Supplementary Table S2. ORF annotation of combined fusion gene information											
ORF	Henst	Tenst	Transcript source	Fusion source	Cancer type	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
5CDS-5UTR	ENST00000357022	ENST00000426997		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000357022	ENST00000432605		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
3UTR-5UTR	ENST00000489653	ENST00000426997		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
3UTR-5UTR	ENST00000489653	ENST00000432605		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000394457	ENST00000426997		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000394457	ENST00000432605		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000410073	ENST00000426997		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000410073	ENST00000432605		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61389977	+
Frame-shit	ENST00000378190	ENST00000350796		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000378190	ENST00000396741		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000378190	ENST00000488964		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000378191	ENST00000350796		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000378191	ENST00000396741		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000378191	ENST00000488964		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
intron-3CDS	ENST00000466761	ENST00000350796		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
intron-intron	ENST00000466761	ENST00000396741		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
intron-intron	ENST00000466761	ENST00000488964		TCGA	RV	ACC	TCGA-OR-A5J2-01A	AJAP1	chr1	4715514	+	CYTH3	chr7	6230162	-
intron-3CDS	ENST00000548241	ENST00000344096		TCGA	RV	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56641277	-	DYRK2	chr12	68050886	+
intron-5UTR	ENST00000548241	ENST00000393555		TCGA	RV	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56641277	-	DYRK2	chr12	68050886	+
intron-intron	ENST00000548241	ENST00000537632		TCGA	RV	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56641277	-	DYRK2	chr12	68050886	+
In-frame	ENST00000267116	ENST00000344096		TCGA	RV	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56641277	-	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000267116	ENST00000393555		TCGA	RV	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56641277	-	DYRK2	chr12	68050886	+
5CDS-intron	ENST00000267116	ENST00000537632		TCGA	RV	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56641277	-	DYRK2	chr12	68050886	+
Frame-shit	ENST00000369878	ENST00000448841		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
Frame-shit	ENST00000369878	ENST00000369889		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
Frame-shit	ENST00000433628	ENST00000448841		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
Frame-shit	ENST00000433628	ENST00000369889		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
intron-3CDS	ENST00000369875	ENST00000448841		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
intron-3CDS	ENST00000369875	ENST00000369889		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
3UTR-3CDS	ENST00000475511	ENST00000448841		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
3UTR-3CDS	ENST00000475511	ENST00000369889		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CNNM2	chr10	104828479	+	WBP1L	chr10	104557750	+
Frame-shit	ENST00000264057	ENST00000409110		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
5CDS-intron	ENST00000264057	ENST00000461532		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
5CDS-intron	ENST00000264057	ENST00000449594		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
intron-3CDS	ENST00000409813	ENST00000409110		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
intron-intron	ENST00000409813	ENST00000461532		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
intron-intron	ENST00000409813	ENST00000449594		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
intron-3CDS	ENST00000489613	ENST00000409110		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
intron-intron	ENST00000489613	ENST00000461532		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
intron-intron	ENST00000489613	ENST00000449594		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DGKD	chr2	234263320	+	SAG	chr2	234255453	+
Frame-shit	ENST00000371269	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000537443	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000535035	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5JY-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
Frame-shit	ENST00000371269	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000537443	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000535035	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5UTR-3CDS	ENST00000265755	ENST00000320699		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-3CDS	ENST00000265755	ENST00000309061		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-5UTR	ENST00000265755	ENST00000590681		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-3CDS	ENST00000455841	ENST00000320699		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-3CDS	ENST00000455841	ENST00000309061		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-5UTR	ENST00000455841	ENST00000590681		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-3CDS	ENST00000424337	ENST00000320699		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-3CDS	ENST00000424337	ENST00000309061		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5UTR-5UTR	ENST00000424337	ENST00000590681		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
intron-3CDS	ENST00000476977	ENST00000320699		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
intron-3CDS	ENST00000476977	ENST00000309061		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
intron-5UTR	ENST00000476977	ENST00000590681		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
intron-3CDS	ENST00000489094	ENST00000320699		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
intron-3CDS	ENST00000489094	ENST00000309061		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
intron-5UTR	ENST00000489094	ENST00000590681		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2IRD1	chr7	73868506	+	DUS3L	chr19	5790346	-
5CDS-5UTR	ENST00000352456	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000352456	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000595018	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000595018	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000392006	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000392006	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000378215	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000378215	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000602130	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000602130	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000593587	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000593587	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000263367	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5CDS-5UTR	ENST00000263367	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
3UTR-5UTR	ENST00000594207	ENST00000360535		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
3UTR-5UTR	ENST00000594207	ENST00000593074		TCGA	RV	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523317	-
5UTR-3CDS	ENST00000587309	ENST00000253407		TCGA	RV	ACC	TCGA-OR-A5LD-01A	KIF18B	chr17	43024996	-	C1QL1	chr17	43037735	-
intron-3CDS	ENST00000438933	ENST00000253407		TCGA	RV	ACC	TCGA-OR-A5LD-01A	KIF18B	chr17	43024996	-	C1QL1	chr17	43037735	-
5UTR-3CDS	ENST00000593135	ENST00000253407		TCGA	RV	ACC	TCGA-OR-A5LD-01A	KIF18B	chr17	43024996	-	C1QL1	chr17	43037735	-
5UTR-3CDS	ENST00000339151	ENST00000253407		TCGA	RV	ACC	TCGA-OR-A5LD-01A	KIF18B	chr17	43024996	-	C1QL1	chr17	43037735	-
intron-3CDS	ENST00000590129	ENST00000253407		TCGA	RV	ACC	TCGA-OR-A5LD-01A	KIF18B	chr17	43024996	-	C1QL1	chr17	43037735	-
Frame-shit	ENST00000354570	ENST00000367800		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000354570	ENST00000457866		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-3UTR	ENST00000354570	ENST00000417892		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000354570	ENST00000327035		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000354570	ENST00000488690		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000354570	ENST00000367798		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000354570	ENST00000528103		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000354570	ENST00000534469		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000354570	ENST00000531527		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000454590	ENST00000367800		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000454590	ENST00000457866		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-3UTR	ENST00000454590	ENST00000417892		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000454590	ENST00000327035		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000454590	ENST00000488690		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000454590	ENST00000367798		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000454590	ENST00000528103		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000454590	ENST00000534469		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000454590	ENST00000531527		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000544465	ENST00000367800		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000544465	ENST00000457866		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-3UTR	ENST00000544465	ENST00000417892		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000544465	ENST00000327035		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000544465	ENST00000488690		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000544465	ENST00000367798		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000544465	ENST00000528103		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000544465	ENST00000534469		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000544465	ENST00000531527		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000438100	ENST00000367800		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000438100	ENST00000457866		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-3UTR	ENST00000438100	ENST00000417892		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000438100	ENST00000327035		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000438100	ENST00000488690		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000438100	ENST00000367798		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000438100	ENST00000528103		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000438100	ENST00000534469		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000438100	ENST00000531527		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000432797	ENST00000367800		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
Frame-shit	ENST00000432797	ENST00000457866		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-3UTR	ENST00000432797	ENST00000417892		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000432797	ENST00000327035		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000432797	ENST00000488690		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000432797	ENST00000367798		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000432797	ENST00000528103		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000432797	ENST00000534469		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-intron	ENST00000432797	ENST00000531527		TCGA	RV	ACC	TCGA-OR-A5K2-01A	MAP7	chr6	136680958	-	AHI1	chr6	135621696	-
5CDS-5UTR	ENST00000252674	ENST00000342362		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000252674	ENST00000382002		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000231423		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000513753		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000397391		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000348262		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000542609		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000310101		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000511486		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
5CDS-intron	ENST00000252674	ENST00000509934		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-5UTR	ENST00000585588	ENST00000342362		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-5UTR	ENST00000585588	ENST00000382002		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000231423		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000513753		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000397391		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000348262		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000542609		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000310101		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000511486		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
intron-intron	ENST00000585588	ENST00000509934		TCGA	RV	ACC	TCGA-OR-A5K9-01A	MLLT1	chr19	6270590	-	PRLR	chr5	35118224	-
Frame-shit	ENST00000401061	ENST00000505624		TCGA	RV	ACC	TCGA-OR-A5LL-01A	MMACHC	chr1	45966085	+	TTC23L	chr5	34896875	+
5CDS-intron	ENST00000401061	ENST00000514080		TCGA	RV	ACC	TCGA-OR-A5LL-01A	MMACHC	chr1	45966085	+	TTC23L	chr5	34896875	+
intron-3CDS	ENST00000477188	ENST00000505624		TCGA	RV	ACC	TCGA-OR-A5LL-01A	MMACHC	chr1	45966085	+	TTC23L	chr5	34896875	+
intron-intron	ENST00000477188	ENST00000514080		TCGA	RV	ACC	TCGA-OR-A5LL-01A	MMACHC	chr1	45966085	+	TTC23L	chr5	34896875	+
Frame-shit	ENST00000394907	ENST00000379116		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
Frame-shit	ENST00000394907	ENST00000338555		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
Frame-shit	ENST00000394907	ENST00000325425		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5CDS-intron	ENST00000394907	ENST00000467651		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5CDS-intron	ENST00000394907	ENST00000400928		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
Frame-shit	ENST00000535975	ENST00000379116		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
Frame-shit	ENST00000535975	ENST00000338555		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
Frame-shit	ENST00000535975	ENST00000325425		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5CDS-intron	ENST00000535975	ENST00000467651		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5CDS-intron	ENST00000535975	ENST00000400928		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
In-frame	ENST00000305435	ENST00000379116		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
In-frame	ENST00000305435	ENST00000338555		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
In-frame	ENST00000305435	ENST00000325425		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5CDS-intron	ENST00000305435	ENST00000467651		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5CDS-intron	ENST00000305435	ENST00000400928		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
intron-3CDS	ENST00000563582	ENST00000379116		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
intron-3CDS	ENST00000563582	ENST00000338555		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
intron-3CDS	ENST00000563582	ENST00000325425		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
intron-intron	ENST00000563582	ENST00000467651		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
intron-intron	ENST00000563582	ENST00000400928		TCGA	RV	ACC	TCGA-OR-A5J1-01A	NRG4	chr15	76301541	-	SCNN1D	chr1	1225857	+
5UTR-5UTR	ENST00000453514	ENST00000424459		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000453514	ENST00000514387		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000453514	ENST00000506184		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000453514	ENST00000454432		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000453514	ENST00000511209		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000453514	ENST00000264779		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000453514	ENST00000538707		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000423041	ENST00000424459		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000423041	ENST00000514387		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000423041	ENST00000506184		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000423041	ENST00000454432		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000423041	ENST00000511209		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000423041	ENST00000264779		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000423041	ENST00000538707		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000504233	ENST00000424459		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000504233	ENST00000514387		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000504233	ENST00000506184		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000504233	ENST00000454432		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000504233	ENST00000511209		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000504233	ENST00000264779		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000504233	ENST00000538707		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000428308	ENST00000424459		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000428308	ENST00000514387		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000428308	ENST00000506184		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000428308	ENST00000454432		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000428308	ENST00000511209		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000428308	ENST00000264779		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000428308	ENST00000538707		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-5UTR	ENST00000502269	ENST00000424459		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-5UTR	ENST00000502269	ENST00000514387		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-5UTR	ENST00000502269	ENST00000506184		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-5UTR	ENST00000502269	ENST00000454432		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-intron	ENST00000502269	ENST00000511209		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-intron	ENST00000502269	ENST00000264779		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
3UTR-intron	ENST00000502269	ENST00000538707		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000296783	ENST00000424459		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000296783	ENST00000514387		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000296783	ENST00000506184		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-5UTR	ENST00000296783	ENST00000454432		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000296783	ENST00000511209		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000296783	ENST00000264779		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-intron	ENST00000296783	ENST00000538707		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PAPD4	chr5	78908898	+	GPBP1	chr5	56471275	+
5UTR-3CDS	ENST00000392491	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000392491	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-intron	ENST00000392491	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000607474	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000607474	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-intron	ENST00000607474	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000368452	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000368452	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-intron	ENST00000368452	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000368448	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000368448	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-intron	ENST00000368448	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000392490	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-3CDS	ENST00000392490	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5UTR-intron	ENST00000392490	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000258014	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000258014	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-intron	ENST00000258014	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000354275	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000354275	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-intron	ENST00000354275	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000368446	ENST00000259089		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-3CDS	ENST00000368446	ENST00000529894		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
intron-intron	ENST00000368446	ENST00000525389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	PKIB	chr6	122954512	+	BLK	chr8	11418811	+
5CDS-5UTR	ENST00000357387	ENST00000504022		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000357387	ENST00000274361		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000357387	ENST00000506364		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000296782	ENST00000504022		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000296782	ENST00000274361		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000296782	ENST00000506364		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
intron-5UTR	ENST00000503698	ENST00000504022		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
intron-5UTR	ENST00000503698	ENST00000274361		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
intron-5UTR	ENST00000503698	ENST00000506364		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RICTOR	chr5	39074213	-	ANKRD31	chr5	74380199	-
5CDS-3UTR	ENST00000528057	ENST00000463837		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-3UTR	ENST00000528057	ENST00000356786		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-5UTR	ENST00000528057	ENST00000301897		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-5UTR	ENST00000528057	ENST00000359902		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-3UTR	ENST00000334205	ENST00000463837		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-3UTR	ENST00000334205	ENST00000356786		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-5UTR	ENST00000334205	ENST00000301897		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-5UTR	ENST00000334205	ENST00000359902		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-3UTR	ENST00000294261	ENST00000463837		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-3UTR	ENST00000294261	ENST00000356786		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-5UTR	ENST00000294261	ENST00000301897		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
5CDS-5UTR	ENST00000294261	ENST00000359902		TCGA	RV	ACC	TCGA-P6-A5OF-01A	RPS6KA4	chr11	64132937	+	CCDC88B	chr11	64116803	+
intron-intron	ENST00000339570	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000339570	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000339570	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000339570	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000415380	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000415380	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000415380	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000415380	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000261693	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000261693	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000261693	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000261693	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000376788	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000376788	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000376788	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-intron	ENST00000376788	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000546215	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000546215	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000546215	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000546215	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000535005	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000535005	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000535005	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000535005	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000541205	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000541205	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000541205	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000541205	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000540495	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000540495	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000540495	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000540495	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000544327	ENST00000216190		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000544327	ENST00000478547		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000544327	ENST00000541106		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
intron-intron	ENST00000544327	ENST00000405442		TCGA	RV	ACC	TCGA-OR-A5JY-01A	SCARB1	chr12	125262179	-	EIF3D	chr22	36922952	-
5CDS-5UTR	ENST00000291574	ENST00000291572		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000398061		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000327505		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000398063		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000398058		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000546158		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-intron	ENST00000291574	ENST00000479117		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000380221	ENST00000291572		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000380221	ENST00000398061		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000380221	ENST00000327505		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000380221	ENST00000398063		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000380221	ENST00000398058		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000380221	ENST00000546158		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
5CDS-intron	ENST00000380221	ENST00000479117		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000291572		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000398061		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000327505		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000398063		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000398058		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000546158		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
intron-intron	ENST00000483973	ENST00000479117		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TRAPPC10	chr21	45475774	+	AGPAT3	chr21	45379515	+
3UTR-3CDS	ENST00000494757	ENST00000348931		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
3UTR-3CDS	ENST00000494757	ENST00000584588		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
3UTR-3CDS	ENST00000494757	ENST00000377940		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000323571	ENST00000348931		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000323571	ENST00000584588		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000323571	ENST00000377940		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000585043	ENST00000348931		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000585043	ENST00000584588		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000585043	ENST00000377940		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000394103	ENST00000348931		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000394103	ENST00000584588		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000394103	ENST00000377940		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000536600	ENST00000348931		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000536600	ENST00000584588		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
5UTR-3CDS	ENST00000536600	ENST00000377940		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
intron-3CDS	ENST00000583130	ENST00000348931		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
intron-3CDS	ENST00000583130	ENST00000584588		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
intron-3CDS	ENST00000583130	ENST00000377940		TCGA	RV	ACC	TCGA-OR-A5JP-01A	WIPF2	chr17	38375744	+	ZPBP2	chr17	38027717	+
intron-3CDS	ENST00000505350	ENST00000378339		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
intron-3CDS	ENST00000505350	ENST00000254901		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
intron-3CDS	ENST00000505350	ENST00000506158		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
intron-intron	ENST00000505350	ENST00000464751		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
Frame-shit	ENST00000457016	ENST00000378339		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
In-frame	ENST00000457016	ENST00000254901		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
Frame-shit	ENST00000457016	ENST00000506158		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
5CDS-intron	ENST00000457016	ENST00000464751		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
Frame-shit	ENST00000257430	ENST00000378339		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
In-frame	ENST00000257430	ENST00000254901		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
Frame-shit	ENST00000257430	ENST00000506158		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
5CDS-intron	ENST00000257430	ENST00000464751		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
Frame-shit	ENST00000508376	ENST00000378339		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
In-frame	ENST00000508376	ENST00000254901		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
Frame-shit	ENST00000508376	ENST00000506158		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
5CDS-intron	ENST00000508376	ENST00000464751		TCGA	RV	ACC	TCGA-OR-A5JX-01A	APC	chr5	112137080	+	REEP2	chr5	137781372	+
In-frame	ENST00000369880	ENST00000369902		TCGA	RV	ACC	TCGA-OR-A5J7-01A	AS3MT	chr10	104650435	+	SUFU	chr10	104356897	+
In-frame	ENST00000369880	ENST00000369899		TCGA	RV	ACC	TCGA-OR-A5J7-01A	AS3MT	chr10	104650435	+	SUFU	chr10	104356897	+
In-frame	ENST00000369880	ENST00000423559		TCGA	RV	ACC	TCGA-OR-A5J7-01A	AS3MT	chr10	104650435	+	SUFU	chr10	104356897	+
5CDS-3UTR	ENST00000369880	ENST00000471000		TCGA	RV	ACC	TCGA-OR-A5J7-01A	AS3MT	chr10	104650435	+	SUFU	chr10	104356897	+
Frame-shit	ENST00000435504	ENST00000261308		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
Frame-shit	ENST00000435504	ENST00000535264		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000435504	ENST00000538977		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
Frame-shit	ENST00000336112	ENST00000261308		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
Frame-shit	ENST00000336112	ENST00000535264		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000336112	ENST00000538977		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-3CDS	ENST00000272341	ENST00000261308		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-3CDS	ENST00000272341	ENST00000535264		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-intron	ENST00000272341	ENST00000538977		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000404843	ENST00000261308		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000404843	ENST00000535264		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
intron-intron	ENST00000404843	ENST00000538977		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-3CDS	ENST00000497092	ENST00000261308		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-3CDS	ENST00000497092	ENST00000535264		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-intron	ENST00000497092	ENST00000538977		TCGA	RV	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64863340	+
5UTR-3CDS	ENST00000225726	ENST00000310581		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000225726	ENST00000296820		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000225726	ENST00000334602		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000225726	ENST00000508104		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-intron	ENST00000225726	ENST00000522877		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000403162	ENST00000310581		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000403162	ENST00000296820		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000403162	ENST00000334602		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000403162	ENST00000508104		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-intron	ENST00000403162	ENST00000522877		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000582252	ENST00000310581		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000582252	ENST00000296820		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000582252	ENST00000334602		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000582252	ENST00000508104		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
5UTR-intron	ENST00000582252	ENST00000522877		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCDC47	chr17	61850772	-	TERT	chr5	1282739	-
Frame-shit	ENST00000460006	ENST00000262811		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
5CDS-3UTR	ENST00000460006	ENST00000608648		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
Frame-shit	ENST00000379062	ENST00000262811		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
5CDS-3UTR	ENST00000379062	ENST00000608648		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
3UTR-3CDS	ENST00000379070	ENST00000262811		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
3UTR-3UTR	ENST00000379070	ENST00000608648		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
intron-3CDS	ENST00000535100	ENST00000262811		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
intron-3UTR	ENST00000535100	ENST00000608648		TCGA	RV	ACC	TCGA-OU-A5PI-01A	CDS2	chr20	5167485	+	MAST3	chr19	18232495	+
In-frame	ENST00000334220	ENST00000238571		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
In-frame	ENST00000334220	ENST00000325680		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
5CDS-intron	ENST00000334220	ENST00000552421		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
5CDS-intron	ENST00000334220	ENST00000546901		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
In-frame	ENST00000334212	ENST00000238571		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
In-frame	ENST00000334212	ENST00000325680		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
5CDS-intron	ENST00000334212	ENST00000552421		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
5CDS-intron	ENST00000334212	ENST00000546901		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
3UTR-3CDS	ENST00000555190	ENST00000238571		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
3UTR-3CDS	ENST00000555190	ENST00000325680		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
3UTR-intron	ENST00000555190	ENST00000552421		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
3UTR-intron	ENST00000555190	ENST00000546901		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DLST	chr14	75361112	+	YLPM1	chr14	75264283	+
Frame-shit	ENST00000342382	ENST00000382080		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000342382	ENST00000421524		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
Frame-shit	ENST00000303525	ENST00000382080		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000303525	ENST00000421524		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
Frame-shit	ENST00000382021	ENST00000382080		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000382021	ENST00000421524		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
intron-3CDS	ENST00000512136	ENST00000382080		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
intron-intron	ENST00000512136	ENST00000421524		TCGA	RV	ACC	TCGA-OR-A5KX-01A	DNAJC21	chr5	34930021	+	SGCZ	chr8	14181713	-
5UTR-3CDS	ENST00000299293	ENST00000343702		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000299293	ENST00000344911		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000299293	ENST00000538383		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-intron	ENST00000299293	ENST00000553059		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-intron	ENST00000299293	ENST00000552603		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000549921	ENST00000343702		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000549921	ENST00000344911		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000549921	ENST00000538383		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-intron	ENST00000549921	ENST00000553059		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-intron	ENST00000549921	ENST00000552603		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000550389	ENST00000343702		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000550389	ENST00000344911		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-3CDS	ENST00000550389	ENST00000538383		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-intron	ENST00000550389	ENST00000553059		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
5UTR-intron	ENST00000550389	ENST00000552603		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
intron-3CDS	ENST00000397997	ENST00000343702		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
intron-3CDS	ENST00000397997	ENST00000344911		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
intron-3CDS	ENST00000397997	ENST00000538383		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
intron-intron	ENST00000397997	ENST00000553059		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
intron-intron	ENST00000397997	ENST00000552603		TCGA	RV	ACC	TCGA-OR-A5JA-01A	FRS2	chr12	69864310	+	NTN4	chr12	96063922	-
Frame-shit	ENST00000319550	ENST00000360388		TCGA	RV	ACC	TCGA-OR-A5KO-01A	NT5DC1	chr6	116439108	+	SLC35F1	chr6	118588158	+
intron-3CDS	ENST00000587625	ENST00000261475		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000587625	ENST00000555644		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000247970	ENST00000261475		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000247970	ENST00000555644		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000588695	ENST00000261475		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000588695	ENST00000555644		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000380889	ENST00000261475		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000380889	ENST00000555644		TCGA	RV	ACC	TCGA-OR-A5KV-01A	PIN1	chr19	9960365	+	PPP2R3C	chr14	35585943	-
In-frame	ENST00000378641	ENST00000590071		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
In-frame	ENST00000378641	ENST00000270288		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
In-frame	ENST00000338037	ENST00000590071		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
In-frame	ENST00000338037	ENST00000270288		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
In-frame	ENST00000378637	ENST00000590071		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
In-frame	ENST00000378637	ENST00000270288		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
3UTR-3CDS	ENST00000494924	ENST00000590071		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
3UTR-3CDS	ENST00000494924	ENST00000270288		TCGA	RV	ACC	TCGA-OU-A5PI-01A	PLCB1	chr20	8737825	+	WTIP	chr19	34981281	+
intron-3CDS	ENST00000422945	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000422945	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-intron	ENST00000422945	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000556068	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000556068	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-intron	ENST00000556068	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000554442	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000554442	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-intron	ENST00000554442	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000328724	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000328724	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-intron	ENST00000328724	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000350249	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000350249	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
5CDS-intron	ENST00000350249	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000445439	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000445439	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
5CDS-intron	ENST00000445439	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000334743	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000334743	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
5CDS-intron	ENST00000334743	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000557095	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000557095	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
5CDS-intron	ENST00000557095	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000556260	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-3CDS	ENST00000556260	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
intron-intron	ENST00000556260	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000556946	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000556946	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
5CDS-intron	ENST00000556946	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000557714	ENST00000331968		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000557714	ENST00000415220		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
5CDS-intron	ENST00000557714	ENST00000551644		TCGA	RV	ACC	TCGA-OR-A5J9-01A	PPP2R5C	chr14	102276373	+	PRKD1	chr14	30069023	-
Frame-shit	ENST00000356151	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000356151	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000356151	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000356151	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000356151	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
Frame-shit	ENST00000302779	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000302779	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000302779	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000302779	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000302779	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
Frame-shit	ENST00000383716	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000383716	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000383716	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000383716	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000383716	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
Frame-shit	ENST00000463280	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000463280	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000463280	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000463280	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000463280	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
Frame-shit	ENST00000383715	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000383715	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000383715	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000383715	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000383715	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
Frame-shit	ENST00000484288	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000484288	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000484288	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000484288	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000484288	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
Frame-shit	ENST00000479241	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000479241	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000479241	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-3UTR	ENST00000479241	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5CDS-intron	ENST00000479241	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5UTR-3CDS	ENST00000536660	ENST00000445193		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5UTR-3UTR	ENST00000536660	ENST00000477305		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5UTR-3UTR	ENST00000536660	ENST00000295959		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5UTR-3UTR	ENST00000536660	ENST00000466547		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
5UTR-intron	ENST00000536660	ENST00000528153		TCGA	RV	ACC	TCGA-PK-A5HA-01A	PXK	chr3	58318817	+	RPP14	chr3	58296234	+
In-frame	ENST00000202677	ENST00000371754		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
5CDS-5UTR	ENST00000202677	ENST00000469991		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
5CDS-intron	ENST00000202677	ENST00000371752		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
5CDS-intron	ENST00000202677	ENST00000396105		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
intron-3CDS	ENST00000495793	ENST00000371754		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
intron-5UTR	ENST00000495793	ENST00000469991		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
intron-intron	ENST00000495793	ENST00000371752		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
intron-intron	ENST00000495793	ENST00000396105		TCGA	RV	ACC	TCGA-OR-A5JJ-01A	RALGAPA2	chr20	20693018	-	ZNFX1	chr20	47855837	-
intron-intron	ENST00000293677	ENST00000264818		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RAVER1	chr19	10426895	-	TYK2	chr19	10491352	-
intron-intron	ENST00000293677	ENST00000524462		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RAVER1	chr19	10426895	-	TYK2	chr19	10491352	-
intron-intron	ENST00000293677	ENST00000525621		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RAVER1	chr19	10426895	-	TYK2	chr19	10491352	-
intron-intron	ENST00000293677	ENST00000529370		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RAVER1	chr19	10426895	-	TYK2	chr19	10491352	-
intron-intron	ENST00000293677	ENST00000529422		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RAVER1	chr19	10426895	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000422611	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000422611	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000422611	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000338335	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000338335	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000338335	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000316341	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000316341	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000316341	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000572037	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000572037	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000572037	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000541864	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000541864	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000541864	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000576616	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000576616	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000576616	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000537830	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-5UTR	ENST00000537830	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5CDS-intron	ENST00000537830	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5UTR-intron	ENST00000572010	ENST00000393847		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5UTR-5UTR	ENST00000572010	ENST00000412757		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
5UTR-intron	ENST00000572010	ENST00000572888		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SLC12A4	chr16	67991645	-	DPEP2	chr16	68033651	-
In-frame	ENST00000393328	ENST00000427569		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
5CDS-5UTR	ENST00000393328	ENST00000416949		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
Frame-shit	ENST00000393331	ENST00000427569		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
5CDS-5UTR	ENST00000393331	ENST00000416949		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
Frame-shit	ENST00000347630	ENST00000427569		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
5CDS-5UTR	ENST00000347630	ENST00000416949		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
Frame-shit	ENST00000504102	ENST00000427569		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
5CDS-5UTR	ENST00000504102	ENST00000416949		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
In-frame	ENST00000503676	ENST00000427569		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
5CDS-5UTR	ENST00000503676	ENST00000416949		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
intron-3CDS	ENST00000513080	ENST00000427569		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
intron-5UTR	ENST00000513080	ENST00000416949		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPOP	chr17	47688642	-	AARSD1	chr17	41116254	-
In-frame	ENST00000337273	ENST00000340208		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000424173		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000504921		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000514028		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000437473		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000510942		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000506554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000508569		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000514015		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000337273	ENST00000539796		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-5UTR	ENST00000337273	ENST00000503554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
In-frame	ENST00000454282	ENST00000340208		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000424173		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000504921		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000514028		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000437473		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000510942		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000506554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000508569		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000514015		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000454282	ENST00000539796		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-5UTR	ENST00000454282	ENST00000503554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-3CDS	ENST00000447967	ENST00000340208		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000424173		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000504921		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000514028		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000437473		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000510942		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000506554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000508569		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000514015		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-intron	ENST00000447967	ENST00000539796		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5UTR-5UTR	ENST00000447967	ENST00000503554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
In-frame	ENST00000523768	ENST00000340208		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000424173		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000504921		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000514028		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000437473		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000510942		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000506554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000508569		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000514015		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-intron	ENST00000523768	ENST00000539796		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
5CDS-5UTR	ENST00000523768	ENST00000503554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-3CDS	ENST00000513944	ENST00000340208		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000424173		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000504921		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000514028		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000437473		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000510942		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000506554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000508569		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000514015		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000513944	ENST00000539796		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-5UTR	ENST00000513944	ENST00000503554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-3CDS	ENST00000506351	ENST00000340208		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000424173		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000504921		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000514028		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000437473		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000510942		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000506554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000508569		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000514015		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-intron	ENST00000506351	ENST00000539796		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
intron-5UTR	ENST00000506351	ENST00000503554		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TNPO1	chr5	72112579	+	MEF2C	chr5	88057145	-
In-frame	ENST00000182527	ENST00000370862		TCGA	RV	ACC	TCGA-P6-A5OG-01A	TRAM2	chr6	52441594	-	HCRTR2	chr6	55142178	+
Frame-shit	ENST00000372899	ENST00000454782		TCGA	RV	ACC	TCGA-OR-A5JY-01A	UBR2	chr6	42641931	+	PXT1	chr6	36368361	-
Frame-shit	ENST00000372901	ENST00000454782		TCGA	RV	ACC	TCGA-OR-A5JY-01A	UBR2	chr6	42641931	+	PXT1	chr6	36368361	-
3UTR-3CDS	ENST00000372883	ENST00000454782		TCGA	RV	ACC	TCGA-OR-A5JY-01A	UBR2	chr6	42641931	+	PXT1	chr6	36368361	-
intron-3CDS	ENST00000372903	ENST00000454782		TCGA	RV	ACC	TCGA-OR-A5JY-01A	UBR2	chr6	42641931	+	PXT1	chr6	36368361	-
Frame-shit	ENST00000253003	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000253003	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000253003	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000253003	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000253003	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000462554	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462554	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462554	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462554	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462554	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5JR-01A	ADRM1	chr20	60883916	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000298834	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000426438	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000314845	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000533727	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000534300	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000458649	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000528950	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000529963	ENST00000326737		TCGA	RV	ACC	TCGA-OR-A5L6-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
In-frame	ENST00000298834	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
In-frame	ENST00000426438	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
In-frame	ENST00000314845	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
In-frame	ENST00000533727	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
In-frame	ENST00000534300	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
In-frame	ENST00000458649	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
Frame-shit	ENST00000528950	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
5UTR-3CDS	ENST00000529963	ENST00000378623		TCGA	RV	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898188	-
Frame-shit	ENST00000535016	ENST00000373644		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CCAR1	chr10	70520949	+	TET1	chr10	70432652	+
Frame-shit	ENST00000265872	ENST00000373644		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CCAR1	chr10	70520949	+	TET1	chr10	70432652	+
Frame-shit	ENST00000543719	ENST00000373644		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CCAR1	chr10	70520949	+	TET1	chr10	70432652	+
intron-3CDS	ENST00000483264	ENST00000373644		TCGA	RV	ACC	TCGA-OR-A5J7-01A	CCAR1	chr10	70520949	+	TET1	chr10	70432652	+
5UTR-intron	ENST00000504376	ENST00000380629		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000504376	ENST00000523515		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000504376	ENST00000520409		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000504376	ENST00000518611		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000504376	ENST00000521254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000382254	ENST00000380629		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000382254	ENST00000523515		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000382254	ENST00000520409		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000382254	ENST00000518611		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
5UTR-intron	ENST00000382254	ENST00000521254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000522262	ENST00000380629		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000522262	ENST00000523515		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000522262	ENST00000520409		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000522262	ENST00000518611		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000522262	ENST00000521254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521384	ENST00000380629		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521384	ENST00000523515		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521384	ENST00000520409		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521384	ENST00000518611		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521384	ENST00000521254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	CDH12	chr5	22505379	-	BNIP3L	chr8	26362823	+
intron-3CDS	ENST00000483017	ENST00000331320		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000483017	ENST00000406191		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000483017	ENST00000405646		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000483017	ENST00000435036		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
In-frame	ENST00000329146	ENST00000331320		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
In-frame	ENST00000329146	ENST00000406191		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
In-frame	ENST00000329146	ENST00000405646		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
In-frame	ENST00000329146	ENST00000435036		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000548989	ENST00000331320		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000548989	ENST00000406191		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000548989	ENST00000405646		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
intron-3CDS	ENST00000548989	ENST00000435036		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	CRIP2	chr14	105941242	+	MTA1	chr14	105935804	+
In-frame	ENST00000296550	ENST00000535741		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
In-frame	ENST00000296550	ENST00000510413		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000296550	ENST00000503716		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000296550	ENST00000357115		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000296550	ENST00000507224		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
In-frame	ENST00000506325	ENST00000535741		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
In-frame	ENST00000506325	ENST00000510413		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000506325	ENST00000503716		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000506325	ENST00000357115		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000506325	ENST00000507224		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
In-frame	ENST00000302176	ENST00000535741		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
In-frame	ENST00000302176	ENST00000510413		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000302176	ENST00000503716		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000302176	ENST00000357115		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
5CDS-5UTR	ENST00000302176	ENST00000507224		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
intron-3CDS	ENST00000507694	ENST00000535741		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
intron-3CDS	ENST00000507694	ENST00000510413		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
intron-5UTR	ENST00000507694	ENST00000503716		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
intron-5UTR	ENST00000507694	ENST00000357115		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
intron-5UTR	ENST00000507694	ENST00000507224		TCGA	RV	ACC	TCGA-OR-A5LH-01A	DCLK2	chr4	151023964	+	LRBA	chr4	151247050	-
intron-intron	ENST00000585892	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000585892	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000585892	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000585892	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000585892	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000585892	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000585892	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000585892	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000314646	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000314646	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000314646	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000314646	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000314646	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000314646	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000314646	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000314646	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000359692	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000359692	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000359692	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000359692	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000359692	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000359692	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000359692	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000359692	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000389253	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000389253	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000389253	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000389253	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000389253	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000389253	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000389253	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000389253	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000355667	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000355667	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000355667	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000355667	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-intron	ENST00000355667	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000355667	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000355667	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
5CDS-3UTR	ENST00000355667	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000408974	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000408974	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000408974	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000408974	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000408974	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000408974	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000408974	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000408974	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000591819	ENST00000584348		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000591819	ENST00000571335		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000591819	ENST00000436810		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000591819	ENST00000542886		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-intron	ENST00000591819	ENST00000457293		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000591819	ENST00000270570		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000591819	ENST00000575023		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
intron-3UTR	ENST00000591819	ENST00000395585		TCGA	RV	ACC	TCGA-OR-A5J9-01A	DNM2	chr19	10942573	+	SLC47A1	chr17	19482057	+
Frame-shit	ENST00000369983	ENST00000605788		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
Frame-shit	ENST00000369983	ENST00000405356		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
5CDS-5UTR	ENST00000369983	ENST00000603742		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
5CDS-5UTR	ENST00000369983	ENST00000488254		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
5CDS-intron	ENST00000369983	ENST00000477977		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
intron-3CDS	ENST00000476019	ENST00000605788		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
intron-3CDS	ENST00000476019	ENST00000405356		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
intron-5UTR	ENST00000476019	ENST00000603742		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
intron-5UTR	ENST00000476019	ENST00000488254		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
intron-intron	ENST00000476019	ENST00000477977		TCGA	RV	ACC	TCGA-OR-A5LO-01A	GBF1	chr10	104130617	+	NOLC1	chr10	103918950	+
5UTR-3CDS	ENST00000382159	ENST00000373635		TCGA	RV	ACC	TCGA-OR-A5JP-01A	GNG7	chr19	2555147	-	PSMD1	chr2	232018278	+
5UTR-3CDS	ENST00000382159	ENST00000308696		TCGA	RV	ACC	TCGA-OR-A5JP-01A	GNG7	chr19	2555147	-	PSMD1	chr2	232018278	+
5UTR-3CDS	ENST00000382159	ENST00000409643		TCGA	RV	ACC	TCGA-OR-A5JP-01A	GNG7	chr19	2555147	-	PSMD1	chr2	232018278	+
5UTR-intron	ENST00000382159	ENST00000488354		TCGA	RV	ACC	TCGA-OR-A5JP-01A	GNG7	chr19	2555147	-	PSMD1	chr2	232018278	+
Frame-shit	ENST00000443617	ENST00000261891		TCGA	RV	ACC	TCGA-OR-A5JC-01A	HERC1	chr15	63956669	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000443617	ENST00000457488		TCGA	RV	ACC	TCGA-OR-A5JC-01A	HERC1	chr15	63956669	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000443617	ENST00000558069		TCGA	RV	ACC	TCGA-OR-A5JC-01A	HERC1	chr15	63956669	-	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000443617	ENST00000558482		TCGA	RV	ACC	TCGA-OR-A5JC-01A	HERC1	chr15	63956669	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000444766	ENST00000381971		TCGA	RV	ACC	TCGA-OR-A5JS-01A	INTS2	chr17	59988881	-	GLIS3	chr9	3829492	-
Frame-shit	ENST00000444766	ENST00000324333		TCGA	RV	ACC	TCGA-OR-A5JS-01A	INTS2	chr17	59988881	-	GLIS3	chr9	3829492	-
5CDS-5UTR	ENST00000444766	ENST00000461870		TCGA	RV	ACC	TCGA-OR-A5JS-01A	INTS2	chr17	59988881	-	GLIS3	chr9	3829492	-
Frame-shit	ENST00000251334	ENST00000381971		TCGA	RV	ACC	TCGA-OR-A5JS-01A	INTS2	chr17	59988881	-	GLIS3	chr9	3829492	-
Frame-shit	ENST00000251334	ENST00000324333		TCGA	RV	ACC	TCGA-OR-A5JS-01A	INTS2	chr17	59988881	-	GLIS3	chr9	3829492	-
5CDS-5UTR	ENST00000251334	ENST00000461870		TCGA	RV	ACC	TCGA-OR-A5JS-01A	INTS2	chr17	59988881	-	GLIS3	chr9	3829492	-
5CDS-5UTR	ENST00000342922	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000342922	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000402799	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000402799	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000311027	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000311027	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000406482	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000406482	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000407859	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000407859	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000349238	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000349238	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000395344	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000395344	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000395336	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000395336	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000402192	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000402192	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000405573	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000405573	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000489415	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000489415	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MADD	chr11	47346128	+	ASIP	chr20	32848171	+
Frame-shit	ENST00000262510	ENST00000308159		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000262510	ENST00000569842		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000262510	ENST00000564887		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000262510	ENST00000569595		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000262510	ENST00000542526		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
Frame-shit	ENST00000436936	ENST00000308159		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000436936	ENST00000569842		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000436936	ENST00000564887		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000436936	ENST00000569595		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000436936	ENST00000542526		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
Frame-shit	ENST00000308149	ENST00000308159		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000308149	ENST00000569842		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000308149	ENST00000564887		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000308149	ENST00000569595		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000308149	ENST00000542526		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
intron-3CDS	ENST00000543141	ENST00000308159		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
intron-3CDS	ENST00000543141	ENST00000569842		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
intron-3CDS	ENST00000543141	ENST00000564887		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
intron-intron	ENST00000543141	ENST00000569595		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
intron-intron	ENST00000543141	ENST00000542526		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
Frame-shit	ENST00000539144	ENST00000308159		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000539144	ENST00000569842		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
In-frame	ENST00000539144	ENST00000564887		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000539144	ENST00000569595		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
5CDS-intron	ENST00000539144	ENST00000542526		TCGA	RV	ACC	TCGA-PK-A5HA-01A	NLRC5	chr16	57056227	+	NUP93	chr16	56878411	+
Frame-shit	ENST00000354179	ENST00000506693		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000354179	ENST00000358149		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000354179	ENST00000512315		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000354179	ENST00000503425		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000354179	ENST00000261948		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000354179	ENST00000511834		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000354179	ENST00000503039		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000506693		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000358149		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000512315		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000503425		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000261948		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000511834		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000439151	ENST00000503039		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000506693		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000358149		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000512315		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000503425		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000261948		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000511834		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000347982	ENST00000503039		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000506693		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000358149		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000512315		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000503425		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000261948		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000511834		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000361032	ENST00000503039		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000506693		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000358149		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000512315		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000503425		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000261948		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000511834		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000511258	ENST00000503039		TCGA	RV	ACC	TCGA-OR-A5JE-01A	NSD1	chr5	176563031	+	ZNF346	chr5	176489059	+
Frame-shit	ENST00000514342	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000514342	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000514342	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000514342	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000514342	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000505697	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000505697	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000505697	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000505697	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000505697	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
3UTR-3CDS	ENST00000511363	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
3UTR-3CDS	ENST00000511363	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
3UTR-5UTR	ENST00000511363	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
3UTR-intron	ENST00000511363	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
3UTR-5UTR	ENST00000511363	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000503750	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000503750	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000503750	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000503750	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000503750	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000281631	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000281631	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000281631	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000281631	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000281631	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000514067	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000514067	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000514067	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000514067	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000514067	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000505554	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000505554	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000505554	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000505554	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000505554	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-3CDS	ENST00000513738	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-3CDS	ENST00000513738	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-5UTR	ENST00000513738	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-intron	ENST00000513738	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-5UTR	ENST00000513738	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-3CDS	ENST00000503665	ENST00000341048		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-3CDS	ENST00000503665	ENST00000504958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-5UTR	ENST00000503665	ENST00000505970		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-intron	ENST00000503665	ENST00000513241		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
intron-5UTR	ENST00000503665	ENST00000434982		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PARP8	chr5	50125795	+	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000357277	ENST00000380122		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000357277	ENST00000398155		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000357277	ENST00000485153		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
Frame-shit	ENST00000303843	ENST00000380122		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000303843	ENST00000398155		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000303843	ENST00000485153		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5UTR-3CDS	ENST00000380064	ENST00000380122		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5UTR-intron	ENST00000380064	ENST00000398155		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
5UTR-intron	ENST00000380064	ENST00000485153		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
intron-3CDS	ENST00000469714	ENST00000380122		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
intron-intron	ENST00000469714	ENST00000398155		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
intron-intron	ENST00000469714	ENST00000485153		TCGA	RV	ACC	TCGA-OR-A5LO-01A	REPS2	chrX	17024467	+	TXLNG	chrX	16836697	+
Frame-shit	ENST00000553127	ENST00000393330		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000553127	ENST00000247829		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000553127	ENST00000546561		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-intron	ENST00000553127	ENST00000552128		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-5UTR	ENST00000553127	ENST00000552786		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000321898	ENST00000393330		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000321898	ENST00000247829		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000321898	ENST00000546561		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-intron	ENST00000321898	ENST00000552128		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-5UTR	ENST00000321898	ENST00000552786		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000552918	ENST00000393330		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000552918	ENST00000247829		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000552918	ENST00000546561		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-intron	ENST00000552918	ENST00000552128		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-5UTR	ENST00000552918	ENST00000552786		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
intron-3CDS	ENST00000547865	ENST00000393330		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
intron-3CDS	ENST00000547865	ENST00000247829		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
intron-3CDS	ENST00000547865	ENST00000546561		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
intron-intron	ENST00000547865	ENST00000552128		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
intron-5UTR	ENST00000547865	ENST00000552786		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000552557	ENST00000393330		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000552557	ENST00000247829		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
Frame-shit	ENST00000552557	ENST00000546561		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-intron	ENST00000552557	ENST00000552128		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
5CDS-5UTR	ENST00000552557	ENST00000552786		TCGA	RV	ACC	TCGA-OR-A5KT-01A	SPATS2	chr12	49908396	+	TSPAN8	chr12	71533628	-
intron-3CDS	ENST00000430069	ENST00000446450		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000430069	ENST00000354956		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000430069	ENST00000354449		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
intron-intron	ENST00000430069	ENST00000469654		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000457928	ENST00000446450		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000457928	ENST00000354956		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000457928	ENST00000354449		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
5UTR-intron	ENST00000457928	ENST00000469654		TCGA	RV	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176914909	-	ATG7	chr3	11596285	+
5CDS-5UTR	ENST00000334398	ENST00000535916		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
5CDS-intron	ENST00000334398	ENST00000286428		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
5CDS-intron	ENST00000334398	ENST00000459836		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
5CDS-5UTR	ENST00000369439	ENST00000535916		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
5CDS-intron	ENST00000369439	ENST00000286428		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
5CDS-intron	ENST00000369439	ENST00000459836		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
intron-5UTR	ENST00000461075	ENST00000535916		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
intron-intron	ENST00000461075	ENST00000286428		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
intron-intron	ENST00000461075	ENST00000459836		TCGA	RV	ACC	TCGA-OR-A5JO-01A	TMLHE	chrX	154754117	-	VBP1	chrX	154437152	+
In-frame	ENST00000216807	ENST00000558850		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000216807	ENST00000559185		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000216807	ENST00000442396		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000216807	ENST00000262236		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
5CDS-3UTR	ENST00000216807	ENST00000420933		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000543183	ENST00000558850		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000543183	ENST00000559185		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000543183	ENST00000442396		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
In-frame	ENST00000543183	ENST00000262236		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
5CDS-3UTR	ENST00000543183	ENST00000420933		TCGA	RV	ACC	TCGA-OR-A5KW-01A	BRMS1L	chr14	36304129	+	ZNF839	chr14	102805153	+
intron-3CDS	ENST00000512163	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000512163	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000512163	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000512163	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000512163	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-intron	ENST00000512163	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000393929	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000393929	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000393929	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000393929	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000393929	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-intron	ENST00000393929	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000340828	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000340828	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000340828	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000340828	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000340828	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-intron	ENST00000340828	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000511683	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000511683	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000511683	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000511683	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000511683	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-intron	ENST00000511683	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000510664	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000510664	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000510664	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000510664	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000510664	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-intron	ENST00000510664	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000504553	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000504553	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000504553	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000504553	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000504553	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
intron-intron	ENST00000504553	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000509425	ENST00000506729		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000509425	ENST00000379807		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000509425	ENST00000389019		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000509425	ENST00000513675		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-3CDS	ENST00000509425	ENST00000379810		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-intron	ENST00000509425	ENST00000514551		TCGA	RV	ACC	TCGA-OR-A5JS-01A	CCNG1	chr5	162871487	+	SLCO6A1	chr5	101709198	-
3UTR-intron	ENST00000371817	ENST00000354185		TCGA	RV	ACC	TCGA-P6-A5OG-01A	COL5A1	chr9	137734719	+	DDX21	chr10	70723858	+
intron-intron	ENST00000464187	ENST00000354185		TCGA	RV	ACC	TCGA-P6-A5OG-01A	COL5A1	chr9	137734719	+	DDX21	chr10	70723858	+
In-frame	ENST00000447467	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000447467	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000447467	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
In-frame	ENST00000324972	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000324972	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000324972	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
In-frame	ENST00000537881	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000537881	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000537881	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
In-frame	ENST00000437599	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000437599	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000437599	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
In-frame	ENST00000359388	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000359388	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000359388	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
intron-3CDS	ENST00000413338	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
intron-3UTR	ENST00000413338	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
intron-3UTR	ENST00000413338	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
In-frame	ENST00000457059	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000457059	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
5CDS-3UTR	ENST00000457059	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
intron-3CDS	ENST00000497626	ENST00000325885		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
intron-3UTR	ENST00000497626	ENST00000257621		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
intron-3UTR	ENST00000497626	ENST00000428113		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DYNC1I1	chr7	95499310	+	ASB4	chr7	95125070	+
Frame-shit	ENST00000335255	ENST00000293826		TCGA	RV	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF12-TNFSF13	chr17	7462941	+
intron-3CDS	ENST00000529652	ENST00000293826		TCGA	RV	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF12-TNFSF13	chr17	7462941	+
intron-3CDS	ENST00000395309	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395309	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395309	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395309	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395309	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
In-frame	ENST00000413890	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000413890	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000413890	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000413890	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000413890	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000438792	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000438792	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000438792	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000438792	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000438792	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000395314	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395314	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395314	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395314	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395314	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000395308	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395308	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395308	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395308	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395308	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000395311	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395311	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395311	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395311	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395311	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000416613	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000416613	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000416613	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000416613	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000416613	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000554507	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000554507	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000554507	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000554507	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000554507	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000555573	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000555573	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000555573	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000555573	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
intron-intron	ENST00000555573	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	KTN1	chr14	56151301	+	CCT5	chr5	10250033	+
In-frame	ENST00000375742	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375742	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375742	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375742	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375742	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375742	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375742	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000375742	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375755	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000375755	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375750	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000375750	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000534153	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000534153	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375703	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000375703	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000375740	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000375740	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000431848	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000431848	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000482280	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000482280	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
In-frame	ENST00000395853	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000395853	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000430216	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000430216	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000486924	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000486924	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000416549	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000416549	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000456839	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000456839	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000478326	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000478326	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000458144	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000458144	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000419269	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000419269	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000414412	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000414412	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549746	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000549746	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000427735	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000427735	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457742	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000457742	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000497157	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000497157	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000435700	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000435700	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436559	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000436559	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000439816	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000439816	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000460275	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000460275	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000549604	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000549604	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441395	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000441395	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000441401	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000441401	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000578225	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000578225	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000473342	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000473342	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448617	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000448617	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436192	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000436192	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000436004	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000436004	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000490125	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000490125	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000457917	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000457917	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000480915	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000480915	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000443040	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000443040	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000405837		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000433053		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000278893		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000360796		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000403550		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000407022		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-3CDS	ENST00000448169	ENST00000421906		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
intron-intron	ENST00000448169	ENST00000537604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MSH5	chr6	31726954	+	BSCL2	chr11	62460269	-
5CDS-5UTR	ENST00000338257	ENST00000300417		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
5CDS-5UTR	ENST00000338257	ENST00000373324		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
5CDS-5UTR	ENST00000338257	ENST00000323301		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
5CDS-intron	ENST00000338257	ENST00000373322		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
5CDS-intron	ENST00000338257	ENST00000483302		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
intron-5UTR	ENST00000595046	ENST00000300417		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
intron-5UTR	ENST00000595046	ENST00000373324		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
intron-5UTR	ENST00000595046	ENST00000323301		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
intron-intron	ENST00000595046	ENST00000373322		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
intron-intron	ENST00000595046	ENST00000483302		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MYO1F	chr19	8642191	-	LRSAM1	chr9	130214208	+
In-frame	ENST00000357277	ENST00000379226		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
5CDS-intron	ENST00000357277	ENST00000476598		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
5CDS-intron	ENST00000357277	ENST00000379220		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
In-frame	ENST00000303843	ENST00000379226		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
5CDS-intron	ENST00000303843	ENST00000476598		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
5CDS-intron	ENST00000303843	ENST00000379220		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
intron-3CDS	ENST00000380064	ENST00000379226		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
intron-intron	ENST00000380064	ENST00000476598		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
intron-intron	ENST00000380064	ENST00000379220		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
intron-3CDS	ENST00000469714	ENST00000379226		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
intron-intron	ENST00000469714	ENST00000476598		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
intron-intron	ENST00000469714	ENST00000379220		TCGA	RV	ACC	TCGA-OR-A5KV-01A	REPS2	chrX	16965257	+	APOO	chrX	23899069	-
5CDS-intron	ENST00000373433	ENST00000409224		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
5CDS-intron	ENST00000373433	ENST00000424583		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
5CDS-intron	ENST00000373433	ENST00000410050		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
5CDS-intron	ENST00000373433	ENST00000602424		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
5CDS-5UTR	ENST00000373433	ENST00000409447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
5CDS-intron	ENST00000373433	ENST00000162023		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-intron	ENST00000471511	ENST00000409224		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-intron	ENST00000471511	ENST00000424583		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-intron	ENST00000471511	ENST00000410050		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-intron	ENST00000471511	ENST00000602424		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-5UTR	ENST00000471511	ENST00000409447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-intron	ENST00000471511	ENST00000162023		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RPRD1B	chr20	36694658	+	MEF2B	chr19	19267951	-
intron-3CDS	ENST00000514251	ENST00000269127		TCGA	RV	ACC	TCGA-OR-A5JK-01A	ZBTB38	chr3	141088788	+	C17orf64	chr17	58508542	+
intron-3CDS	ENST00000321464	ENST00000269127		TCGA	RV	ACC	TCGA-OR-A5JK-01A	ZBTB38	chr3	141088788	+	C17orf64	chr17	58508542	+
intron-3CDS	ENST00000441582	ENST00000269127		TCGA	RV	ACC	TCGA-OR-A5JK-01A	ZBTB38	chr3	141088788	+	C17orf64	chr17	58508542	+
intron-3CDS	ENST00000512327	ENST00000269127		TCGA	RV	ACC	TCGA-OR-A5JK-01A	ZBTB38	chr3	141088788	+	C17orf64	chr17	58508542	+
5CDS-intron	ENST00000299300	ENST00000359499		TCGA	RV	ACC	TCGA-OR-A5KT-01A	CCT2	chr12	69981786	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000299300	ENST00000304620		TCGA	RV	ACC	TCGA-OR-A5KT-01A	CCT2	chr12	69981786	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000544368	ENST00000359499		TCGA	RV	ACC	TCGA-OR-A5KT-01A	CCT2	chr12	69981786	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000544368	ENST00000304620		TCGA	RV	ACC	TCGA-OR-A5KT-01A	CCT2	chr12	69981786	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000543146	ENST00000359499		TCGA	RV	ACC	TCGA-OR-A5KT-01A	CCT2	chr12	69981786	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000543146	ENST00000304620		TCGA	RV	ACC	TCGA-OR-A5KT-01A	CCT2	chr12	69981786	+	KRT78	chr12	53242405	-
5UTR-3CDS	ENST00000416284	ENST00000262032		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-3UTR	ENST00000416284	ENST00000548601		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-5UTR	ENST00000416284	ENST00000431367		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-5UTR	ENST00000416284	ENST00000547167		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-5UTR	ENST00000416284	ENST00000547791		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-3CDS	ENST00000551619	ENST00000262032		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-3UTR	ENST00000551619	ENST00000548601		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000551619	ENST00000431367		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000551619	ENST00000547167		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000551619	ENST00000547791		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-3CDS	ENST00000550003	ENST00000262032		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-3UTR	ENST00000550003	ENST00000548601		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000550003	ENST00000431367		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000550003	ENST00000547167		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000550003	ENST00000547791		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-3CDS	ENST00000551449	ENST00000262032		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-3UTR	ENST00000551449	ENST00000548601		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-5UTR	ENST00000551449	ENST00000431367		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-5UTR	ENST00000551449	ENST00000547167		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5UTR-5UTR	ENST00000551449	ENST00000547791		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-3CDS	ENST00000549456	ENST00000262032		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-3UTR	ENST00000549456	ENST00000548601		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000549456	ENST00000431367		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000549456	ENST00000547167		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
intron-5UTR	ENST00000549456	ENST00000547791		TCGA	RV	ACC	TCGA-OR-A5K9-01A	FAM19A2	chr12	62585040	-	IKZF4	chr12	56418838	+
5CDS-5UTR	ENST00000534526	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
5CDS-5UTR	ENST00000534526	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
5CDS-5UTR	ENST00000534526	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
5CDS-5UTR	ENST00000534526	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
5CDS-5UTR	ENST00000534526	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
5CDS-intron	ENST00000534526	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000531134	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000531134	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000531134	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000531134	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000531134	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000531134	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000427716	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000427716	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000427716	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000427716	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000427716	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000427716	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000266482	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000266482	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000266482	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000266482	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000266482	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000266482	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000546442	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000546442	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000546442	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000546442	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000546442	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000546442	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000525053	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000525053	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000525053	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000525053	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000525053	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000525053	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000381025	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000381025	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000381025	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000381025	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000381025	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000381025	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000472289	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000472289	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000472289	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000472289	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000472289	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000472289	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000473513	ENST00000307378		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000473513	ENST00000537524		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000473513	ENST00000473830		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000473513	ENST00000452078		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000473513	ENST00000458504		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000473513	ENST00000390670		TCGA	RV	ACC	TCGA-OR-A5JY-01A	FGD4	chr12	32552893	+	SLCO1A2	chr12	21487643	-
5CDS-3UTR	ENST00000257209	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000257209	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000257209	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000257209	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000257209	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000445677	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000445677	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000445677	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000445677	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000445677	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000590592	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000590592	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000590592	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000590592	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000590592	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000359247	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000359247	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000359247	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000359247	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-3UTR	ENST00000359247	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000591635	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000591635	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000591635	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000591635	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000591635	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000592128	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000592128	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000592128	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000592128	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000592128	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000587493	ENST00000507951		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000587493	ENST00000509242		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000587493	ENST00000556177		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000587493	ENST00000261532		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
intron-3UTR	ENST00000587493	ENST00000380887		TCGA	RV	ACC	TCGA-OR-A5KY-01A	FHOD3	chr18	33952707	+	ESRRB	chr14	76948359	+
5CDS-5UTR	ENST00000355630	ENST00000491545		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000355630	ENST00000435456		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000355630	ENST00000402844		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000355630	ENST00000544408		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000355630	ENST00000542412		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000396617	ENST00000491545		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000396617	ENST00000435456		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000396617	ENST00000402844		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000396617	ENST00000544408		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000396617	ENST00000542412		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402042	ENST00000491545		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402042	ENST00000435456		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402042	ENST00000402844		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402042	ENST00000544408		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402042	ENST00000542412		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000466278	ENST00000491545		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000466278	ENST00000435456		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000466278	ENST00000402844		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000466278	ENST00000544408		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000466278	ENST00000542412		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000407029	ENST00000491545		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000407029	ENST00000435456		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000407029	ENST00000402844		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000407029	ENST00000544408		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000407029	ENST00000542412		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402630	ENST00000491545		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402630	ENST00000435456		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402630	ENST00000402844		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402630	ENST00000544408		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000402630	ENST00000542412		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MKL1	chr22	40859225	-	SLC25A17	chr22	41175129	-
5CDS-intron	ENST00000438925	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000438925	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000438925	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000438925	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000438925	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000370782	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000370782	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000370782	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000370782	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000370782	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327238	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327238	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327238	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327238	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327238	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327277	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327277	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327277	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327277	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000327277	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000355839	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000355839	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000355839	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000355839	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000355839	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483626	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483626	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483626	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483626	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483626	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	MMS19	chr10	99218083	-	NDUFV1	chr11	67375697	+
intron-5UTR	ENST00000593786	ENST00000216951		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000593786	ENST00000541098		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000593786	ENST00000451957		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-5UTR	ENST00000374796	ENST00000216951		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000374796	ENST00000541098		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000374796	ENST00000451957		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5UTR-5UTR	ENST00000359003	ENST00000216951		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5UTR-intron	ENST00000359003	ENST00000541098		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5UTR-intron	ENST00000359003	ENST00000451957		TCGA	RV	ACC	TCGA-OR-A5LO-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5CDS-5UTR	ENST00000275015	ENST00000370939		TCGA	RV	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44232719	-	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000275015	ENST00000323557		TCGA	RV	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44232719	-	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000275015	ENST00000244426		TCGA	RV	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44232719	-	FBXO9	chr6	52935855	+
5CDS-intron	ENST00000275015	ENST00000461222		TCGA	RV	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44232719	-	FBXO9	chr6	52935855	+
Frame-shit	ENST00000265563	ENST00000430379		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
Frame-shit	ENST00000265563	ENST00000319017		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
5CDS-5UTR	ENST00000265563	ENST00000544097		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000454963	ENST00000430379		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000454963	ENST00000319017		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
5CDS-5UTR	ENST00000454963	ENST00000544097		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
Frame-shit	ENST00000296446	ENST00000430379		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
Frame-shit	ENST00000296446	ENST00000319017		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
5CDS-5UTR	ENST00000296446	ENST00000544097		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	PRKAR2A	chr3	48845082	-	SLC25A20	chr3	48929505	-
Frame-shit	ENST00000358701	ENST00000453996		TCGA	RV	ACC	TCGA-OR-A5JP-01A	QSOX2	chr9	139137322	-	CTU2	chr16	88781268	+
Frame-shit	ENST00000358701	ENST00000378384		TCGA	RV	ACC	TCGA-OR-A5JP-01A	QSOX2	chr9	139137322	-	CTU2	chr16	88781268	+
Frame-shit	ENST00000358701	ENST00000312060		TCGA	RV	ACC	TCGA-OR-A5JP-01A	QSOX2	chr9	139137322	-	CTU2	chr16	88781268	+
Frame-shit	ENST00000358701	ENST00000567949		TCGA	RV	ACC	TCGA-OR-A5JP-01A	QSOX2	chr9	139137322	-	CTU2	chr16	88781268	+
Frame-shit	ENST00000423245	ENST00000360761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000354983		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000352832		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000442258		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000416767		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000502264		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000515411		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000510115		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000503485		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000515165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000507510		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000514181		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000515765		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000507336		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000514079		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000507896		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000512389		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000513689		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000513964		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000505165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000507609		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000514717		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000510366		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000429973		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000359106		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000423245	ENST00000358244		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000360761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000354983		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000352832		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000442258		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000416767		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000502264		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000515411		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000510115		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000503485		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000515165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000507510		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000514181		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000515765		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000507336		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000514079		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000507896		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000512389		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000513689		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000513964		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000505165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000507609		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000514717		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000510366		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000429973		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000359106		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000317905	ENST00000358244		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000360761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000354983		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000352832		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000442258		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000416767		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000502264		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000515411		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000510115		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000503485		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000515165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000507510		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000514181		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000515765		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000507336		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000514079		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000507896		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000512389		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000513689		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000513964		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000505165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000507609		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000514717		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000510366		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000429973		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000359106		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000420326	ENST00000358244		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000360761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000354983		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000352832		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000442258		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000416767		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000502264		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000515411		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000510115		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000503485		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000515165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000507510		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000514181		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000515765		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000507336		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000514079		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000507896		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000512389		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000513689		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000513964		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000505165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000507609		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000514717		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000510366		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000429973		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000359106		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000340830	ENST00000358244		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000360761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000354983		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000352832		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000442258		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000416767		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000502264		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000515411		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000510115		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000503485		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000515165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000507510		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000514181		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000515765		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000507336		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000514079		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000507896		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000512389		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000513689		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000513964		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000505165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000507609		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000514717		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000510366		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000429973		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000359106		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
Frame-shit	ENST00000584999	ENST00000358244		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000360761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000354983		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000352832		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000442258		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000416767		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000502264		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000515411		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000510115		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000503485		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000515165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000507510		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000514181		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000515765		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000507336		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000514079		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000507896		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000512389		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000513689		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000513964		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000505165		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000507609		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000514717		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000510366		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000429973		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000359106		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
intron-3CDS	ENST00000443199	ENST00000358244		TCGA	RV	ACC	TCGA-OR-A5JP-01A	RECQL5	chr17	73654378	-	CACNA1G	chr17	48667832	+
5UTR-3CDS	ENST00000361757	ENST00000221399		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SBNO2	chr19	1174171	-	TULP2	chr19	49392888	-
5UTR-3CDS	ENST00000587024	ENST00000221399		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SBNO2	chr19	1174171	-	TULP2	chr19	49392888	-
intron-3CDS	ENST00000438103	ENST00000221399		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SBNO2	chr19	1174171	-	TULP2	chr19	49392888	-
5UTR-5UTR	ENST00000262160	ENST00000535628		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
5UTR-5UTR	ENST00000262160	ENST00000588982		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
5UTR-5UTR	ENST00000262160	ENST00000586438		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
5UTR-5UTR	ENST00000262160	ENST00000590800		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
5UTR-5UTR	ENST00000262160	ENST00000332053		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000402690	ENST00000535628		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000402690	ENST00000588982		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000402690	ENST00000586438		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000402690	ENST00000590800		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000402690	ENST00000332053		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000356825	ENST00000535628		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000356825	ENST00000588982		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000356825	ENST00000586438		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000356825	ENST00000590800		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000356825	ENST00000332053		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000586040	ENST00000535628		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000586040	ENST00000588982		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000586040	ENST00000586438		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000586040	ENST00000590800		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000586040	ENST00000332053		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000591214	ENST00000535628		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000591214	ENST00000588982		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000591214	ENST00000586438		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000591214	ENST00000590800		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000591214	ENST00000332053		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000587353	ENST00000535628		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000587353	ENST00000588982		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000587353	ENST00000586438		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000587353	ENST00000590800		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
intron-5UTR	ENST00000587353	ENST00000332053		TCGA	RV	ACC	TCGA-OU-A5PI-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45567494	-
5CDS-3UTR	ENST00000355528	ENST00000396613		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000355528	ENST00000377959		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000355528	ENST00000377960		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000355528	ENST00000474050		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000397466	ENST00000396613		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000397466	ENST00000377959		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000397466	ENST00000377960		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000397466	ENST00000474050		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000539345	ENST00000396613		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000539345	ENST00000377959		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000539345	ENST00000377960		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
5CDS-3UTR	ENST00000539345	ENST00000474050		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
intron-3UTR	ENST00000576691	ENST00000396613		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
intron-3UTR	ENST00000576691	ENST00000377959		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
intron-3UTR	ENST00000576691	ENST00000377960		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
intron-3UTR	ENST00000576691	ENST00000474050		TCGA	RV	ACC	TCGA-OR-A5J1-01A	TBCD	chr17	80842078	+	GLIPR2	chr9	36147783	+
In-frame	ENST00000377227	ENST00000309007		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000377227	ENST00000292385		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000377227	ENST00000393565		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000377227	ENST00000393563		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000377227	ENST00000512501		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000377219	ENST00000309007		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000377219	ENST00000292385		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000377219	ENST00000393565		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000377219	ENST00000393563		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000377219	ENST00000512501		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000506128	ENST00000309007		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000506128	ENST00000292385		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000506128	ENST00000393565		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000506128	ENST00000393563		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000506128	ENST00000512501		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000511320	ENST00000309007		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000511320	ENST00000292385		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
In-frame	ENST00000511320	ENST00000393565		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000511320	ENST00000393563		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5CDS-intron	ENST00000511320	ENST00000512501		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5UTR-3CDS	ENST00000503273	ENST00000309007		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5UTR-3CDS	ENST00000503273	ENST00000292385		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5UTR-3CDS	ENST00000503273	ENST00000393565		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5UTR-intron	ENST00000503273	ENST00000393563		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
5UTR-intron	ENST00000503273	ENST00000512501		TCGA	RV	ACC	TCGA-OR-A5J1-01A	UIMC1	chr5	176370336	-	DBN1	chr5	176895900	-
intron-3CDS	ENST00000406625	ENST00000405592		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000406625	ENST00000406652		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000406625	ENST00000407270		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000406625	ENST00000406911		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000406625	ENST00000405094		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-intron	ENST00000406625	ENST00000472767		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000498475	ENST00000405592		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000498475	ENST00000406652		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000498475	ENST00000407270		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000498475	ENST00000406911		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-3CDS	ENST00000498475	ENST00000405094		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
intron-intron	ENST00000498475	ENST00000472767		TCGA	RV	ACC	TCGA-OR-A5KY-01A	ASB3	chr2	54013958	-	MTA3	chr2	42867313	+
5UTR-3CDS	ENST00000339788	ENST00000380494		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000339788	ENST00000405807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000339788	ENST00000261415		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-intron	ENST00000339788	ENST00000508692		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000320816	ENST00000380494		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000320816	ENST00000405807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000320816	ENST00000261415		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-intron	ENST00000320816	ENST00000508692		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000545653	ENST00000380494		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000545653	ENST00000405807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-3CDS	ENST00000545653	ENST00000261415		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5UTR-intron	ENST00000545653	ENST00000508692		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000509337	ENST00000380494		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000509337	ENST00000405807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000509337	ENST00000261415		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-intron	ENST00000509337	ENST00000508692		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000512525	ENST00000380494		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000512525	ENST00000405807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000512525	ENST00000261415		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-intron	ENST00000512525	ENST00000508692		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39424906	-	COL4A3BP	chr5	74755006	-
5CDS-intron	ENST00000371269	ENST00000257261		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000371269	ENST00000522056		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000371269	ENST00000278840		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000371269	ENST00000521849		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000371269	ENST00000574708		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000371269	ENST00000522639		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000371269	ENST00000517839		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000257261		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000522056		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000278840		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000521849		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000574708		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000522639		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000537443	ENST00000517839		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000257261		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000522056		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000278840		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000521849		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000574708		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000522639		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
intron-intron	ENST00000535035	ENST00000517839		TCGA	RV	ACC	TCGA-OR-A5J7-01A	DHCR24	chr1	55315306	-	FADS2	chr11	61588853	+
Frame-shit	ENST00000311127	ENST00000393469		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
Frame-shit	ENST00000311127	ENST00000423114		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
Frame-shit	ENST00000311127	ENST00000469902		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
5CDS-5UTR	ENST00000311127	ENST00000314584		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
5CDS-5UTR	ENST00000311127	ENST00000430155		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
5CDS-5UTR	ENST00000311127	ENST00000465475		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
intron-3CDS	ENST00000477536	ENST00000393469		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
intron-3CDS	ENST00000477536	ENST00000423114		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
intron-3CDS	ENST00000477536	ENST00000469902		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
intron-5UTR	ENST00000477536	ENST00000314584		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
intron-5UTR	ENST00000477536	ENST00000430155		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
intron-5UTR	ENST00000477536	ENST00000465475		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124839530	-
5CDS-3UTR	ENST00000260386	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-3UTR	ENST00000260386	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-3UTR	ENST00000260386	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-intron	ENST00000260386	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-intron	ENST00000260386	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-intron	ENST00000260386	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-intron	ENST00000260386	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-intron	ENST00000260386	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5J9-01A	ITPKA	chr15	41786614	+	NUSAP1	chr15	41634584	+
5CDS-5UTR	ENST00000311604	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
5CDS-5UTR	ENST00000311604	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
5CDS-5UTR	ENST00000311604	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
5CDS-5UTR	ENST00000311604	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
5CDS-intron	ENST00000311604	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000381775	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000381775	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000381775	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000381775	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-intron	ENST00000381775	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000405957	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000405957	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000405957	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000405957	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-intron	ENST00000405957	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000406638	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000406638	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000406638	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000406638	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-intron	ENST00000406638	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000485341	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000485341	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000485341	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000485341	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-intron	ENST00000485341	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000599825	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000599825	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000599825	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-5UTR	ENST00000599825	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-intron	ENST00000599825	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J1-01A	LSP1	chr11	1874427	+	SYT8	chr11	1856327	+
intron-3CDS	ENST00000310137	ENST00000318312		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000310137	ENST00000537537		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000310137	ENST00000455748		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000310137	ENST00000529766		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000310137	ENST00000393994		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3CDS	ENST00000393979	ENST00000318312		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000393979	ENST00000537537		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000393979	ENST00000455748		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000393979	ENST00000529766		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000393979	ENST00000393994		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3CDS	ENST00000409372	ENST00000318312		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000409372	ENST00000537537		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000409372	ENST00000455748		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000409372	ENST00000529766		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000409372	ENST00000393994		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
3UTR-3CDS	ENST00000443702	ENST00000318312		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
3UTR-intron	ENST00000443702	ENST00000537537		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
3UTR-intron	ENST00000443702	ENST00000455748		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
3UTR-3UTR	ENST00000443702	ENST00000529766		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
3UTR-3UTR	ENST00000443702	ENST00000393994		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3CDS	ENST00000409738	ENST00000318312		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000409738	ENST00000537537		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000409738	ENST00000455748		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000409738	ENST00000529766		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000409738	ENST00000393994		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3CDS	ENST00000461478	ENST00000318312		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000461478	ENST00000537537		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-intron	ENST00000461478	ENST00000455748		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000461478	ENST00000529766		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
intron-3UTR	ENST00000461478	ENST00000393994		TCGA	RV	ACC	TCGA-OR-A5J1-01A	RBM14	chr11	66386032	+	BBS1	chr11	66283011	+
In-frame	ENST00000319540	ENST00000348405		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000513858		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000395310		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000443462		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000509142		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000326950		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000432794		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000311785		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000448323		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000505472		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000500777		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000508502		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000355196		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000264405		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000505984		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000319540	ENST00000508479		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
5CDS-intron	ENST00000319540	ENST00000436790		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000348405		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000513858		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000395310		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000443462		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000509142		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000326950		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000432794		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000311785		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000448323		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000505472		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000500777		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000508502		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000355196		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000264405		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000505984		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000273908	ENST00000508479		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
5CDS-intron	ENST00000273908	ENST00000436790		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000348405		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000513858		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000395310		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000443462		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000509142		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000326950		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000432794		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000311785		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000448323		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000505472		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000500777		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000508502		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000355196		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000264405		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000505984		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000282709	ENST00000508479		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
5CDS-intron	ENST00000282709	ENST00000436790		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCD5	chr4	83719459	-	SEC31A	chr4	83765662	-
In-frame	ENST00000545472	ENST00000375742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000545472	ENST00000375755		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000545472	ENST00000375750		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000545472	ENST00000534153		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000545472	ENST00000375703		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000545472	ENST00000375740		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000545472	ENST00000431848		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000482280		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000395853		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000430216		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000486924		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000416549		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000456839		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000478326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000458144		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000419269		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000414412		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000549746		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000427735		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000457742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000497157		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000435700		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000436559		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000439816		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000460275		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000549604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000441395		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000441401		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000578225		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000473342		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000448617		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000436192		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000436004		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000490125		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000457917		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000480915		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000443040		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000545472	ENST00000448169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000375742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000375755		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000375750		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000534153		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000375703		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000375740		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
In-frame	ENST00000296257	ENST00000431848		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000482280		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000395853		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000430216		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000486924		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000416549		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000456839		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000478326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000458144		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000419269		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000414412		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000549746		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000427735		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000457742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000497157		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000435700		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000436559		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000439816		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000460275		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000549604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000441395		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000441401		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000578225		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000473342		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000448617		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000436192		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000436004		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000490125		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000457917		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000480915		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000443040		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
5CDS-intron	ENST00000296257	ENST00000448169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000375742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000375755		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000375750		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000534153		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000375703		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000375740		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-3CDS	ENST00000427465	ENST00000431848		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000482280		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000395853		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000430216		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000486924		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000416549		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000456839		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000478326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000458144		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000419269		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000414412		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000549746		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000427735		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000457742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000497157		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000435700		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000436559		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000439816		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000460275		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000549604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000441395		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000441401		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000578225		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000473342		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000448617		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000436192		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000436004		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000490125		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000457917		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000480915		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000443040		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
intron-intron	ENST00000427465	ENST00000448169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000375742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000375755		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000375750		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000534153		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000375703		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000375740		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-3CDS	ENST00000465201	ENST00000431848		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000482280		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000395853		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000430216		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000486924		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000416549		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000456839		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000478326		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000458144		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000419269		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000414412		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000549746		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000427735		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000457742		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000497157		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000435700		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000436559		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000439816		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000460275		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000549604		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000441395		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000441401		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000578225		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000473342		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000448617		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000436192		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000436004		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000490125		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000457917		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000480915		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000443040		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
3UTR-intron	ENST00000465201	ENST00000448169		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SENP2	chr3	185316812	+	MSH5	chr6	31726543	+
Frame-shit	ENST00000283206	ENST00000295408		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112785928	+
Frame-shit	ENST00000283206	ENST00000421804		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112785928	+
In-frame	ENST00000283206	ENST00000409780		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112785928	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112785928	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112785928	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112785928	+
5CDS-5UTR	ENST00000377227	ENST00000361189		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000377227	ENST00000361557		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000377227	ENST00000511624		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000377219	ENST00000361189		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000377219	ENST00000361557		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000377219	ENST00000511624		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000506128	ENST00000361189		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000506128	ENST00000361557		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000506128	ENST00000511624		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000511320	ENST00000361189		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000511320	ENST00000361557		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
5CDS-5UTR	ENST00000511320	ENST00000511624		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
intron-5UTR	ENST00000503273	ENST00000361189		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
intron-5UTR	ENST00000503273	ENST00000361557		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
intron-5UTR	ENST00000503273	ENST00000511624		TCGA	RV	ACC	TCGA-OR-A5JS-01A	UIMC1	chr5	176409470	-	PJA2	chr5	108719221	-
In-frame	ENST00000310301	ENST00000223208		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000310301	ENST00000541543		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000310301	ENST00000343969		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000310301	ENST00000489512		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
5CDS-5UTR	ENST00000310301	ENST00000495702		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000395969	ENST00000223208		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000395969	ENST00000541543		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000395969	ENST00000343969		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000395969	ENST00000489512		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
5CDS-5UTR	ENST00000395969	ENST00000495702		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
intron-3CDS	ENST00000466017	ENST00000223208		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
intron-3CDS	ENST00000466017	ENST00000541543		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
intron-3CDS	ENST00000466017	ENST00000343969		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
intron-3CDS	ENST00000466017	ENST00000489512		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
intron-5UTR	ENST00000466017	ENST00000495702		TCGA	RV	ACC	TCGA-OR-A5KZ-01A	VPS41	chr7	38794302	-	CEP41	chr7	130067859	-
In-frame	ENST00000380358	ENST00000583539		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
In-frame	ENST00000380358	ENST00000337432		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
5CDS-intron	ENST00000380358	ENST00000487921		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
5CDS-intron	ENST00000380358	ENST00000421782		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
In-frame	ENST00000358181	ENST00000583539		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
In-frame	ENST00000358181	ENST00000337432		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
5CDS-intron	ENST00000358181	ENST00000487921		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
5CDS-intron	ENST00000358181	ENST00000421782		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
In-frame	ENST00000330494	ENST00000583539		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
In-frame	ENST00000330494	ENST00000337432		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
5CDS-intron	ENST00000330494	ENST00000487921		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
5CDS-intron	ENST00000330494	ENST00000421782		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
intron-3CDS	ENST00000570758	ENST00000583539		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
intron-3CDS	ENST00000570758	ENST00000337432		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
intron-intron	ENST00000570758	ENST00000487921		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
intron-intron	ENST00000570758	ENST00000421782		TCGA	RV	ACC	TCGA-OR-A5KY-01A	CHD3	chr17	7797253	+	RAD51C	chr17	56787220	+
Frame-shit	ENST00000597960	ENST00000253669		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
Frame-shit	ENST00000597960	ENST00000448593		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000597960	ENST00000593360		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
In-frame	ENST00000610101	ENST00000253669		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
In-frame	ENST00000610101	ENST00000448593		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000610101	ENST00000593360		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
Frame-shit	ENST00000596558	ENST00000253669		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
Frame-shit	ENST00000596558	ENST00000448593		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000596558	ENST00000593360		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
In-frame	ENST00000222308	ENST00000253669		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
In-frame	ENST00000222308	ENST00000448593		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000222308	ENST00000593360		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
In-frame	ENST00000608443	ENST00000253669		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
In-frame	ENST00000608443	ENST00000448593		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000608443	ENST00000593360		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
Frame-shit	ENST00000453489	ENST00000253669		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
Frame-shit	ENST00000453489	ENST00000448593		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000453489	ENST00000593360		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FKBP8	chr19	18652489	-	HAUS8	chr19	17184145	-
5CDS-5UTR	ENST00000416426	ENST00000570565		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000416426	ENST00000442502		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000416426	ENST00000340813		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000416426	ENST00000451037		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000416426	ENST00000285273		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000416426	ENST00000571918		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000284073	ENST00000570565		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000284073	ENST00000442502		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000284073	ENST00000340813		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000284073	ENST00000451037		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000284073	ENST00000285273		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000284073	ENST00000571918		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000322684	ENST00000570565		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000322684	ENST00000442502		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000322684	ENST00000340813		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000322684	ENST00000451037		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000322684	ENST00000285273		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000322684	ENST00000571918		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000442934	ENST00000570565		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000442934	ENST00000442502		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000442934	ENST00000340813		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000442934	ENST00000451037		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000442934	ENST00000285273		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000442934	ENST00000571918		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000579180	ENST00000570565		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000579180	ENST00000442502		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000579180	ENST00000340813		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000579180	ENST00000451037		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000579180	ENST00000285273		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000579180	ENST00000571918		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000579505	ENST00000570565		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000579505	ENST00000442502		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000579505	ENST00000340813		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000579505	ENST00000451037		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000579505	ENST00000285273		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
3UTR-intron	ENST00000579505	ENST00000571918		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MSI2	chr17	55607085	+	CA10	chr17	50149753	-
Frame-shit	ENST00000372398	ENST00000347136		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
Frame-shit	ENST00000372398	ENST00000372406		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
Frame-shit	ENST00000372398	ENST00000372410		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
5CDS-intron	ENST00000372398	ENST00000415344		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-3CDS	ENST00000493042	ENST00000347136		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-3CDS	ENST00000493042	ENST00000372406		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-3CDS	ENST00000493042	ENST00000372410		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-intron	ENST00000493042	ENST00000415344		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-3CDS	ENST00000458469	ENST00000347136		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-3CDS	ENST00000458469	ENST00000372406		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-3CDS	ENST00000458469	ENST00000372410		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
intron-intron	ENST00000458469	ENST00000415344		TCGA	RV	ACC	TCGA-OR-A5J9-01A	NCS1	chr9	132935006	+	GPR107	chr9	132889762	+
5UTR-intron	ENST00000362042	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000362042	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000362042	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000362042	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000585291	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000585291	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000585291	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000585291	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000357480	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000357480	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000357480	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
5UTR-intron	ENST00000357480	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000361665	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000361665	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000361665	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000361665	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000579481	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000579481	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000579481	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000579481	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000582155	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000582155	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000582155	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000582155	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000583378	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000583378	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000583378	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000583378	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000536222	ENST00000525037		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000536222	ENST00000530173		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000536222	ENST00000322157		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
intron-intron	ENST00000536222	ENST00000544660		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NFE2L1	chr17	46125824	+	NPEPPS	chr17	45673719	+
Frame-shit	ENST00000553106	ENST00000323666		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000553106	ENST00000546753		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000553106	ENST00000261220		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000553106	ENST00000550777		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000553106	ENST00000551840		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000307000	ENST00000323666		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000307000	ENST00000546753		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000307000	ENST00000261220		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000307000	ENST00000550777		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
Frame-shit	ENST00000307000	ENST00000551840		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
5UTR-3CDS	ENST00000551988	ENST00000323666		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
5UTR-3CDS	ENST00000551988	ENST00000546753		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
5UTR-3CDS	ENST00000551988	ENST00000261220		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
5UTR-3CDS	ENST00000551988	ENST00000550777		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
5UTR-3CDS	ENST00000551988	ENST00000551840		TCGA	RV	ACC	TCGA-OR-A5JA-01A	PAH	chr12	103288513	-	METAP2	chr12	95906577	+
5CDS-5UTR	ENST00000264896	ENST00000361781		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000264896	ENST00000429490		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000264896	ENST00000492601		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000264896	ENST00000361543		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000452464	ENST00000361781		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000452464	ENST00000429490		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000452464	ENST00000492601		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000452464	ENST00000361543		TCGA	RV	ACC	TCGA-OR-A5JM-01A	SCARB2	chr4	77134580	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000295569	ENST00000420581		TCGA	RV	ACC	TCGA-OR-A5JC-01A	FAM19A4	chr3	68929881	-	LMOD3	chr3	69171560	-
5CDS-5UTR	ENST00000295569	ENST00000489031		TCGA	RV	ACC	TCGA-OR-A5JC-01A	FAM19A4	chr3	68929881	-	LMOD3	chr3	69171560	-
5CDS-5UTR	ENST00000295569	ENST00000475434		TCGA	RV	ACC	TCGA-OR-A5JC-01A	FAM19A4	chr3	68929881	-	LMOD3	chr3	69171560	-
intron-3UTR	ENST00000568630	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
intron-3UTR	ENST00000568630	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000545763	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000389936	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000219905	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000566586	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000558123		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000260359		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000450318		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000450592		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000559596		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000414849		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000560747		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
5CDS-3UTR	ENST00000570161	ENST00000560177		TCGA	RV	ACC	TCGA-OR-A5JY-01A	MGA	chr15	41991357	+	NUSAP1	chr15	41641296	+
Frame-shit	ENST00000343702	ENST00000553106		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
Frame-shit	ENST00000343702	ENST00000307000		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
5CDS-5UTR	ENST00000343702	ENST00000551988		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
Frame-shit	ENST00000344911	ENST00000553106		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
Frame-shit	ENST00000344911	ENST00000307000		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
5CDS-5UTR	ENST00000344911	ENST00000551988		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
In-frame	ENST00000538383	ENST00000553106		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
In-frame	ENST00000538383	ENST00000307000		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
5CDS-5UTR	ENST00000538383	ENST00000551988		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
Frame-shit	ENST00000553059	ENST00000553106		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
Frame-shit	ENST00000553059	ENST00000307000		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
5CDS-5UTR	ENST00000553059	ENST00000551988		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
intron-3CDS	ENST00000552603	ENST00000553106		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
intron-3CDS	ENST00000552603	ENST00000307000		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
intron-5UTR	ENST00000552603	ENST00000551988		TCGA	RV	ACC	TCGA-OR-A5JA-01A	NTN4	chr12	96076483	-	PAH	chr12	103288696	-
In-frame	ENST00000281187	ENST00000566621		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
In-frame	ENST00000281187	ENST00000437989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
In-frame	ENST00000281187	ENST00000569302		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000281187	ENST00000567389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000281187	ENST00000562877		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000281187	ENST00000338183		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000281187	ENST00000565792		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000281187	ENST00000562489		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000281187	ENST00000563167		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
In-frame	ENST00000525095	ENST00000566621		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
In-frame	ENST00000525095	ENST00000437989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
In-frame	ENST00000525095	ENST00000569302		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000525095	ENST00000567389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000525095	ENST00000562877		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000525095	ENST00000338183		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000525095	ENST00000565792		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000525095	ENST00000562489		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000525095	ENST00000563167		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-3CDS	ENST00000530402	ENST00000566621		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-3CDS	ENST00000530402	ENST00000437989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-3CDS	ENST00000530402	ENST00000569302		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-5UTR	ENST00000530402	ENST00000567389		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-5UTR	ENST00000530402	ENST00000562877		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-5UTR	ENST00000530402	ENST00000338183		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-intron	ENST00000530402	ENST00000565792		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-intron	ENST00000530402	ENST00000562489		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
3UTR-intron	ENST00000530402	ENST00000563167		TCGA	RV	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134104947	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000296326	ENST00000419333		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000296326	ENST00000292823		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000296326	ENST00000431016		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000296326	ENST00000491544		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
intron-intron	ENST00000488508	ENST00000419333		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
intron-intron	ENST00000488508	ENST00000292823		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
intron-intron	ENST00000488508	ENST00000431016		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
intron-intron	ENST00000488508	ENST00000491544		TCGA	RV	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941244	-
5UTR-3CDS	ENST00000378609	ENST00000219476		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000378609	ENST00000382538		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000378609	ENST00000401874		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000378609	ENST00000353929		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000378609	ENST00000439673		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000378609	ENST00000350773		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000378609	ENST00000568454		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3UTR	ENST00000378609	ENST00000568366		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000219476		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000382538		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000401874		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000353929		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000439673		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000350773		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3CDS	ENST00000472614	ENST00000568454		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
5UTR-3UTR	ENST00000472614	ENST00000568366		TCGA	RV	ACC	TCGA-P6-A5OF-01A	GNB1	chr1	1770629	-	TSC2	chr16	2129033	+
Frame-shit	ENST00000080059	ENST00000395324		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000080059	ENST00000229022		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000080059	ENST00000549336		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000080059	ENST00000550325		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000080059	ENST00000535672		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000354334	ENST00000395324		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000354334	ENST00000229022		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000354334	ENST00000549336		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000354334	ENST00000550325		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000354334	ENST00000535672		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000552960	ENST00000395324		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000552960	ENST00000229022		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000552960	ENST00000549336		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000552960	ENST00000550325		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
Frame-shit	ENST00000552960	ENST00000535672		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000380610	ENST00000395324		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000380610	ENST00000229022		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000380610	ENST00000549336		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000380610	ENST00000550325		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000380610	ENST00000535672		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000427332	ENST00000395324		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000427332	ENST00000229022		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000427332	ENST00000549336		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000427332	ENST00000550325		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000427332	ENST00000535672		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000488927	ENST00000395324		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000488927	ENST00000229022		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000488927	ENST00000549336		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000488927	ENST00000550325		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
intron-3CDS	ENST00000488927	ENST00000535672		TCGA	RV	ACC	TCGA-OR-A5JM-01A	HDAC7	chr12	48213550	-	VDR	chr12	48258960	-
5CDS-intron	ENST00000332780	ENST00000408982		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000332780	ENST00000262477		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000332780	ENST00000537505		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000332780	ENST00000546142		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000332780	ENST00000341923		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000332780	ENST00000570487		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000476495	ENST00000408982		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000476495	ENST00000262477		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000476495	ENST00000537505		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000476495	ENST00000546142		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000476495	ENST00000341923		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000476495	ENST00000570487		TCGA	RV	ACC	TCGA-OR-A5JR-01A	KLHDC8B	chr3	49213918	+	RABEP1	chr17	5283828	+
5UTR-5UTR	ENST00000342362	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-5UTR	ENST00000342362	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-intron	ENST00000342362	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-intron	ENST00000342362	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-5UTR	ENST00000382002	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-5UTR	ENST00000382002	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-intron	ENST00000382002	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5UTR-intron	ENST00000382002	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000231423	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000231423	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000231423	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000231423	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000513753	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000513753	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000513753	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000513753	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000397391	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000397391	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000397391	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000397391	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000348262	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000348262	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000348262	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000348262	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000542609	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000542609	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000542609	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000542609	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000310101	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000310101	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000310101	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000310101	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000511486	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000511486	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000511486	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000511486	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000509934	ENST00000504376		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-5UTR	ENST00000509934	ENST00000382254		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000509934	ENST00000522262		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
intron-intron	ENST00000509934	ENST00000521384		TCGA	RV	ACC	TCGA-OR-A5KX-01A	PRLR	chr5	35118163	-	CDH12	chr5	22505473	-
5CDS-5UTR	ENST00000535977	ENST00000409413		TCGA	RV	ACC	TCGA-OR-A5LO-01A	RAB40C	chr16	668260	+	C16orf11	chr16	613256	+
5CDS-5UTR	ENST00000539661	ENST00000409413		TCGA	RV	ACC	TCGA-OR-A5LO-01A	RAB40C	chr16	668260	+	C16orf11	chr16	613256	+
5CDS-5UTR	ENST00000538492	ENST00000409413		TCGA	RV	ACC	TCGA-OR-A5LO-01A	RAB40C	chr16	668260	+	C16orf11	chr16	613256	+
5CDS-5UTR	ENST00000248139	ENST00000409413		TCGA	RV	ACC	TCGA-OR-A5LO-01A	RAB40C	chr16	668260	+	C16orf11	chr16	613256	+
In-frame	ENST00000262241	ENST00000422945		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000556068		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000554442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000328724		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000350249		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000445439		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000334743		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000557095		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000556260		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000556946		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000262241	ENST00000557714		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
In-frame	ENST00000570597	ENST00000422945		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000556068		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000554442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000328724		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000350249		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000445439		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000334743		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000557095		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000556260		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000556946		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000570597	ENST00000557714		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RCOR1	chr14	103148315	+	PPP2R5C	chr14	102323023	+
5CDS-3UTR	ENST00000435041	ENST00000506888		TCGA	RV	ACC	TCGA-OR-A5JY-01A	UBE2J1	chr6	90062258	-	C6orf165	chr6	88173738	+
5CDS-3UTR	ENST00000435041	ENST00000507897		TCGA	RV	ACC	TCGA-OR-A5JY-01A	UBE2J1	chr6	90062258	-	C6orf165	chr6	88173738	+
3UTR-intron	ENST00000341267	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5JM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
In-frame	ENST00000304457	ENST00000361445		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
5CDS-5UTR	ENST00000304457	ENST00000376838		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
5CDS-intron	ENST00000304457	ENST00000495435		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
In-frame	ENST00000376936	ENST00000361445		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
5CDS-5UTR	ENST00000376936	ENST00000376838		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
5CDS-intron	ENST00000376936	ENST00000495435		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
Frame-shit	ENST00000544779	ENST00000361445		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
5CDS-5UTR	ENST00000544779	ENST00000376838		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
5CDS-intron	ENST00000544779	ENST00000495435		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
intron-3CDS	ENST00000485606	ENST00000361445		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
intron-5UTR	ENST00000485606	ENST00000376838		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
intron-intron	ENST00000485606	ENST00000495435		TCGA	RV	ACC	TCGA-OR-A5J7-01A	EXOSC10	chr1	11139768	-	MTOR	chr1	11190834	-
Frame-shit	ENST00000269373	ENST00000155840		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FN3KRP	chr17	80684478	+	KCNQ1	chr11	2868997	+
Frame-shit	ENST00000269373	ENST00000335475		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FN3KRP	chr17	80684478	+	KCNQ1	chr11	2868997	+
5CDS-3UTR	ENST00000269373	ENST00000526095		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FN3KRP	chr17	80684478	+	KCNQ1	chr11	2868997	+
Frame-shit	ENST00000535965	ENST00000155840		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FN3KRP	chr17	80684478	+	KCNQ1	chr11	2868997	+
Frame-shit	ENST00000535965	ENST00000335475		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FN3KRP	chr17	80684478	+	KCNQ1	chr11	2868997	+
5CDS-3UTR	ENST00000535965	ENST00000526095		TCGA	RV	ACC	TCGA-OR-A5KX-01A	FN3KRP	chr17	80684478	+	KCNQ1	chr11	2868997	+
5CDS-intron	ENST00000282561	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5K1-01A	GJA1	chr6	121770873	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000282561	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5K1-01A	GJA1	chr6	121770873	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000282561	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5K1-01A	GJA1	chr6	121770873	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000282561	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5K1-01A	GJA1	chr6	121770873	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000282561	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5K1-01A	GJA1	chr6	121770873	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000282561	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5K1-01A	GJA1	chr6	121770873	+	STAT6	chr12	57496773	-
intron-5UTR	ENST00000477049	ENST00000373840		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SETX	chr9	135230304	-	RAB14	chr9	123955697	-
5UTR-5UTR	ENST00000224140	ENST00000373840		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SETX	chr9	135230304	-	RAB14	chr9	123955697	-
5UTR-5UTR	ENST00000393220	ENST00000373840		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SETX	chr9	135230304	-	RAB14	chr9	123955697	-
5UTR-5UTR	ENST00000372169	ENST00000373840		TCGA	RV	ACC	TCGA-OR-A5JE-01A	SETX	chr9	135230304	-	RAB14	chr9	123955697	-
Frame-shit	ENST00000431639	ENST00000538132		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000431639	ENST00000217426		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
5CDS-intron	ENST00000431639	ENST00000468908		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000316024	ENST00000538132		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000316024	ENST00000217426		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
5CDS-intron	ENST00000316024	ENST00000468908		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000457584	ENST00000538132		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000457584	ENST00000217426		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
5CDS-intron	ENST00000457584	ENST00000468908		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000396463	ENST00000538132		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000396463	ENST00000217426		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
5CDS-intron	ENST00000396463	ENST00000468908		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000534050	ENST00000538132		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
Frame-shit	ENST00000534050	ENST00000217426		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
5CDS-intron	ENST00000534050	ENST00000468908		TCGA	RV	ACC	TCGA-OR-A5LO-01A	WRAP53	chr17	7593019	+	AHCY	chr20	32868971	-
5CDS-5UTR	ENST00000515408	ENST00000505432		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000515408	ENST00000261796		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000389063	ENST00000505432		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000389063	ENST00000261796		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
5UTR-5UTR	ENST00000543319	ENST00000505432		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
5UTR-5UTR	ENST00000543319	ENST00000261796		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
intron-5UTR	ENST00000504961	ENST00000505432		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
intron-5UTR	ENST00000504961	ENST00000261796		TCGA	RV	ACC	TCGA-P6-A5OF-01A	DCP2	chr5	112328467	+	IL17B	chr5	148756588	-
In-frame	ENST00000328432	ENST00000343267		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PPP1R2	chr3	195269727	-	APOD	chr3	195296006	-
Frame-shit	ENST00000283033	ENST00000375533		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11836333	-	BAMBI	chr10	28970187	+
Frame-shit	ENST00000356957	ENST00000375533		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11836333	-	BAMBI	chr10	28970187	+
intron-3CDS	ENST00000570917	ENST00000375533		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11836333	-	BAMBI	chr10	28970187	+
intron-3CDS	ENST00000282605	ENST00000265339		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
intron-3UTR	ENST00000282605	ENST00000511807		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
3UTR-3CDS	ENST00000515554	ENST00000265339		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
3UTR-3UTR	ENST00000515554	ENST00000511807		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
5UTR-3CDS	ENST00000361895	ENST00000265339		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
5UTR-3UTR	ENST00000361895	ENST00000511807		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
intron-3CDS	ENST00000402835	ENST00000265339		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
intron-3UTR	ENST00000402835	ENST00000511807		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
intron-3CDS	ENST00000395003	ENST00000265339		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
intron-3UTR	ENST00000395003	ENST00000511807		TCGA	RV	ACC	TCGA-OR-A5JK-01A	PHF15	chr5	133861701	+	UBE2B	chr5	133725916	+
Frame-shit	ENST00000345093	ENST00000548567		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
Frame-shit	ENST00000345093	ENST00000351328		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
Frame-shit	ENST00000345093	ENST00000542324		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
5UTR-3CDS	ENST00000394013	ENST00000548567		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
5UTR-3CDS	ENST00000394013	ENST00000351328		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
5UTR-3CDS	ENST00000394013	ENST00000542324		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
In-frame	ENST00000552656	ENST00000548567		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
In-frame	ENST00000552656	ENST00000351328		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
In-frame	ENST00000552656	ENST00000542324		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
In-frame	ENST00000552244	ENST00000548567		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
In-frame	ENST00000552244	ENST00000351328		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
In-frame	ENST00000552244	ENST00000542324		TCGA	RV	ACC	TCGA-OR-A5KU-01A	RNF41	chr12	56607742	-	CS	chr12	56669979	-
Frame-shit	ENST00000371269	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000537443	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000535035	ENST00000272167		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000366837		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000467015		TCGA	RV	ACC	TCGA-OR-A5K2-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
Frame-shit	ENST00000341394	ENST00000397420		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000341394	ENST00000322008		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000341394	ENST00000397421		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000341394	ENST00000528011		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
5CDS-intron	ENST00000341394	ENST00000525181		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
Frame-shit	ENST00000389645	ENST00000397420		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000389645	ENST00000322008		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000389645	ENST00000397421		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000389645	ENST00000528011		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
5CDS-intron	ENST00000389645	ENST00000525181		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
Frame-shit	ENST00000532820	ENST00000397420		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000532820	ENST00000322008		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000532820	ENST00000397421		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000532820	ENST00000528011		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
5CDS-intron	ENST00000532820	ENST00000525181		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
Frame-shit	ENST00000530820	ENST00000397420		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000530820	ENST00000322008		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000530820	ENST00000397421		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000530820	ENST00000528011		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
5CDS-intron	ENST00000530820	ENST00000525181		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
Frame-shit	ENST00000529307	ENST00000397420		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000529307	ENST00000322008		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000529307	ENST00000397421		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
In-frame	ENST00000529307	ENST00000528011		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
5CDS-intron	ENST00000529307	ENST00000525181		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
3UTR-3CDS	ENST00000533657	ENST00000397420		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
3UTR-3CDS	ENST00000533657	ENST00000322008		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
3UTR-3CDS	ENST00000533657	ENST00000397421		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
3UTR-3CDS	ENST00000533657	ENST00000528011		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
3UTR-intron	ENST00000533657	ENST00000525181		TCGA	RV	ACC	TCGA-OR-A5J8-01A	CAPRIN1	chr11	34112225	+	CD151	chr11	838133	+
5CDS-intron	ENST00000309311	ENST00000264818		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000524462		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000525621		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000529370		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000529422		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000264818		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000524462		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000525621		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000529370		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000529422		TCGA	RV	ACC	TCGA-OR-A5JG-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
In-frame	ENST00000257209	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000257209	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000257209	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000257209	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000257209	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000257209	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
5CDS-intron	ENST00000257209	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000445677	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000445677	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000445677	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000445677	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000445677	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000445677	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
5CDS-intron	ENST00000445677	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000590592	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000590592	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000590592	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000590592	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000590592	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000590592	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
5CDS-intron	ENST00000590592	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000359247	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000359247	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000359247	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000359247	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000359247	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
In-frame	ENST00000359247	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
5CDS-intron	ENST00000359247	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000591635	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000591635	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000591635	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000591635	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000591635	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000591635	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-intron	ENST00000591635	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000592128	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000592128	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000592128	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000592128	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000592128	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000592128	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-intron	ENST00000592128	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000587493	ENST00000358232		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000587493	ENST00000351393		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000587493	ENST00000442325		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000587493	ENST00000423854		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000587493	ENST00000350494		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-3CDS	ENST00000587493	ENST00000542824		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
intron-intron	ENST00000587493	ENST00000542050		TCGA	RV	ACC	TCGA-OU-A5PI-01A	FHOD3	chr18	33952707	+	ELP2	chr18	33722789	+
5CDS-intron	ENST00000445593	ENST00000349938		TCGA	RV	ACC	TCGA-OR-A5JP-01A	LAPTM4B	chr8	98788336	+	ARMC9	chr2	232220510	+
5CDS-3UTR	ENST00000445593	ENST00000483477		TCGA	RV	ACC	TCGA-OR-A5JP-01A	LAPTM4B	chr8	98788336	+	ARMC9	chr2	232220510	+
5CDS-intron	ENST00000521545	ENST00000349938		TCGA	RV	ACC	TCGA-OR-A5JP-01A	LAPTM4B	chr8	98788336	+	ARMC9	chr2	232220510	+
5CDS-3UTR	ENST00000521545	ENST00000483477		TCGA	RV	ACC	TCGA-OR-A5JP-01A	LAPTM4B	chr8	98788336	+	ARMC9	chr2	232220510	+
In-frame	ENST00000374012	ENST00000374273		TCGA	RV	ACC	TCGA-OR-A5JT-01A	PHF20	chr20	34487570	+	SPAG4	chr20	34207117	+
5CDS-intron	ENST00000374012	ENST00000462896		TCGA	RV	ACC	TCGA-OR-A5JT-01A	PHF20	chr20	34487570	+	SPAG4	chr20	34207117	+
3UTR-3CDS	ENST00000439301	ENST00000374273		TCGA	RV	ACC	TCGA-OR-A5JT-01A	PHF20	chr20	34487570	+	SPAG4	chr20	34207117	+
3UTR-intron	ENST00000439301	ENST00000462896		TCGA	RV	ACC	TCGA-OR-A5JT-01A	PHF20	chr20	34487570	+	SPAG4	chr20	34207117	+
3UTR-3CDS	ENST00000481202	ENST00000374273		TCGA	RV	ACC	TCGA-OR-A5JT-01A	PHF20	chr20	34487570	+	SPAG4	chr20	34207117	+
3UTR-intron	ENST00000481202	ENST00000462896		TCGA	RV	ACC	TCGA-OR-A5JT-01A	PHF20	chr20	34487570	+	SPAG4	chr20	34207117	+
5UTR-3CDS	ENST00000294168	ENST00000419333		TCGA	RV	ACC	TCGA-OR-A5JM-01A	TAF6L	chr11	62538962	+	PCYT1A	chr3	195969511	-
5UTR-3CDS	ENST00000294168	ENST00000292823		TCGA	RV	ACC	TCGA-OR-A5JM-01A	TAF6L	chr11	62538962	+	PCYT1A	chr3	195969511	-
5UTR-3CDS	ENST00000294168	ENST00000431016		TCGA	RV	ACC	TCGA-OR-A5JM-01A	TAF6L	chr11	62538962	+	PCYT1A	chr3	195969511	-
5UTR-intron	ENST00000294168	ENST00000491544		TCGA	RV	ACC	TCGA-OR-A5JM-01A	TAF6L	chr11	62538962	+	PCYT1A	chr3	195969511	-
5UTR-3CDS	ENST00000335999	ENST00000333924		TCGA	RV	ACC	TCGA-OR-A5KX-01A	NCKAP5L	chr12	50222105	-	BCDIN3D	chr12	50232798	-
5UTR-3CDS	ENST00000480927	ENST00000333924		TCGA	RV	ACC	TCGA-OR-A5KX-01A	NCKAP5L	chr12	50222105	-	BCDIN3D	chr12	50232798	-
Frame-shit	ENST00000373588	ENST00000487099		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NR5A1	chr9	127262369	-	NR6A1	chr9	127287152	-
Frame-shit	ENST00000373588	ENST00000373584		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NR5A1	chr9	127262369	-	NR6A1	chr9	127287152	-
Frame-shit	ENST00000373588	ENST00000416460		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NR5A1	chr9	127262369	-	NR6A1	chr9	127287152	-
Frame-shit	ENST00000373588	ENST00000344523		TCGA	RV	ACC	TCGA-OR-A5J7-01A	NR5A1	chr9	127262369	-	NR6A1	chr9	127287152	-
5CDS-5UTR	ENST00000378953	ENST00000317058		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	C5orf56	chr5	131755632	+	CCDC101	chr16	28592376	+
5CDS-5UTR	ENST00000337752	ENST00000317058		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	C5orf56	chr5	131755632	+	CCDC101	chr16	28592376	+
5CDS-5UTR	ENST00000378947	ENST00000317058		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	C5orf56	chr5	131755632	+	CCDC101	chr16	28592376	+
5CDS-5UTR	ENST00000407797	ENST00000317058		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	C5orf56	chr5	131755632	+	CCDC101	chr16	28592376	+
intron-5UTR	ENST00000464024	ENST00000317058		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	C5orf56	chr5	131755632	+	CCDC101	chr16	28592376	+
5CDS-5UTR	ENST00000361682	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000361682	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000403184	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000403184	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000403710	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000403710	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000407537	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000407537	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000406520	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000406520	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000449653	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000449653	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000493893	ENST00000339468		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000493893	ENST00000403503		TCGA	RV	ACC	TCGA-OR-A5JY-01A	COMT	chr22	19951822	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000356840	ENST00000377154		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-5UTR	ENST00000356840	ENST00000543825		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000451227		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000446761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000549299		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000441440		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000458123		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000400698		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000230223		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000453123		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000458372		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000444009		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000550240		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000548546		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000418692		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000356840	ENST00000421859		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-5UTR	ENST00000349606	ENST00000377154		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-5UTR	ENST00000349606	ENST00000543825		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000451227		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000446761		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000549299		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000441440		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000458123		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000400698		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000230223		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000453123		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000458372		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000444009		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000550240		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000548546		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000418692		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
intron-intron	ENST00000349606	ENST00000421859		TCGA	RV	ACC	TCGA-OR-A5JP-01A	MYLIP	chr6	16130978	+	OR5V1	chr6	29324054	-
Frame-shit	ENST00000300935	ENST00000252590		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RAB8A	chr19	16222835	+	PLVAP	chr19	17477004	-
3UTR-3CDS	ENST00000588105	ENST00000252590		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RAB8A	chr19	16222835	+	PLVAP	chr19	17477004	-
Frame-shit	ENST00000586682	ENST00000252590		TCGA	RV	ACC	TCGA-OR-A5K5-01A	RAB8A	chr19	16222835	+	PLVAP	chr19	17477004	-
3UTR-3UTR	ENST00000341267	ENST00000355327		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
3UTR-3UTR	ENST00000341267	ENST00000261862		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
3UTR-intron	ENST00000341267	ENST00000357769		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
3UTR-intron	ENST00000341267	ENST00000567838		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000331224	ENST00000355327		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000331224	ENST00000261862		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000331224	ENST00000357769		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000331224	ENST00000567838		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000556051	ENST00000355327		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000556051	ENST00000261862		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
intron-intron	ENST00000556051	ENST00000357769		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
intron-intron	ENST00000556051	ENST00000567838		TCGA	RV	ACC	TCGA-OR-A5J2-01A	DLK1	chr14	101201464	+	THSD4	chr15	72072881	+
intron-intron	ENST00000331483	ENST00000267101		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000331483	ENST00000450146		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000331483	ENST00000415288		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000331483	ENST00000553131		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000331483	ENST00000411731		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000331483	ENST00000549832		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000576390	ENST00000267101		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000576390	ENST00000450146		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000576390	ENST00000415288		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000576390	ENST00000553131		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000576390	ENST00000411731		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000576390	ENST00000549832		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000439918	ENST00000267101		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000439918	ENST00000450146		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000439918	ENST00000415288		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000439918	ENST00000553131		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000439918	ENST00000411731		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000439918	ENST00000549832		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000472244	ENST00000267101		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000472244	ENST00000450146		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000472244	ENST00000415288		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000472244	ENST00000553131		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000472244	ENST00000411731		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000472244	ENST00000549832		TCGA	RV	ACC	TCGA-PK-A5H9-01A	P4HB	chr17	79801042	-	ERBB3	chr12	56492035	+
5UTR-3CDS	ENST00000520358	ENST00000222254		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TSPAN18	chr11	44748837	+	PIK3R2	chr19	18276970	+
5UTR-3CDS	ENST00000520358	ENST00000593731		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TSPAN18	chr11	44748837	+	PIK3R2	chr19	18276970	+
intron-3CDS	ENST00000340160	ENST00000222254		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TSPAN18	chr11	44748837	+	PIK3R2	chr19	18276970	+
intron-3CDS	ENST00000340160	ENST00000593731		TCGA	RV	ACC	TCGA-OR-A5KY-01A	TSPAN18	chr11	44748837	+	PIK3R2	chr19	18276970	+
In-frame	ENST00000283033	ENST00000288861		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11829873	-	CIB4	chr2	26863435	-
5CDS-intron	ENST00000283033	ENST00000405346		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11829873	-	CIB4	chr2	26863435	-
In-frame	ENST00000356957	ENST00000288861		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11829873	-	CIB4	chr2	26863435	-
5CDS-intron	ENST00000356957	ENST00000405346		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11829873	-	CIB4	chr2	26863435	-
intron-3CDS	ENST00000570917	ENST00000288861		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11829873	-	CIB4	chr2	26863435	-
intron-intron	ENST00000570917	ENST00000405346		TCGA	RV	ACC	TCGA-OR-A5K5-01A	TXNDC11	chr16	11829873	-	CIB4	chr2	26863435	-
Frame-shit	ENST00000553612	ENST00000261534		TCGA	RV	ACC	TCGA-OR-A5JL-01A	GTF2A1	chr14	81686833	-	POMT2	chr14	77769286	-
5CDS-5UTR	ENST00000553612	ENST00000556880		TCGA	RV	ACC	TCGA-OR-A5JL-01A	GTF2A1	chr14	81686833	-	POMT2	chr14	77769286	-
intron-3CDS	ENST00000434192	ENST00000261534		TCGA	RV	ACC	TCGA-OR-A5JL-01A	GTF2A1	chr14	81686833	-	POMT2	chr14	77769286	-
intron-5UTR	ENST00000434192	ENST00000556880		TCGA	RV	ACC	TCGA-OR-A5JL-01A	GTF2A1	chr14	81686833	-	POMT2	chr14	77769286	-
Frame-shit	ENST00000550735	ENST00000416293		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
Frame-shit	ENST00000550735	ENST00000261733		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
Frame-shit	ENST00000551404	ENST00000416293		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
Frame-shit	ENST00000551404	ENST00000261733		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
Frame-shit	ENST00000547305	ENST00000416293		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
Frame-shit	ENST00000547305	ENST00000261733		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
3UTR-3CDS	ENST00000546394	ENST00000416293		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
3UTR-3CDS	ENST00000546394	ENST00000261733		TCGA	RV	ACC	TCGA-OR-A5J7-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112241663	+
Frame-shit	ENST00000339788	ENST00000264914		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000339788	ENST00000396151		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000339788	ENST00000565165		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5CDS-intron	ENST00000339788	ENST00000521800		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000320816	ENST00000264914		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000320816	ENST00000396151		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000320816	ENST00000565165		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5CDS-intron	ENST00000320816	ENST00000521800		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000545653	ENST00000264914		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000545653	ENST00000396151		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
Frame-shit	ENST00000545653	ENST00000565165		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5CDS-intron	ENST00000545653	ENST00000521800		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
In-frame	ENST00000509337	ENST00000264914		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
In-frame	ENST00000509337	ENST00000396151		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
In-frame	ENST00000509337	ENST00000565165		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5CDS-intron	ENST00000509337	ENST00000521800		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5UTR-3CDS	ENST00000512525	ENST00000264914		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5UTR-3CDS	ENST00000512525	ENST00000396151		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5UTR-3CDS	ENST00000512525	ENST00000565165		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
5UTR-intron	ENST00000512525	ENST00000521800		TCGA	RV	ACC	TCGA-OR-A5J1-01A	DAB2	chr5	39392467	-	ARSB	chr5	78265015	-
3UTR-intron	ENST00000341267	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000341267	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331224	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556051	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5LM-01A	DLK1	chr14	101201464	+	STAT6	chr12	57496773	-
5UTR-3CDS	ENST00000324896	ENST00000368433		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000324896	ENST00000315144		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000324896	ENST00000368432		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000324896	ENST00000368431		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000324896	ENST00000292180		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000324896	ENST00000487371		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000324896	ENST00000405236		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-5UTR	ENST00000324896	ENST00000295530		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-intron	ENST00000324896	ENST00000368428		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000353920	ENST00000368433		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000353920	ENST00000315144		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000353920	ENST00000368432		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000353920	ENST00000368431		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000353920	ENST00000292180		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000353920	ENST00000487371		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000353920	ENST00000405236		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-5UTR	ENST00000353920	ENST00000295530		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-intron	ENST00000353920	ENST00000368428		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000346152	ENST00000368433		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000346152	ENST00000315144		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000346152	ENST00000368432		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000346152	ENST00000368431		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000346152	ENST00000292180		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000346152	ENST00000487371		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000346152	ENST00000405236		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-5UTR	ENST00000346152	ENST00000295530		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-intron	ENST00000346152	ENST00000368428		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000416070	ENST00000368433		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000416070	ENST00000315144		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000416070	ENST00000368432		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000416070	ENST00000368431		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000416070	ENST00000292180		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000416070	ENST00000487371		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000416070	ENST00000405236		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-5UTR	ENST00000416070	ENST00000295530		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-intron	ENST00000416070	ENST00000368428		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000443166	ENST00000368433		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000443166	ENST00000315144		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000443166	ENST00000368432		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000443166	ENST00000368431		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3CDS	ENST00000443166	ENST00000292180		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000443166	ENST00000487371		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-3UTR	ENST00000443166	ENST00000405236		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-5UTR	ENST00000443166	ENST00000295530		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
5UTR-intron	ENST00000443166	ENST00000368428		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3CDS	ENST00000438130	ENST00000368433		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3CDS	ENST00000438130	ENST00000315144		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3CDS	ENST00000438130	ENST00000368432		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3CDS	ENST00000438130	ENST00000368431		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3CDS	ENST00000438130	ENST00000292180		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3UTR	ENST00000438130	ENST00000487371		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-3UTR	ENST00000438130	ENST00000405236		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-5UTR	ENST00000438130	ENST00000295530		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
intron-intron	ENST00000438130	ENST00000368428		TCGA	RV	ACC	TCGA-OR-A5J7-01A	GTF2I	chr7	74072394	+	FLAD1	chr1	154960581	+
In-frame	ENST00000398141	ENST00000263119		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000398141	ENST00000405822		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000398141	ENST00000398319		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000398141	ENST00000337989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000398141	ENST00000485008		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000398145	ENST00000263119		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000398145	ENST00000405822		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000398145	ENST00000398319		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000398145	ENST00000337989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000398145	ENST00000485008		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000402105	ENST00000263119		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000402105	ENST00000405822		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000402105	ENST00000398319		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000402105	ENST00000337989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000402105	ENST00000485008		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000336873	ENST00000263119		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000336873	ENST00000405822		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000336873	ENST00000398319		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
In-frame	ENST00000336873	ENST00000337989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000336873	ENST00000485008		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000493455	ENST00000263119		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000493455	ENST00000405822		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000493455	ENST00000398319		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000493455	ENST00000337989		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
intron-intron	ENST00000493455	ENST00000485008		TCGA	RV	ACC	TCGA-OR-A5JY-01A	HPS4	chr22	26875231	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000313949	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
Frame-shit	ENST00000313949	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000371098	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000371098	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
Frame-shit	ENST00000371075	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
Frame-shit	ENST00000371075	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371100	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371100	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000371099	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000371099	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371102	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371102	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
Frame-shit	ENST00000464624	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
Frame-shit	ENST00000464624	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000306120	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000306120	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371095	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371095	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371085	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000371085	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000354359	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000354359	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000265620	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000265620	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000306090	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
In-frame	ENST00000306090	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000371081	ENST00000394936		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
intron-3CDS	ENST00000371081	ENST00000394934		TCGA	RV	ACC	TCGA-OR-A5JG-01A	GNAS	chr20	57486241	+	PSAP	chr10	73579657	-
5CDS-intron	ENST00000346916	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000346916	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000346916	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000346916	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000346916	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000346916	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000545507	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000545507	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000545507	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000545507	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000545507	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000545507	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000333511	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000333511	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000333511	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000333511	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000333511	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000333511	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000353555	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000353555	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000353555	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000353555	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000353555	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000353555	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
intron-intron	ENST00000574970	ENST00000300134		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
intron-intron	ENST00000574970	ENST00000538913		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
intron-intron	ENST00000574970	ENST00000543873		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
intron-intron	ENST00000574970	ENST00000556155		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
intron-intron	ENST00000574970	ENST00000537215		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
intron-intron	ENST00000574970	ENST00000454075		TCGA	RV	ACC	TCGA-OR-A5J9-01A	BSG	chr19	583492	+	STAT6	chr12	57496773	-
5CDS-5UTR	ENST00000558518	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000558518	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000558518	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-5UTR	ENST00000557933	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000557933	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000557933	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-5UTR	ENST00000455727	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000455727	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000455727	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-5UTR	ENST00000535915	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000535915	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000535915	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-5UTR	ENST00000545707	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000545707	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000545707	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-5UTR	ENST00000558013	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000558013	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
5CDS-intron	ENST00000558013	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
intron-5UTR	ENST00000560628	ENST00000586600		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
intron-intron	ENST00000560628	ENST00000221554		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
intron-intron	ENST00000560628	ENST00000587019		TCGA	RV	ACC	TCGA-OR-A5K5-01A	LDLR	chr19	11200291	+	CCDC130	chr19	13842989	+
In-frame	ENST00000295569	ENST00000398559		TCGA	RV	ACC	TCGA-OR-A5LB-01A	FAM19A4	chr3	68929881	-	TMF1	chr3	69097713	-
In-frame	ENST00000295569	ENST00000543976		TCGA	RV	ACC	TCGA-OR-A5LB-01A	FAM19A4	chr3	68929881	-	TMF1	chr3	69097713	-
5CDS-intron	ENST00000295569	ENST00000489370		TCGA	RV	ACC	TCGA-OR-A5LB-01A	FAM19A4	chr3	68929881	-	TMF1	chr3	69097713	-
5CDS-intron	ENST00000361866	ENST00000270189		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000361866	ENST00000429089		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000361866	ENST00000220809		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000361866	ENST00000352041		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000361866	ENST00000519510		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000361866	ENST00000429710		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000361866	ENST00000524009		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000270189		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000429089		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000220809		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000352041		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000519510		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000429710		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000498614	ENST00000524009		TCGA	RV	ACC	TCGA-PK-A5HA-01A	COL6A1	chr21	47424962	+	PLAT	chr8	42051245	-
Frame-shit	ENST00000408946	ENST00000552432		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
In-frame	ENST00000408946	ENST00000547379		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000408946	ENST00000549465		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000408946	ENST00000552024		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000408946	ENST00000261187		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000408946	ENST00000543448		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000408946	ENST00000549588		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
Frame-shit	ENST00000398213	ENST00000552432		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
In-frame	ENST00000398213	ENST00000547379		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000398213	ENST00000549465		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000398213	ENST00000552024		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000398213	ENST00000261187		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000398213	ENST00000543448		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000398213	ENST00000549588		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-3CDS	ENST00000302533	ENST00000552432		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-3CDS	ENST00000302533	ENST00000547379		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-intron	ENST00000302533	ENST00000549465		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-intron	ENST00000302533	ENST00000552024		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-intron	ENST00000302533	ENST00000261187		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-intron	ENST00000302533	ENST00000543448		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
5UTR-intron	ENST00000302533	ENST00000549588		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-3CDS	ENST00000557259	ENST00000552432		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-3CDS	ENST00000557259	ENST00000547379		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000557259	ENST00000549465		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000557259	ENST00000552024		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000557259	ENST00000261187		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000557259	ENST00000543448		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000557259	ENST00000549588		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-3CDS	ENST00000547925	ENST00000552432		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-3CDS	ENST00000547925	ENST00000547379		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000547925	ENST00000549465		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000547925	ENST00000552024		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000547925	ENST00000261187		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000547925	ENST00000543448		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
3UTR-intron	ENST00000547925	ENST00000549588		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-3CDS	ENST00000454792	ENST00000552432		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-3CDS	ENST00000454792	ENST00000547379		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000454792	ENST00000549465		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000454792	ENST00000552024		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000454792	ENST00000261187		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000454792	ENST00000543448		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000454792	ENST00000549588		TCGA	RV	ACC	TCGA-OR-A5KT-01A	WIBG	chr12	56297171	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000456518	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000456518	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000456518	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000456518	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000456518	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397174	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397174	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397174	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397174	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397174	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000402904	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000402904	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000402904	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000402904	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000402904	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361191	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361191	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361191	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361191	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361191	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397171	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397171	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397171	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397171	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000397171	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361705	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361705	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361705	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361705	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000361705	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000326197	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000326197	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000326197	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000326197	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000326197	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000372595	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000372595	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000372595	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000372595	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-intron	ENST00000372595	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000337495	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000337495	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000337495	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000337495	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000337495	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372596	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372596	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372596	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372596	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372596	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372597	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372597	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372597	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372597	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
intron-intron	ENST00000372597	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5UTR-intron	ENST00000472037	ENST00000476083		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5UTR-intron	ENST00000472037	ENST00000480186		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5UTR-intron	ENST00000472037	ENST00000377443		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5UTR-intron	ENST00000472037	ENST00000377436		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5UTR-intron	ENST00000472037	ENST00000377442		TCGA	RV	ACC	TCGA-OR-A5J7-01A	SCMH1	chr1	41499655	-	CA6	chr1	9009322	+
5CDS-5UTR	ENST00000371711	ENST00000568305		TCGA	RV	ACC	TCGA-OR-A5KY-01A	B4GALT5	chr20	48330113	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000371711	ENST00000374954		TCGA	RV	ACC	TCGA-OR-A5KY-01A	B4GALT5	chr20	48330113	-	ASIP	chr20	32848171	+
5CDS-intron	ENST00000321356	ENST00000460623		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000321356	ENST00000435154		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000321356	ENST00000449291		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000321356	ENST00000426292		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000321356	ENST00000276844		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000409769	ENST00000460623		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000409769	ENST00000435154		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000409769	ENST00000449291		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000409769	ENST00000426292		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000409769	ENST00000276844		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000434813	ENST00000460623		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000434813	ENST00000435154		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000434813	ENST00000449291		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000434813	ENST00000426292		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
5CDS-intron	ENST00000434813	ENST00000276844		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
intron-intron	ENST00000492793	ENST00000460623		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
intron-intron	ENST00000492793	ENST00000435154		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
intron-intron	ENST00000492793	ENST00000449291		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
intron-intron	ENST00000492793	ENST00000426292		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
intron-intron	ENST00000492793	ENST00000276844		TCGA	RV	ACC	TCGA-OR-A5L6-01A	CLK1	chr2	201719339	-	NAPRT1	chr8	144660113	-
Frame-shit	ENST00000375300	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000375300	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000375300	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000375300	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000375300	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000292055	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000292055	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000292055	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000292055	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000292055	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000375288	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000375288	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000375288	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000375288	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000375288	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000434315	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000434315	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000434315	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000434315	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000434315	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000542607	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000542607	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000542607	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000542607	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000542607	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000446921	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000446921	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000446921	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000446921	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000446921	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000488337	ENST00000377263		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000488337	ENST00000400904		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000488337	ENST00000537447		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000488337	ENST00000377258		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000488337	ENST00000377256		TCGA	RV	ACC	TCGA-OR-A5K5-01A	SIK3	chr11	116968859	-	CTNNBIP1	chr1	9910834	-
5UTR-3CDS	ENST00000251849	ENST00000314124		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000251849	ENST00000435575		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000251849	ENST00000435218		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000251849	ENST00000476331		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000251849	ENST00000431022		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000251849	ENST00000264728		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000442415	ENST00000314124		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000442415	ENST00000435575		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000442415	ENST00000435218		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000442415	ENST00000476331		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000442415	ENST00000431022		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000442415	ENST00000264728		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
intron-3CDS	ENST00000534997	ENST00000314124		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
intron-3CDS	ENST00000534997	ENST00000435575		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
intron-3CDS	ENST00000534997	ENST00000435218		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
intron-intron	ENST00000534997	ENST00000476331		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
intron-intron	ENST00000534997	ENST00000431022		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
intron-intron	ENST00000534997	ENST00000264728		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000542177	ENST00000314124		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000542177	ENST00000435575		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-3CDS	ENST00000542177	ENST00000435218		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000542177	ENST00000476331		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000542177	ENST00000431022		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
5UTR-intron	ENST00000542177	ENST00000264728		TCGA	RV	ACC	TCGA-OR-A5J7-01A	RAF1	chr3	12705312	-	TMEM40	chr3	12784006	-
Frame-shit	ENST00000354179	ENST00000333274		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
In-frame	ENST00000354179	ENST00000509503		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
5CDS-5UTR	ENST00000354179	ENST00000510359		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
Frame-shit	ENST00000439151	ENST00000333274		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
In-frame	ENST00000439151	ENST00000509503		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
5CDS-5UTR	ENST00000439151	ENST00000510359		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
Frame-shit	ENST00000347982	ENST00000333274		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
In-frame	ENST00000347982	ENST00000509503		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
5CDS-5UTR	ENST00000347982	ENST00000510359		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
intron-3CDS	ENST00000361032	ENST00000333274		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
intron-3CDS	ENST00000361032	ENST00000509503		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
intron-5UTR	ENST00000361032	ENST00000510359		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
intron-3CDS	ENST00000511258	ENST00000333274		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
intron-3CDS	ENST00000511258	ENST00000509503		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
intron-5UTR	ENST00000511258	ENST00000510359		TCGA	RV	ACC	TCGA-OR-A5JS-01A	NSD1	chr5	176619020	+	EFNA5	chr5	106717077	-
In-frame	ENST00000323013	ENST00000337959		TCGA	RV	ACC	TCGA-PK-A5HB-01A	RRP7A	chr22	42914011	-	PACSIN2	chr22	43275175	-
In-frame	ENST00000323013	ENST00000263246		TCGA	RV	ACC	TCGA-PK-A5HB-01A	RRP7A	chr22	42914011	-	PACSIN2	chr22	43275175	-
In-frame	ENST00000323013	ENST00000407585		TCGA	RV	ACC	TCGA-PK-A5HB-01A	RRP7A	chr22	42914011	-	PACSIN2	chr22	43275175	-
In-frame	ENST00000323013	ENST00000403744		TCGA	RV	ACC	TCGA-PK-A5HB-01A	RRP7A	chr22	42914011	-	PACSIN2	chr22	43275175	-
In-frame	ENST00000323013	ENST00000402229		TCGA	RV	ACC	TCGA-PK-A5HB-01A	RRP7A	chr22	42914011	-	PACSIN2	chr22	43275175	-
5UTR-3CDS	ENST00000426548	ENST00000336915		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
5UTR-3CDS	ENST00000426548	ENST00000584924		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
5UTR-3CDS	ENST00000330514	ENST00000336915		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
5UTR-3CDS	ENST00000330514	ENST00000584924		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
intron-3CDS	ENST00000590758	ENST00000336915		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
intron-3CDS	ENST00000590758	ENST00000584924		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
5UTR-3CDS	ENST00000592524	ENST00000336915		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
5UTR-3CDS	ENST00000592524	ENST00000584924		TCGA	RV	ACC	TCGA-OR-A5JS-01A	GJC1	chr17	42884762	-	SKAP1	chr17	46266862	-
Frame-shit	ENST00000327064	ENST00000592854		TCGA	RV	ACC	TCGA-OR-A5K5-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000327064	ENST00000397820		TCGA	RV	ACC	TCGA-OR-A5K5-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000344150	ENST00000592854		TCGA	RV	ACC	TCGA-OR-A5K5-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000344150	ENST00000397820		TCGA	RV	ACC	TCGA-OR-A5K5-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10979894	+
5UTR-3CDS	ENST00000342362	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000342362	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000342362	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-5UTR	ENST00000342362	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000382002	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000382002	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000382002	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
5UTR-5UTR	ENST00000382002	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000231423	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000231423	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000231423	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000231423	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000513753	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000513753	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000513753	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000513753	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000397391	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000397391	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000397391	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000397391	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000348262	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000348262	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000348262	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000348262	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000542609	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000542609	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000542609	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000542609	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000310101	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000310101	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000310101	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000310101	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000511486	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000511486	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000511486	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000511486	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000509934	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000509934	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000509934	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000509934	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5J1-01A	PRLR	chr5	35230370	-	CLPTM1L	chr5	1318568	-
In-frame	ENST00000301738	ENST00000219476		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
In-frame	ENST00000301738	ENST00000382538		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
In-frame	ENST00000301738	ENST00000401874		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
In-frame	ENST00000301738	ENST00000353929		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
In-frame	ENST00000301738	ENST00000439673		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
In-frame	ENST00000301738	ENST00000350773		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
In-frame	ENST00000301738	ENST00000568454		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
5CDS-intron	ENST00000301738	ENST00000568366		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000219476		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000382538		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000401874		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000353929		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000439673		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000350773		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000564195	ENST00000568454		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-intron	ENST00000564195	ENST00000568366		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000219476		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000382538		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000401874		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000353929		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000439673		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000350773		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-3CDS	ENST00000569689	ENST00000568454		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-intron	ENST00000569689	ENST00000568366		TCGA	RV	ACC	TCGA-OR-A5J1-01A	KCTD5	chr16	2747998	+	TSC2	chr16	2136194	+
intron-5UTR	ENST00000311604	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000311604	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000311604	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000311604	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000311604	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-5UTR	ENST00000381775	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000381775	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000381775	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000381775	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000381775	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-5UTR	ENST00000405957	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000405957	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000405957	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000405957	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000405957	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
5UTR-5UTR	ENST00000406638	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
5UTR-intron	ENST00000406638	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
5UTR-intron	ENST00000406638	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
5UTR-intron	ENST00000406638	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
5UTR-intron	ENST00000406638	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-5UTR	ENST00000485341	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000485341	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000485341	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000485341	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000485341	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-5UTR	ENST00000599825	ENST00000436964		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000599825	ENST00000535046		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000599825	ENST00000381968		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000599825	ENST00000341958		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
intron-intron	ENST00000599825	ENST00000483280		TCGA	RV	ACC	TCGA-OR-A5J7-01A	LSP1	chr11	1892642	+	SYT8	chr11	1849772	+
In-frame	ENST00000330387	ENST00000222481		TCGA	RV	ACC	TCGA-OR-A5JY-01A	CREB3L2	chr7	137686350	-	CPA2	chr7	129921944	+
In-frame	ENST00000456390	ENST00000222481		TCGA	RV	ACC	TCGA-OR-A5JY-01A	CREB3L2	chr7	137686350	-	CPA2	chr7	129921944	+
In-frame	ENST00000452463	ENST00000222481		TCGA	RV	ACC	TCGA-OR-A5JY-01A	CREB3L2	chr7	137686350	-	CPA2	chr7	129921944	+
intron-3CDS	ENST00000458726	ENST00000222481		TCGA	RV	ACC	TCGA-OR-A5JY-01A	CREB3L2	chr7	137686350	-	CPA2	chr7	129921944	+
5UTR-3CDS	ENST00000468127	ENST00000222481		TCGA	RV	ACC	TCGA-OR-A5JY-01A	CREB3L2	chr7	137686350	-	CPA2	chr7	129921944	+
In-frame	ENST00000433197	ENST00000258991		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
In-frame	ENST00000433197	ENST00000583097		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
In-frame	ENST00000433197	ENST00000584379		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
5CDS-intron	ENST00000433197	ENST00000581812		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000577567	ENST00000258991		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000577567	ENST00000583097		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000577567	ENST00000584379		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-intron	ENST00000577567	ENST00000581812		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000606895	ENST00000258991		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000606895	ENST00000583097		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000606895	ENST00000584379		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
intron-intron	ENST00000606895	ENST00000581812		TCGA	RV	ACC	TCGA-OR-A5K6-01A	ERN1	chr17	62141346	-	TEX2	chr17	62238293	-
Frame-shit	ENST00000395290	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000395290	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
Frame-shit	ENST00000358597	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000358597	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
Frame-shit	ENST00000395292	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000395292	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
In-frame	ENST00000310513	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000310513	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
Frame-shit	ENST00000361904	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000361904	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
intron-3CDS	ENST00000539455	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
intron-intron	ENST00000539455	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
Frame-shit	ENST00000531165	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000531165	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
Frame-shit	ENST00000532048	ENST00000263773		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000532048	ENST00000534003		TCGA	RV	ACC	TCGA-OR-A5LO-01A	CELF1	chr11	47505005	-	FNBP4	chr11	47741638	-
intron-intron	ENST00000339570	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000339570	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000415380	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000415380	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000261693	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000261693	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000376788	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000376788	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000546215	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000546215	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000535005	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000535005	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000541205	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000541205	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000540495	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000540495	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000544327	ENST00000322349		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
intron-intron	ENST00000544327	ENST00000547833		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCARB1	chr12	125262186	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000313949	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000378482		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000422612		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000545599		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000286824		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000488893		TCGA	RV	ACC	TCGA-OR-A5JK-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
In-frame	ENST00000304636	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000304636	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000304636	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000304636	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000304636	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
In-frame	ENST00000317840	ENST00000280326		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000317840	ENST00000503026		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000317840	ENST00000515390		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000317840	ENST00000515676		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000317840	ENST00000506600		TCGA	RV	ACC	TCGA-OR-A5J8-01A	COL3A1	chr2	189877472	+	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000354618	ENST00000316156		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-3CDS	ENST00000354618	ENST00000373150		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-3CDS	ENST00000354618	ENST00000373151		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-intron	ENST00000354618	ENST00000474796		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-intron	ENST00000354618	ENST00000373148		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-3CDS	ENST00000469141	ENST00000316156		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-3CDS	ENST00000469141	ENST00000373150		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-3CDS	ENST00000469141	ENST00000373151		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-intron	ENST00000469141	ENST00000474796		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
5UTR-intron	ENST00000469141	ENST00000373148		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
intron-3CDS	ENST00000466743	ENST00000316156		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
intron-3CDS	ENST00000466743	ENST00000373150		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
intron-3CDS	ENST00000466743	ENST00000373151		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
intron-intron	ENST00000466743	ENST00000474796		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
intron-intron	ENST00000466743	ENST00000373148		TCGA	RV	ACC	TCGA-OR-A5JZ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36645267	+
In-frame	ENST00000398841	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
In-frame	ENST00000398841	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000398841	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000398841	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000398841	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5UTR-3CDS	ENST00000565479	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5UTR-3CDS	ENST00000565479	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5UTR-intron	ENST00000565479	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5UTR-intron	ENST00000565479	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5UTR-intron	ENST00000565479	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000566134	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000566134	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000566134	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000566134	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000566134	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000398838	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000398838	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000398838	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000398838	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000398838	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000563788	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000563788	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000563788	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000563788	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000563788	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000566595	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000566595	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000566595	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000566595	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000566595	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
In-frame	ENST00000562641	ENST00000342129		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
In-frame	ENST00000562641	ENST00000340951		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000562641	ENST00000479452		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000562641	ENST00000475006		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000562641	ENST00000465160		TCGA	RV	ACC	TCGA-P6-A5OF-01A	YPEL3	chr16	30106573	-	EXD3	chr9	140218595	-
5CDS-5UTR	ENST00000545182	ENST00000455015		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000545182	ENST00000336832		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000545182	ENST00000423850		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000545182	ENST00000383817		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000545182	ENST00000430427		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-intron	ENST00000545182	ENST00000443115		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000280800	ENST00000455015		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000280800	ENST00000336832		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000280800	ENST00000423850		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000280800	ENST00000383817		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-5UTR	ENST00000280800	ENST00000430427		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
5CDS-intron	ENST00000280800	ENST00000443115		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000547163	ENST00000455015		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000547163	ENST00000336832		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000547163	ENST00000423850		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000547163	ENST00000383817		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000547163	ENST00000430427		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
intron-intron	ENST00000547163	ENST00000443115		TCGA	RV	ACC	TCGA-OR-A5L6-01A	PLBD2	chr12	113796695	+	CIDEC	chr3	9920195	-
Frame-shit	ENST00000585892	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
5CDS-3UTR	ENST00000585892	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
Frame-shit	ENST00000314646	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
5CDS-3UTR	ENST00000314646	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
Frame-shit	ENST00000359692	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
5CDS-3UTR	ENST00000359692	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
Frame-shit	ENST00000389253	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
5CDS-3UTR	ENST00000389253	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
Frame-shit	ENST00000355667	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
5CDS-3UTR	ENST00000355667	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
Frame-shit	ENST00000408974	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
5CDS-3UTR	ENST00000408974	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
intron-3CDS	ENST00000591819	ENST00000250237		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
intron-3UTR	ENST00000591819	ENST00000585885		TCGA	RV	ACC	TCGA-OR-A5K5-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10817978	+
intron-3CDS	ENST00000541179	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000541179	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
In-frame	ENST00000379749	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
In-frame	ENST00000379749	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
Frame-shit	ENST00000379747	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
Frame-shit	ENST00000379747	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
In-frame	ENST00000379743	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
In-frame	ENST00000379743	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000379742	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000379742	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000541481	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000541481	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000497145	ENST00000348225		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
intron-3CDS	ENST00000497145	ENST00000393083		TCGA	RV	ACC	TCGA-OR-A5J8-01A	POSTN	chr13	38136726	-	PTN	chr7	136938384	-
5CDS-intron	ENST00000263278	ENST00000355496		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HSD17B14	chr19	49335923	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000263278	ENST00000263265		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HSD17B14	chr19	49335923	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000263278	ENST00000596713		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HSD17B14	chr19	49335923	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000599157	ENST00000355496		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HSD17B14	chr19	49335923	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000599157	ENST00000263265		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HSD17B14	chr19	49335923	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000599157	ENST00000596713		TCGA	RV	ACC	TCGA-OR-A5J7-01A	HSD17B14	chr19	49335923	-	PLEKHA4	chr19	49344567	-
5UTR-3CDS	ENST00000219169	ENST00000415766		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
5UTR-3CDS	ENST00000219169	ENST00000561639		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
5UTR-3CDS	ENST00000219169	ENST00000388833		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
5UTR-intron	ENST00000219169	ENST00000562321		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-3CDS	ENST00000569436	ENST00000415766		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-3CDS	ENST00000569436	ENST00000561639		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-3CDS	ENST00000569436	ENST00000388833		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-intron	ENST00000569436	ENST00000562321		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-3CDS	ENST00000568396	ENST00000415766		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-3CDS	ENST00000568396	ENST00000561639		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-3CDS	ENST00000568396	ENST00000388833		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
intron-intron	ENST00000568396	ENST00000562321		TCGA	RV	ACC	TCGA-OR-A5K2-01A	NUTF2	chr16	67880888	+	TSNAXIP1	chr16	67861152	+
In-frame	ENST00000346178	ENST00000524958		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000346178	ENST00000354588		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000346178	ENST00000431002		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000346178	ENST00000532208		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000346178	ENST00000525675		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
In-frame	ENST00000356638	ENST00000524958		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000356638	ENST00000354588		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000356638	ENST00000431002		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000356638	ENST00000532208		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000356638	ENST00000525675		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534779	ENST00000524958		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534779	ENST00000354588		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534779	ENST00000431002		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534779	ENST00000532208		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534779	ENST00000525675		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
5UTR-3CDS	ENST00000540933	ENST00000524958		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
5UTR-3CDS	ENST00000540933	ENST00000354588		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
5UTR-3CDS	ENST00000540933	ENST00000431002		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
5UTR-3CDS	ENST00000540933	ENST00000532208		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
5UTR-3CDS	ENST00000540933	ENST00000525675		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534422	ENST00000524958		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534422	ENST00000354588		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534422	ENST00000431002		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534422	ENST00000532208		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
intron-3CDS	ENST00000534422	ENST00000525675		TCGA	RV	ACC	TCGA-OR-A5LD-01A	GANAB	chr11	62407099	-	C11orf48	chr11	62430805	-
In-frame	ENST00000309311	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5KT-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000309311	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5KT-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000600720	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5KT-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
intron-intron	ENST00000600720	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5KT-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
3UTR-3CDS	ENST00000376929	ENST00000404984		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000376929	ENST00000402050		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000376929	ENST00000438376		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000376929	ENST00000325979		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000376929	ENST00000497572		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000506690	ENST00000404984		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000506690	ENST00000402050		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000506690	ENST00000438376		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000506690	ENST00000325979		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-intron	ENST00000506690	ENST00000497572		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000389805	ENST00000404984		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000389805	ENST00000402050		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000389805	ENST00000438376		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000389805	ENST00000325979		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000389805	ENST00000497572		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000402874	ENST00000404984		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000402874	ENST00000402050		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000402874	ENST00000438376		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000402874	ENST00000325979		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000402874	ENST00000497572		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000510187	ENST00000404984		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000510187	ENST00000402050		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000510187	ENST00000438376		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000510187	ENST00000325979		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-intron	ENST00000510187	ENST00000497572		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000360718	ENST00000404984		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000360718	ENST00000402050		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000360718	ENST00000438376		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000360718	ENST00000325979		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000360718	ENST00000497572		TCGA	RV	ACC	TCGA-OR-A5LP-01A	SQSTM1	chr5	179264252	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000291825	ENST00000595483		TCGA	RV	ACC	TCGA-OR-A5J7-01A	PRX	chr19	40904527	-	BLVRB	chr19	40953953	-
intron-3CDS	ENST00000291825	ENST00000263368		TCGA	RV	ACC	TCGA-OR-A5J7-01A	PRX	chr19	40904527	-	BLVRB	chr19	40953953	-
Frame-shit	ENST00000324001	ENST00000595483		TCGA	RV	ACC	TCGA-OR-A5J7-01A	PRX	chr19	40904527	-	BLVRB	chr19	40953953	-
In-frame	ENST00000324001	ENST00000263368		TCGA	RV	ACC	TCGA-OR-A5J7-01A	PRX	chr19	40904527	-	BLVRB	chr19	40953953	-
intron-3CDS	ENST00000599513	ENST00000595483		TCGA	RV	ACC	TCGA-OR-A5J7-01A	PRX	chr19	40904527	-	BLVRB	chr19	40953953	-
intron-3CDS	ENST00000599513	ENST00000263368		TCGA	RV	ACC	TCGA-OR-A5J7-01A	PRX	chr19	40904527	-	BLVRB	chr19	40953953	-
In-frame	ENST00000405460	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000405460	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000405460	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
5CDS-5UTR	ENST00000405460	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
In-frame	ENST00000425867	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000425867	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000425867	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
5CDS-5UTR	ENST00000425867	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000450321	ENST00000320895		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000450321	ENST00000507807		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
intron-3CDS	ENST00000450321	ENST00000320927		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
intron-5UTR	ENST00000450321	ENST00000506641		TCGA	RV	ACC	TCGA-OR-A5JV-01A	GPR98	chr5	90281339	+	CLPTM1L	chr5	1318568	-
5CDS-5UTR	ENST00000377093	ENST00000370175		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377093	ENST00000406277		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000263934	ENST00000370175		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000263934	ENST00000406277		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377086	ENST00000370175		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377086	ENST00000406277		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377083	ENST00000370175		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377083	ENST00000406277		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377081	ENST00000370175		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5CDS-5UTR	ENST00000377081	ENST00000406277		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
intron-5UTR	ENST00000465635	ENST00000370175		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
intron-5UTR	ENST00000465635	ENST00000406277		TCGA	RV	ACC	TCGA-OR-A5J7-01A	KIF1B	chr1	10292492	+	FAM58A	chrX	152861645	-
5UTR-intron	ENST00000349938	ENST00000595483		TCGA	RV	ACC	TCGA-OR-A5JP-01A	ARMC9	chr2	232063412	+	BLVRB	chr19	40957399	-
5UTR-intron	ENST00000349938	ENST00000263368		TCGA	RV	ACC	TCGA-OR-A5JP-01A	ARMC9	chr2	232063412	+	BLVRB	chr19	40957399	-
intron-intron	ENST00000483477	ENST00000595483		TCGA	RV	ACC	TCGA-OR-A5JP-01A	ARMC9	chr2	232063412	+	BLVRB	chr19	40957399	-
intron-intron	ENST00000483477	ENST00000263368		TCGA	RV	ACC	TCGA-OR-A5JP-01A	ARMC9	chr2	232063412	+	BLVRB	chr19	40957399	-
5CDS-intron	ENST00000444961	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000444961	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000444961	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000444961	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000444961	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000448882	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000448882	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000448882	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000448882	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000448882	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557098	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557098	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557098	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557098	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557098	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000298902	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000298902	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000298902	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000298902	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000298902	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557634	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557634	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557634	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557634	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000557634	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000555744	ENST00000322776		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000555744	ENST00000532303		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000555744	ENST00000529927		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000555744	ENST00000415352		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000555744	ENST00000526169		TCGA	RV	ACC	TCGA-OR-A5JE-01A	IFI27	chr14	94583027	+	NDUFV1	chr11	67375697	+
In-frame	ENST00000316097	ENST00000314133		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCAMP4	chr19	1918989	+	COX8A	chr11	63743697	+
3UTR-3CDS	ENST00000414057	ENST00000314133		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCAMP4	chr19	1918989	+	COX8A	chr11	63743697	+
intron-3CDS	ENST00000409472	ENST00000314133		TCGA	RV	ACC	TCGA-OR-A5JP-01A	SCAMP4	chr19	1918989	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000361175	ENST00000371996		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
In-frame	ENST00000361175	ENST00000371994		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000361175	ENST00000536010		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000361175	ENST00000472891		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000456849	ENST00000371996		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
In-frame	ENST00000456849	ENST00000371994		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000456849	ENST00000536010		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000456849	ENST00000472891		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000427144	ENST00000371996		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
In-frame	ENST00000427144	ENST00000371994		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000427144	ENST00000536010		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000427144	ENST00000472891		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000482258	ENST00000371996		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000482258	ENST00000371994		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000482258	ENST00000536010		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
intron-3UTR	ENST00000482258	ENST00000472891		TCGA	RV	ACC	TCGA-PK-A5HB-01A	PAPSS2	chr10	89487246	+	MINPP1	chr10	89311839	+
In-frame	ENST00000405201	ENST00000339570		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
In-frame	ENST00000405201	ENST00000415380		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000405201	ENST00000261693		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000405201	ENST00000376788		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000405201	ENST00000546215		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000405201	ENST00000535005		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000405201	ENST00000541205		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000405201	ENST00000540495		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000405201	ENST00000544327		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000404621	ENST00000339570		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000404621	ENST00000415380		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000404621	ENST00000261693		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000404621	ENST00000376788		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000404621	ENST00000546215		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404621	ENST00000535005		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404621	ENST00000541205		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404621	ENST00000540495		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404621	ENST00000544327		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000404121	ENST00000339570		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000404121	ENST00000415380		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000404121	ENST00000261693		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000404121	ENST00000376788		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000404121	ENST00000546215		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404121	ENST00000535005		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404121	ENST00000541205		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404121	ENST00000540495		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000404121	ENST00000544327		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000356219	ENST00000339570		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000356219	ENST00000415380		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000356219	ENST00000261693		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000356219	ENST00000376788		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000356219	ENST00000546215		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000356219	ENST00000535005		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000356219	ENST00000541205		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000356219	ENST00000540495		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000356219	ENST00000544327		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000397355	ENST00000339570		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000397355	ENST00000415380		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000397355	ENST00000261693		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000397355	ENST00000376788		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000397355	ENST00000546215		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000397355	ENST00000535005		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000397355	ENST00000541205		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000397355	ENST00000540495		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000397355	ENST00000544327		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000429285	ENST00000339570		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000429285	ENST00000415380		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000429285	ENST00000261693		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000429285	ENST00000376788		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-3UTR	ENST00000429285	ENST00000546215		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000429285	ENST00000535005		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000429285	ENST00000541205		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000429285	ENST00000540495		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
5CDS-intron	ENST00000429285	ENST00000544327		TCGA	RV	ACC	TCGA-OR-A5KY-01A	NCOR2	chr12	124882665	-	SCARB1	chr12	125263132	-
Frame-shit	ENST00000377967	ENST00000378045		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
5CDS-5UTR	ENST00000377967	ENST00000483115		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
Frame-shit	ENST00000382899	ENST00000378045		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
5CDS-5UTR	ENST00000382899	ENST00000483115		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
Frame-shit	ENST00000536777	ENST00000378045		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
5CDS-5UTR	ENST00000536777	ENST00000483115		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
Frame-shit	ENST00000543216	ENST00000378045		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
5CDS-5UTR	ENST00000543216	ENST00000483115		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
intron-3CDS	ENST00000479423	ENST00000378045		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
intron-5UTR	ENST00000479423	ENST00000483115		TCGA	RV	ACC	TCGA-OR-A5KV-01A	KDM6A	chrX	44833960	+	FUNDC1	chrX	44401347	-
Frame-shit	ENST00000265753	ENST00000244571		TCGA	RV	ACC	TCGA-OR-A5J8-01A	EIF4H	chr7	73588772	+	AARS2	chr6	44280000	-
5CDS-intron	ENST00000265753	ENST00000491573		TCGA	RV	ACC	TCGA-OR-A5J8-01A	EIF4H	chr7	73588772	+	AARS2	chr6	44280000	-
Frame-shit	ENST00000353999	ENST00000244571		TCGA	RV	ACC	TCGA-OR-A5J8-01A	EIF4H	chr7	73588772	+	AARS2	chr6	44280000	-
5CDS-intron	ENST00000353999	ENST00000491573		TCGA	RV	ACC	TCGA-OR-A5J8-01A	EIF4H	chr7	73588772	+	AARS2	chr6	44280000	-
intron-3CDS	ENST00000495187	ENST00000244571		TCGA	RV	ACC	TCGA-OR-A5J8-01A	EIF4H	chr7	73588772	+	AARS2	chr6	44280000	-
intron-intron	ENST00000495187	ENST00000491573		TCGA	RV	ACC	TCGA-OR-A5J8-01A	EIF4H	chr7	73588772	+	AARS2	chr6	44280000	-
intron-3CDS	ENST00000458477	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000458477	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000458477	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000228307	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000228307	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000228307	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000424649	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000424649	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000424649	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000397506	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000397506	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000397506	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000536957	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000536957	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000536957	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000267257	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000267257	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000267257	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000538144	ENST00000308366		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000538144	ENST00000423423		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000538144	ENST00000549767		TCGA	RV	ACC	TCGA-OR-A5LO-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000316403	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-intron	ENST00000316403	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000546343	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-intron	ENST00000546343	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000560366	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-intron	ENST00000560366	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000405140	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
intron-intron	ENST00000405140	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000523500	ENST00000369002		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000523500	ENST00000460009		TCGA	RV	ACC	TCGA-OR-A5JF-01A	CLU	chr8	27455514	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000252486	ENST00000513761		TCGA	RV	ACC	TCGA-OR-A5K9-01A	APOE	chr19	45412650	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000252486	ENST00000347613		TCGA	RV	ACC	TCGA-OR-A5K9-01A	APOE	chr19	45412650	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000252486	ENST00000360642		TCGA	RV	ACC	TCGA-OR-A5K9-01A	APOE	chr19	45412650	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000252486	ENST00000504131		TCGA	RV	ACC	TCGA-OR-A5K9-01A	APOE	chr19	45412650	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000252486	ENST00000506924		TCGA	RV	ACC	TCGA-OR-A5K9-01A	APOE	chr19	45412650	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000544301	ENST00000513761		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000544301	ENST00000347613		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000544301	ENST00000360642		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000544301	ENST00000504131		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000544301	ENST00000506924		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000224237	ENST00000513761		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000224237	ENST00000347613		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000224237	ENST00000360642		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000224237	ENST00000504131		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000224237	ENST00000506924		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485947	ENST00000513761		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485947	ENST00000347613		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485947	ENST00000360642		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485947	ENST00000504131		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485947	ENST00000506924		TCGA	RV	ACC	TCGA-PK-A5HB-01A	VIM	chr10	17279592	+	CLCN3	chr4	170623929	+
In-frame	ENST00000244571	ENST00000323108		TCGA	RV	ACC	TCGA-OR-A5J8-01A	AARS2	chr6	44278731	-	SPATS1	chr6	44328183	+
In-frame	ENST00000244571	ENST00000288390		TCGA	RV	ACC	TCGA-OR-A5J8-01A	AARS2	chr6	44278731	-	SPATS1	chr6	44328183	+
intron-3CDS	ENST00000491573	ENST00000323108		TCGA	RV	ACC	TCGA-OR-A5J8-01A	AARS2	chr6	44278731	-	SPATS1	chr6	44328183	+
intron-3CDS	ENST00000491573	ENST00000288390		TCGA	RV	ACC	TCGA-OR-A5J8-01A	AARS2	chr6	44278731	-	SPATS1	chr6	44328183	+
In-frame	ENST00000358506	ENST00000344773		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000358506	ENST00000379624		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000358506	ENST00000342045		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000358506	ENST00000379632		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000358506	ENST00000361704		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000358506	ENST00000603461		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000296122	ENST00000344773		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000296122	ENST00000379624		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000296122	ENST00000342045		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000296122	ENST00000379632		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000296122	ENST00000361704		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000296122	ENST00000603461		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000395366	ENST00000344773		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000395366	ENST00000379624		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000395366	ENST00000342045		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000395366	ENST00000379632		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
In-frame	ENST00000395366	ENST00000361704		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000395366	ENST00000603461		TCGA	RV	ACC	TCGA-OR-A5KY-01A	PPP1CB	chr2	28975042	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000496817	ENST00000484427		TCGA	RV	ACC	TCGA-OR-A5JB-01A	S100A6	chr1	153507075	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000496817	ENST00000371764		TCGA	RV	ACC	TCGA-OR-A5JB-01A	S100A6	chr1	153507075	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000368719	ENST00000484427		TCGA	RV	ACC	TCGA-OR-A5JB-01A	S100A6	chr1	153507075	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000368719	ENST00000371764		TCGA	RV	ACC	TCGA-OR-A5JB-01A	S100A6	chr1	153507075	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000368720	ENST00000484427		TCGA	RV	ACC	TCGA-OR-A5JB-01A	S100A6	chr1	153507075	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000368720	ENST00000371764		TCGA	RV	ACC	TCGA-OR-A5JB-01A	S100A6	chr1	153507075	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000263408	ENST00000380494		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000263408	ENST00000405807		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000263408	ENST00000261415		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-intron	ENST00000263408	ENST00000508692		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000509186	ENST00000380494		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000509186	ENST00000405807		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-3CDS	ENST00000509186	ENST00000261415		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
intron-intron	ENST00000509186	ENST00000508692		TCGA	LD	ACC	TCGA-OR-A5J1-01A	C9	chr5	39424906	-	COL4A3BP	chr5	74755006	-
Frame-shit	ENST00000373566	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000373566	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000373566	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000373563	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000373563	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000373563	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409480	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409480	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000409480	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409547	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409547	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000409547	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409196	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409196	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000409196	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409451	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000409451	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000409451	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000482666	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000482666	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
intron-3UTR	ENST00000482666	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000452341	ENST00000216027		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000452341	ENST00000398941		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000452341	ENST00000495977		TCGA	LD	ACC	TCGA-OR-A5J1-01A	GIGYF2	chr2	233659654	+	HSCB	chr22	29147229	+
5CDS-5UTR	ENST00000352456	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000352456	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-5UTR	ENST00000595018	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000595018	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-5UTR	ENST00000392006	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000392006	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-5UTR	ENST00000378215	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000378215	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-5UTR	ENST00000602130	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000602130	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-5UTR	ENST00000593587	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000593587	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-5UTR	ENST00000263367	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
5CDS-intron	ENST00000263367	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
3UTR-5UTR	ENST00000594207	ENST00000360535		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
3UTR-intron	ENST00000594207	ENST00000593074		TCGA	LD	ACC	TCGA-OR-A5J1-01A	HNRNPUL1	chr19	41774250	+	CLIP3	chr19	36523668	-
In-frame	ENST00000381226	ENST00000401507		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381226	ENST00000509663		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381226	ENST00000381103		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381226	ENST00000407818		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381226	ENST00000506857		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
In-frame	ENST00000381213	ENST00000401507		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381213	ENST00000509663		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381213	ENST00000381103		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381213	ENST00000407818		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381213	ENST00000506857		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
In-frame	ENST00000381199	ENST00000401507		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381199	ENST00000509663		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381199	ENST00000381103		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381199	ENST00000407818		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000381199	ENST00000506857		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
Frame-shit	ENST00000409421	ENST00000401507		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000409421	ENST00000509663		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000409421	ENST00000381103		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000409421	ENST00000407818		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5CDS-intron	ENST00000409421	ENST00000506857		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
intron-3CDS	ENST00000546593	ENST00000401507		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
intron-intron	ENST00000546593	ENST00000509663		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
intron-intron	ENST00000546593	ENST00000381103		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
intron-intron	ENST00000546593	ENST00000407818		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
intron-intron	ENST00000546593	ENST00000506857		TCGA	LD	ACC	TCGA-OR-A5J1-01A	MIER3	chr5	56231255	-	KIF2A	chr5	61681311	+
5UTR-3CDS	ENST00000315579	ENST00000310614		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000315579	ENST00000535529		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000315579	ENST00000411840		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000315579	ENST00000398483		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000315579	ENST00000542303		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-intron	ENST00000315579	ENST00000314282		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-3CDS	ENST00000545962	ENST00000310614		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000545962	ENST00000535529		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000545962	ENST00000411840		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000545962	ENST00000398483		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-5UTR	ENST00000545962	ENST00000542303		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
5UTR-intron	ENST00000545962	ENST00000314282		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-3CDS	ENST00000542492	ENST00000310614		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000542492	ENST00000535529		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000542492	ENST00000411840		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000542492	ENST00000398483		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000542492	ENST00000542303		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-intron	ENST00000542492	ENST00000314282		TCGA	LD	ACC	TCGA-OR-A5J1-01A	NCAPD2	chr12	6603320	+	MRPL48	chr11	73516072	+
intron-3CDS	ENST00000267205	ENST00000337014		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000267205	ENST00000577944		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000267205	ENST00000327949		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000537265	ENST00000337014		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000537265	ENST00000577944		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000537265	ENST00000327949		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000537171	ENST00000337014		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000537171	ENST00000577944		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
intron-3CDS	ENST00000537171	ENST00000327949		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
5UTR-3CDS	ENST00000545544	ENST00000337014		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
5UTR-3CDS	ENST00000545544	ENST00000577944		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
5UTR-3CDS	ENST00000545544	ENST00000327949		TCGA	LD	ACC	TCGA-OR-A5J1-01A	RHOF	chr12	122239613	-	HEXDC	chr17	80398873	+
Frame-shit	ENST00000380377	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000380377	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000380377	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
5CDS-intron	ENST00000380377	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000306388	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000306388	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000306388	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
5CDS-intron	ENST00000306388	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000520361	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000520361	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000520361	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
5CDS-intron	ENST00000520361	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000518338	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000518338	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000518338	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
5CDS-intron	ENST00000518338	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
In-frame	ENST00000522370	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
In-frame	ENST00000522370	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
In-frame	ENST00000522370	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
5CDS-intron	ENST00000522370	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-3CDS	ENST00000520039	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-3CDS	ENST00000520039	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-3CDS	ENST00000520039	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-intron	ENST00000520039	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000517679	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000517679	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
Frame-shit	ENST00000517679	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
5CDS-intron	ENST00000517679	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-3CDS	ENST00000517881	ENST00000264914		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-3CDS	ENST00000517881	ENST00000396151		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-3CDS	ENST00000517881	ENST00000565165		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
intron-intron	ENST00000517881	ENST00000521800		TCGA	LD	ACC	TCGA-OR-A5J1-01A	TBCA	chr5	77004067	-	ARSB	chr5	78135249	-
In-frame	ENST00000435504	ENST00000261308		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
In-frame	ENST00000435504	ENST00000535264		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
In-frame	ENST00000435504	ENST00000538977		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
Frame-shit	ENST00000336112	ENST00000261308		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
Frame-shit	ENST00000336112	ENST00000535264		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
Frame-shit	ENST00000336112	ENST00000538977		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000272341	ENST00000261308		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000272341	ENST00000535264		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000272341	ENST00000538977		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000404843	ENST00000261308		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000404843	ENST00000535264		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000404843	ENST00000538977		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000497092	ENST00000261308		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000497092	ENST00000535264		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000497092	ENST00000538977		TCGA	LD	ACC	TCGA-OR-A5J2-01A	ASXL2	chr2	26029098	-	PPWD1	chr5	64872706	+
5CDS-5UTR	ENST00000325885	ENST00000447467		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000324972		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000537881		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000437599		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000359388		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000413338		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000457059		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-intron	ENST00000325885	ENST00000497626		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000447467		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000324972		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000537881		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000437599		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000359388		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000413338		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000457059		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-intron	ENST00000257621	ENST00000497626		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000447467		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000324972		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000537881		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000437599		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000359388		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000413338		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000457059		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-intron	ENST00000428113	ENST00000497626		TCGA	LD	ACC	TCGA-OR-A5J3-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
Frame-shit	ENST00000306729	ENST00000329138		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ASPSCR1	chr17	79943483	+	HGS	chr17	79667497	+
Frame-shit	ENST00000306739	ENST00000329138		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ASPSCR1	chr17	79943483	+	HGS	chr17	79667497	+
Frame-shit	ENST00000580534	ENST00000329138		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ASPSCR1	chr17	79943483	+	HGS	chr17	79667497	+
Frame-shit	ENST00000581647	ENST00000329138		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ASPSCR1	chr17	79943483	+	HGS	chr17	79667497	+
intron-3CDS	ENST00000582404	ENST00000329138		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ASPSCR1	chr17	79943483	+	HGS	chr17	79667497	+
5UTR-5UTR	ENST00000303052	ENST00000548567		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000303052	ENST00000351328		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000303052	ENST00000542324		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000607537	ENST00000548567		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000607537	ENST00000351328		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000607537	ENST00000542324		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000303032	ENST00000548567		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000303032	ENST00000351328		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-5UTR	ENST00000303032	ENST00000542324		TCGA	LD	ACC	TCGA-OR-A5J7-01A	CSNK1G1	chr15	64648187	-	CS	chr12	56680429	-
5UTR-3CDS	ENST00000394071	ENST00000553458		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000394071	ENST00000350259		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
5UTR-intron	ENST00000394071	ENST00000555126		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
5UTR-5UTR	ENST00000394071	ENST00000556852		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000286523	ENST00000553458		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000286523	ENST00000350259		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000286523	ENST00000555126		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000286523	ENST00000556852		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000486739	ENST00000553458		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000486739	ENST00000350259		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000486739	ENST00000555126		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000486739	ENST00000556852		TCGA	LD	ACC	TCGA-OR-A5J7-01A	ELMSAN1	chr14	74253805	-	ALDH6A1	chr14	74541720	-
Frame-shit	ENST00000238667	ENST00000286639		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
5CDS-3UTR	ENST00000238667	ENST00000555795		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
5CDS-intron	ENST00000238667	ENST00000555504		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000539311	ENST00000286639		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000539311	ENST00000555795		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-intron	ENST00000539311	ENST00000555504		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000556241	ENST00000286639		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000556241	ENST00000555795		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-intron	ENST00000556241	ENST00000555504		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000553587	ENST00000286639		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000553587	ENST00000555795		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-intron	ENST00000553587	ENST00000555504		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000556856	ENST00000286639		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000556856	ENST00000555795		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-intron	ENST00000556856	ENST00000555504		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000555027	ENST00000286639		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000555027	ENST00000555795		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
intron-intron	ENST00000555027	ENST00000555504		TCGA	LD	ACC	TCGA-OR-A5J7-01A	FLVCR2	chr14	76045984	+	BATF	chr14	76012805	+
5CDS-5UTR	ENST00000159111	ENST00000262962		TCGA	LD	ACC	TCGA-OR-A5J7-01A	KDM4B	chr19	5047680	+	CCDC94	chr19	4247116	+
5CDS-5UTR	ENST00000381759	ENST00000262962		TCGA	LD	ACC	TCGA-OR-A5J7-01A	KDM4B	chr19	5047680	+	CCDC94	chr19	4247116	+
5CDS-5UTR	ENST00000536461	ENST00000262962		TCGA	LD	ACC	TCGA-OR-A5J7-01A	KDM4B	chr19	5047680	+	CCDC94	chr19	4247116	+
3UTR-5UTR	ENST00000592175	ENST00000262962		TCGA	LD	ACC	TCGA-OR-A5J7-01A	KDM4B	chr19	5047680	+	CCDC94	chr19	4247116	+
5CDS-intron	ENST00000334527	ENST00000371741		TCGA	LD	ACC	TCGA-OR-A5J7-01A	NDEL1	chr17	8358205	+	KCNB1	chr20	47927336	-
5CDS-intron	ENST00000299734	ENST00000371741		TCGA	LD	ACC	TCGA-OR-A5J7-01A	NDEL1	chr17	8358205	+	KCNB1	chr20	47927336	-
intron-intron	ENST00000585098	ENST00000371741		TCGA	LD	ACC	TCGA-OR-A5J7-01A	NDEL1	chr17	8358205	+	KCNB1	chr20	47927336	-
5CDS-intron	ENST00000380025	ENST00000371741		TCGA	LD	ACC	TCGA-OR-A5J7-01A	NDEL1	chr17	8358205	+	KCNB1	chr20	47927336	-
5CDS-intron	ENST00000402554	ENST00000371741		TCGA	LD	ACC	TCGA-OR-A5J7-01A	NDEL1	chr17	8358205	+	KCNB1	chr20	47927336	-
intron-intron	ENST00000583066	ENST00000371741		TCGA	LD	ACC	TCGA-OR-A5J7-01A	NDEL1	chr17	8358205	+	KCNB1	chr20	47927336	-
intron-3UTR	ENST00000398081	ENST00000340648		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PDXK	chr21	45178423	+	RRP1B	chr21	45114774	+
3UTR-3UTR	ENST00000468090	ENST00000340648		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PDXK	chr21	45178423	+	RRP1B	chr21	45114774	+
3UTR-3UTR	ENST00000291565	ENST00000340648		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PDXK	chr21	45178423	+	RRP1B	chr21	45114774	+
intron-3UTR	ENST00000327574	ENST00000340648		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PDXK	chr21	45178423	+	RRP1B	chr21	45114774	+
intron-3UTR	ENST00000476313	ENST00000340648		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PDXK	chr21	45178423	+	RRP1B	chr21	45114774	+
3UTR-3UTR	ENST00000467908	ENST00000340648		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PDXK	chr21	45178423	+	RRP1B	chr21	45114774	+
Frame-shit	ENST00000261313	ENST00000361217		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PEBP1	chr12	118577356	+	DENND4B	chr1	153908664	-
5CDS-intron	ENST00000261313	ENST00000474386		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PEBP1	chr12	118577356	+	DENND4B	chr1	153908664	-
3UTR-3CDS	ENST00000542939	ENST00000361217		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PEBP1	chr12	118577356	+	DENND4B	chr1	153908664	-
3UTR-intron	ENST00000542939	ENST00000474386		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PEBP1	chr12	118577356	+	DENND4B	chr1	153908664	-
In-frame	ENST00000354764	ENST00000388968		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
In-frame	ENST00000354764	ENST00000345042		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
Frame-shit	ENST00000354764	ENST00000544407		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
In-frame	ENST00000409475	ENST00000388968		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
In-frame	ENST00000409475	ENST00000345042		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
Frame-shit	ENST00000409475	ENST00000544407		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000409188	ENST00000388968		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000409188	ENST00000345042		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000409188	ENST00000544407		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000485830	ENST00000388968		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000485830	ENST00000345042		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000485830	ENST00000544407		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PGAP1	chr2	197750148	-	HSPD1	chr2	198362116	-
intron-3CDS	ENST00000408388	ENST00000295408		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PVT1	chr8	128806980	+	MERTK	chr2	112722768	+
intron-3CDS	ENST00000408388	ENST00000421804		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PVT1	chr8	128806980	+	MERTK	chr2	112722768	+
intron-3CDS	ENST00000408388	ENST00000409780		TCGA	LD	ACC	TCGA-OR-A5J7-01A	PVT1	chr8	128806980	+	MERTK	chr2	112722768	+
intron-3CDS	ENST00000361757	ENST00000221399		TCGA	LD	ACC	TCGA-OR-A5J7-01A	SBNO2	chr19	1168693	-	TULP2	chr19	49392888	-
intron-3CDS	ENST00000587024	ENST00000221399		TCGA	LD	ACC	TCGA-OR-A5J7-01A	SBNO2	chr19	1168693	-	TULP2	chr19	49392888	-
intron-3CDS	ENST00000438103	ENST00000221399		TCGA	LD	ACC	TCGA-OR-A5J7-01A	SBNO2	chr19	1168693	-	TULP2	chr19	49392888	-
5CDS-intron	ENST00000283206	ENST00000408388		TCGA	LD	ACC	TCGA-OR-A5J7-01A	TMEM87B	chr2	112838695	+	PVT1	chr8	128902835	+
intron-intron	ENST00000463427	ENST00000408388		TCGA	LD	ACC	TCGA-OR-A5J7-01A	TMEM87B	chr2	112838695	+	PVT1	chr8	128902835	+
5UTR-3CDS	ENST00000367922	ENST00000367942		TCGA	LD	ACC	TCGA-OR-A5J8-01A	DDR2	chr1	162625164	+	ATF6	chr1	161928236	+
5UTR-intron	ENST00000367922	ENST00000476437		TCGA	LD	ACC	TCGA-OR-A5J8-01A	DDR2	chr1	162625164	+	ATF6	chr1	161928236	+
5UTR-3CDS	ENST00000367921	ENST00000367942		TCGA	LD	ACC	TCGA-OR-A5J8-01A	DDR2	chr1	162625164	+	ATF6	chr1	161928236	+
5UTR-intron	ENST00000367921	ENST00000476437		TCGA	LD	ACC	TCGA-OR-A5J8-01A	DDR2	chr1	162625164	+	ATF6	chr1	161928236	+
5CDS-5UTR	ENST00000275015	ENST00000370939		TCGA	LD	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44230297	-	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000275015	ENST00000323557		TCGA	LD	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44230297	-	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000275015	ENST00000244426		TCGA	LD	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44230297	-	FBXO9	chr6	52935855	+
5CDS-intron	ENST00000275015	ENST00000461222		TCGA	LD	ACC	TCGA-OR-A5J8-01A	NFKBIE	chr6	44230297	-	FBXO9	chr6	52935855	+
5CDS-intron	ENST00000426256	ENST00000475548		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000426256	ENST00000358743		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000426256	ENST00000347557		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000426256	ENST00000333137		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000426256	ENST00000404574		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000326132	ENST00000475548		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000326132	ENST00000358743		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000326132	ENST00000347557		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000326132	ENST00000333137		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000326132	ENST00000404574		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000266252	ENST00000475548		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000266252	ENST00000358743		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000266252	ENST00000347557		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000266252	ENST00000333137		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
5CDS-intron	ENST00000266252	ENST00000404574		TCGA	LD	ACC	TCGA-OR-A5J8-01A	RNF185	chr22	31588688	+	SMTN	chr22	31491289	+
Frame-shit	ENST00000487861	ENST00000358716		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000487861	ENST00000382422		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000487861	ENST00000360310		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
5CDS-intron	ENST00000487861	ENST00000553853		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000471583	ENST00000358716		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000471583	ENST00000382422		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000471583	ENST00000360310		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
5CDS-intron	ENST00000471583	ENST00000553853		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000487270	ENST00000358716		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000487270	ENST00000382422		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000487270	ENST00000360310		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
5CDS-intron	ENST00000487270	ENST00000553853		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000488612	ENST00000358716		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000488612	ENST00000382422		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000488612	ENST00000360310		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
5CDS-intron	ENST00000488612	ENST00000553853		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000390683	ENST00000358716		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000390683	ENST00000382422		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
Frame-shit	ENST00000390683	ENST00000360310		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
5CDS-intron	ENST00000390683	ENST00000553853		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
3UTR-3CDS	ENST00000469165	ENST00000358716		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
3UTR-3CDS	ENST00000469165	ENST00000382422		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
3UTR-3CDS	ENST00000469165	ENST00000360310		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
3UTR-intron	ENST00000469165	ENST00000553853		TCGA	LD	ACC	TCGA-OR-A5J9-01A	RAD51B	chr14	68353921	+	BAZ1A	chr14	35228052	-
3UTR-3CDS	ENST00000423278	ENST00000354760		TCGA	LD	ACC	TCGA-OR-A5JA-01A	MIAT	chr22	27053618	+	CRYBA4	chr22	27026304	+
3UTR-3UTR	ENST00000423278	ENST00000466315		TCGA	LD	ACC	TCGA-OR-A5JA-01A	MIAT	chr22	27053618	+	CRYBA4	chr22	27026304	+
Frame-shit	ENST00000407327	ENST00000558518		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000407327	ENST00000557933		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000407327	ENST00000455727		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000407327	ENST00000535915		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000407327	ENST00000545707		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000407327	ENST00000558013		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
5CDS-intron	ENST00000407327	ENST00000560628		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000335757	ENST00000558518		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000335757	ENST00000557933		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000335757	ENST00000455727		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000335757	ENST00000535915		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000335757	ENST00000545707		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000335757	ENST00000558013		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
5CDS-intron	ENST00000335757	ENST00000560628		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000586078	ENST00000558518		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000586078	ENST00000557933		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000586078	ENST00000455727		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000586078	ENST00000535915		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
In-frame	ENST00000586078	ENST00000545707		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
Frame-shit	ENST00000586078	ENST00000558013		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
5CDS-intron	ENST00000586078	ENST00000560628		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-3CDS	ENST00000588214	ENST00000558518		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-3CDS	ENST00000588214	ENST00000557933		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-3CDS	ENST00000588214	ENST00000455727		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-3CDS	ENST00000588214	ENST00000535915		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-3CDS	ENST00000588214	ENST00000545707		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-3CDS	ENST00000588214	ENST00000558013		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
intron-intron	ENST00000588214	ENST00000560628		TCGA	LD	ACC	TCGA-OR-A5JA-01A	SLC44A2	chr19	10746191	+	LDLR	chr19	11241957	+
5CDS-5UTR	ENST00000358901	ENST00000378566		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000603301		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000488109		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000322813		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000605244		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000378561		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000378557		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000378554		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000358901	ENST00000605392		TCGA	LD	ACC	TCGA-OR-A5JA-01A	VCP	chr9	35072334	-	FAM214B	chr9	35108734	-
5UTR-intron	ENST00000262915	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000262915	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000262915	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372375	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372375	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372375	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000351035	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000351035	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000351035	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372374	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372374	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372374	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000353126	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000353126	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000353126	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000545417	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000545417	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000545417	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000330208	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000330208	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000330208	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000335430	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000335430	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000335430	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372377	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372377	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000372377	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000361392	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000361392	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000361392	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000361400	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000361400	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000361400	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000347631	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000347631	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000347631	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000361812	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000361812	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000361812	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372362	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372362	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372362	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531451	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531451	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531451	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372366	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372366	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372366	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372365	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372365	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372365	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372368	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372368	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372368	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000332628	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000332628	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000332628	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372372	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372372	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372372	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531816	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531816	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531816	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000528371	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000528371	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000528371	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372369	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372369	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372369	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531993	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531993	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000531993	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000361746	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000361746	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000361746	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000533933	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000533933	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000533933	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372367	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372367	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000372367	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000461375	ENST00000431635		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000461375	ENST00000236051		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
intron-intron	ENST00000461375	ENST00000472982		TCGA	LD	ACC	TCGA-OR-A5JB-01A	ST3GAL3	chr1	44173364	+	EBNA1BP2	chr1	43727589	-
5CDS-5UTR	ENST00000337537	ENST00000554913		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000337537	ENST00000352127		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000337537	ENST00000553264		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000337537	ENST00000555055		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000337537	ENST00000445556		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-intron	ENST00000337537	ENST00000554974		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-intron	ENST00000337537	ENST00000555832		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000555899	ENST00000554913		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000555899	ENST00000352127		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000555899	ENST00000553264		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000555899	ENST00000555055		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000555899	ENST00000445556		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-intron	ENST00000555899	ENST00000554974		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-intron	ENST00000555899	ENST00000555832		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000422769	ENST00000554913		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000422769	ENST00000352127		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000422769	ENST00000553264		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000422769	ENST00000555055		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-5UTR	ENST00000422769	ENST00000445556		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-intron	ENST00000422769	ENST00000554974		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5CDS-intron	ENST00000422769	ENST00000555832		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-5UTR	ENST00000553266	ENST00000554913		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-5UTR	ENST00000553266	ENST00000352127		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-5UTR	ENST00000553266	ENST00000553264		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-5UTR	ENST00000553266	ENST00000555055		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-5UTR	ENST00000553266	ENST00000445556		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-intron	ENST00000553266	ENST00000554974		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
5UTR-intron	ENST00000553266	ENST00000555832		TCGA	LD	ACC	TCGA-OR-A5JC-01A	PPP2R5E	chr14	63881858	-	XRCC3	chr14	104177904	-
3UTR-3CDS	ENST00000534336	ENST00000344774		TCGA	LD	ACC	TCGA-OR-A5JD-01A	MALAT1	chr11	65269547	+	FAM166A	chr9	140139674	-
3UTR-3CDS	ENST00000534336	ENST00000388932		TCGA	LD	ACC	TCGA-OR-A5JD-01A	MALAT1	chr11	65269547	+	FAM166A	chr9	140139674	-
Frame-shit	ENST00000422424	ENST00000313077		TCGA	LD	ACC	TCGA-OR-A5JF-01A	FAM96B	chr16	66967517	-	CYFIP1	chr15	22940728	-
Frame-shit	ENST00000422424	ENST00000560848		TCGA	LD	ACC	TCGA-OR-A5JF-01A	FAM96B	chr16	66967517	-	CYFIP1	chr15	22940728	-
5CDS-intron	ENST00000422424	ENST00000435939		TCGA	LD	ACC	TCGA-OR-A5JF-01A	FAM96B	chr16	66967517	-	CYFIP1	chr15	22940728	-
intron-3CDS	ENST00000516892	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JK-01A	MEG3	chr14	101311870	+	DLK1	chr14	101194733	+
intron-3CDS	ENST00000516892	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JK-01A	MEG3	chr14	101311870	+	DLK1	chr14	101194733	+
intron-3CDS	ENST00000516892	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JK-01A	MEG3	chr14	101311870	+	DLK1	chr14	101194733	+
5CDS-intron	ENST00000327087	ENST00000252318		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5CDS-3UTR	ENST00000327087	ENST00000541339		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5CDS-intron	ENST00000546188	ENST00000252318		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5CDS-3UTR	ENST00000546188	ENST00000541339		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5CDS-intron	ENST00000356134	ENST00000252318		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5CDS-3UTR	ENST00000356134	ENST00000541339		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5UTR-intron	ENST00000538154	ENST00000252318		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
5UTR-3UTR	ENST00000538154	ENST00000541339		TCGA	LD	ACC	TCGA-OR-A5JL-01A	ANO2	chr12	5841683	-	GALNT8	chr12	4959906	+
Frame-shit	ENST00000455537	ENST00000257600		TCGA	LD	ACC	TCGA-OR-A5JM-01A	KIF5A	chr12	57961401	+	DTX1	chr12	113515229	+
5CDS-intron	ENST00000455537	ENST00000547974		TCGA	LD	ACC	TCGA-OR-A5JM-01A	KIF5A	chr12	57961401	+	DTX1	chr12	113515229	+
Frame-shit	ENST00000286452	ENST00000257600		TCGA	LD	ACC	TCGA-OR-A5JM-01A	KIF5A	chr12	57961401	+	DTX1	chr12	113515229	+
5CDS-intron	ENST00000286452	ENST00000547974		TCGA	LD	ACC	TCGA-OR-A5JM-01A	KIF5A	chr12	57961401	+	DTX1	chr12	113515229	+
5CDS-intron	ENST00000552864	ENST00000413953		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
5CDS-5UTR	ENST00000552864	ENST00000347140		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
5CDS-5UTR	ENST00000552864	ENST00000358907		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
5CDS-5UTR	ENST00000552864	ENST00000402412		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
5CDS-intron	ENST00000552864	ENST00000441731		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
5CDS-5UTR	ENST00000552864	ENST00000403821		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
5CDS-intron	ENST00000552864	ENST00000546843		TCGA	LD	ACC	TCGA-OR-A5JM-01A	LIN7A	chr12	81205244	-	R3HDM2	chr12	57704246	-
intron-3CDS	ENST00000448841	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JM-01A	WBP1L	chr10	104576024	+	DLK1	chr14	101194758	+
intron-3CDS	ENST00000448841	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JM-01A	WBP1L	chr10	104576024	+	DLK1	chr14	101194758	+
intron-3CDS	ENST00000448841	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JM-01A	WBP1L	chr10	104576024	+	DLK1	chr14	101194758	+
Frame-shit	ENST00000369889	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JM-01A	WBP1L	chr10	104576024	+	DLK1	chr14	101194758	+
Frame-shit	ENST00000369889	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JM-01A	WBP1L	chr10	104576024	+	DLK1	chr14	101194758	+
Frame-shit	ENST00000369889	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JM-01A	WBP1L	chr10	104576024	+	DLK1	chr14	101194758	+
Frame-shit	ENST00000558518	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000558518	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000557933	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000557933	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000455727	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000455727	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000535915	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000535915	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000545707	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000545707	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000558013	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
Frame-shit	ENST00000558013	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
intron-3CDS	ENST00000560628	ENST00000403903		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
intron-3CDS	ENST00000560628	ENST00000403352		TCGA	LD	ACC	TCGA-OR-A5JP-01A	LDLR	chr19	11200291	+	ZGLP1	chr19	10419067	-
intron-3CDS	ENST00000423103	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000423103	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000326441	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000326441	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000598410	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000598410	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000593695	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000593695	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000594706	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000594706	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	PEG3	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000253048	ENST00000404338		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZC3H4	chr19	47614152	-	ARHGAP35	chr19	47491246	+
intron-intron	ENST00000253048	ENST00000598548		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZC3H4	chr19	47614152	-	ARHGAP35	chr19	47491246	+
intron-3CDS	ENST00000594019	ENST00000404338		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZC3H4	chr19	47614152	-	ARHGAP35	chr19	47491246	+
intron-intron	ENST00000594019	ENST00000598548		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZC3H4	chr19	47614152	-	ARHGAP35	chr19	47491246	+
intron-3CDS	ENST00000593711	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000593711	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000221722	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000221722	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000391708	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000391708	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000601070	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000601070	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000599935	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000599935	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000593931	ENST00000280557		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
intron-3CDS	ENST00000593931	ENST00000455982		TCGA	LD	ACC	TCGA-OR-A5JP-01A	ZIM2	chr19	57347438	-	DENR	chr12	123252135	+
In-frame	ENST00000582809	ENST00000535342		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000582809	ENST00000392769		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000582809	ENST00000541355		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000582809	ENST00000537949		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000582809	ENST00000317442		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000582809	ENST00000580482		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
intron-3CDS	ENST00000577616	ENST00000535342		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
intron-3CDS	ENST00000577616	ENST00000392769		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
intron-3CDS	ENST00000577616	ENST00000541355		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
intron-3CDS	ENST00000577616	ENST00000537949		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
intron-3CDS	ENST00000577616	ENST00000317442		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
intron-5UTR	ENST00000577616	ENST00000580482		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000326270	ENST00000535342		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000326270	ENST00000392769		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000326270	ENST00000541355		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000326270	ENST00000537949		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000326270	ENST00000317442		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000326270	ENST00000580482		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000346027	ENST00000535342		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000346027	ENST00000392769		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000346027	ENST00000541355		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000346027	ENST00000537949		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000346027	ENST00000317442		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000346027	ENST00000580482		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000343388	ENST00000535342		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000343388	ENST00000392769		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000343388	ENST00000541355		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000343388	ENST00000537949		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000343388	ENST00000317442		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000343388	ENST00000580482		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000542523	ENST00000535342		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000542523	ENST00000392769		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000542523	ENST00000541355		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000542523	ENST00000537949		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000542523	ENST00000317442		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000542523	ENST00000580482		TCGA	LD	ACC	TCGA-OR-A5JS-01A	TLK2	chr17	60685509	+	CEP112	chr17	63685336	-
In-frame	ENST00000435363	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
In-frame	ENST00000435363	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
5CDS-intron	ENST00000435363	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000425700	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000425700	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000425700	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000485543	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000485543	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000485543	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000411583	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000411583	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000411583	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000548530	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000548530	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000548530	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000550398	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000550398	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000550398	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000487226	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000487226	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000487226	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000449788	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000449788	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000449788	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000546399	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000546399	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000546399	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000494210	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000494210	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000494210	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000445788	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000445788	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000445788	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000375177	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000375177	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000375177	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000548301	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000548301	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000548301	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000488817	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-3CDS	ENST00000488817	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
intron-intron	ENST00000488817	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	C4B	chr6	31999910	+	DLK1	chr14	101200985	+
Frame-shit	ENST00000318911	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	CYC1	chr8	145150913	+	DLK1	chr14	101200802	+
5CDS-intron	ENST00000318911	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	CYC1	chr8	145150913	+	DLK1	chr14	101200802	+
5CDS-intron	ENST00000318911	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	CYC1	chr8	145150913	+	DLK1	chr14	101200802	+
5CDS-3UTR	ENST00000370313	ENST00000381395		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370313	ENST00000381406		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370313	ENST00000416167		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370313	ENST00000300632		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370313	ENST00000434045		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370313	ENST00000381392		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370313	ENST00000381389		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370313	ENST00000418738		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370316	ENST00000381395		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370316	ENST00000381406		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370316	ENST00000416167		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-3UTR	ENST00000370316	ENST00000300632		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370316	ENST00000434045		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370316	ENST00000381392		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370316	ENST00000381389		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
5CDS-intron	ENST00000370316	ENST00000418738		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000466885	ENST00000381395		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000466885	ENST00000381406		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000466885	ENST00000416167		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000466885	ENST00000300632		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000466885	ENST00000434045		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000466885	ENST00000381392		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000466885	ENST00000381389		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000466885	ENST00000418738		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000370307	ENST00000381395		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000370307	ENST00000381406		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000370307	ENST00000416167		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3UTR	ENST00000370307	ENST00000300632		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000370307	ENST00000434045		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000370307	ENST00000381392		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000370307	ENST00000381389		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-intron	ENST00000370307	ENST00000418738		TCGA	LD	ACC	TCGA-OR-A5JT-01A	NKAIN4	chr20	61872136	-	IGF2	chr11	2153384	-
intron-3CDS	ENST00000369817	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000369817	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000369817	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000479366	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000479366	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000479366	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000424325	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000424325	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000424325	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000406022	ENST00000341267		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000406022	ENST00000331224		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
intron-3CDS	ENST00000406022	ENST00000556051		TCGA	LD	ACC	TCGA-OR-A5JT-01A	RPL10	chrX	153628542	+	DLK1	chr14	101195287	+
Frame-shit	ENST00000375200	ENST00000375222		TCGA	LD	ACC	TCGA-OR-A5JT-01A	ZNF341	chr20	32333105	+	C20orf144	chr20	32251338	+
Frame-shit	ENST00000342427	ENST00000375222		TCGA	LD	ACC	TCGA-OR-A5JT-01A	ZNF341	chr20	32333105	+	C20orf144	chr20	32251338	+
intron-intron	ENST00000369162	ENST00000400521		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369162	ENST00000400519		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369162	ENST00000535882		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369162	ENST00000334363		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369162	ENST00000400518		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369162	ENST00000542719		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369162	ENST00000491939		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000400521		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000400519		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000535882		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000334363		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000400518		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000542719		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000522650	ENST00000491939		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000400521		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000400519		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000535882		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000334363		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000400518		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000542719		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
intron-intron	ENST00000369143	ENST00000491939		TCGA	LD	ACC	TCGA-OR-A5JY-01A	ASCC3	chr6	101052507	-	TXNRD2	chr22	19929420	-
5CDS-5UTR	ENST00000335625	ENST00000259526		TCGA	LD	ACC	TCGA-OR-A5JY-01A	GABRA5	chr15	27114481	+	NOV	chr8	120428626	+
5CDS-5UTR	ENST00000355395	ENST00000259526		TCGA	LD	ACC	TCGA-OR-A5JY-01A	GABRA5	chr15	27114481	+	NOV	chr8	120428626	+
5CDS-5UTR	ENST00000400081	ENST00000259526		TCGA	LD	ACC	TCGA-OR-A5JY-01A	GABRA5	chr15	27114481	+	NOV	chr8	120428626	+
3UTR-5UTR	ENST00000557449	ENST00000259526		TCGA	LD	ACC	TCGA-OR-A5JY-01A	GABRA5	chr15	27114481	+	NOV	chr8	120428626	+
5CDS-3UTR	ENST00000359878	ENST00000472193		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5CDS-intron	ENST00000359878	ENST00000428675		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5CDS-intron	ENST00000359878	ENST00000437704		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5CDS-3UTR	ENST00000409157	ENST00000472193		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5CDS-intron	ENST00000409157	ENST00000428675		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5CDS-intron	ENST00000409157	ENST00000437704		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5UTR-3UTR	ENST00000468413	ENST00000472193		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5UTR-intron	ENST00000468413	ENST00000428675		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
5UTR-intron	ENST00000468413	ENST00000437704		TCGA	LD	ACC	TCGA-OR-A5JY-01A	KCTD18	chr2	201362476	-	PLCL1	chr2	199220019	+
Frame-shit	ENST00000296252	ENST00000231887		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
Frame-shit	ENST00000296252	ENST00000456310		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
5CDS-intron	ENST00000296252	ENST00000475987		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
5CDS-intron	ENST00000296252	ENST00000440662		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
Frame-shit	ENST00000424591	ENST00000231887		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
Frame-shit	ENST00000424591	ENST00000456310		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
5CDS-intron	ENST00000424591	ENST00000475987		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
5CDS-intron	ENST00000424591	ENST00000440662		TCGA	LD	ACC	TCGA-OR-A5JY-01A	LIPH	chr3	185270211	-	EHHADH	chr3	184911275	-
Frame-shit	ENST00000590550	ENST00000264560		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000590550	ENST00000338448		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5CDS-intron	ENST00000590550	ENST00000593172		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000434436	ENST00000264560		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000434436	ENST00000338448		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5CDS-intron	ENST00000434436	ENST00000593172		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000592012	ENST00000264560		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000592012	ENST00000338448		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5CDS-intron	ENST00000592012	ENST00000593172		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000156825	ENST00000264560		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
Frame-shit	ENST00000156825	ENST00000338448		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5CDS-intron	ENST00000156825	ENST00000593172		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5UTR-3CDS	ENST00000585967	ENST00000264560		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5UTR-3CDS	ENST00000585967	ENST00000338448		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
5UTR-intron	ENST00000585967	ENST00000593172		TCGA	LD	ACC	TCGA-OR-A5JY-01A	MBD3	chr19	1582621	-	PALM	chr19	726138	+
intron-3CDS	ENST00000430069	ENST00000446450		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000430069	ENST00000354956		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000430069	ENST00000354449		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-intron	ENST00000430069	ENST00000469654		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000457928	ENST00000446450		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000457928	ENST00000354956		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-3CDS	ENST00000457928	ENST00000354449		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
intron-intron	ENST00000457928	ENST00000469654		TCGA	LD	ACC	TCGA-OR-A5JY-01A	TBL1XR1	chr3	176878659	-	ATG7	chr3	11596285	+
In-frame	ENST00000281187	ENST00000566621		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
In-frame	ENST00000281187	ENST00000437989		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
In-frame	ENST00000281187	ENST00000569302		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000281187	ENST00000567389		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000281187	ENST00000562877		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000281187	ENST00000338183		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000281187	ENST00000565792		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000281187	ENST00000562489		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000281187	ENST00000563167		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
In-frame	ENST00000525095	ENST00000566621		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
In-frame	ENST00000525095	ENST00000437989		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
In-frame	ENST00000525095	ENST00000569302		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000525095	ENST00000567389		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000525095	ENST00000562877		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000525095	ENST00000338183		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000525095	ENST00000565792		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000525095	ENST00000562489		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000525095	ENST00000563167		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-3CDS	ENST00000530402	ENST00000566621		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-3CDS	ENST00000530402	ENST00000437989		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-3CDS	ENST00000530402	ENST00000569302		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-5UTR	ENST00000530402	ENST00000567389		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-5UTR	ENST00000530402	ENST00000562877		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-5UTR	ENST00000530402	ENST00000338183		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-intron	ENST00000530402	ENST00000565792		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-intron	ENST00000530402	ENST00000562489		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
3UTR-intron	ENST00000530402	ENST00000563167		TCGA	LD	ACC	TCGA-OR-A5JY-01A	VPS26B	chr11	134110049	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000566780	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000566780	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000566780	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000566780	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000406884	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000406884	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000406884	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000406884	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000539474	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000539474	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000539474	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000539474	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000402655	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000402655	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000402655	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000402655	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000408984	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000408984	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000408984	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000408984	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000355860	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000355860	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000355860	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5CDS-intron	ENST00000355860	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
3UTR-intron	ENST00000565791	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
3UTR-intron	ENST00000565791	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
3UTR-intron	ENST00000565791	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
3UTR-intron	ENST00000565791	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000569818	ENST00000264012		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000569818	ENST00000429102		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000569818	ENST00000581171		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
intron-intron	ENST00000569818	ENST00000569117		TCGA	LD	ACC	TCGA-OR-A5JY-01A	WWOX	chr16	78198186	+	CDH3	chr16	68756328	+
5UTR-intron	ENST00000298119	ENST00000516624		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517111		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516429		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517180		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516953		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516327		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517204		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516019		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516528		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516190		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000515993		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517219		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517043		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516771		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517232		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516773		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516482		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516241		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516728		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517079		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517242		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000362607		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000517250		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-3UTR	ENST00000298119	ENST00000516049		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516540		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000298119	ENST00000516287		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516624		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517111		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516429		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517180		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516953		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516327		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517204		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516019		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516528		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516190		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000515993		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517219		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517043		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516771		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517232		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516773		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516482		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516241		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516728		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517079		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517242		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000362607		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000517250		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-3UTR	ENST00000555279	ENST00000516049		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516540		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
3UTR-intron	ENST00000555279	ENST00000516287		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516624		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517111		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516429		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517180		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516953		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516327		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517204		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516019		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516528		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516190		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000515993		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517219		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517043		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516771		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517232		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516773		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516482		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516241		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516728		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517079		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517242		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000362607		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000517250		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-3UTR	ENST00000554120	ENST00000516049		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516540		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
5UTR-intron	ENST00000554120	ENST00000516287		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516624		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517111		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516429		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517180		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516953		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516327		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517204		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516019		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516528		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516190		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000515993		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517219		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517043		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516771		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517232		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516773		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516482		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516241		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516728		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517079		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517242		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000362607		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000517250		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-3UTR	ENST00000554171	ENST00000516049		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516540		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000554171	ENST00000516287		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	LRFN5	chr14	42077765	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000342922	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000342922	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000402799	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000402799	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000311027	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000311027	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000406482	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000406482	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000407859	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000407859	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000349238	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000349238	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000395344	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000395344	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000395336	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000395336	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000402192	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000402192	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000405573	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000405573	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000489415	ENST00000515029		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
intron-intron	ENST00000489415	ENST00000393067		TCGA	LD	ACC	TCGA-OR-A5JZ-01A	MADD	chr11	47348409	+	POU2AF1	chr11	111229607	-
5UTR-3CDS	ENST00000343411	ENST00000299709		TCGA	LD	ACC	TCGA-OR-A5K0-01A	MBTPS1	chr16	84150340	-	SLC38A8	chr16	84050332	-
intron-3CDS	ENST00000569770	ENST00000299709		TCGA	LD	ACC	TCGA-OR-A5K0-01A	MBTPS1	chr16	84150340	-	SLC38A8	chr16	84050332	-
5CDS-intron	ENST00000441493	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000400561	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000444520	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000414725	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000383094	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000207726	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000429452	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000585038	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
intron-intron	ENST00000580469	ENST00000426585		TCGA	LD	ACC	TCGA-OR-A5K2-01A	MICAL3	chr22	18299456	-	TPTEP1	chr22	17178386	+
In-frame	ENST00000589123	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000589123	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000589123	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000589123	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
In-frame	ENST00000346156	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000346156	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000346156	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000346156	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
In-frame	ENST00000395111	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000395111	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000395111	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000395111	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
In-frame	ENST00000586919	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000586919	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000586919	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000586919	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000341919	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000341919	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000341919	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000341919	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000590282	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000590282	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000590282	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000590282	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000443272	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000443272	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000443272	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000443272	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000588839	ENST00000301031		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000588839	ENST00000579310		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000588839	ENST00000568929		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000588839	ENST00000566857		TCGA	LD	ACC	TCGA-OR-A5K2-01A	NFIC	chr19	3359683	+	SPATA33	chr16	89735694	+
In-frame	ENST00000330676	ENST00000294304		TCGA	LD	ACC	TCGA-OR-A5K2-01A	TLCD2	chr17	1612793	-	LRP5	chr11	68177382	+
5CDS-intron	ENST00000330676	ENST00000529481		TCGA	LD	ACC	TCGA-OR-A5K2-01A	TLCD2	chr17	1612793	-	LRP5	chr11	68177382	+
intron-5UTR	ENST00000349938	ENST00000602212		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-intron	ENST00000349938	ENST00000602189		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-5UTR	ENST00000349938	ENST00000449844		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-intron	ENST00000349938	ENST00000439365		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-5UTR	ENST00000483477	ENST00000602212		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-intron	ENST00000483477	ENST00000602189		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-5UTR	ENST00000483477	ENST00000449844		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
intron-intron	ENST00000483477	ENST00000439365		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ARMC9	chr2	232063655	+	NPAS1	chr19	47524263	+
Frame-shit	ENST00000530758	ENST00000287647		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
Frame-shit	ENST00000530758	ENST00000383807		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-3UTR	ENST00000530758	ENST00000383806		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-3UTR	ENST00000530758	ENST00000419585		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-intron	ENST00000530758	ENST00000431693		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-intron	ENST00000530758	ENST00000438741		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
Frame-shit	ENST00000256463	ENST00000287647		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
Frame-shit	ENST00000256463	ENST00000383807		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-3UTR	ENST00000256463	ENST00000383806		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-3UTR	ENST00000256463	ENST00000419585		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-intron	ENST00000256463	ENST00000431693		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-intron	ENST00000256463	ENST00000438741		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BRK1	chr3	10157503	+	FANCD2	chr3	10138010	+
5CDS-5UTR	ENST00000370187	ENST00000401998		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370187	ENST00000361114		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370187	ENST00000398761		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-intron	ENST00000370187	ENST00000418483		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-intron	ENST00000370187	ENST00000398763		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370187	ENST00000604025		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000393441	ENST00000401998		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000393441	ENST00000361114		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000393441	ENST00000398761		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-intron	ENST00000393441	ENST00000418483		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-intron	ENST00000393441	ENST00000398763		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000393441	ENST00000604025		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000408038	ENST00000401998		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000408038	ENST00000361114		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000408038	ENST00000398761		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-intron	ENST00000408038	ENST00000418483		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-intron	ENST00000408038	ENST00000398763		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000408038	ENST00000604025		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000493877	ENST00000401998		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000493877	ENST00000361114		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000493877	ENST00000398761		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
intron-intron	ENST00000493877	ENST00000418483		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
intron-intron	ENST00000493877	ENST00000398763		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000493877	ENST00000604025		TCGA	LD	ACC	TCGA-OR-A5K5-01A	BTRC	chr10	103113985	+	MICU1	chr10	74326552	-
5UTR-3CDS	ENST00000446765	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000446765	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000446765	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-intron	ENST00000446765	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000342166	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000342166	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000342166	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-intron	ENST00000342166	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000295066	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000295066	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000295066	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
intron-intron	ENST00000295066	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	DPY30	chr2	32142995	-	MCU	chr10	74594117	+
5CDS-3UTR	ENST00000359204	ENST00000473240		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000359204	ENST00000429691		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000359204	ENST00000437150		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000359204	ENST00000233612		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
intron-3UTR	ENST00000460752	ENST00000473240		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
intron-3UTR	ENST00000460752	ENST00000429691		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
intron-3UTR	ENST00000460752	ENST00000437150		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
intron-3UTR	ENST00000460752	ENST00000233612		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000536233	ENST00000473240		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000536233	ENST00000429691		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000536233	ENST00000437150		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000536233	ENST00000233612		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000371430	ENST00000473240		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000371430	ENST00000429691		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000371430	ENST00000437150		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000371430	ENST00000233612		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000394100	ENST00000473240		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000394100	ENST00000429691		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000394100	ENST00000437150		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-3UTR	ENST00000394100	ENST00000233612		TCGA	LD	ACC	TCGA-OR-A5K5-01A	FRA10AC1	chr10	95443813	-	GCA	chr2	163208848	+
5CDS-intron	ENST00000409785	ENST00000494188		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
5CDS-intron	ENST00000409785	ENST00000409892		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
5CDS-intron	ENST00000409785	ENST00000409784		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
5CDS-intron	ENST00000409785	ENST00000398529		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
5CDS-intron	ENST00000409785	ENST00000409751		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
5CDS-intron	ENST00000409785	ENST00000260638		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
5CDS-intron	ENST00000409785	ENST00000356214		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCMF1	chr2	85198590	+	RAB1A	chr2	65325200	-
Frame-shit	ENST00000404771	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000372440	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000372443	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000286628	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000286627	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000354353	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000404857	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000406533	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
intron-3CDS	ENST00000484507	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000481070	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000480683	ENST00000357949		TCGA	LD	ACC	TCGA-OR-A5K5-01A	KCNMA1	chr10	79397023	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000295065	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000295065	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000295065	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5CDS-intron	ENST00000295065	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000379383	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000379383	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000379383	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5CDS-intron	ENST00000379383	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
In-frame	ENST00000404530	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
In-frame	ENST00000404530	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
In-frame	ENST00000404530	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5CDS-intron	ENST00000404530	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000490459	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000490459	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000490459	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-intron	ENST00000490459	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000426310	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000426310	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
Frame-shit	ENST00000426310	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5CDS-intron	ENST00000426310	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000407893	ENST00000373053		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000407893	ENST00000357157		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000407893	ENST00000536019		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
intron-intron	ENST00000407893	ENST00000605416		TCGA	LD	ACC	TCGA-OR-A5K5-01A	MEMO1	chr2	32142995	-	MCU	chr10	74594117	+
5UTR-intron	ENST00000582888	ENST00000221496		TCGA	LD	ACC	TCGA-OR-A5K5-01A	OAZ1	chr19	2269589	+	AMH	chr19	2250190	+
5UTR-intron	ENST00000602676	ENST00000221496		TCGA	LD	ACC	TCGA-OR-A5K5-01A	OAZ1	chr19	2269589	+	AMH	chr19	2250190	+
5UTR-intron	ENST00000322297	ENST00000221496		TCGA	LD	ACC	TCGA-OR-A5K5-01A	OAZ1	chr19	2269589	+	AMH	chr19	2250190	+
5UTR-intron	ENST00000583542	ENST00000221496		TCGA	LD	ACC	TCGA-OR-A5K5-01A	OAZ1	chr19	2269589	+	AMH	chr19	2250190	+
intron-intron	ENST00000588673	ENST00000221496		TCGA	LD	ACC	TCGA-OR-A5K5-01A	OAZ1	chr19	2269589	+	AMH	chr19	2250190	+
Frame-shit	ENST00000409528	ENST00000360093		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000409528	ENST00000283254		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000409528	ENST00000409101		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
5CDS-intron	ENST00000409528	ENST00000540861		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
5CDS-intron	ENST00000409528	ENST00000465043		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000409173	ENST00000360093		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000409173	ENST00000283254		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000409173	ENST00000409101		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
5CDS-intron	ENST00000409173	ENST00000540861		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
5CDS-intron	ENST00000409173	ENST00000465043		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000412401	ENST00000360093		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000412401	ENST00000283254		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
Frame-shit	ENST00000412401	ENST00000409101		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
5CDS-intron	ENST00000412401	ENST00000540861		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
5CDS-intron	ENST00000412401	ENST00000465043		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
3UTR-3CDS	ENST00000486293	ENST00000360093		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
3UTR-3CDS	ENST00000486293	ENST00000283254		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
3UTR-3CDS	ENST00000486293	ENST00000409101		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
3UTR-intron	ENST00000486293	ENST00000540861		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
3UTR-intron	ENST00000486293	ENST00000465043		TCGA	LD	ACC	TCGA-OR-A5K5-01A	TMEM182	chr2	103380886	+	SCN3A	chr2	166021030	-
3UTR-3CDS	ENST00000409573	ENST00000406610		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-3CDS	ENST00000409573	ENST00000462231		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-3CDS	ENST00000409573	ENST00000349953		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-intron	ENST00000409573	ENST00000358768		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-intron	ENST00000409573	ENST00000351153		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-intron	ENST00000409573	ENST00000488622		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-3CDS	ENST00000272570	ENST00000406610		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-3CDS	ENST00000272570	ENST00000462231		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-3CDS	ENST00000272570	ENST00000349953		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-intron	ENST00000272570	ENST00000358768		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-intron	ENST00000272570	ENST00000351153		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
3UTR-intron	ENST00000272570	ENST00000488622		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
intron-3CDS	ENST00000476902	ENST00000406610		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
intron-3CDS	ENST00000476902	ENST00000462231		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
intron-3CDS	ENST00000476902	ENST00000349953		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
intron-intron	ENST00000476902	ENST00000358768		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
intron-intron	ENST00000476902	ENST00000351153		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
intron-intron	ENST00000476902	ENST00000488622		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZC3H8	chr2	112988480	-	PARD3B	chr2	206023446	+
5CDS-intron	ENST00000296326	ENST00000419333		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
5CDS-intron	ENST00000296326	ENST00000292823		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
5CDS-intron	ENST00000296326	ENST00000431016		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
5CDS-intron	ENST00000296326	ENST00000491544		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
intron-intron	ENST00000488508	ENST00000419333		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
intron-intron	ENST00000488508	ENST00000292823		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
intron-intron	ENST00000488508	ENST00000431016		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
intron-intron	ENST00000488508	ENST00000491544		TCGA	LD	ACC	TCGA-OR-A5K5-01A	ZDHHC19	chr3	195934269	-	PCYT1A	chr3	195941369	-
5UTR-3CDS	ENST00000548241	ENST00000336061		TCGA	LD	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56637022	-	RASSF3	chr12	65085250	+
5UTR-3CDS	ENST00000548241	ENST00000542104		TCGA	LD	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56637022	-	RASSF3	chr12	65085250	+
5UTR-intron	ENST00000548241	ENST00000540088		TCGA	LD	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56637022	-	RASSF3	chr12	65085250	+
intron-3CDS	ENST00000267116	ENST00000336061		TCGA	LD	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56637022	-	RASSF3	chr12	65085250	+
intron-3CDS	ENST00000267116	ENST00000542104		TCGA	LD	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56637022	-	RASSF3	chr12	65085250	+
intron-intron	ENST00000267116	ENST00000540088		TCGA	LD	ACC	TCGA-OR-A5K9-01A	ANKRD52	chr12	56637022	-	RASSF3	chr12	65085250	+
5CDS-intron	ENST00000264833	ENST00000283426		TCGA	LD	ACC	TCGA-OR-A5K9-01A	OLFM2	chr19	10046980	-	PLEKHG4B	chr5	113366	+
intron-intron	ENST00000590841	ENST00000283426		TCGA	LD	ACC	TCGA-OR-A5K9-01A	OLFM2	chr19	10046980	-	PLEKHG4B	chr5	113366	+
intron-5UTR	ENST00000264560	ENST00000221566		TCGA	LD	ACC	TCGA-OR-A5K9-01A	PALM	chr19	719657	+	SGTA	chr19	2769089	-
intron-intron	ENST00000264560	ENST00000586711		TCGA	LD	ACC	TCGA-OR-A5K9-01A	PALM	chr19	719657	+	SGTA	chr19	2769089	-
intron-5UTR	ENST00000338448	ENST00000221566		TCGA	LD	ACC	TCGA-OR-A5K9-01A	PALM	chr19	719657	+	SGTA	chr19	2769089	-
intron-intron	ENST00000338448	ENST00000586711		TCGA	LD	ACC	TCGA-OR-A5K9-01A	PALM	chr19	719657	+	SGTA	chr19	2769089	-
intron-5UTR	ENST00000593172	ENST00000221566		TCGA	LD	ACC	TCGA-OR-A5K9-01A	PALM	chr19	719657	+	SGTA	chr19	2769089	-
intron-intron	ENST00000593172	ENST00000586711		TCGA	LD	ACC	TCGA-OR-A5K9-01A	PALM	chr19	719657	+	SGTA	chr19	2769089	-
5CDS-5UTR	ENST00000247001	ENST00000427043		TCGA	LD	ACC	TCGA-OR-A5K9-01A	SUGP1	chr19	19427231	-	CASP14	chr19	15163017	+
5CDS-5UTR	ENST00000247001	ENST00000221740		TCGA	LD	ACC	TCGA-OR-A5K9-01A	SUGP1	chr19	19427231	-	CASP14	chr19	15163017	+
5UTR-5UTR	ENST00000585763	ENST00000427043		TCGA	LD	ACC	TCGA-OR-A5K9-01A	SUGP1	chr19	19427231	-	CASP14	chr19	15163017	+
5UTR-5UTR	ENST00000585763	ENST00000221740		TCGA	LD	ACC	TCGA-OR-A5K9-01A	SUGP1	chr19	19427231	-	CASP14	chr19	15163017	+
5CDS-5UTR	ENST00000334782	ENST00000427043		TCGA	LD	ACC	TCGA-OR-A5K9-01A	SUGP1	chr19	19427231	-	CASP14	chr19	15163017	+
5CDS-5UTR	ENST00000334782	ENST00000221740		TCGA	LD	ACC	TCGA-OR-A5K9-01A	SUGP1	chr19	19427231	-	CASP14	chr19	15163017	+
5CDS-intron	ENST00000253928	ENST00000572980		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
5CDS-5UTR	ENST00000253928	ENST00000299866		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
5CDS-intron	ENST00000399667	ENST00000572980		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
5CDS-5UTR	ENST00000399667	ENST00000299866		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
5CDS-intron	ENST00000416288	ENST00000572980		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
5CDS-5UTR	ENST00000416288	ENST00000299866		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
3UTR-intron	ENST00000570752	ENST00000572980		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
3UTR-5UTR	ENST00000570752	ENST00000299866		TCGA	LD	ACC	TCGA-OR-A5KO-01A	FLYWCH1	chr16	2990093	+	TVP23A	chr16	10912625	-
5CDS-intron	ENST00000367121	ENST00000570123		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367121	ENST00000568794		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367121	ENST00000253452		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367121	ENST00000562336		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367121	ENST00000561569		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-3UTR	ENST00000367121	ENST00000564903		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367122	ENST00000570123		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367122	ENST00000568794		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367122	ENST00000253452		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367122	ENST00000562336		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000367122	ENST00000561569		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-3UTR	ENST00000367122	ENST00000564903		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000355585	ENST00000570123		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000355585	ENST00000568794		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000355585	ENST00000253452		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000355585	ENST00000562336		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-intron	ENST00000355585	ENST00000561569		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5CDS-3UTR	ENST00000355585	ENST00000564903		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000449859	ENST00000570123		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000449859	ENST00000568794		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000449859	ENST00000253452		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000449859	ENST00000562336		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000449859	ENST00000561569		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-3UTR	ENST00000449859	ENST00000564903		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000367112	ENST00000570123		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000367112	ENST00000568794		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000367112	ENST00000253452		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000367112	ENST00000562336		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-intron	ENST00000367112	ENST00000561569		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
intron-3UTR	ENST00000367112	ENST00000564903		TCGA	LD	ACC	TCGA-OR-A5KO-01A	SYNJ2	chr6	158489760	+	COX4I1	chr16	85840433	+
5UTR-3CDS	ENST00000552432	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000552432	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000552432	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000547379	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000547379	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000547379	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000549465	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000549465	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
5UTR-3CDS	ENST00000549465	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000552024	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000552024	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000552024	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000261187	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000261187	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000261187	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000543448	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000543448	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000543448	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000549588	ENST00000444631		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000549588	ENST00000336133		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
intron-3CDS	ENST00000549588	ENST00000552080		TCGA	LD	ACC	TCGA-OR-A5KT-01A	SLC16A7	chr12	59990017	+	SARNP	chr12	56154424	-
In-frame	ENST00000336470	ENST00000289619		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
5CDS-5UTR	ENST00000336470	ENST00000374955		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
5CDS-5UTR	ENST00000336470	ENST00000374952		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
In-frame	ENST00000360845	ENST00000289619		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
5CDS-5UTR	ENST00000360845	ENST00000374955		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
5CDS-5UTR	ENST00000360845	ENST00000374952		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
3UTR-3CDS	ENST00000489691	ENST00000289619		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
3UTR-5UTR	ENST00000489691	ENST00000374955		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
3UTR-5UTR	ENST00000489691	ENST00000374952		TCGA	LD	ACC	TCGA-OR-A5KV-01A	GNL3L	chrX	54559018	+	PAGE5	chrX	55247808	+
In-frame	ENST00000426335	ENST00000298838		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
In-frame	ENST00000426335	ENST00000539589		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
In-frame	ENST00000524782	ENST00000298838		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
In-frame	ENST00000524782	ENST00000539589		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
5UTR-3CDS	ENST00000395449	ENST00000298838		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
5UTR-3CDS	ENST00000395449	ENST00000539589		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
Frame-shit	ENST00000319543	ENST00000298838		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
Frame-shit	ENST00000319543	ENST00000539589		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
Frame-shit	ENST00000419701	ENST00000298838		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
Frame-shit	ENST00000419701	ENST00000539589		TCGA	LD	ACC	TCGA-OR-A5KW-01A	ARFGAP2	chr11	47192977	-	PACSIN3	chr11	47200038	-
In-frame	ENST00000431231	ENST00000394332		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
Frame-shit	ENST00000431231	ENST00000394333		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
Frame-shit	ENST00000431231	ENST00000479035		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000431231	ENST00000245857		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000431231	ENST00000577407		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
In-frame	ENST00000437668	ENST00000394332		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
Frame-shit	ENST00000437668	ENST00000394333		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
Frame-shit	ENST00000437668	ENST00000479035		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000437668	ENST00000245857		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000437668	ENST00000577407		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
intron-3CDS	ENST00000582409	ENST00000394332		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
intron-3CDS	ENST00000582409	ENST00000394333		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
intron-3CDS	ENST00000582409	ENST00000479035		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
intron-5UTR	ENST00000582409	ENST00000245857		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
intron-5UTR	ENST00000582409	ENST00000577407		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
In-frame	ENST00000443378	ENST00000394332		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
Frame-shit	ENST00000443378	ENST00000394333		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
Frame-shit	ENST00000443378	ENST00000479035		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000443378	ENST00000245857		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000443378	ENST00000577407		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ARHGAP23	chr17	36638919	+	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000263382	ENST00000393029		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-intron	ENST00000263382	ENST00000393028		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-intron	ENST00000263382	ENST00000345425		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000263382	ENST00000393033		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000263382	ENST00000591349		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000263382	ENST00000586027		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000592798	ENST00000393029		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-intron	ENST00000592798	ENST00000393028		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-intron	ENST00000592798	ENST00000345425		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000592798	ENST00000393033		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000592798	ENST00000591349		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000592798	ENST00000586027		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000474890	ENST00000393029		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-intron	ENST00000474890	ENST00000393028		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-intron	ENST00000474890	ENST00000345425		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000474890	ENST00000393033		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000474890	ENST00000591349		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-5UTR	ENST00000474890	ENST00000586027		TCGA	LD	ACC	TCGA-OR-A5KX-01A	ASF1B	chr19	14247160	-	GIPC1	chr19	14602555	-
5CDS-3UTR	ENST00000430627	ENST00000425901		TCGA	LD	ACC	TCGA-OR-A5KX-01A	CDK12	chr17	37619370	+	LRRC37A11P	chr17	37190423	+
5CDS-3UTR	ENST00000447079	ENST00000425901		TCGA	LD	ACC	TCGA-OR-A5KX-01A	CDK12	chr17	37619370	+	LRRC37A11P	chr17	37190423	+
intron-3UTR	ENST00000559545	ENST00000425901		TCGA	LD	ACC	TCGA-OR-A5KX-01A	CDK12	chr17	37619370	+	LRRC37A11P	chr17	37190423	+
5UTR-3CDS	ENST00000393029	ENST00000269703		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000393029	ENST00000601005		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
intron-3CDS	ENST00000393028	ENST00000269703		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
intron-3CDS	ENST00000393028	ENST00000601005		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
intron-3CDS	ENST00000345425	ENST00000269703		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
intron-3CDS	ENST00000345425	ENST00000601005		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000393033	ENST00000269703		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000393033	ENST00000601005		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000591349	ENST00000269703		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000591349	ENST00000601005		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000586027	ENST00000269703		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000586027	ENST00000601005		TCGA	LD	ACC	TCGA-OR-A5KX-01A	GIPC1	chr19	14602468	-	CYP4F22	chr19	15658919	+
5UTR-3CDS	ENST00000292539	ENST00000530047		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-3CDS	ENST00000292539	ENST00000527078		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-3CDS	ENST00000292539	ENST00000402965		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-3CDS	ENST00000292539	ENST00000532887		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-3CDS	ENST00000292539	ENST00000329994		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-intron	ENST00000292539	ENST00000526891		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-intron	ENST00000292539	ENST00000540505		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5UTR-intron	ENST00000292539	ENST00000526752		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-3CDS	ENST00000529009	ENST00000530047		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-3CDS	ENST00000529009	ENST00000527078		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-3CDS	ENST00000529009	ENST00000402965		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-3CDS	ENST00000529009	ENST00000532887		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-3CDS	ENST00000529009	ENST00000329994		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-intron	ENST00000529009	ENST00000526891		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-intron	ENST00000529009	ENST00000540505		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
3UTR-intron	ENST00000529009	ENST00000526752		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-3CDS	ENST00000435887	ENST00000530047		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-3CDS	ENST00000435887	ENST00000527078		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-3CDS	ENST00000435887	ENST00000402965		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-3CDS	ENST00000435887	ENST00000532887		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-3CDS	ENST00000435887	ENST00000329994		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-intron	ENST00000435887	ENST00000526891		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-intron	ENST00000435887	ENST00000540505		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
intron-intron	ENST00000435887	ENST00000526752		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP1R16A	chr8	145715595	+	SLC52A2	chr8	145583775	+
5CDS-5UTR	ENST00000234310	ENST00000492039		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
5CDS-5UTR	ENST00000234310	ENST00000295121		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
5CDS-5UTR	ENST00000234310	ENST00000406245		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
5CDS-5UTR	ENST00000234310	ENST00000409164		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409752	ENST00000492039		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409752	ENST00000295121		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409752	ENST00000406245		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409752	ENST00000409164		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409377	ENST00000492039		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409377	ENST00000295121		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409377	ENST00000406245		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
intron-5UTR	ENST00000409377	ENST00000409164		TCGA	LD	ACC	TCGA-OR-A5KX-01A	PPP3R1	chr2	68479257	-	WDR92	chr2	68371847	-
5CDS-intron	ENST00000416293	ENST00000464611		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH2	chr12	112236046	+	ACTB	chr7	5569294	-
5CDS-5UTR	ENST00000416293	ENST00000331789		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH2	chr12	112236046	+	ACTB	chr7	5569294	-
5CDS-intron	ENST00000261733	ENST00000464611		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH2	chr12	112236046	+	ACTB	chr7	5569294	-
5CDS-5UTR	ENST00000261733	ENST00000331789		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH2	chr12	112236046	+	ACTB	chr7	5569294	-
In-frame	ENST00000176643	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000176643	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
In-frame	ENST00000581518	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000581518	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
In-frame	ENST00000395575	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000395575	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
In-frame	ENST00000339618	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000339618	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
In-frame	ENST00000579855	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000579855	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-3CDS	ENST00000571163	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000571163	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-3CDS	ENST00000574597	ENST00000336452		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000336458		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000576930		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000572815		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000573542		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000419711		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000571955		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000574597	ENST00000416016		TCGA	LD	ACC	TCGA-OR-A5KY-01A	ALDH3A2	chr17	19575269	+	EIF5A	chr17	7212934	+
In-frame	ENST00000298834	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
In-frame	ENST00000426438	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
In-frame	ENST00000314845	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
In-frame	ENST00000533727	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
In-frame	ENST00000534300	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
In-frame	ENST00000458649	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
Frame-shit	ENST00000528950	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
5UTR-3CDS	ENST00000529963	ENST00000378623		TCGA	LD	ACC	TCGA-OR-A5KY-01A	AMBRA1	chr11	46515158	-	LRP4	chr11	46898381	-
5CDS-5UTR	ENST00000574322	ENST00000572262		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000575314		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000574539		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000576478		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000570547		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000572182		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000576728		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000340624		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000441599		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000380450		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000575903		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000574322	ENST00000416273		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000572262		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000575314		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000574539		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000576478		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000570547		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000572182		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000576728		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000340624		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000441599		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000380450		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000575903		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000573600	ENST00000416273		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000572262		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000575314		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000574539		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000576478		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000570547		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000572182		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000576728		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000340624		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000441599		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000380450		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000575903		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000318988	ENST00000416273		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000572262		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000575314		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000574539		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000576478		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000570547		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000572182		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000576728		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000340624		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000441599		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000380450		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000575903		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
5CDS-5UTR	ENST00000572043	ENST00000416273		TCGA	LD	ACC	TCGA-OR-A5KY-01A	CTDNEP1	chr17	7149345	-	SHBG	chr17	7533734	+
In-frame	ENST00000421905	ENST00000589651		TCGA	LD	ACC	TCGA-OR-A5KY-01A	PPP1R37	chr19	45596785	+	BCAM	chr19	45314482	+
In-frame	ENST00000421905	ENST00000270233		TCGA	LD	ACC	TCGA-OR-A5KY-01A	PPP1R37	chr19	45596785	+	BCAM	chr19	45314482	+
In-frame	ENST00000221462	ENST00000589651		TCGA	LD	ACC	TCGA-OR-A5KY-01A	PPP1R37	chr19	45596785	+	BCAM	chr19	45314482	+
In-frame	ENST00000221462	ENST00000270233		TCGA	LD	ACC	TCGA-OR-A5KY-01A	PPP1R37	chr19	45596785	+	BCAM	chr19	45314482	+
3UTR-3CDS	ENST00000496125	ENST00000589651		TCGA	LD	ACC	TCGA-OR-A5KY-01A	PPP1R37	chr19	45596785	+	BCAM	chr19	45314482	+
3UTR-3CDS	ENST00000496125	ENST00000270233		TCGA	LD	ACC	TCGA-OR-A5KY-01A	PPP1R37	chr19	45596785	+	BCAM	chr19	45314482	+
In-frame	ENST00000341567	ENST00000306279		TCGA	LD	ACC	TCGA-OR-A5KY-01A	TMEM248	chr7	66407011	+	ATOH8	chr2	85991114	+
5CDS-3UTR	ENST00000341567	ENST00000463422		TCGA	LD	ACC	TCGA-OR-A5KY-01A	TMEM248	chr7	66407011	+	ATOH8	chr2	85991114	+
Frame-shit	ENST00000372899	ENST00000367993		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-3UTR	ENST00000372899	ENST00000392179		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-intron	ENST00000372899	ENST00000476409		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-3UTR	ENST00000372899	ENST00000465923		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
Frame-shit	ENST00000372901	ENST00000367993		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-3UTR	ENST00000372901	ENST00000392179		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-intron	ENST00000372901	ENST00000476409		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-3UTR	ENST00000372901	ENST00000465923		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
Frame-shit	ENST00000372883	ENST00000367993		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-3UTR	ENST00000372883	ENST00000392179		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-intron	ENST00000372883	ENST00000476409		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
5CDS-3UTR	ENST00000372883	ENST00000465923		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
intron-3CDS	ENST00000372903	ENST00000367993		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
intron-3UTR	ENST00000372903	ENST00000392179		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
intron-intron	ENST00000372903	ENST00000476409		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
intron-3UTR	ENST00000372903	ENST00000465923		TCGA	LD	ACC	TCGA-OR-A5KZ-01A	UBR2	chr6	42610219	+	NDUFS2	chr1	161183946	+
Frame-shit	ENST00000353442	ENST00000397901		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000353442	ENST00000253475		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000353442	ENST00000535997		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000353442	ENST00000550102		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000353442	ENST00000547614		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000359422	ENST00000397901		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000359422	ENST00000253475		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000359422	ENST00000535997		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000359422	ENST00000550102		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000359422	ENST00000547614		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000354505	ENST00000397901		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000354505	ENST00000253475		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000354505	ENST00000535997		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000354505	ENST00000550102		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000354505	ENST00000547614		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000540390	ENST00000397901		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000540390	ENST00000253475		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000540390	ENST00000535997		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000540390	ENST00000550102		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000540390	ENST00000547614		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430825	ENST00000397901		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430825	ENST00000253475		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430825	ENST00000535997		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430825	ENST00000550102		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000430825	ENST00000547614		TCGA	LD	ACC	TCGA-OR-A5LB-01A	LMBR1	chr7	156516806	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000406775	ENST00000577730		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000406775	ENST00000299345		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000406775	ENST00000577390		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000406775	ENST00000584337		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
5CDS-intron	ENST00000406775	ENST00000580044		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000342771	ENST00000577730		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000342771	ENST00000299345		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000342771	ENST00000577390		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
Frame-shit	ENST00000342771	ENST00000584337		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
5CDS-intron	ENST00000342771	ENST00000580044		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000403018	ENST00000577730		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000403018	ENST00000299345		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000403018	ENST00000577390		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000403018	ENST00000584337		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
intron-intron	ENST00000403018	ENST00000580044		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
3UTR-3CDS	ENST00000489774	ENST00000577730		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
3UTR-3CDS	ENST00000489774	ENST00000299345		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
3UTR-3CDS	ENST00000489774	ENST00000577390		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
3UTR-3CDS	ENST00000489774	ENST00000584337		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
3UTR-intron	ENST00000489774	ENST00000580044		TCGA	LD	ACC	TCGA-OR-A5LD-01A	AUTS2	chr7	70163606	+	CDH8	chr16	61935377	-
In-frame	ENST00000389709	ENST00000290868		TCGA	LD	ACC	TCGA-OR-A5LD-01A	ZXDC	chr3	126184998	-	UROC1	chr3	126201328	-
Frame-shit	ENST00000389709	ENST00000383579		TCGA	LD	ACC	TCGA-OR-A5LD-01A	ZXDC	chr3	126184998	-	UROC1	chr3	126201328	-
In-frame	ENST00000336332	ENST00000290868		TCGA	LD	ACC	TCGA-OR-A5LD-01A	ZXDC	chr3	126184998	-	UROC1	chr3	126201328	-
Frame-shit	ENST00000336332	ENST00000383579		TCGA	LD	ACC	TCGA-OR-A5LD-01A	ZXDC	chr3	126184998	-	UROC1	chr3	126201328	-
5CDS-intron	ENST00000249064	ENST00000381911		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000249064	ENST00000381906		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000249064	ENST00000252898		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000249064	ENST00000381905		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000448492	ENST00000381911		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000448492	ENST00000381906		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000448492	ENST00000252898		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000448492	ENST00000381905		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000421503	ENST00000381911		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000421503	ENST00000381906		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000421503	ENST00000252898		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
5CDS-intron	ENST00000421503	ENST00000381905		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
intron-intron	ENST00000443309	ENST00000381911		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
intron-intron	ENST00000443309	ENST00000381906		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
intron-intron	ENST00000443309	ENST00000252898		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
intron-intron	ENST00000443309	ENST00000381905		TCGA	LD	ACC	TCGA-OR-A5LE-01A	CCDC117	chr22	29169013	+	TNNI2	chr11	1862502	+
In-frame	ENST00000554752	ENST00000554963		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000554752	ENST00000256379		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000554752	ENST00000430055		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000554752	ENST00000440435		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
5CDS-5UTR	ENST00000554752	ENST00000556044		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000555993	ENST00000554963		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000555993	ENST00000256379		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000555993	ENST00000430055		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000555993	ENST00000440435		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
5CDS-5UTR	ENST00000555993	ENST00000556044		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000553414	ENST00000554963		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000553414	ENST00000256379		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000553414	ENST00000430055		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000553414	ENST00000440435		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
5CDS-5UTR	ENST00000553414	ENST00000556044		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000381250	ENST00000554963		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000381250	ENST00000256379		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000381250	ENST00000430055		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000381250	ENST00000440435		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
5CDS-5UTR	ENST00000381250	ENST00000556044		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000554146	ENST00000554963		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000554146	ENST00000256379		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000554146	ENST00000430055		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
Frame-shit	ENST00000554146	ENST00000440435		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
5CDS-5UTR	ENST00000554146	ENST00000556044		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MAP3K9	chr14	71216650	-	MED6	chr14	71060095	-
In-frame	ENST00000554963	ENST00000554752		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000554963	ENST00000555993		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000554963	ENST00000553414		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000554963	ENST00000381250		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000554963	ENST00000554146		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000256379	ENST00000554752		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000256379	ENST00000555993		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000256379	ENST00000553414		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000256379	ENST00000381250		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000256379	ENST00000554146		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000430055	ENST00000554752		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000430055	ENST00000555993		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000430055	ENST00000553414		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000430055	ENST00000381250		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000430055	ENST00000554146		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000440435	ENST00000554752		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
In-frame	ENST00000440435	ENST00000555993		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000440435	ENST00000553414		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000440435	ENST00000381250		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5CDS-5UTR	ENST00000440435	ENST00000554146		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5UTR-3CDS	ENST00000556044	ENST00000554752		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5UTR-3CDS	ENST00000556044	ENST00000555993		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5UTR-5UTR	ENST00000556044	ENST00000553414		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5UTR-5UTR	ENST00000556044	ENST00000381250		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5UTR-5UTR	ENST00000556044	ENST00000554146		TCGA	LD	ACC	TCGA-OR-A5LG-01A	MED6	chr14	71063328	-	MAP3K9	chr14	71227899	-
5UTR-3CDS	ENST00000362074	ENST00000367964		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
5UTR-3CDS	ENST00000362074	ENST00000294800		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
5UTR-3CDS	ENST00000362074	ENST00000531221		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
5UTR-3CDS	ENST00000344859	ENST00000367964		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
5UTR-3CDS	ENST00000344859	ENST00000294800		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
5UTR-3CDS	ENST00000344859	ENST00000531221		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
intron-3CDS	ENST00000369340	ENST00000367964		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
intron-3CDS	ENST00000369340	ENST00000294800		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
intron-3CDS	ENST00000369340	ENST00000531221		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
intron-3CDS	ENST00000479995	ENST00000367964		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
intron-3CDS	ENST00000479995	ENST00000294800		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
intron-3CDS	ENST00000479995	ENST00000531221		TCGA	LD	ACC	TCGA-OR-A5LL-01A	NOTCH2NL	chr1	145209436	-	FCGR3B	chr1	161600178	-
In-frame	ENST00000600228	ENST00000283351		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000600228	ENST00000582539		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000600228	ENST00000582513		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000600228	ENST00000584876		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
Frame-shit	ENST00000330123	ENST00000283351		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000330123	ENST00000582539		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000330123	ENST00000582513		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000330123	ENST00000584876		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
In-frame	ENST00000596290	ENST00000283351		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000596290	ENST00000582539		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000596290	ENST00000582513		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000596290	ENST00000584876		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
In-frame	ENST00000597013	ENST00000283351		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000597013	ENST00000582539		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000597013	ENST00000582513		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
5CDS-5UTR	ENST00000597013	ENST00000584876		TCGA	LD	ACC	TCGA-OR-A5LL-01A	ZNF616	chr19	52633754	-	TRAPPC8	chr18	29511486	-
Frame-shit	ENST00000373451	ENST00000416247		TCGA	LD	ACC	TCGA-OR-A5LM-01A	CMTR1	chr6	37441377	+	SMIM13	chr6	11134636	+
intron-3CDS	ENST00000493656	ENST00000416247		TCGA	LD	ACC	TCGA-OR-A5LM-01A	CMTR1	chr6	37441377	+	SMIM13	chr6	11134636	+
5CDS-5UTR	ENST00000356015	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000356015	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000356015	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-5UTR	ENST00000432560	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000432560	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000432560	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-5UTR	ENST00000357586	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000357586	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000357586	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-5UTR	ENST00000405198	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000405198	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000405198	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-5UTR	ENST00000317368	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000317368	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000317368	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-5UTR	ENST00000402502	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000402502	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000402502	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-5UTR	ENST00000415447	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000415447	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
5CDS-intron	ENST00000415447	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
intron-5UTR	ENST00000472057	ENST00000461286		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
intron-intron	ENST00000472057	ENST00000539579		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
intron-intron	ENST00000472057	ENST00000419368		TCGA	LD	ACC	TCGA-OR-A5LO-01A	AP1B1	chr22	29738274	-	RFPL1S	chr22	29838118	-
Frame-shit	ENST00000401084	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
5UTR-3CDS	ENST00000264203	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
Frame-shit	ENST00000375142	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
intron-3CDS	ENST00000433834	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
Frame-shit	ENST00000264202	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
5UTR-3CDS	ENST00000482808	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
intron-3CDS	ENST00000375144	ENST00000561890		TCGA	LD	ACC	TCGA-OR-A5LO-01A	CAPZB	chr1	19811930	-	MUC22	chr6	30993279	+
Frame-shit	ENST00000350339	ENST00000371817		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FCN2	chr9	137778410	+	COL5A1	chr9	137714844	+
5CDS-intron	ENST00000350339	ENST00000464187		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FCN2	chr9	137778410	+	COL5A1	chr9	137714844	+
Frame-shit	ENST00000291744	ENST00000371817		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FCN2	chr9	137778410	+	COL5A1	chr9	137714844	+
5CDS-intron	ENST00000291744	ENST00000464187		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FCN2	chr9	137778410	+	COL5A1	chr9	137714844	+
5CDS-5UTR	ENST00000335255	ENST00000483039		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
5CDS-5UTR	ENST00000335255	ENST00000396542		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
5CDS-intron	ENST00000335255	ENST00000349228		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
5CDS-intron	ENST00000335255	ENST00000338784		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
5CDS-intron	ENST00000335255	ENST00000380535		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
5CDS-intron	ENST00000335255	ENST00000396545		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
intron-5UTR	ENST00000529652	ENST00000483039		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
intron-5UTR	ENST00000529652	ENST00000396542		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
intron-intron	ENST00000529652	ENST00000349228		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
intron-intron	ENST00000529652	ENST00000338784		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
intron-intron	ENST00000529652	ENST00000380535		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
intron-intron	ENST00000529652	ENST00000396545		TCGA	LD	ACC	TCGA-OR-A5LO-01A	FOXK2	chr17	80478183	+	TNFSF13	chr17	7463163	+
3UTR-3CDS	ENST00000486890	ENST00000405402		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
3UTR-3CDS	ENST00000486890	ENST00000253458		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
3UTR-3CDS	ENST00000486890	ENST00000393243		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
3UTR-intron	ENST00000486890	ENST00000471070		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
In-frame	ENST00000322753	ENST00000405402		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
In-frame	ENST00000322753	ENST00000253458		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
In-frame	ENST00000322753	ENST00000393243		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
5CDS-intron	ENST00000322753	ENST00000471070		TCGA	LD	ACC	TCGA-OR-A5LO-01A	MINOS1	chr1	19923603	+	GSE1	chr16	85699582	+
5CDS-intron	ENST00000269919	ENST00000539907		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000269919	ENST00000540617		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000269919	ENST00000374840		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000269919	ENST00000468526		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000269919	ENST00000374832		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000269919	ENST00000425315		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000269919	ENST00000374830		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000269919	ENST00000374829		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000604499	ENST00000539907		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000604499	ENST00000540617		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000604499	ENST00000374840		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000604499	ENST00000468526		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000604499	ENST00000374832		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000604499	ENST00000425315		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000604499	ENST00000374830		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000604499	ENST00000374829		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000595066	ENST00000539907		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000595066	ENST00000540617		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000595066	ENST00000374840		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000595066	ENST00000468526		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000595066	ENST00000374832		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000595066	ENST00000425315		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000595066	ENST00000374830		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000595066	ENST00000374829		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-intron	ENST00000252813	ENST00000539907		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-intron	ENST00000252813	ENST00000540617		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-5UTR	ENST00000252813	ENST00000374840		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-intron	ENST00000252813	ENST00000468526		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-5UTR	ENST00000252813	ENST00000374832		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-intron	ENST00000252813	ENST00000425315		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-intron	ENST00000252813	ENST00000374830		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
intron-intron	ENST00000252813	ENST00000374829		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000597431	ENST00000539907		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000597431	ENST00000540617		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000597431	ENST00000374840		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000597431	ENST00000468526		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000597431	ENST00000374832		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000597431	ENST00000425315		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000597431	ENST00000374830		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000597431	ENST00000374829		TCGA	LD	ACC	TCGA-OR-A5LO-01A	PGPEP1	chr19	18453721	+	ALPL	chr1	21880471	+
Frame-shit	ENST00000395443	ENST00000538782		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
Frame-shit	ENST00000395443	ENST00000238651		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
5CDS-3UTR	ENST00000395443	ENST00000557857		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
Frame-shit	ENST00000357496	ENST00000538782		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
Frame-shit	ENST00000357496	ENST00000238651		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
5CDS-3UTR	ENST00000357496	ENST00000557857		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
Frame-shit	ENST00000424300	ENST00000538782		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
Frame-shit	ENST00000424300	ENST00000238651		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
5CDS-3UTR	ENST00000424300	ENST00000557857		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
intron-3CDS	ENST00000479449	ENST00000538782		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
intron-3CDS	ENST00000479449	ENST00000238651		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
intron-3UTR	ENST00000479449	ENST00000557857		TCGA	LD	ACC	TCGA-OR-A5LO-01A	QRICH1	chr3	49114142	-	ACOT2	chr14	74041612	+
Frame-shit	ENST00000336061	ENST00000604900		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000336061	ENST00000412716		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000336061	ENST00000449723		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000336061	ENST00000549555		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000336061	ENST00000439799		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000336061	ENST00000425012		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000336061	ENST00000549732		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
5CDS-3UTR	ENST00000336061	ENST00000551534		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
5CDS-5UTR	ENST00000336061	ENST00000551313		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000604900		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000412716		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000449723		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000549555		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000439799		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000425012		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
Frame-shit	ENST00000542104	ENST00000549732		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
5CDS-3UTR	ENST00000542104	ENST00000551534		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
5CDS-5UTR	ENST00000542104	ENST00000551313		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000604900		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000412716		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000449723		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000549555		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000439799		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000425012		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3CDS	ENST00000540088	ENST00000549732		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-3UTR	ENST00000540088	ENST00000551534		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
3UTR-5UTR	ENST00000540088	ENST00000551313		TCGA	LD	ACC	TCGA-OR-A5LO-01A	RASSF3	chr12	65004523	+	DAZAP2	chr12	51634127	+
5UTR-3CDS	ENST00000438125	ENST00000377897		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000438125	ENST00000294179		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000438125	ENST00000394690		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000438125	ENST00000541317		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000435769	ENST00000377897		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000435769	ENST00000294179		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000435769	ENST00000394690		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000435769	ENST00000541317		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000343721	ENST00000377897		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000343721	ENST00000294179		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000343721	ENST00000394690		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000343721	ENST00000541317		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000438904	ENST00000377897		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000438904	ENST00000294179		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000438904	ENST00000394690		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000438904	ENST00000541317		TCGA	LD	ACC	TCGA-OR-A5LR-01A	TYW1B	chr7	72297434	-	STX5	chr11	62575100	-
Frame-shit	ENST00000368485	ENST00000368482		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
Frame-shit	ENST00000368485	ENST00000368480		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
5CDS-3UTR	ENST00000368485	ENST00000479937		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
Frame-shit	ENST00000344086	ENST00000368482		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
Frame-shit	ENST00000344086	ENST00000368480		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
5CDS-3UTR	ENST00000344086	ENST00000479937		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
3UTR-3CDS	ENST00000507256	ENST00000368482		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
3UTR-3CDS	ENST00000507256	ENST00000368480		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
3UTR-3UTR	ENST00000507256	ENST00000479937		TCGA	LD	ACC	TCGA-OR-A5LS-01A	IL6R	chr1	154407632	+	TDRD10	chr1	154519885	+
In-frame	ENST00000424120	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000424120	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000413206	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000413206	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000503292	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000503292	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000389652	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000389652	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
Frame-shit	ENST00000438599	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
Frame-shit	ENST00000438599	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
Frame-shit	ENST00000511544	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
Frame-shit	ENST00000511544	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
3UTR-3CDS	ENST00000513811	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
3UTR-3CDS	ENST00000513811	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000507954	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000507954	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000515124	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
In-frame	ENST00000515124	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
Frame-shit	ENST00000503658	ENST00000265016		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
Frame-shit	ENST00000503658	ENST00000382346		TCGA	LD	ACC	TCGA-OU-A5PI-01A	CC2D2A	chr4	15482451	+	BST1	chr4	15713430	+
intron-3CDS	ENST00000476233	ENST00000375304		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
intron-3CDS	ENST00000476233	ENST00000168216		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
intron-3CDS	ENST00000476233	ENST00000375298		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
intron-5UTR	ENST00000476233	ENST00000495986		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
In-frame	ENST00000354667	ENST00000375304		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
In-frame	ENST00000354667	ENST00000168216		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
In-frame	ENST00000354667	ENST00000375298		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
5CDS-5UTR	ENST00000354667	ENST00000495986		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
In-frame	ENST00000356674	ENST00000375304		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
In-frame	ENST00000356674	ENST00000168216		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
In-frame	ENST00000356674	ENST00000375298		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
5CDS-5UTR	ENST00000356674	ENST00000495986		TCGA	LD	ACC	TCGA-OU-A5PI-01A	HNRNPA2B1	chr7	26240192	-	HSD17B10	chrX	53460833	-
5UTR-3CDS	ENST00000342907	ENST00000261776		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
5UTR-intron	ENST00000342907	ENST00000571759		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
5UTR-intron	ENST00000342907	ENST00000536184		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
intron-3CDS	ENST00000393640	ENST00000261776		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
intron-intron	ENST00000393640	ENST00000571759		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
intron-intron	ENST00000393640	ENST00000536184		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
5UTR-3CDS	ENST00000566097	ENST00000261776		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
5UTR-intron	ENST00000566097	ENST00000571759		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
5UTR-intron	ENST00000566097	ENST00000536184		TCGA	LD	ACC	TCGA-OU-A5PI-01A	ST3GAL2	chr16	70472852	-	VAC14	chr16	70806075	-
5CDS-5UTR	ENST00000325885	ENST00000447467		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000324972		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000537881		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000437599		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000359388		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000413338		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000325885	ENST00000457059		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
5CDS-intron	ENST00000325885	ENST00000497626		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000447467		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000324972		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000537881		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000437599		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000359388		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000413338		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000257621	ENST00000457059		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-intron	ENST00000257621	ENST00000497626		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000447467		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000324972		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000537881		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000437599		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000359388		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000413338		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000428113	ENST00000457059		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
intron-intron	ENST00000428113	ENST00000497626		TCGA	LD	ACC	TCGA-P6-A5OF-01A	ASB4	chr7	95165862	+	DYNC1I1	chr7	95434033	+
Frame-shit	ENST00000349769	ENST00000409379		TCGA	LD	ACC	TCGA-P6-A5OF-01A	CPSF1	chr8	145626318	-	TONSL	chr8	145654719	-
intron-3CDS	ENST00000531727	ENST00000409379		TCGA	LD	ACC	TCGA-P6-A5OF-01A	CPSF1	chr8	145626318	-	TONSL	chr8	145654719	-
5CDS-5UTR	ENST00000155840	ENST00000397374		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
5CDS-5UTR	ENST00000155840	ENST00000331588		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
5CDS-intron	ENST00000155840	ENST00000528778		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
5CDS-5UTR	ENST00000335475	ENST00000397374		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
5CDS-5UTR	ENST00000335475	ENST00000331588		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
5CDS-intron	ENST00000335475	ENST00000528778		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
3UTR-5UTR	ENST00000526095	ENST00000397374		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
3UTR-5UTR	ENST00000526095	ENST00000331588		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
3UTR-intron	ENST00000526095	ENST00000528778		TCGA	LD	ACC	TCGA-PA-A5YG-01A	KCNQ1	chr11	2799267	+	DUSP8	chr11	1587164	-
5CDS-3UTR	ENST00000321685	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321685	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321685	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321685	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321685	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321685	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321685	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321685	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-3UTR	ENST00000355040	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-3UTR	ENST00000355040	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-3UTR	ENST00000355040	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-3UTR	ENST00000355040	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-intron	ENST00000355040	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-intron	ENST00000355040	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-intron	ENST00000355040	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-intron	ENST00000355040	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321460	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321460	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321460	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-3UTR	ENST00000321460	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321460	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321460	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321460	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
5CDS-intron	ENST00000321460	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	DNAJC4	chr11	63999949	+	IGF2	chr11	2152928	-
intron-3UTR	ENST00000318083	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000318083	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000318083	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000318083	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000318083	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000318083	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000318083	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000318083	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000356751	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000356751	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000356751	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000356751	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000356751	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000356751	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000356751	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000356751	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000594582	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000594582	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000594582	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000594582	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000594582	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000594582	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000594582	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000594582	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000377367	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000377367	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000377367	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000377367	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000377367	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000377367	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000377367	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000377367	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000419611	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000419611	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000419611	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000419611	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000419611	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000419611	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000419611	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-intron	ENST00000419611	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H8-01A	MAMSTR	chr19	49219089	-	IGF2	chr11	2152930	-
intron-3UTR	ENST00000359373	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000359373	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000359373	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000359373	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000359373	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000359373	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000359373	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000359373	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000495878	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000495878	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000495878	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000495878	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000495878	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000495878	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000495878	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000495878	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000455638	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000455638	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000455638	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000455638	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000455638	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000455638	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000455638	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000455638	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393605	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393605	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393605	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393605	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393605	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393605	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393605	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393605	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000334211	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000334211	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000334211	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000334211	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000334211	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000334211	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000334211	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000334211	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393609	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393609	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393609	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000393609	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393609	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393609	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393609	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000393609	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000426523	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000426523	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000426523	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000426523	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000426523	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000426523	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000426523	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000426523	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000429686	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000429686	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000429686	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-3UTR	ENST00000429686	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000429686	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000429686	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000429686	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
intron-intron	ENST00000429686	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	ARAP1	chr11	72433110	-	IGF2	chr11	2153336	-
5CDS-intron	ENST00000538975	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000538975	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-5UTR	ENST00000538975	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000538975	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000538975	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000538975	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000538975	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000538975	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-5UTR	ENST00000435359	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000435359	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-5UTR	ENST00000570628	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-intron	ENST00000570628	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	CLUH	chr17	2592680	-	IGF2	chr11	2160438	-
5CDS-3UTR	ENST00000543760	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000543760	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000543760	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000543760	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000543760	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000543760	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000543760	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000543760	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000366672	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000366672	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000366672	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000366672	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000366672	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000366672	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000366672	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000366672	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000541865	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000541865	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000541865	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-3UTR	ENST00000541865	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000541865	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000541865	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000541865	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
5CDS-intron	ENST00000541865	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-3UTR	ENST00000485438	ENST00000381395		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-3UTR	ENST00000485438	ENST00000381406		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-3UTR	ENST00000485438	ENST00000416167		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-3UTR	ENST00000485438	ENST00000300632		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-intron	ENST00000485438	ENST00000434045		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-intron	ENST00000485438	ENST00000381392		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-intron	ENST00000485438	ENST00000381389		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
intron-intron	ENST00000485438	ENST00000418738		TCGA	LD	ACC	TCGA-PK-A5H9-01A	GALNT2	chr1	230391049	+	IGF2	chr11	2152990	-
Frame-shit	ENST00000265594	ENST00000265598		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000265594	ENST00000466939		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000265594	ENST00000486686		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
Frame-shit	ENST00000492597	ENST00000265598		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000492597	ENST00000466939		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000492597	ENST00000486686		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-3CDS	ENST00000539926	ENST00000265598		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-5UTR	ENST00000539926	ENST00000466939		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-intron	ENST00000539926	ENST00000486686		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-3CDS	ENST00000489909	ENST00000265598		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-5UTR	ENST00000489909	ENST00000466939		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-intron	ENST00000489909	ENST00000486686		TCGA	LD	ACC	TCGA-PK-A5HA-01A	MCCC1	chr3	182804481	-	LAMP3	chr3	182872179	-
intron-3CDS	ENST00000381885	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000381885	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000381885	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000396923	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000396923	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000396923	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000360301	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000360301	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000360301	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000360135	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000360135	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000360135	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000334933	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000334933	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000334933	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000420765	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000420765	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000420765	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000381879	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000381879	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000381879	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000348806	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000348806	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000348806	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000432870	ENST00000417257		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000432870	ENST00000402883		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
intron-3CDS	ENST00000432870	ENST00000484674		TCGA	LD	ACC	TCGA-PK-A5HA-01A	PPIP5K1	chr15	43827172	-	FRMD5	chr15	44181070	-
Frame-shit	ENST00000341697	ENST00000354473		TCGA	LD	ACC	TCGA-PK-A5HA-01A	SEMA6C	chr1	151112452	-	VPS72	chr1	151158426	-
5CDS-5UTR	ENST00000341697	ENST00000496809		TCGA	LD	ACC	TCGA-PK-A5HA-01A	SEMA6C	chr1	151112452	-	VPS72	chr1	151158426	-
intron-3CDS	ENST00000479820	ENST00000354473		TCGA	LD	ACC	TCGA-PK-A5HA-01A	SEMA6C	chr1	151112452	-	VPS72	chr1	151158426	-
intron-5UTR	ENST00000479820	ENST00000496809		TCGA	LD	ACC	TCGA-PK-A5HA-01A	SEMA6C	chr1	151112452	-	VPS72	chr1	151158426	-
intron-intron	ENST00000455600	ENST00000427876		TCGA	LD	ACC	TCGA-PK-A5HB-01A	RUSC2	chr9	35490169	+	U82695.5	chrX	152664378	-
intron-intron	ENST00000468041	ENST00000427876		TCGA	LD	ACC	TCGA-PK-A5HB-01A	RUSC2	chr9	35490169	+	U82695.5	chrX	152664378	-
intron-5UTR	ENST00000393483	ENST00000412849		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000393483	ENST00000401392		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000393483	ENST00000264159		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000393483	ENST00000536680		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000410001	ENST00000412849		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000410001	ENST00000401392		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000410001	ENST00000264159		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000410001	ENST00000536680		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000355053	ENST00000412849		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000355053	ENST00000401392		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000355053	ENST00000264159		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000355053	ENST00000536680		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000539964	ENST00000412849		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000539964	ENST00000401392		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000539964	ENST00000264159		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000539964	ENST00000536680		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000542655	ENST00000412849		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000542655	ENST00000401392		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000542655	ENST00000264159		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000542655	ENST00000536680		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000478090	ENST00000412849		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000478090	ENST00000401392		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000478090	ENST00000264159		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
intron-5UTR	ENST00000478090	ENST00000536680		TCGA	LD	ACC	TCGA-PK-A5HB-01A	TSGA10	chr2	99771300	-	ZRANB3	chr2	135982087	-
Frame-shit	ENST00000464611	ENST00000371477		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	ACTB	chr7	5566782	-	CDC5L	chr6	44374060	+
Frame-shit	ENST00000331789	ENST00000371477		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	ACTB	chr7	5566782	-	CDC5L	chr6	44374060	+
In-frame	ENST00000338316	ENST00000610020		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	ADCY2	chr5	7698487	+	RPAP2	chr1	92846281	+
5CDS-intron	ENST00000338316	ENST00000484158		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	ADCY2	chr5	7698487	+	RPAP2	chr1	92846281	+
In-frame	ENST00000537121	ENST00000610020		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	ADCY2	chr5	7698487	+	RPAP2	chr1	92846281	+
5CDS-intron	ENST00000537121	ENST00000484158		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	ADCY2	chr5	7698487	+	RPAP2	chr1	92846281	+
intron-3CDS	ENST00000513693	ENST00000610020		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	ADCY2	chr5	7698487	+	RPAP2	chr1	92846281	+
intron-intron	ENST00000513693	ENST00000484158		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	ADCY2	chr5	7698487	+	RPAP2	chr1	92846281	+
intron-3CDS	ENST00000395146	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000395146	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000395146	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000395146	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000395146	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000395146	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
Frame-shit	ENST00000307808	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
Frame-shit	ENST00000307808	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-3CDS	ENST00000544085	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-3CDS	ENST00000544085	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-intron	ENST00000544085	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-intron	ENST00000544085	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-intron	ENST00000544085	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-intron	ENST00000544085	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000511996	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000511996	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	AFF1	chr4	87928576	+	PTPN13	chr4	87718027	+
5UTR-3CDS	ENST00000338110	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000338110	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000338110	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000338110	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-intron	ENST00000338110	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000395248	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000395248	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000395248	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000395248	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-intron	ENST00000395248	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000575627	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000575627	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000575627	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000575627	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000575627	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000566897	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000566897	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000566897	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-3CDS	ENST00000566897	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
5UTR-intron	ENST00000566897	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569545	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569545	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569545	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569545	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000569545	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000563060	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000563060	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000563060	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000563060	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000563060	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000412304	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000412304	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000412304	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000412304	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000412304	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564546	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564546	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564546	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564546	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000564546	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564595	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564595	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564595	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000564595	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000564595	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569798	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569798	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569798	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000569798	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000569798	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000395240	ENST00000521022		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000395240	ENST00000416984		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000395240	ENST00000521777		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000395240	ENST00000397363		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-intron	ENST00000395240	ENST00000521070		TCGA	RV	BLCA	TCGA-FD-A62S-01A	ALDOA	chr16	30066648	+	INTS9	chr8	28627543	-
intron-3CDS	ENST00000487917	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
intron-3CDS	ENST00000487917	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
intron-3CDS	ENST00000487917	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
intron-intron	ENST00000487917	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
intron-intron	ENST00000487917	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
intron-intron	ENST00000487917	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
intron-intron	ENST00000487917	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
Frame-shit	ENST00000323927	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
Frame-shit	ENST00000323927	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
Frame-shit	ENST00000323927	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000323927	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000323927	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000323927	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000323927	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A40G-01A	ANAPC2	chr9	140081933	-	EYS	chr6	65767620	-
5UTR-5UTR	ENST00000378330	ENST00000543304		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000378330	ENST00000334805		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000378330	ENST00000538536		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-intron	ENST00000378330	ENST00000538437		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000378330	ENST00000545082		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000301030	ENST00000543304		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000301030	ENST00000334805		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000301030	ENST00000538536		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-intron	ENST00000301030	ENST00000538437		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
5UTR-5UTR	ENST00000301030	ENST00000545082		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000563291	ENST00000543304		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000563291	ENST00000334805		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000563291	ENST00000538536		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-intron	ENST00000563291	ENST00000538437		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000563291	ENST00000545082		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000567736	ENST00000543304		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000567736	ENST00000334805		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000567736	ENST00000538536		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-intron	ENST00000567736	ENST00000538437		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-5UTR	ENST00000567736	ENST00000545082		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	ANKRD11	chr16	89484692	-	STARD10	chr11	72492339	-
intron-3CDS	ENST00000418066	ENST00000377938		TCGA	RV	BLCA	TCGA-DK-AA75-01A	ANXA4	chr2	70008706	+	GKN1	chr2	69204627	+
In-frame	ENST00000409920	ENST00000377938		TCGA	RV	BLCA	TCGA-DK-AA75-01A	ANXA4	chr2	70008706	+	GKN1	chr2	69204627	+
In-frame	ENST00000394295	ENST00000377938		TCGA	RV	BLCA	TCGA-DK-AA75-01A	ANXA4	chr2	70008706	+	GKN1	chr2	69204627	+
5UTR-3CDS	ENST00000536030	ENST00000377938		TCGA	RV	BLCA	TCGA-DK-AA75-01A	ANXA4	chr2	70008706	+	GKN1	chr2	69204627	+
Frame-shit	ENST00000334344	ENST00000323108		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
Frame-shit	ENST00000334344	ENST00000288390		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
In-frame	ENST00000422737	ENST00000323108		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
In-frame	ENST00000422737	ENST00000288390		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
3UTR-3CDS	ENST00000479608	ENST00000323108		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
3UTR-3CDS	ENST00000479608	ENST00000288390		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
Frame-shit	ENST00000444670	ENST00000323108		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
Frame-shit	ENST00000444670	ENST00000288390		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
Frame-shit	ENST00000457135	ENST00000323108		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
Frame-shit	ENST00000457135	ENST00000288390		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	ARID2	chr12	46287504	+	SPATS1	chr6	44336116	+
Frame-shit	ENST00000397498	ENST00000398519		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000397498	ENST00000314028		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
In-frame	ENST00000397498	ENST00000392334		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000397498	ENST00000578904		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000573392	ENST00000398519		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000573392	ENST00000314028		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000573392	ENST00000392334		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-intron	ENST00000573392	ENST00000578904		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000574938	ENST00000398519		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000574938	ENST00000314028		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000574938	ENST00000392334		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-intron	ENST00000574938	ENST00000578904		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000570561	ENST00000398519		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000570561	ENST00000314028		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000570561	ENST00000392334		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5UTR-intron	ENST00000570561	ENST00000578904		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000576135	ENST00000398519		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000576135	ENST00000314028		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000576135	ENST00000392334		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
intron-intron	ENST00000576135	ENST00000578904		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	ARL16	chr17	79650566	-	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000541428	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000541428	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000541428	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000541428	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000541428	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000379454	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000379454	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000379454	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000379454	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-5UTR	ENST00000523897	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-5UTR	ENST00000523897	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-5UTR	ENST00000523897	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5UTR-intron	ENST00000523897	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000522919	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000522919	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000522919	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000522919	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000356457	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000356457	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000356457	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000356457	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000518068	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000518068	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000518068	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000518068	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517903	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517903	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517903	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517903	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000445642	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000445642	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000445642	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000445642	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517847	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517847	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517847	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517847	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000522835	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000522835	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000522835	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522835	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517856	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517856	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517856	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517856	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000389204	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000389204	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000389204	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000389204	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000522603	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000522603	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000522603	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000522603	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000379449	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000379449	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000379449	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000379449	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000519416		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000520615		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517661	ENST00000443286		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517661	ENST00000520340		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000517661	ENST00000518415		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000522752		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000348567		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000330691		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000317827		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000379931		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000276520		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000520973		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
intron-intron	ENST00000517661	ENST00000520611		TCGA	RV	BLCA	TCGA-YC-A89H-01A	ASPH	chr8	62531537	-	TACC1	chr8	38599869	+
In-frame	ENST00000446450	ENST00000476844		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
In-frame	ENST00000446450	ENST00000492590		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000446450	ENST00000466788		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000446450	ENST00000468189		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000446450	ENST00000341848		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
In-frame	ENST00000354956	ENST00000476844		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
In-frame	ENST00000354956	ENST00000492590		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000354956	ENST00000466788		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000354956	ENST00000468189		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000354956	ENST00000341848		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
In-frame	ENST00000354449	ENST00000476844		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
In-frame	ENST00000354449	ENST00000492590		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000354449	ENST00000466788		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000354449	ENST00000468189		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000354449	ENST00000341848		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
intron-3CDS	ENST00000469654	ENST00000476844		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
intron-3CDS	ENST00000469654	ENST00000492590		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
intron-5UTR	ENST00000469654	ENST00000466788		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
intron-5UTR	ENST00000469654	ENST00000468189		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
intron-5UTR	ENST00000469654	ENST00000341848		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ATG7	chr3	11406208	+	FHIT	chr3	59908140	-
In-frame	ENST00000366600	ENST00000389794		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
In-frame	ENST00000366600	ENST00000389793		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5CDS-intron	ENST00000366600	ENST00000536965		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5CDS-5UTR	ENST00000366600	ENST00000473037		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
In-frame	ENST00000313984	ENST00000389794		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
In-frame	ENST00000313984	ENST00000389793		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5CDS-intron	ENST00000313984	ENST00000536965		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5CDS-5UTR	ENST00000313984	ENST00000473037		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5UTR-3CDS	ENST00000494378	ENST00000389794		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5UTR-3CDS	ENST00000494378	ENST00000389793		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5UTR-intron	ENST00000494378	ENST00000536965		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
5UTR-5UTR	ENST00000494378	ENST00000473037		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	B3GALNT2	chr1	235647638	-	LYST	chr1	235850347	-
intron-3CDS	ENST00000417172	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000417172	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000417172	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000417172	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000417172	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000417172	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000361388	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000361388	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361388	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361388	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361388	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361388	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000422748	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000422748	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000422748	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000422748	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000422748	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000422748	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000361675	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000361675	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361675	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361675	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361675	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361675	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000361901	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-3CDS	ENST00000361901	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361901	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361901	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361901	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5UTR-intron	ENST00000361901	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000393118	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000393118	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000393118	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000393118	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000393118	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000393118	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000495522	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000495522	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000495522	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000495522	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000495522	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000495522	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000424922	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000424922	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000424922	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000424922	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000424922	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000424922	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000543443	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000543443	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000543443	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000543443	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000543443	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000543443	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000466704	ENST00000253861		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000466704	ENST00000539845		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000466704	ENST00000393161		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000466704	ENST00000545148		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000466704	ENST00000460346		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
intron-intron	ENST00000466704	ENST00000541309		TCGA	RV	BLCA	TCGA-GV-A40E-01A	CALD1	chr7	134464500	+	EXOC4	chr7	133749044	+
5CDS-5UTR	ENST00000261900	ENST00000357869		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCNT1	chr12	49094796	-	ADCY6	chr12	49177221	-
5CDS-5UTR	ENST00000261900	ENST00000550422		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCNT1	chr12	49094796	-	ADCY6	chr12	49177221	-
5CDS-5UTR	ENST00000261900	ENST00000307885		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCNT1	chr12	49094796	-	ADCY6	chr12	49177221	-
5CDS-intron	ENST00000261900	ENST00000552090		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCNT1	chr12	49094796	-	ADCY6	chr12	49177221	-
5CDS-5UTR	ENST00000295887	ENST00000373424		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234602445	+
5CDS-3UTR	ENST00000295887	ENST00000480628		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234602445	+
5CDS-3UTR	ENST00000295887	ENST00000305139		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234602445	+
5CDS-5UTR	ENST00000295887	ENST00000406651		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234602445	+
In-frame	ENST00000367607	ENST00000528443		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
In-frame	ENST00000367607	ENST00000271583		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
In-frame	ENST00000367607	ENST00000606911		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
In-frame	ENST00000367607	ENST00000435319		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
5CDS-3UTR	ENST00000367607	ENST00000474875		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000528443		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000271583		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000606911		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000435319		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
intron-3UTR	ENST00000490141	ENST00000474875		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CEP350	chr1	179966310	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000554411	ENST00000310677		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
Frame-shit	ENST00000554411	ENST00000554068		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
Frame-shit	ENST00000554411	ENST00000418030		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
5CDS-intron	ENST00000554411	ENST00000396747		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
5CDS-intron	ENST00000554411	ENST00000558563		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
In-frame	ENST00000336557	ENST00000310677		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
In-frame	ENST00000336557	ENST00000554068		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
In-frame	ENST00000336557	ENST00000418030		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
5CDS-intron	ENST00000336557	ENST00000396747		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
5CDS-intron	ENST00000336557	ENST00000558563		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
Frame-shit	ENST00000258807	ENST00000310677		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
Frame-shit	ENST00000258807	ENST00000554068		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
Frame-shit	ENST00000258807	ENST00000418030		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
5CDS-intron	ENST00000258807	ENST00000396747		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
5CDS-intron	ENST00000258807	ENST00000558563		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
intron-3CDS	ENST00000555817	ENST00000310677		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
intron-3CDS	ENST00000555817	ENST00000554068		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
intron-3CDS	ENST00000555817	ENST00000418030		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
intron-intron	ENST00000555817	ENST00000396747		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
intron-intron	ENST00000555817	ENST00000558563		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	CIDEB	chr14	24776577	-	ADCY4	chr14	24787984	-
Frame-shit	ENST00000262207	ENST00000284818		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
Frame-shit	ENST00000262207	ENST00000518893		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
intron-3CDS	ENST00000519798	ENST00000284818		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
intron-3CDS	ENST00000519798	ENST00000518893		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
Frame-shit	ENST00000523524	ENST00000284818		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
Frame-shit	ENST00000523524	ENST00000518893		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
intron-3CDS	ENST00000517786	ENST00000284818		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
intron-3CDS	ENST00000517786	ENST00000518893		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	CRISPLD1	chr8	75926337	+	LY96	chr8	74922236	+
Frame-shit	ENST00000273009	ENST00000349938		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
5CDS-3UTR	ENST00000273009	ENST00000483477		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
Frame-shit	ENST00000360410	ENST00000349938		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
5CDS-3UTR	ENST00000360410	ENST00000483477		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
Frame-shit	ENST00000325385	ENST00000349938		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
5CDS-3UTR	ENST00000325385	ENST00000483477		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
Frame-shit	ENST00000409401	ENST00000349938		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
5CDS-3UTR	ENST00000409401	ENST00000483477		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
Frame-shit	ENST00000409307	ENST00000349938		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
5CDS-3UTR	ENST00000409307	ENST00000483477		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
3UTR-3CDS	ENST00000470087	ENST00000349938		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
3UTR-3UTR	ENST00000470087	ENST00000483477		TCGA	RV	BLCA	TCGA-K4-A83P-01A	DIS3L2	chr2	232894790	+	ARMC9	chr2	232160911	+
intron-3CDS	ENST00000465508	ENST00000336861		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000465508	ENST00000246635		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-5UTR	ENST00000465508	ENST00000587544		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-intron	ENST00000465508	ENST00000587118		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000349363	ENST00000336861		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000349363	ENST00000246635		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-5UTR	ENST00000349363	ENST00000587544		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-intron	ENST00000349363	ENST00000587118		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000377577	ENST00000336861		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000377577	ENST00000246635		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-5UTR	ENST00000377577	ENST00000587544		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-intron	ENST00000377577	ENST00000587118		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000294401	ENST00000336861		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000294401	ENST00000246635		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-5UTR	ENST00000294401	ENST00000587544		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-intron	ENST00000294401	ENST00000587118		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000542246	ENST00000336861		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-3CDS	ENST00000542246	ENST00000246635		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-5UTR	ENST00000542246	ENST00000587544		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
intron-intron	ENST00000542246	ENST00000587118		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
Frame-shit	ENST00000377573	ENST00000336861		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
Frame-shit	ENST00000377573	ENST00000246635		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
5CDS-5UTR	ENST00000377573	ENST00000587544		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
5CDS-intron	ENST00000377573	ENST00000587118		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	DNAJC11	chr1	6695551	-	KRT13	chr17	39661849	-
5CDS-intron	ENST00000333274	ENST00000302475		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000333274	ENST00000514701		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000333274	ENST00000515367		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000333274	ENST00000408903		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000509503	ENST00000302475		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000509503	ENST00000514701		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000509503	ENST00000515367		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
5CDS-intron	ENST00000509503	ENST00000408903		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
intron-intron	ENST00000510359	ENST00000302475		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
intron-intron	ENST00000510359	ENST00000514701		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
intron-intron	ENST00000510359	ENST00000515367		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
intron-intron	ENST00000510359	ENST00000408903		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	EFNA5	chr5	107006190	-	MCC	chr5	112720909	-
In-frame	ENST00000405454	ENST00000565488		TCGA	RV	BLCA	TCGA-BL-A13J-01A	FAM102B	chr1	109143308	+	SLC25A24	chr1	108728576	-
In-frame	ENST00000405454	ENST00000370041		TCGA	RV	BLCA	TCGA-BL-A13J-01A	FAM102B	chr1	109143308	+	SLC25A24	chr1	108728576	-
5CDS-intron	ENST00000405454	ENST00000569674		TCGA	RV	BLCA	TCGA-BL-A13J-01A	FAM102B	chr1	109143308	+	SLC25A24	chr1	108728576	-
In-frame	ENST00000370035	ENST00000565488		TCGA	RV	BLCA	TCGA-BL-A13J-01A	FAM102B	chr1	109143308	+	SLC25A24	chr1	108728576	-
In-frame	ENST00000370035	ENST00000370041		TCGA	RV	BLCA	TCGA-BL-A13J-01A	FAM102B	chr1	109143308	+	SLC25A24	chr1	108728576	-
5CDS-intron	ENST00000370035	ENST00000569674		TCGA	RV	BLCA	TCGA-BL-A13J-01A	FAM102B	chr1	109143308	+	SLC25A24	chr1	108728576	-
5CDS-5UTR	ENST00000510496	ENST00000504022		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
5CDS-5UTR	ENST00000510496	ENST00000274361		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
5CDS-5UTR	ENST00000510496	ENST00000506364		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
5CDS-5UTR	ENST00000389156	ENST00000504022		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
5CDS-5UTR	ENST00000389156	ENST00000274361		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
5CDS-5UTR	ENST00000389156	ENST00000506364		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
intron-5UTR	ENST00000380515	ENST00000504022		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
intron-5UTR	ENST00000380515	ENST00000274361		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
intron-5UTR	ENST00000380515	ENST00000506364		TCGA	RV	BLCA	TCGA-BT-A20W-01A	FAM169A	chr5	74130251	-	ANKRD31	chr5	74364489	-
intron-3CDS	ENST00000539068	ENST00000230340		TCGA	RV	BLCA	TCGA-KQ-A41S-01A	FKBP5	chr6	35656581	-	BYSL	chr6	41897870	+
intron-3CDS	ENST00000536438	ENST00000230340		TCGA	RV	BLCA	TCGA-KQ-A41S-01A	FKBP5	chr6	35656581	-	BYSL	chr6	41897870	+
5UTR-3CDS	ENST00000357266	ENST00000230340		TCGA	RV	BLCA	TCGA-KQ-A41S-01A	FKBP5	chr6	35656581	-	BYSL	chr6	41897870	+
5UTR-3CDS	ENST00000540787	ENST00000230340		TCGA	RV	BLCA	TCGA-KQ-A41S-01A	FKBP5	chr6	35656581	-	BYSL	chr6	41897870	+
5UTR-3CDS	ENST00000542713	ENST00000230340		TCGA	RV	BLCA	TCGA-KQ-A41S-01A	FKBP5	chr6	35656581	-	BYSL	chr6	41897870	+
Frame-shit	ENST00000490882	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000490882	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
Frame-shit	ENST00000429972	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000429972	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
Frame-shit	ENST00000295956	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000295956	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
Frame-shit	ENST00000358537	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000358537	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
Frame-shit	ENST00000357272	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000357272	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
Frame-shit	ENST00000348383	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
5CDS-intron	ENST00000348383	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-3CDS	ENST00000493452	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000493452	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-3CDS	ENST00000419752	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000419752	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-3CDS	ENST00000484981	ENST00000295951		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000416870		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000295952		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000383718		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000428312		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000449503		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000472546		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000442599		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000495364		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000484981	ENST00000494088		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57908616	+
intron-intron	ENST00000421182	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000421182	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000421182	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000421182	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000357867	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000357867	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000357867	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000357867	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000323926	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000323926	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000323926	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000323926	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000336916	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000336916	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000336916	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000336916	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000354785	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000354785	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000354785	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000354785	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000357009	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000357009	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000357009	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000357009	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000346544	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000346544	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000346544	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000346544	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000345488	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000345488	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000345488	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000345488	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000359671	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000359671	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000359671	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000359671	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000446046	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000446046	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000446046	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000446046	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000443816	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000443816	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000443816	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000443816	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000432072	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000432072	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000432072	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000432072	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000356005	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000356005	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000356005	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000356005	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000490833	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000490833	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000490833	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000490833	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000426059	ENST00000371754		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000426059	ENST00000469991		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000426059	ENST00000371752		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000426059	ENST00000396105		TCGA	RV	BLCA	TCGA-BT-A20O-01A	FN1	chr2	216225181	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000253462	ENST00000602758		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
5CDS-5UTR	ENST00000253462	ENST00000602719		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
5CDS-intron	ENST00000253462	ENST00000602583		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
5CDS-5UTR	ENST00000253462	ENST00000602675		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
5CDS-5UTR	ENST00000253462	ENST00000284245		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
5CDS-5UTR	ENST00000253462	ENST00000602914		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
5CDS-5UTR	ENST00000253462	ENST00000602766		TCGA	RV	BLCA	TCGA-E7-A541-01A	GINS2	chr16	85722415	-	C16orf74	chr16	85768841	-
Frame-shit	ENST00000309156	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000309156	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000309156	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000309185	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000309185	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000309185	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394211	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394211	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394211	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
intron-3CDS	ENST00000578702	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
intron-3CDS	ENST00000578702	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
intron-3CDS	ENST00000578702	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000445327	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000445327	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000445327	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394209	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394209	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394209	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394204	ENST00000392619		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394204	ENST00000426295		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
Frame-shit	ENST00000394204	ENST00000328630		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	GRB7	chr17	37901237	+	CD300E	chr17	72610172	-
3UTR-intron	ENST00000373823	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373823	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373808	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000436847	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000449733	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000412819	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000394353	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000341272	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000545652	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
3UTR-intron	ENST00000373818	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000485767	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373807	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000532636		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000533540		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000453788		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000534624		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000227378		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000534319		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000526110		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
intron-intron	ENST00000373806	ENST00000526862		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	GSN	chr9	124095016	+	HSPA8	chr11	122933938	-
Frame-shit	ENST00000380649	ENST00000264711		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
Frame-shit	ENST00000380649	ENST00000534855		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
5CDS-intron	ENST00000380649	ENST00000468467		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
5UTR-3CDS	ENST00000457468	ENST00000264711		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
5UTR-3CDS	ENST00000457468	ENST00000534855		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
5UTR-intron	ENST00000457468	ENST00000468467		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
intron-3CDS	ENST00000461025	ENST00000264711		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
intron-3CDS	ENST00000461025	ENST00000534855		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
intron-intron	ENST00000461025	ENST00000468467		TCGA	RV	BLCA	TCGA-E7-A3X6-01A	HADHA	chr2	26467398	-	DNAJC27	chr2	25170617	-
In-frame	ENST00000253669	ENST00000380525		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
In-frame	ENST00000253669	ENST00000397111		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
In-frame	ENST00000253669	ENST00000278224		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5CDS-intron	ENST00000253669	ENST00000470221		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5CDS-intron	ENST00000253669	ENST00000401769		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5CDS-intron	ENST00000253669	ENST00000397114		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
In-frame	ENST00000448593	ENST00000380525		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
In-frame	ENST00000448593	ENST00000397111		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
In-frame	ENST00000448593	ENST00000278224		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5CDS-intron	ENST00000448593	ENST00000470221		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5CDS-intron	ENST00000448593	ENST00000401769		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5CDS-intron	ENST00000448593	ENST00000397114		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5UTR-3CDS	ENST00000593360	ENST00000380525		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5UTR-3CDS	ENST00000593360	ENST00000397111		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5UTR-3CDS	ENST00000593360	ENST00000278224		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5UTR-intron	ENST00000593360	ENST00000470221		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5UTR-intron	ENST00000593360	ENST00000401769		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
5UTR-intron	ENST00000593360	ENST00000397114		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	HAUS8	chr19	17179841	-	CARS	chr11	3040497	-
In-frame	ENST00000345617	ENST00000417098		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
5CDS-intron	ENST00000345617	ENST00000443023		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
5CDS-intron	ENST00000345617	ENST00000260926		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
5CDS-intron	ENST00000345617	ENST00000428695		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
5CDS-intron	ENST00000345617	ENST00000457245		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
5CDS-intron	ENST00000345617	ENST00000484124		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-3CDS	ENST00000543185	ENST00000417098		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000543185	ENST00000443023		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000543185	ENST00000260926		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000543185	ENST00000428695		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000543185	ENST00000457245		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000543185	ENST00000484124		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-3CDS	ENST00000541256	ENST00000417098		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000541256	ENST00000443023		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000541256	ENST00000260926		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000541256	ENST00000428695		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000541256	ENST00000457245		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000541256	ENST00000484124		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-3CDS	ENST00000553145	ENST00000417098		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000553145	ENST00000443023		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000553145	ENST00000260926		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000553145	ENST00000428695		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000553145	ENST00000457245		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
intron-intron	ENST00000553145	ENST00000484124		TCGA	RV	BLCA	TCGA-BL-A13J-01A	HDAC4	chr2	240158289	-	SATB2	chr2	200298237	-
In-frame	ENST00000341776	ENST00000379388		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
5CDS-intron	ENST00000341776	ENST00000484210		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
5CDS-intron	ENST00000341776	ENST00000541134		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
In-frame	ENST00000397311	ENST00000379388		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
5CDS-intron	ENST00000397311	ENST00000484210		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
5CDS-intron	ENST00000397311	ENST00000541134		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
In-frame	ENST00000541660	ENST00000379388		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
5CDS-intron	ENST00000541660	ENST00000484210		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
5CDS-intron	ENST00000541660	ENST00000541134		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
3UTR-3CDS	ENST00000474854	ENST00000379388		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
3UTR-intron	ENST00000474854	ENST00000484210		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
3UTR-intron	ENST00000474854	ENST00000541134		TCGA	RV	BLCA	TCGA-DK-AA76-01A	JARID2	chr6	15501640	+	HIVEP1	chr6	12129992	+
Frame-shit	ENST00000341776	ENST00000382080		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
Frame-shit	ENST00000341776	ENST00000421524		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000397311	ENST00000382080		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000397311	ENST00000421524		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000541660	ENST00000382080		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000541660	ENST00000421524		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000474854	ENST00000382080		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000474854	ENST00000421524		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	JARID2	chr6	15246815	+	SGCZ	chr8	14022211	-
intron-3CDS	ENST00000382303	ENST00000379540		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000382303	ENST00000379521		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000382303	ENST00000318524		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-intron	ENST00000382303	ENST00000463421		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000489369	ENST00000379540		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000489369	ENST00000379521		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000489369	ENST00000318524		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-intron	ENST00000489369	ENST00000463421		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000382297	ENST00000379540		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000382297	ENST00000379521		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000382297	ENST00000318524		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
intron-intron	ENST00000382297	ENST00000463421		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000382293	ENST00000379540		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000382293	ENST00000379521		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000382293	ENST00000318524		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
5UTR-intron	ENST00000382293	ENST00000463421		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KANK1	chr9	707247	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000373731	ENST00000339796		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000373731	ENST00000373737		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000373731	ENST00000340181		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000373731	ENST00000373738		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000373731	ENST00000538992		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
3UTR-3CDS	ENST00000474988	ENST00000339796		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
3UTR-intron	ENST00000474988	ENST00000373737		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
3UTR-intron	ENST00000474988	ENST00000340181		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
3UTR-intron	ENST00000474988	ENST00000373738		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
3UTR-intron	ENST00000474988	ENST00000538992		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-3CDS	ENST00000544295	ENST00000339796		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000544295	ENST00000373737		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000544295	ENST00000340181		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000544295	ENST00000373738		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000544295	ENST00000538992		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-3CDS	ENST00000449081	ENST00000339796		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000449081	ENST00000373737		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000449081	ENST00000340181		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000449081	ENST00000373738		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000449081	ENST00000538992		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-3CDS	ENST00000536244	ENST00000339796		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000536244	ENST00000373737		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000536244	ENST00000340181		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000536244	ENST00000373738		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
5UTR-intron	ENST00000536244	ENST00000538992		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	KCTD20	chr6	36410888	+	ETV7	chr6	36322464	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	BLCA	TCGA-ZF-AA53-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000261425	ENST00000306888		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
5UTR-3CDS	ENST00000261425	ENST00000263925		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
5UTR-intron	ENST00000261425	ENST00000504605		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
5UTR-3CDS	ENST00000508137	ENST00000306888		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
5UTR-3CDS	ENST00000508137	ENST00000263925		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
5UTR-intron	ENST00000508137	ENST00000504605		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000504108	ENST00000306888		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000504108	ENST00000263925		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-intron	ENST00000504108	ENST00000504605		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000359687	ENST00000306888		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000359687	ENST00000263925		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-intron	ENST00000359687	ENST00000504605		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000381930	ENST00000306888		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000381930	ENST00000263925		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-intron	ENST00000381930	ENST00000504605		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000261426	ENST00000306888		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-3CDS	ENST00000261426	ENST00000263925		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
intron-intron	ENST00000261426	ENST00000504605		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	KLHL5	chr4	39046716	+	LNX1	chr4	54374394	-
5CDS-5UTR	ENST00000334256	ENST00000381196		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000360074		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000537002		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000397617		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000358503		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000397611		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000355233		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000356435		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000540109		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000486161		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000397606		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-5UTR	ENST00000334256	ENST00000463477		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5CDS-intron	ENST00000334256	ENST00000471274		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-5UTR	ENST00000469804	ENST00000381196		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000360074		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000537002		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000397617		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000358503		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000397611		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000355233		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000356435		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000540109		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000486161		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000397606		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-5UTR	ENST00000469804	ENST00000463477		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-intron	ENST00000469804	ENST00000471274		TCGA	RV	BLCA	TCGA-FD-A6TF-01A	KPNA4	chr3	160283002	-	PTPRD	chr9	9574781	-
5UTR-3CDS	ENST00000395309	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000395309	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000413890	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000413890	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000438792	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000438792	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000395314	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000395314	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000395308	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-3CDS	ENST00000395308	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000395311	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000395311	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000416613	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000416613	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000554507	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000554507	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000555573	ENST00000374139		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
intron-3CDS	ENST00000555573	ENST00000434016		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KTN1	chr14	56047072	+	DRGX	chr10	50594904	-
5UTR-5UTR	ENST00000529410	ENST00000358220		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000529410	ENST00000381329		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000529410	ENST00000263150		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-intron	ENST00000529410	ENST00000482165		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000533560	ENST00000358220		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000533560	ENST00000381329		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000533560	ENST00000263150		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-intron	ENST00000533560	ENST00000482165		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000361794	ENST00000358220		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000361794	ENST00000381329		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000361794	ENST00000263150		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-intron	ENST00000361794	ENST00000482165		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
intron-5UTR	ENST00000368139	ENST00000358220		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
intron-5UTR	ENST00000368139	ENST00000381329		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
intron-5UTR	ENST00000368139	ENST00000263150		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
intron-intron	ENST00000368139	ENST00000482165		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000526019	ENST00000358220		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000526019	ENST00000381329		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000526019	ENST00000263150		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-intron	ENST00000526019	ENST00000482165		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000368136	ENST00000358220		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000368136	ENST00000381329		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-5UTR	ENST00000368136	ENST00000263150		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5UTR-intron	ENST00000368136	ENST00000482165		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	L3MBTL3	chr6	130343450	+	WDR37	chr10	1118056	+
5CDS-5UTR	ENST00000337431	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000337431	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000337431	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000337431	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000337431	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000337431	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000354992	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000354992	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000354992	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000354992	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000354992	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000354992	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000397394	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000397394	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000397394	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000397394	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000397394	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000397394	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000402320	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000402320	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000402320	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000402320	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000402320	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000402320	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000452586	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000452586	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000452586	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000452586	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000452586	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000452586	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000437602	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000437602	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000437602	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-5UTR	ENST00000437602	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000437602	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5CDS-intron	ENST00000437602	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
intron-5UTR	ENST00000421232	ENST00000344710		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
intron-5UTR	ENST00000421232	ENST00000397525		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
intron-5UTR	ENST00000421232	ENST00000330125		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
intron-5UTR	ENST00000421232	ENST00000397523		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
intron-intron	ENST00000421232	ENST00000382180		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
intron-intron	ENST00000421232	ENST00000441289		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	LARGE	chr22	33960834	-	EIF4ENIF1	chr22	31884731	-
5UTR-3CDS	ENST00000337431	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
5UTR-3CDS	ENST00000354992	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
intron-3CDS	ENST00000397394	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
intron-3CDS	ENST00000402320	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
intron-3CDS	ENST00000452586	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
intron-3CDS	ENST00000437602	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
intron-3CDS	ENST00000421232	ENST00000266086		TCGA	RV	BLCA	TCGA-XF-AAN2-01A	LARGE	chr22	34252728	-	SLC5A4	chr22	32631080	-
5CDS-5UTR	ENST00000535741	ENST00000409598		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000535741	ENST00000424281		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000535741	ENST00000304527		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000535741	ENST00000455740		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000535741	ENST00000409252		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000535741	ENST00000514152		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-intron	ENST00000535741	ENST00000427414		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000535741	ENST00000604030		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000409598		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000424281		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000304527		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000455740		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000409252		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000514152		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-intron	ENST00000510413	ENST00000427414		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000510413	ENST00000604030		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000409598		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000424281		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000304527		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000455740		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000409252		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000514152		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-intron	ENST00000503716	ENST00000427414		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
intron-5UTR	ENST00000503716	ENST00000604030		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000409598		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000424281		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000304527		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000455740		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000409252		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000514152		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-intron	ENST00000357115	ENST00000427414		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000357115	ENST00000604030		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000409598		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000424281		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000304527		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000455740		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000409252		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000514152		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-intron	ENST00000507224	ENST00000427414		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
5CDS-5UTR	ENST00000507224	ENST00000604030		TCGA	RV	BLCA	TCGA-FD-A3B7-01A	LRBA	chr4	151842350	-	SH3D19	chr4	152096826	-
In-frame	ENST00000300417	ENST00000435213		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000300417	ENST00000314904		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000300417	ENST00000373387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
5CDS-intron	ENST00000300417	ENST00000496711		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000373324	ENST00000435213		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000373324	ENST00000314904		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000373324	ENST00000373387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
5CDS-intron	ENST00000373324	ENST00000496711		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000323301	ENST00000435213		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000323301	ENST00000314904		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000323301	ENST00000373387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
5CDS-intron	ENST00000323301	ENST00000496711		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000373322	ENST00000435213		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000373322	ENST00000314904		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
In-frame	ENST00000373322	ENST00000373387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
5CDS-intron	ENST00000373322	ENST00000496711		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
intron-3CDS	ENST00000483302	ENST00000435213		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
intron-3CDS	ENST00000483302	ENST00000314904		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
intron-3CDS	ENST00000483302	ENST00000373387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
intron-intron	ENST00000483302	ENST00000496711		TCGA	RV	BLCA	TCGA-E7-A85H-01A	LRSAM1	chr9	130224652	+	GARNL3	chr9	130073915	+
Frame-shit	ENST00000418342	ENST00000356462		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
Frame-shit	ENST00000418342	ENST00000400345		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000418342	ENST00000589054		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000256832		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000382850		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000256830		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000418342	ENST00000588516		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000456986		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000435432		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000357895		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000586263		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000456173		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000418342	ENST00000431212		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
Frame-shit	ENST00000302291	ENST00000356462		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
Frame-shit	ENST00000302291	ENST00000400345		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000302291	ENST00000589054		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000256832		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000382850		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000256830		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000302291	ENST00000588516		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000456986		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000435432		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000357895		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000586263		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000456173		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000302291	ENST00000431212		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
In-frame	ENST00000314174	ENST00000356462		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
In-frame	ENST00000314174	ENST00000400345		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000314174	ENST00000589054		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000256832		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000382850		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000256830		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000314174	ENST00000588516		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000456986		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000435432		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000357895		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000586263		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000456173		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000314174	ENST00000431212		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
Frame-shit	ENST00000374623	ENST00000356462		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
Frame-shit	ENST00000374623	ENST00000400345		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000374623	ENST00000589054		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000256832		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000382850		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000256830		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-intron	ENST00000374623	ENST00000588516		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000456986		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000435432		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000357895		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000586263		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000456173		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
5CDS-5UTR	ENST00000374623	ENST00000431212		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	LUZP1	chr1	23417683	-	NEDD4L	chr18	55919233	+
Frame-shit	ENST00000569482	ENST00000306726		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
5CDS-intron	ENST00000569482	ENST00000564970		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
Frame-shit	ENST00000565683	ENST00000306726		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
5CDS-intron	ENST00000565683	ENST00000564970		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
Frame-shit	ENST00000563622	ENST00000306726		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
5CDS-intron	ENST00000563622	ENST00000564970		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
Frame-shit	ENST00000267978	ENST00000306726		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
5CDS-intron	ENST00000267978	ENST00000564970		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
5UTR-3CDS	ENST00000563539	ENST00000306726		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
5UTR-intron	ENST00000563539	ENST00000564970		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAN2C1	chr15	75658863	-	PTPN9	chr15	75772255	-
In-frame	ENST00000373606	ENST00000520539		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000373606	ENST00000220959		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000373606	ENST00000518205		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000373606	ENST00000521922		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000373606	ENST00000519528		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397156	ENST00000520539		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397156	ENST00000220959		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397156	ENST00000518205		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397156	ENST00000521922		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397156	ENST00000519528		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397150	ENST00000520539		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397150	ENST00000220959		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397150	ENST00000518205		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397150	ENST00000521922		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397150	ENST00000519528		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397152	ENST00000520539		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397152	ENST00000220959		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397152	ENST00000518205		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397152	ENST00000521922		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397152	ENST00000519528		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000373605	ENST00000520539		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000373605	ENST00000220959		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000373605	ENST00000518205		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000373605	ENST00000521922		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000373605	ENST00000519528		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397151	ENST00000520539		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000397151	ENST00000220959		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397151	ENST00000518205		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397151	ENST00000521922		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
5CDS-intron	ENST00000397151	ENST00000519528		TCGA	RV	BLCA	TCGA-LC-A66R-01A	MANBAL	chr20	35929816	+	UBR5	chr8	103341627	-
In-frame	ENST00000013125	ENST00000238561		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MAP4K5	chr14	50971518	-	ADCK1	chr14	78353434	+
In-frame	ENST00000013125	ENST00000341211		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MAP4K5	chr14	50971518	-	ADCK1	chr14	78353434	+
5CDS-intron	ENST00000013125	ENST00000556560		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MAP4K5	chr14	50971518	-	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000557578	ENST00000238561		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MAP4K5	chr14	50971518	-	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000557578	ENST00000341211		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MAP4K5	chr14	50971518	-	ADCK1	chr14	78353434	+
intron-intron	ENST00000557578	ENST00000556560		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MAP4K5	chr14	50971518	-	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000373511	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373511	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373511	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000373498	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373498	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373498	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000350766	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000350766	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000350766	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000373503	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373503	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373503	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000394063	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000394063	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000394063	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000265960	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000265960	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000265960	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000373497	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373497	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000373497	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000394060	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000394060	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000394060	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
Frame-shit	ENST00000483937	ENST00000308724		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000483937	ENST00000397120		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000483937	ENST00000556277		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	MAPKAP1	chr9	128200748	-	AP1G2	chr14	24037279	-
In-frame	ENST00000571589	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000571589	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000571589	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000571589	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000571589	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000571589	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000571589	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000574045	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000574045	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000574045	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000574045	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000574045	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000574045	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000574045	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000318282	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000318282	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000318282	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000318282	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000318282	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000318282	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000318282	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000572567	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000572567	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000572567	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000572567	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000572567	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000572567	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000572567	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000341243	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000341243	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000341243	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000341243	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000341243	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000341243	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000341243	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000575537	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000575537	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000575537	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000575537	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-intron	ENST00000575537	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-intron	ENST00000575537	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
intron-intron	ENST00000575537	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000573051	ENST00000358621		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000573051	ENST00000357447		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000573051	ENST00000378503		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000573051	ENST00000342409		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000573051	ENST00000493380		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000573051	ENST00000475141		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000573051	ENST00000492155		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	MKL2	chr16	14312855	+	FRMD4A	chr10	13900912	-
In-frame	ENST00000261681	ENST00000315266		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
In-frame	ENST00000261681	ENST00000478722		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-intron	ENST00000261681	ENST00000459628		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-intron	ENST00000261681	ENST00000543237		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-intron	ENST00000261681	ENST00000305960		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
In-frame	ENST00000555925	ENST00000315266		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
In-frame	ENST00000555925	ENST00000478722		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-intron	ENST00000555925	ENST00000459628		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-intron	ENST00000555925	ENST00000543237		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-intron	ENST00000555925	ENST00000305960		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
5CDS-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-intron	ENST00000554911	ENST00000459628		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-intron	ENST00000554911	ENST00000543237		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-intron	ENST00000554911	ENST00000305960		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-intron	ENST00000556345	ENST00000459628		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-intron	ENST00000556345	ENST00000543237		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-intron	ENST00000556345	ENST00000305960		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
intron-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MPP5	chr14	67770316	+	GPHN	chr14	67576857	+
Frame-shit	ENST00000377122	ENST00000306482		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	NEBL	chr10	21101698	-	PRL	chr6	22292874	-
Frame-shit	ENST00000417816	ENST00000306482		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	NEBL	chr10	21101698	-	PRL	chr6	22292874	-
Frame-shit	ENST00000377159	ENST00000306482		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	NEBL	chr10	21101698	-	PRL	chr6	22292874	-
intron-3CDS	ENST00000377119	ENST00000306482		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	NEBL	chr10	21101698	-	PRL	chr6	22292874	-
intron-3CDS	ENST00000464278	ENST00000306482		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	NEBL	chr10	21101698	-	PRL	chr6	22292874	-
In-frame	ENST00000436750	ENST00000357056		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000436750	ENST00000328459		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
5CDS-intron	ENST00000436750	ENST00000554654		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000455213	ENST00000357056		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000455213	ENST00000328459		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
5CDS-intron	ENST00000455213	ENST00000554654		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000403422	ENST00000357056		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000403422	ENST00000328459		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
5CDS-intron	ENST00000403422	ENST00000554654		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
intron-3CDS	ENST00000528323	ENST00000357056		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
intron-3CDS	ENST00000528323	ENST00000328459		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
intron-intron	ENST00000528323	ENST00000554654		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000284503	ENST00000357056		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
In-frame	ENST00000284503	ENST00000328459		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
5CDS-intron	ENST00000284503	ENST00000554654		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	NEIL2	chr8	11637459	+	TTC7B	chr14	91146879	-
Frame-shit	ENST00000367385	ENST00000368124		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
Frame-shit	ENST00000367385	ENST00000368125		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
5CDS-intron	ENST00000367385	ENST00000497636		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
Frame-shit	ENST00000538004	ENST00000368124		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
Frame-shit	ENST00000538004	ENST00000368125		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
5CDS-intron	ENST00000538004	ENST00000497636		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
intron-3CDS	ENST00000367383	ENST00000368124		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
intron-3CDS	ENST00000367383	ENST00000368125		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
intron-intron	ENST00000367383	ENST00000497636		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
intron-3CDS	ENST00000417895	ENST00000368124		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
intron-3CDS	ENST00000417895	ENST00000368125		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
intron-intron	ENST00000417895	ENST00000497636		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	NEK7	chr1	198233365	+	CADM3	chr1	159161726	+
Frame-shit	ENST00000589123	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000589123	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000589123	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000346156	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000346156	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000346156	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000395111	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000395111	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000395111	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000586919	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000586919	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000586919	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000341919	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000341919	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000341919	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000590282	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000590282	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000590282	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000443272	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000443272	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
5CDS-intron	ENST00000443272	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
intron-3CDS	ENST00000588839	ENST00000292672		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
intron-3CDS	ENST00000588839	ENST00000541430		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
intron-intron	ENST00000588839	ENST00000588101		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	NFIC	chr19	3382241	+	CELF5	chr19	3281197	+
Frame-shit	ENST00000407008	ENST00000262435		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	NLK	chr17	26370357	+	SMURF2	chr17	62542456	-
5CDS-intron	ENST00000407008	ENST00000578200		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	NLK	chr17	26370357	+	SMURF2	chr17	62542456	-
3UTR-3CDS	ENST00000583517	ENST00000262435		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	NLK	chr17	26370357	+	SMURF2	chr17	62542456	-
3UTR-intron	ENST00000583517	ENST00000578200		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	NLK	chr17	26370357	+	SMURF2	chr17	62542456	-
Frame-shit	ENST00000582037	ENST00000262435		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	NLK	chr17	26370357	+	SMURF2	chr17	62542456	-
5CDS-intron	ENST00000582037	ENST00000578200		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	NLK	chr17	26370357	+	SMURF2	chr17	62542456	-
intron-3CDS	ENST00000573169	ENST00000262467		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
intron-3CDS	ENST00000573169	ENST00000345221		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
intron-3CDS	ENST00000573169	ENST00000269280		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
intron-3CDS	ENST00000573169	ENST00000572272		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
intron-intron	ENST00000573169	ENST00000354411		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
intron-intron	ENST00000573169	ENST00000577119		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
intron-5UTR	ENST00000573169	ENST00000571307		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
In-frame	ENST00000573584	ENST00000262467		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
In-frame	ENST00000573584	ENST00000345221		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
In-frame	ENST00000573584	ENST00000269280		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
In-frame	ENST00000573584	ENST00000572272		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
5CDS-intron	ENST00000573584	ENST00000354411		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
5CDS-intron	ENST00000573584	ENST00000577119		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
5CDS-5UTR	ENST00000573584	ENST00000571307		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	NUP88	chr17	5319833	-	NLRP1	chr17	5440260	-
Frame-shit	ENST00000320580	ENST00000526986		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
In-frame	ENST00000320580	ENST00000310442		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
5CDS-5UTR	ENST00000320580	ENST00000525925		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000529757	ENST00000526986		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000529757	ENST00000310442		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-5UTR	ENST00000529757	ENST00000525925		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000524815	ENST00000526986		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000524815	ENST00000310442		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-5UTR	ENST00000524815	ENST00000525925		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
In-frame	ENST00000545260	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545260	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000545693	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000545693	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000350537	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000350537	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000346874	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000346874	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000374789	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374789	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000374790	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374790	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000374794	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374794	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000374788	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374788	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-3CDS	ENST00000466092	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000466092	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000374776	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374776	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000340077	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000340077	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-3CDS	ENST00000544292	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000544292	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
In-frame	ENST00000374773	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000374773	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-3CDS	ENST00000374768	ENST00000374746		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000374748		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000374749		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000374751		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000602371		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000374742		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000537177		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374768	ENST00000478044		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	PARD3	chr10	34985246	-	CUL2	chr10	35360267	-
5CDS-5UTR	ENST00000282096	ENST00000537344		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000282096	ENST00000256194		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000282096	ENST00000527546		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000282096	ENST00000342902		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-intron	ENST00000282096	ENST00000379612		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-intron	ENST00000282096	ENST00000527195		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000455098	ENST00000537344		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000455098	ENST00000256194		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000455098	ENST00000527546		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-5UTR	ENST00000455098	ENST00000342902		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-intron	ENST00000455098	ENST00000379612		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
5CDS-intron	ENST00000455098	ENST00000527195		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
3UTR-5UTR	ENST00000534317	ENST00000537344		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
3UTR-5UTR	ENST00000534317	ENST00000256194		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
3UTR-5UTR	ENST00000534317	ENST00000527546		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
3UTR-5UTR	ENST00000534317	ENST00000342902		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
3UTR-intron	ENST00000534317	ENST00000379612		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
3UTR-intron	ENST00000534317	ENST00000527195		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	PDE3B	chr11	14666599	+	MICAL2	chr11	12183626	+
intron-3CDS	ENST00000359895	ENST00000514747		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-5UTR	ENST00000359895	ENST00000329540		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-5UTR	ENST00000359895	ENST00000443375		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-intron	ENST00000359895	ENST00000508298		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
Frame-shit	ENST00000356618	ENST00000514747		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000356618	ENST00000329540		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000356618	ENST00000443375		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-intron	ENST00000356618	ENST00000508298		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
In-frame	ENST00000355841	ENST00000514747		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000355841	ENST00000329540		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000355841	ENST00000443375		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-intron	ENST00000355841	ENST00000508298		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-3CDS	ENST00000505746	ENST00000514747		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-5UTR	ENST00000505746	ENST00000329540		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-5UTR	ENST00000505746	ENST00000443375		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
intron-intron	ENST00000505746	ENST00000508298		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
In-frame	ENST00000393551	ENST00000514747		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000393551	ENST00000329540		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000393551	ENST00000443375		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-intron	ENST00000393551	ENST00000508298		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
In-frame	ENST00000355572	ENST00000514747		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000355572	ENST00000329540		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000355572	ENST00000443375		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-intron	ENST00000355572	ENST00000508298		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PDLIM7	chr5	176918808	-	FAM193B	chr5	176966148	-
5CDS-5UTR	ENST00000579146	ENST00000336308		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-intron	ENST00000579146	ENST00000578232		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000579146	ENST00000544210		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000579146	ENST00000394250		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000579146	ENST00000580611		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300658	ENST00000336308		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-intron	ENST00000300658	ENST00000578232		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300658	ENST00000544210		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300658	ENST00000394250		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300658	ENST00000580611		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
intron-5UTR	ENST00000378011	ENST00000336308		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
intron-intron	ENST00000378011	ENST00000578232		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
intron-5UTR	ENST00000378011	ENST00000544210		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
intron-5UTR	ENST00000378011	ENST00000394250		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
intron-5UTR	ENST00000378011	ENST00000580611		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000429199	ENST00000336308		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-intron	ENST00000429199	ENST00000578232		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000429199	ENST00000544210		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000429199	ENST00000394250		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000429199	ENST00000580611		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PGAP3	chr17	37840850	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000376573	ENST00000568047		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000376573	ENST00000320640		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000376573	ENST00000544001		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000545335	ENST00000568047		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000545335	ENST00000320640		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000545335	ENST00000544001		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000323883	ENST00000568047		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000323883	ENST00000320640		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000323883	ENST00000544001		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000422321	ENST00000568047		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000422321	ENST00000320640		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000422321	ENST00000544001		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	PIP4K2A	chr10	22839588	-	ITFG1	chr16	47196575	-
5UTR-3CDS	ENST00000291547	ENST00000335512		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3CDS	ENST00000291547	ENST00000539837		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000470987		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000291539		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398236		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398229		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398234		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398232		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398227		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398225		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000380328		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000328862		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000335440		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000398224		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000291547	ENST00000349112		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3CDS	ENST00000432907	ENST00000335512		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3CDS	ENST00000432907	ENST00000539837		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000470987		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000291539		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398236		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398229		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398234		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398232		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398227		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398225		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000380328		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000328862		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000335440		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000398224		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3UTR	ENST00000432907	ENST00000349112		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3CDS	ENST00000607150	ENST00000335512		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3CDS	ENST00000607150	ENST00000539837		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000470987		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000291539		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398236		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398229		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398234		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398232		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398227		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398225		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000380328		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000328862		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000335440		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000398224		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
intron-3UTR	ENST00000607150	ENST00000349112		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PKNOX1	chr21	44394774	+	PDE9A	chr21	44174100	+
5UTR-3CDS	ENST00000429150	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000429150	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000429150	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000416623	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000416623	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000416623	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000392309	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000392309	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000392309	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000392307	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000392307	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000392307	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000437412	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000437412	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000437412	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000444202	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000444202	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000444202	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000493898	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000493898	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-intron	ENST00000493898	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000360537	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000360537	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000360537	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000354765	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-3CDS	ENST00000354765	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
5UTR-intron	ENST00000354765	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000367572	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000367572	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-intron	ENST00000367572	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000367571	ENST00000370598		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000367571	ENST00000238918		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
intron-intron	ENST00000367571	ENST00000546190		TCGA	RV	BLCA	TCGA-GV-A40E-01A	PLAGL1	chr6	144290044	-	BAI3	chr6	70034764	+
In-frame	ENST00000329153	ENST00000261681		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
In-frame	ENST00000329153	ENST00000555925		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
5CDS-intron	ENST00000329153	ENST00000554911		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
5CDS-intron	ENST00000329153	ENST00000556345		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000417684	ENST00000261681		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000417684	ENST00000555925		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-intron	ENST00000417684	ENST00000554911		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-intron	ENST00000417684	ENST00000556345		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000559832	ENST00000261681		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000559832	ENST00000555925		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-intron	ENST00000559832	ENST00000554911		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
intron-intron	ENST00000559832	ENST00000556345		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	PLEKHH1	chr14	68035933	+	MPP5	chr14	67759228	+
5UTR-3CDS	ENST00000357628	ENST00000315289		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000357628	ENST00000395265		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000357628	ENST00000373789		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-intron	ENST00000357628	ENST00000395260		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000393329	ENST00000315289		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000393329	ENST00000395265		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000393329	ENST00000373789		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-intron	ENST00000393329	ENST00000395260		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000461288	ENST00000315289		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000461288	ENST00000395265		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-3CDS	ENST00000461288	ENST00000373789		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
5UTR-intron	ENST00000461288	ENST00000395260		TCGA	RV	BLCA	TCGA-BT-A42E-01A	POT1	chr7	124568869	-	RTKN2	chr10	63959620	-
intron-intron	ENST00000505305	ENST00000404479		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000505305	ENST00000318709		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000505305	ENST00000459629		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000505305	ENST00000409301		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
5CDS-intron	ENST00000301258	ENST00000404479		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
5CDS-intron	ENST00000301258	ENST00000318709		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
5CDS-intron	ENST00000301258	ENST00000459629		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
5CDS-intron	ENST00000301258	ENST00000409301		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000513264	ENST00000404479		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000513264	ENST00000318709		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000513264	ENST00000459629		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
intron-intron	ENST00000513264	ENST00000409301		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	PSCA	chr8	143764142	+	AVL9	chr7	32620439	+
Frame-shit	ENST00000230419	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
Frame-shit	ENST00000349241	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
Frame-shit	ENST00000345201	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
Frame-shit	ENST00000352931	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
intron-3CDS	ENST00000481273	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
Frame-shit	ENST00000476760	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
Frame-shit	ENST00000471863	ENST00000372808		TCGA	RV	BLCA	TCGA-ZF-AA4X-01A	PTK7	chr6	43044305	+	GNMT	chr6	42929950	+
5CDS-5UTR	ENST00000424085	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000424085	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000424085	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000257075	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000257075	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000257075	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000373747	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000373747	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000373747	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000426105	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000426105	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000426105	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000440538	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000440538	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000440538	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000373741	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000373741	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000373741	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000423018	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000423018	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000423018	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000373742	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-5UTR	ENST00000373742	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
5CDS-intron	ENST00000373742	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
intron-5UTR	ENST00000490546	ENST00000375155		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
intron-5UTR	ENST00000490546	ENST00000375153		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
intron-intron	ENST00000490546	ENST00000400548		TCGA	RV	BLCA	TCGA-LC-A66R-01A	PUM1	chr1	31532051	-	PQLC2	chr1	19644094	+
Frame-shit	ENST00000216962	ENST00000377899		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
Frame-shit	ENST00000216962	ENST00000262545		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
Frame-shit	ENST00000216962	ENST00000536609		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
5CDS-intron	ENST00000216962	ENST00000459871		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
intron-3CDS	ENST00000471359	ENST00000377899		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
intron-3CDS	ENST00000471359	ENST00000262545		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
intron-3CDS	ENST00000471359	ENST00000536609		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
intron-intron	ENST00000471359	ENST00000459871		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	PYGB	chr20	25263913	+	PCSK2	chr20	17410080	+
5UTR-3CDS	ENST00000399302	ENST00000257836		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	QSER1	chr11	32914880	+	PRRG4	chr11	32874842	+
3UTR-3CDS	ENST00000527250	ENST00000257836		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	QSER1	chr11	32914880	+	PRRG4	chr11	32874842	+
intron-3CDS	ENST00000527788	ENST00000257836		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	QSER1	chr11	32914880	+	PRRG4	chr11	32874842	+
5CDS-5UTR	ENST00000373664	ENST00000481038		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	RBL1	chr20	35724176	-	GPCPD1	chr20	5556624	-
5CDS-5UTR	ENST00000373664	ENST00000379019		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	RBL1	chr20	35724176	-	GPCPD1	chr20	5556624	-
5CDS-5UTR	ENST00000344359	ENST00000481038		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	RBL1	chr20	35724176	-	GPCPD1	chr20	5556624	-
5CDS-5UTR	ENST00000344359	ENST00000379019		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	RBL1	chr20	35724176	-	GPCPD1	chr20	5556624	-
intron-5UTR	ENST00000598590	ENST00000481038		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	RBL1	chr20	35724176	-	GPCPD1	chr20	5556624	-
intron-5UTR	ENST00000598590	ENST00000379019		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	RBL1	chr20	35724176	-	GPCPD1	chr20	5556624	-
5UTR-5UTR	ENST00000348370	ENST00000558772		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000348370	ENST00000219919		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000348370	ENST00000536493		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-intron	ENST00000348370	ENST00000559443		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000434298	ENST00000558772		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000434298	ENST00000219919		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000434298	ENST00000536493		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-intron	ENST00000434298	ENST00000559443		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000559209	ENST00000558772		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000559209	ENST00000219919		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-5UTR	ENST00000559209	ENST00000536493		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
5UTR-intron	ENST00000559209	ENST00000559443		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000557998	ENST00000558772		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000557998	ENST00000219919		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000557998	ENST00000536493		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-intron	ENST00000557998	ENST00000559443		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000561186	ENST00000558772		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000561186	ENST00000219919		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000561186	ENST00000536493		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-intron	ENST00000561186	ENST00000559443		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000560080	ENST00000558772		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000560080	ENST00000219919		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000560080	ENST00000536493		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-intron	ENST00000560080	ENST00000559443		TCGA	RV	BLCA	TCGA-XF-AAML-01A	RNF111	chr15	59280267	+	AQP9	chr15	58458872	+
intron-intron	ENST00000341084	ENST00000311028		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000341084	ENST00000395923		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000341084	ENST00000220931		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000341084	ENST00000521599		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000341084	ENST00000522951		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000341084	ENST00000519508		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000341084	ENST00000521371		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000311028		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000395923		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000220931		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000521599		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000522951		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000519508		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000519449	ENST00000521371		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000311028		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000395923		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000220931		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000521599		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000522951		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000519508		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
intron-intron	ENST00000523255	ENST00000521371		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	RNF19A	chr8	101348336	-	NCALD	chr8	102792207	-
Frame-shit	ENST00000305476	ENST00000327896		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SEMA4C	chr2	97529419	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000305476	ENST00000417561		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SEMA4C	chr2	97529419	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000305476	ENST00000490605		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SEMA4C	chr2	97529419	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000305476	ENST00000393526		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SEMA4C	chr2	97529419	-	FAM178B	chr2	97544230	-
5CDS-5UTR	ENST00000305476	ENST00000470789		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SEMA4C	chr2	97529419	-	FAM178B	chr2	97544230	-
5CDS-5UTR	ENST00000354234	ENST00000355854		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000354234	ENST00000347776		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000354234	ENST00000409308		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000354234	ENST00000410043		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-intron	ENST00000354234	ENST00000409130		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000354234	ENST00000476943		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000317257	ENST00000355854		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000317257	ENST00000347776		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000317257	ENST00000409308		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000317257	ENST00000410043		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-intron	ENST00000317257	ENST00000409130		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000317257	ENST00000476943		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000481439	ENST00000355854		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000481439	ENST00000347776		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000481439	ENST00000409308		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000481439	ENST00000410043		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-intron	ENST00000481439	ENST00000409130		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000481439	ENST00000476943		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000258672	ENST00000355854		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000258672	ENST00000347776		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000258672	ENST00000409308		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000258672	ENST00000410043		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-intron	ENST00000258672	ENST00000409130		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000258672	ENST00000476943		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SETDB2	chr13	50062766	+	CAB39L	chr13	49957077	-
Frame-shit	ENST00000225519	ENST00000526355		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	SHPK	chr17	3533499	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000225519	ENST00000282249		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	SHPK	chr17	3533499	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000225519	ENST00000347596		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	SHPK	chr17	3533499	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000572705	ENST00000526355		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	SHPK	chr17	3533499	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000572705	ENST00000282249		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	SHPK	chr17	3533499	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000572705	ENST00000347596		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	SHPK	chr17	3533499	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000327268	ENST00000300900		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	SLC16A6	chr17	66268780	-	CA4	chr17	58232675	+
Frame-shit	ENST00000580666	ENST00000300900		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	SLC16A6	chr17	66268780	-	CA4	chr17	58232675	+
5UTR-3CDS	ENST00000552432	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
5UTR-3CDS	ENST00000547379	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
5UTR-3CDS	ENST00000549465	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
intron-3CDS	ENST00000552024	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
intron-3CDS	ENST00000261187	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
intron-3CDS	ENST00000543448	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
intron-3CDS	ENST00000549588	ENST00000243056		TCGA	RV	BLCA	TCGA-DK-AA71-01A	SLC16A7	chr12	59990017	+	HOXC13	chr12	54338784	+
5CDS-intron	ENST00000555449	ENST00000536774		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000555449	ENST00000327441		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000555449	ENST00000539062		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-5UTR	ENST00000555449	ENST00000556451		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000555449	ENST00000396294		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000555449	ENST00000545536		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000555449	ENST00000537471		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000555449	ENST00000539174		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000536774		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000327441		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000539062		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-5UTR	ENST00000331299	ENST00000556451		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000396294		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000545536		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000537471		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5CDS-intron	ENST00000331299	ENST00000539174		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000536774		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000327441		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000539062		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-5UTR	ENST00000557611	ENST00000556451		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000396294		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000545536		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000537471		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
5UTR-intron	ENST00000557611	ENST00000539174		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	SLC25A21	chr14	37641486	-	MIPOL1	chr14	37681435	+
intron-5UTR	ENST00000454300	ENST00000389757		TCGA	RV	BLCA	TCGA-FD-A6TK-01A	TANC1	chr2	160007067	+	PKP4	chr2	159389692	+
intron-5UTR	ENST00000454300	ENST00000389759		TCGA	RV	BLCA	TCGA-FD-A6TK-01A	TANC1	chr2	160007067	+	PKP4	chr2	159389692	+
intron-intron	ENST00000454300	ENST00000495123		TCGA	RV	BLCA	TCGA-FD-A6TK-01A	TANC1	chr2	160007067	+	PKP4	chr2	159389692	+
5CDS-5UTR	ENST00000263635	ENST00000389757		TCGA	RV	BLCA	TCGA-FD-A6TK-01A	TANC1	chr2	160007067	+	PKP4	chr2	159389692	+
5CDS-5UTR	ENST00000263635	ENST00000389759		TCGA	RV	BLCA	TCGA-FD-A6TK-01A	TANC1	chr2	160007067	+	PKP4	chr2	159389692	+
5CDS-intron	ENST00000263635	ENST00000495123		TCGA	RV	BLCA	TCGA-FD-A6TK-01A	TANC1	chr2	160007067	+	PKP4	chr2	159389692	+
In-frame	ENST00000490103	ENST00000326291		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
5CDS-intron	ENST00000490103	ENST00000489922		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
Frame-shit	ENST00000397871	ENST00000326291		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
5CDS-intron	ENST00000397871	ENST00000489922		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
In-frame	ENST00000397872	ENST00000326291		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
5CDS-intron	ENST00000397872	ENST00000489922		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
Frame-shit	ENST00000397873	ENST00000326291		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
5CDS-intron	ENST00000397873	ENST00000489922		TCGA	RV	BLCA	TCGA-GU-AATP-01A	THOC5	chr22	29916987	-	PIBF1	chr13	73505303	+
5UTR-3CDS	ENST00000301665	ENST00000378079		TCGA	RV	BLCA	TCGA-FD-A43P-01A	TMEM99	chr17	38989451	+	FBXO47	chr17	37111186	-
intron-3CDS	ENST00000496847	ENST00000378079		TCGA	RV	BLCA	TCGA-FD-A43P-01A	TMEM99	chr17	38989451	+	FBXO47	chr17	37111186	-
In-frame	ENST00000344887	ENST00000355202		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	TNNI3	chr19	55668947	-	ZNF607	chr19	38200723	-
In-frame	ENST00000344887	ENST00000395835		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	TNNI3	chr19	55668947	-	ZNF607	chr19	38200723	-
intron-3CDS	ENST00000588882	ENST00000355202		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	TNNI3	chr19	55668947	-	ZNF607	chr19	38200723	-
intron-3CDS	ENST00000588882	ENST00000395835		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	TNNI3	chr19	55668947	-	ZNF607	chr19	38200723	-
5UTR-3CDS	ENST00000590463	ENST00000355202		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	TNNI3	chr19	55668947	-	ZNF607	chr19	38200723	-
5UTR-3CDS	ENST00000590463	ENST00000395835		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	TNNI3	chr19	55668947	-	ZNF607	chr19	38200723	-
5CDS-5UTR	ENST00000321105	ENST00000536306		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-5UTR	ENST00000321105	ENST00000543897		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-5UTR	ENST00000321105	ENST00000336229		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-intron	ENST00000321105	ENST00000538116		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5UTR-5UTR	ENST00000540524	ENST00000536306		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5UTR-5UTR	ENST00000540524	ENST00000543897		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5UTR-5UTR	ENST00000540524	ENST00000336229		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5UTR-intron	ENST00000540524	ENST00000538116		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-5UTR	ENST00000542570	ENST00000536306		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-5UTR	ENST00000542570	ENST00000543897		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-5UTR	ENST00000542570	ENST00000336229		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-intron	ENST00000542570	ENST00000538116		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
intron-5UTR	ENST00000582230	ENST00000536306		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
intron-5UTR	ENST00000582230	ENST00000543897		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
intron-5UTR	ENST00000582230	ENST00000336229		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
intron-intron	ENST00000582230	ENST00000538116		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	TOP3A	chr17	18198017	-	ZCCHC8	chr12	122977336	-
5CDS-intron	ENST00000334379	ENST00000521654		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
5CDS-intron	ENST00000334379	ENST00000560949		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
5CDS-intron	ENST00000334379	ENST00000454842		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
5CDS-intron	ENST00000334379	ENST00000368414		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
5CDS-5UTR	ENST00000334379	ENST00000359704		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
5CDS-intron	ENST00000334379	ENST00000275184		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000368332	ENST00000521654		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000368332	ENST00000560949		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000368332	ENST00000454842		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000368332	ENST00000368414		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-5UTR	ENST00000368332	ENST00000359704		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000368332	ENST00000275184		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000450358	ENST00000521654		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000450358	ENST00000560949		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000450358	ENST00000454842		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000450358	ENST00000368414		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-5UTR	ENST00000450358	ENST00000359704		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000450358	ENST00000275184		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000489934	ENST00000521654		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000489934	ENST00000560949		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000489934	ENST00000454842		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000489934	ENST00000368414		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-5UTR	ENST00000489934	ENST00000359704		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
intron-intron	ENST00000489934	ENST00000275184		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TRMT11	chr6	126342426	+	RNF217	chr6	125330320	+
Frame-shit	ENST00000505624	ENST00000415676		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
Frame-shit	ENST00000505624	ENST00000288197		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
Frame-shit	ENST00000505624	ENST00000474759		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
Frame-shit	ENST00000505624	ENST00000490478		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
5CDS-intron	ENST00000505624	ENST00000478261		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
3UTR-3CDS	ENST00000514080	ENST00000415676		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
3UTR-3CDS	ENST00000514080	ENST00000288197		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
3UTR-3CDS	ENST00000514080	ENST00000474759		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
3UTR-3CDS	ENST00000514080	ENST00000490478		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
3UTR-intron	ENST00000514080	ENST00000478261		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	TTC23L	chr5	34850413	+	CACNA2D3	chr3	54615830	+
5CDS-5UTR	ENST00000513247	ENST00000405837		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000513247	ENST00000433053		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000513247	ENST00000278893		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000513247	ENST00000360796		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000513247	ENST00000403550		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000513247	ENST00000407022		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000513247	ENST00000421906		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000513247	ENST00000537604		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000316461	ENST00000405837		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000316461	ENST00000433053		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000316461	ENST00000278893		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000316461	ENST00000360796		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000316461	ENST00000403550		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000316461	ENST00000407022		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000316461	ENST00000421906		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000316461	ENST00000537604		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000532583	ENST00000405837		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000532583	ENST00000433053		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000532583	ENST00000278893		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-5UTR	ENST00000532583	ENST00000360796		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000532583	ENST00000403550		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000532583	ENST00000407022		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000532583	ENST00000421906		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
5CDS-intron	ENST00000532583	ENST00000537604		TCGA	RV	BLCA	TCGA-GU-AATQ-01A	TTC9C	chr11	62496558	+	BSCL2	chr11	62474796	-
In-frame	ENST00000219689	ENST00000380110		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000219689	ENST00000223951		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000219689	ENST00000544538		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000219689	ENST00000397312		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000219689	ENST00000380117		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
5CDS-intron	ENST00000219689	ENST00000462649		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
intron-3CDS	ENST00000567975	ENST00000380110		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000567975	ENST00000223951		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000567975	ENST00000544538		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000567975	ENST00000397312		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000567975	ENST00000380117		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
intron-intron	ENST00000567975	ENST00000462649		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	USP31	chr16	23159959	-	ELAVL2	chr9	23762247	-
Frame-shit	ENST00000287387	ENST00000372868		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
Frame-shit	ENST00000287387	ENST00000372865		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
Frame-shit	ENST00000287387	ENST00000190983		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
5CDS-3UTR	ENST00000287387	ENST00000471629		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000523984	ENST00000372868		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000523984	ENST00000372865		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000523984	ENST00000190983		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3UTR	ENST00000523984	ENST00000471629		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000517609	ENST00000372868		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000517609	ENST00000372865		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000517609	ENST00000190983		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3UTR	ENST00000517609	ENST00000471629		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
Frame-shit	ENST00000523356	ENST00000372868		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
Frame-shit	ENST00000523356	ENST00000372865		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
Frame-shit	ENST00000523356	ENST00000190983		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
5CDS-3UTR	ENST00000523356	ENST00000471629		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000518125	ENST00000372868		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000518125	ENST00000372865		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3CDS	ENST00000518125	ENST00000190983		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
intron-3UTR	ENST00000518125	ENST00000471629		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	WDYHV1	chr8	124429172	+	WISP2	chr20	43355728	+
Frame-shit	ENST00000367590	ENST00000368194		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
5CDS-intron	ENST00000367590	ENST00000487682		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
5CDS-intron	ENST00000367590	ENST00000361409		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
5CDS-intron	ENST00000367590	ENST00000315174		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
Frame-shit	ENST00000367589	ENST00000368194		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
5CDS-intron	ENST00000367589	ENST00000487682		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
5CDS-intron	ENST00000367589	ENST00000361409		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
5CDS-intron	ENST00000367589	ENST00000315174		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
intron-3CDS	ENST00000467345	ENST00000368194		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
intron-intron	ENST00000467345	ENST00000487682		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
intron-intron	ENST00000467345	ENST00000361409		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
intron-intron	ENST00000467345	ENST00000315174		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	XPR1	chr1	180651547	+	ARHGEF11	chr1	156955965	-
Frame-shit	ENST00000378743	ENST00000549396		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000378743	ENST00000550584		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000378743	ENST00000549325		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000545296		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000550359		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000407050		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000333447		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000548586		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000443686		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000378743	ENST00000552948		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000378743	ENST00000541570		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000378743	ENST00000541017		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548100	ENST00000549396		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548100	ENST00000550584		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548100	ENST00000549325		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000545296		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000550359		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000407050		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000333447		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000548586		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000443686		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548100	ENST00000552948		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-intron	ENST00000548100	ENST00000541570		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-intron	ENST00000548100	ENST00000541017		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000552037	ENST00000549396		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000552037	ENST00000550584		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000552037	ENST00000549325		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000545296		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000550359		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000407050		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000333447		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000548586		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000443686		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000552037	ENST00000552948		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-intron	ENST00000552037	ENST00000541570		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-intron	ENST00000552037	ENST00000541017		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000549407	ENST00000549396		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000549407	ENST00000550584		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000549407	ENST00000549325		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000545296		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000550359		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000407050		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000333447		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000548586		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000443686		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000549407	ENST00000552948		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-intron	ENST00000549407	ENST00000541570		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
intron-intron	ENST00000549407	ENST00000541017		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	ZFC3H1	chr12	72036216	-	PPFIA2	chr12	81851645	-
In-frame	ENST00000446326	ENST00000261776		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-intron	ENST00000446326	ENST00000571759		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-5UTR	ENST00000446326	ENST00000536184		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
In-frame	ENST00000289816	ENST00000261776		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-intron	ENST00000289816	ENST00000571759		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-5UTR	ENST00000289816	ENST00000536184		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
In-frame	ENST00000568064	ENST00000261776		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-intron	ENST00000568064	ENST00000571759		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-5UTR	ENST00000568064	ENST00000536184		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
In-frame	ENST00000443381	ENST00000261776		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-intron	ENST00000443381	ENST00000571759		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
5CDS-5UTR	ENST00000443381	ENST00000536184		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ZNF276	chr16	89795726	+	VAC14	chr16	70732714	-
In-frame	ENST00000261560	ENST00000382148		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000261560	ENST00000447367		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000261560	ENST00000382150		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000261560	ENST00000382152		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000261560	ENST00000509207		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000261560	ENST00000382149		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000261560	ENST00000359001		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000599548	ENST00000382148		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000599548	ENST00000447367		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000599548	ENST00000382150		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000599548	ENST00000382152		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000599548	ENST00000509207		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000599548	ENST00000382149		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000599548	ENST00000359001		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000595401	ENST00000382148		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000595401	ENST00000447367		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000595401	ENST00000382150		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000595401	ENST00000382152		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000595401	ENST00000509207		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000595401	ENST00000382149		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000595401	ENST00000359001		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	ZNF430	chr19	21216990	+	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000327835	ENST00000315677		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000327835	ENST00000581527		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000327835	ENST00000400147		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000400149		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000400155		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000400150		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000584874		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000534970		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000539435		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000581699		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000400145		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000515196		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000327835	ENST00000478161		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000520336	ENST00000315677		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000520336	ENST00000581527		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000520336	ENST00000400147		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000400149		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000400155		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000400150		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000584874		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000534970		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000539435		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000581699		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000400145		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000515196		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000520336	ENST00000478161		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ZNF704	chr8	81733609	-	DLGAP1	chr18	3582246	-
In-frame	ENST00000427569	ENST00000583610		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
In-frame	ENST00000427569	ENST00000394294		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
In-frame	ENST00000427569	ENST00000264658		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
In-frame	ENST00000427569	ENST00000577399		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000416949	ENST00000583610		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000416949	ENST00000394294		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000416949	ENST00000264658		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000416949	ENST00000577399		TCGA	RV	BLCA	TCGA-BT-A2LA-01A	AARSD1	chr17	41108221	-	FBXL20	chr17	37499494	-
5CDS-intron	ENST00000318560	ENST00000484427		TCGA	RV	BLCA	TCGA-DK-A3IL-01A	ABL1	chr9	133763062	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000318560	ENST00000371764		TCGA	RV	BLCA	TCGA-DK-A3IL-01A	ABL1	chr9	133763062	+	DDX27	chr20	47849303	+
In-frame	ENST00000502732	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000502732	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000502732	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000502732	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000367623	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000367623	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000367623	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000367623	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000507173	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000507173	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000507173	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000507173	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000511413	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000511413	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000511413	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000511413	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000392043	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000392043	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
In-frame	ENST00000392043	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000392043	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000408940	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000408940	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000408940	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-intron	ENST00000408940	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000344730	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000344730	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000344730	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-intron	ENST00000344730	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000512653	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000512653	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000512653	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-intron	ENST00000512653	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000504405	ENST00000340360		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000504405	ENST00000321448		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000504405	ENST00000527087		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
intron-intron	ENST00000504405	ENST00000533598		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ABL2	chr1	179198376	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000361737	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361737	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361737	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361737	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000361737	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000361737	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000545242	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000545242	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000545242	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000545242	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000545242	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000545242	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000546334	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000546334	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000546334	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000546334	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000546334	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000546334	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000296372	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000296372	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000296372	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000296372	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000296372	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000296372	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5UTR-3CDS	ENST00000318888	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5UTR-3CDS	ENST00000318888	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5UTR-3CDS	ENST00000318888	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5UTR-3CDS	ENST00000318888	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5UTR-5UTR	ENST00000318888	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5UTR-5UTR	ENST00000318888	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000514025	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000514025	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000514025	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000514025	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-5UTR	ENST00000514025	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-5UTR	ENST00000514025	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000447017	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000447017	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000447017	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000447017	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000447017	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000447017	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361581	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361581	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361581	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000361581	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000361581	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000361581	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000341937	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000341937	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000341937	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000341937	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000341937	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000341937	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000407564	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000407564	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000407564	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000407564	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000407564	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000407564	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000505872	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000505872	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000505872	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000505872	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000505872	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000505872	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000428004	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000428004	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000428004	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000428004	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000428004	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
5CDS-5UTR	ENST00000428004	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000515079	ENST00000506140		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000515079	ENST00000515571		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000515079	ENST00000382599		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-3CDS	ENST00000515079	ENST00000507294		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-5UTR	ENST00000515079	ENST00000314348		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
intron-5UTR	ENST00000515079	ENST00000335585		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6382821	-
Frame-shit	ENST00000302538	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
In-frame	ENST00000544583	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000572441	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000574437	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000291107	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000543210	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000536794	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000573895	ENST00000331238		TCGA	RV	BLCA	TCGA-GU-A42P-01A	ABR	chr17	970317	-	RTN4RL1	chr17	1841102	-
In-frame	ENST00000265846	ENST00000402746		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000265846	ENST00000399654		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000265846	ENST00000406869		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000265846	ENST00000265854		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5CDS-intron	ENST00000265846	ENST00000486340		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000449296	ENST00000402746		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000449296	ENST00000399654		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000449296	ENST00000406869		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000449296	ENST00000265854		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5CDS-intron	ENST00000449296	ENST00000486340		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000539900	ENST00000402746		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000539900	ENST00000399654		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000539900	ENST00000406869		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
In-frame	ENST00000539900	ENST00000265854		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5CDS-intron	ENST00000539900	ENST00000486340		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5UTR-3CDS	ENST00000463358	ENST00000402746		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5UTR-3CDS	ENST00000463358	ENST00000399654		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5UTR-3CDS	ENST00000463358	ENST00000406869		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5UTR-3CDS	ENST00000463358	ENST00000265854		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5UTR-intron	ENST00000463358	ENST00000486340		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ADAP1	chr7	966189	-	MAD1L1	chr7	2108973	-
5UTR-3CDS	ENST00000560302	ENST00000286744		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3CDS	ENST00000560302	ENST00000567476		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3UTR	ENST00000560302	ENST00000567716		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3CDS	ENST00000394518	ENST00000286744		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3CDS	ENST00000394518	ENST00000567476		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3UTR	ENST00000394518	ENST00000567716		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3CDS	ENST00000361243	ENST00000286744		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3CDS	ENST00000361243	ENST00000567476		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
5UTR-3UTR	ENST00000361243	ENST00000567716		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-3CDS	ENST00000560579	ENST00000286744		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-3CDS	ENST00000560579	ENST00000567476		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-3UTR	ENST00000560579	ENST00000567716		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-3CDS	ENST00000394510	ENST00000286744		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-3CDS	ENST00000394510	ENST00000567476		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-3UTR	ENST00000394510	ENST00000567716		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	AKAP13	chr15	85924029	+	ADAMTSL3	chr15	84651025	+
intron-intron	ENST00000317829	ENST00000526660		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000317829	ENST00000289575		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000317829	ENST00000341411		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000317829	ENST00000532236		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000317829	ENST00000531756		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000317829	ENST00000525650		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000317829	ENST00000454962		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000317829	ENST00000428359		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000317837	ENST00000526660		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000317837	ENST00000289575		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000317837	ENST00000341411		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000317837	ENST00000532236		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000317837	ENST00000531756		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000317837	ENST00000525650		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000317837	ENST00000454962		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000317837	ENST00000428359		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000433060	ENST00000526660		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000433060	ENST00000289575		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000433060	ENST00000341411		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000433060	ENST00000532236		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000433060	ENST00000531756		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000433060	ENST00000525650		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000433060	ENST00000454962		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000433060	ENST00000428359		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539727	ENST00000526660		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539727	ENST00000289575		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000539727	ENST00000341411		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539727	ENST00000532236		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539727	ENST00000531756		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539727	ENST00000525650		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539727	ENST00000454962		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000539727	ENST00000428359		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	AMOTL1	chr11	94528326	+	SLCO2B1	chr11	74873700	+
Frame-shit	ENST00000356015	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000356015	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
Frame-shit	ENST00000432560	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000432560	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
Frame-shit	ENST00000357586	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000357586	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
Frame-shit	ENST00000405198	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000405198	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
Frame-shit	ENST00000317368	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000317368	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
Frame-shit	ENST00000402502	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000402502	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
Frame-shit	ENST00000415447	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
5CDS-intron	ENST00000415447	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
intron-3CDS	ENST00000472057	ENST00000216121		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
intron-intron	ENST00000472057	ENST00000494966		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	AP1B1	chr22	29745207	-	NIPSNAP1	chr22	29954942	-
In-frame	ENST00000355272	ENST00000398665		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
5CDS-intron	ENST00000355272	ENST00000608122		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
In-frame	ENST00000356926	ENST00000398665		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
5CDS-intron	ENST00000356926	ENST00000608122		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
In-frame	ENST00000350812	ENST00000398665		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
5CDS-intron	ENST00000350812	ENST00000608122		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
In-frame	ENST00000345016	ENST00000398665		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
5CDS-intron	ENST00000345016	ENST00000608122		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
intron-3CDS	ENST00000590683	ENST00000398665		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
intron-intron	ENST00000590683	ENST00000608122		TCGA	RV	BLCA	TCGA-GV-A40G-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2180712	+
Frame-shit	ENST00000317133	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000317133	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375741	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375741	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375739	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375739	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000370623	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000370623	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
intron-3CDS	ENST00000544132	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
intron-3CDS	ENST00000544132	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000218789	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000218789	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375736	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375736	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000426073	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000426073	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375737	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375737	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375723	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000375723	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000478679	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000478679	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
3UTR-3CDS	ENST00000483189	ENST00000285407		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
3UTR-3CDS	ENST00000483189	ENST00000395884		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ARHGEF7	chr13	111896641	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000357668	ENST00000338316		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
Frame-shit	ENST00000357668	ENST00000537121		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
5CDS-intron	ENST00000357668	ENST00000513693		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
Frame-shit	ENST00000518721	ENST00000338316		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
Frame-shit	ENST00000518721	ENST00000537121		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
5CDS-intron	ENST00000518721	ENST00000513693		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
intron-3CDS	ENST00000520625	ENST00000338316		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
intron-3CDS	ENST00000520625	ENST00000537121		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
intron-intron	ENST00000520625	ENST00000513693		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	ASAP1	chr8	131226802	-	ADCY2	chr5	7784478	+
Frame-shit	ENST00000541428	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000541428	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000541428	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000541428	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000541428	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000379454	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000379454	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000379454	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000379454	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000379454	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000523897	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000523897	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000523897	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000523897	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000523897	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000522919	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000522919	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000522919	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000522919	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000522919	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000356457	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000356457	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000356457	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000356457	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000356457	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000518068	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000518068	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000518068	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000518068	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000518068	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517903	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000517903	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517903	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517903	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000517903	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000445642	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000445642	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000445642	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000445642	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000445642	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517847	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000517847	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517847	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517847	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000517847	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000522835	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000522835	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000522835	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000522835	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000522835	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517856	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000517856	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517856	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517856	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000517856	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000389204	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000389204	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000389204	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000389204	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000389204	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000522603	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000522603	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000522603	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000522603	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000522603	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000379449	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000379449	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000379449	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000379449	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000379449	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517661	ENST00000397901		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000517661	ENST00000253475		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517661	ENST00000535997		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000517661	ENST00000550102		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000517661	ENST00000547614		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	ASPH	chr8	62593527	-	CHMP1A	chr16	89713739	-
5CDS-intron	ENST00000369762	ENST00000371917		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ATP6AP1	chrX	153664862	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000369762	ENST00000493140		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ATP6AP1	chrX	153664862	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000484908	ENST00000371917		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ATP6AP1	chrX	153664862	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000484908	ENST00000493140		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ATP6AP1	chrX	153664862	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000399782	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000399782	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000399782	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000399782	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000317582	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000317582	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000317582	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000317582	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000543133	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000543133	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000543133	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000543133	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000538149	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000538149	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000538149	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000538149	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000337612	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000337612	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000337612	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000337612	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000493680	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000493680	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000493680	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000493680	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000355028	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000355028	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000355028	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000355028	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000418951	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000418951	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000418951	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000418951	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000485631	ENST00000585441		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000485631	ENST00000590503		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000485631	ENST00000589413		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
intron-intron	ENST00000485631	ENST00000352998		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	BCL2L13	chr22	18185152	+	ZNF383	chr19	37733371	+
5UTR-5UTR	ENST00000543740	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000543740	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000543740	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000543740	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000378090	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000378090	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000378090	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000378090	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000547975	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000547975	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000547975	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000547975	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000549478	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000549478	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000549478	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000549478	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000553183	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000553183	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000553183	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000553183	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000547945	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000547945	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000547945	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000547945	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000552940	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000552940	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000552940	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000552940	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000546819	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000546819	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000546819	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000546819	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000546540	ENST00000360814		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000546540	ENST00000546436		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-intron	ENST00000546540	ENST00000548660		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000546540	ENST00000547583		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	C12orf73	chr12	104359294	-	GLT8D2	chr12	104415269	-
5UTR-3CDS	ENST00000359470	ENST00000328205		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	C1orf116	chr1	207205924	-	LIN9	chr1	226438620	-
5UTR-3CDS	ENST00000359470	ENST00000366801		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	C1orf116	chr1	207205924	-	LIN9	chr1	226438620	-
5UTR-3CDS	ENST00000359470	ENST00000481685		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	C1orf116	chr1	207205924	-	LIN9	chr1	226438620	-
5UTR-3CDS	ENST00000461135	ENST00000328205		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	C1orf116	chr1	207205924	-	LIN9	chr1	226438620	-
5UTR-3CDS	ENST00000461135	ENST00000366801		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	C1orf116	chr1	207205924	-	LIN9	chr1	226438620	-
5UTR-3CDS	ENST00000461135	ENST00000481685		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	C1orf116	chr1	207205924	-	LIN9	chr1	226438620	-
Frame-shit	ENST00000399496	ENST00000319481		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000399496	ENST00000399443		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000399496	ENST00000357041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000399496	ENST00000399441		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000399496	ENST00000582618		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-3CDS	ENST00000399481	ENST00000319481		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-5UTR	ENST00000399481	ENST00000399443		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-5UTR	ENST00000399481	ENST00000357041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-intron	ENST00000399481	ENST00000399441		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-intron	ENST00000399481	ENST00000582618		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
Frame-shit	ENST00000415309	ENST00000319481		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000415309	ENST00000399443		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000415309	ENST00000357041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000415309	ENST00000399441		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000415309	ENST00000582618		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-3CDS	ENST00000327201	ENST00000319481		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-5UTR	ENST00000327201	ENST00000399443		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-5UTR	ENST00000327201	ENST00000357041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-intron	ENST00000327201	ENST00000399441		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
intron-intron	ENST00000327201	ENST00000582618		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
Frame-shit	ENST00000581397	ENST00000319481		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000581397	ENST00000399443		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000581397	ENST00000357041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000581397	ENST00000399441		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000581397	ENST00000582618		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
Frame-shit	ENST00000399499	ENST00000319481		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000399499	ENST00000399443		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-5UTR	ENST00000399499	ENST00000357041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000399499	ENST00000399441		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000399499	ENST00000582618		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CABYR	chr18	21723377	+	OSBPL1A	chr18	21819346	-
5CDS-intron	ENST00000407673	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000407673	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000407673	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000407673	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000407673	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000401624	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000401624	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000401624	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000401624	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000401624	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000404898	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000404898	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000404898	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000404898	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000404898	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000400164	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000400164	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000400164	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000400164	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000400164	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000336649	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000336649	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000336649	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000336649	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000336649	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000402142	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000402142	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000402142	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000402142	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
5CDS-intron	ENST00000402142	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
intron-intron	ENST00000471970	ENST00000318801		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
intron-intron	ENST00000471970	ENST00000216155		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
intron-intron	ENST00000471970	ENST00000406293		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
intron-intron	ENST00000471970	ENST00000328933		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
intron-intron	ENST00000471970	ENST00000381535		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CACNA1I	chr22	40069087	+	SYNGR1	chr22	39777701	+
In-frame	ENST00000316629	ENST00000519301		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000520407		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000523079		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000338921		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000356819		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000287845		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000341377		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000287842		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000521670		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000405005		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000520502		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000316629	ENST00000539990		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000316629	ENST00000523681		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000519301		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000520407		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000523079		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000338921		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000356819		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000287845		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000341377		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000287842		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000521670		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000405005		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000520502		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000395284	ENST00000539990		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000395284	ENST00000523681		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000519301		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000520407		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000523079		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000338921		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000356819		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000287845		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000341377		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000287842		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000521670		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000405005		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000520502		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-3CDS	ENST00000519760	ENST00000539990		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
3UTR-intron	ENST00000519760	ENST00000523681		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000519301		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000520407		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000523079		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000338921		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000356819		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000287845		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000341377		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000287842		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000521670		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000405005		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000520502		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000448257	ENST00000539990		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000448257	ENST00000523681		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000519301		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000520407		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000523079		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000338921		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000356819		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000287845		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000341377		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000287842		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000521670		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000405005		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000520502		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
In-frame	ENST00000373809	ENST00000539990		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000373809	ENST00000523681		TCGA	RV	BLCA	TCGA-FD-A5BR-01A	CDK1	chr10	62539960	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000274695	ENST00000330430		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000274695	ENST00000371374		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000274695	ENST00000306764		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000274695	ENST00000405162		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-intron	ENST00000378624	ENST00000330430		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000378624	ENST00000371374		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000378624	ENST00000306764		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000378624	ENST00000405162		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-intron	ENST00000378610	ENST00000330430		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000378610	ENST00000371374		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000378610	ENST00000306764		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5CDS-5UTR	ENST00000378610	ENST00000405162		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
intron-intron	ENST00000476517	ENST00000330430		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
intron-5UTR	ENST00000476517	ENST00000371374		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
intron-5UTR	ENST00000476517	ENST00000306764		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
intron-5UTR	ENST00000476517	ENST00000405162		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20781496	+	RCAN2	chr6	46424715	-
5UTR-3CDS	ENST00000366542	ENST00000292211		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
5UTR-5UTR	ENST00000366542	ENST00000497453		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
5UTR-3CDS	ENST00000366543	ENST00000292211		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
5UTR-5UTR	ENST00000366543	ENST00000497453		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
5UTR-3CDS	ENST00000366544	ENST00000292211		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
5UTR-5UTR	ENST00000366544	ENST00000497453		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
intron-3CDS	ENST00000468254	ENST00000292211		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
intron-5UTR	ENST00000468254	ENST00000497453		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
intron-3CDS	ENST00000481987	ENST00000292211		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
intron-5UTR	ENST00000481987	ENST00000497453		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
intron-3CDS	ENST00000490813	ENST00000292211		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
intron-5UTR	ENST00000490813	ENST00000497453		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CEP170	chr1	243418342	-	UBE2Q1	chr1	154528440	-
5UTR-5UTR	ENST00000361654	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000361654	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000361654	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-intron	ENST00000361654	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000545889	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000545889	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000545889	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000545889	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000302528	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000302528	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000302528	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000302528	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000358808	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000358808	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000358808	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-intron	ENST00000358808	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000537178	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000537178	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000537178	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
5UTR-intron	ENST00000537178	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000540338	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000540338	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000540338	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000540338	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000536634	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000536634	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000536634	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000536634	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000540539	ENST00000536306		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000540539	ENST00000543897		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000540539	ENST00000336229		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000540539	ENST00000538116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122967242	-
In-frame	ENST00000334983	ENST00000458535		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	CMTM7	chr3	32433557	+	CMTM8	chr3	32409364	+
In-frame	ENST00000334983	ENST00000307526		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	CMTM7	chr3	32433557	+	CMTM8	chr3	32409364	+
In-frame	ENST00000349718	ENST00000458535		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	CMTM7	chr3	32433557	+	CMTM8	chr3	32409364	+
In-frame	ENST00000349718	ENST00000307526		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	CMTM7	chr3	32433557	+	CMTM8	chr3	32409364	+
In-frame	ENST00000262367	ENST00000294016		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4016967	-
5CDS-intron	ENST00000262367	ENST00000571889		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4016967	-
In-frame	ENST00000382070	ENST00000294016		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4016967	-
5CDS-intron	ENST00000382070	ENST00000571889		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4016967	-
3UTR-5UTR	ENST00000540224	ENST00000332427		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CREBL2	chr12	12765121	+	GPR19	chr12	12848445	-
3UTR-5UTR	ENST00000540224	ENST00000537507		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CREBL2	chr12	12765121	+	GPR19	chr12	12848445	-
3UTR-intron	ENST00000540224	ENST00000540510		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CREBL2	chr12	12765121	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000228865	ENST00000332427		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CREBL2	chr12	12765121	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000228865	ENST00000537507		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CREBL2	chr12	12765121	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000228865	ENST00000540510		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CREBL2	chr12	12765121	+	GPR19	chr12	12848445	-
Frame-shit	ENST00000443503	ENST00000298139		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	CTDSPL	chr3	37903769	+	WRN	chr8	30954284	+
Frame-shit	ENST00000273179	ENST00000298139		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	CTDSPL	chr3	37903769	+	WRN	chr8	30954284	+
intron-3CDS	ENST00000310189	ENST00000298139		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	CTDSPL	chr3	37903769	+	WRN	chr8	30954284	+
intron-3CDS	ENST00000355078	ENST00000336314		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138088860	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000302763	ENST00000336314		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138088860	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000518825	ENST00000336314		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138088860	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000520400	ENST00000336314		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138088860	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000540387	ENST00000336314		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138088860	+	LARP1	chr5	154190807	+
5UTR-5UTR	ENST00000324344	ENST00000233047		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000324344	ENST00000572258		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
5UTR-3UTR	ENST00000324344	ENST00000574092		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000324344	ENST00000261388		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000324344	ENST00000451578		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000324344	ENST00000572599		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563934	ENST00000233047		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563934	ENST00000572258		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000563934	ENST00000574092		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563934	ENST00000261388		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563934	ENST00000451578		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563934	ENST00000572599		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	DCUN1D3	chr16	20911526	-	TMEM159	chr16	21172406	+
In-frame	ENST00000313250	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000313250	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000313250	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000313250	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000313250	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000313250	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000558263	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000558263	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000558263	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000558263	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000558263	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000558263	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000543741	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000543741	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000543741	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000543741	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000543741	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000543741	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000382761	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000382761	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000382761	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000382761	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000382761	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000382761	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397073	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397073	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397073	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000397073	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000397073	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000397073	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000308178	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000308178	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000308178	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000308178	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000308178	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000308178	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000421831	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000421831	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000421831	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000421831	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000421831	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000421831	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397075	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397075	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397075	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000397075	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000397075	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000397075	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397074	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397074	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000397074	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000397074	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000397074	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000397074	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000559632	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000559632	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000559632	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000559632	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000559632	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000559632	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000558581	ENST00000458591		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000558581	ENST00000421551		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
In-frame	ENST00000558581	ENST00000544052		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000558581	ENST00000541123		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000558581	ENST00000396629		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-intron	ENST00000558581	ENST00000554486		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	DHRS4	chr14	24423125	+	SCFD1	chr14	31103153	+
5CDS-5UTR	ENST00000585892	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000585892	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000585892	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000585892	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000585892	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000585892	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000585892	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000585892	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000585892	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000314646	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000314646	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000314646	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000314646	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000314646	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000314646	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000314646	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000314646	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000314646	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000359692	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000359692	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000359692	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000359692	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000359692	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000359692	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000359692	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000359692	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000359692	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000389253	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000389253	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000389253	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000389253	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000389253	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000389253	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000389253	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000389253	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000389253	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000355667	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000355667	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000355667	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000355667	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000355667	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000355667	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000355667	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000355667	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000355667	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000408974	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000408974	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000408974	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000408974	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000408974	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000408974	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000408974	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000408974	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000408974	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-5UTR	ENST00000591819	ENST00000544262		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-5UTR	ENST00000591819	ENST00000295381		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-5UTR	ENST00000591819	ENST00000409202		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-3UTR	ENST00000591819	ENST00000456116		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-3UTR	ENST00000591819	ENST00000467265		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-3UTR	ENST00000591819	ENST00000409030		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-3UTR	ENST00000591819	ENST00000409220		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-3UTR	ENST00000591819	ENST00000497079		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
intron-intron	ENST00000591819	ENST00000479844		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	DNM2	chr19	10829079	+	ARHGAP25	chr2	69002353	+
In-frame	ENST00000254730	ENST00000287437		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
In-frame	ENST00000254730	ENST00000522563		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
5CDS-5UTR	ENST00000254730	ENST00000517315		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
5CDS-intron	ENST00000254730	ENST00000521460		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-3CDS	ENST00000483457	ENST00000287437		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-3CDS	ENST00000483457	ENST00000522563		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-5UTR	ENST00000483457	ENST00000517315		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-intron	ENST00000483457	ENST00000521460		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-3CDS	ENST00000483569	ENST00000287437		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-3CDS	ENST00000483569	ENST00000522563		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-5UTR	ENST00000483569	ENST00000517315		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
intron-intron	ENST00000483569	ENST00000521460		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	EEFSEC	chr3	128077216	+	NSMCE2	chr8	126163413	+
In-frame	ENST00000327921	ENST00000556553		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000327921	ENST00000393545		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000327921	ENST00000356583		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
5CDS-3UTR	ENST00000327921	ENST00000554102		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
5CDS-3UTR	ENST00000327921	ENST00000045347		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000262233	ENST00000556553		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000262233	ENST00000393545		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000262233	ENST00000356583		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
5CDS-3UTR	ENST00000262233	ENST00000554102		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
5CDS-3UTR	ENST00000262233	ENST00000045347		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000334192	ENST00000556553		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000334192	ENST00000393545		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
In-frame	ENST00000334192	ENST00000356583		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
5CDS-3UTR	ENST00000334192	ENST00000554102		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
5CDS-3UTR	ENST00000334192	ENST00000045347		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
3UTR-3CDS	ENST00000556758	ENST00000556553		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
3UTR-3CDS	ENST00000556758	ENST00000393545		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
3UTR-3CDS	ENST00000556758	ENST00000356583		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
3UTR-3UTR	ENST00000556758	ENST00000554102		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
3UTR-3UTR	ENST00000556758	ENST00000045347		TCGA	RV	BLCA	TCGA-E7-A85H-01A	EML1	chr14	100317372	+	SPATA7	chr14	88857725	+
intron-3CDS	ENST00000356093	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000356093	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000356093	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000398863	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000398863	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000398863	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000343067	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000343067	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000343067	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000349460	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000349460	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000349460	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000373800	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000373800	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000373800	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000347529	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000347529	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000347529	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000373798	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000373798	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000373798	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
5UTR-3CDS	ENST00000373797	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
5UTR-5UTR	ENST00000373797	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
5UTR-5UTR	ENST00000373797	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-3CDS	ENST00000460378	ENST00000078527		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000460378	ENST00000449950		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
intron-5UTR	ENST00000460378	ENST00000374145		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	EPB41	chr1	29241280	+	PIGV	chr1	27120604	+
5UTR-intron	ENST00000543523	ENST00000535651		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000543523	ENST00000433979		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000543523	ENST00000538779		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000543523	ENST00000266497		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000543523	ENST00000536967		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000281172	ENST00000535651		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000281172	ENST00000433979		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000281172	ENST00000538779		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000281172	ENST00000266497		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-intron	ENST00000281172	ENST00000536967		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000543612	ENST00000535651		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000543612	ENST00000433979		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000543612	ENST00000538779		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000543612	ENST00000266497		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000543612	ENST00000536967		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000540613	ENST00000535651		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000540613	ENST00000433979		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000540613	ENST00000538779		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000540613	ENST00000266497		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000540613	ENST00000536967		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000542903	ENST00000535651		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000542903	ENST00000433979		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000542903	ENST00000538779		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000542903	ENST00000266497		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
intron-intron	ENST00000542903	ENST00000536967		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	EPS8	chr12	15942095	-	PIK3C2G	chr12	18641383	+
5UTR-3CDS	ENST00000284037	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000284037	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000284037	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000380943	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380943	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380943	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000416865	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000416865	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000416865	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000380935	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380935	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380935	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000380939	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380939	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380939	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000380936	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380936	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380936	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000380938	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380938	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000380938	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000511297	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000511297	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000511297	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-3CDS	ENST00000506030	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000506030	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
5UTR-intron	ENST00000506030	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
intron-3CDS	ENST00000508515	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
intron-intron	ENST00000508515	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
intron-intron	ENST00000508515	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
intron-3CDS	ENST00000503913	ENST00000262113		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
intron-intron	ENST00000503913	ENST00000523438		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
intron-intron	ENST00000503913	ENST00000520298		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	ERBB2IP	chr5	65222634	+	MYOM2	chr8	2005466	+
In-frame	ENST00000391945	ENST00000263257		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
5CDS-intron	ENST00000391945	ENST00000599462		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
In-frame	ENST00000391944	ENST00000263257		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
5CDS-intron	ENST00000391944	ENST00000599462		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
In-frame	ENST00000485403	ENST00000263257		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
5CDS-intron	ENST00000485403	ENST00000599462		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
In-frame	ENST00000391940	ENST00000263257		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
5CDS-intron	ENST00000391940	ENST00000599462		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
In-frame	ENST00000221481	ENST00000263257		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
5CDS-intron	ENST00000221481	ENST00000599462		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ERCC2	chr19	45871888	-	NOVA2	chr19	46444203	-
In-frame	ENST00000361577	ENST00000442123		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
In-frame	ENST00000361577	ENST00000354586		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
5CDS-intron	ENST00000361577	ENST00000556861		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
In-frame	ENST00000382233	ENST00000442123		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
In-frame	ENST00000382233	ENST00000354586		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
5CDS-intron	ENST00000382233	ENST00000556861		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
In-frame	ENST00000361462	ENST00000442123		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
In-frame	ENST00000361462	ENST00000354586		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
5CDS-intron	ENST00000361462	ENST00000556861		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	FAM179B	chr14	45433670	+	STYX	chr14	53211570	+
intron-3UTR	ENST00000503238	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000503238	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000503238	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000358350	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000358350	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000358350	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000537810	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000537810	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000537810	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000264319	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000264319	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000264319	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000507711	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000507711	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000507711	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000514783	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000514783	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
5UTR-3UTR	ENST00000514783	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000507873	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000507873	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000507873	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000506685	ENST00000519049		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000506685	ENST00000523211		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000506685	ENST00000328472		TCGA	RV	BLCA	TCGA-E7-A85H-01A	FRYL	chr4	48782095	-	NKAIN3	chr8	63492098	+
In-frame	ENST00000275364	ENST00000335606		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
Frame-shit	ENST00000275364	ENST00000382072		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-5UTR	ENST00000275364	ENST00000514195		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-5UTR	ENST00000275364	ENST00000382085		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000275364	ENST00000502637		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000275364	ENST00000441713		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000275364	ENST00000426255		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000275364	ENST00000512079		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000275364	ENST00000382068		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
In-frame	ENST00000544127	ENST00000335606		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
Frame-shit	ENST00000544127	ENST00000382072		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-5UTR	ENST00000544127	ENST00000514195		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-5UTR	ENST00000544127	ENST00000382085		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000544127	ENST00000502637		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000544127	ENST00000441713		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000544127	ENST00000426255		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000544127	ENST00000512079		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
5CDS-intron	ENST00000544127	ENST00000382068		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000491117	ENST00000335606		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000491117	ENST00000382072		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000491117	ENST00000514195		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000491117	ENST00000382085		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000491117	ENST00000502637		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000491117	ENST00000441713		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000491117	ENST00000426255		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000491117	ENST00000512079		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000491117	ENST00000382068		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000407904	ENST00000335606		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000407904	ENST00000382072		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000407904	ENST00000514195		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000407904	ENST00000382085		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407904	ENST00000502637		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407904	ENST00000441713		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407904	ENST00000426255		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407904	ENST00000512079		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407904	ENST00000382068		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000407653	ENST00000335606		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000407653	ENST00000382072		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000407653	ENST00000514195		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000407653	ENST00000382085		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407653	ENST00000502637		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407653	ENST00000441713		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407653	ENST00000426255		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407653	ENST00000512079		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000407653	ENST00000382068		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000396960	ENST00000335606		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-3CDS	ENST00000396960	ENST00000382072		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000396960	ENST00000514195		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-5UTR	ENST00000396960	ENST00000382085		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000396960	ENST00000502637		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000396960	ENST00000441713		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000396960	ENST00000426255		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000396960	ENST00000512079		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
intron-intron	ENST00000396960	ENST00000382068		TCGA	RV	BLCA	TCGA-GV-A40E-01A	GNA12	chr7	2883487	-	AMACR	chr5	33998932	-
Frame-shit	ENST00000437809	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000437809	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000437809	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000437809	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000437809	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000437809	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000437809	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000368331	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000368331	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000368331	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000368331	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000368331	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000368331	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000368331	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000271883	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000271883	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000271883	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000271883	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000271883	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000271883	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000271883	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000361040	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000361040	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000361040	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000361040	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
Frame-shit	ENST00000361040	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000361040	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5CDS-intron	ENST00000361040	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-3CDS	ENST00000471341	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-3CDS	ENST00000471341	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-3CDS	ENST00000471341	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-3CDS	ENST00000471341	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-3CDS	ENST00000471341	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-intron	ENST00000471341	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
5UTR-intron	ENST00000471341	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155922619	-
In-frame	ENST00000297440	ENST00000544604		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000297440	ENST00000332811		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000297440	ENST00000402174		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000297440	ENST00000406323		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000313147	ENST00000544604		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000313147	ENST00000332811		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000313147	ENST00000402174		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
In-frame	ENST00000313147	ENST00000406323		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
3UTR-3CDS	ENST00000438961	ENST00000544604		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
3UTR-3CDS	ENST00000438961	ENST00000332811		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
3UTR-3CDS	ENST00000438961	ENST00000402174		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
3UTR-3CDS	ENST00000438961	ENST00000406323		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
intron-3CDS	ENST00000403952	ENST00000544604		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
intron-3CDS	ENST00000403952	ENST00000332811		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
intron-3CDS	ENST00000403952	ENST00000402174		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
intron-3CDS	ENST00000403952	ENST00000406323		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	HEATR2	chr7	769484	+	ZNRF3	chr22	29442704	+
intron-5UTR	ENST00000438284	ENST00000314571		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000438284	ENST00000383797		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000438284	ENST00000454502		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000438284	ENST00000402228		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000438284	ENST00000444864		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000438284	ENST00000284995		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000438284	ENST00000415684		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-intron	ENST00000438284	ENST00000475595		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000314571		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000383797		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000454502		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000402228		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000444864		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000284995		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-5UTR	ENST00000431010	ENST00000415684		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
5UTR-intron	ENST00000431010	ENST00000475595		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000314571		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000383797		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000454502		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000402228		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000444864		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000284995		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-5UTR	ENST00000397056	ENST00000415684		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
intron-intron	ENST00000397056	ENST00000475595		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	HRH1	chr3	11196240	+	TSEN2	chr3	12531283	+
In-frame	ENST00000370836	ENST00000308744		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000370836	ENST00000344413		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
In-frame	ENST00000370836	ENST00000395999		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
In-frame	ENST00000370836	ENST00000358749		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
5CDS-intron	ENST00000370836	ENST00000506359		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
In-frame	ENST00000521489	ENST00000308744		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000521489	ENST00000344413		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
In-frame	ENST00000521489	ENST00000395999		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
In-frame	ENST00000521489	ENST00000358749		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
5CDS-intron	ENST00000521489	ENST00000506359		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000370833	ENST00000308744		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
In-frame	ENST00000370833	ENST00000344413		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000370833	ENST00000395999		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000370833	ENST00000358749		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
5CDS-intron	ENST00000370833	ENST00000506359		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000406696	ENST00000308744		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000406696	ENST00000344413		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000406696	ENST00000395999		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000406696	ENST00000358749		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-intron	ENST00000406696	ENST00000506359		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000602570	ENST00000308744		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000602570	ENST00000344413		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000602570	ENST00000395999		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000602570	ENST00000358749		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
intron-intron	ENST00000602570	ENST00000506359		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	HS6ST2	chrX	132090836	-	NPFFR2	chr4	73003757	+
5UTR-3CDS	ENST00000372396	ENST00000359947		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
5UTR-3CDS	ENST00000372396	ENST00000438120		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
5UTR-3CDS	ENST00000372396	ENST00000372413		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
5UTR-3CDS	ENST00000372396	ENST00000372414		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
5UTR-3CDS	ENST00000372396	ENST00000422171		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
5UTR-3UTR	ENST00000372396	ENST00000496447		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
intron-3CDS	ENST00000463151	ENST00000359947		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
intron-3CDS	ENST00000463151	ENST00000438120		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
intron-3CDS	ENST00000463151	ENST00000372413		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
intron-3CDS	ENST00000463151	ENST00000372414		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
intron-3CDS	ENST00000463151	ENST00000422171		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
intron-3UTR	ENST00000463151	ENST00000496447		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	KDM4A	chr1	44115923	+	PTPRF	chr1	44086509	+
Frame-shit	ENST00000261667	ENST00000398307		TCGA	RV	BLCA	TCGA-UY-A8OB-01A	KPNA3	chr13	50366574	-	MLNR	chr13	49796176	+
In-frame	ENST00000261667	ENST00000218721		TCGA	RV	BLCA	TCGA-UY-A8OB-01A	KPNA3	chr13	50366574	-	MLNR	chr13	49796176	+
5UTR-3CDS	ENST00000396267	ENST00000007699		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	KRBA2	chr17	8279218	-	YBX2	chr17	7196857	-
5UTR-5UTR	ENST00000396267	ENST00000570627		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	KRBA2	chr17	8279218	-	YBX2	chr17	7196857	-
intron-3CDS	ENST00000331336	ENST00000007699		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	KRBA2	chr17	8279218	-	YBX2	chr17	7196857	-
intron-5UTR	ENST00000331336	ENST00000570627		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	KRBA2	chr17	8279218	-	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000337431	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000354992	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000397394	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000402320	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
intron-5UTR	ENST00000452586	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000437602	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
intron-5UTR	ENST00000421232	ENST00000303592		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	LARGE	chr22	34000421	-	KCNJ4	chr22	38824176	-
Frame-shit	ENST00000535741	ENST00000460056		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
Frame-shit	ENST00000535741	ENST00000307765		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000535741	ENST00000423548		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000535741	ENST00000448688		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000535741	ENST00000343542		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000535741	ENST00000470033		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000535741	ENST00000472969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
In-frame	ENST00000510413	ENST00000460056		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
In-frame	ENST00000510413	ENST00000307765		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000510413	ENST00000423548		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000510413	ENST00000448688		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000510413	ENST00000343542		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000510413	ENST00000470033		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000510413	ENST00000472969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-3CDS	ENST00000503716	ENST00000460056		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-3CDS	ENST00000503716	ENST00000307765		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-intron	ENST00000503716	ENST00000423548		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-intron	ENST00000503716	ENST00000448688		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-intron	ENST00000503716	ENST00000343542		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-intron	ENST00000503716	ENST00000470033		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
intron-intron	ENST00000503716	ENST00000472969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
Frame-shit	ENST00000357115	ENST00000460056		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
Frame-shit	ENST00000357115	ENST00000307765		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000357115	ENST00000423548		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000357115	ENST00000448688		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000357115	ENST00000343542		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000357115	ENST00000470033		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000357115	ENST00000472969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
In-frame	ENST00000507224	ENST00000460056		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
In-frame	ENST00000507224	ENST00000307765		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000507224	ENST00000423548		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000507224	ENST00000448688		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000507224	ENST00000343542		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000507224	ENST00000470033		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-intron	ENST00000507224	ENST00000472969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	LRBA	chr4	151509200	-	RXFP1	chr4	159549790	+
5CDS-5UTR	ENST00000535741	ENST00000409598		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000535741	ENST00000424281		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000535741	ENST00000304527		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000535741	ENST00000455740		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000535741	ENST00000409252		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000535741	ENST00000514152		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000535741	ENST00000427414		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000535741	ENST00000604030		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000510413	ENST00000409598		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000510413	ENST00000424281		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000510413	ENST00000304527		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000510413	ENST00000455740		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000510413	ENST00000409252		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000510413	ENST00000514152		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000510413	ENST00000427414		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000510413	ENST00000604030		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000503716	ENST00000409598		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000503716	ENST00000424281		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000503716	ENST00000304527		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000503716	ENST00000455740		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000503716	ENST00000409252		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000503716	ENST00000514152		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000503716	ENST00000427414		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000503716	ENST00000604030		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000357115	ENST00000409598		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000357115	ENST00000424281		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000357115	ENST00000304527		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000357115	ENST00000455740		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000357115	ENST00000409252		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000357115	ENST00000514152		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000357115	ENST00000427414		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000357115	ENST00000604030		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000507224	ENST00000409598		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000507224	ENST00000424281		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000507224	ENST00000304527		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000507224	ENST00000455740		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000507224	ENST00000409252		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000507224	ENST00000514152		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000507224	ENST00000427414		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000507224	ENST00000604030		TCGA	RV	BLCA	TCGA-E7-A97Q-01A	LRBA	chr4	151656410	-	SH3D19	chr4	152147238	-
Frame-shit	ENST00000311191	ENST00000378319		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-5UTR	ENST00000311191	ENST00000357596		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-5UTR	ENST00000311191	ENST00000488958		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-intron	ENST00000311191	ENST00000460489		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
Frame-shit	ENST00000389798	ENST00000378319		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-5UTR	ENST00000389798	ENST00000357596		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-5UTR	ENST00000389798	ENST00000488958		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-intron	ENST00000389798	ENST00000460489		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
Frame-shit	ENST00000389797	ENST00000378319		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-5UTR	ENST00000389797	ENST00000357596		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-5UTR	ENST00000389797	ENST00000488958		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-intron	ENST00000389797	ENST00000460489		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50080771	+
5CDS-intron	ENST00000342922	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000342922	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000342922	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000402799	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000402799	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000402799	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000311027	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000311027	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000311027	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000406482	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000406482	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000406482	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000407859	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000407859	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000407859	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000349238	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000349238	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000349238	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000395344	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000395344	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000395344	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000395336	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000395336	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000395336	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000402192	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000402192	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000402192	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000405573	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000405573	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
5CDS-intron	ENST00000405573	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
intron-intron	ENST00000489415	ENST00000531428		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
intron-intron	ENST00000489415	ENST00000265970		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
intron-intron	ENST00000489415	ENST00000540361		TCGA	RV	BLCA	TCGA-FD-A43N-01A	MADD	chr11	47333393	+	PIK3C2A	chr11	17158172	-
Frame-shit	ENST00000261483	ENST00000304858		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	MAN2A1	chr5	109117299	+	HSPA4	chr5	132435237	+
5CDS-intron	ENST00000261483	ENST00000504328		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	MAN2A1	chr5	109117299	+	HSPA4	chr5	132435237	+
intron-3CDS	ENST00000505313	ENST00000304858		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	MAN2A1	chr5	109117299	+	HSPA4	chr5	132435237	+
intron-intron	ENST00000505313	ENST00000504328		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	MAN2A1	chr5	109117299	+	HSPA4	chr5	132435237	+
5UTR-intron	ENST00000383737	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000383737	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000383737	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000383737	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000395734	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000395734	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000395734	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000426837	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000426837	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000426837	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000360240	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000360240	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000360240	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000439356	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-5UTR	ENST00000439356	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
5UTR-intron	ENST00000439356	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000264724	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000264724	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000264724	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000420772	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000420772	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000420772	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000441748	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000441748	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000441748	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000462206	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000462206	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000462206	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000421967		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000426689		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000434267	ENST00000452211		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000450160		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000426723		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000444069		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000415644		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-5UTR	ENST00000434267	ENST00000415053		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000442597		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000447314		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000451657		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-intron	ENST00000434267	ENST00000435684		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	NME6	chr3	48342124	-
intron-3CDS	ENST00000375608	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000375608	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000375608	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000375608	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000442652	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000442652	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000442652	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000442652	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
Frame-shit	ENST00000375604	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
Frame-shit	ENST00000375604	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
5CDS-5UTR	ENST00000375604	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
5CDS-5UTR	ENST00000375604	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
Frame-shit	ENST00000397030	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
Frame-shit	ENST00000397030	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
5CDS-5UTR	ENST00000397030	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
5CDS-5UTR	ENST00000397030	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000535094	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000535094	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000535094	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000535094	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000421756	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000421756	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000421756	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000421756	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000375601	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000375601	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000375601	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000375601	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000397036	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000397036	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000397036	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000397036	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000434480	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000434480	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000434480	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000434480	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000423482	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000423482	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000423482	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000423482	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000375597	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000375597	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000375597	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000375597	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000397024	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000397024	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000397024	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000397024	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000480321	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000480321	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000480321	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000480321	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000397021	ENST00000397517		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000397021	ENST00000539966		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000397021	ENST00000481288		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000397021	ENST00000376547		TCGA	RV	BLCA	TCGA-DK-A2I4-01A	MCF2L	chr13	113623028	+	STK24	chr13	99171727	-
5UTR-intron	ENST00000298048	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000298048	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000538311	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000538311	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000536987	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000536987	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000536860	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000536860	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000545008	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000545008	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000536329	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000536329	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000541717	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000541717	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-intron	ENST00000543751	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
5UTR-5UTR	ENST00000543751	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
3UTR-intron	ENST00000487398	ENST00000351266		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
3UTR-5UTR	ENST00000487398	ENST00000378980		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	MELK	chr9	36573004	+	CNTFR	chr9	34581203	-
In-frame	ENST00000296350	ENST00000425327		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
In-frame	ENST00000296350	ENST00000393775		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
In-frame	ENST00000296350	ENST00000489689		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
In-frame	ENST00000296350	ENST00000354673		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
In-frame	ENST00000296350	ENST00000441144		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
In-frame	ENST00000296350	ENST00000491903		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
5CDS-intron	ENST00000296350	ENST00000459718		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000296351	ENST00000425327		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000296351	ENST00000393775		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000296351	ENST00000489689		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000296351	ENST00000354673		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000296351	ENST00000441144		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000296351	ENST00000491903		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
intron-intron	ENST00000296351	ENST00000459718		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	MFI2	chr3	196730772	-	IGSF11	chr3	118624565	-
Frame-shit	ENST00000536774	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000536774	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000536774	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000536774	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000536774	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000327441	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000327441	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000327441	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000327441	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000327441	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000539062	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000539062	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000539062	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000539062	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000539062	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000556451	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000556451	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000556451	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000556451	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000556451	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000396294	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000396294	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000396294	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000396294	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000396294	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000545536	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000545536	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000545536	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000545536	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000545536	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000537471	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000537471	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000537471	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000537471	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000537471	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000539174	ENST00000457714		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000539174	ENST00000361589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000539174	ENST00000401917		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000539174	ENST00000545397		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
intron-3UTR	ENST00000539174	ENST00000466350		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	MIPOL1	chr14	37777724	+	NLGN1	chr3	173993105	+
5CDS-5UTR	ENST00000580900	ENST00000379992		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000580900	ENST00000493941		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000580900	ENST00000308675		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000380172	ENST00000379992		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000380172	ENST00000493941		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000380172	ENST00000308675		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000460874	ENST00000379992		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000460874	ENST00000493941		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000460874	ENST00000308675		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000427788	ENST00000379992		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
intron-intron	ENST00000427788	ENST00000493941		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000427788	ENST00000308675		TCGA	RV	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	27950704	-
3UTR-3CDS	ENST00000339514	ENST00000320717		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000339514	ENST00000338435		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000339514	ENST00000409626		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000339514	ENST00000409428		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000339514	ENST00000409215		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000339514	ENST00000471443		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000392318	ENST00000320717		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000392318	ENST00000338435		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392318	ENST00000409626		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392318	ENST00000409428		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392318	ENST00000409215		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392318	ENST00000471443		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000304164	ENST00000320717		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000304164	ENST00000338435		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000304164	ENST00000409626		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000304164	ENST00000409428		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000304164	ENST00000409215		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000304164	ENST00000471443		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000392316	ENST00000320717		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-3CDS	ENST00000392316	ENST00000338435		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392316	ENST00000409626		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392316	ENST00000409428		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392316	ENST00000409215		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
3UTR-intron	ENST00000392316	ENST00000471443		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
Frame-shit	ENST00000439065	ENST00000320717		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
Frame-shit	ENST00000439065	ENST00000338435		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000439065	ENST00000409626		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000439065	ENST00000409428		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000439065	ENST00000409215		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000439065	ENST00000471443		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
intron-3CDS	ENST00000496992	ENST00000320717		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
intron-3CDS	ENST00000496992	ENST00000338435		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
intron-intron	ENST00000496992	ENST00000409626		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
intron-intron	ENST00000496992	ENST00000409428		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
intron-intron	ENST00000496992	ENST00000409215		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
intron-intron	ENST00000496992	ENST00000471443		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	MYO1B	chr2	192290042	+	GLS	chr2	191759878	+
Frame-shit	ENST00000285039	ENST00000442544		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
5CDS-intron	ENST00000285039	ENST00000412726		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
5CDS-intron	ENST00000285039	ENST00000581580		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
5CDS-intron	ENST00000285039	ENST00000580146		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-3CDS	ENST00000324581	ENST00000442544		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000324581	ENST00000412726		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000324581	ENST00000581580		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000324581	ENST00000580146		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-3CDS	ENST00000592688	ENST00000442544		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000592688	ENST00000412726		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000592688	ENST00000581580		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000592688	ENST00000580146		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-3CDS	ENST00000587895	ENST00000442544		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000587895	ENST00000412726		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000587895	ENST00000581580		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
intron-intron	ENST00000587895	ENST00000580146		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	MYO5B	chr18	47721137	-	DCC	chr18	50278424	+
5UTR-3CDS	ENST00000341724	ENST00000278979		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000341724	ENST00000398083		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000341724	ENST00000486996		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000341724	ENST00000398084		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000341724	ENST00000375966		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000341724	ENST00000339738		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000341724	ENST00000493115		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-3CDS	ENST00000372004	ENST00000278979		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000372004	ENST00000398083		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000372004	ENST00000486996		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000372004	ENST00000398084		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000372004	ENST00000375966		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000372004	ENST00000339738		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000372004	ENST00000493115		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-3CDS	ENST00000371998	ENST00000278979		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371998	ENST00000398083		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371998	ENST00000486996		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371998	ENST00000398084		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371998	ENST00000375966		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371998	ENST00000339738		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371998	ENST00000493115		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-3CDS	ENST00000371997	ENST00000278979		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371997	ENST00000398083		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371997	ENST00000486996		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371997	ENST00000398084		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371997	ENST00000375966		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371997	ENST00000339738		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
5UTR-5UTR	ENST00000371997	ENST00000493115		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-3CDS	ENST00000497292	ENST00000278979		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-5UTR	ENST00000497292	ENST00000398083		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-5UTR	ENST00000497292	ENST00000486996		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-5UTR	ENST00000497292	ENST00000398084		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-5UTR	ENST00000497292	ENST00000375966		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-5UTR	ENST00000497292	ENST00000339738		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
intron-5UTR	ENST00000497292	ENST00000493115		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	NCOA3	chr20	46130763	+	DUSP15	chr20	30454956	-
In-frame	ENST00000339754	ENST00000347528		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
In-frame	ENST00000339754	ENST00000289734		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
In-frame	ENST00000339754	ENST00000379758		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
In-frame	ENST00000339754	ENST00000396942		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
In-frame	ENST00000339754	ENST00000396945		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
In-frame	ENST00000339754	ENST00000352337		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
In-frame	ENST00000339754	ENST00000265709		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
5CDS-intron	ENST00000339754	ENST00000457297		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
5CDS-intron	ENST00000339754	ENST00000522231		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
5CDS-intron	ENST00000339754	ENST00000522543		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
5CDS-intron	ENST00000339754	ENST00000314214		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
5CDS-intron	ENST00000339754	ENST00000521407		TCGA	RV	BLCA	TCGA-BT-A20W-01A	NECAP1	chr12	8242895	+	ANK1	chr8	41529944	-
intron-3CDS	ENST00000397063	ENST00000264167		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000397063	ENST00000409888		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000397062	ENST00000264167		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000397062	ENST00000409888		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000446151	ENST00000264167		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000446151	ENST00000409888		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000464747	ENST00000264167		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000464747	ENST00000409888		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000423513	ENST00000264167		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
intron-3CDS	ENST00000423513	ENST00000409888		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	NFE2L2	chr2	178128165	-	AGPS	chr2	178386057	+
In-frame	ENST00000374399	ENST00000400556		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
Frame-shit	ENST00000374399	ENST00000400555		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
5CDS-intron	ENST00000374399	ENST00000580583		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
In-frame	ENST00000003912	ENST00000400556		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
Frame-shit	ENST00000003912	ENST00000400555		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
5CDS-intron	ENST00000003912	ENST00000580583		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-3CDS	ENST00000358028	ENST00000400556		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-3CDS	ENST00000358028	ENST00000400555		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-intron	ENST00000358028	ENST00000580583		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
In-frame	ENST00000339255	ENST00000400556		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
Frame-shit	ENST00000339255	ENST00000400555		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
5CDS-intron	ENST00000339255	ENST00000580583		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-3CDS	ENST00000428131	ENST00000400556		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-3CDS	ENST00000428131	ENST00000400555		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-intron	ENST00000428131	ENST00000580583		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-3CDS	ENST00000488155	ENST00000400556		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-3CDS	ENST00000488155	ENST00000400555		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
intron-intron	ENST00000488155	ENST00000580583		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	NIPAL3	chr1	24790610	+	PPP4R1	chr18	9547950	-
In-frame	ENST00000479054	ENST00000356770		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000394830		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000296302		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000337303		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000410007		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000409057		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000409114		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000479054	ENST00000409767		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000356770		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000394830		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000296302		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000337303		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000410007		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000409057		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000409114		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
In-frame	ENST00000345716	ENST00000409767		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000356770		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000394830		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000296302		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000337303		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000410007		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000409057		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000409114		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000488380	ENST00000409767		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000356770		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000394830		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000296302		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000337303		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000410007		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000409057		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000409114		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000420808	ENST00000409767		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000356770		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000394830		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000296302		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000337303		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000410007		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000409057		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000409114		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
intron-3CDS	ENST00000464280	ENST00000409767		TCGA	RV	BLCA	TCGA-FD-A3SN-01A	NISCH	chr3	52524849	+	PBRM1	chr3	52643971	-
Frame-shit	ENST00000327044	ENST00000418390		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	NOC2L	chr1	891303	-	TCEB3	chr1	24086002	+
Frame-shit	ENST00000327044	ENST00000609199		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	NOC2L	chr1	891303	-	TCEB3	chr1	24086002	+
5CDS-intron	ENST00000327044	ENST00000487554		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	NOC2L	chr1	891303	-	TCEB3	chr1	24086002	+
5UTR-3CDS	ENST00000487214	ENST00000418390		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	NOC2L	chr1	891303	-	TCEB3	chr1	24086002	+
5UTR-3CDS	ENST00000487214	ENST00000609199		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	NOC2L	chr1	891303	-	TCEB3	chr1	24086002	+
5UTR-intron	ENST00000487214	ENST00000487554		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	NOC2L	chr1	891303	-	TCEB3	chr1	24086002	+
In-frame	ENST00000487099	ENST00000338675		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000487099	ENST00000382409		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
5CDS-5UTR	ENST00000487099	ENST00000525904		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000373584	ENST00000338675		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000373584	ENST00000382409		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
5CDS-5UTR	ENST00000373584	ENST00000525904		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000416460	ENST00000338675		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000416460	ENST00000382409		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
5CDS-5UTR	ENST00000416460	ENST00000525904		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000344523	ENST00000338675		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000344523	ENST00000382409		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
5CDS-5UTR	ENST00000344523	ENST00000525904		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	NR6A1	chr9	127533299	-	DEAF1	chr11	654051	-
In-frame	ENST00000354179	ENST00000261800		TCGA	RV	BLCA	TCGA-BT-A20T-01A	NSD1	chr5	176675325	+	FAT2	chr5	150892167	-
In-frame	ENST00000439151	ENST00000261800		TCGA	RV	BLCA	TCGA-BT-A20T-01A	NSD1	chr5	176675325	+	FAT2	chr5	150892167	-
In-frame	ENST00000347982	ENST00000261800		TCGA	RV	BLCA	TCGA-BT-A20T-01A	NSD1	chr5	176675325	+	FAT2	chr5	150892167	-
In-frame	ENST00000361032	ENST00000261800		TCGA	RV	BLCA	TCGA-BT-A20T-01A	NSD1	chr5	176675325	+	FAT2	chr5	150892167	-
intron-3CDS	ENST00000511258	ENST00000261800		TCGA	RV	BLCA	TCGA-BT-A20T-01A	NSD1	chr5	176675325	+	FAT2	chr5	150892167	-
Frame-shit	ENST00000229179	ENST00000546373		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000229179	ENST00000551568		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000229179	ENST00000338356		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000229179	ENST00000549691		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000378905	ENST00000546373		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000378905	ENST00000551568		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000378905	ENST00000338356		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000378905	ENST00000549691		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000539906	ENST00000546373		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000539906	ENST00000551568		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
Frame-shit	ENST00000539906	ENST00000338356		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000539906	ENST00000549691		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000401003	ENST00000546373		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000401003	ENST00000551568		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000401003	ENST00000338356		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
intron-intron	ENST00000401003	ENST00000549691		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	NUP107	chr12	69115932	+	CPM	chr12	69279669	-
In-frame	ENST00000579146	ENST00000519595		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000579146	ENST00000518642		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000579146	ENST00000250173		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000579146	ENST00000520446		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
In-frame	ENST00000300658	ENST00000519595		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000300658	ENST00000518642		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000300658	ENST00000250173		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000300658	ENST00000520446		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
intron-3CDS	ENST00000378011	ENST00000519595		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
intron-intron	ENST00000378011	ENST00000518642		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
intron-intron	ENST00000378011	ENST00000250173		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
intron-intron	ENST00000378011	ENST00000520446		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
In-frame	ENST00000429199	ENST00000519595		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000429199	ENST00000518642		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000429199	ENST00000250173		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000429199	ENST00000520446		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	LRRC6	chr8	133622507	-
5UTR-5UTR	ENST00000257821	ENST00000311956		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000323180	ENST00000311956		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000418153	ENST00000311956		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
intron-5UTR	ENST00000527753	ENST00000311956		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
5UTR-3CDS	ENST00000545334	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000545334	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-intron	ENST00000545334	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000537927	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-intron	ENST00000537927	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000318304	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-intron	ENST00000318304	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000535047	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-intron	ENST00000535047	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000542629	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-intron	ENST00000542629	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-3CDS	ENST00000228425	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
5UTR-intron	ENST00000228425	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000335762		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399655		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000480911		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399644		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000344100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399638		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399629		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399597		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000327702		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399621		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399649		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399637		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000402845		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399591		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399641		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000347598		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399606		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399595		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399603		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399634		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000399617		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000541633	ENST00000406454		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-intron	ENST00000541633	ENST00000491104		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PPFIBP1	chr12	27677298	+	CACNA1C	chr12	2690756	+
3UTR-3CDS	ENST00000555690	ENST00000405093		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	PPP4R4	chr14	94642464	+	MYH6	chr14	23855340	-
3UTR-3CDS	ENST00000555690	ENST00000356287		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	PPP4R4	chr14	94642464	+	MYH6	chr14	23855340	-
Frame-shit	ENST00000304338	ENST00000405093		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	PPP4R4	chr14	94642464	+	MYH6	chr14	23855340	-
Frame-shit	ENST00000304338	ENST00000356287		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	PPP4R4	chr14	94642464	+	MYH6	chr14	23855340	-
Frame-shit	ENST00000328839	ENST00000405093		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	PPP4R4	chr14	94642464	+	MYH6	chr14	23855340	-
Frame-shit	ENST00000328839	ENST00000356287		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	PPP4R4	chr14	94642464	+	MYH6	chr14	23855340	-
In-frame	ENST00000317506	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
Frame-shit	ENST00000317506	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000317506	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000317506	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000317506	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000317506	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000317506	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5CDS-5UTR	ENST00000317506	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000448631	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
Frame-shit	ENST00000448631	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000448631	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000448631	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000448631	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000448631	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000448631	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5CDS-5UTR	ENST00000448631	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000536251	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-5UTR	ENST00000536251	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000411657	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
Frame-shit	ENST00000411657	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000411657	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000411657	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000411657	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000411657	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000411657	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5CDS-5UTR	ENST00000411657	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000602677	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
Frame-shit	ENST00000602677	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000602677	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000602677	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000602677	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000602677	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
In-frame	ENST00000602677	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5CDS-5UTR	ENST00000602677	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000425512	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-5UTR	ENST00000425512	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000422611		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000338335		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000316341		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000572037		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000541864		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000576616		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-3CDS	ENST00000602887	ENST00000537830		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
5UTR-5UTR	ENST00000602887	ENST00000572010		TCGA	RV	BLCA	TCGA-BT-A20W-01A	RANBP10	chr16	67805937	-	SLC12A4	chr16	67988676	-
intron-3CDS	ENST00000456989	ENST00000430627		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-3CDS	ENST00000456989	ENST00000447079		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-intron	ENST00000456989	ENST00000559545		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-3CDS	ENST00000544503	ENST00000430627		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-3CDS	ENST00000544503	ENST00000447079		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-intron	ENST00000544503	ENST00000559545		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-3CDS	ENST00000264644	ENST00000430627		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-3CDS	ENST00000264644	ENST00000447079		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
intron-intron	ENST00000264644	ENST00000559545		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
3UTR-3CDS	ENST00000540388	ENST00000430627		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
3UTR-3CDS	ENST00000540388	ENST00000447079		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
3UTR-intron	ENST00000540388	ENST00000559545		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
5UTR-3CDS	ENST00000436615	ENST00000430627		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
5UTR-3CDS	ENST00000436615	ENST00000447079		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
5UTR-intron	ENST00000436615	ENST00000559545		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	RAPGEFL1	chr17	38334633	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000452898	ENST00000514251		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000452898	ENST00000321464		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000452898	ENST00000441582		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
5CDS-intron	ENST00000452898	ENST00000512327		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000286364	ENST00000514251		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000286364	ENST00000321464		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000286364	ENST00000441582		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
5CDS-intron	ENST00000286364	ENST00000512327		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-3CDS	ENST00000509118	ENST00000514251		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-3CDS	ENST00000509118	ENST00000321464		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-3CDS	ENST00000509118	ENST00000441582		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-intron	ENST00000509118	ENST00000512327		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000241463	ENST00000444610		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
Frame-shit	ENST00000241463	ENST00000218981		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
Frame-shit	ENST00000241463	ENST00000280056		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
5CDS-5UTR	ENST00000241463	ENST00000490949		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000480803	ENST00000444610		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000480803	ENST00000218981		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000480803	ENST00000280056		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
intron-5UTR	ENST00000480803	ENST00000490949		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	RASL11A	chr13	27845205	+	DHRS12	chr13	52365393	-
5CDS-5UTR	ENST00000525754	ENST00000311172		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000525754	ENST00000409314		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000525754	ENST00000409418		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000525754	ENST00000458644		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000525754	ENST00000409853		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000525754	ENST00000409263		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000310046	ENST00000311172		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000310046	ENST00000409314		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000310046	ENST00000409418		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000310046	ENST00000458644		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000310046	ENST00000409853		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000310046	ENST00000409263		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000531969	ENST00000311172		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000531969	ENST00000409314		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000531969	ENST00000409418		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000531969	ENST00000458644		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000531969	ENST00000409853		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000531969	ENST00000409263		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000529195	ENST00000311172		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000529195	ENST00000409314		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000529195	ENST00000409418		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000529195	ENST00000458644		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000529195	ENST00000409853		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-intron	ENST00000529195	ENST00000409263		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000524637	ENST00000311172		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000524637	ENST00000409314		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000524637	ENST00000409418		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000524637	ENST00000458644		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000524637	ENST00000409853		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000524637	ENST00000409263		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000531036	ENST00000311172		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000531036	ENST00000409314		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000531036	ENST00000409418		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000531036	ENST00000458644		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000531036	ENST00000409853		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
intron-intron	ENST00000531036	ENST00000409263		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	RBM4B	chr11	66444139	-	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000299563	ENST00000263681		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
5CDS-intron	ENST00000299563	ENST00000527458		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
5CDS-intron	ENST00000299563	ENST00000532497		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
5CDS-intron	ENST00000299563	ENST00000532784		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
intron-intron	ENST00000341084	ENST00000311028		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000341084	ENST00000395923		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000341084	ENST00000220931		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000341084	ENST00000521599		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000341084	ENST00000522951		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000341084	ENST00000519508		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000341084	ENST00000521371		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000311028		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000395923		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000220931		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000521599		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000522951		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000519508		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000519449	ENST00000521371		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000311028		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000395923		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000220931		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000521599		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000522951		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000519508		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
intron-intron	ENST00000523255	ENST00000521371		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101269288	-	NCALD	chr8	102813898	-
In-frame	ENST00000508628	ENST00000270800		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	RNF213	chr17	78237577	+	IL22RA1	chr1	24465204	-
In-frame	ENST00000456466	ENST00000270800		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	RNF213	chr17	78237577	+	IL22RA1	chr1	24465204	-
In-frame	ENST00000582970	ENST00000270800		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	RNF213	chr17	78237577	+	IL22RA1	chr1	24465204	-
In-frame	ENST00000319921	ENST00000270800		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	RNF213	chr17	78237577	+	IL22RA1	chr1	24465204	-
intron-3CDS	ENST00000336301	ENST00000270800		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	RNF213	chr17	78237577	+	IL22RA1	chr1	24465204	-
intron-3CDS	ENST00000427003	ENST00000270800		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	RNF213	chr17	78237577	+	IL22RA1	chr1	24465204	-
5CDS-intron	ENST00000345093	ENST00000355192		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-5UTR	ENST00000345093	ENST00000308259		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-intron	ENST00000345093	ENST00000540804		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-5UTR	ENST00000345093	ENST00000535664		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-3UTR	ENST00000345093	ENST00000538725		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5UTR-intron	ENST00000394013	ENST00000355192		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5UTR-5UTR	ENST00000394013	ENST00000308259		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5UTR-intron	ENST00000394013	ENST00000540804		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5UTR-5UTR	ENST00000394013	ENST00000535664		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5UTR-3UTR	ENST00000394013	ENST00000538725		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-intron	ENST00000552656	ENST00000355192		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-5UTR	ENST00000552656	ENST00000308259		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-intron	ENST00000552656	ENST00000540804		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-5UTR	ENST00000552656	ENST00000535664		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-3UTR	ENST00000552656	ENST00000538725		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-intron	ENST00000552244	ENST00000355192		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-5UTR	ENST00000552244	ENST00000308259		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-intron	ENST00000552244	ENST00000540804		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-5UTR	ENST00000552244	ENST00000535664		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
5CDS-3UTR	ENST00000552244	ENST00000538725		TCGA	RV	BLCA	TCGA-UY-A78L-01A	RNF41	chr12	56607742	-	MSRB3	chr12	65702309	+
Frame-shit	ENST00000464233	ENST00000512091		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000514591		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000511324		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000506700		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000509896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000545650		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000508693		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000507164		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000507625		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000514157		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000504896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000514996		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000506720		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000506746		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
Frame-shit	ENST00000464233	ENST00000508946		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
5CDS-intron	ENST00000464233	ENST00000508078		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000512091		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000514591		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000511324		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000506700		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000509896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000545650		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000508693		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000507164		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000507625		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000514157		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000504896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000514996		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000506720		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000506746		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000436010	ENST00000508946		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
5CDS-intron	ENST00000436010	ENST00000508078		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000512091		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000514591		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000511324		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000506700		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000509896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000545650		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000508693		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000507164		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000507625		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000514157		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000504896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000514996		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000506720		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000506746		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000495273	ENST00000508946		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
5CDS-intron	ENST00000495273	ENST00000508078		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000512091		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000514591		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000511324		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000506700		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000509896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000545650		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000508693		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000507164		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000507625		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000514157		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000504896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000514996		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000506720		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000506746		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
In-frame	ENST00000467549	ENST00000508946		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
5CDS-intron	ENST00000467549	ENST00000508078		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000512091		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000514591		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000511324		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000506700		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000509896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000545650		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000508693		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000507164		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000507625		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000514157		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000504896		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000514996		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000506720		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000506746		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000466906	ENST00000508946		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-intron	ENST00000466906	ENST00000508078		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	ROBO1	chr3	78734896	-	LPHN3	chr4	62679527	+
intron-3CDS	ENST00000546961	ENST00000550433		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000548513		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000549446		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000298972		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000341669		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000350228		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000540018		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000393288		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000546961	ENST00000548243		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000550433		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000548513		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000549446		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000298972		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000341669		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000350228		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000540018		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000393288		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000550891	ENST00000548243		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000550433		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000548513		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000549446		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000298972		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000341669		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000350228		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000540018		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000354534	ENST00000393288		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000354534	ENST00000548243		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000550433		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000548513		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000549446		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000298972		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000341669		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000350228		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000540018		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000545061	ENST00000393288		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000545061	ENST00000548243		TCGA	RV	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52093575	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000373710	ENST00000344147		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373710	ENST00000479629		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373710	ENST00000373714		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373710	ENST00000546109		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373710	ENST00000422613		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
intron-3CDS	ENST00000536859	ENST00000344147		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
intron-3UTR	ENST00000536859	ENST00000479629		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
intron-3UTR	ENST00000536859	ENST00000373714		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
intron-3UTR	ENST00000536859	ENST00000546109		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
intron-3UTR	ENST00000536859	ENST00000422613		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
Frame-shit	ENST00000373709	ENST00000344147		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373709	ENST00000479629		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373709	ENST00000373714		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373709	ENST00000546109		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000373709	ENST00000422613		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
Frame-shit	ENST00000536384	ENST00000344147		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000536384	ENST00000479629		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000536384	ENST00000373714		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000536384	ENST00000546109		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000536384	ENST00000422613		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
Frame-shit	ENST00000491976	ENST00000344147		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000491976	ENST00000479629		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000491976	ENST00000373714		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000491976	ENST00000546109		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5CDS-3UTR	ENST00000491976	ENST00000422613		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SERINC2	chr1	31907524	+	ZCCHC17	chr1	31811804	+
5UTR-3CDS	ENST00000394947	ENST00000353809		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
5UTR-3CDS	ENST00000394947	ENST00000354638		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
5UTR-3CDS	ENST00000394947	ENST00000382996		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
intron-3CDS	ENST00000360439	ENST00000353809		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
intron-3CDS	ENST00000360439	ENST00000354638		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
intron-3CDS	ENST00000360439	ENST00000382996		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
intron-3CDS	ENST00000394949	ENST00000353809		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
intron-3CDS	ENST00000394949	ENST00000354638		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
intron-3CDS	ENST00000394949	ENST00000382996		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
5UTR-3CDS	ENST00000567289	ENST00000353809		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
5UTR-3CDS	ENST00000567289	ENST00000354638		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
5UTR-3CDS	ENST00000567289	ENST00000382996		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	SIN3A	chr15	75743764	-	OCA2	chr15	28211968	-
In-frame	ENST00000296589	ENST00000335606		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000296589	ENST00000382072		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000514195		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000382085		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000502637		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000441713		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000426255		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000512079		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000296589	ENST00000382068		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-3CDS	ENST00000342059	ENST00000335606		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-3CDS	ENST00000342059	ENST00000382072		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000514195		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000382085		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000502637		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000441713		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000426255		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000512079		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
intron-5UTR	ENST00000342059	ENST00000382068		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000382102	ENST00000335606		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000382102	ENST00000382072		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000514195		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000382085		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000502637		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000441713		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000426255		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000512079		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000382102	ENST00000382068		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000509381	ENST00000335606		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000509381	ENST00000382072		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000514195		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000382085		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000502637		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000441713		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000426255		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000512079		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000509381	ENST00000382068		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000345083	ENST00000335606		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
In-frame	ENST00000345083	ENST00000382072		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000514195		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000382085		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000502637		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000441713		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000426255		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000512079		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
5CDS-5UTR	ENST00000345083	ENST00000382068		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	SLC45A2	chr5	33982341	-	AMACR	chr5	34006004	-
Frame-shit	ENST00000417961	ENST00000581396		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000417961	ENST00000379504		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000417961	ENST00000318094		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000417961	ENST00000395739		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000417961	ENST00000535933		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000417961	ENST00000540946		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000417961	ENST00000542206		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000417961	ENST00000478943		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000417961	ENST00000577517		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000361573	ENST00000581396		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000361573	ENST00000379504		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000361573	ENST00000318094		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000361573	ENST00000395739		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
Frame-shit	ENST00000361573	ENST00000535933		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000361573	ENST00000540946		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000361573	ENST00000542206		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000361573	ENST00000478943		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5CDS-intron	ENST00000361573	ENST00000577517		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000541138	ENST00000581396		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000541138	ENST00000379504		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000541138	ENST00000318094		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000541138	ENST00000395739		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000541138	ENST00000535933		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000541138	ENST00000540946		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000541138	ENST00000542206		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000541138	ENST00000478943		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000541138	ENST00000577517		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000539601	ENST00000581396		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000539601	ENST00000379504		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000539601	ENST00000318094		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000539601	ENST00000395739		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-3CDS	ENST00000539601	ENST00000535933		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000539601	ENST00000540946		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000539601	ENST00000542206		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000539601	ENST00000478943		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
5UTR-intron	ENST00000539601	ENST00000577517		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-3CDS	ENST00000490250	ENST00000581396		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-3CDS	ENST00000490250	ENST00000379504		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-3CDS	ENST00000490250	ENST00000318094		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-3CDS	ENST00000490250	ENST00000395739		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-3CDS	ENST00000490250	ENST00000535933		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-intron	ENST00000490250	ENST00000540946		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-intron	ENST00000490250	ENST00000542206		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-intron	ENST00000490250	ENST00000478943		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
intron-intron	ENST00000490250	ENST00000577517		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	SLC9A8	chr20	48431726	+	TOM1L2	chr17	17754266	-
3UTR-5UTR	ENST00000491455	ENST00000370651		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
3UTR-5UTR	ENST00000491455	ENST00000370650		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
3UTR-5UTR	ENST00000491455	ENST00000578299		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
3UTR-3UTR	ENST00000491455	ENST00000473334		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000415093	ENST00000370651		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000415093	ENST00000370650		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000415093	ENST00000578299		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-3UTR	ENST00000415093	ENST00000473334		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000366957	ENST00000370651		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000366957	ENST00000370650		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000366957	ENST00000578299		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-3UTR	ENST00000366957	ENST00000473334		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	SMYD2	chr1	214454770	+	PTP4A1	chr6	64286341	+
5CDS-intron	ENST00000507866	ENST00000382521		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
5CDS-intron	ENST00000507866	ENST00000245105		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
5CDS-intron	ENST00000507866	ENST00000539824		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
5CDS-intron	ENST00000507866	ENST00000514274		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000511199	ENST00000382521		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000511199	ENST00000245105		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000511199	ENST00000539824		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000511199	ENST00000514274		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000329016	ENST00000382521		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000329016	ENST00000245105		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000329016	ENST00000539824		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
intron-intron	ENST00000329016	ENST00000514274		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	SORCS2	chr4	7194853	+	SH3TC1	chr4	8242425	+
Frame-shit	ENST00000225276	ENST00000259008		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ST6GALNAC2	chr17	74574838	-	BRIP1	chr17	59820495	-
Frame-shit	ENST00000225276	ENST00000577598		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ST6GALNAC2	chr17	74574838	-	BRIP1	chr17	59820495	-
5CDS-intron	ENST00000225276	ENST00000583837		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ST6GALNAC2	chr17	74574838	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000586520	ENST00000259008		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ST6GALNAC2	chr17	74574838	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000586520	ENST00000577598		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ST6GALNAC2	chr17	74574838	-	BRIP1	chr17	59820495	-
5UTR-intron	ENST00000586520	ENST00000583837		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ST6GALNAC2	chr17	74574838	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000218089	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-intron	ENST00000218089	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-intron	ENST00000218089	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-intron	ENST00000218089	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
3UTR-3CDS	ENST00000469481	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
3UTR-intron	ENST00000469481	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
3UTR-intron	ENST00000469481	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
3UTR-intron	ENST00000469481	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-3CDS	ENST00000354548	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-intron	ENST00000354548	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-intron	ENST00000354548	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
5UTR-intron	ENST00000354548	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-3CDS	ENST00000371160	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371160	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371160	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371160	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-3CDS	ENST00000371157	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371157	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371157	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371157	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-3CDS	ENST00000371145	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371145	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371145	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371145	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-3CDS	ENST00000371144	ENST00000262844		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371144	ENST00000372059		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371144	ENST00000372057		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
intron-intron	ENST00000371144	ENST00000496695		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	AMMECR1	chrX	109507827	-
Frame-shit	ENST00000367121	ENST00000302328		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367121	ENST00000450244		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367121	ENST00000456224		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367121	ENST00000444237		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367122	ENST00000302328		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367122	ENST00000450244		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367122	ENST00000456224		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000367122	ENST00000444237		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000355585	ENST00000302328		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000355585	ENST00000450244		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000355585	ENST00000456224		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000355585	ENST00000444237		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000449859	ENST00000302328		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000449859	ENST00000450244		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000449859	ENST00000456224		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000449859	ENST00000444237		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
intron-3CDS	ENST00000367112	ENST00000302328		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
intron-3CDS	ENST00000367112	ENST00000450244		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
intron-3CDS	ENST00000367112	ENST00000456224		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
intron-3CDS	ENST00000367112	ENST00000444237		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	SYNJ2	chr6	158483196	+	SCN11A	chr3	38962746	-
Frame-shit	ENST00000536230	ENST00000367463		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000536230	ENST00000466695		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
Frame-shit	ENST00000392282	ENST00000367463		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000392282	ENST00000466695		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
Frame-shit	ENST00000538427	ENST00000367463		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000538427	ENST00000466695		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
Frame-shit	ENST00000367456	ENST00000367463		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000367456	ENST00000466695		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
intron-3CDS	ENST00000461481	ENST00000367463		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
intron-3UTR	ENST00000461481	ENST00000466695		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
Frame-shit	ENST00000286332	ENST00000367463		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000286332	ENST00000466695		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	TAB2	chr6	149700654	+	UST	chr6	149394969	+
5CDS-5UTR	ENST00000301923	ENST00000338754		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000301923	ENST00000398110		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000301923	ENST00000403880		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000402203	ENST00000338754		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000402203	ENST00000398110		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000402203	ENST00000403880		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000454349	ENST00000338754		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000454349	ENST00000398110		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000454349	ENST00000403880		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000335727	ENST00000338754		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000335727	ENST00000398110		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000335727	ENST00000403880		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
intron-5UTR	ENST00000497559	ENST00000338754		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
intron-5UTR	ENST00000497559	ENST00000398110		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
intron-5UTR	ENST00000497559	ENST00000403880		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	TNRC6B	chr22	40647204	+	TPST2	chr22	26940641	-
In-frame	ENST00000536468	ENST00000277551		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000536468	ENST00000371372		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000536468	ENST00000277549		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000536468	ENST00000371363		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000536468	ENST00000371355		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000536468	ENST00000371357		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000536468	ENST00000277550		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000536468	ENST00000371367		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000536468	ENST00000545473		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000536468	ENST00000371365		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000247668	ENST00000277551		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000247668	ENST00000371372		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000247668	ENST00000277549		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000247668	ENST00000371363		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000247668	ENST00000371355		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000247668	ENST00000371357		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000247668	ENST00000277550		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000247668	ENST00000371367		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000247668	ENST00000545473		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000247668	ENST00000371365		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000359662	ENST00000277551		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000359662	ENST00000371372		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000359662	ENST00000277549		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000359662	ENST00000371363		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000359662	ENST00000371355		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
In-frame	ENST00000359662	ENST00000371357		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000359662	ENST00000277550		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000359662	ENST00000371367		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000359662	ENST00000545473		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
5CDS-intron	ENST00000359662	ENST00000371365		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-3CDS	ENST00000482854	ENST00000277551		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-3CDS	ENST00000482854	ENST00000371372		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-3CDS	ENST00000482854	ENST00000277549		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-3CDS	ENST00000482854	ENST00000371363		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-3CDS	ENST00000482854	ENST00000371355		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-3CDS	ENST00000482854	ENST00000371357		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-intron	ENST00000482854	ENST00000277550		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-intron	ENST00000482854	ENST00000371367		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-intron	ENST00000482854	ENST00000545473		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
intron-intron	ENST00000482854	ENST00000371365		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140967940	+
Frame-shit	ENST00000394275	ENST00000559717		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
Frame-shit	ENST00000394275	ENST00000360468		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000394275	ENST00000431652		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000394275	ENST00000430376		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000394275	ENST00000558538		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
Frame-shit	ENST00000418476	ENST00000559717		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
Frame-shit	ENST00000418476	ENST00000360468		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000418476	ENST00000431652		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000418476	ENST00000430376		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000418476	ENST00000558538		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
In-frame	ENST00000553671	ENST00000559717		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
In-frame	ENST00000553671	ENST00000360468		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000553671	ENST00000431652		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000553671	ENST00000430376		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
5CDS-intron	ENST00000553671	ENST00000558538		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	UNC45A	chr15	91486312	+	MAN2A2	chr15	91448481	+
Frame-shit	ENST00000282344	ENST00000346618		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	USP12	chr13	27664020	-	E2F3	chr6	20480077	+
Frame-shit	ENST00000282344	ENST00000535432		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	USP12	chr13	27664020	-	E2F3	chr6	20480077	+
In-frame	ENST00000358220	ENST00000181796		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000378470		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000468747		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000378467		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000378465		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000378458		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000478076		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000378462		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000496330		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000479731		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000358220	ENST00000471815		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
Frame-shit	ENST00000381329	ENST00000181796		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000378470		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000468747		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000378467		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000378465		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000378458		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000478076		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000378462		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000496330		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000479731		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000381329	ENST00000471815		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
In-frame	ENST00000263150	ENST00000181796		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000378470		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000468747		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000378467		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000378465		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000378458		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000478076		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000378462		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000496330		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000479731		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000263150	ENST00000471815		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-3CDS	ENST00000482165	ENST00000181796		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000378470		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000468747		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000378467		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000378465		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000378458		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000478076		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000378462		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000496330		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000479731		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
intron-intron	ENST00000482165	ENST00000471815		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	WDR37	chr10	1142186	+	FAM107B	chr10	14709690	-
5CDS-5UTR	ENST00000401558	ENST00000426997		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000401558	ENST00000432605		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000404992	ENST00000426997		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000404992	ENST00000432605		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000406957	ENST00000426997		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000406957	ENST00000432605		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
intron-5UTR	ENST00000481214	ENST00000426997		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
intron-5UTR	ENST00000481214	ENST00000432605		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61389977	+
5UTR-3CDS	ENST00000307750	ENST00000357248		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-3CDS	ENST00000307750	ENST00000349721		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-3CDS	ENST00000307750	ENST00000382203		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-3CDS	ENST00000307750	ENST00000382194		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-intron	ENST00000307750	ENST00000491574		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-intron	ENST00000307750	ENST00000324954		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-intron	ENST00000307750	ENST00000302401		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-intron	ENST00000307750	ENST00000382186		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
5UTR-intron	ENST00000307750	ENST00000382185		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	ZBTB5	chr9	37465212	-	SMARCA2	chr9	2086829	+
In-frame	ENST00000347230	ENST00000261973		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000347230	ENST00000540173		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000347230	ENST00000527432		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000347230	ENST00000525321		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000347230	ENST00000526754		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
5CDS-intron	ENST00000347230	ENST00000532483		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
intron-3CDS	ENST00000557306	ENST00000261973		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
intron-3CDS	ENST00000557306	ENST00000540173		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
intron-3CDS	ENST00000557306	ENST00000527432		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
intron-3CDS	ENST00000557306	ENST00000525321		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
intron-3CDS	ENST00000557306	ENST00000526754		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
intron-intron	ENST00000557306	ENST00000532483		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000555452	ENST00000261973		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000555452	ENST00000540173		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000555452	ENST00000527432		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000555452	ENST00000525321		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000555452	ENST00000526754		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
5CDS-intron	ENST00000555452	ENST00000532483		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	ZFYVE26	chr14	68282487	-	RBM25	chr14	73554709	+
In-frame	ENST00000300870	ENST00000371839		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
In-frame	ENST00000300870	ENST00000371838		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
In-frame	ENST00000300870	ENST00000371836		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000300870	ENST00000334103		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000300870	ENST00000497451		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
In-frame	ENST00000394846	ENST00000371839		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
In-frame	ENST00000394846	ENST00000371838		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
In-frame	ENST00000394846	ENST00000371836		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000394846	ENST00000334103		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000394846	ENST00000497451		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	ZNF267	chr16	31885290	+	AGBL4	chr1	49332902	-
5CDS-5UTR	ENST00000322927	ENST00000454862		TCGA	RV	BLCA	TCGA-BT-A20J-01A	ZNF335	chr20	44586225	-	ZSWIM3	chr20	44501310	+
5CDS-intron	ENST00000322927	ENST00000255152		TCGA	RV	BLCA	TCGA-BT-A20J-01A	ZNF335	chr20	44586225	-	ZSWIM3	chr20	44501310	+
5CDS-5UTR	ENST00000426788	ENST00000454862		TCGA	RV	BLCA	TCGA-BT-A20J-01A	ZNF335	chr20	44586225	-	ZSWIM3	chr20	44501310	+
5CDS-intron	ENST00000426788	ENST00000255152		TCGA	RV	BLCA	TCGA-BT-A20J-01A	ZNF335	chr20	44586225	-	ZSWIM3	chr20	44501310	+
intron-5UTR	ENST00000494955	ENST00000454862		TCGA	RV	BLCA	TCGA-BT-A20J-01A	ZNF335	chr20	44586225	-	ZSWIM3	chr20	44501310	+
intron-intron	ENST00000494955	ENST00000255152		TCGA	RV	BLCA	TCGA-BT-A20J-01A	ZNF335	chr20	44586225	-	ZSWIM3	chr20	44501310	+
In-frame	ENST00000370205	ENST00000342505		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	ALG14	chr1	95492685	-	JAK1	chr1	65313358	-
5CDS-5UTR	ENST00000370205	ENST00000465376		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	ALG14	chr1	95492685	-	JAK1	chr1	65313358	-
intron-3CDS	ENST00000495856	ENST00000342505		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	ALG14	chr1	95492685	-	JAK1	chr1	65313358	-
intron-5UTR	ENST00000495856	ENST00000465376		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	ALG14	chr1	95492685	-	JAK1	chr1	65313358	-
In-frame	ENST00000393537	ENST00000327896		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ANKRD39	chr2	97519138	-	FAM178B	chr2	97613639	-
In-frame	ENST00000393537	ENST00000417561		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ANKRD39	chr2	97519138	-	FAM178B	chr2	97613639	-
In-frame	ENST00000393537	ENST00000490605		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ANKRD39	chr2	97519138	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000393537	ENST00000393526		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ANKRD39	chr2	97519138	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000393537	ENST00000470789		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ANKRD39	chr2	97519138	-	FAM178B	chr2	97613639	-
Frame-shit	ENST00000481646	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000481646	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000481646	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000481646	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000481646	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000481646	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000481646	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000481646	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000481646	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000469044	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000469044	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000469044	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000469044	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000469044	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000469044	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000469044	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000469044	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000469044	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000491704	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000491704	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000491704	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000491704	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000491704	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000491704	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000491704	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000491704	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000491704	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000358441	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000358441	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000358441	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000358441	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000358441	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000358441	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000358441	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000358441	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000358441	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000489213	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000489213	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000489213	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000489213	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000489213	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000489213	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000489213	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000489213	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000489213	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000461822	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000461822	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000461822	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000461822	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000461822	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000461822	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000461822	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000461822	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000461822	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000485396	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000485396	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000485396	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000485396	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000485396	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000485396	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000485396	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000485396	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000485396	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000471453	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000471453	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000471453	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000471453	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000471453	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000471453	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000471453	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000471453	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000471453	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000470821	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000470821	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000470821	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000470821	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-3CDS	ENST00000470821	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000470821	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000470821	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000470821	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
intron-5UTR	ENST00000470821	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000393058	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000393058	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000393058	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000393058	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000393058	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000393058	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000393058	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000393058	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000393058	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000538260	ENST00000423994		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000538260	ENST00000429770		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000538260	ENST00000435965		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000538260	ENST00000266039		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
Frame-shit	ENST00000538260	ENST00000395083		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000538260	ENST00000360963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000538260	ENST00000424201		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000538260	ENST00000479441		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000538260	ENST00000487413		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	ARMC8	chr3	138007962	+	CACNA2D2	chr3	50513630	-
5CDS-5UTR	ENST00000368346	ENST00000368748		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	ASH1L	chr1	155408118	-	SPRR2G	chr1	153122607	-
5CDS-5UTR	ENST00000392403	ENST00000368748		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	ASH1L	chr1	155408118	-	SPRR2G	chr1	153122607	-
intron-5UTR	ENST00000548830	ENST00000368748		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	ASH1L	chr1	155408118	-	SPRR2G	chr1	153122607	-
In-frame	ENST00000321990	ENST00000222345		TCGA	RV	BLCA	TCGA-DK-A2I6-01A	ATAD5	chr17	29185341	+	SIPA1L3	chr19	38652893	+
5CDS-intron	ENST00000321990	ENST00000476317		TCGA	RV	BLCA	TCGA-DK-A2I6-01A	ATAD5	chr17	29185341	+	SIPA1L3	chr19	38652893	+
5CDS-5UTR	ENST00000311637	ENST00000202028		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000311637	ENST00000373950		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000311637	ENST00000441639		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000311637	ENST00000373946		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000311637	ENST00000338074		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000311637	ENST00000373941		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-intron	ENST00000311637	ENST00000479336		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000338821	ENST00000202028		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000338821	ENST00000373950		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000338821	ENST00000441639		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000338821	ENST00000373946		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000338821	ENST00000338074		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000338821	ENST00000373941		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-intron	ENST00000338821	ENST00000479336		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000402822	ENST00000202028		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000402822	ENST00000373950		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000402822	ENST00000441639		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000402822	ENST00000373946		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000402822	ENST00000338074		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000402822	ENST00000373941		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
5CDS-intron	ENST00000402822	ENST00000479336		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-5UTR	ENST00000477492	ENST00000202028		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-5UTR	ENST00000477492	ENST00000373950		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-5UTR	ENST00000477492	ENST00000441639		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-5UTR	ENST00000477492	ENST00000373946		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-5UTR	ENST00000477492	ENST00000338074		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-5UTR	ENST00000477492	ENST00000373941		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
intron-intron	ENST00000477492	ENST00000479336		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ATP9A	chr20	50329505	-	EPB41L1	chr20	34763473	+
Frame-shit	ENST00000392379	ENST00000297145		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
5CDS-5UTR	ENST00000392379	ENST00000485446		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
In-frame	ENST00000392378	ENST00000297145		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
5CDS-5UTR	ENST00000392378	ENST00000485446		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
In-frame	ENST00000358186	ENST00000297145		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
5CDS-5UTR	ENST00000358186	ENST00000485446		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
intron-3CDS	ENST00000441275	ENST00000297145		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
intron-5UTR	ENST00000441275	ENST00000485446		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
intron-3CDS	ENST00000476764	ENST00000297145		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
intron-5UTR	ENST00000476764	ENST00000485446		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	BDH1	chr3	197273232	-	C7orf60	chr7	112472730	-
5CDS-5UTR	ENST00000389857	ENST00000342745		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000389857	ENST00000553497		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
intron-5UTR	ENST00000331194	ENST00000342745		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
intron-intron	ENST00000331194	ENST00000553497		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5CDS-5UTR	ENST00000389856	ENST00000342745		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000389856	ENST00000553497		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5CDS-5UTR	ENST00000553403	ENST00000342745		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000553403	ENST00000553497		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5UTR-5UTR	ENST00000554165	ENST00000342745		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
5UTR-intron	ENST00000554165	ENST00000553497		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CCDC88C	chr14	91875003	-	KIAA0247	chr14	70125230	+
intron-intron	ENST00000408952	ENST00000264818		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408952	ENST00000524462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408952	ENST00000525621		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408952	ENST00000529370		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408952	ENST00000529422		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400809	ENST00000264818		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400809	ENST00000524462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400809	ENST00000525621		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400809	ENST00000529370		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400809	ENST00000529422		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000505849	ENST00000264818		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000505849	ENST00000524462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000505849	ENST00000525621		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000505849	ENST00000529370		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000505849	ENST00000529422		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408918	ENST00000264818		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408918	ENST00000524462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408918	ENST00000525621		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408918	ENST00000529370		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
intron-intron	ENST00000408918	ENST00000529422		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	CCNL2	chr1	1322093	-	TYK2	chr19	10491352	-
Frame-shit	ENST00000274695	ENST00000263274		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000274695	ENST00000536218		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000274695	ENST00000427526		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
5CDS-intron	ENST00000274695	ENST00000599165		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000378624	ENST00000263274		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000378624	ENST00000536218		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000378624	ENST00000427526		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
5CDS-intron	ENST00000378624	ENST00000599165		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000378610	ENST00000263274		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000378610	ENST00000536218		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
Frame-shit	ENST00000378610	ENST00000427526		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
5CDS-intron	ENST00000378610	ENST00000599165		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
intron-3CDS	ENST00000476517	ENST00000263274		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
intron-3CDS	ENST00000476517	ENST00000536218		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
intron-3CDS	ENST00000476517	ENST00000427526		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
intron-intron	ENST00000476517	ENST00000599165		TCGA	RV	BLCA	TCGA-ZF-A9RF-01A	CDKAL1	chr6	20649608	+	LIG1	chr19	48634428	-
3UTR-intron	ENST00000361570	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000361570	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000361570	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000361570	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000361570	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000361570	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000304494	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000304494	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000304494	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000304494	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000304494	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000304494	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000579755	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000579755	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000579755	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000579755	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000579755	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
3UTR-intron	ENST00000579755	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000579122	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000579122	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000579122	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000579122	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000579122	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000579122	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000578845	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000578845	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000578845	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000578845	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000578845	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000578845	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000530628	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000530628	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000530628	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000530628	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000530628	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000530628	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498124	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498124	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498124	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498124	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498124	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498124	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498628	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498628	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498628	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498628	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498628	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000498628	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000494262	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000494262	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000494262	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000494262	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000494262	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000494262	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000446177	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000446177	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000446177	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000446177	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000446177	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000446177	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000479692	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000479692	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000479692	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000479692	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000479692	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
5CDS-intron	ENST00000479692	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000497750	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000497750	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000497750	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000497750	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000497750	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000497750	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000470819	ENST00000568630		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000470819	ENST00000545763		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000470819	ENST00000389936		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000470819	ENST00000219905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000470819	ENST00000566586		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
intron-intron	ENST00000470819	ENST00000570161		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	CDKN2A	chr9	21970901	-	MGA	chr15	42019378	+
In-frame	ENST00000367607	ENST00000528443		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
In-frame	ENST00000367607	ENST00000271583		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
In-frame	ENST00000367607	ENST00000606911		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
In-frame	ENST00000367607	ENST00000435319		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
5CDS-3UTR	ENST00000367607	ENST00000474875		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000528443		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000271583		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000606911		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
intron-3CDS	ENST00000490141	ENST00000435319		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
intron-3UTR	ENST00000490141	ENST00000474875		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CEP350	chr1	179981210	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000298912	ENST00000335263		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000424963		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000322340		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000499851		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000342702		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000556807		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000558567		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000299135		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000454394		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000556511		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000557186		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
5CDS-intron	ENST00000298912	ENST00000545563		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-3CDS	ENST00000557215	ENST00000335263		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000424963		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000322340		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000499851		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000342702		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000556807		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000558567		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000299135		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000454394		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000556511		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000557186		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000557215	ENST00000545563		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-3CDS	ENST00000556441	ENST00000335263		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000424963		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000322340		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000499851		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000342702		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000556807		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000558567		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000299135		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000454394		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000556511		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000557186		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
intron-intron	ENST00000556441	ENST00000545563		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	CLMN	chr14	95786048	-	WDR20	chr14	102689167	+
3UTR-intron	ENST00000524630	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000524630	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000524630	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000524630	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000529919	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000529919	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000529919	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000529919	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000399039	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000399039	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000399039	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000399039	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000360682	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000360682	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000360682	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000360682	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000361796	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000361796	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000361796	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000361796	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000361391	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000361391	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000361391	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000361391	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000530094	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000530094	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000530094	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000530094	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000428599	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000428599	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000428599	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000428599	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000361332	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000361332	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000361332	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000361332	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000527467	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000527467	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000527467	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000527467	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000415361	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000415361	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000415361	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000415361	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532245	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532245	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532245	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532245	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532463	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532463	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532463	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532463	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000528232	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000528232	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000528232	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000528232	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529986	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529986	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529986	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529986	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000531014	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000531014	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000531014	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000531014	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000358694	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000358694	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000358694	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000358694	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000526772	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000526772	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000526772	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000526772	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532787	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532787	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532787	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532787	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000533667	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000533667	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000533667	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000533667	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529873	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529873	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529873	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529873	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000525902	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000525902	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000525902	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000525902	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529526	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529526	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529526	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529526	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532649	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532649	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532649	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532649	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000426142	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000426142	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000426142	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000426142	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532844	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000532844	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532844	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000532844	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000528621	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000528621	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000528621	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000528621	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000399050	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000399050	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000399050	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000399050	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000526357	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000526357	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000526357	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000526357	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000530748	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000530748	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000530748	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000530748	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000534579	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000534579	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000534579	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000534579	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000526938	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000526938	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000526938	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000526938	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	CTNND1	chr11	57586650	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000328111	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000328111	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000328111	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000328111	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000328111	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000328111	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000328111	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000348286	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000348286	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000348286	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000348286	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000348286	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000348286	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000348286	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000353855	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000353855	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000353855	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000353855	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000353855	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000353855	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000353855	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000443239	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000443239	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000443239	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000443239	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000443239	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000443239	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000443239	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000344505	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000344505	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000344505	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000344505	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000344505	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000344505	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000344505	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000375623	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000375623	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000375623	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000375623	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000375623	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000375623	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000375623	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000456297	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000456297	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000456297	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000456297	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000456297	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000456297	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000456297	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
In-frame	ENST00000201963	ENST00000278979		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000201963	ENST00000398083		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000201963	ENST00000486996		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000201963	ENST00000398084		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000201963	ENST00000375966		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000201963	ENST00000339738		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000201963	ENST00000493115		TCGA	RV	BLCA	TCGA-K4-A3WS-01A	DNMT3B	chr20	31376818	+	DUSP15	chr20	30457400	-
5CDS-3UTR	ENST00000405015	ENST00000472729		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405015	ENST00000311832		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405015	ENST00000538736		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000472729		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000311832		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000538736		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000472729		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000311832		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000538736		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000472729		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000311832		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000538736		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000472729		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000311832		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000538736		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000472729		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000311832		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000538736		TCGA	RV	BLCA	TCGA-GV-A40E-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62227836	+
In-frame	ENST00000396153	ENST00000371730		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
In-frame	ENST00000396153	ENST00000371733		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000396153	ENST00000396122		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000396153	ENST00000493793		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
Frame-shit	ENST00000371778	ENST00000371730		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
Frame-shit	ENST00000371778	ENST00000371733		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000371778	ENST00000396122		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000371778	ENST00000493793		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000545823	ENST00000371730		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000545823	ENST00000371733		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-intron	ENST00000545823	ENST00000396122		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-intron	ENST00000545823	ENST00000493793		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000472808	ENST00000371730		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000472808	ENST00000371733		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-intron	ENST00000472808	ENST00000396122		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
intron-intron	ENST00000472808	ENST00000493793		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	FAF1	chr1	51171458	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000583610	ENST00000540723		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000583610	ENST00000301656		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000394294	ENST00000540723		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000394294	ENST00000301656		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000264658	ENST00000540723		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000264658	ENST00000301656		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000577399	ENST00000540723		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-intron	ENST00000577399	ENST00000301656		TCGA	RV	BLCA	TCGA-FD-A62S-01A	FBXL20	chr17	37437642	-	KRT27	chr17	38936113	-
5CDS-3UTR	ENST00000427718	ENST00000550385		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
5CDS-3UTR	ENST00000427718	ENST00000229266		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
5CDS-3UTR	ENST00000427718	ENST00000549872		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
5CDS-3UTR	ENST00000330622	ENST00000550385		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
5CDS-3UTR	ENST00000330622	ENST00000229266		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
5CDS-3UTR	ENST00000330622	ENST00000549872		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
intron-3UTR	ENST00000549689	ENST00000550385		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
intron-3UTR	ENST00000549689	ENST00000229266		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
intron-3UTR	ENST00000549689	ENST00000549872		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	FBXO21	chr12	117593596	-	CHPT1	chr12	102107868	+
In-frame	ENST00000307968	ENST00000231454		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	FNIP1	chr5	131132523	-	IL5	chr5	131878818	-
In-frame	ENST00000307954	ENST00000231454		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	FNIP1	chr5	131132523	-	IL5	chr5	131878818	-
In-frame	ENST00000510461	ENST00000231454		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	FNIP1	chr5	131132523	-	IL5	chr5	131878818	-
In-frame	ENST00000511848	ENST00000231454		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	FNIP1	chr5	131132523	-	IL5	chr5	131878818	-
5CDS-3UTR	ENST00000422223	ENST00000488819		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000422223	ENST00000444090		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000422223	ENST00000441662		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000422223	ENST00000368043		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000422223	ENST00000368042		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000422223	ENST00000458602		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000422223	ENST00000458104		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000422223	ENST00000359331		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380881	ENST00000488819		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380881	ENST00000444090		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380881	ENST00000441662		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380881	ENST00000368043		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380881	ENST00000368042		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380881	ENST00000458602		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380881	ENST00000458104		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380881	ENST00000359331		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380880	ENST00000488819		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380880	ENST00000444090		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380880	ENST00000441662		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-3UTR	ENST00000380880	ENST00000368043		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380880	ENST00000368042		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380880	ENST00000458602		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380880	ENST00000458104		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5CDS-intron	ENST00000380880	ENST00000359331		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000380894	ENST00000488819		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000380894	ENST00000444090		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000380894	ENST00000441662		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000380894	ENST00000368043		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000380894	ENST00000368042		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000380894	ENST00000458602		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000380894	ENST00000458104		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000380894	ENST00000359331		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000486223	ENST00000488819		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000486223	ENST00000444090		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000486223	ENST00000441662		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000486223	ENST00000368043		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000486223	ENST00000368042		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000486223	ENST00000458602		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000486223	ENST00000458104		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
intron-intron	ENST00000486223	ENST00000359331		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	FREM1	chr9	14851282	-	SLAMF7	chr1	160717984	+
5UTR-3CDS	ENST00000422223	ENST00000396787		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000422223	ENST00000378495		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000422223	ENST00000378496		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-intron	ENST00000422223	ENST00000481299		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000380881	ENST00000396787		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000380881	ENST00000378495		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000380881	ENST00000378496		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-intron	ENST00000380881	ENST00000481299		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000380880	ENST00000396787		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000380880	ENST00000378495		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-3CDS	ENST00000380880	ENST00000378496		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
5UTR-intron	ENST00000380880	ENST00000481299		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-3CDS	ENST00000380894	ENST00000396787		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-3CDS	ENST00000380894	ENST00000378495		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-3CDS	ENST00000380894	ENST00000378496		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-intron	ENST00000380894	ENST00000481299		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-3CDS	ENST00000486223	ENST00000396787		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-3CDS	ENST00000486223	ENST00000378495		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-3CDS	ENST00000486223	ENST00000378496		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
intron-intron	ENST00000486223	ENST00000481299		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FREM1	chr9	14909912	-	UNC13B	chr9	35228012	+
In-frame	ENST00000265342	ENST00000200652		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	FSTL4	chr5	132902877	-	SLC22A4	chr5	131679453	+
5CDS-intron	ENST00000265342	ENST00000491257		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	FSTL4	chr5	132902877	-	SLC22A4	chr5	131679453	+
intron-3CDS	ENST00000507112	ENST00000200652		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	FSTL4	chr5	132902877	-	SLC22A4	chr5	131679453	+
intron-intron	ENST00000507112	ENST00000491257		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	FSTL4	chr5	132902877	-	SLC22A4	chr5	131679453	+
Frame-shit	ENST00000204726	ENST00000245923		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-intron	ENST00000204726	ENST00000430715		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-intron	ENST00000204726	ENST00000344680		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-5UTR	ENST00000204726	ENST00000590526		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-5UTR	ENST00000204726	ENST00000589384		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
Frame-shit	ENST00000450791	ENST00000245923		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-intron	ENST00000450791	ENST00000430715		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-intron	ENST00000450791	ENST00000344680		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-5UTR	ENST00000450791	ENST00000590526		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-5UTR	ENST00000450791	ENST00000589384		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
Frame-shit	ENST00000456883	ENST00000245923		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-intron	ENST00000456883	ENST00000430715		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-intron	ENST00000456883	ENST00000344680		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-5UTR	ENST00000456883	ENST00000590526		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5CDS-5UTR	ENST00000456883	ENST00000589384		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-3CDS	ENST00000537452	ENST00000245923		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-intron	ENST00000537452	ENST00000430715		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-intron	ENST00000537452	ENST00000344680		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-5UTR	ENST00000537452	ENST00000590526		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-5UTR	ENST00000537452	ENST00000589384		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-3CDS	ENST00000545875	ENST00000245923		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-intron	ENST00000545875	ENST00000430715		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-intron	ENST00000545875	ENST00000344680		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-5UTR	ENST00000545875	ENST00000590526		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-5UTR	ENST00000545875	ENST00000589384		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-3CDS	ENST00000534967	ENST00000245923		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-intron	ENST00000534967	ENST00000430715		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-intron	ENST00000534967	ENST00000344680		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-5UTR	ENST00000534967	ENST00000590526		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
intron-5UTR	ENST00000534967	ENST00000589384		TCGA	RV	BLCA	TCGA-XF-A9T3-01A	GOLGA3	chr12	133353220	-	RTN2	chr19	45998397	-
5UTR-3CDS	ENST00000371253	ENST00000230588		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	GPR110	chr6	47009927	-	MEP1A	chr6	46800811	+
intron-3CDS	ENST00000449332	ENST00000230588		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	GPR110	chr6	47009927	-	MEP1A	chr6	46800811	+
intron-3CDS	ENST00000283297	ENST00000230588		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	GPR110	chr6	47009927	-	MEP1A	chr6	46800811	+
5UTR-3CDS	ENST00000371243	ENST00000230588		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	GPR110	chr6	47009927	-	MEP1A	chr6	46800811	+
5UTR-3CDS	ENST00000372583	ENST00000372565		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
5UTR-3CDS	ENST00000372583	ENST00000433602		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
5UTR-intron	ENST00000372583	ENST00000475426		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
5UTR-3CDS	ENST00000372584	ENST00000372565		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
5UTR-3CDS	ENST00000372584	ENST00000433602		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
5UTR-intron	ENST00000372584	ENST00000475426		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000247584	ENST00000372565		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000247584	ENST00000433602		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-intron	ENST00000247584	ENST00000475426		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000429157	ENST00000372565		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000429157	ENST00000433602		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-intron	ENST00000429157	ENST00000475426		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000460604	ENST00000372565		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000460604	ENST00000433602		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
intron-intron	ENST00000460604	ENST00000475426		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	HIVEP3	chr1	42384084	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000503427	ENST00000360453		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-3UTR	ENST00000503427	ENST00000394320		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-intron	ENST00000503427	ENST00000461780		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-intron	ENST00000503427	ENST00000309241		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-intron	ENST00000503427	ENST00000403750		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
Frame-shit	ENST00000502717	ENST00000360453		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-3UTR	ENST00000502717	ENST00000394320		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-intron	ENST00000502717	ENST00000461780		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-intron	ENST00000502717	ENST00000309241		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-intron	ENST00000502717	ENST00000403750		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HMGXB3	chr5	149412166	+	PPARGC1B	chr5	149227021	+
5CDS-5UTR	ENST00000298556	ENST00000395905		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	HPRT1	chrX	133620560	+	LRRC2	chr3	46593100	-
5CDS-5UTR	ENST00000298556	ENST00000296144		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	HPRT1	chrX	133620560	+	LRRC2	chr3	46593100	-
5CDS-intron	ENST00000298556	ENST00000496388		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	HPRT1	chrX	133620560	+	LRRC2	chr3	46593100	-
3UTR-5UTR	ENST00000462974	ENST00000395905		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	HPRT1	chrX	133620560	+	LRRC2	chr3	46593100	-
3UTR-5UTR	ENST00000462974	ENST00000296144		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	HPRT1	chrX	133620560	+	LRRC2	chr3	46593100	-
3UTR-intron	ENST00000462974	ENST00000496388		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	HPRT1	chrX	133620560	+	LRRC2	chr3	46593100	-
5CDS-5UTR	ENST00000395762	ENST00000361439		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-intron	ENST00000395762	ENST00000565384		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-5UTR	ENST00000543915	ENST00000361439		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-intron	ENST00000543915	ENST00000565384		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-5UTR	ENST00000449195	ENST00000361439		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-intron	ENST00000449195	ENST00000565384		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-5UTR	ENST00000380922	ENST00000361439		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-intron	ENST00000380922	ENST00000565384		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-5UTR	ENST00000170630	ENST00000361439		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
5CDS-intron	ENST00000170630	ENST00000565384		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
intron-5UTR	ENST00000565915	ENST00000361439		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
intron-intron	ENST00000565915	ENST00000565384		TCGA	RV	BLCA	TCGA-GU-A42P-01A	IL4R	chr16	27357939	+	NSMCE1	chr16	27268902	-
Frame-shit	ENST00000225916	ENST00000293328		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	KAT2A	chr17	40269053	-	STAT5B	chr17	40354826	-
5CDS-intron	ENST00000524189	ENST00000413292		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64693320	+
5CDS-intron	ENST00000524189	ENST00000164133		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000521515	ENST00000413292		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000521515	ENST00000164133		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000404075	ENST00000413292		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000404075	ENST00000164133		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64693320	+
5CDS-5UTR	ENST00000232766	ENST00000434410		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
5CDS-5UTR	ENST00000232766	ENST00000232854		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
5CDS-5UTR	ENST00000232766	ENST00000455834		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
5UTR-5UTR	ENST00000455924	ENST00000434410		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
5UTR-5UTR	ENST00000455924	ENST00000232854		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
5UTR-5UTR	ENST00000455924	ENST00000455834		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
3UTR-5UTR	ENST00000483201	ENST00000434410		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
3UTR-5UTR	ENST00000483201	ENST00000232854		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
3UTR-5UTR	ENST00000483201	ENST00000455834		TCGA	RV	BLCA	TCGA-DK-A3IQ-01A	KLHL18	chr3	47324584	+	HEMK1	chr3	50608362	+
5CDS-intron	ENST00000326639	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000326639	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000326639	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000264584	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000264584	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000264584	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000441387	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000441387	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000441387	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5UTR-intron	ENST00000354456	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5UTR-intron	ENST00000354456	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5UTR-intron	ENST00000354456	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
intron-intron	ENST00000506199	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
intron-intron	ENST00000506199	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
intron-intron	ENST00000506199	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000512292	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000512292	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000512292	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000394288	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000394288	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000394288	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000432347	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000432347	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000432347	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000427266	ENST00000398965		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000427266	ENST00000444616		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
5CDS-intron	ENST00000427266	ENST00000388795		TCGA	RV	BLCA	TCGA-XF-A9SP-01A	LARP1B	chr4	129012667	+	C4orf29	chr4	128956917	+
In-frame	ENST00000550929	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000550929	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000550929	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000550929	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000550929	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000550929	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000550929	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000262055	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000262055	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000262055	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000262055	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000262055	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000262055	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000262055	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000380123	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000380123	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000380123	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000380123	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000380123	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000380123	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000380123	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000418425	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000418425	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000418425	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000418425	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000418425	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000418425	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000418425	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000547008	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000547008	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000547008	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
In-frame	ENST00000547008	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000547008	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000547008	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
5CDS-intron	ENST00000547008	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000552739	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000552739	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000552739	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000552739	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000552739	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000552739	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000552739	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000548516	ENST00000293618		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000548516	ENST00000429001		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000548516	ENST00000398473		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-3CDS	ENST00000548516	ENST00000518444		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000548516	ENST00000347328		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000548516	ENST00000522085		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
intron-intron	ENST00000548516	ENST00000518561		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	LETMD1	chr12	51445990	+	LARP4	chr12	50847243	+
Frame-shit	ENST00000266674	ENST00000283228		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000266674	ENST00000440835		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000266674	ENST00000537619		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000266674	ENST00000378778		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000266674	ENST00000342084		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000266674	ENST00000549308		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000536515	ENST00000283228		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000536515	ENST00000440835		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000536515	ENST00000537619		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000536515	ENST00000378778		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000536515	ENST00000342084		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000536515	ENST00000549308		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000540815	ENST00000283228		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000540815	ENST00000440835		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000540815	ENST00000537619		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000540815	ENST00000378778		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000540815	ENST00000342084		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000540815	ENST00000549308		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71898465	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000255681	ENST00000377559		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
Frame-shit	ENST00000255681	ENST00000265459		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
Frame-shit	ENST00000255681	ENST00000301894		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
Frame-shit	ENST00000255681	ENST00000377551		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
In-frame	ENST00000255681	ENST00000409571		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5CDS-intron	ENST00000255681	ENST00000496291		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5UTR-3CDS	ENST00000538595	ENST00000377559		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5UTR-3CDS	ENST00000538595	ENST00000265459		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5UTR-3CDS	ENST00000538595	ENST00000301894		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5UTR-3CDS	ENST00000538595	ENST00000377551		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5UTR-3CDS	ENST00000538595	ENST00000409571		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5UTR-intron	ENST00000538595	ENST00000496291		TCGA	RV	BLCA	TCGA-BT-A20W-01A	MACROD1	chr11	63918711	-	NRXN2	chr11	64375554	-
5CDS-5UTR	ENST00000440884	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000440884	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000440884	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000416682	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000416682	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000416682	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000429436	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000429436	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000429436	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000303622	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000303622	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000303622	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000216288	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000216288	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000216288	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000553942	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000553942	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000553942	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000335102	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000335102	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000335102	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
intron-5UTR	ENST00000561071	ENST00000299204		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
intron-5UTR	ENST00000561071	ENST00000445922		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
intron-5UTR	ENST00000561071	ENST00000337322		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MARK3	chr14	103934523	+	BAG5	chr14	104027529	-
In-frame	ENST00000536774	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000536774	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000536774	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000536774	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000536774	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000536774	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000536774	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000536774	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000327441	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000327441	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000539062	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000539062	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000556451	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000556451	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000396294	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000396294	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000545536	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000545536	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000537471	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000537471	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000604948		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000557565		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000250377		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000321130		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000534898		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000603544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000539174	ENST00000605870		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000539174	ENST00000603588		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35735933	+
Frame-shit	ENST00000416426	ENST00000394688		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000416426	ENST00000394689		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
5CDS-intron	ENST00000416426	ENST00000401491		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000284073	ENST00000394688		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000284073	ENST00000394689		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
5CDS-intron	ENST00000284073	ENST00000401491		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000322684	ENST00000394688		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000322684	ENST00000394689		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
5CDS-intron	ENST00000322684	ENST00000401491		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000442934	ENST00000394688		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000442934	ENST00000394689		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
5CDS-intron	ENST00000442934	ENST00000401491		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000579180	ENST00000394688		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
Frame-shit	ENST00000579180	ENST00000394689		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
5CDS-intron	ENST00000579180	ENST00000401491		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
3UTR-3CDS	ENST00000579505	ENST00000394688		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
3UTR-3CDS	ENST00000579505	ENST00000394689		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
3UTR-intron	ENST00000579505	ENST00000401491		TCGA	RV	BLCA	TCGA-DK-AA76-01A	MSI2	chr17	55607085	+	BRD7	chr16	50355949	-
5UTR-intron	ENST00000354329	ENST00000582674		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000354329	ENST00000328381		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000354329	ENST00000443677		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000354329	ENST00000324689		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000354329	ENST00000535306		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000529578	ENST00000582674		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000529578	ENST00000328381		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000529578	ENST00000443677		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000529578	ENST00000324689		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000529578	ENST00000535306		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000533112	ENST00000582674		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000533112	ENST00000328381		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000533112	ENST00000443677		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000533112	ENST00000324689		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
intron-intron	ENST00000533112	ENST00000535306		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000531253	ENST00000582674		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000531253	ENST00000328381		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000531253	ENST00000443677		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000531253	ENST00000324689		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000531253	ENST00000535306		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000527372	ENST00000582674		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000527372	ENST00000328381		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000527372	ENST00000443677		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000527372	ENST00000324689		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5UTR-intron	ENST00000527372	ENST00000535306		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MYO18A	chr17	27507331	-	RNF135	chr17	29311635	+
5CDS-intron	ENST00000534548	ENST00000534815		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
5CDS-5UTR	ENST00000534548	ENST00000526793		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
5CDS-5UTR	ENST00000534548	ENST00000531837		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
5CDS-5UTR	ENST00000534548	ENST00000531482		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-intron	ENST00000526787	ENST00000534815		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-5UTR	ENST00000526787	ENST00000526793		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-5UTR	ENST00000526787	ENST00000531837		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-5UTR	ENST00000526787	ENST00000531482		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-intron	ENST00000526422	ENST00000534815		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-5UTR	ENST00000526422	ENST00000526793		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-5UTR	ENST00000526422	ENST00000531837		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-5UTR	ENST00000526422	ENST00000531482		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	NCAPD3	chr11	134062584	-	KBTBD3	chr11	105929836	-
intron-3CDS	ENST00000377122	ENST00000378847		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000377122	ENST00000487696		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000377122	ENST00000378845		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
In-frame	ENST00000417816	ENST00000378847		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
5CDS-intron	ENST00000417816	ENST00000487696		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
5CDS-intron	ENST00000417816	ENST00000378845		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-3CDS	ENST00000377159	ENST00000378847		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000377159	ENST00000487696		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000377159	ENST00000378845		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-3CDS	ENST00000377119	ENST00000378847		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000377119	ENST00000487696		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000377119	ENST00000378845		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-3CDS	ENST00000464278	ENST00000378847		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000464278	ENST00000487696		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
intron-intron	ENST00000464278	ENST00000378845		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	NEBL	chr10	21461312	-	CAMK1D	chr10	12595224	+
Frame-shit	ENST00000530878	ENST00000367800		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
Frame-shit	ENST00000530878	ENST00000457866		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
Frame-shit	ENST00000530878	ENST00000417892		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000530878	ENST00000327035		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000530878	ENST00000488690		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000530878	ENST00000367798		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000530878	ENST00000528103		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000530878	ENST00000534469		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000530878	ENST00000531527		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
Frame-shit	ENST00000361897	ENST00000367800		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
Frame-shit	ENST00000361897	ENST00000457866		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
Frame-shit	ENST00000361897	ENST00000417892		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000361897	ENST00000327035		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000361897	ENST00000488690		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000361897	ENST00000367798		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000361897	ENST00000528103		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000361897	ENST00000534469		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
5CDS-intron	ENST00000361897	ENST00000531527		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-3CDS	ENST00000493151	ENST00000367800		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-3CDS	ENST00000493151	ENST00000457866		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-3CDS	ENST00000493151	ENST00000417892		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000493151	ENST00000327035		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000493151	ENST00000488690		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000493151	ENST00000367798		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000493151	ENST00000528103		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000493151	ENST00000534469		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000493151	ENST00000531527		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-3CDS	ENST00000454693	ENST00000367800		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-3CDS	ENST00000454693	ENST00000457866		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-3CDS	ENST00000454693	ENST00000417892		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000454693	ENST00000327035		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000454693	ENST00000488690		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000454693	ENST00000367798		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000454693	ENST00000528103		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000454693	ENST00000534469		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
intron-intron	ENST00000454693	ENST00000531527		TCGA	RV	BLCA	TCGA-E7-A541-01A	NOS1AP	chr1	162124266	+	AHI1	chr6	135679325	-
Frame-shit	ENST00000346365	ENST00000536252		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000346365	ENST00000545103		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000346365	ENST00000540348		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000346365	ENST00000543944		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000346365	ENST00000297661		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
5CDS-intron	ENST00000346365	ENST00000379186		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
5CDS-intron	ENST00000346365	ENST00000359544		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379158	ENST00000536252		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379158	ENST00000545103		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379158	ENST00000540348		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379158	ENST00000543944		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379158	ENST00000297661		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
5CDS-intron	ENST00000379158	ENST00000379186		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
5CDS-intron	ENST00000379158	ENST00000359544		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379155	ENST00000536252		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379155	ENST00000545103		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379155	ENST00000540348		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379155	ENST00000543944		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
Frame-shit	ENST00000379155	ENST00000297661		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
5CDS-intron	ENST00000379155	ENST00000379186		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
5CDS-intron	ENST00000379155	ENST00000359544		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	NUDT2	chr9	34339164	+	UBAP1	chr9	34249777	+
In-frame	ENST00000508632	ENST00000381538		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
In-frame	ENST00000508632	ENST00000507489		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
In-frame	ENST00000508632	ENST00000329043		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
5UTR-3CDS	ENST00000508069	ENST00000381538		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
5UTR-3CDS	ENST00000508069	ENST00000507489		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
5UTR-3CDS	ENST00000508069	ENST00000329043		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
In-frame	ENST00000273860	ENST00000381538		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
In-frame	ENST00000273860	ENST00000507489		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
In-frame	ENST00000273860	ENST00000329043		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	OCIAD2	chr4	48896023	-	NFXL1	chr4	47898664	-
5UTR-3CDS	ENST00000220597	ENST00000297591		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
5UTR-3CDS	ENST00000220597	ENST00000437199		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
5UTR-3CDS	ENST00000220597	ENST00000421249		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
5UTR-intron	ENST00000220597	ENST00000523405		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
intron-3CDS	ENST00000523463	ENST00000297591		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
intron-3CDS	ENST00000523463	ENST00000437199		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
intron-3CDS	ENST00000523463	ENST00000421249		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
intron-intron	ENST00000523463	ENST00000523405		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	PAG1	chr8	81942231	-	KIAA1429	chr8	95527179	-
Frame-shit	ENST00000317096	ENST00000334444		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
Frame-shit	ENST00000317096	ENST00000265586		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000317096	ENST00000492216		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000317096	ENST00000427120		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000317096	ENST00000392579		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000317096	ENST00000382494		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000317096	ENST00000446941		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
Frame-shit	ENST00000311101	ENST00000334444		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
Frame-shit	ENST00000311101	ENST00000265586		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000311101	ENST00000492216		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000311101	ENST00000427120		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000311101	ENST00000392579		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000311101	ENST00000382494		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000311101	ENST00000446941		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
Frame-shit	ENST00000435888	ENST00000334444		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
Frame-shit	ENST00000435888	ENST00000265586		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000435888	ENST00000492216		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000435888	ENST00000427120		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000435888	ENST00000392579		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000435888	ENST00000382494		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
5CDS-intron	ENST00000435888	ENST00000446941		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	PARL	chr3	183602510	-	ABCC5	chr3	183655848	-
3UTR-5UTR	ENST00000359282	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000359282	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000359282	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000359282	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000359282	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000603815	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000603815	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000603815	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000603815	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000603815	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000437231	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000437231	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000437231	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000437231	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000437231	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000447282	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000447282	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000447282	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000447282	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000447282	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000549863	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000549863	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000549863	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000549863	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000549863	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000359462	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000359462	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000359462	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000359462	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000359462	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
5CDS-5UTR	ENST00000546463	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
5CDS-5UTR	ENST00000546463	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
5CDS-intron	ENST00000546463	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
5CDS-5UTR	ENST00000546463	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
5CDS-intron	ENST00000546463	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000552296	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000552296	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000552296	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000552296	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000552296	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000552819	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000552819	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000552819	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000552819	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000552819	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000455667	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000455667	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000455667	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-5UTR	ENST00000455667	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
3UTR-intron	ENST00000455667	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000439930	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000439930	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000439930	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000439930	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000439930	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000548933	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000548933	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000548933	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000548933	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000548933	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000541275	ENST00000264335		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000541275	ENST00000571732		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000541275	ENST00000573026		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000541275	ENST00000575977		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
intron-intron	ENST00000541275	ENST00000498643		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	PCBP2	chr12	53873467	+	YWHAE	chr17	1303494	-
Frame-shit	ENST00000215904	ENST00000370351		TCGA	RV	BLCA	TCGA-GV-A40G-01A	PDXP	chr22	38055363	+	SLC17A9	chr20	61588117	+
Frame-shit	ENST00000215904	ENST00000370349		TCGA	RV	BLCA	TCGA-GV-A40G-01A	PDXP	chr22	38055363	+	SLC17A9	chr20	61588117	+
5CDS-3UTR	ENST00000215904	ENST00000488738		TCGA	RV	BLCA	TCGA-GV-A40G-01A	PDXP	chr22	38055363	+	SLC17A9	chr20	61588117	+
intron-3CDS	ENST00000403251	ENST00000370351		TCGA	RV	BLCA	TCGA-GV-A40G-01A	PDXP	chr22	38055363	+	SLC17A9	chr20	61588117	+
intron-3CDS	ENST00000403251	ENST00000370349		TCGA	RV	BLCA	TCGA-GV-A40G-01A	PDXP	chr22	38055363	+	SLC17A9	chr20	61588117	+
intron-3UTR	ENST00000403251	ENST00000488738		TCGA	RV	BLCA	TCGA-GV-A40G-01A	PDXP	chr22	38055363	+	SLC17A9	chr20	61588117	+
3UTR-5UTR	ENST00000536985	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
3UTR-intron	ENST00000536985	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
3UTR-intron	ENST00000536985	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
3UTR-intron	ENST00000536985	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000379789	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379789	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379789	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379789	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000540253	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000540253	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000540253	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000540253	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000317350	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000317350	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000317350	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000317350	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000379785	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379785	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379785	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379785	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000379782	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379782	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379782	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379782	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000360521	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000360521	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000360521	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000360521	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000379775	ENST00000434459		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379775	ENST00000477661		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379775	ENST00000380872		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000379775	ENST00000380859		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PFKFB3	chr10	6268328	+	AKR1C1	chr10	4950543	+
5CDS-3UTR	ENST00000494598	ENST00000311075		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-intron	ENST00000494598	ENST00000497378		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-3UTR	ENST00000460012	ENST00000311075		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-intron	ENST00000460012	ENST00000497378		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-3UTR	ENST00000447496	ENST00000311075		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-intron	ENST00000447496	ENST00000497378		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-3UTR	ENST00000340059	ENST00000311075		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-intron	ENST00000340059	ENST00000497378		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-3UTR	ENST00000414191	ENST00000311075		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-intron	ENST00000414191	ENST00000497378		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-3UTR	ENST00000334686	ENST00000311075		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-intron	ENST00000334686	ENST00000497378		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PLCH1	chr3	155282704	-	MUC13	chr3	124625589	-
5CDS-5UTR	ENST00000379068	ENST00000379211		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	POLA1	chrX	24948666	+	CXorf58	chrX	23928400	+
5CDS-5UTR	ENST00000379059	ENST00000379211		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	POLA1	chrX	24948666	+	CXorf58	chrX	23928400	+
intron-5UTR	ENST00000493342	ENST00000379211		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	POLA1	chrX	24948666	+	CXorf58	chrX	23928400	+
Frame-shit	ENST00000261207	ENST00000552864		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	PPP1R12A	chr12	80214554	-	LIN7A	chr12	81283148	-
Frame-shit	ENST00000450142	ENST00000552864		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	PPP1R12A	chr12	80214554	-	LIN7A	chr12	81283148	-
Frame-shit	ENST00000437004	ENST00000552864		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	PPP1R12A	chr12	80214554	-	LIN7A	chr12	81283148	-
In-frame	ENST00000546369	ENST00000552864		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	PPP1R12A	chr12	80214554	-	LIN7A	chr12	81283148	-
Frame-shit	ENST00000550107	ENST00000552864		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	PPP1R12A	chr12	80214554	-	LIN7A	chr12	81283148	-
5CDS-5UTR	ENST00000448150	ENST00000333279		TCGA	RV	BLCA	TCGA-XF-A9T8-01A	RASAL2	chr1	178359341	+	ANKRD45	chr1	173628572	-
5CDS-5UTR	ENST00000367649	ENST00000333279		TCGA	RV	BLCA	TCGA-XF-A9T8-01A	RASAL2	chr1	178359341	+	ANKRD45	chr1	173628572	-
intron-5UTR	ENST00000465723	ENST00000333279		TCGA	RV	BLCA	TCGA-XF-A9T8-01A	RASAL2	chr1	178359341	+	ANKRD45	chr1	173628572	-
5CDS-5UTR	ENST00000462775	ENST00000333279		TCGA	RV	BLCA	TCGA-XF-A9T8-01A	RASAL2	chr1	178359341	+	ANKRD45	chr1	173628572	-
Frame-shit	ENST00000357387	ENST00000303230		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	RICTOR	chr5	39074213	-	HCN1	chr5	45645710	-
Frame-shit	ENST00000296782	ENST00000303230		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	RICTOR	chr5	39074213	-	HCN1	chr5	45645710	-
intron-3CDS	ENST00000503698	ENST00000303230		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	RICTOR	chr5	39074213	-	HCN1	chr5	45645710	-
5CDS-5UTR	ENST00000341084	ENST00000520552		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000341084	ENST00000335659		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000341084	ENST00000519597		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000341084	ENST00000520311		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000341084	ENST00000519316		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-intron	ENST00000341084	ENST00000524319		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000519449	ENST00000520552		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000519449	ENST00000335659		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000519449	ENST00000519597		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000519449	ENST00000520311		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-5UTR	ENST00000519449	ENST00000519316		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
5CDS-intron	ENST00000519449	ENST00000524319		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000523255	ENST00000520552		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000523255	ENST00000335659		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000523255	ENST00000519597		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000523255	ENST00000520311		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000523255	ENST00000519316		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-intron	ENST00000523255	ENST00000524319		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	RNF19A	chr8	101299729	-	ANKRD46	chr8	101542088	-
intron-3CDS	ENST00000550067	ENST00000261637		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	SCYL2	chr12	100691953	+	UTP20	chr12	101750704	+
Frame-shit	ENST00000360820	ENST00000261637		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	SCYL2	chr12	100691953	+	UTP20	chr12	101750704	+
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000369764		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000369764		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000395601	ENST00000543949		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000395601	ENST00000342660		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000395601	ENST00000292579		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000395601	ENST00000417550		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000517992	ENST00000543949		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000517992	ENST00000342660		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000517992	ENST00000292579		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5CDS-5UTR	ENST00000517992	ENST00000417550		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
intron-5UTR	ENST00000519177	ENST00000543949		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
intron-5UTR	ENST00000519177	ENST00000342660		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
intron-5UTR	ENST00000519177	ENST00000292579		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
intron-5UTR	ENST00000519177	ENST00000417550		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SNTB1	chr8	121561002	-	ZNF250	chr8	146115788	-
5UTR-3CDS	ENST00000336308	ENST00000580825		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000336308	ENST00000254079		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000336308	ENST00000579000		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000336308	ENST00000394265		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000336308	ENST00000394267		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
3UTR-3CDS	ENST00000578232	ENST00000580825		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
3UTR-3CDS	ENST00000578232	ENST00000254079		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
3UTR-3CDS	ENST00000578232	ENST00000579000		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
3UTR-5UTR	ENST00000578232	ENST00000394265		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
3UTR-5UTR	ENST00000578232	ENST00000394267		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000544210	ENST00000580825		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000544210	ENST00000254079		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000544210	ENST00000579000		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000544210	ENST00000394265		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000544210	ENST00000394267		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000394250	ENST00000580825		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000394250	ENST00000254079		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000394250	ENST00000579000		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000394250	ENST00000394265		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000394250	ENST00000394267		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000580611	ENST00000580825		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000580611	ENST00000254079		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000580611	ENST00000579000		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000580611	ENST00000394265		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000580611	ENST00000394267		TCGA	RV	BLCA	TCGA-XF-A9SW-01A	STARD3	chr17	37793484	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000337288	ENST00000319331		TCGA	RV	BLCA	TCGA-KQ-A41P-01A	STARD7	chr2	96858980	-	LRRN1	chr3	3886048	+
5CDS-3UTR	ENST00000337288	ENST00000496115		TCGA	RV	BLCA	TCGA-KQ-A41P-01A	STARD7	chr2	96858980	-	LRRN1	chr3	3886048	+
intron-5UTR	ENST00000462501	ENST00000319331		TCGA	RV	BLCA	TCGA-KQ-A41P-01A	STARD7	chr2	96858980	-	LRRN1	chr3	3886048	+
intron-3UTR	ENST00000462501	ENST00000496115		TCGA	RV	BLCA	TCGA-KQ-A41P-01A	STARD7	chr2	96858980	-	LRRN1	chr3	3886048	+
In-frame	ENST00000355683	ENST00000430083		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	STRN3	chr14	31495110	-	RNASE10	chr14	20978626	+
5CDS-5UTR	ENST00000355683	ENST00000328444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	STRN3	chr14	31495110	-	RNASE10	chr14	20978626	+
In-frame	ENST00000357479	ENST00000430083		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	STRN3	chr14	31495110	-	RNASE10	chr14	20978626	+
5CDS-5UTR	ENST00000357479	ENST00000328444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	STRN3	chr14	31495110	-	RNASE10	chr14	20978626	+
intron-3CDS	ENST00000366206	ENST00000430083		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	STRN3	chr14	31495110	-	RNASE10	chr14	20978626	+
intron-5UTR	ENST00000366206	ENST00000328444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	STRN3	chr14	31495110	-	RNASE10	chr14	20978626	+
5UTR-3CDS	ENST00000453658	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000453658	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000453658	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-5UTR	ENST00000453658	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000377259	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000377259	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000377259	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-5UTR	ENST00000377259	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000377245	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000377245	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000377245	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000377245	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000348208	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000348208	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000348208	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000348208	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000265384	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000265384	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000265384	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000265384	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000535702	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000535702	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000535702	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000535702	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000539225	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000539225	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000539225	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000539225	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000498204	ENST00000396364		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000498204	ENST00000377270		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000498204	ENST00000396366		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000498204	ENST00000498653		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
3UTR-3CDS	ENST00000395996	ENST00000520552		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
3UTR-intron	ENST00000395996	ENST00000335659		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
3UTR-intron	ENST00000395996	ENST00000519597		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
3UTR-intron	ENST00000395996	ENST00000520311		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
3UTR-intron	ENST00000395996	ENST00000519316		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
3UTR-intron	ENST00000395996	ENST00000524319		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
Frame-shit	ENST00000358544	ENST00000520552		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000358544	ENST00000335659		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000358544	ENST00000519597		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000358544	ENST00000520311		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000358544	ENST00000519316		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000358544	ENST00000524319		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
Frame-shit	ENST00000357162	ENST00000520552		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000357162	ENST00000335659		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000357162	ENST00000519597		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000357162	ENST00000520311		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000357162	ENST00000519316		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
5CDS-intron	ENST00000357162	ENST00000524319		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-3CDS	ENST00000355155	ENST00000520552		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000355155	ENST00000335659		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000355155	ENST00000519597		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000355155	ENST00000520311		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000355155	ENST00000519316		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000355155	ENST00000524319		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-3CDS	ENST00000441350	ENST00000520552		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000441350	ENST00000335659		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000441350	ENST00000519597		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000441350	ENST00000520311		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000441350	ENST00000519316		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000441350	ENST00000524319		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-3CDS	ENST00000521932	ENST00000520552		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000521932	ENST00000335659		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000521932	ENST00000519597		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000521932	ENST00000520311		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000521932	ENST00000519316		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
intron-intron	ENST00000521932	ENST00000524319		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	VPS13B	chr8	100791259	+	ANKRD46	chr8	101522867	-
3UTR-5UTR	ENST00000395996	ENST00000436771		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
3UTR-5UTR	ENST00000395996	ENST00000521246		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000358544	ENST00000436771		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000358544	ENST00000521246		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000357162	ENST00000436771		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000357162	ENST00000521246		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000355155	ENST00000436771		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000355155	ENST00000521246		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000441350	ENST00000436771		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000441350	ENST00000521246		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000521932	ENST00000436771		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000521932	ENST00000521246		TCGA	RV	BLCA	TCGA-UY-A78O-01A	VPS13B	chr8	100847966	+	C8orf56	chr8	104145597	-
Frame-shit	ENST00000261560	ENST00000538922		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000261560	ENST00000324662		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000261560	ENST00000567541		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000599548	ENST00000538922		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000599548	ENST00000324662		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000599548	ENST00000567541		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000595401	ENST00000538922		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000595401	ENST00000324662		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
Frame-shit	ENST00000595401	ENST00000567541		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	ZNF430	chr19	21205687	+	CD19	chr16	28944232	+
In-frame	ENST00000352732	ENST00000421745		TCGA	RV	BLCA	TCGA-GV-A3QI-01A	ABHD2	chr15	89745591	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000565973	ENST00000421745		TCGA	RV	BLCA	TCGA-GV-A3QI-01A	ABHD2	chr15	89745591	+	BIRC6	chr2	32820101	+
In-frame	ENST00000355100	ENST00000421745		TCGA	RV	BLCA	TCGA-GV-A3QI-01A	ABHD2	chr15	89745591	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000562254	ENST00000421745		TCGA	RV	BLCA	TCGA-GV-A3QI-01A	ABHD2	chr15	89745591	+	BIRC6	chr2	32820101	+
In-frame	ENST00000487273	ENST00000255087		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
5CDS-intron	ENST00000487273	ENST00000540869		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
5CDS-intron	ENST00000487273	ENST00000443940		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
5CDS-intron	ENST00000487273	ENST00000544963		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-3CDS	ENST00000466936	ENST00000255087		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000466936	ENST00000540869		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000466936	ENST00000443940		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000466936	ENST00000544963		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-3CDS	ENST00000481513	ENST00000255087		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000481513	ENST00000540869		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000481513	ENST00000443940		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000481513	ENST00000544963		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-3CDS	ENST00000484143	ENST00000255087		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000484143	ENST00000540869		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000484143	ENST00000443940		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
intron-intron	ENST00000484143	ENST00000544963		TCGA	RV	BLCA	TCGA-LT-A8JT-01A	ADAM9	chr8	38928922	+	MTL5	chr11	68483407	-
Frame-shit	ENST00000294016	ENST00000204517		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	ADCY9	chr16	4163751	-	TFAP4	chr16	4312702	-
intron-3CDS	ENST00000571889	ENST00000204517		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	ADCY9	chr16	4163751	-	TFAP4	chr16	4312702	-
5UTR-3CDS	ENST00000260526	ENST00000262843		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ARHGAP29	chr1	94702971	-	MID2	chrX	107147188	+
5UTR-3CDS	ENST00000260526	ENST00000443968		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ARHGAP29	chr1	94702971	-	MID2	chrX	107147188	+
intron-3CDS	ENST00000482481	ENST00000262843		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ARHGAP29	chr1	94702971	-	MID2	chrX	107147188	+
intron-3CDS	ENST00000482481	ENST00000443968		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ARHGAP29	chr1	94702971	-	MID2	chrX	107147188	+
5UTR-3CDS	ENST00000370217	ENST00000262843		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ARHGAP29	chr1	94702971	-	MID2	chrX	107147188	+
5UTR-3CDS	ENST00000370217	ENST00000443968		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ARHGAP29	chr1	94702971	-	MID2	chrX	107147188	+
5UTR-3CDS	ENST00000368346	ENST00000437809		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000368346	ENST00000368331		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000368346	ENST00000271883		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-intron	ENST00000368346	ENST00000361040		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-intron	ENST00000368346	ENST00000471341		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000392403	ENST00000437809		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000392403	ENST00000368331		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000392403	ENST00000271883		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-intron	ENST00000392403	ENST00000361040		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-intron	ENST00000392403	ENST00000471341		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000548830	ENST00000437809		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000548830	ENST00000368331		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-3CDS	ENST00000548830	ENST00000271883		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-intron	ENST00000548830	ENST00000361040		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
5UTR-intron	ENST00000548830	ENST00000471341		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155730432	-
In-frame	ENST00000389153	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000389153	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000389153	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000608853	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000608853	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000608853	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000377617	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000377617	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000377617	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
Frame-shit	ENST00000550104	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
Frame-shit	ENST00000550104	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
Frame-shit	ENST00000550104	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
Frame-shit	ENST00000542287	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
Frame-shit	ENST00000542287	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
Frame-shit	ENST00000542287	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000535949	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000535949	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000535949	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
intron-3CDS	ENST00000549455	ENST00000419234		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
intron-3CDS	ENST00000549455	ENST00000539060		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
intron-3CDS	ENST00000549455	ENST00000327551		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	ATXN2	chr12	111947353	-	BRAP	chr12	112087846	-
In-frame	ENST00000379441	ENST00000338193		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000379441	ENST00000552408		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
Frame-shit	ENST00000179765	ENST00000338193		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000179765	ENST00000552408		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
In-frame	ENST00000551812	ENST00000338193		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000551812	ENST00000552408		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
Frame-shit	ENST00000549884	ENST00000338193		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000549884	ENST00000552408		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
intron-3CDS	ENST00000553222	ENST00000338193		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
intron-intron	ENST00000553222	ENST00000552408		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	BAZ2A	chr12	57003520	-	PRIM1	chr12	57128029	-
In-frame	ENST00000276704	ENST00000287394		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	C8orf76	chr8	124238740	-	ATAD2	chr8	124335306	-
In-frame	ENST00000276704	ENST00000521903		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	C8orf76	chr8	124238740	-	ATAD2	chr8	124335306	-
5CDS-intron	ENST00000276704	ENST00000534257		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	C8orf76	chr8	124238740	-	ATAD2	chr8	124335306	-
In-frame	ENST00000521310	ENST00000287394		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	C8orf76	chr8	124238740	-	ATAD2	chr8	124335306	-
In-frame	ENST00000521310	ENST00000521903		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	C8orf76	chr8	124238740	-	ATAD2	chr8	124335306	-
5CDS-intron	ENST00000521310	ENST00000534257		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	C8orf76	chr8	124238740	-	ATAD2	chr8	124335306	-
intron-3CDS	ENST00000511642	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000511642	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000511642	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000511642	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000511642	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000415497	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000415497	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000415497	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000415497	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000415497	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000372988	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000372988	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000372988	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000372988	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000372988	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000510503	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000510503	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000510503	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000510503	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000510503	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000511686	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000511686	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000511686	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000511686	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
5UTR-3CDS	ENST00000511686	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372991	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372991	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372991	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372991	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372991	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372987	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372987	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372987	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372987	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000372987	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000414200	ENST00000541110		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000414200	ENST00000372917		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000414200	ENST00000372922		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000414200	ENST00000340840		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000414200	ENST00000354325		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42222664	-
intron-3CDS	ENST00000361570	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000361570	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000361570	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000361570	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000361570	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000361570	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000361570	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000361570	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
In-frame	ENST00000304494	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000304494	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000304494	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000304494	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000304494	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000304494	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000304494	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000304494	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000579755	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000579755	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000579755	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000579755	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000579755	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000579755	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000579755	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000579755	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
In-frame	ENST00000579122	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000579122	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000579122	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000579122	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000579122	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000579122	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000579122	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000579122	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000578845	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000578845	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000578845	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000578845	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000578845	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000578845	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000578845	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000578845	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000530628	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000530628	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000530628	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000530628	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000530628	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000530628	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000530628	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000530628	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
In-frame	ENST00000498124	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000498124	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000498124	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000498124	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000498124	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000498124	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000498124	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000498124	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000498628	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000498628	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000498628	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000498628	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000498628	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000498628	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000498628	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000498628	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000494262	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000494262	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000494262	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000494262	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000494262	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000494262	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000494262	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000494262	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
In-frame	ENST00000446177	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000446177	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000446177	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000446177	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000446177	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000446177	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000446177	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000446177	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000479692	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000479692	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000479692	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000479692	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000479692	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000479692	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000479692	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000479692	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000497750	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000497750	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000497750	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000497750	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000497750	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000497750	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000497750	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000497750	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000470819	ENST00000409018		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000470819	ENST00000492815		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000470819	ENST00000409014		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000470819	ENST00000409675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000470819	ENST00000409949		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000470819	ENST00000409242		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000470819	ENST00000312994		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000470819	ENST00000449989		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	CDKN2A	chr9	21974677	-	EXD2	chr14	69695533	+
In-frame	ENST00000518476	ENST00000327283		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
Frame-shit	ENST00000518476	ENST00000591115		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
In-frame	ENST00000518476	ENST00000353319		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
5CDS-intron	ENST00000518476	ENST00000309660		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
5CDS-intron	ENST00000518476	ENST00000589086		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
5CDS-intron	ENST00000518476	ENST00000591497		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
intron-3CDS	ENST00000522427	ENST00000327283		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
intron-3CDS	ENST00000522427	ENST00000591115		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
intron-3CDS	ENST00000522427	ENST00000353319		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
intron-intron	ENST00000522427	ENST00000309660		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
intron-intron	ENST00000522427	ENST00000589086		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
intron-intron	ENST00000522427	ENST00000591497		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	CNBD1	chr8	88366014	+	PTPN2	chr18	12785843	-
In-frame	ENST00000317147	ENST00000245206		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
In-frame	ENST00000317147	ENST00000434819		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
5CDS-5UTR	ENST00000317147	ENST00000564400		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
In-frame	ENST00000569240	ENST00000245206		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
In-frame	ENST00000569240	ENST00000434819		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
5CDS-5UTR	ENST00000569240	ENST00000564400		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
In-frame	ENST00000441024	ENST00000245206		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
In-frame	ENST00000441024	ENST00000434819		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
5CDS-5UTR	ENST00000441024	ENST00000564400		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000569732	ENST00000245206		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000569732	ENST00000434819		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
intron-5UTR	ENST00000569732	ENST00000564400		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000245138	ENST00000245206		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000245138	ENST00000434819		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
intron-5UTR	ENST00000245138	ENST00000564400		TCGA	RV	BLCA	TCGA-E7-A85H-01A	CNOT1	chr16	58608513	-	GOT2	chr16	58757806	-
5CDS-5UTR	ENST00000347053	ENST00000318789		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000347053	ENST00000475937		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000347053	ENST00000493089		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000347053	ENST00000484350		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000347053	ENST00000318779		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000347053	ENST00000491238		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000347053	ENST00000498215		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000347053	ENST00000468577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000347053	ENST00000472382		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000297135	ENST00000318789		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000297135	ENST00000475937		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000297135	ENST00000493089		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000297135	ENST00000484350		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000297135	ENST00000318779		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000297135	ENST00000491238		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000297135	ENST00000498215		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000297135	ENST00000468577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000297135	ENST00000472382		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000393603	ENST00000318789		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000393603	ENST00000475937		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000393603	ENST00000493089		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000393603	ENST00000484350		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000393603	ENST00000318779		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000393603	ENST00000491238		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000393603	ENST00000498215		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000393603	ENST00000468577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000393603	ENST00000472382		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000475638	ENST00000318789		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000475638	ENST00000475937		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000475638	ENST00000493089		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000475638	ENST00000484350		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000475638	ENST00000318779		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000475638	ENST00000491238		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000475638	ENST00000498215		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000475638	ENST00000468577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000475638	ENST00000472382		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	COG5	chr7	107188556	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000360467	ENST00000228741		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	COL4A2	chr13	111165374	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000360467	ENST00000552142		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	COL4A2	chr13	111165374	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000360467	ENST00000549529		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	COL4A2	chr13	111165374	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000462309	ENST00000228741		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	COL4A2	chr13	111165374	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000462309	ENST00000552142		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	COL4A2	chr13	111165374	+	ELK3	chr12	96588323	+
intron-intron	ENST00000462309	ENST00000549529		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	COL4A2	chr13	111165374	+	ELK3	chr12	96588323	+
In-frame	ENST00000340748	ENST00000250572		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000340748	ENST00000381407		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000340748	ENST00000312053		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000340748	ENST00000450315		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000340748	ENST00000381404		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
5CDS-intron	ENST00000340748	ENST00000601198		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000540357	ENST00000250572		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000540357	ENST00000381407		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000540357	ENST00000312053		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000540357	ENST00000450315		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000540357	ENST00000381404		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
5CDS-intron	ENST00000540357	ENST00000601198		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000359526	ENST00000250572		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000359526	ENST00000381407		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000359526	ENST00000312053		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000359526	ENST00000450315		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
In-frame	ENST00000359526	ENST00000381404		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
5CDS-intron	ENST00000359526	ENST00000601198		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
intron-3CDS	ENST00000589538	ENST00000250572		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
intron-3CDS	ENST00000589538	ENST00000381407		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
intron-3CDS	ENST00000589538	ENST00000312053		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
intron-3CDS	ENST00000589538	ENST00000450315		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
intron-3CDS	ENST00000589538	ENST00000381404		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
intron-intron	ENST00000589538	ENST00000601198		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	DNMT1	chr19	10266529	-	EMR1	chr19	6890492	+
5CDS-intron	ENST00000398514	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000398514	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000398514	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000343218	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000343218	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000343218	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000534907	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000534907	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000534907	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000504965	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000504965	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000504965	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	DPYSL3	chr5	146770375	-	ANKS1A	chr6	34977682	+
5UTR-3CDS	ENST00000330386	ENST00000551456		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000330386	ENST00000398458		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000389561	ENST00000551456		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000389561	ENST00000398458		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000333577	ENST00000551456		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000333577	ENST00000398458		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000332482	ENST00000551456		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000332482	ENST00000398458		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000389562	ENST00000551456		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-3CDS	ENST00000389562	ENST00000398458		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	EP400	chr12	132434581	+	TMPRSS12	chr12	51237625	+
5UTR-intron	ENST00000474874	ENST00000418342		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000474874	ENST00000302291		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000474874	ENST00000314174		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000474874	ENST00000374623		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000377482	ENST00000418342		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000377482	ENST00000302291		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000377482	ENST00000314174		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000377482	ENST00000374623		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
intron-intron	ENST00000467067	ENST00000418342		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
intron-intron	ENST00000467067	ENST00000302291		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
intron-intron	ENST00000467067	ENST00000314174		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
intron-intron	ENST00000467067	ENST00000374623		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000469499	ENST00000418342		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000469499	ENST00000302291		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000469499	ENST00000314174		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
5UTR-intron	ENST00000469499	ENST00000374623		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23436143	-
Frame-shit	ENST00000378204	ENST00000375915		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	EXT1	chr8	119122324	-	FAM155A	chr13	107823134	-
intron-3CDS	ENST00000474534	ENST00000372577		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
intron-intron	ENST00000474534	ENST00000550219		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
In-frame	ENST00000358369	ENST00000372577		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
5CDS-intron	ENST00000358369	ENST00000550219		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
3UTR-3CDS	ENST00000277475	ENST00000372577		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
3UTR-intron	ENST00000277475	ENST00000550219		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
3UTR-3CDS	ENST00000406926	ENST00000372577		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
3UTR-intron	ENST00000406926	ENST00000550219		TCGA	RV	BLCA	TCGA-UY-A78K-01A	FAM73B	chr9	131831408	+	NUP188	chr9	131755476	+
In-frame	ENST00000300027	ENST00000352732		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
In-frame	ENST00000300027	ENST00000565973		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
In-frame	ENST00000300027	ENST00000355100		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
5CDS-intron	ENST00000300027	ENST00000562254		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
In-frame	ENST00000310775	ENST00000352732		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
In-frame	ENST00000310775	ENST00000565973		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
In-frame	ENST00000310775	ENST00000355100		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
5CDS-intron	ENST00000310775	ENST00000562254		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000451393	ENST00000352732		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000451393	ENST00000565973		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000451393	ENST00000355100		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-intron	ENST00000451393	ENST00000562254		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000567996	ENST00000352732		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000567996	ENST00000565973		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000567996	ENST00000355100		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-intron	ENST00000567996	ENST00000562254		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000566615	ENST00000352732		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000566615	ENST00000565973		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000566615	ENST00000355100		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
intron-intron	ENST00000566615	ENST00000562254		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	FANCI	chr15	89822005	+	ABHD2	chr15	89719043	+
Frame-shit	ENST00000588025	ENST00000281038		TCGA	RV	BLCA	TCGA-GU-A764-01A	FARSA	chr19	13034965	-	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000588025	ENST00000528850		TCGA	RV	BLCA	TCGA-GU-A764-01A	FARSA	chr19	13034965	-	NARS2	chr11	78239982	-
Frame-shit	ENST00000423140	ENST00000281038		TCGA	RV	BLCA	TCGA-GU-A764-01A	FARSA	chr19	13034965	-	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000423140	ENST00000528850		TCGA	RV	BLCA	TCGA-GU-A764-01A	FARSA	chr19	13034965	-	NARS2	chr11	78239982	-
Frame-shit	ENST00000314606	ENST00000281038		TCGA	RV	BLCA	TCGA-GU-A764-01A	FARSA	chr19	13034965	-	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000314606	ENST00000528850		TCGA	RV	BLCA	TCGA-GU-A764-01A	FARSA	chr19	13034965	-	NARS2	chr11	78239982	-
intron-3CDS	ENST00000484457	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000484457	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000484457	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000484457	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000484457	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-5UTR	ENST00000484457	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000484457	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000484457	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000484457	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000538892	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000538892	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000538892	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000538892	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000538892	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-5UTR	ENST00000538892	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000538892	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000538892	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000538892	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000283627	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000283627	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000283627	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000283627	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000283627	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-5UTR	ENST00000283627	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000283627	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000283627	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000283627	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
Frame-shit	ENST00000538181	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
Frame-shit	ENST00000538181	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
Frame-shit	ENST00000538181	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
Frame-shit	ENST00000538181	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
Frame-shit	ENST00000538181	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5CDS-5UTR	ENST00000538181	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5CDS-intron	ENST00000538181	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5CDS-intron	ENST00000538181	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5CDS-intron	ENST00000538181	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000446237	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000446237	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000446237	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000446237	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000446237	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-5UTR	ENST00000446237	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-intron	ENST00000446237	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-intron	ENST00000446237	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-intron	ENST00000446237	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000507198	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000507198	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000507198	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000507198	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-3CDS	ENST00000507198	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-5UTR	ENST00000507198	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000507198	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000507198	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
intron-intron	ENST00000507198	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000542085	ENST00000335044		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000542085	ENST00000265529		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000542085	ENST00000444589		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000542085	ENST00000452770		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-3CDS	ENST00000542085	ENST00000352910		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-5UTR	ENST00000542085	ENST00000487440		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-intron	ENST00000542085	ENST00000425853		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-intron	ENST00000542085	ENST00000432493		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
5UTR-intron	ENST00000542085	ENST00000425452		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	FBXL2	chr3	33339454	+	KIF9	chr3	47299050	-
Frame-shit	ENST00000309156	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000309156	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000309156	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000309156	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000309156	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000309185	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000309185	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000309185	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000309185	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000309185	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000394211	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000394211	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394211	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394211	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000394211	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
intron-3CDS	ENST00000578702	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
intron-5UTR	ENST00000578702	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
intron-3UTR	ENST00000578702	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
intron-3UTR	ENST00000578702	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
intron-intron	ENST00000578702	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000445327	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000445327	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000445327	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000445327	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000445327	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000394209	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000394209	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394209	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394209	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000394209	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000394204	ENST00000315392		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000394204	ENST00000493200		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394204	ENST00000539608		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394204	ENST00000444911		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000394204	ENST00000394316		TCGA	RV	BLCA	TCGA-CU-A0YR-01A	GRB7	chr17	37900460	+	PLXDC1	chr17	37224212	-
5UTR-3CDS	ENST00000443617	ENST00000261891		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64231560	-
5UTR-3CDS	ENST00000443617	ENST00000457488		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64231560	-
5UTR-3CDS	ENST00000443617	ENST00000558069		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64231560	-
5UTR-5UTR	ENST00000443617	ENST00000558482		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64231560	-
Frame-shit	ENST00000406875	ENST00000416379		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
Frame-shit	ENST00000406875	ENST00000339375		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-5UTR	ENST00000406875	ENST00000450876		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000406875	ENST00000474857		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000406875	ENST00000345589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000406875	ENST00000546258		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
Frame-shit	ENST00000428878	ENST00000416379		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
Frame-shit	ENST00000428878	ENST00000339375		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-5UTR	ENST00000428878	ENST00000450876		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000428878	ENST00000474857		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000428878	ENST00000345589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000428878	ENST00000546258		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
Frame-shit	ENST00000342645	ENST00000416379		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
Frame-shit	ENST00000342645	ENST00000339375		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-5UTR	ENST00000342645	ENST00000450876		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000342645	ENST00000474857		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000342645	ENST00000345589		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-intron	ENST00000342645	ENST00000546258		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	HIPK2	chr7	139305147	-	TMEM130	chr7	98461023	-
5CDS-5UTR	ENST00000283249	ENST00000474820		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000348849		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000409075		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000409289		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000392753		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000409972		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000474820		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000348849		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000409075		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000409289		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000392753		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000409972		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000474820		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000348849		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000409075		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000409289		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000392753		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000409972		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000474820		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000348849		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000409075		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000409289		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000392753		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000409972		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000474820		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000348849		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000409075		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000409289		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000392753		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000409972		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
Frame-shit	ENST00000342056	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000342056	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000342056	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000355194	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000355194	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000355194	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000370398	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000370398	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000370398	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000370392	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000370392	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000370392	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000355635	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000355635	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000355635	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000414165	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000414165	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000414165	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000402622	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000402622	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000402622	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000403813	ENST00000298248		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000403813	ENST00000382812		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
5CDS-5UTR	ENST00000403813	ENST00000480748		TCGA	RV	BLCA	TCGA-DK-AA6T-01A	KCNQ5	chr6	73751785	+	CRYL1	chr13	21006435	-
Frame-shit	ENST00000396368	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
5CDS-intron	ENST00000396368	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
Frame-shit	ENST00000540441	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
5CDS-intron	ENST00000540441	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
In-frame	ENST00000344181	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
5CDS-intron	ENST00000344181	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
Frame-shit	ENST00000551742	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
5CDS-intron	ENST00000551742	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
Frame-shit	ENST00000602337	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
5CDS-intron	ENST00000602337	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
Frame-shit	ENST00000548025	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
5CDS-intron	ENST00000548025	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
intron-3CDS	ENST00000547936	ENST00000263026		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
intron-intron	ENST00000547936	ENST00000561791		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	KIAA0430	chr16	15694285	-	EEF2K	chr16	22291519	+
Frame-shit	ENST00000418530	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
Frame-shit	ENST00000418530	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
Frame-shit	ENST00000418530	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000418530	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000418530	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000418530	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000418530	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000256707	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000256707	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000256707	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000256707	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000256707	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000256707	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000256707	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000427284	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000427284	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000427284	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000427284	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000427284	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000427284	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000427284	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
Frame-shit	ENST00000473731	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
Frame-shit	ENST00000473731	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
Frame-shit	ENST00000473731	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000473731	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000473731	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000473731	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000473731	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000319688	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000319688	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
In-frame	ENST00000319688	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000319688	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000319688	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000319688	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-intron	ENST00000319688	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000436566	ENST00000503581		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000436566	ENST00000370621		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000436566	ENST00000370616		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-intron	ENST00000436566	ENST00000393380		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-intron	ENST00000436566	ENST00000342421		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-intron	ENST00000436566	ENST00000370618		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
intron-intron	ENST00000436566	ENST00000486069		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	KIDINS220	chr2	8910800	-	EYS	chr6	64709076	-
5CDS-5UTR	ENST00000391946	ENST00000546079		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000391946	ENST00000541297		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000391946	ENST00000337392		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-intron	ENST00000391946	ENST00000589158		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000585434	ENST00000546079		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000585434	ENST00000541297		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000585434	ENST00000337392		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-intron	ENST00000585434	ENST00000589158		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000470402	ENST00000546079		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000470402	ENST00000541297		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-5UTR	ENST00000470402	ENST00000337392		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-intron	ENST00000470402	ENST00000589158		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	KLC3	chr19	45854005	+	CLPTM1	chr19	45476344	+
5CDS-intron	ENST00000526589	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000526589	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000526589	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526589	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000526589	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526589	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526589	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000527974	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000527974	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000527974	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000527974	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000527974	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000527974	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000527974	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000352231	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000352231	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000352231	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000352231	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000352231	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000352231	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000352231	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000341872	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000341872	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000341872	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000341872	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000341872	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000341872	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000341872	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000450372	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000450372	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000450372	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000450372	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000450372	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000450372	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000450372	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000366584	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000366584	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000366584	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000366584	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000366584	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000366584	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000366584	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000416919	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000416919	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000416919	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000416919	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000416919	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000416919	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000416919	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000323938	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000323938	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000323938	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000323938	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000323938	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000323938	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000323938	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526634	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000526634	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000526634	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526634	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000526634	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526634	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000526634	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000525042	ENST00000537040		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000525042	ENST00000451864		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000525042	ENST00000400992		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000525042	ENST00000368246		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-5UTR	ENST00000525042	ENST00000255013		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000525042	ENST00000368249		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
5CDS-intron	ENST00000525042	ENST00000494874		TCGA	RV	BLCA	TCGA-FD-A3B4-01A	LGALS8	chr1	236689415	+	RHBG	chr1	156344398	+
intron-3CDS	ENST00000552491	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552491	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552491	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552491	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552491	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000547825	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000547825	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000547825	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000547825	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000547825	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552823	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552823	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552823	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552823	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552823	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
Frame-shit	ENST00000394943	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
Frame-shit	ENST00000394943	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-intron	ENST00000394943	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-intron	ENST00000394943	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-intron	ENST00000394943	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
Frame-shit	ENST00000341247	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
Frame-shit	ENST00000341247	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-intron	ENST00000341247	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-intron	ENST00000341247	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-intron	ENST00000341247	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552783	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552783	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552783	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552783	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552783	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552909	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552909	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552909	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552909	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552909	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552008	ENST00000419821		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-3CDS	ENST00000552008	ENST00000392533		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552008	ENST00000537952		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552008	ENST00000543709		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
intron-intron	ENST00000552008	ENST00000536979		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	LIMA1	chr12	50642416	-	TAOK3	chr12	118682770	-
5CDS-3UTR	ENST00000298717	ENST00000327430		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
5CDS-3UTR	ENST00000298717	ENST00000317492		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
5CDS-3UTR	ENST00000298717	ENST00000538754		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
5CDS-3UTR	ENST00000298717	ENST00000450879		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
3UTR-3UTR	ENST00000538267	ENST00000327430		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
3UTR-3UTR	ENST00000538267	ENST00000317492		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
3UTR-3UTR	ENST00000538267	ENST00000538754		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
3UTR-3UTR	ENST00000538267	ENST00000450879		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
intron-3UTR	ENST00000545319	ENST00000327430		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
intron-3UTR	ENST00000545319	ENST00000317492		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
intron-3UTR	ENST00000545319	ENST00000538754		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
intron-3UTR	ENST00000545319	ENST00000450879		TCGA	RV	BLCA	TCGA-G2-A3IE-01A	METTL3	chr14	21971316	-	SALL2	chr14	21990378	-
Frame-shit	ENST00000265433	ENST00000220751		TCGA	RV	BLCA	TCGA-E7-A85H-01A	NBN	chr8	90976638	-	RIPK2	chr8	90796278	+
Frame-shit	ENST00000265433	ENST00000540020		TCGA	RV	BLCA	TCGA-E7-A85H-01A	NBN	chr8	90976638	-	RIPK2	chr8	90796278	+
Frame-shit	ENST00000409330	ENST00000220751		TCGA	RV	BLCA	TCGA-E7-A85H-01A	NBN	chr8	90976638	-	RIPK2	chr8	90796278	+
Frame-shit	ENST00000409330	ENST00000540020		TCGA	RV	BLCA	TCGA-E7-A85H-01A	NBN	chr8	90976638	-	RIPK2	chr8	90796278	+
5UTR-3CDS	ENST00000282516	ENST00000507110		TCGA	RV	BLCA	TCGA-ZF-AA4V-01A	NIPBL	chr5	36877280	+	MRPS30	chr5	44811111	+
5UTR-intron	ENST00000282516	ENST00000230914		TCGA	RV	BLCA	TCGA-ZF-AA4V-01A	NIPBL	chr5	36877280	+	MRPS30	chr5	44811111	+
5UTR-3CDS	ENST00000448238	ENST00000507110		TCGA	RV	BLCA	TCGA-ZF-AA4V-01A	NIPBL	chr5	36877280	+	MRPS30	chr5	44811111	+
5UTR-intron	ENST00000448238	ENST00000230914		TCGA	RV	BLCA	TCGA-ZF-AA4V-01A	NIPBL	chr5	36877280	+	MRPS30	chr5	44811111	+
intron-3CDS	ENST00000504430	ENST00000507110		TCGA	RV	BLCA	TCGA-ZF-AA4V-01A	NIPBL	chr5	36877280	+	MRPS30	chr5	44811111	+
intron-intron	ENST00000504430	ENST00000230914		TCGA	RV	BLCA	TCGA-ZF-AA4V-01A	NIPBL	chr5	36877280	+	MRPS30	chr5	44811111	+
In-frame	ENST00000554546	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554546	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554546	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554546	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554546	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554546	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554546	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
Frame-shit	ENST00000356296	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000356296	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000356296	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000356296	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000356296	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000356296	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000356296	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000557597	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000557597	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000557597	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000557597	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000557597	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000557597	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000557597	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000555238	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555238	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555238	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555238	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555238	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555238	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555238	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
Frame-shit	ENST00000355058	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000355058	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000355058	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000355058	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000355058	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000355058	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000355058	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
Frame-shit	ENST00000359560	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000359560	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000359560	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000359560	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000359560	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000359560	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000359560	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000555394	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555394	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555394	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555394	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555394	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555394	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555394	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000454166	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000454166	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000454166	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000454166	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000454166	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000454166	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000454166	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000544991	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000544991	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000544991	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000544991	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000544991	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000544991	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000544991	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000560335	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000560335	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000560335	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000560335	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000560335	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000560335	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000560335	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000555738	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555738	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555738	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555738	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555738	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555738	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000555738	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000559312	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000559312	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000559312	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000559312	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000559312	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000559312	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000559312	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000554521	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554521	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554521	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554521	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554521	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554521	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000554521	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
Frame-shit	ENST00000535282	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000535282	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000535282	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000535282	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000535282	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000535282	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000535282	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-3CDS	ENST00000556600	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000556600	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000556600	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000556600	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000556600	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000556600	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000556600	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
Frame-shit	ENST00000556772	ENST00000557636		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000556772	ENST00000286650		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000556772	ENST00000298832		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000556772	ENST00000556893		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000556772	ENST00000554510		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000556772	ENST00000556977		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000556772	ENST00000555422		TCGA	RV	BLCA	TCGA-YF-AA3L-01A	NUMB	chr14	73759442	-	TTLL5	chr14	76286350	+
In-frame	ENST00000245544	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
5CDS-intron	ENST00000245544	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
In-frame	ENST00000541827	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
5CDS-intron	ENST00000541827	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
In-frame	ENST00000579324	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
5CDS-intron	ENST00000579324	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
intron-3CDS	ENST00000449421	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
intron-intron	ENST00000449421	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
In-frame	ENST00000579298	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
5CDS-intron	ENST00000579298	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
In-frame	ENST00000447371	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
5CDS-intron	ENST00000447371	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
In-frame	ENST00000540768	ENST00000374142		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
5CDS-intron	ENST00000540768	ENST00000478902		TCGA	RV	BLCA	TCGA-CF-A1HR-01A	NUP85	chr17	73229253	+	ZDHHC18	chr1	27180217	+
Frame-shit	ENST00000355520	ENST00000373031		TCGA	RV	BLCA	TCGA-GU-A767-01A	OPHN1	chrX	67494580	-	TNMD	chrX	99848892	+
5CDS-3UTR	ENST00000355520	ENST00000485971		TCGA	RV	BLCA	TCGA-GU-A767-01A	OPHN1	chrX	67494580	-	TNMD	chrX	99848892	+
Frame-shit	ENST00000540071	ENST00000373031		TCGA	RV	BLCA	TCGA-GU-A767-01A	OPHN1	chrX	67494580	-	TNMD	chrX	99848892	+
5CDS-3UTR	ENST00000540071	ENST00000485971		TCGA	RV	BLCA	TCGA-GU-A767-01A	OPHN1	chrX	67494580	-	TNMD	chrX	99848892	+
intron-3CDS	ENST00000484842	ENST00000373031		TCGA	RV	BLCA	TCGA-GU-A767-01A	OPHN1	chrX	67494580	-	TNMD	chrX	99848892	+
intron-3UTR	ENST00000484842	ENST00000485971		TCGA	RV	BLCA	TCGA-GU-A767-01A	OPHN1	chrX	67494580	-	TNMD	chrX	99848892	+
5UTR-3CDS	ENST00000540342	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000540342	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000542092	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000542092	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000349767	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000349767	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000393592	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
5UTR-3CDS	ENST00000393592	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000393591	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000393591	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000540124	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000540124	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000393590	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000393590	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000538328	ENST00000081029		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000538328	ENST00000538315		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	P2RY6	chr11	72975694	+	MRPS35	chr12	27890472	+
intron-3CDS	ENST00000393923	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393923	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393923	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393923	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393923	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000393923	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000412622	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000412622	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000412622	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000412622	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000412622	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-intron	ENST00000412622	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000431670	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000431670	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000431670	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000431670	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-3CDS	ENST00000431670	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5UTR-intron	ENST00000431670	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393925	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393925	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393925	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393925	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000393925	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000393925	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000481953	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000481953	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000481953	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000481953	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000481953	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000481953	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000495180	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000495180	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000495180	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000495180	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000495180	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000495180	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000478922	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000478922	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000478922	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000478922	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000478922	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000478922	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000477695	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000477695	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000477695	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000477695	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000477695	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000477695	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000470699	ENST00000490337		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000470699	ENST00000389636		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000470699	ENST00000471742		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000470699	ENST00000302490		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000470699	ENST00000389634		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
intron-intron	ENST00000470699	ENST00000497291		TCGA	RV	BLCA	TCGA-DK-A3WY-01A	PHLDB2	chr3	111578423	+	KCNAB1	chr3	156139405	+
5CDS-intron	ENST00000247226	ENST00000545908		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
5CDS-intron	ENST00000247226	ENST00000216605		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
5CDS-3UTR	ENST00000247226	ENST00000556284		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
5CDS-intron	ENST00000394691	ENST00000545908		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
5CDS-intron	ENST00000394691	ENST00000216605		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
5CDS-3UTR	ENST00000394691	ENST00000556284		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-intron	ENST00000471182	ENST00000545908		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-intron	ENST00000471182	ENST00000216605		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-3UTR	ENST00000471182	ENST00000556284		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-intron	ENST00000484731	ENST00000545908		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-intron	ENST00000484731	ENST00000216605		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-3UTR	ENST00000484731	ENST00000556284		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-intron	ENST00000492928	ENST00000545908		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-intron	ENST00000492928	ENST00000216605		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
intron-3UTR	ENST00000492928	ENST00000556284		TCGA	RV	BLCA	TCGA-LT-A5Z6-01A	PLEKHG3	chr14	65199619	+	MTHFD1	chr14	64924932	+
5CDS-intron	ENST00000253925	ENST00000449833		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000253925	ENST00000409161		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000253925	ENST00000423696		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000253925	ENST00000338508		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000253925	ENST00000409530		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000253925	ENST00000449116		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000253925	ENST00000357171		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000253925	ENST00000468619		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000449833		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000409161		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000423696		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000338508		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000409530		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000449116		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000389547	ENST00000357171		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000389547	ENST00000468619		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000449833		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000409161		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000423696		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000338508		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000409530		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000449116		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-intron	ENST00000530548	ENST00000357171		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
intron-5UTR	ENST00000530548	ENST00000468619		TCGA	RV	BLCA	TCGA-4Z-AA7O-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70544868	-
5UTR-3CDS	ENST00000321521	ENST00000601953		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
5UTR-3CDS	ENST00000321521	ENST00000328867		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
5UTR-3CDS	ENST00000358359	ENST00000601953		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
5UTR-3CDS	ENST00000358359	ENST00000328867		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
3UTR-3CDS	ENST00000513500	ENST00000601953		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
3UTR-3CDS	ENST00000513500	ENST00000328867		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
intron-3CDS	ENST00000414217	ENST00000601953		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
intron-3CDS	ENST00000414217	ENST00000328867		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	PPIP5K2	chr5	102456192	+	CAPN12	chr19	39221863	-
Frame-shit	ENST00000263708	ENST00000264162		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	PTPN4	chr2	120567567	+	LCT	chr2	136590760	-
intron-3CDS	ENST00000544261	ENST00000264162		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	PTPN4	chr2	120567567	+	LCT	chr2	136590760	-
intron-3CDS	ENST00000460162	ENST00000264162		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	PTPN4	chr2	120567567	+	LCT	chr2	136590760	-
5CDS-5UTR	ENST00000399448	ENST00000433346		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-3UTR	ENST00000399448	ENST00000449039		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000399448	ENST00000007969		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000399448	ENST00000323702		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000399448	ENST00000443597		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000399448	ENST00000436789		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-intron	ENST00000399448	ENST00000429740		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000447931	ENST00000433346		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-3UTR	ENST00000447931	ENST00000449039		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000447931	ENST00000007969		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000447931	ENST00000323702		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000447931	ENST00000443597		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000447931	ENST00000436789		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-intron	ENST00000447931	ENST00000429740		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000318974	ENST00000433346		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-3UTR	ENST00000318974	ENST00000449039		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000318974	ENST00000007969		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000318974	ENST00000323702		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000318974	ENST00000443597		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000318974	ENST00000436789		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-intron	ENST00000318974	ENST00000429740		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000456013	ENST00000433346		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-3UTR	ENST00000456013	ENST00000449039		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000456013	ENST00000007969		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000456013	ENST00000323702		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000456013	ENST00000443597		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000456013	ENST00000436789		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-intron	ENST00000456013	ENST00000429740		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000539029	ENST00000433346		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-3UTR	ENST00000539029	ENST00000449039		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000539029	ENST00000007969		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000539029	ENST00000323702		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000539029	ENST00000443597		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000539029	ENST00000436789		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
intron-intron	ENST00000539029	ENST00000429740		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	PTPN6	chr12	7061340	+	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000426838	ENST00000427410		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000447388		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000425457		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000456393		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000372654		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000372653		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000372652		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000372651		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000440226		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000426838	ENST00000308733		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000426838	ENST00000483091		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000427410		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000447388		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000425457		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000456393		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000372654		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000372653		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000372652		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000372651		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000440226		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000282030	ENST00000308733		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000282030	ENST00000483091		TCGA	RV	BLCA	TCGA-FD-A43Y-01A	SETBP1	chr18	42449248	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000402198	ENST00000264926		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000402198	ENST00000495087		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000402466	ENST00000264926		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000402466	ENST00000495087		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000406341	ENST00000264926		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000406341	ENST00000495087		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000407969	ENST00000264926		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000407969	ENST00000495087		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000302463	ENST00000264926		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
5CDS-intron	ENST00000302463	ENST00000495087		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
3UTR-intron	ENST00000488236	ENST00000264926		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
3UTR-intron	ENST00000488236	ENST00000495087		TCGA	RV	BLCA	TCGA-GU-AATP-01A	SETD5	chr3	9490314	+	RAD18	chr3	9005277	-
In-frame	ENST00000380913	ENST00000380682		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHROOM2	chrX	9912953	+	FRMPD4	chrX	12724945	+
intron-3CDS	ENST00000493668	ENST00000380682		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHROOM2	chrX	9912953	+	FRMPD4	chrX	12724945	+
In-frame	ENST00000418909	ENST00000380682		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHROOM2	chrX	9912953	+	FRMPD4	chrX	12724945	+
In-frame	ENST00000264784	ENST00000423169		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
In-frame	ENST00000264784	ENST00000267868		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000264784	ENST00000557850		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000264784	ENST00000532743		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000264784	ENST00000382643		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000264784	ENST00000530766		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
Frame-shit	ENST00000506583	ENST00000423169		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
Frame-shit	ENST00000506583	ENST00000267868		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000506583	ENST00000557850		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000506583	ENST00000532743		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000506583	ENST00000382643		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000506583	ENST00000530766		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
Frame-shit	ENST00000309065	ENST00000423169		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
Frame-shit	ENST00000309065	ENST00000267868		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000309065	ENST00000557850		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000309065	ENST00000532743		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000309065	ENST00000382643		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
5CDS-intron	ENST00000309065	ENST00000530766		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
intron-3CDS	ENST00000481042	ENST00000423169		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
intron-3CDS	ENST00000481042	ENST00000267868		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
intron-intron	ENST00000481042	ENST00000557850		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
intron-intron	ENST00000481042	ENST00000532743		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
intron-intron	ENST00000481042	ENST00000382643		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
intron-intron	ENST00000481042	ENST00000530766		TCGA	RV	BLCA	TCGA-DK-A3X1-01A	SLC2A9	chr4	10020599	-	RAD51	chr15	40998375	+
Frame-shit	ENST00000262013	ENST00000367384		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000262013	ENST00000367378		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000262013	ENST00000464889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000262013	ENST00000367380		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5CDS-intron	ENST00000262013	ENST00000544496		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5CDS-intron	ENST00000262013	ENST00000480010		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000505279	ENST00000367384		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000505279	ENST00000367378		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000505279	ENST00000464889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000505279	ENST00000367380		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5CDS-intron	ENST00000505279	ENST00000544496		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5CDS-intron	ENST00000505279	ENST00000480010		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000357122	ENST00000367384		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000357122	ENST00000367378		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000357122	ENST00000464889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
Frame-shit	ENST00000357122	ENST00000367380		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5CDS-intron	ENST00000357122	ENST00000544496		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5CDS-intron	ENST00000357122	ENST00000480010		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000509724	ENST00000367384		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000509724	ENST00000367378		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000509724	ENST00000464889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000509724	ENST00000367380		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-intron	ENST00000509724	ENST00000544496		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-intron	ENST00000509724	ENST00000480010		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000510283	ENST00000367384		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000510283	ENST00000367378		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000510283	ENST00000464889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-3CDS	ENST00000510283	ENST00000367380		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-intron	ENST00000510283	ENST00000544496		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
intron-intron	ENST00000510283	ENST00000480010		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SPAG9	chr17	49124736	-	PCMT1	chr6	150092298	+
5UTR-3CDS	ENST00000357395	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
5UTR-5UTR	ENST00000357395	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
In-frame	ENST00000358025	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
5CDS-5UTR	ENST00000358025	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
In-frame	ENST00000344113	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
5CDS-5UTR	ENST00000344113	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000341472	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000341472	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000356081	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000356081	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
In-frame	ENST00000554584	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
5CDS-5UTR	ENST00000554584	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000555002	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000555002	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000394768	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000394768	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000556725	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000556725	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000553455	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000553455	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000555022	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000555022	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000554805	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000554805	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000458046	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000458046	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-3CDS	ENST00000441438	ENST00000359933		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
intron-5UTR	ENST00000441438	ENST00000261834		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	SYNE2	chr14	64498075	+	ATG2B	chr14	96761897	-
In-frame	ENST00000344293	ENST00000346798		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000354192		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000348990		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000357903		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000358918		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000359726		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000448388		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000440126		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
In-frame	ENST00000344293	ENST00000439274		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
5CDS-5UTR	ENST00000344293	ENST00000474136		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	TAF3	chr10	8019286	+	APP	chr21	27394358	-
5CDS-intron	ENST00000376840	ENST00000485752		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	TBC1D8	chr2	101638143	-	RNF149	chr2	101898519	-
5CDS-intron	ENST00000376840	ENST00000295317		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	TBC1D8	chr2	101638143	-	RNF149	chr2	101898519	-
5CDS-intron	ENST00000409318	ENST00000485752		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	TBC1D8	chr2	101638143	-	RNF149	chr2	101898519	-
5CDS-intron	ENST00000409318	ENST00000295317		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	TBC1D8	chr2	101638143	-	RNF149	chr2	101898519	-
intron-intron	ENST00000462819	ENST00000485752		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	TBC1D8	chr2	101638143	-	RNF149	chr2	101898519	-
intron-intron	ENST00000462819	ENST00000295317		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	TBC1D8	chr2	101638143	-	RNF149	chr2	101898519	-
5CDS-intron	ENST00000407690	ENST00000477874		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000407690	ENST00000319363		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000407431	ENST00000477874		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000407431	ENST00000319363		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000407148	ENST00000477874		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000407148	ENST00000319363		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000405938	ENST00000477874		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000405938	ENST00000319363		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
intron-intron	ENST00000496523	ENST00000477874		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
intron-intron	ENST00000496523	ENST00000319363		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TFIP11	chr22	26906030	-	IL17RA	chr22	17577952	+
Frame-shit	ENST00000340353	ENST00000285046		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000340353	ENST00000543601		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
5CDS-intron	ENST00000340353	ENST00000476851		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000532959	ENST00000285046		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000532959	ENST00000543601		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
5CDS-intron	ENST00000532959	ENST00000476851		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000305494	ENST00000285046		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000305494	ENST00000543601		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
5CDS-intron	ENST00000305494	ENST00000476851		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000535167	ENST00000285046		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
Frame-shit	ENST00000535167	ENST00000543601		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
5CDS-intron	ENST00000535167	ENST00000476851		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
intron-3CDS	ENST00000355734	ENST00000285046		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
intron-3CDS	ENST00000355734	ENST00000543601		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
intron-intron	ENST00000355734	ENST00000476851		TCGA	RV	BLCA	TCGA-DK-AA75-01A	TMEM135	chr11	86947726	+	FGD5	chr3	14922079	+
5CDS-intron	ENST00000397906	ENST00000409869		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TTC28	chr22	28559080	-	ARHGAP15	chr2	144525558	+
5CDS-intron	ENST00000397906	ENST00000295095		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TTC28	chr22	28559080	-	ARHGAP15	chr2	144525558	+
5CDS-intron	ENST00000397906	ENST00000473426		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TTC28	chr22	28559080	-	ARHGAP15	chr2	144525558	+
intron-intron	ENST00000490475	ENST00000409869		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TTC28	chr22	28559080	-	ARHGAP15	chr2	144525558	+
intron-intron	ENST00000490475	ENST00000295095		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TTC28	chr22	28559080	-	ARHGAP15	chr2	144525558	+
intron-intron	ENST00000490475	ENST00000473426		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TTC28	chr22	28559080	-	ARHGAP15	chr2	144525558	+
5CDS-5UTR	ENST00000449054	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000449054	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000449054	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000379238	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000379238	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000379238	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000360802	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000360802	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000360802	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000379239	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000379239	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000379239	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000539807	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000539807	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000539807	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000418786	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-intron	ENST00000418786	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000418786	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000379225	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-intron	ENST00000379225	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000379225	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000379235	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-intron	ENST00000379235	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000379235	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000480885	ENST00000379992		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-intron	ENST00000480885	ENST00000493941		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000480885	ENST00000308675		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	UBAP2	chr9	33932560	-	LINGO2	chr9	27950704	-
Frame-shit	ENST00000380680	ENST00000381527		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	UBL3	chr13	30423649	-	CDK8	chr13	26911704	+
Frame-shit	ENST00000380680	ENST00000536792		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	UBL3	chr13	30423649	-	CDK8	chr13	26911704	+
5CDS-intron	ENST00000380680	ENST00000480323		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	UBL3	chr13	30423649	-	CDK8	chr13	26911704	+
Frame-shit	ENST00000396787	ENST00000381196		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000360074		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000537002		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000397617		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000358503		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000397611		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000355233		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000356435		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
In-frame	ENST00000396787	ENST00000540109		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000486161		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000397606		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000396787	ENST00000463477		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
5CDS-intron	ENST00000396787	ENST00000471274		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000381196		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000360074		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000537002		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000397617		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000358503		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000397611		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000355233		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000356435		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
In-frame	ENST00000378495	ENST00000540109		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000486161		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000397606		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378495	ENST00000463477		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
5CDS-intron	ENST00000378495	ENST00000471274		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000381196		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000360074		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000537002		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000397617		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000358503		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000397611		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000355233		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000356435		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
In-frame	ENST00000378496	ENST00000540109		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000486161		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000397606		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
Frame-shit	ENST00000378496	ENST00000463477		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
5CDS-intron	ENST00000378496	ENST00000471274		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000381196		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000360074		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000537002		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000397617		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000358503		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000397611		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000355233		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000356435		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000540109		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000486161		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000397606		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-3CDS	ENST00000481299	ENST00000463477		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
intron-intron	ENST00000481299	ENST00000471274		TCGA	RV	BLCA	TCGA-CF-A27C-01A	UNC13B	chr9	35386290	+	PTPRD	chr9	8636844	-
In-frame	ENST00000219689	ENST00000328664		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
In-frame	ENST00000219689	ENST00000454452		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000219689	ENST00000423253		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000219689	ENST00000423810		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000219689	ENST00000568195		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000219689	ENST00000417538		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000219689	ENST00000342055		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000219689	ENST00000357542		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3CDS	ENST00000567975	ENST00000328664		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3CDS	ENST00000567975	ENST00000454452		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000567975	ENST00000423253		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000567975	ENST00000423810		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000567975	ENST00000568195		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000567975	ENST00000417538		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000567975	ENST00000342055		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000567975	ENST00000357542		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	USP31	chr16	23113640	-	RHD	chr1	25611064	+
intron-3CDS	ENST00000544301	ENST00000352140		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000544301	ENST00000594404		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000544301	ENST00000367376		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000544301	ENST00000442510		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000544301	ENST00000348564		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000544301	ENST00000598951		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000544301	ENST00000367364		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000544301	ENST00000413409		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000544301	ENST00000391970		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
Frame-shit	ENST00000224237	ENST00000352140		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
Frame-shit	ENST00000224237	ENST00000594404		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
Frame-shit	ENST00000224237	ENST00000367376		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
Frame-shit	ENST00000224237	ENST00000442510		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
Frame-shit	ENST00000224237	ENST00000348564		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
5CDS-intron	ENST00000224237	ENST00000598951		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
5CDS-intron	ENST00000224237	ENST00000367364		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
5CDS-intron	ENST00000224237	ENST00000413409		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
5CDS-intron	ENST00000224237	ENST00000391970		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000485947	ENST00000352140		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000485947	ENST00000594404		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000485947	ENST00000367376		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000485947	ENST00000442510		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-3CDS	ENST00000485947	ENST00000348564		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000485947	ENST00000598951		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000485947	ENST00000367364		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000485947	ENST00000413409		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
intron-intron	ENST00000485947	ENST00000391970		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	VIM	chr10	17279592	+	PTPRC	chr1	198710998	+
5CDS-intron	ENST00000310301	ENST00000381553		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000310301	ENST00000381542		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000310301	ENST00000360581		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000310301	ENST00000359791		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000310301	ENST00000531252		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000310301	ENST00000381539		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000310301	ENST00000465305		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000381553		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000381542		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000360581		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000359791		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000531252		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000381539		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5CDS-intron	ENST00000395969	ENST00000465305		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000381553		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000381542		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000360581		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000359791		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000531252		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000381539		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
intron-intron	ENST00000466017	ENST00000465305		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	VPS41	chr7	38908746	-	NPSR1	chr7	34851382	+
5UTR-5UTR	ENST00000409558	ENST00000358912		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	VPS54	chr2	64246072	-	PELI1	chr2	64335513	-
5UTR-5UTR	ENST00000409558	ENST00000466177		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	VPS54	chr2	64246072	-	PELI1	chr2	64335513	-
5UTR-5UTR	ENST00000272322	ENST00000358912		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	VPS54	chr2	64246072	-	PELI1	chr2	64335513	-
5UTR-5UTR	ENST00000272322	ENST00000466177		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	VPS54	chr2	64246072	-	PELI1	chr2	64335513	-
intron-5UTR	ENST00000354504	ENST00000358912		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	VPS54	chr2	64246072	-	PELI1	chr2	64335513	-
intron-5UTR	ENST00000354504	ENST00000466177		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	VPS54	chr2	64246072	-	PELI1	chr2	64335513	-
In-frame	ENST00000293217	ENST00000307877		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000293217	ENST00000539137		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000293217	ENST00000355113		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000293217	ENST00000602720		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000293217	ENST00000542536		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
Frame-shit	ENST00000537812	ENST00000307877		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000537812	ENST00000539137		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000537812	ENST00000355113		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000537812	ENST00000602720		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000537812	ENST00000542536		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
In-frame	ENST00000301608	ENST00000307877		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000301608	ENST00000539137		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000301608	ENST00000355113		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000301608	ENST00000602720		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000301608	ENST00000542536		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5UTR-3CDS	ENST00000591857	ENST00000307877		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5UTR-intron	ENST00000591857	ENST00000539137		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5UTR-5UTR	ENST00000591857	ENST00000355113		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5UTR-intron	ENST00000591857	ENST00000602720		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
5UTR-intron	ENST00000591857	ENST00000542536		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	ACOX1	chr17	73974615	-	SRP68	chr17	74063411	-
Frame-shit	ENST00000389811	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000389811	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000389811	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000389811	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000389811	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000389811	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000439055	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000439055	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000439055	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000439055	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000439055	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000439055	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000340561	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000340561	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000340561	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000340561	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000340561	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000340561	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000496981	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000496981	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000496981	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000496981	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000496981	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000496981	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	ACOXL	chr2	111850543	+	UNC5D	chr8	35406810	+
In-frame	ENST00000520552	ENST00000285402		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
5CDS-intron	ENST00000520552	ENST00000518835		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000335659	ENST00000285402		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-intron	ENST00000335659	ENST00000518835		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000519597	ENST00000285402		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-intron	ENST00000519597	ENST00000518835		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000520311	ENST00000285402		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-intron	ENST00000520311	ENST00000518835		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000519316	ENST00000285402		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-intron	ENST00000519316	ENST00000518835		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000524319	ENST00000285402		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
intron-intron	ENST00000524319	ENST00000518835		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ANKRD46	chr8	101534834	-	ODF1	chr8	103572680	+
In-frame	ENST00000265748	ENST00000403058		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
In-frame	ENST00000265748	ENST00000518318		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-3UTR	ENST00000265748	ENST00000517348		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000265748	ENST00000559001		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000265748	ENST00000464276		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
In-frame	ENST00000396068	ENST00000403058		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
In-frame	ENST00000396068	ENST00000518318		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-3UTR	ENST00000396068	ENST00000517348		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000396068	ENST00000559001		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000396068	ENST00000464276		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
intron-3CDS	ENST00000495714	ENST00000403058		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
intron-3CDS	ENST00000495714	ENST00000518318		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
intron-3UTR	ENST00000495714	ENST00000517348		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
intron-5UTR	ENST00000495714	ENST00000559001		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
intron-5UTR	ENST00000495714	ENST00000464276		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	ANLN	chr7	36483471	+	POU6F2	chr7	39125460	+
5CDS-intron	ENST00000356015	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000356015	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000356015	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000356015	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000356015	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000432560	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000432560	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000432560	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000432560	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000432560	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000357586	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000357586	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000357586	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000357586	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000357586	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405198	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405198	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405198	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405198	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405198	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000317368	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000317368	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000317368	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000317368	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000317368	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000402502	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000402502	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000402502	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000402502	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000402502	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000415447	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000415447	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000415447	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000415447	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000415447	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472057	ENST00000513761		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472057	ENST00000347613		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472057	ENST00000360642		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472057	ENST00000504131		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472057	ENST00000506924		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	AP1B1	chr22	29723671	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000336498	ENST00000296582		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARHGAP10	chr4	148803083	+	TMEM184C	chr4	148593018	+
5CDS-intron	ENST00000336498	ENST00000508208		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARHGAP10	chr4	148803083	+	TMEM184C	chr4	148593018	+
5UTR-intron	ENST00000414545	ENST00000296582		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARHGAP10	chr4	148803083	+	TMEM184C	chr4	148593018	+
5UTR-intron	ENST00000414545	ENST00000508208		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARHGAP10	chr4	148803083	+	TMEM184C	chr4	148593018	+
intron-intron	ENST00000510076	ENST00000296582		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARHGAP10	chr4	148803083	+	TMEM184C	chr4	148593018	+
intron-intron	ENST00000510076	ENST00000508208		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARHGAP10	chr4	148803083	+	TMEM184C	chr4	148593018	+
5UTR-3CDS	ENST00000368346	ENST00000368309		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	ASH1L	chr1	155531944	-	UBQLN4	chr1	156021648	-
5UTR-5UTR	ENST00000368346	ENST00000472638		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	ASH1L	chr1	155531944	-	UBQLN4	chr1	156021648	-
5UTR-3CDS	ENST00000392403	ENST00000368309		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	ASH1L	chr1	155531944	-	UBQLN4	chr1	156021648	-
5UTR-5UTR	ENST00000392403	ENST00000472638		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	ASH1L	chr1	155531944	-	UBQLN4	chr1	156021648	-
5UTR-3CDS	ENST00000548830	ENST00000368309		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	ASH1L	chr1	155531944	-	UBQLN4	chr1	156021648	-
5UTR-5UTR	ENST00000548830	ENST00000472638		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	ASH1L	chr1	155531944	-	UBQLN4	chr1	156021648	-
Frame-shit	ENST00000395863	ENST00000217246		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
Frame-shit	ENST00000395863	ENST00000310348		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000395863	ENST00000464883		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-5UTR	ENST00000395863	ENST00000402914		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000395863	ENST00000378058		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000395863	ENST00000407045		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
Frame-shit	ENST00000395864	ENST00000217246		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
Frame-shit	ENST00000395864	ENST00000310348		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000395864	ENST00000464883		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-5UTR	ENST00000395864	ENST00000402914		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000395864	ENST00000378058		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000395864	ENST00000407045		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
Frame-shit	ENST00000450594	ENST00000217246		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
Frame-shit	ENST00000450594	ENST00000310348		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000450594	ENST00000464883		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-5UTR	ENST00000450594	ENST00000402914		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000450594	ENST00000378058		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5CDS-intron	ENST00000450594	ENST00000407045		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5UTR-3CDS	ENST00000460817	ENST00000217246		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5UTR-3CDS	ENST00000460817	ENST00000310348		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5UTR-intron	ENST00000460817	ENST00000464883		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5UTR-5UTR	ENST00000460817	ENST00000402914		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5UTR-intron	ENST00000460817	ENST00000378058		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
5UTR-intron	ENST00000460817	ENST00000407045		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	BMP7	chr20	55777531	-	MACROD2	chr20	15412050	+
Frame-shit	ENST00000341865	ENST00000230361		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	C6orf132	chr6	42077954	-	GUCA1B	chr6	42156469	-
intron-3CDS	ENST00000356542	ENST00000230361		TCGA	RV	BLCA	TCGA-DK-A3IT-01A	C6orf132	chr6	42077954	-	GUCA1B	chr6	42156469	-
Frame-shit	ENST00000263119	ENST00000396573		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000263119	ENST00000562109		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000263119	ENST00000535259		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000263119	ENST00000404927		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000263119	ENST00000330684		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000263119	ENST00000396575		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
5CDS-intron	ENST00000263119	ENST00000566670		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000405822	ENST00000396573		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000405822	ENST00000562109		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000405822	ENST00000535259		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000405822	ENST00000404927		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000405822	ENST00000330684		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000405822	ENST00000396575		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
5CDS-intron	ENST00000405822	ENST00000566670		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000398319	ENST00000396573		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000398319	ENST00000562109		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000398319	ENST00000535259		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000398319	ENST00000404927		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000398319	ENST00000330684		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000398319	ENST00000396575		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
5CDS-intron	ENST00000398319	ENST00000566670		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000337989	ENST00000396573		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000337989	ENST00000562109		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000337989	ENST00000535259		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000337989	ENST00000404927		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000337989	ENST00000330684		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000337989	ENST00000396575		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-intron	ENST00000337989	ENST00000566670		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000485008	ENST00000396573		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000485008	ENST00000562109		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000485008	ENST00000535259		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000485008	ENST00000404927		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000485008	ENST00000330684		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-3CDS	ENST00000485008	ENST00000396575		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
intron-intron	ENST00000485008	ENST00000566670		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	CABIN1	chr22	24515665	+	GRIN2A	chr16	9984957	-
Frame-shit	ENST00000264645	ENST00000222345		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	CASC3	chr17	38297860	+	SIPA1L3	chr19	38696737	+
5CDS-intron	ENST00000264645	ENST00000476317		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	CASC3	chr17	38297860	+	SIPA1L3	chr19	38696737	+
Frame-shit	ENST00000342711	ENST00000320631		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CDC42BPG	chr11	64611882	-	EHD1	chr11	64627808	-
Frame-shit	ENST00000342711	ENST00000359393		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CDC42BPG	chr11	64611882	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000342711	ENST00000488711		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CDC42BPG	chr11	64611882	-	EHD1	chr11	64627808	-
intron-3CDS	ENST00000491280	ENST00000320631		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CDC42BPG	chr11	64611882	-	EHD1	chr11	64627808	-
intron-3CDS	ENST00000491280	ENST00000359393		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CDC42BPG	chr11	64611882	-	EHD1	chr11	64627808	-
intron-intron	ENST00000491280	ENST00000488711		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	CDC42BPG	chr11	64611882	-	EHD1	chr11	64627808	-
In-frame	ENST00000274695	ENST00000508802		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
In-frame	ENST00000274695	ENST00000261439		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000274695	ENST00000402522		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000274695	ENST00000407365		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-3CDS	ENST00000378624	ENST00000508802		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-3CDS	ENST00000378624	ENST00000261439		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-intron	ENST00000378624	ENST00000402522		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-intron	ENST00000378624	ENST00000407365		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
In-frame	ENST00000378610	ENST00000508802		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
In-frame	ENST00000378610	ENST00000261439		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000378610	ENST00000402522		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000378610	ENST00000407365		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-3CDS	ENST00000476517	ENST00000508802		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-3CDS	ENST00000476517	ENST00000261439		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-intron	ENST00000476517	ENST00000402522		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-intron	ENST00000476517	ENST00000407365		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	CDKAL1	chr6	20548936	+	TBC1D1	chr4	38091553	+
intron-3CDS	ENST00000588030	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588030	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588030	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588030	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588030	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000589660	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000589660	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000589660	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000589660	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000589660	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000588090	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588090	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588090	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588090	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000588090	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000591935	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000591935	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000591935	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000591935	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000591935	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000589710	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589710	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589710	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589710	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589710	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000588230	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000588230	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000588230	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000588230	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000588230	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000413636	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000413636	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000413636	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000413636	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000413636	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000586472	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000586472	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000586472	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000586472	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000586472	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000589686	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589686	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589686	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589686	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589686	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000444172	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000444172	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000444172	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000444172	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000444172	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000587323	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587323	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587323	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587323	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587323	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000320936	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000320936	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000320936	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000320936	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000320936	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000587896	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587896	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587896	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587896	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000587896	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3CDS	ENST00000589235	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589235	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589235	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589235	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5UTR-3UTR	ENST00000589235	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000585630	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000585630	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000585630	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000585630	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000585630	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000586773	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000586773	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000586773	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000586773	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000586773	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000590188	ENST00000263097		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000590188	ENST00000606983		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000590188	ENST00000348419		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000590188	ENST00000565096		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000590188	ENST00000562958		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	CIRBP	chr19	1269409	+	CNN2	chr19	1031070	+
5CDS-5UTR	ENST00000455089	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000455089	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-intron	ENST00000455089	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000342916	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-intron	ENST00000342916	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000344576	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-intron	ENST00000344576	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000420316	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-intron	ENST00000420316	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000275493	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-intron	ENST00000275493	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-5UTR	ENST00000442591	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
5CDS-intron	ENST00000442591	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-5UTR	ENST00000463948	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
3UTR-intron	ENST00000463948	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000398810		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000439599		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000398812		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000335866		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000402578		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000403097		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000406641		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000357271		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000407526		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000401949		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-5UTR	ENST00000454757	ENST00000402497		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
intron-intron	ENST00000454757	ENST00000483819		TCGA	RV	BLCA	TCGA-GC-A6I3-01A	EGFR	chr7	55087058	+	GRB10	chr7	50742355	-
Frame-shit	ENST00000233057	ENST00000234170		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	EIF2AK2	chr2	37362627	-	CEBPZ	chr2	37430151	-
Frame-shit	ENST00000395127	ENST00000234170		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	EIF2AK2	chr2	37362627	-	CEBPZ	chr2	37430151	-
Frame-shit	ENST00000405334	ENST00000234170		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	EIF2AK2	chr2	37362627	-	CEBPZ	chr2	37430151	-
In-frame	ENST00000371730	ENST00000343253		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
In-frame	ENST00000371730	ENST00000401026		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
In-frame	ENST00000371730	ENST00000338949		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5CDS-5UTR	ENST00000371730	ENST00000334652		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5CDS-5UTR	ENST00000371730	ENST00000557479		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5CDS-intron	ENST00000371730	ENST00000421014		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
In-frame	ENST00000371733	ENST00000343253		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
In-frame	ENST00000371733	ENST00000401026		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
In-frame	ENST00000371733	ENST00000338949		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5CDS-5UTR	ENST00000371733	ENST00000334652		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5CDS-5UTR	ENST00000371733	ENST00000557479		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5CDS-intron	ENST00000371733	ENST00000421014		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-3CDS	ENST00000396122	ENST00000343253		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-3CDS	ENST00000396122	ENST00000401026		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-3CDS	ENST00000396122	ENST00000338949		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-5UTR	ENST00000396122	ENST00000334652		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-5UTR	ENST00000396122	ENST00000557479		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-intron	ENST00000396122	ENST00000421014		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-3CDS	ENST00000493793	ENST00000343253		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-3CDS	ENST00000493793	ENST00000401026		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-3CDS	ENST00000493793	ENST00000338949		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-5UTR	ENST00000493793	ENST00000334652		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-5UTR	ENST00000493793	ENST00000557479		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
intron-intron	ENST00000493793	ENST00000421014		TCGA	RV	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93676359	+
5UTR-3CDS	ENST00000519824	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000519824	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000519824	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000519824	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000522746	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000522746	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000522746	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000522746	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000523509	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000523509	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000523509	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000523509	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000401979	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000401979	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000401979	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000401979	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000519110	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000519110	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000519110	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000519110	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
intron-3CDS	ENST00000522250	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
intron-3CDS	ENST00000522250	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
intron-intron	ENST00000522250	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
intron-intron	ENST00000522250	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000517654	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000517654	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000517654	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000517654	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000519540	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000519540	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000519540	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000519540	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000522941	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000522941	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000522941	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000522941	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000518879	ENST00000354567		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-3CDS	ENST00000518879	ENST00000344720		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000518879	ENST00000317704		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
5UTR-intron	ENST00000518879	ENST00000478255		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	FAM49B	chr8	130915558	-	AK5	chr1	77949002	+
intron-3CDS	ENST00000311172	ENST00000253925		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
intron-3CDS	ENST00000311172	ENST00000389547		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
intron-intron	ENST00000311172	ENST00000530548		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
In-frame	ENST00000409314	ENST00000253925		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
In-frame	ENST00000409314	ENST00000389547		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5CDS-intron	ENST00000409314	ENST00000530548		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
In-frame	ENST00000409418	ENST00000253925		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
In-frame	ENST00000409418	ENST00000389547		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5CDS-intron	ENST00000409418	ENST00000530548		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5UTR-3CDS	ENST00000458644	ENST00000253925		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5UTR-3CDS	ENST00000458644	ENST00000389547		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5UTR-intron	ENST00000458644	ENST00000530548		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5UTR-3CDS	ENST00000409853	ENST00000253925		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5UTR-3CDS	ENST00000409853	ENST00000389547		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
5UTR-intron	ENST00000409853	ENST00000530548		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
intron-3CDS	ENST00000409263	ENST00000253925		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
intron-3CDS	ENST00000409263	ENST00000389547		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
intron-intron	ENST00000409263	ENST00000530548		TCGA	RV	BLCA	TCGA-BT-A42C-01A	FCHSD2	chr11	72851076	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47T-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5CDS-5UTR	ENST00000490882	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000490882	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000429972	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000429972	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000295956	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000295956	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000358537	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000358537	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000357272	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000357272	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000348383	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000348383	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000493452	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000493452	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000419752	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000419752	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000484981	ENST00000262316		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000484981	ENST00000454039		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	FLNB	chr3	57994583	+	RHBDF1	chr16	115037	-
5UTR-3CDS	ENST00000368655	ENST00000372259		TCGA	RV	BLCA	TCGA-BT-A20T-01A	GATAD2B	chr1	153895209	-	ERI3	chr1	44785416	-
5UTR-3CDS	ENST00000368655	ENST00000372257		TCGA	RV	BLCA	TCGA-BT-A20T-01A	GATAD2B	chr1	153895209	-	ERI3	chr1	44785416	-
5UTR-5UTR	ENST00000368655	ENST00000537474		TCGA	RV	BLCA	TCGA-BT-A20T-01A	GATAD2B	chr1	153895209	-	ERI3	chr1	44785416	-
5UTR-5UTR	ENST00000368655	ENST00000495828		TCGA	RV	BLCA	TCGA-BT-A20T-01A	GATAD2B	chr1	153895209	-	ERI3	chr1	44785416	-
Frame-shit	ENST00000369983	ENST00000263228		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	GBF1	chr10	104103939	+	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000476019	ENST00000263228		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	GBF1	chr10	104103939	+	UBE2R2	chr9	33886879	+
5UTR-5UTR	ENST00000309156	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-5UTR	ENST00000309156	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-5UTR	ENST00000309156	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309156	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-5UTR	ENST00000309185	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-5UTR	ENST00000309185	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-5UTR	ENST00000309185	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5UTR-intron	ENST00000309185	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394211	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394211	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394211	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394211	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000578702	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000578702	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000578702	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000578702	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000445327	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000445327	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000445327	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000445327	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394209	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394209	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394209	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394209	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394204	ENST00000584601		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394204	ENST00000406381		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000541774		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000445658		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000540147		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000584450		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000269571		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-5UTR	ENST00000394204	ENST00000578199		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000540042		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
intron-intron	ENST00000394204	ENST00000584888		TCGA	RV	BLCA	TCGA-GU-AATP-01A	GRB7	chr17	37894386	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000251808	ENST00000381323		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000251808	ENST00000355549		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000251808	ENST00000406434		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000395927	ENST00000381323		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000395927	ENST00000355549		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000395927	ENST00000406434		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
intron-5UTR	ENST00000517674	ENST00000381323		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
intron-5UTR	ENST00000517674	ENST00000355549		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
intron-5UTR	ENST00000517674	ENST00000406434		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	GRHL2	chr8	102661727	+	FAM49A	chr2	16769397	-
In-frame	ENST00000526355	ENST00000407008		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
5CDS-intron	ENST00000526355	ENST00000583517		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
5CDS-intron	ENST00000526355	ENST00000582037		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
In-frame	ENST00000282249	ENST00000407008		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
5CDS-intron	ENST00000282249	ENST00000583517		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
5CDS-intron	ENST00000282249	ENST00000582037		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
In-frame	ENST00000347596	ENST00000407008		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
5CDS-intron	ENST00000347596	ENST00000583517		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
5CDS-intron	ENST00000347596	ENST00000582037		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	GUCY1A2	chr11	106647165	-	NLK	chr17	26512205	+
Frame-shit	ENST00000326877	ENST00000274695		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000326877	ENST00000378624		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000326877	ENST00000378610		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5CDS-intron	ENST00000326877	ENST00000476517		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-3CDS	ENST00000539056	ENST00000274695		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-3CDS	ENST00000539056	ENST00000378624		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-3CDS	ENST00000539056	ENST00000378610		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-intron	ENST00000539056	ENST00000476517		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000382224	ENST00000274695		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000382224	ENST00000378624		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000382224	ENST00000378610		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
intron-intron	ENST00000382224	ENST00000476517		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000382226	ENST00000274695		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000382226	ENST00000378624		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000382226	ENST00000378610		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5CDS-intron	ENST00000382226	ENST00000476517		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-3CDS	ENST00000512376	ENST00000274695		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-3CDS	ENST00000512376	ENST00000378624		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-3CDS	ENST00000512376	ENST00000378610		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
5UTR-intron	ENST00000512376	ENST00000476517		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	LCORL	chr4	18023221	-	CDKAL1	chr6	20955650	+
In-frame	ENST00000524419	ENST00000278360		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000524419	ENST00000378880		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000524419	ENST00000378878		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000524419	ENST00000532848		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
5CDS-intron	ENST00000524419	ENST00000534803		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000528989	ENST00000278360		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000528989	ENST00000378880		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000528989	ENST00000378878		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000528989	ENST00000532848		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
5CDS-intron	ENST00000528989	ENST00000534803		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000315571	ENST00000278360		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000315571	ENST00000378880		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000315571	ENST00000378878		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
In-frame	ENST00000315571	ENST00000532848		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
5CDS-intron	ENST00000315571	ENST00000534803		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
intron-3CDS	ENST00000529759	ENST00000278360		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
intron-3CDS	ENST00000529759	ENST00000378880		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
intron-3CDS	ENST00000529759	ENST00000378878		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
intron-3CDS	ENST00000529759	ENST00000532848		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
intron-intron	ENST00000529759	ENST00000534803		TCGA	RV	BLCA	TCGA-XF-AAN7-01A	LDLRAD3	chr11	35965694	+	PAMR1	chr11	35463241	-
Frame-shit	ENST00000526589	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000526589	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000527974	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000527974	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000352231	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000352231	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000341872	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000341872	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000450372	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000450372	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000366584	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000366584	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000416919	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000416919	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000323938	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000323938	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000526634	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000526634	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
Frame-shit	ENST00000525042	ENST00000334232		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
In-frame	ENST00000525042	ENST00000359362		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	LGALS8	chr1	236708215	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000371837	ENST00000453848		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
intron-3CDS	ENST00000371837	ENST00000005286		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
intron-intron	ENST00000371837	ENST00000543732		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
intron-3CDS	ENST00000487618	ENST00000453848		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
intron-3CDS	ENST00000487618	ENST00000005286		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
intron-intron	ENST00000487618	ENST00000543732		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
Frame-shit	ENST00000336233	ENST00000453848		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
Frame-shit	ENST00000336233	ENST00000005286		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
5CDS-intron	ENST00000336233	ENST00000543732		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
Frame-shit	ENST00000456827	ENST00000453848		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
Frame-shit	ENST00000456827	ENST00000005286		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
5CDS-intron	ENST00000456827	ENST00000543732		TCGA	RV	BLCA	TCGA-FD-A62N-01A	LIPA	chr10	91005433	-	TMEM132A	chr11	60694676	+
5CDS-intron	ENST00000368468	ENST00000290219		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	MAN1A1	chr6	119623153	-	IFNGR2	chr21	34851105	+
5CDS-intron	ENST00000368468	ENST00000381995		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	MAN1A1	chr6	119623153	-	IFNGR2	chr21	34851105	+
5CDS-intron	ENST00000368468	ENST00000405436		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	MAN1A1	chr6	119623153	-	IFNGR2	chr21	34851105	+
5CDS-intron	ENST00000368466	ENST00000290219		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	MAN1A1	chr6	119623153	-	IFNGR2	chr21	34851105	+
5CDS-intron	ENST00000368466	ENST00000381995		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	MAN1A1	chr6	119623153	-	IFNGR2	chr21	34851105	+
5CDS-intron	ENST00000368466	ENST00000405436		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	MAN1A1	chr6	119623153	-	IFNGR2	chr21	34851105	+
5CDS-intron	ENST00000399503	ENST00000568211		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MAP3K1	chr5	56155742	+	OR4N2	chr14	20201528	+
5CDS-intron	ENST00000399503	ENST00000315947		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MAP3K1	chr5	56155742	+	OR4N2	chr14	20201528	+
Frame-shit	ENST00000221214	ENST00000318006		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000221214	ENST00000348544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
5CDS-intron	ENST00000221214	ENST00000568357		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000457542	ENST00000318006		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000457542	ENST00000348544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
5CDS-intron	ENST00000457542	ENST00000568357		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
intron-3CDS	ENST00000260357	ENST00000318006		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
intron-3CDS	ENST00000260357	ENST00000348544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
intron-intron	ENST00000260357	ENST00000568357		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000456763	ENST00000318006		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000456763	ENST00000348544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
5CDS-intron	ENST00000456763	ENST00000568357		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000514566	ENST00000318006		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
Frame-shit	ENST00000514566	ENST00000348544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
5CDS-intron	ENST00000514566	ENST00000568357		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
3UTR-3CDS	ENST00000507762	ENST00000318006		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
3UTR-3CDS	ENST00000507762	ENST00000348544		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
3UTR-intron	ENST00000507762	ENST00000568357		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	MAPKBP1	chr15	42092112	+	VPS39	chr15	42455926	-
In-frame	ENST00000262027	ENST00000537442		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000262027	ENST00000382421		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000262027	ENST00000545200		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000262027	ENST00000399466		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000262027	ENST00000322166		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000262027	ENST00000541778		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
5CDS-intron	ENST00000262027	ENST00000542015		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
5CDS-intron	ENST00000262027	ENST00000545915		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
5CDS-intron	ENST00000262027	ENST00000540228		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000315473	ENST00000537442		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000315473	ENST00000382421		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000315473	ENST00000545200		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000315473	ENST00000399466		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000315473	ENST00000322166		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
In-frame	ENST00000315473	ENST00000541778		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
5CDS-intron	ENST00000315473	ENST00000542015		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
5CDS-intron	ENST00000315473	ENST00000545915		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
5CDS-intron	ENST00000315473	ENST00000540228		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-3CDS	ENST00000447721	ENST00000537442		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-3CDS	ENST00000447721	ENST00000382421		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-3CDS	ENST00000447721	ENST00000545200		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-3CDS	ENST00000447721	ENST00000399466		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-3CDS	ENST00000447721	ENST00000322166		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-3CDS	ENST00000447721	ENST00000541778		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-intron	ENST00000447721	ENST00000542015		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-intron	ENST00000447721	ENST00000545915		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
3UTR-intron	ENST00000447721	ENST00000540228		TCGA	RV	BLCA	TCGA-DK-A3IM-01A	MARS	chr12	57898082	+	NOP2	chr12	6673112	-
Frame-shit	ENST00000229854	ENST00000371253		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-5UTR	ENST00000229854	ENST00000449332		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-intron	ENST00000229854	ENST00000283297		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-intron	ENST00000229854	ENST00000371243		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
Frame-shit	ENST00000596288	ENST00000371253		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-5UTR	ENST00000596288	ENST00000449332		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-intron	ENST00000596288	ENST00000283297		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-intron	ENST00000596288	ENST00000371243		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
Frame-shit	ENST00000419835	ENST00000371253		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-5UTR	ENST00000419835	ENST00000449332		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-intron	ENST00000419835	ENST00000283297		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-intron	ENST00000419835	ENST00000371243		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
intron-3CDS	ENST00000476448	ENST00000371253		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
intron-5UTR	ENST00000476448	ENST00000449332		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
intron-intron	ENST00000476448	ENST00000283297		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
intron-intron	ENST00000476448	ENST00000371243		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MCM3	chr6	52146843	-	GPR110	chr6	46991953	-
5CDS-5UTR	ENST00000309993	ENST00000383202		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
5CDS-5UTR	ENST00000309993	ENST00000236698		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
5CDS-5UTR	ENST00000309993	ENST00000434713		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
5CDS-5UTR	ENST00000309993	ENST00000480733		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
5CDS-intron	ENST00000309993	ENST00000536929		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
intron-5UTR	ENST00000434835	ENST00000383202		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
intron-5UTR	ENST00000434835	ENST00000236698		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
intron-5UTR	ENST00000434835	ENST00000434713		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
intron-5UTR	ENST00000434835	ENST00000480733		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
intron-intron	ENST00000434835	ENST00000536929		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	MSL2	chr3	135913814	-	STAG1	chr3	136349823	-
In-frame	ENST00000361671	ENST00000361069		TCGA	RV	BLCA	TCGA-CU-A3YL-01A	NAA35	chr9	88628812	+	LAMC3	chr9	133951218	+
5CDS-intron	ENST00000361671	ENST00000480883		TCGA	RV	BLCA	TCGA-CU-A3YL-01A	NAA35	chr9	88628812	+	LAMC3	chr9	133951218	+
intron-3CDS	ENST00000376040	ENST00000361069		TCGA	RV	BLCA	TCGA-CU-A3YL-01A	NAA35	chr9	88628812	+	LAMC3	chr9	133951218	+
intron-intron	ENST00000376040	ENST00000480883		TCGA	RV	BLCA	TCGA-CU-A3YL-01A	NAA35	chr9	88628812	+	LAMC3	chr9	133951218	+
In-frame	ENST00000264596	ENST00000264595		TCGA	RV	BLCA	TCGA-KQ-A41P-01A	NEIL3	chr4	178272703	+	AGA	chr4	178352962	-
5CDS-intron	ENST00000264596	ENST00000506853		TCGA	RV	BLCA	TCGA-KQ-A41P-01A	NEIL3	chr4	178272703	+	AGA	chr4	178352962	-
In-frame	ENST00000233027	ENST00000409792		TCGA	RV	BLCA	TCGA-DK-A1AF-01A	NEK4	chr3	52771602	-	SETD2	chr3	47108608	-
5CDS-5UTR	ENST00000233027	ENST00000492397		TCGA	RV	BLCA	TCGA-DK-A1AF-01A	NEK4	chr3	52771602	-	SETD2	chr3	47108608	-
In-frame	ENST00000535191	ENST00000409792		TCGA	RV	BLCA	TCGA-DK-A1AF-01A	NEK4	chr3	52771602	-	SETD2	chr3	47108608	-
5CDS-5UTR	ENST00000535191	ENST00000492397		TCGA	RV	BLCA	TCGA-DK-A1AF-01A	NEK4	chr3	52771602	-	SETD2	chr3	47108608	-
intron-3CDS	ENST00000383721	ENST00000409792		TCGA	RV	BLCA	TCGA-DK-A1AF-01A	NEK4	chr3	52771602	-	SETD2	chr3	47108608	-
intron-5UTR	ENST00000383721	ENST00000492397		TCGA	RV	BLCA	TCGA-DK-A1AF-01A	NEK4	chr3	52771602	-	SETD2	chr3	47108608	-
intron-intron	ENST00000427025	ENST00000526660		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000427025	ENST00000289575		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000427025	ENST00000341411		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000427025	ENST00000532236		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000427025	ENST00000531756		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000427025	ENST00000525650		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000427025	ENST00000454962		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000427025	ENST00000428359		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000343505	ENST00000526660		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000343505	ENST00000289575		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000343505	ENST00000341411		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000343505	ENST00000532236		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000343505	ENST00000531756		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000343505	ENST00000525650		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000343505	ENST00000454962		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000343505	ENST00000428359		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000479393	ENST00000526660		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000479393	ENST00000289575		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000479393	ENST00000341411		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000479393	ENST00000532236		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000479393	ENST00000531756		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000479393	ENST00000525650		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000479393	ENST00000454962		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000479393	ENST00000428359		TCGA	RV	BLCA	TCGA-GV-A40E-01A	NHSL1	chr6	138763120	-	SLCO2B1	chr11	74873700	+
5UTR-3CDS	ENST00000282516	ENST00000282469		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000282516	ENST00000509059		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000282516	ENST00000356031		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000282516	ENST00000440995		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-intron	ENST00000282516	ENST00000303129		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000448238	ENST00000282469		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000448238	ENST00000509059		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000448238	ENST00000356031		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-3CDS	ENST00000448238	ENST00000440995		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
5UTR-intron	ENST00000448238	ENST00000303129		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
intron-3CDS	ENST00000504430	ENST00000282469		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
intron-3CDS	ENST00000504430	ENST00000509059		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
intron-3CDS	ENST00000504430	ENST00000356031		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
intron-3CDS	ENST00000504430	ENST00000440995		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
intron-intron	ENST00000504430	ENST00000303129		TCGA	RV	BLCA	TCGA-FJ-A3Z7-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35659121	+
intron-3CDS	ENST00000519301	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000519301	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000520407	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000520407	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000523079	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000523079	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000338921	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000338921	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000356819	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000356819	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000287845	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000287845	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000341377	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000341377	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000287842	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000287842	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000521670	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000521670	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000405005	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
Frame-shit	ENST00000405005	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000520502	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000520502	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000539990	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000539990	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000523681	ENST00000359499		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000523681	ENST00000304620		TCGA	RV	BLCA	TCGA-CF-A3MI-01A	NRG1	chr8	32406344	+	KRT78	chr12	53233768	-
intron-3CDS	ENST00000422090	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000413454	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000352066	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000597029	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000597723	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000596217	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000600583	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50432607	-	VSTM2B	chr19	30054753	+
5CDS-3UTR	ENST00000245544	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000245544	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000245544	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-3UTR	ENST00000541827	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000541827	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000541827	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-3UTR	ENST00000579324	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000579324	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000579324	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
3UTR-3UTR	ENST00000449421	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
3UTR-5UTR	ENST00000449421	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
3UTR-5UTR	ENST00000449421	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-3UTR	ENST00000579298	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000579298	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000579298	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-3UTR	ENST00000447371	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000447371	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
5CDS-5UTR	ENST00000447371	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
intron-3UTR	ENST00000540768	ENST00000584767		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
intron-5UTR	ENST00000540768	ENST00000581589		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
intron-5UTR	ENST00000540768	ENST00000322444		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	NUP85	chr17	73209214	+	KCTD2	chr17	73045315	+
In-frame	ENST00000391875	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000391875	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000391875	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5CDS-intron	ENST00000391875	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000281701	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000281701	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000281701	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5CDS-intron	ENST00000281701	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000469075	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000469075	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
In-frame	ENST00000469075	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5CDS-intron	ENST00000469075	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5UTR-3CDS	ENST00000482491	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5UTR-3CDS	ENST00000482491	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5UTR-3CDS	ENST00000482491	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5UTR-intron	ENST00000482491	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000340871	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000340871	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000340871	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5CDS-intron	ENST00000340871	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000361463	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000361463	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000361463	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
5CDS-intron	ENST00000361463	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
intron-3CDS	ENST00000468673	ENST00000265537		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
intron-3CDS	ENST00000468673	ENST00000415258		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
intron-3CDS	ENST00000468673	ENST00000414984		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
intron-intron	ENST00000468673	ENST00000467936		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	NVL	chr1	224492736	-	LARS2	chr3	45583321	+
Frame-shit	ENST00000224950	ENST00000362003		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000224950	ENST00000400151		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000224950	ENST00000482726		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000224950	ENST00000470161		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000224950	ENST00000521023		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000224950	ENST00000505655		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
Frame-shit	ENST00000369764	ENST00000362003		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000369764	ENST00000400151		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000369764	ENST00000482726		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000369764	ENST00000470161		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000369764	ENST00000521023		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5CDS-intron	ENST00000369764	ENST00000505655		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-3CDS	ENST00000466828	ENST00000362003		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-intron	ENST00000466828	ENST00000400151		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-intron	ENST00000466828	ENST00000482726		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-intron	ENST00000466828	ENST00000470161		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-intron	ENST00000466828	ENST00000521023		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-intron	ENST00000466828	ENST00000505655		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	OBFC1	chr10	105664849	-	PCGF3	chr4	755067	+
5UTR-intron	ENST00000362003	ENST00000509959		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000362003	ENST00000451821		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000362003	ENST00000507779		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000400151	ENST00000509959		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000400151	ENST00000451821		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000400151	ENST00000507779		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
3UTR-intron	ENST00000482726	ENST00000509959		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
3UTR-intron	ENST00000482726	ENST00000451821		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
3UTR-intron	ENST00000482726	ENST00000507779		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000470161	ENST00000509959		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000470161	ENST00000451821		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000470161	ENST00000507779		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000521023	ENST00000509959		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000521023	ENST00000451821		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
5UTR-intron	ENST00000521023	ENST00000507779		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
intron-intron	ENST00000505655	ENST00000509959		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
intron-intron	ENST00000505655	ENST00000451821		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
intron-intron	ENST00000505655	ENST00000507779		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	PCGF3	chr4	699759	+	SPATA24	chr5	138738382	-
Frame-shit	ENST00000395346	ENST00000321765		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	PIGS	chr17	26883184	-	SPAG5	chr17	26905310	-
Frame-shit	ENST00000308360	ENST00000321765		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	PIGS	chr17	26883184	-	SPAG5	chr17	26905310	-
Frame-shit	ENST00000543734	ENST00000321765		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	PIGS	chr17	26883184	-	SPAG5	chr17	26905310	-
intron-3CDS	ENST00000465444	ENST00000321765		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	PIGS	chr17	26883184	-	SPAG5	chr17	26905310	-
5CDS-3UTR	ENST00000240617	ENST00000540224		TCGA	RV	BLCA	TCGA-BT-A20T-01A	PLBD1	chr12	14688593	-	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000240617	ENST00000228865		TCGA	RV	BLCA	TCGA-BT-A20T-01A	PLBD1	chr12	14688593	-	CREBL2	chr12	12788711	+
intron-intron	ENST00000309364	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000309364	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000309364	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000309364	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000309364	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000359180	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000359180	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000359180	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000359180	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000359180	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000317589	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000317589	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000317589	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000317589	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000317589	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000355397	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000355397	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000355397	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000355397	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000355397	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000429027	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000429027	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000429027	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000429027	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000429027	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000539256	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000539256	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000539256	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000539256	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000539256	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000299275	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000299275	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000299275	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000299275	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000299275	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000538714	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000538714	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000538714	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000538714	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000538714	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000543806	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000543806	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000543806	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000543806	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000543806	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000424268	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000424268	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000424268	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000424268	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
5CDS-intron	ENST00000424268	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000540972	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000540972	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000540972	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000540972	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000540972	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000510738	ENST00000535651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000510738	ENST00000433979		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000510738	ENST00000538779		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000510738	ENST00000266497		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
intron-intron	ENST00000510738	ENST00000536967		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	PLEKHA5	chr12	19489550	+	PIK3C2G	chr12	18715637	+
Frame-shit	ENST00000413366	ENST00000356175		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
Frame-shit	ENST00000413366	ENST00000358273		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000413366	ENST00000431387		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
5CDS-3UTR	ENST00000413366	ENST00000581113		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000413366	ENST00000417592		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000413366	ENST00000444181		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
3UTR-3CDS	ENST00000583361	ENST00000356175		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
3UTR-3CDS	ENST00000583361	ENST00000358273		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
3UTR-intron	ENST00000583361	ENST00000431387		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
3UTR-3UTR	ENST00000583361	ENST00000581113		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
3UTR-intron	ENST00000583361	ENST00000417592		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
3UTR-intron	ENST00000583361	ENST00000444181		TCGA	RV	BLCA	TCGA-4Z-AA86-01A	PRKCA	chr17	64302245	+	NF1	chr17	29652838	+
5UTR-intron	ENST00000262094	ENST00000589935		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	RAB27B	chr18	52495931	+	WDR7	chr18	54547175	+
5UTR-intron	ENST00000262094	ENST00000357574		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	RAB27B	chr18	52495931	+	WDR7	chr18	54547175	+
5UTR-intron	ENST00000262094	ENST00000254442		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	RAB27B	chr18	52495931	+	WDR7	chr18	54547175	+
3UTR-intron	ENST00000586594	ENST00000589935		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	RAB27B	chr18	52495931	+	WDR7	chr18	54547175	+
3UTR-intron	ENST00000586594	ENST00000357574		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	RAB27B	chr18	52495931	+	WDR7	chr18	54547175	+
3UTR-intron	ENST00000586594	ENST00000254442		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	RAB27B	chr18	52495931	+	WDR7	chr18	54547175	+
In-frame	ENST00000348370	ENST00000380516		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000348370	ENST00000536328		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000348370	ENST00000557950		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
In-frame	ENST00000434298	ENST00000380516		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000434298	ENST00000536328		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000434298	ENST00000557950		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
In-frame	ENST00000559209	ENST00000380516		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000559209	ENST00000536328		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000559209	ENST00000557950		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
In-frame	ENST00000557998	ENST00000380516		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000557998	ENST00000536328		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000557998	ENST00000557950		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
In-frame	ENST00000561186	ENST00000380516		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000561186	ENST00000536328		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
5CDS-5UTR	ENST00000561186	ENST00000557950		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
intron-3CDS	ENST00000560080	ENST00000380516		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
intron-5UTR	ENST00000560080	ENST00000536328		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
intron-5UTR	ENST00000560080	ENST00000557950		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	RNF111	chr15	59359282	+	SLTM	chr15	59193486	-
intron-3CDS	ENST00000455600	ENST00000377707		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	RUSC2	chr9	35490169	+	SHB	chr9	38016128	-
intron-3CDS	ENST00000455600	ENST00000377700		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	RUSC2	chr9	35490169	+	SHB	chr9	38016128	-
intron-3CDS	ENST00000468041	ENST00000377707		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	RUSC2	chr9	35490169	+	SHB	chr9	38016128	-
intron-3CDS	ENST00000468041	ENST00000377700		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	RUSC2	chr9	35490169	+	SHB	chr9	38016128	-
Frame-shit	ENST00000307877	ENST00000409728		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000307877	ENST00000409043		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000307877	ENST00000409195		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000307877	ENST00000409756		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000307877	ENST00000420519		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000307877	ENST00000295237		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000307877	ENST00000409273		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000307877	ENST00000409605		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000539137	ENST00000409728		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000539137	ENST00000409043		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000539137	ENST00000409195		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000539137	ENST00000409756		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000539137	ENST00000420519		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000539137	ENST00000295237		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000539137	ENST00000409273		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000539137	ENST00000409605		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000355113	ENST00000409728		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000355113	ENST00000409043		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000355113	ENST00000409195		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000355113	ENST00000409756		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000355113	ENST00000420519		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000355113	ENST00000295237		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000355113	ENST00000409273		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000355113	ENST00000409605		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000602720	ENST00000409728		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000602720	ENST00000409043		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000602720	ENST00000409195		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000602720	ENST00000409756		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000602720	ENST00000420519		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000602720	ENST00000295237		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000602720	ENST00000409273		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000602720	ENST00000409605		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000542536	ENST00000409728		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000542536	ENST00000409043		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000542536	ENST00000409195		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000542536	ENST00000409756		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000542536	ENST00000420519		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000542536	ENST00000295237		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000542536	ENST00000409273		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000542536	ENST00000409605		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	SRP68	chr17	74053484	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000456845	ENST00000307599		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
In-frame	ENST00000456845	ENST00000518826		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
In-frame	ENST00000412303	ENST00000307599		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
Frame-shit	ENST00000412303	ENST00000518826		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
In-frame	ENST00000456397	ENST00000307599		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
Frame-shit	ENST00000456397	ENST00000518826		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
Frame-shit	ENST00000397070	ENST00000307599		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
Frame-shit	ENST00000397070	ENST00000518826		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
5UTR-3CDS	ENST00000522434	ENST00000307599		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
5UTR-3CDS	ENST00000522434	ENST00000518826		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792733	-
Frame-shit	ENST00000274456	ENST00000311085		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
Frame-shit	ENST00000274456	ENST00000539542		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
5CDS-3UTR	ENST00000274456	ENST00000505312		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000513374	ENST00000311085		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000513374	ENST00000539542		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3UTR	ENST00000513374	ENST00000505312		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000504771	ENST00000311085		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000504771	ENST00000539542		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3UTR	ENST00000504771	ENST00000505312		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000503646	ENST00000311085		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000503646	ENST00000539542		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3UTR	ENST00000503646	ENST00000505312		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000504642	ENST00000311085		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000504642	ENST00000539542		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3UTR	ENST00000504642	ENST00000505312		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000415806	ENST00000311085		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3CDS	ENST00000415806	ENST00000539542		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
intron-3UTR	ENST00000415806	ENST00000505312		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118576114	+
5CDS-5UTR	ENST00000305364	ENST00000398160		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000305364	ENST00000398169		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000305364	ENST00000358932		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000305364	ENST00000437553		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-intron	ENST00000305364	ENST00000353689		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-intron	ENST00000305364	ENST00000398163		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000305364	ENST00000557114		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000521253	ENST00000398160		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000521253	ENST00000398169		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000521253	ENST00000358932		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000521253	ENST00000437553		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000521253	ENST00000353689		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000521253	ENST00000398163		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000521253	ENST00000557114		TCGA	RV	BLCA	TCGA-SY-A9G0-01A	TRIM35	chr8	27155981	-	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000314571	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000314571	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000383797	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000454502	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000402228	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000444864	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000284995	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000415684	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000397010		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000309576		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000397015		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000397012		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000397026		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000397000		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000539812		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000475595	ENST00000287820		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	TSEN2	chr3	12560696	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000262144	ENST00000336257		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	WDR59	chr16	74922067	-	CHST5	chr16	75567081	-
5CDS-intron	ENST00000262144	ENST00000541075		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	WDR59	chr16	74922067	-	CHST5	chr16	75567081	-
intron-5UTR	ENST00000562331	ENST00000336257		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	WDR59	chr16	74922067	-	CHST5	chr16	75567081	-
intron-intron	ENST00000562331	ENST00000541075		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	WDR59	chr16	74922067	-	CHST5	chr16	75567081	-
3UTR-3CDS	ENST00000494757	ENST00000398532		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
3UTR-3CDS	ENST00000494757	ENST00000577454		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
3UTR-3CDS	ENST00000494757	ENST00000578648		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
3UTR-5UTR	ENST00000494757	ENST00000579565		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000323571	ENST00000398532		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000323571	ENST00000577454		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000323571	ENST00000578648		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-5UTR	ENST00000323571	ENST00000579565		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000585043	ENST00000398532		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000585043	ENST00000577454		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000585043	ENST00000578648		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-5UTR	ENST00000585043	ENST00000579565		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000394103	ENST00000398532		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000394103	ENST00000577454		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000394103	ENST00000578648		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-5UTR	ENST00000394103	ENST00000579565		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000536600	ENST00000398532		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000536600	ENST00000577454		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-3CDS	ENST00000536600	ENST00000578648		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
5UTR-5UTR	ENST00000536600	ENST00000579565		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000583130	ENST00000398532		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000583130	ENST00000577454		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000583130	ENST00000578648		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
intron-5UTR	ENST00000583130	ENST00000579565		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	WIPF2	chr17	38375744	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000487273	ENST00000287272		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000487273	ENST00000453357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000487273	ENST00000404895		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000487273	ENST00000420357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000487273	ENST00000416672		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000487273	ENST00000449677		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000466936	ENST00000287272		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000466936	ENST00000453357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000466936	ENST00000404895		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000466936	ENST00000420357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000466936	ENST00000416672		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000466936	ENST00000449677		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000481513	ENST00000287272		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000481513	ENST00000453357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000481513	ENST00000404895		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000481513	ENST00000420357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000481513	ENST00000416672		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000481513	ENST00000449677		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000484143	ENST00000287272		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000484143	ENST00000453357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000484143	ENST00000404895		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000484143	ENST00000420357		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000484143	ENST00000416672		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000484143	ENST00000449677		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	ADAM9	chr8	38884329	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000395146	ENST00000427191		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
Frame-shit	ENST00000395146	ENST00000436978		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
5CDS-intron	ENST00000395146	ENST00000502971		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
5CDS-intron	ENST00000395146	ENST00000411767		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
5CDS-intron	ENST00000395146	ENST00000316707		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
5CDS-intron	ENST00000395146	ENST00000511467		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-3CDS	ENST00000307808	ENST00000427191		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-3CDS	ENST00000307808	ENST00000436978		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000307808	ENST00000502971		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000307808	ENST00000411767		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000307808	ENST00000316707		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000307808	ENST00000511467		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-3CDS	ENST00000544085	ENST00000427191		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-3CDS	ENST00000544085	ENST00000436978		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000544085	ENST00000502971		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000544085	ENST00000411767		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000544085	ENST00000316707		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
intron-intron	ENST00000544085	ENST00000511467		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
3UTR-3CDS	ENST00000511996	ENST00000427191		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
3UTR-3CDS	ENST00000511996	ENST00000436978		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
3UTR-intron	ENST00000511996	ENST00000502971		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
3UTR-intron	ENST00000511996	ENST00000411767		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
3UTR-intron	ENST00000511996	ENST00000316707		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
3UTR-intron	ENST00000511996	ENST00000511467		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87637683	+
Frame-shit	ENST00000350026	ENST00000356284		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000350026	ENST00000354536		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
5CDS-intron	ENST00000350026	ENST00000477998		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000346085	ENST00000356284		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000346085	ENST00000354536		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
5CDS-intron	ENST00000346085	ENST00000477998		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000367148	ENST00000356284		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000367148	ENST00000354536		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
5CDS-intron	ENST00000367148	ENST00000477998		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000275248	ENST00000356284		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
Frame-shit	ENST00000275248	ENST00000354536		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
5CDS-intron	ENST00000275248	ENST00000477998		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
intron-3CDS	ENST00000478761	ENST00000356284		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
intron-3CDS	ENST00000478761	ENST00000354536		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
intron-intron	ENST00000478761	ENST00000477998		TCGA	RV	BLCA	TCGA-FD-A6TI-01A	ARID1B	chr6	157150555	+	SMOC2	chr6	169051361	+
5CDS-5UTR	ENST00000321990	ENST00000370651		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	ATAD5	chr17	29187630	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000321990	ENST00000370650		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	ATAD5	chr17	29187630	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000321990	ENST00000578299		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	ATAD5	chr17	29187630	+	PTP4A1	chr6	64286341	+
5CDS-3UTR	ENST00000321990	ENST00000473334		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	ATAD5	chr17	29187630	+	PTP4A1	chr6	64286341	+
In-frame	ENST00000369762	ENST00000369951		TCGA	RV	BLCA	TCGA-FD-A62P-01A	ATP6AP1	chrX	153657520	+	OPN1LW	chrX	153421769	+
5CDS-3UTR	ENST00000369762	ENST00000463296		TCGA	RV	BLCA	TCGA-FD-A62P-01A	ATP6AP1	chrX	153657520	+	OPN1LW	chrX	153421769	+
intron-3CDS	ENST00000484908	ENST00000369951		TCGA	RV	BLCA	TCGA-FD-A62P-01A	ATP6AP1	chrX	153657520	+	OPN1LW	chrX	153421769	+
intron-3UTR	ENST00000484908	ENST00000463296		TCGA	RV	BLCA	TCGA-FD-A62P-01A	ATP6AP1	chrX	153657520	+	OPN1LW	chrX	153421769	+
Frame-shit	ENST00000335221	ENST00000269346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000335221	ENST00000529107		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000335221	ENST00000534346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000335221	ENST00000441391		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000321892	ENST00000269346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000321892	ENST00000529107		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000321892	ENST00000534346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000321892	ENST00000441391		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000306378	ENST00000269346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000306378	ENST00000529107		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000306378	ENST00000534346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000306378	ENST00000441391		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000424123	ENST00000269346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000424123	ENST00000529107		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000424123	ENST00000534346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
5CDS-intron	ENST00000424123	ENST00000441391		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000577770	ENST00000269346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000577770	ENST00000529107		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
intron-intron	ENST00000577770	ENST00000534346		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
intron-intron	ENST00000577770	ENST00000441391		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72227027	+
Frame-shit	ENST00000430627	ENST00000315392		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000430627	ENST00000493200		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000430627	ENST00000539608		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000430627	ENST00000444911		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000430627	ENST00000394316		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
Frame-shit	ENST00000447079	ENST00000315392		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000447079	ENST00000493200		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000447079	ENST00000539608		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000447079	ENST00000444911		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000447079	ENST00000394316		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
intron-3CDS	ENST00000559545	ENST00000315392		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000559545	ENST00000493200		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000559545	ENST00000539608		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000559545	ENST00000444911		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000559545	ENST00000394316		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37265644	-
In-frame	ENST00000225719	ENST00000340635		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000225719	ENST00000360047		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000225719	ENST00000507116		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000225719	ENST00000502484		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000225719	ENST00000546160		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000225719	ENST00000502575		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000225719	ENST00000358923		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000225719	ENST00000503258		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000225719	ENST00000405755		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000225719	ENST00000317118		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000225719	ENST00000503947		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000543464	ENST00000340635		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000543464	ENST00000360047		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000543464	ENST00000507116		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000543464	ENST00000502484		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000543464	ENST00000546160		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
In-frame	ENST00000543464	ENST00000502575		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000543464	ENST00000358923		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000543464	ENST00000503258		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000543464	ENST00000405755		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000543464	ENST00000317118		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000543464	ENST00000503947		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000584051	ENST00000340635		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000584051	ENST00000360047		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000584051	ENST00000507116		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000584051	ENST00000502484		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000584051	ENST00000546160		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000584051	ENST00000502575		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-intron	ENST00000584051	ENST00000358923		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-intron	ENST00000584051	ENST00000503258		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-intron	ENST00000584051	ENST00000405755		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-intron	ENST00000584051	ENST00000317118		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
intron-intron	ENST00000584051	ENST00000503947		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	CPD	chr17	28770989	+	PDE4D	chr5	58511794	-
5UTR-3CDS	ENST00000269214	ENST00000352393		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000269214	ENST00000317677		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000269214	ENST00000397445		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000269214	ENST00000317619		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000269214	ENST00000397443		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000269214	ENST00000397446		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000269214	ENST00000397442		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-intron	ENST00000269214	ENST00000475146		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000352393		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000317677		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000397445		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000317619		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000397443		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000397446		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000580101	ENST00000397442		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5UTR-intron	ENST00000580101	ENST00000475146		TCGA	RV	BLCA	TCGA-G2-AA3B-01A	ESCO1	chr18	19180584	-	CPNE1	chr20	34220845	-
5CDS-5UTR	ENST00000396153	ENST00000483391		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000396153	ENST00000369740		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000396153	ENST00000343320		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000396153	ENST00000451398		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000396153	ENST00000353665		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000396153	ENST00000430615		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000371778	ENST00000483391		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000371778	ENST00000369740		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000371778	ENST00000343320		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000371778	ENST00000451398		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000371778	ENST00000353665		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5CDS-5UTR	ENST00000371778	ENST00000430615		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000545823	ENST00000483391		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000545823	ENST00000369740		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000545823	ENST00000343320		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000545823	ENST00000451398		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000545823	ENST00000353665		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000545823	ENST00000430615		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000472808	ENST00000483391		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000472808	ENST00000369740		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000472808	ENST00000343320		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000472808	ENST00000451398		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000472808	ENST00000353665		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
intron-5UTR	ENST00000472808	ENST00000430615		TCGA	RV	BLCA	TCGA-UY-A78N-01A	FAF1	chr1	51121114	-	CHIA	chr1	111857162	+
5UTR-3CDS	ENST00000356218	ENST00000394609		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000405240		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000357376		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000317610		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000357732		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000337526		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000394611		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000356218	ENST00000404909		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-intron	ENST00000356218	ENST00000486085		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-intron	ENST00000356218	ENST00000354474		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-intron	ENST00000356218	ENST00000402434		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000394609		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000405240		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000357376		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000317610		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000357732		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000337526		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000394611		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-3CDS	ENST00000557103	ENST00000404909		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-intron	ENST00000557103	ENST00000486085		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-intron	ENST00000557103	ENST00000354474		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
3UTR-intron	ENST00000557103	ENST00000402434		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000394609		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000405240		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000357376		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000317610		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000357732		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000337526		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000394611		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000395718	ENST00000404909		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000395718	ENST00000486085		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000395718	ENST00000354474		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000395718	ENST00000402434		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000394609		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000405240		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000357376		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000317610		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000357732		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000337526		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000394611		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000344768	ENST00000404909		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000344768	ENST00000486085		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000344768	ENST00000354474		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000344768	ENST00000402434		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000394609		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000405240		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000357376		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000317610		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000357732		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000337526		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000394611		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000554167	ENST00000404909		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000554167	ENST00000486085		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000554167	ENST00000354474		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000554167	ENST00000402434		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000394609		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000405240		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000357376		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000317610		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000357732		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000337526		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000394611		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-3CDS	ENST00000553556	ENST00000404909		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000553556	ENST00000486085		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000553556	ENST00000354474		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
intron-intron	ENST00000553556	ENST00000402434		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	FRMD6	chr14	52037128	+	RTN4	chr2	55214834	-
5UTR-3CDS	ENST00000299293	ENST00000331471		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000488961		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000330891		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000553096		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000476098		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000266661		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000551160		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000393365		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000533674		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-3CDS	ENST00000549921	ENST00000331471		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000488961		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000330891		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000553096		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000476098		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000266661		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000551160		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000393365		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000549921	ENST00000533674		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-3CDS	ENST00000550389	ENST00000331471		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000488961		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000330891		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000553096		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000476098		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000266661		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000551160		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000393365		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000533674		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-3CDS	ENST00000397997	ENST00000331471		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000488961		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000330891		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000553096		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000476098		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000266661		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000551160		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000393365		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000397997	ENST00000533674		TCGA	RV	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69925836	+	BEST3	chr12	70037567	-
5UTR-3CDS	ENST00000402384	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000402384	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000402384	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000402384	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000402384	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000402384	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000402384	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000406470	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000406470	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000406470	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000406470	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000406470	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000406470	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000406470	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000265577	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000265577	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000265577	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000265577	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000265577	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000265577	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000265577	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000396675	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000396675	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000396675	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000401396	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000401396	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000401396	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000422063	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000422063	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000422063	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000407906	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000407906	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000407906	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000407906	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000407906	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000407906	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000407906	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000222390		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000457544		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000444829		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000453411		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000476942	ENST00000423064		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000476942	ENST00000354224		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
intron-intron	ENST00000476942	ENST00000453018		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8301724	-	HGF	chr7	81374436	-
Frame-shit	ENST00000373030	ENST00000309212		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373030	ENST00000342753		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373030	ENST00000445648		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373030	ENST00000477278		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373039	ENST00000309212		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373039	ENST00000342753		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373039	ENST00000445648		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
Frame-shit	ENST00000373039	ENST00000477278		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
intron-3CDS	ENST00000471199	ENST00000309212		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
intron-3CDS	ENST00000471199	ENST00000342753		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
intron-3CDS	ENST00000471199	ENST00000445648		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
intron-3CDS	ENST00000471199	ENST00000477278		TCGA	RV	BLCA	TCGA-ZF-A9RL-01A	IFT52	chr20	42225162	+	MXRA8	chr1	1292084	-
5CDS-intron	ENST00000392903	ENST00000356951		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000392903	ENST00000298510		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000392903	ENST00000494433		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000260777	ENST00000356951		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000260777	ENST00000298510		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000260777	ENST00000494433		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000355371	ENST00000356951		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000355371	ENST00000298510		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
5CDS-intron	ENST00000355371	ENST00000494433		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
intron-intron	ENST00000392901	ENST00000356951		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
intron-intron	ENST00000392901	ENST00000298510		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
intron-intron	ENST00000392901	ENST00000494433		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
intron-intron	ENST00000497044	ENST00000356951		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
intron-intron	ENST00000497044	ENST00000298510		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
intron-intron	ENST00000497044	ENST00000494433		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	KIAA1598	chr10	118764533	-	PRDX3	chr10	120934104	-
Frame-shit	ENST00000293872	ENST00000273857		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000293872	ENST00000508498		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000293872	ENST00000502252		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000293872	ENST00000505909		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000293872	ENST00000504584		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
5CDS-intron	ENST00000293872	ENST00000515827		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000337351	ENST00000273857		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000337351	ENST00000508498		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000337351	ENST00000502252		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000337351	ENST00000505909		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000337351	ENST00000504584		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
5CDS-intron	ENST00000337351	ENST00000515827		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000397783	ENST00000273857		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000397783	ENST00000508498		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000397783	ENST00000502252		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000397783	ENST00000505909		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
Frame-shit	ENST00000397783	ENST00000504584		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
5CDS-intron	ENST00000397783	ENST00000515827		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
In-frame	ENST00000397780	ENST00000273857		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
In-frame	ENST00000397780	ENST00000508498		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
In-frame	ENST00000397780	ENST00000502252		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
In-frame	ENST00000397780	ENST00000505909		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
In-frame	ENST00000397780	ENST00000504584		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
5CDS-intron	ENST00000397780	ENST00000515827		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
intron-3CDS	ENST00000494366	ENST00000273857		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
intron-3CDS	ENST00000494366	ENST00000508498		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
intron-3CDS	ENST00000494366	ENST00000502252		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
intron-3CDS	ENST00000494366	ENST00000505909		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
intron-3CDS	ENST00000494366	ENST00000504584		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
intron-intron	ENST00000494366	ENST00000515827		TCGA	RV	BLCA	TCGA-K4-A83P-01A	LUC7L	chr16	249061	-	CORIN	chr4	47667280	-
In-frame	ENST00000178640	ENST00000342683		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
5CDS-3UTR	ENST00000178640	ENST00000560041		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
5CDS-3UTR	ENST00000178640	ENST00000557807		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
3UTR-3CDS	ENST00000560591	ENST00000342683		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
3UTR-3UTR	ENST00000560591	ENST00000560041		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
3UTR-3UTR	ENST00000560591	ENST00000557807		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
In-frame	ENST00000395476	ENST00000342683		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
5CDS-3UTR	ENST00000395476	ENST00000560041		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
5CDS-3UTR	ENST00000395476	ENST00000557807		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
In-frame	ENST00000354498	ENST00000342683		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
5CDS-3UTR	ENST00000354498	ENST00000560041		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
5CDS-3UTR	ENST00000354498	ENST00000557807		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
intron-3CDS	ENST00000340972	ENST00000342683		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
intron-3UTR	ENST00000340972	ENST00000560041		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
intron-3UTR	ENST00000340972	ENST00000557807		TCGA	RV	BLCA	TCGA-K4-A83P-01A	MAP2K5	chr15	67893087	+	C15orf61	chr15	67818756	+
Frame-shit	ENST00000404260	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000404260	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000404260	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
Frame-shit	ENST00000403625	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000403625	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000403625	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-3CDS	ENST00000406374	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000406374	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000406374	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-3CDS	ENST00000406039	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000406039	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000406039	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-3CDS	ENST00000478569	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000478569	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000478569	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-3CDS	ENST00000490016	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000490016	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000490016	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
Frame-shit	ENST00000403666	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000403666	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000403666	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
Frame-shit	ENST00000405643	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000405643	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000405643	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
Frame-shit	ENST00000261569	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000261569	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
5CDS-intron	ENST00000261569	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-3CDS	ENST00000407621	ENST00000231461		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000407621	ENST00000451528		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
intron-intron	ENST00000407621	ENST00000507360		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	MAST4	chr5	66429474	+	ST8SIA4	chr5	100192100	-
Frame-shit	ENST00000521689	ENST00000394752		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000521689	ENST00000394750		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000521689	ENST00000358080		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000521689	ENST00000296295		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
5CDS-intron	ENST00000521689	ENST00000470575		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000254898	ENST00000394752		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000254898	ENST00000394750		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000254898	ENST00000358080		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000254898	ENST00000296295		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
5CDS-intron	ENST00000254898	ENST00000470575		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000524308	ENST00000394752		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000524308	ENST00000394750		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000524308	ENST00000358080		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000524308	ENST00000296295		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
5CDS-intron	ENST00000524308	ENST00000470575		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000522025	ENST00000394752		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000522025	ENST00000394750		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000522025	ENST00000358080		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000522025	ENST00000296295		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-intron	ENST00000522025	ENST00000470575		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000520016	ENST00000394752		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000520016	ENST00000394750		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000520016	ENST00000358080		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000520016	ENST00000296295		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
5CDS-intron	ENST00000520016	ENST00000470575		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000518238	ENST00000394752		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000518238	ENST00000394750		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000518238	ENST00000358080		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-3CDS	ENST00000518238	ENST00000296295		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
intron-intron	ENST00000518238	ENST00000470575		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	MATN2	chr8	98900470	+	SFMBT1	chr3	52950230	-
Frame-shit	ENST00000274747	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
In-frame	ENST00000274747	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
intron-3CDS	ENST00000543597	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
intron-3CDS	ENST00000543597	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
Frame-shit	ENST00000535061	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
In-frame	ENST00000535061	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
3UTR-3CDS	ENST00000483634	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
3UTR-3CDS	ENST00000483634	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
Frame-shit	ENST00000378353	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
In-frame	ENST00000378353	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
Frame-shit	ENST00000378386	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
In-frame	ENST00000378386	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
Frame-shit	ENST00000443868	ENST00000378454		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
In-frame	ENST00000443868	ENST00000378450		TCGA	RV	BLCA	TCGA-DK-A6B1-01A	MRS2	chr6	24405469	+	DCDC2	chr6	24205330	-
Frame-shit	ENST00000356462	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000356462	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000356462	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000356462	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000356462	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000356462	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000400345	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000400345	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000400345	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000400345	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000400345	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000400345	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000589054	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000589054	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000589054	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000589054	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000589054	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000589054	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000256832	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000256832	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000256832	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000256832	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000256832	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000256832	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000382850	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000382850	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000382850	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000382850	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000382850	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000382850	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000256830	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000256830	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000256830	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000256830	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000256830	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000256830	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000588516	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000588516	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000588516	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000588516	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000588516	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000588516	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456986	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456986	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456986	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456986	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456986	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456986	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000435432	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000435432	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000435432	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000435432	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000435432	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000435432	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000357895	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000357895	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000357895	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000357895	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000357895	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000357895	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000586263	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000586263	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000586263	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000586263	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000586263	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000586263	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456173	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456173	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456173	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456173	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456173	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000456173	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000431212	ENST00000372425		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000431212	ENST00000583037		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000431212	ENST00000372434		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000431212	ENST00000372432		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000431212	ENST00000372426		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000431212	ENST00000486909		TCGA	RV	BLCA	TCGA-BT-A20R-01A	NEDD4L	chr18	55919286	+	HYI	chr1	43917990	-
Frame-shit	ENST00000380958	ENST00000400602		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
Frame-shit	ENST00000380958	ENST00000255305		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
5CDS-intron	ENST00000380958	ENST00000490513		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
Frame-shit	ENST00000399613	ENST00000400602		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
Frame-shit	ENST00000399613	ENST00000255305		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
5CDS-intron	ENST00000399613	ENST00000490513		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
intron-3CDS	ENST00000282391	ENST00000400602		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
intron-3CDS	ENST00000282391	ENST00000255305		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
intron-intron	ENST00000282391	ENST00000490513		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
intron-3CDS	ENST00000483842	ENST00000400602		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
intron-3CDS	ENST00000483842	ENST00000255305		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
intron-intron	ENST00000483842	ENST00000490513		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PAN3	chr13	28794515	+	XPO4	chr13	21358058	-
Frame-shit	ENST00000381125	ENST00000351293		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381125	ENST00000322635		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381125	ENST00000394762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381125	ENST00000423381		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381125	ENST00000322680		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381125	ENST00000305762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381125	ENST00000372765		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000381125	ENST00000472912		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000381125	ENST00000444854		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000351293		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000322635		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000394762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000423381		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000322680		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000305762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000381075	ENST00000372765		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000381075	ENST00000472912		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000381075	ENST00000444854		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000351293		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000322635		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000394762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000423381		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000322680		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000305762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000421751	ENST00000372765		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000421751	ENST00000472912		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000421751	ENST00000444854		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000351293		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000322635		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000394762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000423381		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000322680		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000305762		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000381072	ENST00000372765		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000381072	ENST00000472912		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000381072	ENST00000444854		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	PFKP	chr10	3159038	+	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000328257	ENST00000382303		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000328257	ENST00000489369		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000328257	ENST00000382297		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000328257	ENST00000382293		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000398427	ENST00000382303		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000398427	ENST00000489369		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000398427	ENST00000382297		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000398427	ENST00000382293		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
3UTR-5UTR	ENST00000542710	ENST00000382303		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
3UTR-3UTR	ENST00000542710	ENST00000489369		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
3UTR-5UTR	ENST00000542710	ENST00000382297		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
3UTR-intron	ENST00000542710	ENST00000382293		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000543525	ENST00000382303		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
intron-3UTR	ENST00000543525	ENST00000489369		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000543525	ENST00000382297		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
intron-intron	ENST00000543525	ENST00000382293		TCGA	RV	BLCA	TCGA-XF-AAML-01A	PPME1	chr11	73882567	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000532097	ENST00000529261		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-3UTR	ENST00000532097	ENST00000278353		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-intron	ENST00000532097	ENST00000395700		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-3UTR	ENST00000431206	ENST00000529261		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-3UTR	ENST00000431206	ENST00000278353		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-intron	ENST00000431206	ENST00000395700		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-3UTR	ENST00000352303	ENST00000529261		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-3UTR	ENST00000352303	ENST00000278353		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5CDS-intron	ENST00000352303	ENST00000395700		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
intron-3UTR	ENST00000532025	ENST00000529261		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
intron-3UTR	ENST00000532025	ENST00000278353		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
intron-intron	ENST00000532025	ENST00000395700		TCGA	RV	BLCA	TCGA-GC-A6I1-01A	PSMD13	chr11	237144	+	HSD17B12	chr11	43819870	+
5UTR-3CDS	ENST00000253363	ENST00000264808		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000253363	ENST00000428209		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000253363	ENST00000515109		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000253363	ENST00000506065		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000253363	ENST00000394435		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000361162	ENST00000264808		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000361162	ENST00000428209		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000361162	ENST00000515109		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000361162	ENST00000506065		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000361162	ENST00000394435		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000528062	ENST00000264808		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000528062	ENST00000428209		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000528062	ENST00000515109		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000528062	ENST00000506065		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000528062	ENST00000394435		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000407261	ENST00000264808		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000407261	ENST00000428209		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000407261	ENST00000515109		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000407261	ENST00000506065		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000407261	ENST00000394435		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000397370	ENST00000264808		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000397370	ENST00000428209		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000397370	ENST00000515109		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000397370	ENST00000506065		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000397370	ENST00000394435		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000463098	ENST00000264808		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000463098	ENST00000428209		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000463098	ENST00000515109		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000463098	ENST00000506065		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000463098	ENST00000394435		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	RBM39	chr20	34329863	-	PRDM5	chr4	121742500	-
In-frame	ENST00000370673	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370673	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370673	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370673	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370673	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370673	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370673	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370673	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370671	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370671	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370671	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370671	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370671	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370671	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370671	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370671	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000394834	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000394834	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000394834	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000394834	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000394834	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000394834	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000394834	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000394834	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370669	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370669	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370669	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370669	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370669	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370669	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370669	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370669	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370668	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370668	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370668	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370668	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370668	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370668	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370668	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370668	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370670	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370670	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370670	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370670	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370670	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
In-frame	ENST00000370670	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370670	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
5CDS-3UTR	ENST00000370670	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3CDS	ENST00000370667	ENST00000370689		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3CDS	ENST00000370667	ENST00000370685		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3CDS	ENST00000370667	ENST00000394838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3CDS	ENST00000370667	ENST00000370682		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3CDS	ENST00000370667	ENST00000394839		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3CDS	ENST00000370667	ENST00000370688		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3UTR	ENST00000370667	ENST00000470673		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
intron-3UTR	ENST00000370667	ENST00000370680		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SAMD13	chr1	84768970	+	PRKACB	chr1	84662299	+
Frame-shit	ENST00000367505	ENST00000381750		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000367505	ENST00000381730		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000367505	ENST00000381728		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000367505	ENST00000448872		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000367505	ENST00000381732		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000367505	ENST00000445485		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
Frame-shit	ENST00000367503	ENST00000381750		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000367503	ENST00000381730		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000367503	ENST00000381728		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000367503	ENST00000448872		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000367503	ENST00000381732		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000367503	ENST00000445485		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
Frame-shit	ENST00000438092	ENST00000381750		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000438092	ENST00000381730		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000438092	ENST00000381728		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000438092	ENST00000448872		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000438092	ENST00000381732		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000438092	ENST00000445485		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
Frame-shit	ENST00000275233	ENST00000381750		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000275233	ENST00000381730		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000275233	ENST00000381728		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000275233	ENST00000448872		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000275233	ENST00000381732		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
5CDS-intron	ENST00000275233	ENST00000445485		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	SHPRH	chr6	146273485	-	RCL1	chr9	4860125	+
In-frame	ENST00000378536	ENST00000400921		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SKI	chr1	2161174	+	PRKCZ	chr1	2087434	+
In-frame	ENST00000378536	ENST00000400920		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SKI	chr1	2161174	+	PRKCZ	chr1	2087434	+
5CDS-3UTR	ENST00000378536	ENST00000479263		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SKI	chr1	2161174	+	PRKCZ	chr1	2087434	+
intron-3CDS	ENST00000478223	ENST00000400921		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SKI	chr1	2161174	+	PRKCZ	chr1	2087434	+
intron-3CDS	ENST00000478223	ENST00000400920		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SKI	chr1	2161174	+	PRKCZ	chr1	2087434	+
intron-3UTR	ENST00000478223	ENST00000479263		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SKI	chr1	2161174	+	PRKCZ	chr1	2087434	+
Frame-shit	ENST00000428135	ENST00000223145		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
5CDS-3UTR	ENST00000428135	ENST00000474269		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
Frame-shit	ENST00000409389	ENST00000223145		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
5CDS-3UTR	ENST00000409389	ENST00000474269		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
Frame-shit	ENST00000409604	ENST00000223145		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
5CDS-3UTR	ENST00000409604	ENST00000474269		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
intron-3CDS	ENST00000496855	ENST00000223145		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
intron-3UTR	ENST00000496855	ENST00000474269		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	SNX13	chr7	17979907	-	GLCCI1	chr7	8043538	+
Frame-shit	ENST00000374232	ENST00000337530		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115407930	+
5CDS-intron	ENST00000374232	ENST00000374244		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115407930	+
5CDS-intron	ENST00000374232	ENST00000536272		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115407930	+
intron-3CDS	ENST00000604751	ENST00000337530		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115407930	+
intron-intron	ENST00000604751	ENST00000374244		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115407930	+
intron-intron	ENST00000604751	ENST00000536272		TCGA	RV	BLCA	TCGA-FD-A3B5-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115407930	+
Frame-shit	ENST00000376840	ENST00000324768		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	TBC1D8	chr2	101706716	-	CREG2	chr2	101971828	-
5CDS-intron	ENST00000376840	ENST00000495455		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	TBC1D8	chr2	101706716	-	CREG2	chr2	101971828	-
intron-3CDS	ENST00000409318	ENST00000324768		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	TBC1D8	chr2	101706716	-	CREG2	chr2	101971828	-
intron-intron	ENST00000409318	ENST00000495455		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	TBC1D8	chr2	101706716	-	CREG2	chr2	101971828	-
intron-3CDS	ENST00000462819	ENST00000324768		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	TBC1D8	chr2	101706716	-	CREG2	chr2	101971828	-
intron-intron	ENST00000462819	ENST00000495455		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	TBC1D8	chr2	101706716	-	CREG2	chr2	101971828	-
Frame-shit	ENST00000375370	ENST00000375441		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
Frame-shit	ENST00000375370	ENST00000451881		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
Frame-shit	ENST00000375370	ENST00000326335		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
Frame-shit	ENST00000375370	ENST00000375440		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
5CDS-3UTR	ENST00000375370	ENST00000463426		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000538138	ENST00000375441		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000538138	ENST00000451881		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000538138	ENST00000326335		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000538138	ENST00000375440		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3UTR	ENST00000538138	ENST00000463426		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
3UTR-3CDS	ENST00000465174	ENST00000375441		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
3UTR-3CDS	ENST00000465174	ENST00000451881		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
3UTR-3CDS	ENST00000465174	ENST00000326335		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
3UTR-3CDS	ENST00000465174	ENST00000375440		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
3UTR-3UTR	ENST00000465174	ENST00000463426		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000544902	ENST00000375441		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000544902	ENST00000451881		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000544902	ENST00000326335		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3CDS	ENST00000544902	ENST00000375440		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
intron-3UTR	ENST00000544902	ENST00000463426		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TFDP1	chr13	114286059	+	CUL4A	chr13	113883760	+
In-frame	ENST00000217515	ENST00000389484		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
5CDS-intron	ENST00000217515	ENST00000486364		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
intron-3CDS	ENST00000585497	ENST00000389484		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
intron-intron	ENST00000585497	ENST00000486364		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
Frame-shit	ENST00000590954	ENST00000389484		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
5CDS-intron	ENST00000590954	ENST00000486364		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
5UTR-3CDS	ENST00000540155	ENST00000389484		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
5UTR-intron	ENST00000540155	ENST00000486364		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	TXNL1	chr18	54305574	-	LRP1B	chr2	141299540	-
5CDS-5UTR	ENST00000351842	ENST00000310232		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
5CDS-5UTR	ENST00000351842	ENST00000435327		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
5CDS-5UTR	ENST00000265560	ENST00000310232		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
5CDS-5UTR	ENST00000265560	ENST00000435327		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
5UTR-5UTR	ENST00000488520	ENST00000310232		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
5UTR-5UTR	ENST00000488520	ENST00000435327		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
intron-5UTR	ENST00000416417	ENST00000310232		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
intron-5UTR	ENST00000416417	ENST00000435327		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
intron-5UTR	ENST00000415188	ENST00000310232		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
intron-5UTR	ENST00000415188	ENST00000435327		TCGA	RV	BLCA	TCGA-ZF-AA4N-01A	USP4	chr3	49348053	-	CCDC13	chr3	42799843	-
Frame-shit	ENST00000394233	ENST00000260526		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000394233	ENST00000482481		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000394233	ENST00000370217		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
Frame-shit	ENST00000454898	ENST00000260526		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000454898	ENST00000482481		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000454898	ENST00000370217		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5UTR-3CDS	ENST00000536817	ENST00000260526		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5UTR-intron	ENST00000536817	ENST00000482481		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5UTR-intron	ENST00000536817	ENST00000370217		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
Frame-shit	ENST00000370214	ENST00000260526		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000370214	ENST00000482481		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000370214	ENST00000370217		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
Frame-shit	ENST00000315713	ENST00000260526		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000315713	ENST00000482481		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
5CDS-intron	ENST00000315713	ENST00000370217		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
intron-3CDS	ENST00000484213	ENST00000260526		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
intron-intron	ENST00000484213	ENST00000482481		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
intron-intron	ENST00000484213	ENST00000370217		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ABCD3	chr1	94884144	+	ARHGAP29	chr1	94685948	-
Frame-shit	ENST00000353139	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000353139	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000353139	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
5CDS-intron	ENST00000353139	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000360679	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000360679	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000360679	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000360679	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000394406	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000394406	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000394406	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
5CDS-intron	ENST00000394406	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000335166	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000335166	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000335166	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000335166	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
In-frame	ENST00000416895	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
In-frame	ENST00000416895	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
In-frame	ENST00000416895	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
5CDS-intron	ENST00000416895	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000361253	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000361253	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000361253	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000361253	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000588142	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000588142	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000588142	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
5CDS-intron	ENST00000588142	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000589665	ENST00000487273		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000589665	ENST00000466936		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000589665	ENST00000481513		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000589665	ENST00000484143		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000353139	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
Frame-shit	ENST00000353139	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
Frame-shit	ENST00000353139	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
Frame-shit	ENST00000353139	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5CDS-intron	ENST00000353139	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000360679	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000360679	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000360679	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000360679	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-intron	ENST00000360679	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000394406	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000394406	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000394406	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000394406	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-intron	ENST00000394406	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000335166	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000335166	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000335166	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000335166	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-intron	ENST00000335166	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000416895	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000416895	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000416895	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000416895	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-intron	ENST00000416895	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000361253	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000361253	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000361253	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000361253	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-intron	ENST00000361253	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000588142	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000588142	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000588142	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-3CDS	ENST00000588142	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
intron-intron	ENST00000588142	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000589665	ENST00000394395		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000589665	ENST00000586023		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000589665	ENST00000225396		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-3CDS	ENST00000589665	ENST00000417170		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
5UTR-intron	ENST00000589665	ENST00000591992		TCGA	RV	BLCA	TCGA-DK-A2I2-01A	ACACA	chr17	35766352	-	TADA2A	chr17	35783609	+
In-frame	ENST00000345739	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000345739	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000345739	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
In-frame	ENST00000264110	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000264110	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000264110	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
In-frame	ENST00000409635	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000409635	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000409635	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-3CDS	ENST00000392543	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-intron	ENST00000392543	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-5UTR	ENST00000392543	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-3CDS	ENST00000409499	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-intron	ENST00000409499	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-5UTR	ENST00000409499	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
Frame-shit	ENST00000392544	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000392544	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000392544	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
Frame-shit	ENST00000426833	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000426833	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000426833	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
Frame-shit	ENST00000538946	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000538946	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000538946	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
Frame-shit	ENST00000487334	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000487334	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000487334	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-3CDS	ENST00000409833	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-intron	ENST00000409833	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-5UTR	ENST00000409833	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-3CDS	ENST00000413123	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-intron	ENST00000413123	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
intron-5UTR	ENST00000413123	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
Frame-shit	ENST00000409437	ENST00000216373		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-intron	ENST00000409437	ENST00000543680		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
5CDS-5UTR	ENST00000409437	ENST00000555794		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	ATF2	chr2	175976296	-	SOS2	chr14	50641270	-
In-frame	ENST00000381655	ENST00000443765		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
In-frame	ENST00000381655	ENST00000239891		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
In-frame	ENST00000381655	ENST00000413537		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
5CDS-5UTR	ENST00000381655	ENST00000496689		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
In-frame	ENST00000255283	ENST00000443765		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
In-frame	ENST00000255283	ENST00000239891		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
In-frame	ENST00000255283	ENST00000413537		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
5CDS-5UTR	ENST00000255283	ENST00000496689		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
3UTR-3CDS	ENST00000491840	ENST00000443765		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
3UTR-3CDS	ENST00000491840	ENST00000239891		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
3UTR-3CDS	ENST00000491840	ENST00000413537		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
3UTR-5UTR	ENST00000491840	ENST00000496689		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ATP8A2	chr13	26436546	+	ALG5	chr13	37559877	-
5CDS-intron	ENST00000318003	ENST00000470422		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-intron	ENST00000318003	ENST00000246043		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-5UTR	ENST00000318003	ENST00000377813		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-5UTR	ENST00000318003	ENST00000377807		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-intron	ENST00000318003	ENST00000360807		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-5UTR	ENST00000318003	ENST00000455029		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-intron	ENST00000589606	ENST00000470422		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-intron	ENST00000589606	ENST00000246043		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-5UTR	ENST00000589606	ENST00000377813		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-5UTR	ENST00000589606	ENST00000377807		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-intron	ENST00000589606	ENST00000360807		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
5CDS-5UTR	ENST00000589606	ENST00000455029		TCGA	RV	BLCA	TCGA-GU-A764-01A	CC2D1A	chr19	14034624	+	RRBP1	chr20	17660720	-
In-frame	ENST00000346329	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000346329	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000346329	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000346329	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
Frame-shit	ENST00000346329	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000346329	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
Frame-shit	ENST00000346329	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
5CDS-intron	ENST00000346329	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000301843	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000301843	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000301843	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000301843	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
Frame-shit	ENST00000301843	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000301843	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
Frame-shit	ENST00000301843	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
5CDS-intron	ENST00000301843	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-3CDS	ENST00000527622	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
3UTR-intron	ENST00000527622	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000376561	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000376561	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000376561	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000376561	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
Frame-shit	ENST00000376561	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000376561	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
Frame-shit	ENST00000376561	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
5CDS-intron	ENST00000376561	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-3CDS	ENST00000538675	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
intron-intron	ENST00000538675	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	CTTN	chr11	70256066	+	SHANK2	chr11	70336492	-
In-frame	ENST00000531863	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000531863	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000531863	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000531863	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000532677	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000532677	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000532677	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000532677	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000453114	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000453114	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000453114	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000453114	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000360510	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000360510	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000360510	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000360510	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000541961	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000541961	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000541961	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000541961	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000530165	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
In-frame	ENST00000530165	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000530165	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5CDS-5UTR	ENST00000530165	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
3UTR-3CDS	ENST00000533799	ENST00000371847		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
3UTR-3CDS	ENST00000533799	ENST00000371843		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
3UTR-5UTR	ENST00000533799	ENST00000396199		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
3UTR-5UTR	ENST00000533799	ENST00000463938		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DPP3	chr11	66261104	+	SPATA6	chr1	48918803	-
5UTR-3CDS	ENST00000202028	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000202028	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000202028	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-5UTR	ENST00000202028	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000373950	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000373950	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000373950	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-5UTR	ENST00000373950	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000441639	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000441639	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000441639	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
5UTR-5UTR	ENST00000441639	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373946	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373946	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373946	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000373946	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000338074	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000338074	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000338074	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000338074	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373941	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373941	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373941	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000373941	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000479336	ENST00000311637		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000479336	ENST00000338821		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000479336	ENST00000402822		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000479336	ENST00000477492		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34700402	+	ATP9A	chr20	50346517	-
In-frame	ENST00000521166	ENST00000262219		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAM91A1	chr8	124787538	+	ANXA13	chr8	124724993	-
In-frame	ENST00000521166	ENST00000419625		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAM91A1	chr8	124787538	+	ANXA13	chr8	124724993	-
5CDS-intron	ENST00000521166	ENST00000519045		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAM91A1	chr8	124787538	+	ANXA13	chr8	124724993	-
In-frame	ENST00000334705	ENST00000262219		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAM91A1	chr8	124787538	+	ANXA13	chr8	124724993	-
In-frame	ENST00000334705	ENST00000419625		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAM91A1	chr8	124787538	+	ANXA13	chr8	124724993	-
5CDS-intron	ENST00000334705	ENST00000519045		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAM91A1	chr8	124787538	+	ANXA13	chr8	124724993	-
5CDS-intron	ENST00000314167	ENST00000290902		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5CDS-intron	ENST00000314167	ENST00000431380		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5CDS-intron	ENST00000314167	ENST00000400762		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5CDS-intron	ENST00000511163	ENST00000290902		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5CDS-intron	ENST00000511163	ENST00000431380		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5CDS-intron	ENST00000511163	ENST00000400762		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5UTR-intron	ENST00000509566	ENST00000290902		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5UTR-intron	ENST00000509566	ENST00000431380		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
5UTR-intron	ENST00000509566	ENST00000400762		TCGA	RV	BLCA	TCGA-FD-A6TE-01A	GAK	chr4	853394	-	SPON2	chr4	1173329	-
intron-3CDS	ENST00000566442	ENST00000335670		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000566442	ENST00000309157		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000566442	ENST00000261523		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000566442	ENST00000449337		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-intron	ENST00000566442	ENST00000560004		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
Frame-shit	ENST00000318010	ENST00000335670		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
Frame-shit	ENST00000318010	ENST00000309157		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
Frame-shit	ENST00000318010	ENST00000261523		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
In-frame	ENST00000318010	ENST00000449337		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
5CDS-intron	ENST00000318010	ENST00000560004		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000440615	ENST00000335670		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000440615	ENST00000309157		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000440615	ENST00000261523		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-3CDS	ENST00000440615	ENST00000449337		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
intron-intron	ENST00000440615	ENST00000560004		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	GANC	chr15	42618622	+	RORA	chr15	60789818	-
5CDS-5UTR	ENST00000380191	ENST00000301215		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	GDI2	chr10	5855177	-	ZNF526	chr19	42728367	+
intron-5UTR	ENST00000479928	ENST00000301215		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	GDI2	chr10	5855177	-	ZNF526	chr19	42728367	+
5UTR-5UTR	ENST00000380132	ENST00000301215		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	GDI2	chr10	5855177	-	ZNF526	chr19	42728367	+
5CDS-5UTR	ENST00000380181	ENST00000301215		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	GDI2	chr10	5855177	-	ZNF526	chr19	42728367	+
Frame-shit	ENST00000366647	ENST00000444294		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
Frame-shit	ENST00000366647	ENST00000366652		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
Frame-shit	ENST00000366647	ENST00000449018		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
Frame-shit	ENST00000366647	ENST00000366653		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000366646	ENST00000444294		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000366646	ENST00000366652		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000366646	ENST00000449018		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000366646	ENST00000366653		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000469332	ENST00000444294		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000469332	ENST00000366652		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000469332	ENST00000449018		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
intron-3CDS	ENST00000469332	ENST00000366653		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	GNPAT	chr1	231386889	+	TRIM67	chr1	231344693	+
5UTR-3CDS	ENST00000434000	ENST00000333461		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	GPATCH8	chr17	42541840	-	STAC2	chr17	37374426	-
Frame-shit	ENST00000591680	ENST00000333461		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	GPATCH8	chr17	42541840	-	STAC2	chr17	37374426	-
intron-3CDS	ENST00000586265	ENST00000333461		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	GPATCH8	chr17	42541840	-	STAC2	chr17	37374426	-
intron-3CDS	ENST00000592154	ENST00000333461		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	GPATCH8	chr17	42541840	-	STAC2	chr17	37374426	-
intron-3CDS	ENST00000588554	ENST00000333461		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	GPATCH8	chr17	42541840	-	STAC2	chr17	37374426	-
In-frame	ENST00000371253	ENST00000296861		TCGA	RV	BLCA	TCGA-FD-A62P-01A	GPR110	chr6	46984353	-	TNFRSF21	chr6	47221257	-
5UTR-3CDS	ENST00000449332	ENST00000296861		TCGA	RV	BLCA	TCGA-FD-A62P-01A	GPR110	chr6	46984353	-	TNFRSF21	chr6	47221257	-
In-frame	ENST00000283297	ENST00000296861		TCGA	RV	BLCA	TCGA-FD-A62P-01A	GPR110	chr6	46984353	-	TNFRSF21	chr6	47221257	-
intron-3CDS	ENST00000371243	ENST00000296861		TCGA	RV	BLCA	TCGA-FD-A62P-01A	GPR110	chr6	46984353	-	TNFRSF21	chr6	47221257	-
5CDS-3UTR	ENST00000377403	ENST00000476083		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000377403	ENST00000480186		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000377403	ENST00000377443		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000377403	ENST00000377436		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000377403	ENST00000377442		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-3UTR	ENST00000602477	ENST00000476083		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000602477	ENST00000480186		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000602477	ENST00000377443		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000602477	ENST00000377436		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000602477	ENST00000377442		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
intron-3UTR	ENST00000495451	ENST00000476083		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
intron-intron	ENST00000495451	ENST00000480186		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
intron-intron	ENST00000495451	ENST00000377443		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
intron-intron	ENST00000495451	ENST00000377436		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
intron-intron	ENST00000495451	ENST00000377442		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	H6PD	chr1	9307142	+	CA6	chr1	9027718	+
Frame-shit	ENST00000341776	ENST00000274695		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
Frame-shit	ENST00000341776	ENST00000378624		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
Frame-shit	ENST00000341776	ENST00000378610		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000341776	ENST00000476517		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
5UTR-3CDS	ENST00000397311	ENST00000274695		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
5UTR-3CDS	ENST00000397311	ENST00000378624		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
5UTR-3CDS	ENST00000397311	ENST00000378610		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
5UTR-intron	ENST00000397311	ENST00000476517		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
Frame-shit	ENST00000541660	ENST00000274695		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
Frame-shit	ENST00000541660	ENST00000378624		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
Frame-shit	ENST00000541660	ENST00000378610		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000541660	ENST00000476517		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000474854	ENST00000274695		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000474854	ENST00000378624		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000474854	ENST00000378610		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
intron-intron	ENST00000474854	ENST00000476517		TCGA	RV	BLCA	TCGA-KQ-A41R-01A	JARID2	chr6	15410596	+	CDKAL1	chr6	20649524	+
Frame-shit	ENST00000377967	ENST00000262648		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
5CDS-intron	ENST00000377967	ENST00000481896		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
Frame-shit	ENST00000382899	ENST00000262648		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
5CDS-intron	ENST00000382899	ENST00000481896		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
Frame-shit	ENST00000536777	ENST00000262648		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
5CDS-intron	ENST00000536777	ENST00000481896		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
Frame-shit	ENST00000543216	ENST00000262648		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
5CDS-intron	ENST00000543216	ENST00000481896		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
intron-3CDS	ENST00000479423	ENST00000262648		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
intron-intron	ENST00000479423	ENST00000481896		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	KDM6A	chrX	44945224	+	KAL1	chrX	8591711	-
5CDS-5UTR	ENST00000297591	ENST00000297769		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000297591	ENST00000297770		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000297591	ENST00000518549		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000437199	ENST00000297769		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000437199	ENST00000297770		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000437199	ENST00000518549		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000421249	ENST00000297769		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000421249	ENST00000297770		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000421249	ENST00000518549		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
intron-5UTR	ENST00000523405	ENST00000297769		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
intron-5UTR	ENST00000523405	ENST00000297770		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
intron-5UTR	ENST00000523405	ENST00000518549		TCGA	RV	BLCA	TCGA-BT-A2LD-01A	KIAA1429	chr8	95565613	-	CPA6	chr8	68536486	-
intron-intron	ENST00000395309	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395309	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395309	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000413890	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000413890	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000413890	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000438792	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000438792	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000438792	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000395314	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000395314	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000395314	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395308	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395308	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395308	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000395311	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000395311	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000395311	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000416613	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000416613	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000416613	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554507	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554507	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554507	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555573	ENST00000360359		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555573	ENST00000535627		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555573	ENST00000470698		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	KTN1	chr14	56151301	+	ANKS1A	chr6	34977682	+
In-frame	ENST00000549982	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
Frame-shit	ENST00000549982	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000549982	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
In-frame	ENST00000361630	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
Frame-shit	ENST00000361630	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000361630	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
In-frame	ENST00000552217	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
Frame-shit	ENST00000552217	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000552217	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
In-frame	ENST00000393128	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
Frame-shit	ENST00000393128	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000393128	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
In-frame	ENST00000547098	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
Frame-shit	ENST00000547098	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000547098	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
In-frame	ENST00000548545	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
Frame-shit	ENST00000548545	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000548545	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
intron-3CDS	ENST00000552938	ENST00000228347		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
intron-3CDS	ENST00000552938	ENST00000539066		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
intron-intron	ENST00000552938	ENST00000549195		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	MRPL42	chr12	93881436	+	POLR3B	chr12	106903198	+
5CDS-intron	ENST00000416426	ENST00000581865		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000416426	ENST00000312655		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000416426	ENST00000585166		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-intron	ENST00000284073	ENST00000581865		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000284073	ENST00000312655		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000284073	ENST00000585166		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-intron	ENST00000322684	ENST00000581865		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000322684	ENST00000312655		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000322684	ENST00000585166		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-intron	ENST00000442934	ENST00000581865		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-5UTR	ENST00000442934	ENST00000312655		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-5UTR	ENST00000442934	ENST00000585166		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-intron	ENST00000579180	ENST00000581865		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-5UTR	ENST00000579180	ENST00000312655		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-5UTR	ENST00000579180	ENST00000585166		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-intron	ENST00000579505	ENST00000581865		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-5UTR	ENST00000579505	ENST00000312655		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
intron-5UTR	ENST00000579505	ENST00000585166		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	MSI2	chr17	55339553	+	YPEL2	chr17	57430576	+
5UTR-3CDS	ENST00000356056	ENST00000569547		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000356056	ENST00000395258		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000356056	ENST00000287202		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000356056	ENST00000539635		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000356056	ENST00000543764		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000356056	ENST00000567083		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000356056	ENST00000569311		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000444904	ENST00000569547		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000444904	ENST00000395258		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000444904	ENST00000287202		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000444904	ENST00000539635		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000444904	ENST00000543764		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000444904	ENST00000567083		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000444904	ENST00000569311		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000424560	ENST00000569547		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000424560	ENST00000395258		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000424560	ENST00000287202		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000424560	ENST00000539635		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000424560	ENST00000543764		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000424560	ENST00000567083		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000424560	ENST00000569311		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000564571	ENST00000569547		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000564571	ENST00000395258		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000564571	ENST00000287202		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000564571	ENST00000539635		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000564571	ENST00000543764		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000564571	ENST00000567083		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000564571	ENST00000569311		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000566885	ENST00000569547		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000566885	ENST00000395258		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000566885	ENST00000287202		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000566885	ENST00000539635		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000566885	ENST00000543764		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000566885	ENST00000567083		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000566885	ENST00000569311		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000563542	ENST00000569547		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000563542	ENST00000395258		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000563542	ENST00000287202		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000563542	ENST00000539635		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000563542	ENST00000543764		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000563542	ENST00000567083		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000563542	ENST00000569311		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	MYO9A	chr15	72410021	-	CELF6	chr15	72582596	-
Frame-shit	ENST00000530878	ENST00000294818		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	NOS1AP	chr1	162124266	+	LRRC52	chr1	165532742	+
Frame-shit	ENST00000361897	ENST00000294818		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	NOS1AP	chr1	162124266	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000493151	ENST00000294818		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	NOS1AP	chr1	162124266	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000454693	ENST00000294818		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	NOS1AP	chr1	162124266	+	LRRC52	chr1	165532742	+
Frame-shit	ENST00000324932	ENST00000254579		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000324932	ENST00000527990		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000324932	ENST00000354685		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000324932	ENST00000477562		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000359171	ENST00000254579		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000359171	ENST00000527990		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000359171	ENST00000354685		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000359171	ENST00000477562		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000355260	ENST00000254579		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000355260	ENST00000527990		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000355260	ENST00000354685		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000355260	ENST00000477562		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000397004	ENST00000254579		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000397004	ENST00000527990		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000397004	ENST00000354685		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000397004	ENST00000477562		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000397007	ENST00000254579		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000397007	ENST00000527990		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000397007	ENST00000354685		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
5CDS-intron	ENST00000397007	ENST00000477562		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
intron-3CDS	ENST00000488828	ENST00000254579		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
intron-3CDS	ENST00000488828	ENST00000527990		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
intron-intron	ENST00000488828	ENST00000354685		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
intron-intron	ENST00000488828	ENST00000477562		TCGA	RV	BLCA	TCGA-FD-A43N-01A	NUP98	chr11	3774546	-	DNHD1	chr11	6584212	+
Frame-shit	ENST00000278780	ENST00000064571		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	OVOL2	chr20	18022178	-	CBLN4	chr20	54575903	-
5UTR-3CDS	ENST00000483661	ENST00000064571		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	OVOL2	chr20	18022178	-	CBLN4	chr20	54575903	-
intron-intron	ENST00000331483	ENST00000371754		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000331483	ENST00000469991		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000331483	ENST00000371752		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000331483	ENST00000396105		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000576390	ENST00000371754		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000576390	ENST00000469991		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000576390	ENST00000371752		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000576390	ENST00000396105		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000439918	ENST00000371754		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000439918	ENST00000469991		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000439918	ENST00000371752		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000439918	ENST00000396105		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000472244	ENST00000371754		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000472244	ENST00000469991		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000472244	ENST00000371752		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000472244	ENST00000396105		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	P4HB	chr17	79801042	-	ZNFX1	chr20	47863418	-
5CDS-5UTR	ENST00000531066	ENST00000254436		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000531066	ENST00000543625		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000355661	ENST00000254436		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000355661	ENST00000543625		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000448080	ENST00000254436		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000448080	ENST00000543625		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000532079	ENST00000254436		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000532079	ENST00000543625		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000332954	ENST00000254436		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000332954	ENST00000543625		TCGA	RV	BLCA	TCGA-FD-A43N-01A	PLEKHA7	chr11	17035536	-	TRIM21	chr11	4411688	-
5CDS-intron	ENST00000328257	ENST00000496746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-intron	ENST00000328257	ENST00000526497		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-5UTR	ENST00000328257	ENST00000471387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-5UTR	ENST00000328257	ENST00000359461		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-5UTR	ENST00000328257	ENST00000376901		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-intron	ENST00000398427	ENST00000496746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-intron	ENST00000398427	ENST00000526497		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-5UTR	ENST00000398427	ENST00000471387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-5UTR	ENST00000398427	ENST00000359461		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5CDS-5UTR	ENST00000398427	ENST00000376901		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
3UTR-intron	ENST00000542710	ENST00000496746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
3UTR-intron	ENST00000542710	ENST00000526497		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
3UTR-5UTR	ENST00000542710	ENST00000471387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
3UTR-5UTR	ENST00000542710	ENST00000359461		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
3UTR-5UTR	ENST00000542710	ENST00000376901		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
intron-intron	ENST00000543525	ENST00000496746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
intron-intron	ENST00000543525	ENST00000526497		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
intron-5UTR	ENST00000543525	ENST00000471387		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
intron-5UTR	ENST00000543525	ENST00000359461		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
intron-5UTR	ENST00000543525	ENST00000376901		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PPME1	chr11	73915490	+	YIF1A	chr11	66055147	-
5UTR-3CDS	ENST00000376511	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-3CDS	ENST00000376511	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000376511	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-3CDS	ENST00000484449	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-3CDS	ENST00000484449	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5UTR-intron	ENST00000484449	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000420949	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000420949	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000420949	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000549281	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000549281	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549281	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000468706	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000468706	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000468706	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000449113	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000449113	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000449113	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000547333	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000547333	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000547333	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000475926	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000475926	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000475926	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000426299	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000426299	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000426299	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000551493	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000551493	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000551493	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000494003	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000494003	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000494003	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000383586	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000383586	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000383586	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000548899	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000548899	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000548899	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000478528	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000478528	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000478528	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000424446	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000424446	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000424446	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000552146	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000552146	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000552146	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000488513	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000488513	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000488513	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000429597	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000429597	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000429597	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000549865	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000549865	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000549865	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000482076	ENST00000376389		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-3CDS	ENST00000482076	ENST00000456573		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000470643		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000420604		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000436822		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000492441		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000383382		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000460694		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000553223		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000470163		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000383562		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000496175		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000490802		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000430843		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000444632		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
intron-intron	ENST00000482076	ENST00000466680		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	PPP1R10	chr6	30584255	-	FLOT1	chr6	30698877	-
5CDS-3UTR	ENST00000522684	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000522684	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000522684	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000522684	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000522684	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000522684	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000535192	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000535192	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000535192	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000535192	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000535192	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000535192	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000519465	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000519465	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000519465	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000519465	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000519465	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000519465	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000517887	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000517887	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000517887	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000517887	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000517887	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000517887	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000521059	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000521059	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000521059	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000521059	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000521059	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000521059	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000395218	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000395218	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000395218	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000395218	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000395218	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000395218	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000538769	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000538769	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000538769	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000538769	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000538769	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000538769	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000340930	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000340930	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000340930	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000340930	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000340930	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000340930	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000519419	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000519419	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000519419	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000519419	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000519419	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000519419	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000430260	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000430260	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000430260	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000430260	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000430260	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000430260	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000519881	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000519881	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000519881	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000519881	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000519881	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000519881	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000520892	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000520892	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000520892	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000520892	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000520892	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000520892	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000519635	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000519635	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000519635	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000519635	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000519635	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000519635	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000517712	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000517712	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000517712	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000517712	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000517712	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000517712	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000522950	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000522950	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-3UTR	ENST00000522950	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000522950	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000522950	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
intron-intron	ENST00000522950	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000520151	ENST00000395996		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000520151	ENST00000358544		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-3UTR	ENST00000520151	ENST00000357162		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000520151	ENST00000355155		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000520151	ENST00000441350		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-intron	ENST00000520151	ENST00000521932		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	PTK2	chr8	141753329	-	VPS13B	chr8	100673582	+
5CDS-5UTR	ENST00000368226	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368226	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368227	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368227	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000532331	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000532331	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368213	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368213	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368210	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368210	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368215	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368215	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368207	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000368207	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5UTR-5UTR	ENST00000524481	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5UTR-5UTR	ENST00000524481	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000525459	ENST00000254765		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000525459	ENST00000474760		TCGA	RV	BLCA	TCGA-ZF-A9RN-01A	PTPRK	chr6	128718711	-	POPDC3	chr6	105610035	-
Frame-shit	ENST00000368226	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368226	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368226	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368226	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368226	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368226	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368226	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368227	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368227	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368227	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368227	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368227	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368227	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368227	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000532331	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000532331	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000532331	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000532331	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000532331	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000532331	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000532331	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368213	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368213	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368213	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368213	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368213	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368213	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368213	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368210	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368210	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368210	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368210	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368210	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368210	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368210	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368215	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368215	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368215	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368215	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368215	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368215	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368215	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368207	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368207	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368207	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368207	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000368207	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368207	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000368207	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-3CDS	ENST00000524481	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-3CDS	ENST00000524481	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-3CDS	ENST00000524481	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-3CDS	ENST00000524481	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-3CDS	ENST00000524481	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-5UTR	ENST00000524481	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-5UTR	ENST00000524481	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000525459	ENST00000368134		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000525459	ENST00000457563		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000525459	ENST00000439090		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000525459	ENST00000437477		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
Frame-shit	ENST00000525459	ENST00000532763		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000525459	ENST00000533296		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5CDS-5UTR	ENST00000525459	ENST00000324172		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	PTPRK	chr6	128718711	-	SAMD3	chr6	130505768	-
5UTR-3CDS	ENST00000533486	ENST00000531863		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000533486	ENST00000532677		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000533486	ENST00000453114		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000533486	ENST00000360510		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000533486	ENST00000541961		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000533486	ENST00000530165		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-intron	ENST00000533486	ENST00000533799		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000534141	ENST00000531863		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000534141	ENST00000532677		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000534141	ENST00000453114		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000534141	ENST00000360510		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000534141	ENST00000541961		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000534141	ENST00000530165		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-intron	ENST00000534141	ENST00000533799		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000260056	ENST00000531863		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000260056	ENST00000532677		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000260056	ENST00000453114		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000260056	ENST00000360510		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000260056	ENST00000541961		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000260056	ENST00000530165		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-intron	ENST00000260056	ENST00000533799		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000527633	ENST00000531863		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000527633	ENST00000532677		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000527633	ENST00000453114		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000527633	ENST00000360510		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000527633	ENST00000541961		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000527633	ENST00000530165		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-intron	ENST00000527633	ENST00000533799		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000525117	ENST00000531863		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000525117	ENST00000532677		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000525117	ENST00000453114		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000525117	ENST00000360510		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000525117	ENST00000541961		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000525117	ENST00000530165		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-intron	ENST00000525117	ENST00000533799		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000532548	ENST00000531863		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000532548	ENST00000532677		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000532548	ENST00000453114		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000532548	ENST00000360510		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000532548	ENST00000541961		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-3CDS	ENST00000532548	ENST00000530165		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
intron-intron	ENST00000532548	ENST00000533799		TCGA	RV	BLCA	TCGA-FD-A62S-01A	RAB30	chr11	82782733	-	DPP3	chr11	66272083	+
5UTR-3CDS	ENST00000251849	ENST00000273221		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
5UTR-5UTR	ENST00000251849	ENST00000473088		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
5UTR-3CDS	ENST00000442415	ENST00000273221		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
5UTR-5UTR	ENST00000442415	ENST00000473088		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000534997	ENST00000273221		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000534997	ENST00000473088		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
5UTR-3CDS	ENST00000542177	ENST00000273221		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
5UTR-5UTR	ENST00000542177	ENST00000473088		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	RAF1	chr3	12705312	-	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000267163	ENST00000298125		TCGA	RV	BLCA	TCGA-HQ-A5NE-01A	RB1	chr13	48881542	+	WDFY2	chr13	52325446	+
5CDS-3UTR	ENST00000267163	ENST00000460145		TCGA	RV	BLCA	TCGA-HQ-A5NE-01A	RB1	chr13	48881542	+	WDFY2	chr13	52325446	+
intron-3CDS	ENST00000484879	ENST00000298125		TCGA	RV	BLCA	TCGA-HQ-A5NE-01A	RB1	chr13	48881542	+	WDFY2	chr13	52325446	+
intron-3UTR	ENST00000484879	ENST00000460145		TCGA	RV	BLCA	TCGA-HQ-A5NE-01A	RB1	chr13	48881542	+	WDFY2	chr13	52325446	+
5CDS-3UTR	ENST00000584667	ENST00000578382		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	SAP30BP	chr17	73667943	+	MYO15B	chr17	73615761	+
5CDS-intron	ENST00000584667	ENST00000583560		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	SAP30BP	chr17	73667943	+	MYO15B	chr17	73615761	+
intron-3UTR	ENST00000355423	ENST00000578382		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	SAP30BP	chr17	73667943	+	MYO15B	chr17	73615761	+
intron-intron	ENST00000355423	ENST00000583560		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	SAP30BP	chr17	73667943	+	MYO15B	chr17	73615761	+
3UTR-3UTR	ENST00000579864	ENST00000578382		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	SAP30BP	chr17	73667943	+	MYO15B	chr17	73615761	+
3UTR-intron	ENST00000579864	ENST00000583560		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	SAP30BP	chr17	73667943	+	MYO15B	chr17	73615761	+
5CDS-intron	ENST00000302516	ENST00000563392		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-3UTR	ENST00000302516	ENST00000570055		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-3UTR	ENST00000302516	ENST00000563206		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-3UTR	ENST00000302516	ENST00000451014		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000568625		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000288071		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000393657		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000355992		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
In-frame	ENST00000344921	ENST00000261531		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000344921	ENST00000554775		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000344921	ENST00000555761		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000263121	ENST00000261531		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000263121	ENST00000554775		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000263121	ENST00000555761		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000407422	ENST00000261531		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000407422	ENST00000554775		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000407422	ENST00000555761		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000407082	ENST00000261531		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000407082	ENST00000554775		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
In-frame	ENST00000407082	ENST00000555761		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
intron-3CDS	ENST00000477836	ENST00000261531		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
intron-3CDS	ENST00000477836	ENST00000554775		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
intron-3CDS	ENST00000477836	ENST00000555761		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	SMARCB1	chr22	24129449	+	SNW1	chr14	78201355	-
intron-3CDS	ENST00000585748	ENST00000590083		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	STK11	chr19	1207202	+	C19orf26	chr19	1231274	-
intron-3CDS	ENST00000585748	ENST00000382477		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	STK11	chr19	1207202	+	C19orf26	chr19	1231274	-
intron-3CDS	ENST00000585748	ENST00000215376		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	STK11	chr19	1207202	+	C19orf26	chr19	1231274	-
In-frame	ENST00000326873	ENST00000590083		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	STK11	chr19	1207202	+	C19orf26	chr19	1231274	-
Frame-shit	ENST00000326873	ENST00000382477		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	STK11	chr19	1207202	+	C19orf26	chr19	1231274	-
In-frame	ENST00000326873	ENST00000215376		TCGA	RV	BLCA	TCGA-DK-AA6R-01A	STK11	chr19	1207202	+	C19orf26	chr19	1231274	-
Frame-shit	ENST00000397517	ENST00000376503		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
Frame-shit	ENST00000539966	ENST00000376503		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
intron-3CDS	ENST00000481288	ENST00000376503		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
intron-3CDS	ENST00000376547	ENST00000376503		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
Frame-shit	ENST00000405303	ENST00000515064		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
Frame-shit	ENST00000405303	ENST00000441778		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
Frame-shit	ENST00000405303	ENST00000304523		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
Frame-shit	ENST00000405303	ENST00000502640		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5CDS-5UTR	ENST00000405303	ENST00000503178		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5CDS-5UTR	ENST00000405303	ENST00000503829		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5UTR-3CDS	ENST00000399920	ENST00000515064		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5UTR-3CDS	ENST00000399920	ENST00000441778		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5UTR-3CDS	ENST00000399920	ENST00000304523		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5UTR-3CDS	ENST00000399920	ENST00000502640		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5UTR-5UTR	ENST00000399920	ENST00000503178		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
5UTR-5UTR	ENST00000399920	ENST00000503829		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000304584	ENST00000515064		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000304584	ENST00000441778		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000304584	ENST00000304523		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000304584	ENST00000502640		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-5UTR	ENST00000304584	ENST00000503178		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-5UTR	ENST00000304584	ENST00000503829		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000508888	ENST00000515064		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000508888	ENST00000441778		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000508888	ENST00000304523		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-3CDS	ENST00000508888	ENST00000502640		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-5UTR	ENST00000508888	ENST00000503178		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
intron-5UTR	ENST00000508888	ENST00000503829		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	TAPT1	chr4	16227882	-	LDB2	chr4	16597498	-
In-frame	ENST00000357242	ENST00000324342		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000357242	ENST00000255499		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000310452	ENST00000324342		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000310452	ENST00000255499		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000481617	ENST00000324342		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000481617	ENST00000255499		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000276175	ENST00000324342		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
In-frame	ENST00000276175	ENST00000255499		TCGA	RV	BLCA	TCGA-C4-A0F6-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106038810	+
5UTR-3CDS	ENST00000301923	ENST00000333407		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
5UTR-intron	ENST00000301923	ENST00000488874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
5UTR-5UTR	ENST00000301923	ENST00000473717		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000402203	ENST00000333407		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000402203	ENST00000488874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000402203	ENST00000473717		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000454349	ENST00000333407		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000454349	ENST00000488874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000454349	ENST00000473717		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000335727	ENST00000333407		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000335727	ENST00000488874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000335727	ENST00000473717		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000497559	ENST00000333407		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000497559	ENST00000488874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000497559	ENST00000473717		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
Frame-shit	ENST00000405636	ENST00000402685		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000405636	ENST00000539469		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000405636	ENST00000298919		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000252487	ENST00000402685		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000252487	ENST00000539469		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000252487	ENST00000298919		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000592434	ENST00000402685		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000592434	ENST00000539469		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000592434	ENST00000298919		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000426677	ENST00000402685		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000426677	ENST00000539469		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000426677	ENST00000298919		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TOMM40	chr19	45397323	+	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000435706	ENST00000428257		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000435706	ENST00000280700		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000435706	ENST00000396649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000435706	ENST00000417874		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000435706	ENST00000467224		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
5CDS-3UTR	ENST00000435706	ENST00000422724		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000264331	ENST00000428257		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000264331	ENST00000280700		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000264331	ENST00000396649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000264331	ENST00000417874		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000264331	ENST00000467224		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
5CDS-3UTR	ENST00000264331	ENST00000422724		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000542520	ENST00000428257		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000542520	ENST00000280700		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000542520	ENST00000396649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000542520	ENST00000417874		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000542520	ENST00000467224		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3UTR	ENST00000542520	ENST00000422724		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000540199	ENST00000428257		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000540199	ENST00000280700		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000540199	ENST00000396649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000540199	ENST00000417874		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000540199	ENST00000467224		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3UTR	ENST00000540199	ENST00000422724		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000475717	ENST00000428257		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000475717	ENST00000280700		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000475717	ENST00000396649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000475717	ENST00000417874		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3CDS	ENST00000475717	ENST00000467224		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
intron-3UTR	ENST00000475717	ENST00000422724		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TOP2B	chr3	25683813	-	NGLY1	chr3	25775473	-
Frame-shit	ENST00000389749	ENST00000299155		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	TRMT61A	chr14	103996646	+	AMN	chr14	103394763	+
In-frame	ENST00000305533	ENST00000265342		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TWF2	chr3	52273008	-	FSTL4	chr5	132569229	-
5CDS-5UTR	ENST00000305533	ENST00000507112		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TWF2	chr3	52273008	-	FSTL4	chr5	132569229	-
In-frame	ENST00000499914	ENST00000265342		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TWF2	chr3	52273008	-	FSTL4	chr5	132569229	-
5CDS-5UTR	ENST00000499914	ENST00000507112		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	TWF2	chr3	52273008	-	FSTL4	chr5	132569229	-
Frame-shit	ENST00000348165	ENST00000396153		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
Frame-shit	ENST00000348165	ENST00000371778		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
Frame-shit	ENST00000348165	ENST00000545823		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000348165	ENST00000472808		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000389103	ENST00000396153		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000389103	ENST00000371778		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000389103	ENST00000545823		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
intron-5UTR	ENST00000389103	ENST00000472808		TCGA	RV	BLCA	TCGA-E7-A85H-01A	UBE3C	chr7	157018233	+	FAF1	chr1	51061888	-
In-frame	ENST00000344836	ENST00000357248		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
In-frame	ENST00000344836	ENST00000349721		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
In-frame	ENST00000344836	ENST00000382203		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
In-frame	ENST00000344836	ENST00000382194		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
5CDS-intron	ENST00000344836	ENST00000491574		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
5CDS-5UTR	ENST00000344836	ENST00000324954		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
5CDS-5UTR	ENST00000344836	ENST00000302401		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
5CDS-5UTR	ENST00000344836	ENST00000382186		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
5CDS-5UTR	ENST00000344836	ENST00000382185		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000381886	ENST00000357248		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000381886	ENST00000349721		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000381886	ENST00000382203		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000381886	ENST00000382194		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-intron	ENST00000381886	ENST00000491574		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000381886	ENST00000324954		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000381886	ENST00000302401		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000381886	ENST00000382186		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000381886	ENST00000382185		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000535863	ENST00000357248		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000535863	ENST00000349721		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000535863	ENST00000382203		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000535863	ENST00000382194		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-intron	ENST00000535863	ENST00000491574		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000535863	ENST00000324954		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000535863	ENST00000302401		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000535863	ENST00000382186		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000535863	ENST00000382185		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000566224	ENST00000357248		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000566224	ENST00000349721		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000566224	ENST00000382203		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-3CDS	ENST00000566224	ENST00000382194		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-intron	ENST00000566224	ENST00000491574		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000566224	ENST00000324954		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000566224	ENST00000302401		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000566224	ENST00000382186		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
intron-5UTR	ENST00000566224	ENST00000382185		TCGA	RV	BLCA	TCGA-XF-AAML-01A	USP7	chr16	9057064	-	SMARCA2	chr9	2161686	+
5CDS-intron	ENST00000381602	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000381602	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381602	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381602	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381602	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381602	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381602	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000397962	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000397962	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000397962	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000397962	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000397962	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000397962	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000397962	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000309776	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000309776	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000309776	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000309776	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000309776	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000309776	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000309776	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000509513	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000509513	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000509513	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000509513	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000509513	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000509513	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000509513	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000397959	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000397959	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000397959	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000397959	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000397959	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000397959	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000397959	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381591	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000381591	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381591	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381591	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381591	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381591	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381591	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000403354	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000403354	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000403354	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000403354	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000403354	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000403354	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000403354	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000381607	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000381607	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000381607	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000381607	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000381607	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000381607	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000381607	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000402736	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000402736	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000402736	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000402736	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000402736	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000402736	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000402736	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000602682	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000602682	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000602682	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000602682	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000602682	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000602682	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000602682	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381604	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000381604	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381604	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381604	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381604	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381604	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381604	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381584	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000381584	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381584	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381584	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381584	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381584	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000381584	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000558098	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000558098	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000558098	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000558098	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000558098	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000558098	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-intron	ENST00000558098	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000545619	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000545619	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000545619	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000545619	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000545619	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000545619	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000545619	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000535374	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000535374	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000535374	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000535374	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000535374	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000535374	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000535374	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000473115	ENST00000382275		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-5UTR	ENST00000473115	ENST00000507958		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000473115	ENST00000502796		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000473115	ENST00000511273		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000473115	ENST00000274170		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000473115	ENST00000506372		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
intron-intron	ENST00000473115	ENST00000510297		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ZMYND11	chr10	267296	+	CDH18	chr5	20255614	-
5CDS-5UTR	ENST00000288602	ENST00000393008		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000288602	ENST00000324787		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000288602	ENST00000472343		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000288602	ENST00000496958		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000288602	ENST00000469351		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000288602	ENST00000467334		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000366767	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366767	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000366767	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366767	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366767	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366767	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366767	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366767	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366769	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366769	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000366769	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366769	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366769	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366769	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366769	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366769	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366764	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366764	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000366764	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366764	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366764	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366764	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366764	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366764	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000334218	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000334218	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000334218	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000334218	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000334218	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000334218	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000334218	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000334218	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366766	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366766	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000366766	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366766	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366766	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366766	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366766	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366766	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000535525	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000535525	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000535525	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000535525	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000535525	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000535525	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000535525	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000535525	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366765	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366765	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
In-frame	ENST00000366765	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000366765	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366765	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366765	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366765	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000366765	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488131	ENST00000566780		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488131	ENST00000406884		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488131	ENST00000539474		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488131	ENST00000402655		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-intron	ENST00000488131	ENST00000408984		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-intron	ENST00000488131	ENST00000355860		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-intron	ENST00000488131	ENST00000565791		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
intron-intron	ENST00000488131	ENST00000569818		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CDC42BPA	chr1	227504706	-	WWOX	chr16	79245505	+
5CDS-5UTR	ENST00000388901	ENST00000346329		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000388901	ENST00000301843		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-3UTR	ENST00000388901	ENST00000527622		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000388901	ENST00000376561		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-intron	ENST00000388901	ENST00000538675		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000299259	ENST00000346329		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000299259	ENST00000301843		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-3UTR	ENST00000299259	ENST00000527622		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000299259	ENST00000376561		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-intron	ENST00000299259	ENST00000538675		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000542928	ENST00000346329		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000542928	ENST00000301843		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-3UTR	ENST00000542928	ENST00000527622		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-5UTR	ENST00000542928	ENST00000376561		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
5CDS-intron	ENST00000542928	ENST00000538675		TCGA	RV	BLCA	TCGA-DK-A6B6-01A	COPS2	chr15	49447722	-	CTTN	chr11	70251371	+
Frame-shit	ENST00000585892	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000585892	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000585892	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
5CDS-intron	ENST00000585892	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000314646	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000314646	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000314646	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
5CDS-intron	ENST00000314646	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000359692	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000359692	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000359692	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
5CDS-intron	ENST00000359692	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000389253	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000389253	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000389253	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
5CDS-intron	ENST00000389253	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000355667	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000355667	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000355667	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
5CDS-intron	ENST00000355667	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000408974	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000408974	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
Frame-shit	ENST00000408974	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
5CDS-intron	ENST00000408974	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
intron-3CDS	ENST00000591819	ENST00000303657		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
intron-3CDS	ENST00000591819	ENST00000359161		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
intron-3CDS	ENST00000591819	ENST00000592546		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
intron-intron	ENST00000591819	ENST00000587700		TCGA	RV	BLCA	TCGA-XF-AAMJ-01A	DNM2	chr19	10916643	+	RFX2	chr19	5997224	-
In-frame	ENST00000373816	ENST00000373830		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
5CDS-3UTR	ENST00000373816	ENST00000495995		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
In-frame	ENST00000361872	ENST00000373830		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
5CDS-3UTR	ENST00000361872	ENST00000495995		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
In-frame	ENST00000294409	ENST00000373830		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
5CDS-3UTR	ENST00000294409	ENST00000495995		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
3UTR-3CDS	ENST00000480454	ENST00000373830		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
3UTR-3UTR	ENST00000480454	ENST00000495995		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	GMEB1	chr1	29019557	+	TRNAU1AP	chr1	28887145	+
Frame-shit	ENST00000342160	ENST00000548411		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
Frame-shit	ENST00000342160	ENST00000281474		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000342160	ENST00000551848		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000342160	ENST00000550207		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000342160	ENST00000551086		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
Frame-shit	ENST00000262854	ENST00000548411		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
In-frame	ENST00000262854	ENST00000281474		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000262854	ENST00000551848		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000262854	ENST00000550207		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000262854	ENST00000551086		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
intron-3CDS	ENST00000474288	ENST00000548411		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
intron-3CDS	ENST00000474288	ENST00000281474		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
intron-intron	ENST00000474288	ENST00000551848		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
intron-intron	ENST00000474288	ENST00000550207		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
intron-intron	ENST00000474288	ENST00000551086		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
Frame-shit	ENST00000218328	ENST00000548411		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
In-frame	ENST00000218328	ENST00000281474		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000218328	ENST00000551848		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000218328	ENST00000550207		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
5CDS-intron	ENST00000218328	ENST00000551086		TCGA	RV	BLCA	TCGA-XF-A9SM-01A	HUWE1	chrX	53651556	-	BICD1	chr12	32520604	+
Frame-shit	ENST00000353170	ENST00000565644		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
Frame-shit	ENST00000353170	ENST00000261622		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
Frame-shit	ENST00000347925	ENST00000565644		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
Frame-shit	ENST00000347925	ENST00000261622		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
intron-3CDS	ENST00000566349	ENST00000565644		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
intron-3CDS	ENST00000566349	ENST00000261622		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
Frame-shit	ENST00000270583	ENST00000565644		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
Frame-shit	ENST00000270583	ENST00000261622		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	KLHDC4	chr16	87782279	-	SLC7A5	chr16	87871547	-
5CDS-5UTR	ENST00000170447	ENST00000397010		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000170447	ENST00000309576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000397015		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000170447	ENST00000397012		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000170447	ENST00000397026		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000397000		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000539812		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000287820		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000397010		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000309576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000397015		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000397012		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000397026		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000397000		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000539812		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000287820		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000397010		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000309576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000397015		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000397012		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000397026		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000397000		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000539812		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000287820		TCGA	RV	BLCA	TCGA-XF-AAML-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
In-frame	ENST00000261597	ENST00000400556		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	NDC80	chr18	2579028	+	PPP4R1	chr18	9562073	-
In-frame	ENST00000261597	ENST00000400555		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	NDC80	chr18	2579028	+	PPP4R1	chr18	9562073	-
5CDS-intron	ENST00000261597	ENST00000580583		TCGA	RV	BLCA	TCGA-G2-AA3D-01A	NDC80	chr18	2579028	+	PPP4R1	chr18	9562073	-
5CDS-5UTR	ENST00000435532	ENST00000335625		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5CDS-intron	ENST00000435532	ENST00000355395		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5CDS-5UTR	ENST00000435532	ENST00000400081		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5CDS-3UTR	ENST00000435532	ENST00000557449		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-5UTR	ENST00000338963	ENST00000335625		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-intron	ENST00000338963	ENST00000355395		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-5UTR	ENST00000338963	ENST00000400081		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-3UTR	ENST00000338963	ENST00000557449		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-5UTR	ENST00000508342	ENST00000335625		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-intron	ENST00000508342	ENST00000355395		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-5UTR	ENST00000508342	ENST00000400081		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-3UTR	ENST00000508342	ENST00000557449		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-5UTR	ENST00000506154	ENST00000335625		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-intron	ENST00000506154	ENST00000355395		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-5UTR	ENST00000506154	ENST00000400081		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
intron-3UTR	ENST00000506154	ENST00000557449		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5UTR-5UTR	ENST00000508075	ENST00000335625		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5UTR-intron	ENST00000508075	ENST00000355395		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5UTR-5UTR	ENST00000508075	ENST00000400081		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5UTR-3UTR	ENST00000508075	ENST00000557449		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	NEDD4	chr15	56285709	-	GABRA5	chr15	27113876	+
5CDS-3UTR	ENST00000332830	ENST00000583215		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000332830	ENST00000323372		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000577226	ENST00000583215		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000577226	ENST00000323372		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000268756	ENST00000583215		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000268756	ENST00000323372		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000582655	ENST00000583215		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000582655	ENST00000323372		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PHF12	chr17	27277083	-	PIPOX	chr17	27371877	+
5CDS-intron	ENST00000422959	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000422959	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000422959	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000422959	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000307305	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000307305	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000307305	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000307305	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000424760	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000424760	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000424760	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000424760	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000415251	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000415251	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000415251	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000415251	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000275575	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000275575	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000275575	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000275575	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000450574	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000450574	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000450574	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000450574	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000416283	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000416283	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000416283	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000416283	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000248550	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000248550	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000248550	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5CDS-intron	ENST00000248550	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
3UTR-intron	ENST00000454592	ENST00000471446		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
3UTR-intron	ENST00000454592	ENST00000222547		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
3UTR-intron	ENST00000454592	ENST00000433727		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
3UTR-intron	ENST00000454592	ENST00000425626		TCGA	RV	BLCA	TCGA-BT-A20J-01A	PHTF2	chr7	77539726	+	BET1	chr7	93628606	-
5UTR-3CDS	ENST00000379888	ENST00000394936		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RBM17	chr10	6131156	+	PSAP	chr10	73594262	-
5UTR-3CDS	ENST00000379888	ENST00000394934		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RBM17	chr10	6131156	+	PSAP	chr10	73594262	-
intron-3CDS	ENST00000446108	ENST00000394936		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RBM17	chr10	6131156	+	PSAP	chr10	73594262	-
intron-3CDS	ENST00000446108	ENST00000394934		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RBM17	chr10	6131156	+	PSAP	chr10	73594262	-
intron-3CDS	ENST00000476706	ENST00000394936		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RBM17	chr10	6131156	+	PSAP	chr10	73594262	-
intron-3CDS	ENST00000476706	ENST00000394934		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RBM17	chr10	6131156	+	PSAP	chr10	73594262	-
In-frame	ENST00000399799	ENST00000372581		TCGA	RV	BLCA	TCGA-BT-A3PK-01A	ROCK1	chr18	18603581	-	GUCA2B	chr1	42620351	+
Frame-shit	ENST00000005386	ENST00000080059		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000005386	ENST00000354334		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000005386	ENST00000552960		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000005386	ENST00000380610		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000005386	ENST00000427332		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000005386	ENST00000488927		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
intron-3CDS	ENST00000548211	ENST00000080059		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
intron-3CDS	ENST00000548211	ENST00000354334		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
intron-intron	ENST00000548211	ENST00000552960		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
intron-intron	ENST00000548211	ENST00000380610		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
intron-5UTR	ENST00000548211	ENST00000427332		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
intron-intron	ENST00000548211	ENST00000488927		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5UTR-3CDS	ENST00000432584	ENST00000080059		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5UTR-3CDS	ENST00000432584	ENST00000354334		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5UTR-intron	ENST00000432584	ENST00000552960		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5UTR-intron	ENST00000432584	ENST00000380610		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5UTR-5UTR	ENST00000432584	ENST00000427332		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5UTR-intron	ENST00000432584	ENST00000488927		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000380650	ENST00000080059		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000380650	ENST00000354334		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000380650	ENST00000552960		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000380650	ENST00000380610		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000380650	ENST00000427332		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000380650	ENST00000488927		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	RPAP3	chr12	48095247	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000375759	ENST00000375771		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
5CDS-5UTR	ENST00000375759	ENST00000375766		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
5CDS-5UTR	ENST00000375759	ENST00000400773		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
5CDS-5UTR	ENST00000375759	ENST00000441801		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
5CDS-intron	ENST00000375759	ENST00000332305		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
5CDS-intron	ENST00000375759	ENST00000509138		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
3UTR-5UTR	ENST00000471538	ENST00000375771		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
3UTR-5UTR	ENST00000471538	ENST00000375766		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
3UTR-5UTR	ENST00000471538	ENST00000400773		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
3UTR-5UTR	ENST00000471538	ENST00000441801		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
3UTR-intron	ENST00000471538	ENST00000332305		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
3UTR-intron	ENST00000471538	ENST00000509138		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16090991	+
5UTR-3CDS	ENST00000336308	ENST00000302538		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000336308	ENST00000544583		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000336308	ENST00000572441		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000336308	ENST00000574437		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000336308	ENST00000291107		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000336308	ENST00000543210		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000336308	ENST00000536794		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000336308	ENST00000573895		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-3CDS	ENST00000578232	ENST00000302538		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-3CDS	ENST00000578232	ENST00000544583		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-intron	ENST00000578232	ENST00000572441		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-intron	ENST00000578232	ENST00000574437		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-intron	ENST00000578232	ENST00000291107		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-intron	ENST00000578232	ENST00000543210		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-intron	ENST00000578232	ENST00000536794		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
3UTR-intron	ENST00000578232	ENST00000573895		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000544210	ENST00000302538		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000544210	ENST00000544583		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000544210	ENST00000572441		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000544210	ENST00000574437		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000544210	ENST00000291107		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000544210	ENST00000543210		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000544210	ENST00000536794		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000544210	ENST00000573895		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000394250	ENST00000302538		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000394250	ENST00000544583		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000394250	ENST00000572441		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000394250	ENST00000574437		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000394250	ENST00000291107		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000394250	ENST00000543210		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000394250	ENST00000536794		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000394250	ENST00000573895		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000580611	ENST00000302538		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-3CDS	ENST00000580611	ENST00000544583		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000580611	ENST00000572441		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000580611	ENST00000574437		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000580611	ENST00000291107		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000580611	ENST00000543210		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000580611	ENST00000536794		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5UTR-intron	ENST00000580611	ENST00000573895		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	STARD3	chr17	37793484	+	ABR	chr17	973330	-
5CDS-3UTR	ENST00000550746	ENST00000435070		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000550746	ENST00000456847		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000550746	ENST00000266679		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000550746	ENST00000550987		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000550746	ENST00000551516		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000319106	ENST00000435070		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000319106	ENST00000456847		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000319106	ENST00000266679		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000319106	ENST00000550987		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000319106	ENST00000551516		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000485960	ENST00000435070		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000485960	ENST00000456847		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000485960	ENST00000266679		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000485960	ENST00000550987		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000485960	ENST00000551516		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000393309	ENST00000435070		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000393309	ENST00000456847		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000393309	ENST00000266679		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000393309	ENST00000550987		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000393309	ENST00000551516		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000548679	ENST00000435070		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000548679	ENST00000456847		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000548679	ENST00000266679		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
intron-intron	ENST00000548679	ENST00000550987		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
intron-intron	ENST00000548679	ENST00000551516		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	TBC1D15	chr12	72312328	+	CPSF6	chr12	69663292	+
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	BLCA	TCGA-KQ-A41N-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
5UTR-3CDS	ENST00000565698	ENST00000311635		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	XPO6	chr16	28222687	-	FBXO31	chr16	87393972	-
5UTR-intron	ENST00000565698	ENST00000563956		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	XPO6	chr16	28222687	-	FBXO31	chr16	87393972	-
Frame-shit	ENST00000304658	ENST00000311635		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	XPO6	chr16	28222687	-	FBXO31	chr16	87393972	-
5CDS-intron	ENST00000304658	ENST00000563956		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	XPO6	chr16	28222687	-	FBXO31	chr16	87393972	-
intron-3CDS	ENST00000561488	ENST00000311635		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	XPO6	chr16	28222687	-	FBXO31	chr16	87393972	-
intron-intron	ENST00000561488	ENST00000563956		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	XPO6	chr16	28222687	-	FBXO31	chr16	87393972	-
5CDS-5UTR	ENST00000367590	ENST00000368006		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367590	ENST00000458050		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367590	ENST00000545495		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367590	ENST00000392188		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-intron	ENST00000367590	ENST00000489249		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367590	ENST00000490843		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367590	ENST00000368005		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367589	ENST00000368006		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367589	ENST00000458050		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367589	ENST00000545495		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367589	ENST00000392188		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-intron	ENST00000367589	ENST00000489249		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367589	ENST00000490843		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
5CDS-5UTR	ENST00000367589	ENST00000368005		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-5UTR	ENST00000467345	ENST00000368006		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-5UTR	ENST00000467345	ENST00000458050		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-5UTR	ENST00000467345	ENST00000545495		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-5UTR	ENST00000467345	ENST00000392188		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-intron	ENST00000467345	ENST00000489249		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-5UTR	ENST00000467345	ENST00000490843		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
intron-5UTR	ENST00000467345	ENST00000368005		TCGA	RV	BLCA	TCGA-DK-AA75-01A	XPR1	chr1	180651547	+	DEDD	chr1	161094316	-
In-frame	ENST00000412704	ENST00000376747		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000412704	ENST00000376714		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000412704	ENST00000397618		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000412704	ENST00000467305		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000412704	ENST00000376712		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
In-frame	ENST00000376887	ENST00000376747		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000376887	ENST00000376714		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000376887	ENST00000397618		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000376887	ENST00000467305		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000376887	ENST00000376712		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
In-frame	ENST00000536256	ENST00000376747		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000536256	ENST00000376714		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000536256	ENST00000397618		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000536256	ENST00000467305		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000536256	ENST00000376712		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
In-frame	ENST00000431522	ENST00000376747		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000431522	ENST00000376714		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000431522	ENST00000397618		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000431522	ENST00000467305		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
5CDS-intron	ENST00000431522	ENST00000376712		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-3CDS	ENST00000538287	ENST00000376747		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000538287	ENST00000376714		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000538287	ENST00000397618		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000538287	ENST00000467305		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000538287	ENST00000376712		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-3CDS	ENST00000474158	ENST00000376747		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000474158	ENST00000376714		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000474158	ENST00000397618		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000474158	ENST00000467305		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-intron	ENST00000474158	ENST00000376712		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ABCC4	chr13	95813443	-	UGGT2	chr13	96454066	-
intron-3CDS	ENST00000298834	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000298834	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000298834	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000298834	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-intron	ENST00000298834	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000426438	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000426438	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000426438	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000426438	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-intron	ENST00000426438	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000314845	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000314845	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000314845	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000314845	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-intron	ENST00000314845	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000533727	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000533727	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000533727	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000533727	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-intron	ENST00000533727	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000534300	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000534300	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000534300	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000534300	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-intron	ENST00000534300	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000458649	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000458649	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000458649	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000458649	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-intron	ENST00000458649	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000528950	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000528950	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000528950	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-3CDS	ENST00000528950	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
5UTR-intron	ENST00000528950	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000529963	ENST00000529230		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000529963	ENST00000415402		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000529963	ENST00000312055		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000529963	ENST00000354558		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-intron	ENST00000529963	ENST00000532321		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	AMBRA1	chr11	46615378	-	CKAP5	chr11	46806223	-
intron-3CDS	ENST00000376070	ENST00000378714		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
intron-3CDS	ENST00000376070	ENST00000484800		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
intron-3CDS	ENST00000376070	ENST00000378694		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
Frame-shit	ENST00000376087	ENST00000378714		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
Frame-shit	ENST00000376087	ENST00000484800		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
In-frame	ENST00000376087	ENST00000378694		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
Frame-shit	ENST00000436985	ENST00000378714		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
Frame-shit	ENST00000436985	ENST00000484800		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
In-frame	ENST00000436985	ENST00000378694		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
intron-3CDS	ENST00000466890	ENST00000378714		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
intron-3CDS	ENST00000466890	ENST00000484800		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
intron-3CDS	ENST00000466890	ENST00000378694		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	ANKRD26	chr10	27389014	-	MCM10	chr10	13251091	+
5CDS-5UTR	ENST00000359373	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000359373	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000359373	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000359373	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000359373	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000359373	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5UTR-5UTR	ENST00000495878	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5UTR-intron	ENST00000495878	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5UTR-intron	ENST00000495878	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5UTR-intron	ENST00000495878	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5UTR-intron	ENST00000495878	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5UTR-intron	ENST00000495878	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-5UTR	ENST00000455638	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000455638	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000455638	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000455638	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000455638	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000455638	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-5UTR	ENST00000393605	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393605	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393605	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393605	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393605	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393605	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-5UTR	ENST00000334211	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000334211	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000334211	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000334211	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000334211	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000334211	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-5UTR	ENST00000393609	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393609	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393609	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393609	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393609	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000393609	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-5UTR	ENST00000426523	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000426523	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000426523	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000426523	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000426523	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000426523	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-5UTR	ENST00000429686	ENST00000336232		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000429686	ENST00000545207		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000429686	ENST00000535878		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000429686	ENST00000311438		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000429686	ENST00000430500		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000429686	ENST00000542795		TCGA	RV	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72404370	-	SLC22A8	chr11	62782455	-
5CDS-intron	ENST00000535334	ENST00000470610		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000535334	ENST00000389672		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000535334	ENST00000542517		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000535334	ENST00000514100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000535334	ENST00000502694		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000535334	ENST00000442602		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000303097	ENST00000470610		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000303097	ENST00000389672		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000303097	ENST00000542517		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000303097	ENST00000514100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000303097	ENST00000502694		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000303097	ENST00000442602		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000394222	ENST00000470610		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000394222	ENST00000389672		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000394222	ENST00000542517		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000394222	ENST00000514100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000394222	ENST00000502694		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000394222	ENST00000442602		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000539730	ENST00000470610		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000539730	ENST00000389672		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000539730	ENST00000542517		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000539730	ENST00000514100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000539730	ENST00000502694		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000539730	ENST00000442602		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000471138	ENST00000470610		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000471138	ENST00000389672		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000471138	ENST00000542517		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000471138	ENST00000514100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000471138	ENST00000502694		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
5CDS-intron	ENST00000471138	ENST00000442602		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000486562	ENST00000470610		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000486562	ENST00000389672		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000486562	ENST00000542517		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000486562	ENST00000514100		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000486562	ENST00000502694		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-intron	ENST00000486562	ENST00000442602		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	ARL13B	chr3	93722752	+	EPHA6	chr3	96728848	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A13J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000284000	ENST00000444215		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	CEBPG	chr19	33864801	+	TDRD12	chr19	33239382	+
5UTR-3CDS	ENST00000284000	ENST00000421545		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	CEBPG	chr19	33864801	+	TDRD12	chr19	33239382	+
intron-3CDS	ENST00000585933	ENST00000444215		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	CEBPG	chr19	33864801	+	TDRD12	chr19	33239382	+
intron-3CDS	ENST00000585933	ENST00000421545		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	CEBPG	chr19	33864801	+	TDRD12	chr19	33239382	+
5CDS-intron	ENST00000229195	ENST00000359019		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000229195	ENST00000334822		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000229195	ENST00000426126		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000229195	ENST00000550789		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000418359	ENST00000359019		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000418359	ENST00000334822		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000418359	ENST00000426126		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000418359	ENST00000550789		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000548230	ENST00000359019		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000548230	ENST00000334822		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000548230	ENST00000426126		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000548230	ENST00000550789		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000551483	ENST00000359019		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000551483	ENST00000334822		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000551483	ENST00000426126		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
intron-intron	ENST00000551483	ENST00000550789		TCGA	RV	BLCA	TCGA-XF-A9SH-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77220688	+
5CDS-intron	ENST00000311085	ENST00000409869		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000311085	ENST00000295095		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000311085	ENST00000473426		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000539542	ENST00000409869		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000539542	ENST00000295095		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000539542	ENST00000473426		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
intron-intron	ENST00000505312	ENST00000409869		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
intron-intron	ENST00000505312	ENST00000295095		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
intron-intron	ENST00000505312	ENST00000473426		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	DMXL1	chr5	118407351	+	ARHGAP15	chr2	144193170	+
In-frame	ENST00000521400	ENST00000544172		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521400	ENST00000397501		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521400	ENST00000338238		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521400	ENST00000346049		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521400	ENST00000420218		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521400	ENST00000517339		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000521400	ENST00000519650		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000521400	ENST00000397497		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000517536	ENST00000544172		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000517536	ENST00000397501		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000517536	ENST00000338238		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000517536	ENST00000346049		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000517536	ENST00000420218		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000517536	ENST00000517339		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000517536	ENST00000519650		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000517536	ENST00000397497		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521780	ENST00000544172		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521780	ENST00000397501		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521780	ENST00000338238		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521780	ENST00000346049		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521780	ENST00000420218		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000521780	ENST00000517339		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000521780	ENST00000519650		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000521780	ENST00000397497		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000380476	ENST00000544172		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000380476	ENST00000397501		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000380476	ENST00000338238		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000380476	ENST00000346049		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000380476	ENST00000420218		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000380476	ENST00000517339		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000380476	ENST00000519650		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000380476	ENST00000397497		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000518379	ENST00000544172		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000518379	ENST00000397501		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000518379	ENST00000338238		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000518379	ENST00000346049		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000518379	ENST00000420218		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
In-frame	ENST00000518379	ENST00000517339		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000518379	ENST00000519650		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
5CDS-intron	ENST00000518379	ENST00000397497		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-3CDS	ENST00000520666	ENST00000544172		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-3CDS	ENST00000520666	ENST00000397501		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-3CDS	ENST00000520666	ENST00000338238		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-3CDS	ENST00000520666	ENST00000346049		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-3CDS	ENST00000520666	ENST00000420218		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-3CDS	ENST00000520666	ENST00000517339		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-intron	ENST00000520666	ENST00000519650		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
intron-intron	ENST00000520666	ENST00000397497		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	EPHX2	chr8	27375589	+	PTK2B	chr8	27308266	+
Frame-shit	ENST00000361577	ENST00000282146		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	FAM179B	chr14	45523752	+	KCNK13	chr14	90650455	+
3UTR-3CDS	ENST00000382233	ENST00000282146		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	FAM179B	chr14	45523752	+	KCNK13	chr14	90650455	+
Frame-shit	ENST00000361462	ENST00000282146		TCGA	RV	BLCA	TCGA-2F-A9KO-01A	FAM179B	chr14	45523752	+	KCNK13	chr14	90650455	+
In-frame	ENST00000348697	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000348697	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000402984	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000402984	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000262722	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000262722	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000327858	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000327858	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000442170	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000442170	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000340923	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
In-frame	ENST00000340923	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
intron-3CDS	ENST00000476366	ENST00000357450		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
intron-3CDS	ENST00000476366	ENST00000404354		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	FBLN1	chr22	45898944	+	SMC1B	chr22	45804779	-
5UTR-3CDS	ENST00000281708	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000281708	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3UTR	ENST00000281708	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000603548	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000603548	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3UTR	ENST00000603548	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000604872	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000604872	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3UTR	ENST00000604872	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000296555	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000296555	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3UTR	ENST00000296555	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000263981	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000263981	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3UTR	ENST00000263981	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000393956	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000393956	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3UTR	ENST00000393956	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000603841	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3CDS	ENST00000603841	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
intron-3UTR	ENST00000603841	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000604095	ENST00000336498		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3CDS	ENST00000604095	ENST00000414545		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
5UTR-3UTR	ENST00000604095	ENST00000510076		TCGA	RV	BLCA	TCGA-DK-A2HX-01A	FBXW7	chr4	153456093	-	ARHGAP10	chr4	148993144	+
Frame-shit	ENST00000304718	ENST00000315769		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	GGNBP2	chr17	34913176	+	ZMAT4	chr8	40554920	-
Frame-shit	ENST00000304718	ENST00000297737		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	GGNBP2	chr17	34913176	+	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000304718	ENST00000523823		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	GGNBP2	chr17	34913176	+	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000485685	ENST00000315769		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	GGNBP2	chr17	34913176	+	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000485685	ENST00000297737		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	GGNBP2	chr17	34913176	+	ZMAT4	chr8	40554920	-
intron-intron	ENST00000485685	ENST00000523823		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	GGNBP2	chr17	34913176	+	ZMAT4	chr8	40554920	-
Frame-shit	ENST00000325110	ENST00000519716		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000325110	ENST00000252773		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000325110	ENST00000428389		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000325110	ENST00000551649		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000325110	ENST00000552293		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000325110	ENST00000550896		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000433297	ENST00000519716		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000433297	ENST00000252773		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000433297	ENST00000428389		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000433297	ENST00000551649		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000433297	ENST00000552293		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
Frame-shit	ENST00000433297	ENST00000550896		TCGA	RV	BLCA	TCGA-FD-A62P-01A	HMGCS1	chr5	43292950	-	UNC13A	chr19	17756920	-
In-frame	ENST00000376462	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376462	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376462	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376462	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376462	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
5CDS-intron	ENST00000376462	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000481700	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000481700	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000481700	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000481700	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000481700	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-intron	ENST00000481700	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000458595	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000458595	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000458595	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000458595	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000458595	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
5CDS-intron	ENST00000458595	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376454	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376454	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376454	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376454	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376454	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
5CDS-intron	ENST00000376454	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376452	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376452	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376452	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376452	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000376452	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
5CDS-intron	ENST00000376452	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000430453	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000430453	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000430453	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000430453	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
In-frame	ENST00000430453	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
5CDS-intron	ENST00000430453	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000307544	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000307544	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000307544	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000307544	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000307544	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-intron	ENST00000307544	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396446	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396446	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396446	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396446	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396446	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-intron	ENST00000396446	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396445	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396445	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396445	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396445	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000396445	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-intron	ENST00000396445	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000376451	ENST00000538630		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000376451	ENST00000376601		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000376451	ENST00000376603		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000376451	ENST00000376624		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-3CDS	ENST00000376451	ENST00000313311		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
intron-intron	ENST00000376451	ENST00000490361		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	KIAA1217	chr10	24669996	+	SPAG6	chr10	22653782	+
Frame-shit	ENST00000325212	ENST00000549091		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000325212	ENST00000293879		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000325212	ENST00000547543		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000325212	ENST00000547944		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000325212	ENST00000315764		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000344196	ENST00000549091		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000344196	ENST00000293879		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000344196	ENST00000547543		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000344196	ENST00000547944		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000344196	ENST00000315764		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000411936	ENST00000549091		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000411936	ENST00000293879		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000411936	ENST00000547543		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000411936	ENST00000547944		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000411936	ENST00000315764		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000531700	ENST00000549091		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
Frame-shit	ENST00000531700	ENST00000293879		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000531700	ENST00000547543		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000531700	ENST00000547944		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5CDS-intron	ENST00000531700	ENST00000315764		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
intron-3CDS	ENST00000531622	ENST00000549091		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
intron-3CDS	ENST00000531622	ENST00000293879		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
intron-intron	ENST00000531622	ENST00000547543		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
intron-intron	ENST00000531622	ENST00000547944		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
intron-intron	ENST00000531622	ENST00000315764		TCGA	RV	BLCA	TCGA-HQ-A2OE-01A	KIAA1731	chr11	93440063	+	WDR90	chr16	705307	+
5UTR-3CDS	ENST00000167462	ENST00000607838		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000591724		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000332065		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000589210		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000335146		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000467929		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000405575		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000411744		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000167462	ENST00000406660		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-3CDS	ENST00000375227	ENST00000607838		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000591724		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000332065		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000589210		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000335146		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000467929		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000405575		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000411744		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000375227	ENST00000406660		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-3CDS	ENST00000392550	ENST00000607838		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000591724		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000332065		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000589210		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000335146		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000467929		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000405575		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000411744		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000392550	ENST00000406660		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-3CDS	ENST00000578363	ENST00000607838		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000591724		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000332065		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000589210		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000335146		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000467929		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000405575		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000411744		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
5UTR-intron	ENST00000578363	ENST00000406660		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-3CDS	ENST00000577200	ENST00000607838		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000591724		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000332065		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000589210		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000335146		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000467929		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000405575		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000411744		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
intron-intron	ENST00000577200	ENST00000406660		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	LLGL2	chr17	73521906	+	EXOC7	chr17	74083801	-
In-frame	ENST00000404816	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000404816	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000404816	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000404816	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000354476	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000354476	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000354476	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000354476	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000390003	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000390003	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000390003	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000390003	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000418533	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000418533	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000418533	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000418533	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000402934	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000402934	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000402934	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000402934	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000404525	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000404525	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000404525	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000404525	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000407925	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000407925	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000407925	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
5CDS-intron	ENST00000407925	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-3CDS	ENST00000272273	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-3CDS	ENST00000272273	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-intron	ENST00000272273	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-intron	ENST00000272273	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-3CDS	ENST00000498013	ENST00000327757		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-3CDS	ENST00000498013	ENST00000422425		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-intron	ENST00000498013	ENST00000541605		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
intron-intron	ENST00000498013	ENST00000329020		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	LTBP1	chr2	33413918	+	PLB1	chr2	28771727	+
In-frame	ENST00000355893	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000355893	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000355893	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000355893	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000355893	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000355893	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000484955	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000484955	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000484955	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000484955	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000484955	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000484955	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000359117	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000359117	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000359117	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000359117	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000359117	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000359117	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000471745	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000471745	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000471745	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000471745	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000471745	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000471745	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
3UTR-3CDS	ENST00000497004	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
3UTR-3CDS	ENST00000497004	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
3UTR-3CDS	ENST00000497004	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
3UTR-3CDS	ENST00000497004	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
3UTR-intron	ENST00000497004	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
3UTR-intron	ENST00000497004	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000469452	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000469452	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000469452	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000469452	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000469452	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000469452	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000482628	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000482628	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000482628	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000482628	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000482628	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000482628	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000478894	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000478894	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000478894	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000478894	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000478894	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000478894	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000392822	ENST00000480820		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000392822	ENST00000295930		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000392822	ENST00000464171		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
In-frame	ENST00000392822	ENST00000312179		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000392822	ENST00000475278		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
5CDS-intron	ENST00000392822	ENST00000496268		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MLF1	chr3	158310370	+	RSRC1	chr3	158261124	+
Frame-shit	ENST00000261681	ENST00000315266		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
Frame-shit	ENST00000261681	ENST00000478722		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000261681	ENST00000459628		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000261681	ENST00000543237		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000261681	ENST00000305960		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
Frame-shit	ENST00000555925	ENST00000315266		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
Frame-shit	ENST00000555925	ENST00000478722		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000555925	ENST00000459628		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000555925	ENST00000543237		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000555925	ENST00000305960		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
5CDS-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-intron	ENST00000554911	ENST00000459628		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-intron	ENST00000554911	ENST00000543237		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-intron	ENST00000554911	ENST00000305960		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-intron	ENST00000556345	ENST00000459628		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-intron	ENST00000556345	ENST00000543237		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-intron	ENST00000556345	ENST00000305960		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
intron-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	BLCA	TCGA-FD-A3N6-01A	MPP5	chr14	67779427	+	GPHN	chr14	67646295	+
Frame-shit	ENST00000313608	ENST00000393066		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000313608	ENST00000262294		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000313608	ENST00000376149		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000313608	ENST00000393065		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
5CDS-intron	ENST00000313608	ENST00000584889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000578444	ENST00000393066		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000578444	ENST00000262294		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000578444	ENST00000376149		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000578444	ENST00000393065		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
5CDS-intron	ENST00000578444	ENST00000584889		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MRPS23	chr17	55926601	-	TRIM37	chr17	57076820	-
Frame-shit	ENST00000545908	ENST00000381166		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000545908	ENST00000427855		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000545908	ENST00000340738		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000545908	ENST00000554301		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000545908	ENST00000555445		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
5CDS-intron	ENST00000545908	ENST00000554314		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000216605	ENST00000381166		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000216605	ENST00000427855		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000216605	ENST00000340738		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000216605	ENST00000554301		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
Frame-shit	ENST00000216605	ENST00000555445		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
5CDS-intron	ENST00000216605	ENST00000554314		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
intron-3CDS	ENST00000556284	ENST00000381166		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
intron-3CDS	ENST00000556284	ENST00000427855		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
intron-3CDS	ENST00000556284	ENST00000340738		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
intron-3CDS	ENST00000556284	ENST00000554301		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
intron-3CDS	ENST00000556284	ENST00000555445		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
intron-intron	ENST00000556284	ENST00000554314		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	MTHFD1	chr14	64855186	+	PAPLN	chr14	73711352	+
In-frame	ENST00000371714	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371714	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371714	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371714	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371714	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
In-frame	ENST00000371710	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371710	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371710	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371710	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000371710	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
In-frame	ENST00000337809	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000337809	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000337809	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000337809	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000337809	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5UTR-3CDS	ENST00000435686	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5UTR-intron	ENST00000435686	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5UTR-intron	ENST00000435686	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5UTR-intron	ENST00000435686	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5UTR-intron	ENST00000435686	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
In-frame	ENST00000447887	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000447887	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000447887	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000447887	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000447887	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000453295	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000453295	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000453295	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000453295	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000453295	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
In-frame	ENST00000428468	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000428468	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000428468	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000428468	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
5CDS-intron	ENST00000428468	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000530544	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000530544	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000530544	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000530544	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000530544	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000531828	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000531828	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000531828	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000531828	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000531828	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000361556	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000361556	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000361556	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000361556	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000361556	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000473207	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000473207	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000473207	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000473207	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000473207	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000462759	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000462759	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000462759	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000462759	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000462759	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000486942	ENST00000371839		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000486942	ENST00000371838		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000486942	ENST00000371836		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000486942	ENST00000334103		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-intron	ENST00000486942	ENST00000497451		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	OSBPL9	chr1	52117713	+	AGBL4	chr1	49056657	-
intron-3CDS	ENST00000536985	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000536985	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000536985	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000536985	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-3CDS	ENST00000379789	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000379789	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000379789	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000379789	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-3CDS	ENST00000540253	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000540253	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000540253	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
intron-intron	ENST00000540253	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
Frame-shit	ENST00000317350	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000317350	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000317350	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000317350	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
Frame-shit	ENST00000379785	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379785	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379785	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379785	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
Frame-shit	ENST00000379782	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379782	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379782	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379782	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
Frame-shit	ENST00000360521	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000360521	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000360521	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000360521	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
Frame-shit	ENST00000379775	ENST00000380191		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379775	ENST00000479928		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379775	ENST00000380132		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
5CDS-intron	ENST00000379775	ENST00000380181		TCGA	RV	BLCA	TCGA-FD-A5BS-01A	PFKFB3	chr10	6245299	+	GDI2	chr10	5842668	-
In-frame	ENST00000329153	ENST00000315266		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
In-frame	ENST00000329153	ENST00000478722		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
Frame-shit	ENST00000329153	ENST00000459628		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
In-frame	ENST00000329153	ENST00000543237		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
In-frame	ENST00000329153	ENST00000305960		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
5CDS-3UTR	ENST00000329153	ENST00000544752		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000417684	ENST00000315266		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000417684	ENST00000478722		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000417684	ENST00000459628		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000417684	ENST00000543237		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000417684	ENST00000305960		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3UTR	ENST00000417684	ENST00000544752		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000559832	ENST00000315266		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000559832	ENST00000478722		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000559832	ENST00000459628		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000559832	ENST00000543237		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3CDS	ENST00000559832	ENST00000305960		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
intron-3UTR	ENST00000559832	ENST00000544752		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	PLEKHH1	chr14	68028752	+	GPHN	chr14	67525366	+
In-frame	ENST00000399448	ENST00000396725		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000399448	ENST00000251761		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000399448	ENST00000606935		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
5CDS-intron	ENST00000399448	ENST00000538102		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000447931	ENST00000396725		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000447931	ENST00000251761		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000447931	ENST00000606935		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
5CDS-intron	ENST00000447931	ENST00000538102		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000318974	ENST00000396725		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000318974	ENST00000251761		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000318974	ENST00000606935		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
5CDS-intron	ENST00000318974	ENST00000538102		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000456013	ENST00000396725		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000456013	ENST00000251761		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
In-frame	ENST00000456013	ENST00000606935		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
5CDS-intron	ENST00000456013	ENST00000538102		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
intron-3CDS	ENST00000539029	ENST00000396725		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
intron-3CDS	ENST00000539029	ENST00000251761		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
intron-3CDS	ENST00000539029	ENST00000606935		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
intron-intron	ENST00000539029	ENST00000538102		TCGA	RV	BLCA	TCGA-FD-A3NA-01A	PTPN6	chr12	7066948	+	LEPREL2	chr12	6948164	+
Frame-shit	ENST00000399799	ENST00000274024		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	ROCK1	chr18	18690779	-	FABP2	chr4	120241997	-
5CDS-intron	ENST00000373710	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000373710	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000373710	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000536859	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000536859	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000536859	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000373709	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000373709	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000373709	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000536384	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000536384	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000536384	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000491976	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000491976	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000491976	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SERINC2	chr1	31907521	+	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000548724	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000548724	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000548724	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000548724	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000548724	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
Frame-shit	ENST00000396700	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000396700	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000396700	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000396700	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000396700	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
In-frame	ENST00000323944	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000323944	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000323944	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000323944	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000323944	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
Frame-shit	ENST00000419632	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000419632	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000419632	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000419632	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000419632	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
In-frame	ENST00000546511	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000546511	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000546511	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000546511	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000546511	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
In-frame	ENST00000550887	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000550887	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000550887	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000550887	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000550887	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
In-frame	ENST00000358326	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000358326	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000358326	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-5UTR	ENST00000358326	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
5CDS-intron	ENST00000358326	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-3CDS	ENST00000548369	ENST00000229729		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-5UTR	ENST00000548369	ENST00000544672		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-5UTR	ENST00000548369	ENST00000375562		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-5UTR	ENST00000548369	ENST00000465707		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000417894		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000550821		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000550401		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000492911		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000453831		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000546461		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000551168		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000495620		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000425238		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000548188		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000549663		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000469478		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000415517		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000547288		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000547493		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000463111		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000383379		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000547684		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000549677		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000497745		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000366281		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000442152		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000553147		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000553121		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
intron-intron	ENST00000548369	ENST00000495181		TCGA	RV	BLCA	TCGA-KQ-A41Q-01A	STXBP6	chr14	25443871	-	SLC44A4	chr6	31844859	-
Frame-shit	ENST00000215567	ENST00000160262		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5CDS-5UTR	ENST00000215567	ENST00000589261		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5UTR-3CDS	ENST00000596073	ENST00000160262		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5UTR-5UTR	ENST00000596073	ENST00000589261		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5UTR-3CDS	ENST00000600083	ENST00000160262		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5UTR-5UTR	ENST00000600083	ENST00000589261		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5UTR-3CDS	ENST00000436007	ENST00000160262		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
5UTR-5UTR	ENST00000436007	ENST00000589261		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
3UTR-3CDS	ENST00000596164	ENST00000160262		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
3UTR-5UTR	ENST00000596164	ENST00000589261		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	TECR	chr19	14640523	+	ICAM3	chr19	10449624	-
intron-3CDS	ENST00000570081	ENST00000260403		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
intron-intron	ENST00000570081	ENST00000569369		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
In-frame	ENST00000260383	ENST00000260403		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
5CDS-intron	ENST00000260383	ENST00000569369		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
In-frame	ENST00000564079	ENST00000260403		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
5CDS-intron	ENST00000564079	ENST00000569369		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
In-frame	ENST00000399460	ENST00000260403		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
5CDS-intron	ENST00000399460	ENST00000569369		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43452879	+
5CDS-5UTR	ENST00000565698	ENST00000411504		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000565698	ENST00000313838		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000565698	ENST00000399187		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000565698	ENST00000584166		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000565698	ENST00000399182		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-intron	ENST00000565698	ENST00000583995		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000304658	ENST00000411504		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000304658	ENST00000313838		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000304658	ENST00000399187		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000304658	ENST00000584166		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000304658	ENST00000399182		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
5CDS-intron	ENST00000304658	ENST00000583995		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000561488	ENST00000411504		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000561488	ENST00000313838		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000561488	ENST00000399187		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000561488	ENST00000584166		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000561488	ENST00000399182		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
intron-intron	ENST00000561488	ENST00000583995		TCGA	RV	BLCA	TCGA-H4-A2HQ-01A	XPO6	chr16	28163980	-	LRRC48	chr17	17877166	+
In-frame	ENST00000356015	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000432560	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000357586	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000405198	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000317368	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000402502	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000415447	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
intron-3CDS	ENST00000472057	ENST00000324198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	AP1B1	chr22	29750639	-	ADRBK2	chr22	26091074	+
In-frame	ENST00000261275	ENST00000333743		TCGA	RV	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29544572	-	GABRG3	chr15	27571956	+
In-frame	ENST00000261275	ENST00000555083		TCGA	RV	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29544572	-	GABRG3	chr15	27571956	+
5CDS-intron	ENST00000261275	ENST00000554786		TCGA	RV	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29544572	-	GABRG3	chr15	27571956	+
intron-3CDS	ENST00000560050	ENST00000333743		TCGA	RV	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29544572	-	GABRG3	chr15	27571956	+
intron-3CDS	ENST00000560050	ENST00000555083		TCGA	RV	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29544572	-	GABRG3	chr15	27571956	+
intron-intron	ENST00000560050	ENST00000554786		TCGA	RV	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29544572	-	GABRG3	chr15	27571956	+
5UTR-5UTR	ENST00000375592	ENST00000466212		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
5UTR-5UTR	ENST00000375592	ENST00000335496		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
5UTR-5UTR	ENST00000375592	ENST00000540400		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
5UTR-intron	ENST00000375592	ENST00000375577		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
intron-5UTR	ENST00000478089	ENST00000466212		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
intron-5UTR	ENST00000478089	ENST00000335496		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
intron-5UTR	ENST00000478089	ENST00000540400		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
intron-intron	ENST00000478089	ENST00000375577		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	FBXO42	chr1	16678750	-	SPATA21	chr1	16731599	-
5UTR-3CDS	ENST00000299293	ENST00000547511		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
5UTR-3CDS	ENST00000299293	ENST00000257867		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
5UTR-3CDS	ENST00000549921	ENST00000547511		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
5UTR-3CDS	ENST00000549921	ENST00000257867		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
5UTR-3CDS	ENST00000550389	ENST00000547511		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
5UTR-3CDS	ENST00000550389	ENST00000257867		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
intron-3CDS	ENST00000397997	ENST00000547511		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
intron-3CDS	ENST00000397997	ENST00000257867		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	FRS2	chr12	69864310	+	LACRT	chr12	55027017	-
5UTR-3CDS	ENST00000367604	ENST00000367800		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000367604	ENST00000457866		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000367604	ENST00000417892		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367604	ENST00000327035		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367604	ENST00000488690		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367604	ENST00000367798		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367604	ENST00000528103		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367604	ENST00000534469		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367604	ENST00000531527		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000367603	ENST00000367800		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000367603	ENST00000457866		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000367603	ENST00000417892		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367603	ENST00000327035		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367603	ENST00000488690		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367603	ENST00000367798		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367603	ENST00000528103		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367603	ENST00000534469		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000367603	ENST00000531527		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000012134	ENST00000367800		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000012134	ENST00000457866		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000012134	ENST00000417892		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000012134	ENST00000327035		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000012134	ENST00000488690		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000012134	ENST00000367798		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000012134	ENST00000528103		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000012134	ENST00000534469		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000012134	ENST00000531527		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000474532	ENST00000367800		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000474532	ENST00000457866		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-3CDS	ENST00000474532	ENST00000417892		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000474532	ENST00000327035		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000474532	ENST00000488690		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000474532	ENST00000367798		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000474532	ENST00000528103		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000474532	ENST00000534469		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
5UTR-intron	ENST00000474532	ENST00000531527		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	HIVEP2	chr6	143158072	-	AHI1	chr6	135639754	-
In-frame	ENST00000355072	ENST00000398051		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
In-frame	ENST00000355072	ENST00000398052		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
In-frame	ENST00000355072	ENST00000504933		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
In-frame	ENST00000355072	ENST00000345167		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
5CDS-intron	ENST00000355072	ENST00000503518		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
5CDS-intron	ENST00000355072	ENST00000442472		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
5CDS-intron	ENST00000355072	ENST00000509545		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-3CDS	ENST00000513806	ENST00000398051		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-3CDS	ENST00000513806	ENST00000398052		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-3CDS	ENST00000513806	ENST00000504933		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-3CDS	ENST00000513806	ENST00000345167		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-intron	ENST00000513806	ENST00000503518		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-intron	ENST00000513806	ENST00000442472		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
intron-intron	ENST00000513806	ENST00000509545		TCGA	RV	BLCA	TCGA-CU-A3QU-01A	HTT	chr4	3132150	+	GRK4	chr4	3015415	+
5UTR-3CDS	ENST00000540664	ENST00000590474		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000540664	ENST00000589647		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000371103	ENST00000590474		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000371103	ENST00000589647		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000356016	ENST00000590474		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000356016	ENST00000589647		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000371097	ENST00000590474		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
5UTR-3CDS	ENST00000371097	ENST00000589647		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
intron-3CDS	ENST00000498444	ENST00000590474		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
intron-3CDS	ENST00000498444	ENST00000589647		TCGA	RV	BLCA	TCGA-DK-AA76-01A	LCOR	chr10	98667504	+	MAP2K6	chr17	67521042	+
Frame-shit	ENST00000329474	ENST00000307886		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	LRRC16A	chr6	25581667	+	CTSW	chr11	65648878	+
Frame-shit	ENST00000329474	ENST00000528419		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	LRRC16A	chr6	25581667	+	CTSW	chr11	65648878	+
intron-3CDS	ENST00000377969	ENST00000307886		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	LRRC16A	chr6	25581667	+	CTSW	chr11	65648878	+
intron-3CDS	ENST00000377969	ENST00000528419		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	LRRC16A	chr6	25581667	+	CTSW	chr11	65648878	+
intron-3CDS	ENST00000476458	ENST00000307886		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	LRRC16A	chr6	25581667	+	CTSW	chr11	65648878	+
intron-3CDS	ENST00000476458	ENST00000528419		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	LRRC16A	chr6	25581667	+	CTSW	chr11	65648878	+
Frame-shit	ENST00000377809	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000402010	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000413835	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
5UTR-3CDS	ENST00000377810	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000315032	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000508192	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000361128	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000350490	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000502399	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000509502	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000513765	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000408948	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000425897	ENST00000294244		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000397601	ENST00000311507		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-3CDS	ENST00000397601	ENST00000411416		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-intron	ENST00000397601	ENST00000515389		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-5UTR	ENST00000397601	ENST00000509973		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-5UTR	ENST00000397601	ENST00000505406		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-5UTR	ENST00000397601	ENST00000426923		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-3CDS	ENST00000343600	ENST00000311507		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-3CDS	ENST00000343600	ENST00000411416		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-intron	ENST00000343600	ENST00000515389		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000343600	ENST00000509973		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000343600	ENST00000505406		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000343600	ENST00000426923		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-3CDS	ENST00000345429	ENST00000311507		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-3CDS	ENST00000345429	ENST00000411416		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-intron	ENST00000345429	ENST00000515389		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000345429	ENST00000509973		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000345429	ENST00000505406		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000345429	ENST00000426923		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-3CDS	ENST00000376673	ENST00000311507		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-3CDS	ENST00000376673	ENST00000411416		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-intron	ENST00000376673	ENST00000515389		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000376673	ENST00000509973		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000376673	ENST00000505406		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
5UTR-5UTR	ENST00000376673	ENST00000426923		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-3CDS	ENST00000445661	ENST00000311507		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-3CDS	ENST00000445661	ENST00000411416		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-intron	ENST00000445661	ENST00000515389		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-5UTR	ENST00000445661	ENST00000509973		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-5UTR	ENST00000445661	ENST00000505406		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
intron-5UTR	ENST00000445661	ENST00000426923		TCGA	RV	BLCA	TCGA-GU-A767-01A	MBNL2	chr13	97874785	+	PLAC8	chr4	84026173	-
Frame-shit	ENST00000586178	ENST00000264659		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
Frame-shit	ENST00000586178	ENST00000578925		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000586178	ENST00000398579		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000415868	ENST00000264659		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000415868	ENST00000578925		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000415868	ENST00000398579		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
3UTR-3CDS	ENST00000376381	ENST00000264659		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
3UTR-3CDS	ENST00000376381	ENST00000578925		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
3UTR-intron	ENST00000376381	ENST00000398579		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000593259	ENST00000264659		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000593259	ENST00000578925		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000593259	ENST00000398579		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	MBTD1	chr17	49270143	-	SRCIN1	chr17	36735044	-
Frame-shit	ENST00000394126	ENST00000377755		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
Frame-shit	ENST00000394126	ENST00000398486		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
Frame-shit	ENST00000356271	ENST00000377755		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
In-frame	ENST00000356271	ENST00000398486		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
Frame-shit	ENST00000394128	ENST00000377755		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
In-frame	ENST00000394128	ENST00000398486		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
In-frame	ENST00000394127	ENST00000377755		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
Frame-shit	ENST00000394127	ENST00000398486		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
Frame-shit	ENST00000501516	ENST00000377755		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
Frame-shit	ENST00000501516	ENST00000398486		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
5UTR-3CDS	ENST00000479829	ENST00000377755		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
5UTR-3CDS	ENST00000479829	ENST00000398486		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MED24	chr17	38209551	-	KRT40	chr17	39134548	-
5CDS-5UTR	ENST00000219271	ENST00000341529		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	MMP15	chr16	58060416	+	CDH5	chr16	66413222	+
5CDS-5UTR	ENST00000219271	ENST00000563425		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	MMP15	chr16	58060416	+	CDH5	chr16	66413222	+
5CDS-intron	ENST00000219271	ENST00000539168		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	MMP15	chr16	58060416	+	CDH5	chr16	66413222	+
5CDS-intron	ENST00000309212	ENST00000484427		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000309212	ENST00000371764		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000342753	ENST00000484427		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000342753	ENST00000371764		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000445648	ENST00000484427		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000445648	ENST00000371764		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000477278	ENST00000484427		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000477278	ENST00000371764		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	MXRA8	chr1	1288072	-	DDX27	chr20	47849303	+
Frame-shit	ENST00000376279	ENST00000376355		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376279	ENST00000444838		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376279	ENST00000376360		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376279	ENST00000376354		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376279	ENST00000339105		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
Frame-shit	ENST00000376286	ENST00000376355		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376286	ENST00000444838		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376286	ENST00000376360		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376286	ENST00000376354		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376286	ENST00000339105		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
Frame-shit	ENST00000376285	ENST00000376355		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376285	ENST00000444838		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376285	ENST00000376360		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376285	ENST00000376354		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376285	ENST00000339105		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
intron-3CDS	ENST00000485946	ENST00000376355		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000485946	ENST00000444838		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000485946	ENST00000376360		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000485946	ENST00000376354		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000485946	ENST00000339105		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PCCA	chr13	100921037	+	CLYBL	chr13	100543572	+
In-frame	ENST00000320574	ENST00000547776		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
In-frame	ENST00000320574	ENST00000329257		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
In-frame	ENST00000320574	ENST00000547010		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000341752		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000549558		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000550693		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000320574	ENST00000549025		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000320574	ENST00000549493		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000320574	ENST00000547446		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000333732		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000546568		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000332712		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000320574	ENST00000546960		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000320574	ENST00000550833		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
In-frame	ENST00000535270	ENST00000547776		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
In-frame	ENST00000535270	ENST00000329257		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
In-frame	ENST00000535270	ENST00000547010		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000341752		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000549558		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000550693		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000535270	ENST00000549025		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000535270	ENST00000549493		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000535270	ENST00000547446		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000333732		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000546568		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000332712		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-5UTR	ENST00000535270	ENST00000546960		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
5CDS-intron	ENST00000535270	ENST00000550833		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-3CDS	ENST00000434528	ENST00000547776		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-3CDS	ENST00000434528	ENST00000329257		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-3CDS	ENST00000434528	ENST00000547010		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000341752		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000549558		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000550693		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-intron	ENST00000434528	ENST00000549025		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-intron	ENST00000434528	ENST00000549493		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-intron	ENST00000434528	ENST00000547446		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000333732		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000546568		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000332712		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-5UTR	ENST00000434528	ENST00000546960		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
intron-intron	ENST00000434528	ENST00000550833		TCGA	RV	BLCA	TCGA-CF-A27C-01A	POLE	chr12	133263840	-	ANKS1B	chr12	99225914	-
In-frame	ENST00000253925	ENST00000375735		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
In-frame	ENST00000253925	ENST00000334267		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
In-frame	ENST00000253925	ENST00000398093		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
In-frame	ENST00000389547	ENST00000375735		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
In-frame	ENST00000389547	ENST00000334267		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
In-frame	ENST00000389547	ENST00000398093		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
intron-3CDS	ENST00000530548	ENST00000375735		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
intron-3CDS	ENST00000530548	ENST00000334267		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
intron-3CDS	ENST00000530548	ENST00000398093		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	PPFIA1	chr11	70118542	+	DYNC2H1	chr11	102984266	+
3UTR-3CDS	ENST00000524814	ENST00000342907		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
3UTR-3CDS	ENST00000524814	ENST00000393640		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
3UTR-intron	ENST00000524814	ENST00000566097		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
Frame-shit	ENST00000539188	ENST00000342907		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
Frame-shit	ENST00000539188	ENST00000393640		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
5CDS-intron	ENST00000539188	ENST00000566097		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
Frame-shit	ENST00000312629	ENST00000342907		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
Frame-shit	ENST00000312629	ENST00000393640		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
5CDS-intron	ENST00000312629	ENST00000566097		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	RPS6KB2	chr11	67197066	+	ST3GAL2	chr16	70422449	-
In-frame	ENST00000373710	ENST00000262238		TCGA	RV	BLCA	TCGA-E7-A677-01A	SERINC2	chr1	31907524	+	YY1	chr14	100728641	+
intron-3CDS	ENST00000536859	ENST00000262238		TCGA	RV	BLCA	TCGA-E7-A677-01A	SERINC2	chr1	31907524	+	YY1	chr14	100728641	+
Frame-shit	ENST00000373709	ENST00000262238		TCGA	RV	BLCA	TCGA-E7-A677-01A	SERINC2	chr1	31907524	+	YY1	chr14	100728641	+
In-frame	ENST00000536384	ENST00000262238		TCGA	RV	BLCA	TCGA-E7-A677-01A	SERINC2	chr1	31907524	+	YY1	chr14	100728641	+
Frame-shit	ENST00000491976	ENST00000262238		TCGA	RV	BLCA	TCGA-E7-A677-01A	SERINC2	chr1	31907524	+	YY1	chr14	100728641	+
Frame-shit	ENST00000449833	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000449833	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000449833	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000449833	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000449833	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000449833	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
5CDS-intron	ENST00000449833	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000409161	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000409161	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000409161	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000409161	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000409161	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000409161	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
5CDS-intron	ENST00000409161	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000423696	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000423696	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000423696	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000423696	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000423696	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000423696	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
5CDS-intron	ENST00000423696	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000338508	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000338508	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000338508	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000338508	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000338508	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000338508	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
5CDS-intron	ENST00000338508	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000409530	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000409530	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000409530	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000409530	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000409530	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000409530	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-intron	ENST00000409530	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000449116	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000449116	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000449116	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000449116	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000449116	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000449116	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-intron	ENST00000449116	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000357171	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000357171	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000357171	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000357171	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000357171	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000357171	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-intron	ENST00000357171	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000468619	ENST00000355303		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000468619	ENST00000398543		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000468619	ENST00000538023		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000468619	ENST00000316296		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000468619	ENST00000530676		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-3CDS	ENST00000468619	ENST00000531349		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
intron-intron	ENST00000468619	ENST00000525494		TCGA	RV	BLCA	TCGA-XF-AAMQ-01A	SHANK2	chr11	70331419	-	ANO1	chr11	70003053	+
Frame-shit	ENST00000339208	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000346661	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000345615	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000502449	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000591288	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000394378	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000585472	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
intron-3CDS	ENST00000588194	ENST00000264554		TCGA	RV	BLCA	TCGA-XF-A8HC-01A	SYNRG	chr17	35945433	-	SHC2	chr19	425231	-
Frame-shit	ENST00000448507	ENST00000307358		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
Frame-shit	ENST00000448507	ENST00000382512		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
Frame-shit	ENST00000409757	ENST00000307358		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
Frame-shit	ENST00000409757	ENST00000382512		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000410031	ENST00000307358		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000410031	ENST00000382512		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000451522	ENST00000307358		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000451522	ENST00000382512		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000446947	ENST00000307358		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000446947	ENST00000382512		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8284164	+
Frame-shit	ENST00000367879	ENST00000368830		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
5CDS-5UTR	ENST00000367879	ENST00000467306		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
5CDS-5UTR	ENST00000367879	ENST00000368829		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
Frame-shit	ENST00000372212	ENST00000368830		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
5CDS-5UTR	ENST00000372212	ENST00000467306		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
5CDS-5UTR	ENST00000372212	ENST00000368829		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-3CDS	ENST00000462329	ENST00000368830		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-5UTR	ENST00000462329	ENST00000467306		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-5UTR	ENST00000462329	ENST00000368829		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-3CDS	ENST00000469256	ENST00000368830		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-5UTR	ENST00000469256	ENST00000467306		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-5UTR	ENST00000469256	ENST00000368829		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-3CDS	ENST00000470820	ENST00000368830		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-5UTR	ENST00000470820	ENST00000467306		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
intron-5UTR	ENST00000470820	ENST00000368829		TCGA	RV	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	MRPL9	chr1	151734976	-
5UTR-3UTR	ENST00000360647	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000360647	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000360647	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000360647	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000360647	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000468369	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000468369	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000468369	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000468369	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000468369	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000484491	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000484491	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000484491	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000484491	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000484491	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000544464	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000544464	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000544464	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000544464	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000544464	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000492394	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000492394	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000492394	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000492394	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000492394	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000485866	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000485866	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000485866	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000485866	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000485866	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000497929	ENST00000492220		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000497929	ENST00000401000		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000497929	ENST00000539519		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000497929	ENST00000369067		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000497929	ENST00000369068		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNF148	chr3	125050002	-	RPRD2	chr1	150429764	+
intron-3CDS	ENST00000410075	ENST00000409561		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ZNF638	chr2	71558995	+	C2orf78	chr2	74040604	+
5UTR-3CDS	ENST00000377802	ENST00000409561		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ZNF638	chr2	71558995	+	C2orf78	chr2	74040604	+
5UTR-3CDS	ENST00000355812	ENST00000409561		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ZNF638	chr2	71558995	+	C2orf78	chr2	74040604	+
5UTR-3CDS	ENST00000409544	ENST00000409561		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ZNF638	chr2	71558995	+	C2orf78	chr2	74040604	+
5UTR-3CDS	ENST00000264447	ENST00000409561		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ZNF638	chr2	71558995	+	C2orf78	chr2	74040604	+
intron-3CDS	ENST00000409407	ENST00000409561		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ZNF638	chr2	71558995	+	C2orf78	chr2	74040604	+
Frame-shit	ENST00000293217	ENST00000307877		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000293217	ENST00000539137		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000293217	ENST00000355113		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000293217	ENST00000602720		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000293217	ENST00000542536		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000537812	ENST00000307877		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000537812	ENST00000539137		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000537812	ENST00000355113		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000537812	ENST00000602720		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000537812	ENST00000542536		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000301608	ENST00000307877		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000301608	ENST00000539137		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
Frame-shit	ENST00000301608	ENST00000355113		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000301608	ENST00000602720		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000301608	ENST00000542536		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
intron-3CDS	ENST00000591857	ENST00000307877		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
intron-3CDS	ENST00000591857	ENST00000539137		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
intron-3CDS	ENST00000591857	ENST00000355113		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
intron-5UTR	ENST00000591857	ENST00000602720		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
intron-5UTR	ENST00000591857	ENST00000542536		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ACOX1	chr17	73949532	-	SRP68	chr17	74046607	-
5UTR-3CDS	ENST00000357103	ENST00000280665		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
5UTR-3CDS	ENST00000357103	ENST00000397173		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
5UTR-intron	ENST00000357103	ENST00000541700		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
5UTR-intron	ENST00000357103	ENST00000540622		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000544470	ENST00000280665		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000544470	ENST00000397173		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
intron-intron	ENST00000544470	ENST00000541700		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
intron-intron	ENST00000544470	ENST00000540622		TCGA	RV	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800357	+	DCP1B	chr12	2077076	-
In-frame	ENST00000344773	ENST00000496972		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000405222		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000407661		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000406818		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000407038		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000404103		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000407186		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000288642		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000545439		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000344773	ENST00000472690		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
In-frame	ENST00000379624	ENST00000496972		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000405222		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000407661		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000406818		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000407038		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000404103		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000407186		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000288642		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000545439		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379624	ENST00000472690		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
In-frame	ENST00000342045	ENST00000496972		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000405222		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000407661		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000406818		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000407038		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000404103		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000407186		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000288642		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000545439		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000342045	ENST00000472690		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
In-frame	ENST00000379632	ENST00000496972		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000405222		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000407661		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000406818		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000407038		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000404103		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000407186		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000288642		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000545439		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000379632	ENST00000472690		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
In-frame	ENST00000361704	ENST00000496972		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000405222		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000407661		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000406818		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000407038		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000404103		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000407186		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000288642		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000545439		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5CDS-intron	ENST00000361704	ENST00000472690		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-3CDS	ENST00000603461	ENST00000496972		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000405222		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000407661		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000406818		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000407038		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000404103		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000407186		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000288642		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000545439		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
intron-intron	ENST00000603461	ENST00000472690		TCGA	RV	BLCA	TCGA-G2-A2EC-01A	BRE	chr2	28352247	+	DTNB	chr2	25678363	-
5UTR-5UTR	ENST00000299088	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-intron	ENST00000299088	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000299088	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000299088	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000299088	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000299088	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000341470	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-intron	ENST00000341470	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000341470	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000341470	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000341470	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000341470	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397379	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-intron	ENST00000397379	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397379	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397379	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397379	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397379	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000397382	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-intron	ENST00000397382	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000397382	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000397382	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000397382	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000397382	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397377	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-intron	ENST00000397377	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397377	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397377	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397377	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000397377	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000406429	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-intron	ENST00000406429	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000406429	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000406429	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000406429	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
5UTR-5UTR	ENST00000406429	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000557513	ENST00000395159		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-intron	ENST00000557513	ENST00000216463		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000557513	ENST00000555593		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000557513	ENST00000556007		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000557513	ENST00000555061		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000557513	ENST00000555404		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	C14orf93	chr14	23479310	-	TIMM9	chr14	58878689	-
In-frame	ENST00000357674	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000357674	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000357674	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000357674	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000314062	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000314062	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000314062	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000314062	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000346964	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000346964	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000346964	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000346964	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000419354	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000419354	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000419354	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000419354	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000452595	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000452595	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000452595	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-intron	ENST00000452595	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000422288	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000422288	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000422288	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000422288	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000448528	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000448528	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000448528	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000448528	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000443183	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000443183	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000443183	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-intron	ENST00000443183	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000450955	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000450955	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000450955	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000450955	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000392382	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000392382	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
In-frame	ENST00000392382	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
5CDS-intron	ENST00000392382	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000485409	ENST00000595618		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000485409	ENST00000594824		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-3CDS	ENST00000485409	ENST00000397274		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
intron-intron	ENST00000485409	ENST00000593411		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	DLG1	chr3	196921296	-	MYO9B	chr19	17301906	+
Frame-shit	ENST00000366844	ENST00000367455		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366844	ENST00000367454		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366844	ENST00000367451		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
In-frame	ENST00000366844	ENST00000367448		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366844	ENST00000367449		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000366844	ENST00000367452		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000366844	ENST00000530098		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000366844	ENST00000483156		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366843	ENST00000367455		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366843	ENST00000367454		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366843	ENST00000367451		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
In-frame	ENST00000366843	ENST00000367448		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000366843	ENST00000367449		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000366843	ENST00000367452		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000366843	ENST00000530098		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000366843	ENST00000483156		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000284563	ENST00000367455		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000284563	ENST00000367454		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000284563	ENST00000367451		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
In-frame	ENST00000284563	ENST00000367448		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
Frame-shit	ENST00000284563	ENST00000367449		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000284563	ENST00000367452		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000284563	ENST00000530098		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5CDS-5UTR	ENST00000284563	ENST00000483156		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-3CDS	ENST00000391874	ENST00000367455		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-3CDS	ENST00000391874	ENST00000367454		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-3CDS	ENST00000391874	ENST00000367451		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-3CDS	ENST00000391874	ENST00000367448		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-3CDS	ENST00000391874	ENST00000367449		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-5UTR	ENST00000391874	ENST00000367452		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-5UTR	ENST00000391874	ENST00000530098		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
intron-5UTR	ENST00000391874	ENST00000483156		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	ENAH	chr1	225840388	-	UCHL5	chr1	193020947	-
5UTR-3CDS	ENST00000449098	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000449098	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000449098	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000449098	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000449098	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000320084	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000320084	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000320084	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000320084	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000320084	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000336053	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000336053	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000336053	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000336053	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000336053	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000554969	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554969	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554969	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554969	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554969	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000556142	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556142	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556142	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556142	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556142	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000554455	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554455	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554455	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554455	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000554455	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-3CDS	ENST00000430246	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000430246	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000430246	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000430246	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000430246	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000553753	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553753	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553753	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553753	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553753	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000555914	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555914	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555914	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555914	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555914	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000555309	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555309	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555309	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555309	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555309	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000556628	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556628	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556628	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556628	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556628	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000555883	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555883	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555883	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555883	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000555883	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000556513	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556513	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556513	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556513	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000556513	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000557201	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000557201	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000557201	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000557201	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000557201	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000553300	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553300	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553300	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553300	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000553300	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-3CDS	ENST00000556897	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000556897	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000556897	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000556897	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
intron-intron	ENST00000556897	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-3CDS	ENST00000420743	ENST00000216277		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000420743	ENST00000557320		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000420743	ENST00000554130		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000420743	ENST00000557471		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000420743	ENST00000392990		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21737457	-	PAPOLA	chr14	97022184	+
Frame-shit	ENST00000520810	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000520810	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000520810	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000520810	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000520810	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000520810	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000416505	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000416505	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000416505	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000416505	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000416505	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000416505	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000519735	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000519735	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000519735	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000519735	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000519735	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000519735	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000520835	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000520835	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000520835	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000520835	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000520835	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000520835	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000379708	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000379708	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000379708	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000379708	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000379708	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000379708	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000518983	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000518983	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000518983	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000518983	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000518983	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000518983	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000522147	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000522147	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000522147	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000522147	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000522147	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000522147	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000522785	ENST00000287272		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000522785	ENST00000453357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000522785	ENST00000404895		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000522785	ENST00000420357		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000522785	ENST00000416672		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000522785	ENST00000449677		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	IKBKB	chr8	42129723	+	UNC5D	chr8	35406810	+
5CDS-5UTR	ENST00000283249	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000283249	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000283249	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000283249	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000283249	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000283249	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000485635	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000485635	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000485635	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000485635	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000485635	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000485635	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000428609	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000428609	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000428609	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000428609	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000428609	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000428609	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409967	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409967	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409967	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409967	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409967	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409967	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409872	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409872	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409872	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409872	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409872	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5CDS-5UTR	ENST00000409872	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-A9R1-01A	ITGB6	chr2	160998493	-	RBMS1	chr2	161143595	-
5UTR-3CDS	ENST00000513024	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
5UTR-3CDS	ENST00000513024	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
5UTR-3CDS	ENST00000509638	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
5UTR-3CDS	ENST00000509638	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000508501	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000508501	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000512946	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000512946	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000313860	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000313860	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000512632	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000512632	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000512820	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
In-frame	ENST00000512820	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000503057	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000503057	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000511496	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000511496	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000514096	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000514096	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000509277	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000509277	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000396595	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000396595	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000381753	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000381753	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000509454	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000509454	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000515785	ENST00000226432		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
intron-3CDS	ENST00000515785	ENST00000513409		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	LIMCH1	chr4	41526495	+	CWH43	chr4	49030646	+
Frame-shit	ENST00000359015	ENST00000421351		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MAP3K5	chr6	137112848	-	PERP	chr6	138417631	-
intron-3CDS	ENST00000355845	ENST00000421351		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MAP3K5	chr6	137112848	-	PERP	chr6	138417631	-
intron-3CDS	ENST00000463140	ENST00000421351		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MAP3K5	chr6	137112848	-	PERP	chr6	138417631	-
In-frame	ENST00000281928	ENST00000547525		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5CDS-intron	ENST00000281928	ENST00000550529		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5CDS-intron	ENST00000281928	ENST00000261400		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5CDS-intron	ENST00000281928	ENST00000332082		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5CDS-intron	ENST00000281928	ENST00000549903		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5UTR-3CDS	ENST00000551197	ENST00000547525		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5UTR-intron	ENST00000551197	ENST00000550529		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5UTR-intron	ENST00000551197	ENST00000261400		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5UTR-intron	ENST00000551197	ENST00000332082		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5UTR-intron	ENST00000551197	ENST00000549903		TCGA	RV	BLCA	TCGA-ZF-A9RM-01A	MED13L	chr12	116675273	-	WSCD2	chr12	108618516	+
5UTR-5UTR	ENST00000349945	ENST00000338482		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000349945	ENST00000572450		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000349945	ENST00000539698		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000432919	ENST00000338482		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000432919	ENST00000572450		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000432919	ENST00000539698		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000354436	ENST00000338482		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000354436	ENST00000572450		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000354436	ENST00000539698		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000567239	ENST00000338482		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000567239	ENST00000572450		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000567239	ENST00000539698		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000393742	ENST00000338482		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000393742	ENST00000572450		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000393742	ENST00000539698		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000566899	ENST00000338482		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000566899	ENST00000572450		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
5UTR-5UTR	ENST00000566899	ENST00000539698		TCGA	RV	BLCA	TCGA-GC-A3YS-01A	NFAT5	chr16	69600277	+	CHST4	chr16	71570563	+
In-frame	ENST00000262241	ENST00000359520		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	RCOR1	chr14	103180954	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000262241	ENST00000561228		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	RCOR1	chr14	103180954	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000262241	ENST00000558678		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	RCOR1	chr14	103180954	+	TECPR2	chr14	102963316	+
In-frame	ENST00000570597	ENST00000359520		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	RCOR1	chr14	103180954	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000570597	ENST00000561228		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	RCOR1	chr14	103180954	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000570597	ENST00000558678		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	RCOR1	chr14	103180954	+	TECPR2	chr14	102963316	+
5CDS-5UTR	ENST00000598913	ENST00000509137		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000598913	ENST00000292853		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000598913	ENST00000600828		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000314471	ENST00000509137		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000314471	ENST00000292853		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000314471	ENST00000600828		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
3UTR-5UTR	ENST00000594204	ENST00000509137		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
3UTR-5UTR	ENST00000594204	ENST00000292853		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
3UTR-5UTR	ENST00000594204	ENST00000600828		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000596368	ENST00000509137		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000596368	ENST00000292853		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-5UTR	ENST00000596368	ENST00000600828		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	SAMD4B	chr19	39847729	+	FBXO27	chr19	39522893	-
5CDS-3UTR	ENST00000314571	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
5CDS-3UTR	ENST00000383797	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
5CDS-3UTR	ENST00000454502	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
5CDS-3UTR	ENST00000402228	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
5CDS-3UTR	ENST00000444864	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
5CDS-3UTR	ENST00000284995	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
5CDS-3UTR	ENST00000415684	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
intron-3UTR	ENST00000475595	ENST00000432424		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	TSEN2	chr3	12538053	+	SYN2	chr3	12224812	+
Frame-shit	ENST00000393792	ENST00000519643		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	UBTD2	chr5	171710600	-	SH3PXD2B	chr5	171752384	-
5CDS-intron	ENST00000393792	ENST00000311601		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	UBTD2	chr5	171710600	-	SH3PXD2B	chr5	171752384	-
5CDS-intron	ENST00000393792	ENST00000523651		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	UBTD2	chr5	171710600	-	SH3PXD2B	chr5	171752384	-
Frame-shit	ENST00000219689	ENST00000321728		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
Frame-shit	ENST00000219689	ENST00000303531		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000219689	ENST00000482000		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000219689	ENST00000498058		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000567975	ENST00000321728		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000567975	ENST00000303531		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
intron-intron	ENST00000567975	ENST00000482000		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
intron-intron	ENST00000567975	ENST00000498058		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	USP31	chr16	23159959	-	PRKCB	chr16	23999829	+
In-frame	ENST00000247706	ENST00000254654		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	ABHD8	chr19	17411665	-	ILKAP	chr2	239079665	-
5CDS-intron	ENST00000247706	ENST00000490837		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	ABHD8	chr19	17411665	-	ILKAP	chr2	239079665	-
intron-3CDS	ENST00000534328	ENST00000397397		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000534328	ENST00000397411		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000397396		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000397408		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000397406		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000409543		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000525201		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000397404		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000346501		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000534328	ENST00000409531		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000332231	ENST00000397397		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000332231	ENST00000397411		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000397396		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000397408		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000397406		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000409543		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000525201		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000397404		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000346501		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000332231	ENST00000409531		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000448903	ENST00000397397		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000448903	ENST00000397411		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000397396		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000397408		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000397406		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000409543		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000525201		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000397404		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000346501		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000448903	ENST00000409531		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000525891	ENST00000397397		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-3CDS	ENST00000525891	ENST00000397411		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000397396		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000397408		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000397406		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000409543		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000525201		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000397404		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000346501		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
intron-5UTR	ENST00000525891	ENST00000409531		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	946963	+	TSPAN4	chr11	862550	+
In-frame	ENST00000323116	ENST00000355029		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
5CDS-5UTR	ENST00000323116	ENST00000542715		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
5CDS-5UTR	ENST00000323116	ENST00000380359		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
5CDS-intron	ENST00000323116	ENST00000484741		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-3CDS	ENST00000493826	ENST00000355029		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-5UTR	ENST00000493826	ENST00000542715		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-5UTR	ENST00000493826	ENST00000380359		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-intron	ENST00000493826	ENST00000484741		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-3CDS	ENST00000482794	ENST00000355029		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-5UTR	ENST00000482794	ENST00000542715		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-5UTR	ENST00000482794	ENST00000380359		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
intron-intron	ENST00000482794	ENST00000484741		TCGA	RV	BLCA	TCGA-XF-AAN4-01A	ATP11B	chr3	182616560	+	NET1	chr10	5493793	+
3UTR-3CDS	ENST00000375980	ENST00000292174		TCGA	RV	BLCA	TCGA-HQ-A5ND-01A	EFHD2	chr1	15756826	+	CXCR5	chr11	118754475	+
5UTR-3CDS	ENST00000371253	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	GPR110	chr6	47009927	-	TNFRSF21	chr6	47202634	-
intron-3CDS	ENST00000449332	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	GPR110	chr6	47009927	-	TNFRSF21	chr6	47202634	-
intron-3CDS	ENST00000283297	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	GPR110	chr6	47009927	-	TNFRSF21	chr6	47202634	-
5UTR-3CDS	ENST00000371243	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	GPR110	chr6	47009927	-	TNFRSF21	chr6	47202634	-
3UTR-3CDS	ENST00000398606	ENST00000350638		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
3UTR-3CDS	ENST00000398606	ENST00000379163		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
3UTR-3CDS	ENST00000398606	ENST00000395934		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
Frame-shit	ENST00000398603	ENST00000350638		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
Frame-shit	ENST00000398603	ENST00000379163		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
Frame-shit	ENST00000398603	ENST00000395934		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
intron-3CDS	ENST00000498765	ENST00000350638		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
intron-3CDS	ENST00000498765	ENST00000379163		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
intron-3CDS	ENST00000498765	ENST00000395934		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354121	+	ELP4	chr11	31653764	+
5UTR-3CDS	ENST00000409843	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409843	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409843	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409843	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409843	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-intron	ENST00000409843	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409830	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409830	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409830	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409830	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409830	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-intron	ENST00000409830	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000410051	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000410051	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000410051	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000410051	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000410051	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-intron	ENST00000410051	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
3UTR-3CDS	ENST00000479019	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
3UTR-3CDS	ENST00000479019	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
3UTR-3CDS	ENST00000479019	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
3UTR-3CDS	ENST00000479019	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
3UTR-3CDS	ENST00000479019	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
3UTR-intron	ENST00000479019	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409805	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409805	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409805	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409805	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-3CDS	ENST00000409805	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
5UTR-intron	ENST00000409805	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000359135	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000359135	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000359135	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000359135	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000359135	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-intron	ENST00000359135	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409580	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409580	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409580	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409580	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409580	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-intron	ENST00000409580	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409637	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409637	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409637	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409637	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409637	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-intron	ENST00000409637	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409609	ENST00000430004		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409609	ENST00000392296		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409609	ENST00000321801		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409609	ENST00000282278		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-3CDS	ENST00000409609	ENST00000433157		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
intron-intron	ENST00000409609	ENST00000486206		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GULP1	chr2	189156893	+	BOLL	chr2	198607883	-
In-frame	ENST00000346872	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000346872	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000346872	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000394189	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000394189	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000394189	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000439167	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000439167	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000439167	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000535189	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000535189	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000535189	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377944	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377944	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000377944	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377945	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377945	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000377945	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377952	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377952	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000377952	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377958	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000377958	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000377958	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000346243	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000346243	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000346243	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000350532	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000350532	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000350532	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000351680	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000351680	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000351680	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000467757	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000467757	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000467757	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000439016	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000439016	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000439016	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000583368	ENST00000264659		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000583368	ENST00000578925		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000583368	ENST00000398579		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000378814	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378814	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378814	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378814	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000259711	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000259711	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000259711	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000259711	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378843	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378843	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378843	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378843	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378826	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378826	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378826	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378826	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378816	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378816	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378816	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000378816	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000502704	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000502704	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000502704	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
5CDS-intron	ENST00000502704	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
intron-intron	ENST00000503342	ENST00000546309		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
intron-intron	ENST00000503342	ENST00000397244		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
intron-intron	ENST00000503342	ENST00000388870		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
intron-intron	ENST00000503342	ENST00000297792		TCGA	RV	BLCA	TCGA-4Z-AA80-01A	KIF13A	chr6	17987285	-	KDM1B	chr6	18166498	+
In-frame	ENST00000381125	ENST00000436291		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
In-frame	ENST00000381125	ENST00000595124		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
In-frame	ENST00000381125	ENST00000595356		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
In-frame	ENST00000381125	ENST00000403380		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
In-frame	ENST00000381125	ENST00000312439		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
In-frame	ENST00000381125	ENST00000244296		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
5CDS-intron	ENST00000381125	ENST00000601073		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381075	ENST00000436291		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381075	ENST00000595124		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381075	ENST00000595356		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381075	ENST00000403380		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381075	ENST00000312439		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381075	ENST00000244296		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-intron	ENST00000381075	ENST00000601073		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000421751	ENST00000436291		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000421751	ENST00000595124		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000421751	ENST00000595356		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000421751	ENST00000403380		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000421751	ENST00000312439		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000421751	ENST00000244296		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-intron	ENST00000421751	ENST00000601073		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381072	ENST00000436291		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381072	ENST00000595124		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381072	ENST00000595356		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381072	ENST00000403380		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381072	ENST00000312439		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-3CDS	ENST00000381072	ENST00000244296		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
intron-intron	ENST00000381072	ENST00000601073		TCGA	RV	BLCA	TCGA-FD-A3B3-01A	PFKP	chr10	3109899	+	PSG1	chr19	43372507	-
Frame-shit	ENST00000261712	ENST00000376650		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PSMD11	chr17	30781637	+	DPRX	chr19	54137785	+
Frame-shit	ENST00000457654	ENST00000376650		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	PSMD11	chr17	30781637	+	DPRX	chr19	54137785	+
5UTR-3CDS	ENST00000542569	ENST00000539909		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000542569	ENST00000286621		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000542569	ENST00000372734		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000542569	ENST00000541550		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-intron	ENST00000542569	ENST00000467840		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000372687	ENST00000539909		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000372687	ENST00000286621		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000372687	ENST00000372734		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000372687	ENST00000541550		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5UTR-intron	ENST00000372687	ENST00000467840		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
Frame-shit	ENST00000372690	ENST00000539909		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
In-frame	ENST00000372690	ENST00000286621		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
In-frame	ENST00000372690	ENST00000372734		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
In-frame	ENST00000372690	ENST00000541550		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
5CDS-intron	ENST00000372690	ENST00000467840		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	SAMD8	chr10	76871480	+	ADK	chr10	76468079	+
Frame-shit	ENST00000307877	ENST00000448471		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
In-frame	ENST00000307877	ENST00000425876		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
Frame-shit	ENST00000539137	ENST00000448471		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
In-frame	ENST00000539137	ENST00000425876		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
In-frame	ENST00000355113	ENST00000448471		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
Frame-shit	ENST00000355113	ENST00000425876		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
Frame-shit	ENST00000602720	ENST00000448471		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
In-frame	ENST00000602720	ENST00000425876		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
5UTR-3CDS	ENST00000542536	ENST00000448471		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
5UTR-3CDS	ENST00000542536	ENST00000425876		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	SRP68	chr17	74042119	-	CDK3	chr17	74001379	+
5UTR-3CDS	ENST00000337554	ENST00000006251		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000337554	ENST00000403581		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000337554	ENST00000336985		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-intron	ENST00000337554	ENST00000477331		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000396265	ENST00000006251		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000396265	ENST00000403581		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000396265	ENST00000336985		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-intron	ENST00000396265	ENST00000477331		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000583777	ENST00000006251		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000583777	ENST00000403581		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-3CDS	ENST00000583777	ENST00000336985		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
5UTR-intron	ENST00000583777	ENST00000477331		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
intron-3CDS	ENST00000329563	ENST00000006251		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
intron-3CDS	ENST00000329563	ENST00000403581		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
intron-3CDS	ENST00000329563	ENST00000336985		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
intron-intron	ENST00000329563	ENST00000477331		TCGA	RV	BLCA	TCGA-XF-AAMW-01A	TSPO	chr22	43547610	+	PRR5	chr22	45121124	+
In-frame	ENST00000398571	ENST00000404929		TCGA	RV	BLCA	TCGA-BL-A13J-01A	USP34	chr2	61486846	-	FAM161A	chr2	62054393	-
In-frame	ENST00000398571	ENST00000405894		TCGA	RV	BLCA	TCGA-BL-A13J-01A	USP34	chr2	61486846	-	FAM161A	chr2	62054393	-
intron-3CDS	ENST00000472689	ENST00000404929		TCGA	RV	BLCA	TCGA-BL-A13J-01A	USP34	chr2	61486846	-	FAM161A	chr2	62054393	-
intron-3CDS	ENST00000472689	ENST00000405894		TCGA	RV	BLCA	TCGA-BL-A13J-01A	USP34	chr2	61486846	-	FAM161A	chr2	62054393	-
5CDS-5UTR	ENST00000273038	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000273038	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000273038	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000273038	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000273038	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000273038	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430365	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430365	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430365	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000430365	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000430365	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430365	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000404339	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000404339	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000404339	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000404339	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000404339	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000404339	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000480288	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000480288	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000413604	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000413604	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000413604	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000413604	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000413604	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000413604	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000451674	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000451674	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000314124		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000435575		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000435218		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000424529	ENST00000476331		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000424529	ENST00000431022		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000264728		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	VGLL4	chr3	11643307	-	TMEM40	chr3	12791339	-
In-frame	ENST00000395474	ENST00000331366		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
Frame-shit	ENST00000395474	ENST00000538596		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000395474	ENST00000546603		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000395474	ENST00000360449		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
3UTR-3CDS	ENST00000489684	ENST00000331366		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
3UTR-3CDS	ENST00000489684	ENST00000538596		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
3UTR-5UTR	ENST00000489684	ENST00000546603		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
3UTR-5UTR	ENST00000489684	ENST00000360449		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
In-frame	ENST00000608424	ENST00000331366		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
Frame-shit	ENST00000608424	ENST00000538596		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000608424	ENST00000546603		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000608424	ENST00000360449		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
In-frame	ENST00000415265	ENST00000331366		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
Frame-shit	ENST00000415265	ENST00000538596		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000415265	ENST00000546603		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000415265	ENST00000360449		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
intron-3CDS	ENST00000448293	ENST00000331366		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
intron-3CDS	ENST00000448293	ENST00000538596		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
intron-5UTR	ENST00000448293	ENST00000546603		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
intron-5UTR	ENST00000448293	ENST00000360449		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	WDR6	chr3	49044964	+	CPNE8	chr12	39047872	-
Frame-shit	ENST00000355303	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000355303	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000398543	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000398543	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000538023	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000538023	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000316296	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000316296	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000530676	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000530676	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000531349	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000531349	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
intron-3CDS	ENST00000525494	ENST00000282251		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
intron-3CDS	ENST00000525494	ENST00000433523		TCGA	RV	BLCA	TCGA-CF-A8HX-01A	ANO1	chr11	69978185	+	CWF19L2	chr11	107313775	-
Frame-shit	ENST00000305877	ENST00000412327		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000305877	ENST00000335025		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000305877	ENST00000492445		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000305877	ENST00000398831		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000305877	ENST00000406385		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000305877	ENST00000456792		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
5CDS-3UTR	ENST00000305877	ENST00000446951		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000359540	ENST00000412327		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000359540	ENST00000335025		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000359540	ENST00000492445		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000359540	ENST00000398831		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000359540	ENST00000406385		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
Frame-shit	ENST00000359540	ENST00000456792		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
5CDS-3UTR	ENST00000359540	ENST00000446951		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000398512	ENST00000412327		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000398512	ENST00000335025		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000398512	ENST00000492445		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000398512	ENST00000398831		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000398512	ENST00000406385		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000398512	ENST00000456792		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3UTR	ENST00000398512	ENST00000446951		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000436990	ENST00000412327		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000436990	ENST00000335025		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000436990	ENST00000492445		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000436990	ENST00000398831		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000436990	ENST00000406385		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3CDS	ENST00000436990	ENST00000456792		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
intron-3UTR	ENST00000436990	ENST00000446951		TCGA	RV	BLCA	TCGA-FD-A43N-01A	BCR	chr22	23615961	+	PPIL2	chr22	22048105	+
5CDS-intron	ENST00000389857	ENST00000298858		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000520328		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000256324		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000521077		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000518665		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000518868		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000519019		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000523816		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000525393		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000428926		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000522322		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000523771		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000412671		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000517877		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
5CDS-intron	ENST00000389857	ENST00000523576		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000298858		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000520328		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000256324		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000521077		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000518665		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000518868		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000519019		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000523816		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000525393		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000428926		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000522322		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000523771		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000412671		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000517877		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000331194	ENST00000523576		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000298858		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000520328		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000256324		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000521077		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000518665		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000518868		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000519019		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000523816		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000525393		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000428926		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000522322		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000523771		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000412671		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000517877		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000389856	ENST00000523576		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000298858		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000520328		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000256324		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000521077		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000518665		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000518868		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000519019		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000523816		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000525393		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000428926		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000522322		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000523771		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000412671		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000517877		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000553403	ENST00000523576		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000298858		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000520328		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000256324		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000521077		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000518665		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000518868		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000519019		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000523816		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000525393		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000428926		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000522322		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000523771		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000412671		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000517877		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
intron-intron	ENST00000554165	ENST00000523576		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	CCDC88C	chr14	91760517	-	C14orf159	chr14	91681749	+
In-frame	ENST00000530927	ENST00000259873		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000506373		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-3UTR	ENST00000530927	ENST00000472229		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000454427		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000477010		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000437247		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000430402		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000489289		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000418070		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000426945		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000468755		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000412843		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000327800		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000469397		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000400594		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000451032		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000493769		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000440992		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000412451		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000428224		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000530927	ENST00000472444		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
In-frame	ENST00000380815	ENST00000259873		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000506373		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-3UTR	ENST00000380815	ENST00000472229		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000454427		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000477010		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000437247		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000430402		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000489289		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000418070		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000426945		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000468755		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000412843		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000327800		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000469397		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000400594		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000451032		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000493769		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000440992		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000412451		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000428224		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
5CDS-intron	ENST00000380815	ENST00000472444		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-3CDS	ENST00000467288	ENST00000259873		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000506373		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-3UTR	ENST00000467288	ENST00000472229		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000454427		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000477010		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000437247		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000430402		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000489289		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000418070		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000426945		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000468755		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000412843		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000327800		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000469397		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000400594		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000451032		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000493769		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000440992		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000412451		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000428224		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
intron-intron	ENST00000467288	ENST00000472444		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30590609	+
Frame-shit	ENST00000374864	ENST00000370283		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000374864	ENST00000547204		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000374864	ENST00000519604		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000374864	ENST00000519273		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000374864	ENST00000370275		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000374864	ENST00000353546		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
5CDS-intron	ENST00000374864	ENST00000518794		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000535650	ENST00000370283		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000535650	ENST00000547204		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000535650	ENST00000519604		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000535650	ENST00000519273		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000535650	ENST00000370275		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000535650	ENST00000353546		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
5CDS-intron	ENST00000535650	ENST00000518794		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000262650	ENST00000370283		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000262650	ENST00000547204		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000262650	ENST00000519604		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000262650	ENST00000519273		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000262650	ENST00000370275		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
Frame-shit	ENST00000262650	ENST00000353546		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
5CDS-intron	ENST00000262650	ENST00000518794		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000483727	ENST00000370283		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000483727	ENST00000547204		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000483727	ENST00000519604		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000483727	ENST00000519273		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000483727	ENST00000370275		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000483727	ENST00000353546		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-intron	ENST00000483727	ENST00000518794		TCGA	RV	BLCA	TCGA-UY-A78N-01A	ITCH	chr20	33069011	+	ARFGAP1	chr20	61914171	+
intron-3CDS	ENST00000377093	ENST00000356175		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-3CDS	ENST00000377093	ENST00000358273		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377093	ENST00000431387		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377093	ENST00000581113		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377093	ENST00000417592		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377093	ENST00000444181		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
In-frame	ENST00000263934	ENST00000356175		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
In-frame	ENST00000263934	ENST00000358273		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000263934	ENST00000431387		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000263934	ENST00000581113		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000263934	ENST00000417592		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000263934	ENST00000444181		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
In-frame	ENST00000377086	ENST00000356175		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
In-frame	ENST00000377086	ENST00000358273		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377086	ENST00000431387		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377086	ENST00000581113		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377086	ENST00000417592		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377086	ENST00000444181		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-3CDS	ENST00000377083	ENST00000356175		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-3CDS	ENST00000377083	ENST00000358273		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377083	ENST00000431387		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377083	ENST00000581113		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377083	ENST00000417592		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000377083	ENST00000444181		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
In-frame	ENST00000377081	ENST00000356175		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
In-frame	ENST00000377081	ENST00000358273		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377081	ENST00000431387		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377081	ENST00000581113		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377081	ENST00000417592		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
5CDS-intron	ENST00000377081	ENST00000444181		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-3CDS	ENST00000465635	ENST00000356175		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-3CDS	ENST00000465635	ENST00000358273		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000465635	ENST00000431387		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000465635	ENST00000581113		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000465635	ENST00000417592		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
intron-intron	ENST00000465635	ENST00000444181		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	KIF1B	chr1	10403345	+	NF1	chr17	29683478	+
Frame-shit	ENST00000396556	ENST00000282541		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	OSBPL10	chr3	31917925	-	GPD1L	chr3	32207306	+
Frame-shit	ENST00000438237	ENST00000282541		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	OSBPL10	chr3	31917925	-	GPD1L	chr3	32207306	+
intron-3CDS	ENST00000467647	ENST00000282541		TCGA	RV	BLCA	TCGA-GV-A3JW-01A	OSBPL10	chr3	31917925	-	GPD1L	chr3	32207306	+
Frame-shit	ENST00000328195	ENST00000397901		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	PROSC	chr8	37623873	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000328195	ENST00000253475		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	PROSC	chr8	37623873	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000328195	ENST00000535997		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	PROSC	chr8	37623873	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000328195	ENST00000550102		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	PROSC	chr8	37623873	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000328195	ENST00000547614		TCGA	RV	BLCA	TCGA-XF-A9SK-01A	PROSC	chr8	37623873	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000493196	ENST00000330714		TCGA	RV	BLCA	TCGA-K4-A5RI-01A	RWDD2B	chr21	30391532	-	MX2	chr21	42762492	+
5CDS-intron	ENST00000493196	ENST00000543692		TCGA	RV	BLCA	TCGA-K4-A5RI-01A	RWDD2B	chr21	30391532	-	MX2	chr21	42762492	+
5CDS-intron	ENST00000493196	ENST00000496774		TCGA	RV	BLCA	TCGA-K4-A5RI-01A	RWDD2B	chr21	30391532	-	MX2	chr21	42762492	+
5UTR-3CDS	ENST00000486719	ENST00000330714		TCGA	RV	BLCA	TCGA-K4-A5RI-01A	RWDD2B	chr21	30391532	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000486719	ENST00000543692		TCGA	RV	BLCA	TCGA-K4-A5RI-01A	RWDD2B	chr21	30391532	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000486719	ENST00000496774		TCGA	RV	BLCA	TCGA-K4-A5RI-01A	RWDD2B	chr21	30391532	-	MX2	chr21	42762492	+
5CDS-5UTR	ENST00000374232	ENST00000454782		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SNX30	chr9	115600977	+	PXT1	chr6	36393868	-
intron-5UTR	ENST00000604751	ENST00000454782		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	SNX30	chr9	115600977	+	PXT1	chr6	36393868	-
In-frame	ENST00000361905	ENST00000334956		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000361905	ENST00000539723		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000361905	ENST00000550549		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000361905	ENST00000538608		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000361905	ENST00000526746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
In-frame	ENST00000527636	ENST00000334956		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000527636	ENST00000539723		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000527636	ENST00000550549		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000527636	ENST00000538608		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000527636	ENST00000526746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
In-frame	ENST00000527575	ENST00000334956		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000527575	ENST00000539723		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000527575	ENST00000550549		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000527575	ENST00000538608		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000527575	ENST00000526746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
In-frame	ENST00000334310	ENST00000334956		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000334310	ENST00000539723		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000334310	ENST00000550549		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000334310	ENST00000538608		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000334310	ENST00000526746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
In-frame	ENST00000361985	ENST00000334956		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000361985	ENST00000539723		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
Frame-shit	ENST00000361985	ENST00000550549		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000361985	ENST00000538608		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
5CDS-intron	ENST00000361985	ENST00000526746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
intron-3CDS	ENST00000526600	ENST00000334956		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
intron-3CDS	ENST00000526600	ENST00000539723		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
intron-3CDS	ENST00000526600	ENST00000550549		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
intron-intron	ENST00000526600	ENST00000538608		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
intron-intron	ENST00000526600	ENST00000526746		TCGA	RV	BLCA	TCGA-E7-A85H-01A	TEAD1	chr11	12785981	+	PARVA	chr11	12549396	+
intron-intron	ENST00000548589	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
In-frame	ENST00000283206	ENST00000295408		TCGA	RV	BLCA	TCGA-XF-A9SU-01A	TMEM87B	chr2	112834859	+	MERTK	chr2	112765960	+
In-frame	ENST00000283206	ENST00000421804		TCGA	RV	BLCA	TCGA-XF-A9SU-01A	TMEM87B	chr2	112834859	+	MERTK	chr2	112765960	+
In-frame	ENST00000283206	ENST00000409780		TCGA	RV	BLCA	TCGA-XF-A9SU-01A	TMEM87B	chr2	112834859	+	MERTK	chr2	112765960	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	RV	BLCA	TCGA-XF-A9SU-01A	TMEM87B	chr2	112834859	+	MERTK	chr2	112765960	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	RV	BLCA	TCGA-XF-A9SU-01A	TMEM87B	chr2	112834859	+	MERTK	chr2	112765960	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	RV	BLCA	TCGA-XF-A9SU-01A	TMEM87B	chr2	112834859	+	MERTK	chr2	112765960	+
In-frame	ENST00000395146	ENST00000427191		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
In-frame	ENST00000395146	ENST00000436978		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000395146	ENST00000502971		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000395146	ENST00000411767		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000395146	ENST00000316707		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000395146	ENST00000511467		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
In-frame	ENST00000307808	ENST00000427191		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
In-frame	ENST00000307808	ENST00000436978		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000307808	ENST00000502971		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000307808	ENST00000411767		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000307808	ENST00000316707		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000307808	ENST00000511467		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
In-frame	ENST00000544085	ENST00000427191		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
In-frame	ENST00000544085	ENST00000436978		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000544085	ENST00000502971		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000544085	ENST00000411767		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000544085	ENST00000316707		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
5CDS-intron	ENST00000544085	ENST00000511467		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
intron-3CDS	ENST00000511996	ENST00000427191		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
intron-3CDS	ENST00000511996	ENST00000436978		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
intron-intron	ENST00000511996	ENST00000502971		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
intron-intron	ENST00000511996	ENST00000411767		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
intron-intron	ENST00000511996	ENST00000316707		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
intron-intron	ENST00000511996	ENST00000511467		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	AFF1	chr4	88046295	+	PTPN13	chr4	87720254	+
In-frame	ENST00000256496	ENST00000302640		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000354582		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000423119		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000456211		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000357086		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000256496	ENST00000544951		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000256496	ENST00000443694		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000256496	ENST00000463980		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000302640		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000354582		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000423119		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000456211		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000357086		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000419534	ENST00000544951		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000419534	ENST00000443694		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000419534	ENST00000463980		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000302640		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000354582		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000423119		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000456211		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000357086		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-intron	ENST00000468010	ENST00000544951		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-intron	ENST00000468010	ENST00000443694		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-intron	ENST00000468010	ENST00000463980		TCGA	RV	BLCA	TCGA-K4-A83P-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5UTR-3CDS	ENST00000368073	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368073	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3UTR	ENST00000368073	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000326837	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3UTR	ENST00000326837	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000368074	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3UTR	ENST00000368074	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000608310	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3UTR	ENST00000608310	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3CDS	ENST00000556710	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
intron-3UTR	ENST00000556710	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000610139	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3UTR	ENST00000610139	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000236938		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000367949		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000367959		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000540926		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000546024		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000350710		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000540521		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000367957		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000349527		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000294796		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000309691		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000367953		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3CDS	ENST00000475733	ENST00000367950		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
5UTR-3UTR	ENST00000475733	ENST00000470841		TCGA	RV	BLCA	TCGA-ZF-AA5P-01A	DCAF8	chr1	160231075	-	FCRLA	chr1	161682875	+
Frame-shit	ENST00000264093	ENST00000339566		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000264093	ENST00000409707		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000264093	ENST00000394073		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000264093	ENST00000394070		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
5CDS-intron	ENST00000264093	ENST00000536064		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
5CDS-3UTR	ENST00000264093	ENST00000486458		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000348222	ENST00000339566		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000348222	ENST00000409707		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000348222	ENST00000394073		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000348222	ENST00000394070		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
5CDS-intron	ENST00000348222	ENST00000536064		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
5CDS-3UTR	ENST00000348222	ENST00000486458		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
3UTR-3CDS	ENST00000462685	ENST00000339566		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
3UTR-3CDS	ENST00000462685	ENST00000409707		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
3UTR-3CDS	ENST00000462685	ENST00000394073		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
3UTR-3CDS	ENST00000462685	ENST00000394070		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
3UTR-intron	ENST00000462685	ENST00000536064		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
3UTR-3UTR	ENST00000462685	ENST00000486458		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000356837	ENST00000339566		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000356837	ENST00000409707		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000356837	ENST00000394073		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
Frame-shit	ENST00000356837	ENST00000394070		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
5CDS-intron	ENST00000356837	ENST00000536064		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
5CDS-3UTR	ENST00000356837	ENST00000486458		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DGUOK	chr2	74154179	+	STAMBP	chr2	74086381	+
In-frame	ENST00000263253	ENST00000253669		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	EP300	chr22	41513825	+	HAUS8	chr19	17166812	-
In-frame	ENST00000263253	ENST00000448593		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	EP300	chr22	41513825	+	HAUS8	chr19	17166812	-
In-frame	ENST00000263253	ENST00000593360		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	EP300	chr22	41513825	+	HAUS8	chr19	17166812	-
5UTR-3CDS	ENST00000519824	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000522746	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000523509	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000401979	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000519110	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
intron-3CDS	ENST00000522250	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000517654	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000519540	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000522941	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
5UTR-3CDS	ENST00000518879	ENST00000306185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	FAM49B	chr8	130915558	-	MRPL13	chr8	121455548	-
In-frame	ENST00000266754	ENST00000281928		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
5CDS-intron	ENST00000266754	ENST00000551197		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
In-frame	ENST00000547754	ENST00000281928		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
5CDS-intron	ENST00000547754	ENST00000551197		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
intron-3CDS	ENST00000547739	ENST00000281928		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
intron-intron	ENST00000547739	ENST00000551197		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
In-frame	ENST00000539410	ENST00000281928		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
5CDS-intron	ENST00000539410	ENST00000551197		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
5UTR-3CDS	ENST00000537247	ENST00000281928		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
5UTR-intron	ENST00000537247	ENST00000551197		TCGA	RV	BLCA	TCGA-FD-A6TB-01A	GAS2L3	chr12	100995531	+	MED13L	chr12	116404048	-
5CDS-5UTR	ENST00000170447	ENST00000397010		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000170447	ENST00000309576		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000397015		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000170447	ENST00000397012		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000170447	ENST00000397026		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000397000		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000539812		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000170447	ENST00000287820		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000397010		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000309576		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000397015		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000397012		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000411987	ENST00000397026		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000397000		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000539812		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000411987	ENST00000287820		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000397010		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000309576		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000397015		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000397012		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-5UTR	ENST00000448482	ENST00000397026		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000397000		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000539812		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
5CDS-intron	ENST00000448482	ENST00000287820		TCGA	RV	BLCA	TCGA-UY-A78K-01A	MKRN2	chr3	12598675	+	PPARG	chr3	12353879	+
Frame-shit	ENST00000394579	ENST00000311812		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000394579	ENST00000428383		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000394579	ENST00000519521		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
Frame-shit	ENST00000225174	ENST00000311812		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000225174	ENST00000428383		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000225174	ENST00000519521		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
intron-3CDS	ENST00000492149	ENST00000311812		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
intron-intron	ENST00000492149	ENST00000428383		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
intron-intron	ENST00000492149	ENST00000519521		TCGA	RV	BLCA	TCGA-UY-A9PE-01A	PPIF	chr10	81111339	+	SNX31	chr8	101648239	-
Frame-shit	ENST00000366690	ENST00000438552		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RAB4A	chr1	229407117	+	SNRPB	chr20	2448404	-
Frame-shit	ENST00000366690	ENST00000381342		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RAB4A	chr1	229407117	+	SNRPB	chr20	2448404	-
5CDS-5UTR	ENST00000366690	ENST00000339610		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RAB4A	chr1	229407117	+	SNRPB	chr20	2448404	-
3UTR-3CDS	ENST00000473894	ENST00000438552		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RAB4A	chr1	229407117	+	SNRPB	chr20	2448404	-
3UTR-3CDS	ENST00000473894	ENST00000381342		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RAB4A	chr1	229407117	+	SNRPB	chr20	2448404	-
3UTR-5UTR	ENST00000473894	ENST00000339610		TCGA	RV	BLCA	TCGA-CU-A0YO-01A	RAB4A	chr1	229407117	+	SNRPB	chr20	2448404	-
5CDS-intron	ENST00000439590	ENST00000354185		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	RPL38	chr17	72206019	+	DDX21	chr10	70723858	+
3UTR-intron	ENST00000311111	ENST00000354185		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	RPL38	chr17	72206019	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000584577	ENST00000354185		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	RPL38	chr17	72206019	+	DDX21	chr10	70723858	+
intron-intron	ENST00000534490	ENST00000354185		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	RPL38	chr17	72206019	+	DDX21	chr10	70723858	+
3UTR-intron	ENST00000533498	ENST00000354185		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	RPL38	chr17	72206019	+	DDX21	chr10	70723858	+
In-frame	ENST00000457346	ENST00000541669		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000457346	ENST00000280704		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000457346	ENST00000544105		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000457346	ENST00000536880		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000457346	ENST00000535809		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000457346	ENST00000537486		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000457346	ENST00000546146		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000309263	ENST00000541669		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000309263	ENST00000280704		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000309263	ENST00000544105		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000309263	ENST00000536880		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000309263	ENST00000535809		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000309263	ENST00000537486		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000309263	ENST00000546146		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000450649	ENST00000541669		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000450649	ENST00000280704		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000450649	ENST00000544105		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000450649	ENST00000536880		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000450649	ENST00000535809		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000450649	ENST00000537486		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000450649	ENST00000546146		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000520467	ENST00000541669		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000520467	ENST00000280704		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000520467	ENST00000544105		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000520467	ENST00000536880		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000520467	ENST00000535809		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000520467	ENST00000537486		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
5CDS-intron	ENST00000520467	ENST00000546146		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-3CDS	ENST00000534295	ENST00000541669		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-3CDS	ENST00000534295	ENST00000280704		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-3CDS	ENST00000534295	ENST00000544105		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-intron	ENST00000534295	ENST00000536880		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-intron	ENST00000534295	ENST00000535809		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-intron	ENST00000534295	ENST00000537486		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
intron-intron	ENST00000534295	ENST00000546146		TCGA	RV	BLCA	TCGA-FD-A5BV-01A	SCUBE2	chr11	9090917	-	LDHC	chr11	18451284	+
In-frame	ENST00000338854	ENST00000268711		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000338854	ENST00000580462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000338854	ENST00000585041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
intron-3CDS	ENST00000395757	ENST00000268711		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
intron-intron	ENST00000395757	ENST00000580462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
intron-intron	ENST00000395757	ENST00000585041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
In-frame	ENST00000355815	ENST00000268711		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000355815	ENST00000580462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000355815	ENST00000585041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
In-frame	ENST00000261646	ENST00000268711		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000261646	ENST00000580462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000261646	ENST00000585041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
In-frame	ENST00000435530	ENST00000268711		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000435530	ENST00000580462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000435530	ENST00000585041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
intron-3CDS	ENST00000583732	ENST00000268711		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
intron-intron	ENST00000583732	ENST00000580462		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
intron-intron	ENST00000583732	ENST00000585041		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	SREBF1	chr17	17740041	-	MED9	chr17	17394593	+
5CDS-intron	ENST00000420415	ENST00000491186		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
5CDS-intron	ENST00000420415	ENST00000325318		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
5CDS-intron	ENST00000360110	ENST00000491186		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
5CDS-intron	ENST00000360110	ENST00000325318		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
5CDS-intron	ENST00000540528	ENST00000491186		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
5CDS-intron	ENST00000540528	ENST00000325318		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
intron-intron	ENST00000392396	ENST00000491186		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
intron-intron	ENST00000392396	ENST00000325318		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
intron-intron	ENST00000535031	ENST00000491186		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
intron-intron	ENST00000535031	ENST00000325318		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
intron-intron	ENST00000465288	ENST00000491186		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
intron-intron	ENST00000465288	ENST00000325318		TCGA	RV	BLCA	TCGA-G2-A2ES-01A	TFRC	chr3	195776156	-	TCTEX1D2	chr3	196042149	-
5CDS-intron	ENST00000534788	ENST00000216297		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	UPK2	chr11	118829269	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000534788	ENST00000555943		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	UPK2	chr11	118829269	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000264031	ENST00000216297		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	UPK2	chr11	118829269	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000264031	ENST00000555943		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	UPK2	chr11	118829269	+	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000354473	ENST00000368917		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
Frame-shit	ENST00000354473	ENST00000368918		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
Frame-shit	ENST00000354473	ENST00000368916		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
5CDS-intron	ENST00000354473	ENST00000467551		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
5UTR-3CDS	ENST00000496809	ENST00000368917		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
5UTR-3CDS	ENST00000496809	ENST00000368918		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
5UTR-3CDS	ENST00000496809	ENST00000368916		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
5UTR-intron	ENST00000496809	ENST00000467551		TCGA	RV	BLCA	TCGA-XF-AAML-01A	VPS72	chr1	151150477	-	GABPB2	chr1	151060666	+
Frame-shit	ENST00000358220	ENST00000380419		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
5CDS-intron	ENST00000358220	ENST00000479328		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
Frame-shit	ENST00000381329	ENST00000380419		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
5CDS-intron	ENST00000381329	ENST00000479328		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
Frame-shit	ENST00000263150	ENST00000380419		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
5CDS-intron	ENST00000263150	ENST00000479328		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
intron-3CDS	ENST00000482165	ENST00000380419		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
intron-intron	ENST00000482165	ENST00000479328		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	WDR37	chr10	1132297	+	TUBAL3	chr10	5443050	-
5UTR-3CDS	ENST00000293471	ENST00000317643		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
5UTR-3CDS	ENST00000293471	ENST00000305628		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
5UTR-3CDS	ENST00000293471	ENST00000600577		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
5UTR-3CDS	ENST00000391794	ENST00000317643		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
5UTR-3CDS	ENST00000391794	ENST00000305628		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
5UTR-3CDS	ENST00000391794	ENST00000600577		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
intron-3CDS	ENST00000601794	ENST00000317643		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
intron-3CDS	ENST00000601794	ENST00000305628		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
intron-3CDS	ENST00000601794	ENST00000600577		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	ZNF613	chr19	52433149	+	SIGLEC7	chr19	51656320	+
In-frame	ENST00000471642	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000471642	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000368336	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000368336	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000343043	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000343043	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
3UTR-3CDS	ENST00000496863	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
3UTR-3CDS	ENST00000496863	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000535183	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000535183	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000421487	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000421487	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000465375	ENST00000367833		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
In-frame	ENST00000465375	ENST00000367830		TCGA	RV	BLCA	TCGA-XF-A9SY-01A	DAP3	chr1	155679615	+	TIPRL	chr1	168160607	+
Frame-shit	ENST00000367843	ENST00000589222		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000407086		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000390652		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000408905		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000588462		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000585744		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000588874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000367843	ENST00000585812		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000589222		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000407086		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000390652		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000408905		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000588462		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000585744		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000588874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000432587	ENST00000585812		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000589222		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000407086		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000390652		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000408905		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000588462		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000585744		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000312263	ENST00000588874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000312263	ENST00000585812		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000589222		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000407086		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000390652		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000408905		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000588462		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000585744		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000588874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000367840	ENST00000585812		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000589222		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000407086		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000390652		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000408905		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000588462		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000585744		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000588874		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
intron-intron	ENST00000470919	ENST00000585812		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167974031	+	BCAS3	chr17	58987893	+
5CDS-5UTR	ENST00000228862	ENST00000332427		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
5CDS-5UTR	ENST00000228862	ENST00000537507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
5CDS-5UTR	ENST00000228862	ENST00000540510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
3UTR-5UTR	ENST00000298573	ENST00000332427		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
3UTR-5UTR	ENST00000298573	ENST00000537507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
3UTR-5UTR	ENST00000298573	ENST00000540510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
5UTR-5UTR	ENST00000545864	ENST00000332427		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
5UTR-5UTR	ENST00000545864	ENST00000537507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
5UTR-5UTR	ENST00000545864	ENST00000540510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	DUSP16	chr12	12639962	-	GPR19	chr12	12837441	-
In-frame	ENST00000584601	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000445658	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000445658	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000445658	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000445658	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000445658	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	RV	BLCA	TCGA-DK-A1A3-01A	ERBB2	chr17	37866734	+	PPP1R1B	chr17	37790136	+
5CDS-5UTR	ENST00000340473	ENST00000368713		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000340473	ENST00000368712		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A3	chr1	153520966	-
intron-5UTR	ENST00000494087	ENST00000368713		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A3	chr1	153520966	-
intron-5UTR	ENST00000494087	ENST00000368712		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A3	chr1	153520966	-
In-frame	ENST00000277817	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
In-frame	ENST00000277817	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
In-frame	ENST00000277817	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
5CDS-intron	ENST00000277817	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000412272	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000412272	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000412272	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
5CDS-intron	ENST00000412272	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000395198	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000395198	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000395198	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
5CDS-intron	ENST00000395198	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000373700	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000373700	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
Frame-shit	ENST00000373700	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
5CDS-intron	ENST00000373700	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
3UTR-3CDS	ENST00000395187	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
3UTR-3CDS	ENST00000395187	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
3UTR-3CDS	ENST00000395187	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
3UTR-intron	ENST00000395187	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-3CDS	ENST00000480158	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-3CDS	ENST00000480158	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-3CDS	ENST00000480158	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-intron	ENST00000480158	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-3CDS	ENST00000492996	ENST00000274695		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-3CDS	ENST00000492996	ENST00000378624		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-3CDS	ENST00000492996	ENST00000378610		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
intron-intron	ENST00000492996	ENST00000476517		TCGA	RV	BLCA	TCGA-FD-A3SJ-01A	HERC4	chr10	69792535	-	CDKAL1	chr6	21000458	+
5CDS-5UTR	ENST00000283249	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000283249	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000283249	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000283249	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000283249	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000283249	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5UTR-5UTR	ENST00000485635	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5UTR-5UTR	ENST00000485635	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5UTR-5UTR	ENST00000485635	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5UTR-5UTR	ENST00000485635	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5UTR-5UTR	ENST00000485635	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5UTR-5UTR	ENST00000485635	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000428609	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000428609	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000428609	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000428609	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000428609	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000428609	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409967	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409967	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409967	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409967	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409967	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409967	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409872	ENST00000474820		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409872	ENST00000348849		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409872	ENST00000409075		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409872	ENST00000409289		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409872	ENST00000392753		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
5CDS-5UTR	ENST00000409872	ENST00000409972		TCGA	RV	BLCA	TCGA-ZF-AA51-01A	ITGB6	chr2	161025723	-	RBMS1	chr2	161133894	-
In-frame	ENST00000577628	ENST00000378681		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
5CDS-intron	ENST00000577628	ENST00000463405		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
In-frame	ENST00000261292	ENST00000378681		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
5CDS-intron	ENST00000261292	ENST00000463405		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
In-frame	ENST00000427224	ENST00000378681		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
5CDS-intron	ENST00000427224	ENST00000463405		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
In-frame	ENST00000580036	ENST00000378681		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
5CDS-intron	ENST00000580036	ENST00000463405		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	LIPG	chr18	47095918	+	UCMA	chr10	13275800	-
In-frame	ENST00000416426	ENST00000589222		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000416426	ENST00000407086		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000416426	ENST00000390652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000416426	ENST00000408905		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000416426	ENST00000588462		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000416426	ENST00000585744		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000416426	ENST00000588874		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000416426	ENST00000585812		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000284073	ENST00000589222		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000284073	ENST00000407086		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000284073	ENST00000390652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000284073	ENST00000408905		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000284073	ENST00000588462		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000284073	ENST00000585744		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000284073	ENST00000588874		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000284073	ENST00000585812		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000322684	ENST00000589222		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000322684	ENST00000407086		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000322684	ENST00000390652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000322684	ENST00000408905		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000322684	ENST00000588462		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-intron	ENST00000322684	ENST00000585744		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-intron	ENST00000322684	ENST00000588874		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-intron	ENST00000322684	ENST00000585812		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000442934	ENST00000589222		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000442934	ENST00000407086		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000442934	ENST00000390652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000442934	ENST00000408905		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
In-frame	ENST00000442934	ENST00000588462		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000442934	ENST00000585744		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000442934	ENST00000588874		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000442934	ENST00000585812		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000579180	ENST00000589222		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000579180	ENST00000407086		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000579180	ENST00000390652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000579180	ENST00000408905		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000579180	ENST00000588462		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-intron	ENST00000579180	ENST00000585744		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-intron	ENST00000579180	ENST00000588874		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
intron-intron	ENST00000579180	ENST00000585812		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-3CDS	ENST00000579505	ENST00000589222		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-3CDS	ENST00000579505	ENST00000407086		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-3CDS	ENST00000579505	ENST00000390652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-3CDS	ENST00000579505	ENST00000408905		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-3CDS	ENST00000579505	ENST00000588462		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-intron	ENST00000579505	ENST00000585744		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-intron	ENST00000579505	ENST00000588874		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
3UTR-intron	ENST00000579505	ENST00000585812		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	MSI2	chr17	55729522	+	BCAS3	chr17	58885365	+
5CDS-5UTR	ENST00000397661	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
5CDS-5UTR	ENST00000397661	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
5CDS-5UTR	ENST00000592199	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
5CDS-5UTR	ENST00000592199	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000587760	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000587760	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000585575	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000585575	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000360105	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000360105	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000588228	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000588228	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000587260	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000587260	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000358552	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000358552	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000588680	ENST00000215855		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-5UTR	ENST00000588680	ENST00000404334		TCGA	RV	BLCA	TCGA-E7-A4IJ-01A	NFIX	chr19	13106678	+	CRYBB3	chr22	25597344	+
intron-intron	ENST00000374820	ENST00000593786		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000374820	ENST00000374796		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000374820	ENST00000359003		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000452740	ENST00000593786		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000452740	ENST00000374796		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000452740	ENST00000359003		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000480175	ENST00000593786		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000480175	ENST00000374796		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000480175	ENST00000359003		TCGA	RV	BLCA	TCGA-FD-A6TH-01A	PIGU	chr20	33233079	-	NCOA6	chr20	33315211	-
5UTR-3CDS	ENST00000381352	ENST00000229329		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	RASSF8	chr12	26112081	+	CMAS	chr12	22215215	+
5UTR-3CDS	ENST00000405154	ENST00000229329		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	RASSF8	chr12	26112081	+	CMAS	chr12	22215215	+
intron-3CDS	ENST00000542865	ENST00000229329		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	RASSF8	chr12	26112081	+	CMAS	chr12	22215215	+
intron-3CDS	ENST00000541490	ENST00000229329		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	RASSF8	chr12	26112081	+	CMAS	chr12	22215215	+
intron-3CDS	ENST00000282884	ENST00000229329		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	RASSF8	chr12	26112081	+	CMAS	chr12	22215215	+
3UTR-3CDS	ENST00000538081	ENST00000229329		TCGA	RV	BLCA	TCGA-ZF-A9R3-01A	RASSF8	chr12	26112081	+	CMAS	chr12	22215215	+
In-frame	ENST00000375759	ENST00000375980		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	SPEN	chr1	16174645	+	EFHD2	chr1	15752367	+
intron-3CDS	ENST00000471538	ENST00000375980		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	SPEN	chr1	16174645	+	EFHD2	chr1	15752367	+
intron-3CDS	ENST00000383777	ENST00000357716		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-3UTR	ENST00000383777	ENST00000486284		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000383777	ENST00000389336		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000383777	ENST00000402647		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000383777	ENST00000403881		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000383777	ENST00000458641		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
Frame-shit	ENST00000399451	ENST00000357716		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
5CDS-3UTR	ENST00000399451	ENST00000486284		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
5CDS-intron	ENST00000399451	ENST00000389336		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
5CDS-intron	ENST00000399451	ENST00000402647		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
5CDS-intron	ENST00000399451	ENST00000403881		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
5CDS-intron	ENST00000399451	ENST00000458641		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-3CDS	ENST00000497037	ENST00000357716		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-3UTR	ENST00000497037	ENST00000486284		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000497037	ENST00000389336		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000497037	ENST00000402647		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000497037	ENST00000403881		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-intron	ENST00000497037	ENST00000458641		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ANKRD28	chr3	15900884	-	GRM7	chr3	7782044	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BLCA	TCGA-BL-A0C8-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
In-frame	ENST00000274458	ENST00000316788		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000274458	ENST00000505423		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000515539	ENST00000316788		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000515539	ENST00000505423		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-3CDS	ENST00000503424	ENST00000316788		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-3CDS	ENST00000503424	ENST00000505423		TCGA	RV	BLCA	TCGA-2F-A9KT-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000444610	ENST00000241463		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
5CDS-intron	ENST00000444610	ENST00000480803		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
Frame-shit	ENST00000218981	ENST00000241463		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
5CDS-intron	ENST00000218981	ENST00000480803		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
Frame-shit	ENST00000280056	ENST00000241463		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
5CDS-intron	ENST00000280056	ENST00000480803		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
5UTR-3CDS	ENST00000490949	ENST00000241463		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
5UTR-intron	ENST00000490949	ENST00000480803		TCGA	RV	BLCA	TCGA-GC-A3RC-01A	DHRS12	chr13	52373670	-	RASL11A	chr13	27845621	+
5UTR-3CDS	ENST00000375765	ENST00000341700		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DIRAS2	chr9	93405034	-	GNA14	chr9	80049438	-
5UTR-intron	ENST00000375765	ENST00000464095		TCGA	RV	BLCA	TCGA-DK-A2I1-01A	DIRAS2	chr9	93405034	-	GNA14	chr9	80049438	-
Frame-shit	ENST00000378204	ENST00000287387		TCGA	RV	BLCA	TCGA-G2-A2EO-01A	EXT1	chr8	119122324	-	WDYHV1	chr8	124440164	+
5CDS-5UTR	ENST00000378204	ENST00000523984		TCGA	RV	BLCA	TCGA-G2-A2EO-01A	EXT1	chr8	119122324	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000378204	ENST00000517609		TCGA	RV	BLCA	TCGA-G2-A2EO-01A	EXT1	chr8	119122324	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000378204	ENST00000523356		TCGA	RV	BLCA	TCGA-G2-A2EO-01A	EXT1	chr8	119122324	-	WDYHV1	chr8	124440164	+
5CDS-intron	ENST00000378204	ENST00000518125		TCGA	RV	BLCA	TCGA-G2-A2EO-01A	EXT1	chr8	119122324	-	WDYHV1	chr8	124440164	+
In-frame	ENST00000311635	ENST00000335325		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
In-frame	ENST00000311635	ENST00000320619		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
In-frame	ENST00000311635	ENST00000566250		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
In-frame	ENST00000311635	ENST00000567962		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
5CDS-3UTR	ENST00000311635	ENST00000564320		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000563956	ENST00000335325		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000563956	ENST00000320619		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000563956	ENST00000566250		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000563956	ENST00000567962		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
intron-3UTR	ENST00000563956	ENST00000564320		TCGA	RV	BLCA	TCGA-E5-A4TZ-01A	FBXO31	chr16	87393901	-	ZNRF1	chr16	75127470	+
intron-intron	ENST00000454903	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000454903	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000454903	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000454903	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000406242	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000406242	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000406242	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000406242	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000604404	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000604404	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000604404	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000604404	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000435734	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000435734	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000435734	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000435734	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000603181	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000603181	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000603181	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000603181	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000604255	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000604255	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000604255	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000604255	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000346446	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000346446	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000346446	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000346446	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000344013	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000344013	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000344013	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000344013	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000603449	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000603449	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000603449	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000603449	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000406988	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000406988	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000406988	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000406988	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000605550	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000605550	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000605550	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000605550	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000604804	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000604804	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000604804	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000604804	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000605552	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000605552	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000605552	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000605552	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000535103	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000535103	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000535103	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000535103	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000603524	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000603524	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000603524	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000603524	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000604621	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000604621	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000604621	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000604621	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000605677	ENST00000371754		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000605677	ENST00000469991		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000605677	ENST00000371752		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000605677	ENST00000396105		TCGA	RV	BLCA	TCGA-GD-A3OP-01A	FXYD3	chr19	35615227	+	ZNFX1	chr20	47863418	-
intron-3CDS	ENST00000380877	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000380877	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-intron	ENST00000380877	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000220429	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000220429	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-intron	ENST00000220429	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000543881	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000543881	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-intron	ENST00000543881	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000429662	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000429662	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-intron	ENST00000429662	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000396464	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-3CDS	ENST00000396464	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
intron-intron	ENST00000396464	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000359031	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000359031	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
5UTR-intron	ENST00000359031	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000560825	ENST00000560955		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000560825	ENST00000313478		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
5UTR-intron	ENST00000560825	ENST00000561443		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	GABPB1	chr15	50638569	-	TRPM7	chr15	50875356	-
In-frame	ENST00000327946	ENST00000277865		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
5CDS-5UTR	ENST00000327946	ENST00000537649		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
5CDS-5UTR	ENST00000327946	ENST00000544149		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
5CDS-intron	ENST00000327946	ENST00000465164		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-3CDS	ENST00000536331	ENST00000277865		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-5UTR	ENST00000536331	ENST00000537649		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-5UTR	ENST00000536331	ENST00000544149		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-intron	ENST00000536331	ENST00000465164		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-3CDS	ENST00000552278	ENST00000277865		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-5UTR	ENST00000552278	ENST00000537649		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-5UTR	ENST00000552278	ENST00000544149		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-intron	ENST00000552278	ENST00000465164		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	GRID1	chr10	88123698	-	GLUD1	chr10	88836413	-
intron-intron	ENST00000477333	ENST00000216297		TCGA	RV	BLCA	TCGA-E7-A5KF-01A	KLF5	chr13	73651676	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000477333	ENST00000555943		TCGA	RV	BLCA	TCGA-E7-A5KF-01A	KLF5	chr13	73651676	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000539231	ENST00000216297		TCGA	RV	BLCA	TCGA-E7-A5KF-01A	KLF5	chr13	73651676	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000539231	ENST00000555943		TCGA	RV	BLCA	TCGA-E7-A5KF-01A	KLF5	chr13	73651676	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000377687	ENST00000216297		TCGA	RV	BLCA	TCGA-E7-A5KF-01A	KLF5	chr13	73651676	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000377687	ENST00000555943		TCGA	RV	BLCA	TCGA-E7-A5KF-01A	KLF5	chr13	73651676	+	SUPT16H	chr14	21829491	-
intron-3CDS	ENST00000602725	ENST00000371917		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-intron	ENST00000602725	ENST00000493140		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
5UTR-3CDS	ENST00000344035	ENST00000371917		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
5UTR-intron	ENST00000344035	ENST00000493140		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
5UTR-3CDS	ENST00000356536	ENST00000371917		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
5UTR-intron	ENST00000356536	ENST00000493140		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-3CDS	ENST00000457805	ENST00000371917		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-intron	ENST00000457805	ENST00000493140		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-3CDS	ENST00000470404	ENST00000371917		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-intron	ENST00000470404	ENST00000493140		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-3CDS	ENST00000526960	ENST00000371917		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
intron-intron	ENST00000526960	ENST00000493140		TCGA	RV	BLCA	TCGA-5N-A9KI-01A	PTP4A2	chr1	32403588	-	ARFGEF2	chr20	47645067	+
In-frame	ENST00000268379	ENST00000401046		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
In-frame	ENST00000268379	ENST00000419823		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
In-frame	ENST00000268379	ENST00000534324		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000268379	ENST00000287899		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000268379	ENST00000537208		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000268379	ENST00000542737		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000268379	ENST00000497820		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
In-frame	ENST00000561553	ENST00000401046		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
In-frame	ENST00000561553	ENST00000419823		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
In-frame	ENST00000561553	ENST00000534324		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000561553	ENST00000287899		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000561553	ENST00000537208		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000561553	ENST00000542737		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000561553	ENST00000497820		TCGA	RV	BLCA	TCGA-R3-A69X-01A	UQCRC2	chr16	21968887	+	CYB5RL	chr1	54645025	-
5CDS-intron	ENST00000554581	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000554581	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000554581	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000407796	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000407796	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000407796	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000349310	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000349310	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000349310	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000402615	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000402615	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000402615	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555528	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555528	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555528	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554848	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554848	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554848	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555458	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555458	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555458	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554192	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554192	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554192	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000544168	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000544168	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000544168	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554585	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554585	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000554585	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	AKT1	chr14	105235689	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000434513	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
intron-intron	ENST00000434513	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
intron-intron	ENST00000434513	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000361221	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000361221	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000361221	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000452522	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000452522	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000452522	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000375415	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000375415	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000375415	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
intron-intron	ENST00000375420	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
intron-intron	ENST00000375420	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
intron-intron	ENST00000375420	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
3UTR-intron	ENST00000469726	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
3UTR-intron	ENST00000469726	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
3UTR-intron	ENST00000469726	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000375408	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000375408	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000375408	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000167825	ENST00000375453		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000167825	ENST00000375448		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
5CDS-intron	ENST00000167825	ENST00000487048		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ARHGEF10L	chr1	18021775	+	PADI4	chr1	17668438	+
Frame-shit	ENST00000343307	ENST00000380490		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	B3GALTL	chr13	31898032	+	ALOX5AP	chr13	31330081	+
5CDS-intron	ENST00000343307	ENST00000479597		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	B3GALTL	chr13	31898032	+	ALOX5AP	chr13	31330081	+
intron-3CDS	ENST00000461652	ENST00000380490		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	B3GALTL	chr13	31898032	+	ALOX5AP	chr13	31330081	+
intron-intron	ENST00000461652	ENST00000479597		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	B3GALTL	chr13	31898032	+	ALOX5AP	chr13	31330081	+
intron-3CDS	ENST00000369760	ENST00000509894		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-3CDS	ENST00000369760	ENST00000230510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-3CDS	ENST00000369760	ENST00000369798		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-intron	ENST00000369760	ENST00000515751		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
Frame-shit	ENST00000356489	ENST00000509894		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
Frame-shit	ENST00000356489	ENST00000230510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
Frame-shit	ENST00000356489	ENST00000369798		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
5CDS-intron	ENST00000356489	ENST00000515751		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
Frame-shit	ENST00000320393	ENST00000509894		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
Frame-shit	ENST00000320393	ENST00000230510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
Frame-shit	ENST00000320393	ENST00000369798		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
5CDS-intron	ENST00000320393	ENST00000515751		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
3UTR-3CDS	ENST00000545529	ENST00000509894		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
3UTR-3CDS	ENST00000545529	ENST00000230510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
3UTR-3CDS	ENST00000545529	ENST00000369798		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
3UTR-intron	ENST00000545529	ENST00000515751		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-3CDS	ENST00000486968	ENST00000509894		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-3CDS	ENST00000486968	ENST00000230510		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-3CDS	ENST00000486968	ENST00000369798		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
intron-intron	ENST00000486968	ENST00000515751		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	BCKDHB	chr6	80912929	+	TTK	chr6	80751836	+
5CDS-5UTR	ENST00000569840	ENST00000358632		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000569840	ENST00000268053		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000569840	ENST00000419019		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000569840	ENST00000541301		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000569840	ENST00000467407		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000301618	ENST00000358632		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000301618	ENST00000268053		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000301618	ENST00000419019		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000301618	ENST00000541301		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000301618	ENST00000467407		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000565675	ENST00000358632		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000565675	ENST00000268053		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000565675	ENST00000419019		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000565675	ENST00000541301		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000565675	ENST00000467407		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
3UTR-5UTR	ENST00000374998	ENST00000358632		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
3UTR-5UTR	ENST00000374998	ENST00000268053		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
3UTR-intron	ENST00000374998	ENST00000419019		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
3UTR-intron	ENST00000374998	ENST00000541301		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
3UTR-intron	ENST00000374998	ENST00000467407		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000428789	ENST00000358632		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000428789	ENST00000268053		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000428789	ENST00000419019		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000428789	ENST00000541301		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000428789	ENST00000467407		TCGA	RV	BLCA	TCGA-GV-A40E-01A	MGAT5B	chr17	74878380	+	CYP11A1	chr15	74640396	-
In-frame	ENST00000400485	ENST00000399151		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	MORC3	chr21	37717329	+	DOPEY2	chr21	37642311	+
5CDS-intron	ENST00000400485	ENST00000492760		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	MORC3	chr21	37717329	+	DOPEY2	chr21	37642311	+
3UTR-3CDS	ENST00000487909	ENST00000399151		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	MORC3	chr21	37717329	+	DOPEY2	chr21	37642311	+
3UTR-intron	ENST00000487909	ENST00000492760		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	MORC3	chr21	37717329	+	DOPEY2	chr21	37642311	+
5CDS-intron	ENST00000550697	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000550697	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000550697	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000550697	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548580	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548580	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548580	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548580	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000293422	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000293422	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000293422	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000293422	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000348108	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000348108	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000348108	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000348108	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000549017	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000549017	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000549017	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000549017	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000549566	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000549566	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000549566	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000549566	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000536128	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000536128	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000536128	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000536128	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000547649	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000547649	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000547649	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000547649	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000547408	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000547408	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000547408	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000547408	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551589	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551589	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551589	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551589	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548400	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548400	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548400	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548400	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000548293	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000548293	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000548293	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000548293	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551954	ENST00000371754		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551954	ENST00000469991		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551954	ENST00000371752		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551954	ENST00000396105		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	MYL6	chr12	56555359	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000253925	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000253925	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000253925	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000253925	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000253925	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000253925	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000253925	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-5UTR	ENST00000253925	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000389547	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5CDS-5UTR	ENST00000389547	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000449833		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000409161		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000423696		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000338508		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000409530		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000449116		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000530548	ENST00000357171		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000530548	ENST00000468619		TCGA	RV	BLCA	TCGA-UY-A9PH-01A	PPFIA1	chr11	70118542	+	SHANK2	chr11	70666787	-
5UTR-3CDS	ENST00000522684	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000522684	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000522684	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000535192	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000535192	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000535192	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000519465	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000519465	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000519465	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000517887	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000517887	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000517887	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000521059	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000521059	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000521059	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000395218	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000395218	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000395218	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000538769	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000538769	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000538769	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000340930	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000340930	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000340930	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000519419	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000519419	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000519419	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000430260	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000430260	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000430260	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000519881	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000519881	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000519881	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000520892	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000520892	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000520892	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000519635	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000519635	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000519635	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000517712	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000517712	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000517712	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000522950	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000522950	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000522950	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000520151	ENST00000251566		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000520151	ENST00000420231		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000520151	ENST00000547910		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	PTK2	chr8	142011224	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000247833	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000247833	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000247833	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000247833	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000247833	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000247833	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000247833	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000247833	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000247833	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000378815	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000378815	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000378815	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000378815	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000378815	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000378815	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000378815	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000378815	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000378815	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000325555	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000325555	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000325555	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000325555	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000325555	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000325555	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000325555	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000325555	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000325555	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000483530	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000483530	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000483530	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000483530	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000483530	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000483530	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000483530	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000483530	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000483530	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550536	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550536	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550536	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550536	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550536	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550536	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550536	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550536	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550536	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000362025	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000362025	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000362025	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000362025	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000362025	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000362025	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000362025	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000362025	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000362025	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551641	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551641	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551641	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551641	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000551641	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000551641	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000551641	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000551641	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000551641	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553099	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553099	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553099	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553099	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000553099	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000553099	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000553099	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000553099	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000553099	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550847	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550847	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550847	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550847	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550847	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550847	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550847	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550847	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
intron-intron	ENST00000550847	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	OS9	chr12	58109543	+
Frame-shit	ENST00000335508	ENST00000388968		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
Frame-shit	ENST00000335508	ENST00000345042		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
5CDS-intron	ENST00000335508	ENST00000544407		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000462613	ENST00000388968		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000462613	ENST00000345042		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-intron	ENST00000462613	ENST00000544407		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000409915	ENST00000388968		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000409915	ENST00000345042		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-intron	ENST00000409915	ENST00000544407		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000414963	ENST00000388968		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000414963	ENST00000345042		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-intron	ENST00000414963	ENST00000544407		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000487698	ENST00000388968		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-3CDS	ENST00000487698	ENST00000345042		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-intron	ENST00000487698	ENST00000544407		TCGA	RV	BLCA	TCGA-FJ-A3ZF-01A	SF3B1	chr2	198274494	-	HSPD1	chr2	198355020	-
intron-5UTR	ENST00000449833	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449833	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449833	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449833	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449833	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449833	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449833	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449833	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409161	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409161	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000423696	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000423696	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-5UTR	ENST00000338508	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5CDS-intron	ENST00000338508	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000409530	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000409530	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000449116	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000449116	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-5UTR	ENST00000357171	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
intron-intron	ENST00000357171	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000435085		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000307198		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000419228		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000447974		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000289488		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000539271		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-5UTR	ENST00000468619	ENST00000423494		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000539587		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000538478		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000324866		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000439209		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000541614		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000536917		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
5UTR-intron	ENST00000468619	ENST00000440313		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	SHANK2	chr11	70644548	-	LRTOMT	chr11	71804542	+
3UTR-intron	ENST00000319006	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000319006	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000319006	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000319006	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000319006	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000528097	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000528097	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000528097	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000528097	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000528097	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000532202	ENST00000513761		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000532202	ENST00000347613		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000532202	ENST00000360642		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000532202	ENST00000504131		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000532202	ENST00000506924		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	TALDO1	chr11	765012	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000311922	ENST00000413379		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
5CDS-intron	ENST00000311922	ENST00000540850		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
5CDS-intron	ENST00000311922	ENST00000598840		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
5CDS-intron	ENST00000311922	ENST00000270225		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
5CDS-intron	ENST00000311922	ENST00000392776		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000520847	ENST00000413379		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000520847	ENST00000540850		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000520847	ENST00000598840		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000520847	ENST00000270225		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000520847	ENST00000392776		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000521778	ENST00000413379		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000521778	ENST00000540850		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000521778	ENST00000598840		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000521778	ENST00000270225		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000521778	ENST00000392776		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000519576	ENST00000413379		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000519576	ENST00000540850		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000519576	ENST00000598840		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000519576	ENST00000270225		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
intron-intron	ENST00000519576	ENST00000392776		TCGA	RV	BLCA	TCGA-XF-AAN0-01A	TRIB1	chr8	126443504	+	SAE1	chr19	47706928	+
In-frame	ENST00000351842	ENST00000418115		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000351842	ENST00000454011		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000351842	ENST00000422781		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000351842	ENST00000265538		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
In-frame	ENST00000265560	ENST00000418115		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000265560	ENST00000454011		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000265560	ENST00000422781		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000265560	ENST00000265538		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
intron-3CDS	ENST00000488520	ENST00000418115		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
intron-intron	ENST00000488520	ENST00000454011		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
intron-intron	ENST00000488520	ENST00000422781		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
intron-intron	ENST00000488520	ENST00000265538		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
In-frame	ENST00000416417	ENST00000418115		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000416417	ENST00000454011		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000416417	ENST00000422781		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000416417	ENST00000265538		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
In-frame	ENST00000415188	ENST00000418115		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000415188	ENST00000454011		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000415188	ENST00000422781		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
5CDS-intron	ENST00000415188	ENST00000265538		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	USP4	chr3	49377357	-	RHOA	chr3	49405981	-
Frame-shit	ENST00000359933	ENST00000354772		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
Frame-shit	ENST00000359933	ENST00000397260		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
5CDS-5UTR	ENST00000359933	ENST00000474057		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
5CDS-5UTR	ENST00000359933	ENST00000206544		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
5CDS-5UTR	ENST00000359933	ENST00000397267		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
intron-3CDS	ENST00000261834	ENST00000354772		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
intron-3CDS	ENST00000261834	ENST00000397260		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
intron-5UTR	ENST00000261834	ENST00000474057		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
intron-5UTR	ENST00000261834	ENST00000206544		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
intron-5UTR	ENST00000261834	ENST00000397267		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	ATG2B	chr14	96782870	-	SLC22A17	chr14	23816145	-
Frame-shit	ENST00000407673	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
5CDS-5UTR	ENST00000407673	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
Frame-shit	ENST00000401624	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
5CDS-5UTR	ENST00000401624	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
Frame-shit	ENST00000404898	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
5CDS-5UTR	ENST00000404898	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
Frame-shit	ENST00000400164	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
5CDS-5UTR	ENST00000400164	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
Frame-shit	ENST00000336649	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
5CDS-5UTR	ENST00000336649	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
Frame-shit	ENST00000402142	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
5CDS-5UTR	ENST00000402142	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
intron-3CDS	ENST00000471970	ENST00000325285		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
intron-5UTR	ENST00000471970	ENST00000483559		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	CACNA1I	chr22	40078666	+	FBXW5	chr9	139835623	-
Frame-shit	ENST00000296522	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000296522	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000296522	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000296522	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000296522	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000296522	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000296522	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000296522	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000296521	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000296521	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000296521	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000296521	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000296521	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000296521	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000296521	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000296521	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3CDS	ENST00000510901	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3CDS	ENST00000510901	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3CDS	ENST00000510901	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3UTR	ENST00000510901	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3UTR	ENST00000510901	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-5UTR	ENST00000510901	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-5UTR	ENST00000510901	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-5UTR	ENST00000510901	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000422112	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000422112	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000422112	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000422112	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000422112	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000422112	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000422112	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000422112	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3CDS	ENST00000541923	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3CDS	ENST00000541923	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3CDS	ENST00000541923	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3UTR	ENST00000541923	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-3UTR	ENST00000541923	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-5UTR	ENST00000541923	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-5UTR	ENST00000541923	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5UTR-5UTR	ENST00000541923	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000542498	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000542498	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000542498	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000542498	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000542498	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000542498	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000542498	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000542498	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000504433	ENST00000506455		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000504433	ENST00000511108		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000504433	ENST00000511507		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000504433	ENST00000515602		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-3UTR	ENST00000504433	ENST00000455639		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000504433	ENST00000393832		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000504433	ENST00000296518		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
5CDS-5UTR	ENST00000504433	ENST00000513574		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	HPGD	chr4	175443095	-	GUCY1A3	chr4	156629388	+
Frame-shit	ENST00000374338	ENST00000399763		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374338	ENST00000399766		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374338	ENST00000374343		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000374338	ENST00000470035		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
intron-3CDS	ENST00000488127	ENST00000399763		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
intron-3CDS	ENST00000488127	ENST00000399766		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
intron-3CDS	ENST00000488127	ENST00000374343		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
intron-intron	ENST00000488127	ENST00000470035		TCGA	RV	BLCA	TCGA-XF-A9SZ-01A	LDLRAP1	chr1	25870277	+	TMEM57	chr1	25824755	+
In-frame	ENST00000338910	ENST00000335754		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
5CDS-intron	ENST00000338910	ENST00000488802		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
5CDS-intron	ENST00000338910	ENST00000482349		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
5CDS-intron	ENST00000338910	ENST00000231909		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
intron-3CDS	ENST00000497722	ENST00000335754		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
intron-intron	ENST00000497722	ENST00000488802		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
intron-intron	ENST00000497722	ENST00000482349		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
intron-intron	ENST00000497722	ENST00000231909		TCGA	RV	BLCA	TCGA-E7-A85H-01A	PSPC1	chr13	20304379	-	ACTR8	chr3	53914136	-
In-frame	ENST00000338961	ENST00000319080		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
Frame-shit	ENST00000338961	ENST00000538698		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
5CDS-intron	ENST00000338961	ENST00000377037		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
5CDS-intron	ENST00000338961	ENST00000535996		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
Frame-shit	ENST00000277462	ENST00000319080		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
In-frame	ENST00000277462	ENST00000538698		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
5CDS-intron	ENST00000277462	ENST00000377037		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
5CDS-intron	ENST00000277462	ENST00000535996		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
intron-3CDS	ENST00000483625	ENST00000319080		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
intron-3CDS	ENST00000483625	ENST00000538698		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
intron-intron	ENST00000483625	ENST00000377037		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
intron-intron	ENST00000483625	ENST00000535996		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	PTGES2	chr9	130884641	-	MLXIP	chr12	122626238	+
Frame-shit	ENST00000510377	ENST00000336123		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	USP38	chr4	144119077	+	IL17F	chr6	52101966	-
Frame-shit	ENST00000307017	ENST00000336123		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	USP38	chr4	144119077	+	IL17F	chr6	52101966	-
intron-3CDS	ENST00000584307	ENST00000401642		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
intron-3CDS	ENST00000584307	ENST00000388940		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
5UTR-3CDS	ENST00000314574	ENST00000401642		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
5UTR-3CDS	ENST00000314574	ENST00000388940		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
5UTR-3CDS	ENST00000577611	ENST00000401642		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
5UTR-3CDS	ENST00000577611	ENST00000388940		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
intron-3CDS	ENST00000577961	ENST00000401642		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
intron-3CDS	ENST00000577961	ENST00000388940		TCGA	RV	BLCA	TCGA-GU-A42P-01A	YES1	chr18	812115	-	SCFD2	chr4	53787037	-
Frame-shit	ENST00000304222	ENST00000358763		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	ADORA2B	chr17	15848897	+	SYN3	chr22	32992722	-
Frame-shit	ENST00000304222	ENST00000332840		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	ADORA2B	chr17	15848897	+	SYN3	chr22	32992722	-
5CDS-intron	ENST00000304222	ENST00000467095		TCGA	RV	BLCA	TCGA-FD-A3B6-01A	ADORA2B	chr17	15848897	+	SYN3	chr22	32992722	-
In-frame	ENST00000430627	ENST00000588240		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
In-frame	ENST00000430627	ENST00000592237		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
In-frame	ENST00000430627	ENST00000311979		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
In-frame	ENST00000447079	ENST00000588240		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
In-frame	ENST00000447079	ENST00000592237		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
In-frame	ENST00000447079	ENST00000311979		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
intron-3CDS	ENST00000559545	ENST00000588240		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
intron-3CDS	ENST00000559545	ENST00000592237		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
intron-3CDS	ENST00000559545	ENST00000311979		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	CDK12	chr17	37682569	+	TAF15	chr17	34169371	+
In-frame	ENST00000375458	ENST00000360093		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
In-frame	ENST00000375458	ENST00000283254		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
In-frame	ENST00000375458	ENST00000409101		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000375458	ENST00000540861		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000375458	ENST00000465043		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
In-frame	ENST00000342193	ENST00000360093		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
In-frame	ENST00000342193	ENST00000283254		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
In-frame	ENST00000342193	ENST00000409101		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000342193	ENST00000540861		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000342193	ENST00000465043		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000409184	ENST00000360093		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000409184	ENST00000283254		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000409184	ENST00000409101		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000409184	ENST00000540861		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000409184	ENST00000465043		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000392717	ENST00000360093		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000392717	ENST00000283254		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000392717	ENST00000409101		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000392717	ENST00000540861		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000392717	ENST00000465043		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000194871	ENST00000360093		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000194871	ENST00000283254		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000194871	ENST00000409101		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000194871	ENST00000540861		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5CDS-intron	ENST00000194871	ENST00000465043		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5UTR-3CDS	ENST00000491126	ENST00000360093		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5UTR-3CDS	ENST00000491126	ENST00000283254		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5UTR-3CDS	ENST00000491126	ENST00000409101		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5UTR-intron	ENST00000491126	ENST00000540861		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
5UTR-intron	ENST00000491126	ENST00000465043		TCGA	RV	BLCA	TCGA-FD-A6TA-01A	COBLL1	chr2	165697666	-	SCN3A	chr2	166027058	-
Frame-shit	ENST00000374332	ENST00000374358		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
5CDS-3UTR	ENST00000374332	ENST00000480937		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
Frame-shit	ENST00000263979	ENST00000374358		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
5CDS-3UTR	ENST00000263979	ENST00000480937		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
intron-3CDS	ENST00000473891	ENST00000374358		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
intron-3UTR	ENST00000473891	ENST00000480937		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
Frame-shit	ENST00000374329	ENST00000374358		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
5CDS-3UTR	ENST00000374329	ENST00000480937		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	MAN1C1	chr1	26090458	+	TMEM50A	chr1	25687151	+
5UTR-5UTR	ENST00000425759	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-5UTR	ENST00000425759	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-5UTR	ENST00000425759	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-intron	ENST00000425759	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000292733	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000292733	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000292733	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-intron	ENST00000292733	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-5UTR	ENST00000542773	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-5UTR	ENST00000542773	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-5UTR	ENST00000542773	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5UTR-intron	ENST00000542773	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000263205	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000263205	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000263205	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-intron	ENST00000263205	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000406969	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000406969	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000406969	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-intron	ENST00000406969	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000382974	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000382974	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-5UTR	ENST00000382974	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
5CDS-intron	ENST00000382974	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000541476	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000541476	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000541476	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-intron	ENST00000541476	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000478831	ENST00000329517		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000478831	ENST00000403325		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-5UTR	ENST00000478831	ENST00000405009		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
intron-intron	ENST00000478831	ENST00000460402		TCGA	RV	BLCA	TCGA-DK-A3IK-01A	MED15	chr22	20862033	+	GNB1L	chr22	19808898	-
3UTR-3CDS	ENST00000578646	ENST00000399496		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
3UTR-5UTR	ENST00000578646	ENST00000399481		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
3UTR-5UTR	ENST00000578646	ENST00000415309		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
3UTR-5UTR	ENST00000578646	ENST00000327201		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
3UTR-5UTR	ENST00000578646	ENST00000581397		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
3UTR-5UTR	ENST00000578646	ENST00000399499		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
Frame-shit	ENST00000261537	ENST00000399496		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000261537	ENST00000399481		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000261537	ENST00000415309		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000261537	ENST00000327201		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000261537	ENST00000581397		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000261537	ENST00000399499		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	MIB1	chr18	19383975	+	CABYR	chr18	21735665	+
5UTR-3CDS	ENST00000288986	ENST00000471595		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000478469		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000251654		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000483687		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000490504		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000466072		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000482086		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000468777		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000462637		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000288986	ENST00000469217		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3UTR	ENST00000288986	ENST00000474833		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000471595		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000478469		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000251654		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000483687		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000490504		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000466072		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000482086		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000468777		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000462637		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000481752	ENST00000469217		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3UTR	ENST00000481752	ENST00000474833		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000471595		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000478469		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000251654		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000483687		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000490504		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000466072		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000482086		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000468777		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000462637		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3CDS	ENST00000469404	ENST00000469217		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
intron-3UTR	ENST00000469404	ENST00000474833		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	NCK1	chr3	136581161	+	PCCB	chr3	136002679	+
5UTR-3CDS	ENST00000452400	ENST00000358543		TCGA	RV	BLCA	TCGA-GV-A6ZA-01A	NCOA2	chr8	71208979	-	FAM150A	chr8	53455005	-
5UTR-3CDS	ENST00000452400	ENST00000523939		TCGA	RV	BLCA	TCGA-GV-A6ZA-01A	NCOA2	chr8	71208979	-	FAM150A	chr8	53455005	-
intron-3CDS	ENST00000267974	ENST00000358543		TCGA	RV	BLCA	TCGA-GV-A6ZA-01A	NCOA2	chr8	71208979	-	FAM150A	chr8	53455005	-
intron-3CDS	ENST00000267974	ENST00000523939		TCGA	RV	BLCA	TCGA-GV-A6ZA-01A	NCOA2	chr8	71208979	-	FAM150A	chr8	53455005	-
intron-3CDS	ENST00000524223	ENST00000358543		TCGA	RV	BLCA	TCGA-GV-A6ZA-01A	NCOA2	chr8	71208979	-	FAM150A	chr8	53455005	-
intron-3CDS	ENST00000524223	ENST00000523939		TCGA	RV	BLCA	TCGA-GV-A6ZA-01A	NCOA2	chr8	71208979	-	FAM150A	chr8	53455005	-
Frame-shit	ENST00000377921	ENST00000309982		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000377921	ENST00000438105		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000377921	ENST00000297574		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000377921	ENST00000330955		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000377921	ENST00000306391		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000377921	ENST00000523754		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
Frame-shit	ENST00000345264	ENST00000309982		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000345264	ENST00000438105		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000345264	ENST00000297574		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000345264	ENST00000330955		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000345264	ENST00000306391		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000345264	ENST00000523754		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-3CDS	ENST00000602389	ENST00000309982		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000602389	ENST00000438105		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000602389	ENST00000297574		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000602389	ENST00000330955		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000602389	ENST00000306391		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000602389	ENST00000523754		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-3CDS	ENST00000464074	ENST00000309982		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000464074	ENST00000438105		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000464074	ENST00000297574		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000464074	ENST00000330955		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000464074	ENST00000306391		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
intron-intron	ENST00000464074	ENST00000523754		TCGA	RV	BLCA	TCGA-LC-A66R-01A	RSU1	chr10	16858972	-	BAALC	chr8	104225147	+
In-frame	ENST00000254480	ENST00000266037		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	SMARCC1	chr3	47814307	-	DOCK3	chr3	50927457	+
5UTR-3CDS	ENST00000425518	ENST00000266037		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	SMARCC1	chr3	47814307	-	DOCK3	chr3	50927457	+
In-frame	ENST00000443765	ENST00000333538		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
5CDS-3UTR	ENST00000443765	ENST00000498380		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
In-frame	ENST00000239891	ENST00000333538		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
5CDS-3UTR	ENST00000239891	ENST00000498380		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
In-frame	ENST00000413537	ENST00000333538		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
5CDS-3UTR	ENST00000413537	ENST00000498380		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
intron-3CDS	ENST00000496689	ENST00000333538		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
intron-3UTR	ENST00000496689	ENST00000498380		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	ALG5	chr13	37559764	-	WBSCR17	chr7	71175746	+
5UTR-3CDS	ENST00000520552	ENST00000311028		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000520552	ENST00000395923		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000520552	ENST00000220931		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000520552	ENST00000521599		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000520552	ENST00000522951		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000520552	ENST00000519508		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-intron	ENST00000520552	ENST00000521371		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000335659	ENST00000311028		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000335659	ENST00000395923		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000335659	ENST00000220931		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000335659	ENST00000521599		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000335659	ENST00000522951		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000335659	ENST00000519508		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-intron	ENST00000335659	ENST00000521371		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000519597	ENST00000311028		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000519597	ENST00000395923		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000519597	ENST00000220931		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000519597	ENST00000521599		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000519597	ENST00000522951		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-3CDS	ENST00000519597	ENST00000519508		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5UTR-intron	ENST00000519597	ENST00000521371		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000520311	ENST00000311028		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000520311	ENST00000395923		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000520311	ENST00000220931		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000520311	ENST00000521599		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000520311	ENST00000522951		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000520311	ENST00000519508		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-intron	ENST00000520311	ENST00000521371		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000519316	ENST00000311028		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000519316	ENST00000395923		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000519316	ENST00000220931		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000519316	ENST00000521599		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000519316	ENST00000522951		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000519316	ENST00000519508		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-intron	ENST00000519316	ENST00000521371		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000524319	ENST00000311028		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000524319	ENST00000395923		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000524319	ENST00000220931		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000524319	ENST00000521599		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000524319	ENST00000522951		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-3CDS	ENST00000524319	ENST00000519508		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
intron-intron	ENST00000524319	ENST00000521371		TCGA	RV	BLCA	TCGA-XF-A8HH-01A	ANKRD46	chr8	101571939	-	NCALD	chr8	102705124	-
5CDS-intron	ENST00000513761	ENST00000506181		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000513761	ENST00000536354		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000347613	ENST00000506181		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000347613	ENST00000536354		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000360642	ENST00000506181		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000360642	ENST00000536354		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000504131	ENST00000506181		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
5CDS-intron	ENST00000504131	ENST00000536354		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
intron-intron	ENST00000506924	ENST00000506181		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
intron-intron	ENST00000506924	ENST00000536354		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	CLCN3	chr4	170601358	+	TDO2	chr4	156838547	+
In-frame	ENST00000540306	ENST00000441068		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
In-frame	ENST00000540306	ENST00000254090		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
In-frame	ENST00000540306	ENST00000369272		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
5CDS-intron	ENST00000540306	ENST00000465173		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
In-frame	ENST00000262415	ENST00000441068		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
In-frame	ENST00000262415	ENST00000254090		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
In-frame	ENST00000262415	ENST00000369272		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
5CDS-intron	ENST00000262415	ENST00000465173		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	DHX8	chr17	41561553	+	FMO5	chr1	146661828	-
5UTR-3CDS	ENST00000230449	ENST00000370363		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000230449	ENST00000370359		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000448181	ENST00000370363		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000448181	ENST00000370359		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000475028	ENST00000370363		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000475028	ENST00000370359		TCGA	RV	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74079108	-
5CDS-intron	ENST00000314167	ENST00000505658		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000314167	ENST00000393227		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000314167	ENST00000311571		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000314167	ENST00000240304		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000314167	ENST00000544170		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000314167	ENST00000503798		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000511163	ENST00000505658		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000511163	ENST00000393227		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000511163	ENST00000311571		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000511163	ENST00000240304		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000511163	ENST00000544170		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000511163	ENST00000503798		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000509566	ENST00000505658		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000509566	ENST00000393227		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000509566	ENST00000311571		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000509566	ENST00000240304		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000509566	ENST00000544170		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
5CDS-intron	ENST00000509566	ENST00000503798		TCGA	RV	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	843066	-	LUC7L3	chr17	48834056	+
In-frame	ENST00000352456	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000352456	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000352456	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000352456	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000352456	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
In-frame	ENST00000595018	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000595018	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000595018	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000595018	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000595018	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
In-frame	ENST00000392006	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000392006	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000392006	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000392006	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000392006	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
In-frame	ENST00000378215	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000378215	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000378215	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000378215	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000378215	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
In-frame	ENST00000602130	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000602130	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000602130	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000602130	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000602130	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
In-frame	ENST00000593587	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000593587	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000593587	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000593587	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000593587	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
In-frame	ENST00000263367	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000263367	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000263367	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000263367	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000263367	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
intron-3CDS	ENST00000594207	ENST00000252456		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
intron-5UTR	ENST00000594207	ENST00000592923		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
intron-5UTR	ENST00000594207	ENST00000535659		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
intron-3UTR	ENST00000594207	ENST00000588468		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
intron-3UTR	ENST00000594207	ENST00000544952		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	HNRNPUL1	chr19	41800591	+	CNN1	chr19	11651891	+
intron-3CDS	ENST00000540235	ENST00000352035		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000540235	ENST00000590151		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000540235	ENST00000353196		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000540235	ENST00000537919		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000540235	ENST00000393896		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-intron	ENST00000540235	ENST00000588779		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000393930	ENST00000352035		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000393930	ENST00000590151		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000393930	ENST00000353196		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000393930	ENST00000537919		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-3CDS	ENST00000393930	ENST00000393896		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
intron-intron	ENST00000393930	ENST00000588779		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000393931	ENST00000352035		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000393931	ENST00000590151		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000393931	ENST00000353196		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000393931	ENST00000537919		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000393931	ENST00000393896		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-intron	ENST00000393931	ENST00000588779		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000310706	ENST00000352035		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000310706	ENST00000590151		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000310706	ENST00000353196		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000310706	ENST00000537919		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-3CDS	ENST00000310706	ENST00000393896		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
5UTR-intron	ENST00000310706	ENST00000588779		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	JUP	chr17	39942840	-	ACLY	chr17	40035177	-
In-frame	ENST00000368321	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368321	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368321	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368321	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368321	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5CDS-intron	ENST00000368321	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5CDS-intron	ENST00000368321	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368320	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368320	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368320	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368320	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368320	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5CDS-intron	ENST00000368320	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5CDS-intron	ENST00000368320	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368319	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368319	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368319	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368319	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
In-frame	ENST00000368319	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5CDS-intron	ENST00000368319	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5CDS-intron	ENST00000368319	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-3CDS	ENST00000482337	ENST00000368315		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-3CDS	ENST00000482337	ENST00000313695		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-3CDS	ENST00000482337	ENST00000361247		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-3CDS	ENST00000482337	ENST00000368316		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-3CDS	ENST00000482337	ENST00000462460		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-intron	ENST00000482337	ENST00000477754		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
5UTR-intron	ENST00000482337	ENST00000313667		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	KIAA0907	chr1	155893418	-	ARHGEF2	chr1	155936270	-
Frame-shit	ENST00000531066	ENST00000265965		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000531066	ENST00000528200		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000531066	ENST00000532265		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000531066	ENST00000532212		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000355661	ENST00000265965		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000355661	ENST00000528200		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000355661	ENST00000532265		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000355661	ENST00000532212		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000448080	ENST00000265965		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000448080	ENST00000528200		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000448080	ENST00000532265		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000448080	ENST00000532212		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000532079	ENST00000265965		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000532079	ENST00000528200		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000532079	ENST00000532265		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000532079	ENST00000532212		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000332954	ENST00000265965		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000332954	ENST00000528200		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000332954	ENST00000532265		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000332954	ENST00000532212		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000397010	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
intron-3UTR	ENST00000309576	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
intron-3UTR	ENST00000397015	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
5UTR-3UTR	ENST00000397012	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
5UTR-3UTR	ENST00000397026	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
intron-3UTR	ENST00000397000	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
intron-3UTR	ENST00000539812	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
intron-3UTR	ENST00000287820	ENST00000432424		TCGA	RV	BLCA	TCGA-DK-AA75-01A	PPARG	chr3	12330633	+	SYN2	chr3	12187179	+
intron-3CDS	ENST00000413953	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000413953	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000413953	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000413953	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000413953	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-5UTR	ENST00000413953	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-5UTR	ENST00000413953	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000347140	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000347140	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000347140	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000347140	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000347140	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000347140	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000347140	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000358907	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000358907	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000358907	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000358907	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000358907	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000358907	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000358907	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000402412	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000402412	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000402412	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000402412	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
In-frame	ENST00000402412	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000402412	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000402412	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000441731	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000441731	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000441731	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000441731	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000441731	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-5UTR	ENST00000441731	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-5UTR	ENST00000441731	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
Frame-shit	ENST00000403821	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
Frame-shit	ENST00000403821	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
Frame-shit	ENST00000403821	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
Frame-shit	ENST00000403821	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
Frame-shit	ENST00000403821	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000403821	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000403821	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000546843	ENST00000551109		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000546843	ENST00000352268		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000546843	ENST00000394313		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000546843	ENST00000338010		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-3CDS	ENST00000546843	ENST00000546970		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-5UTR	ENST00000546843	ENST00000552382		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
intron-5UTR	ENST00000546843	ENST00000551771		TCGA	RV	BLCA	TCGA-XF-AAMY-01A	R3HDM2	chr12	57704047	-	ZNF385A	chr12	54769738	-
5CDS-5UTR	ENST00000438423	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000438423	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000438423	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000438423	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000438423	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000267811	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000267811	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000267811	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000267811	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000267811	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000452095	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000452095	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000452095	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000452095	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000452095	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000333725	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000333725	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000333725	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000333725	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000333725	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000557843	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000557843	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000557843	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000557843	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000557843	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000560764	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000560764	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000560764	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000560764	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000560764	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000543579	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000543579	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000543579	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000543579	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000543579	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000537840	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000537840	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000537840	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000537840	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000537840	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000343827	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000343827	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000343827	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000343827	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000343827	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559710	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559710	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559710	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559710	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000559710	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559703	ENST00000341724		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559703	ENST00000372004		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559703	ENST00000371998		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000559703	ENST00000371997		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000559703	ENST00000497292		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	TCF12	chr15	57213296	+	NCOA3	chr20	46211927	+
Frame-shit	ENST00000221930	ENST00000543307		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
Frame-shit	ENST00000221930	ENST00000392219		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
Frame-shit	ENST00000221930	ENST00000541435		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
Frame-shit	ENST00000221930	ENST00000590686		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
Frame-shit	ENST00000221930	ENST00000342879		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
Frame-shit	ENST00000221930	ENST00000588699		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
Frame-shit	ENST00000221930	ENST00000423817		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
5CDS-intron	ENST00000221930	ENST00000392218		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
5CDS-3UTR	ENST00000221930	ENST00000591716		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
5CDS-3UTR	ENST00000221930	ENST00000392217		TCGA	RV	BLCA	TCGA-FD-A3SO-01A	TGFB1	chr19	41838033	-	FXYD5	chr19	35655059	+
5CDS-5UTR	ENST00000283148	ENST00000409944		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000283148	ENST00000238044		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-3UTR	ENST00000283148	ENST00000489174		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000540130	ENST00000409944		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000540130	ENST00000238044		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-3UTR	ENST00000540130	ENST00000489174		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000409501	ENST00000409944		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000409501	ENST00000238044		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-3UTR	ENST00000409501	ENST00000489174		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000409032	ENST00000409944		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-5UTR	ENST00000409032	ENST00000238044		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
5CDS-3UTR	ENST00000409032	ENST00000489174		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-5UTR	ENST00000428048	ENST00000409944		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-5UTR	ENST00000428048	ENST00000238044		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-3UTR	ENST00000428048	ENST00000489174		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-5UTR	ENST00000479621	ENST00000409944		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-5UTR	ENST00000479621	ENST00000238044		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-3UTR	ENST00000479621	ENST00000489174		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	UXS1	chr2	106746130	-	C2orf40	chr2	106688300	+
intron-3CDS	ENST00000490126	ENST00000407559		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNHIT3	chr17	34842810	+	WDR60	chr7	158715068	+
In-frame	ENST00000225410	ENST00000407559		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNHIT3	chr17	34842810	+	WDR60	chr7	158715068	+
intron-3CDS	ENST00000588253	ENST00000407559		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNHIT3	chr17	34842810	+	WDR60	chr7	158715068	+
In-frame	ENST00000592616	ENST00000407559		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNHIT3	chr17	34842810	+	WDR60	chr7	158715068	+
intron-3CDS	ENST00000590858	ENST00000407559		TCGA	RV	BLCA	TCGA-FD-A6TG-01A	ZNHIT3	chr17	34842810	+	WDR60	chr7	158715068	+
In-frame	ENST00000324198	ENST00000356015		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
In-frame	ENST00000324198	ENST00000432560		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
In-frame	ENST00000324198	ENST00000357586		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
In-frame	ENST00000324198	ENST00000405198		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
In-frame	ENST00000324198	ENST00000317368		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
In-frame	ENST00000324198	ENST00000402502		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
In-frame	ENST00000324198	ENST00000415447		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
5CDS-intron	ENST00000324198	ENST00000472057		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	ADRBK2	chr22	26086250	+	AP1B1	chr22	29747814	-
5CDS-intron	ENST00000377795	ENST00000372285		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000377795	ENST00000372276		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000377795	ENST00000489304		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000353334	ENST00000372285		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000353334	ENST00000372276		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000353334	ENST00000489304		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000524315	ENST00000372285		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000524315	ENST00000372276		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000524315	ENST00000489304		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000009530	ENST00000372285		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000009530	ENST00000372276		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
intron-intron	ENST00000009530	ENST00000489304		TCGA	RV	BLCA	TCGA-XF-A9T5-01A	CD74	chr5	149781200	-	CD40	chr20	44754189	+
In-frame	ENST00000396153	ENST00000371092		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
Frame-shit	ENST00000396153	ENST00000271002		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
In-frame	ENST00000396153	ENST00000283568		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
5CDS-intron	ENST00000396153	ENST00000461681		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
Frame-shit	ENST00000371778	ENST00000371092		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
In-frame	ENST00000371778	ENST00000271002		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
Frame-shit	ENST00000371778	ENST00000283568		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
5CDS-intron	ENST00000371778	ENST00000461681		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-3CDS	ENST00000545823	ENST00000371092		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-3CDS	ENST00000545823	ENST00000271002		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-3CDS	ENST00000545823	ENST00000283568		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-intron	ENST00000545823	ENST00000461681		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-3CDS	ENST00000472808	ENST00000371092		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-3CDS	ENST00000472808	ENST00000271002		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-3CDS	ENST00000472808	ENST00000283568		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
intron-intron	ENST00000472808	ENST00000461681		TCGA	RV	BLCA	TCGA-4Z-AA84-01A	FAF1	chr1	51267303	-	ITGB3BP	chr1	63974241	-
In-frame	ENST00000356175	ENST00000580599		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000356175	ENST00000394638		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000356175	ENST00000269053		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
5CDS-3UTR	ENST00000356175	ENST00000394637		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000358273	ENST00000580599		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000358273	ENST00000394638		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000358273	ENST00000269053		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
5CDS-3UTR	ENST00000358273	ENST00000394637		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000431387	ENST00000580599		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000431387	ENST00000394638		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000431387	ENST00000269053		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
5CDS-3UTR	ENST00000431387	ENST00000394637		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000581113	ENST00000580599		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000581113	ENST00000394638		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000581113	ENST00000269053		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3UTR	ENST00000581113	ENST00000394637		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000417592	ENST00000580599		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000417592	ENST00000394638		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000417592	ENST00000269053		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3UTR	ENST00000417592	ENST00000394637		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000444181	ENST00000580599		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000444181	ENST00000394638		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000444181	ENST00000269053		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
intron-3UTR	ENST00000444181	ENST00000394637		TCGA	RV	BLCA	TCGA-DK-AA6X-01A	NF1	chr17	29497015	+	SPACA3	chr17	31323861	+
In-frame	ENST00000372577	ENST00000339996		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	NUP188	chr9	131768647	+	TMEM8C	chr9	136379907	-
5CDS-intron	ENST00000372577	ENST00000413714		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	NUP188	chr9	131768647	+	TMEM8C	chr9	136379907	-
intron-3CDS	ENST00000550219	ENST00000339996		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	NUP188	chr9	131768647	+	TMEM8C	chr9	136379907	-
intron-intron	ENST00000550219	ENST00000413714		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	NUP188	chr9	131768647	+	TMEM8C	chr9	136379907	-
In-frame	ENST00000355237	ENST00000256442		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	OCLN	chr5	68809936	+	CCNB1	chr5	68467097	+
In-frame	ENST00000396442	ENST00000256442		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	OCLN	chr5	68809936	+	CCNB1	chr5	68467097	+
intron-3CDS	ENST00000380766	ENST00000256442		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	OCLN	chr5	68809936	+	CCNB1	chr5	68467097	+
In-frame	ENST00000538151	ENST00000256442		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	OCLN	chr5	68809936	+	CCNB1	chr5	68467097	+
intron-3CDS	ENST00000542132	ENST00000256442		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	OCLN	chr5	68809936	+	CCNB1	chr5	68467097	+
intron-3CDS	ENST00000514370	ENST00000256442		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	OCLN	chr5	68809936	+	CCNB1	chr5	68467097	+
5UTR-3CDS	ENST00000380752	ENST00000381020		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	SLC7A1	chr13	30127898	-	CDX2	chr13	28539152	-
5UTR-5UTR	ENST00000380752	ENST00000548877		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	SLC7A1	chr13	30127898	-	CDX2	chr13	28539152	-
intron-3CDS	ENST00000473577	ENST00000381020		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	SLC7A1	chr13	30127898	-	CDX2	chr13	28539152	-
intron-5UTR	ENST00000473577	ENST00000548877		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	SLC7A1	chr13	30127898	-	CDX2	chr13	28539152	-
In-frame	ENST00000295887	ENST00000344644		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A10	chr2	234675680	+
In-frame	ENST00000295887	ENST00000373445		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A10	chr2	234675680	+
Frame-shit	ENST00000538689	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000538689	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000538689	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000220584	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000220584	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000220584	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
intron-3CDS	ENST00000446331	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
intron-3CDS	ENST00000446331	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
intron-3CDS	ENST00000446331	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
intron-3CDS	ENST00000443614	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
intron-3CDS	ENST00000443614	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
intron-3CDS	ENST00000443614	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000525900	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000525900	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000525900	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000528812	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000528812	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000528812	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000530664	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000530664	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000530664	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000528643	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000528643	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000528643	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000525777	ENST00000528712		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000525777	ENST00000335135		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
Frame-shit	ENST00000525777	ENST00000532059		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	FDFT1	chr8	11679387	+	GATA4	chr8	11614444	+
5UTR-3CDS	ENST00000299293	ENST00000229179		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000299293	ENST00000378905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000299293	ENST00000539906		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-intron	ENST00000299293	ENST00000401003		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000549921	ENST00000229179		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000549921	ENST00000378905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000549921	ENST00000539906		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-intron	ENST00000549921	ENST00000401003		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000550389	ENST00000229179		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000550389	ENST00000378905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000550389	ENST00000539906		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
intron-intron	ENST00000550389	ENST00000401003		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000397997	ENST00000229179		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000397997	ENST00000378905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000397997	ENST00000539906		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5UTR-intron	ENST00000397997	ENST00000401003		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	NUP107	chr12	69135593	+
5CDS-5UTR	ENST00000374864	ENST00000538132		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000374864	ENST00000217426		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000374864	ENST00000468908		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5UTR-5UTR	ENST00000535650	ENST00000538132		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5UTR-5UTR	ENST00000535650	ENST00000217426		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5UTR-5UTR	ENST00000535650	ENST00000468908		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000262650	ENST00000538132		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000262650	ENST00000217426		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000262650	ENST00000468908		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
intron-5UTR	ENST00000483727	ENST00000538132		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
intron-5UTR	ENST00000483727	ENST00000217426		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
intron-5UTR	ENST00000483727	ENST00000468908		TCGA	RV	BLCA	TCGA-BT-A20V-01A	ITCH	chr20	32981687	+	AHCY	chr20	32883391	-
5UTR-3CDS	ENST00000361786	ENST00000393774		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000361786	ENST00000460005		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000361786	ENST00000450042		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000361786	ENST00000216453		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-3CDS	ENST00000555437	ENST00000393774		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000555437	ENST00000460005		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000555437	ENST00000450042		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000555437	ENST00000216453		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-3CDS	ENST00000555611	ENST00000393774		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000555611	ENST00000460005		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000555611	ENST00000450042		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
5UTR-intron	ENST00000555611	ENST00000216453		TCGA	RV	BLCA	TCGA-CF-A7I0-01A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77332311	+
In-frame	ENST00000257821	ENST00000219169		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000257821	ENST00000569436		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000257821	ENST00000568396		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000323180	ENST00000219169		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000323180	ENST00000569436		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000323180	ENST00000568396		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000418153	ENST00000219169		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000418153	ENST00000569436		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
In-frame	ENST00000418153	ENST00000568396		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000527753	ENST00000219169		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000527753	ENST00000569436		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000527753	ENST00000568396		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	PHF21A	chr11	46098305	-	NUTF2	chr16	67902243	+
5CDS-intron	ENST00000322349	ENST00000552983		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5CDS-intron	ENST00000322349	ENST00000332896		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5CDS-intron	ENST00000322349	ENST00000552033		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5CDS-intron	ENST00000322349	ENST00000548483		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5CDS-intron	ENST00000322349	ENST00000542893		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5CDS-intron	ENST00000322349	ENST00000541813		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5CDS-3UTR	ENST00000322349	ENST00000548330		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-intron	ENST00000547833	ENST00000552983		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-intron	ENST00000547833	ENST00000332896		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-intron	ENST00000547833	ENST00000552033		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-intron	ENST00000547833	ENST00000548483		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-intron	ENST00000547833	ENST00000542893		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-intron	ENST00000547833	ENST00000541813		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
5UTR-3UTR	ENST00000547833	ENST00000548330		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	EEA1	chr12	93285405	-	CRADD	chr12	94243746	+
In-frame	ENST00000544440	ENST00000181383		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
In-frame	ENST00000544440	ENST00000439329		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
In-frame	ENST00000407578	ENST00000181383		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
In-frame	ENST00000407578	ENST00000439329		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
Frame-shit	ENST00000357337	ENST00000181383		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
Frame-shit	ENST00000357337	ENST00000439329		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
5UTR-3CDS	ENST00000360084	ENST00000181383		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
5UTR-3CDS	ENST00000360084	ENST00000439329		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
intron-3CDS	ENST00000482517	ENST00000181383		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
intron-3CDS	ENST00000482517	ENST00000439329		TCGA	RV	BLCA	TCGA-UY-A78N-01A	MYCBP2	chr13	77862296	-	CPB2	chr13	46638876	-
Frame-shit	ENST00000545472	ENST00000302538		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000545472	ENST00000544583		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000545472	ENST00000572441		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000545472	ENST00000574437		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000545472	ENST00000291107		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000545472	ENST00000543210		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000545472	ENST00000536794		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5CDS-intron	ENST00000545472	ENST00000573895		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000302538		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000544583		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000572441		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000574437		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000291107		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000543210		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000296257	ENST00000536794		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5CDS-intron	ENST00000296257	ENST00000573895		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000302538		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000544583		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000572441		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000574437		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000291107		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000543210		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-3CDS	ENST00000427465	ENST00000536794		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
5UTR-intron	ENST00000427465	ENST00000573895		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000302538		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000544583		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000572441		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000574437		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000291107		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000543210		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-3CDS	ENST00000465201	ENST00000536794		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
3UTR-intron	ENST00000465201	ENST00000573895		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SENP2	chr3	185307957	+	ABR	chr17	915225	-
Frame-shit	ENST00000262915	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000262915	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000262915	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372375	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372375	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372375	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000351035	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000351035	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000351035	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372374	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372374	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372374	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000353126	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000353126	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000353126	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000545417	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000545417	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000545417	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000330208	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000330208	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000330208	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000335430	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000335430	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000335430	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372377	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372377	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372377	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000361392	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000361392	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000361392	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000361400	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000361400	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000361400	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000347631	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000347631	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000347631	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000361812	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000361812	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000361812	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372362	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372362	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372362	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000531451	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000531451	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000531451	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372366	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372366	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372366	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372365	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372365	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372365	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372368	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372368	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372368	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000332628	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000332628	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000332628	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372372	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372372	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372372	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000531816	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000531816	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000531816	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000528371	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000528371	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000528371	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372369	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372369	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372369	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000531993	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000531993	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000531993	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000361746	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000361746	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000361746	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000533933	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000533933	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000533933	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000372367	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000372367	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000372367	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000461375	ENST00000315769		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000461375	ENST00000297737		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
intron-intron	ENST00000461375	ENST00000523823		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	ST3GAL3	chr1	44202051	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000260408	ENST00000340827		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ADAM10	chr15	59009776	-	C15orf43	chr15	45266065	+
intron-3CDS	ENST00000402627	ENST00000340827		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ADAM10	chr15	59009776	-	C15orf43	chr15	45266065	+
intron-3CDS	ENST00000561288	ENST00000340827		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ADAM10	chr15	59009776	-	C15orf43	chr15	45266065	+
intron-3CDS	ENST00000396140	ENST00000340827		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ADAM10	chr15	59009776	-	C15orf43	chr15	45266065	+
5UTR-3CDS	ENST00000558733	ENST00000340827		TCGA	RV	BLCA	TCGA-4Z-AA7R-01A	ADAM10	chr15	59009776	-	C15orf43	chr15	45266065	+
5UTR-5UTR	ENST00000356401	ENST00000418115		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000356401	ENST00000454011		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000356401	ENST00000422781		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-intron	ENST00000356401	ENST00000265538		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000449376	ENST00000418115		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000449376	ENST00000454011		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000449376	ENST00000422781		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
5UTR-intron	ENST00000449376	ENST00000265538		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
intron-5UTR	ENST00000490095	ENST00000418115		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
intron-5UTR	ENST00000490095	ENST00000454011		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
intron-5UTR	ENST00000490095	ENST00000422781		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
intron-intron	ENST00000490095	ENST00000265538		TCGA	RV	BLCA	TCGA-FD-A3B8-01A	ARIH2	chr3	48960244	+	RHOA	chr3	49413024	-
intron-5UTR	ENST00000601154	ENST00000422090		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000601154	ENST00000413454		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000601154	ENST00000352066		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000601154	ENST00000597029		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000601154	ENST00000597723		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000601154	ENST00000596217		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000601154	ENST00000600583		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000422090		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000413454		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000352066		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000597029		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000597723		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000596217		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000221922	ENST00000600583		TCGA	RV	BLCA	TCGA-FD-A6TC-01A	CCDC9	chr19	47770049	+	NUP62	chr19	50413141	-
Frame-shit	ENST00000397420	ENST00000318562		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397420	ENST00000533256		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397420	ENST00000530636		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397420	ENST00000526198		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
5CDS-intron	ENST00000397420	ENST00000534449		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000322008	ENST00000318562		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000322008	ENST00000533256		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000322008	ENST00000530636		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000322008	ENST00000526198		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
5CDS-intron	ENST00000322008	ENST00000534449		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397421	ENST00000318562		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397421	ENST00000533256		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397421	ENST00000530636		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000397421	ENST00000526198		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
5CDS-intron	ENST00000397421	ENST00000534449		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000528011	ENST00000318562		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000528011	ENST00000533256		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000528011	ENST00000530636		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
Frame-shit	ENST00000528011	ENST00000526198		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
5CDS-intron	ENST00000528011	ENST00000534449		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
intron-3CDS	ENST00000525181	ENST00000318562		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
intron-3CDS	ENST00000525181	ENST00000533256		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
intron-3CDS	ENST00000525181	ENST00000530636		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
intron-3CDS	ENST00000525181	ENST00000526198		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
intron-intron	ENST00000525181	ENST00000534449		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	CD151	chr11	836843	+	EPS8L2	chr11	710422	+
5CDS-intron	ENST00000293872	ENST00000594786		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000293872	ENST00000599700		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000293872	ENST00000263093		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000293872	ENST00000601355		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000337351	ENST00000594786		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000337351	ENST00000599700		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000337351	ENST00000263093		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000337351	ENST00000601355		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397783	ENST00000594786		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397783	ENST00000599700		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397783	ENST00000263093		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397783	ENST00000601355		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397780	ENST00000594786		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397780	ENST00000599700		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397780	ENST00000263093		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000397780	ENST00000601355		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5UTR-intron	ENST00000494366	ENST00000594786		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5UTR-intron	ENST00000494366	ENST00000599700		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5UTR-intron	ENST00000494366	ENST00000263093		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5UTR-intron	ENST00000494366	ENST00000601355		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	LUC7L	chr16	270648	-	SLC27A5	chr19	59012777	-
5UTR-3CDS	ENST00000439951	ENST00000360469		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
5UTR-3CDS	ENST00000439951	ENST00000543233		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
5UTR-3CDS	ENST00000313733	ENST00000360469		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
5UTR-3CDS	ENST00000313733	ENST00000543233		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
5UTR-3CDS	ENST00000358053	ENST00000360469		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
5UTR-3CDS	ENST00000358053	ENST00000543233		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
intron-3CDS	ENST00000471817	ENST00000360469		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
intron-3CDS	ENST00000471817	ENST00000543233		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	OSBPL2	chr20	60813653	+	CDH4	chr20	60485478	+
5CDS-5UTR	ENST00000395996	ENST00000436771		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000395996	ENST00000521246		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000358544	ENST00000436771		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000358544	ENST00000521246		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000357162	ENST00000436771		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
5CDS-5UTR	ENST00000357162	ENST00000521246		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000355155	ENST00000436771		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000355155	ENST00000521246		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000441350	ENST00000436771		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000441350	ENST00000521246		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000521932	ENST00000436771		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
intron-5UTR	ENST00000521932	ENST00000521246		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	VPS13B	chr8	100454863	+	C8orf56	chr8	104145597	-
Frame-shit	ENST00000324198	ENST00000269051		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ADRBK2	chr22	25961120	+	RHBDL3	chr17	30615811	+
Frame-shit	ENST00000324198	ENST00000538145		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ADRBK2	chr22	25961120	+	RHBDL3	chr17	30615811	+
Frame-shit	ENST00000324198	ENST00000536287		TCGA	RV	BLCA	TCGA-FD-A43P-01A	ADRBK2	chr22	25961120	+	RHBDL3	chr17	30615811	+
In-frame	ENST00000380420	ENST00000380342		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	PIR	chrX	15509285	-	TMEM27	chrX	15682518	-
Frame-shit	ENST00000380421	ENST00000380342		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	PIR	chrX	15509285	-	TMEM27	chrX	15682518	-
5UTR-3CDS	ENST00000476381	ENST00000380342		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	PIR	chrX	15509285	-	TMEM27	chrX	15682518	-
3UTR-3CDS	ENST00000467771	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
3UTR-intron	ENST00000467771	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
Frame-shit	ENST00000271620	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
5CDS-intron	ENST00000271620	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
intron-3CDS	ENST00000271619	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
intron-intron	ENST00000271619	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
intron-3CDS	ENST00000368937	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
intron-intron	ENST00000368937	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
5UTR-3CDS	ENST00000368936	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
5UTR-intron	ENST00000368936	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
5UTR-3CDS	ENST00000368935	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
5UTR-intron	ENST00000368935	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
intron-3CDS	ENST00000368934	ENST00000368777		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
intron-intron	ENST00000368934	ENST00000335535		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE4A	chr1	152680636	+
5UTR-3CDS	ENST00000251849	ENST00000405863		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-5UTR	ENST00000251849	ENST00000602349		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-3UTR	ENST00000251849	ENST00000497400		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-3CDS	ENST00000442415	ENST00000405863		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-5UTR	ENST00000442415	ENST00000602349		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-3UTR	ENST00000442415	ENST00000497400		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
intron-3CDS	ENST00000534997	ENST00000405863		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
intron-5UTR	ENST00000534997	ENST00000602349		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
intron-3UTR	ENST00000534997	ENST00000497400		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-3CDS	ENST00000542177	ENST00000405863		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-5UTR	ENST00000542177	ENST00000602349		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-3UTR	ENST00000542177	ENST00000497400		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	RAF1	chr3	12705312	-	NXPH1	chr7	8790638	+
5UTR-3CDS	ENST00000422057	ENST00000356113		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000422057	ENST00000414170		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000422057	ENST00000299022		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000422057	ENST00000433326		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000317318	ENST00000356113		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000317318	ENST00000414170		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000317318	ENST00000299022		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000317318	ENST00000433326		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000423270	ENST00000356113		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000423270	ENST00000414170		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000423270	ENST00000299022		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
Frame-shit	ENST00000423270	ENST00000433326		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000559447	ENST00000356113		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000559447	ENST00000414170		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000559447	ENST00000299022		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000559447	ENST00000433326		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	RFX7	chr15	56471468	-	LIPC	chr15	58830532	+
5UTR-3CDS	ENST00000222345	ENST00000415930		TCGA	RV	BLCA	TCGA-GU-A764-01A	SIPA1L3	chr19	38519796	+	GPI	chr19	34884153	+
5UTR-3CDS	ENST00000222345	ENST00000356487		TCGA	RV	BLCA	TCGA-GU-A764-01A	SIPA1L3	chr19	38519796	+	GPI	chr19	34884153	+
5UTR-3CDS	ENST00000222345	ENST00000586425		TCGA	RV	BLCA	TCGA-GU-A764-01A	SIPA1L3	chr19	38519796	+	GPI	chr19	34884153	+
3UTR-3CDS	ENST00000476317	ENST00000415930		TCGA	RV	BLCA	TCGA-GU-A764-01A	SIPA1L3	chr19	38519796	+	GPI	chr19	34884153	+
3UTR-3CDS	ENST00000476317	ENST00000356487		TCGA	RV	BLCA	TCGA-GU-A764-01A	SIPA1L3	chr19	38519796	+	GPI	chr19	34884153	+
3UTR-3CDS	ENST00000476317	ENST00000586425		TCGA	RV	BLCA	TCGA-GU-A764-01A	SIPA1L3	chr19	38519796	+	GPI	chr19	34884153	+
5CDS-5UTR	ENST00000589018	ENST00000599715		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589018	ENST00000006724		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589018	ENST00000338196		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589018	ENST00000401731		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589018	ENST00000602225		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000351218	ENST00000599715		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000351218	ENST00000006724		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000351218	ENST00000338196		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000351218	ENST00000401731		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000351218	ENST00000602225		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392144	ENST00000599715		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392144	ENST00000006724		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392144	ENST00000338196		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392144	ENST00000401731		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392144	ENST00000602225		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000514101	ENST00000599715		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000514101	ENST00000006724		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000514101	ENST00000338196		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000514101	ENST00000401731		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000514101	ENST00000602225		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000586732	ENST00000599715		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000586732	ENST00000006724		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000586732	ENST00000338196		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000586732	ENST00000401731		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000586732	ENST00000602225		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	ZFP30	chr19	38135511	-	CEACAM7	chr19	42191152	-
In-frame	ENST00000285039	ENST00000398545		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	MYO5B	chr18	47721137	-	CCDC11	chr18	47788589	-
intron-3CDS	ENST00000324581	ENST00000398545		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	MYO5B	chr18	47721137	-	CCDC11	chr18	47788589	-
intron-3CDS	ENST00000592688	ENST00000398545		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	MYO5B	chr18	47721137	-	CCDC11	chr18	47788589	-
intron-3CDS	ENST00000587895	ENST00000398545		TCGA	RV	BLCA	TCGA-GV-A3JZ-01A	MYO5B	chr18	47721137	-	CCDC11	chr18	47788589	-
Frame-shit	ENST00000406091	ENST00000309982		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000438105		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000297574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000330955		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000306391		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000523754		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000262231	ENST00000309982		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000438105		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000297574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000330955		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000306391		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000523754		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000507740	ENST00000309982		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000438105		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000297574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000330955		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000306391		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000523754		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000522174	ENST00000309982		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000438105		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000297574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000330955		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000306391		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000523754		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000436393	ENST00000309982		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000438105		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000297574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000330955		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000306391		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000523754		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000339750	ENST00000309982		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000438105		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000297574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000330955		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000306391		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000523754		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5UTR-3CDS	ENST00000316097	ENST00000336761		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3CDS	ENST00000316097	ENST00000233078		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3UTR	ENST00000316097	ENST00000586579		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
3UTR-3CDS	ENST00000414057	ENST00000336761		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
3UTR-3CDS	ENST00000414057	ENST00000233078		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
3UTR-3UTR	ENST00000414057	ENST00000586579		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3CDS	ENST00000409472	ENST00000336761		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3CDS	ENST00000409472	ENST00000233078		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3UTR	ENST00000409472	ENST00000586579		TCGA	RV	BLCA	TCGA-E7-A85H-01A	SCAMP4	chr19	1905438	+	DAZAP1	chr19	1417499	+
intron-3CDS	ENST00000536306	ENST00000321105		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000536306	ENST00000540524		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000536306	ENST00000542570		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000536306	ENST00000582230		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-3CDS	ENST00000543897	ENST00000321105		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000543897	ENST00000540524		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000543897	ENST00000542570		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000543897	ENST00000582230		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-3CDS	ENST00000336229	ENST00000321105		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000336229	ENST00000540524		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000336229	ENST00000542570		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000336229	ENST00000582230		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-3CDS	ENST00000538116	ENST00000321105		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000538116	ENST00000540524		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000538116	ENST00000542570		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000538116	ENST00000582230		TCGA	RV	BLCA	TCGA-K4-A3WU-01B	ZCCHC8	chr12	122984520	-	TOP3A	chr17	18196166	-
intron-intron	ENST00000532456	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000532456	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000532456	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000539648	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000539648	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000539648	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000528499	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000528499	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000528499	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000263574	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000263574	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000263574	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345598	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345598	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345598	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000338167	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000338167	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000338167	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000278756	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000278756	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000278756	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000543137	ENST00000233057		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000543137	ENST00000395127		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000543137	ENST00000405334		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5UTR-3CDS	ENST00000351989	ENST00000361682		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-3CDS	ENST00000351989	ENST00000403184		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-3CDS	ENST00000351989	ENST00000403710		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-5UTR	ENST00000351989	ENST00000407537		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-5UTR	ENST00000351989	ENST00000406520		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-intron	ENST00000351989	ENST00000449653		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-intron	ENST00000351989	ENST00000493893		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-3CDS	ENST00000383024	ENST00000361682		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-3CDS	ENST00000383024	ENST00000403184		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-3CDS	ENST00000383024	ENST00000403710		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-5UTR	ENST00000383024	ENST00000407537		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-5UTR	ENST00000383024	ENST00000406520		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-intron	ENST00000383024	ENST00000449653		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
5UTR-intron	ENST00000383024	ENST00000493893		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-3CDS	ENST00000407755	ENST00000361682		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-3CDS	ENST00000407755	ENST00000403184		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-3CDS	ENST00000407755	ENST00000403710		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-5UTR	ENST00000407755	ENST00000407537		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-5UTR	ENST00000407755	ENST00000406520		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-intron	ENST00000407755	ENST00000449653		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
intron-intron	ENST00000407755	ENST00000493893		TCGA	RV	BLCA	TCGA-UY-A78K-01A	DGCR8	chr22	20067906	+	COMT	chr22	19950050	+
Frame-shit	ENST00000321599	ENST00000296473		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
Frame-shit	ENST00000321599	ENST00000455683		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
Frame-shit	ENST00000321599	ENST00000417270		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5CDS-5UTR	ENST00000321599	ENST00000483022		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395238	ENST00000296473		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395238	ENST00000455683		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395238	ENST00000417270		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000395238	ENST00000483022		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
Frame-shit	ENST00000468463	ENST00000296473		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
Frame-shit	ENST00000468463	ENST00000455683		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
Frame-shit	ENST00000468463	ENST00000417270		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5CDS-5UTR	ENST00000468463	ENST00000483022		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000460540	ENST00000296473		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000460540	ENST00000455683		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000460540	ENST00000417270		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000460540	ENST00000483022		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000498149	ENST00000296473		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000498149	ENST00000455683		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000498149	ENST00000417270		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000498149	ENST00000483022		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	IP6K1	chr3	49775645	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000335742	ENST00000372242		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000335742	ENST00000372243		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000335742	ENST00000372244		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000335742	ENST00000476724		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000335742	ENST00000372237		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000335742	ENST00000372235		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000261509	ENST00000372242		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000261509	ENST00000372243		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000261509	ENST00000372244		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000261509	ENST00000476724		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000261509	ENST00000372237		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000261509	ENST00000372235		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000505667	ENST00000372242		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000505667	ENST00000372243		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000505667	ENST00000372244		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000505667	ENST00000476724		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000505667	ENST00000372237		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000505667	ENST00000372235		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000333488	ENST00000372242		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000333488	ENST00000372243		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000333488	ENST00000372244		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000333488	ENST00000476724		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000333488	ENST00000372237		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000333488	ENST00000372235		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000512127	ENST00000372242		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-3CDS	ENST00000512127	ENST00000372243		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000512127	ENST00000372244		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000512127	ENST00000476724		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000512127	ENST00000372237		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
intron-intron	ENST00000512127	ENST00000372235		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
5UTR-3CDS	ENST00000507735	ENST00000372242		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
5UTR-3CDS	ENST00000507735	ENST00000372243		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
5UTR-intron	ENST00000507735	ENST00000372244		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
5UTR-intron	ENST00000507735	ENST00000476724		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
5UTR-intron	ENST00000507735	ENST00000372237		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
5UTR-intron	ENST00000507735	ENST00000372235		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	PALLD	chr4	169753322	+	TMEM53	chr1	45125967	-
Frame-shit	ENST00000340513	ENST00000201979		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	TPX2	chr20	30345385	+	REM1	chr20	30070090	+
Frame-shit	ENST00000300403	ENST00000201979		TCGA	RV	BLCA	TCGA-DK-A3IV-01A	TPX2	chr20	30345385	+	REM1	chr20	30070090	+
In-frame	ENST00000336755	ENST00000519097		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
In-frame	ENST00000336755	ENST00000380036		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
In-frame	ENST00000336755	ENST00000406359		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
intron-3CDS	ENST00000534928	ENST00000519097		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
intron-3CDS	ENST00000534928	ENST00000380036		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
intron-3CDS	ENST00000534928	ENST00000406359		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
3UTR-3CDS	ENST00000461038	ENST00000519097		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
3UTR-3CDS	ENST00000461038	ENST00000380036		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
3UTR-3CDS	ENST00000461038	ENST00000406359		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
In-frame	ENST00000322831	ENST00000519097		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
In-frame	ENST00000322831	ENST00000380036		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
In-frame	ENST00000322831	ENST00000406359		TCGA	RV	BLCA	TCGA-XF-A9T4-01A	ZCCHC7	chr9	37126939	+	TEK	chr9	27197313	+
In-frame	ENST00000262367	ENST00000343516		TCGA	RV	BLCA	TCGA-GU-A42R-01A	CREBBP	chr16	3794895	-	CASKIN1	chr16	2240359	-
5CDS-intron	ENST00000262367	ENST00000564289		TCGA	RV	BLCA	TCGA-GU-A42R-01A	CREBBP	chr16	3794895	-	CASKIN1	chr16	2240359	-
In-frame	ENST00000382070	ENST00000343516		TCGA	RV	BLCA	TCGA-GU-A42R-01A	CREBBP	chr16	3794895	-	CASKIN1	chr16	2240359	-
5CDS-intron	ENST00000382070	ENST00000564289		TCGA	RV	BLCA	TCGA-GU-A42R-01A	CREBBP	chr16	3794895	-	CASKIN1	chr16	2240359	-
In-frame	ENST00000229340	ENST00000300648		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	RAB35	chr12	120546221	-	GCN1L1	chr12	120587847	-
intron-3CDS	ENST00000432953	ENST00000300648		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	RAB35	chr12	120546221	-	GCN1L1	chr12	120587847	-
In-frame	ENST00000534951	ENST00000300648		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	RAB35	chr12	120546221	-	GCN1L1	chr12	120587847	-
intron-3CDS	ENST00000543364	ENST00000300648		TCGA	RV	BLCA	TCGA-XF-AAMT-01A	RAB35	chr12	120546221	-	GCN1L1	chr12	120587847	-
Frame-shit	ENST00000202677	ENST00000252032		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	RALGAPA2	chr20	20634174	-	C20orf194	chr20	3251208	-
5CDS-3UTR	ENST00000202677	ENST00000453730		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	RALGAPA2	chr20	20634174	-	C20orf194	chr20	3251208	-
5CDS-intron	ENST00000202677	ENST00000498079		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	RALGAPA2	chr20	20634174	-	C20orf194	chr20	3251208	-
intron-3CDS	ENST00000495793	ENST00000252032		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	RALGAPA2	chr20	20634174	-	C20orf194	chr20	3251208	-
intron-3UTR	ENST00000495793	ENST00000453730		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	RALGAPA2	chr20	20634174	-	C20orf194	chr20	3251208	-
intron-intron	ENST00000495793	ENST00000498079		TCGA	RV	BLCA	TCGA-XF-A8HG-01A	RALGAPA2	chr20	20634174	-	C20orf194	chr20	3251208	-
intron-3CDS	ENST00000442101	ENST00000380680		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ELF1	chr13	41634974	-	UBL3	chr13	30351400	-
intron-3CDS	ENST00000498824	ENST00000380680		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ELF1	chr13	41634974	-	UBL3	chr13	30351400	-
intron-3CDS	ENST00000239882	ENST00000380680		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	ELF1	chr13	41634974	-	UBL3	chr13	30351400	-
In-frame	ENST00000366647	ENST00000271971		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
In-frame	ENST00000366647	ENST00000354537		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
In-frame	ENST00000366647	ENST00000366666		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
5CDS-intron	ENST00000366647	ENST00000480004		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-3CDS	ENST00000366646	ENST00000271971		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-3CDS	ENST00000366646	ENST00000354537		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-3CDS	ENST00000366646	ENST00000366666		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-intron	ENST00000366646	ENST00000480004		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-3CDS	ENST00000469332	ENST00000271971		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-3CDS	ENST00000469332	ENST00000354537		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-3CDS	ENST00000469332	ENST00000366666		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
intron-intron	ENST00000469332	ENST00000480004		TCGA	RV	BLCA	TCGA-PQ-A6FN-01A	GNPAT	chr1	231386889	+	CAPN9	chr1	230923268	+
5CDS-intron	ENST00000366956	ENST00000366978		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000366956	ENST00000366977		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000366956	ENST00000422588		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000366956	ENST00000366975		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000366956	ENST00000366976		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000366956	ENST00000473995		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000543945	ENST00000366978		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000543945	ENST00000366977		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000543945	ENST00000422588		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000543945	ENST00000366975		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000543945	ENST00000366976		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
5CDS-intron	ENST00000543945	ENST00000473995		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
intron-intron	ENST00000491277	ENST00000366978		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
intron-intron	ENST00000491277	ENST00000366977		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
intron-intron	ENST00000491277	ENST00000422588		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
intron-intron	ENST00000491277	ENST00000366975		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
intron-intron	ENST00000491277	ENST00000366976		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
intron-intron	ENST00000491277	ENST00000473995		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	PTPN14	chr1	214625148	-	NSL1	chr1	212912943	-
3UTR-3CDS	ENST00000521282	ENST00000298139		TCGA	RV	BLCA	TCGA-FD-A62O-01A	BAG4	chr8	38050313	+	WRN	chr8	31012140	+
intron-3CDS	ENST00000432471	ENST00000298139		TCGA	RV	BLCA	TCGA-FD-A62O-01A	BAG4	chr8	38050313	+	WRN	chr8	31012140	+
In-frame	ENST00000287322	ENST00000298139		TCGA	RV	BLCA	TCGA-FD-A62O-01A	BAG4	chr8	38050313	+	WRN	chr8	31012140	+
Frame-shit	ENST00000181839	ENST00000258772		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
5CDS-5UTR	ENST00000181839	ENST00000485367		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
5CDS-5UTR	ENST00000181839	ENST00000431640		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
Frame-shit	ENST00000340829	ENST00000258772		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
5CDS-5UTR	ENST00000340829	ENST00000485367		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
5CDS-5UTR	ENST00000340829	ENST00000431640		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
3UTR-3CDS	ENST00000484589	ENST00000258772		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
3UTR-5UTR	ENST00000484589	ENST00000485367		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
3UTR-5UTR	ENST00000484589	ENST00000431640		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CDK13	chr7	40041630	+	DDX56	chr7	44609727	-
5UTR-3CDS	ENST00000274695	ENST00000449981		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
5UTR-3CDS	ENST00000274695	ENST00000359357		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
5UTR-3CDS	ENST00000274695	ENST00000441566		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
5UTR-3CDS	ENST00000378624	ENST00000449981		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
5UTR-3CDS	ENST00000378624	ENST00000359357		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
5UTR-3CDS	ENST00000378624	ENST00000441566		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
intron-3CDS	ENST00000378610	ENST00000449981		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
intron-3CDS	ENST00000378610	ENST00000359357		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
intron-3CDS	ENST00000378610	ENST00000441566		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
intron-3CDS	ENST00000476517	ENST00000449981		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
intron-3CDS	ENST00000476517	ENST00000359357		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
intron-3CDS	ENST00000476517	ENST00000441566		TCGA	RV	BLCA	TCGA-DK-AA6U-01A	CDKAL1	chr6	20535625	+	DNAH8	chr6	38850686	+
5CDS-intron	ENST00000397239	ENST00000515361		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000397239	ENST00000443060		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000397239	ENST00000354419		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000397239	ENST00000351261		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000244776	ENST00000515361		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000244776	ENST00000443060		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000244776	ENST00000354419		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000244776	ENST00000351261		TCGA	RV	BLCA	TCGA-GV-A40E-01A	DEK	chr6	18264074	-	KIF25	chr6	168431453	+
5CDS-intron	ENST00000268989	ENST00000441293		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000268989	ENST00000314728		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000268989	ENST00000347697		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000268989	ENST00000395618		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000268989	ENST00000575595		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000268989	ENST00000395620		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000268989	ENST00000395626		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000268989	ENST00000571254		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000426855	ENST00000441293		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000426855	ENST00000314728		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000426855	ENST00000347697		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000426855	ENST00000395618		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000426855	ENST00000575595		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000426855	ENST00000395620		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000426855	ENST00000395626		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000426855	ENST00000571254		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000574563	ENST00000441293		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000574563	ENST00000314728		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-intron	ENST00000574563	ENST00000347697		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000574563	ENST00000395618		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000574563	ENST00000575595		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000574563	ENST00000395620		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000574563	ENST00000395626		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000574563	ENST00000571254		TCGA	RV	BLCA	TCGA-FD-A3SQ-01A	SGSM2	chr17	2246914	+	EPN2	chr17	19213198	+
Frame-shit	ENST00000301180	ENST00000553127		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	DIP2B	chr12	51108379	+	SPATS2	chr12	49919727	+
Frame-shit	ENST00000301180	ENST00000321898		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	DIP2B	chr12	51108379	+	SPATS2	chr12	49919727	+
In-frame	ENST00000301180	ENST00000552918		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	DIP2B	chr12	51108379	+	SPATS2	chr12	49919727	+
5CDS-intron	ENST00000301180	ENST00000547865		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	DIP2B	chr12	51108379	+	SPATS2	chr12	49919727	+
5CDS-intron	ENST00000301180	ENST00000552557		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	DIP2B	chr12	51108379	+	SPATS2	chr12	49919727	+
In-frame	ENST00000361924	ENST00000300738		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000361924	ENST00000423050		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000361924	ENST00000534285		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000361924	ENST00000537197		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
5CDS-intron	ENST00000361924	ENST00000528470		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
intron-3CDS	ENST00000435830	ENST00000300738		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
intron-3CDS	ENST00000435830	ENST00000423050		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
intron-3CDS	ENST00000435830	ENST00000534285		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
intron-3CDS	ENST00000435830	ENST00000537197		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
intron-intron	ENST00000435830	ENST00000528470		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000444882	ENST00000300738		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000444882	ENST00000423050		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000444882	ENST00000534285		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000444882	ENST00000537197		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
5CDS-intron	ENST00000444882	ENST00000528470		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000356847	ENST00000300738		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000356847	ENST00000423050		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000356847	ENST00000534285		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
In-frame	ENST00000356847	ENST00000537197		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
5CDS-intron	ENST00000356847	ENST00000528470		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	GOLGA4	chr3	37292975	+	RRM1	chr11	4150304	+
intron-3CDS	ENST00000541742	ENST00000487338		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
intron-5UTR	ENST00000541742	ENST00000498046		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
intron-intron	ENST00000541742	ENST00000339986		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5UTR-3CDS	ENST00000490107	ENST00000487338		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5UTR-5UTR	ENST00000490107	ENST00000498046		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5UTR-intron	ENST00000490107	ENST00000339986		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
Frame-shit	ENST00000388985	ENST00000487338		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5CDS-5UTR	ENST00000388985	ENST00000498046		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5CDS-intron	ENST00000388985	ENST00000339986		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
intron-3CDS	ENST00000366517	ENST00000487338		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
intron-5UTR	ENST00000366517	ENST00000498046		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
intron-intron	ENST00000366517	ENST00000339986		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
Frame-shit	ENST00000403792	ENST00000487338		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5CDS-5UTR	ENST00000403792	ENST00000498046		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
5CDS-intron	ENST00000403792	ENST00000339986		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247109129	-
In-frame	ENST00000262803	ENST00000321949		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000262803	ENST00000338797		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000262803	ENST00000594658		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000262803	ENST00000601916		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000599848	ENST00000321949		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000599848	ENST00000338797		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000599848	ENST00000594658		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
In-frame	ENST00000599848	ENST00000601916		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
intron-3CDS	ENST00000600310	ENST00000321949		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
intron-3CDS	ENST00000600310	ENST00000338797		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
intron-3CDS	ENST00000600310	ENST00000594658		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
intron-3CDS	ENST00000600310	ENST00000601916		TCGA	RV	BLCA	TCGA-DK-AA6W-01A	UPF1	chr19	18963880	+	CRTC1	chr19	18864310	+
5UTR-5UTR	ENST00000393829	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000393829	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000393829	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000393829	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000393829	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000393829	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000546249	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000546249	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000546249	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000546249	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000546249	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000546249	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000537728	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000537728	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000537728	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000537728	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000537728	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000537728	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000264649	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000264649	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000264649	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000264649	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000264649	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000264649	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000585525	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000585525	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000585525	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000585525	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000585525	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000585525	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000343619	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000343619	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000343619	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000343619	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000343619	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000343619	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000544137	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-5UTR	ENST00000544137	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000544137	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000544137	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000544137	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5UTR-intron	ENST00000544137	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
intron-5UTR	ENST00000587797	ENST00000345506		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
intron-5UTR	ENST00000587797	ENST00000590949		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
intron-intron	ENST00000587797	ENST00000546010		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
intron-intron	ENST00000587797	ENST00000452307		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
intron-intron	ENST00000587797	ENST00000588868		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
intron-intron	ENST00000587797	ENST00000587646		TCGA	RV	BLCA	TCGA-BT-A20U-01A	ATP6V0A1	chr17	40610981	+	STAT5A	chr17	40440074	+
5CDS-intron	ENST00000264093	ENST00000409731		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000264093	ENST00000345517		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000264093	ENST00000409918		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000264093	ENST00000409624		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
intron-intron	ENST00000348222	ENST00000409731		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
intron-intron	ENST00000348222	ENST00000345517		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
intron-intron	ENST00000348222	ENST00000409918		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
intron-intron	ENST00000348222	ENST00000409624		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
3UTR-intron	ENST00000462685	ENST00000409731		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
3UTR-intron	ENST00000462685	ENST00000345517		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
3UTR-intron	ENST00000462685	ENST00000409918		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
3UTR-intron	ENST00000462685	ENST00000409624		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000356837	ENST00000409731		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000356837	ENST00000345517		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000356837	ENST00000409918		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5CDS-intron	ENST00000356837	ENST00000409624		TCGA	RV	BLCA	TCGA-BT-A3PJ-01A	DGUOK	chr2	74177859	+	ACTG2	chr2	74129487	+
5UTR-3CDS	ENST00000292852	ENST00000392505		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-3CDS	ENST00000292852	ENST00000359685		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-intron	ENST00000292852	ENST00000357080		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-intron	ENST00000292852	ENST00000409045		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-intron	ENST00000292852	ENST00000190611		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-intron	ENST00000292852	ENST00000409631		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-intron	ENST00000292852	ENST00000315022		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
5UTR-intron	ENST00000292852	ENST00000477097		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-3CDS	ENST00000595329	ENST00000392505		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-3CDS	ENST00000595329	ENST00000359685		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-intron	ENST00000595329	ENST00000357080		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-intron	ENST00000595329	ENST00000409045		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-intron	ENST00000595329	ENST00000190611		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-intron	ENST00000595329	ENST00000409631		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-intron	ENST00000595329	ENST00000315022		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
intron-intron	ENST00000595329	ENST00000477097		TCGA	RV	BLCA	TCGA-ZF-AA58-01A	FBXO17	chr19	39466226	-	OSBPL6	chr2	179259040	+
In-frame	ENST00000504449	ENST00000367993		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	PCP4L1	chr1	161228773	+	NDUFS2	chr1	161183170	+
In-frame	ENST00000504449	ENST00000392179		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	PCP4L1	chr1	161228773	+	NDUFS2	chr1	161183170	+
5CDS-intron	ENST00000504449	ENST00000476409		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	PCP4L1	chr1	161228773	+	NDUFS2	chr1	161183170	+
5CDS-3UTR	ENST00000504449	ENST00000465923		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	PCP4L1	chr1	161228773	+	NDUFS2	chr1	161183170	+
In-frame	ENST00000393409	ENST00000290913		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
In-frame	ENST00000393409	ENST00000508789		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
5CDS-3UTR	ENST00000393409	ENST00000515867		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
In-frame	ENST00000251772	ENST00000290913		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
In-frame	ENST00000251772	ENST00000508789		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
5CDS-3UTR	ENST00000251772	ENST00000515867		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
intron-3CDS	ENST00000505278	ENST00000290913		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
intron-3CDS	ENST00000505278	ENST00000508789		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
intron-3UTR	ENST00000505278	ENST00000515867		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	PLXNA1	chr3	126708630	+	CHCHD6	chr3	126633523	+
intron-5UTR	ENST00000432519	ENST00000314124		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000432519	ENST00000435575		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000432519	ENST00000435218		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000432519	ENST00000476331		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000432519	ENST00000431022		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000432519	ENST00000264728		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000334133	ENST00000314124		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000334133	ENST00000435575		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000334133	ENST00000435218		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5UTR-intron	ENST00000334133	ENST00000476331		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5UTR-intron	ENST00000334133	ENST00000431022		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000334133	ENST00000264728		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000483671	ENST00000314124		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000483671	ENST00000435575		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000483671	ENST00000435218		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000483671	ENST00000476331		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000483671	ENST00000431022		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000483671	ENST00000264728		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RFTN1	chr3	16554949	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000371477	ENST00000259746		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	CDC5L	chr6	44376369	+	TMEM63B	chr6	44102298	+
5CDS-5UTR	ENST00000371477	ENST00000323267		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	CDC5L	chr6	44376369	+	TMEM63B	chr6	44102298	+
5CDS-intron	ENST00000371477	ENST00000527188		TCGA	RV	BLCA	TCGA-GC-A3RB-01A	CDC5L	chr6	44376369	+	TMEM63B	chr6	44102298	+
5UTR-3CDS	ENST00000420083	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-5UTR	ENST00000420083	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-3CDS	ENST00000449870	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-5UTR	ENST00000449870	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-3CDS	ENST00000318511	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-5UTR	ENST00000318511	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-3CDS	ENST00000407004	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-5UTR	ENST00000407004	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-3CDS	ENST00000589998	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5UTR-5UTR	ENST00000589998	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-3CDS	ENST00000250241	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000250241	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-3CDS	ENST00000592763	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000592763	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-3CDS	ENST00000588657	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000588657	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-3CDS	ENST00000590261	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000590261	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-3CDS	ENST00000586544	ENST00000309469		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000586544	ENST00000540862		TCGA	RV	BLCA	TCGA-XF-A9SI-01A	ILF3	chr19	10765163	+	ATG4D	chr19	10662573	+
5CDS-intron	ENST00000371953	ENST00000371947		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
5CDS-intron	ENST00000371953	ENST00000437752		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
5CDS-intron	ENST00000371953	ENST00000331772		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
5CDS-intron	ENST00000371953	ENST00000466945		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
intron-intron	ENST00000472832	ENST00000371947		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
intron-intron	ENST00000472832	ENST00000437752		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
intron-intron	ENST00000472832	ENST00000331772		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
intron-intron	ENST00000472832	ENST00000466945		TCGA	RV	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89693008	+	RNLS	chr10	90045263	-
intron-3CDS	ENST00000309964	ENST00000251566		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000309964	ENST00000420231		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000309964	ENST00000547910		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000381322	ENST00000251566		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000381322	ENST00000420231		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000381322	ENST00000547910		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000513440	ENST00000251566		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000513440	ENST00000420231		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000513440	ENST00000547910		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000506923	ENST00000251566		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-5UTR	ENST00000506923	ENST00000420231		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-intron	ENST00000506923	ENST00000547910		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412949	-	UGT2A3	chr4	69798477	-
5UTR-3CDS	ENST00000383737	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000395734	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000426837	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000360240	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000439356	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000264724	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000420772	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000441748	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000462206	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000434267	ENST00000434006		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000281928	ENST00000419821		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
Frame-shit	ENST00000281928	ENST00000392533		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5CDS-intron	ENST00000281928	ENST00000537952		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5CDS-intron	ENST00000281928	ENST00000543709		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5CDS-intron	ENST00000281928	ENST00000536979		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5UTR-3CDS	ENST00000551197	ENST00000419821		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5UTR-3CDS	ENST00000551197	ENST00000392533		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5UTR-intron	ENST00000551197	ENST00000537952		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5UTR-intron	ENST00000551197	ENST00000543709		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
5UTR-intron	ENST00000551197	ENST00000536979		TCGA	RV	BLCA	TCGA-4Z-AA82-01A	MED13L	chr12	116549233	-	TAOK3	chr12	118651915	-
intron-intron	ENST00000419333	ENST00000491186		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
intron-intron	ENST00000419333	ENST00000325318		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000292823	ENST00000491186		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000292823	ENST00000325318		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000431016	ENST00000491186		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000431016	ENST00000325318		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000491544	ENST00000491186		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000491544	ENST00000325318		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5CDS-3UTR	ENST00000203407	ENST00000265563		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	UQCRC1	chr3	48637496	-	PRKAR2A	chr3	48785373	-
5CDS-3UTR	ENST00000203407	ENST00000454963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	UQCRC1	chr3	48637496	-	PRKAR2A	chr3	48785373	-
5CDS-intron	ENST00000203407	ENST00000296446		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	UQCRC1	chr3	48637496	-	PRKAR2A	chr3	48785373	-
intron-3UTR	ENST00000493806	ENST00000265563		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	UQCRC1	chr3	48637496	-	PRKAR2A	chr3	48785373	-
intron-3UTR	ENST00000493806	ENST00000454963		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	UQCRC1	chr3	48637496	-	PRKAR2A	chr3	48785373	-
intron-intron	ENST00000493806	ENST00000296446		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	UQCRC1	chr3	48637496	-	PRKAR2A	chr3	48785373	-
Frame-shit	ENST00000340281	ENST00000343253		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000340281	ENST00000401026		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000340281	ENST00000338949		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000340281	ENST00000334652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000340281	ENST00000557479		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5CDS-3UTR	ENST00000340281	ENST00000421014		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000361911	ENST00000343253		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000361911	ENST00000401026		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000361911	ENST00000338949		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000361911	ENST00000334652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000361911	ENST00000557479		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5CDS-3UTR	ENST00000361911	ENST00000421014		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000370447	ENST00000343253		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000370447	ENST00000401026		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000370447	ENST00000338949		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000370447	ENST00000334652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
Frame-shit	ENST00000370447	ENST00000557479		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5CDS-3UTR	ENST00000370447	ENST00000421014		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5UTR-3CDS	ENST00000455342	ENST00000343253		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5UTR-3CDS	ENST00000455342	ENST00000401026		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5UTR-3CDS	ENST00000455342	ENST00000338949		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5UTR-3CDS	ENST00000455342	ENST00000334652		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5UTR-3CDS	ENST00000455342	ENST00000557479		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
5UTR-3UTR	ENST00000455342	ENST00000421014		TCGA	RV	BLCA	TCGA-2F-A9KR-01A	ZNF326	chr1	90460832	+	CCDC18	chr1	93691890	+
intron-intron	ENST00000339083	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
intron-intron	ENST00000369633	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000369642	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000285735	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
intron-intron	ENST00000369638	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
intron-intron	ENST00000369637	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
intron-intron	ENST00000369636	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
intron-intron	ENST00000369632	ENST00000354185		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	RHOC	chr1	113243755	-	DDX21	chr10	70723858	+
5UTR-3CDS	ENST00000305476	ENST00000327896		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SEMA4C	chr2	97535613	-	FAM178B	chr2	97613639	-
5UTR-3CDS	ENST00000305476	ENST00000417561		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SEMA4C	chr2	97535613	-	FAM178B	chr2	97613639	-
5UTR-3CDS	ENST00000305476	ENST00000490605		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SEMA4C	chr2	97535613	-	FAM178B	chr2	97613639	-
5UTR-intron	ENST00000305476	ENST00000393526		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SEMA4C	chr2	97535613	-	FAM178B	chr2	97613639	-
5UTR-intron	ENST00000305476	ENST00000470789		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	SEMA4C	chr2	97535613	-	FAM178B	chr2	97613639	-
Frame-shit	ENST00000375735	ENST00000434758		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000375735	ENST00000526781		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000375735	ENST00000534360		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000334267	ENST00000434758		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000334267	ENST00000526781		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000334267	ENST00000534360		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000398093	ENST00000434758		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000398093	ENST00000526781		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
Frame-shit	ENST00000398093	ENST00000534360		TCGA	RV	BLCA	TCGA-C4-A0F0-01A	DYNC2H1	chr11	102999734	+	C11orf70	chr11	101918546	+
5CDS-intron	ENST00000331483	ENST00000513761		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331483	ENST00000347613		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331483	ENST00000360642		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331483	ENST00000504131		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331483	ENST00000506924		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000576390	ENST00000513761		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000576390	ENST00000347613		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000576390	ENST00000360642		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000576390	ENST00000504131		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000576390	ENST00000506924		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000439918	ENST00000513761		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000439918	ENST00000347613		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000439918	ENST00000360642		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000439918	ENST00000504131		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000439918	ENST00000506924		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472244	ENST00000513761		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472244	ENST00000347613		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472244	ENST00000360642		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472244	ENST00000504131		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000472244	ENST00000506924		TCGA	RV	BLCA	TCGA-E7-A677-01A	P4HB	chr17	79801037	-	CLCN3	chr4	170623929	+
intron-5UTR	ENST00000346618	ENST00000572316		TCGA	RV	BLCA	TCGA-GU-A764-01A	E2F3	chr6	20404063	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000346618	ENST00000354968		TCGA	RV	BLCA	TCGA-GU-A764-01A	E2F3	chr6	20404063	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000346618	ENST00000393450		TCGA	RV	BLCA	TCGA-GU-A764-01A	E2F3	chr6	20404063	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000535432	ENST00000572316		TCGA	RV	BLCA	TCGA-GU-A764-01A	E2F3	chr6	20404063	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000535432	ENST00000354968		TCGA	RV	BLCA	TCGA-GU-A764-01A	E2F3	chr6	20404063	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000535432	ENST00000393450		TCGA	RV	BLCA	TCGA-GU-A764-01A	E2F3	chr6	20404063	+	MYL4	chr17	45286755	+
Frame-shit	ENST00000263253	ENST00000249016		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	EP300	chr22	41489102	+	MCHR1	chr22	41076953	+
In-frame	ENST00000263253	ENST00000381433		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	EP300	chr22	41489102	+	MCHR1	chr22	41076953	+
5CDS-3UTR	ENST00000263253	ENST00000498400		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	EP300	chr22	41489102	+	MCHR1	chr22	41076953	+
5CDS-intron	ENST00000167586	ENST00000216297		TCGA	RV	BLCA	TCGA-DK-A3WX-01A	KRT14	chr17	39738531	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000167586	ENST00000555943		TCGA	RV	BLCA	TCGA-DK-A3WX-01A	KRT14	chr17	39738531	-	SUPT16H	chr14	21829491	-
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000369764		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000369764		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	BLCA	TCGA-UY-A9PB-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
In-frame	ENST00000576409	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000576409	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000576409	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000576409	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000576409	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000574428	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000574428	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000574428	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000574428	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000371937	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000371937	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000371937	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000371937	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000542495	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000542495	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000542495	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000542495	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000329231	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000329231	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000329231	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000329231	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
In-frame	ENST00000532925	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000532925	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000532925	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
5CDS-intron	ENST00000532925	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000371714		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000371710		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000337809		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000435686		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000447887		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000453295		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000428468		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000530544		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000531828		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000525633	ENST00000361556		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000525633	ENST00000473207		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000525633	ENST00000462759		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-intron	ENST00000525633	ENST00000486942		TCGA	RV	BLCA	TCGA-CF-A1HS-01A	ATPAF1	chr1	47108866	-	OSBPL9	chr1	52242505	+
intron-3CDS	ENST00000327367	ENST00000261880		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-intron	ENST00000327367	ENST00000538028		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000327367	ENST00000561452		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000327367	ENST00000542650		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-3CDS	ENST00000559092	ENST00000261880		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-intron	ENST00000559092	ENST00000538028		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000559092	ENST00000561452		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000559092	ENST00000542650		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-3CDS	ENST00000540846	ENST00000261880		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-intron	ENST00000540846	ENST00000538028		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000540846	ENST00000561452		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000540846	ENST00000542650		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
Frame-shit	ENST00000439724	ENST00000261880		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
5CDS-intron	ENST00000439724	ENST00000538028		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
5CDS-5UTR	ENST00000439724	ENST00000561452		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
5CDS-5UTR	ENST00000439724	ENST00000542650		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-3CDS	ENST00000537194	ENST00000261880		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-intron	ENST00000537194	ENST00000538028		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000537194	ENST00000561452		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-5UTR	ENST00000537194	ENST00000542650		TCGA	RV	BLCA	TCGA-GU-A42Q-01A	SMAD3	chr15	67430438	+	AAGAB	chr15	67529158	-
intron-3CDS	ENST00000441293	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-intron	ENST00000441293	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000441293	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000441293	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-3CDS	ENST00000314728	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-intron	ENST00000314728	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000314728	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000314728	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-3CDS	ENST00000347697	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-intron	ENST00000347697	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000347697	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000347697	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-3CDS	ENST00000395618	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-intron	ENST00000395618	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000395618	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000395618	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-3CDS	ENST00000575595	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-intron	ENST00000575595	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000575595	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
5UTR-5UTR	ENST00000575595	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-3CDS	ENST00000395620	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-intron	ENST00000395620	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000395620	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000395620	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-3CDS	ENST00000395626	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-intron	ENST00000395626	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000395626	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000395626	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-3CDS	ENST00000571254	ENST00000342679		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-intron	ENST00000571254	ENST00000534743		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000571254	ENST00000361818		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
intron-5UTR	ENST00000571254	ENST00000316920		TCGA	RV	BLCA	TCGA-K4-A4AC-01A	EPN2	chr17	19140844	+	MAP2K3	chr17	21201725	+
In-frame	ENST00000454903	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000454903	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000406242	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000406242	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604404	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604404	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000435734	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000435734	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000603181	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000603181	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604255	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604255	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000346446	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000346446	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000344013	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000344013	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000603449	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000603449	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000406988	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000406988	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000605550	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000605550	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604804	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604804	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000605552	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000605552	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000535103	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000535103	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000603524	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000603524	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604621	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000604621	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000605677	ENST00000446034		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000605677	ENST00000432826		TCGA	RV	BLCA	TCGA-DK-A3X2-01A	FXYD3	chr19	35610320	+	TARM1	chr19	54579170	-
In-frame	ENST00000237696	ENST00000480820		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000237696	ENST00000295930		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000237696	ENST00000464171		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000237696	ENST00000312179		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000237696	ENST00000475278		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5CDS-intron	ENST00000237696	ENST00000496268		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000479756	ENST00000480820		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000479756	ENST00000295930		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000479756	ENST00000464171		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000479756	ENST00000312179		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
In-frame	ENST00000479756	ENST00000475278		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5CDS-intron	ENST00000479756	ENST00000496268		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5UTR-3CDS	ENST00000498640	ENST00000480820		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5UTR-3CDS	ENST00000498640	ENST00000295930		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5UTR-3CDS	ENST00000498640	ENST00000464171		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5UTR-3CDS	ENST00000498640	ENST00000312179		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5UTR-3CDS	ENST00000498640	ENST00000475278		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
5UTR-intron	ENST00000498640	ENST00000496268		TCGA	RV	BLCA	TCGA-G2-AA3F-01A	RARRES1	chr3	158431586	-	RSRC1	chr3	158072646	+
Frame-shit	ENST00000255559	ENST00000366535		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000255559	ENST00000462358		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
Frame-shit	ENST00000542342	ENST00000366535		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000542342	ENST00000462358		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
intron-3CDS	ENST00000579988	ENST00000366535		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
intron-intron	ENST00000579988	ENST00000462358		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
Frame-shit	ENST00000579732	ENST00000366535		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000579732	ENST00000462358		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	SLC39A11	chr17	71080947	-	ADSS	chr1	244601070	-
In-frame	ENST00000266674	ENST00000229195		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
In-frame	ENST00000266674	ENST00000418359		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000266674	ENST00000548230		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000266674	ENST00000551483		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
In-frame	ENST00000536515	ENST00000229195		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
In-frame	ENST00000536515	ENST00000418359		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000536515	ENST00000548230		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000536515	ENST00000551483		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
In-frame	ENST00000540815	ENST00000229195		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
In-frame	ENST00000540815	ENST00000418359		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000540815	ENST00000548230		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000540815	ENST00000551483		TCGA	RV	BLCA	TCGA-ZF-AA4U-01A	LGR5	chr12	71928966	+	CNOT2	chr12	70747609	+
In-frame	ENST00000262067	ENST00000258761		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
In-frame	ENST00000262067	ENST00000433922		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
5CDS-intron	ENST00000262067	ENST00000432311		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
5CDS-3UTR	ENST00000262067	ENST00000452975		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
5CDS-3UTR	ENST00000262067	ENST00000405202		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
5CDS-3UTR	ENST00000262067	ENST00000407633		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
intron-3CDS	ENST00000466195	ENST00000258761		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
intron-3CDS	ENST00000466195	ENST00000433922		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
intron-intron	ENST00000466195	ENST00000432311		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
intron-3UTR	ENST00000466195	ENST00000452975		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
intron-3UTR	ENST00000466195	ENST00000405202		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
intron-3UTR	ENST00000466195	ENST00000407633		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	TSPAN13	chr7	16793655	+	BZW2	chr7	16734459	+
In-frame	ENST00000306107	ENST00000397821		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000306107	ENST00000379716		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000306107	ENST00000379698		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000306107	ENST00000541422		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
Frame-shit	ENST00000306107	ENST00000379697		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
5CDS-intron	ENST00000306107	ENST00000477102		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000472644	ENST00000397821		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000472644	ENST00000379716		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000472644	ENST00000379698		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
In-frame	ENST00000472644	ENST00000541422		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
Frame-shit	ENST00000472644	ENST00000379697		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
5CDS-intron	ENST00000472644	ENST00000477102		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000481337	ENST00000397821		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000481337	ENST00000379716		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000481337	ENST00000379698		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000481337	ENST00000541422		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000481337	ENST00000379697		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-intron	ENST00000481337	ENST00000477102		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000486979	ENST00000397821		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000486979	ENST00000379716		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000486979	ENST00000379698		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000486979	ENST00000541422		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000486979	ENST00000379697		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-intron	ENST00000486979	ENST00000477102		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000389927	ENST00000397821		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000389927	ENST00000379716		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000389927	ENST00000379698		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000389927	ENST00000541422		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-3CDS	ENST00000389927	ENST00000379697		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
intron-intron	ENST00000389927	ENST00000477102		TCGA	RV	BLCA	TCGA-GV-A3QH-01A	ALCAM	chr3	105086325	+	SH3KBP1	chrX	19606920	-
Frame-shit	ENST00000285599	ENST00000313288		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	MAN2B2	chr4	6580225	+	TACC3	chr4	1737458	+
Frame-shit	ENST00000504248	ENST00000313288		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	MAN2B2	chr4	6580225	+	TACC3	chr4	1737458	+
intron-3CDS	ENST00000504960	ENST00000313288		TCGA	RV	BLCA	TCGA-DK-A3IS-01A	MAN2B2	chr4	6580225	+	TACC3	chr4	1737458	+
In-frame	ENST00000396516	ENST00000434724		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
In-frame	ENST00000396516	ENST00000439887		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
In-frame	ENST00000396516	ENST00000563468		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
In-frame	ENST00000396516	ENST00000420576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
5CDS-5UTR	ENST00000396516	ENST00000564790		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000434724		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000439887		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000563468		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000420576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
5CDS-5UTR	ENST00000355758	ENST00000564790		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000434724		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000439887		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000563468		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000420576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-5UTR	ENST00000575984	ENST00000564790		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000434724		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000439887		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000563468		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000420576		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
intron-5UTR	ENST00000575170	ENST00000564790		TCGA	RV	BLCA	TCGA-XF-AAML-01A	ZC3H7A	chr16	11868092	-	GSPT1	chr16	11976952	-
5CDS-intron	ENST00000053867	ENST00000335183		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000543789		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000442975		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000458126		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000556102		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000541304		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000556305		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
5CDS-intron	ENST00000053867	ENST00000395577		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000335183		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000543789		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000442975		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000458126		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000556102		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000541304		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000556305		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589265	ENST00000395577		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000335183		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000543789		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000442975		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000458126		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000556102		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000541304		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000556305		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
intron-intron	ENST00000589923	ENST00000395577		TCGA	RV	BLCA	TCGA-FD-A3SS-01A	GRN	chr17	42430470	+	CDKN3	chr14	54877897	+
Frame-shit	ENST00000331159	ENST00000535772		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000331159	ENST00000344290		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000331159	ENST00000351559		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000331159	ENST00000347967		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000331159	ENST00000262410		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000331159	ENST00000340799		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000570299		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000334239		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000446361		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000574436		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000431008		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000571987		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000420682		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000415613		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000331159	ENST00000576518		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000577233	ENST00000535772		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000577233	ENST00000344290		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000577233	ENST00000351559		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000577233	ENST00000347967		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000577233	ENST00000262410		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
Frame-shit	ENST00000577233	ENST00000340799		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000570299		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000334239		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000446361		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000574436		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000431008		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000571987		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000420682		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000415613		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
5CDS-intron	ENST00000577233	ENST00000576518		TCGA	RV	BLCA	TCGA-HQ-A2OF-01A	SOCS7	chr17	36508915	+	MAPT	chr17	44101322	+
In-frame	ENST00000456935	ENST00000592204		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000456935	ENST00000393233		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000456935	ENST00000589272		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000456935	ENST00000322912		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000456935	ENST00000458671		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000221363	ENST00000592204		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000221363	ENST00000393233		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000221363	ENST00000589272		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000221363	ENST00000322912		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
In-frame	ENST00000221363	ENST00000458671		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000495617	ENST00000592204		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000495617	ENST00000393233		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000495617	ENST00000589272		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000495617	ENST00000322912		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000495617	ENST00000458671		TCGA	RV	BLCA	TCGA-ZF-A9R9-01A	MAN2B1	chr19	12760727	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000360540	ENST00000333942		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
Frame-shit	ENST00000360540	ENST00000358365		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000360540	ENST00000583994		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000360540	ENST00000545287		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000360540	ENST00000354266		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000360540	ENST00000394692		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000360540	ENST00000581094		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-intron	ENST00000360540	ENST00000580976		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-3CDS	ENST00000544451	ENST00000333942		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-3CDS	ENST00000544451	ENST00000358365		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000544451	ENST00000583994		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000544451	ENST00000545287		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000544451	ENST00000354266		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000544451	ENST00000394692		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000544451	ENST00000581094		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-intron	ENST00000544451	ENST00000580976		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-3CDS	ENST00000519559	ENST00000333942		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-3CDS	ENST00000519559	ENST00000358365		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000519559	ENST00000583994		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000519559	ENST00000545287		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000519559	ENST00000354266		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000519559	ENST00000394692		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000519559	ENST00000581094		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-intron	ENST00000519559	ENST00000580976		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
Frame-shit	ENST00000522514	ENST00000333942		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
Frame-shit	ENST00000522514	ENST00000358365		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000522514	ENST00000583994		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000522514	ENST00000545287		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000522514	ENST00000354266		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000522514	ENST00000394692		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-5UTR	ENST00000522514	ENST00000581094		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
5CDS-intron	ENST00000522514	ENST00000580976		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-3CDS	ENST00000521344	ENST00000333942		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-3CDS	ENST00000521344	ENST00000358365		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000521344	ENST00000583994		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000521344	ENST00000545287		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000521344	ENST00000354266		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000521344	ENST00000394692		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-5UTR	ENST00000521344	ENST00000581094		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
intron-intron	ENST00000521344	ENST00000580976		TCGA	RV	BLCA	TCGA-DK-A1AC-01A	PCMTD1	chr8	52773405	-	RHOT1	chr17	30509776	+
Frame-shit	ENST00000409016	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409016	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409016	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409016	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000409016	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000409016	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409851	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409851	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409851	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409851	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000409851	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000409851	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000409463	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000409463	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000409463	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000409463	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-intron	ENST00000409463	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-intron	ENST00000409463	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000074304	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000074304	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000074304	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000074304	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000074304	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000074304	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000545415	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000545415	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000545415	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000545415	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000545415	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000545415	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409540	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409540	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409540	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000409540	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000409540	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000409540	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000523221	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000523221	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000523221	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
Frame-shit	ENST00000523221	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000523221	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000523221	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000467042	ENST00000264968		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000467042	ENST00000393487		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000467042	ENST00000414521		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-3CDS	ENST00000467042	ENST00000409391		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-intron	ENST00000467042	ENST00000461884		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
intron-intron	ENST00000467042	ENST00000495056		TCGA	RV	BLCA	TCGA-FD-A3SR-01A	INPP4A	chr2	99149958	+	MGAT4A	chr2	99242298	-
5CDS-intron	ENST00000522566	ENST00000521601		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000522566	ENST00000351513		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000358755	ENST00000521601		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000358755	ENST00000351513		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000523739	ENST00000521601		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000523739	ENST00000351513		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000540287	ENST00000521601		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000540287	ENST00000351513		TCGA	RV	BLCA	TCGA-LC-A66R-01A	FZD6	chr8	104312512	+	DPYS	chr8	105405219	-
Frame-shit	ENST00000395146	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
Frame-shit	ENST00000395146	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000307808	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000307808	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000307808	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000307808	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000307808	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000307808	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000544085	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000544085	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000544085	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000544085	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000544085	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000544085	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
3UTR-3CDS	ENST00000511996	ENST00000427191		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
3UTR-3CDS	ENST00000511996	ENST00000436978		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
3UTR-intron	ENST00000511996	ENST00000502971		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
3UTR-intron	ENST00000511996	ENST00000411767		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
3UTR-intron	ENST00000511996	ENST00000316707		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
3UTR-intron	ENST00000511996	ENST00000511467		TCGA	RV	BLCA	TCGA-4Z-AA87-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000412585	ENST00000233057		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000412585	ENST00000395127		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000412585	ENST00000405334		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000425848	ENST00000233057		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000425848	ENST00000395127		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000425848	ENST00000405334		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000450871	ENST00000233057		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000450871	ENST00000395127		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000450871	ENST00000405334		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000359635	ENST00000233057		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000359635	ENST00000395127		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000359635	ENST00000405334		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000435618	ENST00000233057		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000435618	ENST00000395127		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000435618	ENST00000405334		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000421349	ENST00000233057		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000421349	ENST00000395127		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000421349	ENST00000405334		TCGA	RV	BLCA	TCGA-GC-A3WC-01A	HLA-B	chr6	31321649	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000326181	ENST00000250894		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TRAF7	chr16	2214002	+	MAPK8IP3	chr16	1816905	+
Frame-shit	ENST00000326181	ENST00000356010		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TRAF7	chr16	2214002	+	MAPK8IP3	chr16	1816905	+
5CDS-intron	ENST00000326181	ENST00000568271		TCGA	RV	BLCA	TCGA-FD-A6TD-01A	TRAF7	chr16	2214002	+	MAPK8IP3	chr16	1816905	+
In-frame	ENST00000406516	ENST00000407835		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000406516	ENST00000437685		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000406516	ENST00000263201		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000406516	ENST00000483431		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000406516	ENST00000404724		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000444929	ENST00000407835		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000444929	ENST00000437685		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000444929	ENST00000263201		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000444929	ENST00000483431		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000444929	ENST00000404724		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000331728	ENST00000407835		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000331728	ENST00000437685		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000331728	ENST00000263201		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000331728	ENST00000483431		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000331728	ENST00000404724		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000333611	ENST00000407835		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000333611	ENST00000437685		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000333611	ENST00000263201		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000333611	ENST00000483431		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000333611	ENST00000404724		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000340552	ENST00000407835		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000340552	ENST00000437685		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
In-frame	ENST00000340552	ENST00000263201		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000340552	ENST00000483431		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000340552	ENST00000404724		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
intron-3CDS	ENST00000467301	ENST00000407835		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
intron-3CDS	ENST00000467301	ENST00000437685		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
intron-3CDS	ENST00000467301	ENST00000263201		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
intron-intron	ENST00000467301	ENST00000483431		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
intron-intron	ENST00000467301	ENST00000404724		TCGA	RV	BLCA	TCGA-DK-A3IN-01A	LIMK2	chr22	31664186	+	CDC45	chr22	19504050	+
5CDS-intron	ENST00000231498	ENST00000344204		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000231498	ENST00000537187		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000231498	ENST00000509967		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000231498	ENST00000515710		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000231498	ENST00000344135		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000381843	ENST00000344204		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000381843	ENST00000537187		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000381843	ENST00000509967		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000381843	ENST00000515710		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000381843	ENST00000344135		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000513532	ENST00000344204		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000513532	ENST00000537187		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000513532	ENST00000509967		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000513532	ENST00000515710		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
5CDS-intron	ENST00000513532	ENST00000344135		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
intron-intron	ENST00000502533	ENST00000344204		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
intron-intron	ENST00000502533	ENST00000537187		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
intron-intron	ENST00000502533	ENST00000509967		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
intron-intron	ENST00000502533	ENST00000515710		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
intron-intron	ENST00000502533	ENST00000344135		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	NUP155	chr5	37314300	-	TRIO	chr5	14531853	+
intron-3CDS	ENST00000361236	ENST00000375587		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
intron-3CDS	ENST00000361236	ENST00000375579		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
intron-3CDS	ENST00000361236	ENST00000375576		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
Frame-shit	ENST00000398136	ENST00000375587		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
Frame-shit	ENST00000398136	ENST00000375579		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
In-frame	ENST00000398136	ENST00000375576		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000532161	ENST00000375587		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000532161	ENST00000375579		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000532161	ENST00000375576		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000525577	ENST00000375587		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000525577	ENST00000375579		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000525577	ENST00000375576		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	TMEM123	chr11	102319543	-	CENPP	chr9	95373596	+
Frame-shit	ENST00000242057	ENST00000262067		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	AHR	chr7	17338953	+	TSPAN13	chr7	16815836	+
5CDS-3UTR	ENST00000242057	ENST00000466195		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	AHR	chr7	17338953	+	TSPAN13	chr7	16815836	+
intron-3CDS	ENST00000492120	ENST00000262067		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	AHR	chr7	17338953	+	TSPAN13	chr7	16815836	+
intron-3UTR	ENST00000492120	ENST00000466195		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	AHR	chr7	17338953	+	TSPAN13	chr7	16815836	+
Frame-shit	ENST00000430627	ENST00000346872		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000394189		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000439167		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000535189		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377944		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377945		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377952		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377958		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000346243		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000350532		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000351680		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000467757		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000439016		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000430627	ENST00000583368		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000346872		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000394189		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000439167		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000535189		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377944		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377945		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377952		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377958		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000346243		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000350532		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000351680		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000467757		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000439016		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000447079	ENST00000583368		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000346872		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000394189		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000439167		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000535189		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377944		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377945		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377952		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377958		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000346243		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000350532		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000351680		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000467757		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000439016		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000559545	ENST00000583368		TCGA	RV	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37657692	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000444631	ENST00000425394		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5UTR-3CDS	ENST00000444631	ENST00000440411		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5UTR-3CDS	ENST00000444631	ENST00000257931		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5UTR-3CDS	ENST00000444631	ENST00000548043		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5UTR-intron	ENST00000444631	ENST00000549090		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000336133	ENST00000425394		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000336133	ENST00000440411		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000336133	ENST00000257931		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000336133	ENST00000548043		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5CDS-intron	ENST00000336133	ENST00000549090		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000552080	ENST00000425394		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000552080	ENST00000440411		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000552080	ENST00000257931		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
In-frame	ENST00000552080	ENST00000548043		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5CDS-intron	ENST00000552080	ENST00000549090		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SARNP	chr12	56211450	-	PAN2	chr12	56722425	-
5CDS-intron	ENST00000338110	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000338110	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000338110	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000395248	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000395248	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000395248	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575627	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575627	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575627	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000566897	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000566897	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000566897	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000569545	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000569545	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000569545	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000563060	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000563060	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000563060	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000412304	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000412304	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000412304	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000564546	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000564546	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000564546	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000564595	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000564595	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000564595	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000569798	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000569798	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000569798	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395240	ENST00000360359		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395240	ENST00000535627		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000395240	ENST00000470698		TCGA	RV	BLCA	TCGA-FD-A3SM-01A	ALDOA	chr16	30081734	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000313949	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000313949	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371098	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371098	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371075	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371075	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371100	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371100	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371099	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371099	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371102	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371102	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000464624	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000464624	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000306120	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000306120	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371095	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371095	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371085	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371085	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000354359	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000354359	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000265620	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000265620	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000306090	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000306090	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371081	ENST00000216297		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371081	ENST00000555943		TCGA	RV	BLCA	TCGA-FD-A3SL-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
3UTR-5UTR	ENST00000467771	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
5CDS-5UTR	ENST00000271620	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
intron-5UTR	ENST00000271619	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
intron-5UTR	ENST00000368937	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
5UTR-5UTR	ENST00000368936	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
5UTR-5UTR	ENST00000368935	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
intron-5UTR	ENST00000368934	ENST00000368779		TCGA	RV	BLCA	TCGA-UY-A78N-01A	PRUNE	chr1	150990380	+	LCE2A	chr1	152671358	+
intron-3CDS	ENST00000308377	ENST00000480944		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
intron-3CDS	ENST00000308377	ENST00000394509		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
intron-3CDS	ENST00000308377	ENST00000536149		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
intron-3CDS	ENST00000308377	ENST00000435911		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
intron-3UTR	ENST00000308377	ENST00000586216		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
5UTR-3CDS	ENST00000394566	ENST00000480944		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
5UTR-3CDS	ENST00000394566	ENST00000394509		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
5UTR-3CDS	ENST00000394566	ENST00000536149		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
5UTR-3CDS	ENST00000394566	ENST00000435911		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
5UTR-3UTR	ENST00000394566	ENST00000586216		TCGA	RV	BLCA	TCGA-UY-A9PD-01A	SLFN11	chr17	33693966	-	CCL14	chr17	34310924	-
5CDS-3UTR	ENST00000337620	ENST00000380050		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000337620	ENST00000265741		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000337620	ENST00000406263		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000337620	ENST00000436577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000337620	ENST00000496279		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396386	ENST00000380050		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396386	ENST00000265741		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396386	ENST00000406263		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396386	ENST00000436577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000396386	ENST00000496279		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
3UTR-3UTR	ENST00000409747	ENST00000380050		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
3UTR-3UTR	ENST00000409747	ENST00000265741		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
3UTR-3UTR	ENST00000409747	ENST00000406263		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
3UTR-3UTR	ENST00000409747	ENST00000436577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
3UTR-intron	ENST00000409747	ENST00000496279		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000497498	ENST00000380050		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000497498	ENST00000265741		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000497498	ENST00000406263		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000497498	ENST00000436577		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
intron-intron	ENST00000497498	ENST00000496279		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	CBX3	chr7	26251376	+	CDK14	chr7	90836480	+
In-frame	ENST00000415807	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-5UTR	ENST00000415807	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-5UTR	ENST00000415807	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
In-frame	ENST00000336824	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-5UTR	ENST00000336824	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-5UTR	ENST00000336824	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
In-frame	ENST00000416957	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-5UTR	ENST00000416957	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-5UTR	ENST00000416957	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-3CDS	ENST00000392699	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000392699	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000392699	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-3CDS	ENST00000421757	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000421757	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000421757	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-3CDS	ENST00000423424	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000423424	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000423424	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-3CDS	ENST00000476794	ENST00000270221		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000476794	ENST00000596315		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
intron-5UTR	ENST00000476794	ENST00000597279		TCGA	RV	BLCA	TCGA-FD-A5BT-01A	FNDC3B	chr3	171969331	+	EMP3	chr19	48832609	+
5CDS-3UTR	ENST00000372727	ENST00000343295		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000372727	ENST00000502986		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000372727	ENST00000389060		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000414310	ENST00000343295		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000414310	ENST00000502986		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000414310	ENST00000389060		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000243918	ENST00000343295		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000243918	ENST00000502986		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000243918	ENST00000389060		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000426004	ENST00000343295		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000426004	ENST00000502986		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
5CDS-3UTR	ENST00000426004	ENST00000389060		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
3UTR-3UTR	ENST00000479779	ENST00000343295		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
3UTR-3UTR	ENST00000479779	ENST00000502986		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
3UTR-3UTR	ENST00000479779	ENST00000389060		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	SYS1	chr20	43994326	+	IDO2	chr8	39872766	+
In-frame	ENST00000372572	ENST00000372522		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
Frame-shit	ENST00000372572	ENST00000372521		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
Frame-shit	ENST00000372572	ENST00000537227		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
5CDS-intron	ENST00000372572	ENST00000497437		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
Frame-shit	ENST00000372573	ENST00000372522		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000372573	ENST00000372521		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000372573	ENST00000537227		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
5CDS-intron	ENST00000372573	ENST00000497437		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
Frame-shit	ENST00000361346	ENST00000372522		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000361346	ENST00000372521		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000361346	ENST00000537227		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
5CDS-intron	ENST00000361346	ENST00000497437		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
Frame-shit	ENST00000361776	ENST00000372522		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000361776	ENST00000372521		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000361776	ENST00000537227		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
5CDS-intron	ENST00000361776	ENST00000497437		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
Frame-shit	ENST00000545068	ENST00000372522		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000545068	ENST00000372521		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
In-frame	ENST00000545068	ENST00000537227		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
5CDS-intron	ENST00000545068	ENST00000497437		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
intron-3CDS	ENST00000372571	ENST00000372522		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
intron-3CDS	ENST00000372571	ENST00000372521		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
intron-3CDS	ENST00000372571	ENST00000537227		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
intron-intron	ENST00000372571	ENST00000497437		TCGA	RV	BLCA	TCGA-4Z-AA7Q-01A	FOXJ3	chr1	42693554	-	CCDC23	chr1	43273171	-
5CDS-intron	ENST00000513610	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000513610	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000507288	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000507288	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000274203	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000274203	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000515803	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000515803	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000427430	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000427430	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000505695	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000505695	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5UTR-intron	ENST00000512061	ENST00000468311		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
5UTR-intron	ENST00000512061	ENST00000368010		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	MYO10	chr5	16711017	-	PFDN2	chr1	161072165	-
Frame-shit	ENST00000458501	ENST00000327671		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
In-frame	ENST00000458501	ENST00000518672		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000458501	ENST00000524021		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000458501	ENST00000335589		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000458501	ENST00000518076		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000379644	ENST00000327671		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
In-frame	ENST00000379644	ENST00000518672		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000379644	ENST00000524021		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000379644	ENST00000335589		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000379644	ENST00000518076		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000297798	ENST00000327671		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
In-frame	ENST00000297798	ENST00000518672		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000297798	ENST00000524021		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000297798	ENST00000335589		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000297798	ENST00000518076		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000521576	ENST00000327671		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
In-frame	ENST00000521576	ENST00000518672		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000521576	ENST00000524021		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000521576	ENST00000335589		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
5CDS-intron	ENST00000521576	ENST00000518076		TCGA	RV	BLCA	TCGA-UY-A8OC-01A	HGSNAT	chr8	43037403	+	FUT10	chr8	33230322	-
Frame-shit	ENST00000261667	ENST00000264498		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	KPNA3	chr13	50321085	-	FGF2	chr4	123797476	+
Frame-shit	ENST00000261667	ENST00000608478		TCGA	RV	BLCA	TCGA-E5-A2PC-01A	KPNA3	chr13	50321085	-	FGF2	chr4	123797476	+
Frame-shit	ENST00000255977	ENST00000275884		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000255977	ENST00000537639		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000255977	ENST00000496613		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000255977	ENST00000492720		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000437223	ENST00000275884		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000437223	ENST00000537639		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000437223	ENST00000496613		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000437223	ENST00000492720		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000474576	ENST00000275884		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000474576	ENST00000537639		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000474576	ENST00000496613		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000474576	ENST00000492720		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000480552	ENST00000275884		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000480552	ENST00000537639		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000480552	ENST00000496613		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000480552	ENST00000492720		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000443720	ENST00000275884		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000443720	ENST00000537639		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000443720	ENST00000496613		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
Frame-shit	ENST00000443720	ENST00000492720		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000481705	ENST00000275884		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000481705	ENST00000537639		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000481705	ENST00000496613		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
5UTR-3CDS	ENST00000481705	ENST00000492720		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	MKRN1	chr7	140171683	-	DENND2A	chr7	140246739	-
In-frame	ENST00000320876	ENST00000261597		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SMCHD1	chr18	2656260	+	NDC80	chr18	2599018	+
In-frame	ENST00000261598	ENST00000261597		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SMCHD1	chr18	2656260	+	NDC80	chr18	2599018	+
intron-3CDS	ENST00000609587	ENST00000261597		TCGA	RV	BLCA	TCGA-ZF-A9RD-01A	SMCHD1	chr18	2656260	+	NDC80	chr18	2599018	+
In-frame	ENST00000373290	ENST00000360289		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
In-frame	ENST00000373290	ENST00000448642		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
In-frame	ENST00000373290	ENST00000404387		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
In-frame	ENST00000373290	ENST00000298649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
In-frame	ENST00000373290	ENST00000359426		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
5CDS-3UTR	ENST00000373290	ENST00000494253		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000459981	ENST00000360289		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000459981	ENST00000448642		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000459981	ENST00000404387		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000459981	ENST00000298649		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000459981	ENST00000359426		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
3UTR-3UTR	ENST00000459981	ENST00000494253		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	TSPAN15	chr10	71258152	+	HK1	chr10	71103583	+
intron-3CDS	ENST00000388999	ENST00000246551		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000388999	ENST00000437550		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
In-frame	ENST00000401500	ENST00000246551		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
In-frame	ENST00000401500	ENST00000437550		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
In-frame	ENST00000270301	ENST00000246551		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
In-frame	ENST00000270301	ENST00000437550		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000378860	ENST00000246551		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000378860	ENST00000437550		TCGA	RV	BLCA	TCGA-BT-A3PH-01A	WDR62	chr19	36575646	+	HCST	chr19	36394253	+
5CDS-5UTR	ENST00000598441	ENST00000301200		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	SNRNP70	chr19	49589818	+	CDC42EP5	chr19	54982906	-
5CDS-5UTR	ENST00000598441	ENST00000472703		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	SNRNP70	chr19	49589818	+	CDC42EP5	chr19	54982906	-
5CDS-5UTR	ENST00000221448	ENST00000301200		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	SNRNP70	chr19	49589818	+	CDC42EP5	chr19	54982906	-
5CDS-5UTR	ENST00000221448	ENST00000472703		TCGA	RV	BLCA	TCGA-XF-A9SV-01A	SNRNP70	chr19	49589818	+	CDC42EP5	chr19	54982906	-
5CDS-5UTR	ENST00000341776	ENST00000376511		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-5UTR	ENST00000341776	ENST00000484449		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000420949		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000549281		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000468706		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000449113		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000547333		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000475926		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000426299		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000551493		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000494003		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000383586		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000548899		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000478528		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000424446		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000552146		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000488513		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000429597		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000549865		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5CDS-intron	ENST00000341776	ENST00000482076		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-5UTR	ENST00000397311	ENST00000376511		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-5UTR	ENST00000397311	ENST00000484449		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000420949		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000549281		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000468706		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000449113		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000547333		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000475926		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000426299		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000551493		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000494003		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000383586		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000548899		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000478528		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000424446		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000552146		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000488513		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000429597		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000549865		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
5UTR-intron	ENST00000397311	ENST00000482076		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-5UTR	ENST00000541660	ENST00000376511		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-5UTR	ENST00000541660	ENST00000484449		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000420949		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000549281		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000468706		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000449113		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000547333		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000475926		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000426299		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000551493		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000494003		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000383586		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000548899		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000478528		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000424446		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000552146		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000488513		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000429597		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000549865		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000541660	ENST00000482076		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-5UTR	ENST00000474854	ENST00000376511		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-5UTR	ENST00000474854	ENST00000484449		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000420949		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000549281		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000468706		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000449113		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000547333		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000475926		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000426299		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000551493		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000494003		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000383586		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000548899		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000478528		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000424446		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000552146		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000488513		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000429597		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000549865		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000474854	ENST00000482076		TCGA	RV	BLCA	TCGA-K4-A3WV-01A	JARID2	chr6	15374483	+	PPP1R10	chr6	30584775	-
intron-intron	ENST00000373710	ENST00000468311		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000373710	ENST00000368010		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000536859	ENST00000468311		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000536859	ENST00000368010		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000373709	ENST00000468311		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000373709	ENST00000368010		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000536384	ENST00000468311		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000536384	ENST00000368010		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000491976	ENST00000468311		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
intron-intron	ENST00000491976	ENST00000368010		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	SERINC2	chr1	31886151	+	PFDN2	chr1	161072165	-
5UTR-intron	ENST00000361905	ENST00000471694		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000361905	ENST00000355354		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000361905	ENST00000361309		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000527636	ENST00000471694		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000527636	ENST00000355354		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000527636	ENST00000361309		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000527575	ENST00000471694		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000527575	ENST00000355354		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000527575	ENST00000361309		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000334310	ENST00000471694		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000334310	ENST00000355354		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5UTR-intron	ENST00000334310	ENST00000361309		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
intron-intron	ENST00000361985	ENST00000471694		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
intron-intron	ENST00000361985	ENST00000355354		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
intron-intron	ENST00000361985	ENST00000361309		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
intron-intron	ENST00000526600	ENST00000471694		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
intron-intron	ENST00000526600	ENST00000355354		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
intron-intron	ENST00000526600	ENST00000361309		TCGA	RV	BLCA	TCGA-XF-A9ST-01A	TEAD1	chr11	12697108	+	CD47	chr3	107779699	-
5CDS-3UTR	ENST00000372067	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000372067	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000417285	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000417285	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
intron-3UTR	ENST00000324450	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
intron-intron	ENST00000324450	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000413642	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000413642	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000372055	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000372055	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000482630	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000482630	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000425836	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000425836	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000372064	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000372064	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000372077	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000372077	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000520948	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000520948	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000523873	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000523873	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000523950	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000523950	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000518689	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000518689	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000523125	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000523125	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
intron-3UTR	ENST00000457104	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
intron-intron	ENST00000457104	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000518824	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000518824	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-3UTR	ENST00000230480	ENST00000289352		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000230480	ENST00000377727		TCGA	RV	BLCA	TCGA-XF-AAMG-01A	VEGFA	chr6	43746655	+	HIST1H4H	chr6	26281815	-
5CDS-intron	ENST00000407647	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000407647	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000407647	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000407647	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000407647	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000360113	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000360113	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000360113	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000360113	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000360113	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000406549	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000406549	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000406549	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000406549	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000406549	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000341313	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000341313	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000341313	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000341313	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000341313	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000403764	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000403764	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000403764	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000403764	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000403764	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000407854	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000407854	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000407854	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000407854	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000407854	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000471961	ENST00000475548		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000471961	ENST00000358743		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-intron	ENST00000471961	ENST00000347557		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000471961	ENST00000333137		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000471961	ENST00000404574		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	GAS2L1	chr22	29704728	+	SMTN	chr22	31500302	+
intron-intron	ENST00000368708	ENST00000354185		TCGA	RV	BLCA	TCGA-C4-A0F1-01A	S100A2	chr1	153533819	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000487430	ENST00000354185		TCGA	RV	BLCA	TCGA-C4-A0F1-01A	S100A2	chr1	153533819	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000497140	ENST00000354185		TCGA	RV	BLCA	TCGA-C4-A0F1-01A	S100A2	chr1	153533819	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000368710	ENST00000354185		TCGA	RV	BLCA	TCGA-C4-A0F1-01A	S100A2	chr1	153533819	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000368709	ENST00000354185		TCGA	RV	BLCA	TCGA-C4-A0F1-01A	S100A2	chr1	153533819	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000368707	ENST00000354185		TCGA	RV	BLCA	TCGA-C4-A0F1-01A	S100A2	chr1	153533819	-	DDX21	chr10	70723858	+
In-frame	ENST00000264819	ENST00000473997		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
In-frame	ENST00000264819	ENST00000346416		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
In-frame	ENST00000264819	ENST00000339269		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
In-frame	ENST00000264819	ENST00000357886		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
In-frame	ENST00000264819	ENST00000544843		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
5CDS-5UTR	ENST00000264819	ENST00000477105		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000592722	ENST00000473997		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000592722	ENST00000346416		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000592722	ENST00000339269		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000592722	ENST00000357886		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000592722	ENST00000544843		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
intron-5UTR	ENST00000592722	ENST00000477105		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	MIER2	chr19	325635	-	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000438493	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000438493	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000438493	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3CDS	ENST00000452682	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000452682	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000452682	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
3UTR-3CDS	ENST00000498586	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
3UTR-3UTR	ENST00000498586	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
3UTR-3UTR	ENST00000498586	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3CDS	ENST00000430396	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000430396	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000430396	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3CDS	ENST00000374087	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000374087	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000374087	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3CDS	ENST00000414907	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000414907	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000414907	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3CDS	ENST00000344348	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000344348	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000344348	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3CDS	ENST00000374082	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000374082	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000374082	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3CDS	ENST00000443446	ENST00000358559		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000443446	ENST00000474170		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000443446	ENST00000298239		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	NCOA4	chr10	51565296	+	MSMB	chr10	51555731	+
5CDS-intron	ENST00000357195	ENST00000536774		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000357195	ENST00000327441		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000357195	ENST00000539062		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000357195	ENST00000556451		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000357195	ENST00000396294		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000357195	ENST00000545536		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000357195	ENST00000537471		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000357195	ENST00000539174		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000345514	ENST00000536774		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000345514	ENST00000327441		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000345514	ENST00000539062		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000345514	ENST00000556451		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000345514	ENST00000396294		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000345514	ENST00000545536		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-5UTR	ENST00000345514	ENST00000537471		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
5CDS-intron	ENST00000345514	ENST00000539174		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-intron	ENST00000443726	ENST00000536774		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-intron	ENST00000443726	ENST00000327441		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-intron	ENST00000443726	ENST00000539062		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-5UTR	ENST00000443726	ENST00000556451		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-5UTR	ENST00000443726	ENST00000396294		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-5UTR	ENST00000443726	ENST00000545536		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-5UTR	ENST00000443726	ENST00000537471		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
intron-intron	ENST00000443726	ENST00000539174		TCGA	RV	BLCA	TCGA-C4-A0F7-01A	BCL11B	chr14	99723808	-	MIPOL1	chr14	37688758	+
Frame-shit	ENST00000307602	ENST00000309982		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000307602	ENST00000438105		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000307602	ENST00000297574		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000307602	ENST00000330955		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000307602	ENST00000306391		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000307602	ENST00000523754		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000524839	ENST00000309982		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
intron-intron	ENST00000524839	ENST00000438105		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
intron-intron	ENST00000524839	ENST00000297574		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
intron-intron	ENST00000524839	ENST00000330955		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
intron-intron	ENST00000524839	ENST00000306391		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
intron-intron	ENST00000524839	ENST00000523754		TCGA	RV	BLCA	TCGA-K4-A6MB-01A	HOOK3	chr8	42780772	+	BAALC	chr8	104225147	+
Frame-shit	ENST00000395811	ENST00000581396		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000379504		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000318094		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000395739		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000535933		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000540946		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000542206		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395811	ENST00000478943		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
5CDS-intron	ENST00000395811	ENST00000577517		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000581396		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000379504		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000318094		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000395739		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000535933		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000540946		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000542206		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000444976	ENST00000478943		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
5CDS-intron	ENST00000444976	ENST00000577517		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000581396		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000379504		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000318094		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000395739		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000535933		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000540946		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000542206		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395804	ENST00000478943		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
5CDS-intron	ENST00000395804	ENST00000577517		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000581396		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000379504		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000318094		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000395739		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000535933		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000540946		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000542206		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000341712	ENST00000478943		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
5CDS-intron	ENST00000341712	ENST00000577517		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000581396		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000379504		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000318094		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000395739		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000535933		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000540946		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000542206		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000395806	ENST00000478943		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
5CDS-intron	ENST00000395806	ENST00000577517		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000581396		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000379504		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000318094		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000395739		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000535933		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000540946		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000542206		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-3CDS	ENST00000395807	ENST00000478943		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
3UTR-intron	ENST00000395807	ENST00000577517		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	TOM1L2	chr17	17766162	-
Frame-shit	ENST00000301587	ENST00000476258		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000301587	ENST00000405458		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000301587	ENST00000409753		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000301587	ENST00000482348		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000301587	ENST00000356033		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000301587	ENST00000470924		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000301587	ENST00000481647		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000301587	ENST00000392566		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-3UTR	ENST00000301587	ENST00000581874		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000301587	ENST00000465454		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000344546	ENST00000476258		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000344546	ENST00000405458		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000344546	ENST00000409753		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
Frame-shit	ENST00000344546	ENST00000482348		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000344546	ENST00000356033		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000344546	ENST00000470924		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000344546	ENST00000481647		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000344546	ENST00000392566		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-3UTR	ENST00000344546	ENST00000581874		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000344546	ENST00000465454		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	ATP5H	chr17	73038276	-	HN1	chr17	73142779	-
5CDS-intron	ENST00000053867	ENST00000262577		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	GRN	chr17	42428168	+	ZC3H3	chr8	144567117	-
intron-intron	ENST00000589265	ENST00000262577		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	GRN	chr17	42428168	+	ZC3H3	chr8	144567117	-
3UTR-intron	ENST00000589923	ENST00000262577		TCGA	RV	BLCA	TCGA-S5-A6DX-01A	GRN	chr17	42428168	+	ZC3H3	chr8	144567117	-
In-frame	ENST00000283882	ENST00000566780		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
In-frame	ENST00000283882	ENST00000406884		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000283882	ENST00000539474		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000283882	ENST00000402655		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000283882	ENST00000408984		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000283882	ENST00000355860		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000283882	ENST00000565791		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000283882	ENST00000569818		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000564286	ENST00000566780		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000564286	ENST00000406884		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000564286	ENST00000539474		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000564286	ENST00000402655		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-intron	ENST00000564286	ENST00000408984		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-intron	ENST00000564286	ENST00000355860		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-intron	ENST00000564286	ENST00000565791		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
intron-intron	ENST00000564286	ENST00000569818		TCGA	RV	BLCA	TCGA-XF-A9T0-01A	CFDP1	chr16	75428988	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000309311	ENST00000513761		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000347613		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000360642		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000504131		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000506924		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000513761		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000347613		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000360642		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000504131		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000506924		TCGA	RV	BLCA	TCGA-CF-A27C-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-5UTR	ENST00000441293	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000441293	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000314728	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000314728	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000347697	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000347697	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000395618	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000395618	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000575595	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
5UTR-5UTR	ENST00000575595	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000395620	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000395620	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000395626	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000395626	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000571254	ENST00000583088		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000571254	ENST00000331718		TCGA	RV	BLCA	TCGA-BT-A20Q-01A	EPN2	chr17	19140844	+	KCNJ12	chr17	21311831	+
Frame-shit	ENST00000362003	ENST00000506838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000362003	ENST00000505477		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000362003	ENST00000511290		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000362003	ENST00000400159		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000400151	ENST00000506838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000400151	ENST00000505477		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000400151	ENST00000511290		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000400151	ENST00000400159		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000482726	ENST00000506838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000482726	ENST00000505477		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000482726	ENST00000511290		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000482726	ENST00000400159		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000470161	ENST00000506838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000470161	ENST00000505477		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000470161	ENST00000511290		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000470161	ENST00000400159		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000521023	ENST00000506838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000521023	ENST00000505477		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000521023	ENST00000511290		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000521023	ENST00000400159		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000505655	ENST00000506838		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000505655	ENST00000505477		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000505655	ENST00000511290		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
Frame-shit	ENST00000505655	ENST00000400159		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	PCGF3	chr4	738476	+	MYL5	chr4	674298	+
intron-3CDS	ENST00000608456	ENST00000304877		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608456	ENST00000534000		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608456	ENST00000368402		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608456	ENST00000368388		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608456	ENST00000527711		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608456	ENST00000528193		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608456	ENST00000532429		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608456	ENST00000534199		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608456	ENST00000392482		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608456	ENST00000524679		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608456	ENST00000530868		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000368377	ENST00000304877		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000368377	ENST00000534000		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000368377	ENST00000368402		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000368377	ENST00000368388		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000368377	ENST00000527711		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000368377	ENST00000528193		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000368377	ENST00000532429		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000368377	ENST00000534199		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000368377	ENST00000392482		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000368377	ENST00000524679		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000368377	ENST00000530868		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608295	ENST00000304877		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608295	ENST00000534000		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608295	ENST00000368402		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608295	ENST00000368388		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3CDS	ENST00000608295	ENST00000527711		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608295	ENST00000528193		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608295	ENST00000532429		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608295	ENST00000534199		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608295	ENST00000392482		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608295	ENST00000524679		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
intron-3UTR	ENST00000608295	ENST00000530868		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000398153	ENST00000304877		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000398153	ENST00000534000		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
In-frame	ENST00000398153	ENST00000368402		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000398153	ENST00000368388		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
In-frame	ENST00000398153	ENST00000527711		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000398153	ENST00000528193		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000398153	ENST00000532429		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000398153	ENST00000534199		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000398153	ENST00000392482		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000398153	ENST00000524679		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000398153	ENST00000530868		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000608284	ENST00000304877		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000608284	ENST00000534000		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
In-frame	ENST00000608284	ENST00000368402		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000608284	ENST00000368388		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
In-frame	ENST00000608284	ENST00000527711		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000608284	ENST00000528193		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000608284	ENST00000532429		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000608284	ENST00000534199		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000608284	ENST00000392482		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000608284	ENST00000524679		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
5CDS-3UTR	ENST00000608284	ENST00000530868		TCGA	RV	BLCA	TCGA-DK-A1A7-01A	HDDC2	chr6	125619860	-	TPD52L1	chr6	125583980	+
Frame-shit	ENST00000265734	ENST00000440868		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
Frame-shit	ENST00000265734	ENST00000341723		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
Frame-shit	ENST00000265734	ENST00000394468		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
Frame-shit	ENST00000265734	ENST00000453812		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
5CDS-5UTR	ENST00000265734	ENST00000492616		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
Frame-shit	ENST00000424848	ENST00000440868		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
In-frame	ENST00000424848	ENST00000341723		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
In-frame	ENST00000424848	ENST00000394468		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
In-frame	ENST00000424848	ENST00000453812		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
5CDS-5UTR	ENST00000424848	ENST00000492616		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
intron-3CDS	ENST00000491250	ENST00000440868		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
intron-3CDS	ENST00000491250	ENST00000341723		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
intron-3CDS	ENST00000491250	ENST00000394468		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
intron-3CDS	ENST00000491250	ENST00000453812		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
intron-5UTR	ENST00000491250	ENST00000492616		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	CDK6	chr7	92404010	-	HEPACAM2	chr7	92821676	-
5UTR-5UTR	ENST00000218089	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000218089	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
3UTR-5UTR	ENST00000469481	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
3UTR-5UTR	ENST00000469481	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000354548	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000354548	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371160	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371160	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371157	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371157	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371145	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371145	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371144	ENST00000465301		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000371144	ENST00000540313		TCGA	RV	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123094716	+	RGAG1	chrX	109693795	+
Frame-shit	ENST00000579146	ENST00000425538		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000579146	ENST00000343344		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000579146	ENST00000395988		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000300658	ENST00000425538		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000300658	ENST00000343344		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000300658	ENST00000395988		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
intron-3CDS	ENST00000378011	ENST00000425538		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
intron-3CDS	ENST00000378011	ENST00000343344		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
intron-3UTR	ENST00000378011	ENST00000395988		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000429199	ENST00000425538		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000429199	ENST00000343344		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000429199	ENST00000395988		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PGAP3	chr17	37840850	-	MYOCD	chr17	12639478	+
In-frame	ENST00000356093	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000356093	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000356093	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000356093	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000398863	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000398863	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000398863	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000398863	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000343067	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000343067	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000343067	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000343067	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000349460	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000349460	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000349460	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000349460	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000373800	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000373800	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000373800	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000373800	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-3CDS	ENST00000347529	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-3CDS	ENST00000347529	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-intron	ENST00000347529	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-intron	ENST00000347529	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000373798	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000373798	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000373798	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000373798	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000373797	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
In-frame	ENST00000373797	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000373797	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
5CDS-intron	ENST00000373797	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-3CDS	ENST00000460378	ENST00000458501		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-3CDS	ENST00000460378	ENST00000379644		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-intron	ENST00000460378	ENST00000297798		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
intron-intron	ENST00000460378	ENST00000521576		TCGA	RV	BLCA	TCGA-2F-A9KP-01A	EPB41	chr1	29323831	+	HGSNAT	chr8	43013718	+
Frame-shit	ENST00000537871	ENST00000442011		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
Frame-shit	ENST00000537871	ENST00000305126		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
5CDS-5UTR	ENST00000537871	ENST00000508076		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
5CDS-intron	ENST00000537871	ENST00000504185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
intron-3CDS	ENST00000439013	ENST00000442011		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
intron-3CDS	ENST00000439013	ENST00000305126		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
intron-5UTR	ENST00000439013	ENST00000508076		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
intron-intron	ENST00000439013	ENST00000504185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
Frame-shit	ENST00000255688	ENST00000442011		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
Frame-shit	ENST00000255688	ENST00000305126		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
5CDS-5UTR	ENST00000255688	ENST00000508076		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
5CDS-intron	ENST00000255688	ENST00000504185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
In-frame	ENST00000354445	ENST00000442011		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
In-frame	ENST00000354445	ENST00000305126		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
5CDS-5UTR	ENST00000354445	ENST00000508076		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
5CDS-intron	ENST00000354445	ENST00000504185		TCGA	RV	BLCA	TCGA-E7-A7DV-01A	RARRES3	chr11	63313929	+	TGFBI	chr5	135396523	+
Frame-shit	ENST00000400274	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000400274	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000400274	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
intron-3CDS	ENST00000427143	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
intron-intron	ENST00000427143	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
intron-intron	ENST00000427143	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000318711	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000318711	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000318711	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000417564	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000417564	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000417564	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000457905	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000457905	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000457905	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000466639	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000466639	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000466639	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000435722	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000435722	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000435722	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
intron-3CDS	ENST00000479654	ENST00000378611		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
intron-intron	ENST00000479654	ENST00000299578		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
intron-intron	ENST00000479654	ENST00000444657		TCGA	RV	BLCA	TCGA-FD-A5C0-01A	DIP2A	chr21	47904741	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000396368	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000396368	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000396368	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000396368	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-3UTR	ENST00000396368	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
Frame-shit	ENST00000540441	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000540441	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000540441	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000540441	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-3UTR	ENST00000540441	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
In-frame	ENST00000344181	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000344181	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000344181	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000344181	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-3UTR	ENST00000344181	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
Frame-shit	ENST00000551742	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000551742	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000551742	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000551742	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-3UTR	ENST00000551742	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
Frame-shit	ENST00000602337	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000602337	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000602337	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000602337	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-3UTR	ENST00000602337	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
Frame-shit	ENST00000548025	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000548025	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000548025	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-intron	ENST00000548025	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
5CDS-3UTR	ENST00000548025	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
intron-3CDS	ENST00000547936	ENST00000320394		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
intron-intron	ENST00000547936	ENST00000564186		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
intron-intron	ENST00000547936	ENST00000541926		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
intron-intron	ENST00000547936	ENST00000433597		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
intron-3UTR	ENST00000547936	ENST00000562762		TCGA	RV	BLCA	TCGA-BT-A2LB-01A	KIAA0430	chr16	15724189	-	IQCK	chr16	19867809	+
Frame-shit	ENST00000247843	ENST00000261267		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	YEATS4	chr12	69759664	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000247843	ENST00000549690		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	YEATS4	chr12	69759664	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000247843	ENST00000548839		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	YEATS4	chr12	69759664	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000548020	ENST00000261267		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	YEATS4	chr12	69759664	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000548020	ENST00000549690		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	YEATS4	chr12	69759664	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000548020	ENST00000548839		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	YEATS4	chr12	69759664	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000380680	ENST00000378034		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	UBL3	chr13	30423649	-	CKAP2	chr13	53030658	+
Frame-shit	ENST00000380680	ENST00000258607		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	UBL3	chr13	30423649	-	CKAP2	chr13	53030658	+
Frame-shit	ENST00000380680	ENST00000378037		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	UBL3	chr13	30423649	-	CKAP2	chr13	53030658	+
5CDS-5UTR	ENST00000380680	ENST00000490903		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	UBL3	chr13	30423649	-	CKAP2	chr13	53030658	+
5CDS-intron	ENST00000383329	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000383329	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000383329	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000376228	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000376228	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000376228	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000423509	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000423509	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000423509	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000430940	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000430940	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000430940	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000422726	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000422726	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000422726	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000424832	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000424832	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000424832	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458192	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458192	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458192	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000422921	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000422921	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000422921	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000456487	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000456487	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000456487	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000420206	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000420206	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000420206	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000495725	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000495725	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000495725	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419135	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419135	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419135	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000433153	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000433153	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000433153	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000429840	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000429840	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000429840	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000457903	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000457903	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000457903	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000479546	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000479546	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000479546	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400395	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400395	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400395	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383323	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383323	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383323	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000434884	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000434884	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000434884	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400394	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400394	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400394	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000494871	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000494871	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000494871	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000453809	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000453809	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000453809	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000414249	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000414249	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000414249	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419590	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419590	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419590	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000438171	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000438171	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000438171	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552865	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552865	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552865	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000495898	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000495898	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000495898	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383483	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383483	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383483	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383487	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383487	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000383487	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458668	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458668	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458668	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400341	ENST00000233057		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400341	ENST00000395127		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000400341	ENST00000405334		TCGA	RV	BLCA	TCGA-DK-A6B2-01A	HLA-C	chr6	31236528	-	EIF2AK2	chr2	37342384	-
intron-3CDS	ENST00000391826	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	IL4I1	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000595948	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	IL4I1	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000341114	ENST00000335523		TCGA	RV	BLCA	TCGA-4Z-AA7M-01A	IL4I1	chr19	50430951	-	VSTM2B	chr19	30054753	+
intron-intron	ENST00000397010	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
intron-intron	ENST00000309576	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
intron-intron	ENST00000397015	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
5UTR-intron	ENST00000397012	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
5UTR-intron	ENST00000397026	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
intron-intron	ENST00000397000	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
intron-intron	ENST00000539812	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
intron-intron	ENST00000287820	ENST00000432424		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	PPARG	chr3	12330633	+	SYN2	chr3	12228869	+
Frame-shit	ENST00000353139	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
intron-3CDS	ENST00000360679	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
In-frame	ENST00000394406	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
intron-3CDS	ENST00000335166	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
Frame-shit	ENST00000416895	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
intron-3CDS	ENST00000361253	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
In-frame	ENST00000588142	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
intron-3CDS	ENST00000589665	ENST00000302495		TCGA	RV	BLCA	TCGA-FJ-A3ZE-01A	ACACA	chr17	35687113	-	HTRA4	chr8	38845455	+
Frame-shit	ENST00000520539	ENST00000285402		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
5CDS-intron	ENST00000520539	ENST00000518835		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
Frame-shit	ENST00000220959	ENST00000285402		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
5CDS-intron	ENST00000220959	ENST00000518835		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000518205	ENST00000285402		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
intron-intron	ENST00000518205	ENST00000518835		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
Frame-shit	ENST00000521922	ENST00000285402		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
5CDS-intron	ENST00000521922	ENST00000518835		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000519528	ENST00000285402		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
intron-intron	ENST00000519528	ENST00000518835		TCGA	RV	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	ODF1	chr8	103572680	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5CDS-intron	ENST00000315238	ENST00000360359		TCGA	RV	BLCA	TCGA-CU-A3KJ-01A	CALML3	chr10	5568225	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000315238	ENST00000535627		TCGA	RV	BLCA	TCGA-CU-A3KJ-01A	CALML3	chr10	5568225	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000315238	ENST00000470698		TCGA	RV	BLCA	TCGA-CU-A3KJ-01A	CALML3	chr10	5568225	+	ANKS1A	chr6	34977682	+
5UTR-3CDS	ENST00000005257	ENST00000350811		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000457475		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000395749		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000502837		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000440254		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000358707		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000353625		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000258682		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000347193		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000346990		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-3CDS	ENST00000005257	ENST00000395747		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
5UTR-5UTR	ENST00000005257	ENST00000489429		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000350811		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000457475		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000395749		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000502837		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000440254		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000358707		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000353625		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000258682		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000347193		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000346990		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-3CDS	ENST00000468201	ENST00000395747		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
3UTR-5UTR	ENST00000468201	ENST00000489429		TCGA	RV	BLCA	TCGA-ZF-AA5H-01A	RALA	chr7	39663424	+	CAMK2B	chr7	44260500	-
In-frame	ENST00000252699	ENST00000593149		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000252699	ENST00000248342		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000593062		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000538434		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000588934		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000545173		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000592558		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000424234	ENST00000593149		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000424234	ENST00000248342		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000593062		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000538434		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000588934		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000545173		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000592558		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000390009	ENST00000593149		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000390009	ENST00000248342		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000593062		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000538434		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000588934		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000545173		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000592558		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-3CDS	ENST00000497637	ENST00000593149		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-3CDS	ENST00000497637	ENST00000248342		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000593062		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000538434		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000588934		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000545173		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000592558		TCGA	RV	BLCA	TCGA-E7-A541-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
Frame-shit	ENST00000307886	ENST00000338369		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
Frame-shit	ENST00000307886	ENST00000357519		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
Frame-shit	ENST00000307886	ENST00000533045		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
5CDS-intron	ENST00000307886	ENST00000426652		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
Frame-shit	ENST00000528419	ENST00000338369		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
Frame-shit	ENST00000528419	ENST00000357519		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
Frame-shit	ENST00000528419	ENST00000533045		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
5CDS-intron	ENST00000528419	ENST00000426652		TCGA	RV	BLCA	TCGA-E7-A8O8-01A	CTSW	chr11	65647757	+	FIBP	chr11	65653134	-
3UTR-3UTR	ENST00000318607	ENST00000395996		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000318607	ENST00000358544		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000318607	ENST00000357162		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000318607	ENST00000355155		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000318607	ENST00000441350		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000318607	ENST00000521932		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000519004	ENST00000395996		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000519004	ENST00000358544		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000519004	ENST00000357162		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000519004	ENST00000355155		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000519004	ENST00000441350		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000519004	ENST00000521932		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000522387	ENST00000395996		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000522387	ENST00000358544		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-3UTR	ENST00000522387	ENST00000357162		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000522387	ENST00000355155		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000522387	ENST00000441350		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
3UTR-intron	ENST00000522387	ENST00000521932		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
intron-3UTR	ENST00000519596	ENST00000395996		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
intron-3UTR	ENST00000519596	ENST00000358544		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
intron-3UTR	ENST00000519596	ENST00000357162		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
intron-intron	ENST00000519596	ENST00000355155		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
intron-intron	ENST00000519596	ENST00000441350		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
intron-intron	ENST00000519596	ENST00000521932		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	PABPC1	chr8	101716525	-	VPS13B	chr8	100779002	+
In-frame	ENST00000264012	ENST00000265689		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5CDS-intron	ENST00000264012	ENST00000533728		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5CDS-intron	ENST00000264012	ENST00000356135		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
In-frame	ENST00000429102	ENST00000265689		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5CDS-intron	ENST00000429102	ENST00000533728		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5CDS-intron	ENST00000429102	ENST00000356135		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
In-frame	ENST00000581171	ENST00000265689		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5CDS-intron	ENST00000581171	ENST00000533728		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5CDS-intron	ENST00000581171	ENST00000356135		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
intron-3CDS	ENST00000569117	ENST00000265689		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
intron-intron	ENST00000569117	ENST00000533728		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
intron-intron	ENST00000569117	ENST00000356135		TCGA	RV	BLCA	TCGA-DK-A6AV-01A	CDH3	chr16	68718727	+	CHKA	chr11	67836404	-
5UTR-intron	ENST00000395957	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
5UTR-intron	ENST00000395957	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
5UTR-intron	ENST00000395958	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
5UTR-intron	ENST00000395958	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000457309	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000457309	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395956	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395956	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000353245	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000353245	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000522542	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000522542	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
5UTR-intron	ENST00000521309	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
5UTR-intron	ENST00000521309	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000522819	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000522819	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395953	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395953	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395948	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395948	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395951	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000395951	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000419477	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000419477	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000492736	ENST00000538401		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
intron-intron	ENST00000492736	ENST00000265643		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	YWHAZ	chr8	101964157	-	GAL	chr11	68452392	+
5CDS-5UTR	ENST00000340473	ENST00000368715		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
5CDS-5UTR	ENST00000340473	ENST00000481009		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
5CDS-5UTR	ENST00000340473	ENST00000354332		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
5CDS-5UTR	ENST00000340473	ENST00000368716		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
5CDS-5UTR	ENST00000340473	ENST00000368714		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
intron-5UTR	ENST00000494087	ENST00000368715		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
intron-5UTR	ENST00000494087	ENST00000481009		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
intron-5UTR	ENST00000494087	ENST00000354332		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
intron-5UTR	ENST00000494087	ENST00000368716		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
intron-5UTR	ENST00000494087	ENST00000368714		TCGA	RV	BLCA	TCGA-DK-A1AD-01A	GTF2F2	chr13	45694856	+	S100A4	chr1	153517285	-
In-frame	ENST00000546591	ENST00000394023		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000546591	ENST00000550164		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000546591	ENST00000347471		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000546591	ENST00000267064		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
5CDS-5UTR	ENST00000546591	ENST00000550859		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000501597	ENST00000394023		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000501597	ENST00000550164		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000501597	ENST00000347471		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
In-frame	ENST00000501597	ENST00000267064		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
5CDS-5UTR	ENST00000501597	ENST00000550859		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
3UTR-3CDS	ENST00000552314	ENST00000394023		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
3UTR-3CDS	ENST00000552314	ENST00000550164		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
3UTR-3CDS	ENST00000552314	ENST00000347471		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
3UTR-3CDS	ENST00000552314	ENST00000267064		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
3UTR-5UTR	ENST00000552314	ENST00000550859		TCGA	RV	BLCA	TCGA-DK-AA6P-01A	RPL41	chr12	56510583	+	SMARCC2	chr12	56580024	-
5CDS-3UTR	ENST00000455147	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-intron	ENST00000455147	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-3UTR	ENST00000266563	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-intron	ENST00000266563	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
intron-3UTR	ENST00000545220	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
intron-intron	ENST00000545220	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-3UTR	ENST00000434354	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-intron	ENST00000434354	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-3UTR	ENST00000420616	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-intron	ENST00000420616	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-3UTR	ENST00000412720	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-intron	ENST00000412720	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-3UTR	ENST00000266564	ENST00000389362		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
5CDS-intron	ENST00000266564	ENST00000545829		TCGA	RV	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB2	chr12	11544582	-
Frame-shit	ENST00000247833	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000247833	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000247833	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000247833	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
Frame-shit	ENST00000378815	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000378815	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000378815	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000378815	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5UTR-3CDS	ENST00000325555	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5UTR-intron	ENST00000325555	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5UTR-intron	ENST00000325555	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5UTR-intron	ENST00000325555	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
Frame-shit	ENST00000483530	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000483530	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000483530	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000483530	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
Frame-shit	ENST00000550536	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000550536	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000550536	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000550536	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
Frame-shit	ENST00000362025	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000362025	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000362025	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
5CDS-intron	ENST00000362025	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-3CDS	ENST00000551641	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000551641	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000551641	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000551641	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-3CDS	ENST00000553099	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000553099	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000553099	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000553099	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-3CDS	ENST00000550847	ENST00000229179		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000550847	ENST00000378905		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000550847	ENST00000539906		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
intron-intron	ENST00000550847	ENST00000401003		TCGA	RV	BLCA	TCGA-BT-A0S7-01A	RAB3IP	chr12	70150443	+	NUP107	chr12	69125387	+
In-frame	ENST00000371253	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	GPR110	chr6	46989694	-	TNFRSF21	chr6	47254331	-
5UTR-3CDS	ENST00000449332	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	GPR110	chr6	46989694	-	TNFRSF21	chr6	47254331	-
intron-3CDS	ENST00000283297	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	GPR110	chr6	46989694	-	TNFRSF21	chr6	47254331	-
In-frame	ENST00000371243	ENST00000296861		TCGA	RV	BLCA	TCGA-DK-AA6S-01A	GPR110	chr6	46989694	-	TNFRSF21	chr6	47254331	-
In-frame	ENST00000226299	ENST00000381341		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	LAP3	chr4	17583437	+	DDX1	chr2	15746274	+
In-frame	ENST00000226299	ENST00000233084		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	LAP3	chr4	17583437	+	DDX1	chr2	15746274	+
In-frame	ENST00000606142	ENST00000381341		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	LAP3	chr4	17583437	+	DDX1	chr2	15746274	+
In-frame	ENST00000606142	ENST00000233084		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	LAP3	chr4	17583437	+	DDX1	chr2	15746274	+
intron-3CDS	ENST00000503467	ENST00000381341		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	LAP3	chr4	17583437	+	DDX1	chr2	15746274	+
intron-3CDS	ENST00000503467	ENST00000233084		TCGA	RV	BLCA	TCGA-G2-A2EF-01A	LAP3	chr4	17583437	+	DDX1	chr2	15746274	+
In-frame	ENST00000262077	ENST00000344537		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000262077	ENST00000355917		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000262077	ENST00000338950		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000262077	ENST00000462989		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000537253	ENST00000344537		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000537253	ENST00000355917		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000537253	ENST00000338950		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
In-frame	ENST00000537253	ENST00000462989		TCGA	RV	BLCA	TCGA-PQ-A6FI-01A	NUP153	chr6	17646298	-	DTNBP1	chr6	15524900	-
Frame-shit	ENST00000258534	ENST00000229179		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
Frame-shit	ENST00000258534	ENST00000378905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
Frame-shit	ENST00000258534	ENST00000539906		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000258534	ENST00000401003		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
Frame-shit	ENST00000544152	ENST00000229179		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
Frame-shit	ENST00000544152	ENST00000378905		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
Frame-shit	ENST00000544152	ENST00000539906		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000544152	ENST00000401003		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	DRAM1	chr12	102291708	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000513024	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000513024	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000513024	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000513024	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000513024	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5UTR-3CDS	ENST00000509638	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5UTR-3CDS	ENST00000509638	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5UTR-intron	ENST00000509638	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5UTR-intron	ENST00000509638	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5UTR-intron	ENST00000509638	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000508501	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000508501	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000508501	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000508501	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000508501	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000512946	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000512946	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512946	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512946	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512946	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000313860	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000313860	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000313860	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000313860	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000313860	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000512632	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000512632	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512632	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512632	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512632	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000512820	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000512820	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512820	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512820	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
5CDS-intron	ENST00000512820	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000503057	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000503057	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000503057	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000503057	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000503057	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000511496	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000511496	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000511496	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000511496	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000511496	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000514096	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000514096	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000514096	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000514096	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000514096	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000509277	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000509277	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000509277	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000509277	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000509277	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000396595	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000396595	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000396595	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000396595	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000396595	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000381753	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000381753	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000381753	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000381753	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000381753	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000509454	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000509454	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000509454	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000509454	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000509454	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000515785	ENST00000503431		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-3CDS	ENST00000515785	ENST00000284440		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000515785	ENST00000504818		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000515785	ENST00000508768		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
intron-intron	ENST00000515785	ENST00000512788		TCGA	RV	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41265242	+
In-frame	ENST00000288398	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000288398	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000288398	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000358278	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000358278	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000358278	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000560445	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
intron-intron	ENST00000560445	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
intron-intron	ENST00000560445	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000403994	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000403994	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000403994	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000357980	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000357980	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000357980	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000559556	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000559556	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000559556	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000559397	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000559397	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000559397	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000267996	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000267996	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000267996	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000334895	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000334895	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000334895	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000404484	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000404484	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000404484	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
Frame-shit	ENST00000560959	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000560959	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000560959	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000559281	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000559281	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000559281	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
In-frame	ENST00000317516	ENST00000389048		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000317516	ENST00000431873		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000317516	ENST00000498037		TCGA	RV	BLCA	TCGA-GV-A3QG-01A	TPM1	chr15	63354844	+	ALK	chr2	29446394	-
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	BLCA	TCGA-BL-A3JM-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000361570	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000361570	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000361570	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000361570	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000361570	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000361570	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000361570	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000304494	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000304494	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000304494	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000304494	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000304494	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000304494	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000304494	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000579755	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000579755	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000579755	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000579755	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000579755	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000579755	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000579755	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000579122	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000579122	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000579122	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000579122	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000579122	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000579122	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000579122	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000578845	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000578845	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000578845	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000578845	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000578845	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000578845	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000578845	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000530628	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000530628	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000530628	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000530628	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000530628	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000530628	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000530628	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000498124	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000498124	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000498124	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000498124	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000498124	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000498124	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000498124	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000498628	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000498628	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000498628	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000498628	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000498628	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000498628	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000498628	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000494262	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000494262	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000494262	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000494262	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000494262	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000494262	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000494262	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000446177	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000446177	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000446177	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000446177	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
In-frame	ENST00000446177	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000446177	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5CDS-intron	ENST00000446177	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000479692	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000479692	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000479692	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000479692	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000479692	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000479692	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000479692	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000497750	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000497750	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000497750	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000497750	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000497750	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000497750	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000497750	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000470819	ENST00000401084		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000470819	ENST00000264203		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000470819	ENST00000375142		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000470819	ENST00000433834		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-3CDS	ENST00000470819	ENST00000264202		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000470819	ENST00000482808		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
intron-intron	ENST00000470819	ENST00000375144		TCGA	RV	BLCA	TCGA-E7-A6MD-01A	CDKN2A	chr9	21974677	-	CAPZB	chr1	19671746	-
5UTR-5UTR	ENST00000367505	ENST00000372969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000367505	ENST00000372967		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000367503	ENST00000372969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000367503	ENST00000372967		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000438092	ENST00000372969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000438092	ENST00000372967		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000275233	ENST00000372969		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000275233	ENST00000372967		TCGA	RV	BLCA	TCGA-GD-A2C5-01A	SHPRH	chr6	146285293	-	NDUFS5	chr1	39494395	+
5CDS-3UTR	ENST00000273038	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
5CDS-3UTR	ENST00000273038	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
5CDS-3UTR	ENST00000273038	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000430365	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000430365	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000430365	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000404339	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000404339	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000404339	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000480288	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000480288	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000480288	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000413604	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000413604	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000413604	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000451674	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000451674	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000451674	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000424529	ENST00000465039		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000424529	ENST00000440097		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000424529	ENST00000273317		TCGA	RV	BLCA	TCGA-BL-A0C8-01A	VGLL4	chr3	11744445	-	LIMD1	chr3	45707142	+
intron-5UTR	ENST00000368315	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000368315	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000313695	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000313695	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000361247	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000361247	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000368316	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000368316	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000462460	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000462460	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000477754	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000477754	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000313667	ENST00000368722		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000313667	ENST00000368723		TCGA	RV	BLCA	TCGA-K4-A5RH-01A	ARHGEF2	chr1	155948156	-	S100A7	chr1	153431506	-
5UTR-3CDS	ENST00000299293	ENST00000258534		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000299293	ENST00000544152		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000549921	ENST00000258534		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000549921	ENST00000544152		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000550389	ENST00000258534		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000550389	ENST00000544152		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000397997	ENST00000258534		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000397997	ENST00000544152		TCGA	RV	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	DRAM1	chr12	102291641	+
Frame-shit	ENST00000273038	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
Frame-shit	ENST00000273038	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
Frame-shit	ENST00000273038	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
5CDS-intron	ENST00000273038	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000430365	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000430365	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000430365	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-intron	ENST00000430365	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
5UTR-3CDS	ENST00000404339	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
5UTR-3CDS	ENST00000404339	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
5UTR-3CDS	ENST00000404339	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
5UTR-intron	ENST00000404339	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000480288	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000480288	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000480288	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-intron	ENST00000480288	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000413604	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000413604	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000413604	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-intron	ENST00000413604	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000451674	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000451674	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000451674	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-intron	ENST00000451674	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000424529	ENST00000356352		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000424529	ENST00000357604		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-3CDS	ENST00000424529	ENST00000397053		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
intron-intron	ENST00000424529	ENST00000460569		TCGA	RV	BLCA	TCGA-XF-A8HD-01A	VGLL4	chr3	11744445	-	UPF2	chr10	12021164	-
Frame-shit	ENST00000340250	ENST00000199389		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
Frame-shit	ENST00000340250	ENST00000536084		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
5CDS-intron	ENST00000340250	ENST00000495565		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
Frame-shit	ENST00000382361	ENST00000199389		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
Frame-shit	ENST00000382361	ENST00000536084		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
5CDS-intron	ENST00000382361	ENST00000495565		TCGA	RV	BLCA	TCGA-DK-A6B5-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
In-frame	ENST00000548898	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548898	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548898	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548898	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548898	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548898	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548898	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548898	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548898	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000552067	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000552067	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000552067	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000552067	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552067	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552067	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552067	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552067	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552067	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000420846	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000420846	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000420846	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000420846	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000420846	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000420846	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000420846	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000420846	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000420846	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548160	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548160	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548160	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000548160	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548160	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548160	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548160	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548160	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548160	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000546939	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000546939	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000546939	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000546939	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000546939	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000546939	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000546939	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000546939	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000546939	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552692	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552692	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552692	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552692	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552692	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552692	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552692	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552692	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552692	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000549117	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000549117	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000549117	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000549117	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549117	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549117	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549117	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549117	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549117	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000257857	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000257857	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000257857	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000257857	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000257857	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000257857	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000257857	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000257857	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000257857	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552754	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552754	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552754	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
In-frame	ENST00000552754	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552754	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552754	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552754	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552754	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000552754	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000550776	ENST00000552285		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000550776	ENST00000315970		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000550776	ENST00000439210		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000550776	ENST00000389146		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000550776	ENST00000413095		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000550776	ENST00000551035		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000550776	ENST00000435406		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000550776	ENST00000257966		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000550776	ENST00000389142		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	CD63	chr12	56119597	-	OS9	chr12	58109543	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMZ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A8HY-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
Frame-shit	ENST00000359282	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000359282	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000359282	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000359282	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000603815	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000603815	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000603815	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000603815	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000437231	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000437231	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000437231	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000437231	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000447282	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000447282	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000447282	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000447282	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000549863	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000549863	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000549863	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000549863	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000359462	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000359462	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000359462	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000359462	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000546463	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000546463	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000546463	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000546463	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000552296	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000552296	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000552296	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000552296	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000552819	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000552819	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000552819	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000552819	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000455667	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000455667	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000455667	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000455667	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000439930	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000439930	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000439930	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000439930	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000548933	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000548933	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
In-frame	ENST00000548933	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
Frame-shit	ENST00000548933	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
intron-3CDS	ENST00000541275	ENST00000267082		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
intron-3CDS	ENST00000541275	ENST00000422257		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
intron-3CDS	ENST00000541275	ENST00000338737		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
intron-3CDS	ENST00000541275	ENST00000550743		TCGA	RV	BLCA	TCGA-E7-A7PW-01A	PCBP2	chr12	53865591	+	ITGB7	chr12	53585420	-
3UTR-3CDS	ENST00000553896	ENST00000397242		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DHRS2	chr14	24109104	+	IL25	chr14	23844834	+
3UTR-3CDS	ENST00000553896	ENST00000329715		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DHRS2	chr14	24109104	+	IL25	chr14	23844834	+
Frame-shit	ENST00000250383	ENST00000397242		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DHRS2	chr14	24109104	+	IL25	chr14	23844834	+
Frame-shit	ENST00000250383	ENST00000329715		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DHRS2	chr14	24109104	+	IL25	chr14	23844834	+
Frame-shit	ENST00000344777	ENST00000397242		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DHRS2	chr14	24109104	+	IL25	chr14	23844834	+
Frame-shit	ENST00000344777	ENST00000329715		TCGA	RV	BLCA	TCGA-E7-A85H-01A	DHRS2	chr14	24109104	+	IL25	chr14	23844834	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-XF-AAMX-01A	FGFR3	chr4	1795770	+	TACC3	chr4	1746245	+
5UTR-3CDS	ENST00000340513	ENST00000398174		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000340513	ENST00000340852		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000340513	ENST00000335574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000340513	ENST00000376127		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-intron	ENST00000340513	ENST00000492709		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000300403	ENST00000398174		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000300403	ENST00000340852		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000300403	ENST00000335574		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000300403	ENST00000376127		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-intron	ENST00000300403	ENST00000492709		TCGA	RV	BLCA	TCGA-GC-A3I6-01A	TPX2	chr20	30327424	+	HM13	chr20	30115287	+
5UTR-3CDS	ENST00000247833	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000247833	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000378815	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000325555	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
5UTR-3CDS	ENST00000483530	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550536	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000362025	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000551641	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000553099	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000548898		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000552067		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000420846		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000548160		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000546939		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000552692		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000549117		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000257857		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000552754		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
intron-3CDS	ENST00000550847	ENST00000550776		TCGA	RV	BLCA	TCGA-4Z-AA7S-01A	RAB3IP	chr12	70132811	+	CD63	chr12	56120045	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-E7-A5KE-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MG-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A3MH-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	BLCA	TCGA-CF-A47S-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-intron	ENST00000560609	ENST00000376192		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-5UTR	ENST00000560609	ENST00000376189		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-5UTR	ENST00000560609	ENST00000415464		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-intron	ENST00000560609	ENST00000376182		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-intron	ENST00000560609	ENST00000414205		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-intron	ENST00000258884	ENST00000376192		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-5UTR	ENST00000258884	ENST00000376189		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-5UTR	ENST00000258884	ENST00000415464		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-intron	ENST00000258884	ENST00000376182		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-intron	ENST00000258884	ENST00000414205		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-intron	ENST00000558464	ENST00000376192		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-5UTR	ENST00000558464	ENST00000376189		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-5UTR	ENST00000558464	ENST00000415464		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-intron	ENST00000558464	ENST00000376182		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
5CDS-intron	ENST00000558464	ENST00000414205		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-intron	ENST00000559506	ENST00000376192		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-5UTR	ENST00000559506	ENST00000376189		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-5UTR	ENST00000559506	ENST00000415464		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-intron	ENST00000559506	ENST00000376182		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
intron-intron	ENST00000559506	ENST00000414205		TCGA	LD	BLCA	TCGA-2F-A9KP-01A	ABHD17C	chr15	80988360	+	PRAMEF6	chr1	13002370	-
Frame-shit	ENST00000373325	ENST00000409709		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373325	ENST00000409893		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373325	ENST00000458637		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373325	ENST00000409619		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373325	ENST00000605744		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
Frame-shit	ENST00000252011	ENST00000409709		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000252011	ENST00000409893		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000252011	ENST00000458637		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000252011	ENST00000409619		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000252011	ENST00000605744		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
Frame-shit	ENST00000373323	ENST00000409709		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373323	ENST00000409893		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373323	ENST00000458637		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373323	ENST00000409619		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
5CDS-intron	ENST00000373323	ENST00000605744		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	DHX35	chr20	37630485	+	MYO7A	chr11	76908526	+
Frame-shit	ENST00000398606	ENST00000350638		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
Frame-shit	ENST00000398606	ENST00000379163		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
Frame-shit	ENST00000398606	ENST00000395934		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
In-frame	ENST00000398603	ENST00000350638		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
In-frame	ENST00000398603	ENST00000379163		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
In-frame	ENST00000398603	ENST00000395934		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
3UTR-3CDS	ENST00000498765	ENST00000350638		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
3UTR-3CDS	ENST00000498765	ENST00000379163		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
3UTR-3CDS	ENST00000498765	ENST00000395934		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	GSTP1	chr11	67354008	+	ELP4	chr11	31671663	+
intron-3CDS	ENST00000399951	ENST00000458578		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000399951	ENST00000342192		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000399951	ENST00000545681		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000399953	ENST00000458578		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000399953	ENST00000342192		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000399953	ENST00000545681		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000405960	ENST00000458578		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000405960	ENST00000342192		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
intron-3CDS	ENST00000405960	ENST00000545681		TCGA	LD	BLCA	TCGA-2F-A9KT-01A	NPRL3	chr16	136667	-	UBE2L3	chr22	21975804	+
In-frame	ENST00000295887	ENST00000373450		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A1	chr2	234675680	+
In-frame	ENST00000295887	ENST00000609637		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A1	chr2	234675680	+
In-frame	ENST00000295887	ENST00000608381		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A1	chr2	234675680	+
In-frame	ENST00000295887	ENST00000609767		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A1	chr2	234675680	+
In-frame	ENST00000295887	ENST00000360418		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A1	chr2	234675680	+
In-frame	ENST00000295887	ENST00000608383		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A1	chr2	234675680	+
In-frame	ENST00000295887	ENST00000482026		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A3	chr2	234675680	+
In-frame	ENST00000295887	ENST00000373409		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A4	chr2	234675680	+
In-frame	ENST00000295887	ENST00000373414		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A5	chr2	234675680	+
In-frame	ENST00000295887	ENST00000373424		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000295887	ENST00000480628		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000295887	ENST00000305139		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000295887	ENST00000406651		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A6	chr2	234675680	+
In-frame	ENST00000295887	ENST00000373426		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A7	chr2	234675680	+
In-frame	ENST00000295887	ENST00000305208		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A8	chr2	234675680	+
In-frame	ENST00000295887	ENST00000354728		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	CDS1	chr4	85530678	+	UGT1A9	chr2	234675680	+
5CDS-5UTR	ENST00000287996	ENST00000439374		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000287996	ENST00000540998		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000287996	ENST00000357235		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000287996	ENST00000492796		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
intron-5UTR	ENST00000486841	ENST00000439374		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
intron-intron	ENST00000486841	ENST00000540998		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
intron-intron	ENST00000486841	ENST00000357235		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
intron-intron	ENST00000486841	ENST00000492796		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000375522	ENST00000439374		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000375522	ENST00000540998		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000375522	ENST00000357235		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000375522	ENST00000492796		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	IPPK	chr9	95396668	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000524189	ENST00000413292		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64692943	+
5CDS-5UTR	ENST00000524189	ENST00000164133		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64692943	+
intron-intron	ENST00000521515	ENST00000413292		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64692943	+
intron-5UTR	ENST00000521515	ENST00000164133		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64692943	+
intron-intron	ENST00000404075	ENST00000413292		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64692943	+
intron-5UTR	ENST00000404075	ENST00000164133		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	KIF13B	chr8	28976385	-	PPP2R5B	chr11	64692943	+
intron-3CDS	ENST00000513024	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000513024	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000513024	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000513024	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000513024	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5UTR-3CDS	ENST00000509638	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5UTR-3CDS	ENST00000509638	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5UTR-intron	ENST00000509638	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5UTR-intron	ENST00000509638	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5UTR-intron	ENST00000509638	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000508501	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000508501	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000508501	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000508501	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000508501	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000512946	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000512946	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512946	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512946	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512946	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000313860	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000313860	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000313860	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000313860	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000313860	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000512632	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000512632	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512632	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512632	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512632	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000512820	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
Frame-shit	ENST00000512820	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512820	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512820	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
5CDS-intron	ENST00000512820	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000503057	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000503057	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000503057	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000503057	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000503057	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000511496	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000511496	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000511496	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000511496	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000511496	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000514096	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000514096	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000514096	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000514096	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000514096	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000509277	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000509277	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000509277	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000509277	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000509277	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000396595	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000396595	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000396595	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000396595	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000396595	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000381753	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000381753	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000381753	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000381753	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000381753	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000509454	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000509454	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000509454	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000509454	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000509454	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000515785	ENST00000503431		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-3CDS	ENST00000515785	ENST00000284440		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000515785	ENST00000504818		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000515785	ENST00000508768		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-intron	ENST00000515785	ENST00000512788		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	LIMCH1	chr4	41362953	+	UCHL1	chr4	41266120	+
intron-5UTR	ENST00000531326	ENST00000520984		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000311212		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000519744		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000517844		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000520347		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000519882		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000521272		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000531326	ENST00000518336		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000520984		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000311212		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000519744		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000517844		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000520347		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000519882		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000521272		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000392597	ENST00000518336		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000520984		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000311212		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000519744		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000517844		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000520347		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000519882		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000521272		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5CDS-5UTR	ENST00000351677	ENST00000518336		TCGA	LD	BLCA	TCGA-2F-A9KW-01A	PTPN11	chr12	112856929	+	ZNF706	chr8	102213971	-
5UTR-3CDS	ENST00000420083	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000420083	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000420083	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-5UTR	ENST00000420083	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3UTR	ENST00000420083	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000449870	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000449870	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000449870	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-5UTR	ENST00000449870	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3UTR	ENST00000449870	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000318511	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000318511	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000318511	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-5UTR	ENST00000318511	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3UTR	ENST00000318511	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000407004	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000407004	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000407004	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-5UTR	ENST00000407004	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3UTR	ENST00000407004	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000589998	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000589998	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3CDS	ENST00000589998	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-5UTR	ENST00000589998	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5UTR-3UTR	ENST00000589998	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000250241	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000250241	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000250241	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-5UTR	ENST00000250241	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3UTR	ENST00000250241	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000592763	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000592763	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000592763	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-5UTR	ENST00000592763	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3UTR	ENST00000592763	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000588657	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000588657	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000588657	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-5UTR	ENST00000588657	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3UTR	ENST00000588657	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000590261	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000590261	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000590261	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-5UTR	ENST00000590261	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3UTR	ENST00000590261	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000586544	ENST00000211287		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000586544	ENST00000373761		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3CDS	ENST00000586544	ENST00000373766		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-5UTR	ENST00000586544	ENST00000373759		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
intron-3UTR	ENST00000586544	ENST00000490334		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ILF3	chr19	10765163	+	MAPK13	chr6	36099048	+
5CDS-intron	ENST00000397061	ENST00000587077		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUDT19	chr19	33200298	+	DPY19L3	chr19	32923622	+
5CDS-intron	ENST00000397061	ENST00000392250		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUDT19	chr19	33200298	+	DPY19L3	chr19	32923622	+
5CDS-intron	ENST00000397061	ENST00000586987		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUDT19	chr19	33200298	+	DPY19L3	chr19	32923622	+
5CDS-intron	ENST00000397061	ENST00000342179		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUDT19	chr19	33200298	+	DPY19L3	chr19	32923622	+
5CDS-intron	ENST00000397061	ENST00000590651		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUDT19	chr19	33200298	+	DPY19L3	chr19	32923622	+
intron-3CDS	ENST00000422090	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000413454	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000352066	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000597029	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000597723	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000596217	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000600583	ENST00000335523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	NUP62	chr19	50430951	-	VSTM2B	chr19	30054753	+
5CDS-5UTR	ENST00000393066	ENST00000494118		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-intron	ENST00000393066	ENST00000281523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-5UTR	ENST00000262294	ENST00000494118		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-intron	ENST00000262294	ENST00000281523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-5UTR	ENST00000376149	ENST00000494118		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-intron	ENST00000376149	ENST00000281523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-5UTR	ENST00000393065	ENST00000494118		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5CDS-intron	ENST00000393065	ENST00000281523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
intron-5UTR	ENST00000584889	ENST00000494118		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
intron-intron	ENST00000584889	ENST00000281523		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	TRIM37	chr17	57139928	-	ZNF385D	chr3	22210527	-
5UTR-3CDS	ENST00000311921	ENST00000444215		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ZNF507	chr19	32836689	+	TDRD12	chr19	33288641	+
5UTR-intron	ENST00000311921	ENST00000421545		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ZNF507	chr19	32836689	+	TDRD12	chr19	33288641	+
5UTR-3CDS	ENST00000544431	ENST00000444215		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ZNF507	chr19	32836689	+	TDRD12	chr19	33288641	+
5UTR-intron	ENST00000544431	ENST00000421545		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ZNF507	chr19	32836689	+	TDRD12	chr19	33288641	+
5UTR-3CDS	ENST00000355898	ENST00000444215		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ZNF507	chr19	32836689	+	TDRD12	chr19	33288641	+
5UTR-intron	ENST00000355898	ENST00000421545		TCGA	LD	BLCA	TCGA-4Z-AA7M-01A	ZNF507	chr19	32836689	+	TDRD12	chr19	33288641	+
In-frame	ENST00000374736	ENST00000346213		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
In-frame	ENST00000374736	ENST00000393860		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
In-frame	ENST00000374736	ENST00000547517		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
intron-3CDS	ENST00000494467	ENST00000346213		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
intron-3CDS	ENST00000494467	ENST00000393860		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
intron-3CDS	ENST00000494467	ENST00000547517		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
In-frame	ENST00000423487	ENST00000346213		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
In-frame	ENST00000423487	ENST00000393860		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
In-frame	ENST00000423487	ENST00000547517		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
Frame-shit	ENST00000374733	ENST00000346213		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
Frame-shit	ENST00000374733	ENST00000393860		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
Frame-shit	ENST00000374733	ENST00000547517		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ABCA1	chr9	107645320	-	RAB5C	chr17	40278866	-
5CDS-intron	ENST00000356406	ENST00000352690		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000356406	ENST00000283285		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000356406	ENST00000438817		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000413009	ENST00000352690		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000413009	ENST00000283285		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000413009	ENST00000438817		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000503233	ENST00000352690		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000503233	ENST00000283285		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-intron	ENST00000503233	ENST00000438817		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
intron-intron	ENST00000515797	ENST00000352690		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
intron-intron	ENST00000515797	ENST00000283285		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
intron-intron	ENST00000515797	ENST00000438817		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	ACOX3	chr4	8376705	-	CD96	chr3	111384374	+
5CDS-3UTR	ENST00000297265	ENST00000423113		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	CHMP4C	chr8	82645051	+	ITGB1	chr10	33190563	-
5CDS-3UTR	ENST00000297265	ENST00000396033		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	CHMP4C	chr8	82645051	+	ITGB1	chr10	33190563	-
5CDS-3UTR	ENST00000297265	ENST00000302278		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	CHMP4C	chr8	82645051	+	ITGB1	chr10	33190563	-
5CDS-3UTR	ENST00000297265	ENST00000374956		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	CHMP4C	chr8	82645051	+	ITGB1	chr10	33190563	-
5CDS-intron	ENST00000297265	ENST00000484088		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	CHMP4C	chr8	82645051	+	ITGB1	chr10	33190563	-
intron-3CDS	ENST00000378434	ENST00000376065		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-3CDS	ENST00000378434	ENST00000376052		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-intron	ENST00000378434	ENST00000466153		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-3CDS	ENST00000345941	ENST00000376065		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-3CDS	ENST00000345941	ENST00000376052		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-intron	ENST00000345941	ENST00000466153		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-3CDS	ENST00000465365	ENST00000376065		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-3CDS	ENST00000465365	ENST00000376052		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
intron-intron	ENST00000465365	ENST00000466153		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	LPAR6	chr13	48986557	-	TPP2	chr13	103257143	+
3UTR-3CDS	ENST00000396981	ENST00000574876		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000396981	ENST00000572293		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000396981	ENST00000269230		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000396981	ENST00000301396		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-5UTR	ENST00000396981	ENST00000436683		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-5UTR	ENST00000396981	ENST00000570823		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000572484	ENST00000574876		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000572484	ENST00000572293		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000572484	ENST00000269230		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-3CDS	ENST00000572484	ENST00000301396		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-5UTR	ENST00000572484	ENST00000436683		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
3UTR-5UTR	ENST00000572484	ENST00000570823		TCGA	LD	BLCA	TCGA-4Z-AA7Q-01A	UBE2G1	chr17	4186093	-	PELP1	chr17	4594737	-
5CDS-intron	ENST00000274695	ENST00000316020		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
5CDS-intron	ENST00000274695	ENST00000472329		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
intron-intron	ENST00000378624	ENST00000316020		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
intron-intron	ENST00000378624	ENST00000472329		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
5CDS-intron	ENST00000378610	ENST00000316020		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
5CDS-intron	ENST00000378610	ENST00000472329		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
intron-intron	ENST00000476517	ENST00000316020		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
intron-intron	ENST00000476517	ENST00000472329		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	CDKAL1	chr6	20548936	+	OFCC1	chr6	9850702	-
5CDS-3UTR	ENST00000378454	ENST00000274747		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
5CDS-3UTR	ENST00000378454	ENST00000543597		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
5CDS-3UTR	ENST00000378454	ENST00000535061		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
5CDS-intron	ENST00000378454	ENST00000483634		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
5CDS-intron	ENST00000378454	ENST00000378353		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
5CDS-intron	ENST00000378454	ENST00000378386		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
5CDS-intron	ENST00000378454	ENST00000443868		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-3UTR	ENST00000378450	ENST00000274747		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-3UTR	ENST00000378450	ENST00000543597		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-3UTR	ENST00000378450	ENST00000535061		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-intron	ENST00000378450	ENST00000483634		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-intron	ENST00000378450	ENST00000378353		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-intron	ENST00000378450	ENST00000378386		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
intron-intron	ENST00000378450	ENST00000443868		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	DCDC2	chr6	24353797	-	MRS2	chr6	24423165	+
In-frame	ENST00000367501	ENST00000368073		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367501	ENST00000326837		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367501	ENST00000368074		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367501	ENST00000608310		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367501	ENST00000556710		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
5CDS-intron	ENST00000367501	ENST00000610139		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
5CDS-intron	ENST00000367501	ENST00000475733		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367500	ENST00000368073		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367500	ENST00000326837		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367500	ENST00000368074		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367500	ENST00000608310		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
In-frame	ENST00000367500	ENST00000556710		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
5CDS-intron	ENST00000367500	ENST00000610139		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
5CDS-intron	ENST00000367500	ENST00000475733		TCGA	LD	BLCA	TCGA-4Z-AA7R-01A	SWT1	chr1	185159774	+	DCAF8	chr1	160195453	-
5UTR-5UTR	ENST00000337198	ENST00000311028		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-5UTR	ENST00000337198	ENST00000395923		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000337198	ENST00000220931		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-5UTR	ENST00000337198	ENST00000521599		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000337198	ENST00000522951		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000337198	ENST00000519508		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000337198	ENST00000521371		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-5UTR	ENST00000347770	ENST00000311028		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-5UTR	ENST00000347770	ENST00000395923		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000347770	ENST00000220931		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-5UTR	ENST00000347770	ENST00000521599		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000347770	ENST00000522951		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000347770	ENST00000519508		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
5UTR-intron	ENST00000347770	ENST00000521371		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-5UTR	ENST00000522311	ENST00000311028		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-5UTR	ENST00000522311	ENST00000395923		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-intron	ENST00000522311	ENST00000220931		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-5UTR	ENST00000522311	ENST00000521599		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-intron	ENST00000522311	ENST00000522951		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-intron	ENST00000522311	ENST00000519508		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-intron	ENST00000522311	ENST00000521371		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	AZIN1	chr8	103876035	-	NCALD	chr8	103032517	-
intron-3CDS	ENST00000324238	ENST00000225402		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	CRLF3	chr17	29111325	-	AATF	chr17	35307514	+
intron-intron	ENST00000324238	ENST00000590321		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	CRLF3	chr17	29111325	-	AATF	chr17	35307514	+
intron-3CDS	ENST00000544695	ENST00000225402		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	CRLF3	chr17	29111325	-	AATF	chr17	35307514	+
intron-intron	ENST00000544695	ENST00000590321		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	CRLF3	chr17	29111325	-	AATF	chr17	35307514	+
intron-3CDS	ENST00000577725	ENST00000225402		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	CRLF3	chr17	29111325	-	AATF	chr17	35307514	+
intron-intron	ENST00000577725	ENST00000590321		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	CRLF3	chr17	29111325	-	AATF	chr17	35307514	+
intron-3CDS	ENST00000361264	ENST00000372358		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000361264	ENST00000546165		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000361264	ENST00000372352		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000361264	ENST00000372351		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-intron	ENST00000361264	ENST00000467138		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000463286	ENST00000372358		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000463286	ENST00000546165		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000463286	ENST00000372352		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-3CDS	ENST00000463286	ENST00000372351		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
intron-intron	ENST00000463286	ENST00000467138		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	DCAF12	chr9	34087998	-	EXOSC2	chr9	133574716	+
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5UTR-3CDS	ENST00000520268	ENST00000360863		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	KB-1562D12.1	chr8	102504678	-	RGS22	chr8	100977658	-
5UTR-3CDS	ENST00000520268	ENST00000523287		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	KB-1562D12.1	chr8	102504678	-	RGS22	chr8	100977658	-
5UTR-3CDS	ENST00000520268	ENST00000523437		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	KB-1562D12.1	chr8	102504678	-	RGS22	chr8	100977658	-
5UTR-intron	ENST00000520268	ENST00000519421		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	KB-1562D12.1	chr8	102504678	-	RGS22	chr8	100977658	-
5UTR-5UTR	ENST00000308377	ENST00000474210		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37885676	-
5UTR-3UTR	ENST00000308377	ENST00000394231		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37885676	-
5UTR-3UTR	ENST00000308377	ENST00000577810		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37885676	-
intron-5UTR	ENST00000394566	ENST00000474210		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37885676	-
intron-3UTR	ENST00000394566	ENST00000394231		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37885676	-
intron-3UTR	ENST00000394566	ENST00000577810		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37885676	-
5UTR-5UTR	ENST00000336308	ENST00000543475		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	STARD3	chr17	37793484	+	SMCR5	chr17	17680773	-
3UTR-5UTR	ENST00000578232	ENST00000543475		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	STARD3	chr17	37793484	+	SMCR5	chr17	17680773	-
5UTR-5UTR	ENST00000544210	ENST00000543475		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	STARD3	chr17	37793484	+	SMCR5	chr17	17680773	-
5UTR-5UTR	ENST00000394250	ENST00000543475		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	STARD3	chr17	37793484	+	SMCR5	chr17	17680773	-
5UTR-5UTR	ENST00000580611	ENST00000543475		TCGA	LD	BLCA	TCGA-4Z-AA7S-01A	STARD3	chr17	37793484	+	SMCR5	chr17	17680773	-
intron-3CDS	ENST00000546961	ENST00000550433		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000548513		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000549446		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000298972		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000341669		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000350228		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000540018		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546961	ENST00000393288		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000546961	ENST00000548243		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000550433		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000548513		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000549446		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000298972		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000341669		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000350228		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000540018		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000550891	ENST00000393288		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000550891	ENST00000548243		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000550433		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000548513		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000549446		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000298972		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000341669		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000350228		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000540018		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000354534	ENST00000393288		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000354534	ENST00000548243		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000550433		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000548513		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000549446		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000298972		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000341669		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000350228		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000540018		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000545061	ENST00000393288		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000545061	ENST00000548243		TCGA	LD	BLCA	TCGA-4Z-AA7W-01A	SCN8A	chr12	52082880	+	KCNC2	chr12	75445097	-
In-frame	ENST00000442101	ENST00000379310		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
In-frame	ENST00000442101	ENST00000281496		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
5CDS-intron	ENST00000442101	ENST00000478987		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
5UTR-3CDS	ENST00000498824	ENST00000379310		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
5UTR-3CDS	ENST00000498824	ENST00000281496		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
5UTR-intron	ENST00000498824	ENST00000478987		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
In-frame	ENST00000239882	ENST00000379310		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
In-frame	ENST00000239882	ENST00000281496		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
5CDS-intron	ENST00000239882	ENST00000478987		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	ELF1	chr13	41556119	-	VWA8	chr13	42465723	-
In-frame	ENST00000311191	ENST00000378319		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000311191	ENST00000357596		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000311191	ENST00000488958		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
5CDS-intron	ENST00000311191	ENST00000460489		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000389798	ENST00000378319		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000389798	ENST00000357596		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000389798	ENST00000488958		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
5CDS-intron	ENST00000389798	ENST00000460489		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000389797	ENST00000378319		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000389797	ENST00000357596		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
In-frame	ENST00000389797	ENST00000488958		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
5CDS-intron	ENST00000389797	ENST00000460489		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	LRCH1	chr13	47303119	+	PHF11	chr13	50087195	+
Frame-shit	ENST00000261712	ENST00000264485		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000261712	ENST00000425175		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000261712	ENST00000351898		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000261712	ENST00000340595		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
5CDS-3UTR	ENST00000261712	ENST00000514331		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
5CDS-3UTR	ENST00000261712	ENST00000512686		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000457654	ENST00000264485		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000457654	ENST00000425175		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000457654	ENST00000351898		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000457654	ENST00000340595		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
5CDS-3UTR	ENST00000457654	ENST00000514331		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
5CDS-3UTR	ENST00000457654	ENST00000512686		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	PSMD11	chr17	30781637	+	SLC4A4	chr4	72205087	+
5CDS-intron	ENST00000255858	ENST00000380006		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000255858	ENST00000356721		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000255858	ENST00000394725		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000255858	ENST00000573005		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000540456	ENST00000380006		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000540456	ENST00000356721		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000540456	ENST00000394725		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000540456	ENST00000573005		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5UTR-intron	ENST00000392772	ENST00000380006		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5UTR-intron	ENST00000392772	ENST00000356721		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5UTR-intron	ENST00000392772	ENST00000394725		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5UTR-intron	ENST00000392772	ENST00000573005		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000381982	ENST00000380006		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000381982	ENST00000356721		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000381982	ENST00000394725		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
5CDS-intron	ENST00000381982	ENST00000573005		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	SEC14L4	chr22	30899664	-	SIAH1	chr16	48437578	-
Frame-shit	ENST00000560955	ENST00000220325		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	TRPM7	chr15	50888452	-	EHD4	chr15	42193379	-
Frame-shit	ENST00000313478	ENST00000220325		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	TRPM7	chr15	50888452	-	EHD4	chr15	42193379	-
intron-3CDS	ENST00000561443	ENST00000220325		TCGA	LD	BLCA	TCGA-4Z-AA80-01A	TRPM7	chr15	50888452	-	EHD4	chr15	42193379	-
5CDS-5UTR	ENST00000539605	ENST00000360187		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-intron	ENST00000539605	ENST00000392321		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-intron	ENST00000539605	ENST00000331711		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-5UTR	ENST00000357997	ENST00000360187		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-intron	ENST00000357997	ENST00000392321		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-intron	ENST00000357997	ENST00000331711		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-5UTR	ENST00000542282	ENST00000360187		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-intron	ENST00000542282	ENST00000392321		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-intron	ENST00000542282	ENST00000331711		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-5UTR	ENST00000542657	ENST00000360187		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-intron	ENST00000542657	ENST00000392321		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-intron	ENST00000542657	ENST00000331711		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-5UTR	ENST00000542374	ENST00000360187		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-intron	ENST00000542374	ENST00000392321		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
intron-intron	ENST00000542374	ENST00000331711		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-5UTR	ENST00000337516	ENST00000360187		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-intron	ENST00000337516	ENST00000392321		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
5CDS-intron	ENST00000337516	ENST00000331711		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	ANKLE2	chr12	133318005	-	ZNF605	chr12	133524856	-
Frame-shit	ENST00000262367	ENST00000301749		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
Frame-shit	ENST00000262367	ENST00000359128		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-5UTR	ENST00000262367	ENST00000419350		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-5UTR	ENST00000262367	ENST00000448023		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-5UTR	ENST00000262367	ENST00000603507		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-intron	ENST00000262367	ENST00000324659		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
Frame-shit	ENST00000382070	ENST00000301749		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
Frame-shit	ENST00000382070	ENST00000359128		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-5UTR	ENST00000382070	ENST00000419350		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-5UTR	ENST00000382070	ENST00000448023		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-5UTR	ENST00000382070	ENST00000603507		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-intron	ENST00000382070	ENST00000324659		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	CREBBP	chr16	3794895	-	NLRC3	chr16	3592274	-
5CDS-intron	ENST00000309395	ENST00000417478		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5CDS-intron	ENST00000309395	ENST00000381006		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5CDS-intron	ENST00000309395	ENST00000226328		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5CDS-intron	ENST00000309395	ENST00000536664		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5CDS-intron	ENST00000309395	ENST00000502653		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5CDS-3UTR	ENST00000309395	ENST00000512331		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5UTR-intron	ENST00000396051	ENST00000417478		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5UTR-intron	ENST00000396051	ENST00000381006		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5UTR-intron	ENST00000396051	ENST00000226328		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5UTR-intron	ENST00000396051	ENST00000536664		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5UTR-intron	ENST00000396051	ENST00000502653		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
5UTR-3UTR	ENST00000396051	ENST00000512331		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
3UTR-intron	ENST00000511449	ENST00000417478		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
3UTR-intron	ENST00000511449	ENST00000381006		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
3UTR-intron	ENST00000511449	ENST00000226328		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
3UTR-intron	ENST00000511449	ENST00000536664		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
3UTR-intron	ENST00000511449	ENST00000502653		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
3UTR-3UTR	ENST00000511449	ENST00000512331		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	MOB1B	chr4	71768267	+	RUFY3	chr4	71672233	+
Frame-shit	ENST00000523189	ENST00000296921		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	RANBP17	chr5	170289055	+	TLX3	chr5	170737154	+
intron-3CDS	ENST00000521759	ENST00000296921		TCGA	LD	BLCA	TCGA-4Z-AA82-01A	RANBP17	chr5	170289055	+	TLX3	chr5	170737154	+
intron-3CDS	ENST00000369567	ENST00000369738		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3UTR	ENST00000369567	ENST00000484512		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3UTR	ENST00000369567	ENST00000369737		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
In-frame	ENST00000369569	ENST00000369738		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
5CDS-3UTR	ENST00000369569	ENST00000484512		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
5CDS-3UTR	ENST00000369569	ENST00000369737		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
Frame-shit	ENST00000256658	ENST00000369738		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
5CDS-3UTR	ENST00000256658	ENST00000484512		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
5CDS-3UTR	ENST00000256658	ENST00000369737		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3CDS	ENST00000462591	ENST00000369738		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3UTR	ENST00000462591	ENST00000484512		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3UTR	ENST00000462591	ENST00000369737		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3CDS	ENST00000369566	ENST00000369738		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3UTR	ENST00000369566	ENST00000484512		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
intron-3UTR	ENST00000369566	ENST00000369737		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	AP4B1	chr1	114444377	-	PIFO	chr1	111889532	+
Frame-shit	ENST00000311956	ENST00000298834		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000311956	ENST00000426438		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000311956	ENST00000314845		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000311956	ENST00000533727		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000311956	ENST00000534300		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000311956	ENST00000458649		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000311956	ENST00000528950		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000311956	ENST00000529963		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ARHGAP1	chr11	46717210	-	AMBRA1	chr11	46439602	-
5UTR-3CDS	ENST00000355078	ENST00000336314		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138089199	+	LARP1	chr5	154190807	+
5UTR-3CDS	ENST00000302763	ENST00000336314		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138089199	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000518825	ENST00000336314		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138089199	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000520400	ENST00000336314		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138089199	+	LARP1	chr5	154190807	+
intron-3CDS	ENST00000540387	ENST00000336314		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	CTNNA1	chr5	138089199	+	LARP1	chr5	154190807	+
Frame-shit	ENST00000223145	ENST00000402384		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
Frame-shit	ENST00000223145	ENST00000406470		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
Frame-shit	ENST00000223145	ENST00000265577		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
Frame-shit	ENST00000223145	ENST00000396675		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
Frame-shit	ENST00000223145	ENST00000401396		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
Frame-shit	ENST00000223145	ENST00000422063		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
5CDS-intron	ENST00000223145	ENST00000407906		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
5CDS-intron	ENST00000223145	ENST00000476942		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-3CDS	ENST00000474269	ENST00000402384		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-3CDS	ENST00000474269	ENST00000406470		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-3CDS	ENST00000474269	ENST00000265577		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-3CDS	ENST00000474269	ENST00000396675		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-3CDS	ENST00000474269	ENST00000401396		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-3CDS	ENST00000474269	ENST00000422063		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-intron	ENST00000474269	ENST00000407906		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
intron-intron	ENST00000474269	ENST00000476942		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	GLCCI1	chr7	8110761	+	ICA1	chr7	8183602	-
5CDS-intron	ENST00000320394	ENST00000573319		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	IQCK	chr16	19745150	+	BCAR4	chr16	11914322	-
5CDS-intron	ENST00000564186	ENST00000573319		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	IQCK	chr16	19745150	+	BCAR4	chr16	11914322	-
5CDS-intron	ENST00000541926	ENST00000573319		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	IQCK	chr16	19745150	+	BCAR4	chr16	11914322	-
5CDS-intron	ENST00000433597	ENST00000573319		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	IQCK	chr16	19745150	+	BCAR4	chr16	11914322	-
intron-intron	ENST00000562762	ENST00000573319		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	IQCK	chr16	19745150	+	BCAR4	chr16	11914322	-
5UTR-3CDS	ENST00000357402	ENST00000346932		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000357402	ENST00000350527		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000357402	ENST00000308713		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000357402	ENST00000537485		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-5UTR	ENST00000357402	ENST00000562159		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000452209	ENST00000346932		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000452209	ENST00000350527		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000452209	ENST00000308713		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000452209	ENST00000537485		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-5UTR	ENST00000452209	ENST00000562159		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000395353	ENST00000346932		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000395353	ENST00000350527		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000395353	ENST00000308713		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-3CDS	ENST00000395353	ENST00000537485		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
5UTR-5UTR	ENST00000395353	ENST00000562159		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
intron-3CDS	ENST00000566554	ENST00000346932		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
intron-3CDS	ENST00000566554	ENST00000350527		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
intron-3CDS	ENST00000566554	ENST00000308713		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
intron-3CDS	ENST00000566554	ENST00000537485		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
intron-5UTR	ENST00000566554	ENST00000562159		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	MVP	chr16	29831831	+	SEZ6L2	chr16	29900046	-
In-frame	ENST00000254321	ENST00000361421		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ZNF700	chr19	12036088	+	TOX	chr8	59852103	-
intron-3CDS	ENST00000482090	ENST00000361421		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ZNF700	chr19	12036088	+	TOX	chr8	59852103	-
5CDS-3UTR	ENST00000200135	ENST00000534788		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ZW10	chr11	113639555	-	UPK2	chr11	118828308	+
5CDS-3UTR	ENST00000200135	ENST00000264031		TCGA	LD	BLCA	TCGA-4Z-AA84-01A	ZW10	chr11	113639555	-	UPK2	chr11	118828308	+
In-frame	ENST00000439268	ENST00000600132		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000439268	ENST00000318934		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000439268	ENST00000262970		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5CDS-intron	ENST00000439268	ENST00000595096		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000340578	ENST00000600132		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000340578	ENST00000318934		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000340578	ENST00000262970		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5CDS-intron	ENST00000340578	ENST00000595096		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000541471	ENST00000600132		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000541471	ENST00000318934		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000541471	ENST00000262970		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5CDS-intron	ENST00000541471	ENST00000595096		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000591092	ENST00000600132		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000591092	ENST00000318934		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000591092	ENST00000262970		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5CDS-intron	ENST00000591092	ENST00000595096		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000034275	ENST00000600132		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000034275	ENST00000318934		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
In-frame	ENST00000034275	ENST00000262970		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5CDS-intron	ENST00000034275	ENST00000595096		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5UTR-3CDS	ENST00000591124	ENST00000600132		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5UTR-3CDS	ENST00000591124	ENST00000318934		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5UTR-3CDS	ENST00000591124	ENST00000262970		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
5UTR-intron	ENST00000591124	ENST00000595096		TCGA	LD	BLCA	TCGA-4Z-AA86-01A	RANBP3	chr19	5978072	-	ANKRD24	chr19	4199872	+
intron-3CDS	ENST00000382549	ENST00000328735		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-3CDS	ENST00000382549	ENST00000330333		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-3CDS	ENST00000382549	ENST00000347667		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-intron	ENST00000382549	ENST00000466122		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
In-frame	ENST00000290155	ENST00000328735		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
In-frame	ENST00000290155	ENST00000330333		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
In-frame	ENST00000290155	ENST00000347667		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
5CDS-intron	ENST00000290155	ENST00000466122		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-3CDS	ENST00000540881	ENST00000328735		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-3CDS	ENST00000540881	ENST00000330333		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-3CDS	ENST00000540881	ENST00000347667		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
intron-intron	ENST00000540881	ENST00000466122		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	C21orf59	chr21	33975471	-	BACE2	chr21	42598193	+
5UTR-3CDS	ENST00000378609	ENST00000356200		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000378609	ENST00000378638		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000378609	ENST00000378633		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000378609	ENST00000357760		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000378609	ENST00000404249		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000378609	ENST00000358779		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-intron	ENST00000378609	ENST00000495016		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-intron	ENST00000378609	ENST00000378635		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000472614	ENST00000356200		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000472614	ENST00000378638		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000472614	ENST00000378633		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000472614	ENST00000357760		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000472614	ENST00000404249		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-3CDS	ENST00000472614	ENST00000358779		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-intron	ENST00000472614	ENST00000495016		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
5UTR-intron	ENST00000472614	ENST00000378635		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	GNB1	chr1	1822259	-	CDK11A	chr1	1636464	-
Frame-shit	ENST00000374332	ENST00000399763		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374332	ENST00000399766		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374332	ENST00000374343		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000374332	ENST00000470035		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000263979	ENST00000399763		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000263979	ENST00000399766		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000263979	ENST00000374343		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000263979	ENST00000470035		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
3UTR-3CDS	ENST00000473891	ENST00000399763		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
3UTR-3CDS	ENST00000473891	ENST00000399766		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
3UTR-3CDS	ENST00000473891	ENST00000374343		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
3UTR-intron	ENST00000473891	ENST00000470035		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374329	ENST00000399763		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374329	ENST00000399766		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374329	ENST00000374343		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000374329	ENST00000470035		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MAN1C1	chr1	26080069	+	TMEM57	chr1	25824755	+
In-frame	ENST00000426959	ENST00000210313		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MEGF9	chr9	123476036	-	PSMD5	chr9	123583257	-
In-frame	ENST00000426959	ENST00000373904		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MEGF9	chr9	123476036	-	PSMD5	chr9	123583257	-
In-frame	ENST00000426959	ENST00000604848		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MEGF9	chr9	123476036	-	PSMD5	chr9	123583257	-
In-frame	ENST00000373930	ENST00000210313		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MEGF9	chr9	123476036	-	PSMD5	chr9	123583257	-
In-frame	ENST00000373930	ENST00000373904		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MEGF9	chr9	123476036	-	PSMD5	chr9	123583257	-
In-frame	ENST00000373930	ENST00000604848		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	MEGF9	chr9	123476036	-	PSMD5	chr9	123583257	-
5CDS-5UTR	ENST00000358951	ENST00000322067		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
5CDS-5UTR	ENST00000358951	ENST00000469520		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
5CDS-5UTR	ENST00000358951	ENST00000354807		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
5CDS-intron	ENST00000358951	ENST00000544404		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
5CDS-5UTR	ENST00000358951	ENST00000414869		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
5CDS-intron	ENST00000358951	ENST00000482136		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
intron-5UTR	ENST00000462353	ENST00000322067		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
intron-5UTR	ENST00000462353	ENST00000469520		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
intron-5UTR	ENST00000462353	ENST00000354807		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
intron-intron	ENST00000462353	ENST00000544404		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
intron-5UTR	ENST00000462353	ENST00000414869		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
intron-intron	ENST00000462353	ENST00000482136		TCGA	LD	BLCA	TCGA-4Z-AA87-01A	RAB3GAP2	chr1	220379249	-	BPNT1	chr1	220253196	-
5CDS-intron	ENST00000341861	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000341861	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000341861	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000358939	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000358939	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000358939	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000300141	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000300141	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000300141	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000321147	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000321147	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000321147	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000321118	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000321118	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000321118	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
intron-intron	ENST00000339244	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
intron-intron	ENST00000339244	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
intron-intron	ENST00000339244	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000559233	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000559233	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000559233	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
intron-intron	ENST00000560048	ENST00000261888		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
intron-intron	ENST00000560048	ENST00000444347		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
intron-intron	ENST00000560048	ENST00000558873		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	DPP8	chr15	65766547	-	PARP16	chr15	65540566	-
5CDS-intron	ENST00000288235	ENST00000396057		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	MYO1E	chr15	59664697	-	FOXB1	chr15	60317955	+
5CDS-3UTR	ENST00000288235	ENST00000560857		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	MYO1E	chr15	59664697	-	FOXB1	chr15	60317955	+
intron-intron	ENST00000558814	ENST00000396057		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	MYO1E	chr15	59664697	-	FOXB1	chr15	60317955	+
intron-3UTR	ENST00000558814	ENST00000560857		TCGA	LD	BLCA	TCGA-5N-A9KM-01A	MYO1E	chr15	59664697	-	FOXB1	chr15	60317955	+
Frame-shit	ENST00000378004	ENST00000395044		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
Frame-shit	ENST00000378004	ENST00000265333		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
Frame-shit	ENST00000378004	ENST00000395047		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
5CDS-intron	ENST00000378004	ENST00000466080		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
Frame-shit	ENST00000274498	ENST00000395044		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
Frame-shit	ENST00000274498	ENST00000265333		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
Frame-shit	ENST00000274498	ENST00000395047		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
5CDS-intron	ENST00000274498	ENST00000466080		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
intron-3CDS	ENST00000486650	ENST00000395044		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
intron-3CDS	ENST00000486650	ENST00000265333		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
intron-3CDS	ENST00000486650	ENST00000395047		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
intron-intron	ENST00000486650	ENST00000466080		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ARHGAP26	chr5	142393681	+	VDAC1	chr5	133309539	-
intron-3CDS	ENST00000368503	ENST00000601415		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000368503	ENST00000325134		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000368503	ENST00000457177		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000368503	ENST00000506609		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-3CDS	ENST00000296955	ENST00000601415		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000296955	ENST00000325134		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000296955	ENST00000457177		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000296955	ENST00000506609		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
3UTR-3CDS	ENST00000338728	ENST00000601415		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
3UTR-intron	ENST00000338728	ENST00000325134		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
3UTR-intron	ENST00000338728	ENST00000457177		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
3UTR-intron	ENST00000338728	ENST00000506609		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-3CDS	ENST00000534777	ENST00000601415		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000534777	ENST00000325134		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000534777	ENST00000457177		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000534777	ENST00000506609		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	DCBLD1	chr6	117870471	+	ZNF550	chr19	58046638	-
intron-intron	ENST00000368026	ENST00000586702		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000368026	ENST00000294618		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000368026	ENST00000319867		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000289779	ENST00000586702		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000289779	ENST00000294618		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000289779	ENST00000319867		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000537746	ENST00000586702		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000537746	ENST00000294618		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000537746	ENST00000319867		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000472573	ENST00000586702		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000472573	ENST00000294618		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
intron-intron	ENST00000472573	ENST00000319867		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	F11R	chr1	160970028	-	DOCK6	chr19	11346671	-
5CDS-5UTR	ENST00000370818	ENST00000397010		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000309576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000397015		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000397012		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000397026		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000397000		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000539812		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000370818	ENST00000287820		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000397010		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000309576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000397015		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000397012		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000397026		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000397000		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000539812		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000394299	ENST00000287820		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000397010		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000309576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000397015		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000397012		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000397026		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000397000		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000539812		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000543339	ENST00000287820		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	GPC3	chrX	133087077	-	PPARG	chr3	12421203	+
In-frame	ENST00000398081	ENST00000398457		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398081	ENST00000462050		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398081	ENST00000347800		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398081	ENST00000398449		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398081	ENST00000361802		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398081	ENST00000343687		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398081	ENST00000398437		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398081	ENST00000340588		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
In-frame	ENST00000468090	ENST00000398457		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000468090	ENST00000462050		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000468090	ENST00000347800		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000468090	ENST00000398449		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000468090	ENST00000361802		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000468090	ENST00000343687		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000468090	ENST00000398437		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000468090	ENST00000340588		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
In-frame	ENST00000291565	ENST00000398457		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291565	ENST00000462050		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291565	ENST00000347800		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291565	ENST00000398449		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291565	ENST00000361802		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291565	ENST00000343687		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000291565	ENST00000398437		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000291565	ENST00000340588		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3CDS	ENST00000327574	ENST00000398457		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000327574	ENST00000462050		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000327574	ENST00000347800		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000327574	ENST00000398449		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000327574	ENST00000361802		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000327574	ENST00000343687		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-intron	ENST00000327574	ENST00000398437		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-intron	ENST00000327574	ENST00000340588		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3CDS	ENST00000476313	ENST00000398457		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000476313	ENST00000462050		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000476313	ENST00000347800		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000476313	ENST00000398449		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000476313	ENST00000361802		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000476313	ENST00000343687		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-intron	ENST00000476313	ENST00000398437		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-intron	ENST00000476313	ENST00000340588		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3CDS	ENST00000467908	ENST00000398457		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000467908	ENST00000462050		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000467908	ENST00000347800		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000467908	ENST00000398449		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000467908	ENST00000361802		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000467908	ENST00000343687		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-intron	ENST00000467908	ENST00000398437		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
intron-intron	ENST00000467908	ENST00000340588		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	PDXK	chr21	45139262	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000237536	ENST00000261991		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000237536	ENST00000536315		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000237536	ENST00000418736		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-intron	ENST00000237536	ENST00000556304		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
In-frame	ENST00000279034	ENST00000261991		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000279034	ENST00000536315		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000279034	ENST00000418736		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-intron	ENST00000279034	ENST00000556304		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
Frame-shit	ENST00000456801	ENST00000261991		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000456801	ENST00000536315		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000456801	ENST00000418736		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-intron	ENST00000456801	ENST00000556304		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
In-frame	ENST00000357779	ENST00000261991		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000357779	ENST00000536315		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-5UTR	ENST00000357779	ENST00000418736		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5CDS-intron	ENST00000357779	ENST00000556304		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	SOGA1	chr20	35431259	-	RPS6KA5	chr14	91444868	-
5UTR-3CDS	ENST00000427277	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000427277	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000427277	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
In-frame	ENST00000297954	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
In-frame	ENST00000297954	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000297954	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
In-frame	ENST00000395475	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
In-frame	ENST00000395475	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000395475	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000356055	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000356055	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000356055	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000349097	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000349097	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
5UTR-3CDS	ENST00000349097	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
In-frame	ENST00000395477	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
In-frame	ENST00000395477	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000395477	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375587		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375579		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375576		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	WNK2	chr9	95947892	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000457913	ENST00000380377		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000457913	ENST00000306388		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000457913	ENST00000520361		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000457913	ENST00000518338		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-5UTR	ENST00000457913	ENST00000522370		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000457913	ENST00000520039		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000457913	ENST00000517679		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000457913	ENST00000517881		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000277225	ENST00000380377		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000277225	ENST00000306388		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000277225	ENST00000520361		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000277225	ENST00000518338		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-5UTR	ENST00000277225	ENST00000522370		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000277225	ENST00000520039		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000277225	ENST00000517679		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000277225	ENST00000517881		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000441147	ENST00000380377		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000441147	ENST00000306388		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000441147	ENST00000520361		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000441147	ENST00000518338		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-5UTR	ENST00000441147	ENST00000522370		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000441147	ENST00000520039		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000441147	ENST00000517679		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000441147	ENST00000517881		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000542028	ENST00000380377		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000542028	ENST00000306388		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000542028	ENST00000520361		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
Frame-shit	ENST00000542028	ENST00000518338		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-5UTR	ENST00000542028	ENST00000522370		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000542028	ENST00000520039		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000542028	ENST00000517679		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000542028	ENST00000517881		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-3CDS	ENST00000497489	ENST00000380377		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-3CDS	ENST00000497489	ENST00000306388		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-3CDS	ENST00000497489	ENST00000520361		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-3CDS	ENST00000497489	ENST00000518338		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-5UTR	ENST00000497489	ENST00000522370		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-intron	ENST00000497489	ENST00000520039		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-intron	ENST00000497489	ENST00000517679		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
intron-intron	ENST00000497489	ENST00000517881		TCGA	LD	BLCA	TCGA-BL-A0C8-01A	ZNF462	chr9	109701388	+	TBCA	chr5	77004172	-
3UTR-5UTR	ENST00000565749	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
3UTR-5UTR	ENST00000565749	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-5UTR	ENST00000442925	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-5UTR	ENST00000442925	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-5UTR	ENST00000422265	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-5UTR	ENST00000422265	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000273145	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000273145	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	ACKR2	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-intron	ENST00000434457	ENST00000380376		TCGA	LD	BLCA	TCGA-BL-A13J-01A	DENND4C	chr9	19230831	+	ACER2	chr9	19446279	+
5UTR-intron	ENST00000434457	ENST00000340967		TCGA	LD	BLCA	TCGA-BL-A13J-01A	DENND4C	chr9	19230831	+	ACER2	chr9	19446279	+
5UTR-intron	ENST00000602925	ENST00000380376		TCGA	LD	BLCA	TCGA-BL-A13J-01A	DENND4C	chr9	19230831	+	ACER2	chr9	19446279	+
5UTR-intron	ENST00000602925	ENST00000340967		TCGA	LD	BLCA	TCGA-BL-A13J-01A	DENND4C	chr9	19230831	+	ACER2	chr9	19446279	+
intron-intron	ENST00000380432	ENST00000380376		TCGA	LD	BLCA	TCGA-BL-A13J-01A	DENND4C	chr9	19230831	+	ACER2	chr9	19446279	+
intron-intron	ENST00000380432	ENST00000340967		TCGA	LD	BLCA	TCGA-BL-A13J-01A	DENND4C	chr9	19230831	+	ACER2	chr9	19446279	+
intron-5UTR	ENST00000418093	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000418093	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000443313	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000443313	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-5UTR	ENST00000426937	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-5UTR	ENST00000426937	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000383748	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000383748	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000418176	ENST00000441964		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000418176	ENST00000344697		TCGA	LD	BLCA	TCGA-BL-A13J-01A	KRBOX1	chr3	42851024	+	POMGNT2	chr3	43123028	-
5UTR-3CDS	ENST00000367889	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367889	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367889	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367889	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367889	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367888	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367888	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367888	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367888	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367888	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367885	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367885	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367885	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367885	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367885	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367884	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000367884	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367884	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367884	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000367884	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000367883	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000367883	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000367883	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000367883	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000367883	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000367886	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000367886	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000367886	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000367886	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000367886	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000461759	ENST00000367879		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000461759	ENST00000372212		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000461759	ENST00000462329		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000461759	ENST00000469256		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
intron-intron	ENST00000461759	ENST00000470820		TCGA	LD	BLCA	TCGA-BL-A13J-01A	MGST3	chr1	165600530	+	UCK2	chr1	165859441	+
Frame-shit	ENST00000326793	ENST00000310380		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
Frame-shit	ENST00000326793	ENST00000437101		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
Frame-shit	ENST00000326793	ENST00000429994		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
Frame-shit	ENST00000326793	ENST00000355729		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
5CDS-intron	ENST00000326793	ENST00000460582		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
5CDS-intron	ENST00000326793	ENST00000356740		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
intron-3CDS	ENST00000472860	ENST00000310380		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
intron-3CDS	ENST00000472860	ENST00000437101		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
intron-3CDS	ENST00000472860	ENST00000429994		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
intron-3CDS	ENST00000472860	ENST00000355729		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
intron-intron	ENST00000472860	ENST00000460582		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
intron-intron	ENST00000472860	ENST00000356740		TCGA	LD	BLCA	TCGA-BT-A0YX-01A	ACAP2	chr3	195053757	-	XXYLT1	chr3	194877310	-
In-frame	ENST00000326793	ENST00000310380		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
5CDS-intron	ENST00000326793	ENST00000437101		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
5CDS-intron	ENST00000326793	ENST00000429994		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
5CDS-intron	ENST00000326793	ENST00000355729		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
5CDS-intron	ENST00000326793	ENST00000460582		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
5CDS-intron	ENST00000326793	ENST00000356740		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-3CDS	ENST00000472860	ENST00000310380		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-intron	ENST00000472860	ENST00000437101		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-intron	ENST00000472860	ENST00000429994		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-intron	ENST00000472860	ENST00000355729		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-intron	ENST00000472860	ENST00000460582		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-intron	ENST00000472860	ENST00000356740		TCGA	LD	BLCA	TCGA-BT-A20J-01A	ACAP2	chr3	195063200	-	XXYLT1	chr3	194947585	-
intron-5UTR	ENST00000245907	ENST00000358527		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-5UTR	ENST00000245907	ENST00000372703		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-5UTR	ENST00000245907	ENST00000296380		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-3UTR	ENST00000245907	ENST00000471429		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-5UTR	ENST00000599668	ENST00000358527		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-5UTR	ENST00000599668	ENST00000372703		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-5UTR	ENST00000599668	ENST00000296380		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
intron-3UTR	ENST00000599668	ENST00000471429		TCGA	LD	BLCA	TCGA-BT-A20J-01A	C3	chr19	6677917	-	EXO5	chr1	40980187	+
In-frame	ENST00000265136	ENST00000242209		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000265136	ENST00000538336		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000265136	ENST00000538443		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000265136	ENST00000489038		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000265136	ENST00000490776		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000395542	ENST00000242209		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000395542	ENST00000538336		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000395542	ENST00000538443		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000395542	ENST00000489038		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000395542	ENST00000490776		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000395540	ENST00000242209		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000395540	ENST00000538336		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000395540	ENST00000538443		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000395540	ENST00000489038		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000395540	ENST00000490776		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000441453	ENST00000242209		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000441453	ENST00000538336		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
In-frame	ENST00000441453	ENST00000538443		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000441453	ENST00000489038		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000441453	ENST00000490776		TCGA	LD	BLCA	TCGA-BT-A20J-01A	COBL	chr7	51258547	-	FKBP9	chr7	33042288	+
5UTR-3CDS	ENST00000304056	ENST00000265136		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
5UTR-3CDS	ENST00000304056	ENST00000395542		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
5UTR-3CDS	ENST00000304056	ENST00000395540		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
5UTR-3CDS	ENST00000304056	ENST00000441453		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
intron-3CDS	ENST00000485611	ENST00000265136		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
intron-3CDS	ENST00000485611	ENST00000395542		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
intron-3CDS	ENST00000485611	ENST00000395540		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
intron-3CDS	ENST00000485611	ENST00000441453		TCGA	LD	BLCA	TCGA-BT-A20J-01A	KBTBD2	chr7	32931148	-	COBL	chr7	51287641	-
In-frame	ENST00000377636	ENST00000382110		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000377636	ENST00000324266		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
5CDS-3UTR	ENST00000377636	ENST00000469147		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000431480	ENST00000382110		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000431480	ENST00000324266		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
5CDS-3UTR	ENST00000431480	ENST00000469147		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000425511	ENST00000382110		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000425511	ENST00000324266		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
5CDS-3UTR	ENST00000425511	ENST00000469147		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000377625	ENST00000382110		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
In-frame	ENST00000377625	ENST00000324266		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
5CDS-3UTR	ENST00000377625	ENST00000469147		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
intron-3CDS	ENST00000478591	ENST00000382110		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
intron-3CDS	ENST00000478591	ENST00000324266		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
intron-3UTR	ENST00000478591	ENST00000469147		TCGA	LD	BLCA	TCGA-BT-A20J-01A	TBC1D4	chr13	75884078	-	TRAPPC12	chr2	3447550	+
5CDS-5UTR	ENST00000369244	ENST00000339789		TCGA	LD	BLCA	TCGA-BT-A20N-01A	FBXL4	chr6	99374353	-	BTN3A3	chr6	26444185	+
5CDS-5UTR	ENST00000369244	ENST00000244519		TCGA	LD	BLCA	TCGA-BT-A20N-01A	FBXL4	chr6	99374353	-	BTN3A3	chr6	26444185	+
5CDS-5UTR	ENST00000369244	ENST00000361232		TCGA	LD	BLCA	TCGA-BT-A20N-01A	FBXL4	chr6	99374353	-	BTN3A3	chr6	26444185	+
5CDS-5UTR	ENST00000229971	ENST00000339789		TCGA	LD	BLCA	TCGA-BT-A20N-01A	FBXL4	chr6	99374353	-	BTN3A3	chr6	26444185	+
5CDS-5UTR	ENST00000229971	ENST00000244519		TCGA	LD	BLCA	TCGA-BT-A20N-01A	FBXL4	chr6	99374353	-	BTN3A3	chr6	26444185	+
5CDS-5UTR	ENST00000229971	ENST00000361232		TCGA	LD	BLCA	TCGA-BT-A20N-01A	FBXL4	chr6	99374353	-	BTN3A3	chr6	26444185	+
In-frame	ENST00000393799	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393799	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393799	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393799	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393799	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393799	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000393799	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000530427	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000530427	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000530427	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000530427	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000530427	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000530427	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3UTR	ENST00000530427	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393800	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393800	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393800	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393800	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393800	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393800	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000393800	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000534534	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000534534	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000534534	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000534534	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000534534	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3CDS	ENST00000534534	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-3UTR	ENST00000534534	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524845	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524845	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524845	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524845	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524845	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524845	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000524845	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265637	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265637	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265637	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265637	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265637	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265637	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000265637	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524904	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524904	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524904	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524904	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524904	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000524904	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000524904	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393801	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393801	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393801	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393801	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393801	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000393801	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000393801	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265636	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265636	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265636	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265636	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265636	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000265636	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000265636	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000529710	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000529710	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000529710	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000529710	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000529710	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000529710	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000529710	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000527403	ENST00000526343		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000527403	ENST00000282441		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000527403	ENST00000537274		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000527403	ENST00000345877		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000527403	ENST00000531439		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
In-frame	ENST00000527403	ENST00000524575		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
5CDS-3UTR	ENST00000527403	ENST00000528834		TCGA	LD	BLCA	TCGA-BT-A20N-01A	PPP6R3	chr11	68326147	+	YAP1	chr11	102098200	+
intron-intron	ENST00000513488	ENST00000315567		TCGA	LD	BLCA	TCGA-BT-A20N-01A	ZNF652	chr17	47388674	-	MRPL1	chr4	78828100	+
intron-3UTR	ENST00000513488	ENST00000506674		TCGA	LD	BLCA	TCGA-BT-A20N-01A	ZNF652	chr17	47388674	-	MRPL1	chr4	78828100	+
5CDS-intron	ENST00000362063	ENST00000315567		TCGA	LD	BLCA	TCGA-BT-A20N-01A	ZNF652	chr17	47388674	-	MRPL1	chr4	78828100	+
5CDS-3UTR	ENST00000362063	ENST00000506674		TCGA	LD	BLCA	TCGA-BT-A20N-01A	ZNF652	chr17	47388674	-	MRPL1	chr4	78828100	+
5CDS-intron	ENST00000430262	ENST00000315567		TCGA	LD	BLCA	TCGA-BT-A20N-01A	ZNF652	chr17	47388674	-	MRPL1	chr4	78828100	+
5CDS-3UTR	ENST00000430262	ENST00000506674		TCGA	LD	BLCA	TCGA-BT-A20N-01A	ZNF652	chr17	47388674	-	MRPL1	chr4	78828100	+
In-frame	ENST00000275364	ENST00000396946		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GNA12	chr7	2834562	-	CARD11	chr7	2974263	-
In-frame	ENST00000544127	ENST00000396946		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GNA12	chr7	2834562	-	CARD11	chr7	2974263	-
intron-3CDS	ENST00000491117	ENST00000396946		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GNA12	chr7	2834562	-	CARD11	chr7	2974263	-
In-frame	ENST00000407904	ENST00000396946		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GNA12	chr7	2834562	-	CARD11	chr7	2974263	-
intron-3CDS	ENST00000407653	ENST00000396946		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GNA12	chr7	2834562	-	CARD11	chr7	2974263	-
intron-3CDS	ENST00000396960	ENST00000396946		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GNA12	chr7	2834562	-	CARD11	chr7	2974263	-
5UTR-3CDS	ENST00000506455	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000506455	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000506455	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000506455	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000506455	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000506455	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-intron	ENST00000506455	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000511108	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000511108	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511108	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511108	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511108	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511108	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-intron	ENST00000511108	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000511507	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000511507	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511507	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511507	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511507	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000511507	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-intron	ENST00000511507	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-3CDS	ENST00000515602	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-3CDS	ENST00000515602	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-5UTR	ENST00000515602	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-5UTR	ENST00000515602	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-5UTR	ENST00000515602	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-5UTR	ENST00000515602	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
3UTR-intron	ENST00000515602	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000455639	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000455639	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000455639	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000455639	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000455639	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000455639	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-intron	ENST00000455639	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000393832	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000393832	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000393832	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000393832	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000393832	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000393832	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-intron	ENST00000393832	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000296518	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000296518	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000296518	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000296518	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000296518	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-5UTR	ENST00000296518	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5UTR-intron	ENST00000296518	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-3CDS	ENST00000513574	ENST00000375300		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-3CDS	ENST00000513574	ENST00000292055		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000513574	ENST00000375288		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000513574	ENST00000434315		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000513574	ENST00000542607		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000513574	ENST00000446921		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
intron-intron	ENST00000513574	ENST00000488337		TCGA	LD	BLCA	TCGA-BT-A20R-01A	GUCY1A3	chr4	156588571	+	SIK3	chr11	116827780	-
5CDS-intron	ENST00000253251	ENST00000355537		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000253251	ENST00000590564		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000377157	ENST00000355537		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000377157	ENST00000590564		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000343090	ENST00000355537		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000343090	ENST00000590564		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000377153	ENST00000355537		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000377153	ENST00000590564		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000475795	ENST00000355537		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000475795	ENST00000590564		TCGA	LD	BLCA	TCGA-BT-A20V-01A	UBE4B	chr1	10165802	+	ZNF536	chr19	31201664	+
In-frame	ENST00000261776	ENST00000566780		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
In-frame	ENST00000261776	ENST00000406884		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000261776	ENST00000539474		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000261776	ENST00000402655		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000261776	ENST00000408984		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000261776	ENST00000355860		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000261776	ENST00000565791		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000261776	ENST00000569818		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000571759	ENST00000566780		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000571759	ENST00000406884		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000571759	ENST00000539474		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000571759	ENST00000402655		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000571759	ENST00000408984		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000571759	ENST00000355860		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000571759	ENST00000565791		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000571759	ENST00000569818		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000536184	ENST00000566780		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000536184	ENST00000406884		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000536184	ENST00000539474		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000536184	ENST00000402655		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000536184	ENST00000408984		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000536184	ENST00000355860		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000536184	ENST00000565791		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-intron	ENST00000536184	ENST00000569818		TCGA	LD	BLCA	TCGA-BT-A20V-01A	VAC14	chr16	70765398	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000357103	ENST00000280665		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000357103	ENST00000397173		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-intron	ENST00000357103	ENST00000541700		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-intron	ENST00000357103	ENST00000540622		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000544470	ENST00000280665		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000544470	ENST00000397173		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-intron	ENST00000544470	ENST00000541700		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
intron-intron	ENST00000544470	ENST00000540622		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ADIPOR2	chr12	1800379	+	DCP1B	chr12	2077076	-
Frame-shit	ENST00000324856	ENST00000376281		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
In-frame	ENST00000324856	ENST00000376263		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000324856	ENST00000376264		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000324856	ENST00000351839		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000324856	ENST00000360384		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
Frame-shit	ENST00000457599	ENST00000376281		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
In-frame	ENST00000457599	ENST00000376263		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000457599	ENST00000376264		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000457599	ENST00000351839		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000457599	ENST00000360384		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
Frame-shit	ENST00000374152	ENST00000376281		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
In-frame	ENST00000374152	ENST00000376263		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000374152	ENST00000376264		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000374152	ENST00000351839		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
5CDS-intron	ENST00000374152	ENST00000360384		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
intron-3CDS	ENST00000540690	ENST00000376281		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
intron-3CDS	ENST00000540690	ENST00000376263		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
intron-intron	ENST00000540690	ENST00000376264		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
intron-intron	ENST00000540690	ENST00000351839		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
intron-intron	ENST00000540690	ENST00000360384		TCGA	LD	BLCA	TCGA-BT-A20W-01A	ARID1A	chr1	27059283	+	HNRNPK	chr9	86584355	-
In-frame	ENST00000230895	ENST00000280326		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000230895	ENST00000503026		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000230895	ENST00000515390		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000230895	ENST00000515676		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000230895	ENST00000506600		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000432074	ENST00000280326		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000432074	ENST00000503026		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000432074	ENST00000515390		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000432074	ENST00000515676		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
In-frame	ENST00000432074	ENST00000506600		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
5UTR-3CDS	ENST00000510546	ENST00000280326		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
5UTR-3CDS	ENST00000510546	ENST00000503026		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
5UTR-3CDS	ENST00000510546	ENST00000515390		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
5UTR-3CDS	ENST00000510546	ENST00000515676		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
5UTR-3CDS	ENST00000510546	ENST00000506600		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DAP	chr5	10748287	-	CCT5	chr5	10258223	+
3UTR-3CDS	ENST00000480945	ENST00000269500		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DDI2	chr1	15990606	+	FBXO15	chr18	71740792	-
3UTR-3CDS	ENST00000480945	ENST00000419743		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DDI2	chr1	15990606	+	FBXO15	chr18	71740792	-
3UTR-5UTR	ENST00000480945	ENST00000580806		TCGA	LD	BLCA	TCGA-BT-A20W-01A	DDI2	chr1	15990606	+	FBXO15	chr18	71740792	-
In-frame	ENST00000254480	ENST00000296444		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
In-frame	ENST00000254480	ENST00000444115		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
In-frame	ENST00000254480	ENST00000426002		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5CDS-5UTR	ENST00000254480	ENST00000465449		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5CDS-5UTR	ENST00000254480	ENST00000442747		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5CDS-5UTR	ENST00000254480	ENST00000443308		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5UTR-3CDS	ENST00000425518	ENST00000296444		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5UTR-3CDS	ENST00000425518	ENST00000444115		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5UTR-3CDS	ENST00000425518	ENST00000426002		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5UTR-5UTR	ENST00000425518	ENST00000465449		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5UTR-5UTR	ENST00000425518	ENST00000442747		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5UTR-5UTR	ENST00000425518	ENST00000443308		TCGA	LD	BLCA	TCGA-BT-A20W-01A	SMARCC1	chr3	47747899	-	SHISA5	chr3	48511242	-
5CDS-5UTR	ENST00000565468	ENST00000482954		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000476279		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000247866		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000565468	ENST00000461457		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000565468	ENST00000465506		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000565468	ENST00000464564		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000565468	ENST00000204307		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000460088		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000472695		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000476470		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000471136		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000565468	ENST00000475276		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TMEM178B	chr7	140774492	+	NDUFB2	chr7	140402666	+
In-frame	ENST00000560955	ENST00000267884		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-5UTR	ENST00000560955	ENST00000558527		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-5UTR	ENST00000560955	ENST00000558720		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-intron	ENST00000560955	ENST00000560773		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-intron	ENST00000560955	ENST00000559081		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
In-frame	ENST00000313478	ENST00000267884		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-5UTR	ENST00000313478	ENST00000558527		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-5UTR	ENST00000313478	ENST00000558720		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-intron	ENST00000313478	ENST00000560773		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
5CDS-intron	ENST00000313478	ENST00000559081		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
intron-3CDS	ENST00000561443	ENST00000267884		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
intron-5UTR	ENST00000561443	ENST00000558527		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
intron-5UTR	ENST00000561443	ENST00000558720		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
intron-intron	ENST00000561443	ENST00000560773		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
intron-intron	ENST00000561443	ENST00000559081		TCGA	LD	BLCA	TCGA-BT-A20W-01A	TRPM7	chr15	50978728	-	SRP14	chr15	40331149	-
Frame-shit	ENST00000338110	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000338110	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000338110	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000395248	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000395248	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000395248	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
intron-3CDS	ENST00000575627	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
intron-3UTR	ENST00000575627	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
intron-3UTR	ENST00000575627	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000566897	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000566897	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000566897	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000569545	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000569545	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000569545	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000563060	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000563060	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000563060	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000412304	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000412304	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000412304	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000564546	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000564546	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000564546	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000564595	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000564595	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000564595	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000569798	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000569798	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000569798	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
Frame-shit	ENST00000395240	ENST00000323345		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000395240	ENST00000463740		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-3UTR	ENST00000395240	ENST00000315731		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	ALDOA	chr16	30080710	+	RPL7A	chr9	136216856	+
5CDS-intron	ENST00000373867	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373867	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373867	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373867	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373867	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373867	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373868	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373868	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373868	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373868	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373868	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000373868	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000442566	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000442566	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000442566	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000442566	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000442566	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000442566	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000277705	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000277705	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000277705	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000277705	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000277705	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000277705	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000419214	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000419214	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000419214	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000419214	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000419214	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000419214	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000468840	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000468840	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000468840	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000468840	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000468840	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-intron	ENST00000468840	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000435852	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000435852	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000435852	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000435852	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000435852	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000435852	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000422313	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000422313	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000422313	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000422313	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000422313	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000422313	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000510215	ENST00000395255		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000510215	ENST00000410046		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000510215	ENST00000395251		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000510215	ENST00000395254		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000510215	ENST00000466727		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
intron-intron	ENST00000510215	ENST00000395249		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FAM13C	chr10	61011335	-	ZNF365	chr10	64382863	+
5CDS-5UTR	ENST00000262093	ENST00000374392		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FECH	chr18	55247305	-	NCMAP	chr1	24921915	+
5CDS-3UTR	ENST00000262093	ENST00000486262		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FECH	chr18	55247305	-	NCMAP	chr1	24921915	+
intron-5UTR	ENST00000382873	ENST00000374392		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FECH	chr18	55247305	-	NCMAP	chr1	24921915	+
intron-3UTR	ENST00000382873	ENST00000486262		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FECH	chr18	55247305	-	NCMAP	chr1	24921915	+
intron-5UTR	ENST00000585699	ENST00000374392		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FECH	chr18	55247305	-	NCMAP	chr1	24921915	+
intron-3UTR	ENST00000585699	ENST00000486262		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	FECH	chr18	55247305	-	NCMAP	chr1	24921915	+
5UTR-5UTR	ENST00000358691	ENST00000416101		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000358691	ENST00000269081		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000358691	ENST00000432313		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-intron	ENST00000358691	ENST00000519732		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000358691	ENST00000423818		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580168	ENST00000416101		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580168	ENST00000269081		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580168	ENST00000432313		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-intron	ENST00000580168	ENST00000519732		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580168	ENST00000423818		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580662	ENST00000416101		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580662	ENST00000269081		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580662	ENST00000432313		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-intron	ENST00000580662	ENST00000519732		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5UTR-5UTR	ENST00000580662	ENST00000423818		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	HELZ	chr17	65239900	-	ABCA10	chr17	67223426	-
5CDS-3UTR	ENST00000534358	ENST00000525620		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000534358	ENST00000535888		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000534358	ENST00000544661		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000534358	ENST00000332793		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000534358	ENST00000526800		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000389506	ENST00000525620		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000389506	ENST00000535888		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000389506	ENST00000544661		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000389506	ENST00000332793		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000389506	ENST00000526800		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000354520	ENST00000525620		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000354520	ENST00000535888		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000354520	ENST00000544661		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000354520	ENST00000332793		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000354520	ENST00000526800		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
intron-3UTR	ENST00000420751	ENST00000525620		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
intron-3UTR	ENST00000420751	ENST00000535888		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000420751	ENST00000544661		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000420751	ENST00000332793		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000420751	ENST00000526800		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	KMT2A	chr11	118345030	+	SLC22A10	chr11	63129852	+
In-frame	ENST00000397517	ENST00000376234		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
In-frame	ENST00000397517	ENST00000342624		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
In-frame	ENST00000397517	ENST00000328767		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
5CDS-intron	ENST00000397517	ENST00000462211		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
In-frame	ENST00000539966	ENST00000376234		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
In-frame	ENST00000539966	ENST00000342624		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
In-frame	ENST00000539966	ENST00000328767		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
5CDS-intron	ENST00000539966	ENST00000462211		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-3CDS	ENST00000481288	ENST00000376234		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-3CDS	ENST00000481288	ENST00000342624		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-3CDS	ENST00000481288	ENST00000328767		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-intron	ENST00000481288	ENST00000462211		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-3CDS	ENST00000376547	ENST00000376234		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-3CDS	ENST00000376547	ENST00000342624		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-3CDS	ENST00000376547	ENST00000328767		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
intron-intron	ENST00000376547	ENST00000462211		TCGA	LD	BLCA	TCGA-BT-A2LA-01A	STK24	chr13	99228999	-	TMTC4	chr13	101258681	-
Frame-shit	ENST00000520468	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000520468	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000297564	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000297564	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000520271	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000520271	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000517682	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000517682	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000524245	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000524245	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000522940	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000522940	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000518171	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000518171	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000523016	ENST00000444215		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000523016	ENST00000421545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	COX6C	chr8	100904136	-	TDRD12	chr19	33281437	+
Frame-shit	ENST00000275364	ENST00000360605		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000275364	ENST00000542441		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000275364	ENST00000392271		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000275364	ENST00000312051		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-intron	ENST00000275364	ENST00000574176		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
Frame-shit	ENST00000544127	ENST00000360605		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000544127	ENST00000542441		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000544127	ENST00000392271		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000544127	ENST00000312051		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-intron	ENST00000544127	ENST00000574176		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3CDS	ENST00000491117	ENST00000360605		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000491117	ENST00000542441		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000491117	ENST00000392271		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000491117	ENST00000312051		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-intron	ENST00000491117	ENST00000574176		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
Frame-shit	ENST00000407904	ENST00000360605		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000407904	ENST00000542441		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000407904	ENST00000392271		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-3UTR	ENST00000407904	ENST00000312051		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
5CDS-intron	ENST00000407904	ENST00000574176		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3CDS	ENST00000407653	ENST00000360605		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000407653	ENST00000542441		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000407653	ENST00000392271		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000407653	ENST00000312051		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-intron	ENST00000407653	ENST00000574176		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3CDS	ENST00000396960	ENST00000360605		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000396960	ENST00000542441		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000396960	ENST00000392271		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-3UTR	ENST00000396960	ENST00000312051		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
intron-intron	ENST00000396960	ENST00000574176		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	GNA12	chr7	2834562	-	URI1	chr19	30506443	+
3UTR-3CDS	ENST00000377791	ENST00000312239		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-intron	ENST00000377791	ENST00000487117		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-intron	ENST00000377791	ENST00000375000		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-5UTR	ENST00000377791	ENST00000375003		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-3CDS	ENST00000602637	ENST00000312239		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-intron	ENST00000602637	ENST00000487117		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-intron	ENST00000602637	ENST00000375000		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
3UTR-5UTR	ENST00000602637	ENST00000375003		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	HIST1H2AC	chr6	26124861	+	HP1BP3	chr1	21100103	-
In-frame	ENST00000517309	ENST00000430223		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
In-frame	ENST00000517309	ENST00000341166		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
5CDS-intron	ENST00000517309	ENST00000520545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
intron-3CDS	ENST00000455950	ENST00000430223		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
intron-3CDS	ENST00000455950	ENST00000341166		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
intron-intron	ENST00000455950	ENST00000520545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
3UTR-3CDS	ENST00000518776	ENST00000430223		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
3UTR-3CDS	ENST00000518776	ENST00000341166		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
3UTR-intron	ENST00000518776	ENST00000520545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
intron-3CDS	ENST00000522072	ENST00000430223		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
intron-3CDS	ENST00000522072	ENST00000341166		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
intron-intron	ENST00000522072	ENST00000520545		TCGA	LD	BLCA	TCGA-BT-A2LD-01A	PTDSS1	chr8	97299374	+	NIPAL2	chr8	99266315	-
5CDS-intron	ENST00000483209	ENST00000390168		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	B4GALT4	chr3	118930579	-	H19	chr11	2019037	-
intron-intron	ENST00000467604	ENST00000390168		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	B4GALT4	chr3	118930579	-	H19	chr11	2019037	-
intron-intron	ENST00000471675	ENST00000390168		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	B4GALT4	chr3	118930579	-	H19	chr11	2019037	-
intron-intron	ENST00000359213	ENST00000390168		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	B4GALT4	chr3	118930579	-	H19	chr11	2019037	-
intron-intron	ENST00000393765	ENST00000390168		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	B4GALT4	chr3	118930579	-	H19	chr11	2019037	-
intron-intron	ENST00000460321	ENST00000390168		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	B4GALT4	chr3	118930579	-	H19	chr11	2019037	-
intron-5UTR	ENST00000458578	ENST00000339468		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	UBE2L3	chr22	21922060	+	YPEL1	chr22	22065197	-
intron-5UTR	ENST00000458578	ENST00000403503		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	UBE2L3	chr22	21922060	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000342192	ENST00000339468		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	UBE2L3	chr22	21922060	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000342192	ENST00000403503		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	UBE2L3	chr22	21922060	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000545681	ENST00000339468		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	UBE2L3	chr22	21922060	+	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000545681	ENST00000403503		TCGA	LD	BLCA	TCGA-BT-A3PH-01A	UBE2L3	chr22	21922060	+	YPEL1	chr22	22065197	-
Frame-shit	ENST00000395808	ENST00000402693		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000395808	ENST00000388824		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000589119	ENST00000402693		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
In-frame	ENST00000589119	ENST00000388824		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000312090	ENST00000402693		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000312090	ENST00000388824		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000269814	ENST00000402693		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000269814	ENST00000388824		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000325464	ENST00000402693		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000325464	ENST00000388824		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000606828	ENST00000402693		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000606828	ENST00000388824		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	MED16	chr19	881559	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000520500	ENST00000037502		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	PPP2CB	chr8	30669836	-	MYOC	chr1	171607862	-
Frame-shit	ENST00000221138	ENST00000037502		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	PPP2CB	chr8	30669836	-	MYOC	chr1	171607862	-
Frame-shit	ENST00000518564	ENST00000037502		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	PPP2CB	chr8	30669836	-	MYOC	chr1	171607862	-
intron-5UTR	ENST00000456518	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000456518	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000456518	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000456518	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000456518	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000456518	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000456518	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397174	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397174	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397174	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397174	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397174	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397174	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000397174	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000402904	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000402904	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000402904	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000402904	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000402904	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000402904	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000402904	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361191	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361191	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361191	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361191	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361191	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361191	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000361191	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397171	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397171	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397171	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397171	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397171	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000397171	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000397171	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361705	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361705	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361705	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361705	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361705	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000361705	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000361705	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000326197	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000326197	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000326197	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000326197	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000326197	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000326197	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000326197	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372595	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372595	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372595	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372595	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372595	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372595	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000372595	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000337495	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000337495	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000337495	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000337495	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000337495	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000337495	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-intron	ENST00000337495	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372596	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372596	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372596	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372596	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372596	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372596	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-intron	ENST00000372596	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372597	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372597	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372597	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372597	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372597	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372597	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
5UTR-intron	ENST00000372597	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000472037	ENST00000372797		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000472037	ENST00000372802		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000472037	ENST00000372792		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000472037	ENST00000372798		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000472037	ENST00000340450		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-5UTR	ENST00000472037	ENST00000372805		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
intron-intron	ENST00000472037	ENST00000479759		TCGA	LD	BLCA	TCGA-BT-A3PK-01A	SCMH1	chr1	41707731	-	CAP1	chr1	40525009	+
Frame-shit	ENST00000269143	ENST00000261267		TCGA	LD	BLCA	TCGA-BT-A42C-01A	AFG3L2	chr18	12363781	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000269143	ENST00000549690		TCGA	LD	BLCA	TCGA-BT-A42C-01A	AFG3L2	chr18	12363781	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000269143	ENST00000548839		TCGA	LD	BLCA	TCGA-BT-A42C-01A	AFG3L2	chr18	12363781	-	LYZ	chr12	69743888	+
5CDS-intron	ENST00000540418	ENST00000299293		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000540418	ENST00000549921		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000540418	ENST00000550389		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000540418	ENST00000397997		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000303145	ENST00000299293		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000303145	ENST00000549921		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000303145	ENST00000550389		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000303145	ENST00000397997		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000411698	ENST00000299293		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000411698	ENST00000549921		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000411698	ENST00000550389		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000411698	ENST00000397997		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000393543	ENST00000299293		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000393543	ENST00000549921		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000393543	ENST00000550389		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000393543	ENST00000397997		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000430606	ENST00000299293		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000430606	ENST00000549921		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000430606	ENST00000550389		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000430606	ENST00000397997		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000545724	ENST00000299293		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000545724	ENST00000549921		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000545724	ENST00000550389		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
intron-intron	ENST00000545724	ENST00000397997		TCGA	LD	BLCA	TCGA-BT-A42C-01A	MDM1	chr12	68696400	-	FRS2	chr12	69879982	+
5CDS-intron	ENST00000229179	ENST00000539652		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000229179	ENST00000556010		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000229179	ENST00000358230		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-5UTR	ENST00000229179	ENST00000544599		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-5UTR	ENST00000229179	ENST00000286424		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000229179	ENST00000398033		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000229179	ENST00000542724		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000229179	ENST00000535812		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000378905	ENST00000539652		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000378905	ENST00000556010		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000378905	ENST00000358230		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-5UTR	ENST00000378905	ENST00000544599		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-5UTR	ENST00000378905	ENST00000286424		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000378905	ENST00000398033		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000378905	ENST00000542724		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000378905	ENST00000535812		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000539906	ENST00000539652		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000539906	ENST00000556010		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000539906	ENST00000358230		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-5UTR	ENST00000539906	ENST00000544599		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-5UTR	ENST00000539906	ENST00000286424		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000539906	ENST00000398033		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000539906	ENST00000542724		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000539906	ENST00000535812		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-intron	ENST00000401003	ENST00000539652		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-intron	ENST00000401003	ENST00000556010		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-intron	ENST00000401003	ENST00000358230		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-5UTR	ENST00000401003	ENST00000544599		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-5UTR	ENST00000401003	ENST00000286424		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-intron	ENST00000401003	ENST00000398033		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-intron	ENST00000401003	ENST00000542724		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
intron-intron	ENST00000401003	ENST00000535812		TCGA	LD	BLCA	TCGA-BT-A42C-01A	NUP107	chr12	69113434	+	TMBIM4	chr12	66532549	-
5CDS-intron	ENST00000283228	ENST00000333850		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000283228	ENST00000546576		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000440835	ENST00000333850		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000440835	ENST00000546576		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
intron-intron	ENST00000537619	ENST00000333850		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
intron-intron	ENST00000537619	ENST00000546576		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000378778	ENST00000333850		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000378778	ENST00000546576		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000342084	ENST00000333850		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000342084	ENST00000546576		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000549308	ENST00000333850		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
5CDS-intron	ENST00000549308	ENST00000546576		TCGA	LD	BLCA	TCGA-BT-A42C-01A	PTPRR	chr12	71092045	-	TPH2	chr12	72533900	+
intron-3CDS	ENST00000363315	ENST00000586622		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-3CDS	ENST00000363315	ENST00000588460		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000591864		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000590393		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000593181		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000355954		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000336509		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000590514		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000363315	ENST00000590070		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-3CDS	ENST00000364968	ENST00000586622		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-3CDS	ENST00000364968	ENST00000588460		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000591864		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000590393		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000593181		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000355954		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000336509		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000590514		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
intron-intron	ENST00000364968	ENST00000590070		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SNHG16	chr17	74555125	+	MFSD11	chr17	74765828	+
Frame-shit	ENST00000355086	ENST00000258111		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SRGAP1	chr12	64238663	+	KCNMB4	chr12	70793989	+
Frame-shit	ENST00000357825	ENST00000258111		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SRGAP1	chr12	64238663	+	KCNMB4	chr12	70793989	+
intron-3CDS	ENST00000543397	ENST00000258111		TCGA	LD	BLCA	TCGA-BT-A42C-01A	SRGAP1	chr12	64238663	+	KCNMB4	chr12	70793989	+
Frame-shit	ENST00000261837	ENST00000267859		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
5CDS-5UTR	ENST00000261837	ENST00000478981		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
5CDS-5UTR	ENST00000261837	ENST00000607373		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
5CDS-5UTR	ENST00000261837	ENST00000415213		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-3CDS	ENST00000396335	ENST00000267859		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000396335	ENST00000478981		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000396335	ENST00000607373		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000396335	ENST00000415213		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
Frame-shit	ENST00000358784	ENST00000267859		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
5CDS-5UTR	ENST00000358784	ENST00000478981		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
5CDS-5UTR	ENST00000358784	ENST00000607373		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
5CDS-5UTR	ENST00000358784	ENST00000415213		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-3CDS	ENST00000559348	ENST00000267859		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000559348	ENST00000478981		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000559348	ENST00000607373		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000559348	ENST00000415213		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-3CDS	ENST00000560116	ENST00000267859		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000560116	ENST00000478981		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000560116	ENST00000607373		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-5UTR	ENST00000560116	ENST00000415213		TCGA	LD	BLCA	TCGA-BT-A42F-01A	GNB5	chr15	52439656	-	BNIP2	chr15	59956319	-
intron-3CDS	ENST00000560626	ENST00000258930		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-intron	ENST00000560626	ENST00000539011		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-intron	ENST00000560626	ENST00000557846		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-intron	ENST00000560626	ENST00000560618		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-3CDS	ENST00000558305	ENST00000258930		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-intron	ENST00000558305	ENST00000539011		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-intron	ENST00000558305	ENST00000557846		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-intron	ENST00000558305	ENST00000560618		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-3CDS	ENST00000567337	ENST00000258930		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-intron	ENST00000567337	ENST00000539011		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-intron	ENST00000567337	ENST00000557846		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
5UTR-intron	ENST00000567337	ENST00000560618		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-3CDS	ENST00000312493	ENST00000258930		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-intron	ENST00000312493	ENST00000539011		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-intron	ENST00000312493	ENST00000557846		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
intron-intron	ENST00000312493	ENST00000560618		TCGA	LD	BLCA	TCGA-BT-A42F-01A	PEAK1	chr15	77578765	-	CIB2	chr15	78416081	-
3UTR-3CDS	ENST00000523376	ENST00000379554		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000523376	ENST00000424273		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000523376	ENST00000379556		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000523376	ENST00000528567		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000523376	ENST00000525218		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000523376	ENST00000530161		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-intron	ENST00000523376	ENST00000447214		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000324229	ENST00000379554		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000324229	ENST00000424273		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000324229	ENST00000379556		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000324229	ENST00000528567		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000324229	ENST00000525218		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000324229	ENST00000530161		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-intron	ENST00000324229	ENST00000447214		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000533448	ENST00000379554		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000533448	ENST00000424273		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000533448	ENST00000379556		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000533448	ENST00000528567		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000533448	ENST00000525218		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-3CDS	ENST00000533448	ENST00000530161		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
3UTR-intron	ENST00000533448	ENST00000447214		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	CALCB	chr11	15099016	+	INSC	chr11	15197287	+
intron-3CDS	ENST00000423278	ENST00000404234		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-3CDS	ENST00000423278	ENST00000529632		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-3CDS	ENST00000423278	ENST00000360929		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-3CDS	ENST00000423278	ENST00000248933		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-3CDS	ENST00000423278	ENST00000343706		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-3CDS	ENST00000423278	ENST00000402979		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-3CDS	ENST00000423278	ENST00000403121		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-intron	ENST00000423278	ENST00000411842		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
intron-intron	ENST00000423278	ENST00000494013		TCGA	LD	BLCA	TCGA-C4-A0EZ-01A	MIAT	chr22	27042923	+	SEZ6L	chr22	26736402	+
5UTR-intron	ENST00000522684	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000522684	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000522684	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000535192	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000535192	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000535192	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519465	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519465	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519465	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000517887	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000517887	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000517887	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000521059	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000521059	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000521059	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000395218	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000395218	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000395218	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000538769	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000538769	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000538769	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000340930	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000340930	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000340930	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519419	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519419	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519419	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000430260	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000430260	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000430260	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000519881	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000519881	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
5UTR-intron	ENST00000519881	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000520892	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000520892	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000520892	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519635	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519635	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000519635	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000517712	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000517712	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000517712	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000522950	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000522950	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000522950	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000520151	ENST00000220849		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000520151	ENST00000519030		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-intron	ENST00000520151	ENST00000519517		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	PTK2	chr8	142011224	-	EIF3E	chr8	109321692	-
intron-3CDS	ENST00000504618	ENST00000265000		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	SAP30	chr4	174295188	+	GALNT7	chr4	174169131	+
intron-3CDS	ENST00000504618	ENST00000512285		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	SAP30	chr4	174295188	+	GALNT7	chr4	174169131	+
intron-intron	ENST00000504618	ENST00000502407		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	SAP30	chr4	174295188	+	GALNT7	chr4	174169131	+
In-frame	ENST00000296504	ENST00000265000		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	SAP30	chr4	174295188	+	GALNT7	chr4	174169131	+
In-frame	ENST00000296504	ENST00000512285		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	SAP30	chr4	174295188	+	GALNT7	chr4	174169131	+
5CDS-intron	ENST00000296504	ENST00000502407		TCGA	LD	BLCA	TCGA-C4-A0F0-01A	SAP30	chr4	174295188	+	GALNT7	chr4	174169131	+
In-frame	ENST00000299300	ENST00000331471		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000299300	ENST00000488961		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000299300	ENST00000330891		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000299300	ENST00000553096		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000299300	ENST00000476098		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000299300	ENST00000266661		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000299300	ENST00000551160		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000299300	ENST00000393365		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000299300	ENST00000533674		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
In-frame	ENST00000544368	ENST00000331471		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000544368	ENST00000488961		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000544368	ENST00000330891		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000544368	ENST00000553096		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000544368	ENST00000476098		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000544368	ENST00000266661		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000544368	ENST00000551160		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000544368	ENST00000393365		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000544368	ENST00000533674		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
In-frame	ENST00000543146	ENST00000331471		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543146	ENST00000488961		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543146	ENST00000330891		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543146	ENST00000553096		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543146	ENST00000476098		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543146	ENST00000266661		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543146	ENST00000551160		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543146	ENST00000393365		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543146	ENST00000533674		TCGA	LD	BLCA	TCGA-C4-A0F6-01A	CCT2	chr12	69983467	+	BEST3	chr12	70072673	-
In-frame	ENST00000281129	ENST00000541158		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000281129	ENST00000342443		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000281129	ENST00000298171		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000281129	ENST00000554263		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000281129	ENST00000554435		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
5CDS-intron	ENST00000281129	ENST00000557096		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000555265	ENST00000541158		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000555265	ENST00000342443		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000555265	ENST00000298171		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000555265	ENST00000554263		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
In-frame	ENST00000555265	ENST00000554435		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
5CDS-intron	ENST00000555265	ENST00000557096		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000216517	ENST00000541158		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000216517	ENST00000342443		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000216517	ENST00000298171		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000216517	ENST00000554263		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000216517	ENST00000554435		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-intron	ENST00000216517	ENST00000557096		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000327841	ENST00000541158		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000327841	ENST00000342443		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000327841	ENST00000298171		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000327841	ENST00000554263		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000327841	ENST00000554435		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-intron	ENST00000327841	ENST00000557096		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000553717	ENST00000541158		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000553717	ENST00000342443		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000553717	ENST00000298171		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000553717	ENST00000554263		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000553717	ENST00000554435		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-intron	ENST00000553717	ENST00000557096		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	CEP128	chr14	81227781	-	TSHR	chr14	81562983	+
intron-3CDS	ENST00000402384	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000402384	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000402384	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000402384	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000402384	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000402384	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000402384	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000406470	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000406470	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000406470	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000406470	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000406470	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000406470	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000406470	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000265577	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000265577	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000265577	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000265577	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000265577	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000265577	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000265577	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000396675	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000396675	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000396675	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000396675	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000401396	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000401396	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000401396	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000401396	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000422063	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000422063	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000422063	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000422063	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000407906	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000407906	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000407906	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-3CDS	ENST00000407906	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000407906	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000407906	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
5UTR-intron	ENST00000407906	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000222390		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000457544		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000444829		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000476942	ENST00000453411		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000476942	ENST00000423064		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000476942	ENST00000354224		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-intron	ENST00000476942	ENST00000453018		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ICA1	chr7	8302070	-	HGF	chr7	81374436	-
intron-3CDS	ENST00000262764	ENST00000357814		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000580301		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000581136		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000580632		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000582870		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000578822		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000583757		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000582524		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-3CDS	ENST00000262764	ENST00000583476		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
intron-5UTR	ENST00000262764	ENST00000580216		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000357814		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000580301		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000581136		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000580632		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000582870		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000578822		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000583757		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000582524		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000329897	ENST00000583476		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-5UTR	ENST00000329897	ENST00000580216		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000357814		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000580301		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000581136		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000580632		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000582870		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000578822		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000583757		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000582524		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-3CDS	ENST00000588281	ENST00000583476		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
3UTR-5UTR	ENST00000588281	ENST00000580216		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	PGS1	chr17	76415806	+	NAT9	chr17	72769824	-
5CDS-intron	ENST00000358413	ENST00000400227		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000358413	ENST00000349736		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000358413	ENST00000217244		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000358413	ENST00000400217		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000278772	ENST00000400227		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000278772	ENST00000349736		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000278772	ENST00000217244		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000278772	ENST00000400217		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000381253	ENST00000400227		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000381253	ENST00000349736		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000381253	ENST00000217244		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5CDS-intron	ENST00000381253	ENST00000400217		TCGA	LD	BLCA	TCGA-C4-A0F7-01A	ZNF343	chr20	2473345	-	CSNK2A1	chr20	454594	-
5UTR-3CDS	ENST00000261507	ENST00000402744		TCGA	LD	BLCA	TCGA-CF-A1HR-01A	MSMO1	chr4	166248916	+	CPE	chr4	166385542	+
5UTR-3CDS	ENST00000393766	ENST00000402744		TCGA	LD	BLCA	TCGA-CF-A1HR-01A	MSMO1	chr4	166248916	+	CPE	chr4	166385542	+
5UTR-3CDS	ENST00000504317	ENST00000402744		TCGA	LD	BLCA	TCGA-CF-A1HR-01A	MSMO1	chr4	166248916	+	CPE	chr4	166385542	+
In-frame	ENST00000278618	ENST00000375706		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	AASDHPPT	chr11	105950419	+	CARD16	chr11	104915385	-
Frame-shit	ENST00000278618	ENST00000375704		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	AASDHPPT	chr11	105950419	+	CARD16	chr11	104915385	-
Frame-shit	ENST00000278618	ENST00000525374		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	AASDHPPT	chr11	105950419	+	CARD16	chr11	104915385	-
5CDS-5UTR	ENST00000394609	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000405240	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000357376	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000317610	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000357732	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000337526	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000394611	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000404909	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000486085	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000354474	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000402434	ENST00000557625		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	RTN4	chr2	55237223	-	FRMD6-AS2	chr14	52051001	-
intron-3CDS	ENST00000380913	ENST00000357277		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3CDS	ENST00000380913	ENST00000303843		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3CDS	ENST00000380913	ENST00000380064		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3UTR	ENST00000380913	ENST00000469714		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3CDS	ENST00000493668	ENST00000357277		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3CDS	ENST00000493668	ENST00000303843		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3CDS	ENST00000493668	ENST00000380064		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
intron-3UTR	ENST00000493668	ENST00000469714		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
5UTR-3CDS	ENST00000418909	ENST00000357277		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
5UTR-3CDS	ENST00000418909	ENST00000303843		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
5UTR-3CDS	ENST00000418909	ENST00000380064		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
5UTR-3UTR	ENST00000418909	ENST00000469714		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	SHROOM2	chrX	9880627	+	REPS2	chrX	17121841	+
5CDS-5UTR	ENST00000287218	ENST00000449981		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000287218	ENST00000359357		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000287218	ENST00000441566		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
5CDS-5UTR	ENST00000373391	ENST00000449981		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000373391	ENST00000359357		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000373391	ENST00000441566		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
intron-5UTR	ENST00000463847	ENST00000449981		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
intron-intron	ENST00000463847	ENST00000359357		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
intron-intron	ENST00000463847	ENST00000441566		TCGA	LD	BLCA	TCGA-CF-A1HS-01A	ZFAND3	chr6	37787792	+	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000481110	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
5CDS-intron	ENST00000440486	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
5CDS-intron	ENST00000412135	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
5CDS-intron	ENST00000340107	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
5CDS-intron	ENST00000260795	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
5CDS-intron	ENST00000352904	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
intron-intron	ENST00000474521	ENST00000313288		TCGA	LD	BLCA	TCGA-CF-A3MF-01A	FGFR3	chr4	1808925	+	TACC3	chr4	1741371	+
intron-3CDS	ENST00000314289	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000314289	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000314289	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000314289	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000314289	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000314289	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000314289	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000314289	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000541204	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000541204	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000541204	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000541204	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000541204	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000541204	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000541204	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000541204	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000509258	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000509258	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000509258	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000509258	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000509258	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000509258	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000509258	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000509258	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511843	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511843	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511843	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511843	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511843	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511843	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511843	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511843	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511859	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511859	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511859	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511859	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511859	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511859	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511859	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511859	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000506706	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000506706	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000506706	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000506706	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000506706	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000506706	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000506706	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000506706	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511600	ENST00000290974		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511600	ENST00000511071		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000511600	ENST00000515312		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511600	ENST00000515169		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511600	ENST00000509171		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511600	ENST00000503000		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511600	ENST00000508471		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000511600	ENST00000505421		TCGA	LD	BLCA	TCGA-CF-A47V-01A	RNF4	chr4	2598056	+	ZFYVE28	chr4	2321998	-
In-frame	ENST00000400485	ENST00000328619		TCGA	LD	BLCA	TCGA-CF-A47X-01A	MORC3	chr21	37692601	+	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000400485	ENST00000468717		TCGA	LD	BLCA	TCGA-CF-A47X-01A	MORC3	chr21	37692601	+	PCP4	chr21	41270401	+
3UTR-3CDS	ENST00000487909	ENST00000328619		TCGA	LD	BLCA	TCGA-CF-A47X-01A	MORC3	chr21	37692601	+	PCP4	chr21	41270401	+
3UTR-3UTR	ENST00000487909	ENST00000468717		TCGA	LD	BLCA	TCGA-CF-A47X-01A	MORC3	chr21	37692601	+	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000389327	ENST00000270189		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389327	ENST00000429089		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389327	ENST00000220809		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389327	ENST00000352041		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389327	ENST00000519510		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389327	ENST00000429710		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389327	ENST00000524009		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000270189		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000429089		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000220809		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000352041		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000519510		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000429710		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000389328	ENST00000524009		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000270189		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000429089		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000220809		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000352041		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000519510		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000429710		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
5CDS-3UTR	ENST00000438773	ENST00000524009		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000270189		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000429089		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000220809		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000352041		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000519510		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000429710		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3UTR	ENST00000522504	ENST00000524009		TCGA	LD	BLCA	TCGA-CF-A47X-01A	TRAPPC9	chr8	141370149	-	PLAT	chr8	42033669	-
intron-3CDS	ENST00000431809	ENST00000318562		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000431809	ENST00000533256		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000431809	ENST00000530636		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000431809	ENST00000526198		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-intron	ENST00000431809	ENST00000534449		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000397582	ENST00000318562		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000397582	ENST00000533256		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000397582	ENST00000530636		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000397582	ENST00000526198		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-intron	ENST00000397582	ENST00000534449		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
3UTR-3CDS	ENST00000524468	ENST00000318562		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
3UTR-3CDS	ENST00000524468	ENST00000533256		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
3UTR-3CDS	ENST00000524468	ENST00000530636		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
3UTR-3CDS	ENST00000524468	ENST00000526198		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
3UTR-intron	ENST00000524468	ENST00000534449		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000344375	ENST00000318562		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000344375	ENST00000533256		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000344375	ENST00000530636		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000344375	ENST00000526198		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-intron	ENST00000344375	ENST00000534449		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000397583	ENST00000318562		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000397583	ENST00000533256		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000397583	ENST00000530636		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000397583	ENST00000526198		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-intron	ENST00000397583	ENST00000534449		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000454668	ENST00000318562		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000454668	ENST00000533256		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000454668	ENST00000530636		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-3CDS	ENST00000454668	ENST00000526198		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
intron-intron	ENST00000454668	ENST00000534449		TCGA	LD	BLCA	TCGA-CF-A8HY-01A	RASSF7	chr11	561033	+	EPS8L2	chr11	722091	+
5UTR-3CDS	ENST00000261168	ENST00000240617		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ATF7IP	chr12	14518761	+	PLBD1	chr12	14664645	-
5UTR-3CDS	ENST00000543189	ENST00000240617		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ATF7IP	chr12	14518761	+	PLBD1	chr12	14664645	-
5UTR-3CDS	ENST00000536444	ENST00000240617		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ATF7IP	chr12	14518761	+	PLBD1	chr12	14664645	-
intron-3CDS	ENST00000544627	ENST00000240617		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ATF7IP	chr12	14518761	+	PLBD1	chr12	14664645	-
intron-3CDS	ENST00000541654	ENST00000240617		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ATF7IP	chr12	14518761	+	PLBD1	chr12	14664645	-
intron-3CDS	ENST00000540793	ENST00000240617		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ATF7IP	chr12	14518761	+	PLBD1	chr12	14664645	-
intron-5UTR	ENST00000398810	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000398810	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000439599	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000439599	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000398812	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000398812	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000335866	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000335866	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000402578	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000402578	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000403097	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000403097	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000406641	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000406641	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000357271	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000357271	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000407526	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000407526	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000401949	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5UTR-5UTR	ENST00000401949	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000402497	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
intron-5UTR	ENST00000402497	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5CDS-5UTR	ENST00000483819	ENST00000406890		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
5CDS-5UTR	ENST00000483819	ENST00000404369		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	GRB10	chr7	50823584	-	STEAP1B	chr7	22534505	-
Frame-shit	ENST00000267102	ENST00000263372		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
5CDS-intron	ENST00000267102	ENST00000588137		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
Frame-shit	ENST00000547382	ENST00000263372		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
5CDS-intron	ENST00000547382	ENST00000588137		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
intron-3CDS	ENST00000395141	ENST00000263372		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
intron-intron	ENST00000395141	ENST00000588137		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
5UTR-3CDS	ENST00000553204	ENST00000263372		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
5UTR-intron	ENST00000553204	ENST00000588137		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	LMBR1L	chr12	49504267	-	KCNK6	chr19	38817233	+
Frame-shit	ENST00000424085	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000424085	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000257075	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000257075	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000373747	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000373747	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000426105	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000426105	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000440538	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000440538	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
In-frame	ENST00000373741	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000373741	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000423018	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000423018	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
In-frame	ENST00000373742	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000373742	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
intron-3CDS	ENST00000490546	ENST00000294507		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
intron-5UTR	ENST00000490546	ENST00000476492		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	PUM1	chr1	31501643	-	LAPTM5	chr1	31215396	-
In-frame	ENST00000280871	ENST00000277165		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000280871	ENST00000375389		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000280871	ENST00000340893		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000280871	ENST00000333936		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000280871	ENST00000475933		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
In-frame	ENST00000380858	ENST00000277165		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000380858	ENST00000375389		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000380858	ENST00000340893		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000380858	ENST00000333936		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-intron	ENST00000380858	ENST00000475933		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	FAM120A	chr9	96323391	+
5CDS-5UTR	ENST00000280871	ENST00000598312		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	ZNF329	chr19	58654028	-
5CDS-5UTR	ENST00000280871	ENST00000358067		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	ZNF329	chr19	58654028	-
5CDS-5UTR	ENST00000380858	ENST00000598312		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	ZNF329	chr19	58654028	-
5CDS-5UTR	ENST00000380858	ENST00000358067		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	SLC2A13	chr12	40422103	-	ZNF329	chr19	58654028	-
intron-intron	ENST00000341164	ENST00000415061		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000341164	ENST00000396247		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000341164	ENST00000592423		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000536132	ENST00000415061		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000536132	ENST00000396247		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000536132	ENST00000592423		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000552579	ENST00000415061		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000552579	ENST00000396247		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000552579	ENST00000592423		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000547828	ENST00000415061		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000547828	ENST00000396247		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000547828	ENST00000592423		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000547121	ENST00000415061		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000547121	ENST00000396247		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000547121	ENST00000592423		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000546715	ENST00000415061		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000546715	ENST00000396247		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
intron-intron	ENST00000546715	ENST00000592423		TCGA	LD	BLCA	TCGA-CU-A0YN-01A	ZNF606	chr19	58491530	-	RDH13	chr19	55579083	-
Frame-shit	ENST00000506502	ENST00000378662		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	RBM27	chr5	145598666	+	SLC35E2B	chr1	1597458	-
Frame-shit	ENST00000506502	ENST00000234800		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	RBM27	chr5	145598666	+	SLC35E2B	chr1	1597458	-
Frame-shit	ENST00000265271	ENST00000378662		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	RBM27	chr5	145598666	+	SLC35E2B	chr1	1597458	-
Frame-shit	ENST00000265271	ENST00000234800		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	RBM27	chr5	145598666	+	SLC35E2B	chr1	1597458	-
Frame-shit	ENST00000438552	ENST00000366690		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	SNRPB	chr20	2451334	-	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000438552	ENST00000473894		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	SNRPB	chr20	2451334	-	RAB4A	chr1	229422233	+
Frame-shit	ENST00000381342	ENST00000366690		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	SNRPB	chr20	2451334	-	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000381342	ENST00000473894		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	SNRPB	chr20	2451334	-	RAB4A	chr1	229422233	+
5UTR-3CDS	ENST00000339610	ENST00000366690		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	SNRPB	chr20	2451334	-	RAB4A	chr1	229422233	+
5UTR-intron	ENST00000339610	ENST00000473894		TCGA	LD	BLCA	TCGA-CU-A0YO-01A	SNRPB	chr20	2451334	-	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000557021	ENST00000316020		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000557021	ENST00000472329		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000371650	ENST00000316020		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000371650	ENST00000472329		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000371652	ENST00000316020		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000371652	ENST00000472329		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000371656	ENST00000316020		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5CDS-intron	ENST00000371656	ENST00000472329		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	TMEM189	chr20	48746083	-	OFCC1	chr6	9776122	-
5UTR-3CDS	ENST00000559237	ENST00000419617		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000559237	ENST00000523601		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-intron	ENST00000559237	ENST00000521768		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000267807	ENST00000419617		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000267807	ENST00000523601		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-intron	ENST00000267807	ENST00000521768		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
intron-3CDS	ENST00000559000	ENST00000419617		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
intron-3CDS	ENST00000559000	ENST00000523601		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
intron-intron	ENST00000559000	ENST00000521768		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000396245	ENST00000419617		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000396245	ENST00000523601		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-intron	ENST00000396245	ENST00000521768		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000558320	ENST00000419617		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-3CDS	ENST00000558320	ENST00000523601		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
5UTR-intron	ENST00000558320	ENST00000521768		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
intron-3CDS	ENST00000561122	ENST00000419617		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
intron-3CDS	ENST00000561122	ENST00000523601		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
intron-intron	ENST00000561122	ENST00000521768		TCGA	LD	BLCA	TCGA-CU-A0YR-01A	ZNF280D	chr15	57025656	-	STK3	chr8	99719539	-
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000358691	ENST00000535342		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000358691	ENST00000392769		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000358691	ENST00000541355		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000358691	ENST00000537949		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000358691	ENST00000317442		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000358691	ENST00000580482		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000580168	ENST00000535342		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000580168	ENST00000392769		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000580168	ENST00000541355		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000580168	ENST00000537949		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
In-frame	ENST00000580168	ENST00000317442		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000580168	ENST00000580482		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000580662	ENST00000535342		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000580662	ENST00000392769		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000580662	ENST00000541355		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000580662	ENST00000537949		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000580662	ENST00000317442		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-5UTR	ENST00000580662	ENST00000580482		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	HELZ	chr17	65116521	-	CEP112	chr17	63685336	-
intron-3UTR	ENST00000478753	ENST00000263025		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000478753	ENST00000484663		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000478753	ENST00000322266		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000478753	ENST00000403394		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000478753	ENST00000494643		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000478753	ENST00000395200		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000478753	ENST00000395202		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000478753	ENST00000395199		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000542752	ENST00000263025		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000542752	ENST00000484663		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000542752	ENST00000322266		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000542752	ENST00000403394		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000542752	ENST00000494643		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000542752	ENST00000395200		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000542752	ENST00000395202		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000542752	ENST00000395199		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000500504	ENST00000263025		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000500504	ENST00000484663		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000500504	ENST00000322266		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-3UTR	ENST00000500504	ENST00000403394		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000500504	ENST00000494643		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000500504	ENST00000395200		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000500504	ENST00000395202		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
intron-intron	ENST00000500504	ENST00000395199		TCGA	LD	BLCA	TCGA-CU-A3KJ-01A	SEPHS2	chr16	30456543	-	MAPK3	chr16	30125698	-
Frame-shit	ENST00000297423	ENST00000523111		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000521346		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000517630		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000520809		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000518074	ENST00000523111		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000521346		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000517630		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000520809		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000541342	ENST00000523111		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000521346		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000517630		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000520809		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
3UTR-3CDS	ENST00000521214	ENST00000523111		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000521346		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000517630		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000520809		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000517693	ENST00000523111		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000517693	ENST00000521346		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000517693	ENST00000517630		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000517693	ENST00000520809		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000518060	ENST00000523111		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000521346		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000517630		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000520809		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	SPIDR	chr8	48206619	+	UBE2V2	chr8	48955593	+
5UTR-3CDS	ENST00000420415	ENST00000348697		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000420415	ENST00000402984		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000420415	ENST00000262722		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000420415	ENST00000327858		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000420415	ENST00000442170		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000420415	ENST00000340923		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-intron	ENST00000420415	ENST00000476366		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000360110	ENST00000348697		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000360110	ENST00000402984		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000360110	ENST00000262722		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000360110	ENST00000327858		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000360110	ENST00000442170		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000360110	ENST00000340923		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-intron	ENST00000360110	ENST00000476366		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000540528	ENST00000348697		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000540528	ENST00000402984		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000540528	ENST00000262722		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000540528	ENST00000327858		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000540528	ENST00000442170		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000540528	ENST00000340923		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-intron	ENST00000540528	ENST00000476366		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000392396	ENST00000348697		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000392396	ENST00000402984		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000392396	ENST00000262722		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000392396	ENST00000327858		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000392396	ENST00000442170		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000392396	ENST00000340923		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-intron	ENST00000392396	ENST00000476366		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000535031	ENST00000348697		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000535031	ENST00000402984		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000535031	ENST00000262722		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000535031	ENST00000327858		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000535031	ENST00000442170		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-3CDS	ENST00000535031	ENST00000340923		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5UTR-intron	ENST00000535031	ENST00000476366		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000465288	ENST00000348697		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000465288	ENST00000402984		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000465288	ENST00000262722		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000465288	ENST00000327858		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000465288	ENST00000442170		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000465288	ENST00000340923		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
intron-intron	ENST00000465288	ENST00000476366		TCGA	LD	BLCA	TCGA-CU-A3QU-01A	TFRC	chr3	195808914	-	FBLN1	chr22	45914562	+
5CDS-5UTR	ENST00000263773	ENST00000375400		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5CDS-5UTR	ENST00000263773	ENST00000375398		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5CDS-5UTR	ENST00000263773	ENST00000355867		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5CDS-intron	ENST00000263773	ENST00000535393		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5CDS-intron	ENST00000263773	ENST00000460007		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5CDS-intron	ENST00000263773	ENST00000538146		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5UTR-5UTR	ENST00000534003	ENST00000375400		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5UTR-5UTR	ENST00000534003	ENST00000375398		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5UTR-5UTR	ENST00000534003	ENST00000355867		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5UTR-intron	ENST00000534003	ENST00000535393		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5UTR-intron	ENST00000534003	ENST00000460007		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
5UTR-intron	ENST00000534003	ENST00000538146		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	FNBP4	chr11	47786822	-	SVIL	chr10	29858241	-
In-frame	ENST00000314167	ENST00000505658		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000314167	ENST00000393227		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000314167	ENST00000311571		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000314167	ENST00000240304		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
5CDS-intron	ENST00000314167	ENST00000544170		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
5CDS-intron	ENST00000314167	ENST00000503798		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000511163	ENST00000505658		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000511163	ENST00000393227		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000511163	ENST00000311571		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000511163	ENST00000240304		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
5CDS-intron	ENST00000511163	ENST00000544170		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
5CDS-intron	ENST00000511163	ENST00000503798		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
intron-3CDS	ENST00000509566	ENST00000505658		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
intron-3CDS	ENST00000509566	ENST00000393227		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
intron-3CDS	ENST00000509566	ENST00000311571		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
intron-3CDS	ENST00000509566	ENST00000240304		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
intron-intron	ENST00000509566	ENST00000544170		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
intron-intron	ENST00000509566	ENST00000503798		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	GAK	chr4	925831	-	LUC7L3	chr17	48814321	+
In-frame	ENST00000358026	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000358026	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000344626	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000344626	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000429416	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000429416	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000541122	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000541122	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000589677	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000589677	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000444061	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000444061	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000590574	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000590574	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000413806	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000413806	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000450717	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
In-frame	ENST00000450717	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	LD	BLCA	TCGA-CU-A5W6-01A	SMARCA4	chr19	11138626	+	CARM1	chr19	11015627	+
5CDS-5UTR	ENST00000321599	ENST00000418115		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-5UTR	ENST00000321599	ENST00000454011		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-5UTR	ENST00000321599	ENST00000422781		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-intron	ENST00000321599	ENST00000265538		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000395238	ENST00000418115		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000395238	ENST00000454011		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000395238	ENST00000422781		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-intron	ENST00000395238	ENST00000265538		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-5UTR	ENST00000468463	ENST00000418115		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-5UTR	ENST00000468463	ENST00000454011		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-5UTR	ENST00000468463	ENST00000422781		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
5CDS-intron	ENST00000468463	ENST00000265538		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000460540	ENST00000418115		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000460540	ENST00000454011		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000460540	ENST00000422781		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-intron	ENST00000460540	ENST00000265538		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000498149	ENST00000418115		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000498149	ENST00000454011		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000498149	ENST00000422781		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
intron-intron	ENST00000498149	ENST00000265538		TCGA	LD	BLCA	TCGA-CU-A72E-01A	IP6K1	chr3	49785251	-	RHOA	chr3	49413024	-
Frame-shit	ENST00000401695	ENST00000392452		TCGA	LD	BLCA	TCGA-CU-A72E-01A	RPS14	chr5	149826365	-	MB21D2	chr3	192517439	-
Frame-shit	ENST00000407193	ENST00000392452		TCGA	LD	BLCA	TCGA-CU-A72E-01A	RPS14	chr5	149826365	-	MB21D2	chr3	192517439	-
Frame-shit	ENST00000312037	ENST00000392452		TCGA	LD	BLCA	TCGA-CU-A72E-01A	RPS14	chr5	149826365	-	MB21D2	chr3	192517439	-
5CDS-intron	ENST00000371730	ENST00000371586		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371730	ENST00000284376		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371730	ENST00000460261		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371730	ENST00000438831		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371733	ENST00000371586		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371733	ENST00000284376		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371733	ENST00000460261		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5CDS-intron	ENST00000371733	ENST00000438831		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000396122	ENST00000371586		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000396122	ENST00000284376		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000396122	ENST00000460261		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000396122	ENST00000438831		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000493793	ENST00000371586		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000493793	ENST00000284376		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000493793	ENST00000460261		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
intron-intron	ENST00000493793	ENST00000438831		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	EPS15	chr1	51984871	-	CC2D1B	chr1	52811875	-
5UTR-5UTR	ENST00000474874	ENST00000418342		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-5UTR	ENST00000474874	ENST00000302291		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-intron	ENST00000474874	ENST00000314174		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-intron	ENST00000474874	ENST00000374623		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-5UTR	ENST00000377482	ENST00000418342		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-5UTR	ENST00000377482	ENST00000302291		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-intron	ENST00000377482	ENST00000314174		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-intron	ENST00000377482	ENST00000374623		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
intron-5UTR	ENST00000467067	ENST00000418342		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
intron-5UTR	ENST00000467067	ENST00000302291		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
intron-intron	ENST00000467067	ENST00000314174		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
intron-intron	ENST00000467067	ENST00000374623		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-5UTR	ENST00000469499	ENST00000418342		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-5UTR	ENST00000469499	ENST00000302291		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-intron	ENST00000469499	ENST00000314174		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
5UTR-intron	ENST00000469499	ENST00000374623		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	ERRFI1	chr1	8086218	-	LUZP1	chr1	23435620	-
Frame-shit	ENST00000215071	ENST00000178640		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000215071	ENST00000560591		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000215071	ENST00000395476		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000215071	ENST00000354498		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000215071	ENST00000340972		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
Frame-shit	ENST00000602911	ENST00000178640		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000602911	ENST00000560591		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000602911	ENST00000395476		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000602911	ENST00000354498		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000602911	ENST00000340972		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
Frame-shit	ENST00000592035	ENST00000178640		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000592035	ENST00000560591		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000592035	ENST00000395476		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000592035	ENST00000354498		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000592035	ENST00000340972		TCGA	LD	BLCA	TCGA-DK-A1A3-01A	PSMD8	chr19	38872868	+	MAP2K5	chr15	68098984	+
Frame-shit	ENST00000240316	ENST00000300900		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	COIL	chr17	55038136	-	CA4	chr17	58232675	+
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	BLCA	TCGA-DK-A1A5-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5UTR-3CDS	ENST00000412460	ENST00000522909		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
5UTR-intron	ENST00000412460	ENST00000324682		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
5UTR-intron	ENST00000412460	ENST00000517834		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
In-frame	ENST00000262210	ENST00000522909		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
5CDS-intron	ENST00000262210	ENST00000324682		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
5CDS-intron	ENST00000262210	ENST00000517834		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
intron-3CDS	ENST00000521168	ENST00000522909		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
intron-intron	ENST00000521168	ENST00000324682		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
intron-intron	ENST00000521168	ENST00000517834		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	CSPP1	chr8	67976731	+	PPP1R42	chr8	67883375	-
intron-3CDS	ENST00000545187	ENST00000318607		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-3CDS	ENST00000545187	ENST00000519004		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-3CDS	ENST00000545187	ENST00000522387		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-intron	ENST00000545187	ENST00000519596		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000338128	ENST00000318607		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000338128	ENST00000519004		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000338128	ENST00000522387		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-intron	ENST00000338128	ENST00000519596		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000457269	ENST00000318607		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000457269	ENST00000519004		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000457269	ENST00000522387		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-intron	ENST00000457269	ENST00000519596		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-3CDS	ENST00000578963	ENST00000318607		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-3CDS	ENST00000578963	ENST00000519004		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-3CDS	ENST00000578963	ENST00000522387		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
intron-intron	ENST00000578963	ENST00000519596		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000317018	ENST00000318607		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000317018	ENST00000519004		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000317018	ENST00000522387		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-intron	ENST00000317018	ENST00000519596		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ISYNA1	chr19	18548903	-	PABPC1	chr8	101721451	-
5UTR-3CDS	ENST00000571669	ENST00000437048		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-intron	ENST00000571669	ENST00000574029		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000571669	ENST00000576149		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000571669	ENST00000446250		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000571669	ENST00000291074		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000571669	ENST00000571805		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000571669	ENST00000401468		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-3CDS	ENST00000263092	ENST00000437048		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-intron	ENST00000263092	ENST00000574029		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000263092	ENST00000576149		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000263092	ENST00000446250		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000263092	ENST00000291074		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000263092	ENST00000571805		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000263092	ENST00000401468		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-3CDS	ENST00000538844	ENST00000437048		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-intron	ENST00000538844	ENST00000574029		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000538844	ENST00000576149		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000538844	ENST00000446250		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000538844	ENST00000291074		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000538844	ENST00000571805		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5UTR-5UTR	ENST00000538844	ENST00000401468		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	METTL16	chr17	2415053	-	VPS53	chr17	463813	-
5CDS-intron	ENST00000310614	ENST00000533902		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000310614	ENST00000280258		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000310614	ENST00000441050		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000310614	ENST00000531521		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000535529	ENST00000533902		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000535529	ENST00000280258		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000535529	ENST00000441050		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000535529	ENST00000531521		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000411840	ENST00000533902		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000411840	ENST00000280258		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000411840	ENST00000441050		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5UTR-intron	ENST00000411840	ENST00000531521		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000398483	ENST00000533902		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000398483	ENST00000280258		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000398483	ENST00000441050		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000398483	ENST00000531521		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000542303	ENST00000533902		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000542303	ENST00000280258		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000542303	ENST00000441050		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
5CDS-intron	ENST00000542303	ENST00000531521		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000314282	ENST00000533902		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000314282	ENST00000280258		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000314282	ENST00000441050		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
intron-intron	ENST00000314282	ENST00000531521		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	MRPL48	chr11	73519395	+	PRSS23	chr11	86643737	+
In-frame	ENST00000419617	ENST00000310614		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000419617	ENST00000535529		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000419617	ENST00000411840		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000419617	ENST00000398483		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000419617	ENST00000542303		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
5CDS-intron	ENST00000419617	ENST00000314282		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-3CDS	ENST00000523601	ENST00000310614		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000523601	ENST00000535529		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000523601	ENST00000411840		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000523601	ENST00000398483		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000523601	ENST00000542303		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-intron	ENST00000523601	ENST00000314282		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-3CDS	ENST00000521768	ENST00000310614		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000521768	ENST00000535529		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000521768	ENST00000411840		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000521768	ENST00000398483		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000521768	ENST00000542303		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
intron-intron	ENST00000521768	ENST00000314282		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	STK3	chr8	99837743	-	MRPL48	chr11	73516072	+
Frame-shit	ENST00000395996	ENST00000595618		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000395996	ENST00000594824		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000395996	ENST00000397274		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
5CDS-intron	ENST00000395996	ENST00000593411		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000358544	ENST00000595618		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000358544	ENST00000594824		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000358544	ENST00000397274		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
5CDS-intron	ENST00000358544	ENST00000593411		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000357162	ENST00000595618		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000357162	ENST00000594824		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000357162	ENST00000397274		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
5CDS-intron	ENST00000357162	ENST00000593411		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000355155	ENST00000595618		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000355155	ENST00000594824		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
Frame-shit	ENST00000355155	ENST00000397274		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
5CDS-intron	ENST00000355155	ENST00000593411		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
intron-3CDS	ENST00000441350	ENST00000595618		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
intron-3CDS	ENST00000441350	ENST00000594824		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
intron-3CDS	ENST00000441350	ENST00000397274		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
intron-intron	ENST00000441350	ENST00000593411		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
3UTR-3CDS	ENST00000521932	ENST00000595618		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
3UTR-3CDS	ENST00000521932	ENST00000594824		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
3UTR-3CDS	ENST00000521932	ENST00000397274		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
3UTR-intron	ENST00000521932	ENST00000593411		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	VPS13B	chr8	100205285	+	MYO9B	chr19	17322456	+
intron-intron	ENST00000395867	ENST00000181796		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000378470		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000468747		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000395867	ENST00000378467		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000378465		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000395867	ENST00000378458		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000478076		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000378462		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000395867	ENST00000496330		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000479731		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000395867	ENST00000471815		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000181796		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000378470		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000468747		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000374648	ENST00000378467		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000378465		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000374648	ENST00000378458		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000478076		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000378462		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000374648	ENST00000496330		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000479731		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000374648	ENST00000471815		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000181796		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000378470		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000468747		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000357328	ENST00000378467		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000378465		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000357328	ENST00000378458		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000478076		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000378462		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-5UTR	ENST00000357328	ENST00000496330		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000479731		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
intron-intron	ENST00000357328	ENST00000471815		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000181796		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000378470		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000468747		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-5UTR	ENST00000494133	ENST00000378467		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000378465		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-5UTR	ENST00000494133	ENST00000378458		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000478076		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000378462		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-5UTR	ENST00000494133	ENST00000496330		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000479731		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
5UTR-intron	ENST00000494133	ENST00000471815		TCGA	LD	BLCA	TCGA-DK-A1A6-01A	ZNF248	chr10	38120160	-	FAM107B	chr10	14595386	-
Frame-shit	ENST00000297814	ENST00000376395		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
Frame-shit	ENST00000297814	ENST00000257468		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
Frame-shit	ENST00000413982	ENST00000376395		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
Frame-shit	ENST00000413982	ENST00000257468		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
Frame-shit	ENST00000334204	ENST00000376395		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
Frame-shit	ENST00000334204	ENST00000257468		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
intron-3CDS	ENST00000376347	ENST00000376395		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
intron-3CDS	ENST00000376347	ENST00000257468		TCGA	LD	BLCA	TCGA-DK-A1A7-01A	KIF27	chr9	86465014	-	UBQLN1	chr9	86284242	-
Frame-shit	ENST00000264485	ENST00000305363		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	SLC4A4	chr4	72102366	+	TMPRSS11E	chr4	69327539	+
Frame-shit	ENST00000425175	ENST00000305363		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	SLC4A4	chr4	72102366	+	TMPRSS11E	chr4	69327539	+
Frame-shit	ENST00000351898	ENST00000305363		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	SLC4A4	chr4	72102366	+	TMPRSS11E	chr4	69327539	+
intron-3CDS	ENST00000340595	ENST00000305363		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	SLC4A4	chr4	72102366	+	TMPRSS11E	chr4	69327539	+
intron-3CDS	ENST00000514331	ENST00000305363		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	SLC4A4	chr4	72102366	+	TMPRSS11E	chr4	69327539	+
intron-3CDS	ENST00000512686	ENST00000305363		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	SLC4A4	chr4	72102366	+	TMPRSS11E	chr4	69327539	+
Frame-shit	ENST00000261716	ENST00000025008		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
Frame-shit	ENST00000261716	ENST00000435644		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
5CDS-intron	ENST00000261716	ENST00000521611		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
5CDS-intron	ENST00000261716	ENST00000539297		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
Frame-shit	ENST00000536202	ENST00000025008		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
Frame-shit	ENST00000536202	ENST00000435644		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
5CDS-intron	ENST00000536202	ENST00000521611		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
5CDS-intron	ENST00000536202	ENST00000539297		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TAOK1	chr17	27809306	+	RB1CC1	chr8	53555372	-
5CDS-5UTR	ENST00000377376	ENST00000328089		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000377376	ENST00000357898		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000377376	ENST00000377399		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000340305	ENST00000328089		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000340305	ENST00000357898		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000340305	ENST00000377399		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000340381	ENST00000328089		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000340381	ENST00000357898		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000340381	ENST00000377399		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
intron-5UTR	ENST00000510900	ENST00000328089		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
intron-5UTR	ENST00000510900	ENST00000357898		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
intron-5UTR	ENST00000510900	ENST00000377399		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TMEM201	chr1	9662330	+	SPSB1	chr1	9415802	+
3UTR-3CDS	ENST00000294309	ENST00000318217		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-3CDS	ENST00000294309	ENST00000394649		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-3CDS	ENST00000294309	ENST00000579584		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-intron	ENST00000294309	ENST00000584232		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-intron	ENST00000294309	ENST00000583621		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
intron-3CDS	ENST00000542467	ENST00000318217		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
intron-3CDS	ENST00000542467	ENST00000394649		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
intron-3CDS	ENST00000542467	ENST00000579584		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
intron-intron	ENST00000542467	ENST00000584232		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
intron-intron	ENST00000542467	ENST00000583621		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-3CDS	ENST00000442692	ENST00000318217		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-3CDS	ENST00000442692	ENST00000394649		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-3CDS	ENST00000442692	ENST00000579584		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-intron	ENST00000442692	ENST00000584232		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
3UTR-intron	ENST00000442692	ENST00000583621		TCGA	LD	BLCA	TCGA-DK-A1AC-01A	TPCN2	chr11	68855834	+	MYO1D	chr17	30932259	-
In-frame	ENST00000397010	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397010	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397010	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000397010	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000309576	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000309576	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000309576	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000309576	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397015	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397015	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397015	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000397015	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397012	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397012	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397012	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000397012	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397026	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397026	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000397026	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000397026	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000397000	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000397000	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000397000	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-intron	ENST00000397000	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000539812	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000539812	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-3CDS	ENST00000539812	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
intron-intron	ENST00000539812	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000287820	ENST00000274695		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000287820	ENST00000378624		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
In-frame	ENST00000287820	ENST00000378610		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5CDS-intron	ENST00000287820	ENST00000476517		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	PPARG	chr3	12458653	+	CDKAL1	chr6	20649524	+
5UTR-5UTR	ENST00000601241	ENST00000300853		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000601241	ENST00000423698		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
5UTR-intron	ENST00000601241	ENST00000588738		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000601241	ENST00000340192		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000601241	ENST00000591636		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000601241	ENST00000589165		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000601241	ENST00000013807		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000595326	ENST00000300853		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000595326	ENST00000423698		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-intron	ENST00000595326	ENST00000588738		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000595326	ENST00000340192		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000595326	ENST00000591636		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000595326	ENST00000589165		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000595326	ENST00000013807		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000379204	ENST00000300853		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000379204	ENST00000423698		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-intron	ENST00000379204	ENST00000588738		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000379204	ENST00000340192		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000379204	ENST00000591636		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000379204	ENST00000589165		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
intron-5UTR	ENST00000379204	ENST00000013807		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	SCGB2B2	chr19	35166535	-	ERCC1	chr19	45926639	-
3UTR-3UTR	ENST00000453168	ENST00000489408		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	STT3B	chr3	31574804	+	ZNF860	chr3	32030152	+
3UTR-5UTR	ENST00000453168	ENST00000360311		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	STT3B	chr3	31574804	+	ZNF860	chr3	32030152	+
5CDS-3UTR	ENST00000295770	ENST00000489408		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	STT3B	chr3	31574804	+	ZNF860	chr3	32030152	+
5CDS-5UTR	ENST00000295770	ENST00000360311		TCGA	LD	BLCA	TCGA-DK-A1AD-01A	STT3B	chr3	31574804	+	ZNF860	chr3	32030152	+
5UTR-intron	ENST00000361490	ENST00000483923		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000361490	ENST00000370575		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000325103	ENST00000483923		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000325103	ENST00000370575		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000467246	ENST00000483923		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000467246	ENST00000370575		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000338546	ENST00000483923		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
5UTR-intron	ENST00000338546	ENST00000370575		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	HPS1	chr10	100206566	-	PYROXD2	chr10	100148267	-
Frame-shit	ENST00000258399	ENST00000171887		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000258399	ENST00000419504		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000258399	ENST00000430930		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000258399	ENST00000310858		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000258399	ENST00000480665		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000454775	ENST00000171887		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000454775	ENST00000419504		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000454775	ENST00000430930		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000454775	ENST00000310858		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000454775	ENST00000480665		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-3CDS	ENST00000415516	ENST00000171887		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-3CDS	ENST00000415516	ENST00000419504		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-3CDS	ENST00000415516	ENST00000430930		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-intron	ENST00000415516	ENST00000310858		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-intron	ENST00000415516	ENST00000480665		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000418019	ENST00000171887		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000418019	ENST00000419504		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000418019	ENST00000430930		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000418019	ENST00000310858		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000418019	ENST00000480665		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000338465	ENST00000171887		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000338465	ENST00000419504		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
Frame-shit	ENST00000338465	ENST00000430930		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000338465	ENST00000310858		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000338465	ENST00000480665		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-3CDS	ENST00000475553	ENST00000171887		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-3CDS	ENST00000475553	ENST00000419504		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-3CDS	ENST00000475553	ENST00000430930		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-intron	ENST00000475553	ENST00000310858		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
intron-intron	ENST00000475553	ENST00000480665		TCGA	LD	BLCA	TCGA-DK-A1AE-01A	USP37	chr2	219423221	-	TNS1	chr2	218700934	-
5CDS-intron	ENST00000334126	ENST00000441339		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000334126	ENST00000308946		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000334126	ENST00000535407		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000334126	ENST00000541137		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000313663	ENST00000441339		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000313663	ENST00000308946		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000313663	ENST00000535407		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000313663	ENST00000541137		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000542452	ENST00000441339		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000542452	ENST00000308946		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000542452	ENST00000535407		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000542452	ENST00000541137		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000539061	ENST00000441339		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000539061	ENST00000308946		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000539061	ENST00000535407		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000539061	ENST00000541137		TCGA	LD	BLCA	TCGA-DK-A1AF-01A	C2CD3	chr11	73759250	-	MYEOV	chr11	69156278	+
5UTR-5UTR	ENST00000375482	ENST00000375751		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
5UTR-5UTR	ENST00000375482	ENST00000375754		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
5UTR-5UTR	ENST00000375482	ENST00000375747		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
5UTR-3UTR	ENST00000375482	ENST00000476708		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
5UTR-5UTR	ENST00000375482	ENST00000375746		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000416701	ENST00000375751		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000416701	ENST00000375754		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000416701	ENST00000375747		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-3UTR	ENST00000416701	ENST00000476708		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000416701	ENST00000375746		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000468206	ENST00000375751		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000468206	ENST00000375754		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000468206	ENST00000375747		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-3UTR	ENST00000468206	ENST00000476708		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000468206	ENST00000375746		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000337352	ENST00000375751		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000337352	ENST00000375754		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000337352	ENST00000375747		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-3UTR	ENST00000337352	ENST00000476708		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000337352	ENST00000375746		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000538555	ENST00000375751		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000538555	ENST00000375754		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000538555	ENST00000375747		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-3UTR	ENST00000538555	ENST00000476708		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000538555	ENST00000375746		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	FGD3	chr9	95710011	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000320394	ENST00000510238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	IQCK	chr16	19775434	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000564186	ENST00000510238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	IQCK	chr16	19775434	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000541926	ENST00000510238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	IQCK	chr16	19775434	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000433597	ENST00000510238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	IQCK	chr16	19775434	+	CASC16	chr16	52624979	-
3UTR-5UTR	ENST00000562762	ENST00000510238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	IQCK	chr16	19775434	+	CASC16	chr16	52624979	-
5UTR-3CDS	ENST00000349945	ENST00000219299		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
5UTR-3CDS	ENST00000349945	ENST00000443128		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
5UTR-3UTR	ENST00000349945	ENST00000566498		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
Frame-shit	ENST00000432919	ENST00000219299		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
Frame-shit	ENST00000432919	ENST00000443128		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
5CDS-3UTR	ENST00000432919	ENST00000566498		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3CDS	ENST00000354436	ENST00000219299		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3CDS	ENST00000354436	ENST00000443128		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3UTR	ENST00000354436	ENST00000566498		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
Frame-shit	ENST00000567239	ENST00000219299		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
Frame-shit	ENST00000567239	ENST00000443128		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
5CDS-3UTR	ENST00000567239	ENST00000566498		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3CDS	ENST00000393742	ENST00000219299		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3CDS	ENST00000393742	ENST00000443128		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3UTR	ENST00000393742	ENST00000566498		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3CDS	ENST00000566899	ENST00000219299		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3CDS	ENST00000566899	ENST00000443128		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
intron-3UTR	ENST00000566899	ENST00000566498		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	NFAT5	chr16	69602451	+	CCDC113	chr16	58286631	+
5CDS-3UTR	ENST00000270066	ENST00000262888		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SMG9	chr19	44241749	-	KCNN4	chr19	44271241	-
5CDS-3UTR	ENST00000601170	ENST00000262888		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SMG9	chr19	44241749	-	KCNN4	chr19	44271241	-
Frame-shit	ENST00000538630	ENST00000377242		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
In-frame	ENST00000538630	ENST00000377252		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
5CDS-3UTR	ENST00000538630	ENST00000377238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
intron-3CDS	ENST00000376601	ENST00000377242		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
intron-3CDS	ENST00000376601	ENST00000377252		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
intron-3UTR	ENST00000376601	ENST00000377238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
Frame-shit	ENST00000376603	ENST00000377242		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
In-frame	ENST00000376603	ENST00000377252		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
5CDS-3UTR	ENST00000376603	ENST00000377238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
Frame-shit	ENST00000376624	ENST00000377242		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
In-frame	ENST00000376624	ENST00000377252		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
5CDS-3UTR	ENST00000376624	ENST00000377238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
Frame-shit	ENST00000313311	ENST00000377242		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
In-frame	ENST00000313311	ENST00000377252		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
5CDS-3UTR	ENST00000313311	ENST00000377238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
intron-3CDS	ENST00000490361	ENST00000377242		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
intron-3CDS	ENST00000490361	ENST00000377252		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
intron-3UTR	ENST00000490361	ENST00000377238		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	SPAG6	chr10	22657607	+	PLXDC2	chr10	20568632	+
5CDS-intron	ENST00000219478	ENST00000336577		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	ZNF500	chr16	4810493	-	MMP25	chr16	3105831	+
5CDS-3UTR	ENST00000219478	ENST00000570755		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	ZNF500	chr16	4810493	-	MMP25	chr16	3105831	+
intron-intron	ENST00000591026	ENST00000336577		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	ZNF500	chr16	4810493	-	MMP25	chr16	3105831	+
intron-3UTR	ENST00000591026	ENST00000570755		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	ZNF500	chr16	4810493	-	MMP25	chr16	3105831	+
5CDS-intron	ENST00000545009	ENST00000336577		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	ZNF500	chr16	4810493	-	MMP25	chr16	3105831	+
5CDS-3UTR	ENST00000545009	ENST00000570755		TCGA	LD	BLCA	TCGA-DK-A2I1-01A	ZNF500	chr16	4810493	-	MMP25	chr16	3105831	+
5CDS-intron	ENST00000225388	ENST00000484445		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	NUFIP2	chr17	27620801	-	ZFP69B	chr1	40916328	+
5CDS-intron	ENST00000225388	ENST00000361584		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	NUFIP2	chr17	27620801	-	ZFP69B	chr1	40916328	+
5CDS-5UTR	ENST00000225388	ENST00000411995		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	NUFIP2	chr17	27620801	-	ZFP69B	chr1	40916328	+
5CDS-intron	ENST00000579665	ENST00000484445		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	NUFIP2	chr17	27620801	-	ZFP69B	chr1	40916328	+
5CDS-intron	ENST00000579665	ENST00000361584		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	NUFIP2	chr17	27620801	-	ZFP69B	chr1	40916328	+
5CDS-5UTR	ENST00000579665	ENST00000411995		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	NUFIP2	chr17	27620801	-	ZFP69B	chr1	40916328	+
5UTR-3CDS	ENST00000298289	ENST00000013125		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	RPL36AL	chr14	50087280	-	MAP4K5	chr14	50923312	-
5UTR-intron	ENST00000298289	ENST00000557578		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	RPL36AL	chr14	50087280	-	MAP4K5	chr14	50923312	-
In-frame	ENST00000397707	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000397707	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000397707	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000397707	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000560611	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000560611	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000560611	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000560611	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000354181	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000354181	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000354181	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000354181	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000458406	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000458406	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000458406	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000458406	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000397702	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000397702	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000397702	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000397702	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000290209	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000290209	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000290209	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000290209	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000558667	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000558667	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000558667	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
Frame-shit	ENST00000558667	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000558589	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000558589	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000558589	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000558589	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000451844	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000451844	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000451844	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000451844	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000560164	ENST00000311528		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000560164	ENST00000567815		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000560164	ENST00000452368		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
intron-3CDS	ENST00000560164	ENST00000393099		TCGA	LD	BLCA	TCGA-DK-A2I2-01A	SLC12A6	chr15	34628611	-	RPL13	chr16	89627986	+
In-frame	ENST00000355854	ENST00000220763		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
5CDS-intron	ENST00000355854	ENST00000529551		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
In-frame	ENST00000347776	ENST00000220763		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
5CDS-intron	ENST00000347776	ENST00000529551		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
In-frame	ENST00000409308	ENST00000220763		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
5CDS-intron	ENST00000409308	ENST00000529551		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
In-frame	ENST00000410043	ENST00000220763		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
5CDS-intron	ENST00000410043	ENST00000529551		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
Frame-shit	ENST00000409130	ENST00000220763		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
5CDS-intron	ENST00000409130	ENST00000529551		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
intron-3CDS	ENST00000476943	ENST00000220763		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
intron-intron	ENST00000476943	ENST00000529551		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CAB39L	chr13	49924880	-	CPQ	chr8	97847201	+
5CDS-intron	ENST00000421999	ENST00000182096		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
5CDS-intron	ENST00000421999	ENST00000485253		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
5CDS-intron	ENST00000421999	ENST00000419587		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
5CDS-intron	ENST00000421999	ENST00000389622		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
3UTR-intron	ENST00000496116	ENST00000182096		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
3UTR-intron	ENST00000496116	ENST00000485253		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
3UTR-intron	ENST00000496116	ENST00000419587		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
3UTR-intron	ENST00000496116	ENST00000389622		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
intron-intron	ENST00000489081	ENST00000182096		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
intron-intron	ENST00000489081	ENST00000485253		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
intron-intron	ENST00000489081	ENST00000419587		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
intron-intron	ENST00000489081	ENST00000389622		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	CMSS1	chr3	99536887	+	CRYBG3	chr3	97562039	+
In-frame	ENST00000584601	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000584601	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000584601	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000584601	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000584601	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000406381	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000406381	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000406381	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000406381	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000406381	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000541774	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000541774	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000541774	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000541774	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000541774	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000445658	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000445658	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000445658	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000445658	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000445658	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000540147	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000540147	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000540147	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000540147	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000540147	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000584450	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000584450	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000584450	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000584450	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000584450	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000269571	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000269571	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000269571	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000269571	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000269571	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000578199	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000578199	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000578199	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000578199	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000578199	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000540042	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000540042	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000540042	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000540042	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000540042	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000584888	ENST00000276692		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000584888	ENST00000519548		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000584888	ENST00000517678		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
intron-5UTR	ENST00000584888	ENST00000521546		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
intron-intron	ENST00000584888	ENST00000605953		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ERBB2	chr17	37868701	+	TATDN1	chr8	125507783	-
In-frame	ENST00000396373	ENST00000381847		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ETV6	chr12	11905513	+	PRH2	chr12	11082868	+
In-frame	ENST00000396373	ENST00000396400		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ETV6	chr12	11905513	+	PRH2	chr12	11082868	+
3UTR-3CDS	ENST00000544715	ENST00000381847		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ETV6	chr12	11905513	+	PRH2	chr12	11082868	+
3UTR-3CDS	ENST00000544715	ENST00000396400		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	ETV6	chr12	11905513	+	PRH2	chr12	11082868	+
5CDS-5UTR	ENST00000378017	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000378017	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000378017	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000378017	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000518547	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000518547	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000518547	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-intron	ENST00000354184	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-5UTR	ENST00000354184	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5UTR-intron	ENST00000354184	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000395508	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000395508	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000395508	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000325064	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000325064	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000325064	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000431961	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000431961	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000431961	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000523587	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000523587	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000523587	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000584601		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000406381		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000541774		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000524090	ENST00000445658		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000540147		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000584450		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000269571		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000578199		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-5UTR	ENST00000524090	ENST00000540042		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
intron-intron	ENST00000524090	ENST00000584888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	MTSS1	chr8	125740125	-	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000327155	ENST00000413465		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000327155	ENST00000359597		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000327155	ENST00000269305		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000327155	ENST00000455263		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000327155	ENST00000420246		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000327155	ENST00000445888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000327155	ENST00000574684		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000399722	ENST00000413465		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000399722	ENST00000359597		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000399722	ENST00000269305		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000399722	ENST00000455263		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000399722	ENST00000420246		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000399722	ENST00000445888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000399722	ENST00000574684		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-intron	ENST00000399725	ENST00000413465		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-intron	ENST00000399725	ENST00000359597		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000399725	ENST00000269305		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000399725	ENST00000455263		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000399725	ENST00000420246		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000399725	ENST00000445888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
intron-intron	ENST00000399725	ENST00000574684		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000360790	ENST00000413465		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000360790	ENST00000359597		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000360790	ENST00000269305		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000360790	ENST00000455263		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000360790	ENST00000420246		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000360790	ENST00000445888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000360790	ENST00000574684		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000581687	ENST00000413465		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000581687	ENST00000359597		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000581687	ENST00000269305		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000581687	ENST00000455263		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000581687	ENST00000420246		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000581687	ENST00000445888		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000581687	ENST00000574684		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	RBBP8	chr18	20596887	+	TP53	chr17	7579940	-
5CDS-intron	ENST00000395996	ENST00000538056		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000395996	ENST00000251108		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000395996	ENST00000496952		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000395996	ENST00000444959		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000358544	ENST00000538056		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000358544	ENST00000251108		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000358544	ENST00000496952		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000358544	ENST00000444959		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000357162	ENST00000538056		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000357162	ENST00000251108		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000357162	ENST00000496952		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-intron	ENST00000357162	ENST00000444959		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000355155	ENST00000538056		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000355155	ENST00000251108		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000355155	ENST00000496952		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000355155	ENST00000444959		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000441350	ENST00000538056		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000441350	ENST00000251108		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000441350	ENST00000496952		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000441350	ENST00000444959		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000521932	ENST00000538056		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000521932	ENST00000251108		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000521932	ENST00000496952		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
intron-intron	ENST00000521932	ENST00000444959		TCGA	LD	BLCA	TCGA-DK-A2I6-01A	VPS13B	chr8	100403932	+	CDADC1	chr13	49865820	+
5CDS-5UTR	ENST00000318911	ENST00000530047		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-5UTR	ENST00000318911	ENST00000527078		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-5UTR	ENST00000318911	ENST00000402965		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-5UTR	ENST00000318911	ENST00000532887		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-5UTR	ENST00000318911	ENST00000329994		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-3UTR	ENST00000318911	ENST00000526891		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-5UTR	ENST00000318911	ENST00000540505		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
5CDS-5UTR	ENST00000318911	ENST00000526752		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	CYC1	chr8	145151647	+	SLC52A2	chr8	145582844	+
Frame-shit	ENST00000557325	ENST00000281081		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
Frame-shit	ENST00000557325	ENST00000536705		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
5CDS-3UTR	ENST00000557325	ENST00000418681		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
Frame-shit	ENST00000334696	ENST00000281081		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
Frame-shit	ENST00000334696	ENST00000536705		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
5CDS-3UTR	ENST00000334696	ENST00000418681		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000556242	ENST00000281081		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000556242	ENST00000536705		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
intron-3UTR	ENST00000556242	ENST00000418681		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000554664	ENST00000281081		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000554664	ENST00000536705		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
intron-3UTR	ENST00000554664	ENST00000418681		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	ENTPD5	chr14	74436713	-	NUBPL	chr14	32295835	+
In-frame	ENST00000335681	ENST00000289382		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	NPAS2	chr2	101565942	+	CNOT11	chr2	101879001	+
In-frame	ENST00000542504	ENST00000289382		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	NPAS2	chr2	101565942	+	CNOT11	chr2	101879001	+
3UTR-3CDS	ENST00000486017	ENST00000289382		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	NPAS2	chr2	101565942	+	CNOT11	chr2	101879001	+
5UTR-3CDS	ENST00000250559	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000250559	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000250559	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000250559	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000393436	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000393436	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000393436	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000393436	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000341355	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000341355	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000341355	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000341355	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000537460	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000537460	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000537460	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000537460	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
intron-3CDS	ENST00000463493	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
intron-3CDS	ENST00000463493	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
intron-3CDS	ENST00000463493	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
intron-intron	ENST00000463493	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000450214	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000450214	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000450214	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000450214	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000543393	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000543393	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000543393	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000543393	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000378985	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000378985	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000378985	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000378985	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000540209	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000540209	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000540209	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000540209	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000539091	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000539091	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000539091	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000539091	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000542145	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000542145	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000542145	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000542145	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000543697	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000543697	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000543697	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000543697	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000541216	ENST00000229179		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000541216	ENST00000378905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-3CDS	ENST00000541216	ENST00000539906		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
5UTR-intron	ENST00000541216	ENST00000401003		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	RAP1B	chr12	69004823	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000581396	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000581396	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000581396	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000581396	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000581396	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000581396	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
Frame-shit	ENST00000379504	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000379504	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000379504	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000379504	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000379504	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000379504	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
Frame-shit	ENST00000318094	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000318094	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000318094	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000318094	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000318094	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000318094	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
Frame-shit	ENST00000395739	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395739	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395739	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395739	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395739	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000395739	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
Frame-shit	ENST00000535933	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000535933	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000535933	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000535933	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000535933	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000535933	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
Frame-shit	ENST00000540946	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000540946	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000540946	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000540946	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000540946	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000540946	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
Frame-shit	ENST00000542206	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000542206	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000542206	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000542206	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000542206	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000542206	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-3CDS	ENST00000478943	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000478943	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000478943	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000478943	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000478943	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-5UTR	ENST00000478943	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-3CDS	ENST00000577517	ENST00000338854		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000577517	ENST00000395757		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000577517	ENST00000355815		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000577517	ENST00000261646		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-intron	ENST00000577517	ENST00000435530		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
intron-5UTR	ENST00000577517	ENST00000583732		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	TOM1L2	chr17	17875576	-	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000379310	ENST00000432905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	VWA8	chr13	42439872	-	TPTE2P5	chr13	41400730	-
5CDS-5UTR	ENST00000281496	ENST00000432905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	VWA8	chr13	42439872	-	TPTE2P5	chr13	41400730	-
intron-5UTR	ENST00000478987	ENST00000432905		TCGA	LD	BLCA	TCGA-DK-A3IK-01A	VWA8	chr13	42439872	-	TPTE2P5	chr13	41400730	-
Frame-shit	ENST00000374864	ENST00000371437		TCGA	LD	BLCA	TCGA-DK-A3IM-01A	ITCH	chr20	33037285	+	NDUFA1	chrX	119007267	+
Frame-shit	ENST00000535650	ENST00000371437		TCGA	LD	BLCA	TCGA-DK-A3IM-01A	ITCH	chr20	33037285	+	NDUFA1	chrX	119007267	+
Frame-shit	ENST00000262650	ENST00000371437		TCGA	LD	BLCA	TCGA-DK-A3IM-01A	ITCH	chr20	33037285	+	NDUFA1	chrX	119007267	+
3UTR-3CDS	ENST00000483727	ENST00000371437		TCGA	LD	BLCA	TCGA-DK-A3IM-01A	ITCH	chr20	33037285	+	NDUFA1	chrX	119007267	+
Frame-shit	ENST00000227756	ENST00000588705		TCGA	LD	BLCA	TCGA-DK-A3IN-01A	GALNT18	chr11	11454168	-	IER3IP1	chr18	44683908	-
In-frame	ENST00000227756	ENST00000256433		TCGA	LD	BLCA	TCGA-DK-A3IN-01A	GALNT18	chr11	11454168	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000526064	ENST00000588705		TCGA	LD	BLCA	TCGA-DK-A3IN-01A	GALNT18	chr11	11454168	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000526064	ENST00000256433		TCGA	LD	BLCA	TCGA-DK-A3IN-01A	GALNT18	chr11	11454168	-	IER3IP1	chr18	44683908	-
5CDS-5UTR	ENST00000357847	ENST00000461783		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000449545		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000367174		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000456144		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000318981		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000360366		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000529824		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000456877		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000528391		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000357847	ENST00000275246		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-5UTR	ENST00000344492	ENST00000461783		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000449545		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000367174		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000456144		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000318981		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000360366		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000529824		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000456877		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000528391		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000344492	ENST00000275246		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-5UTR	ENST00000275235	ENST00000461783		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000449545		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000367174		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000456144		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000318981		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000360366		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000529824		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000456877		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000528391		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275235	ENST00000275246		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-5UTR	ENST00000367598	ENST00000461783		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000449545		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000367174		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000456144		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000318981		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000360366		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000529824		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000456877		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000528391		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367598	ENST00000275246		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-5UTR	ENST00000494282	ENST00000461783		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000449545		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000367174		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000456144		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000318981		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000360366		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000529824		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000456877		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000528391		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000494282	ENST00000275246		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-5UTR	ENST00000367596	ENST00000461783		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000449545		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000367174		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000456144		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000318981		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000360366		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000529824		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000456877		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000528391		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000367596	ENST00000275246		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	AIG1	chr6	143605362	+	TIAM2	chr6	155265250	+
5CDS-5UTR	ENST00000508628	ENST00000392411		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000508628	ENST00000321280		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000508628	ENST00000428708		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000508628	ENST00000575712		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000508628	ENST00000575245		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000508628	ENST00000435091		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000508628	ENST00000321300		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-3UTR	ENST00000508628	ENST00000573894		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-intron	ENST00000508628	ENST00000416299		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000392411		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000321280		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000428708		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000575712		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000575245		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000435091		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000456466	ENST00000321300		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-3UTR	ENST00000456466	ENST00000573894		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-intron	ENST00000456466	ENST00000416299		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000392411		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000321280		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000428708		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000575712		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000575245		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000435091		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000582970	ENST00000321300		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-3UTR	ENST00000582970	ENST00000573894		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-intron	ENST00000582970	ENST00000416299		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000392411		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000321280		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000428708		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000575712		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000575245		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000435091		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000319921	ENST00000321300		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-3UTR	ENST00000319921	ENST00000573894		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
5CDS-intron	ENST00000319921	ENST00000416299		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000392411		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000321280		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000428708		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000575712		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000575245		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000435091		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000336301	ENST00000321300		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-3UTR	ENST00000336301	ENST00000573894		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-intron	ENST00000336301	ENST00000416299		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000392411		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000321280		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000428708		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000575712		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000575245		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000435091		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000427003	ENST00000321300		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-3UTR	ENST00000427003	ENST00000573894		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-intron	ENST00000427003	ENST00000416299		TCGA	LD	BLCA	TCGA-DK-A3IQ-01A	RNF213	chr17	78272318	+	BAIAP2	chr17	79058632	+
intron-3CDS	ENST00000356406	ENST00000286448		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000356406	ENST00000479687		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000356406	ENST00000262640		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000356406	ENST00000460621		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3CDS	ENST00000413009	ENST00000286448		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000413009	ENST00000479687		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000413009	ENST00000262640		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000413009	ENST00000460621		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
5UTR-3CDS	ENST00000503233	ENST00000286448		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
5UTR-3UTR	ENST00000503233	ENST00000479687		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
5UTR-3UTR	ENST00000503233	ENST00000262640		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
5UTR-3UTR	ENST00000503233	ENST00000460621		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3CDS	ENST00000515797	ENST00000286448		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000515797	ENST00000479687		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000515797	ENST00000262640		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3UTR	ENST00000515797	ENST00000460621		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ACOX3	chr4	8430078	-	VAMP7	chrY	59272371	+
intron-3CDS	ENST00000509216	ENST00000382865		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	GPR78	chr4	8560708	+	POLN	chr4	2133017	-
intron-3CDS	ENST00000509216	ENST00000511885		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	GPR78	chr4	8560708	+	POLN	chr4	2133017	-
intron-intron	ENST00000509216	ENST00000515357		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	GPR78	chr4	8560708	+	POLN	chr4	2133017	-
intron-3CDS	ENST00000382487	ENST00000382865		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	GPR78	chr4	8560708	+	POLN	chr4	2133017	-
intron-3CDS	ENST00000382487	ENST00000511885		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	GPR78	chr4	8560708	+	POLN	chr4	2133017	-
intron-intron	ENST00000382487	ENST00000515357		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	GPR78	chr4	8560708	+	POLN	chr4	2133017	-
In-frame	ENST00000265462	ENST00000266674		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
Frame-shit	ENST00000265462	ENST00000536515		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
Frame-shit	ENST00000265462	ENST00000540815		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
In-frame	ENST00000352435	ENST00000266674		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
Frame-shit	ENST00000352435	ENST00000536515		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
Frame-shit	ENST00000352435	ENST00000540815		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
In-frame	ENST00000347941	ENST00000266674		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
Frame-shit	ENST00000347941	ENST00000536515		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
Frame-shit	ENST00000347941	ENST00000540815		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	PRDX5	chr11	64088540	+	LGR5	chr12	71977427	+
In-frame	ENST00000448507	ENST00000307358		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
In-frame	ENST00000448507	ENST00000382512		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
In-frame	ENST00000409757	ENST00000307358		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
In-frame	ENST00000409757	ENST00000382512		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000410031	ENST00000307358		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000410031	ENST00000382512		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000451522	ENST00000307358		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000451522	ENST00000382512		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000446947	ENST00000307358		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000446947	ENST00000382512		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	TBC1D14	chr4	6925838	+	HTRA3	chr4	8288288	+
In-frame	ENST00000290974	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
In-frame	ENST00000511071	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
intron-3CDS	ENST00000515312	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
intron-3CDS	ENST00000515169	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
In-frame	ENST00000509171	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
In-frame	ENST00000503000	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
intron-3CDS	ENST00000508471	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
intron-3CDS	ENST00000505421	ENST00000313288		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZFYVE28	chr4	2420012	-	TACC3	chr4	1741429	+
Frame-shit	ENST00000487874	ENST00000356406		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000487874	ENST00000413009		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000487874	ENST00000503233		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-5UTR	ENST00000487874	ENST00000515797		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
Frame-shit	ENST00000373340	ENST00000356406		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000373340	ENST00000413009		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000373340	ENST00000503233		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-5UTR	ENST00000373340	ENST00000515797		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5UTR-3CDS	ENST00000493328	ENST00000356406		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5UTR-intron	ENST00000493328	ENST00000413009		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5UTR-intron	ENST00000493328	ENST00000503233		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5UTR-5UTR	ENST00000493328	ENST00000515797		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
Frame-shit	ENST00000357182	ENST00000356406		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000357182	ENST00000413009		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000357182	ENST00000503233		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-5UTR	ENST00000357182	ENST00000515797		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
Frame-shit	ENST00000317538	ENST00000356406		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000317538	ENST00000413009		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000317538	ENST00000503233		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-5UTR	ENST00000317538	ENST00000515797		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
Frame-shit	ENST00000373333	ENST00000356406		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000373333	ENST00000413009		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-intron	ENST00000373333	ENST00000503233		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5CDS-5UTR	ENST00000373333	ENST00000515797		TCGA	LD	BLCA	TCGA-DK-A3IS-01A	ZMYM6	chr1	35496148	-	ACOX3	chr4	8375355	-
5UTR-3CDS	ENST00000367021	ENST00000361548		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000367021	ENST00000342072		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000367021	ENST00000350501		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-3UTR	ENST00000367021	ENST00000530984		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000367021	ENST00000356046		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000367021	ENST00000236255		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-3CDS	ENST00000542854	ENST00000361548		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000542854	ENST00000342072		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000542854	ENST00000350501		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-3UTR	ENST00000542854	ENST00000530984		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000542854	ENST00000356046		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
5UTR-5UTR	ENST00000542854	ENST00000236255		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	IRF6	chr1	209979292	-	GRHL3	chr1	24657916	+
Frame-shit	ENST00000278823	ENST00000301785		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	MTA2	chr11	62368094	-	HNRNPUL2	chr11	62491898	-
intron-3CDS	ENST00000524902	ENST00000301785		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	MTA2	chr11	62368094	-	HNRNPUL2	chr11	62491898	-
5UTR-3CDS	ENST00000527204	ENST00000301785		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	MTA2	chr11	62368094	-	HNRNPUL2	chr11	62491898	-
5CDS-intron	ENST00000397707	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397707	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000397707	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397707	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397707	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000560611	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000560611	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000560611	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000560611	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000560611	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000354181	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000354181	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000354181	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000354181	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000354181	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000458406	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000458406	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000458406	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000458406	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000458406	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397702	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397702	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000397702	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397702	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000397702	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000290209	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000290209	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-5UTR	ENST00000290209	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000290209	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000290209	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558667	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558667	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000558667	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558667	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558667	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558589	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558589	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-5UTR	ENST00000558589	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558589	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
5CDS-intron	ENST00000558589	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000451844	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000451844	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-5UTR	ENST00000451844	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000451844	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000451844	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000560164	ENST00000543376		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000560164	ENST00000432566		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-5UTR	ENST00000560164	ENST00000360553		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000560164	ENST00000359187		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
intron-intron	ENST00000560164	ENST00000565885		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	SLC12A6	chr15	34628611	-	GOLGA8A	chr15	34683627	-
Frame-shit	ENST00000306357	ENST00000425538		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
Frame-shit	ENST00000306357	ENST00000343344		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
5CDS-intron	ENST00000306357	ENST00000395988		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
intron-3CDS	ENST00000574431	ENST00000425538		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
intron-3CDS	ENST00000574431	ENST00000343344		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
intron-intron	ENST00000574431	ENST00000395988		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
5UTR-3CDS	ENST00000573373	ENST00000425538		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
5UTR-3CDS	ENST00000573373	ENST00000343344		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
5UTR-intron	ENST00000573373	ENST00000395988		TCGA	LD	BLCA	TCGA-DK-A3IT-01A	STX8	chr17	9471688	-	MYOCD	chr17	12608445	+
5CDS-5UTR	ENST00000451813	ENST00000568305		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000451813	ENST00000374954		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000252015	ENST00000568305		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000252015	ENST00000374954		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000539834	ENST00000568305		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000539834	ENST00000374954		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000432634	ENST00000568305		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000432634	ENST00000374954		TCGA	LD	BLCA	TCGA-DK-A3IV-01A	TRPC4AP	chr20	33622926	-	ASIP	chr20	32848171	+
5CDS-intron	ENST00000220853	ENST00000259075		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-intron	ENST00000220853	ENST00000457476		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-intron	ENST00000220853	ENST00000392749		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-3UTR	ENST00000220853	ENST00000461338		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-intron	ENST00000220853	ENST00000402568		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-intron	ENST00000220853	ENST00000406287		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-intron	ENST00000220853	ENST00000405852		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
5CDS-intron	ENST00000220853	ENST00000403609		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000259075		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000457476		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000392749		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-3UTR	ENST00000520294	ENST00000461338		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000402568		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000406287		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000405852		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
3UTR-intron	ENST00000520294	ENST00000403609		TCGA	LD	BLCA	TCGA-DK-A3WW-01A	EMC2	chr8	109482350	+	TANK	chr2	162019625	+
intron-5UTR	ENST00000272203	ENST00000367194		TCGA	LD	BLCA	TCGA-DK-A3WX-01A	PLEKHA6	chr1	204336927	-	KISS1	chr1	204162042	-
intron-5UTR	ENST00000414478	ENST00000367194		TCGA	LD	BLCA	TCGA-DK-A3WX-01A	PLEKHA6	chr1	204336927	-	KISS1	chr1	204162042	-
intron-5UTR	ENST00000485632	ENST00000367194		TCGA	LD	BLCA	TCGA-DK-A3WX-01A	PLEKHA6	chr1	204336927	-	KISS1	chr1	204162042	-
5CDS-5UTR	ENST00000371429	ENST00000312233		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	NDC1	chr1	54284644	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000540001	ENST00000312233		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	NDC1	chr1	54284644	-	GLIS1	chr1	54065951	-
5UTR-5UTR	ENST00000537333	ENST00000312233		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	NDC1	chr1	54284644	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000234725	ENST00000312233		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	NDC1	chr1	54284644	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000480952	ENST00000312233		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	NDC1	chr1	54284644	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000276893	ENST00000417746		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000276893	ENST00000456383		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000276893	ENST00000381434		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-intron	ENST00000276893	ENST00000463336		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000381373	ENST00000417746		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000381373	ENST00000456383		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000381373	ENST00000381434		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
5CDS-intron	ENST00000381373	ENST00000463336		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
intron-5UTR	ENST00000485617	ENST00000417746		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
intron-5UTR	ENST00000485617	ENST00000456383		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
intron-5UTR	ENST00000485617	ENST00000381434		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
intron-intron	ENST00000485617	ENST00000463336		TCGA	LD	BLCA	TCGA-DK-A3X2-01A	UHRF2	chr9	6413643	+	IL33	chr9	6241684	+
In-frame	ENST00000261778	ENST00000334134		TCGA	LD	BLCA	TCGA-DK-A6AV-01A	TANGO6	chr16	68964198	+	FGF3	chr11	69631191	-
intron-3CDS	ENST00000561931	ENST00000334134		TCGA	LD	BLCA	TCGA-DK-A6AV-01A	TANGO6	chr16	68964198	+	FGF3	chr11	69631191	-
Frame-shit	ENST00000534328	ENST00000397397		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000397411		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000397396		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000397408		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000397406		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000409543		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000525201		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000397404		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000346501		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000534328	ENST00000409531		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000397397		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000397411		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000397396		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000397408		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000397406		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000409543		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000525201		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000397404		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000346501		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000332231	ENST00000409531		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000397397		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000397411		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000397396		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000397408		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000397406		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000409543		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000525201		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000397404		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000346501		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
Frame-shit	ENST00000448903	ENST00000409531		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000397397		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000397411		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000397396		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000397408		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000397406		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000409543		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000525201		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000397404		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000346501		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
intron-3CDS	ENST00000525891	ENST00000409531		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	AP2A2	chr11	926088	+	TSPAN4	chr11	864437	+
5CDS-5UTR	ENST00000455140	ENST00000573319		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	EPS15L1	chr19	16582724	-	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000248070	ENST00000573319		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	EPS15L1	chr19	16582724	-	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000535753	ENST00000573319		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	EPS15L1	chr19	16582724	-	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000594975	ENST00000573319		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	EPS15L1	chr19	16582724	-	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000602009	ENST00000573319		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	EPS15L1	chr19	16582724	-	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000597937	ENST00000573319		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	EPS15L1	chr19	16582724	-	BCAR4	chr16	11914154	-
5CDS-intron	ENST00000283228	ENST00000348959		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000283228	ENST00000261173		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000283228	ENST00000359142		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-5UTR	ENST00000283228	ENST00000428670		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000283228	ENST00000393164		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000440835	ENST00000348959		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000440835	ENST00000261173		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000440835	ENST00000359142		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-5UTR	ENST00000440835	ENST00000428670		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000440835	ENST00000393164		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
intron-intron	ENST00000537619	ENST00000348959		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
intron-intron	ENST00000537619	ENST00000261173		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
intron-intron	ENST00000537619	ENST00000359142		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
intron-5UTR	ENST00000537619	ENST00000428670		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
intron-intron	ENST00000537619	ENST00000393164		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000378778	ENST00000348959		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000378778	ENST00000261173		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000378778	ENST00000359142		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-5UTR	ENST00000378778	ENST00000428670		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000378778	ENST00000393164		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000342084	ENST00000348959		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000342084	ENST00000261173		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000342084	ENST00000359142		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-5UTR	ENST00000342084	ENST00000428670		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000342084	ENST00000393164		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000549308	ENST00000348959		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000549308	ENST00000261173		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000549308	ENST00000359142		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-5UTR	ENST00000549308	ENST00000428670		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-intron	ENST00000549308	ENST00000393164		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	PTPRR	chr12	71139598	-	ATP2B1	chr12	90049884	-
5CDS-5UTR	ENST00000332707	ENST00000261172		TCGA	LD	BLCA	TCGA-DK-A6B2-01A	XPOT	chr12	64833095	+	EPYC	chr12	91396355	-
In-frame	ENST00000533820	ENST00000358252		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000533820	ENST00000532437		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
5CDS-intron	ENST00000533820	ENST00000530920		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000533129	ENST00000358252		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000533129	ENST00000532437		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
5CDS-intron	ENST00000533129	ENST00000530920		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000524773	ENST00000358252		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000524773	ENST00000532437		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
5CDS-intron	ENST00000524773	ENST00000530920		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000279247	ENST00000358252		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000279247	ENST00000532437		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
5CDS-intron	ENST00000279247	ENST00000530920		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
3UTR-3CDS	ENST00000527469	ENST00000358252		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
3UTR-3CDS	ENST00000527469	ENST00000532437		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
3UTR-intron	ENST00000527469	ENST00000530920		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000527323	ENST00000358252		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
In-frame	ENST00000527323	ENST00000532437		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
5CDS-intron	ENST00000527323	ENST00000530920		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	CAPN1	chr11	64951063	+	TNKS1BP1	chr11	57068515	-
5CDS-intron	ENST00000346348	ENST00000193322		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000346348	ENST00000492130		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000314673	ENST00000193322		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000314673	ENST00000492130		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000513865	ENST00000193322		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000513865	ENST00000492130		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
intron-intron	ENST00000505648	ENST00000193322		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
intron-intron	ENST00000505648	ENST00000492130		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
intron-intron	ENST00000508980	ENST00000193322		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
intron-intron	ENST00000508980	ENST00000492130		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000369627	ENST00000193322		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
5CDS-intron	ENST00000369627	ENST00000492130		TCGA	LD	BLCA	TCGA-DK-A6B5-01A	SNX14	chr6	86303297	-	OSTM1	chr6	108443918	-
Frame-shit	ENST00000394048	ENST00000303305		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
Frame-shit	ENST00000394048	ENST00000552766		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
Frame-shit	ENST00000267113	ENST00000303305		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
Frame-shit	ENST00000267113	ENST00000552766		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
Frame-shit	ENST00000541590	ENST00000303305		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
Frame-shit	ENST00000541590	ENST00000552766		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
intron-3CDS	ENST00000550878	ENST00000303305		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
intron-3CDS	ENST00000550878	ENST00000552766		TCGA	LD	BLCA	TCGA-DK-A6B6-01A	ESYT1	chr12	56522493	+	PA2G4	chr12	56500372	+
5CDS-intron	ENST00000243903	ENST00000596019		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000397162		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000397165		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000358523		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000595736		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000597972		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000593468		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
5CDS-intron	ENST00000243903	ENST00000599240		TCGA	LD	BLCA	TCGA-DK-AA6L-01A	ACTR5	chr20	37384682	+	ZNF682	chr19	20126651	-
Frame-shit	ENST00000543942	ENST00000261234		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
5CDS-intron	ENST00000543942	ENST00000537982		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
5CDS-5UTR	ENST00000543942	ENST00000537373		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
Frame-shit	ENST00000333722	ENST00000261234		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
5CDS-intron	ENST00000333722	ENST00000537982		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
5CDS-5UTR	ENST00000333722	ENST00000537373		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
intron-3CDS	ENST00000536975	ENST00000261234		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
intron-intron	ENST00000536975	ENST00000537982		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
intron-5UTR	ENST00000536975	ENST00000537373		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	C12orf56	chr12	64784094	-	TMEM5	chr12	64199014	+
Frame-shit	ENST00000412331	ENST00000406386		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
Frame-shit	ENST00000412331	ENST00000407319		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
Frame-shit	ENST00000412331	ENST00000403663		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
Frame-shit	ENST00000381683	ENST00000406386		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
Frame-shit	ENST00000381683	ENST00000407319		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
Frame-shit	ENST00000381683	ENST00000403663		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000406934	ENST00000406386		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000406934	ENST00000407319		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000406934	ENST00000403663		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000476955	ENST00000406386		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000476955	ENST00000407319		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000476955	ENST00000403663		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	EIF3L	chr22	38251651	+	TRIOBP	chr22	38150884	+
intron-3CDS	ENST00000307980	ENST00000530124		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000307980	ENST00000257247		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-5UTR	ENST00000307980	ENST00000525875		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-intron	ENST00000307980	ENST00000378024		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000535644	ENST00000530124		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000535644	ENST00000257247		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-5UTR	ENST00000535644	ENST00000525875		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
intron-intron	ENST00000535644	ENST00000378024		TCGA	LD	BLCA	TCGA-DK-AA6P-01A	RAD9A	chr11	67088804	+	AHNAK	chr11	62201363	-
Frame-shit	ENST00000293217	ENST00000390665		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ACOX1	chr17	73956296	-	PPP2R3B	chrY	272325	-
In-frame	ENST00000537812	ENST00000390665		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ACOX1	chr17	73956296	-	PPP2R3B	chrY	272325	-
intron-3CDS	ENST00000301608	ENST00000390665		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ACOX1	chr17	73956296	-	PPP2R3B	chrY	272325	-
5UTR-3CDS	ENST00000591857	ENST00000390665		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ACOX1	chr17	73956296	-	PPP2R3B	chrY	272325	-
Frame-shit	ENST00000373231	ENST00000449981		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	KCNK17	chr6	39271733	-	DNAH8	chr6	38889145	+
Frame-shit	ENST00000373231	ENST00000359357		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	KCNK17	chr6	39271733	-	DNAH8	chr6	38889145	+
Frame-shit	ENST00000373231	ENST00000441566		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	KCNK17	chr6	39271733	-	DNAH8	chr6	38889145	+
In-frame	ENST00000453413	ENST00000449981		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	KCNK17	chr6	39271733	-	DNAH8	chr6	38889145	+
In-frame	ENST00000453413	ENST00000359357		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	KCNK17	chr6	39271733	-	DNAH8	chr6	38889145	+
In-frame	ENST00000453413	ENST00000441566		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	KCNK17	chr6	39271733	-	DNAH8	chr6	38889145	+
In-frame	ENST00000360605	ENST00000360388		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	URI1	chr19	30477324	+	SLC35F1	chr6	118596622	+
In-frame	ENST00000542441	ENST00000360388		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	URI1	chr19	30477324	+	SLC35F1	chr6	118596622	+
In-frame	ENST00000392271	ENST00000360388		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	URI1	chr19	30477324	+	SLC35F1	chr6	118596622	+
In-frame	ENST00000312051	ENST00000360388		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	URI1	chr19	30477324	+	SLC35F1	chr6	118596622	+
intron-3CDS	ENST00000574176	ENST00000360388		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	URI1	chr19	30477324	+	SLC35F1	chr6	118596622	+
5CDS-5UTR	ENST00000287218	ENST00000262643		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
5CDS-5UTR	ENST00000287218	ENST00000357943		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
5CDS-intron	ENST00000287218	ENST00000444983		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
5CDS-5UTR	ENST00000373391	ENST00000262643		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
5CDS-5UTR	ENST00000373391	ENST00000357943		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
5CDS-intron	ENST00000373391	ENST00000444983		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
intron-5UTR	ENST00000463847	ENST00000262643		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
intron-5UTR	ENST00000463847	ENST00000357943		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
intron-intron	ENST00000463847	ENST00000444983		TCGA	LD	BLCA	TCGA-DK-AA6U-01A	ZFAND3	chr6	37787792	+	CCNE1	chr19	30303439	+
5CDS-5UTR	ENST00000288985	ENST00000381196		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000360074		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000537002		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000397617		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000358503		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000397611		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000355233		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000356435		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000540109		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000486161		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000397606		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-5UTR	ENST00000288985	ENST00000463477		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000288985	ENST00000471274		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-5UTR	ENST00000466840	ENST00000381196		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000360074		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000537002		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000397617		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000358503		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000397611		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000355233		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000356435		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000540109		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000486161		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000397606		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-5UTR	ENST00000466840	ENST00000463477		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
3UTR-intron	ENST00000466840	ENST00000471274		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-5UTR	ENST00000437817	ENST00000381196		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000360074		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000537002		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000397617		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000358503		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000397611		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000355233		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000356435		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000540109		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000486161		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000397606		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-5UTR	ENST00000437817	ENST00000463477		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000437817	ENST00000471274		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-5UTR	ENST00000407474	ENST00000381196		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000360074		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000537002		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000397617		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000358503		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000397611		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000355233		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000356435		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000540109		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000486161		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000397606		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-5UTR	ENST00000407474	ENST00000463477		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
intron-intron	ENST00000407474	ENST00000471274		TCGA	LD	BLCA	TCGA-DK-AA6W-01A	ERCC6L2	chr9	98691146	+	PTPRD	chr9	9018735	-
5CDS-intron	ENST00000299300	ENST00000546373		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000299300	ENST00000551568		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000299300	ENST00000338356		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000299300	ENST00000549691		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000544368	ENST00000546373		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000544368	ENST00000551568		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000544368	ENST00000338356		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000544368	ENST00000549691		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5UTR-intron	ENST00000543146	ENST00000546373		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5UTR-intron	ENST00000543146	ENST00000551568		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5UTR-intron	ENST00000543146	ENST00000338356		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5UTR-intron	ENST00000543146	ENST00000549691		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CCT2	chr12	69980124	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000274695	ENST00000355192		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000274695	ENST00000308259		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000274695	ENST00000540804		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000274695	ENST00000535664		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000274695	ENST00000538725		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000378624	ENST00000355192		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000378624	ENST00000308259		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000378624	ENST00000540804		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000378624	ENST00000535664		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000378624	ENST00000538725		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378610	ENST00000355192		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378610	ENST00000308259		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378610	ENST00000540804		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378610	ENST00000535664		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378610	ENST00000538725		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000476517	ENST00000355192		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000476517	ENST00000308259		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000476517	ENST00000540804		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000476517	ENST00000535664		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000476517	ENST00000538725		TCGA	LD	BLCA	TCGA-DK-AA75-01A	CDKAL1	chr6	21108694	+	MSRB3	chr12	65881784	+
Frame-shit	ENST00000448083	ENST00000476258		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000448083	ENST00000405458		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000448083	ENST00000409753		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000448083	ENST00000482348		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000448083	ENST00000356033		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000448083	ENST00000470924		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000448083	ENST00000481647		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000448083	ENST00000392566		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000448083	ENST00000581874		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000448083	ENST00000465454		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000312562	ENST00000476258		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000312562	ENST00000405458		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000312562	ENST00000409753		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000312562	ENST00000482348		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000312562	ENST00000356033		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000312562	ENST00000470924		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000312562	ENST00000481647		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000312562	ENST00000392566		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000312562	ENST00000581874		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000312562	ENST00000465454		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000531493	ENST00000476258		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000531493	ENST00000405458		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000531493	ENST00000409753		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000531493	ENST00000482348		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000531493	ENST00000356033		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000531493	ENST00000470924		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000531493	ENST00000481647		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000531493	ENST00000392566		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000531493	ENST00000581874		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000531493	ENST00000465454		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000532401	ENST00000476258		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000532401	ENST00000405458		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000532401	ENST00000409753		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000532401	ENST00000482348		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000532401	ENST00000356033		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000532401	ENST00000470924		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
Frame-shit	ENST00000532401	ENST00000481647		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
In-frame	ENST00000532401	ENST00000392566		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000532401	ENST00000581874		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000532401	ENST00000465454		TCGA	LD	BLCA	TCGA-DK-AA75-01A	FOSL1	chr11	65667712	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000258111	ENST00000355192		TCGA	LD	BLCA	TCGA-DK-AA75-01A	KCNMB4	chr12	70760850	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000258111	ENST00000308259		TCGA	LD	BLCA	TCGA-DK-AA75-01A	KCNMB4	chr12	70760850	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000258111	ENST00000540804		TCGA	LD	BLCA	TCGA-DK-AA75-01A	KCNMB4	chr12	70760850	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000258111	ENST00000535664		TCGA	LD	BLCA	TCGA-DK-AA75-01A	KCNMB4	chr12	70760850	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000258111	ENST00000538725		TCGA	LD	BLCA	TCGA-DK-AA75-01A	KCNMB4	chr12	70760850	+	MSRB3	chr12	65881784	+
In-frame	ENST00000320580	ENST00000374409		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
In-frame	ENST00000320580	ENST00000440416		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
In-frame	ENST00000320580	ENST00000003583		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
5CDS-5UTR	ENST00000320580	ENST00000468303		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
5CDS-5UTR	ENST00000320580	ENST00000337248		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3CDS	ENST00000529757	ENST00000374409		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3CDS	ENST00000529757	ENST00000440416		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3CDS	ENST00000529757	ENST00000003583		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-5UTR	ENST00000529757	ENST00000468303		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-5UTR	ENST00000529757	ENST00000337248		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3CDS	ENST00000524815	ENST00000374409		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3CDS	ENST00000524815	ENST00000440416		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3CDS	ENST00000524815	ENST00000003583		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-5UTR	ENST00000524815	ENST00000468303		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-5UTR	ENST00000524815	ENST00000337248		TCGA	LD	BLCA	TCGA-DK-AA75-01A	PACS1	chr11	65838313	+	STPG1	chr1	24687531	-
intron-3UTR	ENST00000314571	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
5CDS-3UTR	ENST00000383797	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
5CDS-3UTR	ENST00000454502	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
5CDS-3UTR	ENST00000402228	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
intron-3UTR	ENST00000444864	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
5CDS-3UTR	ENST00000284995	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
intron-3UTR	ENST00000415684	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
intron-3UTR	ENST00000475595	ENST00000432424		TCGA	LD	BLCA	TCGA-DK-AA75-01A	TSEN2	chr3	12546730	+	SYN2	chr3	12182151	+
In-frame	ENST00000566423	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000566423	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000566423	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000566423	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000566423	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000249822	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000249822	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000249822	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000249822	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000249822	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000561650	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000561650	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000561650	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000561650	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000561650	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000568196	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000568196	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000568196	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000568196	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000568196	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563277	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563277	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563277	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563277	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563277	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000567669	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000567669	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000567669	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000567669	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000567669	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000569723	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000569723	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000569723	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000569723	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000569723	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000569281	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000569281	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000569281	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000569281	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000569281	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000564163	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000564163	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000564163	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000564163	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
In-frame	ENST00000564163	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563566	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563566	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563566	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563566	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000563566	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000561971	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000561971	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000561971	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000561971	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000561971	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000565288	ENST00000399231		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000565288	ENST00000356338		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000565288	ENST00000358212		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000565288	ENST00000399233		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
intron-3CDS	ENST00000565288	ENST00000553916		TCGA	LD	BLCA	TCGA-DK-AA76-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52606400	-
Frame-shit	ENST00000294981	ENST00000340758		TCGA	LD	BLCA	TCGA-DK-AA76-01A	MAPKAPK2	chr1	206858853	+	IL19	chr1	207010006	+
5CDS-5UTR	ENST00000294981	ENST00000270218		TCGA	LD	BLCA	TCGA-DK-AA76-01A	MAPKAPK2	chr1	206858853	+	IL19	chr1	207010006	+
Frame-shit	ENST00000367103	ENST00000340758		TCGA	LD	BLCA	TCGA-DK-AA76-01A	MAPKAPK2	chr1	206858853	+	IL19	chr1	207010006	+
5CDS-5UTR	ENST00000367103	ENST00000270218		TCGA	LD	BLCA	TCGA-DK-AA76-01A	MAPKAPK2	chr1	206858853	+	IL19	chr1	207010006	+
intron-3CDS	ENST00000479009	ENST00000340758		TCGA	LD	BLCA	TCGA-DK-AA76-01A	MAPKAPK2	chr1	206858853	+	IL19	chr1	207010006	+
intron-5UTR	ENST00000479009	ENST00000270218		TCGA	LD	BLCA	TCGA-DK-AA76-01A	MAPKAPK2	chr1	206858853	+	IL19	chr1	207010006	+
intron-intron	ENST00000465198	ENST00000464527		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	C2orf61	chr2	47397903	-
intron-intron	ENST00000465198	ENST00000445927		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	C2orf61	chr2	47397903	-
intron-intron	ENST00000465198	ENST00000294947		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000238738	ENST00000464527		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000238738	ENST00000445927		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000238738	ENST00000294947		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	C2orf61	chr2	47397903	-
intron-3CDS	ENST00000465198	ENST00000272298		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	CALM2	chr2	47397903	-
intron-5UTR	ENST00000465198	ENST00000409563		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	CALM2	chr2	47397903	-
intron-5UTR	ENST00000465198	ENST00000484408		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	CALM2	chr2	47397903	-
In-frame	ENST00000238738	ENST00000272298		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	CALM2	chr2	47397903	-
5CDS-5UTR	ENST00000238738	ENST00000409563		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	CALM2	chr2	47397903	-
5CDS-5UTR	ENST00000238738	ENST00000484408		TCGA	LD	BLCA	TCGA-DK-AA77-01A	RHOQ	chr2	46770951	+	CALM2	chr2	47397903	-
5CDS-5UTR	ENST00000558134	ENST00000339094		TCGA	LD	BLCA	TCGA-DK-AA77-01A	SEC11A	chr15	85223944	-	UBE2Q2P1	chr15	85089508	-
5CDS-5UTR	ENST00000560266	ENST00000339094		TCGA	LD	BLCA	TCGA-DK-AA77-01A	SEC11A	chr15	85223944	-	UBE2Q2P1	chr15	85089508	-
5CDS-5UTR	ENST00000268220	ENST00000339094		TCGA	LD	BLCA	TCGA-DK-AA77-01A	SEC11A	chr15	85223944	-	UBE2Q2P1	chr15	85089508	-
5CDS-5UTR	ENST00000455959	ENST00000339094		TCGA	LD	BLCA	TCGA-DK-AA77-01A	SEC11A	chr15	85223944	-	UBE2Q2P1	chr15	85089508	-
5CDS-5UTR	ENST00000268712	ENST00000312177		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
5CDS-intron	ENST00000268712	ENST00000519354		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
5CDS-5UTR	ENST00000395851	ENST00000312177		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
5CDS-intron	ENST00000395851	ENST00000519354		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
intron-5UTR	ENST00000395857	ENST00000312177		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
intron-intron	ENST00000395857	ENST00000519354		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
intron-5UTR	ENST00000395848	ENST00000312177		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
intron-intron	ENST00000395848	ENST00000519354		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
intron-5UTR	ENST00000583226	ENST00000312177		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
intron-intron	ENST00000583226	ENST00000519354		TCGA	LD	BLCA	TCGA-E5-A2PC-01A	NCOR1	chr17	15989596	-	CDRT4	chr17	15343599	-
Frame-shit	ENST00000340250	ENST00000199389		TCGA	LD	BLCA	TCGA-E5-A4TZ-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
Frame-shit	ENST00000340250	ENST00000536084		TCGA	LD	BLCA	TCGA-E5-A4TZ-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
5CDS-intron	ENST00000340250	ENST00000495565		TCGA	LD	BLCA	TCGA-E5-A4TZ-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
Frame-shit	ENST00000382361	ENST00000199389		TCGA	LD	BLCA	TCGA-E5-A4TZ-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
Frame-shit	ENST00000382361	ENST00000536084		TCGA	LD	BLCA	TCGA-E5-A4TZ-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
5CDS-intron	ENST00000382361	ENST00000495565		TCGA	LD	BLCA	TCGA-E5-A4TZ-01A	FSCN1	chr7	5633399	+	EIF2AK1	chr7	6066592	-
In-frame	ENST00000216237	ENST00000406644		TCGA	LD	BLCA	TCGA-E7-A3X6-01A	L3MBTL2	chr22	41605937	+	TEF	chr22	41783355	+
In-frame	ENST00000216237	ENST00000266304		TCGA	LD	BLCA	TCGA-E7-A3X6-01A	L3MBTL2	chr22	41605937	+	TEF	chr22	41783355	+
3UTR-3CDS	ENST00000489136	ENST00000406644		TCGA	LD	BLCA	TCGA-E7-A3X6-01A	L3MBTL2	chr22	41605937	+	TEF	chr22	41783355	+
3UTR-3CDS	ENST00000489136	ENST00000266304		TCGA	LD	BLCA	TCGA-E7-A3X6-01A	L3MBTL2	chr22	41605937	+	TEF	chr22	41783355	+
In-frame	ENST00000302349	ENST00000267202		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	MPHOSPH9	chr12	123678933	-	VPS37B	chr12	123355608	-
In-frame	ENST00000541076	ENST00000267202		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	MPHOSPH9	chr12	123678933	-	VPS37B	chr12	123355608	-
Frame-shit	ENST00000606320	ENST00000267202		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	MPHOSPH9	chr12	123678933	-	VPS37B	chr12	123355608	-
In-frame	ENST00000392425	ENST00000267202		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	MPHOSPH9	chr12	123678933	-	VPS37B	chr12	123355608	-
intron-3CDS	ENST00000539639	ENST00000267202		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	MPHOSPH9	chr12	123678933	-	VPS37B	chr12	123355608	-
5CDS-intron	ENST00000335272	ENST00000479781		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	PITPNB	chr22	28306952	-	FAM25C	chr10	49203544	-
5CDS-intron	ENST00000335272	ENST00000342763		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	PITPNB	chr22	28306952	-	FAM25C	chr10	49203544	-
5CDS-intron	ENST00000320996	ENST00000479781		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	PITPNB	chr22	28306952	-	FAM25C	chr10	49203544	-
5CDS-intron	ENST00000320996	ENST00000342763		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	PITPNB	chr22	28306952	-	FAM25C	chr10	49203544	-
5CDS-intron	ENST00000455418	ENST00000479781		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	PITPNB	chr22	28306952	-	FAM25C	chr10	49203544	-
5CDS-intron	ENST00000455418	ENST00000342763		TCGA	LD	BLCA	TCGA-E7-A4IJ-01A	PITPNB	chr22	28306952	-	FAM25C	chr10	49203544	-
5CDS-intron	ENST00000367265	ENST00000408388		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	KDM5B	chr1	202718073	-	PVT1	chr8	128867401	+
5CDS-intron	ENST00000367264	ENST00000408388		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	KDM5B	chr1	202718073	-	PVT1	chr8	128867401	+
intron-intron	ENST00000456180	ENST00000408388		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	KDM5B	chr1	202718073	-	PVT1	chr8	128867401	+
5CDS-intron	ENST00000311812	ENST00000520643		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000311812	ENST00000251809		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000311812	ENST00000520508		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000311812	ENST00000388798		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000311812	ENST00000523302		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000428383	ENST00000520643		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000428383	ENST00000251809		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000428383	ENST00000520508		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000428383	ENST00000388798		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000428383	ENST00000523302		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5UTR-intron	ENST00000519521	ENST00000520643		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5UTR-intron	ENST00000519521	ENST00000251809		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5UTR-intron	ENST00000519521	ENST00000520508		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5UTR-intron	ENST00000519521	ENST00000388798		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5UTR-intron	ENST00000519521	ENST00000523302		TCGA	LD	BLCA	TCGA-E7-A4XJ-01A	SNX31	chr8	101608867	-	SPAG1	chr8	101271270	+
5CDS-intron	ENST00000404767	ENST00000544935		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000404767	ENST00000537384		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000404767	ENST00000406797		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000404767	ENST00000403562		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000404767	ENST00000360274		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-5UTR	ENST00000404767	ENST00000488474		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000389470	ENST00000544935		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000389470	ENST00000537384		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000389470	ENST00000406797		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000389470	ENST00000403562		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-intron	ENST00000389470	ENST00000360274		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
5CDS-5UTR	ENST00000389470	ENST00000488474		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
intron-intron	ENST00000493531	ENST00000544935		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
intron-intron	ENST00000493531	ENST00000537384		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
intron-intron	ENST00000493531	ENST00000406797		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
intron-intron	ENST00000493531	ENST00000403562		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
intron-intron	ENST00000493531	ENST00000360274		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
intron-5UTR	ENST00000493531	ENST00000488474		TCGA	LD	BLCA	TCGA-E7-A541-01A	INTS1	chr7	1524734	-	PRKAR1B	chr7	736739	-
Frame-shit	ENST00000371714	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000371714	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000371714	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000371710	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000371710	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000371710	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000337809	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000337809	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000337809	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000435686	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000435686	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5UTR-intron	ENST00000435686	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000447887	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000447887	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000447887	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000453295	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000453295	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000453295	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000428468	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000428468	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000428468	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000530544	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
Frame-shit	ENST00000530544	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5CDS-intron	ENST00000530544	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000531828	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000531828	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-intron	ENST00000531828	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000361556	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000361556	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-intron	ENST00000361556	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000473207	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000473207	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-intron	ENST00000473207	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000462759	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000462759	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-intron	ENST00000462759	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000486942	ENST00000317551		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-3CDS	ENST00000486942	ENST00000422340		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
intron-intron	ENST00000486942	ENST00000547852		TCGA	LD	BLCA	TCGA-E7-A541-01A	OSBPL9	chr1	52179751	+	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000415922	ENST00000287152		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000394362		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000373213		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000373216		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000229913		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000373215		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000538893		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000415922	ENST00000541946		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-intron	ENST00000415922	ENST00000465719		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-3CDS	ENST00000471278	ENST00000287152		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000394362		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000373213		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000373216		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000229913		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000373215		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000538893		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000471278	ENST00000541946		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-intron	ENST00000471278	ENST00000465719		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-3CDS	ENST00000461899	ENST00000287152		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000394362		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000373213		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000373216		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000229913		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000373215		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000538893		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-5UTR	ENST00000461899	ENST00000541946		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
5UTR-intron	ENST00000461899	ENST00000465719		TCGA	LD	BLCA	TCGA-E7-A541-01A	ZNF322	chr6	26658786	-	KIF6	chr6	39398937	-
intron-3CDS	ENST00000280772	ENST00000337910		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000280772	ENST00000357917		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-intron	ENST00000280772	ENST00000490827		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
Frame-shit	ENST00000373827	ENST00000337910		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
Frame-shit	ENST00000373827	ENST00000357917		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
5CDS-intron	ENST00000373827	ENST00000490827		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000355288	ENST00000337910		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000355288	ENST00000357917		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-intron	ENST00000355288	ENST00000490827		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000503366	ENST00000337910		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000503366	ENST00000357917		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-intron	ENST00000503366	ENST00000490827		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
5UTR-3CDS	ENST00000510382	ENST00000337910		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
5UTR-3CDS	ENST00000510382	ENST00000357917		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
5UTR-intron	ENST00000510382	ENST00000490827		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000460468	ENST00000337910		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-3CDS	ENST00000460468	ENST00000357917		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
intron-intron	ENST00000460468	ENST00000490827		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62652753	-
3UTR-3CDS	ENST00000527001	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
3UTR-3CDS	ENST00000527001	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
3UTR-3CDS	ENST00000527001	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
3UTR-3UTR	ENST00000527001	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3CDS	ENST00000257831	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3CDS	ENST00000257831	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3CDS	ENST00000257831	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3UTR	ENST00000257831	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3CDS	ENST00000450654	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3CDS	ENST00000450654	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3CDS	ENST00000450654	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5UTR-3UTR	ENST00000450654	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000530286	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000530286	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000530286	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3UTR	ENST00000530286	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000533754	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000533754	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000533754	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3UTR	ENST00000533754	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000531728	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000531728	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000531728	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3UTR	ENST00000531728	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000531794	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000531794	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000531794	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3UTR	ENST00000531794	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000527935	ENST00000409074		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000527935	ENST00000556253		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3CDS	ENST00000527935	ENST00000247618		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
intron-3UTR	ENST00000527935	ENST00000477116		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	EHF	chr11	34642775	+	APOPT1	chr14	104037960	+
5CDS-intron	ENST00000296440	ENST00000304043		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000296440	ENST00000506207		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000296440	ENST00000508488		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000296440	ENST00000506908		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000296440	ENST00000513012		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358459	ENST00000304043		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358459	ENST00000506207		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358459	ENST00000508488		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358459	ENST00000506908		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358459	ENST00000513012		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358536	ENST00000304043		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358536	ENST00000506207		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358536	ENST00000508488		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358536	ENST00000506908		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000358536	ENST00000513012		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000448774	ENST00000304043		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000448774	ENST00000506207		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000448774	ENST00000508488		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000448774	ENST00000506908		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000448774	ENST00000513012		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000456774	ENST00000304043		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000456774	ENST00000506207		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000456774	ENST00000508488		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000456774	ENST00000506908		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
5CDS-intron	ENST00000456774	ENST00000513012		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
intron-intron	ENST00000465117	ENST00000304043		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
intron-intron	ENST00000465117	ENST00000506207		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
intron-intron	ENST00000465117	ENST00000508488		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
intron-intron	ENST00000465117	ENST00000506908		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
intron-intron	ENST00000465117	ENST00000513012		TCGA	LD	BLCA	TCGA-E7-A5KE-01A	PLXNB1	chr3	48450979	-	HINT1	chr5	130507426	-
Frame-shit	ENST00000382869	ENST00000382778		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382869	ENST00000351808		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382869	ENST00000319980		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382869	ENST00000537103		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
5CDS-intron	ENST00000382869	ENST00000461115		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382881	ENST00000382778		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382881	ENST00000351808		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382881	ENST00000319980		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382881	ENST00000537103		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-intron	ENST00000382881	ENST00000461115		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382874	ENST00000382778		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382874	ENST00000351808		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382874	ENST00000319980		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382874	ENST00000537103		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
5CDS-intron	ENST00000382874	ENST00000461115		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382871	ENST00000382778		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382871	ENST00000351808		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382871	ENST00000319980		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
Frame-shit	ENST00000382871	ENST00000537103		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
5CDS-intron	ENST00000382871	ENST00000461115		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382883	ENST00000382778		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382883	ENST00000351808		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382883	ENST00000319980		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-3CDS	ENST00000382883	ENST00000537103		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
intron-intron	ENST00000382883	ENST00000461115		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
3UTR-3CDS	ENST00000494061	ENST00000382778		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
3UTR-3CDS	ENST00000494061	ENST00000351808		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
3UTR-3CDS	ENST00000494061	ENST00000319980		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
3UTR-3CDS	ENST00000494061	ENST00000537103		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
3UTR-intron	ENST00000494061	ENST00000461115		TCGA	LD	BLCA	TCGA-E7-A677-01A	ZMYM2	chr13	20656270	+	IFT88	chr13	21212471	+
5CDS-intron	ENST00000202028	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000202028	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000202028	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000202028	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000202028	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373950	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373950	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373950	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373950	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373950	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000441639	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000441639	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000441639	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000441639	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000441639	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373946	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373946	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373946	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373946	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373946	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000338074	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000338074	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000338074	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000338074	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000338074	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373941	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373941	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373941	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373941	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000373941	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
intron-intron	ENST00000479336	ENST00000327155		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
intron-intron	ENST00000479336	ENST00000399722		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
intron-intron	ENST00000479336	ENST00000399725		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
intron-intron	ENST00000479336	ENST00000360790		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
intron-intron	ENST00000479336	ENST00000581687		TCGA	LD	BLCA	TCGA-E7-A6MD-01A	EPB41L1	chr20	34766594	+	RBBP8	chr18	20491563	+
5CDS-3UTR	ENST00000586622	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000586622	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000586622	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-3UTR	ENST00000588460	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000588460	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000588460	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-3UTR	ENST00000591864	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000591864	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000591864	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-3UTR	ENST00000590393	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000590393	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000590393	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-3UTR	ENST00000593181	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000593181	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000593181	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-3UTR	ENST00000355954	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000355954	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000355954	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-3UTR	ENST00000336509	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000336509	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000336509	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-3UTR	ENST00000590514	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000590514	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
5CDS-intron	ENST00000590514	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-3UTR	ENST00000590070	ENST00000592432		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000590070	ENST00000592014		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
intron-intron	ENST00000590070	ENST00000586148		TCGA	LD	BLCA	TCGA-E7-A6ME-01A	MFSD11	chr17	74738355	+	PRCD	chr17	74549191	+
Frame-shit	ENST00000575403	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000575403	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000575403	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000575403	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000575403	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
Frame-shit	ENST00000477478	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000477478	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000477478	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000477478	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000477478	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
intron-3CDS	ENST00000468679	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
intron-intron	ENST00000468679	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
intron-intron	ENST00000468679	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
intron-intron	ENST00000468679	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
intron-3UTR	ENST00000468679	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000461069	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000461069	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000461069	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000461069	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000461069	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000395615	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000395615	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000395615	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000395615	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000395615	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000261499	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000261499	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000261499	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000261499	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000261499	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000395616	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000395616	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000395616	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000395616	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000395616	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000268841	ENST00000293350		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000268841	ENST00000540132		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000268841	ENST00000455361		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000268841	ENST00000433981		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000268841	ENST00000598015		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	B9D1	chr17	19263633	-	ALDH16A1	chr19	49961743	+
5UTR-3CDS	ENST00000318948	ENST00000284881		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000318948	ENST00000400559		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000318948	ENST00000400558		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-intron	ENST00000318948	ENST00000493464		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000400199	ENST00000284881		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000400199	ENST00000400559		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000400199	ENST00000400558		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-intron	ENST00000400199	ENST00000493464		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000400202	ENST00000284881		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000400202	ENST00000400559		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000400202	ENST00000400558		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-intron	ENST00000400202	ENST00000493464		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	NRIP1	chr21	16437066	-	C21orf91	chr21	19165898	-
5UTR-3CDS	ENST00000427277	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
5UTR-3CDS	ENST00000427277	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
Frame-shit	ENST00000297954	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
Frame-shit	ENST00000297954	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
Frame-shit	ENST00000395475	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
Frame-shit	ENST00000395475	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
5UTR-3CDS	ENST00000356055	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
5UTR-3CDS	ENST00000356055	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
5UTR-3CDS	ENST00000349097	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
5UTR-3CDS	ENST00000349097	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
Frame-shit	ENST00000395477	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
Frame-shit	ENST00000395477	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
intron-3CDS	ENST00000471076	ENST00000444129		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
intron-3CDS	ENST00000471076	ENST00000421138		TCGA	LD	BLCA	TCGA-E7-A7DV-01A	WNK2	chr9	95947892	+	RECQL	chr12	21623280	-
5CDS-5UTR	ENST00000209873	ENST00000550241		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000209873	ENST00000602871		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000209873	ENST00000394349		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000209873	ENST00000549164		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000209873	ENST00000338662		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-5UTR	ENST00000394384	ENST00000550241		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000394384	ENST00000602871		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000394384	ENST00000394349		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000394384	ENST00000549164		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000394384	ENST00000338662		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-5UTR	ENST00000550286	ENST00000550241		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000550286	ENST00000602871		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000550286	ENST00000394349		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000550286	ENST00000549164		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5CDS-intron	ENST00000550286	ENST00000338662		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5UTR-5UTR	ENST00000549983	ENST00000550241		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5UTR-intron	ENST00000549983	ENST00000602871		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5UTR-intron	ENST00000549983	ENST00000394349		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5UTR-intron	ENST00000549983	ENST00000549164		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5UTR-intron	ENST00000549983	ENST00000338662		TCGA	LD	BLCA	TCGA-E7-A85H-01A	AAAS	chr12	53708082	-	ATP5G2	chr12	54026850	-
5UTR-3CDS	ENST00000329478	ENST00000336761		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ADAT3	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3CDS	ENST00000329478	ENST00000233078		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ADAT3	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3UTR	ENST00000329478	ENST00000586579		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ADAT3	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3CDS	ENST00000602400	ENST00000336761		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ADAT3	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3CDS	ENST00000602400	ENST00000233078		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ADAT3	chr19	1905438	+	DAZAP1	chr19	1417499	+
5UTR-3UTR	ENST00000602400	ENST00000586579		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ADAT3	chr19	1905438	+	DAZAP1	chr19	1417499	+
5CDS-intron	ENST00000368346	ENST00000368315		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000368346	ENST00000313695		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000368346	ENST00000361247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000368346	ENST00000368316		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000368346	ENST00000462460		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000368346	ENST00000477754		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000368346	ENST00000313667		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000368315		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000313695		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000361247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000368316		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000462460		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000477754		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-intron	ENST00000392403	ENST00000313667		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000368315		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000313695		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000361247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000368316		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000462460		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000477754		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
intron-intron	ENST00000548830	ENST00000313667		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ASH1L	chr1	155311727	-	ARHGEF2	chr1	155973520	-
5CDS-3UTR	ENST00000369016	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000369016	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000369016	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000369016	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000369016	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000369014	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000369014	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000369014	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000369014	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000369014	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000369009	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000369009	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000369009	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000369009	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000369009	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000339643	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000339643	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000339643	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000339643	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000339643	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000271690	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000271690	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000271690	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000271690	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000271690	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000356527	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000356527	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000356527	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000356527	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000356527	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000503345	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000503345	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000503345	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000503345	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000503345	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000503241	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000503241	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000503241	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000503241	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000503241	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000362052	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000362052	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000362052	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000362052	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
intron-intron	ENST00000362052	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000361532	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000361532	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000361532	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000361532	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000361532	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000361631	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000361631	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000361631	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000361631	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000361631	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000513281	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000513281	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000513281	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000513281	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000513281	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000354702	ENST00000492220		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000354702	ENST00000401000		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5UTR-3UTR	ENST00000354702	ENST00000539519		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000354702	ENST00000369067		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5UTR-intron	ENST00000354702	ENST00000369068		TCGA	LD	BLCA	TCGA-E7-A85H-01A	ENSA	chr1	150599943	-	RPRD2	chr1	150429764	+
5UTR-3CDS	ENST00000396113	ENST00000523731		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
5UTR-3CDS	ENST00000396113	ENST00000447247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
5UTR-intron	ENST00000396113	ENST00000520845		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000286687	ENST00000523731		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000286687	ENST00000447247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-intron	ENST00000286687	ENST00000520845		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
5UTR-3CDS	ENST00000396111	ENST00000523731		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
5UTR-3CDS	ENST00000396111	ENST00000447247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
5UTR-intron	ENST00000396111	ENST00000520845		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000521840	ENST00000523731		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000521840	ENST00000447247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-intron	ENST00000521840	ENST00000520845		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000542894	ENST00000523731		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000542894	ENST00000447247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-intron	ENST00000542894	ENST00000520845		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000396124	ENST00000523731		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-3CDS	ENST00000396124	ENST00000447247		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
intron-intron	ENST00000396124	ENST00000520845		TCGA	LD	BLCA	TCGA-E7-A85H-01A	NDUFAF6	chr8	95970407	+	INTS8	chr8	95885602	+
5UTR-3CDS	ENST00000336787	ENST00000448430		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000336787	ENST00000380679		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000336787	ENST00000457155		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000336787	ENST00000348518		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000336787	ENST00000321149		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000396307	ENST00000448430		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000396307	ENST00000380679		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000396307	ENST00000457155		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000396307	ENST00000348518		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000396307	ENST00000321149		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000564609	ENST00000448430		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000564609	ENST00000380679		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000564609	ENST00000457155		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000564609	ENST00000348518		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000564609	ENST00000321149		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000569493	ENST00000448430		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000569493	ENST00000380679		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000569493	ENST00000457155		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000569493	ENST00000348518		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5UTR-3CDS	ENST00000569493	ENST00000321149		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
intron-3CDS	ENST00000561545	ENST00000448430		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
intron-3CDS	ENST00000561545	ENST00000380679		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
intron-3CDS	ENST00000561545	ENST00000457155		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
intron-3CDS	ENST00000561545	ENST00000348518		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
intron-3CDS	ENST00000561545	ENST00000321149		TCGA	LD	BLCA	TCGA-E7-A85H-01A	RAB27A	chr15	55562363	-	DYX1C1	chr15	55731779	-
5CDS-intron	ENST00000314616	ENST00000379061		TCGA	LD	BLCA	TCGA-E7-A85H-01A	SUPT6H	chr17	27003249	+	SARM1	chr17	26730838	+
5CDS-intron	ENST00000314616	ENST00000457710		TCGA	LD	BLCA	TCGA-E7-A85H-01A	SUPT6H	chr17	27003249	+	SARM1	chr17	26730838	+
5CDS-intron	ENST00000347486	ENST00000379061		TCGA	LD	BLCA	TCGA-E7-A85H-01A	SUPT6H	chr17	27003249	+	SARM1	chr17	26730838	+
5CDS-intron	ENST00000347486	ENST00000457710		TCGA	LD	BLCA	TCGA-E7-A85H-01A	SUPT6H	chr17	27003249	+	SARM1	chr17	26730838	+
5UTR-3UTR	ENST00000475480	ENST00000296252		TCGA	LD	BLCA	TCGA-E7-A85H-01A	TMEM41A	chr3	185212411	-	LIPH	chr3	185225140	-
5UTR-intron	ENST00000475480	ENST00000424591		TCGA	LD	BLCA	TCGA-E7-A85H-01A	TMEM41A	chr3	185212411	-	LIPH	chr3	185225140	-
5CDS-3UTR	ENST00000421852	ENST00000296252		TCGA	LD	BLCA	TCGA-E7-A85H-01A	TMEM41A	chr3	185212411	-	LIPH	chr3	185225140	-
5CDS-intron	ENST00000421852	ENST00000424591		TCGA	LD	BLCA	TCGA-E7-A85H-01A	TMEM41A	chr3	185212411	-	LIPH	chr3	185225140	-
intron-3UTR	ENST00000296254	ENST00000296252		TCGA	LD	BLCA	TCGA-E7-A85H-01A	TMEM41A	chr3	185212411	-	LIPH	chr3	185225140	-
intron-intron	ENST00000296254	ENST00000424591		TCGA	LD	BLCA	TCGA-E7-A85H-01A	TMEM41A	chr3	185212411	-	LIPH	chr3	185225140	-
Frame-shit	ENST00000225426	ENST00000511438		TCGA	LD	BLCA	TCGA-E7-A97Q-01A	PSMB3	chr17	36909587	+	KIAA1257	chr3	128629176	-
5CDS-intron	ENST00000225426	ENST00000265068		TCGA	LD	BLCA	TCGA-E7-A97Q-01A	PSMB3	chr17	36909587	+	KIAA1257	chr3	128629176	-
5CDS-intron	ENST00000225426	ENST00000510149		TCGA	LD	BLCA	TCGA-E7-A97Q-01A	PSMB3	chr17	36909587	+	KIAA1257	chr3	128629176	-
5CDS-intron	ENST00000225426	ENST00000515659		TCGA	LD	BLCA	TCGA-E7-A97Q-01A	PSMB3	chr17	36909587	+	KIAA1257	chr3	128629176	-
Frame-shit	ENST00000355431	ENST00000247194		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-intron	ENST00000355431	ENST00000543619		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-5UTR	ENST00000355431	ENST00000487285		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
Frame-shit	ENST00000348476	ENST00000247194		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-intron	ENST00000348476	ENST00000543619		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-5UTR	ENST00000348476	ENST00000487285		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
Frame-shit	ENST00000395168	ENST00000247194		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-intron	ENST00000395168	ENST00000543619		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-5UTR	ENST00000395168	ENST00000487285		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
Frame-shit	ENST00000431317	ENST00000247194		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-intron	ENST00000431317	ENST00000543619		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-5UTR	ENST00000431317	ENST00000487285		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
intron-3CDS	ENST00000553355	ENST00000247194		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
intron-intron	ENST00000553355	ENST00000543619		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
intron-5UTR	ENST00000553355	ENST00000487285		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ARID4A	chr14	58814596	+	L3HYPDH	chr14	59946069	-
5CDS-intron	ENST00000343823	ENST00000361488		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-3UTR	ENST00000343823	ENST00000520369		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-intron	ENST00000250635	ENST00000361488		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-3UTR	ENST00000250635	ENST00000520369		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-intron	ENST00000545394	ENST00000361488		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-3UTR	ENST00000545394	ENST00000520369		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-intron	ENST00000428278	ENST00000361488		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-3UTR	ENST00000428278	ENST00000520369		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-intron	ENST00000521652	ENST00000361488		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5CDS-3UTR	ENST00000521652	ENST00000520369		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
3UTR-intron	ENST00000524263	ENST00000361488		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
3UTR-3UTR	ENST00000524263	ENST00000520369		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	ASH2L	chr8	37968351	+	FAM110B	chr8	59110390	+
5UTR-intron	ENST00000519824	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000522746	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000523509	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000401979	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000519110	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
intron-intron	ENST00000522250	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000517654	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000519540	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000522941	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
5UTR-intron	ENST00000518879	ENST00000502675		TCGA	LD	BLCA	TCGA-FD-A3B3-01A	FAM49B	chr8	130915558	-	ZNF826P	chr19	20451910	-
In-frame	ENST00000361737	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361737	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361737	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361737	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000361737	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000361737	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000545242	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000545242	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000545242	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000545242	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000545242	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000545242	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000546334	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000546334	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000546334	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000546334	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000546334	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000546334	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000296372	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000296372	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000296372	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000296372	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000296372	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000296372	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5UTR-3CDS	ENST00000318888	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5UTR-3CDS	ENST00000318888	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5UTR-3CDS	ENST00000318888	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5UTR-3CDS	ENST00000318888	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5UTR-intron	ENST00000318888	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5UTR-intron	ENST00000318888	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000514025	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000514025	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000514025	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000514025	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-intron	ENST00000514025	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-intron	ENST00000514025	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000447017	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000447017	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000447017	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000447017	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000447017	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000447017	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361581	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361581	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361581	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000361581	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000361581	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000361581	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000341937	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000341937	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000341937	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000341937	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000341937	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000341937	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000407564	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000407564	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000407564	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000407564	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000407564	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000407564	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000505872	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000505872	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000505872	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000505872	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000505872	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000505872	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000428004	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000428004	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000428004	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
In-frame	ENST00000428004	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000428004	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000428004	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000515079	ENST00000506140		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000515079	ENST00000515571		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000515079	ENST00000382599		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-3CDS	ENST00000515079	ENST00000507294		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-intron	ENST00000515079	ENST00000314348		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
intron-intron	ENST00000515079	ENST00000335585		TCGA	LD	BLCA	TCGA-FD-A3B4-01A	ABLIM2	chr4	8079355	-	PPP2R2C	chr4	6380299	-
5CDS-intron	ENST00000263094	ENST00000588030		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000589660		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000588090		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000591935		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000589710		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000588230		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000413636		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000586472		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000589686		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000444172		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000587323		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000320936		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000587896		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000589235		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000585630		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000586773		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000263094	ENST00000590188		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000588030		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000589660		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000588090		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000591935		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000589710		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000588230		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000413636		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000586472		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000589686		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000444172		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000587323		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000320936		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000587896		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000589235		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000585630		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000586773		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000433129	ENST00000590188		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000588030		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000589660		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000588090		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000591935		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000589710		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000588230		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000413636		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000586472		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000589686		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000444172		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000587323		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000320936		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000587896		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000589235		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000585630		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000586773		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-intron	ENST00000435683	ENST00000590188		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000588030		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000589660		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000588090		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000591935		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000589710		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000588230		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000413636		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000586472		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000589686		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000444172		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000587323		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000320936		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000587896		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000589235		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000585630		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000586773		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
intron-intron	ENST00000533574	ENST00000590188		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ABCA7	chr19	1049436	+	CIRBP	chr19	1264252	+
5CDS-5UTR	ENST00000304222	ENST00000266085		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ADORA2B	chr17	15848897	+	TIMP3	chr22	33197755	+
Frame-shit	ENST00000348959	ENST00000303383		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
5CDS-intron	ENST00000348959	ENST00000564272		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
Frame-shit	ENST00000261173	ENST00000303383		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
5CDS-intron	ENST00000261173	ENST00000564272		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
Frame-shit	ENST00000359142	ENST00000303383		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
5CDS-intron	ENST00000359142	ENST00000564272		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
Frame-shit	ENST00000428670	ENST00000303383		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
5CDS-intron	ENST00000428670	ENST00000564272		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
intron-3CDS	ENST00000393164	ENST00000303383		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
intron-intron	ENST00000393164	ENST00000564272		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	ATP2B1	chr12	90049456	-	SHCBP1	chr16	46638373	-
Frame-shit	ENST00000401998	ENST00000372141		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000401998	ENST00000404547		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000401998	ENST00000372142		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000401998	ENST00000404576		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000401998	ENST00000556918		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000401998	ENST00000537893		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000401998	ENST00000545131		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000361114	ENST00000372141		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000361114	ENST00000404547		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000361114	ENST00000372142		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000361114	ENST00000404576		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000361114	ENST00000556918		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000361114	ENST00000537893		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000361114	ENST00000545131		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398761	ENST00000372141		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398761	ENST00000404547		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398761	ENST00000372142		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398761	ENST00000404576		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398761	ENST00000556918		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000398761	ENST00000537893		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000398761	ENST00000545131		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000418483	ENST00000372141		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000418483	ENST00000404547		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000418483	ENST00000372142		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000418483	ENST00000404576		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000418483	ENST00000556918		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000418483	ENST00000537893		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000418483	ENST00000545131		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398763	ENST00000372141		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398763	ENST00000404547		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398763	ENST00000372142		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398763	ENST00000404576		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000398763	ENST00000556918		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000398763	ENST00000537893		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000398763	ENST00000545131		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000604025	ENST00000372141		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000604025	ENST00000404547		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000604025	ENST00000372142		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000604025	ENST00000404576		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000604025	ENST00000556918		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-intron	ENST00000604025	ENST00000537893		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
intron-intron	ENST00000604025	ENST00000545131		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MICU1	chr10	74234858	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000354329	ENST00000307768		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
5CDS-3UTR	ENST00000354329	ENST00000489724		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
intron-3CDS	ENST00000529578	ENST00000307768		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
intron-3UTR	ENST00000529578	ENST00000489724		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
Frame-shit	ENST00000533112	ENST00000307768		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
5CDS-3UTR	ENST00000533112	ENST00000489724		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
Frame-shit	ENST00000531253	ENST00000307768		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
5CDS-3UTR	ENST00000531253	ENST00000489724		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
Frame-shit	ENST00000527372	ENST00000307768		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
5CDS-3UTR	ENST00000527372	ENST00000489724		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	MYO18A	chr17	27492960	-	JAGN1	chr3	9934599	+
5UTR-3CDS	ENST00000292431	ENST00000409943		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	NACC1	chr19	13229268	+	CCDC74B	chr2	130900886	-
5UTR-3CDS	ENST00000292431	ENST00000310463		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	NACC1	chr19	13229268	+	CCDC74B	chr2	130900886	-
5UTR-5UTR	ENST00000292431	ENST00000392984		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	NACC1	chr19	13229268	+	CCDC74B	chr2	130900886	-
5UTR-5UTR	ENST00000292431	ENST00000409128		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	NACC1	chr19	13229268	+	CCDC74B	chr2	130900886	-
5UTR-5UTR	ENST00000292431	ENST00000409234		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	NACC1	chr19	13229268	+	CCDC74B	chr2	130900886	-
5CDS-intron	ENST00000266085	ENST00000358763		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	TIMP3	chr22	33198108	+	SYN3	chr22	33025854	-
5CDS-intron	ENST00000266085	ENST00000332840		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	TIMP3	chr22	33198108	+	SYN3	chr22	33025854	-
5CDS-intron	ENST00000266085	ENST00000467095		TCGA	LD	BLCA	TCGA-FD-A3B6-01A	TIMP3	chr22	33198108	+	SYN3	chr22	33025854	-
In-frame	ENST00000455089	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000455089	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000455089	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000455089	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
5CDS-intron	ENST00000455089	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000342916	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000342916	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000342916	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000342916	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
5CDS-intron	ENST00000342916	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000344576	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000344576	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000344576	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000344576	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
5CDS-intron	ENST00000344576	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000420316	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000420316	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000420316	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000420316	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
5CDS-intron	ENST00000420316	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000275493	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000275493	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000275493	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000275493	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
5CDS-intron	ENST00000275493	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000442591	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000442591	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000442591	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000442591	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
5CDS-intron	ENST00000442591	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
3UTR-3CDS	ENST00000463948	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
3UTR-3CDS	ENST00000463948	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
3UTR-3CDS	ENST00000463948	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
3UTR-3CDS	ENST00000463948	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
3UTR-intron	ENST00000463948	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
intron-3CDS	ENST00000454757	ENST00000345003		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
intron-3CDS	ENST00000454757	ENST00000296048		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
intron-3CDS	ENST00000454757	ENST00000483267		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
intron-3CDS	ENST00000454757	ENST00000484197		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
intron-intron	ENST00000454757	ENST00000479119		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	EGFR	chr7	55087058	+	GYG1	chr3	148711929	+
In-frame	ENST00000306024	ENST00000523037		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	LSM3	chr3	14225532	+	MRPL22	chr5	154335931	+
5CDS-5UTR	ENST00000306024	ENST00000265229		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	LSM3	chr3	14225532	+	MRPL22	chr5	154335931	+
5CDS-5UTR	ENST00000306024	ENST00000439747		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	LSM3	chr3	14225532	+	MRPL22	chr5	154335931	+
5CDS-5UTR	ENST00000306024	ENST00000522038		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	LSM3	chr3	14225532	+	MRPL22	chr5	154335931	+
5CDS-intron	ENST00000306024	ENST00000518364		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	LSM3	chr3	14225532	+	MRPL22	chr5	154335931	+
5UTR-3CDS	ENST00000455611	ENST00000395422		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	OTUD4	chr4	146080655	-	CHCHD2	chr7	56172168	-
Frame-shit	ENST00000454497	ENST00000395422		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	OTUD4	chr4	146080655	-	CHCHD2	chr7	56172168	-
In-frame	ENST00000447906	ENST00000395422		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	OTUD4	chr4	146080655	-	CHCHD2	chr7	56172168	-
intron-3CDS	ENST00000509620	ENST00000395422		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	OTUD4	chr4	146080655	-	CHCHD2	chr7	56172168	-
intron-3CDS	ENST00000296579	ENST00000395422		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	OTUD4	chr4	146080655	-	CHCHD2	chr7	56172168	-
In-frame	ENST00000283131	ENST00000535741		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	SMARCA5	chr4	144469293	+	LRBA	chr4	151358016	-
In-frame	ENST00000283131	ENST00000510413		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	SMARCA5	chr4	144469293	+	LRBA	chr4	151358016	-
5CDS-5UTR	ENST00000283131	ENST00000503716		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	SMARCA5	chr4	144469293	+	LRBA	chr4	151358016	-
5CDS-5UTR	ENST00000283131	ENST00000357115		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	SMARCA5	chr4	144469293	+	LRBA	chr4	151358016	-
5CDS-5UTR	ENST00000283131	ENST00000507224		TCGA	LD	BLCA	TCGA-FD-A3B7-01A	SMARCA5	chr4	144469293	+	LRBA	chr4	151358016	-
5CDS-intron	ENST00000354981	ENST00000470422		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000354981	ENST00000246043		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000354981	ENST00000377813		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000354981	ENST00000377807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000354981	ENST00000360807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000354981	ENST00000455029		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5UTR-intron	ENST00000378003	ENST00000470422		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5UTR-intron	ENST00000378003	ENST00000246043		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5UTR-5UTR	ENST00000378003	ENST00000377813		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5UTR-5UTR	ENST00000378003	ENST00000377807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5UTR-5UTR	ENST00000378003	ENST00000360807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5UTR-intron	ENST00000378003	ENST00000455029		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000355755	ENST00000470422		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000355755	ENST00000246043		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000355755	ENST00000377813		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000355755	ENST00000377807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000355755	ENST00000360807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000355755	ENST00000455029		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000408042	ENST00000470422		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000408042	ENST00000246043		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000408042	ENST00000377813		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000408042	ENST00000377807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000408042	ENST00000360807		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000408042	ENST00000455029		TCGA	LD	BLCA	TCGA-FD-A3B8-01A	KIF16B	chr20	16474936	-	RRBP1	chr20	17641173	-
Frame-shit	ENST00000378017	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
In-frame	ENST00000378017	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000378017	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000378017	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000378017	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
Frame-shit	ENST00000518547	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
In-frame	ENST00000518547	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000518547	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000518547	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000518547	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5UTR-3CDS	ENST00000354184	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5UTR-3CDS	ENST00000354184	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5UTR-intron	ENST00000354184	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5UTR-intron	ENST00000354184	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5UTR-intron	ENST00000354184	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000395508	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000395508	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000395508	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000395508	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000395508	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
Frame-shit	ENST00000325064	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
In-frame	ENST00000325064	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000325064	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000325064	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000325064	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000431961	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000431961	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000431961	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000431961	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000431961	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000523587	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000523587	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000523587	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000523587	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000523587	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000524090	ENST00000276692		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-3CDS	ENST00000524090	ENST00000519548		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000524090	ENST00000517678		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000524090	ENST00000521546		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
intron-intron	ENST00000524090	ENST00000605953		TCGA	LD	BLCA	TCGA-FD-A3N5-01A	MTSS1	chr8	125711767	-	TATDN1	chr8	125500937	-
Frame-shit	ENST00000294016	ENST00000204517		TCGA	LD	BLCA	TCGA-FD-A3N6-01A	ADCY9	chr16	4163751	-	TFAP4	chr16	4310596	-
intron-3CDS	ENST00000571889	ENST00000204517		TCGA	LD	BLCA	TCGA-FD-A3N6-01A	ADCY9	chr16	4163751	-	TFAP4	chr16	4310596	-
Frame-shit	ENST00000260502	ENST00000370331		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000260502	ENST00000540033		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000260502	ENST00000543509		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
5CDS-intron	ENST00000260502	ENST00000491940		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000370244	ENST00000370331		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000370244	ENST00000540033		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000370244	ENST00000543509		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
5CDS-intron	ENST00000370244	ENST00000491940		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
In-frame	ENST00000370243	ENST00000370331		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
In-frame	ENST00000370243	ENST00000540033		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
In-frame	ENST00000370243	ENST00000543509		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
5CDS-intron	ENST00000370243	ENST00000491940		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
In-frame	ENST00000370247	ENST00000370331		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
In-frame	ENST00000370247	ENST00000540033		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
In-frame	ENST00000370247	ENST00000543509		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
5CDS-intron	ENST00000370247	ENST00000491940		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000539242	ENST00000370331		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000539242	ENST00000540033		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000539242	ENST00000543509		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
5CDS-intron	ENST00000539242	ENST00000491940		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
intron-3CDS	ENST00000466632	ENST00000370331		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
intron-3CDS	ENST00000466632	ENST00000540033		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
intron-3CDS	ENST00000466632	ENST00000543509		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
intron-intron	ENST00000466632	ENST00000491940		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	BCAR3	chr1	94037227	-	EVI5	chr1	93202184	-
Frame-shit	ENST00000233057	ENST00000234170		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	EIF2AK2	chr2	37362627	-	CEBPZ	chr2	37429046	-
Frame-shit	ENST00000395127	ENST00000234170		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	EIF2AK2	chr2	37362627	-	CEBPZ	chr2	37429046	-
In-frame	ENST00000405334	ENST00000234170		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	EIF2AK2	chr2	37362627	-	CEBPZ	chr2	37429046	-
5CDS-3UTR	ENST00000366510	ENST00000483271		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	SCCPDH	chr1	246907427	+	CNST	chr1	246810441	+
5CDS-3UTR	ENST00000366510	ENST00000366513		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	SCCPDH	chr1	246907427	+	CNST	chr1	246810441	+
5CDS-3UTR	ENST00000366510	ENST00000366512		TCGA	LD	BLCA	TCGA-FD-A3NA-01A	SCCPDH	chr1	246907427	+	CNST	chr1	246810441	+
intron-5UTR	ENST00000605917	ENST00000541730		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CASC15	chr6	22020771	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000605917	ENST00000324607		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CASC15	chr6	22020771	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000605917	ENST00000536798		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CASC15	chr6	22020771	+	MBOAT1	chr6	20153000	-
Frame-shit	ENST00000290913	ENST00000393409		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
Frame-shit	ENST00000290913	ENST00000251772		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
5CDS-intron	ENST00000290913	ENST00000505278		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
Frame-shit	ENST00000508789	ENST00000393409		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
Frame-shit	ENST00000508789	ENST00000251772		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
5CDS-intron	ENST00000508789	ENST00000505278		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
intron-3CDS	ENST00000515867	ENST00000393409		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
intron-3CDS	ENST00000515867	ENST00000251772		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
intron-intron	ENST00000515867	ENST00000505278		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	CHCHD6	chr3	126423242	+	PLXNA1	chr3	126748717	+
Frame-shit	ENST00000402357	ENST00000399912		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000402357	ENST00000341339		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000402357	ENST00000329492		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000402357	ENST00000442429		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000402357	ENST00000008876		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000402357	ENST00000399908		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000358295	ENST00000399912		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000358295	ENST00000341339		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000358295	ENST00000329492		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000358295	ENST00000442429		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000358295	ENST00000008876		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
Frame-shit	ENST00000358295	ENST00000399908		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000473898	ENST00000399912		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000473898	ENST00000341339		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000473898	ENST00000329492		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000473898	ENST00000442429		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000473898	ENST00000008876		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000473898	ENST00000399908		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000406880	ENST00000399912		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000406880	ENST00000341339		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000406880	ENST00000329492		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000406880	ENST00000442429		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000406880	ENST00000008876		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
intron-3CDS	ENST00000406880	ENST00000399908		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	FAM19A5	chr22	49042558	+	MAPK8IP2	chr22	51048640	+
In-frame	ENST00000400338	ENST00000334018		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000400338	ENST00000404820		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000400338	ENST00000404755		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
5CDS-3UTR	ENST00000400338	ENST00000484039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000400335	ENST00000334018		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000400335	ENST00000404820		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000400335	ENST00000404755		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
5CDS-3UTR	ENST00000400335	ENST00000484039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000327813	ENST00000334018		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000327813	ENST00000404820		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000327813	ENST00000404755		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
5CDS-3UTR	ENST00000327813	ENST00000484039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000407188	ENST00000334018		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000407188	ENST00000404820		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
In-frame	ENST00000407188	ENST00000404755		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
5CDS-3UTR	ENST00000407188	ENST00000484039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
intron-3CDS	ENST00000479755	ENST00000334018		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
intron-3CDS	ENST00000479755	ENST00000404820		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
intron-3CDS	ENST00000479755	ENST00000404755		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
intron-3UTR	ENST00000479755	ENST00000484039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	KREMEN1	chr22	29494941	+	EMID1	chr22	29629368	+
Frame-shit	ENST00000472647	ENST00000367833		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	NME7	chr1	169292355	-	TIPRL	chr1	168153140	+
Frame-shit	ENST00000472647	ENST00000367830		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	NME7	chr1	169292355	-	TIPRL	chr1	168153140	+
In-frame	ENST00000367811	ENST00000367833		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	NME7	chr1	169292355	-	TIPRL	chr1	168153140	+
In-frame	ENST00000367811	ENST00000367830		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	NME7	chr1	169292355	-	TIPRL	chr1	168153140	+
5UTR-3CDS	ENST00000469474	ENST00000367833		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	NME7	chr1	169292355	-	TIPRL	chr1	168153140	+
5UTR-3CDS	ENST00000469474	ENST00000367830		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	NME7	chr1	169292355	-	TIPRL	chr1	168153140	+
Frame-shit	ENST00000485511	ENST00000372899		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
Frame-shit	ENST00000485511	ENST00000372901		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
5CDS-3UTR	ENST00000485511	ENST00000372883		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
5CDS-intron	ENST00000485511	ENST00000372903		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
Frame-shit	ENST00000394110	ENST00000372899		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
Frame-shit	ENST00000394110	ENST00000372901		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
5CDS-3UTR	ENST00000394110	ENST00000372883		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
5CDS-intron	ENST00000394110	ENST00000372903		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
Frame-shit	ENST00000472118	ENST00000372899		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
Frame-shit	ENST00000472118	ENST00000372901		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
5CDS-3UTR	ENST00000472118	ENST00000372883		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
5CDS-intron	ENST00000472118	ENST00000372903		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
intron-3CDS	ENST00000461010	ENST00000372899		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
intron-3CDS	ENST00000461010	ENST00000372901		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
intron-3UTR	ENST00000461010	ENST00000372883		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
intron-intron	ENST00000461010	ENST00000372903		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PPP2R5D	chr6	42957426	+	UBR2	chr6	42652532	+
intron-3CDS	ENST00000426496	ENST00000291971		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-intron	ENST00000426496	ENST00000590542		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-3CDS	ENST00000392078	ENST00000291971		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-intron	ENST00000392078	ENST00000590542		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-3CDS	ENST00000476522	ENST00000291971		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-intron	ENST00000476522	ENST00000590542		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-3CDS	ENST00000367742	ENST00000291971		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-intron	ENST00000367742	ENST00000590542		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-3CDS	ENST00000338920	ENST00000291971		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
intron-intron	ENST00000338920	ENST00000590542		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	PRRC2C	chr1	171560343	+	NLRP8	chr19	56485018	+
5UTR-3CDS	ENST00000265062	ENST00000405109		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-5UTR	ENST00000265062	ENST00000407609		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-5UTR	ENST00000265062	ENST00000405256		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-5UTR	ENST00000265062	ENST00000343941		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-intron	ENST00000265062	ENST00000492025		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-3CDS	ENST00000482525	ENST00000405109		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-5UTR	ENST00000482525	ENST00000407609		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-5UTR	ENST00000482525	ENST00000405256		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-5UTR	ENST00000482525	ENST00000343941		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-intron	ENST00000482525	ENST00000492025		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
intron-3CDS	ENST00000485280	ENST00000405109		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
intron-5UTR	ENST00000485280	ENST00000407609		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
intron-5UTR	ENST00000485280	ENST00000405256		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
intron-5UTR	ENST00000485280	ENST00000343941		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
intron-intron	ENST00000485280	ENST00000492025		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RAB7A	chr3	128445202	+	KBTBD12	chr3	127646607	+
5UTR-3CDS	ENST00000418115	ENST00000423994		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000429770		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000435965		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000266039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000395083		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000360963		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000424201		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000418115	ENST00000479441		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-intron	ENST00000418115	ENST00000487413		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000423994		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000429770		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000435965		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000266039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000395083		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000360963		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000424201		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000454011	ENST00000479441		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-intron	ENST00000454011	ENST00000487413		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000423994		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000429770		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000435965		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000266039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000395083		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000360963		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000424201		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-3CDS	ENST00000422781	ENST00000479441		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5UTR-intron	ENST00000422781	ENST00000487413		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000423994		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000429770		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000435965		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000266039		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000395083		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000360963		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000424201		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-3CDS	ENST00000265538	ENST00000479441		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
intron-intron	ENST00000265538	ENST00000487413		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	RHOA	chr3	49449253	-	CACNA2D2	chr3	50431599	-
5CDS-3UTR	ENST00000355235	ENST00000448248		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
5CDS-intron	ENST00000355235	ENST00000506142		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
5CDS-3UTR	ENST00000356834	ENST00000448248		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
5CDS-intron	ENST00000356834	ENST00000506142		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
intron-3UTR	ENST00000518085	ENST00000448248		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
intron-intron	ENST00000518085	ENST00000506142		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
intron-3UTR	ENST00000519746	ENST00000448248		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
intron-intron	ENST00000519746	ENST00000506142		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
intron-3UTR	ENST00000444477	ENST00000448248		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
intron-intron	ENST00000444477	ENST00000506142		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TBC1D9B	chr5	179301902	-	C5orf60	chr5	179068879	-
Frame-shit	ENST00000361136	ENST00000445105		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361136	ENST00000264730		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361136	ENST00000454309		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361136	ENST00000450716		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361136	ENST00000430714		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
5CDS-intron	ENST00000361136	ENST00000466144		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361875	ENST00000445105		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361875	ENST00000264730		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361875	ENST00000454309		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361875	ENST00000450716		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
Frame-shit	ENST00000361875	ENST00000430714		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
5CDS-intron	ENST00000361875	ENST00000466144		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000492828	ENST00000445105		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000492828	ENST00000264730		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000492828	ENST00000454309		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000492828	ENST00000450716		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000492828	ENST00000430714		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
intron-intron	ENST00000492828	ENST00000466144		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	TSC22D2	chr3	150129095	+	FGF12	chr3	191888445	-
5UTR-3CDS	ENST00000371399	ENST00000260102		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	YIPF1	chr1	54348786	-	MRPL15	chr8	55059942	+
Frame-shit	ENST00000072644	ENST00000260102		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	YIPF1	chr1	54348786	-	MRPL15	chr8	55059942	+
In-frame	ENST00000539954	ENST00000260102		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	YIPF1	chr1	54348786	-	MRPL15	chr8	55059942	+
intron-3CDS	ENST00000469457	ENST00000260102		TCGA	LD	BLCA	TCGA-FD-A3SJ-01A	YIPF1	chr1	54348786	-	MRPL15	chr8	55059942	+
In-frame	ENST00000346872	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346872	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346872	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346872	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346872	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000346872	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000394189	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000394189	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000394189	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000394189	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000394189	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000394189	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000439167	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000439167	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000439167	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000439167	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000439167	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-intron	ENST00000439167	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000535189	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000535189	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000535189	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000535189	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000535189	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-intron	ENST00000535189	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377944	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377944	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377944	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377944	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377944	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000377944	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377945	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377945	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377945	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377945	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377945	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000377945	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377952	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377952	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377952	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377952	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377952	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000377952	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377958	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377958	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377958	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377958	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000377958	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000377958	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346243	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346243	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346243	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346243	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000346243	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000346243	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000350532	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000350532	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000350532	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000350532	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000350532	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000350532	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000351680	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000351680	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000351680	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000351680	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000351680	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000351680	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000467757	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000467757	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000467757	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000467757	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000467757	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000467757	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000439016	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000439016	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000439016	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000439016	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000439016	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
5CDS-intron	ENST00000439016	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000583368	ENST00000394126		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000583368	ENST00000356271		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000583368	ENST00000394128		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000583368	ENST00000394127		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-3CDS	ENST00000583368	ENST00000501516		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
intron-intron	ENST00000583368	ENST00000479829		TCGA	LD	BLCA	TCGA-FD-A3SL-01A	IKZF3	chr17	37985640	-	MED24	chr17	38176186	-
In-frame	ENST00000425042	ENST00000420826		TCGA	LD	BLCA	TCGA-FD-A3SN-01A	HID1	chr17	72968686	-	SUMO2	chr17	73177283	-
In-frame	ENST00000425042	ENST00000314523		TCGA	LD	BLCA	TCGA-FD-A3SN-01A	HID1	chr17	72968686	-	SUMO2	chr17	73177283	-
5CDS-5UTR	ENST00000425042	ENST00000578238		TCGA	LD	BLCA	TCGA-FD-A3SN-01A	HID1	chr17	72968686	-	SUMO2	chr17	73177283	-
intron-3CDS	ENST00000532900	ENST00000420826		TCGA	LD	BLCA	TCGA-FD-A3SN-01A	HID1	chr17	72968686	-	SUMO2	chr17	73177283	-
intron-3CDS	ENST00000532900	ENST00000314523		TCGA	LD	BLCA	TCGA-FD-A3SN-01A	HID1	chr17	72968686	-	SUMO2	chr17	73177283	-
intron-5UTR	ENST00000532900	ENST00000578238		TCGA	LD	BLCA	TCGA-FD-A3SN-01A	HID1	chr17	72968686	-	SUMO2	chr17	73177283	-
intron-3CDS	ENST00000374706	ENST00000280772		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
intron-3CDS	ENST00000374706	ENST00000373827		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
intron-3CDS	ENST00000374706	ENST00000355288		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
intron-3CDS	ENST00000374706	ENST00000503366		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
intron-intron	ENST00000374706	ENST00000510382		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
intron-intron	ENST00000374706	ENST00000460468		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5UTR-3CDS	ENST00000265375	ENST00000280772		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5UTR-3CDS	ENST00000265375	ENST00000373827		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5UTR-3CDS	ENST00000265375	ENST00000355288		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5UTR-3CDS	ENST00000265375	ENST00000503366		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5UTR-intron	ENST00000265375	ENST00000510382		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5UTR-intron	ENST00000265375	ENST00000460468		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000339497	ENST00000280772		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000339497	ENST00000373827		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000339497	ENST00000355288		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000339497	ENST00000503366		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5CDS-intron	ENST00000339497	ENST00000510382		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5CDS-intron	ENST00000339497	ENST00000460468		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000374704	ENST00000280772		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000374704	ENST00000373827		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000374704	ENST00000355288		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
Frame-shit	ENST00000374704	ENST00000503366		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5CDS-intron	ENST00000374704	ENST00000510382		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5CDS-intron	ENST00000374704	ENST00000460468		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
3UTR-3CDS	ENST00000492478	ENST00000280772		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
3UTR-3CDS	ENST00000492478	ENST00000373827		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
3UTR-3CDS	ENST00000492478	ENST00000355288		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
3UTR-3CDS	ENST00000492478	ENST00000503366		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
3UTR-intron	ENST00000492478	ENST00000510382		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
3UTR-intron	ENST00000492478	ENST00000460468		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CCNY	chr10	35626135	+	ANK3	chr10	61874089	-
5CDS-5UTR	ENST00000439155	ENST00000535699		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000439155	ENST00000538660		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000439155	ENST00000367400		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000439155	ENST00000367399		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000439155	ENST00000543483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000439155	ENST00000544212		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000439155	ENST00000367397		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000439155	ENST00000476483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000367429	ENST00000535699		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000367429	ENST00000538660		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000367429	ENST00000367400		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000367429	ENST00000367399		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000367429	ENST00000543483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000367429	ENST00000544212		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000367429	ENST00000367397		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000367429	ENST00000476483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000496761	ENST00000535699		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000496761	ENST00000538660		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000496761	ENST00000367400		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000496761	ENST00000367399		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-intron	ENST00000496761	ENST00000543483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-intron	ENST00000496761	ENST00000544212		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-intron	ENST00000496761	ENST00000367397		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
intron-intron	ENST00000496761	ENST00000476483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000359637	ENST00000535699		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000359637	ENST00000538660		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000359637	ENST00000367400		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000359637	ENST00000367399		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000359637	ENST00000543483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000359637	ENST00000544212		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000359637	ENST00000367397		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000359637	ENST00000476483		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	CFH	chr1	196659369	+	CRB1	chr1	197297552	+
Frame-shit	ENST00000280886	ENST00000380191		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000280886	ENST00000479928		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000280886	ENST00000380132		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000280886	ENST00000380181		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
In-frame	ENST00000381496	ENST00000380191		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000381496	ENST00000479928		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000381496	ENST00000380132		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000381496	ENST00000380181		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
intron-3CDS	ENST00000540204	ENST00000380191		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
intron-intron	ENST00000540204	ENST00000479928		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
intron-intron	ENST00000540204	ENST00000380132		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
intron-intron	ENST00000540204	ENST00000380181		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	DIP2C	chr10	486811	-	GDI2	chr10	5842668	-
In-frame	ENST00000370321	ENST00000343253		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	RPL5	chr1	93300470	+	CCDC18	chr1	93657557	+
In-frame	ENST00000370321	ENST00000401026		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	RPL5	chr1	93300470	+	CCDC18	chr1	93657557	+
5CDS-5UTR	ENST00000370321	ENST00000338949		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	RPL5	chr1	93300470	+	CCDC18	chr1	93657557	+
5CDS-5UTR	ENST00000370321	ENST00000334652		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	RPL5	chr1	93300470	+	CCDC18	chr1	93657557	+
5CDS-5UTR	ENST00000370321	ENST00000557479		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	RPL5	chr1	93300470	+	CCDC18	chr1	93657557	+
5CDS-intron	ENST00000370321	ENST00000421014		TCGA	LD	BLCA	TCGA-FD-A3SP-01A	RPL5	chr1	93300470	+	CCDC18	chr1	93657557	+
3UTR-3CDS	ENST00000586746	ENST00000304239		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
3UTR-3CDS	ENST00000586746	ENST00000337995		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
3UTR-intron	ENST00000586746	ENST00000586540		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
3UTR-3CDS	ENST00000215587	ENST00000304239		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
3UTR-3CDS	ENST00000215587	ENST00000337995		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
3UTR-intron	ENST00000215587	ENST00000586540		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
5UTR-3CDS	ENST00000585838	ENST00000304239		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
5UTR-3CDS	ENST00000585838	ENST00000337995		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
5UTR-intron	ENST00000585838	ENST00000586540		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	POLR2E	chr19	1089471	-	ZNF420	chr19	37618030	+
3UTR-5UTR	ENST00000504604	ENST00000508632		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	RAPGEF2	chr4	160235920	+	OCIAD2	chr4	48906628	-
3UTR-5UTR	ENST00000504604	ENST00000508069		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	RAPGEF2	chr4	160235920	+	OCIAD2	chr4	48906628	-
3UTR-5UTR	ENST00000504604	ENST00000273860		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	RAPGEF2	chr4	160235920	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000264431	ENST00000508632		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	RAPGEF2	chr4	160235920	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000264431	ENST00000508069		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	RAPGEF2	chr4	160235920	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000264431	ENST00000273860		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	RAPGEF2	chr4	160235920	+	OCIAD2	chr4	48906628	-
5UTR-3UTR	ENST00000342944	ENST00000591727		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
5UTR-3UTR	ENST00000342944	ENST00000339133		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
5UTR-3UTR	ENST00000342944	ENST00000397555		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000339642	ENST00000591727		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000339642	ENST00000339133		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000339642	ENST00000397555		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000357002	ENST00000591727		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000357002	ENST00000339133		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000357002	ENST00000397555		TCGA	LD	BLCA	TCGA-FD-A3SR-01A	ZNF254	chr19	24229081	+	NANOS3	chr19	13991256	+
In-frame	ENST00000293604	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000293604	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000293604	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000293604	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
In-frame	ENST00000376473	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000376473	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000376473	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000376473	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000376471	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000376471	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000376471	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000376471	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000493705	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000493705	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000493705	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000493705	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
In-frame	ENST00000528347	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000528347	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000528347	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000528347	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000552569	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000552569	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000552569	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000552569	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000486177	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000486177	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000486177	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000486177	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000425581	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000425581	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000425581	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000425581	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000417649	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000417649	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000417649	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000417649	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000547308	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000547308	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000547308	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000547308	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000466518	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000466518	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000466518	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000466518	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000422530	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000422530	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000422530	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000422530	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000456444	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000456444	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000456444	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000456444	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000549800	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549800	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549800	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549800	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000472341	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000472341	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000472341	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000472341	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000430141	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000430141	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000430141	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000430141	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000455682	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000455682	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000455682	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000455682	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000549361	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549361	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549361	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549361	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000459700	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000459700	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000459700	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000459700	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000383581	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000383581	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000383581	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000383581	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000383580	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000383580	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000383580	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000383580	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000549861	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549861	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549861	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000549861	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000496234	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000496234	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000496234	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000496234	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000447505	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000447505	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000447505	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000447505	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000415931	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000415931	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000415931	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000415931	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000546452	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000546452	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000546452	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000546452	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000491140	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000491140	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000491140	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000491140	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000419321	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000419321	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000419321	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000419321	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000417076	ENST00000434459		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000417076	ENST00000477661		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000417076	ENST00000380872		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000417076	ENST00000380859		TCGA	LD	BLCA	TCGA-FD-A43N-01A	C6orf136	chr6	30617736	+	AKR1C1	chr10	5008106	+
5CDS-3UTR	ENST00000327892	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
5CDS-3UTR	ENST00000435534	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
5CDS-3UTR	ENST00000330914	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
5CDS-3UTR	ENST00000396389	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
5CDS-3UTR	ENST00000396384	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000421473	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000549614	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000413547	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000419551	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000454620	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000422674	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000548023	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000435546	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000420400	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000453350	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000419792	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000547690	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000436335	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000425136	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000444441	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000422650	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000547695	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000454454	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000412136	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000446385	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000383564	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000551208	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000400531	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000400534	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000400530	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000436628	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000549902	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000437490	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000426754	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000425102	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000432462	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000549654	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000427480	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000424734	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
intron-3UTR	ENST00000420618	ENST00000606723		TCGA	LD	BLCA	TCGA-FD-A43N-01A	TUBB	chr6	30690805	+	U91328.19	chr6	25993075	+
In-frame	ENST00000589222	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000589222	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000589222	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000589222	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000589222	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000589222	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000407086	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000407086	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000407086	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000407086	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000407086	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000390652	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000390652	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000390652	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000390652	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000390652	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000408905	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000408905	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000408905	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000408905	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000408905	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588462	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000588462	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000588462	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000588462	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000588462	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000585744	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000585744	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000585744	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000585744	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000585744	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000588874	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000588874	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000588874	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-intron	ENST00000588874	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
5CDS-5UTR	ENST00000588874	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000311275		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000360911		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000458360		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000262975		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000471951		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000352431		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000396281		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000446994		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000536340		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-3CDS	ENST00000585812	ENST00000355972		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-intron	ENST00000585812	ENST00000540497		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-intron	ENST00000585812	ENST00000461685		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-intron	ENST00000585812	ENST00000372023		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
intron-5UTR	ENST00000585812	ENST00000468376		TCGA	LD	BLCA	TCGA-FD-A43P-01A	BCAS3	chr17	59161925	+	ZMYND8	chr20	45891172	-
In-frame	ENST00000405204	ENST00000369037		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
Frame-shit	ENST00000405204	ENST00000453874		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000405204	ENST00000369031		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
In-frame	ENST00000443043	ENST00000369037		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
Frame-shit	ENST00000443043	ENST00000453874		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000443043	ENST00000369031		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
In-frame	ENST00000311381	ENST00000369037		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
Frame-shit	ENST00000311381	ENST00000453874		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000311381	ENST00000369031		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
3UTR-3CDS	ENST00000489790	ENST00000369037		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
3UTR-3CDS	ENST00000489790	ENST00000453874		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
3UTR-intron	ENST00000489790	ENST00000369031		TCGA	LD	BLCA	TCGA-FD-A43P-01A	C6orf203	chr6	107361434	+	PDSS2	chr6	107475981	-
In-frame	ENST00000261275	ENST00000333743		TCGA	LD	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29488634	-	GABRG3	chr15	27571956	+
In-frame	ENST00000261275	ENST00000555083		TCGA	LD	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29488634	-	GABRG3	chr15	27571956	+
5CDS-intron	ENST00000261275	ENST00000554786		TCGA	LD	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29488634	-	GABRG3	chr15	27571956	+
intron-3CDS	ENST00000560050	ENST00000333743		TCGA	LD	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29488634	-	GABRG3	chr15	27571956	+
intron-3CDS	ENST00000560050	ENST00000555083		TCGA	LD	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29488634	-	GABRG3	chr15	27571956	+
intron-intron	ENST00000560050	ENST00000554786		TCGA	LD	BLCA	TCGA-FD-A43P-01A	FAM189A1	chr15	29488634	-	GABRG3	chr15	27571956	+
5CDS-5UTR	ENST00000261712	ENST00000391419		TCGA	LD	BLCA	TCGA-FD-A43P-01A	PSMD11	chr17	30774064	+	KRTAP2-1	chr17	39203548	-
5CDS-intron	ENST00000261712	ENST00000542137		TCGA	LD	BLCA	TCGA-FD-A43P-01A	PSMD11	chr17	30774064	+	KRTAP2-1	chr17	39203548	-
5CDS-5UTR	ENST00000457654	ENST00000391419		TCGA	LD	BLCA	TCGA-FD-A43P-01A	PSMD11	chr17	30774064	+	KRTAP2-1	chr17	39203548	-
5CDS-intron	ENST00000457654	ENST00000542137		TCGA	LD	BLCA	TCGA-FD-A43P-01A	PSMD11	chr17	30774064	+	KRTAP2-1	chr17	39203548	-
In-frame	ENST00000582809	ENST00000394121		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000582809	ENST00000264637		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000582809	ENST00000584985		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000582809	ENST00000450525		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000582809	ENST00000546243		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
intron-3CDS	ENST00000577616	ENST00000394121		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
intron-3CDS	ENST00000577616	ENST00000264637		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
intron-3CDS	ENST00000577616	ENST00000584985		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
intron-3CDS	ENST00000577616	ENST00000450525		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
intron-3CDS	ENST00000577616	ENST00000546243		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000326270	ENST00000394121		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000326270	ENST00000264637		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000326270	ENST00000584985		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000326270	ENST00000450525		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000326270	ENST00000546243		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000346027	ENST00000394121		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000346027	ENST00000264637		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000346027	ENST00000584985		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000346027	ENST00000450525		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000346027	ENST00000546243		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000343388	ENST00000394121		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000343388	ENST00000264637		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000343388	ENST00000584985		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000343388	ENST00000450525		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000343388	ENST00000546243		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000542523	ENST00000394121		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000542523	ENST00000264637		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000542523	ENST00000584985		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000542523	ENST00000450525		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
In-frame	ENST00000542523	ENST00000546243		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TLK2	chr17	60613698	+	THRA	chr17	38240088	+
5UTR-5UTR	ENST00000301665	ENST00000378079		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TMEM99	chr17	38989451	+	FBXO47	chr17	37119304	-
intron-5UTR	ENST00000496847	ENST00000378079		TCGA	LD	BLCA	TCGA-FD-A43P-01A	TMEM99	chr17	38989451	+	FBXO47	chr17	37119304	-
3UTR-intron	ENST00000330317	ENST00000344691		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000325074		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000437180		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000300305		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000399240		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000486278		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000494829		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
3UTR-intron	ENST00000330317	ENST00000358356		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000344691		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000325074		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000437180		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000300305		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000399240		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000486278		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000494829		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000492742	ENST00000358356		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000344691		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000325074		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000437180		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000300305		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000399240		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000486278		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000494829		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
intron-intron	ENST00000398208	ENST00000358356		TCGA	LD	BLCA	TCGA-FD-A43X-01A	WDR4	chr21	44270151	-	RUNX1	chr21	37236765	-
5CDS-3UTR	ENST00000249923	ENST00000310358		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	COPB1	chr11	14504578	-	SPON1	chr11	14096892	+
5CDS-3UTR	ENST00000439561	ENST00000310358		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	COPB1	chr11	14504578	-	SPON1	chr11	14096892	+
intron-3UTR	ENST00000526191	ENST00000310358		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	COPB1	chr11	14504578	-	SPON1	chr11	14096892	+
Frame-shit	ENST00000522532	ENST00000287437		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000522532	ENST00000522563		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000522532	ENST00000517315		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000522532	ENST00000521460		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000276689	ENST00000287437		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000276689	ENST00000522563		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000276689	ENST00000517315		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000276689	ENST00000521460		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
In-frame	ENST00000518008	ENST00000287437		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
In-frame	ENST00000518008	ENST00000522563		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
In-frame	ENST00000518008	ENST00000517315		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000518008	ENST00000521460		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000517367	ENST00000287437		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000517367	ENST00000522563		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000517367	ENST00000517315		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000517367	ENST00000521460		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000517830	ENST00000287437		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000517830	ENST00000522563		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000517830	ENST00000517315		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
intron-intron	ENST00000517830	ENST00000521460		TCGA	LD	BLCA	TCGA-FD-A5BV-01A	NDUFB9	chr8	125559354	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000346798	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000354192	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000348990	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000357903	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000358918	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000359726	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000448388	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000440126	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000439274	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
intron-3CDS	ENST00000474136	ENST00000372330		TCGA	LD	BLCA	TCGA-FD-A5BX-01A	APP	chr21	27264034	-	MMP9	chr20	44643010	+
Frame-shit	ENST00000393445	ENST00000308528		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG1	chr2	99901283	-
Frame-shit	ENST00000393445	ENST00000409448		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG1	chr2	99901283	-
Frame-shit	ENST00000258428	ENST00000308528		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG1	chr2	99901283	-
Frame-shit	ENST00000258428	ENST00000409448		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG1	chr2	99901283	-
intron-3CDS	ENST00000465835	ENST00000308528		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG1	chr2	99901283	-
intron-3CDS	ENST00000465835	ENST00000409448		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG1	chr2	99901283	-
In-frame	ENST00000393445	ENST00000409238		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
In-frame	ENST00000393445	ENST00000333017		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
Frame-shit	ENST00000393445	ENST00000423800		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
In-frame	ENST00000393445	ENST00000409679		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
In-frame	ENST00000258428	ENST00000409238		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
In-frame	ENST00000258428	ENST00000333017		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
Frame-shit	ENST00000258428	ENST00000423800		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
In-frame	ENST00000258428	ENST00000409679		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
intron-3CDS	ENST00000465835	ENST00000409238		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
intron-3CDS	ENST00000465835	ENST00000333017		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
intron-3CDS	ENST00000465835	ENST00000423800		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
intron-3CDS	ENST00000465835	ENST00000409679		TCGA	LD	BLCA	TCGA-FD-A5BZ-01A	REV1	chr2	100078958	-	LYG2	chr2	99863283	-
5UTR-5UTR	ENST00000353801	ENST00000372014		TCGA	LD	BLCA	TCGA-FD-A62P-01A	HSP90AB1	chr6	44214932	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000371646	ENST00000372014		TCGA	LD	BLCA	TCGA-FD-A62P-01A	HSP90AB1	chr6	44214932	+	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000371554	ENST00000372014		TCGA	LD	BLCA	TCGA-FD-A62P-01A	HSP90AB1	chr6	44214932	+	MRPL14	chr6	44084366	-
5UTR-3UTR	ENST00000393799	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
3UTR-3UTR	ENST00000530427	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000393800	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000534534	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000524845	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000265637	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000524904	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000393801	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000265636	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3UTR	ENST00000529710	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
intron-3UTR	ENST00000527403	ENST00000451783		TCGA	LD	BLCA	TCGA-FD-A62S-01A	PPP6R3	chr11	68228295	+	CSN1S2AP	chr4	70944471	+
5UTR-3CDS	ENST00000278550	ENST00000531863		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5UTR-3CDS	ENST00000278550	ENST00000532677		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5UTR-3CDS	ENST00000278550	ENST00000453114		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5UTR-3CDS	ENST00000278550	ENST00000360510		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5UTR-3CDS	ENST00000278550	ENST00000541961		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5UTR-3CDS	ENST00000278550	ENST00000530165		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5UTR-intron	ENST00000278550	ENST00000533799		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533038	ENST00000531863		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533038	ENST00000532677		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533038	ENST00000453114		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533038	ENST00000360510		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533038	ENST00000541961		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533038	ENST00000530165		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
intron-intron	ENST00000533038	ENST00000533799		TCGA	LD	BLCA	TCGA-FD-A62S-01A	TENM4	chr11	79151553	-	DPP3	chr11	66276550	+
5CDS-5UTR	ENST00000372759	ENST00000539317		TCGA	LD	BLCA	TCGA-FD-A62S-01A	ZMPSTE24	chr1	40737707	+	SMAP2	chr1	40872408	+
5CDS-intron	ENST00000372759	ENST00000487871		TCGA	LD	BLCA	TCGA-FD-A62S-01A	ZMPSTE24	chr1	40737707	+	SMAP2	chr1	40872408	+
intron-5UTR	ENST00000479131	ENST00000539317		TCGA	LD	BLCA	TCGA-FD-A62S-01A	ZMPSTE24	chr1	40737707	+	SMAP2	chr1	40872408	+
intron-intron	ENST00000479131	ENST00000487871		TCGA	LD	BLCA	TCGA-FD-A62S-01A	ZMPSTE24	chr1	40737707	+	SMAP2	chr1	40872408	+
5UTR-3UTR	ENST00000447540	ENST00000413518		TCGA	LD	BLCA	TCGA-FD-A6TA-01A	CHD9	chr16	53088989	+	ERVK3-1	chr19	58817454	+
5UTR-3UTR	ENST00000566029	ENST00000413518		TCGA	LD	BLCA	TCGA-FD-A6TA-01A	CHD9	chr16	53088989	+	ERVK3-1	chr19	58817454	+
intron-3UTR	ENST00000564845	ENST00000413518		TCGA	LD	BLCA	TCGA-FD-A6TA-01A	CHD9	chr16	53088989	+	ERVK3-1	chr19	58817454	+
intron-3UTR	ENST00000398510	ENST00000413518		TCGA	LD	BLCA	TCGA-FD-A6TA-01A	CHD9	chr16	53088989	+	ERVK3-1	chr19	58817454	+
intron-3UTR	ENST00000564582	ENST00000413518		TCGA	LD	BLCA	TCGA-FD-A6TA-01A	CHD9	chr16	53088989	+	ERVK3-1	chr19	58817454	+
In-frame	ENST00000327087	ENST00000548411		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
In-frame	ENST00000327087	ENST00000281474		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000327087	ENST00000551848		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000327087	ENST00000550207		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000327087	ENST00000551086		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
In-frame	ENST00000546188	ENST00000548411		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
In-frame	ENST00000546188	ENST00000281474		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000546188	ENST00000551848		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000546188	ENST00000550207		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000546188	ENST00000551086		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
In-frame	ENST00000356134	ENST00000548411		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
In-frame	ENST00000356134	ENST00000281474		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000356134	ENST00000551848		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000356134	ENST00000550207		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5CDS-intron	ENST00000356134	ENST00000551086		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
intron-3CDS	ENST00000538154	ENST00000548411		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
intron-3CDS	ENST00000538154	ENST00000281474		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
intron-intron	ENST00000538154	ENST00000551848		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
intron-intron	ENST00000538154	ENST00000550207		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
intron-intron	ENST00000538154	ENST00000551086		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	ANO2	chr12	6030206	-	BICD1	chr12	32446928	+
5UTR-5UTR	ENST00000417689	ENST00000360461		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-intron	ENST00000417689	ENST00000427155		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-intron	ENST00000417689	ENST00000379344		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-intron	ENST00000417689	ENST00000450733		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-5UTR	ENST00000317091	ENST00000360461		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-intron	ENST00000317091	ENST00000427155		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-intron	ENST00000317091	ENST00000379344		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-intron	ENST00000317091	ENST00000450733		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968524	+	PLEKHG4	chr16	67311497	+
5UTR-3CDS	ENST00000417689	ENST00000299798		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968787	+	SLC9A5	chr16	67304687	+
5UTR-intron	ENST00000417689	ENST00000561472		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968787	+	SLC9A5	chr16	67304687	+
5UTR-3CDS	ENST00000317091	ENST00000299798		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968787	+	SLC9A5	chr16	67304687	+
5UTR-intron	ENST00000317091	ENST00000561472		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	CES2	chr16	66968787	+	SLC9A5	chr16	67304687	+
Frame-shit	ENST00000278780	ENST00000064571		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	OVOL2	chr20	18022178	-	CBLN4	chr20	54573810	-
5UTR-3CDS	ENST00000483661	ENST00000064571		TCGA	LD	BLCA	TCGA-FD-A6TC-01A	OVOL2	chr20	18022178	-	CBLN4	chr20	54573810	-
In-frame	ENST00000537344	ENST00000545643		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000537344	ENST00000537760		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000537344	ENST00000414023		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000537344	ENST00000529237		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000537344	ENST00000256196		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000537344	ENST00000534746		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000537344	ENST00000526063		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000537344	ENST00000532814		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000256194	ENST00000545643		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000256194	ENST00000537760		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000256194	ENST00000414023		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000256194	ENST00000529237		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000256194	ENST00000256196		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000256194	ENST00000534746		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000256194	ENST00000526063		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000256194	ENST00000532814		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000527546	ENST00000545643		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000527546	ENST00000537760		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000527546	ENST00000414023		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527546	ENST00000529237		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527546	ENST00000256196		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527546	ENST00000534746		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527546	ENST00000526063		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527546	ENST00000532814		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000342902	ENST00000545643		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000342902	ENST00000537760		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000342902	ENST00000414023		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000342902	ENST00000529237		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000342902	ENST00000256196		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000342902	ENST00000534746		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000342902	ENST00000526063		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000342902	ENST00000532814		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000379612	ENST00000545643		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000379612	ENST00000537760		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
In-frame	ENST00000379612	ENST00000414023		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000379612	ENST00000529237		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000379612	ENST00000256196		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000379612	ENST00000534746		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000379612	ENST00000526063		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000379612	ENST00000532814		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000527195	ENST00000545643		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000527195	ENST00000537760		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000527195	ENST00000414023		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000527195	ENST00000529237		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000527195	ENST00000256196		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000527195	ENST00000534746		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000527195	ENST00000526063		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000527195	ENST00000532814		TCGA	LD	BLCA	TCGA-FD-A6TD-01A	MICAL2	chr11	12261132	+	RRAS2	chr11	14317401	-
Frame-shit	ENST00000400590	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000400590	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000400590	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
Frame-shit	ENST00000320220	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000320220	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000320220	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
In-frame	ENST00000382466	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000382466	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000382466	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
Frame-shit	ENST00000542645	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000542645	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000542645	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
In-frame	ENST00000415724	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000415724	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5CDS-3UTR	ENST00000415724	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
intron-3CDS	ENST00000422251	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
intron-3UTR	ENST00000422251	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
intron-3UTR	ENST00000422251	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5UTR-3CDS	ENST00000494731	ENST00000366621		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5UTR-3UTR	ENST00000494731	ENST00000472190		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
5UTR-3UTR	ENST00000494731	ENST00000366620		TCGA	LD	BLCA	TCGA-FD-A6TF-01A	ZDHHC20	chr13	21965861	-	KCNK1	chr1	233802341	+
Frame-shit	ENST00000228825	ENST00000424586		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
Frame-shit	ENST00000228825	ENST00000585901		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
Frame-shit	ENST00000228825	ENST00000544690		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
Frame-shit	ENST00000228825	ENST00000262629		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
Frame-shit	ENST00000228825	ENST00000589517		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
5UTR-3CDS	ENST00000471641	ENST00000424586		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
5UTR-3CDS	ENST00000471641	ENST00000585901		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
5UTR-3CDS	ENST00000471641	ENST00000544690		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
5UTR-3CDS	ENST00000471641	ENST00000262629		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
5UTR-3CDS	ENST00000471641	ENST00000589517		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	ARPC3	chr12	110888060	-	TYROBP	chr19	36398482	-
5UTR-3CDS	ENST00000318584	ENST00000332707		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	FKRP	chr19	47251345	+	XPOT	chr12	64810478	+
5UTR-3CDS	ENST00000391909	ENST00000332707		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	FKRP	chr19	47251345	+	XPOT	chr12	64810478	+
3UTR-3CDS	ENST00000600646	ENST00000332707		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	FKRP	chr19	47251345	+	XPOT	chr12	64810478	+
Frame-shit	ENST00000448637	ENST00000318037		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	LPP	chr3	188327632	+	RNF168	chr3	196202183	-
Frame-shit	ENST00000312675	ENST00000318037		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	LPP	chr3	188327632	+	RNF168	chr3	196202183	-
Frame-shit	ENST00000543006	ENST00000318037		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	LPP	chr3	188327632	+	RNF168	chr3	196202183	-
3UTR-3CDS	ENST00000471917	ENST00000318037		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	LPP	chr3	188327632	+	RNF168	chr3	196202183	-
5CDS-intron	ENST00000561500	ENST00000348405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000513858		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000395310		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000443462		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000509142		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000326950		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000432794		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000311785		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000448323		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000505472		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000500777		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000508502		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-5UTR	ENST00000561500	ENST00000355196		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000264405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000505984		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000508479		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000561500	ENST00000436790		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000348405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000513858		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000395310		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000443462		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000509142		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000326950		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000432794		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000311785		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000448323		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000505472		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000500777		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000508502		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-5UTR	ENST00000379047	ENST00000355196		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000264405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000505984		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000508479		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379047	ENST00000436790		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000348405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000513858		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000395310		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000443462		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000509142		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000326950		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000432794		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000311785		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000448323		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000505472		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000500777		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000508502		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-5UTR	ENST00000320623	ENST00000355196		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000264405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000505984		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000508479		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000320623	ENST00000436790		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000348405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000513858		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000395310		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000443462		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000509142		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000326950		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000432794		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000311785		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000448323		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000505472		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000500777		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000508502		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-5UTR	ENST00000379046	ENST00000355196		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000264405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000505984		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000508479		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000379046	ENST00000436790		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000348405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000513858		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000395310		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000443462		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000509142		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000326950		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000432794		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000311785		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000448323		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000505472		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000500777		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000508502		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-5UTR	ENST00000439109	ENST00000355196		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000264405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000505984		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000508479		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
5CDS-intron	ENST00000439109	ENST00000436790		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000348405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000513858		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000395310		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000443462		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000509142		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000326950		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000432794		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000311785		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000448323		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000505472		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000500777		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000508502		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-5UTR	ENST00000564043	ENST00000355196		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000264405		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000505984		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000508479		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
intron-intron	ENST00000564043	ENST00000436790		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	NQO1	chr16	69760336	-	SEC31A	chr4	83821376	-
In-frame	ENST00000301244	ENST00000398016		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000301244	ENST00000359742		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000301244	ENST00000286445		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000301244	ENST00000542021		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000587090	ENST00000398016		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000587090	ENST00000359742		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000587090	ENST00000286445		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000587090	ENST00000542021		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000454580	ENST00000398016		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000454580	ENST00000359742		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000454580	ENST00000286445		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000454580	ENST00000542021		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	SPINT2	chr19	38781215	+	GRIP1	chr12	66935730	-
In-frame	ENST00000582809	ENST00000261233		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000582809	ENST00000545837		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000582809	ENST00000457197		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
intron-3CDS	ENST00000577616	ENST00000261233		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
intron-intron	ENST00000577616	ENST00000545837		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
intron-intron	ENST00000577616	ENST00000457197		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
In-frame	ENST00000326270	ENST00000261233		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000326270	ENST00000545837		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000326270	ENST00000457197		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
In-frame	ENST00000346027	ENST00000261233		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000346027	ENST00000545837		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000346027	ENST00000457197		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
In-frame	ENST00000343388	ENST00000261233		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000343388	ENST00000545837		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000343388	ENST00000457197		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
In-frame	ENST00000542523	ENST00000261233		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000542523	ENST00000545837		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
5CDS-intron	ENST00000542523	ENST00000457197		TCGA	LD	BLCA	TCGA-FD-A6TG-01A	TLK2	chr17	60679541	+	IRAK3	chr12	66620503	+
Frame-shit	ENST00000167462	ENST00000262325		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000167462	ENST00000592545		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000167462	ENST00000538556		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000167462	ENST00000312678		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000167462	ENST00000589344		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000167462	ENST00000537622		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
5CDS-3UTR	ENST00000167462	ENST00000545922		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000375227	ENST00000262325		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000375227	ENST00000592545		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000375227	ENST00000538556		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000375227	ENST00000312678		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000375227	ENST00000589344		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000375227	ENST00000537622		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3UTR	ENST00000375227	ENST00000545922		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000392550	ENST00000262325		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000392550	ENST00000592545		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000392550	ENST00000538556		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000392550	ENST00000312678		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000392550	ENST00000589344		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000392550	ENST00000537622		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
5CDS-3UTR	ENST00000392550	ENST00000545922		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000578363	ENST00000262325		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000578363	ENST00000592545		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000578363	ENST00000538556		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000578363	ENST00000312678		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000578363	ENST00000589344		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3CDS	ENST00000578363	ENST00000537622		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
intron-3UTR	ENST00000578363	ENST00000545922		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000577200	ENST00000262325		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000577200	ENST00000592545		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000577200	ENST00000538556		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000577200	ENST00000312678		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000577200	ENST00000589344		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
Frame-shit	ENST00000577200	ENST00000537622		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
5CDS-3UTR	ENST00000577200	ENST00000545922		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	LLGL2	chr17	73569712	+	AP2B1	chr17	34036243	+
5CDS-5UTR	ENST00000320095	ENST00000579991		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	METRNL	chr17	81043199	+	DYNLL2	chr17	56164443	+
5CDS-5UTR	ENST00000570778	ENST00000579991		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	METRNL	chr17	81043199	+	DYNLL2	chr17	56164443	+
5CDS-5UTR	ENST00000571814	ENST00000579991		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	METRNL	chr17	81043199	+	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000571940	ENST00000579991		TCGA	LD	BLCA	TCGA-FD-A6TH-01A	METRNL	chr17	81043199	+	DYNLL2	chr17	56164443	+
In-frame	ENST00000368533	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368533	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368533	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368533	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000368533	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-intron	ENST00000469717	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000330188	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000341485	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000341372	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000328159	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000271850	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000302206	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000368531	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000323144	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000392302		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000368196		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000524377		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000358660		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000368530	ENST00000531606		TCGA	LD	BLCA	TCGA-FD-A6TI-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000221452	ENST00000421905		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000221452	ENST00000221462		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
5CDS-intron	ENST00000221452	ENST00000496125		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
Frame-shit	ENST00000540120	ENST00000421905		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
Frame-shit	ENST00000540120	ENST00000221462		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
5CDS-intron	ENST00000540120	ENST00000496125		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000505236	ENST00000421905		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000505236	ENST00000221462		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
5CDS-intron	ENST00000505236	ENST00000496125		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RELB	chr19	45506254	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000296292	ENST00000233027		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RFT1	chr3	53164354	-	NEK4	chr3	52775515	-
In-frame	ENST00000296292	ENST00000535191		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RFT1	chr3	53164354	-	NEK4	chr3	52775515	-
In-frame	ENST00000296292	ENST00000383721		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RFT1	chr3	53164354	-	NEK4	chr3	52775515	-
In-frame	ENST00000394738	ENST00000233027		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RFT1	chr3	53164354	-	NEK4	chr3	52775515	-
In-frame	ENST00000394738	ENST00000535191		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RFT1	chr3	53164354	-	NEK4	chr3	52775515	-
In-frame	ENST00000394738	ENST00000383721		TCGA	LD	BLCA	TCGA-FD-A6TK-01A	RFT1	chr3	53164354	-	NEK4	chr3	52775515	-
intron-3CDS	ENST00000384869	ENST00000244926		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	MIR611	chr11	61560028	-	SCGB1D2	chr11	62010761	+
In-frame	ENST00000367661	ENST00000598742		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000367661	ENST00000221975		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000367661	ENST00000593863		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
In-frame	ENST00000367662	ENST00000598742		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000367662	ENST00000221975		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000367662	ENST00000593863		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
intron-3CDS	ENST00000486075	ENST00000598742		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000486075	ENST00000221975		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000486075	ENST00000593863		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	PAPPA2	chr1	176640251	+	RPS19	chr19	42373101	+
In-frame	ENST00000373795	ENST00000396299		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000373795	ENST00000357727		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000373795	ENST00000396300		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000373795	ENST00000409603		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000373795	ENST00000396298		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5CDS-intron	ENST00000373795	ENST00000482692		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000546138	ENST00000396299		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000546138	ENST00000357727		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000546138	ENST00000396300		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000546138	ENST00000409603		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
In-frame	ENST00000546138	ENST00000396298		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5CDS-intron	ENST00000546138	ENST00000482692		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5UTR-3CDS	ENST00000466448	ENST00000396299		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5UTR-3CDS	ENST00000466448	ENST00000357727		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5UTR-3CDS	ENST00000466448	ENST00000396300		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5UTR-3CDS	ENST00000466448	ENST00000409603		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5UTR-3CDS	ENST00000466448	ENST00000396298		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
5UTR-intron	ENST00000466448	ENST00000482692		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	SRSF4	chr1	29508158	-	CREB5	chr7	28843816	+
intron-3CDS	ENST00000535042	ENST00000244926		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	TMEM258	chr11	61560028	-	SCGB1D2	chr11	62010761	+
Frame-shit	ENST00000537328	ENST00000244926		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	TMEM258	chr11	61560028	-	SCGB1D2	chr11	62010761	+
intron-3CDS	ENST00000543510	ENST00000244926		TCGA	LD	BLCA	TCGA-FJ-A3Z7-01A	TMEM258	chr11	61560028	-	SCGB1D2	chr11	62010761	+
intron-3UTR	ENST00000302979	ENST00000491455		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
intron-3UTR	ENST00000302979	ENST00000415093		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
intron-3UTR	ENST00000302979	ENST00000366957		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
5CDS-3UTR	ENST00000399697	ENST00000491455		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
5CDS-3UTR	ENST00000399697	ENST00000415093		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
5CDS-3UTR	ENST00000399697	ENST00000366957		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
3UTR-3UTR	ENST00000465887	ENST00000491455		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
3UTR-3UTR	ENST00000465887	ENST00000415093		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
3UTR-3UTR	ENST00000465887	ENST00000366957		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
intron-3UTR	ENST00000399696	ENST00000491455		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
intron-3UTR	ENST00000399696	ENST00000415093		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
intron-3UTR	ENST00000399696	ENST00000366957		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	POLR1D	chr13	28222590	+	SMYD2	chr1	214510047	+
Frame-shit	ENST00000366835	ENST00000367972		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
In-frame	ENST00000366835	ENST00000271450		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
5CDS-3UTR	ENST00000366835	ENST00000486608		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
intron-3CDS	ENST00000474478	ENST00000367972		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
intron-3CDS	ENST00000474478	ENST00000271450		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
intron-3UTR	ENST00000474478	ENST00000486608		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
intron-3CDS	ENST00000537914	ENST00000367972		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
intron-3CDS	ENST00000537914	ENST00000271450		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
intron-3UTR	ENST00000537914	ENST00000486608		TCGA	LD	BLCA	TCGA-FJ-A3ZE-01A	TMEM63A	chr1	226059687	-	FCGR2A	chr1	161487765	+
5CDS-5UTR	ENST00000318289	ENST00000486869		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	TSTD1	chr1	161008670	-	GBAP1	chr1	155187164	-
5CDS-5UTR	ENST00000368023	ENST00000486869		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	TSTD1	chr1	161008670	-	GBAP1	chr1	155187164	-
5CDS-5UTR	ENST00000368024	ENST00000486869		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	TSTD1	chr1	161008670	-	GBAP1	chr1	155187164	-
5CDS-5UTR	ENST00000423014	ENST00000486869		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	TSTD1	chr1	161008670	-	GBAP1	chr1	155187164	-
intron-5UTR	ENST00000466967	ENST00000486869		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	TSTD1	chr1	161008670	-	GBAP1	chr1	155187164	-
5CDS-3UTR	ENST00000207549	ENST00000293217		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-3UTR	ENST00000207549	ENST00000537812		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-intron	ENST00000207549	ENST00000301608		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-intron	ENST00000207549	ENST00000591857		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-3UTR	ENST00000412096	ENST00000293217		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-3UTR	ENST00000412096	ENST00000537812		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-intron	ENST00000412096	ENST00000301608		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-intron	ENST00000412096	ENST00000591857		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
intron-3UTR	ENST00000587504	ENST00000293217		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
intron-3UTR	ENST00000587504	ENST00000537812		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
intron-intron	ENST00000587504	ENST00000301608		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
intron-intron	ENST00000587504	ENST00000591857		TCGA	LD	BLCA	TCGA-FJ-A3ZF-01A	UNC13D	chr17	73831490	-	ACOX1	chr17	73939294	-
5CDS-intron	ENST00000580900	ENST00000379992		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-5UTR	ENST00000580900	ENST00000493941		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-intron	ENST00000580900	ENST00000308675		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-intron	ENST00000380172	ENST00000379992		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-5UTR	ENST00000380172	ENST00000493941		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-intron	ENST00000380172	ENST00000308675		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-intron	ENST00000460874	ENST00000379992		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-5UTR	ENST00000460874	ENST00000493941		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
5CDS-intron	ENST00000460874	ENST00000308675		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
intron-intron	ENST00000427788	ENST00000379992		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
intron-5UTR	ENST00000427788	ENST00000493941		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
intron-intron	ENST00000427788	ENST00000308675		TCGA	LD	BLCA	TCGA-FJ-A871-01A	MTAP	chr9	21838009	+	LINGO2	chr9	28080976	-
Frame-shit	ENST00000287263	ENST00000399881		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
5CDS-intron	ENST00000287263	ENST00000518904		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
Frame-shit	ENST00000330843	ENST00000399881		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
5CDS-intron	ENST00000330843	ENST00000518904		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-3CDS	ENST00000522727	ENST00000399881		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-intron	ENST00000522727	ENST00000518904		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-3CDS	ENST00000523182	ENST00000399881		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-intron	ENST00000523182	ENST00000518904		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-3CDS	ENST00000524118	ENST00000399881		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-intron	ENST00000524118	ENST00000518904		TCGA	LD	BLCA	TCGA-FT-A3EE-01A	RAB11FIP1	chr8	37756589	-	KCNU1	chr8	36763226	+
intron-3CDS	ENST00000446326	ENST00000268704		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-intron	ENST00000446326	ENST00000341316		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-intron	ENST00000446326	ENST00000565891		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
3UTR-3CDS	ENST00000289816	ENST00000268704		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
3UTR-intron	ENST00000289816	ENST00000341316		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
3UTR-intron	ENST00000289816	ENST00000565891		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-3CDS	ENST00000568064	ENST00000268704		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-intron	ENST00000568064	ENST00000341316		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-intron	ENST00000568064	ENST00000565891		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-3CDS	ENST00000443381	ENST00000268704		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-intron	ENST00000443381	ENST00000341316		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
intron-intron	ENST00000443381	ENST00000565891		TCGA	LD	BLCA	TCGA-G2-A2EC-01A	ZNF276	chr16	89805703	+	SPG7	chr16	89613066	+
Frame-shit	ENST00000441576	ENST00000265563		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000441576	ENST00000454963		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000441576	ENST00000296446		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000341949	ENST00000265563		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000341949	ENST00000454963		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000341949	ENST00000296446		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000395462	ENST00000265563		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000395462	ENST00000454963		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000395462	ENST00000296446		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000440857	ENST00000265563		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000440857	ENST00000454963		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000440857	ENST00000296446		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000313778	ENST00000265563		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000313778	ENST00000454963		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
Frame-shit	ENST00000313778	ENST00000296446		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
intron-3CDS	ENST00000496568	ENST00000265563		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
intron-3CDS	ENST00000496568	ENST00000454963		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
intron-3CDS	ENST00000496568	ENST00000296446		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	DALRD3	chr3	49054207	-	PRKAR2A	chr3	48789750	-
5UTR-3CDS	ENST00000535742	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000535742	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000535742	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000535742	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-intron	ENST00000535742	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000546025	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000546025	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000546025	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000546025	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-intron	ENST00000546025	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000345254	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000345254	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000345254	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000345254	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-intron	ENST00000345254	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000540668	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000540668	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000540668	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000540668	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-intron	ENST00000540668	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000339365	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000339365	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000339365	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000339365	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-intron	ENST00000339365	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000411652	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000411652	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000411652	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000411652	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5UTR-intron	ENST00000411652	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
intron-3CDS	ENST00000496827	ENST00000539909		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
intron-3CDS	ENST00000496827	ENST00000286621		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
intron-3CDS	ENST00000496827	ENST00000372734		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
intron-3CDS	ENST00000496827	ENST00000541550		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
intron-intron	ENST00000496827	ENST00000467840		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SEC24C	chr10	75504195	+	ADK	chr10	76429941	+
5CDS-5UTR	ENST00000356388	ENST00000494188		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000409892		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000409784		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000398529		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000409751		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000260638		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000356214		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000494188		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000409892		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000409784		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000398529		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000409751		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000260638		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000356214		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000494188		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000409892		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000409784		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000398529		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000409751		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000260638		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000356214		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-intron	ENST00000461188	ENST00000382369		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	270317	-
intron-intron	ENST00000461188	ENST00000360321		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	270317	-
intron-intron	ENST00000461188	ENST00000400269		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	270317	-
5CDS-intron	ENST00000354200	ENST00000382369		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	270317	-
5CDS-intron	ENST00000354200	ENST00000360321		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	270317	-
5CDS-intron	ENST00000354200	ENST00000400269		TCGA	LD	BLCA	TCGA-G2-A2EF-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	270317	-
Frame-shit	ENST00000373566	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000373566	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
Frame-shit	ENST00000373563	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000373563	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
Frame-shit	ENST00000409480	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000409480	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
Frame-shit	ENST00000409547	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000409547	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
Frame-shit	ENST00000409196	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000409196	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
Frame-shit	ENST00000409451	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000409451	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
3UTR-3CDS	ENST00000482666	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
3UTR-intron	ENST00000482666	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
intron-3CDS	ENST00000452341	ENST00000389758		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
intron-intron	ENST00000452341	ENST00000480634		TCGA	LD	BLCA	TCGA-G2-A2EL-01A	GIGYF2	chr2	233599948	+	MROH2A	chr2	234719440	+
5CDS-intron	ENST00000357668	ENST00000306185		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	ASAP1	chr8	131226802	-	MRPL13	chr8	121393413	-
5CDS-intron	ENST00000518721	ENST00000306185		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	ASAP1	chr8	131226802	-	MRPL13	chr8	121393413	-
intron-intron	ENST00000520625	ENST00000306185		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	ASAP1	chr8	131226802	-	MRPL13	chr8	121393413	-
5CDS-3UTR	ENST00000263398	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000263398	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000263398	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000263398	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-3UTR	ENST00000526025	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000526025	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000526025	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-intron	ENST00000526025	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000449691	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000449691	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000449691	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000449691	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000360158	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000360158	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000360158	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000360158	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000415148	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000415148	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000415148	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000415148	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000437706	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000437706	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000437706	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000437706	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000433354	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000433354	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000433354	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000433354	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000428726	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000428726	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000428726	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000428726	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-3UTR	ENST00000526669	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000526669	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000526669	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-intron	ENST00000526669	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000433892	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000433892	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000433892	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000433892	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-3UTR	ENST00000278386	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000278386	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000278386	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-intron	ENST00000278386	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000434472	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000434472	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000434472	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000434472	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-3UTR	ENST00000352818	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000352818	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-5UTR	ENST00000352818	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5CDS-intron	ENST00000352818	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-3UTR	ENST00000528922	ENST00000398294		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000528922	ENST00000531515		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-5UTR	ENST00000528922	ENST00000534224		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
intron-intron	ENST00000528922	ENST00000527447		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	CD44	chr11	35211612	+	CREBZF	chr11	85371641	-
5UTR-intron	ENST00000379509	ENST00000474610		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	LCLAT1	chr2	30670249	+	MYADML	chr2	33948580	-
5UTR-intron	ENST00000319406	ENST00000474610		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	LCLAT1	chr2	30670249	+	MYADML	chr2	33948580	-
3UTR-intron	ENST00000491680	ENST00000474610		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	LCLAT1	chr2	30670249	+	MYADML	chr2	33948580	-
5UTR-intron	ENST00000359433	ENST00000474610		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	LCLAT1	chr2	30670249	+	MYADML	chr2	33948580	-
5UTR-intron	ENST00000309052	ENST00000474610		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	LCLAT1	chr2	30670249	+	MYADML	chr2	33948580	-
5UTR-intron	ENST00000540623	ENST00000474610		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	LCLAT1	chr2	30670249	+	MYADML	chr2	33948580	-
5CDS-intron	ENST00000311713	ENST00000384756		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000364799		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000384693		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000383926		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000516331		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000384706		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000363981		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000384147		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000311713	ENST00000365607		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000384756		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000364799		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000384693		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000383926		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000516331		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000384706		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000363981		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000384147		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000278856	ENST00000365607		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000384756		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000364799		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000384693		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000383926		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000516331		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000384706		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000363981		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000384147		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000529106	ENST00000365607		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000384756		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000364799		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000384693		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000383926		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000516331		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000384706		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000363981		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000384147		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525239	ENST00000365607		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000384756		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000364799		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000384693		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000383926		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000516331		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000384706		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000363981		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000384147		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000525752	ENST00000365607		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000384756		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000364799		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000384693		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000383926		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000516331		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000384706		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000363981		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000384147		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-intron	ENST00000540620	ENST00000365607		TCGA	LD	BLCA	TCGA-G2-A2EO-01A	WDR74	chr11	62602903	-	SNHG1	chr11	62620311	-
5UTR-3CDS	ENST00000356093	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000356093	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000356093	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3UTR	ENST00000356093	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000398863	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000398863	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000398863	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3UTR	ENST00000398863	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000343067	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000343067	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000343067	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3UTR	ENST00000343067	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000349460	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000349460	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000349460	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3UTR	ENST00000349460	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000373800	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000373800	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000373800	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3UTR	ENST00000373800	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000347529	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000347529	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3CDS	ENST00000347529	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
5UTR-3UTR	ENST00000347529	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000373798	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000373798	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000373798	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3UTR	ENST00000373798	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000373797	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000373797	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000373797	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3UTR	ENST00000373797	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000460378	ENST00000373816		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000460378	ENST00000361872		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3CDS	ENST00000460378	ENST00000294409		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
intron-3UTR	ENST00000460378	ENST00000480454		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	EPB41	chr1	29213722	+	GMEB1	chr1	29016616	+
3UTR-3CDS	ENST00000493862	ENST00000215909		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	NOL12	chr22	38084999	+	LGALS1	chr22	38072993	+
3UTR-3UTR	ENST00000493862	ENST00000489315		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	NOL12	chr22	38084999	+	LGALS1	chr22	38072993	+
In-frame	ENST00000359114	ENST00000215909		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	NOL12	chr22	38084999	+	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000359114	ENST00000489315		TCGA	LD	BLCA	TCGA-G2-A2ES-01A	NOL12	chr22	38084999	+	LGALS1	chr22	38072993	+
5CDS-intron	ENST00000229329	ENST00000363840		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5CDS-intron	ENST00000229329	ENST00000365524		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5CDS-intron	ENST00000229329	ENST00000364822		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5CDS-intron	ENST00000229329	ENST00000363859		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5CDS-intron	ENST00000229329	ENST00000385578		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5CDS-intron	ENST00000229329	ENST00000363146		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5CDS-intron	ENST00000229329	ENST00000364084		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	CMAS	chr12	22215368	+	GAS5	chr1	173833442	-
5UTR-3CDS	ENST00000366978	ENST00000358794		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000366978	ENST00000305218		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000366978	ENST00000538945		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000366978	ENST00000543847		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3UTR	ENST00000366978	ENST00000540501		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366977	ENST00000358794		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366977	ENST00000305218		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366977	ENST00000538945		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366977	ENST00000543847		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5CDS-3UTR	ENST00000366977	ENST00000540501		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000422588	ENST00000358794		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000422588	ENST00000305218		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000422588	ENST00000538945		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000422588	ENST00000543847		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5CDS-3UTR	ENST00000422588	ENST00000540501		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366975	ENST00000358794		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366975	ENST00000305218		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366975	ENST00000538945		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366975	ENST00000543847		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5CDS-3UTR	ENST00000366975	ENST00000540501		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366976	ENST00000358794		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366976	ENST00000305218		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366976	ENST00000538945		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
In-frame	ENST00000366976	ENST00000543847		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5CDS-3UTR	ENST00000366976	ENST00000540501		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000473995	ENST00000358794		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000473995	ENST00000305218		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000473995	ENST00000538945		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000473995	ENST00000543847		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
5UTR-3UTR	ENST00000473995	ENST00000540501		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	NSL1	chr1	212964872	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000358794	ENST00000366978		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000358794	ENST00000366977		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000358794	ENST00000422588		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000358794	ENST00000366975		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000358794	ENST00000366976		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-5UTR	ENST00000358794	ENST00000473995		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000305218	ENST00000366978		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000305218	ENST00000366977		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000305218	ENST00000422588		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000305218	ENST00000366975		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000305218	ENST00000366976		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
5CDS-5UTR	ENST00000305218	ENST00000473995		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000538945	ENST00000366978		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000538945	ENST00000366977		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000538945	ENST00000422588		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000538945	ENST00000366975		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000538945	ENST00000366976		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
5CDS-5UTR	ENST00000538945	ENST00000473995		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000543847	ENST00000366978		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000543847	ENST00000366977		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000543847	ENST00000422588		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000543847	ENST00000366975		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
Frame-shit	ENST00000543847	ENST00000366976		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
5CDS-5UTR	ENST00000543847	ENST00000473995		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000540501	ENST00000366978		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000540501	ENST00000366977		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000540501	ENST00000422588		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000540501	ENST00000366975		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-3CDS	ENST00000540501	ENST00000366976		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
intron-5UTR	ENST00000540501	ENST00000473995		TCGA	LD	BLCA	TCGA-G2-A3IB-01A	STIP1	chr11	63953742	+	NSL1	chr1	212957835	-
In-frame	ENST00000310351	ENST00000317799		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000310351	ENST00000405867		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000310351	ENST00000537713		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000310351	ENST00000545822		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
5CDS-3UTR	ENST00000310351	ENST00000494615		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000488653	ENST00000317799		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000488653	ENST00000405867		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000488653	ENST00000537713		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000488653	ENST00000545822		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
5CDS-3UTR	ENST00000488653	ENST00000494615		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000485727	ENST00000317799		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000485727	ENST00000405867		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000485727	ENST00000537713		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000485727	ENST00000545822		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
5CDS-3UTR	ENST00000485727	ENST00000494615		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
Frame-shit	ENST00000489746	ENST00000317799		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
Frame-shit	ENST00000489746	ENST00000405867		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
Frame-shit	ENST00000489746	ENST00000537713		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
Frame-shit	ENST00000489746	ENST00000545822		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
5CDS-3UTR	ENST00000489746	ENST00000494615		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000433542	ENST00000317799		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000433542	ENST00000405867		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000433542	ENST00000537713		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
In-frame	ENST00000433542	ENST00000545822		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
5CDS-3UTR	ENST00000433542	ENST00000494615		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
intron-3CDS	ENST00000483247	ENST00000317799		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
intron-3CDS	ENST00000483247	ENST00000405867		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
intron-3CDS	ENST00000483247	ENST00000537713		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
intron-3CDS	ENST00000483247	ENST00000545822		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
intron-3UTR	ENST00000483247	ENST00000494615		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	CCDC14	chr3	123652520	-	HADHB	chr2	26502862	+
Frame-shit	ENST00000381271	ENST00000081029		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	KLHL42	chr12	27934135	+	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000381271	ENST00000538315		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	KLHL42	chr12	27934135	+	MRPS35	chr12	27908114	+
5CDS-5UTR	ENST00000369426	ENST00000445937		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000369426	ENST00000531443		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000369426	ENST00000517566		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000369426	ENST00000452423		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000442977		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000521963		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000312046		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000449762		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000297447		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000521592		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000369426	ENST00000497705		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000235521	ENST00000445937		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000235521	ENST00000531443		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000235521	ENST00000517566		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000235521	ENST00000452423		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000442977		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000521963		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000312046		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000449762		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000297447		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000521592		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5CDS-intron	ENST00000235521	ENST00000497705		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-5UTR	ENST00000537870	ENST00000445937		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-5UTR	ENST00000537870	ENST00000531443		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-5UTR	ENST00000537870	ENST00000517566		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-5UTR	ENST00000537870	ENST00000452423		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000442977		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000521963		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000312046		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000449762		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000297447		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000521592		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
intron-intron	ENST00000537870	ENST00000497705		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000497761	ENST00000445937		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000497761	ENST00000531443		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000497761	ENST00000517566		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000497761	ENST00000452423		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000442977		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000521963		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000312046		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000449762		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000297447		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000521592		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
5UTR-intron	ENST00000497761	ENST00000497705		TCGA	LD	BLCA	TCGA-G2-A3IE-01A	WARS2	chr1	119683178	-	OXR1	chr8	107371704	+
Frame-shit	ENST00000366603	ENST00000366628		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
5CDS-intron	ENST00000366603	ENST00000366627		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
5CDS-3UTR	ENST00000366603	ENST00000490098		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
Frame-shit	ENST00000264183	ENST00000366628		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
5CDS-intron	ENST00000264183	ENST00000366627		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
5CDS-3UTR	ENST00000264183	ENST00000490098		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
Frame-shit	ENST00000349213	ENST00000366628		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
5CDS-intron	ENST00000349213	ENST00000366627		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
5CDS-3UTR	ENST00000349213	ENST00000490098		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
intron-3CDS	ENST00000494543	ENST00000366628		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
intron-intron	ENST00000494543	ENST00000366627		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
intron-3UTR	ENST00000494543	ENST00000490098		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ARID4B	chr1	235409735	-	NTPCR	chr1	233113909	+
In-frame	ENST00000394532	ENST00000255681		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
5CDS-5UTR	ENST00000394532	ENST00000538595		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
Frame-shit	ENST00000309032	ENST00000255681		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
5CDS-5UTR	ENST00000309032	ENST00000538595		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
In-frame	ENST00000544785	ENST00000255681		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
5CDS-5UTR	ENST00000544785	ENST00000538595		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
In-frame	ENST00000394531	ENST00000255681		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
5CDS-5UTR	ENST00000394531	ENST00000538595		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	BAD	chr11	64051654	-	MACROD1	chr11	63919865	-
In-frame	ENST00000527884	ENST00000265968		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	E2F8	chr11	19261654	-	CSRP3	chr11	19223586	-
5CDS-5UTR	ENST00000527884	ENST00000533783		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	E2F8	chr11	19261654	-	CSRP3	chr11	19223586	-
Frame-shit	ENST00000250024	ENST00000265968		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	E2F8	chr11	19261654	-	CSRP3	chr11	19223586	-
5CDS-5UTR	ENST00000250024	ENST00000533783		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	E2F8	chr11	19261654	-	CSRP3	chr11	19223586	-
intron-3CDS	ENST00000529188	ENST00000265968		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	E2F8	chr11	19261654	-	CSRP3	chr11	19223586	-
intron-5UTR	ENST00000529188	ENST00000533783		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	E2F8	chr11	19261654	-	CSRP3	chr11	19223586	-
In-frame	ENST00000359523	ENST00000367854		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
Frame-shit	ENST00000359523	ENST00000537350		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
5CDS-intron	ENST00000359523	ENST00000472038		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
In-frame	ENST00000392121	ENST00000367854		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
Frame-shit	ENST00000392121	ENST00000537350		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
5CDS-intron	ENST00000392121	ENST00000472038		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
In-frame	ENST00000474859	ENST00000367854		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
Frame-shit	ENST00000474859	ENST00000537350		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
5CDS-intron	ENST00000474859	ENST00000472038		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
intron-3CDS	ENST00000403379	ENST00000367854		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
intron-3CDS	ENST00000403379	ENST00000537350		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
intron-intron	ENST00000403379	ENST00000472038		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	MPZL1	chr1	167691479	+	RCSD1	chr1	167673901	+
Frame-shit	ENST00000261396	ENST00000514738		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
Frame-shit	ENST00000261396	ENST00000265071		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
Frame-shit	ENST00000537506	ENST00000514738		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
Frame-shit	ENST00000537506	ENST00000265071		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
intron-3CDS	ENST00000366678	ENST00000514738		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
intron-3CDS	ENST00000366678	ENST00000265071		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
intron-3CDS	ENST00000485119	ENST00000514738		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
intron-3CDS	ENST00000485119	ENST00000265071		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	NUP133	chr1	229625702	-	CDH6	chr5	31299571	+
Frame-shit	ENST00000367879	ENST00000361951		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000367879	ENST00000239457		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000367879	ENST00000471476		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
Frame-shit	ENST00000372212	ENST00000361951		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000372212	ENST00000239457		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000372212	ENST00000471476		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000462329	ENST00000361951		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000462329	ENST00000239457		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-intron	ENST00000462329	ENST00000471476		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000469256	ENST00000361951		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000469256	ENST00000239457		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-intron	ENST00000469256	ENST00000471476		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000470820	ENST00000361951		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000470820	ENST00000239457		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
intron-intron	ENST00000470820	ENST00000471476		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	UCK2	chr1	165797169	+	DARS2	chr1	173795825	+
Frame-shit	ENST00000265107	ENST00000382722		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000265107	ENST00000587995		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000265107	ENST00000588077		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000265107	ENST00000586184		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000265107	ENST00000585708		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000265107	ENST00000585732		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-intron	ENST00000265107	ENST00000539048		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-intron	ENST00000265107	ENST00000538450		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-intron	ENST00000265107	ENST00000538027		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000504564	ENST00000382722		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000504564	ENST00000587995		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000504564	ENST00000588077		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000504564	ENST00000586184		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000504564	ENST00000585708		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
Frame-shit	ENST00000504564	ENST00000585732		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-intron	ENST00000504564	ENST00000539048		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-intron	ENST00000504564	ENST00000538450		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-intron	ENST00000504564	ENST00000538027		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-3CDS	ENST00000510699	ENST00000382722		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-3CDS	ENST00000510699	ENST00000587995		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-3CDS	ENST00000510699	ENST00000588077		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-3CDS	ENST00000510699	ENST00000586184		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-3CDS	ENST00000510699	ENST00000585708		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-3CDS	ENST00000510699	ENST00000585732		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-intron	ENST00000510699	ENST00000539048		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-intron	ENST00000510699	ENST00000538450		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
3UTR-intron	ENST00000510699	ENST00000538027		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDR70	chr5	37516692	+	CACNA2D4	chr12	2019131	-
5CDS-5UTR	ENST00000359774	ENST00000310454		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000359774	ENST00000409125		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000359774	ENST00000438166		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000359774	ENST00000540309		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000359774	ENST00000409674		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-intron	ENST00000359774	ENST00000496190		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000358147	ENST00000310454		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000358147	ENST00000409125		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000358147	ENST00000438166		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000358147	ENST00000540309		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000358147	ENST00000409674		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-intron	ENST00000358147	ENST00000496190		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000392796	ENST00000310454		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000392796	ENST00000409125		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000392796	ENST00000438166		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000392796	ENST00000540309		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000392796	ENST00000409674		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-intron	ENST00000392796	ENST00000496190		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000409990	ENST00000310454		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000409990	ENST00000409125		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000409990	ENST00000438166		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000409990	ENST00000540309		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-5UTR	ENST00000409990	ENST00000409674		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
5CDS-intron	ENST00000409990	ENST00000496190		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000409124	ENST00000310454		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000409124	ENST00000409125		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000409124	ENST00000438166		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000409124	ENST00000540309		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000409124	ENST00000409674		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
intron-intron	ENST00000409124	ENST00000496190		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	WDSUB1	chr2	160104883	-	GPD2	chr2	157332610	+
In-frame	ENST00000439326	ENST00000421999		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ZNF844	chr19	12184972	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000439326	ENST00000496116		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ZNF844	chr19	12184972	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000439326	ENST00000489081		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ZNF844	chr19	12184972	+	CMSS1	chr3	99865817	+
In-frame	ENST00000441304	ENST00000421999		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ZNF844	chr19	12184972	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000441304	ENST00000496116		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ZNF844	chr19	12184972	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000441304	ENST00000489081		TCGA	LD	BLCA	TCGA-G2-A3VY-01A	ZNF844	chr19	12184972	+	CMSS1	chr3	99865817	+
intron-5UTR	ENST00000352393	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000352393	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000317677	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000317677	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397445	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397445	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000317619	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000317619	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397443	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397443	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397446	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397446	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397442	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000397442	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000475146	ENST00000568305		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
intron-5UTR	ENST00000475146	ENST00000374954		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	CPNE1	chr20	34214143	-	ASIP	chr20	32848173	+
Frame-shit	ENST00000354366	ENST00000256343		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	NRDE2	chr14	90798185	-	CATSPERB	chr14	92091351	-
5UTR-3CDS	ENST00000357904	ENST00000256343		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	NRDE2	chr14	90798185	-	CATSPERB	chr14	92091351	-
5UTR-3CDS	ENST00000557106	ENST00000256343		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	NRDE2	chr14	90798185	-	CATSPERB	chr14	92091351	-
intron-3CDS	ENST00000344318	ENST00000307790		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-3CDS	ENST00000344318	ENST00000397771		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-3CDS	ENST00000344318	ENST00000542393		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-intron	ENST00000344318	ENST00000478812		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-3CDS	ENST00000397781	ENST00000307790		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-3CDS	ENST00000397781	ENST00000397771		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-3CDS	ENST00000397781	ENST00000542393		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
intron-intron	ENST00000397781	ENST00000478812		TCGA	LD	BLCA	TCGA-G2-AA3B-01A	ZMAT5	chr22	30162938	-	ASCC2	chr22	30189665	-
5UTR-3CDS	ENST00000408952	ENST00000344843		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5UTR-5UTR	ENST00000408952	ENST00000493287		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5UTR-intron	ENST00000408952	ENST00000482352		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000400809	ENST00000344843		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000400809	ENST00000493287		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-intron	ENST00000400809	ENST00000482352		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-3CDS	ENST00000505849	ENST00000344843		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-5UTR	ENST00000505849	ENST00000493287		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-intron	ENST00000505849	ENST00000482352		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000408918	ENST00000344843		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000408918	ENST00000493287		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-intron	ENST00000408918	ENST00000482352		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-intron	ENST00000607334	ENST00000495013		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	DLEU2	chr13	50699438	-	MED4	chr13	48664554	-
intron-intron	ENST00000607334	ENST00000258648		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	DLEU2	chr13	50699438	-	MED4	chr13	48664554	-
intron-5UTR	ENST00000607334	ENST00000378586		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	DLEU2	chr13	50699438	-	MED4	chr13	48664554	-
5UTR-3CDS	ENST00000531894	ENST00000342711		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	PDXDC2P	chr16	70044654	-	CDC42BPG	chr11	64600431	-
5UTR-intron	ENST00000531894	ENST00000491280		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	PDXDC2P	chr16	70044654	-	CDC42BPG	chr11	64600431	-
intron-3CDS	ENST00000525173	ENST00000342711		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	PDXDC2P	chr16	70044654	-	CDC42BPG	chr11	64600431	-
intron-intron	ENST00000525173	ENST00000491280		TCGA	LD	BLCA	TCGA-G2-AA3D-01A	PDXDC2P	chr16	70044654	-	CDC42BPG	chr11	64600431	-
Frame-shit	ENST00000389811	ENST00000272797		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5CDS-5UTR	ENST00000389811	ENST00000602521		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5CDS-5UTR	ENST00000389811	ENST00000392647		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
Frame-shit	ENST00000439055	ENST00000272797		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5CDS-5UTR	ENST00000439055	ENST00000602521		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5CDS-5UTR	ENST00000439055	ENST00000392647		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
Frame-shit	ENST00000340561	ENST00000272797		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5CDS-5UTR	ENST00000340561	ENST00000602521		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5CDS-5UTR	ENST00000340561	ENST00000392647		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
intron-3CDS	ENST00000496981	ENST00000272797		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
intron-5UTR	ENST00000496981	ENST00000602521		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
intron-5UTR	ENST00000496981	ENST00000392647		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111526041	+	KLHL23	chr2	170597895	+
5UTR-5UTR	ENST00000389811	ENST00000260956		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
5UTR-5UTR	ENST00000389811	ENST00000409333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
5UTR-5UTR	ENST00000439055	ENST00000260956		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
5UTR-5UTR	ENST00000439055	ENST00000409333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
5UTR-5UTR	ENST00000340561	ENST00000260956		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
5UTR-5UTR	ENST00000340561	ENST00000409333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
intron-5UTR	ENST00000496981	ENST00000260956		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
intron-5UTR	ENST00000496981	ENST00000409333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	ACOXL	chr2	111490351	+	SSB	chr2	170657462	+
5CDS-5UTR	ENST00000486715	ENST00000432054		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000486715	ENST00000393238		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000486715	ENST00000426664		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000486715	ENST00000329333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000486715	ENST00000515024		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000478576	ENST00000432054		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000478576	ENST00000393238		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000478576	ENST00000426664		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000478576	ENST00000329333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000478576	ENST00000515024		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000264263	ENST00000432054		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000264263	ENST00000393238		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000264263	ENST00000426664		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000264263	ENST00000329333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000264263	ENST00000515024		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000490261	ENST00000432054		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000490261	ENST00000393238		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000490261	ENST00000426664		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000490261	ENST00000329333		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
intron-intron	ENST00000490261	ENST00000515024		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	GFM1	chr3	158399946	+	TMCC1	chr3	129390107	-
Frame-shit	ENST00000544547	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
5CDS-3UTR	ENST00000544547	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000332345	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000332345	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000393310	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000393310	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000410093	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000410093	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000409441	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000409441	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000338045	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000338045	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000462817	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000462817	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000542845	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000542845	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3CDS	ENST00000393314	ENST00000488633		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
intron-3UTR	ENST00000393314	ENST00000469320		TCGA	LD	BLCA	TCGA-G2-AA3F-01A	LIMS1	chr2	109151050	+	CIAO1	chr2	96933059	+
5CDS-5UTR	ENST00000586182	ENST00000417138		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	CYP4F3	chr19	15752423	+	DSCR4-IT1	chr21	39379128	-
5CDS-5UTR	ENST00000591058	ENST00000417138		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	CYP4F3	chr19	15752423	+	DSCR4-IT1	chr21	39379128	-
5CDS-5UTR	ENST00000221307	ENST00000417138		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	CYP4F3	chr19	15752423	+	DSCR4-IT1	chr21	39379128	-
5CDS-5UTR	ENST00000585846	ENST00000417138		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	CYP4F3	chr19	15752423	+	DSCR4-IT1	chr21	39379128	-
intron-5UTR	ENST00000588886	ENST00000417138		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	CYP4F3	chr19	15752423	+	DSCR4-IT1	chr21	39379128	-
Frame-shit	ENST00000404826	ENST00000396872		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
In-frame	ENST00000404826	ENST00000297195		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
In-frame	ENST00000404826	ENST00000406453		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
5CDS-intron	ENST00000404826	ENST00000439491		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
Frame-shit	ENST00000389531	ENST00000396872		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
In-frame	ENST00000389531	ENST00000297195		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
In-frame	ENST00000389531	ENST00000406453		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
5CDS-intron	ENST00000389531	ENST00000439491		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
intron-3CDS	ENST00000466611	ENST00000396872		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
intron-3CDS	ENST00000466611	ENST00000297195		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
intron-3CDS	ENST00000466611	ENST00000406453		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
intron-intron	ENST00000466611	ENST00000439491		TCGA	LD	BLCA	TCGA-GC-A3RB-01A	SDK1	chr7	4218218	+	SLC29A4	chr7	5342428	+
Frame-shit	ENST00000395443	ENST00000265563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
In-frame	ENST00000395443	ENST00000454963		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
Frame-shit	ENST00000395443	ENST00000296446		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
Frame-shit	ENST00000357496	ENST00000265563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
In-frame	ENST00000357496	ENST00000454963		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
Frame-shit	ENST00000357496	ENST00000296446		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
Frame-shit	ENST00000424300	ENST00000265563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
In-frame	ENST00000424300	ENST00000454963		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
Frame-shit	ENST00000424300	ENST00000296446		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
5UTR-3CDS	ENST00000479449	ENST00000265563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
5UTR-3CDS	ENST00000479449	ENST00000454963		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
5UTR-3CDS	ENST00000479449	ENST00000296446		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	QRICH1	chr3	49081823	-	PRKAR2A	chr3	48845117	-
5CDS-intron	ENST00000314289	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000314289	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000314289	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-5UTR	ENST00000314289	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000314289	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000314289	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000314289	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000541204	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000541204	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000541204	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-5UTR	ENST00000541204	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000541204	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000541204	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000541204	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000509258	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000509258	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000509258	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-5UTR	ENST00000509258	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000509258	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000509258	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000509258	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000511843	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000511843	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000511843	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-5UTR	ENST00000511843	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000511843	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000511843	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
intron-intron	ENST00000511843	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-intron	ENST00000511859	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-intron	ENST00000511859	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-intron	ENST00000511859	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-5UTR	ENST00000511859	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-intron	ENST00000511859	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-intron	ENST00000511859	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
3UTR-intron	ENST00000511859	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000506706	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000506706	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000506706	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-5UTR	ENST00000506706	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000506706	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000506706	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000506706	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000511600	ENST00000252577		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000511600	ENST00000360315		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000511600	ENST00000537887		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-5UTR	ENST00000511600	ENST00000404158		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000511600	ENST00000358713		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000511600	ENST00000429563		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
5CDS-intron	ENST00000511600	ENST00000473184		TCGA	LD	BLCA	TCGA-GC-A3RC-01A	RNF4	chr4	2515524	+	GATAD2A	chr19	19546940	+
In-frame	ENST00000221466	ENST00000391857		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
5CDS-3UTR	ENST00000221466	ENST00000477613		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
In-frame	ENST00000426395	ENST00000391857		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
5CDS-3UTR	ENST00000426395	ENST00000477613		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
3UTR-3CDS	ENST00000594823	ENST00000391857		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
3UTR-3UTR	ENST00000594823	ENST00000477613		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
intron-3CDS	ENST00000599988	ENST00000391857		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
intron-3UTR	ENST00000599988	ENST00000477613		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
intron-3CDS	ENST00000596975	ENST00000391857		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
intron-3UTR	ENST00000596975	ENST00000477613		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FCGRT	chr19	50017743	+	RPL13A	chr19	49994036	+
5UTR-3CDS	ENST00000299293	ENST00000283228		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000299293	ENST00000440835		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000299293	ENST00000537619		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000299293	ENST00000378778		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000299293	ENST00000342084		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000299293	ENST00000549308		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-3CDS	ENST00000549921	ENST00000283228		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000549921	ENST00000440835		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000549921	ENST00000537619		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000549921	ENST00000378778		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000549921	ENST00000342084		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000549921	ENST00000549308		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
intron-3CDS	ENST00000550389	ENST00000283228		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000550389	ENST00000440835		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000550389	ENST00000537619		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000550389	ENST00000378778		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000550389	ENST00000342084		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000550389	ENST00000549308		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-3CDS	ENST00000397997	ENST00000283228		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000397997	ENST00000440835		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000397997	ENST00000537619		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000397997	ENST00000378778		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000397997	ENST00000342084		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000397997	ENST00000549308		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000284116	ENST00000543872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000284116	ENST00000578922		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000284116	ENST00000300917		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000284116	ENST00000580498		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
Frame-shit	ENST00000581140	ENST00000543872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581140	ENST00000578922		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581140	ENST00000300917		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581140	ENST00000580498		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
Frame-shit	ENST00000581276	ENST00000543872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581276	ENST00000578922		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581276	ENST00000300917		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581276	ENST00000580498		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
In-frame	ENST00000299314	ENST00000229195		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
In-frame	ENST00000299314	ENST00000418359		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000299314	ENST00000548230		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000299314	ENST00000551483		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
In-frame	ENST00000549940	ENST00000229195		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
In-frame	ENST00000549940	ENST00000418359		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000549940	ENST00000548230		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000549940	ENST00000551483		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-3CDS	ENST00000392919	ENST00000229195		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-3CDS	ENST00000392919	ENST00000418359		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-intron	ENST00000392919	ENST00000548230		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-intron	ENST00000392919	ENST00000551483		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-3CDS	ENST00000549165	ENST00000229195		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-3CDS	ENST00000549165	ENST00000418359		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-intron	ENST00000549165	ENST00000548230		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
intron-intron	ENST00000549165	ENST00000551483		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	GNPTAB	chr12	102173930	-	CNOT2	chr12	70704675	+
Frame-shit	ENST00000373548	ENST00000244137		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000373548	ENST00000397032		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000373548	ENST00000436370		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
5CDS-intron	ENST00000373548	ENST00000591968		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000373541	ENST00000244137		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000373541	ENST00000397032		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000373541	ENST00000436370		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
5CDS-intron	ENST00000373541	ENST00000591968		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
3UTR-3CDS	ENST00000490081	ENST00000244137		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
3UTR-3CDS	ENST00000490081	ENST00000397032		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
3UTR-3CDS	ENST00000490081	ENST00000436370		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
3UTR-intron	ENST00000490081	ENST00000591968		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	HDAC1	chr1	32793278	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000369980	ENST00000303391		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000369980	ENST00000453960		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000369980	ENST00000407218		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5CDS-5UTR	ENST00000369980	ENST00000460227		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000369974	ENST00000303391		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000369974	ENST00000453960		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000369974	ENST00000407218		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5CDS-5UTR	ENST00000369974	ENST00000460227		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000393682	ENST00000303391		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000393682	ENST00000453960		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000393682	ENST00000407218		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5CDS-5UTR	ENST00000393682	ENST00000460227		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5UTR-3CDS	ENST00000477274	ENST00000303391		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5UTR-3CDS	ENST00000477274	ENST00000453960		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5UTR-3CDS	ENST00000477274	ENST00000407218		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5UTR-5UTR	ENST00000477274	ENST00000460227		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000429936	ENST00000303391		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000429936	ENST00000453960		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000429936	ENST00000407218		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5CDS-5UTR	ENST00000429936	ENST00000460227		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000393687	ENST00000303391		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000393687	ENST00000453960		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
Frame-shit	ENST00000393687	ENST00000407218		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
5CDS-5UTR	ENST00000393687	ENST00000460227		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	IRAK1	chrX	153283457	-	MECP2	chrX	153298008	-
intron-3UTR	ENST00000568630	ENST00000361570		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000304494		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000579755		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000579122		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000578845		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000530628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000498124		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000498628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-3UTR	ENST00000568630	ENST00000494262		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-intron	ENST00000568630	ENST00000446177		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-intron	ENST00000568630	ENST00000479692		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-intron	ENST00000568630	ENST00000497750		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
intron-intron	ENST00000568630	ENST00000470819		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000361570		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000304494		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000579755		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000579122		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000578845		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000530628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000498124		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000498628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000545763	ENST00000494262		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000545763	ENST00000446177		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000545763	ENST00000479692		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000545763	ENST00000497750		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000545763	ENST00000470819		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000361570		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000304494		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000579755		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000579122		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000578845		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000530628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000498124		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000498628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000389936	ENST00000494262		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000389936	ENST00000446177		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000389936	ENST00000479692		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000389936	ENST00000497750		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000389936	ENST00000470819		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000361570		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000304494		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000579755		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000579122		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000578845		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000530628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000498124		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000498628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000219905	ENST00000494262		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000219905	ENST00000446177		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000219905	ENST00000479692		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000219905	ENST00000497750		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000219905	ENST00000470819		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000361570		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000304494		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000579755		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000579122		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000578845		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000530628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000498124		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000498628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000566586	ENST00000494262		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000566586	ENST00000446177		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000566586	ENST00000479692		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000566586	ENST00000497750		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000566586	ENST00000470819		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000361570		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000304494		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000579755		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000579122		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000578845		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000530628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000498124		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000498628		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000570161	ENST00000494262		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000570161	ENST00000446177		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000570161	ENST00000479692		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000570161	ENST00000497750		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000570161	ENST00000470819		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	MGA	chr15	42005694	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000283228	ENST00000550385		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
5CDS-3UTR	ENST00000283228	ENST00000229266		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
5CDS-3UTR	ENST00000283228	ENST00000549872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000440835	ENST00000550385		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000440835	ENST00000229266		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000440835	ENST00000549872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000537619	ENST00000550385		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000537619	ENST00000229266		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000537619	ENST00000549872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000378778	ENST00000550385		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000378778	ENST00000229266		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000378778	ENST00000549872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000342084	ENST00000550385		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000342084	ENST00000229266		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000342084	ENST00000549872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000549308	ENST00000550385		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000549308	ENST00000229266		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
intron-3UTR	ENST00000549308	ENST00000549872		TCGA	LD	BLCA	TCGA-GC-A3RD-01A	PTPRR	chr12	71286459	-	CHPT1	chr12	102110506	+
Frame-shit	ENST00000471389	ENST00000258173		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
In-frame	ENST00000471389	ENST00000568377		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
Frame-shit	ENST00000471389	ENST00000565067		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
5CDS-intron	ENST00000471389	ENST00000569294		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
5UTR-3CDS	ENST00000394647	ENST00000258173		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
5UTR-3CDS	ENST00000394647	ENST00000568377		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
5UTR-3CDS	ENST00000394647	ENST00000565067		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
5UTR-intron	ENST00000394647	ENST00000569294		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000431610	ENST00000258173		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000431610	ENST00000568377		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000431610	ENST00000565067		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-intron	ENST00000431610	ENST00000569294		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000460382	ENST00000258173		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000460382	ENST00000568377		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000460382	ENST00000565067		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-intron	ENST00000460382	ENST00000569294		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000463855	ENST00000258173		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000463855	ENST00000568377		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000463855	ENST00000565067		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-intron	ENST00000463855	ENST00000569294		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000472835	ENST00000258173		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000472835	ENST00000568377		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-3CDS	ENST00000472835	ENST00000565067		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
intron-intron	ENST00000472835	ENST00000569294		TCGA	LD	BLCA	TCGA-GC-A3YS-01A	FTO	chr16	53738141	+	TMEM231	chr16	75589871	-
5UTR-5UTR	ENST00000564349	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000564349	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
5UTR-3UTR	ENST00000564349	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000564349	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000564349	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
5UTR-5UTR	ENST00000564349	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000300005	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000300005	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000300005	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000300005	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000300005	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000300005	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000357967	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000357967	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000357967	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000357967	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000357967	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000357967	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000569729	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000569729	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000569729	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000569729	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000569729	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000569729	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000389345	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000389345	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000389345	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000389345	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000389345	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000389345	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563117	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563117	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000563117	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563117	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563117	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000563117	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000568251	ENST00000233047		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000568251	ENST00000572258		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3UTR	ENST00000568251	ENST00000574092		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000568251	ENST00000261388		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000568251	ENST00000451578		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-5UTR	ENST00000568251	ENST00000572599		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	ERI2	chr16	20907630	-	TMEM159	chr16	21172406	+
intron-3CDS	ENST00000538689	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000538689	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000538689	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000538689	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000538689	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
In-frame	ENST00000220584	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
In-frame	ENST00000220584	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
In-frame	ENST00000220584	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
5CDS-intron	ENST00000220584	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
5CDS-3UTR	ENST00000220584	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000446331	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000446331	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000446331	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000446331	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000446331	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
In-frame	ENST00000443614	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
In-frame	ENST00000443614	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
In-frame	ENST00000443614	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
5CDS-intron	ENST00000443614	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
5CDS-3UTR	ENST00000443614	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000525900	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000525900	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000525900	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000525900	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000525900	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000528812	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000528812	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000528812	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000528812	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000528812	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000530664	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000530664	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000530664	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000530664	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000530664	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000528643	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000528643	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000528643	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000528643	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000528643	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000525777	ENST00000520408		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000525777	ENST00000310430		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3CDS	ENST00000525777	ENST00000518281		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-intron	ENST00000525777	ENST00000522110		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
intron-3UTR	ENST00000525777	ENST00000518027		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	FDFT1	chr8	11660440	+	TNKS	chr8	9562173	+
3UTR-intron	ENST00000381750	ENST00000381858		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
3UTR-intron	ENST00000381750	ENST00000381854		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
3UTR-intron	ENST00000381750	ENST00000479095		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381730	ENST00000381858		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381730	ENST00000381854		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381730	ENST00000479095		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381728	ENST00000381858		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381728	ENST00000381854		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381728	ENST00000479095		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000448872	ENST00000381858		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000448872	ENST00000381854		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000448872	ENST00000479095		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381732	ENST00000381858		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381732	ENST00000381854		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
intron-intron	ENST00000381732	ENST00000479095		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
3UTR-intron	ENST00000445485	ENST00000381858		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
3UTR-intron	ENST00000445485	ENST00000381854		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
3UTR-intron	ENST00000445485	ENST00000479095		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RCL1	chr9	4860901	+	CDC37L1	chr9	4706011	+
5CDS-5UTR	ENST00000571133	ENST00000396212		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5CDS-5UTR	ENST00000571133	ENST00000381396		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5CDS-intron	ENST00000571133	ENST00000573412		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5CDS-5UTR	ENST00000571133	ENST00000396208		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5UTR-5UTR	ENST00000542106	ENST00000396212		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5UTR-5UTR	ENST00000542106	ENST00000381396		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5UTR-intron	ENST00000542106	ENST00000573412		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
5UTR-5UTR	ENST00000542106	ENST00000396208		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	RSL1D1	chr16	11941525	-	CCP110	chr16	19539189	+
intron-5UTR	ENST00000218089	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000218089	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000469481	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000469481	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000354548	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
intron-5UTR	ENST00000354548	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371160	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371160	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371157	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371157	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371145	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371145	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371144	ENST00000465301		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
5UTR-5UTR	ENST00000371144	ENST00000540313		TCGA	LD	BLCA	TCGA-GC-A4ZW-01A	STAG2	chrX	123095706	+	RGAG1	chrX	109693795	+
Frame-shit	ENST00000329623	ENST00000346798		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000354192		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000348990		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000357903		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000358918		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000359726		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000448388		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000440126		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000439274		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000329623	ENST00000474136		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
In-frame	ENST00000380486	ENST00000346798		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000354192		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000348990		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000357903		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000358918		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000359726		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000448388		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000440126		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000439274		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-intron	ENST00000380486	ENST00000474136		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-3CDS	ENST00000478372	ENST00000346798		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000354192		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000348990		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000357903		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000358918		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000359726		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000448388		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000440126		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000439274		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
intron-intron	ENST00000478372	ENST00000474136		TCGA	LD	BLCA	TCGA-GD-A3OP-01A	C2CD2	chr21	43325833	-	APP	chr21	27372497	-
5CDS-5UTR	ENST00000488633	ENST00000389938		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	CIAO1	chr2	96933207	+	SH2D6	chr2	85649326	+
5CDS-intron	ENST00000488633	ENST00000481426		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	CIAO1	chr2	96933207	+	SH2D6	chr2	85649326	+
5CDS-intron	ENST00000488633	ENST00000340326		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	CIAO1	chr2	96933207	+	SH2D6	chr2	85649326	+
3UTR-5UTR	ENST00000469320	ENST00000389938		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	CIAO1	chr2	96933207	+	SH2D6	chr2	85649326	+
3UTR-intron	ENST00000469320	ENST00000481426		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	CIAO1	chr2	96933207	+	SH2D6	chr2	85649326	+
3UTR-intron	ENST00000469320	ENST00000340326		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	CIAO1	chr2	96933207	+	SH2D6	chr2	85649326	+
In-frame	ENST00000371817	ENST00000338961		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	COL5A1	chr9	137677894	+	PTGES2	chr9	130887720	-
5CDS-5UTR	ENST00000371817	ENST00000277462		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	COL5A1	chr9	137677894	+	PTGES2	chr9	130887720	-
5CDS-5UTR	ENST00000371817	ENST00000483625		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	COL5A1	chr9	137677894	+	PTGES2	chr9	130887720	-
intron-3CDS	ENST00000464187	ENST00000338961		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	COL5A1	chr9	137677894	+	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000464187	ENST00000277462		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	COL5A1	chr9	137677894	+	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000464187	ENST00000483625		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	COL5A1	chr9	137677894	+	PTGES2	chr9	130887720	-
Frame-shit	ENST00000393158	ENST00000260247		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDGFD	chr11	104034532	-	DCUN1D5	chr11	102933143	-
Frame-shit	ENST00000393158	ENST00000531543		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDGFD	chr11	104034532	-	DCUN1D5	chr11	102933143	-
5CDS-intron	ENST00000393158	ENST00000529076		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDGFD	chr11	104034532	-	DCUN1D5	chr11	102933143	-
Frame-shit	ENST00000302251	ENST00000260247		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDGFD	chr11	104034532	-	DCUN1D5	chr11	102933143	-
Frame-shit	ENST00000302251	ENST00000531543		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDGFD	chr11	104034532	-	DCUN1D5	chr11	102933143	-
5CDS-intron	ENST00000302251	ENST00000529076		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDGFD	chr11	104034532	-	DCUN1D5	chr11	102933143	-
5CDS-3UTR	ENST00000402685	ENST00000525739		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDZRN4	chr12	41585346	+	WTAPP1	chr11	102668755	+
intron-3UTR	ENST00000539469	ENST00000525739		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDZRN4	chr12	41585346	+	WTAPP1	chr11	102668755	+
intron-3UTR	ENST00000298919	ENST00000525739		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PDZRN4	chr12	41585346	+	WTAPP1	chr11	102668755	+
Frame-shit	ENST00000377242	ENST00000306384		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP5	chr2	85818848	+
Frame-shit	ENST00000377252	ENST00000306384		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP5	chr2	85818848	+
intron-3CDS	ENST00000377238	ENST00000306384		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP5	chr2	85818848	+
5CDS-5UTR	ENST00000377242	ENST00000432071		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000377242	ENST00000263864		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000377242	ENST00000409760		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000377252	ENST00000432071		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000377252	ENST00000263864		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000377252	ENST00000409760		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
intron-5UTR	ENST00000377238	ENST00000432071		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
intron-5UTR	ENST00000377238	ENST00000263864		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
intron-5UTR	ENST00000377238	ENST00000409760		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	PLXDC2	chr10	20106120	+	VAMP8	chr2	85806132	+
5UTR-3CDS	ENST00000389938	ENST00000452400		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
5UTR-intron	ENST00000389938	ENST00000267974		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
5UTR-intron	ENST00000389938	ENST00000524223		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
intron-3CDS	ENST00000481426	ENST00000452400		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
intron-intron	ENST00000481426	ENST00000267974		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
intron-intron	ENST00000481426	ENST00000524223		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
intron-3CDS	ENST00000340326	ENST00000452400		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
intron-intron	ENST00000340326	ENST00000267974		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
intron-intron	ENST00000340326	ENST00000524223		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	SH2D6	chr2	85649813	+	NCOA2	chr8	71082614	-
In-frame	ENST00000263904	ENST00000458381		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
In-frame	ENST00000263904	ENST00000444448		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
In-frame	ENST00000263904	ENST00000317647		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
In-frame	ENST00000263904	ENST00000445023		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
In-frame	ENST00000263904	ENST00000397206		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
In-frame	ENST00000263904	ENST00000421711		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
In-frame	ENST00000263904	ENST00000397209		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000458381		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000444448		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000317647		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000445023		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000397206		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000421711		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
intron-3CDS	ENST00000465460	ENST00000397209		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	STAM2	chr2	153032117	-	NOSTRIN	chr2	169687982	+
5UTR-3CDS	ENST00000258439	ENST00000377524		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TMEM127	chr2	96931607	-	STAM	chr10	17726674	+
5UTR-intron	ENST00000258439	ENST00000540523		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TMEM127	chr2	96931607	-	STAM	chr10	17726674	+
5UTR-3CDS	ENST00000432959	ENST00000377524		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TMEM127	chr2	96931607	-	STAM	chr10	17726674	+
5UTR-intron	ENST00000432959	ENST00000540523		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TMEM127	chr2	96931607	-	STAM	chr10	17726674	+
intron-3CDS	ENST00000435268	ENST00000377524		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TMEM127	chr2	96931607	-	STAM	chr10	17726674	+
intron-intron	ENST00000435268	ENST00000540523		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TMEM127	chr2	96931607	-	STAM	chr10	17726674	+
In-frame	ENST00000253024	ENST00000600118		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRIM28	chr19	59061651	+	CHMP2A	chr19	59063805	-
In-frame	ENST00000253024	ENST00000601220		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRIM28	chr19	59061651	+	CHMP2A	chr19	59063805	-
In-frame	ENST00000253024	ENST00000312547		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRIM28	chr19	59061651	+	CHMP2A	chr19	59063805	-
In-frame	ENST00000341753	ENST00000600118		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRIM28	chr19	59061651	+	CHMP2A	chr19	59063805	-
In-frame	ENST00000341753	ENST00000601220		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRIM28	chr19	59061651	+	CHMP2A	chr19	59063805	-
In-frame	ENST00000341753	ENST00000312547		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRIM28	chr19	59061651	+	CHMP2A	chr19	59063805	-
Frame-shit	ENST00000372890	ENST00000298480		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000487664		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000371757		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000486577		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000491806		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000488444		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000490355		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
Frame-shit	ENST00000372890	ENST00000263604		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000298480		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000487664		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000371757		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000486577		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000491806		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000488444		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000490355		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
In-frame	ENST00000546104	ENST00000263604		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000298480		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000487664		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000371757		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000486577		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000491806		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000488444		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000490355		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5UTR-3CDS	ENST00000460320	ENST00000263604		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	TRUB2	chr9	131083878	-	KCNT1	chr9	138641944	+
5CDS-intron	ENST00000526343	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000526343	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000526343	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000526343	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000526343	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000526343	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000282441	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000282441	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000282441	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000282441	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000282441	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000282441	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000537274	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000537274	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000537274	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000537274	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000537274	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000537274	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000345877	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000345877	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000345877	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000345877	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000345877	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000345877	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000531439	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000531439	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000531439	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000531439	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000531439	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000531439	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000524575	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000524575	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000524575	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000524575	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000524575	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000524575	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
intron-intron	ENST00000528834	ENST00000527185		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
intron-intron	ENST00000528834	ENST00000528682		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
intron-intron	ENST00000528834	ENST00000524871		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
intron-intron	ENST00000528834	ENST00000418526		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
intron-intron	ENST00000528834	ENST00000279463		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
intron-intron	ENST00000528834	ENST00000524560		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	CNTN5	chr11	98920321	+
5CDS-intron	ENST00000526343	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000526343	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000526343	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000526343	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000282441	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000282441	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000282441	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000282441	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000537274	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000537274	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000537274	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000537274	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000345877	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000345877	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000345877	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000345877	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000531439	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000531439	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000531439	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000531439	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000524575	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000524575	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000524575	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000524575	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000528834	ENST00000441339		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000528834	ENST00000308946		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000528834	ENST00000535407		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000528834	ENST00000541137		TCGA	LD	BLCA	TCGA-GD-A3OS-01A	YAP1	chr11	101985125	+	MYEOV	chr11	69156278	+
5UTR-5UTR	ENST00000359798	ENST00000215582		TCGA	LD	BLCA	TCGA-GU-A42Q-01A	ZNF808	chr19	53030964	+	MISP	chr19	756890	+
5CDS-intron	ENST00000474524	ENST00000217074		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-3UTR	ENST00000474524	ENST00000255136		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-3UTR	ENST00000474524	ENST00000537323		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000474524	ENST00000217073		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000474524	ENST00000490798		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-3UTR	ENST00000474524	ENST00000372824		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000474524	ENST00000372819		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000474524	ENST00000217075		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000273432	ENST00000217074		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-3UTR	ENST00000273432	ENST00000255136		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-3UTR	ENST00000273432	ENST00000537323		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000273432	ENST00000217073		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000273432	ENST00000490798		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-3UTR	ENST00000273432	ENST00000372824		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000273432	ENST00000372819		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
5CDS-intron	ENST00000273432	ENST00000217075		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000491549	ENST00000217074		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000491549	ENST00000255136		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000491549	ENST00000537323		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000491549	ENST00000217073		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000491549	ENST00000490798		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000491549	ENST00000372824		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000491549	ENST00000372819		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000491549	ENST00000217075		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000422248	ENST00000217074		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000422248	ENST00000255136		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000422248	ENST00000537323		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000422248	ENST00000217073		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000422248	ENST00000490798		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000422248	ENST00000372824		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000422248	ENST00000372819		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000422248	ENST00000217075		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000309237	ENST00000217074		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000309237	ENST00000255136		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000309237	ENST00000537323		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000309237	ENST00000217073		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000309237	ENST00000490798		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-3UTR	ENST00000309237	ENST00000372824		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000309237	ENST00000372819		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
intron-intron	ENST00000309237	ENST00000217075		TCGA	LD	BLCA	TCGA-GU-A42R-01A	MED12L	chr3	151148168	+	PABPC1L	chr20	43567767	+
In-frame	ENST00000474629	ENST00000261038		TCGA	LD	BLCA	TCGA-GU-A764-01A	PARP14	chr3	122439235	+	DIRC2	chr3	122598110	+
3UTR-3CDS	ENST00000475640	ENST00000261038		TCGA	LD	BLCA	TCGA-GU-A764-01A	PARP14	chr3	122439235	+	DIRC2	chr3	122598110	+
Frame-shit	ENST00000378662	ENST00000232375		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000378662	ENST00000536104		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000378662	ENST00000416568		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000378662	ENST00000541519		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
5CDS-intron	ENST00000378662	ENST00000383734		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
5CDS-5UTR	ENST00000378662	ENST00000490115		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
5CDS-3UTR	ENST00000378662	ENST00000545984		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000234800	ENST00000232375		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000234800	ENST00000536104		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000234800	ENST00000416568		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
Frame-shit	ENST00000234800	ENST00000541519		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
5CDS-intron	ENST00000234800	ENST00000383734		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
5CDS-5UTR	ENST00000234800	ENST00000490115		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
5CDS-3UTR	ENST00000234800	ENST00000545984		TCGA	LD	BLCA	TCGA-GU-A764-01A	SLC35E2B	chr1	1601103	-	PFKFB4	chr3	48563102	-
In-frame	ENST00000367879	ENST00000368827		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000367879	ENST00000368825		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000367879	ENST00000368824		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000367879	ENST00000368823		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000367879	ENST00000368822		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000367879	ENST00000458431		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000367879	ENST00000440583		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
5CDS-intron	ENST00000367879	ENST00000484421		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000368827		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000368825		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000368824		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000368823		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000368822		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000458431		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
In-frame	ENST00000372212	ENST00000440583		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
5CDS-intron	ENST00000372212	ENST00000484421		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000368827		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000368825		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000368824		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000368823		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000368822		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000458431		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000462329	ENST00000440583		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-intron	ENST00000462329	ENST00000484421		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000368827		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000368825		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000368824		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000368823		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000368822		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000458431		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000469256	ENST00000440583		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-intron	ENST00000469256	ENST00000484421		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000368827		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000368825		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000368824		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000368823		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000368822		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000458431		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-3CDS	ENST00000470820	ENST00000440583		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
intron-intron	ENST00000470820	ENST00000484421		TCGA	LD	BLCA	TCGA-GU-A764-01A	UCK2	chr1	165797169	+	TDRKH	chr1	151747642	-
5UTR-intron	ENST00000535420	ENST00000392302		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000535420	ENST00000368196		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000535420	ENST00000524377		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000535420	ENST00000358660		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000535420	ENST00000531606		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000368426	ENST00000392302		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000368426	ENST00000368196		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000368426	ENST00000524377		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000368426	ENST00000358660		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000368426	ENST00000531606		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
3UTR-intron	ENST00000487542	ENST00000392302		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
3UTR-intron	ENST00000487542	ENST00000368196		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
3UTR-intron	ENST00000487542	ENST00000524377		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
3UTR-intron	ENST00000487542	ENST00000358660		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
3UTR-intron	ENST00000487542	ENST00000531606		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000417934	ENST00000392302		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000417934	ENST00000368196		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000417934	ENST00000524377		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000417934	ENST00000358660		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5UTR-intron	ENST00000417934	ENST00000531606		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
intron-intron	ENST00000292176	ENST00000392302		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
intron-intron	ENST00000292176	ENST00000368196		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
intron-intron	ENST00000292176	ENST00000524377		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
intron-intron	ENST00000292176	ENST00000358660		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
intron-intron	ENST00000292176	ENST00000531606		TCGA	LD	BLCA	TCGA-GU-A764-01A	ZBTB7B	chr1	154975419	+	NTRK1	chr1	156807518	+
5CDS-intron	ENST00000006777	ENST00000455089		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000342916		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000344576		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000420316		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000275493		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000442591		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000463948		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000006777	ENST00000454757		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000455089		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000342916		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000344576		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000420316		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000275493		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000442591		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000463948		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000318622	ENST00000454757		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000455089		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000342916		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000344576		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000420316		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000275493		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000442591		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000463948		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
intron-intron	ENST00000468304	ENST00000454757		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000455089		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000342916		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000344576		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000420316		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000275493		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000442591		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000463948		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
5CDS-intron	ENST00000428119	ENST00000454757		TCGA	LD	BLCA	TCGA-GU-A766-01A	RHBDD2	chr7	75513166	+	EGFR	chr7	55111526	+
Frame-shit	ENST00000414213	ENST00000263174		TCGA	LD	BLCA	TCGA-GU-A767-01A	FRRS1	chr1	100206349	-	PALMD	chr1	100127875	+
Frame-shit	ENST00000414213	ENST00000605497		TCGA	LD	BLCA	TCGA-GU-A767-01A	FRRS1	chr1	100206349	-	PALMD	chr1	100127875	+
Frame-shit	ENST00000287474	ENST00000263174		TCGA	LD	BLCA	TCGA-GU-A767-01A	FRRS1	chr1	100206349	-	PALMD	chr1	100127875	+
Frame-shit	ENST00000287474	ENST00000605497		TCGA	LD	BLCA	TCGA-GU-A767-01A	FRRS1	chr1	100206349	-	PALMD	chr1	100127875	+
intron-3CDS	ENST00000492943	ENST00000263174		TCGA	LD	BLCA	TCGA-GU-A767-01A	FRRS1	chr1	100206349	-	PALMD	chr1	100127875	+
intron-3CDS	ENST00000492943	ENST00000605497		TCGA	LD	BLCA	TCGA-GU-A767-01A	FRRS1	chr1	100206349	-	PALMD	chr1	100127875	+
In-frame	ENST00000261667	ENST00000361840		TCGA	LD	BLCA	TCGA-GU-A767-01A	KPNA3	chr13	50366574	-	SPRYD7	chr13	50495716	-
In-frame	ENST00000261667	ENST00000378195		TCGA	LD	BLCA	TCGA-GU-A767-01A	KPNA3	chr13	50366574	-	SPRYD7	chr13	50495716	-
5CDS-intron	ENST00000261667	ENST00000492258		TCGA	LD	BLCA	TCGA-GU-A767-01A	KPNA3	chr13	50366574	-	SPRYD7	chr13	50495716	-
5CDS-3UTR	ENST00000455147	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000455147	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000455147	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000266563	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000266563	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000266563	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
intron-3UTR	ENST00000545220	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
intron-3UTR	ENST00000545220	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
intron-3UTR	ENST00000545220	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000434354	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000434354	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000434354	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000420616	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000420616	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000420616	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000412720	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000412720	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000412720	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000266564	ENST00000546254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000266564	ENST00000545626		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
5CDS-3UTR	ENST00000266564	ENST00000500254		TCGA	LD	BLCA	TCGA-GU-A767-01A	PEX5	chr12	7351709	+	PRB1	chr12	11504863	-
In-frame	ENST00000264380	ENST00000410032		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
In-frame	ENST00000264380	ENST00000264605		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
In-frame	ENST00000264380	ENST00000445024		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
5CDS-3UTR	ENST00000264380	ENST00000468178		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
5CDS-3UTR	ENST00000264380	ENST00000338530		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
5CDS-3UTR	ENST00000264380	ENST00000409373		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000392202	ENST00000410032		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000392202	ENST00000264605		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000392202	ENST00000445024		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000392202	ENST00000468178		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000392202	ENST00000338530		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000392202	ENST00000409373		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000308862	ENST00000410032		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000308862	ENST00000264605		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000308862	ENST00000445024		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000308862	ENST00000468178		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000308862	ENST00000338530		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000308862	ENST00000409373		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000407449	ENST00000410032		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000407449	ENST00000264605		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000407449	ENST00000445024		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000407449	ENST00000468178		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000407449	ENST00000338530		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000407449	ENST00000409373		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000474721	ENST00000410032		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000474721	ENST00000264605		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3CDS	ENST00000474721	ENST00000445024		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000474721	ENST00000468178		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000474721	ENST00000338530		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
intron-3UTR	ENST00000474721	ENST00000409373		TCGA	LD	BLCA	TCGA-GU-A767-01A	PIKFYVE	chr2	209185083	+	MLPH	chr2	238451210	+
In-frame	ENST00000376840	ENST00000394375		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000376840	ENST00000608620		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000376840	ENST00000238983		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000376840	ENST00000355843		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000409318	ENST00000394375		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000409318	ENST00000608620		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000409318	ENST00000238983		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000409318	ENST00000355843		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
intron-3CDS	ENST00000462819	ENST00000394375		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
intron-3CDS	ENST00000462819	ENST00000608620		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
intron-3CDS	ENST00000462819	ENST00000238983		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
intron-3CDS	ENST00000462819	ENST00000355843		TCGA	LD	BLCA	TCGA-GU-A767-01A	TBC1D8	chr2	101666863	-	LIPF	chr10	90438202	+
In-frame	ENST00000462683	ENST00000413272		TCGA	LD	BLCA	TCGA-GU-A767-01A	YIPF6	chrX	67718965	+	NUGGC	chr8	27905129	-
In-frame	ENST00000462683	ENST00000341513		TCGA	LD	BLCA	TCGA-GU-A767-01A	YIPF6	chrX	67718965	+	NUGGC	chr8	27905129	-
3UTR-3CDS	ENST00000470730	ENST00000413272		TCGA	LD	BLCA	TCGA-GU-A767-01A	YIPF6	chrX	67718965	+	NUGGC	chr8	27905129	-
3UTR-3CDS	ENST00000470730	ENST00000341513		TCGA	LD	BLCA	TCGA-GU-A767-01A	YIPF6	chrX	67718965	+	NUGGC	chr8	27905129	-
In-frame	ENST00000374622	ENST00000413272		TCGA	LD	BLCA	TCGA-GU-A767-01A	YIPF6	chrX	67718965	+	NUGGC	chr8	27905129	-
In-frame	ENST00000374622	ENST00000341513		TCGA	LD	BLCA	TCGA-GU-A767-01A	YIPF6	chrX	67718965	+	NUGGC	chr8	27905129	-
5CDS-5UTR	ENST00000421745	ENST00000453400		TCGA	LD	BLCA	TCGA-GU-AATO-01A	BIRC6	chr2	32774548	+	MYCNOS	chr2	16081219	-
5CDS-5UTR	ENST00000421745	ENST00000420452		TCGA	LD	BLCA	TCGA-GU-AATO-01A	BIRC6	chr2	32774548	+	MYCNOS	chr2	16081219	-
5CDS-5UTR	ENST00000421745	ENST00000419083		TCGA	LD	BLCA	TCGA-GU-AATO-01A	BIRC6	chr2	32774548	+	MYCNOS	chr2	16081219	-
5CDS-5UTR	ENST00000421745	ENST00000439180		TCGA	LD	BLCA	TCGA-GU-AATO-01A	BIRC6	chr2	32774548	+	MYCNOS	chr2	16081219	-
5CDS-5UTR	ENST00000421745	ENST00000448719		TCGA	LD	BLCA	TCGA-GU-AATO-01A	BIRC6	chr2	32774548	+	MYCNOS	chr2	16081219	-
Frame-shit	ENST00000273221	ENST00000285018		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	IQSEC1	chr3	12954928	-	WNT7A	chr3	13916670	-
5CDS-5UTR	ENST00000273221	ENST00000497808		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	IQSEC1	chr3	12954928	-	WNT7A	chr3	13916670	-
intron-3CDS	ENST00000473088	ENST00000285018		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	IQSEC1	chr3	12954928	-	WNT7A	chr3	13916670	-
intron-5UTR	ENST00000473088	ENST00000497808		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	IQSEC1	chr3	12954928	-	WNT7A	chr3	13916670	-
Frame-shit	ENST00000397010	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000397010	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000309576	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000309576	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000397015	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000397015	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000397012	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000397012	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000397026	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000397026	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000397000	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000397000	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000539812	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000539812	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000287820	ENST00000273221		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000287820	ENST00000473088		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	PPARG	chr3	12458653	+	IQSEC1	chr3	12983365	-
Frame-shit	ENST00000285018	ENST00000253925		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	WNT7A	chr3	13896029	-	PPFIA1	chr11	70221024	+
Frame-shit	ENST00000285018	ENST00000389547		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	WNT7A	chr3	13896029	-	PPFIA1	chr11	70221024	+
5CDS-3UTR	ENST00000285018	ENST00000530548		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	WNT7A	chr3	13896029	-	PPFIA1	chr11	70221024	+
intron-3CDS	ENST00000497808	ENST00000253925		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	WNT7A	chr3	13896029	-	PPFIA1	chr11	70221024	+
intron-3CDS	ENST00000497808	ENST00000389547		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	WNT7A	chr3	13896029	-	PPFIA1	chr11	70221024	+
intron-3UTR	ENST00000497808	ENST00000530548		TCGA	LD	BLCA	TCGA-GV-A3JV-01A	WNT7A	chr3	13896029	-	PPFIA1	chr11	70221024	+
In-frame	ENST00000378289	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
In-frame	ENST00000378289	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
In-frame	ENST00000378289	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5CDS-intron	ENST00000378289	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5CDS-intron	ENST00000378289	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000453695	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000453695	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000453695	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000453695	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000453695	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378246	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378246	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378246	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378246	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378246	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000357717	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000357717	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000357717	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000357717	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000357717	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
In-frame	ENST00000378278	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
In-frame	ENST00000378278	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
In-frame	ENST00000378278	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5CDS-intron	ENST00000378278	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5CDS-intron	ENST00000378278	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000396817	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000396817	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000396817	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000396817	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000396817	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378254	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378254	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378254	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378254	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378254	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378255	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378255	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378255	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378255	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378255	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000378249	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000378249	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000378249	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-intron	ENST00000378249	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-intron	ENST00000378249	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378258	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378258	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-3CDS	ENST00000378258	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378258	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
5UTR-intron	ENST00000378258	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000378242	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000378242	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000378242	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-intron	ENST00000378242	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-intron	ENST00000378242	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000492201	ENST00000378165		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000492201	ENST00000378150		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-3CDS	ENST00000492201	ENST00000535341		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-intron	ENST00000492201	ENST00000466201		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
intron-intron	ENST00000492201	ENST00000540259		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCLRE1C	chr10	14991035	-	NMT2	chr10	15170457	-
In-frame	ENST00000515408	ENST00000380377		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000515408	ENST00000306388		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000515408	ENST00000520361		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000515408	ENST00000518338		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-5UTR	ENST00000515408	ENST00000522370		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000515408	ENST00000520039		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000515408	ENST00000517679		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000515408	ENST00000517881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000389063	ENST00000380377		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000389063	ENST00000306388		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000389063	ENST00000520361		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000389063	ENST00000518338		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-5UTR	ENST00000389063	ENST00000522370		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000389063	ENST00000520039		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000389063	ENST00000517679		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5CDS-intron	ENST00000389063	ENST00000517881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-3CDS	ENST00000543319	ENST00000380377		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-3CDS	ENST00000543319	ENST00000306388		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-3CDS	ENST00000543319	ENST00000520361		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-3CDS	ENST00000543319	ENST00000518338		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-5UTR	ENST00000543319	ENST00000522370		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-intron	ENST00000543319	ENST00000520039		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-intron	ENST00000543319	ENST00000517679		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
5UTR-intron	ENST00000543319	ENST00000517881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-3CDS	ENST00000504961	ENST00000380377		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-3CDS	ENST00000504961	ENST00000306388		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-3CDS	ENST00000504961	ENST00000520361		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-3CDS	ENST00000504961	ENST00000518338		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-5UTR	ENST00000504961	ENST00000522370		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-intron	ENST00000504961	ENST00000520039		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-intron	ENST00000504961	ENST00000517679		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
3UTR-intron	ENST00000504961	ENST00000517881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	DCP2	chr5	112312683	+	TBCA	chr5	77004172	-
In-frame	ENST00000582151	ENST00000407471		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000582151	ENST00000435822		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000582151	ENST00000490922		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000582151	ENST00000404664		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000582151	ENST00000447813		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000582151	ENST00000402766		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000250124	ENST00000407471		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000250124	ENST00000435822		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000250124	ENST00000490922		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000250124	ENST00000404664		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000250124	ENST00000447813		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000250124	ENST00000402766		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000396501	ENST00000407471		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000396501	ENST00000435822		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000396501	ENST00000490922		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000396501	ENST00000404664		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000396501	ENST00000447813		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000396501	ENST00000402766		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000423172	ENST00000407471		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
In-frame	ENST00000423172	ENST00000435822		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000423172	ENST00000490922		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000423172	ENST00000404664		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000423172	ENST00000447813		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
5CDS-intron	ENST00000423172	ENST00000402766		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	MPDU1	chr17	7487283	+	GUCD1	chr22	24944969	-
Frame-shit	ENST00000264670	ENST00000355162		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
Frame-shit	ENST00000264670	ENST00000346432		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
Frame-shit	ENST00000264670	ENST00000383032		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
5UTR-3CDS	ENST00000539938	ENST00000355162		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
5UTR-3CDS	ENST00000539938	ENST00000346432		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
5UTR-3CDS	ENST00000539938	ENST00000383032		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
Frame-shit	ENST00000506139	ENST00000355162		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
Frame-shit	ENST00000506139	ENST00000346432		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
Frame-shit	ENST00000506139	ENST00000383032		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
intron-3CDS	ENST00000505264	ENST00000355162		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
intron-3CDS	ENST00000505264	ENST00000346432		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
intron-3CDS	ENST00000505264	ENST00000383032		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	NSUN2	chr5	6632712	-	TBL1Y	chrY	6948773	+
intron-5UTR	ENST00000450651	ENST00000436681		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	PI4KAP2	chr22	21868426	-	KB-1183D5.13	chr22	21661317	-
Frame-shit	ENST00000367602	ENST00000528443		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367602	ENST00000271583		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367602	ENST00000606911		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367602	ENST00000435319		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
5CDS-3UTR	ENST00000367602	ENST00000474875		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367600	ENST00000528443		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367600	ENST00000271583		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367600	ENST00000606911		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000367600	ENST00000435319		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
5CDS-3UTR	ENST00000367600	ENST00000474875		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	QSOX1	chr1	180148019	+	TOR1AIP1	chr1	179869261	+
Frame-shit	ENST00000341084	ENST00000318607		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
Frame-shit	ENST00000341084	ENST00000519004		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
Frame-shit	ENST00000341084	ENST00000522387		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
5CDS-intron	ENST00000341084	ENST00000519596		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
Frame-shit	ENST00000519449	ENST00000318607		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
Frame-shit	ENST00000519449	ENST00000519004		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
Frame-shit	ENST00000519449	ENST00000522387		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
5CDS-intron	ENST00000519449	ENST00000519596		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
intron-3CDS	ENST00000523255	ENST00000318607		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
intron-3CDS	ENST00000523255	ENST00000519004		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
intron-3CDS	ENST00000523255	ENST00000522387		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
intron-intron	ENST00000523255	ENST00000519596		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	RNF19A	chr8	101287181	-	PABPC1	chr8	101730508	-
In-frame	ENST00000566228	ENST00000252575		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
In-frame	ENST00000566228	ENST00000538881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
intron-3CDS	ENST00000323433	ENST00000252575		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
intron-3CDS	ENST00000323433	ENST00000538881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
intron-3CDS	ENST00000306030	ENST00000252575		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
intron-3CDS	ENST00000306030	ENST00000538881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
intron-3CDS	ENST00000568359	ENST00000252575		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
intron-3CDS	ENST00000568359	ENST00000538881		TCGA	LD	BLCA	TCGA-GV-A3JW-01A	SNX29	chr16	12121301	+	NCAN	chr19	19344598	+
Frame-shit	ENST00000367993	ENST00000368884		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
Frame-shit	ENST00000367993	ENST00000368881		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
5CDS-intron	ENST00000367993	ENST00000469786		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
Frame-shit	ENST00000392179	ENST00000368884		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
Frame-shit	ENST00000392179	ENST00000368881		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
5CDS-intron	ENST00000392179	ENST00000469786		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
Frame-shit	ENST00000476409	ENST00000368884		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
Frame-shit	ENST00000476409	ENST00000368881		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
5CDS-intron	ENST00000476409	ENST00000469786		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
intron-3CDS	ENST00000465923	ENST00000368884		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
intron-3CDS	ENST00000465923	ENST00000368881		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
intron-intron	ENST00000465923	ENST00000469786		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	NDUFS2	chr1	161176387	+	PSMD4	chr1	151234637	+
Frame-shit	ENST00000229812	ENST00000211936		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	STK38	chr6	36474360	-	ZNF184	chr6	27425188	-
Frame-shit	ENST00000229812	ENST00000377419		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	STK38	chr6	36474360	-	ZNF184	chr6	27425188	-
In-frame	ENST00000360605	ENST00000374618		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000360605	ENST00000432900		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000360605	ENST00000458705		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000360605	ENST00000469037		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000360605	ENST00000476504		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000360605	ENST00000307441		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000542441	ENST00000374618		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000542441	ENST00000432900		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000542441	ENST00000458705		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000542441	ENST00000469037		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000542441	ENST00000476504		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000542441	ENST00000307441		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000392271	ENST00000374618		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000392271	ENST00000432900		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000392271	ENST00000458705		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000392271	ENST00000469037		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000392271	ENST00000476504		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000392271	ENST00000307441		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000312051	ENST00000374618		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000312051	ENST00000432900		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
Frame-shit	ENST00000312051	ENST00000458705		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
In-frame	ENST00000312051	ENST00000469037		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000312051	ENST00000476504		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000312051	ENST00000307441		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
3UTR-3CDS	ENST00000574176	ENST00000374618		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
3UTR-3CDS	ENST00000574176	ENST00000432900		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
3UTR-3CDS	ENST00000574176	ENST00000458705		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
3UTR-3CDS	ENST00000574176	ENST00000469037		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
3UTR-intron	ENST00000574176	ENST00000476504		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
3UTR-intron	ENST00000574176	ENST00000307441		TCGA	LD	BLCA	TCGA-GV-A3JZ-01A	URI1	chr19	30496615	+	ZNF33A	chr10	38343306	+
5CDS-intron	ENST00000608083	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000541130	ENST00000465508		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000541130	ENST00000349363		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000541130	ENST00000377577		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000541130	ENST00000294401		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000541130	ENST00000542246		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000541130	ENST00000377573		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	ACOT7	chr1	6378552	-	DNAJC11	chr1	6727870	-
5CDS-5UTR	ENST00000510496	ENST00000504022		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000510496	ENST00000274361		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000510496	ENST00000506364		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000389156	ENST00000504022		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000389156	ENST00000274361		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000389156	ENST00000506364		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000380515	ENST00000504022		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000380515	ENST00000274361		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
5CDS-5UTR	ENST00000380515	ENST00000506364		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FAM169A	chr5	74134790	-	ANKRD31	chr5	74414122	-
Frame-shit	ENST00000370256	ENST00000370272		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000370256	ENST00000370267		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
5CDS-intron	ENST00000370256	ENST00000481583		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000260506	ENST00000370272		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000260506	ENST00000370267		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
5CDS-intron	ENST00000260506	ENST00000481583		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000271234	ENST00000370272		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000271234	ENST00000370267		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
5CDS-intron	ENST00000271234	ENST00000481583		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000604705	ENST00000370272		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000604705	ENST00000370267		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
5CDS-intron	ENST00000604705	ENST00000481583		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000370253	ENST00000370272		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
Frame-shit	ENST00000370253	ENST00000370267		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
5CDS-intron	ENST00000370253	ENST00000481583		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	FNBP1L	chr1	93965140	+	DR1	chr1	93819465	+
In-frame	ENST00000265361	ENST00000435819		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
In-frame	ENST00000265361	ENST00000309881		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
In-frame	ENST00000265361	ENST00000534394		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000441109		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000394788		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000447544		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000432207		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000544133		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000538969		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000265361	ENST00000433696		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000544525	ENST00000435819		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000544525	ENST00000309881		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000544525	ENST00000534394		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000441109		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000394788		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000447544		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000432207		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000544133		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000538969		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000544525	ENST00000433696		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000419255	ENST00000435819		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000419255	ENST00000309881		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000419255	ENST00000534394		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000441109		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000394788		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000447544		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000432207		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000544133		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000538969		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000419255	ENST00000433696		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000536800	ENST00000435819		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000536800	ENST00000309881		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000536800	ENST00000534394		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000441109		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000394788		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000447544		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000432207		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000544133		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000538969		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5CDS-intron	ENST00000536800	ENST00000433696		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-3CDS	ENST00000487621	ENST00000435819		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-3CDS	ENST00000487621	ENST00000309881		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-3CDS	ENST00000487621	ENST00000534394		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000441109		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000394788		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000447544		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000432207		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000544133		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000538969		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
5UTR-intron	ENST00000487621	ENST00000433696		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80293722	+
Frame-shit	ENST00000301634	ENST00000389840		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
In-frame	ENST00000301634	ENST00000585328		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
5CDS-5UTR	ENST00000301634	ENST00000586052		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
Frame-shit	ENST00000405273	ENST00000389840		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
In-frame	ENST00000405273	ENST00000585328		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
5CDS-5UTR	ENST00000405273	ENST00000586052		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-3CDS	ENST00000588734	ENST00000389840		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-3CDS	ENST00000588734	ENST00000585328		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-5UTR	ENST00000588734	ENST00000586052		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
Frame-shit	ENST00000590862	ENST00000389840		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
In-frame	ENST00000590862	ENST00000585328		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
5CDS-5UTR	ENST00000590862	ENST00000586052		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-3CDS	ENST00000590430	ENST00000389840		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-3CDS	ENST00000590430	ENST00000585328		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-5UTR	ENST00000590430	ENST00000586052		TCGA	LD	BLCA	TCGA-GV-A3QF-01A	TK1	chr17	76171131	-	DNAH17	chr17	76423189	-
intron-3CDS	ENST00000309964	ENST00000251566		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000309964	ENST00000420231		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000309964	ENST00000547910		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000381322	ENST00000251566		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000381322	ENST00000420231		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000381322	ENST00000547910		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000513440	ENST00000251566		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000513440	ENST00000420231		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000513440	ENST00000547910		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000506923	ENST00000251566		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000506923	ENST00000420231		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000506923	ENST00000547910		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	CLOCK	chr4	56412649	-	UGT2A3	chr4	69798477	-
In-frame	ENST00000541730	ENST00000378454		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	MBOAT1	chr6	20126748	-	DCDC2	chr6	24302272	-
5CDS-intron	ENST00000541730	ENST00000378450		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	MBOAT1	chr6	20126748	-	DCDC2	chr6	24302272	-
In-frame	ENST00000324607	ENST00000378454		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	MBOAT1	chr6	20126748	-	DCDC2	chr6	24302272	-
5CDS-intron	ENST00000324607	ENST00000378450		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	MBOAT1	chr6	20126748	-	DCDC2	chr6	24302272	-
In-frame	ENST00000536798	ENST00000378454		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	MBOAT1	chr6	20126748	-	DCDC2	chr6	24302272	-
5CDS-intron	ENST00000536798	ENST00000378450		TCGA	LD	BLCA	TCGA-GV-A3QH-01A	MBOAT1	chr6	20126748	-	DCDC2	chr6	24302272	-
Frame-shit	ENST00000397843	ENST00000527524		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
Frame-shit	ENST00000397843	ENST00000438375		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
5CDS-intron	ENST00000397843	ENST00000527130		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
Frame-shit	ENST00000356641	ENST00000527524		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
Frame-shit	ENST00000356641	ENST00000438375		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
5CDS-intron	ENST00000356641	ENST00000527130		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
Frame-shit	ENST00000532993	ENST00000527524		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
Frame-shit	ENST00000532993	ENST00000438375		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
5CDS-intron	ENST00000532993	ENST00000527130		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	ARHGEF12	chr11	120302620	+	GRIK4	chr11	120673402	+
3UTR-3CDS	ENST00000472729	ENST00000324331		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	COMMD1	chr2	62228117	+	FARS2	chr6	5771524	+
3UTR-3CDS	ENST00000472729	ENST00000274680		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	COMMD1	chr2	62228117	+	FARS2	chr6	5771524	+
In-frame	ENST00000311832	ENST00000324331		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	COMMD1	chr2	62228117	+	FARS2	chr6	5771524	+
Frame-shit	ENST00000311832	ENST00000274680		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	COMMD1	chr2	62228117	+	FARS2	chr6	5771524	+
In-frame	ENST00000538736	ENST00000324331		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	COMMD1	chr2	62228117	+	FARS2	chr6	5771524	+
Frame-shit	ENST00000538736	ENST00000274680		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	COMMD1	chr2	62228117	+	FARS2	chr6	5771524	+
intron-3CDS	ENST00000553896	ENST00000229239		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
intron-5UTR	ENST00000553896	ENST00000396856		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
intron-5UTR	ENST00000553896	ENST00000396861		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
intron-5UTR	ENST00000553896	ENST00000396859		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
intron-5UTR	ENST00000553896	ENST00000396858		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-3CDS	ENST00000250383	ENST00000229239		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000250383	ENST00000396856		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000250383	ENST00000396861		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000250383	ENST00000396859		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000250383	ENST00000396858		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-3CDS	ENST00000344777	ENST00000229239		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000344777	ENST00000396856		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000344777	ENST00000396861		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000344777	ENST00000396859		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
5UTR-5UTR	ENST00000344777	ENST00000396858		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DHRS2	chr14	24105981	+	GAPDH	chr12	6645660	+
intron-3CDS	ENST00000376460	ENST00000376503		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DOCK9	chr13	99738477	-	SLC15A1	chr13	99362165	-
In-frame	ENST00000339416	ENST00000376503		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DOCK9	chr13	99738477	-	SLC15A1	chr13	99362165	-
intron-3CDS	ENST00000448493	ENST00000376503		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DOCK9	chr13	99738477	-	SLC15A1	chr13	99362165	-
intron-3CDS	ENST00000442173	ENST00000376503		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DOCK9	chr13	99738477	-	SLC15A1	chr13	99362165	-
intron-3CDS	ENST00000461998	ENST00000376503		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	DOCK9	chr13	99738477	-	SLC15A1	chr13	99362165	-
intron-3CDS	ENST00000590550	ENST00000341191		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000590550	ENST00000545749		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000590550	ENST00000440527		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-3CDS	ENST00000434436	ENST00000341191		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000434436	ENST00000545749		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000434436	ENST00000440527		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-3CDS	ENST00000592012	ENST00000341191		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000592012	ENST00000545749		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000592012	ENST00000440527		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-3CDS	ENST00000156825	ENST00000341191		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000156825	ENST00000545749		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000156825	ENST00000440527		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-3CDS	ENST00000585967	ENST00000341191		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000585967	ENST00000545749		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-5UTR	ENST00000585967	ENST00000440527		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	MBD3	chr19	1577143	-	ZNF823	chr19	11836142	-
intron-3CDS	ENST00000399951	ENST00000301332		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-intron	ENST00000399951	ENST00000301331		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-3UTR	ENST00000399951	ENST00000531423		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-3CDS	ENST00000399953	ENST00000301332		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-intron	ENST00000399953	ENST00000301331		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-3UTR	ENST00000399953	ENST00000531423		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-3CDS	ENST00000405960	ENST00000301332		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-intron	ENST00000405960	ENST00000301331		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-3UTR	ENST00000405960	ENST00000531423		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	NPRL3	chr16	173432	-	KIFC2	chr8	145697593	+
intron-3CDS	ENST00000259605	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000259605	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000353739	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000353739	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000357058	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000357058	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000350199	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000350199	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000377885	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377885	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000377877	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000377877	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000491349	ENST00000358127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000523241		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000520154		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000377852		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000377853		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000522003		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000520281		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000414447		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000523145		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000446742		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000491349	ENST00000377847		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	RNF38	chr9	36424610	-	PAX5	chr9	36923481	-
intron-intron	ENST00000446982	ENST00000555545		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	SYT16	chr14	62437029	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000446982	ENST00000261245		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	SYT16	chr14	62437029	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000446982	ENST00000539616		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	SYT16	chr14	62437029	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000430451	ENST00000555545		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	SYT16	chr14	62437029	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000430451	ENST00000261245		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	SYT16	chr14	62437029	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000430451	ENST00000539616		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	SYT16	chr14	62437029	+	MNAT1	chr14	61346432	+
5UTR-3CDS	ENST00000341567	ENST00000359626		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	TMEM248	chr7	66386448	+	TYW1	chr7	66548417	+
5UTR-intron	ENST00000341567	ENST00000491969		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	TMEM248	chr7	66386448	+	TYW1	chr7	66548417	+
3UTR-intron	ENST00000494757	ENST00000394126		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
3UTR-intron	ENST00000494757	ENST00000356271		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
3UTR-intron	ENST00000494757	ENST00000394128		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
3UTR-intron	ENST00000494757	ENST00000394127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
3UTR-intron	ENST00000494757	ENST00000501516		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
3UTR-intron	ENST00000494757	ENST00000479829		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000323571	ENST00000394126		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000323571	ENST00000356271		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000323571	ENST00000394128		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000323571	ENST00000394127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000323571	ENST00000501516		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000323571	ENST00000479829		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000585043	ENST00000394126		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000585043	ENST00000356271		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000585043	ENST00000394128		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000585043	ENST00000394127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000585043	ENST00000501516		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000585043	ENST00000479829		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000394103	ENST00000394126		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000394103	ENST00000356271		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000394103	ENST00000394128		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000394103	ENST00000394127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000394103	ENST00000501516		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000394103	ENST00000479829		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000536600	ENST00000394126		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000536600	ENST00000356271		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000536600	ENST00000394128		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000536600	ENST00000394127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000536600	ENST00000501516		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
5UTR-intron	ENST00000536600	ENST00000479829		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
intron-intron	ENST00000583130	ENST00000394126		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
intron-intron	ENST00000583130	ENST00000356271		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
intron-intron	ENST00000583130	ENST00000394128		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
intron-intron	ENST00000583130	ENST00000394127		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
intron-intron	ENST00000583130	ENST00000501516		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
intron-intron	ENST00000583130	ENST00000479829		TCGA	LD	BLCA	TCGA-GV-A3QI-01A	WIPF2	chr17	38375744	+	MED24	chr17	38213887	-
Frame-shit	ENST00000398645	ENST00000398606		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
Frame-shit	ENST00000398645	ENST00000398603		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
5CDS-intron	ENST00000398645	ENST00000498765		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
Frame-shit	ENST00000529006	ENST00000398606		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
Frame-shit	ENST00000529006	ENST00000398603		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
5CDS-intron	ENST00000529006	ENST00000498765		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-3CDS	ENST00000526258	ENST00000398606		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-3CDS	ENST00000526258	ENST00000398603		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-intron	ENST00000526258	ENST00000498765		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-3CDS	ENST00000308783	ENST00000398606		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-3CDS	ENST00000308783	ENST00000398603		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-intron	ENST00000308783	ENST00000498765		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-3CDS	ENST00000530342	ENST00000398606		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-3CDS	ENST00000530342	ENST00000398603		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
intron-intron	ENST00000530342	ENST00000498765		TCGA	LD	BLCA	TCGA-GV-A3QK-01B	KDM2A	chr11	66888829	+	GSTP1	chr11	67351605	+
Frame-shit	ENST00000357718	ENST00000366933		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
5CDS-intron	ENST00000357718	ENST00000471021		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
3UTR-3CDS	ENST00000602817	ENST00000366933		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
3UTR-intron	ENST00000602817	ENST00000471021		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
Frame-shit	ENST00000344416	ENST00000366933		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
5CDS-intron	ENST00000344416	ENST00000471021		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
Frame-shit	ENST00000456111	ENST00000366933		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
5CDS-intron	ENST00000456111	ENST00000471021		TCGA	LD	BLCA	TCGA-GV-A40E-01A	ANXA8	chr10	48255449	-	SPATA17	chr1	217822224	+
5CDS-5UTR	ENST00000227756	ENST00000361523		TCGA	LD	BLCA	TCGA-GV-A40E-01A	GALNT18	chr11	11454168	-	BECN1	chr17	40975897	-
5CDS-5UTR	ENST00000227756	ENST00000590099		TCGA	LD	BLCA	TCGA-GV-A40E-01A	GALNT18	chr11	11454168	-	BECN1	chr17	40975897	-
5CDS-5UTR	ENST00000227756	ENST00000438274		TCGA	LD	BLCA	TCGA-GV-A40E-01A	GALNT18	chr11	11454168	-	BECN1	chr17	40975897	-
intron-5UTR	ENST00000526064	ENST00000361523		TCGA	LD	BLCA	TCGA-GV-A40E-01A	GALNT18	chr11	11454168	-	BECN1	chr17	40975897	-
intron-5UTR	ENST00000526064	ENST00000590099		TCGA	LD	BLCA	TCGA-GV-A40E-01A	GALNT18	chr11	11454168	-	BECN1	chr17	40975897	-
intron-5UTR	ENST00000526064	ENST00000438274		TCGA	LD	BLCA	TCGA-GV-A40E-01A	GALNT18	chr11	11454168	-	BECN1	chr17	40975897	-
Frame-shit	ENST00000216181	ENST00000406386		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
Frame-shit	ENST00000216181	ENST00000407319		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
Frame-shit	ENST00000216181	ENST00000403663		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000475726	ENST00000406386		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000475726	ENST00000407319		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000475726	ENST00000403663		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000401701	ENST00000406386		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000401701	ENST00000407319		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000401701	ENST00000403663		TCGA	LD	BLCA	TCGA-GV-A40E-01A	MYH9	chr22	36701976	-	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000408388	ENST00000368407		TCGA	LD	BLCA	TCGA-GV-A40E-01A	PVT1	chr8	128903244	+	EFNA1	chr1	155103815	+
intron-3CDS	ENST00000408388	ENST00000368406		TCGA	LD	BLCA	TCGA-GV-A40E-01A	PVT1	chr8	128903244	+	EFNA1	chr1	155103815	+
intron-3UTR	ENST00000408388	ENST00000469878		TCGA	LD	BLCA	TCGA-GV-A40E-01A	PVT1	chr8	128903244	+	EFNA1	chr1	155103815	+
Frame-shit	ENST00000396863	ENST00000341197		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000396863	ENST00000423191		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000396863	ENST00000372999		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000396863	ENST00000358131		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
5CDS-intron	ENST00000396863	ENST00000435864		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000217026	ENST00000341197		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000217026	ENST00000423191		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000217026	ENST00000372999		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
Frame-shit	ENST00000217026	ENST00000358131		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
5CDS-intron	ENST00000217026	ENST00000435864		TCGA	LD	BLCA	TCGA-GV-A40G-01A	MYBL2	chr20	42315712	+	TOX2	chr20	42635187	+
In-frame	ENST00000339282	ENST00000264828		TCGA	LD	BLCA	TCGA-GV-A40G-01A	ZNF564	chr19	12662144	-	COL5A3	chr19	10112557	-
In-frame	ENST00000416136	ENST00000264828		TCGA	LD	BLCA	TCGA-GV-A40G-01A	ZNF564	chr19	12662144	-	COL5A3	chr19	10112557	-
In-frame	ENST00000480945	ENST00000375838		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	DDI2	chr1	15978390	+	DNAJC16	chr1	15870894	+
In-frame	ENST00000480945	ENST00000375847		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	DDI2	chr1	15978390	+	DNAJC16	chr1	15870894	+
In-frame	ENST00000480945	ENST00000375849		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	DDI2	chr1	15978390	+	DNAJC16	chr1	15870894	+
5CDS-intron	ENST00000480945	ENST00000483270		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	DDI2	chr1	15978390	+	DNAJC16	chr1	15870894	+
In-frame	ENST00000462484	ENST00000421905		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000462484	ENST00000221462		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
5CDS-intron	ENST00000462484	ENST00000496125		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000334856	ENST00000421905		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000334856	ENST00000221462		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
5CDS-intron	ENST00000334856	ENST00000496125		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000460843	ENST00000421905		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000460843	ENST00000221462		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
5CDS-intron	ENST00000460843	ENST00000496125		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
3UTR-3CDS	ENST00000371394	ENST00000421905		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
3UTR-3CDS	ENST00000371394	ENST00000221462		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
3UTR-intron	ENST00000371394	ENST00000496125		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	EHMT1	chr9	140622981	+	PPP1R37	chr19	45641772	+
intron-3CDS	ENST00000560626	ENST00000333371		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-5UTR	ENST00000560626	ENST00000535843		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000560626	ENST00000535906		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000560626	ENST00000557358		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-3CDS	ENST00000558305	ENST00000333371		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-5UTR	ENST00000558305	ENST00000535843		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000558305	ENST00000535906		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000558305	ENST00000557358		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
5UTR-3CDS	ENST00000567337	ENST00000333371		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
5UTR-5UTR	ENST00000567337	ENST00000535843		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
5UTR-intron	ENST00000567337	ENST00000535906		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
5UTR-intron	ENST00000567337	ENST00000557358		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-3CDS	ENST00000312493	ENST00000333371		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-5UTR	ENST00000312493	ENST00000535843		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000312493	ENST00000535906		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000312493	ENST00000557358		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	PEAK1	chr15	77576225	-	VPS33B	chr15	91561115	-
intron-intron	ENST00000476901	ENST00000348697		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
intron-intron	ENST00000476901	ENST00000402984		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
intron-intron	ENST00000476901	ENST00000262722		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
intron-intron	ENST00000476901	ENST00000327858		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
intron-intron	ENST00000476901	ENST00000442170		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
intron-intron	ENST00000476901	ENST00000340923		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
intron-intron	ENST00000476901	ENST00000476366		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000348697		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000402984		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000262722		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000327858		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000442170		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000340923		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000290846	ENST00000476366		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000348697		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000402984		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000262722		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000327858		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000442170		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000340923		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000381019	ENST00000476366		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000348697		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000402984		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000262722		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000327858		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000442170		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000340923		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-intron	ENST00000424260	ENST00000476366		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	TRMU	chr22	46739265	+	FBLN1	chr22	45958792	+
5CDS-5UTR	ENST00000302313	ENST00000397010		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000309576		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000397015		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000397012		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000397026		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000397000		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000539812		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000302313	ENST00000287820		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000397010		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000309576		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000397015		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000397012		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000397026		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000397000		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000539812		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5UTR-5UTR	ENST00000418020	ENST00000287820		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000397010		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000309576		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000397015		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000397012		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000397026		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000397000		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000539812		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000544962	ENST00000287820		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000397010		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000309576		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000397015		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000397012		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000397026		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000397000		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000539812		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000396258	ENST00000287820		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000397010		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000309576		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000397015		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000397012		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000397026		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000397000		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000539812		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
intron-5UTR	ENST00000466405	ENST00000287820		TCGA	LD	BLCA	TCGA-H4-A2HO-01A	WDR48	chr3	39104681	+	PPARG	chr3	12421203	+
Frame-shit	ENST00000262367	ENST00000161006		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	CREBBP	chr16	3900298	-	PRSS22	chr16	2904023	-
Frame-shit	ENST00000262367	ENST00000571228		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	CREBBP	chr16	3900298	-	PRSS22	chr16	2904023	-
5CDS-intron	ENST00000262367	ENST00000574768		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	CREBBP	chr16	3900298	-	PRSS22	chr16	2904023	-
Frame-shit	ENST00000382070	ENST00000161006		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	CREBBP	chr16	3900298	-	PRSS22	chr16	2904023	-
Frame-shit	ENST00000382070	ENST00000571228		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	CREBBP	chr16	3900298	-	PRSS22	chr16	2904023	-
5CDS-intron	ENST00000382070	ENST00000574768		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	CREBBP	chr16	3900298	-	PRSS22	chr16	2904023	-
intron-3CDS	ENST00000379357	ENST00000297431		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000379357	ENST00000545943		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000379357	ENST00000447452		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000379357	ENST00000485726		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000511313	ENST00000297431		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000511313	ENST00000545943		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000511313	ENST00000447452		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000511313	ENST00000485726		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000504157	ENST00000297431		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000504157	ENST00000545943		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000504157	ENST00000447452		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000504157	ENST00000485726		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000513438	ENST00000297431		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000513438	ENST00000545943		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000513438	ENST00000447452		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
intron-intron	ENST00000513438	ENST00000485726		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	POLR2J3	chr7	102207444	-	ORC5	chr7	103777340	-
Frame-shit	ENST00000566780	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
In-frame	ENST00000566780	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000566780	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000566780	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000566780	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000566780	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000406884	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000406884	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000406884	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000406884	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000406884	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000406884	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000539474	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000539474	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000539474	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000539474	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000539474	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000539474	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000402655	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000402655	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000402655	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000402655	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000402655	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000402655	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000408984	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
In-frame	ENST00000408984	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000408984	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000408984	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000408984	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000408984	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000355860	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000355860	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000355860	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000355860	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000355860	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000355860	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000565791	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000565791	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000565791	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000565791	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000565791	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000565791	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000569818	ENST00000564085		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000569818	ENST00000268533		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000569818	ENST00000568787		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000569818	ENST00000437314		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000569818	ENST00000563839		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000569818	ENST00000564031		TCGA	LD	BLCA	TCGA-H4-A2HQ-01A	WWOX	chr16	78458952	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000449576	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000449576	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000449576	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000449576	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000449576	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-5UTR	ENST00000449576	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000396099	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000396099	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000396099	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000396099	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000396099	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-5UTR	ENST00000396099	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000425416	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000425416	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000425416	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000425416	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000425416	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-5UTR	ENST00000425416	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000256720	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000256720	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000256720	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000256720	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000256720	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-5UTR	ENST00000256720	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-3CDS	ENST00000396097	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-3CDS	ENST00000396097	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000396097	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000396097	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000396097	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-5UTR	ENST00000396097	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-3CDS	ENST00000404113	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-3CDS	ENST00000404113	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000404113	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000404113	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000404113	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-5UTR	ENST00000404113	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-3CDS	ENST00000464517	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-3CDS	ENST00000464517	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000464517	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000464517	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-intron	ENST00000464517	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
intron-5UTR	ENST00000464517	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000396098	ENST00000379300		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
Frame-shit	ENST00000396098	ENST00000356436		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000396098	ENST00000379307		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000396098	ENST00000343141		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-intron	ENST00000396098	ENST00000607658		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
5CDS-5UTR	ENST00000396098	ENST00000607532		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	LPIN1	chr2	11905859	+	TBC1D7	chr6	13325406	-
In-frame	ENST00000397010	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000397010	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000309576	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000309576	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000397015	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000397015	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000397012	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000397012	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000397026	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000397026	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000397000	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000397000	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000539812	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000539812	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
In-frame	ENST00000287820	ENST00000354760		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-intron	ENST00000287820	ENST00000466315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	PPARG	chr3	12422990	+	CRYBA4	chr22	27019198	+
5CDS-5UTR	ENST00000436008	ENST00000454859		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000436008	ENST00000474289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000436008	ENST00000528402		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000436008	ENST00000454591		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000436008	ENST00000368291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000436008	ENST00000309620		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000436008	ENST00000430841		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000436008	ENST00000368289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000436008	ENST00000531967		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000436008	ENST00000488087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000454859		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000474289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000406686	ENST00000528402		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000406686	ENST00000454591		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000368291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000309620		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000430841		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000368289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000406686	ENST00000531967		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000406686	ENST00000488087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000454859		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000474289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000380302	ENST00000528402		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000380302	ENST00000454591		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000368291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000309620		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000430841		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000368289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000380302	ENST00000531967		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000380302	ENST00000488087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000454859		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000474289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000490273	ENST00000528402		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000490273	ENST00000454591		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000368291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000309620		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000430841		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000368289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000490273	ENST00000531967		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000490273	ENST00000488087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000454859		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000474289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-intron	ENST00000380298	ENST00000528402		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-intron	ENST00000380298	ENST00000454591		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000368291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000309620		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000430841		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000368289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000380298	ENST00000531967		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-intron	ENST00000380298	ENST00000488087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000454859		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000474289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-intron	ENST00000433689	ENST00000528402		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-intron	ENST00000433689	ENST00000454591		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000368291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000309620		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000430841		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000368289		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-5UTR	ENST00000433689	ENST00000531967		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
intron-intron	ENST00000433689	ENST00000488087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SLC22A23	chr6	3324068	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000296695	ENST00000510432		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SPINK1	chr5	147207585	-	C5orf46	chr5	147281336	-
5CDS-5UTR	ENST00000296695	ENST00000318315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SPINK1	chr5	147207585	-	C5orf46	chr5	147281336	-
5CDS-5UTR	ENST00000296695	ENST00000515291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SPINK1	chr5	147207585	-	C5orf46	chr5	147281336	-
intron-5UTR	ENST00000510027	ENST00000510432		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SPINK1	chr5	147207585	-	C5orf46	chr5	147281336	-
intron-5UTR	ENST00000510027	ENST00000318315		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SPINK1	chr5	147207585	-	C5orf46	chr5	147281336	-
intron-5UTR	ENST00000510027	ENST00000515291		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SPINK1	chr5	147207585	-	C5orf46	chr5	147281336	-
intron-intron	ENST00000326956	ENST00000374553		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
intron-intron	ENST00000326956	ENST00000374552		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
intron-intron	ENST00000326956	ENST00000524573		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
intron-intron	ENST00000326956	ENST00000525810		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
intron-3UTR	ENST00000326956	ENST00000527388		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
intron-intron	ENST00000326956	ENST00000502251		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
intron-intron	ENST00000326956	ENST00000338901		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-intron	ENST00000417664	ENST00000374553		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-intron	ENST00000417664	ENST00000374552		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-intron	ENST00000417664	ENST00000524573		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-intron	ENST00000417664	ENST00000525810		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-3UTR	ENST00000417664	ENST00000527388		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-intron	ENST00000417664	ENST00000502251		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5UTR-intron	ENST00000417664	ENST00000338901		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371320	ENST00000374553		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371320	ENST00000374552		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371320	ENST00000524573		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371320	ENST00000525810		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000371320	ENST00000527388		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371320	ENST00000502251		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371320	ENST00000338901		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371319	ENST00000374553		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371319	ENST00000374552		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371319	ENST00000524573		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371319	ENST00000525810		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000371319	ENST00000527388		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371319	ENST00000502251		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000371319	ENST00000338901		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000357475	ENST00000374553		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000357475	ENST00000374552		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000357475	ENST00000524573		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000357475	ENST00000525810		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000357475	ENST00000527388		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000357475	ENST00000502251		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
5CDS-intron	ENST00000357475	ENST00000338901		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	SSBP3	chr1	54867534	-	EDA	chrX	69080688	+
Frame-shit	ENST00000300150	ENST00000398992		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	STX3	chr11	59560987	+	OOSP1	chr11	59710320	+
Frame-shit	ENST00000337979	ENST00000398992		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	STX3	chr11	59560987	+	OOSP1	chr11	59710320	+
Frame-shit	ENST00000535361	ENST00000398992		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	STX3	chr11	59560987	+	OOSP1	chr11	59710320	+
Frame-shit	ENST00000437946	ENST00000398992		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	STX3	chr11	59560987	+	OOSP1	chr11	59710320	+
Frame-shit	ENST00000529177	ENST00000398992		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	STX3	chr11	59560987	+	OOSP1	chr11	59710320	+
Frame-shit	ENST00000599227	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000599227	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000599227	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000599227	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000599227	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
In-frame	ENST00000269829	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000269829	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000269829	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000269829	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000269829	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
Frame-shit	ENST00000594384	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000594384	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000594384	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000594384	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000594384	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
3UTR-3CDS	ENST00000596597	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
3UTR-5UTR	ENST00000596597	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
3UTR-5UTR	ENST00000596597	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
3UTR-5UTR	ENST00000596597	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
3UTR-intron	ENST00000596597	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
Frame-shit	ENST00000596825	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596825	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596825	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596825	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000596825	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
In-frame	ENST00000333581	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000333581	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000333581	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000333581	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000333581	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5UTR-3CDS	ENST00000599953	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000599953	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000599953	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000599953	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5UTR-intron	ENST00000599953	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
In-frame	ENST00000596652	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596652	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596652	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596652	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000596652	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000600044	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000600044	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000600044	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000600044	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-intron	ENST00000600044	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000600220	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000600220	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000600220	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000600220	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-intron	ENST00000600220	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
In-frame	ENST00000596929	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596929	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596929	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000596929	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000596929	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
In-frame	ENST00000595981	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000595981	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000595981	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-5UTR	ENST00000595981	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
5CDS-intron	ENST00000595981	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000415203	ENST00000263284		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000415203	ENST00000595358		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000415203	ENST00000536603		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000415203	ENST00000594087		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
intron-intron	ENST00000415203	ENST00000601763		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF544	chr19	58758160	+	CCDC61	chr19	46506266	+
Frame-shit	ENST00000563630	ENST00000438132		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000563630	ENST00000542263		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000563630	ENST00000417362		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000563630	ENST00000251143		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000563630	ENST00000543152		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000563630	ENST00000448695		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000563630	ENST00000544275		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000563630	ENST00000538853		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000431526	ENST00000438132		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000431526	ENST00000542263		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000431526	ENST00000417362		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000431526	ENST00000251143		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000431526	ENST00000543152		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000431526	ENST00000448695		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000431526	ENST00000544275		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000431526	ENST00000538853		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000562103	ENST00000438132		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000562103	ENST00000542263		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000562103	ENST00000417362		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000562103	ENST00000251143		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000562103	ENST00000543152		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
Frame-shit	ENST00000562103	ENST00000448695		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000562103	ENST00000544275		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000562103	ENST00000538853		TCGA	LD	BLCA	TCGA-HQ-A2OE-01A	ZNF598	chr16	2059525	-	C16orf62	chr16	19702675	+
3UTR-3CDS	ENST00000440498	ENST00000336665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	AGAP1-IT1	chr2	236415717	+	AGAP1	chr2	236617823	+
3UTR-3CDS	ENST00000440498	ENST00000304032		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	AGAP1-IT1	chr2	236415717	+	AGAP1	chr2	236617823	+
3UTR-3CDS	ENST00000440498	ENST00000409538		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	AGAP1-IT1	chr2	236415717	+	AGAP1	chr2	236617823	+
3UTR-intron	ENST00000440498	ENST00000428334		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	AGAP1-IT1	chr2	236415717	+	AGAP1	chr2	236617823	+
3UTR-intron	ENST00000440498	ENST00000409457		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	AGAP1-IT1	chr2	236415717	+	AGAP1	chr2	236617823	+
Frame-shit	ENST00000431231	ENST00000439730		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000431231	ENST00000576910		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000431231	ENST00000393456		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000431231	ENST00000415811		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
In-frame	ENST00000431231	ENST00000575949		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000431231	ENST00000225567		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
3UTR-3CDS	ENST00000437668	ENST00000439730		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
3UTR-3CDS	ENST00000437668	ENST00000576910		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
3UTR-3CDS	ENST00000437668	ENST00000393456		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
3UTR-3CDS	ENST00000437668	ENST00000415811		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
3UTR-3CDS	ENST00000437668	ENST00000575949		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
3UTR-3CDS	ENST00000437668	ENST00000225567		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
intron-3CDS	ENST00000582409	ENST00000439730		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
intron-3CDS	ENST00000582409	ENST00000576910		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
intron-3CDS	ENST00000582409	ENST00000393456		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
intron-3CDS	ENST00000582409	ENST00000415811		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
intron-3CDS	ENST00000582409	ENST00000575949		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
intron-3CDS	ENST00000582409	ENST00000225567		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000443378	ENST00000439730		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000443378	ENST00000576910		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000443378	ENST00000393456		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000443378	ENST00000415811		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
In-frame	ENST00000443378	ENST00000575949		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000443378	ENST00000225567		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	ARHGAP23	chr17	36656870	+	GOSR2	chr17	45009433	+
Frame-shit	ENST00000309156	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000309156	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000309156	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000309156	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000309156	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000309156	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000309156	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000309156	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000309185	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000309185	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000309185	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000309185	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000309185	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000309185	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000309185	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000309185	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394211	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394211	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394211	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394211	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394211	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394211	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394211	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394211	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-3CDS	ENST00000578702	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-3CDS	ENST00000578702	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-3CDS	ENST00000578702	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-3CDS	ENST00000578702	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-intron	ENST00000578702	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-intron	ENST00000578702	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-intron	ENST00000578702	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-intron	ENST00000578702	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000445327	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000445327	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000445327	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000445327	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000445327	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000445327	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000445327	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000445327	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394209	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394209	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394209	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
Frame-shit	ENST00000394209	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394209	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394209	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394209	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
5CDS-intron	ENST00000394209	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000394204	ENST00000353139		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000394204	ENST00000360679		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000394204	ENST00000394406		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-3CDS	ENST00000394204	ENST00000335166		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000394204	ENST00000416895		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000394204	ENST00000361253		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000394204	ENST00000588142		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
3UTR-intron	ENST00000394204	ENST00000589665		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	GRB7	chr17	37902455	+	ACACA	chr17	35567404	-
intron-3CDS	ENST00000472863	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000472863	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000472863	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000472863	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000472863	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000472863	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000472863	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000498678	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000498678	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000498678	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000498678	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000498678	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000498678	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000498678	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000460160	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000460160	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000460160	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000460160	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000460160	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000460160	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000460160	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000476342	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000476342	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000476342	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000476342	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000476342	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000476342	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000476342	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000552000	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000552000	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000552000	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000552000	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000552000	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000552000	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000552000	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000470495	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000470495	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000470495	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000470495	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000470495	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3CDS	ENST00000470495	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
intron-3UTR	ENST00000470495	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000311626	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000311626	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000311626	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000311626	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000311626	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000311626	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000311626	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
In-frame	ENST00000490677	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
In-frame	ENST00000490677	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
In-frame	ENST00000490677	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
In-frame	ENST00000490677	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
In-frame	ENST00000490677	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
In-frame	ENST00000490677	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000490677	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000485909	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000485909	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000485909	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000485909	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000485909	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000485909	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000485909	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000489475	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000489475	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000489475	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000489475	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000489475	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3CDS	ENST00000489475	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5UTR-3UTR	ENST00000489475	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000465120	ENST00000535772		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000465120	ENST00000344290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000465120	ENST00000351559		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000465120	ENST00000347967		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000465120	ENST00000262410		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000465120	ENST00000340799		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000570299		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000334239		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000446361		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000574436		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000431008		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000571987		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000420682		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000415613		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
5CDS-3UTR	ENST00000465120	ENST00000576518		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	HOXB3	chr17	46651199	-	MAPT	chr17	44068826	+
Frame-shit	ENST00000351111	ENST00000263063		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
Frame-shit	ENST00000351111	ENST00000358107		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
5CDS-5UTR	ENST00000351111	ENST00000488290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
Frame-shit	ENST00000290208	ENST00000263063		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
Frame-shit	ENST00000290208	ENST00000358107		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
5CDS-5UTR	ENST00000290208	ENST00000488290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
Frame-shit	ENST00000414011	ENST00000263063		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
Frame-shit	ENST00000414011	ENST00000358107		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
5CDS-5UTR	ENST00000414011	ENST00000488290		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	MRPL10	chr17	45904003	-	MTPAP	chr10	30611546	-
3UTR-3CDS	ENST00000525037	ENST00000346872		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000394189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000439167		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000535189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000377944		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000377945		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000377952		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000377958		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000346243		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000350532		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000351680		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000467757		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000439016		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000525037	ENST00000583368		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000530173	ENST00000346872		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000394189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000439167		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000535189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000377944		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000377945		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000377952		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000377958		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000346243		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000350532		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000351680		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000467757		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000439016		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000530173	ENST00000583368		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000322157	ENST00000346872		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000394189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000439167		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000535189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000377944		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000377945		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000377952		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000377958		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000346243		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000350532		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000351680		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000467757		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000439016		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000322157	ENST00000583368		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000544660	ENST00000346872		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000394189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000439167		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000535189		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000377944		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000377945		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000377952		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000377958		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000346243		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000350532		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000351680		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000467757		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000439016		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544660	ENST00000583368		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	NPEPPS	chr17	45664710	+	IKZF3	chr17	37949186	-
5UTR-3CDS	ENST00000394395	ENST00000315392		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-5UTR	ENST00000394395	ENST00000493200		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-intron	ENST00000394395	ENST00000539608		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-intron	ENST00000394395	ENST00000444911		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-intron	ENST00000394395	ENST00000394316		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-3CDS	ENST00000586023	ENST00000315392		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-5UTR	ENST00000586023	ENST00000493200		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-intron	ENST00000586023	ENST00000539608		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-intron	ENST00000586023	ENST00000444911		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5UTR-intron	ENST00000586023	ENST00000394316		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-3CDS	ENST00000225396	ENST00000315392		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-5UTR	ENST00000225396	ENST00000493200		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000225396	ENST00000539608		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000225396	ENST00000444911		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000225396	ENST00000394316		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-3CDS	ENST00000417170	ENST00000315392		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-5UTR	ENST00000417170	ENST00000493200		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000417170	ENST00000539608		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000417170	ENST00000444911		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000417170	ENST00000394316		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-3CDS	ENST00000591992	ENST00000315392		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-5UTR	ENST00000591992	ENST00000493200		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000591992	ENST00000539608		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000591992	ENST00000444911		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
intron-intron	ENST00000591992	ENST00000394316		TCGA	LD	BLCA	TCGA-HQ-A2OF-01A	TADA2A	chr17	35767040	+	PLXDC1	chr17	37239793	-
5CDS-3UTR	ENST00000260197	ENST00000562678		TCGA	LD	BLCA	TCGA-HQ-A5ND-01A	SORL1	chr11	121495986	+	DISC1FP1	chr11	90534934	+
intron-3UTR	ENST00000532451	ENST00000562678		TCGA	LD	BLCA	TCGA-HQ-A5ND-01A	SORL1	chr11	121495986	+	DISC1FP1	chr11	90534934	+
5CDS-3UTR	ENST00000525532	ENST00000562678		TCGA	LD	BLCA	TCGA-HQ-A5ND-01A	SORL1	chr11	121495986	+	DISC1FP1	chr11	90534934	+
5CDS-3UTR	ENST00000532694	ENST00000562678		TCGA	LD	BLCA	TCGA-HQ-A5ND-01A	SORL1	chr11	121495986	+	DISC1FP1	chr11	90534934	+
5CDS-3UTR	ENST00000534286	ENST00000562678		TCGA	LD	BLCA	TCGA-HQ-A5ND-01A	SORL1	chr11	121495986	+	DISC1FP1	chr11	90534934	+
5CDS-3UTR	ENST00000527934	ENST00000562678		TCGA	LD	BLCA	TCGA-HQ-A5ND-01A	SORL1	chr11	121495986	+	DISC1FP1	chr11	90534934	+
intron-intron	ENST00000244174	ENST00000286448		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000244174	ENST00000479687		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000244174	ENST00000262640		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000244174	ENST00000460621		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000424344	ENST00000286448		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000424344	ENST00000479687		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000424344	ENST00000262640		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000424344	ENST00000460621		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000369423	ENST00000286448		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000369423	ENST00000479687		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000369423	ENST00000262640		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000369423	ENST00000460621		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000540897	ENST00000286448		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000540897	ENST00000479687		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000540897	ENST00000262640		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000540897	ENST00000460621		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000494962	ENST00000286448		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000494962	ENST00000479687		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000494962	ENST00000262640		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
intron-intron	ENST00000494962	ENST00000460621		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	IL9R	chrX	155227452	+	VAMP7	chrX	155149477	+
5CDS-5UTR	ENST00000253363	ENST00000608990		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	RBM39	chr20	34328746	-	C20orf203	chr20	31239783	-
5CDS-5UTR	ENST00000361162	ENST00000608990		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	RBM39	chr20	34328746	-	C20orf203	chr20	31239783	-
5CDS-5UTR	ENST00000528062	ENST00000608990		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	RBM39	chr20	34328746	-	C20orf203	chr20	31239783	-
5UTR-5UTR	ENST00000407261	ENST00000608990		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	RBM39	chr20	34328746	-	C20orf203	chr20	31239783	-
5CDS-5UTR	ENST00000397370	ENST00000608990		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	RBM39	chr20	34328746	-	C20orf203	chr20	31239783	-
5UTR-5UTR	ENST00000463098	ENST00000608990		TCGA	LD	BLCA	TCGA-HQ-A5NE-01A	RBM39	chr20	34328746	-	C20orf203	chr20	31239783	-
5UTR-3CDS	ENST00000444397	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000444397	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000444397	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-intron	ENST00000444397	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000360694	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000360694	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000360694	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-intron	ENST00000360694	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000418635	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000418635	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000418635	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-intron	ENST00000418635	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
Frame-shit	ENST00000448077	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
Frame-shit	ENST00000448077	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
Frame-shit	ENST00000448077	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5CDS-intron	ENST00000448077	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000337400	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000337400	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000337400	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-intron	ENST00000337400	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000311565	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000311565	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-3CDS	ENST00000311565	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5UTR-intron	ENST00000311565	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
intron-3CDS	ENST00000540939	ENST00000284382		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
intron-3CDS	ENST00000540939	ENST00000538112		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
intron-3CDS	ENST00000540939	ENST00000394113		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
intron-intron	ENST00000540939	ENST00000560944		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	PPARD	chr6	35314927	+	CERS3	chr15	101019683	-
5CDS-5UTR	ENST00000425354	ENST00000371440		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000425354	ENST00000371435		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000425354	ENST00000395961		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000425354	ENST00000434986		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000425354	ENST00000411563		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000394426	ENST00000371440		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000394426	ENST00000371435		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000394426	ENST00000395961		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000394426	ENST00000434986		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000394426	ENST00000411563		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000327550	ENST00000371440		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000327550	ENST00000371435		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000327550	ENST00000395961		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000327550	ENST00000434986		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000327550	ENST00000411563		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000338561	ENST00000371440		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000338561	ENST00000371435		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000338561	ENST00000395961		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000338561	ENST00000434986		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000338561	ENST00000411563		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000543726	ENST00000371440		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000543726	ENST00000371435		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000543726	ENST00000395961		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000543726	ENST00000434986		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000543726	ENST00000411563		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000543762	ENST00000371440		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000543762	ENST00000371435		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000543762	ENST00000395961		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000543762	ENST00000434986		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000543762	ENST00000411563		TCGA	LD	BLCA	TCGA-K4-A3WS-01A	RARG	chr12	53621146	-	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000287647	ENST00000432401		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	FANCD2	chr3	10070405	+	CIDECP	chr3	10059755	-
5CDS-intron	ENST00000383807	ENST00000432401		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	FANCD2	chr3	10070405	+	CIDECP	chr3	10059755	-
5CDS-intron	ENST00000383806	ENST00000432401		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	FANCD2	chr3	10070405	+	CIDECP	chr3	10059755	-
5CDS-intron	ENST00000419585	ENST00000432401		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	FANCD2	chr3	10070405	+	CIDECP	chr3	10059755	-
5CDS-intron	ENST00000431693	ENST00000432401		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	FANCD2	chr3	10070405	+	CIDECP	chr3	10059755	-
intron-intron	ENST00000438741	ENST00000432401		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	FANCD2	chr3	10070405	+	CIDECP	chr3	10059755	-
5UTR-3CDS	ENST00000389760	ENST00000259008		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000389760	ENST00000577598		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-intron	ENST00000389760	ENST00000583837		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000313080	ENST00000259008		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000313080	ENST00000577598		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-intron	ENST00000313080	ENST00000583837		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000591885	ENST00000259008		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000591885	ENST00000577598		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-intron	ENST00000591885	ENST00000583837		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000592378	ENST00000259008		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-3CDS	ENST00000592378	ENST00000577598		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-intron	ENST00000592378	ENST00000583837		TCGA	LD	BLCA	TCGA-K4-A3WU-01B	RHBDF2	chr17	74483794	-	BRIP1	chr17	59820495	-
5UTR-5UTR	ENST00000232125	ENST00000490131		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5UTR-5UTR	ENST00000232125	ENST00000498619		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5UTR-intron	ENST00000232125	ENST00000296154		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000477892	ENST00000490131		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000477892	ENST00000498619		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5CDS-intron	ENST00000477892	ENST00000296154		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000469967	ENST00000490131		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000469967	ENST00000498619		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
5CDS-intron	ENST00000469967	ENST00000296154		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	FAM162A	chr3	122103146	+	CASR	chr3	121972795	+
Frame-shit	ENST00000530927	ENST00000259873		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
In-frame	ENST00000530927	ENST00000506373		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-3UTR	ENST00000530927	ENST00000472229		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000454427		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000477010		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000437247		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000430402		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000489289		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000418070		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000426945		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000468755		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000412843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000327800		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000469397		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000400594		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000451032		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000493769		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000440992		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000412451		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000428224		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000530927	ENST00000472444		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
Frame-shit	ENST00000380815	ENST00000259873		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
In-frame	ENST00000380815	ENST00000506373		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-3UTR	ENST00000380815	ENST00000472229		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000454427		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000477010		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000437247		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000430402		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000489289		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000418070		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000426945		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000468755		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000412843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000327800		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000469397		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000400594		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000451032		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000493769		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000440992		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000412451		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000428224		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000380815	ENST00000472444		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-3CDS	ENST00000467288	ENST00000259873		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-3CDS	ENST00000467288	ENST00000506373		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-3UTR	ENST00000467288	ENST00000472229		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000454427		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000477010		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000437247		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000430402		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000489289		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000418070		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000426945		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000468755		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000412843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000327800		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000469397		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000400594		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000451032		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000493769		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000440992		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000412451		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000428224		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
intron-intron	ENST00000467288	ENST00000472444		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	GMDS	chr6	1726650	-	MRPS18B	chr6	30592660	+
5CDS-intron	ENST00000358065	ENST00000534863		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000358065	ENST00000470751		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000358065	ENST00000272902		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000358065	ENST00000383843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000358065	ENST00000458465		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000358065	ENST00000405420		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000430981	ENST00000534863		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000430981	ENST00000470751		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000430981	ENST00000272902		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000430981	ENST00000383843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000430981	ENST00000458465		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000430981	ENST00000405420		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000425863	ENST00000534863		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000425863	ENST00000470751		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000425863	ENST00000272902		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000425863	ENST00000383843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000425863	ENST00000458465		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
5CDS-intron	ENST00000425863	ENST00000405420		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-intron	ENST00000462115	ENST00000534863		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-intron	ENST00000462115	ENST00000470751		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-intron	ENST00000462115	ENST00000272902		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-intron	ENST00000462115	ENST00000383843		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-intron	ENST00000462115	ENST00000458465		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-intron	ENST00000462115	ENST00000405420		TCGA	LD	BLCA	TCGA-K4-A3WV-01A	SETMAR	chr3	4345210	+	SUMF1	chr3	4403938	-
intron-5UTR	ENST00000528584	ENST00000397795		TCGA	LD	BLCA	TCGA-K4-A4AB-01B	HERC2P9	chr15	28835406	+	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000528584	ENST00000256552		TCGA	LD	BLCA	TCGA-K4-A4AB-01B	HERC2P9	chr15	28835406	+	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000528584	ENST00000542188		TCGA	LD	BLCA	TCGA-K4-A4AB-01B	HERC2P9	chr15	28835406	+	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000528584	ENST00000559179		TCGA	LD	BLCA	TCGA-K4-A4AB-01B	HERC2P9	chr15	28835406	+	TRPM1	chr15	31369187	-
5CDS-3UTR	ENST00000370008	ENST00000527748		TCGA	LD	BLCA	TCGA-K4-A4AC-01A	STXBP3	chr1	109342927	+	GPR61	chr1	110087933	+
5CDS-intron	ENST00000370008	ENST00000533959		TCGA	LD	BLCA	TCGA-K4-A4AC-01A	STXBP3	chr1	109342927	+	GPR61	chr1	110087933	+
intron-3UTR	ENST00000485167	ENST00000527748		TCGA	LD	BLCA	TCGA-K4-A4AC-01A	STXBP3	chr1	109342927	+	GPR61	chr1	110087933	+
intron-intron	ENST00000485167	ENST00000533959		TCGA	LD	BLCA	TCGA-K4-A4AC-01A	STXBP3	chr1	109342927	+	GPR61	chr1	110087933	+
5UTR-intron	ENST00000368346	ENST00000392414		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	ASH1L	chr1	155531944	-	PKLR	chr1	155271207	-
5UTR-5UTR	ENST00000368346	ENST00000342741		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	ASH1L	chr1	155531944	-	PKLR	chr1	155271207	-
5UTR-intron	ENST00000392403	ENST00000392414		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	ASH1L	chr1	155531944	-	PKLR	chr1	155271207	-
5UTR-5UTR	ENST00000392403	ENST00000342741		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	ASH1L	chr1	155531944	-	PKLR	chr1	155271207	-
5UTR-intron	ENST00000548830	ENST00000392414		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	ASH1L	chr1	155531944	-	PKLR	chr1	155271207	-
5UTR-5UTR	ENST00000548830	ENST00000342741		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	ASH1L	chr1	155531944	-	PKLR	chr1	155271207	-
5CDS-3UTR	ENST00000416691	ENST00000490577		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	COG6	chr13	40239291	+	DLEU1	chr13	51066787	+
5CDS-intron	ENST00000416691	ENST00000378180		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	COG6	chr13	40239291	+	DLEU1	chr13	51066787	+
5CDS-3UTR	ENST00000455146	ENST00000490577		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	COG6	chr13	40239291	+	DLEU1	chr13	51066787	+
5CDS-intron	ENST00000455146	ENST00000378180		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	COG6	chr13	40239291	+	DLEU1	chr13	51066787	+
intron-3UTR	ENST00000465775	ENST00000490577		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	COG6	chr13	40239291	+	DLEU1	chr13	51066787	+
intron-intron	ENST00000465775	ENST00000378180		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	COG6	chr13	40239291	+	DLEU1	chr13	51066787	+
5CDS-5UTR	ENST00000275364	ENST00000337990		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000275364	ENST00000545618		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000275364	ENST00000447788		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000275364	ENST00000374839		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000275364	ENST00000488608		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-5UTR	ENST00000544127	ENST00000337990		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000544127	ENST00000545618		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000544127	ENST00000447788		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000544127	ENST00000374839		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
5CDS-intron	ENST00000544127	ENST00000488608		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-5UTR	ENST00000491117	ENST00000337990		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000491117	ENST00000545618		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000491117	ENST00000447788		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000491117	ENST00000374839		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000491117	ENST00000488608		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-5UTR	ENST00000407904	ENST00000337990		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407904	ENST00000545618		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407904	ENST00000447788		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407904	ENST00000374839		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407904	ENST00000488608		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-5UTR	ENST00000407653	ENST00000337990		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407653	ENST00000545618		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407653	ENST00000447788		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407653	ENST00000374839		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000407653	ENST00000488608		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-5UTR	ENST00000396960	ENST00000337990		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000396960	ENST00000545618		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000396960	ENST00000447788		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000396960	ENST00000374839		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
intron-intron	ENST00000396960	ENST00000488608		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	GNA12	chr7	2883487	-	ZC4H2	chrX	64142123	-
In-frame	ENST00000395811	ENST00000268711		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000395811	ENST00000580462		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000395811	ENST00000585041		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
In-frame	ENST00000444976	ENST00000268711		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000444976	ENST00000580462		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000444976	ENST00000585041		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
In-frame	ENST00000395804	ENST00000268711		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000395804	ENST00000580462		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000395804	ENST00000585041		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
In-frame	ENST00000341712	ENST00000268711		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000341712	ENST00000580462		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000341712	ENST00000585041		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
In-frame	ENST00000395806	ENST00000268711		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000395806	ENST00000580462		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
5CDS-intron	ENST00000395806	ENST00000585041		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
3UTR-3CDS	ENST00000395807	ENST00000268711		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
3UTR-intron	ENST00000395807	ENST00000580462		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
3UTR-intron	ENST00000395807	ENST00000585041		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	MPRIP	chr17	16946285	+	MED9	chr17	17394593	+
Frame-shit	ENST00000255882	ENST00000304621		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
Frame-shit	ENST00000255882	ENST00000317571		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000255882	ENST00000578150		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000255882	ENST00000584250		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000255882	ENST00000577185		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000255882	ENST00000540918		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
In-frame	ENST00000572273	ENST00000304621		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
In-frame	ENST00000572273	ENST00000317571		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000572273	ENST00000578150		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000572273	ENST00000584250		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000572273	ENST00000577185		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000572273	ENST00000540918		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000414196	ENST00000304621		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000414196	ENST00000317571		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000414196	ENST00000578150		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000414196	ENST00000584250		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000414196	ENST00000577185		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000414196	ENST00000540918		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000466162	ENST00000304621		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000466162	ENST00000317571		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000466162	ENST00000578150		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000466162	ENST00000584250		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000466162	ENST00000577185		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000466162	ENST00000540918		TCGA	LD	BLCA	TCGA-K4-A5RH-01A	PI4KA	chr22	21107191	-	TTC39C	chr18	21694518	+
Frame-shit	ENST00000544547	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
Frame-shit	ENST00000544547	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
5CDS-intron	ENST00000544547	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000332345	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000332345	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000332345	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000393310	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000393310	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000393310	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000410093	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000410093	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000410093	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000409441	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000409441	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000409441	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000338045	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000338045	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000338045	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000462817	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000462817	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000462817	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000542845	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000542845	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000542845	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000393314	ENST00000412964		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-3CDS	ENST00000393314	ENST00000295124		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
intron-intron	ENST00000393314	ENST00000470608		TCGA	LD	BLCA	TCGA-K4-A5RJ-01A	LIMS1	chr2	109151050	+	CCDC138	chr2	109421345	+
In-frame	ENST00000519416	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000519416	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000519416	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000519416	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000519416	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000520615	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000520615	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000520615	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000520615	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000520615	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000443286	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000443286	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000443286	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000443286	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000443286	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000520340	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000520340	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000520340	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000520340	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000520340	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000518415	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000518415	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000518415	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000518415	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000518415	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
3UTR-3CDS	ENST00000522752	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
3UTR-3CDS	ENST00000522752	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
3UTR-3CDS	ENST00000522752	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
3UTR-5UTR	ENST00000522752	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
3UTR-intron	ENST00000522752	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000348567	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000348567	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000348567	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000348567	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000348567	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000330691	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000330691	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000330691	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000330691	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000330691	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000317827	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000317827	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000317827	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000317827	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000317827	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000379931	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000379931	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000379931	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000379931	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000379931	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000276520	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000276520	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000276520	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000276520	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000276520	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000520973	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000520973	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000520973	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000520973	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000520973	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
intron-3CDS	ENST00000520611	ENST00000287263		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
intron-3CDS	ENST00000520611	ENST00000330843		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
intron-3CDS	ENST00000520611	ENST00000522727		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
intron-5UTR	ENST00000520611	ENST00000523182		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
intron-intron	ENST00000520611	ENST00000524118		TCGA	LD	BLCA	TCGA-K4-A6FZ-01A	TACC1	chr8	38682886	+	RAB11FIP1	chr8	37720631	-
5UTR-intron	ENST00000520552	ENST00000528697		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000520552	ENST00000530763		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-5UTR	ENST00000520552	ENST00000534577		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000520552	ENST00000278198		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000520552	ENST00000527150		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000335659	ENST00000528697		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000335659	ENST00000530763		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-5UTR	ENST00000335659	ENST00000534577		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000335659	ENST00000278198		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000335659	ENST00000527150		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000519597	ENST00000528697		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000519597	ENST00000530763		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-5UTR	ENST00000519597	ENST00000534577		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000519597	ENST00000278198		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
5UTR-intron	ENST00000519597	ENST00000527150		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000520311	ENST00000528697		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000520311	ENST00000530763		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-5UTR	ENST00000520311	ENST00000534577		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000520311	ENST00000278198		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000520311	ENST00000527150		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000519316	ENST00000528697		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000519316	ENST00000530763		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-5UTR	ENST00000519316	ENST00000534577		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000519316	ENST00000278198		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000519316	ENST00000527150		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000524319	ENST00000528697		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000524319	ENST00000530763		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-5UTR	ENST00000524319	ENST00000534577		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000524319	ENST00000278198		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
intron-intron	ENST00000524319	ENST00000527150		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ANKRD46	chr8	101571939	-	LRRC4C	chr11	41244558	-
Frame-shit	ENST00000491415	ENST00000400959		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
Frame-shit	ENST00000491415	ENST00000367025		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
Frame-shit	ENST00000491415	ENST00000367026		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
Frame-shit	ENST00000491415	ENST00000367024		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
Frame-shit	ENST00000491415	ENST00000010338		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
5CDS-5UTR	ENST00000491415	ENST00000367023		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
5CDS-5UTR	ENST00000491415	ENST00000477431		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
5CDS-intron	ENST00000491415	ENST00000467830		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	DIEXF	chr1	210004388	+	TRAF3IP3	chr1	209946293	+
Frame-shit	ENST00000310614	ENST00000321297		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
Frame-shit	ENST00000310614	ENST00000534905		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5CDS-3UTR	ENST00000310614	ENST00000451353		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3CDS	ENST00000535529	ENST00000321297		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3CDS	ENST00000535529	ENST00000534905		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3UTR	ENST00000535529	ENST00000451353		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3CDS	ENST00000411840	ENST00000321297		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3CDS	ENST00000411840	ENST00000534905		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3UTR	ENST00000411840	ENST00000451353		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3CDS	ENST00000398483	ENST00000321297		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3CDS	ENST00000398483	ENST00000534905		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-3UTR	ENST00000398483	ENST00000451353		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
Frame-shit	ENST00000542303	ENST00000321297		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
Frame-shit	ENST00000542303	ENST00000534905		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5CDS-3UTR	ENST00000542303	ENST00000451353		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
intron-3CDS	ENST00000314282	ENST00000321297		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
intron-3CDS	ENST00000314282	ENST00000534905		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
intron-3UTR	ENST00000314282	ENST00000451353		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	MRPL48	chr11	73499037	+	ATG16L2	chr11	72527773	+
5UTR-5UTR	ENST00000341084	ENST00000311028		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5UTR-5UTR	ENST00000341084	ENST00000395923		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5UTR-5UTR	ENST00000341084	ENST00000220931		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5UTR-5UTR	ENST00000341084	ENST00000521599		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5UTR-5UTR	ENST00000341084	ENST00000522951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5UTR-5UTR	ENST00000341084	ENST00000519508		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5UTR-intron	ENST00000341084	ENST00000521371		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000519449	ENST00000311028		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000519449	ENST00000395923		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000519449	ENST00000220931		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000519449	ENST00000521599		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000519449	ENST00000522951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000519449	ENST00000519508		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-intron	ENST00000519449	ENST00000521371		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000523255	ENST00000311028		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000523255	ENST00000395923		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000523255	ENST00000220931		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000523255	ENST00000521599		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000523255	ENST00000522951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000523255	ENST00000519508		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
intron-intron	ENST00000523255	ENST00000521371		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	RNF19A	chr8	101322095	-	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000373825	ENST00000480912		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000373825	ENST00000395728		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000373825	ENST00000375528		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000373825	ENST00000375530		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000373825	ENST00000375537		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000498185		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000415323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000450323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000440987		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000421926		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000551865		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000497104		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000436403		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000443951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000420874		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000450075		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000552339		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000497361		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000420930		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000428442		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000450229		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000429506		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000547244		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000467139		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000446303		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000427405		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000454705		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000420336		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000546877		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000400006		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000469681		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000400008		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000383372		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000383373		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000550866		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000425250		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000373825	ENST00000487513		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000423325	ENST00000480912		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000423325	ENST00000395728		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000423325	ENST00000375528		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000423325	ENST00000375530		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-5UTR	ENST00000423325	ENST00000375537		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000498185		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000415323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000450323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000440987		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000421926		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000551865		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000497104		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000436403		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000443951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000420874		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000450075		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000552339		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000497361		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000420930		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000428442		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000450229		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000429506		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000547244		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000467139		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000446303		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000427405		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000454705		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000420336		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000546877		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000400006		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000469681		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000400008		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000383372		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000383373		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000550866		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000425250		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5CDS-intron	ENST00000423325	ENST00000487513		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373822	ENST00000480912		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373822	ENST00000395728		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373822	ENST00000375528		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373822	ENST00000375530		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373822	ENST00000375537		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000498185		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000415323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000450323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000440987		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000421926		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000551865		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000497104		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000436403		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000443951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000420874		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000450075		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000552339		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000497361		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000420930		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000428442		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000450229		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000429506		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000547244		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000467139		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000446303		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000427405		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000454705		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000420336		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000546877		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000400006		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000469681		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000400008		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000383372		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000383373		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000550866		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000425250		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373822	ENST00000487513		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373821	ENST00000480912		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373821	ENST00000395728		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373821	ENST00000375528		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373821	ENST00000375530		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-5UTR	ENST00000373821	ENST00000375537		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000498185		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000415323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000450323		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000440987		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000421926		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000551865		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000497104		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000436403		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000443951		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000420874		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000450075		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000552339		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000497361		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000420930		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000428442		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000450229		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000429506		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000547244		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000467139		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000446303		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000427405		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000454705		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000420336		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000546877		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000400006		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000469681		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000400008		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000383372		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000383373		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000550866		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000425250		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
5UTR-intron	ENST00000373821	ENST00000487513		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	SRPK1	chr6	35856592	-	EHMT2	chr6	31848869	-
intron-3CDS	ENST00000524394	ENST00000540274		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
intron-3CDS	ENST00000524394	ENST00000377307		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
intron-3CDS	ENST00000524394	ENST00000276826		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
intron-intron	ENST00000524394	ENST00000528810		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
Frame-shit	ENST00000292562	ENST00000540274		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
Frame-shit	ENST00000292562	ENST00000377307		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
Frame-shit	ENST00000292562	ENST00000276826		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
5CDS-intron	ENST00000292562	ENST00000528810		TCGA	LD	BLCA	TCGA-K4-A6MB-01A	ZNF251	chr8	145979068	-	ARHGAP39	chr8	145773873	-
intron-3CDS	ENST00000491671	ENST00000380817		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-3CDS	ENST00000491671	ENST00000348911		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-3CDS	ENST00000491671	ENST00000390679		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-5UTR	ENST00000491671	ENST00000476293		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000216214	ENST00000380817		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000216214	ENST00000348911		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000216214	ENST00000390679		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
5CDS-5UTR	ENST00000216214	ENST00000476293		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000441876	ENST00000380817		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000441876	ENST00000348911		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000441876	ENST00000390679		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
5CDS-5UTR	ENST00000441876	ENST00000476293		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-3CDS	ENST00000405673	ENST00000380817		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-3CDS	ENST00000405673	ENST00000348911		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-3CDS	ENST00000405673	ENST00000390679		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
intron-5UTR	ENST00000405673	ENST00000476293		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000405548	ENST00000380817		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000405548	ENST00000348911		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
In-frame	ENST00000405548	ENST00000390679		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
5CDS-5UTR	ENST00000405548	ENST00000476293		TCGA	LD	BLCA	TCGA-K4-A83P-01A	FAM118A	chr22	45732292	+	SBF1	chr22	50895102	-
Frame-shit	ENST00000341776	ENST00000259727		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
5CDS-intron	ENST00000341776	ENST00000544145		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
5UTR-3CDS	ENST00000397311	ENST00000259727		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
5UTR-intron	ENST00000397311	ENST00000544145		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
Frame-shit	ENST00000541660	ENST00000259727		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
5CDS-intron	ENST00000541660	ENST00000544145		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
intron-3CDS	ENST00000474854	ENST00000259727		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
intron-intron	ENST00000474854	ENST00000544145		TCGA	LD	BLCA	TCGA-K4-A83P-01A	JARID2	chr6	15410596	+	GMPR	chr6	16274646	+
Frame-shit	ENST00000264230	ENST00000273859		TCGA	LD	BLCA	TCGA-K4-A83P-01A	NOA1	chr4	57834550	-	ATP10D	chr4	47525029	+
Frame-shit	ENST00000264230	ENST00000504445		TCGA	LD	BLCA	TCGA-K4-A83P-01A	NOA1	chr4	57834550	-	ATP10D	chr4	47525029	+
5CDS-intron	ENST00000264230	ENST00000512393		TCGA	LD	BLCA	TCGA-K4-A83P-01A	NOA1	chr4	57834550	-	ATP10D	chr4	47525029	+
Frame-shit	ENST00000380817	ENST00000348697		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000380817	ENST00000402984		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000380817	ENST00000262722		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000380817	ENST00000327858		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000380817	ENST00000442170		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000380817	ENST00000340923		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
5CDS-3UTR	ENST00000380817	ENST00000476366		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000348911	ENST00000348697		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000348911	ENST00000402984		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000348911	ENST00000262722		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000348911	ENST00000327858		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000348911	ENST00000442170		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000348911	ENST00000340923		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
5CDS-3UTR	ENST00000348911	ENST00000476366		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000390679	ENST00000348697		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000390679	ENST00000402984		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000390679	ENST00000262722		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000390679	ENST00000327858		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000390679	ENST00000442170		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000390679	ENST00000340923		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
5CDS-3UTR	ENST00000390679	ENST00000476366		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3CDS	ENST00000476293	ENST00000348697		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3CDS	ENST00000476293	ENST00000402984		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3CDS	ENST00000476293	ENST00000262722		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3CDS	ENST00000476293	ENST00000327858		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3CDS	ENST00000476293	ENST00000442170		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3CDS	ENST00000476293	ENST00000340923		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
intron-3UTR	ENST00000476293	ENST00000476366		TCGA	LD	BLCA	TCGA-K4-A83P-01A	SBF1	chr22	50892941	-	FBLN1	chr22	45938035	+
Frame-shit	ENST00000396981	ENST00000221399		TCGA	LD	BLCA	TCGA-K4-A83P-01A	UBE2G1	chr17	4269566	-	TULP2	chr19	49398419	-
5UTR-3CDS	ENST00000572484	ENST00000221399		TCGA	LD	BLCA	TCGA-K4-A83P-01A	UBE2G1	chr17	4269566	-	TULP2	chr19	49398419	-
5CDS-5UTR	ENST00000377075	ENST00000310865		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	CNNM4	chr2	97428138	+	NEURL3	chr2	97166661	-
intron-5UTR	ENST00000540067	ENST00000310865		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	CNNM4	chr2	97428138	+	NEURL3	chr2	97166661	-
intron-5UTR	ENST00000496186	ENST00000310865		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	CNNM4	chr2	97428138	+	NEURL3	chr2	97166661	-
5UTR-3CDS	ENST00000456731	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000456731	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000456731	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000456731	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000456731	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-3CDS	ENST00000367537	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000367537	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000367537	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000367537	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000367537	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-3CDS	ENST00000508461	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000508461	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000508461	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000508461	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5UTR-intron	ENST00000508461	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
In-frame	ENST00000347615	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000347615	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000347615	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000347615	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000347615	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
In-frame	ENST00000507469	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000507469	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000507469	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000507469	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000507469	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
In-frame	ENST00000515829	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000515829	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000515829	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000515829	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000515829	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
intron-3CDS	ENST00000507406	ENST00000546159		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000507406	ENST00000486375		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000507406	ENST00000367521		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000507406	ENST00000361927		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000507406	ENST00000367520		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	SMG7	chr1	183441784	+	COLGALT2	chr1	183947654	-
5CDS-5UTR	ENST00000586475	ENST00000221418		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
5CDS-intron	ENST00000586475	ENST00000597805		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
intron-5UTR	ENST00000591380	ENST00000221418		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
intron-intron	ENST00000591380	ENST00000597805		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
5CDS-5UTR	ENST00000330173	ENST00000221418		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
5CDS-intron	ENST00000330173	ENST00000597805		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
5UTR-5UTR	ENST00000388801	ENST00000221418		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
5UTR-intron	ENST00000388801	ENST00000597805		TCGA	LD	BLCA	TCGA-K4-AAQO-01A	ZNF570	chr19	37967336	+	ECH1	chr19	39322430	-
intron-5UTR	ENST00000359373	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000359373	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000359373	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000359373	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000359373	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000359373	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000495878	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000495878	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000495878	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000495878	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000495878	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000495878	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000455638	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000455638	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000455638	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000455638	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000455638	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000455638	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-5UTR	ENST00000393605	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393605	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393605	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393605	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-5UTR	ENST00000393605	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393605	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-5UTR	ENST00000334211	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000334211	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000334211	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000334211	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-5UTR	ENST00000334211	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000334211	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-5UTR	ENST00000393609	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393609	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393609	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393609	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-5UTR	ENST00000393609	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
5CDS-intron	ENST00000393609	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000426523	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000426523	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000426523	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000426523	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000426523	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000426523	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000429686	ENST00000336232		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000429686	ENST00000545207		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000429686	ENST00000535878		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000429686	ENST00000311438		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000429686	ENST00000430500		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-intron	ENST00000429686	ENST00000542795		TCGA	LD	BLCA	TCGA-KQ-A41O-01A	ARAP1	chr11	72403798	-	SLC22A8	chr11	62782434	-
intron-5UTR	ENST00000372797	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372797	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-intron	ENST00000372797	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000372802	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-intron	ENST00000372802	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372792	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-intron	ENST00000372792	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372798	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-intron	ENST00000372798	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000340450	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-intron	ENST00000340450	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000372805	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
5UTR-intron	ENST00000372805	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000427410		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000447388		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000425457		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000456393		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000372654		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000372653		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000372652		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000372651		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000440226		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000479759	ENST00000308733		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
intron-intron	ENST00000479759	ENST00000483091		TCGA	LD	BLCA	TCGA-KQ-A41P-01A	CAP1	chr1	40506473	+	NFYC	chr1	41204508	+
Frame-shit	ENST00000536681	ENST00000342526		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000536681	ENST00000498264		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
intron-3CDS	ENST00000549080	ENST00000342526		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
intron-intron	ENST00000549080	ENST00000498264		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
Frame-shit	ENST00000182377	ENST00000342526		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000182377	ENST00000498264		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
Frame-shit	ENST00000547116	ENST00000342526		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000547116	ENST00000498264		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	FAR2	chr12	29474857	+	AGMO	chr7	15240984	-
5UTR-3CDS	ENST00000353703	ENST00000407010		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
5UTR-intron	ENST00000353703	ENST00000399310		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
5UTR-intron	ENST00000353703	ENST00000479493		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
3UTR-3CDS	ENST00000479421	ENST00000407010		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
3UTR-intron	ENST00000479421	ENST00000399310		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
3UTR-intron	ENST00000479421	ENST00000479493		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
5UTR-3CDS	ENST00000372839	ENST00000407010		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
5UTR-intron	ENST00000372839	ENST00000399310		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
5UTR-intron	ENST00000372839	ENST00000479493		TCGA	LD	BLCA	TCGA-KQ-A41Q-01A	YWHAB	chr20	43514527	+	ISPD	chr7	16415866	-
5CDS-intron	ENST00000534993	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000534993	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000534993	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000534993	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000543805	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000543805	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000543805	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000543805	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000397071	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000397071	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000397071	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000397071	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000335125	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000335125	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000335125	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000335125	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000558753	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000558753	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000558753	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000558753	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000537912	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000537912	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000537912	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
intron-intron	ENST00000537912	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000545240	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000545240	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000545240	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000545240	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000382755	ENST00000557878		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000382755	ENST00000559275		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000382755	ENST00000324103		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
5CDS-intron	ENST00000382755	ENST00000382687		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	DHRS4L2	chr14	24464342	+	RNF31	chr14	24626499	+
3UTR-3CDS	ENST00000349945	ENST00000257209		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000349945	ENST00000445677		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000349945	ENST00000590592		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000349945	ENST00000359247		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000349945	ENST00000591635		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000349945	ENST00000592128		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3UTR	ENST00000349945	ENST00000587493		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000432919	ENST00000257209		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000432919	ENST00000445677		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000432919	ENST00000590592		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000432919	ENST00000359247		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000432919	ENST00000591635		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000432919	ENST00000592128		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3UTR	ENST00000432919	ENST00000587493		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000354436	ENST00000257209		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000354436	ENST00000445677		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000354436	ENST00000590592		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000354436	ENST00000359247		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000354436	ENST00000591635		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000354436	ENST00000592128		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3UTR	ENST00000354436	ENST00000587493		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000567239	ENST00000257209		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000567239	ENST00000445677		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000567239	ENST00000590592		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000567239	ENST00000359247		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000567239	ENST00000591635		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000567239	ENST00000592128		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3UTR	ENST00000567239	ENST00000587493		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000393742	ENST00000257209		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000393742	ENST00000445677		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000393742	ENST00000590592		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000393742	ENST00000359247		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000393742	ENST00000591635		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000393742	ENST00000592128		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3UTR	ENST00000393742	ENST00000587493		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000566899	ENST00000257209		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000566899	ENST00000445677		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000566899	ENST00000590592		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3CDS	ENST00000566899	ENST00000359247		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000566899	ENST00000591635		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-intron	ENST00000566899	ENST00000592128		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
3UTR-3UTR	ENST00000566899	ENST00000587493		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	NFAT5	chr16	69729282	+	FHOD3	chr18	34289058	+
5UTR-3CDS	ENST00000339302	ENST00000541222		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5UTR-3CDS	ENST00000339302	ENST00000316856		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5UTR-3CDS	ENST00000339302	ENST00000586534		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5UTR-intron	ENST00000339302	ENST00000592268		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5UTR-intron	ENST00000339302	ENST00000588826		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000430298	ENST00000541222		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000430298	ENST00000316856		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000430298	ENST00000586534		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000430298	ENST00000592268		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000430298	ENST00000588826		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
3UTR-3CDS	ENST00000397755	ENST00000541222		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
3UTR-3CDS	ENST00000397755	ENST00000316856		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
3UTR-3CDS	ENST00000397755	ENST00000586534		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
3UTR-intron	ENST00000397755	ENST00000592268		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
3UTR-intron	ENST00000397755	ENST00000588826		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000596883	ENST00000541222		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000596883	ENST00000316856		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000596883	ENST00000586534		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000596883	ENST00000592268		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000596883	ENST00000588826		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000397759	ENST00000541222		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000397759	ENST00000316856		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000397759	ENST00000586534		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000397759	ENST00000592268		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000397759	ENST00000588826		TCGA	LD	BLCA	TCGA-KQ-A41R-01A	ZNF788	chr19	12203285	+	RAD23A	chr19	13063503	+
In-frame	ENST00000419821	ENST00000359236		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
5CDS-intron	ENST00000419821	ENST00000536905		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
Frame-shit	ENST00000392533	ENST00000359236		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
5CDS-intron	ENST00000392533	ENST00000536905		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
intron-3CDS	ENST00000537952	ENST00000359236		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
intron-intron	ENST00000537952	ENST00000536905		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
intron-3CDS	ENST00000543709	ENST00000359236		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
intron-intron	ENST00000543709	ENST00000536905		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
intron-3CDS	ENST00000536979	ENST00000359236		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
intron-intron	ENST00000536979	ENST00000536905		TCGA	LD	BLCA	TCGA-LC-A66R-01A	TAOK3	chr12	118636856	-	VSIG10	chr12	118504499	-
5CDS-5UTR	ENST00000264335	ENST00000331302		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000264335	ENST00000323434		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000264335	ENST00000536489		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-intron	ENST00000264335	ENST00000576001		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-5UTR	ENST00000571732	ENST00000331302		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-5UTR	ENST00000571732	ENST00000323434		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-5UTR	ENST00000571732	ENST00000536489		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-intron	ENST00000571732	ENST00000576001		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000573026	ENST00000331302		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000573026	ENST00000323434		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000573026	ENST00000536489		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-intron	ENST00000573026	ENST00000576001		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000575977	ENST00000331302		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000575977	ENST00000323434		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-5UTR	ENST00000575977	ENST00000536489		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5CDS-intron	ENST00000575977	ENST00000576001		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-5UTR	ENST00000498643	ENST00000331302		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-5UTR	ENST00000498643	ENST00000323434		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-5UTR	ENST00000498643	ENST00000536489		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
5UTR-intron	ENST00000498643	ENST00000576001		TCGA	LD	BLCA	TCGA-LC-A66R-01A	YWHAE	chr17	1303341	-	RPH3AL	chr17	177370	-
intron-intron	ENST00000341885	ENST00000455895		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000413080		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000341071		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000526031		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000419121		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000446293		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000463967		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000341885	ENST00000449308		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000455895		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000413080		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000341071		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000526031		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000419121		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000446293		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000463967		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000468695	ENST00000449308		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000455895		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000413080		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000341071		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000526031		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000419121		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000446293		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000463967		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
intron-intron	ENST00000492007	ENST00000449308		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000455895		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000413080		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000341071		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000526031		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000419121		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000446293		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000463967		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
5CDS-intron	ENST00000373501	ENST00000449308		TCGA	LD	BLCA	TCGA-LC-A66R-01A	ZBTB8OS	chr1	33099246	-	BSDC1	chr1	32849649	-
Frame-shit	ENST00000509176	ENST00000335016		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
Frame-shit	ENST00000509176	ENST00000502871		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
Frame-shit	ENST00000333691	ENST00000335016		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
Frame-shit	ENST00000333691	ENST00000502871		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
Frame-shit	ENST00000432775	ENST00000335016		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
Frame-shit	ENST00000432775	ENST00000502871		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
intron-3CDS	ENST00000504150	ENST00000335016		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
intron-3CDS	ENST00000504150	ENST00000502871		TCGA	LD	BLCA	TCGA-LT-A5Z6-01A	CCSER1	chr4	91321280	+	BMP2K	chr4	79754736	+
Frame-shit	ENST00000253401	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000253401	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000253401	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000253401	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000253401	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000253401	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374878	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374878	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374878	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374878	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374878	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000374878	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374870	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374870	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374870	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374870	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374870	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000374870	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000437457	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000437457	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000437457	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000437457	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000437457	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000437457	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000495564	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000495564	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000495564	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000495564	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000495564	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5UTR-intron	ENST00000495564	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374872	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374872	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374872	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374872	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000374872	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000374872	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000433323	ENST00000416426		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000433323	ENST00000284073		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000433323	ENST00000322684		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000433323	ENST00000442934		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000433323	ENST00000579180		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000433323	ENST00000579505		TCGA	LD	BLCA	TCGA-MV-A51V-01A	ARHGEF9	chrX	62875374	-	MSI2	chr17	55478740	+
In-frame	ENST00000309971	ENST00000358161		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
In-frame	ENST00000309971	ENST00000372739		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
In-frame	ENST00000309971	ENST00000372731		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
5CDS-intron	ENST00000309971	ENST00000475367		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
In-frame	ENST00000372770	ENST00000358161		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
In-frame	ENST00000372770	ENST00000372739		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
In-frame	ENST00000372770	ENST00000372731		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
5CDS-intron	ENST00000372770	ENST00000475367		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
5UTR-3CDS	ENST00000539582	ENST00000358161		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
5UTR-3CDS	ENST00000539582	ENST00000372739		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
5UTR-3CDS	ENST00000539582	ENST00000372731		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
5UTR-intron	ENST00000539582	ENST00000475367		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000494417	ENST00000358161		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000494417	ENST00000372739		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000494417	ENST00000372731		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
intron-intron	ENST00000494417	ENST00000475367		TCGA	LD	BLCA	TCGA-MV-A51V-01A	GLE1	chr9	131277918	+	SPTAN1	chr9	131386607	+
In-frame	ENST00000316963	ENST00000537978		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000316963	ENST00000525139		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000316963	ENST00000256737		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-intron	ENST00000316963	ENST00000531646		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-intron	ENST00000316963	ENST00000531568		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-3UTR	ENST00000316963	ENST00000529242		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000343231	ENST00000537978		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000343231	ENST00000525139		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000343231	ENST00000256737		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-intron	ENST00000343231	ENST00000531646		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-intron	ENST00000343231	ENST00000531568		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-3UTR	ENST00000343231	ENST00000529242		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000522007	ENST00000537978		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000522007	ENST00000525139		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
In-frame	ENST00000522007	ENST00000256737		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-intron	ENST00000522007	ENST00000531646		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-intron	ENST00000522007	ENST00000531568		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-3UTR	ENST00000522007	ENST00000529242		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5UTR-3CDS	ENST00000519926	ENST00000537978		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5UTR-3CDS	ENST00000519926	ENST00000525139		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5UTR-3CDS	ENST00000519926	ENST00000256737		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5UTR-intron	ENST00000519926	ENST00000531646		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5UTR-intron	ENST00000519926	ENST00000531568		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5UTR-3UTR	ENST00000519926	ENST00000529242		TCGA	LD	BLCA	TCGA-MV-A51V-01A	LYPLA1	chr8	55013468	-	ANO3	chr11	26574796	+
5CDS-5UTR	ENST00000425759	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000425759	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000425759	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000425759	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000292733	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000292733	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000292733	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000542773	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000542773	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000542773	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000263205	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000263205	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000263205	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000406969	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000406969	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000406969	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000382974	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000382974	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000382974	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000541476	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000541476	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000541476	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000401886		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000447208		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000398042		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000432883		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000327374		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-3UTR	ENST00000478831	ENST00000479679		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000401833		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000434570		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-5UTR	ENST00000478831	ENST00000420290		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
3UTR-intron	ENST00000478831	ENST00000456048		TCGA	LD	BLCA	TCGA-PQ-A6FN-01A	MED15	chr22	20922918	+	TANGO2	chr22	20024283	+
In-frame	ENST00000257264	ENST00000532114		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
In-frame	ENST00000257264	ENST00000337908		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
5CDS-5UTR	ENST00000257264	ENST00000355131		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
5CDS-5UTR	ENST00000257264	ENST00000395016		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
intron-3CDS	ENST00000532419	ENST00000532114		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
intron-3CDS	ENST00000532419	ENST00000337908		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
intron-5UTR	ENST00000532419	ENST00000355131		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
intron-5UTR	ENST00000532419	ENST00000395016		TCGA	LD	BLCA	TCGA-S5-AA26-01A	TCN1	chr11	59622125	-	MS4A4A	chr11	60059698	+
In-frame	ENST00000536468	ENST00000277551		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000536468	ENST00000371372		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000536468	ENST00000277549		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000536468	ENST00000371363		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000536468	ENST00000371355		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000536468	ENST00000371357		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000536468	ENST00000277550		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000536468	ENST00000371367		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000536468	ENST00000545473		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000536468	ENST00000371365		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000247668	ENST00000277551		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000247668	ENST00000371372		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000247668	ENST00000277549		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000247668	ENST00000371363		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000247668	ENST00000371355		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000247668	ENST00000371357		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000247668	ENST00000277550		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000247668	ENST00000371367		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000247668	ENST00000545473		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000247668	ENST00000371365		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000359662	ENST00000277551		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000359662	ENST00000371372		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000359662	ENST00000277549		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000359662	ENST00000371363		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000359662	ENST00000371355		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
In-frame	ENST00000359662	ENST00000371357		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000359662	ENST00000277550		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000359662	ENST00000371367		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000359662	ENST00000545473		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5CDS-intron	ENST00000359662	ENST00000371365		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-3CDS	ENST00000482854	ENST00000277551		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-3CDS	ENST00000482854	ENST00000371372		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-3CDS	ENST00000482854	ENST00000277549		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-3CDS	ENST00000482854	ENST00000371363		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-3CDS	ENST00000482854	ENST00000371355		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-3CDS	ENST00000482854	ENST00000371357		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-intron	ENST00000482854	ENST00000277550		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-intron	ENST00000482854	ENST00000371367		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-intron	ENST00000482854	ENST00000545473		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
intron-intron	ENST00000482854	ENST00000371365		TCGA	LD	BLCA	TCGA-SY-A9G0-01A	TRAF2	chr9	139794972	+	CACNA1B	chr9	140970271	+
5UTR-5UTR	ENST00000230449	ENST00000370363		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74104211	-
5UTR-intron	ENST00000230449	ENST00000370359		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74104211	-
5UTR-5UTR	ENST00000448181	ENST00000370363		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74104211	-
5UTR-intron	ENST00000448181	ENST00000370359		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74104211	-
5UTR-5UTR	ENST00000475028	ENST00000370363		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74104211	-
5UTR-intron	ENST00000475028	ENST00000370359		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	EXOC2	chr6	693019	-	OOEP	chr6	74104211	-
5CDS-intron	ENST00000415930	ENST00000591471		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000589218		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000544914		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000591417		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000592168		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000392153		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000589392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000324411		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000591259		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000541583		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000591134		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000415930	ENST00000586897		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000591471		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000589218		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000544914		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000591417		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000592168		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000392153		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000589392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000324411		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000591259		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000541583		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000591134		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
5CDS-intron	ENST00000356487	ENST00000586897		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000591471		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000589218		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000544914		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000591417		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000592168		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000392153		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000589392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000324411		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000591259		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000541583		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000591134		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000586425	ENST00000586897		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	GPI	chr19	34890536	+	HKR1	chr19	37860081	+
intron-intron	ENST00000589977	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000589977	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000589977	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000589977	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000591571	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000591571	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000591571	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000591571	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000586738	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000586738	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000586738	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000586738	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588783	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588783	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588783	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588783	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586752	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586752	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586752	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586752	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588302	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588302	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588302	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000588302	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000590964	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000590964	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000590964	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000590964	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000341249	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000341249	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000341249	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
3UTR-intron	ENST00000341249	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000588822	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000588822	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000588822	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000588822	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586200	ENST00000269391		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586200	ENST00000319945		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586200	ENST00000589912		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000586200	ENST00000592271		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	METTL23	chr17	74729928	+	RNF157	chr17	74159165	-
intron-intron	ENST00000372978	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000372978	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000494547	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000456846	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372982	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000472818	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000372977	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482926	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000465926	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000397022		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000353147		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000352392		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000349999		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000317896		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000357618		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000470149		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000336625		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000488199		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000461397		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
intron-intron	ENST00000482432	ENST00000309234		TCGA	LD	BLCA	TCGA-SY-A9G5-01A	TAF8	chr6	42034197	+	HFE	chr6	26091069	+
Frame-shit	ENST00000432884	ENST00000381175		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000432884	ENST00000381178		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000432884	ENST00000352909		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000432884	ENST00000333684		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000262942	ENST00000381175		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000262942	ENST00000381178		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000262942	ENST00000352909		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
Frame-shit	ENST00000262942	ENST00000333684		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
intron-3CDS	ENST00000471960	ENST00000381175		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
intron-3CDS	ENST00000471960	ENST00000381178		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
intron-3CDS	ENST00000471960	ENST00000352909		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
intron-3CDS	ENST00000471960	ENST00000333684		TCGA	LD	BLCA	TCGA-UY-A78K-01A	ARPC1A	chr7	98942138	+	TH	chr11	2191101	-
intron-3CDS	ENST00000263377	ENST00000292609		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
intron-3CDS	ENST00000263377	ENST00000340880		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
intron-3CDS	ENST00000371835	ENST00000292609		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
intron-3CDS	ENST00000371835	ENST00000340880		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
5UTR-3CDS	ENST00000360016	ENST00000292609		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
5UTR-3CDS	ENST00000360016	ENST00000340880		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
intron-3CDS	ENST00000602230	ENST00000292609		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
intron-3CDS	ENST00000602230	ENST00000340880		TCGA	LD	BLCA	TCGA-UY-A78K-01A	BRD4	chr19	15443101	-	PGLYRP2	chr19	15580740	-
In-frame	ENST00000307968	ENST00000379249		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000379264		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000379272		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000379255		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000296869		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000379246		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000379244		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000544770		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307968	ENST00000543479		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307968	ENST00000477640		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307968	ENST00000357096		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307968	ENST00000379240		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307968	ENST00000431707		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000379249		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000379264		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000379272		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000379255		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000296869		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000379246		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000379244		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000544770		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000307954	ENST00000543479		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307954	ENST00000477640		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307954	ENST00000357096		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307954	ENST00000379240		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000307954	ENST00000431707		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000379249		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000379264		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000379272		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000379255		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000296869		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000379246		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000379244		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000544770		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000510461	ENST00000543479		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000510461	ENST00000477640		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000510461	ENST00000357096		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000510461	ENST00000379240		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000510461	ENST00000431707		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000379249		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000379264		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000379272		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000379255		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000296869		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000379246		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000379244		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000544770		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
In-frame	ENST00000511848	ENST00000543479		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000511848	ENST00000477640		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000511848	ENST00000357096		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000511848	ENST00000379240		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5CDS-intron	ENST00000511848	ENST00000431707		TCGA	LD	BLCA	TCGA-UY-A78K-01A	FNIP1	chr5	131080257	-	ACSL6	chr5	131298371	-
5UTR-intron	ENST00000193029	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5UTR-intron	ENST00000193029	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5UTR-intron	ENST00000193029	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5UTR-5UTR	ENST00000193029	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000522874	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000522874	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000522874	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-5UTR	ENST00000522874	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000361847	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000361847	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000361847	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-5UTR	ENST00000361847	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000524214	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000524214	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-intron	ENST00000524214	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
5CDS-5UTR	ENST00000524214	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000561150	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000561150	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000561150	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000561150	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000517966	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000517966	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000517966	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000517966	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000523231	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000523231	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000523231	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000523231	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000524370	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000524370	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000524370	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000524370	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000522867	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000522867	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000522867	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000522867	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000520266	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000520266	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000520266	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000520266	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000519058	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000519058	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000519058	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000519058	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000522534	ENST00000216281		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000522534	ENST00000334701		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-intron	ENST00000522534	ENST00000441629		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-5UTR	ENST00000522534	ENST00000558600		TCGA	LD	BLCA	TCGA-UY-A78K-01A	MOK	chr14	102749815	-	HSP90AA1	chr14	102568419	-
intron-3UTR	ENST00000221855	ENST00000291825		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000221855	ENST00000324001		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-intron	ENST00000221855	ENST00000599513		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000392178	ENST00000291825		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000392178	ENST00000324001		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-intron	ENST00000392178	ENST00000599513		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000589996	ENST00000291825		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000589996	ENST00000324001		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-intron	ENST00000589996	ENST00000599513		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000585746	ENST00000291825		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000585746	ENST00000324001		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-intron	ENST00000585746	ENST00000599513		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000586868	ENST00000291825		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-3UTR	ENST00000586868	ENST00000324001		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
intron-intron	ENST00000586868	ENST00000599513		TCGA	LD	BLCA	TCGA-UY-A78K-01A	TBCB	chr19	36610200	+	PRX	chr19	40902382	-
5UTR-3CDS	ENST00000324856	ENST00000374142		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
5UTR-intron	ENST00000324856	ENST00000478902		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
intron-3CDS	ENST00000457599	ENST00000374142		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
intron-intron	ENST00000457599	ENST00000478902		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
intron-3CDS	ENST00000374152	ENST00000374142		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
intron-intron	ENST00000374152	ENST00000478902		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
intron-3CDS	ENST00000540690	ENST00000374142		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
intron-intron	ENST00000540690	ENST00000478902		TCGA	LD	BLCA	TCGA-UY-A78M-01A	ARID1A	chr1	27022591	+	ZDHHC18	chr1	27158938	+
5CDS-intron	ENST00000389467	ENST00000350119		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000389467	ENST00000564944		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000389467	ENST00000564979		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000389467	ENST00000567824		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000446231	ENST00000350119		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000446231	ENST00000564944		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000446231	ENST00000564979		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000446231	ENST00000567824		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000565224	ENST00000350119		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000565224	ENST00000564944		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000565224	ENST00000564979		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
5CDS-intron	ENST00000565224	ENST00000567824		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
intron-intron	ENST00000567737	ENST00000350119		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
intron-intron	ENST00000567737	ENST00000564944		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
intron-intron	ENST00000567737	ENST00000564979		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
intron-intron	ENST00000567737	ENST00000567824		TCGA	LD	BLCA	TCGA-UY-A78M-01A	SMG1	chr16	18907374	-	DOC2A	chr16	30026583	-
Frame-shit	ENST00000449592	ENST00000330079		TCGA	LD	BLCA	TCGA-UY-A78M-01A	TMEM120B	chr12	122150870	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000540377	ENST00000330079		TCGA	LD	BLCA	TCGA-UY-A78M-01A	TMEM120B	chr12	122150870	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000538055	ENST00000330079		TCGA	LD	BLCA	TCGA-UY-A78M-01A	TMEM120B	chr12	122150870	+	ORAI1	chr12	122078947	+
5CDS-intron	ENST00000520539	ENST00000519630		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
5CDS-intron	ENST00000520539	ENST00000523572		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
5CDS-intron	ENST00000220959	ENST00000519630		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
5CDS-intron	ENST00000220959	ENST00000523572		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
intron-intron	ENST00000518205	ENST00000519630		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
intron-intron	ENST00000518205	ENST00000523572		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
5CDS-intron	ENST00000521922	ENST00000519630		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
5CDS-intron	ENST00000521922	ENST00000523572		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
intron-intron	ENST00000519528	ENST00000519630		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
intron-intron	ENST00000519528	ENST00000523572		TCGA	LD	BLCA	TCGA-UY-A78M-01A	UBR5	chr8	103424401	-	KB-1980E6.3	chr8	103541539	+
Frame-shit	ENST00000537045	ENST00000373710		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000537045	ENST00000536859		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000537045	ENST00000373709		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000537045	ENST00000536384		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000537045	ENST00000491976		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000263196	ENST00000373710		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000263196	ENST00000536859		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000263196	ENST00000373709		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000263196	ENST00000536384		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000263196	ENST00000491976		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000545799	ENST00000373710		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000545799	ENST00000536859		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000545799	ENST00000373709		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000545799	ENST00000536384		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000545799	ENST00000491976		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000473832	ENST00000373710		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000473832	ENST00000536859		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000473832	ENST00000373709		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000473832	ENST00000536384		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000473832	ENST00000491976		TCGA	LD	BLCA	TCGA-UY-A78N-01A	DGCR2	chr22	19050715	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000371730	ENST00000343253		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
Frame-shit	ENST00000371730	ENST00000401026		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
Frame-shit	ENST00000371730	ENST00000338949		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
5CDS-5UTR	ENST00000371730	ENST00000334652		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
5CDS-5UTR	ENST00000371730	ENST00000557479		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
5CDS-intron	ENST00000371730	ENST00000421014		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
Frame-shit	ENST00000371733	ENST00000343253		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
Frame-shit	ENST00000371733	ENST00000401026		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
Frame-shit	ENST00000371733	ENST00000338949		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
5CDS-5UTR	ENST00000371733	ENST00000334652		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
5CDS-5UTR	ENST00000371733	ENST00000557479		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
5CDS-intron	ENST00000371733	ENST00000421014		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-3CDS	ENST00000396122	ENST00000343253		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-3CDS	ENST00000396122	ENST00000401026		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-3CDS	ENST00000396122	ENST00000338949		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-5UTR	ENST00000396122	ENST00000334652		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-5UTR	ENST00000396122	ENST00000557479		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-intron	ENST00000396122	ENST00000421014		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-3CDS	ENST00000493793	ENST00000343253		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-3CDS	ENST00000493793	ENST00000401026		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-3CDS	ENST00000493793	ENST00000338949		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-5UTR	ENST00000493793	ENST00000334652		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-5UTR	ENST00000493793	ENST00000557479		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-intron	ENST00000493793	ENST00000421014		TCGA	LD	BLCA	TCGA-UY-A78N-01A	EPS15	chr1	51934145	-	CCDC18	chr1	93680303	+
intron-intron	ENST00000379485	ENST00000283547		TCGA	LD	BLCA	TCGA-UY-A78N-01A	KBTBD6	chr13	41706838	-	TEX29	chr13	111968532	+
intron-intron	ENST00000499385	ENST00000283547		TCGA	LD	BLCA	TCGA-UY-A78N-01A	KBTBD6	chr13	41706838	-	TEX29	chr13	111968532	+
Frame-shit	ENST00000253251	ENST00000377049		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
In-frame	ENST00000253251	ENST00000320498		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
5UTR-3CDS	ENST00000377157	ENST00000377049		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
5UTR-3CDS	ENST00000377157	ENST00000320498		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
Frame-shit	ENST00000343090	ENST00000377049		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
In-frame	ENST00000343090	ENST00000320498		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
Frame-shit	ENST00000377153	ENST00000377049		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
In-frame	ENST00000377153	ENST00000320498		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
intron-3CDS	ENST00000475795	ENST00000377049		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
intron-3CDS	ENST00000475795	ENST00000320498		TCGA	LD	BLCA	TCGA-UY-A78N-01A	UBE4B	chr1	10093752	+	CORT	chr1	10511434	+
Frame-shit	ENST00000263094	ENST00000585748		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
5CDS-intron	ENST00000263094	ENST00000326873		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
Frame-shit	ENST00000433129	ENST00000585748		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
5CDS-intron	ENST00000433129	ENST00000326873		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
Frame-shit	ENST00000435683	ENST00000585748		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
5CDS-intron	ENST00000435683	ENST00000326873		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
intron-3CDS	ENST00000533574	ENST00000585748		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
intron-intron	ENST00000533574	ENST00000326873		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	ABCA7	chr19	1047653	+	STK11	chr19	1189408	+
5CDS-intron	ENST00000216121	ENST00000347330		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000413209		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000338641		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000403435		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000361452		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000403999		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000334961		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000353887		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000361166		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000397789		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000216121	ENST00000361676		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000347330		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000413209		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000338641		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000403435		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000361452		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000403999		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000334961		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000353887		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000361166		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000397789		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
intron-intron	ENST00000494966	ENST00000361676		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	NIPSNAP1	chr22	29954859	-	NF2	chr22	30032740	+
5CDS-intron	ENST00000267163	ENST00000538056		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
5CDS-intron	ENST00000267163	ENST00000251108		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
5CDS-intron	ENST00000267163	ENST00000496952		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
5CDS-intron	ENST00000267163	ENST00000444959		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
intron-intron	ENST00000484879	ENST00000538056		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
intron-intron	ENST00000484879	ENST00000251108		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
intron-intron	ENST00000484879	ENST00000496952		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
intron-intron	ENST00000484879	ENST00000444959		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	RB1	chr13	48878185	+	CDADC1	chr13	49860358	+
In-frame	ENST00000253024	ENST00000354590		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	TRIM28	chr19	59059959	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000253024	ENST00000594051		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	TRIM28	chr19	59059959	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000253024	ENST00000600990		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	TRIM28	chr19	59059959	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000341753	ENST00000354590		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	TRIM28	chr19	59059959	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000341753	ENST00000594051		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	TRIM28	chr19	59059959	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000341753	ENST00000600990		TCGA	LD	BLCA	TCGA-UY-A8OB-01A	TRIM28	chr19	59059959	+	ZBTB45	chr19	59029040	-
5CDS-intron	ENST00000544915	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000544915	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000544915	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000544915	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000544915	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000544915	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000395901	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000395901	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000395901	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000395901	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000395901	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000395901	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000546179	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000546179	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000546179	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000546179	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000546179	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000546179	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000311001	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000311001	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000311001	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000311001	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000311001	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000311001	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000261178	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000261178	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000261178	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000261178	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000261178	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000261178	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000266503	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000266503	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000266503	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000266503	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000266503	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000266503	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
3UTR-intron	ENST00000539558	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
3UTR-5UTR	ENST00000539558	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
3UTR-intron	ENST00000539558	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
3UTR-intron	ENST00000539558	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
3UTR-intron	ENST00000539558	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
3UTR-intron	ENST00000539558	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000542388	ENST00000539107		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000542388	ENST00000545336		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000542388	ENST00000381256		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000542388	ENST00000381259		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000542388	ENST00000540401		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-intron	ENST00000542388	ENST00000306172		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	ARNTL2	chr12	27521345	+	CCDC91	chr12	28378728	+
5CDS-5UTR	ENST00000379882	ENST00000474820		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379882	ENST00000348849		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379882	ENST00000409075		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379882	ENST00000409289		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379882	ENST00000392753		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379882	ENST00000409972		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379868	ENST00000474820		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379868	ENST00000348849		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379868	ENST00000409075		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379868	ENST00000409289		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379868	ENST00000392753		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379868	ENST00000409972		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379883	ENST00000474820		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379883	ENST00000348849		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379883	ENST00000409075		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379883	ENST00000409289		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379883	ENST00000392753		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000379883	ENST00000409972		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
intron-5UTR	ENST00000545044	ENST00000474820		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
intron-5UTR	ENST00000545044	ENST00000348849		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
intron-5UTR	ENST00000545044	ENST00000409075		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
intron-5UTR	ENST00000545044	ENST00000409289		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
intron-5UTR	ENST00000545044	ENST00000392753		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
intron-5UTR	ENST00000545044	ENST00000409972		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000542096	ENST00000474820		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000542096	ENST00000348849		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000542096	ENST00000409075		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000542096	ENST00000409289		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000542096	ENST00000392753		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
5CDS-5UTR	ENST00000542096	ENST00000409972		TCGA	LD	BLCA	TCGA-UY-A9PB-01A	DDX58	chr9	32466288	-	RBMS1	chr2	161135169	-
Frame-shit	ENST00000566339	ENST00000361339		TCGA	LD	BLCA	TCGA-UY-A9PD-01A	SPSB3	chr16	1831359	-	IFT140	chr16	1561151	-
In-frame	ENST00000566339	ENST00000426508		TCGA	LD	BLCA	TCGA-UY-A9PD-01A	SPSB3	chr16	1831359	-	IFT140	chr16	1561151	-
5CDS-intron	ENST00000566339	ENST00000439987		TCGA	LD	BLCA	TCGA-UY-A9PD-01A	SPSB3	chr16	1831359	-	IFT140	chr16	1561151	-
In-frame	ENST00000301717	ENST00000361339		TCGA	LD	BLCA	TCGA-UY-A9PD-01A	SPSB3	chr16	1831359	-	IFT140	chr16	1561151	-
Frame-shit	ENST00000301717	ENST00000426508		TCGA	LD	BLCA	TCGA-UY-A9PD-01A	SPSB3	chr16	1831359	-	IFT140	chr16	1561151	-
5CDS-intron	ENST00000301717	ENST00000439987		TCGA	LD	BLCA	TCGA-UY-A9PD-01A	SPSB3	chr16	1831359	-	IFT140	chr16	1561151	-
Frame-shit	ENST00000305747	ENST00000409682		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CERS6	chr2	169574488	+	PSMD14	chr2	162223989	+
Frame-shit	ENST00000392687	ENST00000409682		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CERS6	chr2	169574488	+	PSMD14	chr2	162223989	+
Frame-shit	ENST00000316403	ENST00000216181		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000316403	ENST00000475726		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000316403	ENST00000401701		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
Frame-shit	ENST00000546343	ENST00000216181		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000546343	ENST00000475726		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000546343	ENST00000401701		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
Frame-shit	ENST00000560366	ENST00000216181		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000560366	ENST00000475726		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000560366	ENST00000401701		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
In-frame	ENST00000405140	ENST00000216181		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000405140	ENST00000475726		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000405140	ENST00000401701		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
Frame-shit	ENST00000523500	ENST00000216181		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000523500	ENST00000475726		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
5CDS-intron	ENST00000523500	ENST00000401701		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	CLU	chr8	27463871	-	MYH9	chr22	36723533	-
3UTR-3CDS	ENST00000487159	ENST00000412327		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
3UTR-3CDS	ENST00000487159	ENST00000335025		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
3UTR-3CDS	ENST00000487159	ENST00000492445		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
3UTR-3CDS	ENST00000487159	ENST00000398831		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
3UTR-3CDS	ENST00000487159	ENST00000406385		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
3UTR-3CDS	ENST00000487159	ENST00000456792		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
3UTR-3UTR	ENST00000487159	ENST00000446951		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000327628	ENST00000412327		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000327628	ENST00000335025		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000327628	ENST00000492445		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000327628	ENST00000398831		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000327628	ENST00000406385		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000327628	ENST00000456792		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3UTR	ENST00000327628	ENST00000446951		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000449246	ENST00000412327		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000449246	ENST00000335025		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000449246	ENST00000492445		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000449246	ENST00000398831		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000449246	ENST00000406385		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000449246	ENST00000456792		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3UTR	ENST00000449246	ENST00000446951		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000341421	ENST00000412327		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000341421	ENST00000335025		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000341421	ENST00000492445		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000341421	ENST00000398831		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000341421	ENST00000406385		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000341421	ENST00000456792		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3UTR	ENST00000341421	ENST00000446951		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000396175	ENST00000412327		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000396175	ENST00000335025		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000396175	ENST00000492445		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000396175	ENST00000398831		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000396175	ENST00000406385		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3CDS	ENST00000396175	ENST00000456792		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
intron-3UTR	ENST00000396175	ENST00000446951		TCGA	LD	BLCA	TCGA-UY-A9PE-01A	TRAK1	chr3	42055609	+	PPIL2	chr22	22040772	+
Frame-shit	ENST00000451813	ENST00000261560		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000451813	ENST00000599548		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000451813	ENST00000595401		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
Frame-shit	ENST00000252015	ENST00000261560		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000252015	ENST00000599548		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000252015	ENST00000595401		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
Frame-shit	ENST00000539834	ENST00000261560		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000539834	ENST00000599548		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000539834	ENST00000595401		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
Frame-shit	ENST00000432634	ENST00000261560		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000432634	ENST00000599548		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000432634	ENST00000595401		TCGA	LD	BLCA	TCGA-UY-A9PH-01A	TRPC4AP	chr20	33591213	-	ZNF430	chr19	21239437	+
5CDS-5UTR	ENST00000506447	ENST00000361205		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-5UTR	ENST00000506447	ENST00000399848		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-5UTR	ENST00000506447	ENST00000359446		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-intron	ENST00000506447	ENST00000587757		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-intron	ENST00000506447	ENST00000585931		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-intron	ENST00000506447	ENST00000586765		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-intron	ENST00000506447	ENST00000590308		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-intron	ENST00000506447	ENST00000592991		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-5UTR	ENST00000325971	ENST00000361205		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-5UTR	ENST00000325971	ENST00000399848		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-5UTR	ENST00000325971	ENST00000359446		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-intron	ENST00000325971	ENST00000587757		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-intron	ENST00000325971	ENST00000585931		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-intron	ENST00000325971	ENST00000586765		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-intron	ENST00000325971	ENST00000590308		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5UTR-intron	ENST00000325971	ENST00000592991		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-5UTR	ENST00000430049	ENST00000361205		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-5UTR	ENST00000430049	ENST00000399848		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-5UTR	ENST00000430049	ENST00000359446		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000430049	ENST00000587757		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000430049	ENST00000585931		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000430049	ENST00000586765		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000430049	ENST00000590308		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000430049	ENST00000592991		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-5UTR	ENST00000540847	ENST00000361205		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-5UTR	ENST00000540847	ENST00000399848		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-5UTR	ENST00000540847	ENST00000359446		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000540847	ENST00000587757		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000540847	ENST00000585931		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000540847	ENST00000586765		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000540847	ENST00000590308		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
intron-intron	ENST00000540847	ENST00000592991		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	CEP192	chr18	13019205	+	LDLRAD4	chr18	13278104	+
5CDS-5UTR	ENST00000296444	ENST00000203407		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
5CDS-5UTR	ENST00000296444	ENST00000493806		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
5CDS-5UTR	ENST00000444115	ENST00000203407		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
5CDS-5UTR	ENST00000444115	ENST00000493806		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-5UTR	ENST00000426002	ENST00000203407		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-5UTR	ENST00000426002	ENST00000493806		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-5UTR	ENST00000465449	ENST00000203407		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-5UTR	ENST00000465449	ENST00000493806		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
5CDS-5UTR	ENST00000442747	ENST00000203407		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
5CDS-5UTR	ENST00000442747	ENST00000493806		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-5UTR	ENST00000443308	ENST00000203407		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-5UTR	ENST00000443308	ENST00000493806		TCGA	LD	BLCA	TCGA-XF-A8HC-01A	SHISA5	chr3	48538570	-	UQCRC1	chr3	48647438	-
intron-3CDS	ENST00000202028	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000202028	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000202028	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000202028	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373950	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373950	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373950	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000373950	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000441639	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000441639	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000441639	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000441639	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
Frame-shit	ENST00000373946	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
Frame-shit	ENST00000373946	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
Frame-shit	ENST00000373946	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
5CDS-5UTR	ENST00000373946	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000338074	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000338074	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000338074	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000338074	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373941	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373941	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373941	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000373941	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000479336	ENST00000311637		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000479336	ENST00000338821		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000479336	ENST00000402822		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000479336	ENST00000477492		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	EPB41L1	chr20	34713449	+	ATP9A	chr20	50346517	-
5UTR-3CDS	ENST00000328090	ENST00000298375		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000328090	ENST00000525281		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000328090	ENST00000532248		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000328090	ENST00000334019		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000328090	ENST00000345253		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
intron-3CDS	ENST00000463468	ENST00000298375		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000463468	ENST00000525281		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000463468	ENST00000532248		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000463468	ENST00000334019		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000463468	ENST00000345253		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	FAM208B	chr10	5727138	+	AKR1E2	chr10	4872867	+
Frame-shit	ENST00000355029	ENST00000609104		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
Frame-shit	ENST00000355029	ENST00000277575		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
Frame-shit	ENST00000355029	ENST00000379237		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5CDS-intron	ENST00000355029	ENST00000443016		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5CDS-intron	ENST00000355029	ENST00000609853		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5UTR-3CDS	ENST00000542715	ENST00000609104		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5UTR-3CDS	ENST00000542715	ENST00000277575		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5UTR-3CDS	ENST00000542715	ENST00000379237		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5UTR-intron	ENST00000542715	ENST00000443016		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
5UTR-intron	ENST00000542715	ENST00000609853		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000380359	ENST00000609104		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000380359	ENST00000277575		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000380359	ENST00000379237		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-intron	ENST00000380359	ENST00000443016		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-intron	ENST00000380359	ENST00000609853		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000484741	ENST00000609104		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000484741	ENST00000277575		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000484741	ENST00000379237		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-intron	ENST00000484741	ENST00000443016		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
intron-intron	ENST00000484741	ENST00000609853		TCGA	LD	BLCA	TCGA-XF-A8HD-01A	NET1	chr10	5471192	+	USP6NL	chr10	11569566	-
In-frame	ENST00000415807	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
Frame-shit	ENST00000415807	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000415807	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000415807	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
In-frame	ENST00000336824	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
Frame-shit	ENST00000336824	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000336824	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000336824	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
In-frame	ENST00000416957	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
Frame-shit	ENST00000416957	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000416957	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000416957	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000392699	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000392699	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000392699	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000392699	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000421757	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000421757	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000421757	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000421757	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000423424	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000423424	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000423424	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000423424	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000476794	ENST00000486975		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-3CDS	ENST00000476794	ENST00000451576		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000476794	ENST00000064724		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
intron-intron	ENST00000476794	ENST00000489485		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	FNDC3B	chr3	171969331	+	CLDN11	chr3	170425833	+
In-frame	ENST00000380985	ENST00000404260		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000380985	ENST00000403625		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000380985	ENST00000406374		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000380985	ENST00000406039		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-3UTR	ENST00000380985	ENST00000478569		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000380985	ENST00000490016		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000380985	ENST00000403666		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000380985	ENST00000405643		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000380985	ENST00000261569		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000380985	ENST00000407621		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000502464	ENST00000404260		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000502464	ENST00000403625		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000502464	ENST00000406374		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
In-frame	ENST00000502464	ENST00000406039		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-3UTR	ENST00000502464	ENST00000478569		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000502464	ENST00000490016		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000502464	ENST00000403666		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000502464	ENST00000405643		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000502464	ENST00000261569		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
5CDS-intron	ENST00000502464	ENST00000407621		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-3CDS	ENST00000515595	ENST00000404260		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-3CDS	ENST00000515595	ENST00000403625		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-3CDS	ENST00000515595	ENST00000406374		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-3CDS	ENST00000515595	ENST00000406039		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-3UTR	ENST00000515595	ENST00000478569		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-intron	ENST00000515595	ENST00000490016		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-intron	ENST00000515595	ENST00000403666		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-intron	ENST00000515595	ENST00000405643		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-intron	ENST00000515595	ENST00000261569		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-intron	ENST00000515595	ENST00000407621		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	NLN	chr5	65088428	+	MAST4	chr5	66055537	+
intron-3CDS	ENST00000458659	ENST00000379056		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000458659	ENST00000529421		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000458659	ENST00000530705		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000458659	ENST00000379060		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000458659	ENST00000379055		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000458659	ENST00000309246		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-3CDS	ENST00000501704	ENST00000379056		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000501704	ENST00000529421		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000501704	ENST00000530705		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000501704	ENST00000379060		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000501704	ENST00000379055		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000501704	ENST00000309246		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-3CDS	ENST00000261489	ENST00000379056		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000261489	ENST00000529421		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000261489	ENST00000530705		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000261489	ENST00000379060		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000261489	ENST00000379055		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000261489	ENST00000309246		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-3CDS	ENST00000460842	ENST00000379056		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000460842	ENST00000529421		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000460842	ENST00000530705		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000460842	ENST00000379060		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000460842	ENST00000379055		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-5UTR	ENST00000460842	ENST00000309246		TCGA	LD	BLCA	TCGA-XF-A8HF-01A	TSC22D1	chr13	45151193	-	TPT1	chr13	45914319	-
intron-intron	ENST00000252032	ENST00000374980		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	C20orf194	chr20	3230807	-	EIF2S2	chr20	32680685	-
intron-intron	ENST00000453730	ENST00000374980		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	C20orf194	chr20	3230807	-	EIF2S2	chr20	32680685	-
intron-intron	ENST00000498079	ENST00000374980		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	C20orf194	chr20	3230807	-	EIF2S2	chr20	32680685	-
Frame-shit	ENST00000397527	ENST00000278886		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
Frame-shit	ENST00000397527	ENST00000422516		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
5CDS-intron	ENST00000397527	ENST00000464285		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
Frame-shit	ENST00000342580	ENST00000278886		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
Frame-shit	ENST00000342580	ENST00000422516		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
5CDS-intron	ENST00000342580	ENST00000464285		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
intron-3CDS	ENST00000476146	ENST00000278886		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
intron-3CDS	ENST00000476146	ENST00000422516		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
intron-intron	ENST00000476146	ENST00000464285		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
intron-3CDS	ENST00000397524	ENST00000278886		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
intron-3CDS	ENST00000397524	ENST00000422516		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
intron-intron	ENST00000397524	ENST00000464285		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	CEP250	chr20	34067970	+	NINL	chr20	25450731	-
In-frame	ENST00000374436	ENST00000545418		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
Frame-shit	ENST00000374436	ENST00000377805		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
Frame-shit	ENST00000374436	ENST00000246090		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
5CDS-3UTR	ENST00000374436	ENST00000467330		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
Frame-shit	ENST00000374443	ENST00000545418		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
In-frame	ENST00000374443	ENST00000377805		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
In-frame	ENST00000374443	ENST00000246090		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
5CDS-3UTR	ENST00000374443	ENST00000467330		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
Frame-shit	ENST00000374450	ENST00000545418		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
In-frame	ENST00000374450	ENST00000377805		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
In-frame	ENST00000374450	ENST00000246090		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
5CDS-3UTR	ENST00000374450	ENST00000467330		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
intron-3CDS	ENST00000462894	ENST00000545418		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
intron-3CDS	ENST00000462894	ENST00000377805		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
intron-3CDS	ENST00000462894	ENST00000246090		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
intron-3UTR	ENST00000462894	ENST00000467330		TCGA	LD	BLCA	TCGA-XF-A8HG-01A	EIF6	chr20	33867369	-	BANF2	chr20	17716310	+
5UTR-3CDS	ENST00000568395	ENST00000302641		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	ERVK13-1	chr16	2719412	-	PRSS27	chr16	2762815	-
5CDS-intron	ENST00000401558	ENST00000426997		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
5CDS-intron	ENST00000401558	ENST00000432605		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
5CDS-intron	ENST00000404992	ENST00000426997		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
5CDS-intron	ENST00000404992	ENST00000432605		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
5CDS-intron	ENST00000406957	ENST00000426997		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
5CDS-intron	ENST00000406957	ENST00000432605		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
intron-intron	ENST00000481214	ENST00000426997		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
intron-intron	ENST00000481214	ENST00000432605		TCGA	LD	BLCA	TCGA-XF-A8HH-01A	XPO1	chr2	61749746	-	C2orf74	chr2	61384997	+
5UTR-3CDS	ENST00000442339	ENST00000247843		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
5UTR-3CDS	ENST00000442339	ENST00000548020		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000409004	ENST00000247843		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000409004	ENST00000548020		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000409799	ENST00000247843		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000409799	ENST00000548020		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000409445	ENST00000247843		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000409445	ENST00000548020		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000393284	ENST00000247843		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000393284	ENST00000548020		TCGA	LD	BLCA	TCGA-XF-A9SH-01A	CAPS2	chr12	75784618	-	YEATS4	chr12	69783927	+
5CDS-intron	ENST00000301015	ENST00000537792		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000301015	ENST00000537465		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000301015	ENST00000237353		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000301015	ENST00000355636		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000301015	ENST00000543746		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000327397	ENST00000537792		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000327397	ENST00000537465		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000327397	ENST00000237353		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000327397	ENST00000355636		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000327397	ENST00000543746		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	PIEZO1	chr16	88851309	-	PMFBP1	chr16	72153988	-
3UTR-3CDS	ENST00000482436	ENST00000343053		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	ZNF713	chr7	55980416	+	NELFB	chr9	140166533	+
Frame-shit	ENST00000429591	ENST00000343053		TCGA	LD	BLCA	TCGA-XF-A9SK-01A	ZNF713	chr7	55980416	+	NELFB	chr9	140166533	+
5CDS-intron	ENST00000302538	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
5CDS-intron	ENST00000302538	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
5CDS-intron	ENST00000302538	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
5CDS-intron	ENST00000302538	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
5CDS-intron	ENST00000302538	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000544583	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000544583	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000544583	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000544583	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000544583	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000572441	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000572441	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000572441	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000572441	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000572441	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000574437	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000574437	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000574437	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000574437	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000574437	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000291107	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000291107	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000291107	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000291107	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000291107	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000543210	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000543210	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000543210	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000543210	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000543210	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000536794	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000536794	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000536794	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000536794	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000536794	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000573895	ENST00000392636		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000573895	ENST00000413681		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000573895	ENST00000549590		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000573895	ENST00000455480		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
intron-intron	ENST00000573895	ENST00000313698		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	ABR	chr17	1082961	-	ACAD10	chr12	112191576	+
5CDS-5UTR	ENST00000434457	ENST00000380376		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	DENND4C	chr9	19360486	+	ACER2	chr9	19423859	+
5CDS-5UTR	ENST00000434457	ENST00000340967		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	DENND4C	chr9	19360486	+	ACER2	chr9	19423859	+
5CDS-5UTR	ENST00000602925	ENST00000380376		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	DENND4C	chr9	19360486	+	ACER2	chr9	19423859	+
5CDS-5UTR	ENST00000602925	ENST00000340967		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	DENND4C	chr9	19360486	+	ACER2	chr9	19423859	+
5CDS-5UTR	ENST00000380432	ENST00000380376		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	DENND4C	chr9	19360486	+	ACER2	chr9	19423859	+
5CDS-5UTR	ENST00000380432	ENST00000340967		TCGA	LD	BLCA	TCGA-XF-A9SP-01A	DENND4C	chr9	19360486	+	ACER2	chr9	19423859	+
intron-3CDS	ENST00000341217	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000341217	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000341217	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-intron	ENST00000341217	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000581407	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000581407	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000581407	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000581407	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000582266	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000582266	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000582266	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000582266	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000452648	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000452648	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000452648	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-intron	ENST00000452648	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000582059	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000582059	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000582059	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-intron	ENST00000582059	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000583953	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000583953	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-3CDS	ENST00000583953	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
intron-intron	ENST00000583953	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000577682	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000577682	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000577682	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000577682	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000583522	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000583522	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000583522	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000583522	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000581381	ENST00000394906		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000581381	ENST00000394908		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000581381	ENST00000585169		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000581381	ENST00000577789		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	FAM222B	chr17	27169700	-	FLOT2	chr17	27216044	-
5CDS-3UTR	ENST00000323274	ENST00000313949		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000371098		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000371075		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000371100		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371099		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371102		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000464624		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000306120		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371095		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371085		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000354359		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000265620		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000306090		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371081		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000313949		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000371098		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000371075		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000371100		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371099		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371102		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000464624		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000306120		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371095		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371085		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000354359		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000265620		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000306090		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371081		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000313949		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000371098		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000371075		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000371100		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371099		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371102		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000464624		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000306120		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371095		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371085		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000354359		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000265620		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000306090		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371081		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000313949		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000371098		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000371075		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000371100		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371099		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371102		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000464624		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000306120		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371095		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371085		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000354359		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000265620		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000306090		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371081		TCGA	LD	BLCA	TCGA-XF-A9ST-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
In-frame	ENST00000277746	ENST00000298249		TCGA	LD	BLCA	TCGA-XF-A9SU-01A	NRBF2	chr10	64893260	+	REEP3	chr10	65354538	+
In-frame	ENST00000277746	ENST00000373758		TCGA	LD	BLCA	TCGA-XF-A9SU-01A	NRBF2	chr10	64893260	+	REEP3	chr10	65354538	+
Frame-shit	ENST00000435510	ENST00000298249		TCGA	LD	BLCA	TCGA-XF-A9SU-01A	NRBF2	chr10	64893260	+	REEP3	chr10	65354538	+
Frame-shit	ENST00000435510	ENST00000373758		TCGA	LD	BLCA	TCGA-XF-A9SU-01A	NRBF2	chr10	64893260	+	REEP3	chr10	65354538	+
5CDS-5UTR	ENST00000310823	ENST00000542515		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000310823	ENST00000279147		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000310823	ENST00000536870		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000310823	ENST00000535657		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000310823	ENST00000539414		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000310823	ENST00000542341		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-5UTR	ENST00000497134	ENST00000542515		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000497134	ENST00000279147		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000497134	ENST00000536870		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000497134	ENST00000535657		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000497134	ENST00000539414		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
5CDS-intron	ENST00000497134	ENST00000542341		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	ADAM17	chr2	9675963	-	ORAOV1	chr11	69471420	-
Frame-shit	ENST00000550308	ENST00000595618		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
Frame-shit	ENST00000550308	ENST00000594824		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
Frame-shit	ENST00000550308	ENST00000397274		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
5CDS-intron	ENST00000550308	ENST00000593411		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
In-frame	ENST00000324632	ENST00000595618		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
In-frame	ENST00000324632	ENST00000594824		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
In-frame	ENST00000324632	ENST00000397274		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
5CDS-intron	ENST00000324632	ENST00000593411		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	CYP4F12	chr19	15807880	+	MYO9B	chr19	17312948	+
5CDS-intron	ENST00000305997	ENST00000294309		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	MBOAT2	chr2	9143669	-	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000305997	ENST00000542467		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	MBOAT2	chr2	9143669	-	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000305997	ENST00000442692		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	MBOAT2	chr2	9143669	-	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000486484	ENST00000294309		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	MBOAT2	chr2	9143669	-	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000486484	ENST00000542467		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	MBOAT2	chr2	9143669	-	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000486484	ENST00000442692		TCGA	LD	BLCA	TCGA-XF-A9SV-01A	MBOAT2	chr2	9143669	-	TPCN2	chr11	68902903	+
In-frame	ENST00000448507	ENST00000264954		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
5CDS-5UTR	ENST00000448507	ENST00000514056		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
In-frame	ENST00000409757	ENST00000264954		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
5CDS-5UTR	ENST00000409757	ENST00000514056		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-3CDS	ENST00000410031	ENST00000264954		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-5UTR	ENST00000410031	ENST00000514056		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-3CDS	ENST00000451522	ENST00000264954		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-5UTR	ENST00000451522	ENST00000514056		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-3CDS	ENST00000446947	ENST00000264954		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-5UTR	ENST00000446947	ENST00000514056		TCGA	LD	BLCA	TCGA-XF-A9T0-01A	TBC1D14	chr4	6925838	+	GRPEL1	chr4	7065950	-
intron-5UTR	ENST00000540367	ENST00000312006		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-intron	ENST00000540367	ENST00000527878		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
5UTR-5UTR	ENST00000376618	ENST00000312006		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
5UTR-intron	ENST00000376618	ENST00000527878		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
5UTR-5UTR	ENST00000265641	ENST00000312006		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
5UTR-intron	ENST00000265641	ENST00000527878		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-5UTR	ENST00000539743	ENST00000312006		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-intron	ENST00000539743	ENST00000527878		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-5UTR	ENST00000537756	ENST00000312006		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-intron	ENST00000537756	ENST00000527878		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-5UTR	ENST00000538994	ENST00000312006		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
intron-intron	ENST00000538994	ENST00000527878		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	CPT1A	chr11	68609243	-	GAL3ST3	chr11	65816620	-
5UTR-intron	ENST00000379992	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000379992	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000379992	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000379992	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000379992	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000379992	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000379992	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000493941	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
intron-intron	ENST00000308675	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	LINGO2	chr9	28295206	-	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000298048	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000538311	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536987	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536860	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000545008	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000536329	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000541717	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
5UTR-intron	ENST00000543751	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000479399		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000341694		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000259632		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000378916		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000447983		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000477738		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
3UTR-intron	ENST00000487398	ENST00000378913		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	MELK	chr9	36573004	+	DCTN3	chr9	34618757	-
Frame-shit	ENST00000377707	ENST00000379081		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000379087		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000379080		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000379084		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000379089		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000445726		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000297620		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377707	ENST00000379078		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000379081		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000379087		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000379080		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000379084		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000379089		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000445726		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000297620		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000377700	ENST00000379078		TCGA	LD	BLCA	TCGA-XF-A9T4-01A	SHB	chr9	38016008	-	FAM219A	chr9	34405962	-
intron-3CDS	ENST00000316316	ENST00000390242		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	MCM9	chr6	119238734	-	IGKJ1	chr2	89161435	-
intron-3CDS	ENST00000505485	ENST00000390242		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	MCM9	chr6	119238734	-	IGKJ1	chr2	89161435	-
intron-3CDS	ENST00000316068	ENST00000390242		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	MCM9	chr6	119238734	-	IGKJ1	chr2	89161435	-
In-frame	ENST00000297438	ENST00000220764		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000297438	ENST00000519007		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000297438	ENST00000522161		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
In-frame	ENST00000451899	ENST00000220764		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000451899	ENST00000519007		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000451899	ENST00000522161		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
Frame-shit	ENST00000520659	ENST00000220764		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000520659	ENST00000519007		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000520659	ENST00000522161		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	OSGIN2	chr8	90933399	+	DECR1	chr8	91054956	+
5CDS-intron	ENST00000271526	ENST00000537040		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000451864		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000400992		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000368246		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000255013		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000368249		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-3UTR	ENST00000271526	ENST00000494874		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000537040		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000451864		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000400992		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000368246		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000255013		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000368249		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-3UTR	ENST00000353233	ENST00000494874		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000537040		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000451864		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000400992		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000368246		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000255013		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000368249		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-3UTR	ENST00000491853	ENST00000494874		TCGA	LD	BLCA	TCGA-XF-A9T5-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
3UTR-3CDS	ENST00000467933	ENST00000367763		TCGA	LD	BLCA	TCGA-XF-A9T8-01A	SRGAP2B	chr1	144014093	-	GORAB	chr1	170508351	+
3UTR-3CDS	ENST00000467933	ENST00000367762		TCGA	LD	BLCA	TCGA-XF-A9T8-01A	SRGAP2B	chr1	144014093	-	GORAB	chr1	170508351	+
3UTR-3UTR	ENST00000467933	ENST00000465717		TCGA	LD	BLCA	TCGA-XF-A9T8-01A	SRGAP2B	chr1	144014093	-	GORAB	chr1	170508351	+
Frame-shit	ENST00000256458	ENST00000274695		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	IRAK2	chr3	10242199	+	CDKAL1	chr6	20846306	+
Frame-shit	ENST00000256458	ENST00000378624		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	IRAK2	chr3	10242199	+	CDKAL1	chr6	20846306	+
Frame-shit	ENST00000256458	ENST00000378610		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	IRAK2	chr3	10242199	+	CDKAL1	chr6	20846306	+
5CDS-intron	ENST00000256458	ENST00000476517		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	IRAK2	chr3	10242199	+	CDKAL1	chr6	20846306	+
In-frame	ENST00000302313	ENST00000261609		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5CDS-intron	ENST00000302313	ENST00000563945		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5UTR-3CDS	ENST00000418020	ENST00000261609		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5UTR-intron	ENST00000418020	ENST00000563945		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
In-frame	ENST00000544962	ENST00000261609		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5CDS-intron	ENST00000544962	ENST00000563945		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5UTR-3CDS	ENST00000396258	ENST00000261609		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5UTR-intron	ENST00000396258	ENST00000563945		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
intron-3CDS	ENST00000466405	ENST00000261609		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
intron-intron	ENST00000466405	ENST00000563945		TCGA	LD	BLCA	TCGA-XF-AAMG-01A	WDR48	chr3	39093564	+	HERC2	chr15	28397976	-
5CDS-5UTR	ENST00000294304	ENST00000550418		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-5UTR	ENST00000294304	ENST00000553186		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-5UTR	ENST00000294304	ENST00000547372		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-5UTR	ENST00000294304	ENST00000422070		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-5UTR	ENST00000294304	ENST00000535565		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-3UTR	ENST00000294304	ENST00000547427		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-3UTR	ENST00000294304	ENST00000552089		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-intron	ENST00000294304	ENST00000547338		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-intron	ENST00000294304	ENST00000436368		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-intron	ENST00000294304	ENST00000311745		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-intron	ENST00000294304	ENST00000355637		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
5CDS-intron	ENST00000294304	ENST00000340209		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-5UTR	ENST00000529481	ENST00000550418		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-5UTR	ENST00000529481	ENST00000553186		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-5UTR	ENST00000529481	ENST00000547372		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-5UTR	ENST00000529481	ENST00000422070		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-5UTR	ENST00000529481	ENST00000535565		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-3UTR	ENST00000529481	ENST00000547427		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-3UTR	ENST00000529481	ENST00000552089		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-intron	ENST00000529481	ENST00000547338		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-intron	ENST00000529481	ENST00000436368		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-intron	ENST00000529481	ENST00000311745		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-intron	ENST00000529481	ENST00000355637		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-intron	ENST00000529481	ENST00000340209		TCGA	LD	BLCA	TCGA-XF-AAML-01A	LRP5	chr11	68125315	+	RBFOX1	chr16	6704604	+
intron-3CDS	ENST00000542515	ENST00000449833		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000542515	ENST00000409161		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000542515	ENST00000423696		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000542515	ENST00000338508		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000542515	ENST00000409530		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000542515	ENST00000449116		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000542515	ENST00000357171		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
intron-intron	ENST00000542515	ENST00000468619		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000279147	ENST00000449833		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000279147	ENST00000409161		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000279147	ENST00000423696		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000279147	ENST00000338508		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000279147	ENST00000409530		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000279147	ENST00000449116		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
In-frame	ENST00000279147	ENST00000357171		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000279147	ENST00000468619		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000536870	ENST00000449833		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000536870	ENST00000409161		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000536870	ENST00000423696		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000536870	ENST00000338508		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000536870	ENST00000409530		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000536870	ENST00000449116		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
In-frame	ENST00000536870	ENST00000357171		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000536870	ENST00000468619		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000535657	ENST00000449833		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000535657	ENST00000409161		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000535657	ENST00000423696		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000535657	ENST00000338508		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000535657	ENST00000409530		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000535657	ENST00000449116		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
In-frame	ENST00000535657	ENST00000357171		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000535657	ENST00000468619		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000539414	ENST00000449833		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000539414	ENST00000409161		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000539414	ENST00000423696		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000539414	ENST00000338508		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000539414	ENST00000409530		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000539414	ENST00000449116		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
In-frame	ENST00000539414	ENST00000357171		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000539414	ENST00000468619		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000542341	ENST00000449833		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000542341	ENST00000409161		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000542341	ENST00000423696		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000542341	ENST00000338508		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000542341	ENST00000409530		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000542341	ENST00000449116		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
In-frame	ENST00000542341	ENST00000357171		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000542341	ENST00000468619		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	ORAOV1	chr11	69489958	-	SHANK2	chr11	70338570	-
In-frame	ENST00000374012	ENST00000202028		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000374012	ENST00000373950		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000374012	ENST00000441639		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000374012	ENST00000373946		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000374012	ENST00000338074		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000374012	ENST00000373941		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
5CDS-3UTR	ENST00000374012	ENST00000479336		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000439301	ENST00000202028		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000439301	ENST00000373950		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000439301	ENST00000441639		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000439301	ENST00000373946		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000439301	ENST00000338074		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
In-frame	ENST00000439301	ENST00000373941		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
5CDS-3UTR	ENST00000439301	ENST00000479336		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3CDS	ENST00000481202	ENST00000202028		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3CDS	ENST00000481202	ENST00000373950		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3CDS	ENST00000481202	ENST00000441639		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3CDS	ENST00000481202	ENST00000373946		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3CDS	ENST00000481202	ENST00000338074		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3CDS	ENST00000481202	ENST00000373941		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
3UTR-3UTR	ENST00000481202	ENST00000479336		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	PHF20	chr20	34430666	+	EPB41L1	chr20	34800194	+
5CDS-intron	ENST00000487861	ENST00000555917		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000487861	ENST00000361956		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000487861	ENST00000381280		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000471583	ENST00000555917		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000471583	ENST00000361956		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000471583	ENST00000381280		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000487270	ENST00000555917		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000487270	ENST00000361956		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000487270	ENST00000381280		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000488612	ENST00000555917		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000488612	ENST00000361956		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000488612	ENST00000381280		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000390683	ENST00000555917		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000390683	ENST00000361956		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
5CDS-intron	ENST00000390683	ENST00000381280		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
3UTR-intron	ENST00000469165	ENST00000555917		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
3UTR-intron	ENST00000469165	ENST00000361956		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
3UTR-intron	ENST00000469165	ENST00000381280		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	RAD51B	chr14	68934967	+	SMOC1	chr14	70459134	+
In-frame	ENST00000380913	ENST00000380682		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	SHROOM2	chrX	9907406	+	FRMPD4	chrX	12725588	+
intron-3CDS	ENST00000493668	ENST00000380682		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	SHROOM2	chrX	9907406	+	FRMPD4	chrX	12725588	+
In-frame	ENST00000418909	ENST00000380682		TCGA	LD	BLCA	TCGA-XF-AAMQ-01A	SHROOM2	chrX	9907406	+	FRMPD4	chrX	12725588	+
5CDS-5UTR	ENST00000330817	ENST00000608615		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ALG12	chr22	50307033	-	KB-208E9.1	chr22	23925665	-
Frame-shit	ENST00000247178	ENST00000554963		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ATG14	chr14	55852577	-	MED6	chr14	71051660	-
Frame-shit	ENST00000247178	ENST00000256379		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ATG14	chr14	55852577	-	MED6	chr14	71051660	-
Frame-shit	ENST00000247178	ENST00000430055		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ATG14	chr14	55852577	-	MED6	chr14	71051660	-
Frame-shit	ENST00000247178	ENST00000440435		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ATG14	chr14	55852577	-	MED6	chr14	71051660	-
5CDS-intron	ENST00000247178	ENST00000556044		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ATG14	chr14	55852577	-	MED6	chr14	71051660	-
intron-3CDS	ENST00000397110	ENST00000358763		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000397110	ENST00000332840		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-intron	ENST00000397110	ENST00000467095		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000337843	ENST00000358763		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000337843	ENST00000332840		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-intron	ENST00000337843	ENST00000467095		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000470655	ENST00000358763		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000470655	ENST00000332840		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-intron	ENST00000470655	ENST00000467095		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000255836	ENST00000358763		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-3CDS	ENST00000255836	ENST00000332840		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
intron-intron	ENST00000255836	ENST00000467095		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	C1QTNF6	chr22	37593643	-	SYN3	chr22	33376687	-
3UTR-5UTR	ENST00000250498	ENST00000267485		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
3UTR-5UTR	ENST00000250498	ENST00000334342		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
5UTR-5UTR	ENST00000489532	ENST00000267485		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
5UTR-5UTR	ENST00000489532	ENST00000334342		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000538631	ENST00000267485		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000538631	ENST00000334342		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
3UTR-5UTR	ENST00000543337	ENST00000267485		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
3UTR-5UTR	ENST00000543337	ENST00000334342		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	DAD1	chr14	23043959	-	C14orf37	chr14	58606132	-
5UTR-3CDS	ENST00000394071	ENST00000281081		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
5UTR-3CDS	ENST00000394071	ENST00000536705		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
5UTR-intron	ENST00000394071	ENST00000418681		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-3CDS	ENST00000286523	ENST00000281081		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-3CDS	ENST00000286523	ENST00000536705		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-intron	ENST00000286523	ENST00000418681		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-3CDS	ENST00000486739	ENST00000281081		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-3CDS	ENST00000486739	ENST00000536705		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-intron	ENST00000486739	ENST00000418681		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	ELMSAN1	chr14	74253805	-	NUBPL	chr14	32068495	+
intron-intron	ENST00000449098	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000449098	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000449098	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000449098	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000449098	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000320084	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000320084	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000320084	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000320084	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000320084	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000336053	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000336053	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000336053	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000336053	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000336053	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554969	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554969	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554969	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554969	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554969	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556142	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556142	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556142	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556142	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556142	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554455	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554455	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554455	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554455	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000554455	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000430246	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000430246	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000430246	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000430246	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000430246	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553753	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553753	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553753	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553753	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553753	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555914	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555914	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555914	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555914	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555914	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555309	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555309	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555309	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555309	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555309	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556628	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556628	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556628	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556628	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556628	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555883	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555883	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555883	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555883	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000555883	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556513	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556513	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556513	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556513	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556513	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000557201	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000557201	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000557201	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000557201	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000557201	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553300	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553300	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553300	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553300	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000553300	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556897	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556897	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556897	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556897	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000556897	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000420743	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000420743	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000420743	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000420743	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
intron-intron	ENST00000420743	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	HNRNPC	chr14	21732831	-	PAPOLA	chr14	97020822	+
In-frame	ENST00000311852	ENST00000325642		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
5CDS-5UTR	ENST00000311852	ENST00000529574		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
5CDS-5UTR	ENST00000311852	ENST00000395076		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
5CDS-5UTR	ENST00000311852	ENST00000325658		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
3UTR-3CDS	ENST00000548162	ENST00000325642		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
3UTR-5UTR	ENST00000548162	ENST00000529574		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
3UTR-5UTR	ENST00000548162	ENST00000395076		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
3UTR-5UTR	ENST00000548162	ENST00000325658		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	MMP14	chr14	23314575	+	PPM1A	chr14	60749402	+
Frame-shit	ENST00000335272	ENST00000382084		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
In-frame	ENST00000335272	ENST00000400234		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
5CDS-5UTR	ENST00000335272	ENST00000461833		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
5CDS-intron	ENST00000335272	ENST00000382086		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
Frame-shit	ENST00000320996	ENST00000382084		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
In-frame	ENST00000320996	ENST00000400234		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
5CDS-5UTR	ENST00000320996	ENST00000461833		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
5CDS-intron	ENST00000320996	ENST00000382086		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
Frame-shit	ENST00000455418	ENST00000382084		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
In-frame	ENST00000455418	ENST00000400234		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
5CDS-5UTR	ENST00000455418	ENST00000461833		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
5CDS-intron	ENST00000455418	ENST00000382086		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PITPNB	chr22	28292540	-	RFPL3S	chr22	32756826	-
In-frame	ENST00000329153	ENST00000261699		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
In-frame	ENST00000329153	ENST00000267436		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
In-frame	ENST00000329153	ENST00000421284		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000329153	ENST00000555423		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000329153	ENST00000555610		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000329153	ENST00000556393		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000417684	ENST00000261699		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000417684	ENST00000267436		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000417684	ENST00000421284		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-intron	ENST00000417684	ENST00000555423		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-intron	ENST00000417684	ENST00000555610		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-intron	ENST00000417684	ENST00000556393		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000559832	ENST00000261699		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000559832	ENST00000267436		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000559832	ENST00000421284		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-intron	ENST00000559832	ENST00000555423		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-intron	ENST00000559832	ENST00000555610		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
intron-intron	ENST00000559832	ENST00000556393		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	PLEKHH1	chr14	68008710	+	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000487861	ENST00000381232		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487861	ENST00000555818		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487861	ENST00000358550		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487861	ENST00000537413		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487861	ENST00000554874		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000471583	ENST00000381232		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000471583	ENST00000555818		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000471583	ENST00000358550		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000471583	ENST00000537413		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000471583	ENST00000554874		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487270	ENST00000381232		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487270	ENST00000555818		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487270	ENST00000358550		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487270	ENST00000537413		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000487270	ENST00000554874		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000488612	ENST00000381232		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000488612	ENST00000555818		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000488612	ENST00000358550		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000488612	ENST00000537413		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000488612	ENST00000554874		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000390683	ENST00000381232		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000390683	ENST00000555818		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000390683	ENST00000358550		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000390683	ENST00000537413		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
5CDS-intron	ENST00000390683	ENST00000554874		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
intron-intron	ENST00000469165	ENST00000381232		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
intron-intron	ENST00000469165	ENST00000555818		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
intron-intron	ENST00000469165	ENST00000358550		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
intron-intron	ENST00000469165	ENST00000537413		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
intron-intron	ENST00000469165	ENST00000554874		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	RAD51B	chr14	68301913	+	SIPA1L1	chr14	72043252	+
intron-3CDS	ENST00000381232	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000381232	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000381232	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000381232	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000381232	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000555818	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000555818	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000555818	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000555818	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000555818	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000358550	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000358550	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000358550	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000358550	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000358550	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000537413	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000537413	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000537413	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000537413	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000537413	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000554874	ENST00000216277		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3CDS	ENST00000554874	ENST00000557320		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000554874	ENST00000554130		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000554874	ENST00000557471		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
intron-3UTR	ENST00000554874	ENST00000392990		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SIPA1L1	chr14	71787898	+	PAPOLA	chr14	96986392	+
5UTR-3CDS	ENST00000437398	ENST00000413389		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-3CDS	ENST00000437398	ENST00000326010		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-intron	ENST00000437398	ENST00000382760		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-intron	ENST00000437398	ENST00000498140		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-3CDS	ENST00000314328	ENST00000413389		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-3CDS	ENST00000314328	ENST00000326010		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-intron	ENST00000314328	ENST00000382760		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-intron	ENST00000314328	ENST00000498140		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-3CDS	ENST00000541492	ENST00000413389		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-3CDS	ENST00000541492	ENST00000326010		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-intron	ENST00000541492	ENST00000382760		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-intron	ENST00000541492	ENST00000498140		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
3UTR-3CDS	ENST00000416735	ENST00000413389		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
3UTR-3CDS	ENST00000416735	ENST00000326010		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
3UTR-intron	ENST00000416735	ENST00000382760		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
3UTR-intron	ENST00000416735	ENST00000498140		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	SPECC1L	chr22	24666951	+	UPB1	chr22	24906717	+
5UTR-3CDS	ENST00000216639	ENST00000311852		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	VRK1	chr14	97263784	+	MMP14	chr14	23312466	+
5UTR-3UTR	ENST00000216639	ENST00000548162		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	VRK1	chr14	97263784	+	MMP14	chr14	23312466	+
intron-3CDS	ENST00000555067	ENST00000311852		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	VRK1	chr14	97263784	+	MMP14	chr14	23312466	+
intron-3UTR	ENST00000555067	ENST00000548162		TCGA	LD	BLCA	TCGA-XF-AAMW-01A	VRK1	chr14	97263784	+	MMP14	chr14	23312466	+
intron-intron	ENST00000389532	ENST00000371671		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000389532	ENST00000371663		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000389532	ENST00000311502		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000389532	ENST00000357466		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000389532	ENST00000432842		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000389532	ENST00000371675		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000389532	ENST00000466096		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000371671		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000371663		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000311502		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000357466		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000432842		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000371675		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000312405	ENST00000466096		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000371671		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000371663		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000311502		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000357466		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000432842		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000371675		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000483991	ENST00000466096		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000371671		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000371663		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000311502		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000357466		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000432842		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000371675		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
intron-intron	ENST00000409386	ENST00000466096		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	CAMSAP1	chr9	138795844	-	RABL6	chr9	139707711	+
Frame-shit	ENST00000367843	ENST00000589222		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000407086		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000390652		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000408905		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000588462		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000585744		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367843	ENST00000588874		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000367843	ENST00000585812		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000589222		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000407086		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000390652		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000408905		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000588462		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000585744		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000432587	ENST00000588874		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000432587	ENST00000585812		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000589222		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000407086		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000390652		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000408905		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000588462		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000585744		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000312263	ENST00000588874		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-intron	ENST00000312263	ENST00000585812		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000589222		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000407086		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000390652		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000408905		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000588462		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000585744		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
Frame-shit	ENST00000367840	ENST00000588874		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000367840	ENST00000585812		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000589222		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000407086		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000390652		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000408905		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000588462		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000585744		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000470919	ENST00000588874		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
intron-intron	ENST00000470919	ENST00000585812		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	DCAF6	chr1	167992285	+	BCAS3	chr17	58987893	+
In-frame	ENST00000335255	ENST00000313056		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	FOXK2	chr17	80478183	+	OGFOD3	chr17	80367286	-
In-frame	ENST00000335255	ENST00000329197		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	FOXK2	chr17	80478183	+	OGFOD3	chr17	80367286	-
5CDS-intron	ENST00000335255	ENST00000578287		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	FOXK2	chr17	80478183	+	OGFOD3	chr17	80367286	-
intron-3CDS	ENST00000529652	ENST00000313056		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	FOXK2	chr17	80478183	+	OGFOD3	chr17	80367286	-
intron-3CDS	ENST00000529652	ENST00000329197		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	FOXK2	chr17	80478183	+	OGFOD3	chr17	80367286	-
intron-intron	ENST00000529652	ENST00000578287		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	FOXK2	chr17	80478183	+	OGFOD3	chr17	80367286	-
5CDS-intron	ENST00000225388	ENST00000431468		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
5CDS-intron	ENST00000225388	ENST00000438614		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
5CDS-5UTR	ENST00000225388	ENST00000536498		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
5CDS-5UTR	ENST00000225388	ENST00000226218		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
intron-intron	ENST00000579665	ENST00000431468		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
intron-intron	ENST00000579665	ENST00000438614		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
intron-5UTR	ENST00000579665	ENST00000536498		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
intron-5UTR	ENST00000579665	ENST00000226218		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	NUFIP2	chr17	27613010	-	VTN	chr17	26697291	-
5CDS-5UTR	ENST00000427662	ENST00000337478		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000427662	ENST00000278071		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000427662	ENST00000358187		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000369774	ENST00000337478		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000369774	ENST00000278071		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000369774	ENST00000358187		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000355946	ENST00000337478		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000355946	ENST00000278071		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000355946	ENST00000358187		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5UTR-5UTR	ENST00000315994	ENST00000337478		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5UTR-5UTR	ENST00000315994	ENST00000278071		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5UTR-5UTR	ENST00000315994	ENST00000358187		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000540321	ENST00000337478		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000540321	ENST00000278071		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000540321	ENST00000358187		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000538130	ENST00000337478		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000538130	ENST00000278071		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000538130	ENST00000358187		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SH3PXD2A	chr10	105420741	-	ITPRIP	chr10	106075822	-
5CDS-5UTR	ENST00000592540	ENST00000586702		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SPC24	chr19	11266293	-	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000592540	ENST00000294618		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SPC24	chr19	11266293	-	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000592540	ENST00000319867		TCGA	LD	BLCA	TCGA-XF-AAMX-01A	SPC24	chr19	11266293	-	DOCK6	chr19	11311728	-
Frame-shit	ENST00000548256	ENST00000274695		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000548256	ENST00000378624		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000548256	ENST00000378610		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5CDS-intron	ENST00000548256	ENST00000476517		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5UTR-3CDS	ENST00000551420	ENST00000274695		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5UTR-3CDS	ENST00000551420	ENST00000378624		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5UTR-3CDS	ENST00000551420	ENST00000378610		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5UTR-intron	ENST00000551420	ENST00000476517		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000300209	ENST00000274695		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000300209	ENST00000378624		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000300209	ENST00000378610		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5CDS-intron	ENST00000300209	ENST00000476517		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
3UTR-3CDS	ENST00000552307	ENST00000274695		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
3UTR-3CDS	ENST00000552307	ENST00000378624		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
3UTR-3CDS	ENST00000552307	ENST00000378610		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
3UTR-intron	ENST00000552307	ENST00000476517		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000333012	ENST00000274695		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000333012	ENST00000378624		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000333012	ENST00000378610		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
5CDS-intron	ENST00000333012	ENST00000476517		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	METTL21B	chr12	58166856	+	CDKAL1	chr6	21198252	+
In-frame	ENST00000389467	ENST00000533150		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000389467	ENST00000335715		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000389467	ENST00000395630		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000446231	ENST00000533150		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000446231	ENST00000335715		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000446231	ENST00000395630		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000565224	ENST00000533150		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000565224	ENST00000335715		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
In-frame	ENST00000565224	ENST00000395630		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
intron-3CDS	ENST00000567737	ENST00000533150		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
intron-3CDS	ENST00000567737	ENST00000335715		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
intron-3CDS	ENST00000567737	ENST00000395630		TCGA	LD	BLCA	TCGA-XF-AAMY-01A	SMG1	chr16	18907374	-	SULT1A2	chr16	28606996	-
intron-3CDS	ENST00000338675	ENST00000269886		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
intron-3CDS	ENST00000338675	ENST00000598564		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
intron-3CDS	ENST00000338675	ENST00000417295		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
In-frame	ENST00000382409	ENST00000269886		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
In-frame	ENST00000382409	ENST00000598564		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
In-frame	ENST00000382409	ENST00000417295		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
intron-3CDS	ENST00000525904	ENST00000269886		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
intron-3CDS	ENST00000525904	ENST00000598564		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
intron-3CDS	ENST00000525904	ENST00000417295		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	DEAF1	chr11	686858	-	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000450904	ENST00000540367		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450904	ENST00000376618		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450904	ENST00000265641		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450904	ENST00000539743		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000450904	ENST00000537756		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000450904	ENST00000538994		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000362034	ENST00000540367		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000362034	ENST00000376618		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000362034	ENST00000265641		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000362034	ENST00000539743		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000362034	ENST00000537756		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000362034	ENST00000538994		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
intron-3CDS	ENST00000567045	ENST00000540367		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
intron-3CDS	ENST00000567045	ENST00000376618		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
intron-3CDS	ENST00000567045	ENST00000265641		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
intron-3CDS	ENST00000567045	ENST00000539743		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
intron-intron	ENST00000567045	ENST00000537756		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
intron-intron	ENST00000567045	ENST00000538994		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	MRPL21	chr11	68660358	-	CPT1A	chr11	68527806	-
Frame-shit	ENST00000456845	ENST00000307599		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
5CDS-intron	ENST00000456845	ENST00000518826		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
Frame-shit	ENST00000412303	ENST00000307599		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
5CDS-intron	ENST00000412303	ENST00000518826		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
Frame-shit	ENST00000456397	ENST00000307599		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
5CDS-intron	ENST00000456397	ENST00000518826		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
In-frame	ENST00000397070	ENST00000307599		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
5CDS-intron	ENST00000397070	ENST00000518826		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
5UTR-3CDS	ENST00000522434	ENST00000307599		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
5UTR-intron	ENST00000522434	ENST00000518826		TCGA	LD	BLCA	TCGA-XF-AAMZ-01A	TM2D2	chr8	38851064	-	GOT1L1	chr8	37792004	-
Frame-shit	ENST00000370328	ENST00000373710		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370328	ENST00000536859		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370328	ENST00000373709		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370328	ENST00000536384		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000370328	ENST00000491976		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370325	ENST00000373710		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370325	ENST00000536859		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370325	ENST00000373709		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000370325	ENST00000536384		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000370325	ENST00000491976		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000393914	ENST00000373710		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000393914	ENST00000536859		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000393914	ENST00000373709		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000393914	ENST00000536384		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000393914	ENST00000491976		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483564	ENST00000373710		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483564	ENST00000536859		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483564	ENST00000373709		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483564	ENST00000536384		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000483564	ENST00000491976		TCGA	LD	BLCA	TCGA-XF-AAN3-01A	GABRE	chrX	151143042	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000407625	ENST00000446425		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000407625	ENST00000404924		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000407625	ENST00000309033		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000407625	ENST00000535786		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-3UTR	ENST00000420135	ENST00000446425		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000420135	ENST00000404924		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000420135	ENST00000309033		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000420135	ENST00000535786		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
intron-3UTR	ENST00000461972	ENST00000446425		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000461972	ENST00000404924		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000461972	ENST00000309033		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000461972	ENST00000535786		TCGA	LD	BLCA	TCGA-XF-AAN5-01A	FAM228B	chr2	24369956	+	UBXN2A	chr2	24181171	+
5CDS-intron	ENST00000274695	ENST00000541991		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-5UTR	ENST00000274695	ENST00000053469		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-5UTR	ENST00000274695	ENST00000394237		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-intron	ENST00000274695	ENST00000372958		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-intron	ENST00000378624	ENST00000541991		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-5UTR	ENST00000378624	ENST00000053469		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-5UTR	ENST00000378624	ENST00000394237		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-intron	ENST00000378624	ENST00000372958		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-intron	ENST00000378610	ENST00000541991		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-5UTR	ENST00000378610	ENST00000053469		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-5UTR	ENST00000378610	ENST00000394237		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
5CDS-intron	ENST00000378610	ENST00000372958		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
intron-intron	ENST00000476517	ENST00000541991		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
intron-5UTR	ENST00000476517	ENST00000053469		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
intron-5UTR	ENST00000476517	ENST00000394237		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
intron-intron	ENST00000476517	ENST00000372958		TCGA	LD	BLCA	TCGA-XF-AAN7-01A	CDKAL1	chr6	21000603	+	GUCA1A	chr6	42130658	+
Frame-shit	ENST00000375571	ENST00000349714		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000359226		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000374384		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000374380		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000374385		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000374377		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000397556		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000375571	ENST00000407996		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000375571	ENST00000540457		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000375571	ENST00000542501		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000375571	ENST00000397554		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000375571	ENST00000491125		TCGA	LD	BLCA	TCGA-YC-A89H-01A	MAPRE1	chr20	31413854	+	UQCC1	chr20	33935075	-
intron-3CDS	ENST00000424085	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000424085	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000424085	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000257075	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000257075	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000257075	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000373747	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000373747	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000373747	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000426105	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000426105	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000426105	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000440538	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000440538	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000440538	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000373741	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000373741	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000373741	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000423018	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000423018	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000423018	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000373742	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000373742	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000373742	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000336798		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000339394		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000490546	ENST00000471567		TCGA	LD	BLCA	TCGA-ZF-A9R1-01A	PUM1	chr1	31532146	-	SDC3	chr1	31351587	-
In-frame	ENST00000353024	ENST00000368947		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5CDS-3UTR	ENST00000353024	ENST00000474997		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
In-frame	ENST00000392712	ENST00000368947		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5CDS-3UTR	ENST00000392712	ENST00000474997		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
In-frame	ENST00000368849	ENST00000368947		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5CDS-3UTR	ENST00000368849	ENST00000474997		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
In-frame	ENST00000368848	ENST00000368947		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5CDS-3UTR	ENST00000368848	ENST00000474997		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5UTR-3CDS	ENST00000538902	ENST00000368947		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5UTR-3UTR	ENST00000538902	ENST00000474997		TCGA	LD	BLCA	TCGA-ZF-A9R4-01A	TUFT1	chr1	151512902	+	ANXA9	chr1	150955814	+
5CDS-5UTR	ENST00000276416	ENST00000321613		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5CDS-5UTR	ENST00000276416	ENST00000454243		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5UTR-5UTR	ENST00000519513	ENST00000321613		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5UTR-5UTR	ENST00000519513	ENST00000454243		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
intron-5UTR	ENST00000399977	ENST00000321613		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
intron-5UTR	ENST00000399977	ENST00000454243		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5UTR-5UTR	ENST00000519335	ENST00000321613		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5UTR-5UTR	ENST00000519335	ENST00000454243		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5CDS-5UTR	ENST00000520292	ENST00000321613		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5CDS-5UTR	ENST00000520292	ENST00000454243		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5CDS-5UTR	ENST00000522268	ENST00000321613		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5CDS-5UTR	ENST00000522268	ENST00000454243		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	BIN3	chr8	22526557	-	PHYHIP	chr8	22085899	-
5CDS-5UTR	ENST00000261674	ENST00000389560		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000261674	ENST00000443539		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000261674	ENST00000392352		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000261674	ENST00000361109		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000261674	ENST00000376625		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-intron	ENST00000261674	ENST00000475841		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000541286	ENST00000389560		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000541286	ENST00000443539		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000541286	ENST00000392352		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000541286	ENST00000361109		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000541286	ENST00000376625		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-intron	ENST00000541286	ENST00000475841		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
intron-5UTR	ENST00000539506	ENST00000389560		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
intron-5UTR	ENST00000539506	ENST00000443539		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
intron-5UTR	ENST00000539506	ENST00000392352		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
intron-5UTR	ENST00000539506	ENST00000361109		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
intron-5UTR	ENST00000539506	ENST00000376625		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
intron-intron	ENST00000539506	ENST00000475841		TCGA	LD	BLCA	TCGA-ZF-A9R7-01A	SFSWAP	chr12	132262875	+	EP400NL	chr12	132588542	+
5CDS-5UTR	ENST00000357668	ENST00000584755		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357668	ENST00000583708		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357668	ENST00000584398		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357668	ENST00000578713		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000518721	ENST00000584755		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000518721	ENST00000583708		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000518721	ENST00000584398		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000518721	ENST00000578713		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000520625	ENST00000584755		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000520625	ENST00000583708		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000520625	ENST00000584398		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000520625	ENST00000578713		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	ASAP1	chr8	131226802	-	UBBP4	chr17	21730693	+
5UTR-3CDS	ENST00000299293	ENST00000331471		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000488961		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000330891		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000553096		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000476098		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000266661		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000551160		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000393365		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000299293	ENST00000533674		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-3CDS	ENST00000549921	ENST00000331471		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000488961		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000330891		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000553096		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000476098		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000266661		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000551160		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000393365		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000549921	ENST00000533674		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-3CDS	ENST00000550389	ENST00000331471		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000488961		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000330891		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000553096		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000476098		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000266661		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000551160		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000393365		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000550389	ENST00000533674		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-3CDS	ENST00000397997	ENST00000331471		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000488961		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000330891		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000553096		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000476098		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000266661		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000551160		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000393365		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
intron-intron	ENST00000397997	ENST00000533674		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	FRS2	chr12	69931763	+	BEST3	chr12	70037567	-
5CDS-5UTR	ENST00000519716	ENST00000339093		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000519716	ENST00000596358		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000519716	ENST00000391853		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000252773	ENST00000339093		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000252773	ENST00000596358		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000252773	ENST00000391853		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000428389	ENST00000339093		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000428389	ENST00000596358		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000428389	ENST00000391853		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000551649	ENST00000339093		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000551649	ENST00000596358		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000551649	ENST00000391853		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000552293	ENST00000339093		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000552293	ENST00000596358		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000552293	ENST00000391853		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000550896	ENST00000339093		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000550896	ENST00000596358		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000550896	ENST00000391853		TCGA	LD	BLCA	TCGA-ZF-A9RC-01A	UNC13A	chr19	17728511	-	NOSIP	chr19	50063949	-
In-frame	ENST00000374566	ENST00000458258		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
In-frame	ENST00000374566	ENST00000334318		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000374566	ENST00000374257		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000374566	ENST00000374255		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000374566	ENST00000343327		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-intron	ENST00000374566	ENST00000487997		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
In-frame	ENST00000374557	ENST00000458258		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
In-frame	ENST00000374557	ENST00000334318		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000374557	ENST00000374257		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000374557	ENST00000374255		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000374557	ENST00000343327		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
5CDS-intron	ENST00000374557	ENST00000487997		TCGA	LD	BLCA	TCGA-ZF-A9RD-01A	EPB41L4B	chr9	112082421	-	PTBP3	chr9	115060196	-
Frame-shit	ENST00000335221	ENST00000269346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000335221	ENST00000529107		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000335221	ENST00000534346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000335221	ENST00000441391		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000321892	ENST00000269346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000321892	ENST00000529107		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000321892	ENST00000534346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000321892	ENST00000441391		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000306378	ENST00000269346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000306378	ENST00000529107		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000306378	ENST00000534346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000306378	ENST00000441391		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000424123	ENST00000269346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
Frame-shit	ENST00000424123	ENST00000529107		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000424123	ENST00000534346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
5CDS-intron	ENST00000424123	ENST00000441391		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
intron-3CDS	ENST00000577770	ENST00000269346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
intron-3CDS	ENST00000577770	ENST00000529107		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
intron-intron	ENST00000577770	ENST00000534346		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
intron-intron	ENST00000577770	ENST00000441391		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	BPTF	chr17	65822453	+	TTYH2	chr17	72233433	+
intron-3CDS	ENST00000593699	ENST00000307116		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000593699	ENST00000373008		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000593699	ENST00000263556		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000593699	ENST00000412021		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000593699	ENST00000440381		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000593699	ENST00000394890		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000372499	ENST00000307116		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000372499	ENST00000373008		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000372499	ENST00000263556		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000372499	ENST00000412021		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000372499	ENST00000440381		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000372499	ENST00000394890		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000496424	ENST00000307116		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000496424	ENST00000373008		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000496424	ENST00000263556		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000496424	ENST00000412021		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000496424	ENST00000440381		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000496424	ENST00000394890		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	C10orf11	chr10	77198252	+	P4HA1	chr10	74790128	-
intron-3CDS	ENST00000371953	ENST00000394375		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000371953	ENST00000608620		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000371953	ENST00000238983		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000371953	ENST00000355843		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000472832	ENST00000394375		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000472832	ENST00000608620		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000472832	ENST00000238983		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
intron-3CDS	ENST00000472832	ENST00000355843		TCGA	LD	BLCA	TCGA-ZF-A9RE-01A	PTEN	chr10	89624381	+	LIPF	chr10	90427326	+
Frame-shit	ENST00000260526	ENST00000370225		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000260526	ENST00000535881		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000260526	ENST00000536513		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000260526	ENST00000465352		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000260526	ENST00000535735		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
intron-3CDS	ENST00000482481	ENST00000370225		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
intron-intron	ENST00000482481	ENST00000535881		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
intron-intron	ENST00000482481	ENST00000536513		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
intron-intron	ENST00000482481	ENST00000465352		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
intron-intron	ENST00000482481	ENST00000535735		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
Frame-shit	ENST00000370217	ENST00000370225		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000370217	ENST00000535881		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000370217	ENST00000536513		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000370217	ENST00000465352		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
5CDS-intron	ENST00000370217	ENST00000535735		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	ARHGAP29	chr1	94696963	-	ABCA4	chr1	94578622	-
Frame-shit	ENST00000243501	ENST00000394607		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
Frame-shit	ENST00000243501	ENST00000302274		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
5CDS-5UTR	ENST00000243501	ENST00000506461		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
Frame-shit	ENST00000502283	ENST00000394607		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
Frame-shit	ENST00000502283	ENST00000302274		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
5CDS-5UTR	ENST00000502283	ENST00000506461		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
intron-3CDS	ENST00000502772	ENST00000394607		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
intron-3CDS	ENST00000502772	ENST00000302274		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
intron-5UTR	ENST00000502772	ENST00000506461		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	PLA2G12A	chr4	110650758	-	ELOVL6	chr4	110980910	-
Frame-shit	ENST00000254480	ENST00000456150		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
Frame-shit	ENST00000254480	ENST00000383738		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
Frame-shit	ENST00000254480	ENST00000264723		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
5CDS-intron	ENST00000254480	ENST00000465441		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
5UTR-3CDS	ENST00000425518	ENST00000456150		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
5UTR-3CDS	ENST00000425518	ENST00000383738		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
5UTR-3CDS	ENST00000425518	ENST00000264723		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
5UTR-intron	ENST00000425518	ENST00000465441		TCGA	LD	BLCA	TCGA-ZF-A9RF-01A	SMARCC1	chr3	47814307	-	CSPG5	chr3	47614364	-
In-frame	ENST00000263849	ENST00000520052		TCGA	LD	BLCA	TCGA-ZF-A9RL-01A	ZC2HC1A	chr8	79610748	+	ANGPT1	chr8	108276579	-
In-frame	ENST00000263849	ENST00000520734		TCGA	LD	BLCA	TCGA-ZF-A9RL-01A	ZC2HC1A	chr8	79610748	+	ANGPT1	chr8	108276579	-
5CDS-5UTR	ENST00000263849	ENST00000518386		TCGA	LD	BLCA	TCGA-ZF-A9RL-01A	ZC2HC1A	chr8	79610748	+	ANGPT1	chr8	108276579	-
intron-3CDS	ENST00000521176	ENST00000520052		TCGA	LD	BLCA	TCGA-ZF-A9RL-01A	ZC2HC1A	chr8	79610748	+	ANGPT1	chr8	108276579	-
intron-3CDS	ENST00000521176	ENST00000520734		TCGA	LD	BLCA	TCGA-ZF-A9RL-01A	ZC2HC1A	chr8	79610748	+	ANGPT1	chr8	108276579	-
intron-5UTR	ENST00000521176	ENST00000518386		TCGA	LD	BLCA	TCGA-ZF-A9RL-01A	ZC2HC1A	chr8	79610748	+	ANGPT1	chr8	108276579	-
Frame-shit	ENST00000261900	ENST00000301046		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	CCNT1	chr12	49099551	-	LALBA	chr12	48961800	-
5CDS-3UTR	ENST00000261900	ENST00000549817		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	CCNT1	chr12	49099551	-	LALBA	chr12	48961800	-
5UTR-5UTR	ENST00000443950	ENST00000334398		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000443950	ENST00000369439		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000443950	ENST00000461075		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000544000	ENST00000334398		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000544000	ENST00000369439		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000544000	ENST00000461075		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000357065	ENST00000334398		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000357065	ENST00000369439		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000357065	ENST00000461075		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000356053	ENST00000334398		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000356053	ENST00000369439		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000356053	ENST00000461075		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000337970	ENST00000334398		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000337970	ENST00000369439		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000337970	ENST00000461075		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000498176	ENST00000334398		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000498176	ENST00000369439		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000498176	ENST00000461075		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	HNRNPF	chr10	43890078	-	TMLHE	chrX	154774938	-
5UTR-3CDS	ENST00000358161	ENST00000291900		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
5UTR-intron	ENST00000358161	ENST00000494461		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
5UTR-3CDS	ENST00000372739	ENST00000291900		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
5UTR-intron	ENST00000372739	ENST00000494461		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
5UTR-3CDS	ENST00000372731	ENST00000291900		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
5UTR-intron	ENST00000372731	ENST00000494461		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
intron-3CDS	ENST00000475367	ENST00000291900		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
intron-intron	ENST00000475367	ENST00000494461		TCGA	LD	BLCA	TCGA-ZF-A9RM-01A	SPTAN1	chr9	131314975	+	ZER1	chr9	131505024	-
In-frame	ENST00000305135	ENST00000415389		TCGA	LD	BLCA	TCGA-ZF-A9RN-01A	YEATS2	chr3	183433050	+	HTR3E	chr3	183818273	+
In-frame	ENST00000305135	ENST00000425359		TCGA	LD	BLCA	TCGA-ZF-A9RN-01A	YEATS2	chr3	183433050	+	HTR3E	chr3	183818273	+
In-frame	ENST00000305135	ENST00000335304		TCGA	LD	BLCA	TCGA-ZF-A9RN-01A	YEATS2	chr3	183433050	+	HTR3E	chr3	183818273	+
Frame-shit	ENST00000305135	ENST00000436361		TCGA	LD	BLCA	TCGA-ZF-A9RN-01A	YEATS2	chr3	183433050	+	HTR3E	chr3	183818273	+
Frame-shit	ENST00000305135	ENST00000440596		TCGA	LD	BLCA	TCGA-ZF-A9RN-01A	YEATS2	chr3	183433050	+	HTR3E	chr3	183818273	+
Frame-shit	ENST00000368931	ENST00000368817		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	BNIPL	chr1	151011501	+	THEM5	chr1	151820769	-
Frame-shit	ENST00000295294	ENST00000368817		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	BNIPL	chr1	151011501	+	THEM5	chr1	151820769	-
intron-3CDS	ENST00000491386	ENST00000368817		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	BNIPL	chr1	151011501	+	THEM5	chr1	151820769	-
In-frame	ENST00000458013	ENST00000368814		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
5CDS-5UTR	ENST00000458013	ENST00000477437		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
5CDS-intron	ENST00000458013	ENST00000489410		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
In-frame	ENST00000368843	ENST00000368814		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
5CDS-5UTR	ENST00000368843	ENST00000477437		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
5CDS-intron	ENST00000368843	ENST00000489410		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
intron-3CDS	ENST00000368838	ENST00000368814		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
intron-5UTR	ENST00000368838	ENST00000477437		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
intron-intron	ENST00000368838	ENST00000489410		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
intron-3CDS	ENST00000482791	ENST00000368814		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
intron-5UTR	ENST00000482791	ENST00000477437		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
intron-intron	ENST00000482791	ENST00000489410		TCGA	LD	BLCA	TCGA-ZF-AA4R-01A	SNX27	chr1	151584988	+	THEM4	chr1	151849601	-
Frame-shit	ENST00000430627	ENST00000315392		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000430627	ENST00000493200		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000430627	ENST00000539608		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000430627	ENST00000444911		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000430627	ENST00000394316		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
Frame-shit	ENST00000447079	ENST00000315392		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000447079	ENST00000493200		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000447079	ENST00000539608		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000447079	ENST00000444911		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000447079	ENST00000394316		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
intron-3CDS	ENST00000559545	ENST00000315392		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000559545	ENST00000493200		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000559545	ENST00000539608		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000559545	ENST00000444911		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000559545	ENST00000394316		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	CDK12	chr17	37619370	+	PLXDC1	chr17	37243955	-
5UTR-3CDS	ENST00000455502	ENST00000491614		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
5UTR-3CDS	ENST00000455502	ENST00000378937		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
5UTR-3CDS	ENST00000455502	ENST00000537776		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
5UTR-5UTR	ENST00000455502	ENST00000378952		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
5UTR-5UTR	ENST00000455502	ENST00000378940		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
5UTR-3UTR	ENST00000455502	ENST00000378927		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000248572	ENST00000491614		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000248572	ENST00000378937		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000248572	ENST00000537776		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000248572	ENST00000378952		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000248572	ENST00000378940		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3UTR	ENST00000248572	ENST00000378927		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000429473	ENST00000491614		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000429473	ENST00000378937		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000429473	ENST00000537776		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000429473	ENST00000378952		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000429473	ENST00000378940		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3UTR	ENST00000429473	ENST00000378927		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000430875	ENST00000491614		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000430875	ENST00000378937		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000430875	ENST00000537776		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000430875	ENST00000378952		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000430875	ENST00000378940		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3UTR	ENST00000430875	ENST00000378927		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000428834	ENST00000491614		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000428834	ENST00000378937		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3CDS	ENST00000428834	ENST00000537776		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000428834	ENST00000378952		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-5UTR	ENST00000428834	ENST00000378940		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
intron-3UTR	ENST00000428834	ENST00000378927		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	GNGT1	chr7	93221083	+	NUDT5	chr10	12212769	-
5CDS-intron	ENST00000346872	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000346872	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000346872	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000394189	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000394189	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000394189	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000439167	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000439167	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000439167	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000535189	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000535189	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000535189	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377944	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377944	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377944	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377945	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377945	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377945	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377952	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377952	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377952	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377958	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377958	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000377958	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000346243	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000346243	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000346243	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000350532	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000350532	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000350532	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000351680	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000351680	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000351680	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000467757	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000467757	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000467757	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000439016	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000439016	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
5CDS-intron	ENST00000439016	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000583368	ENST00000264659		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000583368	ENST00000578925		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
intron-intron	ENST00000583368	ENST00000398579		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	IKZF3	chr17	37985640	-	SRCIN1	chr17	36752382	-
In-frame	ENST00000261425	ENST00000381938		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
5CDS-intron	ENST00000261425	ENST00000372489		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
In-frame	ENST00000508137	ENST00000381938		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
5CDS-intron	ENST00000508137	ENST00000372489		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
In-frame	ENST00000504108	ENST00000381938		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
5CDS-intron	ENST00000504108	ENST00000372489		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
In-frame	ENST00000359687	ENST00000381938		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
5CDS-intron	ENST00000359687	ENST00000372489		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
In-frame	ENST00000381930	ENST00000381938		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
5CDS-intron	ENST00000381930	ENST00000372489		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
In-frame	ENST00000261426	ENST00000381938		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
5CDS-intron	ENST00000261426	ENST00000372489		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	KLHL5	chr4	39116950	+	TMEM156	chr4	38972757	-
Frame-shit	ENST00000400105	ENST00000377799		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400105	ENST00000377766		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400105	ENST00000412821		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400105	ENST00000358282		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400105	ENST00000351358		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-5UTR	ENST00000400105	ENST00000457442		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000400105	ENST00000452380		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000400105	ENST00000488990		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000317931	ENST00000377799		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000317931	ENST00000377766		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000317931	ENST00000412821		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000317931	ENST00000358282		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000317931	ENST00000351358		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-5UTR	ENST00000317931	ENST00000457442		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000317931	ENST00000452380		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000317931	ENST00000488990		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000284898	ENST00000377799		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000284898	ENST00000377766		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000284898	ENST00000412821		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000284898	ENST00000358282		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000284898	ENST00000351358		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-5UTR	ENST00000284898	ENST00000457442		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000284898	ENST00000452380		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000284898	ENST00000488990		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400104	ENST00000377799		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400104	ENST00000377766		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400104	ENST00000412821		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400104	ENST00000358282		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000400104	ENST00000351358		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-5UTR	ENST00000400104	ENST00000457442		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000400104	ENST00000452380		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000400104	ENST00000488990		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
In-frame	ENST00000535782	ENST00000377799		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000535782	ENST00000377766		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
In-frame	ENST00000535782	ENST00000412821		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
Frame-shit	ENST00000535782	ENST00000358282		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
In-frame	ENST00000535782	ENST00000351358		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-5UTR	ENST00000535782	ENST00000457442		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000535782	ENST00000452380		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-intron	ENST00000535782	ENST00000488990		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-3CDS	ENST00000578677	ENST00000377799		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-3CDS	ENST00000578677	ENST00000377766		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-3CDS	ENST00000578677	ENST00000412821		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-3CDS	ENST00000578677	ENST00000358282		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-3CDS	ENST00000578677	ENST00000351358		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-5UTR	ENST00000578677	ENST00000457442		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-intron	ENST00000578677	ENST00000452380		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
intron-intron	ENST00000578677	ENST00000488990		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	L3MBTL4	chr18	6237963	-	TRDMT1	chr10	17216659	-
5CDS-5UTR	ENST00000378137	ENST00000394246		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000378137	ENST00000269582		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000378137	ENST00000581428		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000325718	ENST00000394246		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000325718	ENST00000269582		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000325718	ENST00000581428		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
intron-5UTR	ENST00000579179	ENST00000394246		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
intron-5UTR	ENST00000579179	ENST00000269582		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
intron-5UTR	ENST00000579179	ENST00000581428		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	PNMT	chr17	37825882	+
Frame-shit	ENST00000378137	ENST00000309889		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	TCAP	chr17	37821626	+
In-frame	ENST00000378137	ENST00000578283		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	TCAP	chr17	37821626	+
Frame-shit	ENST00000325718	ENST00000309889		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	TCAP	chr17	37821626	+
In-frame	ENST00000325718	ENST00000578283		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	TCAP	chr17	37821626	+
intron-3CDS	ENST00000579179	ENST00000309889		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	TCAP	chr17	37821626	+
intron-3CDS	ENST00000579179	ENST00000578283		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	MLLT6	chr17	36861994	+	TCAP	chr17	37821626	+
intron-3CDS	ENST00000397109	ENST00000271732		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-3CDS	ENST00000397109	ENST00000540514		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-intron	ENST00000397109	ENST00000479757		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5UTR-3CDS	ENST00000337354	ENST00000271732		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5UTR-3CDS	ENST00000337354	ENST00000540514		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5UTR-intron	ENST00000337354	ENST00000479757		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
In-frame	ENST00000350697	ENST00000271732		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
In-frame	ENST00000350697	ENST00000540514		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5CDS-intron	ENST00000350697	ENST00000479757		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-3CDS	ENST00000397117	ENST00000271732		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-3CDS	ENST00000397117	ENST00000540514		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-intron	ENST00000397117	ENST00000479757		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5UTR-3CDS	ENST00000383801	ENST00000271732		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5UTR-3CDS	ENST00000383801	ENST00000540514		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
5UTR-intron	ENST00000383801	ENST00000479757		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-3CDS	ENST00000492602	ENST00000271732		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-3CDS	ENST00000492602	ENST00000540514		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-intron	ENST00000492602	ENST00000479757		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SEC13	chr3	10362734	-	GOLPH3L	chr1	150634404	-
intron-3CDS	ENST00000264659	ENST00000225428		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36731123	-	CWC25	chr17	36977326	-
intron-5UTR	ENST00000264659	ENST00000536127		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36731123	-	CWC25	chr17	36977326	-
In-frame	ENST00000578925	ENST00000225428		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36731123	-	CWC25	chr17	36977326	-
5CDS-5UTR	ENST00000578925	ENST00000536127		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36731123	-	CWC25	chr17	36977326	-
intron-3CDS	ENST00000398579	ENST00000225428		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36731123	-	CWC25	chr17	36977326	-
intron-5UTR	ENST00000398579	ENST00000536127		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36731123	-	CWC25	chr17	36977326	-
intron-3CDS	ENST00000264659	ENST00000225426		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36761886	-	PSMB3	chr17	36918664	+
intron-3CDS	ENST00000578925	ENST00000225426		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36761886	-	PSMB3	chr17	36918664	+
intron-3CDS	ENST00000398579	ENST00000225426		TCGA	LD	BLCA	TCGA-ZF-AA4T-01A	SRCIN1	chr17	36761886	-	PSMB3	chr17	36918664	+
5CDS-intron	ENST00000258111	ENST00000283228		TCGA	LD	BLCA	TCGA-ZF-AA4U-01A	KCNMB4	chr12	70828072	+	PTPRR	chr12	71148160	-
5CDS-5UTR	ENST00000258111	ENST00000440835		TCGA	LD	BLCA	TCGA-ZF-AA4U-01A	KCNMB4	chr12	70828072	+	PTPRR	chr12	71148160	-
5CDS-intron	ENST00000258111	ENST00000537619		TCGA	LD	BLCA	TCGA-ZF-AA4U-01A	KCNMB4	chr12	70828072	+	PTPRR	chr12	71148160	-
5CDS-intron	ENST00000258111	ENST00000378778		TCGA	LD	BLCA	TCGA-ZF-AA4U-01A	KCNMB4	chr12	70828072	+	PTPRR	chr12	71148160	-
5CDS-intron	ENST00000258111	ENST00000342084		TCGA	LD	BLCA	TCGA-ZF-AA4U-01A	KCNMB4	chr12	70828072	+	PTPRR	chr12	71148160	-
5CDS-intron	ENST00000258111	ENST00000549308		TCGA	LD	BLCA	TCGA-ZF-AA4U-01A	KCNMB4	chr12	70828072	+	PTPRR	chr12	71148160	-
3UTR-3CDS	ENST00000435070	ENST00000512944		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-intron	ENST00000435070	ENST00000510441		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-intron	ENST00000435070	ENST00000315013		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-3CDS	ENST00000456847	ENST00000512944		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-intron	ENST00000456847	ENST00000510441		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-intron	ENST00000456847	ENST00000315013		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-3CDS	ENST00000266679	ENST00000512944		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-intron	ENST00000266679	ENST00000510441		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
3UTR-intron	ENST00000266679	ENST00000315013		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
intron-3CDS	ENST00000550987	ENST00000512944		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
intron-intron	ENST00000550987	ENST00000510441		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
intron-intron	ENST00000550987	ENST00000315013		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
Frame-shit	ENST00000551516	ENST00000512944		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
5CDS-intron	ENST00000551516	ENST00000510441		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
5CDS-intron	ENST00000551516	ENST00000315013		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CPSF6	chr12	69656342	+	EXOC3	chr5	464405	+
intron-5UTR	ENST00000398519	ENST00000306796		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
intron-5UTR	ENST00000398519	ENST00000354321		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
intron-5UTR	ENST00000314028	ENST00000306796		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
intron-5UTR	ENST00000314028	ENST00000354321		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
3UTR-5UTR	ENST00000392334	ENST00000306796		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
3UTR-5UTR	ENST00000392334	ENST00000354321		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
intron-5UTR	ENST00000578904	ENST00000306796		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
intron-5UTR	ENST00000578904	ENST00000354321		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	CSNK1D	chr17	80203852	-	DUS1L	chr17	80022945	-
Frame-shit	ENST00000354171	ENST00000300952		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	GPX4	chr19	1106458	+	MIDN	chr19	1256994	+
Frame-shit	ENST00000354171	ENST00000591446		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	GPX4	chr19	1106458	+	MIDN	chr19	1256994	+
Frame-shit	ENST00000589115	ENST00000300952		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	GPX4	chr19	1106458	+	MIDN	chr19	1256994	+
Frame-shit	ENST00000589115	ENST00000591446		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	GPX4	chr19	1106458	+	MIDN	chr19	1256994	+
Frame-shit	ENST00000396516	ENST00000381192		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
Frame-shit	ENST00000396516	ENST00000381187		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
Frame-shit	ENST00000396516	ENST00000381184		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
5CDS-3UTR	ENST00000396516	ENST00000482405		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
5CDS-intron	ENST00000396516	ENST00000381180		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
In-frame	ENST00000355758	ENST00000381192		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
In-frame	ENST00000355758	ENST00000381187		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
In-frame	ENST00000355758	ENST00000381184		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
5CDS-3UTR	ENST00000355758	ENST00000482405		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
5CDS-intron	ENST00000355758	ENST00000381180		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3CDS	ENST00000575984	ENST00000381192		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3CDS	ENST00000575984	ENST00000381187		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3CDS	ENST00000575984	ENST00000381184		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3UTR	ENST00000575984	ENST00000482405		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-intron	ENST00000575984	ENST00000381180		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3CDS	ENST00000575170	ENST00000381192		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3CDS	ENST00000575170	ENST00000381187		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3CDS	ENST00000575170	ENST00000381184		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-3UTR	ENST00000575170	ENST00000482405		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
intron-intron	ENST00000575170	ENST00000381180		TCGA	LD	BLCA	TCGA-ZF-AA4V-01A	ZC3H7A	chr16	11868092	-	CD99	chrY	2582463	+
5CDS-3UTR	ENST00000323274	ENST00000313949		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000371098		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000371075		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000371100		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371099		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371102		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323274	ENST00000464624		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000306120		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371095		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371085		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000354359		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000265620		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000306090		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323274	ENST00000371081		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000313949		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000371098		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000371075		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000371100		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371099		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371102		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000323250	ENST00000464624		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000306120		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371095		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371085		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000354359		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000265620		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000306090		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000323250	ENST00000371081		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000313949		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000371098		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000371075		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000371100		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371099		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371102		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000323224	ENST00000464624		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000306120		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371095		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371085		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000354359		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000265620		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000306090		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000323224	ENST00000371081		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000313949		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000371098		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000371075		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000371100		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371099		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371102		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581920	ENST00000464624		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000306120		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371095		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371085		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000354359		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000265620		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000306090		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
intron-intron	ENST00000581920	ENST00000371081		TCGA	LD	BLCA	TCGA-ZF-AA4X-01A	TYMS	chr18	662320	+	GNAS	chr20	57470667	+
In-frame	ENST00000304222	ENST00000581006		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ADORA2B	chr17	15848897	+	PIGL	chr17	16203202	+
In-frame	ENST00000304222	ENST00000498772		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ADORA2B	chr17	15848897	+	PIGL	chr17	16203202	+
In-frame	ENST00000304222	ENST00000225609		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ADORA2B	chr17	15848897	+	PIGL	chr17	16203202	+
In-frame	ENST00000304222	ENST00000395844		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ADORA2B	chr17	15848897	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000304222	ENST00000463810		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ADORA2B	chr17	15848897	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000194900	ENST00000333646		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000194900	ENST00000374102		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000194900	ENST00000374080		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
5CDS-intron	ENST00000194900	ENST00000462984		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000374360	ENST00000333646		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000374360	ENST00000374102		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000374360	ENST00000374080		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
5CDS-intron	ENST00000374360	ENST00000462984		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000374355	ENST00000333646		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000374355	ENST00000374102		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
Frame-shit	ENST00000374355	ENST00000374080		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
5CDS-intron	ENST00000374355	ENST00000462984		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-3CDS	ENST00000542398	ENST00000333646		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-3CDS	ENST00000542398	ENST00000374102		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-3CDS	ENST00000542398	ENST00000374080		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-intron	ENST00000542398	ENST00000462984		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-3CDS	ENST00000461646	ENST00000333646		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-3CDS	ENST00000461646	ENST00000374102		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-3CDS	ENST00000461646	ENST00000374080		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
intron-intron	ENST00000461646	ENST00000462984		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	DLG3	chrX	69674166	+	MED12	chrX	70347743	+
In-frame	ENST00000361574	ENST00000356663		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	R3HDM4	chr19	913087	-	TMEM259	chr19	1014472	-
In-frame	ENST00000361574	ENST00000333175		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	R3HDM4	chr19	913087	-	TMEM259	chr19	1014472	-
In-frame	ENST00000587975	ENST00000356663		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	R3HDM4	chr19	913087	-	TMEM259	chr19	1014472	-
In-frame	ENST00000587975	ENST00000333175		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	R3HDM4	chr19	913087	-	TMEM259	chr19	1014472	-
In-frame	ENST00000536230	ENST00000361131		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	TAB2	chr6	149718900	+	PPP1R14C	chr6	150535880	+
intron-3CDS	ENST00000392282	ENST00000361131		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	TAB2	chr6	149718900	+	PPP1R14C	chr6	150535880	+
In-frame	ENST00000538427	ENST00000361131		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	TAB2	chr6	149718900	+	PPP1R14C	chr6	150535880	+
In-frame	ENST00000367456	ENST00000361131		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	TAB2	chr6	149718900	+	PPP1R14C	chr6	150535880	+
intron-3CDS	ENST00000461481	ENST00000361131		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	TAB2	chr6	149718900	+	PPP1R14C	chr6	150535880	+
In-frame	ENST00000286332	ENST00000361131		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	TAB2	chr6	149718900	+	PPP1R14C	chr6	150535880	+
intron-3CDS	ENST00000600412	ENST00000324134		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000535162		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000351894		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000354278		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000391775		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000391772		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000391773		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000600412	ENST00000345770		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
Frame-shit	ENST00000396424	ENST00000324134		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000535162		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000351894		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000354278		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000391775		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000391772		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000391773		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5CDS-intron	ENST00000396424	ENST00000345770		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-3CDS	ENST00000598440	ENST00000324134		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000535162		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000351894		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000354278		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000391775		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000391772		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000391773		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
intron-intron	ENST00000598440	ENST00000345770		TCGA	LD	BLCA	TCGA-ZF-AA51-01A	ZNF665	chr19	53686137	-	NLRP12	chr19	54299283	-
5UTR-3CDS	ENST00000310865	ENST00000327896		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	NEURL3	chr2	97170996	-	FAM178B	chr2	97544230	-
5UTR-3CDS	ENST00000310865	ENST00000417561		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	NEURL3	chr2	97170996	-	FAM178B	chr2	97544230	-
5UTR-3CDS	ENST00000310865	ENST00000490605		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	NEURL3	chr2	97170996	-	FAM178B	chr2	97544230	-
5UTR-3CDS	ENST00000310865	ENST00000393526		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	NEURL3	chr2	97170996	-	FAM178B	chr2	97544230	-
5UTR-5UTR	ENST00000310865	ENST00000470789		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	NEURL3	chr2	97170996	-	FAM178B	chr2	97544230	-
intron-3UTR	ENST00000374437	ENST00000246024		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	ZNF485	chr10	44104798	+	TMX4	chr20	7958271	-
intron-intron	ENST00000374437	ENST00000530935		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	ZNF485	chr10	44104798	+	TMX4	chr20	7958271	-
5CDS-3UTR	ENST00000361807	ENST00000246024		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	ZNF485	chr10	44104798	+	TMX4	chr20	7958271	-
5CDS-intron	ENST00000361807	ENST00000530935		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	ZNF485	chr10	44104798	+	TMX4	chr20	7958271	-
5CDS-3UTR	ENST00000374435	ENST00000246024		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	ZNF485	chr10	44104798	+	TMX4	chr20	7958271	-
5CDS-intron	ENST00000374435	ENST00000530935		TCGA	LD	BLCA	TCGA-ZF-AA53-01A	ZNF485	chr10	44104798	+	TMX4	chr20	7958271	-
5UTR-3CDS	ENST00000399353	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399353	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399353	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399353	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399353	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399353	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399353	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399353	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381318	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381318	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381318	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381318	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381318	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381318	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000381318	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000381318	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381291	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381291	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381291	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381291	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381291	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381291	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000381291	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000381291	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381285	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381285	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381285	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381285	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381285	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000381285	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000381285	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000381285	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399367	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399367	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399367	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399367	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399367	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399367	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399367	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399367	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399352	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399352	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399352	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399352	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399352	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399352	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399352	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399352	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399355	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399355	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399355	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399355	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399355	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399355	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399355	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399355	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399349	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399349	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399349	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399349	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399349	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-3CDS	ENST00000399349	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399349	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5UTR-intron	ENST00000399349	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399338	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399338	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399338	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399338	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399338	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399338	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000399338	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000399338	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000379960	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000379960	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000379960	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000379960	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000379960	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000379960	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000379960	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000379960	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000437442	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000437442	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000437442	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000437442	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000437442	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000437442	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000437442	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000437442	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399326	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399326	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399326	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399326	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399326	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000399326	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000399326	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000399326	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000488166	ENST00000381554		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000488166	ENST00000290244		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000488166	ENST00000381540		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000488166	ENST00000445393		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000488166	ENST00000361534		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-3CDS	ENST00000488166	ENST00000413017		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000488166	ENST00000480893		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
intron-intron	ENST00000488166	ENST00000399442		TCGA	LD	BLCA	TCGA-ZF-AA56-01A	ITSN1	chr21	35015019	+	CRYZL1	chr21	34997066	-
5CDS-3UTR	ENST00000251527	ENST00000464336		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
5CDS-5UTR	ENST00000251527	ENST00000442702		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
5CDS-5UTR	ENST00000251527	ENST00000369187		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
intron-3UTR	ENST00000497111	ENST00000464336		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
intron-5UTR	ENST00000497111	ENST00000442702		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
intron-5UTR	ENST00000497111	ENST00000369187		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
5CDS-3UTR	ENST00000435514	ENST00000464336		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
5CDS-5UTR	ENST00000435514	ENST00000442702		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
5CDS-5UTR	ENST00000435514	ENST00000369187		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	ESYT2	chr7	158536220	-	NBPF15	chr1	148577358	-
5UTR-3CDS	ENST00000436066	ENST00000221801		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	PLEKHF1	chr19	30156412	+	FBL	chr19	40325453	-
5UTR-5UTR	ENST00000436066	ENST00000593503		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	PLEKHF1	chr19	30156412	+	FBL	chr19	40325453	-
5UTR-3CDS	ENST00000592810	ENST00000221801		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	PLEKHF1	chr19	30156412	+	FBL	chr19	40325453	-
5UTR-5UTR	ENST00000592810	ENST00000593503		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	PLEKHF1	chr19	30156412	+	FBL	chr19	40325453	-
5CDS-intron	ENST00000487416	ENST00000592864		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000487416	ENST00000360228		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000487416	ENST00000573710		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000487416	ENST00000574822		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000597711	ENST00000592864		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000597711	ENST00000360228		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000597711	ENST00000573710		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000597711	ENST00000574822		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5UTR-intron	ENST00000397349	ENST00000592864		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5UTR-intron	ENST00000397349	ENST00000360228		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5UTR-intron	ENST00000397349	ENST00000573710		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5UTR-intron	ENST00000397349	ENST00000574822		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000358726	ENST00000592864		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000358726	ENST00000360228		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000358726	ENST00000573710		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000358726	ENST00000574822		TCGA	LD	BLCA	TCGA-ZF-AA5H-01A	SMIM7	chr19	16770206	-	CACNA1A	chr19	13366073	-
Frame-shit	ENST00000371711	ENST00000561890		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	B4GALT5	chr20	48257015	-	MUC22	chr6	30999973	+
5UTR-3CDS	ENST00000318948	ENST00000220764		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
5UTR-intron	ENST00000318948	ENST00000519007		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
5UTR-intron	ENST00000318948	ENST00000522161		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
intron-3CDS	ENST00000400199	ENST00000220764		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
intron-intron	ENST00000400199	ENST00000519007		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
intron-intron	ENST00000400199	ENST00000522161		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
5UTR-3CDS	ENST00000400202	ENST00000220764		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
5UTR-intron	ENST00000400202	ENST00000519007		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
5UTR-intron	ENST00000400202	ENST00000522161		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	NRIP1	chr21	16386665	-	DECR1	chr8	91054956	+
intron-3UTR	ENST00000228705	ENST00000474320		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	PPM1H	chr12	63327703	-	DNAJC15	chr13	43639822	+
intron-3UTR	ENST00000228705	ENST00000379221		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	PPM1H	chr12	63327703	-	DNAJC15	chr13	43639822	+
intron-3UTR	ENST00000551214	ENST00000474320		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	PPM1H	chr12	63327703	-	DNAJC15	chr13	43639822	+
intron-3UTR	ENST00000551214	ENST00000379221		TCGA	LD	BLCA	TCGA-ZF-AA5P-01A	PPM1H	chr12	63327703	-	DNAJC15	chr13	43639822	+
In-frame	ENST00000372530	ENST00000485511		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
In-frame	ENST00000372530	ENST00000394110		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
5CDS-intron	ENST00000372530	ENST00000472118		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
5CDS-intron	ENST00000372530	ENST00000461010		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
3UTR-3CDS	ENST00000443426	ENST00000485511		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
3UTR-3CDS	ENST00000443426	ENST00000394110		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
3UTR-intron	ENST00000443426	ENST00000472118		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
3UTR-intron	ENST00000443426	ENST00000461010		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
In-frame	ENST00000244533	ENST00000485511		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
In-frame	ENST00000244533	ENST00000394110		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
5CDS-intron	ENST00000244533	ENST00000472118		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
5CDS-intron	ENST00000244533	ENST00000461010		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ABCC10	chr6	43401098	+	PPP2R5D	chr6	42974201	+
Frame-shit	ENST00000369252	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369252	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369252	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369252	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369252	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
Frame-shit	ENST00000533213	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000533213	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000533213	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000533213	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000533213	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
Frame-shit	ENST00000277895	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000277895	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000277895	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000277895	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000277895	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
Frame-shit	ENST00000369266	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369266	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369266	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369266	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369266	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
Frame-shit	ENST00000392952	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000392952	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000392952	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000392952	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000392952	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
Frame-shit	ENST00000369253	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369253	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369253	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369253	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5CDS-intron	ENST00000369253	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
intron-3CDS	ENST00000477638	ENST00000380639		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
intron-intron	ENST00000477638	ENST00000543322		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
intron-intron	ENST00000477638	ENST00000503868		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
intron-intron	ENST00000477638	ENST00000536805		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
intron-intron	ENST00000477638	ENST00000460837		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ABLIM1	chr10	116203788	-	PTCD2	chr5	71630845	+
5UTR-3CDS	ENST00000357430	ENST00000446656		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACSL3	chr2	223725976	+	MOGAT1	chr2	223553063	+
5UTR-3CDS	ENST00000392066	ENST00000446656		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACSL3	chr2	223725976	+	MOGAT1	chr2	223553063	+
Frame-shit	ENST00000268070	ENST00000531613		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA8	chr5	140358534	+
5CDS-intron	ENST00000268070	ENST00000378123		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA8	chr5	140358534	+
intron-3CDS	ENST00000559976	ENST00000531613		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA8	chr5	140358534	+
intron-intron	ENST00000559976	ENST00000378123		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA8	chr5	140358534	+
Frame-shit	ENST00000294016	ENST00000302641		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	ADCY9	chr16	4038995	-	PRSS27	chr16	2766527	-
intron-3CDS	ENST00000571889	ENST00000302641		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	ADCY9	chr16	4038995	-	PRSS27	chr16	2766527	-
5CDS-5UTR	ENST00000539909	ENST00000358161		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000539909	ENST00000372739		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000539909	ENST00000372731		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-intron	ENST00000539909	ENST00000475367		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000286621	ENST00000358161		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000286621	ENST00000372739		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000286621	ENST00000372731		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-intron	ENST00000286621	ENST00000475367		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000372734	ENST00000358161		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000372734	ENST00000372739		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000372734	ENST00000372731		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-intron	ENST00000372734	ENST00000475367		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-5UTR	ENST00000541550	ENST00000358161		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-5UTR	ENST00000541550	ENST00000372739		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-5UTR	ENST00000541550	ENST00000372731		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-intron	ENST00000541550	ENST00000475367		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-5UTR	ENST00000467840	ENST00000358161		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-5UTR	ENST00000467840	ENST00000372739		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-5UTR	ENST00000467840	ENST00000372731		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
intron-intron	ENST00000467840	ENST00000475367		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	ADK	chr10	75984349	+	SPTAN1	chr9	131329017	+
5CDS-5UTR	ENST00000409236	ENST00000409528		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000409236	ENST00000409173		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000409236	ENST00000412401		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-intron	ENST00000409236	ENST00000486293		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000356421	ENST00000409528		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000356421	ENST00000409173		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000356421	ENST00000412401		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-intron	ENST00000356421	ENST00000486293		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000317233	ENST00000409528		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000317233	ENST00000409173		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000317233	ENST00000412401		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-intron	ENST00000317233	ENST00000486293		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000409579	ENST00000409528		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000409579	ENST00000409173		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-5UTR	ENST00000409579	ENST00000412401		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
5CDS-intron	ENST00000409579	ENST00000486293		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
intron-5UTR	ENST00000483600	ENST00000409528		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
intron-5UTR	ENST00000483600	ENST00000409173		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
intron-5UTR	ENST00000483600	ENST00000412401		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
intron-intron	ENST00000483600	ENST00000486293		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	AFF3	chr2	100209657	-	TMEM182	chr2	103379046	+
In-frame	ENST00000371839	ENST00000396153		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371839	ENST00000371778		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371839	ENST00000545823		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371839	ENST00000472808		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371838	ENST00000396153		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371838	ENST00000371778		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371838	ENST00000545823		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371838	ENST00000472808		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371836	ENST00000396153		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371836	ENST00000371778		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371836	ENST00000545823		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371836	ENST00000472808		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000334103	ENST00000396153		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000334103	ENST00000371778		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000334103	ENST00000545823		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000334103	ENST00000472808		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000497451	ENST00000396153		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000497451	ENST00000371778		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000497451	ENST00000545823		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000497451	ENST00000472808		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5UTR-3CDS	ENST00000560302	ENST00000305031		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
5UTR-intron	ENST00000560302	ENST00000507545		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
5UTR-3CDS	ENST00000394518	ENST00000305031		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
5UTR-intron	ENST00000394518	ENST00000507545		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
5UTR-3CDS	ENST00000361243	ENST00000305031		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
5UTR-intron	ENST00000361243	ENST00000507545		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
intron-3CDS	ENST00000560579	ENST00000305031		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
intron-intron	ENST00000560579	ENST00000507545		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
intron-3CDS	ENST00000394510	ENST00000305031		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
intron-intron	ENST00000394510	ENST00000507545		TCGA	RV	BRCA	TCGA-A8-A06U-01A	AKAP13	chr15	85924029	+	CHSY3	chr5	129243770	+
Frame-shit	ENST00000356239	ENST00000344691		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000356239	ENST00000325074		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000356239	ENST00000437180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000356239	ENST00000300305		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000356239	ENST00000399240		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000356239	ENST00000486278		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000356239	ENST00000494829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000356239	ENST00000358356		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000358100	ENST00000344691		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000358100	ENST00000325074		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000358100	ENST00000437180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000358100	ENST00000300305		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000358100	ENST00000399240		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000358100	ENST00000486278		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000358100	ENST00000494829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000358100	ENST00000358356		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000359028	ENST00000344691		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000359028	ENST00000325074		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000359028	ENST00000437180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000359028	ENST00000300305		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
Frame-shit	ENST00000359028	ENST00000399240		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000359028	ENST00000486278		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000359028	ENST00000494829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000359028	ENST00000358356		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000394564	ENST00000344691		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000394564	ENST00000325074		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000394564	ENST00000437180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000394564	ENST00000300305		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000394564	ENST00000399240		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-intron	ENST00000394564	ENST00000486278		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-intron	ENST00000394564	ENST00000494829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-intron	ENST00000394564	ENST00000358356		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000491695	ENST00000344691		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000491695	ENST00000325074		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000491695	ENST00000437180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000491695	ENST00000300305		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000491695	ENST00000399240		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-intron	ENST00000491695	ENST00000486278		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-intron	ENST00000491695	ENST00000494829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-intron	ENST00000491695	ENST00000358356		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	AKAP9	chr7	91699496	+	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000280772	ENST00000376741		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62374944	-	SP2	chr17	45992678	+
Frame-shit	ENST00000373827	ENST00000376741		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62374944	-	SP2	chr17	45992678	+
intron-3CDS	ENST00000355288	ENST00000376741		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62374944	-	SP2	chr17	45992678	+
intron-3CDS	ENST00000503366	ENST00000376741		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62374944	-	SP2	chr17	45992678	+
5UTR-3CDS	ENST00000510382	ENST00000376741		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62374944	-	SP2	chr17	45992678	+
intron-3CDS	ENST00000460468	ENST00000376741		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62374944	-	SP2	chr17	45992678	+
Frame-shit	ENST00000280772	ENST00000284885		TCGA	RV	BRCA	TCGA-AO-A12D-01A	ANK3	chr10	61894029	-	TMPRSS15	chr21	19687573	-
Frame-shit	ENST00000373827	ENST00000284885		TCGA	RV	BRCA	TCGA-AO-A12D-01A	ANK3	chr10	61894029	-	TMPRSS15	chr21	19687573	-
Frame-shit	ENST00000355288	ENST00000284885		TCGA	RV	BRCA	TCGA-AO-A12D-01A	ANK3	chr10	61894029	-	TMPRSS15	chr21	19687573	-
Frame-shit	ENST00000503366	ENST00000284885		TCGA	RV	BRCA	TCGA-AO-A12D-01A	ANK3	chr10	61894029	-	TMPRSS15	chr21	19687573	-
intron-3CDS	ENST00000510382	ENST00000284885		TCGA	RV	BRCA	TCGA-AO-A12D-01A	ANK3	chr10	61894029	-	TMPRSS15	chr21	19687573	-
intron-3CDS	ENST00000460468	ENST00000284885		TCGA	RV	BRCA	TCGA-AO-A12D-01A	ANK3	chr10	61894029	-	TMPRSS15	chr21	19687573	-
Frame-shit	ENST00000355303	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000355303	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000355303	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000355303	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000355303	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000355303	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000398543	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000398543	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000398543	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000398543	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000398543	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000398543	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000538023	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000538023	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000538023	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000538023	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000538023	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000538023	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000316296	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000316296	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000316296	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000316296	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000316296	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000316296	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000530676	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000530676	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000530676	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000530676	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000530676	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000530676	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000531349	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000531349	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000531349	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000531349	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000531349	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000531349	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
intron-3CDS	ENST00000525494	ENST00000353782		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
intron-3CDS	ENST00000525494	ENST00000356608		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
intron-3CDS	ENST00000525494	ENST00000394747		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
intron-3CDS	ENST00000525494	ENST00000394748		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
intron-intron	ENST00000525494	ENST00000537808		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
intron-5UTR	ENST00000525494	ENST00000565329		TCGA	RV	BRCA	TCGA-C8-A138-01A	ANO1	chr11	69972301	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000295974	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000295974	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000295974	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000295974	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000295974	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000295974	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000295974	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000295974	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000295974	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000295974	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000295974	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000295974	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000295974	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000513140	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000513140	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000513140	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000513140	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000513140	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000513140	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000513140	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000508593	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000508593	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000508593	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000508593	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000508593	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000508593	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000508593	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000506352	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000506352	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000506352	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000506352	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000506352	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000506352	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000506352	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-3CDS	ENST00000511572	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-intron	ENST00000511572	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-intron	ENST00000511572	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-intron	ENST00000511572	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-intron	ENST00000511572	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-intron	ENST00000511572	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
intron-5UTR	ENST00000511572	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000543538	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000543538	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000543538	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000543538	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000543538	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000543538	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000543538	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000502841	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000502841	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000502841	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000502841	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000502841	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000502841	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000502841	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000378707		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000359836		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000541735		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000343523		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000378677		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000357033		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
Frame-shit	ENST00000504305	ENST00000474231		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000504305	ENST00000378723		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000504305	ENST00000378702		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000504305	ENST00000361471		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000504305	ENST00000378680		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-intron	ENST00000504305	ENST00000288447		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5CDS-5UTR	ENST00000504305	ENST00000445312		TCGA	RV	BRCA	TCGA-A2-A0T0-01A	APBB2	chr4	40823888	-	DMD	chrX	31525570	-
5UTR-intron	ENST00000359373	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000359373	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-5UTR	ENST00000359373	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000359373	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000359373	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000495878	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000495878	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-5UTR	ENST00000495878	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000495878	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000495878	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000455638	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000455638	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-5UTR	ENST00000455638	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000455638	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000455638	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000393605	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000393605	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-5UTR	ENST00000393605	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000393605	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000393605	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000334211	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000334211	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-5UTR	ENST00000334211	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000334211	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000334211	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000393609	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000393609	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-5UTR	ENST00000393609	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000393609	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5UTR-intron	ENST00000393609	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000426523	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000426523	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-5UTR	ENST00000426523	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000426523	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000426523	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000429686	ENST00000530267		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000429686	ENST00000530535		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-5UTR	ENST00000429686	ENST00000529308		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000429686	ENST00000441408		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
intron-intron	ENST00000429686	ENST00000526425		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARAP1	chr11	72443560	-	USP35	chr11	77907282	+
5CDS-intron	ENST00000263674	ENST00000311713		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
5CDS-intron	ENST00000263674	ENST00000278856		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
5CDS-intron	ENST00000263674	ENST00000529106		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000263674	ENST00000525239		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000263674	ENST00000525752		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
5CDS-intron	ENST00000263674	ENST00000540620		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-intron	ENST00000536170	ENST00000311713		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-intron	ENST00000536170	ENST00000278856		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-intron	ENST00000536170	ENST00000529106		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-5UTR	ENST00000536170	ENST00000525239		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-5UTR	ENST00000536170	ENST00000525752		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-intron	ENST00000536170	ENST00000540620		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	ARHGEF17	chr11	73022875	+	WDR74	chr11	62607339	-
intron-intron	ENST00000338458	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000338458	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000496106	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000496106	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000498517	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000498517	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000296315	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000296315	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000413728	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000413728	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000497267	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000497267	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000495373	ENST00000295934		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
intron-intron	ENST00000495373	ENST00000473921		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ARHGEF3	chr3	57110774	-	HESX1	chr3	57234056	-
In-frame	ENST00000324856	ENST00000427245		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000525682		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000236342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000526219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000374185		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000360009		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
5CDS-3UTR	ENST00000324856	ENST00000531955		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000427245		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000525682		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000236342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000526219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000374185		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000360009		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
5CDS-3UTR	ENST00000457599	ENST00000531955		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000427245		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000525682		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000236342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000526219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000374185		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000360009		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
5CDS-3UTR	ENST00000374152	ENST00000531955		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000427245		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000525682		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000236342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000526219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000374185		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000360009		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3UTR	ENST00000540690	ENST00000531955		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
Frame-shit	ENST00000544915	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000544915	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000544915	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
Frame-shit	ENST00000395901	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000395901	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000395901	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
Frame-shit	ENST00000546179	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000546179	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000546179	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
Frame-shit	ENST00000311001	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000311001	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000311001	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
Frame-shit	ENST00000261178	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000261178	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000261178	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
Frame-shit	ENST00000266503	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000266503	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000266503	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
intron-3CDS	ENST00000539558	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
intron-intron	ENST00000539558	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
intron-intron	ENST00000539558	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
Frame-shit	ENST00000542388	ENST00000381340		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000542388	ENST00000545902		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-intron	ENST00000542388	ENST00000242737		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ARNTL2	chr12	27543172	+	ITPR2	chr12	26596583	-
5CDS-5UTR	ENST00000420843	ENST00000356341		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000420843	ENST00000530617		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000420843	ENST00000278568		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000420843	ENST00000528203		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000420843	ENST00000525542		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000393505	ENST00000356341		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000393505	ENST00000530617		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000393505	ENST00000278568		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000393505	ENST00000528203		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000393505	ENST00000525542		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000360025	ENST00000356341		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000360025	ENST00000530617		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000360025	ENST00000278568		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000360025	ENST00000528203		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000360025	ENST00000525542		TCGA	RV	BRCA	TCGA-A2-A04U-01A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000448504	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000448504	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000448504	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000448504	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000452479	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000452479	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000452479	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000452479	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
3UTR-5UTR	ENST00000582154	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
3UTR-5UTR	ENST00000582154	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
3UTR-5UTR	ENST00000582154	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
3UTR-intron	ENST00000582154	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27G-01A	ARSG	chr17	66397591	+	TEX2	chr17	62291602	-
Frame-shit	ENST00000375687	ENST00000562532		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000542461	ENST00000562532		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000375689	ENST00000562532		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000306058	ENST00000562532		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
3UTR-3CDS	ENST00000470145	ENST00000562532		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
In-frame	ENST00000238789	ENST00000361999		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
In-frame	ENST00000238789	ENST00000355123		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
5CDS-intron	ENST00000238789	ENST00000406921		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
5CDS-intron	ENST00000238789	ENST00000407704		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
5UTR-3CDS	ENST00000474583	ENST00000361999		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
5UTR-3CDS	ENST00000474583	ENST00000355123		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
5UTR-intron	ENST00000474583	ENST00000406921		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
5UTR-intron	ENST00000474583	ENST00000407704		TCGA	RV	BRCA	TCGA-LL-A740-01A	ATAD2B	chr2	24021008	-	ITSN2	chr2	24426652	-
intron-3CDS	ENST00000355221	ENST00000231461		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
intron-3CDS	ENST00000355221	ENST00000451528		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
intron-intron	ENST00000355221	ENST00000507360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
In-frame	ENST00000520188	ENST00000231461		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
In-frame	ENST00000520188	ENST00000451528		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
5CDS-intron	ENST00000520188	ENST00000507360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
Frame-shit	ENST00000359530	ENST00000231461		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
Frame-shit	ENST00000359530	ENST00000451528		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
5CDS-intron	ENST00000359530	ENST00000507360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
intron-3CDS	ENST00000523899	ENST00000231461		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
intron-3CDS	ENST00000523899	ENST00000451528		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
intron-intron	ENST00000523899	ENST00000507360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
Frame-shit	ENST00000396774	ENST00000231461		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
Frame-shit	ENST00000396774	ENST00000451528		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
5CDS-intron	ENST00000396774	ENST00000507360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	ATP6V1H	chr8	54723724	-	ST8SIA4	chr5	100231489	-
5CDS-intron	ENST00000389153	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000389153	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000608853	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000608853	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000377617	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000377617	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000550104	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000550104	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000542287	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000542287	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000535949	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-intron	ENST00000535949	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
intron-intron	ENST00000549455	ENST00000256151		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
intron-intron	ENST00000549455	ENST00000548126		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	ATXN2	chr12	111990084	-	CCDC59	chr12	82702094	-
5CDS-5UTR	ENST00000535206	ENST00000537089		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000535206	ENST00000377425		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000535206	ENST00000539936		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000535206	ENST00000541274		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000379731	ENST00000537089		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000379731	ENST00000377425		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000379731	ENST00000539936		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000379731	ENST00000541274		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
intron-5UTR	ENST00000541851	ENST00000537089		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
intron-5UTR	ENST00000541851	ENST00000377425		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
intron-5UTR	ENST00000541851	ENST00000539936		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
intron-5UTR	ENST00000541851	ENST00000541274		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	B4GALT1	chr9	33166756	-	AQP7	chr9	33386539	-
5CDS-5UTR	ENST00000589222	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000589222	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000407086	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000407086	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000390652	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000390652	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000408905	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000408905	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000588462	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000588462	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
intron-5UTR	ENST00000585744	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
intron-intron	ENST00000585744	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
intron-5UTR	ENST00000588874	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
intron-intron	ENST00000588874	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
intron-5UTR	ENST00000585812	ENST00000307078		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
intron-intron	ENST00000585812	ENST00000375702		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	BCAS3	chr17	58885437	+	AXIN2	chr17	63554854	-
Frame-shit	ENST00000589222	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000589222	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000589222	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
Frame-shit	ENST00000407086	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000407086	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000407086	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
Frame-shit	ENST00000390652	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000390652	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000390652	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
Frame-shit	ENST00000408905	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000408905	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000408905	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
Frame-shit	ENST00000588462	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000588462	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000588462	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
Frame-shit	ENST00000585744	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000585744	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000585744	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
Frame-shit	ENST00000588874	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000588874	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000588874	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
intron-3CDS	ENST00000585812	ENST00000184956		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
intron-intron	ENST00000585812	ENST00000585976		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
intron-intron	ENST00000585812	ENST00000585712		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	BCAS3	chr17	59093262	+	HEATR6	chr17	58128338	-
In-frame	ENST00000305877	ENST00000545383		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000305877	ENST00000262794		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000305877	ENST00000395858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-5UTR	ENST00000305877	ENST00000395843		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-5UTR	ENST00000305877	ENST00000540615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-intron	ENST00000305877	ENST00000395852		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-intron	ENST00000305877	ENST00000354853		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-3UTR	ENST00000305877	ENST00000475190		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000359540	ENST00000545383		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000359540	ENST00000262794		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000359540	ENST00000395858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-5UTR	ENST00000359540	ENST00000395843		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-5UTR	ENST00000359540	ENST00000540615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-intron	ENST00000359540	ENST00000395852		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-intron	ENST00000359540	ENST00000354853		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-3UTR	ENST00000359540	ENST00000475190		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000398512	ENST00000545383		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000398512	ENST00000262794		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
In-frame	ENST00000398512	ENST00000395858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-5UTR	ENST00000398512	ENST00000395843		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-5UTR	ENST00000398512	ENST00000540615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-intron	ENST00000398512	ENST00000395852		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-intron	ENST00000398512	ENST00000354853		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
5CDS-3UTR	ENST00000398512	ENST00000475190		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-3CDS	ENST00000436990	ENST00000545383		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-3CDS	ENST00000436990	ENST00000262794		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-3CDS	ENST00000436990	ENST00000395858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-5UTR	ENST00000436990	ENST00000395843		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-5UTR	ENST00000436990	ENST00000540615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-intron	ENST00000436990	ENST00000395852		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-intron	ENST00000436990	ENST00000354853		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
intron-3UTR	ENST00000436990	ENST00000475190		TCGA	RV	BRCA	TCGA-C8-A27A-01A	BCR	chr22	23524426	+	MOV10L1	chr22	50530430	+
Frame-shit	ENST00000370187	ENST00000398842		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000370187	ENST00000398809		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000370187	ENST00000461841		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000370187	ENST00000299366		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000370187	ENST00000224721		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000370187	ENST00000398788		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000370187	ENST00000475158		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000393441	ENST00000398842		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000393441	ENST00000398809		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000393441	ENST00000461841		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000393441	ENST00000299366		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000393441	ENST00000224721		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000393441	ENST00000398788		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000393441	ENST00000475158		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000408038	ENST00000398842		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000408038	ENST00000398809		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000408038	ENST00000461841		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000408038	ENST00000299366		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
Frame-shit	ENST00000408038	ENST00000224721		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000408038	ENST00000398788		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000408038	ENST00000475158		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000493877	ENST00000398842		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000493877	ENST00000398809		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000493877	ENST00000461841		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000493877	ENST00000299366		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000493877	ENST00000224721		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-intron	ENST00000493877	ENST00000398788		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
intron-intron	ENST00000493877	ENST00000475158		TCGA	RV	BRCA	TCGA-BH-A18U-01A	BTRC	chr10	103113985	+	CDH23	chr10	73269839	+
In-frame	ENST00000394806	ENST00000389153		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
In-frame	ENST00000394806	ENST00000608853		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
In-frame	ENST00000394806	ENST00000377617		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000394806	ENST00000550104		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000394806	ENST00000542287		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000394806	ENST00000535949		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-intron	ENST00000394806	ENST00000549455		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
In-frame	ENST00000285697	ENST00000389153		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
In-frame	ENST00000285697	ENST00000608853		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
In-frame	ENST00000285697	ENST00000377617		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000285697	ENST00000550104		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000285697	ENST00000542287		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000285697	ENST00000535949		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
5CDS-intron	ENST00000285697	ENST00000549455		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-3CDS	ENST00000564250	ENST00000389153		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-3CDS	ENST00000564250	ENST00000608853		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-3CDS	ENST00000564250	ENST00000377617		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-3UTR	ENST00000564250	ENST00000550104		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-3UTR	ENST00000564250	ENST00000542287		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-3UTR	ENST00000564250	ENST00000535949		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
intron-intron	ENST00000564250	ENST00000549455		TCGA	RV	BRCA	TCGA-A7-A425-01A	C16orf87	chr16	46864996	-	ATXN2	chr12	111891649	-
Frame-shit	ENST00000303142	ENST00000361354		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	C20orf196	chr20	5753689	+	NCKAP1	chr2	183868053	-
Frame-shit	ENST00000303142	ENST00000360982		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	C20orf196	chr20	5753689	+	NCKAP1	chr2	183868053	-
5CDS-intron	ENST00000303142	ENST00000478449		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	C20orf196	chr20	5753689	+	NCKAP1	chr2	183868053	-
Frame-shit	ENST00000378979	ENST00000361354		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	C20orf196	chr20	5753689	+	NCKAP1	chr2	183868053	-
Frame-shit	ENST00000378979	ENST00000360982		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	C20orf196	chr20	5753689	+	NCKAP1	chr2	183868053	-
5CDS-intron	ENST00000378979	ENST00000478449		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	C20orf196	chr20	5753689	+	NCKAP1	chr2	183868053	-
In-frame	ENST00000394303	ENST00000583610		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394303	ENST00000394294		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394303	ENST00000264658		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394303	ENST00000577399		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394310	ENST00000583610		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394310	ENST00000394294		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394310	ENST00000264658		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000394310	ENST00000577399		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000344140	ENST00000583610		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000344140	ENST00000394294		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000344140	ENST00000264658		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000344140	ENST00000577399		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000582877	ENST00000583610		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000582877	ENST00000394294		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000582877	ENST00000264658		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000582877	ENST00000577399		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CACNB1	chr17	37351137	-	FBXL20	chr17	37499494	-
In-frame	ENST00000264033	ENST00000361417		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CBL	chr11	119156276	+	PHLDB1	chr11	118514518	+
In-frame	ENST00000264033	ENST00000356063		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CBL	chr11	119156276	+	PHLDB1	chr11	118514518	+
5CDS-3UTR	ENST00000264033	ENST00000534672		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CBL	chr11	119156276	+	PHLDB1	chr11	118514518	+
5CDS-5UTR	ENST00000264033	ENST00000527898		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CBL	chr11	119156276	+	PHLDB1	chr11	118514518	+
5CDS-5UTR	ENST00000264033	ENST00000524713		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CBL	chr11	119156276	+	PHLDB1	chr11	118514518	+
Frame-shit	ENST00000394650	ENST00000367070		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	CCDC109B	chr4	110481592	+	C4BPA	chr1	207317163	+
3UTR-3CDS	ENST00000515114	ENST00000367070		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	CCDC109B	chr4	110481592	+	C4BPA	chr1	207317163	+
5CDS-5UTR	ENST00000310351	ENST00000430702		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000310351	ENST00000394020		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000310351	ENST00000257527		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000310351	ENST00000517905		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000488653	ENST00000430702		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000488653	ENST00000394020		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000488653	ENST00000257527		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000488653	ENST00000517905		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000485727	ENST00000430702		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000485727	ENST00000394020		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000485727	ENST00000257527		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000485727	ENST00000517905		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000489746	ENST00000430702		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000489746	ENST00000394020		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000489746	ENST00000257527		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000489746	ENST00000517905		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000433542	ENST00000430702		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000433542	ENST00000394020		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000433542	ENST00000257527		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
5CDS-5UTR	ENST00000433542	ENST00000517905		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
intron-5UTR	ENST00000483247	ENST00000430702		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
intron-5UTR	ENST00000483247	ENST00000394020		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
intron-5UTR	ENST00000483247	ENST00000257527		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
intron-5UTR	ENST00000483247	ENST00000517905		TCGA	RV	BRCA	TCGA-E2-A15F-01A	CCDC14	chr3	123667538	-	ADAM19	chr5	156991451	-
Frame-shit	ENST00000299300	ENST00000292174		TCGA	RV	BRCA	TCGA-E9-A22B-01A	CCT2	chr12	69995350	+	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000544368	ENST00000292174		TCGA	RV	BRCA	TCGA-E9-A22B-01A	CCT2	chr12	69995350	+	CXCR5	chr11	118754475	+
Frame-shit	ENST00000543146	ENST00000292174		TCGA	RV	BRCA	TCGA-E9-A22B-01A	CCT2	chr12	69995350	+	CXCR5	chr11	118754475	+
Frame-shit	ENST00000360469	ENST00000332836		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	CDH4	chr20	60348238	+	NLRP9	chr19	56244916	-
Frame-shit	ENST00000543233	ENST00000332836		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	CDH4	chr20	60348238	+	NLRP9	chr19	56244916	-
Frame-shit	ENST00000447540	ENST00000276297		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000447540	ENST00000358919		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000447540	ENST00000512044		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000447540	ENST00000316609		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000447540	ENST00000511869		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000447540	ENST00000510318		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000447540	ENST00000520226		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
Frame-shit	ENST00000566029	ENST00000276297		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000566029	ENST00000358919		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000566029	ENST00000512044		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000566029	ENST00000316609		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000566029	ENST00000511869		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000566029	ENST00000510318		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000566029	ENST00000520226		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
Frame-shit	ENST00000564845	ENST00000276297		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000564845	ENST00000358919		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000564845	ENST00000512044		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000564845	ENST00000316609		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000564845	ENST00000511869		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000564845	ENST00000510318		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000564845	ENST00000520226		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
Frame-shit	ENST00000398510	ENST00000276297		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000398510	ENST00000358919		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000398510	ENST00000512044		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000398510	ENST00000316609		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000398510	ENST00000511869		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000398510	ENST00000510318		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-intron	ENST00000398510	ENST00000520226		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-3CDS	ENST00000564582	ENST00000276297		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-intron	ENST00000564582	ENST00000358919		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-intron	ENST00000564582	ENST00000512044		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-intron	ENST00000564582	ENST00000316609		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-intron	ENST00000564582	ENST00000511869		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-intron	ENST00000564582	ENST00000510318		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
intron-intron	ENST00000564582	ENST00000520226		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CHD9	chr16	53308214	+	DLC1	chr8	13162811	-
5CDS-5UTR	ENST00000249806	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000249806	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000249806	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-intron	ENST00000249806	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000565471	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000565471	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000565471	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-intron	ENST00000565471	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-5UTR	ENST00000418702	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-5UTR	ENST00000418702	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-5UTR	ENST00000418702	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-intron	ENST00000418702	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000566347	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000566347	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000566347	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-intron	ENST00000566347	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
intron-5UTR	ENST00000538696	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
intron-5UTR	ENST00000538696	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
intron-5UTR	ENST00000538696	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
intron-intron	ENST00000538696	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000564752	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000564752	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-5UTR	ENST00000564752	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5CDS-intron	ENST00000564752	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-5UTR	ENST00000569336	ENST00000395407		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-5UTR	ENST00000569336	ENST00000561153		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-5UTR	ENST00000569336	ENST00000340965		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
5UTR-intron	ENST00000569336	ENST00000561027		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	CLN6	chr15	68521840	-	PAQR5	chr15	69629680	+
Frame-shit	ENST00000366669	ENST00000258229		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000366669	ENST00000344698		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000366669	ENST00000488780		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-5UTR	ENST00000366669	ENST00000520463		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000366669	ENST00000430153		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
Frame-shit	ENST00000535166	ENST00000258229		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000535166	ENST00000344698		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000535166	ENST00000488780		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-5UTR	ENST00000535166	ENST00000520463		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000535166	ENST00000430153		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
Frame-shit	ENST00000366668	ENST00000258229		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000366668	ENST00000344698		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000366668	ENST00000488780		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-5UTR	ENST00000366668	ENST00000520463		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000366668	ENST00000430153		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
Frame-shit	ENST00000534989	ENST00000258229		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000534989	ENST00000344698		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000534989	ENST00000488780		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-5UTR	ENST00000534989	ENST00000520463		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000534989	ENST00000430153		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
Frame-shit	ENST00000546013	ENST00000258229		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000546013	ENST00000344698		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000546013	ENST00000488780		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-5UTR	ENST00000546013	ENST00000520463		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
5CDS-intron	ENST00000546013	ENST00000430153		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
intron-3CDS	ENST00000490900	ENST00000258229		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
intron-intron	ENST00000490900	ENST00000344698		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
intron-intron	ENST00000490900	ENST00000488780		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
intron-5UTR	ENST00000490900	ENST00000520463		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
intron-intron	ENST00000490900	ENST00000430153		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	COG2	chr1	230814798	+	PCNXL2	chr1	233275601	-
Frame-shit	ENST00000416691	ENST00000379589		TCGA	RV	BRCA	TCGA-C8-A130-01A	COG6	chr13	40230016	+	LHFP	chr13	39952663	-
5CDS-intron	ENST00000416691	ENST00000495922		TCGA	RV	BRCA	TCGA-C8-A130-01A	COG6	chr13	40230016	+	LHFP	chr13	39952663	-
Frame-shit	ENST00000455146	ENST00000379589		TCGA	RV	BRCA	TCGA-C8-A130-01A	COG6	chr13	40230016	+	LHFP	chr13	39952663	-
5CDS-intron	ENST00000455146	ENST00000495922		TCGA	RV	BRCA	TCGA-C8-A130-01A	COG6	chr13	40230016	+	LHFP	chr13	39952663	-
intron-3CDS	ENST00000465775	ENST00000379589		TCGA	RV	BRCA	TCGA-C8-A130-01A	COG6	chr13	40230016	+	LHFP	chr13	39952663	-
intron-intron	ENST00000465775	ENST00000495922		TCGA	RV	BRCA	TCGA-C8-A130-01A	COG6	chr13	40230016	+	LHFP	chr13	39952663	-
5CDS-intron	ENST00000370096	ENST00000269586		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000370096	ENST00000444555		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000370096	ENST00000583123		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-intron	ENST00000353414	ENST00000269586		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000353414	ENST00000444555		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000353414	ENST00000583123		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-intron	ENST00000358392	ENST00000269586		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000358392	ENST00000444555		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000358392	ENST00000583123		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-intron	ENST00000512756	ENST00000269586		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000512756	ENST00000444555		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000512756	ENST00000583123		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
intron-intron	ENST00000461720	ENST00000269586		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
intron-5UTR	ENST00000461720	ENST00000444555		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
intron-5UTR	ENST00000461720	ENST00000583123		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	COL11A1	chr1	103400616	-	ARL5C	chr17	37322870	-
In-frame	ENST00000297268	ENST00000265441		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COL1A2	chr7	94055842	+	WNT2	chr7	116937930	-
5UTR-3CDS	ENST00000261401	ENST00000547776		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000329257		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000547010		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000341752		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000549558		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000550693		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000549025		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000549493		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000547446		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000333732		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000546568		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000332712		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000261401	ENST00000546960		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-intron	ENST00000261401	ENST00000550833		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000547776		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000329257		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000547010		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000341752		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000549558		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000550693		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000549025		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000549493		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000547446		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000333732		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000546568		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000332712		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000541050	ENST00000546960		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-intron	ENST00000541050	ENST00000550833		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000547776		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000329257		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000547010		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000341752		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000549558		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000550693		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000549025		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000549493		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000547446		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000333732		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000546568		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000332712		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-3CDS	ENST00000549384	ENST00000546960		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
5UTR-intron	ENST00000549384	ENST00000550833		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000547776		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000329257		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000547010		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000341752		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000549558		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000550693		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000549025		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000549493		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000547446		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000333732		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000546568		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000332712		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000421578	ENST00000546960		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-intron	ENST00000421578	ENST00000550833		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000547776		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000329257		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000547010		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000341752		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000549558		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000550693		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000549025		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000549493		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000547446		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000333732		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000546568		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000332712		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000420959	ENST00000546960		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-intron	ENST00000420959	ENST00000550833		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000547776		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000329257		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000547010		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000341752		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000549558		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000550693		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000549025		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000549493		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000547446		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000333732		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000546568		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000332712		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000549772	ENST00000546960		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
intron-intron	ENST00000549772	ENST00000550833		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	CORO1C	chr12	109125205	-	ANKS1B	chr12	99145300	-
In-frame	ENST00000405237	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000405237	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000405237	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000405237	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000405237	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000405237	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000405237	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000312108	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000440709	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000360719	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
In-frame	ENST00000457250	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
5UTR-3CDS	ENST00000434492	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000415957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000403066		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000215812		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000540910		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000401751		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000402286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
Frame-shit	ENST00000395650	ENST00000539629		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CPT1B	chr22	51016204	-	SEC14L3	chr22	30864683	-
intron-3CDS	ENST00000293493	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000293493	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000293493	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000339069	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000339069	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000339069	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000314537	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000314537	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000314537	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000352855	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000352855	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000352855	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000577353	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000577353	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000577353	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000398285	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000398285	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000398285	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000548791	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000548791	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000548791	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000551817	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000551817	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000551817	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000550606	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000550606	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000550606	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000552724	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000552724	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000552724	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000547258	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000547258	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000547258	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000551221	ENST00000375587		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000551221	ENST00000375579		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000551221	ENST00000375576		TCGA	RV	BRCA	TCGA-A8-A06P-01A	CRHR1	chr17	43861943	+	CENPP	chr9	95373596	+
In-frame	ENST00000324238	ENST00000321990		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	CRLF3	chr17	29151541	-	ATAD5	chr17	29185179	+
5UTR-3CDS	ENST00000544695	ENST00000321990		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	CRLF3	chr17	29151541	-	ATAD5	chr17	29185179	+
intron-3CDS	ENST00000577725	ENST00000321990		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	CRLF3	chr17	29151541	-	ATAD5	chr17	29185179	+
intron-3CDS	ENST00000368630	ENST00000368321		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-3CDS	ENST00000368630	ENST00000368320		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-intron	ENST00000368630	ENST00000368319		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-intron	ENST00000368630	ENST00000482337		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
In-frame	ENST00000368633	ENST00000368321		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
In-frame	ENST00000368633	ENST00000368320		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
5CDS-intron	ENST00000368633	ENST00000368319		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
5CDS-intron	ENST00000368633	ENST00000482337		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-3CDS	ENST00000476883	ENST00000368321		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-3CDS	ENST00000476883	ENST00000368320		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-intron	ENST00000476883	ENST00000368319		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
intron-intron	ENST00000476883	ENST00000482337		TCGA	RV	BRCA	TCGA-EW-A423-01A	CRTC2	chr1	153930821	-	KIAA0907	chr1	155887463	-
5CDS-intron	ENST00000304623	ENST00000471826		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000304623	ENST00000401867		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000304623	ENST00000379086		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000304623	ENST00000166534		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000304623	ENST00000360568		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000304623	ENST00000379104		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000304623	ENST00000379100		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-intron	ENST00000359640	ENST00000471826		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000359640	ENST00000401867		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000359640	ENST00000379086		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000359640	ENST00000166534		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000359640	ENST00000360568		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000359640	ENST00000379104		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000359640	ENST00000379100		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-intron	ENST00000511377	ENST00000471826		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000511377	ENST00000401867		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000511377	ENST00000379086		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000511377	ENST00000166534		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000511377	ENST00000360568		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000511377	ENST00000379104		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000511377	ENST00000379100		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-intron	ENST00000458100	ENST00000471826		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-5UTR	ENST00000458100	ENST00000401867		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-5UTR	ENST00000458100	ENST00000379086		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-5UTR	ENST00000458100	ENST00000166534		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-5UTR	ENST00000458100	ENST00000360568		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-5UTR	ENST00000458100	ENST00000379104		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
5UTR-5UTR	ENST00000458100	ENST00000379100		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-intron	ENST00000503622	ENST00000471826		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000503622	ENST00000401867		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000503622	ENST00000379086		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000503622	ENST00000166534		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000503622	ENST00000360568		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000503622	ENST00000379104		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000503622	ENST00000379100		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-intron	ENST00000495388	ENST00000471826		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000495388	ENST00000401867		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000495388	ENST00000379086		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000495388	ENST00000166534		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000495388	ENST00000360568		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000495388	ENST00000379104		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
intron-5UTR	ENST00000495388	ENST00000379100		TCGA	RV	BRCA	TCGA-E9-A247-01A	CTNND2	chr5	11903929	-	P4HA2	chr5	131554337	-
In-frame	ENST00000358077	ENST00000263269		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DAPK1	chr9	90296541	+	GRIN2D	chr19	48922842	+
In-frame	ENST00000472284	ENST00000263269		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DAPK1	chr9	90296541	+	GRIN2D	chr19	48922842	+
In-frame	ENST00000469640	ENST00000263269		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DAPK1	chr9	90296541	+	GRIN2D	chr19	48922842	+
In-frame	ENST00000408954	ENST00000263269		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DAPK1	chr9	90296541	+	GRIN2D	chr19	48922842	+
In-frame	ENST00000491893	ENST00000263269		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DAPK1	chr9	90296541	+	GRIN2D	chr19	48922842	+
intron-3CDS	ENST00000466188	ENST00000263269		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DAPK1	chr9	90296541	+	GRIN2D	chr19	48922842	+
Frame-shit	ENST00000367843	ENST00000359523		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000367843	ENST00000392121		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000367843	ENST00000474859		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367843	ENST00000403379		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000432587	ENST00000359523		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000432587	ENST00000392121		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000432587	ENST00000474859		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000432587	ENST00000403379		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000312263	ENST00000359523		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000312263	ENST00000392121		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000312263	ENST00000474859		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000312263	ENST00000403379		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000367840	ENST00000359523		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000367840	ENST00000392121		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
Frame-shit	ENST00000367840	ENST00000474859		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367840	ENST00000403379		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
3UTR-3CDS	ENST00000470919	ENST00000359523		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
3UTR-3CDS	ENST00000470919	ENST00000392121		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
3UTR-3CDS	ENST00000470919	ENST00000474859		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
3UTR-intron	ENST00000470919	ENST00000403379		TCGA	RV	BRCA	TCGA-C8-A137-01A	DCAF6	chr1	167921099	+	MPZL1	chr1	167734820	+
In-frame	ENST00000349699	ENST00000538566		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	DDX52	chr17	36002139	-	TMIGD1	chr17	28656547	-
In-frame	ENST00000349699	ENST00000328886		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	DDX52	chr17	36002139	-	TMIGD1	chr17	28656547	-
5UTR-3CDS	ENST00000394367	ENST00000538566		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	DDX52	chr17	36002139	-	TMIGD1	chr17	28656547	-
5UTR-3CDS	ENST00000394367	ENST00000328886		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	DDX52	chr17	36002139	-	TMIGD1	chr17	28656547	-
5UTR-3CDS	ENST00000393276	ENST00000520113		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393276	ENST00000369538		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393276	ENST00000353928		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393274	ENST00000520113		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393274	ENST00000369538		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393274	ENST00000353928		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393277	ENST00000520113		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393277	ENST00000369538		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
5UTR-3CDS	ENST00000393277	ENST00000353928		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
intron-3CDS	ENST00000481894	ENST00000520113		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
intron-3CDS	ENST00000481894	ENST00000369538		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
intron-3CDS	ENST00000481894	ENST00000353928		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	DENND2C	chr1	115212604	-	AMPD1	chr1	115218624	-
intron-3CDS	ENST00000306833	ENST00000264883		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000306833	ENST00000342467		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000306833	ENST00000514987		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000306833	ENST00000458189		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-intron	ENST00000306833	ENST00000515460		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000389082	ENST00000264883		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000389082	ENST00000342467		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000389082	ENST00000514987		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000389082	ENST00000458189		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5CDS-intron	ENST00000389082	ENST00000515460		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000536562	ENST00000264883		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000536562	ENST00000342467		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000536562	ENST00000514987		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000536562	ENST00000458189		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-intron	ENST00000536562	ENST00000515460		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000354285	ENST00000264883		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000354285	ENST00000342467		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000354285	ENST00000514987		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
In-frame	ENST00000354285	ENST00000458189		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5CDS-intron	ENST00000354285	ENST00000515460		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5UTR-3CDS	ENST00000545147	ENST00000264883		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5UTR-3CDS	ENST00000545147	ENST00000342467		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5UTR-3CDS	ENST00000545147	ENST00000514987		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5UTR-3CDS	ENST00000545147	ENST00000458189		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
5UTR-intron	ENST00000545147	ENST00000515460		TCGA	RV	BRCA	TCGA-AO-A12D-01A	DENND5B	chr12	31743640	-	NUP54	chr4	77039347	-
intron-3CDS	ENST00000540693	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000540693	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000337343	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
5CDS-intron	ENST00000337343	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000379274	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
5CDS-intron	ENST00000379274	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-3CDS	ENST00000261491	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000261491	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000536612	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
5CDS-intron	ENST00000536612	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-3CDS	ENST00000498255	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000498255	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-3CDS	ENST00000538674	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000538674	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000220496	ENST00000361937		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNAJC17	chr15	41099567	-	INO80	chr15	41277624	-
Frame-shit	ENST00000220496	ENST00000401393		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNAJC17	chr15	41099567	-	INO80	chr15	41277624	-
5CDS-5UTR	ENST00000220496	ENST00000561244		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNAJC17	chr15	41099567	-	INO80	chr15	41277624	-
intron-3CDS	ENST00000558727	ENST00000361937		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNAJC17	chr15	41099567	-	INO80	chr15	41277624	-
intron-3CDS	ENST00000558727	ENST00000401393		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNAJC17	chr15	41099567	-	INO80	chr15	41277624	-
intron-5UTR	ENST00000558727	ENST00000561244		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNAJC17	chr15	41099567	-	INO80	chr15	41277624	-
Frame-shit	ENST00000602402	ENST00000377047		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	DNAJC3	chr13	96329591	+	GPC6	chr13	94679983	+
Frame-shit	ENST00000376795	ENST00000377047		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	DNAJC3	chr13	96329591	+	GPC6	chr13	94679983	+
In-frame	ENST00000283365	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000283365	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000283365	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000283365	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000596745	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000596745	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000596745	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000596745	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000315456	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000315456	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000315456	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000315456	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000598334	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598334	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598334	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598334	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000554864	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000554864	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000554864	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000554864	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000399121	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000399121	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000399121	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000399121	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000595022	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000595022	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000595022	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000595022	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000269190	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000269190	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000269190	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000269190	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5UTR-3CDS	ENST00000399097	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5UTR-5UTR	ENST00000399097	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5UTR-5UTR	ENST00000399097	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5UTR-5UTR	ENST00000399097	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000598774	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598774	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598774	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598774	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000598142	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598142	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598142	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000598142	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000348997	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000348997	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000348997	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000348997	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000597599	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000597599	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000597599	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000597599	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000269191	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000269191	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000269191	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000269191	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000444659	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000444659	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000444659	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000444659	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
In-frame	ENST00000399113	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000399113	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000399113	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-5UTR	ENST00000399113	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000601125	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000601125	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000601125	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000601125	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000269192	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000269192	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000269192	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000269192	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000591182	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000591182	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000591182	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000591182	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000597674	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000597674	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000597674	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000597674	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000556414	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000556414	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000556414	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000556414	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000599844	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000599844	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000599844	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000599844	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000590831	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000590831	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000590831	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000590831	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-3CDS	ENST00000592449	ENST00000361524		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000592449	ENST00000584787		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000592449	ENST00000538137		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
intron-5UTR	ENST00000592449	ENST00000579111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	DTNA	chr18	32346005	+	ZNF521	chr18	22902151	-
5CDS-intron	ENST00000344537	ENST00000449981		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000344537	ENST00000359357		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000344537	ENST00000441566		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000355917	ENST00000449981		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000355917	ENST00000359357		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000355917	ENST00000441566		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000338950	ENST00000449981		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000338950	ENST00000359357		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
5CDS-intron	ENST00000338950	ENST00000441566		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
intron-intron	ENST00000462989	ENST00000449981		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
intron-intron	ENST00000462989	ENST00000359357		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
intron-intron	ENST00000462989	ENST00000441566		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	DTNBP1	chr6	15615498	-	DNAH8	chr6	38979991	+
Frame-shit	ENST00000375735	ENST00000342056		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000355194		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000370398		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000370392		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000355635		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000414165		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000402622		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000375735	ENST00000403813		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000342056		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000355194		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000370398		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000370392		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000355635		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000414165		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000402622		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000334267	ENST00000403813		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000342056		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000355194		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000370398		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000370392		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000355635		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000414165		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000402622		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000398093	ENST00000403813		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	DYNC2H1	chr11	103339433	+	KCNQ5	chr6	73787045	+
Frame-shit	ENST00000361156	ENST00000376279		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000361156	ENST00000376286		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000361156	ENST00000376285		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5CDS-intron	ENST00000361156	ENST00000485946		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000347108	ENST00000376279		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000347108	ENST00000376286		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000347108	ENST00000376285		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5CDS-intron	ENST00000347108	ENST00000485946		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000361396	ENST00000376279		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000361396	ENST00000376286		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000361396	ENST00000376285		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5CDS-intron	ENST00000361396	ENST00000485946		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000376829	ENST00000376279		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000376829	ENST00000376286		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
Frame-shit	ENST00000376829	ENST00000376285		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5CDS-intron	ENST00000376829	ENST00000485946		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5UTR-3CDS	ENST00000466027	ENST00000376279		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5UTR-3CDS	ENST00000466027	ENST00000376286		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5UTR-3CDS	ENST00000466027	ENST00000376285		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
5UTR-intron	ENST00000466027	ENST00000485946		TCGA	RV	BRCA	TCGA-B6-A400-01A	DZIP1	chr13	96293549	-	PCCA	chr13	100982815	+
In-frame	ENST00000231887	ENST00000334444		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
In-frame	ENST00000231887	ENST00000265586		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-5UTR	ENST00000231887	ENST00000492216		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000231887	ENST00000427120		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000231887	ENST00000392579		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000231887	ENST00000382494		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000231887	ENST00000446941		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
Frame-shit	ENST00000456310	ENST00000334444		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
Frame-shit	ENST00000456310	ENST00000265586		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-5UTR	ENST00000456310	ENST00000492216		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000456310	ENST00000427120		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000456310	ENST00000392579		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000456310	ENST00000382494		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
5CDS-intron	ENST00000456310	ENST00000446941		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-3CDS	ENST00000475987	ENST00000334444		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-3CDS	ENST00000475987	ENST00000265586		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-5UTR	ENST00000475987	ENST00000492216		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000475987	ENST00000427120		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000475987	ENST00000392579		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000475987	ENST00000382494		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000475987	ENST00000446941		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-3CDS	ENST00000440662	ENST00000334444		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-3CDS	ENST00000440662	ENST00000265586		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-5UTR	ENST00000440662	ENST00000492216		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000440662	ENST00000427120		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000440662	ENST00000392579		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000440662	ENST00000382494		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000440662	ENST00000446941		TCGA	RV	BRCA	TCGA-D8-A27N-01A	EHHADH	chr3	184922204	-	ABCC5	chr3	183696439	-
intron-intron	ENST00000445912	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000445912	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000445912	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000445912	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000445912	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000445912	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000445912	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000252034	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000358929	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000320492	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000414324	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000380562	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380575	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000380584	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000458204	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000357036	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000429192	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380553	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000380576	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000320399	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000257261		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000522056		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000278840		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000521849		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000574708		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000522639		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
intron-intron	ENST00000466878	ENST00000517839		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	ELN	chr7	73484007	+	FADS2	chr11	61588853	+
5CDS-5UTR	ENST00000258484	ENST00000407073		TCGA	RV	BRCA	TCGA-A8-A08F-01A	EPC2	chr2	149528956	+	MBD5	chr2	149215772	+
5CDS-3UTR	ENST00000258484	ENST00000478804		TCGA	RV	BRCA	TCGA-A8-A08F-01A	EPC2	chr2	149528956	+	MBD5	chr2	149215772	+
5CDS-intron	ENST00000258484	ENST00000404807		TCGA	RV	BRCA	TCGA-A8-A08F-01A	EPC2	chr2	149528956	+	MBD5	chr2	149215772	+
intron-5UTR	ENST00000409654	ENST00000407073		TCGA	RV	BRCA	TCGA-A8-A08F-01A	EPC2	chr2	149528956	+	MBD5	chr2	149215772	+
intron-3UTR	ENST00000409654	ENST00000478804		TCGA	RV	BRCA	TCGA-A8-A08F-01A	EPC2	chr2	149528956	+	MBD5	chr2	149215772	+
intron-intron	ENST00000409654	ENST00000404807		TCGA	RV	BRCA	TCGA-A8-A08F-01A	EPC2	chr2	149528956	+	MBD5	chr2	149215772	+
Frame-shit	ENST00000361525	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000361525	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000366940	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000366940	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
In-frame	ENST00000361395	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000361395	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000366938	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000366938	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000359162	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000359162	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000493603	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000493603	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000463665	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000463665	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000487276	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000487276	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
In-frame	ENST00000493748	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000493748	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
intron-3CDS	ENST00000471371	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
intron-intron	ENST00000471371	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000391890	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000391890	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000366937	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000366937	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
In-frame	ENST00000408911	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000408911	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
Frame-shit	ENST00000360012	ENST00000366812		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
5CDS-intron	ENST00000360012	ENST00000464927		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ESRRG	chr1	216850418	-	ACBD3	chr1	226353701	-
In-frame	ENST00000264956	ENST00000407559		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	EVC	chr4	5721100	+	WDR60	chr7	158694430	+
In-frame	ENST00000382674	ENST00000407559		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	EVC	chr4	5721100	+	WDR60	chr7	158694430	+
In-frame	ENST00000509451	ENST00000407559		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	EVC	chr4	5721100	+	WDR60	chr7	158694430	+
intron-3CDS	ENST00000515113	ENST00000407559		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	EVC	chr4	5721100	+	WDR60	chr7	158694430	+
3UTR-3CDS	ENST00000437428	ENST00000263408		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAM157A	chr3	197894742	+	C9	chr5	39316131	-
3UTR-5UTR	ENST00000437428	ENST00000509186		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAM157A	chr3	197894742	+	C9	chr5	39316131	-
In-frame	ENST00000397609	ENST00000310803		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
In-frame	ENST00000397609	ENST00000539159		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
In-frame	ENST00000397609	ENST00000561180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
In-frame	ENST00000397609	ENST00000450598		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
In-frame	ENST00000397609	ENST00000558164		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
In-frame	ENST00000397609	ENST00000559830		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000491535	ENST00000310803		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000491535	ENST00000539159		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000491535	ENST00000561180		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000491535	ENST00000450598		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000491535	ENST00000558164		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000491535	ENST00000559830		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	FAM98B	chr15	38773660	+	RASGRP1	chr15	38798121	-
Frame-shit	ENST00000311172	ENST00000522455		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000311172	ENST00000521695		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000311172	ENST00000521268		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000311172	ENST00000518566		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000311172	ENST00000517638		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000311172	ENST00000523850		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000311172	ENST00000521376		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409314	ENST00000522455		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409314	ENST00000521695		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409314	ENST00000521268		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409314	ENST00000518566		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409314	ENST00000517638		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409314	ENST00000523850		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409314	ENST00000521376		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409418	ENST00000522455		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409418	ENST00000521695		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409418	ENST00000521268		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409418	ENST00000518566		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409418	ENST00000517638		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000409418	ENST00000523850		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409418	ENST00000521376		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000458644	ENST00000522455		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000458644	ENST00000521695		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000458644	ENST00000521268		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000458644	ENST00000518566		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000458644	ENST00000517638		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
In-frame	ENST00000458644	ENST00000523850		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000458644	ENST00000521376		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000522455		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000521695		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000521268		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000518566		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000517638		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000523850		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
Frame-shit	ENST00000409853	ENST00000521376		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000522455		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000521695		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000521268		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000518566		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000517638		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000523850		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
intron-3CDS	ENST00000409263	ENST00000521376		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FCHSD2	chr11	72695133	-	RALYL	chr8	85833129	+
3UTR-3CDS	ENST00000474476	ENST00000374168		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
3UTR-3CDS	ENST00000474476	ENST00000374166		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
3UTR-5UTR	ENST00000474476	ENST00000526792		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
3UTR-5UTR	ENST00000474476	ENST00000374162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
3UTR-intron	ENST00000474476	ENST00000530003		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
3UTR-intron	ENST00000474476	ENST00000531382		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
3UTR-intron	ENST00000474476	ENST00000488985		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
Frame-shit	ENST00000371218	ENST00000374168		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
Frame-shit	ENST00000371218	ENST00000374166		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000371218	ENST00000526792		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000371218	ENST00000374162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000371218	ENST00000530003		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000371218	ENST00000531382		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000371218	ENST00000488985		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
Frame-shit	ENST00000303721	ENST00000374168		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
Frame-shit	ENST00000303721	ENST00000374166		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000303721	ENST00000526792		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000303721	ENST00000374162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000303721	ENST00000530003		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000303721	ENST00000531382		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000303721	ENST00000488985		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
Frame-shit	ENST00000371212	ENST00000374168		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
Frame-shit	ENST00000371212	ENST00000374166		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000371212	ENST00000526792		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000371212	ENST00000374162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000371212	ENST00000530003		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000371212	ENST00000531382		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-intron	ENST00000371212	ENST00000488985		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-3CDS	ENST00000371210	ENST00000374168		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-3CDS	ENST00000371210	ENST00000374166		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-5UTR	ENST00000371210	ENST00000526792		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-5UTR	ENST00000371210	ENST00000374162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-intron	ENST00000371210	ENST00000530003		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-intron	ENST00000371210	ENST00000531382		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
intron-intron	ENST00000371210	ENST00000488985		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FGGY	chr1	59978111	+	RPS6KA1	chr1	26863416	+
5CDS-5UTR	ENST00000343882	ENST00000423902		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-intron	ENST00000343882	ENST00000524602		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-intron	ENST00000343882	ENST00000525508		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-intron	ENST00000343882	ENST00000529472		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-5UTR	ENST00000406360	ENST00000423902		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-intron	ENST00000406360	ENST00000524602		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-intron	ENST00000406360	ENST00000525508		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5CDS-intron	ENST00000406360	ENST00000529472		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
intron-5UTR	ENST00000540898	ENST00000423902		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
intron-intron	ENST00000540898	ENST00000524602		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
intron-intron	ENST00000540898	ENST00000525508		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
intron-intron	ENST00000540898	ENST00000529472		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	FOXO3	chr6	108883032	+	CHD7	chr8	61653818	+
5UTR-3CDS	ENST00000394123	ENST00000274576		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000394123	ENST00000455880		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000394123	ENST00000545569		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-intron	ENST00000394123	ENST00000471351		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000543466	ENST00000274576		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000543466	ENST00000455880		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000543466	ENST00000545569		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-intron	ENST00000543466	ENST00000471351		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000356245	ENST00000274576		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000356245	ENST00000455880		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-3CDS	ENST00000356245	ENST00000545569		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
5UTR-intron	ENST00000356245	ENST00000471351		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	G3BP1	chr5	151151597	+	GLRA1	chr5	151208628	-
intron-3CDS	ENST00000340149	ENST00000315392		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
intron-intron	ENST00000340149	ENST00000493200		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
intron-5UTR	ENST00000340149	ENST00000539608		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
intron-intron	ENST00000340149	ENST00000444911		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
intron-intron	ENST00000340149	ENST00000394316		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
Frame-shit	ENST00000361507	ENST00000315392		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000361507	ENST00000493200		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5CDS-5UTR	ENST00000361507	ENST00000539608		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000361507	ENST00000444911		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000361507	ENST00000394316		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5UTR-3CDS	ENST00000526030	ENST00000315392		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5UTR-intron	ENST00000526030	ENST00000493200		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5UTR-5UTR	ENST00000526030	ENST00000539608		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5UTR-intron	ENST00000526030	ENST00000444911		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5UTR-intron	ENST00000526030	ENST00000394316		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	PLXDC1	chr17	37296085	-
5UTR-5UTR	ENST00000261858	ENST00000448182		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
5UTR-5UTR	ENST00000261858	ENST00000260364		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
5UTR-intron	ENST00000261858	ENST00000455873		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
5UTR-intron	ENST00000261858	ENST00000388866		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
5UTR-intron	ENST00000261858	ENST00000530406		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
5UTR-intron	ENST00000261858	ENST00000525163		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-5UTR	ENST00000559420	ENST00000448182		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-5UTR	ENST00000559420	ENST00000260364		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559420	ENST00000455873		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559420	ENST00000388866		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559420	ENST00000530406		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559420	ENST00000525163		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-5UTR	ENST00000559500	ENST00000448182		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-5UTR	ENST00000559500	ENST00000260364		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559500	ENST00000455873		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559500	ENST00000388866		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559500	ENST00000530406		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
intron-intron	ENST00000559500	ENST00000525163		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	NOX5	chr15	69267068	+
Frame-shit	ENST00000340645	ENST00000310864		TCGA	RV	BRCA	TCGA-OL-A66P-01A	GOLGB1	chr3	121400534	-	IQCB1	chr3	121509062	-
Frame-shit	ENST00000340645	ENST00000349820		TCGA	RV	BRCA	TCGA-OL-A66P-01A	GOLGB1	chr3	121400534	-	IQCB1	chr3	121509062	-
Frame-shit	ENST00000393667	ENST00000310864		TCGA	RV	BRCA	TCGA-OL-A66P-01A	GOLGB1	chr3	121400534	-	IQCB1	chr3	121509062	-
Frame-shit	ENST00000393667	ENST00000349820		TCGA	RV	BRCA	TCGA-OL-A66P-01A	GOLGB1	chr3	121400534	-	IQCB1	chr3	121509062	-
intron-3CDS	ENST00000472829	ENST00000310864		TCGA	RV	BRCA	TCGA-OL-A66P-01A	GOLGB1	chr3	121400534	-	IQCB1	chr3	121509062	-
intron-3CDS	ENST00000472829	ENST00000349820		TCGA	RV	BRCA	TCGA-OL-A66P-01A	GOLGB1	chr3	121400534	-	IQCB1	chr3	121509062	-
In-frame	ENST00000527524	ENST00000534111		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000527524	ENST00000522307		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000527524	ENST00000523251		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000527524	ENST00000437212		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000527524	ENST00000522824		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-intron	ENST00000527524	ENST00000518413		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
In-frame	ENST00000438375	ENST00000534111		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000438375	ENST00000522307		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000438375	ENST00000523251		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000438375	ENST00000437212		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-5UTR	ENST00000438375	ENST00000522824		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
5CDS-intron	ENST00000438375	ENST00000518413		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
intron-3CDS	ENST00000527130	ENST00000534111		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
intron-5UTR	ENST00000527130	ENST00000522307		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
intron-5UTR	ENST00000527130	ENST00000523251		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
intron-5UTR	ENST00000527130	ENST00000437212		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
intron-5UTR	ENST00000527130	ENST00000522824		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
intron-intron	ENST00000527130	ENST00000518413		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	GRIK4	chr11	120776202	+	TMPRSS4	chr11	117965537	+
Frame-shit	ENST00000262903	ENST00000348697		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000262903	ENST00000402984		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000262903	ENST00000262722		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000262903	ENST00000327858		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000262903	ENST00000442170		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000262903	ENST00000340923		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
5CDS-intron	ENST00000262903	ENST00000476366		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000369125	ENST00000348697		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000369125	ENST00000402984		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000369125	ENST00000262722		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000369125	ENST00000327858		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000369125	ENST00000442170		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
Frame-shit	ENST00000369125	ENST00000340923		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
5CDS-intron	ENST00000369125	ENST00000476366		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000517995	ENST00000348697		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000517995	ENST00000402984		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000517995	ENST00000262722		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000517995	ENST00000327858		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000517995	ENST00000442170		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-3CDS	ENST00000517995	ENST00000340923		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-intron	ENST00000517995	ENST00000476366		TCGA	RV	BRCA	TCGA-E2-A109-01A	HACE1	chr6	105280917	-	FBLN1	chr22	45914562	+
intron-5UTR	ENST00000473144	ENST00000540964		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	HHIPL2	chr1	222700311	-	TLR5	chr1	223310605	-
intron-intron	ENST00000473144	ENST00000342210		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	HHIPL2	chr1	222700311	-	TLR5	chr1	223310605	-
intron-5UTR	ENST00000473144	ENST00000484766		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	HHIPL2	chr1	222700311	-	TLR5	chr1	223310605	-
5CDS-5UTR	ENST00000343410	ENST00000540964		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	HHIPL2	chr1	222700311	-	TLR5	chr1	223310605	-
5CDS-intron	ENST00000343410	ENST00000342210		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	HHIPL2	chr1	222700311	-	TLR5	chr1	223310605	-
5CDS-5UTR	ENST00000343410	ENST00000484766		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	HHIPL2	chr1	222700311	-	TLR5	chr1	223310605	-
intron-3CDS	ENST00000412585	ENST00000520539		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000412585	ENST00000220959		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000412585	ENST00000518205		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000412585	ENST00000521922		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000412585	ENST00000519528		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000425848	ENST00000520539		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000425848	ENST00000220959		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000425848	ENST00000518205		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000425848	ENST00000521922		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000425848	ENST00000519528		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000450871	ENST00000520539		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000450871	ENST00000220959		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000450871	ENST00000518205		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000450871	ENST00000521922		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000450871	ENST00000519528		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000359635	ENST00000520539		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000359635	ENST00000220959		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000359635	ENST00000518205		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000359635	ENST00000521922		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000359635	ENST00000519528		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000435618	ENST00000520539		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000435618	ENST00000220959		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000435618	ENST00000518205		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000435618	ENST00000521922		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000435618	ENST00000519528		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000421349	ENST00000520539		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-3CDS	ENST00000421349	ENST00000220959		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000421349	ENST00000518205		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000421349	ENST00000521922		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
intron-intron	ENST00000421349	ENST00000519528		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HLA-B	chr6	31321759	-	UBR5	chr8	103354894	-
Frame-shit	ENST00000433700	ENST00000524419		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000433700	ENST00000528989		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000433700	ENST00000315571		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000433700	ENST00000529759		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000443698	ENST00000524419		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000443698	ENST00000528989		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000443698	ENST00000315571		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000443698	ENST00000529759		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000380062	ENST00000524419		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000380062	ENST00000528989		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000380062	ENST00000315571		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000380062	ENST00000529759		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000429045	ENST00000524419		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000429045	ENST00000528989		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000429045	ENST00000315571		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000429045	ENST00000529759		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	IFT74	chr9	26962085	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000233813	ENST00000292174		TCGA	RV	BRCA	TCGA-A8-A079-01A	IGFBP5	chr2	217536828	-	CXCR5	chr11	118754475	+
Frame-shit	ENST00000255078	ENST00000297001		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	IGHMBP2	chr11	68685351	+	C7orf72	chr7	50179736	+
intron-3CDS	ENST00000539224	ENST00000297001		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	IGHMBP2	chr11	68685351	+	C7orf72	chr7	50179736	+
intron-3CDS	ENST00000541229	ENST00000297001		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	IGHMBP2	chr11	68685351	+	C7orf72	chr7	50179736	+
Frame-shit	ENST00000264257	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000264257	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000264257	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
5CDS-intron	ENST00000264257	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000441515	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000441515	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000441515	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
5CDS-intron	ENST00000441515	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
3UTR-3CDS	ENST00000481806	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
3UTR-3CDS	ENST00000481806	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
3UTR-3CDS	ENST00000481806	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
3UTR-intron	ENST00000481806	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000539491	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000539491	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000539491	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
5CDS-intron	ENST00000539491	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	IL1RL2	chr2	102828634	+	IL1R2	chr2	102636100	+
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	BRCA	TCGA-AQ-A1H3-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	BRCA	TCGA-AQ-A1H3-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
5CDS-5UTR	ENST00000444766	ENST00000259006		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000444766	ENST00000578402		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000444766	ENST00000583211		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000444766	ENST00000578061		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000444766	ENST00000578993		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-intron	ENST00000444766	ENST00000582055		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000251334	ENST00000259006		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000251334	ENST00000578402		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000251334	ENST00000583211		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000251334	ENST00000578061		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-5UTR	ENST00000251334	ENST00000578993		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
5CDS-intron	ENST00000251334	ENST00000582055		TCGA	RV	BRCA	TCGA-D8-A27G-01A	INTS2	chr17	59974830	-	LIMD2	chr17	61776708	-
Frame-shit	ENST00000274364	ENST00000307624		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
5CDS-5UTR	ENST00000274364	ENST00000508234		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
5CDS-intron	ENST00000274364	ENST00000513751		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
5UTR-3CDS	ENST00000379730	ENST00000307624		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
5UTR-5UTR	ENST00000379730	ENST00000508234		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
5UTR-intron	ENST00000379730	ENST00000513751		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-3CDS	ENST00000396234	ENST00000307624		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-5UTR	ENST00000396234	ENST00000508234		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-intron	ENST00000396234	ENST00000513751		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-3CDS	ENST00000502745	ENST00000307624		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-5UTR	ENST00000502745	ENST00000508234		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-intron	ENST00000502745	ENST00000513751		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-3CDS	ENST00000508410	ENST00000307624		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-5UTR	ENST00000508410	ENST00000508234		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
intron-intron	ENST00000508410	ENST00000513751		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	IQGAP2	chr5	75866482	+	ACOT12	chr5	80626759	-
Frame-shit	ENST00000423113	ENST00000442713		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
Frame-shit	ENST00000423113	ENST00000269445		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000423113	ENST00000584977		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000423113	ENST00000578396		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
In-frame	ENST00000396033	ENST00000442713		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
In-frame	ENST00000396033	ENST00000269445		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000396033	ENST00000584977		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000396033	ENST00000578396		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
Frame-shit	ENST00000302278	ENST00000442713		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
Frame-shit	ENST00000302278	ENST00000269445		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000302278	ENST00000584977		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000302278	ENST00000578396		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
Frame-shit	ENST00000374956	ENST00000442713		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
Frame-shit	ENST00000374956	ENST00000269445		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000374956	ENST00000584977		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
5CDS-intron	ENST00000374956	ENST00000578396		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
intron-3CDS	ENST00000484088	ENST00000442713		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
intron-3CDS	ENST00000484088	ENST00000269445		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
intron-intron	ENST00000484088	ENST00000584977		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
intron-intron	ENST00000484088	ENST00000578396		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ITGB1	chr10	33214799	-	DYM	chr18	46798673	-
Frame-shit	ENST00000335647	ENST00000543571		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
Frame-shit	ENST00000335647	ENST00000253339		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000335647	ENST00000542747		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000335647	ENST00000392273		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
In-frame	ENST00000335643	ENST00000543571		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
In-frame	ENST00000335643	ENST00000253339		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000335643	ENST00000542747		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000335643	ENST00000392273		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
In-frame	ENST00000367411	ENST00000543571		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
In-frame	ENST00000367411	ENST00000253339		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000367411	ENST00000542747		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000367411	ENST00000392273		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5UTR-3CDS	ENST00000494504	ENST00000543571		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5UTR-3CDS	ENST00000494504	ENST00000253339		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5UTR-5UTR	ENST00000494504	ENST00000542747		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5UTR-5UTR	ENST00000494504	ENST00000392273		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KATNA1	chr6	149944239	-	LATS1	chr6	150005728	-
5CDS-5UTR	ENST00000338205	ENST00000427277		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
5CDS-5UTR	ENST00000338205	ENST00000297954		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
5CDS-5UTR	ENST00000338205	ENST00000395475		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
5CDS-5UTR	ENST00000338205	ENST00000356055		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
5CDS-5UTR	ENST00000338205	ENST00000349097		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
5CDS-5UTR	ENST00000338205	ENST00000395477		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
5CDS-intron	ENST00000338205	ENST00000471076		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000259335	ENST00000427277		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000259335	ENST00000297954		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000259335	ENST00000395475		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000259335	ENST00000356055		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000259335	ENST00000349097		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000259335	ENST00000395477		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-intron	ENST00000259335	ENST00000471076		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000374378	ENST00000427277		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000374378	ENST00000297954		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000374378	ENST00000395475		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000374378	ENST00000356055		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000374378	ENST00000349097		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000374378	ENST00000395477		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-intron	ENST00000374378	ENST00000471076		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000465499	ENST00000427277		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000465499	ENST00000297954		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000465499	ENST00000395475		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000465499	ENST00000356055		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000465499	ENST00000349097		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-5UTR	ENST00000465499	ENST00000395477		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
intron-intron	ENST00000465499	ENST00000471076		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	KIAA0368	chr9	114246396	-	WNK2	chr9	95991978	+
In-frame	ENST00000261588	ENST00000305202		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	KIAA0556	chr16	27585277	+	NECAB2	chr16	84005756	+
5CDS-5UTR	ENST00000261588	ENST00000565691		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	KIAA0556	chr16	27585277	+	NECAB2	chr16	84005756	+
5CDS-intron	ENST00000261588	ENST00000567703		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	KIAA0556	chr16	27585277	+	NECAB2	chr16	84005756	+
intron-3CDS	ENST00000567894	ENST00000305202		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	KIAA0556	chr16	27585277	+	NECAB2	chr16	84005756	+
intron-5UTR	ENST00000567894	ENST00000565691		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	KIAA0556	chr16	27585277	+	NECAB2	chr16	84005756	+
intron-intron	ENST00000567894	ENST00000567703		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	KIAA0556	chr16	27585277	+	NECAB2	chr16	84005756	+
intron-3CDS	ENST00000376462	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376462	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000481700	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000458595	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376454	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376452	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
Frame-shit	ENST00000430453	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000307544	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396446	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000396445	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000536985		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000379789		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000540253		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000317350		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000379785		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000379782		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000360521		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000376451	ENST00000379775		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	KIAA1217	chr10	24544525	+	PFKFB3	chr10	6255586	+
5CDS-3UTR	ENST00000509603	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000509603	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000319524	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000319524	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000268763	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000268763	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000398988	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000398988	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000581975	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000581975	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000582410	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000582410	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000578981	ENST00000583215		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
intron-3UTR	ENST00000578981	ENST00000323372		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	KSR1	chr17	25783900	+	PIPOX	chr17	27371877	+
In-frame	ENST00000370577	ENST00000503581		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
In-frame	ENST00000370577	ENST00000370621		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
In-frame	ENST00000370577	ENST00000370616		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370577	ENST00000393380		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370577	ENST00000342421		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370577	ENST00000370618		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370577	ENST00000486069		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
In-frame	ENST00000370570	ENST00000503581		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
In-frame	ENST00000370570	ENST00000370621		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
In-frame	ENST00000370570	ENST00000370616		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370570	ENST00000393380		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370570	ENST00000342421		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370570	ENST00000370618		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000370570	ENST00000486069		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	LMBRD1	chr6	70490386	-	EYS	chr6	65767620	-
5UTR-intron	ENST00000300417	ENST00000473039		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000300417	ENST00000373624		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000300417	ENST00000542603		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000300417	ENST00000394219		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000300417	ENST00000373620		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000300417	ENST00000394215		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000300417	ENST00000373618		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000473039		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000373624		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000542603		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000394219		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000373620		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000394215		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000373324	ENST00000373618		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000473039		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000373624		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000542603		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000394219		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000373620		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000394215		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000323301	ENST00000373618		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000473039		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000373624		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000542603		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000394219		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000373620		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000394215		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000373322	ENST00000373618		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000473039		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000373624		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000542603		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000394219		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000373620		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000394215		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000483302	ENST00000373618		TCGA	RV	BRCA	TCGA-E2-A159-01A	LRSAM1	chr9	130214363	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000231751	ENST00000556679		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000456570		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000477310		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000425368		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000497841		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000417261		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000427888		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000459734		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000455591		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000433503		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000474621		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000424727		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000436692		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000473139		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000399981		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000419920		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000465211		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000375455		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000489605		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000426239		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000419411		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000460958		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000556679		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000456570		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000477310		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000425368		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000497841		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000417261		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000427888		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000459734		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000455591		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000433503		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000474621		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000424727		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000436692		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000473139		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000399981		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000419920		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000465211		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000375455		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000489605		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000426239		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000419411		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000460958		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000556679		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000456570		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000477310		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000425368		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000497841		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000417261		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000427888		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000459734		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000455591		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000433503		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000474621		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000424727		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000436692		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000473139		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000399981		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000419920		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000465211		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000375455		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000489605		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000426239		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000419411		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000460958		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000556679		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000456570		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000477310		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000425368		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000497841		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000417261		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000427888		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000459734		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000455591		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000433503		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000474621		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000424727		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000436692		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000473139		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000399981		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000419920		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000465211		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000375455		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000489605		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000426239		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000419411		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000460958		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-3CDS	ENST00000454181	ENST00000341459		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-intron	ENST00000454181	ENST00000482911		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-intron	ENST00000454181	ENST00000449382		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-3CDS	ENST00000558126	ENST00000341459		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-intron	ENST00000558126	ENST00000482911		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-intron	ENST00000558126	ENST00000449382		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
Frame-shit	ENST00000267838	ENST00000341459		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
5CDS-intron	ENST00000267838	ENST00000482911		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
5CDS-intron	ENST00000267838	ENST00000449382		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-3CDS	ENST00000560491	ENST00000341459		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-intron	ENST00000560491	ENST00000482911		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
intron-intron	ENST00000560491	ENST00000449382		TCGA	RV	BRCA	TCGA-AN-A049-01A	LYSMD2	chr15	52029547	-	SLC24A5	chr15	48426455	+
In-frame	ENST00000545844	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000545844	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000545844	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000567887	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000567887	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000567887	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000372915	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000372915	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000372915	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000361689	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000361689	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000361689	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000539005	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000539005	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000539005	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000317713	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000317713	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000317713	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000564288	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000564288	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000564288	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000289893	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000289893	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-intron	ENST00000289893	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000536367	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
In-frame	ENST00000536367	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
5CDS-intron	ENST00000536367	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000484793	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000484793	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-intron	ENST00000484793	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000602421	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000602421	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-intron	ENST00000602421	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000476350	ENST00000373091		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-3CDS	ENST00000476350	ENST00000373093		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
intron-intron	ENST00000476350	ENST00000462621		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	MACF1	chr1	39696915	+	GRIK3	chr1	37307540	-
Frame-shit	ENST00000354489	ENST00000354666		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MAK	chr6	10784657	-	ELOVL2	chr6	10984139	-
Frame-shit	ENST00000313243	ENST00000354666		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MAK	chr6	10784657	-	ELOVL2	chr6	10984139	-
Frame-shit	ENST00000474039	ENST00000354666		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MAK	chr6	10784657	-	ELOVL2	chr6	10984139	-
3UTR-3CDS	ENST00000538030	ENST00000354666		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MAK	chr6	10784657	-	ELOVL2	chr6	10984139	-
intron-3CDS	ENST00000536370	ENST00000354666		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MAK	chr6	10784657	-	ELOVL2	chr6	10984139	-
Frame-shit	ENST00000377350	ENST00000562435		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566266	-	NETO2	chr16	47143622	-
Frame-shit	ENST00000377350	ENST00000303155		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566266	-	NETO2	chr16	47143622	-
Frame-shit	ENST00000294066	ENST00000562435		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566266	-	NETO2	chr16	47143622	-
Frame-shit	ENST00000294066	ENST00000303155		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566266	-	NETO2	chr16	47143622	-
intron-3CDS	ENST00000468062	ENST00000562435		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566266	-	NETO2	chr16	47143622	-
intron-3CDS	ENST00000468062	ENST00000303155		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566266	-	NETO2	chr16	47143622	-
5UTR-3CDS	ENST00000373791	ENST00000454872		TCGA	RV	BRCA	TCGA-AN-A049-01A	MECR	chr1	29557243	-	NAALADL2	chr3	175473008	+
5UTR-intron	ENST00000373791	ENST00000473253		TCGA	RV	BRCA	TCGA-AN-A049-01A	MECR	chr1	29557243	-	NAALADL2	chr3	175473008	+
Frame-shit	ENST00000263702	ENST00000454872		TCGA	RV	BRCA	TCGA-AN-A049-01A	MECR	chr1	29557243	-	NAALADL2	chr3	175473008	+
5CDS-intron	ENST00000263702	ENST00000473253		TCGA	RV	BRCA	TCGA-AN-A049-01A	MECR	chr1	29557243	-	NAALADL2	chr3	175473008	+
5UTR-3CDS	ENST00000489248	ENST00000454872		TCGA	RV	BRCA	TCGA-AN-A049-01A	MECR	chr1	29557243	-	NAALADL2	chr3	175473008	+
5UTR-intron	ENST00000489248	ENST00000473253		TCGA	RV	BRCA	TCGA-AN-A049-01A	MECR	chr1	29557243	-	NAALADL2	chr3	175473008	+
Frame-shit	ENST00000255764	ENST00000265594		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MED10	chr5	6374437	-	MCCC1	chr3	182812393	-
5CDS-5UTR	ENST00000255764	ENST00000492597		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MED10	chr5	6374437	-	MCCC1	chr3	182812393	-
5CDS-5UTR	ENST00000255764	ENST00000539926		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MED10	chr5	6374437	-	MCCC1	chr3	182812393	-
5CDS-intron	ENST00000255764	ENST00000489909		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MED10	chr5	6374437	-	MCCC1	chr3	182812393	-
5CDS-5UTR	ENST00000397786	ENST00000544892		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	MED13	chr17	60059559	-	ITGA3	chr17	48141441	+
5CDS-5UTR	ENST00000397786	ENST00000320031		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	MED13	chr17	60059559	-	ITGA3	chr17	48141441	+
5CDS-5UTR	ENST00000397786	ENST00000007722		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	MED13	chr17	60059559	-	ITGA3	chr17	48141441	+
intron-5UTR	ENST00000580896	ENST00000544892		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	MED13	chr17	60059559	-	ITGA3	chr17	48141441	+
intron-5UTR	ENST00000580896	ENST00000320031		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	MED13	chr17	60059559	-	ITGA3	chr17	48141441	+
intron-5UTR	ENST00000580896	ENST00000007722		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	MED13	chr17	60059559	-	ITGA3	chr17	48141441	+
Frame-shit	ENST00000323666	ENST00000436874		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000323666	ENST00000261219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000323666	ENST00000356859		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000546753	ENST00000436874		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000546753	ENST00000261219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000546753	ENST00000356859		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000261220	ENST00000436874		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000261220	ENST00000261219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000261220	ENST00000356859		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000550777	ENST00000436874		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000550777	ENST00000261219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000550777	ENST00000356859		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000551840	ENST00000436874		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000551840	ENST00000261219		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000551840	ENST00000356859		TCGA	RV	BRCA	TCGA-A7-A13D-01B	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000520777	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000520777	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000520777	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000360522	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000360522	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000360522	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000378710	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000378710	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000378710	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000357210	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000357210	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000357210	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000355826	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000355826	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000355826	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000518681	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000518681	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000518681	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000505820	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000505820	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
Frame-shit	ENST00000505820	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000378712	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000378712	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000378712	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000504599	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000504599	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000504599	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
intron-3CDS	ENST00000378708	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
intron-3CDS	ENST00000378708	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
intron-3CDS	ENST00000378708	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
intron-3CDS	ENST00000512004	ENST00000379410		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
intron-3CDS	ENST00000512004	ENST00000379407		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
intron-3CDS	ENST00000512004	ENST00000379409		TCGA	RV	BRCA	TCGA-A2-A0CR-01A	MIB2	chr1	1551994	+	PLEKHN1	chr1	908241	+
5UTR-3CDS	ENST00000317552	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000317552	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000317552	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000317552	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000317552	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000317552	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000317552	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-intron	ENST00000317552	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000453318	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000453318	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000453318	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000453318	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000453318	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000453318	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000453318	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000453318	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380779	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380779	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380779	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380779	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380779	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380779	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380779	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000380779	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380780	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380780	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380780	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380780	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380780	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380780	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380780	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000380780	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380785	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380785	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380785	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380785	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000380785	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000380785	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000380785	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-intron	ENST00000380785	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380787	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380787	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380787	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000380787	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380787	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380787	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000380787	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000380787	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380782	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380782	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380782	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-3CDS	ENST00000380782	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000380782	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000380782	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-5UTR	ENST00000380782	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
5UTR-intron	ENST00000380782	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000337414		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000380718		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000380732		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000534860		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479925	ENST00000380736		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479925	ENST00000303025		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479925	ENST00000413512		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000479925	ENST00000491514		TCGA	RV	BRCA	TCGA-A8-A094-01A	MID1	chrX	10588330	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000571589	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000571589	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000571589	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000574045	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000574045	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000574045	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000318282	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000318282	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
Frame-shit	ENST00000318282	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000572567	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000572567	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000572567	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000341243	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000341243	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000341243	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
3UTR-3CDS	ENST00000575537	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
3UTR-3CDS	ENST00000575537	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
3UTR-3CDS	ENST00000575537	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000573051	ENST00000348261		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000573051	ENST00000358590		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
intron-3CDS	ENST00000573051	ENST00000565831		TCGA	RV	BRCA	TCGA-E9-A22A-01A	MKL2	chr16	14234617	+	CACNA1H	chr16	1250256	+
In-frame	ENST00000380338	ENST00000376238		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000380338	ENST00000537648		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000380338	ENST00000495823		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5UTR-3CDS	ENST00000355930	ENST00000376238		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5UTR-5UTR	ENST00000355930	ENST00000537648		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5UTR-5UTR	ENST00000355930	ENST00000495823		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
In-frame	ENST00000429426	ENST00000376238		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000429426	ENST00000537648		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000429426	ENST00000495823		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
intron-3CDS	ENST00000475957	ENST00000376238		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000475957	ENST00000537648		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000475957	ENST00000495823		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
intron-3CDS	ENST00000380321	ENST00000376238		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000380321	ENST00000537648		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000380321	ENST00000495823		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	MLLT3	chr9	20456702	-	SLC28A3	chr9	86928369	-
Frame-shit	ENST00000318217	ENST00000538566		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000318217	ENST00000328886		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000394649	ENST00000538566		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000394649	ENST00000328886		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000579584	ENST00000538566		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000579584	ENST00000328886		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000584232	ENST00000538566		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000584232	ENST00000328886		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000583621	ENST00000538566		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000583621	ENST00000328886		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
5CDS-intron	ENST00000441750	ENST00000330266		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000441750	ENST00000405975		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000441750	ENST00000415080		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000441750	ENST00000405006		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-intron	ENST00000441750	ENST00000485353		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-intron	ENST00000441750	ENST00000402360		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000441750	ENST00000404790		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000441750	ENST00000403856		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-intron	ENST00000281513	ENST00000330266		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000281513	ENST00000405975		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000281513	ENST00000415080		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000281513	ENST00000405006		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-intron	ENST00000281513	ENST00000485353		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-intron	ENST00000281513	ENST00000402360		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000281513	ENST00000404790		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
5CDS-5UTR	ENST00000281513	ENST00000403856		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NBAS	chr2	15467874	-	THADA	chr2	43819555	-
Frame-shit	ENST00000356462	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000356462	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000356462	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000356462	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000356462	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000400345	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000400345	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000400345	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000400345	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000400345	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-3CDS	ENST00000589054	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-3CDS	ENST00000589054	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-5UTR	ENST00000589054	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-intron	ENST00000589054	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-intron	ENST00000589054	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000256832	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000256832	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-5UTR	ENST00000256832	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-intron	ENST00000256832	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-intron	ENST00000256832	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000382850	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000382850	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000382850	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000382850	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000382850	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000256830	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000256830	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000256830	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000256830	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000256830	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
3UTR-3CDS	ENST00000588516	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
3UTR-3CDS	ENST00000588516	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
3UTR-5UTR	ENST00000588516	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
3UTR-intron	ENST00000588516	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
3UTR-intron	ENST00000588516	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000456986	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000456986	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-5UTR	ENST00000456986	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-intron	ENST00000456986	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-intron	ENST00000456986	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000435432	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000435432	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-5UTR	ENST00000435432	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-intron	ENST00000435432	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-intron	ENST00000435432	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000357895	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000357895	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000357895	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000357895	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000357895	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000586263	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
Frame-shit	ENST00000586263	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000586263	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000586263	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5CDS-intron	ENST00000586263	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-3CDS	ENST00000456173	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-3CDS	ENST00000456173	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-5UTR	ENST00000456173	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-intron	ENST00000456173	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-intron	ENST00000456173	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-3CDS	ENST00000431212	ENST00000398117		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-3CDS	ENST00000431212	ENST00000333681		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-5UTR	ENST00000431212	ENST00000590515		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-intron	ENST00000431212	ENST00000589955		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
intron-intron	ENST00000431212	ENST00000444484		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	NEDD4L	chr18	55833093	+	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000245441	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000245441	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000245441	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3CDS	ENST00000389868	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000389868	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000389868	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
intron-3CDS	ENST00000530997	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
intron-3UTR	ENST00000530997	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
intron-3UTR	ENST00000530997	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3CDS	ENST00000382043	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000382043	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000382043	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3CDS	ENST00000382041	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000382041	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000382041	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3CDS	ENST00000324330	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000324330	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000324330	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3CDS	ENST00000453196	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000453196	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5UTR-3UTR	ENST00000453196	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
intron-3CDS	ENST00000486200	ENST00000361577		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
intron-3UTR	ENST00000486200	ENST00000382233		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
intron-3UTR	ENST00000486200	ENST00000361462		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NIN	chr14	51297182	-	FAM179B	chr14	45521639	+
5CDS-intron	ENST00000430223	ENST00000341084		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000430223	ENST00000519449		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000430223	ENST00000523255		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000341166	ENST00000341084		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000341166	ENST00000519449		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000341166	ENST00000523255		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000520545	ENST00000341084		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000520545	ENST00000519449		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000520545	ENST00000523255		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NIPAL2	chr8	99215336	-	RNF19A	chr8	101325600	-
In-frame	ENST00000263388	ENST00000245907		TCGA	RV	BRCA	TCGA-B6-A402-01A	NOTCH3	chr19	15270445	-	C3	chr19	6720693	-
5CDS-intron	ENST00000263388	ENST00000599668		TCGA	RV	BRCA	TCGA-B6-A402-01A	NOTCH3	chr19	15270445	-	C3	chr19	6720693	-
Frame-shit	ENST00000343289	ENST00000329446		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124458928	-
Frame-shit	ENST00000404739	ENST00000329446		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124458928	-
intron-3CDS	ENST00000369857	ENST00000329446		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124458928	-
intron-3CDS	ENST00000423468	ENST00000329446		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124458928	-
Frame-shit	ENST00000470299	ENST00000329446		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124458928	-
5UTR-intron	ENST00000356341	ENST00000398907		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000356341	ENST00000398905		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000356341	ENST00000288319		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000356341	ENST00000398897		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000356341	ENST00000398911		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000356341	ENST00000398910		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000356341	ENST00000417133		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000356341	ENST00000442448		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000356341	ENST00000453032		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000356341	ENST00000398919		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000356341	ENST00000429727		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000356341	ENST00000485493		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000398907		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000398905		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000288319		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000398897		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000398911		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000530617	ENST00000398910		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000530617	ENST00000417133		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000530617	ENST00000442448		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000453032		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000530617	ENST00000398919		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000530617	ENST00000429727		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000530617	ENST00000485493		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000398907		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000398905		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000288319		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000398897		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000398911		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000278568	ENST00000398910		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000278568	ENST00000417133		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000278568	ENST00000442448		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000453032		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000278568	ENST00000398919		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000278568	ENST00000429727		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000278568	ENST00000485493		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000398907		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000398905		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000288319		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000398897		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000398911		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000528203	ENST00000398910		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000528203	ENST00000417133		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000528203	ENST00000442448		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000453032		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000528203	ENST00000398919		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000528203	ENST00000429727		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000528203	ENST00000485493		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000398907		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000398905		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000288319		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000398897		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000398911		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000525542	ENST00000398910		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000525542	ENST00000417133		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000525542	ENST00000442448		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000453032		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000525542	ENST00000398919		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-intron	ENST00000525542	ENST00000429727		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000525542	ENST00000485493		TCGA	RV	BRCA	TCGA-LL-A441-01A	PAK1	chr11	77184597	-	ERG	chr21	39956869	-
Frame-shit	ENST00000361175	ENST00000371996		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
In-frame	ENST00000361175	ENST00000371994		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000361175	ENST00000536010		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000361175	ENST00000472891		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000456849	ENST00000371996		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
In-frame	ENST00000456849	ENST00000371994		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000456849	ENST00000536010		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000456849	ENST00000472891		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000427144	ENST00000371996		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000427144	ENST00000371994		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000427144	ENST00000536010		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3UTR	ENST00000427144	ENST00000472891		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000482258	ENST00000371996		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000482258	ENST00000371994		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000482258	ENST00000536010		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
intron-3UTR	ENST00000482258	ENST00000472891		TCGA	RV	BRCA	TCGA-AO-A0JL-01A	PAPSS2	chr10	89419765	+	MINPP1	chr10	89311839	+
5CDS-intron	ENST00000359282	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000359282	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000359282	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000603815	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000603815	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000603815	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000437231	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000437231	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000437231	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000447282	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000447282	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000447282	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000549863	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000549863	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000549863	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000359462	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000359462	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000359462	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000546463	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000546463	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000546463	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000552296	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000552296	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000552296	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000552819	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000552819	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000552819	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000455667	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000455667	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
3UTR-intron	ENST00000455667	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000439930	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000439930	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000439930	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000548933	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000548933	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000548933	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000541275	ENST00000280653		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000541275	ENST00000471841		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
intron-intron	ENST00000541275	ENST00000263969		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCBP2	chr12	53873616	+	MFN1	chr3	179096011	+
5CDS-5UTR	ENST00000329654	ENST00000342505		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000329654	ENST00000465376		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000371049	ENST00000342505		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000371049	ENST00000465376		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000423207	ENST00000342505		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000423207	ENST00000465376		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
intron-5UTR	ENST00000371048	ENST00000342505		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
intron-intron	ENST00000371048	ENST00000465376		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000371045	ENST00000342505		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000371045	ENST00000465376		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
intron-5UTR	ENST00000480109	ENST00000342505		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
intron-intron	ENST00000480109	ENST00000465376		TCGA	RV	BRCA	TCGA-A8-A0A1-01A	PDE4B	chr1	66798303	+	JAK1	chr1	65352024	-
Frame-shit	ENST00000342085	ENST00000397066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588137	+	CCNF	chr16	2495459	+
Frame-shit	ENST00000441549	ENST00000397066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588137	+	CCNF	chr16	2495459	+
Frame-shit	ENST00000268673	ENST00000397066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588137	+	CCNF	chr16	2495459	+
Frame-shit	ENST00000354836	ENST00000397066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588137	+	CCNF	chr16	2495459	+
intron-3CDS	ENST00000389224	ENST00000397066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588137	+	CCNF	chr16	2495459	+
intron-3CDS	ENST00000471311	ENST00000397066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588137	+	CCNF	chr16	2495459	+
5CDS-5UTR	ENST00000303538	ENST00000319592		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000303538	ENST00000381793		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000303538	ENST00000381795		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000303538	ENST00000295971		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-intron	ENST00000303538	ENST00000514014		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-intron	ENST00000303538	ENST00000515809		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000503396	ENST00000319592		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000503396	ENST00000381793		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000503396	ENST00000381795		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-5UTR	ENST00000503396	ENST00000295971		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-intron	ENST00000503396	ENST00000514014		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
5CDS-intron	ENST00000503396	ENST00000515809		TCGA	RV	BRCA	TCGA-C8-A130-01A	PDS5A	chr4	39978060	-	RBM47	chr4	40468716	-
In-frame	ENST00000298198	ENST00000356136		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
In-frame	ENST00000298198	ENST00000528420		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000298198	ENST00000533454		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000298198	ENST00000531818		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000298198	ENST00000532130		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000298198	ENST00000539288		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000298198	ENST00000525872		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000298198	ENST00000538870		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PGM2L1	chr11	74109096	-	UVRAG	chr11	75694431	+
In-frame	ENST00000262043	ENST00000503581		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000262043	ENST00000370621		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000262043	ENST00000370616		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000262043	ENST00000393380		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000262043	ENST00000342421		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000262043	ENST00000370618		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000262043	ENST00000486069		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000509330	ENST00000503581		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000509330	ENST00000370621		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000509330	ENST00000370616		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000509330	ENST00000393380		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000509330	ENST00000342421		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000509330	ENST00000370618		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000509330	ENST00000486069		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000393387	ENST00000503581		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000393387	ENST00000370621		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
In-frame	ENST00000393387	ENST00000370616		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000393387	ENST00000393380		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000393387	ENST00000342421		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000393387	ENST00000370618		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000393387	ENST00000486069		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-3CDS	ENST00000420043	ENST00000503581		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-3CDS	ENST00000420043	ENST00000370621		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-3CDS	ENST00000420043	ENST00000370616		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-intron	ENST00000420043	ENST00000393380		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-intron	ENST00000420043	ENST00000342421		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-intron	ENST00000420043	ENST00000370618		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
intron-intron	ENST00000420043	ENST00000486069		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PHF3	chr6	64356700	+	EYS	chr6	64791895	-
Frame-shit	ENST00000422959	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
In-frame	ENST00000422959	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000422959	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
5CDS-intron	ENST00000422959	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000307305	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
In-frame	ENST00000307305	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000307305	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
5CDS-intron	ENST00000307305	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000424760	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000424760	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000424760	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-intron	ENST00000424760	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000415251	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000415251	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000415251	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-intron	ENST00000415251	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000275575	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
In-frame	ENST00000275575	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000275575	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
5CDS-intron	ENST00000275575	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000450574	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000450574	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000450574	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-intron	ENST00000450574	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000416283	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
In-frame	ENST00000416283	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000416283	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
5CDS-intron	ENST00000416283	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000248550	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
In-frame	ENST00000248550	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000248550	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
5CDS-intron	ENST00000248550	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000454592	ENST00000338056		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000454592	ENST00000493037		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-3CDS	ENST00000454592	ENST00000394654		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
intron-intron	ENST00000454592	ENST00000496000		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	PHTF2	chr7	77583211	+	RUNDC3B	chr7	87459200	+
Frame-shit	ENST00000477593	ENST00000452898		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
Frame-shit	ENST00000477593	ENST00000286364		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
5CDS-intron	ENST00000477593	ENST00000509118		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
Frame-shit	ENST00000544716	ENST00000452898		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
Frame-shit	ENST00000544716	ENST00000286364		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
5CDS-intron	ENST00000544716	ENST00000509118		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
In-frame	ENST00000289153	ENST00000452898		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
In-frame	ENST00000289153	ENST00000286364		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
5CDS-intron	ENST00000289153	ENST00000509118		TCGA	RV	BRCA	TCGA-AQ-A7U7-01A	PIK3CB	chr3	138383878	-	RASA2	chr3	141235170	+
intron-5UTR	ENST00000334005	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
intron-5UTR	ENST00000378473	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
intron-5UTR	ENST00000278655	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
intron-5UTR	ENST00000414679	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
intron-5UTR	ENST00000492632	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
intron-5UTR	ENST00000378501	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
intron-5UTR	ENST00000378493	ENST00000378827		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	PLCB4	chr20	9049550	+	BMP2	chr20	6750767	+
In-frame	ENST00000369091	ENST00000368919		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369091	ENST00000330550		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369091	ENST00000439654		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000369091	ENST00000456137		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000369091	ENST00000461487		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369096	ENST00000368919		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369096	ENST00000330550		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369096	ENST00000439654		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000369096	ENST00000456137		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000369096	ENST00000461487		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369089	ENST00000368919		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369089	ENST00000330550		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000369089	ENST00000439654		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000369089	ENST00000456137		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000369089	ENST00000461487		TCGA	RV	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110763978	-
In-frame	ENST00000265563	ENST00000430379		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000265563	ENST00000319017		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
5CDS-5UTR	ENST00000265563	ENST00000544097		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000454963	ENST00000430379		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000454963	ENST00000319017		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
5CDS-5UTR	ENST00000454963	ENST00000544097		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000296446	ENST00000430379		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000296446	ENST00000319017		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
5CDS-5UTR	ENST00000296446	ENST00000544097		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PRKAR2A	chr3	48884768	-	SLC25A20	chr3	48929505	-
In-frame	ENST00000413366	ENST00000290341		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	PRKCA	chr17	64302245	+	IGF2BP1	chr17	47126714	+
Frame-shit	ENST00000413366	ENST00000431824		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	PRKCA	chr17	64302245	+	IGF2BP1	chr17	47126714	+
5CDS-intron	ENST00000413366	ENST00000515586		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	PRKCA	chr17	64302245	+	IGF2BP1	chr17	47126714	+
3UTR-3CDS	ENST00000583361	ENST00000290341		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	PRKCA	chr17	64302245	+	IGF2BP1	chr17	47126714	+
3UTR-3CDS	ENST00000583361	ENST00000431824		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	PRKCA	chr17	64302245	+	IGF2BP1	chr17	47126714	+
3UTR-intron	ENST00000583361	ENST00000515586		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	PRKCA	chr17	64302245	+	IGF2BP1	chr17	47126714	+
5UTR-3CDS	ENST00000342362	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-intron	ENST00000342362	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-intron	ENST00000342362	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-intron	ENST00000342362	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-3CDS	ENST00000382002	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-intron	ENST00000382002	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-intron	ENST00000382002	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
5UTR-intron	ENST00000382002	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000231423	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000231423	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000231423	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000231423	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000513753	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000513753	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000513753	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000513753	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000397391	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000397391	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000397391	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000397391	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000348262	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000348262	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000348262	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000348262	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000542609	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000542609	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000542609	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000542609	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000310101	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000310101	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000310101	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000310101	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000511486	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000511486	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000511486	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000511486	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-3CDS	ENST00000509934	ENST00000314358		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000509934	ENST00000394866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000509934	ENST00000542866		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
intron-intron	ENST00000509934	ENST00000508386		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PRLR	chr5	35230370	-	KDM3B	chr5	137708363	+
In-frame	ENST00000356126	ENST00000580974		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000356126	ENST00000299954		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000356126	ENST00000335257		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000356126	ENST00000581322		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000357146	ENST00000580974		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000357146	ENST00000299954		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000357146	ENST00000335257		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000357146	ENST00000581322		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000581618	ENST00000580974		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000581618	ENST00000299954		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000581618	ENST00000335257		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000581618	ENST00000581322		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PSMD12	chr17	65362528	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000381196	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000381196	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000381196	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000381196	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000360074	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000360074	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000360074	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000360074	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000537002	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000537002	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000537002	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000537002	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000397617	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397617	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397617	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397617	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000358503	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000358503	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000358503	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000358503	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000397611	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397611	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397611	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397611	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000355233	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000355233	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000355233	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000355233	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000356435	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000356435	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000356435	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000356435	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000540109	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000540109	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000540109	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000540109	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000486161	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000486161	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000486161	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000486161	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000397606	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397606	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397606	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000397606	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
5UTR-3CDS	ENST00000463477	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
5UTR-5UTR	ENST00000463477	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
5UTR-5UTR	ENST00000463477	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
5UTR-5UTR	ENST00000463477	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-3CDS	ENST00000471274	ENST00000249071		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000471274	ENST00000406508		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000471274	ENST00000405484		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
intron-5UTR	ENST00000471274	ENST00000401529		TCGA	RV	BRCA	TCGA-E9-A54X-01A	PTPRD	chr9	10612398	-	RAC2	chr22	37637698	-
Frame-shit	ENST00000368226	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368226	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368226	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368226	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368226	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368226	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368226	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368226	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368226	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368226	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368226	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368227	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368227	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368227	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368227	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368227	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368227	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368227	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368227	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368227	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368227	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368227	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000532331	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000532331	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000532331	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000532331	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000532331	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000532331	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000532331	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000532331	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000532331	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000532331	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000532331	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368213	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368213	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368213	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368213	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368213	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368213	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368213	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368213	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368213	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368213	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368213	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368210	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368210	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368210	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368210	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368210	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368210	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368210	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368210	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368210	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368210	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368210	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368215	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368215	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368215	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368215	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368215	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368215	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368215	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368215	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368215	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368215	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368215	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368207	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368207	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000368207	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368207	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000368207	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368207	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368207	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368207	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368207	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368207	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000368207	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-3CDS	ENST00000524481	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-3CDS	ENST00000524481	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-3CDS	ENST00000524481	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-5UTR	ENST00000524481	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-5UTR	ENST00000524481	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-intron	ENST00000524481	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-intron	ENST00000524481	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-intron	ENST00000524481	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-intron	ENST00000524481	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-intron	ENST00000524481	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5UTR-intron	ENST00000524481	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000525459	ENST00000445937		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000525459	ENST00000531443		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
Frame-shit	ENST00000525459	ENST00000517566		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000525459	ENST00000452423		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-5UTR	ENST00000525459	ENST00000442977		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000525459	ENST00000521963		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000525459	ENST00000312046		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000525459	ENST00000449762		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000525459	ENST00000297447		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000525459	ENST00000521592		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
5CDS-intron	ENST00000525459	ENST00000497705		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PTPRK	chr6	128841404	-	OXR1	chr8	107531171	+
In-frame	ENST00000275262	ENST00000337019		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000275262	ENST00000366889		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000275262	ENST00000366888		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000275262	ENST00000542669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000392127	ENST00000337019		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000392127	ENST00000366889		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000392127	ENST00000366888		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000392127	ENST00000542669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000453779	ENST00000337019		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000453779	ENST00000366889		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000453779	ENST00000366888		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000453779	ENST00000542669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361752	ENST00000337019		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361752	ENST00000366889		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361752	ENST00000366888		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361752	ENST00000542669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361195	ENST00000337019		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361195	ENST00000366889		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361195	ENST00000366888		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361195	ENST00000542669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000424802	ENST00000337019		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000424802	ENST00000366889		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000424802	ENST00000366888		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000424802	ENST00000542669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000264158	ENST00000356140		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000264158	ENST00000283054		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000264158	ENST00000392928		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000539493	ENST00000356140		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000539493	ENST00000283054		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000539493	ENST00000392928		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000442034	ENST00000356140		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000442034	ENST00000283054		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000442034	ENST00000392928		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
3UTR-3CDS	ENST00000487003	ENST00000356140		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
3UTR-3CDS	ENST00000487003	ENST00000283054		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
3UTR-3CDS	ENST00000487003	ENST00000392928		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000425393	ENST00000356140		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000425393	ENST00000283054		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000425393	ENST00000392928		TCGA	RV	BRCA	TCGA-AR-A5QQ-01A	RAB3GAP1	chr2	135851263	+	ACMSD	chr2	135655911	+
5CDS-5UTR	ENST00000011619	ENST00000309983		TCGA	RV	BRCA	TCGA-C8-A12U-01A	RANBP9	chr6	13711167	-	TPMT	chr6	18149402	-
intron-5UTR	ENST00000469916	ENST00000309983		TCGA	RV	BRCA	TCGA-C8-A12U-01A	RANBP9	chr6	13711167	-	TPMT	chr6	18149402	-
intron-5UTR	ENST00000539980	ENST00000309983		TCGA	RV	BRCA	TCGA-C8-A12U-01A	RANBP9	chr6	13711167	-	TPMT	chr6	18149402	-
In-frame	ENST00000442092	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000442092	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
5CDS-3UTR	ENST00000442092	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000266022	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000266022	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
5CDS-3UTR	ENST00000266022	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000443081	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000443081	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
5CDS-3UTR	ENST00000443081	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000539992	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000539992	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
5CDS-3UTR	ENST00000539992	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
3UTR-3CDS	ENST00000441115	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
3UTR-3CDS	ENST00000441115	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
3UTR-3UTR	ENST00000441115	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000422955	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
In-frame	ENST00000422955	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
5CDS-3UTR	ENST00000422955	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
intron-3CDS	ENST00000421682	ENST00000356401		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
intron-3CDS	ENST00000421682	ENST00000449376		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
intron-3UTR	ENST00000421682	ENST00000490095		TCGA	RV	BRCA	TCGA-BH-A1EO-01A	RBM6	chr3	50099541	+	ARIH2	chr3	48999045	+
5UTR-3CDS	ENST00000382004	ENST00000357248		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000382004	ENST00000349721		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000382004	ENST00000382203		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000382004	ENST00000382194		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000382004	ENST00000491574		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000382004	ENST00000324954		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000382004	ENST00000302401		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000382004	ENST00000382186		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000382004	ENST00000382185		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000358730	ENST00000357248		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000358730	ENST00000349721		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000358730	ENST00000382203		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000358730	ENST00000382194		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000358730	ENST00000491574		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000358730	ENST00000324954		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000358730	ENST00000302401		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000358730	ENST00000382186		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000358730	ENST00000382185		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000302303	ENST00000357248		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000302303	ENST00000349721		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000302303	ENST00000382203		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-3CDS	ENST00000302303	ENST00000382194		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000302303	ENST00000491574		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000302303	ENST00000324954		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000302303	ENST00000302401		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000302303	ENST00000382186		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
5UTR-intron	ENST00000302303	ENST00000382185		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000381984	ENST00000357248		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000381984	ENST00000349721		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000381984	ENST00000382203		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-3CDS	ENST00000381984	ENST00000382194		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000381984	ENST00000491574		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000381984	ENST00000324954		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000381984	ENST00000302401		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000381984	ENST00000382186		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
intron-intron	ENST00000381984	ENST00000382185		TCGA	RV	BRCA	TCGA-AN-A049-01A	RFX3	chr9	3525747	-	SMARCA2	chr9	2070418	+
In-frame	ENST00000543385	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000543385	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000543385	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000336727	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000336727	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000336727	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000344733	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000344733	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000344733	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000382788	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000382788	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000382788	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000306648	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000306648	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000306648	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000338806	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000338806	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000338806	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000508158	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000508158	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000508158	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000538395	ENST00000455332		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000538395	ENST00000260187		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000538395	ENST00000525735		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	USP2	chr11	119230944	-
In-frame	ENST00000357387	ENST00000296604		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000357387	ENST00000502994		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000357387	ENST00000515759		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000296782	ENST00000296604		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000296782	ENST00000502994		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000296782	ENST00000515759		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000503698	ENST00000296604		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000503698	ENST00000502994		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000503698	ENST00000515759		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	RICTOR	chr5	39074213	-	RANBP3L	chr5	36271413	-
intron-intron	ENST00000543885	ENST00000426838		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000543885	ENST00000282030		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
5CDS-intron	ENST00000269439	ENST00000426838		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
5CDS-intron	ENST00000269439	ENST00000282030		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000587853	ENST00000426838		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000587853	ENST00000282030		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000590330	ENST00000426838		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000590330	ENST00000282030		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000588679	ENST00000426838		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-intron	ENST00000588679	ENST00000282030		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	RNF165	chr18	44015359	+	SETBP1	chr18	42529846	+
intron-3CDS	ENST00000464233	ENST00000260983		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
intron-3CDS	ENST00000464233	ENST00000409111		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
Frame-shit	ENST00000436010	ENST00000260983		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
Frame-shit	ENST00000436010	ENST00000409111		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
Frame-shit	ENST00000495273	ENST00000260983		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
Frame-shit	ENST00000495273	ENST00000409111		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
Frame-shit	ENST00000467549	ENST00000260983		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
Frame-shit	ENST00000467549	ENST00000409111		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
intron-3CDS	ENST00000466906	ENST00000260983		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
intron-3CDS	ENST00000466906	ENST00000409111		TCGA	RV	BRCA	TCGA-A7-A26F-01A	ROBO1	chr3	79067557	-	HECW2	chr2	197106928	-
5CDS-intron	ENST00000335670	ENST00000377715		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000335670	ENST00000409009		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000335670	ENST00000264448		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000335670	ENST00000464408		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000309157	ENST00000377715		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000309157	ENST00000409009		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000309157	ENST00000264448		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000309157	ENST00000464408		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000261523	ENST00000377715		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000261523	ENST00000409009		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000261523	ENST00000264448		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000261523	ENST00000464408		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000449337	ENST00000377715		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000449337	ENST00000409009		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000449337	ENST00000264448		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000449337	ENST00000464408		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000560004	ENST00000377715		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000560004	ENST00000409009		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000560004	ENST00000264448		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
intron-intron	ENST00000560004	ENST00000464408		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RORA	chr15	61521252	-	ALMS1	chr2	73716761	+
In-frame	ENST00000409003	ENST00000533895		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
In-frame	ENST00000409003	ENST00000424158		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
In-frame	ENST00000409003	ENST00000532779		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
In-frame	ENST00000409003	ENST00000399066		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
In-frame	ENST00000409003	ENST00000446070		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000528331		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000276646		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000528647		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000440310		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000433638		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000408908		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000408889		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000422135		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000419099		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000533065		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000533171		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000409003	ENST00000529175		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000409003	ENST00000529690		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000409003	ENST00000527707		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000314727	ENST00000533895		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000314727	ENST00000424158		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000314727	ENST00000532779		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000314727	ENST00000399066		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000314727	ENST00000446070		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000528331		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000276646		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000528647		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000440310		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000433638		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000408908		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000408889		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000422135		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000419099		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000533065		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000314727	ENST00000533171		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-intron	ENST00000314727	ENST00000529175		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-intron	ENST00000314727	ENST00000529690		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
intron-intron	ENST00000314727	ENST00000527707		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-3CDS	ENST00000527515	ENST00000533895		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-3CDS	ENST00000527515	ENST00000424158		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-3CDS	ENST00000527515	ENST00000532779		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-3CDS	ENST00000527515	ENST00000399066		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-3CDS	ENST00000527515	ENST00000446070		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000528331		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000276646		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000528647		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000440310		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000433638		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000408908		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000408889		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000422135		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000419099		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000533065		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-5UTR	ENST00000527515	ENST00000533171		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-intron	ENST00000527515	ENST00000529175		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-intron	ENST00000527515	ENST00000529690		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5UTR-intron	ENST00000527515	ENST00000527707		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	SAMD12	chr8	119391799	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000409003	ENST00000533895		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-5UTR	ENST00000409003	ENST00000424158		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000532779		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000399066		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000446070		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000528331		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000276646		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000528647		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000440310		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-5UTR	ENST00000409003	ENST00000433638		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000408908		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000408889		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000422135		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000419099		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000533065		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000533171		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000529175		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000529690		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-intron	ENST00000409003	ENST00000527707		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-5UTR	ENST00000314727	ENST00000533895		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-5UTR	ENST00000314727	ENST00000424158		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000532779		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000399066		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000446070		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000528331		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000276646		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000528647		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000440310		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-5UTR	ENST00000314727	ENST00000433638		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000408908		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000408889		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000422135		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000419099		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000533065		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000533171		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000529175		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000529690		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
intron-intron	ENST00000314727	ENST00000527707		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-5UTR	ENST00000527515	ENST00000533895		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-5UTR	ENST00000527515	ENST00000424158		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000532779		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000399066		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000446070		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000528331		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000276646		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000528647		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000440310		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-5UTR	ENST00000527515	ENST00000433638		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000408908		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000408889		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000422135		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000419099		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000533065		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000533171		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000529175		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000529690		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5UTR-intron	ENST00000527515	ENST00000527707		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	SAMD12	chr8	119391799	-	SYBU	chr8	110658233	-
5CDS-5UTR	ENST00000256190	ENST00000301665		TCGA	RV	BRCA	TCGA-A8-A08L-01A	SBF2	chr11	10215449	-	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000256190	ENST00000496847		TCGA	RV	BRCA	TCGA-A8-A08L-01A	SBF2	chr11	10215449	-	TMEM99	chr17	38989367	+
intron-5UTR	ENST00000527019	ENST00000301665		TCGA	RV	BRCA	TCGA-A8-A08L-01A	SBF2	chr11	10215449	-	TMEM99	chr17	38989367	+
intron-intron	ENST00000527019	ENST00000496847		TCGA	RV	BRCA	TCGA-A8-A08L-01A	SBF2	chr11	10215449	-	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000244926	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000244926	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000244926	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000244926	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000244926	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000244926	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000244926	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394681	ENST00000360359		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35085023	+
5CDS-intron	ENST00000394681	ENST00000535627		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35085023	+
5CDS-intron	ENST00000394681	ENST00000470698		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35085023	+
5CDS-intron	ENST00000274938	ENST00000360359		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35085023	+
5CDS-intron	ENST00000274938	ENST00000535627		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35085023	+
5CDS-intron	ENST00000274938	ENST00000470698		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35085023	+
intron-3CDS	ENST00000394752	ENST00000296292		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
intron-3CDS	ENST00000394752	ENST00000394738		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
5UTR-3CDS	ENST00000394750	ENST00000296292		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
5UTR-3CDS	ENST00000394750	ENST00000394738		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
5UTR-3CDS	ENST00000358080	ENST00000296292		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
5UTR-3CDS	ENST00000358080	ENST00000394738		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
intron-3CDS	ENST00000296295	ENST00000296292		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
intron-3CDS	ENST00000296295	ENST00000394738		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
5UTR-3CDS	ENST00000470575	ENST00000296292		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
5UTR-3CDS	ENST00000470575	ENST00000394738		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	SFMBT1	chr3	53077152	-	RFT1	chr3	53160010	-
intron-intron	ENST00000449833	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000449833	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000449833	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000449833	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449833	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000409161	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000409161	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000409161	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409161	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000423696	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000423696	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000423696	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000423696	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-5UTR	ENST00000338508	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-5UTR	ENST00000338508	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-5UTR	ENST00000338508	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-intron	ENST00000338508	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000409530	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000409530	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000409530	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000409530	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000449116	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000449116	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000449116	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000449116	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000357171	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000357171	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000357171	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000357171	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000519416		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000520615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000443286		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000520340		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000518415		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000522752		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000348567		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000330691		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000468619	ENST00000317827		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000468619	ENST00000379931		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-5UTR	ENST00000468619	ENST00000276520		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000520973		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
intron-intron	ENST00000468619	ENST00000520611		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	SHANK2	chr11	70803468	-	TACC1	chr8	38645075	+
5CDS-5UTR	ENST00000304987	ENST00000539801		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
5CDS-5UTR	ENST00000304987	ENST00000381652		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
5CDS-intron	ENST00000304987	ENST00000544510		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
5CDS-intron	ENST00000304987	ENST00000487310		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
intron-5UTR	ENST00000533868	ENST00000539801		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
intron-5UTR	ENST00000533868	ENST00000381652		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
intron-intron	ENST00000533868	ENST00000544510		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
intron-intron	ENST00000533868	ENST00000487310		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	SIK2	chr11	111491126	+	JAK2	chr9	5021963	+
5CDS-5UTR	ENST00000222345	ENST00000537055		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SIPA1L3	chr19	38684420	+	ZNF835	chr19	57176613	-
intron-5UTR	ENST00000476317	ENST00000537055		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SIPA1L3	chr19	38684420	+	ZNF835	chr19	57176613	-
Frame-shit	ENST00000393469	ENST00000186436		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
Frame-shit	ENST00000393469	ENST00000425805		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
intron-3CDS	ENST00000423114	ENST00000186436		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
intron-3CDS	ENST00000423114	ENST00000425805		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
Frame-shit	ENST00000469902	ENST00000186436		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
Frame-shit	ENST00000469902	ENST00000425805		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
5UTR-3CDS	ENST00000314584	ENST00000186436		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
5UTR-3CDS	ENST00000314584	ENST00000425805		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
intron-3CDS	ENST00000430155	ENST00000186436		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
intron-3CDS	ENST00000430155	ENST00000425805		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
intron-3CDS	ENST00000465475	ENST00000186436		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
intron-3CDS	ENST00000465475	ENST00000425805		TCGA	RV	BRCA	TCGA-AO-A12C-01A	SLC12A8	chr3	124930143	-	TMEM131	chr2	98543950	-
Frame-shit	ENST00000219334	ENST00000308724		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000219334	ENST00000397120		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000219334	ENST00000556277		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000568373	ENST00000308724		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000568373	ENST00000397120		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000568373	ENST00000556277		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000563226	ENST00000308724		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000563226	ENST00000397120		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000563226	ENST00000556277		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000566009	ENST00000308724		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000566009	ENST00000397120		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000566009	ENST00000556277		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	SMPD3	chr16	68392230	-	AP1G2	chr14	24037279	-
5CDS-5UTR	ENST00000336278	ENST00000338482		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	SNTB2	chr16	69294163	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000336278	ENST00000572450		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	SNTB2	chr16	69294163	+	CHST4	chr16	71570563	+
5CDS-5UTR	ENST00000336278	ENST00000539698		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	SNTB2	chr16	69294163	+	CHST4	chr16	71570563	+
3UTR-5UTR	ENST00000528525	ENST00000338482		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	SNTB2	chr16	69294163	+	CHST4	chr16	71570563	+
3UTR-5UTR	ENST00000528525	ENST00000572450		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	SNTB2	chr16	69294163	+	CHST4	chr16	71570563	+
3UTR-5UTR	ENST00000528525	ENST00000539698		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	SNTB2	chr16	69294163	+	CHST4	chr16	71570563	+
5CDS-intron	ENST00000331159	ENST00000379350		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000379348		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000332995		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000482982		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000379345		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000457702		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000379335		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000331159	ENST00000379329		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000379350		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000379348		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000332995		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000482982		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000379345		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000457702		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000379335		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000577233	ENST00000379329		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	SOCS7	chr17	36517658	+	PHACTR1	chr6	12933865	+
In-frame	ENST00000274008	ENST00000265148		TCGA	RV	BRCA	TCGA-E2-A15K-01A	SPATA5	chr4	123900541	+	CENPE	chr4	104098203	-
In-frame	ENST00000274008	ENST00000380026		TCGA	RV	BRCA	TCGA-E2-A15K-01A	SPATA5	chr4	123900541	+	CENPE	chr4	104098203	-
5CDS-intron	ENST00000274008	ENST00000509120		TCGA	RV	BRCA	TCGA-E2-A15K-01A	SPATA5	chr4	123900541	+	CENPE	chr4	104098203	-
3UTR-3CDS	ENST00000422835	ENST00000265148		TCGA	RV	BRCA	TCGA-E2-A15K-01A	SPATA5	chr4	123900541	+	CENPE	chr4	104098203	-
3UTR-3CDS	ENST00000422835	ENST00000380026		TCGA	RV	BRCA	TCGA-E2-A15K-01A	SPATA5	chr4	123900541	+	CENPE	chr4	104098203	-
3UTR-intron	ENST00000422835	ENST00000509120		TCGA	RV	BRCA	TCGA-E2-A15K-01A	SPATA5	chr4	123900541	+	CENPE	chr4	104098203	-
Frame-shit	ENST00000556553	ENST00000370314		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
Frame-shit	ENST00000556553	ENST00000535043		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
5CDS-intron	ENST00000556553	ENST00000497894		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
Frame-shit	ENST00000393545	ENST00000370314		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
In-frame	ENST00000393545	ENST00000535043		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
5CDS-intron	ENST00000393545	ENST00000497894		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
In-frame	ENST00000356583	ENST00000370314		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
Frame-shit	ENST00000356583	ENST00000535043		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
5CDS-intron	ENST00000356583	ENST00000497894		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
intron-3CDS	ENST00000554102	ENST00000370314		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
intron-3CDS	ENST00000554102	ENST00000535043		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
intron-intron	ENST00000554102	ENST00000497894		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
In-frame	ENST00000045347	ENST00000370314		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
Frame-shit	ENST00000045347	ENST00000535043		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
5CDS-intron	ENST00000045347	ENST00000497894		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	SPATA7	chr14	88904247	+	GABRA3	chrX	151337035	-
5UTR-3CDS	ENST00000262915	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000262915	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000372375	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000372375	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000351035	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000351035	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000372374	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000372374	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000353126	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000353126	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000545417	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000545417	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000330208	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000330208	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000335430	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000335430	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000372377	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000372377	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000361392	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000361392	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000361400	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000361400	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-3CDS	ENST00000347631	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
5UTR-intron	ENST00000347631	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000361812	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000361812	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372362	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372362	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000531451	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000531451	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372366	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372366	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372365	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372365	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372368	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372368	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000332628	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000332628	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372372	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372372	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000531816	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000531816	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000528371	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000528371	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372369	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372369	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000531993	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000531993	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000361746	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000361746	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000533933	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000533933	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000372367	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000372367	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-3CDS	ENST00000461375	ENST00000372396		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
intron-intron	ENST00000461375	ENST00000463151		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	ST3GAL3	chr1	44173364	+	KDM4A	chr1	44169288	+
Frame-shit	ENST00000526757	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
Frame-shit	ENST00000526757	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
Frame-shit	ENST00000526757	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
5CDS-intron	ENST00000526757	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000534127	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000534127	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000534127	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
5CDS-intron	ENST00000534127	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000313726	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000313726	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000313726	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
5CDS-intron	ENST00000313726	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000357665	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000357665	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000357665	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
5CDS-intron	ENST00000357665	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000530438	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000530438	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
In-frame	ENST00000530438	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
5CDS-intron	ENST00000530438	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000530991	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000530991	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000530991	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-intron	ENST00000530991	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000526099	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000526099	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000526099	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-intron	ENST00000526099	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000534278	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000534278	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000534278	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-intron	ENST00000534278	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000531237	ENST00000328194		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000531237	ENST00000530044		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-3CDS	ENST00000531237	ENST00000527700		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
intron-intron	ENST00000531237	ENST00000526523		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ST5	chr11	8772168	-	DENND5A	chr11	9163655	-
5CDS-5UTR	ENST00000397517	ENST00000541509		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000397517	ENST00000265382		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-intron	ENST00000397517	ENST00000474356		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000539966	ENST00000541509		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000539966	ENST00000265382		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-intron	ENST00000539966	ENST00000474356		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5UTR-5UTR	ENST00000481288	ENST00000541509		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5UTR-5UTR	ENST00000481288	ENST00000265382		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5UTR-intron	ENST00000481288	ENST00000474356		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000376547	ENST00000541509		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000376547	ENST00000265382		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
5CDS-intron	ENST00000376547	ENST00000474356		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	STK24	chr13	99171497	-	PIP5K1B	chr9	71433377	+
intron-5UTR	ENST00000378654	ENST00000490131		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000378654	ENST00000498619		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-intron	ENST00000378654	ENST00000296154		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000544100	ENST00000490131		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000544100	ENST00000498619		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-intron	ENST00000544100	ENST00000296154		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000534875	ENST00000490131		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000534875	ENST00000498619		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-intron	ENST00000534875	ENST00000296154		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
5UTR-5UTR	ENST00000543413	ENST00000490131		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
5UTR-5UTR	ENST00000543413	ENST00000498619		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
5UTR-intron	ENST00000543413	ENST00000296154		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000497202	ENST00000490131		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-5UTR	ENST00000497202	ENST00000498619		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
intron-intron	ENST00000497202	ENST00000296154		TCGA	RV	BRCA	TCGA-D8-A27V-01A	SUCLA2	chr13	48611742	-	CASR	chr3	121972795	+
5UTR-3CDS	ENST00000357395	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
Frame-shit	ENST00000358025	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
Frame-shit	ENST00000344113	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000341472	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000356081	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
Frame-shit	ENST00000554584	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000555002	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000394768	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000556725	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000553455	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000555022	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000554805	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000458046	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
intron-3CDS	ENST00000441438	ENST00000256343		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SYNE2	chr14	64434564	+	CATSPERB	chr14	92105594	-
5CDS-intron	ENST00000382491	ENST00000536776		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000382491	ENST00000490358		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000382491	ENST00000487113		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000382491	ENST00000479548		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000357345	ENST00000536776		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000357345	ENST00000490358		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000357345	ENST00000487113		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000357345	ENST00000479548		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000382499	ENST00000536776		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000382499	ENST00000490358		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000382499	ENST00000487113		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000382499	ENST00000479548		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000433931	ENST00000536776		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000433931	ENST00000490358		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000433931	ENST00000487113		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000433931	ENST00000479548		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000322229	ENST00000536776		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000322229	ENST00000490358		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-intron	ENST00000322229	ENST00000487113		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
5CDS-5UTR	ENST00000322229	ENST00000479548		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
intron-intron	ENST00000464778	ENST00000536776		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
intron-5UTR	ENST00000464778	ENST00000490358		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
intron-intron	ENST00000464778	ENST00000487113		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
intron-5UTR	ENST00000464778	ENST00000479548		TCGA	RV	BRCA	TCGA-E2-A158-01A	SYNJ1	chr21	34037223	-	C21orf62	chr21	34182964	-
Frame-shit	ENST00000394395	ENST00000407008		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000394395	ENST00000583517		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000394395	ENST00000582037		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
Frame-shit	ENST00000586023	ENST00000407008		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000586023	ENST00000583517		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000586023	ENST00000582037		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
Frame-shit	ENST00000225396	ENST00000407008		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000225396	ENST00000583517		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000225396	ENST00000582037		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
Frame-shit	ENST00000417170	ENST00000407008		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000417170	ENST00000583517		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000417170	ENST00000582037		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
intron-3CDS	ENST00000591992	ENST00000407008		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
intron-intron	ENST00000591992	ENST00000583517		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
intron-intron	ENST00000591992	ENST00000582037		TCGA	RV	BRCA	TCGA-AN-A049-01A	TADA2A	chr17	35787108	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000252996	ENST00000492698		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
5CDS-intron	ENST00000252996	ENST00000252999		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
5CDS-intron	ENST00000252996	ENST00000370692		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
5CDS-intron	ENST00000252996	ENST00000370677		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
intron-intron	ENST00000609045	ENST00000492698		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
intron-intron	ENST00000609045	ENST00000252999		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
intron-intron	ENST00000609045	ENST00000370692		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
intron-intron	ENST00000609045	ENST00000370677		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	LAMA5	chr20	60913206	-
Frame-shit	ENST00000424789	ENST00000397786		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	TANC2	chr17	61396451	+	MED13	chr17	60112969	-
5CDS-intron	ENST00000424789	ENST00000580896		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	TANC2	chr17	61396451	+	MED13	chr17	60112969	-
Frame-shit	ENST00000389520	ENST00000397786		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	TANC2	chr17	61396451	+	MED13	chr17	60112969	-
5CDS-intron	ENST00000389520	ENST00000580896		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	TANC2	chr17	61396451	+	MED13	chr17	60112969	-
Frame-shit	ENST00000261716	ENST00000580907		TCGA	RV	BRCA	TCGA-BH-A0DZ-01A	TAOK1	chr17	27857637	+	CCL2	chr17	32583241	+
Frame-shit	ENST00000261716	ENST00000225831		TCGA	RV	BRCA	TCGA-BH-A0DZ-01A	TAOK1	chr17	27857637	+	CCL2	chr17	32583241	+
Frame-shit	ENST00000536202	ENST00000580907		TCGA	RV	BRCA	TCGA-BH-A0DZ-01A	TAOK1	chr17	27857637	+	CCL2	chr17	32583241	+
Frame-shit	ENST00000536202	ENST00000225831		TCGA	RV	BRCA	TCGA-BH-A0DZ-01A	TAOK1	chr17	27857637	+	CCL2	chr17	32583241	+
intron-intron	ENST00000355235	ENST00000264818		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000355235	ENST00000524462		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000355235	ENST00000525621		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000355235	ENST00000529370		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000355235	ENST00000529422		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000356834	ENST00000264818		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000356834	ENST00000524462		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000356834	ENST00000525621		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000356834	ENST00000529370		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000356834	ENST00000529422		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000518085	ENST00000264818		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000518085	ENST00000524462		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000518085	ENST00000525621		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000518085	ENST00000529370		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000518085	ENST00000529422		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000519746	ENST00000264818		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000519746	ENST00000524462		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000519746	ENST00000525621		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000519746	ENST00000529370		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000519746	ENST00000529422		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000444477	ENST00000264818		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000444477	ENST00000524462		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000444477	ENST00000525621		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000444477	ENST00000529370		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
intron-intron	ENST00000444477	ENST00000529422		TCGA	RV	BRCA	TCGA-BH-A18V-06A	TBC1D9B	chr5	179289743	-	TYK2	chr19	10491352	-
Frame-shit	ENST00000366601	ENST00000337137		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000366601	ENST00000380995		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000366601	ENST00000407381		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000366601	ENST00000355704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000366601	ENST00000472791		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000366601	ENST00000406733		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
Frame-shit	ENST00000406207	ENST00000337137		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000406207	ENST00000380995		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000406207	ENST00000407381		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000406207	ENST00000355704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000406207	ENST00000472791		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000406207	ENST00000406733		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
Frame-shit	ENST00000543662	ENST00000337137		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000543662	ENST00000380995		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000543662	ENST00000407381		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000543662	ENST00000355704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000543662	ENST00000472791		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000543662	ENST00000406733		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
3UTR-3CDS	ENST00000472011	ENST00000337137		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
3UTR-intron	ENST00000472011	ENST00000380995		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
3UTR-intron	ENST00000472011	ENST00000407381		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
3UTR-intron	ENST00000472011	ENST00000355704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
3UTR-intron	ENST00000472011	ENST00000472791		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
3UTR-intron	ENST00000472011	ENST00000406733		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TBCE	chr1	235543464	+	TBC1D22A	chr22	47507404	+
5UTR-3CDS	ENST00000407597	ENST00000421587		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000407597	ENST00000318588		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000407597	ENST00000361962		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000407597	ENST00000378163		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000407597	ENST00000378158		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000407597	ENST00000378166		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000407597	ENST00000442742		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000407597	ENST00000472704		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000407597	ENST00000378154		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000421587		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000318588		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000361962		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000378163		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000378158		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000378166		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000424279	ENST00000442742		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000424279	ENST00000472704		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000424279	ENST00000378154		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000421587		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000318588		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000361962		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000378163		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000378158		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000378166		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000536365	ENST00000442742		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000536365	ENST00000472704		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000536365	ENST00000378154		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000421587		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000318588		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000361962		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000378163		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000378158		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000378166		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000380961	ENST00000442742		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000380961	ENST00000472704		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000380961	ENST00000378154		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000421587		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000318588		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000361962		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000378163		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000378158		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000378166		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-3CDS	ENST00000217964	ENST00000442742		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000217964	ENST00000472704		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
5UTR-intron	ENST00000217964	ENST00000378154		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000421587		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000318588		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000361962		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000378163		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000378158		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000378166		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-3CDS	ENST00000497555	ENST00000442742		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-intron	ENST00000497555	ENST00000472704		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
intron-intron	ENST00000497555	ENST00000378154		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TBL1X	chrX	9469889	+	CASK	chrX	41712480	-
In-frame	ENST00000435962	ENST00000267620		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000435962	ENST00000342058		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000435962	ENST00000556154		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000435962	ENST00000556961		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000340892	ENST00000267620		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000340892	ENST00000342058		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000340892	ENST00000556154		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000340892	ENST00000556961		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000360594	ENST00000267620		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000360594	ENST00000342058		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000360594	ENST00000556154		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000360594	ENST00000556961		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000556018	ENST00000267620		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000556018	ENST00000342058		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
In-frame	ENST00000556018	ENST00000556154		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000556018	ENST00000556961		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555302	ENST00000267620		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555302	ENST00000342058		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555302	ENST00000556154		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
intron-intron	ENST00000555302	ENST00000556961		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TC2N	chr14	92278656	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000389934	ENST00000392650		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
Frame-shit	ENST00000389934	ENST00000388726		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
5CDS-intron	ENST00000389934	ENST00000410094		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
Frame-shit	ENST00000349033	ENST00000392650		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
Frame-shit	ENST00000349033	ENST00000388726		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
5CDS-intron	ENST00000349033	ENST00000410094		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
Frame-shit	ENST00000240361	ENST00000392650		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
Frame-shit	ENST00000240361	ENST00000388726		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
5CDS-intron	ENST00000240361	ENST00000410094		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
intron-3CDS	ENST00000584699	ENST00000392650		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
intron-3CDS	ENST00000584699	ENST00000388726		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
intron-intron	ENST00000584699	ENST00000410094		TCGA	RV	BRCA	TCGA-A8-A07I-01A	TEX14	chr17	56661861	-	SDK2	chr17	71387677	-
Frame-shit	ENST00000261296	ENST00000358077		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
In-frame	ENST00000261296	ENST00000472284		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
In-frame	ENST00000261296	ENST00000469640		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
Frame-shit	ENST00000261296	ENST00000408954		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
In-frame	ENST00000261296	ENST00000491893		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
5CDS-intron	ENST00000261296	ENST00000466188		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-3CDS	ENST00000498294	ENST00000358077		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-3CDS	ENST00000498294	ENST00000472284		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-3CDS	ENST00000498294	ENST00000469640		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-3CDS	ENST00000498294	ENST00000408954		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-3CDS	ENST00000498294	ENST00000491893		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-intron	ENST00000498294	ENST00000466188		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TGDS	chr13	95248305	-	DAPK1	chr9	90321047	+
intron-3CDS	ENST00000432054	ENST00000273450		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000432054	ENST00000472186		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000432054	ENST00000452905		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000432054	ENST00000393434		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000432054	ENST00000393431		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000432054	ENST00000413612		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000432054	ENST00000455064		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
Frame-shit	ENST00000393238	ENST00000273450		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000393238	ENST00000472186		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000393238	ENST00000452905		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000393238	ENST00000393434		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000393238	ENST00000393431		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-intron	ENST00000393238	ENST00000413612		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000393238	ENST00000455064		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
In-frame	ENST00000426664	ENST00000273450		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000426664	ENST00000472186		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000426664	ENST00000452905		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000426664	ENST00000393434		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000426664	ENST00000393431		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-intron	ENST00000426664	ENST00000413612		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000426664	ENST00000455064		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-3CDS	ENST00000329333	ENST00000273450		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000329333	ENST00000472186		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000329333	ENST00000452905		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000329333	ENST00000393434		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000329333	ENST00000393431		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000329333	ENST00000413612		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000329333	ENST00000455064		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-3CDS	ENST00000515024	ENST00000273450		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000515024	ENST00000472186		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000515024	ENST00000452905		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000515024	ENST00000393434		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000515024	ENST00000393431		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000515024	ENST00000413612		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000515024	ENST00000455064		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	TMCC1	chr3	129546646	-	ALDH1L1	chr3	125879845	-
Frame-shit	ENST00000361906	ENST00000295704		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TMEM184B	chr22	38626675	-	RNF25	chr2	219533402	-
Frame-shit	ENST00000361684	ENST00000295704		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TMEM184B	chr22	38626675	-	RNF25	chr2	219533402	-
intron-3CDS	ENST00000504337	ENST00000295704		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TMEM184B	chr22	38626675	-	RNF25	chr2	219533402	-
Frame-shit	ENST00000266712	ENST00000308086		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMTC3	chr12	88570096	+	THAP2	chr12	72070469	+
5CDS-intron	ENST00000266712	ENST00000547843		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMTC3	chr12	88570096	+	THAP2	chr12	72070469	+
intron-3CDS	ENST00000269485	ENST00000256858		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TNFRSF11A	chr18	60036717	+	KIAA1468	chr18	59954584	+
intron-3CDS	ENST00000269485	ENST00000398130		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TNFRSF11A	chr18	60036717	+	KIAA1468	chr18	59954584	+
intron-intron	ENST00000269485	ENST00000592479		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TNFRSF11A	chr18	60036717	+	KIAA1468	chr18	59954584	+
In-frame	ENST00000586569	ENST00000256858		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TNFRSF11A	chr18	60036717	+	KIAA1468	chr18	59954584	+
In-frame	ENST00000586569	ENST00000398130		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TNFRSF11A	chr18	60036717	+	KIAA1468	chr18	59954584	+
5CDS-intron	ENST00000586569	ENST00000592479		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TNFRSF11A	chr18	60036717	+	KIAA1468	chr18	59954584	+
intron-5UTR	ENST00000447733	ENST00000444518		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
intron-intron	ENST00000447733	ENST00000466438		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
intron-5UTR	ENST00000447733	ENST00000216106		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-5UTR	ENST00000449058	ENST00000444518		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-intron	ENST00000449058	ENST00000466438		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-5UTR	ENST00000449058	ENST00000216106		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-5UTR	ENST00000425375	ENST00000444518		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-intron	ENST00000425375	ENST00000466438		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-5UTR	ENST00000425375	ENST00000216106		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-5UTR	ENST00000411850	ENST00000444518		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-intron	ENST00000411850	ENST00000466438		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5CDS-5UTR	ENST00000411850	ENST00000216106		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-5UTR	ENST00000436462	ENST00000444518		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-intron	ENST00000436462	ENST00000466438		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-5UTR	ENST00000436462	ENST00000216106		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-5UTR	ENST00000382034	ENST00000444518		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-intron	ENST00000382034	ENST00000466438		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-5UTR	ENST00000382034	ENST00000216106		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	TOM1	chr22	35695973	+	HMGXB4	chr22	35658316	+
5UTR-intron	ENST00000391878	ENST00000414423		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5UTR-intron	ENST00000391878	ENST00000295024		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5UTR-intron	ENST00000391878	ENST00000366852		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5UTR-intron	ENST00000391878	ENST00000479727		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5CDS-intron	ENST00000343537	ENST00000414423		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5CDS-intron	ENST00000343537	ENST00000295024		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5CDS-intron	ENST00000343537	ENST00000366852		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5CDS-intron	ENST00000343537	ENST00000479727		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000391879	ENST00000414423		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000391879	ENST00000295024		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000391879	ENST00000366852		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000391879	ENST00000479727		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000498843	ENST00000414423		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000498843	ENST00000295024		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000498843	ENST00000366852		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
intron-intron	ENST00000498843	ENST00000479727		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TP53BP2	chr1	224033356	-	WDR26	chr1	224623593	-
5UTR-3CDS	ENST00000340513	ENST00000376309		TCGA	RV	BRCA	TCGA-AN-A04A-01A	TPX2	chr20	30330450	+	DEFB123	chr20	30037832	+
5UTR-3CDS	ENST00000300403	ENST00000376309		TCGA	RV	BRCA	TCGA-AN-A04A-01A	TPX2	chr20	30330450	+	DEFB123	chr20	30037832	+
In-frame	ENST00000305798	ENST00000237596		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
5CDS-5UTR	ENST00000305798	ENST00000508588		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
5CDS-intron	ENST00000305798	ENST00000511337		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
5CDS-intron	ENST00000305798	ENST00000502363		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-3CDS	ENST00000505184	ENST00000237596		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-5UTR	ENST00000505184	ENST00000508588		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-intron	ENST00000505184	ENST00000511337		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-intron	ENST00000505184	ENST00000502363		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-3CDS	ENST00000509168	ENST00000237596		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-5UTR	ENST00000509168	ENST00000508588		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-intron	ENST00000509168	ENST00000511337		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
intron-intron	ENST00000509168	ENST00000502363		TCGA	RV	BRCA	TCGA-E9-A243-01A	TSPAN5	chr4	99579297	-	PKD2	chr4	88973143	+
Frame-shit	ENST00000216129	ENST00000360835		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
In-frame	ENST00000216129	ENST00000290460		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
5CDS-intron	ENST00000216129	ENST00000470433		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
intron-3CDS	ENST00000494035	ENST00000360835		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
intron-3CDS	ENST00000494035	ENST00000290460		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
intron-intron	ENST00000494035	ENST00000470433		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
intron-3CDS	ENST00000484118	ENST00000360835		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
intron-3CDS	ENST00000484118	ENST00000290460		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
intron-intron	ENST00000484118	ENST00000470433		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	TTLL12	chr22	43572326	-	SCUBE1	chr22	43634960	-
5UTR-3CDS	ENST00000477524	ENST00000310581		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000477524	ENST00000296820		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000477524	ENST00000334602		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000477524	ENST00000508104		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-intron	ENST00000477524	ENST00000522877		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000260505	ENST00000310581		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000260505	ENST00000296820		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000260505	ENST00000334602		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000260505	ENST00000508104		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5UTR-intron	ENST00000260505	ENST00000522877		TCGA	RV	BRCA	TCGA-C8-A131-01A	TTLL7	chr1	84464614	-	TERT	chr5	1282739	-
5CDS-5UTR	ENST00000279907	ENST00000473039		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-5UTR	ENST00000279907	ENST00000373624		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000279907	ENST00000542603		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000279907	ENST00000394219		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000279907	ENST00000373620		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000279907	ENST00000394215		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000279907	ENST00000373618		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000356828	ENST00000473039		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000356828	ENST00000373624		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000356828	ENST00000542603		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000356828	ENST00000394219		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000356828	ENST00000373620		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000356828	ENST00000394215		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000356828	ENST00000373618		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-5UTR	ENST00000545232	ENST00000473039		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-5UTR	ENST00000545232	ENST00000373624		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000545232	ENST00000542603		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000545232	ENST00000394219		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000545232	ENST00000373620		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000545232	ENST00000394215		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
5CDS-intron	ENST00000545232	ENST00000373618		TCGA	RV	BRCA	TCGA-A2-A04T-01A	UHRF1BP1L	chr12	100441308	-	DENND1A	chr9	126554909	-
In-frame	ENST00000219689	ENST00000571589		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
In-frame	ENST00000219689	ENST00000574045		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
In-frame	ENST00000219689	ENST00000318282		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
5CDS-intron	ENST00000219689	ENST00000572567		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
5CDS-intron	ENST00000219689	ENST00000341243		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
5CDS-intron	ENST00000219689	ENST00000575537		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
5CDS-intron	ENST00000219689	ENST00000573051		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-3CDS	ENST00000567975	ENST00000571589		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-3CDS	ENST00000567975	ENST00000574045		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-3CDS	ENST00000567975	ENST00000318282		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-intron	ENST00000567975	ENST00000572567		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-intron	ENST00000567975	ENST00000341243		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-intron	ENST00000567975	ENST00000575537		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
intron-intron	ENST00000567975	ENST00000573051		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	USP31	chr16	23159959	-	MKL2	chr16	14351958	+
5CDS-3UTR	ENST00000398571	ENST00000410075		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
5CDS-3UTR	ENST00000398571	ENST00000377802		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
5CDS-3UTR	ENST00000398571	ENST00000355812		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
5CDS-3UTR	ENST00000398571	ENST00000409544		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
5CDS-3UTR	ENST00000398571	ENST00000264447		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
5CDS-intron	ENST00000398571	ENST00000409407		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
intron-3UTR	ENST00000472689	ENST00000410075		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
intron-3UTR	ENST00000472689	ENST00000377802		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
intron-3UTR	ENST00000472689	ENST00000355812		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
intron-3UTR	ENST00000472689	ENST00000409544		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
intron-3UTR	ENST00000472689	ENST00000264447		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
intron-intron	ENST00000472689	ENST00000409407		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	USP34	chr2	61647881	-	ZNF638	chr2	71582849	+
5UTR-3CDS	ENST00000530267	ENST00000299563		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	USP35	chr11	77900203	+	RNF169	chr11	74500671	+
3UTR-3CDS	ENST00000530535	ENST00000299563		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	USP35	chr11	77900203	+	RNF169	chr11	74500671	+
5UTR-3CDS	ENST00000529308	ENST00000299563		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	USP35	chr11	77900203	+	RNF169	chr11	74500671	+
intron-3CDS	ENST00000441408	ENST00000299563		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	USP35	chr11	77900203	+	RNF169	chr11	74500671	+
intron-3CDS	ENST00000526425	ENST00000299563		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	USP35	chr11	77900203	+	RNF169	chr11	74500671	+
Frame-shit	ENST00000328823	ENST00000401548		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
5CDS-intron	ENST00000328823	ENST00000540833		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
5CDS-intron	ENST00000328823	ENST00000400107		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
5CDS-5UTR	ENST00000328823	ENST00000300398		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
5CDS-5UTR	ENST00000328823	ENST00000540880		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
5CDS-intron	ENST00000328823	ENST00000476893		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
3UTR-3CDS	ENST00000461730	ENST00000401548		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
3UTR-intron	ENST00000461730	ENST00000540833		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
3UTR-intron	ENST00000461730	ENST00000400107		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
3UTR-5UTR	ENST00000461730	ENST00000300398		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
3UTR-5UTR	ENST00000461730	ENST00000540880		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
3UTR-intron	ENST00000461730	ENST00000476893		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
intron-3CDS	ENST00000543212	ENST00000401548		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
intron-intron	ENST00000543212	ENST00000540833		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
intron-intron	ENST00000543212	ENST00000400107		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
intron-5UTR	ENST00000543212	ENST00000300398		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
intron-5UTR	ENST00000543212	ENST00000540880		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
intron-intron	ENST00000543212	ENST00000476893		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	WBP2NL	chr22	42394884	+	MEI1	chr22	42172106	+
Frame-shit	ENST00000265107	ENST00000298298		TCGA	RV	BRCA	TCGA-A8-A09X-01A	WDR70	chr5	37396672	+	C10orf25	chr10	45495864	-
Frame-shit	ENST00000504564	ENST00000298298		TCGA	RV	BRCA	TCGA-A8-A09X-01A	WDR70	chr5	37396672	+	C10orf25	chr10	45495864	-
intron-3CDS	ENST00000510699	ENST00000298298		TCGA	RV	BRCA	TCGA-A8-A09X-01A	WDR70	chr5	37396672	+	C10orf25	chr10	45495864	-
Frame-shit	ENST00000371026	ENST00000370952		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	WDR78	chr1	67390345	-	LRRC40	chr1	70654956	-
5UTR-3CDS	ENST00000431318	ENST00000370952		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	WDR78	chr1	67390345	-	LRRC40	chr1	70654956	-
Frame-shit	ENST00000371023	ENST00000370952		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	WDR78	chr1	67390345	-	LRRC40	chr1	70654956	-
Frame-shit	ENST00000371022	ENST00000370952		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	WDR78	chr1	67390345	-	LRRC40	chr1	70654956	-
intron-3CDS	ENST00000488333	ENST00000370952		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	WDR78	chr1	67390345	-	LRRC40	chr1	70654956	-
intron-3CDS	ENST00000493572	ENST00000370952		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	WDR78	chr1	67390345	-	LRRC40	chr1	70654956	-
In-frame	ENST00000367590	ENST00000367669		TCGA	RV	BRCA	TCGA-A8-A07W-01A	XPR1	chr1	180843078	+	RFWD2	chr1	176153828	-
In-frame	ENST00000367590	ENST00000308769		TCGA	RV	BRCA	TCGA-A8-A07W-01A	XPR1	chr1	180843078	+	RFWD2	chr1	176153828	-
In-frame	ENST00000367589	ENST00000367669		TCGA	RV	BRCA	TCGA-A8-A07W-01A	XPR1	chr1	180843078	+	RFWD2	chr1	176153828	-
In-frame	ENST00000367589	ENST00000308769		TCGA	RV	BRCA	TCGA-A8-A07W-01A	XPR1	chr1	180843078	+	RFWD2	chr1	176153828	-
intron-3CDS	ENST00000467345	ENST00000367669		TCGA	RV	BRCA	TCGA-A8-A07W-01A	XPR1	chr1	180843078	+	RFWD2	chr1	176153828	-
intron-3CDS	ENST00000467345	ENST00000308769		TCGA	RV	BRCA	TCGA-A8-A07W-01A	XPR1	chr1	180843078	+	RFWD2	chr1	176153828	-
In-frame	ENST00000378743	ENST00000424107		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
In-frame	ENST00000378743	ENST00000558583		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
5CDS-intron	ENST00000378743	ENST00000558318		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
5CDS-intron	ENST00000378743	ENST00000423335		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
5CDS-intron	ENST00000378743	ENST00000482916		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000548100	ENST00000424107		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000548100	ENST00000558583		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000548100	ENST00000558318		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000548100	ENST00000423335		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000548100	ENST00000482916		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000552037	ENST00000424107		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000552037	ENST00000558583		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000552037	ENST00000558318		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000552037	ENST00000423335		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000552037	ENST00000482916		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000549407	ENST00000424107		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000549407	ENST00000558583		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000549407	ENST00000558318		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000549407	ENST00000423335		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
intron-intron	ENST00000549407	ENST00000482916		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZFC3H1	chr12	72036216	-	SHISA9	chr16	13297251	+
5UTR-5UTR	ENST00000589018	ENST00000291825		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000589018	ENST00000324001		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-intron	ENST00000589018	ENST00000599513		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000351218	ENST00000291825		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000351218	ENST00000324001		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-intron	ENST00000351218	ENST00000599513		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000392144	ENST00000291825		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000392144	ENST00000324001		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-intron	ENST00000392144	ENST00000599513		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000514101	ENST00000291825		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000514101	ENST00000324001		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-intron	ENST00000514101	ENST00000599513		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000586732	ENST00000291825		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-5UTR	ENST00000586732	ENST00000324001		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5UTR-intron	ENST00000586732	ENST00000599513		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ZFP30	chr19	38145613	-	PRX	chr19	40914290	-
5CDS-5UTR	ENST00000265069	ENST00000502553		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
5CDS-5UTR	ENST00000265069	ENST00000265112		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
5CDS-5UTR	ENST00000265069	ENST00000541634		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
5CDS-5UTR	ENST00000265069	ENST00000455217		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
5CDS-5UTR	ENST00000265069	ENST00000414361		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
5CDS-intron	ENST00000265069	ENST00000509410		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
intron-5UTR	ENST00000510369	ENST00000502553		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
intron-5UTR	ENST00000510369	ENST00000265112		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
intron-5UTR	ENST00000510369	ENST00000541634		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
intron-5UTR	ENST00000510369	ENST00000455217		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
intron-5UTR	ENST00000510369	ENST00000414361		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
intron-intron	ENST00000510369	ENST00000509410		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ZFR	chr5	32444335	-	TARS	chr5	33441152	+
5CDS-3UTR	ENST00000561648	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000561648	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000563137	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000563137	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000562871	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000562871	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000262383	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000262383	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
intron-3UTR	ENST00000535559	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
intron-3UTR	ENST00000535559	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
intron-3UTR	ENST00000567169	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
intron-3UTR	ENST00000567169	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000562520	ENST00000526417		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
5CDS-3UTR	ENST00000562520	ENST00000300589		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	ZNF423	chr16	49764682	-	NOD2	chr16	50733399	+
Frame-shit	ENST00000483233	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000483233	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000483233	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000315877	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000315877	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000315877	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
intron-3CDS	ENST00000487005	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
intron-3CDS	ENST00000487005	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
intron-3CDS	ENST00000487005	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000395008	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000395008	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000395008	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000361143	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000361143	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000361143	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000461108	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000461108	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000461108	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000525795	ENST00000296484		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000525795	ENST00000394970		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
Frame-shit	ENST00000525795	ENST00000474012		TCGA	RV	BRCA	TCGA-BH-A1F0-01A	ABHD14B	chr3	52005476	-	POC1A	chr3	52110001	-
In-frame	ENST00000504830	ENST00000382065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
In-frame	ENST00000504830	ENST00000231338		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000504830	ENST00000513065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
In-frame	ENST00000352040	ENST00000382065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
In-frame	ENST00000352040	ENST00000231338		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000352040	ENST00000513065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
intron-3CDS	ENST00000504582	ENST00000382065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
intron-3CDS	ENST00000504582	ENST00000231338		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
intron-intron	ENST00000504582	ENST00000513065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
In-frame	ENST00000515401	ENST00000382065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
In-frame	ENST00000515401	ENST00000231338		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000515401	ENST00000513065		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ADAMTS12	chr5	33891835	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000539909	ENST00000361320		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000539909	ENST00000485868		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
Frame-shit	ENST00000286621	ENST00000361320		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000286621	ENST00000485868		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
Frame-shit	ENST00000372734	ENST00000361320		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000372734	ENST00000485868		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
Frame-shit	ENST00000541550	ENST00000361320		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000541550	ENST00000485868		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
intron-3CDS	ENST00000467840	ENST00000361320		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
intron-3UTR	ENST00000467840	ENST00000485868		TCGA	RV	BRCA	TCGA-BH-A18U-01A	ADK	chr10	76430027	+	LRRTM3	chr10	68857345	+
Frame-shit	ENST00000409236	ENST00000284629		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	AFF3	chr2	100453939	-	ASZ1	chr7	117066989	-
Frame-shit	ENST00000356421	ENST00000284629		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	AFF3	chr2	100453939	-	ASZ1	chr7	117066989	-
Frame-shit	ENST00000317233	ENST00000284629		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	AFF3	chr2	100453939	-	ASZ1	chr7	117066989	-
Frame-shit	ENST00000409579	ENST00000284629		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	AFF3	chr2	100453939	-	ASZ1	chr7	117066989	-
intron-3CDS	ENST00000483600	ENST00000284629		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	AFF3	chr2	100453939	-	ASZ1	chr7	117066989	-
intron-5UTR	ENST00000463381	ENST00000307194		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP1	chr7	150416130	+
5CDS-5UTR	ENST00000473312	ENST00000307194		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP1	chr7	150416130	+
5CDS-5UTR	ENST00000479901	ENST00000307194		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP1	chr7	150416130	+
5CDS-5UTR	ENST00000397238	ENST00000307194		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP1	chr7	150416130	+
intron-5UTR	ENST00000476375	ENST00000307194		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP1	chr7	150416130	+
intron-5UTR	ENST00000335367	ENST00000307194		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP1	chr7	150416130	+
In-frame	ENST00000379370	ENST00000330579		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000379370	ENST00000535343		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000379370	ENST00000538784		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
3UTR-3CDS	ENST00000477585	ENST00000330579		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
3UTR-intron	ENST00000477585	ENST00000535343		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
3UTR-5UTR	ENST00000477585	ENST00000538784		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000257787	ENST00000341048		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
Frame-shit	ENST00000257787	ENST00000504958		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000257787	ENST00000505970		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5CDS-5UTR	ENST00000257787	ENST00000513241		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000257787	ENST00000434982		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5UTR-3CDS	ENST00000420494	ENST00000341048		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5UTR-3CDS	ENST00000420494	ENST00000504958		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5UTR-intron	ENST00000420494	ENST00000505970		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5UTR-5UTR	ENST00000420494	ENST00000513241		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
5UTR-intron	ENST00000420494	ENST00000434982		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	AKIRIN2	chr6	88411168	-	ANKRD55	chr5	55479461	-
intron-3CDS	ENST00000298834	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000426438	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000314845	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000533727	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000534300	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000458649	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000528950	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000529963	ENST00000326737		TCGA	RV	BRCA	TCGA-A8-A09D-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000359299	ENST00000585682		TCGA	RV	BRCA	TCGA-BH-A1FL-01A	ANXA10	chr4	169049316	+	FAM198B	chr4	159052164	-
Frame-shit	ENST00000359299	ENST00000296530		TCGA	RV	BRCA	TCGA-BH-A1FL-01A	ANXA10	chr4	169049316	+	FAM198B	chr4	159052164	-
Frame-shit	ENST00000359299	ENST00000393807		TCGA	RV	BRCA	TCGA-BH-A1FL-01A	ANXA10	chr4	169049316	+	FAM198B	chr4	159052164	-
5CDS-5UTR	ENST00000359299	ENST00000589306		TCGA	RV	BRCA	TCGA-BH-A1FL-01A	ANXA10	chr4	169049316	+	FAM198B	chr4	159052164	-
5CDS-intron	ENST00000359299	ENST00000592057		TCGA	RV	BRCA	TCGA-BH-A1FL-01A	ANXA10	chr4	169049316	+	FAM198B	chr4	159052164	-
5CDS-3UTR	ENST00000278359	ENST00000491890		TCGA	RV	BRCA	TCGA-E2-A15D-01A	APIP	chr11	34937775	-	C10orf35	chr10	71391236	+
5CDS-5UTR	ENST00000278359	ENST00000373279		TCGA	RV	BRCA	TCGA-E2-A15D-01A	APIP	chr11	34937775	-	C10orf35	chr10	71391236	+
5CDS-3UTR	ENST00000395787	ENST00000491890		TCGA	RV	BRCA	TCGA-E2-A15D-01A	APIP	chr11	34937775	-	C10orf35	chr10	71391236	+
5CDS-5UTR	ENST00000395787	ENST00000373279		TCGA	RV	BRCA	TCGA-E2-A15D-01A	APIP	chr11	34937775	-	C10orf35	chr10	71391236	+
5UTR-3UTR	ENST00000527830	ENST00000491890		TCGA	RV	BRCA	TCGA-E2-A15D-01A	APIP	chr11	34937775	-	C10orf35	chr10	71391236	+
5UTR-5UTR	ENST00000527830	ENST00000373279		TCGA	RV	BRCA	TCGA-E2-A15D-01A	APIP	chr11	34937775	-	C10orf35	chr10	71391236	+
Frame-shit	ENST00000083182	ENST00000372868		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
Frame-shit	ENST00000083182	ENST00000372865		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
Frame-shit	ENST00000083182	ENST00000190983		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
5CDS-intron	ENST00000083182	ENST00000471629		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
intron-3CDS	ENST00000592995	ENST00000372868		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
intron-3CDS	ENST00000592995	ENST00000372865		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
intron-3CDS	ENST00000592995	ENST00000190983		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
intron-intron	ENST00000592995	ENST00000471629		TCGA	RV	BRCA	TCGA-AC-A62V-01A	APPBP2	chr17	58556509	-	WISP2	chr20	43348538	+
5UTR-3CDS	ENST00000502271	ENST00000395246		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-intron	ENST00000502271	ENST00000504701		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-5UTR	ENST00000502271	ENST00000503291		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-5UTR	ENST00000502271	ENST00000360515		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-5UTR	ENST00000502271	ENST00000505065		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
In-frame	ENST00000504924	ENST00000395246		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000504924	ENST00000504701		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000504924	ENST00000503291		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000504924	ENST00000360515		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000504924	ENST00000505065		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-3CDS	ENST00000510591	ENST00000395246		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-intron	ENST00000510591	ENST00000504701		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-5UTR	ENST00000510591	ENST00000503291		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-5UTR	ENST00000510591	ENST00000360515		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5UTR-5UTR	ENST00000510591	ENST00000505065		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
In-frame	ENST00000507646	ENST00000395246		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000507646	ENST00000504701		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000507646	ENST00000503291		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000507646	ENST00000360515		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000507646	ENST00000505065		TCGA	RV	BRCA	TCGA-C8-A134-01A	ARL15	chr5	53409032	-	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000369162	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000369162	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000369162	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000369162	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000369162	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000369162	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000369162	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-intron	ENST00000522650	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
intron-intron	ENST00000369143	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102192474	+
5CDS-5UTR	ENST00000368346	ENST00000368655		TCGA	RV	BRCA	TCGA-A8-A090-01A	ASH1L	chr1	155490891	-	GATAD2B	chr1	153800824	-
5CDS-5UTR	ENST00000392403	ENST00000368655		TCGA	RV	BRCA	TCGA-A8-A090-01A	ASH1L	chr1	155490891	-	GATAD2B	chr1	153800824	-
5CDS-5UTR	ENST00000548830	ENST00000368655		TCGA	RV	BRCA	TCGA-A8-A090-01A	ASH1L	chr1	155490891	-	GATAD2B	chr1	153800824	-
5CDS-intron	ENST00000348959	ENST00000393042		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000348959	ENST00000420861		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000348959	ENST00000342502		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000348959	ENST00000299157		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000261173	ENST00000393042		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000261173	ENST00000420861		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000261173	ENST00000342502		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000261173	ENST00000299157		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000359142	ENST00000393042		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000359142	ENST00000420861		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000359142	ENST00000342502		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000359142	ENST00000299157		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000428670	ENST00000393042		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000428670	ENST00000420861		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000428670	ENST00000342502		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000428670	ENST00000299157		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000393164	ENST00000393042		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000393164	ENST00000420861		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000393164	ENST00000342502		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000393164	ENST00000299157		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	ATP2B1	chr12	90024282	-	IKBIP	chr12	99028191	-
5CDS-intron	ENST00000262030	ENST00000360359		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000262030	ENST00000535627		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000262030	ENST00000470698		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552919	ENST00000360359		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552919	ENST00000535627		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552919	ENST00000470698		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000550162	ENST00000360359		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000550162	ENST00000535627		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000550162	ENST00000470698		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ATP5B	chr12	57031959	-	ANKS1A	chr6	34977682	+
5CDS-5UTR	ENST00000266383	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
5CDS-5UTR	ENST00000266383	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
5CDS-3UTR	ENST00000266383	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
5CDS-3UTR	ENST00000266383	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
5CDS-5UTR	ENST00000266383	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
intron-5UTR	ENST00000544638	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
intron-5UTR	ENST00000544638	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
intron-3UTR	ENST00000544638	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
intron-3UTR	ENST00000544638	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
intron-5UTR	ENST00000544638	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	520913	+
3UTR-5UTR	ENST00000521282	ENST00000448464		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
3UTR-5UTR	ENST00000521282	ENST00000342697		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
3UTR-intron	ENST00000521282	ENST00000378776		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
5CDS-5UTR	ENST00000432471	ENST00000448464		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
5CDS-5UTR	ENST00000432471	ENST00000342697		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
5CDS-intron	ENST00000432471	ENST00000378776		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
5CDS-5UTR	ENST00000287322	ENST00000448464		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
5CDS-5UTR	ENST00000287322	ENST00000342697		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
5CDS-intron	ENST00000287322	ENST00000378776		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	BAG4	chr8	38034657	+	TP53INP1	chr8	95953319	-
In-frame	ENST00000260502	ENST00000315489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
In-frame	ENST00000260502	ENST00000382696		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
Frame-shit	ENST00000370244	ENST00000315489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
Frame-shit	ENST00000370244	ENST00000382696		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
Frame-shit	ENST00000370243	ENST00000315489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
Frame-shit	ENST00000370243	ENST00000382696		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
intron-3CDS	ENST00000370247	ENST00000315489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
intron-3CDS	ENST00000370247	ENST00000382696		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
intron-3CDS	ENST00000539242	ENST00000315489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
intron-3CDS	ENST00000539242	ENST00000382696		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
intron-3CDS	ENST00000466632	ENST00000315489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
intron-3CDS	ENST00000466632	ENST00000382696		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	BCAR3	chr1	94107860	-	ODF3L2	chr19	467762	-
In-frame	ENST00000589222	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000589222	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000589222	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000407086	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000407086	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000407086	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000390652	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000390652	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000390652	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000408905	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000408905	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000408905	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000588462	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000588462	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000588462	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000585744	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000585744	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000585744	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000588874	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000588874	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
5CDS-intron	ENST00000588874	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
intron-3CDS	ENST00000585812	ENST00000259008		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
intron-3CDS	ENST00000585812	ENST00000577598		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
intron-intron	ENST00000585812	ENST00000583837		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BCAS3	chr17	59024713	+	BRIP1	chr17	59878835	-
In-frame	ENST00000589222	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000589222	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000589222	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000589222	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000589222	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000589222	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000589222	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000407086	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000407086	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000407086	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000407086	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000407086	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000407086	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000407086	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000390652	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000390652	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000390652	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000390652	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000390652	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000390652	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000390652	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000408905	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000408905	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000408905	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000408905	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000408905	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000408905	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000408905	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588462	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588462	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588462	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588462	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588462	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588462	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000588462	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000585744	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000585744	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000585744	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000585744	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000585744	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000585744	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000585744	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588874	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588874	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588874	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588874	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588874	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000588874	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
5CDS-5UTR	ENST00000588874	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-3CDS	ENST00000585812	ENST00000413795		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-3CDS	ENST00000585812	ENST00000369138		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-3CDS	ENST00000585812	ENST00000421544		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-3CDS	ENST00000585812	ENST00000358361		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-3CDS	ENST00000585812	ENST00000318991		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-3CDS	ENST00000585812	ENST00000369137		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
intron-5UTR	ENST00000585812	ENST00000369134		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	GRIK2	chr6	102069824	+
In-frame	ENST00000589222	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000589222	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000407086	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000407086	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000390652	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000390652	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000408905	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000408905	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000588462	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000588462	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
intron-3CDS	ENST00000585744	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
intron-3CDS	ENST00000585744	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
intron-3CDS	ENST00000588874	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
intron-3CDS	ENST00000588874	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
intron-3CDS	ENST00000585812	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
intron-3CDS	ENST00000585812	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	58952099	+	TANC2	chr17	61271352	+
In-frame	ENST00000333229	ENST00000398457		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000333229	ENST00000462050		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000333229	ENST00000347800		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000333229	ENST00000398449		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000333229	ENST00000361802		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000333229	ENST00000343687		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000333229	ENST00000398437		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000333229	ENST00000340588		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
In-frame	ENST00000342449	ENST00000398457		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000342449	ENST00000462050		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000342449	ENST00000347800		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000342449	ENST00000398449		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000342449	ENST00000361802		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000342449	ENST00000343687		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000342449	ENST00000398437		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000342449	ENST00000340588		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
In-frame	ENST00000380800	ENST00000398457		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380800	ENST00000462050		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380800	ENST00000347800		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380800	ENST00000398449		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380800	ENST00000361802		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380800	ENST00000343687		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000380800	ENST00000398437		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000380800	ENST00000340588		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3CDS	ENST00000341322	ENST00000398457		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000341322	ENST00000462050		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000341322	ENST00000347800		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000341322	ENST00000398449		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000341322	ENST00000361802		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000341322	ENST00000343687		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-intron	ENST00000341322	ENST00000398437		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-intron	ENST00000341322	ENST00000340588		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3CDS	ENST00000470108	ENST00000398457		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000470108	ENST00000462050		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000470108	ENST00000347800		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000470108	ENST00000398449		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000470108	ENST00000361802		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000470108	ENST00000343687		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-intron	ENST00000470108	ENST00000398437		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
intron-intron	ENST00000470108	ENST00000340588		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	BRWD1	chr21	40665737	-	ABCG1	chr21	43645781	+
5CDS-5UTR	ENST00000314100	ENST00000308448		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000314100	ENST00000328142		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000314100	ENST00000400215		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000314100	ENST00000541004		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000314100	ENST00000495903		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000481247	ENST00000308448		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000481247	ENST00000328142		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000481247	ENST00000400215		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000481247	ENST00000541004		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000481247	ENST00000495903		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000419706	ENST00000308448		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000419706	ENST00000328142		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000419706	ENST00000400215		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000419706	ENST00000541004		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000419706	ENST00000495903		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000408958	ENST00000308448		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000408958	ENST00000328142		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000408958	ENST00000400215		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000408958	ENST00000541004		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000408958	ENST00000495903		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000403056	ENST00000308448		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000403056	ENST00000328142		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000403056	ENST00000400215		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000403056	ENST00000541004		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000403056	ENST00000495903		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	BTBD9	chr6	38545376	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000287598	ENST00000559624		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000287598	ENST00000382727		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000287598	ENST00000263791		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000287598	ENST00000560648		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000287598	ENST00000559311		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000412359	ENST00000559624		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000412359	ENST00000382727		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000412359	ENST00000263791		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000412359	ENST00000560648		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
5CDS-intron	ENST00000412359	ENST00000559311		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
intron-intron	ENST00000560120	ENST00000559624		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
intron-intron	ENST00000560120	ENST00000382727		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
intron-intron	ENST00000560120	ENST00000263791		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
intron-intron	ENST00000560120	ENST00000560648		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
intron-intron	ENST00000560120	ENST00000559311		TCGA	RV	BRCA	TCGA-AO-A128-01A	BUB1B	chr15	40468874	+	EIF2AK4	chr15	40301815	+
Frame-shit	ENST00000378618	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000378618	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000378618	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000378618	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-3CDS	ENST00000536126	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-3CDS	ENST00000536126	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-intron	ENST00000536126	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-intron	ENST00000536126	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000278460	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000278460	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000278460	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000278460	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000395460	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000395460	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000395460	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000395460	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000378615	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
Frame-shit	ENST00000378615	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000378615	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000378615	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-3CDS	ENST00000543718	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-3CDS	ENST00000543718	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-intron	ENST00000543718	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5UTR-intron	ENST00000543718	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
intron-3CDS	ENST00000527268	ENST00000328257		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
intron-3CDS	ENST00000527268	ENST00000398427		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
intron-intron	ENST00000527268	ENST00000542710		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
intron-intron	ENST00000527268	ENST00000543525		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	C11orf49	chr11	46958402	+	PPME1	chr11	73941290	+
5CDS-intron	ENST00000438132	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000438132	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000542263	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000417362	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
5CDS-intron	ENST00000251143	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000543152	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000448695	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-intron	ENST00000544275	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000563675		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000541464		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000381414		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000396229		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000542583		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000219821		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000561503		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
3UTR-intron	ENST00000538853	ENST00000564959		TCGA	RV	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19505584	+
intron-3CDS	ENST00000366663	ENST00000389617		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	C1orf198	chr1	231004558	-	GXYLT2	chr3	72957518	+
5UTR-3CDS	ENST00000470540	ENST00000389617		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	C1orf198	chr1	231004558	-	GXYLT2	chr3	72957518	+
5UTR-3CDS	ENST00000427697	ENST00000389617		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	C1orf198	chr1	231004558	-	GXYLT2	chr3	72957518	+
intron-3CDS	ENST00000523410	ENST00000389617		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	C1orf198	chr1	231004558	-	GXYLT2	chr3	72957518	+
Frame-shit	ENST00000252032	ENST00000587331		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	C20orf194	chr20	3274785	-	CEACAM16	chr19	45208860	+
Frame-shit	ENST00000252032	ENST00000405314		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	C20orf194	chr20	3274785	-	CEACAM16	chr19	45208860	+
Frame-shit	ENST00000453730	ENST00000587331		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	C20orf194	chr20	3274785	-	CEACAM16	chr19	45208860	+
Frame-shit	ENST00000453730	ENST00000405314		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	C20orf194	chr20	3274785	-	CEACAM16	chr19	45208860	+
intron-3CDS	ENST00000498079	ENST00000587331		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	C20orf194	chr20	3274785	-	CEACAM16	chr19	45208860	+
intron-3CDS	ENST00000498079	ENST00000405314		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	C20orf194	chr20	3274785	-	CEACAM16	chr19	45208860	+
5CDS-5UTR	ENST00000335012	ENST00000433971		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	C3orf70	chr3	184870416	-	TPRG1	chr3	188844846	+
5CDS-intron	ENST00000335012	ENST00000345063		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	C3orf70	chr3	184870416	-	TPRG1	chr3	188844846	+
5CDS-intron	ENST00000335012	ENST00000488841		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	C3orf70	chr3	184870416	-	TPRG1	chr3	188844846	+
5CDS-5UTR	ENST00000277198	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-intron	ENST00000277198	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-intron	ENST00000277198	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-5UTR	ENST00000297979	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-intron	ENST00000297979	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-intron	ENST00000297979	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-5UTR	ENST00000375315	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-intron	ENST00000375315	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
5CDS-intron	ENST00000375315	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-5UTR	ENST00000395357	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000395357	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000395357	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-5UTR	ENST00000425634	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000425634	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000425634	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-5UTR	ENST00000433691	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000433691	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000433691	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-5UTR	ENST00000473778	ENST00000375360		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000473778	ENST00000288976		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-intron	ENST00000473778	ENST00000467049		TCGA	RV	BRCA	TCGA-C8-A12L-01A	C9orf3	chr9	97522862	+	PTPDC1	chr9	96827016	+
intron-3CDS	ENST00000400473	ENST00000327155		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000400473	ENST00000399722		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000400473	ENST00000399725		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000400473	ENST00000360790		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-intron	ENST00000400473	ENST00000581687		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000327155		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000399722		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000399725		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000360790		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
5CDS-intron	ENST00000256925	ENST00000581687		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000327155		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000399722		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000399725		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000360790		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-intron	ENST00000585061	ENST00000581687		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000420687	ENST00000327155		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000420687	ENST00000399722		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000420687	ENST00000399725		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000420687	ENST00000360790		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-intron	ENST00000420687	ENST00000581687		TCGA	RV	BRCA	TCGA-A8-A08R-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20548769	+
intron-intron	ENST00000592864	ENST00000597563		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000592864	ENST00000426973		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000592864	ENST00000356109		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000592864	ENST00000355684		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000360228	ENST00000597563		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000360228	ENST00000426973		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000360228	ENST00000356109		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000360228	ENST00000355684		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000573710	ENST00000597563		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000573710	ENST00000426973		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000573710	ENST00000356109		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
5CDS-intron	ENST00000573710	ENST00000355684		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000574822	ENST00000597563		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000574822	ENST00000426973		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000574822	ENST00000356109		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
intron-intron	ENST00000574822	ENST00000355684		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	CACNA1A	chr19	13394081	-	ZNF44	chr19	12359493	-
In-frame	ENST00000350061	ENST00000394729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
In-frame	ENST00000350061	ENST00000330452		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
5CDS-intron	ENST00000350061	ENST00000477794		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
In-frame	ENST00000288139	ENST00000394729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
In-frame	ENST00000288139	ENST00000330452		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
5CDS-intron	ENST00000288139	ENST00000477794		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
In-frame	ENST00000422281	ENST00000394729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
In-frame	ENST00000422281	ENST00000330452		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
5CDS-intron	ENST00000422281	ENST00000477794		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-3CDS	ENST00000498251	ENST00000394729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-3CDS	ENST00000498251	ENST00000330452		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-intron	ENST00000498251	ENST00000477794		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-3CDS	ENST00000540742	ENST00000394729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-3CDS	ENST00000540742	ENST00000330452		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-intron	ENST00000540742	ENST00000477794		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-3CDS	ENST00000544977	ENST00000394729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-3CDS	ENST00000544977	ENST00000330452		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
intron-intron	ENST00000544977	ENST00000477794		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	CACNA1D	chr3	53535747	+	PRKCD	chr3	53217468	+
5CDS-5UTR	ENST00000421587	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000421587	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000421587	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000421587	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000318588	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000318588	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000318588	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000318588	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000361962	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000361962	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000361962	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000361962	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378163	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378163	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378163	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378163	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378158	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378158	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378158	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378158	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378166	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378166	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378166	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378166	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000442742	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000442742	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000442742	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000442742	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
intron-5UTR	ENST00000472704	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
intron-5UTR	ENST00000472704	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
intron-3UTR	ENST00000472704	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
intron-3UTR	ENST00000472704	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378154	ENST00000357410		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000378154	ENST00000327619		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378154	ENST00000497428		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000378154	ENST00000317304		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CASK	chrX	41598637	-	EYA2	chr20	45618640	+
Frame-shit	ENST00000412964	ENST00000340465		TCGA	RV	BRCA	TCGA-C8-A12U-01A	CCDC138	chr2	109432561	+	GFRAL	chr6	55263978	+
Frame-shit	ENST00000295124	ENST00000340465		TCGA	RV	BRCA	TCGA-C8-A12U-01A	CCDC138	chr2	109432561	+	GFRAL	chr6	55263978	+
intron-3CDS	ENST00000470608	ENST00000340465		TCGA	RV	BRCA	TCGA-C8-A12U-01A	CCDC138	chr2	109432561	+	GFRAL	chr6	55263978	+
Frame-shit	ENST00000504487	ENST00000295454		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5CDS-5UTR	ENST00000504487	ENST00000538619		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5CDS-3UTR	ENST00000504487	ENST00000509366		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5UTR-3CDS	ENST00000428116	ENST00000295454		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5UTR-5UTR	ENST00000428116	ENST00000538619		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5UTR-3UTR	ENST00000428116	ENST00000509366		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-3CDS	ENST00000389609	ENST00000295454		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-5UTR	ENST00000389609	ENST00000538619		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-3UTR	ENST00000389609	ENST00000509366		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
Frame-shit	ENST00000502801	ENST00000295454		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5CDS-5UTR	ENST00000502801	ENST00000538619		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
5CDS-3UTR	ENST00000502801	ENST00000509366		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-3CDS	ENST00000508236	ENST00000295454		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-5UTR	ENST00000508236	ENST00000538619		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-3UTR	ENST00000508236	ENST00000509366		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CCDC149	chr4	24914439	-	GABRB1	chr4	47033931	+
intron-3CDS	ENST00000504868	ENST00000355192		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000504868	ENST00000308259		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000504868	ENST00000540804		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000504868	ENST00000535664		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-intron	ENST00000504868	ENST00000538725		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
Frame-shit	ENST00000388914	ENST00000355192		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
Frame-shit	ENST00000388914	ENST00000308259		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
Frame-shit	ENST00000388914	ENST00000540804		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
Frame-shit	ENST00000388914	ENST00000535664		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
5CDS-intron	ENST00000388914	ENST00000538725		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000434846	ENST00000355192		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000434846	ENST00000308259		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000434846	ENST00000540804		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-3CDS	ENST00000434846	ENST00000535664		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
intron-intron	ENST00000434846	ENST00000538725		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CCDC158	chr4	77288447	-	MSRB3	chr12	65847508	+
In-frame	ENST00000263102	ENST00000373910		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	CCDC6	chr10	61665880	-	UBE2D1	chr10	60121098	+
In-frame	ENST00000430627	ENST00000583610		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000430627	ENST00000394294		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000430627	ENST00000264658		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000430627	ENST00000577399		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000447079	ENST00000583610		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000447079	ENST00000394294		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000447079	ENST00000264658		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
In-frame	ENST00000447079	ENST00000577399		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
intron-3CDS	ENST00000559545	ENST00000583610		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
intron-3CDS	ENST00000559545	ENST00000394294		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
intron-3CDS	ENST00000559545	ENST00000264658		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
intron-3CDS	ENST00000559545	ENST00000577399		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	CDK12	chr17	37628016	+	FBXL20	chr17	37439108	-
5CDS-3UTR	ENST00000473706	ENST00000446425		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000473706	ENST00000404924		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000473706	ENST00000309033		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000473706	ENST00000535786		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000380834	ENST00000446425		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000380834	ENST00000404924		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000380834	ENST00000309033		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000380834	ENST00000535786		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000260662	ENST00000446425		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000260662	ENST00000404924		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000260662	ENST00000309033		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000260662	ENST00000535786		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000395845	ENST00000446425		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000395845	ENST00000404924		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000395845	ENST00000309033		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000395845	ENST00000535786		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	CENPO	chr2	25022713	+	UBXN2A	chr2	24222542	+
Frame-shit	ENST00000373233	ENST00000261751		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
Frame-shit	ENST00000373233	ENST00000412074		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
5CDS-5UTR	ENST00000373233	ENST00000560511		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
Frame-shit	ENST00000309279	ENST00000261751		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
Frame-shit	ENST00000309279	ENST00000412074		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
5CDS-5UTR	ENST00000309279	ENST00000560511		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
Frame-shit	ENST00000373222	ENST00000261751		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
Frame-shit	ENST00000373222	ENST00000412074		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
5CDS-5UTR	ENST00000373222	ENST00000560511		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
intron-3CDS	ENST00000480022	ENST00000261751		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
intron-3CDS	ENST00000480022	ENST00000412074		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
intron-5UTR	ENST00000480022	ENST00000560511		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	CHD6	chr20	40141485	-	CHRNB4	chr15	78923674	-
5CDS-3UTR	ENST00000373233	ENST00000371497		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000373233	ENST00000603338		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000373233	ENST00000329613		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000309279	ENST00000371497		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000309279	ENST00000603338		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000309279	ENST00000329613		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000373222	ENST00000371497		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000373222	ENST00000603338		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
intron-intron	ENST00000373222	ENST00000329613		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000480022	ENST00000371497		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000480022	ENST00000603338		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
intron-intron	ENST00000480022	ENST00000329613		TCGA	RV	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52103683	+
5UTR-3CDS	ENST00000447540	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-3CDS	ENST00000447540	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-5UTR	ENST00000447540	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-5UTR	ENST00000447540	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-intron	ENST00000447540	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-intron	ENST00000447540	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-intron	ENST00000447540	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-3CDS	ENST00000566029	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-3CDS	ENST00000566029	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-5UTR	ENST00000566029	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-5UTR	ENST00000566029	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-intron	ENST00000566029	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-intron	ENST00000566029	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5UTR-intron	ENST00000566029	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-3CDS	ENST00000564845	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-3CDS	ENST00000564845	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-5UTR	ENST00000564845	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-5UTR	ENST00000564845	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000564845	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000564845	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000564845	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-3CDS	ENST00000398510	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-3CDS	ENST00000398510	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-5UTR	ENST00000398510	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-5UTR	ENST00000398510	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000398510	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000398510	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000398510	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-3CDS	ENST00000564582	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-3CDS	ENST00000564582	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-5UTR	ENST00000564582	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-5UTR	ENST00000564582	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000564582	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000564582	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
intron-intron	ENST00000564582	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A081-01A	CHD9	chr16	53088989	+	KSR1	chr17	25877594	+
5CDS-5UTR	ENST00000409900	ENST00000393483		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409900	ENST00000410001		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409900	ENST00000355053		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-intron	ENST00000409900	ENST00000539964		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409900	ENST00000542655		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409900	ENST00000478090		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000488080	ENST00000393483		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000488080	ENST00000410001		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000488080	ENST00000355053		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-intron	ENST00000488080	ENST00000539964		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000488080	ENST00000542655		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000488080	ENST00000478090		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409156	ENST00000393483		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409156	ENST00000410001		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409156	ENST00000355053		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-intron	ENST00000409156	ENST00000539964		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409156	ENST00000542655		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5CDS-5UTR	ENST00000409156	ENST00000478090		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000295497	ENST00000393483		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000295497	ENST00000410001		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000295497	ENST00000355053		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-intron	ENST00000295497	ENST00000539964		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000295497	ENST00000542655		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000295497	ENST00000478090		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000409597	ENST00000393483		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000409597	ENST00000410001		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000409597	ENST00000355053		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-intron	ENST00000409597	ENST00000539964		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000409597	ENST00000542655		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
intron-5UTR	ENST00000409597	ENST00000478090		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CHN1	chr2	175869622	-	TSGA10	chr2	99734222	-
5UTR-5UTR	ENST00000434302	ENST00000456324		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
5UTR-3UTR	ENST00000434302	ENST00000586094		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
5UTR-5UTR	ENST00000434302	ENST00000443387		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
5UTR-5UTR	ENST00000438847	ENST00000456324		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
5UTR-3UTR	ENST00000438847	ENST00000586094		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
5UTR-5UTR	ENST00000438847	ENST00000443387		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
3UTR-5UTR	ENST00000604556	ENST00000456324		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
3UTR-3UTR	ENST00000604556	ENST00000586094		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
3UTR-5UTR	ENST00000604556	ENST00000443387		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
intron-5UTR	ENST00000262622	ENST00000456324		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
intron-3UTR	ENST00000262622	ENST00000586094		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
intron-5UTR	ENST00000262622	ENST00000443387		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CHST8	chr19	34113202	+	ZNF146	chr19	36719650	+
Frame-shit	ENST00000361654	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000361654	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
5CDS-5UTR	ENST00000361654	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
In-frame	ENST00000545889	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
In-frame	ENST00000545889	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
5CDS-5UTR	ENST00000545889	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000302528	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000302528	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
5CDS-5UTR	ENST00000302528	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000358808	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000358808	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
5CDS-5UTR	ENST00000358808	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000537178	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000537178	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
5CDS-5UTR	ENST00000537178	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000540338	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000540338	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
5CDS-5UTR	ENST00000540338	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
intron-3CDS	ENST00000536634	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
intron-3CDS	ENST00000536634	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
intron-5UTR	ENST00000536634	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
intron-3CDS	ENST00000540539	ENST00000331738		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
intron-3CDS	ENST00000540539	ENST00000354654		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
intron-5UTR	ENST00000540539	ENST00000392442		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	CLIP1	chr12	122812494	-	RSRC2	chr12	122992997	-
Frame-shit	ENST00000266546	ENST00000447925		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000266546	ENST00000435379		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000266546	ENST00000266505		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000266546	ENST00000539875		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000266546	ENST00000534932		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000266546	ENST00000538330		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
5CDS-3UTR	ENST00000266546	ENST00000541695		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
5CDS-intron	ENST00000266546	ENST00000542762		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000537408	ENST00000447925		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000537408	ENST00000435379		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000537408	ENST00000266505		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000537408	ENST00000539875		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000537408	ENST00000534932		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
Frame-shit	ENST00000537408	ENST00000538330		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
5CDS-3UTR	ENST00000537408	ENST00000541695		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
5CDS-intron	ENST00000537408	ENST00000542762		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3CDS	ENST00000331148	ENST00000447925		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3CDS	ENST00000331148	ENST00000435379		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3CDS	ENST00000331148	ENST00000266505		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3CDS	ENST00000331148	ENST00000539875		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3CDS	ENST00000331148	ENST00000534932		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3CDS	ENST00000331148	ENST00000538330		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-3UTR	ENST00000331148	ENST00000541695		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
intron-intron	ENST00000331148	ENST00000542762		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	CLSTN3	chr12	7295907	+	PLCZ1	chr12	18837213	-
In-frame	ENST00000537098	ENST00000570137		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
In-frame	ENST00000537098	ENST00000562812		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
In-frame	ENST00000537098	ENST00000566173		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
In-frame	ENST00000537098	ENST00000563890		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
5CDS-5UTR	ENST00000537098	ENST00000562753		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000539778	ENST00000570137		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000539778	ENST00000562812		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000539778	ENST00000566173		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000539778	ENST00000563890		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-5UTR	ENST00000539778	ENST00000562753		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000566513	ENST00000570137		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000566513	ENST00000562812		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000566513	ENST00000566173		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000566513	ENST00000563890		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-5UTR	ENST00000566513	ENST00000562753		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000398040	ENST00000570137		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000398040	ENST00000562812		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000398040	ENST00000566173		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000398040	ENST00000563890		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
intron-5UTR	ENST00000398040	ENST00000562753		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CMIP	chr16	81479146	+	CDYL2	chr16	80719026	-
Frame-shit	ENST00000369878	ENST00000375023		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000443903		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000465528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000425600		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000437843		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000495974		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000439349		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000490019		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000383264		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000461090		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000454571		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000487528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000457094		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369878	ENST00000493728		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
Frame-shit	ENST00000433628	ENST00000375023		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000443903		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000465528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000425600		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000437843		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000495974		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000439349		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000490019		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000383264		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000461090		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000454571		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000487528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000457094		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000433628	ENST00000493728		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
Frame-shit	ENST00000369875	ENST00000375023		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000443903		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000465528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000425600		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000437843		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000495974		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000439349		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000490019		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000383264		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000461090		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000454571		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000487528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000457094		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
5CDS-intron	ENST00000369875	ENST00000493728		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-3CDS	ENST00000475511	ENST00000375023		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000443903		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000465528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000425600		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000437843		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000495974		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000439349		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000490019		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000383264		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000461090		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000454571		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000487528		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000457094		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
intron-intron	ENST00000475511	ENST00000493728		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	CNNM2	chr10	104679858	+	NOTCH4	chr6	32172166	-
Frame-shit	ENST00000396299	ENST00000306177		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CREB5	chr7	28547355	+	USP42	chr7	6196385	+
Frame-shit	ENST00000357727	ENST00000306177		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CREB5	chr7	28547355	+	USP42	chr7	6196385	+
Frame-shit	ENST00000396300	ENST00000306177		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CREB5	chr7	28547355	+	USP42	chr7	6196385	+
Frame-shit	ENST00000409603	ENST00000306177		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CREB5	chr7	28547355	+	USP42	chr7	6196385	+
intron-3CDS	ENST00000396298	ENST00000306177		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CREB5	chr7	28547355	+	USP42	chr7	6196385	+
intron-3CDS	ENST00000482692	ENST00000306177		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CREB5	chr7	28547355	+	USP42	chr7	6196385	+
Frame-shit	ENST00000378863	ENST00000284951		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
Frame-shit	ENST00000378863	ENST00000378072		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
5CDS-5UTR	ENST00000378863	ENST00000486903		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
Frame-shit	ENST00000452938	ENST00000284951		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
Frame-shit	ENST00000452938	ENST00000378072		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
5CDS-5UTR	ENST00000452938	ENST00000486903		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
Frame-shit	ENST00000378868	ENST00000284951		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
Frame-shit	ENST00000378868	ENST00000378072		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
5CDS-5UTR	ENST00000378868	ENST00000486903		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
intron-3CDS	ENST00000464921	ENST00000284951		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
intron-3CDS	ENST00000464921	ENST00000378072		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
intron-5UTR	ENST00000464921	ENST00000486903		TCGA	RV	BRCA	TCGA-A8-A06X-01A	CRLS1	chr20	5990558	+	SEL1L2	chr20	13899769	-
Frame-shit	ENST00000343508	ENST00000406091		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
Frame-shit	ENST00000343508	ENST00000262231		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
Frame-shit	ENST00000343508	ENST00000507740		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000343508	ENST00000522174		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000343508	ENST00000436393		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000343508	ENST00000339750		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000297405	ENST00000406091		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000297405	ENST00000262231		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000297405	ENST00000507740		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000297405	ENST00000522174		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000297405	ENST00000436393		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000297405	ENST00000339750		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000455883	ENST00000406091		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000455883	ENST00000262231		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000455883	ENST00000507740		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000455883	ENST00000522174		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000455883	ENST00000436393		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000455883	ENST00000339750		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000352409	ENST00000406091		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000352409	ENST00000262231		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
In-frame	ENST00000352409	ENST00000507740		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000352409	ENST00000522174		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000352409	ENST00000436393		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
5CDS-intron	ENST00000352409	ENST00000339750		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
intron-3CDS	ENST00000519485	ENST00000406091		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
intron-3CDS	ENST00000519485	ENST00000262231		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
intron-3CDS	ENST00000519485	ENST00000507740		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
intron-intron	ENST00000519485	ENST00000522174		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
intron-intron	ENST00000519485	ENST00000436393		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
intron-intron	ENST00000519485	ENST00000339750		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CSMD3	chr8	113599295	-	RIMS2	chr8	104955001	+
Frame-shit	ENST00000433211	ENST00000393774		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-3UTR	ENST00000433211	ENST00000460005		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-3UTR	ENST00000433211	ENST00000450042		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-intron	ENST00000433211	ENST00000216453		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
In-frame	ENST00000373744	ENST00000393774		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-3UTR	ENST00000373744	ENST00000460005		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-3UTR	ENST00000373744	ENST00000450042		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-intron	ENST00000373744	ENST00000216453		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
In-frame	ENST00000545309	ENST00000393774		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-3UTR	ENST00000545309	ENST00000460005		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-3UTR	ENST00000545309	ENST00000450042		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-intron	ENST00000545309	ENST00000216453		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
intron-3CDS	ENST00000373735	ENST00000393774		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
intron-3UTR	ENST00000373735	ENST00000460005		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
intron-3UTR	ENST00000373735	ENST00000450042		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
intron-intron	ENST00000373735	ENST00000216453		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	CTNNA3	chr10	69281600	-	C14orf166B	chr14	77302550	+
5CDS-5UTR	ENST00000369681	ENST00000446702		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
5CDS-intron	ENST00000369681	ENST00000539053		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
5CDS-5UTR	ENST00000369681	ENST00000350110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
5CDS-5UTR	ENST00000369679	ENST00000446702		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
5CDS-intron	ENST00000369679	ENST00000539053		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
5CDS-5UTR	ENST00000369679	ENST00000350110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
intron-5UTR	ENST00000479164	ENST00000446702		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
intron-intron	ENST00000479164	ENST00000539053		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
intron-5UTR	ENST00000479164	ENST00000350110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CYB5R4	chr6	84574047	+	CNTN6	chr3	1189611	+
5UTR-5UTR	ENST00000342350	ENST00000540511		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
5UTR-5UTR	ENST00000342350	ENST00000322765		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
intron-5UTR	ENST00000588499	ENST00000540511		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
intron-5UTR	ENST00000588499	ENST00000322765		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
intron-5UTR	ENST00000588295	ENST00000540511		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
intron-5UTR	ENST00000588295	ENST00000322765		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
5UTR-5UTR	ENST00000310604	ENST00000540511		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
5UTR-5UTR	ENST00000310604	ENST00000322765		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
intron-5UTR	ENST00000452796	ENST00000540511		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
intron-5UTR	ENST00000452796	ENST00000322765		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	DCAKD	chr17	43138256	-	PLCD3	chr17	43198739	-
In-frame	ENST00000264018	ENST00000317011		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	DDX6	chr11	118651830	-	FOXR1	chr11	118849492	+
In-frame	ENST00000534980	ENST00000317011		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	DDX6	chr11	118651830	-	FOXR1	chr11	118849492	+
Frame-shit	ENST00000526070	ENST00000317011		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	DDX6	chr11	118651830	-	FOXR1	chr11	118849492	+
intron-3CDS	ENST00000537045	ENST00000369002		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
intron-intron	ENST00000537045	ENST00000460009		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000263196	ENST00000369002		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000263196	ENST00000460009		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000545799	ENST00000369002		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000545799	ENST00000460009		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000473832	ENST00000369002		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
intron-intron	ENST00000473832	ENST00000460009		TCGA	RV	BRCA	TCGA-A8-A083-01A	DGCR2	chr22	19023801	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000295373	ENST00000426016		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
Frame-shit	ENST00000295373	ENST00000402219		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
Frame-shit	ENST00000295373	ENST00000395038		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
5CDS-3UTR	ENST00000295373	ENST00000428721		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
5CDS-intron	ENST00000295373	ENST00000472480		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
intron-3CDS	ENST00000479345	ENST00000426016		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
intron-3CDS	ENST00000479345	ENST00000402219		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
intron-3CDS	ENST00000479345	ENST00000395038		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
intron-3UTR	ENST00000479345	ENST00000428721		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
intron-intron	ENST00000479345	ENST00000472480		TCGA	RV	BRCA	TCGA-C8-A12P-01A	DHX57	chr2	39033701	-	SOS1	chr2	39251278	-
Frame-shit	ENST00000340748	ENST00000160262		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
Frame-shit	ENST00000340748	ENST00000589261		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
Frame-shit	ENST00000540357	ENST00000160262		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
Frame-shit	ENST00000540357	ENST00000589261		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
Frame-shit	ENST00000359526	ENST00000160262		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
Frame-shit	ENST00000359526	ENST00000589261		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
intron-3CDS	ENST00000589538	ENST00000160262		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
intron-3CDS	ENST00000589538	ENST00000589261		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNMT1	chr19	10283766	-	ICAM3	chr19	10446652	-
5CDS-5UTR	ENST00000280333	ENST00000265381		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	DOCK1	chr10	129055693	+	APBA1	chr9	72132195	-
5CDS-intron	ENST00000280333	ENST00000470082		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	DOCK1	chr10	129055693	+	APBA1	chr9	72132195	-
3UTR-5UTR	ENST00000484400	ENST00000265381		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	DOCK1	chr10	129055693	+	APBA1	chr9	72132195	-
3UTR-intron	ENST00000484400	ENST00000470082		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	DOCK1	chr10	129055693	+	APBA1	chr9	72132195	-
Frame-shit	ENST00000370192	ENST00000296591		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
Frame-shit	ENST00000370192	ENST00000380138		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
5CDS-intron	ENST00000370192	ENST00000510271		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-3CDS	ENST00000474241	ENST00000296591		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-3CDS	ENST00000474241	ENST00000380138		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-intron	ENST00000474241	ENST00000510271		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-3CDS	ENST00000423006	ENST00000296591		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-3CDS	ENST00000423006	ENST00000380138		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-intron	ENST00000423006	ENST00000510271		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-3CDS	ENST00000306031	ENST00000296591		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-3CDS	ENST00000306031	ENST00000380138		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-intron	ENST00000306031	ENST00000510271		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	DPYD	chr1	97700408	-	EDIL3	chr5	83476339	-
intron-5UTR	ENST00000346618	ENST00000370939		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
intron-5UTR	ENST00000346618	ENST00000323557		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
intron-5UTR	ENST00000346618	ENST00000244426		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
intron-intron	ENST00000346618	ENST00000461222		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000535432	ENST00000370939		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000535432	ENST00000323557		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
5CDS-5UTR	ENST00000535432	ENST00000244426		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
5CDS-intron	ENST00000535432	ENST00000461222		TCGA	RV	BRCA	TCGA-LL-A740-01A	E2F3	chr6	20404063	+	FBXO9	chr6	52935855	+
intron-intron	ENST00000295824	ENST00000460467		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000295824	ENST00000396755		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000295824	ENST00000418129		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000295824	ENST00000432376		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
5CDS-intron	ENST00000344838	ENST00000460467		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
5CDS-intron	ENST00000344838	ENST00000396755		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
5CDS-intron	ENST00000344838	ENST00000418129		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
5CDS-intron	ENST00000344838	ENST00000432376		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000498089	ENST00000460467		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000498089	ENST00000396755		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000498089	ENST00000418129		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
intron-intron	ENST00000498089	ENST00000432376		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	EFHB	chr3	19977633	-	PLCL2	chr3	17131225	+
In-frame	ENST00000462484	ENST00000371561		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
In-frame	ENST00000462484	ENST00000315048		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000471122		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000350902		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000371553		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000371546		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000371559		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000371555		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000371550		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000462484	ENST00000371560		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
In-frame	ENST00000334856	ENST00000371561		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
In-frame	ENST00000334856	ENST00000315048		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000471122		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000350902		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000371553		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000371546		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000371559		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000371555		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000371550		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000334856	ENST00000371560		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
In-frame	ENST00000460843	ENST00000371561		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
In-frame	ENST00000460843	ENST00000315048		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000471122		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000350902		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371553		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371546		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371559		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371555		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371550		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371560		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3CDS	ENST00000371394	ENST00000371561		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3CDS	ENST00000371394	ENST00000315048		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000471122		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000350902		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000371553		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000371546		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000371559		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000371555		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000371550		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
3UTR-3UTR	ENST00000371394	ENST00000371560		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EHMT1	chr9	140611634	+	GRIN1	chr9	140036465	+
5CDS-intron	ENST00000409514	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409514	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409514	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409514	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409514	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409514	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409098	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409098	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409098	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409098	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409098	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409098	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409394	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409394	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409394	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409394	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409394	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409394	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000258416	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000258416	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000258416	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000258416	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000258416	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000258416	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409495	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409495	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409495	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409495	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409495	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409495	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409167	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409167	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409167	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409167	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409167	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409167	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409322	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409322	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409322	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409322	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409322	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
5CDS-intron	ENST00000409322	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
intron-intron	ENST00000479834	ENST00000273009		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
intron-intron	ENST00000479834	ENST00000360410		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
intron-intron	ENST00000479834	ENST00000325385		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
intron-intron	ENST00000479834	ENST00000409401		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
intron-intron	ENST00000479834	ENST00000409307		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
intron-intron	ENST00000479834	ENST00000470087		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	EIF4E2	chr2	233429061	+	DIS3L2	chr2	233194523	+
In-frame	ENST00000360971	ENST00000369689		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	ENPP1	chr6	132129415	+	RIPPLY2	chr6	84563816	+
In-frame	ENST00000360971	ENST00000369687		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	ENPP1	chr6	132129415	+	RIPPLY2	chr6	84563816	+
intron-3CDS	ENST00000202028	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000202028	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
5UTR-3CDS	ENST00000373950	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
5UTR-3CDS	ENST00000373950	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000441639	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000441639	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000373946	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000373946	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000338074	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000338074	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000373941	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000373941	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000479336	ENST00000267953		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
intron-3CDS	ENST00000479336	ENST00000335661		TCGA	RV	BRCA	TCGA-E2-A10C-01A	EPB41L1	chr20	34709738	+	BCL2A1	chr15	80253516	-
Frame-shit	ENST00000254928	ENST00000266070		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
Frame-shit	ENST00000254928	ENST00000395343		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000395340		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000395335		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000370371		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000370368		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000354665		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000370366		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
5CDS-intron	ENST00000254928	ENST00000266071		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-3CDS	ENST00000578001	ENST00000266070		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-3CDS	ENST00000578001	ENST00000395343		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000395340		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000395335		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000370371		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000370368		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000354665		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000370366		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
3UTR-intron	ENST00000578001	ENST00000266071		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ERAL1	chr17	27182335	+	DIDO1	chr20	61513766	-
intron-intron	ENST00000584601	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584601	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584601	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584601	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000584601	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000406381	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000406381	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000406381	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000406381	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000406381	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000541774	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000541774	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000541774	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000541774	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000541774	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000445658	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000445658	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000445658	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000445658	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000445658	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000540147	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000540147	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000540147	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000540147	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000540147	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584450	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584450	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584450	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584450	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000584450	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000269571	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000269571	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000269571	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000269571	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000269571	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000578199	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000578199	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000578199	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000578199	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000578199	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000540042	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000540042	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000540042	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000540042	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000540042	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584888	ENST00000360325		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584888	ENST00000538261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584888	ENST00000397317		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000584888	ENST00000571881		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000584888	ENST00000573745		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37884915	+	CLDN7	chr17	7166264	-
In-frame	ENST00000396153	ENST00000371208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
5CDS-intron	ENST00000396153	ENST00000465876		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
5CDS-intron	ENST00000396153	ENST00000395561		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
Frame-shit	ENST00000371778	ENST00000371208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
5CDS-intron	ENST00000371778	ENST00000465876		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
5CDS-intron	ENST00000371778	ENST00000395561		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
intron-3CDS	ENST00000545823	ENST00000371208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
intron-intron	ENST00000545823	ENST00000465876		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
intron-intron	ENST00000545823	ENST00000395561		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
intron-3CDS	ENST00000472808	ENST00000371208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
intron-intron	ENST00000472808	ENST00000465876		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
intron-intron	ENST00000472808	ENST00000395561		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	FAF1	chr1	51210356	-	HOOK1	chr1	60330304	+
Frame-shit	ENST00000450976	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000450976	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000450976	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000450976	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000450976	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000450976	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000450976	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000418281	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000418281	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000418281	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000418281	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000418281	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000418281	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000418281	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000340957	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000340957	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000340957	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000340957	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000340957	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000340957	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000340957	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000383847	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000383847	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000383847	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000383847	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000383847	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000383847	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000383847	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-3CDS	ENST00000497070	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-3CDS	ENST00000497070	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-5UTR	ENST00000497070	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-5UTR	ENST00000497070	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-5UTR	ENST00000497070	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-5UTR	ENST00000497070	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
intron-5UTR	ENST00000497070	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000453072	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000453072	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000453072	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000453072	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000453072	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000453072	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000453072	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000310585	ENST00000240922		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
Frame-shit	ENST00000310585	ENST00000477813		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000310585	ENST00000497525		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000310585	ENST00000497255		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000310585	ENST00000493454		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000310585	ENST00000493900		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
5CDS-5UTR	ENST00000310585	ENST00000467022		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	FAM131A	chr3	184060648	+	NAA50	chr3	113442939	-
In-frame	ENST00000355740	ENST00000304623		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355740	ENST00000359640		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355740	ENST00000511377		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355740	ENST00000458100		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355740	ENST00000503622		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
5CDS-5UTR	ENST00000355740	ENST00000495388		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000352159	ENST00000304623		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000352159	ENST00000359640		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000352159	ENST00000511377		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000352159	ENST00000458100		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000352159	ENST00000503622		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
5CDS-5UTR	ENST00000352159	ENST00000495388		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000357339	ENST00000304623		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000357339	ENST00000359640		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000357339	ENST00000511377		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000357339	ENST00000458100		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000357339	ENST00000503622		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
5CDS-5UTR	ENST00000357339	ENST00000495388		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355279	ENST00000304623		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355279	ENST00000359640		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355279	ENST00000511377		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355279	ENST00000458100		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
In-frame	ENST00000355279	ENST00000503622		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
5CDS-5UTR	ENST00000355279	ENST00000495388		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
3UTR-3CDS	ENST00000313771	ENST00000304623		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
3UTR-3CDS	ENST00000313771	ENST00000359640		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
3UTR-3CDS	ENST00000313771	ENST00000511377		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
3UTR-3CDS	ENST00000313771	ENST00000458100		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
3UTR-3CDS	ENST00000313771	ENST00000503622		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
3UTR-5UTR	ENST00000313771	ENST00000495388		TCGA	RV	BRCA	TCGA-E9-A247-01A	FAS	chr10	90762951	+	CTNND2	chr5	11023091	-
5CDS-intron	ENST00000583610	ENST00000424789		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000583610	ENST00000389520		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000394294	ENST00000424789		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000394294	ENST00000389520		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000264658	ENST00000424789		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000264658	ENST00000389520		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000577399	ENST00000424789		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5CDS-intron	ENST00000577399	ENST00000389520		TCGA	RV	BRCA	TCGA-A8-A076-01A	FBXL20	chr17	37499433	-	TANC2	chr17	61086898	+
5UTR-3CDS	ENST00000493559	ENST00000261978		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
5UTR-3CDS	ENST00000493559	ENST00000556690		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
5UTR-intron	ENST00000493559	ENST00000557425		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
Frame-shit	ENST00000608872	ENST00000261978		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
Frame-shit	ENST00000608872	ENST00000556690		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
5CDS-intron	ENST00000608872	ENST00000557425		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
Frame-shit	ENST00000340778	ENST00000261978		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
Frame-shit	ENST00000340778	ENST00000556690		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
5CDS-intron	ENST00000340778	ENST00000557425		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	FBXW2	chr9	123538371	-	LTBP2	chr14	74991928	-
5UTR-3CDS	ENST00000281708	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-intron	ENST00000281708	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-3CDS	ENST00000603548	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-intron	ENST00000603548	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-3CDS	ENST00000604872	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-intron	ENST00000604872	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-3CDS	ENST00000296555	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-intron	ENST00000296555	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-3CDS	ENST00000263981	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-intron	ENST00000263981	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-3CDS	ENST00000393956	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-intron	ENST00000393956	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-3CDS	ENST00000603841	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
intron-intron	ENST00000603841	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-3CDS	ENST00000604095	ENST00000304385		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5UTR-intron	ENST00000604095	ENST00000504064		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	FBXW7	chr4	153456093	-	TMEM154	chr4	153549713	-
5CDS-5UTR	ENST00000311172	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000311172	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-intron	ENST00000311172	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000409314	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000409314	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-intron	ENST00000409314	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000409418	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000409418	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-intron	ENST00000409418	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000458644	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000458644	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-intron	ENST00000458644	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000409853	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-5UTR	ENST00000409853	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5CDS-intron	ENST00000409853	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
intron-5UTR	ENST00000409263	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
intron-5UTR	ENST00000409263	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
intron-intron	ENST00000409263	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	FCHSD2	chr11	72632873	-	DTX4	chr11	58949212	+
5UTR-3CDS	ENST00000478194	ENST00000378883		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
5UTR-3CDS	ENST00000478194	ENST00000378896		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
5UTR-3CDS	ENST00000478194	ENST00000378886		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
5UTR-3CDS	ENST00000478194	ENST00000265187		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
In-frame	ENST00000217289	ENST00000378883		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
In-frame	ENST00000217289	ENST00000378896		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
In-frame	ENST00000217289	ENST00000378886		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
In-frame	ENST00000217289	ENST00000265187		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
Frame-shit	ENST00000536936	ENST00000378883		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
Frame-shit	ENST00000536936	ENST00000378896		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
Frame-shit	ENST00000536936	ENST00000378886		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
Frame-shit	ENST00000536936	ENST00000265187		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	FERMT1	chr20	6060083	-	MCM8	chr20	5937772	+
3UTR-3CDS	ENST00000460736	ENST00000344773		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
3UTR-3CDS	ENST00000460736	ENST00000379624		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
3UTR-3CDS	ENST00000460736	ENST00000342045		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
3UTR-3CDS	ENST00000460736	ENST00000379632		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
3UTR-3CDS	ENST00000460736	ENST00000361704		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
3UTR-intron	ENST00000460736	ENST00000603461		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000379619	ENST00000344773		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000379619	ENST00000379624		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000379619	ENST00000342045		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000379619	ENST00000379632		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000379619	ENST00000361704		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000379619	ENST00000603461		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000264716	ENST00000344773		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000264716	ENST00000379624		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000264716	ENST00000342045		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000264716	ENST00000379632		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000264716	ENST00000361704		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000264716	ENST00000603461		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000545753	ENST00000344773		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000545753	ENST00000379624		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000545753	ENST00000342045		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000545753	ENST00000379632		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
Frame-shit	ENST00000545753	ENST00000361704		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000545753	ENST00000603461		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	FOSL2	chr2	28627225	+	BRE	chr2	28521205	+
In-frame	ENST00000372572	ENST00000448907		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
In-frame	ENST00000372572	ENST00000371827		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
In-frame	ENST00000372572	ENST00000357083		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
In-frame	ENST00000372572	ENST00000371824		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
In-frame	ENST00000372572	ENST00000371823		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
In-frame	ENST00000372572	ENST00000371821		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
In-frame	ENST00000372572	ENST00000371819		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
5CDS-3UTR	ENST00000372572	ENST00000492299		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000448907		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000371827		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000357083		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000371824		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000371823		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000371821		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000372573	ENST00000371819		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
5CDS-3UTR	ENST00000372573	ENST00000492299		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000448907		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000371827		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000357083		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000371824		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000371823		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000371821		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361346	ENST00000371819		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
5CDS-3UTR	ENST00000361346	ENST00000492299		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000448907		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000371827		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000357083		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000371824		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000371823		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000371821		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000361776	ENST00000371819		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
5CDS-3UTR	ENST00000361776	ENST00000492299		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000448907		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000371827		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000357083		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000371824		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000371823		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000371821		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000545068	ENST00000371819		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
5CDS-3UTR	ENST00000545068	ENST00000492299		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000448907		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000371827		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000357083		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000371824		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000371823		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000371821		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3CDS	ENST00000372571	ENST00000371819		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
intron-3UTR	ENST00000372571	ENST00000492299		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	FOXJ3	chr1	42776721	-	ELAVL4	chr1	50642761	+
Frame-shit	ENST00000318789	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000318789	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318789	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
In-frame	ENST00000475937	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
In-frame	ENST00000475937	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000475937	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000493089	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000493089	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000493089	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000484350	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000484350	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000484350	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000318779	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
Frame-shit	ENST00000318779	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000318779	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-3CDS	ENST00000491238	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-3CDS	ENST00000491238	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000491238	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
In-frame	ENST00000498215	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
In-frame	ENST00000498215	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000498215	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
In-frame	ENST00000468577	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
In-frame	ENST00000468577	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5CDS-intron	ENST00000468577	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-3CDS	ENST00000472382	ENST00000481646		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-3CDS	ENST00000472382	ENST00000469044		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000491704		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000358441		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000489213		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000461822		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000485396		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000471453		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000470821		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000393058		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
intron-intron	ENST00000472382	ENST00000538260		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	FOXP1	chr3	71247353	-	ARMC8	chr3	137928659	+
5UTR-3UTR	ENST00000318789	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000318789	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000475937	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000475937	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000493089	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000493089	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000484350	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000484350	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000318779	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3UTR	ENST00000318779	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000491238	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000491238	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000498215	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000498215	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000468577	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000468577	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000472382	ENST00000505931		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
intron-3UTR	ENST00000472382	ENST00000381647		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	FOXP1	chr3	71348971	-	C5orf51	chr5	41907838	+
5UTR-3CDS	ENST00000368655	ENST00000368559		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000368655	ENST00000368553		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000368655	ENST00000271854		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153967656	-
5CDS-5UTR	ENST00000378103	ENST00000518857		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378103	ENST00000395862		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378103	ENST00000521514		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378103	ENST00000518738		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000378088	ENST00000518857		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000378088	ENST00000395862		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000378088	ENST00000521514		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000378088	ENST00000518738		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378094	ENST00000518857		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378094	ENST00000395862		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378094	ENST00000521514		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000378094	ENST00000518738		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000545786	ENST00000518857		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000545786	ENST00000395862		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000545786	ENST00000521514		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-5UTR	ENST00000545786	ENST00000518738		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000467252	ENST00000518857		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000467252	ENST00000395862		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000467252	ENST00000521514		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
intron-5UTR	ENST00000467252	ENST00000518738		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GBA2	chr9	35748343	-	ATP6V1C1	chr8	104061098	+
5CDS-intron	ENST00000369443	ENST00000369717		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
5CDS-intron	ENST00000369443	ENST00000369716		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
5CDS-intron	ENST00000369443	ENST00000241356		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
5CDS-5UTR	ENST00000369443	ENST00000486342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000369442	ENST00000369717		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000369442	ENST00000369716		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000369442	ENST00000241356		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-5UTR	ENST00000369442	ENST00000486342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000464026	ENST00000369717		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000464026	ENST00000369716		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000464026	ENST00000241356		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
intron-5UTR	ENST00000464026	ENST00000486342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	GDAP2	chr1	118420631	-	ADORA3	chr1	112043178	-
5UTR-3UTR	ENST00000261858	ENST00000560188		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	SPESP1	chr15	69237938	+
5UTR-3UTR	ENST00000261858	ENST00000310673		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	SPESP1	chr15	69237938	+
intron-3UTR	ENST00000559420	ENST00000560188		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	SPESP1	chr15	69237938	+
intron-3UTR	ENST00000559420	ENST00000310673		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	SPESP1	chr15	69237938	+
intron-3UTR	ENST00000559500	ENST00000560188		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	SPESP1	chr15	69237938	+
intron-3UTR	ENST00000559500	ENST00000310673		TCGA	RV	BRCA	TCGA-A8-A09C-01A	GLCE	chr15	69453096	+	SPESP1	chr15	69237938	+
Frame-shit	ENST00000405460	ENST00000399107		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
Frame-shit	ENST00000405460	ENST00000504930		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
5CDS-intron	ENST00000405460	ENST00000514483		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
intron-3CDS	ENST00000425867	ENST00000399107		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
intron-3CDS	ENST00000425867	ENST00000504930		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
intron-intron	ENST00000425867	ENST00000514483		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
intron-3CDS	ENST00000450321	ENST00000399107		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
intron-3CDS	ENST00000450321	ENST00000504930		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
intron-intron	ENST00000450321	ENST00000514483		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	GPR98	chr5	89938858	+	POLR3G	chr5	89797723	+
Frame-shit	ENST00000264235	ENST00000539563		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
In-frame	ENST00000264235	ENST00000490035		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000264235	ENST00000498645		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
Frame-shit	ENST00000316626	ENST00000539563		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
In-frame	ENST00000316626	ENST00000490035		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000316626	ENST00000498645		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000473886	ENST00000539563		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000473886	ENST00000490035		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
intron-intron	ENST00000473886	ENST00000498645		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	GSK3B	chr3	119624602	-	LSAMP	chr3	116163802	-
Frame-shit	ENST00000359541	ENST00000281405		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	GTF3C2	chr2	27564815	-	WDR35	chr2	20160375	-
Frame-shit	ENST00000359541	ENST00000345530		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	GTF3C2	chr2	27564815	-	WDR35	chr2	20160375	-
5CDS-intron	ENST00000359541	ENST00000416055		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	GTF3C2	chr2	27564815	-	WDR35	chr2	20160375	-
Frame-shit	ENST00000264720	ENST00000281405		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	GTF3C2	chr2	27564815	-	WDR35	chr2	20160375	-
Frame-shit	ENST00000264720	ENST00000345530		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	GTF3C2	chr2	27564815	-	WDR35	chr2	20160375	-
5CDS-intron	ENST00000264720	ENST00000416055		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	GTF3C2	chr2	27564815	-	WDR35	chr2	20160375	-
5CDS-intron	ENST00000544848	ENST00000371917		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	H2AFJ	chr12	14930934	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000544848	ENST00000493140		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	H2AFJ	chr12	14930934	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000446394	ENST00000331244		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-3UTR	ENST00000446394	ENST00000368644		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-3UTR	ENST00000446394	ENST00000496195		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-intron	ENST00000371681	ENST00000331244		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-3UTR	ENST00000371681	ENST00000368644		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-3UTR	ENST00000371681	ENST00000496195		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-intron	ENST00000298068	ENST00000331244		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-3UTR	ENST00000298068	ENST00000368644		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
5CDS-3UTR	ENST00000298068	ENST00000496195		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-intron	ENST00000536715	ENST00000331244		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-3UTR	ENST00000536715	ENST00000368644		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-3UTR	ENST00000536715	ENST00000496195		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-intron	ENST00000498446	ENST00000331244		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-3UTR	ENST00000498446	ENST00000368644		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-3UTR	ENST00000498446	ENST00000496195		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-intron	ENST00000371667	ENST00000331244		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-3UTR	ENST00000371667	ENST00000368644		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
intron-3UTR	ENST00000371667	ENST00000496195		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	HECTD2	chr10	93170333	+	GLRX3	chr10	131978377	+
Frame-shit	ENST00000443617	ENST00000300035		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	KIAA0101	chr15	64658274	-
In-frame	ENST00000443617	ENST00000380258		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	KIAA0101	chr15	64658274	-
Frame-shit	ENST00000443617	ENST00000559519		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	KIAA0101	chr15	64658274	-
5CDS-3UTR	ENST00000443617	ENST00000558008		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	KIAA0101	chr15	64658274	-
5CDS-intron	ENST00000443617	ENST00000558250		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	KIAA0101	chr15	64658274	-
5CDS-5UTR	ENST00000458501	ENST00000541730		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
5CDS-5UTR	ENST00000458501	ENST00000324607		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
5CDS-5UTR	ENST00000458501	ENST00000536798		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
5CDS-5UTR	ENST00000379644	ENST00000541730		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
5CDS-5UTR	ENST00000379644	ENST00000324607		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
5CDS-5UTR	ENST00000379644	ENST00000536798		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000297798	ENST00000541730		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000297798	ENST00000324607		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000297798	ENST00000536798		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000521576	ENST00000541730		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000521576	ENST00000324607		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
intron-5UTR	ENST00000521576	ENST00000536798		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	HGSNAT	chr8	43028886	+	MBOAT1	chr6	20153000	-
Frame-shit	ENST00000340170	ENST00000263119		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000340170	ENST00000405822		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000340170	ENST00000398319		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000340170	ENST00000337989		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000340170	ENST00000485008		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000263208	ENST00000263119		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000263208	ENST00000405822		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000263208	ENST00000398319		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000263208	ENST00000337989		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000263208	ENST00000485008		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
In-frame	ENST00000541063	ENST00000263119		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
In-frame	ENST00000541063	ENST00000405822		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
In-frame	ENST00000541063	ENST00000398319		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
In-frame	ENST00000541063	ENST00000337989		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000541063	ENST00000485008		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000546308	ENST00000263119		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000546308	ENST00000405822		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000546308	ENST00000398319		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
Frame-shit	ENST00000546308	ENST00000337989		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000546308	ENST00000485008		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000464189	ENST00000263119		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000464189	ENST00000405822		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000464189	ENST00000398319		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000464189	ENST00000337989		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-intron	ENST00000464189	ENST00000485008		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	HIRA	chr22	19371143	-	CABIN1	chr22	24560368	+
5CDS-intron	ENST00000383329	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HLA-C	chr6	31236528	-	CFB	chr6	31913427	+
5CDS-5UTR	ENST00000336648	ENST00000429072		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
5CDS-5UTR	ENST00000336648	ENST00000271324		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
5CDS-intron	ENST00000336648	ENST00000497404		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
5CDS-5UTR	ENST00000399120	ENST00000429072		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
5CDS-5UTR	ENST00000399120	ENST00000271324		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
5CDS-intron	ENST00000399120	ENST00000497404		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
intron-5UTR	ENST00000482273	ENST00000429072		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
intron-5UTR	ENST00000482273	ENST00000271324		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
intron-intron	ENST00000482273	ENST00000497404		TCGA	RV	BRCA	TCGA-E2-A158-01A	HLCS	chr21	38308749	-	CD53	chr1	111434014	+
Frame-shit	ENST00000271588	ENST00000367510		TCGA	RV	BRCA	TCGA-AR-A256-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185060711	+
Frame-shit	ENST00000271588	ENST00000367509		TCGA	RV	BRCA	TCGA-AR-A256-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185060711	+
Frame-shit	ENST00000367492	ENST00000367510		TCGA	RV	BRCA	TCGA-AR-A256-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185060711	+
Frame-shit	ENST00000367492	ENST00000367509		TCGA	RV	BRCA	TCGA-AR-A256-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185060711	+
intron-3CDS	ENST00000485744	ENST00000367510		TCGA	RV	BRCA	TCGA-AR-A256-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185060711	+
intron-3CDS	ENST00000485744	ENST00000367509		TCGA	RV	BRCA	TCGA-AR-A256-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185060711	+
intron-3CDS	ENST00000464104	ENST00000259486		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
intron-3CDS	ENST00000464104	ENST00000427067		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
intron-intron	ENST00000464104	ENST00000522167		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
intron-intron	ENST00000464104	ENST00000522826		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
intron-intron	ENST00000464104	ENST00000075322		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
intron-intron	ENST00000464104	ENST00000518109		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
Frame-shit	ENST00000375263	ENST00000259486		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
Frame-shit	ENST00000375263	ENST00000427067		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375263	ENST00000522167		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375263	ENST00000522826		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375263	ENST00000075322		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375263	ENST00000518109		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
Frame-shit	ENST00000375262	ENST00000259486		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
Frame-shit	ENST00000375262	ENST00000427067		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375262	ENST00000522167		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375262	ENST00000522826		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375262	ENST00000075322		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000375262	ENST00000518109		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	HSD17B3	chr9	99060698	-	ENPP2	chr8	120638960	-
5CDS-intron	ENST00000299767	ENST00000556679		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000456570		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000477310		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000425368		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000497841		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000417261		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000427888		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000459734		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000455591		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000433503		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000474621		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000424727		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000436692		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000473139		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000399981		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000419920		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000465211		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000375455		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000489605		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000426239		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000419411		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000299767	ENST00000460958		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	HSP90B1	chr12	104341704	+	CFB	chr6	31913427	+
5CDS-5UTR	ENST00000268035	ENST00000336787		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000268035	ENST00000396307		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000268035	ENST00000564609		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000268035	ENST00000569493		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-intron	ENST00000268035	ENST00000561545		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000558762	ENST00000336787		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000558762	ENST00000396307		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000558762	ENST00000564609		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-5UTR	ENST00000558762	ENST00000569493		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5CDS-intron	ENST00000558762	ENST00000561545		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
intron-5UTR	ENST00000560432	ENST00000336787		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
intron-5UTR	ENST00000560432	ENST00000396307		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
intron-5UTR	ENST00000560432	ENST00000564609		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
intron-5UTR	ENST00000560432	ENST00000569493		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
intron-intron	ENST00000560432	ENST00000561545		TCGA	RV	BRCA	TCGA-BH-A1FG-01A	IGF1R	chr15	99251336	+	RAB27A	chr15	55562482	-
5UTR-intron	ENST00000374647	ENST00000375063		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000374647	ENST00000375064		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000374647	ENST00000342112		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000374647	ENST00000375066		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000374647	ENST00000493589		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000537196	ENST00000375063		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000537196	ENST00000375064		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000537196	ENST00000342112		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000537196	ENST00000375066		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
5UTR-intron	ENST00000537196	ENST00000493589		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
intron-intron	ENST00000467959	ENST00000375063		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
intron-intron	ENST00000467959	ENST00000375064		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
intron-intron	ENST00000467959	ENST00000342112		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
intron-intron	ENST00000467959	ENST00000375066		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
intron-intron	ENST00000467959	ENST00000493589		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	IKBKAP	chr9	111696144	-	TBC1D2	chr9	101014208	-
In-frame	ENST00000520810	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000520810	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000520810	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000520810	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000520810	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000520810	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000520810	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000520810	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000520810	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000520810	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000520810	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000520810	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000416505	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000416505	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000416505	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000416505	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000416505	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000416505	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000519735	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000519735	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000519735	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000519735	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000519735	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000519735	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000520835	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000520835	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000520835	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000520835	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000520835	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000520835	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000379708	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000379708	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000379708	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000379708	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000379708	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000379708	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000518983	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000518983	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000518983	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000518983	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000518983	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000518983	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
In-frame	ENST00000522147	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000522147	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000522147	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000522147	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000522147	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
5CDS-intron	ENST00000522147	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000347528		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000289734		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000379758		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000396942		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000396945		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000352337		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-3CDS	ENST00000522785	ENST00000265709		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000522785	ENST00000457297		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000522785	ENST00000522231		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000522785	ENST00000522543		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000522785	ENST00000314214		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
intron-intron	ENST00000522785	ENST00000521407		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41566493	-
Frame-shit	ENST00000368594	ENST00000394289		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368594	ENST00000260753		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368594	ENST00000416354		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368594	ENST00000371728		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
5CDS-3UTR	ENST00000368594	ENST00000478929		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368593	ENST00000394289		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368593	ENST00000260753		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368593	ENST00000416354		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
Frame-shit	ENST00000368593	ENST00000371728		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
5CDS-3UTR	ENST00000368593	ENST00000478929		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
intron-3CDS	ENST00000487614	ENST00000394289		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
intron-3CDS	ENST00000487614	ENST00000260753		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
intron-3CDS	ENST00000487614	ENST00000416354		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
intron-3CDS	ENST00000487614	ENST00000371728		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
intron-3UTR	ENST00000487614	ENST00000478929		TCGA	RV	BRCA	TCGA-AO-A03O-01A	INPP5A	chr10	134579350	+	KIF20B	chr10	91512324	+
5UTR-3CDS	ENST00000290310	ENST00000526767		TCGA	RV	BRCA	TCGA-A8-A06U-01A	KCNE2	chr21	35736450	+	HTN3	chr4	70898884	+
5UTR-3CDS	ENST00000290310	ENST00000530128		TCGA	RV	BRCA	TCGA-A8-A06U-01A	KCNE2	chr21	35736450	+	HTN3	chr4	70898884	+
5UTR-3CDS	ENST00000290310	ENST00000381057		TCGA	RV	BRCA	TCGA-A8-A06U-01A	KCNE2	chr21	35736450	+	HTN3	chr4	70898884	+
5CDS-5UTR	ENST00000404771	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000404771	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000404771	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000404771	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000372440	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000372440	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000372440	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000372440	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000372443	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000372443	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000372443	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000372443	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000286628	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000286628	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000286628	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000286628	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000286627	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000286627	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000286627	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000286627	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000354353	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000354353	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000354353	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000354353	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000404857	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000404857	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000404857	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000404857	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000406533	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000406533	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000406533	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000406533	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000484507	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000484507	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000484507	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
intron-intron	ENST00000484507	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000481070	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000481070	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000481070	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000481070	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000480683	ENST00000303657		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000480683	ENST00000359161		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000480683	ENST00000592546		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000480683	ENST00000587700		TCGA	RV	BRCA	TCGA-E2-A106-01A	KCNMA1	chr10	79397023	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000398645	ENST00000526785		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000398645	ENST00000265651		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000398645	ENST00000530401		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000398645	ENST00000531080		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000398645	ENST00000532057		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000398645	ENST00000534136		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000398645	ENST00000448981		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000398645	ENST00000533103		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000529006	ENST00000526785		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000529006	ENST00000265651		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000529006	ENST00000530401		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000529006	ENST00000531080		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000529006	ENST00000532057		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000529006	ENST00000534136		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000529006	ENST00000448981		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000529006	ENST00000533103		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000526258	ENST00000526785		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000526258	ENST00000265651		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000526258	ENST00000530401		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000526258	ENST00000531080		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000526258	ENST00000532057		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000526258	ENST00000534136		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000526258	ENST00000448981		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000526258	ENST00000533103		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000308783	ENST00000526785		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000308783	ENST00000265651		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000308783	ENST00000530401		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000308783	ENST00000531080		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000308783	ENST00000532057		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000308783	ENST00000534136		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000308783	ENST00000448981		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000308783	ENST00000533103		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000530342	ENST00000526785		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000530342	ENST00000265651		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000530342	ENST00000530401		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000530342	ENST00000531080		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000530342	ENST00000532057		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000530342	ENST00000534136		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-intron	ENST00000530342	ENST00000448981		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000530342	ENST00000533103		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	KDM2A	chr11	66949363	+	FBXO3	chr11	33792376	-
Frame-shit	ENST00000398645	ENST00000398016		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000398645	ENST00000359742		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000398645	ENST00000286445		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000398645	ENST00000542021		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000529006	ENST00000398016		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000529006	ENST00000359742		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000529006	ENST00000286445		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000529006	ENST00000542021		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000526258	ENST00000398016		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000526258	ENST00000359742		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000526258	ENST00000286445		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000526258	ENST00000542021		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000308783	ENST00000398016		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000308783	ENST00000359742		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000308783	ENST00000286445		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000308783	ENST00000542021		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000530342	ENST00000398016		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000530342	ENST00000359742		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000530342	ENST00000286445		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000530342	ENST00000542021		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	KDM2A	chr11	66888829	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000264501	ENST00000400128		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000264501	ENST00000400131		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000264501	ENST00000400135		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000264501	ENST00000400127		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000264501	ENST00000338326		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000264501	ENST00000299295		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000264501	ENST00000543733		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000400128		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000400131		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000400135		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000400127		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000338326		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000299295		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000455637	ENST00000543733		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000400128		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000400131		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000400135		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000400127		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000338326		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000299295		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
5CDS-intron	ENST00000388738	ENST00000543733		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000400128		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000400131		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000400135		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000400127		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000338326		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000299295		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
intron-intron	ENST00000495260	ENST00000543733		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	KIAA1109	chr4	123188113	+	CHODL	chr21	19613305	+
Frame-shit	ENST00000458385	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
Frame-shit	ENST00000458385	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
Frame-shit	ENST00000458385	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
5CDS-5UTR	ENST00000458385	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
In-frame	ENST00000514798	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
In-frame	ENST00000514798	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
In-frame	ENST00000514798	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
5CDS-5UTR	ENST00000514798	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
Frame-shit	ENST00000296775	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
Frame-shit	ENST00000296775	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
Frame-shit	ENST00000296775	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
5CDS-5UTR	ENST00000296775	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
intron-3CDS	ENST00000502992	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
intron-3CDS	ENST00000502992	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
intron-3CDS	ENST00000502992	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
intron-5UTR	ENST00000502992	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-01A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186384203	-
Frame-shit	ENST00000354981	ENST00000525975		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000354981	ENST00000379016		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000354981	ENST00000303296		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000354981	ENST00000456517		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000354981	ENST00000534262		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5UTR-3CDS	ENST00000378003	ENST00000525975		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5UTR-3CDS	ENST00000378003	ENST00000379016		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5UTR-3CDS	ENST00000378003	ENST00000303296		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5UTR-3CDS	ENST00000378003	ENST00000456517		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5UTR-intron	ENST00000378003	ENST00000534262		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000355755	ENST00000525975		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000355755	ENST00000379016		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000355755	ENST00000303296		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000355755	ENST00000456517		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000355755	ENST00000534262		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000408042	ENST00000525975		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000408042	ENST00000379016		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000408042	ENST00000303296		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000408042	ENST00000456517		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000408042	ENST00000534262		TCGA	RV	BRCA	TCGA-A8-A07W-01A	KIF16B	chr20	16488603	-	HIPK3	chr11	33368839	+
Frame-shit	ENST00000377093	ENST00000285039		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377093	ENST00000324581		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377093	ENST00000592688		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377093	ENST00000587895		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
Frame-shit	ENST00000263934	ENST00000285039		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000263934	ENST00000324581		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000263934	ENST00000592688		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000263934	ENST00000587895		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
Frame-shit	ENST00000377086	ENST00000285039		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377086	ENST00000324581		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377086	ENST00000592688		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377086	ENST00000587895		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
Frame-shit	ENST00000377083	ENST00000285039		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377083	ENST00000324581		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377083	ENST00000592688		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377083	ENST00000587895		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
Frame-shit	ENST00000377081	ENST00000285039		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377081	ENST00000324581		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377081	ENST00000592688		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000377081	ENST00000587895		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
intron-3CDS	ENST00000465635	ENST00000285039		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
intron-intron	ENST00000465635	ENST00000324581		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
intron-intron	ENST00000465635	ENST00000592688		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
intron-intron	ENST00000465635	ENST00000587895		TCGA	RV	BRCA	TCGA-E2-A159-01A	KIF1B	chr1	10328321	+	MYO5B	chr18	47527781	-
Frame-shit	ENST00000369261	ENST00000464233		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000369261	ENST00000436010		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000369261	ENST00000495273		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000369261	ENST00000467549		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000369261	ENST00000466906		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000536676	ENST00000464233		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000536676	ENST00000436010		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000536676	ENST00000495273		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000536676	ENST00000467549		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000536676	ENST00000466906		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5UTR-3CDS	ENST00000544166	ENST00000464233		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5UTR-3CDS	ENST00000544166	ENST00000436010		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5UTR-3CDS	ENST00000544166	ENST00000495273		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5UTR-3CDS	ENST00000544166	ENST00000467549		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5UTR-intron	ENST00000544166	ENST00000466906		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000539200	ENST00000464233		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000539200	ENST00000436010		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000539200	ENST00000495273		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
Frame-shit	ENST00000539200	ENST00000467549		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000539200	ENST00000466906		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	KLHL32	chr6	97424053	+	ROBO1	chr3	78988077	-
In-frame	ENST00000316157	ENST00000536985		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000379789		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000540253		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000317350		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000379785		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000379782		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000360521		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000316157	ENST00000379775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000536985		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000379789		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000540253		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000317350		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000379785		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000379782		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000360521		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000469487	ENST00000379775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LARP4B	chr10	909683	-	PFKFB3	chr10	6255586	+
5CDS-3UTR	ENST00000371362	ENST00000474476		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371362	ENST00000371218		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371362	ENST00000303721		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371362	ENST00000371212		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-intron	ENST00000371362	ENST00000371210		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371360	ENST00000474476		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371360	ENST00000371218		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371360	ENST00000303721		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000371360	ENST00000371212		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-intron	ENST00000371360	ENST00000371210		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000545928	ENST00000474476		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000545928	ENST00000371218		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000545928	ENST00000303721		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000545928	ENST00000371212		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-intron	ENST00000545928	ENST00000371210		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000420619	ENST00000474476		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000420619	ENST00000371218		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000420619	ENST00000303721		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-3UTR	ENST00000420619	ENST00000371212		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
5CDS-intron	ENST00000420619	ENST00000371210		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	LDLRAD1	chr1	54475955	-	FGGY	chr1	59922633	+
In-frame	ENST00000255684	ENST00000372270		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000255684	ENST00000372267		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000255684	ENST00000372263		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
In-frame	ENST00000394618	ENST00000372270		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000394618	ENST00000372267		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000394618	ENST00000372263		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
In-frame	ENST00000340246	ENST00000372270		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000340246	ENST00000372267		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000340246	ENST00000372263		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
In-frame	ENST00000425950	ENST00000372270		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000425950	ENST00000372267		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000425950	ENST00000372263		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
In-frame	ENST00000415491	ENST00000372270		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000415491	ENST00000372267		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000415491	ENST00000372263		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81903979	+
5CDS-intron	ENST00000353442	ENST00000458129		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5CDS-intron	ENST00000353442	ENST00000275815		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5UTR-intron	ENST00000359422	ENST00000458129		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5UTR-intron	ENST00000359422	ENST00000275815		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5CDS-intron	ENST00000354505	ENST00000458129		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5CDS-intron	ENST00000354505	ENST00000275815		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5CDS-intron	ENST00000540390	ENST00000458129		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
5CDS-intron	ENST00000540390	ENST00000275815		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
intron-intron	ENST00000430825	ENST00000458129		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
intron-intron	ENST00000430825	ENST00000275815		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589083	-	EPHA1	chr7	143098698	-
In-frame	ENST00000438796	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000438796	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000438796	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000438796	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000438796	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000414675	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000414675	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000414675	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000414675	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000414675	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-3CDS	ENST00000441090	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-3CDS	ENST00000441090	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000441090	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000441090	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000441090	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000334859	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000334859	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000334859	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000334859	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000334859	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000425562	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
In-frame	ENST00000425562	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000425562	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000425562	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5CDS-intron	ENST00000425562	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-3CDS	ENST00000493726	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-3CDS	ENST00000493726	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000493726	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000493726	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000493726	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-3CDS	ENST00000536618	ENST00000474524		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-3CDS	ENST00000536618	ENST00000273432		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000536618	ENST00000491549		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000536618	ENST00000422248		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
intron-intron	ENST00000536618	ENST00000309237		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	LRCH3	chr3	197544173	+	MED12L	chr3	150834125	+
5UTR-intron	ENST00000543378	ENST00000583539		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
5UTR-intron	ENST00000543378	ENST00000337432		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
5UTR-intron	ENST00000543378	ENST00000487921		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
5UTR-intron	ENST00000543378	ENST00000421782		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000327564	ENST00000583539		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000327564	ENST00000337432		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000327564	ENST00000487921		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000327564	ENST00000421782		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000394713	ENST00000583539		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000394713	ENST00000337432		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000394713	ENST00000487921		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000394713	ENST00000421782		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000584368	ENST00000583539		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000584368	ENST00000337432		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000584368	ENST00000487921		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000584368	ENST00000421782		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000341671	ENST00000583539		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000341671	ENST00000337432		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000341671	ENST00000487921		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000341671	ENST00000421782		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000581786	ENST00000583539		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000581786	ENST00000337432		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000581786	ENST00000487921		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
intron-intron	ENST00000581786	ENST00000421782		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	LRRC37B	chr17	30345073	+	RAD51C	chr17	56811479	+
5CDS-5UTR	ENST00000372600	ENST00000302586		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372600	ENST00000320665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372600	ENST00000483599		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372600	ENST00000436267		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372599	ENST00000302586		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372599	ENST00000320665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372599	ENST00000483599		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000372599	ENST00000436267		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000259324	ENST00000302586		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000259324	ENST00000320665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000259324	ENST00000483599		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
5CDS-5UTR	ENST00000259324	ENST00000436267		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000492784	ENST00000302586		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000492784	ENST00000320665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000492784	ENST00000483599		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000492784	ENST00000436267		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	LRRC8A	chr9	131671600	+	CCBL1	chr9	131607690	-
Frame-shit	ENST00000539563	ENST00000335012		TCGA	RV	BRCA	TCGA-BH-A204-01A	LSAMP	chr3	115805171	-	C3orf70	chr3	184801351	-
Frame-shit	ENST00000490035	ENST00000335012		TCGA	RV	BRCA	TCGA-BH-A204-01A	LSAMP	chr3	115805171	-	C3orf70	chr3	184801351	-
intron-3CDS	ENST00000498645	ENST00000335012		TCGA	RV	BRCA	TCGA-BH-A204-01A	LSAMP	chr3	115805171	-	C3orf70	chr3	184801351	-
In-frame	ENST00000404816	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
In-frame	ENST00000354476	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
In-frame	ENST00000390003	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
In-frame	ENST00000418533	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
In-frame	ENST00000402934	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
In-frame	ENST00000404525	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
In-frame	ENST00000407925	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
intron-3CDS	ENST00000272273	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
intron-3CDS	ENST00000498013	ENST00000317907		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	LTBP1	chr2	33413918	+	TTC27	chr2	32983359	+
Frame-shit	ENST00000425019	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000425019	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000425019	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000425019	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000324219	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000324219	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000324219	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000324219	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350198	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350198	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350198	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350198	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000302217	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000302217	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000302217	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000302217	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000413150	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000413150	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000413150	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000413150	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000347699	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000347699	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000347699	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000347699	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000456652	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000456652	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000456652	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000456652	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350878	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350878	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350878	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000350878	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
intron-3CDS	ENST00000498066	ENST00000409238		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
intron-3CDS	ENST00000498066	ENST00000333017		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
intron-3CDS	ENST00000498066	ENST00000423800		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
intron-3CDS	ENST00000498066	ENST00000409679		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	MAP4K4	chr2	102460773	+	LYG2	chr2	99861921	-
Frame-shit	ENST00000354570	ENST00000368087		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
Frame-shit	ENST00000354570	ENST00000356962		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
5CDS-intron	ENST00000354570	ENST00000498260		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000454590	ENST00000368087		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000454590	ENST00000356962		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-intron	ENST00000454590	ENST00000498260		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000544465	ENST00000368087		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000544465	ENST00000356962		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-intron	ENST00000544465	ENST00000498260		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000438100	ENST00000368087		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000438100	ENST00000356962		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-intron	ENST00000438100	ENST00000498260		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000432797	ENST00000368087		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000432797	ENST00000356962		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-intron	ENST00000432797	ENST00000498260		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136871480	-	ARG1	chr6	131904200	+
intron-3CDS	ENST00000374189	ENST00000592409		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374189	ENST00000347900		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374189	ENST00000360202		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374189	ENST00000262625		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374182	ENST00000592409		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374182	ENST00000347900		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374182	ENST00000360202		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374182	ENST00000262625		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000360332	ENST00000592409		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000360332	ENST00000347900		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000360332	ENST00000360202		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000360332	ENST00000262625		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374174	ENST00000592409		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374174	ENST00000347900		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374174	ENST00000360202		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000374174	ENST00000262625		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000395611	ENST00000592409		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000395611	ENST00000347900		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000395611	ENST00000360202		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000395611	ENST00000262625		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000459755	ENST00000592409		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000459755	ENST00000347900		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000459755	ENST00000360202		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000459755	ENST00000262625		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	MAPK8	chr10	49534008	+	KIRREL2	chr19	36355550	+
5CDS-5UTR	ENST00000394287	ENST00000310544		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37579950	-	PHOSPHO1	chr17	47304120	-
5CDS-5UTR	ENST00000394287	ENST00000413580		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37579950	-	PHOSPHO1	chr17	47304120	-
5CDS-5UTR	ENST00000394287	ENST00000514112		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37579950	-	PHOSPHO1	chr17	47304120	-
5CDS-5UTR	ENST00000300651	ENST00000310544		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37579950	-	PHOSPHO1	chr17	47304120	-
5CDS-5UTR	ENST00000300651	ENST00000413580		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37579950	-	PHOSPHO1	chr17	47304120	-
5CDS-5UTR	ENST00000300651	ENST00000514112		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37579950	-	PHOSPHO1	chr17	47304120	-
Frame-shit	ENST00000281928	ENST00000540693		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000337343		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000379274		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000261491		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000536612		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
5CDS-3UTR	ENST00000281928	ENST00000498255		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
5CDS-3UTR	ENST00000281928	ENST00000538674		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000540693		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000337343		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000379274		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000261491		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000536612		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3UTR	ENST00000551197	ENST00000498255		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3UTR	ENST00000551197	ENST00000538674		TCGA	RV	BRCA	TCGA-E2-A15A-06A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000412615		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	MED13L	chr12	116675273	-	TRAFD1	chr12	112572542	+
Frame-shit	ENST00000281928	ENST00000257604		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	MED13L	chr12	116675273	-	TRAFD1	chr12	112572542	+
5UTR-3CDS	ENST00000551197	ENST00000412615		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	MED13L	chr12	116675273	-	TRAFD1	chr12	112572542	+
5UTR-3CDS	ENST00000551197	ENST00000257604		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	MED13L	chr12	116675273	-	TRAFD1	chr12	112572542	+
Frame-shit	ENST00000571589	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
5CDS-3UTR	ENST00000571589	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
Frame-shit	ENST00000574045	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
5CDS-3UTR	ENST00000574045	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
Frame-shit	ENST00000318282	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
5CDS-3UTR	ENST00000318282	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
intron-3CDS	ENST00000572567	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
intron-3UTR	ENST00000572567	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
intron-3CDS	ENST00000341243	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
intron-3UTR	ENST00000341243	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
3UTR-3CDS	ENST00000575537	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
3UTR-3UTR	ENST00000575537	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
intron-3CDS	ENST00000573051	ENST00000166139		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
intron-3UTR	ENST00000573051	ENST00000592947		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	MKL2	chr16	14234617	+	FSTL3	chr19	681650	+
5CDS-intron	ENST00000262065	ENST00000359676		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
5CDS-intron	ENST00000262065	ENST00000475781		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
5CDS-intron	ENST00000262065	ENST00000326071		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
5CDS-intron	ENST00000262065	ENST00000375677		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
5CDS-5UTR	ENST00000262065	ENST00000375678		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
5CDS-5UTR	ENST00000262065	ENST00000201961		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
intron-intron	ENST00000577038	ENST00000359676		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
intron-intron	ENST00000577038	ENST00000475781		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
intron-intron	ENST00000577038	ENST00000326071		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
intron-intron	ENST00000577038	ENST00000375677		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
intron-5UTR	ENST00000577038	ENST00000375678		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
intron-5UTR	ENST00000577038	ENST00000201961		TCGA	RV	BRCA	TCGA-C8-A273-01A	MMD	chr17	53485107	-	C20orf112	chr20	31115716	-
In-frame	ENST00000240488	ENST00000451320		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000240488	ENST00000429148		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000240488	ENST00000353617		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000240488	ENST00000405727		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000240488	ENST00000356064		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000240488	ENST00000511289		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
intron-3CDS	ENST00000503967	ENST00000451320		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000503967	ENST00000429148		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000503967	ENST00000353617		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000503967	ENST00000405727		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000503967	ENST00000356064		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
intron-3UTR	ENST00000503967	ENST00000511289		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
In-frame	ENST00000504860	ENST00000451320		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000504860	ENST00000429148		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000504860	ENST00000353617		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000504860	ENST00000405727		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000504860	ENST00000356064		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000504860	ENST00000511289		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MND1	chr4	154279774	+	ARFIP1	chr4	153784758	+
In-frame	ENST00000310614	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A07P-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000263187	ENST00000535300		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	MSH4	chr1	76288266	+	RABGGTB	chr1	76260898	+
5CDS-intron	ENST00000263187	ENST00000496055		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	MSH4	chr1	76288266	+	RABGGTB	chr1	76260898	+
5CDS-intron	ENST00000263187	ENST00000319942		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	MSH4	chr1	76288266	+	RABGGTB	chr1	76260898	+
5CDS-intron	ENST00000263187	ENST00000370826		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	MSH4	chr1	76288266	+	RABGGTB	chr1	76260898	+
Frame-shit	ENST00000255087	ENST00000525975		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
Frame-shit	ENST00000255087	ENST00000379016		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
Frame-shit	ENST00000255087	ENST00000303296		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
Frame-shit	ENST00000255087	ENST00000456517		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
5CDS-intron	ENST00000255087	ENST00000534262		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000540869	ENST00000525975		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000540869	ENST00000379016		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000540869	ENST00000303296		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000540869	ENST00000456517		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-intron	ENST00000540869	ENST00000534262		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000443940	ENST00000525975		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000443940	ENST00000379016		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000443940	ENST00000303296		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000443940	ENST00000456517		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-intron	ENST00000443940	ENST00000534262		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000544963	ENST00000525975		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000544963	ENST00000379016		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000544963	ENST00000303296		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-3CDS	ENST00000544963	ENST00000456517		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
intron-intron	ENST00000544963	ENST00000534262		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	MTL5	chr11	68480738	-	HIPK3	chr11	33373154	+
Frame-shit	ENST00000544440	ENST00000282003		TCGA	RV	BRCA	TCGA-E2-A14P-01A	MYCBP2	chr13	77807291	-	RNF219	chr13	79219132	-
Frame-shit	ENST00000407578	ENST00000282003		TCGA	RV	BRCA	TCGA-E2-A14P-01A	MYCBP2	chr13	77807291	-	RNF219	chr13	79219132	-
Frame-shit	ENST00000357337	ENST00000282003		TCGA	RV	BRCA	TCGA-E2-A14P-01A	MYCBP2	chr13	77807291	-	RNF219	chr13	79219132	-
5UTR-3CDS	ENST00000360084	ENST00000282003		TCGA	RV	BRCA	TCGA-E2-A14P-01A	MYCBP2	chr13	77807291	-	RNF219	chr13	79219132	-
intron-3CDS	ENST00000482517	ENST00000282003		TCGA	RV	BRCA	TCGA-E2-A14P-01A	MYCBP2	chr13	77807291	-	RNF219	chr13	79219132	-
Frame-shit	ENST00000288235	ENST00000267859		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
5CDS-intron	ENST00000288235	ENST00000478981		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
5CDS-intron	ENST00000288235	ENST00000607373		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
5CDS-intron	ENST00000288235	ENST00000415213		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
intron-3CDS	ENST00000558814	ENST00000267859		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
intron-intron	ENST00000558814	ENST00000478981		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
intron-intron	ENST00000558814	ENST00000607373		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
intron-intron	ENST00000558814	ENST00000415213		TCGA	RV	BRCA	TCGA-A8-A07W-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59964938	-
intron-3CDS	ENST00000311028	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000311028	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-3CDS	ENST00000395923	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000395923	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-3CDS	ENST00000220931	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000220931	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-3CDS	ENST00000521599	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000521599	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-3CDS	ENST00000522951	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000522951	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-3CDS	ENST00000519508	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
intron-5UTR	ENST00000519508	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-3CDS	ENST00000521371	ENST00000347898		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000565769		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000449109		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000545376		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000424767		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000568579		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000567758		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000569071		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
5UTR-5UTR	ENST00000521371	ENST00000539472		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	NCALD	chr8	102803090	-	SLC5A11	chr16	24873922	+
Frame-shit	ENST00000268712	ENST00000353139		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000268712	ENST00000360679		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000268712	ENST00000394406		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000268712	ENST00000335166		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000268712	ENST00000416895		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000268712	ENST00000361253		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000268712	ENST00000588142		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000268712	ENST00000589665		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395851	ENST00000353139		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395851	ENST00000360679		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395851	ENST00000394406		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395851	ENST00000335166		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395851	ENST00000416895		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395851	ENST00000361253		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395851	ENST00000588142		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395851	ENST00000589665		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395857	ENST00000353139		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395857	ENST00000360679		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395857	ENST00000394406		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000395857	ENST00000335166		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395857	ENST00000416895		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395857	ENST00000361253		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395857	ENST00000588142		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
5CDS-intron	ENST00000395857	ENST00000589665		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000395848	ENST00000353139		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000395848	ENST00000360679		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000395848	ENST00000394406		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000395848	ENST00000335166		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000395848	ENST00000416895		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000395848	ENST00000361253		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000395848	ENST00000588142		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000395848	ENST00000589665		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000583226	ENST00000353139		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000583226	ENST00000360679		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000583226	ENST00000394406		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-3CDS	ENST00000583226	ENST00000335166		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000583226	ENST00000416895		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000583226	ENST00000361253		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000583226	ENST00000588142		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
intron-intron	ENST00000583226	ENST00000589665		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	NCOR1	chr17	15960828	-	ACACA	chr17	35627752	-
Frame-shit	ENST00000356175	ENST00000318698		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
Frame-shit	ENST00000356175	ENST00000566473		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
5CDS-intron	ENST00000356175	ENST00000574292		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
Frame-shit	ENST00000358273	ENST00000318698		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
Frame-shit	ENST00000358273	ENST00000566473		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
5CDS-intron	ENST00000358273	ENST00000574292		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000431387	ENST00000318698		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000431387	ENST00000566473		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-intron	ENST00000431387	ENST00000574292		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000581113	ENST00000318698		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000581113	ENST00000566473		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-intron	ENST00000581113	ENST00000574292		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000417592	ENST00000318698		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000417592	ENST00000566473		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-intron	ENST00000417592	ENST00000574292		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000444181	ENST00000318698		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-3CDS	ENST00000444181	ENST00000566473		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
intron-intron	ENST00000444181	ENST00000574292		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	NF1	chr17	29592357	+	ANKFN1	chr17	54520204	+
Frame-shit	ENST00000356175	ENST00000360761		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000354983		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000352832		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000442258		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000416767		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000502264		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000515411		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000510115		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000503485		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000515165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000507510		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000514181		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000515765		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000507336		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000514079		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000507896		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000512389		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000513689		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000513964		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000505165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000507609		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000514717		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000510366		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000429973		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000359106		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000356175	ENST00000358244		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000360761		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000354983		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000352832		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000442258		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000416767		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000502264		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000515411		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000510115		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000503485		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000515165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000507510		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000514181		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000515765		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000507336		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000514079		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000507896		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000512389		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000513689		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000513964		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000505165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000507609		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000514717		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000510366		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000429973		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000359106		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
Frame-shit	ENST00000358273	ENST00000358244		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000360761		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000354983		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000352832		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000442258		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000416767		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000502264		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000515411		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000510115		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000503485		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000515165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000507510		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000514181		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000515765		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000507336		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000514079		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000507896		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000512389		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000513689		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000513964		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000505165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000507609		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000514717		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000510366		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000429973		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000359106		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000431387	ENST00000358244		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000360761		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000354983		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000352832		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000442258		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000416767		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000502264		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000515411		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000510115		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000503485		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000515165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000507510		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000514181		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000515765		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000507336		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000514079		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000507896		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000512389		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000513689		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000513964		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000505165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000507609		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000514717		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000510366		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000429973		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000359106		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000581113	ENST00000358244		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000360761		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000354983		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000352832		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000442258		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000416767		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000502264		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000515411		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000510115		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000503485		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000515165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000507510		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000514181		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000515765		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000507336		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000514079		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000507896		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000512389		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000513689		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000513964		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000505165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000507609		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000514717		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000510366		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000429973		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000359106		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000417592	ENST00000358244		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000360761		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000354983		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000352832		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000442258		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000416767		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000502264		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000515411		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000510115		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000503485		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000515165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000507510		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000514181		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000515765		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000507336		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000514079		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000507896		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000512389		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000513689		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000513964		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000505165		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000507609		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000514717		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000510366		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000429973		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000359106		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
intron-3CDS	ENST00000444181	ENST00000358244		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	NF1	chr17	29592357	+	CACNA1G	chr17	48676789	+
5UTR-intron	ENST00000586869	ENST00000392411		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000321280		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000428708		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000575712		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000575245		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000435091		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000321300		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-3UTR	ENST00000586869	ENST00000573894		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000586869	ENST00000416299		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000392411		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000321280		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000428708		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000575712		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000575245		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000435091		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000321300		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-3UTR	ENST00000442241	ENST00000573894		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000442241	ENST00000416299		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000392411		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000321280		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000428708		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000575712		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000575245		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000435091		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000321300		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-3UTR	ENST00000360831	ENST00000573894		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000360831	ENST00000416299		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000392411		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000321280		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000428708		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000575712		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000575245		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000435091		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000321300		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-3UTR	ENST00000593176	ENST00000573894		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
5UTR-intron	ENST00000593176	ENST00000416299		TCGA	RV	BRCA	TCGA-BH-A0BJ-01A	NLE1	chr17	33468998	-	BAIAP2	chr17	79027468	+
In-frame	ENST00000407008	ENST00000262593		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000407008	ENST00000395939		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
5CDS-intron	ENST00000407008	ENST00000491469		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
intron-3CDS	ENST00000583517	ENST00000262593		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
intron-5UTR	ENST00000583517	ENST00000395939		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
intron-intron	ENST00000583517	ENST00000491469		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
intron-3CDS	ENST00000582037	ENST00000262593		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
intron-5UTR	ENST00000582037	ENST00000395939		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
intron-intron	ENST00000582037	ENST00000491469		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	NLK	chr17	26495683	+	DOK5	chr20	53171472	+
In-frame	ENST00000284548	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000284548	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
In-frame	ENST00000570156	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000570156	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5UTR-3CDS	ENST00000366709	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5UTR-intron	ENST00000366709	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
In-frame	ENST00000422127	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000422127	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5UTR-3CDS	ENST00000366707	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
5UTR-intron	ENST00000366707	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
intron-3CDS	ENST00000359599	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
intron-intron	ENST00000359599	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
intron-3CDS	ENST00000602685	ENST00000251296		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
intron-intron	ENST00000602685	ENST00000473951		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	OBSCN	chr1	228402799	+	IGSF21	chr1	18554392	+
Frame-shit	ENST00000355520	ENST00000338702		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
Frame-shit	ENST00000355520	ENST00000542639		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
5CDS-3UTR	ENST00000355520	ENST00000497485		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
Frame-shit	ENST00000540071	ENST00000338702		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
Frame-shit	ENST00000540071	ENST00000542639		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
5CDS-3UTR	ENST00000540071	ENST00000497485		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
intron-3CDS	ENST00000484842	ENST00000338702		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
intron-3CDS	ENST00000484842	ENST00000542639		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
intron-3UTR	ENST00000484842	ENST00000497485		TCGA	RV	BRCA	TCGA-C8-A273-01A	OPHN1	chrX	67412761	-	MAOA	chrX	43590488	+
5UTR-3CDS	ENST00000313367	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000313367	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-intron	ENST00000313367	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000431825	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000431825	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-intron	ENST00000431825	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000352860	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000352860	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-intron	ENST00000352860	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000353930	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-3CDS	ENST00000353930	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5UTR-intron	ENST00000353930	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000396431	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000396431	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-intron	ENST00000396431	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000409069	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000409069	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-intron	ENST00000409069	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000396429	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000396429	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-intron	ENST00000396429	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000487020	ENST00000333743		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-3CDS	ENST00000487020	ENST00000555083		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
intron-intron	ENST00000487020	ENST00000554786		TCGA	RV	BRCA	TCGA-BH-A208-01A	OSBPL3	chr7	25019505	-	GABRG3	chr15	27725796	+
5CDS-5UTR	ENST00000263650	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000263650	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000263650	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000389989	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000389989	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000389989	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000525498	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000525498	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000525498	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-5UTR	ENST00000542243	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-3UTR	ENST00000542243	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-5UTR	ENST00000542243	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000348039	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000348039	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000348039	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-5UTR	ENST00000478260	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-3UTR	ENST00000478260	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-5UTR	ENST00000478260	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-5UTR	ENST00000528124	ENST00000349457		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-3UTR	ENST00000528124	ENST00000394361		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
intron-5UTR	ENST00000528124	ENST00000340339		TCGA	RV	BRCA	TCGA-AO-A129-01A	OSBPL5	chr11	3140777	-	GPR114	chr16	57595968	+
5UTR-3CDS	ENST00000393249	ENST00000283228		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393249	ENST00000440835		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393249	ENST00000537619		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393249	ENST00000378778		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393249	ENST00000342084		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393249	ENST00000549308		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000261183	ENST00000283228		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261183	ENST00000440835		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261183	ENST00000537619		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261183	ENST00000378778		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261183	ENST00000342084		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261183	ENST00000549308		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000393250	ENST00000283228		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393250	ENST00000440835		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393250	ENST00000537619		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393250	ENST00000378778		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393250	ENST00000342084		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393250	ENST00000549308		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000552178	ENST00000283228		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552178	ENST00000440835		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552178	ENST00000537619		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552178	ENST00000378778		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552178	ENST00000342084		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552178	ENST00000549308		TCGA	RV	BRCA	TCGA-GM-A2DI-01A	OSBPL8	chr12	76953177	-	PTPRR	chr12	71158558	-
5CDS-5UTR	ENST00000358127	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000358127	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000358127	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000358127	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000523241	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000523241	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000523241	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000523241	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520154	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520154	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520154	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520154	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377852	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377852	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377852	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377852	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377853	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377853	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377853	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377853	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000522003	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000522003	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000522003	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000522003	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520281	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520281	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520281	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000520281	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000414447	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000414447	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000414447	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000414447	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000523145	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000523145	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000523145	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5UTR-5UTR	ENST00000523145	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000446742	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000446742	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000446742	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000446742	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377847	ENST00000309134		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377847	ENST00000534025		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377847	ENST00000525069		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
5CDS-5UTR	ENST00000377847	ENST00000528117		TCGA	RV	BRCA	TCGA-E2-A15S-01A	PAX5	chr9	37033983	-	TMEM9B	chr11	8977845	-
In-frame	ENST00000393958	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
Frame-shit	ENST00000393958	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
Frame-shit	ENST00000393960	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
In-frame	ENST00000393960	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
In-frame	ENST00000355677	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
Frame-shit	ENST00000355677	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
In-frame	ENST00000524491	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
Frame-shit	ENST00000524491	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
intron-3CDS	ENST00000529047	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
intron-3CDS	ENST00000529047	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
Frame-shit	ENST00000393955	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
In-frame	ENST00000393955	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
intron-3CDS	ENST00000528224	ENST00000378454		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
intron-3CDS	ENST00000528224	ENST00000378450		TCGA	RV	BRCA	TCGA-A8-A081-01A	PC	chr11	66631245	-	DCDC2	chr6	24205330	-
In-frame	ENST00000455147	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000455147	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000455147	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000266563	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000266563	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000266563	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
3UTR-3CDS	ENST00000545220	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
3UTR-3CDS	ENST00000545220	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
3UTR-3UTR	ENST00000545220	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000434354	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000434354	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000434354	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000420616	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000420616	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000420616	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000412720	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000412720	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000412720	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000266564	ENST00000266546		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000266564	ENST00000537408		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000266564	ENST00000331148		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PEX5	chr12	7344296	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000335312	ENST00000245907		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
5CDS-intron	ENST00000335312	ENST00000599668		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
Frame-shit	ENST00000539785	ENST00000245907		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
5CDS-intron	ENST00000539785	ENST00000599668		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
Frame-shit	ENST00000589578	ENST00000245907		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
5CDS-intron	ENST00000589578	ENST00000599668		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
Frame-shit	ENST00000537021	ENST00000245907		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
5CDS-intron	ENST00000537021	ENST00000599668		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
intron-3CDS	ENST00000587482	ENST00000245907		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
intron-intron	ENST00000587482	ENST00000599668		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	PIP5K1C	chr19	3647336	-	C3	chr19	6719414	-
5CDS-5UTR	ENST00000534749	ENST00000351960		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000534749	ENST00000358965		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000534749	ENST00000393695		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-intron	ENST00000534749	ENST00000543450		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000436757	ENST00000351960		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000436757	ENST00000358965		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000436757	ENST00000393695		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-intron	ENST00000436757	ENST00000543450		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000356404	ENST00000351960		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000356404	ENST00000358965		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-5UTR	ENST00000356404	ENST00000393695		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
5CDS-intron	ENST00000356404	ENST00000543450		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
intron-5UTR	ENST00000526450	ENST00000351960		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
intron-5UTR	ENST00000526450	ENST00000358965		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
intron-5UTR	ENST00000526450	ENST00000393695		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
intron-intron	ENST00000526450	ENST00000543450		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	PITPNM1	chr11	67271574	-	NUMA1	chr11	71747021	-
In-frame	ENST00000316005	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
In-frame	ENST00000316005	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
5CDS-intron	ENST00000316005	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
In-frame	ENST00000370521	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
In-frame	ENST00000370521	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
5CDS-intron	ENST00000370521	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
5UTR-3CDS	ENST00000370505	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
5UTR-3CDS	ENST00000370505	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
5UTR-intron	ENST00000370505	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
In-frame	ENST00000370513	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
In-frame	ENST00000370513	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
5CDS-intron	ENST00000370513	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
intron-3CDS	ENST00000544045	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
intron-3CDS	ENST00000544045	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
intron-intron	ENST00000544045	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
intron-3CDS	ENST00000495119	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
intron-3CDS	ENST00000495119	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
intron-intron	ENST00000495119	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PKN2	chr1	89150311	+	COL24A1	chr1	86453337	-
In-frame	ENST00000263088	ENST00000381638		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	PLD2	chr17	4712846	+	ZZEF1	chr17	4009103	-
5CDS-5UTR	ENST00000263088	ENST00000574474		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	PLD2	chr17	4712846	+	ZZEF1	chr17	4009103	-
In-frame	ENST00000572940	ENST00000381638		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	PLD2	chr17	4712846	+	ZZEF1	chr17	4009103	-
5CDS-5UTR	ENST00000572940	ENST00000574474		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	PLD2	chr17	4712846	+	ZZEF1	chr17	4009103	-
Frame-shit	ENST00000395135	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000395135	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000395135	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000395132	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000395132	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-intron	ENST00000395132	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000268059	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000268059	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000268059	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000354026	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000354026	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000354026	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000268058	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000268058	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000268058	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000565898	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000565898	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000565898	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000569477	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000569477	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000569477	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000569965	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000569965	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000569965	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000567543	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000567543	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-intron	ENST00000567543	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000435786	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000435786	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000435786	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000436891	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000436891	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000436891	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000564428	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000564428	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000564428	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000359928	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000359928	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-intron	ENST00000359928	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000563500	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
Frame-shit	ENST00000563500	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
5CDS-intron	ENST00000563500	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000569161	ENST00000382865		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-3CDS	ENST00000569161	ENST00000511885		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
intron-intron	ENST00000569161	ENST00000515357		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PML	chr15	74325755	+	POLN	chr4	2097660	-
In-frame	ENST00000263433	ENST00000367194		TCGA	RV	BRCA	TCGA-A7-A6VW-01A	PPP1R12C	chr19	55610152	-	KISS1	chr1	204159925	-
In-frame	ENST00000376393	ENST00000367194		TCGA	RV	BRCA	TCGA-A7-A6VW-01A	PPP1R12C	chr19	55610152	-	KISS1	chr1	204159925	-
In-frame	ENST00000435544	ENST00000367194		TCGA	RV	BRCA	TCGA-A7-A6VW-01A	PPP1R12C	chr19	55610152	-	KISS1	chr1	204159925	-
In-frame	ENST00000234310	ENST00000317907		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	PPP3R1	chr2	68479257	-	TTC27	chr2	33007693	+
intron-3CDS	ENST00000409752	ENST00000317907		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	PPP3R1	chr2	68479257	-	TTC27	chr2	33007693	+
intron-3CDS	ENST00000409377	ENST00000317907		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	PPP3R1	chr2	68479257	-	TTC27	chr2	33007693	+
Frame-shit	ENST00000400556	ENST00000376042		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400556	ENST00000376038		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400556	ENST00000348603		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400556	ENST00000276014		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400556	ENST00000493507		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
Frame-shit	ENST00000400555	ENST00000376042		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400555	ENST00000376038		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400555	ENST00000348603		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400555	ENST00000276014		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000400555	ENST00000493507		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
intron-3CDS	ENST00000580583	ENST00000376042		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
intron-intron	ENST00000580583	ENST00000376038		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
intron-intron	ENST00000580583	ENST00000348603		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
intron-intron	ENST00000580583	ENST00000276014		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
intron-intron	ENST00000580583	ENST00000493507		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PPP4R1	chr18	9614476	-	CCNB3	chrX	50051505	+
5CDS-intron	ENST00000338368	ENST00000547691		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000338368	ENST00000552810		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000338368	ENST00000397838		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000338368	ENST00000309041		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000314191	ENST00000547691		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000314191	ENST00000552810		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000314191	ENST00000397838		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000314191	ENST00000309041		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5UTR-intron	ENST00000523565	ENST00000547691		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5UTR-intron	ENST00000523565	ENST00000552810		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5UTR-intron	ENST00000523565	ENST00000397838		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5UTR-intron	ENST00000523565	ENST00000309041		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PRKDC	chr8	48744375	-	CEP290	chr12	88533341	-
5CDS-intron	ENST00000216455	ENST00000371754		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000216455	ENST00000469991		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000216455	ENST00000371752		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000216455	ENST00000396105		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000412908	ENST00000371754		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000412908	ENST00000469991		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000412908	ENST00000371752		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000412908	ENST00000396105		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000557508	ENST00000371754		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000557508	ENST00000469991		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000557508	ENST00000371752		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000557508	ENST00000396105		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000554456	ENST00000371754		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000554456	ENST00000469991		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000554456	ENST00000371752		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000554456	ENST00000396105		TCGA	RV	BRCA	TCGA-OL-A5RU-01A	PSMA3	chr14	58738724	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000451246	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000451246	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000451246	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000380306	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000380306	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000380306	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000416079	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000416079	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000416079	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000438998	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000438998	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000438998	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000380305	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000380305	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000380305	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000419065	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000419065	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000419065	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000473000	ENST00000429723		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000473000	ENST00000379715		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000473000	ENST00000507463		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	PSMG4	chr6	3259430	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000389413	ENST00000482812		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389413	ENST00000430044		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389413	ENST00000452146		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389413	ENST00000434507		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389413	ENST00000415421		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389413	ENST00000320311		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389413	ENST00000422997		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000482812		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000430044		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000452146		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000434507		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000415421		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000320311		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000409483	ENST00000422997		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000482812		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000430044		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000452146		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000434507		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000415421		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000320311		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389416	ENST00000422997		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000482812		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000430044		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000452146		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000434507		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000415421		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000320311		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000389418	ENST00000422997		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000482812		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000430044		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000452146		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000434507		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000415421		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000320311		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-intron	ENST00000404321	ENST00000422997		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	PTPRN2	chr7	157959623	-	GALNT11	chr7	151797883	+
5CDS-5UTR	ENST00000275262	ENST00000278314		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000275262	ENST00000536068		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000275262	ENST00000531083		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000392127	ENST00000278314		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000392127	ENST00000536068		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000392127	ENST00000531083		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000453779	ENST00000278314		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000453779	ENST00000536068		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000453779	ENST00000531083		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000361752	ENST00000278314		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000361752	ENST00000536068		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000361752	ENST00000531083		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000361195	ENST00000278314		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000361195	ENST00000536068		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000361195	ENST00000531083		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000424802	ENST00000278314		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000424802	ENST00000536068		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-5UTR	ENST00000424802	ENST00000531083		TCGA	RV	BRCA	TCGA-A2-A0CM-01A	QKI	chr6	163836367	+	ZNF214	chr11	7024086	-
5CDS-intron	ENST00000310653	ENST00000449833		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000310653	ENST00000409161		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000310653	ENST00000423696		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000310653	ENST00000338508		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000310653	ENST00000409530		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000310653	ENST00000449116		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000310653	ENST00000357171		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000310653	ENST00000468619		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000449833		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000409161		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000423696		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000338508		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000409530		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000449116		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000336083	ENST00000357171		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000336083	ENST00000468619		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000449833		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000409161		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000423696		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000338508		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000409530		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000449116		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000536566	ENST00000357171		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000536566	ENST00000468619		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000449833		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000409161		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000423696		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000338508		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000409530		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000449116		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000541588	ENST00000357171		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
intron-5UTR	ENST00000541588	ENST00000468619		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	RAB6A	chr11	73427296	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000264926	ENST00000469710		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000264926	ENST00000493101		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000264926	ENST00000264468		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000264926	ENST00000330540		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
5CDS-3UTR	ENST00000264926	ENST00000483949		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
5CDS-5UTR	ENST00000264926	ENST00000393627		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
intron-intron	ENST00000495087	ENST00000469710		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
intron-intron	ENST00000495087	ENST00000493101		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
intron-intron	ENST00000495087	ENST00000264468		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
intron-intron	ENST00000495087	ENST00000330540		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000495087	ENST00000483949		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000495087	ENST00000393627		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	RAD18	chr3	8940578	-	CD86	chr3	121810448	+
Frame-shit	ENST00000374761	ENST00000337107		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5CDS-intron	ENST00000374761	ENST00000473526		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
Frame-shit	ENST00000290101	ENST00000337107		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5CDS-intron	ENST00000290101	ENST00000473526		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
Frame-shit	ENST00000374763	ENST00000337107		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5CDS-intron	ENST00000374763	ENST00000473526		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
In-frame	ENST00000374765	ENST00000337107		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5CDS-intron	ENST00000374765	ENST00000473526		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
Frame-shit	ENST00000542643	ENST00000337107		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5CDS-intron	ENST00000542643	ENST00000473526		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5UTR-3CDS	ENST00000374757	ENST00000337107		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
5UTR-intron	ENST00000374757	ENST00000473526		TCGA	RV	BRCA	TCGA-A7-A26F-01A	RAP1GAP	chr1	21943799	-	CELA3B	chr1	22304862	+
Frame-shit	ENST00000374140	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374140	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374140	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374140	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5CDS-intron	ENST00000374140	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000350696	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000350696	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000350696	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000350696	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5CDS-intron	ENST00000350696	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000317613	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000317613	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000317613	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000317613	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5CDS-intron	ENST00000317613	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000343817	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000343817	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000343817	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000343817	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5CDS-intron	ENST00000343817	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000394646	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000394646	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000394646	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000394646	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5CDS-intron	ENST00000394646	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374136	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374136	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374136	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
Frame-shit	ENST00000374136	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5CDS-intron	ENST00000374136	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5UTR-3CDS	ENST00000462143	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5UTR-3CDS	ENST00000462143	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5UTR-3CDS	ENST00000462143	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5UTR-3CDS	ENST00000462143	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
5UTR-intron	ENST00000462143	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000463806	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000463806	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000463806	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000463806	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-intron	ENST00000463806	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000342620	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000342620	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000342620	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000342620	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-intron	ENST00000342620	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000374134	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000374134	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000374134	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000374134	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-intron	ENST00000374134	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000462403	ENST00000381226		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000462403	ENST00000381213		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000462403	ENST00000381199		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-3CDS	ENST00000462403	ENST00000409421		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-intron	ENST00000462403	ENST00000546593		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RGS3	chr9	116299198	+	MIER3	chr5	56224688	-
intron-intron	ENST00000426256	ENST00000475548		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000426256	ENST00000358743		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000426256	ENST00000347557		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000426256	ENST00000333137		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000426256	ENST00000404574		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000326132	ENST00000475548		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000326132	ENST00000358743		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000326132	ENST00000347557		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000326132	ENST00000333137		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000326132	ENST00000404574		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000266252	ENST00000475548		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000266252	ENST00000358743		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000266252	ENST00000347557		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000266252	ENST00000333137		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
intron-intron	ENST00000266252	ENST00000404574		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	RNF185	chr22	31591567	+	SMTN	chr22	31476436	+
In-frame	ENST00000508628	ENST00000361193		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000508628	ENST00000411502		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000508628	ENST00000546047		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000508628	ENST00000571602		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000508628	ENST00000572725		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000456466	ENST00000361193		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000456466	ENST00000411502		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000456466	ENST00000546047		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000456466	ENST00000571602		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000456466	ENST00000572725		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000582970	ENST00000361193		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000582970	ENST00000411502		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000582970	ENST00000546047		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000582970	ENST00000571602		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000582970	ENST00000572725		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000319921	ENST00000361193		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000319921	ENST00000411502		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000319921	ENST00000546047		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000319921	ENST00000571602		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000319921	ENST00000572725		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000336301	ENST00000361193		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000336301	ENST00000411502		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000336301	ENST00000546047		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-intron	ENST00000336301	ENST00000571602		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-intron	ENST00000336301	ENST00000572725		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000427003	ENST00000361193		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000427003	ENST00000411502		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000427003	ENST00000546047		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-intron	ENST00000427003	ENST00000571602		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
intron-intron	ENST00000427003	ENST00000572725		TCGA	RV	BRCA	TCGA-D8-A27R-01A	RNF213	chr17	78237577	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000265678	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000265678	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000265678	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000265678	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000265678	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000265678	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000265678	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000510118	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000503859	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000481261	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
5CDS-intron	ENST00000405189	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000366863	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000451246		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000380306		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000416079		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000438998		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000380305		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000419065		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-intron	ENST00000509742	ENST00000473000		TCGA	RV	BRCA	TCGA-E2-A15D-01A	RPS6KA2	chr6	166872937	-	PSMG4	chr6	3263918	+
intron-3CDS	ENST00000537330	ENST00000508628		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000537330	ENST00000456466		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000537330	ENST00000582970		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000537330	ENST00000319921		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000537330	ENST00000336301		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000537330	ENST00000427003		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
In-frame	ENST00000570891	ENST00000508628		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000570891	ENST00000456466		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000570891	ENST00000582970		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000570891	ENST00000319921		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000570891	ENST00000336301		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000570891	ENST00000427003		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
In-frame	ENST00000306801	ENST00000508628		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000306801	ENST00000456466		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000306801	ENST00000582970		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000306801	ENST00000319921		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000306801	ENST00000336301		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000306801	ENST00000427003		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
In-frame	ENST00000544334	ENST00000508628		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000544334	ENST00000456466		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000544334	ENST00000582970		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000544334	ENST00000319921		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000544334	ENST00000336301		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
5CDS-intron	ENST00000544334	ENST00000427003		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-3CDS	ENST00000575542	ENST00000508628		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000575542	ENST00000456466		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000575542	ENST00000582970		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000575542	ENST00000319921		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000575542	ENST00000336301		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
intron-intron	ENST00000575542	ENST00000427003		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	RPTOR	chr17	78617610	+	RNF213	chr17	78341548	+
Frame-shit	ENST00000308488	ENST00000332830		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
Frame-shit	ENST00000308488	ENST00000577226		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
Frame-shit	ENST00000308488	ENST00000268756		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
5CDS-intron	ENST00000308488	ENST00000582655		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
Frame-shit	ENST00000360355	ENST00000332830		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
Frame-shit	ENST00000360355	ENST00000577226		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
Frame-shit	ENST00000360355	ENST00000268756		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
5CDS-intron	ENST00000360355	ENST00000582655		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
intron-3CDS	ENST00000480887	ENST00000332830		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
intron-3CDS	ENST00000480887	ENST00000577226		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
intron-3CDS	ENST00000480887	ENST00000268756		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
intron-intron	ENST00000480887	ENST00000582655		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
5UTR-3CDS	ENST00000530604	ENST00000332830		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
5UTR-3CDS	ENST00000530604	ENST00000577226		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
5UTR-3CDS	ENST00000530604	ENST00000268756		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
5UTR-intron	ENST00000530604	ENST00000582655		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	RSF1	chr11	77531574	-	PHF12	chr17	27254081	-
In-frame	ENST00000366574	ENST00000366592		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-intron	ENST00000366574	ENST00000366591		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-3UTR	ENST00000366574	ENST00000477559		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
In-frame	ENST00000360064	ENST00000366592		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-intron	ENST00000360064	ENST00000366591		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-3UTR	ENST00000360064	ENST00000477559		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
In-frame	ENST00000542537	ENST00000366592		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-intron	ENST00000542537	ENST00000366591		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-3UTR	ENST00000542537	ENST00000477559		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
intron-3CDS	ENST00000609119	ENST00000366592		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
intron-intron	ENST00000609119	ENST00000366591		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
intron-3UTR	ENST00000609119	ENST00000477559		TCGA	RV	BRCA	TCGA-A8-A07C-01A	RYR2	chr1	237780786	+	GPR137B	chr1	236368426	+
5CDS-intron	ENST00000256190	ENST00000527350		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000256190	ENST00000278919		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000256190	ENST00000366139		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000256190	ENST00000524435		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
intron-intron	ENST00000527019	ENST00000527350		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
intron-intron	ENST00000527019	ENST00000278919		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
intron-intron	ENST00000527019	ENST00000366139		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
intron-intron	ENST00000527019	ENST00000524435		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	SBF2	chr11	10215449	-	FEZ1	chr11	125333466	-
In-frame	ENST00000256190	ENST00000462284		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000356290		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000540827		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000258149		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000428863		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000393412		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000258148		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000544561		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000393410		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000393413		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000517852		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000545204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000350057		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000360430		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000299252		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000348801		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000478070		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-intron	ENST00000256190	ENST00000544125		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-3CDS	ENST00000527019	ENST00000462284		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000356290		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000540827		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000258149		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000428863		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000393412		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000258148		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000544561		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000393410		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000393413		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000517852		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000545204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000350057		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000360430		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000299252		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000348801		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000478070		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
intron-intron	ENST00000527019	ENST00000544125		TCGA	RV	BRCA	TCGA-A8-A06U-01A	SBF2	chr11	9983504	-	MDM2	chr12	69210592	+
5CDS-3UTR	ENST00000370010	ENST00000464978		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000370010	ENST00000369556		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000370010	ENST00000544441		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000370010	ENST00000369552		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000370010	ENST00000369557		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000370014	ENST00000464978		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000370014	ENST00000369556		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000370014	ENST00000544441		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000370014	ENST00000369552		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000370014	ENST00000369557		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000447266	ENST00000464978		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000447266	ENST00000369556		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000447266	ENST00000544441		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000447266	ENST00000369552		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000447266	ENST00000369557		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-3UTR	ENST00000541192	ENST00000464978		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-3UTR	ENST00000541192	ENST00000369556		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-intron	ENST00000541192	ENST00000544441		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-intron	ENST00000541192	ENST00000369552		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-intron	ENST00000541192	ENST00000369557		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000327284	ENST00000464978		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000327284	ENST00000369556		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000327284	ENST00000544441		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000327284	ENST00000369552		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000327284	ENST00000369557		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-3UTR	ENST00000436928	ENST00000464978		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-3UTR	ENST00000436928	ENST00000369556		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-intron	ENST00000436928	ENST00000544441		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-intron	ENST00000436928	ENST00000369552		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
intron-intron	ENST00000436928	ENST00000369557		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SENP6	chr6	76312292	+	SLC35A1	chr6	88210226	+
3UTR-3CDS	ENST00000255175	ENST00000262120		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
3UTR-3CDS	ENST00000255175	ENST00000581641		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
intron-3CDS	ENST00000342374	ENST00000262120		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
intron-3CDS	ENST00000342374	ENST00000581641		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
intron-3CDS	ENST00000541235	ENST00000262120		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
intron-3CDS	ENST00000541235	ENST00000581641		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
intron-3CDS	ENST00000468234	ENST00000262120		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
intron-3CDS	ENST00000468234	ENST00000581641		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SERINC3	chr20	43128899	-	TWSG1	chr18	9396278	+
5CDS-intron	ENST00000342415	ENST00000419617		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SNRNP48	chr6	7594392	+	STK3	chr8	99896062	-
5CDS-5UTR	ENST00000342415	ENST00000523601		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SNRNP48	chr6	7594392	+	STK3	chr8	99896062	-
5CDS-intron	ENST00000342415	ENST00000521768		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SNRNP48	chr6	7594392	+	STK3	chr8	99896062	-
In-frame	ENST00000575142	ENST00000358183		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000414043		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000361571		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000572543		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000381311		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000348066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5CDS-5UTR	ENST00000575142	ENST00000571831		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000358183		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000414043		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000361571		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000572543		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000381311		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000348066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5CDS-5UTR	ENST00000206020	ENST00000571831		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000358183		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000414043		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000361571		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000572543		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000381311		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000348066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-5UTR	ENST00000573366	ENST00000571831		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000358183		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000414043		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000361571		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000572543		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000381311		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000348066		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-5UTR	ENST00000571023	ENST00000571831		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000274008	ENST00000394980		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
In-frame	ENST00000274008	ENST00000264790		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
In-frame	ENST00000274008	ENST00000394981		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
In-frame	ENST00000274008	ENST00000508372		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000394980		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000264790		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000394981		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000508372		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123868643	+	MMRN1	chr4	90872756	+
5CDS-intron	ENST00000265087	ENST00000264818		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265087	ENST00000524462		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265087	ENST00000525621		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265087	ENST00000529370		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265087	ENST00000529422		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
intron-intron	ENST00000520593	ENST00000264818		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
intron-intron	ENST00000520593	ENST00000524462		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
intron-intron	ENST00000520593	ENST00000525621		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
intron-intron	ENST00000520593	ENST00000529370		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
intron-intron	ENST00000520593	ENST00000529422		TCGA	RV	BRCA	TCGA-A8-A06Y-01A	STC2	chr5	172741716	-	TYK2	chr19	10491352	-
5UTR-3CDS	ENST00000314616	ENST00000261708		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	SUPT6H	chr17	26989360	+	UTP6	chr17	30202432	-
5UTR-intron	ENST00000314616	ENST00000490218		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	SUPT6H	chr17	26989360	+	UTP6	chr17	30202432	-
5UTR-3CDS	ENST00000347486	ENST00000261708		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	SUPT6H	chr17	26989360	+	UTP6	chr17	30202432	-
5UTR-intron	ENST00000347486	ENST00000490218		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	SUPT6H	chr17	26989360	+	UTP6	chr17	30202432	-
Frame-shit	ENST00000394395	ENST00000376217		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
Frame-shit	ENST00000394395	ENST00000315938		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
5CDS-intron	ENST00000394395	ENST00000527489		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
intron-3CDS	ENST00000586023	ENST00000376217		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
intron-3CDS	ENST00000586023	ENST00000315938		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
intron-intron	ENST00000586023	ENST00000527489		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
Frame-shit	ENST00000225396	ENST00000376217		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
Frame-shit	ENST00000225396	ENST00000315938		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
5CDS-intron	ENST00000225396	ENST00000527489		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
intron-3CDS	ENST00000417170	ENST00000376217		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
intron-3CDS	ENST00000417170	ENST00000315938		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
intron-intron	ENST00000417170	ENST00000527489		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
3UTR-3CDS	ENST00000591992	ENST00000376217		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
3UTR-3CDS	ENST00000591992	ENST00000315938		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
3UTR-intron	ENST00000591992	ENST00000527489		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TADA2A	chr17	35827629	+	GDPD4	chr11	76938961	-
In-frame	ENST00000252996	ENST00000360469		TCGA	RV	BRCA	TCGA-A7-A13F-01A	TAF4	chr20	60639507	-	CDH4	chr20	59829882	+
5CDS-intron	ENST00000252996	ENST00000543233		TCGA	RV	BRCA	TCGA-A7-A13F-01A	TAF4	chr20	60639507	-	CDH4	chr20	59829882	+
intron-3CDS	ENST00000609045	ENST00000360469		TCGA	RV	BRCA	TCGA-A7-A13F-01A	TAF4	chr20	60639507	-	CDH4	chr20	59829882	+
intron-intron	ENST00000609045	ENST00000543233		TCGA	RV	BRCA	TCGA-A7-A13F-01A	TAF4	chr20	60639507	-	CDH4	chr20	59829882	+
5CDS-3UTR	ENST00000261716	ENST00000583215		TCGA	RV	BRCA	TCGA-BH-A18G-01A	TAOK1	chr17	27794234	+	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000261716	ENST00000323372		TCGA	RV	BRCA	TCGA-BH-A18G-01A	TAOK1	chr17	27794234	+	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000536202	ENST00000583215		TCGA	RV	BRCA	TCGA-BH-A18G-01A	TAOK1	chr17	27794234	+	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000536202	ENST00000323372		TCGA	RV	BRCA	TCGA-BH-A18G-01A	TAOK1	chr17	27794234	+	PIPOX	chr17	27371877	+
Frame-shit	ENST00000534894	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000534894	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000534894	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000534894	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000534894	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000534894	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000534894	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000534894	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000534894	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000534894	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000534894	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000534894	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000534894	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000534894	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000536810	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000536810	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000536810	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000536810	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000536810	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000536810	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000536810	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000536810	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000545257	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000545257	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000545257	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000545257	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000545257	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000545257	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000545257	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000545257	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355995	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355995	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355995	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355995	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355995	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355995	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355995	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000355995	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000543371	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000543371	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000543371	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000543371	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000543371	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000543371	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000543371	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000543371	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000355717	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355717	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355717	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355717	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355717	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355717	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000355717	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000355717	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000538897	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000538897	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000538897	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000538897	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000538897	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000538897	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000538897	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000538897	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000349937	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000349937	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000349937	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000349937	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000349937	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000349937	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000349937	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000349937	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369397	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369397	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369397	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369397	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369397	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369397	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369397	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000369397	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000352065	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000352065	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000352065	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000352065	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000352065	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000352065	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000352065	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000352065	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
Frame-shit	ENST00000369395	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369395	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369395	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369395	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369395	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369395	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-5UTR	ENST00000369395	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5CDS-3UTR	ENST00000369395	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000542695	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-5UTR	ENST00000542695	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-5UTR	ENST00000542695	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-5UTR	ENST00000542695	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-5UTR	ENST00000542695	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-5UTR	ENST00000542695	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-5UTR	ENST00000542695	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3UTR	ENST00000542695	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369389	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369389	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369389	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369389	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369389	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369389	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369389	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3UTR	ENST00000369389	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000369386	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369386	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369386	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369386	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369386	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369386	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000369386	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3UTR	ENST00000369386	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000369005		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000513429		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000515273		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000515603		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000453444		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000358010		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3CDS	ENST00000466338	ENST00000334433		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000466338	ENST00000369001		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000466338	ENST00000369000		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000466338	ENST00000360561		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000466338	ENST00000368999		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000466338	ENST00000369004		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-5UTR	ENST00000466338	ENST00000260733		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
intron-3UTR	ENST00000466338	ENST00000493951		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	TCF7L2	chr10	114799885	+	TACC2	chr10	123954555	+
5UTR-3CDS	ENST00000361905	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000361905	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000361905	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000361905	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000361905	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527636	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527636	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527636	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527636	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527636	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527575	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527575	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527575	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527575	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527575	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000334310	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000334310	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000334310	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000334310	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000334310	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000361985	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000361985	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000361985	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000361985	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000361985	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000526600	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000526600	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000526600	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000526600	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000526600	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-01A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
Frame-shit	ENST00000355327	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000355327	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000355327	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
In-frame	ENST00000355327	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000355327	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
5CDS-3UTR	ENST00000355327	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
5CDS-3UTR	ENST00000355327	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000261862	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000261862	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000261862	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
In-frame	ENST00000261862	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
Frame-shit	ENST00000261862	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
5CDS-3UTR	ENST00000261862	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
5CDS-3UTR	ENST00000261862	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000357769	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000357769	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000357769	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000357769	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000357769	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3UTR	ENST00000357769	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3UTR	ENST00000357769	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000567838	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000567838	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000567838	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000567838	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3CDS	ENST00000567838	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3UTR	ENST00000567838	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
intron-3UTR	ENST00000567838	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A0YH-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71341748	+
5UTR-3CDS	ENST00000286827	ENST00000375771		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000286827	ENST00000375766		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000286827	ENST00000400773		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000286827	ENST00000441801		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000286827	ENST00000332305		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3UTR	ENST00000286827	ENST00000509138		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000541036	ENST00000375771		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000541036	ENST00000375766		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000541036	ENST00000400773		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-intron	ENST00000541036	ENST00000441801		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-intron	ENST00000541036	ENST00000332305		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3UTR	ENST00000541036	ENST00000509138		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000469412	ENST00000375771		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000469412	ENST00000375766		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000469412	ENST00000400773		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000469412	ENST00000441801		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000469412	ENST00000332305		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3UTR	ENST00000469412	ENST00000509138		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-5UTR	ENST00000248244	ENST00000588552		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000262963		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000372412		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000348075		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000357368		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000353284		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000587303		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000588012		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-5UTR	ENST00000248244	ENST00000592099		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5UTR-intron	ENST00000248244	ENST00000590509		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TICAM1	chr19	4831626	-	PTPRS	chr19	5265207	-
5CDS-5UTR	ENST00000294543	ENST00000400520		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000294543	ENST00000496748		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000294543	ENST00000375111		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000375127	ENST00000400520		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000375127	ENST00000496748		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000375127	ENST00000375111		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5UTR-5UTR	ENST00000489814	ENST00000400520		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5UTR-5UTR	ENST00000489814	ENST00000496748		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5UTR-5UTR	ENST00000489814	ENST00000375111		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000375122	ENST00000400520		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000375122	ENST00000496748		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000375122	ENST00000375111		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	TMCO4	chr1	20027261	-	PLA2G2A	chr1	20305372	-
Frame-shit	ENST00000416379	ENST00000327442		TCGA	RV	BRCA	TCGA-A2-A1G0-01A	TMEM130	chr7	98467400	-	KPNA7	chr7	98790724	-
Frame-shit	ENST00000339375	ENST00000327442		TCGA	RV	BRCA	TCGA-A2-A1G0-01A	TMEM130	chr7	98467400	-	KPNA7	chr7	98790724	-
intron-3CDS	ENST00000450876	ENST00000327442		TCGA	RV	BRCA	TCGA-A2-A1G0-01A	TMEM130	chr7	98467400	-	KPNA7	chr7	98790724	-
intron-3CDS	ENST00000474857	ENST00000327442		TCGA	RV	BRCA	TCGA-A2-A1G0-01A	TMEM130	chr7	98467400	-	KPNA7	chr7	98790724	-
Frame-shit	ENST00000345589	ENST00000327442		TCGA	RV	BRCA	TCGA-A2-A1G0-01A	TMEM130	chr7	98467400	-	KPNA7	chr7	98790724	-
intron-3CDS	ENST00000546258	ENST00000327442		TCGA	RV	BRCA	TCGA-A2-A1G0-01A	TMEM130	chr7	98467400	-	KPNA7	chr7	98790724	-
Frame-shit	ENST00000436636	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000436636	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000436636	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000538048	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000538048	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000538048	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000369326	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000369326	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000369326	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000341852	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000341852	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000341852	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000284483	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000284483	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000284483	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000470834	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000470834	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000470834	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000460047	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000460047	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000460047	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000475336	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000475336	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000475336	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000488470	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000488470	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000488470	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000357327	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000357327	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000357327	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
intron-3CDS	ENST00000464785	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
intron-intron	ENST00000464785	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
intron-intron	ENST00000464785	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000465393	ENST00000367321		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000465393	ENST00000367307		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000465393	ENST00000478643		TCGA	RV	BRCA	TCGA-D8-A1XB-01A	TNIK	chr3	171087409	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000311160	ENST00000388920		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	TNS3	chr7	47384353	-	FOXI2	chr10	129536784	+
Frame-shit	ENST00000355730	ENST00000388920		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	TNS3	chr7	47384353	-	FOXI2	chr10	129536784	+
Frame-shit	ENST00000398879	ENST00000388920		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	TNS3	chr7	47384353	-	FOXI2	chr10	129536784	+
intron-3CDS	ENST00000442536	ENST00000388920		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	TNS3	chr7	47384353	-	FOXI2	chr10	129536784	+
intron-3CDS	ENST00000458317	ENST00000388920		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	TNS3	chr7	47384353	-	FOXI2	chr10	129536784	+
intron-3CDS	ENST00000474346	ENST00000388920		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	TNS3	chr7	47384353	-	FOXI2	chr10	129536784	+
In-frame	ENST00000343526	ENST00000301831		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
5CDS-intron	ENST00000343526	ENST00000420927		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
5CDS-intron	ENST00000343526	ENST00000489118		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
5CDS-intron	ENST00000343526	ENST00000414606		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
In-frame	ENST00000415680	ENST00000301831		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
5CDS-intron	ENST00000415680	ENST00000420927		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
5CDS-intron	ENST00000415680	ENST00000489118		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
5CDS-intron	ENST00000415680	ENST00000414606		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
3UTR-3CDS	ENST00000497516	ENST00000301831		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
3UTR-intron	ENST00000497516	ENST00000420927		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
3UTR-intron	ENST00000497516	ENST00000489118		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
3UTR-intron	ENST00000497516	ENST00000414606		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TRIM24	chr7	138189153	+	ULK4	chr3	41497086	-
intron-3CDS	ENST00000537971	ENST00000428168		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRH1	chr12	11035695	-
5UTR-3CDS	ENST00000011898	ENST00000428168		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRH1	chr12	11035695	-
intron-3CDS	ENST00000407263	ENST00000428168		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRH1	chr12	11035695	-
intron-3CDS	ENST00000492305	ENST00000428168		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRH1	chr12	11035695	-
3UTR-3CDS	ENST00000503191	ENST00000240123		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
3UTR-intron	ENST00000503191	ENST00000523402		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
3UTR-intron	ENST00000503191	ENST00000523740		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
3UTR-intron	ENST00000503191	ENST00000428103		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
In-frame	ENST00000382020	ENST00000240123		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000382020	ENST00000523402		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000382020	ENST00000523740		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000382020	ENST00000428103		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
In-frame	ENST00000506802	ENST00000240123		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000506802	ENST00000523402		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000506802	ENST00000523740		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000506802	ENST00000428103		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
In-frame	ENST00000509380	ENST00000240123		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000509380	ENST00000523402		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000509380	ENST00000523740		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000509380	ENST00000428103		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
In-frame	ENST00000503731	ENST00000240123		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000503731	ENST00000523402		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000503731	ENST00000523740		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
5CDS-intron	ENST00000503731	ENST00000428103		TCGA	RV	BRCA	TCGA-AO-A03T-01A	TUSC3	chr8	15480758	+	SORBS3	chr8	22421500	+
Frame-shit	ENST00000319380	ENST00000508628		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
5CDS-intron	ENST00000319380	ENST00000456466		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
5CDS-intron	ENST00000319380	ENST00000582970		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
5CDS-intron	ENST00000319380	ENST00000319921		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
5CDS-intron	ENST00000319380	ENST00000336301		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
5CDS-intron	ENST00000319380	ENST00000427003		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
intron-3CDS	ENST00000587581	ENST00000508628		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
intron-intron	ENST00000587581	ENST00000456466		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
intron-intron	ENST00000587581	ENST00000582970		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
intron-intron	ENST00000587581	ENST00000319921		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
intron-intron	ENST00000587581	ENST00000336301		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
intron-intron	ENST00000587581	ENST00000427003		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	UBE2O	chr17	74448807	-	RNF213	chr17	78332088	+
Frame-shit	ENST00000262376	ENST00000262370		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000262376	ENST00000415496		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000262376	ENST00000399577		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000262376	ENST00000588994		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000262376	ENST00000586183		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
5CDS-intron	ENST00000262376	ENST00000588015		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000545171	ENST00000262370		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000545171	ENST00000415496		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000545171	ENST00000399577		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000545171	ENST00000588994		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000545171	ENST00000586183		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
5CDS-intron	ENST00000545171	ENST00000588015		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000590769	ENST00000262370		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000590769	ENST00000415496		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000590769	ENST00000399577		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000590769	ENST00000588994		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000590769	ENST00000586183		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
5CDS-intron	ENST00000590769	ENST00000588015		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000396658	ENST00000262370		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000396658	ENST00000415496		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000396658	ENST00000399577		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000396658	ENST00000588994		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
Frame-shit	ENST00000396658	ENST00000586183		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
5CDS-intron	ENST00000396658	ENST00000588015		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
3UTR-3CDS	ENST00000585857	ENST00000262370		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
3UTR-3CDS	ENST00000585857	ENST00000415496		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
3UTR-3CDS	ENST00000585857	ENST00000399577		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
3UTR-3CDS	ENST00000585857	ENST00000588994		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
3UTR-3CDS	ENST00000585857	ENST00000586183		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
3UTR-intron	ENST00000585857	ENST00000588015		TCGA	RV	BRCA	TCGA-AR-A1AQ-01A	UBN1	chr16	4911103	+	MGRN1	chr16	4700366	+
In-frame	ENST00000398571	ENST00000458711		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
In-frame	ENST00000398571	ENST00000424185		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
Frame-shit	ENST00000398571	ENST00000397191		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
5CDS-3UTR	ENST00000398571	ENST00000470164		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
5CDS-3UTR	ENST00000398571	ENST00000309957		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
intron-3CDS	ENST00000472689	ENST00000458711		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
intron-3CDS	ENST00000472689	ENST00000424185		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
intron-3CDS	ENST00000472689	ENST00000397191		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
intron-3UTR	ENST00000472689	ENST00000470164		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
intron-3UTR	ENST00000472689	ENST00000309957		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	USP34	chr2	61468695	-	CARKD	chr13	111286892	+
Frame-shit	ENST00000258399	ENST00000295704		TCGA	RV	BRCA	TCGA-AO-A128-01A	USP37	chr2	219394679	-	RNF25	chr2	219533402	-
In-frame	ENST00000454775	ENST00000295704		TCGA	RV	BRCA	TCGA-AO-A128-01A	USP37	chr2	219394679	-	RNF25	chr2	219533402	-
Frame-shit	ENST00000415516	ENST00000295704		TCGA	RV	BRCA	TCGA-AO-A128-01A	USP37	chr2	219394679	-	RNF25	chr2	219533402	-
Frame-shit	ENST00000418019	ENST00000295704		TCGA	RV	BRCA	TCGA-AO-A128-01A	USP37	chr2	219394679	-	RNF25	chr2	219533402	-
Frame-shit	ENST00000338465	ENST00000295704		TCGA	RV	BRCA	TCGA-AO-A128-01A	USP37	chr2	219394679	-	RNF25	chr2	219533402	-
intron-3CDS	ENST00000475553	ENST00000295704		TCGA	RV	BRCA	TCGA-AO-A128-01A	USP37	chr2	219394679	-	RNF25	chr2	219533402	-
Frame-shit	ENST00000306177	ENST00000223145		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	USP42	chr7	6190137	+	GLCCI1	chr7	8043538	+
5CDS-3UTR	ENST00000306177	ENST00000474269		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	USP42	chr7	6190137	+	GLCCI1	chr7	8043538	+
intron-3CDS	ENST00000394253	ENST00000265350		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000394253	ENST00000467535		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000394253	ENST00000409312		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-intron	ENST00000394253	ENST00000409060		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-3CDS	ENST00000373010	ENST00000265350		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000373010	ENST00000467535		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000373010	ENST00000409312		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-intron	ENST00000373010	ENST00000409060		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
5UTR-3CDS	ENST00000373006	ENST00000265350		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
5UTR-5UTR	ENST00000373006	ENST00000467535		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
5UTR-5UTR	ENST00000373006	ENST00000409312		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
5UTR-intron	ENST00000373006	ENST00000409060		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-3CDS	ENST00000297229	ENST00000265350		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000297229	ENST00000467535		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000297229	ENST00000409312		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-intron	ENST00000297229	ENST00000409060		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-3CDS	ENST00000373009	ENST00000265350		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000373009	ENST00000467535		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-5UTR	ENST00000373009	ENST00000409312		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
intron-intron	ENST00000373009	ENST00000409060		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	USP49	chr6	41859532	-	MED20	chr6	41875025	-
5CDS-5UTR	ENST00000370056	ENST00000314393		TCGA	RV	BRCA	TCGA-E2-A14N-01A	VAV3	chr1	108138834	-	ZHX2	chr8	123875716	+
5CDS-5UTR	ENST00000527011	ENST00000314393		TCGA	RV	BRCA	TCGA-E2-A14N-01A	VAV3	chr1	108138834	-	ZHX2	chr8	123875716	+
5CDS-5UTR	ENST00000544443	ENST00000314393		TCGA	RV	BRCA	TCGA-E2-A14N-01A	VAV3	chr1	108138834	-	ZHX2	chr8	123875716	+
5CDS-5UTR	ENST00000415432	ENST00000314393		TCGA	RV	BRCA	TCGA-E2-A14N-01A	VAV3	chr1	108138834	-	ZHX2	chr8	123875716	+
5UTR-5UTR	ENST00000343258	ENST00000314393		TCGA	RV	BRCA	TCGA-E2-A14N-01A	VAV3	chr1	108138834	-	ZHX2	chr8	123875716	+
intron-5UTR	ENST00000371846	ENST00000314393		TCGA	RV	BRCA	TCGA-E2-A14N-01A	VAV3	chr1	108138834	-	ZHX2	chr8	123875716	+
intron-3CDS	ENST00000535916	ENST00000340647		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000535916	ENST00000330045		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000535916	ENST00000369459		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000535916	ENST00000369462		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-intron	ENST00000535916	ENST00000399042		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000340647		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000330045		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000369459		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000369462		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
5CDS-intron	ENST00000286428	ENST00000399042		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000340647		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000330045		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000369459		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000369462		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-intron	ENST00000459836	ENST00000399042		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
5CDS-intron	ENST00000395996	ENST00000520791		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000523368		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000297565		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000435298		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000522510		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000457907		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000358544	ENST00000520791		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000523368		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000297565		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000435298		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000522510		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000457907		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000357162	ENST00000520791		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000523368		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000297565		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000435298		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000522510		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000457907		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000355155	ENST00000520791		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000523368		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000297565		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000435298		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000522510		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000457907		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000441350	ENST00000520791		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000523368		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000297565		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000435298		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000522510		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000457907		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
intron-intron	ENST00000521932	ENST00000520791		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000523368		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000297565		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000435298		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000522510		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000457907		TCGA	RV	BRCA	TCGA-BH-A203-01A	VPS13B	chr8	100050794	+	OSR2	chr8	99961067	+
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000480033		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000480033		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
In-frame	ENST00000281405	ENST00000338086		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000281405	ENST00000319801		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000281405	ENST00000361078		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000281405	ENST00000536417		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000281405	ENST00000403432		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
5CDS-intron	ENST00000281405	ENST00000420234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000345530	ENST00000338086		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000345530	ENST00000319801		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000345530	ENST00000361078		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000345530	ENST00000536417		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
In-frame	ENST00000345530	ENST00000403432		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
5CDS-intron	ENST00000345530	ENST00000420234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
Frame-shit	ENST00000416055	ENST00000338086		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
Frame-shit	ENST00000416055	ENST00000319801		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
Frame-shit	ENST00000416055	ENST00000361078		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
Frame-shit	ENST00000416055	ENST00000536417		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
Frame-shit	ENST00000416055	ENST00000403432		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
5CDS-intron	ENST00000416055	ENST00000420234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	WDR35	chr2	20130157	-	PUM2	chr2	20483247	-
Frame-shit	ENST00000400794	ENST00000369948		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000400794	ENST00000369949		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000400794	ENST00000369945		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000361054	ENST00000369948		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000361054	ENST00000369949		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000361054	ENST00000369945		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369962	ENST00000369948		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369962	ENST00000369949		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369962	ENST00000369945		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369965	ENST00000369948		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369965	ENST00000369949		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369965	ENST00000369945		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000357672	ENST00000369948		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000357672	ENST00000369949		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000357672	ENST00000369945		TCGA	RV	BRCA	TCGA-D8-A27R-01A	WDR47	chr1	109560140	-	C1orf194	chr1	109649281	-
In-frame	ENST00000377674	ENST00000333172		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ZBTB48	chr1	6648904	+	TAS1R1	chr1	6637010	+
5CDS-intron	ENST00000377674	ENST00000328191		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ZBTB48	chr1	6648904	+	TAS1R1	chr1	6637010	+
5CDS-intron	ENST00000377674	ENST00000351136		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ZBTB48	chr1	6648904	+	TAS1R1	chr1	6637010	+
In-frame	ENST00000341191	ENST00000304076		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000341191	ENST00000602142		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000341191	ENST00000596764		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000341191	ENST00000539284		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000341191	ENST00000599806		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
5UTR-3CDS	ENST00000545749	ENST00000304076		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
5UTR-3CDS	ENST00000545749	ENST00000602142		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
5UTR-3CDS	ENST00000545749	ENST00000596764		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
5UTR-3CDS	ENST00000545749	ENST00000539284		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
5UTR-3CDS	ENST00000545749	ENST00000599806		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000440527	ENST00000304076		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000440527	ENST00000602142		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000440527	ENST00000596764		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000440527	ENST00000539284		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
In-frame	ENST00000440527	ENST00000599806		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ZNF823	chr19	11849632	-	VAV1	chr19	6820713	+
5UTR-5UTR	ENST00000374736	ENST00000238379		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-5UTR	ENST00000374736	ENST00000374180		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-intron	ENST00000374736	ENST00000485934		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
intron-5UTR	ENST00000494467	ENST00000238379		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
intron-5UTR	ENST00000494467	ENST00000374180		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
intron-intron	ENST00000494467	ENST00000485934		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-5UTR	ENST00000423487	ENST00000238379		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-5UTR	ENST00000423487	ENST00000374180		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-intron	ENST00000423487	ENST00000485934		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-5UTR	ENST00000374733	ENST00000238379		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-5UTR	ENST00000374733	ENST00000374180		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
5UTR-intron	ENST00000374733	ENST00000485934		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	ABCA1	chr9	107690216	-	HDHD3	chr9	116137847	-
3UTR-3CDS	ENST00000485925	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
3UTR-3CDS	ENST00000371916	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
Frame-shit	ENST00000371929	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
Frame-shit	ENST00000355699	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
Frame-shit	ENST00000356589	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
intron-3CDS	ENST00000536611	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
intron-3CDS	ENST00000371911	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
intron-3CDS	ENST00000371910	ENST00000373615		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ADAMTS13	chr9	136315086	+	LHX2	chr9	126794699	+
In-frame	ENST00000072869	ENST00000404039		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000072869	ENST00000406326		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000072869	ENST00000377770		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000072869	ENST00000332007		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000072869	ENST00000496611		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000072869	ENST00000427557		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
In-frame	ENST00000476491	ENST00000404039		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000476491	ENST00000406326		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000476491	ENST00000377770		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000476491	ENST00000332007		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000476491	ENST00000496611		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5CDS-intron	ENST00000476491	ENST00000427557		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ADCK2	chr7	140390613	+	DPP6	chr7	154429531	+
5UTR-intron	ENST00000446856	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000446856	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000264758	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000398125	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000513328	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-intron	ENST00000503455	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000355842	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398123	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000398129	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000389838		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000452765		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000442312		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000435136		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000511747		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000503393		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000356331		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
intron-intron	ENST00000538860	ENST00000515183		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2826340	+
5UTR-3CDS	ENST00000357103	ENST00000543086		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
5UTR-3CDS	ENST00000357103	ENST00000546231		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
5UTR-3CDS	ENST00000357103	ENST00000397203		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
5UTR-3CDS	ENST00000357103	ENST00000360905		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
5UTR-3CDS	ENST00000357103	ENST00000589028		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
5UTR-3CDS	ENST00000357103	ENST00000355446		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
5UTR-intron	ENST00000357103	ENST00000536573		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-3CDS	ENST00000544470	ENST00000543086		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-3CDS	ENST00000544470	ENST00000546231		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-3CDS	ENST00000544470	ENST00000397203		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-3CDS	ENST00000544470	ENST00000360905		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-3CDS	ENST00000544470	ENST00000589028		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-3CDS	ENST00000544470	ENST00000355446		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
intron-intron	ENST00000544470	ENST00000536573		TCGA	RV	BRCA	TCGA-A8-A07R-01A	ADIPOR2	chr12	1800357	+	ERC1	chr12	1372200	+
Frame-shit	ENST00000265343	ENST00000265342		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132227856	-	FSTL4	chr5	132561511	-
5CDS-5UTR	ENST00000265343	ENST00000507112		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132227856	-	FSTL4	chr5	132561511	-
intron-3CDS	ENST00000378595	ENST00000265342		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132227856	-	FSTL4	chr5	132561511	-
intron-5UTR	ENST00000378595	ENST00000507112		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132227856	-	FSTL4	chr5	132561511	-
intron-3CDS	ENST00000491831	ENST00000265342		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132227856	-	FSTL4	chr5	132561511	-
intron-5UTR	ENST00000491831	ENST00000507112		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132227856	-	FSTL4	chr5	132561511	-
intron-3CDS	ENST00000530124	ENST00000508784		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000530124	ENST00000513320		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000530124	ENST00000379448		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000530124	ENST00000511534		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000257247	ENST00000508784		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000257247	ENST00000513320		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000257247	ENST00000379448		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000257247	ENST00000511534		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000525875	ENST00000508784		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000525875	ENST00000513320		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000525875	ENST00000379448		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000525875	ENST00000511534		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000378024	ENST00000508784		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000378024	ENST00000513320		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000378024	ENST00000379448		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000378024	ENST00000511534		TCGA	RV	BRCA	TCGA-AC-A23H-01A	AHNAK	chr11	62283375	-	ZNF827	chr4	146859787	-
5UTR-3CDS	ENST00000560302	ENST00000268035		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-3CDS	ENST00000560302	ENST00000558762		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-intron	ENST00000560302	ENST00000560432		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-3CDS	ENST00000394518	ENST00000268035		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-3CDS	ENST00000394518	ENST00000558762		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-intron	ENST00000394518	ENST00000560432		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-3CDS	ENST00000361243	ENST00000268035		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-3CDS	ENST00000361243	ENST00000558762		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
5UTR-intron	ENST00000361243	ENST00000560432		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
intron-3CDS	ENST00000560579	ENST00000268035		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
intron-3CDS	ENST00000560579	ENST00000558762		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
intron-intron	ENST00000560579	ENST00000560432		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
intron-3CDS	ENST00000394510	ENST00000268035		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
intron-3CDS	ENST00000394510	ENST00000558762		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
intron-intron	ENST00000394510	ENST00000560432		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	AKAP13	chr15	85924029	+	IGF1R	chr15	99250791	+
Frame-shit	ENST00000441917	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000441917	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000441917	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000441917	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000441917	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000441917	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
Frame-shit	ENST00000541887	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000541887	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000541887	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000541887	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000541887	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000541887	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
Frame-shit	ENST00000261819	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000261819	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000261819	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000261819	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000261819	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000261819	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
Frame-shit	ENST00000535482	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000535482	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000535482	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000535482	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000535482	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000535482	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5UTR-3CDS	ENST00000544314	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5UTR-intron	ENST00000544314	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5UTR-intron	ENST00000544314	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5UTR-intron	ENST00000544314	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5UTR-intron	ENST00000544314	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5UTR-intron	ENST00000544314	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
Frame-shit	ENST00000344395	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000344395	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000344395	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000344395	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000344395	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
5CDS-intron	ENST00000344395	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
intron-3CDS	ENST00000536366	ENST00000377069		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
intron-intron	ENST00000536366	ENST00000542973		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
intron-intron	ENST00000536366	ENST00000377071		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
intron-intron	ENST00000536366	ENST00000536437		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
intron-intron	ENST00000536366	ENST00000538046		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
intron-intron	ENST00000536366	ENST00000543852		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ANAPC5	chr12	121764899	-	KDM2B	chr12	121958903	-
In-frame	ENST00000360839	ENST00000461783		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000449545		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000367174		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000456144		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000318981		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000360366		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000529824		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000456877		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000528391		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000360839	ENST00000275246		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
In-frame	ENST00000297183	ENST00000461783		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000449545		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000367174		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000456144		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000318981		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000360366		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000529824		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000456877		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000528391		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000297183	ENST00000275246		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
In-frame	ENST00000394723	ENST00000461783		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000449545		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000367174		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000456144		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000318981		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000360366		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000529824		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000456877		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000528391		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394723	ENST00000275246		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
In-frame	ENST00000394722	ENST00000461783		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000449545		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000367174		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000456144		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000318981		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000360366		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000529824		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000456877		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000528391		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000394722	ENST00000275246		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-3CDS	ENST00000462121	ENST00000461783		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000449545		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000367174		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000456144		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000318981		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000360366		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000529824		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000456877		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000528391		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000462121	ENST00000275246		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-3CDS	ENST00000544120	ENST00000461783		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000449545		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000367174		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000456144		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000318981		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000360366		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000529824		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000456877		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000528391		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
intron-intron	ENST00000544120	ENST00000275246		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ANKHD1	chr5	139828890	+	TIAM2	chr6	155565145	+
5CDS-intron	ENST00000343267	ENST00000360325		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	APOD	chr3	195295573	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000343267	ENST00000538261		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	APOD	chr3	195295573	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000343267	ENST00000397317		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	APOD	chr3	195295573	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000343267	ENST00000571881		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	APOD	chr3	195295573	-	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000343267	ENST00000573745		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	APOD	chr3	195295573	-	CLDN7	chr17	7166264	-
In-frame	ENST00000520381	ENST00000297769		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
In-frame	ENST00000520381	ENST00000297770		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
In-frame	ENST00000520381	ENST00000518549		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
In-frame	ENST00000262215	ENST00000297769		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
In-frame	ENST00000262215	ENST00000297770		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
In-frame	ENST00000262215	ENST00000518549		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
intron-3CDS	ENST00000517955	ENST00000297769		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
intron-3CDS	ENST00000517955	ENST00000297770		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
intron-3CDS	ENST00000517955	ENST00000518549		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
intron-3CDS	ENST00000518230	ENST00000297769		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
intron-3CDS	ENST00000518230	ENST00000297770		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
intron-3CDS	ENST00000518230	ENST00000518549		TCGA	RV	BRCA	TCGA-A8-A09N-01A	ARFGEF1	chr8	68150970	-	CPA6	chr8	68397024	-
In-frame	ENST00000289968	ENST00000315183		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
5CDS-intron	ENST00000289968	ENST00000562829		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
5CDS-intron	ENST00000289968	ENST00000395799		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
5CDS-intron	ENST00000289968	ENST00000432286		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
3UTR-3CDS	ENST00000441763	ENST00000315183		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
3UTR-intron	ENST00000441763	ENST00000562829		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
3UTR-intron	ENST00000441763	ENST00000395799		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
3UTR-intron	ENST00000441763	ENST00000432286		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
In-frame	ENST00000303665	ENST00000315183		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
5CDS-intron	ENST00000303665	ENST00000562829		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
5CDS-intron	ENST00000303665	ENST00000395799		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
5CDS-intron	ENST00000303665	ENST00000432286		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
intron-3CDS	ENST00000575975	ENST00000315183		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
intron-intron	ENST00000575975	ENST00000562829		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
intron-intron	ENST00000575975	ENST00000395799		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
intron-intron	ENST00000575975	ENST00000432286		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ARHGAP17	chr16	24953308	-	TNRC6A	chr16	24762047	+
Frame-shit	ENST00000264607	ENST00000391993		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000264607	ENST00000373327		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000264607	ENST00000391994		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
3UTR-3CDS	ENST00000469885	ENST00000391993		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
3UTR-3CDS	ENST00000469885	ENST00000373327		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
3UTR-3CDS	ENST00000469885	ENST00000391994		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000409297	ENST00000391993		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000409297	ENST00000373327		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000409297	ENST00000391994		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239335760	+	TRAF3IP1	chr2	239306100	+
5UTR-5UTR	ENST00000368346	ENST00000368130		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159043309	-
5UTR-5UTR	ENST00000368346	ENST00000411768		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159043309	-
5UTR-5UTR	ENST00000392403	ENST00000368130		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159043309	-
5UTR-5UTR	ENST00000392403	ENST00000411768		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159043309	-
5UTR-5UTR	ENST00000548830	ENST00000368130		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159043309	-
5UTR-5UTR	ENST00000548830	ENST00000411768		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159043309	-
In-frame	ENST00000375687	ENST00000398022		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375687	ENST00000217315		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000542461	ENST00000398022		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000542461	ENST00000217315		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000375689	ENST00000398022		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375689	ENST00000217315		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000306058	ENST00000398022		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000306058	ENST00000217315		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
3UTR-3CDS	ENST00000470145	ENST00000398022		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
3UTR-5UTR	ENST00000470145	ENST00000217315		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000435504	ENST00000264712		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
In-frame	ENST00000435504	ENST00000405914		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5CDS-intron	ENST00000435504	ENST00000496378		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5UTR-3CDS	ENST00000336112	ENST00000264712		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5UTR-3CDS	ENST00000336112	ENST00000405914		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5UTR-intron	ENST00000336112	ENST00000496378		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5UTR-3CDS	ENST00000272341	ENST00000264712		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5UTR-3CDS	ENST00000272341	ENST00000405914		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
5UTR-intron	ENST00000272341	ENST00000496378		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
intron-3CDS	ENST00000404843	ENST00000264712		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
intron-3CDS	ENST00000404843	ENST00000405914		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
intron-intron	ENST00000404843	ENST00000496378		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
intron-3CDS	ENST00000497092	ENST00000264712		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
intron-3CDS	ENST00000497092	ENST00000405914		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
intron-intron	ENST00000497092	ENST00000496378		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	ASXL2	chr2	26101035	-	KIF3C	chr2	26179313	-
In-frame	ENST00000283558	ENST00000261965		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000283558	ENST00000375669		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
5CDS-intron	ENST00000283558	ENST00000462580		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000375630	ENST00000261965		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000375630	ENST00000375669		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
5CDS-intron	ENST00000375630	ENST00000462580		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000487903	ENST00000261965		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000487903	ENST00000375669		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
5CDS-intron	ENST00000487903	ENST00000462580		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000375645	ENST00000261965		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
In-frame	ENST00000375645	ENST00000375669		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
5CDS-intron	ENST00000375645	ENST00000462580		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
intron-3CDS	ENST00000419448	ENST00000261965		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
intron-3CDS	ENST00000419448	ENST00000375669		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
intron-intron	ENST00000419448	ENST00000462580		TCGA	RV	BRCA	TCGA-D8-A143-01A	ATP11A	chr13	113490565	+	TUBGCP3	chr13	113209319	-
Frame-shit	ENST00000350721	ENST00000260803		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ATR	chr3	142297488	-	DBR1	chr3	137892468	-
5CDS-5UTR	ENST00000350721	ENST00000505015		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ATR	chr3	142297488	-	DBR1	chr3	137892468	-
5CDS-5UTR	ENST00000350721	ENST00000463982		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ATR	chr3	142297488	-	DBR1	chr3	137892468	-
Frame-shit	ENST00000383101	ENST00000260803		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ATR	chr3	142297488	-	DBR1	chr3	137892468	-
5CDS-5UTR	ENST00000383101	ENST00000505015		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ATR	chr3	142297488	-	DBR1	chr3	137892468	-
5CDS-5UTR	ENST00000383101	ENST00000463982		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ATR	chr3	142297488	-	DBR1	chr3	137892468	-
5CDS-5UTR	ENST00000262320	ENST00000361339		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000262320	ENST00000426508		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5CDS-intron	ENST00000262320	ENST00000439987		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000354866	ENST00000361339		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000354866	ENST00000426508		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5CDS-intron	ENST00000354866	ENST00000439987		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5UTR-5UTR	ENST00000481769	ENST00000361339		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5UTR-5UTR	ENST00000481769	ENST00000426508		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5UTR-intron	ENST00000481769	ENST00000439987		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	AXIN1	chr16	354304	-	IFT140	chr16	1576797	-
5UTR-5UTR	ENST00000576599	ENST00000380833		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5UTR-5UTR	ENST00000576599	ENST00000380829		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5UTR-intron	ENST00000576599	ENST00000421085		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5CDS-5UTR	ENST00000320865	ENST00000380833		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5CDS-5UTR	ENST00000320865	ENST00000380829		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5CDS-intron	ENST00000320865	ENST00000421085		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5UTR-5UTR	ENST00000571954	ENST00000380833		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5UTR-5UTR	ENST00000571954	ENST00000380829		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
5UTR-intron	ENST00000571954	ENST00000421085		TCGA	RV	BRCA	TCGA-BH-A6R9-01A	B3GNTL1	chr17	81006347	-	CLCN4	chrX	10153062	+
Frame-shit	ENST00000589222	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000589222	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000407086	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000407086	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000390652	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000390652	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000408905	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000408905	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000588462	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000588462	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000585744	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000585744	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000588874	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000588874	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
intron-3CDS	ENST00000585812	ENST00000083182		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
intron-intron	ENST00000585812	ENST00000592995		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	BCAS3	chr17	59067596	+	APPBP2	chr17	58577848	-
In-frame	ENST00000589222	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000589222	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000589222	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000589222	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000407086	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000407086	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000407086	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000407086	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000390652	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000390652	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000390652	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000390652	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000408905	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000408905	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000408905	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000408905	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588462	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588462	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588462	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588462	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000585744	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000585744	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000585744	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000585744	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588874	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588874	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588874	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000588874	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
intron-3CDS	ENST00000585812	ENST00000456543		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
intron-3CDS	ENST00000585812	ENST00000449787		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
intron-3CDS	ENST00000585812	ENST00000423893		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
intron-3CDS	ENST00000585812	ENST00000332800		TCGA	RV	BRCA	TCGA-E2-A14P-01A	BCAS3	chr17	59161925	+	GH2	chr17	61958879	-
In-frame	ENST00000261192	ENST00000381340		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
5CDS-intron	ENST00000261192	ENST00000545902		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
5CDS-intron	ENST00000261192	ENST00000242737		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-3CDS	ENST00000538118	ENST00000381340		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-intron	ENST00000538118	ENST00000545902		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-intron	ENST00000538118	ENST00000242737		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
In-frame	ENST00000342945	ENST00000381340		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
5CDS-intron	ENST00000342945	ENST00000545902		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
5CDS-intron	ENST00000342945	ENST00000242737		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-3CDS	ENST00000539282	ENST00000381340		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-intron	ENST00000539282	ENST00000545902		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-intron	ENST00000539282	ENST00000242737		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
In-frame	ENST00000539780	ENST00000381340		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
5CDS-intron	ENST00000539780	ENST00000545902		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
5CDS-intron	ENST00000539780	ENST00000242737		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-3CDS	ENST00000544418	ENST00000381340		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-intron	ENST00000544418	ENST00000545902		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
intron-intron	ENST00000544418	ENST00000242737		TCGA	RV	BRCA	TCGA-A2-A04U-01A	BCAT1	chr12	25101861	-	ITPR2	chr12	26493261	-
In-frame	ENST00000589718	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000589718	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
In-frame	ENST00000586576	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000586576	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
intron-3CDS	ENST00000484949	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
intron-intron	ENST00000484949	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
In-frame	ENST00000308721	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000308721	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
In-frame	ENST00000396367	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000396367	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
In-frame	ENST00000266434	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000266434	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
In-frame	ENST00000396369	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000396369	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A13D-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	12037379	+
5CDS-3UTR	ENST00000333229	ENST00000416101		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-3UTR	ENST00000333229	ENST00000269081		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000333229	ENST00000432313		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000333229	ENST00000519732		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000333229	ENST00000423818		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-3UTR	ENST00000342449	ENST00000416101		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-3UTR	ENST00000342449	ENST00000269081		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000342449	ENST00000432313		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000342449	ENST00000519732		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000342449	ENST00000423818		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-3UTR	ENST00000380800	ENST00000416101		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-3UTR	ENST00000380800	ENST00000269081		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000380800	ENST00000432313		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000380800	ENST00000519732		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
5CDS-intron	ENST00000380800	ENST00000423818		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-3UTR	ENST00000341322	ENST00000416101		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-3UTR	ENST00000341322	ENST00000269081		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-intron	ENST00000341322	ENST00000432313		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-intron	ENST00000341322	ENST00000519732		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-intron	ENST00000341322	ENST00000423818		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-3UTR	ENST00000470108	ENST00000416101		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-3UTR	ENST00000470108	ENST00000269081		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-intron	ENST00000470108	ENST00000432313		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-intron	ENST00000470108	ENST00000519732		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
intron-intron	ENST00000470108	ENST00000423818		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	BRWD1	chr21	40619627	-	ABCA10	chr17	67184020	-
Frame-shit	ENST00000375445	ENST00000227665		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	BUD13	chr11	116631451	-	APOA5	chr11	116661783	-
Frame-shit	ENST00000375445	ENST00000542499		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	BUD13	chr11	116631451	-	APOA5	chr11	116661783	-
Frame-shit	ENST00000260210	ENST00000227665		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	BUD13	chr11	116631451	-	APOA5	chr11	116661783	-
Frame-shit	ENST00000260210	ENST00000542499		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	BUD13	chr11	116631451	-	APOA5	chr11	116661783	-
Frame-shit	ENST00000294360	ENST00000371108		TCGA	RV	BRCA	TCGA-B6-A409-01A	C1orf123	chr1	53685933	-	ALG6	chr1	63862184	+
Frame-shit	ENST00000294360	ENST00000263440		TCGA	RV	BRCA	TCGA-B6-A409-01A	C1orf123	chr1	53685933	-	ALG6	chr1	63862184	+
5CDS-intron	ENST00000294360	ENST00000494765		TCGA	RV	BRCA	TCGA-B6-A409-01A	C1orf123	chr1	53685933	-	ALG6	chr1	63862184	+
5UTR-3CDS	ENST00000470385	ENST00000371108		TCGA	RV	BRCA	TCGA-B6-A409-01A	C1orf123	chr1	53685933	-	ALG6	chr1	63862184	+
5UTR-3CDS	ENST00000470385	ENST00000263440		TCGA	RV	BRCA	TCGA-B6-A409-01A	C1orf123	chr1	53685933	-	ALG6	chr1	63862184	+
5UTR-intron	ENST00000470385	ENST00000494765		TCGA	RV	BRCA	TCGA-B6-A409-01A	C1orf123	chr1	53685933	-	ALG6	chr1	63862184	+
5CDS-5UTR	ENST00000383699	ENST00000476844		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000383699	ENST00000492590		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000383699	ENST00000466788		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000383699	ENST00000468189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000383699	ENST00000341848		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000407528	ENST00000476844		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000407528	ENST00000492590		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000407528	ENST00000466788		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000407528	ENST00000468189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000407528	ENST00000341848		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000405615	ENST00000476844		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000405615	ENST00000492590		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000405615	ENST00000466788		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000405615	ENST00000468189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000405615	ENST00000341848		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
intron-5UTR	ENST00000485126	ENST00000476844		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
intron-5UTR	ENST00000485126	ENST00000492590		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
intron-intron	ENST00000485126	ENST00000466788		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
intron-5UTR	ENST00000485126	ENST00000468189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
intron-intron	ENST00000485126	ENST00000341848		TCGA	RV	BRCA	TCGA-C8-A26V-01A	CADM2	chr3	85851346	+	FHIT	chr3	60522712	-
In-frame	ENST00000383710	ENST00000476844		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000383710	ENST00000492590		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000383710	ENST00000466788		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000383710	ENST00000468189		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000383710	ENST00000341848		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000357948	ENST00000476844		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000357948	ENST00000492590		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000357948	ENST00000466788		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000357948	ENST00000468189		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000357948	ENST00000341848		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000283269	ENST00000476844		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000283269	ENST00000492590		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000283269	ENST00000466788		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000283269	ENST00000468189		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000283269	ENST00000341848		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000490353	ENST00000476844		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
In-frame	ENST00000490353	ENST00000492590		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000490353	ENST00000466788		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000490353	ENST00000468189		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000490353	ENST00000341848		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000462768	ENST00000476844		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000462768	ENST00000492590		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000462768	ENST00000466788		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000462768	ENST00000468189		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000462768	ENST00000341848		TCGA	RV	BRCA	TCGA-E9-A22E-01A	CADPS	chr3	62860264	-	FHIT	chr3	59908140	-
Frame-shit	ENST00000303635	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000303635	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000303635	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000303635	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
Frame-shit	ENST00000439411	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000439411	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000439411	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000439411	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
3UTR-3CDS	ENST00000476163	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
3UTR-3UTR	ENST00000476163	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
3UTR-3UTR	ENST00000476163	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
3UTR-3UTR	ENST00000476163	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
Frame-shit	ENST00000557126	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000557126	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000557126	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000557126	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
Frame-shit	ENST00000473578	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000473578	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000473578	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000473578	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
Frame-shit	ENST00000467404	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000467404	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000467404	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
5CDS-3UTR	ENST00000467404	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
intron-3CDS	ENST00000476864	ENST00000054650		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
intron-3UTR	ENST00000476864	ENST00000484676		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
intron-3UTR	ENST00000476864	ENST00000307896		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
intron-3UTR	ENST00000476864	ENST00000377627		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	CAMTA1	chr1	6845635	+	THAP3	chr1	6688559	+
In-frame	ENST00000421587	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000421587	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000421587	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000318588	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000318588	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000318588	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000361962	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000361962	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000361962	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378163	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378163	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000378163	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378158	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378158	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000378158	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378166	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378166	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000378166	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000442742	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000442742	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000442742	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000472704	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000472704	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000472704	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378154	ENST00000378695		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000378154	ENST00000312442		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
5CDS-intron	ENST00000378154	ENST00000548623		TCGA	RV	BRCA	TCGA-E2-A14T-01A	CASK	chrX	41782183	-	GLIPR1L1	chr12	75737473	+
Frame-shit	ENST00000256343	ENST00000267620		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	CATSPERB	chr14	92174485	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000256343	ENST00000342058		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	CATSPERB	chr14	92174485	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000256343	ENST00000556154		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	CATSPERB	chr14	92174485	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000256343	ENST00000556961		TCGA	RV	BRCA	TCGA-EW-A1P1-01A	CATSPERB	chr14	92174485	-	FBLN5	chr14	92361416	-
In-frame	ENST00000397558	ENST00000535228		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
In-frame	ENST00000397558	ENST00000328957		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
5CDS-5UTR	ENST00000397558	ENST00000397325		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
5CDS-5UTR	ENST00000397558	ENST00000541995		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
5CDS-intron	ENST00000397558	ENST00000535208		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-3CDS	ENST00000446727	ENST00000535228		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-3CDS	ENST00000446727	ENST00000328957		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-5UTR	ENST00000446727	ENST00000397325		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-5UTR	ENST00000446727	ENST00000541995		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-intron	ENST00000446727	ENST00000535208		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-3CDS	ENST00000257583	ENST00000535228		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-3CDS	ENST00000257583	ENST00000328957		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-5UTR	ENST00000257583	ENST00000397325		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-5UTR	ENST00000257583	ENST00000541995		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-intron	ENST00000257583	ENST00000535208		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-3CDS	ENST00000546857	ENST00000535228		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-3CDS	ENST00000546857	ENST00000328957		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-5UTR	ENST00000546857	ENST00000397325		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-5UTR	ENST00000546857	ENST00000541995		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
intron-intron	ENST00000546857	ENST00000535208		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	CCDC64	chr12	120436540	+	GALNT9	chr12	132688235	-
In-frame	ENST00000379153	ENST00000421865		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	CD83	chr6	14118296	+	LAMA2	chr6	129663488	+
5CDS-intron	ENST00000379153	ENST00000498257		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	CD83	chr6	14118296	+	LAMA2	chr6	129663488	+
5UTR-5UTR	ENST00000335793	ENST00000302584		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	CDC42EP4	chr17	71308032	-	NEUROD2	chr17	37762857	-
5UTR-5UTR	ENST00000439510	ENST00000302584		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	CDC42EP4	chr17	71308032	-	NEUROD2	chr17	37762857	-
5UTR-5UTR	ENST00000581014	ENST00000302584		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	CDC42EP4	chr17	71308032	-	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000582303	ENST00000302584		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	CDC42EP4	chr17	71308032	-	NEUROD2	chr17	37762857	-
Frame-shit	ENST00000271332	ENST00000369939		TCGA	RV	BRCA	TCGA-A7-A13D-01A	CELSR2	chr1	109816292	+	KIAA1324	chr1	109704516	+
Frame-shit	ENST00000271332	ENST00000529753		TCGA	RV	BRCA	TCGA-A7-A13D-01A	CELSR2	chr1	109816292	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000271332	ENST00000369938		TCGA	RV	BRCA	TCGA-A7-A13D-01A	CELSR2	chr1	109816292	+	KIAA1324	chr1	109704516	+
3UTR-3CDS	ENST00000498157	ENST00000369939		TCGA	RV	BRCA	TCGA-A7-A13D-01A	CELSR2	chr1	109816292	+	KIAA1324	chr1	109704516	+
3UTR-3CDS	ENST00000498157	ENST00000529753		TCGA	RV	BRCA	TCGA-A7-A13D-01A	CELSR2	chr1	109816292	+	KIAA1324	chr1	109704516	+
3UTR-intron	ENST00000498157	ENST00000369938		TCGA	RV	BRCA	TCGA-A7-A13D-01A	CELSR2	chr1	109816292	+	KIAA1324	chr1	109704516	+
5UTR-3CDS	ENST00000366955	ENST00000343846		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000366955	ENST00000366878		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000366955	ENST00000484758		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000366955	ENST00000494793		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000366955	ENST00000478605		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000366955	ENST00000454695		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000366955	ENST00000344029		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
5UTR-intron	ENST00000366955	ENST00000366877		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000467765	ENST00000343846		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000467765	ENST00000366878		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000467765	ENST00000484758		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000467765	ENST00000494793		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000467765	ENST00000478605		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000467765	ENST00000454695		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000467765	ENST00000344029		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
intron-intron	ENST00000467765	ENST00000366877		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	SUSD4	chr1	223442017	-
In-frame	ENST00000265689	ENST00000340360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000265689	ENST00000321448		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000265689	ENST00000527087		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000265689	ENST00000533598		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-3CDS	ENST00000533728	ENST00000340360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-5UTR	ENST00000533728	ENST00000321448		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-5UTR	ENST00000533728	ENST00000527087		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-5UTR	ENST00000533728	ENST00000533598		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
In-frame	ENST00000356135	ENST00000340360		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000356135	ENST00000321448		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000356135	ENST00000527087		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000356135	ENST00000533598		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
Frame-shit	ENST00000274458	ENST00000453654		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000274458	ENST00000288490		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000274458	ENST00000424189		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000274458	ENST00000446122		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
5CDS-5UTR	ENST00000274458	ENST00000494390		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000515539	ENST00000453654		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000515539	ENST00000288490		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000515539	ENST00000424189		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
Frame-shit	ENST00000515539	ENST00000446122		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
5CDS-5UTR	ENST00000515539	ENST00000494390		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
intron-3CDS	ENST00000503424	ENST00000453654		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
intron-3CDS	ENST00000503424	ENST00000288490		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
intron-3CDS	ENST00000503424	ENST00000424189		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
intron-3CDS	ENST00000503424	ENST00000446122		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
intron-5UTR	ENST00000503424	ENST00000494390		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	COMMD10	chr5	115469875	+	DGKI	chr7	137076082	-
5CDS-intron	ENST00000231948	ENST00000357716		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000231948	ENST00000486284		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000231948	ENST00000389336		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000231948	ENST00000402647		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000231948	ENST00000403881		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000231948	ENST00000458641		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000432408	ENST00000357716		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000432408	ENST00000486284		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000432408	ENST00000389336		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000432408	ENST00000402647		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000432408	ENST00000403881		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
5CDS-intron	ENST00000432408	ENST00000458641		TCGA	RV	BRCA	TCGA-BH-A0HP-01A	CRBN	chr3	3209318	-	GRM7	chr3	6870318	+
In-frame	ENST00000330387	ENST00000449833		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000330387	ENST00000409161		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000330387	ENST00000423696		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000330387	ENST00000338508		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000330387	ENST00000409530		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000330387	ENST00000449116		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000330387	ENST00000357171		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000330387	ENST00000468619		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000449833		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000409161		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000423696		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000338508		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000409530		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000449116		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000456390	ENST00000357171		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000456390	ENST00000468619		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000449833		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000409161		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000423696		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000338508		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000409530		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000449116		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
In-frame	ENST00000452463	ENST00000357171		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000452463	ENST00000468619		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000449833		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000409161		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000423696		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000338508		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000409530		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000449116		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000458726	ENST00000357171		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
intron-intron	ENST00000458726	ENST00000468619		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000449833		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000409161		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000423696		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000338508		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000409530		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000449116		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000468127	ENST00000357171		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-intron	ENST00000468127	ENST00000468619		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	CREB3L2	chr7	137686350	-	SHANK2	chr11	70349036	-
5UTR-5UTR	ENST00000262982	ENST00000519476		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000262982	ENST00000297720		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000262982	ENST00000524874		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000262982	ENST00000379957		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000262982	ENST00000523983		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-intron	ENST00000262982	ENST00000527710		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-intron	ENST00000262982	ENST00000528827		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000542325	ENST00000519476		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000542325	ENST00000297720		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000542325	ENST00000524874		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000542325	ENST00000379957		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000542325	ENST00000523983		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-intron	ENST00000542325	ENST00000527710		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5UTR-intron	ENST00000542325	ENST00000528827		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000396192	ENST00000519476		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000396192	ENST00000297720		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000396192	ENST00000524874		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000396192	ENST00000379957		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000396192	ENST00000523983		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-intron	ENST00000396192	ENST00000527710		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-intron	ENST00000396192	ENST00000528827		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000469700	ENST00000519476		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000469700	ENST00000297720		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000469700	ENST00000524874		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000469700	ENST00000379957		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000469700	ENST00000523983		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-intron	ENST00000469700	ENST00000527710		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
intron-intron	ENST00000469700	ENST00000528827		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	CSE1L	chr20	47662960	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000373381	ENST00000476521		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
5CDS-intron	ENST00000373381	ENST00000370751		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
5CDS-intron	ENST00000373381	ENST00000342282		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373380	ENST00000476521		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373380	ENST00000370751		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373380	ENST00000342282		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373377	ENST00000476521		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373377	ENST00000370751		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373377	ENST00000342282		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373388	ENST00000476521		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373388	ENST00000370751		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000373388	ENST00000342282		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000489419	ENST00000476521		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000489419	ENST00000370751		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000489419	ENST00000342282		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000338325	ENST00000476521		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000338325	ENST00000370751		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
intron-intron	ENST00000338325	ENST00000342282		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	CSMD2	chr1	34052104	-	IFI44L	chr1	79102717	+
5CDS-5UTR	ENST00000443503	ENST00000432054		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000443503	ENST00000393238		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000443503	ENST00000426664		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000443503	ENST00000329333		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000443503	ENST00000515024		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000273179	ENST00000432054		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000273179	ENST00000393238		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000273179	ENST00000426664		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000273179	ENST00000329333		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000273179	ENST00000515024		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
3UTR-5UTR	ENST00000310189	ENST00000432054		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
3UTR-5UTR	ENST00000310189	ENST00000393238		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
3UTR-5UTR	ENST00000310189	ENST00000426664		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
3UTR-5UTR	ENST00000310189	ENST00000329333		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
3UTR-intron	ENST00000310189	ENST00000515024		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTDSPL	chr3	38012990	+	TMCC1	chr3	129390107	-
Frame-shit	ENST00000293778	ENST00000338694		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CXCL16	chr17	4641703	-	TEKT1	chr17	6722677	-
5CDS-intron	ENST00000293778	ENST00000535086		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CXCL16	chr17	4641703	-	TEKT1	chr17	6722677	-
intron-3CDS	ENST00000576153	ENST00000338694		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CXCL16	chr17	4641703	-	TEKT1	chr17	6722677	-
intron-intron	ENST00000576153	ENST00000535086		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CXCL16	chr17	4641703	-	TEKT1	chr17	6722677	-
In-frame	ENST00000574412	ENST00000338694		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CXCL16	chr17	4641703	-	TEKT1	chr17	6722677	-
5CDS-intron	ENST00000574412	ENST00000535086		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CXCL16	chr17	4641703	-	TEKT1	chr17	6722677	-
5CDS-5UTR	ENST00000259371	ENST00000526767		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
5CDS-5UTR	ENST00000259371	ENST00000530128		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
5CDS-5UTR	ENST00000259371	ENST00000381057		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
5CDS-5UTR	ENST00000408936	ENST00000526767		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
5CDS-5UTR	ENST00000408936	ENST00000530128		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
5CDS-5UTR	ENST00000408936	ENST00000381057		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
intron-5UTR	ENST00000309989	ENST00000526767		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
intron-5UTR	ENST00000309989	ENST00000530128		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
intron-5UTR	ENST00000309989	ENST00000381057		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
intron-5UTR	ENST00000487716	ENST00000526767		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
intron-5UTR	ENST00000487716	ENST00000530128		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
intron-5UTR	ENST00000487716	ENST00000381057		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70896445	+
Frame-shit	ENST00000397239	ENST00000368559		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	DEK	chr6	18249882	-	NUP210L	chr1	154000073	-
Frame-shit	ENST00000397239	ENST00000368553		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	DEK	chr6	18249882	-	NUP210L	chr1	154000073	-
Frame-shit	ENST00000397239	ENST00000271854		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	DEK	chr6	18249882	-	NUP210L	chr1	154000073	-
Frame-shit	ENST00000244776	ENST00000368559		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	DEK	chr6	18249882	-	NUP210L	chr1	154000073	-
Frame-shit	ENST00000244776	ENST00000368553		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	DEK	chr6	18249882	-	NUP210L	chr1	154000073	-
Frame-shit	ENST00000244776	ENST00000271854		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	DEK	chr6	18249882	-	NUP210L	chr1	154000073	-
5CDS-5UTR	ENST00000535622	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000535622	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400246	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400246	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000266091	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000266091	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382105	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382105	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400249	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400249	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382112	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382112	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382111	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382111	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400248	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400248	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
3UTR-5UTR	ENST00000494060	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
3UTR-5UTR	ENST00000494060	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000536766	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000536766	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000400242	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000400242	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000539165	ENST00000262150		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000539165	ENST00000540086		TCGA	RV	BRCA	TCGA-E2-A1IO-01A	DEPDC5	chr22	32270391	+	CDH19	chr18	64239553	-
intron-3CDS	ENST00000373913	ENST00000346141		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373913	ENST00000325752		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373913	ENST00000340993		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373913	ENST00000394239		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373913	ENST00000592426		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373913	ENST00000376094		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373913	ENST00000539018		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373913	ENST00000591611		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000401952	ENST00000346141		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000401952	ENST00000325752		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000401952	ENST00000340993		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000401952	ENST00000394239		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000401952	ENST00000592426		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000401952	ENST00000376094		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000401952	ENST00000539018		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000401952	ENST00000591611		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373907	ENST00000346141		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373907	ENST00000325752		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373907	ENST00000340993		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373907	ENST00000394239		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373907	ENST00000592426		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373907	ENST00000376094		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373907	ENST00000539018		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373907	ENST00000591611		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000339266	ENST00000346141		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000339266	ENST00000325752		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000339266	ENST00000340993		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000339266	ENST00000394239		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000339266	ENST00000592426		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000339266	ENST00000376094		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000339266	ENST00000539018		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000339266	ENST00000591611		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000475894	ENST00000346141		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000475894	ENST00000325752		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000475894	ENST00000340993		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000475894	ENST00000394239		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000475894	ENST00000592426		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000475894	ENST00000376094		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000475894	ENST00000539018		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000475894	ENST00000591611		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
In-frame	ENST00000340491	ENST00000346141		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
In-frame	ENST00000340491	ENST00000325752		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
In-frame	ENST00000340491	ENST00000340993		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
5CDS-intron	ENST00000340491	ENST00000394239		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
5CDS-intron	ENST00000340491	ENST00000592426		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
5CDS-intron	ENST00000340491	ENST00000376094		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
5CDS-intron	ENST00000340491	ENST00000539018		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
5CDS-intron	ENST00000340491	ENST00000591611		TCGA	RV	BRCA	TCGA-AC-A62V-01A	DLGAP4	chr20	35091002	+	TUBD1	chr17	57941208	-
In-frame	ENST00000341772	ENST00000283943		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
In-frame	ENST00000341772	ENST00000389045		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
In-frame	ENST00000341772	ENST00000389044		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
5CDS-intron	ENST00000341772	ENST00000543084		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
5CDS-intron	ENST00000341772	ENST00000409677		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
intron-3CDS	ENST00000482831	ENST00000283943		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
intron-3CDS	ENST00000482831	ENST00000389045		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
intron-3CDS	ENST00000482831	ENST00000389044		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
intron-intron	ENST00000482831	ENST00000543084		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
intron-intron	ENST00000482831	ENST00000409677		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DNER	chr2	230411663	-	TRIP12	chr2	230650571	-
Frame-shit	ENST00000251157	ENST00000608999		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
Frame-shit	ENST00000251157	ENST00000336894		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-intron	ENST00000251157	ENST00000480184		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-intron	ENST00000251157	ENST00000356764		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-3UTR	ENST00000251157	ENST00000290419		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-5UTR	ENST00000251157	ENST00000391959		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-5UTR	ENST00000251157	ENST00000367270		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
Frame-shit	ENST00000340370	ENST00000608999		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
Frame-shit	ENST00000340370	ENST00000336894		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-intron	ENST00000340370	ENST00000480184		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-intron	ENST00000340370	ENST00000356764		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-3UTR	ENST00000340370	ENST00000290419		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-5UTR	ENST00000340370	ENST00000391959		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
5CDS-5UTR	ENST00000340370	ENST00000367270		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000489185	ENST00000608999		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000489185	ENST00000336894		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000489185	ENST00000480184		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000489185	ENST00000356764		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-3UTR	ENST00000489185	ENST00000290419		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000489185	ENST00000391959		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000489185	ENST00000367270		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000404627	ENST00000608999		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000404627	ENST00000336894		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000404627	ENST00000480184		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000404627	ENST00000356764		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-3UTR	ENST00000404627	ENST00000290419		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000404627	ENST00000391959		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000404627	ENST00000367270		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	PPP1R12B	chr1	202457661	+
Frame-shit	ENST00000399151	ENST00000380637		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
Frame-shit	ENST00000399151	ENST00000380634		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
Frame-shit	ENST00000399151	ENST00000458295		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
Frame-shit	ENST00000399151	ENST00000380631		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
Frame-shit	ENST00000399151	ENST00000333634		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
intron-3CDS	ENST00000492760	ENST00000380637		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
intron-3CDS	ENST00000492760	ENST00000380634		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
intron-3CDS	ENST00000492760	ENST00000458295		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
intron-3CDS	ENST00000492760	ENST00000380631		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
intron-3CDS	ENST00000492760	ENST00000333634		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	DOPEY2	chr21	37612253	+	SH3BGR	chr21	40847061	+
In-frame	ENST00000324472	ENST00000315567		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	DPY19L2	chr12	64061837	-	MRPL1	chr4	78870951	+
5CDS-intron	ENST00000324472	ENST00000506674		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	DPY19L2	chr12	64061837	-	MRPL1	chr4	78870951	+
intron-3CDS	ENST00000413230	ENST00000315567		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	DPY19L2	chr12	64061837	-	MRPL1	chr4	78870951	+
intron-intron	ENST00000413230	ENST00000506674		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	DPY19L2	chr12	64061837	-	MRPL1	chr4	78870951	+
intron-3CDS	ENST00000442713	ENST00000285039		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-3CDS	ENST00000442713	ENST00000324581		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-5UTR	ENST00000442713	ENST00000592688		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-intron	ENST00000442713	ENST00000587895		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
In-frame	ENST00000269445	ENST00000285039		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
In-frame	ENST00000269445	ENST00000324581		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
5CDS-5UTR	ENST00000269445	ENST00000592688		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
5CDS-intron	ENST00000269445	ENST00000587895		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-3CDS	ENST00000584977	ENST00000285039		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-3CDS	ENST00000584977	ENST00000324581		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-5UTR	ENST00000584977	ENST00000592688		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
intron-intron	ENST00000584977	ENST00000587895		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
5UTR-3CDS	ENST00000578396	ENST00000285039		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
5UTR-3CDS	ENST00000578396	ENST00000324581		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
5UTR-5UTR	ENST00000578396	ENST00000592688		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
5UTR-intron	ENST00000578396	ENST00000587895		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	DYM	chr18	46904937	-	MYO5B	chr18	47376030	-
Frame-shit	ENST00000372979	ENST00000395795		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000372979	ENST00000374429		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000372979	ENST00000395793		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000372979	ENST00000374426		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000372979	ENST00000343575		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000372979	ENST00000395794		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000372979	ENST00000496375		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
Frame-shit	ENST00000454759	ENST00000395795		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000454759	ENST00000374429		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000454759	ENST00000395793		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000454759	ENST00000374426		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000454759	ENST00000343575		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000454759	ENST00000395794		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000454759	ENST00000496375		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
Frame-shit	ENST00000430082	ENST00000395795		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000430082	ENST00000374429		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000430082	ENST00000395793		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000430082	ENST00000374426		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000430082	ENST00000343575		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000430082	ENST00000395794		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000430082	ENST00000496375		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-3CDS	ENST00000610256	ENST00000395795		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-intron	ENST00000610256	ENST00000374429		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-intron	ENST00000610256	ENST00000395793		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-intron	ENST00000610256	ENST00000374426		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-intron	ENST00000610256	ENST00000343575		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-intron	ENST00000610256	ENST00000395794		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
5UTR-intron	ENST00000610256	ENST00000496375		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	ECD	chr10	74923491	-	CXCL12	chr10	44793345	-
In-frame	ENST00000322349	ENST00000261226		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	EEA1	chr12	93285405	-	TMCC3	chr12	94976314	-
5CDS-5UTR	ENST00000322349	ENST00000551457		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	EEA1	chr12	93285405	-	TMCC3	chr12	94976314	-
5CDS-intron	ENST00000322349	ENST00000552239		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	EEA1	chr12	93285405	-	TMCC3	chr12	94976314	-
5UTR-3CDS	ENST00000547833	ENST00000261226		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	EEA1	chr12	93285405	-	TMCC3	chr12	94976314	-
5UTR-5UTR	ENST00000547833	ENST00000551457		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	EEA1	chr12	93285405	-	TMCC3	chr12	94976314	-
5UTR-intron	ENST00000547833	ENST00000552239		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	EEA1	chr12	93285405	-	TMCC3	chr12	94976314	-
intron-5UTR	ENST00000429723	ENST00000503581		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000429723	ENST00000370621		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-intron	ENST00000429723	ENST00000370616		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000429723	ENST00000393380		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000429723	ENST00000342421		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000429723	ENST00000370618		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-intron	ENST00000429723	ENST00000486069		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000379715	ENST00000503581		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000379715	ENST00000370621		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-intron	ENST00000379715	ENST00000370616		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000379715	ENST00000393380		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000379715	ENST00000342421		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000379715	ENST00000370618		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-intron	ENST00000379715	ENST00000486069		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000507463	ENST00000503581		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000507463	ENST00000370621		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-intron	ENST00000507463	ENST00000370616		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000507463	ENST00000393380		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000507463	ENST00000342421		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000507463	ENST00000370618		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
intron-intron	ENST00000507463	ENST00000486069		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	EEF1E1	chr6	8095611	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000263026	ENST00000389397		TCGA	RV	BRCA	TCGA-OL-A66P-01A	EEF2K	chr16	22256051	+	VWA3A	chr16	22149681	+
5CDS-5UTR	ENST00000263026	ENST00000389398		TCGA	RV	BRCA	TCGA-OL-A66P-01A	EEF2K	chr16	22256051	+	VWA3A	chr16	22149681	+
5CDS-intron	ENST00000263026	ENST00000563755		TCGA	RV	BRCA	TCGA-OL-A66P-01A	EEF2K	chr16	22256051	+	VWA3A	chr16	22149681	+
intron-5UTR	ENST00000561791	ENST00000389397		TCGA	RV	BRCA	TCGA-OL-A66P-01A	EEF2K	chr16	22256051	+	VWA3A	chr16	22149681	+
intron-5UTR	ENST00000561791	ENST00000389398		TCGA	RV	BRCA	TCGA-OL-A66P-01A	EEF2K	chr16	22256051	+	VWA3A	chr16	22149681	+
intron-intron	ENST00000561791	ENST00000563755		TCGA	RV	BRCA	TCGA-OL-A66P-01A	EEF2K	chr16	22256051	+	VWA3A	chr16	22149681	+
Frame-shit	ENST00000368409	ENST00000368433		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000368409	ENST00000315144		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000368409	ENST00000368432		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
In-frame	ENST00000368409	ENST00000368431		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000368409	ENST00000292180		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-3UTR	ENST00000368409	ENST00000487371		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-3UTR	ENST00000368409	ENST00000405236		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-5UTR	ENST00000368409	ENST00000295530		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-intron	ENST00000368409	ENST00000368428		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000359751	ENST00000368433		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000359751	ENST00000315144		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000359751	ENST00000368432		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
In-frame	ENST00000359751	ENST00000368431		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000359751	ENST00000292180		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-3UTR	ENST00000359751	ENST00000487371		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-3UTR	ENST00000359751	ENST00000405236		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-5UTR	ENST00000359751	ENST00000295530		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-intron	ENST00000359751	ENST00000368428		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000427683	ENST00000368433		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000427683	ENST00000315144		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000427683	ENST00000368432		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
In-frame	ENST00000427683	ENST00000368431		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
Frame-shit	ENST00000427683	ENST00000292180		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-3UTR	ENST00000427683	ENST00000487371		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-3UTR	ENST00000427683	ENST00000405236		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-5UTR	ENST00000427683	ENST00000295530		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
5CDS-intron	ENST00000427683	ENST00000368428		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154960581	+
intron-3CDS	ENST00000264211	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000264211	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000264211	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000264211	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000264211	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-3CDS	ENST00000400422	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-3CDS	ENST00000400422	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-3CDS	ENST00000400422	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-intron	ENST00000400422	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-intron	ENST00000400422	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-3CDS	ENST00000602326	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-3CDS	ENST00000602326	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-3CDS	ENST00000602326	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-intron	ENST00000602326	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
5UTR-intron	ENST00000602326	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374935	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374935	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374935	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374935	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374935	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374937	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374937	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374937	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374937	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374937	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000536266	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000536266	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000536266	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000536266	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000536266	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374933	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374933	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374933	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374933	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374933	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000544689	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000544689	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000544689	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000544689	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000544689	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000356916	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000356916	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000356916	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000356916	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000356916	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374927	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374927	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000374927	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374927	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000374927	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000537738	ENST00000264977		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000537738	ENST00000490467		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-3CDS	ENST00000537738	ENST00000334546		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000537738	ENST00000492624		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
intron-intron	ENST00000537738	ENST00000469270		TCGA	RV	BRCA	TCGA-E2-A158-01A	EIF4G3	chr1	21503215	-	PPP2R3A	chr3	135806725	+
Frame-shit	ENST00000445912	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000445912	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000445912	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000252034	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000252034	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000252034	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000358929	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000358929	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000358929	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000320492	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000320492	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000320492	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000414324	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000414324	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000414324	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380562	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380562	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000380562	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380575	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380575	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000380575	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380584	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380584	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000380584	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000458204	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000458204	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000458204	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000357036	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000357036	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000357036	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000429192	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000429192	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000429192	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380553	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380553	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000380553	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380576	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000380576	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000380576	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000320399	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
Frame-shit	ENST00000320399	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
5CDS-intron	ENST00000320399	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
intron-3CDS	ENST00000466878	ENST00000262432		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
intron-3CDS	ENST00000466878	ENST00000480046		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
intron-intron	ENST00000466878	ENST00000473488		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2B	chr7	128133858	+
intron-3UTR	ENST00000327921	ENST00000557165		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
intron-5UTR	ENST00000327921	ENST00000389879		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
intron-5UTR	ENST00000327921	ENST00000555049		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-3UTR	ENST00000262233	ENST00000557165		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-5UTR	ENST00000262233	ENST00000389879		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-5UTR	ENST00000262233	ENST00000555049		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-3UTR	ENST00000334192	ENST00000557165		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-5UTR	ENST00000334192	ENST00000389879		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-5UTR	ENST00000334192	ENST00000555049		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
intron-3UTR	ENST00000556758	ENST00000557165		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
intron-5UTR	ENST00000556758	ENST00000389879		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
intron-5UTR	ENST00000556758	ENST00000555049		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	EML1	chr14	100259880	+	CCNK	chr14	99958963	+
5CDS-5UTR	ENST00000455140	ENST00000263377		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000455140	ENST00000371835		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000455140	ENST00000360016		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-intron	ENST00000455140	ENST00000602230		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000248070	ENST00000263377		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000248070	ENST00000371835		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000248070	ENST00000360016		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-intron	ENST00000248070	ENST00000602230		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000535753	ENST00000263377		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000535753	ENST00000371835		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000535753	ENST00000360016		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-intron	ENST00000535753	ENST00000602230		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000594975	ENST00000263377		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000594975	ENST00000371835		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000594975	ENST00000360016		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-intron	ENST00000594975	ENST00000602230		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000602009	ENST00000263377		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000602009	ENST00000371835		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000602009	ENST00000360016		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-intron	ENST00000602009	ENST00000602230		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000597937	ENST00000263377		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000597937	ENST00000371835		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000597937	ENST00000360016		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
5CDS-intron	ENST00000597937	ENST00000602230		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	EPS15L1	chr19	16545176	-	BRD4	chr19	15383944	-
intron-3CDS	ENST00000522706	ENST00000325083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
intron-3CDS	ENST00000522706	ENST00000519253		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
intron-3CDS	ENST00000522706	ENST00000524226		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
intron-intron	ENST00000522706	ENST00000518537		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
intron-intron	ENST00000522706	ENST00000518936		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
intron-intron	ENST00000522706	ENST00000327578		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
Frame-shit	ENST00000262109	ENST00000325083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
Frame-shit	ENST00000262109	ENST00000519253		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
Frame-shit	ENST00000262109	ENST00000524226		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5CDS-intron	ENST00000262109	ENST00000518537		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5CDS-intron	ENST00000262109	ENST00000518936		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5CDS-intron	ENST00000262109	ENST00000327578		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5UTR-3CDS	ENST00000518277	ENST00000325083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5UTR-3CDS	ENST00000518277	ENST00000519253		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5UTR-3CDS	ENST00000518277	ENST00000524226		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5UTR-intron	ENST00000518277	ENST00000518537		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5UTR-intron	ENST00000518277	ENST00000518936		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
5UTR-intron	ENST00000518277	ENST00000327578		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ERICH1	chr8	665861	-	PCM1	chr8	17882870	+
In-frame	ENST00000319349	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
In-frame	ENST00000393664	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
Frame-shit	ENST00000538265	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
Frame-shit	ENST00000545954	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
In-frame	ENST00000545089	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
In-frame	ENST00000591713	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
intron-3CDS	ENST00000586826	ENST00000293275		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ETV4	chr17	41610042	-	CCL16	chr17	34305299	-
3UTR-3CDS	ENST00000508198	ENST00000393743		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	FAM160A1	chr4	152403800	+	DDX60	chr4	169146827	-
3UTR-intron	ENST00000508198	ENST00000505393		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	FAM160A1	chr4	152403800	+	DDX60	chr4	169146827	-
5UTR-3CDS	ENST00000435205	ENST00000393743		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	FAM160A1	chr4	152403800	+	DDX60	chr4	169146827	-
5UTR-intron	ENST00000435205	ENST00000505393		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	FAM160A1	chr4	152403800	+	DDX60	chr4	169146827	-
intron-3CDS	ENST00000505231	ENST00000393743		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	FAM160A1	chr4	152403800	+	DDX60	chr4	169146827	-
intron-intron	ENST00000505231	ENST00000505393		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	FAM160A1	chr4	152403800	+	DDX60	chr4	169146827	-
5UTR-intron	ENST00000064778	ENST00000446507		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000064778	ENST00000441198		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000064778	ENST00000304672		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000450446	ENST00000446507		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000450446	ENST00000441198		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000450446	ENST00000304672		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000356467	ENST00000446507		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000356467	ENST00000441198		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
5UTR-intron	ENST00000356467	ENST00000304672		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890765	+
intron-3CDS	ENST00000416284	ENST00000370363		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000416284	ENST00000370359		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000551619	ENST00000370363		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000551619	ENST00000370359		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000550003	ENST00000370363		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000550003	ENST00000370359		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000551449	ENST00000370363		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000551449	ENST00000370359		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000549456	ENST00000370363		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000549456	ENST00000370359		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	FAM19A2	chr12	62417433	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000595437	ENST00000263593		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000595437	ENST00000545756		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000595437	ENST00000525730		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000376586	ENST00000263593		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376586	ENST00000545756		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376586	ENST00000525730		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
In-frame	ENST00000319562	ENST00000263593		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000319562	ENST00000545756		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000319562	ENST00000525730		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000376581	ENST00000263593		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376581	ENST00000545756		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376581	ENST00000525730		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000593990	ENST00000263593		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-intron	ENST00000593990	ENST00000545756		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
intron-intron	ENST00000593990	ENST00000525730		TCGA	RV	BRCA	TCGA-E2-A154-01A	FARP1	chr13	99102023	+	SIAE	chr11	124543777	-
5UTR-3UTR	ENST00000355619	ENST00000477333		TCGA	RV	BRCA	TCGA-E2-A2P6-01A	FBXL3	chr13	77600962	-	KLF5	chr13	73635999	+
5UTR-5UTR	ENST00000355619	ENST00000539231		TCGA	RV	BRCA	TCGA-E2-A2P6-01A	FBXL3	chr13	77600962	-	KLF5	chr13	73635999	+
5UTR-5UTR	ENST00000355619	ENST00000377687		TCGA	RV	BRCA	TCGA-E2-A2P6-01A	FBXL3	chr13	77600962	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000477982	ENST00000477333		TCGA	RV	BRCA	TCGA-E2-A2P6-01A	FBXL3	chr13	77600962	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000477982	ENST00000539231		TCGA	RV	BRCA	TCGA-E2-A2P6-01A	FBXL3	chr13	77600962	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000477982	ENST00000377687		TCGA	RV	BRCA	TCGA-E2-A2P6-01A	FBXL3	chr13	77600962	-	KLF5	chr13	73635999	+
In-frame	ENST00000309909	ENST00000547956		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000309909	ENST00000549260		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000309909	ENST00000303694		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
In-frame	ENST00000309909	ENST00000546689		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
5CDS-intron	ENST00000309909	ENST00000550711		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
In-frame	ENST00000455858	ENST00000547956		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000455858	ENST00000549260		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000455858	ENST00000303694		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
In-frame	ENST00000455858	ENST00000546689		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
5CDS-intron	ENST00000455858	ENST00000550711		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000551773	ENST00000547956		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000551773	ENST00000549260		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000551773	ENST00000303694		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000551773	ENST00000546689		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
intron-intron	ENST00000551773	ENST00000550711		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	FBXW8	chr12	117426674	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000538689	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000538689	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000538689	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000538689	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000538689	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000220584	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000220584	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000220584	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-5UTR	ENST00000220584	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-intron	ENST00000220584	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000446331	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000446331	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000446331	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000446331	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000446331	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000443614	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000443614	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000443614	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-5UTR	ENST00000443614	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-intron	ENST00000443614	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525900	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525900	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525900	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000525900	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000525900	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528812	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528812	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528812	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000528812	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000528812	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000530664	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000530664	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000530664	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000530664	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000530664	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528643	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528643	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528643	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000528643	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000528643	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525777	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525777	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525777	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000525777	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000525777	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-06A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
3UTR-3CDS	ENST00000474476	ENST00000027335		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
3UTR-3CDS	ENST00000474476	ENST00000441892		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
3UTR-3CDS	ENST00000474476	ENST00000450165		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000371218	ENST00000027335		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000371218	ENST00000441892		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000371218	ENST00000450165		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000303721	ENST00000027335		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000303721	ENST00000441892		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000303721	ENST00000450165		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000371212	ENST00000027335		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000371212	ENST00000441892		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
In-frame	ENST00000371212	ENST00000450165		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
intron-3CDS	ENST00000371210	ENST00000027335		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
intron-3CDS	ENST00000371210	ENST00000441892		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
intron-3CDS	ENST00000371210	ENST00000450165		TCGA	RV	BRCA	TCGA-D8-A4Z1-01A	FGGY	chr1	59978111	+	CDH17	chr8	95174390	-
5CDS-intron	ENST00000421182	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000421182	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000421182	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000357867	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000357867	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000357867	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000323926	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000323926	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000323926	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000336916	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000336916	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000336916	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000354785	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000354785	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000354785	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000357009	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000357009	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000357009	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000346544	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000346544	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000346544	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345488	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345488	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345488	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000359671	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000359671	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000359671	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000446046	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000446046	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000446046	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000443816	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000443816	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000443816	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000432072	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000432072	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000432072	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000356005	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000356005	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000356005	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000490833	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000490833	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000490833	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000426059	ENST00000233057		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000426059	ENST00000395127		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000426059	ENST00000405334		TCGA	RV	BRCA	TCGA-A8-A097-01A	FN1	chr2	216225163	-	EIF2AK2	chr2	37342384	-
In-frame	ENST00000264433	ENST00000344442		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
In-frame	ENST00000264433	ENST00000509061		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
In-frame	ENST00000264433	ENST00000324052		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
5CDS-intron	ENST00000264433	ENST00000503898		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
In-frame	ENST00000379346	ENST00000344442		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
In-frame	ENST00000379346	ENST00000509061		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
In-frame	ENST00000379346	ENST00000324052		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
5CDS-intron	ENST00000379346	ENST00000503898		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
intron-3CDS	ENST00000505445	ENST00000344442		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
intron-3CDS	ENST00000505445	ENST00000509061		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
intron-3CDS	ENST00000505445	ENST00000324052		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
intron-intron	ENST00000505445	ENST00000503898		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	FNIP2	chr4	159756628	+	LARP7	chr4	113571617	+
5CDS-5UTR	ENST00000372572	ENST00000357206		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000372572	ENST00000287727		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000372572	ENST00000371591		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000372572	ENST00000469134		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000372573	ENST00000357206		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000372573	ENST00000287727		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000372573	ENST00000371591		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000372573	ENST00000469134		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000361346	ENST00000357206		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000361346	ENST00000287727		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000361346	ENST00000371591		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000361346	ENST00000469134		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000361776	ENST00000357206		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000361776	ENST00000287727		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000361776	ENST00000371591		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000361776	ENST00000469134		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000545068	ENST00000357206		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000545068	ENST00000287727		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000545068	ENST00000371591		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000545068	ENST00000469134		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
intron-5UTR	ENST00000372571	ENST00000357206		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
intron-5UTR	ENST00000372571	ENST00000287727		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
intron-intron	ENST00000372571	ENST00000371591		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
intron-intron	ENST00000372571	ENST00000469134		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	FOXJ3	chr1	42730786	-	ZFYVE9	chr1	52682041	+
In-frame	ENST00000314167	ENST00000330909		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
In-frame	ENST00000314167	ENST00000402939		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
In-frame	ENST00000314167	ENST00000483466		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
In-frame	ENST00000314167	ENST00000497477		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
5CDS-5UTR	ENST00000314167	ENST00000470990		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000511163	ENST00000330909		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000511163	ENST00000402939		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000511163	ENST00000483466		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000511163	ENST00000497477		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-5UTR	ENST00000511163	ENST00000470990		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000509566	ENST00000330909		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000509566	ENST00000402939		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000509566	ENST00000483466		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000509566	ENST00000497477		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-5UTR	ENST00000509566	ENST00000470990		TCGA	RV	BRCA	TCGA-A8-A07R-01A	GAK	chr4	905461	-	MAGI1	chr3	65607763	-
intron-3CDS	ENST00000379284	ENST00000275016		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
intron-intron	ENST00000379284	ENST00000489657		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
In-frame	ENST00000379287	ENST00000275016		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
5CDS-intron	ENST00000379287	ENST00000489657		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
In-frame	ENST00000603223	ENST00000275016		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
5CDS-intron	ENST00000603223	ENST00000489657		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
intron-3CDS	ENST00000379278	ENST00000275016		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
intron-intron	ENST00000379278	ENST00000489657		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46610035	-
intron-intron	ENST00000331872	ENST00000233057		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000331872	ENST00000395127		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000331872	ENST00000405334		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000417584	ENST00000233057		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000417584	ENST00000395127		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000417584	ENST00000405334		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000311223	ENST00000233057		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000311223	ENST00000395127		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000311223	ENST00000405334		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000491322	ENST00000233057		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000491322	ENST00000395127		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000491322	ENST00000405334		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000339526	ENST00000233057		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000339526	ENST00000395127		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000339526	ENST00000405334		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	GLUL	chr1	182352029	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000530927	ENST00000449981		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
Frame-shit	ENST00000530927	ENST00000359357		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
Frame-shit	ENST00000530927	ENST00000441566		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
Frame-shit	ENST00000380815	ENST00000449981		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
Frame-shit	ENST00000380815	ENST00000359357		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
Frame-shit	ENST00000380815	ENST00000441566		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
intron-3CDS	ENST00000467288	ENST00000449981		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
intron-3CDS	ENST00000467288	ENST00000359357		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
intron-3CDS	ENST00000467288	ENST00000441566		TCGA	RV	BRCA	TCGA-A8-A08X-01A	GMDS	chr6	2116005	-	DNAH8	chr6	38919094	+
Frame-shit	ENST00000340645	ENST00000291458		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000340645	ENST00000497726		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000340645	ENST00000466854		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000340645	ENST00000479899		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
Frame-shit	ENST00000393667	ENST00000291458		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000393667	ENST00000497726		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000393667	ENST00000466854		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000393667	ENST00000479899		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
intron-3CDS	ENST00000472829	ENST00000291458		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
intron-intron	ENST00000472829	ENST00000497726		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
intron-intron	ENST00000472829	ENST00000466854		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
intron-intron	ENST00000472829	ENST00000479899		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	GOLGB1	chr3	121409517	-	CCDC58	chr3	122090647	-
5CDS-intron	ENST00000355904	ENST00000327671		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
5CDS-intron	ENST00000355904	ENST00000518672		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
5CDS-intron	ENST00000355904	ENST00000524021		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
5CDS-intron	ENST00000355904	ENST00000335589		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
5CDS-5UTR	ENST00000355904	ENST00000518076		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
intron-intron	ENST00000522833	ENST00000327671		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
intron-intron	ENST00000522833	ENST00000518672		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
intron-intron	ENST00000522833	ENST00000524021		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
intron-intron	ENST00000522833	ENST00000335589		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
intron-5UTR	ENST00000522833	ENST00000518076		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	FUT10	chr8	33251773	-
Frame-shit	ENST00000504156	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000504156	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000504156	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000504156	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000504156	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000457527	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000457527	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000457527	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000457527	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000457527	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000431330	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000431330	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000431330	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000431330	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000431330	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
intron-3CDS	ENST00000504366	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
intron-3CDS	ENST00000504366	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
intron-3CDS	ENST00000504366	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
intron-3CDS	ENST00000504366	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
intron-3CDS	ENST00000504366	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
5UTR-3CDS	ENST00000448240	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
5UTR-3CDS	ENST00000448240	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
5UTR-3CDS	ENST00000448240	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
5UTR-3CDS	ENST00000448240	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
5UTR-3CDS	ENST00000448240	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000307633	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000307633	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000307633	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000307633	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000307633	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000438307	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000438307	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000438307	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000438307	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000438307	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000415192	ENST00000523094		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000415192	ENST00000530742		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000415192	ENST00000296951		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000415192	ENST00000411809		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
Frame-shit	ENST00000415192	ENST00000523908		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	HARS	chr5	140070440	-	CLINT1	chr5	157221980	-
5CDS-intron	ENST00000299192	ENST00000531610		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	HEATR3	chr16	50100450	+	CHRNB3	chr8	42585737	+
5CDS-intron	ENST00000299192	ENST00000289957		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	HEATR3	chr16	50100450	+	CHRNB3	chr8	42585737	+
intron-intron	ENST00000285767	ENST00000531610		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	HEATR3	chr16	50100450	+	CHRNB3	chr8	42585737	+
intron-intron	ENST00000285767	ENST00000289957		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	HEATR3	chr16	50100450	+	CHRNB3	chr8	42585737	+
intron-intron	ENST00000564942	ENST00000531610		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	HEATR3	chr16	50100450	+	CHRNB3	chr8	42585737	+
intron-intron	ENST00000564942	ENST00000289957		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	HEATR3	chr16	50100450	+	CHRNB3	chr8	42585737	+
5CDS-intron	ENST00000443617	ENST00000303052		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	CSNK1G1	chr15	64658274	-
5CDS-intron	ENST00000443617	ENST00000607537		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	CSNK1G1	chr15	64658274	-
5CDS-intron	ENST00000443617	ENST00000303032		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	HERC1	chr15	63970044	-	CSNK1G1	chr15	64658274	-
intron-3CDS	ENST00000525975	ENST00000317204		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000525975	ENST00000527886		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000525975	ENST00000525159		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000525975	ENST00000263646		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000525975	ENST00000542915		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000525975	ENST00000527938		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000525975	ENST00000528719		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-3CDS	ENST00000379016	ENST00000317204		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000379016	ENST00000527886		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000379016	ENST00000525159		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000379016	ENST00000263646		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000379016	ENST00000542915		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000379016	ENST00000527938		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000379016	ENST00000528719		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-3CDS	ENST00000303296	ENST00000317204		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000303296	ENST00000527886		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000303296	ENST00000525159		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000303296	ENST00000263646		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000303296	ENST00000542915		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000303296	ENST00000527938		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000303296	ENST00000528719		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-3CDS	ENST00000456517	ENST00000317204		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000456517	ENST00000527886		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000456517	ENST00000525159		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000456517	ENST00000263646		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000456517	ENST00000542915		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000456517	ENST00000527938		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000456517	ENST00000528719		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-3CDS	ENST00000534262	ENST00000317204		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000534262	ENST00000527886		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000534262	ENST00000525159		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534262	ENST00000263646		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534262	ENST00000542915		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534262	ENST00000527938		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534262	ENST00000528719		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	HIPK3	chr11	33279435	+	TOLLIP	chr11	1317024	-
5CDS-intron	ENST00000307602	ENST00000521746		TCGA	RV	BRCA	TCGA-E2-A15M-01A	HOOK3	chr8	42798588	+	PLEKHA2	chr8	38826110	+
5CDS-intron	ENST00000307602	ENST00000420274		TCGA	RV	BRCA	TCGA-E2-A15M-01A	HOOK3	chr8	42798588	+	PLEKHA2	chr8	38826110	+
5CDS-3UTR	ENST00000307602	ENST00000388745		TCGA	RV	BRCA	TCGA-E2-A15M-01A	HOOK3	chr8	42798588	+	PLEKHA2	chr8	38826110	+
intron-intron	ENST00000524839	ENST00000521746		TCGA	RV	BRCA	TCGA-E2-A15M-01A	HOOK3	chr8	42798588	+	PLEKHA2	chr8	38826110	+
intron-intron	ENST00000524839	ENST00000420274		TCGA	RV	BRCA	TCGA-E2-A15M-01A	HOOK3	chr8	42798588	+	PLEKHA2	chr8	38826110	+
intron-3UTR	ENST00000524839	ENST00000388745		TCGA	RV	BRCA	TCGA-E2-A15M-01A	HOOK3	chr8	42798588	+	PLEKHA2	chr8	38826110	+
In-frame	ENST00000268035	ENST00000372435		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000268035	ENST00000372428		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000268035	ENST00000372419		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000268035	ENST00000543248		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-intron	ENST00000268035	ENST00000372418		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
In-frame	ENST00000558762	ENST00000372435		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000558762	ENST00000372428		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000558762	ENST00000372419		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000558762	ENST00000543248		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-intron	ENST00000558762	ENST00000372418		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
intron-3CDS	ENST00000560432	ENST00000372435		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
intron-5UTR	ENST00000560432	ENST00000372428		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
intron-5UTR	ENST00000560432	ENST00000372419		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
intron-5UTR	ENST00000560432	ENST00000543248		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
intron-intron	ENST00000560432	ENST00000372418		TCGA	RV	BRCA	TCGA-A8-A09E-01A	IGF1R	chr15	99486281	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000444766	ENST00000307078		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	INTS2	chr17	59989301	-	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000444766	ENST00000375702		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	INTS2	chr17	59989301	-	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000251334	ENST00000307078		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	INTS2	chr17	59989301	-	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000251334	ENST00000375702		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	INTS2	chr17	59989301	-	AXIN2	chr17	63554854	-
intron-5UTR	ENST00000466202	ENST00000451558		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
intron-5UTR	ENST00000466202	ENST00000434204		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
intron-5UTR	ENST00000466202	ENST00000451215		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
intron-5UTR	ENST00000466202	ENST00000540573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
intron-5UTR	ENST00000466202	ENST00000275699		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000324698	ENST00000451558		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000324698	ENST00000434204		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000324698	ENST00000451215		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000324698	ENST00000540573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000324698	ENST00000275699		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000434450	ENST00000451558		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000434450	ENST00000434204		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000434450	ENST00000451215		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000434450	ENST00000540573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000434450	ENST00000275699		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000488987	ENST00000451558		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000488987	ENST00000434204		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000488987	ENST00000451215		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000488987	ENST00000540573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
5UTR-5UTR	ENST00000488987	ENST00000275699		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	IQUB	chr7	123174546	-	ASB15	chr7	123254555	+
3UTR-3CDS	ENST00000483354	ENST00000417740		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
3UTR-intron	ENST00000483354	ENST00000326192		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
In-frame	ENST00000380113	ENST00000417740		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
5CDS-intron	ENST00000380113	ENST00000326192		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
In-frame	ENST00000455664	ENST00000417740		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
5CDS-intron	ENST00000455664	ENST00000326192		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
In-frame	ENST00000399838	ENST00000417740		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
5CDS-intron	ENST00000399838	ENST00000326192		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	ITPA	chr20	3194704	+	SLC22A24	chr11	62847469	-
Frame-shit	ENST00000361999	ENST00000592782		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
Frame-shit	ENST00000361999	ENST00000258960		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
5CDS-3UTR	ENST00000361999	ENST00000590114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
Frame-shit	ENST00000355123	ENST00000592782		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
Frame-shit	ENST00000355123	ENST00000258960		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
5CDS-3UTR	ENST00000355123	ENST00000590114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
Frame-shit	ENST00000406921	ENST00000592782		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
Frame-shit	ENST00000406921	ENST00000258960		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
5CDS-3UTR	ENST00000406921	ENST00000590114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
intron-3CDS	ENST00000407704	ENST00000592782		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
intron-3CDS	ENST00000407704	ENST00000258960		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
intron-3UTR	ENST00000407704	ENST00000590114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	ITSN2	chr2	24468998	-	NMT1	chr17	43171053	+
Frame-shit	ENST00000409556	ENST00000376826		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
5CDS-5UTR	ENST00000409556	ENST00000428343		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
Frame-shit	ENST00000312912	ENST00000376826		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
5CDS-5UTR	ENST00000312912	ENST00000428343		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
Frame-shit	ENST00000409064	ENST00000376826		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
5CDS-5UTR	ENST00000409064	ENST00000428343		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
Frame-shit	ENST00000542128	ENST00000376826		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
5CDS-5UTR	ENST00000542128	ENST00000428343		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
intron-3CDS	ENST00000485171	ENST00000376826		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
intron-5UTR	ENST00000485171	ENST00000428343		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	KDM3A	chr2	86694006	+	RFX8	chr2	102083362	-
In-frame	ENST00000398148	ENST00000423145		TCGA	RV	BRCA	TCGA-AO-A03N-01B	KHSRP	chr19	6418494	-	CD70	chr19	6590147	-
In-frame	ENST00000398148	ENST00000245903		TCGA	RV	BRCA	TCGA-AO-A03N-01B	KHSRP	chr19	6418494	-	CD70	chr19	6590147	-
Frame-shit	ENST00000332180	ENST00000406775		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
Frame-shit	ENST00000332180	ENST00000342771		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
Frame-shit	ENST00000332180	ENST00000403018		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
5CDS-intron	ENST00000332180	ENST00000489774		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
intron-3CDS	ENST00000547171	ENST00000406775		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
intron-3CDS	ENST00000547171	ENST00000342771		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
intron-3CDS	ENST00000547171	ENST00000403018		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
intron-intron	ENST00000547171	ENST00000489774		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	KIAA1033	chr12	105501639	+	AUTS2	chr7	69583118	+
5CDS-intron	ENST00000264963	ENST00000475040		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
5CDS-intron	ENST00000264963	ENST00000272418		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
5CDS-intron	ENST00000377079	ENST00000475040		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
5CDS-intron	ENST00000377079	ENST00000272418		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
intron-intron	ENST00000426463	ENST00000475040		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
intron-intron	ENST00000426463	ENST00000272418		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
5CDS-intron	ENST00000537039	ENST00000475040		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
5CDS-intron	ENST00000537039	ENST00000272418		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
intron-intron	ENST00000534882	ENST00000475040		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
intron-intron	ENST00000534882	ENST00000272418		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	LMAN2L	chr2	97399256	-	MRPS5	chr2	95774153	-
Frame-shit	ENST00000368301	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000368301	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000361308	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000361308	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000347559	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000347559	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000368300	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000368300	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000368299	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000368299	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-3CDS	ENST00000448611	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-5UTR	ENST00000448611	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-3CDS	ENST00000368297	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-5UTR	ENST00000368297	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-3CDS	ENST00000473598	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-5UTR	ENST00000473598	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-3CDS	ENST00000392353	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-5UTR	ENST00000392353	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-3CDS	ENST00000496738	ENST00000368324		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
intron-5UTR	ENST00000496738	ENST00000539162		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	LMNA	chr1	156085065	+	SYT11	chr1	155850291	+
5CDS-3UTR	ENST00000239367	ENST00000367351		TCGA	RV	BRCA	TCGA-A8-A07F-01A	LRP11	chr6	150147400	-	ULBP2	chr6	150269859	+
5CDS-3UTR	ENST00000546019	ENST00000367351		TCGA	RV	BRCA	TCGA-A8-A07F-01A	LRP11	chr6	150147400	-	ULBP2	chr6	150269859	+
intron-3UTR	ENST00000463728	ENST00000367351		TCGA	RV	BRCA	TCGA-A8-A07F-01A	LRP11	chr6	150147400	-	ULBP2	chr6	150269859	+
intron-3UTR	ENST00000367368	ENST00000367351		TCGA	RV	BRCA	TCGA-A8-A07F-01A	LRP11	chr6	150147400	-	ULBP2	chr6	150269859	+
Frame-shit	ENST00000294304	ENST00000535633		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
Frame-shit	ENST00000294304	ENST00000424319		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
Frame-shit	ENST00000294304	ENST00000343727		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
Frame-shit	ENST00000294304	ENST00000534731		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000525196		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000263317		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000532825		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000527956		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000542487		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000527626		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000528341		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000413594		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000375979		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000531342		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000294304	ENST00000393282		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-3CDS	ENST00000529481	ENST00000535633		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-3CDS	ENST00000529481	ENST00000424319		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-3CDS	ENST00000529481	ENST00000343727		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-3CDS	ENST00000529481	ENST00000534731		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000525196		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000263317		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000532825		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000527956		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000542487		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000527626		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000528341		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000413594		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000375979		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000531342		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
intron-intron	ENST00000529481	ENST00000393282		TCGA	RV	BRCA	TCGA-BH-A18L-01A	LRP5	chr11	68207384	+	NOX4	chr11	89088211	-
5CDS-5UTR	ENST00000370888	ENST00000274867		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370888	ENST00000398904		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370888	ENST00000538976		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370888	ENST00000405961		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370888	ENST00000494405		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370882	ENST00000274867		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370882	ENST00000398904		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370882	ENST00000538976		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370882	ENST00000405961		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
5CDS-5UTR	ENST00000370882	ENST00000494405		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	LRRC1	chr6	53707025	+	DAAM2	chr6	39824023	+
Frame-shit	ENST00000370888	ENST00000380250		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
5CDS-intron	ENST00000370888	ENST00000463566		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
5CDS-intron	ENST00000370888	ENST00000542859		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
5CDS-intron	ENST00000370888	ENST00000380217		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
Frame-shit	ENST00000370882	ENST00000380250		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
5CDS-intron	ENST00000370882	ENST00000463566		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
5CDS-intron	ENST00000370882	ENST00000542859		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
5CDS-intron	ENST00000370882	ENST00000380217		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	LRRC1	chr6	53660213	+	FRY	chr13	32705809	+
Frame-shit	ENST00000329474	ENST00000274747		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5CDS-intron	ENST00000329474	ENST00000543597		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5CDS-intron	ENST00000329474	ENST00000535061		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000329474	ENST00000483634		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000329474	ENST00000378353		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000329474	ENST00000378386		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000329474	ENST00000443868		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-3CDS	ENST00000377969	ENST00000274747		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-intron	ENST00000377969	ENST00000543597		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-intron	ENST00000377969	ENST00000535061		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-3UTR	ENST00000377969	ENST00000483634		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-3UTR	ENST00000377969	ENST00000378353		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-3UTR	ENST00000377969	ENST00000378386		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
5UTR-3UTR	ENST00000377969	ENST00000443868		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-3CDS	ENST00000476458	ENST00000274747		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-intron	ENST00000476458	ENST00000543597		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-intron	ENST00000476458	ENST00000535061		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000476458	ENST00000483634		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000476458	ENST00000378353		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000476458	ENST00000378386		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000476458	ENST00000443868		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LRRC16A	chr6	25285137	+	MRS2	chr6	24405396	+
In-frame	ENST00000505658	ENST00000285238		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000505658	ENST00000515707		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000505658	ENST00000427699		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000505658	ENST00000510891		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
In-frame	ENST00000393227	ENST00000285238		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000393227	ENST00000515707		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000393227	ENST00000427699		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000393227	ENST00000510891		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-3CDS	ENST00000311571	ENST00000285238		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-intron	ENST00000311571	ENST00000515707		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-intron	ENST00000311571	ENST00000427699		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-intron	ENST00000311571	ENST00000510891		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
In-frame	ENST00000240304	ENST00000285238		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000240304	ENST00000515707		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000240304	ENST00000427699		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000240304	ENST00000510891		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
In-frame	ENST00000544170	ENST00000285238		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000544170	ENST00000515707		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000544170	ENST00000427699		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
5CDS-intron	ENST00000544170	ENST00000510891		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-3CDS	ENST00000503798	ENST00000285238		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-intron	ENST00000503798	ENST00000515707		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-intron	ENST00000503798	ENST00000427699		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
intron-intron	ENST00000503798	ENST00000510891		TCGA	RV	BRCA	TCGA-AO-A128-01A	LUC7L3	chr17	48822174	+	ABCC3	chr17	48750332	+
In-frame	ENST00000255681	ENST00000394547		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
In-frame	ENST00000255681	ENST00000541278		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
In-frame	ENST00000255681	ENST00000394546		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
In-frame	ENST00000255681	ENST00000546133		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
In-frame	ENST00000255681	ENST00000317459		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
In-frame	ENST00000255681	ENST00000546089		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5CDS-intron	ENST00000255681	ENST00000540472		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-3CDS	ENST00000538595	ENST00000394547		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-3CDS	ENST00000538595	ENST00000541278		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-3CDS	ENST00000538595	ENST00000394546		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-3CDS	ENST00000538595	ENST00000546133		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-3CDS	ENST00000538595	ENST00000317459		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-3CDS	ENST00000538595	ENST00000546089		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
5UTR-intron	ENST00000538595	ENST00000540472		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MACROD1	chr11	63918711	-	TRPT1	chr11	63991813	-
intron-intron	ENST00000409947	ENST00000449833		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000409161		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000423696		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000338508		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000409530		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000449116		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000357171		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000409947	ENST00000468619		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000449833		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000409161		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000423696		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000338508		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000409530		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000449116		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000357171		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
intron-intron	ENST00000344908	ENST00000468619		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128145028	-	SHANK2	chr11	70830078	-
In-frame	ENST00000354570	ENST00000607772		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-5UTR	ENST00000354570	ENST00000479339		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-intron	ENST00000354570	ENST00000433165		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
In-frame	ENST00000454590	ENST00000607772		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-5UTR	ENST00000454590	ENST00000479339		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-intron	ENST00000454590	ENST00000433165		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
In-frame	ENST00000544465	ENST00000607772		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-5UTR	ENST00000544465	ENST00000479339		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-intron	ENST00000544465	ENST00000433165		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
In-frame	ENST00000438100	ENST00000607772		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-5UTR	ENST00000438100	ENST00000479339		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-intron	ENST00000438100	ENST00000433165		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
Frame-shit	ENST00000432797	ENST00000607772		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-5UTR	ENST00000432797	ENST00000479339		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-intron	ENST00000432797	ENST00000433165		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	MAP7	chr6	136686873	-	CNKSR3	chr6	154771392	-
5CDS-5UTR	ENST00000440884	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000440884	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000440884	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000416682	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000416682	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000416682	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000429436	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000429436	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000429436	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000303622	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000303622	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000303622	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000216288	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000216288	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000216288	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000553942	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000553942	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000553942	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000335102	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000335102	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000335102	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
3UTR-5UTR	ENST00000561071	ENST00000299204		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
3UTR-5UTR	ENST00000561071	ENST00000445922		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
3UTR-5UTR	ENST00000561071	ENST00000337322		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MARK3	chr14	103894777	+	BAG5	chr14	104027529	-
In-frame	ENST00000344683	ENST00000602723		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
In-frame	ENST00000344683	ENST00000400186		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
In-frame	ENST00000344683	ENST00000520002		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
In-frame	ENST00000344683	ENST00000602557		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
In-frame	ENST00000344683	ENST00000537824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
In-frame	ENST00000344683	ENST00000542608		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
In-frame	ENST00000344683	ENST00000539096		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
5CDS-intron	ENST00000344683	ENST00000523387		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000602723		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000400186		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000520002		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000602557		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000537824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000542608		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000519480	ENST00000539096		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-intron	ENST00000519480	ENST00000523387		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000602723		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000400186		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000520002		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000602557		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000537824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000542608		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000522905	ENST00000539096		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-intron	ENST00000522905	ENST00000523387		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000602723		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000400186		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000520002		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000602557		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000537824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000542608		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-3CDS	ENST00000521175	ENST00000539096		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
intron-intron	ENST00000521175	ENST00000523387		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	MCPH1	chr8	6312773	+	CSMD1	chr8	3351248	-
Frame-shit	ENST00000394126	ENST00000269033		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000394126	ENST00000540801		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000394126	ENST00000324677		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394126	ENST00000582084		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394126	ENST00000590153		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394126	ENST00000579954		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000356271	ENST00000269033		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000356271	ENST00000540801		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000356271	ENST00000324677		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000356271	ENST00000582084		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000356271	ENST00000590153		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000356271	ENST00000579954		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000394128	ENST00000269033		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000394128	ENST00000540801		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000394128	ENST00000324677		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394128	ENST00000582084		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394128	ENST00000590153		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394128	ENST00000579954		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
In-frame	ENST00000394127	ENST00000269033		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
In-frame	ENST00000394127	ENST00000540801		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000394127	ENST00000324677		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394127	ENST00000582084		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394127	ENST00000590153		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394127	ENST00000579954		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000501516	ENST00000269033		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000501516	ENST00000540801		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000501516	ENST00000324677		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000501516	ENST00000582084		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000501516	ENST00000590153		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000501516	ENST00000579954		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5UTR-3CDS	ENST00000479829	ENST00000269033		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5UTR-3CDS	ENST00000479829	ENST00000540801		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5UTR-5UTR	ENST00000479829	ENST00000324677		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5UTR-intron	ENST00000479829	ENST00000582084		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5UTR-intron	ENST00000479829	ENST00000590153		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
5UTR-intron	ENST00000479829	ENST00000579954		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	MED24	chr17	38209551	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000290663	ENST00000456518		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000397174		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000402904		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000361191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000397171		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000361705		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000326197		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000372595		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000337495		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000372596		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000290663	ENST00000372597		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000290663	ENST00000472037		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000456518		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000397174		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000402904		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000361191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000397171		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000361705		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000326197		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000372595		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000337495		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000372596		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372457	ENST00000372597		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-5UTR	ENST00000372457	ENST00000472037		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000456518		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000397174		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000402904		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000361191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000397171		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000361705		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000326197		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000372595		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000337495		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000372596		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000372455	ENST00000372597		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
intron-5UTR	ENST00000372455	ENST00000472037		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MED8	chr1	43850717	-	SCMH1	chr1	41494398	-
In-frame	ENST00000344191	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000344191	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000344191	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000344191	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000344191	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000344191	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000344191	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000344191	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000351017	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000351017	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000351017	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000351017	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000351017	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000351017	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000351017	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000351017	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392108	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392108	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392108	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392108	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392108	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392108	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000392108	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000392108	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392112	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392112	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392112	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392112	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392112	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000392112	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000392112	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000392112	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000366806	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000366806	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000366806	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000366806	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000366806	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000366806	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000366806	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000366806	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000447894	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000447894	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000447894	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000447894	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000447894	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000447894	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000447894	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000447894	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000400822	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000400822	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000400822	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000400822	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000400822	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000400822	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000400822	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
5CDS-intron	ENST00000400822	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000507679	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000507679	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000507679	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000507679	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000507679	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000507679	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-intron	ENST00000507679	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
intron-intron	ENST00000507679	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A07C-01A	MLLT4	chr6	168271178	+	HMGCLL1	chr6	55406938	-
In-frame	ENST00000378531	ENST00000371873		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000378531	ENST00000450808		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000378531	ENST00000471289		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5UTR-3CDS	ENST00000606372	ENST00000371873		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5UTR-intron	ENST00000606372	ENST00000450808		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5UTR-intron	ENST00000606372	ENST00000471289		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
In-frame	ENST00000378529	ENST00000371873		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000378529	ENST00000450808		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000378529	ENST00000471289		TCGA	RV	BRCA	TCGA-E9-A1N9-01A	MORN1	chr1	2316417	-	CMPK1	chr1	47834141	+
In-frame	ENST00000310614	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A092-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000336273	ENST00000311812		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	MTDH	chr8	98657115	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000336273	ENST00000428383		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	MTDH	chr8	98657115	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000336273	ENST00000519521		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	MTDH	chr8	98657115	+	SNX31	chr8	101648239	-
In-frame	ENST00000519934	ENST00000311812		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	MTDH	chr8	98657115	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000519934	ENST00000428383		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	MTDH	chr8	98657115	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000519934	ENST00000519521		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	MTDH	chr8	98657115	+	SNX31	chr8	101648239	-
Frame-shit	ENST00000354329	ENST00000225388		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000354329	ENST00000579665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000529578	ENST00000225388		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000529578	ENST00000579665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000533112	ENST00000225388		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000533112	ENST00000579665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000531253	ENST00000225388		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000531253	ENST00000579665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000527372	ENST00000225388		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000527372	ENST00000579665		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	MYO18A	chr17	27492960	-	NUFIP2	chr17	27594548	-
5UTR-3CDS	ENST00000369981	ENST00000370010		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000370014		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000447266		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000541192		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369981	ENST00000327284		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369981	ENST00000436928		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000370010		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000370014		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000447266		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000541192		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369985	ENST00000327284		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369985	ENST00000436928		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000370010		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000370014		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000447266		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000541192		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369977	ENST00000327284		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369977	ENST00000436928		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000370010		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000370014		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000447266		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000541192		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000369975	ENST00000327284		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000369975	ENST00000436928		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000541192		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000462633	ENST00000327284		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
In-frame	ENST00000409709	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
In-frame	ENST00000409709	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
5CDS-intron	ENST00000409709	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
intron-3CDS	ENST00000409893	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
intron-3CDS	ENST00000409893	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
intron-intron	ENST00000409893	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
In-frame	ENST00000458637	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
In-frame	ENST00000458637	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
5CDS-intron	ENST00000458637	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
In-frame	ENST00000409619	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
In-frame	ENST00000409619	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
5CDS-intron	ENST00000409619	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
3UTR-3CDS	ENST00000605744	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
3UTR-3CDS	ENST00000605744	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
3UTR-intron	ENST00000605744	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	MYO7A	chr11	76924080	+	GAB2	chr11	77934722	-
5UTR-3CDS	ENST00000406961	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
3UTR-3CDS	ENST00000469850	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
5UTR-3CDS	ENST00000405141	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
5UTR-3CDS	ENST00000407230	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
5UTR-3CDS	ENST00000538539	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
intron-3CDS	ENST00000288599	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
intron-3CDS	ENST00000348332	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
intron-3CDS	ENST00000395856	ENST00000274710		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139201478	+
In-frame	ENST00000357731	ENST00000326665		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
5CDS-intron	ENST00000357731	ENST00000433746		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
5CDS-intron	ENST00000357731	ENST00000420661		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
intron-3CDS	ENST00000306821	ENST00000326665		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
intron-intron	ENST00000306821	ENST00000433746		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
intron-intron	ENST00000306821	ENST00000420661		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
In-frame	ENST00000434200	ENST00000326665		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
5CDS-intron	ENST00000434200	ENST00000433746		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
5CDS-intron	ENST00000434200	ENST00000420661		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
intron-3CDS	ENST00000467479	ENST00000326665		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
intron-intron	ENST00000467479	ENST00000433746		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
intron-intron	ENST00000467479	ENST00000420661		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NEGR1	chr1	72748002	-	C1orf173	chr1	75114999	-
In-frame	ENST00000356175	ENST00000321990		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NF1	chr17	29497015	+	ATAD5	chr17	29192722	+
In-frame	ENST00000358273	ENST00000321990		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NF1	chr17	29497015	+	ATAD5	chr17	29192722	+
In-frame	ENST00000431387	ENST00000321990		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NF1	chr17	29497015	+	ATAD5	chr17	29192722	+
intron-3CDS	ENST00000581113	ENST00000321990		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NF1	chr17	29497015	+	ATAD5	chr17	29192722	+
intron-3CDS	ENST00000417592	ENST00000321990		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NF1	chr17	29497015	+	ATAD5	chr17	29192722	+
intron-3CDS	ENST00000444181	ENST00000321990		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NF1	chr17	29497015	+	ATAD5	chr17	29192722	+
5CDS-intron	ENST00000371191	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000371191	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000407417	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000407417	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000479364	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000479364	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000371189	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000371189	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000403491	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000403491	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000371187	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000371187	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000485903	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000485903	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000371185	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000371185	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000371184	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000371184	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-intron	ENST00000357977	ENST00000328299		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5CDS-3UTR	ENST00000357977	ENST00000464140		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	NFIA	chr1	61872399	+	ST6GALNAC3	chr1	77042531	+
5UTR-3CDS	ENST00000282516	ENST00000251195		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000466308		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000373220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000520551		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000318121		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-3CDS	ENST00000448238	ENST00000251195		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000466308		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000373220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000520551		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000318121		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-3CDS	ENST00000504430	ENST00000251195		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000466308		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000373220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000520551		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000318121		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
3UTR-3CDS	ENST00000519049	ENST00000260126		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
3UTR-3CDS	ENST00000519049	ENST00000524945		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
3UTR-intron	ENST00000519049	ENST00000530307		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
3UTR-intron	ENST00000519049	ENST00000528658		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000523211	ENST00000260126		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000523211	ENST00000524945		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000523211	ENST00000530307		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000523211	ENST00000528658		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000328472	ENST00000260126		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000328472	ENST00000524945		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000328472	ENST00000530307		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000328472	ENST00000528658		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	NKAIN3	chr8	63659688	+	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000371527	ENST00000371558		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-intron	ENST00000371527	ENST00000346330		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-intron	ENST00000371527	ENST00000469205		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-5UTR	ENST00000371527	ENST00000371569		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
Frame-shit	ENST00000304449	ENST00000371558		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-intron	ENST00000304449	ENST00000346330		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-intron	ENST00000304449	ENST00000469205		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-5UTR	ENST00000304449	ENST00000371569		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
Frame-shit	ENST00000542113	ENST00000371558		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-intron	ENST00000542113	ENST00000346330		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-intron	ENST00000542113	ENST00000469205		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5CDS-5UTR	ENST00000542113	ENST00000371569		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
intron-3CDS	ENST00000487600	ENST00000371558		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
intron-intron	ENST00000487600	ENST00000346330		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
intron-intron	ENST00000487600	ENST00000469205		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
intron-5UTR	ENST00000487600	ENST00000371569		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	NKRF	chrX	118726346	-	UBE2A	chrX	118715470	+
5UTR-3CDS	ENST00000379028	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379028	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379028	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379028	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379028	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000413765	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000413765	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000413765	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000413765	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000413765	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000351718	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000351718	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000351718	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000351718	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000351718	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379024	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379024	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379024	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379024	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379024	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379022	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379022	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379022	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379022	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
5UTR-3CDS	ENST00000379022	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000425651	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000425651	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000425651	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000425651	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000425651	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000522550	ENST00000380672		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000522550	ENST00000380667		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000522550	ENST00000545497		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000522550	ENST00000380666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
intron-3CDS	ENST00000522550	ENST00000471301		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	NRCAM	chr7	108096687	-	BNC2	chr9	16583083	-
In-frame	ENST00000281081	ENST00000458591		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
In-frame	ENST00000281081	ENST00000421551		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
In-frame	ENST00000281081	ENST00000544052		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
In-frame	ENST00000281081	ENST00000541123		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
In-frame	ENST00000281081	ENST00000396629		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
5CDS-3UTR	ENST00000281081	ENST00000554486		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000536705	ENST00000458591		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000536705	ENST00000421551		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000536705	ENST00000544052		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000536705	ENST00000541123		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000536705	ENST00000396629		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3UTR	ENST00000536705	ENST00000554486		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000418681	ENST00000458591		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000418681	ENST00000421551		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000418681	ENST00000544052		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000418681	ENST00000541123		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000418681	ENST00000396629		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
intron-3UTR	ENST00000418681	ENST00000554486		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	NUBPL	chr14	32034254	+	SCFD1	chr14	31163979	+
In-frame	ENST00000239690	ENST00000296582		TCGA	RV	BRCA	TCGA-E2-A1LH-01A	NUDCD1	chr8	110334538	-	TMEM184C	chr4	148544985	+
In-frame	ENST00000239690	ENST00000508208		TCGA	RV	BRCA	TCGA-E2-A1LH-01A	NUDCD1	chr8	110334538	-	TMEM184C	chr4	148544985	+
In-frame	ENST00000427660	ENST00000296582		TCGA	RV	BRCA	TCGA-E2-A1LH-01A	NUDCD1	chr8	110334538	-	TMEM184C	chr4	148544985	+
In-frame	ENST00000427660	ENST00000508208		TCGA	RV	BRCA	TCGA-E2-A1LH-01A	NUDCD1	chr8	110334538	-	TMEM184C	chr4	148544985	+
5CDS-intron	ENST00000324932	ENST00000551577		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000324932	ENST00000266534		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000324932	ENST00000536799		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000324932	ENST00000546978		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000359171	ENST00000551577		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000359171	ENST00000266534		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000359171	ENST00000536799		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000359171	ENST00000546978		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000355260	ENST00000551577		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000355260	ENST00000266534		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000355260	ENST00000536799		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000355260	ENST00000546978		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000397004	ENST00000551577		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000397004	ENST00000266534		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000397004	ENST00000536799		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000397004	ENST00000546978		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000397007	ENST00000551577		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000397007	ENST00000266534		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000397007	ENST00000536799		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000397007	ENST00000546978		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
intron-intron	ENST00000488828	ENST00000551577		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
intron-intron	ENST00000488828	ENST00000266534		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
intron-intron	ENST00000488828	ENST00000536799		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
intron-3UTR	ENST00000488828	ENST00000546978		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUP98	chr11	3774546	-	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000371714	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371714	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371714	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371714	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371710	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371710	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371710	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000371710	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000337809	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000337809	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000337809	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000337809	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5UTR-intron	ENST00000435686	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5UTR-intron	ENST00000435686	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5UTR-intron	ENST00000435686	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5UTR-intron	ENST00000435686	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000447887	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000447887	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000447887	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000447887	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000453295	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000453295	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000453295	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000453295	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000428468	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000428468	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000428468	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-intron	ENST00000428468	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000530544	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000530544	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000530544	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000530544	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000531828	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000531828	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000531828	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000531828	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000361556	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000361556	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000361556	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000361556	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000473207	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000473207	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000473207	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000473207	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000462759	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000462759	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000462759	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000462759	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000486942	ENST00000486478		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000486942	ENST00000450089		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000486942	ENST00000371201		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
intron-intron	ENST00000486942	ENST00000395552		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	OSBPL9	chr1	52117713	+	C1orf87	chr1	60476128	-
5CDS-5UTR	ENST00000356341	ENST00000533902		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000356341	ENST00000280258		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000356341	ENST00000441050		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000356341	ENST00000531521		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-5UTR	ENST00000530617	ENST00000533902		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000530617	ENST00000280258		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000530617	ENST00000441050		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000530617	ENST00000531521		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-5UTR	ENST00000278568	ENST00000533902		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000278568	ENST00000280258		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000278568	ENST00000441050		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
5CDS-intron	ENST00000278568	ENST00000531521		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-5UTR	ENST00000528203	ENST00000533902		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-intron	ENST00000528203	ENST00000280258		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-intron	ENST00000528203	ENST00000441050		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-intron	ENST00000528203	ENST00000531521		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-5UTR	ENST00000525542	ENST00000533902		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-intron	ENST00000525542	ENST00000280258		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-intron	ENST00000525542	ENST00000441050		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
intron-intron	ENST00000525542	ENST00000531521		TCGA	RV	BRCA	TCGA-E2-A10E-01A	PAK1	chr11	77103376	-	PRSS23	chr11	86534419	+
Frame-shit	ENST00000545260	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545260	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545260	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545260	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545260	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545260	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545260	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000545260	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000545693	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000545693	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000350537	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000350537	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000346874	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000346874	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374789	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000374789	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374790	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000374790	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374794	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000374794	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374788	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000374788	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000466092	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-intron	ENST00000466092	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374776	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000374776	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000340077	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000340077	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000544292	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-intron	ENST00000544292	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
Frame-shit	ENST00000374773	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-intron	ENST00000374773	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000374746		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000374748		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000374749		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000374751		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000602371		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000374742		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-3CDS	ENST00000374768	ENST00000537177		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
intron-intron	ENST00000374768	ENST00000478044		TCGA	RV	BRCA	TCGA-OL-A66P-01A	PARD3	chr10	34985246	-	CUL2	chr10	35305322	-
5CDS-5UTR	ENST00000437198	ENST00000301732		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000437198	ENST00000382381		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-intron	ENST00000437198	ENST00000567910		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000420015	ENST00000301732		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000420015	ENST00000382381		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-intron	ENST00000420015	ENST00000567910		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000341484	ENST00000301732		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000341484	ENST00000382381		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-intron	ENST00000341484	ENST00000567910		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000539279	ENST00000301732		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000539279	ENST00000382381		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-intron	ENST00000539279	ENST00000567910		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
intron-5UTR	ENST00000566021	ENST00000301732		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
intron-5UTR	ENST00000566021	ENST00000382381		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
intron-intron	ENST00000566021	ENST00000567910		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PARN	chr16	14576495	-	ABCA3	chr16	2379855	-
5CDS-5UTR	ENST00000266269	ENST00000392491		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000607474		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000368452		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000368448		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000392490		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000258014		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000354275		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000266269	ENST00000368446		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-5UTR	ENST00000405309	ENST00000392491		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000607474		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000368452		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000368448		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000392490		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000258014		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000354275		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000405309	ENST00000368446		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-5UTR	ENST00000351933	ENST00000392491		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000607474		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000368452		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000368448		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000392490		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000258014		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000354275		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000351933	ENST00000368446		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-5UTR	ENST00000215919	ENST00000392491		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000607474		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000368452		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000368448		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000392490		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000258014		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000354275		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5CDS-intron	ENST00000215919	ENST00000368446		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	PATZ1	chr22	31738883	-	PKIB	chr6	122907066	+
5UTR-3CDS	ENST00000360540	ENST00000276480		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-intron	ENST00000360540	ENST00000522102		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
Frame-shit	ENST00000544451	ENST00000276480		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5CDS-intron	ENST00000544451	ENST00000522102		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-3CDS	ENST00000519559	ENST00000276480		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-intron	ENST00000519559	ENST00000522102		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-3CDS	ENST00000522514	ENST00000276480		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-intron	ENST00000522514	ENST00000522102		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-3CDS	ENST00000521344	ENST00000276480		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
5UTR-intron	ENST00000521344	ENST00000522102		TCGA	RV	BRCA	TCGA-AO-A128-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53079546	-
3UTR-3CDS	ENST00000541292	ENST00000354577		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000403834		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000368068		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000479213		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000368060		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000368058		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000545957		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000368053		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000540546		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
3UTR-intron	ENST00000541292	ENST00000539158		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
In-frame	ENST00000318471	ENST00000354577		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000403834		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000368068		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000479213		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000368060		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000368058		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000545957		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000368053		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000540546		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
5CDS-intron	ENST00000318471	ENST00000539158		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-3CDS	ENST00000367756	ENST00000354577		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000403834		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000368068		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000479213		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000368060		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000368058		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000545957		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000368053		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000540546		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
intron-intron	ENST00000367756	ENST00000539158		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PEX7	chr6	137219379	+	MED23	chr6	131895435	-
Frame-shit	ENST00000370812	ENST00000328299		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
5CDS-3UTR	ENST00000370812	ENST00000464140		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
Frame-shit	ENST00000445065	ENST00000328299		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
5CDS-3UTR	ENST00000445065	ENST00000464140		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
Frame-shit	ENST00000370813	ENST00000328299		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
5CDS-3UTR	ENST00000370813	ENST00000464140		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
intron-3CDS	ENST00000359130	ENST00000328299		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
intron-3UTR	ENST00000359130	ENST00000464140		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
intron-3CDS	ENST00000478391	ENST00000328299		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
intron-3UTR	ENST00000478391	ENST00000464140		TCGA	RV	BRCA	TCGA-LL-A6FP-01A	PIGK	chr1	77620134	-	ST6GALNAC3	chr1	76877693	+
5UTR-3CDS	ENST00000610247	ENST00000419488		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000610247	ENST00000354212		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000610247	ENST00000522391		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000610247	ENST00000536571		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000610247	ENST00000535697		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000610247	ENST00000517762		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000452089	ENST00000419488		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000452089	ENST00000354212		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000452089	ENST00000522391		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000452089	ENST00000536571		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000452089	ENST00000535697		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000452089	ENST00000517762		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
Frame-shit	ENST00000448382	ENST00000419488		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
Frame-shit	ENST00000448382	ENST00000354212		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
Frame-shit	ENST00000448382	ENST00000522391		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5CDS-intron	ENST00000448382	ENST00000536571		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5CDS-intron	ENST00000448382	ENST00000535697		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5CDS-intron	ENST00000448382	ENST00000517762		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000444073	ENST00000419488		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000444073	ENST00000354212		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-3CDS	ENST00000444073	ENST00000522391		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000444073	ENST00000536571		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000444073	ENST00000535697		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
5UTR-intron	ENST00000444073	ENST00000517762		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
intron-3CDS	ENST00000609309	ENST00000419488		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
intron-3CDS	ENST00000609309	ENST00000354212		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
intron-3CDS	ENST00000609309	ENST00000522391		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
intron-intron	ENST00000609309	ENST00000536571		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
intron-intron	ENST00000609309	ENST00000535697		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
intron-intron	ENST00000609309	ENST00000517762		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	PILRB	chr7	99954506	+	MAGI2	chr7	77824380	-
Frame-shit	ENST00000332509	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000332509	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000332509	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000335539	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000335539	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000335539	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000402064	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000402064	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000402064	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
intron-3CDS	ENST00000490473	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
intron-3CDS	ENST00000490473	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
intron-intron	ENST00000490473	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000436218	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
Frame-shit	ENST00000436218	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000436218	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
In-frame	ENST00000447598	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
In-frame	ENST00000447598	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000447598	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
In-frame	ENST00000435484	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
In-frame	ENST00000435484	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000435484	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
In-frame	ENST00000417303	ENST00000361906		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
In-frame	ENST00000417303	ENST00000361684		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000417303	ENST00000504337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PLA2G6	chr22	38565225	-	TMEM184B	chr22	38622877	-
5CDS-intron	ENST00000378641	ENST00000481038		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
5CDS-5UTR	ENST00000378641	ENST00000379019		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
5CDS-intron	ENST00000338037	ENST00000481038		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
5CDS-5UTR	ENST00000338037	ENST00000379019		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
5CDS-intron	ENST00000378637	ENST00000481038		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
5CDS-5UTR	ENST00000378637	ENST00000379019		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
intron-intron	ENST00000494924	ENST00000481038		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
intron-5UTR	ENST00000494924	ENST00000379019		TCGA	RV	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8131018	+	GPCPD1	chr20	5585086	-
In-frame	ENST00000521746	ENST00000449833		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000521746	ENST00000409161		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000521746	ENST00000423696		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000521746	ENST00000338508		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000521746	ENST00000409530		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000521746	ENST00000449116		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000521746	ENST00000357171		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000521746	ENST00000468619		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000449833		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000409161		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000423696		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000338508		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000409530		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000449116		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000420274	ENST00000357171		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000420274	ENST00000468619		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000449833		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000409161		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000423696		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000338508		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000409530		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000449116		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-3CDS	ENST00000388745	ENST00000357171		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
3UTR-intron	ENST00000388745	ENST00000468619		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	PLEKHA2	chr8	38775588	+	SHANK2	chr11	70349036	-
In-frame	ENST00000328257	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000328257	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
In-frame	ENST00000398427	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000398427	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
3UTR-3CDS	ENST00000542710	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
3UTR-5UTR	ENST00000542710	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
intron-3CDS	ENST00000543525	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
intron-5UTR	ENST00000543525	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	PPME1	chr11	73915490	+	NARS2	chr11	78239982	-
In-frame	ENST00000485511	ENST00000369162		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
In-frame	ENST00000485511	ENST00000522650		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
5CDS-intron	ENST00000485511	ENST00000369143		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
In-frame	ENST00000394110	ENST00000369162		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
In-frame	ENST00000394110	ENST00000522650		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
5CDS-intron	ENST00000394110	ENST00000369143		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
In-frame	ENST00000472118	ENST00000369162		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
In-frame	ENST00000472118	ENST00000522650		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
5CDS-intron	ENST00000472118	ENST00000369143		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
intron-3CDS	ENST00000461010	ENST00000369162		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
intron-3CDS	ENST00000461010	ENST00000522650		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
intron-intron	ENST00000461010	ENST00000369143		TCGA	RV	BRCA	TCGA-BH-A0BO-01A	PPP2R5D	chr6	42957426	+	ASCC3	chr6	101215221	-
5CDS-5UTR	ENST00000512215	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000512215	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000512215	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000394854	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000394854	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000394854	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000323055	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000323055	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000323055	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000394853	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000394853	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000394853	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5UTR-5UTR	ENST00000507176	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5UTR-5UTR	ENST00000507176	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5UTR-5UTR	ENST00000507176	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000523694	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000523694	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000523694	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000510292	ENST00000282470		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000510292	ENST00000418378		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000510292	ENST00000503414		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PPP3CA	chr4	102267896	-	SPARCL1	chr4	88420737	-
5CDS-3UTR	ENST00000263765	ENST00000533208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000263765	ENST00000263776		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000263765	ENST00000432284		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000530656	ENST00000533208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000530656	ENST00000263776		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000530656	ENST00000432284		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000424263	ENST00000533208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000424263	ENST00000263776		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-3UTR	ENST00000424263	ENST00000432284		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
3UTR-3UTR	ENST00000528980	ENST00000533208		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
3UTR-3UTR	ENST00000528980	ENST00000263776		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
3UTR-3UTR	ENST00000528980	ENST00000432284		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	PRDM11	chr11	45204674	+	ACCS	chr11	44089178	+
5CDS-5UTR	ENST00000300835	ENST00000380898		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000300835	ENST00000447459		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000300835	ENST00000395724		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000300835	ENST00000380897		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000300835	ENST00000569166		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000542965	ENST00000380898		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000542965	ENST00000447459		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000542965	ENST00000395724		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000542965	ENST00000380897		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000542965	ENST00000569166		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
3UTR-5UTR	ENST00000571654	ENST00000380898		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
3UTR-5UTR	ENST00000571654	ENST00000447459		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
3UTR-5UTR	ENST00000571654	ENST00000395724		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
3UTR-intron	ENST00000571654	ENST00000380897		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
3UTR-intron	ENST00000571654	ENST00000569166		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PRR14	chr16	30666914	+	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000356126	ENST00000055682		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PSMD12	chr17	65362528	-	KIAA2022	chrX	73965532	-
5CDS-5UTR	ENST00000357146	ENST00000055682		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PSMD12	chr17	65362528	-	KIAA2022	chrX	73965532	-
5UTR-5UTR	ENST00000581618	ENST00000055682		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	PSMD12	chr17	65362528	-	KIAA2022	chrX	73965532	-
In-frame	ENST00000380393	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000380393	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000216877	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000216877	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000358719	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000358719	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000399903	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000399903	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000425918	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000425918	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000318266	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000318266	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000356147	ENST00000262384		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
5CDS-intron	ENST00000356147	ENST00000565423		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	PTPRA	chr20	2998559	+	N4BP1	chr16	48596355	-
In-frame	ENST00000393386	ENST00000355621		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	PTPRZ1	chr7	121668697	+	UBE2H	chr7	129479175	-
In-frame	ENST00000393386	ENST00000473814		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	PTPRZ1	chr7	121668697	+	UBE2H	chr7	129479175	-
In-frame	ENST00000449182	ENST00000355621		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	PTPRZ1	chr7	121668697	+	UBE2H	chr7	129479175	-
In-frame	ENST00000449182	ENST00000473814		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	PTPRZ1	chr7	121668697	+	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000483028	ENST00000355621		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	PTPRZ1	chr7	121668697	+	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000483028	ENST00000473814		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	PTPRZ1	chr7	121668697	+	UBE2H	chr7	129479175	-
5CDS-5UTR	ENST00000333942	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000333942	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000333942	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000333942	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000333942	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000333942	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000358365	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000358365	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000358365	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000358365	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000358365	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000358365	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000583994	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000583994	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000583994	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000583994	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000583994	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-intron	ENST00000583994	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000545287	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000545287	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000545287	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000545287	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000545287	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000545287	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000354266	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000354266	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000354266	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000354266	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000354266	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5UTR-intron	ENST00000354266	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000394692	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000394692	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000394692	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000394692	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000394692	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000394692	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000581094	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000581094	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000581094	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000581094	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000581094	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-intron	ENST00000581094	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000580976	ENST00000570565		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000580976	ENST00000442502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000580976	ENST00000340813		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000580976	ENST00000451037		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
3UTR-5UTR	ENST00000580976	ENST00000285273		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
3UTR-intron	ENST00000580976	ENST00000571918		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000508628	ENST00000306376		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000508628	ENST00000434744		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000508628	ENST00000537818		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-intron	ENST00000508628	ENST00000480706		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000456466	ENST00000306376		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000456466	ENST00000434744		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000456466	ENST00000537818		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-intron	ENST00000456466	ENST00000480706		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000582970	ENST00000306376		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000582970	ENST00000434744		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000582970	ENST00000537818		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-intron	ENST00000582970	ENST00000480706		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000319921	ENST00000306376		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000319921	ENST00000434744		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000319921	ENST00000537818		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-intron	ENST00000319921	ENST00000480706		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000336301	ENST00000306376		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000336301	ENST00000434744		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000336301	ENST00000537818		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-intron	ENST00000336301	ENST00000480706		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000427003	ENST00000306376		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000427003	ENST00000434744		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-5UTR	ENST00000427003	ENST00000537818		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
intron-intron	ENST00000427003	ENST00000480706		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000369485	ENST00000257749		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000369485	ENST00000537989		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000369485	ENST00000343122		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-intron	ENST00000369485	ENST00000470301		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000265607	ENST00000257749		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000265607	ENST00000537989		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000265607	ENST00000343122		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-intron	ENST00000265607	ENST00000470301		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
intron-5UTR	ENST00000538899	ENST00000257749		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
intron-5UTR	ENST00000538899	ENST00000537989		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
intron-5UTR	ENST00000538899	ENST00000343122		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
intron-intron	ENST00000538899	ENST00000470301		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000369475	ENST00000257749		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000369475	ENST00000537989		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000369475	ENST00000343122		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-intron	ENST00000369475	ENST00000470301		TCGA	RV	BRCA	TCGA-A2-A04T-01A	RNGTT	chr6	89650790	-	BACH2	chr6	90718575	-
5CDS-intron	ENST00000355875	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000355875	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000355875	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000355875	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366541	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366541	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366541	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366541	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000343783	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000343783	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000343783	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000343783	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000391846	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000391846	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000391846	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000391846	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000496361	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000496361	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000496361	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
intron-intron	ENST00000496361	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SDCCAG8	chr1	243581378	+	C1orf101	chr1	244715624	+
5UTR-3CDS	ENST00000343348	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
5UTR-3CDS	ENST00000343348	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
5UTR-3CDS	ENST00000343348	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
5UTR-3CDS	ENST00000257414	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
5UTR-3CDS	ENST00000257414	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
5UTR-3CDS	ENST00000257414	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000510263	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000510263	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000510263	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000513137	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000513137	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000513137	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000282394	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000282394	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000282394	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000503865	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000503865	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000503865	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000503962	ENST00000304058		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000503962	ENST00000510708		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
intron-3CDS	ENST00000503962	ENST00000515439		TCGA	RV	BRCA	TCGA-BH-A0HI-01A	SEMA6A	chr5	115909881	-	DTWD2	chr5	118280344	-
In-frame	ENST00000394095	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394095	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394095	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394091	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394091	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394091	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394094	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394094	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394094	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
Frame-shit	ENST00000358203	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
Frame-shit	ENST00000358203	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
Frame-shit	ENST00000358203	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000314261	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000314261	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000314261	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000348610	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000348610	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000348610	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394085	ENST00000433496		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394085	ENST00000392481		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000394085	ENST00000296273		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP7	chr3	101046510	-	RFC4	chr3	186515403	-
In-frame	ENST00000271640	ENST00000389757		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000271640	ENST00000389759		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
5CDS-intron	ENST00000271640	ENST00000495123		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000368962	ENST00000389757		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000368962	ENST00000389759		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
5CDS-intron	ENST00000368962	ENST00000495123		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000368969	ENST00000389757		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000368969	ENST00000389759		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
5CDS-intron	ENST00000368969	ENST00000495123		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000368963	ENST00000389757		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
In-frame	ENST00000368963	ENST00000389759		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
5CDS-intron	ENST00000368963	ENST00000495123		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
intron-3CDS	ENST00000459773	ENST00000389757		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
intron-3CDS	ENST00000459773	ENST00000389759		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
intron-intron	ENST00000459773	ENST00000495123		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	SETDB1	chr1	150915164	+	PKP4	chr2	159477502	+
Frame-shit	ENST00000449833	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449833	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449833	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449833	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449833	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
Frame-shit	ENST00000409161	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409161	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409161	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409161	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409161	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
Frame-shit	ENST00000423696	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000423696	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000423696	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000423696	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000423696	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
Frame-shit	ENST00000338508	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000338508	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000338508	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000338508	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000338508	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
Frame-shit	ENST00000409530	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409530	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409530	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409530	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000409530	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
Frame-shit	ENST00000449116	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449116	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449116	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449116	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000449116	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
Frame-shit	ENST00000357171	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000357171	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000357171	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000357171	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
5CDS-5UTR	ENST00000357171	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
intron-3CDS	ENST00000468619	ENST00000524381		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
intron-5UTR	ENST00000468619	ENST00000529038		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
intron-5UTR	ENST00000468619	ENST00000331898		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
intron-5UTR	ENST00000468619	ENST00000374778		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
intron-5UTR	ENST00000468619	ENST00000541867		TCGA	RV	BRCA	TCGA-E2-A14N-01A	SHANK2	chr11	70505933	-	OPCML	chr11	132399080	-
intron-3UTR	ENST00000449833	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000449833	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000449833	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000449833	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000449833	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000449833	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000409161	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000409161	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000409161	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000409161	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000409161	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000409161	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-3UTR	ENST00000423696	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-3UTR	ENST00000423696	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-3UTR	ENST00000423696	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-intron	ENST00000423696	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-intron	ENST00000423696	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-intron	ENST00000423696	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-3UTR	ENST00000338508	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-3UTR	ENST00000338508	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-3UTR	ENST00000338508	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-intron	ENST00000338508	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-intron	ENST00000338508	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-intron	ENST00000338508	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000409530	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000409530	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000409530	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000409530	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000409530	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000409530	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000449116	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000449116	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000449116	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000449116	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000449116	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000449116	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000357171	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000357171	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-3UTR	ENST00000357171	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000357171	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000357171	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
intron-intron	ENST00000357171	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5UTR-3UTR	ENST00000468619	ENST00000525754		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5UTR-3UTR	ENST00000468619	ENST00000310046		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5UTR-3UTR	ENST00000468619	ENST00000531969		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5UTR-intron	ENST00000468619	ENST00000529195		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5UTR-intron	ENST00000468619	ENST00000524637		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5UTR-intron	ENST00000468619	ENST00000531036		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70544793	-	RBM4B	chr11	66433049	-
5CDS-5UTR	ENST00000414786	ENST00000359337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-5UTR	ENST00000414786	ENST00000449103		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-intron	ENST00000414786	ENST00000496720		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-5UTR	ENST00000445220	ENST00000359337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-5UTR	ENST00000445220	ENST00000449103		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-intron	ENST00000445220	ENST00000496720		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-5UTR	ENST00000262795	ENST00000359337		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-5UTR	ENST00000262795	ENST00000449103		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
5CDS-intron	ENST00000262795	ENST00000496720		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50729026	-
Frame-shit	ENST00000377707	ENST00000442003		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000538197		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000541112		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000507071		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000345451		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000259997		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000382401		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377707	ENST00000382395		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000442003		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000538197		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000541112		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000507071		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000345451		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000259997		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000382401		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000377700	ENST00000382395		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	SHB	chr9	38067926	-	CPEB2	chr4	15060045	+
Frame-shit	ENST00000225519	ENST00000397035		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
Frame-shit	ENST00000225519	ENST00000397041		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
Frame-shit	ENST00000225519	ENST00000309890		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000225519	ENST00000397039		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000225519	ENST00000359983		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000225519	ENST00000352011		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000225519	ENST00000397043		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-3CDS	ENST00000572705	ENST00000397035		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-3CDS	ENST00000572705	ENST00000397041		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-3CDS	ENST00000572705	ENST00000309890		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000572705	ENST00000397039		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000572705	ENST00000359983		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000572705	ENST00000352011		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000572705	ENST00000397043		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	SHPK	chr17	3527342	-	ATP2A3	chr17	3857004	-
5UTR-3CDS	ENST00000394947	ENST00000308508		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	SIN3A	chr15	75743764	-	CSPG4	chr15	75985574	-
intron-3CDS	ENST00000360439	ENST00000308508		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	SIN3A	chr15	75743764	-	CSPG4	chr15	75985574	-
intron-3CDS	ENST00000394949	ENST00000308508		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	SIN3A	chr15	75743764	-	CSPG4	chr15	75985574	-
5UTR-3CDS	ENST00000567289	ENST00000308508		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	SIN3A	chr15	75743764	-	CSPG4	chr15	75985574	-
intron-3CDS	ENST00000381232	ENST00000356175		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000381232	ENST00000358273		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000381232	ENST00000431387		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3UTR	ENST00000381232	ENST00000581113		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000381232	ENST00000417592		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000381232	ENST00000444181		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000555818	ENST00000356175		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000555818	ENST00000358273		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000555818	ENST00000431387		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3UTR	ENST00000555818	ENST00000581113		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000555818	ENST00000417592		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000555818	ENST00000444181		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000358550	ENST00000356175		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000358550	ENST00000358273		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000358550	ENST00000431387		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3UTR	ENST00000358550	ENST00000581113		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000358550	ENST00000417592		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000358550	ENST00000444181		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000537413	ENST00000356175		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000537413	ENST00000358273		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000537413	ENST00000431387		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3UTR	ENST00000537413	ENST00000581113		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000537413	ENST00000417592		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000537413	ENST00000444181		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000554874	ENST00000356175		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3CDS	ENST00000554874	ENST00000358273		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000554874	ENST00000431387		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-3UTR	ENST00000554874	ENST00000581113		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000554874	ENST00000417592		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
intron-intron	ENST00000554874	ENST00000444181		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SIPA1L1	chr14	71979562	+	NF1	chr17	29652838	+
Frame-shit	ENST00000265631	ENST00000355870		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000265631	ENST00000433467		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000265631	ENST00000354639		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000265631	ENST00000428484		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
5CDS-3UTR	ENST00000265631	ENST00000405627		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000416240	ENST00000355870		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000416240	ENST00000433467		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000416240	ENST00000354639		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000416240	ENST00000428484		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
5CDS-3UTR	ENST00000416240	ENST00000405627		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000542654	ENST00000355870		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000542654	ENST00000433467		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000542654	ENST00000354639		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000542654	ENST00000428484		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
5CDS-3UTR	ENST00000542654	ENST00000405627		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
intron-3CDS	ENST00000494085	ENST00000355870		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
intron-3CDS	ENST00000494085	ENST00000433467		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
intron-3CDS	ENST00000494085	ENST00000354639		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
intron-3CDS	ENST00000494085	ENST00000428484		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
intron-3UTR	ENST00000494085	ENST00000405627		TCGA	RV	BRCA	TCGA-A8-A08R-01A	SLC25A13	chr7	95906508	-	STK31	chr7	23792336	+
Frame-shit	ENST00000301335	ENST00000348987		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000301335	ENST00000263071		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000301335	ENST00000571272		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
5CDS-intron	ENST00000301335	ENST00000574545		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
In-frame	ENST00000571650	ENST00000348987		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
In-frame	ENST00000571650	ENST00000263071		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000571650	ENST00000571272		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
5CDS-intron	ENST00000571650	ENST00000574545		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000382147	ENST00000348987		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000382147	ENST00000263071		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000382147	ENST00000571272		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
5CDS-intron	ENST00000382147	ENST00000574545		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000412517	ENST00000348987		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000412517	ENST00000263071		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
Frame-shit	ENST00000412517	ENST00000571272		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
5CDS-intron	ENST00000412517	ENST00000574545		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
intron-3CDS	ENST00000574274	ENST00000348987		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
intron-3CDS	ENST00000574274	ENST00000263071		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
intron-3CDS	ENST00000574274	ENST00000571272		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
intron-intron	ENST00000574274	ENST00000574545		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	SLC43A2	chr17	1486498	-	SCARF1	chr17	1538911	-
5CDS-intron	ENST00000286398	ENST00000396392		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000286398	ENST00000396396		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000286398	ENST00000604870		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000374793	ENST00000396392		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000374793	ENST00000396396		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000374793	ENST00000604870		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000303219	ENST00000396392		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000303219	ENST00000396396		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000303219	ENST00000604870		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000374787	ENST00000396392		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000374787	ENST00000396396		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-intron	ENST00000374787	ENST00000604870		TCGA	RV	BRCA	TCGA-AO-A129-01A	SMC2	chr9	106892126	+	PGM5	chr9	71114143	+
5CDS-5UTR	ENST00000260197	ENST00000264018		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
5CDS-5UTR	ENST00000260197	ENST00000534980		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
5CDS-5UTR	ENST00000260197	ENST00000526070		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
3UTR-5UTR	ENST00000532451	ENST00000264018		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
3UTR-5UTR	ENST00000532451	ENST00000534980		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
3UTR-5UTR	ENST00000532451	ENST00000526070		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000525532	ENST00000264018		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000525532	ENST00000534980		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000525532	ENST00000526070		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000532694	ENST00000264018		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000532694	ENST00000534980		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000532694	ENST00000526070		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000534286	ENST00000264018		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000534286	ENST00000534980		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000534286	ENST00000526070		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000527934	ENST00000264018		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000527934	ENST00000534980		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
intron-5UTR	ENST00000527934	ENST00000526070		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SORL1	chr11	121403261	+	DDX6	chr11	118657227	-
5UTR-intron	ENST00000393328	ENST00000269586		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000393328	ENST00000444555		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000393328	ENST00000583123		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-intron	ENST00000393331	ENST00000269586		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000393331	ENST00000444555		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000393331	ENST00000583123		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-intron	ENST00000347630	ENST00000269586		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000347630	ENST00000444555		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000347630	ENST00000583123		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-intron	ENST00000504102	ENST00000269586		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000504102	ENST00000444555		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000504102	ENST00000583123		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
intron-intron	ENST00000503676	ENST00000269586		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
intron-5UTR	ENST00000503676	ENST00000444555		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
intron-5UTR	ENST00000503676	ENST00000583123		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-intron	ENST00000513080	ENST00000269586		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000513080	ENST00000444555		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5UTR-5UTR	ENST00000513080	ENST00000583123		TCGA	RV	BRCA	TCGA-E2-A3DX-01A	SPOP	chr17	47755295	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000263736	ENST00000272203		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000263736	ENST00000414478		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000263736	ENST00000485632		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000535761	ENST00000272203		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000535761	ENST00000414478		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000535761	ENST00000485632		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000490133	ENST00000272203		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000490133	ENST00000414478		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
intron-intron	ENST00000490133	ENST00000485632		TCGA	RV	BRCA	TCGA-BH-A209-01A	SRBD1	chr2	45780762	-	PLEKHA6	chr1	204243937	-
Frame-shit	ENST00000308127	ENST00000398645		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
Frame-shit	ENST00000308127	ENST00000529006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000308127	ENST00000526258		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000308127	ENST00000308783		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000308127	ENST00000530342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
intron-3CDS	ENST00000308298	ENST00000398645		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
intron-3CDS	ENST00000308298	ENST00000529006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
intron-intron	ENST00000308298	ENST00000526258		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
intron-intron	ENST00000308298	ENST00000308783		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
intron-intron	ENST00000308298	ENST00000530342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
Frame-shit	ENST00000376757	ENST00000398645		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
Frame-shit	ENST00000376757	ENST00000529006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000376757	ENST00000526258		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000376757	ENST00000308783		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000376757	ENST00000530342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
3UTR-3CDS	ENST00000532181	ENST00000398645		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
3UTR-3CDS	ENST00000532181	ENST00000529006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
3UTR-intron	ENST00000532181	ENST00000526258		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
3UTR-intron	ENST00000532181	ENST00000308783		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
3UTR-intron	ENST00000532181	ENST00000530342		TCGA	RV	BRCA	TCGA-A7-A13D-01B	SSH3	chr11	67075929	+	KDM2A	chr11	66985202	+
5CDS-intron	ENST00000399640	ENST00000322349		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000399640	ENST00000547833		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000319914	ENST00000322349		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000319914	ENST00000547833		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000521180	ENST00000322349		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000521180	ENST00000547833		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
intron-intron	ENST00000522652	ENST00000322349		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
intron-intron	ENST00000522652	ENST00000547833		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
intron-intron	ENST00000519435	ENST00000322349		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
intron-intron	ENST00000519435	ENST00000547833		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ST3GAL1	chr8	134467091	-	EEA1	chr12	93229203	-
5UTR-intron	ENST00000487143	ENST00000485270		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	STK39	chr2	168931492	-	MAT1A	chr10	82045345	-
5UTR-intron	ENST00000487143	ENST00000372213		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	STK39	chr2	168931492	-	MAT1A	chr10	82045345	-
5CDS-intron	ENST00000355999	ENST00000485270		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	STK39	chr2	168931492	-	MAT1A	chr10	82045345	-
5CDS-intron	ENST00000355999	ENST00000372213		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	STK39	chr2	168931492	-	MAT1A	chr10	82045345	-
5CDS-5UTR	ENST00000337137	ENST00000406902		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000337137	ENST00000361034		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000337137	ENST00000490378		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000337137	ENST00000408031		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000380995	ENST00000406902		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000380995	ENST00000361034		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000380995	ENST00000490378		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000380995	ENST00000408031		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-5UTR	ENST00000407381	ENST00000406902		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000407381	ENST00000361034		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000407381	ENST00000490378		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000407381	ENST00000408031		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-5UTR	ENST00000355704	ENST00000406902		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000355704	ENST00000361034		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000355704	ENST00000490378		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000355704	ENST00000408031		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-5UTR	ENST00000472791	ENST00000406902		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000472791	ENST00000361034		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000472791	ENST00000490378		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000472791	ENST00000408031		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000406733	ENST00000406902		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000406733	ENST00000361034		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000406733	ENST00000490378		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000406733	ENST00000408031		TCGA	RV	BRCA	TCGA-AR-A24H-01A	TBC1D22A	chr22	47193517	+	GRAMD4	chr22	47022648	+
Frame-shit	ENST00000258991	ENST00000269346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
Frame-shit	ENST00000258991	ENST00000529107		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5CDS-3UTR	ENST00000258991	ENST00000534346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5CDS-intron	ENST00000258991	ENST00000441391		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
Frame-shit	ENST00000583097	ENST00000269346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
Frame-shit	ENST00000583097	ENST00000529107		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5CDS-3UTR	ENST00000583097	ENST00000534346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5CDS-intron	ENST00000583097	ENST00000441391		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
Frame-shit	ENST00000584379	ENST00000269346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
Frame-shit	ENST00000584379	ENST00000529107		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5CDS-3UTR	ENST00000584379	ENST00000534346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5CDS-intron	ENST00000584379	ENST00000441391		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
intron-3CDS	ENST00000581812	ENST00000269346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
intron-3CDS	ENST00000581812	ENST00000529107		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
intron-3UTR	ENST00000581812	ENST00000534346		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
intron-intron	ENST00000581812	ENST00000441391		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TEX2	chr17	62270919	-	TTYH2	chr17	72239513	+
5UTR-3CDS	ENST00000355327	ENST00000544974		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3CDS	ENST00000355327	ENST00000560369		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3CDS	ENST00000355327	ENST00000260382		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3CDS	ENST00000355327	ENST00000443425		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3CDS	ENST00000355327	ENST00000560691		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3UTR	ENST00000355327	ENST00000436542		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3UTR	ENST00000355327	ENST00000560158		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000261862	ENST00000544974		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000261862	ENST00000560369		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000261862	ENST00000260382		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000261862	ENST00000443425		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000261862	ENST00000560691		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000261862	ENST00000436542		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000261862	ENST00000560158		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000544974		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000560369		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000260382		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000443425		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000560691		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000357769	ENST00000436542		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000357769	ENST00000560158		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000544974		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000560369		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000260382		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000443425		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000560691		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000567838	ENST00000436542		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000567838	ENST00000560158		TCGA	RV	BRCA	TCGA-BH-A0DK-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71329518	+
5UTR-3CDS	ENST00000590602	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000590602	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000590602	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000590602	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000590602	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000590602	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000322933	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000322933	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000322933	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000322933	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000322933	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000322933	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000592076	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000592076	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000392467	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000392467	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000322914	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000322914	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000306591	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000306591	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000306591	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000306591	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000306591	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000306591	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000591436	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000591436	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000589553	ENST00000403627		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-3CDS	ENST00000589553	ENST00000405159		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000589553	ENST00000583178		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000589553	ENST00000580032		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000589553	ENST00000581110		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
5UTR-5UTR	ENST00000589553	ENST00000583024		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124693	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000519519	ENST00000417640		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000519519	ENST00000521954		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000519519	ENST00000522820		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000519519	ENST00000521366		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
In-frame	ENST00000418210	ENST00000417640		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
5CDS-3UTR	ENST00000418210	ENST00000521954		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000418210	ENST00000522820		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000418210	ENST00000521366		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
In-frame	ENST00000458549	ENST00000417640		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
5CDS-3UTR	ENST00000458549	ENST00000521954		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000458549	ENST00000522820		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000458549	ENST00000521366		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000523902	ENST00000417640		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000523902	ENST00000521954		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000523902	ENST00000522820		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000523902	ENST00000521366		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	TMEM64	chr8	91657339	-	NECAB1	chr8	91813919	+
Frame-shit	ENST00000376234	ENST00000376131		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000376234	ENST00000376143		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
In-frame	ENST00000376234	ENST00000468052		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000342624	ENST00000376131		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000342624	ENST00000376143		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000342624	ENST00000468052		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000328767	ENST00000376131		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000328767	ENST00000376143		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
In-frame	ENST00000328767	ENST00000468052		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
intron-3CDS	ENST00000462211	ENST00000376131		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
intron-3CDS	ENST00000462211	ENST00000376143		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
intron-3CDS	ENST00000462211	ENST00000468052		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TMTC4	chr13	101277789	-	FGF14	chr13	102527646	-
Frame-shit	ENST00000358465	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
Frame-shit	ENST00000358465	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
5CDS-intron	ENST00000358465	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
Frame-shit	ENST00000369543	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
Frame-shit	ENST00000369543	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
5CDS-intron	ENST00000369543	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
5UTR-3CDS	ENST00000450349	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
5UTR-3CDS	ENST00000450349	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
5UTR-intron	ENST00000450349	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
intron-3CDS	ENST00000476908	ENST00000436319		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
intron-3CDS	ENST00000476908	ENST00000370571		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
intron-intron	ENST00000476908	ENST00000485434		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	TRIM33	chr1	115005726	-	COL24A1	chr1	86334309	-
Frame-shit	ENST00000267622	ENST00000261835		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92465584	-	CYP46A1	chr14	100165803	+
5CDS-5UTR	ENST00000267622	ENST00000423126		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92465584	-	CYP46A1	chr14	100165803	+
5CDS-intron	ENST00000267622	ENST00000554176		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92465584	-	CYP46A1	chr14	100165803	+
intron-3CDS	ENST00000555105	ENST00000261835		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92465584	-	CYP46A1	chr14	100165803	+
intron-5UTR	ENST00000555105	ENST00000423126		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92465584	-	CYP46A1	chr14	100165803	+
intron-intron	ENST00000555105	ENST00000554176		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92465584	-	CYP46A1	chr14	100165803	+
Frame-shit	ENST00000334379	ENST00000521654		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
Frame-shit	ENST00000334379	ENST00000560949		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000334379	ENST00000454842		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000334379	ENST00000368414		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000334379	ENST00000359704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000334379	ENST00000275184		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
Frame-shit	ENST00000368332	ENST00000521654		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
Frame-shit	ENST00000368332	ENST00000560949		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000368332	ENST00000454842		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000368332	ENST00000368414		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000368332	ENST00000359704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000368332	ENST00000275184		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-3CDS	ENST00000450358	ENST00000521654		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-3CDS	ENST00000450358	ENST00000560949		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-intron	ENST00000450358	ENST00000454842		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-5UTR	ENST00000450358	ENST00000368414		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-5UTR	ENST00000450358	ENST00000359704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-5UTR	ENST00000450358	ENST00000275184		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-3CDS	ENST00000489934	ENST00000521654		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-3CDS	ENST00000489934	ENST00000560949		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-intron	ENST00000489934	ENST00000454842		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-5UTR	ENST00000489934	ENST00000368414		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-5UTR	ENST00000489934	ENST00000359704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
intron-5UTR	ENST00000489934	ENST00000275184		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRMT11	chr6	126334247	+	RNF217	chr6	125397803	+
Frame-shit	ENST00000373830	ENST00000373839		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	TRNAU1AP	chr1	28880249	+	PHACTR4	chr1	28800066	+
5CDS-3UTR	ENST00000373830	ENST00000493669		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	TRNAU1AP	chr1	28880249	+	PHACTR4	chr1	28800066	+
5CDS-3UTR	ENST00000373830	ENST00000373836		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	TRNAU1AP	chr1	28880249	+	PHACTR4	chr1	28800066	+
3UTR-3CDS	ENST00000495995	ENST00000373839		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	TRNAU1AP	chr1	28880249	+	PHACTR4	chr1	28800066	+
3UTR-3UTR	ENST00000495995	ENST00000493669		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	TRNAU1AP	chr1	28880249	+	PHACTR4	chr1	28800066	+
3UTR-3UTR	ENST00000495995	ENST00000373836		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	TRNAU1AP	chr1	28880249	+	PHACTR4	chr1	28800066	+
intron-3CDS	ENST00000570081	ENST00000260403		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
intron-3UTR	ENST00000570081	ENST00000569369		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
Frame-shit	ENST00000260383	ENST00000260403		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
5CDS-3UTR	ENST00000260383	ENST00000569369		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
Frame-shit	ENST00000564079	ENST00000260403		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
5CDS-3UTR	ENST00000564079	ENST00000569369		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
Frame-shit	ENST00000399460	ENST00000260403		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
5CDS-3UTR	ENST00000399460	ENST00000569369		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TUBGCP4	chr15	43678528	+	TMEM62	chr15	43470805	+
In-frame	ENST00000261427	ENST00000340169		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000261427	ENST00000261434		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000261427	ENST00000513731		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000261427	ENST00000381846		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
5CDS-3UTR	ENST00000261427	ENST00000515061		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000295963	ENST00000340169		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000295963	ENST00000261434		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000295963	ENST00000513731		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000295963	ENST00000381846		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
5CDS-3UTR	ENST00000295963	ENST00000515061		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
intron-3CDS	ENST00000438068	ENST00000340169		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
intron-3CDS	ENST00000438068	ENST00000261434		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
intron-3CDS	ENST00000438068	ENST00000513731		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
intron-3CDS	ENST00000438068	ENST00000381846		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
intron-3UTR	ENST00000438068	ENST00000515061		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000503368	ENST00000340169		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000503368	ENST00000261434		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000503368	ENST00000513731		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000503368	ENST00000381846		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
5CDS-3UTR	ENST00000503368	ENST00000515061		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000445950	ENST00000340169		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000445950	ENST00000261434		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000445950	ENST00000513731		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000445950	ENST00000381846		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
5CDS-3UTR	ENST00000445950	ENST00000515061		TCGA	RV	BRCA	TCGA-UU-A93S-01A	UBE2K	chr4	39700010	+	LIAS	chr4	39462410	+
In-frame	ENST00000377227	ENST00000566983		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
Frame-shit	ENST00000377227	ENST00000268261		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377227	ENST00000539622		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377227	ENST00000537352		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377227	ENST00000569958		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5CDS-intron	ENST00000377227	ENST00000565837		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377219	ENST00000566983		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
Frame-shit	ENST00000377219	ENST00000268261		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377219	ENST00000539622		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377219	ENST00000537352		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000377219	ENST00000569958		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5CDS-intron	ENST00000377219	ENST00000565837		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000506128	ENST00000566983		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
Frame-shit	ENST00000506128	ENST00000268261		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000506128	ENST00000539622		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000506128	ENST00000537352		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000506128	ENST00000569958		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5CDS-intron	ENST00000506128	ENST00000565837		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000511320	ENST00000566983		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
Frame-shit	ENST00000511320	ENST00000268261		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000511320	ENST00000539622		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000511320	ENST00000537352		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000511320	ENST00000569958		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5CDS-intron	ENST00000511320	ENST00000565837		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5UTR-3CDS	ENST00000503273	ENST00000566983		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5UTR-3CDS	ENST00000503273	ENST00000268261		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5UTR-3CDS	ENST00000503273	ENST00000539622		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5UTR-3CDS	ENST00000503273	ENST00000537352		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5UTR-3CDS	ENST00000503273	ENST00000569958		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
5UTR-intron	ENST00000503273	ENST00000565837		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	UIMC1	chr5	176370336	-	PMM2	chr16	8941581	+
In-frame	ENST00000263966	ENST00000263967		TCGA	RV	BRCA	TCGA-E2-A14P-01A	USP13	chr3	179418917	+	PIK3CA	chr3	178941869	+
3UTR-3CDS	ENST00000482333	ENST00000263967		TCGA	RV	BRCA	TCGA-E2-A14P-01A	USP13	chr3	179418917	+	PIK3CA	chr3	178941869	+
In-frame	ENST00000496897	ENST00000263967		TCGA	RV	BRCA	TCGA-E2-A14P-01A	USP13	chr3	179418917	+	PIK3CA	chr3	178941869	+
Frame-shit	ENST00000437048	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000437048	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000437048	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
intron-3CDS	ENST00000574029	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
intron-3CDS	ENST00000574029	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
intron-3CDS	ENST00000574029	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
5UTR-3CDS	ENST00000576149	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
5UTR-3CDS	ENST00000576149	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
5UTR-3CDS	ENST00000576149	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
In-frame	ENST00000446250	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
In-frame	ENST00000446250	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
In-frame	ENST00000446250	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000291074	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000291074	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000291074	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000571805	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000571805	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000571805	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000401468	ENST00000532183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000401468	ENST00000245503		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000401468	ENST00000397183		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	VPS53	chr17	505035	-	MYH2	chr17	10444014	-
Frame-shit	ENST00000317025	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000317025	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000317025	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000433384	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000433384	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000527502	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000527502	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000316985	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000316985	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000525081	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000525081	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-3UTR	ENST00000580306	ENST00000539805		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000580306	ENST00000480436		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000580306	ENST00000337743		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000580306	ENST00000544472		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000322748	ENST00000539805		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000322748	ENST00000480436		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000322748	ENST00000337743		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000322748	ENST00000544472		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000454073	ENST00000539805		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000454073	ENST00000480436		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000454073	ENST00000337743		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000454073	ENST00000544472		TCGA	RV	BRCA	TCGA-A2-A0SU-01A	ZNF18	chr17	11887430	-	TASP1	chr20	13398168	-
Frame-shit	ENST00000594947	ENST00000261180		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZNF257	chr19	22235437	+	TRHDE	chr12	72863538	+
5CDS-intron	ENST00000594947	ENST00000549138		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZNF257	chr19	22235437	+	TRHDE	chr12	72863538	+
3UTR-3CDS	ENST00000596471	ENST00000261180		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZNF257	chr19	22235437	+	TRHDE	chr12	72863538	+
3UTR-intron	ENST00000596471	ENST00000549138		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZNF257	chr19	22235437	+	TRHDE	chr12	72863538	+
Frame-shit	ENST00000600162	ENST00000261180		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZNF257	chr19	22235437	+	TRHDE	chr12	72863538	+
5CDS-intron	ENST00000600162	ENST00000549138		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ZNF257	chr19	22235437	+	TRHDE	chr12	72863538	+
Frame-shit	ENST00000302538	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
5CDS-intron	ENST00000302538	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
Frame-shit	ENST00000544583	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
5CDS-intron	ENST00000544583	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
intron-3CDS	ENST00000572441	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
intron-intron	ENST00000572441	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
Frame-shit	ENST00000574437	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
5CDS-intron	ENST00000574437	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
Frame-shit	ENST00000291107	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
5CDS-intron	ENST00000291107	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
intron-3CDS	ENST00000543210	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
intron-intron	ENST00000543210	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
Frame-shit	ENST00000536794	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
5CDS-intron	ENST00000536794	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
intron-3CDS	ENST00000573895	ENST00000313486		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
intron-intron	ENST00000573895	ENST00000539476		TCGA	RV	BRCA	TCGA-BH-A0AV-01A	ABR	chr17	973209	-	PITPNA	chr17	1446321	-
Frame-shit	ENST00000338432	ENST00000242576		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000338432	ENST00000336865		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377854	ENST00000242576		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377854	ENST00000336865		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377848	ENST00000242576		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377848	ENST00000336865		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000242576		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000336865		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000242576		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000336865		TCGA	RV	BRCA	TCGA-AN-A0XP-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000336325	ENST00000216951		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
Frame-shit	ENST00000336325	ENST00000541098		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
In-frame	ENST00000336325	ENST00000451957		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
Frame-shit	ENST00000360596	ENST00000216951		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
Frame-shit	ENST00000360596	ENST00000541098		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
In-frame	ENST00000360596	ENST00000451957		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
Frame-shit	ENST00000253382	ENST00000216951		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
Frame-shit	ENST00000253382	ENST00000541098		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
In-frame	ENST00000253382	ENST00000451957		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
intron-3CDS	ENST00000476922	ENST00000216951		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
intron-3CDS	ENST00000476922	ENST00000541098		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
intron-3CDS	ENST00000476922	ENST00000451957		TCGA	RV	BRCA	TCGA-C8-A134-01A	ACSS2	chr20	33502240	+	GSS	chr20	33516754	-
In-frame	ENST00000358680	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5CDS-intron	ENST00000358680	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
In-frame	ENST00000294517	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5CDS-intron	ENST00000294517	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
In-frame	ENST00000398167	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5CDS-intron	ENST00000398167	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
In-frame	ENST00000373443	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5CDS-intron	ENST00000373443	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
3UTR-3CDS	ENST00000484656	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
3UTR-intron	ENST00000484656	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
In-frame	ENST00000373440	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5CDS-intron	ENST00000373440	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
In-frame	ENST00000373441	ENST00000275034		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5CDS-intron	ENST00000373441	ENST00000479165		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ADC	chr1	33563780	+	PHIP	chr6	79713575	-
5UTR-intron	ENST00000539907	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000539907	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000539907	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-5UTR	ENST00000539907	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000539907	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000539907	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000539907	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000540617	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000540617	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000540617	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-5UTR	ENST00000540617	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000540617	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000540617	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000540617	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000374840	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000374840	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000374840	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-5UTR	ENST00000374840	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000374840	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000374840	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
5UTR-intron	ENST00000374840	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-intron	ENST00000468526	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-intron	ENST00000468526	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-intron	ENST00000468526	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-5UTR	ENST00000468526	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-intron	ENST00000468526	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-intron	ENST00000468526	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
3UTR-intron	ENST00000468526	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374832	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374832	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374832	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-5UTR	ENST00000374832	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374832	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374832	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374832	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000425315	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000425315	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000425315	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-5UTR	ENST00000425315	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000425315	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000425315	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000425315	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374830	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374830	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374830	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-5UTR	ENST00000374830	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374830	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374830	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374830	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374829	ENST00000354552		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374829	ENST00000331335		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374829	ENST00000398326		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-5UTR	ENST00000374829	ENST00000476723		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374829	ENST00000487087		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374829	ENST00000471562		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
intron-intron	ENST00000374829	ENST00000383694		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	ALPL	chr1	21836010	+	FILIP1L	chr3	99549449	-
Frame-shit	ENST00000332826	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ANO9	chr11	428088	-	DEAF1	chr11	654051	-
Frame-shit	ENST00000332826	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ANO9	chr11	428088	-	DEAF1	chr11	654051	-
5CDS-5UTR	ENST00000332826	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ANO9	chr11	428088	-	DEAF1	chr11	654051	-
Frame-shit	ENST00000295974	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
In-frame	ENST00000295974	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000295974	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000513140	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
In-frame	ENST00000513140	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000513140	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000508593	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
In-frame	ENST00000508593	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000508593	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000506352	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
In-frame	ENST00000506352	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000506352	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
intron-3CDS	ENST00000511572	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
intron-3CDS	ENST00000511572	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
intron-intron	ENST00000511572	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000543538	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000543538	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000543538	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000502841	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000502841	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000502841	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000504305	ENST00000381782		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
Frame-shit	ENST00000504305	ENST00000316607		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
5CDS-intron	ENST00000504305	ENST00000463952		TCGA	RV	BRCA	TCGA-E9-A22E-01A	APBB2	chr4	40827904	-	NSUN7	chr4	40810324	+
In-frame	ENST00000263674	ENST00000263253		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARHGEF17	chr11	73022875	+	EP300	chr22	41545042	+
intron-3CDS	ENST00000536170	ENST00000263253		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARHGEF17	chr11	73022875	+	EP300	chr22	41545042	+
In-frame	ENST00000287394	ENST00000327896		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
In-frame	ENST00000287394	ENST00000417561		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
In-frame	ENST00000287394	ENST00000490605		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000287394	ENST00000393526		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000287394	ENST00000470789		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000521903	ENST00000327896		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000521903	ENST00000417561		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000521903	ENST00000490605		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000521903	ENST00000393526		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000521903	ENST00000470789		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
intron-3CDS	ENST00000534257	ENST00000327896		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
intron-3CDS	ENST00000534257	ENST00000417561		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
intron-3CDS	ENST00000534257	ENST00000490605		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
intron-intron	ENST00000534257	ENST00000393526		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
intron-intron	ENST00000534257	ENST00000470789		TCGA	RV	BRCA	TCGA-BH-A203-01A	ATAD2	chr8	124346118	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000370557	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
Frame-shit	ENST00000370557	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
5CDS-intron	ENST00000370557	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000327569	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000327569	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-intron	ENST00000327569	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000361648	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000361648	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-intron	ENST00000361648	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000460773	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000460773	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-intron	ENST00000460773	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000370543	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000370543	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-intron	ENST00000370543	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000359686	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-3CDS	ENST00000359686	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
intron-intron	ENST00000359686	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A1II-01A	ATP11C	chrX	139014175	-	PREX1	chr20	47309328	-
In-frame	ENST00000266383	ENST00000217159		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	B4GALNT3	chr12	666032	+	SLCO4A1	chr20	61290029	+
In-frame	ENST00000266383	ENST00000370507		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	B4GALNT3	chr12	666032	+	SLCO4A1	chr20	61290029	+
5CDS-intron	ENST00000266383	ENST00000470412		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	B4GALNT3	chr12	666032	+	SLCO4A1	chr20	61290029	+
intron-3CDS	ENST00000544638	ENST00000217159		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	B4GALNT3	chr12	666032	+	SLCO4A1	chr20	61290029	+
intron-3CDS	ENST00000544638	ENST00000370507		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	B4GALNT3	chr12	666032	+	SLCO4A1	chr20	61290029	+
intron-intron	ENST00000544638	ENST00000470412		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	B4GALNT3	chr12	666032	+	SLCO4A1	chr20	61290029	+
5CDS-intron	ENST00000589222	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000589222	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000589222	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-intron	ENST00000407086	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000407086	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000407086	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-intron	ENST00000390652	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000390652	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000390652	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-intron	ENST00000408905	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000408905	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000408905	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-intron	ENST00000588462	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000588462	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000588462	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-intron	ENST00000585744	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000585744	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000585744	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-intron	ENST00000588874	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000588874	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
5CDS-5UTR	ENST00000588874	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
intron-intron	ENST00000585812	ENST00000495684		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
intron-5UTR	ENST00000585812	ENST00000360254		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
intron-5UTR	ENST00000585812	ENST00000284476		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59067596	+	DISP1	chr1	223116149	+
In-frame	ENST00000224337	ENST00000355537		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000224337	ENST00000590564		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
In-frame	ENST00000371176	ENST00000355537		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000371176	ENST00000590564		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
In-frame	ENST00000427367	ENST00000355537		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000427367	ENST00000590564		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
In-frame	ENST00000413476	ENST00000355537		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000413476	ENST00000590564		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
In-frame	ENST00000495266	ENST00000355537		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000495266	ENST00000590564		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BLNK	chr10	98002491	-	ZNF536	chr19	31025754	+
In-frame	ENST00000344773	ENST00000371621		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000344773	ENST00000541713		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000379624	ENST00000371621		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000379624	ENST00000541713		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000342045	ENST00000371621		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000342045	ENST00000541713		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000379632	ENST00000371621		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000379632	ENST00000541713		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000361704	ENST00000371621		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
In-frame	ENST00000361704	ENST00000541713		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
3UTR-3CDS	ENST00000603461	ENST00000371621		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
3UTR-3CDS	ENST00000603461	ENST00000541713		TCGA	RV	BRCA	TCGA-E2-A15E-06A	BRE	chr2	28248287	+	PTPN1	chr20	49191054	+
5CDS-5UTR	ENST00000259008	ENST00000577830		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000259008	ENST00000407144		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000259008	ENST00000360238		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000259008	ENST00000577840		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000259008	ENST00000578357		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000577598	ENST00000577830		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000577598	ENST00000407144		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000577598	ENST00000360238		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000577598	ENST00000577840		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000577598	ENST00000578357		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5UTR-5UTR	ENST00000583837	ENST00000577830		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5UTR-intron	ENST00000583837	ENST00000407144		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5UTR-5UTR	ENST00000583837	ENST00000360238		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5UTR-intron	ENST00000583837	ENST00000577840		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
5UTR-intron	ENST00000583837	ENST00000578357		TCGA	RV	BRCA	TCGA-C8-A275-01A	BRIP1	chr17	59853762	-	CUEDC1	chr17	55963240	-
In-frame	ENST00000566621	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
In-frame	ENST00000566621	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
In-frame	ENST00000437989	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
In-frame	ENST00000437989	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
In-frame	ENST00000569302	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
In-frame	ENST00000569302	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000567389	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000567389	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000562877	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000562877	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000338183	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000338183	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000565792	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000565792	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000562489	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000562489	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000563167	ENST00000397609		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000563167	ENST00000491535		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	C15orf41	chr15	36872162	+	FAM98B	chr15	38756233	+
5CDS-intron	ENST00000566621	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000566621	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000566621	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000566621	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000566621	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000437989	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000437989	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000437989	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000437989	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000437989	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000569302	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000569302	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000569302	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000569302	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000569302	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000567389	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000567389	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000567389	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000567389	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000567389	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000562877	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000562877	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000562877	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000562877	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000562877	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000338183	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000338183	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000338183	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000338183	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000338183	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
3UTR-intron	ENST00000565792	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
3UTR-intron	ENST00000565792	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
3UTR-intron	ENST00000565792	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
3UTR-5UTR	ENST00000565792	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
3UTR-5UTR	ENST00000565792	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000562489	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000562489	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-intron	ENST00000562489	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000562489	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
5CDS-5UTR	ENST00000562489	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
intron-intron	ENST00000563167	ENST00000604213		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
intron-intron	ENST00000563167	ENST00000409796		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
intron-intron	ENST00000563167	ENST00000344791		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
intron-5UTR	ENST00000563167	ENST00000545021		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
intron-5UTR	ENST00000563167	ENST00000332728		TCGA	RV	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100269936	-
In-frame	ENST00000285381	ENST00000522677		TCGA	RV	BRCA	TCGA-AR-A256-01A	CA3	chr8	86356355	+	MYBL1	chr8	67479227	-
In-frame	ENST00000285381	ENST00000517885		TCGA	RV	BRCA	TCGA-AR-A256-01A	CA3	chr8	86356355	+	MYBL1	chr8	67479227	-
In-frame	ENST00000285381	ENST00000524176		TCGA	RV	BRCA	TCGA-AR-A256-01A	CA3	chr8	86356355	+	MYBL1	chr8	67479227	-
5CDS-intron	ENST00000285381	ENST00000522419		TCGA	RV	BRCA	TCGA-AR-A256-01A	CA3	chr8	86356355	+	MYBL1	chr8	67479227	-
intron-3CDS	ENST00000400473	ENST00000327155		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000400473	ENST00000399722		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000400473	ENST00000399725		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000400473	ENST00000360790		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-intron	ENST00000400473	ENST00000581687		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
Frame-shit	ENST00000256925	ENST00000327155		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
Frame-shit	ENST00000256925	ENST00000399722		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
Frame-shit	ENST00000256925	ENST00000399725		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
Frame-shit	ENST00000256925	ENST00000360790		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
5CDS-intron	ENST00000256925	ENST00000581687		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000585061	ENST00000327155		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000585061	ENST00000399722		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000585061	ENST00000399725		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000585061	ENST00000360790		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-intron	ENST00000585061	ENST00000581687		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000420687	ENST00000327155		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000420687	ENST00000399722		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000420687	ENST00000399725		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-3CDS	ENST00000420687	ENST00000360790		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
intron-intron	ENST00000420687	ENST00000581687		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20569184	+
5CDS-5UTR	ENST00000394303	ENST00000209728		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000394310	ENST00000209728		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000344140	ENST00000209728		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38445660	+
5UTR-5UTR	ENST00000582877	ENST00000209728		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38445660	+
5CDS-intron	ENST00000298892	ENST00000281471		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000298892	ENST00000537562		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000298892	ENST00000541931		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000298892	ENST00000536761		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000298892	ENST00000542781		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000298892	ENST00000541541		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000395805	ENST00000281471		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000395805	ENST00000537562		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000395805	ENST00000541931		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000395805	ENST00000536761		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000395805	ENST00000542781		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000395805	ENST00000541541		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000251071	ENST00000281471		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000251071	ENST00000537562		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000251071	ENST00000541931		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000251071	ENST00000536761		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000251071	ENST00000542781		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000251071	ENST00000541541		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000308433	ENST00000281471		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000308433	ENST00000537562		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000308433	ENST00000541931		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000308433	ENST00000536761		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000308433	ENST00000542781		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000308433	ENST00000541541		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000417045	ENST00000281471		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000417045	ENST00000537562		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000417045	ENST00000541931		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000417045	ENST00000536761		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-5UTR	ENST00000417045	ENST00000542781		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
5CDS-intron	ENST00000417045	ENST00000541541		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-intron	ENST00000538387	ENST00000281471		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-5UTR	ENST00000538387	ENST00000537562		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-intron	ENST00000538387	ENST00000541931		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-5UTR	ENST00000538387	ENST00000536761		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-5UTR	ENST00000538387	ENST00000542781		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-intron	ENST00000538387	ENST00000541541		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31867885	-
intron-3CDS	ENST00000256343	ENST00000545170		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000256343	ENST00000429774		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000256343	ENST00000393287		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000256343	ENST00000502250		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000256343	ENST00000503767		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000256343	ENST00000340660		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000256343	ENST00000532032		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000256343	ENST00000554491		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	CATSPERB	chr14	92246920	-	ATXN3	chr14	92563182	-
5UTR-5UTR	ENST00000301200	ENST00000585509		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
5UTR-5UTR	ENST00000301200	ENST00000589297		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
5UTR-5UTR	ENST00000301200	ENST00000591455		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
5UTR-5UTR	ENST00000301200	ENST00000446868		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
5UTR-5UTR	ENST00000301200	ENST00000361101		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
5UTR-5UTR	ENST00000301200	ENST00000589296		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
5UTR-intron	ENST00000301200	ENST00000586175		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000472703	ENST00000585509		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000472703	ENST00000589297		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000472703	ENST00000591455		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000472703	ENST00000446868		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000472703	ENST00000361101		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000472703	ENST00000589296		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-intron	ENST00000472703	ENST00000586175		TCGA	RV	BRCA	TCGA-AC-A5XU-01A	CDC42EP5	chr19	54982766	-	CYTH1	chr17	76705814	-
intron-3CDS	ENST00000398842	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398842	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398842	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000398842	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000398842	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398809	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398809	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398809	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000398809	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000398809	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000461841	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000461841	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000461841	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000461841	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000461841	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000299366	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000299366	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000299366	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000299366	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000299366	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
In-frame	ENST00000224721	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
In-frame	ENST00000224721	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
In-frame	ENST00000224721	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
5CDS-intron	ENST00000224721	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
5CDS-intron	ENST00000224721	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398788	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398788	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000398788	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000398788	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000398788	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000475158	ENST00000354179		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000475158	ENST00000439151		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-3CDS	ENST00000475158	ENST00000347982		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000475158	ENST00000361032		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
intron-intron	ENST00000475158	ENST00000511258		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CDH23	chr10	73501678	+	NSD1	chr5	176618885	+
In-frame	ENST00000360822	ENST00000373203		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000360822	ENST00000344849		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
5CDS-intron	ENST00000360822	ENST00000480266		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000359309	ENST00000373203		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000359309	ENST00000344849		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
5CDS-intron	ENST00000359309	ENST00000480266		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000349780	ENST00000373203		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000349780	ENST00000344849		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
5CDS-intron	ENST00000349780	ENST00000480266		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000360190	ENST00000373203		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
In-frame	ENST00000360190	ENST00000344849		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
5CDS-intron	ENST00000360190	ENST00000480266		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
intron-3CDS	ENST00000480467	ENST00000373203		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
intron-3CDS	ENST00000480467	ENST00000344849		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
intron-intron	ENST00000480467	ENST00000480266		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CDK5RAP2	chr9	123280705	-	ENG	chr9	130588951	-
intron-intron	ENST00000395290	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000395290	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000395290	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000358597	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000358597	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000358597	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000395292	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000395292	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000395292	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000310513	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000310513	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000310513	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000361904	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000361904	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000361904	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000539455	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000539455	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
intron-intron	ENST00000539455	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-intron	ENST00000531165	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-intron	ENST00000531165	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-intron	ENST00000531165	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-intron	ENST00000532048	ENST00000531187		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-intron	ENST00000532048	ENST00000336930		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-intron	ENST00000532048	ENST00000533227		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	CELF1	chr11	47521005	-	LUZP2	chr11	25071584	+
5CDS-5UTR	ENST00000262738	ENST00000338483		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
5CDS-intron	ENST00000262738	ENST00000538999		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
5CDS-5UTR	ENST00000262738	ENST00000538320		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
5CDS-5UTR	ENST00000262738	ENST00000426621		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
5CDS-5UTR	ENST00000262738	ENST00000407965		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000395964	ENST00000338483		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-intron	ENST00000395964	ENST00000538999		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000395964	ENST00000538320		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000395964	ENST00000426621		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000395964	ENST00000407965		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000497509	ENST00000338483		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-intron	ENST00000497509	ENST00000538999		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000497509	ENST00000538320		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000497509	ENST00000426621		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
intron-5UTR	ENST00000497509	ENST00000407965		TCGA	RV	BRCA	TCGA-A2-A25F-01A	CELSR1	chr22	46768780	-	MAFF	chr22	38609830	+
Frame-shit	ENST00000447540	ENST00000268704		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000447540	ENST00000341316		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
5CDS-intron	ENST00000447540	ENST00000565891		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000566029	ENST00000268704		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000566029	ENST00000341316		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
5CDS-intron	ENST00000566029	ENST00000565891		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000564845	ENST00000268704		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000564845	ENST00000341316		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
5CDS-intron	ENST00000564845	ENST00000565891		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000398510	ENST00000268704		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000398510	ENST00000341316		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
5CDS-intron	ENST00000398510	ENST00000565891		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
intron-3CDS	ENST00000564582	ENST00000268704		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
intron-3CDS	ENST00000564582	ENST00000341316		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
intron-intron	ENST00000564582	ENST00000565891		TCGA	RV	BRCA	TCGA-A8-A092-01A	CHD9	chr16	53191453	+	SPG7	chr16	89590414	+
Frame-shit	ENST00000409790	ENST00000396573		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
Frame-shit	ENST00000409790	ENST00000562109		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409790	ENST00000535259		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409790	ENST00000404927		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409790	ENST00000330684		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409790	ENST00000396575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409790	ENST00000566670		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
Frame-shit	ENST00000409552	ENST00000396573		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
Frame-shit	ENST00000409552	ENST00000562109		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409552	ENST00000535259		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409552	ENST00000404927		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409552	ENST00000330684		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409552	ENST00000396575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
5CDS-5UTR	ENST00000409552	ENST00000566670		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-3CDS	ENST00000465491	ENST00000396573		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-3CDS	ENST00000465491	ENST00000562109		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-5UTR	ENST00000465491	ENST00000535259		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-5UTR	ENST00000465491	ENST00000404927		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-5UTR	ENST00000465491	ENST00000330684		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-5UTR	ENST00000465491	ENST00000396575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
3UTR-5UTR	ENST00000465491	ENST00000566670		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000381822	ENST00000396573		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000381822	ENST00000562109		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000381822	ENST00000535259		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000381822	ENST00000404927		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000381822	ENST00000330684		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000381822	ENST00000396575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000381822	ENST00000566670		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	CLEC16A	chr16	11154879	+	GRIN2A	chr16	10032408	-
In-frame	ENST00000294053	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000294053	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000294053	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000294053	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000538039	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000538039	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000538039	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000538039	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000437826	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000437826	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000437826	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000437826	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000340729	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000340729	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000340729	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000340729	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000543042	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
In-frame	ENST00000543042	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000543042	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
5CDS-intron	ENST00000543042	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-3CDS	ENST00000445069	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-3CDS	ENST00000445069	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-intron	ENST00000445069	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-intron	ENST00000445069	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-3CDS	ENST00000538021	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-3CDS	ENST00000538021	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-intron	ENST00000538021	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-intron	ENST00000538021	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-3CDS	ENST00000542555	ENST00000334126		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-3CDS	ENST00000542555	ENST00000313663		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-intron	ENST00000542555	ENST00000542452		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
intron-intron	ENST00000542555	ENST00000539061		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	CLPB	chr11	72040751	-	C2CD3	chr11	73817538	-
Frame-shit	ENST00000458535	ENST00000312521		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	CMTM8	chr3	32280611	+	NR1D2	chr3	23996028	+
5CDS-3UTR	ENST00000458535	ENST00000492552		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	CMTM8	chr3	32280611	+	NR1D2	chr3	23996028	+
Frame-shit	ENST00000307526	ENST00000312521		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	CMTM8	chr3	32280611	+	NR1D2	chr3	23996028	+
5CDS-3UTR	ENST00000307526	ENST00000492552		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	CMTM8	chr3	32280611	+	NR1D2	chr3	23996028	+
5CDS-intron	ENST00000539941	ENST00000462175		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000539941	ENST00000395930		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000539941	ENST00000338696		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000268717	ENST00000462175		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000268717	ENST00000395930		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000268717	ENST00000338696		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
intron-intron	ENST00000439936	ENST00000462175		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
intron-intron	ENST00000439936	ENST00000395930		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
intron-intron	ENST00000439936	ENST00000338696		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	COPS3	chr17	17163615	-	TEKT3	chr17	15217547	-
Frame-shit	ENST00000443236	ENST00000253669		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
Frame-shit	ENST00000443236	ENST00000448593		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
Frame-shit	ENST00000443236	ENST00000593360		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
intron-3CDS	ENST00000597335	ENST00000253669		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
intron-3CDS	ENST00000597335	ENST00000448593		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
intron-3CDS	ENST00000597335	ENST00000593360		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
intron-3CDS	ENST00000388925	ENST00000253669		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
intron-3CDS	ENST00000388925	ENST00000448593		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
intron-3CDS	ENST00000388925	ENST00000593360		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CPAMD8	chr19	17085907	-	HAUS8	chr19	17160986	-
Frame-shit	ENST00000491148	ENST00000284727		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000491148	ENST00000409194		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000491148	ENST00000392541		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
Frame-shit	ENST00000282957	ENST00000284727		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000282957	ENST00000409194		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000282957	ENST00000392541		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
In-frame	ENST00000498639	ENST00000284727		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000498639	ENST00000409194		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000498639	ENST00000392541		TCGA	RV	BRCA	TCGA-LL-A5YM-01A	CPB1	chr3	148577974	+	ATP5G3	chr2	176049335	-
Frame-shit	ENST00000546373	ENST00000404771		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000372440		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000372443		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000286628		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000286627		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000354353		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000404857		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000546373	ENST00000406533		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000546373	ENST00000484507		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000546373	ENST00000481070		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000546373	ENST00000480683		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000404771		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000372440		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000372443		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000286628		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000286627		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000354353		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000404857		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000551568	ENST00000406533		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000551568	ENST00000484507		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000551568	ENST00000481070		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000551568	ENST00000480683		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000404771		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000372440		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000372443		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000286628		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000286627		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000354353		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000404857		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
Frame-shit	ENST00000338356	ENST00000406533		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000338356	ENST00000484507		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000338356	ENST00000481070		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000338356	ENST00000480683		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000404771		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000372440		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000372443		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000286628		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000286627		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000354353		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000404857		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-3CDS	ENST00000549691	ENST00000406533		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-intron	ENST00000549691	ENST00000484507		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-intron	ENST00000549691	ENST00000481070		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
intron-intron	ENST00000549691	ENST00000480683		TCGA	RV	BRCA	TCGA-E2-A10C-01A	CPM	chr12	69326458	-	KCNMA1	chr10	78669854	-
5CDS-intron	ENST00000349769	ENST00000540274		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
5CDS-intron	ENST00000349769	ENST00000377307		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
5CDS-intron	ENST00000349769	ENST00000276826		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
5CDS-5UTR	ENST00000349769	ENST00000528810		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
intron-intron	ENST00000531727	ENST00000540274		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
intron-intron	ENST00000531727	ENST00000377307		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
intron-intron	ENST00000531727	ENST00000276826		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
intron-5UTR	ENST00000531727	ENST00000528810		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145763197	-
5CDS-5UTR	ENST00000435070	ENST00000393249		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000435070	ENST00000261183		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000435070	ENST00000393250		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000435070	ENST00000552178		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000456847	ENST00000393249		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000456847	ENST00000261183		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000456847	ENST00000393250		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000456847	ENST00000552178		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266679	ENST00000393249		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266679	ENST00000261183		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266679	ENST00000393250		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266679	ENST00000552178		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000550987	ENST00000393249		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000550987	ENST00000261183		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000550987	ENST00000393250		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000550987	ENST00000552178		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000551516	ENST00000393249		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000551516	ENST00000261183		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000551516	ENST00000393250		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000551516	ENST00000552178		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	CPSF6	chr12	69633486	+	OSBPL8	chr12	76881398	-
Frame-shit	ENST00000548567	ENST00000338193		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CS	chr12	56667371	-	PRIM1	chr12	57125518	-
5CDS-intron	ENST00000548567	ENST00000552408		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CS	chr12	56667371	-	PRIM1	chr12	57125518	-
Frame-shit	ENST00000351328	ENST00000338193		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CS	chr12	56667371	-	PRIM1	chr12	57125518	-
5CDS-intron	ENST00000351328	ENST00000552408		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CS	chr12	56667371	-	PRIM1	chr12	57125518	-
Frame-shit	ENST00000542324	ENST00000338193		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CS	chr12	56667371	-	PRIM1	chr12	57125518	-
5CDS-intron	ENST00000542324	ENST00000552408		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	CS	chr12	56667371	-	PRIM1	chr12	57125518	-
intron-3CDS	ENST00000400967	ENST00000366932		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
intron-3UTR	ENST00000400967	ENST00000491428		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
5UTR-3CDS	ENST00000235453	ENST00000366932		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
5UTR-3UTR	ENST00000235453	ENST00000491428		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
In-frame	ENST00000367396	ENST00000366932		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
5CDS-3UTR	ENST00000367396	ENST00000491428		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
5UTR-3CDS	ENST00000477581	ENST00000366932		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
5UTR-3UTR	ENST00000477581	ENST00000491428		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	DENND1B	chr1	197741998	-	RRP15	chr1	218475636	+
intron-3CDS	ENST00000537045	ENST00000353891		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-3CDS	ENST00000537045	ENST00000263200		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-3CDS	ENST00000537045	ENST00000427926		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-5UTR	ENST00000537045	ENST00000442042		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
Frame-shit	ENST00000263196	ENST00000353891		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
Frame-shit	ENST00000263196	ENST00000263200		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
Frame-shit	ENST00000263196	ENST00000427926		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
5CDS-5UTR	ENST00000263196	ENST00000442042		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
In-frame	ENST00000545799	ENST00000353891		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
In-frame	ENST00000545799	ENST00000263200		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
In-frame	ENST00000545799	ENST00000427926		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
5CDS-5UTR	ENST00000545799	ENST00000442042		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-3CDS	ENST00000473832	ENST00000353891		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-3CDS	ENST00000473832	ENST00000263200		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-3CDS	ENST00000473832	ENST00000427926		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-5UTR	ENST00000473832	ENST00000442042		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19178947	-
intron-3CDS	ENST00000273009	ENST00000392056		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000273009	ENST00000344657		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000360410	ENST00000392056		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000360410	ENST00000344657		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
In-frame	ENST00000325385	ENST00000392056		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
In-frame	ENST00000325385	ENST00000344657		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000409401	ENST00000392056		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000409401	ENST00000344657		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
In-frame	ENST00000409307	ENST00000392056		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
In-frame	ENST00000409307	ENST00000344657		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000470087	ENST00000392056		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
intron-3CDS	ENST00000470087	ENST00000344657		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	DIS3L2	chr2	233164829	+	SPHKAP	chr2	228996801	-
Frame-shit	ENST00000216024	ENST00000216068		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
5CDS-intron	ENST00000216024	ENST00000486019		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
5CDS-intron	ENST00000216024	ENST00000406199		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
In-frame	ENST00000428462	ENST00000216068		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
5CDS-intron	ENST00000428462	ENST00000486019		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
5CDS-intron	ENST00000428462	ENST00000406199		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
intron-3CDS	ENST00000464842	ENST00000216068		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
intron-intron	ENST00000464842	ENST00000486019		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
intron-intron	ENST00000464842	ENST00000406199		TCGA	RV	BRCA	TCGA-BH-A0BC-01A	DMC1	chr22	38962595	-	DNAL4	chr22	39177014	-
In-frame	ENST00000394903	ENST00000433211		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000394903	ENST00000373744		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000394903	ENST00000545309		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
5CDS-intron	ENST00000394903	ENST00000373735		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000338820	ENST00000433211		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000338820	ENST00000373744		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000338820	ENST00000545309		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
5CDS-intron	ENST00000338820	ENST00000373735		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000444643	ENST00000433211		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000444643	ENST00000373744		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
In-frame	ENST00000444643	ENST00000545309		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
5CDS-intron	ENST00000444643	ENST00000373735		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
intron-3CDS	ENST00000461919	ENST00000433211		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
intron-3CDS	ENST00000461919	ENST00000373744		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
intron-3CDS	ENST00000461919	ENST00000545309		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
intron-intron	ENST00000461919	ENST00000373735		TCGA	RV	BRCA	TCGA-S3-AA17-01A	DNAJB12	chr10	74114523	-	CTNNA3	chr10	68979628	-
Frame-shit	ENST00000585892	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000585892	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
5CDS-intron	ENST00000585892	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000314646	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
5CDS-intron	ENST00000314646	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000359692	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
5CDS-intron	ENST00000359692	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000389253	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
5CDS-intron	ENST00000389253	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000355667	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
5CDS-intron	ENST00000355667	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000408974	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
5CDS-intron	ENST00000408974	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000420083		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000449870		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000318511		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000407004		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000589998		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000250241		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000592763		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000588657		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-3CDS	ENST00000591819	ENST00000590261		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
intron-intron	ENST00000591819	ENST00000586544		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10829079	+	ILF3	chr19	10787839	+
Frame-shit	ENST00000280333	ENST00000306010		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DOCK1	chr10	128769049	+	MGMT	chr10	131506159	+
5CDS-3UTR	ENST00000280333	ENST00000462672		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DOCK1	chr10	128769049	+	MGMT	chr10	131506159	+
intron-3CDS	ENST00000484400	ENST00000306010		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DOCK1	chr10	128769049	+	MGMT	chr10	131506159	+
intron-3UTR	ENST00000484400	ENST00000462672		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DOCK1	chr10	128769049	+	MGMT	chr10	131506159	+
Frame-shit	ENST00000372546	ENST00000372648		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5CDS-5UTR	ENST00000372546	ENST00000539497		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5CDS-3UTR	ENST00000372546	ENST00000466056		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5CDS-3UTR	ENST00000372546	ENST00000223865		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
Frame-shit	ENST00000406974	ENST00000372648		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5CDS-5UTR	ENST00000406974	ENST00000539497		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5CDS-3UTR	ENST00000406974	ENST00000466056		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5CDS-3UTR	ENST00000406974	ENST00000223865		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5UTR-3CDS	ENST00000540102	ENST00000372648		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5UTR-5UTR	ENST00000540102	ENST00000539497		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5UTR-3UTR	ENST00000540102	ENST00000466056		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
5UTR-3UTR	ENST00000540102	ENST00000223865		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	DOLPP1	chr9	131843486	+	TBC1D13	chr9	131559334	+
Frame-shit	ENST00000310974	ENST00000377559		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
Frame-shit	ENST00000310974	ENST00000265459		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
Frame-shit	ENST00000310974	ENST00000301894		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
Frame-shit	ENST00000310974	ENST00000377551		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
Frame-shit	ENST00000310974	ENST00000409571		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
5CDS-intron	ENST00000310974	ENST00000496291		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
intron-3CDS	ENST00000462134	ENST00000377559		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
intron-3CDS	ENST00000462134	ENST00000265459		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
intron-3CDS	ENST00000462134	ENST00000301894		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
intron-3CDS	ENST00000462134	ENST00000377551		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
intron-3CDS	ENST00000462134	ENST00000409571		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
intron-intron	ENST00000462134	ENST00000496291		TCGA	RV	BRCA	TCGA-A8-A091-01A	DPY19L1	chr7	35050080	-	NRXN2	chr11	64387844	-
Frame-shit	ENST00000496972	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000496972	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000496972	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000496972	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000496972	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000405222	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000405222	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000405222	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000405222	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000405222	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407661	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407661	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407661	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407661	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000407661	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000406818	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000406818	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000406818	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000406818	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000406818	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407038	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407038	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407038	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407038	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000407038	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000404103	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000404103	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000404103	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000404103	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000404103	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407186	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407186	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407186	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000407186	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000407186	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000288642	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000288642	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000288642	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
Frame-shit	ENST00000288642	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-intron	ENST00000288642	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
intron-3CDS	ENST00000545439	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
intron-3CDS	ENST00000545439	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
intron-3CDS	ENST00000545439	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
intron-3CDS	ENST00000545439	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
intron-intron	ENST00000545439	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5UTR-3CDS	ENST00000472690	ENST00000435504		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5UTR-3CDS	ENST00000472690	ENST00000336112		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5UTR-3CDS	ENST00000472690	ENST00000272341		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5UTR-3CDS	ENST00000472690	ENST00000404843		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5UTR-intron	ENST00000472690	ENST00000497092		TCGA	RV	BRCA	TCGA-BH-A18V-06A	DTNB	chr2	25818955	-	ASXL2	chr2	25973282	-
5CDS-5UTR	ENST00000263026	ENST00000389397		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EEF2K	chr16	22285071	+	VWA3A	chr16	22155568	+
5CDS-5UTR	ENST00000263026	ENST00000389398		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EEF2K	chr16	22285071	+	VWA3A	chr16	22155568	+
5CDS-intron	ENST00000263026	ENST00000563755		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EEF2K	chr16	22285071	+	VWA3A	chr16	22155568	+
intron-5UTR	ENST00000561791	ENST00000389397		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EEF2K	chr16	22285071	+	VWA3A	chr16	22155568	+
intron-5UTR	ENST00000561791	ENST00000389398		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EEF2K	chr16	22285071	+	VWA3A	chr16	22155568	+
intron-intron	ENST00000561791	ENST00000563755		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EEF2K	chr16	22285071	+	VWA3A	chr16	22155568	+
In-frame	ENST00000368409	ENST00000382369		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000368409	ENST00000360321		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000368409	ENST00000400269		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000359751	ENST00000382369		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000359751	ENST00000360321		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000359751	ENST00000400269		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000427683	ENST00000382369		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000427683	ENST00000360321		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000427683	ENST00000400269		TCGA	RV	BRCA	TCGA-E2-A109-01A	EFNA4	chr1	155039916	+	C20orf96	chr20	264722	-
In-frame	ENST00000409013	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
In-frame	ENST00000409890	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
3UTR-3CDS	ENST00000490508	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
In-frame	ENST00000409344	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
In-frame	ENST00000428955	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
In-frame	ENST00000393852	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
In-frame	ENST00000315658	ENST00000317907		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ELMOD3	chr2	85589383	+	TTC27	chr2	32927874	+
Frame-shit	ENST00000318522	ENST00000378669		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000318522	ENST00000482463		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000318522	ENST00000234301		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000318522	ENST00000463055		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
Frame-shit	ENST00000402711	ENST00000378669		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000402711	ENST00000482463		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000402711	ENST00000234301		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000402711	ENST00000463055		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
3UTR-3CDS	ENST00000482660	ENST00000378669		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
3UTR-5UTR	ENST00000482660	ENST00000482463		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
3UTR-5UTR	ENST00000482660	ENST00000234301		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
3UTR-5UTR	ENST00000482660	ENST00000463055		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
Frame-shit	ENST00000401738	ENST00000378669		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000401738	ENST00000482463		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000401738	ENST00000234301		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-5UTR	ENST00000401738	ENST00000463055		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
intron-3CDS	ENST00000453191	ENST00000378669		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
intron-5UTR	ENST00000453191	ENST00000482463		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
intron-5UTR	ENST00000453191	ENST00000234301		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
intron-5UTR	ENST00000453191	ENST00000463055		TCGA	RV	BRCA	TCGA-E9-A245-01A	EML4	chr2	42396776	+	COX7A2L	chr2	42580483	-
5CDS-intron	ENST00000455140	ENST00000269881		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000455140	ENST00000602234		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000248070	ENST00000269881		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000248070	ENST00000602234		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000535753	ENST00000269881		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000535753	ENST00000602234		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000594975	ENST00000269881		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000594975	ENST00000602234		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
intron-intron	ENST00000602009	ENST00000269881		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
intron-intron	ENST00000602009	ENST00000602234		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
intron-intron	ENST00000597937	ENST00000269881		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
intron-intron	ENST00000597937	ENST00000602234		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	EPS15L1	chr19	16503115	-	CALR3	chr19	16689220	-
5CDS-5UTR	ENST00000584601	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000584601	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000584601	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000584601	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000406381	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000406381	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000406381	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000406381	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000541774	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000541774	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000541774	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000541774	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000445658	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000445658	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000445658	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000445658	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000540147	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000540147	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000540147	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000540147	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000584450	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000584450	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000584450	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000584450	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000269571	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000269571	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000269571	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000269571	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000578199	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000578199	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000578199	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000578199	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000540042	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000540042	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000540042	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000540042	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000584888	ENST00000255559		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000584888	ENST00000542342		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
intron-intron	ENST00000584888	ENST00000579988		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000584888	ENST00000579732		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	ERBB2	chr17	37871789	+	SLC39A11	chr17	71084914	-
5UTR-3CDS	ENST00000269214	ENST00000382303		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-3UTR	ENST00000269214	ENST00000489369		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-3UTR	ENST00000269214	ENST00000382297		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-5UTR	ENST00000269214	ENST00000382293		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-3CDS	ENST00000580101	ENST00000382303		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-3UTR	ENST00000580101	ENST00000489369		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-3UTR	ENST00000580101	ENST00000382297		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
5UTR-5UTR	ENST00000580101	ENST00000382293		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	ESCO1	chr18	19180584	-	KANK1	chr9	710804	+
Frame-shit	ENST00000440973	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000440973	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000440973	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000440973	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000440973	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000338799	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000338799	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000338799	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000338799	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000338799	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000456483	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000456483	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000456483	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000456483	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000456483	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000443427	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000443427	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000443427	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000443427	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000443427	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000206249	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000206249	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000206249	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000206249	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000206249	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-3CDS	ENST00000406599	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-3CDS	ENST00000406599	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-intron	ENST00000406599	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-intron	ENST00000406599	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-intron	ENST00000406599	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000427531	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000427531	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000427531	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000427531	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000427531	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-3CDS	ENST00000482101	ENST00000380672		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-3CDS	ENST00000482101	ENST00000380667		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-intron	ENST00000482101	ENST00000545497		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-intron	ENST00000482101	ENST00000380666		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
intron-intron	ENST00000482101	ENST00000471301		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	ESR1	chr6	152163922	+	BNC2	chr9	16738483	-
In-frame	ENST00000402714	ENST00000327921		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000402714	ENST00000262233		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000402714	ENST00000334192		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
5CDS-intron	ENST00000402714	ENST00000556758		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000544450	ENST00000327921		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000544450	ENST00000262233		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000544450	ENST00000334192		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
5CDS-intron	ENST00000544450	ENST00000556758		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000392920	ENST00000327921		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000392920	ENST00000262233		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000392920	ENST00000334192		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
5CDS-intron	ENST00000392920	ENST00000556758		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
3UTR-3CDS	ENST00000555048	ENST00000327921		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
3UTR-3CDS	ENST00000555048	ENST00000262233		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
3UTR-3CDS	ENST00000555048	ENST00000334192		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
3UTR-intron	ENST00000555048	ENST00000556758		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	EVL	chr14	100551192	+	EML1	chr14	100380903	+
In-frame	ENST00000378204	ENST00000409003		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000314727		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000428826	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
Frame-shit	ENST00000415827	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
Frame-shit	ENST00000435174	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
In-frame	ENST00000592743	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
Frame-shit	ENST00000585893	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
In-frame	ENST00000590078	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
intron-3CDS	ENST00000590783	ENST00000423485		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	EZH1	chr17	40854895	-	TOP2A	chr17	38561135	-
5CDS-intron	ENST00000396153	ENST00000468521		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000396153	ENST00000403528		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000396153	ENST00000373706		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000396153	ENST00000373705		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000371778	ENST00000468521		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000371778	ENST00000403528		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000371778	ENST00000373706		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000371778	ENST00000373705		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000545823	ENST00000468521		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000545823	ENST00000403528		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000545823	ENST00000373706		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
5CDS-intron	ENST00000545823	ENST00000373705		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
intron-intron	ENST00000472808	ENST00000468521		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
intron-intron	ENST00000472808	ENST00000403528		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
intron-intron	ENST00000472808	ENST00000373706		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
intron-intron	ENST00000472808	ENST00000373705		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FAF1	chr1	50956260	-	HCRTR1	chr1	32098037	+
intron-3CDS	ENST00000373314	ENST00000545178		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
intron-3CDS	ENST00000373314	ENST00000240651		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
intron-5UTR	ENST00000373314	ENST00000538582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
In-frame	ENST00000373312	ENST00000545178		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
In-frame	ENST00000373312	ENST00000240651		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
5CDS-5UTR	ENST00000373312	ENST00000538582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
5UTR-3CDS	ENST00000468379	ENST00000545178		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
5UTR-3CDS	ENST00000468379	ENST00000240651		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
5UTR-5UTR	ENST00000468379	ENST00000538582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	FAM129B	chr9	130331099	-	PYROXD1	chr12	21593302	+
5UTR-3CDS	ENST00000064778	ENST00000444914		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-3CDS	ENST00000064778	ENST00000314669		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-intron	ENST00000064778	ENST00000545060		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-5UTR	ENST00000064778	ENST00000537681		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-3CDS	ENST00000450446	ENST00000444914		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-3CDS	ENST00000450446	ENST00000314669		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-intron	ENST00000450446	ENST00000545060		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-5UTR	ENST00000450446	ENST00000537681		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-3CDS	ENST00000356467	ENST00000444914		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-3CDS	ENST00000356467	ENST00000314669		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-intron	ENST00000356467	ENST00000545060		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
5UTR-5UTR	ENST00000356467	ENST00000537681		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	FAM168A	chr11	73308968	-	SLC13A2	chr17	26816232	+
intron-3CDS	ENST00000416284	ENST00000258111		TCGA	RV	BRCA	TCGA-C8-A12U-01A	FAM19A2	chr12	62417433	-	KCNMB4	chr12	70824265	+
5UTR-3CDS	ENST00000551619	ENST00000258111		TCGA	RV	BRCA	TCGA-C8-A12U-01A	FAM19A2	chr12	62417433	-	KCNMB4	chr12	70824265	+
intron-3CDS	ENST00000550003	ENST00000258111		TCGA	RV	BRCA	TCGA-C8-A12U-01A	FAM19A2	chr12	62417433	-	KCNMB4	chr12	70824265	+
intron-3CDS	ENST00000551449	ENST00000258111		TCGA	RV	BRCA	TCGA-C8-A12U-01A	FAM19A2	chr12	62417433	-	KCNMB4	chr12	70824265	+
intron-3CDS	ENST00000549456	ENST00000258111		TCGA	RV	BRCA	TCGA-C8-A12U-01A	FAM19A2	chr12	62417433	-	KCNMB4	chr12	70824265	+
In-frame	ENST00000337318	ENST00000373100		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000337318	ENST00000373092		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000337318	ENST00000373077		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000337318	ENST00000423407		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000337318	ENST00000341458		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000337318	ENST00000426287		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
5CDS-intron	ENST00000337318	ENST00000485914		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000392754	ENST00000373100		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000392754	ENST00000373092		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000392754	ENST00000373077		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000392754	ENST00000423407		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000392754	ENST00000341458		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000392754	ENST00000426287		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
5CDS-intron	ENST00000392754	ENST00000485914		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000280780	ENST00000373100		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000280780	ENST00000373092		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000280780	ENST00000373077		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000280780	ENST00000423407		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000280780	ENST00000341458		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
In-frame	ENST00000280780	ENST00000426287		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
5CDS-intron	ENST00000280780	ENST00000485914		TCGA	RV	BRCA	TCGA-E2-A1IN-01A	FAM53B	chr10	126370176	-	SGK2	chr20	42198025	+
Frame-shit	ENST00000217429	ENST00000302516		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	FAM83D	chr20	37570769	+	SF3B3	chr16	70597779	+
intron-3CDS	ENST00000538689	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000538689	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000538689	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000538689	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000538689	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000220584	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000220584	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000220584	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-5UTR	ENST00000220584	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-intron	ENST00000220584	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000446331	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000446331	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000446331	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000446331	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000446331	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000443614	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000443614	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000443614	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-5UTR	ENST00000443614	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
5CDS-intron	ENST00000443614	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525900	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525900	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525900	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000525900	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000525900	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528812	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528812	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528812	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000528812	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000528812	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000530664	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000530664	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000530664	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000530664	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000530664	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528643	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528643	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000528643	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000528643	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000528643	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525777	ENST00000521022		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525777	ENST00000416984		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-3CDS	ENST00000525777	ENST00000521777		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-5UTR	ENST00000525777	ENST00000397363		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
intron-intron	ENST00000525777	ENST00000521070		TCGA	RV	BRCA	TCGA-E2-A15K-01A	FDFT1	chr8	11660440	+	INTS9	chr8	28707790	-
Frame-shit	ENST00000343958	ENST00000552283		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
Frame-shit	ENST00000343958	ENST00000251074		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
5CDS-5UTR	ENST00000343958	ENST00000543021		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
Frame-shit	ENST00000546711	ENST00000552283		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
Frame-shit	ENST00000546711	ENST00000251074		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
5CDS-5UTR	ENST00000546711	ENST00000543021		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
Frame-shit	ENST00000549499	ENST00000552283		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
Frame-shit	ENST00000549499	ENST00000251074		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
5CDS-5UTR	ENST00000549499	ENST00000543021		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
intron-3CDS	ENST00000550368	ENST00000552283		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
intron-3CDS	ENST00000550368	ENST00000251074		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
intron-5UTR	ENST00000550368	ENST00000543021		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	FGD6	chr12	95546587	-	NUP37	chr12	102479634	-
Frame-shit	ENST00000335255	ENST00000587541		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
Frame-shit	ENST00000335255	ENST00000215637		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
5CDS-intron	ENST00000335255	ENST00000346144		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
5CDS-intron	ENST00000335255	ENST00000382683		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
intron-3CDS	ENST00000529652	ENST00000587541		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
intron-3CDS	ENST00000529652	ENST00000215637		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
intron-intron	ENST00000529652	ENST00000346144		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
intron-intron	ENST00000529652	ENST00000382683		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	FOXK2	chr17	80478183	+	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000318789	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318789	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318789	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318789	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318789	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318789	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-3CDS	ENST00000475937	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000475937	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000475937	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000475937	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000475937	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000475937	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-3CDS	ENST00000493089	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000493089	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000493089	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000493089	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000493089	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000493089	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000484350	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000484350	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000484350	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000484350	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000484350	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000484350	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-3CDS	ENST00000318779	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318779	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318779	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318779	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318779	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
5UTR-5UTR	ENST00000318779	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000491238	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000491238	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000491238	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000491238	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000491238	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000491238	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000498215	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000498215	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000498215	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000498215	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000498215	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000498215	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000468577	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468577	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468577	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468577	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468577	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468577	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000472382	ENST00000425534		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000472382	ENST00000389826		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000472382	ENST00000448225		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000472382	ENST00000295612		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000472382	ENST00000468147		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000472382	ENST00000421769		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000340149	ENST00000409709		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000340149	ENST00000409893		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000340149	ENST00000458637		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000340149	ENST00000409619		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
intron-intron	ENST00000340149	ENST00000605744		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
In-frame	ENST00000361507	ENST00000409709		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
In-frame	ENST00000361507	ENST00000409893		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
In-frame	ENST00000361507	ENST00000458637		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
In-frame	ENST00000361507	ENST00000409619		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
5CDS-intron	ENST00000361507	ENST00000605744		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
5UTR-3CDS	ENST00000526030	ENST00000409709		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
5UTR-3CDS	ENST00000526030	ENST00000409893		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
5UTR-3CDS	ENST00000526030	ENST00000458637		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
5UTR-3CDS	ENST00000526030	ENST00000409619		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
5UTR-intron	ENST00000526030	ENST00000605744		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	GAB2	chr11	78128692	-	MYO7A	chr11	76866953	+
In-frame	ENST00000333743	ENST00000353809		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
In-frame	ENST00000333743	ENST00000354638		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
In-frame	ENST00000333743	ENST00000382996		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
In-frame	ENST00000555083	ENST00000353809		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
In-frame	ENST00000555083	ENST00000354638		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
In-frame	ENST00000555083	ENST00000382996		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
intron-3CDS	ENST00000554786	ENST00000353809		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
intron-3CDS	ENST00000554786	ENST00000354638		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
intron-3CDS	ENST00000554786	ENST00000382996		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28211968	-
intron-3CDS	ENST00000482812	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000482812	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000430044	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000430044	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000452146	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000452146	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000434507	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000434507	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000415421	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000415421	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000320311	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000320311	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000422997	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000422997	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-01A	GALNT11	chr7	151724803	+	FKBP3	chr14	45600003	-
In-frame	ENST00000373566	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000373566	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000373566	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000373566	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000373563	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000373563	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000373563	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000373563	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409480	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409480	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409480	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409480	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409547	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409547	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409547	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409547	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409196	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409196	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409196	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409196	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409451	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409451	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409451	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409451	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
3UTR-3CDS	ENST00000482666	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
3UTR-3CDS	ENST00000482666	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
3UTR-5UTR	ENST00000482666	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
3UTR-5UTR	ENST00000482666	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000452341	ENST00000409613		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000452341	ENST00000264059		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000452341	ENST00000409708		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000452341	ENST00000410095		TCGA	RV	BRCA	TCGA-A8-A07U-01A	GIGYF2	chr2	233599948	+	EFHD1	chr2	233527512	+
intron-intron	ENST00000331872	ENST00000484427		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
intron-intron	ENST00000331872	ENST00000371764		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
intron-intron	ENST00000417584	ENST00000484427		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
intron-intron	ENST00000417584	ENST00000371764		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
intron-intron	ENST00000311223	ENST00000484427		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
intron-intron	ENST00000311223	ENST00000371764		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000491322	ENST00000484427		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000491322	ENST00000371764		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000339526	ENST00000484427		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000339526	ENST00000371764		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	GLUL	chr1	182352029	-	DDX27	chr20	47849303	+
In-frame	ENST00000230173	ENST00000458420		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	GPR126	chr6	142630781	+	CLSTN2	chr3	139894793	+
In-frame	ENST00000367608	ENST00000458420		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	GPR126	chr6	142630781	+	CLSTN2	chr3	139894793	+
In-frame	ENST00000296932	ENST00000458420		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	GPR126	chr6	142630781	+	CLSTN2	chr3	139894793	+
In-frame	ENST00000367609	ENST00000458420		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	GPR126	chr6	142630781	+	CLSTN2	chr3	139894793	+
3UTR-3CDS	ENST00000545477	ENST00000458420		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	GPR126	chr6	142630781	+	CLSTN2	chr3	139894793	+
5CDS-intron	ENST00000264235	ENST00000315843		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
5CDS-5UTR	ENST00000264235	ENST00000464295		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
5CDS-intron	ENST00000264235	ENST00000461057		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
5CDS-intron	ENST00000316626	ENST00000315843		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
5CDS-5UTR	ENST00000316626	ENST00000464295		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
5CDS-intron	ENST00000316626	ENST00000461057		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
intron-intron	ENST00000473886	ENST00000315843		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
intron-5UTR	ENST00000473886	ENST00000464295		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
intron-intron	ENST00000473886	ENST00000461057		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	GSK3B	chr3	119562102	-	GPR156	chr3	119963325	-
In-frame	ENST00000355904	ENST00000281038		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	GTF2E2	chr8	30510950	-	NARS2	chr11	78204241	-
In-frame	ENST00000355904	ENST00000528850		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	GTF2E2	chr8	30510950	-	NARS2	chr11	78204241	-
intron-3CDS	ENST00000522833	ENST00000281038		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	GTF2E2	chr8	30510950	-	NARS2	chr11	78204241	-
intron-3CDS	ENST00000522833	ENST00000528850		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	GTF2E2	chr8	30510950	-	NARS2	chr11	78204241	-
5UTR-3UTR	ENST00000476510	ENST00000607124		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5UTR-3UTR	ENST00000476510	ENST00000541790		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5UTR-intron	ENST00000476510	ENST00000339812		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5CDS-3UTR	ENST00000307126	ENST00000607124		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5CDS-3UTR	ENST00000307126	ENST00000541790		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5CDS-intron	ENST00000307126	ENST00000339812		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5CDS-3UTR	ENST00000307114	ENST00000607124		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5CDS-3UTR	ENST00000307114	ENST00000541790		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
5CDS-intron	ENST00000307114	ENST00000339812		TCGA	RV	BRCA	TCGA-A8-A07J-01A	GTPBP2	chr6	43589740	-	HIST1H2BJ	chr6	27094241	-
Frame-shit	ENST00000311127	ENST00000393469		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
Frame-shit	ENST00000311127	ENST00000423114		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
Frame-shit	ENST00000311127	ENST00000469902		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
5CDS-intron	ENST00000311127	ENST00000314584		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
5CDS-intron	ENST00000311127	ENST00000430155		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
5CDS-intron	ENST00000311127	ENST00000465475		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
intron-3CDS	ENST00000477536	ENST00000393469		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
intron-3CDS	ENST00000477536	ENST00000423114		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
intron-3CDS	ENST00000477536	ENST00000469902		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
intron-intron	ENST00000477536	ENST00000314584		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
intron-intron	ENST00000477536	ENST00000430155		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
intron-intron	ENST00000477536	ENST00000465475		TCGA	RV	BRCA	TCGA-A8-A07C-01A	HEG1	chr3	124696703	-	SLC12A8	chr3	124811042	-
Frame-shit	ENST00000358691	ENST00000269346		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
Frame-shit	ENST00000358691	ENST00000529107		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
5CDS-intron	ENST00000358691	ENST00000534346		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
5CDS-intron	ENST00000358691	ENST00000441391		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
Frame-shit	ENST00000580168	ENST00000269346		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
Frame-shit	ENST00000580168	ENST00000529107		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
5CDS-intron	ENST00000580168	ENST00000534346		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
5CDS-intron	ENST00000580168	ENST00000441391		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
intron-3CDS	ENST00000580662	ENST00000269346		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
intron-3CDS	ENST00000580662	ENST00000529107		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
intron-intron	ENST00000580662	ENST00000534346		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
intron-intron	ENST00000580662	ENST00000441391		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HELZ	chr17	65174775	-	TTYH2	chr17	72248373	+
In-frame	ENST00000344330	ENST00000609713		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
In-frame	ENST00000344330	ENST00000288309		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
In-frame	ENST00000407780	ENST00000609713		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
In-frame	ENST00000407780	ENST00000288309		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
intron-3CDS	ENST00000400379	ENST00000609713		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
intron-3CDS	ENST00000400379	ENST00000288309		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
In-frame	ENST00000400377	ENST00000609713		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
In-frame	ENST00000400377	ENST00000288309		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ICOSLG	chr21	45649937	-	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000369483	ENST00000356554		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	IGSF3	chr1	117208906	-	MAN1A2	chr1	117944808	+
5CDS-intron	ENST00000369483	ENST00000482811		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	IGSF3	chr1	117208906	-	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000369486	ENST00000356554		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	IGSF3	chr1	117208906	-	MAN1A2	chr1	117944808	+
5CDS-intron	ENST00000369486	ENST00000482811		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	IGSF3	chr1	117208906	-	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000318837	ENST00000356554		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	IGSF3	chr1	117208906	-	MAN1A2	chr1	117944808	+
5CDS-intron	ENST00000318837	ENST00000482811		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	IGSF3	chr1	117208906	-	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000361170	ENST00000368192		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	IQGAP3	chr1	156539168	-	ETV3	chr1	157095771	-
5CDS-intron	ENST00000361170	ENST00000326786		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	IQGAP3	chr1	156539168	-	ETV3	chr1	157095771	-
5CDS-intron	ENST00000361170	ENST00000460850		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	IQGAP3	chr1	156539168	-	ETV3	chr1	157095771	-
intron-3CDS	ENST00000498755	ENST00000368192		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	IQGAP3	chr1	156539168	-	ETV3	chr1	157095771	-
intron-intron	ENST00000498755	ENST00000326786		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	IQGAP3	chr1	156539168	-	ETV3	chr1	157095771	-
intron-intron	ENST00000498755	ENST00000460850		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	IQGAP3	chr1	156539168	-	ETV3	chr1	157095771	-
Frame-shit	ENST00000397560	ENST00000354725		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	JHDM1D	chr7	139793856	-	SND1	chr7	127631000	+
In-frame	ENST00000397560	ENST00000467238		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	JHDM1D	chr7	139793856	-	SND1	chr7	127631000	+
intron-3CDS	ENST00000006967	ENST00000354725		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	JHDM1D	chr7	139793856	-	SND1	chr7	127631000	+
intron-3CDS	ENST00000006967	ENST00000467238		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	JHDM1D	chr7	139793856	-	SND1	chr7	127631000	+
5CDS-5UTR	ENST00000404771	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404771	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404771	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404771	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372440	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372440	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372440	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372440	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372443	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372443	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372443	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000372443	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286628	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286628	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286628	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286628	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286627	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286627	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286627	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000286627	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000354353	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000354353	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000354353	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000354353	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404857	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404857	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404857	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000404857	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000406533	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000406533	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000406533	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
5CDS-5UTR	ENST00000406533	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000484507	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000484507	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000484507	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000484507	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000481070	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000481070	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000481070	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000481070	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000480683	ENST00000372979		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000480683	ENST00000454759		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000480683	ENST00000430082		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
intron-5UTR	ENST00000480683	ENST00000610256		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	KCNMA1	chr10	78943179	-	ECD	chr10	74923708	-
In-frame	ENST00000404771	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000404771	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000404771	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000372440	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000372440	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000372440	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000372443	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000372443	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000372443	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000286628	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000286628	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000286628	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000286627	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000286627	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000286627	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000354353	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000354353	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000354353	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000404857	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000404857	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000404857	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
In-frame	ENST00000406533	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000406533	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000406533	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3CDS	ENST00000484507	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3UTR	ENST00000484507	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3UTR	ENST00000484507	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3CDS	ENST00000481070	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3UTR	ENST00000481070	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3UTR	ENST00000481070	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3CDS	ENST00000480683	ENST00000358559		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3UTR	ENST00000480683	ENST00000474170		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
intron-3UTR	ENST00000480683	ENST00000298239		TCGA	RV	BRCA	TCGA-A2-A25D-01A	KCNMA1	chr10	78869931	-	MSMB	chr10	51555731	+
Frame-shit	ENST00000373731	ENST00000341776		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5CDS-5UTR	ENST00000373731	ENST00000397311		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5CDS-intron	ENST00000373731	ENST00000541660		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5CDS-intron	ENST00000373731	ENST00000474854		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
intron-3CDS	ENST00000474988	ENST00000341776		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
intron-5UTR	ENST00000474988	ENST00000397311		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
intron-intron	ENST00000474988	ENST00000541660		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
intron-intron	ENST00000474988	ENST00000474854		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-3CDS	ENST00000544295	ENST00000341776		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-5UTR	ENST00000544295	ENST00000397311		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-intron	ENST00000544295	ENST00000541660		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-intron	ENST00000544295	ENST00000474854		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
Frame-shit	ENST00000449081	ENST00000341776		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5CDS-5UTR	ENST00000449081	ENST00000397311		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5CDS-intron	ENST00000449081	ENST00000541660		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5CDS-intron	ENST00000449081	ENST00000474854		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-3CDS	ENST00000536244	ENST00000341776		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-5UTR	ENST00000536244	ENST00000397311		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-intron	ENST00000536244	ENST00000541660		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
5UTR-intron	ENST00000536244	ENST00000474854		TCGA	RV	BRCA	TCGA-D8-A27H-01A	KCTD20	chr6	36438034	+	JARID2	chr6	15374348	+
intron-3CDS	ENST00000257765	ENST00000370363		TCGA	RV	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	74001721	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000257765	ENST00000370359		TCGA	RV	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	74001721	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000370384	ENST00000370363		TCGA	RV	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	74001721	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000370384	ENST00000370359		TCGA	RV	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	74001721	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000484801	ENST00000370363		TCGA	RV	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	74001721	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000484801	ENST00000370359		TCGA	RV	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	74001721	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000503278	ENST00000513000		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000509777		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000262992		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000308502		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000508116		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000507861		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000506217		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
intron-intron	ENST00000503278	ENST00000508084		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
In-frame	ENST00000425103	ENST00000513000		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000509777		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000262992		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000308502		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000508116		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000507861		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000506217		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000425103	ENST00000508084		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
In-frame	ENST00000307659	ENST00000513000		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000509777		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000262992		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000308502		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000508116		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000507861		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000506217		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000307659	ENST00000508084		TCGA	RV	BRCA	TCGA-LL-A441-01A	KIAA0232	chr4	6826411	+	INPP4B	chr4	142950067	-
Frame-shit	ENST00000440693	ENST00000240488		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
5CDS-intron	ENST00000440693	ENST00000503967		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
5CDS-intron	ENST00000440693	ENST00000504860		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
Frame-shit	ENST00000409663	ENST00000240488		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
5CDS-intron	ENST00000409663	ENST00000503967		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
5CDS-intron	ENST00000409663	ENST00000504860		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
Frame-shit	ENST00000409959	ENST00000240488		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
5CDS-intron	ENST00000409959	ENST00000503967		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
5CDS-intron	ENST00000409959	ENST00000504860		TCGA	RV	BRCA	TCGA-C8-A12K-01A	KIAA0922	chr4	154525582	+	MND1	chr4	154315414	+
Frame-shit	ENST00000308330	ENST00000307439		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
Frame-shit	ENST00000308330	ENST00000342081		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
Frame-shit	ENST00000308330	ENST00000395777		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
Frame-shit	ENST00000308330	ENST00000335049		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
5CDS-intron	ENST00000308330	ENST00000512591		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
intron-3CDS	ENST00000541171	ENST00000307439		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
intron-3CDS	ENST00000541171	ENST00000342081		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
intron-3CDS	ENST00000541171	ENST00000395777		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
intron-3CDS	ENST00000541171	ENST00000335049		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
intron-intron	ENST00000541171	ENST00000512591		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	LEMD3	chr12	65637249	+	RASSF6	chr4	74459310	-
5CDS-intron	ENST00000424843	ENST00000406091		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000424843	ENST00000262231		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000424843	ENST00000507740		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000424843	ENST00000522174		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000424843	ENST00000436393		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000424843	ENST00000339750		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000276654	ENST00000406091		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000276654	ENST00000262231		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000276654	ENST00000507740		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000276654	ENST00000522174		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000276654	ENST00000436393		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-intron	ENST00000276654	ENST00000339750		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
intron-intron	ENST00000518375	ENST00000406091		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
intron-intron	ENST00000518375	ENST00000262231		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
intron-intron	ENST00000518375	ENST00000507740		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
intron-intron	ENST00000518375	ENST00000522174		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
intron-intron	ENST00000518375	ENST00000436393		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
intron-intron	ENST00000518375	ENST00000339750		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	LRP12	chr8	105521167	-	RIMS2	chr8	105160835	+
5CDS-5UTR	ENST00000261349	ENST00000332427		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
5CDS-intron	ENST00000261349	ENST00000537507		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
5CDS-5UTR	ENST00000261349	ENST00000540510		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
5CDS-5UTR	ENST00000543091	ENST00000332427		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
5CDS-intron	ENST00000543091	ENST00000537507		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
5CDS-5UTR	ENST00000543091	ENST00000540510		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
intron-5UTR	ENST00000540415	ENST00000332427		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
intron-intron	ENST00000540415	ENST00000537507		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
intron-5UTR	ENST00000540415	ENST00000540510		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	LRP6	chr12	12397196	-	GPR19	chr12	12815404	-
Frame-shit	ENST00000519595	ENST00000378204		TCGA	RV	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687730	-	EXT1	chr8	118849440	-
Frame-shit	ENST00000518642	ENST00000378204		TCGA	RV	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687730	-	EXT1	chr8	118849440	-
Frame-shit	ENST00000250173	ENST00000378204		TCGA	RV	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687730	-	EXT1	chr8	118849440	-
5UTR-3CDS	ENST00000520446	ENST00000378204		TCGA	RV	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687730	-	EXT1	chr8	118849440	-
In-frame	ENST00000404816	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404816	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404816	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404816	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404816	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000404816	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000404816	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000354476	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000354476	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000354476	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000354476	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000354476	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000354476	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000354476	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000390003	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000390003	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000390003	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000390003	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000390003	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000390003	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000390003	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000418533	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000418533	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000418533	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000418533	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000418533	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000418533	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000418533	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000402934	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000402934	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000402934	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000402934	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000402934	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000402934	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000402934	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404525	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404525	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404525	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404525	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404525	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000404525	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000404525	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000407925	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000407925	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000407925	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000407925	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000407925	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000407925	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
5CDS-intron	ENST00000407925	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000272273	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000272273	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000272273	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000272273	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000272273	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-intron	ENST00000272273	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-intron	ENST00000272273	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000498013	ENST00000398842		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000498013	ENST00000398809		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000498013	ENST00000461841		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000498013	ENST00000299366		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-3CDS	ENST00000498013	ENST00000224721		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-intron	ENST00000498013	ENST00000398788		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
intron-intron	ENST00000498013	ENST00000475158		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	LTBP1	chr2	33447218	+	CDH23	chr10	73269839	+
In-frame	ENST00000404816	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000354476	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000390003	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000418533	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000402934	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000404525	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000407925	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000272273	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
intron-3CDS	ENST00000498013	ENST00000262096		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	LTBP1	chr2	33540336	+	ZDHHC2	chr8	17042298	+
In-frame	ENST00000356554	ENST00000369466		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	MAN1A2	chr1	117963271	+	TTF2	chr1	117639973	+
5CDS-intron	ENST00000356554	ENST00000480701		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	MAN1A2	chr1	117963271	+	TTF2	chr1	117639973	+
intron-3CDS	ENST00000482811	ENST00000369466		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	MAN1A2	chr1	117963271	+	TTF2	chr1	117639973	+
intron-intron	ENST00000482811	ENST00000480701		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	MAN1A2	chr1	117963271	+	TTF2	chr1	117639973	+
5CDS-3UTR	ENST00000342679	ENST00000519049		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000342679	ENST00000523211		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000342679	ENST00000328472		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
3UTR-3UTR	ENST00000534743	ENST00000519049		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
3UTR-3UTR	ENST00000534743	ENST00000523211		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
3UTR-3UTR	ENST00000534743	ENST00000328472		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000361818	ENST00000519049		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000361818	ENST00000523211		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000361818	ENST00000328472		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000316920	ENST00000519049		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000316920	ENST00000523211		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000316920	ENST00000328472		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MAP2K3	chr17	21188281	+	NKAIN3	chr8	63492098	+
In-frame	ENST00000013125	ENST00000245441		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
In-frame	ENST00000013125	ENST00000389868		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
In-frame	ENST00000013125	ENST00000530997		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
In-frame	ENST00000013125	ENST00000382043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
In-frame	ENST00000013125	ENST00000382041		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
In-frame	ENST00000013125	ENST00000324330		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
In-frame	ENST00000013125	ENST00000453196		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
5CDS-intron	ENST00000013125	ENST00000486200		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000245441		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000389868		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000530997		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000382043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000382041		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000324330		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-3CDS	ENST00000557578	ENST00000453196		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
intron-intron	ENST00000557578	ENST00000486200		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51205004	-
Frame-shit	ENST00000440884	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000440884	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000440884	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000416682	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000416682	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000416682	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000429436	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000429436	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000429436	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000303622	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000303622	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000303622	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000216288	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000216288	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000216288	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000553942	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000553942	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000553942	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000335102	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000335102	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000335102	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000561071	ENST00000555449		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000561071	ENST00000331299		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000561071	ENST00000557611		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	MARK3	chr14	103941547	+	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000372009	ENST00000402363		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000537798		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000350030		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000372052		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000351223		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-intron	ENST00000372009	ENST00000530073		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000402363		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000537798		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000350030		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000372052		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000351223		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-intron	ENST00000361297	ENST00000530073		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000402363		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000537798		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000350030		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000372052		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000351223		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-intron	ENST00000477968	ENST00000530073		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
In-frame	ENST00000216122	ENST00000262879		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
In-frame	ENST00000216122	ENST00000397042		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
In-frame	ENST00000216122	ENST00000397038		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
5CDS-intron	ENST00000216122	ENST00000537204		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
5CDS-intron	ENST00000216122	ENST00000397040		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
5CDS-intron	ENST00000216122	ENST00000490114		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-3CDS	ENST00000382011	ENST00000262879		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-3CDS	ENST00000382011	ENST00000397042		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-3CDS	ENST00000382011	ENST00000397038		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-intron	ENST00000382011	ENST00000537204		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-intron	ENST00000382011	ENST00000397040		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-intron	ENST00000382011	ENST00000490114		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-3CDS	ENST00000465557	ENST00000262879		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-3CDS	ENST00000465557	ENST00000397042		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-3CDS	ENST00000465557	ENST00000397038		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-intron	ENST00000465557	ENST00000537204		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-intron	ENST00000465557	ENST00000397040		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
intron-intron	ENST00000465557	ENST00000490114		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	MCM5	chr22	35799535	+	RALGAPB	chr20	37182510	+
5CDS-5UTR	ENST00000281928	ENST00000265755		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5CDS-5UTR	ENST00000281928	ENST00000455841		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5CDS-5UTR	ENST00000281928	ENST00000424337		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5CDS-5UTR	ENST00000281928	ENST00000476977		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5CDS-5UTR	ENST00000281928	ENST00000489094		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5UTR-5UTR	ENST00000551197	ENST00000265755		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5UTR-5UTR	ENST00000551197	ENST00000455841		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5UTR-5UTR	ENST00000551197	ENST00000424337		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5UTR-5UTR	ENST00000551197	ENST00000476977		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
5UTR-5UTR	ENST00000551197	ENST00000489094		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	MED13L	chr12	116549233	-	GTF2IRD1	chr7	73922405	+
In-frame	ENST00000377184	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000377184	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000377184	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000269095	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000269095	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000269095	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000461854	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000461854	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000461854	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
intron-3CDS	ENST00000520305	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
intron-3CDS	ENST00000520305	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
intron-3CDS	ENST00000520305	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000523501	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000523501	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000523501	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000536246	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000536246	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000536246	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000518766	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000518766	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000518766	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5UTR-3CDS	ENST00000473246	ENST00000225992		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5UTR-3CDS	ENST00000473246	ENST00000591228		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5UTR-3CDS	ENST00000473246	ENST00000587006		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000359523	ENST00000313382		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000359523	ENST00000369354		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000359523	ENST00000369356		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000359523	ENST00000530740		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000359523	ENST00000369359		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000359523	ENST00000369351		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000359523	ENST00000369349		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000369347		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000369348		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000524974		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000313431		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000529945		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000479408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000493130		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000478649		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000359523	ENST00000369345		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000313382		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000369354		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000369356		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000530740		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000369359		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000369351		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000392121	ENST00000369349		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000369347		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000369348		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000524974		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000313431		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000529945		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000479408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000493130		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000478649		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000392121	ENST00000369345		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000313382		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000369354		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000369356		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000530740		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000369359		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000369351		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
Frame-shit	ENST00000474859	ENST00000369349		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000369347		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000369348		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000524974		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000313431		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000529945		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000479408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000493130		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000478649		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
5CDS-intron	ENST00000474859	ENST00000369345		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000313382		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000369354		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000369356		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000530740		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000369359		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000369351		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-3CDS	ENST00000403379	ENST00000369349		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000369347		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000369348		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000524974		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000313431		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000529945		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000479408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000493130		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000478649		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
intron-intron	ENST00000403379	ENST00000369345		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MPZL1	chr1	167691479	+	PDE4DIP	chr1	144946742	-
In-frame	ENST00000310614	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A086-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-5UTR	ENST00000416426	ENST00000570565		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000416426	ENST00000442502		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000416426	ENST00000340813		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000416426	ENST00000451037		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000416426	ENST00000285273		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-intron	ENST00000416426	ENST00000571918		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000284073	ENST00000570565		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000284073	ENST00000442502		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000284073	ENST00000340813		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000284073	ENST00000451037		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000284073	ENST00000285273		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-intron	ENST00000284073	ENST00000571918		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000322684	ENST00000570565		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000322684	ENST00000442502		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000322684	ENST00000340813		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000322684	ENST00000451037		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000322684	ENST00000285273		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
5CDS-intron	ENST00000322684	ENST00000571918		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000442934	ENST00000570565		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000442934	ENST00000442502		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000442934	ENST00000340813		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000442934	ENST00000451037		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000442934	ENST00000285273		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-intron	ENST00000442934	ENST00000571918		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579180	ENST00000570565		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579180	ENST00000442502		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579180	ENST00000340813		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579180	ENST00000451037		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579180	ENST00000285273		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-intron	ENST00000579180	ENST00000571918		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579505	ENST00000570565		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579505	ENST00000442502		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579505	ENST00000340813		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579505	ENST00000451037		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000579505	ENST00000285273		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
intron-intron	ENST00000579505	ENST00000571918		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55339553	+	CA10	chr17	50008492	-
Frame-shit	ENST00000416426	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000416426	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000416426	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000416426	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000284073	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000284073	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000284073	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000284073	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000322684	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000322684	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000322684	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000322684	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000442934	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000442934	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000442934	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000442934	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000579180	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000579180	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000579180	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000579180	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000579505	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000579505	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000579505	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000579505	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	MSI2	chr17	55339553	+	RAD51C	chr17	56772292	+
In-frame	ENST00000278823	ENST00000397542		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
In-frame	ENST00000278823	ENST00000358353		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
In-frame	ENST00000278823	ENST00000349570		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
5CDS-intron	ENST00000278823	ENST00000529337		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
Frame-shit	ENST00000524902	ENST00000397542		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
Frame-shit	ENST00000524902	ENST00000358353		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
Frame-shit	ENST00000524902	ENST00000349570		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
5CDS-intron	ENST00000524902	ENST00000529337		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
Frame-shit	ENST00000527204	ENST00000397542		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
Frame-shit	ENST00000527204	ENST00000358353		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
Frame-shit	ENST00000527204	ENST00000349570		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
5CDS-intron	ENST00000527204	ENST00000529337		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MTA2	chr11	62362736	-	CDHR5	chr11	618111	-
5CDS-5UTR	ENST00000360655	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000360655	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000360655	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000360655	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000360655	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000360655	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000396085	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396085	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000396085	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396085	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396085	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396085	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000349880	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000349880	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000349880	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000349880	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000349880	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000349880	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000396087	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396087	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000396087	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396087	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396087	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000396087	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000527559	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000527559	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000527559	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000527559	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000527559	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000527559	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000540292	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000540292	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-5UTR	ENST00000540292	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000540292	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000540292	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5CDS-intron	ENST00000540292	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-5UTR	ENST00000533917	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000533917	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-5UTR	ENST00000533917	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000533917	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000533917	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000533917	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-5UTR	ENST00000311043	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000311043	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-5UTR	ENST00000311043	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000311043	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000311043	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000311043	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-5UTR	ENST00000534229	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000534229	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-5UTR	ENST00000534229	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000534229	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000534229	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
intron-intron	ENST00000534229	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NAV2	chr11	19968055	+	CNTN5	chr11	99196077	+
5UTR-3CDS	ENST00000383740	ENST00000358864		TCGA	RV	BRCA	TCGA-C8-A274-01A	NBEAL2	chr3	47021402	+	TMC2	chr20	2559792	+
5UTR-intron	ENST00000383740	ENST00000496948		TCGA	RV	BRCA	TCGA-C8-A274-01A	NBEAL2	chr3	47021402	+	TMC2	chr20	2559792	+
In-frame	ENST00000292309	ENST00000358864		TCGA	RV	BRCA	TCGA-C8-A274-01A	NBEAL2	chr3	47021402	+	TMC2	chr20	2559792	+
5CDS-intron	ENST00000292309	ENST00000496948		TCGA	RV	BRCA	TCGA-C8-A274-01A	NBEAL2	chr3	47021402	+	TMC2	chr20	2559792	+
In-frame	ENST00000450053	ENST00000358864		TCGA	RV	BRCA	TCGA-C8-A274-01A	NBEAL2	chr3	47021402	+	TMC2	chr20	2559792	+
5CDS-intron	ENST00000450053	ENST00000496948		TCGA	RV	BRCA	TCGA-C8-A274-01A	NBEAL2	chr3	47021402	+	TMC2	chr20	2559792	+
intron-3CDS	ENST00000377122	ENST00000399298		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-intron	ENST00000377122	ENST00000399293		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-5UTR	ENST00000377122	ENST00000507507		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
Frame-shit	ENST00000417816	ENST00000399298		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
5CDS-intron	ENST00000417816	ENST00000399293		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
5CDS-5UTR	ENST00000417816	ENST00000507507		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
Frame-shit	ENST00000377159	ENST00000399298		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
5CDS-intron	ENST00000377159	ENST00000399293		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
5CDS-5UTR	ENST00000377159	ENST00000507507		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-3CDS	ENST00000377119	ENST00000399298		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-intron	ENST00000377119	ENST00000399293		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-5UTR	ENST00000377119	ENST00000507507		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-3CDS	ENST00000464278	ENST00000399298		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-intron	ENST00000464278	ENST00000399293		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
intron-5UTR	ENST00000464278	ENST00000507507		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63173293	-
Frame-shit	ENST00000371191	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371191	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371191	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371191	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371191	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000407417	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000407417	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000407417	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000407417	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000407417	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
3UTR-3CDS	ENST00000479364	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
3UTR-3CDS	ENST00000479364	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
3UTR-intron	ENST00000479364	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
3UTR-intron	ENST00000479364	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
3UTR-intron	ENST00000479364	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371189	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371189	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371189	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371189	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371189	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000403491	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000403491	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000403491	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000403491	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000403491	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371187	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371187	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371187	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371187	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371187	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000485903	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000485903	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000485903	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000485903	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000485903	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371185	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000371185	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371185	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371185	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
5CDS-intron	ENST00000371185	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-3CDS	ENST00000371184	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-3CDS	ENST00000371184	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-intron	ENST00000371184	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-intron	ENST00000371184	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-intron	ENST00000371184	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-3CDS	ENST00000357977	ENST00000360631		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-3CDS	ENST00000357977	ENST00000255448		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-intron	ENST00000357977	ENST00000379892		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-intron	ENST00000357977	ENST00000379893		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
intron-intron	ENST00000357977	ENST00000460982		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	NFIA	chr1	61798258	+	DCLK1	chr13	36413313	-
Frame-shit	ENST00000428099	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
5CDS-intron	ENST00000428099	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
Frame-shit	ENST00000369966	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
5CDS-intron	ENST00000369966	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
Frame-shit	ENST00000189444	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
5CDS-intron	ENST00000189444	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
intron-3CDS	ENST00000336486	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
intron-intron	ENST00000336486	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	NFKB2	chr10	104156246	+	GBF1	chr10	104128496	+
Frame-shit	ENST00000228928	ENST00000543106		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
Frame-shit	ENST00000228928	ENST00000389385		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
Frame-shit	ENST00000228928	ENST00000447659		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
Frame-shit	ENST00000228928	ENST00000551052		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
Frame-shit	ENST00000228928	ENST00000415485		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
Frame-shit	ENST00000228928	ENST00000548866		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
Frame-shit	ENST00000228928	ENST00000420983		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
5CDS-3UTR	ENST00000228928	ENST00000549913		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000543106		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000389385		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000447659		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000551052		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000415485		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000548866		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000551007	ENST00000420983		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3UTR	ENST00000551007	ENST00000549913		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000543106		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000389385		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000447659		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000551052		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000415485		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000548866		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000548514	ENST00000420983		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3UTR	ENST00000548514	ENST00000549913		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000543106		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000389385		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000447659		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000551052		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000415485		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000548866		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3CDS	ENST00000546638	ENST00000420983		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
intron-3UTR	ENST00000546638	ENST00000549913		TCGA	RV	BRCA	TCGA-A8-A06X-01A	OAS3	chr12	113403834	+	RPH3A	chr12	113325602	+
5UTR-intron	ENST00000319481	ENST00000519476		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000319481	ENST00000297720		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000319481	ENST00000524874		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000319481	ENST00000379957		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000319481	ENST00000523983		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000319481	ENST00000527710		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000319481	ENST00000528827		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000519476		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000297720		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000524874		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000379957		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000523983		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000527710		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399443	ENST00000528827		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000519476		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000297720		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000524874		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000379957		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000523983		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000527710		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000357041	ENST00000528827		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000519476		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000297720		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000524874		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000379957		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000523983		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000527710		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
intron-intron	ENST00000399441	ENST00000528827		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000519476		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000297720		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000524874		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000379957		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000523983		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000527710		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
5UTR-intron	ENST00000582618	ENST00000528827		TCGA	RV	BRCA	TCGA-AN-A0XO-01A	OSBPL1A	chr18	21977619	-	LETM2	chr8	38257790	+
Frame-shit	ENST00000445937	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000445937	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000445937	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000445937	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000445937	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000531443	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000531443	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000531443	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000531443	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000531443	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517566	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517566	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517566	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517566	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000517566	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000452423	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000452423	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000452423	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000452423	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000452423	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000442977	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000442977	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000442977	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000442977	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000442977	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521963	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521963	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521963	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521963	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-intron	ENST00000521963	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000312046	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000312046	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000312046	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000312046	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000312046	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000449762	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000449762	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000449762	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000449762	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-intron	ENST00000449762	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000297447	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000297447	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000297447	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000297447	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-intron	ENST00000297447	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521592	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521592	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521592	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000521592	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-intron	ENST00000521592	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000497705	ENST00000343508		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000497705	ENST00000297405		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000497705	ENST00000455883		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000497705	ENST00000352409		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
intron-intron	ENST00000497705	ENST00000519485		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	OXR1	chr8	107726213	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000376279	ENST00000376355		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000444838		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000376360		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000376354		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000339105		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000376355		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000444838		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000376360		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000376354		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000339105		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000376355		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000444838		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000376360		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000376354		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000339105		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000376355		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000444838		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000376360		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000376354		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000339105		TCGA	RV	BRCA	TCGA-E2-A1IE-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000340635	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000340635	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000340635	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000340635	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000360047	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000360047	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000360047	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000360047	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000507116	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000507116	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000507116	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000507116	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
5UTR-3CDS	ENST00000502484	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
5UTR-3CDS	ENST00000502484	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
5UTR-5UTR	ENST00000502484	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
5UTR-5UTR	ENST00000502484	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000546160	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000546160	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000546160	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000546160	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000502575	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000502575	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000502575	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000502575	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000358923	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000358923	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000358923	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000358923	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000503258	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000503258	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000503258	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000503258	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000405755	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000405755	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000405755	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000405755	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000317118	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000317118	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000317118	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000317118	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000503947	ENST00000426742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-3CDS	ENST00000503947	ENST00000265038		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000503947	ENST00000462279		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
intron-5UTR	ENST00000503947	ENST00000543101		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	PDE4D	chr5	59783769	-	ERCC8	chr5	60198335	-
5CDS-5UTR	ENST00000450793	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000450793	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000450793	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000450793	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000538141	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000538141	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000538141	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000538141	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000380180	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000380180	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000380180	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000380180	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000318007	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000318007	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000318007	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000318007	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000437932	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000437932	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000437932	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000437932	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000317968	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000317968	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000317968	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000317968	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5UTR-5UTR	ENST00000542407	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5UTR-5UTR	ENST00000542407	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5UTR-5UTR	ENST00000542407	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5UTR-3UTR	ENST00000542407	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000508216	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000508216	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000508216	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000508216	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000514743	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000514743	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000514743	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000514743	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
intron-5UTR	ENST00000380176	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
intron-5UTR	ENST00000380176	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
intron-5UTR	ENST00000380176	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
intron-3UTR	ENST00000380176	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000359265	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000359265	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000359265	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000359265	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000512274	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000512274	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000512274	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000512274	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000504489	ENST00000341029		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000504489	ENST00000355810		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000504489	ENST00000349321		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000504489	ENST00000513494		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95376535	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000358912	ENST00000409731		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5CDS-5UTR	ENST00000358912	ENST00000345517		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5CDS-5UTR	ENST00000358912	ENST00000409918		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5CDS-5UTR	ENST00000358912	ENST00000409624		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5UTR-5UTR	ENST00000466177	ENST00000409731		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5UTR-5UTR	ENST00000466177	ENST00000345517		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5UTR-5UTR	ENST00000466177	ENST00000409918		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5UTR-5UTR	ENST00000466177	ENST00000409624		TCGA	RV	BRCA	TCGA-A8-A079-01A	PELI1	chr2	64331835	-	ACTG2	chr2	74128403	+
5UTR-3UTR	ENST00000358912	ENST00000471727		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PELI1	chr2	64371215	-	APLF	chr2	68794473	+
5UTR-3UTR	ENST00000358912	ENST00000303795		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PELI1	chr2	64371215	-	APLF	chr2	68794473	+
5UTR-3UTR	ENST00000466177	ENST00000471727		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PELI1	chr2	64371215	-	APLF	chr2	68794473	+
5UTR-3UTR	ENST00000466177	ENST00000303795		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PELI1	chr2	64371215	-	APLF	chr2	68794473	+
intron-3CDS	ENST00000395782	ENST00000294064		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000395782	ENST00000531509		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000395782	ENST00000544263		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395782	ENST00000529024		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395782	ENST00000532963		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395782	ENST00000531619		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395782	ENST00000545272		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395782	ENST00000526068		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395782	ENST00000534628		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000395783	ENST00000294064		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000395783	ENST00000531509		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000395783	ENST00000544263		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395783	ENST00000529024		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395783	ENST00000532963		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395783	ENST00000531619		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395783	ENST00000545272		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395783	ENST00000526068		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000395783	ENST00000534628		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000435340	ENST00000294064		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000435340	ENST00000531509		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000435340	ENST00000544263		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000435340	ENST00000529024		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000435340	ENST00000532963		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000435340	ENST00000531619		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000435340	ENST00000545272		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000435340	ENST00000526068		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000435340	ENST00000534628		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000255389	ENST00000294064		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000255389	ENST00000531509		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000255389	ENST00000544263		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000255389	ENST00000529024		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000255389	ENST00000532963		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000255389	ENST00000531619		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000255389	ENST00000545272		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000255389	ENST00000526068		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000255389	ENST00000534628		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000395781	ENST00000294064		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000395781	ENST00000531509		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000395781	ENST00000544263		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000395781	ENST00000529024		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000395781	ENST00000532963		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000395781	ENST00000531619		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000395781	ENST00000545272		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000395781	ENST00000526068		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000395781	ENST00000534628		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000484838	ENST00000294064		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000484838	ENST00000531509		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000484838	ENST00000544263		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000484838	ENST00000529024		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000484838	ENST00000532963		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000484838	ENST00000531619		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000484838	ENST00000545272		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000484838	ENST00000526068		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
intron-intron	ENST00000484838	ENST00000534628		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	PEMT	chr17	17494845	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000232375	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000232375	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000232375	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000232375	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000232375	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000232375	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
intron-5UTR	ENST00000536104	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
intron-5UTR	ENST00000536104	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
intron-5UTR	ENST00000536104	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
intron-5UTR	ENST00000536104	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
intron-intron	ENST00000536104	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
intron-intron	ENST00000536104	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000416568	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000416568	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000416568	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000416568	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000416568	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000416568	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000541519	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000541519	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000541519	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000541519	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-intron	ENST00000541519	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-intron	ENST00000541519	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000383734	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000383734	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000383734	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000383734	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000383734	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000383734	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000490115	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000490115	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000490115	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-5UTR	ENST00000490115	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-intron	ENST00000490115	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-intron	ENST00000490115	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000545984	ENST00000444716		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000545984	ENST00000302541		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000545984	ENST00000425621		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-5UTR	ENST00000545984	ENST00000396217		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000545984	ENST00000459828		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5CDS-intron	ENST00000545984	ENST00000539167		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	PFKFB4	chr3	48594114	-	MYRIP	chr3	39942278	+
5UTR-3CDS	ENST00000359337	ENST00000398309		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000359337	ENST00000376104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000359337	ENST00000418306		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000359337	ENST00000280241		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000359337	ENST00000543673		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000376106		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000330014		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000537455		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000524982		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000532653		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000531015		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000359337	ENST00000398301		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000359337	ENST00000426717		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000359337	ENST00000404783		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000359337	ENST00000398304		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000359337	ENST00000530800		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000359337	ENST00000472545		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000449103	ENST00000398309		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000449103	ENST00000376104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000449103	ENST00000418306		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000449103	ENST00000280241		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-3CDS	ENST00000449103	ENST00000543673		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000376106		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000330014		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000537455		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000524982		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000532653		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000531015		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-5UTR	ENST00000449103	ENST00000398301		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000449103	ENST00000426717		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000449103	ENST00000404783		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000449103	ENST00000398304		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000449103	ENST00000530800		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5UTR-intron	ENST00000449103	ENST00000472545		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-3CDS	ENST00000496720	ENST00000398309		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-3CDS	ENST00000496720	ENST00000376104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-3CDS	ENST00000496720	ENST00000418306		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-3CDS	ENST00000496720	ENST00000280241		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-3CDS	ENST00000496720	ENST00000543673		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000376106		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000330014		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000537455		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000524982		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000532653		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000531015		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-5UTR	ENST00000496720	ENST00000398301		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-intron	ENST00000496720	ENST00000426717		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-intron	ENST00000496720	ENST00000404783		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-intron	ENST00000496720	ENST00000398304		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-intron	ENST00000496720	ENST00000530800		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
intron-intron	ENST00000496720	ENST00000472545		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	PLXNB2	chr22	50733148	-	DLG2	chr11	83691685	-
5CDS-3UTR	ENST00000544840	ENST00000525037		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000544840	ENST00000530173		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000544840	ENST00000322157		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000544840	ENST00000544660		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000434554	ENST00000525037		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000434554	ENST00000530173		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000434554	ENST00000322157		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000434554	ENST00000544660		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000225573	ENST00000525037		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000225573	ENST00000530173		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000225573	ENST00000322157		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5CDS-3UTR	ENST00000225573	ENST00000544660		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
intron-3UTR	ENST00000534893	ENST00000525037		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
intron-3UTR	ENST00000534893	ENST00000530173		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
intron-3UTR	ENST00000534893	ENST00000322157		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
intron-3UTR	ENST00000534893	ENST00000544660		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	PNPO	chr17	46020796	+	NPEPPS	chr17	45669322	+
5UTR-3CDS	ENST00000389243	ENST00000603798		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
5UTR-3CDS	ENST00000389243	ENST00000398453		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
5UTR-3CDS	ENST00000389243	ENST00000603864		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
5UTR-5UTR	ENST00000389243	ENST00000605627		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
5UTR-5UTR	ENST00000389243	ENST00000603838		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
5UTR-5UTR	ENST00000389243	ENST00000604188		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000333640	ENST00000603798		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000333640	ENST00000398453		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000333640	ENST00000603864		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000333640	ENST00000605627		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000333640	ENST00000603838		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000333640	ENST00000604188		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000550824	ENST00000603798		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000550824	ENST00000398453		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000550824	ENST00000603864		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000550824	ENST00000605627		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000550824	ENST00000603838		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000550824	ENST00000604188		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000547854	ENST00000603798		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000547854	ENST00000398453		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000547854	ENST00000603864		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000547854	ENST00000605627		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000547854	ENST00000603838		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-5UTR	ENST00000547854	ENST00000604188		TCGA	RV	BRCA	TCGA-LL-A740-01A	POU6F1	chr12	51611426	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000520500	ENST00000339382		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	PPP2CB	chr8	30655097	-	PURG	chr8	30854213	-
intron-intron	ENST00000520500	ENST00000475541		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	PPP2CB	chr8	30655097	-	PURG	chr8	30854213	-
Frame-shit	ENST00000221138	ENST00000339382		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	PPP2CB	chr8	30655097	-	PURG	chr8	30854213	-
5CDS-intron	ENST00000221138	ENST00000475541		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	PPP2CB	chr8	30655097	-	PURG	chr8	30854213	-
intron-3CDS	ENST00000518564	ENST00000339382		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	PPP2CB	chr8	30655097	-	PURG	chr8	30854213	-
intron-intron	ENST00000518564	ENST00000475541		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	PPP2CB	chr8	30655097	-	PURG	chr8	30854213	-
Frame-shit	ENST00000380737	ENST00000306317		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	PPP2R2A	chr8	26212149	+	LGI3	chr8	22009513	-
Frame-shit	ENST00000380737	ENST00000424267		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	PPP2R2A	chr8	26212149	+	LGI3	chr8	22009513	-
Frame-shit	ENST00000315985	ENST00000306317		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	PPP2R2A	chr8	26212149	+	LGI3	chr8	22009513	-
Frame-shit	ENST00000315985	ENST00000424267		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	PPP2R2A	chr8	26212149	+	LGI3	chr8	22009513	-
intron-3CDS	ENST00000523473	ENST00000306317		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	PPP2R2A	chr8	26212149	+	LGI3	chr8	22009513	-
intron-3CDS	ENST00000523473	ENST00000424267		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	PPP2R2A	chr8	26212149	+	LGI3	chr8	22009513	-
3UTR-3CDS	ENST00000413292	ENST00000398645		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
3UTR-3CDS	ENST00000413292	ENST00000529006		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
3UTR-3UTR	ENST00000413292	ENST00000526258		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
3UTR-intron	ENST00000413292	ENST00000308783		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
3UTR-intron	ENST00000413292	ENST00000530342		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
intron-3CDS	ENST00000164133	ENST00000398645		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
intron-3CDS	ENST00000164133	ENST00000529006		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
intron-3UTR	ENST00000164133	ENST00000526258		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
intron-intron	ENST00000164133	ENST00000308783		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
intron-intron	ENST00000164133	ENST00000530342		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685112	+	KDM2A	chr11	66982811	+
In-frame	ENST00000512215	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000512215	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000512215	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000394854	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000394854	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000394854	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000323055	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000323055	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000323055	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000394853	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000394853	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000394853	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
5UTR-3CDS	ENST00000507176	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
5UTR-3CDS	ENST00000507176	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
5UTR-3CDS	ENST00000507176	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000523694	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000523694	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000523694	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
intron-3CDS	ENST00000510292	ENST00000399132		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
intron-3CDS	ENST00000510292	ENST00000399127		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
intron-3CDS	ENST00000510292	ENST00000399126		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	PPP3CA	chr4	102267896	-	COL25A1	chr4	109895715	-
In-frame	ENST00000393203	ENST00000371839		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
In-frame	ENST00000393203	ENST00000371838		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
In-frame	ENST00000393203	ENST00000371836		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
5CDS-intron	ENST00000393203	ENST00000334103		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
5CDS-5UTR	ENST00000393203	ENST00000497451		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000496699	ENST00000371839		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000496699	ENST00000371838		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000496699	ENST00000371836		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
intron-intron	ENST00000496699	ENST00000334103		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
intron-5UTR	ENST00000496699	ENST00000497451		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	PTGFRN	chr1	117492194	+	AGBL4	chr1	50163109	-
Frame-shit	ENST00000370651	ENST00000503581		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
Frame-shit	ENST00000370651	ENST00000370621		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
Frame-shit	ENST00000370651	ENST00000370616		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370651	ENST00000393380		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370651	ENST00000342421		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370651	ENST00000370618		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370651	ENST00000486069		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
Frame-shit	ENST00000370650	ENST00000503581		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
Frame-shit	ENST00000370650	ENST00000370621		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
Frame-shit	ENST00000370650	ENST00000370616		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370650	ENST00000393380		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370650	ENST00000342421		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370650	ENST00000370618		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
5CDS-intron	ENST00000370650	ENST00000486069		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-3CDS	ENST00000578299	ENST00000503581		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-3CDS	ENST00000578299	ENST00000370621		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-3CDS	ENST00000578299	ENST00000370616		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000578299	ENST00000393380		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000578299	ENST00000342421		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000578299	ENST00000370618		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000578299	ENST00000486069		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-3CDS	ENST00000473334	ENST00000503581		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-3CDS	ENST00000473334	ENST00000370621		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-3CDS	ENST00000473334	ENST00000370616		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000473334	ENST00000393380		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000473334	ENST00000342421		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000473334	ENST00000370618		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
intron-intron	ENST00000473334	ENST00000486069		TCGA	RV	BRCA	TCGA-E9-A2JS-01A	PTP4A1	chr6	64286890	+	EYS	chr6	65532715	-
In-frame	ENST00000264710	ENST00000254351		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
In-frame	ENST00000264710	ENST00000381150		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
In-frame	ENST00000264710	ENST00000403076		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
5CDS-5UTR	ENST00000264710	ENST00000482879		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
3UTR-3CDS	ENST00000462003	ENST00000254351		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
3UTR-3CDS	ENST00000462003	ENST00000381150		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
3UTR-3CDS	ENST00000462003	ENST00000403076		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
3UTR-5UTR	ENST00000462003	ENST00000482879		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26350820	+	SDC1	chr2	20405185	-
Frame-shit	ENST00000283195	ENST00000370830		TCGA	RV	BRCA	TCGA-C8-A12U-01A	RANBP2	chr2	109371715	+	BMP5	chr6	55659225	-
Frame-shit	ENST00000283195	ENST00000446683		TCGA	RV	BRCA	TCGA-C8-A12U-01A	RANBP2	chr2	109371715	+	BMP5	chr6	55659225	-
In-frame	ENST00000377604	ENST00000397189		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
In-frame	ENST00000377604	ENST00000218343		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
In-frame	ENST00000329236	ENST00000397189		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
In-frame	ENST00000329236	ENST00000218343		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
In-frame	ENST00000345781	ENST00000397189		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
In-frame	ENST00000345781	ENST00000218343		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
intron-3CDS	ENST00000478410	ENST00000397189		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
intron-3CDS	ENST00000478410	ENST00000218343		TCGA	RV	BRCA	TCGA-D8-A1JB-01A	RBM10	chrX	47028897	+	PHF16	chrX	46857522	+
In-frame	ENST00000286070	ENST00000264093		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
In-frame	ENST00000286070	ENST00000348222		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
5CDS-3UTR	ENST00000286070	ENST00000462685		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
5CDS-3UTR	ENST00000286070	ENST00000356837		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
intron-3CDS	ENST00000464647	ENST00000264093		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
intron-3CDS	ENST00000464647	ENST00000348222		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
intron-3UTR	ENST00000464647	ENST00000462685		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
intron-3UTR	ENST00000464647	ENST00000356837		TCGA	RV	BRCA	TCGA-BH-A1ES-01A	RBM45	chr2	178977573	+	DGUOK	chr2	74173846	+
Frame-shit	ENST00000333942	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000333942	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000333942	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000333942	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
Frame-shit	ENST00000358365	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000358365	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000358365	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000358365	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000583994	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000583994	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000583994	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000583994	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
Frame-shit	ENST00000545287	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000545287	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000545287	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000545287	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000354266	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000354266	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000354266	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000354266	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
Frame-shit	ENST00000394692	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000394692	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000394692	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000394692	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
Frame-shit	ENST00000581094	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000581094	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000581094	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000581094	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-3CDS	ENST00000580976	ENST00000425967		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000397091		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000447712		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000341462		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000532791		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000397113		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000356207		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000335922		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000326324		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-intron	ENST00000580976	ENST00000397103		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000580976	ENST00000397108		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
3UTR-intron	ENST00000580976	ENST00000496629		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RHOT1	chr17	30469748	+	FGFR1	chr8	38315052	-
Frame-shit	ENST00000521654	ENST00000369091		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000521654	ENST00000369096		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000521654	ENST00000369089		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000560949	ENST00000369091		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000560949	ENST00000369096		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000560949	ENST00000369089		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000454842	ENST00000369091		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000454842	ENST00000369096		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000454842	ENST00000369089		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000368414	ENST00000369091		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000368414	ENST00000369096		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000368414	ENST00000369089		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000359704	ENST00000369091		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000359704	ENST00000369096		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000359704	ENST00000369089		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000275184	ENST00000369091		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000275184	ENST00000369096		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000275184	ENST00000369089		TCGA	RV	BRCA	TCGA-A2-A04V-01A	RNF217	chr6	125284572	+	PRDM1	chr6	106552700	+
5CDS-5UTR	ENST00000262135	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000262135	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000262135	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000379925	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000379925	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000379925	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000563746	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000563746	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000563746	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000564374	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000564374	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
5CDS-5UTR	ENST00000564374	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000568009	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000568009	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000568009	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000568653	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000568653	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000568653	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000566096	ENST00000328879		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000566096	ENST00000440659		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
intron-5UTR	ENST00000566096	ENST00000470335		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	RPGRIP1L	chr16	53720345	-	KLHL22	chr22	20843499	-
3UTR-3CDS	ENST00000492220	ENST00000369111		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150416853	+	CA14	chr1	150232546	+
In-frame	ENST00000401000	ENST00000369111		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150416853	+	CA14	chr1	150232546	+
In-frame	ENST00000539519	ENST00000369111		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150416853	+	CA14	chr1	150232546	+
intron-3CDS	ENST00000369067	ENST00000369111		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150416853	+	CA14	chr1	150232546	+
In-frame	ENST00000369068	ENST00000369111		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150416853	+	CA14	chr1	150232546	+
Frame-shit	ENST00000251810	ENST00000407775		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-5UTR	ENST00000251810	ENST00000520492		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000251810	ENST00000517361		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000251810	ENST00000522296		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000251810	ENST00000378472		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
Frame-shit	ENST00000395912	ENST00000407775		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-5UTR	ENST00000395912	ENST00000520492		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000395912	ENST00000517361		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000395912	ENST00000522296		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000395912	ENST00000378472		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-3CDS	ENST00000519317	ENST00000407775		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-5UTR	ENST00000519317	ENST00000520492		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519317	ENST00000517361		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519317	ENST00000522296		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519317	ENST00000378472		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-3CDS	ENST00000519962	ENST00000407775		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-5UTR	ENST00000519962	ENST00000520492		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519962	ENST00000517361		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519962	ENST00000522296		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519962	ENST00000378472		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	RRM2B	chr8	103231042	-	ZFPM2	chr8	106431372	+
Frame-shit	ENST00000330175	ENST00000578681		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000330175	ENST00000583590		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000330175	ENST00000359353		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000330175	ENST00000389924		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000330175	ENST00000457800		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
5CDS-intron	ENST00000330175	ENST00000582985		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000503131	ENST00000578681		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000503131	ENST00000583590		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000503131	ENST00000359353		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000503131	ENST00000389924		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
Frame-shit	ENST00000503131	ENST00000457800		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
5CDS-intron	ENST00000503131	ENST00000582985		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-3CDS	ENST00000503734	ENST00000578681		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-3CDS	ENST00000503734	ENST00000583590		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-3CDS	ENST00000503734	ENST00000359353		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-3CDS	ENST00000503734	ENST00000389924		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-3CDS	ENST00000503734	ENST00000457800		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-intron	ENST00000503734	ENST00000582985		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SAMD14	chr17	48202281	-	DDX42	chr17	61892923	+
intron-3UTR	ENST00000407215	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCRN2	chr17	45915636	-	SKAP1	chr17	46211178	-
intron-intron	ENST00000407215	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCRN2	chr17	45915636	-	SKAP1	chr17	46211178	-
5CDS-3UTR	ENST00000290216	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCRN2	chr17	45915636	-	SKAP1	chr17	46211178	-
5CDS-intron	ENST00000290216	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCRN2	chr17	45915636	-	SKAP1	chr17	46211178	-
5CDS-3UTR	ENST00000584123	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCRN2	chr17	45915636	-	SKAP1	chr17	46211178	-
5CDS-intron	ENST00000584123	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCRN2	chr17	45915636	-	SKAP1	chr17	46211178	-
Frame-shit	ENST00000394681	ENST00000360359		TCGA	RV	BRCA	TCGA-A8-A07U-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35050468	+
5CDS-intron	ENST00000394681	ENST00000535627		TCGA	RV	BRCA	TCGA-A8-A07U-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35050468	+
5CDS-intron	ENST00000394681	ENST00000470698		TCGA	RV	BRCA	TCGA-A8-A07U-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35050468	+
Frame-shit	ENST00000274938	ENST00000360359		TCGA	RV	BRCA	TCGA-A8-A07U-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35050468	+
5CDS-intron	ENST00000274938	ENST00000535627		TCGA	RV	BRCA	TCGA-A8-A07U-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35050468	+
5CDS-intron	ENST00000274938	ENST00000470698		TCGA	RV	BRCA	TCGA-A8-A07U-01A	SCUBE3	chr6	35196516	+	ANKS1A	chr6	35050468	+
5UTR-3CDS	ENST00000428443	ENST00000356140		TCGA	RV	BRCA	TCGA-E2-A15S-01A	SESTD1	chr2	180129226	-	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000428443	ENST00000283054		TCGA	RV	BRCA	TCGA-E2-A15S-01A	SESTD1	chr2	180129226	-	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000428443	ENST00000392928		TCGA	RV	BRCA	TCGA-E2-A15S-01A	SESTD1	chr2	180129226	-	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000486468	ENST00000356140		TCGA	RV	BRCA	TCGA-E2-A15S-01A	SESTD1	chr2	180129226	-	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000486468	ENST00000283054		TCGA	RV	BRCA	TCGA-E2-A15S-01A	SESTD1	chr2	180129226	-	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000486468	ENST00000392928		TCGA	RV	BRCA	TCGA-E2-A15S-01A	SESTD1	chr2	180129226	-	ACMSD	chr2	135655911	+
In-frame	ENST00000383791	ENST00000184956		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
In-frame	ENST00000383791	ENST00000585976		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5CDS-intron	ENST00000383791	ENST00000585712		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000253688	ENST00000184956		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000253688	ENST00000585976		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-intron	ENST00000253688	ENST00000585712		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000426925	ENST00000184956		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000426925	ENST00000585976		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-intron	ENST00000426925	ENST00000585712		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000408919	ENST00000184956		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000408919	ENST00000585976		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-intron	ENST00000408919	ENST00000585712		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000465894	ENST00000184956		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-3CDS	ENST00000465894	ENST00000585976		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5UTR-intron	ENST00000465894	ENST00000585712		TCGA	RV	BRCA	TCGA-A7-A26H-01A	SH3BP5	chr3	15372011	-	HEATR6	chr17	58123590	-
5CDS-5UTR	ENST00000269886	ENST00000344663		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000269886	ENST00000591806		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000269886	ENST00000311401		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000269886	ENST00000415183		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000269886	ENST00000591453		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000598564	ENST00000344663		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000598564	ENST00000591806		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000598564	ENST00000311401		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000598564	ENST00000415183		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000598564	ENST00000591453		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000417295	ENST00000344663		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000417295	ENST00000591806		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000417295	ENST00000311401		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000417295	ENST00000415183		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000417295	ENST00000591453		TCGA	RV	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1356323	+
In-frame	ENST00000328041	ENST00000334005		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
In-frame	ENST00000328041	ENST00000378473		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
In-frame	ENST00000328041	ENST00000278655		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
In-frame	ENST00000328041	ENST00000414679		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
5CDS-3UTR	ENST00000328041	ENST00000492632		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
5CDS-3UTR	ENST00000328041	ENST00000378501		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
5CDS-3UTR	ENST00000328041	ENST00000378493		TCGA	RV	BRCA	TCGA-B6-A0WX-01A	SLC24A3	chr20	19566188	+	PLCB4	chr20	9343543	+
5CDS-intron	ENST00000370112	ENST00000473144		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SLC30A7	chr1	101379362	+	HHIPL2	chr1	222705453	-
5CDS-intron	ENST00000370112	ENST00000343410		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SLC30A7	chr1	101379362	+	HHIPL2	chr1	222705453	-
5CDS-intron	ENST00000357650	ENST00000473144		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SLC30A7	chr1	101379362	+	HHIPL2	chr1	222705453	-
5CDS-intron	ENST00000357650	ENST00000343410		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SLC30A7	chr1	101379362	+	HHIPL2	chr1	222705453	-
Frame-shit	ENST00000417961	ENST00000395841		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000417961	ENST00000371242		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
In-frame	ENST00000417961	ENST00000527947		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000417961	ENST00000395840		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000361573	ENST00000395841		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000361573	ENST00000371242		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
In-frame	ENST00000361573	ENST00000527947		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000361573	ENST00000395840		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000541138	ENST00000395841		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000541138	ENST00000371242		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
In-frame	ENST00000541138	ENST00000527947		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000541138	ENST00000395840		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000539601	ENST00000395841		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000539601	ENST00000371242		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
In-frame	ENST00000539601	ENST00000527947		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
Frame-shit	ENST00000539601	ENST00000395840		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
intron-3CDS	ENST00000490250	ENST00000395841		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
intron-3CDS	ENST00000490250	ENST00000371242		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
intron-3CDS	ENST00000490250	ENST00000527947		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
intron-3CDS	ENST00000490250	ENST00000395840		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	SLC9A8	chr20	48491358	+	RAE1	chr20	55949663	+
In-frame	ENST00000346348	ENST00000368416		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000346348	ENST00000368417		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000346348	ENST00000546092		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000346348	ENST00000545433		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
5CDS-3UTR	ENST00000346348	ENST00000476571		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000314673	ENST00000368416		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000314673	ENST00000368417		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000314673	ENST00000546092		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000314673	ENST00000545433		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
5CDS-3UTR	ENST00000314673	ENST00000476571		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000513865	ENST00000368416		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000513865	ENST00000368417		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000513865	ENST00000546092		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000513865	ENST00000545433		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
5CDS-3UTR	ENST00000513865	ENST00000476571		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000505648	ENST00000368416		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000505648	ENST00000368417		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000505648	ENST00000546092		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000505648	ENST00000545433		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3UTR	ENST00000505648	ENST00000476571		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000508980	ENST00000368416		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000508980	ENST00000368417		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000508980	ENST00000546092		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3CDS	ENST00000508980	ENST00000545433		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
intron-3UTR	ENST00000508980	ENST00000476571		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000369627	ENST00000368416		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000369627	ENST00000368417		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000369627	ENST00000546092		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000369627	ENST00000545433		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
5CDS-3UTR	ENST00000369627	ENST00000476571		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	SNX14	chr6	86303297	-	NKAIN2	chr6	124604151	+
In-frame	ENST00000368147	ENST00000398016		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
In-frame	ENST00000368147	ENST00000359742		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
In-frame	ENST00000368147	ENST00000286445		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
5CDS-intron	ENST00000368147	ENST00000542021		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
intron-3CDS	ENST00000485680	ENST00000398016		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
intron-3CDS	ENST00000485680	ENST00000359742		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
intron-3CDS	ENST00000485680	ENST00000286445		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
intron-intron	ENST00000485680	ENST00000542021		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	SPTA1	chr1	158631077	-	GRIP1	chr12	66923694	-
5CDS-intron	ENST00000286713	ENST00000484427		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	STOM	chr9	124101355	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000286713	ENST00000371764		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	STOM	chr9	124101355	-	DDX27	chr20	47849303	+
intron-intron	ENST00000538954	ENST00000484427		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	STOM	chr9	124101355	-	DDX27	chr20	47849303	+
intron-intron	ENST00000538954	ENST00000371764		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	STOM	chr9	124101355	-	DDX27	chr20	47849303	+
intron-intron	ENST00000347359	ENST00000484427		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	STOM	chr9	124101355	-	DDX27	chr20	47849303	+
intron-intron	ENST00000347359	ENST00000371764		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	STOM	chr9	124101355	-	DDX27	chr20	47849303	+
5UTR-3CDS	ENST00000260128	ENST00000539993		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-3CDS	ENST00000260128	ENST00000518698		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000260128	ENST00000349492		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000260128	ENST00000523686		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000260128	ENST00000348340		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000260128	ENST00000337103		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000260128	ENST00000325233		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-3CDS	ENST00000458141	ENST00000539993		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-3CDS	ENST00000458141	ENST00000518698		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000458141	ENST00000349492		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000458141	ENST00000523686		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000458141	ENST00000348340		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000458141	ENST00000337103		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000458141	ENST00000325233		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-3CDS	ENST00000402687	ENST00000539993		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-3CDS	ENST00000402687	ENST00000518698		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000402687	ENST00000349492		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000402687	ENST00000523686		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000402687	ENST00000348340		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000402687	ENST00000337103		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000402687	ENST00000325233		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-3CDS	ENST00000419716	ENST00000539993		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-3CDS	ENST00000419716	ENST00000518698		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000419716	ENST00000349492		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000419716	ENST00000523686		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000419716	ENST00000348340		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000419716	ENST00000337103		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000419716	ENST00000325233		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-3CDS	ENST00000521946	ENST00000539993		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-3CDS	ENST00000521946	ENST00000518698		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000521946	ENST00000349492		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000521946	ENST00000523686		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000521946	ENST00000348340		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000521946	ENST00000337103		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-intron	ENST00000521946	ENST00000325233		TCGA	RV	BRCA	TCGA-AC-A7VC-01A	SULF1	chr8	70379185	+	C8orf34	chr8	69728121	+
intron-5UTR	ENST00000539805	ENST00000336648		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
intron-5UTR	ENST00000539805	ENST00000399120		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
intron-intron	ENST00000539805	ENST00000482273		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
5UTR-5UTR	ENST00000480436	ENST00000336648		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
5UTR-5UTR	ENST00000480436	ENST00000399120		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
5UTR-intron	ENST00000480436	ENST00000482273		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
5CDS-5UTR	ENST00000337743	ENST00000336648		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
5CDS-5UTR	ENST00000337743	ENST00000399120		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
5CDS-intron	ENST00000337743	ENST00000482273		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
intron-5UTR	ENST00000544472	ENST00000336648		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
intron-5UTR	ENST00000544472	ENST00000399120		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
intron-intron	ENST00000544472	ENST00000482273		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	TASP1	chr20	13539655	-	HLCS	chr21	38334470	-
Frame-shit	ENST00000344749	ENST00000355272		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000344749	ENST00000356926		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000344749	ENST00000350812		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000344749	ENST00000345016		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000344749	ENST00000590683		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000355272		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000356926		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000350812		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000345016		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000262965	ENST00000590683		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000355272		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000356926		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000350812		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000345016		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000453954	ENST00000590683		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000355272		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000356926		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000350812		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000345016		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000395423	ENST00000590683		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000355272		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000356926		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000350812		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000345016		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000588136	ENST00000590683		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5UTR-3CDS	ENST00000381501	ENST00000370357		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	TEC	chr4	48271769	-	PASD1	chrX	150789402	+
intron-3CDS	ENST00000511471	ENST00000370357		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	TEC	chr4	48271769	-	PASD1	chrX	150789402	+
Frame-shit	ENST00000212355	ENST00000334232		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000212355	ENST00000359362		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000370399	ENST00000334232		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000370399	ENST00000359362		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000525962	ENST00000334232		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000525962	ENST00000359362		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
intron-3CDS	ENST00000468996	ENST00000334232		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
intron-3CDS	ENST00000468996	ENST00000359362		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	TGFBR3	chr1	92327028	-	EDARADD	chr1	236572516	+
In-frame	ENST00000292894	ENST00000388999		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
In-frame	ENST00000292894	ENST00000401500		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
In-frame	ENST00000292894	ENST00000270301		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
5CDS-3UTR	ENST00000292894	ENST00000378860		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
5UTR-3CDS	ENST00000538849	ENST00000388999		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
5UTR-3CDS	ENST00000538849	ENST00000401500		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
5UTR-3CDS	ENST00000538849	ENST00000270301		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
5UTR-3UTR	ENST00000538849	ENST00000378860		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
intron-3CDS	ENST00000524106	ENST00000388999		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
intron-3CDS	ENST00000524106	ENST00000401500		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
intron-3CDS	ENST00000524106	ENST00000270301		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
intron-3UTR	ENST00000524106	ENST00000378860		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	THAP8	chr19	36545037	-	WDR62	chr19	36549682	+
intron-3CDS	ENST00000398022	ENST00000340513		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TM9SF4	chr20	30697842	+	TPX2	chr20	30354359	+
intron-3CDS	ENST00000398022	ENST00000300403		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TM9SF4	chr20	30697842	+	TPX2	chr20	30354359	+
5UTR-3CDS	ENST00000217315	ENST00000340513		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TM9SF4	chr20	30697842	+	TPX2	chr20	30354359	+
5UTR-3CDS	ENST00000217315	ENST00000300403		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	TM9SF4	chr20	30697842	+	TPX2	chr20	30354359	+
5CDS-intron	ENST00000434316	ENST00000592005		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000434316	ENST00000245121		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000434316	ENST00000356157		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000375391	ENST00000592005		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000375391	ENST00000245121		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000375391	ENST00000356157		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000474393	ENST00000592005		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000474393	ENST00000245121		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000474393	ENST00000356157		TCGA	RV	BRCA	TCGA-C8-A130-01A	TMCO3	chr13	114193822	+	KATNAL2	chr18	44572828	+
Frame-shit	ENST00000283206	ENST00000295408		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112785928	+
In-frame	ENST00000283206	ENST00000421804		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112785928	+
Frame-shit	ENST00000283206	ENST00000409780		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112785928	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112785928	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112785928	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112785928	+
In-frame	ENST00000398559	ENST00000398540		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000398559	ENST00000542259		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000398559	ENST00000497757		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000398559	ENST00000478263		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000543976	ENST00000398540		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000543976	ENST00000542259		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000543976	ENST00000497757		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000543976	ENST00000478263		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5UTR-3CDS	ENST00000489370	ENST00000398540		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5UTR-3CDS	ENST00000489370	ENST00000542259		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5UTR-intron	ENST00000489370	ENST00000497757		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5UTR-intron	ENST00000489370	ENST00000478263		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69075147	-	FRMD4B	chr3	69362668	-
5CDS-5UTR	ENST00000393245	ENST00000487990		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000399272		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000489903		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000313806		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000443408		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000482533		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000481448		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000381132		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000381135		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000393245	ENST00000492600		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000487990		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000399272		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000489903		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000313806		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000443408		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000482533		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000481448		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000381132		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000381135		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000265388	ENST00000492600		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000487990		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000399272		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000489903		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000313806		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000443408		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000482533		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000481448		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000381132		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000381135		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000482320	ENST00000492600		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000487990		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000399272		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000489903		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000313806		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000443408		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000482533		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000481448		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000381132		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000381135		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471234	ENST00000492600		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000487990		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000399272		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000489903		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000313806		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000443408		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000482533		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000481448		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000381132		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000381135		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000471166	ENST00000492600		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	TNPO3	chr7	128614922	-	RCAN1	chr21	35896008	-
In-frame	ENST00000405636	ENST00000252485		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000405636	ENST00000252483		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000252487	ENST00000252485		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000252487	ENST00000252483		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000592434	ENST00000252485		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000592434	ENST00000252483		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000426677	ENST00000252485		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
In-frame	ENST00000426677	ENST00000252483		TCGA	RV	BRCA	TCGA-AO-A129-01A	TOMM40	chr19	45394946	+	PVRL2	chr19	45375110	+
Frame-shit	ENST00000355540	ENST00000265717		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TRRAP	chr7	98515302	+	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000355540	ENST00000393613		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TRRAP	chr7	98515302	+	PRKAR2B	chr7	106762397	+
Frame-shit	ENST00000359863	ENST00000265717		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TRRAP	chr7	98515302	+	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000359863	ENST00000393613		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TRRAP	chr7	98515302	+	PRKAR2B	chr7	106762397	+
Frame-shit	ENST00000446306	ENST00000265717		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TRRAP	chr7	98515302	+	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000446306	ENST00000393613		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TRRAP	chr7	98515302	+	PRKAR2B	chr7	106762397	+
5CDS-intron	ENST00000261647	ENST00000581396		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000379504		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000318094		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000395739		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000535933		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000540946		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000542206		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000478943		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000261647	ENST00000577517		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000581396		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000379504		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000318094		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000395739		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000535933		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000540946		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000542206		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000478943		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
5CDS-intron	ENST00000486880	ENST00000577517		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000581396		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000379504		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000318094		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000395739		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000535933		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000540946		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000542206		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000478943		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
3UTR-intron	ENST00000497842	ENST00000577517		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	TTC19	chr17	15930016	+	TOM1L2	chr17	17797124	-
In-frame	ENST00000449054	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5CDS-intron	ENST00000449054	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
In-frame	ENST00000379238	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5CDS-intron	ENST00000379238	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
Frame-shit	ENST00000360802	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5CDS-intron	ENST00000360802	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-3CDS	ENST00000379239	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-intron	ENST00000379239	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5UTR-3CDS	ENST00000539807	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5UTR-intron	ENST00000539807	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
Frame-shit	ENST00000418786	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5CDS-intron	ENST00000418786	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-3CDS	ENST00000379225	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-intron	ENST00000379225	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-3CDS	ENST00000379235	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-intron	ENST00000379235	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5UTR-3CDS	ENST00000480885	ENST00000398571		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
5UTR-intron	ENST00000480885	ENST00000472689		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	UBAP2	chr9	34017048	-	USP34	chr2	61512092	-
intron-3CDS	ENST00000377227	ENST00000281171		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377227	ENST00000348962		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377227	ENST00000542557		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377227	ENST00000544244		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377227	ENST00000445537		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377227	ENST00000442921		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000377227	ENST00000543886		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000377227	ENST00000544706		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377219	ENST00000281171		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377219	ENST00000348962		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377219	ENST00000542557		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377219	ENST00000544244		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377219	ENST00000445537		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000377219	ENST00000442921		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000377219	ENST00000543886		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000377219	ENST00000544706		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-3CDS	ENST00000506128	ENST00000281171		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-3CDS	ENST00000506128	ENST00000348962		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-3CDS	ENST00000506128	ENST00000542557		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-3CDS	ENST00000506128	ENST00000544244		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-3CDS	ENST00000506128	ENST00000445537		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-3CDS	ENST00000506128	ENST00000442921		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-intron	ENST00000506128	ENST00000543886		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
5UTR-intron	ENST00000506128	ENST00000544706		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000511320	ENST00000281171		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000511320	ENST00000348962		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000511320	ENST00000542557		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000511320	ENST00000544244		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000511320	ENST00000445537		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000511320	ENST00000442921		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000511320	ENST00000543886		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000511320	ENST00000544706		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000503273	ENST00000281171		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000503273	ENST00000348962		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000503273	ENST00000542557		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000503273	ENST00000544244		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000503273	ENST00000445537		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-3CDS	ENST00000503273	ENST00000442921		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000503273	ENST00000543886		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
intron-intron	ENST00000503273	ENST00000544706		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	UIMC1	chr5	176433540	-	PTPRO	chr12	15710389	+
In-frame	ENST00000306177	ENST00000374228		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	USP42	chr7	6155154	+	SLC46A2	chr9	115649693	-
In-frame	ENST00000475243	ENST00000504376		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
In-frame	ENST00000475243	ENST00000382254		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
In-frame	ENST00000475243	ENST00000522262		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
5CDS-5UTR	ENST00000475243	ENST00000521384		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-3CDS	ENST00000395802	ENST00000504376		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-3CDS	ENST00000395802	ENST00000382254		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-3CDS	ENST00000395802	ENST00000522262		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-5UTR	ENST00000395802	ENST00000521384		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-3CDS	ENST00000265619	ENST00000504376		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-3CDS	ENST00000265619	ENST00000382254		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-3CDS	ENST00000265619	ENST00000522262		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
intron-5UTR	ENST00000265619	ENST00000521384		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	VAPB	chr20	57009761	+	CDH12	chr5	21802529	-
5CDS-intron	ENST00000317025	ENST00000521746		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-intron	ENST00000317025	ENST00000420274		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-3UTR	ENST00000317025	ENST00000388745		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-intron	ENST00000433384	ENST00000521746		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-intron	ENST00000433384	ENST00000420274		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-3UTR	ENST00000433384	ENST00000388745		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-intron	ENST00000527502	ENST00000521746		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-intron	ENST00000527502	ENST00000420274		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
5CDS-3UTR	ENST00000527502	ENST00000388745		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
intron-intron	ENST00000316985	ENST00000521746		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
intron-intron	ENST00000316985	ENST00000420274		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
intron-3UTR	ENST00000316985	ENST00000388745		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
intron-intron	ENST00000525081	ENST00000521746		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
intron-intron	ENST00000525081	ENST00000420274		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
intron-3UTR	ENST00000525081	ENST00000388745		TCGA	RV	BRCA	TCGA-OL-A66J-01A	WHSC1L1	chr8	38146005	-	PLEKHA2	chr8	38826939	+
Frame-shit	ENST00000339464	ENST00000261349		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
Frame-shit	ENST00000339464	ENST00000543091		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
5CDS-intron	ENST00000339464	ENST00000540415		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
intron-3CDS	ENST00000409496	ENST00000261349		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
intron-3CDS	ENST00000409496	ENST00000543091		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
intron-intron	ENST00000409496	ENST00000540415		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
intron-3CDS	ENST00000410089	ENST00000261349		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
intron-3CDS	ENST00000410089	ENST00000543091		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
intron-intron	ENST00000410089	ENST00000540415		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
Frame-shit	ENST00000410058	ENST00000261349		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
Frame-shit	ENST00000410058	ENST00000543091		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
5CDS-intron	ENST00000410058	ENST00000540415		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	WNT7B	chr22	46372564	-	LRP6	chr12	12334373	-
In-frame	ENST00000264951	ENST00000376573		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-5UTR	ENST00000264951	ENST00000545335		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-intron	ENST00000264951	ENST00000323883		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-intron	ENST00000264951	ENST00000422321		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
In-frame	ENST00000392981	ENST00000376573		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-5UTR	ENST00000392981	ENST00000545335		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-intron	ENST00000392981	ENST00000323883		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-intron	ENST00000392981	ENST00000422321		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
In-frame	ENST00000463916	ENST00000376573		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-5UTR	ENST00000463916	ENST00000545335		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-intron	ENST00000463916	ENST00000323883		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5CDS-intron	ENST00000463916	ENST00000422321		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-3CDS	ENST00000544157	ENST00000376573		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-5UTR	ENST00000544157	ENST00000545335		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000544157	ENST00000323883		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000544157	ENST00000422321		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-3CDS	ENST00000465074	ENST00000376573		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-5UTR	ENST00000465074	ENST00000545335		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000465074	ENST00000323883		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000465074	ENST00000422321		TCGA	RV	BRCA	TCGA-A8-A07C-01A	XRN1	chr3	142166712	-	PIP4K2A	chr10	22898646	-
Frame-shit	ENST00000207870	ENST00000264741		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
5CDS-intron	ENST00000207870	ENST00000422441		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
5UTR-3CDS	ENST00000542835	ENST00000264741		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
5UTR-intron	ENST00000542835	ENST00000422441		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
Frame-shit	ENST00000427323	ENST00000264741		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
5CDS-intron	ENST00000427323	ENST00000422441		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
intron-3CDS	ENST00000472721	ENST00000264741		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
intron-intron	ENST00000472721	ENST00000422441		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	XYLB	chr3	38390123	+	ITGA9	chr3	37695205	+
5CDS-5UTR	ENST00000327791	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000327791	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000327791	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000327791	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000327791	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000442791	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000442791	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000442791	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000442791	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000442791	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000534854	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000534854	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000534854	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000534854	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000534854	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
intron-5UTR	ENST00000380790	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
intron-5UTR	ENST00000380790	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
intron-5UTR	ENST00000380790	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
intron-intron	ENST00000380790	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
intron-intron	ENST00000380790	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000380788	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000380788	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000380788	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000380788	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000380788	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5UTR-5UTR	ENST00000541702	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5UTR-5UTR	ENST00000541702	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5UTR-5UTR	ENST00000541702	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5UTR-intron	ENST00000541702	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5UTR-intron	ENST00000541702	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000555248	ENST00000393240		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000555248	ENST00000261205		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000555248	ENST00000457153		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000555248	ENST00000552744		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
5CDS-intron	ENST00000555248	ENST00000549454		TCGA	RV	BRCA	TCGA-AR-A2LN-01A	YAF2	chr12	42631401	-	SYT1	chr12	79258778	+
3UTR-3CDS	ENST00000581865	ENST00000360943		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	UBE2Z	chr17	46988170	+
5UTR-3CDS	ENST00000312655	ENST00000360943		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	UBE2Z	chr17	46988170	+
intron-3CDS	ENST00000585166	ENST00000360943		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	UBE2Z	chr17	46988170	+
5UTR-3CDS	ENST00000324306	ENST00000378685		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000324306	ENST00000464832		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000324306	ENST00000487361		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000324306	ENST00000297788		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-intron	ENST00000324306	ENST00000471729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000426572	ENST00000378685		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000426572	ENST00000464832		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000426572	ENST00000487361		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000426572	ENST00000297788		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-intron	ENST00000426572	ENST00000471729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000535170	ENST00000378685		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000535170	ENST00000464832		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000535170	ENST00000487361		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-3CDS	ENST00000535170	ENST00000297788		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
5UTR-intron	ENST00000535170	ENST00000471729		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	ZKSCAN1	chr7	99613349	+	CCDC136	chr7	128444704	+
intron-3CDS	ENST00000513929	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
intron-3CDS	ENST00000513929	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
intron-3CDS	ENST00000513929	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
intron-3CDS	ENST00000513929	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
intron-3CDS	ENST00000513929	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000253144	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000253144	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000253144	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000253144	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000253144	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511593	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511593	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511593	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511593	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511593	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000449416	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000449416	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000449416	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000449416	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000449416	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000411977	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000411977	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000411977	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000411977	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000411977	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511154	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511154	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511154	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511154	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000511154	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513999	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513999	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513999	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513999	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513999	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000512387	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000512387	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000512387	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000512387	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000512387	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513265	ENST00000589824		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513265	ENST00000592953		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513265	ENST00000589093		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513265	ENST00000360133		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000513265	ENST00000443188		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZNF331	chr19	54074984	+	NLRP11	chr19	56313105	-
Frame-shit	ENST00000370706	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000370706	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000370706	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000370706	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000357489	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000357489	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000357489	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000357489	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000491832	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000491832	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000491832	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000491832	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000370708	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370708	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370708	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370708	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000370702	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370702	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370702	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370702	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000370710	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370710	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370710	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370710	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000510989	ENST00000319023		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000510989	ENST00000539574		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000510989	ENST00000530055		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000510989	ENST00000526039		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56999668	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000335325	ENST00000358791		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000335325	ENST00000262591		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000335325	ENST00000371608		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000335325	ENST00000609336		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000335325	ENST00000485049		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000320619	ENST00000358791		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000320619	ENST00000262591		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000320619	ENST00000371608		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000320619	ENST00000609336		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000320619	ENST00000485049		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000566250	ENST00000358791		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000566250	ENST00000262591		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000566250	ENST00000371608		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000566250	ENST00000609336		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000566250	ENST00000485049		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000567962	ENST00000358791		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000567962	ENST00000262591		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000567962	ENST00000371608		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000567962	ENST00000609336		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000567962	ENST00000485049		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
intron-3CDS	ENST00000564320	ENST00000358791		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
intron-3CDS	ENST00000564320	ENST00000262591		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
intron-3CDS	ENST00000564320	ENST00000371608		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
intron-3CDS	ENST00000564320	ENST00000609336		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
intron-3UTR	ENST00000564320	ENST00000485049		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	ZNRF1	chr16	75033993	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000353139	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
Frame-shit	ENST00000353139	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
Frame-shit	ENST00000360679	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
Frame-shit	ENST00000360679	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
In-frame	ENST00000394406	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
In-frame	ENST00000394406	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
In-frame	ENST00000335166	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
In-frame	ENST00000335166	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000416895	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000416895	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
Frame-shit	ENST00000361253	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
Frame-shit	ENST00000361253	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000588142	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000588142	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000589665	ENST00000424789		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000589665	ENST00000389520		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35454765	-	TANC2	chr17	61345109	+
5CDS-5UTR	ENST00000532485	ENST00000397002		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-5UTR	ENST00000532485	ENST00000561028		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-5UTR	ENST00000532485	ENST00000396997		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-intron	ENST00000532485	ENST00000560550		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-intron	ENST00000532485	ENST00000396995		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
3UTR-5UTR	ENST00000530182	ENST00000397002		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
3UTR-5UTR	ENST00000530182	ENST00000561028		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
3UTR-5UTR	ENST00000530182	ENST00000396997		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
3UTR-intron	ENST00000530182	ENST00000560550		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
3UTR-intron	ENST00000530182	ENST00000396995		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-5UTR	ENST00000526597	ENST00000397002		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-5UTR	ENST00000526597	ENST00000561028		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-5UTR	ENST00000526597	ENST00000396997		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-intron	ENST00000526597	ENST00000560550		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-intron	ENST00000526597	ENST00000396995		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-5UTR	ENST00000533873	ENST00000397002		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-5UTR	ENST00000533873	ENST00000561028		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-5UTR	ENST00000533873	ENST00000396997		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-intron	ENST00000533873	ENST00000560550		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5CDS-intron	ENST00000533873	ENST00000396995		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5UTR-5UTR	ENST00000538157	ENST00000397002		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5UTR-5UTR	ENST00000538157	ENST00000561028		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5UTR-5UTR	ENST00000538157	ENST00000396997		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5UTR-intron	ENST00000538157	ENST00000560550		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
5UTR-intron	ENST00000538157	ENST00000396995		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-5UTR	ENST00000544113	ENST00000397002		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-5UTR	ENST00000544113	ENST00000561028		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-5UTR	ENST00000544113	ENST00000396997		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-intron	ENST00000544113	ENST00000560550		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
intron-intron	ENST00000544113	ENST00000396995		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24552084	-
Frame-shit	ENST00000608083	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000608083	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000608083	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000608083	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377855	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000377855	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377855	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377855	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000545482	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000545482	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000545482	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000545482	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000361521	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000361521	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000361521	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000361521	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377842	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000377842	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377842	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377842	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377845	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000377845	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377845	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000377845	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000541130	ENST00000377658		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000541130	ENST00000377663		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000541130	ENST00000467612		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
Frame-shit	ENST00000541130	ENST00000463043		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	ACOT7	chr1	6378552	-	KLHL21	chr1	6655617	-
In-frame	ENST00000396029	ENST00000357552		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
In-frame	ENST00000396029	ENST00000371001		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
5CDS-intron	ENST00000396029	ENST00000476314		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
Frame-shit	ENST00000396032	ENST00000357552		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
Frame-shit	ENST00000396032	ENST00000371001		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
5CDS-intron	ENST00000396032	ENST00000476314		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
In-frame	ENST00000371602	ENST00000357552		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
In-frame	ENST00000371602	ENST00000371001		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
5CDS-intron	ENST00000371602	ENST00000476314		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
Frame-shit	ENST00000349014	ENST00000357552		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
Frame-shit	ENST00000349014	ENST00000371001		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
5CDS-intron	ENST00000349014	ENST00000476314		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49518554	-	SYCP2	chr20	58468648	-
5CDS-5UTR	ENST00000308595	ENST00000529704		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000308595	ENST00000312419		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000308595	ENST00000539074		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000526285	ENST00000529704		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000526285	ENST00000312419		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000526285	ENST00000539074		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
intron-5UTR	ENST00000527176	ENST00000529704		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
intron-5UTR	ENST00000527176	ENST00000312419		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
intron-5UTR	ENST00000527176	ENST00000539074		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ADRBK1	chr11	67034283	+	POLD4	chr11	67120548	-
In-frame	ENST00000369799	ENST00000357640		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
In-frame	ENST00000369799	ENST00000369752		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
5CDS-intron	ENST00000369799	ENST00000473682		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
3UTR-3CDS	ENST00000475081	ENST00000357640		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
3UTR-3CDS	ENST00000475081	ENST00000369752		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
3UTR-intron	ENST00000475081	ENST00000473682		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
intron-3CDS	ENST00000359172	ENST00000357640		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
intron-3CDS	ENST00000359172	ENST00000369752		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
intron-intron	ENST00000359172	ENST00000473682		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
intron-3CDS	ENST00000393614	ENST00000357640		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
intron-3CDS	ENST00000393614	ENST00000369752		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
intron-intron	ENST00000393614	ENST00000473682		TCGA	RV	BRCA	TCGA-E9-A5FK-01A	AHCYL1	chr1	110527794	+	DENND2D	chr1	111737348	-
5CDS-intron	ENST00000367800	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000367800	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000367800	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000367800	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000367800	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000367800	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000367800	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000367800	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000367800	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000367800	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000367800	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000367800	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000457866	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000457866	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000457866	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000457866	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000457866	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000457866	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000457866	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000457866	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000457866	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000457866	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000457866	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000457866	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000417892	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000417892	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000417892	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000417892	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000417892	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000417892	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000417892	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000417892	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000417892	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-5UTR	ENST00000417892	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000417892	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
5CDS-intron	ENST00000417892	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000327035	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000327035	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000327035	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000327035	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000327035	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000327035	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000327035	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000327035	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000327035	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000327035	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000327035	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000327035	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000488690	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000488690	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000488690	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000488690	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000488690	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000488690	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000488690	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000488690	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000488690	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000488690	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000488690	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000488690	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000367798	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000367798	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000367798	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000367798	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000367798	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000367798	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000367798	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000367798	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000367798	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000367798	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000367798	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000367798	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000528103	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000528103	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000528103	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000528103	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000528103	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000528103	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000528103	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000528103	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000528103	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000528103	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000528103	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000528103	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000534469	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000534469	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000534469	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000534469	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000534469	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000534469	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000534469	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000534469	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000534469	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000534469	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000534469	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000534469	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000531527	ENST00000382565		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000531527	ENST00000382578		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000531527	ENST00000382566		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000531527	ENST00000348295		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000531527	ENST00000544772		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000531527	ENST00000404276		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000531527	ENST00000328354		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000531527	ENST00000405598		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000531527	ENST00000382580		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-5UTR	ENST00000531527	ENST00000402731		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000531527	ENST00000403642		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
intron-intron	ENST00000531527	ENST00000464581		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	AHI1	chr6	135644300	-	CHEK2	chr22	29121355	-
Frame-shit	ENST00000370205	ENST00000369948		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	ALG14	chr1	95492685	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000370205	ENST00000369949		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	ALG14	chr1	95492685	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000370205	ENST00000369945		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	ALG14	chr1	95492685	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000495856	ENST00000369948		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	ALG14	chr1	95492685	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000495856	ENST00000369949		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	ALG14	chr1	95492685	-	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000495856	ENST00000369945		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	ALG14	chr1	95492685	-	C1orf194	chr1	109649281	-
5CDS-5UTR	ENST00000355303	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5CDS-5UTR	ENST00000355303	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5CDS-5UTR	ENST00000355303	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5UTR-5UTR	ENST00000398543	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5UTR-5UTR	ENST00000398543	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5UTR-5UTR	ENST00000398543	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5CDS-5UTR	ENST00000538023	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5CDS-5UTR	ENST00000538023	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5CDS-5UTR	ENST00000538023	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000316296	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000316296	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000316296	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000530676	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000530676	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000530676	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000531349	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000531349	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000531349	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000525494	ENST00000532378		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000525494	ENST00000334636		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
intron-5UTR	ENST00000525494	ENST00000526489		TCGA	RV	BRCA	TCGA-A8-A097-01A	ANO1	chr11	69924820	+	CYP2R1	chr11	14907463	-
5CDS-5UTR	ENST00000288266	ENST00000334325		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	APPL1	chr3	57287766	+	SPATA12	chr3	57107394	+
Frame-shit	ENST00000396432	ENST00000215906		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ARHGAP21	chr10	24883879	-	ASPHD2	chr22	26838425	+
Frame-shit	ENST00000320481	ENST00000215906		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ARHGAP21	chr10	24883879	-	ASPHD2	chr22	26838425	+
intron-3CDS	ENST00000493154	ENST00000215906		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ARHGAP21	chr10	24883879	-	ASPHD2	chr22	26838425	+
Frame-shit	ENST00000323116	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	ATP11B	chr3	182538164	+	MED10	chr5	6372714	-
Frame-shit	ENST00000493826	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	ATP11B	chr3	182538164	+	MED10	chr5	6372714	-
intron-3CDS	ENST00000482794	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	ATP11B	chr3	182538164	+	MED10	chr5	6372714	-
In-frame	ENST00000589718	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000589718	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
In-frame	ENST00000586576	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000586576	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
intron-3CDS	ENST00000484949	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
intron-intron	ENST00000484949	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
In-frame	ENST00000308721	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000308721	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
In-frame	ENST00000396367	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000396367	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
In-frame	ENST00000266434	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000266434	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
In-frame	ENST00000396369	ENST00000396373		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000396369	ENST00000544715		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	BCL2L14	chr12	12232672	+	ETV6	chr12	11992074	+
5CDS-intron	ENST00000307404	ENST00000438911		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000307404	ENST00000530374		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000307404	ENST00000403000		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000307404	ENST00000424149		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000307404	ENST00000306145		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000529231	ENST00000438911		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000529231	ENST00000530374		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000529231	ENST00000403000		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000529231	ENST00000424149		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000529231	ENST00000306145		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
intron-intron	ENST00000525016	ENST00000438911		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
intron-intron	ENST00000525016	ENST00000530374		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
intron-5UTR	ENST00000525016	ENST00000403000		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
intron-5UTR	ENST00000525016	ENST00000424149		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
intron-5UTR	ENST00000525016	ENST00000306145		TCGA	RV	BRCA	TCGA-BH-A0E0-01A	BOP1	chr8	145512776	-	CYHR1	chr8	145690479	-
3UTR-intron	ENST00000527422	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000527422	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-intron	ENST00000356386	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000356386	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-intron	ENST00000396934	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000396934	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-intron	ENST00000377708	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000377708	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-intron	ENST00000396948	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000396948	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
intron-intron	ENST00000532994	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
intron-3UTR	ENST00000532994	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-intron	ENST00000508906	ENST00000377791		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000508906	ENST00000602637		TCGA	RV	BRCA	TCGA-E2-A109-01A	BTN3A2	chr6	26375026	+	HIST1H2AC	chr6	26138282	+
In-frame	ENST00000448841	ENST00000251582		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WBP1L	chr10	104503900	+	ADAMTS2	chr5	178700065	-
In-frame	ENST00000448841	ENST00000274609		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WBP1L	chr10	104503900	+	ADAMTS2	chr5	178700065	-
intron-3CDS	ENST00000369889	ENST00000251582		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WBP1L	chr10	104503900	+	ADAMTS2	chr5	178700065	-
intron-3CDS	ENST00000369889	ENST00000274609		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WBP1L	chr10	104503900	+	ADAMTS2	chr5	178700065	-
In-frame	ENST00000448841	ENST00000260746		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	WBP1L	chr10	104503900	+	ARL3	chr10	104465246	-
intron-3CDS	ENST00000369889	ENST00000260746		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	WBP1L	chr10	104503900	+	ARL3	chr10	104465246	-
intron-3CDS	ENST00000533988	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000533988	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000533988	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000533988	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000533988	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000533988	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-intron	ENST00000533988	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000524490	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000524490	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000524490	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000524490	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000524490	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000524490	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-intron	ENST00000524490	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000334736	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000334736	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000334736	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000334736	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000334736	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000334736	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000334736	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000343878	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000343878	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000343878	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000343878	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000343878	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000343878	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000343878	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000525959	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000525959	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000525959	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000525959	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000525959	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-3CDS	ENST00000525959	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
intron-intron	ENST00000525959	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000533248	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000533248	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000533248	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000533248	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000533248	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000533248	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000533248	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525919	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525919	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525919	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525919	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525919	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525919	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000525919	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000524767	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000524767	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000524767	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000524767	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000524767	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000524767	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000524767	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525038	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525038	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525038	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525038	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525038	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000525038	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000525038	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000529032	ENST00000242067		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000529032	ENST00000355070		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000529032	ENST00000350941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000529032	ENST00000354265		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000529032	ENST00000396127		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000529032	ENST00000425508		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
5CDS-intron	ENST00000529032	ENST00000482941		TCGA	RV	BRCA	TCGA-A8-A091-01A	C11orf30	chr11	76207513	+	BBS9	chr7	33195250	+
Frame-shit	ENST00000420986	ENST00000280346		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000420986	ENST00000393051		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000420986	ENST00000537636		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
5UTR-3CDS	ENST00000532163	ENST00000280346		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
5UTR-3CDS	ENST00000532163	ENST00000393051		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
5UTR-3CDS	ENST00000532163	ENST00000537636		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000280352	ENST00000280346		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000280352	ENST00000393051		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000280352	ENST00000537636		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000530104	ENST00000280346		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000530104	ENST00000393051		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000530104	ENST00000537636		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000393047	ENST00000280346		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000393047	ENST00000393051		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
Frame-shit	ENST00000393047	ENST00000537636		TCGA	RV	BRCA	TCGA-A7-A4SA-01A	C11orf57	chr11	111946367	+	DLAT	chr11	111930627	+
5UTR-3CDS	ENST00000158149	ENST00000381769		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
5UTR-3CDS	ENST00000158149	ENST00000348335		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
5UTR-3CDS	ENST00000158149	ENST00000381771		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
5UTR-3CDS	ENST00000158149	ENST00000158166		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
Frame-shit	ENST00000389005	ENST00000381769		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
Frame-shit	ENST00000389005	ENST00000348335		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
Frame-shit	ENST00000389005	ENST00000381771		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
Frame-shit	ENST00000389005	ENST00000158166		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
intron-3CDS	ENST00000577169	ENST00000381769		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
intron-3CDS	ENST00000577169	ENST00000348335		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
intron-3CDS	ENST00000577169	ENST00000381771		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
intron-3CDS	ENST00000577169	ENST00000158166		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	C17orf85	chr17	3746380	-	CAMKK1	chr17	3783728	-
5CDS-3UTR	ENST00000276704	ENST00000519049		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	C8orf76	chr8	124238740	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000276704	ENST00000523211		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	C8orf76	chr8	124238740	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000276704	ENST00000328472		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	C8orf76	chr8	124238740	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000521310	ENST00000519049		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	C8orf76	chr8	124238740	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000521310	ENST00000523211		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	C8orf76	chr8	124238740	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000521310	ENST00000328472		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	C8orf76	chr8	124238740	-	NKAIN3	chr8	63492098	+
Frame-shit	ENST00000394672	ENST00000490882		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000429972		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000295956		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000358537		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000357272		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000348383		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000493452		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000394672	ENST00000419752		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
5CDS-intron	ENST00000394672	ENST00000484981		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000490882		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000429972		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000295956		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000358537		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000357272		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000348383		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000493452		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000326595	ENST00000419752		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
5CDS-intron	ENST00000326595	ENST00000484981		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000490882		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000429972		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000295956		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000358537		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000357272		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000348383		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000493452		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
Frame-shit	ENST00000436465	ENST00000419752		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
5CDS-intron	ENST00000436465	ENST00000484981		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000490882		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000429972		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000295956		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000358537		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000357272		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000348383		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000493452		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000442522	ENST00000419752		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-intron	ENST00000442522	ENST00000484981		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000490882		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000429972		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000295956		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000358537		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000357272		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000348383		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000493452		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-3CDS	ENST00000538560	ENST00000419752		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
intron-intron	ENST00000538560	ENST00000484981		TCGA	RV	BRCA	TCGA-GM-A3NY-01A	CCDC66	chr3	56628056	+	FLNB	chr3	58087930	+
5UTR-3CDS	ENST00000318443	ENST00000261888		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-intron	ENST00000318443	ENST00000444347		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-5UTR	ENST00000318443	ENST00000558873		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-3CDS	ENST00000537340	ENST00000261888		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-intron	ENST00000537340	ENST00000444347		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-5UTR	ENST00000537340	ENST00000558873		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-3CDS	ENST00000318424	ENST00000261888		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-intron	ENST00000318424	ENST00000444347		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-5UTR	ENST00000318424	ENST00000558873		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-3CDS	ENST00000561213	ENST00000261888		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-intron	ENST00000561213	ENST00000444347		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
5UTR-5UTR	ENST00000561213	ENST00000558873		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
intron-3CDS	ENST00000564751	ENST00000261888		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
intron-intron	ENST00000564751	ENST00000444347		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
intron-5UTR	ENST00000564751	ENST00000558873		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	CD276	chr15	73976801	+	PARP16	chr15	65563410	-
In-frame	ENST00000066544	ENST00000300896		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000066544	ENST00000592339		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000066544	ENST00000393003		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-5UTR	ENST00000066544	ENST00000586881		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
In-frame	ENST00000531206	ENST00000300896		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000531206	ENST00000592339		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000531206	ENST00000393003		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-5UTR	ENST00000531206	ENST00000586881		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
Frame-shit	ENST00000446365	ENST00000300896		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000446365	ENST00000592339		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000446365	ENST00000393003		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-5UTR	ENST00000446365	ENST00000586881		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
In-frame	ENST00000527547	ENST00000300896		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000527547	ENST00000592339		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-intron	ENST00000527547	ENST00000393003		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5CDS-5UTR	ENST00000527547	ENST00000586881		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5UTR-3CDS	ENST00000528748	ENST00000300896		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5UTR-intron	ENST00000528748	ENST00000592339		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5UTR-intron	ENST00000528748	ENST00000393003		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
5UTR-5UTR	ENST00000528748	ENST00000586881		TCGA	RV	BRCA	TCGA-E9-A228-01A	CDC27	chr17	45234596	-	USP32	chr17	58379065	-
In-frame	ENST00000366767	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000366767	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
In-frame	ENST00000366769	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000366769	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
In-frame	ENST00000366764	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000366764	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
In-frame	ENST00000334218	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000334218	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
In-frame	ENST00000366766	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000366766	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
In-frame	ENST00000535525	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000535525	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
In-frame	ENST00000366765	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000366765	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
intron-3CDS	ENST00000488131	ENST00000366923		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
intron-intron	ENST00000488131	ENST00000468487		TCGA	RV	BRCA	TCGA-E2-A1LK-01A	CDC42BPA	chr1	227203781	-	EPRS	chr1	220180680	-
5CDS-intron	ENST00000536708	ENST00000500597		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536708	ENST00000407977		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536708	ENST00000583753		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536708	ENST00000584437		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536708	ENST00000577716		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000536708	ENST00000581868		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000536708	ENST00000577625		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536708	ENST00000580014		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000338399	ENST00000500597		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000338399	ENST00000407977		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000338399	ENST00000583753		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000338399	ENST00000584437		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000338399	ENST00000577716		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000338399	ENST00000581868		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000338399	ENST00000577625		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
5CDS-intron	ENST00000338399	ENST00000580014		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-intron	ENST00000578663	ENST00000500597		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-intron	ENST00000578663	ENST00000407977		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-intron	ENST00000578663	ENST00000583753		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-intron	ENST00000578663	ENST00000584437		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-intron	ENST00000578663	ENST00000577716		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000578663	ENST00000581868		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000578663	ENST00000577625		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
intron-intron	ENST00000578663	ENST00000580014		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CDK5RAP3	chr17	46051814	+	RNF43	chr17	56448394	-
Frame-shit	ENST00000256443	ENST00000297313		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000256443	ENST00000344277		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000256443	ENST00000522225		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000256443	ENST00000276500		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5CDS-3UTR	ENST00000256443	ENST00000517405		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000514676	ENST00000297313		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000514676	ENST00000344277		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000514676	ENST00000522225		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000514676	ENST00000276500		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5CDS-3UTR	ENST00000514676	ENST00000517405		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5UTR-3CDS	ENST00000502604	ENST00000297313		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5UTR-3CDS	ENST00000502604	ENST00000344277		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5UTR-5UTR	ENST00000502604	ENST00000522225		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5UTR-5UTR	ENST00000502604	ENST00000276500		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
5UTR-3UTR	ENST00000502604	ENST00000517405		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
3UTR-3CDS	ENST00000513629	ENST00000297313		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
3UTR-3CDS	ENST00000513629	ENST00000344277		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
3UTR-5UTR	ENST00000513629	ENST00000522225		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
3UTR-5UTR	ENST00000513629	ENST00000276500		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
3UTR-3UTR	ENST00000513629	ENST00000517405		TCGA	RV	BRCA	TCGA-C8-A26W-01A	CDK7	chr5	68531280	+	RGS20	chr8	54866636	+
3UTR-3CDS	ENST00000473706	ENST00000406961		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000469850		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000405141		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000407230		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000538539		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000288599		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000348332		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000473706	ENST00000395856		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-3CDS	ENST00000380834	ENST00000406961		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000469850		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000405141		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000407230		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000538539		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000288599		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000348332		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000380834	ENST00000395856		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-3CDS	ENST00000260662	ENST00000406961		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000469850		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000405141		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000407230		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000538539		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000288599		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000348332		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000260662	ENST00000395856		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-3CDS	ENST00000395845	ENST00000406961		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000469850		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000405141		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000407230		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000538539		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000288599		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000348332		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
3UTR-intron	ENST00000395845	ENST00000395856		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	CENPO	chr2	25040710	+	NCOA1	chr2	24985556	+
intron-3CDS	ENST00000309534	ENST00000302328		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000309534	ENST00000450244		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000309534	ENST00000456224		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000309534	ENST00000444237		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000398392	ENST00000302328		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000398392	ENST00000450244		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000398392	ENST00000456224		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000398392	ENST00000444237		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000482016	ENST00000302328		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000482016	ENST00000450244		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000482016	ENST00000456224		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000482016	ENST00000444237		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
5UTR-3CDS	ENST00000462901	ENST00000302328		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
5UTR-3CDS	ENST00000462901	ENST00000450244		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
5UTR-3CDS	ENST00000462901	ENST00000456224		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
5UTR-3CDS	ENST00000462901	ENST00000444237		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000474441	ENST00000302328		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000474441	ENST00000450244		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000474441	ENST00000456224		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
intron-3CDS	ENST00000474441	ENST00000444237		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	CGGBP1	chr3	88190120	-	SCN11A	chr3	38968422	-
5CDS-5UTR	ENST00000466830	ENST00000301765		TCGA	RV	BRCA	TCGA-BH-A18J-01A	CMC1	chr3	28283303	+	VPS37C	chr11	60906307	-
5CDS-5UTR	ENST00000423894	ENST00000301765		TCGA	RV	BRCA	TCGA-BH-A18J-01A	CMC1	chr3	28283303	+	VPS37C	chr11	60906307	-
intron-5UTR	ENST00000469102	ENST00000301765		TCGA	RV	BRCA	TCGA-BH-A18J-01A	CMC1	chr3	28283303	+	VPS37C	chr11	60906307	-
Frame-shit	ENST00000416691	ENST00000374189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
Frame-shit	ENST00000416691	ENST00000374182		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
Frame-shit	ENST00000416691	ENST00000360332		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
5CDS-intron	ENST00000416691	ENST00000374174		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
5CDS-intron	ENST00000416691	ENST00000395611		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
5CDS-3UTR	ENST00000416691	ENST00000459755		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
Frame-shit	ENST00000455146	ENST00000374189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
Frame-shit	ENST00000455146	ENST00000374182		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
Frame-shit	ENST00000455146	ENST00000360332		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
5CDS-intron	ENST00000455146	ENST00000374174		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
5CDS-intron	ENST00000455146	ENST00000395611		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
5CDS-3UTR	ENST00000455146	ENST00000459755		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
intron-3CDS	ENST00000465775	ENST00000374189		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
intron-3CDS	ENST00000465775	ENST00000374182		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
intron-3CDS	ENST00000465775	ENST00000360332		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
intron-intron	ENST00000465775	ENST00000374174		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
intron-intron	ENST00000465775	ENST00000395611		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
intron-3UTR	ENST00000465775	ENST00000459755		TCGA	RV	BRCA	TCGA-C8-A26V-01A	COG6	chr13	40235018	+	MAPK8	chr10	49639236	+
Frame-shit	ENST00000225719	ENST00000336915		TCGA	RV	BRCA	TCGA-C8-A273-01A	CPD	chr17	28712254	+	SKAP1	chr17	46474147	-
In-frame	ENST00000225719	ENST00000584924		TCGA	RV	BRCA	TCGA-C8-A273-01A	CPD	chr17	28712254	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000543464	ENST00000336915		TCGA	RV	BRCA	TCGA-C8-A273-01A	CPD	chr17	28712254	+	SKAP1	chr17	46474147	-
In-frame	ENST00000543464	ENST00000584924		TCGA	RV	BRCA	TCGA-C8-A273-01A	CPD	chr17	28712254	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000584051	ENST00000336915		TCGA	RV	BRCA	TCGA-C8-A273-01A	CPD	chr17	28712254	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000584051	ENST00000584924		TCGA	RV	BRCA	TCGA-C8-A273-01A	CPD	chr17	28712254	+	SKAP1	chr17	46474147	-
In-frame	ENST00000433211	ENST00000542728		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
Frame-shit	ENST00000433211	ENST00000314565		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
Frame-shit	ENST00000433211	ENST00000298571		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
Frame-shit	ENST00000373744	ENST00000542728		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
Frame-shit	ENST00000373744	ENST00000314565		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
Frame-shit	ENST00000373744	ENST00000298571		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-3CDS	ENST00000545309	ENST00000542728		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-3CDS	ENST00000545309	ENST00000314565		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-3CDS	ENST00000545309	ENST00000298571		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-3CDS	ENST00000373735	ENST00000542728		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-3CDS	ENST00000373735	ENST00000314565		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-3CDS	ENST00000373735	ENST00000298571		TCGA	RV	BRCA	TCGA-A7-A5ZX-01A	CTNNA3	chr10	68381450	-	LOH12CR1	chr12	12618480	+
intron-5UTR	ENST00000471014	ENST00000396671		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-5UTR	ENST00000471014	ENST00000356447		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-5UTR	ENST00000471014	ENST00000416420		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-intron	ENST00000471014	ENST00000280696		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-5UTR	ENST00000405570	ENST00000396671		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-5UTR	ENST00000405570	ENST00000356447		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-5UTR	ENST00000405570	ENST00000416420		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-intron	ENST00000405570	ENST00000280696		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000396183	ENST00000396671		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000396183	ENST00000356447		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000396183	ENST00000416420		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-intron	ENST00000396183	ENST00000280696		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000349496	ENST00000396671		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000349496	ENST00000356447		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000349496	ENST00000416420		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-intron	ENST00000349496	ENST00000280696		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000453024	ENST00000396671		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000453024	ENST00000356447		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000453024	ENST00000416420		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-intron	ENST00000453024	ENST00000280696		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000396185	ENST00000396671		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000396185	ENST00000356447		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-5UTR	ENST00000396185	ENST00000416420		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
5UTR-intron	ENST00000396185	ENST00000280696		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CTNNB1	chr3	41241161	+	THRB	chr3	24270492	-
intron-3CDS	ENST00000493385	ENST00000586783		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
intron-3CDS	ENST00000493385	ENST00000454313		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
intron-3CDS	ENST00000493385	ENST00000346736		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
intron-3CDS	ENST00000493385	ENST00000591586		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
Frame-shit	ENST00000370476	ENST00000586783		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
Frame-shit	ENST00000370476	ENST00000454313		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
Frame-shit	ENST00000370476	ENST00000346736		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
Frame-shit	ENST00000370476	ENST00000591586		TCGA	RV	BRCA	TCGA-C8-A12K-01A	CUTC	chr10	101514391	+	C19orf57	chr19	14003703	-
Frame-shit	ENST00000314045	ENST00000299732		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
Frame-shit	ENST00000314045	ENST00000416617		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
5CDS-intron	ENST00000314045	ENST00000546692		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
Frame-shit	ENST00000306014	ENST00000299732		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
Frame-shit	ENST00000306014	ENST00000416617		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
5CDS-intron	ENST00000306014	ENST00000546692		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
intron-3CDS	ENST00000549271	ENST00000299732		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
intron-3CDS	ENST00000549271	ENST00000416617		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
intron-intron	ENST00000549271	ENST00000546692		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	DDX54	chr12	113623083	-	IQCD	chr12	113633694	-
intron-3CDS	ENST00000540693	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000540693	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000337343	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
5CDS-intron	ENST00000337343	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000379274	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
5CDS-intron	ENST00000379274	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-3CDS	ENST00000261491	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000261491	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000536612	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
5CDS-intron	ENST00000536612	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-3CDS	ENST00000498255	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000498255	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-3CDS	ENST00000538674	ENST00000281928		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
intron-intron	ENST00000538674	ENST00000551197		TCGA	RV	BRCA	TCGA-E2-A15A-06A	DGKH	chr13	42795530	+	MED13L	chr12	116460406	-
Frame-shit	ENST00000409013	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
5CDS-intron	ENST00000409013	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
Frame-shit	ENST00000409890	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
5CDS-intron	ENST00000409890	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
3UTR-3CDS	ENST00000490508	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
3UTR-intron	ENST00000490508	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
Frame-shit	ENST00000409344	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
5CDS-intron	ENST00000409344	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
Frame-shit	ENST00000428955	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
5CDS-intron	ENST00000428955	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
Frame-shit	ENST00000393852	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
5CDS-intron	ENST00000393852	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
Frame-shit	ENST00000315658	ENST00000282111		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
5CDS-intron	ENST00000315658	ENST00000494519		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ELMOD3	chr2	85589383	+	TCF7L1	chr2	85536152	+
In-frame	ENST00000350638	ENST00000003084		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
In-frame	ENST00000350638	ENST00000454343		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
5CDS-intron	ENST00000350638	ENST00000608965		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
In-frame	ENST00000379163	ENST00000003084		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
In-frame	ENST00000379163	ENST00000454343		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
5CDS-intron	ENST00000379163	ENST00000608965		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
In-frame	ENST00000395934	ENST00000003084		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
In-frame	ENST00000395934	ENST00000454343		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
5CDS-intron	ENST00000395934	ENST00000608965		TCGA	RV	BRCA	TCGA-AC-A2QH-01A	ELP4	chr11	31616448	+	CFTR	chr7	117170953	+
Frame-shit	ENST00000470610	ENST00000346672		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
Frame-shit	ENST00000470610	ENST00000360962		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
Frame-shit	ENST00000470610	ENST00000527634		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
Frame-shit	ENST00000470610	ENST00000540737		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
Frame-shit	ENST00000470610	ENST00000532565		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
Frame-shit	ENST00000470610	ENST00000525449		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000470610	ENST00000527368		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
In-frame	ENST00000389672	ENST00000346672		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
In-frame	ENST00000389672	ENST00000360962		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
In-frame	ENST00000389672	ENST00000527634		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
In-frame	ENST00000389672	ENST00000540737		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
In-frame	ENST00000389672	ENST00000532565		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
In-frame	ENST00000389672	ENST00000525449		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000389672	ENST00000527368		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000542517	ENST00000346672		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000542517	ENST00000360962		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000542517	ENST00000527634		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000542517	ENST00000540737		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000542517	ENST00000532565		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000542517	ENST00000525449		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000542517	ENST00000527368		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000514100	ENST00000346672		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000514100	ENST00000360962		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000514100	ENST00000527634		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000514100	ENST00000540737		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000514100	ENST00000532565		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000514100	ENST00000525449		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000514100	ENST00000527368		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000502694	ENST00000346672		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000502694	ENST00000360962		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000502694	ENST00000527634		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000502694	ENST00000540737		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000502694	ENST00000532565		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000502694	ENST00000525449		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000502694	ENST00000527368		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000442602	ENST00000346672		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000442602	ENST00000360962		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000442602	ENST00000527634		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000442602	ENST00000540737		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000442602	ENST00000532565		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000442602	ENST00000525449		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000442602	ENST00000527368		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	EPHA6	chr3	96963131	+	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000064778	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-5UTR	ENST00000064778	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000064778	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000064778	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000064778	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000064778	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000064778	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000064778	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-3CDS	ENST00000450446	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-5UTR	ENST00000450446	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000450446	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000450446	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000450446	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000450446	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000450446	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000450446	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-3CDS	ENST00000356467	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-5UTR	ENST00000356467	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000356467	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000356467	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000356467	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000356467	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000356467	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-intron	ENST00000356467	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A15A-01A	FAM168A	chr11	73308968	-	UVRAG	chr11	75572791	+
5UTR-3CDS	ENST00000309137	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000309137	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000309137	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000309137	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000309137	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000309137	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3UTR	ENST00000309137	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-intron	ENST00000309137	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000389447	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000389447	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000566077	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000566077	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000566077	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000566077	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000566077	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000566077	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3UTR	ENST00000566077	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-intron	ENST00000566077	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000569266	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000569266	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000567439	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000567439	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000567439	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000567439	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000567439	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000567439	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3UTR	ENST00000567439	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-intron	ENST00000567439	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000564108	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000564108	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000564108	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000564108	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000564108	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000564108	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-3UTR	ENST00000564108	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
5UTR-intron	ENST00000564108	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000438132		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000542263		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000417362		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000251143		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000543152		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000448695		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000562400	ENST00000544275		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000562400	ENST00000538853		TCGA	RV	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219733	-	C16orf62	chr16	19663298	+
Frame-shit	ENST00000380254	ENST00000437682		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-intron	ENST00000380254	ENST00000519315		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-intron	ENST00000380254	ENST00000379907		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-3UTR	ENST00000380254	ENST00000524303		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
Frame-shit	ENST00000346498	ENST00000437682		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-intron	ENST00000346498	ENST00000519315		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-intron	ENST00000346498	ENST00000379907		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-3UTR	ENST00000346498	ENST00000524303		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
Frame-shit	ENST00000518734	ENST00000437682		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-intron	ENST00000518734	ENST00000519315		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-intron	ENST00000518734	ENST00000379907		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
5CDS-3UTR	ENST00000518734	ENST00000524303		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-3CDS	ENST00000517436	ENST00000437682		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-intron	ENST00000517436	ENST00000519315		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-intron	ENST00000517436	ENST00000379907		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-3UTR	ENST00000517436	ENST00000524303		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-3CDS	ENST00000519471	ENST00000437682		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-intron	ENST00000519471	ENST00000519315		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-intron	ENST00000519471	ENST00000379907		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
intron-3UTR	ENST00000519471	ENST00000524303		TCGA	RV	BRCA	TCGA-A2-A0EX-01A	FBXO16	chr8	28304688	-	ADAM32	chr8	39131831	+
Frame-shit	ENST00000308275	ENST00000308527		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	FBXO22	chr15	76209735	+	SNX33	chr15	75949303	+
Frame-shit	ENST00000453211	ENST00000308527		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	FBXO22	chr15	76209735	+	SNX33	chr15	75949303	+
Frame-shit	ENST00000540507	ENST00000308527		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	FBXO22	chr15	76209735	+	SNX33	chr15	75949303	+
intron-3CDS	ENST00000565131	ENST00000308527		TCGA	RV	BRCA	TCGA-A7-A0CG-01A	FBXO22	chr15	76209735	+	SNX33	chr15	75949303	+
intron-5UTR	ENST00000311172	ENST00000531323		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
intron-intron	ENST00000311172	ENST00000377953		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5CDS-5UTR	ENST00000409314	ENST00000531323		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5CDS-intron	ENST00000409314	ENST00000377953		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5CDS-5UTR	ENST00000409418	ENST00000531323		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5CDS-intron	ENST00000409418	ENST00000377953		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5UTR-5UTR	ENST00000458644	ENST00000531323		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5UTR-intron	ENST00000458644	ENST00000377953		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5UTR-5UTR	ENST00000409853	ENST00000531323		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
5UTR-intron	ENST00000409853	ENST00000377953		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
intron-5UTR	ENST00000409263	ENST00000531323		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
intron-intron	ENST00000409263	ENST00000377953		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	FCHSD2	chr11	72851076	-	C11orf83	chr11	62438756	+
intron-3CDS	ENST00000446823	ENST00000317398		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
intron-intron	ENST00000446823	ENST00000335820		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
intron-intron	ENST00000446823	ENST00000596939		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
intron-5UTR	ENST00000446823	ENST00000594803		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
Frame-shit	ENST00000328914	ENST00000317398		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
5CDS-intron	ENST00000328914	ENST00000335820		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
5CDS-intron	ENST00000328914	ENST00000596939		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
5CDS-5UTR	ENST00000328914	ENST00000594803		TCGA	RV	BRCA	TCGA-S3-AA10-01A	FOXK1	chr7	4722499	+	ZNF671	chr19	58234708	-
In-frame	ENST00000265342	ENST00000519560		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
In-frame	ENST00000265342	ENST00000332966		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
In-frame	ENST00000265342	ENST00000404867		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
5CDS-intron	ENST00000265342	ENST00000521130		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
intron-3CDS	ENST00000507112	ENST00000519560		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
intron-3CDS	ENST00000507112	ENST00000332966		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
intron-3CDS	ENST00000507112	ENST00000404867		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
intron-intron	ENST00000507112	ENST00000521130		TCGA	RV	BRCA	TCGA-AR-A24V-01A	FSTL4	chr5	132537625	-	SLIT3	chr5	168114121	-
3UTR-3CDS	ENST00000482812	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
3UTR-3CDS	ENST00000482812	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
5UTR-3CDS	ENST00000430044	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
5UTR-3CDS	ENST00000430044	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
Frame-shit	ENST00000452146	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
Frame-shit	ENST00000452146	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000434507	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000434507	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000415421	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000415421	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000320311	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000320311	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000422997	ENST00000396062		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
intron-3CDS	ENST00000422997	ENST00000216330		TCGA	RV	BRCA	TCGA-E2-A15A-06A	GALNT11	chr7	151722969	+	FKBP3	chr14	45600003	-
Frame-shit	ENST00000324589	ENST00000238823		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
Frame-shit	ENST00000324589	ENST00000403368		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5CDS-5UTR	ENST00000324589	ENST00000441530		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5CDS-5UTR	ENST00000324589	ENST00000498340		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
Frame-shit	ENST00000349752	ENST00000238823		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
Frame-shit	ENST00000349752	ENST00000403368		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5CDS-5UTR	ENST00000349752	ENST00000441530		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5CDS-5UTR	ENST00000349752	ENST00000498340		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-3CDS	ENST00000406653	ENST00000238823		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-3CDS	ENST00000406653	ENST00000403368		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-5UTR	ENST00000406653	ENST00000441530		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-5UTR	ENST00000406653	ENST00000498340		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
Frame-shit	ENST00000356174	ENST00000238823		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
Frame-shit	ENST00000356174	ENST00000403368		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5CDS-5UTR	ENST00000356174	ENST00000441530		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5CDS-5UTR	ENST00000356174	ENST00000498340		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5UTR-3CDS	ENST00000420311	ENST00000238823		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5UTR-3CDS	ENST00000420311	ENST00000403368		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5UTR-5UTR	ENST00000420311	ENST00000441530		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
5UTR-5UTR	ENST00000420311	ENST00000498340		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-3CDS	ENST00000486564	ENST00000238823		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-3CDS	ENST00000486564	ENST00000403368		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-5UTR	ENST00000486564	ENST00000441530		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
intron-5UTR	ENST00000486564	ENST00000498340		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	GALNT14	chr2	31360824	-	FAM98A	chr2	33820704	-
In-frame	ENST00000373566	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000373566	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000373566	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000373566	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000373563	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000373563	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000373563	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000373563	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409480	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409480	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409480	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409480	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409547	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409547	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409547	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409547	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409196	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409196	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409196	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409196	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409451	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
In-frame	ENST00000409451	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409451	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-intron	ENST00000409451	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-3CDS	ENST00000482666	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-3CDS	ENST00000482666	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-intron	ENST00000482666	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-intron	ENST00000482666	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-3CDS	ENST00000452341	ENST00000543200		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-3CDS	ENST00000452341	ENST00000258385		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-intron	ENST00000452341	ENST00000536614		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
intron-intron	ENST00000452341	ENST00000457943		TCGA	RV	BRCA	TCGA-AR-A256-01A	GIGYF2	chr2	233613792	+	CHRND	chr2	233398641	+
5CDS-5UTR	ENST00000392993	ENST00000356198		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000392993	ENST00000345664		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000392993	ENST00000367710		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-intron	ENST00000392993	ENST00000495275		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000544571	ENST00000356198		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000544571	ENST00000345664		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000544571	ENST00000367710		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-intron	ENST00000544571	ENST00000495275		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5UTR-5UTR	ENST00000466685	ENST00000356198		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5UTR-5UTR	ENST00000466685	ENST00000345664		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5UTR-5UTR	ENST00000466685	ENST00000367710		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5UTR-intron	ENST00000466685	ENST00000495275		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	GK5	chr3	141934441	-	CENPL	chr1	173780444	-
5CDS-3UTR	ENST00000331244	ENST00000593699		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000331244	ENST00000372499		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000331244	ENST00000496424		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000368644	ENST00000593699		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000368644	ENST00000372499		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000368644	ENST00000496424		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000496195	ENST00000593699		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000496195	ENST00000372499		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000496195	ENST00000496424		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78084159	+
Frame-shit	ENST00000405460	ENST00000350721		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	GPR98	chr5	89924649	+	ATR	chr3	142286996	-
Frame-shit	ENST00000405460	ENST00000383101		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	GPR98	chr5	89924649	+	ATR	chr3	142286996	-
intron-3CDS	ENST00000425867	ENST00000350721		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	GPR98	chr5	89924649	+	ATR	chr3	142286996	-
intron-3CDS	ENST00000425867	ENST00000383101		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	GPR98	chr5	89924649	+	ATR	chr3	142286996	-
intron-3CDS	ENST00000450321	ENST00000350721		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	GPR98	chr5	89924649	+	ATR	chr3	142286996	-
intron-3CDS	ENST00000450321	ENST00000383101		TCGA	RV	BRCA	TCGA-AO-A0JA-01A	GPR98	chr5	89924649	+	ATR	chr3	142286996	-
Frame-shit	ENST00000370500	ENST00000262865		TCGA	RV	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36959450	+
5CDS-3UTR	ENST00000370500	ENST00000489102		TCGA	RV	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36959450	+
5CDS-intron	ENST00000370500	ENST00000451435		TCGA	RV	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36959450	+
5UTR-3CDS	ENST00000494819	ENST00000262865		TCGA	RV	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36959450	+
5UTR-3UTR	ENST00000494819	ENST00000489102		TCGA	RV	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36959450	+
5UTR-intron	ENST00000494819	ENST00000451435		TCGA	RV	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36959450	+
5CDS-5UTR	ENST00000393939	ENST00000329402		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HAP1	chr17	39887745	-	GAST	chr17	39871684	+
5CDS-5UTR	ENST00000347901	ENST00000329402		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HAP1	chr17	39887745	-	GAST	chr17	39871684	+
5CDS-5UTR	ENST00000310778	ENST00000329402		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HAP1	chr17	39887745	-	GAST	chr17	39871684	+
5CDS-5UTR	ENST00000341193	ENST00000329402		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HAP1	chr17	39887745	-	GAST	chr17	39871684	+
In-frame	ENST00000253669	ENST00000586783		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
In-frame	ENST00000253669	ENST00000454313		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
In-frame	ENST00000253669	ENST00000346736		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
5CDS-intron	ENST00000253669	ENST00000591586		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
In-frame	ENST00000448593	ENST00000586783		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
In-frame	ENST00000448593	ENST00000454313		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
In-frame	ENST00000448593	ENST00000346736		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
5CDS-intron	ENST00000448593	ENST00000591586		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
Frame-shit	ENST00000593360	ENST00000586783		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
Frame-shit	ENST00000593360	ENST00000454313		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
Frame-shit	ENST00000593360	ENST00000346736		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
5CDS-intron	ENST00000593360	ENST00000591586		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	HAUS8	chr19	17170367	-	C19orf57	chr19	14001275	-
Frame-shit	ENST00000184956	ENST00000450114		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	HEATR6	chr17	58149576	-	WEE1	chr11	9603079	+
Frame-shit	ENST00000184956	ENST00000299613		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	HEATR6	chr17	58149576	-	WEE1	chr11	9603079	+
Frame-shit	ENST00000585976	ENST00000450114		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	HEATR6	chr17	58149576	-	WEE1	chr11	9603079	+
Frame-shit	ENST00000585976	ENST00000299613		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	HEATR6	chr17	58149576	-	WEE1	chr11	9603079	+
intron-3CDS	ENST00000585712	ENST00000450114		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	HEATR6	chr17	58149576	-	WEE1	chr11	9603079	+
intron-3CDS	ENST00000585712	ENST00000299613		TCGA	RV	BRCA	TCGA-E9-A1N8-01A	HEATR6	chr17	58149576	-	WEE1	chr11	9603079	+
In-frame	ENST00000372852	ENST00000372748		TCGA	RV	BRCA	TCGA-E2-A15E-01A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
5CDS-intron	ENST00000372852	ENST00000466267		TCGA	RV	BRCA	TCGA-E2-A15E-01A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
intron-3CDS	ENST00000535435	ENST00000372748		TCGA	RV	BRCA	TCGA-E2-A15E-01A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
intron-intron	ENST00000535435	ENST00000466267		TCGA	RV	BRCA	TCGA-E2-A15E-01A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
5CDS-5UTR	ENST00000268035	ENST00000268130		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000268035	ENST00000560294		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000268035	ENST00000558000		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-intron	ENST00000268035	ENST00000444934		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000558762	ENST00000268130		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000558762	ENST00000560294		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000558762	ENST00000558000		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
5CDS-intron	ENST00000558762	ENST00000444934		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560432	ENST00000268130		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560432	ENST00000560294		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560432	ENST00000558000		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
intron-intron	ENST00000560432	ENST00000444934		TCGA	RV	BRCA	TCGA-A1-A0SF-01A	IGF1R	chr15	99251336	+	WDR93	chr15	90244938	+
Frame-shit	ENST00000420083	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000420083	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000420083	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000449870	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000449870	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000449870	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000318511	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000318511	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000318511	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000407004	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000407004	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000407004	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000589998	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000589998	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000589998	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000250241	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000250241	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000250241	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000592763	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000592763	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000592763	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000588657	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000588657	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000588657	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000590261	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
Frame-shit	ENST00000590261	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000590261	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
intron-3CDS	ENST00000586544	ENST00000357640		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
intron-3CDS	ENST00000586544	ENST00000369752		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
intron-5UTR	ENST00000586544	ENST00000473682		TCGA	RV	BRCA	TCGA-XX-A89A-01A	ILF3	chr19	10787986	+	DENND2D	chr1	111738678	-
5CDS-5UTR	ENST00000374864	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000374864	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000374864	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000535650	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000535650	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000535650	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000262650	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000262650	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000262650	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
3UTR-5UTR	ENST00000483727	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
3UTR-5UTR	ENST00000483727	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
3UTR-intron	ENST00000483727	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	ITCH	chr20	33033266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000263370	ENST00000595535		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000352632		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000344104		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000338932		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000598249		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000392025		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000392023		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000593816		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
Frame-shit	ENST00000382303	ENST00000453981		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382303	ENST00000432829		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382303	ENST00000469391		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382303	ENST00000382331		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382303	ENST00000382329		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
5CDS-intron	ENST00000382303	ENST00000493666		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
3UTR-3CDS	ENST00000489369	ENST00000453981		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
3UTR-3CDS	ENST00000489369	ENST00000432829		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
3UTR-3CDS	ENST00000489369	ENST00000469391		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
3UTR-3CDS	ENST00000489369	ENST00000382331		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
3UTR-3CDS	ENST00000489369	ENST00000382329		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
3UTR-intron	ENST00000489369	ENST00000493666		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382297	ENST00000453981		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382297	ENST00000432829		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382297	ENST00000469391		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382297	ENST00000382331		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382297	ENST00000382329		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
5CDS-intron	ENST00000382297	ENST00000493666		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382293	ENST00000453981		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382293	ENST00000432829		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382293	ENST00000469391		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382293	ENST00000382331		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
Frame-shit	ENST00000382293	ENST00000382329		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
5CDS-intron	ENST00000382293	ENST00000493666		TCGA	RV	BRCA	TCGA-AN-A0XL-01A	KANK1	chr9	713464	+	DOCK8	chr9	396785	+
intron-5UTR	ENST00000271751	ENST00000366997		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	KCNH1	chr1	211192206	-	LPGAT1	chr1	212002665	-
intron-5UTR	ENST00000271751	ENST00000366996		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	KCNH1	chr1	211192206	-	LPGAT1	chr1	212002665	-
intron-5UTR	ENST00000271751	ENST00000488600		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	KCNH1	chr1	211192206	-	LPGAT1	chr1	212002665	-
5CDS-5UTR	ENST00000367007	ENST00000366997		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	KCNH1	chr1	211192206	-	LPGAT1	chr1	212002665	-
5CDS-5UTR	ENST00000367007	ENST00000366996		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	KCNH1	chr1	211192206	-	LPGAT1	chr1	212002665	-
5CDS-5UTR	ENST00000367007	ENST00000488600		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	KCNH1	chr1	211192206	-	LPGAT1	chr1	212002665	-
5CDS-intron	ENST00000300035	ENST00000559565		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
5CDS-intron	ENST00000300035	ENST00000261884		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
5CDS-intron	ENST00000380258	ENST00000559565		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
5CDS-intron	ENST00000380258	ENST00000261884		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
intron-intron	ENST00000559519	ENST00000559565		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
intron-intron	ENST00000559519	ENST00000261884		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
5CDS-intron	ENST00000558008	ENST00000559565		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
5CDS-intron	ENST00000558008	ENST00000261884		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
intron-intron	ENST00000558250	ENST00000559565		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
intron-intron	ENST00000558250	ENST00000261884		TCGA	RV	BRCA	TCGA-BH-A1FU-01A	KIAA0101	chr15	64673157	-	TRIP4	chr15	64698529	+
5CDS-5UTR	ENST00000392903	ENST00000368898		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000392903	ENST00000462859		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000392903	ENST00000368896		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000260777	ENST00000368898		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000260777	ENST00000462859		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000260777	ENST00000368896		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000355371	ENST00000368898		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000355371	ENST00000462859		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000355371	ENST00000368896		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
intron-5UTR	ENST00000392901	ENST00000368898		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
intron-5UTR	ENST00000392901	ENST00000462859		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
intron-5UTR	ENST00000392901	ENST00000368896		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
intron-5UTR	ENST00000497044	ENST00000368898		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
intron-5UTR	ENST00000497044	ENST00000462859		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
intron-5UTR	ENST00000497044	ENST00000368896		TCGA	RV	BRCA	TCGA-LL-A73Z-01A	KIAA1598	chr10	118764533	-	FAM24B	chr10	124615302	-
5CDS-5UTR	ENST00000311936	ENST00000541632		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000311936	ENST00000229002		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000311936	ENST00000538724		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000311936	ENST00000536890		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000557334	ENST00000541632		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000557334	ENST00000229002		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000557334	ENST00000538724		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000557334	ENST00000536890		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000256078	ENST00000541632		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000256078	ENST00000229002		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000256078	ENST00000538724		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000256078	ENST00000536890		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000556131	ENST00000541632		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000556131	ENST00000229002		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000556131	ENST00000538724		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000556131	ENST00000536890		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	KRAS	chr12	25398208	-	RERGL	chr12	18241890	-
In-frame	ENST00000526589	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526589	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526589	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526589	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000527974	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000527974	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000527974	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000527974	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000352231	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000352231	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000352231	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000352231	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000341872	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000341872	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000341872	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000341872	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000450372	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000450372	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000450372	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000450372	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000366584	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000366584	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000366584	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000366584	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000416919	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000416919	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000416919	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000416919	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000323938	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000323938	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000323938	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000323938	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526634	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526634	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526634	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000526634	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000525042	ENST00000444294		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000525042	ENST00000366652		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000525042	ENST00000449018		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
In-frame	ENST00000525042	ENST00000366653		TCGA	RV	BRCA	TCGA-E2-A15M-01A	LGALS8	chr1	236689415	+	TRIM67	chr1	231333117	+
5CDS-intron	ENST00000378526	ENST00000393939		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000378526	ENST00000347901		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000378526	ENST00000310778		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000378526	ENST00000341193		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000262327	ENST00000393939		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000262327	ENST00000347901		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000262327	ENST00000310778		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
5CDS-intron	ENST00000262327	ENST00000341193		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
intron-intron	ENST00000586407	ENST00000393939		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
intron-intron	ENST00000586407	ENST00000347901		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
intron-intron	ENST00000586407	ENST00000310778		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
intron-intron	ENST00000586407	ENST00000341193		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	LIG3	chr17	33318133	+	HAP1	chr17	39874278	-
Frame-shit	ENST00000552864	ENST00000261180		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LIN7A	chr12	81331420	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000552864	ENST00000549138		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LIN7A	chr12	81331420	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000512091	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000512091	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000512091	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000512091	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000512091	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000512091	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000512091	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514591	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514591	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514591	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514591	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514591	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514591	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514591	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000511324	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000511324	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000511324	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000511324	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000511324	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000511324	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000511324	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506700	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506700	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506700	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506700	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506700	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506700	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506700	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000509896	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000509896	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000509896	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000509896	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000509896	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000509896	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000509896	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000545650	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000545650	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000545650	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000545650	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000545650	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000545650	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000545650	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508693	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508693	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508693	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508693	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000508693	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000508693	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000508693	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507164	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507164	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507164	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507164	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000507164	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000507164	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000507164	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507625	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507625	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507625	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000507625	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000507625	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000507625	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000507625	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514157	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514157	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514157	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514157	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514157	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514157	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514157	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000504896	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000504896	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000504896	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000504896	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000504896	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000504896	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000504896	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514996	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514996	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514996	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000514996	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514996	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514996	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000514996	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506720	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506720	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506720	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506720	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506720	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506720	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506720	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506746	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506746	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506746	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000506746	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506746	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506746	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000506746	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508946	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508946	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508946	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-intron	ENST00000508946	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000508946	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000508946	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5CDS-5UTR	ENST00000508946	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-intron	ENST00000508078	ENST00000512215		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-intron	ENST00000508078	ENST00000394854		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-intron	ENST00000508078	ENST00000323055		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-intron	ENST00000508078	ENST00000394853		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-5UTR	ENST00000508078	ENST00000507176		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-5UTR	ENST00000508078	ENST00000523694		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
intron-5UTR	ENST00000508078	ENST00000510292		TCGA	RV	BRCA	TCGA-E2-A10F-01A	LPHN3	chr4	62679607	+	PPP3CA	chr4	102030235	-
5UTR-3CDS	ENST00000435085	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000435085	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000435085	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000435085	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000435085	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000435085	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000435085	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-intron	ENST00000435085	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000307198	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-intron	ENST00000307198	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-3CDS	ENST00000419228	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5UTR-intron	ENST00000419228	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000447974	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000447974	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000289488	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000289488	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539271	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-intron	ENST00000539271	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000423494	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-intron	ENST00000423494	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000539587	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-intron	ENST00000539587	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000538478	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000538478	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000324866	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000324866	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000439209	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000439209	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000541614	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000541614	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
In-frame	ENST00000536917	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
5CDS-intron	ENST00000536917	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000589123		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000346156		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000395111		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000586919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000341919		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000590282		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-3CDS	ENST00000440313	ENST00000443272		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
intron-intron	ENST00000440313	ENST00000588839		TCGA	RV	BRCA	TCGA-A8-A097-01A	LRTOMT	chr11	71800211	+	NFIC	chr19	3449012	+
Frame-shit	ENST00000369617	ENST00000356415		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369617	ENST00000436150		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369617	ENST00000369709		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369617	ENST00000545460		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
5CDS-3UTR	ENST00000369617	ENST00000494982		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000307546	ENST00000356415		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000307546	ENST00000436150		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000307546	ENST00000369709		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000307546	ENST00000545460		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
5CDS-3UTR	ENST00000307546	ENST00000494982		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369615	ENST00000356415		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369615	ENST00000436150		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369615	ENST00000369709		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369615	ENST00000545460		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
5CDS-3UTR	ENST00000369615	ENST00000494982		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369611	ENST00000356415		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369611	ENST00000436150		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369611	ENST00000369709		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
Frame-shit	ENST00000369611	ENST00000545460		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
5CDS-3UTR	ENST00000369611	ENST00000494982		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
3UTR-3CDS	ENST00000486456	ENST00000356415		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
3UTR-3CDS	ENST00000486456	ENST00000436150		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
3UTR-3CDS	ENST00000486456	ENST00000369709		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
3UTR-3CDS	ENST00000486456	ENST00000545460		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
3UTR-3UTR	ENST00000486456	ENST00000494982		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MAGI3	chr1	113933971	+	RAP1A	chr1	112245958	+
5CDS-intron	ENST00000282488	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000282488	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000282486	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000282486	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000355460	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000355460	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
intron-intron	ENST00000493459	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
intron-intron	ENST00000493459	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000324210	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000324210	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000498502	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000498502	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000545754	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000545754	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000357472	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000357472	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000324196	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000324196	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000485910	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000485910	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000463374	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000463374	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000492948	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000492948	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000485509	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
5CDS-intron	ENST00000485509	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
3UTR-intron	ENST00000461436	ENST00000454872		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
3UTR-intron	ENST00000461436	ENST00000473253		TCGA	RV	BRCA	TCGA-C8-A12Y-01A	MBNL1	chr3	152018156	+	NAALADL2	chr3	174455431	+
Frame-shit	ENST00000394287	ENST00000282881		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000394287	ENST00000539744		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000394287	ENST00000458174		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000394287	ENST00000445693		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000394287	ENST00000413632		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000300651	ENST00000282881		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000300651	ENST00000539744		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000300651	ENST00000458174		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000300651	ENST00000445693		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000300651	ENST00000413632		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MED1	chr17	37599803	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000397786	ENST00000340001		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
Frame-shit	ENST00000397786	ENST00000453985		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
Frame-shit	ENST00000397786	ENST00000370732		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
5CDS-intron	ENST00000397786	ENST00000482072		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
5CDS-intron	ENST00000397786	ENST00000495634		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
intron-3CDS	ENST00000580896	ENST00000340001		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
intron-3CDS	ENST00000580896	ENST00000453985		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
intron-3CDS	ENST00000580896	ENST00000370732		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
intron-intron	ENST00000580896	ENST00000482072		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
intron-intron	ENST00000580896	ENST00000495634		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	MED13	chr17	60038949	-	ABCA9	chr17	67025368	-
Frame-shit	ENST00000397786	ENST00000424789		TCGA	RV	BRCA	TCGA-AR-A252-01A	MED13	chr17	60042367	-	TANC2	chr17	61151304	+
Frame-shit	ENST00000397786	ENST00000389520		TCGA	RV	BRCA	TCGA-AR-A252-01A	MED13	chr17	60042367	-	TANC2	chr17	61151304	+
intron-3CDS	ENST00000580896	ENST00000424789		TCGA	RV	BRCA	TCGA-AR-A252-01A	MED13	chr17	60042367	-	TANC2	chr17	61151304	+
intron-3CDS	ENST00000580896	ENST00000389520		TCGA	RV	BRCA	TCGA-AR-A252-01A	MED13	chr17	60042367	-	TANC2	chr17	61151304	+
5CDS-5UTR	ENST00000265350	ENST00000537663		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5CDS-5UTR	ENST00000265350	ENST00000544682		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5CDS-5UTR	ENST00000265350	ENST00000488300		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5CDS-intron	ENST00000265350	ENST00000537388		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5UTR-5UTR	ENST00000467535	ENST00000537663		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5UTR-5UTR	ENST00000467535	ENST00000544682		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5UTR-5UTR	ENST00000467535	ENST00000488300		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
5UTR-intron	ENST00000467535	ENST00000537388		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-5UTR	ENST00000409312	ENST00000537663		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-5UTR	ENST00000409312	ENST00000544682		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-5UTR	ENST00000409312	ENST00000488300		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-intron	ENST00000409312	ENST00000537388		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-5UTR	ENST00000409060	ENST00000537663		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-5UTR	ENST00000409060	ENST00000544682		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-5UTR	ENST00000409060	ENST00000488300		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
intron-intron	ENST00000409060	ENST00000537388		TCGA	RV	BRCA	TCGA-BH-A18U-01A	MED20	chr6	41877007	-	RNF182	chr6	13974441	+
In-frame	ENST00000545383	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000545383	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000545383	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000545383	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000545383	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000545383	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000545383	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000545383	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000545383	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000262794	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000262794	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000262794	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000262794	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000262794	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000262794	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000262794	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000262794	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000262794	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000395858	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000395858	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000395858	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000395858	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000395858	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000395858	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000395858	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000395858	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000395858	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-3CDS	ENST00000395843	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-3CDS	ENST00000395843	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-3CDS	ENST00000395843	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-3CDS	ENST00000395843	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-3CDS	ENST00000395843	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-3CDS	ENST00000395843	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-intron	ENST00000395843	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-intron	ENST00000395843	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5UTR-intron	ENST00000395843	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000540615	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000540615	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000540615	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000540615	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000540615	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
In-frame	ENST00000540615	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000540615	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000540615	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
5CDS-intron	ENST00000540615	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000395852	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000395852	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000395852	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000395852	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000395852	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000395852	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000395852	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000395852	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000395852	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000354853	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000354853	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000354853	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000354853	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000354853	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000354853	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000354853	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000354853	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000354853	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000475190	ENST00000360655		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000475190	ENST00000396085		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000475190	ENST00000349880		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000475190	ENST00000396087		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000475190	ENST00000527559		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-3CDS	ENST00000475190	ENST00000540292		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000475190	ENST00000533917		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000475190	ENST00000311043		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
intron-intron	ENST00000475190	ENST00000534229		TCGA	RV	BRCA	TCGA-C8-A27A-01A	MOV10L1	chr22	50555780	+	NAV2	chr11	20005671	+
Frame-shit	ENST00000255087	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
5CDS-intron	ENST00000255087	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
5UTR-3CDS	ENST00000540869	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
5UTR-intron	ENST00000540869	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
intron-3CDS	ENST00000443940	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
intron-intron	ENST00000443940	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
intron-3CDS	ENST00000544963	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
intron-intron	ENST00000544963	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2D9-01A	MTL5	chr11	68506168	-	SART1	chr11	65746071	+
5UTR-5UTR	ENST00000354329	ENST00000416426		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000354329	ENST00000284073		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000354329	ENST00000322684		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000354329	ENST00000442934		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000354329	ENST00000579180		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000354329	ENST00000579505		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000529578	ENST00000416426		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000529578	ENST00000284073		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000529578	ENST00000322684		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-intron	ENST00000529578	ENST00000442934		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-intron	ENST00000529578	ENST00000579180		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-intron	ENST00000529578	ENST00000579505		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000533112	ENST00000416426		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000533112	ENST00000284073		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000533112	ENST00000322684		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-intron	ENST00000533112	ENST00000442934		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-intron	ENST00000533112	ENST00000579180		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
intron-intron	ENST00000533112	ENST00000579505		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000531253	ENST00000416426		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000531253	ENST00000284073		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000531253	ENST00000322684		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000531253	ENST00000442934		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000531253	ENST00000579180		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000531253	ENST00000579505		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000527372	ENST00000416426		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000527372	ENST00000284073		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000527372	ENST00000322684		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000527372	ENST00000442934		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000527372	ENST00000579180		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000527372	ENST00000579505		TCGA	RV	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27507331	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000285039	ENST00000580436		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000285039	ENST00000400606		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
5CDS-5UTR	ENST00000285039	ENST00000540035		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000285039	ENST00000581619		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000285039	ENST00000338387		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000285039	ENST00000579494		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000324581	ENST00000580436		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000324581	ENST00000400606		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-5UTR	ENST00000324581	ENST00000540035		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000324581	ENST00000581619		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000324581	ENST00000338387		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000324581	ENST00000579494		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000592688	ENST00000580436		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000592688	ENST00000400606		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-5UTR	ENST00000592688	ENST00000540035		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000592688	ENST00000581619		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000592688	ENST00000338387		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000592688	ENST00000579494		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000587895	ENST00000580436		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000587895	ENST00000400606		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-5UTR	ENST00000587895	ENST00000540035		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000587895	ENST00000581619		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000587895	ENST00000338387		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
intron-intron	ENST00000587895	ENST00000579494		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	606978	+
Frame-shit	ENST00000595618	ENST00000553331		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000595618	ENST00000216832		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000595618	ENST00000556530		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
5CDS-intron	ENST00000595618	ENST00000557680		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000594824	ENST00000553331		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000594824	ENST00000216832		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000594824	ENST00000556530		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
5CDS-intron	ENST00000594824	ENST00000557680		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000397274	ENST00000553331		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000397274	ENST00000216832		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
Frame-shit	ENST00000397274	ENST00000556530		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
5CDS-intron	ENST00000397274	ENST00000557680		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
intron-3CDS	ENST00000593411	ENST00000553331		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
intron-3CDS	ENST00000593411	ENST00000216832		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
intron-3CDS	ENST00000593411	ENST00000556530		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
intron-intron	ENST00000593411	ENST00000557680		TCGA	RV	BRCA	TCGA-B6-A1KN-01A	MYO9B	chr19	17273932	+	PNN	chr14	39645731	+
5CDS-5UTR	ENST00000454872	ENST00000440469		TCGA	RV	BRCA	TCGA-D8-A27N-01A	NAALADL2	chr3	175189546	+	FBXO45	chr3	196304324	+
5CDS-5UTR	ENST00000454872	ENST00000311630		TCGA	RV	BRCA	TCGA-D8-A27N-01A	NAALADL2	chr3	175189546	+	FBXO45	chr3	196304324	+
3UTR-5UTR	ENST00000473253	ENST00000440469		TCGA	RV	BRCA	TCGA-D8-A27N-01A	NAALADL2	chr3	175189546	+	FBXO45	chr3	196304324	+
3UTR-5UTR	ENST00000473253	ENST00000311630		TCGA	RV	BRCA	TCGA-D8-A27N-01A	NAALADL2	chr3	175189546	+	FBXO45	chr3	196304324	+
intron-intron	ENST00000542979	ENST00000431264		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
intron-intron	ENST00000542979	ENST00000424526		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
intron-intron	ENST00000542979	ENST00000400483		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
intron-intron	ENST00000542979	ENST00000269218		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
intron-intron	ENST00000542979	ENST00000580732		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
intron-intron	ENST00000542979	ENST00000578368		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
5CDS-intron	ENST00000322897	ENST00000431264		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
5CDS-intron	ENST00000322897	ENST00000424526		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
5CDS-intron	ENST00000322897	ENST00000400483		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
5CDS-intron	ENST00000322897	ENST00000269218		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
5CDS-intron	ENST00000322897	ENST00000580732		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
5CDS-intron	ENST00000322897	ENST00000578368		TCGA	RV	BRCA	TCGA-AN-A04A-01A	NAPG	chr18	10530834	+	GREB1L	chr18	19052992	+
Frame-shit	ENST00000356175	ENST00000315596		TCGA	RV	BRCA	TCGA-E9-A22D-01A	NF1	chr17	29422387	+	PDS5B	chr13	33281071	+
Frame-shit	ENST00000358273	ENST00000315596		TCGA	RV	BRCA	TCGA-E9-A22D-01A	NF1	chr17	29422387	+	PDS5B	chr13	33281071	+
Frame-shit	ENST00000431387	ENST00000315596		TCGA	RV	BRCA	TCGA-E9-A22D-01A	NF1	chr17	29422387	+	PDS5B	chr13	33281071	+
intron-3CDS	ENST00000581113	ENST00000315596		TCGA	RV	BRCA	TCGA-E9-A22D-01A	NF1	chr17	29422387	+	PDS5B	chr13	33281071	+
intron-3CDS	ENST00000417592	ENST00000315596		TCGA	RV	BRCA	TCGA-E9-A22D-01A	NF1	chr17	29422387	+	PDS5B	chr13	33281071	+
intron-3CDS	ENST00000444181	ENST00000315596		TCGA	RV	BRCA	TCGA-E9-A22D-01A	NF1	chr17	29422387	+	PDS5B	chr13	33281071	+
Frame-shit	ENST00000371191	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
Frame-shit	ENST00000407417	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
3UTR-3CDS	ENST00000479364	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
Frame-shit	ENST00000371189	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
Frame-shit	ENST00000403491	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
Frame-shit	ENST00000371187	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
Frame-shit	ENST00000485903	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
intron-3CDS	ENST00000371185	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
intron-3CDS	ENST00000371184	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
intron-3CDS	ENST00000357977	ENST00000367576		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	NFIA	chr1	61743257	+	LTV1	chr6	144167188	+
5CDS-intron	ENST00000305141	ENST00000287600		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	NMUR1	chr2	232395070	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000305141	ENST00000409772		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	NMUR1	chr2	232395070	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000305141	ENST00000477748		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	NMUR1	chr2	232395070	-	PDE6D	chr2	232603912	-
In-frame	ENST00000277746	ENST00000371531		TCGA	RV	BRCA	TCGA-E2-A576-01A	NRBF2	chr10	64893260	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000277746	ENST00000224356		TCGA	RV	BRCA	TCGA-E2-A576-01A	NRBF2	chr10	64893260	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000277746	ENST00000394139		TCGA	RV	BRCA	TCGA-E2-A576-01A	NRBF2	chr10	64893260	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000435510	ENST00000371531		TCGA	RV	BRCA	TCGA-E2-A576-01A	NRBF2	chr10	64893260	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000435510	ENST00000224356		TCGA	RV	BRCA	TCGA-E2-A576-01A	NRBF2	chr10	64893260	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000435510	ENST00000394139		TCGA	RV	BRCA	TCGA-E2-A576-01A	NRBF2	chr10	64893260	+	CYP26A1	chr10	94835583	+
5UTR-3CDS	ENST00000351960	ENST00000449833		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000351960	ENST00000409161		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000351960	ENST00000423696		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000351960	ENST00000338508		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000351960	ENST00000409530		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000351960	ENST00000449116		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000351960	ENST00000357171		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-intron	ENST00000351960	ENST00000468619		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000449833		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000409161		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000423696		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000338508		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000409530		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000449116		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000358965	ENST00000357171		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-intron	ENST00000358965	ENST00000468619		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000449833		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000409161		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000423696		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000338508		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000409530		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000449116		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000393695	ENST00000357171		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-intron	ENST00000393695	ENST00000468619		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000449833		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000409161		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000423696		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000338508		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000409530		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000449116		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-3CDS	ENST00000543450	ENST00000357171		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
5UTR-intron	ENST00000543450	ENST00000468619		TCGA	RV	BRCA	TCGA-PL-A8LX-01A	NUMA1	chr11	71780888	-	SHANK2	chr11	70349036	-
In-frame	ENST00000231498	ENST00000347230		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
5CDS-intron	ENST00000231498	ENST00000557306		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
5CDS-intron	ENST00000231498	ENST00000555452		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
intron-3CDS	ENST00000381843	ENST00000347230		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
intron-intron	ENST00000381843	ENST00000557306		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
intron-intron	ENST00000381843	ENST00000555452		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
In-frame	ENST00000513532	ENST00000347230		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
5CDS-intron	ENST00000513532	ENST00000557306		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
5CDS-intron	ENST00000513532	ENST00000555452		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
intron-3CDS	ENST00000502533	ENST00000347230		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
intron-intron	ENST00000502533	ENST00000557306		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
intron-intron	ENST00000502533	ENST00000555452		TCGA	RV	BRCA	TCGA-E2-A15K-01A	NUP155	chr5	37370923	-	ZFYVE26	chr14	68244965	-
5CDS-intron	ENST00000304046	ENST00000257497		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000304046	ENST00000376911		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000304046	ENST00000491192		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000579695	ENST00000257497		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000579695	ENST00000376911		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000579695	ENST00000491192		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000394169	ENST00000257497		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000394169	ENST00000376911		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000394169	ENST00000491192		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000584220	ENST00000257497		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000584220	ENST00000376911		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000584220	ENST00000491192		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000582052	ENST00000257497		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000582052	ENST00000376911		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000582052	ENST00000491192		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	ORMDL3	chr17	38077294	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000263847	ENST00000538401		TCGA	RV	BRCA	TCGA-A8-A06N-01A	OSBP	chr11	59375957	-	GAL	chr11	68458385	+
5CDS-intron	ENST00000263847	ENST00000265643		TCGA	RV	BRCA	TCGA-A8-A06N-01A	OSBP	chr11	59375957	-	GAL	chr11	68458385	+
5UTR-3UTR	ENST00000362003	ENST00000296306		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000362003	ENST00000310340		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000362003	ENST00000453061		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000362003	ENST00000504346		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000362003	ENST00000383028		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000362003	ENST00000536264		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000362003	ENST00000502311		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000362003	ENST00000503111		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000362003	ENST00000509768		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000400151	ENST00000296306		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000400151	ENST00000310340		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000400151	ENST00000453061		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000400151	ENST00000504346		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000400151	ENST00000383028		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000400151	ENST00000536264		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000400151	ENST00000502311		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000400151	ENST00000503111		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000400151	ENST00000509768		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-3UTR	ENST00000482726	ENST00000296306		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-3UTR	ENST00000482726	ENST00000310340		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-3UTR	ENST00000482726	ENST00000453061		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-3UTR	ENST00000482726	ENST00000504346		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-3UTR	ENST00000482726	ENST00000383028		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-intron	ENST00000482726	ENST00000536264		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-intron	ENST00000482726	ENST00000502311		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-intron	ENST00000482726	ENST00000503111		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
3UTR-intron	ENST00000482726	ENST00000509768		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000470161	ENST00000296306		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000470161	ENST00000310340		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000470161	ENST00000453061		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000470161	ENST00000504346		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000470161	ENST00000383028		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000470161	ENST00000536264		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000470161	ENST00000502311		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000470161	ENST00000503111		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000470161	ENST00000509768		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000521023	ENST00000296306		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000521023	ENST00000310340		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000521023	ENST00000453061		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000521023	ENST00000504346		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000521023	ENST00000383028		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000521023	ENST00000536264		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000521023	ENST00000502311		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000521023	ENST00000503111		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000521023	ENST00000509768		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000505655	ENST00000296306		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000505655	ENST00000310340		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000505655	ENST00000453061		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000505655	ENST00000504346		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-3UTR	ENST00000505655	ENST00000383028		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000505655	ENST00000536264		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000505655	ENST00000502311		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000505655	ENST00000503111		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000505655	ENST00000509768		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PCGF3	chr4	724899	+	PIGG	chr4	532942	+
5UTR-intron	ENST00000360540	ENST00000276480		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000360540	ENST00000522102		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5CDS-intron	ENST00000544451	ENST00000276480		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5CDS-intron	ENST00000544451	ENST00000522102		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000519559	ENST00000276480		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000519559	ENST00000522102		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000522514	ENST00000276480		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000522514	ENST00000522102		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000521344	ENST00000276480		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000521344	ENST00000522102		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
Frame-shit	ENST00000258229	ENST00000366669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000258229	ENST00000535166		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000258229	ENST00000366668		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000258229	ENST00000534989		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000258229	ENST00000546013		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5CDS-intron	ENST00000258229	ENST00000490900		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000344698	ENST00000366669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000344698	ENST00000535166		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000344698	ENST00000366668		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000344698	ENST00000534989		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000344698	ENST00000546013		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-intron	ENST00000344698	ENST00000490900		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000488780	ENST00000366669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000488780	ENST00000535166		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000488780	ENST00000366668		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000488780	ENST00000534989		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
Frame-shit	ENST00000488780	ENST00000546013		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5CDS-intron	ENST00000488780	ENST00000490900		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5UTR-3CDS	ENST00000520463	ENST00000366669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5UTR-3CDS	ENST00000520463	ENST00000535166		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5UTR-3CDS	ENST00000520463	ENST00000366668		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5UTR-3CDS	ENST00000520463	ENST00000534989		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5UTR-3CDS	ENST00000520463	ENST00000546013		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5UTR-intron	ENST00000520463	ENST00000490900		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000430153	ENST00000366669		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000430153	ENST00000535166		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000430153	ENST00000366668		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000430153	ENST00000534989		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-3CDS	ENST00000430153	ENST00000546013		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
intron-intron	ENST00000430153	ENST00000490900		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	PCNXL2	chr1	233296029	-	COG2	chr1	230819320	+
5CDS-5UTR	ENST00000369037	ENST00000358026		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369037	ENST00000344626		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369037	ENST00000429416		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369037	ENST00000541122		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369037	ENST00000589677		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369037	ENST00000444061		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369037	ENST00000590574		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000369037	ENST00000413806		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000369037	ENST00000450717		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000369037	ENST00000538456		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000358026		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000344626		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000429416		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000541122		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000589677		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000444061		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000453874	ENST00000590574		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000453874	ENST00000413806		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000453874	ENST00000450717		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000453874	ENST00000538456		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000358026		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000344626		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000429416		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000541122		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000589677		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000444061		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000369031	ENST00000590574		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000369031	ENST00000413806		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000369031	ENST00000450717		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000369031	ENST00000538456		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094797	+
Frame-shit	ENST00000374820	ENST00000282268		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
Frame-shit	ENST00000374820	ENST00000338635		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
Frame-shit	ENST00000374820	ENST00000396027		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
Frame-shit	ENST00000374820	ENST00000511817		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
5CDS-3UTR	ENST00000374820	ENST00000509268		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
In-frame	ENST00000452740	ENST00000282268		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
In-frame	ENST00000452740	ENST00000338635		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
In-frame	ENST00000452740	ENST00000396027		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
In-frame	ENST00000452740	ENST00000511817		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
5CDS-3UTR	ENST00000452740	ENST00000509268		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
intron-3CDS	ENST00000480175	ENST00000282268		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
intron-3CDS	ENST00000480175	ENST00000338635		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
intron-3CDS	ENST00000480175	ENST00000396027		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
intron-3CDS	ENST00000480175	ENST00000511817		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
intron-3UTR	ENST00000480175	ENST00000509268		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PIGU	chr20	33203846	-	XRCC4	chr5	82554349	+
intron-3CDS	ENST00000461497	ENST00000398457		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000461497	ENST00000462050		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000461497	ENST00000347800		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000461497	ENST00000398449		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000461497	ENST00000361802		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-3UTR	ENST00000461497	ENST00000343687		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-intron	ENST00000461497	ENST00000398437		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
intron-intron	ENST00000461497	ENST00000340588		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
In-frame	ENST00000282903	ENST00000398457		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000282903	ENST00000462050		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000282903	ENST00000347800		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000282903	ENST00000398449		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000282903	ENST00000361802		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000282903	ENST00000343687		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000282903	ENST00000398437		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000282903	ENST00000340588		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
In-frame	ENST00000360060	ENST00000398457		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000360060	ENST00000462050		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000360060	ENST00000347800		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000360060	ENST00000398449		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000360060	ENST00000361802		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000360060	ENST00000343687		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000360060	ENST00000398437		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000360060	ENST00000340588		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
Frame-shit	ENST00000494950	ENST00000398457		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000494950	ENST00000462050		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000494950	ENST00000347800		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000494950	ENST00000398449		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000494950	ENST00000361802		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000494950	ENST00000343687		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000494950	ENST00000398437		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000494950	ENST00000340588		TCGA	RV	BRCA	TCGA-AO-A129-01A	PLOD2	chr3	145824319	-	ABCG1	chr21	43645781	+
Frame-shit	ENST00000377242	ENST00000377602		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	PLXDC2	chr10	20357168	+	ST8SIA6	chr10	17432619	-
Frame-shit	ENST00000377252	ENST00000377602		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	PLXDC2	chr10	20357168	+	ST8SIA6	chr10	17432619	-
3UTR-3CDS	ENST00000377238	ENST00000377602		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	PLXDC2	chr10	20357168	+	ST8SIA6	chr10	17432619	-
5CDS-5UTR	ENST00000367866	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000367866	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000367866	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
intron-5UTR	ENST00000452019	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
intron-5UTR	ENST00000452019	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
intron-5UTR	ENST00000452019	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000429375	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000429375	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000429375	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
3UTR-5UTR	ENST00000367865	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
3UTR-5UTR	ENST00000367865	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
3UTR-5UTR	ENST00000367865	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000541643	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000541643	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000541643	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000420254	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000420254	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000420254	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000367862	ENST00000483825		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000367862	ENST00000362089		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
5CDS-5UTR	ENST00000367862	ENST00000392122		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POU2F1	chr1	167370793	+	CD247	chr1	167404671	-
Frame-shit	ENST00000358506	ENST00000327757		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000358506	ENST00000422425		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000358506	ENST00000541605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000358506	ENST00000329020		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
Frame-shit	ENST00000296122	ENST00000327757		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000296122	ENST00000422425		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000296122	ENST00000541605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000296122	ENST00000329020		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
Frame-shit	ENST00000395366	ENST00000327757		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000395366	ENST00000422425		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000395366	ENST00000541605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
5CDS-intron	ENST00000395366	ENST00000329020		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28804935	+
Frame-shit	ENST00000511072	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000511072	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000442529	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000442529	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000378398	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000378398	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000441472	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000441472	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000378391	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000378391	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000514189	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000514189	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000270722	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000270722	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
intron-3CDS	ENST00000512462	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
intron-5UTR	ENST00000512462	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	PRDM16	chr1	2985860	+	NARS2	chr11	78282489	-
In-frame	ENST00000246794	ENST00000447857		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	PRRG2	chr19	50086974	+	CCDC155	chr19	49912224	+
5CDS-intron	ENST00000246794	ENST00000593725		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	PRRG2	chr19	50086974	+	CCDC155	chr19	49912224	+
intron-3CDS	ENST00000596700	ENST00000447857		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	PRRG2	chr19	50086974	+	CCDC155	chr19	49912224	+
intron-intron	ENST00000596700	ENST00000593725		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	PRRG2	chr19	50086974	+	CCDC155	chr19	49912224	+
5CDS-5UTR	ENST00000264710	ENST00000406961		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-intron	ENST00000264710	ENST00000469850		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000264710	ENST00000405141		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000264710	ENST00000407230		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000264710	ENST00000538539		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000264710	ENST00000288599		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000264710	ENST00000348332		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000264710	ENST00000395856		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000406961		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-intron	ENST00000462003	ENST00000469850		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000405141		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000407230		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000538539		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000288599		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000348332		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462003	ENST00000395856		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	RAB10	chr2	26257604	+	NCOA1	chr2	24866835	+
In-frame	ENST00000306897	ENST00000269080		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RAC3	chr17	79989672	+	ABCA8	chr17	66865920	-
In-frame	ENST00000306897	ENST00000430352		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RAC3	chr17	79989672	+	ABCA8	chr17	66865920	-
In-frame	ENST00000306897	ENST00000586539		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RAC3	chr17	79989672	+	ABCA8	chr17	66865920	-
5CDS-5UTR	ENST00000373670	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373670	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373670	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373670	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373670	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000373670	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000373670	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000373670	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000357244	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000357244	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000357244	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000357244	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000357244	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000357244	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000357244	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000357244	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000423239	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000423239	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000423239	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000423239	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000423239	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000423239	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000423239	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000423239	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373665	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373665	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373665	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373665	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000373665	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000373665	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000373665	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000373665	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000335387	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000335387	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000335387	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000335387	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-5UTR	ENST00000335387	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000335387	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000335387	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
5CDS-intron	ENST00000335387	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000478216	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000478216	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000478216	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000478216	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000478216	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-intron	ENST00000478216	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-intron	ENST00000478216	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-intron	ENST00000478216	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000471874	ENST00000546115		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000471874	ENST00000373730		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000471874	ENST00000297908		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000471874	ENST00000344641		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-5UTR	ENST00000471874	ENST00000373723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-intron	ENST00000471874	ENST00000373729		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-intron	ENST00000471874	ENST00000373724		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
intron-intron	ENST00000471874	ENST00000394315		TCGA	RV	BRCA	TCGA-E2-A15E-06A	RC3H2	chr9	125652591	-	MRRF	chr9	125033143	+
Frame-shit	ENST00000415061	ENST00000368354		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
Frame-shit	ENST00000415061	ENST00000368352		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
Frame-shit	ENST00000415061	ENST00000368347		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
5CDS-3UTR	ENST00000415061	ENST00000462780		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
5CDS-3UTR	ENST00000415061	ENST00000368349		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
5CDS-3UTR	ENST00000415061	ENST00000292254		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
Frame-shit	ENST00000396247	ENST00000368354		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
Frame-shit	ENST00000396247	ENST00000368352		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
Frame-shit	ENST00000396247	ENST00000368347		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
5CDS-3UTR	ENST00000396247	ENST00000462780		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
5CDS-3UTR	ENST00000396247	ENST00000368349		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
5CDS-3UTR	ENST00000396247	ENST00000292254		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
intron-3CDS	ENST00000592423	ENST00000368354		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
intron-3CDS	ENST00000592423	ENST00000368352		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
intron-3CDS	ENST00000592423	ENST00000368347		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
intron-3UTR	ENST00000592423	ENST00000462780		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
intron-3UTR	ENST00000592423	ENST00000368349		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
intron-3UTR	ENST00000592423	ENST00000292254		TCGA	RV	BRCA	TCGA-A8-A08F-01A	RDH13	chr19	55568021	-	RUSC1	chr1	155297941	+
Frame-shit	ENST00000367669	ENST00000367590		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RFWD2	chr1	176175708	-	XPR1	chr1	180849212	+
Frame-shit	ENST00000367669	ENST00000367589		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RFWD2	chr1	176175708	-	XPR1	chr1	180849212	+
5CDS-intron	ENST00000367669	ENST00000467345		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RFWD2	chr1	176175708	-	XPR1	chr1	180849212	+
Frame-shit	ENST00000308769	ENST00000367590		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RFWD2	chr1	176175708	-	XPR1	chr1	180849212	+
Frame-shit	ENST00000308769	ENST00000367589		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RFWD2	chr1	176175708	-	XPR1	chr1	180849212	+
5CDS-intron	ENST00000308769	ENST00000467345		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RFWD2	chr1	176175708	-	XPR1	chr1	180849212	+
Frame-shit	ENST00000376874	ENST00000444631		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
Frame-shit	ENST00000376874	ENST00000336133		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
5CDS-intron	ENST00000376874	ENST00000552080		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
Frame-shit	ENST00000340724	ENST00000444631		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
Frame-shit	ENST00000340724	ENST00000336133		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
5CDS-intron	ENST00000340724	ENST00000552080		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
Frame-shit	ENST00000544468	ENST00000444631		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
Frame-shit	ENST00000544468	ENST00000336133		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
5CDS-intron	ENST00000544468	ENST00000552080		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	RILPL1	chr12	123968727	-	SARNP	chr12	56151337	-
intron-3CDS	ENST00000534797	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000534797	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-intron	ENST00000534797	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000397614	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000397614	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-intron	ENST00000397614	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000397615	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000397615	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-intron	ENST00000397615	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000397604	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000397604	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-intron	ENST00000397604	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000533410	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000533410	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-intron	ENST00000533410	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000438658	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000438658	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-intron	ENST00000438658	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000354420	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000354420	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-intron	ENST00000354420	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000356187	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-3CDS	ENST00000356187	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
5UTR-intron	ENST00000356187	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000533592	ENST00000338675		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000533592	ENST00000382409		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
intron-intron	ENST00000533592	ENST00000525904		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	RNH1	chr11	507113	-	DEAF1	chr11	644654	-
In-frame	ENST00000399799	ENST00000379141		TCGA	RV	BRCA	TCGA-A8-A091-01A	ROCK1	chr18	18625253	-	LRIG3	chr12	59308117	-
In-frame	ENST00000399799	ENST00000320743		TCGA	RV	BRCA	TCGA-A8-A091-01A	ROCK1	chr18	18625253	-	LRIG3	chr12	59308117	-
5CDS-3UTR	ENST00000541979	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000541979	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000541979	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000541979	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000541979	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000465038	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000352853	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000371438	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000371436	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000576263	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000371432	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000359524	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000382778		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000351808		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000319980		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000537103		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-intron	ENST00000483243	ENST00000461115		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
Frame-shit	ENST00000370010	ENST00000315215		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000370010	ENST00000412232		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000370014	ENST00000315215		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000370014	ENST00000412232		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000447266	ENST00000315215		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000447266	ENST00000412232		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
intron-3CDS	ENST00000541192	ENST00000315215		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
intron-3CDS	ENST00000541192	ENST00000412232		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000327284	ENST00000315215		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
Frame-shit	ENST00000327284	ENST00000412232		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
intron-3CDS	ENST00000436928	ENST00000315215		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
intron-3CDS	ENST00000436928	ENST00000412232		TCGA	RV	BRCA	TCGA-D8-A27R-01A	SENP6	chr6	76373234	+	GPR124	chr8	37672414	+
5UTR-3CDS	ENST00000394947	ENST00000339362		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000394947	ENST00000261908		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000394947	ENST00000558964		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000394947	ENST00000560262		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3UTR	ENST00000394947	ENST00000560352		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000360439	ENST00000339362		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000360439	ENST00000261908		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000360439	ENST00000558964		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000360439	ENST00000560262		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3UTR	ENST00000360439	ENST00000560352		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000394949	ENST00000339362		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000394949	ENST00000261908		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000394949	ENST00000558964		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3CDS	ENST00000394949	ENST00000560262		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
intron-3UTR	ENST00000394949	ENST00000560352		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000567289	ENST00000339362		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000567289	ENST00000261908		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000567289	ENST00000558964		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000567289	ENST00000560262		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3UTR	ENST00000567289	ENST00000560352		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	SIN3A	chr15	75743764	-	NEO1	chr15	73528688	+
5UTR-3CDS	ENST00000222345	ENST00000540746		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	SIPA1L3	chr19	38519796	+	LSM14A	chr19	34706029	+
5UTR-3CDS	ENST00000222345	ENST00000544216		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	SIPA1L3	chr19	38519796	+	LSM14A	chr19	34706029	+
5UTR-3CDS	ENST00000222345	ENST00000433627		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	SIPA1L3	chr19	38519796	+	LSM14A	chr19	34706029	+
3UTR-3CDS	ENST00000476317	ENST00000540746		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	SIPA1L3	chr19	38519796	+	LSM14A	chr19	34706029	+
3UTR-3CDS	ENST00000476317	ENST00000544216		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	SIPA1L3	chr19	38519796	+	LSM14A	chr19	34706029	+
3UTR-3CDS	ENST00000476317	ENST00000433627		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	SIPA1L3	chr19	38519796	+	LSM14A	chr19	34706029	+
Frame-shit	ENST00000375394	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000375394	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000375394	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000375394	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000375394	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000375394	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-5UTR	ENST00000375394	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000375394	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000488648	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000488648	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000488648	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000488648	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000488648	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000488648	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000488648	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000488648	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000544581	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000544581	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000544581	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000544581	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000544581	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
Frame-shit	ENST00000544581	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-5UTR	ENST00000544581	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-intron	ENST00000544581	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000448219	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000448219	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000448219	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000448219	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000448219	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000448219	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000448219	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000448219	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000471547	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000471547	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000471547	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000471547	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000471547	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000471547	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000471547	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000471547	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000429465	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000429465	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000429465	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000429465	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000429465	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000429465	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000429465	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000429465	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000476338	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000476338	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000476338	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000476338	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000476338	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000476338	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000476338	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000476338	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000412823	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000412823	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000412823	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000412823	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000412823	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000412823	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000412823	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000412823	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000480914	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000480914	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000480914	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000480914	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000480914	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000480914	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000480914	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000480914	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000383336	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000383336	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000383336	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000383336	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000383336	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000383336	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000383336	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000383336	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000461360	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000461360	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000461360	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000461360	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000461360	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000461360	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000461360	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000461360	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000421789	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000421789	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000421789	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000421789	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000421789	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000421789	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000421789	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000421789	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000466463	ENST00000375742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000466463	ENST00000375755		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000466463	ENST00000375750		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000466463	ENST00000534153		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000466463	ENST00000375703		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-3CDS	ENST00000466463	ENST00000375740		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-5UTR	ENST00000466463	ENST00000431848		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000482280		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000395853		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000430216		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000486924		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000416549		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000456839		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000478326		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000458144		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000419269		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000414412		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000549746		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000427735		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000457742		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000497157		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000435700		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000436559		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000439816		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000460275		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000549604		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000441395		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000441401		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000578225		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000473342		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000448617		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000436192		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000436004		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000490125		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000457917		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000480915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000443040		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
intron-intron	ENST00000466463	ENST00000448169		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	SKIV2L	chr6	31934623	+	MSH5	chr6	31715164	+
5CDS-5UTR	ENST00000327367	ENST00000542035		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000327367	ENST00000544411		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000327367	ENST00000340912		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000327367	ENST00000544171		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000559092	ENST00000542035		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000559092	ENST00000544411		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000559092	ENST00000340912		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000559092	ENST00000544171		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000540846	ENST00000542035		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000540846	ENST00000544411		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000540846	ENST00000340912		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000540846	ENST00000544171		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000439724	ENST00000542035		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000439724	ENST00000544411		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000439724	ENST00000340912		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000439724	ENST00000544171		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000537194	ENST00000542035		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000537194	ENST00000544411		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000537194	ENST00000340912		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000537194	ENST00000544171		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	SMAD3	chr15	67358698	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000395601	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000395601	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000395601	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000517992	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000517992	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000517992	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5UTR-5UTR	ENST00000519177	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5UTR-5UTR	ENST00000519177	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5UTR-5UTR	ENST00000519177	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SNTB1	chr8	121705932	-	COL22A1	chr8	139715590	-
5CDS-intron	ENST00000336338	ENST00000367689		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000336338	ENST00000357444		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000336338	ENST00000251507		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000336338	ENST00000325589		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000367686		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000367687		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000347255		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000489615		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000478442		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000486220		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000336338	ENST00000392064		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000336338	ENST00000367688		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000492438	ENST00000367689		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000492438	ENST00000357444		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000492438	ENST00000251507		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000492438	ENST00000325589		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000367686		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000367687		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000347255		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000489615		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000478442		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000486220		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000492438	ENST00000392064		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000492438	ENST00000367688		TCGA	RV	BRCA	TCGA-E9-A1NI-01A	SPAG17	chr1	118693166	-	RABGAP1L	chr1	174926594	+
5UTR-3CDS	ENST00000393328	ENST00000326219		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393328	ENST00000352793		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393328	ENST00000436235		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393328	ENST00000398154		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393328	ENST00000334568		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393331	ENST00000326219		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393331	ENST00000352793		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393331	ENST00000436235		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393331	ENST00000398154		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000393331	ENST00000334568		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000347630	ENST00000326219		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000347630	ENST00000352793		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000347630	ENST00000436235		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000347630	ENST00000398154		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000347630	ENST00000334568		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000504102	ENST00000326219		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000504102	ENST00000352793		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000504102	ENST00000436235		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000504102	ENST00000398154		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000504102	ENST00000334568		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
intron-3CDS	ENST00000503676	ENST00000326219		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
intron-3CDS	ENST00000503676	ENST00000352793		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
intron-3CDS	ENST00000503676	ENST00000436235		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
intron-3CDS	ENST00000503676	ENST00000398154		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
intron-3CDS	ENST00000503676	ENST00000334568		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000513080	ENST00000326219		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000513080	ENST00000352793		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000513080	ENST00000436235		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000513080	ENST00000398154		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
5UTR-3CDS	ENST00000513080	ENST00000334568		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SPOP	chr17	47755295	-	TAC4	chr17	47921519	-
Frame-shit	ENST00000396037	ENST00000282881		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000396037	ENST00000539744		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000396037	ENST00000458174		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000396037	ENST00000445693		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000396037	ENST00000413632		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
In-frame	ENST00000539510	ENST00000282881		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000539510	ENST00000539744		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000539510	ENST00000458174		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000539510	ENST00000445693		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000539510	ENST00000413632		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000536558	ENST00000282881		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000536558	ENST00000539744		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000536558	ENST00000458174		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000536558	ENST00000445693		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000536558	ENST00000413632		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000404299	ENST00000282881		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000404299	ENST00000539744		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000404299	ENST00000458174		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000404299	ENST00000445693		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000404299	ENST00000413632		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000381424	ENST00000282881		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000381424	ENST00000539744		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000381424	ENST00000458174		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000381424	ENST00000445693		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000381424	ENST00000413632		TCGA	RV	BRCA	TCGA-AR-A2LM-01A	ST8SIA1	chr12	22401940	-	IFLTD1	chr12	25702480	-
5UTR-intron	ENST00000383202	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000383202	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000383202	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000383202	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000383202	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000236698	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000236698	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000236698	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000236698	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000236698	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000434713	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000434713	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000434713	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000434713	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000434713	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000480733	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000480733	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-intron	ENST00000480733	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000480733	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
5UTR-5UTR	ENST00000480733	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
intron-intron	ENST00000536929	ENST00000540180		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
intron-5UTR	ENST00000536929	ENST00000422000		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
intron-intron	ENST00000536929	ENST00000540344		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
intron-5UTR	ENST00000536929	ENST00000239830		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
intron-5UTR	ENST00000536929	ENST00000412006		TCGA	RV	BRCA	TCGA-AO-A129-01A	STAG1	chr3	136471037	-	CCDC77	chr12	514677	+
In-frame	ENST00000367255	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000367255	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000367255	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000356820	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000356820	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000356820	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
Frame-shit	ENST00000423061	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
Frame-shit	ENST00000423061	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000423061	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000448038	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000448038	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000448038	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000341594	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000341594	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000341594	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000265368	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
In-frame	ENST00000265368	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5CDS-intron	ENST00000265368	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000367253	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000367253	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367253	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000367248	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000367248	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000367248	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000413186	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000413186	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000413186	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000466159	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000466159	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000466159	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000539504	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000539504	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000539504	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000347037	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000347037	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000347037	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000354674	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000354674	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000354674	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000495090	ENST00000335762		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-3CDS	ENST00000495090	ENST00000399655		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000480911		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399644		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000344100		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399638		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399629		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399597		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000327702		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399621		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399649		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399637		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000402845		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399591		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399641		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000347598		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399606		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399595		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399601		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399603		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399634		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000399617		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000406454		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
intron-intron	ENST00000495090	ENST00000491104		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	SYNE1	chr6	152614723	-	CACNA1C	chr12	2778099	+
5UTR-3CDS	ENST00000357395	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5UTR-intron	ENST00000357395	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5UTR-intron	ENST00000357395	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5UTR-intron	ENST00000357395	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
Frame-shit	ENST00000358025	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000358025	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000358025	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000358025	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
Frame-shit	ENST00000344113	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000344113	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000344113	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000344113	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000341472	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000341472	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000341472	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000341472	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000356081	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000356081	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000356081	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000356081	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
Frame-shit	ENST00000554584	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000554584	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000554584	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
5CDS-intron	ENST00000554584	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000555002	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000555002	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000555002	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000555002	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000394768	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000394768	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000394768	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000394768	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000556725	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000556725	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000556725	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000556725	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000553455	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000553455	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000553455	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000553455	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000555022	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000555022	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000555022	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000555022	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000554805	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000554805	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000554805	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000554805	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000458046	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000458046	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000458046	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000458046	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000441438	ENST00000267484		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000441438	ENST00000395090		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000441438	ENST00000342503		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-intron	ENST00000441438	ENST00000557422		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	SYNE2	chr14	64434564	+	RTN1	chr14	60213199	-
intron-3CDS	ENST00000414318	ENST00000435706		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000414318	ENST00000264331		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000414318	ENST00000542520		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000414318	ENST00000540199		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-intron	ENST00000414318	ENST00000475717		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000253692	ENST00000435706		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000253692	ENST00000264331		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000253692	ENST00000542520		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000253692	ENST00000540199		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-intron	ENST00000253692	ENST00000475717		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
5UTR-3CDS	ENST00000429383	ENST00000435706		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
5UTR-3CDS	ENST00000429383	ENST00000264331		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
5UTR-3CDS	ENST00000429383	ENST00000542520		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
5UTR-3CDS	ENST00000429383	ENST00000540199		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
5UTR-intron	ENST00000429383	ENST00000475717		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000446818	ENST00000435706		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000446818	ENST00000264331		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000446818	ENST00000542520		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000446818	ENST00000540199		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-intron	ENST00000446818	ENST00000475717		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000429924	ENST00000435706		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000429924	ENST00000264331		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000429924	ENST00000542520		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-3CDS	ENST00000429924	ENST00000540199		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
intron-intron	ENST00000429924	ENST00000475717		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	TBC1D5	chr3	17783973	-	TOP2B	chr3	25642716	-
Frame-shit	ENST00000334274	ENST00000318881		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
Frame-shit	ENST00000334274	ENST00000396716		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
intron-3CDS	ENST00000530171	ENST00000318881		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
intron-3CDS	ENST00000530171	ENST00000396716		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
Frame-shit	ENST00000432887	ENST00000318881		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
Frame-shit	ENST00000432887	ENST00000396716		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
In-frame	ENST00000531632	ENST00000318881		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
In-frame	ENST00000531632	ENST00000396716		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
In-frame	ENST00000324357	ENST00000318881		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
In-frame	ENST00000324357	ENST00000396716		TCGA	RV	BRCA	TCGA-S3-AA17-01A	TCP11L1	chr11	33094199	+	SYT9	chr11	7324270	+
5CDS-3UTR	ENST00000371217	ENST00000371269		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-intron	ENST00000371217	ENST00000537443		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-intron	ENST00000371217	ENST00000535035		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-3UTR	ENST00000265993	ENST00000371269		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-intron	ENST00000265993	ENST00000537443		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-intron	ENST00000265993	ENST00000535035		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-3UTR	ENST00000430368	ENST00000371269		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-intron	ENST00000430368	ENST00000537443		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
5CDS-intron	ENST00000430368	ENST00000535035		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
intron-3UTR	ENST00000371209	ENST00000371269		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
intron-intron	ENST00000371209	ENST00000537443		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
intron-intron	ENST00000371209	ENST00000535035		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	TCTN3	chr10	97442408	-	DHCR24	chr1	55316918	-
intron-3CDS	ENST00000196169	ENST00000379589		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
intron-intron	ENST00000196169	ENST00000495922		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
intron-3CDS	ENST00000377894	ENST00000379589		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
intron-intron	ENST00000377894	ENST00000495922		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
Frame-shit	ENST00000535286	ENST00000379589		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
5CDS-intron	ENST00000535286	ENST00000495922		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
5UTR-3CDS	ENST00000377881	ENST00000379589		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
5UTR-intron	ENST00000377881	ENST00000495922		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
intron-3CDS	ENST00000463109	ENST00000379589		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
intron-intron	ENST00000463109	ENST00000495922		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	TDRD3	chr13	60971539	+	LHFP	chr13	39952663	-
5CDS-intron	ENST00000258991	ENST00000541920		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000258991	ENST00000300441		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000258991	ENST00000504392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000258991	ENST00000427954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000258991	ENST00000502667		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000258991	ENST00000506085		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000583097	ENST00000541920		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000583097	ENST00000300441		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000583097	ENST00000504392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000583097	ENST00000427954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000583097	ENST00000502667		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000583097	ENST00000506085		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000584379	ENST00000541920		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000584379	ENST00000300441		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000584379	ENST00000504392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000584379	ENST00000427954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000584379	ENST00000502667		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000584379	ENST00000506085		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
intron-intron	ENST00000581812	ENST00000541920		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
intron-intron	ENST00000581812	ENST00000300441		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
intron-intron	ENST00000581812	ENST00000504392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
intron-intron	ENST00000581812	ENST00000427954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
intron-intron	ENST00000581812	ENST00000502667		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
intron-intron	ENST00000581812	ENST00000506085		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TEX2	chr17	62248460	-	ACSF2	chr17	48538038	+
5CDS-5UTR	ENST00000330266	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000330266	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000330266	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000405975	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000405975	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000405975	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000415080	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000415080	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000415080	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000405006	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000405006	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
5CDS-5UTR	ENST00000405006	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000485353	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000485353	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000485353	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000402360	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000402360	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000402360	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000404790	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000404790	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000404790	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000403856	ENST00000476696		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000403856	ENST00000368099		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
intron-5UTR	ENST00000403856	ENST00000426543		TCGA	RV	BRCA	TCGA-E9-A22D-01A	THADA	chr2	43725972	-	CCDC19	chr1	159863095	-
In-frame	ENST00000409528	ENST00000233969		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
5CDS-intron	ENST00000409528	ENST00000469286		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
In-frame	ENST00000409173	ENST00000233969		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
5CDS-intron	ENST00000409173	ENST00000469286		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
In-frame	ENST00000412401	ENST00000233969		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
5CDS-intron	ENST00000412401	ENST00000469286		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
3UTR-3CDS	ENST00000486293	ENST00000233969		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
3UTR-intron	ENST00000486293	ENST00000469286		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TMEM182	chr2	103380886	+	SLC9A2	chr2	103274023	+
In-frame	ENST00000261455	ENST00000367006		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-intron	ENST00000261455	ENST00000452621		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-intron	ENST00000261455	ENST00000419091		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-intron	ENST00000261455	ENST00000367005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-3UTR	ENST00000261455	ENST00000526255		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
In-frame	ENST00000535273	ENST00000367006		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-intron	ENST00000535273	ENST00000452621		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-intron	ENST00000535273	ENST00000419091		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-intron	ENST00000535273	ENST00000367005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5CDS-3UTR	ENST00000535273	ENST00000526255		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5UTR-3CDS	ENST00000471937	ENST00000367006		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5UTR-intron	ENST00000471937	ENST00000452621		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5UTR-intron	ENST00000471937	ENST00000419091		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5UTR-intron	ENST00000471937	ENST00000367005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5UTR-3UTR	ENST00000471937	ENST00000526255		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	TMEM206	chr1	212583767	-	RCOR3	chr1	211486766	+
5UTR-3CDS	ENST00000450136	ENST00000298048		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000538311		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000536987		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000536860		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000545008		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000536329		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000541717		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000450136	ENST00000543751		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-3UTR	ENST00000450136	ENST00000487398		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-3CDS	ENST00000373983	ENST00000298048		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000538311		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000536987		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000536860		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000545008		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000536329		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000541717		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-5UTR	ENST00000373983	ENST00000543751		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
5UTR-3UTR	ENST00000373983	ENST00000487398		TCGA	RV	BRCA	TCGA-D8-A27R-01A	TRIM32	chr9	119449660	+	MELK	chr9	36607572	+
Frame-shit	ENST00000458659	ENST00000276570		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
5CDS-3UTR	ENST00000458659	ENST00000519330		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
intron-3CDS	ENST00000501704	ENST00000276570		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
intron-3UTR	ENST00000501704	ENST00000519330		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
intron-3CDS	ENST00000261489	ENST00000276570		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
intron-3UTR	ENST00000261489	ENST00000519330		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
5UTR-3CDS	ENST00000460842	ENST00000276570		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
5UTR-3UTR	ENST00000460842	ENST00000519330		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	TSC22D1	chr13	45147299	-	DNAJC5B	chr8	66988895	+
intron-intron	ENST00000267970	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000267970	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000346495	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000424443	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000561277	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000559494	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558745	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000556679		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000456570		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000477310		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000425368		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000497841		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000417261		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000427888		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000459734		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000455591		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000433503		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000474621		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000424727		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000436692		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000473139		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000399981		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000419920		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000465211		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000375455		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000489605		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000426239		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000419411		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
intron-intron	ENST00000558394	ENST00000460958		TCGA	RV	BRCA	TCGA-AC-A2FE-01A	TSPAN3	chr15	77338372	-	CFB	chr6	31913427	+
Frame-shit	ENST00000261497	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A09C-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000317025	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000317025	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000317025	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000317025	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000433384	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000433384	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000433384	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000527502	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000527502	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
5CDS-intron	ENST00000527502	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000316985	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000316985	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000316985	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000602723		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000400186		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000520002		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000602557		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000537824		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-3CDS	ENST00000525081	ENST00000542608		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000525081	ENST00000539096		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
intron-intron	ENST00000525081	ENST00000523387		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	WHSC1L1	chr8	38172165	-	CSMD1	chr8	2796266	-
Frame-shit	ENST00000242351	ENST00000272117		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000242351	ENST00000429204		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
5CDS-intron	ENST00000242351	ENST00000366784		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000464606	ENST00000272117		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000464606	ENST00000429204		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
5CDS-intron	ENST00000464606	ENST00000366784		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000471652	ENST00000272117		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000471652	ENST00000429204		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
5CDS-intron	ENST00000471652	ENST00000366784		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZC3HAV1	chr7	138749625	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000336755	ENST00000373996		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
Frame-shit	ENST00000336755	ENST00000313400		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
Frame-shit	ENST00000336755	ENST00000361209		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-5UTR	ENST00000336755	ENST00000361477		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000336755	ENST00000288520		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000336755	ENST00000341734		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000336755	ENST00000358637		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-3CDS	ENST00000534928	ENST00000373996		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-3CDS	ENST00000534928	ENST00000313400		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-3CDS	ENST00000534928	ENST00000361209		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-5UTR	ENST00000534928	ENST00000361477		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-intron	ENST00000534928	ENST00000288520		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-intron	ENST00000534928	ENST00000341734		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
intron-intron	ENST00000534928	ENST00000358637		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-3CDS	ENST00000461038	ENST00000373996		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-3CDS	ENST00000461038	ENST00000313400		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-3CDS	ENST00000461038	ENST00000361209		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-5UTR	ENST00000461038	ENST00000361477		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-intron	ENST00000461038	ENST00000288520		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-intron	ENST00000461038	ENST00000341734		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
3UTR-intron	ENST00000461038	ENST00000358637		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
Frame-shit	ENST00000322831	ENST00000373996		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
Frame-shit	ENST00000322831	ENST00000313400		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
Frame-shit	ENST00000322831	ENST00000361209		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-5UTR	ENST00000322831	ENST00000361477		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000322831	ENST00000288520		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000322831	ENST00000341734		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000322831	ENST00000358637		TCGA	RV	BRCA	TCGA-D8-A27R-01A	ZCCHC7	chr9	37126939	+	ASTN2	chr9	119626012	-
5UTR-3CDS	ENST00000291900	ENST00000372648		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000291900	ENST00000539497		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000291900	ENST00000466056		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000291900	ENST00000223865		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-3CDS	ENST00000494461	ENST00000372648		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000494461	ENST00000539497		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000494461	ENST00000466056		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000494461	ENST00000223865		TCGA	RV	BRCA	TCGA-E2-A158-01A	ZER1	chr9	131533860	-	TBC1D13	chr9	131550613	+
Frame-shit	ENST00000520356	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520356	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520356	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520356	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5CDS-intron	ENST00000520356	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520727	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520727	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520727	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520727	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5CDS-intron	ENST00000520727	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000429442	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000429442	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000429442	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000429442	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5CDS-intron	ENST00000429442	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000377838	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000377838	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000377838	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000377838	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5CDS-intron	ENST00000377838	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520214	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520214	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520214	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000520214	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5CDS-intron	ENST00000520214	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000523399	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000523399	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000523399	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
Frame-shit	ENST00000523399	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5CDS-intron	ENST00000523399	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000517307	ENST00000377869		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000517307	ENST00000220616		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000517307	ENST00000542445		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000517307	ENST00000519543		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
5UTR-intron	ENST00000517307	ENST00000522523		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	ZFAT	chr8	135577576	-	TG	chr8	134144056	+
In-frame	ENST00000344275	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000344275	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000344275	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000344275	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000442833	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000442833	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000442833	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000442833	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000280560	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000280560	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000280560	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000280560	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000540285	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000540285	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000540285	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000540285	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
intron-3CDS	ENST00000346530	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
intron-3CDS	ENST00000346530	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
intron-intron	ENST00000346530	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
intron-intron	ENST00000346530	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
Frame-shit	ENST00000392439	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
Frame-shit	ENST00000392439	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000392439	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000392439	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
Frame-shit	ENST00000442028	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
Frame-shit	ENST00000442028	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000442028	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000442028	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
Frame-shit	ENST00000542678	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
Frame-shit	ENST00000542678	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000542678	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5CDS-intron	ENST00000542678	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5UTR-3CDS	ENST00000541983	ENST00000424014		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5UTR-3CDS	ENST00000541983	ENST00000539951		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5UTR-intron	ENST00000541983	ENST00000537073		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
5UTR-intron	ENST00000541983	ENST00000543940		TCGA	RV	BRCA	TCGA-A7-A13D-01A	ABCB9	chr12	123428938	-	EIF2B1	chr12	124107308	-
In-frame	ENST00000298992	ENST00000545170		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
In-frame	ENST00000298992	ENST00000429774		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
In-frame	ENST00000298992	ENST00000393287		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000298992	ENST00000502250		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000298992	ENST00000503767		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000298992	ENST00000340660		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000298992	ENST00000532032		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-5UTR	ENST00000298992	ENST00000554491		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
In-frame	ENST00000435224	ENST00000545170		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
In-frame	ENST00000435224	ENST00000429774		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
In-frame	ENST00000435224	ENST00000393287		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000435224	ENST00000502250		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000435224	ENST00000503767		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000435224	ENST00000340660		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000435224	ENST00000532032		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
5CDS-5UTR	ENST00000435224	ENST00000554491		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000530814	ENST00000545170		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000530814	ENST00000429774		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000530814	ENST00000393287		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000530814	ENST00000502250		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000530814	ENST00000503767		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000530814	ENST00000340660		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000530814	ENST00000532032		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000530814	ENST00000554491		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000464611	ENST00000399082		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000399079		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000374943		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-5UTR	ENST00000464611	ENST00000434651		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000399084		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000460185		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000383121		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000548953		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000434886		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000430790		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000416192		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000399074		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000422950		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000486521		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000424530		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000433936		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000399088		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000399065		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000413089		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000476430		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000383247		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000399670		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000551970		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000415926		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000428219		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000419914		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000421888		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000424806		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000547498		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000493020		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000414518		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000549367		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000464611	ENST00000548083		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399082		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399079		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000374943		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-5UTR	ENST00000331789	ENST00000434651		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399084		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000460185		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000383121		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000548953		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000434886		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000430790		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000416192		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399074		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000422950		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000486521		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000424530		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000433936		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399088		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399065		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000413089		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000476430		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000383247		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000399670		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000551970		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000415926		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000428219		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000419914		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000421888		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000424806		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000547498		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000493020		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000414518		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000549367		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
intron-intron	ENST00000331789	ENST00000548083		TCGA	RV	BRCA	TCGA-OL-A66I-01A	ACTB	chr7	5567255	-	HLA-DQB1	chr6	32634461	-
5CDS-intron	ENST00000437682	ENST00000524394		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
5CDS-intron	ENST00000437682	ENST00000292562		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
5CDS-intron	ENST00000519315	ENST00000524394		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
5CDS-intron	ENST00000519315	ENST00000292562		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
5CDS-intron	ENST00000379907	ENST00000524394		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
5CDS-intron	ENST00000379907	ENST00000292562		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
intron-intron	ENST00000524303	ENST00000524394		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
intron-intron	ENST00000524303	ENST00000292562		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	ADAM32	chr8	39009067	+	ZNF251	chr8	145948767	-
Frame-shit	ENST00000487273	ENST00000376355		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000487273	ENST00000444838		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000487273	ENST00000376360		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000487273	ENST00000376354		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000487273	ENST00000339105		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000466936	ENST00000376355		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000466936	ENST00000444838		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000466936	ENST00000376360		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000466936	ENST00000376354		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000466936	ENST00000339105		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000481513	ENST00000376355		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000481513	ENST00000444838		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000481513	ENST00000376360		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000481513	ENST00000376354		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000481513	ENST00000339105		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000484143	ENST00000376355		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000484143	ENST00000444838		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000484143	ENST00000376360		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000484143	ENST00000376354		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000484143	ENST00000339105		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	ADAM9	chr8	38854679	+	CLYBL	chr13	100425078	+
5CDS-5UTR	ENST00000297323	ENST00000452339		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-5UTR	ENST00000297323	ENST00000430974		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-5UTR	ENST00000297323	ENST00000367895		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-5UTR	ENST00000297323	ENST00000355167		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-5UTR	ENST00000297323	ENST00000355286		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-5UTR	ENST00000297323	ENST00000531901		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-5UTR	ENST00000297323	ENST00000525849		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-intron	ENST00000297323	ENST00000431403		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-intron	ENST00000297323	ENST00000441015		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000452339		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000430974		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000367895		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000355167		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000355286		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000531901		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-5UTR	ENST00000432715	ENST00000525849		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-intron	ENST00000432715	ENST00000431403		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5UTR-intron	ENST00000432715	ENST00000441015		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	ADCY1	chr7	45614781	+	EYA4	chr6	133595854	+
5CDS-intron	ENST00000462833	ENST00000471236		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
5CDS-intron	ENST00000462833	ENST00000383657		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-intron	ENST00000491190	ENST00000471236		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-intron	ENST00000491190	ENST00000383657		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-intron	ENST00000309879	ENST00000471236		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-intron	ENST00000309879	ENST00000383657		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-intron	ENST00000470367	ENST00000471236		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-intron	ENST00000470367	ENST00000383657		TCGA	RV	BRCA	TCGA-A2-A25D-01A	ADCY5	chr3	123166259	-	PTPLB	chr3	123247321	-
intron-5UTR	ENST00000463381	ENST00000223293		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
intron-5UTR	ENST00000463381	ENST00000474605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000473312	ENST00000223293		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000473312	ENST00000474605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000479901	ENST00000223293		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000479901	ENST00000474605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000397238	ENST00000223293		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000397238	ENST00000474605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
intron-5UTR	ENST00000476375	ENST00000223293		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
intron-5UTR	ENST00000476375	ENST00000474605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
intron-5UTR	ENST00000335367	ENST00000223293		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
intron-5UTR	ENST00000335367	ENST00000474605		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	AGAP3	chr7	150784159	+	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000337714	ENST00000397861		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000337714	ENST00000397862		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000337714	ENST00000575658		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000337714	ENST00000487705		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000314126	ENST00000397861		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000314126	ENST00000397862		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000314126	ENST00000575658		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000314126	ENST00000487705		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000571629	ENST00000397861		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000571629	ENST00000397862		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000571629	ENST00000575658		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000571629	ENST00000487705		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000572557	ENST00000397861		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000572557	ENST00000397862		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000572557	ENST00000575658		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000572557	ENST00000487705		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000539273	ENST00000397861		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000539273	ENST00000397862		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-5UTR	ENST00000539273	ENST00000575658		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
5CDS-intron	ENST00000539273	ENST00000487705		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893371	-
In-frame	ENST00000370205	ENST00000354831		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
In-frame	ENST00000370205	ENST00000352171		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5CDS-5UTR	ENST00000370205	ENST00000485608		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5CDS-5UTR	ENST00000370205	ENST00000539524		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5CDS-5UTR	ENST00000370205	ENST00000544028		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5UTR-3CDS	ENST00000495856	ENST00000354831		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5UTR-3CDS	ENST00000495856	ENST00000352171		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5UTR-5UTR	ENST00000495856	ENST00000485608		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5UTR-5UTR	ENST00000495856	ENST00000539524		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
5UTR-5UTR	ENST00000495856	ENST00000544028		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ALG14	chr1	95530422	-	NRD1	chr1	52276076	-
Frame-shit	ENST00000372921	ENST00000255684		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
Frame-shit	ENST00000372921	ENST00000394618		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
Frame-shit	ENST00000372921	ENST00000340246		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5CDS-5UTR	ENST00000372921	ENST00000425950		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5CDS-5UTR	ENST00000372921	ENST00000415491		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
In-frame	ENST00000535178	ENST00000255684		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
In-frame	ENST00000535178	ENST00000394618		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
In-frame	ENST00000535178	ENST00000340246		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5CDS-5UTR	ENST00000535178	ENST00000425950		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5CDS-5UTR	ENST00000535178	ENST00000415491		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5UTR-3CDS	ENST00000492380	ENST00000255684		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5UTR-3CDS	ENST00000492380	ENST00000394618		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5UTR-3CDS	ENST00000492380	ENST00000340246		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5UTR-5UTR	ENST00000492380	ENST00000425950		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5UTR-5UTR	ENST00000492380	ENST00000415491		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	ANXA7	chr10	75156277	-	LGALS12	chr11	63276025	+
5UTR-3CDS	ENST00000370283	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-intron	ENST00000370283	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-3CDS	ENST00000547204	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-intron	ENST00000547204	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-3CDS	ENST00000519604	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-intron	ENST00000519604	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-3CDS	ENST00000519273	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-intron	ENST00000519273	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-3CDS	ENST00000370275	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-intron	ENST00000370275	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-3CDS	ENST00000353546	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5UTR-intron	ENST00000353546	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
intron-3CDS	ENST00000518794	ENST00000374273		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
intron-intron	ENST00000518794	ENST00000462896		TCGA	RV	BRCA	TCGA-A1-A0SQ-01A	ARFGAP1	chr20	61904272	+	SPAG4	chr20	34207117	+
5CDS-intron	ENST00000336498	ENST00000296582		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148593018	+
5CDS-intron	ENST00000336498	ENST00000508208		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148593018	+
intron-intron	ENST00000414545	ENST00000296582		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148593018	+
intron-intron	ENST00000414545	ENST00000508208		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148593018	+
intron-intron	ENST00000510076	ENST00000296582		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148593018	+
intron-intron	ENST00000510076	ENST00000508208		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148593018	+
5CDS-5UTR	ENST00000434513	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000434513	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000434513	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000434513	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000434513	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000434513	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000434513	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000434513	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000361221	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000361221	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000361221	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000361221	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000361221	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000361221	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000361221	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000361221	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000452522	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000452522	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000452522	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000452522	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000452522	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000452522	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000452522	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000452522	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375415	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375415	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375415	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375415	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375415	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375415	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375415	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375415	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-5UTR	ENST00000375420	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-intron	ENST00000375420	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-5UTR	ENST00000375420	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-intron	ENST00000375420	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-5UTR	ENST00000375420	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-5UTR	ENST00000375420	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-intron	ENST00000375420	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
intron-intron	ENST00000375420	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-5UTR	ENST00000469726	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-intron	ENST00000469726	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-5UTR	ENST00000469726	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-intron	ENST00000469726	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-5UTR	ENST00000469726	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-5UTR	ENST00000469726	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-intron	ENST00000469726	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
3UTR-intron	ENST00000469726	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375408	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375408	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375408	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375408	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375408	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000375408	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375408	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000375408	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000167825	ENST00000339438		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000167825	ENST00000438362		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000167825	ENST00000358528		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000167825	ENST00000261443		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000167825	ENST00000530886		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-5UTR	ENST00000167825	ENST00000369530		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000167825	ENST00000483407		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
5CDS-intron	ENST00000167825	ENST00000534699		TCGA	RV	BRCA	TCGA-B6-A402-01A	ARHGEF10L	chr1	18014242	+	CSDE1	chr1	115292828	-
Frame-shit	ENST00000368194	ENST00000354775		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
5CDS-5UTR	ENST00000368194	ENST00000538148		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
5CDS-5UTR	ENST00000368194	ENST00000461664		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-3CDS	ENST00000487682	ENST00000354775		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-5UTR	ENST00000487682	ENST00000538148		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-5UTR	ENST00000487682	ENST00000461664		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
Frame-shit	ENST00000361409	ENST00000354775		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
5CDS-5UTR	ENST00000361409	ENST00000538148		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
5CDS-5UTR	ENST00000361409	ENST00000461664		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-3CDS	ENST00000315174	ENST00000354775		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-5UTR	ENST00000315174	ENST00000538148		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-5UTR	ENST00000315174	ENST00000461664		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	ARHGEF11	chr1	157014091	-	ALDH9A1	chr1	165664634	-
intron-3CDS	ENST00000396441	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000396441	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000396441	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000396441	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000396441	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000396441	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000389707	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000401424	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000401424	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000401424	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000401424	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000401424	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000401424	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000389708	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000361003	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000403290	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403510	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403510	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403510	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403510	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403510	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000403510	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000403482	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000361905		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000527636		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000527575		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000334310		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000361985		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000497429	ENST00000526600		TCGA	RV	BRCA	TCGA-AO-A124-01A	ARNTL	chr11	13348014	+	TEAD1	chr11	12883797	+
5CDS-5UTR	ENST00000420843	ENST00000336898		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000420843	ENST00000376282		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000420843	ENST00000529095		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000526177		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000533784		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000420843	ENST00000529721		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000533805		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000443276		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000336898		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000376282		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000529095		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000526177		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000533784		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000529721		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000533805		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000443276		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000336898		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000376282		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000529095		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000526177		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000533784		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000529721		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000533805		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000443276		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
In-frame	ENST00000448504	ENST00000430627		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
In-frame	ENST00000448504	ENST00000447079		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
5CDS-intron	ENST00000448504	ENST00000559545		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
In-frame	ENST00000452479	ENST00000430627		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
In-frame	ENST00000452479	ENST00000447079		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
5CDS-intron	ENST00000452479	ENST00000559545		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
3UTR-3CDS	ENST00000582154	ENST00000430627		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
3UTR-3CDS	ENST00000582154	ENST00000447079		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
3UTR-intron	ENST00000582154	ENST00000559545		TCGA	RV	BRCA	TCGA-3C-AALI-01A	ARSG	chr17	66352945	+	CDK12	chr17	37667782	+
In-frame	ENST00000378954	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
5CDS-intron	ENST00000378954	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
5UTR-3CDS	ENST00000406122	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
5UTR-intron	ENST00000406122	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-3CDS	ENST00000402054	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-intron	ENST00000402054	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
5UTR-3CDS	ENST00000539122	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
5UTR-intron	ENST00000539122	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-3CDS	ENST00000332337	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-intron	ENST00000332337	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
In-frame	ENST00000419554	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
5CDS-intron	ENST00000419554	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-3CDS	ENST00000452935	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-intron	ENST00000452935	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-3CDS	ENST00000546051	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-intron	ENST00000546051	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-3CDS	ENST00000486927	ENST00000295373		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
intron-intron	ENST00000486927	ENST00000479345		TCGA	RV	BRCA	TCGA-E2-A14N-01A	ATL2	chr2	38604285	-	DHX57	chr2	39030057	-
Frame-shit	ENST00000393829	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
5CDS-intron	ENST00000393829	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
Frame-shit	ENST00000546249	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
5CDS-intron	ENST00000546249	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
Frame-shit	ENST00000537728	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
5CDS-intron	ENST00000537728	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
Frame-shit	ENST00000264649	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
5CDS-intron	ENST00000264649	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
Frame-shit	ENST00000585525	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
5CDS-intron	ENST00000585525	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
Frame-shit	ENST00000343619	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
5CDS-intron	ENST00000343619	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
intron-3CDS	ENST00000544137	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
intron-intron	ENST00000544137	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
intron-3CDS	ENST00000587797	ENST00000367942		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
intron-intron	ENST00000587797	ENST00000476437		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ATP6V0A1	chr17	40613029	+	ATF6	chr1	161832988	+
intron-intron	ENST00000483612	ENST00000354817		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
intron-intron	ENST00000483612	ENST00000527202		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
intron-intron	ENST00000483612	ENST00000532502		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000292401	ENST00000354817		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000292401	ENST00000527202		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000292401	ENST00000532502		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000411734	ENST00000354817		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000411734	ENST00000527202		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000411734	ENST00000532502		TCGA	RV	BRCA	TCGA-BH-A28Q-01A	AZGP1	chr7	99564354	-	FAR1	chr11	13744912	+
Frame-shit	ENST00000370693	ENST00000370706		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
Frame-shit	ENST00000370693	ENST00000357489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
5CDS-intron	ENST00000370693	ENST00000491832		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
5CDS-intron	ENST00000370693	ENST00000370708		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
5CDS-intron	ENST00000370693	ENST00000370702		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
5CDS-intron	ENST00000370693	ENST00000370710		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
5CDS-intron	ENST00000370693	ENST00000510989		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-3CDS	ENST00000545080	ENST00000370706		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-3CDS	ENST00000545080	ENST00000357489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-intron	ENST00000545080	ENST00000491832		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-intron	ENST00000545080	ENST00000370708		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-intron	ENST00000545080	ENST00000370702		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-intron	ENST00000545080	ENST00000370710		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
intron-intron	ENST00000545080	ENST00000510989		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	BAG2	chr6	57037608	+	ZNF451	chr6	57025882	+
Frame-shit	ENST00000589222	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000589222	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000589222	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000589222	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000589222	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000589222	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000589222	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000407086	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000407086	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000407086	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000407086	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000407086	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000407086	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000407086	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000390652	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000390652	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000390652	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000390652	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000390652	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000390652	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000390652	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000408905	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000408905	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000408905	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000408905	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000408905	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000408905	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000408905	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000588462	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000588462	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588462	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588462	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588462	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588462	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588462	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000585744	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000585744	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000585744	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000585744	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000585744	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000585744	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000585744	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000588874	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000588874	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588874	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588874	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588874	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588874	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
5CDS-intron	ENST00000588874	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-3CDS	ENST00000585812	ENST00000374092		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-3CDS	ENST00000585812	ENST00000374085		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-intron	ENST00000585812	ENST00000498084		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-intron	ENST00000585812	ENST00000397425		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-intron	ENST00000585812	ENST00000540053		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-intron	ENST00000585812	ENST00000541387		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
intron-intron	ENST00000585812	ENST00000306750		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	BCAS3	chr17	59112151	+	NFS1	chr20	34262539	-
Frame-shit	ENST00000589222	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000589222	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000589222	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000589222	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000589222	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000589222	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000589222	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000589222	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000407086	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000407086	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000390652	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000390652	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000408905	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000408905	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000588462	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000588462	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585744	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-intron	ENST00000585744	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000588874	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-intron	ENST00000588874	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000449833		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000409161		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000423696		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000338508		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000409530		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000449116		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000585812	ENST00000357171		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
intron-intron	ENST00000585812	ENST00000468619		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58824640	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000421745	ENST00000353782		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32738221	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000421745	ENST00000356608		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32738221	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000421745	ENST00000394747		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32738221	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000421745	ENST00000394748		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32738221	+	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000421745	ENST00000537808		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32738221	+	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000421745	ENST00000565329		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32738221	+	ABCC11	chr16	48211024	-
Frame-shit	ENST00000335221	ENST00000285238		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000335221	ENST00000515707		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000335221	ENST00000427699		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000335221	ENST00000510891		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
Frame-shit	ENST00000321892	ENST00000285238		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000321892	ENST00000515707		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000321892	ENST00000427699		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000321892	ENST00000510891		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
Frame-shit	ENST00000306378	ENST00000285238		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000306378	ENST00000515707		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000306378	ENST00000427699		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000306378	ENST00000510891		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
Frame-shit	ENST00000424123	ENST00000285238		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000424123	ENST00000515707		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000424123	ENST00000427699		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000424123	ENST00000510891		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
intron-3CDS	ENST00000577770	ENST00000285238		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
intron-intron	ENST00000577770	ENST00000515707		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
intron-intron	ENST00000577770	ENST00000427699		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
intron-intron	ENST00000577770	ENST00000510891		TCGA	RV	BRCA	TCGA-D8-A27N-01A	BPTF	chr17	65850878	+	ABCC3	chr17	48733193	+
intron-intron	ENST00000593699	ENST00000539909		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000286621		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000372734		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000541550		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000467840		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000539909		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000286621		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000372734		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000541550		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000467840		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000539909		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000286621		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000372734		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000541550		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000467840		TCGA	RV	BRCA	TCGA-A8-A09N-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-3CDS	ENST00000533988	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000533988	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000533988	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000533988	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000533988	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000533988	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000533988	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000533988	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000524490	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000524490	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000524490	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000524490	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000524490	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000524490	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000524490	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000524490	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000334736	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000334736	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000334736	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000334736	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000334736	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000334736	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000334736	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000334736	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000343878	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000343878	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000343878	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000343878	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000343878	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000343878	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000343878	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000343878	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000525959	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000525959	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000525959	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000525959	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000525959	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000525959	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000525959	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000525959	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000533248	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000533248	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000533248	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000533248	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000533248	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000533248	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000533248	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000533248	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000525919	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000525919	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525919	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525919	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525919	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525919	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000525919	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000525919	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000524767	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000524767	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000524767	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000524767	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000524767	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000524767	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000524767	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000524767	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000525038	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000525038	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525038	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525038	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525038	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000525038	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000525038	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000525038	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000529032	ENST00000356136		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
In-frame	ENST00000529032	ENST00000528420		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000529032	ENST00000533454		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000529032	ENST00000531818		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000529032	ENST00000532130		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000529032	ENST00000539288		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000529032	ENST00000525872		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000529032	ENST00000538870		TCGA	RV	BRCA	TCGA-A2-A0ES-01A	C11orf30	chr11	76207513	+	UVRAG	chr11	75715049	+
Frame-shit	ENST00000378847	ENST00000378036		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000378847	ENST00000477891		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000378847	ENST00000277632		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
3UTR-3CDS	ENST00000487696	ENST00000378036		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
3UTR-5UTR	ENST00000487696	ENST00000477891		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
3UTR-5UTR	ENST00000487696	ENST00000277632		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
Frame-shit	ENST00000378845	ENST00000378036		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000378845	ENST00000477891		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000378845	ENST00000277632		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	CAMK1D	chr10	12708809	+	FAM188A	chr10	15824225	-
intron-5UTR	ENST00000256343	ENST00000435962		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-5UTR	ENST00000256343	ENST00000340892		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-5UTR	ENST00000256343	ENST00000360594		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-5UTR	ENST00000256343	ENST00000556018		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-intron	ENST00000256343	ENST00000555302		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
Frame-shit	ENST00000283233	ENST00000359774		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000283233	ENST00000358147		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
In-frame	ENST00000283233	ENST00000392796		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000283233	ENST00000409990		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
In-frame	ENST00000283233	ENST00000409124		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000409187	ENST00000359774		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000409187	ENST00000358147		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000409187	ENST00000392796		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000409187	ENST00000409990		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000409187	ENST00000409124		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000536771	ENST00000359774		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000536771	ENST00000358147		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
In-frame	ENST00000536771	ENST00000392796		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
Frame-shit	ENST00000536771	ENST00000409990		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
In-frame	ENST00000536771	ENST00000409124		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000409889	ENST00000359774		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000409889	ENST00000358147		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000409889	ENST00000392796		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000409889	ENST00000409990		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000409889	ENST00000409124		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000491563	ENST00000359774		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000491563	ENST00000358147		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000491563	ENST00000392796		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000491563	ENST00000409990		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
intron-3CDS	ENST00000491563	ENST00000409124		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	CCDC148	chr2	159165945	-	WDSUB1	chr2	160092701	-
In-frame	ENST00000368911	ENST00000287218		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
In-frame	ENST00000368911	ENST00000373391		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
5CDS-3UTR	ENST00000368911	ENST00000463847		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000323817	ENST00000287218		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000323817	ENST00000373391		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000323817	ENST00000463847		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000413605	ENST00000287218		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000413605	ENST00000373391		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000413605	ENST00000463847		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000497709	ENST00000287218		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000497709	ENST00000373391		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000497709	ENST00000463847		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	CDK19	chr6	111136212	-	ZFAND3	chr6	38120011	+
Frame-shit	ENST00000430710	ENST00000369963		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
Frame-shit	ENST00000430710	ENST00000369950		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
In-frame	ENST00000399982	ENST00000369963		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
Frame-shit	ENST00000399982	ENST00000369950		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
Frame-shit	ENST00000557364	ENST00000369963		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
In-frame	ENST00000557364	ENST00000369950		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
intron-3CDS	ENST00000555962	ENST00000369963		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
intron-3CDS	ENST00000555962	ENST00000369950		TCGA	RV	BRCA	TCGA-PE-A5DD-01A	CHD8	chr14	21894287	-	IMPG1	chr6	76744504	-
In-frame	ENST00000294053	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000294053	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000294053	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000294053	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
In-frame	ENST00000538039	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000538039	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000538039	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000538039	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
In-frame	ENST00000437826	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000437826	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000437826	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000437826	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
In-frame	ENST00000340729	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000340729	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000340729	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000340729	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
In-frame	ENST00000543042	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000543042	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000543042	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000543042	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
In-frame	ENST00000445069	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000445069	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000445069	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
5CDS-intron	ENST00000445069	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-3CDS	ENST00000538021	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-intron	ENST00000538021	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-intron	ENST00000538021	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-intron	ENST00000538021	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-3CDS	ENST00000542555	ENST00000431530		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-intron	ENST00000542555	ENST00000380808		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-intron	ENST00000542555	ENST00000542829		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
intron-intron	ENST00000542555	ENST00000400542		TCGA	RV	BRCA	TCGA-AR-A24K-01A	CLPB	chr11	72069924	-	MTUS2	chr13	29674910	+
In-frame	ENST00000361530	ENST00000374332		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
In-frame	ENST00000361530	ENST00000263979		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000361530	ENST00000473891		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000361530	ENST00000374329		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
intron-3CDS	ENST00000480348	ENST00000374332		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
intron-3CDS	ENST00000480348	ENST00000263979		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
intron-intron	ENST00000480348	ENST00000473891		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
intron-intron	ENST00000480348	ENST00000374329		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
In-frame	ENST00000374253	ENST00000374332		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
In-frame	ENST00000374253	ENST00000263979		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000374253	ENST00000473891		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000374253	ENST00000374329		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
In-frame	ENST00000531191	ENST00000374332		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
In-frame	ENST00000531191	ENST00000263979		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000531191	ENST00000473891		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000531191	ENST00000374329		TCGA	RV	BRCA	TCGA-C8-A135-01A	CNKSR1	chr1	26511103	+	MAN1C1	chr1	26098148	+
In-frame	ENST00000347053	ENST00000404039		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000347053	ENST00000406326		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000347053	ENST00000377770		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000347053	ENST00000332007		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000347053	ENST00000496611		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000347053	ENST00000427557		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
In-frame	ENST00000297135	ENST00000404039		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000297135	ENST00000406326		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000297135	ENST00000377770		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000297135	ENST00000332007		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000297135	ENST00000496611		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000297135	ENST00000427557		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
In-frame	ENST00000393603	ENST00000404039		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000393603	ENST00000406326		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000393603	ENST00000377770		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000393603	ENST00000332007		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000393603	ENST00000496611		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000393603	ENST00000427557		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5UTR-3CDS	ENST00000475638	ENST00000404039		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5UTR-intron	ENST00000475638	ENST00000406326		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5UTR-intron	ENST00000475638	ENST00000377770		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5UTR-intron	ENST00000475638	ENST00000332007		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5UTR-intron	ENST00000475638	ENST00000496611		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5UTR-intron	ENST00000475638	ENST00000427557		TCGA	RV	BRCA	TCGA-BH-A0W7-01A	COG5	chr7	107052947	-	DPP6	chr7	154519477	+
5CDS-intron	ENST00000347053	ENST00000393500		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393494		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000403559		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000408937		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000350908		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393498		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393489		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393491		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000459666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000378237		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000360232		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000390668		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000462331		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393500		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393494		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000403559		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000408937		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000350908		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393498		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393489		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393491		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000459666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000378237		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000360232		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000390668		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000462331		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393500		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393494		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000403559		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000408937		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000350908		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393498		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393489		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393491		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000459666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000378237		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000360232		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000390668		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000462331		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393500		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393494		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000403559		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000408937		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000350908		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393498		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393489		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393491		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000459666		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000378237		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000360232		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000390668		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000462331		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-5UTR	ENST00000264613	ENST00000465804		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5CDS-intron	ENST00000264613	ENST00000360632		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5CDS-intron	ENST00000264613	ENST00000467467		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5CDS-intron	ENST00000264613	ENST00000474080		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5UTR-5UTR	ENST00000462336	ENST00000465804		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000462336	ENST00000360632		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000462336	ENST00000467467		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000462336	ENST00000474080		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	CP	chr3	148905839	-	WWTR1	chr3	149387678	-
In-frame	ENST00000382952	ENST00000382865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
In-frame	ENST00000382952	ENST00000511885		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000382952	ENST00000515357		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
Frame-shit	ENST00000290921	ENST00000382865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
Frame-shit	ENST00000290921	ENST00000511885		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000290921	ENST00000515357		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000510568	ENST00000382865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000510568	ENST00000511885		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
intron-intron	ENST00000510568	ENST00000515357		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
5UTR-3CDS	ENST00000515690	ENST00000382865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
5UTR-3CDS	ENST00000515690	ENST00000511885		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
5UTR-intron	ENST00000515690	ENST00000515357		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	CTBP1	chr4	1231971	-	POLN	chr4	2097660	-
5CDS-5UTR	ENST00000328194	ENST00000535714		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
5CDS-5UTR	ENST00000328194	ENST00000378919		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
5CDS-5UTR	ENST00000530044	ENST00000535714		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
5CDS-5UTR	ENST00000530044	ENST00000378919		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000527700	ENST00000535714		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000527700	ENST00000378919		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000526523	ENST00000535714		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000526523	ENST00000378919		TCGA	RV	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99514387	-
5CDS-5UTR	ENST00000376980	ENST00000315367		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000376980	ENST00000519516		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000376946	ENST00000315367		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000376946	ENST00000519516		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000483085	ENST00000315367		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000483085	ENST00000519516		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000371068	ENST00000512091		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000371068	ENST00000514591		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000371068	ENST00000511324		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000371068	ENST00000506700		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000371068	ENST00000509896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000371068	ENST00000545650		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000508693		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000507164		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000507625		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000514157		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000504896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000514996		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000506720		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000506746		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000508946		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000371068	ENST00000508078		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-5UTR	ENST00000491749	ENST00000512091		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-5UTR	ENST00000491749	ENST00000514591		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-5UTR	ENST00000491749	ENST00000511324		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-5UTR	ENST00000491749	ENST00000506700		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-5UTR	ENST00000491749	ENST00000509896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-5UTR	ENST00000491749	ENST00000545650		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000508693		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000507164		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000507625		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000514157		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000504896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000514996		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000506720		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000506746		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000508946		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
3UTR-intron	ENST00000491749	ENST00000508078		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-5UTR	ENST00000433625	ENST00000512091		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-5UTR	ENST00000433625	ENST00000514591		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-5UTR	ENST00000433625	ENST00000511324		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-5UTR	ENST00000433625	ENST00000506700		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-5UTR	ENST00000433625	ENST00000509896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-5UTR	ENST00000433625	ENST00000545650		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000508693		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000507164		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000507625		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000514157		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000504896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000514996		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000506720		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000506746		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000508946		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
intron-intron	ENST00000433625	ENST00000508078		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000538167	ENST00000512091		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000538167	ENST00000514591		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000538167	ENST00000511324		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000538167	ENST00000506700		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000538167	ENST00000509896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000538167	ENST00000545650		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000508693		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000507164		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000507625		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000514157		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000504896		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000514996		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000506720		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000506746		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000508946		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-intron	ENST00000538167	ENST00000508078		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	EFHC1	chr6	52288965	+	LPHN3	chr4	62362839	+
5CDS-5UTR	ENST00000272427	ENST00000474528		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000272427	ENST00000272433		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
5CDS-intron	ENST00000272427	ENST00000410065		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
intron-5UTR	ENST00000490919	ENST00000474528		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
intron-5UTR	ENST00000490919	ENST00000272433		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
intron-intron	ENST00000490919	ENST00000410065		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000410104	ENST00000474528		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000410104	ENST00000272433		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
5CDS-intron	ENST00000410104	ENST00000410065		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	EXOC6B	chr2	73052927	-	SFXN5	chr2	73198814	-
5UTR-3CDS	ENST00000295569	ENST00000415676		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	FAM19A4	chr3	68981391	-	CACNA2D3	chr3	54786626	+
5UTR-3CDS	ENST00000295569	ENST00000288197		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	FAM19A4	chr3	68981391	-	CACNA2D3	chr3	54786626	+
5UTR-3CDS	ENST00000295569	ENST00000474759		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	FAM19A4	chr3	68981391	-	CACNA2D3	chr3	54786626	+
5UTR-3CDS	ENST00000295569	ENST00000490478		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	FAM19A4	chr3	68981391	-	CACNA2D3	chr3	54786626	+
5UTR-intron	ENST00000295569	ENST00000478261		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	FAM19A4	chr3	68981391	-	CACNA2D3	chr3	54786626	+
Frame-shit	ENST00000370310	ENST00000370073		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000370310	ENST00000370071		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000370310	ENST00000370074		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000370310	ENST00000370070		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000370310	ENST00000370061		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000370310	ENST00000370072		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000370310	ENST00000542803		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000370310	ENST00000370068		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000370310	ENST00000370067		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000370310	ENST00000370065		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000370310	ENST00000370066		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
5CDS-intron	ENST00000370310	ENST00000477948		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	FAM69A	chr1	93426933	-	NTNG1	chr1	108023233	+
In-frame	ENST00000388995	ENST00000261647		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
In-frame	ENST00000388995	ENST00000486880		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
5CDS-3UTR	ENST00000388995	ENST00000497842		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
Frame-shit	ENST00000585154	ENST00000261647		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
Frame-shit	ENST00000585154	ENST00000486880		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
5CDS-3UTR	ENST00000585154	ENST00000497842		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
Frame-shit	ENST00000345041	ENST00000261647		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
Frame-shit	ENST00000345041	ENST00000486880		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
5CDS-3UTR	ENST00000345041	ENST00000497842		TCGA	RV	BRCA	TCGA-D8-A1JA-01A	FAM83G	chr17	18891560	-	TTC19	chr17	15928331	+
Frame-shit	ENST00000583610	ENST00000398532		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000583610	ENST00000577454		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000583610	ENST00000578648		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000583610	ENST00000579565		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000394294	ENST00000398532		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000394294	ENST00000577454		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000394294	ENST00000578648		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000394294	ENST00000579565		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000264658	ENST00000398532		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000264658	ENST00000577454		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000264658	ENST00000578648		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000264658	ENST00000579565		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000577399	ENST00000398532		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000577399	ENST00000577454		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000577399	ENST00000578648		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000577399	ENST00000579565		TCGA	RV	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000367972	ENST00000368147		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FCGR2A	chr1	161476381	+	SPTA1	chr1	158632735	-
5CDS-intron	ENST00000367972	ENST00000485680		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FCGR2A	chr1	161476381	+	SPTA1	chr1	158632735	-
Frame-shit	ENST00000271450	ENST00000368147		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FCGR2A	chr1	161476381	+	SPTA1	chr1	158632735	-
5CDS-intron	ENST00000271450	ENST00000485680		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FCGR2A	chr1	161476381	+	SPTA1	chr1	158632735	-
intron-3CDS	ENST00000486608	ENST00000368147		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FCGR2A	chr1	161476381	+	SPTA1	chr1	158632735	-
intron-intron	ENST00000486608	ENST00000485680		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FCGR2A	chr1	161476381	+	SPTA1	chr1	158632735	-
Frame-shit	ENST00000335255	ENST00000580974		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000335255	ENST00000299954		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000335255	ENST00000335257		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000335255	ENST00000581322		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000529652	ENST00000580974		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000529652	ENST00000299954		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000529652	ENST00000335257		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000529652	ENST00000581322		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	FOXK2	chr17	80545148	+	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000264899	ENST00000286648		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
intron-3CDS	ENST00000264899	ENST00000504952		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
intron-3CDS	ENST00000264899	ENST00000504730		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
intron-3CDS	ENST00000325942	ENST00000286648		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
intron-3CDS	ENST00000325942	ENST00000504952		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
intron-3CDS	ENST00000325942	ENST00000504730		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
Frame-shit	ENST00000264895	ENST00000286648		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
Frame-shit	ENST00000264895	ENST00000504952		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
Frame-shit	ENST00000264895	ENST00000504730		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	DCK	chr4	71888084	+
Frame-shit	ENST00000317568	ENST00000251472		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
Frame-shit	ENST00000317568	ENST00000591495		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
intron-3CDS	ENST00000531296	ENST00000251472		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
intron-3CDS	ENST00000531296	ENST00000591495		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
Frame-shit	ENST00000355991	ENST00000251472		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
Frame-shit	ENST00000355991	ENST00000591495		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
Frame-shit	ENST00000416776	ENST00000251472		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
Frame-shit	ENST00000416776	ENST00000591495		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	FRMD8	chr11	65164491	+	MAST1	chr19	12969176	+
5UTR-3CDS	ENST00000299293	ENST00000372141		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000299293	ENST00000404547		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000299293	ENST00000372142		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000299293	ENST00000404576		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000299293	ENST00000556918		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-intron	ENST00000299293	ENST00000537893		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-intron	ENST00000299293	ENST00000545131		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000549921	ENST00000372141		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000549921	ENST00000404547		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000549921	ENST00000372142		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000549921	ENST00000404576		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000549921	ENST00000556918		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-intron	ENST00000549921	ENST00000537893		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-intron	ENST00000549921	ENST00000545131		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-3CDS	ENST00000550389	ENST00000372141		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-3CDS	ENST00000550389	ENST00000404547		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-3CDS	ENST00000550389	ENST00000372142		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-3CDS	ENST00000550389	ENST00000404576		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-3CDS	ENST00000550389	ENST00000556918		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-intron	ENST00000550389	ENST00000537893		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-intron	ENST00000550389	ENST00000545131		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000397997	ENST00000372141		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000397997	ENST00000404547		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000397997	ENST00000372142		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000397997	ENST00000404576		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-3CDS	ENST00000397997	ENST00000556918		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-intron	ENST00000397997	ENST00000537893		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
5UTR-intron	ENST00000397997	ENST00000545131		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84498333	+
intron-3CDS	ENST00000503238	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000503238	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000503238	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000503238	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000503238	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000503238	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-3CDS	ENST00000358350	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000358350	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000358350	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000358350	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000358350	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000358350	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-3CDS	ENST00000537810	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000537810	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000537810	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000537810	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000537810	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000537810	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-3CDS	ENST00000264319	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000264319	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000264319	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000264319	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000264319	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000264319	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-3CDS	ENST00000507711	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000507711	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-5UTR	ENST00000507711	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000507711	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000507711	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
5UTR-intron	ENST00000507711	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-3CDS	ENST00000514783	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000514783	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000514783	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000514783	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000514783	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000514783	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-3CDS	ENST00000507873	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000507873	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000507873	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000507873	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000507873	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000507873	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-3CDS	ENST00000506685	ENST00000341164		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000506685	ENST00000536132		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000506685	ENST00000552579		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000506685	ENST00000547828		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000506685	ENST00000547121		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-intron	ENST00000506685	ENST00000546715		TCGA	RV	BRCA	TCGA-BH-A0HU-01A	FRYL	chr4	48712536	-	ZNF606	chr19	58500089	-
intron-5UTR	ENST00000489495	ENST00000310961		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
intron-5UTR	ENST00000489495	ENST00000370958		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
intron-intron	ENST00000489495	ENST00000035383		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
intron-intron	ENST00000489495	ENST00000415775		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
intron-intron	ENST00000489495	ENST00000565615		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-5UTR	ENST00000370768	ENST00000310961		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-5UTR	ENST00000370768	ENST00000370958		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000370768	ENST00000035383		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000370768	ENST00000415775		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000370768	ENST00000565615		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-5UTR	ENST00000370767	ENST00000310961		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-5UTR	ENST00000370767	ENST00000370958		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000370767	ENST00000035383		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000370767	ENST00000415775		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000370767	ENST00000565615		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-5UTR	ENST00000436586	ENST00000310961		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-5UTR	ENST00000436586	ENST00000370958		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000436586	ENST00000035383		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000436586	ENST00000415775		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
5CDS-intron	ENST00000436586	ENST00000565615		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	FUBP1	chr1	78432378	-	LRRC7	chr1	70144064	+
intron-3CDS	ENST00000489495	ENST00000370859		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
intron-3CDS	ENST00000489495	ENST00000370855		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
intron-5UTR	ENST00000489495	ENST00000535611		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
intron-5UTR	ENST00000489495	ENST00000469525		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
Frame-shit	ENST00000370768	ENST00000370859		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
Frame-shit	ENST00000370768	ENST00000370855		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
5CDS-5UTR	ENST00000370768	ENST00000535611		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
5CDS-5UTR	ENST00000370768	ENST00000469525		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
Frame-shit	ENST00000370767	ENST00000370859		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
Frame-shit	ENST00000370767	ENST00000370855		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
5CDS-5UTR	ENST00000370767	ENST00000535611		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
5CDS-5UTR	ENST00000370767	ENST00000469525		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
Frame-shit	ENST00000436586	ENST00000370859		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
Frame-shit	ENST00000436586	ENST00000370855		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
5CDS-5UTR	ENST00000436586	ENST00000535611		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
5CDS-5UTR	ENST00000436586	ENST00000469525		TCGA	RV	BRCA	TCGA-AR-A1AR-01A	FUBP1	chr1	78444569	-	SLC44A5	chr1	75766370	-
intron-3CDS	ENST00000360689	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000360689	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000360689	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000360689	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000360689	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000394586	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000394586	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000394586	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000394586	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000394586	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000557164	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000557164	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000557164	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000557164	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000557164	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000394585	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000394585	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000394585	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000394585	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000394585	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000358307	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000358307	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000358307	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000358307	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000358307	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000417683	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000417683	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000417683	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000417683	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000417683	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000554765	ENST00000371839		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000554765	ENST00000371838		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000554765	ENST00000371836		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000554765	ENST00000334103		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000554765	ENST00000497451		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65879932	+	AGBL4	chr1	49711536	-
Frame-shit	ENST00000425427	ENST00000409907		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000425427	ENST00000309507		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000425427	ENST00000431676		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
5CDS-intron	ENST00000425427	ENST00000465621		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000297107	ENST00000409907		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000297107	ENST00000309507		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000297107	ENST00000431676		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
5CDS-intron	ENST00000297107	ENST00000465621		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000377661	ENST00000409907		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000377661	ENST00000309507		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
Frame-shit	ENST00000377661	ENST00000431676		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
5CDS-intron	ENST00000377661	ENST00000465621		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-3CDS	ENST00000519544	ENST00000409907		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-3CDS	ENST00000519544	ENST00000309507		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-3CDS	ENST00000519544	ENST00000431676		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-intron	ENST00000519544	ENST00000465621		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-3CDS	ENST00000377657	ENST00000409907		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-3CDS	ENST00000377657	ENST00000309507		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-3CDS	ENST00000377657	ENST00000431676		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
intron-intron	ENST00000377657	ENST00000465621		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	GALNT10	chr5	153677639	+	IQCA1	chr2	237289279	-
In-frame	ENST00000370069	ENST00000370053		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	GMEB2	chr20	62223375	-	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000370069	ENST00000540534		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	GMEB2	chr20	62223375	-	STMN3	chr20	62275662	-
In-frame	ENST00000266068	ENST00000370053		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	GMEB2	chr20	62223375	-	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000266068	ENST00000540534		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	GMEB2	chr20	62223375	-	STMN3	chr20	62275662	-
Frame-shit	ENST00000370077	ENST00000370053		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	GMEB2	chr20	62223375	-	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000370077	ENST00000540534		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	GMEB2	chr20	62223375	-	STMN3	chr20	62275662	-
Frame-shit	ENST00000369851	ENST00000261448		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	GNAI3	chr1	110091460	+	CASQ2	chr1	116287533	-
Frame-shit	ENST00000369851	ENST00000456138		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	GNAI3	chr1	110091460	+	CASQ2	chr1	116287533	-
5CDS-intron	ENST00000369851	ENST00000488931		TCGA	RV	BRCA	TCGA-AR-A24Q-01A	GNAI3	chr1	110091460	+	CASQ2	chr1	116287533	-
Frame-shit	ENST00000434000	ENST00000331134		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
Frame-shit	ENST00000434000	ENST00000374747		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-5UTR	ENST00000434000	ENST00000539314		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-intron	ENST00000434000	ENST00000572760		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-intron	ENST00000434000	ENST00000573876		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-intron	ENST00000434000	ENST00000574344		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
In-frame	ENST00000591680	ENST00000331134		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
In-frame	ENST00000591680	ENST00000374747		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-5UTR	ENST00000591680	ENST00000539314		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-intron	ENST00000591680	ENST00000572760		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-intron	ENST00000591680	ENST00000573876		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5CDS-intron	ENST00000591680	ENST00000574344		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-3CDS	ENST00000586265	ENST00000331134		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-3CDS	ENST00000586265	ENST00000374747		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-5UTR	ENST00000586265	ENST00000539314		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-intron	ENST00000586265	ENST00000572760		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-intron	ENST00000586265	ENST00000573876		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-intron	ENST00000586265	ENST00000574344		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-3CDS	ENST00000592154	ENST00000331134		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-3CDS	ENST00000592154	ENST00000374747		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-5UTR	ENST00000592154	ENST00000539314		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-intron	ENST00000592154	ENST00000572760		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-intron	ENST00000592154	ENST00000573876		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-intron	ENST00000592154	ENST00000574344		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-3CDS	ENST00000588554	ENST00000331134		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-3CDS	ENST00000588554	ENST00000374747		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-5UTR	ENST00000588554	ENST00000539314		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-intron	ENST00000588554	ENST00000572760		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-intron	ENST00000588554	ENST00000573876		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
intron-intron	ENST00000588554	ENST00000574344		TCGA	RV	BRCA	TCGA-A8-A07B-01A	GPATCH8	chr17	42512433	-	NPLOC4	chr17	79596831	-
5UTR-3CDS	ENST00000290795	ENST00000389327		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-3CDS	ENST00000290795	ENST00000389328		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-3CDS	ENST00000290795	ENST00000438773		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-intron	ENST00000290795	ENST00000522504		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-3CDS	ENST00000355105	ENST00000389327		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-3CDS	ENST00000355105	ENST00000389328		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-3CDS	ENST00000355105	ENST00000438773		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5UTR-intron	ENST00000355105	ENST00000522504		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
intron-3CDS	ENST00000479235	ENST00000389327		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
intron-3CDS	ENST00000479235	ENST00000389328		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
intron-3CDS	ENST00000479235	ENST00000438773		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
intron-intron	ENST00000479235	ENST00000522504		TCGA	RV	BRCA	TCGA-C8-A8HQ-01A	GPBP1L1	chr1	46152084	-	TRAPPC9	chr8	141407844	-
5CDS-5UTR	ENST00000251808	ENST00000429989		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5CDS-5UTR	ENST00000251808	ENST00000481124		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5CDS-5UTR	ENST00000251808	ENST00000372164		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5CDS-5UTR	ENST00000251808	ENST00000372158		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5CDS-5UTR	ENST00000251808	ENST00000341863		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5CDS-5UTR	ENST00000251808	ENST00000372156		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5CDS-intron	ENST00000251808	ENST00000265450		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-5UTR	ENST00000395927	ENST00000429989		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-5UTR	ENST00000395927	ENST00000481124		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-5UTR	ENST00000395927	ENST00000372164		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-5UTR	ENST00000395927	ENST00000372158		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-5UTR	ENST00000395927	ENST00000341863		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-5UTR	ENST00000395927	ENST00000372156		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
5UTR-intron	ENST00000395927	ENST00000265450		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000517674	ENST00000429989		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000517674	ENST00000481124		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000517674	ENST00000372164		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000517674	ENST00000372158		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000517674	ENST00000341863		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000517674	ENST00000372156		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-intron	ENST00000517674	ENST00000265450		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	TSPAN14	chr10	82248973	+
intron-5UTR	ENST00000541565	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
intron-3UTR	ENST00000541565	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000413764	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000413764	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000391905	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000391905	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000537898	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000537898	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000545154	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000545154	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000545781	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000545781	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000308852	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000308852	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000261458	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000261458	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-5UTR	ENST00000367010	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000367010	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
intron-5UTR	ENST00000367009	ENST00000367012		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
intron-3UTR	ENST00000367009	ENST00000490620		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	HHAT	chr1	210578023	+	SERTAD4	chr1	210411289	+
5CDS-intron	ENST00000307602	ENST00000262146		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	HOOK3	chr8	42852780	+	MTFR1	chr8	66683182	+
5CDS-intron	ENST00000307602	ENST00000517944		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	HOOK3	chr8	42852780	+	MTFR1	chr8	66683182	+
5CDS-intron	ENST00000307602	ENST00000458689		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	HOOK3	chr8	42852780	+	MTFR1	chr8	66683182	+
intron-intron	ENST00000524839	ENST00000262146		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	HOOK3	chr8	42852780	+	MTFR1	chr8	66683182	+
intron-intron	ENST00000524839	ENST00000517944		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	HOOK3	chr8	42852780	+	MTFR1	chr8	66683182	+
intron-intron	ENST00000524839	ENST00000458689		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	HOOK3	chr8	42852780	+	MTFR1	chr8	66683182	+
Frame-shit	ENST00000355072	ENST00000251527		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	HTT	chr4	3201666	+	ESYT2	chr7	158566087	-
5CDS-intron	ENST00000355072	ENST00000497111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	HTT	chr4	3201666	+	ESYT2	chr7	158566087	-
5CDS-intron	ENST00000355072	ENST00000435514		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	HTT	chr4	3201666	+	ESYT2	chr7	158566087	-
intron-3CDS	ENST00000513806	ENST00000251527		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	HTT	chr4	3201666	+	ESYT2	chr7	158566087	-
intron-intron	ENST00000513806	ENST00000497111		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	HTT	chr4	3201666	+	ESYT2	chr7	158566087	-
intron-intron	ENST00000513806	ENST00000435514		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	HTT	chr4	3201666	+	ESYT2	chr7	158566087	-
Frame-shit	ENST00000455833	ENST00000375217		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
Frame-shit	ENST00000455833	ENST00000375226		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
Frame-shit	ENST00000455833	ENST00000375267		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
Frame-shit	ENST00000455833	ENST00000375254		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
5CDS-intron	ENST00000455833	ENST00000375225		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
5CDS-intron	ENST00000455833	ENST00000429347		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
5CDS-intron	ENST00000455833	ENST00000375224		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
5CDS-intron	ENST00000455833	ENST00000543981		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
5CDS-intron	ENST00000455833	ENST00000467272		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
5CDS-intron	ENST00000455833	ENST00000375218		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	IFFO2	chr1	19282162	-	UBR4	chr1	19411192	-
In-frame	ENST00000424272	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000424272	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000424272	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-intron	ENST00000424272	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409929	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409929	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409929	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-intron	ENST00000409929	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
intron-3CDS	ENST00000409589	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
intron-3CDS	ENST00000409589	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
intron-3CDS	ENST00000409589	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
intron-intron	ENST00000409589	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409329	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409329	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409329	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-intron	ENST00000409329	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409288	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409288	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000409288	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-intron	ENST00000409288	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000410023	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000410023	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000410023	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-intron	ENST00000410023	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000233946	ENST00000332549		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000233946	ENST00000393414		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
In-frame	ENST00000233946	ENST00000441002		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-intron	ENST00000233946	ENST00000485335		TCGA	RV	BRCA	TCGA-BH-A203-01A	IL1R1	chr2	102782741	+	IL1R2	chr2	102626024	+
5CDS-5UTR	ENST00000378993	ENST00000356790		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IL1RAPL1	chrX	28807542	+	MAGEB10	chrX	27835671	+
5CDS-5UTR	ENST00000302196	ENST00000356790		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IL1RAPL1	chrX	28807542	+	MAGEB10	chrX	27835671	+
In-frame	ENST00000262644	ENST00000372336		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	IMPAD1	chr8	57905758	-	ZCCHC24	chr10	81154196	-
Frame-shit	ENST00000262644	ENST00000372333		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	IMPAD1	chr8	57905758	-	ZCCHC24	chr10	81154196	-
In-frame	ENST00000268182	ENST00000560219		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000268182	ENST00000558723		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000268182	ENST00000341735		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
intron-3CDS	ENST00000560738	ENST00000560219		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000560738	ENST00000558723		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000560738	ENST00000341735		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
intron-3CDS	ENST00000560020	ENST00000560219		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000560020	ENST00000558723		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000560020	ENST00000341735		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	IQGAP1	chr15	90972898	+	MESP2	chr15	90321296	+
Frame-shit	ENST00000296181	ENST00000474629		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ITGB5	chr3	124487860	-	PARP14	chr3	122427037	+
5CDS-intron	ENST00000296181	ENST00000475640		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ITGB5	chr3	124487860	-	PARP14	chr3	122427037	+
5UTR-3CDS	ENST00000461306	ENST00000474629		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ITGB5	chr3	124487860	-	PARP14	chr3	122427037	+
5UTR-intron	ENST00000461306	ENST00000475640		TCGA	RV	BRCA	TCGA-AO-A03L-01A	ITGB5	chr3	124487860	-	PARP14	chr3	122427037	+
In-frame	ENST00000361566	ENST00000371817		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	KRT19	chr17	39679869	-	COL5A1	chr9	137533620	+
5CDS-intron	ENST00000361566	ENST00000464187		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	KRT19	chr17	39679869	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000552491	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552491	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552491	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-intron	ENST00000552491	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000547825	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000547825	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000547825	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-intron	ENST00000547825	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552823	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552823	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552823	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-intron	ENST00000552823	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
Frame-shit	ENST00000394943	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
Frame-shit	ENST00000394943	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
Frame-shit	ENST00000394943	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
5CDS-intron	ENST00000394943	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
Frame-shit	ENST00000341247	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
Frame-shit	ENST00000341247	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
Frame-shit	ENST00000341247	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
5CDS-intron	ENST00000341247	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552783	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552783	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552783	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-intron	ENST00000552783	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552909	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552909	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552909	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-intron	ENST00000552909	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552008	ENST00000389327		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552008	ENST00000389328		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000552008	ENST00000438773		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-intron	ENST00000552008	ENST00000522504		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	LIMA1	chr12	50642416	-	TRAPPC9	chr8	140999044	-
intron-3CDS	ENST00000395011	ENST00000287139		TCGA	RV	BRCA	TCGA-A8-A09N-01A	LRRC20	chr10	72100309	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000395010	ENST00000287139		TCGA	RV	BRCA	TCGA-A8-A09N-01A	LRRC20	chr10	72100309	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000355790	ENST00000287139		TCGA	RV	BRCA	TCGA-A8-A09N-01A	LRRC20	chr10	72100309	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000373224	ENST00000287139		TCGA	RV	BRCA	TCGA-A8-A09N-01A	LRRC20	chr10	72100309	-	NODAL	chr10	72195739	-
intron-3CDS	ENST00000358141	ENST00000287139		TCGA	RV	BRCA	TCGA-A8-A09N-01A	LRRC20	chr10	72100309	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000353533	ENST00000262442		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
Frame-shit	ENST00000353533	ENST00000454412		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
Frame-shit	ENST00000353533	ENST00000608377		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
5CDS-3UTR	ENST00000353533	ENST00000396001		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
5CDS-intron	ENST00000353533	ENST00000579828		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
Frame-shit	ENST00000415385	ENST00000262442		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
Frame-shit	ENST00000415385	ENST00000454412		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
Frame-shit	ENST00000415385	ENST00000608377		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
5CDS-3UTR	ENST00000415385	ENST00000396001		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
5CDS-intron	ENST00000415385	ENST00000579828		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
intron-3CDS	ENST00000581941	ENST00000262442		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
intron-3CDS	ENST00000581941	ENST00000454412		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
intron-3CDS	ENST00000581941	ENST00000608377		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
intron-3UTR	ENST00000581941	ENST00000396001		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
intron-intron	ENST00000581941	ENST00000579828		TCGA	RV	BRCA	TCGA-E2-A109-01A	MAP2K4	chr17	12032604	+	DNAH9	chr17	11865184	+
5CDS-intron	ENST00000253055	ENST00000299468		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
5CDS-intron	ENST00000253055	ENST00000369758		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
5CDS-intron	ENST00000253055	ENST00000609372		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
5CDS-intron	ENST00000253055	ENST00000308824		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
5CDS-3UTR	ENST00000253055	ENST00000266078		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
intron-intron	ENST00000593906	ENST00000299468		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
intron-intron	ENST00000593906	ENST00000369758		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
intron-intron	ENST00000593906	ENST00000609372		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
intron-intron	ENST00000593906	ENST00000308824		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
intron-3UTR	ENST00000593906	ENST00000266078		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	MAP3K10	chr19	40704462	+	PCMTD2	chr20	62904574	+
Frame-shit	ENST00000013125	ENST00000324679		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MAP4K5	chr14	50998660	-	SAV1	chr14	51111732	-
intron-3CDS	ENST00000557578	ENST00000324679		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	MAP4K5	chr14	50998660	-	SAV1	chr14	51111732	-
5CDS-5UTR	ENST00000397786	ENST00000258991		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000397786	ENST00000583097		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000397786	ENST00000584379		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
5CDS-intron	ENST00000397786	ENST00000581812		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
intron-5UTR	ENST00000580896	ENST00000258991		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
intron-5UTR	ENST00000580896	ENST00000583097		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
intron-5UTR	ENST00000580896	ENST00000584379		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
intron-intron	ENST00000580896	ENST00000581812		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MED13	chr17	60064368	-	TEX2	chr17	62291602	-
In-frame	ENST00000340080	ENST00000265846		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
5CDS-intron	ENST00000340080	ENST00000449296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
5CDS-intron	ENST00000340080	ENST00000539900		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
5CDS-5UTR	ENST00000340080	ENST00000463358		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
In-frame	ENST00000405785	ENST00000265846		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
5CDS-intron	ENST00000405785	ENST00000449296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
5CDS-intron	ENST00000405785	ENST00000539900		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
5CDS-5UTR	ENST00000405785	ENST00000463358		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
intron-3CDS	ENST00000461907	ENST00000265846		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
intron-intron	ENST00000461907	ENST00000449296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
intron-intron	ENST00000461907	ENST00000539900		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
intron-5UTR	ENST00000461907	ENST00000463358		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MIOS	chr7	7613827	+	ADAP1	chr7	975141	-
In-frame	ENST00000310999	ENST00000396037		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
In-frame	ENST00000310999	ENST00000539510		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000310999	ENST00000536558		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000310999	ENST00000404299		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000310999	ENST00000381424		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
In-frame	ENST00000430466	ENST00000396037		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
In-frame	ENST00000430466	ENST00000539510		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000430466	ENST00000536558		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000430466	ENST00000404299		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000430466	ENST00000381424		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5UTR-3CDS	ENST00000524576	ENST00000396037		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5UTR-3CDS	ENST00000524576	ENST00000539510		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5UTR-intron	ENST00000524576	ENST00000536558		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5UTR-intron	ENST00000524576	ENST00000404299		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5UTR-intron	ENST00000524576	ENST00000381424		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
Frame-shit	ENST00000329819	ENST00000396037		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
Frame-shit	ENST00000329819	ENST00000539510		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000329819	ENST00000536558		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000329819	ENST00000404299		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000329819	ENST00000381424		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	MRPL11	chr11	66204575	-	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000416426	ENST00000499247		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-5UTR	ENST00000416426	ENST00000268957		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000416426	ENST00000509385		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000284073	ENST00000499247		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-5UTR	ENST00000284073	ENST00000268957		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000284073	ENST00000509385		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000322684	ENST00000499247		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-5UTR	ENST00000322684	ENST00000268957		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000322684	ENST00000509385		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000442934	ENST00000499247		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-5UTR	ENST00000442934	ENST00000268957		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000442934	ENST00000509385		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000579180	ENST00000499247		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-5UTR	ENST00000579180	ENST00000268957		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
5CDS-intron	ENST00000579180	ENST00000509385		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
3UTR-intron	ENST00000579505	ENST00000499247		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
3UTR-5UTR	ENST00000579505	ENST00000268957		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
3UTR-intron	ENST00000579505	ENST00000509385		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48944963	-
Frame-shit	ENST00000580900	ENST00000361570		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000580900	ENST00000304494		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000580900	ENST00000579755		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000580900	ENST00000579122		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000578845		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000530628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000498124		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000498628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000494262		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000446177		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000479692		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000580900	ENST00000497750		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000580900	ENST00000470819		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000380172	ENST00000361570		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000380172	ENST00000304494		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000380172	ENST00000579755		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000380172	ENST00000579122		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000578845		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000530628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000498124		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000498628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000494262		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000446177		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000479692		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000380172	ENST00000497750		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000380172	ENST00000470819		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000460874	ENST00000361570		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000460874	ENST00000304494		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000460874	ENST00000579755		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000460874	ENST00000579122		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000578845		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000530628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000498124		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000498628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000494262		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000446177		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000479692		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000460874	ENST00000497750		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000460874	ENST00000470819		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-3CDS	ENST00000427788	ENST00000361570		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-3CDS	ENST00000427788	ENST00000304494		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-3CDS	ENST00000427788	ENST00000579755		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-3CDS	ENST00000427788	ENST00000579122		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000578845		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000530628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000498124		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000498628		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000494262		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000446177		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000479692		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-5UTR	ENST00000427788	ENST00000497750		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
3UTR-intron	ENST00000427788	ENST00000470819		TCGA	RV	BRCA	TCGA-A2-A04Q-01A	MTAP	chr9	21818201	+	CDKN2A	chr9	21971207	-
In-frame	ENST00000393223	ENST00000524717		TCGA	RV	BRCA	TCGA-E9-A244-01A	MTMR2	chr11	95598765	-	MAML2	chr11	95724887	-
Frame-shit	ENST00000346299	ENST00000524717		TCGA	RV	BRCA	TCGA-E9-A244-01A	MTMR2	chr11	95598765	-	MAML2	chr11	95724887	-
Frame-shit	ENST00000409459	ENST00000524717		TCGA	RV	BRCA	TCGA-E9-A244-01A	MTMR2	chr11	95598765	-	MAML2	chr11	95724887	-
In-frame	ENST00000352297	ENST00000524717		TCGA	RV	BRCA	TCGA-E9-A244-01A	MTMR2	chr11	95598765	-	MAML2	chr11	95724887	-
5UTR-3CDS	ENST00000484818	ENST00000524717		TCGA	RV	BRCA	TCGA-E9-A244-01A	MTMR2	chr11	95598765	-	MAML2	chr11	95724887	-
Frame-shit	ENST00000513610	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000513610	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000513610	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000513610	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000507288	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000507288	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000507288	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000507288	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000274203	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000274203	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000274203	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000274203	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000515803	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000515803	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000515803	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000515803	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000427430	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000427430	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000427430	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000427430	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000505695	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000505695	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000505695	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000505695	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000512061	ENST00000434067		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000512061	ENST00000415685		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000512061	ENST00000265074		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
intron-3CDS	ENST00000512061	ENST00000415167		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	MYO10	chr5	16877718	-	NPR3	chr5	32724804	+
Frame-shit	ENST00000205890	ENST00000321105		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
Frame-shit	ENST00000205890	ENST00000540524		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
Frame-shit	ENST00000205890	ENST00000542570		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
5CDS-intron	ENST00000205890	ENST00000582230		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000412324	ENST00000321105		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000412324	ENST00000540524		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000412324	ENST00000542570		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-intron	ENST00000412324	ENST00000582230		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
Frame-shit	ENST00000418233	ENST00000321105		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
Frame-shit	ENST00000418233	ENST00000540524		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
Frame-shit	ENST00000418233	ENST00000542570		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
5CDS-intron	ENST00000418233	ENST00000582230		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000585180	ENST00000321105		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000585180	ENST00000540524		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000585180	ENST00000542570		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-intron	ENST00000585180	ENST00000582230		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000451725	ENST00000321105		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000451725	ENST00000540524		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-3CDS	ENST00000451725	ENST00000542570		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
intron-intron	ENST00000451725	ENST00000582230		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	MYO15A	chr17	18077235	+	TOP3A	chr17	18178294	-
5CDS-5UTR	ENST00000354329	ENST00000245663		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000354329	ENST00000395104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000354329	ENST00000302995		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000354329	ENST00000480766		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000529578	ENST00000245663		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000529578	ENST00000395104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000529578	ENST00000302995		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
intron-intron	ENST00000529578	ENST00000480766		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000533112	ENST00000245663		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000533112	ENST00000395104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000533112	ENST00000302995		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000533112	ENST00000480766		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000531253	ENST00000245663		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000531253	ENST00000395104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000531253	ENST00000302995		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000531253	ENST00000480766		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000527372	ENST00000245663		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000527372	ENST00000395104		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000527372	ENST00000302995		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000527372	ENST00000480766		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	MYO18A	chr17	27492960	-	ZBTB46	chr20	62422143	-
5UTR-3CDS	ENST00000356056	ENST00000268097		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000356056	ENST00000566304		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000356056	ENST00000457859		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000356056	ENST00000567159		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000356056	ENST00000429918		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-intron	ENST00000356056	ENST00000567213		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000444904	ENST00000268097		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000444904	ENST00000566304		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000444904	ENST00000457859		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000444904	ENST00000567159		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000444904	ENST00000429918		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-intron	ENST00000444904	ENST00000567213		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000424560	ENST00000268097		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000424560	ENST00000566304		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000424560	ENST00000457859		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000424560	ENST00000567159		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000424560	ENST00000429918		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-intron	ENST00000424560	ENST00000567213		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000564571	ENST00000268097		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000564571	ENST00000566304		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000564571	ENST00000457859		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000564571	ENST00000567159		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000564571	ENST00000429918		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-intron	ENST00000564571	ENST00000567213		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000566885	ENST00000268097		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-3CDS	ENST00000566885	ENST00000566304		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000566885	ENST00000457859		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000566885	ENST00000567159		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-5UTR	ENST00000566885	ENST00000429918		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
5UTR-intron	ENST00000566885	ENST00000567213		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
intron-3CDS	ENST00000563542	ENST00000268097		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
intron-3CDS	ENST00000563542	ENST00000566304		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
intron-5UTR	ENST00000563542	ENST00000457859		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
intron-5UTR	ENST00000563542	ENST00000567159		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
intron-5UTR	ENST00000563542	ENST00000429918		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
intron-intron	ENST00000563542	ENST00000567213		TCGA	RV	BRCA	TCGA-LL-A5YP-01A	MYO9A	chr15	72410021	-	HEXA	chr15	72648958	-
In-frame	ENST00000454872	ENST00000467460		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
In-frame	ENST00000454872	ENST00000263962		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
In-frame	ENST00000454872	ENST00000392649		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
In-frame	ENST00000454872	ENST00000485199		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
In-frame	ENST00000454872	ENST00000468741		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
In-frame	ENST00000454872	ENST00000476138		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
5CDS-5UTR	ENST00000454872	ENST00000467440		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
5CDS-5UTR	ENST00000454872	ENST00000472994		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
5CDS-5UTR	ENST00000454872	ENST00000464614		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
5CDS-5UTR	ENST00000454872	ENST00000465751		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-3CDS	ENST00000473253	ENST00000467460		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-3CDS	ENST00000473253	ENST00000263962		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-3CDS	ENST00000473253	ENST00000392649		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-3CDS	ENST00000473253	ENST00000485199		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-3CDS	ENST00000473253	ENST00000468741		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-3CDS	ENST00000473253	ENST00000476138		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-5UTR	ENST00000473253	ENST00000467440		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-5UTR	ENST00000473253	ENST00000472994		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-5UTR	ENST00000473253	ENST00000464614		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
3UTR-5UTR	ENST00000473253	ENST00000465751		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	NAALADL2	chr3	175189546	+	PEX5L	chr3	179537764	-
5UTR-3CDS	ENST00000288986	ENST00000285208		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-3CDS	ENST00000288986	ENST00000543906		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-intron	ENST00000288986	ENST00000469959		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-intron	ENST00000288986	ENST00000486858		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-3CDS	ENST00000481752	ENST00000285208		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-3CDS	ENST00000481752	ENST00000543906		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-intron	ENST00000481752	ENST00000469959		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5UTR-intron	ENST00000481752	ENST00000486858		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
intron-3CDS	ENST00000469404	ENST00000285208		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
intron-3CDS	ENST00000469404	ENST00000543906		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
intron-intron	ENST00000469404	ENST00000469959		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
intron-intron	ENST00000469404	ENST00000486858		TCGA	RV	BRCA	TCGA-AO-A0J4-01A	NCK1	chr3	136581161	+	RAB6B	chr3	133560507	-
5CDS-5UTR	ENST00000452400	ENST00000311028		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000452400	ENST00000395923		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000452400	ENST00000220931		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000452400	ENST00000521599		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000452400	ENST00000522951		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000452400	ENST00000519508		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
5CDS-intron	ENST00000452400	ENST00000521371		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000267974	ENST00000311028		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000267974	ENST00000395923		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000267974	ENST00000220931		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000267974	ENST00000521599		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000267974	ENST00000522951		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000267974	ENST00000519508		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-intron	ENST00000267974	ENST00000521371		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000524223	ENST00000311028		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000524223	ENST00000395923		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000524223	ENST00000220931		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000524223	ENST00000521599		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000524223	ENST00000522951		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000524223	ENST00000519508		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-intron	ENST00000524223	ENST00000521371		TCGA	RV	BRCA	TCGA-BH-A203-01A	NCOA2	chr8	71126138	-	NCALD	chr8	102731876	-
intron-5UTR	ENST00000593786	ENST00000216951		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000593786	ENST00000541098		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000593786	ENST00000451957		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-5UTR	ENST00000374796	ENST00000216951		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000374796	ENST00000541098		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
intron-intron	ENST00000374796	ENST00000451957		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5UTR-5UTR	ENST00000359003	ENST00000216951		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5UTR-intron	ENST00000359003	ENST00000541098		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
5UTR-intron	ENST00000359003	ENST00000451957		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	NCOA6	chr20	33413275	-	GSS	chr20	33539663	-
Frame-shit	ENST00000598884	ENST00000437152		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6755326	-
Frame-shit	ENST00000598884	ENST00000245908		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6755326	-
5CDS-5UTR	ENST00000598884	ENST00000599563		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6755326	-
Frame-shit	ENST00000301457	ENST00000437152		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6755326	-
Frame-shit	ENST00000301457	ENST00000245908		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6755326	-
5CDS-5UTR	ENST00000301457	ENST00000599563		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6755326	-
5CDS-3UTR	ENST00000589123	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000589123	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000589123	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000346156	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000346156	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000346156	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000395111	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000395111	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000395111	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000586919	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000586919	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000586919	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000341919	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000341919	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000341919	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000590282	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000590282	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000590282	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000443272	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000443272	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
5CDS-3UTR	ENST00000443272	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000588839	ENST00000591997		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000588839	ENST00000251289		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
intron-3UTR	ENST00000588839	ENST00000587001		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NFIC	chr19	3425175	+	WDR18	chr19	989762	+
Frame-shit	ENST00000530878	ENST00000367843		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000530878	ENST00000432587		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000530878	ENST00000312263		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000530878	ENST00000367840		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
5CDS-intron	ENST00000530878	ENST00000470919		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000361897	ENST00000367843		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000361897	ENST00000432587		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000361897	ENST00000312263		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
Frame-shit	ENST00000361897	ENST00000367840		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
5CDS-intron	ENST00000361897	ENST00000470919		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000493151	ENST00000367843		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000493151	ENST00000432587		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000493151	ENST00000312263		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000493151	ENST00000367840		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-intron	ENST00000493151	ENST00000470919		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000454693	ENST00000367843		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000454693	ENST00000432587		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000454693	ENST00000312263		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-3CDS	ENST00000454693	ENST00000367840		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
intron-intron	ENST00000454693	ENST00000470919		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	NOS1AP	chr1	162124266	+	DCAF6	chr1	168012263	+
In-frame	ENST00000287437	ENST00000395601		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
In-frame	ENST00000287437	ENST00000517992		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
5CDS-5UTR	ENST00000287437	ENST00000519177		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
In-frame	ENST00000522563	ENST00000395601		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
In-frame	ENST00000522563	ENST00000517992		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
5CDS-5UTR	ENST00000522563	ENST00000519177		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
In-frame	ENST00000517315	ENST00000395601		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
In-frame	ENST00000517315	ENST00000517992		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
5CDS-5UTR	ENST00000517315	ENST00000519177		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
intron-3CDS	ENST00000521460	ENST00000395601		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
intron-3CDS	ENST00000521460	ENST00000517992		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
intron-5UTR	ENST00000521460	ENST00000519177		TCGA	RV	BRCA	TCGA-A8-A08B-01A	NSMCE2	chr8	126163519	+	SNTB1	chr8	121587465	-
Frame-shit	ENST00000351960	ENST00000381312		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000351960	ENST00000381310		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000351960	ENST00000381305		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-5UTR	ENST00000351960	ENST00000469464		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
Frame-shit	ENST00000358965	ENST00000381312		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000358965	ENST00000381310		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000358965	ENST00000381305		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-5UTR	ENST00000358965	ENST00000469464		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
Frame-shit	ENST00000393695	ENST00000381312		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000393695	ENST00000381310		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000393695	ENST00000381305		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
5CDS-5UTR	ENST00000393695	ENST00000469464		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
intron-3CDS	ENST00000543450	ENST00000381312		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
intron-intron	ENST00000543450	ENST00000381310		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
intron-intron	ENST00000543450	ENST00000381305		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
intron-5UTR	ENST00000543450	ENST00000469464		TCGA	RV	BRCA	TCGA-A8-A06U-01A	NUMA1	chr11	71734111	-	ADARB2	chr10	1263059	-
Frame-shit	ENST00000284719	ENST00000375258		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
5CDS-intron	ENST00000284719	ENST00000463392		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
5UTR-3CDS	ENST00000344357	ENST00000375258		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
5UTR-intron	ENST00000344357	ENST00000463392		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
Frame-shit	ENST00000428402	ENST00000375258		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
5CDS-intron	ENST00000428402	ENST00000463392		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
Frame-shit	ENST00000409546	ENST00000375258		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
5CDS-intron	ENST00000409546	ENST00000463392		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
intron-3CDS	ENST00000392560	ENST00000375258		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
intron-intron	ENST00000392560	ENST00000463392		TCGA	RV	BRCA	TCGA-BH-A1FH-01A	OLA1	chr2	175087761	-	METTL8	chr2	172217023	-
In-frame	ENST00000328827	ENST00000339766		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PAWR	chr12	80083509	-	CLEC2A	chr12	10069402	-
In-frame	ENST00000328827	ENST00000455827		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PAWR	chr12	80083509	-	CLEC2A	chr12	10069402	-
5UTR-3CDS	ENST00000547571	ENST00000339766		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PAWR	chr12	80083509	-	CLEC2A	chr12	10069402	-
5UTR-3CDS	ENST00000547571	ENST00000455827		TCGA	RV	BRCA	TCGA-D8-A27W-01A	PAWR	chr12	80083509	-	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000284770	ENST00000448662		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284770	ENST00000431808		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284770	ENST00000284776		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284770	ENST00000437304		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284770	ENST00000319471		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284770	ENST00000449407		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284770	ENST00000355634		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284770	ENST00000393528		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284770	ENST00000418609		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
5CDS-intron	ENST00000284770	ENST00000498125		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284771	ENST00000448662		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284771	ENST00000431808		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284771	ENST00000284776		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284771	ENST00000437304		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284771	ENST00000319471		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284771	ENST00000449407		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284771	ENST00000355634		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284771	ENST00000393528		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284771	ENST00000418609		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
5CDS-intron	ENST00000284771	ENST00000498125		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284767	ENST00000448662		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284767	ENST00000431808		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284767	ENST00000284776		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284767	ENST00000437304		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284767	ENST00000319471		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284767	ENST00000449407		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284767	ENST00000355634		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
In-frame	ENST00000284767	ENST00000393528		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000284767	ENST00000418609		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
5CDS-intron	ENST00000284767	ENST00000498125		TCGA	RV	BRCA	TCGA-E2-A14N-01A	PDLIM3	chr4	186456496	-	SORBS2	chr4	186508842	-
Frame-shit	ENST00000477593	ENST00000333188		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000477593	ENST00000507777		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000477593	ENST00000510491		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
intron-3CDS	ENST00000544716	ENST00000333188		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
intron-5UTR	ENST00000544716	ENST00000507777		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
intron-5UTR	ENST00000544716	ENST00000510491		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
In-frame	ENST00000289153	ENST00000333188		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000289153	ENST00000507777		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000289153	ENST00000510491		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138478015	-	COPB2	chr3	139102277	-
Frame-shit	ENST00000269554	ENST00000321639		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	PIP4K2B	chr17	36955519	-	TMEM132E	chr17	32953146	+
5UTR-3CDS	ENST00000311500	ENST00000321639		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	PIP4K2B	chr17	36955519	-	TMEM132E	chr17	32953146	+
In-frame	ENST00000354190	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000354190	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000354190	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
In-frame	ENST00000398492	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000398492	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000398492	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
In-frame	ENST00000227214	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000227214	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000227214	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
In-frame	ENST00000398494	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000398494	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000398494	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
In-frame	ENST00000543085	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000543085	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000543085	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
intron-3CDS	ENST00000544532	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
intron-intron	ENST00000544532	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
intron-intron	ENST00000544532	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
In-frame	ENST00000535129	ENST00000320580		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000535129	ENST00000529757		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000535129	ENST00000524815		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PLEKHB1	chr11	73362935	+	PACS1	chr11	65960957	+
Frame-shit	ENST00000300055	ENST00000379249		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000379264		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000379272		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000379255		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000296869		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000379246		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000379244		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000544770		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
Frame-shit	ENST00000300055	ENST00000543479		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000300055	ENST00000477640		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000300055	ENST00000357096		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000300055	ENST00000379240		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000300055	ENST00000431707		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000379249		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000379264		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000379272		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000379255		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000296869		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000379246		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000379244		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000544770		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000430628	ENST00000543479		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000430628	ENST00000477640		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000430628	ENST00000357096		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000430628	ENST00000379240		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
5CDS-intron	ENST00000430628	ENST00000431707		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	PLIN1	chr15	90212731	-	ACSL6	chr5	131321151	-
In-frame	ENST00000372389	ENST00000297153		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000372389	ENST00000434837		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000372389	ENST00000505425		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000372389	ENST00000510077		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000372344	ENST00000297153		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000372344	ENST00000434837		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000372344	ENST00000505425		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000372344	ENST00000510077		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000304004	ENST00000297153		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000304004	ENST00000434837		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
In-frame	ENST00000304004	ENST00000505425		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000304004	ENST00000510077		TCGA	RV	BRCA	TCGA-AC-A5XS-01A	POLR1C	chr6	43487576	+	MDGA1	chr6	37631882	-
Frame-shit	ENST00000413366	ENST00000225276		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	PRKCA	chr17	64492401	+	ST6GALNAC2	chr17	74574898	-
5CDS-5UTR	ENST00000413366	ENST00000586520		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	PRKCA	chr17	64492401	+	ST6GALNAC2	chr17	74574898	-
intron-3CDS	ENST00000583361	ENST00000225276		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	PRKCA	chr17	64492401	+	ST6GALNAC2	chr17	74574898	-
intron-5UTR	ENST00000583361	ENST00000586520		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	PRKCA	chr17	64492401	+	ST6GALNAC2	chr17	74574898	-
In-frame	ENST00000535781	ENST00000372733		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	PRPF6	chr20	62626445	+	SDC4	chr20	43964560	-
5CDS-intron	ENST00000535781	ENST00000537976		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	PRPF6	chr20	62626445	+	SDC4	chr20	43964560	-
Frame-shit	ENST00000418929	ENST00000246794		TCGA	RV	BRCA	TCGA-E2-A15E-01A	PRR12	chr19	50124879	+	PRRG2	chr19	50091754	+
5CDS-intron	ENST00000418929	ENST00000596700		TCGA	RV	BRCA	TCGA-E2-A15E-01A	PRR12	chr19	50124879	+	PRRG2	chr19	50091754	+
Frame-shit	ENST00000530639	ENST00000299413		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000530639	ENST00000532066		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000311599	ENST00000299413		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000311599	ENST00000532066		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000378867	ENST00000299413		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000378867	ENST00000532066		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
intron-3CDS	ENST00000389693	ENST00000299413		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
intron-3UTR	ENST00000389693	ENST00000532066		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000527487	ENST00000299413		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000527487	ENST00000532066		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	PRR5L	chr11	36424928	+	TRIM44	chr11	35747472	+
5CDS-5UTR	ENST00000368226	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368226	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368226	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368227	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368227	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368227	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000532331	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000532331	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000532331	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368213	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368213	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368213	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368210	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368210	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368210	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368215	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368215	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368215	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368207	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368207	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368207	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5UTR-5UTR	ENST00000524481	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5UTR-5UTR	ENST00000524481	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5UTR-5UTR	ENST00000524481	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000525459	ENST00000282470		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000525459	ENST00000418378		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000525459	ENST00000503414		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	PTPRK	chr6	128505577	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000368802	ENST00000368682		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000354650		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000229471		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000368667		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000368678		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000229470		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000356013		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000538466		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000476769		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000368682		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000354650		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000229471		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000368667		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000368678		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000229470		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000356013		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000538466		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000476769		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000368682		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000354650		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000229471		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000368667		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000368678		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000229470		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000356013		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000538466		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000476769		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000368682		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000354650		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000229471		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000368667		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000368678		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000229470		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000356013		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000538466		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000476769		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000368682		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000354650		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000229471		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000368667		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000368678		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000229470		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000356013		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000538466		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000476769		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	REV3L	chr6	111702528	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000529163	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000529163	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000529163	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000394920	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000394920	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000394920	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000527914	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000527914	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000527914	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000262584	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000262584	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000262584	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
intron-intron	ENST00000528957	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
intron-intron	ENST00000528957	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
intron-intron	ENST00000528957	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1RE-01A	RPL8	chr8	146015155	-	SNW1	chr14	78189203	-
3UTR-3CDS	ENST00000492220	ENST00000369130		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
3UTR-3CDS	ENST00000492220	ENST00000369128		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
3UTR-3CDS	ENST00000492220	ENST00000535106		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
3UTR-intron	ENST00000492220	ENST00000484306		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000401000	ENST00000369130		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000401000	ENST00000369128		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000401000	ENST00000535106		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
5CDS-intron	ENST00000401000	ENST00000484306		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000539519	ENST00000369130		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000539519	ENST00000369128		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000539519	ENST00000535106		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
5CDS-intron	ENST00000539519	ENST00000484306		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
intron-3CDS	ENST00000369067	ENST00000369130		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
intron-3CDS	ENST00000369067	ENST00000369128		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
intron-3CDS	ENST00000369067	ENST00000535106		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
intron-intron	ENST00000369067	ENST00000484306		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000369068	ENST00000369130		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000369068	ENST00000369128		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
In-frame	ENST00000369068	ENST00000535106		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
5CDS-intron	ENST00000369068	ENST00000484306		TCGA	RV	BRCA	TCGA-A7-A13D-01A	RPRD2	chr1	150418877	+	VPS45	chr1	150053424	+
Frame-shit	ENST00000361757	ENST00000590083		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
Frame-shit	ENST00000361757	ENST00000382477		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
Frame-shit	ENST00000361757	ENST00000215376		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
Frame-shit	ENST00000587024	ENST00000590083		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
Frame-shit	ENST00000587024	ENST00000382477		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
Frame-shit	ENST00000587024	ENST00000215376		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
intron-3CDS	ENST00000438103	ENST00000590083		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
intron-3CDS	ENST00000438103	ENST00000382477		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
intron-3CDS	ENST00000438103	ENST00000215376		TCGA	RV	BRCA	TCGA-GM-A2DD-01A	SBNO2	chr19	1147308	-	C19orf26	chr19	1233635	-
Frame-shit	ENST00000336505	ENST00000407228		TCGA	RV	BRCA	TCGA-E9-A3HO-01A	SCAI	chr9	127904912	-	TOX3	chr16	52484458	-
Frame-shit	ENST00000336505	ENST00000219746		TCGA	RV	BRCA	TCGA-E9-A3HO-01A	SCAI	chr9	127904912	-	TOX3	chr16	52484458	-
Frame-shit	ENST00000373549	ENST00000407228		TCGA	RV	BRCA	TCGA-E9-A3HO-01A	SCAI	chr9	127904912	-	TOX3	chr16	52484458	-
Frame-shit	ENST00000373549	ENST00000219746		TCGA	RV	BRCA	TCGA-E9-A3HO-01A	SCAI	chr9	127904912	-	TOX3	chr16	52484458	-
intron-3CDS	ENST00000487795	ENST00000407228		TCGA	RV	BRCA	TCGA-E9-A3HO-01A	SCAI	chr9	127904912	-	TOX3	chr16	52484458	-
intron-3CDS	ENST00000487795	ENST00000219746		TCGA	RV	BRCA	TCGA-E9-A3HO-01A	SCAI	chr9	127904912	-	TOX3	chr16	52484458	-
In-frame	ENST00000300061	ENST00000356083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SCNN1G	chr16	23224484	+	COL27A1	chr9	116924995	+
5CDS-intron	ENST00000300061	ENST00000477421		TCGA	RV	BRCA	TCGA-A2-A04T-01A	SCNN1G	chr16	23224484	+	COL27A1	chr9	116924995	+
In-frame	ENST00000371514	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371514	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371514	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371514	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371514	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5UTR-3CDS	ENST00000528311	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5UTR-3CDS	ENST00000528311	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5UTR-3CDS	ENST00000528311	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5UTR-intron	ENST00000528311	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5UTR-intron	ENST00000528311	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371509	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371509	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371509	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371509	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371509	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000407246	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000407246	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000407246	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000407246	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000407246	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371513	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371513	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371513	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371513	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371513	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000473584	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000473584	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000473584	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000473584	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000473584	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000430330	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000430330	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000430330	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000430330	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000430330	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000408941	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000408941	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000408941	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000408941	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000408941	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000435345	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000435345	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000435345	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000435345	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000435345	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000488965	ENST00000371522		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000488965	ENST00000358358		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000488965	ENST00000536120		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000488965	ENST00000541281		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
intron-intron	ENST00000488965	ENST00000480312		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	SCP2	chr1	53393137	+	ECHDC2	chr1	53364896	-
5CDS-5UTR	ENST00000247020	ENST00000416426		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000247020	ENST00000284073		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000247020	ENST00000322684		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000247020	ENST00000442934		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000247020	ENST00000579180		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000247020	ENST00000579505		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000592250	ENST00000416426		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000592250	ENST00000284073		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000592250	ENST00000322684		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000592250	ENST00000442934		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000592250	ENST00000579180		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000592250	ENST00000579505		TCGA	RV	BRCA	TCGA-3C-AALI-01A	SDF2	chr17	26982305	-	MSI2	chr17	55334459	+
In-frame	ENST00000265361	ENST00000406775		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
In-frame	ENST00000265361	ENST00000342771		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000265361	ENST00000403018		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000265361	ENST00000489774		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
Frame-shit	ENST00000544525	ENST00000406775		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
Frame-shit	ENST00000544525	ENST00000342771		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000544525	ENST00000403018		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000544525	ENST00000489774		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
Frame-shit	ENST00000419255	ENST00000406775		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
Frame-shit	ENST00000419255	ENST00000342771		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000419255	ENST00000403018		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000419255	ENST00000489774		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000536800	ENST00000406775		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000536800	ENST00000342771		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000536800	ENST00000403018		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000536800	ENST00000489774		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000487621	ENST00000406775		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000487621	ENST00000342771		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000487621	ENST00000403018		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000487621	ENST00000489774		TCGA	RV	BRCA	TCGA-B6-A0IC-01A	SEMA3C	chr7	80418622	-	AUTS2	chr7	69900738	+
In-frame	ENST00000328666	ENST00000392347		TCGA	RV	BRCA	TCGA-A7-A13D-01A	SIRT7	chr17	79872170	-	CCDC57	chr17	80059742	-
In-frame	ENST00000328666	ENST00000389641		TCGA	RV	BRCA	TCGA-A7-A13D-01A	SIRT7	chr17	79872170	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000328666	ENST00000392346		TCGA	RV	BRCA	TCGA-A7-A13D-01A	SIRT7	chr17	79872170	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000328666	ENST00000327026		TCGA	RV	BRCA	TCGA-A7-A13D-01A	SIRT7	chr17	79872170	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000328666	ENST00000392343		TCGA	RV	BRCA	TCGA-A7-A13D-01A	SIRT7	chr17	79872170	-	CCDC57	chr17	80059742	-
5CDS-3UTR	ENST00000336915	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	SKAP1	chr17	46423267	-	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000336915	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	SKAP1	chr17	46423267	-	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000336915	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	SKAP1	chr17	46423267	-	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000584924	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	SKAP1	chr17	46423267	-	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000584924	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	SKAP1	chr17	46423267	-	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000584924	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	SKAP1	chr17	46423267	-	YPEL2	chr17	57465688	+
5UTR-3CDS	ENST00000240095	ENST00000338368		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-3CDS	ENST00000240095	ENST00000314191		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-5UTR	ENST00000240095	ENST00000523565		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-3CDS	ENST00000359741	ENST00000338368		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-3CDS	ENST00000359741	ENST00000314191		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-5UTR	ENST00000359741	ENST00000523565		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-3CDS	ENST00000381237	ENST00000338368		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-3CDS	ENST00000381237	ENST00000314191		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5UTR-5UTR	ENST00000381237	ENST00000523565		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
intron-3CDS	ENST00000289952	ENST00000338368		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
intron-3CDS	ENST00000289952	ENST00000314191		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
intron-5UTR	ENST00000289952	ENST00000523565		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	SLC39A14	chr8	22224921	+	PRKDC	chr8	48762064	-
5CDS-5UTR	ENST00000316999	ENST00000555004		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-3UTR	ENST00000316999	ENST00000556728		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-intron	ENST00000316999	ENST00000421193		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-5UTR	ENST00000370452	ENST00000555004		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-3UTR	ENST00000370452	ENST00000556728		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-intron	ENST00000370452	ENST00000421193		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-5UTR	ENST00000370455	ENST00000555004		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-3UTR	ENST00000370455	ENST00000556728		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-intron	ENST00000370455	ENST00000421193		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-5UTR	ENST00000422334	ENST00000555004		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-3UTR	ENST00000422334	ENST00000556728		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
5CDS-intron	ENST00000422334	ENST00000421193		TCGA	RV	BRCA	TCGA-E2-A15P-01A	SMAP1	chr6	71442214	+	C14orf132	chr14	96552848	+
In-frame	ENST00000401884	ENST00000411486		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000401884	ENST00000441687		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000401884	ENST00000432087		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
5CDS-intron	ENST00000401884	ENST00000434039		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000342631	ENST00000411486		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000342631	ENST00000441687		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000342631	ENST00000432087		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
5CDS-intron	ENST00000342631	ENST00000434039		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000405547	ENST00000411486		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000405547	ENST00000441687		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000405547	ENST00000432087		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
5CDS-intron	ENST00000405547	ENST00000434039		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000310397	ENST00000411486		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000310397	ENST00000441687		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000310397	ENST00000432087		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
5CDS-intron	ENST00000310397	ENST00000434039		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
intron-3CDS	ENST00000469006	ENST00000411486		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
intron-3CDS	ENST00000469006	ENST00000441687		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
intron-3CDS	ENST00000469006	ENST00000432087		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
intron-intron	ENST00000469006	ENST00000434039		TCGA	RV	BRCA	TCGA-A8-A084-01A	SNED1	chr2	241938467	+	HJURP	chr2	234752929	-
In-frame	ENST00000331159	ENST00000264659		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SOCS7	chr17	36533668	+	SRCIN1	chr17	36705446	-
In-frame	ENST00000331159	ENST00000578925		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SOCS7	chr17	36533668	+	SRCIN1	chr17	36705446	-
5CDS-5UTR	ENST00000331159	ENST00000398579		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SOCS7	chr17	36533668	+	SRCIN1	chr17	36705446	-
In-frame	ENST00000577233	ENST00000264659		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SOCS7	chr17	36533668	+	SRCIN1	chr17	36705446	-
In-frame	ENST00000577233	ENST00000578925		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SOCS7	chr17	36533668	+	SRCIN1	chr17	36705446	-
5CDS-5UTR	ENST00000577233	ENST00000398579		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SOCS7	chr17	36533668	+	SRCIN1	chr17	36705446	-
In-frame	ENST00000336338	ENST00000298281		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	SPAG17	chr1	118727694	-	PCF11	chr11	82872369	+
intron-3CDS	ENST00000492438	ENST00000298281		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	SPAG17	chr1	118727694	-	PCF11	chr11	82872369	+
5CDS-5UTR	ENST00000419617	ENST00000353107		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000419617	ENST00000522439		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
5CDS-3UTR	ENST00000419617	ENST00000519765		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000523601	ENST00000353107		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000523601	ENST00000522439		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000523601	ENST00000519765		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000521768	ENST00000353107		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000521768	ENST00000522439		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000521768	ENST00000519765		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	STK3	chr8	99837743	-	POLR2K	chr8	101163575	+
Frame-shit	ENST00000357395	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
Frame-shit	ENST00000358025	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
Frame-shit	ENST00000344113	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000341472	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000356081	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
Frame-shit	ENST00000554584	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
Frame-shit	ENST00000555002	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
Frame-shit	ENST00000394768	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000556725	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000553455	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000555022	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000554805	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000458046	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
intron-3CDS	ENST00000441438	ENST00000325870		TCGA	RV	BRCA	TCGA-A8-A08Z-01A	SYNE2	chr14	64634357	+	DMRTA1	chr9	22451063	+
In-frame	ENST00000252996	ENST00000252997		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	GATA5	chr20	61040977	-
intron-3CDS	ENST00000609045	ENST00000252997		TCGA	RV	BRCA	TCGA-A7-A13D-01A	TAF4	chr20	60639507	-	GATA5	chr20	61040977	-
Frame-shit	ENST00000276692	ENST00000443356		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000276692	ENST00000603859		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000276692	ENST00000254627		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000276692	ENST00000262283		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000519548	ENST00000443356		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000519548	ENST00000603859		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000519548	ENST00000254627		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000519548	ENST00000262283		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000517678	ENST00000443356		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000517678	ENST00000603859		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000517678	ENST00000254627		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
In-frame	ENST00000517678	ENST00000262283		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521546	ENST00000443356		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521546	ENST00000603859		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521546	ENST00000254627		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521546	ENST00000262283		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000605953	ENST00000443356		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000605953	ENST00000603859		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000605953	ENST00000254627		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
Frame-shit	ENST00000605953	ENST00000262283		TCGA	RV	BRCA	TCGA-D8-A1JP-01A	TATDN1	chr8	125527987	-	OC90	chr8	133058130	-
5CDS-5UTR	ENST00000225235	ENST00000307450		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
5CDS-5UTR	ENST00000225235	ENST00000478953		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
5CDS-intron	ENST00000225235	ENST00000335628		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
5CDS-5UTR	ENST00000225235	ENST00000370635		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
intron-5UTR	ENST00000485048	ENST00000307450		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
intron-5UTR	ENST00000485048	ENST00000478953		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
intron-intron	ENST00000485048	ENST00000335628		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
intron-5UTR	ENST00000485048	ENST00000370635		TCGA	RV	BRCA	TCGA-AN-A0XN-01A	TBC1D12	chr10	96234540	+	MORN4	chr10	99379440	-
In-frame	ENST00000442267	ENST00000283131		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141560240	-	SMARCA5	chr4	144438508	+
5CDS-3UTR	ENST00000282120	ENST00000318789		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000282120	ENST00000475937		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000493089		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000484350		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000318779		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000491238		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000498215		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000468577		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000282120	ENST00000472382		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000377386	ENST00000318789		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000377386	ENST00000475937		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000493089		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000484350		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000318779		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000491238		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000498215		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000468577		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000377386	ENST00000472382		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000398263	ENST00000318789		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000398263	ENST00000475937		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000493089		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000484350		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000318779		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000491238		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000498215		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000468577		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000398263	ENST00000472382		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409232	ENST00000318789		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409232	ENST00000475937		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000493089		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000484350		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000318779		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000491238		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000498215		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000468577		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409232	ENST00000472382		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409015	ENST00000318789		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409015	ENST00000475937		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000493089		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000484350		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000318779		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000491238		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000498215		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000468577		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000409015	ENST00000472382		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000444342	ENST00000318789		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000444342	ENST00000475937		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000493089		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000484350		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000318779		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000491238		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000498215		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000468577		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000444342	ENST00000472382		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	TGOLN2	chr2	85545150	-	FOXP1	chr3	71007472	-
Frame-shit	ENST00000321639	ENST00000434000		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	TMEM132E	chr17	32908162	+	GPATCH8	chr17	42501860	-
Frame-shit	ENST00000321639	ENST00000591680		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	TMEM132E	chr17	32908162	+	GPATCH8	chr17	42501860	-
5CDS-5UTR	ENST00000321639	ENST00000586265		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	TMEM132E	chr17	32908162	+	GPATCH8	chr17	42501860	-
5CDS-intron	ENST00000321639	ENST00000592154		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	TMEM132E	chr17	32908162	+	GPATCH8	chr17	42501860	-
5CDS-intron	ENST00000321639	ENST00000588554		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	TMEM132E	chr17	32908162	+	GPATCH8	chr17	42501860	-
Frame-shit	ENST00000370203	ENST00000370256		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
Frame-shit	ENST00000370203	ENST00000260506		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
Frame-shit	ENST00000370203	ENST00000271234		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
Frame-shit	ENST00000370203	ENST00000604705		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
Frame-shit	ENST00000370203	ENST00000370253		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
intron-3CDS	ENST00000463375	ENST00000370256		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
intron-3CDS	ENST00000463375	ENST00000260506		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
intron-3CDS	ENST00000463375	ENST00000271234		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
intron-3CDS	ENST00000463375	ENST00000604705		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
intron-3CDS	ENST00000463375	ENST00000370253		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	TMEM56	chr1	95639445	+	FNBP1L	chr1	93965025	+
intron-3CDS	ENST00000537855	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000537855	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000537855	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000537855	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000537855	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
In-frame	ENST00000379096	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
In-frame	ENST00000379096	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000379096	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-5UTR	ENST00000379096	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-5UTR	ENST00000379096	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
In-frame	ENST00000518937	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
In-frame	ENST00000518937	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-intron	ENST00000518937	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-5UTR	ENST00000518937	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
5CDS-5UTR	ENST00000518937	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000519303	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000519303	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000519303	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000519303	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000519303	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000517427	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000517427	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000517427	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000517427	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000517427	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000520527	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000520527	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000520527	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000520527	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000520527	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000448733	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000448733	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000448733	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000448733	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000448733	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000379097	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000379097	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000379097	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000379097	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000379097	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000523395	ENST00000522695		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000523395	ENST00000524300		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000523558		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000521210		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000355780		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000519961		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000521727		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000521451		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000522509		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000517542		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-intron	ENST00000523395	ENST00000524104		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000523395	ENST00000522962		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-5UTR	ENST00000523395	ENST00000521419		TCGA	RV	BRCA	TCGA-E2-A2P5-01A	TPD52	chr8	81083660	-	STAU2	chr8	74601048	-
intron-3CDS	ENST00000541110	ENST00000542001		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000541110	ENST00000416670		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000541110	ENST00000321897		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000541110	ENST00000541562		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000541110	ENST00000476162		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000547340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000450090		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000549458		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000475174		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000550773		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000383540		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000552560		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000489340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000551709		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000415079		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000546854		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000462929		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000542001		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000416670		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000321897		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000541562		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000372917	ENST00000476162		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000547340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000450090		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000549458		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000475174		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000550773		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000383540		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000552560		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000489340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000551709		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000415079		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000546854		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000462929		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000542001		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000416670		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000321897		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000541562		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000372922	ENST00000476162		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000547340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000450090		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000549458		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000475174		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000550773		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000383540		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000552560		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000489340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000551709		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000415079		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000546854		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000462929		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000340840	ENST00000542001		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000340840	ENST00000416670		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000340840	ENST00000321897		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000340840	ENST00000541562		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3UTR	ENST00000340840	ENST00000476162		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000547340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000450090		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000549458		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000475174		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000550773		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000383540		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000552560		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000489340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000551709		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000415079		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000546854		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000340840	ENST00000462929		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000354325	ENST00000542001		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000354325	ENST00000416670		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000354325	ENST00000321897		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3CDS	ENST00000354325	ENST00000541562		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-3UTR	ENST00000354325	ENST00000476162		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000547340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000450090		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000549458		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000475174		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000550773		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000383540		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000552560		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000489340		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000551709		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000415079		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000546854		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
5UTR-intron	ENST00000354325	ENST00000462929		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42330685	-	VARS2	chr6	30893321	+
Frame-shit	ENST00000344204	ENST00000337318		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
Frame-shit	ENST00000344204	ENST00000392754		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
5CDS-intron	ENST00000344204	ENST00000280780		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
Frame-shit	ENST00000537187	ENST00000337318		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
Frame-shit	ENST00000537187	ENST00000392754		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
5CDS-intron	ENST00000537187	ENST00000280780		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
Frame-shit	ENST00000509967	ENST00000337318		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
Frame-shit	ENST00000509967	ENST00000392754		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
5CDS-intron	ENST00000509967	ENST00000280780		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
intron-3CDS	ENST00000515710	ENST00000337318		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
intron-3CDS	ENST00000515710	ENST00000392754		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
intron-intron	ENST00000515710	ENST00000280780		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
intron-3CDS	ENST00000344135	ENST00000337318		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
intron-3CDS	ENST00000344135	ENST00000392754		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
intron-intron	ENST00000344135	ENST00000280780		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	TRIO	chr5	14336836	+	FAM53B	chr10	126312173	-
Frame-shit	ENST00000373290	ENST00000542569		TCGA	RV	BRCA	TCGA-E9-A244-01A	TSPAN15	chr10	71211446	+	SAMD8	chr10	76924403	+
Frame-shit	ENST00000373290	ENST00000372687		TCGA	RV	BRCA	TCGA-E9-A244-01A	TSPAN15	chr10	71211446	+	SAMD8	chr10	76924403	+
Frame-shit	ENST00000373290	ENST00000372690		TCGA	RV	BRCA	TCGA-E9-A244-01A	TSPAN15	chr10	71211446	+	SAMD8	chr10	76924403	+
intron-3CDS	ENST00000459981	ENST00000542569		TCGA	RV	BRCA	TCGA-E9-A244-01A	TSPAN15	chr10	71211446	+	SAMD8	chr10	76924403	+
intron-3CDS	ENST00000459981	ENST00000372687		TCGA	RV	BRCA	TCGA-E9-A244-01A	TSPAN15	chr10	71211446	+	SAMD8	chr10	76924403	+
intron-3CDS	ENST00000459981	ENST00000372690		TCGA	RV	BRCA	TCGA-E9-A244-01A	TSPAN15	chr10	71211446	+	SAMD8	chr10	76924403	+
5CDS-5UTR	ENST00000361658	ENST00000590550		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000361658	ENST00000434436		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000361658	ENST00000592012		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000361658	ENST00000156825		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000361658	ENST00000585967		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000395544	ENST00000590550		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000395544	ENST00000434436		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000395544	ENST00000592012		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000395544	ENST00000156825		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5CDS-5UTR	ENST00000395544	ENST00000585967		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
intron-5UTR	ENST00000580130	ENST00000590550		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
intron-5UTR	ENST00000580130	ENST00000434436		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
intron-5UTR	ENST00000580130	ENST00000592012		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
intron-5UTR	ENST00000580130	ENST00000156825		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
intron-5UTR	ENST00000580130	ENST00000585967		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19746434	-	MBD3	chr19	1585213	-
5UTR-3CDS	ENST00000317025	ENST00000357731		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000317025	ENST00000306821		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000317025	ENST00000434200		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-5UTR	ENST00000317025	ENST00000467479		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000433384	ENST00000357731		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000433384	ENST00000306821		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000433384	ENST00000434200		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-5UTR	ENST00000433384	ENST00000467479		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000527502	ENST00000357731		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000527502	ENST00000306821		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000527502	ENST00000434200		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-5UTR	ENST00000527502	ENST00000467479		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000316985	ENST00000357731		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000316985	ENST00000306821		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000316985	ENST00000434200		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-5UTR	ENST00000316985	ENST00000467479		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
intron-3CDS	ENST00000525081	ENST00000357731		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
intron-3CDS	ENST00000525081	ENST00000306821		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
intron-3CDS	ENST00000525081	ENST00000434200		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
intron-5UTR	ENST00000525081	ENST00000467479		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	WHSC1L1	chr8	38239317	-	NEGR1	chr1	72241980	-
5UTR-3CDS	ENST00000353703	ENST00000310343		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-3CDS	ENST00000353703	ENST00000524655		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-intron	ENST00000353703	ENST00000392657		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-intron	ENST00000353703	ENST00000527272		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
3UTR-3CDS	ENST00000479421	ENST00000310343		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
3UTR-3CDS	ENST00000479421	ENST00000524655		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
3UTR-intron	ENST00000479421	ENST00000392657		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
3UTR-intron	ENST00000479421	ENST00000527272		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-3CDS	ENST00000372839	ENST00000310343		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-3CDS	ENST00000372839	ENST00000524655		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-intron	ENST00000372839	ENST00000392657		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5UTR-intron	ENST00000372839	ENST00000527272		TCGA	RV	BRCA	TCGA-D8-A1XO-01A	YWHAB	chr20	43514527	+	ARHGAP32	chr11	128963602	-
5CDS-5UTR	ENST00000602149	ENST00000421832		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	ZNF549	chr19	58046638	+	CTU1	chr19	51607847	-
5CDS-5UTR	ENST00000240719	ENST00000421832		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	ZNF549	chr19	58046638	+	CTU1	chr19	51607847	-
5CDS-5UTR	ENST00000376233	ENST00000421832		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	ZNF549	chr19	58046638	+	CTU1	chr19	51607847	-
intron-5UTR	ENST00000594943	ENST00000421832		TCGA	RV	BRCA	TCGA-B6-A0I2-01A	ZNF549	chr19	58046638	+	CTU1	chr19	51607847	-
In-frame	ENST00000314531	ENST00000262134		TCGA	RV	BRCA	TCGA-D8-A1XL-01A	ZNF77	chr19	2944836	-	LPCAT2	chr16	55559420	+
5CDS-intron	ENST00000314531	ENST00000565056		TCGA	RV	BRCA	TCGA-D8-A1XL-01A	ZNF77	chr19	2944836	-	LPCAT2	chr16	55559420	+
5UTR-3CDS	ENST00000588050	ENST00000262134		TCGA	RV	BRCA	TCGA-D8-A1XL-01A	ZNF77	chr19	2944836	-	LPCAT2	chr16	55559420	+
5UTR-intron	ENST00000588050	ENST00000565056		TCGA	RV	BRCA	TCGA-D8-A1XL-01A	ZNF77	chr19	2944836	-	LPCAT2	chr16	55559420	+
Frame-shit	ENST00000358849	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000358849	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000358849	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000358849	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000358849	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
In-frame	ENST00000542328	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
In-frame	ENST00000542328	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000542328	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000542328	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000542328	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000297504	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000297504	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000297504	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000297504	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000297504	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000356058	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000356058	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000356058	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000356058	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000356058	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000498578	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000498578	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000498578	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000498578	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000498578	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477719	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477719	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477719	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477719	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477719	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477092	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477092	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477092	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477092	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477092	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-3CDS	ENST00000493338	ENST00000297494		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-3CDS	ENST00000493338	ENST00000461406		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-intron	ENST00000493338	ENST00000484524		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-intron	ENST00000493338	ENST00000467517		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-intron	ENST00000493338	ENST00000477227		TCGA	RV	BRCA	TCGA-AC-A3TN-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
In-frame	ENST00000352732	ENST00000439576		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000352732	ENST00000558207		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000352732	ENST00000559004		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000352732	ENST00000352105		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000352732	ENST00000561243		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
In-frame	ENST00000565973	ENST00000439576		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000565973	ENST00000558207		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000565973	ENST00000559004		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000565973	ENST00000352105		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000565973	ENST00000561243		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
In-frame	ENST00000355100	ENST00000439576		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000355100	ENST00000558207		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000355100	ENST00000559004		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000355100	ENST00000352105		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
5CDS-intron	ENST00000355100	ENST00000561243		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
intron-3CDS	ENST00000562254	ENST00000439576		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
intron-intron	ENST00000562254	ENST00000558207		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
intron-intron	ENST00000562254	ENST00000559004		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
intron-intron	ENST00000562254	ENST00000352105		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
intron-intron	ENST00000562254	ENST00000561243		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ABHD2	chr15	89698765	+	ACAN	chr15	89398083	+
intron-3CDS	ENST00000318560	ENST00000354484		TCGA	RV	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133589842	+	ADAMTSL2	chr9	136405720	+
intron-3CDS	ENST00000318560	ENST00000393061		TCGA	RV	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133589842	+	ADAMTSL2	chr9	136405720	+
intron-3CDS	ENST00000318560	ENST00000393060		TCGA	RV	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133589842	+	ADAMTSL2	chr9	136405720	+
Frame-shit	ENST00000298992	ENST00000278359		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
Frame-shit	ENST00000298992	ENST00000395787		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
5CDS-intron	ENST00000298992	ENST00000527830		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
Frame-shit	ENST00000435224	ENST00000278359		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
Frame-shit	ENST00000435224	ENST00000395787		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
5CDS-intron	ENST00000435224	ENST00000527830		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
intron-3CDS	ENST00000530814	ENST00000278359		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
intron-3CDS	ENST00000530814	ENST00000395787		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
intron-intron	ENST00000530814	ENST00000527830		TCGA	RV	BRCA	TCGA-AR-A256-01A	ABTB2	chr11	34186233	-	APIP	chr11	34916657	-
5UTR-5UTR	ENST00000475338	ENST00000355360		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5UTR-5UTR	ENST00000475338	ENST00000329291		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5UTR-5UTR	ENST00000475338	ENST00000539153		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5UTR-3UTR	ENST00000475338	ENST00000462488		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000367595	ENST00000355360		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000367595	ENST00000329291		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000367595	ENST00000539153		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
5CDS-3UTR	ENST00000367595	ENST00000462488		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	ACBD6	chr1	180366651	-	PGBD2	chr1	249208015	+
Frame-shit	ENST00000352035	ENST00000457167		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000352035	ENST00000426588		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000352035	ENST00000316603		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000352035	ENST00000589547		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000590151	ENST00000457167		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000590151	ENST00000426588		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000590151	ENST00000316603		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000590151	ENST00000589547		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000353196	ENST00000457167		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000353196	ENST00000426588		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000353196	ENST00000316603		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000353196	ENST00000589547		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000537919	ENST00000457167		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000537919	ENST00000426588		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000537919	ENST00000316603		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000537919	ENST00000589547		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000393896	ENST00000457167		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000393896	ENST00000426588		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000393896	ENST00000316603		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000393896	ENST00000589547		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
intron-3CDS	ENST00000588779	ENST00000457167		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
intron-3CDS	ENST00000588779	ENST00000426588		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
intron-3CDS	ENST00000588779	ENST00000316603		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
intron-intron	ENST00000588779	ENST00000589547		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ACLY	chr17	40054884	-	DNAJC7	chr17	40129341	-
5UTR-3CDS	ENST00000262198	ENST00000400105		TCGA	RV	BRCA	TCGA-A7-A2KD-01A	ADNP2	chr18	77867356	+	L3MBTL4	chr18	6215834	-
5UTR-3CDS	ENST00000262198	ENST00000317931		TCGA	RV	BRCA	TCGA-A7-A2KD-01A	ADNP2	chr18	77867356	+	L3MBTL4	chr18	6215834	-
5UTR-3CDS	ENST00000262198	ENST00000284898		TCGA	RV	BRCA	TCGA-A7-A2KD-01A	ADNP2	chr18	77867356	+	L3MBTL4	chr18	6215834	-
5UTR-3CDS	ENST00000262198	ENST00000400104		TCGA	RV	BRCA	TCGA-A7-A2KD-01A	ADNP2	chr18	77867356	+	L3MBTL4	chr18	6215834	-
5UTR-3CDS	ENST00000262198	ENST00000535782		TCGA	RV	BRCA	TCGA-A7-A2KD-01A	ADNP2	chr18	77867356	+	L3MBTL4	chr18	6215834	-
5UTR-intron	ENST00000262198	ENST00000578677		TCGA	RV	BRCA	TCGA-A7-A2KD-01A	ADNP2	chr18	77867356	+	L3MBTL4	chr18	6215834	-
Frame-shit	ENST00000369066	ENST00000368972		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
Frame-shit	ENST00000369066	ENST00000392644		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
5CDS-intron	ENST00000369066	ENST00000481850		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
Frame-shit	ENST00000535438	ENST00000368972		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
Frame-shit	ENST00000535438	ENST00000392644		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
5CDS-intron	ENST00000535438	ENST00000481850		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
3UTR-3CDS	ENST00000487681	ENST00000368972		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
3UTR-3CDS	ENST00000487681	ENST00000392644		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
3UTR-intron	ENST00000487681	ENST00000481850		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	AIM1	chr6	106992572	+	ARMC2	chr6	109294560	+
In-frame	ENST00000329255	ENST00000396673		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
In-frame	ENST00000329255	ENST00000396672		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
In-frame	ENST00000329255	ENST00000315204		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
Frame-shit	ENST00000329255	ENST00000358872		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
Frame-shit	ENST00000329255	ENST00000534493		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
5CDS-5UTR	ENST00000329255	ENST00000473980		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
5CDS-5UTR	ENST00000329255	ENST00000447869		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	ALX4	chr11	44289044	-	STK33	chr11	8414257	-
intron-5UTR	ENST00000280772	ENST00000308448		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000280772	ENST00000328142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000280772	ENST00000400215		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000280772	ENST00000541004		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000280772	ENST00000495903		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000373827	ENST00000308448		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000373827	ENST00000328142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000373827	ENST00000400215		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000373827	ENST00000541004		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000373827	ENST00000495903		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000355288	ENST00000308448		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000355288	ENST00000328142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000355288	ENST00000400215		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000355288	ENST00000541004		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000355288	ENST00000495903		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000503366	ENST00000308448		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000503366	ENST00000328142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000503366	ENST00000400215		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000503366	ENST00000541004		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000503366	ENST00000495903		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000510382	ENST00000308448		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000510382	ENST00000328142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000510382	ENST00000400215		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000510382	ENST00000541004		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000510382	ENST00000495903		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000460468	ENST00000308448		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000460468	ENST00000328142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000460468	ENST00000400215		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000460468	ENST00000541004		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000460468	ENST00000495903		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	ANK3	chr10	62374944	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000280772	ENST00000360890		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000280772	ENST00000413659		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000280772	ENST00000325239		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-intron	ENST00000280772	ENST00000465910		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000373827	ENST00000360890		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000373827	ENST00000413659		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000373827	ENST00000325239		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-intron	ENST00000373827	ENST00000465910		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000355288	ENST00000360890		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000355288	ENST00000413659		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000355288	ENST00000325239		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-intron	ENST00000355288	ENST00000465910		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000503366	ENST00000360890		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000503366	ENST00000413659		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000503366	ENST00000325239		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-intron	ENST00000503366	ENST00000465910		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000510382	ENST00000360890		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000510382	ENST00000413659		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-5UTR	ENST00000510382	ENST00000325239		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
intron-intron	ENST00000510382	ENST00000465910		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000460468	ENST00000360890		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000460468	ENST00000413659		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000460468	ENST00000325239		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-intron	ENST00000460468	ENST00000465910		TCGA	RV	BRCA	TCGA-E2-A10C-01A	ANK3	chr10	61905726	-	WDFY4	chr10	49917761	+
5CDS-5UTR	ENST00000420843	ENST00000340149		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000420843	ENST00000361507		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000420843	ENST00000526030		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000393505	ENST00000340149		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000393505	ENST00000361507		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000393505	ENST00000526030		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000360025	ENST00000340149		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000360025	ENST00000361507		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000360025	ENST00000526030		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	ARRB1	chr11	75062632	-	GAB2	chr11	77991947	-
Frame-shit	ENST00000420843	ENST00000356136		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
Frame-shit	ENST00000420843	ENST00000528420		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000420843	ENST00000533454		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000420843	ENST00000531818		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000420843	ENST00000532130		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000420843	ENST00000539288		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000420843	ENST00000525872		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000420843	ENST00000538870		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
Frame-shit	ENST00000393505	ENST00000356136		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
Frame-shit	ENST00000393505	ENST00000528420		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000393505	ENST00000533454		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000393505	ENST00000531818		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000393505	ENST00000532130		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000393505	ENST00000539288		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000393505	ENST00000525872		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000393505	ENST00000538870		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
Frame-shit	ENST00000360025	ENST00000356136		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
Frame-shit	ENST00000360025	ENST00000528420		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000360025	ENST00000533454		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000360025	ENST00000531818		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000360025	ENST00000532130		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000360025	ENST00000539288		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000360025	ENST00000525872		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000360025	ENST00000538870		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75715049	+
In-frame	ENST00000357668	ENST00000271751		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ASAP1	chr8	131088594	-	KCNH1	chr1	210977508	-
In-frame	ENST00000357668	ENST00000367007		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ASAP1	chr8	131088594	-	KCNH1	chr1	210977508	-
Frame-shit	ENST00000518721	ENST00000271751		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ASAP1	chr8	131088594	-	KCNH1	chr1	210977508	-
Frame-shit	ENST00000518721	ENST00000367007		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ASAP1	chr8	131088594	-	KCNH1	chr1	210977508	-
intron-3CDS	ENST00000520625	ENST00000271751		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ASAP1	chr8	131088594	-	KCNH1	chr1	210977508	-
intron-3CDS	ENST00000520625	ENST00000367007		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	ASAP1	chr8	131088594	-	KCNH1	chr1	210977508	-
intron-3CDS	ENST00000375687	ENST00000202017		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30959677	+	PDRG1	chr20	30536685	-
3UTR-3CDS	ENST00000542461	ENST00000202017		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30959677	+	PDRG1	chr20	30536685	-
intron-3CDS	ENST00000375689	ENST00000202017		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30959677	+	PDRG1	chr20	30536685	-
intron-3CDS	ENST00000306058	ENST00000202017		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30959677	+	PDRG1	chr20	30536685	-
intron-3CDS	ENST00000470145	ENST00000202017		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30959677	+	PDRG1	chr20	30536685	-
5CDS-5UTR	ENST00000355044	ENST00000308448		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000355044	ENST00000328142		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000355044	ENST00000400215		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000355044	ENST00000541004		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000355044	ENST00000495903		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000423111	ENST00000308448		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000423111	ENST00000328142		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000423111	ENST00000400215		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000423111	ENST00000541004		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000423111	ENST00000495903		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000303745	ENST00000308448		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000303745	ENST00000328142		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000303745	ENST00000400215		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000303745	ENST00000541004		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000303745	ENST00000495903		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000529665	ENST00000308448		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000529665	ENST00000328142		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-intron	ENST00000529665	ENST00000400215		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000529665	ENST00000541004		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000529665	ENST00000495903		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000527407	ENST00000308448		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000527407	ENST00000328142		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-intron	ENST00000527407	ENST00000400215		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000527407	ENST00000541004		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000527407	ENST00000495903		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ATRNL1	chr10	117278834	+	ATAD1	chr10	89574369	-
5UTR-3CDS	ENST00000316199	ENST00000360416		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000316199	ENST00000379980		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000316199	ENST00000396239		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000316199	ENST00000269243		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000534871	ENST00000360416		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000534871	ENST00000379980		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000534871	ENST00000396239		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000534871	ENST00000269243		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000585124	ENST00000360416		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000585124	ENST00000379980		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000585124	ENST00000396239		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5UTR-3CDS	ENST00000585124	ENST00000269243		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000535053	ENST00000360416		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000535053	ENST00000379980		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000535053	ENST00000396239		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000535053	ENST00000269243		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000578549	ENST00000360416		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000578549	ENST00000379980		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000578549	ENST00000396239		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
intron-3CDS	ENST00000578549	ENST00000269243		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	AURKB	chr17	8113848	-	MYH10	chr17	8452105	-
5CDS-5UTR	ENST00000589222	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000589222	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000589222	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000589222	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000589222	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000589222	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000589222	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000407086	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000407086	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000407086	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000407086	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000407086	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000407086	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000407086	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000390652	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000390652	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000390652	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000390652	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000390652	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000390652	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000390652	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000408905	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000408905	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000408905	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000408905	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000408905	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000408905	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000408905	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588462	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588462	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588462	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588462	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588462	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588462	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000588462	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000585744	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000585744	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000585744	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000585744	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000585744	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000585744	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000585744	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588874	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588874	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588874	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588874	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588874	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-5UTR	ENST00000588874	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
5CDS-intron	ENST00000588874	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000585812	ENST00000585509		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000585812	ENST00000589297		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000585812	ENST00000591455		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000585812	ENST00000446868		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000585812	ENST00000361101		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-5UTR	ENST00000585812	ENST00000589296		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
intron-intron	ENST00000585812	ENST00000586175		TCGA	RV	BRCA	TCGA-AR-A0TQ-01A	BCAS3	chr17	59001861	+	CYTH1	chr17	76705814	-
3UTR-3CDS	ENST00000487394	ENST00000426216		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
3UTR-3CDS	ENST00000487394	ENST00000307671		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
3UTR-intron	ENST00000487394	ENST00000586722		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
3UTR-intron	ENST00000487394	ENST00000591464		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
3UTR-intron	ENST00000487394	ENST00000458297		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
3UTR-intron	ENST00000487394	ENST00000543761		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
intron-3CDS	ENST00000164227	ENST00000426216		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
intron-3CDS	ENST00000164227	ENST00000307671		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
intron-intron	ENST00000164227	ENST00000586722		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
intron-intron	ENST00000164227	ENST00000591464		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
intron-intron	ENST00000164227	ENST00000458297		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
intron-intron	ENST00000164227	ENST00000543761		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	BCL3	chr19	45251385	+	ATP9B	chr18	77013381	+
In-frame	ENST00000318407	ENST00000307266		TCGA	RV	BRCA	TCGA-A8-A084-01A	BOK	chr2	242501891	+	MYEOV2	chr2	241066357	-
5CDS-intron	ENST00000318407	ENST00000607357		TCGA	RV	BRCA	TCGA-A8-A084-01A	BOK	chr2	242501891	+	MYEOV2	chr2	241066357	-
5CDS-intron	ENST00000318407	ENST00000489698		TCGA	RV	BRCA	TCGA-A8-A084-01A	BOK	chr2	242501891	+	MYEOV2	chr2	241066357	-
Frame-shit	ENST00000335221	ENST00000374877		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000335221	ENST00000397545		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000335221	ENST00000269318		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000335221	ENST00000374876		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
5CDS-intron	ENST00000335221	ENST00000573903		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000321892	ENST00000374877		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000321892	ENST00000397545		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000321892	ENST00000269318		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000321892	ENST00000374876		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
5CDS-intron	ENST00000321892	ENST00000573903		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000306378	ENST00000374877		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000306378	ENST00000397545		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000306378	ENST00000269318		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000306378	ENST00000374876		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
5CDS-intron	ENST00000306378	ENST00000573903		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000424123	ENST00000374877		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000424123	ENST00000397545		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000424123	ENST00000269318		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
Frame-shit	ENST00000424123	ENST00000374876		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
5CDS-intron	ENST00000424123	ENST00000573903		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
intron-3CDS	ENST00000577770	ENST00000374877		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
intron-3CDS	ENST00000577770	ENST00000397545		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
intron-3CDS	ENST00000577770	ENST00000269318		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
intron-3CDS	ENST00000577770	ENST00000374876		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
intron-intron	ENST00000577770	ENST00000573903		TCGA	RV	BRCA	TCGA-E2-A15H-01A	BPTF	chr17	65928135	+	CCDC40	chr17	78021078	+
In-frame	ENST00000548125	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000548125	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000548125	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000280756	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000280756	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000280756	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000547242	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000547242	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000547242	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000551489	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000551489	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000551489	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000550344	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000550344	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000550344	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000547081	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000547081	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000547081	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000551813	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
In-frame	ENST00000551813	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-intron	ENST00000551813	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
intron-3CDS	ENST00000551237	ENST00000392842		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
intron-3CDS	ENST00000551237	ENST00000357881		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
intron-intron	ENST00000551237	ENST00000229387		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	C12orf23	chr12	107360958	+	RFX4	chr12	107033110	+
5CDS-5UTR	ENST00000300006	ENST00000372990		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000300006	ENST00000289248		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000300006	ENST00000538156		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000300006	ENST00000372985		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000300006	ENST00000540558		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000566490	ENST00000372990		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000566490	ENST00000289248		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000566490	ENST00000538156		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000566490	ENST00000372985		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000566490	ENST00000540558		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000452191	ENST00000372990		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000452191	ENST00000289248		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000452191	ENST00000538156		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000452191	ENST00000372985		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000452191	ENST00000540558		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000561692	ENST00000372990		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000561692	ENST00000289248		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000561692	ENST00000538156		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000561692	ENST00000372985		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000561692	ENST00000540558		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000565913	ENST00000372990		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000565913	ENST00000289248		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000565913	ENST00000538156		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000565913	ENST00000372985		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000565913	ENST00000540558		TCGA	RV	BRCA	TCGA-AO-A126-01A	C16orf45	chr16	15528616	+	RHBDL2	chr1	39385009	-
5CDS-5UTR	ENST00000313070	ENST00000407721		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000313070	ENST00000355527		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000334010	ENST00000407721		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000334010	ENST00000355527		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000412584	ENST00000407721		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000412584	ENST00000355527		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000449022	ENST00000407721		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
5CDS-5UTR	ENST00000449022	ENST00000355527		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
intron-5UTR	ENST00000476131	ENST00000407721		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
intron-5UTR	ENST00000476131	ENST00000355527		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	CADPS2	chr7	122377009	-	DHCR7	chr11	71158780	-
In-frame	ENST00000361183	ENST00000397752		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
In-frame	ENST00000361183	ENST00000318493		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
5CDS-intron	ENST00000361183	ENST00000436117		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
5CDS-intron	ENST00000361183	ENST00000495962		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
5CDS-intron	ENST00000361183	ENST00000539704		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
Frame-shit	ENST00000458284	ENST00000397752		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
Frame-shit	ENST00000458284	ENST00000318493		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
5CDS-intron	ENST00000458284	ENST00000436117		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
5CDS-intron	ENST00000458284	ENST00000495962		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
5CDS-intron	ENST00000458284	ENST00000539704		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-3CDS	ENST00000490693	ENST00000397752		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-3CDS	ENST00000490693	ENST00000318493		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-intron	ENST00000490693	ENST00000436117		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-intron	ENST00000490693	ENST00000495962		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-intron	ENST00000490693	ENST00000539704		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-3CDS	ENST00000466023	ENST00000397752		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-3CDS	ENST00000466023	ENST00000318493		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-intron	ENST00000466023	ENST00000436117		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-intron	ENST00000466023	ENST00000495962		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
intron-intron	ENST00000466023	ENST00000539704		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	CAPZA2	chr7	116550365	+	MET	chr7	116409699	+
In-frame	ENST00000299957	ENST00000220420		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
In-frame	ENST00000299957	ENST00000349114		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
3UTR-3CDS	ENST00000360824	ENST00000220420		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
3UTR-3CDS	ENST00000360824	ENST00000349114		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
In-frame	ENST00000345795	ENST00000220420		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
In-frame	ENST00000345795	ENST00000349114		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
intron-3CDS	ENST00000429162	ENST00000220420		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
intron-3CDS	ENST00000429162	ENST00000349114		TCGA	RV	BRCA	TCGA-BH-A0E6-01A	CASC4	chr15	44630515	+	TGM5	chr15	43533188	-
Frame-shit	ENST00000360469	ENST00000262866		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CDH4	chr20	60448956	+	SLA2	chr20	35262992	-
Frame-shit	ENST00000360469	ENST00000360672		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CDH4	chr20	60448956	+	SLA2	chr20	35262992	-
Frame-shit	ENST00000543233	ENST00000262866		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CDH4	chr20	60448956	+	SLA2	chr20	35262992	-
Frame-shit	ENST00000543233	ENST00000360672		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CDH4	chr20	60448956	+	SLA2	chr20	35262992	-
5CDS-intron	ENST00000423902	ENST00000519416		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000520615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000423902	ENST00000443286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000423902	ENST00000520340		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000423902	ENST00000518415		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000522752		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000348567		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000330691		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000317827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000379931		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000276520		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000520973		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000423902	ENST00000520611		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000519416		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000520615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-5UTR	ENST00000524602	ENST00000443286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-5UTR	ENST00000524602	ENST00000520340		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-5UTR	ENST00000524602	ENST00000518415		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000522752		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000348567		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000330691		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000317827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000379931		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000276520		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000520973		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000524602	ENST00000520611		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000519416		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000520615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000525508	ENST00000443286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000525508	ENST00000520340		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000525508	ENST00000518415		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000522752		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000348567		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000330691		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000317827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000379931		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000276520		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000520973		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000525508	ENST00000520611		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000519416		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000520615		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-5UTR	ENST00000529472	ENST00000443286		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-5UTR	ENST00000529472	ENST00000520340		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-5UTR	ENST00000529472	ENST00000518415		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000522752		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000348567		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000330691		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000317827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000379931		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000276520		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000520973		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
intron-intron	ENST00000529472	ENST00000520611		TCGA	RV	BRCA	TCGA-C8-A27A-01A	CHD7	chr8	61693989	+	TACC1	chr8	38599869	+
5CDS-intron	ENST00000393094	ENST00000449833		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000409161		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000423696		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000338508		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000409530		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000449116		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000357171		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
5CDS-intron	ENST00000393094	ENST00000468619		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000449833		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000409161		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000423696		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000338508		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000409530		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000449116		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000357171		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
intron-intron	ENST00000531843	ENST00000468619		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CUL5	chr11	107925682	+	SHANK2	chr11	70830078	-
Frame-shit	ENST00000225428	ENST00000394126		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000225428	ENST00000356271		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000225428	ENST00000394128		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000225428	ENST00000394127		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5CDS-intron	ENST00000225428	ENST00000501516		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000225428	ENST00000479829		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5UTR-3CDS	ENST00000536127	ENST00000394126		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000536127	ENST00000356271		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000536127	ENST00000394128		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000536127	ENST00000394127		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5UTR-intron	ENST00000536127	ENST00000501516		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000536127	ENST00000479829		TCGA	RV	BRCA	TCGA-E9-A228-01A	CWC25	chr17	36977154	-	MED24	chr17	38209888	-
Frame-shit	ENST00000393547	ENST00000375735		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5CDS-intron	ENST00000393547	ENST00000334267		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5CDS-intron	ENST00000393547	ENST00000398093		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
Frame-shit	ENST00000398338	ENST00000375735		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5CDS-intron	ENST00000398338	ENST00000334267		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5CDS-intron	ENST00000398338	ENST00000398093		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
Frame-shit	ENST00000315005	ENST00000375735		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5CDS-intron	ENST00000315005	ENST00000334267		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5CDS-intron	ENST00000315005	ENST00000398093		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
intron-3CDS	ENST00000526915	ENST00000375735		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
intron-intron	ENST00000526915	ENST00000334267		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
intron-intron	ENST00000526915	ENST00000398093		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	DBF4B	chr17	42786734	+	DYNC2H1	chr11	103036627	+
5UTR-3CDS	ENST00000420323	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
5UTR-3CDS	ENST00000420323	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
5UTR-3CDS	ENST00000420323	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
5UTR-3CDS	ENST00000420323	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
intron-3CDS	ENST00000466628	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
intron-3CDS	ENST00000466628	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
intron-3CDS	ENST00000466628	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
intron-3CDS	ENST00000466628	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	DNAH1	chr3	52350561	+	ALAS1	chr3	52245299	+
Frame-shit	ENST00000309117	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5CDS-3UTR	ENST00000309117	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5UTR-3CDS	ENST00000399000	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5UTR-3UTR	ENST00000399000	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5UTR-3CDS	ENST00000288304	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5UTR-3UTR	ENST00000288304	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
Frame-shit	ENST00000539844	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5CDS-3UTR	ENST00000539844	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
Frame-shit	ENST00000399001	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5CDS-3UTR	ENST00000399001	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
Frame-shit	ENST00000476950	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5CDS-3UTR	ENST00000476950	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
Frame-shit	ENST00000398998	ENST00000380588		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
5CDS-3UTR	ENST00000398998	ENST00000479378		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	DSCR3	chr21	38639539	-	IGSF5	chr21	41137462	+
In-frame	ENST00000266517	ENST00000330430		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000266517	ENST00000371374		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000266517	ENST00000306764		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000266517	ENST00000405162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000335148	ENST00000330430		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000335148	ENST00000371374		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000335148	ENST00000306764		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
In-frame	ENST00000335148	ENST00000405162		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	ETNK1	chr12	22778520	+	RCAN2	chr6	46216633	-
Frame-shit	ENST00000396153	ENST00000393038		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000396153	ENST00000537860		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
In-frame	ENST00000396153	ENST00000409433		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
In-frame	ENST00000396153	ENST00000470557		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000396153	ENST00000579915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
In-frame	ENST00000371778	ENST00000393038		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000371778	ENST00000537860		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000371778	ENST00000409433		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000371778	ENST00000470557		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000371778	ENST00000579915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000545823	ENST00000393038		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000545823	ENST00000537860		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000545823	ENST00000409433		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000545823	ENST00000470557		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-intron	ENST00000545823	ENST00000579915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000472808	ENST00000393038		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000472808	ENST00000537860		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000472808	ENST00000409433		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000472808	ENST00000470557		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
intron-intron	ENST00000472808	ENST00000579915		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	FAF1	chr1	51121114	-	PTRH2	chr17	57775339	-
In-frame	ENST00000583610	ENST00000300417		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000583610	ENST00000373324		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000583610	ENST00000323301		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000583610	ENST00000373322		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
5CDS-3UTR	ENST00000583610	ENST00000483302		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000394294	ENST00000300417		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000394294	ENST00000373324		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000394294	ENST00000323301		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000394294	ENST00000373322		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
5CDS-3UTR	ENST00000394294	ENST00000483302		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000264658	ENST00000300417		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000264658	ENST00000373324		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000264658	ENST00000323301		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
In-frame	ENST00000264658	ENST00000373322		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
5CDS-3UTR	ENST00000264658	ENST00000483302		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
intron-3CDS	ENST00000577399	ENST00000300417		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
intron-3CDS	ENST00000577399	ENST00000373324		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
intron-3CDS	ENST00000577399	ENST00000323301		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
intron-3CDS	ENST00000577399	ENST00000373322		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
intron-3UTR	ENST00000577399	ENST00000483302		TCGA	RV	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37557614	-	LRSAM1	chr9	130257599	+
Frame-shit	ENST00000441788	ENST00000589123		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000441788	ENST00000346156		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000441788	ENST00000395111		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000441788	ENST00000586919		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000441788	ENST00000341919		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000441788	ENST00000590282		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000441788	ENST00000443272		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000441788	ENST00000588839		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
Frame-shit	ENST00000313639	ENST00000589123		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000313639	ENST00000346156		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000313639	ENST00000395111		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000313639	ENST00000586919		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000313639	ENST00000341919		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000313639	ENST00000590282		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000313639	ENST00000443272		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000313639	ENST00000588839		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
Frame-shit	ENST00000395095	ENST00000589123		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000395095	ENST00000346156		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000395095	ENST00000395111		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000395095	ENST00000586919		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000395095	ENST00000341919		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000395095	ENST00000590282		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-3UTR	ENST00000395095	ENST00000443272		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
5CDS-intron	ENST00000395095	ENST00000588839		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	FZR1	chr19	3526384	+	NFIC	chr19	3462750	+
intron-3CDS	ENST00000395719	ENST00000371621		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-intron	ENST00000395719	ENST00000541713		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-3CDS	ENST00000359707	ENST00000371621		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-intron	ENST00000359707	ENST00000541713		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-3CDS	ENST00000357854	ENST00000371621		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-intron	ENST00000357854	ENST00000541713		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-3CDS	ENST00000502654	ENST00000371621		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
intron-intron	ENST00000502654	ENST00000541713		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	G3BP2	chr4	76649460	-	PTPN1	chr20	49177900	+
5CDS-5UTR	ENST00000346178	ENST00000373953		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000346178	ENST00000440666		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000346178	ENST00000339411		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000346178	ENST00000482946		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000356638	ENST00000373953		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000356638	ENST00000440666		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000356638	ENST00000339411		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000356638	ENST00000482946		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000534779	ENST00000373953		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000534779	ENST00000440666		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000534779	ENST00000339411		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000534779	ENST00000482946		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000540933	ENST00000373953		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000540933	ENST00000440666		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000540933	ENST00000339411		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000540933	ENST00000482946		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-5UTR	ENST00000534422	ENST00000373953		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-5UTR	ENST00000534422	ENST00000440666		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-5UTR	ENST00000534422	ENST00000339411		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-3UTR	ENST00000534422	ENST00000482946		TCGA	RV	BRCA	TCGA-A7-A13D-01B	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5UTR-3CDS	ENST00000398810	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-intron	ENST00000398810	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
Frame-shit	ENST00000439599	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5CDS-intron	ENST00000439599	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
Frame-shit	ENST00000398812	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5CDS-intron	ENST00000398812	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-3CDS	ENST00000335866	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-intron	ENST00000335866	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
intron-3CDS	ENST00000402578	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
intron-intron	ENST00000402578	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
Frame-shit	ENST00000403097	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5CDS-intron	ENST00000403097	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-3CDS	ENST00000406641	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-intron	ENST00000406641	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
Frame-shit	ENST00000357271	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5CDS-intron	ENST00000357271	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-3CDS	ENST00000407526	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-intron	ENST00000407526	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
Frame-shit	ENST00000401949	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5CDS-intron	ENST00000401949	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-3CDS	ENST00000402497	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5UTR-intron	ENST00000402497	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
intron-3CDS	ENST00000483819	ENST00000280871		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
intron-intron	ENST00000483819	ENST00000380858		TCGA	RV	BRCA	TCGA-E9-A22G-01A	GRB10	chr7	50771518	-	SLC2A13	chr12	40154054	-
5CDS-intron	ENST00000053867	ENST00000311028		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000053867	ENST00000395923		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000053867	ENST00000220931		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000053867	ENST00000521599		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000053867	ENST00000522951		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000053867	ENST00000519508		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000053867	ENST00000521371		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000311028		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000395923		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000220931		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000521599		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000522951		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000519508		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589265	ENST00000521371		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000311028		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000395923		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000220931		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000521599		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000522951		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000519508		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
intron-intron	ENST00000589923	ENST00000521371		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	GRN	chr17	42430470	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000080059	ENST00000440781		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000080059	ENST00000431837		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000080059	ENST00000448290		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000080059	ENST00000551736		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-intron	ENST00000354334	ENST00000440781		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000354334	ENST00000431837		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000354334	ENST00000448290		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000354334	ENST00000551736		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-intron	ENST00000552960	ENST00000440781		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000552960	ENST00000431837		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000552960	ENST00000448290		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000552960	ENST00000551736		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-intron	ENST00000380610	ENST00000440781		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000380610	ENST00000431837		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000380610	ENST00000448290		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000380610	ENST00000551736		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-intron	ENST00000427332	ENST00000440781		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000427332	ENST00000431837		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000427332	ENST00000448290		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000427332	ENST00000551736		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5UTR-intron	ENST00000488927	ENST00000440781		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5UTR-5UTR	ENST00000488927	ENST00000431837		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5UTR-5UTR	ENST00000488927	ENST00000448290		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
5UTR-5UTR	ENST00000488927	ENST00000551736		TCGA	RV	BRCA	TCGA-E2-A14T-01A	HDAC7	chr12	48185042	-	IRAK4	chr12	44161906	+
Frame-shit	ENST00000184956	ENST00000269127		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58153491	-	C17orf64	chr17	58508542	+
Frame-shit	ENST00000585976	ENST00000269127		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58153491	-	C17orf64	chr17	58508542	+
intron-3CDS	ENST00000585712	ENST00000269127		TCGA	RV	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58153491	-	C17orf64	chr17	58508542	+
5CDS-intron	ENST00000446394	ENST00000371687		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000446394	ENST00000543648		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000446394	ENST00000490164		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000446394	ENST00000336126		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000371681	ENST00000371687		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000371681	ENST00000543648		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000371681	ENST00000490164		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000371681	ENST00000336126		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000298068	ENST00000371687		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000298068	ENST00000543648		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000298068	ENST00000490164		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-intron	ENST00000298068	ENST00000336126		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000536715	ENST00000371687		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000536715	ENST00000543648		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000536715	ENST00000490164		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000536715	ENST00000336126		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000498446	ENST00000371687		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000498446	ENST00000543648		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000498446	ENST00000490164		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000498446	ENST00000336126		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000371667	ENST00000371687		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000371667	ENST00000543648		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000371667	ENST00000490164		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
intron-intron	ENST00000371667	ENST00000336126		TCGA	RV	BRCA	TCGA-C8-A1HG-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93021083	+
5CDS-5UTR	ENST00000343813	ENST00000377893		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	ICMT	chr1	6293534	-	GPR153	chr1	6315074	-
intron-5UTR	ENST00000495791	ENST00000377893		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	ICMT	chr1	6293534	-	GPR153	chr1	6315074	-
intron-5UTR	ENST00000362035	ENST00000377893		TCGA	RV	BRCA	TCGA-BH-A0DX-01A	ICMT	chr1	6293534	-	GPR153	chr1	6315074	-
In-frame	ENST00000268035	ENST00000350026		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000268035	ENST00000346085		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000268035	ENST00000367148		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000268035	ENST00000275248		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
5CDS-intron	ENST00000268035	ENST00000478761		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000558762	ENST00000350026		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000558762	ENST00000346085		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000558762	ENST00000367148		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
In-frame	ENST00000558762	ENST00000275248		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
5CDS-intron	ENST00000558762	ENST00000478761		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
intron-3CDS	ENST00000560432	ENST00000350026		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
intron-3CDS	ENST00000560432	ENST00000346085		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
intron-3CDS	ENST00000560432	ENST00000367148		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
intron-3CDS	ENST00000560432	ENST00000275248		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
intron-intron	ENST00000560432	ENST00000478761		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99251336	+	ARID1B	chr6	157469758	+
Frame-shit	ENST00000377967	ENST00000448838		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000377967	ENST00000227868		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000377967	ENST00000430469		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
5CDS-intron	ENST00000377967	ENST00000477173		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000382899	ENST00000448838		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000382899	ENST00000227868		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000382899	ENST00000430469		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
5CDS-intron	ENST00000382899	ENST00000477173		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000536777	ENST00000448838		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000536777	ENST00000227868		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000536777	ENST00000430469		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
5CDS-intron	ENST00000536777	ENST00000477173		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000543216	ENST00000448838		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000543216	ENST00000227868		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
Frame-shit	ENST00000543216	ENST00000430469		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
5CDS-intron	ENST00000543216	ENST00000477173		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
intron-3CDS	ENST00000479423	ENST00000448838		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
intron-3CDS	ENST00000479423	ENST00000227868		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
intron-3CDS	ENST00000479423	ENST00000430469		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
intron-intron	ENST00000479423	ENST00000477173		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	KDM6A	chrX	44950109	+	PDHX	chr11	34952951	+
5CDS-intron	ENST00000254846	ENST00000389982		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
5CDS-intron	ENST00000254846	ENST00000576060		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
5CDS-intron	ENST00000254846	ENST00000330767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
5CDS-intron	ENST00000448097	ENST00000389982		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
5CDS-intron	ENST00000448097	ENST00000576060		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
5CDS-intron	ENST00000448097	ENST00000330767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
intron-intron	ENST00000572030	ENST00000389982		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
intron-intron	ENST00000572030	ENST00000576060		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
intron-intron	ENST00000572030	ENST00000330767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755383	+	TMEM95	chr17	7259711	+
Frame-shit	ENST00000338205	ENST00000320580		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
Frame-shit	ENST00000338205	ENST00000529757		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
5CDS-intron	ENST00000338205	ENST00000524815		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
Frame-shit	ENST00000259335	ENST00000320580		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
Frame-shit	ENST00000259335	ENST00000529757		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
5CDS-intron	ENST00000259335	ENST00000524815		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
intron-3CDS	ENST00000374378	ENST00000320580		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
intron-3CDS	ENST00000374378	ENST00000529757		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
intron-intron	ENST00000374378	ENST00000524815		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
intron-3CDS	ENST00000465499	ENST00000320580		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
intron-3CDS	ENST00000465499	ENST00000529757		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
intron-intron	ENST00000465499	ENST00000524815		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	KIAA0368	chr9	114182297	-	PACS1	chr11	66000431	+
5CDS-5UTR	ENST00000558518	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000558518	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558518	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558518	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558518	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000558518	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558518	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000557933	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000557933	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000557933	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000557933	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000557933	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000557933	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000557933	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000455727	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000455727	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000455727	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000455727	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000455727	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000455727	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000455727	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000535915	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000535915	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000535915	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000535915	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000535915	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000535915	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000535915	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000545707	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000545707	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000545707	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000545707	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000545707	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000545707	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000545707	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000558013	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000558013	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558013	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558013	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558013	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-5UTR	ENST00000558013	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
5CDS-intron	ENST00000558013	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-5UTR	ENST00000560628	ENST00000425528		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-5UTR	ENST00000560628	ENST00000441499		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-intron	ENST00000560628	ENST00000356861		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-intron	ENST00000560628	ENST00000450764		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-intron	ENST00000560628	ENST00000592287		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-5UTR	ENST00000560628	ENST00000588216		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
intron-intron	ENST00000560628	ENST00000589956		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834179	-
In-frame	ENST00000356554	ENST00000355485		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
In-frame	ENST00000356554	ENST00000369510		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
In-frame	ENST00000356554	ENST00000310260		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
In-frame	ENST00000356554	ENST00000369509		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
5CDS-3UTR	ENST00000356554	ENST00000474344		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000482811	ENST00000355485		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000482811	ENST00000369510		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000482811	ENST00000310260		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000482811	ENST00000369509		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
intron-3UTR	ENST00000482811	ENST00000474344		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	MAN1A2	chr1	117984947	+	VANGL1	chr1	116224985	+
Frame-shit	ENST00000540418	ENST00000399410		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
Frame-shit	ENST00000540418	ENST00000349029		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
Frame-shit	ENST00000540418	ENST00000351154		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
Frame-shit	ENST00000540418	ENST00000399408		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
Frame-shit	ENST00000540418	ENST00000345148		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
Frame-shit	ENST00000540418	ENST00000346370		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
5CDS-intron	ENST00000540418	ENST00000576557		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000303145	ENST00000399410		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000303145	ENST00000349029		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000303145	ENST00000351154		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000303145	ENST00000399408		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000303145	ENST00000345148		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000303145	ENST00000346370		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
5CDS-intron	ENST00000303145	ENST00000576557		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000411698	ENST00000399410		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000411698	ENST00000349029		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000411698	ENST00000351154		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000411698	ENST00000399408		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000411698	ENST00000345148		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000411698	ENST00000346370		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
5CDS-intron	ENST00000411698	ENST00000576557		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000393543	ENST00000399410		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000393543	ENST00000349029		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000393543	ENST00000351154		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000393543	ENST00000399408		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000393543	ENST00000345148		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000393543	ENST00000346370		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-intron	ENST00000393543	ENST00000576557		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000430606	ENST00000399410		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000430606	ENST00000349029		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000430606	ENST00000351154		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000430606	ENST00000399408		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000430606	ENST00000345148		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000430606	ENST00000346370		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-intron	ENST00000430606	ENST00000576557		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000545724	ENST00000399410		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000545724	ENST00000349029		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000545724	ENST00000351154		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000545724	ENST00000399408		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000545724	ENST00000345148		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-3CDS	ENST00000545724	ENST00000346370		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
intron-intron	ENST00000545724	ENST00000576557		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MDM1	chr12	68707223	-	ABCC1	chr16	16108348	+
In-frame	ENST00000394287	ENST00000269051		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MED1	chr17	37604051	-	RHBDL3	chr17	30615811	+
In-frame	ENST00000394287	ENST00000538145		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MED1	chr17	37604051	-	RHBDL3	chr17	30615811	+
In-frame	ENST00000394287	ENST00000536287		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MED1	chr17	37604051	-	RHBDL3	chr17	30615811	+
In-frame	ENST00000300651	ENST00000269051		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MED1	chr17	37604051	-	RHBDL3	chr17	30615811	+
In-frame	ENST00000300651	ENST00000538145		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MED1	chr17	37604051	-	RHBDL3	chr17	30615811	+
In-frame	ENST00000300651	ENST00000536287		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	MED1	chr17	37604051	-	RHBDL3	chr17	30615811	+
In-frame	ENST00000415822	ENST00000486715		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
Frame-shit	ENST00000415822	ENST00000478576		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
In-frame	ENST00000415822	ENST00000264263		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
5CDS-intron	ENST00000415822	ENST00000490261		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
In-frame	ENST00000392813	ENST00000486715		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
Frame-shit	ENST00000392813	ENST00000478576		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
In-frame	ENST00000392813	ENST00000264263		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
5CDS-intron	ENST00000392813	ENST00000490261		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
In-frame	ENST00000264266	ENST00000486715		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
Frame-shit	ENST00000264266	ENST00000478576		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
In-frame	ENST00000264266	ENST00000264263		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
5CDS-intron	ENST00000264266	ENST00000490261		TCGA	RV	BRCA	TCGA-A8-A07U-01A	MFSD1	chr3	158545126	+	GFM1	chr3	158399784	+
intron-intron	ENST00000591142	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000591142	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000591601	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000591601	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000309340	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000309340	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000250896	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000250896	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000541165	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000541165	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000591588	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000591588	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000588014	ENST00000371304		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
intron-intron	ENST00000588014	ENST00000302250		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	MKNK2	chr19	2046185	-	FAM151A	chr1	55076228	-
5CDS-intron	ENST00000416426	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000416426	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000416426	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-intron	ENST00000284073	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000284073	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000284073	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-intron	ENST00000322684	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000322684	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000322684	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-intron	ENST00000442934	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000442934	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000442934	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-intron	ENST00000579180	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000579180	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
5CDS-5UTR	ENST00000579180	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
3UTR-intron	ENST00000579505	ENST00000581865		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
3UTR-5UTR	ENST00000579505	ENST00000312655		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
3UTR-5UTR	ENST00000579505	ENST00000585166		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	YPEL2	chr17	57430576	+
Frame-shit	ENST00000449682	ENST00000215917		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	MST1	chr3	49721747	-	SRRD	chr22	26883995	+
intron-3CDS	ENST00000383728	ENST00000215917		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	MST1	chr3	49721747	-	SRRD	chr22	26883995	+
intron-3CDS	ENST00000545762	ENST00000215917		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	MST1	chr3	49721747	-	SRRD	chr22	26883995	+
intron-3CDS	ENST00000494828	ENST00000215917		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	MST1	chr3	49721747	-	SRRD	chr22	26883995	+
Frame-shit	ENST00000296543	ENST00000432059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
Frame-shit	ENST00000296543	ENST00000335472		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-3UTR	ENST00000296543	ENST00000264986		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-3UTR	ENST00000296543	ENST00000507030		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-3UTR	ENST00000296543	ENST00000394062		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000296543	ENST00000394059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000296543	ENST00000511315		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000296543	ENST00000511374		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000296543	ENST00000502607		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
Frame-shit	ENST00000398947	ENST00000432059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
Frame-shit	ENST00000398947	ENST00000335472		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-3UTR	ENST00000398947	ENST00000264986		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-3UTR	ENST00000398947	ENST00000507030		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-3UTR	ENST00000398947	ENST00000394062		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000398947	ENST00000394059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000398947	ENST00000511315		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000398947	ENST00000511374		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
5CDS-intron	ENST00000398947	ENST00000502607		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3CDS	ENST00000480277	ENST00000432059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3CDS	ENST00000480277	ENST00000335472		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3UTR	ENST00000480277	ENST00000264986		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3UTR	ENST00000480277	ENST00000507030		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3UTR	ENST00000480277	ENST00000394062		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000480277	ENST00000394059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000480277	ENST00000511315		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000480277	ENST00000511374		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000480277	ENST00000502607		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3CDS	ENST00000515576	ENST00000432059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3CDS	ENST00000515576	ENST00000335472		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3UTR	ENST00000515576	ENST00000264986		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3UTR	ENST00000515576	ENST00000507030		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-3UTR	ENST00000515576	ENST00000394062		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000515576	ENST00000394059		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000515576	ENST00000511315		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000515576	ENST00000511374		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
intron-intron	ENST00000515576	ENST00000502607		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	NAA15	chr4	140291558	+	SLC10A7	chr4	147179989	-
In-frame	ENST00000294785	ENST00000368081		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-3UTR	ENST00000294785	ENST00000418334		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-intron	ENST00000294785	ENST00000470705		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
In-frame	ENST00000368063	ENST00000368081		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-3UTR	ENST00000368063	ENST00000418334		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-intron	ENST00000368063	ENST00000470705		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
In-frame	ENST00000535857	ENST00000368081		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-3UTR	ENST00000535857	ENST00000418334		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-intron	ENST00000535857	ENST00000470705		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
In-frame	ENST00000392212	ENST00000368081		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-3UTR	ENST00000392212	ENST00000418334		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-intron	ENST00000392212	ENST00000470705		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
intron-3CDS	ENST00000459963	ENST00000368081		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
intron-3UTR	ENST00000459963	ENST00000418334		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
intron-intron	ENST00000459963	ENST00000470705		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
intron-3CDS	ENST00000368065	ENST00000368081		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
intron-3UTR	ENST00000368065	ENST00000418334		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
intron-intron	ENST00000368065	ENST00000470705		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	NCSTN	chr1	160314616	+	ATP1A4	chr1	160145882	+
5CDS-5UTR	ENST00000296597	ENST00000504022		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000296597	ENST00000274361		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000296597	ENST00000506364		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000511107	ENST00000504022		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000511107	ENST00000274361		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
5CDS-5UTR	ENST00000511107	ENST00000506364		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
intron-5UTR	ENST00000512623	ENST00000504022		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
intron-5UTR	ENST00000512623	ENST00000274361		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
intron-5UTR	ENST00000512623	ENST00000506364		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74380199	-
In-frame	ENST00000377122	ENST00000376980		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
5CDS-intron	ENST00000377122	ENST00000376946		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
5CDS-5UTR	ENST00000377122	ENST00000483085		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-3CDS	ENST00000417816	ENST00000376980		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-intron	ENST00000417816	ENST00000376946		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-5UTR	ENST00000417816	ENST00000483085		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-3CDS	ENST00000377159	ENST00000376980		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-intron	ENST00000377159	ENST00000376946		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-5UTR	ENST00000377159	ENST00000483085		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
In-frame	ENST00000377119	ENST00000376980		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
5CDS-intron	ENST00000377119	ENST00000376946		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
5CDS-5UTR	ENST00000377119	ENST00000483085		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-3CDS	ENST00000464278	ENST00000376980		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-intron	ENST00000464278	ENST00000376946		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
intron-5UTR	ENST00000464278	ENST00000483085		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	NEBL	chr10	21177026	-	DNAJC1	chr10	22055238	-
5CDS-5UTR	ENST00000356462	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000356462	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000356462	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000400345	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000400345	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000400345	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
intron-5UTR	ENST00000589054	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
intron-5UTR	ENST00000589054	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
intron-5UTR	ENST00000589054	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000256832	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000256832	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000256832	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000382850	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000382850	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000382850	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000256830	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000256830	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000256830	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
intron-5UTR	ENST00000588516	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
intron-5UTR	ENST00000588516	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
intron-5UTR	ENST00000588516	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000456986	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000456986	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000456986	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000435432	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000435432	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000435432	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000357895	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000357895	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000357895	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000586263	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000586263	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5CDS-5UTR	ENST00000586263	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000456173	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000456173	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000456173	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000431212	ENST00000306346		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000431212	ENST00000589332		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000431212	ENST00000586687		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	NEDD4L	chr18	55919286	+	ZNF396	chr18	32954328	-
5UTR-5UTR	ENST00000367385	ENST00000535699		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367385	ENST00000538660		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367385	ENST00000367400		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367385	ENST00000367399		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367385	ENST00000543483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367385	ENST00000544212		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367385	ENST00000367397		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367385	ENST00000476483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000538004	ENST00000535699		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000538004	ENST00000538660		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000538004	ENST00000367400		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000538004	ENST00000367399		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000538004	ENST00000543483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000538004	ENST00000544212		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000538004	ENST00000367397		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000538004	ENST00000476483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367383	ENST00000535699		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367383	ENST00000538660		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367383	ENST00000367400		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000367383	ENST00000367399		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367383	ENST00000543483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367383	ENST00000544212		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367383	ENST00000367397		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5UTR-intron	ENST00000367383	ENST00000476483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000417895	ENST00000535699		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000417895	ENST00000538660		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000417895	ENST00000367400		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000417895	ENST00000367399		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000417895	ENST00000543483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000417895	ENST00000544212		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000417895	ENST00000367397		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
intron-intron	ENST00000417895	ENST00000476483		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	NEK7	chr1	198126406	+	CRB1	chr1	197297552	+
5CDS-3UTR	ENST00000371191	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371191	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371191	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371191	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371191	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000407417	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000407417	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000407417	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000407417	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000407417	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
3UTR-3UTR	ENST00000479364	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
3UTR-3UTR	ENST00000479364	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
3UTR-3UTR	ENST00000479364	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
3UTR-3UTR	ENST00000479364	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
3UTR-3UTR	ENST00000479364	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371189	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371189	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371189	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371189	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371189	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000403491	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000403491	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000403491	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000403491	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000403491	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371187	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371187	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371187	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371187	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371187	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000485903	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000485903	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000485903	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000485903	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000485903	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371185	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371185	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371185	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371185	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371185	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371184	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371184	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371184	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371184	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
5CDS-3UTR	ENST00000371184	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000357977	ENST00000474476		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000357977	ENST00000371218		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000357977	ENST00000303721		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000357977	ENST00000371212		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
intron-3UTR	ENST00000357977	ENST00000371210		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	NFIA	chr1	61849037	+	FGGY	chr1	60125891	+
In-frame	ENST00000253247	ENST00000396946		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NOL11	chr17	65733261	+	CARD11	chr7	2979562	-
intron-3CDS	ENST00000581966	ENST00000396946		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NOL11	chr17	65733261	+	CARD11	chr7	2979562	-
In-frame	ENST00000535137	ENST00000396946		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	NOL11	chr17	65733261	+	CARD11	chr7	2979562	-
5CDS-5UTR	ENST00000262077	ENST00000504387		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000262077	ENST00000379446		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000262077	ENST00000379433		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000262077	ENST00000508800		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-5UTR	ENST00000537253	ENST00000504387		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000537253	ENST00000379446		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000537253	ENST00000379433		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000537253	ENST00000508800		TCGA	RV	BRCA	TCGA-LL-A740-01A	NUP153	chr6	17688627	-	NEDD9	chr6	11306388	-
Frame-shit	ENST00000356770	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000356770	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000356770	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000356770	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000356770	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000394830	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000394830	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000394830	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000394830	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000394830	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000296302	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000296302	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000296302	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000296302	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000296302	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000337303	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000337303	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000337303	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000337303	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000337303	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000410007	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000410007	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000410007	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000410007	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000410007	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409057	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409057	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409057	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409057	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000409057	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409114	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409114	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409114	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409114	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000409114	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409767	ENST00000415676		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409767	ENST00000288197		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409767	ENST00000474759		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
Frame-shit	ENST00000409767	ENST00000490478		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000409767	ENST00000478261		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	PBRM1	chr3	52637537	-	CACNA2D3	chr3	54420742	+
5UTR-3UTR	ENST00000393958	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000393960	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000355677	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000524491	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000529047	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000393955	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000528224	ENST00000281030		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	PC	chr11	66719901	-	THRSP	chr11	77778705	+
5CDS-5UTR	ENST00000372592	ENST00000291900		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-intron	ENST00000372592	ENST00000494461		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-5UTR	ENST00000308941	ENST00000291900		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-intron	ENST00000308941	ENST00000494461		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-5UTR	ENST00000353176	ENST00000291900		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-intron	ENST00000353176	ENST00000494461		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-5UTR	ENST00000421063	ENST00000291900		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-intron	ENST00000421063	ENST00000494461		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
intron-5UTR	ENST00000487504	ENST00000291900		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
intron-intron	ENST00000487504	ENST00000494461		TCGA	RV	BRCA	TCGA-E2-A158-01A	PHYHD1	chr9	131684635	+	ZER1	chr9	131517938	-
5CDS-intron	ENST00000269554	ENST00000401766		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36943076	-	SLC6A4	chr17	28549933	-
5CDS-5UTR	ENST00000269554	ENST00000261707		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36943076	-	SLC6A4	chr17	28549933	-
5UTR-intron	ENST00000311500	ENST00000401766		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36943076	-	SLC6A4	chr17	28549933	-
5UTR-5UTR	ENST00000311500	ENST00000261707		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36943076	-	SLC6A4	chr17	28549933	-
Frame-shit	ENST00000580974	ENST00000346872		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000394189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000439167		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000535189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000377944		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000377945		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000377952		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000377958		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000346243		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000350532		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000351680		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000467757		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000580974	ENST00000439016		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000580974	ENST00000583368		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000346872		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000394189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000439167		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000535189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000377944		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000377945		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000377952		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000377958		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000346243		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000350532		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000351680		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000467757		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000299954	ENST00000439016		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000299954	ENST00000583368		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000346872		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000394189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000439167		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000535189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000377944		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000377945		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000377952		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000377958		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000346243		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000350532		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000351680		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000467757		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000335257	ENST00000439016		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000335257	ENST00000583368		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000346872		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000394189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000439167		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000535189		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000377944		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000377945		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000377952		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000377958		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000346243		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000350532		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000351680		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000467757		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000581322	ENST00000439016		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000581322	ENST00000583368		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PITPNC1	chr17	65374318	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000279230	ENST00000394532		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
Frame-shit	ENST00000279230	ENST00000309032		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000279230	ENST00000544785		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000279230	ENST00000394531		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
Frame-shit	ENST00000540288	ENST00000394532		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
Frame-shit	ENST00000540288	ENST00000309032		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000540288	ENST00000544785		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000540288	ENST00000394531		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
Frame-shit	ENST00000325234	ENST00000394532		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
Frame-shit	ENST00000325234	ENST00000309032		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000325234	ENST00000544785		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000325234	ENST00000394531		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PLCB3	chr11	64027706	+	BAD	chr11	64039275	-
Frame-shit	ENST00000244007	ENST00000252996		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
5CDS-intron	ENST00000244007	ENST00000609045		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
Frame-shit	ENST00000373272	ENST00000252996		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
5CDS-intron	ENST00000373272	ENST00000609045		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
Frame-shit	ENST00000373271	ENST00000252996		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
5CDS-intron	ENST00000373271	ENST00000609045		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
intron-3CDS	ENST00000608689	ENST00000252996		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
intron-intron	ENST00000608689	ENST00000609045		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	PLCG1	chr20	39766498	+	TAF4	chr20	60584230	-
intron-3CDS	ENST00000521746	ENST00000399881		TCGA	RV	BRCA	TCGA-C8-A12X-01A	PLEKHA2	chr8	38759410	+	KCNU1	chr8	36793033	+
intron-intron	ENST00000521746	ENST00000518904		TCGA	RV	BRCA	TCGA-C8-A12X-01A	PLEKHA2	chr8	38759410	+	KCNU1	chr8	36793033	+
intron-3CDS	ENST00000420274	ENST00000399881		TCGA	RV	BRCA	TCGA-C8-A12X-01A	PLEKHA2	chr8	38759410	+	KCNU1	chr8	36793033	+
intron-intron	ENST00000420274	ENST00000518904		TCGA	RV	BRCA	TCGA-C8-A12X-01A	PLEKHA2	chr8	38759410	+	KCNU1	chr8	36793033	+
intron-3CDS	ENST00000388745	ENST00000399881		TCGA	RV	BRCA	TCGA-C8-A12X-01A	PLEKHA2	chr8	38759410	+	KCNU1	chr8	36793033	+
intron-intron	ENST00000388745	ENST00000518904		TCGA	RV	BRCA	TCGA-C8-A12X-01A	PLEKHA2	chr8	38759410	+	KCNU1	chr8	36793033	+
intron-3CDS	ENST00000455697	ENST00000534526		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000455697	ENST00000531134		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000455697	ENST00000427716		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000455697	ENST00000266482		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000455697	ENST00000546442		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000455697	ENST00000525053		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000455697	ENST00000381025		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000455697	ENST00000472289		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000455697	ENST00000473513		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000445766	ENST00000534526		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000445766	ENST00000531134		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000445766	ENST00000427716		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000445766	ENST00000266482		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000445766	ENST00000546442		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000445766	ENST00000525053		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000445766	ENST00000381025		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000445766	ENST00000472289		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000445766	ENST00000473513		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548696	ENST00000534526		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548696	ENST00000531134		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548696	ENST00000427716		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548696	ENST00000266482		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548696	ENST00000546442		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548696	ENST00000525053		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000548696	ENST00000381025		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000548696	ENST00000472289		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000548696	ENST00000473513		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000345127	ENST00000534526		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000345127	ENST00000531134		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000345127	ENST00000427716		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000345127	ENST00000266482		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000345127	ENST00000546442		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000345127	ENST00000525053		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-intron	ENST00000345127	ENST00000381025		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-intron	ENST00000345127	ENST00000472289		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-intron	ENST00000345127	ENST00000473513		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000552240	ENST00000534526		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000552240	ENST00000531134		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000552240	ENST00000427716		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000552240	ENST00000266482		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000552240	ENST00000546442		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-3CDS	ENST00000552240	ENST00000525053		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000552240	ENST00000381025		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000552240	ENST00000472289		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
intron-intron	ENST00000552240	ENST00000473513		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000552200	ENST00000534526		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000552200	ENST00000531134		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000552200	ENST00000427716		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000552200	ENST00000266482		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000552200	ENST00000546442		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-3CDS	ENST00000552200	ENST00000525053		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-intron	ENST00000552200	ENST00000381025		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-intron	ENST00000552200	ENST00000472289		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5UTR-intron	ENST00000552200	ENST00000473513		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PRICKLE1	chr12	42983267	-	FGD4	chr12	32791589	+
5CDS-5UTR	ENST00000329286	ENST00000416284		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8633325	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000329286	ENST00000551619		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8633325	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000329286	ENST00000550003		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8633325	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000329286	ENST00000551449		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8633325	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000329286	ENST00000549456		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8633325	+	FAM19A2	chr12	62261207	-
Frame-shit	ENST00000262646	ENST00000389327		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000262646	ENST00000389328		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000262646	ENST00000438773		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000262646	ENST00000522504		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000531289	ENST00000389327		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000531289	ENST00000389328		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000531289	ENST00000438773		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000531289	ENST00000522504		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000529579	ENST00000389327		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000529579	ENST00000389328		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000529579	ENST00000438773		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000529579	ENST00000522504		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000530071	ENST00000389327		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000530071	ENST00000389328		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000530071	ENST00000438773		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000530071	ENST00000522504		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAB2A	chr8	61429812	+	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000307439	ENST00000308330		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
5CDS-intron	ENST00000307439	ENST00000541171		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
In-frame	ENST00000342081	ENST00000308330		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
5CDS-intron	ENST00000342081	ENST00000541171		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
Frame-shit	ENST00000395777	ENST00000308330		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
5CDS-intron	ENST00000395777	ENST00000541171		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
In-frame	ENST00000335049	ENST00000308330		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
5CDS-intron	ENST00000335049	ENST00000541171		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
intron-3CDS	ENST00000512591	ENST00000308330		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
intron-intron	ENST00000512591	ENST00000541171		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	RASSF6	chr4	74459168	-	LEMD3	chr12	65639449	+
In-frame	ENST00000372771	ENST00000357214		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	RLF	chr1	40627308	+	SFPQ	chr1	35657130	-
5CDS-intron	ENST00000372771	ENST00000468598		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	RLF	chr1	40627308	+	SFPQ	chr1	35657130	-
5CDS-5UTR	ENST00000361756	ENST00000361525		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000366940		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000361395		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000366938		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000359162		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000493603		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000361756	ENST00000463665		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000361756	ENST00000487276		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000493748		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000361756	ENST00000471371		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000361756	ENST00000391890		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000361756	ENST00000366937		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000361756	ENST00000408911		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000361756	ENST00000360012		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000361525		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000366940		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000361395		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000366938		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000359162		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000493603		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000533380	ENST00000463665		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000533380	ENST00000487276		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000493748		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000533380	ENST00000471371		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000533380	ENST00000391890		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000533380	ENST00000366937		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000533380	ENST00000408911		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000533380	ENST00000360012		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000361525		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000366940		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000361395		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000366938		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000359162		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000493603		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393713	ENST00000463665		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393713	ENST00000487276		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000493748		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393713	ENST00000471371		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393713	ENST00000391890		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393713	ENST00000366937		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393713	ENST00000408911		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393713	ENST00000360012		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000361525		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000366940		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000361395		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000366938		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000359162		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000493603		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-intron	ENST00000490867	ENST00000463665		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-intron	ENST00000490867	ENST00000487276		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000493748		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-5UTR	ENST00000490867	ENST00000471371		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-intron	ENST00000490867	ENST00000391890		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-intron	ENST00000490867	ENST00000366937		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-intron	ENST00000490867	ENST00000408911		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
3UTR-intron	ENST00000490867	ENST00000360012		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000361525		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000366940		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000361395		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000366938		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000359162		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000493603		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-intron	ENST00000545854	ENST00000463665		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-intron	ENST00000545854	ENST00000487276		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000493748		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-5UTR	ENST00000545854	ENST00000471371		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-intron	ENST00000545854	ENST00000391890		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-intron	ENST00000545854	ENST00000366937		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-intron	ENST00000545854	ENST00000408911		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5UTR-intron	ENST00000545854	ENST00000360012		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000361525		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000366940		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000361395		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000366938		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000359162		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000493603		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000530137	ENST00000463665		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000530137	ENST00000487276		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000493748		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000530137	ENST00000471371		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000530137	ENST00000391890		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000530137	ENST00000366937		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000530137	ENST00000408911		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000530137	ENST00000360012		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	RNF121	chr11	71640170	+	ESRRG	chr1	217113015	-
intron-3CDS	ENST00000370202	ENST00000343253		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3CDS	ENST00000370202	ENST00000401026		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3CDS	ENST00000370202	ENST00000338949		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3UTR	ENST00000370202	ENST00000334652		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3UTR	ENST00000370202	ENST00000557479		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-intron	ENST00000370202	ENST00000421014		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
Frame-shit	ENST00000429514	ENST00000343253		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
Frame-shit	ENST00000429514	ENST00000401026		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
Frame-shit	ENST00000429514	ENST00000338949		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
5CDS-3UTR	ENST00000429514	ENST00000334652		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
5CDS-3UTR	ENST00000429514	ENST00000557479		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
5CDS-intron	ENST00000429514	ENST00000421014		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3CDS	ENST00000263893	ENST00000343253		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3CDS	ENST00000263893	ENST00000401026		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3CDS	ENST00000263893	ENST00000338949		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3UTR	ENST00000263893	ENST00000334652		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-3UTR	ENST00000263893	ENST00000557479		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
intron-intron	ENST00000263893	ENST00000421014		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
3UTR-3CDS	ENST00000495272	ENST00000343253		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
3UTR-3CDS	ENST00000495272	ENST00000401026		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
3UTR-3CDS	ENST00000495272	ENST00000338949		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
3UTR-3UTR	ENST00000495272	ENST00000334652		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
3UTR-3UTR	ENST00000495272	ENST00000557479		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
3UTR-intron	ENST00000495272	ENST00000421014		TCGA	RV	BRCA	TCGA-A2-A04U-01A	RWDD3	chr1	95705465	+	CCDC18	chr1	93711662	+
In-frame	ENST00000392476	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000392476	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000392476	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5CDS-intron	ENST00000392476	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000430767	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000430767	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000430767	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5CDS-intron	ENST00000430767	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000564509	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000564509	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000564509	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-intron	ENST00000564509	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000585618	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000585618	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000585618	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5CDS-intron	ENST00000585618	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000413679	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000413679	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000413679	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5CDS-intron	ENST00000413679	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000436233	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000436233	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000436233	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5CDS-intron	ENST00000436233	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000443798	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000443798	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
In-frame	ENST00000443798	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5CDS-intron	ENST00000443798	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000591437	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000591437	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000591437	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-intron	ENST00000591437	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000431431	ENST00000258991		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000431431	ENST00000583097		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-3CDS	ENST00000431431	ENST00000584379		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
intron-intron	ENST00000431431	ENST00000581812		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SEC14L1	chr17	75139741	+	TEX2	chr17	62254831	-
5UTR-3CDS	ENST00000446050	ENST00000454872		TCGA	RV	BRCA	TCGA-A8-A081-01A	SERPINI1	chr3	167453611	+	NAALADL2	chr3	174814580	+
5UTR-3UTR	ENST00000446050	ENST00000473253		TCGA	RV	BRCA	TCGA-A8-A081-01A	SERPINI1	chr3	167453611	+	NAALADL2	chr3	174814580	+
5UTR-3CDS	ENST00000295777	ENST00000454872		TCGA	RV	BRCA	TCGA-A8-A081-01A	SERPINI1	chr3	167453611	+	NAALADL2	chr3	174814580	+
5UTR-3UTR	ENST00000295777	ENST00000473253		TCGA	RV	BRCA	TCGA-A8-A081-01A	SERPINI1	chr3	167453611	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000488374	ENST00000454872		TCGA	RV	BRCA	TCGA-A8-A081-01A	SERPINI1	chr3	167453611	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000488374	ENST00000473253		TCGA	RV	BRCA	TCGA-A8-A081-01A	SERPINI1	chr3	167453611	+	NAALADL2	chr3	174814580	+
3UTR-3CDS	ENST00000393844	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
3UTR-3CDS	ENST00000393844	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000313248	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000313248	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000427851	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000427851	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371740	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371740	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371755	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371755	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371731	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371731	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
3UTR-3CDS	ENST00000393841	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
3UTR-3CDS	ENST00000393841	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371713	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371713	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371724	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371724	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371708	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000371708	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
intron-3CDS	ENST00000472176	ENST00000379802		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
intron-3CDS	ENST00000472176	ENST00000418664		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	SLC29A1	chr6	44201878	+	DSP	chr6	7575528	+
Frame-shit	ENST00000354725	ENST00000444921		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
Frame-shit	ENST00000354725	ENST00000339582		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
Frame-shit	ENST00000354725	ENST00000358373		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
Frame-shit	ENST00000354725	ENST00000405249		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000354725	ENST00000480995		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
intron-3CDS	ENST00000467238	ENST00000444921		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
intron-3CDS	ENST00000467238	ENST00000339582		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
intron-3CDS	ENST00000467238	ENST00000358373		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
intron-3CDS	ENST00000467238	ENST00000405249		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
intron-5UTR	ENST00000467238	ENST00000480995		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	SND1	chr7	127361454	+	GRM8	chr7	126544737	-
Frame-shit	ENST00000374037	ENST00000374023		TCGA	RV	BRCA	TCGA-OL-A66P-01A	SPDEF	chr6	34511797	-	C6orf106	chr6	34574681	-
Frame-shit	ENST00000374037	ENST00000374026		TCGA	RV	BRCA	TCGA-OL-A66P-01A	SPDEF	chr6	34511797	-	C6orf106	chr6	34574681	-
Frame-shit	ENST00000374037	ENST00000374021		TCGA	RV	BRCA	TCGA-OL-A66P-01A	SPDEF	chr6	34511797	-	C6orf106	chr6	34574681	-
Frame-shit	ENST00000544425	ENST00000374023		TCGA	RV	BRCA	TCGA-OL-A66P-01A	SPDEF	chr6	34511797	-	C6orf106	chr6	34574681	-
Frame-shit	ENST00000544425	ENST00000374026		TCGA	RV	BRCA	TCGA-OL-A66P-01A	SPDEF	chr6	34511797	-	C6orf106	chr6	34574681	-
Frame-shit	ENST00000544425	ENST00000374021		TCGA	RV	BRCA	TCGA-OL-A66P-01A	SPDEF	chr6	34511797	-	C6orf106	chr6	34574681	-
Frame-shit	ENST00000369005	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000369005	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000369005	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000369005	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000369005	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000369005	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000369005	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000513429	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000513429	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000513429	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000513429	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000513429	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000513429	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000513429	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515273	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515273	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515273	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515273	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515273	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515273	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000515273	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515603	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515603	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515603	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515603	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515603	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000515603	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000515603	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000453444	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000453444	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000453444	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000453444	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000453444	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000453444	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000453444	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000358010	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000358010	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000358010	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000358010	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000358010	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000358010	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000358010	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000334433	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000334433	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000334433	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000334433	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000334433	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
Frame-shit	ENST00000334433	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-5UTR	ENST00000334433	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369001	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369001	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369001	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369001	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369001	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369001	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-5UTR	ENST00000369001	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369000	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369000	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369000	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369000	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369000	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-3CDS	ENST00000369000	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5UTR-5UTR	ENST00000369000	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000360561	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000360561	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000360561	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000360561	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000360561	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000360561	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-5UTR	ENST00000360561	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000368999	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000368999	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000368999	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000368999	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000368999	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000368999	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-5UTR	ENST00000368999	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000369004	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000369004	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000369004	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000369004	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000369004	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000369004	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-5UTR	ENST00000369004	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000260733	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000260733	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000260733	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000260733	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000260733	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000260733	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-5UTR	ENST00000260733	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000493951	ENST00000369043		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000493951	ENST00000535655		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000493951	ENST00000224652		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000493951	ENST00000369040		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000493951	ENST00000540606		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-3CDS	ENST00000493951	ENST00000543447		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
intron-5UTR	ENST00000493951	ENST00000481784		TCGA	RV	BRCA	TCGA-A8-A07C-01A	TACC2	chr10	123892249	+	ATE1	chr10	123629553	-
5CDS-3UTR	ENST00000263663	ENST00000460736		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000263663	ENST00000379619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000263663	ENST00000264716		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5CDS-5UTR	ENST00000263663	ENST00000545753		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
3UTR-3UTR	ENST00000402170	ENST00000460736		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
3UTR-3UTR	ENST00000402170	ENST00000379619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
3UTR-3UTR	ENST00000402170	ENST00000264716		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
3UTR-5UTR	ENST00000402170	ENST00000545753		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5UTR-3UTR	ENST00000396242	ENST00000460736		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5UTR-3UTR	ENST00000396242	ENST00000379619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5UTR-3UTR	ENST00000396242	ENST00000264716		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
5UTR-5UTR	ENST00000396242	ENST00000545753		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	TAF1B	chr2	9985447	+	FOSL2	chr2	28626974	+
In-frame	ENST00000269142	ENST00000284224		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000269142	ENST00000581714		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000269142	ENST00000580774		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000400466	ENST00000284224		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000400466	ENST00000581714		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000400466	ENST00000580774		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000578121	ENST00000284224		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000578121	ENST00000581714		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000578121	ENST00000580774		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	TAF4B	chr18	23807240	+	CHST9	chr18	24628467	-
In-frame	ENST00000394121	ENST00000504681		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000394121	ENST00000393354		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000394121	ENST00000300404		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000264637	ENST00000504681		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000264637	ENST00000393354		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000264637	ENST00000300404		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000584985	ENST00000504681		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000584985	ENST00000393354		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000584985	ENST00000300404		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000450525	ENST00000504681		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000450525	ENST00000393354		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000450525	ENST00000300404		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000546243	ENST00000504681		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000546243	ENST00000393354		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000546243	ENST00000300404		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	THRA	chr17	38233861	+	B4GALNT2	chr17	47236399	+
In-frame	ENST00000360843	ENST00000241052		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000360843	ENST00000534710		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
In-frame	ENST00000431350	ENST00000241052		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000431350	ENST00000534710		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
In-frame	ENST00000442919	ENST00000241052		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000442919	ENST00000534710		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
Frame-shit	ENST00000521943	ENST00000241052		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000521943	ENST00000534710		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000434911	ENST00000241052		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
intron-intron	ENST00000434911	ENST00000534710		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000486857	ENST00000241052		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
intron-intron	ENST00000486857	ENST00000534710		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	TLK1	chr2	171974249	-	CAT	chr11	34470739	+
Frame-shit	ENST00000588847	ENST00000083182		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000588847	ENST00000592995		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000588061	ENST00000083182		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000588061	ENST00000592995		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000335749	ENST00000083182		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000335749	ENST00000592995		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000301624	ENST00000083182		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000301624	ENST00000592995		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000541771	ENST00000083182		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000541771	ENST00000592995		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
Frame-shit	ENST00000544502	ENST00000083182		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000544502	ENST00000592995		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNRC6C	chr17	76089205	+	APPBP2	chr17	58577848	-
In-frame	ENST00000393066	ENST00000573500		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393066	ENST00000576221		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393066	ENST00000268896		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393066	ENST00000576183		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000393066	ENST00000325214		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
In-frame	ENST00000262294	ENST00000573500		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000262294	ENST00000576221		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000262294	ENST00000268896		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000262294	ENST00000576183		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000262294	ENST00000325214		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5UTR-3CDS	ENST00000376149	ENST00000573500		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000376149	ENST00000576221		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000376149	ENST00000268896		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000376149	ENST00000576183		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5UTR-5UTR	ENST00000376149	ENST00000325214		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
In-frame	ENST00000393065	ENST00000573500		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393065	ENST00000576221		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393065	ENST00000268896		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393065	ENST00000576183		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000393065	ENST00000325214		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
In-frame	ENST00000584889	ENST00000573500		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000584889	ENST00000576221		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000584889	ENST00000268896		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000584889	ENST00000576183		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000584889	ENST00000325214		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	TRIM37	chr17	57183802	-	PCTP	chr17	53844696	+
Frame-shit	ENST00000373830	ENST00000398958		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
Frame-shit	ENST00000373830	ENST00000373833		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
Frame-shit	ENST00000373830	ENST00000373832		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
Frame-shit	ENST00000373830	ENST00000373831		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
5CDS-3UTR	ENST00000373830	ENST00000429051		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
intron-3CDS	ENST00000495995	ENST00000398958		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
intron-3CDS	ENST00000495995	ENST00000373833		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
intron-3CDS	ENST00000495995	ENST00000373832		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
intron-3CDS	ENST00000495995	ENST00000373831		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
intron-3UTR	ENST00000495995	ENST00000429051		TCGA	RV	BRCA	TCGA-C8-A134-01A	TRNAU1AP	chr1	28893925	+	RCC1	chr1	28861562	+
Frame-shit	ENST00000356136	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
5CDS-5UTR	ENST00000356136	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
5CDS-5UTR	ENST00000356136	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
5CDS-intron	ENST00000356136	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000528420	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000528420	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000528420	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000528420	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000533454	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000533454	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000533454	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000533454	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000531818	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000531818	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000531818	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000531818	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000532130	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000532130	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000532130	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000532130	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000539288	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000539288	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000539288	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000539288	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000525872	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000525872	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000525872	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000525872	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-3CDS	ENST00000538870	ENST00000304771		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000538870	ENST00000526740		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-5UTR	ENST00000538870	ENST00000434603		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
intron-intron	ENST00000538870	ENST00000526689		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75319367	-
Frame-shit	ENST00000435505	ENST00000254190		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000435505	ENST00000543813		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
Frame-shit	ENST00000417641	ENST00000254190		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000417641	ENST00000543813		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
intron-3CDS	ENST00000478687	ENST00000254190		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
intron-5UTR	ENST00000478687	ENST00000543813		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
Frame-shit	ENST00000412104	ENST00000254190		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000412104	ENST00000543813		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
Frame-shit	ENST00000340157	ENST00000254190		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000340157	ENST00000543813		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
Frame-shit	ENST00000440705	ENST00000254190		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000440705	ENST00000543813		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	VRK2	chr2	58276102	+	CHSY1	chr15	101719185	-
In-frame	ENST00000369426	ENST00000304842		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
5CDS-3UTR	ENST00000369426	ENST00000480281		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
In-frame	ENST00000235521	ENST00000304842		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
5CDS-3UTR	ENST00000235521	ENST00000480281		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
In-frame	ENST00000537870	ENST00000304842		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
5CDS-3UTR	ENST00000537870	ENST00000480281		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
intron-3CDS	ENST00000497761	ENST00000304842		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
intron-3UTR	ENST00000497761	ENST00000480281		TCGA	RV	BRCA	TCGA-E9-A243-01A	WARS2	chr1	119618973	-	TPST1	chr7	65817492	+
In-frame	ENST00000352645	ENST00000216237		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000352645	ENST00000489136		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41605700	+
In-frame	ENST00000351589	ENST00000216237		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000351589	ENST00000489136		TCGA	RV	BRCA	TCGA-EW-A6SB-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41605700	+
In-frame	ENST00000262096	ENST00000404816		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000354476		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000390003		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000418533		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000402934		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000404525		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000407925		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
In-frame	ENST00000262096	ENST00000272273		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
5CDS-intron	ENST00000262096	ENST00000498013		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	ZDHHC2	chr8	17014362	+	LTBP1	chr2	33572434	+
5UTR-3CDS	ENST00000392676	ENST00000589222		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392676	ENST00000407086		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392676	ENST00000390652		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392676	ENST00000408905		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392676	ENST00000588462		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000392676	ENST00000585744		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000392676	ENST00000588874		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000392676	ENST00000585812		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392677	ENST00000589222		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392677	ENST00000407086		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392677	ENST00000390652		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392677	ENST00000408905		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000392677	ENST00000588462		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000392677	ENST00000585744		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000392677	ENST00000588874		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000392677	ENST00000585812		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-3CDS	ENST00000588877	ENST00000589222		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-3CDS	ENST00000588877	ENST00000407086		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-3CDS	ENST00000588877	ENST00000390652		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-3CDS	ENST00000588877	ENST00000408905		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-3CDS	ENST00000588877	ENST00000588462		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-intron	ENST00000588877	ENST00000585744		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-intron	ENST00000588877	ENST00000588874		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
intron-intron	ENST00000588877	ENST00000585812		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000589609	ENST00000589222		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000589609	ENST00000407086		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000589609	ENST00000390652		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000589609	ENST00000408905		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-3CDS	ENST00000589609	ENST00000588462		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000589609	ENST00000585744		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000589609	ENST00000588874		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
5UTR-intron	ENST00000589609	ENST00000585812		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	ABCA5	chr17	67323193	-	BCAS3	chr17	58786580	+
In-frame	ENST00000504830	ENST00000265069		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
5CDS-5UTR	ENST00000504830	ENST00000510369		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
In-frame	ENST00000352040	ENST00000265069		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
5CDS-5UTR	ENST00000352040	ENST00000510369		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
5UTR-3CDS	ENST00000504582	ENST00000265069		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
5UTR-5UTR	ENST00000504582	ENST00000510369		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
intron-3CDS	ENST00000515401	ENST00000265069		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
intron-5UTR	ENST00000515401	ENST00000510369		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	ADAMTS12	chr5	33662021	-	ZFR	chr5	32356045	-
In-frame	ENST00000327435	ENST00000355849		TCGA	RV	BRCA	TCGA-GI-A2C9-01A	ADI1	chr2	3517628	-	KHDRBS3	chr8	136619198	+
In-frame	ENST00000327435	ENST00000520981		TCGA	RV	BRCA	TCGA-GI-A2C9-01A	ADI1	chr2	3517628	-	KHDRBS3	chr8	136619198	+
5CDS-intron	ENST00000327435	ENST00000522578		TCGA	RV	BRCA	TCGA-GI-A2C9-01A	ADI1	chr2	3517628	-	KHDRBS3	chr8	136619198	+
In-frame	ENST00000382093	ENST00000355849		TCGA	RV	BRCA	TCGA-GI-A2C9-01A	ADI1	chr2	3517628	-	KHDRBS3	chr8	136619198	+
In-frame	ENST00000382093	ENST00000520981		TCGA	RV	BRCA	TCGA-GI-A2C9-01A	ADI1	chr2	3517628	-	KHDRBS3	chr8	136619198	+
5CDS-intron	ENST00000382093	ENST00000522578		TCGA	RV	BRCA	TCGA-GI-A2C9-01A	ADI1	chr2	3517628	-	KHDRBS3	chr8	136619198	+
Frame-shit	ENST00000262198	ENST00000357575		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	ADNP2	chr18	77875533	+	PQLC1	chr18	77703462	-
Frame-shit	ENST00000262198	ENST00000397778		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	ADNP2	chr18	77875533	+	PQLC1	chr18	77703462	-
5CDS-5UTR	ENST00000262198	ENST00000409073		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	ADNP2	chr18	77875533	+	PQLC1	chr18	77703462	-
5CDS-5UTR	ENST00000262198	ENST00000590381		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	ADNP2	chr18	77875533	+	PQLC1	chr18	77703462	-
5CDS-intron	ENST00000262198	ENST00000590895		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	ADNP2	chr18	77875533	+	PQLC1	chr18	77703462	-
intron-intron	ENST00000419304	ENST00000360359		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000419304	ENST00000535627		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000419304	ENST00000470698		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000419572	ENST00000360359		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000419572	ENST00000535627		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000419572	ENST00000470698		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000401412	ENST00000360359		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000401412	ENST00000535627		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000401412	ENST00000470698		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000486219	ENST00000360359		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000486219	ENST00000535627		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000486219	ENST00000470698		TCGA	RV	BRCA	TCGA-B6-A0RV-01A	AGR2	chr7	16832266	-	ANKS1A	chr6	34977682	+
intron-3CDS	ENST00000530124	ENST00000528057		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000530124	ENST00000334205		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000530124	ENST00000294261		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
In-frame	ENST00000257247	ENST00000528057		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
In-frame	ENST00000257247	ENST00000334205		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
In-frame	ENST00000257247	ENST00000294261		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
5UTR-3CDS	ENST00000525875	ENST00000528057		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
5UTR-3CDS	ENST00000525875	ENST00000334205		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
5UTR-3CDS	ENST00000525875	ENST00000294261		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000378024	ENST00000528057		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000378024	ENST00000334205		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000378024	ENST00000294261		TCGA	RV	BRCA	TCGA-A8-A09E-01A	AHNAK	chr11	62259204	-	RPS6KA4	chr11	64132773	+
5CDS-5UTR	ENST00000547776	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000547776	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000547776	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000547776	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-5UTR	ENST00000329257	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000329257	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000329257	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000329257	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-5UTR	ENST00000547010	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000547010	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000547010	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
5CDS-intron	ENST00000547010	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000341752	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000341752	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000341752	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000341752	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000549558	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549558	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549558	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549558	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000550693	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000550693	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000550693	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000550693	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000549025	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549025	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549025	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549025	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000549493	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549493	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549493	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000549493	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000547446	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000547446	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000547446	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000547446	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000333732	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000333732	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000333732	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000333732	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000546568	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000546568	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000546568	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000546568	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000332712	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000332712	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000332712	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000332712	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000546960	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000546960	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000546960	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000546960	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-5UTR	ENST00000550833	ENST00000550187		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000550833	ENST00000547157		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000550833	ENST00000327772		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
intron-intron	ENST00000550833	ENST00000547986		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	ANKS1B	chr12	100048845	-	NDUFA12	chr12	95365396	-
Frame-shit	ENST00000083182	ENST00000389840		TCGA	RV	BRCA	TCGA-C8-A1HL-01A	APPBP2	chr17	58603155	-	DNAH17	chr17	76437281	-
Frame-shit	ENST00000083182	ENST00000585328		TCGA	RV	BRCA	TCGA-C8-A1HL-01A	APPBP2	chr17	58603155	-	DNAH17	chr17	76437281	-
5CDS-intron	ENST00000083182	ENST00000586052		TCGA	RV	BRCA	TCGA-C8-A1HL-01A	APPBP2	chr17	58603155	-	DNAH17	chr17	76437281	-
intron-3CDS	ENST00000592995	ENST00000389840		TCGA	RV	BRCA	TCGA-C8-A1HL-01A	APPBP2	chr17	58603155	-	DNAH17	chr17	76437281	-
intron-3CDS	ENST00000592995	ENST00000585328		TCGA	RV	BRCA	TCGA-C8-A1HL-01A	APPBP2	chr17	58603155	-	DNAH17	chr17	76437281	-
intron-intron	ENST00000592995	ENST00000586052		TCGA	RV	BRCA	TCGA-C8-A1HL-01A	APPBP2	chr17	58603155	-	DNAH17	chr17	76437281	-
5CDS-5UTR	ENST00000310343	ENST00000311172		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000310343	ENST00000409314		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000310343	ENST00000409418		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000310343	ENST00000458644		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000310343	ENST00000409853		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-intron	ENST00000310343	ENST00000409263		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000524655	ENST00000311172		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000524655	ENST00000409314		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000524655	ENST00000409418		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000524655	ENST00000458644		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-5UTR	ENST00000524655	ENST00000409853		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
5CDS-intron	ENST00000524655	ENST00000409263		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000392657	ENST00000311172		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000392657	ENST00000409314		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000392657	ENST00000409418		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000392657	ENST00000458644		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000392657	ENST00000409853		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-intron	ENST00000392657	ENST00000409263		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000527272	ENST00000311172		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000527272	ENST00000409314		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000527272	ENST00000409418		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000527272	ENST00000458644		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-5UTR	ENST00000527272	ENST00000409853		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
intron-intron	ENST00000527272	ENST00000409263		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	ARHGAP32	chr11	129034214	-	FCHSD2	chr11	72794785	-
In-frame	ENST00000319670	ENST00000595618		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
In-frame	ENST00000319670	ENST00000594824		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
In-frame	ENST00000319670	ENST00000397274		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
5CDS-intron	ENST00000319670	ENST00000593411		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
In-frame	ENST00000359920	ENST00000595618		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
In-frame	ENST00000359920	ENST00000594824		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
In-frame	ENST00000359920	ENST00000397274		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
5CDS-intron	ENST00000359920	ENST00000593411		TCGA	RV	BRCA	TCGA-E9-A1NG-01A	ARHGEF18	chr19	7512054	+	MYO9B	chr19	17256207	+
In-frame	ENST00000263620	ENST00000341744		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000263620	ENST00000395816		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000263620	ENST00000347215		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000263620	ENST00000265626		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000263620	ENST00000395814		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000263620	ENST00000472841		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000592216	ENST00000341744		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000592216	ENST00000395816		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000592216	ENST00000347215		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000592216	ENST00000265626		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000592216	ENST00000395814		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000592216	ENST00000472841		TCGA	RV	BRCA	TCGA-BH-A0AU-01A	ARID3A	chr19	968503	+	PMEPA1	chr20	56234753	-
Frame-shit	ENST00000435504	ENST00000380406		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
Frame-shit	ENST00000435504	ENST00000380405		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
Frame-shit	ENST00000435504	ENST00000320027		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
Frame-shit	ENST00000435504	ENST00000445273		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5CDS-5UTR	ENST00000435504	ENST00000429785		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000336112	ENST00000380406		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000336112	ENST00000380405		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000336112	ENST00000320027		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000336112	ENST00000445273		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-5UTR	ENST00000336112	ENST00000429785		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000272341	ENST00000380406		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000272341	ENST00000380405		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000272341	ENST00000320027		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000272341	ENST00000445273		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-5UTR	ENST00000272341	ENST00000429785		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000404843	ENST00000380406		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000404843	ENST00000380405		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000404843	ENST00000320027		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000404843	ENST00000445273		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-5UTR	ENST00000404843	ENST00000429785		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000497092	ENST00000380406		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000497092	ENST00000380405		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000497092	ENST00000320027		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-3CDS	ENST00000497092	ENST00000445273		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
intron-5UTR	ENST00000497092	ENST00000429785		TCGA	RV	BRCA	TCGA-AR-A24H-01A	ASXL2	chr2	26101035	-	HSPH1	chr13	31733000	-
5UTR-3CDS	ENST00000244769	ENST00000274901		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000244769	ENST00000398661		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000244769	ENST00000370850		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000244769	ENST00000508459		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000244769	ENST00000308161		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000244769	ENST00000428842		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-intron	ENST00000244769	ENST00000358072		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-intron	ENST00000244769	ENST00000507223		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000436367	ENST00000274901		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000436367	ENST00000398661		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000436367	ENST00000370850		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000436367	ENST00000508459		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000436367	ENST00000308161		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-3CDS	ENST00000436367	ENST00000428842		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-intron	ENST00000436367	ENST00000358072		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
5UTR-intron	ENST00000436367	ENST00000507223		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000467008	ENST00000274901		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000467008	ENST00000398661		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000467008	ENST00000370850		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000467008	ENST00000508459		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000467008	ENST00000308161		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-3CDS	ENST00000467008	ENST00000428842		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-intron	ENST00000467008	ENST00000358072		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
intron-intron	ENST00000467008	ENST00000507223		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATXN1	chr6	16486203	-	HMGCLL1	chr6	55406938	-
In-frame	ENST00000343307	ENST00000431530		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
In-frame	ENST00000343307	ENST00000380808		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
5CDS-intron	ENST00000343307	ENST00000542829		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
5CDS-intron	ENST00000343307	ENST00000400542		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
intron-3CDS	ENST00000461652	ENST00000431530		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
intron-3CDS	ENST00000461652	ENST00000380808		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
intron-intron	ENST00000461652	ENST00000542829		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
intron-intron	ENST00000461652	ENST00000400542		TCGA	RV	BRCA	TCGA-BH-A0HB-01A	B3GALTL	chr13	31898032	+	MTUS2	chr13	30014120	+
Frame-shit	ENST00000589222	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
Frame-shit	ENST00000407086	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
Frame-shit	ENST00000390652	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
Frame-shit	ENST00000408905	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
Frame-shit	ENST00000588462	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
intron-3CDS	ENST00000585744	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
intron-3CDS	ENST00000588874	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
intron-3CDS	ENST00000585812	ENST00000371244		TCGA	RV	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57140054	+
Frame-shit	ENST00000337565	ENST00000409257		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000337565	ENST00000589256		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000337565	ENST00000588800		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000337565	ENST00000591952		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000337565	ENST00000327898		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000337565	ENST00000586731		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
5CDS-intron	ENST00000337565	ENST00000589664		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-3CDS	ENST00000393253	ENST00000409257		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-3CDS	ENST00000393253	ENST00000589256		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-3CDS	ENST00000393253	ENST00000588800		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-3CDS	ENST00000393253	ENST00000591952		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-3CDS	ENST00000393253	ENST00000327898		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-3CDS	ENST00000393253	ENST00000586731		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
intron-intron	ENST00000393253	ENST00000589664		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000357757	ENST00000409257		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000357757	ENST00000589256		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000357757	ENST00000588800		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000357757	ENST00000591952		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000357757	ENST00000327898		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000357757	ENST00000586731		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
5CDS-intron	ENST00000357757	ENST00000589664		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000308659	ENST00000409257		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000308659	ENST00000589256		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000308659	ENST00000588800		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000308659	ENST00000591952		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000308659	ENST00000327898		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000308659	ENST00000586731		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
5CDS-intron	ENST00000308659	ENST00000589664		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000393256	ENST00000409257		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000393256	ENST00000589256		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000393256	ENST00000588800		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000393256	ENST00000591952		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000393256	ENST00000327898		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000393256	ENST00000586731		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
5CDS-intron	ENST00000393256	ENST00000589664		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000405953	ENST00000409257		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000405953	ENST00000589256		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000405953	ENST00000588800		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000405953	ENST00000591952		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000405953	ENST00000327898		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
Frame-shit	ENST00000405953	ENST00000586731		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
5CDS-intron	ENST00000405953	ENST00000589664		TCGA	RV	BRCA	TCGA-BH-A18Q-01A	BCL2L11	chr2	111881716	+	AFMID	chr17	76187051	+
In-frame	ENST00000334746	ENST00000416753		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
In-frame	ENST00000334746	ENST00000013070		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
Frame-shit	ENST00000554565	ENST00000416753		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
Frame-shit	ENST00000554565	ENST00000013070		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3CDS	ENST00000393170	ENST00000416753		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3CDS	ENST00000393170	ENST00000013070		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3CDS	ENST00000298896	ENST00000416753		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3CDS	ENST00000298896	ENST00000013070		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3CDS	ENST00000555525	ENST00000416753		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3CDS	ENST00000555525	ENST00000013070		TCGA	RV	BRCA	TCGA-AC-A23H-01A	BTBD7	chr14	93730131	-	UBR7	chr14	93688659	+
intron-3UTR	ENST00000593699	ENST00000464755		TCGA	RV	BRCA	TCGA-AO-A03P-01A	C10orf11	chr10	77198252	+	CYP2C19	chr10	96609674	+
intron-3UTR	ENST00000593699	ENST00000371321		TCGA	RV	BRCA	TCGA-AO-A03P-01A	C10orf11	chr10	77198252	+	CYP2C19	chr10	96609674	+
intron-3UTR	ENST00000372499	ENST00000464755		TCGA	RV	BRCA	TCGA-AO-A03P-01A	C10orf11	chr10	77198252	+	CYP2C19	chr10	96609674	+
intron-3UTR	ENST00000372499	ENST00000371321		TCGA	RV	BRCA	TCGA-AO-A03P-01A	C10orf11	chr10	77198252	+	CYP2C19	chr10	96609674	+
intron-3UTR	ENST00000496424	ENST00000464755		TCGA	RV	BRCA	TCGA-AO-A03P-01A	C10orf11	chr10	77198252	+	CYP2C19	chr10	96609674	+
intron-3UTR	ENST00000496424	ENST00000371321		TCGA	RV	BRCA	TCGA-AO-A03P-01A	C10orf11	chr10	77198252	+	CYP2C19	chr10	96609674	+
5CDS-3UTR	ENST00000438132	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
5CDS-3UTR	ENST00000542263	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
5CDS-3UTR	ENST00000417362	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
5CDS-3UTR	ENST00000251143	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
5CDS-3UTR	ENST00000543152	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
5CDS-3UTR	ENST00000448695	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
intron-3UTR	ENST00000544275	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
intron-3UTR	ENST00000538853	ENST00000546162		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	C16orf62	chr16	19644494	+	ABCC6P1	chr16	18593728	+
In-frame	ENST00000252032	ENST00000368482		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
In-frame	ENST00000252032	ENST00000368480		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
5CDS-3UTR	ENST00000252032	ENST00000479937		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
intron-3CDS	ENST00000453730	ENST00000368482		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
intron-3CDS	ENST00000453730	ENST00000368480		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
intron-3UTR	ENST00000453730	ENST00000479937		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
intron-3CDS	ENST00000498079	ENST00000368482		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
intron-3CDS	ENST00000498079	ENST00000368480		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
intron-3UTR	ENST00000498079	ENST00000479937		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	C20orf194	chr20	3354695	-	TDRD10	chr1	154514500	+
In-frame	ENST00000407673	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000407673	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000407673	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000401624	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000401624	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000401624	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000404898	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000404898	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000404898	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000400164	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000400164	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000400164	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000336649	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000336649	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000336649	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000402142	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
In-frame	ENST00000402142	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000402142	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
intron-3CDS	ENST00000471970	ENST00000216160		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
intron-3CDS	ENST00000471970	ENST00000331454		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
intron-intron	ENST00000471970	ENST00000488859		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	CACNA1I	chr22	40058440	+	TAB1	chr22	39822708	+
intron-5UTR	ENST00000256343	ENST00000435962		TCGA	RV	BRCA	TCGA-A7-A13G-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-5UTR	ENST00000256343	ENST00000340892		TCGA	RV	BRCA	TCGA-A7-A13G-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-5UTR	ENST00000256343	ENST00000360594		TCGA	RV	BRCA	TCGA-A7-A13G-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-5UTR	ENST00000256343	ENST00000556018		TCGA	RV	BRCA	TCGA-A7-A13G-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
intron-intron	ENST00000256343	ENST00000555302		TCGA	RV	BRCA	TCGA-A7-A13G-01A	CATSPERB	chr14	92246920	-	TC2N	chr14	92280169	-
In-frame	ENST00000256443	ENST00000256442		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	CDK7	chr5	68531280	+	CCNB1	chr5	68463735	+
In-frame	ENST00000514676	ENST00000256442		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	CDK7	chr5	68531280	+	CCNB1	chr5	68463735	+
5UTR-3CDS	ENST00000502604	ENST00000256442		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	CDK7	chr5	68531280	+	CCNB1	chr5	68463735	+
3UTR-3CDS	ENST00000513629	ENST00000256442		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	CDK7	chr5	68531280	+	CCNB1	chr5	68463735	+
5CDS-5UTR	ENST00000572681	ENST00000368301		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000572681	ENST00000361308		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000572681	ENST00000347559		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000572681	ENST00000368300		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000572681	ENST00000368299		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000572681	ENST00000448611		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000572681	ENST00000368297		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000572681	ENST00000473598		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000572681	ENST00000392353		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000572681	ENST00000496738		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-5UTR	ENST00000575839	ENST00000368301		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-5UTR	ENST00000575839	ENST00000361308		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-5UTR	ENST00000575839	ENST00000347559		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-5UTR	ENST00000575839	ENST00000368300		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-5UTR	ENST00000575839	ENST00000368299		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-intron	ENST00000575839	ENST00000448611		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-intron	ENST00000575839	ENST00000368297		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-intron	ENST00000575839	ENST00000473598		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-intron	ENST00000575839	ENST00000392353		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
intron-intron	ENST00000575839	ENST00000496738		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000160740	ENST00000368301		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000160740	ENST00000361308		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000160740	ENST00000347559		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000160740	ENST00000368300		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000160740	ENST00000368299		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000160740	ENST00000448611		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000160740	ENST00000368297		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000160740	ENST00000473598		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000160740	ENST00000392353		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000160740	ENST00000496738		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000575354	ENST00000368301		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000575354	ENST00000361308		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000575354	ENST00000347559		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000575354	ENST00000368300		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-5UTR	ENST00000575354	ENST00000368299		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000575354	ENST00000448611		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000575354	ENST00000368297		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000575354	ENST00000473598		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000575354	ENST00000392353		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5CDS-intron	ENST00000575354	ENST00000496738		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	CIC	chr19	42798456	+	LMNA	chr1	156084592	+
5UTR-3CDS	ENST00000317147	ENST00000381352		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000317147	ENST00000405154		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000317147	ENST00000542865		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000317147	ENST00000541490		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000317147	ENST00000282884		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-intron	ENST00000317147	ENST00000538081		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000569240	ENST00000381352		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000569240	ENST00000405154		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000569240	ENST00000542865		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000569240	ENST00000541490		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000569240	ENST00000282884		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-intron	ENST00000569240	ENST00000538081		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000441024	ENST00000381352		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000441024	ENST00000405154		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000441024	ENST00000542865		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000441024	ENST00000541490		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-3CDS	ENST00000441024	ENST00000282884		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
5UTR-intron	ENST00000441024	ENST00000538081		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000569732	ENST00000381352		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000569732	ENST00000405154		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000569732	ENST00000542865		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000569732	ENST00000541490		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000569732	ENST00000282884		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-intron	ENST00000569732	ENST00000538081		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000245138	ENST00000381352		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000245138	ENST00000405154		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000245138	ENST00000542865		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000245138	ENST00000541490		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-3CDS	ENST00000245138	ENST00000282884		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
intron-intron	ENST00000245138	ENST00000538081		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	CNOT1	chr16	58663632	-	RASSF8	chr12	26217431	+
In-frame	ENST00000264093	ENST00000409561		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DGUOK	chr2	74154179	+	C2orf78	chr2	74040604	+
In-frame	ENST00000348222	ENST00000409561		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DGUOK	chr2	74154179	+	C2orf78	chr2	74040604	+
3UTR-3CDS	ENST00000462685	ENST00000409561		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DGUOK	chr2	74154179	+	C2orf78	chr2	74040604	+
In-frame	ENST00000356837	ENST00000409561		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DGUOK	chr2	74154179	+	C2orf78	chr2	74040604	+
5UTR-5UTR	ENST00000295373	ENST00000276570		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	DHX57	chr2	39102929	-	DNAJC5B	chr8	66955723	+
5UTR-3UTR	ENST00000295373	ENST00000519330		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	DHX57	chr2	39102929	-	DNAJC5B	chr8	66955723	+
intron-5UTR	ENST00000479345	ENST00000276570		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	DHX57	chr2	39102929	-	DNAJC5B	chr8	66955723	+
intron-3UTR	ENST00000479345	ENST00000519330		TCGA	RV	BRCA	TCGA-LL-A7SZ-01A	DHX57	chr2	39102929	-	DNAJC5B	chr8	66955723	+
5CDS-5UTR	ENST00000585892	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000585892	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-5UTR	ENST00000314646	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000314646	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-5UTR	ENST00000359692	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000359692	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-5UTR	ENST00000389253	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000389253	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-5UTR	ENST00000355667	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000355667	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-5UTR	ENST00000408974	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000408974	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-5UTR	ENST00000591819	ENST00000401449		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000548489		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000551557		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000343820		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000407501		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000405385		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000551402		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000577543		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000551541		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000345133		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000330513		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000400167		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
intron-intron	ENST00000591819	ENST00000472042		TCGA	RV	BRCA	TCGA-UU-A93S-01A	DNM2	chr19	10870487	+	TGIF1	chr18	3418141	+
5CDS-intron	ENST00000251157	ENST00000316485		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000251157	ENST00000371158		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000251157	ENST00000543708		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000251157	ENST00000545929		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000251157	ENST00000472512		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000340370	ENST00000316485		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000340370	ENST00000371158		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000340370	ENST00000543708		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000340370	ENST00000545929		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
5CDS-intron	ENST00000340370	ENST00000472512		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000489185	ENST00000316485		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000489185	ENST00000371158		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000489185	ENST00000543708		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000489185	ENST00000545929		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000489185	ENST00000472512		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000404627	ENST00000316485		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000404627	ENST00000371158		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000404627	ENST00000543708		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000404627	ENST00000545929		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
intron-intron	ENST00000404627	ENST00000472512		TCGA	RV	BRCA	TCGA-AR-A24Z-01A	DOCK7	chr1	62958375	-	INADL	chr1	62626580	+
Frame-shit	ENST00000309117	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000309117	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000309117	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000309117	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000309117	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000309117	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-3CDS	ENST00000399000	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-3CDS	ENST00000399000	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000399000	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000399000	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000399000	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000399000	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-3CDS	ENST00000288304	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-3CDS	ENST00000288304	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000288304	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000288304	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000288304	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5UTR-intron	ENST00000288304	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000539844	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000539844	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000539844	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000539844	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000539844	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000539844	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000399001	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000399001	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000399001	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000399001	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000399001	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000399001	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000476950	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000476950	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000476950	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000476950	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000476950	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000476950	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000398998	ENST00000217246		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000398998	ENST00000310348		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000398998	ENST00000464883		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000398998	ENST00000402914		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000398998	ENST00000378058		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000398998	ENST00000407045		TCGA	RV	BRCA	TCGA-C8-A130-01A	DSCR3	chr21	38639539	-	MACROD2	chr20	16021846	+
In-frame	ENST00000421834	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000421834	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
5CDS-intron	ENST00000421834	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
In-frame	ENST00000370769	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000370769	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
5CDS-intron	ENST00000370769	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
In-frame	ENST00000312431	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000312431	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
5CDS-intron	ENST00000312431	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
In-frame	ENST00000370754	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000370754	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
5CDS-intron	ENST00000370754	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
In-frame	ENST00000370788	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000370788	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
5CDS-intron	ENST00000370788	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
In-frame	ENST00000361203	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000361203	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
5CDS-intron	ENST00000361203	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000244364	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000244364	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000244364	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000446842	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000446842	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000446842	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000340834	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000340834	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000340834	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370765	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370765	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000370765	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000518935	ENST00000325722		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000518935	ENST00000373266		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000518935	ENST00000485551		TCGA	RV	BRCA	TCGA-AN-A04A-01A	DST	chr6	56564451	-	KIAA0319L	chr1	35900682	-
Frame-shit	ENST00000532982	ENST00000319445		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000532982	ENST00000360242		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000532982	ENST00000584156		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000532982	ENST00000358653		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000532982	ENST00000577772		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000227451	ENST00000319445		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000227451	ENST00000360242		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000227451	ENST00000584156		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000227451	ENST00000358653		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000227451	ENST00000577772		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000531902	ENST00000319445		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000531902	ENST00000360242		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000531902	ENST00000584156		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000531902	ENST00000358653		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000531902	ENST00000577772		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	DTX4	chr11	58959723	+	CCDC102B	chr18	66721267	+
In-frame	ENST00000322349	ENST00000553106		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	EEA1	chr12	93258636	-	PAH	chr12	103249110	-
In-frame	ENST00000322349	ENST00000307000		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	EEA1	chr12	93258636	-	PAH	chr12	103249110	-
5CDS-5UTR	ENST00000322349	ENST00000551988		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	EEA1	chr12	93258636	-	PAH	chr12	103249110	-
5UTR-3CDS	ENST00000547833	ENST00000553106		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	EEA1	chr12	93258636	-	PAH	chr12	103249110	-
5UTR-3CDS	ENST00000547833	ENST00000307000		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	EEA1	chr12	93258636	-	PAH	chr12	103249110	-
5UTR-5UTR	ENST00000547833	ENST00000551988		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	EEA1	chr12	93258636	-	PAH	chr12	103249110	-
5CDS-intron	ENST00000455140	ENST00000269881		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000455140	ENST00000602234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000248070	ENST00000269881		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000248070	ENST00000602234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000535753	ENST00000269881		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000535753	ENST00000602234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000594975	ENST00000269881		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000594975	ENST00000602234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
intron-intron	ENST00000602009	ENST00000269881		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
intron-intron	ENST00000602009	ENST00000602234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000597937	ENST00000269881		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5CDS-intron	ENST00000597937	ENST00000602234		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16689220	-
5UTR-3CDS	ENST00000284037	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000284037	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000284037	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380943	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380943	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380943	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000416865	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000416865	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000416865	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380935	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380935	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380935	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380939	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380939	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380939	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380936	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380936	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380936	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380938	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380938	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000380938	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000511297	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000511297	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000511297	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000506030	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000506030	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
5UTR-3CDS	ENST00000506030	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000508515	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000508515	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000508515	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000503913	ENST00000261308		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000503913	ENST00000535264		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
intron-3CDS	ENST00000503913	ENST00000538977		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	ERBB2IP	chr5	65222634	+	PPWD1	chr5	64872706	+
Frame-shit	ENST00000284037	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000284037	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000284037	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000284037	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380943	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380943	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380943	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380943	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000416865	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000416865	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000416865	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000416865	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380935	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380935	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380935	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380935	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380939	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380939	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380939	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380939	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380936	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380936	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380936	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380936	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380938	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380938	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380938	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000380938	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000511297	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000511297	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000511297	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000511297	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000506030	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000506030	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000506030	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000506030	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000508515	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000508515	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000508515	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
Frame-shit	ENST00000508515	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
intron-3CDS	ENST00000503913	ENST00000379091		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
intron-3CDS	ENST00000503913	ENST00000430430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
intron-3CDS	ENST00000503913	ENST00000455036		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
intron-3CDS	ENST00000503913	ENST00000426744		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ERBB2IP	chr5	65290692	+	ZBTB10	chr8	81411729	+
In-frame	ENST00000269214	ENST00000289119		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
5CDS-intron	ENST00000269214	ENST00000580981		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
5CDS-5UTR	ENST00000269214	ENST00000578270		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
5CDS-intron	ENST00000269214	ENST00000579875		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
intron-3CDS	ENST00000580101	ENST00000289119		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
intron-intron	ENST00000580101	ENST00000580981		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
intron-5UTR	ENST00000580101	ENST00000578270		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
intron-intron	ENST00000580101	ENST00000579875		TCGA	RV	BRCA	TCGA-D8-A27H-01A	ESCO1	chr18	19140820	-	ABHD3	chr18	19263926	-
In-frame	ENST00000440973	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000440973	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000440973	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
In-frame	ENST00000338799	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000338799	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000338799	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
intron-3CDS	ENST00000456483	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
intron-intron	ENST00000456483	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
intron-3UTR	ENST00000456483	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
In-frame	ENST00000443427	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000443427	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000443427	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
In-frame	ENST00000206249	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000206249	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000206249	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
intron-3CDS	ENST00000406599	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
intron-intron	ENST00000406599	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
intron-3UTR	ENST00000406599	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
In-frame	ENST00000427531	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000427531	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000427531	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
3UTR-3CDS	ENST00000482101	ENST00000367321		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
3UTR-intron	ENST00000482101	ENST00000367307		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
3UTR-3UTR	ENST00000482101	ENST00000478643		TCGA	RV	BRCA	TCGA-BH-A5J0-01A	ESR1	chr6	152265643	+	MTHFD1L	chr6	151330955	+
5CDS-5UTR	ENST00000272427	ENST00000474528		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
5CDS-5UTR	ENST00000272427	ENST00000272433		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
5CDS-5UTR	ENST00000272427	ENST00000410065		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
intron-5UTR	ENST00000490919	ENST00000474528		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
intron-5UTR	ENST00000490919	ENST00000272433		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
intron-5UTR	ENST00000490919	ENST00000410065		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
5CDS-5UTR	ENST00000410104	ENST00000474528		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
5CDS-5UTR	ENST00000410104	ENST00000272433		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
5CDS-5UTR	ENST00000410104	ENST00000410065		TCGA	RV	BRCA	TCGA-A7-A13D-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73250343	-
In-frame	ENST00000515037	ENST00000404984		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000515037	ENST00000402050		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000515037	ENST00000438376		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000515037	ENST00000325979		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
5CDS-intron	ENST00000515037	ENST00000497572		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000358869	ENST00000404984		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000358869	ENST00000402050		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000358869	ENST00000438376		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000358869	ENST00000325979		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
5CDS-intron	ENST00000358869	ENST00000497572		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
3UTR-3CDS	ENST00000513966	ENST00000404984		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
3UTR-3CDS	ENST00000513966	ENST00000402050		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
3UTR-3CDS	ENST00000513966	ENST00000438376		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
3UTR-3CDS	ENST00000513966	ENST00000325979		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
3UTR-intron	ENST00000513966	ENST00000497572		TCGA	RV	BRCA	TCGA-AO-A129-01A	FAM114A1	chr4	38937411	+	IQCE	chr7	2629541	+
In-frame	ENST00000064778	ENST00000310653		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000064778	ENST00000336083		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000064778	ENST00000536566		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000064778	ENST00000541588		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000450446	ENST00000310653		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000450446	ENST00000336083		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000450446	ENST00000536566		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000450446	ENST00000541588		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000356467	ENST00000310653		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000356467	ENST00000336083		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000356467	ENST00000536566		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000356467	ENST00000541588		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	FAM168A	chr11	73179450	-	RAB6A	chr11	73390765	-
In-frame	ENST00000583610	ENST00000336898		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000376282		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000529095		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000526177		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000533784		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000529721		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000533805		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000583610	ENST00000443276		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
In-frame	ENST00000394294	ENST00000336898		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000376282		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000529095		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000526177		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000533784		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000529721		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000533805		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000394294	ENST00000443276		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
In-frame	ENST00000264658	ENST00000336898		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000376282		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000529095		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000526177		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000533784		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000529721		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000533805		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000264658	ENST00000443276		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
In-frame	ENST00000577399	ENST00000336898		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000376282		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000529095		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000526177		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000533784		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000529721		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000533805		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
5CDS-intron	ENST00000577399	ENST00000443276		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	FBXL20	chr17	37457254	-	GDPD5	chr11	75167861	-
intron-3CDS	ENST00000478194	ENST00000327155		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
intron-3CDS	ENST00000478194	ENST00000399722		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
intron-3CDS	ENST00000478194	ENST00000399725		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
intron-3CDS	ENST00000478194	ENST00000360790		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
intron-3CDS	ENST00000478194	ENST00000581687		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000217289	ENST00000327155		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000217289	ENST00000399722		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000217289	ENST00000399725		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
In-frame	ENST00000217289	ENST00000360790		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000217289	ENST00000581687		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
In-frame	ENST00000536936	ENST00000327155		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000536936	ENST00000399722		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000536936	ENST00000399725		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000536936	ENST00000360790		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000536936	ENST00000581687		TCGA	RV	BRCA	TCGA-BH-A203-01A	FERMT1	chr20	6075586	-	RBBP8	chr18	20606106	+
Frame-shit	ENST00000445105	ENST00000358763		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
Frame-shit	ENST00000445105	ENST00000332840		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
5CDS-intron	ENST00000445105	ENST00000467095		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000264730	ENST00000358763		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000264730	ENST00000332840		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
5CDS-intron	ENST00000264730	ENST00000467095		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000454309	ENST00000358763		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000454309	ENST00000332840		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
5CDS-intron	ENST00000454309	ENST00000467095		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000450716	ENST00000358763		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000450716	ENST00000332840		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
5CDS-intron	ENST00000450716	ENST00000467095		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
Frame-shit	ENST00000430714	ENST00000358763		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
Frame-shit	ENST00000430714	ENST00000332840		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
5CDS-intron	ENST00000430714	ENST00000467095		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
intron-3CDS	ENST00000466144	ENST00000358763		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
intron-3CDS	ENST00000466144	ENST00000332840		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
intron-intron	ENST00000466144	ENST00000467095		TCGA	RV	BRCA	TCGA-AR-A0TP-01A	FGF12	chr3	192053150	-	SYN3	chr22	32992722	-
In-frame	ENST00000372572	ENST00000539719		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000372572	ENST00000490959		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000372572	ENST00000373428		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
Frame-shit	ENST00000372573	ENST00000539719		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000372573	ENST00000490959		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000372573	ENST00000373428		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
Frame-shit	ENST00000361346	ENST00000539719		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000361346	ENST00000490959		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000361346	ENST00000373428		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
Frame-shit	ENST00000361776	ENST00000539719		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000361776	ENST00000490959		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000361776	ENST00000373428		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
Frame-shit	ENST00000545068	ENST00000539719		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000545068	ENST00000490959		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
5CDS-intron	ENST00000545068	ENST00000373428		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
intron-3CDS	ENST00000372571	ENST00000539719		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
intron-intron	ENST00000372571	ENST00000490959		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
intron-intron	ENST00000372571	ENST00000373428		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	FOXJ3	chr1	42730786	-	ZNF362	chr1	33741701	+
In-frame	ENST00000543760	ENST00000407071		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
In-frame	ENST00000543760	ENST00000366518		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
5CDS-intron	ENST00000543760	ENST00000479506		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
In-frame	ENST00000366672	ENST00000407071		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
In-frame	ENST00000366672	ENST00000366518		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
5CDS-intron	ENST00000366672	ENST00000479506		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
In-frame	ENST00000541865	ENST00000407071		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
In-frame	ENST00000541865	ENST00000366518		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
5CDS-intron	ENST00000541865	ENST00000479506		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
intron-3CDS	ENST00000485438	ENST00000407071		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
intron-3CDS	ENST00000485438	ENST00000366518		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
intron-intron	ENST00000485438	ENST00000479506		TCGA	RV	BRCA	TCGA-A8-A079-01A	GALNT2	chr1	230339036	+	KIF26B	chr1	245847535	+
intron-intron	ENST00000331872	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000331872	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000331872	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000331872	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000331872	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417584	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417584	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417584	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417584	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417584	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000311223	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000311223	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000311223	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000311223	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000311223	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491322	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491322	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491322	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491322	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491322	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000339526	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000339526	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000339526	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000339526	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000339526	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	GLUL	chr1	182352029	-	NDUFV1	chr11	67375697	+
In-frame	ENST00000461183	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000461183	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000461183	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000461183	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000305690	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000305690	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000305690	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000305690	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000473032	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000473032	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000473032	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000473032	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000354773	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000354773	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000354773	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000354773	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000471180	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000471180	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000471180	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000471180	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000436784	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000436784	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000436784	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000436784	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000477382	ENST00000469224		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000477382	ENST00000394965		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000477382	ENST00000310271		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000477382	ENST00000484952		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	GLYCTK	chr3	52325127	+	ALAS1	chr3	52245299	+
In-frame	ENST00000233099	ENST00000341911		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000233099	ENST00000316528		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000233099	ENST00000442647		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000233099	ENST00000367814		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000233099	ENST00000525369		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000233099	ENST00000534121		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000233099	ENST00000533624		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-intron	ENST00000233099	ENST00000534044		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-intron	ENST00000233099	ENST00000528774		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-3UTR	ENST00000233099	ENST00000531845		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-3UTR	ENST00000233099	ENST00000527615		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-intron	ENST00000233099	ENST00000420123		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000341911		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000316528		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000442647		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000367814		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000525369		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000534121		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
In-frame	ENST00000354531	ENST00000533624		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-intron	ENST00000354531	ENST00000534044		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-intron	ENST00000354531	ENST00000528774		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-3UTR	ENST00000354531	ENST00000531845		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-3UTR	ENST00000354531	ENST00000527615		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
5CDS-intron	ENST00000354531	ENST00000420123		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	HEATR5B	chr2	37215789	-	MYB	chr6	135522777	+
Frame-shit	ENST00000358691	ENST00000580974		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
In-frame	ENST00000358691	ENST00000299954		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000358691	ENST00000335257		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000358691	ENST00000581322		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000580168	ENST00000580974		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
In-frame	ENST00000580168	ENST00000299954		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000580168	ENST00000335257		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000580168	ENST00000581322		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000580662	ENST00000580974		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000580662	ENST00000299954		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000580662	ENST00000335257		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000580662	ENST00000581322		TCGA	RV	BRCA	TCGA-E2-A1B5-01A	HELZ	chr17	65103285	-	PITPNC1	chr17	65688688	+
5CDS-intron	ENST00000392226	ENST00000422945		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000556068		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000554442		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000328724		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000350249		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000445439		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000334743		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000557095		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000556260		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000556946		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000392226	ENST00000557714		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000422945		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000556068		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000554442		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000328724		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000350249		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000445439		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000334743		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000557095		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000556260		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000556946		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000262626	ENST00000557714		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000422945		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000556068		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000554442		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000328724		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000350249		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000445439		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000334743		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000557095		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000556260		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000556946		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000597419	ENST00000557714		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000422945		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000556068		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000554442		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000328724		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000350249		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000445439		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000334743		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000557095		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000556260		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000556946		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000600675	ENST00000557714		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	HPN	chr19	35533426	+	PPP2R5C	chr14	102302506	+
Frame-shit	ENST00000263383	ENST00000342784		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
5CDS-intron	ENST00000263383	ENST00000600440		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
5CDS-5UTR	ENST00000263383	ENST00000600252		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
In-frame	ENST00000534378	ENST00000342784		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
5CDS-intron	ENST00000534378	ENST00000600440		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
5CDS-5UTR	ENST00000534378	ENST00000600252		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
intron-3CDS	ENST00000531635	ENST00000342784		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
intron-intron	ENST00000531635	ENST00000600440		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
intron-5UTR	ENST00000531635	ENST00000600252		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	ILVBL	chr19	15226963	-	SYDE1	chr19	15219867	+
5UTR-3CDS	ENST00000316485	ENST00000477717		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
5UTR-intron	ENST00000316485	ENST00000496845		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
5UTR-3CDS	ENST00000371158	ENST00000477717		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
5UTR-intron	ENST00000371158	ENST00000496845		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
intron-3CDS	ENST00000543708	ENST00000477717		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
intron-intron	ENST00000543708	ENST00000496845		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
intron-3CDS	ENST00000545929	ENST00000477717		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
intron-intron	ENST00000545929	ENST00000496845		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
intron-3CDS	ENST00000472512	ENST00000477717		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
intron-intron	ENST00000472512	ENST00000496845		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	INADL	chr1	62208227	+	ST6GALNAC5	chr1	77528660	+
5UTR-3CDS	ENST00000325324	ENST00000381884		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
5UTR-3UTR	ENST00000325324	ENST00000545981		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
5UTR-5UTR	ENST00000325324	ENST00000493190		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-3CDS	ENST00000409296	ENST00000381884		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-3UTR	ENST00000409296	ENST00000545981		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-5UTR	ENST00000409296	ENST00000493190		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-3CDS	ENST00000409534	ENST00000381884		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-3UTR	ENST00000409534	ENST00000545981		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-5UTR	ENST00000409534	ENST00000493190		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-3CDS	ENST00000512177	ENST00000381884		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-3UTR	ENST00000512177	ENST00000545981		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
intron-5UTR	ENST00000512177	ENST00000493190		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	IPO11	chr5	61708756	+	CENPJ	chr13	25459524	-
In-frame	ENST00000155840	ENST00000182290		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5CDS-3UTR	ENST00000155840	ENST00000483227		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5CDS-3UTR	ENST00000155840	ENST00000381121		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5CDS-3UTR	ENST00000155840	ENST00000451520		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
In-frame	ENST00000335475	ENST00000182290		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5CDS-3UTR	ENST00000335475	ENST00000483227		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5CDS-3UTR	ENST00000335475	ENST00000381121		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5CDS-3UTR	ENST00000335475	ENST00000451520		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
intron-3CDS	ENST00000526095	ENST00000182290		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
intron-3UTR	ENST00000526095	ENST00000483227		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
intron-3UTR	ENST00000526095	ENST00000381121		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
intron-3UTR	ENST00000526095	ENST00000451520		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	KCNQ1	chr11	2549248	+	TSPAN32	chr11	2324074	+
5UTR-5UTR	ENST00000159111	ENST00000221671		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
5UTR-5UTR	ENST00000159111	ENST00000594035		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
5UTR-5UTR	ENST00000381759	ENST00000221671		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
5UTR-5UTR	ENST00000381759	ENST00000594035		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
5UTR-5UTR	ENST00000536461	ENST00000221671		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
5UTR-5UTR	ENST00000536461	ENST00000594035		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
intron-5UTR	ENST00000592175	ENST00000221671		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
intron-5UTR	ENST00000592175	ENST00000594035		TCGA	RV	BRCA	TCGA-A7-A13E-01A	KDM4B	chr19	5016350	+	C19orf44	chr19	16611603	+
5UTR-3CDS	ENST00000526589	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
5UTR-3CDS	ENST00000526589	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
5UTR-3CDS	ENST00000527974	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
5UTR-3CDS	ENST00000527974	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
5UTR-3CDS	ENST00000352231	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
5UTR-3CDS	ENST00000352231	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000341872	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000341872	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000450372	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000450372	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000366584	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000366584	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000416919	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000416919	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000323938	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000323938	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000526634	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000526634	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000525042	ENST00000334232		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
intron-3CDS	ENST00000525042	ENST00000359362		TCGA	RV	BRCA	TCGA-BH-A203-01A	LGALS8	chr1	236681584	+	EDARADD	chr1	236645567	+
5CDS-5UTR	ENST00000294304	ENST00000541285		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	LRP5	chr11	68080273	+	ALKBH5	chr17	18098269	+
5CDS-5UTR	ENST00000294304	ENST00000399138		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	LRP5	chr11	68080273	+	ALKBH5	chr17	18098269	+
intron-5UTR	ENST00000529481	ENST00000541285		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	LRP5	chr11	68080273	+	ALKBH5	chr17	18098269	+
intron-5UTR	ENST00000529481	ENST00000399138		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	LRP5	chr11	68080273	+	ALKBH5	chr17	18098269	+
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
In-frame	ENST00000354476	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000390003	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000418533	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000402934	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000404525	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000407925	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	BRCA	TCGA-AR-A24N-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
5UTR-3CDS	ENST00000397752	ENST00000341049		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000397752	ENST00000393470		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000397752	ENST00000405348		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000397752	ENST00000393468		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000397752	ENST00000393467		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000318493	ENST00000341049		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000318493	ENST00000393470		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000318493	ENST00000405348		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000318493	ENST00000393468		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000318493	ENST00000393467		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000436117	ENST00000341049		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000436117	ENST00000393470		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000436117	ENST00000405348		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000436117	ENST00000393468		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000436117	ENST00000393467		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000341049		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000393470		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000405348		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000393468		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000393467		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000341049		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393470		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000405348		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393468		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393467		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	MET	chr7	116312631	+	CAV1	chr7	116199000	+
5CDS-5UTR	ENST00000397752	ENST00000447467		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000397752	ENST00000324972		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000397752	ENST00000537881		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000397752	ENST00000437599		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000397752	ENST00000359388		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000397752	ENST00000413338		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000397752	ENST00000457059		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-intron	ENST00000397752	ENST00000497626		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000447467		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000324972		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000537881		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000437599		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000359388		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000413338		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000318493	ENST00000457059		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-intron	ENST00000318493	ENST00000497626		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000447467		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000324972		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000537881		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000437599		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000359388		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000413338		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-5UTR	ENST00000436117	ENST00000457059		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
5CDS-intron	ENST00000436117	ENST00000497626		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000447467		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000324972		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000537881		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000437599		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000359388		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000413338		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-5UTR	ENST00000495962	ENST00000457059		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
3UTR-intron	ENST00000495962	ENST00000497626		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000447467		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000324972		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000537881		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000437599		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000359388		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000413338		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-5UTR	ENST00000539704	ENST00000457059		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
intron-intron	ENST00000539704	ENST00000497626		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	MET	chr7	116371913	+	DYNC1I1	chr7	95434033	+
In-frame	ENST00000446906	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000446906	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000446906	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000446906	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
5CDS-intron	ENST00000446906	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377072	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377072	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377072	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377072	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
5CDS-intron	ENST00000377072	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000307729	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000307729	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000307729	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000307729	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
5CDS-intron	ENST00000307729	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377059	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377059	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377059	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
In-frame	ENST00000377059	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
5CDS-intron	ENST00000377059	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000495130	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000495130	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000495130	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000495130	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-intron	ENST00000495130	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377100	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377100	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377100	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377100	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-intron	ENST00000377100	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377091	ENST00000518864		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377091	ENST00000522124		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377091	ENST00000517473		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-3CDS	ENST00000377091	ENST00000276467		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
intron-intron	ENST00000377091	ENST00000520697		TCGA	RV	BRCA	TCGA-C8-A278-01A	MLLT10	chr10	22024164	+	SNTG1	chr8	51415338	+
Frame-shit	ENST00000354329	ENST00000265965		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000354329	ENST00000528200		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000354329	ENST00000532265		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
5CDS-intron	ENST00000354329	ENST00000532212		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
intron-3CDS	ENST00000529578	ENST00000265965		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
intron-3CDS	ENST00000529578	ENST00000528200		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
intron-3CDS	ENST00000529578	ENST00000532265		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
intron-intron	ENST00000529578	ENST00000532212		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000533112	ENST00000265965		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000533112	ENST00000528200		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000533112	ENST00000532265		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
5CDS-intron	ENST00000533112	ENST00000532212		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000531253	ENST00000265965		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000531253	ENST00000528200		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000531253	ENST00000532265		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
5CDS-intron	ENST00000531253	ENST00000532212		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000527372	ENST00000265965		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000527372	ENST00000528200		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000527372	ENST00000532265		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
5CDS-intron	ENST00000527372	ENST00000532212		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	MYO18A	chr17	27492960	-	SERGEF	chr11	17899791	-
Frame-shit	ENST00000356056	ENST00000397412		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000356056	ENST00000436138		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000356056	ENST00000293925		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5CDS-intron	ENST00000356056	ENST00000262317		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000444904	ENST00000397412		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000444904	ENST00000436138		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000444904	ENST00000293925		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5CDS-intron	ENST00000444904	ENST00000262317		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000424560	ENST00000397412		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000424560	ENST00000436138		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000424560	ENST00000293925		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5CDS-intron	ENST00000424560	ENST00000262317		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000564571	ENST00000397412		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000564571	ENST00000436138		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
Frame-shit	ENST00000564571	ENST00000293925		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5CDS-intron	ENST00000564571	ENST00000262317		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
intron-3CDS	ENST00000566885	ENST00000397412		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
intron-3CDS	ENST00000566885	ENST00000436138		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
intron-3CDS	ENST00000566885	ENST00000293925		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
intron-intron	ENST00000566885	ENST00000262317		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5UTR-3CDS	ENST00000563542	ENST00000397412		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5UTR-3CDS	ENST00000563542	ENST00000436138		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5UTR-3CDS	ENST00000563542	ENST00000293925		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
5UTR-intron	ENST00000563542	ENST00000262317		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	MYO9A	chr15	72338065	-	CRAMP1L	chr16	1682213	+
In-frame	ENST00000356462	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000356462	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000356462	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000356462	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000400345	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000400345	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000400345	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000400345	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000589054	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000589054	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000589054	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000589054	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5UTR-3CDS	ENST00000256832	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5UTR-3CDS	ENST00000256832	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5UTR-intron	ENST00000256832	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5UTR-intron	ENST00000256832	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000382850	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000382850	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000382850	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000382850	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000256830	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
In-frame	ENST00000256830	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000256830	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-intron	ENST00000256830	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000588516	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000588516	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000588516	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000588516	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000456986	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000456986	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000456986	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000456986	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000435432	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000435432	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000435432	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000435432	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000357895	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000357895	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000357895	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000357895	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000586263	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000586263	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000586263	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000586263	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000456173	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000456173	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000456173	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000456173	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000431212	ENST00000561311		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-3CDS	ENST00000431212	ENST00000306829		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000431212	ENST00000559908		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
intron-intron	ENST00000431212	ENST00000472902		TCGA	RV	BRCA	TCGA-A8-A06P-01A	NEDD4L	chr18	55711940	+	TLN2	chr15	63063163	+
5CDS-5UTR	ENST00000367385	ENST00000469606		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000367385	ENST00000366994		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000367385	ENST00000366993		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000367385	ENST00000366992		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000367385	ENST00000440600		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000538004	ENST00000469606		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000538004	ENST00000366994		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000538004	ENST00000366993		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000538004	ENST00000366992		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
5CDS-5UTR	ENST00000538004	ENST00000440600		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000367383	ENST00000469606		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000367383	ENST00000366994		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000367383	ENST00000366993		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000367383	ENST00000366992		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000367383	ENST00000440600		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000417895	ENST00000469606		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000417895	ENST00000366994		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000417895	ENST00000366993		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000417895	ENST00000366992		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-5UTR	ENST00000417895	ENST00000440600		TCGA	RV	BRCA	TCGA-OK-A5Q2-01A	NEK7	chr1	198233365	+	INTS7	chr1	212115453	-
intron-3CDS	ENST00000395487	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000395487	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000395487	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000395487	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000395487	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000395487	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000395487	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000395487	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000429094	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000429094	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000551601	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000551601	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000452445	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000452445	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000549027	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000549027	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000333837	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000333837	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000437801	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000437801	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000547172	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000547172	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000548446		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000420353		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000415113		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000456903		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000548118		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000591397		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-3CDS	ENST00000548826	ENST00000328463		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
intron-intron	ENST00000548826	ENST00000546661		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	NELL2	chr12	45315573	-	ATF7	chr12	53946421	-
In-frame	ENST00000347330	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000347330	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000347330	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000347330	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000413209	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000413209	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000413209	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000413209	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000338641	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000338641	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000338641	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000338641	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000403435	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000403435	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000403435	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000403435	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000361452	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361452	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361452	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361452	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000403999	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000403999	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000403999	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000403999	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000334961	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000334961	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000334961	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000334961	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000353887	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000353887	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000353887	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000353887	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000361166	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361166	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361166	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361166	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000397789	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000397789	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000397789	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000397789	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
In-frame	ENST00000361676	ENST00000216190		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361676	ENST00000478547		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361676	ENST00000541106		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5CDS-intron	ENST00000361676	ENST00000405442		TCGA	RV	BRCA	TCGA-V7-A7HQ-01A	NF2	chr22	30000101	+	EIF3D	chr22	36908649	-
5UTR-3CDS	ENST00000393249	ENST00000247833		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000393249	ENST00000378815		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393249	ENST00000325555		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393249	ENST00000483530		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393249	ENST00000550536		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393249	ENST00000362025		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393249	ENST00000551641		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393249	ENST00000553099		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-intron	ENST00000393249	ENST00000550847		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000261183	ENST00000247833		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000261183	ENST00000378815		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000261183	ENST00000325555		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000261183	ENST00000483530		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000261183	ENST00000550536		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000261183	ENST00000362025		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000261183	ENST00000551641		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000261183	ENST00000553099		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-intron	ENST00000261183	ENST00000550847		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000393250	ENST00000247833		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000393250	ENST00000378815		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393250	ENST00000325555		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393250	ENST00000483530		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393250	ENST00000550536		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393250	ENST00000362025		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393250	ENST00000551641		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000393250	ENST00000553099		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-intron	ENST00000393250	ENST00000550847		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000552178	ENST00000247833		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000552178	ENST00000378815		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000552178	ENST00000325555		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000552178	ENST00000483530		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000552178	ENST00000550536		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000552178	ENST00000362025		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000552178	ENST00000551641		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000552178	ENST00000553099		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
5UTR-intron	ENST00000552178	ENST00000550847		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	OSBPL8	chr12	76953177	-	RAB3IP	chr12	70178500	+
In-frame	ENST00000437198	ENST00000389467		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
In-frame	ENST00000437198	ENST00000446231		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000437198	ENST00000565224		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000437198	ENST00000567737		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
In-frame	ENST00000420015	ENST00000389467		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
In-frame	ENST00000420015	ENST00000446231		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000420015	ENST00000565224		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000420015	ENST00000567737		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
Frame-shit	ENST00000341484	ENST00000389467		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
Frame-shit	ENST00000341484	ENST00000446231		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000341484	ENST00000565224		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000341484	ENST00000567737		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
In-frame	ENST00000539279	ENST00000389467		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
In-frame	ENST00000539279	ENST00000446231		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000539279	ENST00000565224		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000539279	ENST00000567737		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
intron-3CDS	ENST00000566021	ENST00000389467		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
intron-3CDS	ENST00000566021	ENST00000446231		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
intron-intron	ENST00000566021	ENST00000565224		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
intron-intron	ENST00000566021	ENST00000567737		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	PARN	chr16	14645878	-	SMG1	chr16	18849788	-
5CDS-intron	ENST00000420696	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000420696	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000420696	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000420696	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000401534	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000401534	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000401534	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000559240	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000559240	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000559240	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000367897	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000367897	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000367897	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000540236	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000540236	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000540236	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000560641	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000560641	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000560641	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000474046	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000474046	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000474046	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000485769	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000485769	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000485769	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000602281		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000539444		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000602873		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000366633		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000366636		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000535983		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000537876		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000540246	ENST00000366637		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000540246	ENST00000439617		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000540246	ENST00000427560		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000317586		TCGA	RV	BRCA	TCGA-A7-A13D-01B	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3CDS	ENST00000450793	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000450793	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000450793	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000450793	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000450793	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000450793	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000538141	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000538141	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000538141	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000538141	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000538141	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000538141	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000380180	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000380180	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000380180	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000380180	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000380180	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000380180	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000318007	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000318007	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000318007	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000318007	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000318007	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000318007	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
In-frame	ENST00000437932	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000437932	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000437932	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000437932	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000437932	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000437932	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
In-frame	ENST00000317968	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000317968	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000317968	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000317968	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000317968	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000317968	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
In-frame	ENST00000542407	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000542407	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000542407	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000542407	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000542407	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000542407	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000508216	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000508216	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000508216	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000508216	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000508216	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000508216	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
In-frame	ENST00000514743	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000514743	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000514743	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000514743	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000514743	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000514743	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
3UTR-3CDS	ENST00000380176	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
3UTR-5UTR	ENST00000380176	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
3UTR-intron	ENST00000380176	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
3UTR-intron	ENST00000380176	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
3UTR-5UTR	ENST00000380176	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
3UTR-5UTR	ENST00000380176	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000359265	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000359265	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000359265	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000359265	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000359265	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000359265	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000512274	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000512274	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000512274	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000512274	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000512274	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000512274	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000504489	ENST00000296444		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000504489	ENST00000444115		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000504489	ENST00000426002		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-intron	ENST00000504489	ENST00000465449		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000504489	ENST00000442747		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000504489	ENST00000443308		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	PDLIM5	chr4	95539342	+	SHISA5	chr3	48538726	-
Frame-shit	ENST00000242783	ENST00000558518		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000242783	ENST00000557933		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000242783	ENST00000455727		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000242783	ENST00000535915		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000242783	ENST00000545707		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000242783	ENST00000558013		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
5CDS-intron	ENST00000242783	ENST00000560628		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-3CDS	ENST00000587429	ENST00000558518		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-3CDS	ENST00000587429	ENST00000557933		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-3CDS	ENST00000587429	ENST00000455727		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-3CDS	ENST00000587429	ENST00000535915		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-3CDS	ENST00000587429	ENST00000545707		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-3CDS	ENST00000587429	ENST00000558013		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
intron-intron	ENST00000587429	ENST00000560628		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000342216	ENST00000558518		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000342216	ENST00000557933		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000342216	ENST00000455727		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000342216	ENST00000535915		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000342216	ENST00000545707		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
Frame-shit	ENST00000342216	ENST00000558013		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
5CDS-intron	ENST00000342216	ENST00000560628		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11226770	+
In-frame	ENST00000450993	ENST00000248444		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
In-frame	ENST00000450993	ENST00000392114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
5CDS-intron	ENST00000450993	ENST00000440053		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
In-frame	ENST00000417849	ENST00000248444		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
In-frame	ENST00000417849	ENST00000392114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
5CDS-intron	ENST00000417849	ENST00000440053		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
In-frame	ENST00000432688	ENST00000248444		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
In-frame	ENST00000432688	ENST00000392114		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
5CDS-intron	ENST00000432688	ENST00000440053		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PLCD4	chr2	219487601	+	VIL1	chr2	219313946	+
5UTR-3CDS	ENST00000545334	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
5UTR-3CDS	ENST00000537927	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
5UTR-3CDS	ENST00000318304	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
5UTR-3CDS	ENST00000535047	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
5UTR-3CDS	ENST00000542629	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
5UTR-3CDS	ENST00000228425	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
3UTR-3CDS	ENST00000541633	ENST00000302451		TCGA	RV	BRCA	TCGA-E2-A15A-06A	PPFIBP1	chr12	27731172	+	PDILT	chr16	20381011	-
Frame-shit	ENST00000261475	ENST00000216797		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
Frame-shit	ENST00000261475	ENST00000557140		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
Frame-shit	ENST00000261475	ENST00000557389		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
5CDS-intron	ENST00000261475	ENST00000557100		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
intron-3CDS	ENST00000555644	ENST00000216797		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
intron-3CDS	ENST00000555644	ENST00000557140		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
intron-3CDS	ENST00000555644	ENST00000557389		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
intron-intron	ENST00000555644	ENST00000557100		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPP2R3C	chr14	35557157	-	NFKBIA	chr14	35871266	-
5CDS-intron	ENST00000371941	ENST00000280653		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000371941	ENST00000471841		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000371941	ENST00000263969		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000396220	ENST00000280653		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000396220	ENST00000471841		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000396220	ENST00000263969		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
intron-intron	ENST00000496915	ENST00000280653		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
intron-intron	ENST00000496915	ENST00000471841		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
intron-intron	ENST00000496915	ENST00000263969		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PREX1	chr20	47240793	-	MFN1	chr3	179096011	+
Frame-shit	ENST00000601806	ENST00000221476		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PRKD2	chr19	47207426	-	CKM	chr19	45815178	-
In-frame	ENST00000291281	ENST00000221476		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PRKD2	chr19	47207426	-	CKM	chr19	45815178	-
In-frame	ENST00000433867	ENST00000221476		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PRKD2	chr19	47207426	-	CKM	chr19	45815178	-
Frame-shit	ENST00000600194	ENST00000221476		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PRKD2	chr19	47207426	-	CKM	chr19	45815178	-
Frame-shit	ENST00000595515	ENST00000221476		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PRKD2	chr19	47207426	-	CKM	chr19	45815178	-
intron-3CDS	ENST00000593492	ENST00000221476		TCGA	RV	BRCA	TCGA-BH-A0HX-01A	PRKD2	chr19	47207426	-	CKM	chr19	45815178	-
5CDS-intron	ENST00000230419	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000230419	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000230419	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000349241	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000349241	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000349241	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000345201	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000345201	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000345201	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000352931	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000352931	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000352931	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000481273	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000481273	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5CDS-intron	ENST00000481273	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
intron-intron	ENST00000476760	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
intron-intron	ENST00000476760	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
intron-intron	ENST00000476760	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
intron-intron	ENST00000471863	ENST00000446507		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
intron-intron	ENST00000471863	ENST00000441198		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
intron-intron	ENST00000471863	ENST00000304672		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890883	+
5UTR-3CDS	ENST00000378823	ENST00000451292		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-3CDS	ENST00000378823	ENST00000377797		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-3CDS	ENST00000378823	ENST00000445265		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-3CDS	ENST00000378823	ENST00000323668		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-3CDS	ENST00000378823	ENST00000439160		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-intron	ENST00000378823	ENST00000394269		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-intron	ENST00000378823	ENST00000504761		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-intron	ENST00000378823	ENST00000513346		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-intron	ENST00000378823	ENST00000506063		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
In-frame	ENST00000265335	ENST00000451292		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
In-frame	ENST00000265335	ENST00000377797		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
In-frame	ENST00000265335	ENST00000445265		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
In-frame	ENST00000265335	ENST00000323668		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
In-frame	ENST00000265335	ENST00000439160		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5CDS-intron	ENST00000265335	ENST00000394269		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5CDS-intron	ENST00000265335	ENST00000504761		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5CDS-intron	ENST00000265335	ENST00000513346		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5CDS-intron	ENST00000265335	ENST00000506063		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-3CDS	ENST00000487596	ENST00000451292		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-3CDS	ENST00000487596	ENST00000377797		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-3CDS	ENST00000487596	ENST00000445265		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-3CDS	ENST00000487596	ENST00000323668		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-3CDS	ENST00000487596	ENST00000439160		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-intron	ENST00000487596	ENST00000394269		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-intron	ENST00000487596	ENST00000504761		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-intron	ENST00000487596	ENST00000513346		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
intron-intron	ENST00000487596	ENST00000506063		TCGA	RV	BRCA	TCGA-A2-A0EP-01A	RAD50	chr5	131895059	+	TCOF1	chr5	149767465	+
5UTR-3CDS	ENST00000337910	ENST00000272238		TCGA	RV	BRCA	TCGA-C8-A134-01A	RHOBTB1	chr10	62701562	-	ATP6V1C2	chr2	10908845	+
5UTR-3CDS	ENST00000337910	ENST00000381661		TCGA	RV	BRCA	TCGA-C8-A134-01A	RHOBTB1	chr10	62701562	-	ATP6V1C2	chr2	10908845	+
5UTR-3CDS	ENST00000357917	ENST00000272238		TCGA	RV	BRCA	TCGA-C8-A134-01A	RHOBTB1	chr10	62701562	-	ATP6V1C2	chr2	10908845	+
5UTR-3CDS	ENST00000357917	ENST00000381661		TCGA	RV	BRCA	TCGA-C8-A134-01A	RHOBTB1	chr10	62701562	-	ATP6V1C2	chr2	10908845	+
intron-3CDS	ENST00000490827	ENST00000272238		TCGA	RV	BRCA	TCGA-C8-A134-01A	RHOBTB1	chr10	62701562	-	ATP6V1C2	chr2	10908845	+
intron-3CDS	ENST00000490827	ENST00000381661		TCGA	RV	BRCA	TCGA-C8-A134-01A	RHOBTB1	chr10	62701562	-	ATP6V1C2	chr2	10908845	+
Frame-shit	ENST00000508628	ENST00000573882		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000508628	ENST00000344227		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000508628	ENST00000570421		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-5UTR	ENST00000508628	ENST00000392434		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-3UTR	ENST00000508628	ENST00000573754		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000456466	ENST00000573882		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000456466	ENST00000344227		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000456466	ENST00000570421		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-5UTR	ENST00000456466	ENST00000392434		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-3UTR	ENST00000456466	ENST00000573754		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000582970	ENST00000573882		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000582970	ENST00000344227		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000582970	ENST00000570421		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-5UTR	ENST00000582970	ENST00000392434		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-3UTR	ENST00000582970	ENST00000573754		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000319921	ENST00000573882		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000319921	ENST00000344227		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
Frame-shit	ENST00000319921	ENST00000570421		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-5UTR	ENST00000319921	ENST00000392434		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
5CDS-3UTR	ENST00000319921	ENST00000573754		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3CDS	ENST00000336301	ENST00000573882		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3CDS	ENST00000336301	ENST00000344227		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3CDS	ENST00000336301	ENST00000570421		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-5UTR	ENST00000336301	ENST00000392434		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3UTR	ENST00000336301	ENST00000573754		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3CDS	ENST00000427003	ENST00000573882		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3CDS	ENST00000427003	ENST00000344227		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3CDS	ENST00000427003	ENST00000570421		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-5UTR	ENST00000427003	ENST00000392434		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
intron-3UTR	ENST00000427003	ENST00000573754		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	RNF213	chr17	78269613	+	CARD14	chr17	78162176	+
In-frame	ENST00000525364	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
In-frame	ENST00000270176	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
In-frame	ENST00000420247	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
In-frame	ENST00000533862	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
In-frame	ENST00000279270	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
In-frame	ENST00000524944	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
In-frame	ENST00000527009	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
intron-3CDS	ENST00000534462	ENST00000317568		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000531296		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000355991		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000416776		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	SCYL1	chr11	65294588	+	FRMD8	chr11	65172335	+
5CDS-5UTR	ENST00000247020	ENST00000537330		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000247020	ENST00000570891		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000247020	ENST00000306801		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000247020	ENST00000544334		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000247020	ENST00000575542		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000592250	ENST00000537330		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000592250	ENST00000570891		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000592250	ENST00000306801		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000592250	ENST00000544334		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
intron-intron	ENST00000592250	ENST00000575542		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SDF2	chr17	26988744	-	RPTOR	chr17	78599491	+
Frame-shit	ENST00000370345	ENST00000327946		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
Frame-shit	ENST00000370345	ENST00000536331		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
5CDS-intron	ENST00000370345	ENST00000552278		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-3CDS	ENST00000494350	ENST00000327946		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-3CDS	ENST00000494350	ENST00000536331		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-intron	ENST00000494350	ENST00000552278		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
Frame-shit	ENST00000451524	ENST00000327946		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
Frame-shit	ENST00000451524	ENST00000536331		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
5CDS-intron	ENST00000451524	ENST00000552278		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-3CDS	ENST00000535773	ENST00000327946		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-3CDS	ENST00000535773	ENST00000536331		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-intron	ENST00000535773	ENST00000552278		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-3CDS	ENST00000370329	ENST00000327946		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-3CDS	ENST00000370329	ENST00000536331		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
intron-intron	ENST00000370329	ENST00000552278		TCGA	RV	BRCA	TCGA-S3-AA11-01A	SEC31B	chr10	102265118	-	GRID1	chr10	87407154	-
Frame-shit	ENST00000264451	ENST00000264784		TCGA	RV	BRCA	TCGA-A8-A09M-01A	SLC30A9	chr4	42003797	+	SLC2A9	chr4	9909969	-
Frame-shit	ENST00000264451	ENST00000506583		TCGA	RV	BRCA	TCGA-A8-A09M-01A	SLC30A9	chr4	42003797	+	SLC2A9	chr4	9909969	-
Frame-shit	ENST00000264451	ENST00000309065		TCGA	RV	BRCA	TCGA-A8-A09M-01A	SLC30A9	chr4	42003797	+	SLC2A9	chr4	9909969	-
5CDS-intron	ENST00000264451	ENST00000481042		TCGA	RV	BRCA	TCGA-A8-A09M-01A	SLC30A9	chr4	42003797	+	SLC2A9	chr4	9909969	-
In-frame	ENST00000255559	ENST00000580974		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000255559	ENST00000299954		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000255559	ENST00000335257		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000255559	ENST00000581322		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000542342	ENST00000580974		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000542342	ENST00000299954		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000542342	ENST00000335257		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000542342	ENST00000581322		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000579988	ENST00000580974		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000579988	ENST00000299954		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000579988	ENST00000335257		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000579988	ENST00000581322		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000579732	ENST00000580974		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000579732	ENST00000299954		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000579732	ENST00000335257		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000579732	ENST00000581322		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	SLC39A11	chr17	70845773	-	PITPNC1	chr17	65528918	+
Frame-shit	ENST00000544865	ENST00000336868		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000544865	ENST00000577098		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000544865	ENST00000575801		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000544865	ENST00000538650		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000544865	ENST00000537628		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
Frame-shit	ENST00000263073	ENST00000336868		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000263073	ENST00000577098		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000263073	ENST00000575801		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000263073	ENST00000538650		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000263073	ENST00000537628		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
Frame-shit	ENST00000354901	ENST00000336868		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000354901	ENST00000577098		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000354901	ENST00000575801		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000354901	ENST00000538650		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000354901	ENST00000537628		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
Frame-shit	ENST00000536871	ENST00000336868		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000536871	ENST00000577098		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000536871	ENST00000575801		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000536871	ENST00000538650		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-intron	ENST00000536871	ENST00000537628		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
intron-3CDS	ENST00000573166	ENST00000336868		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
intron-intron	ENST00000573166	ENST00000577098		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
intron-intron	ENST00000573166	ENST00000575801		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
intron-intron	ENST00000573166	ENST00000538650		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
intron-intron	ENST00000573166	ENST00000537628		TCGA	RV	BRCA	TCGA-A2-A04U-01A	SMG6	chr17	2075952	-	NXN	chr17	704371	-
5CDS-5UTR	ENST00000371263	ENST00000493331		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	SPO11	chr20	55910963	+	GSTA1	chr6	52657785	-
5CDS-5UTR	ENST00000371263	ENST00000334575		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	SPO11	chr20	55910963	+	GSTA1	chr6	52657785	-
5CDS-5UTR	ENST00000345868	ENST00000493331		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	SPO11	chr20	55910963	+	GSTA1	chr6	52657785	-
5CDS-5UTR	ENST00000345868	ENST00000334575		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	SPO11	chr20	55910963	+	GSTA1	chr6	52657785	-
5CDS-5UTR	ENST00000371260	ENST00000493331		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	SPO11	chr20	55910963	+	GSTA1	chr6	52657785	-
5CDS-5UTR	ENST00000371260	ENST00000334575		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	SPO11	chr20	55910963	+	GSTA1	chr6	52657785	-
5UTR-5UTR	ENST00000393328	ENST00000254066		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000393328	ENST00000394089		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000393328	ENST00000425707		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000393328	ENST00000394086		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000393328	ENST00000394081		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000393328	ENST00000420042		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000393331	ENST00000254066		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000393331	ENST00000394089		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000393331	ENST00000425707		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000393331	ENST00000394086		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000393331	ENST00000394081		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000393331	ENST00000420042		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000347630	ENST00000254066		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000347630	ENST00000394089		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000347630	ENST00000425707		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000347630	ENST00000394086		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000347630	ENST00000394081		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000347630	ENST00000420042		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000504102	ENST00000254066		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000504102	ENST00000394089		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000504102	ENST00000425707		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000504102	ENST00000394086		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000504102	ENST00000394081		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000504102	ENST00000420042		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000503676	ENST00000254066		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000503676	ENST00000394089		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000503676	ENST00000425707		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
intron-intron	ENST00000503676	ENST00000394086		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
intron-intron	ENST00000503676	ENST00000394081		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
intron-intron	ENST00000503676	ENST00000420042		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000513080	ENST00000254066		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000513080	ENST00000394089		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-5UTR	ENST00000513080	ENST00000425707		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000513080	ENST00000394086		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000513080	ENST00000394081		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
5UTR-intron	ENST00000513080	ENST00000420042		TCGA	RV	BRCA	TCGA-LD-A9QF-01A	SPOP	chr17	47755295	-	RARA	chr17	38487109	+
Frame-shit	ENST00000300737	ENST00000396825		TCGA	RV	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4104212	+	FITM2	chr20	42935880	-
Frame-shit	ENST00000527651	ENST00000396825		TCGA	RV	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4104212	+	FITM2	chr20	42935880	-
intron-3CDS	ENST00000527484	ENST00000396825		TCGA	RV	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4104212	+	FITM2	chr20	42935880	-
Frame-shit	ENST00000533977	ENST00000396825		TCGA	RV	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4104212	+	FITM2	chr20	42935880	-
5CDS-5UTR	ENST00000397517	ENST00000548446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000420353		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000415113		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000456903		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000548118		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000591397		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000328463		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000397517	ENST00000546661		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000548446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000420353		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000415113		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000456903		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000548118		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000591397		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000328463		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000539966	ENST00000546661		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000548446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000420353		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000415113		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000456903		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000548118		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000591397		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000328463		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-intron	ENST00000481288	ENST00000546661		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000548446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000420353		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000415113		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000456903		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000548118		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000591397		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000328463		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-intron	ENST00000376547	ENST00000546661		TCGA	RV	BRCA	TCGA-A7-A13D-01B	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
In-frame	ENST00000343846	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
In-frame	ENST00000343846	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
In-frame	ENST00000343846	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
In-frame	ENST00000343846	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
In-frame	ENST00000343846	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
In-frame	ENST00000343846	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5CDS-intron	ENST00000343846	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366878	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366878	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366878	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366878	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366878	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366878	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5CDS-intron	ENST00000366878	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000484758	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000484758	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000484758	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000484758	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000484758	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000484758	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5CDS-intron	ENST00000484758	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000494793	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000494793	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000494793	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000494793	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000494793	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000494793	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5CDS-intron	ENST00000494793	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000478605	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000478605	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000478605	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000478605	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000478605	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000478605	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-intron	ENST00000478605	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000454695	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000454695	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000454695	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000454695	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000454695	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-3CDS	ENST00000454695	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5UTR-intron	ENST00000454695	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000344029	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000344029	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000344029	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000344029	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000344029	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000344029	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5CDS-intron	ENST00000344029	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366877	ENST00000391875		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366877	ENST00000281701		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366877	ENST00000469075		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366877	ENST00000482491		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366877	ENST00000340871		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000366877	ENST00000361463		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
5CDS-intron	ENST00000366877	ENST00000468673		TCGA	RV	BRCA	TCGA-AO-A12D-01A	SUSD4	chr1	223536620	-	NVL	chr1	224468887	-
Frame-shit	ENST00000424789	ENST00000269576		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	TANC2	chr17	61345234	+	KRT10	chr17	38974734	-
Frame-shit	ENST00000389520	ENST00000269576		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	TANC2	chr17	61345234	+	KRT10	chr17	38974734	-
Frame-shit	ENST00000392872	ENST00000388887		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	TDG	chr12	104359838	+	STAB2	chr12	104155078	+
5UTR-3CDS	ENST00000266775	ENST00000388887		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	TDG	chr12	104359838	+	STAB2	chr12	104155078	+
5UTR-3CDS	ENST00000544861	ENST00000388887		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	TDG	chr12	104359838	+	STAB2	chr12	104155078	+
intron-3CDS	ENST00000542036	ENST00000388887		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	TDG	chr12	104359838	+	STAB2	chr12	104155078	+
intron-3CDS	ENST00000536395	ENST00000388887		TCGA	RV	BRCA	TCGA-AO-A1KQ-01A	TDG	chr12	104359838	+	STAB2	chr12	104155078	+
Frame-shit	ENST00000379613	ENST00000354489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000379613	ENST00000313243		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000379613	ENST00000474039		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-3UTR	ENST00000379613	ENST00000538030		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-intron	ENST00000379613	ENST00000536370		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
Frame-shit	ENST00000379604	ENST00000354489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000379604	ENST00000313243		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000379604	ENST00000474039		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-3UTR	ENST00000379604	ENST00000538030		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-intron	ENST00000379604	ENST00000536370		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
Frame-shit	ENST00000319516	ENST00000354489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000319516	ENST00000313243		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000319516	ENST00000474039		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-3UTR	ENST00000319516	ENST00000538030		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-intron	ENST00000319516	ENST00000536370		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
Frame-shit	ENST00000379608	ENST00000354489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000379608	ENST00000313243		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000379608	ENST00000474039		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-3UTR	ENST00000379608	ENST00000538030		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-intron	ENST00000379608	ENST00000536370		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
Frame-shit	ENST00000482890	ENST00000354489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000482890	ENST00000313243		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
In-frame	ENST00000482890	ENST00000474039		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-3UTR	ENST00000482890	ENST00000538030		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5CDS-intron	ENST00000482890	ENST00000536370		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5UTR-3CDS	ENST00000497266	ENST00000354489		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5UTR-3CDS	ENST00000497266	ENST00000313243		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5UTR-3CDS	ENST00000497266	ENST00000474039		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5UTR-3UTR	ENST00000497266	ENST00000538030		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
5UTR-intron	ENST00000497266	ENST00000536370		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	TFAP2A	chr6	10404741	-	MAK	chr6	10764839	-
intron-3CDS	ENST00000499676	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000499676	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
Frame-shit	ENST00000489671	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
5CDS-3UTR	ENST00000489671	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000486111	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000486111	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000477292	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000477292	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000495310	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000495310	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
5UTR-3CDS	ENST00000467072	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
5UTR-3UTR	ENST00000467072	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
5UTR-3CDS	ENST00000317104	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
5UTR-3UTR	ENST00000317104	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000310282	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000310282	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000479040	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000479040	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000397991	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000397991	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3CDS	ENST00000464782	ENST00000254770		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
intron-3UTR	ENST00000464782	ENST00000486376		TCGA	RV	BRCA	TCGA-A2-A25F-01A	TFDP2	chr3	141811903	-	LANCL2	chr7	55466116	+
5UTR-3CDS	ENST00000354618	ENST00000316156		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-3CDS	ENST00000354618	ENST00000373150		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-3CDS	ENST00000354618	ENST00000373151		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-intron	ENST00000354618	ENST00000474796		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-intron	ENST00000354618	ENST00000373148		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-3CDS	ENST00000469141	ENST00000316156		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-3CDS	ENST00000469141	ENST00000373150		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-3CDS	ENST00000469141	ENST00000373151		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-intron	ENST00000469141	ENST00000474796		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5UTR-intron	ENST00000469141	ENST00000373148		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000466743	ENST00000316156		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000466743	ENST00000373150		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000466743	ENST00000373151		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
intron-intron	ENST00000466743	ENST00000474796		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
intron-intron	ENST00000466743	ENST00000373148		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	THRAP3	chr1	36690106	+	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000370282	ENST00000462405		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-intron	ENST00000370282	ENST00000370425		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-5UTR	ENST00000370282	ENST00000294696		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-5UTR	ENST00000370282	ENST00000370424		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
intron-intron	ENST00000483033	ENST00000462405		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
intron-intron	ENST00000483033	ENST00000370425		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
intron-5UTR	ENST00000483033	ENST00000294696		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
intron-5UTR	ENST00000483033	ENST00000370424		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-intron	ENST00000479918	ENST00000462405		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-intron	ENST00000479918	ENST00000370425		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-5UTR	ENST00000479918	ENST00000294696		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-5UTR	ENST00000479918	ENST00000370424		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-intron	ENST00000370280	ENST00000462405		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-intron	ENST00000370280	ENST00000370425		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-5UTR	ENST00000370280	ENST00000294696		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
5CDS-5UTR	ENST00000370280	ENST00000370424		TCGA	RV	BRCA	TCGA-A2-A1FX-01A	TMED5	chr1	93645611	-	HFM1	chr1	91818709	-
In-frame	ENST00000560371	ENST00000262241		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000560371	ENST00000570597		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000347662	ENST00000262241		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000347662	ENST00000570597		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000392745	ENST00000262241		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000392745	ENST00000570597		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000539721	ENST00000262241		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000539721	ENST00000570597		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000351691	ENST00000262241		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
In-frame	ENST00000351691	ENST00000570597		TCGA	RV	BRCA	TCGA-E9-A244-01A	TRAF3	chr14	103342862	+	RCOR1	chr14	103173688	+
intron-5UTR	ENST00000437508	ENST00000451320		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000429148		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000353617		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000405727		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000356064		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000437508	ENST00000511289		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
3UTR-5UTR	ENST00000494872	ENST00000451320		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
3UTR-5UTR	ENST00000494872	ENST00000429148		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
3UTR-5UTR	ENST00000494872	ENST00000353617		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
3UTR-5UTR	ENST00000494872	ENST00000405727		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
3UTR-5UTR	ENST00000494872	ENST00000356064		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
3UTR-intron	ENST00000494872	ENST00000511289		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-5UTR	ENST00000338700	ENST00000451320		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-5UTR	ENST00000338700	ENST00000429148		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-5UTR	ENST00000338700	ENST00000353617		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-5UTR	ENST00000338700	ENST00000405727		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-5UTR	ENST00000338700	ENST00000356064		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-intron	ENST00000338700	ENST00000511289		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153750777	+
5CDS-5UTR	ENST00000451813	ENST00000375114		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000451813	ENST00000246194		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000451813	ENST00000493399		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000252015	ENST00000375114		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000252015	ENST00000246194		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000252015	ENST00000493399		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000539834	ENST00000375114		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000539834	ENST00000246194		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000539834	ENST00000493399		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000432634	ENST00000375114		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000432634	ENST00000246194		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000432634	ENST00000493399		TCGA	RV	BRCA	TCGA-LL-A441-01A	TRPC4AP	chr20	33622926	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000360943	ENST00000513488		TCGA	RV	BRCA	TCGA-AN-A04C-01A	UBE2Z	chr17	46998634	+	ZNF652	chr17	47395345	-
5CDS-5UTR	ENST00000360943	ENST00000362063		TCGA	RV	BRCA	TCGA-AN-A04C-01A	UBE2Z	chr17	46998634	+	ZNF652	chr17	47395345	-
5CDS-5UTR	ENST00000360943	ENST00000430262		TCGA	RV	BRCA	TCGA-AN-A04C-01A	UBE2Z	chr17	46998634	+	ZNF652	chr17	47395345	-
5CDS-5UTR	ENST00000232165	ENST00000396402		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000232165	ENST00000260433		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000232165	ENST00000396404		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000232165	ENST00000559878		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000232165	ENST00000405913		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000232165	ENST00000557858		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000232165	ENST00000492852		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000438097	ENST00000396402		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000438097	ENST00000260433		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000438097	ENST00000396404		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000438097	ENST00000559878		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000438097	ENST00000405913		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000438097	ENST00000557858		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000438097	ENST00000492852		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000566215	ENST00000396402		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000566215	ENST00000260433		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000566215	ENST00000396404		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000566215	ENST00000559878		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000566215	ENST00000405913		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000566215	ENST00000557858		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000566215	ENST00000492852		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000428984	ENST00000396402		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000428984	ENST00000260433		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000428984	ENST00000396404		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000428984	ENST00000559878		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000428984	ENST00000405913		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000428984	ENST00000557858		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000428984	ENST00000492852		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000397954	ENST00000396402		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000397954	ENST00000260433		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000397954	ENST00000396404		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000397954	ENST00000559878		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000397954	ENST00000405913		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000397954	ENST00000557858		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000397954	ENST00000492852		TCGA	RV	BRCA	TCGA-A8-A07G-01A	UBE3A	chr15	25650608	-	CYP19A1	chr15	51535147	-
Frame-shit	ENST00000261497	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A092-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
5UTR-3UTR	ENST00000530267	ENST00000371497		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000530267	ENST00000603338		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000530267	ENST00000329613		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000530535	ENST00000371497		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000530535	ENST00000603338		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000530535	ENST00000329613		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000529308	ENST00000371497		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000529308	ENST00000603338		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000529308	ENST00000329613		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000441408	ENST00000371497		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000441408	ENST00000603338		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000441408	ENST00000329613		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000526425	ENST00000371497		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000526425	ENST00000603338		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000526425	ENST00000329613		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	USP35	chr11	77900203	+	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000465952	ENST00000314485		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	USPL1	chr13	31205611	+	IGSF8	chr1	160063961	-
Frame-shit	ENST00000465952	ENST00000368086		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	USPL1	chr13	31205611	+	IGSF8	chr1	160063961	-
5CDS-5UTR	ENST00000465952	ENST00000460351		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	USPL1	chr13	31205611	+	IGSF8	chr1	160063961	-
In-frame	ENST00000255304	ENST00000314485		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	USPL1	chr13	31205611	+	IGSF8	chr1	160063961	-
In-frame	ENST00000255304	ENST00000368086		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	USPL1	chr13	31205611	+	IGSF8	chr1	160063961	-
5CDS-5UTR	ENST00000255304	ENST00000460351		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	USPL1	chr13	31205611	+	IGSF8	chr1	160063961	-
5CDS-intron	ENST00000370056	ENST00000304685		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-5UTR	ENST00000370056	ENST00000536277		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000370056	ENST00000360851		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000370056	ENST00000539189		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000527011	ENST00000304685		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-5UTR	ENST00000527011	ENST00000536277		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000527011	ENST00000360851		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000527011	ENST00000539189		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-intron	ENST00000544443	ENST00000304685		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-5UTR	ENST00000544443	ENST00000536277		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-intron	ENST00000544443	ENST00000360851		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-intron	ENST00000544443	ENST00000539189		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-intron	ENST00000415432	ENST00000304685		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-5UTR	ENST00000415432	ENST00000536277		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-intron	ENST00000415432	ENST00000360851		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
intron-intron	ENST00000415432	ENST00000539189		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000343258	ENST00000304685		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5UTR-5UTR	ENST00000343258	ENST00000536277		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000343258	ENST00000360851		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000343258	ENST00000539189		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000371846	ENST00000304685		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-5UTR	ENST00000371846	ENST00000536277		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000371846	ENST00000360851		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000371846	ENST00000539189		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	VAV3	chr1	108291590	-	RGL1	chr1	183666538	+
In-frame	ENST00000265107	ENST00000504830		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
In-frame	ENST00000265107	ENST00000352040		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000265107	ENST00000504582		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000265107	ENST00000515401		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
In-frame	ENST00000504564	ENST00000504830		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
In-frame	ENST00000504564	ENST00000352040		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000504564	ENST00000504582		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000504564	ENST00000515401		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
3UTR-3CDS	ENST00000510699	ENST00000504830		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
3UTR-3CDS	ENST00000510699	ENST00000352040		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
3UTR-5UTR	ENST00000510699	ENST00000504582		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
3UTR-5UTR	ENST00000510699	ENST00000515401		TCGA	RV	BRCA	TCGA-A2-A0SY-01A	WDR70	chr5	37605340	+	ADAMTS12	chr5	33751653	-
3UTR-3CDS	ENST00000494757	ENST00000360295		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
3UTR-3CDS	ENST00000494757	ENST00000317338		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
3UTR-3CDS	ENST00000494757	ENST00000442608		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
3UTR-3CDS	ENST00000494757	ENST00000335960		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000323571	ENST00000360295		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000323571	ENST00000317338		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000323571	ENST00000442608		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000323571	ENST00000335960		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000585043	ENST00000360295		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000585043	ENST00000317338		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000585043	ENST00000442608		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000585043	ENST00000335960		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000394103	ENST00000360295		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000394103	ENST00000317338		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000394103	ENST00000442608		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000394103	ENST00000335960		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000536600	ENST00000360295		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000536600	ENST00000317338		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000536600	ENST00000442608		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
5UTR-3CDS	ENST00000536600	ENST00000335960		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000583130	ENST00000360295		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000583130	ENST00000317338		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000583130	ENST00000442608		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000583130	ENST00000335960		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	WIPF2	chr17	38375744	+	SEZ6	chr17	27309057	-
Frame-shit	ENST00000287218	ENST00000373479		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
Frame-shit	ENST00000287218	ENST00000469731		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
Frame-shit	ENST00000287218	ENST00000394443		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
5CDS-3UTR	ENST00000287218	ENST00000479516		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
Frame-shit	ENST00000373391	ENST00000373479		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
Frame-shit	ENST00000373391	ENST00000469731		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
Frame-shit	ENST00000373391	ENST00000394443		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
5CDS-3UTR	ENST00000373391	ENST00000479516		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
intron-3CDS	ENST00000463847	ENST00000373479		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
intron-3CDS	ENST00000463847	ENST00000469731		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
intron-3CDS	ENST00000463847	ENST00000394443		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
intron-3UTR	ENST00000463847	ENST00000479516		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ZFAND3	chr6	37787792	+	RNF8	chr6	37328222	+
intron-3CDS	ENST00000369066	ENST00000341911		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000316528		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000442647		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000367814		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000525369		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000534121		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000533624		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000534044		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000369066	ENST00000528774		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000369066	ENST00000531845		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000369066	ENST00000527615		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000369066	ENST00000420123		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000341911		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000316528		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000442647		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000367814		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000525369		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000534121		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000533624		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000534044		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000535438	ENST00000528774		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000535438	ENST00000531845		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000535438	ENST00000527615		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000535438	ENST00000420123		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000341911		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000316528		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000442647		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000367814		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000525369		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000534121		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000533624		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000534044		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3CDS	ENST00000487681	ENST00000528774		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000487681	ENST00000531845		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000487681	ENST00000527615		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
intron-3UTR	ENST00000487681	ENST00000420123		TCGA	RV	BRCA	TCGA-EW-A1P3-01A	AIM1	chr6	106808956	+	MYB	chr6	135513462	+
5UTR-3CDS	ENST00000337714	ENST00000318698		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
5UTR-3CDS	ENST00000337714	ENST00000566473		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
5UTR-intron	ENST00000337714	ENST00000574292		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
5UTR-3CDS	ENST00000314126	ENST00000318698		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
5UTR-3CDS	ENST00000314126	ENST00000566473		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
5UTR-intron	ENST00000314126	ENST00000574292		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000571629	ENST00000318698		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000571629	ENST00000566473		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-intron	ENST00000571629	ENST00000574292		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000572557	ENST00000318698		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000572557	ENST00000566473		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-intron	ENST00000572557	ENST00000574292		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000539273	ENST00000318698		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000539273	ENST00000566473		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
intron-intron	ENST00000539273	ENST00000574292		TCGA	RV	BRCA	TCGA-A8-A07I-01A	AKAP1	chr17	55162759	+	ANKFN1	chr17	54428127	+
In-frame	ENST00000451320	ENST00000302068		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-intron	ENST00000451320	ENST00000509493		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-3UTR	ENST00000451320	ENST00000502545		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
In-frame	ENST00000429148	ENST00000302068		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-intron	ENST00000429148	ENST00000509493		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-3UTR	ENST00000429148	ENST00000502545		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
In-frame	ENST00000353617	ENST00000302068		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-intron	ENST00000353617	ENST00000509493		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-3UTR	ENST00000353617	ENST00000502545		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
In-frame	ENST00000405727	ENST00000302068		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-intron	ENST00000405727	ENST00000509493		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-3UTR	ENST00000405727	ENST00000502545		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
In-frame	ENST00000356064	ENST00000302068		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-intron	ENST00000356064	ENST00000509493		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
5CDS-3UTR	ENST00000356064	ENST00000502545		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
intron-3CDS	ENST00000511289	ENST00000302068		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
intron-intron	ENST00000511289	ENST00000509493		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
intron-3UTR	ENST00000511289	ENST00000502545		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	ARFIP1	chr4	153750878	+	FGB	chr4	155486960	+
In-frame	ENST00000524892	ENST00000325455		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
In-frame	ENST00000524892	ENST00000534013		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
5CDS-intron	ENST00000524892	ENST00000263463		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
In-frame	ENST00000298815	ENST00000325455		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
In-frame	ENST00000298815	ENST00000534013		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
5CDS-intron	ENST00000298815	ENST00000263463		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
intron-3CDS	ENST00000534060	ENST00000325455		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
intron-3CDS	ENST00000534060	ENST00000534013		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
intron-intron	ENST00000534060	ENST00000263463		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ARHGAP42	chr11	100558563	+	PGR	chr11	100933483	-
Frame-shit	ENST00000420843	ENST00000532317		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000420843	ENST00000526033		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000420843	ENST00000393346		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000420843	ENST00000528398		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000420843	ENST00000356360		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
5CDS-intron	ENST00000420843	ENST00000528411		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000393505	ENST00000532317		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000393505	ENST00000526033		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000393505	ENST00000393346		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000393505	ENST00000528398		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000393505	ENST00000356360		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
5CDS-intron	ENST00000393505	ENST00000528411		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000360025	ENST00000532317		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000360025	ENST00000526033		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000360025	ENST00000393346		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000360025	ENST00000528398		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000360025	ENST00000356360		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
5CDS-intron	ENST00000360025	ENST00000528411		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	ARRB1	chr11	75062632	-	PICALM	chr11	85726006	-
Frame-shit	ENST00000343823	ENST00000290974		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000343823	ENST00000511071		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000343823	ENST00000515312		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000343823	ENST00000515169		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000343823	ENST00000509171		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000343823	ENST00000503000		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000343823	ENST00000508471		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000343823	ENST00000505421		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000250635	ENST00000290974		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000250635	ENST00000511071		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000250635	ENST00000515312		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000250635	ENST00000515169		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000250635	ENST00000509171		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000250635	ENST00000503000		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000250635	ENST00000508471		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000250635	ENST00000505421		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000545394	ENST00000290974		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000545394	ENST00000511071		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545394	ENST00000515312		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545394	ENST00000515169		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545394	ENST00000509171		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545394	ENST00000503000		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000545394	ENST00000508471		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000545394	ENST00000505421		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000428278	ENST00000290974		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000428278	ENST00000511071		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000428278	ENST00000515312		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000428278	ENST00000515169		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000428278	ENST00000509171		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000428278	ENST00000503000		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000428278	ENST00000508471		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000428278	ENST00000505421		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000521652	ENST00000290974		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
Frame-shit	ENST00000521652	ENST00000511071		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000521652	ENST00000515312		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000521652	ENST00000515169		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000521652	ENST00000509171		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000521652	ENST00000503000		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000521652	ENST00000508471		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000521652	ENST00000505421		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-3CDS	ENST00000524263	ENST00000290974		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-3CDS	ENST00000524263	ENST00000511071		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-5UTR	ENST00000524263	ENST00000515312		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-5UTR	ENST00000524263	ENST00000515169		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-5UTR	ENST00000524263	ENST00000509171		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-5UTR	ENST00000524263	ENST00000503000		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-intron	ENST00000524263	ENST00000508471		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-intron	ENST00000524263	ENST00000505421		TCGA	RV	BRCA	TCGA-LL-A7T0-01A	ASH2L	chr8	37976881	+	ZFYVE28	chr4	2343342	-
intron-5UTR	ENST00000343245	ENST00000296978		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
intron-intron	ENST00000343245	ENST00000545622		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
intron-intron	ENST00000343245	ENST00000392429		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-5UTR	ENST00000369070	ENST00000296978		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-intron	ENST00000369070	ENST00000545622		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-intron	ENST00000369070	ENST00000392429		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-5UTR	ENST00000369076	ENST00000296978		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-intron	ENST00000369076	ENST00000545622		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-intron	ENST00000369076	ENST00000392429		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-5UTR	ENST00000360666	ENST00000296978		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-intron	ENST00000360666	ENST00000545622		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5UTR-intron	ENST00000360666	ENST00000392429		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
intron-5UTR	ENST00000475645	ENST00000296978		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
intron-intron	ENST00000475645	ENST00000545622		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
intron-intron	ENST00000475645	ENST00000392429		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130706318	+
5CDS-5UTR	ENST00000333229	ENST00000380671		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000333229	ENST00000288350		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000333229	ENST00000358268		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-intron	ENST00000333229	ENST00000495240		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000333229	ENST00000485895		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000342449	ENST00000380671		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000342449	ENST00000288350		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000342449	ENST00000358268		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-intron	ENST00000342449	ENST00000495240		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000342449	ENST00000485895		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000380800	ENST00000380671		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000380800	ENST00000288350		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000380800	ENST00000358268		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-intron	ENST00000380800	ENST00000495240		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000380800	ENST00000485895		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000341322	ENST00000380671		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000341322	ENST00000288350		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000341322	ENST00000358268		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-intron	ENST00000341322	ENST00000495240		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000341322	ENST00000485895		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000470108	ENST00000380671		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000470108	ENST00000288350		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000470108	ENST00000358268		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-intron	ENST00000470108	ENST00000495240		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000470108	ENST00000485895		TCGA	RV	BRCA	TCGA-A8-A08P-01A	BRWD1	chr21	40585407	-	LCA5L	chr21	40801137	-
Frame-shit	ENST00000334126	ENST00000435803		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
Frame-shit	ENST00000334126	ENST00000544596		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
Frame-shit	ENST00000313663	ENST00000435803		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
Frame-shit	ENST00000313663	ENST00000544596		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
intron-3CDS	ENST00000542452	ENST00000435803		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
intron-3CDS	ENST00000542452	ENST00000544596		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
Frame-shit	ENST00000539061	ENST00000435803		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
Frame-shit	ENST00000539061	ENST00000544596		TCGA	RV	BRCA	TCGA-A8-A091-01A	C2CD3	chr11	73843889	-	ABCA13	chr7	48520633	+
In-frame	ENST00000371073	ENST00000374379		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	CACHD1	chr1	64936625	+	CLIC4	chr1	25124233	+
5CDS-3UTR	ENST00000371073	ENST00000497755		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	CACHD1	chr1	64936625	+	CLIC4	chr1	25124233	+
In-frame	ENST00000290039	ENST00000374379		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	CACHD1	chr1	64936625	+	CLIC4	chr1	25124233	+
5CDS-3UTR	ENST00000290039	ENST00000497755		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	CACHD1	chr1	64936625	+	CLIC4	chr1	25124233	+
intron-3CDS	ENST00000495994	ENST00000374379		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	CACHD1	chr1	64936625	+	CLIC4	chr1	25124233	+
intron-3UTR	ENST00000495994	ENST00000497755		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	CACHD1	chr1	64936625	+	CLIC4	chr1	25124233	+
5UTR-3CDS	ENST00000397809	ENST00000552864		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	CCDC41	chr12	94853333	-	LIN7A	chr12	81205462	-
5UTR-3CDS	ENST00000339839	ENST00000552864		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	CCDC41	chr12	94853333	-	LIN7A	chr12	81205462	-
5UTR-3CDS	ENST00000397807	ENST00000552864		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	CCDC41	chr12	94853333	-	LIN7A	chr12	81205462	-
5UTR-3CDS	ENST00000547575	ENST00000552864		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	CCDC41	chr12	94853333	-	LIN7A	chr12	81205462	-
intron-3CDS	ENST00000549352	ENST00000552864		TCGA	RV	BRCA	TCGA-A2-A0CZ-01A	CCDC41	chr12	94853333	-	LIN7A	chr12	81205462	-
In-frame	ENST00000430627	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CDK12	chr17	37628016	+	FAM20A	chr17	66551884	-
5CDS-5UTR	ENST00000430627	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CDK12	chr17	37628016	+	FAM20A	chr17	66551884	-
In-frame	ENST00000447079	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CDK12	chr17	37628016	+	FAM20A	chr17	66551884	-
5CDS-5UTR	ENST00000447079	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CDK12	chr17	37628016	+	FAM20A	chr17	66551884	-
intron-3CDS	ENST00000559545	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CDK12	chr17	37628016	+	FAM20A	chr17	66551884	-
intron-5UTR	ENST00000559545	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CDK12	chr17	37628016	+	FAM20A	chr17	66551884	-
Frame-shit	ENST00000274695	ENST00000379052		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000274695	ENST00000425446		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000274695	ENST00000318204		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000274695	ENST00000508508		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000378624	ENST00000379052		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000378624	ENST00000425446		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000378624	ENST00000318204		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000378624	ENST00000508508		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000378610	ENST00000379052		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000378610	ENST00000425446		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000378610	ENST00000318204		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000378610	ENST00000508508		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
intron-3CDS	ENST00000476517	ENST00000379052		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
intron-3CDS	ENST00000476517	ENST00000425446		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
intron-3CDS	ENST00000476517	ENST00000318204		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
intron-3UTR	ENST00000476517	ENST00000508508		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	CDKAL1	chr6	20955816	+	RBM24	chr6	17291987	+
Frame-shit	ENST00000423902	ENST00000541428		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
Frame-shit	ENST00000423902	ENST00000379454		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000523897		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000522919		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000356457		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000518068		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000517903		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000445642		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000517847		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000522835		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000517856		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000389204		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000522603		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000379449		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000423902	ENST00000517661		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
Frame-shit	ENST00000524602	ENST00000541428		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
Frame-shit	ENST00000524602	ENST00000379454		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000523897		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000522919		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000356457		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000518068		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000517903		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000445642		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000517847		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000522835		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000517856		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000389204		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000522603		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000379449		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000524602	ENST00000517661		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
Frame-shit	ENST00000525508	ENST00000541428		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
Frame-shit	ENST00000525508	ENST00000379454		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000523897		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000522919		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000356457		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000518068		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000517903		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000445642		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000517847		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000522835		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000517856		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000389204		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000522603		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000379449		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000525508	ENST00000517661		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-3CDS	ENST00000529472	ENST00000541428		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-3CDS	ENST00000529472	ENST00000379454		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000523897		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000522919		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000356457		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000518068		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000517903		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000445642		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000517847		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000522835		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000517856		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000389204		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000522603		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000379449		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
intron-intron	ENST00000529472	ENST00000517661		TCGA	RV	BRCA	TCGA-AR-A1AU-01A	CHD7	chr8	61655656	+	ASPH	chr8	62596747	-
5CDS-intron	ENST00000399132	ENST00000394650		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	COL25A1	chr4	109762851	-	CCDC109B	chr4	110569640	+
5CDS-intron	ENST00000399132	ENST00000515114		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	COL25A1	chr4	109762851	-	CCDC109B	chr4	110569640	+
5CDS-intron	ENST00000399127	ENST00000394650		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	COL25A1	chr4	109762851	-	CCDC109B	chr4	110569640	+
5CDS-intron	ENST00000399127	ENST00000515114		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	COL25A1	chr4	109762851	-	CCDC109B	chr4	110569640	+
5CDS-intron	ENST00000399126	ENST00000394650		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	COL25A1	chr4	109762851	-	CCDC109B	chr4	110569640	+
5CDS-intron	ENST00000399126	ENST00000515114		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	COL25A1	chr4	109762851	-	CCDC109B	chr4	110569640	+
Frame-shit	ENST00000279804	ENST00000380317		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CTF1	chr16	30910854	+	BCL7C	chr16	30900266	-
5CDS-intron	ENST00000279804	ENST00000576194		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CTF1	chr16	30910854	+	BCL7C	chr16	30900266	-
5CDS-intron	ENST00000279804	ENST00000215115		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CTF1	chr16	30910854	+	BCL7C	chr16	30900266	-
Frame-shit	ENST00000395019	ENST00000380317		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CTF1	chr16	30910854	+	BCL7C	chr16	30900266	-
5CDS-intron	ENST00000395019	ENST00000576194		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CTF1	chr16	30910854	+	BCL7C	chr16	30900266	-
5CDS-intron	ENST00000395019	ENST00000215115		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CTF1	chr16	30910854	+	BCL7C	chr16	30900266	-
3UTR-intron	ENST00000346329	ENST00000309364		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000359180		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000317589		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000355397		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000429027		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000539256		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000299275		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000538714		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000543806		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000424268		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000540972		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000346329	ENST00000510738		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000309364		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000359180		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000317589		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000355397		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000429027		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000539256		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000299275		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000538714		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000543806		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000424268		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000540972		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000301843	ENST00000510738		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000309364		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000359180		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000317589		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000355397		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000429027		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000539256		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000299275		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000538714		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000543806		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000424268		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000540972		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000527622	ENST00000510738		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000309364		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000359180		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000317589		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000355397		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000429027		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000539256		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000299275		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000538714		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000543806		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000424268		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000540972		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000376561	ENST00000510738		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000309364		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000359180		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000317589		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000355397		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000429027		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000539256		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000299275		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000538714		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000543806		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000424268		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000540972		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000538675	ENST00000510738		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	CTTN	chr11	70282681	+	PLEKHA5	chr12	19441012	+
Frame-shit	ENST00000313077	ENST00000283645		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
Frame-shit	ENST00000313077	ENST00000453949		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
5CDS-3UTR	ENST00000313077	ENST00000559846		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
Frame-shit	ENST00000560848	ENST00000283645		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
Frame-shit	ENST00000560848	ENST00000453949		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
5CDS-3UTR	ENST00000560848	ENST00000559846		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
intron-3CDS	ENST00000435939	ENST00000283645		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
intron-3CDS	ENST00000435939	ENST00000453949		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
intron-3UTR	ENST00000435939	ENST00000559846		TCGA	RV	BRCA	TCGA-E2-A158-01A	CYFIP1	chr15	22926065	+	TUBGCP5	chr15	22861737	+
Frame-shit	ENST00000262809	ENST00000341500		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ELL	chr19	18632731	-	INSR	chr19	7267907	-
Frame-shit	ENST00000262809	ENST00000302850		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ELL	chr19	18632731	-	INSR	chr19	7267907	-
intron-3CDS	ENST00000596124	ENST00000341500		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ELL	chr19	18632731	-	INSR	chr19	7267907	-
intron-3CDS	ENST00000596124	ENST00000302850		TCGA	RV	BRCA	TCGA-AC-A7VB-01A	ELL	chr19	18632731	-	INSR	chr19	7267907	-
5CDS-5UTR	ENST00000557943	ENST00000395105		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000423167		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000323940		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000449139		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000416286		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000574439		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000535552		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000563965		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000574278		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000557943	ENST00000432245		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000395105		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000423167		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000323940		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000449139		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000416286		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000574439		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000535552		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000563965		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000574278		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000433983	ENST00000432245		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000395105		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000423167		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000323940		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000449139		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000416286		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000574439		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000535552		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000563965		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000574278		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000560726	ENST00000432245		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000395105		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000423167		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000323940		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000449139		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000416286		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000574439		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000535552		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000563965		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000574278		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5CDS-5UTR	ENST00000559602	ENST00000432245		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000395105		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000423167		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000323940		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000449139		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000416286		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000574439		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000535552		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000563965		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000574278		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
5UTR-5UTR	ENST00000560816	ENST00000432245		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ETFA	chr15	76566753	-	STRA6	chr15	74494623	-
In-frame	ENST00000396153	ENST00000310961		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
In-frame	ENST00000396153	ENST00000370958		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
In-frame	ENST00000396153	ENST00000035383		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
5CDS-5UTR	ENST00000396153	ENST00000415775		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
5CDS-intron	ENST00000396153	ENST00000565615		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
Frame-shit	ENST00000371778	ENST00000310961		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
Frame-shit	ENST00000371778	ENST00000370958		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
Frame-shit	ENST00000371778	ENST00000035383		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
5CDS-5UTR	ENST00000371778	ENST00000415775		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
5CDS-intron	ENST00000371778	ENST00000565615		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-3CDS	ENST00000545823	ENST00000310961		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-3CDS	ENST00000545823	ENST00000370958		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-3CDS	ENST00000545823	ENST00000035383		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-5UTR	ENST00000545823	ENST00000415775		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-intron	ENST00000545823	ENST00000565615		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-3CDS	ENST00000472808	ENST00000310961		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-3CDS	ENST00000472808	ENST00000370958		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-3CDS	ENST00000472808	ENST00000035383		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-5UTR	ENST00000472808	ENST00000415775		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
intron-intron	ENST00000472808	ENST00000565615		TCGA	RV	BRCA	TCGA-BH-A209-01A	FAF1	chr1	51323601	-	LRRC7	chr1	70257726	+
Frame-shit	ENST00000583610	ENST00000256646		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000583610	ENST00000602566		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000583610	ENST00000493703		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
Frame-shit	ENST00000394294	ENST00000256646		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000394294	ENST00000602566		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000394294	ENST00000493703		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
Frame-shit	ENST00000264658	ENST00000256646		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000264658	ENST00000602566		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000264658	ENST00000493703		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000577399	ENST00000256646		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000577399	ENST00000602566		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000577399	ENST00000493703		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	NOTCH2	chr1	120465401	-
Frame-shit	ENST00000331272	ENST00000439817		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
Frame-shit	ENST00000331272	ENST00000361464		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
5CDS-intron	ENST00000331272	ENST00000482611		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
5CDS-intron	ENST00000331272	ENST00000357797		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
5CDS-intron	ENST00000331272	ENST00000370094		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
5CDS-intron	ENST00000331272	ENST00000419011		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
intron-3CDS	ENST00000470093	ENST00000439817		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
intron-3CDS	ENST00000470093	ENST00000361464		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
intron-intron	ENST00000470093	ENST00000482611		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
intron-intron	ENST00000470093	ENST00000357797		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
intron-intron	ENST00000470093	ENST00000370094		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
intron-intron	ENST00000470093	ENST00000419011		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	FBXW4	chr10	103427643	-	MGEA5	chr10	103553755	-
In-frame	ENST00000251808	ENST00000374951		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	GRHL2	chr8	102571040	+	PAGE3	chrX	55289792	-
In-frame	ENST00000251808	ENST00000519203		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	GRHL2	chr8	102571040	+	PAGE3	chrX	55289792	-
In-frame	ENST00000395927	ENST00000374951		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	GRHL2	chr8	102571040	+	PAGE3	chrX	55289792	-
In-frame	ENST00000395927	ENST00000519203		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	GRHL2	chr8	102571040	+	PAGE3	chrX	55289792	-
intron-3CDS	ENST00000517674	ENST00000374951		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	GRHL2	chr8	102571040	+	PAGE3	chrX	55289792	-
intron-3CDS	ENST00000517674	ENST00000519203		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	GRHL2	chr8	102571040	+	PAGE3	chrX	55289792	-
Frame-shit	ENST00000379388	ENST00000421834		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
Frame-shit	ENST00000379388	ENST00000370769		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-3UTR	ENST00000379388	ENST00000312431		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-3UTR	ENST00000379388	ENST00000370754		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-3UTR	ENST00000379388	ENST00000370788		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-3UTR	ENST00000379388	ENST00000361203		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-3UTR	ENST00000379388	ENST00000244364		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-3UTR	ENST00000379388	ENST00000446842		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-intron	ENST00000379388	ENST00000340834		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-intron	ENST00000379388	ENST00000370765		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5CDS-intron	ENST00000379388	ENST00000518935		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3CDS	ENST00000484210	ENST00000421834		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3CDS	ENST00000484210	ENST00000370769		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000484210	ENST00000312431		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000484210	ENST00000370754		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000484210	ENST00000370788		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000484210	ENST00000361203		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000484210	ENST00000244364		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000484210	ENST00000446842		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-intron	ENST00000484210	ENST00000340834		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-intron	ENST00000484210	ENST00000370765		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-intron	ENST00000484210	ENST00000518935		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3CDS	ENST00000541134	ENST00000421834		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3CDS	ENST00000541134	ENST00000370769		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000541134	ENST00000312431		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000541134	ENST00000370754		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000541134	ENST00000370788		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000541134	ENST00000361203		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000541134	ENST00000244364		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-3UTR	ENST00000541134	ENST00000446842		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-intron	ENST00000541134	ENST00000340834		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-intron	ENST00000541134	ENST00000370765		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
intron-intron	ENST00000541134	ENST00000518935		TCGA	RV	BRCA	TCGA-LL-A740-01A	HIVEP1	chr6	12136125	+	DST	chr6	56325052	-
5UTR-3CDS	ENST00000372583	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000372583	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000372583	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000372583	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000372583	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000372583	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3UTR	ENST00000372583	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3CDS	ENST00000372584	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3CDS	ENST00000372584	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3CDS	ENST00000372584	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-intron	ENST00000372584	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-intron	ENST00000372584	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-intron	ENST00000372584	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3UTR	ENST00000372584	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000247584	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000247584	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000247584	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000247584	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000247584	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000247584	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3UTR	ENST00000247584	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000429157	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000429157	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3CDS	ENST00000429157	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000429157	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000429157	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-intron	ENST00000429157	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5UTR-3UTR	ENST00000429157	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3CDS	ENST00000460604	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3CDS	ENST00000460604	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3CDS	ENST00000460604	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-intron	ENST00000460604	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-intron	ENST00000460604	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-intron	ENST00000460604	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
intron-3UTR	ENST00000460604	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	HIVEP3	chr1	42166587	-	CREB3L4	chr1	153945671	+
5CDS-intron	ENST00000412585	ENST00000261531		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000412585	ENST00000554775		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000412585	ENST00000555761		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000425848	ENST00000261531		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000425848	ENST00000554775		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000425848	ENST00000555761		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000450871	ENST00000261531		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000450871	ENST00000554775		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000450871	ENST00000555761		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000359635	ENST00000261531		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000359635	ENST00000554775		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000359635	ENST00000555761		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000435618	ENST00000261531		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000435618	ENST00000554775		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000435618	ENST00000555761		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000421349	ENST00000261531		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000421349	ENST00000554775		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-intron	ENST00000421349	ENST00000555761		TCGA	RV	BRCA	TCGA-BH-A1FE-06A	HLA-B	chr6	31321649	-	SNW1	chr14	78189203	-
intron-3CDS	ENST00000393042	ENST00000547776		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000329257		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000547010		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000341752		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000549558		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000550693		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000549025		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000549493		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000547446		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000333732		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000546568		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000332712		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000546960		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000393042	ENST00000550833		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-3CDS	ENST00000420861	ENST00000547776		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000329257		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000547010		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000341752		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000549558		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000550693		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000549025		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000549493		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000547446		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000333732		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000546568		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000332712		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000546960		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
intron-intron	ENST00000420861	ENST00000550833		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
In-frame	ENST00000342502	ENST00000547776		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000329257		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000547010		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000341752		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000549558		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000550693		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000549025		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000549493		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000547446		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000333732		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000546568		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000332712		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000546960		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000342502	ENST00000550833		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
In-frame	ENST00000299157	ENST00000547776		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000329257		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000547010		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000341752		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000549558		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000550693		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000549025		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000549493		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000547446		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000333732		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000546568		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000332712		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000546960		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
5CDS-intron	ENST00000299157	ENST00000550833		TCGA	RV	BRCA	TCGA-E2-A159-01A	IKBIP	chr12	99028074	-	ANKS1B	chr12	99175915	-
In-frame	ENST00000534064	ENST00000253925		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
In-frame	ENST00000534064	ENST00000389547		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
5CDS-3UTR	ENST00000534064	ENST00000530548		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000535943	ENST00000253925		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000535943	ENST00000389547		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3UTR	ENST00000535943	ENST00000530548		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000525931	ENST00000253925		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000525931	ENST00000389547		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3UTR	ENST00000525931	ENST00000530548		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
In-frame	ENST00000529807	ENST00000253925		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
In-frame	ENST00000529807	ENST00000389547		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
5CDS-3UTR	ENST00000529807	ENST00000530548		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000527522	ENST00000253925		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000527522	ENST00000389547		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
intron-3UTR	ENST00000527522	ENST00000530548		TCGA	RV	BRCA	TCGA-A8-A086-01A	INTS4	chr11	77690042	-	PPFIA1	chr11	70218321	+
In-frame	ENST00000579662	ENST00000580123		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000579662	ENST00000585293		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000579662	ENST00000329783		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000579662	ENST00000450736		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000579662	ENST00000538213		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
In-frame	ENST00000339591	ENST00000580123		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000339591	ENST00000585293		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000339591	ENST00000329783		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000339591	ENST00000450736		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000339591	ENST00000538213		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
In-frame	ENST00000200181	ENST00000580123		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000200181	ENST00000585293		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000200181	ENST00000329783		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000200181	ENST00000450736		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000200181	ENST00000538213		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
In-frame	ENST00000450894	ENST00000580123		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000450894	ENST00000585293		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000450894	ENST00000329783		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000450894	ENST00000450736		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000450894	ENST00000538213		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
In-frame	ENST00000449880	ENST00000580123		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000449880	ENST00000585293		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000449880	ENST00000329783		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000449880	ENST00000450736		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000449880	ENST00000538213		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
intron-3CDS	ENST00000584558	ENST00000580123		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
intron-3UTR	ENST00000584558	ENST00000585293		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
intron-3UTR	ENST00000584558	ENST00000329783		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
intron-3UTR	ENST00000584558	ENST00000450736		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
intron-3UTR	ENST00000584558	ENST00000538213		TCGA	RV	BRCA	TCGA-C8-A26X-01A	ITGB4	chr17	73747192	+	SLC16A5	chr17	73094133	+
intron-3CDS	ENST00000341547	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000341547	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-3CDS	ENST00000357063	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000357063	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-3CDS	ENST00000377534	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000377534	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-3CDS	ENST00000321797	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000321797	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-3CDS	ENST00000526202	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000526202	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-3CDS	ENST00000465261	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000465261	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-3CDS	ENST00000605961	ENST00000377595		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
intron-intron	ENST00000605961	ENST00000606347		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	LMO7	chr13	76210862	+	UCHL3	chr13	76140831	+
In-frame	ENST00000253193	ENST00000292894		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	LRP3	chr19	33693892	+	THAP8	chr19	36531038	-
5CDS-intron	ENST00000253193	ENST00000538849		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	LRP3	chr19	33693892	+	THAP8	chr19	36531038	-
5CDS-5UTR	ENST00000253193	ENST00000524106		TCGA	RV	BRCA	TCGA-BH-A0GY-01A	LRP3	chr19	33693892	+	THAP8	chr19	36531038	-
5UTR-3CDS	ENST00000372600	ENST00000437809		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000372600	ENST00000368331		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000372600	ENST00000271883		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000372600	ENST00000361040		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-5UTR	ENST00000372600	ENST00000471341		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000372599	ENST00000437809		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000372599	ENST00000368331		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000372599	ENST00000271883		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000372599	ENST00000361040		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-5UTR	ENST00000372599	ENST00000471341		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000259324	ENST00000437809		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000259324	ENST00000368331		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000259324	ENST00000271883		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-3CDS	ENST00000259324	ENST00000361040		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
5UTR-5UTR	ENST00000259324	ENST00000471341		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000492784	ENST00000437809		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000492784	ENST00000368331		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000492784	ENST00000271883		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-3CDS	ENST00000492784	ENST00000361040		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-5UTR	ENST00000492784	ENST00000471341		TCGA	RV	BRCA	TCGA-E2-A158-01A	LRRC8A	chr9	131648400	+	GON4L	chr1	155774932	-
intron-5UTR	ENST00000541515	ENST00000409021		TCGA	RV	BRCA	TCGA-D8-A27R-01A	LUC7L2	chr7	139045068	+	JAKMIP1	chr4	6114724	-
intron-5UTR	ENST00000541515	ENST00000409371		TCGA	RV	BRCA	TCGA-D8-A27R-01A	LUC7L2	chr7	139045068	+	JAKMIP1	chr4	6114724	-
intron-5UTR	ENST00000541515	ENST00000282924		TCGA	RV	BRCA	TCGA-D8-A27R-01A	LUC7L2	chr7	139045068	+	JAKMIP1	chr4	6114724	-
intron-5UTR	ENST00000541515	ENST00000409831		TCGA	RV	BRCA	TCGA-D8-A27R-01A	LUC7L2	chr7	139045068	+	JAKMIP1	chr4	6114724	-
intron-5UTR	ENST00000541515	ENST00000410077		TCGA	RV	BRCA	TCGA-D8-A27R-01A	LUC7L2	chr7	139045068	+	JAKMIP1	chr4	6114724	-
intron-intron	ENST00000541515	ENST00000457227		TCGA	RV	BRCA	TCGA-D8-A27R-01A	LUC7L2	chr7	139045068	+	JAKMIP1	chr4	6114724	-
Frame-shit	ENST00000394287	ENST00000229922		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
Frame-shit	ENST00000394287	ENST00000489374		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
Frame-shit	ENST00000394287	ENST00000378990		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
5CDS-intron	ENST00000394287	ENST00000493172		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
5CDS-intron	ENST00000394287	ENST00000465994		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
Frame-shit	ENST00000300651	ENST00000229922		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
Frame-shit	ENST00000300651	ENST00000489374		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
Frame-shit	ENST00000300651	ENST00000378990		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
5CDS-intron	ENST00000300651	ENST00000493172		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
5CDS-intron	ENST00000300651	ENST00000465994		TCGA	RV	BRCA	TCGA-AC-A23C-01A	MED1	chr17	37595418	-	CAP2	chr6	17539500	+
5CDS-5UTR	ENST00000394287	ENST00000503581		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000394287	ENST00000370621		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-intron	ENST00000394287	ENST00000370616		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000394287	ENST00000393380		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-intron	ENST00000394287	ENST00000342421		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000394287	ENST00000370618		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-intron	ENST00000394287	ENST00000486069		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000300651	ENST00000503581		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000300651	ENST00000370621		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-intron	ENST00000300651	ENST00000370616		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000300651	ENST00000393380		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-intron	ENST00000300651	ENST00000342421		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-5UTR	ENST00000300651	ENST00000370618		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
5CDS-intron	ENST00000300651	ENST00000486069		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	MED1	chr17	37607291	-	EYS	chr6	66349785	-
In-frame	ENST00000315588	ENST00000318217		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000315588	ENST00000394649		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000315588	ENST00000579584		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
5CDS-5UTR	ENST00000315588	ENST00000584232		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
5CDS-intron	ENST00000315588	ENST00000583621		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000594368	ENST00000318217		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000594368	ENST00000394649		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000594368	ENST00000579584		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
5CDS-5UTR	ENST00000594368	ENST00000584232		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
5CDS-intron	ENST00000594368	ENST00000583621		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000599213	ENST00000318217		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000599213	ENST00000394649		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
In-frame	ENST00000599213	ENST00000579584		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
5CDS-5UTR	ENST00000599213	ENST00000584232		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
5CDS-intron	ENST00000599213	ENST00000583621		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	MED29	chr19	39884277	+	MYO1D	chr17	31076024	-
Frame-shit	ENST00000392328	ENST00000370540		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MFSD6	chr2	191302287	+	CXorf66	chrX	139040376	-
Frame-shit	ENST00000281416	ENST00000370540		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MFSD6	chr2	191302287	+	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000535751	ENST00000370540		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MFSD6	chr2	191302287	+	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000489793	ENST00000370540		TCGA	RV	BRCA	TCGA-A8-A06U-01A	MFSD6	chr2	191302287	+	CXorf66	chrX	139040376	-
5UTR-3CDS	ENST00000450904	ENST00000064778		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5UTR-intron	ENST00000450904	ENST00000450446		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5UTR-intron	ENST00000450904	ENST00000356467		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
In-frame	ENST00000362034	ENST00000064778		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5CDS-intron	ENST00000362034	ENST00000450446		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5CDS-intron	ENST00000362034	ENST00000356467		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5UTR-3CDS	ENST00000567045	ENST00000064778		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5UTR-intron	ENST00000567045	ENST00000450446		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
5UTR-intron	ENST00000567045	ENST00000356467		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MRPL21	chr11	68665395	-	FAM168A	chr11	73122581	-
intron-3CDS	ENST00000450904	ENST00000339514		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000450904	ENST00000392318		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000450904	ENST00000304164		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000450904	ENST00000392316		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000450904	ENST00000439065		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-intron	ENST00000450904	ENST00000496992		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
Frame-shit	ENST00000362034	ENST00000339514		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
Frame-shit	ENST00000362034	ENST00000392318		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
Frame-shit	ENST00000362034	ENST00000304164		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
Frame-shit	ENST00000362034	ENST00000392316		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
Frame-shit	ENST00000362034	ENST00000439065		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
5CDS-intron	ENST00000362034	ENST00000496992		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000567045	ENST00000339514		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000567045	ENST00000392318		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000567045	ENST00000304164		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000567045	ENST00000392316		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000567045	ENST00000439065		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
intron-intron	ENST00000567045	ENST00000496992		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668016	-	MYO1B	chr2	192265108	+
In-frame	ENST00000367321	ENST00000368250		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
In-frame	ENST00000367321	ENST00000368248		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
In-frame	ENST00000367321	ENST00000543064		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
In-frame	ENST00000367321	ENST00000537166		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000367307	ENST00000368250		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000367307	ENST00000368248		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000367307	ENST00000543064		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000367307	ENST00000537166		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000478643	ENST00000368250		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000478643	ENST00000368248		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000478643	ENST00000543064		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000478643	ENST00000537166		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	MTHFD1L	chr6	151355736	+	THEMIS	chr6	128040968	-
5UTR-5UTR	ENST00000216181	ENST00000332509		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-5UTR	ENST00000216181	ENST00000335539		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-5UTR	ENST00000216181	ENST00000402064		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-intron	ENST00000216181	ENST00000490473		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-5UTR	ENST00000216181	ENST00000436218		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-5UTR	ENST00000216181	ENST00000447598		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-5UTR	ENST00000216181	ENST00000435484		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-5UTR	ENST00000216181	ENST00000417303		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000332509		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000335539		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000402064		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-intron	ENST00000475726	ENST00000490473		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000436218		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000447598		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000435484		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000475726	ENST00000417303		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000332509		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000335539		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000402064		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-intron	ENST00000401701	ENST00000490473		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000436218		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000447598		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000435484		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000401701	ENST00000417303		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MYH9	chr22	36783852	-	PLA2G6	chr22	38565478	-
5UTR-intron	ENST00000452400	ENST00000520381		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000452400	ENST00000262215		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000452400	ENST00000517955		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000452400	ENST00000518230		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000267974	ENST00000520381		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000267974	ENST00000262215		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000267974	ENST00000517955		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000267974	ENST00000518230		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000524223	ENST00000520381		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000524223	ENST00000262215		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000524223	ENST00000517955		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000524223	ENST00000518230		TCGA	RV	BRCA	TCGA-A8-A08T-01A	NCOA2	chr8	71315935	-	ARFGEF1	chr8	68214701	-
5UTR-5UTR	ENST00000438493	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000438493	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-intron	ENST00000438493	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000452682	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000452682	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-intron	ENST00000452682	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
3UTR-5UTR	ENST00000498586	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
3UTR-5UTR	ENST00000498586	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
3UTR-intron	ENST00000498586	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000430396	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000430396	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-intron	ENST00000430396	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000374087	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000374087	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-intron	ENST00000374087	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000414907	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-5UTR	ENST00000414907	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
5UTR-intron	ENST00000414907	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-5UTR	ENST00000344348	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-5UTR	ENST00000344348	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-intron	ENST00000344348	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-5UTR	ENST00000374082	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-5UTR	ENST00000374082	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-intron	ENST00000374082	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-5UTR	ENST00000443446	ENST00000536058		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-5UTR	ENST00000443446	ENST00000553795		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
intron-intron	ENST00000443446	ENST00000374401		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	NCOA4	chr10	51565296	+	OR13A1	chr10	45803256	-
In-frame	ENST00000290231	ENST00000360469		TCGA	RV	BRCA	TCGA-A8-A091-01A	NCOA5	chr20	44708026	-	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000290231	ENST00000543233		TCGA	RV	BRCA	TCGA-A8-A091-01A	NCOA5	chr20	44708026	-	CDH4	chr20	60318619	+
Frame-shit	ENST00000294064	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000294064	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000294064	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000294064	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000294064	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000531509	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531509	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531509	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531509	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531509	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-3CDS	ENST00000544263	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000544263	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000544263	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000544263	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000544263	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000529024	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529024	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529024	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529024	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529024	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000532963	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000532963	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000532963	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000532963	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000532963	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000531619	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531619	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531619	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531619	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000531619	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-3CDS	ENST00000545272	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000545272	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000545272	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000545272	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5UTR-intron	ENST00000545272	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000526068	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000526068	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000526068	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000526068	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000526068	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000534628	ENST00000322776		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000534628	ENST00000532303		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000534628	ENST00000529927		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000534628	ENST00000415352		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000534628	ENST00000526169		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	NEU3	chr11	74700199	+	NDUFV1	chr11	67375867	+
intron-5UTR	ENST00000351960	ENST00000282091		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
intron-5UTR	ENST00000351960	ENST00000529816		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000358965	ENST00000282091		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000358965	ENST00000529816		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000393695	ENST00000282091		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000393695	ENST00000529816		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000543450	ENST00000282091		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000543450	ENST00000529816		TCGA	RV	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13514407	-
Frame-shit	ENST00000297438	ENST00000220751		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90775057	+
5CDS-intron	ENST00000297438	ENST00000540020		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90775057	+
Frame-shit	ENST00000451899	ENST00000220751		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90775057	+
5CDS-intron	ENST00000451899	ENST00000540020		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90775057	+
Frame-shit	ENST00000520659	ENST00000220751		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90775057	+
5CDS-intron	ENST00000520659	ENST00000540020		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90775057	+
Frame-shit	ENST00000420696	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000420696	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000420696	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000401534	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000401534	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000401534	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000559240	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000559240	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000559240	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000367897	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000367897	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000367897	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000540236	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000540236	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
Frame-shit	ENST00000540236	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000560641	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000560641	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000560641	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000474046	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000474046	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000474046	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000485769	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000485769	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000485769	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000540246	ENST00000251241		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000540246	ENST00000451169		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
intron-3CDS	ENST00000540246	ENST00000425628		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PBX1	chr1	164532548	+	DHX40	chr17	57679883	+
In-frame	ENST00000398640	ENST00000360839		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PCDHA11	chr5	140251079	+	ANKHD1	chr5	139892948	+
In-frame	ENST00000398640	ENST00000297183		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PCDHA11	chr5	140251079	+	ANKHD1	chr5	139892948	+
5CDS-intron	ENST00000398640	ENST00000394723		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PCDHA11	chr5	140251079	+	ANKHD1	chr5	139892948	+
5CDS-intron	ENST00000398640	ENST00000394722		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PCDHA11	chr5	140251079	+	ANKHD1	chr5	139892948	+
5CDS-intron	ENST00000398640	ENST00000462121		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PCDHA11	chr5	140251079	+	ANKHD1	chr5	139892948	+
5CDS-intron	ENST00000398640	ENST00000544120		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PCDHA11	chr5	140251079	+	ANKHD1	chr5	139892948	+
In-frame	ENST00000258229	ENST00000419821		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
In-frame	ENST00000258229	ENST00000392533		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5CDS-intron	ENST00000258229	ENST00000537952		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5CDS-intron	ENST00000258229	ENST00000543709		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5CDS-intron	ENST00000258229	ENST00000536979		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-3CDS	ENST00000344698	ENST00000419821		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-3CDS	ENST00000344698	ENST00000392533		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000344698	ENST00000537952		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000344698	ENST00000543709		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000344698	ENST00000536979		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-3CDS	ENST00000488780	ENST00000419821		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-3CDS	ENST00000488780	ENST00000392533		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000488780	ENST00000537952		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000488780	ENST00000543709		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000488780	ENST00000536979		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5UTR-3CDS	ENST00000520463	ENST00000419821		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5UTR-3CDS	ENST00000520463	ENST00000392533		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5UTR-intron	ENST00000520463	ENST00000537952		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5UTR-intron	ENST00000520463	ENST00000543709		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
5UTR-intron	ENST00000520463	ENST00000536979		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-3CDS	ENST00000430153	ENST00000419821		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-3CDS	ENST00000430153	ENST00000392533		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000430153	ENST00000537952		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000430153	ENST00000543709		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
intron-intron	ENST00000430153	ENST00000536979		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	PCNXL2	chr1	233270759	-	TAOK3	chr12	118639268	-
In-frame	ENST00000204549	ENST00000588240		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	PDCD7	chr15	65421370	-	TAF15	chr17	34144720	+
5CDS-5UTR	ENST00000204549	ENST00000592237		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	PDCD7	chr15	65421370	-	TAF15	chr17	34144720	+
5CDS-5UTR	ENST00000204549	ENST00000311979		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	PDCD7	chr15	65421370	-	TAF15	chr17	34144720	+
Frame-shit	ENST00000401827	ENST00000357849		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
5CDS-3UTR	ENST00000401827	ENST00000517736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
5CDS-intron	ENST00000401827	ENST00000519963		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
Frame-shit	ENST00000396642	ENST00000357849		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
5CDS-3UTR	ENST00000396642	ENST00000517736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
5CDS-intron	ENST00000396642	ENST00000519963		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
Frame-shit	ENST00000379419	ENST00000357849		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
5CDS-3UTR	ENST00000379419	ENST00000517736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
5CDS-intron	ENST00000379419	ENST00000519963		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
intron-3CDS	ENST00000518667	ENST00000357849		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
intron-3UTR	ENST00000518667	ENST00000517736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
intron-intron	ENST00000518667	ENST00000519963		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PDE7A	chr8	66636490	-	COPS5	chr8	67958195	-
Frame-shit	ENST00000275034	ENST00000316485		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
Frame-shit	ENST00000275034	ENST00000371158		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
5CDS-intron	ENST00000275034	ENST00000543708		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
5CDS-intron	ENST00000275034	ENST00000545929		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
5CDS-intron	ENST00000275034	ENST00000472512		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
intron-3CDS	ENST00000479165	ENST00000316485		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
intron-3CDS	ENST00000479165	ENST00000371158		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
intron-intron	ENST00000479165	ENST00000543708		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
intron-intron	ENST00000479165	ENST00000545929		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
intron-intron	ENST00000479165	ENST00000472512		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PHIP	chr6	79707131	-	INADL	chr1	62271120	+
5CDS-intron	ENST00000531066	ENST00000356761		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000531066	ENST00000299397		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000531066	ENST00000342245		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000531066	ENST00000533196		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000531066	ENST00000527275		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000355661	ENST00000356761		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000355661	ENST00000299397		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000355661	ENST00000342245		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000355661	ENST00000533196		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000355661	ENST00000527275		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000448080	ENST00000356761		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000448080	ENST00000299397		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000448080	ENST00000342245		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000448080	ENST00000533196		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-intron	ENST00000448080	ENST00000527275		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000532079	ENST00000356761		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000532079	ENST00000299397		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000532079	ENST00000342245		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000532079	ENST00000533196		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000532079	ENST00000527275		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000332954	ENST00000356761		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000332954	ENST00000299397		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000332954	ENST00000342245		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000332954	ENST00000533196		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
intron-intron	ENST00000332954	ENST00000527275		TCGA	RV	BRCA	TCGA-AR-A24K-01A	PLEKHA7	chr11	17035536	-	SMPD1	chr11	6414446	+
5CDS-5UTR	ENST00000392723	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392723	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392723	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392723	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000392723	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392723	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000361398	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000361398	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000361398	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000361398	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000361398	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000361398	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000271715	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000271715	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000271715	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000271715	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000271715	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000271715	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368863	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368863	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368863	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368863	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000368863	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368863	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000409503	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000409503	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000409503	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000409503	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000409503	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000409503	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000531094	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000531094	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000531094	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000531094	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000531094	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000531094	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000540984	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000540984	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000540984	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000540984	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5UTR-intron	ENST00000540984	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000540984	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000491586	ENST00000368373		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000491586	ENST00000327247		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000491586	ENST00000427500		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000491586	ENST00000536770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000491586	ENST00000428024		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000491586	ENST00000493842		TCGA	RV	BRCA	TCGA-A2-A04U-01A	POGZ	chr1	151395873	-	GBA	chr1	155210971	-
intron-3CDS	ENST00000400921	ENST00000378585		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	PRKCZ	chr1	1991030	+	GABRD	chr1	1956381	+
intron-3CDS	ENST00000400920	ENST00000378585		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	PRKCZ	chr1	1991030	+	GABRD	chr1	1956381	+
intron-3CDS	ENST00000479263	ENST00000378585		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	PRKCZ	chr1	1991030	+	GABRD	chr1	1956381	+
5CDS-intron	ENST00000338910	ENST00000368315		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
5CDS-intron	ENST00000338910	ENST00000313695		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
5CDS-intron	ENST00000338910	ENST00000361247		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
5CDS-5UTR	ENST00000338910	ENST00000368316		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
5CDS-5UTR	ENST00000338910	ENST00000462460		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
5CDS-intron	ENST00000338910	ENST00000477754		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
5CDS-intron	ENST00000338910	ENST00000313667		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-intron	ENST00000497722	ENST00000368315		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-intron	ENST00000497722	ENST00000313695		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-intron	ENST00000497722	ENST00000361247		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-5UTR	ENST00000497722	ENST00000368316		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-5UTR	ENST00000497722	ENST00000462460		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-intron	ENST00000497722	ENST00000477754		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
intron-intron	ENST00000497722	ENST00000313667		TCGA	RV	BRCA	TCGA-LL-A73Y-01A	PSPC1	chr13	20333463	-	ARHGEF2	chr1	155959142	-
In-frame	ENST00000371621	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
In-frame	ENST00000371621	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
5CDS-intron	ENST00000371621	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
In-frame	ENST00000541713	ENST00000371941		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
In-frame	ENST00000541713	ENST00000396220		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
5CDS-intron	ENST00000541713	ENST00000496915		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
5CDS-5UTR	ENST00000254066	ENST00000472863		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000254066	ENST00000498678		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000254066	ENST00000460160		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000254066	ENST00000476342		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000254066	ENST00000552000		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000254066	ENST00000470495		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000254066	ENST00000311626		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000254066	ENST00000490677		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000254066	ENST00000485909		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000254066	ENST00000489475		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000254066	ENST00000465120		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000472863		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000498678		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000460160		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394089	ENST00000476342		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394089	ENST00000552000		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394089	ENST00000470495		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000311626		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394089	ENST00000490677		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000485909		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000489475		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394089	ENST00000465120		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000472863		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000498678		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000460160		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000425707	ENST00000476342		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000425707	ENST00000552000		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000425707	ENST00000470495		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000311626		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000425707	ENST00000490677		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000485909		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000489475		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000425707	ENST00000465120		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000472863		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000498678		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000460160		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394086	ENST00000476342		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394086	ENST00000552000		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394086	ENST00000470495		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000311626		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394086	ENST00000490677		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000485909		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000489475		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394086	ENST00000465120		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000472863		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000498678		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000460160		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394081	ENST00000476342		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394081	ENST00000552000		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394081	ENST00000470495		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000311626		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000394081	ENST00000490677		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000485909		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000489475		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000394081	ENST00000465120		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000472863		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000498678		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000460160		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-intron	ENST00000420042	ENST00000476342		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-intron	ENST00000420042	ENST00000552000		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-intron	ENST00000420042	ENST00000470495		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000311626		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-intron	ENST00000420042	ENST00000490677		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000485909		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000489475		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
3UTR-5UTR	ENST00000420042	ENST00000465120		TCGA	RV	BRCA	TCGA-AO-A12D-01A	RARA	chr17	38508759	+	HOXB3	chr17	46632980	-
intron-intron	ENST00000254066	ENST00000579146		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000254066	ENST00000300658		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000254066	ENST00000378011		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000254066	ENST00000429199		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000394089	ENST00000579146		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000394089	ENST00000300658		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000394089	ENST00000378011		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000394089	ENST00000429199		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000425707	ENST00000579146		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000425707	ENST00000300658		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000425707	ENST00000378011		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
5UTR-intron	ENST00000425707	ENST00000429199		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394086	ENST00000579146		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394086	ENST00000300658		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394086	ENST00000378011		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394086	ENST00000429199		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394081	ENST00000579146		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394081	ENST00000300658		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394081	ENST00000378011		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000394081	ENST00000429199		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000420042	ENST00000579146		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000420042	ENST00000300658		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000420042	ENST00000378011		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000420042	ENST00000429199		TCGA	RV	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37830932	-
intron-intron	ENST00000487990	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000487990	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000487990	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000487990	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000487990	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000487990	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000399272	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000399272	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000399272	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000399272	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000399272	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000399272	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000489903	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000489903	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000489903	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000489903	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000489903	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000489903	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
5CDS-intron	ENST00000313806	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
5CDS-intron	ENST00000313806	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
5CDS-intron	ENST00000313806	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
5CDS-intron	ENST00000313806	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
5CDS-intron	ENST00000313806	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
5CDS-intron	ENST00000313806	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000443408	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000443408	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000443408	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000443408	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000443408	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000443408	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000482533	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000482533	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000482533	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000482533	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000482533	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000482533	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000481448	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000481448	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000481448	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000481448	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000481448	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000481448	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381132	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381132	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381132	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381132	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381132	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381132	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381135	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381135	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381135	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381135	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381135	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000381135	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000492600	ENST00000381815		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000492600	ENST00000381831		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000492600	ENST00000381839		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000492600	ENST00000543717		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000492600	ENST00000361093		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
intron-intron	ENST00000492600	ENST00000497313		TCGA	RV	BRCA	TCGA-D8-A1XF-01A	RCAN1	chr21	35987059	-	GART	chr21	34871404	-
In-frame	ENST00000415757	ENST00000293618		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000415757	ENST00000429001		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000415757	ENST00000398473		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000415757	ENST00000518444		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000415757	ENST00000347328		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000415757	ENST00000522085		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
5CDS-5UTR	ENST00000415757	ENST00000518561		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000389232	ENST00000293618		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000389232	ENST00000429001		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000389232	ENST00000398473		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000389232	ENST00000518444		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000389232	ENST00000347328		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000389232	ENST00000522085		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
5CDS-5UTR	ENST00000389232	ENST00000518561		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-3CDS	ENST00000559917	ENST00000293618		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-3CDS	ENST00000559917	ENST00000429001		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-3CDS	ENST00000559917	ENST00000398473		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-3CDS	ENST00000559917	ENST00000518444		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-3CDS	ENST00000559917	ENST00000347328		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-3CDS	ENST00000559917	ENST00000522085		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
intron-5UTR	ENST00000559917	ENST00000518561		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	RYR3	chr15	34034645	+	LARP4	chr12	50821545	+
In-frame	ENST00000220772	ENST00000408912		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000220772	ENST00000457010		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000220772	ENST00000563544		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000220772	ENST00000538189		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000220772	ENST00000268314		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
5CDS-5UTR	ENST00000220772	ENST00000412665		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000379845	ENST00000408912		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000379845	ENST00000457010		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000379845	ENST00000563544		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000379845	ENST00000538189		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
In-frame	ENST00000379845	ENST00000268314		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
5CDS-5UTR	ENST00000379845	ENST00000412665		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	SFRP1	chr8	41160980	-	ARMC5	chr16	31473243	+
5UTR-3CDS	ENST00000341259	ENST00000261726		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
5UTR-intron	ENST00000341259	ENST00000551604		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
intron-3CDS	ENST00000538307	ENST00000261726		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
intron-intron	ENST00000538307	ENST00000551604		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
5UTR-intron	ENST00000262160	ENST00000535628		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
5UTR-intron	ENST00000262160	ENST00000588982		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
5UTR-intron	ENST00000262160	ENST00000586438		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
5UTR-5UTR	ENST00000262160	ENST00000590800		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
5UTR-intron	ENST00000262160	ENST00000332053		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000402690	ENST00000535628		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000402690	ENST00000588982		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000402690	ENST00000586438		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-5UTR	ENST00000402690	ENST00000590800		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000402690	ENST00000332053		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000356825	ENST00000535628		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000356825	ENST00000588982		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000356825	ENST00000586438		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-5UTR	ENST00000356825	ENST00000590800		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000356825	ENST00000332053		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000586040	ENST00000535628		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000586040	ENST00000588982		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000586040	ENST00000586438		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-5UTR	ENST00000586040	ENST00000590800		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000586040	ENST00000332053		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000591214	ENST00000535628		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000591214	ENST00000588982		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000591214	ENST00000586438		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-5UTR	ENST00000591214	ENST00000590800		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000591214	ENST00000332053		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000587353	ENST00000535628		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000587353	ENST00000588982		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000587353	ENST00000586438		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-5UTR	ENST00000587353	ENST00000590800		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000587353	ENST00000332053		TCGA	RV	BRCA	TCGA-A8-A092-01A	SMAD2	chr18	45456732	-	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000598441	ENST00000408982		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000598441	ENST00000262477		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000598441	ENST00000537505		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000598441	ENST00000546142		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000598441	ENST00000341923		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000598441	ENST00000570487		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000221448	ENST00000408982		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000221448	ENST00000262477		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000221448	ENST00000537505		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000221448	ENST00000546142		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000221448	ENST00000341923		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000221448	ENST00000570487		TCGA	RV	BRCA	TCGA-AR-A5QN-01A	SNRNP70	chr19	49611860	+	RABEP1	chr17	5283828	+
5CDS-5UTR	ENST00000346348	ENST00000503581		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000346348	ENST00000370621		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000346348	ENST00000370616		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000346348	ENST00000393380		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000346348	ENST00000342421		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000346348	ENST00000370618		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000346348	ENST00000486069		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000314673	ENST00000503581		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000314673	ENST00000370621		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000314673	ENST00000370616		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000314673	ENST00000393380		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000314673	ENST00000342421		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000314673	ENST00000370618		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000314673	ENST00000486069		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000513865	ENST00000503581		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000513865	ENST00000370621		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000513865	ENST00000370616		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000513865	ENST00000393380		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000513865	ENST00000342421		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000513865	ENST00000370618		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000513865	ENST00000486069		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000505648	ENST00000503581		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000505648	ENST00000370621		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-intron	ENST00000505648	ENST00000370616		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000505648	ENST00000393380		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000505648	ENST00000342421		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000505648	ENST00000370618		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-intron	ENST00000505648	ENST00000486069		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000508980	ENST00000503581		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000508980	ENST00000370621		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-intron	ENST00000508980	ENST00000370616		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000508980	ENST00000393380		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000508980	ENST00000342421		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000508980	ENST00000370618		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
intron-intron	ENST00000508980	ENST00000486069		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369627	ENST00000503581		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369627	ENST00000370621		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000369627	ENST00000370616		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369627	ENST00000393380		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369627	ENST00000342421		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369627	ENST00000370618		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000369627	ENST00000486069		TCGA	RV	BRCA	TCGA-D8-A73W-01A	SNX14	chr6	86303297	-	EYS	chr6	66205886	-
In-frame	ENST00000331159	ENST00000394906		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
In-frame	ENST00000331159	ENST00000394908		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
In-frame	ENST00000331159	ENST00000585169		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
5CDS-intron	ENST00000331159	ENST00000577789		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
In-frame	ENST00000577233	ENST00000394906		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
In-frame	ENST00000577233	ENST00000394908		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
In-frame	ENST00000577233	ENST00000585169		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
5CDS-intron	ENST00000577233	ENST00000577789		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	SOCS7	chr17	36533668	+	FLOT2	chr17	27216044	-
5CDS-3UTR	ENST00000356577	ENST00000593699		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000356577	ENST00000372499		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000356577	ENST00000496424		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000290239	ENST00000593699		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000290239	ENST00000372499		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000290239	ENST00000496424		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000381692	ENST00000593699		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000381692	ENST00000372499		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000381692	ENST00000496424		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000300278	ENST00000593699		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000300278	ENST00000372499		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000300278	ENST00000496424		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000381679	ENST00000593699		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000381679	ENST00000372499		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000381679	ENST00000496424		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000470533	ENST00000593699		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000470533	ENST00000372499		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000470533	ENST00000496424		TCGA	RV	BRCA	TCGA-B6-A0IH-01A	SON	chr21	34932081	+	C10orf11	chr10	78084159	+
Frame-shit	ENST00000595535	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-5UTR	ENST00000595535	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-intron	ENST00000595535	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
Frame-shit	ENST00000352632	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-5UTR	ENST00000352632	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-intron	ENST00000352632	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
Frame-shit	ENST00000344104	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-5UTR	ENST00000344104	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-intron	ENST00000344104	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
Frame-shit	ENST00000338932	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-5UTR	ENST00000338932	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-intron	ENST00000338932	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
Frame-shit	ENST00000598249	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-5UTR	ENST00000598249	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-intron	ENST00000598249	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-3CDS	ENST00000392025	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-5UTR	ENST00000392025	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-intron	ENST00000392025	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-3CDS	ENST00000392023	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-5UTR	ENST00000392023	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-intron	ENST00000392023	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-3CDS	ENST00000593816	ENST00000582783		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-5UTR	ENST00000593816	ENST00000392035		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
intron-intron	ENST00000593816	ENST00000584868		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SPTBN4	chr19	41026058	+	C19orf47	chr19	40842314	-
5CDS-5UTR	ENST00000399640	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000399640	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000399640	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000319914	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000319914	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000319914	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000521180	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000521180	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000521180	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000522652	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000522652	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5CDS-5UTR	ENST00000522652	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
intron-5UTR	ENST00000519435	ENST00000341807		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
intron-5UTR	ENST00000519435	ENST00000303045		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
intron-5UTR	ENST00000519435	ENST00000435777		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ST3GAL1	chr8	134487962	-	COL22A1	chr8	139715590	-
5UTR-3CDS	ENST00000393240	ENST00000548058		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000393240	ENST00000261206		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000393240	ENST00000548324		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000261205	ENST00000548058		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000261205	ENST00000261206		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000261205	ENST00000548324		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
intron-3CDS	ENST00000457153	ENST00000548058		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
intron-3CDS	ENST00000457153	ENST00000261206		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
intron-3CDS	ENST00000457153	ENST00000548324		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000552744	ENST00000548058		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000552744	ENST00000261206		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000552744	ENST00000548324		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
3UTR-3CDS	ENST00000549454	ENST00000548058		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
3UTR-3CDS	ENST00000549454	ENST00000261206		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
3UTR-3CDS	ENST00000549454	ENST00000548324		TCGA	RV	BRCA	TCGA-D8-A1XY-01A	SYT1	chr12	79441142	+	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000294168	ENST00000317391		TCGA	RV	BRCA	TCGA-A8-A08F-01A	TAF6L	chr11	62538962	+	GLYATL1	chr11	58722243	+
5UTR-3CDS	ENST00000294168	ENST00000300079		TCGA	RV	BRCA	TCGA-A8-A08F-01A	TAF6L	chr11	62538962	+	GLYATL1	chr11	58722243	+
5UTR-intron	ENST00000294168	ENST00000524629		TCGA	RV	BRCA	TCGA-A8-A08F-01A	TAF6L	chr11	62538962	+	GLYATL1	chr11	58722243	+
intron-5UTR	ENST00000430069	ENST00000263967		TCGA	RV	BRCA	TCGA-E2-A14P-01A	TBL1XR1	chr3	176914909	-	PIK3CA	chr3	178916538	+
5UTR-5UTR	ENST00000457928	ENST00000263967		TCGA	RV	BRCA	TCGA-E2-A14P-01A	TBL1XR1	chr3	176914909	-	PIK3CA	chr3	178916538	+
5CDS-5UTR	ENST00000369093	ENST00000368904		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5CDS-intron	ENST00000369093	ENST00000392790		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5CDS-5UTR	ENST00000369093	ENST00000545804		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
intron-5UTR	ENST00000463089	ENST00000368904		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
intron-intron	ENST00000463089	ENST00000392790		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
intron-5UTR	ENST00000463089	ENST00000545804		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5UTR-5UTR	ENST00000369092	ENST00000368904		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5UTR-intron	ENST00000369092	ENST00000392790		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5UTR-5UTR	ENST00000369092	ENST00000545804		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5CDS-5UTR	ENST00000436547	ENST00000368904		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5CDS-intron	ENST00000436547	ENST00000392790		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
5CDS-5UTR	ENST00000436547	ENST00000545804		TCGA	RV	BRCA	TCGA-A2-A04U-01A	TIAL1	chr10	121355946	-	CUZD1	chr10	124605736	-
In-frame	ENST00000367287	ENST00000355294		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
In-frame	ENST00000367287	ENST00000367117		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
5CDS-intron	ENST00000367287	ENST00000304534		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
5CDS-intron	ENST00000367287	ENST00000491368		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
intron-3CDS	ENST00000482943	ENST00000355294		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
intron-3CDS	ENST00000482943	ENST00000367117		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
intron-intron	ENST00000482943	ENST00000304534		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
intron-intron	ENST00000482943	ENST00000491368		TCGA	RV	BRCA	TCGA-BH-A203-01A	TIMM17A	chr1	201926702	+	RASSF5	chr1	206711501	+
intron-3CDS	ENST00000456845	ENST00000487273		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000456845	ENST00000466936		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000456845	ENST00000481513		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000456845	ENST00000484143		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000412303	ENST00000487273		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000412303	ENST00000466936		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000412303	ENST00000481513		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000412303	ENST00000484143		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000456397	ENST00000487273		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000456397	ENST00000466936		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000456397	ENST00000481513		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
5CDS-intron	ENST00000456397	ENST00000484143		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
5UTR-3CDS	ENST00000397070	ENST00000487273		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
5UTR-3CDS	ENST00000397070	ENST00000466936		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
5UTR-3CDS	ENST00000397070	ENST00000481513		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
5UTR-intron	ENST00000397070	ENST00000484143		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000522434	ENST00000487273		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000522434	ENST00000466936		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-3CDS	ENST00000522434	ENST00000481513		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
intron-intron	ENST00000522434	ENST00000484143		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	TM2D2	chr8	38853732	-	ADAM9	chr8	38865405	+
Frame-shit	ENST00000311922	ENST00000297578		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5CDS-5UTR	ENST00000311922	ENST00000543107		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5CDS-intron	ENST00000311922	ENST00000523701		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
Frame-shit	ENST00000520847	ENST00000297578		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5CDS-5UTR	ENST00000520847	ENST00000543107		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5CDS-intron	ENST00000520847	ENST00000523701		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
intron-3CDS	ENST00000521778	ENST00000297578		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
intron-5UTR	ENST00000521778	ENST00000543107		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
intron-intron	ENST00000521778	ENST00000523701		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5UTR-3CDS	ENST00000519576	ENST00000297578		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5UTR-5UTR	ENST00000519576	ENST00000543107		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
5UTR-intron	ENST00000519576	ENST00000523701		TCGA	RV	BRCA	TCGA-E2-A105-01A	TRIB1	chr8	126445851	+	SLC25A32	chr8	104420012	-
In-frame	ENST00000373290	ENST00000373382		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
In-frame	ENST00000373290	ENST00000263559		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
In-frame	ENST00000373290	ENST00000395098		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
In-frame	ENST00000373290	ENST00000546041		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000373290	ENST00000490696		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000373290	ENST00000541711		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000373290	ENST00000489794		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000459981	ENST00000373382		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000459981	ENST00000263559		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000459981	ENST00000395098		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000459981	ENST00000546041		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000459981	ENST00000490696		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000459981	ENST00000541711		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000459981	ENST00000489794		TCGA	RV	BRCA	TCGA-E2-A15S-01A	TSPAN15	chr10	71211446	+	VPS26A	chr10	70915568	+
intron-5UTR	ENST00000537971	ENST00000536668		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537971	ENST00000544994		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537971	ENST00000228811		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537971	ENST00000540107		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
5UTR-5UTR	ENST00000011898	ENST00000536668		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
5UTR-5UTR	ENST00000011898	ENST00000544994		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
5UTR-5UTR	ENST00000011898	ENST00000228811		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
5UTR-5UTR	ENST00000011898	ENST00000540107		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000407263	ENST00000536668		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000407263	ENST00000544994		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000407263	ENST00000228811		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000407263	ENST00000540107		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000492305	ENST00000536668		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000492305	ENST00000544994		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000492305	ENST00000228811		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000492305	ENST00000540107		TCGA	RV	BRCA	TCGA-A8-A09T-01A	TSPAN9	chr12	3192885	+	PRR4	chr12	11001006	-
Frame-shit	ENST00000437048	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000574029	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000576149	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
5UTR-3CDS	ENST00000446250	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000291074	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000571805	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000401468	ENST00000331238		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	VPS53	chr17	600658	-	RTN4RL1	chr17	1841102	-
In-frame	ENST00000396604	ENST00000379719		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
5CDS-intron	ENST00000396604	ENST00000533680		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
In-frame	ENST00000396602	ENST00000379719		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
5CDS-intron	ENST00000396602	ENST00000533680		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
In-frame	ENST00000530463	ENST00000379719		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
5CDS-intron	ENST00000530463	ENST00000533680		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
In-frame	ENST00000396597	ENST00000379719		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
5CDS-intron	ENST00000396597	ENST00000533680		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
In-frame	ENST00000299606	ENST00000379719		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
5CDS-intron	ENST00000299606	ENST00000533680		TCGA	RV	BRCA	TCGA-E2-A15A-06A	ZNF143	chr11	9492967	+	IPO7	chr11	9462002	+
In-frame	ENST00000225402	ENST00000439730		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
Frame-shit	ENST00000225402	ENST00000576910		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
Frame-shit	ENST00000225402	ENST00000393456		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
5CDS-intron	ENST00000225402	ENST00000415811		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
5CDS-intron	ENST00000225402	ENST00000575949		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
5CDS-intron	ENST00000225402	ENST00000225567		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
intron-3CDS	ENST00000590321	ENST00000439730		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
intron-3CDS	ENST00000590321	ENST00000576910		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
intron-3CDS	ENST00000590321	ENST00000393456		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
intron-intron	ENST00000590321	ENST00000415811		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
intron-intron	ENST00000590321	ENST00000575949		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
intron-intron	ENST00000590321	ENST00000225567		TCGA	RV	BRCA	TCGA-BH-A0HF-01A	AATF	chr17	35348156	+	GOSR2	chr17	45015965	+
5CDS-3UTR	ENST00000532485	ENST00000281030		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ACER3	chr11	76572123	+	THRSP	chr11	77778705	+
3UTR-3UTR	ENST00000530182	ENST00000281030		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ACER3	chr11	76572123	+	THRSP	chr11	77778705	+
intron-3UTR	ENST00000526597	ENST00000281030		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ACER3	chr11	76572123	+	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000533873	ENST00000281030		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ACER3	chr11	76572123	+	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000538157	ENST00000281030		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ACER3	chr11	76572123	+	THRSP	chr11	77778705	+
intron-3UTR	ENST00000544113	ENST00000281030		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	ACER3	chr11	76572123	+	THRSP	chr11	77778705	+
In-frame	ENST00000216254	ENST00000352645		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41751473	+
In-frame	ENST00000216254	ENST00000351589		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41751473	+
In-frame	ENST00000396512	ENST00000352645		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41751473	+
In-frame	ENST00000396512	ENST00000351589		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000466237	ENST00000352645		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000466237	ENST00000351589		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41751473	+
In-frame	ENST00000379303	ENST00000379226		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379303	ENST00000476598		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379303	ENST00000379220		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
In-frame	ENST00000336430	ENST00000379226		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000336430	ENST00000476598		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000336430	ENST00000379220		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000379295	ENST00000379226		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379295	ENST00000476598		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379295	ENST00000379220		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000492081	ENST00000379226		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000492081	ENST00000476598		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000492081	ENST00000379220		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000373178	ENST00000225519		TCGA	RV	BRCA	TCGA-AR-A5QP-01A	ADPRHL2	chr1	36554716	+	SHPK	chr17	3533640	-
5CDS-intron	ENST00000373178	ENST00000572705		TCGA	RV	BRCA	TCGA-AR-A5QP-01A	ADPRHL2	chr1	36554716	+	SHPK	chr17	3533640	-
5CDS-5UTR	ENST00000308595	ENST00000392411		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000308595	ENST00000321280		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000308595	ENST00000428708		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000308595	ENST00000575712		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000308595	ENST00000575245		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000308595	ENST00000435091		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000308595	ENST00000321300		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-3UTR	ENST00000308595	ENST00000573894		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-intron	ENST00000308595	ENST00000416299		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000392411		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000321280		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000428708		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000575712		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000575245		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000435091		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-5UTR	ENST00000526285	ENST00000321300		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-3UTR	ENST00000526285	ENST00000573894		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
intron-intron	ENST00000526285	ENST00000416299		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000392411		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000321280		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000428708		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000575712		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000575245		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000435091		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-5UTR	ENST00000527176	ENST00000321300		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-3UTR	ENST00000527176	ENST00000573894		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
3UTR-intron	ENST00000527176	ENST00000416299		TCGA	RV	BRCA	TCGA-AO-A129-01A	ADRBK1	chr11	67051844	+	BAIAP2	chr17	79058632	+
5CDS-5UTR	ENST00000366535	ENST00000367012		TCGA	RV	BRCA	TCGA-BH-A203-01A	ADSS	chr1	244583472	-	SERTAD4	chr1	210411289	+
5CDS-3UTR	ENST00000366535	ENST00000490620		TCGA	RV	BRCA	TCGA-BH-A203-01A	ADSS	chr1	244583472	-	SERTAD4	chr1	210411289	+
5UTR-5UTR	ENST00000462358	ENST00000367012		TCGA	RV	BRCA	TCGA-BH-A203-01A	ADSS	chr1	244583472	-	SERTAD4	chr1	210411289	+
5UTR-3UTR	ENST00000462358	ENST00000490620		TCGA	RV	BRCA	TCGA-BH-A203-01A	ADSS	chr1	244583472	-	SERTAD4	chr1	210411289	+
5CDS-intron	ENST00000338110	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000338110	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000338110	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
3UTR-intron	ENST00000395248	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
3UTR-intron	ENST00000395248	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
3UTR-intron	ENST00000395248	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000575627	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000575627	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000575627	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000566897	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000566897	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000566897	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000569545	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000569545	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000569545	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000563060	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000563060	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000563060	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000412304	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000412304	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000412304	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
3UTR-intron	ENST00000564546	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
3UTR-intron	ENST00000564546	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
3UTR-intron	ENST00000564546	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000564595	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000564595	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
5CDS-intron	ENST00000564595	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000569798	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000569798	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000569798	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000395240	ENST00000414242		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000395240	ENST00000361479		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
intron-intron	ENST00000395240	ENST00000496525		TCGA	RV	BRCA	TCGA-D8-A1X6-01A	ALDOA	chr16	30081734	+	MPHOSPH8	chr13	20233807	+
Frame-shit	ENST00000379825	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379825	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379825	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379825	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379825	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379825	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000309615	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000309615	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000309615	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000309615	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000309615	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000309615	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000397172	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000397172	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000397172	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000397172	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000397172	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000397172	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000379817	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000379817	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000379817	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000379817	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000379817	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000379817	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000436040	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000436040	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000436040	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000436040	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000436040	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000436040	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379819	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379819	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379819	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379819	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379819	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000379819	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000468275	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000468275	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000468275	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000468275	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000468275	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000468275	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000463596	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000463596	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000463596	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000463596	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000463596	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000463596	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000476858	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000476858	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000476858	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000476858	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000476858	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000476858	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
5UTR-3CDS	ENST00000379813	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
5UTR-3CDS	ENST00000379813	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
5UTR-3CDS	ENST00000379813	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
5UTR-3CDS	ENST00000379813	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
5UTR-3CDS	ENST00000379813	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
5UTR-3CDS	ENST00000379813	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000473270	ENST00000396594		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000473270	ENST00000539815		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000473270	ENST00000543356		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000473270	ENST00000539208		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000473270	ENST00000447283		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
intron-3CDS	ENST00000473270	ENST00000377902		TCGA	RV	BRCA	TCGA-E2-A15H-01A	APTX	chr9	33001565	-	GNE	chr9	36220017	-
Frame-shit	ENST00000359373	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000359373	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5UTR-3CDS	ENST00000495878	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5UTR-5UTR	ENST00000495878	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000455638	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000455638	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000393605	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000393605	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000334211	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000334211	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000393609	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000393609	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000426523	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000426523	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000429686	ENST00000198801		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000429686	ENST00000526712		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	ARAP1	chr11	72410050	-	MOGAT2	chr11	75431037	+
In-frame	ENST00000276569	ENST00000368072		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
In-frame	ENST00000276569	ENST00000440949		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
5CDS-5UTR	ENST00000276569	ENST00000532508		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
intron-3CDS	ENST00000458464	ENST00000368072		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
intron-3CDS	ENST00000458464	ENST00000440949		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
intron-5UTR	ENST00000458464	ENST00000532508		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
intron-3CDS	ENST00000523384	ENST00000368072		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
intron-3CDS	ENST00000523384	ENST00000440949		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
intron-5UTR	ENST00000523384	ENST00000532508		TCGA	RV	BRCA	TCGA-A7-A4SE-01A	ARMC1	chr8	66525479	-	PEX19	chr1	160249635	-
In-frame	ENST00000295598	ENST00000355485		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
In-frame	ENST00000295598	ENST00000369510		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
In-frame	ENST00000295598	ENST00000310260		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
In-frame	ENST00000295598	ENST00000369509		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
5CDS-intron	ENST00000295598	ENST00000474344		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000537345	ENST00000355485		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000537345	ENST00000369510		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000537345	ENST00000310260		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000537345	ENST00000369509		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-intron	ENST00000537345	ENST00000474344		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000369496	ENST00000355485		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000369496	ENST00000369510		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000369496	ENST00000310260		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000369496	ENST00000369509		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-intron	ENST00000369496	ENST00000474344		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000491156	ENST00000355485		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000491156	ENST00000369510		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000491156	ENST00000310260		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-3CDS	ENST00000491156	ENST00000369509		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
intron-intron	ENST00000491156	ENST00000474344		TCGA	RV	BRCA	TCGA-E2-A15A-01A	ATP1A1	chr1	116916145	+	VANGL1	chr1	116206282	+
5UTR-3CDS	ENST00000353331	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000353331	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000353331	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000353331	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000353331	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000531224	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000531224	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000531224	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000531224	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000531224	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527536	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527536	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527536	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527536	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000527536	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000530767	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000530767	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000530767	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000530767	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000530767	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527759	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527759	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527759	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000527759	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000527759	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000031135	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000031135	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000031135	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000031135	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-5UTR	ENST00000031135	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000529917	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000529917	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000529917	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000529917	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-5UTR	ENST00000529917	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000392348	ENST00000354570		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000392348	ENST00000454590		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000392348	ENST00000544465		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-3CDS	ENST00000392348	ENST00000438100		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
intron-5UTR	ENST00000392348	ENST00000432797		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	BCLAF1	chr6	136610851	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000515059	ENST00000302475		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
5UTR-5UTR	ENST00000515059	ENST00000514701		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
5UTR-5UTR	ENST00000515059	ENST00000515367		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
5UTR-5UTR	ENST00000515059	ENST00000408903		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-3CDS	ENST00000440890	ENST00000302475		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000440890	ENST00000514701		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000440890	ENST00000515367		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000440890	ENST00000408903		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-3CDS	ENST00000264568	ENST00000302475		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000264568	ENST00000514701		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000264568	ENST00000515367		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000264568	ENST00000408903		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-3CDS	ENST00000394931	ENST00000302475		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000394931	ENST00000514701		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000394931	ENST00000515367		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000394931	ENST00000408903		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-3CDS	ENST00000502683	ENST00000302475		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000502683	ENST00000514701		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000502683	ENST00000515367		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
intron-5UTR	ENST00000502683	ENST00000408903		TCGA	RV	BRCA	TCGA-A2-A0ET-01A	BMPR1B	chr4	95917285	+	MCC	chr5	112406931	-
In-frame	ENST00000335221	ENST00000315392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000335221	ENST00000493200		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000335221	ENST00000539608		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000335221	ENST00000444911		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000335221	ENST00000394316		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
In-frame	ENST00000321892	ENST00000315392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000321892	ENST00000493200		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000321892	ENST00000539608		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000321892	ENST00000444911		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000321892	ENST00000394316		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
In-frame	ENST00000306378	ENST00000315392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000306378	ENST00000493200		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000306378	ENST00000539608		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000306378	ENST00000444911		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000306378	ENST00000394316		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
In-frame	ENST00000424123	ENST00000315392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000424123	ENST00000493200		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000424123	ENST00000539608		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000424123	ENST00000444911		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
5CDS-5UTR	ENST00000424123	ENST00000394316		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
intron-3CDS	ENST00000577770	ENST00000315392		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000577770	ENST00000493200		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000577770	ENST00000539608		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000577770	ENST00000444911		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
intron-5UTR	ENST00000577770	ENST00000394316		TCGA	RV	BRCA	TCGA-3C-AALI-01A	BPTF	chr17	65962772	+	PLXDC1	chr17	37243955	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000405204	ENST00000369042		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
Frame-shit	ENST00000405204	ENST00000429433		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
Frame-shit	ENST00000443043	ENST00000369042		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
Frame-shit	ENST00000443043	ENST00000429433		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
Frame-shit	ENST00000311381	ENST00000369042		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
Frame-shit	ENST00000311381	ENST00000429433		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
3UTR-3CDS	ENST00000489790	ENST00000369042		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
3UTR-3CDS	ENST00000489790	ENST00000429433		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	C6orf203	chr6	107361434	+	BEND3	chr6	107392154	-
5CDS-5UTR	ENST00000335762	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000335762	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000335762	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000335762	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000335762	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399655	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399655	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399655	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399655	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399655	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000480911	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000480911	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000480911	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000480911	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000480911	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399644	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399644	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399644	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399644	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399644	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000344100	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000344100	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000344100	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000344100	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000344100	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399638	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399638	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399638	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399638	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399638	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399629	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399629	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399629	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399629	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399629	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399597	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399597	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399597	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399597	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399597	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000327702	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000327702	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000327702	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000327702	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000327702	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399621	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399621	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399621	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399621	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399621	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399649	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399649	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399649	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399649	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399649	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399637	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399637	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399637	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399637	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399637	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000402845	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000402845	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000402845	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000402845	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000402845	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399591	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399591	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399591	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399591	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399591	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399641	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399641	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399641	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399641	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399641	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000347598	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000347598	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000347598	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000347598	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000347598	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399606	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399606	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399606	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399606	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399606	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399595	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399595	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399595	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399595	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399595	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399601	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399601	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399601	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399601	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399601	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399603	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399603	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399603	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399603	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399603	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399634	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399634	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399634	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399634	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399634	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399617	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399617	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000399617	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399617	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000399617	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000406454	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000406454	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000406454	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000406454	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000406454	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000491104	ENST00000537031		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000491104	ENST00000310594		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000491104	ENST00000397196		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000491104	ENST00000542408		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000491104	ENST00000545747		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CACNA1C	chr12	2229596	+	WNT5B	chr12	1740464	+
Frame-shit	ENST00000264645	ENST00000394287		TCGA	RV	BRCA	TCGA-E9-A228-01A	CASC3	chr17	38297860	+	MED1	chr17	37584043	-
Frame-shit	ENST00000264645	ENST00000300651		TCGA	RV	BRCA	TCGA-E9-A228-01A	CASC3	chr17	38297860	+	MED1	chr17	37584043	-
5CDS-5UTR	ENST00000374706	ENST00000462139		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000374706	ENST00000294753		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000374706	ENST00000366498		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000265375	ENST00000462139		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000265375	ENST00000294753		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000265375	ENST00000366498		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000339497	ENST00000462139		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000339497	ENST00000294753		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000339497	ENST00000366498		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000374704	ENST00000462139		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000374704	ENST00000294753		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
5CDS-5UTR	ENST00000374704	ENST00000366498		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
3UTR-5UTR	ENST00000492478	ENST00000462139		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
3UTR-5UTR	ENST00000492478	ENST00000294753		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
3UTR-5UTR	ENST00000492478	ENST00000366498		TCGA	RV	BRCA	TCGA-B6-A0I8-01A	CCNY	chr10	35790463	+	ZNF496	chr1	247473758	-
Frame-shit	ENST00000381527	ENST00000346872		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000394189		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000439167		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000535189		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000377944		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000377945		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000377952		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000377958		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000346243		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000350532		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000351680		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000467757		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000381527	ENST00000439016		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000381527	ENST00000583368		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000346872		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000394189		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000439167		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000535189		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000377944		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000377945		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000377952		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000377958		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000346243		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000350532		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000351680		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000467757		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000536792	ENST00000439016		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000536792	ENST00000583368		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000346872		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000394189		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000439167		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000535189		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000377944		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000377945		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000377952		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000377958		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000346243		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000350532		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000351680		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000467757		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000480323	ENST00000439016		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000480323	ENST00000583368		TCGA	RV	BRCA	TCGA-A8-A07I-01A	CDK8	chr13	26828906	+	IKZF3	chr17	37988404	-
5CDS-5UTR	ENST00000544484	ENST00000355819		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-3UTR	ENST00000544484	ENST00000544751		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-5UTR	ENST00000357008	ENST00000355819		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-3UTR	ENST00000357008	ENST00000544751		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-5UTR	ENST00000309577	ENST00000355819		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-3UTR	ENST00000309577	ENST00000544751		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-5UTR	ENST00000544040	ENST00000355819		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-3UTR	ENST00000544040	ENST00000544751		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
intron-5UTR	ENST00000540960	ENST00000355819		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
intron-3UTR	ENST00000540960	ENST00000544751		TCGA	RV	BRCA	TCGA-AO-A12A-01A	CHD4	chr12	6686951	-	CLEC9A	chr12	10194065	+
5CDS-5UTR	ENST00000409790	ENST00000571688		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000413364		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000339430		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000381810		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000570904		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000571459		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000409790	ENST00000572255		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000576036		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000574763		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000571976		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000574703		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571688		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000413364		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000339430		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000381810		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000570904		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571459		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000409552	ENST00000572255		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000576036		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000574763		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571976		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000574703		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000571688		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000413364		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000339430		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000381810		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000570904		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000571459		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-intron	ENST00000465491	ENST00000572255		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000576036		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000574763		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000571976		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000574703		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000571688		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000413364		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000339430		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000381810		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000570904		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000571459		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-intron	ENST00000381822	ENST00000572255		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000576036		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000574763		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000571976		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000574703		TCGA	RV	BRCA	TCGA-D8-A13Y-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000471014	ENST00000376876		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000471014	ENST00000376875		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000471014	ENST00000317669		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000471014	ENST00000480105		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000405570	ENST00000376876		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000405570	ENST00000376875		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000405570	ENST00000317669		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000405570	ENST00000480105		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000396183	ENST00000376876		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000396183	ENST00000376875		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000396183	ENST00000317669		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000396183	ENST00000480105		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000349496	ENST00000376876		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000349496	ENST00000376875		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000349496	ENST00000317669		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000349496	ENST00000480105		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000453024	ENST00000376876		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000453024	ENST00000376875		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000453024	ENST00000317669		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000453024	ENST00000480105		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000396185	ENST00000376876		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000396185	ENST00000376875		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000396185	ENST00000317669		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000396185	ENST00000480105		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	CTNNB1	chr3	41281934	+	SLC38A5	chrX	48327824	-
In-frame	ENST00000313077	ENST00000353139		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000313077	ENST00000360679		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000313077	ENST00000394406		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000313077	ENST00000335166		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000313077	ENST00000416895		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000313077	ENST00000361253		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000313077	ENST00000588142		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000313077	ENST00000589665		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000560848	ENST00000353139		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000560848	ENST00000360679		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000560848	ENST00000394406		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
In-frame	ENST00000560848	ENST00000335166		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000560848	ENST00000416895		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000560848	ENST00000361253		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000560848	ENST00000588142		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
5CDS-intron	ENST00000560848	ENST00000589665		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-3CDS	ENST00000435939	ENST00000353139		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-3CDS	ENST00000435939	ENST00000360679		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-3CDS	ENST00000435939	ENST00000394406		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-3CDS	ENST00000435939	ENST00000335166		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-intron	ENST00000435939	ENST00000416895		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-intron	ENST00000435939	ENST00000361253		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-intron	ENST00000435939	ENST00000588142		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
intron-intron	ENST00000435939	ENST00000589665		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CYFIP1	chr15	22935964	+	ACACA	chr17	35634007	-
Frame-shit	ENST00000338675	ENST00000397472		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
Frame-shit	ENST00000338675	ENST00000319863		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
In-frame	ENST00000338675	ENST00000526325		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5CDS-intron	ENST00000338675	ENST00000442059		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5CDS-intron	ENST00000338675	ENST00000524550		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5CDS-intron	ENST00000338675	ENST00000529966		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
Frame-shit	ENST00000382409	ENST00000397472		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
Frame-shit	ENST00000382409	ENST00000319863		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
In-frame	ENST00000382409	ENST00000526325		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5CDS-intron	ENST00000382409	ENST00000442059		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5CDS-intron	ENST00000382409	ENST00000524550		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5CDS-intron	ENST00000382409	ENST00000529966		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5UTR-3CDS	ENST00000525904	ENST00000397472		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5UTR-3CDS	ENST00000525904	ENST00000319863		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5UTR-3CDS	ENST00000525904	ENST00000526325		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5UTR-intron	ENST00000525904	ENST00000442059		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5UTR-intron	ENST00000525904	ENST00000524550		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
5UTR-intron	ENST00000525904	ENST00000529966		TCGA	RV	BRCA	TCGA-D8-A1JG-01B	DEAF1	chr11	674536	-	PDDC1	chr11	775142	-
Frame-shit	ENST00000264057	ENST00000486687		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-5UTR	ENST00000264057	ENST00000350136		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-5UTR	ENST00000264057	ENST00000392045		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-5UTR	ENST00000264057	ENST00000417495		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-5UTR	ENST00000264057	ENST00000343805		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-5UTR	ENST00000264057	ENST00000420434		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-5UTR	ENST00000264057	ENST00000373645		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-3UTR	ENST00000264057	ENST00000544128		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-3CDS	ENST00000409813	ENST00000486687		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000409813	ENST00000350136		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000409813	ENST00000392045		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000409813	ENST00000417495		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000409813	ENST00000343805		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000409813	ENST00000420434		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000409813	ENST00000373645		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-3UTR	ENST00000409813	ENST00000544128		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-3CDS	ENST00000489613	ENST00000486687		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000489613	ENST00000350136		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000489613	ENST00000392045		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000489613	ENST00000417495		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000489613	ENST00000343805		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000489613	ENST00000420434		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-5UTR	ENST00000489613	ENST00000373645		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
intron-3UTR	ENST00000489613	ENST00000544128		TCGA	RV	BRCA	TCGA-A8-A084-01A	DGKD	chr2	234263320	+	SP140	chr2	231101798	+
5CDS-3UTR	ENST00000400274	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
intron-3UTR	ENST00000427143	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
5CDS-3UTR	ENST00000318711	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
5CDS-3UTR	ENST00000417564	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
5CDS-3UTR	ENST00000457905	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
5CDS-3UTR	ENST00000466639	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
5CDS-3UTR	ENST00000435722	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
intron-3UTR	ENST00000479654	ENST00000428168		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRH1	chr12	11033655	-
intron-3CDS	ENST00000273009	ENST00000392415		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000273009	ENST00000410062		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000273009	ENST00000602710		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000273009	ENST00000602837		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000273009	ENST00000602959		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000273009	ENST00000602475		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000273009	ENST00000602632		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000360410	ENST00000392415		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000360410	ENST00000410062		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000360410	ENST00000602710		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000360410	ENST00000602837		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000360410	ENST00000602959		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000360410	ENST00000602475		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000360410	ENST00000602632		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
In-frame	ENST00000325385	ENST00000392415		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
In-frame	ENST00000325385	ENST00000410062		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
In-frame	ENST00000325385	ENST00000602710		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000325385	ENST00000602837		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000325385	ENST00000602959		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000325385	ENST00000602475		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000325385	ENST00000602632		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000409401	ENST00000392415		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000409401	ENST00000410062		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000409401	ENST00000602710		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000409401	ENST00000602837		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000409401	ENST00000602959		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000409401	ENST00000602475		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000409401	ENST00000602632		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
In-frame	ENST00000409307	ENST00000392415		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
In-frame	ENST00000409307	ENST00000410062		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
In-frame	ENST00000409307	ENST00000602710		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000409307	ENST00000602837		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000409307	ENST00000602959		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000409307	ENST00000602475		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-intron	ENST00000409307	ENST00000602632		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000470087	ENST00000392415		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000470087	ENST00000410062		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-3CDS	ENST00000470087	ENST00000602710		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000470087	ENST00000602837		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000470087	ENST00000602959		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000470087	ENST00000602475		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
intron-intron	ENST00000470087	ENST00000602632		TCGA	RV	BRCA	TCGA-BH-A18U-01A	DIS3L2	chr2	233164829	+	UBE2E3	chr2	181848770	+
5CDS-5UTR	ENST00000370935	ENST00000263650		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370935	ENST00000389989		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000370935	ENST00000525498		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370935	ENST00000542243		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370935	ENST00000348039		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000370935	ENST00000478260		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000370935	ENST00000528124		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000394363	ENST00000263650		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000394363	ENST00000389989		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000394363	ENST00000525498		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000394363	ENST00000542243		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000394363	ENST00000348039		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000394363	ENST00000478260		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000394363	ENST00000528124		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000338144	ENST00000263650		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000338144	ENST00000389989		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000338144	ENST00000525498		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000338144	ENST00000542243		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000338144	ENST00000348039		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000338144	ENST00000478260		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000338144	ENST00000528124		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-5UTR	ENST00000492263	ENST00000263650		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-5UTR	ENST00000492263	ENST00000389989		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-intron	ENST00000492263	ENST00000525498		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-5UTR	ENST00000492263	ENST00000542243		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-5UTR	ENST00000492263	ENST00000348039		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-intron	ENST00000492263	ENST00000478260		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
intron-intron	ENST00000492263	ENST00000528124		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370927	ENST00000263650		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370927	ENST00000389989		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000370927	ENST00000525498		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370927	ENST00000542243		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-5UTR	ENST00000370927	ENST00000348039		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000370927	ENST00000478260		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
5CDS-intron	ENST00000370927	ENST00000528124		TCGA	RV	BRCA	TCGA-A8-A08G-01A	ENOX2	chrX	129761932	-	OSBPL5	chr11	3150399	-
Frame-shit	ENST00000533608	ENST00000329255		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	EXT2	chr11	44257925	+	ALX4	chr11	44289172	-
Frame-shit	ENST00000358681	ENST00000329255		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	EXT2	chr11	44257925	+	ALX4	chr11	44289172	-
Frame-shit	ENST00000395673	ENST00000329255		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	EXT2	chr11	44257925	+	ALX4	chr11	44289172	-
Frame-shit	ENST00000343631	ENST00000329255		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	EXT2	chr11	44257925	+	ALX4	chr11	44289172	-
intron-3CDS	ENST00000529186	ENST00000329255		TCGA	RV	BRCA	TCGA-B6-A0X7-01A	EXT2	chr11	44257925	+	ALX4	chr11	44289172	-
5CDS-5UTR	ENST00000373871	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000373871	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5UTR-5UTR	ENST00000436342	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5UTR-intron	ENST00000436342	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
intron-5UTR	ENST00000373864	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
intron-intron	ENST00000373864	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-5UTR	ENST00000540618	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000540618	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-5UTR	ENST00000545175	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000545175	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-5UTR	ENST00000373863	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000373863	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5UTR-5UTR	ENST00000471498	ENST00000342745		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
5UTR-intron	ENST00000471498	ENST00000553497		TCGA	RV	BRCA	TCGA-BH-A18V-06A	EYA3	chr1	28362055	-	KIAA0247	chr14	70125230	+
Frame-shit	ENST00000583610	ENST00000308249		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37499433	-	PPM1E	chr17	57033010	+
In-frame	ENST00000394294	ENST00000308249		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37499433	-	PPM1E	chr17	57033010	+
In-frame	ENST00000264658	ENST00000308249		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37499433	-	PPM1E	chr17	57033010	+
In-frame	ENST00000577399	ENST00000308249		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37499433	-	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000315930	ENST00000366497		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000315930	ENST00000391828		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000315930	ENST00000336119		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000315930	ENST00000348069		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000315930	ENST00000366496		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000315930	ENST00000391827		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-intron	ENST00000315930	ENST00000474792		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000305414	ENST00000366497		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000305414	ENST00000391828		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000305414	ENST00000336119		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000305414	ENST00000348069		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000305414	ENST00000366496		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000305414	ENST00000391827		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-intron	ENST00000305414	ENST00000474792		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000441825	ENST00000366497		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000441825	ENST00000391828		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000441825	ENST00000336119		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000441825	ENST00000348069		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000441825	ENST00000366496		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
In-frame	ENST00000441825	ENST00000391827		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
5CDS-intron	ENST00000441825	ENST00000474792		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000370603	ENST00000366497		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000370603	ENST00000391828		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000370603	ENST00000336119		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000370603	ENST00000348069		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000370603	ENST00000366496		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000370603	ENST00000391827		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
5CDS-intron	ENST00000370603	ENST00000474792		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000541469	ENST00000366497		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000541469	ENST00000391828		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000541469	ENST00000336119		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000541469	ENST00000348069		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000541469	ENST00000366496		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-3CDS	ENST00000541469	ENST00000391827		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
intron-intron	ENST00000541469	ENST00000474792		TCGA	RV	BRCA	TCGA-A2-A04U-01A	FGF13	chrX	137939674	-	NLRP3	chr1	247611707	+
Frame-shit	ENST00000507166	ENST00000361757		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000507166	ENST00000587024		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000507166	ENST00000438103		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000358575	ENST00000361757		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000358575	ENST00000587024		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000358575	ENST00000438103		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000337488	ENST00000361757		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000337488	ENST00000587024		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000337488	ENST00000438103		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000507922	ENST00000361757		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000507922	ENST00000587024		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000507922	ENST00000438103		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000306932	ENST00000361757		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000306932	ENST00000587024		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
Frame-shit	ENST00000306932	ENST00000438103		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
intron-3CDS	ENST00000510668	ENST00000361757		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
intron-3CDS	ENST00000510668	ENST00000587024		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
intron-3CDS	ENST00000510668	ENST00000438103		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FIP1L1	chr4	54292132	+	SBNO2	chr19	1113703	-
5UTR-3CDS	ENST00000415807	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000415807	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000415807	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000415807	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000415807	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000336824	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000336824	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000336824	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000336824	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000336824	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000416957	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000416957	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000416957	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000416957	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000416957	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000392699	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000392699	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000392699	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000392699	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000392699	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000421757	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000421757	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000421757	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000421757	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000421757	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000423424	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000423424	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000423424	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000423424	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000423424	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000476794	ENST00000367879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000476794	ENST00000372212		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000476794	ENST00000462329		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000476794	ENST00000469256		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
intron-intron	ENST00000476794	ENST00000470820		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	FNDC3B	chr3	171757561	+	UCK2	chr1	165859441	+
Frame-shit	ENST00000606080	ENST00000344537		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000606080	ENST00000355917		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000606080	ENST00000338950		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000606080	ENST00000462989		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000538210	ENST00000344537		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000538210	ENST00000355917		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000538210	ENST00000338950		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000538210	ENST00000462989		TCGA	RV	BRCA	TCGA-AQ-A1H2-01A	FRK	chr6	116381131	-	DTNBP1	chr6	15533626	-
5CDS-3UTR	ENST00000536122	ENST00000564878		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-3UTR	ENST00000536122	ENST00000393062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-3UTR	ENST00000536122	ENST00000378247		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-intron	ENST00000536122	ENST00000563972		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-3UTR	ENST00000268699	ENST00000564878		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-3UTR	ENST00000268699	ENST00000393062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-3UTR	ENST00000268699	ENST00000378247		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-intron	ENST00000268699	ENST00000563972		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
3UTR-3UTR	ENST00000540721	ENST00000564878		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
3UTR-3UTR	ENST00000540721	ENST00000393062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
3UTR-3UTR	ENST00000540721	ENST00000378247		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
3UTR-intron	ENST00000540721	ENST00000563972		TCGA	RV	BRCA	TCGA-A8-A08P-01A	GAS8	chr16	90099332	+	SPIRE2	chr16	89916712	+
5CDS-3UTR	ENST00000437809	ENST00000583215		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000437809	ENST00000323372		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000368331	ENST00000583215		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000368331	ENST00000323372		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000271883	ENST00000583215		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000271883	ENST00000323372		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000361040	ENST00000583215		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-3UTR	ENST00000361040	ENST00000323372		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5UTR-3UTR	ENST00000471341	ENST00000583215		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5UTR-3UTR	ENST00000471341	ENST00000323372		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	GON4L	chr1	155791265	-	PIPOX	chr17	27371877	+
5CDS-5UTR	ENST00000316485	ENST00000312233		TCGA	RV	BRCA	TCGA-E2-A15P-01A	INADL	chr1	62483619	+	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000371158	ENST00000312233		TCGA	RV	BRCA	TCGA-E2-A15P-01A	INADL	chr1	62483619	+	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000543708	ENST00000312233		TCGA	RV	BRCA	TCGA-E2-A15P-01A	INADL	chr1	62483619	+	GLIS1	chr1	54065951	-
intron-5UTR	ENST00000545929	ENST00000312233		TCGA	RV	BRCA	TCGA-E2-A15P-01A	INADL	chr1	62483619	+	GLIS1	chr1	54065951	-
intron-5UTR	ENST00000472512	ENST00000312233		TCGA	RV	BRCA	TCGA-E2-A15P-01A	INADL	chr1	62483619	+	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000232766	ENST00000457573		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5CDS-5UTR	ENST00000232766	ENST00000341333		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5CDS-5UTR	ENST00000232766	ENST00000415259		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5CDS-5UTR	ENST00000232766	ENST00000395057		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5CDS-5UTR	ENST00000232766	ENST00000416589		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5CDS-intron	ENST00000232766	ENST00000463857		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5UTR-5UTR	ENST00000455924	ENST00000457573		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5UTR-5UTR	ENST00000455924	ENST00000341333		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5UTR-5UTR	ENST00000455924	ENST00000415259		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5UTR-5UTR	ENST00000455924	ENST00000395057		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5UTR-5UTR	ENST00000455924	ENST00000416589		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
5UTR-intron	ENST00000455924	ENST00000463857		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
3UTR-5UTR	ENST00000483201	ENST00000457573		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
3UTR-5UTR	ENST00000483201	ENST00000341333		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
3UTR-5UTR	ENST00000483201	ENST00000415259		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
3UTR-5UTR	ENST00000483201	ENST00000395057		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
3UTR-5UTR	ENST00000483201	ENST00000416589		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
3UTR-intron	ENST00000483201	ENST00000463857		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51708287	+
In-frame	ENST00000326764	ENST00000222345		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	LENG8	chr19	54969700	+	SIPA1L3	chr19	38631824	+
5CDS-intron	ENST00000326764	ENST00000476317		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	LENG8	chr19	54969700	+	SIPA1L3	chr19	38631824	+
intron-3CDS	ENST00000376514	ENST00000222345		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	LENG8	chr19	54969700	+	SIPA1L3	chr19	38631824	+
intron-intron	ENST00000376514	ENST00000476317		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	LENG8	chr19	54969700	+	SIPA1L3	chr19	38631824	+
5UTR-5UTR	ENST00000513024	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000513024	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000513024	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000513024	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000513024	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-intron	ENST00000513024	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-intron	ENST00000513024	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-intron	ENST00000513024	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000509638	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000509638	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000509638	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000509638	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000509638	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-intron	ENST00000509638	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-intron	ENST00000509638	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5UTR-intron	ENST00000509638	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000508501	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000508501	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000508501	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000508501	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000508501	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000508501	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000508501	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000508501	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512946	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512946	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512946	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512946	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512946	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512946	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512946	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512946	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000313860	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000313860	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000313860	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000313860	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000313860	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000313860	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000313860	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000313860	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512632	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512632	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512632	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512632	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512632	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512632	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512632	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512632	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512820	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512820	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512820	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512820	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-5UTR	ENST00000512820	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512820	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512820	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000512820	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000503057	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000503057	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000503057	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000503057	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000503057	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000503057	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000503057	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000503057	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000511496	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000511496	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000511496	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000511496	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000511496	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000511496	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000511496	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000511496	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000514096	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000514096	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000514096	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000514096	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000514096	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000514096	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000514096	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000514096	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509277	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509277	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509277	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509277	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509277	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000509277	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000509277	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000509277	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000396595	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000396595	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000396595	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000396595	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000396595	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000396595	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000396595	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000396595	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381753	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381753	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381753	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381753	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381753	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000381753	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000381753	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000381753	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509454	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509454	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509454	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509454	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000509454	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000509454	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000509454	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000509454	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515785	ENST00000295974		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515785	ENST00000513140		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515785	ENST00000508593		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515785	ENST00000506352		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515785	ENST00000511572		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000515785	ENST00000543538		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000515785	ENST00000502841		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
intron-intron	ENST00000515785	ENST00000504305		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	LIMCH1	chr4	41526495	+	APBB2	chr4	41102767	-
5CDS-intron	ENST00000375068	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375068	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375068	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375068	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375068	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375053	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375053	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375053	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375053	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375053	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000347546	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000347546	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000347546	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000347546	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000347546	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375062	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375062	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375062	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375062	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375062	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000218439	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000218439	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000218439	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000218439	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000218439	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375058	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375058	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375058	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375058	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375058	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375060	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375060	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375060	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375060	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000375060	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000396224	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000396224	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000396224	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000396224	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000396224	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497484	ENST00000322776		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497484	ENST00000532303		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497484	ENST00000529927		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497484	ENST00000415352		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497484	ENST00000526169		TCGA	RV	BRCA	TCGA-E9-A1R6-01A	MAGED2	chrX	54842445	+	NDUFV1	chr11	67375697	+
5CDS-5UTR	ENST00000352241	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-intron	ENST00000352241	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-intron	ENST00000352241	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-5UTR	ENST00000352241	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-5UTR	ENST00000448226	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-intron	ENST00000448226	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-intron	ENST00000448226	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
5CDS-5UTR	ENST00000448226	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000472437	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000472437	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000472437	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000472437	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000328528	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000328528	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000328528	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000328528	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000314589	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000314589	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000314589	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000314589	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000394355	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000394355	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000394355	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000394355	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000314557	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000314557	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000314557	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000314557	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000394351	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000394351	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000394351	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000394351	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000531774	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000531774	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000531774	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000531774	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000394348	ENST00000523821		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000394348	ENST00000522822		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-intron	ENST00000394348	ENST00000524341		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
intron-5UTR	ENST00000394348	ENST00000287025		TCGA	RV	BRCA	TCGA-EW-A1PC-01B	MITF	chr3	69788852	+	MTERFD1	chr8	97270928	-
In-frame	ENST00000449802	ENST00000259075		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000457476		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000392749		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000461338		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000402568		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000406287		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000405852		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
5CDS-intron	ENST00000449802	ENST00000403609		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-3CDS	ENST00000478884	ENST00000259075		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000457476		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000392749		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000461338		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000402568		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000406287		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000405852		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
intron-intron	ENST00000478884	ENST00000403609		TCGA	RV	BRCA	TCGA-E2-A14Z-01A	NBEAL1	chr2	203975005	+	TANK	chr2	162080426	+
In-frame	ENST00000356175	ENST00000353139		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000356175	ENST00000360679		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000356175	ENST00000394406		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000356175	ENST00000335166		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000356175	ENST00000416895		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000356175	ENST00000361253		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000356175	ENST00000588142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000356175	ENST00000589665		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000358273	ENST00000353139		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000358273	ENST00000360679		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000358273	ENST00000394406		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000358273	ENST00000335166		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000358273	ENST00000416895		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000358273	ENST00000361253		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000358273	ENST00000588142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000358273	ENST00000589665		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000431387	ENST00000353139		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000431387	ENST00000360679		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000431387	ENST00000394406		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
In-frame	ENST00000431387	ENST00000335166		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000431387	ENST00000416895		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000431387	ENST00000361253		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000431387	ENST00000588142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5CDS-intron	ENST00000431387	ENST00000589665		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000581113	ENST00000353139		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000581113	ENST00000360679		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000581113	ENST00000394406		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000581113	ENST00000335166		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000581113	ENST00000416895		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000581113	ENST00000361253		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000581113	ENST00000588142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000581113	ENST00000589665		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000417592	ENST00000353139		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000417592	ENST00000360679		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000417592	ENST00000394406		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000417592	ENST00000335166		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000417592	ENST00000416895		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000417592	ENST00000361253		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000417592	ENST00000588142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000417592	ENST00000589665		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000444181	ENST00000353139		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000444181	ENST00000360679		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000444181	ENST00000394406		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-3CDS	ENST00000444181	ENST00000335166		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000444181	ENST00000416895		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000444181	ENST00000361253		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000444181	ENST00000588142		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
intron-intron	ENST00000444181	ENST00000589665		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	NF1	chr17	29422387	+	ACACA	chr17	35518964	-
5UTR-3CDS	ENST00000425241	ENST00000435459		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000425241	ENST00000383787		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000425241	ENST00000383785		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000425241	ENST00000383788		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000425241	ENST00000603752		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000425241	ENST00000383781		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000425241	ENST00000603808		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000425241	ENST00000383786		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000323373	ENST00000435459		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000323373	ENST00000383787		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000323373	ENST00000383785		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000323373	ENST00000383788		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000323373	ENST00000603752		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000323373	ENST00000383781		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000323373	ENST00000603808		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000323373	ENST00000383786		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000393102	ENST00000435459		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000393102	ENST00000383787		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000393102	ENST00000383785		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000393102	ENST00000383788		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000393102	ENST00000603752		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000393102	ENST00000383781		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000393102	ENST00000603808		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000393102	ENST00000383786		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000435459		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000383787		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000383785		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000383788		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000603752		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000383781		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000603808		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000383786		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000435459		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000383787		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000383785		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000383788		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000603752		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000383781		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000603808		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000383786		TCGA	RV	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	14989413	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000351960	ENST00000449833		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000409161		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000423696		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000338508		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000409530		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000449116		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000357171		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000351960	ENST00000468619		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000449833		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000409161		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000423696		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000338508		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000409530		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000449116		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000357171		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000358965	ENST00000468619		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000449833		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000409161		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000423696		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000338508		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000409530		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000449116		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000357171		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000393695	ENST00000468619		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000449833		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000409161		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000423696		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000338508		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000409530		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000449116		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000357171		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000543450	ENST00000468619		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	NUMA1	chr11	71780888	-	SHANK2	chr11	70742672	-
5CDS-3UTR	ENST00000393533	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000393533	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000393533	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000393533	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000372814	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000372814	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000372814	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000372814	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000351030	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000351030	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000351030	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000351030	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000604420	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000604420	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000604420	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000604420	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
intron-3UTR	ENST00000535026	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
intron-intron	ENST00000535026	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
intron-3UTR	ENST00000535026	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
intron-intron	ENST00000535026	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000448249	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000448249	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000448249	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000448249	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000393527	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000393527	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000393527	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000393527	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000434106	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000434106	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000434106	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000434106	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000546203	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000546203	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000546203	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000546203	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000372791	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000372791	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000372791	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000372791	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000372807	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000372807	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000372807	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000372807	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000444119	ENST00000373371		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000444119	ENST00000373352		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-3UTR	ENST00000444119	ENST00000373360		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
5CDS-intron	ENST00000444119	ENST00000485806		TCGA	RV	BRCA	TCGA-BH-A0DS-01A	ODF2	chr9	131250304	+	SLC2A8	chr9	130169715	+
In-frame	ENST00000193322	ENST00000230085		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
5CDS-intron	ENST00000193322	ENST00000426155		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
5CDS-intron	ENST00000193322	ENST00000349379		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
5CDS-intron	ENST00000193322	ENST00000368982		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
intron-3CDS	ENST00000492130	ENST00000230085		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
intron-intron	ENST00000492130	ENST00000426155		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
intron-intron	ENST00000492130	ENST00000349379		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
intron-intron	ENST00000492130	ENST00000368982		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	OSTM1	chr6	108395454	-	SNX3	chr6	108544249	-
intron-intron	ENST00000535651	ENST00000545334		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000535651	ENST00000537927		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000535651	ENST00000318304		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000535651	ENST00000535047		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000535651	ENST00000542629		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000535651	ENST00000228425		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000535651	ENST00000541633		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000545334		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000537927		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000318304		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000535047		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000542629		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000228425		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000433979	ENST00000541633		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000545334		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000537927		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000318304		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000535047		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000542629		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000228425		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000538779	ENST00000541633		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000545334		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000537927		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000318304		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000535047		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000542629		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000228425		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
5CDS-intron	ENST00000266497	ENST00000541633		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000545334		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000537927		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000318304		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000535047		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000542629		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000228425		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
intron-intron	ENST00000536967	ENST00000541633		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	PIK3C2G	chr12	18552781	+	PPFIBP1	chr12	27826700	+
In-frame	ENST00000265465	ENST00000253925		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
In-frame	ENST00000265465	ENST00000389547		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
5CDS-intron	ENST00000265465	ENST00000530548		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
In-frame	ENST00000541089	ENST00000253925		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
In-frame	ENST00000541089	ENST00000389547		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
5CDS-intron	ENST00000541089	ENST00000530548		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
intron-3CDS	ENST00000534785	ENST00000253925		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
intron-3CDS	ENST00000534785	ENST00000389547		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
intron-intron	ENST00000534785	ENST00000530548		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	POLA2	chr11	65047097	+	PPFIA1	chr11	70200407	+
5CDS-5UTR	ENST00000253925	ENST00000530069		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
5CDS-5UTR	ENST00000253925	ENST00000349015		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
5CDS-5UTR	ENST00000253925	ENST00000531881		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
5CDS-5UTR	ENST00000389547	ENST00000530069		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
5CDS-5UTR	ENST00000389547	ENST00000349015		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
5CDS-5UTR	ENST00000389547	ENST00000531881		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
intron-5UTR	ENST00000530548	ENST00000530069		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
intron-5UTR	ENST00000530548	ENST00000349015		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
intron-5UTR	ENST00000530548	ENST00000531881		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67434487	-
Frame-shit	ENST00000228705	ENST00000416284		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
In-frame	ENST00000228705	ENST00000551619		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
Frame-shit	ENST00000228705	ENST00000550003		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
Frame-shit	ENST00000228705	ENST00000551449		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
5CDS-intron	ENST00000228705	ENST00000549456		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000551214	ENST00000416284		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000551214	ENST00000551619		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000551214	ENST00000550003		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000551214	ENST00000551449		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
intron-intron	ENST00000551214	ENST00000549456		TCGA	RV	BRCA	TCGA-E2-A14W-01A	PPM1H	chr12	63328272	-	FAM19A2	chr12	62104198	-
5UTR-3UTR	ENST00000409535	ENST00000288221		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RAD54L2	chr3	51575666	+	ERC2	chr3	55545304	-
5UTR-5UTR	ENST00000409535	ENST00000486496		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RAD54L2	chr3	51575666	+	ERC2	chr3	55545304	-
intron-3UTR	ENST00000296477	ENST00000288221		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RAD54L2	chr3	51575666	+	ERC2	chr3	55545304	-
intron-5UTR	ENST00000296477	ENST00000486496		TCGA	RV	BRCA	TCGA-BH-A18U-01A	RAD54L2	chr3	51575666	+	ERC2	chr3	55545304	-
intron-3CDS	ENST00000374761	ENST00000400301		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374761	ENST00000308271		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374761	ENST00000374732		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374761	ENST00000529637		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-5UTR	ENST00000374761	ENST00000479177		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-intron	ENST00000374761	ENST00000421625		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
Frame-shit	ENST00000290101	ENST00000400301		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
Frame-shit	ENST00000290101	ENST00000308271		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
Frame-shit	ENST00000290101	ENST00000374732		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
Frame-shit	ENST00000290101	ENST00000529637		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5CDS-5UTR	ENST00000290101	ENST00000479177		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5CDS-intron	ENST00000290101	ENST00000421625		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374763	ENST00000400301		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374763	ENST00000308271		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374763	ENST00000374732		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-3CDS	ENST00000374763	ENST00000529637		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-5UTR	ENST00000374763	ENST00000479177		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
intron-intron	ENST00000374763	ENST00000421625		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374765	ENST00000400301		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374765	ENST00000308271		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374765	ENST00000374732		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374765	ENST00000529637		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-5UTR	ENST00000374765	ENST00000479177		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-intron	ENST00000374765	ENST00000421625		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000542643	ENST00000400301		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000542643	ENST00000308271		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000542643	ENST00000374732		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000542643	ENST00000529637		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-5UTR	ENST00000542643	ENST00000479177		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-intron	ENST00000542643	ENST00000421625		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374757	ENST00000400301		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374757	ENST00000308271		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374757	ENST00000374732		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-3CDS	ENST00000374757	ENST00000529637		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-5UTR	ENST00000374757	ENST00000479177		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
5UTR-intron	ENST00000374757	ENST00000421625		TCGA	RV	BRCA	TCGA-LL-A6FQ-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22007327	-
In-frame	ENST00000356208	ENST00000276570		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66988895	+
5CDS-3UTR	ENST00000356208	ENST00000519330		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66988895	+
intron-3CDS	ENST00000440234	ENST00000276570		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66988895	+
intron-3UTR	ENST00000440234	ENST00000519330		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66988895	+
In-frame	ENST00000371219	ENST00000276570		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66988895	+
5CDS-3UTR	ENST00000371219	ENST00000519330		TCGA	RV	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66988895	+
In-frame	ENST00000312960	ENST00000458385		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
5CDS-intron	ENST00000312960	ENST00000514798		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
5CDS-intron	ENST00000312960	ENST00000296775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
5CDS-intron	ENST00000312960	ENST00000502992		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
intron-3CDS	ENST00000472885	ENST00000458385		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
intron-intron	ENST00000472885	ENST00000514798		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
intron-intron	ENST00000472885	ENST00000296775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
intron-intron	ENST00000472885	ENST00000502992		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	SIAH2	chr3	150480220	-	KIAA1430	chr4	186085333	-
5CDS-5UTR	ENST00000336915	ENST00000424486		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53800090	-
5CDS-5UTR	ENST00000336915	ENST00000575734		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53800090	-
5CDS-5UTR	ENST00000336915	ENST00000570586		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53800090	-
5CDS-5UTR	ENST00000584924	ENST00000424486		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53800090	-
5CDS-5UTR	ENST00000584924	ENST00000575734		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53800090	-
5CDS-5UTR	ENST00000584924	ENST00000570586		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53800090	-
5CDS-3UTR	ENST00000377892	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377892	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377892	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-5UTR	ENST00000377892	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377892	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377892	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377890	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377890	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377890	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-5UTR	ENST00000377890	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377890	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377890	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377891	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377891	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377891	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-5UTR	ENST00000377891	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377891	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377891	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377889	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377889	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000377889	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-5UTR	ENST00000377889	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377889	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000377889	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000535296	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000535296	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-3UTR	ENST00000535296	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-5UTR	ENST00000535296	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000535296	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-intron	ENST00000535296	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000338663	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000338663	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000338663	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-5UTR	ENST00000338663	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-intron	ENST00000338663	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-intron	ENST00000338663	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000538682	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000538682	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000538682	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-5UTR	ENST00000538682	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-intron	ENST00000538682	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-intron	ENST00000538682	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000536981	ENST00000531709		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000536981	ENST00000294172		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-3UTR	ENST00000536981	ENST00000532297		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-5UTR	ENST00000536981	ENST00000533048		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-intron	ENST00000536981	ENST00000531131		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
intron-intron	ENST00000536981	ENST00000439713		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SLC3A2	chr11	62623853	+	NXF1	chr11	62562479	-
5CDS-5UTR	ENST00000554684	ENST00000313833		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-3UTR	ENST00000554684	ENST00000555087		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000554684	ENST00000440021		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000428424	ENST00000313833		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-3UTR	ENST00000428424	ENST00000555087		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000428424	ENST00000440021		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000337238	ENST00000313833		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-3UTR	ENST00000337238	ENST00000555087		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000337238	ENST00000440021		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000554943	ENST00000313833		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-3UTR	ENST00000554943	ENST00000555087		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000554943	ENST00000440021		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000555462	ENST00000313833		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-3UTR	ENST00000555462	ENST00000555087		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
5CDS-5UTR	ENST00000555462	ENST00000440021		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
intron-5UTR	ENST00000555718	ENST00000313833		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
intron-3UTR	ENST00000555718	ENST00000555087		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
intron-5UTR	ENST00000555718	ENST00000440021		TCGA	RV	BRCA	TCGA-A8-A079-01A	SMEK1	chr14	91975850	-	FBXO34	chr14	55817099	+
In-frame	ENST00000458013	ENST00000292205		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
In-frame	ENST00000458013	ENST00000368474		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
5CDS-5UTR	ENST00000458013	ENST00000368471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
5CDS-5UTR	ENST00000458013	ENST00000471068		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
In-frame	ENST00000368843	ENST00000292205		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
In-frame	ENST00000368843	ENST00000368474		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
5CDS-5UTR	ENST00000368843	ENST00000368471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
5CDS-5UTR	ENST00000368843	ENST00000471068		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
In-frame	ENST00000368838	ENST00000292205		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
In-frame	ENST00000368838	ENST00000368474		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
5CDS-5UTR	ENST00000368838	ENST00000368471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
5CDS-5UTR	ENST00000368838	ENST00000471068		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
intron-3CDS	ENST00000482791	ENST00000292205		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
intron-3CDS	ENST00000482791	ENST00000368474		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
intron-5UTR	ENST00000482791	ENST00000368471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
intron-5UTR	ENST00000482791	ENST00000471068		TCGA	RV	BRCA	TCGA-A2-A04X-01A	SNX27	chr1	151611595	+	ADAR	chr1	154575102	-
In-frame	ENST00000336308	ENST00000583610		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000336308	ENST00000394294		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000336308	ENST00000264658		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000336308	ENST00000577399		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000578232	ENST00000583610		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000578232	ENST00000394294		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000578232	ENST00000264658		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000578232	ENST00000577399		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000544210	ENST00000583610		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000544210	ENST00000394294		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000544210	ENST00000264658		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000544210	ENST00000577399		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000394250	ENST00000583610		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000394250	ENST00000394294		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000394250	ENST00000264658		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000394250	ENST00000577399		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000580611	ENST00000583610		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000580611	ENST00000394294		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000580611	ENST00000264658		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
In-frame	ENST00000580611	ENST00000577399		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37817338	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000361905	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000361905	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000361905	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000361905	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000361905	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527636	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527636	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527636	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527636	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527636	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527575	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527575	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000527575	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527575	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000527575	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000334310	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000334310	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000334310	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000334310	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000334310	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000361985	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000361985	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000361985	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000361985	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000361985	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000526600	ENST00000334956		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000526600	ENST00000539723		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-3CDS	ENST00000526600	ENST00000550549		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000526600	ENST00000538608		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000526600	ENST00000526746		TCGA	RV	BRCA	TCGA-E2-A15E-06A	TEAD1	chr11	12697108	+	PARVA	chr11	12495292	+
intron-5UTR	ENST00000409262	ENST00000409731		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
intron-5UTR	ENST00000409262	ENST00000345517		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
intron-5UTR	ENST00000409262	ENST00000409918		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
intron-5UTR	ENST00000409262	ENST00000409624		TCGA	RV	BRCA	TCGA-E2-A1AZ-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
5UTR-3CDS	ENST00000258991	ENST00000284116		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000258991	ENST00000581140		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000258991	ENST00000581276		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
intron-3CDS	ENST00000583097	ENST00000284116		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
intron-3CDS	ENST00000583097	ENST00000581140		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
intron-3CDS	ENST00000583097	ENST00000581276		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000584379	ENST00000284116		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000584379	ENST00000581140		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000584379	ENST00000581276		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
intron-3CDS	ENST00000581812	ENST00000284116		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
intron-3CDS	ENST00000581812	ENST00000581140		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
intron-3CDS	ENST00000581812	ENST00000581276		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	TEX2	chr17	62340528	-	GDPD1	chr17	57322775	+
5UTR-5UTR	ENST00000354618	ENST00000529984		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000528332		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000372104		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000448481		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000456914		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000354383		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000355498		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000372110		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000372098		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000372115		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000488731		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000372100		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000450313		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000531105		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000354618	ENST00000528013		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000529984		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000528332		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000372104		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000448481		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000456914		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000354383		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000355498		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000372110		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000372098		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000372115		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000488731		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000372100		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000450313		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000531105		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
5UTR-5UTR	ENST00000469141	ENST00000528013		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000529984		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000528332		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000372104		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000448481		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000456914		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000354383		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000355498		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000372110		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000372098		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000372115		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000488731		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000372100		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000450313		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000531105		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
intron-5UTR	ENST00000466743	ENST00000528013		TCGA	RV	BRCA	TCGA-E2-A14T-01A	THRAP3	chr1	36690106	+	MUTYH	chr1	45800183	-
3UTR-3CDS	ENST00000337273	ENST00000453096		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000337273	ENST00000531757		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000337273	ENST00000534641		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000337273	ENST00000265963		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000337273	ENST00000524753		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000337273	ENST00000530496		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-5UTR	ENST00000337273	ENST00000526630		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-3CDS	ENST00000454282	ENST00000453096		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000454282	ENST00000531757		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000454282	ENST00000534641		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000454282	ENST00000265963		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000454282	ENST00000524753		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000454282	ENST00000530496		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-5UTR	ENST00000454282	ENST00000526630		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-3CDS	ENST00000447967	ENST00000453096		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000447967	ENST00000531757		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000447967	ENST00000534641		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000447967	ENST00000265963		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000447967	ENST00000524753		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000447967	ENST00000530496		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-5UTR	ENST00000447967	ENST00000526630		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-3CDS	ENST00000523768	ENST00000453096		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000523768	ENST00000531757		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000523768	ENST00000534641		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000523768	ENST00000265963		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000523768	ENST00000524753		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000523768	ENST00000530496		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-5UTR	ENST00000523768	ENST00000526630		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-3CDS	ENST00000513944	ENST00000453096		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000513944	ENST00000531757		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000513944	ENST00000534641		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000513944	ENST00000265963		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000513944	ENST00000524753		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-intron	ENST00000513944	ENST00000530496		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
intron-5UTR	ENST00000513944	ENST00000526630		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-3CDS	ENST00000506351	ENST00000453096		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000506351	ENST00000531757		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000506351	ENST00000534641		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000506351	ENST00000265963		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000506351	ENST00000524753		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-intron	ENST00000506351	ENST00000530496		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
3UTR-5UTR	ENST00000506351	ENST00000526630		TCGA	RV	BRCA	TCGA-E2-A1L7-01A	TNPO1	chr5	72201272	+	GTF2H1	chr11	18373428	+
5UTR-3CDS	ENST00000399537	ENST00000242351		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
5UTR-3CDS	ENST00000399537	ENST00000464606		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
5UTR-3CDS	ENST00000399537	ENST00000471652		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
5UTR-3CDS	ENST00000430969	ENST00000242351		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
5UTR-3CDS	ENST00000430969	ENST00000464606		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
5UTR-3CDS	ENST00000430969	ENST00000471652		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
intron-3CDS	ENST00000399434	ENST00000242351		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
intron-3CDS	ENST00000399434	ENST00000464606		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
intron-3CDS	ENST00000399434	ENST00000471652		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	TNRC18	chr7	5463072	-	ZC3HAV1	chr7	138768778	-
Frame-shit	ENST00000321105	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000321105	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
intron-3CDS	ENST00000540524	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
intron-5UTR	ENST00000540524	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-3CDS	ENST00000542570	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-5UTR	ENST00000542570	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-3CDS	ENST00000582230	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-5UTR	ENST00000582230	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
Frame-shit	ENST00000261497	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A086-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
5CDS-5UTR	ENST00000356136	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000356136	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000356136	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000356136	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000356136	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000356136	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000356136	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000356136	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-5UTR	ENST00000528420	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
5CDS-intron	ENST00000528420	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000533454	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000533454	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000531818	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000531818	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000532130	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000532130	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000539288	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000539288	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000525872	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-intron	ENST00000525872	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000435085		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000307198		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000419228		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000447974		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000289488		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000539271		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000423494		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000539587		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000538478		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000324866		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-5UTR	ENST00000538870	ENST00000439209		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000541614		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000536917		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
intron-intron	ENST00000538870	ENST00000440313		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	UVRAG	chr11	75623083	+	LRTOMT	chr11	71799343	+
3UTR-5UTR	ENST00000395996	ENST00000292539		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
3UTR-3UTR	ENST00000395996	ENST00000529009		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
3UTR-intron	ENST00000395996	ENST00000435887		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5CDS-5UTR	ENST00000358544	ENST00000292539		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5CDS-3UTR	ENST00000358544	ENST00000529009		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5CDS-intron	ENST00000358544	ENST00000435887		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5CDS-5UTR	ENST00000357162	ENST00000292539		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5CDS-3UTR	ENST00000357162	ENST00000529009		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5CDS-intron	ENST00000357162	ENST00000435887		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-5UTR	ENST00000355155	ENST00000292539		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-3UTR	ENST00000355155	ENST00000529009		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-intron	ENST00000355155	ENST00000435887		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-5UTR	ENST00000441350	ENST00000292539		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-3UTR	ENST00000441350	ENST00000529009		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-intron	ENST00000441350	ENST00000435887		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-5UTR	ENST00000521932	ENST00000292539		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-3UTR	ENST00000521932	ENST00000529009		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
intron-intron	ENST00000521932	ENST00000435887		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	VPS13B	chr8	100589861	+	PPP1R16A	chr8	145721844	+
5UTR-3CDS	ENST00000340360	ENST00000526355		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000340360	ENST00000282249		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000340360	ENST00000347596		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
intron-3CDS	ENST00000321448	ENST00000526355		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
intron-3CDS	ENST00000321448	ENST00000282249		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
intron-3CDS	ENST00000321448	ENST00000347596		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000527087	ENST00000526355		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000527087	ENST00000282249		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000527087	ENST00000347596		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000533598	ENST00000526355		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000533598	ENST00000282249		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
5UTR-3CDS	ENST00000533598	ENST00000347596		TCGA	RV	BRCA	TCGA-XX-A899-01A	XRRA1	chr11	74656063	-	GUCY1A2	chr11	106647308	-
intron-3CDS	ENST00000526343	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000526343	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3UTR	ENST00000526343	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-intron	ENST00000526343	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
In-frame	ENST00000282441	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
In-frame	ENST00000282441	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
5CDS-3UTR	ENST00000282441	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
5CDS-intron	ENST00000282441	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000537274	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000537274	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3UTR	ENST00000537274	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-intron	ENST00000537274	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000345877	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000345877	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3UTR	ENST00000345877	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-intron	ENST00000345877	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000531439	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000531439	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3UTR	ENST00000531439	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-intron	ENST00000531439	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
In-frame	ENST00000524575	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
In-frame	ENST00000524575	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
5CDS-3UTR	ENST00000524575	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
5CDS-intron	ENST00000524575	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000528834	ENST00000300737		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3CDS	ENST00000528834	ENST00000527651		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-3UTR	ENST00000528834	ENST00000527484		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
intron-intron	ENST00000528834	ENST00000533977		TCGA	RV	BRCA	TCGA-A8-A086-01A	YAP1	chr11	102080295	+	STIM1	chr11	4045103	+
Frame-shit	ENST00000316059	ENST00000395074		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ZFP91	chr11	58347095	+	LPXN	chr11	58338186	-
Frame-shit	ENST00000316059	ENST00000528954		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ZFP91	chr11	58347095	+	LPXN	chr11	58338186	-
Frame-shit	ENST00000316059	ENST00000528489		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	ZFP91	chr11	58347095	+	LPXN	chr11	58338186	-
Frame-shit	ENST00000265707	ENST00000311351		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
Frame-shit	ENST00000265707	ENST00000520755		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000265707	ENST00000522515		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
Frame-shit	ENST00000379866	ENST00000311351		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
Frame-shit	ENST00000379866	ENST00000520755		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000379866	ENST00000522515		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000520772	ENST00000311351		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000520772	ENST00000520755		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
intron-5UTR	ENST00000520772	ENST00000522515		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
Frame-shit	ENST00000541111	ENST00000311351		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
Frame-shit	ENST00000541111	ENST00000520755		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000541111	ENST00000522515		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
3UTR-3CDS	ENST00000523755	ENST00000311351		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
3UTR-3CDS	ENST00000523755	ENST00000520755		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
3UTR-5UTR	ENST00000523755	ENST00000522515		TCGA	RV	BRCA	TCGA-E2-A105-01A	ADAM18	chr8	39581426	+	LSM1	chr8	38029551	-
Frame-shit	ENST00000396029	ENST00000246186		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ADNP	chr20	49518554	-	MMP24	chr20	33862075	+
In-frame	ENST00000396032	ENST00000246186		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ADNP	chr20	49518554	-	MMP24	chr20	33862075	+
Frame-shit	ENST00000371602	ENST00000246186		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ADNP	chr20	49518554	-	MMP24	chr20	33862075	+
Frame-shit	ENST00000349014	ENST00000246186		TCGA	RV	BRCA	TCGA-A8-A08J-01A	ADNP	chr20	49518554	-	MMP24	chr20	33862075	+
5CDS-5UTR	ENST00000280772	ENST00000316629		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000280772	ENST00000395284		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-3UTR	ENST00000280772	ENST00000519760		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000280772	ENST00000448257		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-intron	ENST00000280772	ENST00000373809		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000373827	ENST00000316629		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000373827	ENST00000395284		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-3UTR	ENST00000373827	ENST00000519760		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000373827	ENST00000448257		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-intron	ENST00000373827	ENST00000373809		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000355288	ENST00000316629		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000355288	ENST00000395284		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-3UTR	ENST00000355288	ENST00000519760		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000355288	ENST00000448257		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-intron	ENST00000355288	ENST00000373809		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000503366	ENST00000316629		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000503366	ENST00000395284		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-3UTR	ENST00000503366	ENST00000519760		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000503366	ENST00000448257		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
5CDS-intron	ENST00000503366	ENST00000373809		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000510382	ENST00000316629		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000510382	ENST00000395284		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-3UTR	ENST00000510382	ENST00000519760		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000510382	ENST00000448257		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-intron	ENST00000510382	ENST00000373809		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000460468	ENST00000316629		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000460468	ENST00000395284		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-3UTR	ENST00000460468	ENST00000519760		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000460468	ENST00000448257		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
intron-intron	ENST00000460468	ENST00000373809		TCGA	RV	BRCA	TCGA-A2-A0CL-01A	ANK3	chr10	61894029	-	CDK1	chr10	62539899	+
In-frame	ENST00000358602	ENST00000322366		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
In-frame	ENST00000358602	ENST00000295888		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
5CDS-intron	ENST00000358602	ENST00000512267		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
In-frame	ENST00000509867	ENST00000322366		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
In-frame	ENST00000509867	ENST00000295888		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
5CDS-intron	ENST00000509867	ENST00000512267		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
In-frame	ENST00000330838	ENST00000322366		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
In-frame	ENST00000330838	ENST00000295888		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
5CDS-intron	ENST00000330838	ENST00000512267		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
intron-3CDS	ENST00000514252	ENST00000322366		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
intron-3CDS	ENST00000514252	ENST00000295888		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
intron-intron	ENST00000514252	ENST00000512267		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	ANKRD17	chr4	73962834	-	WDFY3	chr4	85630500	-
Frame-shit	ENST00000434513	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000434513	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000434513	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000361221	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000361221	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000361221	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000452522	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000452522	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000452522	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375415	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375415	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000375415	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
intron-3CDS	ENST00000375420	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
intron-3CDS	ENST00000375420	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
intron-intron	ENST00000375420	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
3UTR-3CDS	ENST00000469726	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
3UTR-3CDS	ENST00000469726	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
3UTR-intron	ENST00000469726	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375408	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375408	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000375408	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000167825	ENST00000375453		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000167825	ENST00000375448		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000167825	ENST00000487048		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	ARHGEF10L	chr1	17983203	+	PADI4	chr1	17657464	+
5CDS-5UTR	ENST00000420843	ENST00000336898		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000420843	ENST00000376282		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000420843	ENST00000529095		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000526177		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000533784		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000420843	ENST00000529721		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000533805		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000420843	ENST00000443276		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000336898		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000376282		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000529095		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000526177		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000533784		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000393505	ENST00000529721		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000533805		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000393505	ENST00000443276		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000336898		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000376282		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000529095		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000526177		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000533784		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000360025	ENST00000529721		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000533805		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000360025	ENST00000443276		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	ARRB1	chr11	75062632	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000295598	ENST00000408982		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000295598	ENST00000262477		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000295598	ENST00000537505		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000295598	ENST00000546142		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000295598	ENST00000341923		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000295598	ENST00000570487		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537345	ENST00000408982		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537345	ENST00000262477		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537345	ENST00000537505		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537345	ENST00000546142		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537345	ENST00000341923		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537345	ENST00000570487		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000369496	ENST00000408982		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000369496	ENST00000262477		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000369496	ENST00000537505		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000369496	ENST00000546142		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000369496	ENST00000341923		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000369496	ENST00000570487		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000491156	ENST00000408982		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000491156	ENST00000262477		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000491156	ENST00000537505		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000491156	ENST00000546142		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000491156	ENST00000341923		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000491156	ENST00000570487		TCGA	RV	BRCA	TCGA-AR-A1AM-01A	ATP1A1	chr1	116947394	+	RABEP1	chr17	5283828	+
5CDS-5UTR	ENST00000343307	ENST00000396673		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
5CDS-5UTR	ENST00000343307	ENST00000396672		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
5CDS-5UTR	ENST00000343307	ENST00000315204		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
5CDS-intron	ENST00000343307	ENST00000358872		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
5CDS-intron	ENST00000343307	ENST00000534493		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
5CDS-intron	ENST00000343307	ENST00000473980		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
5CDS-5UTR	ENST00000343307	ENST00000447869		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-5UTR	ENST00000461652	ENST00000396673		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-5UTR	ENST00000461652	ENST00000396672		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-5UTR	ENST00000461652	ENST00000315204		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-intron	ENST00000461652	ENST00000358872		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-intron	ENST00000461652	ENST00000534493		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-intron	ENST00000461652	ENST00000473980		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
intron-5UTR	ENST00000461652	ENST00000447869		TCGA	RV	BRCA	TCGA-AR-A24K-01A	B3GALTL	chr13	31789237	+	STK33	chr11	8496613	-
Frame-shit	ENST00000542334	ENST00000394132		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000394136		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000558613		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000262074		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000558663		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000394135		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000394130		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000542334	ENST00000394129		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000542334	ENST00000490671		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000394132		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000394136		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000558613		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000262074		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000558663		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000394135		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000394130		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000268057	ENST00000394129		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000268057	ENST00000490671		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000394132		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000394136		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000558613		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000262074		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000558663		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000394135		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000394130		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000539603	ENST00000394129		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000539603	ENST00000490671		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000394132		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000394136		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000558613		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000262074		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000558663		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000394135		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000394130		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000395205	ENST00000394129		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000395205	ENST00000490671		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000394132		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000394136		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000558613		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000262074		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000558663		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000394135		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000394130		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000564239	ENST00000394129		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-intron	ENST00000564239	ENST00000490671		TCGA	RV	BRCA	TCGA-B6-A0IO-01A	BBS4	chr15	73024067	+	TTC23	chr15	99762069	-
intron-5UTR	ENST00000546474	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000546474	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000546474	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000546474	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000546474	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000327359	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000327359	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000327359	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000327359	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000327359	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000440513	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000440513	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000440513	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000440513	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000440513	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000392557	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000392557	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000392557	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000392557	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-intron	ENST00000392557	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000379937	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000379937	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000379937	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000379937	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000379937	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000547530	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000547530	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000547530	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000547530	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000547530	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000446501	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000446501	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000446501	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000446501	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000446501	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000379932	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000379932	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000379932	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000379932	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-intron	ENST00000379932	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000551787	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000551787	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000551787	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-5UTR	ENST00000551787	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
5UTR-intron	ENST00000551787	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000549044	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000549044	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000549044	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000549044	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000549044	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000548421	ENST00000345097		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000548421	ENST00000261302		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000548421	ENST00000557258		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-5UTR	ENST00000548421	ENST00000555353		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-intron	ENST00000548421	ENST00000555658		TCGA	RV	BRCA	TCGA-A8-A08I-01A	BRF1	chr14	105713408	-	FOXN3	chr14	89878834	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DB-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000300006	ENST00000261534		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
5CDS-5UTR	ENST00000300006	ENST00000556880		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
Frame-shit	ENST00000566490	ENST00000261534		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
5CDS-5UTR	ENST00000566490	ENST00000556880		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
intron-3CDS	ENST00000452191	ENST00000261534		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
intron-5UTR	ENST00000452191	ENST00000556880		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
intron-3CDS	ENST00000561692	ENST00000261534		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
intron-5UTR	ENST00000561692	ENST00000556880		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
intron-3CDS	ENST00000565913	ENST00000261534		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
intron-5UTR	ENST00000565913	ENST00000556880		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	C16orf45	chr16	15528616	+	POMT2	chr14	77772784	-
5CDS-5UTR	ENST00000334126	ENST00000540342		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000542092		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000349767		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000393592		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000393591		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000540124		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000393590		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000334126	ENST00000538328		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000540342		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000542092		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000349767		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000393592		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000393591		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000540124		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000393590		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000313663	ENST00000538328		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000540342		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000542092		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000349767		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000393592		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000393591		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000540124		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000393590		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000542452	ENST00000538328		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000540342		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000542092		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000349767		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000393592		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000393591		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000540124		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000393590		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000539061	ENST00000538328		TCGA	RV	BRCA	TCGA-E2-A109-01A	C2CD3	chr11	73829273	-	P2RY6	chr11	73007530	+
Frame-shit	ENST00000324068	ENST00000371993		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
In-frame	ENST00000324068	ENST00000356915		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
In-frame	ENST00000324068	ENST00000338081		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
In-frame	ENST00000324068	ENST00000356220		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
Frame-shit	ENST00000324068	ENST00000488120		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
5CDS-intron	ENST00000324068	ENST00000496551		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
Frame-shit	ENST00000541758	ENST00000371993		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
Frame-shit	ENST00000541758	ENST00000356915		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
Frame-shit	ENST00000541758	ENST00000338081		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
Frame-shit	ENST00000541758	ENST00000356220		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
Frame-shit	ENST00000541758	ENST00000488120		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
5CDS-intron	ENST00000541758	ENST00000496551		TCGA	RV	BRCA	TCGA-E2-A14N-01A	CAPN6	chrX	110490596	-	DCX	chrX	110544971	-
5CDS-5UTR	ENST00000264645	ENST00000342944		TCGA	RV	BRCA	TCGA-A2-A1G1-01A	CASC3	chr17	38297860	+	ZNF254	chr19	24309056	+
5CDS-intron	ENST00000264645	ENST00000339642		TCGA	RV	BRCA	TCGA-A2-A1G1-01A	CASC3	chr17	38297860	+	ZNF254	chr19	24309056	+
5CDS-intron	ENST00000264645	ENST00000357002		TCGA	RV	BRCA	TCGA-A2-A1G1-01A	CASC3	chr17	38297860	+	ZNF254	chr19	24309056	+
Frame-shit	ENST00000269141	ENST00000543923		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-5UTR	ENST00000269141	ENST00000435985		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-5UTR	ENST00000269141	ENST00000280020		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-5UTR	ENST00000269141	ENST00000591619		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-5UTR	ENST00000269141	ENST00000586135		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-intron	ENST00000269141	ENST00000592521		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-5UTR	ENST00000269141	ENST00000586501		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
5CDS-intron	ENST00000269141	ENST00000601437		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-3CDS	ENST00000399380	ENST00000543923		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-5UTR	ENST00000399380	ENST00000435985		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-5UTR	ENST00000399380	ENST00000280020		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-5UTR	ENST00000399380	ENST00000591619		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-5UTR	ENST00000399380	ENST00000586135		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-intron	ENST00000399380	ENST00000592521		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-5UTR	ENST00000399380	ENST00000586501		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-intron	ENST00000399380	ENST00000601437		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	CDH2	chr18	25727637	-	KIAA1328	chr18	34646853	+
intron-5UTR	ENST00000359867	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-intron	ENST00000359867	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000359867	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000396832	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-intron	ENST00000396832	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000396832	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
5UTR-5UTR	ENST00000400206	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
5UTR-intron	ENST00000400206	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
5UTR-5UTR	ENST00000400206	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000403904	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-intron	ENST00000403904	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000403904	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000413574	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-intron	ENST00000413574	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000413574	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000405675	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-intron	ENST00000405675	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000405675	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000498529	ENST00000216068		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-intron	ENST00000498529	ENST00000486019		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000498529	ENST00000406199		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CSNK1E	chr22	38776375	-	DNAL4	chr22	39178875	-
5CDS-5UTR	ENST00000409469	ENST00000358647		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	CUL1	chr7	148484212	+	GIMAP5	chr7	150437967	+
5CDS-intron	ENST00000409469	ENST00000479556		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	CUL1	chr7	148484212	+	GIMAP5	chr7	150437967	+
5CDS-5UTR	ENST00000602748	ENST00000358647		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	CUL1	chr7	148484212	+	GIMAP5	chr7	150437967	+
5CDS-intron	ENST00000602748	ENST00000479556		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	CUL1	chr7	148484212	+	GIMAP5	chr7	150437967	+
5CDS-5UTR	ENST00000325222	ENST00000358647		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	CUL1	chr7	148484212	+	GIMAP5	chr7	150437967	+
5CDS-intron	ENST00000325222	ENST00000479556		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	CUL1	chr7	148484212	+	GIMAP5	chr7	150437967	+
In-frame	ENST00000257832	ENST00000241052		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
5CDS-intron	ENST00000257832	ENST00000534710		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
In-frame	ENST00000312319	ENST00000241052		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
5CDS-intron	ENST00000312319	ENST00000534710		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
intron-3CDS	ENST00000429939	ENST00000241052		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
intron-intron	ENST00000429939	ENST00000534710		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
intron-3CDS	ENST00000528709	ENST00000241052		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
intron-intron	ENST00000528709	ENST00000534710		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
intron-3CDS	ENST00000532417	ENST00000241052		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
intron-intron	ENST00000532417	ENST00000534710		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	ELF5	chr11	34515026	-	CAT	chr11	34485652	+
In-frame	ENST00000361924	ENST00000532636		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000361924	ENST00000533540		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000361924	ENST00000453788		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000361924	ENST00000534624		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000361924	ENST00000227378		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-5UTR	ENST00000361924	ENST00000534319		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000361924	ENST00000526110		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000361924	ENST00000526862		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-3CDS	ENST00000435830	ENST00000532636		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-intron	ENST00000435830	ENST00000533540		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-intron	ENST00000435830	ENST00000453788		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-intron	ENST00000435830	ENST00000534624		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-intron	ENST00000435830	ENST00000227378		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-5UTR	ENST00000435830	ENST00000534319		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-intron	ENST00000435830	ENST00000526110		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
intron-intron	ENST00000435830	ENST00000526862		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
In-frame	ENST00000444882	ENST00000532636		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000444882	ENST00000533540		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000444882	ENST00000453788		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000444882	ENST00000534624		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000444882	ENST00000227378		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-5UTR	ENST00000444882	ENST00000534319		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000444882	ENST00000526110		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000444882	ENST00000526862		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
In-frame	ENST00000356847	ENST00000532636		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000356847	ENST00000533540		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000356847	ENST00000453788		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000356847	ENST00000534624		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000356847	ENST00000227378		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-5UTR	ENST00000356847	ENST00000534319		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000356847	ENST00000526110		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
5CDS-intron	ENST00000356847	ENST00000526862		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	GOLGA4	chr3	37292975	+	HSPA8	chr11	122930976	-
Frame-shit	ENST00000251808	ENST00000389327		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
Frame-shit	ENST00000251808	ENST00000389328		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
Frame-shit	ENST00000251808	ENST00000438773		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
5CDS-intron	ENST00000251808	ENST00000522504		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
Frame-shit	ENST00000395927	ENST00000389327		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
Frame-shit	ENST00000395927	ENST00000389328		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
Frame-shit	ENST00000395927	ENST00000438773		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
5CDS-intron	ENST00000395927	ENST00000522504		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
intron-3CDS	ENST00000517674	ENST00000389327		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
intron-3CDS	ENST00000517674	ENST00000389328		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
intron-3CDS	ENST00000517674	ENST00000438773		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
intron-intron	ENST00000517674	ENST00000522504		TCGA	RV	BRCA	TCGA-C8-A12U-01A	GRHL2	chr8	102611379	+	TRAPPC9	chr8	140922544	-
Frame-shit	ENST00000268035	ENST00000311669		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
5CDS-intron	ENST00000268035	ENST00000456471		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
5CDS-intron	ENST00000268035	ENST00000567733		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
Frame-shit	ENST00000558762	ENST00000311669		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
5CDS-intron	ENST00000558762	ENST00000456471		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
5CDS-intron	ENST00000558762	ENST00000567733		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
intron-3CDS	ENST00000560432	ENST00000311669		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
intron-intron	ENST00000560432	ENST00000456471		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
intron-intron	ENST00000560432	ENST00000567733		TCGA	RV	BRCA	TCGA-GM-A2DK-01A	IGF1R	chr15	99251336	+	ADPGK	chr15	73064186	-
In-frame	ENST00000440768	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000440768	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000440768	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000440768	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000440768	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000359197	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000359197	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000359197	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000359197	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000359197	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000343574	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000343574	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000343574	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000343574	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000343574	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000331340	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000331340	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000331340	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000331340	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000331340	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000349824	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000349824	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000349824	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000349824	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000349824	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000357364	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000357364	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000357364	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000357364	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000357364	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000346667	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000346667	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000346667	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000346667	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000346667	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000438033	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000438033	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000438033	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000438033	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000438033	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000439701	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000439701	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000439701	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000439701	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000439701	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000413698	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000413698	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000413698	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-5UTR	ENST00000413698	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
5CDS-intron	ENST00000413698	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
3UTR-3CDS	ENST00000492782	ENST00000535741		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
3UTR-3CDS	ENST00000492782	ENST00000510413		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
3UTR-5UTR	ENST00000492782	ENST00000503716		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
3UTR-5UTR	ENST00000492782	ENST00000357115		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
3UTR-intron	ENST00000492782	ENST00000507224		TCGA	RV	BRCA	TCGA-D8-A27H-01A	IKZF1	chr7	50367353	+	LRBA	chr4	151207186	-
In-frame	ENST00000272117	ENST00000242351		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000272117	ENST00000464606		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000272117	ENST00000471652		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000429204	ENST00000242351		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000429204	ENST00000464606		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000429204	ENST00000471652		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000366784	ENST00000242351		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000366784	ENST00000464606		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
In-frame	ENST00000366784	ENST00000471652		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ITPKB	chr1	226923228	-	ZC3HAV1	chr7	138749745	-
Frame-shit	ENST00000341776	ENST00000283147		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	JARID2	chr6	15410596	+	BMP6	chr6	7879307	+
5UTR-3CDS	ENST00000397311	ENST00000283147		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	JARID2	chr6	15410596	+	BMP6	chr6	7879307	+
Frame-shit	ENST00000541660	ENST00000283147		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	JARID2	chr6	15410596	+	BMP6	chr6	7879307	+
intron-3CDS	ENST00000474854	ENST00000283147		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	JARID2	chr6	15410596	+	BMP6	chr6	7879307	+
Frame-shit	ENST00000293618	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000293618	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-intron	ENST00000293618	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000429001	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000429001	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-intron	ENST00000429001	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000398473	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000398473	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-intron	ENST00000398473	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000518444	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000518444	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-intron	ENST00000518444	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000347328	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000347328	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-intron	ENST00000347328	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000522085	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
Frame-shit	ENST00000522085	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-intron	ENST00000522085	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5UTR-3CDS	ENST00000518561	ENST00000415757		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5UTR-3CDS	ENST00000518561	ENST00000389232		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5UTR-intron	ENST00000518561	ENST00000559917		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	LARP4	chr12	50794811	+	RYR3	chr15	34028436	+
5CDS-5UTR	ENST00000424843	ENST00000395996		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000424843	ENST00000358544		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000424843	ENST00000357162		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000424843	ENST00000355155		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000424843	ENST00000441350		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-intron	ENST00000424843	ENST00000521932		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000276654	ENST00000395996		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000276654	ENST00000358544		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000276654	ENST00000357162		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000276654	ENST00000355155		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000276654	ENST00000441350		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-intron	ENST00000276654	ENST00000521932		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
intron-5UTR	ENST00000518375	ENST00000395996		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
intron-5UTR	ENST00000518375	ENST00000358544		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
intron-5UTR	ENST00000518375	ENST00000357162		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
intron-5UTR	ENST00000518375	ENST00000355155		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
intron-5UTR	ENST00000518375	ENST00000441350		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
intron-intron	ENST00000518375	ENST00000521932		TCGA	RV	BRCA	TCGA-A2-A04Y-01A	LRP12	chr8	105601047	-	VPS13B	chr8	100025988	+
5CDS-5UTR	ENST00000215832	ENST00000303592		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	MAPK1	chr22	22160139	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000398822	ENST00000303592		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	MAPK1	chr22	22160139	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000544786	ENST00000303592		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	MAPK1	chr22	22160139	-	KCNJ4	chr22	38824176	-
intron-5UTR	ENST00000491588	ENST00000303592		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	MAPK1	chr22	22160139	-	KCNJ4	chr22	38824176	-
In-frame	ENST00000399231	ENST00000220514		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	MYO5A	chr15	52689398	-	OIP5	chr15	41611978	-
In-frame	ENST00000356338	ENST00000220514		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	MYO5A	chr15	52689398	-	OIP5	chr15	41611978	-
In-frame	ENST00000358212	ENST00000220514		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	MYO5A	chr15	52689398	-	OIP5	chr15	41611978	-
In-frame	ENST00000399233	ENST00000220514		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	MYO5A	chr15	52689398	-	OIP5	chr15	41611978	-
In-frame	ENST00000553916	ENST00000220514		TCGA	RV	BRCA	TCGA-JL-A3YX-01A	MYO5A	chr15	52689398	-	OIP5	chr15	41611978	-
In-frame	ENST00000396398	ENST00000359486		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
In-frame	ENST00000396398	ENST00000335626		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
In-frame	ENST00000396398	ENST00000404876		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
In-frame	ENST00000403363	ENST00000359486		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
In-frame	ENST00000403363	ENST00000335626		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
In-frame	ENST00000403363	ENST00000404876		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
Frame-shit	ENST00000402937	ENST00000359486		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
Frame-shit	ENST00000402937	ENST00000335626		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
Frame-shit	ENST00000402937	ENST00000404876		TCGA	RV	BRCA	TCGA-BH-A18V-06A	NAGA	chr22	42456928	-	TCF20	chr22	42575708	-
Frame-shit	ENST00000356175	ENST00000393043		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
Frame-shit	ENST00000356175	ENST00000269122		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
Frame-shit	ENST00000356175	ENST00000579456		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
5CDS-intron	ENST00000356175	ENST00000579815		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
Frame-shit	ENST00000358273	ENST00000393043		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
Frame-shit	ENST00000358273	ENST00000269122		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
Frame-shit	ENST00000358273	ENST00000579456		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
5CDS-intron	ENST00000358273	ENST00000579815		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000431387	ENST00000393043		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000431387	ENST00000269122		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000431387	ENST00000579456		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-intron	ENST00000431387	ENST00000579815		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000581113	ENST00000393043		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000581113	ENST00000269122		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000581113	ENST00000579456		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-intron	ENST00000581113	ENST00000579815		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000417592	ENST00000393043		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000417592	ENST00000269122		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000417592	ENST00000579456		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-intron	ENST00000417592	ENST00000579815		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000444181	ENST00000393043		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000444181	ENST00000269122		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-3CDS	ENST00000444181	ENST00000579456		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
intron-intron	ENST00000444181	ENST00000579815		TCGA	RV	BRCA	TCGA-AR-A252-01A	NF1	chr17	29563039	+	CLTC	chr17	57721637	+
Frame-shit	ENST00000287437	ENST00000378289		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000453695		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378246		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000357717		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378278		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000396817		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378254		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378255		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378249		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378258		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000378242		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000287437	ENST00000492201		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
Frame-shit	ENST00000522563	ENST00000378289		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000453695		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378246		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000357717		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378278		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000396817		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378254		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378255		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378249		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378258		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000378242		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000522563	ENST00000492201		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-3CDS	ENST00000517315	ENST00000378289		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000453695		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378246		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000357717		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378278		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000396817		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378254		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378255		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378249		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378258		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000378242		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000517315	ENST00000492201		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-3CDS	ENST00000521460	ENST00000378289		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000453695		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378246		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000357717		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378278		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000396817		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378254		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378255		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378249		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378258		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000378242		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000521460	ENST00000492201		TCGA	RV	BRCA	TCGA-AR-A1AW-01A	NSMCE2	chr8	126114729	+	DCLRE1C	chr10	14941311	-
5CDS-5UTR	ENST00000299468	ENST00000373233		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000299468	ENST00000309279		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000299468	ENST00000373222		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000299468	ENST00000480022		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000369758	ENST00000373233		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000369758	ENST00000309279		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000369758	ENST00000373222		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000369758	ENST00000480022		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000609372	ENST00000373233		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000609372	ENST00000309279		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000609372	ENST00000373222		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000609372	ENST00000480022		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000308824	ENST00000373233		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-5UTR	ENST00000308824	ENST00000309279		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000308824	ENST00000373222		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
5CDS-intron	ENST00000308824	ENST00000480022		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
intron-5UTR	ENST00000266078	ENST00000373233		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
intron-5UTR	ENST00000266078	ENST00000309279		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
intron-intron	ENST00000266078	ENST00000373222		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
intron-intron	ENST00000266078	ENST00000480022		TCGA	RV	BRCA	TCGA-E2-A106-01A	PCMTD2	chr20	62899363	+	CHD6	chr20	40179999	-
intron-intron	ENST00000358994	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000358994	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000358994	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000358994	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000393370	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000393370	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000393370	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000393370	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000337738	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000337738	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000337738	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000337738	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000348141	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000348141	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000348141	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000348141	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000452489	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000452489	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000452489	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000452489	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000357197	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000357197	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000357197	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000357197	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000347048	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000347048	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000347048	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000347048	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000355007	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000355007	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000355007	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000355007	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-intron	ENST00000423100	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-intron	ENST00000423100	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-3UTR	ENST00000423100	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-3UTR	ENST00000423100	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-intron	ENST00000524946	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-intron	ENST00000524946	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-3UTR	ENST00000524946	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5UTR-3UTR	ENST00000524946	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000436883	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000436883	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000436883	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000436883	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000414510	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000414510	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000414510	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000414510	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000432124	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000432124	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000432124	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000432124	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000435305	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000435305	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000435305	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000435305	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000419582	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000419582	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000419582	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000419582	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000432651	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000432651	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000432651	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000432651	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000435132	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000435132	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000435132	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000435132	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000434095	ENST00000474534		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-intron	ENST00000434095	ENST00000358369		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000434095	ENST00000277475		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
intron-3UTR	ENST00000434095	ENST00000406926		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	PPP2R4	chr9	131901928	+	FAM73B	chr9	131831355	+
5CDS-5UTR	ENST00000371941	ENST00000405015		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000371941	ENST00000431489		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000371941	ENST00000354487		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000371941	ENST00000263991		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-intron	ENST00000371941	ENST00000405289		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-intron	ENST00000371941	ENST00000496857		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000396220	ENST00000405015		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000396220	ENST00000431489		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000396220	ENST00000354487		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-5UTR	ENST00000396220	ENST00000263991		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-intron	ENST00000396220	ENST00000405289		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5CDS-intron	ENST00000396220	ENST00000496857		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
intron-5UTR	ENST00000496915	ENST00000405015		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
intron-5UTR	ENST00000496915	ENST00000431489		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
intron-5UTR	ENST00000496915	ENST00000354487		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
intron-5UTR	ENST00000496915	ENST00000263991		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
intron-intron	ENST00000496915	ENST00000405289		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
intron-intron	ENST00000496915	ENST00000496857		TCGA	RV	BRCA	TCGA-AO-A1KS-01A	PREX1	chr20	47444179	-	EHBP1	chr2	62934032	+
5UTR-3CDS	ENST00000393038	ENST00000467460		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000393038	ENST00000263962		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000393038	ENST00000392649		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000393038	ENST00000485199		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000393038	ENST00000468741		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000393038	ENST00000476138		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000393038	ENST00000467440		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000393038	ENST00000472994		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000393038	ENST00000464614		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000393038	ENST00000465751		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000537860	ENST00000467460		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000537860	ENST00000263962		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000537860	ENST00000392649		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000537860	ENST00000485199		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000537860	ENST00000468741		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000537860	ENST00000476138		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000537860	ENST00000467440		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000537860	ENST00000472994		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000537860	ENST00000464614		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000537860	ENST00000465751		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000409433	ENST00000467460		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000409433	ENST00000263962		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000409433	ENST00000392649		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000409433	ENST00000485199		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000409433	ENST00000468741		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000409433	ENST00000476138		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000409433	ENST00000467440		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000409433	ENST00000472994		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000409433	ENST00000464614		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000409433	ENST00000465751		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-3CDS	ENST00000470557	ENST00000467460		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-3CDS	ENST00000470557	ENST00000263962		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-3CDS	ENST00000470557	ENST00000392649		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-3CDS	ENST00000470557	ENST00000485199		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-3CDS	ENST00000470557	ENST00000468741		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-3CDS	ENST00000470557	ENST00000476138		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-5UTR	ENST00000470557	ENST00000467440		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-5UTR	ENST00000470557	ENST00000472994		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-5UTR	ENST00000470557	ENST00000464614		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
intron-5UTR	ENST00000470557	ENST00000465751		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000579915	ENST00000467460		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000579915	ENST00000263962		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000579915	ENST00000392649		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000579915	ENST00000485199		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000579915	ENST00000468741		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-3CDS	ENST00000579915	ENST00000476138		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000579915	ENST00000467440		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000579915	ENST00000472994		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000579915	ENST00000464614		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
5UTR-5UTR	ENST00000579915	ENST00000465751		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PTRH2	chr17	57784732	-	PEX5L	chr3	179576945	-
Frame-shit	ENST00000380456	ENST00000270517		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000380456	ENST00000588998		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000380456	ENST00000252440		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000380456	ENST00000417981		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000380456	ENST00000591104		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000380456	ENST00000592312		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-intron	ENST00000380456	ENST00000591352		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-3CDS	ENST00000568628	ENST00000270517		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-3UTR	ENST00000568628	ENST00000588998		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-3UTR	ENST00000568628	ENST00000252440		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-3UTR	ENST00000568628	ENST00000417981		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-3UTR	ENST00000568628	ENST00000591104		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-3UTR	ENST00000568628	ENST00000592312		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
intron-intron	ENST00000568628	ENST00000591352		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
Frame-shit	ENST00000393423	ENST00000270517		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000393423	ENST00000588998		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000393423	ENST00000252440		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000393423	ENST00000417981		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000393423	ENST00000591104		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-3UTR	ENST00000393423	ENST00000592312		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-intron	ENST00000393423	ENST00000591352		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	RGL3	chr19	11510531	-	ECSIT	chr19	11617243	-
5CDS-intron	ENST00000254260	ENST00000595483		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	RHPN2	chr19	33512477	-	BLVRB	chr19	40957399	-
5CDS-intron	ENST00000254260	ENST00000263368		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	RHPN2	chr19	33512477	-	BLVRB	chr19	40957399	-
intron-intron	ENST00000400226	ENST00000595483		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	RHPN2	chr19	33512477	-	BLVRB	chr19	40957399	-
intron-intron	ENST00000400226	ENST00000263368		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	RHPN2	chr19	33512477	-	BLVRB	chr19	40957399	-
intron-intron	ENST00000588683	ENST00000595483		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	RHPN2	chr19	33512477	-	BLVRB	chr19	40957399	-
intron-intron	ENST00000588683	ENST00000263368		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	RHPN2	chr19	33512477	-	BLVRB	chr19	40957399	-
Frame-shit	ENST00000324685	ENST00000300093		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
5CDS-intron	ENST00000324685	ENST00000564202		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
Frame-shit	ENST00000402121	ENST00000300093		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
5CDS-intron	ENST00000402121	ENST00000564202		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
Frame-shit	ENST00000563683	ENST00000300093		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
5CDS-intron	ENST00000563683	ENST00000564202		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
Frame-shit	ENST00000357890	ENST00000300093		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
5CDS-intron	ENST00000357890	ENST00000564202		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
3UTR-3CDS	ENST00000567365	ENST00000300093		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
3UTR-intron	ENST00000567365	ENST00000564202		TCGA	RV	BRCA	TCGA-AC-A6IV-01A	RNF40	chr16	30783511	+	PLK1	chr16	23698790	+
5CDS-intron	ENST00000529163	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000529163	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000529163	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000529163	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000529163	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000394920	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000394920	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000394920	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000394920	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000394920	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000527914	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000527914	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000527914	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000527914	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000527914	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000262584	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000262584	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000262584	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000262584	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000262584	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000528957	ENST00000322776		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000528957	ENST00000532303		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000528957	ENST00000529927		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000528957	ENST00000415352		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000528957	ENST00000526169		TCGA	RV	BRCA	TCGA-D8-A1XS-01A	RPL8	chr8	146015155	-	NDUFV1	chr11	67375697	+
In-frame	ENST00000374168	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
In-frame	ENST00000374168	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
In-frame	ENST00000374168	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5CDS-intron	ENST00000374168	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
In-frame	ENST00000374166	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
In-frame	ENST00000374166	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
In-frame	ENST00000374166	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5CDS-intron	ENST00000374166	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-3CDS	ENST00000526792	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-3CDS	ENST00000526792	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-3CDS	ENST00000526792	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-intron	ENST00000526792	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-3CDS	ENST00000374162	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-3CDS	ENST00000374162	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-3CDS	ENST00000374162	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
5UTR-intron	ENST00000374162	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000530003	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000530003	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000530003	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-intron	ENST00000530003	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000531382	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000531382	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000531382	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-intron	ENST00000531382	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000488985	ENST00000402538		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000488985	ENST00000403687		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-3CDS	ENST00000488985	ENST00000407811		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
intron-intron	ENST00000488985	ENST00000482731		TCGA	RV	BRCA	TCGA-E2-A106-01A	RPS6KA1	chr1	26863460	+	RASGRP3	chr2	33759390	+
Frame-shit	ENST00000280551	ENST00000394635		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000280551	ENST00000394634		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000280551	ENST00000512148		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000280551	ENST00000510800		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000379735	ENST00000394635		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000379735	ENST00000394634		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000379735	ENST00000512148		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000379735	ENST00000510800		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000429811	ENST00000394635		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000429811	ENST00000394634		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000429811	ENST00000512148		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000429811	ENST00000510800		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000505134	ENST00000394635		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000505134	ENST00000394634		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000505134	ENST00000512148		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000505134	ENST00000510800		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000511481	ENST00000394635		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000511481	ENST00000394634		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000511481	ENST00000512148		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
intron-3CDS	ENST00000511481	ENST00000510800		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
5UTR-3CDS	ENST00000419654	ENST00000394635		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
5UTR-3CDS	ENST00000419654	ENST00000394634		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
5UTR-3CDS	ENST00000419654	ENST00000512148		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
5UTR-3CDS	ENST00000419654	ENST00000510800		TCGA	RV	BRCA	TCGA-A2-A3XZ-01A	SEC24D	chr4	119718838	-	CFI	chr4	110687980	-
Frame-shit	ENST00000342228	ENST00000336926		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
Frame-shit	ENST00000342228	ENST00000434438		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
5CDS-intron	ENST00000342228	ENST00000479835		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
Frame-shit	ENST00000520262	ENST00000336926		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
Frame-shit	ENST00000520262	ENST00000434438		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
5CDS-intron	ENST00000520262	ENST00000479835		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
Frame-shit	ENST00000520179	ENST00000336926		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
Frame-shit	ENST00000520179	ENST00000434438		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
5CDS-intron	ENST00000520179	ENST00000479835		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
intron-3CDS	ENST00000523340	ENST00000336926		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
intron-3CDS	ENST00000523340	ENST00000434438		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
intron-intron	ENST00000523340	ENST00000479835		TCGA	RV	BRCA	TCGA-A8-A08P-01A	SLC20A2	chr8	42286276	-	HIP1	chr7	75172293	-
In-frame	ENST00000294168	ENST00000227525		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	TAF6L	chr11	62550297	+	TMEM109	chr11	60688358	+
In-frame	ENST00000294168	ENST00000536171		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	TAF6L	chr11	62550297	+	TMEM109	chr11	60688358	+
5CDS-intron	ENST00000294168	ENST00000540280		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	TAF6L	chr11	62550297	+	TMEM109	chr11	60688358	+
Frame-shit	ENST00000355947	ENST00000453269		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000355947	ENST00000472509		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000355947	ENST00000452041		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000355947	ENST00000344095		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000355947	ENST00000418432		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000355947	ENST00000437822		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
5CDS-intron	ENST00000355947	ENST00000497233		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000349062	ENST00000453269		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000349062	ENST00000472509		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000349062	ENST00000452041		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000349062	ENST00000344095		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000349062	ENST00000418432		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000349062	ENST00000437822		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
5CDS-intron	ENST00000349062	ENST00000497233		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000354241	ENST00000453269		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000354241	ENST00000472509		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000354241	ENST00000452041		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000354241	ENST00000344095		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000354241	ENST00000418432		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
Frame-shit	ENST00000354241	ENST00000437822		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
5CDS-intron	ENST00000354241	ENST00000497233		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	TRIM4	chr7	99500841	-	TAF6	chr7	99707696	-
In-frame	ENST00000294119	ENST00000405837		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000294119	ENST00000433053		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000294119	ENST00000278893		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000294119	ENST00000360796		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000294119	ENST00000403550		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000294119	ENST00000407022		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000294119	ENST00000421906		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000294119	ENST00000537604		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000405837		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000433053		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000278893		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000360796		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000403550		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000407022		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000301935	ENST00000421906		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000301935	ENST00000537604		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000405837		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000433053		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000278893		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000360796		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000403550		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000407022		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000533000	ENST00000421906		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000533000	ENST00000537604		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000405837		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000433053		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000278893		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000360796		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000403550		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000407022		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
In-frame	ENST00000529640	ENST00000421906		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5CDS-intron	ENST00000529640	ENST00000537604		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000405837		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000433053		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000278893		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000360796		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000403550		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000407022		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-3CDS	ENST00000524762	ENST00000421906		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5UTR-intron	ENST00000524762	ENST00000537604		TCGA	RV	BRCA	TCGA-AO-A129-01A	UBXN1	chr11	62444990	-	BSCL2	chr11	62460269	-
5CDS-5UTR	ENST00000419098	ENST00000485760		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000371236		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000371234		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000420954		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000439789		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000414851		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000371231		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000419098	ENST00000371230		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	ZNF732	chr4	289227	-	DAB1	chr1	57611102	-
In-frame	ENST00000539909	ENST00000404771		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000372440		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000372443		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000286628		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000286627		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000354353		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000404857		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000539909	ENST00000406533		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000539909	ENST00000484507		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000539909	ENST00000481070		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000539909	ENST00000480683		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000404771		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000372440		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000372443		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000286628		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000286627		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000354353		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000404857		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000286621	ENST00000406533		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000286621	ENST00000484507		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000286621	ENST00000481070		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000286621	ENST00000480683		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000404771		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000372440		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000372443		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000286628		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000286627		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000354353		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000404857		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000372734	ENST00000406533		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000372734	ENST00000484507		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000372734	ENST00000481070		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000372734	ENST00000480683		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000404771		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000372440		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000372443		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000286628		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000286627		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000354353		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000404857		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000541550	ENST00000406533		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000541550	ENST00000484507		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000541550	ENST00000481070		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000541550	ENST00000480683		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000404771		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000372440		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000372443		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000286628		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000286627		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000354353		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000404857		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000467840	ENST00000406533		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-intron	ENST00000467840	ENST00000484507		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-intron	ENST00000467840	ENST00000481070		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
intron-intron	ENST00000467840	ENST00000480683		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	ADK	chr10	76074503	+	KCNMA1	chr10	79011014	-
In-frame	ENST00000360265	ENST00000361737		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000360265	ENST00000545242		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000360265	ENST00000546334		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000360265	ENST00000296372		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-5UTR	ENST00000360265	ENST00000318888		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000514025		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000447017		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000361581		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000341937		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000407564		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000505872		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000428004		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000360265	ENST00000515079		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000358461	ENST00000361737		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000358461	ENST00000545242		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000358461	ENST00000546334		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000358461	ENST00000296372		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-5UTR	ENST00000358461	ENST00000318888		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000514025		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000447017		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000361581		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000341937		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000407564		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000505872		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000428004		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000358461	ENST00000515079		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000420658	ENST00000361737		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000420658	ENST00000545242		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000420658	ENST00000546334		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000420658	ENST00000296372		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-5UTR	ENST00000420658	ENST00000318888		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000514025		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000447017		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000361581		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000341937		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000407564		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000505872		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000428004		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000420658	ENST00000515079		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000382543	ENST00000361737		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000382543	ENST00000545242		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000382543	ENST00000546334		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
In-frame	ENST00000382543	ENST00000296372		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-5UTR	ENST00000382543	ENST00000318888		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000514025		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000447017		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000361581		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000341937		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000407564		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000505872		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000428004		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5CDS-intron	ENST00000382543	ENST00000515079		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-3CDS	ENST00000513842	ENST00000361737		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-3CDS	ENST00000513842	ENST00000545242		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-3CDS	ENST00000513842	ENST00000546334		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-3CDS	ENST00000513842	ENST00000296372		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-5UTR	ENST00000513842	ENST00000318888		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000514025		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000447017		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000361581		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000341937		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000407564		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000505872		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000428004		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
intron-intron	ENST00000513842	ENST00000515079		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	AFAP1	chr4	7857193	-	ABLIM2	chr4	8099009	-
5UTR-3CDS	ENST00000337714	ENST00000351904		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-3CDS	ENST00000337714	ENST00000245541		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000337714	ENST00000578348		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000337714	ENST00000582486		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-intron	ENST00000337714	ENST00000538886		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000337714	ENST00000582717		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000337714	ENST00000537686		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000337714	ENST00000579743		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-3CDS	ENST00000314126	ENST00000351904		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-3CDS	ENST00000314126	ENST00000245541		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000314126	ENST00000578348		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000314126	ENST00000582486		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-intron	ENST00000314126	ENST00000538886		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000314126	ENST00000582717		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000314126	ENST00000537686		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000314126	ENST00000579743		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-3CDS	ENST00000571629	ENST00000351904		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-3CDS	ENST00000571629	ENST00000245541		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000571629	ENST00000578348		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000571629	ENST00000582486		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-intron	ENST00000571629	ENST00000538886		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000571629	ENST00000582717		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000571629	ENST00000537686		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000571629	ENST00000579743		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-3CDS	ENST00000572557	ENST00000351904		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-3CDS	ENST00000572557	ENST00000245541		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000572557	ENST00000578348		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000572557	ENST00000582486		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-intron	ENST00000572557	ENST00000538886		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000572557	ENST00000582717		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000572557	ENST00000537686		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000572557	ENST00000579743		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-3CDS	ENST00000539273	ENST00000351904		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-3CDS	ENST00000539273	ENST00000245541		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000539273	ENST00000578348		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000539273	ENST00000582486		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-intron	ENST00000539273	ENST00000538886		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000539273	ENST00000582717		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000539273	ENST00000537686		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
intron-5UTR	ENST00000539273	ENST00000579743		TCGA	RV	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55162759	+	GGA3	chr17	73242877	-
In-frame	ENST00000338458	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5CDS-intron	ENST00000338458	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5CDS-intron	ENST00000338458	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
In-frame	ENST00000496106	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5CDS-intron	ENST00000496106	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5CDS-intron	ENST00000496106	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5UTR-3CDS	ENST00000498517	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5UTR-intron	ENST00000498517	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
5UTR-intron	ENST00000498517	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-3CDS	ENST00000296315	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000296315	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000296315	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-3CDS	ENST00000413728	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000413728	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000413728	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-3CDS	ENST00000497267	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000497267	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000497267	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-3CDS	ENST00000495373	ENST00000369238		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000495373	ENST00000460583		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
intron-intron	ENST00000495373	ENST00000392988		TCGA	RV	BRCA	TCGA-AO-A0J6-01A	ARHGEF3	chr3	56916320	-	ACP6	chr1	147131890	-
Frame-shit	ENST00000295598	ENST00000256646		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000295598	ENST00000602566		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000295598	ENST00000493703		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
Frame-shit	ENST00000537345	ENST00000256646		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000537345	ENST00000602566		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000537345	ENST00000493703		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
Frame-shit	ENST00000369496	ENST00000256646		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000369496	ENST00000602566		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000369496	ENST00000493703		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000491156	ENST00000256646		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
intron-intron	ENST00000491156	ENST00000602566		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000491156	ENST00000493703		TCGA	RV	BRCA	TCGA-A2-A0ST-01A	ATP1A1	chr1	116926746	+	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000395914	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395914	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000395914	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395909	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395909	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000395909	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000371356	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000371356	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000371356	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000347343	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000347343	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000347343	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395911	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395911	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000395911	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000312783	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000312783	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000312783	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395915	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395915	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000395915	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395913	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395913	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000395913	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395907	ENST00000319441		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000395907	ENST00000543666		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000395907	ENST00000535860		TCGA	RV	BRCA	TCGA-AR-A24R-01A	AURKA	chr20	54963212	-	PCK1	chr20	56136428	+
Frame-shit	ENST00000535206	ENST00000379540		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
Frame-shit	ENST00000535206	ENST00000379521		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
5CDS-intron	ENST00000535206	ENST00000318524		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
5CDS-intron	ENST00000535206	ENST00000463421		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
Frame-shit	ENST00000379731	ENST00000379540		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
Frame-shit	ENST00000379731	ENST00000379521		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
5CDS-intron	ENST00000379731	ENST00000318524		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
5CDS-intron	ENST00000379731	ENST00000463421		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
intron-3CDS	ENST00000541851	ENST00000379540		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
intron-3CDS	ENST00000541851	ENST00000379521		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
intron-intron	ENST00000541851	ENST00000318524		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
intron-intron	ENST00000541851	ENST00000463421		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	B4GALT1	chr9	33135187	-	NFX1	chr9	33354084	+
In-frame	ENST00000029410	ENST00000354179		TCGA	RV	BRCA	TCGA-AO-A12F-01A	B4GALT7	chr5	177035623	+	NSD1	chr5	176618885	+
In-frame	ENST00000029410	ENST00000439151		TCGA	RV	BRCA	TCGA-AO-A12F-01A	B4GALT7	chr5	177035623	+	NSD1	chr5	176618885	+
In-frame	ENST00000029410	ENST00000347982		TCGA	RV	BRCA	TCGA-AO-A12F-01A	B4GALT7	chr5	177035623	+	NSD1	chr5	176618885	+
5CDS-intron	ENST00000029410	ENST00000361032		TCGA	RV	BRCA	TCGA-AO-A12F-01A	B4GALT7	chr5	177035623	+	NSD1	chr5	176618885	+
5CDS-intron	ENST00000029410	ENST00000511258		TCGA	RV	BRCA	TCGA-AO-A12F-01A	B4GALT7	chr5	177035623	+	NSD1	chr5	176618885	+
In-frame	ENST00000224337	ENST00000339364		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000224337	ENST00000468783		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000224337	ENST00000371110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000224337	ENST00000371109		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
In-frame	ENST00000371176	ENST00000339364		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000371176	ENST00000468783		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000371176	ENST00000371110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000371176	ENST00000371109		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
In-frame	ENST00000427367	ENST00000339364		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000427367	ENST00000468783		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000427367	ENST00000371110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000427367	ENST00000371109		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
In-frame	ENST00000413476	ENST00000339364		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000413476	ENST00000468783		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000413476	ENST00000371110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-5UTR	ENST00000413476	ENST00000371109		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
intron-3CDS	ENST00000495266	ENST00000339364		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
intron-5UTR	ENST00000495266	ENST00000468783		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
intron-5UTR	ENST00000495266	ENST00000371110		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
intron-5UTR	ENST00000495266	ENST00000371109		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	BLNK	chr10	97976409	-	PIK3AP1	chr10	98388250	-
5CDS-intron	ENST00000394303	ENST00000378137		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000394303	ENST00000325718		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000394303	ENST00000579179		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000394310	ENST00000378137		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000394310	ENST00000325718		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000394310	ENST00000579179		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000344140	ENST00000378137		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000344140	ENST00000325718		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
5CDS-intron	ENST00000344140	ENST00000579179		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
intron-intron	ENST00000582877	ENST00000378137		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
intron-intron	ENST00000582877	ENST00000325718		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
intron-intron	ENST00000582877	ENST00000579179		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	CACNB1	chr17	37339966	-	MLLT6	chr17	36878931	+
Frame-shit	ENST00000520753	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000520753	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520753	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520753	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000521613	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000521613	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000521613	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000521613	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000519940	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000519940	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000519940	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000519940	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000519332	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000519332	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000519332	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000519332	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000520007	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
Frame-shit	ENST00000520007	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520007	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520007	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
intron-3CDS	ENST00000600800	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
intron-3CDS	ENST00000600800	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
intron-intron	ENST00000600800	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
intron-intron	ENST00000600800	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-3CDS	ENST00000357778	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-3CDS	ENST00000357778	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-intron	ENST00000357778	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-intron	ENST00000357778	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000391898	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000391898	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000391898	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000391898	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-3CDS	ENST00000359009	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-3CDS	ENST00000359009	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-intron	ENST00000359009	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-intron	ENST00000359009	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000447740	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000447740	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000447740	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000447740	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000520153	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000520153	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520153	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520153	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000520015	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000520015	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520015	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000520015	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000522431	ENST00000595085		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
In-frame	ENST00000522431	ENST00000269980		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000522431	ENST00000457836		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000522431	ENST00000535632		TCGA	RV	BRCA	TCGA-A8-A097-01A	CARD8	chr19	48744219	-	BCKDHA	chr19	41916542	+
5UTR-3CDS	ENST00000338252	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000338252	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000338252	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000338252	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-5UTR	ENST00000338252	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508830	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508830	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508830	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508830	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000508830	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000359176	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000359176	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000359176	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000359176	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000359176	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395812	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395812	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395812	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395812	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000395812	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000325674	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000325674	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000325674	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000325674	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000325674	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395813	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395813	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395813	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000395813	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000395813	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000510756	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000510756	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000510756	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000510756	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000510756	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508608	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508608	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508608	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000508608	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5CDS-5UTR	ENST00000508608	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000341926	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000341926	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000341926	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-3CDS	ENST00000341926	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
5UTR-5UTR	ENST00000341926	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511049	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511049	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511049	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511049	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000511049	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000309190	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000309190	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000309190	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000309190	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000309190	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000509903	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000509903	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000509903	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000509903	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000509903	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511782	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511782	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511782	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000511782	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000511782	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000504465	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000504465	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000504465	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000504465	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000504465	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000348386	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000348386	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000348386	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000348386	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000348386	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000508579	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000508579	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000508579	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000508579	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000508579	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000515663	ENST00000395965		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000515663	ENST00000505869		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000515663	ENST00000509739		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-3CDS	ENST00000515663	ENST00000509163		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
intron-5UTR	ENST00000515663	ENST00000504768		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	CAST	chr5	96031611	+	FAM172A	chr5	93300228	-
In-frame	ENST00000371477	ENST00000323108		TCGA	RV	BRCA	TCGA-C8-A12L-01A	CDC5L	chr6	44387334	+	SPATS1	chr6	44344095	+
In-frame	ENST00000371477	ENST00000288390		TCGA	RV	BRCA	TCGA-C8-A12L-01A	CDC5L	chr6	44387334	+	SPATS1	chr6	44344095	+
Frame-shit	ENST00000262738	ENST00000216264		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
Frame-shit	ENST00000262738	ENST00000541677		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
5CDS-intron	ENST00000262738	ENST00000471929		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
Frame-shit	ENST00000395964	ENST00000216264		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
Frame-shit	ENST00000395964	ENST00000541677		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
5CDS-intron	ENST00000395964	ENST00000471929		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
5UTR-3CDS	ENST00000497509	ENST00000216264		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
5UTR-3CDS	ENST00000497509	ENST00000541677		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
5UTR-intron	ENST00000497509	ENST00000471929		TCGA	RV	BRCA	TCGA-E2-A14P-01A	CELSR1	chr22	46929524	-	CERK	chr22	47083103	-
In-frame	ENST00000229195	ENST00000355086		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
In-frame	ENST00000229195	ENST00000357825		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000229195	ENST00000543397		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
In-frame	ENST00000418359	ENST00000355086		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
In-frame	ENST00000418359	ENST00000357825		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000418359	ENST00000543397		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000548230	ENST00000355086		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000548230	ENST00000357825		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000548230	ENST00000543397		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000551483	ENST00000355086		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000551483	ENST00000357825		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000551483	ENST00000543397		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	CNOT2	chr12	70713144	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000443824	ENST00000380087		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000443824	ENST00000380084		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000443824	ENST00000404022		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000359276	ENST00000380087		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000359276	ENST00000380084		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000359276	ENST00000404022		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000380241	ENST00000380087		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000380241	ENST00000380084		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
Frame-shit	ENST00000380241	ENST00000404022		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
intron-3CDS	ENST00000483053	ENST00000380087		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
intron-3CDS	ENST00000483053	ENST00000380084		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
intron-3CDS	ENST00000483053	ENST00000404022		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	CTPS2	chrX	16685637	-	RBBP7	chrX	16867424	-
5CDS-5UTR	ENST00000341516	ENST00000553116		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000341516	ENST00000360299		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000341516	ENST00000448789		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000554215	ENST00000553116		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000554215	ENST00000360299		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000554215	ENST00000448789		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000556847	ENST00000553116		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000556847	ENST00000360299		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000556847	ENST00000448789		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000557386	ENST00000553116		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000557386	ENST00000360299		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000557386	ENST00000448789		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000389997	ENST00000553116		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000389997	ENST00000360299		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
5CDS-5UTR	ENST00000389997	ENST00000448789		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000553293	ENST00000553116		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000553293	ENST00000360299		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
intron-5UTR	ENST00000553293	ENST00000448789		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	RAB5B	chr12	56380653	+
In-frame	ENST00000543086	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000543086	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000546231	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000546231	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000397203	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000397203	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000360905	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000360905	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000589028	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000589028	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000355446	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000355446	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000536573	ENST00000355710		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000536573	ENST00000340058		TCGA	RV	BRCA	TCGA-C8-A1HJ-01A	ERC1	chr12	1250953	+	RET	chr10	43612032	+
In-frame	ENST00000543086	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
In-frame	ENST00000546231	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
In-frame	ENST00000397203	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
In-frame	ENST00000360905	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
In-frame	ENST00000589028	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
In-frame	ENST00000355446	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
3UTR-3CDS	ENST00000536573	ENST00000313288		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	ERC1	chr12	1192746	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000366847	ENST00000316316		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
5CDS-5UTR	ENST00000366847	ENST00000505485		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
5CDS-intron	ENST00000366847	ENST00000316068		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
Frame-shit	ENST00000349556	ENST00000316316		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
5CDS-5UTR	ENST00000349556	ENST00000505485		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
5CDS-intron	ENST00000349556	ENST00000316068		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
intron-3CDS	ENST00000476078	ENST00000316316		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
intron-5UTR	ENST00000476078	ENST00000505485		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
intron-intron	ENST00000476078	ENST00000316068		TCGA	RV	BRCA	TCGA-A8-A06R-01A	FGFR1OP	chr6	167440103	+	MCM9	chr6	119150413	-
In-frame	ENST00000335255	ENST00000392676		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
In-frame	ENST00000335255	ENST00000392677		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
In-frame	ENST00000335255	ENST00000588877		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
5CDS-intron	ENST00000335255	ENST00000589609		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
intron-3CDS	ENST00000529652	ENST00000392676		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
intron-3CDS	ENST00000529652	ENST00000392677		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
intron-3CDS	ENST00000529652	ENST00000588877		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
intron-intron	ENST00000529652	ENST00000589609		TCGA	RV	BRCA	TCGA-D8-A27N-01A	FOXK2	chr17	80542064	+	ABCA5	chr17	67273983	-
5CDS-3UTR	ENST00000351904	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000351904	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-3UTR	ENST00000245541	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000245541	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-3UTR	ENST00000578348	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000578348	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-3UTR	ENST00000582486	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582486	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-3UTR	ENST00000538886	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000538886	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-3UTR	ENST00000582717	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
5CDS-intron	ENST00000582717	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-3UTR	ENST00000537686	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000537686	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-3UTR	ENST00000579743	ENST00000548446		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000420353		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000415113		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000456903		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000548118		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000591397		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000328463		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
intron-intron	ENST00000579743	ENST00000546661		TCGA	RV	BRCA	TCGA-GM-A2DL-01A	GGA3	chr17	73235870	-	ATF7	chr12	53901811	-
In-frame	ENST00000286548	ENST00000376344		TCGA	RV	BRCA	TCGA-E2-A159-01A	GNAQ	chr9	80409379	-	C9orf64	chr9	86559904	-
In-frame	ENST00000286548	ENST00000314700		TCGA	RV	BRCA	TCGA-E2-A159-01A	GNAQ	chr9	80409379	-	C9orf64	chr9	86559904	-
5CDS-intron	ENST00000286548	ENST00000376340		TCGA	RV	BRCA	TCGA-E2-A159-01A	GNAQ	chr9	80409379	-	C9orf64	chr9	86559904	-
In-frame	ENST00000397476	ENST00000376344		TCGA	RV	BRCA	TCGA-E2-A159-01A	GNAQ	chr9	80409379	-	C9orf64	chr9	86559904	-
In-frame	ENST00000397476	ENST00000314700		TCGA	RV	BRCA	TCGA-E2-A159-01A	GNAQ	chr9	80409379	-	C9orf64	chr9	86559904	-
5CDS-intron	ENST00000397476	ENST00000376340		TCGA	RV	BRCA	TCGA-E2-A159-01A	GNAQ	chr9	80409379	-	C9orf64	chr9	86559904	-
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	BRCA	TCGA-A8-A06X-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	BRCA	TCGA-A8-A06X-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000367265	ENST00000367689		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
Frame-shit	ENST00000367265	ENST00000357444		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
Frame-shit	ENST00000367265	ENST00000251507		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000325589		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000367686		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000367687		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000347255		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000489615		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000478442		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000486220		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000392064		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367265	ENST00000367688		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
Frame-shit	ENST00000367264	ENST00000367689		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
Frame-shit	ENST00000367264	ENST00000357444		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
Frame-shit	ENST00000367264	ENST00000251507		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000325589		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000367686		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000367687		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000347255		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000489615		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000478442		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000486220		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000392064		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
5CDS-intron	ENST00000367264	ENST00000367688		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-3CDS	ENST00000456180	ENST00000367689		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-3CDS	ENST00000456180	ENST00000357444		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-3CDS	ENST00000456180	ENST00000251507		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000325589		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000367686		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000367687		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000347255		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000489615		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000478442		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000486220		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000392064		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
intron-intron	ENST00000456180	ENST00000367688		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	KDM5B	chr1	202742246	-	RABGAP1L	chr1	174340117	+
In-frame	ENST00000392272	ENST00000294435		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	KIRREL	chr1	157963518	+	RBP7	chr1	10075840	+
In-frame	ENST00000368173	ENST00000294435		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	KIRREL	chr1	157963518	+	RBP7	chr1	10075840	+
5UTR-3CDS	ENST00000360089	ENST00000294435		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	KIRREL	chr1	157963518	+	RBP7	chr1	10075840	+
In-frame	ENST00000359209	ENST00000294435		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	KIRREL	chr1	157963518	+	RBP7	chr1	10075840	+
In-frame	ENST00000416935	ENST00000294435		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	KIRREL	chr1	157963518	+	RBP7	chr1	10075840	+
intron-3CDS	ENST00000368172	ENST00000294435		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	KIRREL	chr1	157963518	+	RBP7	chr1	10075840	+
Frame-shit	ENST00000524717	ENST00000527185		TCGA	RV	BRCA	TCGA-D8-A27H-01A	MAML2	chr11	95825056	-	CNTN5	chr11	99715584	+
Frame-shit	ENST00000524717	ENST00000528682		TCGA	RV	BRCA	TCGA-D8-A27H-01A	MAML2	chr11	95825056	-	CNTN5	chr11	99715584	+
Frame-shit	ENST00000524717	ENST00000524871		TCGA	RV	BRCA	TCGA-D8-A27H-01A	MAML2	chr11	95825056	-	CNTN5	chr11	99715584	+
Frame-shit	ENST00000524717	ENST00000418526		TCGA	RV	BRCA	TCGA-D8-A27H-01A	MAML2	chr11	95825056	-	CNTN5	chr11	99715584	+
Frame-shit	ENST00000524717	ENST00000279463		TCGA	RV	BRCA	TCGA-D8-A27H-01A	MAML2	chr11	95825056	-	CNTN5	chr11	99715584	+
5CDS-intron	ENST00000524717	ENST00000524560		TCGA	RV	BRCA	TCGA-D8-A27H-01A	MAML2	chr11	95825056	-	CNTN5	chr11	99715584	+
Frame-shit	ENST00000353533	ENST00000392795		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
Frame-shit	ENST00000353533	ENST00000006750		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
Frame-shit	ENST00000353533	ENST00000349817		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
Frame-shit	ENST00000415385	ENST00000392795		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
Frame-shit	ENST00000415385	ENST00000006750		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
Frame-shit	ENST00000415385	ENST00000349817		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
intron-3CDS	ENST00000581941	ENST00000392795		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
intron-3CDS	ENST00000581941	ENST00000006750		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
intron-3CDS	ENST00000581941	ENST00000349817		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MAP2K4	chr17	11958308	+	CD79B	chr17	62008745	-
intron-intron	ENST00000509990	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000509990	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000509990	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000509990	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000509990	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000361059	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000361059	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000361059	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000361059	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000361059	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000504203	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000504203	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000504203	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000504203	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000504203	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502929	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502929	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502929	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502929	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502929	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394800	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394800	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394800	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394800	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394800	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
3UTR-intron	ENST00000507197	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
3UTR-intron	ENST00000507197	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
3UTR-intron	ENST00000507197	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
3UTR-intron	ENST00000507197	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
3UTR-intron	ENST00000507197	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394805	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394805	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394805	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394805	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000394805	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502499	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502499	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502499	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502499	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000502499	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000510056	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000510056	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000510056	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000510056	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000510056	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000503811	ENST00000355078		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000503811	ENST00000302763		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000503811	ENST00000518825		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000503811	ENST00000520400		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
intron-intron	ENST00000503811	ENST00000540387		TCGA	RV	BRCA	TCGA-A8-A08B-01A	MATR3	chr5	138615747	+	CTNNA1	chr5	137988753	+
5CDS-5UTR	ENST00000216122	ENST00000447733		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000216122	ENST00000449058		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000216122	ENST00000425375		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000216122	ENST00000411850		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000216122	ENST00000436462		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000216122	ENST00000382034		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000382011	ENST00000447733		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000382011	ENST00000449058		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000382011	ENST00000425375		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000382011	ENST00000411850		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000382011	ENST00000436462		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000382011	ENST00000382034		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-5UTR	ENST00000465557	ENST00000447733		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-5UTR	ENST00000465557	ENST00000449058		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-5UTR	ENST00000465557	ENST00000425375		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-5UTR	ENST00000465557	ENST00000411850		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-5UTR	ENST00000465557	ENST00000436462		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-5UTR	ENST00000465557	ENST00000382034		TCGA	RV	BRCA	TCGA-D8-A1XQ-01A	MCM5	chr22	35817453	+	TOM1	chr22	35713870	+
intron-3CDS	ENST00000380934	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
intron-3CDS	ENST00000380934	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000380959	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000380959	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000380953	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000380953	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000397575	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000397575	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000397581	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000397581	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000397579	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000397579	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
intron-3CDS	ENST00000543693	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
intron-3CDS	ENST00000543693	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
intron-3CDS	ENST00000380924	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
intron-3CDS	ENST00000380924	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000380921	ENST00000263918		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
In-frame	ENST00000380921	ENST00000379213		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	STRN	chr2	37152351	-
intron-3CDS	ENST00000448838	ENST00000377967		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000448838	ENST00000382899		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000448838	ENST00000536777		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000448838	ENST00000543216		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3UTR	ENST00000448838	ENST00000479423		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000227868	ENST00000377967		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000227868	ENST00000382899		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000227868	ENST00000536777		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000227868	ENST00000543216		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
5CDS-3UTR	ENST00000227868	ENST00000479423		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000430469	ENST00000377967		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000430469	ENST00000382899		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000430469	ENST00000536777		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
Frame-shit	ENST00000430469	ENST00000543216		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
5CDS-3UTR	ENST00000430469	ENST00000479423		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000477173	ENST00000377967		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000477173	ENST00000382899		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000477173	ENST00000536777		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000477173	ENST00000543216		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
intron-3UTR	ENST00000477173	ENST00000479423		TCGA	RV	BRCA	TCGA-BH-A0BF-01A	PDHX	chr11	34938362	+	KDM6A	chrX	44966655	+
In-frame	ENST00000358506	ENST00000327757		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
In-frame	ENST00000358506	ENST00000422425		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5CDS-intron	ENST00000358506	ENST00000541605		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5CDS-intron	ENST00000358506	ENST00000329020		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
In-frame	ENST00000296122	ENST00000327757		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
In-frame	ENST00000296122	ENST00000422425		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5CDS-intron	ENST00000296122	ENST00000541605		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5CDS-intron	ENST00000296122	ENST00000329020		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
In-frame	ENST00000395366	ENST00000327757		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
In-frame	ENST00000395366	ENST00000422425		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5CDS-intron	ENST00000395366	ENST00000541605		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5CDS-intron	ENST00000395366	ENST00000329020		TCGA	RV	BRCA	TCGA-E9-A243-01A	PPP1CB	chr2	28975042	+	PLB1	chr2	28785908	+
5UTR-3UTR	ENST00000292539	ENST00000526231		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
5UTR-3UTR	ENST00000292539	ENST00000308860		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
5UTR-3UTR	ENST00000292539	ENST00000532190		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
3UTR-3UTR	ENST00000529009	ENST00000526231		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
3UTR-3UTR	ENST00000529009	ENST00000308860		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
3UTR-3UTR	ENST00000529009	ENST00000532190		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
intron-3UTR	ENST00000435887	ENST00000526231		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
intron-3UTR	ENST00000435887	ENST00000308860		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
intron-3UTR	ENST00000435887	ENST00000532190		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	PPP1R16A	chr8	145715595	+	ADCK5	chr8	145615871	+
5CDS-intron	ENST00000449359	ENST00000575270		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000449359	ENST00000349223		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000449359	ENST00000329524		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000449359	ENST00000346183		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000449359	ENST00000535127		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
intron-intron	ENST00000564441	ENST00000575270		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
intron-intron	ENST00000564441	ENST00000349223		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
intron-3UTR	ENST00000564441	ENST00000329524		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
intron-3UTR	ENST00000564441	ENST00000346183		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
intron-3UTR	ENST00000564441	ENST00000535127		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000441236	ENST00000575270		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000441236	ENST00000349223		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000441236	ENST00000329524		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000441236	ENST00000346183		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000441236	ENST00000535127		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000348497	ENST00000575270		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000348497	ENST00000349223		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000348497	ENST00000329524		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000348497	ENST00000346183		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000348497	ENST00000535127		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000339507	ENST00000575270		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000339507	ENST00000349223		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000339507	ENST00000329524		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000339507	ENST00000346183		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000339507	ENST00000535127		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PRMT7	chr16	68389786	+	NFATC3	chr16	68260253	+
intron-3CDS	ENST00000413953	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000413953	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
5UTR-3CDS	ENST00000347140	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
5UTR-3CDS	ENST00000347140	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000358907	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000358907	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
5UTR-3CDS	ENST00000402412	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
5UTR-3CDS	ENST00000402412	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000441731	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000441731	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000403821	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000403821	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000546843	ENST00000314616		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
intron-3CDS	ENST00000546843	ENST00000347486		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	R3HDM2	chr12	57789532	-	SUPT6H	chr17	27020714	+
In-frame	ENST00000353383	ENST00000329078		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	RAI1	chr17	17707163	+	SPNS2	chr17	4428352	+
intron-3CDS	ENST00000489697	ENST00000329078		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	RAI1	chr17	17707163	+	SPNS2	chr17	4428352	+
intron-3CDS	ENST00000261641	ENST00000329078		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	RAI1	chr17	17707163	+	SPNS2	chr17	4428352	+
Frame-shit	ENST00000361756	ENST00000377387		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000361756	ENST00000377390		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000361756	ENST00000377394		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000361756	ENST00000227503		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000361756	ENST00000334944		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000361756	ENST00000422298		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000361756	ENST00000433274		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-intron	ENST00000361756	ENST00000489544		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000533380	ENST00000377387		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000533380	ENST00000377390		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000533380	ENST00000377394		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000533380	ENST00000227503		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000533380	ENST00000334944		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000533380	ENST00000422298		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000533380	ENST00000433274		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-intron	ENST00000533380	ENST00000489544		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000393713	ENST00000377387		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000393713	ENST00000377390		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000393713	ENST00000377394		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000393713	ENST00000227503		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000393713	ENST00000334944		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000393713	ENST00000422298		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000393713	ENST00000433274		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-intron	ENST00000393713	ENST00000489544		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-3CDS	ENST00000490867	ENST00000377387		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-3CDS	ENST00000490867	ENST00000377390		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-3CDS	ENST00000490867	ENST00000377394		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-3CDS	ENST00000490867	ENST00000227503		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-3CDS	ENST00000490867	ENST00000334944		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-5UTR	ENST00000490867	ENST00000422298		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-5UTR	ENST00000490867	ENST00000433274		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
3UTR-intron	ENST00000490867	ENST00000489544		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-3CDS	ENST00000545854	ENST00000377387		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-3CDS	ENST00000545854	ENST00000377390		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-3CDS	ENST00000545854	ENST00000377394		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-3CDS	ENST00000545854	ENST00000227503		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-3CDS	ENST00000545854	ENST00000334944		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-5UTR	ENST00000545854	ENST00000422298		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-5UTR	ENST00000545854	ENST00000433274		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5UTR-intron	ENST00000545854	ENST00000489544		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000530137	ENST00000377387		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000530137	ENST00000377390		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000530137	ENST00000377394		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000530137	ENST00000227503		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
Frame-shit	ENST00000530137	ENST00000334944		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000530137	ENST00000422298		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-5UTR	ENST00000530137	ENST00000433274		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
5CDS-intron	ENST00000530137	ENST00000489544		TCGA	RV	BRCA	TCGA-E2-A576-01A	RNF121	chr11	71640170	+	SF1	chr11	64544098	-
In-frame	ENST00000341307	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000341307	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000341307	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000341307	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000341307	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000341307	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000341307	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000341307	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000356000	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000356000	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-3CDS	ENST00000538995	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
3UTR-intron	ENST00000538995	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000377819	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000377819	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000339997	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000339997	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000540798	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000540798	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000537981	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000537981	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000602723		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000400186		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000520002		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000602557		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000537824		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000542608		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
In-frame	ENST00000354497	ENST00000539096		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
5CDS-intron	ENST00000354497	ENST00000523387		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	RTN3	chr11	63449250	+	CSMD1	chr8	3855632	-
Frame-shit	ENST00000255559	ENST00000392650		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000255559	ENST00000388726		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
5CDS-5UTR	ENST00000255559	ENST00000410094		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000542342	ENST00000392650		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000542342	ENST00000388726		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
5CDS-5UTR	ENST00000542342	ENST00000410094		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
intron-3CDS	ENST00000579988	ENST00000392650		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
intron-3CDS	ENST00000579988	ENST00000388726		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
intron-5UTR	ENST00000579988	ENST00000410094		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000579732	ENST00000392650		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000579732	ENST00000388726		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
5CDS-5UTR	ENST00000579732	ENST00000410094		TCGA	RV	BRCA	TCGA-AO-A129-01A	SLC39A11	chr17	71027695	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000371847	ENST00000235310		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371847	ENST00000376692		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371847	ENST00000376672		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371847	ENST00000376669		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371847	ENST00000376667		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371843	ENST00000235310		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371843	ENST00000376692		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371843	ENST00000376672		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371843	ENST00000376669		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
Frame-shit	ENST00000371843	ENST00000376667		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
In-frame	ENST00000396199	ENST00000235310		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
In-frame	ENST00000396199	ENST00000376692		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
In-frame	ENST00000396199	ENST00000376672		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
In-frame	ENST00000396199	ENST00000376669		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
In-frame	ENST00000396199	ENST00000376667		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
intron-3CDS	ENST00000463938	ENST00000235310		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
intron-3CDS	ENST00000463938	ENST00000376692		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
intron-3CDS	ENST00000463938	ENST00000376672		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
intron-3CDS	ENST00000463938	ENST00000376669		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
intron-3CDS	ENST00000463938	ENST00000376667		TCGA	RV	BRCA	TCGA-E9-A22A-01A	SPATA6	chr1	48917224	-	MAD2L2	chr1	11737005	-
5CDS-5UTR	ENST00000393066	ENST00000397861		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-intron	ENST00000393066	ENST00000397862		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000393066	ENST00000575658		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000393066	ENST00000487705		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000262294	ENST00000397861		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-intron	ENST00000262294	ENST00000397862		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000262294	ENST00000575658		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000262294	ENST00000487705		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000376149	ENST00000397861		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-intron	ENST00000376149	ENST00000397862		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000376149	ENST00000575658		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000376149	ENST00000487705		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000393065	ENST00000397861		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-intron	ENST00000393065	ENST00000397862		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000393065	ENST00000575658		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
5CDS-5UTR	ENST00000393065	ENST00000487705		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
intron-5UTR	ENST00000584889	ENST00000397861		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
intron-intron	ENST00000584889	ENST00000397862		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
intron-5UTR	ENST00000584889	ENST00000575658		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
intron-5UTR	ENST00000584889	ENST00000487705		TCGA	RV	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902214	-
In-frame	ENST00000317702	ENST00000464233		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000317702	ENST00000436010		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000317702	ENST00000495273		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000317702	ENST00000467549		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000317702	ENST00000466906		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000591909	ENST00000464233		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000591909	ENST00000436010		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000591909	ENST00000495273		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000591909	ENST00000467549		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000591909	ENST00000466906		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000586653	ENST00000464233		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000586653	ENST00000436010		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000586653	ENST00000495273		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000586653	ENST00000467549		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000586653	ENST00000466906		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000592683	ENST00000464233		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000592683	ENST00000436010		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000592683	ENST00000495273		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000592683	ENST00000467549		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000592683	ENST00000466906		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000590967	ENST00000464233		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000590967	ENST00000436010		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000590967	ENST00000495273		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000590967	ENST00000467549		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000590967	ENST00000466906		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000591208	ENST00000464233		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000591208	ENST00000436010		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
In-frame	ENST00000591208	ENST00000495273		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000591208	ENST00000467549		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
5CDS-intron	ENST00000591208	ENST00000466906		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	TUBB6	chr18	12311052	+	ROBO1	chr3	78685258	-
Frame-shit	ENST00000261497	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A07P-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
5CDS-intron	ENST00000609104	ENST00000378825		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
5CDS-5UTR	ENST00000609104	ENST00000378839		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
5CDS-intron	ENST00000277575	ENST00000378825		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
5CDS-5UTR	ENST00000277575	ENST00000378839		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
5CDS-intron	ENST00000379237	ENST00000378825		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
5CDS-5UTR	ENST00000379237	ENST00000378839		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
intron-intron	ENST00000443016	ENST00000378825		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
intron-5UTR	ENST00000443016	ENST00000378839		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
intron-intron	ENST00000609853	ENST00000378825		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
intron-5UTR	ENST00000609853	ENST00000378839		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	USP6NL	chr10	11531101	-	CCDC3	chr10	13116100	-
Frame-shit	ENST00000475243	ENST00000360314		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
In-frame	ENST00000475243	ENST00000371336		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
Frame-shit	ENST00000475243	ENST00000434344		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
Frame-shit	ENST00000395802	ENST00000360314		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
In-frame	ENST00000395802	ENST00000371336		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
Frame-shit	ENST00000395802	ENST00000434344		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
3UTR-3CDS	ENST00000265619	ENST00000360314		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
3UTR-3CDS	ENST00000265619	ENST00000371336		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
3UTR-3CDS	ENST00000265619	ENST00000434344		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	VAPB	chr20	56964573	+	CASS4	chr20	55033396	+
Frame-shit	ENST00000265107	ENST00000377801		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	WDR70	chr5	37516692	+	PLCXD3	chr5	41313872	-
Frame-shit	ENST00000265107	ENST00000328457		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	WDR70	chr5	37516692	+	PLCXD3	chr5	41313872	-
Frame-shit	ENST00000504564	ENST00000377801		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	WDR70	chr5	37516692	+	PLCXD3	chr5	41313872	-
Frame-shit	ENST00000504564	ENST00000328457		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	WDR70	chr5	37516692	+	PLCXD3	chr5	41313872	-
3UTR-3CDS	ENST00000510699	ENST00000377801		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	WDR70	chr5	37516692	+	PLCXD3	chr5	41313872	-
3UTR-3CDS	ENST00000510699	ENST00000328457		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	WDR70	chr5	37516692	+	PLCXD3	chr5	41313872	-
In-frame	ENST00000517970	ENST00000281081		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
In-frame	ENST00000517970	ENST00000536705		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
5CDS-3UTR	ENST00000517970	ENST00000418681		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000349423	ENST00000281081		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000349423	ENST00000536705		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
intron-3UTR	ENST00000349423	ENST00000418681		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
In-frame	ENST00000341922	ENST00000281081		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
In-frame	ENST00000341922	ENST00000536705		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
5CDS-3UTR	ENST00000341922	ENST00000418681		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
In-frame	ENST00000265428	ENST00000281081		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
In-frame	ENST00000265428	ENST00000536705		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
5CDS-3UTR	ENST00000265428	ENST00000418681		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
3UTR-3CDS	ENST00000523863	ENST00000281081		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
3UTR-3CDS	ENST00000523863	ENST00000536705		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
3UTR-3UTR	ENST00000523863	ENST00000418681		TCGA	RV	BRCA	TCGA-E9-A22A-01A	WWP1	chr8	87393858	+	NUBPL	chr14	32295835	+
5CDS-intron	ENST00000287218	ENST00000510325		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000287218	ENST00000359359		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000287218	ENST00000480824		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000287218	ENST00000355190		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000287218	ENST00000373685		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-intron	ENST00000373391	ENST00000510325		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000373391	ENST00000359359		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000373391	ENST00000480824		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000373391	ENST00000355190		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
5CDS-5UTR	ENST00000373391	ENST00000373685		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
intron-intron	ENST00000463847	ENST00000510325		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
intron-5UTR	ENST00000463847	ENST00000359359		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
intron-5UTR	ENST00000463847	ENST00000480824		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
intron-5UTR	ENST00000463847	ENST00000355190		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
intron-5UTR	ENST00000463847	ENST00000373685		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	ZFAND3	chr6	37787792	+	C6orf89	chr6	36869997	+
Frame-shit	ENST00000316059	ENST00000310653		TCGA	RV	BRCA	TCGA-A8-A092-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000336083		TCGA	RV	BRCA	TCGA-A8-A092-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000536566		TCGA	RV	BRCA	TCGA-A8-A092-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000541588		TCGA	RV	BRCA	TCGA-A8-A092-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
In-frame	ENST00000193403	ENST00000377961		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
5CDS-3UTR	ENST00000193403	ENST00000334979		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
In-frame	ENST00000394419	ENST00000377961		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
5CDS-3UTR	ENST00000394419	ENST00000334979		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
In-frame	ENST00000438964	ENST00000377961		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
5CDS-3UTR	ENST00000438964	ENST00000334979		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
In-frame	ENST00000376839	ENST00000377961		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
5CDS-3UTR	ENST00000376839	ENST00000334979		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
In-frame	ENST00000538545	ENST00000377961		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
5CDS-3UTR	ENST00000538545	ENST00000334979		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
intron-3CDS	ENST00000554508	ENST00000377961		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
intron-3UTR	ENST00000554508	ENST00000334979		TCGA	RV	BRCA	TCGA-BH-A0DQ-01A	ACTN1	chr14	69343799	-	SCGN	chr6	25691284	+
In-frame	ENST00000487273	ENST00000328195		TCGA	RV	BRCA	TCGA-WT-AB41-01A	ADAM9	chr8	38865502	+	PROSC	chr8	37623044	+
In-frame	ENST00000466936	ENST00000328195		TCGA	RV	BRCA	TCGA-WT-AB41-01A	ADAM9	chr8	38865502	+	PROSC	chr8	37623044	+
In-frame	ENST00000481513	ENST00000328195		TCGA	RV	BRCA	TCGA-WT-AB41-01A	ADAM9	chr8	38865502	+	PROSC	chr8	37623044	+
intron-3CDS	ENST00000484143	ENST00000328195		TCGA	RV	BRCA	TCGA-WT-AB41-01A	ADAM9	chr8	38865502	+	PROSC	chr8	37623044	+
Frame-shit	ENST00000420843	ENST00000336061		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000420843	ENST00000542104		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000420843	ENST00000540088		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000393505	ENST00000336061		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000393505	ENST00000542104		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000393505	ENST00000540088		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000360025	ENST00000336061		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000360025	ENST00000542104		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000360025	ENST00000540088		TCGA	RV	BRCA	TCGA-A8-A0A9-01A	ARRB1	chr11	74992119	-	RASSF3	chr12	65078567	+
In-frame	ENST00000357668	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
5CDS-5UTR	ENST00000357668	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
5CDS-5UTR	ENST00000357668	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
5CDS-intron	ENST00000357668	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
Frame-shit	ENST00000518721	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
5CDS-5UTR	ENST00000518721	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
5CDS-5UTR	ENST00000518721	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
5CDS-intron	ENST00000518721	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
intron-3CDS	ENST00000520625	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
intron-5UTR	ENST00000520625	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
intron-5UTR	ENST00000520625	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
intron-intron	ENST00000520625	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A27A-01A	ASAP1	chr8	131370263	-	CLVS1	chr8	62366700	+
Frame-shit	ENST00000541428	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
Frame-shit	ENST00000541428	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
5CDS-5UTR	ENST00000541428	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
5CDS-intron	ENST00000541428	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
Frame-shit	ENST00000379454	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
Frame-shit	ENST00000379454	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
5CDS-5UTR	ENST00000379454	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
5CDS-intron	ENST00000379454	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000523897	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000523897	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000523897	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000523897	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000522919	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000522919	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000522919	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000522919	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000356457	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000356457	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000356457	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000356457	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000518068	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000518068	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000518068	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000518068	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517903	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517903	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000517903	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000517903	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000445642	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000445642	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000445642	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000445642	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517847	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517847	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000517847	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000517847	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000522835	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000522835	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000522835	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000522835	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517856	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517856	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000517856	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000517856	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000389204	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000389204	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000389204	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000389204	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000522603	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000522603	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000522603	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000522603	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000379449	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000379449	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000379449	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000379449	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517661	ENST00000308488		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-3CDS	ENST00000517661	ENST00000360355		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-5UTR	ENST00000517661	ENST00000480887		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
intron-intron	ENST00000517661	ENST00000530604		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ASPH	chr8	62430087	-	RSF1	chr11	77413540	-
Frame-shit	ENST00000348959	ENST00000550433		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000348959	ENST00000548513		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000348959	ENST00000549446		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000348959	ENST00000298972		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000348959	ENST00000341669		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000348959	ENST00000350228		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000348959	ENST00000540018		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000348959	ENST00000393288		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000348959	ENST00000548243		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000261173	ENST00000550433		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000261173	ENST00000548513		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000261173	ENST00000549446		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000261173	ENST00000298972		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000261173	ENST00000341669		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000261173	ENST00000350228		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000261173	ENST00000540018		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000261173	ENST00000393288		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000261173	ENST00000548243		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000359142	ENST00000550433		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000359142	ENST00000548513		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000359142	ENST00000549446		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000359142	ENST00000298972		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000359142	ENST00000341669		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000359142	ENST00000350228		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000359142	ENST00000540018		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000359142	ENST00000393288		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000359142	ENST00000548243		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000428670	ENST00000550433		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000428670	ENST00000548513		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000428670	ENST00000549446		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000428670	ENST00000298972		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000428670	ENST00000341669		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000428670	ENST00000350228		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000428670	ENST00000540018		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000428670	ENST00000393288		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000428670	ENST00000548243		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000393164	ENST00000550433		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000393164	ENST00000548513		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000393164	ENST00000549446		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000393164	ENST00000298972		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
Frame-shit	ENST00000393164	ENST00000341669		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000393164	ENST00000350228		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000393164	ENST00000540018		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000393164	ENST00000393288		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5CDS-intron	ENST00000393164	ENST00000548243		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	ATP2B1	chr12	90004970	-	KCNC2	chr12	75442097	-
5UTR-3CDS	ENST00000415149	ENST00000267163		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-intron	ENST00000415149	ENST00000484879		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-3CDS	ENST00000402543	ENST00000267163		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-intron	ENST00000402543	ENST00000484879		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-3CDS	ENST00000325805	ENST00000267163		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-intron	ENST00000325805	ENST00000484879		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-3CDS	ENST00000416476	ENST00000267163		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
5UTR-intron	ENST00000416476	ENST00000484879		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
intron-3CDS	ENST00000406780	ENST00000267163		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
intron-intron	ENST00000406780	ENST00000484879		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
intron-3CDS	ENST00000473542	ENST00000267163		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
intron-intron	ENST00000473542	ENST00000484879		TCGA	RV	BRCA	TCGA-GM-A2DH-01A	BBX	chr3	107245245	+	RB1	chr13	48934153	+
intron-3CDS	ENST00000533988	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000533988	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000533988	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000533988	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000533988	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000533988	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000533988	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-intron	ENST00000533988	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524490	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524490	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000524490	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000524490	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524490	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524490	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524490	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000524490	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000334736	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000334736	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000334736	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000334736	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000334736	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000334736	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000334736	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000334736	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000343878	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000343878	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000343878	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000343878	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000343878	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000343878	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000343878	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000343878	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525959	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-intron	ENST00000525959	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000533248	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000533248	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000533248	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000533248	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000533248	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000533248	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000533248	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000533248	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525919	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525919	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000525919	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000525919	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525919	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525919	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525919	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000525919	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524767	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524767	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000524767	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000524767	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524767	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524767	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000524767	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000524767	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525038	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525038	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000525038	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000525038	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525038	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525038	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000525038	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000525038	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000529032	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000529032	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000529032	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
Frame-shit	ENST00000529032	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000529032	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000529032	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
In-frame	ENST00000529032	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
5CDS-intron	ENST00000529032	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	C11orf30	chr11	76237679	+	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000461377	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000461377	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000461377	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3UTR	ENST00000461377	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-intron	ENST00000461377	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
In-frame	ENST00000258781	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000258781	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000258781	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000258781	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000258781	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
In-frame	ENST00000544363	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000544363	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000544363	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000544363	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000544363	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
In-frame	ENST00000541586	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000541586	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000541586	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000541586	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000541586	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000475551	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000475551	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000475551	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3UTR	ENST00000475551	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-intron	ENST00000475551	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000381112	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000381112	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000381112	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3UTR	ENST00000381112	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-intron	ENST00000381112	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000474617	ENST00000309930		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000474617	ENST00000401647		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000474617	ENST00000335693		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3UTR	ENST00000474617	ENST00000464028		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-intron	ENST00000474617	ENST00000540834		TCGA	RV	BRCA	TCGA-OL-A66P-01A	CCM2	chr7	45039962	+	C7orf10	chr7	40899915	+
intron-3CDS	ENST00000395290	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000395290	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000395290	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000358597	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000358597	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000358597	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000395292	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000395292	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000395292	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000310513	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000310513	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000310513	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000361904	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000361904	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000361904	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000539455	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000539455	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000539455	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000531165	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000531165	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000531165	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000532048	ENST00000302503		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000532048	ENST00000542981		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000532048	ENST00000534074		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	CELF1	chr11	47586826	-	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000430710	ENST00000397762		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
intron-5UTR	ENST00000430710	ENST00000461909		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
intron-3CDS	ENST00000399982	ENST00000397762		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
intron-5UTR	ENST00000399982	ENST00000461909		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
5UTR-3CDS	ENST00000557364	ENST00000397762		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
5UTR-5UTR	ENST00000557364	ENST00000461909		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
intron-3CDS	ENST00000555962	ENST00000397762		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
intron-5UTR	ENST00000555962	ENST00000461909		TCGA	RV	BRCA	TCGA-AN-A0FX-01A	CHD8	chr14	21924191	-	RAB2B	chr14	21936911	-
Frame-shit	ENST00000393043	ENST00000300971		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000393043	ENST00000595684		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000393043	ENST00000352727		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000393043	ENST00000332386		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000393043	ENST00000335393		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000393043	ENST00000601861		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000393043	ENST00000599164		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-3UTR	ENST00000393043	ENST00000597887		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000393043	ENST00000449408		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000393043	ENST00000600871		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000393043	ENST00000599124		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000300971		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000595684		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000352727		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000332386		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000335393		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000601861		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000269122	ENST00000599164		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-3UTR	ENST00000269122	ENST00000597887		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000269122	ENST00000449408		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000269122	ENST00000600871		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000269122	ENST00000599124		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000300971		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000595684		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000352727		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000332386		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000335393		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000601861		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
Frame-shit	ENST00000579456	ENST00000599164		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-3UTR	ENST00000579456	ENST00000597887		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000579456	ENST00000449408		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000579456	ENST00000600871		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
5CDS-5UTR	ENST00000579456	ENST00000599124		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000300971		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000595684		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000352727		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000332386		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000335393		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000601861		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3CDS	ENST00000579815	ENST00000599164		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-3UTR	ENST00000579815	ENST00000597887		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-5UTR	ENST00000579815	ENST00000449408		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-5UTR	ENST00000579815	ENST00000600871		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
intron-5UTR	ENST00000579815	ENST00000599124		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	CLTC	chr17	57697534	+	FAM129C	chr19	17648185	+
In-frame	ENST00000288221	ENST00000338458		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
In-frame	ENST00000288221	ENST00000496106		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
5CDS-5UTR	ENST00000288221	ENST00000498517		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
5CDS-intron	ENST00000288221	ENST00000296315		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
5CDS-intron	ENST00000288221	ENST00000413728		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
5CDS-intron	ENST00000288221	ENST00000497267		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
5CDS-intron	ENST00000288221	ENST00000495373		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-3CDS	ENST00000486496	ENST00000338458		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-3CDS	ENST00000486496	ENST00000496106		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-5UTR	ENST00000486496	ENST00000498517		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000486496	ENST00000296315		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000486496	ENST00000413728		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000486496	ENST00000497267		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000486496	ENST00000495373		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	ERC2	chr3	56468379	-	ARHGEF3	chr3	56916382	-
Frame-shit	ENST00000396153	ENST00000371191		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
Frame-shit	ENST00000396153	ENST00000407417		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000396153	ENST00000479364		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000396153	ENST00000371189		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000396153	ENST00000403491		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000396153	ENST00000371187		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000396153	ENST00000485903		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000396153	ENST00000371185		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-intron	ENST00000396153	ENST00000371184		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-intron	ENST00000396153	ENST00000357977		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
In-frame	ENST00000371778	ENST00000371191		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
In-frame	ENST00000371778	ENST00000407417		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000371778	ENST00000479364		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000371778	ENST00000371189		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000371778	ENST00000403491		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000371778	ENST00000371187		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000371778	ENST00000485903		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-3UTR	ENST00000371778	ENST00000371185		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-intron	ENST00000371778	ENST00000371184		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5CDS-intron	ENST00000371778	ENST00000357977		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3CDS	ENST00000545823	ENST00000371191		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3CDS	ENST00000545823	ENST00000407417		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000545823	ENST00000479364		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000545823	ENST00000371189		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000545823	ENST00000403491		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000545823	ENST00000371187		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000545823	ENST00000485903		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000545823	ENST00000371185		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-intron	ENST00000545823	ENST00000371184		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-intron	ENST00000545823	ENST00000357977		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3CDS	ENST00000472808	ENST00000371191		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3CDS	ENST00000472808	ENST00000407417		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000472808	ENST00000479364		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000472808	ENST00000371189		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000472808	ENST00000403491		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000472808	ENST00000371187		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000472808	ENST00000485903		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-3UTR	ENST00000472808	ENST00000371185		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-intron	ENST00000472808	ENST00000371184		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
intron-intron	ENST00000472808	ENST00000357977		TCGA	RV	BRCA	TCGA-BH-A1FC-01A	FAF1	chr1	51425439	-	NFIA	chr1	61818122	+
5UTR-3CDS	ENST00000375592	ENST00000344691		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000375592	ENST00000325074		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000375592	ENST00000437180		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000375592	ENST00000300305		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000375592	ENST00000399240		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000375592	ENST00000486278		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000375592	ENST00000494829		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000375592	ENST00000358356		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000478089	ENST00000344691		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000478089	ENST00000325074		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000478089	ENST00000437180		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000478089	ENST00000300305		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000478089	ENST00000399240		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000478089	ENST00000486278		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000478089	ENST00000494829		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000478089	ENST00000358356		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	FBXO42	chr1	16678750	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000503238	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000503238	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000358350	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000358350	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000537810	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000537810	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5UTR-3CDS	ENST00000264319	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5UTR-intron	ENST00000264319	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000507711	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000507711	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000514783	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
intron-intron	ENST00000514783	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000507873	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
intron-intron	ENST00000507873	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000506685	ENST00000377452		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
intron-intron	ENST00000506685	ENST00000494921		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	FRYL	chr4	48621291	-	DTD1	chr20	18724744	+
5UTR-3CDS	ENST00000443617	ENST00000261891		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64204396	-
5UTR-3CDS	ENST00000443617	ENST00000457488		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64204396	-
5UTR-intron	ENST00000443617	ENST00000558069		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64204396	-
5UTR-intron	ENST00000443617	ENST00000558482		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64204396	-
5CDS-5UTR	ENST00000534064	ENST00000340149		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000534064	ENST00000361507		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000534064	ENST00000526030		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000535943	ENST00000340149		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000535943	ENST00000361507		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000535943	ENST00000526030		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000525931	ENST00000340149		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000525931	ENST00000361507		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000525931	ENST00000526030		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000529807	ENST00000340149		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000529807	ENST00000361507		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000529807	ENST00000526030		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000527522	ENST00000340149		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000527522	ENST00000361507		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000527522	ENST00000526030		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	INTS4	chr11	77690042	-	GAB2	chr11	77991947	-
intron-3CDS	ENST00000406516	ENST00000403222		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000406516	ENST00000407373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000406516	ENST00000332585		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000406516	ENST00000382310		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000406516	ENST00000446658		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000406516	ENST00000401475		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000406516	ENST00000437268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000406516	ENST00000535268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000406516	ENST00000496575		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000444929	ENST00000403222		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000444929	ENST00000407373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000444929	ENST00000332585		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000444929	ENST00000382310		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000444929	ENST00000446658		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000444929	ENST00000401475		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000444929	ENST00000437268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000444929	ENST00000535268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000444929	ENST00000496575		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000331728	ENST00000403222		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000331728	ENST00000407373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000331728	ENST00000332585		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000331728	ENST00000382310		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000331728	ENST00000446658		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000331728	ENST00000401475		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000331728	ENST00000437268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000331728	ENST00000535268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000331728	ENST00000496575		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000333611	ENST00000403222		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000333611	ENST00000407373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000333611	ENST00000332585		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000333611	ENST00000382310		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000333611	ENST00000446658		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000333611	ENST00000401475		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000333611	ENST00000437268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000333611	ENST00000535268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000333611	ENST00000496575		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000340552	ENST00000403222		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000340552	ENST00000407373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000340552	ENST00000332585		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000340552	ENST00000382310		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000340552	ENST00000446658		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000340552	ENST00000401475		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000340552	ENST00000437268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000340552	ENST00000535268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000340552	ENST00000496575		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000467301	ENST00000403222		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000467301	ENST00000407373		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000467301	ENST00000332585		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000467301	ENST00000382310		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000467301	ENST00000446658		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000467301	ENST00000401475		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000467301	ENST00000437268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000467301	ENST00000535268		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000467301	ENST00000496575		TCGA	RV	BRCA	TCGA-A7-A13D-01A	LIMK2	chr22	31621805	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000276585	ENST00000377791		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000276585	ENST00000602637		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000521434	ENST00000377791		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000521434	ENST00000602637		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
intron-intron	ENST00000521605	ENST00000377791		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
intron-3UTR	ENST00000521605	ENST00000602637		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
5UTR-intron	ENST00000522987	ENST00000377791		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
5UTR-3UTR	ENST00000522987	ENST00000602637		TCGA	RV	BRCA	TCGA-C8-A134-01A	MRPS28	chr8	80915234	-	HIST1H2AC	chr6	26138282	+
In-frame	ENST00000233146	ENST00000260649		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
In-frame	ENST00000233146	ENST00000409387		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000233146	ENST00000410056		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000233146	ENST00000409741		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000233146	ENST00000409229		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000233146	ENST00000409380		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000233146	ENST00000409294		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000233146	ENST00000409740		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
In-frame	ENST00000543555	ENST00000260649		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
In-frame	ENST00000543555	ENST00000409387		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000543555	ENST00000410056		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000543555	ENST00000409741		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000543555	ENST00000409229		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000543555	ENST00000409380		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000543555	ENST00000409294		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000543555	ENST00000409740		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
In-frame	ENST00000406134	ENST00000260649		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
In-frame	ENST00000406134	ENST00000409387		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000406134	ENST00000410056		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000406134	ENST00000409741		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000406134	ENST00000409229		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000406134	ENST00000409380		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000406134	ENST00000409294		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
5CDS-intron	ENST00000406134	ENST00000409740		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-3CDS	ENST00000461394	ENST00000260649		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-3CDS	ENST00000461394	ENST00000409387		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-intron	ENST00000461394	ENST00000410056		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-intron	ENST00000461394	ENST00000409741		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-intron	ENST00000461394	ENST00000409229		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-intron	ENST00000461394	ENST00000409380		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-intron	ENST00000461394	ENST00000409294		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
intron-intron	ENST00000461394	ENST00000409740		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MSH2	chr2	47637511	+	SLC3A1	chr2	44539725	+
In-frame	ENST00000318217	ENST00000367091		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
In-frame	ENST00000318217	ENST00000442471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
5CDS-5UTR	ENST00000318217	ENST00000528654		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
5CDS-5UTR	ENST00000318217	ENST00000420007		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
Frame-shit	ENST00000394649	ENST00000367091		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
Frame-shit	ENST00000394649	ENST00000442471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
5CDS-5UTR	ENST00000394649	ENST00000528654		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
5CDS-5UTR	ENST00000394649	ENST00000420007		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
In-frame	ENST00000579584	ENST00000367091		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
In-frame	ENST00000579584	ENST00000442471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
5CDS-5UTR	ENST00000579584	ENST00000528654		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
5CDS-5UTR	ENST00000579584	ENST00000420007		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-3CDS	ENST00000584232	ENST00000367091		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-3CDS	ENST00000584232	ENST00000442471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-5UTR	ENST00000584232	ENST00000528654		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-5UTR	ENST00000584232	ENST00000420007		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-3CDS	ENST00000583621	ENST00000367091		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-3CDS	ENST00000583621	ENST00000442471		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-5UTR	ENST00000583621	ENST00000528654		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
intron-5UTR	ENST00000583621	ENST00000420007		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	FAIM3	chr1	207078492	-
Frame-shit	ENST00000230859	ENST00000274192		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PAPD7	chr5	6743953	+	SRD5A1	chr5	6662929	+
5CDS-3UTR	ENST00000230859	ENST00000537411		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PAPD7	chr5	6743953	+	SRD5A1	chr5	6662929	+
5CDS-intron	ENST00000230859	ENST00000504286		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PAPD7	chr5	6743953	+	SRD5A1	chr5	6662929	+
5CDS-intron	ENST00000230859	ENST00000538824		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	PAPD7	chr5	6743953	+	SRD5A1	chr5	6662929	+
In-frame	ENST00000420696	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000420696	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000420696	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000420696	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000420696	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000420696	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000420696	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000401534	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000559240	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000367897	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000540236	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000560641	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000474046	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000485769	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000271417		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000529387		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000528703		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000526687		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000469934		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000525740		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
intron-3CDS	ENST00000540246	ENST00000529071		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	PBX1	chr1	164532548	+	ILDR2	chr1	166927338	-
In-frame	ENST00000287878	ENST00000305866		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
In-frame	ENST00000287878	ENST00000541136		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
In-frame	ENST00000287878	ENST00000544910		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
In-frame	ENST00000287878	ENST00000535481		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
5CDS-intron	ENST00000287878	ENST00000317751		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
5CDS-intron	ENST00000287878	ENST00000251739		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
5CDS-3UTR	ENST00000287878	ENST00000474412		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000418337	ENST00000305866		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000418337	ENST00000541136		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000418337	ENST00000544910		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000418337	ENST00000535481		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000418337	ENST00000317751		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000418337	ENST00000251739		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3UTR	ENST00000418337	ENST00000474412		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000433631	ENST00000305866		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000433631	ENST00000541136		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000433631	ENST00000544910		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000433631	ENST00000535481		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000433631	ENST00000317751		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000433631	ENST00000251739		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3UTR	ENST00000433631	ENST00000474412		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000492843	ENST00000305866		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000492843	ENST00000541136		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000492843	ENST00000544910		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000492843	ENST00000535481		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000492843	ENST00000317751		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000492843	ENST00000251739		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3UTR	ENST00000492843	ENST00000474412		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000392801	ENST00000305866		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000392801	ENST00000541136		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000392801	ENST00000544910		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000392801	ENST00000535481		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000392801	ENST00000317751		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000392801	ENST00000251739		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3UTR	ENST00000392801	ENST00000474412		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000461529	ENST00000305866		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000461529	ENST00000541136		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000461529	ENST00000544910		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3CDS	ENST00000461529	ENST00000535481		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000461529	ENST00000317751		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-intron	ENST00000461529	ENST00000251739		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
intron-3UTR	ENST00000461529	ENST00000474412		TCGA	RV	BRCA	TCGA-B6-A2IU-01A	PRKAG2	chr7	151573592	-	CCDC132	chr7	92970739	+
5CDS-5UTR	ENST00000310803	ENST00000528697		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000310803	ENST00000530763		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000310803	ENST00000534577		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000310803	ENST00000278198		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000310803	ENST00000527150		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000539159	ENST00000528697		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000539159	ENST00000530763		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000539159	ENST00000534577		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000539159	ENST00000278198		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000539159	ENST00000527150		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000561180	ENST00000528697		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000561180	ENST00000530763		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000561180	ENST00000534577		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000561180	ENST00000278198		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000561180	ENST00000527150		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000450598	ENST00000528697		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000450598	ENST00000530763		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000450598	ENST00000534577		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000450598	ENST00000278198		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000450598	ENST00000527150		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000558164	ENST00000528697		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000558164	ENST00000530763		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000558164	ENST00000534577		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000558164	ENST00000278198		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000558164	ENST00000527150		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000559830	ENST00000528697		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000559830	ENST00000530763		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000559830	ENST00000534577		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-intron	ENST00000559830	ENST00000278198		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5CDS-5UTR	ENST00000559830	ENST00000527150		TCGA	RV	BRCA	TCGA-B6-A0RG-01A	RASGRP1	chr15	38852022	-	LRRC4C	chr11	40162403	-
5UTR-intron	ENST00000543470	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543470	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543470	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543470	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366960	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366960	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366960	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366960	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366959	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366959	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366959	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5CDS-intron	ENST00000366959	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543354	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543354	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543354	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
5UTR-intron	ENST00000543354	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
3UTR-intron	ENST00000490299	ENST00000473875		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
3UTR-intron	ENST00000490299	ENST00000366534		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
3UTR-intron	ENST00000490299	ENST00000366533		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
3UTR-intron	ENST00000490299	ENST00000366531		TCGA	RV	BRCA	TCGA-BH-A203-01A	RPS6KC1	chr1	213277911	+	C1orf101	chr1	244715624	+
In-frame	ENST00000339570	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000339570	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000415380	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000415380	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000261693	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000261693	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000376788	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000376788	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000546215	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
In-frame	ENST00000546215	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000535005	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000535005	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000541205	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000541205	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000540495	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000540495	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000544327	ENST00000308736		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
intron-3CDS	ENST00000544327	ENST00000544745		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	SCARB1	chr12	125348141	-	DHX37	chr12	125462036	-
3UTR-3CDS	ENST00000555245	ENST00000353364		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
3UTR-3CDS	ENST00000555245	ENST00000280377		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
3UTR-3CDS	ENST00000555245	ENST00000393654		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
3UTR-intron	ENST00000555245	ENST00000550632		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
3UTR-intron	ENST00000555245	ENST00000312635		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000556605	ENST00000353364		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000556605	ENST00000280377		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000556605	ENST00000393654		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000556605	ENST00000550632		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000556605	ENST00000312635		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000336643	ENST00000353364		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000336643	ENST00000280377		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000336643	ENST00000393654		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000336643	ENST00000550632		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000336643	ENST00000312635		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000031146	ENST00000353364		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000031146	ENST00000280377		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000031146	ENST00000393654		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000031146	ENST00000550632		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000031146	ENST00000312635		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000557046	ENST00000353364		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000557046	ENST00000280377		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
Frame-shit	ENST00000557046	ENST00000393654		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000557046	ENST00000550632		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000557046	ENST00000312635		TCGA	RV	BRCA	TCGA-AN-A0AS-01A	SLC39A9	chr14	69890919	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000358161	ENST00000303617		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000358161	ENST00000375731		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000358161	ENST00000422391		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-5UTR	ENST00000358161	ENST00000478465		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000372739	ENST00000303617		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000372739	ENST00000375731		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000372739	ENST00000422391		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-5UTR	ENST00000372739	ENST00000478465		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000372731	ENST00000303617		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000372731	ENST00000375731		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-intron	ENST00000372731	ENST00000422391		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-5UTR	ENST00000372731	ENST00000478465		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
intron-intron	ENST00000475367	ENST00000303617		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
intron-intron	ENST00000475367	ENST00000375731		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
intron-intron	ENST00000475367	ENST00000422391		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
intron-5UTR	ENST00000475367	ENST00000478465		TCGA	RV	BRCA	TCGA-B6-A0RM-01A	SPTAN1	chr9	131331176	+	AUH	chr9	94087686	-
5CDS-5UTR	ENST00000338854	ENST00000411504		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000338854	ENST00000313838		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000338854	ENST00000399187		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000338854	ENST00000584166		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000338854	ENST00000399182		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-intron	ENST00000338854	ENST00000583995		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000395757	ENST00000411504		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000395757	ENST00000313838		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000395757	ENST00000399187		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000395757	ENST00000584166		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000395757	ENST00000399182		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-intron	ENST00000395757	ENST00000583995		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000355815	ENST00000411504		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000355815	ENST00000313838		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000355815	ENST00000399187		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000355815	ENST00000584166		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000355815	ENST00000399182		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-intron	ENST00000355815	ENST00000583995		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000261646	ENST00000411504		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000261646	ENST00000313838		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000261646	ENST00000399187		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000261646	ENST00000584166		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000261646	ENST00000399182		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-intron	ENST00000261646	ENST00000583995		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000435530	ENST00000411504		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000435530	ENST00000313838		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000435530	ENST00000399187		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000435530	ENST00000584166		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-5UTR	ENST00000435530	ENST00000399182		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
5CDS-intron	ENST00000435530	ENST00000583995		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000583732	ENST00000411504		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000583732	ENST00000313838		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000583732	ENST00000399187		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000583732	ENST00000584166		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-5UTR	ENST00000583732	ENST00000399182		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
intron-intron	ENST00000583732	ENST00000583995		TCGA	RV	BRCA	TCGA-AC-A2QH-01B	SREBF1	chr17	17740041	-	LRRC48	chr17	17877166	+
In-frame	ENST00000377524	ENST00000361271		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	STAM	chr10	17702547	+	PTPLA	chr10	17646046	-
5CDS-intron	ENST00000377524	ENST00000326961		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	STAM	chr10	17702547	+	PTPLA	chr10	17646046	-
5UTR-3CDS	ENST00000540523	ENST00000361271		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	STAM	chr10	17702547	+	PTPLA	chr10	17646046	-
5UTR-intron	ENST00000540523	ENST00000326961		TCGA	RV	BRCA	TCGA-BH-A1ES-06A	STAM	chr10	17702547	+	PTPLA	chr10	17646046	-
5CDS-3UTR	ENST00000372806	ENST00000371497		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000372806	ENST00000603338		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000372806	ENST00000329613		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000396731	ENST00000371497		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000396731	ENST00000603338		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000396731	ENST00000329613		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000372801	ENST00000371497		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000372801	ENST00000603338		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000372801	ENST00000329613		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000499879	ENST00000371497		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000499879	ENST00000603338		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000499879	ENST00000329613		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000487587	ENST00000371497		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000487587	ENST00000603338		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000487587	ENST00000329613		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	STK4	chr20	43615937	+	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000321105	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000321105	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
intron-3CDS	ENST00000540524	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
intron-5UTR	ENST00000540524	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-3CDS	ENST00000542570	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-5UTR	ENST00000542570	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-3CDS	ENST00000582230	ENST00000338694		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
5UTR-5UTR	ENST00000582230	ENST00000535086		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	TOP3A	chr17	18217913	-	TEKT1	chr17	6719281	-
Frame-shit	ENST00000451813	ENST00000341197		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000451813	ENST00000423191		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000451813	ENST00000372999		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000451813	ENST00000358131		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
5CDS-3UTR	ENST00000451813	ENST00000435864		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000252015	ENST00000341197		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000252015	ENST00000423191		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000252015	ENST00000372999		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000252015	ENST00000358131		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
5CDS-3UTR	ENST00000252015	ENST00000435864		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000539834	ENST00000341197		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000539834	ENST00000423191		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000539834	ENST00000372999		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000539834	ENST00000358131		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
5CDS-3UTR	ENST00000539834	ENST00000435864		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000432634	ENST00000341197		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000432634	ENST00000423191		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000432634	ENST00000372999		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000432634	ENST00000358131		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
5CDS-3UTR	ENST00000432634	ENST00000435864		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42695370	+
Frame-shit	ENST00000281741	ENST00000321662		TCGA	RV	BRCA	TCGA-C8-A26V-01A	TXNDC16	chr14	52936755	-	GPR137C	chr14	53098878	+
intron-3CDS	ENST00000554399	ENST00000321662		TCGA	RV	BRCA	TCGA-C8-A26V-01A	TXNDC16	chr14	52936755	-	GPR137C	chr14	53098878	+
intron-3CDS	ENST00000338677	ENST00000394907		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-intron	ENST00000338677	ENST00000535975		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-intron	ENST00000338677	ENST00000305435		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-intron	ENST00000338677	ENST00000563582		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
Frame-shit	ENST00000267938	ENST00000394907		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000267938	ENST00000535975		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000267938	ENST00000305435		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000267938	ENST00000563582		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
Frame-shit	ENST00000569423	ENST00000394907		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000569423	ENST00000535975		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000569423	ENST00000305435		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000569423	ENST00000563582		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
Frame-shit	ENST00000561851	ENST00000394907		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000561851	ENST00000535975		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000561851	ENST00000305435		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000561851	ENST00000563582		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-3CDS	ENST00000562635	ENST00000394907		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-intron	ENST00000562635	ENST00000535975		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-intron	ENST00000562635	ENST00000305435		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
intron-intron	ENST00000562635	ENST00000563582		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	UBE2Q2	chr15	76183355	+	NRG4	chr15	76235995	-
5CDS-intron	ENST00000374279	ENST00000314675		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-intron	ENST00000374279	ENST00000374223		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-intron	ENST00000374279	ENST00000357089		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-intron	ENST00000374279	ENST00000374221		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-5UTR	ENST00000374279	ENST00000374217		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-5UTR	ENST00000374279	ENST00000374222		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-intron	ENST00000374279	ENST00000535108		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
5CDS-intron	ENST00000374279	ENST00000436301		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-intron	ENST00000495085	ENST00000314675		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-intron	ENST00000495085	ENST00000374223		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-intron	ENST00000495085	ENST00000357089		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-intron	ENST00000495085	ENST00000374221		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-5UTR	ENST00000495085	ENST00000374217		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-5UTR	ENST00000495085	ENST00000374222		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-intron	ENST00000495085	ENST00000535108		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
3UTR-intron	ENST00000495085	ENST00000436301		TCGA	RV	BRCA	TCGA-E2-A1LA-01A	UGCG	chr9	114677026	+	UBXN11	chr1	26633195	-
Frame-shit	ENST00000369577	ENST00000441478		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
Frame-shit	ENST00000369577	ENST00000230124		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
5CDS-intron	ENST00000369577	ENST00000368941		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
Frame-shit	ENST00000339907	ENST00000441478		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
Frame-shit	ENST00000339907	ENST00000230124		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
5CDS-intron	ENST00000339907	ENST00000368941		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
Frame-shit	ENST00000392985	ENST00000441478		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
Frame-shit	ENST00000392985	ENST00000230124		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
5CDS-intron	ENST00000392985	ENST00000368941		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
3UTR-3CDS	ENST00000369578	ENST00000441478		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
3UTR-3CDS	ENST00000369578	ENST00000230124		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
3UTR-intron	ENST00000369578	ENST00000368941		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	ZNF292	chr6	87865477	+	FIG4	chr6	110098125	+
5UTR-3CDS	ENST00000475338	ENST00000367498		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
5UTR-5UTR	ENST00000475338	ENST00000459929		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
5UTR-5UTR	ENST00000475338	ENST00000392007		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
5UTR-intron	ENST00000475338	ENST00000367497		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
In-frame	ENST00000367595	ENST00000367498		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
5CDS-5UTR	ENST00000367595	ENST00000459929		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
5CDS-5UTR	ENST00000367595	ENST00000392007		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
5CDS-intron	ENST00000367595	ENST00000367497		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180366651	-	IVNS1ABP	chr1	185274775	-
intron-3CDS	ENST00000481208	ENST00000371237		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
intron-3CDS	ENST00000481208	ENST00000543257		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
intron-3CDS	ENST00000481208	ENST00000535057		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
intron-intron	ENST00000481208	ENST00000494324		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000343744	ENST00000371237		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000343744	ENST00000543257		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000343744	ENST00000535057		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
5CDS-intron	ENST00000343744	ENST00000494324		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000371316	ENST00000371237		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000371316	ENST00000543257		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000371316	ENST00000535057		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
5CDS-intron	ENST00000371316	ENST00000494324		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	ACOT11	chr1	55051577	+	C8B	chr1	57417853	-
In-frame	ENST00000324198	ENST00000215793		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ADRBK2	chr22	26040632	+	SF3A1	chr22	30749061	-
In-frame	ENST00000324198	ENST00000439242		TCGA	RV	BRCA	TCGA-A2-A0T3-01A	ADRBK2	chr22	26040632	+	SF3A1	chr22	30749061	-
In-frame	ENST00000383440	ENST00000433372		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000383440	ENST00000331145		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000383440	ENST00000395759		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000383440	ENST00000325278		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
5CDS-intron	ENST00000383440	ENST00000461101		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000262126	ENST00000433372		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000262126	ENST00000331145		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000262126	ENST00000395759		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000262126	ENST00000325278		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
5CDS-intron	ENST00000262126	ENST00000461101		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
3UTR-3CDS	ENST00000540578	ENST00000433372		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
3UTR-3CDS	ENST00000540578	ENST00000331145		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
3UTR-3CDS	ENST00000540578	ENST00000395759		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
3UTR-3CDS	ENST00000540578	ENST00000325278		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
3UTR-intron	ENST00000540578	ENST00000461101		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000400020	ENST00000433372		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000400020	ENST00000331145		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000400020	ENST00000395759		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
In-frame	ENST00000400020	ENST00000325278		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
5CDS-intron	ENST00000400020	ENST00000461101		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	ANKRD12	chr18	9221997	+	MTHFD2L	chr4	75091019	+
Frame-shit	ENST00000358602	ENST00000373433		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000358602	ENST00000471511		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
Frame-shit	ENST00000509867	ENST00000373433		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000509867	ENST00000471511		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
Frame-shit	ENST00000330838	ENST00000373433		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000330838	ENST00000471511		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
5UTR-3CDS	ENST00000514252	ENST00000373433		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
5UTR-intron	ENST00000514252	ENST00000471511		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ANKRD17	chr4	73979509	-	RPRD1B	chr20	36694483	+
In-frame	ENST00000371917	ENST00000402357		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
In-frame	ENST00000371917	ENST00000358295		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000371917	ENST00000473898		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000371917	ENST00000406880		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000493140	ENST00000402357		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000493140	ENST00000358295		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
intron-intron	ENST00000493140	ENST00000473898		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
intron-intron	ENST00000493140	ENST00000406880		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ARFGEF2	chr20	47538547	+	FAM19A5	chr22	49042409	+
In-frame	ENST00000371917	ENST00000371497		TCGA	RV	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000371917	ENST00000603338		TCGA	RV	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	TSHZ2	chr20	51870038	+
Frame-shit	ENST00000371917	ENST00000329613		TCGA	RV	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	TSHZ2	chr20	51870038	+
intron-3CDS	ENST00000493140	ENST00000371497		TCGA	RV	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	TSHZ2	chr20	51870038	+
intron-3CDS	ENST00000493140	ENST00000603338		TCGA	RV	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	TSHZ2	chr20	51870038	+
intron-3CDS	ENST00000493140	ENST00000329613		TCGA	RV	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000350026	ENST00000392185		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	ARID1B	chr6	157150555	+	SNX9	chr6	158288579	+
In-frame	ENST00000346085	ENST00000392185		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	ARID1B	chr6	157150555	+	SNX9	chr6	158288579	+
In-frame	ENST00000367148	ENST00000392185		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	ARID1B	chr6	157150555	+	SNX9	chr6	158288579	+
In-frame	ENST00000275248	ENST00000392185		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	ARID1B	chr6	157150555	+	SNX9	chr6	158288579	+
intron-3CDS	ENST00000478761	ENST00000392185		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	ARID1B	chr6	157150555	+	SNX9	chr6	158288579	+
Frame-shit	ENST00000366603	ENST00000366600		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
5CDS-intron	ENST00000366603	ENST00000313984		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
5CDS-intron	ENST00000366603	ENST00000494378		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
Frame-shit	ENST00000264183	ENST00000366600		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
5CDS-intron	ENST00000264183	ENST00000313984		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
5CDS-intron	ENST00000264183	ENST00000494378		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
Frame-shit	ENST00000349213	ENST00000366600		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
5CDS-intron	ENST00000349213	ENST00000313984		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
5CDS-intron	ENST00000349213	ENST00000494378		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
intron-3CDS	ENST00000494543	ENST00000366600		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
intron-intron	ENST00000494543	ENST00000313984		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
intron-intron	ENST00000494543	ENST00000494378		TCGA	RV	BRCA	TCGA-BH-A203-01A	ARID4B	chr1	235357328	-	B3GALNT2	chr1	235613655	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26J-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000539107	ENST00000381356		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000539107	ENST00000557540		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000539107	ENST00000555711		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000539107	ENST00000556885		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000539107	ENST00000554266		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000539107	ENST00000556351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000539107	ENST00000556927		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-intron	ENST00000539107	ENST00000555151		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000539107	ENST00000556402		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-intron	ENST00000539107	ENST00000553788		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
In-frame	ENST00000545336	ENST00000381356		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000545336	ENST00000557540		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
In-frame	ENST00000545336	ENST00000555711		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000545336	ENST00000556885		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000545336	ENST00000554266		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000545336	ENST00000556351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000545336	ENST00000556927		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-intron	ENST00000545336	ENST00000555151		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000545336	ENST00000556402		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-intron	ENST00000545336	ENST00000553788		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000381256	ENST00000381356		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000381256	ENST00000557540		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000381256	ENST00000555711		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3CDS	ENST00000381256	ENST00000556885		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000381256	ENST00000554266		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000381256	ENST00000556351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000381256	ENST00000556927		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-intron	ENST00000381256	ENST00000555151		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-3UTR	ENST00000381256	ENST00000556402		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
intron-intron	ENST00000381256	ENST00000553788		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
In-frame	ENST00000381259	ENST00000381356		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000381259	ENST00000557540		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
In-frame	ENST00000381259	ENST00000555711		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000381259	ENST00000556885		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000381259	ENST00000554266		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000381259	ENST00000556351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000381259	ENST00000556927		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-intron	ENST00000381259	ENST00000555151		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000381259	ENST00000556402		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-intron	ENST00000381259	ENST00000553788		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3CDS	ENST00000540401	ENST00000381356		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3CDS	ENST00000540401	ENST00000557540		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3CDS	ENST00000540401	ENST00000555711		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3CDS	ENST00000540401	ENST00000556885		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3UTR	ENST00000540401	ENST00000554266		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3UTR	ENST00000540401	ENST00000556351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3UTR	ENST00000540401	ENST00000556927		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-intron	ENST00000540401	ENST00000555151		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-3UTR	ENST00000540401	ENST00000556402		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
3UTR-intron	ENST00000540401	ENST00000553788		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
In-frame	ENST00000306172	ENST00000381356		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000306172	ENST00000557540		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
In-frame	ENST00000306172	ENST00000555711		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000306172	ENST00000556885		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000306172	ENST00000554266		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000306172	ENST00000556351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000306172	ENST00000556927		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-intron	ENST00000306172	ENST00000555151		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-3UTR	ENST00000306172	ENST00000556402		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
5CDS-intron	ENST00000306172	ENST00000553788		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CCDC91	chr12	28544344	+	LYRM5	chr12	25357025	+
Frame-shit	ENST00000209728	ENST00000305783		TCGA	RV	BRCA	TCGA-E2-A15H-01A	CDC6	chr17	38457282	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000209728	ENST00000442346		TCGA	RV	BRCA	TCGA-E2-A15H-01A	CDC6	chr17	38457282	+	RNFT1	chr17	58040645	-
5CDS-intron	ENST00000476243	ENST00000478194		TCGA	RV	BRCA	TCGA-E2-A109-01A	CENPV	chr17	16247911	-	FERMT1	chr20	6096691	-
5CDS-intron	ENST00000476243	ENST00000217289		TCGA	RV	BRCA	TCGA-E2-A109-01A	CENPV	chr17	16247911	-	FERMT1	chr20	6096691	-
5CDS-5UTR	ENST00000476243	ENST00000536936		TCGA	RV	BRCA	TCGA-E2-A109-01A	CENPV	chr17	16247911	-	FERMT1	chr20	6096691	-
5CDS-intron	ENST00000299736	ENST00000478194		TCGA	RV	BRCA	TCGA-E2-A109-01A	CENPV	chr17	16247911	-	FERMT1	chr20	6096691	-
5CDS-intron	ENST00000299736	ENST00000217289		TCGA	RV	BRCA	TCGA-E2-A109-01A	CENPV	chr17	16247911	-	FERMT1	chr20	6096691	-
5CDS-5UTR	ENST00000299736	ENST00000536936		TCGA	RV	BRCA	TCGA-E2-A109-01A	CENPV	chr17	16247911	-	FERMT1	chr20	6096691	-
5CDS-intron	ENST00000294053	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000294053	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000294053	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000294053	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000294053	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000294053	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000294053	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000294053	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000538039	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000538039	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000437826	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000437826	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000340729	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000340729	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000543042	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000543042	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-intron	ENST00000445069	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
5CDS-5UTR	ENST00000445069	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000538021	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-5UTR	ENST00000538021	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000449833		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000409161		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000423696		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000338508		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000409530		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000449116		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-intron	ENST00000542555	ENST00000357171		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-5UTR	ENST00000542555	ENST00000468619		TCGA	RV	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	SHANK2	chr11	70544868	-
intron-5UTR	ENST00000267085	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000267085	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000267085	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-intron	ENST00000267085	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000379843	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000379843	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000379843	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-intron	ENST00000379843	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000379846	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000379846	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000379846	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-intron	ENST00000379846	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000444623	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000444623	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000444623	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-intron	ENST00000444623	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000453446	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000453446	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000453446	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-intron	ENST00000453446	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
5UTR-5UTR	ENST00000542115	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
5UTR-5UTR	ENST00000542115	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
5UTR-5UTR	ENST00000542115	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
5UTR-intron	ENST00000542115	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000491654	ENST00000267082		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000491654	ENST00000422257		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-5UTR	ENST00000491654	ENST00000338737		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
intron-intron	ENST00000491654	ENST00000550743		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	CSAD	chr12	53575010	-	ITGB7	chr12	53594978	-
In-frame	ENST00000230895	ENST00000392185		TCGA	RV	BRCA	TCGA-A8-A09X-01A	DAP	chr5	10748287	-	SNX9	chr6	158327160	+
In-frame	ENST00000432074	ENST00000392185		TCGA	RV	BRCA	TCGA-A8-A09X-01A	DAP	chr5	10748287	-	SNX9	chr6	158327160	+
5UTR-3CDS	ENST00000510546	ENST00000392185		TCGA	RV	BRCA	TCGA-A8-A09X-01A	DAP	chr5	10748287	-	SNX9	chr6	158327160	+
In-frame	ENST00000585892	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000585892	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000585892	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000585892	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000314646	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000314646	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000314646	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000314646	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000359692	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000359692	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000359692	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000359692	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000389253	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000389253	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000389253	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000389253	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000355667	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000355667	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000355667	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000355667	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000408974	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000408974	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000408974	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000408974	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
3UTR-3CDS	ENST00000591819	ENST00000407327		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
3UTR-3CDS	ENST00000591819	ENST00000335757		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
3UTR-3CDS	ENST00000591819	ENST00000586078		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
3UTR-intron	ENST00000591819	ENST00000588214		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	DNM2	chr19	10886582	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000427159	ENST00000435607		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	FTSJ3	chr17	61897439	-	SCN4A	chr17	62019353	-
Frame-shit	ENST00000427159	ENST00000578147		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	FTSJ3	chr17	61897439	-	SCN4A	chr17	62019353	-
intron-3CDS	ENST00000580295	ENST00000435607		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	FTSJ3	chr17	61897439	-	SCN4A	chr17	62019353	-
intron-3CDS	ENST00000580295	ENST00000578147		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	FTSJ3	chr17	61897439	-	SCN4A	chr17	62019353	-
In-frame	ENST00000275364	ENST00000366535		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000275364	ENST00000462358		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
In-frame	ENST00000544127	ENST00000366535		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000544127	ENST00000462358		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
intron-3CDS	ENST00000491117	ENST00000366535		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
intron-intron	ENST00000491117	ENST00000462358		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
In-frame	ENST00000407904	ENST00000366535		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000407904	ENST00000462358		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
intron-3CDS	ENST00000407653	ENST00000366535		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
intron-intron	ENST00000407653	ENST00000462358		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
intron-3CDS	ENST00000396960	ENST00000366535		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
intron-intron	ENST00000396960	ENST00000462358		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	GNA12	chr7	2834562	-	ADSS	chr1	244601070	-
In-frame	ENST00000373823	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
In-frame	ENST00000373823	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373823	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373823	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373823	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373823	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373823	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373823	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000373808	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000373808	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373808	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373808	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373808	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373808	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373808	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373808	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000436847	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000436847	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000436847	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000436847	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000436847	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000436847	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000436847	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000436847	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000449733	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000449733	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000449733	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000449733	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000449733	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000449733	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000449733	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000449733	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000412819	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000412819	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000412819	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000412819	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000412819	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000412819	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000412819	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000412819	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000394353	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000394353	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000394353	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000394353	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000394353	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000394353	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000394353	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000394353	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000341272	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000341272	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000341272	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000341272	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000341272	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000341272	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000341272	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000341272	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000545652	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000545652	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000545652	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000545652	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000545652	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000545652	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000545652	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000545652	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000373818	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000373818	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373818	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373818	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000373818	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373818	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373818	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000373818	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000485767	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000485767	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000485767	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000485767	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000485767	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000485767	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000485767	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000485767	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000373807	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000373807	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000373807	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000373807	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000373807	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000373807	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000373807	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000373807	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000373806	ENST00000356136		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000373806	ENST00000528420		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000373806	ENST00000533454		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000373806	ENST00000531818		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000373806	ENST00000532130		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000373806	ENST00000539288		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000373806	ENST00000525872		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000373806	ENST00000538870		TCGA	RV	BRCA	TCGA-A7-A4SC-01A	GSN	chr9	124095120	+	UVRAG	chr11	75694431	+
In-frame	ENST00000443617	ENST00000300035		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	HERC1	chr15	64045157	-	KIAA0101	chr15	64658274	-
Frame-shit	ENST00000443617	ENST00000380258		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	HERC1	chr15	64045157	-	KIAA0101	chr15	64658274	-
In-frame	ENST00000443617	ENST00000559519		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	HERC1	chr15	64045157	-	KIAA0101	chr15	64658274	-
5CDS-3UTR	ENST00000443617	ENST00000558008		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	HERC1	chr15	64045157	-	KIAA0101	chr15	64658274	-
5CDS-intron	ENST00000443617	ENST00000558250		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	HERC1	chr15	64045157	-	KIAA0101	chr15	64658274	-
5CDS-5UTR	ENST00000306052	ENST00000356757		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000306052	ENST00000336655		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000306052	ENST00000497775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000371454	ENST00000356757		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000371454	ENST00000336655		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000371454	ENST00000497775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000465675	ENST00000356757		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000465675	ENST00000336655		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000465675	ENST00000497775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000354412	ENST00000356757		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000354412	ENST00000336655		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000354412	ENST00000497775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000347547	ENST00000356757		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000347547	ENST00000336655		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000347547	ENST00000497775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
intron-5UTR	ENST00000460214	ENST00000356757		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
intron-5UTR	ENST00000460214	ENST00000336655		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
intron-intron	ENST00000460214	ENST00000497775		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LRP8	chr1	53716362	-	TMEM217	chr6	37186817	-
5UTR-3CDS	ENST00000435085	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000435085	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000435085	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000435085	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000435085	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000435085	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000435085	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000435085	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000307198	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000307198	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000307198	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000307198	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000307198	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000307198	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000307198	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000307198	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000419228	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000419228	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000419228	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000419228	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000419228	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000419228	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000419228	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000419228	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000447974	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000447974	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000447974	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000447974	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000447974	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000447974	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000447974	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000447974	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000289488	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000289488	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000289488	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000289488	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000289488	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000289488	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000289488	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000289488	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000539271	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000539271	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539271	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539271	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539271	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539271	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000539271	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000539271	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000423494	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000423494	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000423494	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000423494	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000423494	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000423494	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000423494	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000423494	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000539587	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000539587	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539587	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539587	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539587	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000539587	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000539587	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000539587	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000538478	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000538478	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000538478	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000538478	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000538478	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000538478	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000538478	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000538478	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000324866	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000324866	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000324866	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000324866	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000324866	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000324866	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000324866	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000324866	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000439209	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-3CDS	ENST00000439209	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000439209	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000439209	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000439209	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-5UTR	ENST00000439209	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000439209	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
5UTR-intron	ENST00000439209	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-3CDS	ENST00000541614	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-3CDS	ENST00000541614	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000541614	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000541614	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000541614	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000541614	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000541614	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000541614	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-3CDS	ENST00000536917	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-3CDS	ENST00000536917	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000536917	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000536917	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000536917	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000536917	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000536917	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000536917	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-3CDS	ENST00000440313	ENST00000356136		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-3CDS	ENST00000440313	ENST00000528420		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000440313	ENST00000533454		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000440313	ENST00000531818		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000440313	ENST00000532130		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-5UTR	ENST00000440313	ENST00000539288		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000440313	ENST00000525872		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000440313	ENST00000538870		TCGA	RV	BRCA	TCGA-A8-A08S-01A	LRTOMT	chr11	71791931	+	UVRAG	chr11	75718578	+
intron-intron	ENST00000545844	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000545844	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000545844	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000545844	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000545844	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000567887	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000567887	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000567887	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000567887	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000567887	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000372915	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000372915	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000372915	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000372915	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000372915	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000361689	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000361689	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000361689	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000361689	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000361689	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000539005	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000539005	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000539005	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000539005	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000539005	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000317713	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000317713	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000317713	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000317713	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000317713	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000564288	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000564288	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000564288	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000564288	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000564288	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000289893	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000289893	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000289893	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000289893	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000289893	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000536367	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000536367	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000536367	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000536367	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000536367	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000484793	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000484793	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000484793	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000484793	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000484793	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000602421	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000602421	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000602421	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000602421	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000602421	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000476350	ENST00000316485		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000476350	ENST00000371158		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000476350	ENST00000543708		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000476350	ENST00000545929		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
intron-intron	ENST00000476350	ENST00000472512		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	MACF1	chr1	39571389	+	INADL	chr1	62613956	+
5CDS-intron	ENST00000318217	ENST00000269033		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000318217	ENST00000540801		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000318217	ENST00000324677		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000318217	ENST00000582084		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000318217	ENST00000590153		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000318217	ENST00000579954		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000394649	ENST00000269033		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000394649	ENST00000540801		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000394649	ENST00000324677		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000394649	ENST00000582084		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000394649	ENST00000590153		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000394649	ENST00000579954		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000579584	ENST00000269033		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000579584	ENST00000540801		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000579584	ENST00000324677		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000579584	ENST00000582084		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000579584	ENST00000590153		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
5CDS-intron	ENST00000579584	ENST00000579954		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000584232	ENST00000269033		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000584232	ENST00000540801		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000584232	ENST00000324677		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000584232	ENST00000582084		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000584232	ENST00000590153		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000584232	ENST00000579954		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000583621	ENST00000269033		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000583621	ENST00000540801		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000583621	ENST00000324677		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000583621	ENST00000582084		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000583621	ENST00000590153		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
intron-intron	ENST00000583621	ENST00000579954		TCGA	RV	BRCA	TCGA-A2-A04X-01A	MYO1D	chr17	30980861	-	SSH2	chr17	28175947	-
In-frame	ENST00000405201	ENST00000339570		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
In-frame	ENST00000405201	ENST00000415380		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
In-frame	ENST00000405201	ENST00000261693		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000405201	ENST00000376788		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000405201	ENST00000546215		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000339570		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000415380		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000261693		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404621	ENST00000376788		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404621	ENST00000546215		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404121	ENST00000339570		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404121	ENST00000415380		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404121	ENST00000261693		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404121	ENST00000376788		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404121	ENST00000546215		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000339570		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000415380		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000261693		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000356219	ENST00000376788		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000356219	ENST00000546215		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000339570		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000415380		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000261693		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000397355	ENST00000376788		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000397355	ENST00000546215		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000339570		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000415380		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000261693		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000429285	ENST00000376788		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000429285	ENST00000546215		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000038176	ENST00000519476		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000038176	ENST00000297720		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000038176	ENST00000524874		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000038176	ENST00000379957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000038176	ENST00000523983		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000038176	ENST00000527710		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000038176	ENST00000528827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000519476		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000297720		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000524874		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000379957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000523983		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000527710		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5CDS-intron	ENST00000427130	ENST00000528827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000519476		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000297720		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000524874		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000379957		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000523983		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000527710		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
intron-intron	ENST00000519858	ENST00000528827		TCGA	RV	BRCA	TCGA-C8-A27A-01A	NSMAF	chr8	59509946	-	LETM2	chr8	38257790	+
5UTR-5UTR	ENST00000368465	ENST00000475338		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000368465	ENST00000367595		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000368463	ENST00000475338		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000368463	ENST00000367595		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000539880	ENST00000475338		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000539880	ENST00000367595		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000542459	ENST00000475338		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000542459	ENST00000367595		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000368460	ENST00000475338		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000368460	ENST00000367595		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
intron-5UTR	ENST00000498553	ENST00000475338		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
intron-5UTR	ENST00000498553	ENST00000367595		TCGA	RV	BRCA	TCGA-BH-A8FY-01A	PBXIP1	chr1	154928545	-	ACBD6	chr1	180283857	-
Frame-shit	ENST00000418929	ENST00000246794		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PRR12	chr19	50124879	+	PRRG2	chr19	50091754	+
5CDS-intron	ENST00000418929	ENST00000596700		TCGA	RV	BRCA	TCGA-E2-A15E-06A	PRR12	chr19	50124879	+	PRRG2	chr19	50091754	+
Frame-shit	ENST00000522684	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000522684	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000522684	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000522684	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000535192	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000535192	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000535192	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000535192	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000519465	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000519465	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000519465	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000519465	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000517887	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000517887	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000517887	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000517887	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000521059	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000521059	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000521059	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000521059	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000395218	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000395218	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000395218	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000395218	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000538769	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000538769	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000538769	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000538769	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000340930	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000340930	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000340930	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000340930	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000519419	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000519419	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000519419	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000519419	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000430260	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000430260	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000430260	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000430260	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000519881	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
Frame-shit	ENST00000519881	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000519881	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000519881	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
In-frame	ENST00000520892	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
In-frame	ENST00000520892	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-5UTR	ENST00000520892	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
5CDS-intron	ENST00000520892	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000519635	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000519635	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000519635	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000519635	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000517712	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000517712	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000517712	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000517712	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000522950	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000522950	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000522950	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000522950	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000520151	ENST00000337537		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000520151	ENST00000555899		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-5UTR	ENST00000520151	ENST00000422769		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-intron	ENST00000520151	ENST00000553266		TCGA	RV	BRCA	TCGA-BH-A0B6-01A	PTK2	chr8	141900642	-	PPP2R5E	chr14	63920603	-
intron-3CDS	ENST00000424085	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000424085	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000424085	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000424085	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000424085	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000424085	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000424085	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000424085	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000424085	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000257075	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000257075	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000257075	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000373747	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000373747	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000373747	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000426105	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000426105	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000426105	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000440538	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000440538	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000440538	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
In-frame	ENST00000373741	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000373741	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000373741	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000423018	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000423018	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000423018	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000373742	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000373742	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000373742	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000368226		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000368227		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000532331		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000368213		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000368210		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000368215		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-3CDS	ENST00000490546	ENST00000368207		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000490546	ENST00000524481		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
intron-5UTR	ENST00000490546	ENST00000525459		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	PUM1	chr1	31479841	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000423245	ENST00000254806		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000423245	ENST00000585462		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000423245	ENST00000591399		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000423245	ENST00000590221		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000423245	ENST00000344296		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000423245	ENST00000433525		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000423245	ENST00000590450		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
Frame-shit	ENST00000317905	ENST00000254806		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000317905	ENST00000585462		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000317905	ENST00000591399		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000317905	ENST00000590221		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000317905	ENST00000344296		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000317905	ENST00000433525		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000317905	ENST00000590450		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-3CDS	ENST00000420326	ENST00000254806		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000420326	ENST00000585462		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000420326	ENST00000591399		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000420326	ENST00000590221		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000420326	ENST00000344296		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000420326	ENST00000433525		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000420326	ENST00000590450		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
Frame-shit	ENST00000340830	ENST00000254806		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000340830	ENST00000585462		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000340830	ENST00000591399		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000340830	ENST00000590221		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000340830	ENST00000344296		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000340830	ENST00000433525		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000340830	ENST00000590450		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
Frame-shit	ENST00000584999	ENST00000254806		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000584999	ENST00000585462		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000584999	ENST00000591399		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000584999	ENST00000590221		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000584999	ENST00000344296		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000584999	ENST00000433525		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
5CDS-5UTR	ENST00000584999	ENST00000590450		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-3CDS	ENST00000443199	ENST00000254806		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000443199	ENST00000585462		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000443199	ENST00000591399		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000443199	ENST00000590221		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000443199	ENST00000344296		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000443199	ENST00000433525		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
intron-5UTR	ENST00000443199	ENST00000590450		TCGA	RV	BRCA	TCGA-A2-A04R-01A	RECQL5	chr17	73647266	-	WBP2	chr17	73847757	-
Frame-shit	ENST00000360565	ENST00000591517		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SCAF1	chr19	50161146	+	MAP4K1	chr19	39078457	-
In-frame	ENST00000360565	ENST00000586296		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SCAF1	chr19	50161146	+	MAP4K1	chr19	39078457	-
Frame-shit	ENST00000360565	ENST00000589130		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SCAF1	chr19	50161146	+	MAP4K1	chr19	39078457	-
Frame-shit	ENST00000360565	ENST00000396857		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SCAF1	chr19	50161146	+	MAP4K1	chr19	39078457	-
5CDS-intron	ENST00000360565	ENST00000423454		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SCAF1	chr19	50161146	+	MAP4K1	chr19	39078457	-
5CDS-intron	ENST00000360565	ENST00000589002		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	SCAF1	chr19	50161146	+	MAP4K1	chr19	39078457	-
Frame-shit	ENST00000280551	ENST00000499023		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000280551	ENST00000393905		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000280551	ENST00000302078		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000379735	ENST00000499023		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000379735	ENST00000393905		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000379735	ENST00000302078		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000429811	ENST00000499023		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000429811	ENST00000393905		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
In-frame	ENST00000429811	ENST00000302078		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
5UTR-3CDS	ENST00000505134	ENST00000499023		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
5UTR-3CDS	ENST00000505134	ENST00000393905		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
5UTR-3CDS	ENST00000505134	ENST00000302078		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000511481	ENST00000499023		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000511481	ENST00000393905		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
In-frame	ENST00000511481	ENST00000302078		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000419654	ENST00000499023		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000419654	ENST00000393905		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
Frame-shit	ENST00000419654	ENST00000302078		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	SEC24D	chr4	119673151	-	PLRG1	chr4	155457896	-
In-frame	ENST00000541742	ENST00000540432		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
In-frame	ENST00000541742	ENST00000354777		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
In-frame	ENST00000541742	ENST00000262348		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000541742	ENST00000370976		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000541742	ENST00000370971		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000541742	ENST00000491811		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000490107	ENST00000540432		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000490107	ENST00000354777		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000490107	ENST00000262348		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000490107	ENST00000370976		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000490107	ENST00000370971		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000490107	ENST00000491811		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000388985	ENST00000540432		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000388985	ENST00000354777		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000388985	ENST00000262348		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000388985	ENST00000370976		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000388985	ENST00000370971		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000388985	ENST00000491811		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000366517	ENST00000540432		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000366517	ENST00000354777		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000366517	ENST00000262348		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
intron-intron	ENST00000366517	ENST00000370976		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
intron-intron	ENST00000366517	ENST00000370971		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
intron-intron	ENST00000366517	ENST00000491811		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000403792	ENST00000540432		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000403792	ENST00000354777		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
Frame-shit	ENST00000403792	ENST00000262348		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000403792	ENST00000370976		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000403792	ENST00000370971		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5CDS-intron	ENST00000403792	ENST00000491811		TCGA	RV	BRCA	TCGA-E9-A1N6-01A	SMYD3	chr1	246518333	-	WLS	chr1	68659910	-
5UTR-3CDS	ENST00000393328	ENST00000017003		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000393328	ENST00000507602		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000393331	ENST00000017003		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000393331	ENST00000507602		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000347630	ENST00000017003		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000347630	ENST00000507602		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000504102	ENST00000017003		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000504102	ENST00000507602		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000503676	ENST00000017003		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000503676	ENST00000507602		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000513080	ENST00000017003		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000513080	ENST00000507602		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SPOP	chr17	47755295	-	XYLT2	chr17	48430991	+
In-frame	ENST00000176763	ENST00000379516		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	STK10	chr5	171614891	-	SNX2	chr5	122161745	+
In-frame	ENST00000176763	ENST00000514949		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	STK10	chr5	171614891	-	SNX2	chr5	122161745	+
5CDS-3UTR	ENST00000176763	ENST00000510372		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	STK10	chr5	171614891	-	SNX2	chr5	122161745	+
intron-3CDS	ENST00000517775	ENST00000379516		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	STK10	chr5	171614891	-	SNX2	chr5	122161745	+
intron-3CDS	ENST00000517775	ENST00000514949		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	STK10	chr5	171614891	-	SNX2	chr5	122161745	+
intron-3UTR	ENST00000517775	ENST00000510372		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	STK10	chr5	171614891	-	SNX2	chr5	122161745	+
In-frame	ENST00000369902	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000369902	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
In-frame	ENST00000369899	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000369899	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
In-frame	ENST00000423559	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000423559	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
intron-3CDS	ENST00000471000	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
intron-intron	ENST00000471000	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
Frame-shit	ENST00000316059	ENST00000310653		TCGA	RV	BRCA	TCGA-A8-A09C-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000336083		TCGA	RV	BRCA	TCGA-A8-A09C-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000536566		TCGA	RV	BRCA	TCGA-A8-A09C-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000541588		TCGA	RV	BRCA	TCGA-A8-A09C-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
5CDS-5UTR	ENST00000600714	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000600714	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-intron	ENST00000600714	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000601257	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-intron	ENST00000601257	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000301096	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-intron	ENST00000301096	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000544146	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-intron	ENST00000544146	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000536937	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-intron	ENST00000536937	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000597597	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-intron	ENST00000597597	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000541777	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-intron	ENST00000541777	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-5UTR	ENST00000545872	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5UTR-intron	ENST00000545872	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000594682	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-intron	ENST00000594682	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000391789	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-intron	ENST00000391789	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000596930	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-intron	ENST00000596930	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000597161	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-intron	ENST00000597161	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-5UTR	ENST00000598536	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
5CDS-intron	ENST00000598536	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000414778		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000373965		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395438		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000409834		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395440		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395446		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395442		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395445		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000373957		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395432		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395433		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000361849		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000395430		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000320301		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000437009		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-5UTR	ENST00000600457	ENST00000373955		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
intron-intron	ENST00000600457	ENST00000463095		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF83	chr19	53138319	-	PCDH15	chr10	56424050	-
In-frame	ENST00000274181	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ADAMTS16	chr5	5209359	+	ETV6	chr12	11905384	+
5CDS-3UTR	ENST00000274181	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ADAMTS16	chr5	5209359	+	ETV6	chr12	11905384	+
In-frame	ENST00000511368	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ADAMTS16	chr5	5209359	+	ETV6	chr12	11905384	+
5CDS-3UTR	ENST00000511368	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ADAMTS16	chr5	5209359	+	ETV6	chr12	11905384	+
intron-3CDS	ENST00000513709	ENST00000396373		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ADAMTS16	chr5	5209359	+	ETV6	chr12	11905384	+
intron-3UTR	ENST00000513709	ENST00000544715		TCGA	RV	BRCA	TCGA-A7-A4SD-01A	ADAMTS16	chr5	5209359	+	ETV6	chr12	11905384	+
5UTR-5UTR	ENST00000378330	ENST00000561030		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000378330	ENST00000567605		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000378330	ENST00000355300		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
5UTR-5UTR	ENST00000301030	ENST00000561030		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000301030	ENST00000567605		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000301030	ENST00000355300		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
intron-5UTR	ENST00000563291	ENST00000561030		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000563291	ENST00000567605		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000563291	ENST00000355300		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
intron-5UTR	ENST00000567736	ENST00000561030		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000567736	ENST00000567605		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000567736	ENST00000355300		TCGA	RV	BRCA	TCGA-GM-A3XL-01A	ANKRD11	chr16	89484692	-	LINGO1	chr15	77908242	-
In-frame	ENST00000291439	ENST00000300935		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000291439	ENST00000588105		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000291439	ENST00000586682		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
In-frame	ENST00000541844	ENST00000300935		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000541844	ENST00000588105		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000541844	ENST00000586682		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
In-frame	ENST00000590756	ENST00000300935		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000590756	ENST00000588105		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000590756	ENST00000586682		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
In-frame	ENST00000429941	ENST00000300935		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000429941	ENST00000588105		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000429941	ENST00000586682		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
In-frame	ENST00000444449	ENST00000300935		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000444449	ENST00000588105		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
5CDS-intron	ENST00000444449	ENST00000586682		TCGA	RV	BRCA	TCGA-AC-A5EH-01A	AP1M1	chr19	16319988	+	RAB8A	chr19	16236280	+
Frame-shit	ENST00000380317	ENST00000286149		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
Frame-shit	ENST00000380317	ENST00000388958		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
Frame-shit	ENST00000380317	ENST00000388956		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
5CDS-intron	ENST00000380317	ENST00000388957		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
5CDS-intron	ENST00000380317	ENST00000569064		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
intron-3CDS	ENST00000576194	ENST00000286149		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
intron-3CDS	ENST00000576194	ENST00000388958		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
intron-3CDS	ENST00000576194	ENST00000388956		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
intron-intron	ENST00000576194	ENST00000388957		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
intron-intron	ENST00000576194	ENST00000569064		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
Frame-shit	ENST00000215115	ENST00000286149		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
Frame-shit	ENST00000215115	ENST00000388958		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
Frame-shit	ENST00000215115	ENST00000388956		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
5CDS-intron	ENST00000215115	ENST00000388957		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
5CDS-intron	ENST00000215115	ENST00000569064		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	BCL7C	chr16	30900181	-	OTOA	chr16	21702905	+
Frame-shit	ENST00000314100	ENST00000324331		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
Frame-shit	ENST00000314100	ENST00000274680		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
Frame-shit	ENST00000481247	ENST00000324331		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
Frame-shit	ENST00000481247	ENST00000274680		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
Frame-shit	ENST00000419706	ENST00000324331		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
Frame-shit	ENST00000419706	ENST00000274680		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
In-frame	ENST00000408958	ENST00000324331		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
In-frame	ENST00000408958	ENST00000274680		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
In-frame	ENST00000403056	ENST00000324331		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
In-frame	ENST00000403056	ENST00000274680		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	BTBD9	chr6	38312760	-	FARS2	chr6	5545413	+
Frame-shit	ENST00000415676	ENST00000318789		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000415676	ENST00000475937		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000415676	ENST00000493089		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000415676	ENST00000484350		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000415676	ENST00000318779		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000415676	ENST00000491238		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000415676	ENST00000498215		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000415676	ENST00000468577		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000415676	ENST00000472382		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000288197	ENST00000318789		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000288197	ENST00000475937		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000288197	ENST00000493089		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000288197	ENST00000484350		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000288197	ENST00000318779		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000288197	ENST00000491238		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000288197	ENST00000498215		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000288197	ENST00000468577		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000288197	ENST00000472382		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000474759	ENST00000318789		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000474759	ENST00000475937		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000474759	ENST00000493089		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000474759	ENST00000484350		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000474759	ENST00000318779		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000474759	ENST00000491238		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000474759	ENST00000498215		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000474759	ENST00000468577		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000474759	ENST00000472382		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000490478	ENST00000318789		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000490478	ENST00000475937		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000490478	ENST00000493089		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
Frame-shit	ENST00000490478	ENST00000484350		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000490478	ENST00000318779		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000490478	ENST00000491238		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000490478	ENST00000498215		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000490478	ENST00000468577		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000490478	ENST00000472382		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-3CDS	ENST00000478261	ENST00000318789		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-3CDS	ENST00000478261	ENST00000475937		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-3CDS	ENST00000478261	ENST00000493089		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-3CDS	ENST00000478261	ENST00000484350		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-intron	ENST00000478261	ENST00000318779		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-intron	ENST00000478261	ENST00000491238		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-intron	ENST00000478261	ENST00000498215		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-intron	ENST00000478261	ENST00000468577		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
intron-intron	ENST00000478261	ENST00000472382		TCGA	RV	BRCA	TCGA-A2-A0CX-01A	CACNA2D3	chr3	54798378	+	FOXP1	chr3	71050210	-
5CDS-intron	ENST00000394303	ENST00000533988		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000524490		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000334736		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000343878		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000525959		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000533248		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000525919		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000524767		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000525038		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394303	ENST00000529032		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000533988		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000524490		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000334736		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000343878		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000525959		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000533248		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000525919		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000524767		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000525038		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000394310	ENST00000529032		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000533988		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000524490		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000334736		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000343878		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000525959		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000533248		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000525919		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000524767		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000525038		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5CDS-intron	ENST00000344140	ENST00000529032		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000533988		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000524490		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000334736		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000343878		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000525959		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000533248		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000525919		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000524767		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000525038		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
5UTR-intron	ENST00000582877	ENST00000529032		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	CACNB1	chr17	37343732	-	C11orf30	chr11	76207259	+
In-frame	ENST00000305866	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000305866	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
5CDS-3UTR	ENST00000305866	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000541136	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000541136	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
5CDS-3UTR	ENST00000541136	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000544910	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000544910	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
5CDS-3UTR	ENST00000544910	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000535481	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000535481	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
5CDS-3UTR	ENST00000535481	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000317751	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
In-frame	ENST00000317751	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
5CDS-3UTR	ENST00000317751	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
intron-3CDS	ENST00000251739	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
intron-3CDS	ENST00000251739	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
intron-3UTR	ENST00000251739	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
intron-3CDS	ENST00000474412	ENST00000261769		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
intron-3CDS	ENST00000474412	ENST00000422392		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
intron-3UTR	ENST00000474412	ENST00000562836		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CCDC132	chr7	92940584	+	CDH1	chr16	68862077	+
5UTR-3CDS	ENST00000335793	ENST00000392650		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000335793	ENST00000388726		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-5UTR	ENST00000335793	ENST00000410094		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000439510	ENST00000392650		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000439510	ENST00000388726		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-5UTR	ENST00000439510	ENST00000410094		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000581014	ENST00000392650		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000581014	ENST00000388726		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-5UTR	ENST00000581014	ENST00000410094		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
intron-3CDS	ENST00000582303	ENST00000392650		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
intron-3CDS	ENST00000582303	ENST00000388726		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
intron-5UTR	ENST00000582303	ENST00000410094		TCGA	RV	BRCA	TCGA-AN-A04A-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
Frame-shit	ENST00000181839	ENST00000543117		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000181839	ENST00000265393		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000181839	ENST00000409980		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000181839	ENST00000433216		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000181839	ENST00000396319		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
5CDS-intron	ENST00000181839	ENST00000494033		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000340829	ENST00000543117		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000340829	ENST00000265393		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000340829	ENST00000409980		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000340829	ENST00000433216		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000340829	ENST00000396319		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
5CDS-intron	ENST00000340829	ENST00000494033		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
3UTR-3CDS	ENST00000484589	ENST00000543117		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
3UTR-3CDS	ENST00000484589	ENST00000265393		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
3UTR-3CDS	ENST00000484589	ENST00000409980		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
3UTR-3CDS	ENST00000484589	ENST00000433216		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
3UTR-3CDS	ENST00000484589	ENST00000396319		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
3UTR-intron	ENST00000484589	ENST00000494033		TCGA	RV	BRCA	TCGA-E2-A105-01A	CDK13	chr7	40041630	+	TAX1BP1	chr7	27867357	+
Frame-shit	ENST00000361168	ENST00000368034		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000361168	ENST00000368033		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000361168	ENST00000322302		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000361168	ENST00000368032		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
5CDS-5UTR	ENST00000361168	ENST00000481677		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000368361	ENST00000368034		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000368361	ENST00000368033		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000368361	ENST00000322302		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000368361	ENST00000368032		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
5CDS-5UTR	ENST00000368361	ENST00000481677		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000355560	ENST00000368034		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000355560	ENST00000368033		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000355560	ENST00000322302		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000355560	ENST00000368032		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
5CDS-5UTR	ENST00000355560	ENST00000481677		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
intron-3CDS	ENST00000497188	ENST00000368034		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
intron-3CDS	ENST00000497188	ENST00000368033		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
intron-3CDS	ENST00000497188	ENST00000322302		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
intron-3CDS	ENST00000497188	ENST00000368032		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
intron-5UTR	ENST00000497188	ENST00000481677		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
In-frame	ENST00000536801	ENST00000368034		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
In-frame	ENST00000536801	ENST00000368033		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
In-frame	ENST00000536801	ENST00000322302		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
In-frame	ENST00000536801	ENST00000368032		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
5CDS-5UTR	ENST00000536801	ENST00000481677		TCGA	RV	BRCA	TCGA-AC-A62V-01A	CLK2	chr1	155239279	-	CD244	chr1	160808839	-
Frame-shit	ENST00000220166	ENST00000558480		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
Frame-shit	ENST00000220166	ENST00000419573		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5CDS-intron	ENST00000220166	ENST00000560334		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5CDS-intron	ENST00000220166	ENST00000394745		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5UTR-3CDS	ENST00000534533	ENST00000558480		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5UTR-3CDS	ENST00000534533	ENST00000419573		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5UTR-intron	ENST00000534533	ENST00000560334		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5UTR-intron	ENST00000534533	ENST00000394745		TCGA	RV	BRCA	TCGA-D8-A27R-01A	CTSH	chr15	79221754	-	RASGRF1	chr15	79254578	-
5CDS-5UTR	ENST00000225428	ENST00000358598		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5CDS-5UTR	ENST00000225428	ENST00000392711		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5CDS-5UTR	ENST00000225428	ENST00000589228		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5CDS-5UTR	ENST00000225428	ENST00000536854		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5CDS-5UTR	ENST00000225428	ENST00000586397		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5CDS-5UTR	ENST00000225428	ENST00000588188		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5UTR-5UTR	ENST00000536127	ENST00000358598		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5UTR-5UTR	ENST00000536127	ENST00000392711		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5UTR-5UTR	ENST00000536127	ENST00000589228		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5UTR-5UTR	ENST00000536127	ENST00000536854		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5UTR-5UTR	ENST00000536127	ENST00000586397		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
5UTR-5UTR	ENST00000536127	ENST00000588188		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	PRKAR1A	chr17	66511535	+
Frame-shit	ENST00000428559	ENST00000261349		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
Frame-shit	ENST00000428559	ENST00000543091		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
5CDS-intron	ENST00000428559	ENST00000540415		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
intron-3CDS	ENST00000532964	ENST00000261349		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
intron-3CDS	ENST00000532964	ENST00000543091		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
intron-intron	ENST00000532964	ENST00000540415		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
Frame-shit	ENST00000526530	ENST00000261349		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
Frame-shit	ENST00000526530	ENST00000543091		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
5CDS-intron	ENST00000526530	ENST00000540415		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
intron-3CDS	ENST00000532573	ENST00000261349		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
intron-3CDS	ENST00000532573	ENST00000543091		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
intron-intron	ENST00000532573	ENST00000540415		TCGA	RV	BRCA	TCGA-EW-A1J6-01A	DERA	chr12	16135370	+	LRP6	chr12	12302087	-
In-frame	ENST00000372546	ENST00000358161		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000372546	ENST00000372739		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000372546	ENST00000372731		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
5CDS-intron	ENST00000372546	ENST00000475367		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000406974	ENST00000358161		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000406974	ENST00000372739		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000406974	ENST00000372731		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
5CDS-intron	ENST00000406974	ENST00000475367		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000540102	ENST00000358161		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000540102	ENST00000372739		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000540102	ENST00000372731		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
5CDS-intron	ENST00000540102	ENST00000475367		TCGA	RV	BRCA	TCGA-AC-A62Y-01A	DOLPP1	chr9	131849077	+	SPTAN1	chr9	131379919	+
In-frame	ENST00000531863	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000531863	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-intron	ENST00000531863	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
In-frame	ENST00000532677	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000532677	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-intron	ENST00000532677	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
In-frame	ENST00000453114	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000453114	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-intron	ENST00000453114	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
In-frame	ENST00000360510	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000360510	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-intron	ENST00000360510	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
In-frame	ENST00000541961	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000541961	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-intron	ENST00000541961	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
In-frame	ENST00000530165	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000530165	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
5CDS-intron	ENST00000530165	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
intron-3CDS	ENST00000533799	ENST00000320580		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
intron-5UTR	ENST00000533799	ENST00000529757		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
intron-intron	ENST00000533799	ENST00000524815		TCGA	RV	BRCA	TCGA-A7-A13D-01A	DPP3	chr11	66264948	+	PACS1	chr11	65998019	+
In-frame	ENST00000290246	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
In-frame	ENST00000290246	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
Frame-shit	ENST00000372176	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
Frame-shit	ENST00000372176	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
Frame-shit	ENST00000396391	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
Frame-shit	ENST00000396391	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
In-frame	ENST00000439931	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
In-frame	ENST00000439931	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
Frame-shit	ENST00000445496	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
Frame-shit	ENST00000445496	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
intron-3CDS	ENST00000454865	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
intron-3CDS	ENST00000454865	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
In-frame	ENST00000352077	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
In-frame	ENST00000352077	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
5UTR-3CDS	ENST00000488853	ENST00000265404		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
5UTR-3CDS	ENST00000488853	ENST00000396225		TCGA	RV	BRCA	TCGA-AR-A1AN-01A	ELMO2	chr20	45008892	-	STAP1	chr4	68441103	+
In-frame	ENST00000378204	ENST00000308488		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	EXT1	chr8	118825111	-	RSF1	chr11	77451981	-
In-frame	ENST00000378204	ENST00000360355		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	EXT1	chr8	118825111	-	RSF1	chr11	77451981	-
5CDS-intron	ENST00000378204	ENST00000480887		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	EXT1	chr8	118825111	-	RSF1	chr11	77451981	-
5CDS-intron	ENST00000378204	ENST00000530604		TCGA	RV	BRCA	TCGA-BH-A1EN-01A	EXT1	chr8	118825111	-	RSF1	chr11	77451981	-
In-frame	ENST00000441478	ENST00000392587		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000441478	ENST00000392586		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000441478	ENST00000392588		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000441478	ENST00000392589		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000441478	ENST00000359451		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000230124	ENST00000392587		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000230124	ENST00000392586		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000230124	ENST00000392588		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000230124	ENST00000392589		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
In-frame	ENST00000230124	ENST00000359451		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
intron-3CDS	ENST00000368941	ENST00000392587		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
intron-3CDS	ENST00000368941	ENST00000392586		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
intron-3CDS	ENST00000368941	ENST00000392588		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
intron-3CDS	ENST00000368941	ENST00000392589		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
intron-3CDS	ENST00000368941	ENST00000359451		TCGA	RV	BRCA	TCGA-BH-A203-01A	FIG4	chr6	110098263	+	WASF1	chr6	110424760	-
5UTR-3CDS	ENST00000380877	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000380877	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000380877	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000380877	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000380877	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000380877	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000380877	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000220429	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000220429	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000220429	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000220429	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000220429	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000220429	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000220429	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000543881	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000543881	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000543881	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000543881	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000543881	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000543881	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000543881	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000429662	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000429662	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000429662	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000429662	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000429662	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000429662	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000429662	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000396464	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000396464	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000396464	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000396464	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000396464	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000396464	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000396464	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000359031	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000359031	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000359031	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000359031	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000359031	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000359031	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000359031	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000560825	ENST00000327171		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000560825	ENST00000560031		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3CDS	ENST00000560825	ENST00000396509		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000560825	ENST00000543495		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000560825	ENST00000544523		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000560825	ENST00000559454		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5UTR-3UTR	ENST00000560825	ENST00000561014		TCGA	RV	BRCA	TCGA-C8-A12T-01A	GABPB1	chr15	50647182	-	GALK2	chr15	49611801	+
5CDS-5UTR	ENST00000396253	ENST00000402198		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-5UTR	ENST00000396253	ENST00000402466		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000396253	ENST00000406341		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000396253	ENST00000407969		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000396253	ENST00000302463		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000396253	ENST00000488236		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-5UTR	ENST00000349215	ENST00000402198		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-5UTR	ENST00000349215	ENST00000402466		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000349215	ENST00000406341		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000349215	ENST00000407969		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000349215	ENST00000302463		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000349215	ENST00000488236		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-5UTR	ENST00000438420	ENST00000402198		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-5UTR	ENST00000438420	ENST00000402466		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000438420	ENST00000406341		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000438420	ENST00000407969		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000438420	ENST00000302463		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000438420	ENST00000488236		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-5UTR	ENST00000537258	ENST00000402198		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-5UTR	ENST00000537258	ENST00000402466		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000537258	ENST00000406341		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000537258	ENST00000407969		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000537258	ENST00000302463		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000537258	ENST00000488236		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-5UTR	ENST00000352460	ENST00000402198		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-5UTR	ENST00000352460	ENST00000402466		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000352460	ENST00000406341		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000352460	ENST00000407969		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000352460	ENST00000302463		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000352460	ENST00000488236		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-5UTR	ENST00000531848	ENST00000402198		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-5UTR	ENST00000531848	ENST00000402466		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000531848	ENST00000406341		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000531848	ENST00000407969		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000531848	ENST00000302463		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
intron-intron	ENST00000531848	ENST00000488236		TCGA	RV	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18318345	-	SETD5	chr3	9466151	+
5CDS-intron	ENST00000534064	ENST00000533988		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000524490		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000334736		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000343878		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000525959		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000533248		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000525919		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000524767		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000525038		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000534064	ENST00000529032		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000533988		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000524490		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000334736		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000343878		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000525959		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000533248		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000525919		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000524767		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000525038		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000535943	ENST00000529032		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000533988		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000524490		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000334736		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000343878		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000525959		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000533248		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000525919		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000524767		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000525038		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000525931	ENST00000529032		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000533988		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000524490		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000334736		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000343878		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000525959		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000533248		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000525919		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000524767		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000525038		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000529807	ENST00000529032		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000533988		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000524490		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000334736		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000343878		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000525959		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000533248		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000525919		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000524767		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000525038		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
intron-intron	ENST00000527522	ENST00000529032		TCGA	RV	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	C11orf30	chr11	76253260	+
5CDS-intron	ENST00000303400	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000303400	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000303400	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000303400	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505177	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505177	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505177	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505177	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000264750	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000264750	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000264750	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000264750	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000452175	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000452175	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000452175	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000452175	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000514708	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000514708	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000514708	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000514708	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000510794	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000510794	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000510794	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000510794	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505839	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505839	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505839	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
5CDS-intron	ENST00000505839	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000512289	ENST00000523829		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000512289	ENST00000356838		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000512289	ENST00000377901		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
intron-intron	ENST00000512289	ENST00000517538		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MAEA	chr4	1309388	+	TMEM71	chr8	133697351	-
Frame-shit	ENST00000265594	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MCCC1	chr3	182788787	-	MED10	chr5	6372714	-
Frame-shit	ENST00000492597	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MCCC1	chr3	182788787	-	MED10	chr5	6372714	-
Frame-shit	ENST00000539926	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MCCC1	chr3	182788787	-	MED10	chr5	6372714	-
intron-3CDS	ENST00000489909	ENST00000255764		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	MCCC1	chr3	182788787	-	MED10	chr5	6372714	-
intron-3CDS	ENST00000609205	ENST00000360906		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
intron-3CDS	ENST00000609205	ENST00000402280		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
intron-3CDS	ENST00000609205	ENST00000342905		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
intron-3CDS	ENST00000609205	ENST00000404025		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
Frame-shit	ENST00000360270	ENST00000360906		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
Frame-shit	ENST00000360270	ENST00000402280		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
Frame-shit	ENST00000360270	ENST00000342905		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
Frame-shit	ENST00000360270	ENST00000404025		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32461408	-
Frame-shit	ENST00000318217	ENST00000538566		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000318217	ENST00000328886		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000394649	ENST00000538566		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000394649	ENST00000328886		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000579584	ENST00000538566		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000579584	ENST00000328886		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000584232	ENST00000538566		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
intron-3CDS	ENST00000584232	ENST00000328886		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000583621	ENST00000538566		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000583621	ENST00000328886		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	MYO1D	chr17	31203796	-	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000261745	ENST00000349716		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NAA25	chr12	112518864	-	TBX5	chr12	114793911	-
In-frame	ENST00000261745	ENST00000310346		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NAA25	chr12	112518864	-	TBX5	chr12	114793911	-
In-frame	ENST00000261745	ENST00000405440		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NAA25	chr12	112518864	-	TBX5	chr12	114793911	-
5CDS-intron	ENST00000261745	ENST00000526441		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NAA25	chr12	112518864	-	TBX5	chr12	114793911	-
5CDS-intron	ENST00000261745	ENST00000552726		TCGA	RV	BRCA	TCGA-A2-A04U-01A	NAA25	chr12	112518864	-	TBX5	chr12	114793911	-
5CDS-5UTR	ENST00000268712	ENST00000466152		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000268712	ENST00000371588		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000268712	ENST00000371582		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000268712	ENST00000371583		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395851	ENST00000466152		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395851	ENST00000371588		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395851	ENST00000371582		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395851	ENST00000371583		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000395857	ENST00000466152		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000395857	ENST00000371588		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000395857	ENST00000371582		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000395857	ENST00000371583		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395848	ENST00000466152		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395848	ENST00000371588		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395848	ENST00000371582		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
5CDS-5UTR	ENST00000395848	ENST00000371583		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000583226	ENST00000466152		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000583226	ENST00000371588		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000583226	ENST00000371582		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
intron-5UTR	ENST00000583226	ENST00000371583		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	NCOR1	chr17	16055260	-	DPM1	chr20	49571822	-
In-frame	ENST00000420605	ENST00000324096		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
5CDS-intron	ENST00000420605	ENST00000597681		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
5CDS-intron	ENST00000420605	ENST00000544059		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-3CDS	ENST00000331552	ENST00000324096		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-intron	ENST00000331552	ENST00000597681		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-intron	ENST00000331552	ENST00000544059		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-3CDS	ENST00000544883	ENST00000324096		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-intron	ENST00000544883	ENST00000597681		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-intron	ENST00000544883	ENST00000544059		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-3CDS	ENST00000538165	ENST00000324096		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-intron	ENST00000538165	ENST00000597681		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
intron-intron	ENST00000538165	ENST00000544059		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	NR2C2AP	chr19	19312740	-	MAP1S	chr19	17835858	+
In-frame	ENST00000216277	ENST00000259056		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
5CDS-intron	ENST00000216277	ENST00000463418		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
In-frame	ENST00000557320	ENST00000259056		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
5CDS-intron	ENST00000557320	ENST00000463418		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
3UTR-3CDS	ENST00000554130	ENST00000259056		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
3UTR-intron	ENST00000554130	ENST00000463418		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
In-frame	ENST00000557471	ENST00000259056		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
5CDS-intron	ENST00000557471	ENST00000463418		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
In-frame	ENST00000392990	ENST00000259056		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
5CDS-intron	ENST00000392990	ENST00000463418		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	PAPOLA	chr14	96968937	+	GALNT5	chr2	158140794	+
In-frame	ENST00000328827	ENST00000283228		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
In-frame	ENST00000328827	ENST00000440835		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5CDS-intron	ENST00000328827	ENST00000537619		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5CDS-intron	ENST00000328827	ENST00000378778		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5CDS-intron	ENST00000328827	ENST00000342084		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5CDS-intron	ENST00000328827	ENST00000549308		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5UTR-3CDS	ENST00000547571	ENST00000283228		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5UTR-3CDS	ENST00000547571	ENST00000440835		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5UTR-intron	ENST00000547571	ENST00000537619		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5UTR-intron	ENST00000547571	ENST00000378778		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5UTR-intron	ENST00000547571	ENST00000342084		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
5UTR-intron	ENST00000547571	ENST00000549308		TCGA	RV	BRCA	TCGA-B6-A408-01A	PAWR	chr12	80083509	-	PTPRR	chr12	71092129	-
In-frame	ENST00000471595	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000471595	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000471595	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000471595	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000471595	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000471595	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000471595	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000471595	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000471595	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000471595	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000471595	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000478469	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000478469	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000478469	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000478469	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000478469	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000478469	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000478469	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000478469	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000478469	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000478469	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-5UTR	ENST00000478469	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000251654	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000251654	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000251654	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000251654	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000251654	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000251654	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000251654	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000251654	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000251654	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000251654	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000251654	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000483687	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000483687	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000483687	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000483687	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000483687	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000483687	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000483687	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000483687	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000483687	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000483687	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000483687	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000490504	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000490504	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000490504	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000490504	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000490504	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000490504	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000490504	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000490504	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000490504	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000490504	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000490504	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000466072	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000466072	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000466072	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000466072	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000466072	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000466072	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000466072	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000466072	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000466072	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000466072	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000466072	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000482086	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000482086	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000482086	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000482086	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000482086	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000482086	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000482086	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000482086	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000482086	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000482086	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000482086	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000468777	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000468777	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000468777	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000468777	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000468777	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000468777	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000468777	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000468777	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000468777	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000468777	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000468777	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000462637	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000462637	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000462637	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
Frame-shit	ENST00000462637	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000462637	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000462637	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000462637	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000462637	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000462637	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000462637	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000462637	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000469217	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000469217	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000469217	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000469217	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000469217	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000469217	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000469217	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000469217	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000469217	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-intron	ENST00000469217	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
5CDS-5UTR	ENST00000469217	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000474833	ENST00000357674		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000474833	ENST00000314062		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000474833	ENST00000346964		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000474833	ENST00000419354		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000474833	ENST00000452595		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000474833	ENST00000422288		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000474833	ENST00000448528		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000474833	ENST00000443183		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000474833	ENST00000450955		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-intron	ENST00000474833	ENST00000392382		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
intron-5UTR	ENST00000474833	ENST00000485409		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PCCB	chr3	136048826	+	DLG1	chr3	196921460	-
In-frame	ENST00000313382	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000313382	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000369354	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000369354	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000369356	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000369356	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000530740	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000530740	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000369359	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000369359	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000369351	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000369351	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000369349	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000369349	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-3CDS	ENST00000369347	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-intron	ENST00000369347	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-3CDS	ENST00000369348	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-intron	ENST00000369348	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-3CDS	ENST00000524974	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-intron	ENST00000524974	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000313431	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000313431	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000529945	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000529945	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
Frame-shit	ENST00000479408	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
5CDS-intron	ENST00000479408	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-3CDS	ENST00000493130	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-intron	ENST00000493130	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-3CDS	ENST00000478649	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-intron	ENST00000478649	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-3CDS	ENST00000369345	ENST00000331555		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
intron-intron	ENST00000369345	ENST00000469540		TCGA	RV	BRCA	TCGA-BH-A203-01A	PDE4DIP	chr1	144915445	-	C1orf186	chr1	206239579	-
In-frame	ENST00000563679	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000563679	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000563679	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000563679	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000563679	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000563679	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000325823	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000325823	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000325823	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000325823	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000325823	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000325823	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000447912	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000447912	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000447912	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000447912	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000447912	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000447912	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000535621	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000535621	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000535621	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000535621	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000535621	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000535621	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
intron-3CDS	ENST00000455313	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
intron-3CDS	ENST00000455313	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
intron-5UTR	ENST00000455313	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
intron-5UTR	ENST00000455313	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
intron-intron	ENST00000455313	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
intron-3UTR	ENST00000455313	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000396410	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000396410	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000396410	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000396410	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000396410	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000396410	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000569715	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000569715	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000569715	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000569715	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000569715	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000569715	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000450288	ENST00000262301		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
In-frame	ENST00000450288	ENST00000399843		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000450288	ENST00000543238		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-5UTR	ENST00000450288	ENST00000568897		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-intron	ENST00000450288	ENST00000568268		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
5CDS-3UTR	ENST00000450288	ENST00000539379		TCGA	RV	BRCA	TCGA-AN-A046-01A	PDXDC1	chr16	15102704	+	LMF1	chr16	943072	-
Frame-shit	ENST00000375799	ENST00000359600		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	PLEKHM2	chr1	16011113	+	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000375799	ENST00000464588		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	PLEKHM2	chr1	16011113	+	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000375793	ENST00000359600		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	PLEKHM2	chr1	16011113	+	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000375793	ENST00000464588		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	PLEKHM2	chr1	16011113	+	ZSWIM5	chr1	45553909	-
intron-3CDS	ENST00000477849	ENST00000359600		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	PLEKHM2	chr1	16011113	+	ZSWIM5	chr1	45553909	-
intron-5UTR	ENST00000477849	ENST00000464588		TCGA	RV	BRCA	TCGA-AC-A2FO-01A	PLEKHM2	chr1	16011113	+	ZSWIM5	chr1	45553909	-
5UTR-3CDS	ENST00000315249	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-intron	ENST00000315249	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-intron	ENST00000315249	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-3CDS	ENST00000580569	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000580569	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000580569	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-3CDS	ENST00000268850	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000268850	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000268850	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-3CDS	ENST00000378516	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000378516	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000378516	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-3CDS	ENST00000584655	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-intron	ENST00000584655	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-intron	ENST00000584655	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-3CDS	ENST00000394597	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000394597	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000394597	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-3CDS	ENST00000447669	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-intron	ENST00000447669	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
5UTR-intron	ENST00000447669	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-3CDS	ENST00000415395	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000415395	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000415395	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-3CDS	ENST00000413582	ENST00000407008		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000413582	ENST00000583517		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
intron-intron	ENST00000413582	ENST00000582037		TCGA	RV	BRCA	TCGA-3C-AALK-01A	RFFL	chr17	33416124	-	NLK	chr17	26495474	+
Frame-shit	ENST00000571816	ENST00000581006		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000571816	ENST00000498772		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000571816	ENST00000225609		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000571816	ENST00000395844		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000571816	ENST00000463810		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000572430	ENST00000581006		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000572430	ENST00000498772		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000572430	ENST00000225609		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000572430	ENST00000395844		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000572430	ENST00000463810		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262482	ENST00000581006		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262482	ENST00000498772		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262482	ENST00000225609		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262482	ENST00000395844		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000262482	ENST00000463810		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000575111	ENST00000581006		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000575111	ENST00000498772		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000575111	ENST00000225609		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000575111	ENST00000395844		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000575111	ENST00000463810		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000576229	ENST00000581006		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000576229	ENST00000498772		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000576229	ENST00000225609		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000576229	ENST00000395844		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000576229	ENST00000463810		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
3UTR-3CDS	ENST00000570492	ENST00000581006		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
3UTR-3CDS	ENST00000570492	ENST00000498772		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
3UTR-3CDS	ENST00000570492	ENST00000225609		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
3UTR-3CDS	ENST00000570492	ENST00000395844		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
3UTR-intron	ENST00000570492	ENST00000463810		TCGA	RV	BRCA	TCGA-A8-A0AB-01A	RNF167	chr17	4844452	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000590898	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5CDS-intron	ENST00000590898	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
In-frame	ENST00000399022	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5CDS-intron	ENST00000399022	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
Frame-shit	ENST00000337059	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5CDS-intron	ENST00000337059	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
Frame-shit	ENST00000357384	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5CDS-intron	ENST00000357384	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
In-frame	ENST00000588737	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5CDS-intron	ENST00000588737	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
In-frame	ENST00000319040	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5CDS-intron	ENST00000319040	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
intron-3CDS	ENST00000588459	ENST00000202677		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
intron-intron	ENST00000588459	ENST00000495793		TCGA	RV	BRCA	TCGA-AO-A12F-01A	RPRD1A	chr18	33610771	-	RALGAPA2	chr20	20661445	-
5UTR-3CDS	ENST00000479481	ENST00000370597		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5UTR-3CDS	ENST00000479481	ENST00000298819		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5UTR-3CDS	ENST00000479481	ENST00000370591		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5UTR-intron	ENST00000479481	ENST00000468549		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000370992	ENST00000370597		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000370992	ENST00000298819		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000370992	ENST00000370591		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5CDS-intron	ENST00000370992	ENST00000468549		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000536831	ENST00000370597		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000536831	ENST00000298819		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000536831	ENST00000370591		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5CDS-intron	ENST00000536831	ENST00000468549		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000315563	ENST00000370597		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000315563	ENST00000298819		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000315563	ENST00000370591		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5CDS-intron	ENST00000315563	ENST00000468549		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000414986	ENST00000370597		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000414986	ENST00000298819		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000414986	ENST00000370591		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
5CDS-intron	ENST00000414986	ENST00000468549		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RRP12	chr10	99132803	-	CRTAC1	chr10	99771094	-
In-frame	ENST00000367469	ENST00000350026		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367469	ENST00000346085		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367469	ENST00000367148		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367469	ENST00000275248		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
5CDS-intron	ENST00000367469	ENST00000478761		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367467	ENST00000350026		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367467	ENST00000346085		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367467	ENST00000367148		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000367467	ENST00000275248		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
5CDS-intron	ENST00000367467	ENST00000478761		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
intron-3CDS	ENST00000470750	ENST00000350026		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
intron-3CDS	ENST00000470750	ENST00000346085		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
intron-3CDS	ENST00000470750	ENST00000367148		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
intron-3CDS	ENST00000470750	ENST00000275248		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
intron-intron	ENST00000470750	ENST00000478761		TCGA	RV	BRCA	TCGA-E9-A1NF-01A	SASH1	chr6	148711398	+	ARID1B	chr6	157256600	+
In-frame	ENST00000402198	ENST00000157600		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000402198	ENST00000535732		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000402198	ENST00000454244		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000402198	ENST00000397386		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000402466	ENST00000157600		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000402466	ENST00000535732		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000402466	ENST00000454244		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000402466	ENST00000397386		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000406341	ENST00000157600		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000406341	ENST00000535732		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000406341	ENST00000454244		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000406341	ENST00000397386		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000407969	ENST00000157600		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000407969	ENST00000535732		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000407969	ENST00000454244		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000407969	ENST00000397386		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000302463	ENST00000157600		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
In-frame	ENST00000302463	ENST00000535732		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000302463	ENST00000454244		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000302463	ENST00000397386		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
intron-3CDS	ENST00000488236	ENST00000157600		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
intron-3CDS	ENST00000488236	ENST00000535732		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
intron-intron	ENST00000488236	ENST00000454244		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
intron-5UTR	ENST00000488236	ENST00000397386		TCGA	RV	BRCA	TCGA-LL-A8F5-01A	SETD5	chr3	9483929	+	LMCD1	chr3	8574423	+
Frame-shit	ENST00000336915	ENST00000353782		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000336915	ENST00000356608		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000336915	ENST00000394747		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000336915	ENST00000394748		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000336915	ENST00000537808		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000336915	ENST00000565329		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000584924	ENST00000353782		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000584924	ENST00000356608		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000584924	ENST00000394747		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
Frame-shit	ENST00000584924	ENST00000394748		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
5CDS-intron	ENST00000584924	ENST00000537808		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
5CDS-5UTR	ENST00000584924	ENST00000565329		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	SKAP1	chr17	46423267	-	ABCC11	chr16	48211024	-
intron-3CDS	ENST00000304363	ENST00000599117		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000304363	ENST00000432763		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000304363	ENST00000402194		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000304363	ENST00000359191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000304363	ENST00000598725		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000401547	ENST00000599117		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000401547	ENST00000432763		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000401547	ENST00000402194		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000401547	ENST00000359191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
intron-3CDS	ENST00000401547	ENST00000598725		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000405515	ENST00000599117		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000405515	ENST00000432763		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000405515	ENST00000402194		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000405515	ENST00000359191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000405515	ENST00000598725		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402789	ENST00000599117		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402789	ENST00000432763		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402789	ENST00000402194		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402789	ENST00000359191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402789	ENST00000598725		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402185	ENST00000599117		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402185	ENST00000432763		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402185	ENST00000402194		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402185	ENST00000359191		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
5UTR-3CDS	ENST00000402185	ENST00000598725		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	SUV420H1	chr11	67980944	-	SUPT5H	chr19	39955438	+
In-frame	ENST00000252996	ENST00000396153		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
In-frame	ENST00000252996	ENST00000371778		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
In-frame	ENST00000252996	ENST00000545823		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
5CDS-5UTR	ENST00000252996	ENST00000472808		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
5UTR-3CDS	ENST00000609045	ENST00000396153		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
5UTR-3CDS	ENST00000609045	ENST00000371778		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
5UTR-3CDS	ENST00000609045	ENST00000545823		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
5UTR-5UTR	ENST00000609045	ENST00000472808		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	TAF4	chr20	60587871	-	FAF1	chr1	51050483	-
5CDS-intron	ENST00000263346	ENST00000564878		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
5CDS-intron	ENST00000263346	ENST00000393062		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
5CDS-intron	ENST00000263346	ENST00000378247		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
5CDS-intron	ENST00000263346	ENST00000563972		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000563406	ENST00000564878		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000563406	ENST00000393062		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000563406	ENST00000378247		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000563406	ENST00000563972		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000263347	ENST00000564878		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000263347	ENST00000393062		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000263347	ENST00000378247		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000263347	ENST00000563972		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	TCF25	chr16	89940267	+	SPIRE2	chr16	89934597	+
intron-intron	ENST00000379056	ENST00000311028		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000395923		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000220931		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000521599		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000522951		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000519508		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000521371		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000311028		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000395923		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000220931		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000521599		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000522951		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000519508		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000521371		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000311028		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000395923		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000220931		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000521599		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000522951		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000519508		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000521371		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000311028		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000395923		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000220931		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000521599		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000522951		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000519508		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000521371		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000311028		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000395923		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000220931		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000521599		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000522951		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000519508		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000521371		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000311028		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000395923		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000220931		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000521599		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000522951		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000519508		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000521371		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-5UTR	ENST00000398571	ENST00000492039		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
5CDS-5UTR	ENST00000398571	ENST00000295121		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
5CDS-5UTR	ENST00000398571	ENST00000406245		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
5CDS-5UTR	ENST00000398571	ENST00000409164		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
intron-5UTR	ENST00000472689	ENST00000492039		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
intron-5UTR	ENST00000472689	ENST00000295121		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
intron-5UTR	ENST00000472689	ENST00000406245		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
intron-5UTR	ENST00000472689	ENST00000409164		TCGA	RV	BRCA	TCGA-E2-A1II-01A	USP34	chr2	61697785	-	WDR92	chr2	68374699	-
Frame-shit	ENST00000211936	ENST00000359314		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	ZNF184	chr6	27435632	-	CD2AP	chr6	47501338	+
5CDS-intron	ENST00000211936	ENST00000486693		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	ZNF184	chr6	27435632	-	CD2AP	chr6	47501338	+
Frame-shit	ENST00000377419	ENST00000359314		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	ZNF184	chr6	27435632	-	CD2AP	chr6	47501338	+
5CDS-intron	ENST00000377419	ENST00000486693		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	ZNF184	chr6	27435632	-	CD2AP	chr6	47501338	+
5UTR-intron	ENST00000396029	ENST00000237527		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
5UTR-5UTR	ENST00000396029	ENST00000373614		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
5UTR-intron	ENST00000396029	ENST00000373611		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
5UTR-intron	ENST00000396032	ENST00000237527		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
5UTR-5UTR	ENST00000396032	ENST00000373614		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
5UTR-intron	ENST00000396032	ENST00000373611		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
intron-intron	ENST00000371602	ENST00000237527		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
intron-5UTR	ENST00000371602	ENST00000373614		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
intron-intron	ENST00000371602	ENST00000373611		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
intron-intron	ENST00000349014	ENST00000237527		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
intron-5UTR	ENST00000349014	ENST00000373614		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
intron-intron	ENST00000349014	ENST00000373611		TCGA	RV	BRCA	TCGA-A1-A0SJ-01A	ADNP	chr20	49547363	-	GHRH	chr20	35885311	-
5CDS-5UTR	ENST00000306107	ENST00000592694		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000337679		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000392124		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000339413		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000592246		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000329420		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000591784		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000591755		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000306107	ENST00000587361		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000592694		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000337679		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000392124		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000339413		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000592246		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000329420		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000591784		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000591755		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000472644	ENST00000587361		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000592694		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000337679		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000392124		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000339413		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000592246		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000329420		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000591784		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000591755		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000481337	ENST00000587361		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000592694		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000337679		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000392124		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000339413		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000592246		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000329420		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000591784		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000591755		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000486979	ENST00000587361		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000592694		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000337679		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000392124		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000339413		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000592246		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000329420		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000591784		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000591755		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000389927	ENST00000587361		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	ALCAM	chr3	105086325	+	YIF1B	chr19	38800283	-
In-frame	ENST00000356401	ENST00000446256		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000356401	ENST00000445061		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000356401	ENST00000476446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000356401	ENST00000348968		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000356401	ENST00000457607		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000449376	ENST00000446256		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000449376	ENST00000445061		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000449376	ENST00000476446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000449376	ENST00000348968		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000449376	ENST00000457607		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-3CDS	ENST00000490095	ENST00000446256		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-3CDS	ENST00000490095	ENST00000445061		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-intron	ENST00000490095	ENST00000476446		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-intron	ENST00000490095	ENST00000348968		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-intron	ENST00000490095	ENST00000457607		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
Frame-shit	ENST00000589222	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000589222	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000589222	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000589222	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000407086	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000407086	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000407086	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000407086	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000390652	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000390652	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000390652	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000390652	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000408905	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000408905	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000408905	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000408905	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000588462	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000588462	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000588462	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
5CDS-intron	ENST00000588462	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-3CDS	ENST00000585744	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-3CDS	ENST00000585744	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-intron	ENST00000585744	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-intron	ENST00000585744	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-3CDS	ENST00000588874	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-3CDS	ENST00000588874	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-intron	ENST00000588874	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-intron	ENST00000588874	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-3CDS	ENST00000585812	ENST00000583539		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-3CDS	ENST00000585812	ENST00000337432		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-intron	ENST00000585812	ENST00000487921		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
intron-intron	ENST00000585812	ENST00000421782		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	58885437	+	RAD51C	chr17	56801401	+
Frame-shit	ENST00000261721	ENST00000300057		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	BTBD1	chr15	83710480	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000261721	ENST00000559894		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	BTBD1	chr15	83710480	-	MESP1	chr15	90293458	-
Frame-shit	ENST00000379403	ENST00000300057		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	BTBD1	chr15	83710480	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000379403	ENST00000559894		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	BTBD1	chr15	83710480	-	MESP1	chr15	90293458	-
5UTR-3CDS	ENST00000560015	ENST00000300057		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	BTBD1	chr15	83710480	-	MESP1	chr15	90293458	-
5UTR-5UTR	ENST00000560015	ENST00000559894		TCGA	RV	BRCA	TCGA-BH-A0BP-01A	BTBD1	chr15	83710480	-	MESP1	chr15	90293458	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13G-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000533988	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
intron-intron	ENST00000533988	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000524490	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000524490	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000334736	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000334736	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000343878	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000343878	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
intron-3CDS	ENST00000525959	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
intron-intron	ENST00000525959	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000533248	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000533248	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000525919	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000525919	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000524767	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000524767	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000525038	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000525038	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
Frame-shit	ENST00000529032	ENST00000294304		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
5CDS-intron	ENST00000529032	ENST00000529481		TCGA	RV	BRCA	TCGA-LD-A7W6-01A	C11orf30	chr11	76175124	+	LRP5	chr11	68153784	+
In-frame	ENST00000261769	ENST00000308744		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000261769	ENST00000344413		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
In-frame	ENST00000261769	ENST00000395999		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
In-frame	ENST00000261769	ENST00000358749		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
5CDS-intron	ENST00000261769	ENST00000506359		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
In-frame	ENST00000422392	ENST00000308744		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
Frame-shit	ENST00000422392	ENST00000344413		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
In-frame	ENST00000422392	ENST00000395999		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
In-frame	ENST00000422392	ENST00000358749		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
5CDS-intron	ENST00000422392	ENST00000506359		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000562836	ENST00000308744		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000562836	ENST00000344413		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000562836	ENST00000395999		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
intron-3CDS	ENST00000562836	ENST00000358749		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
intron-intron	ENST00000562836	ENST00000506359		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	CDH1	chr16	68772314	+	NPFFR2	chr4	73003757	+
In-frame	ENST00000286648	ENST00000254799		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000286648	ENST00000439371		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000286648	ENST00000502323		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000286648	ENST00000545193		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000286648	ENST00000508091		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
In-frame	ENST00000504952	ENST00000254799		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504952	ENST00000439371		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504952	ENST00000502323		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504952	ENST00000545193		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504952	ENST00000508091		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
In-frame	ENST00000504730	ENST00000254799		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504730	ENST00000439371		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504730	ENST00000502323		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504730	ENST00000545193		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
5CDS-5UTR	ENST00000504730	ENST00000508091		TCGA	RV	BRCA	TCGA-BH-A1F2-01A	DCK	chr4	71863899	+	GRSF1	chr4	71702031	-
In-frame	ENST00000399151	ENST00000300482		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
In-frame	ENST00000399151	ENST00000397928		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
In-frame	ENST00000399151	ENST00000397932		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
In-frame	ENST00000399151	ENST00000300481		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
5CDS-3UTR	ENST00000399151	ENST00000498430		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
3UTR-3CDS	ENST00000492760	ENST00000300482		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
3UTR-3CDS	ENST00000492760	ENST00000397928		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
3UTR-3CDS	ENST00000492760	ENST00000397932		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
3UTR-3CDS	ENST00000492760	ENST00000300481		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
3UTR-3UTR	ENST00000492760	ENST00000498430		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	DOPEY2	chr21	37537169	+	TRPM2	chr21	45825025	+
In-frame	ENST00000220325	ENST00000350221		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	EHD4	chr15	42211408	-	FSIP1	chr15	39910446	-
5CDS-intron	ENST00000220325	ENST00000559692		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	EHD4	chr15	42211408	-	FSIP1	chr15	39910446	-
5UTR-3CDS	ENST00000230449	ENST00000309415		TCGA	RV	BRCA	TCGA-C8-A12U-01A	EXOC2	chr6	693019	-	SH3RF3	chr2	109964130	+
5UTR-3CDS	ENST00000448181	ENST00000309415		TCGA	RV	BRCA	TCGA-C8-A12U-01A	EXOC2	chr6	693019	-	SH3RF3	chr2	109964130	+
5UTR-3CDS	ENST00000475028	ENST00000309415		TCGA	RV	BRCA	TCGA-C8-A12U-01A	EXOC2	chr6	693019	-	SH3RF3	chr2	109964130	+
Frame-shit	ENST00000425967	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000425967	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000425967	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000425967	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000425967	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397091	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397091	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397091	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000397091	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000397091	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000447712	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000447712	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000447712	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000447712	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000447712	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000341462	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000341462	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000341462	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000341462	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000341462	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000532791	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000532791	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000532791	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000532791	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000532791	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397113	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397113	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397113	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000397113	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000397113	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000356207	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000356207	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000356207	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000356207	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000356207	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5UTR-3CDS	ENST00000335922	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5UTR-3CDS	ENST00000335922	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5UTR-3CDS	ENST00000335922	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5UTR-5UTR	ENST00000335922	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5UTR-intron	ENST00000335922	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000326324	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000326324	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000326324	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000326324	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000326324	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
In-frame	ENST00000397103	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
In-frame	ENST00000397103	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
In-frame	ENST00000397103	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000397103	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000397103	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397108	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397108	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
Frame-shit	ENST00000397108	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000397108	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000397108	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000496629	ENST00000265707		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000496629	ENST00000379866		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000496629	ENST00000520772		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
intron-5UTR	ENST00000496629	ENST00000541111		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
intron-intron	ENST00000496629	ENST00000523755		TCGA	RV	BRCA	TCGA-E2-A574-01A	FGFR1	chr8	38314874	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000482812	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000482812	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000482812	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000482812	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000482812	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-intron	ENST00000482812	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000430044	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000430044	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000430044	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000430044	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000430044	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
5CDS-intron	ENST00000430044	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000452146	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000452146	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000452146	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000452146	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000452146	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
5CDS-intron	ENST00000452146	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000434507	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000434507	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000434507	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000434507	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000434507	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
5CDS-intron	ENST00000434507	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000415421	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000415421	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000415421	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000415421	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000415421	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-intron	ENST00000415421	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000320311	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000320311	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000320311	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000320311	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
In-frame	ENST00000320311	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
5CDS-intron	ENST00000320311	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000422997	ENST00000287878		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000422997	ENST00000418337		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000422997	ENST00000433631		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000422997	ENST00000492843		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-3CDS	ENST00000422997	ENST00000392801		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
intron-intron	ENST00000422997	ENST00000461529		TCGA	RV	BRCA	TCGA-AO-A12E-01A	GALNT11	chr7	151810483	+	PRKAG2	chr7	151262971	-
Frame-shit	ENST00000541565	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000541565	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000413764	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000413764	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000391905	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000391905	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000537898	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000537898	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000545154	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000545154	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000545781	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000545781	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000308852	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000308852	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000261458	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000261458	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000367010	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000367010	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000367009	ENST00000367669		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000367009	ENST00000308769		TCGA	RV	BRCA	TCGA-S3-A6ZG-01A	HHAT	chr1	210797014	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000356956	ENST00000535787		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
Frame-shit	ENST00000356956	ENST00000241416		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
Frame-shit	ENST00000356956	ENST00000404590		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
5CDS-intron	ENST00000356956	ENST00000495775		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
intron-3CDS	ENST00000475584	ENST00000535787		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
intron-3CDS	ENST00000475584	ENST00000241416		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
intron-3CDS	ENST00000475584	ENST00000404590		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
intron-intron	ENST00000475584	ENST00000495775		TCGA	RV	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160390427	+	ACVR2A	chr2	148672760	+
Frame-shit	ENST00000458385	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000458385	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000458385	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
5CDS-5UTR	ENST00000458385	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000514798	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000514798	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000514798	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
5CDS-5UTR	ENST00000514798	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000296775	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000296775	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000296775	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
5CDS-5UTR	ENST00000296775	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
intron-3CDS	ENST00000502992	ENST00000393540		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
intron-3CDS	ENST00000502992	ENST00000307588		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
intron-3CDS	ENST00000502992	ENST00000510617		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
intron-5UTR	ENST00000502992	ENST00000507501		TCGA	RV	BRCA	TCGA-E2-A15E-06A	KIAA1430	chr4	186096940	-	CCDC110	chr4	186383862	-
Frame-shit	ENST00000535458	ENST00000336915		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000535458	ENST00000584924		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000290158	ENST00000336915		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000290158	ENST00000584924		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000540627	ENST00000336915		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000540627	ENST00000584924		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000537679	ENST00000336915		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
Frame-shit	ENST00000537679	ENST00000584924		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
intron-3CDS	ENST00000577918	ENST00000336915		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
intron-3CDS	ENST00000577918	ENST00000584924		TCGA	RV	BRCA	TCGA-D8-A27G-01A	KPNB1	chr17	45748198	+	SKAP1	chr17	46239931	-
In-frame	ENST00000409947	ENST00000295321		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128093446	-	IWS1	chr2	128238751	-
5CDS-intron	ENST00000409947	ENST00000455721		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128093446	-	IWS1	chr2	128238751	-
5CDS-intron	ENST00000409947	ENST00000486662		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128093446	-	IWS1	chr2	128238751	-
Frame-shit	ENST00000344908	ENST00000295321		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128093446	-	IWS1	chr2	128238751	-
5CDS-intron	ENST00000344908	ENST00000455721		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128093446	-	IWS1	chr2	128238751	-
5CDS-intron	ENST00000344908	ENST00000486662		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	MAP3K2	chr2	128093446	-	IWS1	chr2	128238751	-
Frame-shit	ENST00000393119	ENST00000262013		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000393119	ENST00000505279		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000393119	ENST00000357122		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000393119	ENST00000509724		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000393119	ENST00000510283		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
Frame-shit	ENST00000313863	ENST00000262013		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000313863	ENST00000505279		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000313863	ENST00000357122		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000313863	ENST00000509724		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000313863	ENST00000510283		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
Frame-shit	ENST00000337050	ENST00000262013		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000337050	ENST00000505279		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000337050	ENST00000357122		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000337050	ENST00000509724		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000337050	ENST00000510283		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
Frame-shit	ENST00000537529	ENST00000262013		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000537529	ENST00000505279		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000537529	ENST00000357122		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000537529	ENST00000509724		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000537529	ENST00000510283		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
In-frame	ENST00000546108	ENST00000262013		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000546108	ENST00000505279		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000546108	ENST00000357122		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000546108	ENST00000509724		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
5CDS-intron	ENST00000546108	ENST00000510283		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	MKS1	chr17	56288020	-	SPAG9	chr17	49109083	-
intron-3CDS	ENST00000405201	ENST00000296181		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-intron	ENST00000405201	ENST00000461306		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-3CDS	ENST00000404621	ENST00000296181		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-intron	ENST00000404621	ENST00000461306		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-3CDS	ENST00000404121	ENST00000296181		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-intron	ENST00000404121	ENST00000461306		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-3CDS	ENST00000356219	ENST00000296181		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-intron	ENST00000356219	ENST00000461306		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-3CDS	ENST00000397355	ENST00000296181		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-intron	ENST00000397355	ENST00000461306		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-3CDS	ENST00000429285	ENST00000296181		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
intron-intron	ENST00000429285	ENST00000461306		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	NCOR2	chr12	125002686	-	ITGB5	chr3	124528003	-
In-frame	ENST00000581006	ENST00000437605		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000581006	ENST00000579428		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
5CDS-intron	ENST00000581006	ENST00000583620		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000498772	ENST00000437605		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000498772	ENST00000579428		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
5CDS-intron	ENST00000498772	ENST00000583620		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000225609	ENST00000437605		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000225609	ENST00000579428		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
5CDS-intron	ENST00000225609	ENST00000583620		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000395844	ENST00000437605		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000395844	ENST00000579428		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
5CDS-intron	ENST00000395844	ENST00000583620		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
intron-3CDS	ENST00000463810	ENST00000437605		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
intron-3CDS	ENST00000463810	ENST00000579428		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
intron-intron	ENST00000463810	ENST00000583620		TCGA	RV	BRCA	TCGA-E2-A14P-01A	PIGL	chr17	16137384	+	TBC1D26	chr17	15643414	+
In-frame	ENST00000377242	ENST00000367255		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000356820		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000423061		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000448038		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000341594		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000265368		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000367253		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000367248		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000413186		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000466159		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000539504		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000347037		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000354674		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377242	ENST00000495090		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
In-frame	ENST00000377252	ENST00000367255		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000356820		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000423061		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000448038		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000341594		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000265368		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000367253		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000367248		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000413186		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000466159		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000539504		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000347037		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000354674		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
5CDS-intron	ENST00000377252	ENST00000495090		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-3CDS	ENST00000377238	ENST00000367255		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000356820		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000423061		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000448038		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000341594		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000265368		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000367253		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000367248		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000413186		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000466159		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000539504		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000347037		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000354674		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-intron	ENST00000377238	ENST00000495090		TCGA	RV	BRCA	TCGA-A8-A07R-01A	PLXDC2	chr10	20290915	+	SYNE1	chr6	152793548	-
intron-3CDS	ENST00000487990	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000487990	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000487990	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000487990	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000487990	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000487990	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000487990	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000487990	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000399272	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000399272	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000399272	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000399272	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000399272	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000399272	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000399272	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000399272	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000489903	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000489903	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000489903	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000489903	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000489903	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000489903	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000489903	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000489903	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000313806	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000313806	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000313806	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000313806	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000313806	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000313806	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000313806	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000313806	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000443408	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000443408	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000443408	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000443408	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000443408	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000443408	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000443408	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000443408	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000482533	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000482533	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000482533	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000482533	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000482533	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000482533	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000482533	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000482533	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000481448	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000481448	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000481448	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000481448	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000481448	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000481448	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000481448	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000481448	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381132	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381132	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381132	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381132	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381132	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000381132	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000381132	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000381132	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381135	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381135	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381135	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381135	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000381135	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000381135	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000381135	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000381135	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000492600	ENST00000344691		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000492600	ENST00000325074		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000492600	ENST00000437180		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000492600	ENST00000300305		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000492600	ENST00000399240		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000492600	ENST00000486278		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000492600	ENST00000494829		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
intron-intron	ENST00000492600	ENST00000358356		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36171759	-
In-frame	ENST00000361756	ENST00000301765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	RNF121	chr11	71671937	+	VPS37C	chr11	60901679	-
In-frame	ENST00000533380	ENST00000301765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	RNF121	chr11	71671937	+	VPS37C	chr11	60901679	-
In-frame	ENST00000393713	ENST00000301765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	RNF121	chr11	71671937	+	VPS37C	chr11	60901679	-
3UTR-3CDS	ENST00000490867	ENST00000301765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	RNF121	chr11	71671937	+	VPS37C	chr11	60901679	-
5UTR-3CDS	ENST00000545854	ENST00000301765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	RNF121	chr11	71671937	+	VPS37C	chr11	60901679	-
In-frame	ENST00000530137	ENST00000301765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	RNF121	chr11	71671937	+	VPS37C	chr11	60901679	-
5UTR-3CDS	ENST00000336308	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-5UTR	ENST00000336308	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
3UTR-3CDS	ENST00000578232	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
3UTR-5UTR	ENST00000578232	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-3CDS	ENST00000544210	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-5UTR	ENST00000544210	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-3CDS	ENST00000394250	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-5UTR	ENST00000394250	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-3CDS	ENST00000580611	ENST00000592554		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
5UTR-5UTR	ENST00000580611	ENST00000226094		TCGA	RV	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37793484	+	FAM20A	chr17	66548092	-
In-frame	ENST00000369902	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000369902	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
In-frame	ENST00000369899	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000369899	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
In-frame	ENST00000423559	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000423559	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
intron-3CDS	ENST00000471000	ENST00000369983		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
intron-intron	ENST00000471000	ENST00000476019		TCGA	RV	BRCA	TCGA-E2-A15E-06A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
Frame-shit	ENST00000393792	ENST00000519643		TCGA	RV	BRCA	TCGA-C8-A137-01A	UBTD2	chr5	171661126	-	SH3PXD2B	chr5	171809131	-
Frame-shit	ENST00000393792	ENST00000311601		TCGA	RV	BRCA	TCGA-C8-A137-01A	UBTD2	chr5	171661126	-	SH3PXD2B	chr5	171809131	-
5CDS-intron	ENST00000393792	ENST00000523651		TCGA	RV	BRCA	TCGA-C8-A137-01A	UBTD2	chr5	171661126	-	SH3PXD2B	chr5	171809131	-
5UTR-5UTR	ENST00000541043	ENST00000381137		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000541043	ENST00000388918		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000541043	ENST00000381136		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000541043	ENST00000473504		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000379923	ENST00000381137		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000379923	ENST00000388918		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000379923	ENST00000381136		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000379923	ENST00000473504		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000309951	ENST00000381137		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000309951	ENST00000388918		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000309951	ENST00000381136		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000309951	ENST00000473504		TCGA	RV	BRCA	TCGA-OL-A5RY-01A	ACO1	chr9	32384733	+	TYRP1	chr9	12693912	+
intron-intron	ENST00000434909	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000434909	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000434909	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000434909	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000434909	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509504	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509504	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509504	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509504	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509504	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000311813	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000311813	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000311813	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000311813	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000311813	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000482461	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000482461	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000482461	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000482461	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000482461	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000441328	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000441328	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000441328	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000441328	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000441328	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409899	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409899	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409899	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409899	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409899	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409611	ENST00000264818		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409611	ENST00000524462		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409611	ENST00000525621		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409611	ENST00000529370		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409611	ENST00000529422		TCGA	RV	BRCA	TCGA-A2-A3XY-01A	AQP1	chr7	30965131	+	TYK2	chr19	10491352	-
Frame-shit	ENST00000589222	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000589222	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000589222	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
Frame-shit	ENST00000407086	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000407086	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000407086	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
Frame-shit	ENST00000390652	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000390652	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000390652	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
Frame-shit	ENST00000408905	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000408905	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000408905	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
Frame-shit	ENST00000588462	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000588462	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
5CDS-5UTR	ENST00000588462	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-3CDS	ENST00000585744	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-5UTR	ENST00000585744	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-5UTR	ENST00000585744	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-3CDS	ENST00000588874	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-5UTR	ENST00000588874	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-5UTR	ENST00000588874	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-3CDS	ENST00000585812	ENST00000262139		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-5UTR	ENST00000585812	ENST00000589459		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
intron-5UTR	ENST00000585812	ENST00000546360		TCGA	RV	BRCA	TCGA-E9-A1NA-01A	BCAS3	chr17	58885437	+	WIPI1	chr17	66432620	-
3UTR-intron	ENST00000331595	ENST00000443149		TCGA	RV	BRCA	TCGA-E2-A1BD-01A	BGN	chrX	152775004	+	KIAA2026	chr9	5954095	-
3UTR-intron	ENST00000331595	ENST00000399933		TCGA	RV	BRCA	TCGA-E2-A1BD-01A	BGN	chrX	152775004	+	KIAA2026	chr9	5954095	-
3UTR-intron	ENST00000331595	ENST00000381461		TCGA	RV	BRCA	TCGA-E2-A1BD-01A	BGN	chrX	152775004	+	KIAA2026	chr9	5954095	-
5CDS-intron	ENST00000480756	ENST00000443149		TCGA	RV	BRCA	TCGA-E2-A1BD-01A	BGN	chrX	152775004	+	KIAA2026	chr9	5954095	-
5CDS-intron	ENST00000480756	ENST00000399933		TCGA	RV	BRCA	TCGA-E2-A1BD-01A	BGN	chrX	152775004	+	KIAA2026	chr9	5954095	-
5CDS-intron	ENST00000480756	ENST00000381461		TCGA	RV	BRCA	TCGA-E2-A1BD-01A	BGN	chrX	152775004	+	KIAA2026	chr9	5954095	-
Frame-shit	ENST00000300452	ENST00000475805		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000300452	ENST00000341179		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000300452	ENST00000372923		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000300452	ENST00000393594		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000300452	ENST00000486160		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
5CDS-intron	ENST00000300452	ENST00000493925		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000609948	ENST00000475805		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000609948	ENST00000341179		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000609948	ENST00000372923		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000609948	ENST00000393594		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000609948	ENST00000486160		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
5CDS-intron	ENST00000609948	ENST00000493925		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000608951	ENST00000475805		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000608951	ENST00000341179		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000608951	ENST00000372923		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000608951	ENST00000393594		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000608951	ENST00000486160		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
5CDS-intron	ENST00000608951	ENST00000493925		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000372875	ENST00000475805		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000372875	ENST00000341179		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000372875	ENST00000372923		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000372875	ENST00000393594		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
Frame-shit	ENST00000372875	ENST00000486160		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
5CDS-intron	ENST00000372875	ENST00000493925		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
intron-3CDS	ENST00000461102	ENST00000475805		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
intron-3CDS	ENST00000461102	ENST00000341179		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
intron-3CDS	ENST00000461102	ENST00000372923		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
intron-3CDS	ENST00000461102	ENST00000393594		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
intron-3CDS	ENST00000461102	ENST00000486160		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
intron-intron	ENST00000461102	ENST00000493925		TCGA	RV	BRCA	TCGA-D8-A27H-01A	COQ4	chr9	131085426	+	DNM1	chr9	131012394	+
5UTR-3UTR	ENST00000578681	ENST00000577702		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000578681	ENST00000310827		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000578681	ENST00000431926		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-intron	ENST00000578681	ENST00000415273		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000583590	ENST00000577702		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000583590	ENST00000310827		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000583590	ENST00000431926		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-intron	ENST00000583590	ENST00000415273		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000359353	ENST00000577702		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000359353	ENST00000310827		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000359353	ENST00000431926		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-intron	ENST00000359353	ENST00000415273		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000389924	ENST00000577702		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000389924	ENST00000310827		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3UTR	ENST00000389924	ENST00000431926		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-intron	ENST00000389924	ENST00000415273		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000457800	ENST00000577702		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000457800	ENST00000310827		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000457800	ENST00000431926		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-intron	ENST00000457800	ENST00000415273		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000582985	ENST00000577702		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000582985	ENST00000310827		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000582985	ENST00000431926		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
intron-intron	ENST00000582985	ENST00000415273		TCGA	RV	BRCA	TCGA-AN-A0FW-01A	DDX42	chr17	61851736	+	DCAF7	chr17	61655831	+
5UTR-3CDS	ENST00000473039	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473039	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473039	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473039	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-intron	ENST00000473039	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373624	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373624	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373624	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373624	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000373624	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000542603	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000542603	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000542603	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000542603	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-intron	ENST00000542603	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000394219	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000394219	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000394219	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000394219	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000394219	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373620	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373620	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373620	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
In-frame	ENST00000373620	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000373620	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000394215	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000394215	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000394215	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000394215	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000394215	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000373618	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000373618	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000373618	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
Frame-shit	ENST00000373618	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000373618	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	DENND1A	chr9	126414292	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473039	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5UTR-3CDS	ENST00000473039	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5UTR-intron	ENST00000473039	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
In-frame	ENST00000373624	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000373624	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000373624	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
intron-3CDS	ENST00000542603	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
intron-3CDS	ENST00000542603	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
intron-intron	ENST00000542603	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
In-frame	ENST00000394219	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000394219	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000394219	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
In-frame	ENST00000373620	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000373620	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000373620	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000394215	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
In-frame	ENST00000394215	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000394215	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000373618	ENST00000343709		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
In-frame	ENST00000373618	ENST00000448384		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000373618	ENST00000521519		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000511689	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000511689	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5CDS-3UTR	ENST00000511689	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5UTR-3CDS	ENST00000512507	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5UTR-3CDS	ENST00000512507	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5UTR-3UTR	ENST00000512507	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000304332	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000304332	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5CDS-3UTR	ENST00000304332	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000312469	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000312469	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3UTR	ENST00000312469	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000423969	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000423969	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3UTR	ENST00000423969	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
In-frame	ENST00000510038	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
In-frame	ENST00000510038	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5CDS-3UTR	ENST00000510038	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-01A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
In-frame	ENST00000316485	ENST00000371073		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
In-frame	ENST00000316485	ENST00000290039		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
5CDS-3UTR	ENST00000316485	ENST00000495994		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
In-frame	ENST00000371158	ENST00000371073		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
In-frame	ENST00000371158	ENST00000290039		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
5CDS-3UTR	ENST00000371158	ENST00000495994		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3CDS	ENST00000543708	ENST00000371073		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3CDS	ENST00000543708	ENST00000290039		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3UTR	ENST00000543708	ENST00000495994		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3CDS	ENST00000545929	ENST00000371073		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3CDS	ENST00000545929	ENST00000290039		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3UTR	ENST00000545929	ENST00000495994		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3CDS	ENST00000472512	ENST00000371073		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3CDS	ENST00000472512	ENST00000290039		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
intron-3UTR	ENST00000472512	ENST00000495994		TCGA	RV	BRCA	TCGA-A8-A06R-01A	INADL	chr1	62393501	+	CACHD1	chr1	65113484	+
In-frame	ENST00000306052	ENST00000583539		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000306052	ENST00000337432		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000306052	ENST00000487921		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000306052	ENST00000421782		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000371454	ENST00000583539		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000371454	ENST00000337432		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000371454	ENST00000487921		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000371454	ENST00000421782		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
Frame-shit	ENST00000465675	ENST00000583539		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
Frame-shit	ENST00000465675	ENST00000337432		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000465675	ENST00000487921		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000465675	ENST00000421782		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000354412	ENST00000583539		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000354412	ENST00000337432		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000354412	ENST00000487921		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000354412	ENST00000421782		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000347547	ENST00000583539		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
In-frame	ENST00000347547	ENST00000337432		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000347547	ENST00000487921		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000347547	ENST00000421782		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000460214	ENST00000583539		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000460214	ENST00000337432		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000460214	ENST00000487921		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000460214	ENST00000421782		TCGA	RV	BRCA	TCGA-A8-A08F-01A	LRP8	chr1	53720789	-	RAD51C	chr17	56772292	+
5UTR-3CDS	ENST00000261845	ENST00000538159		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MAPK6	chr15	52311573	+	USO1	chr4	76731585	+
5UTR-3CDS	ENST00000261845	ENST00000514213		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MAPK6	chr15	52311573	+	USO1	chr4	76731585	+
intron-3CDS	ENST00000558841	ENST00000538159		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MAPK6	chr15	52311573	+	USO1	chr4	76731585	+
intron-3CDS	ENST00000558841	ENST00000514213		TCGA	RV	BRCA	TCGA-C8-A12P-01A	MAPK6	chr15	52311573	+	USO1	chr4	76731585	+
intron-3CDS	ENST00000509990	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000509990	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000509990	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-3CDS	ENST00000361059	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000361059	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000361059	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-3CDS	ENST00000504203	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000504203	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000504203	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-3CDS	ENST00000502929	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000502929	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000502929	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-3CDS	ENST00000394800	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000394800	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000394800	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-3CDS	ENST00000507197	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000507197	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
intron-intron	ENST00000507197	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-3CDS	ENST00000394805	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000394805	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000394805	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-3CDS	ENST00000502499	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000502499	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000502499	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-3CDS	ENST00000510056	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000510056	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000510056	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-3CDS	ENST00000503811	ENST00000526136		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000503811	ENST00000378132		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5UTR-intron	ENST00000503811	ENST00000520672		TCGA	RV	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA2	chr5	140358534	+
5CDS-5UTR	ENST00000377122	ENST00000402508		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000403359		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000316377		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000480038		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000378314		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377122	ENST00000405808		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377122	ENST00000434523		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000402508		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000403359		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000316377		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000480038		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000378314		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000417816	ENST00000405808		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000417816	ENST00000434523		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000402508		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000403359		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000316377		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000480038		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000378314		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000377159	ENST00000405808		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000377159	ENST00000434523		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000402508		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000403359		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000316377		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000480038		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000378314		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377119	ENST00000405808		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377119	ENST00000434523		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000402508		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000403359		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000316377		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000480038		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000378314		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000464278	ENST00000405808		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000464278	ENST00000434523		TCGA	RV	BRCA	TCGA-A7-A13D-01B	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
In-frame	ENST00000437198	ENST00000198767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000437198	ENST00000563559		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000437198	ENST00000429751		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000437198	ENST00000327307		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000437198	ENST00000540462		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000437198	ENST00000564131		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000420015	ENST00000198767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000420015	ENST00000563559		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000420015	ENST00000429751		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000420015	ENST00000327307		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000420015	ENST00000540462		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
In-frame	ENST00000420015	ENST00000564131		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
Frame-shit	ENST00000341484	ENST00000198767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
Frame-shit	ENST00000341484	ENST00000563559		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
Frame-shit	ENST00000341484	ENST00000429751		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
Frame-shit	ENST00000341484	ENST00000327307		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
Frame-shit	ENST00000341484	ENST00000540462		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
Frame-shit	ENST00000341484	ENST00000564131		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000539279	ENST00000198767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000539279	ENST00000563559		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000539279	ENST00000429751		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000539279	ENST00000327307		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000539279	ENST00000540462		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000539279	ENST00000564131		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000566021	ENST00000198767		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000566021	ENST00000563559		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000566021	ENST00000429751		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000566021	ENST00000327307		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000566021	ENST00000540462		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
intron-3CDS	ENST00000566021	ENST00000564131		TCGA	RV	BRCA	TCGA-A7-A13D-01A	PARN	chr16	14711447	-	RRN3	chr16	15178562	-
5CDS-5UTR	ENST00000299468	ENST00000396526		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000299468	ENST00000396534		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000299468	ENST00000362031		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000299468	ENST00000355110		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000369758	ENST00000396526		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000369758	ENST00000396534		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000369758	ENST00000362031		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000369758	ENST00000355110		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000609372	ENST00000396526		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000609372	ENST00000396534		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000609372	ENST00000362031		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000609372	ENST00000355110		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000308824	ENST00000396526		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000308824	ENST00000396534		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000308824	ENST00000362031		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
5CDS-5UTR	ENST00000308824	ENST00000355110		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000266078	ENST00000396526		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000266078	ENST00000396534		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000266078	ENST00000362031		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
intron-5UTR	ENST00000266078	ENST00000355110		TCGA	RV	BRCA	TCGA-AO-A12D-01A	PCMTD2	chr20	62896782	+	SNX6	chr14	35078948	-
In-frame	ENST00000253925	ENST00000377809		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
In-frame	ENST00000253925	ENST00000402010		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
In-frame	ENST00000253925	ENST00000413835		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000377810		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000315032		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000508192		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000361128		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000350490		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000502399		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000509502		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000253925	ENST00000513765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000253925	ENST00000408948		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000253925	ENST00000425897		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
In-frame	ENST00000389547	ENST00000377809		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
In-frame	ENST00000389547	ENST00000402010		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
In-frame	ENST00000389547	ENST00000413835		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000377810		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000315032		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000508192		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000361128		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000350490		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000502399		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000509502		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000389547	ENST00000513765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000389547	ENST00000408948		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000389547	ENST00000425897		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-3CDS	ENST00000530548	ENST00000377809		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-3CDS	ENST00000530548	ENST00000402010		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-3CDS	ENST00000530548	ENST00000413835		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000377810		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000315032		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000508192		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000361128		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000350490		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000502399		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000509502		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530548	ENST00000513765		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-intron	ENST00000530548	ENST00000408948		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
intron-intron	ENST00000530548	ENST00000425897		TCGA	RV	BRCA	TCGA-A2-A1G4-01A	PPFIA1	chr11	70118542	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000356692	ENST00000318789		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000356692	ENST00000475937		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000356692	ENST00000493089		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000356692	ENST00000484350		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000356692	ENST00000318779		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000356692	ENST00000491238		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000356692	ENST00000498215		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000356692	ENST00000468577		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000356692	ENST00000472382		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-3CDS	ENST00000295862	ENST00000318789		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-3CDS	ENST00000295862	ENST00000475937		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-3CDS	ENST00000295862	ENST00000493089		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-3CDS	ENST00000295862	ENST00000484350		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-intron	ENST00000295862	ENST00000318779		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-intron	ENST00000295862	ENST00000491238		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-intron	ENST00000295862	ENST00000498215		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-intron	ENST00000295862	ENST00000468577		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5UTR-intron	ENST00000295862	ENST00000472382		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000394284	ENST00000318789		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000394284	ENST00000475937		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000394284	ENST00000493089		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000394284	ENST00000484350		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000394284	ENST00000318779		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000394284	ENST00000491238		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000394284	ENST00000498215		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000394284	ENST00000468577		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000394284	ENST00000472382		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000495566	ENST00000318789		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000495566	ENST00000475937		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000495566	ENST00000493089		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
Frame-shit	ENST00000495566	ENST00000484350		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000495566	ENST00000318779		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000495566	ENST00000491238		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000495566	ENST00000498215		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000495566	ENST00000468577		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
5CDS-intron	ENST00000495566	ENST00000472382		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	PPP4R2	chr3	73047309	+	FOXP1	chr3	71161788	-
In-frame	ENST00000408982	ENST00000376896		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000408982	ENST00000396204		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000262477	ENST00000376896		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000262477	ENST00000396204		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000537505	ENST00000376896		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000537505	ENST00000396204		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000546142	ENST00000376896		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000546142	ENST00000396204		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000341923	ENST00000376896		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
In-frame	ENST00000341923	ENST00000396204		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000570487	ENST00000376896		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000570487	ENST00000396204		TCGA	RV	BRCA	TCGA-A8-A07W-01A	RABEP1	chr17	5250220	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000399215	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399215	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399215	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399215	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399215	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399215	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399215	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-3CDS	ENST00000481477	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000481477	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000481477	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000481477	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000481477	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000481477	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000481477	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-3CDS	ENST00000399212	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000399212	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000399212	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000399212	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000399212	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000399212	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000399212	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-3CDS	ENST00000332131	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000332131	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000332131	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-5UTR	ENST00000332131	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000332131	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000332131	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
5UTR-intron	ENST00000332131	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-3CDS	ENST00000399205	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399205	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399205	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399205	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399205	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399205	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399205	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-3CDS	ENST00000399208	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399208	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399208	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399208	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399208	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399208	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399208	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-3CDS	ENST00000399201	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399201	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399201	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399201	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399201	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399201	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399201	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-3CDS	ENST00000399207	ENST00000291670		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399207	ENST00000498355		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399207	ENST00000397748		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-5UTR	ENST00000399207	ENST00000359679		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399207	ENST00000355384		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399207	ENST00000397743		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
intron-intron	ENST00000399207	ENST00000397746		TCGA	RV	BRCA	TCGA-C8-A275-01A	SETD4	chr21	37432645	-	FTCD	chr21	47558837	-
Frame-shit	ENST00000373491	ENST00000339468		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	TBC1D22B	chr6	37284982	+	YPEL1	chr22	22055507	-
5CDS-intron	ENST00000373491	ENST00000403503		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	TBC1D22B	chr6	37284982	+	YPEL1	chr22	22055507	-
In-frame	ENST00000377636	ENST00000406936		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
In-frame	ENST00000377636	ENST00000377615		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377636	ENST00000377619		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377636	ENST00000355801		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377636	ENST00000460675		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
In-frame	ENST00000431480	ENST00000406936		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
In-frame	ENST00000431480	ENST00000377615		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000431480	ENST00000377619		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000431480	ENST00000355801		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000431480	ENST00000460675		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5UTR-3CDS	ENST00000425511	ENST00000406936		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5UTR-3CDS	ENST00000425511	ENST00000377615		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5UTR-intron	ENST00000425511	ENST00000377619		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5UTR-intron	ENST00000425511	ENST00000355801		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5UTR-intron	ENST00000425511	ENST00000460675		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
In-frame	ENST00000377625	ENST00000406936		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
In-frame	ENST00000377625	ENST00000377615		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377625	ENST00000377619		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377625	ENST00000355801		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377625	ENST00000460675		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
intron-3CDS	ENST00000478591	ENST00000406936		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
intron-3CDS	ENST00000478591	ENST00000377615		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
intron-intron	ENST00000478591	ENST00000377619		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
intron-intron	ENST00000478591	ENST00000355801		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
intron-intron	ENST00000478591	ENST00000460675		TCGA	RV	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76111811	-
5UTR-3CDS	ENST00000521425	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-5UTR	ENST00000521425	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-5UTR	ENST00000521425	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-intron	ENST00000521425	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
Frame-shit	ENST00000262213	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5CDS-5UTR	ENST00000262213	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5CDS-5UTR	ENST00000262213	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5CDS-intron	ENST00000262213	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
In-frame	ENST00000536748	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5CDS-5UTR	ENST00000536748	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5CDS-5UTR	ENST00000536748	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5CDS-intron	ENST00000536748	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-3CDS	ENST00000521049	ENST00000519846		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-5UTR	ENST00000521049	ENST00000518592		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-5UTR	ENST00000521049	ENST00000325897		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
5UTR-intron	ENST00000521049	ENST00000518858		TCGA	RV	BRCA	TCGA-C8-A138-01A	TRAM1	chr8	71512254	-	CLVS1	chr8	62289164	+
Frame-shit	ENST00000334379	ENST00000304877		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000334379	ENST00000534000		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000334379	ENST00000368402		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000334379	ENST00000368388		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000334379	ENST00000527711		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000334379	ENST00000528193		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000334379	ENST00000532429		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000334379	ENST00000534199		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000334379	ENST00000392482		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000334379	ENST00000524679		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000334379	ENST00000530868		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000368332	ENST00000304877		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000368332	ENST00000534000		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000368332	ENST00000368402		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000368332	ENST00000368388		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000368332	ENST00000527711		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000368332	ENST00000528193		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000368332	ENST00000532429		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000368332	ENST00000534199		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000368332	ENST00000392482		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000368332	ENST00000524679		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000368332	ENST00000530868		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000450358	ENST00000304877		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000450358	ENST00000534000		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000450358	ENST00000368402		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000450358	ENST00000368388		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000450358	ENST00000527711		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000450358	ENST00000528193		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450358	ENST00000532429		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450358	ENST00000534199		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450358	ENST00000392482		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450358	ENST00000524679		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000450358	ENST00000530868		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000489934	ENST00000304877		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000489934	ENST00000534000		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000489934	ENST00000368402		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000489934	ENST00000368388		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000489934	ENST00000527711		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000489934	ENST00000528193		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000489934	ENST00000532429		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000489934	ENST00000534199		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000489934	ENST00000392482		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000489934	ENST00000524679		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
intron-intron	ENST00000489934	ENST00000530868		TCGA	RV	BRCA	TCGA-S3-AA15-01A	TRMT11	chr6	126307768	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000283033	ENST00000396516		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
Frame-shit	ENST00000283033	ENST00000355758		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
Frame-shit	ENST00000283033	ENST00000575984		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
5CDS-intron	ENST00000283033	ENST00000575170		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
Frame-shit	ENST00000356957	ENST00000396516		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
Frame-shit	ENST00000356957	ENST00000355758		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
Frame-shit	ENST00000356957	ENST00000575984		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
5CDS-intron	ENST00000356957	ENST00000575170		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
intron-3CDS	ENST00000570917	ENST00000396516		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
intron-3CDS	ENST00000570917	ENST00000355758		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
intron-3CDS	ENST00000570917	ENST00000575984		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
intron-intron	ENST00000570917	ENST00000575170		TCGA	RV	BRCA	TCGA-E2-A15A-06A	TXNDC11	chr16	11836333	-	ZC3H7A	chr16	11850226	-
5CDS-intron	ENST00000356136	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000356136	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5CDS-intron	ENST00000528420	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000533454	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000531818	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000532130	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000539288	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
3UTR-intron	ENST00000525872	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000541478		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000535715		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000422031		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000428192		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000538426		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000543004		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000536443		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
intron-intron	ENST00000538870	ENST00000543988		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	UVRAG	chr11	75623083	+	OTUB1	chr11	63764002	+
5UTR-5UTR	ENST00000360947	ENST00000449098		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000320084		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000336053		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000554969		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000556142		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000554455		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000430246		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000553753		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000555914		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000555309		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000556628		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000555883		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000556513		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000557201		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000553300		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000556897		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-5UTR	ENST00000360947	ENST00000420743		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000449098		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000320084		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000336053		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000554969		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000556142		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000554455		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000430246		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000553753		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000555914		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000555309		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000556628		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000555883		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000556513		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000557201		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000553300		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000556897		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000451119	ENST00000420743		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000449098		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000320084		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000336053		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000554969		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000556142		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000554455		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000430246		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000553753		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000555914		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000555309		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000556628		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000555883		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000556513		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000557201		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000553300		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000556897		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000421093	ENST00000420743		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000449098		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000320084		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000336053		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000554969		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000556142		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000554455		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000430246		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000553753		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000555914		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000555309		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000556628		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000555883		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000556513		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000557201		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000553300		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000556897		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
intron-5UTR	ENST00000556101	ENST00000420743		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ZNF219	chr14	21566471	-	HNRNPC	chr14	21702388	-
5UTR-3CDS	ENST00000541920	ENST00000262013		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5UTR-3CDS	ENST00000541920	ENST00000505279		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5UTR-3CDS	ENST00000541920	ENST00000357122		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5UTR-intron	ENST00000541920	ENST00000509724		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5UTR-intron	ENST00000541920	ENST00000510283		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000300441	ENST00000262013		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000300441	ENST00000505279		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000300441	ENST00000357122		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000300441	ENST00000509724		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000300441	ENST00000510283		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000504392	ENST00000262013		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000504392	ENST00000505279		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000504392	ENST00000357122		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000504392	ENST00000509724		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000504392	ENST00000510283		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000427954	ENST00000262013		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000427954	ENST00000505279		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000427954	ENST00000357122		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000427954	ENST00000509724		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000427954	ENST00000510283		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000502667	ENST00000262013		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000502667	ENST00000505279		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000502667	ENST00000357122		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000502667	ENST00000509724		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
5CDS-intron	ENST00000502667	ENST00000510283		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
intron-3CDS	ENST00000506085	ENST00000262013		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
intron-3CDS	ENST00000506085	ENST00000505279		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
intron-3CDS	ENST00000506085	ENST00000357122		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
intron-intron	ENST00000506085	ENST00000509724		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
intron-intron	ENST00000506085	ENST00000510283		TCGA	RV	BRCA	TCGA-A8-A07I-01A	ACSF2	chr17	48503750	+	SPAG9	chr17	49091714	-
In-frame	ENST00000280772	ENST00000539406		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000280772	ENST00000222792		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000280772	ENST00000435288		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000280772	ENST00000495789		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000539389		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000546235		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000409041		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000424025		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000439711		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000421775		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000280772	ENST00000410098		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000373827	ENST00000539406		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000373827	ENST00000222792		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000373827	ENST00000435288		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000373827	ENST00000495789		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000539389		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000546235		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000409041		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000424025		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000439711		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000421775		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000373827	ENST00000410098		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000355288	ENST00000539406		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000355288	ENST00000222792		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000355288	ENST00000435288		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000355288	ENST00000495789		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000539389		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000546235		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000409041		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000424025		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000439711		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000421775		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000355288	ENST00000410098		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000503366	ENST00000539406		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000503366	ENST00000222792		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000503366	ENST00000435288		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000503366	ENST00000495789		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000539389		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000546235		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000409041		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000424025		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000439711		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000421775		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
5CDS-intron	ENST00000503366	ENST00000410098		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000510382	ENST00000539406		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000510382	ENST00000222792		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000510382	ENST00000435288		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000510382	ENST00000495789		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000539389		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000546235		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000409041		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000424025		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000439711		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000421775		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000510382	ENST00000410098		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000460468	ENST00000539406		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000460468	ENST00000222792		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000460468	ENST00000435288		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-3CDS	ENST00000460468	ENST00000495789		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000539389		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000546235		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000409041		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000424025		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000439711		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000421775		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
intron-intron	ENST00000460468	ENST00000410098		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	ANK3	chr10	62021617	-	CHN2	chr7	29433295	+
In-frame	ENST00000352480	ENST00000372398		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
5CDS-3UTR	ENST00000352480	ENST00000493042		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
5CDS-3UTR	ENST00000352480	ENST00000458469		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
In-frame	ENST00000372394	ENST00000372398		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
5CDS-3UTR	ENST00000372394	ENST00000493042		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
5CDS-3UTR	ENST00000372394	ENST00000458469		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
In-frame	ENST00000372393	ENST00000372398		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
5CDS-3UTR	ENST00000372393	ENST00000493042		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
5CDS-3UTR	ENST00000372393	ENST00000458469		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
3UTR-3CDS	ENST00000493984	ENST00000372398		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
3UTR-3UTR	ENST00000493984	ENST00000493042		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
3UTR-3UTR	ENST00000493984	ENST00000458469		TCGA	RV	BRCA	TCGA-A8-A0A4-01A	ASS1	chr9	133355836	+	NCS1	chr9	132963237	+
In-frame	ENST00000287394	ENST00000541194		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
In-frame	ENST00000287394	ENST00000537928		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
In-frame	ENST00000287394	ENST00000378555		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
In-frame	ENST00000287394	ENST00000322985		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
5CDS-5UTR	ENST00000287394	ENST00000465001		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000521903	ENST00000541194		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000521903	ENST00000537928		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000521903	ENST00000378555		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000521903	ENST00000322985		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
5CDS-5UTR	ENST00000521903	ENST00000465001		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
intron-3CDS	ENST00000534257	ENST00000541194		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
intron-3CDS	ENST00000534257	ENST00000537928		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
intron-3CDS	ENST00000534257	ENST00000378555		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
intron-3CDS	ENST00000534257	ENST00000322985		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
intron-5UTR	ENST00000534257	ENST00000465001		TCGA	RV	BRCA	TCGA-E9-A243-01A	ATAD2	chr8	124351551	-	PODXL	chr7	131196192	-
5UTR-3CDS	ENST00000273398	ENST00000361828		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000273398	ENST00000361510		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000273398	ENST00000361150		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000273398	ENST00000361715		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000273398	ENST00000361908		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000273398	ENST00000392438		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-intron	ENST00000273398	ENST00000487986		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000538620	ENST00000361828		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000538620	ENST00000361510		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000538620	ENST00000361150		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000538620	ENST00000361715		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000538620	ENST00000361908		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-3CDS	ENST00000538620	ENST00000392438		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
5UTR-intron	ENST00000538620	ENST00000487986		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-3CDS	ENST00000461496	ENST00000361828		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-3CDS	ENST00000461496	ENST00000361510		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-3CDS	ENST00000461496	ENST00000361150		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-3CDS	ENST00000461496	ENST00000361715		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-3CDS	ENST00000461496	ENST00000361908		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-3CDS	ENST00000461496	ENST00000392438		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-intron	ENST00000461496	ENST00000487986		TCGA	RV	BRCA	TCGA-A8-A06U-01A	ATP6V1A	chr3	113465960	+	OPA1	chr3	193349401	+
intron-5UTR	ENST00000374706	ENST00000473039		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
intron-5UTR	ENST00000374706	ENST00000373624		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
intron-intron	ENST00000374706	ENST00000542603		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
intron-intron	ENST00000374706	ENST00000394219		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
intron-intron	ENST00000374706	ENST00000373620		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
intron-intron	ENST00000374706	ENST00000394215		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
intron-intron	ENST00000374706	ENST00000373618		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-5UTR	ENST00000265375	ENST00000473039		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-5UTR	ENST00000265375	ENST00000373624		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-intron	ENST00000265375	ENST00000542603		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-intron	ENST00000265375	ENST00000394219		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-intron	ENST00000265375	ENST00000373620		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-intron	ENST00000265375	ENST00000394215		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-intron	ENST00000265375	ENST00000373618		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-5UTR	ENST00000339497	ENST00000473039		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-5UTR	ENST00000339497	ENST00000373624		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000339497	ENST00000542603		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000339497	ENST00000394219		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000339497	ENST00000373620		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000339497	ENST00000394215		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000339497	ENST00000373618		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-5UTR	ENST00000374704	ENST00000473039		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-5UTR	ENST00000374704	ENST00000373624		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000374704	ENST00000542603		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000374704	ENST00000394219		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000374704	ENST00000373620		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000374704	ENST00000394215		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5CDS-intron	ENST00000374704	ENST00000373618		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-5UTR	ENST00000492478	ENST00000473039		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-5UTR	ENST00000492478	ENST00000373624		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-intron	ENST00000492478	ENST00000542603		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-intron	ENST00000492478	ENST00000394219		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-intron	ENST00000492478	ENST00000373620		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-intron	ENST00000492478	ENST00000394215		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
3UTR-intron	ENST00000492478	ENST00000373618		TCGA	RV	BRCA	TCGA-AR-A256-01A	CCNY	chr10	35626135	+	DENND1A	chr9	126520101	-
5UTR-3CDS	ENST00000470450	ENST00000263726		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30432862	-	LHX4	chr1	180217420	+
Frame-shit	ENST00000286788	ENST00000263726		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30432862	-	LHX4	chr1	180217420	+
In-frame	ENST00000542732	ENST00000263726		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30432862	-	LHX4	chr1	180217420	+
Frame-shit	ENST00000540844	ENST00000263726		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30432862	-	LHX4	chr1	180217420	+
5UTR-3CDS	ENST00000346693	ENST00000370540		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CD99L2	chrX	150066995	-	CXorf66	chrX	139040376	-
Frame-shit	ENST00000370377	ENST00000370540		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CD99L2	chrX	150066995	-	CXorf66	chrX	139040376	-
Frame-shit	ENST00000355149	ENST00000370540		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CD99L2	chrX	150066995	-	CXorf66	chrX	139040376	-
Frame-shit	ENST00000437787	ENST00000370540		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CD99L2	chrX	150066995	-	CXorf66	chrX	139040376	-
Frame-shit	ENST00000466436	ENST00000370540		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CD99L2	chrX	150066995	-	CXorf66	chrX	139040376	-
Frame-shit	ENST00000320893	ENST00000370540		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	CD99L2	chrX	150066995	-	CXorf66	chrX	139040376	-
In-frame	ENST00000373325	ENST00000372622		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	DHX35	chr20	37612419	+	DNTTIP1	chr20	44439524	+
In-frame	ENST00000252011	ENST00000372622		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	DHX35	chr20	37612419	+	DNTTIP1	chr20	44439524	+
In-frame	ENST00000373323	ENST00000372622		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	DHX35	chr20	37612419	+	DNTTIP1	chr20	44439524	+
In-frame	ENST00000340473	ENST00000540320		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
In-frame	ENST00000340473	ENST00000400445		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
In-frame	ENST00000340473	ENST00000310336		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
In-frame	ENST00000340473	ENST00000379939		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
5CDS-intron	ENST00000340473	ENST00000537702		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
5CDS-intron	ENST00000340473	ENST00000379922		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
5CDS-intron	ENST00000340473	ENST00000461581		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-3CDS	ENST00000494087	ENST00000540320		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-3CDS	ENST00000494087	ENST00000400445		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-3CDS	ENST00000494087	ENST00000310336		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-3CDS	ENST00000494087	ENST00000379939		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-intron	ENST00000494087	ENST00000537702		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-intron	ENST00000494087	ENST00000379922		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
3UTR-intron	ENST00000494087	ENST00000461581		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	GTF2F2	chr13	45781640	+	NBEA	chr13	35923245	+
Frame-shit	ENST00000358691	ENST00000588240		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
5CDS-5UTR	ENST00000358691	ENST00000592237		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
5CDS-5UTR	ENST00000358691	ENST00000311979		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
Frame-shit	ENST00000580168	ENST00000588240		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
5CDS-5UTR	ENST00000580168	ENST00000592237		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
5CDS-5UTR	ENST00000580168	ENST00000311979		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
intron-3CDS	ENST00000580662	ENST00000588240		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
intron-5UTR	ENST00000580662	ENST00000592237		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
intron-5UTR	ENST00000580662	ENST00000311979		TCGA	RV	BRCA	TCGA-3C-AALI-01A	HELZ	chr17	65124767	-	TAF15	chr17	34144720	+
In-frame	ENST00000392332	ENST00000466387		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000392332	ENST00000496558		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000392332	ENST00000361291		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000392332	ENST00000402739		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000392332	ENST00000540488		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000392332	ENST00000541047		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000392332	ENST00000343114		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000392332	ENST00000496251		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000392332	ENST00000409266		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000466387		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000496558		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000361291		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000402739		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000540488		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000541047		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000359678	ENST00000343114		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000359678	ENST00000496251		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000359678	ENST00000409266		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000466387		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000496558		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000361291		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000402739		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000540488		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000541047		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000410045	ENST00000343114		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000410045	ENST00000496251		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000410045	ENST00000409266		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000466387		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000496558		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000361291		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000402739		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000540488		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000541047		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000486981	ENST00000343114		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000486981	ENST00000496251		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000486981	ENST00000409266		TCGA	RV	BRCA	TCGA-A8-A09M-01A	HIBCH	chr2	191175480	-	CTNNA2	chr2	80620336	+
5CDS-3UTR	ENST00000263370	ENST00000602240		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-3UTR	ENST00000263370	ENST00000204005		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000545697		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000308370		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000396819		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-intron	ENST00000263370	ENST00000243562		TCGA	RV	BRCA	TCGA-BH-A18V-06A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000325327	ENST00000382159		TCGA	RV	BRCA	TCGA-A8-A08R-01A	LMNB2	chr19	2444402	-	GNG7	chr19	2555186	-
5CDS-5UTR	ENST00000582871	ENST00000382159		TCGA	RV	BRCA	TCGA-A8-A08R-01A	LMNB2	chr19	2444402	-	GNG7	chr19	2555186	-
intron-5UTR	ENST00000475819	ENST00000382159		TCGA	RV	BRCA	TCGA-A8-A08R-01A	LMNB2	chr19	2444402	-	GNG7	chr19	2555186	-
5CDS-5UTR	ENST00000377809	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000377809	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000377809	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000402010	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000402010	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000402010	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000413835	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000413835	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000413835	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000377810	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000377810	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000377810	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000315032	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000315032	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000315032	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000508192	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000508192	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000508192	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000361128	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000361128	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000361128	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000350490	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000350490	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000350490	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000502399	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000502399	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000502399	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000509502	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000509502	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000509502	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000513765	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000513765	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000513765	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000408948	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000408948	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000408948	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000425897	ENST00000064778		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000425897	ENST00000450446		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000425897	ENST00000356467		TCGA	RV	BRCA	TCGA-A7-A4SB-01A	MARK2	chr11	63607032	+	FAM168A	chr11	73179537	-
In-frame	ENST00000302503	ENST00000263773		TCGA	RV	BRCA	TCGA-A2-A25D-01A	MTCH2	chr11	47660251	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000302503	ENST00000534003		TCGA	RV	BRCA	TCGA-A2-A25D-01A	MTCH2	chr11	47660251	-	FNBP4	chr11	47741638	-
5UTR-3CDS	ENST00000542981	ENST00000263773		TCGA	RV	BRCA	TCGA-A2-A25D-01A	MTCH2	chr11	47660251	-	FNBP4	chr11	47741638	-
5UTR-intron	ENST00000542981	ENST00000534003		TCGA	RV	BRCA	TCGA-A2-A25D-01A	MTCH2	chr11	47660251	-	FNBP4	chr11	47741638	-
intron-3CDS	ENST00000534074	ENST00000263773		TCGA	RV	BRCA	TCGA-A2-A25D-01A	MTCH2	chr11	47660251	-	FNBP4	chr11	47741638	-
intron-intron	ENST00000534074	ENST00000534003		TCGA	RV	BRCA	TCGA-A2-A25D-01A	MTCH2	chr11	47660251	-	FNBP4	chr11	47741638	-
5CDS-intron	ENST00000396398	ENST00000328823		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-intron	ENST00000396398	ENST00000461730		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-3UTR	ENST00000396398	ENST00000543212		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-intron	ENST00000403363	ENST00000328823		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-intron	ENST00000403363	ENST00000461730		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-3UTR	ENST00000403363	ENST00000543212		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-intron	ENST00000402937	ENST00000328823		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-intron	ENST00000402937	ENST00000461730		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
5CDS-3UTR	ENST00000402937	ENST00000543212		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	NAGA	chr22	42458831	-	WBP2NL	chr22	42426724	+
In-frame	ENST00000573500	ENST00000258947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000573500	ENST00000509507		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000573500	ENST00000448105		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000573500	ENST00000416445		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000573500	ENST00000508679		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
5CDS-intron	ENST00000573500	ENST00000510997		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000576221	ENST00000258947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000576221	ENST00000509507		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000576221	ENST00000448105		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000576221	ENST00000416445		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000576221	ENST00000508679		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-intron	ENST00000576221	ENST00000510997		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000268896	ENST00000258947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000268896	ENST00000509507		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000268896	ENST00000448105		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000268896	ENST00000416445		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000268896	ENST00000508679		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
5CDS-intron	ENST00000268896	ENST00000510997		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000576183	ENST00000258947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000576183	ENST00000509507		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000576183	ENST00000448105		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000576183	ENST00000416445		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000576183	ENST00000508679		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
5CDS-intron	ENST00000576183	ENST00000510997		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000325214	ENST00000258947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000325214	ENST00000509507		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000325214	ENST00000448105		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000325214	ENST00000416445		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-3CDS	ENST00000325214	ENST00000508679		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
intron-intron	ENST00000325214	ENST00000510997		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PCTP	chr17	53828605	+	CALCOCO2	chr17	46937676	+
In-frame	ENST00000308249	ENST00000321765		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	PPM1E	chr17	57043254	+	SPAG5	chr17	26913200	-
Frame-shit	ENST00000295797	ENST00000436636		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000538048		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000369326		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000341852		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000284483		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000470834		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000460047		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000475336		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000488470		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
Frame-shit	ENST00000295797	ENST00000357327		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
5CDS-intron	ENST00000295797	ENST00000464785		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
5CDS-intron	ENST00000295797	ENST00000465393		TCGA	RV	BRCA	TCGA-D8-A27N-01A	PRKCI	chr3	169953139	+	TNIK	chr3	170912424	-
In-frame	ENST00000372648	ENST00000393533		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000372648	ENST00000372814		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000372648	ENST00000351030		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000372648	ENST00000604420		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000535026		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000448249		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000393527		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000434106		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000546203		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000372791		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000372807		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000372648	ENST00000444119		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3CDS	ENST00000539497	ENST00000393533		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3CDS	ENST00000539497	ENST00000372814		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3CDS	ENST00000539497	ENST00000351030		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3CDS	ENST00000539497	ENST00000604420		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000535026		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000448249		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000393527		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000434106		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000546203		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000372791		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000372807		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5UTR-3UTR	ENST00000539497	ENST00000444119		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3CDS	ENST00000466056	ENST00000393533		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3CDS	ENST00000466056	ENST00000372814		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3CDS	ENST00000466056	ENST00000351030		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3CDS	ENST00000466056	ENST00000604420		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000535026		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000448249		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000393527		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000434106		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000546203		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000372791		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000372807		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
3UTR-3UTR	ENST00000466056	ENST00000444119		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000223865	ENST00000393533		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000223865	ENST00000372814		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000223865	ENST00000351030		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000223865	ENST00000604420		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000535026		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000448249		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000393527		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000434106		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000546203		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000372791		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000372807		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
5CDS-3UTR	ENST00000223865	ENST00000444119		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	TBC1D13	chr9	131559493	+	ODF2	chr9	131245095	+
In-frame	ENST00000539652	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000539652	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000539652	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000556010	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000556010	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000556010	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000358230	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000358230	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000358230	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
intron-3CDS	ENST00000544599	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
intron-3CDS	ENST00000544599	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
intron-intron	ENST00000544599	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000286424	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000286424	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000286424	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000398033	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000398033	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000398033	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000542724	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
In-frame	ENST00000542724	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000542724	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5UTR-3CDS	ENST00000535812	ENST00000361937		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5UTR-3CDS	ENST00000535812	ENST00000401393		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5UTR-intron	ENST00000535812	ENST00000561244		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	TMBIM4	chr12	66563635	-	INO80	chr15	41297885	-
5CDS-5UTR	ENST00000560371	ENST00000356711		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000560371	ENST00000251041		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000560371	ENST00000357550		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000560371	ENST00000457511		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000560371	ENST00000467639		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000347662	ENST00000356711		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000347662	ENST00000251041		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000347662	ENST00000357550		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000347662	ENST00000457511		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000347662	ENST00000467639		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000392745	ENST00000356711		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000392745	ENST00000251041		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000392745	ENST00000357550		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000392745	ENST00000457511		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000392745	ENST00000467639		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
intron-5UTR	ENST00000539721	ENST00000356711		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
intron-5UTR	ENST00000539721	ENST00000251041		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
intron-5UTR	ENST00000539721	ENST00000357550		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
intron-intron	ENST00000539721	ENST00000457511		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
intron-intron	ENST00000539721	ENST00000467639		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000351691	ENST00000356711		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000351691	ENST00000251041		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-5UTR	ENST00000351691	ENST00000357550		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000351691	ENST00000457511		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
5CDS-intron	ENST00000351691	ENST00000467639		TCGA	RV	BRCA	TCGA-B6-A400-01A	TRAF3	chr14	103352606	+	MYO16	chr13	109318234	+
In-frame	ENST00000360943	ENST00000312513		TCGA	RV	BRCA	TCGA-3C-AALI-01A	UBE2Z	chr17	46990383	+	MRPL45	chr17	36462500	+
3UTR-3CDS	ENST00000395996	ENST00000530927		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
3UTR-3CDS	ENST00000395996	ENST00000380815		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
3UTR-intron	ENST00000395996	ENST00000467288		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
Frame-shit	ENST00000358544	ENST00000530927		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
Frame-shit	ENST00000358544	ENST00000380815		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000358544	ENST00000467288		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
Frame-shit	ENST00000357162	ENST00000530927		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
Frame-shit	ENST00000357162	ENST00000380815		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000357162	ENST00000467288		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000355155	ENST00000530927		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000355155	ENST00000380815		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-intron	ENST00000355155	ENST00000467288		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000441350	ENST00000530927		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000441350	ENST00000380815		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-intron	ENST00000441350	ENST00000467288		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000521932	ENST00000530927		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000521932	ENST00000380815		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
intron-intron	ENST00000521932	ENST00000467288		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	VPS13B	chr8	100844880	+	GMDS	chr6	1742820	-
Frame-shit	ENST00000375664	ENST00000403766		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000375664	ENST00000376440		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
5CDS-3UTR	ENST00000375664	ENST00000460562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000375646	ENST00000403766		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000375646	ENST00000376440		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
5CDS-3UTR	ENST00000375646	ENST00000460562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000347934	ENST00000403766		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000347934	ENST00000376440		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
5CDS-3UTR	ENST00000347934	ENST00000460562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000354911	ENST00000403766		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000354911	ENST00000376440		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
5CDS-3UTR	ENST00000354911	ENST00000460562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000428935	ENST00000403766		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
Frame-shit	ENST00000428935	ENST00000376440		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
5CDS-3UTR	ENST00000428935	ENST00000460562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
intron-3CDS	ENST00000532233	ENST00000403766		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
intron-3CDS	ENST00000532233	ENST00000376440		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
intron-3UTR	ENST00000532233	ENST00000460562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	WAC	chr10	28872434	+	UBAC2	chr13	99966351	+
In-frame	ENST00000608083	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
In-frame	ENST00000377855	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
Frame-shit	ENST00000545482	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
In-frame	ENST00000361521	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
In-frame	ENST00000377842	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
In-frame	ENST00000377845	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
intron-3CDS	ENST00000541130	ENST00000374479		TCGA	RV	BRCA	TCGA-D8-A1XZ-01A	ACOT7	chr1	6341162	-	FUCA1	chr1	24181050	-
intron-intron	ENST00000360162	ENST00000369683		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
intron-intron	ENST00000360162	ENST00000369680		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
intron-intron	ENST00000360162	ENST00000502935		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
intron-intron	ENST00000360162	ENST00000322238		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
intron-intron	ENST00000360162	ENST00000430337		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000356080	ENST00000369683		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000356080	ENST00000369680		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000356080	ENST00000502935		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000356080	ENST00000322238		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000356080	ENST00000430337		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000277900	ENST00000369683		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000277900	ENST00000369680		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000277900	ENST00000502935		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000277900	ENST00000322238		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-intron	ENST00000277900	ENST00000430337		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
3UTR-intron	ENST00000497125	ENST00000369683		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
3UTR-intron	ENST00000497125	ENST00000369680		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
3UTR-intron	ENST00000497125	ENST00000502935		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
3UTR-intron	ENST00000497125	ENST00000322238		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
3UTR-intron	ENST00000497125	ENST00000430337		TCGA	RV	BRCA	TCGA-BH-A1EY-01A	ADD3	chr10	111768057	+	XPNPEP1	chr10	111652833	-
5UTR-5UTR	ENST00000396029	ENST00000466152		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
5UTR-5UTR	ENST00000396029	ENST00000371588		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
5UTR-5UTR	ENST00000396029	ENST00000371582		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
5UTR-5UTR	ENST00000396029	ENST00000371583		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000396032	ENST00000466152		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000396032	ENST00000371588		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000396032	ENST00000371582		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000396032	ENST00000371583		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000371602	ENST00000466152		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000371602	ENST00000371588		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000371602	ENST00000371582		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000371602	ENST00000371583		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000349014	ENST00000466152		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000349014	ENST00000371588		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000349014	ENST00000371582		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
intron-5UTR	ENST00000349014	ENST00000371583		TCGA	RV	BRCA	TCGA-A2-A25B-01A	ADNP	chr20	49545188	-	DPM1	chr20	49562460	-
In-frame	ENST00000394196	ENST00000450735		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000394196	ENST00000304231		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000394196	ENST00000399166		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000394196	ENST00000426485		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
5CDS-intron	ENST00000394196	ENST00000500334		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000557381	ENST00000450735		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000557381	ENST00000304231		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000557381	ENST00000399166		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
In-frame	ENST00000557381	ENST00000426485		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
5CDS-intron	ENST00000557381	ENST00000500334		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000420239	ENST00000450735		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000420239	ENST00000304231		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000420239	ENST00000399166		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000420239	ENST00000426485		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-intron	ENST00000420239	ENST00000500334		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000536619	ENST00000450735		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000536619	ENST00000304231		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000536619	ENST00000399166		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000536619	ENST00000426485		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-intron	ENST00000536619	ENST00000500334		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000554122	ENST00000450735		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000554122	ENST00000304231		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000554122	ENST00000399166		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-3CDS	ENST00000554122	ENST00000426485		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
intron-intron	ENST00000554122	ENST00000500334		TCGA	RV	BRCA	TCGA-A8-A06U-01A	CHD2	chr15	93496803	+	HOMER2	chr15	83533011	-
Frame-shit	ENST00000439649	ENST00000399322		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000439649	ENST00000258767		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000439649	ENST00000403951		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000439649	ENST00000402815		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000439649	ENST00000407950		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000439649	ENST00000444700		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000439649	ENST00000406247		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
5CDS-5UTR	ENST00000439649	ENST00000403963		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000399322		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000258767		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000403951		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000402815		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000407950		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000444700		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000369236	ENST00000406247		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
5CDS-5UTR	ENST00000369236	ENST00000403963		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000399322		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000258767		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000403951		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000402815		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000407950		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000444700		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
Frame-shit	ENST00000355422	ENST00000406247		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
5CDS-5UTR	ENST00000355422	ENST00000403963		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000399322		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000258767		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000403951		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000402815		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000407950		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000444700		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000544592	ENST00000406247		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-5UTR	ENST00000544592	ENST00000403963		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000399322		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000258767		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000403951		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000402815		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000407950		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000444700		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-3CDS	ENST00000490345	ENST00000406247		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
intron-5UTR	ENST00000490345	ENST00000403963		TCGA	RV	BRCA	TCGA-AQ-A04L-01B	GFRA1	chr10	118029015	-	DGKB	chr7	14733819	-
5CDS-intron	ENST00000393432	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000393432	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000393432	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-5UTR	ENST00000393432	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000442819	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000442819	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000442819	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-5UTR	ENST00000442819	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000356731	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000356731	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000356731	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-5UTR	ENST00000356731	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-intron	ENST00000329433	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-intron	ENST00000329433	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-intron	ENST00000329433	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-5UTR	ENST00000329433	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000510411	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000510411	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000510411	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-5UTR	ENST00000510411	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000511300	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000511300	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-intron	ENST00000511300	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
5CDS-5UTR	ENST00000511300	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-intron	ENST00000524180	ENST00000522208		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-intron	ENST00000524180	ENST00000521389		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-intron	ENST00000524180	ENST00000261947		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
intron-5UTR	ENST00000524180	ENST00000520564		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	HNRNPH1	chr5	179042547	-	RNF130	chr5	179382669	-
In-frame	ENST00000307602	ENST00000520810		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
In-frame	ENST00000307602	ENST00000416505		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
In-frame	ENST00000307602	ENST00000519735		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
In-frame	ENST00000307602	ENST00000520835		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000307602	ENST00000379708		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000307602	ENST00000518983		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000307602	ENST00000522147		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000307602	ENST00000522785		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000524839	ENST00000520810		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000524839	ENST00000416505		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000524839	ENST00000519735		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000524839	ENST00000520835		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000524839	ENST00000379708		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000524839	ENST00000518983		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000524839	ENST00000522147		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000524839	ENST00000522785		TCGA	RV	BRCA	TCGA-A2-A0D1-01A	HOOK3	chr8	42798588	+	IKBKB	chr8	42162705	+
In-frame	ENST00000344756	ENST00000404039		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000344756	ENST00000406326		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000344756	ENST00000377770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000344756	ENST00000332007		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
5CDS-3UTR	ENST00000344756	ENST00000496611		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
5CDS-3UTR	ENST00000344756	ENST00000427557		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000340368	ENST00000404039		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000340368	ENST00000406326		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000340368	ENST00000377770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
In-frame	ENST00000340368	ENST00000332007		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
5CDS-3UTR	ENST00000340368	ENST00000496611		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
5CDS-3UTR	ENST00000340368	ENST00000427557		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
3UTR-3CDS	ENST00000342407	ENST00000404039		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
3UTR-3CDS	ENST00000342407	ENST00000406326		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
3UTR-3CDS	ENST00000342407	ENST00000377770		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
3UTR-3CDS	ENST00000342407	ENST00000332007		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
3UTR-3UTR	ENST00000342407	ENST00000496611		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
3UTR-3UTR	ENST00000342407	ENST00000427557		TCGA	RV	BRCA	TCGA-A2-A04U-01A	INSIG1	chr7	155094556	+	DPP6	chr7	154263927	+
Frame-shit	ENST00000325324	ENST00000274456		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000325324	ENST00000513374		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000325324	ENST00000504771		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000325324	ENST00000503646		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000325324	ENST00000504642		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000325324	ENST00000415806		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000409296	ENST00000274456		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000409296	ENST00000513374		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000409296	ENST00000504771		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000409296	ENST00000503646		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000409296	ENST00000504642		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000409296	ENST00000415806		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000409534	ENST00000274456		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000409534	ENST00000513374		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000409534	ENST00000504771		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000409534	ENST00000503646		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000409534	ENST00000504642		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3UTR	ENST00000409534	ENST00000415806		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000512177	ENST00000274456		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000512177	ENST00000513374		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000512177	ENST00000504771		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000512177	ENST00000503646		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000512177	ENST00000504642		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
intron-3UTR	ENST00000512177	ENST00000415806		TCGA	RV	BRCA	TCGA-A8-A08L-01A	IPO11	chr5	61770291	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000505658	ENST00000346872		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000394189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000439167		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000535189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000377944		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000377945		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000377952		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000377958		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000346243		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000350532		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000351680		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000467757		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000439016		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000505658	ENST00000583368		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000393227	ENST00000346872		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000394189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000439167		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000535189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000377944		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000377945		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000377952		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000377958		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000346243		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000350532		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000351680		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000467757		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000439016		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000393227	ENST00000583368		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000311571	ENST00000346872		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000394189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000439167		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000535189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000377944		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000377945		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000377952		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000377958		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000346243		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000350532		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000351680		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000467757		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000439016		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000311571	ENST00000583368		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000240304	ENST00000346872		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000394189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000439167		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000535189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000377944		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000377945		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000377952		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000377958		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000346243		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000350532		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000351680		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000467757		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000439016		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000240304	ENST00000583368		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-3CDS	ENST00000544170	ENST00000346872		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000394189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000439167		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000535189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000377944		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000377945		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000377952		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000377958		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000346243		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000350532		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000351680		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000467757		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000439016		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000544170	ENST00000583368		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000503798	ENST00000346872		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000394189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000439167		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000535189		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000377944		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000377945		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000377952		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000377958		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000346243		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000350532		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000351680		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000467757		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000439016		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000503798	ENST00000583368		TCGA	RV	BRCA	TCGA-E2-A1LB-01A	LUC7L3	chr17	48797192	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000309993	ENST00000264977		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000309993	ENST00000490467		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000309993	ENST00000334546		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000309993	ENST00000492624		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000309993	ENST00000469270		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000434835	ENST00000264977		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000434835	ENST00000490467		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000434835	ENST00000334546		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000434835	ENST00000492624		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000434835	ENST00000469270		TCGA	RV	BRCA	TCGA-A8-A08P-01A	MSL2	chr3	135913814	-	PPP2R3A	chr3	135863885	+
In-frame	ENST00000255087	ENST00000253925		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
In-frame	ENST00000255087	ENST00000389547		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
5CDS-intron	ENST00000255087	ENST00000530548		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
5UTR-3CDS	ENST00000540869	ENST00000253925		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
5UTR-3CDS	ENST00000540869	ENST00000389547		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
5UTR-intron	ENST00000540869	ENST00000530548		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
intron-3CDS	ENST00000443940	ENST00000253925		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
intron-3CDS	ENST00000443940	ENST00000389547		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
intron-intron	ENST00000443940	ENST00000530548		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
intron-3CDS	ENST00000544963	ENST00000253925		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
intron-3CDS	ENST00000544963	ENST00000389547		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
intron-intron	ENST00000544963	ENST00000530548		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	MTL5	chr11	68506168	-	PPFIA1	chr11	70208201	+
Frame-shit	ENST00000606098	ENST00000409911		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000606098	ENST00000409884		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
In-frame	ENST00000606098	ENST00000409093		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000606098	ENST00000409088		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000606098	ENST00000409282		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000606098	ENST00000491242		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000285083	ENST00000409911		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000285083	ENST00000409884		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
In-frame	ENST00000285083	ENST00000409093		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000285083	ENST00000409088		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000285083	ENST00000409282		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000285083	ENST00000491242		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000605932	ENST00000409911		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000605932	ENST00000409884		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
In-frame	ENST00000605932	ENST00000409093		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000605932	ENST00000409088		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000605932	ENST00000409282		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000605932	ENST00000491242		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000435829	ENST00000409911		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000435829	ENST00000409884		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
In-frame	ENST00000435829	ENST00000409093		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000435829	ENST00000409088		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000435829	ENST00000409282		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000435829	ENST00000491242		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000544043	ENST00000409911		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
Frame-shit	ENST00000544043	ENST00000409884		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
In-frame	ENST00000544043	ENST00000409093		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000544043	ENST00000409088		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000544043	ENST00000409282		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-intron	ENST00000544043	ENST00000491242		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
intron-3CDS	ENST00000607329	ENST00000409911		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
intron-3CDS	ENST00000607329	ENST00000409884		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
intron-3CDS	ENST00000607329	ENST00000409093		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
intron-intron	ENST00000607329	ENST00000409088		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
intron-intron	ENST00000607329	ENST00000409282		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
intron-intron	ENST00000607329	ENST00000491242		TCGA	RV	BRCA	TCGA-AR-A0TZ-01A	OXNAD1	chr3	16327955	+	LRRTM4	chr2	76976042	-
5CDS-5UTR	ENST00000253925	ENST00000543831		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000253925	ENST00000369416		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000253925	ENST00000471656		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000389547	ENST00000543831		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000389547	ENST00000369416		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000389547	ENST00000471656		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
intron-5UTR	ENST00000530548	ENST00000543831		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
intron-5UTR	ENST00000530548	ENST00000369416		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
intron-3UTR	ENST00000530548	ENST00000471656		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	PPFIA1	chr11	70194526	+	HSD3B2	chr1	119957954	+
5UTR-5UTR	ENST00000254066	ENST00000264657		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
5UTR-intron	ENST00000254066	ENST00000585517		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
5UTR-intron	ENST00000254066	ENST00000389272		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
5UTR-intron	ENST00000254066	ENST00000588969		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
5UTR-intron	ENST00000254066	ENST00000404395		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
5UTR-intron	ENST00000254066	ENST00000590776		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-5UTR	ENST00000394089	ENST00000264657		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394089	ENST00000585517		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394089	ENST00000389272		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394089	ENST00000588969		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394089	ENST00000404395		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394089	ENST00000590776		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-5UTR	ENST00000425707	ENST00000264657		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000425707	ENST00000585517		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000425707	ENST00000389272		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000425707	ENST00000588969		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000425707	ENST00000404395		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000425707	ENST00000590776		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-5UTR	ENST00000394086	ENST00000264657		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394086	ENST00000585517		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394086	ENST00000389272		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394086	ENST00000588969		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394086	ENST00000404395		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394086	ENST00000590776		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-5UTR	ENST00000394081	ENST00000264657		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394081	ENST00000585517		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394081	ENST00000389272		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394081	ENST00000588969		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394081	ENST00000404395		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000394081	ENST00000590776		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-5UTR	ENST00000420042	ENST00000264657		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000420042	ENST00000585517		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000420042	ENST00000389272		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000420042	ENST00000588969		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000420042	ENST00000404395		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
intron-intron	ENST00000420042	ENST00000590776		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500557	-
In-frame	ENST00000256257	ENST00000357731		TCGA	RV	BRCA	TCGA-BH-A204-01A	RNF122	chr8	33424217	-	NEGR1	chr1	71873253	-
Frame-shit	ENST00000256257	ENST00000306821		TCGA	RV	BRCA	TCGA-BH-A204-01A	RNF122	chr8	33424217	-	NEGR1	chr1	71873253	-
In-frame	ENST00000256257	ENST00000434200		TCGA	RV	BRCA	TCGA-BH-A204-01A	RNF122	chr8	33424217	-	NEGR1	chr1	71873253	-
5CDS-intron	ENST00000256257	ENST00000467479		TCGA	RV	BRCA	TCGA-BH-A204-01A	RNF122	chr8	33424217	-	NEGR1	chr1	71873253	-
In-frame	ENST00000413379	ENST00000354590		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000413379	ENST00000594051		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000413379	ENST00000600990		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
5UTR-3CDS	ENST00000540850	ENST00000354590		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
5UTR-3CDS	ENST00000540850	ENST00000594051		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
5UTR-3CDS	ENST00000540850	ENST00000600990		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000598840	ENST00000354590		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000598840	ENST00000594051		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000598840	ENST00000600990		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000270225	ENST00000354590		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000270225	ENST00000594051		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000270225	ENST00000600990		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000392776	ENST00000354590		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000392776	ENST00000594051		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000392776	ENST00000600990		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	SAE1	chr19	47646862	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000261716	ENST00000532485		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000261716	ENST00000530182		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000261716	ENST00000526597		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000261716	ENST00000533873		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000261716	ENST00000538157		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000261716	ENST00000544113		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
In-frame	ENST00000536202	ENST00000532485		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000536202	ENST00000530182		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000536202	ENST00000526597		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000536202	ENST00000533873		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000536202	ENST00000538157		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000536202	ENST00000544113		TCGA	RV	BRCA	TCGA-A1-A0SM-01A	TAOK1	chr17	27825539	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000438423	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000438423	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000438423	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000438423	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000438423	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-intron	ENST00000438423	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
Frame-shit	ENST00000267811	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000267811	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000267811	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000267811	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000267811	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-intron	ENST00000267811	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
Frame-shit	ENST00000452095	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000452095	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000452095	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000452095	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000452095	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-intron	ENST00000452095	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
Frame-shit	ENST00000333725	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000333725	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000333725	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000333725	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000333725	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-intron	ENST00000333725	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
Frame-shit	ENST00000557843	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000557843	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000557843	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000557843	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-5UTR	ENST00000557843	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
5CDS-intron	ENST00000557843	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-3CDS	ENST00000560764	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000560764	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000560764	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000560764	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000560764	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-intron	ENST00000560764	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-3CDS	ENST00000543579	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000543579	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000543579	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000543579	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000543579	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-intron	ENST00000543579	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-3CDS	ENST00000537840	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000537840	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000537840	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000537840	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000537840	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-intron	ENST00000537840	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-3CDS	ENST00000343827	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000343827	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000343827	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000343827	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000343827	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-intron	ENST00000343827	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-3CDS	ENST00000559710	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559710	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559710	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559710	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559710	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-intron	ENST00000559710	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-3CDS	ENST00000559703	ENST00000352903		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559703	ENST00000537232		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559703	ENST00000561221		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559703	ENST00000558083		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-5UTR	ENST00000559703	ENST00000559142		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
intron-intron	ENST00000559703	ENST00000560582		TCGA	RV	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56665639	+
Frame-shit	ENST00000368814	ENST00000368424		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	THEM4	chr1	151881836	-	DCST2	chr1	154999191	-
Frame-shit	ENST00000368814	ENST00000295536		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	THEM4	chr1	151881836	-	DCST2	chr1	154999191	-
intron-3CDS	ENST00000477437	ENST00000368424		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	THEM4	chr1	151881836	-	DCST2	chr1	154999191	-
intron-3CDS	ENST00000477437	ENST00000295536		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	THEM4	chr1	151881836	-	DCST2	chr1	154999191	-
Frame-shit	ENST00000489410	ENST00000368424		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	THEM4	chr1	151881836	-	DCST2	chr1	154999191	-
Frame-shit	ENST00000489410	ENST00000295536		TCGA	RV	BRCA	TCGA-C8-A3M8-01A	THEM4	chr1	151881836	-	DCST2	chr1	154999191	-
In-frame	ENST00000360843	ENST00000260956		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
In-frame	ENST00000360843	ENST00000409333		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
In-frame	ENST00000431350	ENST00000260956		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
In-frame	ENST00000431350	ENST00000409333		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
In-frame	ENST00000442919	ENST00000260956		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
In-frame	ENST00000442919	ENST00000409333		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
Frame-shit	ENST00000521943	ENST00000260956		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
Frame-shit	ENST00000521943	ENST00000409333		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
intron-3CDS	ENST00000434911	ENST00000260956		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
intron-3CDS	ENST00000434911	ENST00000409333		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
5UTR-3CDS	ENST00000486857	ENST00000260956		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
5UTR-3CDS	ENST00000486857	ENST00000409333		TCGA	RV	BRCA	TCGA-A8-A094-01A	TLK1	chr2	171939291	-	SSB	chr2	170661984	+
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	BRCA	TCGA-AC-A3W5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
5UTR-5UTR	ENST00000346141	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000346141	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000325752	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000325752	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000340993	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000340993	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000394239	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000394239	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000592426	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000592426	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000376094	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000376094	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000539018	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000539018	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000408971		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000359450		TCGA	RV	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57970058	-	TIAF1	chr17	27401932	-
Frame-shit	ENST00000435041	ENST00000369415		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	UBE2J1	chr6	90062258	-	RRAGD	chr6	90097309	-
5CDS-intron	ENST00000435041	ENST00000359203		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	UBE2J1	chr6	90062258	-	RRAGD	chr6	90097309	-
5CDS-5UTR	ENST00000435041	ENST00000492783		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	UBE2J1	chr6	90062258	-	RRAGD	chr6	90097309	-
Frame-shit	ENST00000526986	ENST00000334126		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
Frame-shit	ENST00000526986	ENST00000313663		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5CDS-intron	ENST00000526986	ENST00000542452		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5CDS-intron	ENST00000526986	ENST00000539061		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
In-frame	ENST00000310442	ENST00000334126		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
In-frame	ENST00000310442	ENST00000313663		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5CDS-intron	ENST00000310442	ENST00000542452		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5CDS-intron	ENST00000310442	ENST00000539061		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5UTR-3CDS	ENST00000525925	ENST00000334126		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5UTR-3CDS	ENST00000525925	ENST00000313663		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5UTR-intron	ENST00000525925	ENST00000542452		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
5UTR-intron	ENST00000525925	ENST00000539061		TCGA	RV	BRCA	TCGA-D8-A1JC-01A	ZDHHC24	chr11	66311175	-	C2CD3	chr11	73768589	-
In-frame	ENST00000301318	ENST00000417961		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
In-frame	ENST00000301318	ENST00000361573		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5CDS-5UTR	ENST00000301318	ENST00000541138		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5CDS-5UTR	ENST00000301318	ENST00000539601		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5CDS-intron	ENST00000301318	ENST00000490250		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
In-frame	ENST00000591844	ENST00000417961		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
In-frame	ENST00000591844	ENST00000361573		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5CDS-5UTR	ENST00000591844	ENST00000541138		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5CDS-5UTR	ENST00000591844	ENST00000539601		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5CDS-intron	ENST00000591844	ENST00000490250		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
intron-3CDS	ENST00000594386	ENST00000417961		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
intron-3CDS	ENST00000594386	ENST00000361573		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
intron-5UTR	ENST00000594386	ENST00000541138		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
intron-5UTR	ENST00000594386	ENST00000539601		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
intron-intron	ENST00000594386	ENST00000490250		TCGA	RV	BRCA	TCGA-C8-A273-01A	ZFP28	chr19	57061974	+	SLC9A8	chr20	48456078	+
5UTR-3CDS	ENST00000268251	ENST00000438132		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000268251	ENST00000542263		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000268251	ENST00000417362		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000268251	ENST00000251143		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000268251	ENST00000543152		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-3CDS	ENST00000268251	ENST00000448695		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-3UTR	ENST00000268251	ENST00000544275		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
5UTR-intron	ENST00000268251	ENST00000538853		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000396600	ENST00000438132		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000396600	ENST00000542263		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000396600	ENST00000417362		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000396600	ENST00000251143		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000396600	ENST00000543152		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000396600	ENST00000448695		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000396600	ENST00000544275		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-intron	ENST00000396600	ENST00000538853		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000563215	ENST00000438132		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000563215	ENST00000542263		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000563215	ENST00000417362		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000563215	ENST00000251143		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000563215	ENST00000543152		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000563215	ENST00000448695		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000563215	ENST00000544275		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-intron	ENST00000563215	ENST00000538853		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567812	ENST00000438132		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567812	ENST00000542263		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567812	ENST00000417362		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567812	ENST00000251143		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567812	ENST00000543152		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567812	ENST00000448695		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000567812	ENST00000544275		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-intron	ENST00000567812	ENST00000538853		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000425191	ENST00000438132		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000425191	ENST00000542263		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000425191	ENST00000417362		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000425191	ENST00000251143		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000425191	ENST00000543152		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000425191	ENST00000448695		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000425191	ENST00000544275		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-intron	ENST00000425191	ENST00000538853		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569156	ENST00000438132		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569156	ENST00000542263		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569156	ENST00000417362		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569156	ENST00000251143		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569156	ENST00000543152		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569156	ENST00000448695		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000569156	ENST00000544275		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-intron	ENST00000569156	ENST00000538853		TCGA	RV	BRCA	TCGA-AR-A0TX-01A	ABAT	chr16	8768568	+	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000595838	ENST00000252674		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
intron-intron	ENST00000595838	ENST00000585588		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
Frame-shit	ENST00000270328	ENST00000252674		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000270328	ENST00000585588		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
In-frame	ENST00000597188	ENST00000252674		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000597188	ENST00000585588		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
5UTR-3CDS	ENST00000596709	ENST00000252674		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
5UTR-intron	ENST00000596709	ENST00000585588		TCGA	RV	BRCA	TCGA-AC-A2B8-01A	ADAMTS10	chr19	8665812	-	MLLT1	chr19	6270770	-
In-frame	ENST00000347528	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000347528	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000347528	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000347528	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000289734	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000289734	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000289734	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000289734	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000379758	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000379758	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000379758	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000379758	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000396942	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000396942	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000396942	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000396942	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000396945	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000396945	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000396945	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000396945	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000352337	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000352337	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000352337	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000352337	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000265709	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000265709	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000265709	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
5CDS-intron	ENST00000265709	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-3CDS	ENST00000457297	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000457297	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000457297	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000457297	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-3CDS	ENST00000522231	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000522231	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000522231	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000522231	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-3CDS	ENST00000522543	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000522543	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000522543	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000522543	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-3CDS	ENST00000314214	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000314214	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000314214	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000314214	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-3CDS	ENST00000521407	ENST00000520720		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000521407	ENST00000441335		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000521407	ENST00000175238		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
intron-intron	ENST00000521407	ENST00000380789		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	ANK1	chr8	41591489	-	ADAM7	chr8	24384268	+
In-frame	ENST00000355303	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000355303	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000355303	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000355303	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000355303	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000355303	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000398543	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000398543	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000398543	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000398543	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000398543	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000398543	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000538023	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000538023	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000538023	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000538023	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000538023	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000538023	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000316296	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000316296	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000316296	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000316296	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000316296	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000316296	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000530676	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000530676	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000530676	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000530676	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000530676	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000530676	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000531349	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000531349	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000531349	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000531349	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000531349	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000531349	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
3UTR-3CDS	ENST00000525494	ENST00000287272		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
3UTR-3CDS	ENST00000525494	ENST00000453357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
3UTR-3CDS	ENST00000525494	ENST00000404895		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
3UTR-3CDS	ENST00000525494	ENST00000420357		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
3UTR-3CDS	ENST00000525494	ENST00000416672		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
3UTR-intron	ENST00000525494	ENST00000449677		TCGA	RV	BRCA	TCGA-E9-A228-01A	ANO1	chr11	70017145	+	UNC5D	chr8	35406810	+
In-frame	ENST00000538010	ENST00000295225		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000538010	ENST00000377181		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000538010	ENST00000360990		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000538010	ENST00000468529		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
In-frame	ENST00000261822	ENST00000295225		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000261822	ENST00000377181		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000261822	ENST00000360990		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000261822	ENST00000468529		TCGA	RV	BRCA	TCGA-AO-A03U-01B	BCL7A	chr12	122473333	+	KCNIP3	chr2	96040044	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26I-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3OD-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000359676	ENST00000278980		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000359676	ENST00000446419		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000475781	ENST00000278980		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000475781	ENST00000446419		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000326071	ENST00000278980		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000326071	ENST00000446419		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000375677	ENST00000278980		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000375677	ENST00000446419		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000375678	ENST00000278980		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000375678	ENST00000446419		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
Frame-shit	ENST00000201961	ENST00000278980		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
Frame-shit	ENST00000201961	ENST00000446419		TCGA	RV	BRCA	TCGA-A8-A08L-01A	C20orf112	chr20	31172372	-	COMMD7	chr20	31294562	-
Frame-shit	ENST00000545606	ENST00000333813		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	CAND1	chr12	67675833	+	TUSC5	chr17	1198785	+
intron-3CDS	ENST00000539109	ENST00000333813		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	CAND1	chr12	67675833	+	TUSC5	chr17	1198785	+
5CDS-intron	ENST00000254190	ENST00000536168		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
5CDS-intron	ENST00000254190	ENST00000373109		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
5CDS-intron	ENST00000254190	ENST00000317376		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
5CDS-intron	ENST00000254190	ENST00000460053		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
5CDS-intron	ENST00000254190	ENST00000412663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
intron-intron	ENST00000543813	ENST00000536168		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
intron-intron	ENST00000543813	ENST00000373109		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
intron-intron	ENST00000543813	ENST00000317376		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
intron-intron	ENST00000543813	ENST00000460053		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
intron-intron	ENST00000543813	ENST00000412663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	CHSY1	chr15	101775287	-	SPOCK2	chr10	73832668	-
Frame-shit	ENST00000371873	ENST00000367929		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
Frame-shit	ENST00000371873	ENST00000359567		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
5CDS-5UTR	ENST00000371873	ENST00000493550		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
Frame-shit	ENST00000450808	ENST00000367929		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
Frame-shit	ENST00000450808	ENST00000359567		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
5CDS-5UTR	ENST00000450808	ENST00000493550		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
Frame-shit	ENST00000471289	ENST00000367929		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
Frame-shit	ENST00000471289	ENST00000359567		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
5CDS-5UTR	ENST00000471289	ENST00000493550		TCGA	RV	BRCA	TCGA-A8-A06N-01A	CMPK1	chr1	47799788	+	SH2D1B	chr1	162372592	-
In-frame	ENST00000292782	ENST00000392455		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	DCUN1D1	chr3	182679014	-	CCDC50	chr3	191074877	+
In-frame	ENST00000292782	ENST00000392456		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	DCUN1D1	chr3	182679014	-	CCDC50	chr3	191074877	+
In-frame	ENST00000469954	ENST00000392455		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	DCUN1D1	chr3	182679014	-	CCDC50	chr3	191074877	+
In-frame	ENST00000469954	ENST00000392456		TCGA	RV	BRCA	TCGA-AO-A0JM-01A	DCUN1D1	chr3	182679014	-	CCDC50	chr3	191074877	+
3UTR-3CDS	ENST00000462274	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
3UTR-3CDS	ENST00000462274	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
3UTR-3CDS	ENST00000462274	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
3UTR-intron	ENST00000462274	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
5UTR-3CDS	ENST00000338785	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
5UTR-3CDS	ENST00000338785	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
5UTR-3CDS	ENST00000338785	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
5UTR-intron	ENST00000338785	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000451934	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000451934	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000451934	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-intron	ENST00000451934	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000321219	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000321219	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000321219	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-intron	ENST00000321219	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000339659	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000339659	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000339659	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-intron	ENST00000339659	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000398960	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000398960	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000398960	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-intron	ENST00000398960	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000398956	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000398956	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000398956	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-intron	ENST00000398956	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000455387	ENST00000159111		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000455387	ENST00000381759		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-3CDS	ENST00000455387	ENST00000536461		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
intron-intron	ENST00000455387	ENST00000592175		TCGA	RV	BRCA	TCGA-E2-A15A-01A	DYRK1A	chr21	38739930	+	KDM4B	chr19	5039847	+
5CDS-intron	ENST00000543086	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000543086	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000543086	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000543086	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000543086	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000546231	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000546231	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000546231	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000546231	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000546231	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000397203	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000397203	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000397203	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000397203	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000397203	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000360905	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000360905	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000360905	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000360905	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000360905	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000589028	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000589028	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000589028	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000589028	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000589028	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000355446	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000355446	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000355446	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000355446	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
5CDS-intron	ENST00000355446	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
3UTR-intron	ENST00000536573	ENST00000535651		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
3UTR-intron	ENST00000536573	ENST00000433979		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
3UTR-intron	ENST00000536573	ENST00000538779		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
3UTR-intron	ENST00000536573	ENST00000266497		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
3UTR-intron	ENST00000536573	ENST00000536967		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	ERC1	chr12	1299218	+	PIK3C2G	chr12	18641383	+
In-frame	ENST00000270530	ENST00000304076		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000270530	ENST00000602142		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000270530	ENST00000596764		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000270530	ENST00000539284		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000270530	ENST00000599806		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000538904	ENST00000304076		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000538904	ENST00000602142		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000538904	ENST00000596764		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000538904	ENST00000539284		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
In-frame	ENST00000538904	ENST00000599806		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
3UTR-3CDS	ENST00000600802	ENST00000304076		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
3UTR-3CDS	ENST00000600802	ENST00000602142		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
3UTR-3CDS	ENST00000600802	ENST00000596764		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
3UTR-3CDS	ENST00000600802	ENST00000539284		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
3UTR-3CDS	ENST00000600802	ENST00000599806		TCGA	RV	BRCA	TCGA-AQ-A54N-01A	EVI5L	chr19	7923217	+	VAV1	chr19	6843146	+
intron-5UTR	ENST00000411426	ENST00000317391		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
intron-5UTR	ENST00000411426	ENST00000300079		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
intron-intron	ENST00000411426	ENST00000524629		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
intron-5UTR	ENST00000529618	ENST00000317391		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
intron-5UTR	ENST00000529618	ENST00000300079		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
intron-intron	ENST00000529618	ENST00000524629		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
5CDS-5UTR	ENST00000343597	ENST00000317391		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
5CDS-5UTR	ENST00000343597	ENST00000300079		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
5CDS-intron	ENST00000343597	ENST00000524629		TCGA	RV	BRCA	TCGA-OL-A66P-01A	FAM111B	chr11	58877179	+	GLYATL1	chr11	58714519	+
In-frame	ENST00000287647	ENST00000353332		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000287647	ENST00000420925		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000287647	ENST00000296003		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000287647	ENST00000351233		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
In-frame	ENST00000383807	ENST00000353332		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000383807	ENST00000420925		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000383807	ENST00000296003		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000383807	ENST00000351233		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
In-frame	ENST00000383806	ENST00000353332		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000383806	ENST00000420925		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000383806	ENST00000296003		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000383806	ENST00000351233		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
In-frame	ENST00000419585	ENST00000353332		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000419585	ENST00000420925		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000419585	ENST00000296003		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000419585	ENST00000351233		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
In-frame	ENST00000431693	ENST00000353332		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000431693	ENST00000420925		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000431693	ENST00000296003		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5CDS-intron	ENST00000431693	ENST00000351233		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
intron-3CDS	ENST00000438741	ENST00000353332		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
intron-intron	ENST00000438741	ENST00000420925		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
intron-intron	ENST00000438741	ENST00000296003		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
intron-intron	ENST00000438741	ENST00000351233		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	FANCD2	chr3	10074656	+	MTMR14	chr3	9719001	+
5UTR-intron	ENST00000318789	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-intron	ENST00000475937	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-intron	ENST00000493089	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000484350	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-intron	ENST00000318779	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000491238	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000498215	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000468577	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000472382	ENST00000425534		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000389826		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000448225		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000295612		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000468147		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000421769		TCGA	RV	BRCA	TCGA-BH-A18V-06A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
Frame-shit	ENST00000437809	ENST00000361170		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000437809	ENST00000498755		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000368331	ENST00000361170		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000368331	ENST00000498755		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000271883	ENST00000361170		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000271883	ENST00000498755		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000361040	ENST00000361170		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000361040	ENST00000498755		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5UTR-3CDS	ENST00000471341	ENST00000361170		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5UTR-intron	ENST00000471341	ENST00000498755		TCGA	RV	BRCA	TCGA-EW-A1OW-01A	GON4L	chr1	155823067	-	IQGAP3	chr1	156510708	-
5UTR-3CDS	ENST00000453096	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000453096	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000453096	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000453096	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000453096	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000453096	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
3UTR-3CDS	ENST00000531757	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
3UTR-3CDS	ENST00000531757	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
3UTR-3CDS	ENST00000531757	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
3UTR-intron	ENST00000531757	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
3UTR-intron	ENST00000531757	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
3UTR-intron	ENST00000531757	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000534641	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000534641	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000534641	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000534641	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000534641	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000534641	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000265963	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000265963	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-3CDS	ENST00000265963	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000265963	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000265963	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5UTR-intron	ENST00000265963	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000524753	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000524753	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000524753	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000524753	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000524753	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000524753	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000530496	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000530496	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000530496	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000530496	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000530496	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000530496	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000526630	ENST00000396253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000526630	ENST00000349215		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-3CDS	ENST00000526630	ENST00000438420		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000526630	ENST00000537258		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000526630	ENST00000352460		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
intron-intron	ENST00000526630	ENST00000531848		TCGA	RV	BRCA	TCGA-A8-A06U-01A	GTF2H1	chr11	18344287	+	HPS5	chr11	18318531	-
5CDS-5UTR	ENST00000504156	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-intron	ENST00000504156	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000504156	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000504156	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000457527	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-intron	ENST00000457527	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000457527	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000457527	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000431330	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-intron	ENST00000431330	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000431330	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000431330	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
intron-5UTR	ENST00000504366	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
intron-intron	ENST00000504366	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
intron-5UTR	ENST00000504366	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
intron-5UTR	ENST00000504366	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5UTR-5UTR	ENST00000448240	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5UTR-intron	ENST00000448240	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5UTR-5UTR	ENST00000448240	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5UTR-5UTR	ENST00000448240	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000307633	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-intron	ENST00000307633	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000307633	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000307633	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000438307	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-intron	ENST00000438307	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000438307	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000438307	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000415192	ENST00000434981		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-intron	ENST00000415192	ENST00000507506		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000415192	ENST00000239906		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
5CDS-5UTR	ENST00000415192	ENST00000513056		TCGA	RV	BRCA	TCGA-E9-A1RC-01A	HARS	chr5	140070440	-	FAM53C	chr5	137676873	+
In-frame	ENST00000295101	ENST00000392825		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
In-frame	ENST00000295101	ENST00000409237		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
5CDS-3UTR	ENST00000295101	ENST00000487047		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
intron-3CDS	ENST00000544049	ENST00000392825		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
intron-3CDS	ENST00000544049	ENST00000409237		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
intron-3UTR	ENST00000544049	ENST00000487047		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
3UTR-3CDS	ENST00000493505	ENST00000392825		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
3UTR-3CDS	ENST00000493505	ENST00000409237		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
3UTR-3UTR	ENST00000493505	ENST00000487047		TCGA	RV	BRCA	TCGA-BH-A1FM-01A	KCNJ3	chr2	155566331	+	GALNT13	chr2	155252503	+
In-frame	ENST00000444761	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
In-frame	ENST00000444761	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000444761	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
In-frame	ENST00000409105	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
In-frame	ENST00000409105	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409105	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409913	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409913	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409913	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000319466	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000319466	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000319466	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409800	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409800	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409800	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
intron-3CDS	ENST00000493804	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
intron-3CDS	ENST00000493804	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
intron-5UTR	ENST00000493804	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
In-frame	ENST00000409207	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
In-frame	ENST00000409207	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409207	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409973	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409973	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409973	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409147	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409147	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409147	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409218	ENST00000263736		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
Frame-shit	ENST00000409218	ENST00000535761		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
5CDS-5UTR	ENST00000409218	ENST00000490133		TCGA	RV	BRCA	TCGA-AR-A24H-01A	MCFD2	chr2	47134949	-	SRBD1	chr2	45647033	-
In-frame	ENST00000354577	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000354577	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000354577	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000354577	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000403834	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000403834	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000403834	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000403834	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000368068	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368068	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000368068	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368068	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-3CDS	ENST00000479213	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000479213	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-5UTR	ENST00000479213	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000479213	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000368060	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368060	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000368060	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368060	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000368058	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368058	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000368058	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368058	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-3CDS	ENST00000545957	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000545957	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-5UTR	ENST00000545957	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000545957	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000368053	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368053	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000368053	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000368053	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000540546	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000540546	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000540546	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000540546	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
Frame-shit	ENST00000539158	ENST00000369261		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000539158	ENST00000536676		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000539158	ENST00000544166		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000539158	ENST00000539200		TCGA	RV	BRCA	TCGA-AR-A0TW-01A	MED23	chr6	131939547	-	KLHL32	chr6	97489368	+
In-frame	ENST00000566983	ENST00000219638		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000566983	ENST00000395878		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000566983	ENST00000567212		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-intron	ENST00000566983	ENST00000567264		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-3UTR	ENST00000566983	ENST00000571064		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000268261	ENST00000219638		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000268261	ENST00000395878		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000268261	ENST00000567212		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-intron	ENST00000268261	ENST00000567264		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-3UTR	ENST00000268261	ENST00000571064		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000539622	ENST00000219638		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000539622	ENST00000395878		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000539622	ENST00000567212		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-intron	ENST00000539622	ENST00000567264		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-3UTR	ENST00000539622	ENST00000571064		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000537352	ENST00000219638		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000537352	ENST00000395878		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000537352	ENST00000567212		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-intron	ENST00000537352	ENST00000567264		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-3UTR	ENST00000537352	ENST00000571064		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000569958	ENST00000219638		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000569958	ENST00000395878		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000569958	ENST00000567212		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-intron	ENST00000569958	ENST00000567264		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
5CDS-3UTR	ENST00000569958	ENST00000571064		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
intron-3CDS	ENST00000565837	ENST00000219638		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
intron-3CDS	ENST00000565837	ENST00000395878		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
intron-3CDS	ENST00000565837	ENST00000567212		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
intron-intron	ENST00000565837	ENST00000567264		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
intron-3UTR	ENST00000565837	ENST00000571064		TCGA	RV	BRCA	TCGA-E9-A5FL-01A	PMM2	chr16	8906963	+	UBFD1	chr16	23573527	+
In-frame	ENST00000228705	ENST00000543942		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPM1H	chr12	63060958	-	C12orf56	chr12	64671583	-
In-frame	ENST00000228705	ENST00000333722		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPM1H	chr12	63060958	-	C12orf56	chr12	64671583	-
5CDS-5UTR	ENST00000228705	ENST00000536975		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPM1H	chr12	63060958	-	C12orf56	chr12	64671583	-
5UTR-3CDS	ENST00000551214	ENST00000543942		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPM1H	chr12	63060958	-	C12orf56	chr12	64671583	-
5UTR-3CDS	ENST00000551214	ENST00000333722		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPM1H	chr12	63060958	-	C12orf56	chr12	64671583	-
5UTR-5UTR	ENST00000551214	ENST00000536975		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPM1H	chr12	63060958	-	C12orf56	chr12	64671583	-
In-frame	ENST00000246794	ENST00000221466		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
In-frame	ENST00000246794	ENST00000426395		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
5CDS-3UTR	ENST00000246794	ENST00000594823		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
5CDS-intron	ENST00000246794	ENST00000599988		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
5CDS-intron	ENST00000246794	ENST00000596975		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
intron-3CDS	ENST00000596700	ENST00000221466		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
intron-3CDS	ENST00000596700	ENST00000426395		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
intron-3UTR	ENST00000596700	ENST00000594823		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
intron-intron	ENST00000596700	ENST00000599988		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
intron-intron	ENST00000596700	ENST00000596975		TCGA	RV	BRCA	TCGA-A8-A08P-01A	PRRG2	chr19	50087209	+	FCGRT	chr19	50027764	+
5CDS-5UTR	ENST00000338961	ENST00000473039		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5CDS-5UTR	ENST00000338961	ENST00000373624		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5CDS-5UTR	ENST00000338961	ENST00000542603		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5CDS-5UTR	ENST00000338961	ENST00000394219		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5CDS-5UTR	ENST00000338961	ENST00000373620		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5CDS-5UTR	ENST00000338961	ENST00000394215		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5CDS-5UTR	ENST00000338961	ENST00000373618		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000473039		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000373624		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000542603		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000394219		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000373620		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000394215		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
intron-5UTR	ENST00000277462	ENST00000373618		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000473039		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000373624		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000542603		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000394219		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000373620		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000394215		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
5UTR-5UTR	ENST00000483625	ENST00000373618		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	PTGES2	chr9	130889718	-	DENND1A	chr9	126345549	-
In-frame	ENST00000439268	ENST00000382758		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
In-frame	ENST00000439268	ENST00000382754		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
5CDS-intron	ENST00000439268	ENST00000460374		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
In-frame	ENST00000340578	ENST00000382758		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
In-frame	ENST00000340578	ENST00000382754		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
5CDS-intron	ENST00000340578	ENST00000460374		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000541471	ENST00000382758		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000541471	ENST00000382754		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-intron	ENST00000541471	ENST00000460374		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000591092	ENST00000382758		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000591092	ENST00000382754		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-intron	ENST00000591092	ENST00000460374		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000034275	ENST00000382758		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000034275	ENST00000382754		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-intron	ENST00000034275	ENST00000460374		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000591124	ENST00000382758		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-3CDS	ENST00000591124	ENST00000382754		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
intron-intron	ENST00000591124	ENST00000460374		TCGA	RV	BRCA	TCGA-MS-A51U-01A	RANBP3	chr19	5951404	-	N6AMT2	chr13	21311944	-
5UTR-3CDS	ENST00000426256	ENST00000404699		TCGA	RV	BRCA	TCGA-AC-A3YI-01A	RNF185	chr22	31556289	+	ISX	chr22	35478511	+
5UTR-3CDS	ENST00000426256	ENST00000308700		TCGA	RV	BRCA	TCGA-AC-A3YI-01A	RNF185	chr22	31556289	+	ISX	chr22	35478511	+
5UTR-3CDS	ENST00000326132	ENST00000404699		TCGA	RV	BRCA	TCGA-AC-A3YI-01A	RNF185	chr22	31556289	+	ISX	chr22	35478511	+
5UTR-3CDS	ENST00000326132	ENST00000308700		TCGA	RV	BRCA	TCGA-AC-A3YI-01A	RNF185	chr22	31556289	+	ISX	chr22	35478511	+
5UTR-3CDS	ENST00000266252	ENST00000404699		TCGA	RV	BRCA	TCGA-AC-A3YI-01A	RNF185	chr22	31556289	+	ISX	chr22	35478511	+
5UTR-3CDS	ENST00000266252	ENST00000308700		TCGA	RV	BRCA	TCGA-AC-A3YI-01A	RNF185	chr22	31556289	+	ISX	chr22	35478511	+
Frame-shit	ENST00000361757	ENST00000373710		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000361757	ENST00000536859		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000361757	ENST00000373709		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000361757	ENST00000536384		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000361757	ENST00000491976		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000587024	ENST00000373710		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000587024	ENST00000536859		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000587024	ENST00000373709		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000587024	ENST00000536384		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000587024	ENST00000491976		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000438103	ENST00000373710		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000438103	ENST00000536859		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000438103	ENST00000373709		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000438103	ENST00000536384		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000438103	ENST00000491976		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	SERINC2	chr1	31905814	+
In-frame	ENST00000321276	ENST00000370205		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	SGPP2	chr2	223389752	+	ALG14	chr1	95492816	-
5CDS-intron	ENST00000321276	ENST00000495856		TCGA	RV	BRCA	TCGA-B6-A0RE-01A	SGPP2	chr2	223389752	+	ALG14	chr1	95492816	-
In-frame	ENST00000369503	ENST00000355303		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
In-frame	ENST00000369503	ENST00000398543		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
In-frame	ENST00000369503	ENST00000538023		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
In-frame	ENST00000369503	ENST00000316296		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
In-frame	ENST00000369503	ENST00000530676		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
In-frame	ENST00000369503	ENST00000531349		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
5CDS-intron	ENST00000369503	ENST00000525494		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-3CDS	ENST00000369502	ENST00000355303		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-3CDS	ENST00000369502	ENST00000398543		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-3CDS	ENST00000369502	ENST00000538023		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-3CDS	ENST00000369502	ENST00000316296		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-3CDS	ENST00000369502	ENST00000530676		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-3CDS	ENST00000369502	ENST00000531349		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
intron-intron	ENST00000369502	ENST00000525494		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-3CDS	ENST00000481127	ENST00000355303		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-3CDS	ENST00000481127	ENST00000398543		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-3CDS	ENST00000481127	ENST00000538023		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-3CDS	ENST00000481127	ENST00000316296		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-3CDS	ENST00000481127	ENST00000530676		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-3CDS	ENST00000481127	ENST00000531349		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
3UTR-intron	ENST00000481127	ENST00000525494		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	SLC22A15	chr1	116580009	+	ANO1	chr11	69995816	+
In-frame	ENST00000262013	ENST00000336915		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
In-frame	ENST00000262013	ENST00000584924		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
In-frame	ENST00000505279	ENST00000336915		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
In-frame	ENST00000505279	ENST00000584924		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
In-frame	ENST00000357122	ENST00000336915		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
In-frame	ENST00000357122	ENST00000584924		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
intron-3CDS	ENST00000509724	ENST00000336915		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
intron-3CDS	ENST00000509724	ENST00000584924		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
intron-3CDS	ENST00000510283	ENST00000336915		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
intron-3CDS	ENST00000510283	ENST00000584924		TCGA	RV	BRCA	TCGA-EW-A1OV-01A	SPAG9	chr17	49156945	-	SKAP1	chr17	46266862	-
Frame-shit	ENST00000367090	ENST00000274901		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000367090	ENST00000398661		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000367090	ENST00000370850		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000367090	ENST00000508459		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000367090	ENST00000308161		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
5CDS-intron	ENST00000367090	ENST00000428842		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
5CDS-intron	ENST00000367090	ENST00000358072		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
5CDS-5UTR	ENST00000367090	ENST00000507223		TCGA	RV	BRCA	TCGA-A8-A08R-01A	TMEM181	chr6	159029782	+	HMGCLL1	chr6	55304357	-
intron-3CDS	ENST00000447733	ENST00000335272		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
intron-3CDS	ENST00000447733	ENST00000320996		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
intron-3CDS	ENST00000447733	ENST00000455418		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000449058	ENST00000335272		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000449058	ENST00000320996		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000449058	ENST00000455418		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000425375	ENST00000335272		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000425375	ENST00000320996		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000425375	ENST00000455418		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000411850	ENST00000335272		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000411850	ENST00000320996		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
Frame-shit	ENST00000411850	ENST00000455418		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5UTR-3CDS	ENST00000436462	ENST00000335272		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5UTR-3CDS	ENST00000436462	ENST00000320996		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5UTR-3CDS	ENST00000436462	ENST00000455418		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5UTR-3CDS	ENST00000382034	ENST00000335272		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5UTR-3CDS	ENST00000382034	ENST00000320996		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5UTR-3CDS	ENST00000382034	ENST00000455418		TCGA	RV	BRCA	TCGA-A8-A06N-01A	TOM1	chr22	35695973	+	PITPNB	chr22	28293880	-
5CDS-intron	ENST00000361658	ENST00000586702		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000361658	ENST00000294618		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000361658	ENST00000319867		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000395544	ENST00000586702		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000395544	ENST00000294618		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000395544	ENST00000319867		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5UTR-intron	ENST00000580130	ENST00000586702		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5UTR-intron	ENST00000580130	ENST00000294618		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5UTR-intron	ENST00000580130	ENST00000319867		TCGA	RV	BRCA	TCGA-AN-A0XT-01A	ULK2	chr17	19741814	-	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000338110	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000338110	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000338110	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000338110	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000338110	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000338110	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000338110	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000395248	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000575627	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000566897	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569545	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000563060	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000412304	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
3UTR-intron	ENST00000564546	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000564595	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000569798	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000257261		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000522056		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000278840		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000521849		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000574708		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000522639		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
intron-intron	ENST00000395240	ENST00000517839		TCGA	RV	BRCA	TCGA-AR-A1AS-01A	ALDOA	chr16	30081734	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000334344	ENST00000332149		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000334344	ENST00000398585		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000334344	ENST00000458356		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000334344	ENST00000497881		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000422737	ENST00000332149		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000422737	ENST00000398585		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000422737	ENST00000458356		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000422737	ENST00000497881		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
3UTR-intron	ENST00000479608	ENST00000332149		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
3UTR-intron	ENST00000479608	ENST00000398585		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
3UTR-intron	ENST00000479608	ENST00000458356		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
3UTR-intron	ENST00000479608	ENST00000497881		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000444670	ENST00000332149		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000444670	ENST00000398585		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000444670	ENST00000458356		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
5CDS-intron	ENST00000444670	ENST00000497881		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
intron-intron	ENST00000457135	ENST00000332149		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
intron-intron	ENST00000457135	ENST00000398585		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
intron-intron	ENST00000457135	ENST00000458356		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
intron-intron	ENST00000457135	ENST00000497881		TCGA	RV	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902145	-
3UTR-3CDS	ENST00000521282	ENST00000250495		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
3UTR-3CDS	ENST00000521282	ENST00000524927		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
3UTR-intron	ENST00000521282	ENST00000533242		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
In-frame	ENST00000432471	ENST00000250495		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
In-frame	ENST00000432471	ENST00000524927		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
5CDS-intron	ENST00000432471	ENST00000533242		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
In-frame	ENST00000287322	ENST00000250495		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
In-frame	ENST00000287322	ENST00000524927		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
5CDS-intron	ENST00000287322	ENST00000533242		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	BAG4	chr8	38034657	+	NEDD8	chr14	24687637	-
Frame-shit	ENST00000305877	ENST00000424001		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
Frame-shit	ENST00000305877	ENST00000436272		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000545852		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000421747		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000552103		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000305877	ENST00000547195		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000305877	ENST00000423302		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000558540		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000541483		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000531107		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000305877	ENST00000527509		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000534266		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000305877	ENST00000532037		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
Frame-shit	ENST00000359540	ENST00000424001		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
Frame-shit	ENST00000359540	ENST00000436272		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000545852		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000421747		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000552103		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000359540	ENST00000547195		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000359540	ENST00000423302		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000558540		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000541483		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000531107		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000359540	ENST00000527509		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000534266		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000359540	ENST00000532037		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
Frame-shit	ENST00000398512	ENST00000424001		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
Frame-shit	ENST00000398512	ENST00000436272		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000545852		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000421747		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000552103		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000398512	ENST00000547195		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000398512	ENST00000423302		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000558540		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000541483		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000531107		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-intron	ENST00000398512	ENST00000527509		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000534266		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
5CDS-5UTR	ENST00000398512	ENST00000532037		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-3CDS	ENST00000436990	ENST00000424001		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-3CDS	ENST00000436990	ENST00000436272		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000545852		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000421747		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000552103		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-intron	ENST00000436990	ENST00000547195		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-intron	ENST00000436990	ENST00000423302		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000558540		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000541483		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000531107		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-intron	ENST00000436990	ENST00000527509		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000534266		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
intron-5UTR	ENST00000436990	ENST00000532037		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	BCR	chr22	23524426	+	MRVI1	chr11	10673729	-
Frame-shit	ENST00000341394	ENST00000263401		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000341394	ENST00000452374		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000341394	ENST00000532705		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
5CDS-intron	ENST00000341394	ENST00000533308		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000389645	ENST00000263401		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000389645	ENST00000452374		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000389645	ENST00000532705		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
5CDS-intron	ENST00000389645	ENST00000533308		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000532820	ENST00000263401		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000532820	ENST00000452374		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000532820	ENST00000532705		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
5CDS-intron	ENST00000532820	ENST00000533308		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000530820	ENST00000263401		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000530820	ENST00000452374		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000530820	ENST00000532705		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
5CDS-intron	ENST00000530820	ENST00000533308		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000529307	ENST00000263401		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000529307	ENST00000452374		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
Frame-shit	ENST00000529307	ENST00000532705		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
5CDS-intron	ENST00000529307	ENST00000533308		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
intron-3CDS	ENST00000533657	ENST00000263401		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
intron-3CDS	ENST00000533657	ENST00000452374		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
intron-3CDS	ENST00000533657	ENST00000532705		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
intron-intron	ENST00000533657	ENST00000533308		TCGA	RV	BRCA	TCGA-BH-A0E2-01A	CAPRIN1	chr11	34104588	+	COMMD9	chr11	36297790	-
In-frame	ENST00000271332	ENST00000234677		TCGA	RV	BRCA	TCGA-BH-A208-01A	CELSR2	chr1	109816292	+	SARS	chr1	109780353	+
Frame-shit	ENST00000271332	ENST00000369923		TCGA	RV	BRCA	TCGA-BH-A208-01A	CELSR2	chr1	109816292	+	SARS	chr1	109780353	+
5CDS-3UTR	ENST00000271332	ENST00000468588		TCGA	RV	BRCA	TCGA-BH-A208-01A	CELSR2	chr1	109816292	+	SARS	chr1	109780353	+
3UTR-3CDS	ENST00000498157	ENST00000234677		TCGA	RV	BRCA	TCGA-BH-A208-01A	CELSR2	chr1	109816292	+	SARS	chr1	109780353	+
3UTR-3CDS	ENST00000498157	ENST00000369923		TCGA	RV	BRCA	TCGA-BH-A208-01A	CELSR2	chr1	109816292	+	SARS	chr1	109780353	+
3UTR-3UTR	ENST00000498157	ENST00000468588		TCGA	RV	BRCA	TCGA-BH-A208-01A	CELSR2	chr1	109816292	+	SARS	chr1	109780353	+
5CDS-intron	ENST00000491148	ENST00000322776		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491148	ENST00000532303		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491148	ENST00000529927		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491148	ENST00000415352		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000491148	ENST00000526169		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000282957	ENST00000322776		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000282957	ENST00000532303		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000282957	ENST00000529927		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000282957	ENST00000415352		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000282957	ENST00000526169		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000498639	ENST00000322776		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000498639	ENST00000532303		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000498639	ENST00000529927		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000498639	ENST00000415352		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000498639	ENST00000526169		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	CPB1	chr3	148577970	+	NDUFV1	chr11	67375697	+
In-frame	ENST00000578681	ENST00000259008		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000578681	ENST00000577598		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
5CDS-intron	ENST00000578681	ENST00000583837		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000583590	ENST00000259008		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000583590	ENST00000577598		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
5CDS-intron	ENST00000583590	ENST00000583837		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000359353	ENST00000259008		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000359353	ENST00000577598		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
5CDS-intron	ENST00000359353	ENST00000583837		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000389924	ENST00000259008		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000389924	ENST00000577598		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
5CDS-intron	ENST00000389924	ENST00000583837		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000457800	ENST00000259008		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
In-frame	ENST00000457800	ENST00000577598		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
5CDS-intron	ENST00000457800	ENST00000583837		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
intron-3CDS	ENST00000582985	ENST00000259008		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
intron-3CDS	ENST00000582985	ENST00000577598		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
intron-intron	ENST00000582985	ENST00000583837		TCGA	RV	BRCA	TCGA-A2-A25B-01A	DDX42	chr17	61884014	+	BRIP1	chr17	59886118	-
5UTR-3CDS	ENST00000466152	ENST00000337147		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
5UTR-3CDS	ENST00000466152	ENST00000367075		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
5UTR-3CDS	ENST00000466152	ENST00000392177		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
5UTR-intron	ENST00000466152	ENST00000476189		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371588	ENST00000337147		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371588	ENST00000367075		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371588	ENST00000392177		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
5CDS-intron	ENST00000371588	ENST00000476189		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371582	ENST00000337147		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371582	ENST00000367075		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371582	ENST00000392177		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
5CDS-intron	ENST00000371582	ENST00000476189		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371583	ENST00000337147		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371583	ENST00000367075		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
Frame-shit	ENST00000371583	ENST00000392177		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
5CDS-intron	ENST00000371583	ENST00000476189		TCGA	RV	BRCA	TCGA-BH-A0B2-01A	DPM1	chr20	49574900	-	EZR	chr6	159197536	-
In-frame	ENST00000264211	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000264211	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000264211	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000264211	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000264211	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000264211	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000400422	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000400422	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000400422	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000400422	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000400422	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000400422	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000602326	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000602326	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000602326	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000602326	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000602326	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000602326	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374935	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374935	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374935	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374935	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374935	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000374935	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374937	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374937	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374937	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374937	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000374937	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000374937	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000536266	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000536266	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000536266	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000536266	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000536266	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-5UTR	ENST00000536266	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000374933	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000374933	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000374933	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000374933	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000374933	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-5UTR	ENST00000374933	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000544689	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000544689	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000544689	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000544689	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000544689	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-5UTR	ENST00000544689	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000356916	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000356916	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000356916	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000356916	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
In-frame	ENST00000356916	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000356916	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000374927	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000374927	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000374927	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000374927	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000374927	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
5CDS-5UTR	ENST00000374927	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000537738	ENST00000374761		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000537738	ENST00000290101		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000537738	ENST00000374763		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000537738	ENST00000374765		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-3CDS	ENST00000537738	ENST00000542643		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
intron-5UTR	ENST00000537738	ENST00000374757		TCGA	RV	BRCA	TCGA-AN-A0FJ-01A	EIF4G3	chr1	21329206	-	RAP1GAP	chr1	21945565	-
Frame-shit	ENST00000583610	ENST00000318217		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000583610	ENST00000394649		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000583610	ENST00000579584		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000583610	ENST00000584232		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000583610	ENST00000583621		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000394294	ENST00000318217		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000394294	ENST00000394649		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000394294	ENST00000579584		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000394294	ENST00000584232		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000394294	ENST00000583621		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000264658	ENST00000318217		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000264658	ENST00000394649		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000264658	ENST00000579584		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000264658	ENST00000584232		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000264658	ENST00000583621		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000577399	ENST00000318217		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000577399	ENST00000394649		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000577399	ENST00000579584		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000577399	ENST00000584232		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000577399	ENST00000583621		TCGA	RV	BRCA	TCGA-A8-A08S-01A	FBXL20	chr17	37457254	-	MYO1D	chr17	31107802	-
In-frame	ENST00000393562	ENST00000360256		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
In-frame	ENST00000393562	ENST00000330287		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5CDS-intron	ENST00000393562	ENST00000483822		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
Frame-shit	ENST00000369620	ENST00000360256		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
Frame-shit	ENST00000369620	ENST00000330287		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5CDS-intron	ENST00000369620	ENST00000483822		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
Frame-shit	ENST00000393564	ENST00000360256		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
Frame-shit	ENST00000393564	ENST00000330287		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5CDS-intron	ENST00000393564	ENST00000483822		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5UTR-3CDS	ENST00000497281	ENST00000360256		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5UTR-3CDS	ENST00000497281	ENST00000330287		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5UTR-intron	ENST00000497281	ENST00000483822		TCGA	RV	BRCA	TCGA-BH-A0B5-01A	G6PD	chrX	153774251	-	F8	chrX	154091502	-
5CDS-intron	ENST00000524189	ENST00000441293		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-5UTR	ENST00000524189	ENST00000314728		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-5UTR	ENST00000524189	ENST00000347697		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000524189	ENST00000395618		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000524189	ENST00000575595		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000524189	ENST00000395620		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000524189	ENST00000395626		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000524189	ENST00000571254		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000521515	ENST00000441293		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-5UTR	ENST00000521515	ENST00000314728		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-5UTR	ENST00000521515	ENST00000347697		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000521515	ENST00000395618		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000521515	ENST00000575595		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000521515	ENST00000395620		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000521515	ENST00000395626		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
5CDS-intron	ENST00000521515	ENST00000571254		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-intron	ENST00000404075	ENST00000441293		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-5UTR	ENST00000404075	ENST00000314728		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-5UTR	ENST00000404075	ENST00000347697		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-intron	ENST00000404075	ENST00000395618		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-intron	ENST00000404075	ENST00000575595		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-intron	ENST00000404075	ENST00000395620		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-intron	ENST00000404075	ENST00000395626		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
intron-intron	ENST00000404075	ENST00000571254		TCGA	RV	BRCA	TCGA-B6-A0WV-01A	KIF13B	chr8	29102863	-	EPN2	chr17	19185268	+
In-frame	ENST00000399503	ENST00000437198		TCGA	RV	BRCA	TCGA-E9-A22E-01A	MAP3K1	chr5	56111882	+	PARN	chr16	14540938	-
In-frame	ENST00000399503	ENST00000420015		TCGA	RV	BRCA	TCGA-E9-A22E-01A	MAP3K1	chr5	56111882	+	PARN	chr16	14540938	-
In-frame	ENST00000399503	ENST00000341484		TCGA	RV	BRCA	TCGA-E9-A22E-01A	MAP3K1	chr5	56111882	+	PARN	chr16	14540938	-
In-frame	ENST00000399503	ENST00000539279		TCGA	RV	BRCA	TCGA-E9-A22E-01A	MAP3K1	chr5	56111882	+	PARN	chr16	14540938	-
5CDS-intron	ENST00000399503	ENST00000566021		TCGA	RV	BRCA	TCGA-E9-A22E-01A	MAP3K1	chr5	56111882	+	PARN	chr16	14540938	-
Frame-shit	ENST00000216181	ENST00000300105		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MYH9	chr22	36722613	-	CACNG2	chr22	36962540	-
5CDS-intron	ENST00000216181	ENST00000480002		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MYH9	chr22	36722613	-	CACNG2	chr22	36962540	-
intron-3CDS	ENST00000475726	ENST00000300105		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MYH9	chr22	36722613	-	CACNG2	chr22	36962540	-
intron-intron	ENST00000475726	ENST00000480002		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MYH9	chr22	36722613	-	CACNG2	chr22	36962540	-
Frame-shit	ENST00000401701	ENST00000300105		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MYH9	chr22	36722613	-	CACNG2	chr22	36962540	-
5CDS-intron	ENST00000401701	ENST00000480002		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MYH9	chr22	36722613	-	CACNG2	chr22	36962540	-
In-frame	ENST00000281038	ENST00000361337		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	NARS2	chr11	78239888	-	TOP1	chr20	39721112	+
In-frame	ENST00000528850	ENST00000361337		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	NARS2	chr11	78239888	-	TOP1	chr20	39721112	+
5UTR-3CDS	ENST00000252575	ENST00000291442		TCGA	RV	BRCA	TCGA-E9-A1RG-01A	NCAN	chr19	19322873	+	NR2F6	chr19	17351574	-
intron-3CDS	ENST00000538881	ENST00000291442		TCGA	RV	BRCA	TCGA-E9-A1RG-01A	NCAN	chr19	19322873	+	NR2F6	chr19	17351574	-
5UTR-3CDS	ENST00000356341	ENST00000282251		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
5UTR-3CDS	ENST00000356341	ENST00000433523		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000530617	ENST00000282251		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000530617	ENST00000433523		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
5UTR-3CDS	ENST00000278568	ENST00000282251		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
5UTR-3CDS	ENST00000278568	ENST00000433523		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000528203	ENST00000282251		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000528203	ENST00000433523		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000525542	ENST00000282251		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000525542	ENST00000433523		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	CWF19L2	chr11	107326502	-
5CDS-intron	ENST00000420696	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000420696	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000420696	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000420696	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000420696	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000420696	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000420696	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000401534	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000559240	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000367897	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540236	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000560641	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000474046	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
intron-intron	ENST00000485769	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000537040		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000451864		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000400992		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000368246		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000255013		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000368249		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5CDS-intron	ENST00000540246	ENST00000494874		TCGA	RV	BRCA	TCGA-C8-A278-01A	PBX1	chr1	164781386	+	RHBG	chr1	156354318	+
5UTR-3CDS	ENST00000342362	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
5UTR-3CDS	ENST00000342362	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
5UTR-3CDS	ENST00000382002	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
5UTR-3CDS	ENST00000382002	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000231423	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000231423	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000513753	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000513753	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000397391	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000397391	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000348262	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000348262	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000542609	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000542609	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000310101	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000310101	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000511486	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000511486	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000509934	ENST00000377801		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000509934	ENST00000328457		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PRLR	chr5	35230370	-	PLCXD3	chr5	41382636	-
5CDS-intron	ENST00000336451	ENST00000414563		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
5CDS-intron	ENST00000336451	ENST00000359775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
5CDS-3UTR	ENST00000336451	ENST00000341375		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
5CDS-intron	ENST00000367303	ENST00000414563		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
5CDS-intron	ENST00000367303	ENST00000359775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
5CDS-3UTR	ENST00000367303	ENST00000341375		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
intron-intron	ENST00000491268	ENST00000414563		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
intron-intron	ENST00000491268	ENST00000359775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
intron-3UTR	ENST00000491268	ENST00000341375		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	RMND1	chr6	151738414	-	ZDHHC14	chr6	158093756	+
5CDS-intron	ENST00000443572	ENST00000346141		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000443572	ENST00000325752		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000443572	ENST00000340993		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000443572	ENST00000394239		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000443572	ENST00000592426		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000443572	ENST00000376094		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000443572	ENST00000539018		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000443572	ENST00000591611		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000406116	ENST00000346141		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000406116	ENST00000325752		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000406116	ENST00000340993		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000406116	ENST00000394239		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000406116	ENST00000592426		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000406116	ENST00000376094		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000406116	ENST00000539018		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000406116	ENST00000591611		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000225577	ENST00000346141		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000225577	ENST00000325752		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000225577	ENST00000340993		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000225577	ENST00000394239		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000225577	ENST00000592426		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000225577	ENST00000376094		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000225577	ENST00000539018		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000225577	ENST00000591611		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-intron	ENST00000393021	ENST00000346141		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-intron	ENST00000393021	ENST00000325752		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-intron	ENST00000393021	ENST00000340993		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-intron	ENST00000393021	ENST00000394239		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-intron	ENST00000393021	ENST00000592426		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-intron	ENST00000393021	ENST00000376094		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-5UTR	ENST00000393021	ENST00000539018		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
5UTR-5UTR	ENST00000393021	ENST00000591611		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000587061	ENST00000346141		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000587061	ENST00000325752		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000587061	ENST00000340993		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000587061	ENST00000394239		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000587061	ENST00000592426		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000587061	ENST00000376094		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-5UTR	ENST00000587061	ENST00000539018		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
intron-5UTR	ENST00000587061	ENST00000591611		TCGA	RV	BRCA	TCGA-C8-A273-01A	RPS6KB1	chr17	57970686	+	TUBD1	chr17	57955695	-
Frame-shit	ENST00000308488	ENST00000285667		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5CDS-5UTR	ENST00000308488	ENST00000544452		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5CDS-5UTR	ENST00000308488	ENST00000478035		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
Frame-shit	ENST00000360355	ENST00000285667		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5CDS-5UTR	ENST00000360355	ENST00000544452		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5CDS-5UTR	ENST00000360355	ENST00000478035		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
intron-3CDS	ENST00000480887	ENST00000285667		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
intron-5UTR	ENST00000480887	ENST00000544452		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
intron-5UTR	ENST00000480887	ENST00000478035		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5UTR-3CDS	ENST00000530604	ENST00000285667		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5UTR-5UTR	ENST00000530604	ENST00000544452		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
5UTR-5UTR	ENST00000530604	ENST00000478035		TCGA	RV	BRCA	TCGA-AN-A03X-01A	RSF1	chr11	77531574	-	HSPA13	chr21	15753864	-
Frame-shit	ENST00000344691	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000344691	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000325074	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000325074	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
In-frame	ENST00000437180	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000437180	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000300305	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000300305	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000399240	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000399240	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000486278	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000486278	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000494829	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
intron-intron	ENST00000494829	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000358356	ENST00000377452		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000358356	ENST00000494921		TCGA	RV	BRCA	TCGA-C8-A8HR-01A	RUNX1	chr21	36252854	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000534307	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2DO-01A	SF3B2	chr11	65820575	+	SART1	chr11	65734730	+
intron-intron	ENST00000534307	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2DO-01A	SF3B2	chr11	65820575	+	SART1	chr11	65734730	+
In-frame	ENST00000528302	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2DO-01A	SF3B2	chr11	65820575	+	SART1	chr11	65734730	+
5CDS-intron	ENST00000528302	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2DO-01A	SF3B2	chr11	65820575	+	SART1	chr11	65734730	+
In-frame	ENST00000322535	ENST00000312397		TCGA	RV	BRCA	TCGA-GM-A2DO-01A	SF3B2	chr11	65820575	+	SART1	chr11	65734730	+
5CDS-intron	ENST00000322535	ENST00000528573		TCGA	RV	BRCA	TCGA-GM-A2DO-01A	SF3B2	chr11	65820575	+	SART1	chr11	65734730	+
5UTR-3CDS	ENST00000358161	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000358161	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000358161	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000358161	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-intron	ENST00000358161	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372739	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372739	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372739	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372739	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-intron	ENST00000372739	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372731	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372731	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372731	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000372731	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
5UTR-intron	ENST00000372731	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
intron-3CDS	ENST00000475367	ENST00000313070		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
intron-3CDS	ENST00000475367	ENST00000334010		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
intron-3CDS	ENST00000475367	ENST00000412584		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
intron-3CDS	ENST00000475367	ENST00000449022		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
intron-intron	ENST00000475367	ENST00000476131		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	SPTAN1	chr9	131314975	+	CADPS2	chr7	122377122	-
Frame-shit	ENST00000278742	ENST00000281437		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ST14	chr11	130029955	+	BARX2	chr11	129306646	+
5CDS-5UTR	ENST00000278742	ENST00000526127		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ST14	chr11	130029955	+	BARX2	chr11	129306646	+
5CDS-intron	ENST00000278742	ENST00000531946		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	ST14	chr11	130029955	+	BARX2	chr11	129306646	+
In-frame	ENST00000355327	ENST00000544974		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
In-frame	ENST00000355327	ENST00000560369		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
In-frame	ENST00000355327	ENST00000260382		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-5UTR	ENST00000355327	ENST00000443425		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-intron	ENST00000355327	ENST00000560691		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-intron	ENST00000355327	ENST00000436542		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-intron	ENST00000355327	ENST00000560158		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
In-frame	ENST00000261862	ENST00000544974		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
In-frame	ENST00000261862	ENST00000560369		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
In-frame	ENST00000261862	ENST00000260382		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-5UTR	ENST00000261862	ENST00000443425		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-intron	ENST00000261862	ENST00000560691		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-intron	ENST00000261862	ENST00000436542		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
5CDS-intron	ENST00000261862	ENST00000560158		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-3CDS	ENST00000357769	ENST00000544974		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-3CDS	ENST00000357769	ENST00000560369		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-3CDS	ENST00000357769	ENST00000260382		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-5UTR	ENST00000357769	ENST00000443425		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-intron	ENST00000357769	ENST00000560691		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-intron	ENST00000357769	ENST00000436542		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-intron	ENST00000357769	ENST00000560158		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-3CDS	ENST00000567838	ENST00000544974		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-3CDS	ENST00000567838	ENST00000560369		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-3CDS	ENST00000567838	ENST00000260382		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-5UTR	ENST00000567838	ENST00000443425		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-intron	ENST00000567838	ENST00000560691		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-intron	ENST00000567838	ENST00000436542		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
intron-intron	ENST00000567838	ENST00000560158		TCGA	RV	BRCA	TCGA-C8-A26Z-01A	THSD4	chr15	71704162	+	LRRC49	chr15	71185923	+
In-frame	ENST00000359396	ENST00000355265		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TRPV6	chr7	142583134	-	KEL	chr7	142640970	-
5CDS-intron	ENST00000359396	ENST00000479768		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	TRPV6	chr7	142583134	-	KEL	chr7	142640970	-
intron-3CDS	ENST00000523096	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000523096	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000523096	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000523096	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000523096	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000220669	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000220669	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000220669	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000220669	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000220669	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000522520	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000522520	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000522520	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000522520	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000522520	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519338	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519338	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519338	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519338	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519338	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521895	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521895	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521895	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521895	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521895	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521287	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521287	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521287	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521287	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000521287	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000517588	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000517588	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000517588	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000517588	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000517588	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519523	ENST00000522695		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519523	ENST00000524300		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519523	ENST00000523558		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-3CDS	ENST00000519523	ENST00000521210		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000355780		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000519961		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000521727		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000521451		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000522509		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000517542		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000524104		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000522962		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
intron-intron	ENST00000519523	ENST00000521419		TCGA	RV	BRCA	TCGA-UU-A93S-01A	ZFAND1	chr8	82644434	-	STAU2	chr8	74334937	-
5UTR-3CDS	ENST00000291572	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000291572	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000291572	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000291572	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3UTR	ENST00000291572	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-intron	ENST00000291572	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-intron	ENST00000291572	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000398061	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000398061	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000398061	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000398061	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3UTR	ENST00000398061	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-intron	ENST00000398061	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-intron	ENST00000398061	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000327505	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000327505	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000327505	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000327505	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3UTR	ENST00000327505	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-intron	ENST00000327505	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-intron	ENST00000327505	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398063	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398063	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398063	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398063	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3UTR	ENST00000398063	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000398063	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000398063	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398058	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398058	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398058	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000398058	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3UTR	ENST00000398058	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000398058	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000398058	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000546158	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000546158	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000546158	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000546158	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3UTR	ENST00000546158	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000546158	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000546158	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000479117	ENST00000509603		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000479117	ENST00000319524		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000479117	ENST00000268763		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3CDS	ENST00000479117	ENST00000398988		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-3UTR	ENST00000479117	ENST00000581975		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000479117	ENST00000582410		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
intron-intron	ENST00000479117	ENST00000578981		TCGA	RV	BRCA	TCGA-A8-A09Q-01A	AGPAT3	chr21	45323900	+	KSR1	chr17	25915501	+
5UTR-3CDS	ENST00000356401	ENST00000430379		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000356401	ENST00000319017		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
5UTR-5UTR	ENST00000356401	ENST00000544097		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000449376	ENST00000430379		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000449376	ENST00000319017		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
5UTR-5UTR	ENST00000449376	ENST00000544097		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
3UTR-3CDS	ENST00000490095	ENST00000430379		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
3UTR-3CDS	ENST00000490095	ENST00000319017		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
3UTR-5UTR	ENST00000490095	ENST00000544097		TCGA	RV	BRCA	TCGA-AC-A23C-01A	ARIH2	chr3	48956431	+	SLC25A20	chr3	48929505	-
5CDS-intron	ENST00000303329	ENST00000450793		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000538141		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000380180		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000318007		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000437932		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000317968		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000542407		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000508216		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000514743		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-3UTR	ENST00000303329	ENST00000380176		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000359265		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000512274		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
5CDS-intron	ENST00000303329	ENST00000504489		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000450793		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000538141		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000380180		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000318007		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000437932		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000317968		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000542407		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000508216		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000514743		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-3UTR	ENST00000533983	ENST00000380176		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000359265		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000512274		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000533983	ENST00000504489		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000450793		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000538141		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000380180		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000318007		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000437932		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000317968		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000542407		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000508216		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000514743		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-3UTR	ENST00000527771	ENST00000380176		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000359265		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000512274		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000527771	ENST00000504489		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000450793		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000538141		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000380180		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000318007		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000437932		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000317968		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000542407		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000508216		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000514743		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-3UTR	ENST00000531595	ENST00000380176		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000359265		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000512274		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
intron-intron	ENST00000531595	ENST00000504489		TCGA	RV	BRCA	TCGA-EW-A1J2-01A	ARNT2	chr15	80696888	+	PDLIM5	chr4	95539155	+
In-frame	ENST00000389153	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000389153	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000389153	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000389153	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000389153	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000608853	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000608853	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000608853	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000608853	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000377617	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000377617	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000377617	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000377617	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000550104	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000550104	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000550104	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000550104	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
Frame-shit	ENST00000542287	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000542287	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000542287	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000542287	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000535949	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000535949	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000535949	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
5CDS-intron	ENST00000535949	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000355312		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000356259		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000338373		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000360185		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000343646		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000354574		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000457474		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000361006		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000553118		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-3CDS	ENST00000549455	ENST00000551209		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-intron	ENST00000549455	ENST00000548655		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-intron	ENST00000549455	ENST00000547815		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
intron-intron	ENST00000549455	ENST00000320063		TCGA	RV	BRCA	TCGA-C8-A132-01A	ATXN2	chr12	111990084	-	GIT2	chr12	110405308	-
In-frame	ENST00000313070	ENST00000458573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
5CDS-intron	ENST00000313070	ENST00000456238		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
In-frame	ENST00000334010	ENST00000458573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
5CDS-intron	ENST00000334010	ENST00000456238		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
In-frame	ENST00000412584	ENST00000458573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
5CDS-intron	ENST00000412584	ENST00000456238		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
In-frame	ENST00000449022	ENST00000458573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
5CDS-intron	ENST00000449022	ENST00000456238		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
intron-3CDS	ENST00000476131	ENST00000458573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
intron-intron	ENST00000476131	ENST00000456238		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	CADPS2	chr7	122526053	-	LMOD2	chr7	123301914	+
Frame-shit	ENST00000544484	ENST00000257600		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
5CDS-intron	ENST00000544484	ENST00000547974		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
Frame-shit	ENST00000357008	ENST00000257600		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
5CDS-intron	ENST00000357008	ENST00000547974		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
Frame-shit	ENST00000309577	ENST00000257600		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
5CDS-intron	ENST00000309577	ENST00000547974		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
Frame-shit	ENST00000544040	ENST00000257600		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
5CDS-intron	ENST00000544040	ENST00000547974		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
intron-3CDS	ENST00000540960	ENST00000257600		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
intron-intron	ENST00000540960	ENST00000547974		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	CHD4	chr12	6690210	-	DTX1	chr12	113515229	+
intron-3CDS	ENST00000392975	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000392975	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000392975	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000392975	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000360793	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000360793	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000360793	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000360793	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-3CDS	ENST00000584031	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000584031	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000584031	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000584031	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-3CDS	ENST00000392976	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000392976	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000392976	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000392976	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000582297	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000582297	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000582297	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000582297	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-3CDS	ENST00000581573	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000581573	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000581573	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000581573	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000448884	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000448884	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000448884	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000448884	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000582034	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000582034	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000582034	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000582034	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-3CDS	ENST00000542042	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000542042	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000542042	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000542042	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-3CDS	ENST00000581163	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000581163	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000581163	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000581163	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-3CDS	ENST00000582997	ENST00000300896		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000582997	ENST00000592339		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000582997	ENST00000393003		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
intron-intron	ENST00000582997	ENST00000586881		TCGA	RV	BRCA	TCGA-AO-A0J5-01A	CYB561	chr17	61523606	-	USP32	chr17	58422969	-
Frame-shit	ENST00000583610	ENST00000580974		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000583610	ENST00000299954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000583610	ENST00000335257		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000583610	ENST00000581322		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000394294	ENST00000580974		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000394294	ENST00000299954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000394294	ENST00000335257		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000394294	ENST00000581322		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000264658	ENST00000580974		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000264658	ENST00000299954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000264658	ENST00000335257		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
Frame-shit	ENST00000264658	ENST00000581322		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000577399	ENST00000580974		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000577399	ENST00000299954		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000577399	ENST00000335257		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000577399	ENST00000581322		TCGA	RV	BRCA	TCGA-3C-AALI-01A	FBXL20	chr17	37557614	-	PITPNC1	chr17	65688688	+
intron-3CDS	ENST00000377791	ENST00000377905		TCGA	RV	BRCA	TCGA-A8-A09N-01A	HIST1H2AC	chr6	26124977	+	SLC17A4	chr6	25778154	+
intron-3CDS	ENST00000377791	ENST00000439485		TCGA	RV	BRCA	TCGA-A8-A09N-01A	HIST1H2AC	chr6	26124977	+	SLC17A4	chr6	25778154	+
intron-3UTR	ENST00000377791	ENST00000397076		TCGA	RV	BRCA	TCGA-A8-A09N-01A	HIST1H2AC	chr6	26124977	+	SLC17A4	chr6	25778154	+
intron-3CDS	ENST00000602637	ENST00000377905		TCGA	RV	BRCA	TCGA-A8-A09N-01A	HIST1H2AC	chr6	26124977	+	SLC17A4	chr6	25778154	+
intron-3CDS	ENST00000602637	ENST00000439485		TCGA	RV	BRCA	TCGA-A8-A09N-01A	HIST1H2AC	chr6	26124977	+	SLC17A4	chr6	25778154	+
intron-3UTR	ENST00000602637	ENST00000397076		TCGA	RV	BRCA	TCGA-A8-A09N-01A	HIST1H2AC	chr6	26124977	+	SLC17A4	chr6	25778154	+
In-frame	ENST00000254770	ENST00000499676		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000489671		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000486111		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000477292		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000495310		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000467072		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000317104		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000310282		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000479040		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
In-frame	ENST00000254770	ENST00000397991		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
5CDS-intron	ENST00000254770	ENST00000464782		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000499676		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000489671		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000486111		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000477292		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000495310		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000467072		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000317104		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000310282		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000479040		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000486376	ENST00000397991		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
intron-intron	ENST00000486376	ENST00000464782		TCGA	RV	BRCA	TCGA-A2-A25F-01A	LANCL2	chr7	55469013	+	TFDP2	chr3	141682805	-
5CDS-intron	ENST00000379141	ENST00000422156		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-3UTR	ENST00000379141	ENST00000540759		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-intron	ENST00000379141	ENST00000550465		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-3UTR	ENST00000379141	ENST00000354947		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-intron	ENST00000320743	ENST00000422156		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-3UTR	ENST00000320743	ENST00000540759		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-intron	ENST00000320743	ENST00000550465		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
5CDS-3UTR	ENST00000320743	ENST00000354947		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57995709	+
Frame-shit	ENST00000313608	ENST00000577830		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000313608	ENST00000407144		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000313608	ENST00000360238		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000313608	ENST00000577840		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
5CDS-5UTR	ENST00000313608	ENST00000578357		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000578444	ENST00000577830		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000578444	ENST00000407144		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000578444	ENST00000360238		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000578444	ENST00000577840		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
5CDS-5UTR	ENST00000578444	ENST00000578357		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	MRPS23	chr17	55927328	-	CUEDC1	chr17	55945604	-
Frame-shit	ENST00000416426	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000416426	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000416426	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
5CDS-intron	ENST00000416426	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000284073	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000284073	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000284073	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
5CDS-intron	ENST00000284073	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000322684	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000322684	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000322684	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
5CDS-intron	ENST00000322684	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000442934	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000442934	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000442934	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
5CDS-intron	ENST00000442934	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000579180	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000579180	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
Frame-shit	ENST00000579180	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
5CDS-intron	ENST00000579180	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
3UTR-3CDS	ENST00000579505	ENST00000258991		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
3UTR-3CDS	ENST00000579505	ENST00000583097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
3UTR-3CDS	ENST00000579505	ENST00000584379		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
3UTR-intron	ENST00000579505	ENST00000581812		TCGA	RV	BRCA	TCGA-D8-A27N-01A	MSI2	chr17	55607085	+	TEX2	chr17	62272455	-
5CDS-5UTR	ENST00000341744	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000341744	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000341744	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000395816	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000395816	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-intron	ENST00000395816	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000347215	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000347215	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-intron	ENST00000347215	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000265626	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000265626	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-intron	ENST00000265626	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000395814	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000395814	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-intron	ENST00000395814	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000472841	ENST00000375114		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000472841	ENST00000246194		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
intron-intron	ENST00000472841	ENST00000493399		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56284530	-	RALY	chr20	32619328	+
Frame-shit	ENST00000253925	ENST00000294304		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70222706	+	LRP5	chr11	68178904	+
5CDS-intron	ENST00000253925	ENST00000529481		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70222706	+	LRP5	chr11	68178904	+
Frame-shit	ENST00000389547	ENST00000294304		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70222706	+	LRP5	chr11	68178904	+
5CDS-intron	ENST00000389547	ENST00000529481		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70222706	+	LRP5	chr11	68178904	+
3UTR-3CDS	ENST00000530548	ENST00000294304		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70222706	+	LRP5	chr11	68178904	+
3UTR-intron	ENST00000530548	ENST00000529481		TCGA	RV	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70222706	+	LRP5	chr11	68178904	+
5CDS-5UTR	ENST00000261207	ENST00000549405		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000261207	ENST00000393205		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261207	ENST00000332156		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261207	ENST00000604798		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261207	ENST00000552808		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261207	ENST00000548651		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261207	ENST00000552435		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261207	ENST00000602941		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000549405		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000450142	ENST00000393205		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000332156		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000604798		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000552808		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000548651		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000552435		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000450142	ENST00000602941		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000549405		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000437004	ENST00000393205		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000332156		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000604798		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000552808		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000548651		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000552435		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000437004	ENST00000602941		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000549405		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000546369	ENST00000393205		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000332156		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000604798		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000552808		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000548651		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000552435		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000546369	ENST00000602941		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000549405		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000550107	ENST00000393205		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000332156		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000604798		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000552808		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000548651		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000552435		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000550107	ENST00000602941		TCGA	RV	BRCA	TCGA-A1-A0SE-01A	PPP1R12A	chr12	80239082	-	MGAT4C	chr12	86443501	-
In-frame	ENST00000308488	ENST00000347580		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
In-frame	ENST00000308488	ENST00000379853		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
In-frame	ENST00000308488	ENST00000265708		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
In-frame	ENST00000308488	ENST00000521880		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
5CDS-intron	ENST00000308488	ENST00000523181		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000360355	ENST00000347580		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000360355	ENST00000379853		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000360355	ENST00000265708		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000360355	ENST00000521880		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-intron	ENST00000360355	ENST00000523181		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000480887	ENST00000347580		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000480887	ENST00000379853		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000480887	ENST00000265708		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000480887	ENST00000521880		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-intron	ENST00000480887	ENST00000523181		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000530604	ENST00000347580		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000530604	ENST00000379853		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000530604	ENST00000265708		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000530604	ENST00000521880		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
intron-intron	ENST00000530604	ENST00000523181		TCGA	RV	BRCA	TCGA-XX-A899-01A	RSF1	chr11	77458081	-	ADAM2	chr8	39607263	-
In-frame	ENST00000296084	ENST00000273375		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000296084	ENST00000491398		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000296084	ENST00000483733		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
In-frame	ENST00000427044	ENST00000273375		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000427044	ENST00000491398		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000427044	ENST00000483733		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
intron-3CDS	ENST00000484106	ENST00000273375		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
intron-5UTR	ENST00000484106	ENST00000491398		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
intron-5UTR	ENST00000484106	ENST00000483733		TCGA	RV	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133921574	-	RABL3	chr3	120417420	-
In-frame	ENST00000565488	ENST00000444610		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
5CDS-5UTR	ENST00000565488	ENST00000218981		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
5CDS-5UTR	ENST00000565488	ENST00000280056		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
5CDS-5UTR	ENST00000565488	ENST00000490949		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
In-frame	ENST00000370041	ENST00000444610		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
5CDS-5UTR	ENST00000370041	ENST00000218981		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
5CDS-5UTR	ENST00000370041	ENST00000280056		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
5CDS-5UTR	ENST00000370041	ENST00000490949		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
intron-3CDS	ENST00000569674	ENST00000444610		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
intron-5UTR	ENST00000569674	ENST00000218981		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
intron-5UTR	ENST00000569674	ENST00000280056		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
intron-5UTR	ENST00000569674	ENST00000490949		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	SLC25A24	chr1	108724563	-	DHRS12	chr13	52373803	-
In-frame	ENST00000392185	ENST00000230895		TCGA	RV	BRCA	TCGA-A8-A09X-01A	SNX9	chr6	158323077	+	DAP	chr5	10683683	-
5CDS-intron	ENST00000392185	ENST00000432074		TCGA	RV	BRCA	TCGA-A8-A09X-01A	SNX9	chr6	158323077	+	DAP	chr5	10683683	-
5CDS-intron	ENST00000392185	ENST00000510546		TCGA	RV	BRCA	TCGA-A8-A09X-01A	SNX9	chr6	158323077	+	DAP	chr5	10683683	-
In-frame	ENST00000520408	ENST00000262097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
In-frame	ENST00000520408	ENST00000381733		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000520408	ENST00000417108		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000520408	ENST00000520781		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000520408	ENST00000314146		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000520408	ENST00000520051		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
In-frame	ENST00000310430	ENST00000262097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
In-frame	ENST00000310430	ENST00000381733		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000310430	ENST00000417108		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000310430	ENST00000520781		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000310430	ENST00000314146		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000310430	ENST00000520051		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
In-frame	ENST00000518281	ENST00000262097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
In-frame	ENST00000518281	ENST00000381733		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000518281	ENST00000417108		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000518281	ENST00000520781		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000518281	ENST00000314146		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
5CDS-intron	ENST00000518281	ENST00000520051		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-3CDS	ENST00000522110	ENST00000262097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-3CDS	ENST00000522110	ENST00000381733		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-intron	ENST00000522110	ENST00000417108		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-intron	ENST00000522110	ENST00000520781		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-intron	ENST00000522110	ENST00000314146		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-intron	ENST00000522110	ENST00000520051		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
3UTR-3CDS	ENST00000518027	ENST00000262097		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
3UTR-3CDS	ENST00000518027	ENST00000381733		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
3UTR-intron	ENST00000518027	ENST00000417108		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
3UTR-intron	ENST00000518027	ENST00000520781		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
3UTR-intron	ENST00000518027	ENST00000314146		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
3UTR-intron	ENST00000518027	ENST00000520051		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TNKS	chr8	9473187	+	ASAH1	chr8	17922040	-
intron-intron	ENST00000379056	ENST00000371917		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000379056	ENST00000493140		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000529421	ENST00000371917		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000529421	ENST00000493140		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000530705	ENST00000371917		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000530705	ENST00000493140		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000379060	ENST00000371917		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000379060	ENST00000493140		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000379055	ENST00000371917		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000379055	ENST00000493140		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000309246	ENST00000371917		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000309246	ENST00000493140		TCGA	RV	BRCA	TCGA-A7-A3IY-01A	TPT1	chr13	45911313	-	ARFGEF2	chr20	47615777	+
5UTR-3CDS	ENST00000317025	ENST00000425967		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000397091		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000447712		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000341462		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000532791		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000397113		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000356207		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000335922		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000326324		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000317025	ENST00000397103		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000397108		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000317025	ENST00000496629		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000433384	ENST00000425967		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000397091		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000447712		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000341462		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000532791		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000397113		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000356207		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000335922		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000326324		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000433384	ENST00000397103		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000397108		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000433384	ENST00000496629		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000527502	ENST00000425967		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000397091		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000447712		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000341462		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000532791		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000397113		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000356207		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000335922		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000326324		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000527502	ENST00000397103		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000397108		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000527502	ENST00000496629		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000316985	ENST00000425967		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000397091		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000447712		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000341462		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000532791		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000397113		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000356207		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000335922		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000326324		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000316985	ENST00000397103		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000397108		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000316985	ENST00000496629		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-3CDS	ENST00000525081	ENST00000425967		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000397091		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000447712		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000341462		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000532791		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000397113		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000356207		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000335922		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000326324		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-intron	ENST00000525081	ENST00000397103		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000397108		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-intron	ENST00000525081	ENST00000496629		TCGA	RV	BRCA	TCGA-E2-A15A-06A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
In-frame	ENST00000326799	ENST00000253270		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000326799	ENST00000375259		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000326799	ENST00000375257		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
5CDS-5UTR	ENST00000326799	ENST00000482643		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000376016	ENST00000253270		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000376016	ENST00000375259		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000376016	ENST00000375257		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
5CDS-5UTR	ENST00000376016	ENST00000482643		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000375972	ENST00000253270		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000375972	ENST00000375259		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000375972	ENST00000375257		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
5CDS-5UTR	ENST00000375972	ENST00000482643		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
intron-3CDS	ENST00000463270	ENST00000253270		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
intron-3CDS	ENST00000463270	ENST00000375259		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
intron-3CDS	ENST00000463270	ENST00000375257		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
intron-5UTR	ENST00000463270	ENST00000482643		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000477432	ENST00000253270		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000477432	ENST00000375259		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
In-frame	ENST00000477432	ENST00000375257		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
5CDS-5UTR	ENST00000477432	ENST00000482643		TCGA	RV	BRCA	TCGA-E2-A1IH-01A	YME1L1	chr10	27437835	-	SLC35D2	chr9	99122503	-
5UTR-3CDS	ENST00000456783	ENST00000390649		TCGA	RV	BRCA	TCGA-BH-A18K-01A	ZNF492	chr19	22817276	+	NLRP5	chr19	56549391	+
intron-5UTR	ENST00000539909	ENST00000394132		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000394136		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000558613		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000262074		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000558663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000394135		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000394130		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000539909	ENST00000394129		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-intron	ENST00000539909	ENST00000490671		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000394132		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000394136		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000558613		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000262074		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000558663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000394135		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000394130		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000286621	ENST00000394129		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-intron	ENST00000286621	ENST00000490671		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000394132		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000394136		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000558613		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000262074		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000558663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000394135		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000394130		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000372734	ENST00000394129		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-intron	ENST00000372734	ENST00000490671		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000394132		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000394136		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000558613		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000262074		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000558663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000394135		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000394130		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-5UTR	ENST00000541550	ENST00000394129		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
5CDS-intron	ENST00000541550	ENST00000490671		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000394132		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000394136		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000558613		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000262074		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000558663		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000394135		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000394130		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-5UTR	ENST00000467840	ENST00000394129		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
intron-intron	ENST00000467840	ENST00000490671		TCGA	RV	BRCA	TCGA-AO-A03P-01A	ADK	chr10	75936644	+	TTC23	chr15	99768937	-
In-frame	ENST00000534312	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
In-frame	ENST00000534312	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
In-frame	ENST00000534312	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
5CDS-intron	ENST00000534312	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
5CDS-intron	ENST00000534312	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
5CDS-intron	ENST00000534312	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
5CDS-intron	ENST00000534312	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
5CDS-5UTR	ENST00000534312	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000395850	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000395850	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000395850	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000395850	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000395850	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000395850	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000395850	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000395850	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000533403	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000533403	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000533403	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000533403	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000533403	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000533403	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000533403	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000533403	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000351554	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000351554	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000351554	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000351554	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000351554	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000351554	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000351554	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000351554	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000415002	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000415002	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000415002	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000415002	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000415002	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000415002	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000415002	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000415002	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000445143	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000445143	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000445143	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000445143	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000445143	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000445143	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000445143	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000445143	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000426650	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000426650	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000426650	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000426650	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000426650	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000426650	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000426650	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000426650	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000437761	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000437761	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000437761	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000437761	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000437761	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000437761	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000437761	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000437761	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000527577	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000527577	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000527577	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000527577	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000527577	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000527577	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000527577	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000527577	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000528700	ENST00000526785		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000528700	ENST00000265651		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-3CDS	ENST00000528700	ENST00000530401		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000528700	ENST00000531080		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000528700	ENST00000532057		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000528700	ENST00000534136		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-intron	ENST00000528700	ENST00000448981		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
intron-5UTR	ENST00000528700	ENST00000533103		TCGA	RV	BRCA	TCGA-A7-A13D-01B	CD59	chr11	33731752	-	FBXO3	chr11	33780147	-
In-frame	ENST00000264613	ENST00000546136		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000381381		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000309359		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000451604		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000537393		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000541536		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000396007		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000545921		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000541847		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000441133		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000536850		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000546136		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000381381		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000309359		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000451604		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000537393		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000541536		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000396007		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000545921		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000541847		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000441133		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000536850		TCGA	RV	BRCA	TCGA-BH-A18V-06A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000540367	ENST00000371571		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000540367	ENST00000506387		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-5UTR	ENST00000540367	ENST00000396017		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000376618	ENST00000371571		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000376618	ENST00000506387		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-5UTR	ENST00000376618	ENST00000396017		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000265641	ENST00000371571		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000265641	ENST00000506387		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-5UTR	ENST00000265641	ENST00000396017		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000539743	ENST00000371571		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-intron	ENST00000539743	ENST00000506387		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-5UTR	ENST00000539743	ENST00000396017		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000537756	ENST00000371571		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000537756	ENST00000506387		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
intron-5UTR	ENST00000537756	ENST00000396017		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000538994	ENST00000371571		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000538994	ENST00000506387		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
intron-5UTR	ENST00000538994	ENST00000396017		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	CPT1A	chr11	68548108	-	KCNG1	chr20	49628953	-
5CDS-3UTR	ENST00000405015	ENST00000472729		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405015	ENST00000311832		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000405015	ENST00000538736		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000431489	ENST00000472729		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000431489	ENST00000311832		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000431489	ENST00000538736		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000354487	ENST00000472729		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000354487	ENST00000311832		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000354487	ENST00000538736		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000263991	ENST00000472729		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000263991	ENST00000311832		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000263991	ENST00000538736		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405289	ENST00000472729		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405289	ENST00000311832		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000405289	ENST00000538736		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
intron-3UTR	ENST00000496857	ENST00000472729		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
intron-3UTR	ENST00000496857	ENST00000311832		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
intron-intron	ENST00000496857	ENST00000538736		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	EHBP1	chr2	62998527	+	COMMD1	chr2	62362966	+
intron-intron	ENST00000370918	ENST00000354817		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000370918	ENST00000527202		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000370918	ENST00000532502		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000304434	ENST00000354817		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000304434	ENST00000527202		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000304434	ENST00000532502		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000542638	ENST00000354817		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000542638	ENST00000527202		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000542638	ENST00000532502		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000541407	ENST00000354817		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000541407	ENST00000527202		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000541407	ENST00000532502		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000486973	ENST00000354817		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000486973	ENST00000527202		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000486973	ENST00000532502		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000370913	ENST00000354817		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000370913	ENST00000527202		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
intron-intron	ENST00000370913	ENST00000532502		TCGA	RV	BRCA	TCGA-AR-A2LE-01A	ELOVL5	chr6	53132203	-	FAR1	chr11	13744912	+
5CDS-3UTR	ENST00000358232	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000358232	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000358232	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000358232	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000351393	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000351393	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000351393	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000351393	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000442325	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000442325	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000442325	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000442325	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000423854	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000423854	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000423854	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000423854	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000350494	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000350494	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000350494	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000350494	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000542824	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000542824	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000542824	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000542824	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000542050	ENST00000586725		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000542050	ENST00000269195		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000542050	ENST00000591081		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000542050	ENST00000537549		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	ELP2	chr18	33713279	+	GALNT1	chr18	33234524	+
In-frame	ENST00000369061	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000357555	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000358487	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000356226	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000369060	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000369059	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
In-frame	ENST00000346997	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000457416	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000351936	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000360144	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
In-frame	ENST00000369056	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
intron-3CDS	ENST00000490349	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
intron-3CDS	ENST00000359354	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000478859	ENST00000263102		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	FGFR2	chr10	123243212	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000520810	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
Frame-shit	ENST00000416505	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
Frame-shit	ENST00000519735	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
Frame-shit	ENST00000520835	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000379708	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000518983	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000522147	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000522785	ENST00000301838		TCGA	RV	BRCA	TCGA-AR-A2LK-01A	IKBKB	chr8	42166543	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000261681	ENST00000315266		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3CDS	ENST00000261681	ENST00000478722		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000261681	ENST00000459628		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000261681	ENST00000543237		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000261681	ENST00000305960		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3CDS	ENST00000555925	ENST00000315266		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3CDS	ENST00000555925	ENST00000478722		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000555925	ENST00000459628		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000555925	ENST00000543237		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000555925	ENST00000305960		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
3UTR-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
3UTR-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
3UTR-intron	ENST00000554911	ENST00000459628		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
3UTR-intron	ENST00000554911	ENST00000543237		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
3UTR-intron	ENST00000554911	ENST00000305960		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
3UTR-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000556345	ENST00000459628		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000556345	ENST00000543237		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-intron	ENST00000556345	ENST00000305960		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	BRCA	TCGA-A2-A0YM-01A	MPP5	chr14	67708250	+	GPHN	chr14	67610079	+
5UTR-5UTR	ENST00000261182	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000261182	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000393263	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000393263	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000431879	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000431879	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000547773	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000547773	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000544816	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000544816	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000542344	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000542344	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000535020	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000535020	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000549596	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000549596	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
intron-5UTR	ENST00000547993	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
intron-intron	ENST00000547993	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000552342	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000552342	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000548044	ENST00000389032		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
5UTR-intron	ENST00000548044	ENST00000539577		TCGA	RV	BRCA	TCGA-BH-A1FN-01A	NAP1L1	chr12	76478347	-	STK38L	chr12	27450643	+
Frame-shit	ENST00000257829	ENST00000341394		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000257829	ENST00000389645		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000257829	ENST00000532820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000257829	ENST00000530820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000257829	ENST00000529307		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
5CDS-3UTR	ENST00000257829	ENST00000533657		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000531159	ENST00000341394		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000531159	ENST00000389645		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000531159	ENST00000532820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000531159	ENST00000530820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000531159	ENST00000529307		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3UTR	ENST00000531159	ENST00000533657		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000527971	ENST00000341394		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000527971	ENST00000389645		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000527971	ENST00000532820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000527971	ENST00000530820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
Frame-shit	ENST00000527971	ENST00000529307		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
5CDS-3UTR	ENST00000527971	ENST00000533657		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000341394		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000389645		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000532820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000530820		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000529307		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
intron-3UTR	ENST00000532555	ENST00000533657		TCGA	RV	BRCA	TCGA-AN-A0XU-01A	NAT10	chr11	34130380	+	CAPRIN1	chr11	34118026	+
5CDS-5UTR	ENST00000262077	ENST00000410107		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000262077	ENST00000397423		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000262077	ENST00000495262		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000262077	ENST00000379597		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000262077	ENST00000316170		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000262077	ENST00000265012		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-5UTR	ENST00000537253	ENST00000410107		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000537253	ENST00000397423		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000537253	ENST00000495262		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000537253	ENST00000379597		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000537253	ENST00000316170		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000537253	ENST00000265012		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10493053	+
Frame-shit	ENST00000359568	ENST00000264079		TCGA	RV	BRCA	TCGA-B6-A402-01A	PCNT	chr21	47811291	+	MCOLN1	chr19	7598409	+
3UTR-3CDS	ENST00000480896	ENST00000264079		TCGA	RV	BRCA	TCGA-B6-A402-01A	PCNT	chr21	47811291	+	MCOLN1	chr19	7598409	+
intron-3CDS	ENST00000368874	ENST00000368868		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368874	ENST00000447402		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368874	ENST00000426705		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368874	ENST00000435071		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368874	ENST00000473693		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000368868		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000447402		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000426705		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000271657	ENST00000435071		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000271657	ENST00000473693		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000368868		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000447402		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
In-frame	ENST00000368875	ENST00000426705		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368875	ENST00000435071		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368875	ENST00000473693		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368873	ENST00000368868		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368873	ENST00000447402		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368873	ENST00000426705		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368873	ENST00000435071		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368873	ENST00000473693		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000368868		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000447402		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000426705		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000529142	ENST00000435071		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000529142	ENST00000473693		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5UTR-3CDS	ENST00000368872	ENST00000368868		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5UTR-3CDS	ENST00000368872	ENST00000447402		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5UTR-3CDS	ENST00000368872	ENST00000426705		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5UTR-5UTR	ENST00000368872	ENST00000435071		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
5UTR-5UTR	ENST00000368872	ENST00000473693		TCGA	RV	BRCA	TCGA-A8-A07C-01A	PI4KB	chr1	151298648	-	SELENBP1	chr1	151342245	-
In-frame	ENST00000354300	ENST00000286190		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202173973	-
In-frame	ENST00000354300	ENST00000405148		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202173973	-
In-frame	ENST00000354300	ENST00000392257		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202173973	-
In-frame	ENST00000354300	ENST00000439709		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202173973	-
5CDS-5UTR	ENST00000354300	ENST00000448967		TCGA	RV	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202173973	-
Frame-shit	ENST00000244926	ENST00000268182		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	IQGAP1	chr15	91037945	+
Frame-shit	ENST00000244926	ENST00000560738		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	IQGAP1	chr15	91037945	+
5CDS-intron	ENST00000244926	ENST00000560020		TCGA	RV	BRCA	TCGA-E9-A3Q9-01A	SCGB1D2	chr11	62012280	+	IQGAP1	chr15	91037945	+
intron-3CDS	ENST00000361236	ENST00000260229		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TMEM123	chr11	102319543	-	MMP27	chr11	102563772	-
Frame-shit	ENST00000398136	ENST00000260229		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TMEM123	chr11	102319543	-	MMP27	chr11	102563772	-
5UTR-3CDS	ENST00000532161	ENST00000260229		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TMEM123	chr11	102319543	-	MMP27	chr11	102563772	-
5UTR-3CDS	ENST00000525577	ENST00000260229		TCGA	RV	BRCA	TCGA-A7-A13D-01B	TMEM123	chr11	102319543	-	MMP27	chr11	102563772	-
intron-3CDS	ENST00000429989	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
intron-3CDS	ENST00000481124	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
intron-3CDS	ENST00000372164	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
5UTR-3CDS	ENST00000372158	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
intron-3CDS	ENST00000341863	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
5UTR-3CDS	ENST00000372156	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
intron-3CDS	ENST00000265450	ENST00000372292		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TSPAN14	chr10	82228443	+	SFTPD	chr10	81702635	-
5UTR-3CDS	ENST00000340990	ENST00000367249		TCGA	RV	BRCA	TCGA-E9-A22E-01A	ADIPOR1	chr1	202927313	-	CYB5R1	chr1	202932855	-
5UTR-5UTR	ENST00000340990	ENST00000497655		TCGA	RV	BRCA	TCGA-E9-A22E-01A	ADIPOR1	chr1	202927313	-	CYB5R1	chr1	202932855	-
intron-3CDS	ENST00000436244	ENST00000367249		TCGA	RV	BRCA	TCGA-E9-A22E-01A	ADIPOR1	chr1	202927313	-	CYB5R1	chr1	202932855	-
intron-5UTR	ENST00000436244	ENST00000497655		TCGA	RV	BRCA	TCGA-E9-A22E-01A	ADIPOR1	chr1	202927313	-	CYB5R1	chr1	202932855	-
5UTR-3CDS	ENST00000367254	ENST00000367249		TCGA	RV	BRCA	TCGA-E9-A22E-01A	ADIPOR1	chr1	202927313	-	CYB5R1	chr1	202932855	-
5UTR-5UTR	ENST00000367254	ENST00000497655		TCGA	RV	BRCA	TCGA-E9-A22E-01A	ADIPOR1	chr1	202927313	-	CYB5R1	chr1	202932855	-
In-frame	ENST00000279873	ENST00000369252		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
In-frame	ENST00000279873	ENST00000533213		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
In-frame	ENST00000279873	ENST00000277895		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
In-frame	ENST00000279873	ENST00000369266		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
In-frame	ENST00000279873	ENST00000392952		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
In-frame	ENST00000279873	ENST00000369253		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
5CDS-intron	ENST00000279873	ENST00000477638		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000309334	ENST00000369252		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000309334	ENST00000533213		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000309334	ENST00000277895		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000309334	ENST00000369266		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000309334	ENST00000392952		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000309334	ENST00000369253		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-intron	ENST00000309334	ENST00000477638		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ARID5B	chr10	63700167	+	ABLIM1	chr10	116201545	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A13D-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000256343	ENST00000267622		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	CATSPERB	chr14	92126181	-	TRIP11	chr14	92439205	-
5CDS-intron	ENST00000256343	ENST00000555105		TCGA	RV	BRCA	TCGA-BH-A0EE-01A	CATSPERB	chr14	92126181	-	TRIP11	chr14	92439205	-
intron-3CDS	ENST00000462274	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
intron-3UTR	ENST00000462274	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
Frame-shit	ENST00000338785	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000338785	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
Frame-shit	ENST00000451934	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000451934	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
Frame-shit	ENST00000321219	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000321219	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
Frame-shit	ENST00000339659	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000339659	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
Frame-shit	ENST00000398960	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000398960	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
Frame-shit	ENST00000398956	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000398956	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
intron-3CDS	ENST00000455387	ENST00000399312		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
intron-3UTR	ENST00000455387	ENST00000482679		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	DYRK1A	chr21	38858916	+	MRPS6	chr21	35497641	+
5UTR-3CDS	ENST00000299293	ENST00000393249		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000299293	ENST00000261183		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000299293	ENST00000393250		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-intron	ENST00000299293	ENST00000552178		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000549921	ENST00000393249		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000549921	ENST00000261183		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000549921	ENST00000393250		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-intron	ENST00000549921	ENST00000552178		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
intron-3CDS	ENST00000550389	ENST00000393249		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
intron-3CDS	ENST00000550389	ENST00000261183		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
intron-3CDS	ENST00000550389	ENST00000393250		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
intron-intron	ENST00000550389	ENST00000552178		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000397997	ENST00000393249		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000397997	ENST00000261183		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-3CDS	ENST00000397997	ENST00000393250		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
5UTR-intron	ENST00000397997	ENST00000552178		TCGA	RV	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69924740	+	OSBPL8	chr12	76750508	-
In-frame	ENST00000264235	ENST00000295633		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000264235	ENST00000424703		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000264235	ENST00000485968		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
In-frame	ENST00000316626	ENST00000295633		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000316626	ENST00000424703		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000316626	ENST00000485968		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
intron-3CDS	ENST00000473886	ENST00000295633		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
intron-intron	ENST00000473886	ENST00000424703		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
intron-intron	ENST00000473886	ENST00000485968		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GSK3B	chr3	119720893	-	FSTL1	chr3	120134874	-
Frame-shit	ENST00000528838	ENST00000504830		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
Frame-shit	ENST00000528838	ENST00000352040		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
5CDS-5UTR	ENST00000528838	ENST00000504582		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
5CDS-intron	ENST00000528838	ENST00000515401		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-3CDS	ENST00000400780	ENST00000504830		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-3CDS	ENST00000400780	ENST00000352040		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-5UTR	ENST00000400780	ENST00000504582		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-intron	ENST00000400780	ENST00000515401		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-3CDS	ENST00000528842	ENST00000504830		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-3CDS	ENST00000528842	ENST00000352040		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-5UTR	ENST00000528842	ENST00000504582		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
intron-intron	ENST00000528842	ENST00000515401		TCGA	RV	BRCA	TCGA-BH-A0B3-01A	HSF1	chr8	145515556	+	ADAMTS12	chr5	33596165	-
5CDS-intron	ENST00000534064	ENST00000263681		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000534064	ENST00000527458		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000534064	ENST00000532497		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000534064	ENST00000532784		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000535943	ENST00000263681		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000535943	ENST00000527458		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000535943	ENST00000532497		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000535943	ENST00000532784		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000525931	ENST00000263681		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000525931	ENST00000527458		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000525931	ENST00000532497		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000525931	ENST00000532784		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000529807	ENST00000263681		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000529807	ENST00000527458		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000529807	ENST00000532497		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
5CDS-intron	ENST00000529807	ENST00000532784		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000527522	ENST00000263681		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000527522	ENST00000527458		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000527522	ENST00000532497		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
intron-intron	ENST00000527522	ENST00000532784		TCGA	RV	BRCA	TCGA-A8-A0A6-01A	INTS4	chr11	77690042	-	POLD3	chr11	74379822	+
In-frame	ENST00000287263	ENST00000526986		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
5CDS-intron	ENST00000287263	ENST00000310442		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
5CDS-intron	ENST00000287263	ENST00000525925		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
In-frame	ENST00000330843	ENST00000526986		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
5CDS-intron	ENST00000330843	ENST00000310442		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
5CDS-intron	ENST00000330843	ENST00000525925		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-3CDS	ENST00000522727	ENST00000526986		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-intron	ENST00000522727	ENST00000310442		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-intron	ENST00000522727	ENST00000525925		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-3CDS	ENST00000523182	ENST00000526986		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-intron	ENST00000523182	ENST00000310442		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-intron	ENST00000523182	ENST00000525925		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-3CDS	ENST00000524118	ENST00000526986		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-intron	ENST00000524118	ENST00000310442		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
intron-intron	ENST00000524118	ENST00000525925		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	RAB11FIP1	chr8	37756589	-	ZDHHC24	chr11	66294477	-
5UTR-3CDS	ENST00000354618	ENST00000544305		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000354618	ENST00000374630		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000354618	ENST00000400191		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000354618	ENST00000374632		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000354618	ENST00000374627		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-intron	ENST00000354618	ENST00000465676		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000469141	ENST00000544305		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000469141	ENST00000374630		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000469141	ENST00000400191		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000469141	ENST00000374632		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-3CDS	ENST00000469141	ENST00000374627		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5UTR-intron	ENST00000469141	ENST00000465676		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
intron-3CDS	ENST00000466743	ENST00000544305		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
intron-3CDS	ENST00000466743	ENST00000374630		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
intron-3CDS	ENST00000466743	ENST00000400191		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
intron-3CDS	ENST00000466743	ENST00000374632		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
intron-3CDS	ENST00000466743	ENST00000374627		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
intron-intron	ENST00000466743	ENST00000465676		TCGA	RV	BRCA	TCGA-A7-A26J-01A	THRAP3	chr1	36725085	+	EPHB2	chr1	23107914	+
5CDS-5UTR	ENST00000551577	ENST00000266529		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-5UTR	ENST00000551577	ENST00000552673		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-intron	ENST00000551577	ENST00000551102		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-5UTR	ENST00000266534	ENST00000266529		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-5UTR	ENST00000266534	ENST00000552673		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-intron	ENST00000266534	ENST00000551102		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-5UTR	ENST00000536799	ENST00000266529		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-5UTR	ENST00000536799	ENST00000552673		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
5CDS-intron	ENST00000536799	ENST00000551102		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
intron-5UTR	ENST00000546978	ENST00000266529		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
intron-5UTR	ENST00000546978	ENST00000552673		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
intron-intron	ENST00000546978	ENST00000551102		TCGA	RV	BRCA	TCGA-E2-A14T-01A	TMEM117	chr12	44238731	+	ZCRB1	chr12	42717906	-
Frame-shit	ENST00000316059	ENST00000310653		TCGA	RV	BRCA	TCGA-A8-A086-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000336083		TCGA	RV	BRCA	TCGA-A8-A086-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000536566		TCGA	RV	BRCA	TCGA-A8-A086-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000541588		TCGA	RV	BRCA	TCGA-A8-A086-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
In-frame	ENST00000310343	ENST00000344795		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
In-frame	ENST00000310343	ENST00000373852		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
In-frame	ENST00000310343	ENST00000342422		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
In-frame	ENST00000524655	ENST00000344795		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
In-frame	ENST00000524655	ENST00000373852		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
In-frame	ENST00000524655	ENST00000342422		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
intron-3CDS	ENST00000392657	ENST00000344795		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
intron-3CDS	ENST00000392657	ENST00000373852		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
intron-3CDS	ENST00000392657	ENST00000342422		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
intron-3CDS	ENST00000527272	ENST00000344795		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
intron-3CDS	ENST00000527272	ENST00000373852		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
intron-3CDS	ENST00000527272	ENST00000342422		TCGA	RV	BRCA	TCGA-EW-A2FW-01A	ARHGAP32	chr11	128932175	-	C20orf24	chr20	35236118	+
5CDS-5UTR	ENST00000435504	ENST00000597960		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000435504	ENST00000610101		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000435504	ENST00000596558		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000435504	ENST00000222308		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000435504	ENST00000608443		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000435504	ENST00000453489		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000336112	ENST00000597960		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000336112	ENST00000610101		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000336112	ENST00000596558		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000336112	ENST00000222308		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000336112	ENST00000608443		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000336112	ENST00000453489		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000272341	ENST00000597960		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000272341	ENST00000610101		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000272341	ENST00000596558		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000272341	ENST00000222308		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000272341	ENST00000608443		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000272341	ENST00000453489		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000404843	ENST00000597960		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000404843	ENST00000610101		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000404843	ENST00000596558		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000404843	ENST00000222308		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000404843	ENST00000608443		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000404843	ENST00000453489		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000497092	ENST00000597960		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000497092	ENST00000610101		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000497092	ENST00000596558		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000497092	ENST00000222308		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000497092	ENST00000608443		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000497092	ENST00000453489		TCGA	RV	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26058407	-	FKBP8	chr19	18652805	-
5UTR-3CDS	ENST00000244769	ENST00000573500		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000244769	ENST00000576221		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000244769	ENST00000268896		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000244769	ENST00000576183		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-5UTR	ENST00000244769	ENST00000325214		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-3CDS	ENST00000436367	ENST00000573500		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000436367	ENST00000576221		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000436367	ENST00000268896		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000436367	ENST00000576183		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
5UTR-5UTR	ENST00000436367	ENST00000325214		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
intron-3CDS	ENST00000467008	ENST00000573500		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
intron-intron	ENST00000467008	ENST00000576221		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
intron-intron	ENST00000467008	ENST00000268896		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
intron-intron	ENST00000467008	ENST00000576183		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
intron-5UTR	ENST00000467008	ENST00000325214		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	ATXN1	chr6	16486203	-	PCTP	chr17	53844696	+
intron-intron	ENST00000483612	ENST00000264818		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
intron-intron	ENST00000483612	ENST00000524462		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
intron-intron	ENST00000483612	ENST00000525621		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
intron-intron	ENST00000483612	ENST00000529370		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
intron-intron	ENST00000483612	ENST00000529422		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292401	ENST00000264818		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292401	ENST00000524462		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292401	ENST00000525621		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292401	ENST00000529370		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292401	ENST00000529422		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000411734	ENST00000264818		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000411734	ENST00000524462		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000411734	ENST00000525621		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000411734	ENST00000529370		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000411734	ENST00000529422		TCGA	RV	BRCA	TCGA-E9-A5UO-01A	AZGP1	chr7	99564354	-	TYK2	chr19	10491352	-
In-frame	ENST00000344773	ENST00000306156		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000344773	ENST00000467135		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000344773	ENST00000394874		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
In-frame	ENST00000379624	ENST00000306156		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000379624	ENST00000467135		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000379624	ENST00000394874		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
In-frame	ENST00000342045	ENST00000306156		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000342045	ENST00000467135		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000342045	ENST00000394874		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
In-frame	ENST00000379632	ENST00000306156		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000379632	ENST00000467135		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000379632	ENST00000394874		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
In-frame	ENST00000361704	ENST00000306156		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000361704	ENST00000467135		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5CDS-intron	ENST00000361704	ENST00000394874		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
intron-3CDS	ENST00000603461	ENST00000306156		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
intron-intron	ENST00000603461	ENST00000467135		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
intron-intron	ENST00000603461	ENST00000394874		TCGA	RV	BRCA	TCGA-C8-A134-01A	BRE	chr2	28268666	+	PRKCE	chr2	46313347	+
5UTR-5UTR	ENST00000373233	ENST00000356562		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
5UTR-5UTR	ENST00000373233	ENST00000324384		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
5UTR-5UTR	ENST00000309279	ENST00000356562		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
5UTR-5UTR	ENST00000309279	ENST00000324384		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
5UTR-5UTR	ENST00000373222	ENST00000356562		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
5UTR-5UTR	ENST00000373222	ENST00000324384		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
intron-5UTR	ENST00000480022	ENST00000356562		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
intron-5UTR	ENST00000480022	ENST00000324384		TCGA	RV	BRCA	TCGA-AQ-A54O-01A	CHD6	chr20	40246979	-	WFDC11	chr20	44279290	-
intron-3CDS	ENST00000524630	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000524630	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000529919	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000529919	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000399039	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000399039	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000360682	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000360682	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361796	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361796	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361391	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361391	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530094	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530094	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000428599	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000428599	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361332	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361332	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000527467	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000527467	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000415361	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000415361	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532245	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532245	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532463	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532463	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528232	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528232	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529986	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529986	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000531014	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000531014	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000358694	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000358694	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526772	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526772	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532787	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532787	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000533667	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000533667	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529873	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529873	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000525902	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000525902	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529526	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529526	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532649	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532649	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000426142	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000426142	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532844	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532844	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528621	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528621	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000399050	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000399050	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526357	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526357	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530748	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530748	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000534579	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000534579	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526938	ENST00000378312		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526938	ENST00000278422		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000585509	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000585509	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000585509	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-3CDS	ENST00000589297	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000589297	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000589297	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-3CDS	ENST00000591455	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000591455	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000591455	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-3CDS	ENST00000446868	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000446868	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000446868	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-3CDS	ENST00000361101	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000361101	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000361101	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-3CDS	ENST00000589296	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000589296	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000589296	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-3CDS	ENST00000586175	ENST00000303375		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000586175	ENST00000446119		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
intron-intron	ENST00000586175	ENST00000580916		TCGA	RV	BRCA	TCGA-D8-A27N-01A	CYTH1	chr17	76732774	-	MRC2	chr17	60741909	+
Frame-shit	ENST00000311172	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000311172	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000311172	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000311172	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000311172	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000311172	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000311172	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000311172	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409314	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409314	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409314	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409314	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409314	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409314	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409314	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409314	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409418	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409418	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409418	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409418	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409418	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409418	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409418	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409418	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000458644	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000458644	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000458644	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000458644	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000458644	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000458644	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000458644	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000458644	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409853	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000409853	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
In-frame	ENST00000409853	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
In-frame	ENST00000409853	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409853	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409853	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409853	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000409853	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000409263	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000409263	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000409263	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000409263	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000409263	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000409263	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000409263	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000409263	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	FCHSD2	chr11	72632873	-	SHANK2	chr11	70319544	-
In-frame	ENST00000424843	ENST00000445593		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000424843	ENST00000521545		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000276654	ENST00000445593		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000276654	ENST00000521545		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518375	ENST00000445593		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518375	ENST00000521545		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
intron-intron	ENST00000591142	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591142	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591142	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591142	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591142	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000591601	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000591601	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000591601	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000591601	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000591601	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000309340	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000309340	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000309340	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000309340	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000309340	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000250896	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000250896	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000250896	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000250896	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5CDS-intron	ENST00000250896	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5UTR-intron	ENST00000541165	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5UTR-intron	ENST00000541165	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5UTR-intron	ENST00000541165	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5UTR-intron	ENST00000541165	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5UTR-intron	ENST00000541165	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591588	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591588	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591588	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591588	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000591588	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000588014	ENST00000262961		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000588014	ENST00000591965		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000588014	ENST00000439086		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000588014	ENST00000592398		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
intron-intron	ENST00000588014	ENST00000591712		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	MKNK2	chr19	2046366	-	ZFR2	chr19	3852612	-
5UTR-3CDS	ENST00000360540	ENST00000298139		TCGA	RV	BRCA	TCGA-A8-A07P-01A	PCMTD1	chr8	52811490	-	WRN	chr8	30998946	+
In-frame	ENST00000544451	ENST00000298139		TCGA	RV	BRCA	TCGA-A8-A07P-01A	PCMTD1	chr8	52811490	-	WRN	chr8	30998946	+
5UTR-3CDS	ENST00000519559	ENST00000298139		TCGA	RV	BRCA	TCGA-A8-A07P-01A	PCMTD1	chr8	52811490	-	WRN	chr8	30998946	+
5UTR-3CDS	ENST00000522514	ENST00000298139		TCGA	RV	BRCA	TCGA-A8-A07P-01A	PCMTD1	chr8	52811490	-	WRN	chr8	30998946	+
5UTR-3CDS	ENST00000521344	ENST00000298139		TCGA	RV	BRCA	TCGA-A8-A07P-01A	PCMTD1	chr8	52811490	-	WRN	chr8	30998946	+
In-frame	ENST00000374820	ENST00000580974		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000374820	ENST00000299954		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000374820	ENST00000335257		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000374820	ENST00000581322		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000452740	ENST00000580974		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000452740	ENST00000299954		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000452740	ENST00000335257		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000452740	ENST00000581322		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000480175	ENST00000580974		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000480175	ENST00000299954		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000480175	ENST00000335257		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000480175	ENST00000581322		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000396000	ENST00000348697		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000396000	ENST00000402984		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000396000	ENST00000262722		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000396000	ENST00000327858		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000396000	ENST00000442170		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000396000	ENST00000340923		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
5CDS-3UTR	ENST00000396000	ENST00000476366		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000262735	ENST00000348697		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000262735	ENST00000402984		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000262735	ENST00000262722		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000262735	ENST00000327858		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000262735	ENST00000442170		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000262735	ENST00000340923		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
5CDS-3UTR	ENST00000262735	ENST00000476366		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000407236	ENST00000348697		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000407236	ENST00000402984		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000407236	ENST00000262722		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000407236	ENST00000327858		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000407236	ENST00000442170		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000407236	ENST00000340923		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
5CDS-3UTR	ENST00000407236	ENST00000476366		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3CDS	ENST00000481567	ENST00000348697		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3CDS	ENST00000481567	ENST00000402984		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3CDS	ENST00000481567	ENST00000262722		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3CDS	ENST00000481567	ENST00000327858		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3CDS	ENST00000481567	ENST00000442170		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3CDS	ENST00000481567	ENST00000340923		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
intron-3UTR	ENST00000481567	ENST00000476366		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000402126	ENST00000348697		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000402126	ENST00000402984		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000402126	ENST00000262722		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000402126	ENST00000327858		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000402126	ENST00000442170		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000402126	ENST00000340923		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
5CDS-3UTR	ENST00000402126	ENST00000476366		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000434345	ENST00000348697		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000434345	ENST00000402984		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000434345	ENST00000262722		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000434345	ENST00000327858		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000434345	ENST00000442170		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
In-frame	ENST00000434345	ENST00000340923		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
5CDS-3UTR	ENST00000434345	ENST00000476366		TCGA	RV	BRCA	TCGA-UU-A93S-01A	PPARA	chr22	46594488	+	FBLN1	chr22	45942965	+
Frame-shit	ENST00000374761	ENST00000394140		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAP1GAP	chr1	21936068	-	NIT2	chr3	100073616	+
Frame-shit	ENST00000290101	ENST00000394140		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAP1GAP	chr1	21936068	-	NIT2	chr3	100073616	+
Frame-shit	ENST00000374763	ENST00000394140		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAP1GAP	chr1	21936068	-	NIT2	chr3	100073616	+
Frame-shit	ENST00000374765	ENST00000394140		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAP1GAP	chr1	21936068	-	NIT2	chr3	100073616	+
Frame-shit	ENST00000542643	ENST00000394140		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAP1GAP	chr1	21936068	-	NIT2	chr3	100073616	+
intron-3CDS	ENST00000374757	ENST00000394140		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	RAP1GAP	chr1	21936068	-	NIT2	chr3	100073616	+
intron-3CDS	ENST00000274811	ENST00000395065		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
intron-5UTR	ENST00000274811	ENST00000425644		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
intron-5UTR	ENST00000274811	ENST00000425463		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
5UTR-3CDS	ENST00000537487	ENST00000395065		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
5UTR-5UTR	ENST00000537487	ENST00000425644		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
5UTR-5UTR	ENST00000537487	ENST00000425463		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
intron-3CDS	ENST00000509404	ENST00000395065		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
intron-5UTR	ENST00000509404	ENST00000425644		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
intron-5UTR	ENST00000509404	ENST00000425463		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	RNF44	chr5	175964732	-	NXF3	chrX	102339423	-
Frame-shit	ENST00000443572	ENST00000450662		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
5CDS-5UTR	ENST00000443572	ENST00000305286		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
Frame-shit	ENST00000406116	ENST00000450662		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
5CDS-5UTR	ENST00000406116	ENST00000305286		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
Frame-shit	ENST00000225577	ENST00000450662		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
5CDS-5UTR	ENST00000225577	ENST00000305286		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
5UTR-3CDS	ENST00000393021	ENST00000450662		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
5UTR-5UTR	ENST00000393021	ENST00000305286		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
intron-3CDS	ENST00000587061	ENST00000450662		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
intron-5UTR	ENST00000587061	ENST00000305286		TCGA	RV	BRCA	TCGA-AN-A0FD-01A	RPS6KB1	chr17	57970686	+	EFCAB3	chr17	60460324	+
In-frame	ENST00000040877	ENST00000408888		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	TARBP1	chr1	234561419	-	RBM34	chr1	235311762	-
In-frame	ENST00000040877	ENST00000366606		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	TARBP1	chr1	234561419	-	RBM34	chr1	235311762	-
5CDS-intron	ENST00000040877	ENST00000495224		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	TARBP1	chr1	234561419	-	RBM34	chr1	235311762	-
intron-3CDS	ENST00000483404	ENST00000408888		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	TARBP1	chr1	234561419	-	RBM34	chr1	235311762	-
intron-3CDS	ENST00000483404	ENST00000366606		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	TARBP1	chr1	234561419	-	RBM34	chr1	235311762	-
intron-intron	ENST00000483404	ENST00000495224		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	TARBP1	chr1	234561419	-	RBM34	chr1	235311762	-
In-frame	ENST00000539115	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
In-frame	ENST00000379188	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
In-frame	ENST00000379177	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
In-frame	ENST00000304543	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
intron-3CDS	ENST00000459724	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
In-frame	ENST00000540034	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
In-frame	ENST00000338565	ENST00000328046		TCGA	RV	BRCA	TCGA-BH-A1EX-01A	ZFX	chrX	24227157	+	KLHL15	chrX	24007147	-
Frame-shit	ENST00000345813	ENST00000382722		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000345813	ENST00000587995		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000345813	ENST00000588077		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000345813	ENST00000586184		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000345813	ENST00000585708		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000345813	ENST00000585732		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000345813	ENST00000539048		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000345813	ENST00000538450		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000345813	ENST00000538027		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000326804	ENST00000382722		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000326804	ENST00000587995		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000326804	ENST00000588077		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000326804	ENST00000586184		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000326804	ENST00000585708		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000326804	ENST00000585732		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000326804	ENST00000539048		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000326804	ENST00000538450		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000326804	ENST00000538027		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000424679	ENST00000382722		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000424679	ENST00000587995		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000424679	ENST00000588077		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000424679	ENST00000586184		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
Frame-shit	ENST00000424679	ENST00000585708		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000424679	ENST00000585732		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000424679	ENST00000539048		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000424679	ENST00000538450		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
5CDS-intron	ENST00000424679	ENST00000538027		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-3CDS	ENST00000597818	ENST00000382722		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-3CDS	ENST00000597818	ENST00000587995		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-3CDS	ENST00000597818	ENST00000588077		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-3CDS	ENST00000597818	ENST00000586184		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-3CDS	ENST00000597818	ENST00000585708		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-intron	ENST00000597818	ENST00000585732		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-intron	ENST00000597818	ENST00000539048		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-intron	ENST00000597818	ENST00000538450		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
3UTR-intron	ENST00000597818	ENST00000538027		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	ZNF274	chr19	58721439	+	CACNA2D4	chr12	1996235	-
In-frame	ENST00000532485	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000532485	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000532485	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000532485	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000532485	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000532485	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000532485	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000532485	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000530182	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000530182	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000530182	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000530182	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000530182	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000530182	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-intron	ENST00000530182	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000530182	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000526597	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000526597	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000526597	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000526597	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000526597	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000526597	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000526597	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000526597	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000533873	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000533873	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000533873	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000533873	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000533873	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000533873	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000533873	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000533873	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000538157	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000538157	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000538157	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000538157	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000538157	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000538157	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000538157	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000538157	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000544113	ENST00000356136		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000544113	ENST00000528420		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000544113	ENST00000533454		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000544113	ENST00000531818		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000544113	ENST00000532130		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
In-frame	ENST00000544113	ENST00000539288		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000544113	ENST00000525872		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000544113	ENST00000538870		TCGA	RV	BRCA	TCGA-E2-A109-01A	ACER3	chr11	76730820	+	UVRAG	chr11	75826968	+
5UTR-3CDS	ENST00000291572	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000291572	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000291572	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000291572	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3UTR	ENST00000291572	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-intron	ENST00000291572	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3UTR	ENST00000398061	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-intron	ENST00000398061	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3UTR	ENST00000327505	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-intron	ENST00000327505	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000398063	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000398063	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000398058	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000398058	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000546158	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000546158	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000398081		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000468090		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000291565		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000327574		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000479117	ENST00000476313		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000479117	ENST00000467908		TCGA	RV	BRCA	TCGA-A8-A07O-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
In-frame	ENST00000589222	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000589222	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000589222	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000407086	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000407086	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000407086	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000390652	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000390652	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000390652	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000408905	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000408905	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000408905	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000588462	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000588462	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
In-frame	ENST00000588462	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000585744	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000585744	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000585744	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000588874	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000588874	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000588874	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000585812	ENST00000269080		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000585812	ENST00000430352		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
intron-3CDS	ENST00000585812	ENST00000586539		TCGA	RV	BRCA	TCGA-EW-A1OX-01A	BCAS3	chr17	58885437	+	ABCA8	chr17	66865920	-
Frame-shit	ENST00000335221	ENST00000269554		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
5CDS-5UTR	ENST00000335221	ENST00000311500		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
Frame-shit	ENST00000321892	ENST00000269554		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
5CDS-5UTR	ENST00000321892	ENST00000311500		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
Frame-shit	ENST00000306378	ENST00000269554		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
5CDS-5UTR	ENST00000306378	ENST00000311500		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
Frame-shit	ENST00000424123	ENST00000269554		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
5CDS-5UTR	ENST00000424123	ENST00000311500		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
intron-3CDS	ENST00000577770	ENST00000269554		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000577770	ENST00000311500		TCGA	RV	BRCA	TCGA-C8-A12P-01A	BPTF	chr17	65822453	+	PIP4K2B	chr17	36943173	-
In-frame	ENST00000277817	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000277817	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000277817	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000277817	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000277817	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000277817	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000277817	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000412272	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000412272	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
In-frame	ENST00000412272	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000412272	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000412272	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000412272	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000412272	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000395198	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000395198	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
In-frame	ENST00000395198	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000395198	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000395198	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000395198	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000395198	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000373700	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000373700	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
In-frame	ENST00000373700	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000373700	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000373700	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000373700	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
5CDS-intron	ENST00000373700	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-3CDS	ENST00000395187	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-3CDS	ENST00000395187	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-3CDS	ENST00000395187	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-intron	ENST00000395187	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-intron	ENST00000395187	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-intron	ENST00000395187	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
3UTR-intron	ENST00000395187	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-3CDS	ENST00000480158	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-3CDS	ENST00000480158	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-3CDS	ENST00000480158	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000480158	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000480158	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000480158	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000480158	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-3CDS	ENST00000492996	ENST00000388768		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-3CDS	ENST00000492996	ENST00000602465		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-3CDS	ENST00000492996	ENST00000265865		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000492996	ENST00000399200		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000492996	ENST00000454950		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000492996	ENST00000472394		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
intron-intron	ENST00000492996	ENST00000342616		TCGA	RV	BRCA	TCGA-AR-A0U4-01A	HERC4	chr10	69792535	-	RUFY2	chr10	70105668	-
Frame-shit	ENST00000476258	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
Frame-shit	ENST00000476258	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000476258	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000476258	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-intron	ENST00000476258	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000476258	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000476258	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000476258	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
Frame-shit	ENST00000405458	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
Frame-shit	ENST00000405458	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000405458	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000405458	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-intron	ENST00000405458	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000405458	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000405458	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000405458	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000409753	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000409753	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000409753	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000409753	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-intron	ENST00000409753	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000409753	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000409753	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000409753	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000482348	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000482348	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000482348	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000482348	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-intron	ENST00000482348	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000482348	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000482348	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000482348	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-3CDS	ENST00000356033	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-3CDS	ENST00000356033	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000356033	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000356033	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-intron	ENST00000356033	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000356033	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000356033	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000356033	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000470924	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000470924	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000470924	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000470924	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-intron	ENST00000470924	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000470924	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000470924	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000470924	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
Frame-shit	ENST00000481647	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
Frame-shit	ENST00000481647	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000481647	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000481647	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-intron	ENST00000481647	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000481647	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000481647	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000481647	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-3CDS	ENST00000392566	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-3CDS	ENST00000392566	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000392566	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000392566	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-intron	ENST00000392566	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000392566	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000392566	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000392566	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-3CDS	ENST00000581874	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-3CDS	ENST00000581874	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-5UTR	ENST00000581874	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-5UTR	ENST00000581874	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-intron	ENST00000581874	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-5UTR	ENST00000581874	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-5UTR	ENST00000581874	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
3UTR-5UTR	ENST00000581874	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-3CDS	ENST00000465454	ENST00000351904		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-3CDS	ENST00000465454	ENST00000245541		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000465454	ENST00000578348		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000465454	ENST00000582486		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-intron	ENST00000465454	ENST00000538886		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000465454	ENST00000582717		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000465454	ENST00000537686		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
intron-5UTR	ENST00000465454	ENST00000579743		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	HN1	chr17	73142761	-	GGA3	chr17	73242877	-
In-frame	ENST00000372425	ENST00000371191		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372425	ENST00000407417		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372425	ENST00000479364		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372425	ENST00000371189		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372425	ENST00000403491		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372425	ENST00000371187		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372425	ENST00000485903		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372425	ENST00000371185		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372425	ENST00000371184		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372425	ENST00000357977		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
Frame-shit	ENST00000583037	ENST00000371191		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
Frame-shit	ENST00000583037	ENST00000407417		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000583037	ENST00000479364		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000583037	ENST00000371189		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000583037	ENST00000403491		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000583037	ENST00000371187		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000583037	ENST00000485903		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000583037	ENST00000371185		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000583037	ENST00000371184		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000583037	ENST00000357977		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372434	ENST00000371191		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372434	ENST00000407417		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372434	ENST00000479364		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372434	ENST00000371189		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372434	ENST00000403491		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372434	ENST00000371187		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372434	ENST00000485903		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372434	ENST00000371185		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372434	ENST00000371184		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372434	ENST00000357977		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372432	ENST00000371191		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372432	ENST00000407417		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372432	ENST00000479364		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372432	ENST00000371189		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372432	ENST00000403491		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372432	ENST00000371187		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372432	ENST00000485903		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372432	ENST00000371185		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372432	ENST00000371184		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372432	ENST00000357977		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372426	ENST00000371191		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000372426	ENST00000407417		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372426	ENST00000479364		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372426	ENST00000371189		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372426	ENST00000403491		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372426	ENST00000371187		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372426	ENST00000485903		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000372426	ENST00000371185		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372426	ENST00000371184		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000372426	ENST00000357977		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000486909	ENST00000371191		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
In-frame	ENST00000486909	ENST00000407417		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000486909	ENST00000479364		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000486909	ENST00000371189		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000486909	ENST00000403491		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000486909	ENST00000371187		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000486909	ENST00000485903		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000486909	ENST00000371185		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000486909	ENST00000371184		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5CDS-intron	ENST00000486909	ENST00000357977		TCGA	RV	BRCA	TCGA-OL-A5RZ-01A	HYI	chr1	43917319	-	NFIA	chr1	61798184	+
5UTR-3CDS	ENST00000420083	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-intron	ENST00000420083	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-3CDS	ENST00000449870	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-intron	ENST00000449870	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-3CDS	ENST00000318511	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-intron	ENST00000318511	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-3CDS	ENST00000407004	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-intron	ENST00000407004	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-3CDS	ENST00000589998	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
5UTR-intron	ENST00000589998	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-3CDS	ENST00000250241	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-intron	ENST00000250241	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-3CDS	ENST00000592763	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-intron	ENST00000592763	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-3CDS	ENST00000588657	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-intron	ENST00000588657	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-3CDS	ENST00000590261	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-intron	ENST00000590261	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-3CDS	ENST00000586544	ENST00000245907		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
intron-intron	ENST00000586544	ENST00000599668		TCGA	RV	BRCA	TCGA-A2-A0YJ-01A	ILF3	chr19	10765163	+	C3	chr19	6697805	-
In-frame	ENST00000424843	ENST00000445593		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000424843	ENST00000521545		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000276654	ENST00000445593		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000276654	ENST00000521545		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518375	ENST00000445593		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518375	ENST00000521545		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	LRP12	chr8	105601047	-	LAPTM4B	chr8	98863625	+
5CDS-intron	ENST00000280379	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000280379	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000280379	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000280379	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393632	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393632	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393632	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393632	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393630	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393630	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393630	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393630	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000546600	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000546600	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000546600	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000546600	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552738	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552738	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552738	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552738	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393629	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393629	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393629	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000393629	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552115	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552115	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552115	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000552115	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000549378	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000549378	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000549378	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000549378	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000551397	ENST00000422156		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000551397	ENST00000540759		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000551397	ENST00000550465		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000551397	ENST00000354947		TCGA	RV	BRCA	TCGA-E2-A9RU-01A	MON2	chr12	62943610	+	PIP4K2C	chr12	57989671	+
Frame-shit	ENST00000298198	ENST00000328257		TCGA	RV	BRCA	TCGA-Z7-A8R6-01A	PGM2L1	chr11	74109096	-	PPME1	chr11	73961999	+
Frame-shit	ENST00000298198	ENST00000398427		TCGA	RV	BRCA	TCGA-Z7-A8R6-01A	PGM2L1	chr11	74109096	-	PPME1	chr11	73961999	+
5CDS-intron	ENST00000298198	ENST00000542710		TCGA	RV	BRCA	TCGA-Z7-A8R6-01A	PGM2L1	chr11	74109096	-	PPME1	chr11	73961999	+
5CDS-intron	ENST00000298198	ENST00000543525		TCGA	RV	BRCA	TCGA-Z7-A8R6-01A	PGM2L1	chr11	74109096	-	PPME1	chr11	73961999	+
Frame-shit	ENST00000455789	ENST00000284719		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000455789	ENST00000344357		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000455789	ENST00000428402		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000455789	ENST00000409546		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-intron	ENST00000455789	ENST00000392560		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
In-frame	ENST00000310015	ENST00000284719		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000310015	ENST00000344357		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000310015	ENST00000428402		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000310015	ENST00000409546		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-intron	ENST00000310015	ENST00000392560		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
In-frame	ENST00000418194	ENST00000284719		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000418194	ENST00000344357		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000418194	ENST00000428402		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-5UTR	ENST00000418194	ENST00000409546		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
5CDS-intron	ENST00000418194	ENST00000392560		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
intron-3CDS	ENST00000483084	ENST00000284719		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
intron-5UTR	ENST00000483084	ENST00000344357		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
intron-5UTR	ENST00000483084	ENST00000428402		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
intron-5UTR	ENST00000483084	ENST00000409546		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
intron-intron	ENST00000483084	ENST00000392560		TCGA	RV	BRCA	TCGA-AO-A12F-01A	SP3	chr2	174819601	-	OLA1	chr2	175006728	-
3UTR-3CDS	ENST00000281030	ENST00000353172		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	THRSP	chr11	77775387	+	KCTD14	chr11	77728316	-
3UTR-3CDS	ENST00000281030	ENST00000533144		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	THRSP	chr11	77775387	+	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000432054	ENST00000254286		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129513167	-	ACTR10	chr14	58669573	+
intron-3CDS	ENST00000393238	ENST00000254286		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129513167	-	ACTR10	chr14	58669573	+
intron-3CDS	ENST00000426664	ENST00000254286		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129513167	-	ACTR10	chr14	58669573	+
Frame-shit	ENST00000329333	ENST00000254286		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129513167	-	ACTR10	chr14	58669573	+
intron-3CDS	ENST00000515024	ENST00000254286		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129513167	-	ACTR10	chr14	58669573	+
5CDS-5UTR	ENST00000401558	ENST00000368995		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000401558	ENST00000368993		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000401558	ENST00000322343		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000401558	ENST00000361824		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000401558	ENST00000476530		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000404992	ENST00000368995		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000404992	ENST00000368993		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000404992	ENST00000322343		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000404992	ENST00000361824		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000404992	ENST00000476530		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000406957	ENST00000368995		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000406957	ENST00000368993		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000406957	ENST00000322343		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000406957	ENST00000361824		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000406957	ENST00000476530		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000481214	ENST00000368995		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000481214	ENST00000368993		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000481214	ENST00000322343		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000481214	ENST00000361824		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000481214	ENST00000476530		TCGA	RV	BRCA	TCGA-E9-A22D-01A	XPO1	chr2	61725808	-	HORMAD1	chr1	150692014	-
3UTR-5UTR	ENST00000532456	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
3UTR-5UTR	ENST00000532456	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
3UTR-5UTR	ENST00000532456	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5UTR-5UTR	ENST00000539648	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5UTR-5UTR	ENST00000539648	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5UTR-5UTR	ENST00000539648	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000528499	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000528499	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000528499	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000263574	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000263574	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000263574	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000345598	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000345598	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000345598	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000338167	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000338167	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
5CDS-5UTR	ENST00000338167	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
intron-5UTR	ENST00000278756	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
intron-5UTR	ENST00000278756	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
intron-5UTR	ENST00000278756	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
intron-5UTR	ENST00000543137	ENST00000529694		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
intron-5UTR	ENST00000543137	ENST00000338350		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
intron-5UTR	ENST00000543137	ENST00000533599		TCGA	RV	BRCA	TCGA-AN-A0FS-01A	APLP2	chr11	129939977	+	KCNJ5	chr11	128781159	+
In-frame	ENST00000368315	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000368315	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000368315	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000368315	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
In-frame	ENST00000313695	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000313695	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000313695	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000313695	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
In-frame	ENST00000361247	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000361247	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000361247	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000361247	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
Frame-shit	ENST00000368316	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000368316	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000368316	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000368316	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
Frame-shit	ENST00000462460	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000462460	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000462460	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000462460	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
intron-3CDS	ENST00000477754	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
intron-intron	ENST00000477754	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
intron-intron	ENST00000477754	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
intron-intron	ENST00000477754	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
In-frame	ENST00000313667	ENST00000295702		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000313667	ENST00000529008		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000313667	ENST00000496742		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000313667	ENST00000480567		TCGA	RV	BRCA	TCGA-AR-A256-01A	ARHGEF2	chr1	155932724	-	SSR2	chr1	155981678	-
5CDS-intron	ENST00000455895	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000455895	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000413080	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000413080	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000341071	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000341071	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
intron-intron	ENST00000526031	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
intron-intron	ENST00000526031	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000419121	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000419121	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000446293	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000446293	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
intron-intron	ENST00000463967	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
intron-intron	ENST00000463967	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000449308	ENST00000469100		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000449308	ENST00000373477		TCGA	RV	BRCA	TCGA-C8-A26X-01A	BSDC1	chr1	32852380	-	YARS	chr1	33276658	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A0DC-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000337147	ENST00000025008		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
Frame-shit	ENST00000337147	ENST00000435644		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5CDS-intron	ENST00000337147	ENST00000521611		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5CDS-intron	ENST00000337147	ENST00000539297		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
In-frame	ENST00000367075	ENST00000025008		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
In-frame	ENST00000367075	ENST00000435644		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5CDS-intron	ENST00000367075	ENST00000521611		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5CDS-intron	ENST00000367075	ENST00000539297		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
Frame-shit	ENST00000392177	ENST00000025008		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
Frame-shit	ENST00000392177	ENST00000435644		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5CDS-intron	ENST00000392177	ENST00000521611		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5CDS-intron	ENST00000392177	ENST00000539297		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5UTR-3CDS	ENST00000476189	ENST00000025008		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5UTR-3CDS	ENST00000476189	ENST00000435644		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5UTR-intron	ENST00000476189	ENST00000521611		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
5UTR-intron	ENST00000476189	ENST00000539297		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	EZR	chr6	159206341	-	RB1CC1	chr8	53537347	-
In-frame	ENST00000205061	ENST00000323786		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000205061	ENST00000393612		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000205061	ENST00000564653		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000422840	ENST00000323786		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000422840	ENST00000393612		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000422840	ENST00000564653		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000447066	ENST00000323786		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000447066	ENST00000393612		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
In-frame	ENST00000447066	ENST00000564653		TCGA	RV	BRCA	TCGA-BH-A1F8-01A	GLG1	chr16	74640555	-	COG4	chr16	70553634	-
Frame-shit	ENST00000519065	ENST00000398178		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
Frame-shit	ENST00000519065	ENST00000334268		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5CDS-intron	ENST00000519065	ENST00000546248		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5CDS-intron	ENST00000519065	ENST00000542443		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
Frame-shit	ENST00000398283	ENST00000398178		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
Frame-shit	ENST00000398283	ENST00000334268		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5CDS-intron	ENST00000398283	ENST00000546248		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5CDS-intron	ENST00000398283	ENST00000542443		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
intron-3CDS	ENST00000519108	ENST00000398178		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
intron-3CDS	ENST00000519108	ENST00000334268		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
intron-intron	ENST00000519108	ENST00000546248		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
intron-intron	ENST00000519108	ENST00000542443		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5UTR-3CDS	ENST00000368632	ENST00000398178		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5UTR-3CDS	ENST00000368632	ENST00000334268		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5UTR-intron	ENST00000368632	ENST00000546248		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
5UTR-intron	ENST00000368632	ENST00000542443		TCGA	RV	BRCA	TCGA-BH-A203-01A	HDAC2	chr6	114292021	-	TRDN	chr6	123545276	-
Frame-shit	ENST00000372396	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
Frame-shit	ENST00000372396	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
Frame-shit	ENST00000372396	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
Frame-shit	ENST00000372396	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
Frame-shit	ENST00000372396	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
Frame-shit	ENST00000372396	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
5CDS-3UTR	ENST00000372396	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3CDS	ENST00000463151	ENST00000405694		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3CDS	ENST00000463151	ENST00000368607		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3CDS	ENST00000463151	ENST00000271889		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3CDS	ENST00000463151	ENST00000368601		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3CDS	ENST00000463151	ENST00000368603		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3CDS	ENST00000463151	ENST00000368600		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
intron-3UTR	ENST00000463151	ENST00000468845		TCGA	RV	BRCA	TCGA-BH-A18J-01A	KDM4A	chr1	44133690	+	CREB3L4	chr1	153945220	+
Frame-shit	ENST00000312865	ENST00000354293		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MED25	chr19	50322553	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000312865	ENST00000600199		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MED25	chr19	50322553	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000312865	ENST00000359032		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MED25	chr19	50322553	+	AP2A1	chr19	50285014	+
intron-3CDS	ENST00000538643	ENST00000354293		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MED25	chr19	50322553	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000538643	ENST00000600199		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MED25	chr19	50322553	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000538643	ENST00000359032		TCGA	RV	BRCA	TCGA-EW-A3U0-01A	MED25	chr19	50322553	+	AP2A1	chr19	50285014	+
In-frame	ENST00000457030	ENST00000354567		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
In-frame	ENST00000457030	ENST00000344720		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000457030	ENST00000317704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000457030	ENST00000478255		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
In-frame	ENST00000330010	ENST00000354567		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
In-frame	ENST00000330010	ENST00000344720		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000330010	ENST00000317704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000330010	ENST00000478255		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
intron-3CDS	ENST00000294624	ENST00000354567		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
intron-3CDS	ENST00000294624	ENST00000344720		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
intron-intron	ENST00000294624	ENST00000317704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
intron-intron	ENST00000294624	ENST00000478255		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
In-frame	ENST00000334785	ENST00000354567		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
In-frame	ENST00000334785	ENST00000344720		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000334785	ENST00000317704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000334785	ENST00000478255		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
3UTR-3CDS	ENST00000480732	ENST00000354567		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
3UTR-3CDS	ENST00000480732	ENST00000344720		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
3UTR-intron	ENST00000480732	ENST00000317704		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
3UTR-intron	ENST00000480732	ENST00000478255		TCGA	RV	BRCA	TCGA-B6-A0X1-01A	NEXN	chr1	78399164	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000331483	ENST00000309364		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000359180		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000317589		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000355397		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000429027		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000539256		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000299275		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000538714		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000543806		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000424268		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000540972		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331483	ENST00000510738		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000309364		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000359180		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000317589		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000355397		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000429027		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000539256		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000299275		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000538714		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000543806		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000424268		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000540972		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000576390	ENST00000510738		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000309364		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000359180		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000317589		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000355397		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000429027		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000539256		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000299275		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000538714		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000543806		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000424268		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000540972		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000439918	ENST00000510738		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000309364		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000359180		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000317589		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000355397		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000429027		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000539256		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000299275		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000538714		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000543806		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000424268		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000540972		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000472244	ENST00000510738		TCGA	RV	BRCA	TCGA-D8-A1JI-01A	P4HB	chr17	79801037	-	PLEKHA5	chr12	19441012	+
5UTR-3CDS	ENST00000392491	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
intron-3CDS	ENST00000607474	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
5UTR-3CDS	ENST00000368452	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
5UTR-3CDS	ENST00000368448	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
5UTR-3CDS	ENST00000392490	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
intron-3CDS	ENST00000258014	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
intron-3CDS	ENST00000354275	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
intron-3CDS	ENST00000368446	ENST00000360388		TCGA	RV	BRCA	TCGA-A8-A06R-01A	PKIB	chr6	122954512	+	SLC35F1	chr6	118556672	+
In-frame	ENST00000481195	ENST00000609654		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000481195	ENST00000609383		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000481195	ENST00000536186		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000481195	ENST00000435240		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000481195	ENST00000265334		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000481195	ENST00000523054		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000481195	ENST00000521118		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5CDS-intron	ENST00000481195	ENST00000523832		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5CDS-intron	ENST00000481195	ENST00000521755		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5CDS-intron	ENST00000481195	ENST00000435211		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5CDS-intron	ENST00000481195	ENST00000522501		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000609654		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000609383		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000536186		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000435240		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000265334		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000523054		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-3CDS	ENST00000231504	ENST00000521118		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-intron	ENST00000231504	ENST00000523832		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-intron	ENST00000231504	ENST00000521755		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-intron	ENST00000231504	ENST00000435211		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
5UTR-intron	ENST00000231504	ENST00000522501		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	PPP2CA	chr5	133561451	-	CDKL3	chr5	133640258	-
In-frame	ENST00000413366	ENST00000443584		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
Frame-shit	ENST00000413366	ENST00000449996		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
Frame-shit	ENST00000413366	ENST00000262406		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
5CDS-intron	ENST00000413366	ENST00000577186		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
intron-3CDS	ENST00000583361	ENST00000443584		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
intron-3CDS	ENST00000583361	ENST00000449996		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
intron-3CDS	ENST00000583361	ENST00000262406		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
intron-intron	ENST00000583361	ENST00000577186		TCGA	RV	BRCA	TCGA-3C-AALI-01A	PRKCA	chr17	64637584	+	RGS9	chr17	63221120	+
In-frame	ENST00000227524	ENST00000301764		TCGA	RV	BRCA	TCGA-A8-A07W-01A	PRPF19	chr11	60668054	-	DDB1	chr11	61091609	-
5CDS-intron	ENST00000227524	ENST00000450997		TCGA	RV	BRCA	TCGA-A8-A07W-01A	PRPF19	chr11	60668054	-	DDB1	chr11	61091609	-
5CDS-intron	ENST00000227524	ENST00000451943		TCGA	RV	BRCA	TCGA-A8-A07W-01A	PRPF19	chr11	60668054	-	DDB1	chr11	61091609	-
5CDS-intron	ENST00000227524	ENST00000538470		TCGA	RV	BRCA	TCGA-A8-A07W-01A	PRPF19	chr11	60668054	-	DDB1	chr11	61091609	-
5CDS-5UTR	ENST00000227524	ENST00000545930		TCGA	RV	BRCA	TCGA-A8-A07W-01A	PRPF19	chr11	60668054	-	DDB1	chr11	61091609	-
Frame-shit	ENST00000445299	ENST00000412723		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
Frame-shit	ENST00000445299	ENST00000443835		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
Frame-shit	ENST00000323460	ENST00000412723		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
Frame-shit	ENST00000323460	ENST00000443835		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
intron-3CDS	ENST00000419026	ENST00000412723		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
intron-3CDS	ENST00000419026	ENST00000443835		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
intron-3CDS	ENST00000489744	ENST00000412723		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
intron-3CDS	ENST00000489744	ENST00000443835		TCGA	RV	BRCA	TCGA-AO-A129-01A	SENP5	chr3	196613565	+	PIGZ	chr3	196678902	-
In-frame	ENST00000493030	ENST00000377424		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000493030	ENST00000536305		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000493030	ENST00000535586		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
5CDS-intron	ENST00000493030	ENST00000377414		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000284551	ENST00000377424		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000284551	ENST00000536305		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000284551	ENST00000535586		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
5CDS-intron	ENST00000284551	ENST00000377414		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
intron-3CDS	ENST00000460651	ENST00000377424		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
intron-3CDS	ENST00000460651	ENST00000536305		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
intron-3CDS	ENST00000460651	ENST00000535586		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
intron-intron	ENST00000460651	ENST00000377414		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000366699	ENST00000377424		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000366699	ENST00000536305		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
In-frame	ENST00000366699	ENST00000535586		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
5CDS-intron	ENST00000366699	ENST00000377414		TCGA	RV	BRCA	TCGA-A8-A09E-01A	TRIM11	chr1	228588665	-	SLC2A5	chr1	9098565	-
Frame-shit	ENST00000367545	ENST00000423192		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
Frame-shit	ENST00000367545	ENST00000367682		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
Frame-shit	ENST00000367545	ENST00000541398		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
5CDS-intron	ENST00000367545	ENST00000495970		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-3CDS	ENST00000367526	ENST00000423192		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-3CDS	ENST00000367526	ENST00000367682		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-3CDS	ENST00000367526	ENST00000541398		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-intron	ENST00000367526	ENST00000495970		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-3CDS	ENST00000480333	ENST00000423192		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-3CDS	ENST00000480333	ENST00000367682		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-3CDS	ENST00000480333	ENST00000541398		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
intron-intron	ENST00000480333	ENST00000495970		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	UTRN	chr6	144898424	+	ECT2L	chr6	139222085	+
Frame-shit	ENST00000343245	ENST00000369046		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
5CDS-intron	ENST00000343245	ENST00000467262		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
5CDS-intron	ENST00000343245	ENST00000369044		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
In-frame	ENST00000369070	ENST00000369046		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
5CDS-intron	ENST00000369070	ENST00000467262		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
5CDS-intron	ENST00000369070	ENST00000369044		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
In-frame	ENST00000369076	ENST00000369046		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
5CDS-intron	ENST00000369076	ENST00000467262		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
5CDS-intron	ENST00000369076	ENST00000369044		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
intron-3CDS	ENST00000360666	ENST00000369046		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
intron-intron	ENST00000360666	ENST00000467262		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
intron-intron	ENST00000360666	ENST00000369044		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
intron-3CDS	ENST00000475645	ENST00000369046		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
intron-intron	ENST00000475645	ENST00000467262		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
intron-intron	ENST00000475645	ENST00000369044		TCGA	RV	BRCA	TCGA-AN-A04C-01A	ATG5	chr6	106727536	-	QRSL1	chr6	107113657	+
In-frame	ENST00000490882	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000490882	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000490882	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000490882	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000490882	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000490882	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000490882	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000490882	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000490882	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000490882	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000429972	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000429972	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000429972	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000429972	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000429972	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000429972	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000429972	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000429972	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000429972	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000429972	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000295956	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000295956	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000295956	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000295956	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000295956	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000295956	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000295956	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000295956	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000295956	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000295956	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000358537	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000358537	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000358537	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000358537	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000358537	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000358537	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000358537	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000358537	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000358537	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000358537	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000357272	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000357272	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000357272	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000357272	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000357272	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000357272	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000357272	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000357272	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000357272	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000357272	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000348383	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000348383	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
In-frame	ENST00000348383	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000348383	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000348383	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-intron	ENST00000348383	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000348383	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000348383	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000348383	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5CDS-3UTR	ENST00000348383	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000493452	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000493452	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000493452	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000493452	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000493452	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000493452	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000493452	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000493452	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000493452	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000493452	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000419752	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000419752	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000419752	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000419752	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000419752	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000419752	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000419752	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000419752	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000419752	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000419752	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000484981	ENST00000295951		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000484981	ENST00000416870		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3CDS	ENST00000484981	ENST00000295952		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000484981	ENST00000383718		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000484981	ENST00000428312		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-intron	ENST00000484981	ENST00000449503		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000484981	ENST00000472546		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000484981	ENST00000442599		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000484981	ENST00000495364		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
intron-3UTR	ENST00000484981	ENST00000494088		TCGA	RV	BRCA	TCGA-A8-A07C-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57898108	+
5UTR-3CDS	ENST00000337338	ENST00000343433		TCGA	RV	BRCA	TCGA-A8-A09G-01A	LRRC8D	chr1	90309341	+	C1orf168	chr1	57233611	-
5UTR-5UTR	ENST00000337338	ENST00000484327		TCGA	RV	BRCA	TCGA-A8-A09G-01A	LRRC8D	chr1	90309341	+	C1orf168	chr1	57233611	-
5UTR-3CDS	ENST00000394593	ENST00000343433		TCGA	RV	BRCA	TCGA-A8-A09G-01A	LRRC8D	chr1	90309341	+	C1orf168	chr1	57233611	-
5UTR-5UTR	ENST00000394593	ENST00000484327		TCGA	RV	BRCA	TCGA-A8-A09G-01A	LRRC8D	chr1	90309341	+	C1orf168	chr1	57233611	-
In-frame	ENST00000545844	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000545844	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000545844	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000545844	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000567887	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000567887	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000567887	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000567887	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000372915	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000372915	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000372915	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000372915	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000361689	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000361689	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000361689	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000361689	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000539005	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000539005	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000539005	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000539005	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000317713	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000317713	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000317713	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000317713	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000564288	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000564288	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000564288	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000564288	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000289893	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000289893	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000289893	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
5CDS-5UTR	ENST00000289893	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000536367	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000536367	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000536367	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-5UTR	ENST00000536367	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000484793	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000484793	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000484793	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-5UTR	ENST00000484793	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000602421	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000602421	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000602421	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-5UTR	ENST00000602421	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000476350	ENST00000396153		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000476350	ENST00000371778		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-3CDS	ENST00000476350	ENST00000545823		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
intron-5UTR	ENST00000476350	ENST00000472808		TCGA	RV	BRCA	TCGA-E2-A10A-01A	MACF1	chr1	39893286	+	FAF1	chr1	51061888	-
In-frame	ENST00000462284	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000462284	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000462284	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000462284	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000356290	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000356290	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000356290	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000356290	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000540827	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000540827	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000540827	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000540827	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000258149	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000258149	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000258149	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000258149	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000428863	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000428863	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000428863	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000428863	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393412	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393412	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393412	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000393412	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000258148	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000258148	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000258148	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000258148	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000544561	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000544561	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000544561	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000544561	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393410	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393410	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393410	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000393410	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393413	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393413	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000393413	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000393413	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000517852	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000517852	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000517852	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000517852	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000545204	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000545204	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000545204	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000545204	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000350057	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000350057	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000350057	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000350057	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000360430	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000360430	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000360430	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000360430	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000299252	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000299252	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000299252	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000299252	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000348801	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000348801	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000348801	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
5CDS-intron	ENST00000348801	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000478070	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000478070	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000478070	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000478070	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000544125	ENST00000229179		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000544125	ENST00000378905		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-3CDS	ENST00000544125	ENST00000539906		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
intron-intron	ENST00000544125	ENST00000401003		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	MDM2	chr12	69229764	+	NUP107	chr12	69113121	+
In-frame	ENST00000357402	ENST00000561482		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000357402	ENST00000160827		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000400750		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000400751		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000569382		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-intron	ENST00000357402	ENST00000563263		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-3CDS	ENST00000452209	ENST00000561482		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-3CDS	ENST00000452209	ENST00000160827		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000400750		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000400751		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000569382		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-intron	ENST00000452209	ENST00000563263		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000395353	ENST00000561482		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000395353	ENST00000160827		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000400750		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000400751		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000569382		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-intron	ENST00000395353	ENST00000563263		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000566554	ENST00000561482		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000566554	ENST00000160827		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000400750		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000400751		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000569382		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-intron	ENST00000566554	ENST00000563263		TCGA	RV	BRCA	TCGA-A7-A3J0-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000310653	ENST00000310614		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000310653	ENST00000535529		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000310653	ENST00000411840		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000310653	ENST00000398483		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000310653	ENST00000542303		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-intron	ENST00000310653	ENST00000314282		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
In-frame	ENST00000336083	ENST00000310614		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000336083	ENST00000535529		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000336083	ENST00000411840		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000336083	ENST00000398483		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000336083	ENST00000542303		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-intron	ENST00000336083	ENST00000314282		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
intron-3CDS	ENST00000536566	ENST00000310614		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000536566	ENST00000535529		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000536566	ENST00000411840		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000536566	ENST00000398483		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
intron-5UTR	ENST00000536566	ENST00000542303		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
intron-intron	ENST00000536566	ENST00000314282		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
In-frame	ENST00000541588	ENST00000310614		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000541588	ENST00000535529		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000541588	ENST00000411840		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000541588	ENST00000398483		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-5UTR	ENST00000541588	ENST00000542303		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
5CDS-intron	ENST00000541588	ENST00000314282		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	RAB6A	chr11	73471611	-	MRPL48	chr11	73516072	+
Frame-shit	ENST00000533211	ENST00000294312		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	SPTBN2	chr11	66453869	-	FGF19	chr11	69514344	-
Frame-shit	ENST00000309996	ENST00000294312		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	SPTBN2	chr11	66453869	-	FGF19	chr11	69514344	-
intron-3CDS	ENST00000529997	ENST00000294312		TCGA	RV	BRCA	TCGA-A2-A3Y0-01A	SPTBN2	chr11	66453869	-	FGF19	chr11	69514344	-
intron-3CDS	ENST00000511642	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
5UTR-3CDS	ENST00000415497	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
5UTR-3CDS	ENST00000372988	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
5UTR-3CDS	ENST00000510503	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
5UTR-3CDS	ENST00000511686	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
intron-3CDS	ENST00000372991	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
intron-3CDS	ENST00000372987	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
intron-3CDS	ENST00000414200	ENST00000230361		TCGA	RV	BRCA	TCGA-AR-A1AI-01A	CCND3	chr6	42016239	-	GUCA1B	chr6	42156469	-
5UTR-3CDS	ENST00000337195	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-3CDS	ENST00000337195	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-intron	ENST00000337195	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-3CDS	ENST00000531469	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-3CDS	ENST00000531469	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-intron	ENST00000531469	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000494626	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000494626	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000494626	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-3CDS	ENST00000411419	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-3CDS	ENST00000411419	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
5UTR-intron	ENST00000411419	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000476817	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000476817	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000476817	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000309035	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000309035	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000309035	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000334808	ENST00000368679		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000334808	ENST00000368676		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000334808	ENST00000467145		TCGA	RV	BRCA	TCGA-A8-A08L-01A	CTBP2	chr10	126799559	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000535924	ENST00000431532		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000535924	ENST00000370574		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000483110	ENST00000431532		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000483110	ENST00000370574		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
Frame-shit	ENST00000284031	ENST00000431532		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
Frame-shit	ENST00000284031	ENST00000370574		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
Frame-shit	ENST00000539042	ENST00000431532		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
Frame-shit	ENST00000539042	ENST00000370574		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000426972	ENST00000431532		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000426972	ENST00000370574		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000542148	ENST00000431532		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
intron-3CDS	ENST00000542148	ENST00000370574		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	DDAH1	chr1	85930426	-	ZNHIT6	chr1	86119781	-
5UTR-3CDS	ENST00000315127	ENST00000566228		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000315127	ENST00000323433		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000315127	ENST00000306030		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-intron	ENST00000315127	ENST00000568359		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000426797	ENST00000566228		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000426797	ENST00000323433		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000426797	ENST00000306030		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-intron	ENST00000426797	ENST00000568359		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000568176	ENST00000566228		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000568176	ENST00000323433		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-3CDS	ENST00000568176	ENST00000306030		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
5UTR-intron	ENST00000568176	ENST00000568359		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
intron-3CDS	ENST00000562047	ENST00000566228		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
intron-3CDS	ENST00000562047	ENST00000323433		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
intron-3CDS	ENST00000562047	ENST00000306030		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
intron-intron	ENST00000562047	ENST00000568359		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	EDC3	chr15	74988221	-	SNX29	chr16	12293458	+
In-frame	ENST00000253861	ENST00000265631		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000253861	ENST00000416240		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000253861	ENST00000542654		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
5CDS-intron	ENST00000253861	ENST00000494085		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000539845	ENST00000265631		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000539845	ENST00000416240		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000539845	ENST00000542654		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
5CDS-intron	ENST00000539845	ENST00000494085		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000393161	ENST00000265631		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000393161	ENST00000416240		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000393161	ENST00000542654		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
5CDS-intron	ENST00000393161	ENST00000494085		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000545148	ENST00000265631		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000545148	ENST00000416240		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000545148	ENST00000542654		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-intron	ENST00000545148	ENST00000494085		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000460346	ENST00000265631		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000460346	ENST00000416240		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000460346	ENST00000542654		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-intron	ENST00000460346	ENST00000494085		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000541309	ENST00000265631		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000541309	ENST00000416240		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-3CDS	ENST00000541309	ENST00000542654		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
intron-intron	ENST00000541309	ENST00000494085		TCGA	RV	BRCA	TCGA-AR-A256-01A	EXOC4	chr7	133059756	+	SLC25A13	chr7	95776008	-
Frame-shit	ENST00000354570	ENST00000454859		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000354570	ENST00000474289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000528402		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000454591		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000368291		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000309620		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000430841		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000368289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000354570	ENST00000531967		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000354570	ENST00000488087		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000454590	ENST00000454859		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000454590	ENST00000474289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000528402		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000454591		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000368291		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000309620		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000430841		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000368289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000454590	ENST00000531967		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000454590	ENST00000488087		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000544465	ENST00000454859		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000544465	ENST00000474289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000528402		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000454591		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000368291		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000309620		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000430841		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000368289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000544465	ENST00000531967		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000544465	ENST00000488087		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000438100	ENST00000454859		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000438100	ENST00000474289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000528402		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000454591		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000368291		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000309620		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000430841		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000368289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000438100	ENST00000531967		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000438100	ENST00000488087		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000432797	ENST00000454859		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000432797	ENST00000474289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000528402		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000454591		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000368291		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000309620		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000430841		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000368289		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000432797	ENST00000531967		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000432797	ENST00000488087		TCGA	RV	BRCA	TCGA-A2-A04V-01A	MAP7	chr6	136871480	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000253925	ENST00000304271		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
Frame-shit	ENST00000253925	ENST00000533310		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
5CDS-5UTR	ENST00000253925	ENST00000530166		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
Frame-shit	ENST00000389547	ENST00000304271		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
Frame-shit	ENST00000389547	ENST00000533310		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
5CDS-5UTR	ENST00000389547	ENST00000530166		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
intron-3CDS	ENST00000530548	ENST00000304271		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
intron-3CDS	ENST00000530548	ENST00000533310		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
intron-5UTR	ENST00000530548	ENST00000530166		TCGA	RV	BRCA	TCGA-AR-A24V-01A	PPFIA1	chr11	70118542	+	C11orf24	chr11	68030386	-
Frame-shit	ENST00000260045	ENST00000355303		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
Frame-shit	ENST00000260045	ENST00000398543		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
Frame-shit	ENST00000260045	ENST00000538023		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
5CDS-intron	ENST00000260045	ENST00000316296		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
5CDS-intron	ENST00000260045	ENST00000530676		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
5CDS-intron	ENST00000260045	ENST00000531349		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
5CDS-3UTR	ENST00000260045	ENST00000525494		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-3CDS	ENST00000531878	ENST00000355303		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-3CDS	ENST00000531878	ENST00000398543		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-3CDS	ENST00000531878	ENST00000538023		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-intron	ENST00000531878	ENST00000316296		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-intron	ENST00000531878	ENST00000530676		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-intron	ENST00000531878	ENST00000531349		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
intron-3UTR	ENST00000531878	ENST00000525494		TCGA	RV	BRCA	TCGA-5T-A9QA-01A	PRKRIR	chr11	76091792	-	ANO1	chr11	70016993	+
5UTR-3CDS	ENST00000371828	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371828	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371828	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371828	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371828	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371802	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371802	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371802	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371802	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371802	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371856	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371856	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371856	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371856	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000371856	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000347458	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000347458	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000347458	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000347458	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000347458	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000340954	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000340954	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000340954	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000340954	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000340954	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371792	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371792	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371792	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371792	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000371792	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000360426	ENST00000307422		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000360426	ENST00000253099		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000360426	ENST00000590669		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000360426	ENST00000393733		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5UTR-3CDS	ENST00000360426	ENST00000588502		TCGA	RV	BRCA	TCGA-AR-A1AO-01A	STAU1	chr20	47790732	-	MRPL4	chr19	10363073	+
5CDS-5UTR	ENST00000355957	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000355957	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000355957	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000361770	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000361770	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000361770	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5UTR-5UTR	ENST00000359617	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5UTR-5UTR	ENST00000359617	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5UTR-5UTR	ENST00000359617	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000371141	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000371141	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000371141	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000371132	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000371132	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000371132	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
3UTR-5UTR	ENST00000496003	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
3UTR-5UTR	ENST00000496003	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
3UTR-5UTR	ENST00000496003	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000358029	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000358029	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000358029	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000361830	ENST00000360149		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000361830	ENST00000536311		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5CDS-5UTR	ENST00000361830	ENST00000328439		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	STX16	chr20	57227143	+	MYT1	chr20	62821416	+
5UTR-3CDS	ENST00000355327	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
5UTR-3CDS	ENST00000355327	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
5UTR-3CDS	ENST00000355327	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
5UTR-3CDS	ENST00000355327	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
5UTR-5UTR	ENST00000355327	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
5UTR-3UTR	ENST00000355327	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
5UTR-intron	ENST00000355327	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000261862	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000261862	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000261862	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000261862	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-5UTR	ENST00000261862	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3UTR	ENST00000261862	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-intron	ENST00000261862	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-5UTR	ENST00000357769	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3UTR	ENST00000357769	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-intron	ENST00000357769	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000544974		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000560369		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000260382		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000443425		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-5UTR	ENST00000567838	ENST00000560691		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-3UTR	ENST00000567838	ENST00000436542		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
intron-intron	ENST00000567838	ENST00000560158		TCGA	RV	BRCA	TCGA-A2-A4S3-01A	THSD4	chr15	71389345	+	LRRC49	chr15	71256124	+
In-frame	ENST00000261965	ENST00000595437		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
In-frame	ENST00000261965	ENST00000376586		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
In-frame	ENST00000261965	ENST00000319562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5CDS-intron	ENST00000261965	ENST00000376581		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5CDS-intron	ENST00000261965	ENST00000593990		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
In-frame	ENST00000375669	ENST00000595437		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
In-frame	ENST00000375669	ENST00000376586		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
In-frame	ENST00000375669	ENST00000319562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5CDS-intron	ENST00000375669	ENST00000376581		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5CDS-intron	ENST00000375669	ENST00000593990		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5UTR-3CDS	ENST00000462580	ENST00000595437		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5UTR-3CDS	ENST00000462580	ENST00000376586		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5UTR-3CDS	ENST00000462580	ENST00000319562		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5UTR-intron	ENST00000462580	ENST00000376581		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
5UTR-intron	ENST00000462580	ENST00000593990		TCGA	RV	BRCA	TCGA-GM-A2DF-01A	TUBGCP3	chr13	113200013	-	FARP1	chr13	99098352	+
In-frame	ENST00000367800	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000367800	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000367800	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-3UTR	ENST00000367800	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-intron	ENST00000367800	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-intron	ENST00000367800	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000457866	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000457866	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000457866	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000457866	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000457866	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000457866	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000457866	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000457866	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000457866	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-3UTR	ENST00000457866	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-intron	ENST00000457866	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-intron	ENST00000457866	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000417892	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
In-frame	ENST00000417892	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
Frame-shit	ENST00000417892	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-3UTR	ENST00000417892	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-intron	ENST00000417892	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5CDS-intron	ENST00000417892	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000327035	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3UTR	ENST00000327035	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000327035	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000327035	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000488690	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3UTR	ENST00000488690	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000488690	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000488690	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000367798	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3UTR	ENST00000367798	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000367798	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000367798	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000528103	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3UTR	ENST00000528103	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000528103	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000528103	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000534469	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3UTR	ENST00000534469	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000534469	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000534469	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000341911		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000316528		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000442647		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000367814		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000525369		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000534121		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000533624		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000534044		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3CDS	ENST00000531527	ENST00000528774		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-3UTR	ENST00000531527	ENST00000531845		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000531527	ENST00000527615		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
intron-intron	ENST00000531527	ENST00000420123		TCGA	RV	BRCA	TCGA-A2-A3XS-01A	AHI1	chr6	135679270	-	MYB	chr6	135539002	+
5UTR-3UTR	ENST00000383440	ENST00000593699		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
5UTR-3UTR	ENST00000383440	ENST00000372499		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
5UTR-intron	ENST00000383440	ENST00000496424		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
5UTR-3UTR	ENST00000262126	ENST00000593699		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
5UTR-3UTR	ENST00000262126	ENST00000372499		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
5UTR-intron	ENST00000262126	ENST00000496424		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
3UTR-3UTR	ENST00000540578	ENST00000593699		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
3UTR-3UTR	ENST00000540578	ENST00000372499		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
3UTR-intron	ENST00000540578	ENST00000496424		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
intron-3UTR	ENST00000400020	ENST00000593699		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
intron-3UTR	ENST00000400020	ENST00000372499		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
intron-intron	ENST00000400020	ENST00000496424		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ANKRD12	chr18	9136963	+	C10orf11	chr10	77818424	+
intron-3CDS	ENST00000520381	ENST00000297769		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-3CDS	ENST00000520381	ENST00000297770		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-intron	ENST00000520381	ENST00000518549		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
Frame-shit	ENST00000262215	ENST00000297769		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
Frame-shit	ENST00000262215	ENST00000297770		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
5CDS-intron	ENST00000262215	ENST00000518549		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-3CDS	ENST00000517955	ENST00000297769		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-3CDS	ENST00000517955	ENST00000297770		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-intron	ENST00000517955	ENST00000518549		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-3CDS	ENST00000518230	ENST00000297769		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-3CDS	ENST00000518230	ENST00000297770		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-intron	ENST00000518230	ENST00000518549		TCGA	RV	BRCA	TCGA-E2-A14Y-01A	ARFGEF1	chr8	68255399	-	CPA6	chr8	68334926	-
intron-3CDS	ENST00000550385	ENST00000547405		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000550385	ENST00000452455		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000550385	ENST00000360610		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000550385	ENST00000441232		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000550385	ENST00000392934		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000550385	ENST00000547509		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000550385	ENST00000361685		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000550501		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000549145		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000553190		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000536007		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000541119		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000545503		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000361466		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000551300		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-intron	ENST00000550385	ENST00000550270		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000547405		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000452455		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000360610		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000441232		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000392934		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000547509		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000229266	ENST00000361685		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000550501		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000549145		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000553190		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000536007		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000541119		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000545503		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000361466		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000551300		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000229266	ENST00000550270		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000547405		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000452455		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000360610		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000441232		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000392934		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000547509		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000549872	ENST00000361685		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000550501		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000549145		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000553190		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000536007		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000541119		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000545503		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000361466		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000551300		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000549872	ENST00000550270		TCGA	RV	BRCA	TCGA-A7-A6VY-01A	CHPT1	chr12	102091912	+	MYBPC1	chr12	102061510	+
intron-5UTR	ENST00000529225	ENST00000340149		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
intron-5UTR	ENST00000529225	ENST00000361507		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
intron-5UTR	ENST00000529225	ENST00000526030		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000440460	ENST00000340149		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000440460	ENST00000361507		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000440460	ENST00000526030		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
3UTR-5UTR	ENST00000389821	ENST00000340149		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
3UTR-5UTR	ENST00000389821	ENST00000361507		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
3UTR-5UTR	ENST00000389821	ENST00000526030		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000531396	ENST00000340149		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000531396	ENST00000361507		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000531396	ENST00000526030		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
intron-5UTR	ENST00000315253	ENST00000340149		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
intron-5UTR	ENST00000315253	ENST00000361507		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
intron-5UTR	ENST00000315253	ENST00000526030		TCGA	RV	BRCA	TCGA-A1-A0SO-01A	DIXDC1	chr11	111808283	+	GAB2	chr11	77991947	-
In-frame	ENST00000373203	ENST00000373176		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000373203	ENST00000373156		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000373203	ENST00000223836		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000344849	ENST00000373176		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000344849	ENST00000373156		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000344849	ENST00000223836		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
intron-3CDS	ENST00000480266	ENST00000373176		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
intron-3CDS	ENST00000480266	ENST00000373156		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
intron-3CDS	ENST00000480266	ENST00000223836		TCGA	RV	BRCA	TCGA-B6-A0I6-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
5CDS-5UTR	ENST00000231368	ENST00000338252		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000508830		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000359176		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000395812		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000325674		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000395813		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000510756		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000231368	ENST00000508608		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000341926		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000511049		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000309190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000509903		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000511782		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000504465		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000348386		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000508579		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000231368	ENST00000515663		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000338252		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000508830		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000359176		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000395812		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000325674		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000395813		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000510756		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000395770	ENST00000508608		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000341926		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000511049		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000309190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000509903		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000511782		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000504465		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000348386		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000508579		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
intron-intron	ENST00000395770	ENST00000515663		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000338252		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000508830		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000359176		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000395812		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000325674		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000395813		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000510756		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-5UTR	ENST00000395784	ENST00000508608		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000341926		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000511049		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000309190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000509903		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000511782		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000504465		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000348386		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000508579		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
3UTR-intron	ENST00000395784	ENST00000515663		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LNPEP	chr5	96271878	+	CAST	chr5	96011243	+
In-frame	ENST00000310614	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	RV	BRCA	TCGA-A8-A093-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-5UTR	ENST00000274747	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000274747	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000274747	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000274747	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000274747	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000274747	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000543597	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000543597	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000543597	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000543597	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000543597	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5UTR-intron	ENST00000543597	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000535061	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000535061	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000535061	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000535061	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000535061	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000535061	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
3UTR-5UTR	ENST00000483634	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
3UTR-5UTR	ENST00000483634	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
3UTR-5UTR	ENST00000483634	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
3UTR-5UTR	ENST00000483634	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
3UTR-5UTR	ENST00000483634	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
3UTR-intron	ENST00000483634	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378353	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378353	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378353	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378353	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378353	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000378353	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378386	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378386	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378386	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378386	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000378386	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000378386	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000443868	ENST00000259698		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000443868	ENST00000538035		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000443868	ENST00000510784		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000443868	ENST00000378023		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000443868	ENST00000540914		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000443868	ENST00000473070		TCGA	RV	BRCA	TCGA-E2-A1II-01A	MRS2	chr6	24403464	+	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000269554	ENST00000301665		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PIP4K2B	chr17	36933940	-	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000269554	ENST00000496847		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PIP4K2B	chr17	36933940	-	TMEM99	chr17	38989367	+
5UTR-5UTR	ENST00000311500	ENST00000301665		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PIP4K2B	chr17	36933940	-	TMEM99	chr17	38989367	+
5UTR-intron	ENST00000311500	ENST00000496847		TCGA	RV	BRCA	TCGA-C8-A26W-01A	PIP4K2B	chr17	36933940	-	TMEM99	chr17	38989367	+
Frame-shit	ENST00000361204	ENST00000288670		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	SREBF2	chr22	42290941	+	FMNL2	chr2	153463853	+
5CDS-intron	ENST00000361204	ENST00000475377		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	SREBF2	chr22	42290941	+	FMNL2	chr2	153463853	+
5CDS-intron	ENST00000361204	ENST00000497192		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	SREBF2	chr22	42290941	+	FMNL2	chr2	153463853	+
3UTR-3CDS	ENST00000491541	ENST00000288670		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	SREBF2	chr22	42290941	+	FMNL2	chr2	153463853	+
3UTR-intron	ENST00000491541	ENST00000475377		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	SREBF2	chr22	42290941	+	FMNL2	chr2	153463853	+
3UTR-intron	ENST00000491541	ENST00000497192		TCGA	RV	BRCA	TCGA-C8-A26Y-01A	SREBF2	chr22	42290941	+	FMNL2	chr2	153463853	+
5UTR-3CDS	ENST00000457913	ENST00000376980		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
5UTR-intron	ENST00000457913	ENST00000376946		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
5UTR-5UTR	ENST00000457913	ENST00000483085		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
5UTR-3CDS	ENST00000277225	ENST00000376980		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
5UTR-intron	ENST00000277225	ENST00000376946		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
5UTR-5UTR	ENST00000277225	ENST00000483085		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-3CDS	ENST00000441147	ENST00000376980		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-intron	ENST00000441147	ENST00000376946		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000441147	ENST00000483085		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-3CDS	ENST00000542028	ENST00000376980		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-intron	ENST00000542028	ENST00000376946		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000542028	ENST00000483085		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-3CDS	ENST00000497489	ENST00000376980		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-intron	ENST00000497489	ENST00000376946		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000497489	ENST00000483085		TCGA	RV	BRCA	TCGA-A2-A04T-01A	ZNF462	chr9	109625636	+	DNAJC1	chr10	22095028	-
5CDS-intron	ENST00000338110	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000322776		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000532303		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000529927		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000415352		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000526169		TCGA	RV	BRCA	TCGA-A2-A0CK-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
In-frame	ENST00000262982	ENST00000371917		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
5CDS-intron	ENST00000262982	ENST00000493140		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
In-frame	ENST00000542325	ENST00000371917		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
5CDS-intron	ENST00000542325	ENST00000493140		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
In-frame	ENST00000396192	ENST00000371917		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
5CDS-intron	ENST00000396192	ENST00000493140		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
3UTR-3CDS	ENST00000469700	ENST00000371917		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
3UTR-intron	ENST00000469700	ENST00000493140		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	CSE1L	chr20	47711500	+	ARFGEF2	chr20	47641850	+
In-frame	ENST00000276533	ENST00000268379		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000276533	ENST00000561553		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000520710	ENST00000268379		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000520710	ENST00000561553		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000518671	ENST00000268379		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000518671	ENST00000561553		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000523277	ENST00000268379		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000523277	ENST00000561553		TCGA	RV	BRCA	TCGA-E9-A54Y-01A	GINS4	chr8	41387817	+	UQCRC2	chr16	21994409	+
In-frame	ENST00000253925	ENST00000300190		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	PPFIA1	chr11	70222706	+	MS4A5	chr11	60215122	+
5CDS-intron	ENST00000253925	ENST00000534071		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	PPFIA1	chr11	70222706	+	MS4A5	chr11	60215122	+
In-frame	ENST00000389547	ENST00000300190		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	PPFIA1	chr11	70222706	+	MS4A5	chr11	60215122	+
5CDS-intron	ENST00000389547	ENST00000534071		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	PPFIA1	chr11	70222706	+	MS4A5	chr11	60215122	+
3UTR-3CDS	ENST00000530548	ENST00000300190		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	PPFIA1	chr11	70222706	+	MS4A5	chr11	60215122	+
3UTR-intron	ENST00000530548	ENST00000534071		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	PPFIA1	chr11	70222706	+	MS4A5	chr11	60215122	+
5UTR-3CDS	ENST00000260970	ENST00000280527		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-intron	ENST00000260970	ENST00000473403		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-3CDS	ENST00000409714	ENST00000280527		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-intron	ENST00000409714	ENST00000473403		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-3CDS	ENST00000462903	ENST00000280527		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-intron	ENST00000462903	ENST00000473403		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-3CDS	ENST00000448752	ENST00000280527		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
5UTR-intron	ENST00000448752	ENST00000473403		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
intron-3CDS	ENST00000482772	ENST00000280527		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
intron-intron	ENST00000482772	ENST00000473403		TCGA	RV	BRCA	TCGA-B6-A0RI-01A	PPIG	chr2	170441000	+	CRIM1	chr2	36726362	+
In-frame	ENST00000325954	ENST00000455385		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
In-frame	ENST00000325954	ENST00000011473		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
In-frame	ENST00000325954	ENST00000470347		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
In-frame	ENST00000413266	ENST00000455385		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
In-frame	ENST00000413266	ENST00000011473		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
In-frame	ENST00000413266	ENST00000470347		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
intron-3CDS	ENST00000542701	ENST00000455385		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
intron-3CDS	ENST00000542701	ENST00000011473		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
intron-3CDS	ENST00000542701	ENST00000470347		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	RNF10	chr12	120998689	+	SYPL1	chr7	105739728	-
5CDS-5UTR	ENST00000300030	ENST00000560829		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000300030	ENST00000353874		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000300030	ENST00000261889		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000300030	ENST00000559844		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000300030	ENST00000561026		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-intron	ENST00000300030	ENST00000559339		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000558779	ENST00000560829		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000558779	ENST00000353874		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000558779	ENST00000261889		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000558779	ENST00000559844		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000558779	ENST00000561026		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
intron-intron	ENST00000558779	ENST00000559339		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000380290	ENST00000560829		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000380290	ENST00000353874		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000380290	ENST00000261889		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000380290	ENST00000559844		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000380290	ENST00000561026		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-intron	ENST00000380290	ENST00000559339		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000557835	ENST00000560829		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000557835	ENST00000353874		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000557835	ENST00000261889		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000557835	ENST00000559844		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000557835	ENST00000561026		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-intron	ENST00000557835	ENST00000559339		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000559950	ENST00000560829		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000559950	ENST00000353874		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000559950	ENST00000261889		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000559950	ENST00000559844		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000559950	ENST00000561026		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5CDS-intron	ENST00000559950	ENST00000559339		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	FAM96A	chr15	64380886	-	SNX1	chr15	64404772	+
5UTR-3UTR	ENST00000318789	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-intron	ENST00000318789	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-3UTR	ENST00000475937	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-intron	ENST00000475937	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-3UTR	ENST00000493089	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-intron	ENST00000493089	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-3UTR	ENST00000484350	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-intron	ENST00000484350	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-3UTR	ENST00000318779	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-intron	ENST00000318779	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-3UTR	ENST00000491238	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-intron	ENST00000491238	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-3UTR	ENST00000498215	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-intron	ENST00000498215	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-3UTR	ENST00000468577	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-intron	ENST00000468577	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-3UTR	ENST00000472382	ENST00000545866		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
intron-intron	ENST00000472382	ENST00000609883		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	FOXP1	chr3	71542577	-	RGAG4	chrX	71347560	-
5UTR-3CDS	ENST00000300605	ENST00000502492		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	HDHD2	chr18	44676749	-	SNF8	chr17	47014486	-
5UTR-3CDS	ENST00000300605	ENST00000290330		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	HDHD2	chr18	44676749	-	SNF8	chr17	47014486	-
5UTR-3CDS	ENST00000300605	ENST00000514089		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	HDHD2	chr18	44676749	-	SNF8	chr17	47014486	-
5UTR-3CDS	ENST00000587841	ENST00000502492		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	HDHD2	chr18	44676749	-	SNF8	chr17	47014486	-
5UTR-3CDS	ENST00000587841	ENST00000290330		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	HDHD2	chr18	44676749	-	SNF8	chr17	47014486	-
5UTR-3CDS	ENST00000587841	ENST00000514089		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	HDHD2	chr18	44676749	-	SNF8	chr17	47014486	-
In-frame	ENST00000528157	ENST00000409792		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MANF	chr3	51423766	+	SETD2	chr3	47108608	-
5CDS-5UTR	ENST00000528157	ENST00000492397		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MANF	chr3	51423766	+	SETD2	chr3	47108608	-
3UTR-3CDS	ENST00000470900	ENST00000409792		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MANF	chr3	51423766	+	SETD2	chr3	47108608	-
3UTR-5UTR	ENST00000470900	ENST00000492397		TCGA	RV	BRCA	TCGA-A2-A3KC-01A	MANF	chr3	51423766	+	SETD2	chr3	47108608	-
Frame-shit	ENST00000344191	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000344191	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000344191	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000344191	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000344191	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000344191	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000351017	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000351017	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000351017	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000351017	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000351017	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000351017	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392108	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392108	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392108	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392108	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392108	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000392108	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392112	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392112	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392112	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392112	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000392112	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000392112	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000366806	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000366806	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000366806	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000366806	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000366806	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000366806	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000447894	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000447894	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000447894	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000447894	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000447894	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000447894	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000400822	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000400822	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000400822	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000400822	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
Frame-shit	ENST00000400822	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
5CDS-3UTR	ENST00000400822	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
intron-3CDS	ENST00000507679	ENST00000490337		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
intron-3CDS	ENST00000507679	ENST00000389636		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
intron-3CDS	ENST00000507679	ENST00000471742		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
intron-3CDS	ENST00000507679	ENST00000302490		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
intron-3CDS	ENST00000507679	ENST00000389634		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
intron-3UTR	ENST00000507679	ENST00000497291		TCGA	RV	BRCA	TCGA-HN-A2NL-01A	MLLT4	chr6	168227917	+	KCNAB1	chr3	156232153	+
In-frame	ENST00000301761	ENST00000311320		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
In-frame	ENST00000301761	ENST00000424433		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
In-frame	ENST00000301761	ENST00000530056		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000301761	ENST00000524804		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-3CDS	ENST00000542074	ENST00000311320		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-3CDS	ENST00000542074	ENST00000424433		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-3CDS	ENST00000542074	ENST00000530056		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-intron	ENST00000542074	ENST00000524804		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
In-frame	ENST00000537782	ENST00000311320		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
In-frame	ENST00000537782	ENST00000424433		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
In-frame	ENST00000537782	ENST00000530056		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000537782	ENST00000524804		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-3CDS	ENST00000543265	ENST00000311320		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-3CDS	ENST00000543265	ENST00000424433		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-3CDS	ENST00000543265	ENST00000530056		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
intron-intron	ENST00000543265	ENST00000524804		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000534878	ENST00000311320		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000534878	ENST00000424433		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000534878	ENST00000530056		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000534878	ENST00000524804		TCGA	RV	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61205585	+	RIN1	chr11	66101129	-
5CDS-5UTR	ENST00000359930	ENST00000340149		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000359930	ENST00000361507		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000359930	ENST00000526030		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000484875	ENST00000340149		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000484875	ENST00000361507		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000484875	ENST00000526030		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000361612	ENST00000340149		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000361612	ENST00000361507		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000361612	ENST00000526030		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000467815	ENST00000340149		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000467815	ENST00000361507		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000467815	ENST00000526030		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000478766	ENST00000340149		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000478766	ENST00000361507		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000478766	ENST00000526030		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	SULF2	chr20	46385933	-	GAB2	chr11	77991947	-
In-frame	ENST00000366661	ENST00000539801		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000366661	ENST00000381652		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000366661	ENST00000544510		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
5CDS-intron	ENST00000366661	ENST00000487310		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000366662	ENST00000539801		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000366662	ENST00000381652		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000366662	ENST00000544510		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
5CDS-intron	ENST00000366662	ENST00000487310		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000414259	ENST00000539801		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000414259	ENST00000381652		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000414259	ENST00000544510		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
5CDS-intron	ENST00000414259	ENST00000487310		TCGA	RV	BRCA	TCGA-E9-A22D-01A	TTC13	chr1	231075132	-	JAK2	chr9	5064883	+
In-frame	ENST00000357103	ENST00000162391		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ADIPOR2	chr12	1863680	+	FOXJ2	chr12	8197356	+
In-frame	ENST00000357103	ENST00000428177		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ADIPOR2	chr12	1863680	+	FOXJ2	chr12	8197356	+
5CDS-intron	ENST00000357103	ENST00000539192		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ADIPOR2	chr12	1863680	+	FOXJ2	chr12	8197356	+
intron-3CDS	ENST00000544470	ENST00000162391		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ADIPOR2	chr12	1863680	+	FOXJ2	chr12	8197356	+
intron-3CDS	ENST00000544470	ENST00000428177		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ADIPOR2	chr12	1863680	+	FOXJ2	chr12	8197356	+
intron-intron	ENST00000544470	ENST00000539192		TCGA	RV	BRCA	TCGA-E2-A1LL-01A	ADIPOR2	chr12	1863680	+	FOXJ2	chr12	8197356	+
In-frame	ENST00000372852	ENST00000372748		TCGA	RV	BRCA	TCGA-E2-A15E-06A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
5CDS-intron	ENST00000372852	ENST00000466267		TCGA	RV	BRCA	TCGA-E2-A15E-06A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
intron-3CDS	ENST00000535435	ENST00000372748		TCGA	RV	BRCA	TCGA-E2-A15E-06A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
intron-intron	ENST00000535435	ENST00000466267		TCGA	RV	BRCA	TCGA-E2-A15E-06A	HEYL	chr1	40105218	-	COL9A2	chr1	40777387	-
In-frame	ENST00000366882	ENST00000262193		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
5CDS-5UTR	ENST00000366882	ENST00000462957		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
In-frame	ENST00000354448	ENST00000262193		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
5CDS-5UTR	ENST00000354448	ENST00000462957		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
In-frame	ENST00000539869	ENST00000262193		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
5CDS-5UTR	ENST00000539869	ENST00000462957		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
intron-3CDS	ENST00000535229	ENST00000262193		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
intron-5UTR	ENST00000535229	ENST00000462957		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PDE10A	chr6	165956928	-	PSMB1	chr6	170846428	-
Frame-shit	ENST00000247020	ENST00000590474		TCGA	RV	BRCA	TCGA-E9-A22D-01A	SDF2	chr17	26982305	-	MAP2K6	chr17	67532256	+
Frame-shit	ENST00000247020	ENST00000589647		TCGA	RV	BRCA	TCGA-E9-A22D-01A	SDF2	chr17	26982305	-	MAP2K6	chr17	67532256	+
5UTR-3CDS	ENST00000592250	ENST00000590474		TCGA	RV	BRCA	TCGA-E9-A22D-01A	SDF2	chr17	26982305	-	MAP2K6	chr17	67532256	+
5UTR-3CDS	ENST00000592250	ENST00000589647		TCGA	RV	BRCA	TCGA-E9-A22D-01A	SDF2	chr17	26982305	-	MAP2K6	chr17	67532256	+
In-frame	ENST00000269886	ENST00000543117		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000269886	ENST00000265393		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000269886	ENST00000409980		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000269886	ENST00000433216		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000269886	ENST00000396319		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
5CDS-intron	ENST00000269886	ENST00000494033		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000598564	ENST00000543117		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000598564	ENST00000265393		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000598564	ENST00000409980		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000598564	ENST00000433216		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000598564	ENST00000396319		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
5CDS-intron	ENST00000598564	ENST00000494033		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000417295	ENST00000543117		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000417295	ENST00000265393		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000417295	ENST00000409980		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000417295	ENST00000433216		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
In-frame	ENST00000417295	ENST00000396319		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
5CDS-intron	ENST00000417295	ENST00000494033		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SH3GL1	chr19	4400321	-	TAX1BP1	chr7	27867357	+
3UTR-3CDS	ENST00000376929	ENST00000308724		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000376929	ENST00000397120		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000376929	ENST00000556277		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000506690	ENST00000308724		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000506690	ENST00000397120		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000506690	ENST00000556277		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
3UTR-3CDS	ENST00000389805	ENST00000308724		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000389805	ENST00000397120		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000389805	ENST00000556277		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000402874	ENST00000308724		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000402874	ENST00000397120		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000402874	ENST00000556277		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000510187	ENST00000308724		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000510187	ENST00000397120		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000510187	ENST00000556277		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000360718	ENST00000308724		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000360718	ENST00000397120		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000360718	ENST00000556277		TCGA	RV	BRCA	TCGA-AR-A5QM-01A	SQSTM1	chr5	179264252	+	AP1G2	chr14	24037279	-
In-frame	ENST00000442267	ENST00000261401		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141591874	-	CORO1C	chr12	109072170	-
In-frame	ENST00000442267	ENST00000541050		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141591874	-	CORO1C	chr12	109072170	-
5CDS-intron	ENST00000442267	ENST00000549384		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141591874	-	CORO1C	chr12	109072170	-
5CDS-5UTR	ENST00000442267	ENST00000421578		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141591874	-	CORO1C	chr12	109072170	-
5CDS-5UTR	ENST00000442267	ENST00000420959		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141591874	-	CORO1C	chr12	109072170	-
5CDS-5UTR	ENST00000442267	ENST00000549772		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	TBC1D9	chr4	141591874	-	CORO1C	chr12	109072170	-
5CDS-intron	ENST00000340353	ENST00000438015		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000340353	ENST00000427383		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-3UTR	ENST00000340353	ENST00000428830		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000340353	ENST00000532449		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000340353	ENST00000544373		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000340353	ENST00000534070		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000340353	ENST00000524737		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000340353	ENST00000278916		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000438015		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000427383		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-3UTR	ENST00000532959	ENST00000428830		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000532449		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000544373		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000534070		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000524737		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000532959	ENST00000278916		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000438015		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000427383		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-3UTR	ENST00000305494	ENST00000428830		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000532449		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000544373		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000534070		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000524737		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000305494	ENST00000278916		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000438015		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000427383		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-3UTR	ENST00000535167	ENST00000428830		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000532449		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000544373		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000534070		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000524737		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
intron-intron	ENST00000535167	ENST00000278916		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000438015		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000427383		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-3UTR	ENST00000355734	ENST00000428830		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000532449		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000544373		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000534070		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000524737		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
5CDS-intron	ENST00000355734	ENST00000278916		TCGA	RV	BRCA	TCGA-OL-A66P-01A	TMEM135	chr11	86802437	+	CHEK1	chr11	125545823	+
Frame-shit	ENST00000316059	ENST00000310653		TCGA	RV	BRCA	TCGA-A8-A07P-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000336083		TCGA	RV	BRCA	TCGA-A8-A07P-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000536566		TCGA	RV	BRCA	TCGA-A8-A07P-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000541588		TCGA	RV	BRCA	TCGA-A8-A07P-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000335793	ENST00000392650		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-3CDS	ENST00000335793	ENST00000388726		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-5UTR	ENST00000335793	ENST00000410094		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-3CDS	ENST00000439510	ENST00000392650		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-3CDS	ENST00000439510	ENST00000388726		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-5UTR	ENST00000439510	ENST00000410094		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-3CDS	ENST00000581014	ENST00000392650		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-3CDS	ENST00000581014	ENST00000388726		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
5UTR-5UTR	ENST00000581014	ENST00000410094		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
intron-3CDS	ENST00000582303	ENST00000392650		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
intron-3CDS	ENST00000582303	ENST00000388726		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
intron-5UTR	ENST00000582303	ENST00000410094		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71361534	-
Frame-shit	ENST00000298912	ENST00000402714		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
Frame-shit	ENST00000298912	ENST00000544450		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
Frame-shit	ENST00000298912	ENST00000392920		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
5CDS-3UTR	ENST00000298912	ENST00000555048		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3CDS	ENST00000557215	ENST00000402714		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3CDS	ENST00000557215	ENST00000544450		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3CDS	ENST00000557215	ENST00000392920		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3UTR	ENST00000557215	ENST00000555048		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3CDS	ENST00000556441	ENST00000402714		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3CDS	ENST00000556441	ENST00000544450		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3CDS	ENST00000556441	ENST00000392920		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
intron-3UTR	ENST00000556441	ENST00000555048		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	CLMN	chr14	95786048	-	EVL	chr14	100551024	+
In-frame	ENST00000280333	ENST00000398250		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000280333	ENST00000439221		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000280333	ENST00000398248		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000280333	ENST00000541332		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000280333	ENST00000369073		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000280333	ENST00000496437		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000484400	ENST00000398250		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000484400	ENST00000439221		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000484400	ENST00000398248		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000484400	ENST00000541332		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000484400	ENST00000369073		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000484400	ENST00000496437		TCGA	RV	BRCA	TCGA-A2-A04U-01A	DOCK1	chr10	128796513	+	PPAPDC1A	chr10	122263330	+
3UTR-5UTR	ENST00000462274	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
3UTR-5UTR	ENST00000462274	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
3UTR-5UTR	ENST00000462274	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
3UTR-intron	ENST00000462274	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000338785	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000338785	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000338785	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000338785	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000451934	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000451934	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000451934	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000451934	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000321219	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000321219	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000321219	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000321219	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000339659	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000339659	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000339659	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000339659	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000398960	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000398960	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000398960	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000398960	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000398956	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000398956	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000398956	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000398956	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000455387	ENST00000245663		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000455387	ENST00000395104		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000455387	ENST00000302995		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
intron-intron	ENST00000455387	ENST00000480766		TCGA	RV	BRCA	TCGA-C8-A130-01A	DYRK1A	chr21	38845182	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000416426	ENST00000534836		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000416426	ENST00000541045		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000416426	ENST00000536908		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000416426	ENST00000378738		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000416426	ENST00000394832		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000416426	ENST00000320856		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000416426	ENST00000394835		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000534836		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000541045		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000536908		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000378738		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000394832		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000320856		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000284073	ENST00000394835		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000534836		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000541045		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000536908		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000378738		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000394832		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000320856		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000322684	ENST00000394835		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000534836		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000541045		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000536908		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000378738		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000394832		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000320856		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000442934	ENST00000394835		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000534836		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000541045		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000536908		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000378738		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000394832		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000320856		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5CDS-intron	ENST00000579180	ENST00000394835		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000534836		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000541045		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000536908		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000378738		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000394832		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000320856		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
3UTR-intron	ENST00000579505	ENST00000394835		TCGA	RV	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55607085	+	EFCAB5	chr17	28378136	+
5UTR-intron	ENST00000351960	ENST00000413292		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000351960	ENST00000164133		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000358965	ENST00000413292		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000358965	ENST00000164133		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000393695	ENST00000413292		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000393695	ENST00000164133		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000543450	ENST00000413292		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
5UTR-intron	ENST00000543450	ENST00000164133		TCGA	RV	BRCA	TCGA-E2-A1IU-01A	NUMA1	chr11	71780888	-	PPP2R5B	chr11	64694184	+
intron-5UTR	ENST00000449833	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449833	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449833	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449833	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000449833	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000449833	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409161	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409161	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409161	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409161	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000409161	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000409161	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000423696	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000423696	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000423696	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000423696	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000423696	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000423696	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000338508	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000338508	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000338508	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000338508	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000338508	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000338508	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409530	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409530	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409530	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000409530	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000409530	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000409530	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449116	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449116	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449116	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000449116	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000449116	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000449116	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000357171	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000357171	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000357171	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000357171	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000357171	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000357171	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000468619	ENST00000540367		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000468619	ENST00000376618		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000468619	ENST00000265641		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000468619	ENST00000539743		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000468619	ENST00000537756		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000468619	ENST00000538994		TCGA	RV	BRCA	TCGA-A8-A07W-01A	SHANK2	chr11	70935743	-	CPT1A	chr11	68582955	-
In-frame	ENST00000252996	ENST00000335351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61490878	-
In-frame	ENST00000252996	ENST00000217162		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61490878	-
intron-3CDS	ENST00000609045	ENST00000335351		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61490878	-
intron-3CDS	ENST00000609045	ENST00000217162		TCGA	RV	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61490878	-
5CDS-intron	ENST00000469185	ENST00000377791		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000469185	ENST00000602637		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000312541	ENST00000377791		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000312541	ENST00000602637		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000541522	ENST00000377791		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000541522	ENST00000602637		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000429381	ENST00000377791		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000429381	ENST00000602637		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	BTN2A1	chr6	26466316	+	HIST1H2AC	chr6	26138282	+
In-frame	ENST00000367321	ENST00000367225		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	MTHFD1L	chr6	151209117	+	RGS17	chr6	153365178	-
5CDS-5UTR	ENST00000367321	ENST00000206262		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	MTHFD1L	chr6	151209117	+	RGS17	chr6	153365178	-
In-frame	ENST00000367307	ENST00000367225		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	MTHFD1L	chr6	151209117	+	RGS17	chr6	153365178	-
5CDS-5UTR	ENST00000367307	ENST00000206262		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	MTHFD1L	chr6	151209117	+	RGS17	chr6	153365178	-
intron-3CDS	ENST00000478643	ENST00000367225		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	MTHFD1L	chr6	151209117	+	RGS17	chr6	153365178	-
intron-5UTR	ENST00000478643	ENST00000206262		TCGA	RV	BRCA	TCGA-A2-A0CY-01A	MTHFD1L	chr6	151209117	+	RGS17	chr6	153365178	-
5CDS-5UTR	ENST00000327040	ENST00000376141		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
5CDS-5UTR	ENST00000327040	ENST00000218068		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
5CDS-3UTR	ENST00000327040	ENST00000478785		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
5CDS-5UTR	ENST00000440756	ENST00000376141		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
5CDS-5UTR	ENST00000440756	ENST00000218068		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
5CDS-3UTR	ENST00000440756	ENST00000478785		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000286485	ENST00000376141		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000286485	ENST00000218068		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-3UTR	ENST00000286485	ENST00000478785		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000428502	ENST00000376141		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000428502	ENST00000218068		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-3UTR	ENST00000428502	ENST00000478785		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000523619	ENST00000376141		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000523619	ENST00000218068		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-3UTR	ENST00000523619	ENST00000478785		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000520789	ENST00000376141		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000520789	ENST00000218068		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
intron-3UTR	ENST00000520789	ENST00000478785		TCGA	RV	BRCA	TCGA-A2-A04U-01A	PSD3	chr8	18871073	-	PAGE4	chrX	49595002	+
5UTR-3CDS	ENST00000430069	ENST00000335762		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399655		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000480911		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399644		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000344100		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399638		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399629		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399597		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000327702		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399621		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399649		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399637		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000402845		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399591		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399641		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000347598		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399606		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399595		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399601		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399603		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399634		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000399617		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000430069	ENST00000406454		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-intron	ENST00000430069	ENST00000491104		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000335762		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399655		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000480911		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399644		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000344100		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399638		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399629		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399597		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000327702		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399621		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399649		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399637		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000402845		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399591		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399641		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000347598		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399606		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399595		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399601		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399603		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399634		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000399617		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-3CDS	ENST00000457928	ENST00000406454		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
5UTR-intron	ENST00000457928	ENST00000491104		TCGA	RV	BRCA	TCGA-D8-A27V-01A	TBL1XR1	chr3	176816254	-	CACNA1C	chr12	2721069	+
In-frame	ENST00000589222	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
In-frame	ENST00000407086	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
In-frame	ENST00000390652	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
In-frame	ENST00000408905	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
In-frame	ENST00000588462	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
intron-3CDS	ENST00000585744	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
intron-3CDS	ENST00000588874	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
intron-3CDS	ENST00000585812	ENST00000299563		TCGA	RV	BRCA	TCGA-BH-A18R-01A	BCAS3	chr17	58786686	+	RNF169	chr11	74521229	+
Frame-shit	ENST00000394303	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
Frame-shit	ENST00000394303	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
Frame-shit	ENST00000394310	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
Frame-shit	ENST00000394310	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
Frame-shit	ENST00000344140	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
Frame-shit	ENST00000344140	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
5UTR-3CDS	ENST00000582877	ENST00000424789		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
5UTR-3CDS	ENST00000582877	ENST00000389520		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	CACNB1	chr17	37347727	-	TANC2	chr17	61151304	+
5CDS-5UTR	ENST00000295688	ENST00000367268		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000295688	ENST00000367267		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000368259	ENST00000367268		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000368259	ENST00000367267		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000368261	ENST00000367268		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000368261	ENST00000367267		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000472765	ENST00000367268		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5CDS-5UTR	ENST00000472765	ENST00000367267		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5UTR-5UTR	ENST00000368256	ENST00000367268		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
5UTR-5UTR	ENST00000368256	ENST00000367267		TCGA	RV	BRCA	TCGA-AO-A0J3-01A	CCT3	chr1	156303338	-	SYT2	chr1	202574917	-
intron-3CDS	ENST00000531610	ENST00000025008		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
intron-3CDS	ENST00000531610	ENST00000435644		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
intron-intron	ENST00000531610	ENST00000521611		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
intron-intron	ENST00000531610	ENST00000539297		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
Frame-shit	ENST00000289957	ENST00000025008		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
Frame-shit	ENST00000289957	ENST00000435644		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
5CDS-intron	ENST00000289957	ENST00000521611		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
5CDS-intron	ENST00000289957	ENST00000539297		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	CHRNB3	chr8	42565577	+	RB1CC1	chr8	53558427	-
intron-3CDS	ENST00000392975	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000392975	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-3CDS	ENST00000360793	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-5UTR	ENST00000360793	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000584031	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000584031	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000392976	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000392976	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-3CDS	ENST00000582297	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-5UTR	ENST00000582297	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000581573	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000581573	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-3CDS	ENST00000448884	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-5UTR	ENST00000448884	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-3CDS	ENST00000582034	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
5UTR-5UTR	ENST00000582034	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000542042	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000542042	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000581163	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000581163	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000582997	ENST00000439174		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-5UTR	ENST00000582997	ENST00000541118		TCGA	RV	BRCA	TCGA-C8-A12P-01A	CYB561	chr17	61523606	-	GNA13	chr17	63049846	-
intron-3CDS	ENST00000508198	ENST00000320650		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
intron-3CDS	ENST00000508198	ENST00000296545		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
intron-3CDS	ENST00000508198	ENST00000514653		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
intron-3CDS	ENST00000508198	ENST00000529613		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
intron-3CDS	ENST00000508198	ENST00000477265		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
intron-3CDS	ENST00000508198	ENST00000394159		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000435205	ENST00000320650		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000435205	ENST00000296545		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000435205	ENST00000514653		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000435205	ENST00000529613		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000435205	ENST00000477265		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000435205	ENST00000394159		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000505231	ENST00000320650		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000505231	ENST00000296545		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000505231	ENST00000514653		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000505231	ENST00000529613		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000505231	ENST00000477265		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
Frame-shit	ENST00000505231	ENST00000394159		TCGA	RV	BRCA	TCGA-AN-A04C-01A	FAM160A1	chr4	152510078	+	IL15	chr4	142653891	+
5CDS-5UTR	ENST00000370500	ENST00000446900		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5CDS-5UTR	ENST00000370500	ENST00000370491		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5CDS-5UTR	ENST00000370500	ENST00000260508		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5CDS-3UTR	ENST00000370500	ENST00000370485		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5UTR-5UTR	ENST00000494819	ENST00000446900		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5UTR-5UTR	ENST00000494819	ENST00000370491		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5UTR-5UTR	ENST00000494819	ENST00000260508		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
5UTR-3UTR	ENST00000494819	ENST00000370485		TCGA	RV	BRCA	TCGA-BH-A1FD-01A	GTF2B	chr1	89352944	-	CCBL2	chr1	89401928	-
In-frame	ENST00000524419	ENST00000263398		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
Frame-shit	ENST00000524419	ENST00000526025		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000449691		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000360158		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000415148		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000437706		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000433354		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000428726		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000526669		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000433892		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000278386		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000434472		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000524419	ENST00000352818		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
5CDS-intron	ENST00000524419	ENST00000528922		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000263398		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
Frame-shit	ENST00000528989	ENST00000526025		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000449691		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000360158		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000415148		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000437706		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000433354		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000428726		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000526669		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000433892		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000278386		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000434472		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000528989	ENST00000352818		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
5CDS-intron	ENST00000528989	ENST00000528922		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000263398		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
Frame-shit	ENST00000315571	ENST00000526025		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000449691		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000360158		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000415148		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000437706		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000433354		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000428726		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000526669		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000433892		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000278386		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000434472		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
In-frame	ENST00000315571	ENST00000352818		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
5CDS-intron	ENST00000315571	ENST00000528922		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000263398		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000526025		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000449691		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000360158		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000415148		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000437706		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000433354		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000428726		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000526669		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000433892		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000278386		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000434472		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-3CDS	ENST00000529759	ENST00000352818		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
intron-intron	ENST00000529759	ENST00000528922		TCGA	RV	BRCA	TCGA-E9-A22G-01A	LDLRAD3	chr11	35965694	+	CD44	chr11	35198122	+
5UTR-3CDS	ENST00000586178	ENST00000225298		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49343543	+
intron-3CDS	ENST00000415868	ENST00000225298		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49343543	+
5UTR-3CDS	ENST00000376381	ENST00000225298		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49343543	+
intron-3CDS	ENST00000593259	ENST00000225298		TCGA	RV	BRCA	TCGA-BH-A0B1-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49343543	+
In-frame	ENST00000371917	ENST00000528852		TCGA	RV	BRCA	TCGA-BH-A0H6-01A	ARFGEF2	chr20	47558524	+	CNIH2	chr11	66049730	+
In-frame	ENST00000371917	ENST00000311445		TCGA	RV	BRCA	TCGA-BH-A0H6-01A	ARFGEF2	chr20	47558524	+	CNIH2	chr11	66049730	+
5CDS-3UTR	ENST00000371917	ENST00000530519		TCGA	RV	BRCA	TCGA-BH-A0H6-01A	ARFGEF2	chr20	47558524	+	CNIH2	chr11	66049730	+
intron-3CDS	ENST00000493140	ENST00000528852		TCGA	RV	BRCA	TCGA-BH-A0H6-01A	ARFGEF2	chr20	47558524	+	CNIH2	chr11	66049730	+
intron-3CDS	ENST00000493140	ENST00000311445		TCGA	RV	BRCA	TCGA-BH-A0H6-01A	ARFGEF2	chr20	47558524	+	CNIH2	chr11	66049730	+
intron-3UTR	ENST00000493140	ENST00000530519		TCGA	RV	BRCA	TCGA-BH-A0H6-01A	ARFGEF2	chr20	47558524	+	CNIH2	chr11	66049730	+
In-frame	ENST00000358791	ENST00000371621		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
In-frame	ENST00000358791	ENST00000541713		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
intron-3CDS	ENST00000262591	ENST00000371621		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
intron-3CDS	ENST00000262591	ENST00000541713		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
In-frame	ENST00000371608	ENST00000371621		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
In-frame	ENST00000371608	ENST00000541713		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
In-frame	ENST00000609336	ENST00000371621		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
In-frame	ENST00000609336	ENST00000541713		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
intron-3CDS	ENST00000485049	ENST00000371621		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
intron-3CDS	ENST00000485049	ENST00000541713		TCGA	RV	BRCA	TCGA-A8-A07W-01A	BCAS4	chr20	49458437	+	PTPN1	chr20	49194957	+
Frame-shit	ENST00000394906	ENST00000225873		TCGA	RV	BRCA	TCGA-A2-A25B-01A	FLOT2	chr17	27215963	-	PEX12	chr17	33904610	-
Frame-shit	ENST00000394908	ENST00000225873		TCGA	RV	BRCA	TCGA-A2-A25B-01A	FLOT2	chr17	27215963	-	PEX12	chr17	33904610	-
Frame-shit	ENST00000585169	ENST00000225873		TCGA	RV	BRCA	TCGA-A2-A25B-01A	FLOT2	chr17	27215963	-	PEX12	chr17	33904610	-
intron-3CDS	ENST00000577789	ENST00000225873		TCGA	RV	BRCA	TCGA-A2-A25B-01A	FLOT2	chr17	27215963	-	PEX12	chr17	33904610	-
In-frame	ENST00000492622	ENST00000267163		TCGA	RV	BRCA	TCGA-C8-A12K-01A	FNDC3A	chr13	49688867	+	RB1	chr13	49037867	+
5CDS-intron	ENST00000492622	ENST00000484879		TCGA	RV	BRCA	TCGA-C8-A12K-01A	FNDC3A	chr13	49688867	+	RB1	chr13	49037867	+
In-frame	ENST00000541916	ENST00000267163		TCGA	RV	BRCA	TCGA-C8-A12K-01A	FNDC3A	chr13	49688867	+	RB1	chr13	49037867	+
5CDS-intron	ENST00000541916	ENST00000484879		TCGA	RV	BRCA	TCGA-C8-A12K-01A	FNDC3A	chr13	49688867	+	RB1	chr13	49037867	+
In-frame	ENST00000398316	ENST00000267163		TCGA	RV	BRCA	TCGA-C8-A12K-01A	FNDC3A	chr13	49688867	+	RB1	chr13	49037867	+
5CDS-intron	ENST00000398316	ENST00000484879		TCGA	RV	BRCA	TCGA-C8-A12K-01A	FNDC3A	chr13	49688867	+	RB1	chr13	49037867	+
Frame-shit	ENST00000511689	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000511689	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5CDS-3UTR	ENST00000511689	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5UTR-3CDS	ENST00000512507	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5UTR-3CDS	ENST00000512507	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5UTR-3UTR	ENST00000512507	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000304332	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000304332	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5CDS-3UTR	ENST00000304332	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000312469	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000312469	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3UTR	ENST00000312469	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000423969	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3CDS	ENST00000423969	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
intron-3UTR	ENST00000423969	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
In-frame	ENST00000510038	ENST00000261951		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
In-frame	ENST00000510038	ENST00000393356		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
5CDS-3UTR	ENST00000510038	ENST00000502447		TCGA	RV	BRCA	TCGA-E2-A15E-06A	H2AFY	chr5	134688636	-	CNOT6	chr5	179991489	+
Frame-shit	ENST00000394287	ENST00000315489		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	MED1	chr17	37604051	-	ODF3L2	chr19	464364	-
In-frame	ENST00000394287	ENST00000382696		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	MED1	chr17	37604051	-	ODF3L2	chr19	464364	-
Frame-shit	ENST00000300651	ENST00000315489		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	MED1	chr17	37604051	-	ODF3L2	chr19	464364	-
In-frame	ENST00000300651	ENST00000382696		TCGA	RV	BRCA	TCGA-LL-A5YN-01A	MED1	chr17	37604051	-	ODF3L2	chr19	464364	-
5CDS-intron	ENST00000477902	ENST00000368554		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-intron	ENST00000477902	ENST00000361518		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-3UTR	ENST00000477902	ENST00000359035		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-3UTR	ENST00000477902	ENST00000463816		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-intron	ENST00000317502	ENST00000368554		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-intron	ENST00000317502	ENST00000361518		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-3UTR	ENST00000317502	ENST00000359035		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5CDS-3UTR	ENST00000317502	ENST00000463816		TCGA	RV	BRCA	TCGA-C8-A137-01A	MTG1	chr10	135216277	+	ZNF511	chr10	135126292	+
5UTR-3CDS	ENST00000254998	ENST00000380445		TCGA	RV	BRCA	TCGA-E2-A109-01A	NXT1	chr20	23331698	+	VPS16	chr20	2840365	+
5UTR-3CDS	ENST00000254998	ENST00000380469		TCGA	RV	BRCA	TCGA-E2-A109-01A	NXT1	chr20	23331698	+	VPS16	chr20	2840365	+
5UTR-intron	ENST00000254998	ENST00000481812		TCGA	RV	BRCA	TCGA-E2-A109-01A	NXT1	chr20	23331698	+	VPS16	chr20	2840365	+
5UTR-intron	ENST00000254998	ENST00000380443		TCGA	RV	BRCA	TCGA-E2-A109-01A	NXT1	chr20	23331698	+	VPS16	chr20	2840365	+
Frame-shit	ENST00000420696	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000420696	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000420696	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000420696	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000401534	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000401534	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000401534	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000401534	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000559240	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000559240	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000559240	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000559240	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000367897	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000367897	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000367897	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000367897	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000540236	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000540236	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000540236	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000540236	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000560641	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000560641	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000560641	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000560641	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000474046	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000474046	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000474046	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000474046	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000485769	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000485769	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000485769	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000485769	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000540246	ENST00000433211		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000540246	ENST00000373744		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000540246	ENST00000545309		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000540246	ENST00000373735		TCGA	RV	BRCA	TCGA-B6-A0IQ-01A	PBX1	chr1	164781386	+	CTNNA3	chr10	68535282	-
Frame-shit	ENST00000425013	ENST00000278742		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	RNF216	chr7	5751392	-	ST14	chr11	130058009	+
Frame-shit	ENST00000389902	ENST00000278742		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	RNF216	chr7	5751392	-	ST14	chr11	130058009	+
intron-3CDS	ENST00000469375	ENST00000278742		TCGA	RV	BRCA	TCGA-B6-A0IM-01A	RNF216	chr7	5751392	-	ST14	chr11	130058009	+
Frame-shit	ENST00000371142	ENST00000266058		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
Frame-shit	ENST00000371142	ENST00000371070		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
5CDS-intron	ENST00000371142	ENST00000371041		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
5CDS-intron	ENST00000371142	ENST00000456008		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
intron-3CDS	ENST00000490192	ENST00000266058		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
intron-3CDS	ENST00000490192	ENST00000371070		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
intron-intron	ENST00000490192	ENST00000371041		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
intron-intron	ENST00000490192	ENST00000456008		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	TM9SF3	chr10	98346491	-	SLIT1	chr10	98808875	-
intron-intron	ENST00000338458	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000338458	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000338458	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000338458	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000496106	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000496106	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000496106	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000496106	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000498517	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000498517	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000498517	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000498517	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000296315	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000296315	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000296315	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000296315	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000413728	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000413728	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000413728	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000413728	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000497267	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000497267	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000497267	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
intron-intron	ENST00000497267	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000495373	ENST00000231751		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000495373	ENST00000426532		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000495373	ENST00000417439		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5CDS-intron	ENST00000495373	ENST00000493056		TCGA	RV	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46509809	-
5UTR-intron	ENST00000439374	ENST00000520408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000439374	ENST00000310430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000439374	ENST00000518281		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000439374	ENST00000522110		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000439374	ENST00000518027		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000540998	ENST00000520408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000540998	ENST00000310430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000540998	ENST00000518281		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000540998	ENST00000522110		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000540998	ENST00000518027		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000357235	ENST00000520408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000357235	ENST00000310430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000357235	ENST00000518281		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000357235	ENST00000522110		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000357235	ENST00000518027		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000492796	ENST00000520408		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000492796	ENST00000310430		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000492796	ENST00000518281		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000492796	ENST00000522110		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
5UTR-intron	ENST00000492796	ENST00000518027		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CDC42SE1	chr1	151031955	-	TNKS	chr8	9619026	+
intron-3CDS	ENST00000311172	ENST00000449833		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000311172	ENST00000409161		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000311172	ENST00000423696		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000311172	ENST00000338508		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000311172	ENST00000409530		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000311172	ENST00000449116		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000311172	ENST00000357171		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-intron	ENST00000311172	ENST00000468619		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000449833		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000409161		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000423696		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000338508		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000409530		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000449116		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409314	ENST00000357171		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000409314	ENST00000468619		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000449833		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000409161		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000423696		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000338508		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000409530		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000449116		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
Frame-shit	ENST00000409418	ENST00000357171		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5CDS-intron	ENST00000409418	ENST00000468619		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000449833		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000409161		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000423696		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000338508		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000409530		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000449116		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000458644	ENST00000357171		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-intron	ENST00000458644	ENST00000468619		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000449833		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000409161		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000423696		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000338508		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000409530		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000449116		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-3CDS	ENST00000409853	ENST00000357171		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-intron	ENST00000409853	ENST00000468619		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000449833		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000409161		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000423696		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000338508		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000409530		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000449116		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-3CDS	ENST00000409263	ENST00000357171		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
intron-intron	ENST00000409263	ENST00000468619		TCGA	RV	BRCA	TCGA-B6-A0RL-01A	FCHSD2	chr11	72851076	-	SHANK2	chr11	70338570	-
5UTR-5UTR	ENST00000264229	ENST00000426559		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
5UTR-5UTR	ENST00000264229	ENST00000455785		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
5UTR-5UTR	ENST00000264229	ENST00000399728		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
5UTR-5UTR	ENST00000264229	ENST00000465604		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
5UTR-5UTR	ENST00000264229	ENST00000357865		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
5UTR-5UTR	ENST00000264229	ENST00000374291		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000541073	ENST00000426559		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000541073	ENST00000455785		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000541073	ENST00000399728		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000541073	ENST00000465604		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000541073	ENST00000357865		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000541073	ENST00000374291		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000504228	ENST00000426559		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000504228	ENST00000455785		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000504228	ENST00000399728		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000504228	ENST00000465604		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000504228	ENST00000357865		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000504228	ENST00000374291		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000505410	ENST00000426559		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000505410	ENST00000455785		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000505410	ENST00000399728		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000505410	ENST00000465604		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000505410	ENST00000357865		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
intron-5UTR	ENST00000505410	ENST00000374291		TCGA	RV	BRCA	TCGA-E2-A14Q-01A	KIAA1211	chr4	57045596	+	STMN1	chr1	26231229	-
In-frame	ENST00000435120	ENST00000389462		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000435120	ENST00000309083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000435120	ENST00000538057		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000203630	ENST00000389462		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000203630	ENST00000309083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000203630	ENST00000538057		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000542154	ENST00000389462		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000542154	ENST00000309083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000542154	ENST00000538057		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000539187	ENST00000389462		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000539187	ENST00000309083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000539187	ENST00000538057		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
intron-3CDS	ENST00000564181	ENST00000389462		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
intron-3CDS	ENST00000564181	ENST00000309083		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
intron-3UTR	ENST00000564181	ENST00000538057		TCGA	RV	BRCA	TCGA-E2-A14T-01A	MLF2	chr12	6860807	-	PTMS	chr12	6878769	+
In-frame	ENST00000300184	ENST00000421419		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000300184	ENST00000377264		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000358246	ENST00000421419		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000358246	ENST00000377264		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000530234	ENST00000421419		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000530234	ENST00000377264		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000534016	ENST00000421419		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
In-frame	ENST00000534016	ENST00000377264		TCGA	RV	BRCA	TCGA-EW-A1IW-01A	MS4A7	chr11	60150761	+	ATG2A	chr11	64681972	-
Frame-shit	ENST00000545708	ENST00000370321		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MTF2	chr1	93581175	+	RPL5	chr1	93306108	+
Frame-shit	ENST00000540243	ENST00000370321		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MTF2	chr1	93581175	+	RPL5	chr1	93306108	+
Frame-shit	ENST00000370298	ENST00000370321		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MTF2	chr1	93581175	+	RPL5	chr1	93306108	+
3UTR-3CDS	ENST00000471953	ENST00000370321		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MTF2	chr1	93581175	+	RPL5	chr1	93306108	+
Frame-shit	ENST00000370303	ENST00000370321		TCGA	RV	BRCA	TCGA-A7-A13D-01A	MTF2	chr1	93581175	+	RPL5	chr1	93306108	+
5UTR-3CDS	ENST00000336866	ENST00000535781		TCGA	RV	BRCA	TCGA-AR-A254-01A	OPRL1	chr20	62711705	+	PRPF6	chr20	62641553	+
5UTR-3CDS	ENST00000355631	ENST00000535781		TCGA	RV	BRCA	TCGA-AR-A254-01A	OPRL1	chr20	62711705	+	PRPF6	chr20	62641553	+
intron-3CDS	ENST00000349451	ENST00000535781		TCGA	RV	BRCA	TCGA-AR-A254-01A	OPRL1	chr20	62711705	+	PRPF6	chr20	62641553	+
In-frame	ENST00000538486	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000538486	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000538486	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000397323	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000397323	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000397323	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000320203	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000320203	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000320203	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000287771	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000287771	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000287771	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000339877	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000339877	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000339877	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000517860	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
In-frame	ENST00000517860	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000517860	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000520161	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000520161	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-intron	ENST00000520161	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000519647	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000519647	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-intron	ENST00000519647	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000520191	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000520191	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-intron	ENST00000520191	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000520916	ENST00000376874		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-3CDS	ENST00000520916	ENST00000340724		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
intron-intron	ENST00000520916	ENST00000544468		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	RBPMS	chr8	30242674	+	RILPL1	chr12	123970352	-
5CDS-5UTR	ENST00000361236	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000361236	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000361236	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000361236	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000361236	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000361236	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000398136	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000398136	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000398136	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000398136	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000398136	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000398136	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000532161	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000532161	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000532161	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000532161	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000532161	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000532161	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525577	ENST00000527185		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525577	ENST00000528682		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525577	ENST00000524871		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525577	ENST00000418526		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
intron-intron	ENST00000525577	ENST00000279463		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
intron-intron	ENST00000525577	ENST00000524560		TCGA	RV	BRCA	TCGA-AO-A0JD-01A	TMEM123	chr11	102272270	-	CNTN5	chr11	99426876	+
In-frame	ENST00000539605	ENST00000355257		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000539605	ENST00000215956		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000539605	ENST00000401959		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000539605	ENST00000463675		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000539605	ENST00000402458		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000357997	ENST00000355257		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000357997	ENST00000215956		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000357997	ENST00000401959		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000357997	ENST00000463675		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000357997	ENST00000402458		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542282	ENST00000355257		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542282	ENST00000215956		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542282	ENST00000401959		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000542282	ENST00000463675		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000542282	ENST00000402458		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542657	ENST00000355257		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542657	ENST00000215956		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542657	ENST00000401959		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000542657	ENST00000463675		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000542657	ENST00000402458		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542374	ENST00000355257		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542374	ENST00000215956		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000542374	ENST00000401959		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000542374	ENST00000463675		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000542374	ENST00000402458		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000337516	ENST00000355257		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000337516	ENST00000215956		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
In-frame	ENST00000337516	ENST00000401959		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000337516	ENST00000463675		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000337516	ENST00000402458		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	ANKLE2	chr12	133324418	-	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000446014	ENST00000299320		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
Frame-shit	ENST00000446014	ENST00000590191		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
In-frame	ENST00000304283	ENST00000299320		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
In-frame	ENST00000304283	ENST00000590191		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
Frame-shit	ENST00000585773	ENST00000299320		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
Frame-shit	ENST00000585773	ENST00000590191		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
Frame-shit	ENST00000450067	ENST00000299320		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
Frame-shit	ENST00000450067	ENST00000590191		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
intron-3CDS	ENST00000592711	ENST00000299320		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
intron-3CDS	ENST00000592711	ENST00000590191		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	ANKS3	chr16	4764052	-	C16orf71	chr16	4796376	+
5CDS-5UTR	ENST00000589222	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000589222	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000589222	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000407086	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000407086	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000407086	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000390652	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000390652	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000390652	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000408905	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000408905	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000408905	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000588462	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000588462	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000588462	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000585744	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000585744	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000585744	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000588874	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000588874	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000588874	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
intron-5UTR	ENST00000585812	ENST00000529704		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
intron-5UTR	ENST00000585812	ENST00000312419		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
intron-5UTR	ENST00000585812	ENST00000539074		TCGA	RV	BRCA	TCGA-AN-A0XW-01A	BCAS3	chr17	59001861	+	POLD4	chr11	67120548	-
In-frame	ENST00000455140	ENST00000525428		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000455140	ENST00000263309		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000455140	ENST00000525064		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000455140	ENST00000532069		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000455140	ENST00000528364		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
5CDS-intron	ENST00000455140	ENST00000533957		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000248070	ENST00000525428		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000248070	ENST00000263309		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000248070	ENST00000525064		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000248070	ENST00000532069		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000248070	ENST00000528364		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
5CDS-intron	ENST00000248070	ENST00000533957		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000535753	ENST00000525428		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000535753	ENST00000263309		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000535753	ENST00000525064		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000535753	ENST00000532069		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000535753	ENST00000528364		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
5CDS-intron	ENST00000535753	ENST00000533957		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000594975	ENST00000525428		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000594975	ENST00000263309		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000594975	ENST00000525064		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000594975	ENST00000532069		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000594975	ENST00000528364		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
5CDS-intron	ENST00000594975	ENST00000533957		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
intron-3CDS	ENST00000602009	ENST00000525428		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
intron-3CDS	ENST00000602009	ENST00000263309		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
intron-3CDS	ENST00000602009	ENST00000525064		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
intron-3CDS	ENST00000602009	ENST00000532069		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
intron-3CDS	ENST00000602009	ENST00000528364		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
intron-intron	ENST00000602009	ENST00000533957		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000597937	ENST00000525428		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000597937	ENST00000263309		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000597937	ENST00000525064		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000597937	ENST00000532069		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
In-frame	ENST00000597937	ENST00000528364		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
5CDS-intron	ENST00000597937	ENST00000533957		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EPS15L1	chr19	16552703	-	CLNS1A	chr11	77330740	-
Frame-shit	ENST00000543086	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
Frame-shit	ENST00000546231	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
Frame-shit	ENST00000397203	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
Frame-shit	ENST00000360905	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
Frame-shit	ENST00000589028	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
Frame-shit	ENST00000355446	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
intron-3CDS	ENST00000536573	ENST00000372813		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ERC1	chr12	1517413	+	TOMM34	chr20	43572220	-
5CDS-5UTR	ENST00000397786	ENST00000535240		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	MED13	chr17	60142501	-	KCNJ2	chr17	68170965	+
5CDS-5UTR	ENST00000397786	ENST00000243457		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	MED13	chr17	60142501	-	KCNJ2	chr17	68170965	+
intron-5UTR	ENST00000580896	ENST00000535240		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	MED13	chr17	60142501	-	KCNJ2	chr17	68170965	+
intron-5UTR	ENST00000580896	ENST00000243457		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	MED13	chr17	60142501	-	KCNJ2	chr17	68170965	+
intron-3CDS	ENST00000347330	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000347330	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000347330	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3UTR	ENST00000347330	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000347330	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000347330	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000347330	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000413209	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000413209	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413209	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000413209	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413209	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413209	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413209	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000338641	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000338641	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000338641	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000338641	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000338641	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000338641	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000338641	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000403435	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000403435	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403435	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000403435	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403435	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403435	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403435	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000361452	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000361452	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000361452	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3UTR	ENST00000361452	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000361452	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000361452	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000361452	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000403999	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000403999	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403999	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000403999	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403999	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403999	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000403999	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000334961	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000334961	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000334961	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3UTR	ENST00000334961	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000334961	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000334961	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000334961	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000353887	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000353887	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000353887	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-3UTR	ENST00000353887	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000353887	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000353887	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000353887	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000361166	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000361166	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361166	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000361166	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361166	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361166	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361166	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000397789	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000397789	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000397789	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000397789	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000397789	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000397789	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000397789	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000361676	ENST00000543252		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
In-frame	ENST00000361676	ENST00000344138		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361676	ENST00000540310		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000361676	ENST00000478445		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361676	ENST00000544756		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361676	ENST00000399090		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000361676	ENST00000407075		TCGA	RV	BRCA	TCGA-A2-A0SV-01A	NF2	chr22	30035201	+	GRAP2	chr22	40351823	+
3UTR-3CDS	ENST00000367311	ENST00000255416		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PHLDA3	chr1	201437469	-	MYBPH	chr1	203139578	-
5UTR-3CDS	ENST00000485436	ENST00000255416		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PHLDA3	chr1	201437469	-	MYBPH	chr1	203139578	-
3UTR-3CDS	ENST00000367309	ENST00000255416		TCGA	RV	BRCA	TCGA-E9-A22D-01A	PHLDA3	chr1	201437469	-	MYBPH	chr1	203139578	-
Frame-shit	ENST00000355303	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
Frame-shit	ENST00000398543	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
Frame-shit	ENST00000538023	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
intron-3CDS	ENST00000316296	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
Frame-shit	ENST00000530676	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
Frame-shit	ENST00000531349	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
3UTR-3CDS	ENST00000525494	ENST00000307201		TCGA	RV	BRCA	TCGA-C8-A1HK-01A	ANO1	chr11	70028792	+	ABHD15	chr17	27890104	-
5CDS-intron	ENST00000291439	ENST00000592613		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000291439	ENST00000591366		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000291439	ENST00000592160		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000291439	ENST00000343769		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000541844	ENST00000592613		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000541844	ENST00000591366		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000541844	ENST00000592160		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000541844	ENST00000343769		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000590756	ENST00000592613		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000590756	ENST00000591366		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000590756	ENST00000592160		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000590756	ENST00000343769		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000429941	ENST00000592613		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000429941	ENST00000591366		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000429941	ENST00000592160		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000429941	ENST00000343769		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000444449	ENST00000592613		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000444449	ENST00000591366		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000444449	ENST00000592160		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
5CDS-intron	ENST00000444449	ENST00000343769		TCGA	RV	BRCA	TCGA-BH-A0BR-01A	AP1M1	chr19	16319988	+	ZNF93	chr19	20043991	+
3UTR-5UTR	ENST00000521282	ENST00000315769		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
3UTR-5UTR	ENST00000521282	ENST00000297737		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
3UTR-5UTR	ENST00000521282	ENST00000523823		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000432471	ENST00000315769		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000432471	ENST00000297737		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000432471	ENST00000523823		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000287322	ENST00000315769		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000287322	ENST00000297737		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000287322	ENST00000523823		TCGA	RV	BRCA	TCGA-AC-A2BM-01A	BAG4	chr8	38034657	+	ZMAT4	chr8	40683199	-
Frame-shit	ENST00000222219	ENST00000437766		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000222219	ENST00000357720		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000222219	ENST00000221504		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000222219	ENST00000592062		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
5CDS-intron	ENST00000222219	ENST00000592892		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000538460	ENST00000437766		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000538460	ENST00000357720		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000538460	ENST00000221504		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
Frame-shit	ENST00000538460	ENST00000592062		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
5CDS-intron	ENST00000538460	ENST00000592892		TCGA	RV	BRCA	TCGA-AC-A8OQ-01A	DNASE2	chr19	12989196	-	TRMT1	chr19	13216210	-
intron-3CDS	ENST00000373314	ENST00000313050		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
intron-intron	ENST00000373314	ENST00000467838		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
intron-intron	ENST00000373314	ENST00000371706		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
intron-intron	ENST00000373314	ENST00000313084		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
intron-intron	ENST00000373314	ENST00000290037		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
intron-intron	ENST00000373314	ENST00000431893		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
intron-intron	ENST00000373314	ENST00000398335		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
In-frame	ENST00000373312	ENST00000313050		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5CDS-intron	ENST00000373312	ENST00000467838		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5CDS-intron	ENST00000373312	ENST00000371706		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5CDS-intron	ENST00000373312	ENST00000313084		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5CDS-intron	ENST00000373312	ENST00000290037		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5CDS-intron	ENST00000373312	ENST00000431893		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5CDS-intron	ENST00000373312	ENST00000398335		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-3CDS	ENST00000468379	ENST00000313050		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-intron	ENST00000468379	ENST00000467838		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-intron	ENST00000468379	ENST00000371706		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-intron	ENST00000468379	ENST00000313084		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-intron	ENST00000468379	ENST00000290037		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-intron	ENST00000468379	ENST00000431893		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
5UTR-intron	ENST00000468379	ENST00000398335		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	SEC16A	chr9	139342613	-
In-frame	ENST00000406961	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000406961	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000406961	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
intron-3CDS	ENST00000469850	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
intron-3CDS	ENST00000469850	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
intron-intron	ENST00000469850	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000405141	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000405141	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000405141	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5UTR-3CDS	ENST00000407230	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5UTR-3CDS	ENST00000407230	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5UTR-intron	ENST00000407230	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000538539	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000538539	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000538539	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000288599	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000288599	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000288599	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000348332	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000348332	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000348332	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000395856	ENST00000340645		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
In-frame	ENST00000395856	ENST00000393667		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000395856	ENST00000472829		TCGA	RV	BRCA	TCGA-OL-A5RW-01A	NCOA1	chr2	24896332	+	GOLGB1	chr3	121388202	-
Frame-shit	ENST00000351960	ENST00000534749		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
Frame-shit	ENST00000351960	ENST00000436757		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
Frame-shit	ENST00000351960	ENST00000356404		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
5CDS-intron	ENST00000351960	ENST00000526450		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
In-frame	ENST00000358965	ENST00000534749		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
In-frame	ENST00000358965	ENST00000436757		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
In-frame	ENST00000358965	ENST00000356404		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
5CDS-intron	ENST00000358965	ENST00000526450		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
Frame-shit	ENST00000393695	ENST00000534749		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
Frame-shit	ENST00000393695	ENST00000436757		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
Frame-shit	ENST00000393695	ENST00000356404		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
5CDS-intron	ENST00000393695	ENST00000526450		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
intron-3CDS	ENST00000543450	ENST00000534749		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
intron-3CDS	ENST00000543450	ENST00000436757		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
intron-3CDS	ENST00000543450	ENST00000356404		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
intron-intron	ENST00000543450	ENST00000526450		TCGA	RV	BRCA	TCGA-E2-A107-01A	NUMA1	chr11	71718235	-	PITPNM1	chr11	67265793	-
In-frame	ENST00000202556	ENST00000286953		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000554880		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000555030		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000414262		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000553430		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000557040		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000202556	ENST00000553449		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000202556	ENST00000554713		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000286953		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000554880		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000555030		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000414262		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000553430		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000557040		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000423488	ENST00000553449		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000423488	ENST00000554713		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000286953		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000554880		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000555030		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000414262		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000553430		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000557040		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000555391	ENST00000553449		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000555391	ENST00000554713		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
5CDS-5UTR	ENST00000370355	ENST00000332427		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SCD	chr10	102108103	+	GPR19	chr12	12815404	-
5CDS-intron	ENST00000370355	ENST00000537507		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SCD	chr10	102108103	+	GPR19	chr12	12815404	-
5CDS-5UTR	ENST00000370355	ENST00000540510		TCGA	RV	BRCA	TCGA-A8-A07I-01A	SCD	chr10	102108103	+	GPR19	chr12	12815404	-
In-frame	ENST00000377636	ENST00000406936		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377636	ENST00000377615		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377636	ENST00000377619		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377636	ENST00000355801		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5CDS-5UTR	ENST00000377636	ENST00000460675		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000431480	ENST00000406936		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000431480	ENST00000377615		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000431480	ENST00000377619		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000431480	ENST00000355801		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5CDS-5UTR	ENST00000431480	ENST00000460675		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5UTR-3CDS	ENST00000425511	ENST00000406936		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5UTR-3CDS	ENST00000425511	ENST00000377615		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5UTR-3CDS	ENST00000425511	ENST00000377619		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5UTR-3CDS	ENST00000425511	ENST00000355801		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5UTR-5UTR	ENST00000425511	ENST00000460675		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377625	ENST00000406936		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377625	ENST00000377615		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377625	ENST00000377619		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
In-frame	ENST00000377625	ENST00000355801		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
5CDS-5UTR	ENST00000377625	ENST00000460675		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
intron-3CDS	ENST00000478591	ENST00000406936		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
intron-3CDS	ENST00000478591	ENST00000377615		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
intron-3CDS	ENST00000478591	ENST00000377619		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
intron-3CDS	ENST00000478591	ENST00000355801		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
intron-5UTR	ENST00000478591	ENST00000460675		TCGA	RV	BRCA	TCGA-OL-A5S0-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76104402	-
Frame-shit	ENST00000262919	ENST00000336095		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000262919	ENST00000358395		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000262919	ENST00000432261		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000262919	ENST00000545616		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000446916	ENST00000336095		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000446916	ENST00000358395		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000446916	ENST00000432261		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
Frame-shit	ENST00000446916	ENST00000545616		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	ATRN	chr20	3557644	+	RNF24	chr20	3915720	-
In-frame	ENST00000374183	ENST00000517671		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
Frame-shit	ENST00000374183	ENST00000296930		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
Frame-shit	ENST00000374183	ENST00000351986		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
5CDS-intron	ENST00000374183	ENST00000393820		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
3UTR-3CDS	ENST00000462085	ENST00000517671		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
3UTR-3CDS	ENST00000462085	ENST00000296930		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
3UTR-3CDS	ENST00000462085	ENST00000351986		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
3UTR-intron	ENST00000462085	ENST00000393820		TCGA	RV	BRCA	TCGA-LL-A5YO-01A	BSPRY	chr9	116123017	+	NPM1	chr5	170837531	+
Frame-shit	ENST00000335255	ENST00000336915		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	FOXK2	chr17	80545148	+	SKAP1	chr17	46474147	-
In-frame	ENST00000335255	ENST00000584924		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	FOXK2	chr17	80545148	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000529652	ENST00000336915		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	FOXK2	chr17	80545148	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000529652	ENST00000584924		TCGA	RV	BRCA	TCGA-AO-A0JG-01A	FOXK2	chr17	80545148	+	SKAP1	chr17	46474147	-
In-frame	ENST00000253925	ENST00000255559		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
In-frame	ENST00000253925	ENST00000542342		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000253925	ENST00000579988		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000253925	ENST00000579732		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
In-frame	ENST00000389547	ENST00000255559		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
In-frame	ENST00000389547	ENST00000542342		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000389547	ENST00000579988		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000389547	ENST00000579732		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
intron-3CDS	ENST00000530548	ENST00000255559		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
intron-3CDS	ENST00000530548	ENST00000542342		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
intron-intron	ENST00000530548	ENST00000579988		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
intron-intron	ENST00000530548	ENST00000579732		TCGA	RV	BRCA	TCGA-BH-A0DD-01A	PPFIA1	chr11	70172924	+	SLC39A11	chr17	71027853	-
In-frame	ENST00000449833	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000449833	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000449833	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
In-frame	ENST00000409161	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000409161	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000409161	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
In-frame	ENST00000423696	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000423696	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000423696	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
In-frame	ENST00000338508	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000338508	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000338508	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
In-frame	ENST00000409530	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000409530	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000409530	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
In-frame	ENST00000449116	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000449116	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000449116	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
In-frame	ENST00000357171	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000357171	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000357171	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
intron-3CDS	ENST00000468619	ENST00000350638		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
intron-3CDS	ENST00000468619	ENST00000379163		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
intron-3CDS	ENST00000468619	ENST00000395934		TCGA	RV	BRCA	TCGA-E2-A106-01A	SHANK2	chr11	70505933	-	ELP4	chr11	31804941	+
Frame-shit	ENST00000397843	ENST00000375300		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
Frame-shit	ENST00000397843	ENST00000292055		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000397843	ENST00000375288		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000397843	ENST00000434315		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000397843	ENST00000542607		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000397843	ENST00000446921		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-intron	ENST00000397843	ENST00000488337		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
Frame-shit	ENST00000356641	ENST00000375300		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
Frame-shit	ENST00000356641	ENST00000292055		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000356641	ENST00000375288		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000356641	ENST00000434315		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000356641	ENST00000542607		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-5UTR	ENST00000356641	ENST00000446921		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5CDS-intron	ENST00000356641	ENST00000488337		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-3CDS	ENST00000532993	ENST00000375300		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-3CDS	ENST00000532993	ENST00000292055		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000532993	ENST00000375288		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000532993	ENST00000434315		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000532993	ENST00000542607		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-5UTR	ENST00000532993	ENST00000446921		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
intron-intron	ENST00000532993	ENST00000488337		TCGA	RV	BRCA	TCGA-A8-A09G-01A	ARHGEF12	chr11	120207984	+	SIK3	chr11	116827780	-
5UTR-3CDS	ENST00000359676	ENST00000278980		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
5UTR-3CDS	ENST00000359676	ENST00000446419		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
5UTR-3CDS	ENST00000475781	ENST00000278980		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
5UTR-3CDS	ENST00000475781	ENST00000446419		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
5UTR-3CDS	ENST00000326071	ENST00000278980		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
5UTR-3CDS	ENST00000326071	ENST00000446419		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000375677	ENST00000278980		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000375677	ENST00000446419		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000375678	ENST00000278980		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000375678	ENST00000446419		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000201961	ENST00000278980		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000201961	ENST00000446419		TCGA	RV	BRCA	TCGA-E9-A5UP-01A	C20orf112	chr20	31071165	-	COMMD7	chr20	31315949	-
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000317501		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000558306		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000540489		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000317501		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000558306		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000540489		TCGA	RV	BRCA	TCGA-AO-A03U-01B	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000356341	ENST00000353172		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-5UTR	ENST00000356341	ENST00000533144		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-intron	ENST00000530617	ENST00000353172		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-5UTR	ENST00000530617	ENST00000533144		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-intron	ENST00000278568	ENST00000353172		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-5UTR	ENST00000278568	ENST00000533144		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-intron	ENST00000528203	ENST00000353172		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
5CDS-5UTR	ENST00000528203	ENST00000533144		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
intron-intron	ENST00000525542	ENST00000353172		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
intron-5UTR	ENST00000525542	ENST00000533144		TCGA	RV	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77749804	-
Frame-shit	ENST00000545664	ENST00000269812		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
5CDS-5UTR	ENST00000545664	ENST00000434325		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
5CDS-5UTR	ENST00000545664	ENST00000327790		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
Frame-shit	ENST00000269740	ENST00000269812		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
5CDS-5UTR	ENST00000269740	ENST00000434325		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
5CDS-5UTR	ENST00000269740	ENST00000327790		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
intron-3CDS	ENST00000455372	ENST00000269812		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
intron-5UTR	ENST00000455372	ENST00000434325		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
intron-5UTR	ENST00000455372	ENST00000327790		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
intron-3CDS	ENST00000590875	ENST00000269812		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
intron-5UTR	ENST00000590875	ENST00000434325		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
intron-5UTR	ENST00000590875	ENST00000327790		TCGA	RV	BRCA	TCGA-A7-A13E-01A	SLC39A3	chr19	2737046	-	PPAP2C	chr19	288171	-
In-frame	ENST00000265354	ENST00000367796		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	SRF	chr6	43141851	+	F5	chr1	169483697	-
In-frame	ENST00000265354	ENST00000367797		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	SRF	chr6	43141851	+	F5	chr1	169483697	-
5CDS-intron	ENST00000265354	ENST00000546081		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	SRF	chr6	43141851	+	F5	chr1	169483697	-
In-frame	ENST00000457278	ENST00000367796		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	SRF	chr6	43141851	+	F5	chr1	169483697	-
In-frame	ENST00000457278	ENST00000367797		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	SRF	chr6	43141851	+	F5	chr1	169483697	-
5CDS-intron	ENST00000457278	ENST00000546081		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	SRF	chr6	43141851	+	F5	chr1	169483697	-
5CDS-5UTR	ENST00000373825	ENST00000535924		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373825	ENST00000483110		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373825	ENST00000284031		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373825	ENST00000539042		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373825	ENST00000426972		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373825	ENST00000542148		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000423325	ENST00000535924		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000423325	ENST00000483110		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000423325	ENST00000284031		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000423325	ENST00000539042		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000423325	ENST00000426972		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000423325	ENST00000542148		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373822	ENST00000535924		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373822	ENST00000483110		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373822	ENST00000284031		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373822	ENST00000539042		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373822	ENST00000426972		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000373822	ENST00000542148		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
intron-5UTR	ENST00000373821	ENST00000535924		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
intron-5UTR	ENST00000373821	ENST00000483110		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
intron-5UTR	ENST00000373821	ENST00000284031		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
intron-5UTR	ENST00000373821	ENST00000539042		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
intron-5UTR	ENST00000373821	ENST00000426972		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
intron-5UTR	ENST00000373821	ENST00000542148		TCGA	RV	BRCA	TCGA-BH-A5IZ-01A	SRPK1	chr6	35836787	-	DDAH1	chr1	85824530	-
Frame-shit	ENST00000276569	ENST00000025008		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
Frame-shit	ENST00000276569	ENST00000435644		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
5CDS-intron	ENST00000276569	ENST00000521611		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
5CDS-intron	ENST00000276569	ENST00000539297		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
In-frame	ENST00000458464	ENST00000025008		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
In-frame	ENST00000458464	ENST00000435644		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
5CDS-intron	ENST00000458464	ENST00000521611		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
5CDS-intron	ENST00000458464	ENST00000539297		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
intron-3CDS	ENST00000523384	ENST00000025008		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
intron-3CDS	ENST00000523384	ENST00000435644		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
intron-intron	ENST00000523384	ENST00000521611		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
intron-intron	ENST00000523384	ENST00000539297		TCGA	RV	BRCA	TCGA-C8-A1HN-01A	ARMC1	chr8	66534498	-	RB1CC1	chr8	53547528	-
intron-3CDS	ENST00000443572	ENST00000508628		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000443572	ENST00000456466		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000443572	ENST00000582970		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000443572	ENST00000319921		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000443572	ENST00000336301		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000443572	ENST00000427003		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-3CDS	ENST00000406116	ENST00000508628		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000406116	ENST00000456466		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000406116	ENST00000582970		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000406116	ENST00000319921		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000406116	ENST00000336301		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000406116	ENST00000427003		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-3CDS	ENST00000225577	ENST00000508628		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000225577	ENST00000456466		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000225577	ENST00000582970		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000225577	ENST00000319921		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000225577	ENST00000336301		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000225577	ENST00000427003		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
5UTR-3CDS	ENST00000393021	ENST00000508628		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
5UTR-intron	ENST00000393021	ENST00000456466		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
5UTR-intron	ENST00000393021	ENST00000582970		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
5UTR-intron	ENST00000393021	ENST00000319921		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
5UTR-intron	ENST00000393021	ENST00000336301		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
5UTR-intron	ENST00000393021	ENST00000427003		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-3CDS	ENST00000587061	ENST00000508628		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000587061	ENST00000456466		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000587061	ENST00000582970		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000587061	ENST00000319921		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000587061	ENST00000336301		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-intron	ENST00000587061	ENST00000427003		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	RPS6KB1	chr17	57971285	+	RNF213	chr17	78345674	+
intron-3CDS	ENST00000407228	ENST00000566044		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
intron-3CDS	ENST00000407228	ENST00000455779		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
intron-3CDS	ENST00000407228	ENST00000299167		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
intron-3CDS	ENST00000407228	ENST00000323584		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
intron-intron	ENST00000407228	ENST00000567402		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
Frame-shit	ENST00000219746	ENST00000566044		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
Frame-shit	ENST00000219746	ENST00000455779		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
Frame-shit	ENST00000219746	ENST00000299167		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
Frame-shit	ENST00000219746	ENST00000323584		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
5CDS-intron	ENST00000219746	ENST00000567402		TCGA	RV	BRCA	TCGA-E9-A247-01A	TOX3	chr16	52580549	-	PHKB	chr16	47644737	+
5UTR-3CDS	ENST00000392446	ENST00000264639		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-intron	ENST00000392446	ENST00000541736		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-3CDS	ENST00000302345	ENST00000264639		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-intron	ENST00000302345	ENST00000541736		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-3CDS	ENST00000591773	ENST00000264639		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-intron	ENST00000591773	ENST00000541736		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-3CDS	ENST00000591732	ENST00000264639		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
5UTR-intron	ENST00000591732	ENST00000541736		TCGA	RV	BRCA	TCGA-C8-A135-01A	CANT1	chr17	77005746	-	PSMD3	chr17	38140547	+
Frame-shit	ENST00000217402	ENST00000342704		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
In-frame	ENST00000217402	ENST00000375279		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000344201		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000397798		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000346541		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000397800		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000492345		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000359606		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000491618		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000217402	ENST00000543126		TCGA	RV	BRCA	TCGA-AR-A256-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000520468	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000520468	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000520468	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000297564	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000297564	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000297564	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000520271	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000520271	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000520271	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000517682	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000517682	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000517682	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000524245	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000524245	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000524245	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000522940	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000522940	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000522940	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000518171	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000518171	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000518171	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000523016	ENST00000233057		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000523016	ENST00000395127		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000523016	ENST00000405334		TCGA	RV	BRCA	TCGA-E9-A1RD-01A	COX6C	chr8	100890379	-	EIF2AK2	chr2	37342384	-
intron-5UTR	ENST00000443950	ENST00000308448		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000443950	ENST00000328142		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000443950	ENST00000400215		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000443950	ENST00000541004		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000443950	ENST00000495903		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000544000	ENST00000308448		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000544000	ENST00000328142		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000544000	ENST00000400215		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000544000	ENST00000541004		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000544000	ENST00000495903		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000357065	ENST00000308448		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000357065	ENST00000328142		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000357065	ENST00000400215		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000357065	ENST00000541004		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000357065	ENST00000495903		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000356053	ENST00000308448		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000356053	ENST00000328142		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000356053	ENST00000400215		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000356053	ENST00000541004		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000356053	ENST00000495903		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000337970	ENST00000308448		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000337970	ENST00000328142		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000337970	ENST00000400215		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000337970	ENST00000541004		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000337970	ENST00000495903		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000498176	ENST00000308448		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000498176	ENST00000328142		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000498176	ENST00000400215		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000498176	ENST00000541004		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000498176	ENST00000495903		TCGA	RV	BRCA	TCGA-AC-A3EH-01A	HNRNPF	chr10	43904579	-	ATAD1	chr10	89574369	-
5UTR-3CDS	ENST00000356341	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000356341	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000356341	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000356341	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000356341	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000356341	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000356341	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-intron	ENST00000356341	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000530617	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-intron	ENST00000530617	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-3CDS	ENST00000278568	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
5UTR-intron	ENST00000278568	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000528203	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-intron	ENST00000528203	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000449833		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000409161		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000423696		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000338508		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000409530		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000449116		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000525542	ENST00000357171		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-intron	ENST00000525542	ENST00000468619		TCGA	RV	BRCA	TCGA-XX-A899-01A	PAK1	chr11	77184597	-	SHANK2	chr11	70507783	-
intron-3CDS	ENST00000477593	ENST00000471595		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000478469		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000251654		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000483687		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000490504		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000466072		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000482086		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000468777		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000462637		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000477593	ENST00000469217		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3UTR	ENST00000477593	ENST00000474833		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000471595		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000478469		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000251654		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000483687		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000490504		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000466072		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000482086		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000468777		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000462637		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000544716	ENST00000469217		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3UTR	ENST00000544716	ENST00000474833		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000471595		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000478469		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000251654		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000483687		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000490504		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000466072		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000482086		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000468777		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000462637		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000289153	ENST00000469217		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
intron-3UTR	ENST00000289153	ENST00000474833		TCGA	RV	BRCA	TCGA-EW-A3E8-01B	PIK3CB	chr3	138515305	-	PCCB	chr3	136002679	+
Frame-shit	ENST00000608083	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
Frame-shit	ENST00000608083	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
Frame-shit	ENST00000608083	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
5CDS-3UTR	ENST00000608083	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377855	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377855	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377855	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3UTR	ENST00000377855	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
5UTR-3CDS	ENST00000545482	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
5UTR-3CDS	ENST00000545482	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
5UTR-3CDS	ENST00000545482	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
5UTR-3UTR	ENST00000545482	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
Frame-shit	ENST00000361521	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
Frame-shit	ENST00000361521	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
Frame-shit	ENST00000361521	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
5CDS-3UTR	ENST00000361521	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377842	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377842	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377842	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3UTR	ENST00000377842	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377845	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377845	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000377845	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3UTR	ENST00000377845	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000541130	ENST00000287437		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000541130	ENST00000522563		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3CDS	ENST00000541130	ENST00000517315		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
intron-3UTR	ENST00000541130	ENST00000521460		TCGA	RV	BRCA	TCGA-A2-A0T1-01A	ACOT7	chr1	6453317	-	NSMCE2	chr8	126379010	+
In-frame	ENST00000401084	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000401084	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000401084	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
5CDS-intron	ENST00000401084	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-3CDS	ENST00000264203	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-3CDS	ENST00000264203	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-3CDS	ENST00000264203	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-intron	ENST00000264203	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
Frame-shit	ENST00000375142	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
Frame-shit	ENST00000375142	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
Frame-shit	ENST00000375142	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
5CDS-intron	ENST00000375142	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000433834	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000433834	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000433834	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
5CDS-intron	ENST00000433834	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000264202	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000264202	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000264202	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
5CDS-intron	ENST00000264202	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-3CDS	ENST00000482808	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-3CDS	ENST00000482808	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-3CDS	ENST00000482808	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
intron-intron	ENST00000482808	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000375144	ENST00000535157		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000375144	ENST00000377246		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000375144	ENST00000349847		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
5CDS-intron	ENST00000375144	ENST00000469982		TCGA	RV	BRCA	TCGA-E2-A573-01A	CAPZB	chr1	19670852	-	SCEL	chr13	78208514	+
In-frame	ENST00000225972	ENST00000262013		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
In-frame	ENST00000225972	ENST00000505279		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
In-frame	ENST00000225972	ENST00000357122		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
5CDS-intron	ENST00000225972	ENST00000509724		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
5CDS-intron	ENST00000225972	ENST00000510283		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
intron-3CDS	ENST00000576448	ENST00000262013		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
intron-3CDS	ENST00000576448	ENST00000505279		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
intron-3CDS	ENST00000576448	ENST00000357122		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
intron-intron	ENST00000576448	ENST00000509724		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
intron-intron	ENST00000576448	ENST00000510283		TCGA	RV	BRCA	TCGA-E9-A1NC-01A	LRRC59	chr17	48469759	-	SPAG9	chr17	49057278	-
Frame-shit	ENST00000586178	ENST00000409709		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000586178	ENST00000409893		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000586178	ENST00000458637		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000586178	ENST00000409619		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000586178	ENST00000605744		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
In-frame	ENST00000415868	ENST00000409709		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000415868	ENST00000409893		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000415868	ENST00000458637		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000415868	ENST00000409619		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000415868	ENST00000605744		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
Frame-shit	ENST00000376381	ENST00000409709		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000376381	ENST00000409893		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000376381	ENST00000458637		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000376381	ENST00000409619		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
5CDS-intron	ENST00000376381	ENST00000605744		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
intron-3CDS	ENST00000593259	ENST00000409709		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
intron-intron	ENST00000593259	ENST00000409893		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
intron-intron	ENST00000593259	ENST00000458637		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
intron-intron	ENST00000593259	ENST00000409619		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
intron-intron	ENST00000593259	ENST00000605744		TCGA	RV	BRCA	TCGA-A8-A079-01A	MBTD1	chr17	49294695	-	MYO7A	chr11	76903096	+
In-frame	ENST00000275262	ENST00000337019		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000275262	ENST00000366889		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000275262	ENST00000366888		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000275262	ENST00000542669		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000392127	ENST00000337019		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000392127	ENST00000366889		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000392127	ENST00000366888		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000392127	ENST00000542669		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000453779	ENST00000337019		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000453779	ENST00000366889		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000453779	ENST00000366888		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000453779	ENST00000542669		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361752	ENST00000337019		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361752	ENST00000366889		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361752	ENST00000366888		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361752	ENST00000542669		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361195	ENST00000337019		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361195	ENST00000366889		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361195	ENST00000366888		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361195	ENST00000542669		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000424802	ENST00000337019		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000424802	ENST00000366889		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000424802	ENST00000366888		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000424802	ENST00000542669		TCGA	RV	BRCA	TCGA-E9-A1ND-01A	QKI	chr6	163899928	+	PACRG	chr6	163483182	+
In-frame	ENST00000361756	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000361756	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000361756	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000361756	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000361756	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000361756	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000361756	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000533380	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000533380	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000533380	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000533380	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000533380	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000533380	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000533380	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000393713	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000393713	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000393713	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000393713	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000393713	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000393713	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000393713	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-3CDS	ENST00000490867	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-3CDS	ENST00000490867	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-3CDS	ENST00000490867	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-3CDS	ENST00000490867	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-intron	ENST00000490867	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-intron	ENST00000490867	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
3UTR-intron	ENST00000490867	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000545854	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000545854	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000545854	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000545854	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-intron	ENST00000545854	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-intron	ENST00000545854	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5UTR-intron	ENST00000545854	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000530137	ENST00000257261		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000530137	ENST00000522056		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000530137	ENST00000278840		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
In-frame	ENST00000530137	ENST00000521849		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000530137	ENST00000574708		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000530137	ENST00000522639		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
5CDS-intron	ENST00000530137	ENST00000517839		TCGA	RV	BRCA	TCGA-E9-A1N5-01A	RNF121	chr11	71671937	+	FADS2	chr11	61624483	+
Frame-shit	ENST00000221566	ENST00000317306		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SGTA	chr19	2762504	-	INSL3	chr19	17927868	-
In-frame	ENST00000221566	ENST00000379695		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SGTA	chr19	2762504	-	INSL3	chr19	17927868	-
intron-3CDS	ENST00000586711	ENST00000317306		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SGTA	chr19	2762504	-	INSL3	chr19	17927868	-
intron-3CDS	ENST00000586711	ENST00000379695		TCGA	RV	BRCA	TCGA-AC-A8OP-01A	SGTA	chr19	2762504	-	INSL3	chr19	17927868	-
In-frame	ENST00000219473	ENST00000465878		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000379655		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000445690		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000421376		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000541240		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000540079		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000543930		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000562903		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000219473	ENST00000539578		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
5CDS-intron	ENST00000219473	ENST00000566975		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000465878		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000379655		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000445690		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000421376		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000541240		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000540079		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000543930		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000562903		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000570191	ENST00000539578		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
5CDS-intron	ENST00000570191	ENST00000566975		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000465878		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000379655		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000445690		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000421376		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000541240		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000540079		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000543930		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000562903		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-3CDS	ENST00000562743	ENST00000539578		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
3UTR-intron	ENST00000562743	ENST00000566975		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	USP10	chr16	84767109	+	KIFC3	chr16	57800897	-
In-frame	ENST00000294016	ENST00000436648		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
In-frame	ENST00000294016	ENST00000321919		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
In-frame	ENST00000294016	ENST00000381983		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
In-frame	ENST00000294016	ENST00000591451		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
5CDS-intron	ENST00000294016	ENST00000586901		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
intron-3CDS	ENST00000571889	ENST00000436648		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
intron-3CDS	ENST00000571889	ENST00000321919		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
intron-3CDS	ENST00000571889	ENST00000381983		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
intron-3CDS	ENST00000571889	ENST00000591451		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
intron-intron	ENST00000571889	ENST00000586901		TCGA	RV	BRCA	TCGA-E9-A1RH-01A	ADCY9	chr16	4038995	-	GLYR1	chr16	4862249	-
5CDS-3UTR	ENST00000263102	ENST00000280772		TCGA	RV	BRCA	TCGA-EW-A1P4-01A	CCDC6	chr10	61574410	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000373827		TCGA	RV	BRCA	TCGA-EW-A1P4-01A	CCDC6	chr10	61574410	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000355288		TCGA	RV	BRCA	TCGA-EW-A1P4-01A	CCDC6	chr10	61574410	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000503366		TCGA	RV	BRCA	TCGA-EW-A1P4-01A	CCDC6	chr10	61574410	-	ANK3	chr10	61789584	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	BRCA	TCGA-EW-A1P4-01A	CCDC6	chr10	61574410	-	ANK3	chr10	61789584	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	BRCA	TCGA-EW-A1P4-01A	CCDC6	chr10	61574410	-	ANK3	chr10	61789584	-
In-frame	ENST00000378017	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000378017	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000378017	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000378017	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5CDS-intron	ENST00000378017	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000518547	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000518547	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000518547	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000518547	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5CDS-intron	ENST00000518547	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5UTR-3CDS	ENST00000354184	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5UTR-3CDS	ENST00000354184	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5UTR-3CDS	ENST00000354184	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5UTR-3CDS	ENST00000354184	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5UTR-intron	ENST00000354184	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000395508	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000395508	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000395508	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000395508	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-intron	ENST00000395508	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000325064	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000325064	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000325064	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
In-frame	ENST00000325064	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5CDS-intron	ENST00000325064	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000431961	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000431961	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000431961	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000431961	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-intron	ENST00000431961	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000523587	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000523587	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000523587	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000523587	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-intron	ENST00000523587	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000524090	ENST00000399640		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000524090	ENST00000319914		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000524090	ENST00000521180		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-3CDS	ENST00000524090	ENST00000522652		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
intron-intron	ENST00000524090	ENST00000519435		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	MTSS1	chr8	125740125	-	ST3GAL1	chr8	134478333	-
5UTR-3CDS	ENST00000282516	ENST00000264451		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	NIPBL	chr5	36877280	+	SLC30A9	chr4	42062208	+
5UTR-3CDS	ENST00000448238	ENST00000264451		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	NIPBL	chr5	36877280	+	SLC30A9	chr4	42062208	+
intron-3CDS	ENST00000504430	ENST00000264451		TCGA	RV	BRCA	TCGA-A7-A6VV-01A	NIPBL	chr5	36877280	+	SLC30A9	chr4	42062208	+
Frame-shit	ENST00000374820	ENST00000589222		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000374820	ENST00000407086		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000374820	ENST00000390652		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000374820	ENST00000408905		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000374820	ENST00000588462		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000374820	ENST00000585744		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000374820	ENST00000588874		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000374820	ENST00000585812		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000589222		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000407086		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000390652		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000408905		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000588462		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000585744		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000452740	ENST00000588874		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000452740	ENST00000585812		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000589222		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000407086		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000390652		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000408905		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000588462		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000585744		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000480175	ENST00000588874		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
intron-3UTR	ENST00000480175	ENST00000585812		TCGA	RV	BRCA	TCGA-AC-A62V-01A	PIGU	chr20	33231968	-	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000383791	ENST00000443029		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000383791	ENST00000383790		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000383791	ENST00000450816		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000383791	ENST00000383789		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5CDS-5UTR	ENST00000383791	ENST00000584799		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000253688	ENST00000443029		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000253688	ENST00000383790		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000253688	ENST00000450816		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000253688	ENST00000383789		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000253688	ENST00000584799		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000426925	ENST00000443029		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000426925	ENST00000383790		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000426925	ENST00000450816		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000426925	ENST00000383789		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000426925	ENST00000584799		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000408919	ENST00000443029		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000408919	ENST00000383790		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000408919	ENST00000450816		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000408919	ENST00000383789		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000408919	ENST00000584799		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000465894	ENST00000443029		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000465894	ENST00000383790		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000465894	ENST00000450816		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000465894	ENST00000383789		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000465894	ENST00000584799		TCGA	RV	BRCA	TCGA-C8-A134-01A	SH3BP5	chr3	15345610	-	METTL6	chr3	15425694	-
In-frame	ENST00000393651	ENST00000356362		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
In-frame	ENST00000393651	ENST00000469408		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
intron-3CDS	ENST00000357311	ENST00000356362		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
intron-3CDS	ENST00000357311	ENST00000469408		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
intron-3CDS	ENST00000489828	ENST00000356362		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
intron-3CDS	ENST00000489828	ENST00000469408		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
intron-3CDS	ENST00000493638	ENST00000356362		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
intron-3CDS	ENST00000493638	ENST00000469408		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105112640	-
In-frame	ENST00000261772	ENST00000342907		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70303521	-	ST3GAL2	chr16	70415765	-
Frame-shit	ENST00000261772	ENST00000393640		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70303521	-	ST3GAL2	chr16	70415765	-
5CDS-intron	ENST00000261772	ENST00000566097		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70303521	-	ST3GAL2	chr16	70415765	-
intron-3CDS	ENST00000564359	ENST00000342907		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70303521	-	ST3GAL2	chr16	70415765	-
intron-3CDS	ENST00000564359	ENST00000393640		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70303521	-	ST3GAL2	chr16	70415765	-
intron-intron	ENST00000564359	ENST00000566097		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70303521	-	ST3GAL2	chr16	70415765	-
In-frame	ENST00000340990	ENST00000483095		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
In-frame	ENST00000340990	ENST00000258302		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
In-frame	ENST00000340990	ENST00000367557		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
In-frame	ENST00000340990	ENST00000367556		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
5CDS-intron	ENST00000340990	ENST00000491420		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
Frame-shit	ENST00000436244	ENST00000483095		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
Frame-shit	ENST00000436244	ENST00000258302		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
Frame-shit	ENST00000436244	ENST00000367557		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
Frame-shit	ENST00000436244	ENST00000367556		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
5CDS-intron	ENST00000436244	ENST00000491420		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
intron-3CDS	ENST00000367254	ENST00000483095		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
intron-3CDS	ENST00000367254	ENST00000258302		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
intron-3CDS	ENST00000367254	ENST00000367557		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
intron-3CDS	ENST00000367254	ENST00000367556		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
intron-intron	ENST00000367254	ENST00000491420		TCGA	RV	BRCA	TCGA-E9-A243-01A	ADIPOR1	chr1	202912886	-	RGS8	chr1	182617438	-
In-frame	ENST00000371694	ENST00000439374		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
In-frame	ENST00000371694	ENST00000540998		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
In-frame	ENST00000371694	ENST00000357235		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
5CDS-5UTR	ENST00000371694	ENST00000492796		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
In-frame	ENST00000371696	ENST00000439374		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
In-frame	ENST00000371696	ENST00000540998		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
In-frame	ENST00000371696	ENST00000357235		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
5CDS-5UTR	ENST00000371696	ENST00000492796		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
Frame-shit	ENST00000538402	ENST00000439374		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
Frame-shit	ENST00000538402	ENST00000540998		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
Frame-shit	ENST00000538402	ENST00000357235		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
5CDS-5UTR	ENST00000538402	ENST00000492796		TCGA	RV	BRCA	TCGA-BH-A0C0-01A	AGPAT2	chr9	139571413	-	CDC42SE1	chr1	151027602	-
Frame-shit	ENST00000301607	ENST00000590474		TCGA	RV	BRCA	TCGA-E2-A109-01A	EVPL	chr17	74023182	-	MAP2K6	chr17	67501921	+
5CDS-5UTR	ENST00000301607	ENST00000589647		TCGA	RV	BRCA	TCGA-E2-A109-01A	EVPL	chr17	74023182	-	MAP2K6	chr17	67501921	+
Frame-shit	ENST00000586740	ENST00000590474		TCGA	RV	BRCA	TCGA-E2-A109-01A	EVPL	chr17	74023182	-	MAP2K6	chr17	67501921	+
5CDS-5UTR	ENST00000586740	ENST00000589647		TCGA	RV	BRCA	TCGA-E2-A109-01A	EVPL	chr17	74023182	-	MAP2K6	chr17	67501921	+
5CDS-5UTR	ENST00000370551	ENST00000262746		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370551	ENST00000319248		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370551	ENST00000372079		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370551	ENST00000483583		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370550	ENST00000262746		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370550	ENST00000319248		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370550	ENST00000372079		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
5CDS-5UTR	ENST00000370550	ENST00000483583		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000356813	ENST00000262746		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000356813	ENST00000319248		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000356813	ENST00000372079		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000356813	ENST00000483583		TCGA	RV	BRCA	TCGA-A2-A0YE-01A	HS2ST1	chr1	87380843	+	PRDX1	chr1	45984726	-
In-frame	ENST00000373664	ENST00000352393		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000373664	ENST00000317677		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000373664	ENST00000397445		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000373664	ENST00000317619		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000373664	ENST00000397443		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000373664	ENST00000397446		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000373664	ENST00000397442		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
5CDS-intron	ENST00000373664	ENST00000475146		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000352393		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000317677		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000397445		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000317619		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000397443		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000397446		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
In-frame	ENST00000344359	ENST00000397442		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
5CDS-intron	ENST00000344359	ENST00000475146		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000352393		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000317677		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000397445		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000317619		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000397443		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000397446		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-3CDS	ENST00000598590	ENST00000397442		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
intron-intron	ENST00000598590	ENST00000475146		TCGA	RV	BRCA	TCGA-C8-A134-01A	RBL1	chr20	35724176	-	CPNE1	chr20	34220845	-
5UTR-3CDS	ENST00000333090	ENST00000436072		TCGA	RV	BRCA	TCGA-A8-A091-01A	TSKU	chr11	76494448	+	SFRP4	chr7	37954055	-
intron-3CDS	ENST00000527881	ENST00000436072		TCGA	RV	BRCA	TCGA-A8-A091-01A	TSKU	chr11	76494448	+	SFRP4	chr7	37954055	-
In-frame	ENST00000346141	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
In-frame	ENST00000346141	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
5CDS-intron	ENST00000346141	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
In-frame	ENST00000325752	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
In-frame	ENST00000325752	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
5CDS-intron	ENST00000325752	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
In-frame	ENST00000340993	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
In-frame	ENST00000340993	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
5CDS-intron	ENST00000340993	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-3CDS	ENST00000394239	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-3CDS	ENST00000394239	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-intron	ENST00000394239	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
Frame-shit	ENST00000592426	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
Frame-shit	ENST00000592426	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
5CDS-intron	ENST00000592426	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-3CDS	ENST00000376094	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-3CDS	ENST00000376094	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-intron	ENST00000376094	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
Frame-shit	ENST00000539018	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
Frame-shit	ENST00000539018	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
5CDS-intron	ENST00000539018	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-3CDS	ENST00000591611	ENST00000430627		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-3CDS	ENST00000591611	ENST00000447079		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
intron-intron	ENST00000591611	ENST00000559545		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TUBD1	chr17	57943970	-	CDK12	chr17	37667782	+
5UTR-3CDS	ENST00000541730	ENST00000368682		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000354650		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000229471		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000368667		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000368678		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000229470		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000356013		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-3CDS	ENST00000541730	ENST00000538466		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5UTR-intron	ENST00000541730	ENST00000476769		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000324607	ENST00000368682		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000324607	ENST00000354650		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000324607	ENST00000229471		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000324607	ENST00000368667		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000324607	ENST00000368678		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000324607	ENST00000229470		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000324607	ENST00000356013		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000324607	ENST00000538466		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5CDS-intron	ENST00000324607	ENST00000476769		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000536798	ENST00000368682		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000536798	ENST00000354650		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000536798	ENST00000229471		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000536798	ENST00000368667		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000536798	ENST00000368678		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000536798	ENST00000229470		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
In-frame	ENST00000536798	ENST00000356013		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000536798	ENST00000538466		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
5CDS-intron	ENST00000536798	ENST00000476769		TCGA	RV	BRCA	TCGA-OL-A6VO-01A	MBOAT1	chr6	20212367	-	FYN	chr6	111983150	-
Frame-shit	ENST00000406091	ENST00000309982		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000438105		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000297574		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000330955		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000306391		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000406091	ENST00000523754		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000262231	ENST00000309982		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000438105		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000297574		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000330955		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000306391		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000262231	ENST00000523754		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000507740	ENST00000309982		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000438105		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000297574		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000330955		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000306391		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000507740	ENST00000523754		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000522174	ENST00000309982		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000438105		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000297574		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000330955		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000306391		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000522174	ENST00000523754		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000436393	ENST00000309982		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000438105		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000297574		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000330955		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000306391		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000436393	ENST00000523754		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000339750	ENST00000309982		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000438105		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000297574		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000330955		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000306391		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
intron-intron	ENST00000339750	ENST00000523754		TCGA	RV	BRCA	TCGA-BH-A18V-06A	RIMS2	chr8	104513290	+	BAALC	chr8	104225147	+
5CDS-5UTR	ENST00000299563	ENST00000258947		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	RNF169	chr11	74528759	+	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000299563	ENST00000509507		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	RNF169	chr11	74528759	+	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000299563	ENST00000448105		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	RNF169	chr11	74528759	+	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000299563	ENST00000416445		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	RNF169	chr11	74528759	+	CALCOCO2	chr17	46919060	+
5CDS-intron	ENST00000299563	ENST00000508679		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	RNF169	chr11	74528759	+	CALCOCO2	chr17	46919060	+
5CDS-intron	ENST00000299563	ENST00000510997		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	RNF169	chr11	74528759	+	CALCOCO2	chr17	46919060	+
5UTR-5UTR	ENST00000317025	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000317025	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000317025	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000433384	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000433384	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000433384	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000527502	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000527502	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000527502	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000316985	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000316985	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
5UTR-5UTR	ENST00000316985	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000525081	ENST00000340149		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000525081	ENST00000361507		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000525081	ENST00000526030		TCGA	RV	BRCA	TCGA-AO-A1KT-01A	WHSC1L1	chr8	38239317	-	GAB2	chr11	77991947	-
intron-3CDS	ENST00000593699	ENST00000388768		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000593699	ENST00000602465		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000593699	ENST00000265865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000593699	ENST00000399200		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000593699	ENST00000454950		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000593699	ENST00000472394		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000593699	ENST00000342616		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000372499	ENST00000388768		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000372499	ENST00000602465		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000372499	ENST00000265865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000372499	ENST00000399200		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000372499	ENST00000454950		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000372499	ENST00000472394		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000372499	ENST00000342616		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000496424	ENST00000388768		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000496424	ENST00000602465		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000496424	ENST00000265865		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000496424	ENST00000399200		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000496424	ENST00000454950		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000496424	ENST00000472394		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-intron	ENST00000496424	ENST00000342616		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	C10orf11	chr10	77198252	+	RUFY2	chr10	70123870	-
intron-3CDS	ENST00000430710	ENST00000405508		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-3CDS	ENST00000430710	ENST00000262709		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-3CDS	ENST00000430710	ENST00000448790		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-intron	ENST00000430710	ENST00000494242		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
In-frame	ENST00000399982	ENST00000405508		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
In-frame	ENST00000399982	ENST00000262709		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
In-frame	ENST00000399982	ENST00000448790		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
5CDS-intron	ENST00000399982	ENST00000494242		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
Frame-shit	ENST00000557364	ENST00000405508		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
Frame-shit	ENST00000557364	ENST00000262709		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
Frame-shit	ENST00000557364	ENST00000448790		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
5CDS-intron	ENST00000557364	ENST00000494242		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-3CDS	ENST00000555962	ENST00000405508		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-3CDS	ENST00000555962	ENST00000262709		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-3CDS	ENST00000555962	ENST00000448790		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
intron-intron	ENST00000555962	ENST00000494242		TCGA	RV	BRCA	TCGA-AO-A128-01A	CHD8	chr14	21898960	-	TOX4	chr14	21957332	+
Frame-shit	ENST00000354232	ENST00000221973		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	ETFB	chr19	51857404	-	LIM2	chr19	51883893	-
Frame-shit	ENST00000354232	ENST00000596399		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	ETFB	chr19	51857404	-	LIM2	chr19	51883893	-
Frame-shit	ENST00000309244	ENST00000221973		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	ETFB	chr19	51857404	-	LIM2	chr19	51883893	-
Frame-shit	ENST00000309244	ENST00000596399		TCGA	RV	BRCA	TCGA-B6-A0RT-01A	ETFB	chr19	51857404	-	LIM2	chr19	51883893	-
intron-3CDS	ENST00000398645	ENST00000308831		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000398645	ENST00000533360		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
intron-intron	ENST00000398645	ENST00000532559		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000529006	ENST00000308831		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000529006	ENST00000533360		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000529006	ENST00000532559		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
3UTR-3CDS	ENST00000526258	ENST00000308831		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
3UTR-3CDS	ENST00000526258	ENST00000533360		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
3UTR-intron	ENST00000526258	ENST00000532559		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000308783	ENST00000308831		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000308783	ENST00000533360		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000308783	ENST00000532559		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000530342	ENST00000308831		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000530342	ENST00000533360		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000530342	ENST00000532559		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	KDM2A	chr11	67018269	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000429054	ENST00000330636		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000429054	ENST00000468929		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
intron-3UTR	ENST00000429054	ENST00000464010		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000429054	ENST00000480566		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000429054	ENST00000500576		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000429054	ENST00000606472		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
Frame-shit	ENST00000259939	ENST00000330636		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
In-frame	ENST00000259939	ENST00000468929		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
5CDS-3UTR	ENST00000259939	ENST00000464010		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000259939	ENST00000480566		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000259939	ENST00000500576		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000259939	ENST00000606472		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
3UTR-3CDS	ENST00000486622	ENST00000330636		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
3UTR-3CDS	ENST00000486622	ENST00000468929		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
3UTR-3UTR	ENST00000486622	ENST00000464010		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
3UTR-intron	ENST00000486622	ENST00000480566		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
3UTR-intron	ENST00000486622	ENST00000500576		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
3UTR-intron	ENST00000486622	ENST00000606472		TCGA	RV	BRCA	TCGA-A8-A0AD-01A	RNF144B	chr6	18399930	+	LYRM4	chr6	5109725	-
In-frame	ENST00000361204	ENST00000216254		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	SREBF2	chr22	42229362	+	ACO2	chr22	41918834	+
In-frame	ENST00000361204	ENST00000396512		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	SREBF2	chr22	42229362	+	ACO2	chr22	41918834	+
5CDS-intron	ENST00000361204	ENST00000466237		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	SREBF2	chr22	42229362	+	ACO2	chr22	41918834	+
intron-3CDS	ENST00000491541	ENST00000216254		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	SREBF2	chr22	42229362	+	ACO2	chr22	41918834	+
intron-3CDS	ENST00000491541	ENST00000396512		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	SREBF2	chr22	42229362	+	ACO2	chr22	41918834	+
intron-intron	ENST00000491541	ENST00000466237		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	SREBF2	chr22	42229362	+	ACO2	chr22	41918834	+
In-frame	ENST00000299626	ENST00000281038		TCGA	RV	BRCA	TCGA-A2-A0T4-01A	ALG8	chr11	77815026	-	NARS2	chr11	78204241	-
In-frame	ENST00000299626	ENST00000528850		TCGA	RV	BRCA	TCGA-A2-A0T4-01A	ALG8	chr11	77815026	-	NARS2	chr11	78204241	-
Frame-shit	ENST00000376156	ENST00000281038		TCGA	RV	BRCA	TCGA-A2-A0T4-01A	ALG8	chr11	77815026	-	NARS2	chr11	78204241	-
Frame-shit	ENST00000376156	ENST00000528850		TCGA	RV	BRCA	TCGA-A2-A0T4-01A	ALG8	chr11	77815026	-	NARS2	chr11	78204241	-
5UTR-3CDS	ENST00000532552	ENST00000281038		TCGA	RV	BRCA	TCGA-A2-A0T4-01A	ALG8	chr11	77815026	-	NARS2	chr11	78204241	-
5UTR-3CDS	ENST00000532552	ENST00000528850		TCGA	RV	BRCA	TCGA-A2-A0T4-01A	ALG8	chr11	77815026	-	NARS2	chr11	78204241	-
Frame-shit	ENST00000366923	ENST00000445597		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
Frame-shit	ENST00000366923	ENST00000430092		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
Frame-shit	ENST00000366923	ENST00000439375		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000400952		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000366849		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000366850		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000498360		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000366848		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-3CDS	ENST00000468487	ENST00000445597		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-3CDS	ENST00000468487	ENST00000430092		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-3CDS	ENST00000468487	ENST00000439375		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000400952		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000366849		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000366850		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000498360		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000366848		TCGA	RV	BRCA	TCGA-A7-A26I-01B	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
In-frame	ENST00000397668	ENST00000397661		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000397668	ENST00000592199		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000397668	ENST00000587760		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000397668	ENST00000585575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000397668	ENST00000360105		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000397668	ENST00000588228		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000397668	ENST00000587260		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000397668	ENST00000358552		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-intron	ENST00000397668	ENST00000588680		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000264827	ENST00000397661		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000264827	ENST00000592199		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000264827	ENST00000587760		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000264827	ENST00000585575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
In-frame	ENST00000264827	ENST00000360105		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000264827	ENST00000588228		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000264827	ENST00000587260		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000264827	ENST00000358552		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5CDS-intron	ENST00000264827	ENST00000588680		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000589965	ENST00000397661		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000589965	ENST00000592199		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000589965	ENST00000587760		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000589965	ENST00000585575		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000589965	ENST00000360105		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-5UTR	ENST00000589965	ENST00000588228		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-5UTR	ENST00000589965	ENST00000587260		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-5UTR	ENST00000589965	ENST00000358552		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
intron-intron	ENST00000589965	ENST00000588680		TCGA	RV	BRCA	TCGA-S3-AA0Z-01A	HOOK2	chr19	12885483	-	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000314256	ENST00000301585		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KIAA0195	chr17	73452832	+	ICT1	chr17	73013173	+
5UTR-3CDS	ENST00000579208	ENST00000301585		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KIAA0195	chr17	73452832	+	ICT1	chr17	73013173	+
intron-3CDS	ENST00000375248	ENST00000301585		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KIAA0195	chr17	73452832	+	ICT1	chr17	73013173	+
intron-3CDS	ENST00000583795	ENST00000301585		TCGA	RV	BRCA	TCGA-JL-A3YW-01A	KIAA0195	chr17	73452832	+	ICT1	chr17	73013173	+
Frame-shit	ENST00000454300	ENST00000389757		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TANC1	chr2	159954346	+	PKP4	chr2	159459582	+
Frame-shit	ENST00000454300	ENST00000389759		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TANC1	chr2	159954346	+	PKP4	chr2	159459582	+
5CDS-intron	ENST00000454300	ENST00000495123		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TANC1	chr2	159954346	+	PKP4	chr2	159459582	+
Frame-shit	ENST00000263635	ENST00000389757		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TANC1	chr2	159954346	+	PKP4	chr2	159459582	+
Frame-shit	ENST00000263635	ENST00000389759		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TANC1	chr2	159954346	+	PKP4	chr2	159459582	+
5CDS-intron	ENST00000263635	ENST00000495123		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	TANC1	chr2	159954346	+	PKP4	chr2	159459582	+
3UTR-3CDS	ENST00000592666	ENST00000224784		TCGA	RV	BRCA	TCGA-E2-A106-01A	UHRF1	chr19	4911050	+	ACTA2	chr10	90707143	-
3UTR-3CDS	ENST00000592666	ENST00000458208		TCGA	RV	BRCA	TCGA-E2-A106-01A	UHRF1	chr19	4911050	+	ACTA2	chr10	90707143	-
3UTR-5UTR	ENST00000592666	ENST00000480297		TCGA	RV	BRCA	TCGA-E2-A106-01A	UHRF1	chr19	4911050	+	ACTA2	chr10	90707143	-
In-frame	ENST00000540367	ENST00000347580		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000540367	ENST00000379853		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000540367	ENST00000265708		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000540367	ENST00000521880		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5CDS-intron	ENST00000540367	ENST00000523181		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000376618	ENST00000347580		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000376618	ENST00000379853		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000376618	ENST00000265708		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000376618	ENST00000521880		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5CDS-intron	ENST00000376618	ENST00000523181		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000265641	ENST00000347580		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000265641	ENST00000379853		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000265641	ENST00000265708		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
Frame-shit	ENST00000265641	ENST00000521880		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5CDS-intron	ENST00000265641	ENST00000523181		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000539743	ENST00000347580		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000539743	ENST00000379853		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000539743	ENST00000265708		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000539743	ENST00000521880		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5CDS-intron	ENST00000539743	ENST00000523181		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5UTR-3CDS	ENST00000537756	ENST00000347580		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5UTR-3CDS	ENST00000537756	ENST00000379853		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5UTR-3CDS	ENST00000537756	ENST00000265708		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5UTR-3CDS	ENST00000537756	ENST00000521880		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
5UTR-intron	ENST00000537756	ENST00000523181		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000538994	ENST00000347580		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000538994	ENST00000379853		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000538994	ENST00000265708		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
intron-3CDS	ENST00000538994	ENST00000521880		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
intron-intron	ENST00000538994	ENST00000523181		TCGA	RV	BRCA	TCGA-E2-A15R-01A	CPT1A	chr11	68540733	-	ADAM2	chr8	39607263	-
In-frame	ENST00000264833	ENST00000535547		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	OLFM2	chr19	10046980	-	TBC1D21	chr15	74173985	+
In-frame	ENST00000264833	ENST00000300504		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	OLFM2	chr19	10046980	-	TBC1D21	chr15	74173985	+
In-frame	ENST00000264833	ENST00000562056		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	OLFM2	chr19	10046980	-	TBC1D21	chr15	74173985	+
intron-3CDS	ENST00000590841	ENST00000535547		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	OLFM2	chr19	10046980	-	TBC1D21	chr15	74173985	+
intron-3CDS	ENST00000590841	ENST00000300504		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	OLFM2	chr19	10046980	-	TBC1D21	chr15	74173985	+
intron-3CDS	ENST00000590841	ENST00000562056		TCGA	RV	BRCA	TCGA-AN-A0AR-01A	OLFM2	chr19	10046980	-	TBC1D21	chr15	74173985	+
5UTR-3CDS	ENST00000527073	ENST00000377897		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000527073	ENST00000294179		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000527073	ENST00000394690		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000527073	ENST00000541317		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000525631	ENST00000377897		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000525631	ENST00000294179		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000525631	ENST00000394690		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000525631	ENST00000541317		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000307366	ENST00000377897		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000307366	ENST00000294179		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000307366	ENST00000394690		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
Frame-shit	ENST00000307366	ENST00000541317		TCGA	RV	BRCA	TCGA-AN-A0FL-01A	TMEM223	chr11	62559151	-	STX5	chr11	62575100	-
5UTR-5UTR	ENST00000317025	ENST00000423026		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000317025	ENST00000300590		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000317025	ENST00000330943		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000433384	ENST00000423026		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000433384	ENST00000300590		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000433384	ENST00000330943		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000527502	ENST00000423026		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000527502	ENST00000300590		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000527502	ENST00000330943		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000316985	ENST00000423026		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000316985	ENST00000300590		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-5UTR	ENST00000316985	ENST00000330943		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
intron-5UTR	ENST00000525081	ENST00000423026		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
intron-5UTR	ENST00000525081	ENST00000300590		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
intron-5UTR	ENST00000525081	ENST00000330943		TCGA	RV	BRCA	TCGA-BH-A1FB-01A	WHSC1L1	chr8	38239317	-	SNX20	chr16	50711446	-
5UTR-3CDS	ENST00000520552	ENST00000374076		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000520552	ENST00000608611		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000335659	ENST00000374076		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000335659	ENST00000608611		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000519597	ENST00000374076		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000519597	ENST00000608611		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000520311	ENST00000374076		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000520311	ENST00000608611		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000519316	ENST00000374076		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000519316	ENST00000608611		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000524319	ENST00000374076		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000524319	ENST00000608611		TCGA	RV	BRCA	TCGA-AN-A04D-01A	ANKRD46	chr8	101571939	-	TMEM222	chr1	27657211	+
In-frame	ENST00000377184	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000377184	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000377184	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000269095	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000269095	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000269095	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000461854	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000461854	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000461854	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
intron-3CDS	ENST00000520305	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
intron-3CDS	ENST00000520305	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
intron-3CDS	ENST00000520305	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000523501	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000523501	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000523501	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000536246	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000536246	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
Frame-shit	ENST00000536246	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000518766	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000518766	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
In-frame	ENST00000518766	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5UTR-3CDS	ENST00000473246	ENST00000225992		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5UTR-3CDS	ENST00000473246	ENST00000591228		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5UTR-3CDS	ENST00000473246	ENST00000587006		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MPP2	chr17	41975630	-	PPY	chr17	42019022	-
5CDS-intron	ENST00000296370	ENST00000284049		TCGA	RV	BRCA	TCGA-AR-A1AK-01A	S100P	chr4	6698896	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000296370	ENST00000511067		TCGA	RV	BRCA	TCGA-AR-A1AK-01A	S100P	chr4	6698896	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000513778	ENST00000284049		TCGA	RV	BRCA	TCGA-AR-A1AK-01A	S100P	chr4	6698896	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000513778	ENST00000511067		TCGA	RV	BRCA	TCGA-AR-A1AK-01A	S100P	chr4	6698896	+	CHD1	chr5	98219587	-
Frame-shit	ENST00000462484	ENST00000371421		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
5CDS-3UTR	ENST00000462484	ENST00000491911		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
5UTR-3CDS	ENST00000334856	ENST00000371421		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
5UTR-3UTR	ENST00000334856	ENST00000491911		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
Frame-shit	ENST00000460843	ENST00000371421		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
5CDS-3UTR	ENST00000460843	ENST00000491911		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
3UTR-3CDS	ENST00000371394	ENST00000371421		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
3UTR-3UTR	ENST00000371394	ENST00000491911		TCGA	RV	BRCA	TCGA-PL-A8LZ-01A	EHMT1	chr9	140513501	+	ARRDC1	chr9	140507348	+
5UTR-3CDS	ENST00000284037	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000284037	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000284037	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380943	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380943	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000380943	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000416865	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000416865	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000416865	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380935	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380935	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000380935	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380939	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380939	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000380939	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380936	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380936	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000380936	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380938	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000380938	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000380938	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000511297	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000511297	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000511297	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000506030	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000506030	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000506030	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000508515	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000508515	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
intron-intron	ENST00000508515	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000503913	ENST00000380985		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000503913	ENST00000502464		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
intron-intron	ENST00000503913	ENST00000515595		TCGA	RV	BRCA	TCGA-PE-A5DC-01A	ERBB2IP	chr5	65222634	+	NLN	chr5	65105342	+
In-frame	ENST00000369110	ENST00000369066		TCGA	RV	BRCA	TCGA-C8-A137-01A	PREP	chr6	105729621	-	AIM1	chr6	107003643	+
In-frame	ENST00000369110	ENST00000535438		TCGA	RV	BRCA	TCGA-C8-A137-01A	PREP	chr6	105729621	-	AIM1	chr6	107003643	+
5CDS-intron	ENST00000369110	ENST00000487681		TCGA	RV	BRCA	TCGA-C8-A137-01A	PREP	chr6	105729621	-	AIM1	chr6	107003643	+
In-frame	ENST00000393469	ENST00000302334		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
5CDS-3UTR	ENST00000393469	ENST00000511434		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3CDS	ENST00000423114	ENST00000302334		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3UTR	ENST00000423114	ENST00000511434		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
In-frame	ENST00000469902	ENST00000302334		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
5CDS-3UTR	ENST00000469902	ENST00000511434		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
5UTR-3CDS	ENST00000314584	ENST00000302334		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
5UTR-3UTR	ENST00000314584	ENST00000511434		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3CDS	ENST00000430155	ENST00000302334		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3UTR	ENST00000430155	ENST00000511434		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3CDS	ENST00000465475	ENST00000302334		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3UTR	ENST00000465475	ENST00000511434		TCGA	RV	BRCA	TCGA-D8-A1XR-01A	SLC12A8	chr3	124930143	-	BFSP2	chr3	133169147	+
intron-3CDS	ENST00000538689	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000220584	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000220584	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000220584	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000220584	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000220584	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000443614	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000443614	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000443614	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000443614	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000443614	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528812	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528812	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528812	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528812	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528812	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000436750		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000455213		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000403422		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000528323		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000284503		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11660440	+	NEIL2	chr8	11640712	+
In-frame	ENST00000374012	ENST00000237530		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
In-frame	ENST00000374012	ENST00000373622		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
5CDS-intron	ENST00000374012	ENST00000470352		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
3UTR-3CDS	ENST00000439301	ENST00000237530		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
3UTR-3CDS	ENST00000439301	ENST00000373622		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
3UTR-intron	ENST00000439301	ENST00000470352		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
intron-3CDS	ENST00000481202	ENST00000237530		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
intron-3CDS	ENST00000481202	ENST00000373622		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
intron-intron	ENST00000481202	ENST00000470352		TCGA	RV	BRCA	TCGA-A8-A079-01A	PHF20	chr20	34528969	+	RPN2	chr20	35812583	+
5CDS-intron	ENST00000548446	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548446	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548446	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548446	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548446	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000420353	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000420353	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000420353	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000420353	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000420353	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000415113	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000415113	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000415113	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000415113	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000415113	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000456903	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000456903	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000456903	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000456903	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000456903	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548118	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548118	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548118	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548118	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000548118	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000591397	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000591397	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000591397	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000591397	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000591397	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000328463	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000328463	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000328463	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000328463	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
5CDS-intron	ENST00000328463	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000550241		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000602871		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000394349		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000549164		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000338662		TCGA	RV	BRCA	TCGA-OL-A66P-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54063732	-
In-frame	ENST00000578681	ENST00000443572		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000578681	ENST00000406116		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000578681	ENST00000225577		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000578681	ENST00000393021		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000578681	ENST00000587061		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000583590	ENST00000443572		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000583590	ENST00000406116		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000583590	ENST00000225577		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000583590	ENST00000393021		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000583590	ENST00000587061		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000359353	ENST00000443572		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000359353	ENST00000406116		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000359353	ENST00000225577		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000359353	ENST00000393021		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000359353	ENST00000587061		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000389924	ENST00000443572		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000389924	ENST00000406116		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000389924	ENST00000225577		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000389924	ENST00000393021		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000389924	ENST00000587061		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000457800	ENST00000443572		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000457800	ENST00000406116		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000457800	ENST00000225577		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000457800	ENST00000393021		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000457800	ENST00000587061		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000582985	ENST00000443572		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000582985	ENST00000406116		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000582985	ENST00000225577		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
intron-5UTR	ENST00000582985	ENST00000393021		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
intron-intron	ENST00000582985	ENST00000587061		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	DDX42	chr17	61882535	+	RPS6KB1	chr17	57987923	+
5UTR-3UTR	ENST00000356341	ENST00000281030		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	PAK1	chr11	77184597	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000530617	ENST00000281030		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	PAK1	chr11	77184597	-	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000278568	ENST00000281030		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	PAK1	chr11	77184597	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000528203	ENST00000281030		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	PAK1	chr11	77184597	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000525542	ENST00000281030		TCGA	RV	BRCA	TCGA-E2-A1LS-01A	PAK1	chr11	77184597	-	THRSP	chr11	77778705	+
Frame-shit	ENST00000272930	ENST00000404910		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000272930	ENST00000254661		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000272930	ENST00000409726		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000272930	ENST00000403885		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409633	ENST00000404910		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409633	ENST00000254661		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409633	ENST00000409726		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409633	ENST00000403885		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000414443	ENST00000404910		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000414443	ENST00000254661		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000414443	ENST00000409726		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000414443	ENST00000403885		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409953	ENST00000404910		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409953	ENST00000254661		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409953	ENST00000409726		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409953	ENST00000403885		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409332	ENST00000404910		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409332	ENST00000254661		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409332	ENST00000409726		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409332	ENST00000403885		TCGA	RV	BRCA	TCGA-LL-A9Q3-01A	UBE2F	chr2	238925275	+	RAMP1	chr2	238820170	+
In-frame	ENST00000367942	ENST00000367929		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	ATF6	chr1	161772062	+	SH2D1B	chr1	162367105	-
In-frame	ENST00000367942	ENST00000359567		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	ATF6	chr1	161772062	+	SH2D1B	chr1	162367105	-
5CDS-intron	ENST00000367942	ENST00000493550		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	ATF6	chr1	161772062	+	SH2D1B	chr1	162367105	-
intron-3CDS	ENST00000476437	ENST00000367929		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	ATF6	chr1	161772062	+	SH2D1B	chr1	162367105	-
intron-3CDS	ENST00000476437	ENST00000359567		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	ATF6	chr1	161772062	+	SH2D1B	chr1	162367105	-
intron-intron	ENST00000476437	ENST00000493550		TCGA	RV	BRCA	TCGA-EW-A1PH-01A	ATF6	chr1	161772062	+	SH2D1B	chr1	162367105	-
In-frame	ENST00000513761	ENST00000302085		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000513761	ENST00000515527		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000513761	ENST00000394092		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000513761	ENST00000515385		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
In-frame	ENST00000347613	ENST00000302085		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000347613	ENST00000515527		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000347613	ENST00000394092		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000347613	ENST00000515385		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
In-frame	ENST00000360642	ENST00000302085		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000360642	ENST00000515527		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000360642	ENST00000394092		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000360642	ENST00000515385		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
Frame-shit	ENST00000504131	ENST00000302085		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000504131	ENST00000515527		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000504131	ENST00000394092		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
5CDS-intron	ENST00000504131	ENST00000515385		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
3UTR-3CDS	ENST00000506924	ENST00000302085		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
3UTR-intron	ENST00000506924	ENST00000515527		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
3UTR-intron	ENST00000506924	ENST00000394092		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
3UTR-intron	ENST00000506924	ENST00000515385		TCGA	RV	BRCA	TCGA-AN-A04C-01A	CLCN3	chr4	170557239	+	SMAD1	chr4	146474936	+
In-frame	ENST00000341911	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000341911	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000341911	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000341911	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000341911	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000341911	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000341911	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000341911	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000341911	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000316528	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000316528	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000316528	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000316528	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000316528	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000316528	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000316528	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000316528	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000316528	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000442647	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000442647	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000442647	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000442647	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000442647	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000442647	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000442647	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000442647	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000442647	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000367814	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000367814	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000367814	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000367814	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000367814	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000367814	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000367814	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000367814	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000367814	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000525369	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000525369	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000525369	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000525369	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000525369	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000525369	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000525369	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000525369	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000525369	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534121	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534121	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534121	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534121	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534121	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534121	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000534121	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000534121	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000534121	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000533624	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000533624	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000533624	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000533624	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000533624	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000533624	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000533624	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000533624	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000533624	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534044	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534044	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534044	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534044	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534044	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000534044	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000534044	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000534044	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000534044	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000528774	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000528774	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000528774	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000528774	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000528774	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000528774	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000528774	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000528774	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000528774	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-3CDS	ENST00000531845	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-3CDS	ENST00000531845	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-3CDS	ENST00000531845	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-3CDS	ENST00000531845	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-3CDS	ENST00000531845	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-3CDS	ENST00000531845	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-intron	ENST00000531845	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-intron	ENST00000531845	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
3UTR-intron	ENST00000531845	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000527615	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000527615	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000527615	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000527615	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000527615	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000527615	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000527615	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000527615	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
5CDS-intron	ENST00000527615	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-3CDS	ENST00000420123	ENST00000380934		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-3CDS	ENST00000420123	ENST00000380959		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-3CDS	ENST00000420123	ENST00000380953		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-3CDS	ENST00000420123	ENST00000397575		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-3CDS	ENST00000420123	ENST00000397581		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-3CDS	ENST00000420123	ENST00000397579		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-intron	ENST00000420123	ENST00000543693		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-intron	ENST00000420123	ENST00000380924		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
intron-intron	ENST00000420123	ENST00000380921		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	MYB	chr6	135521553	+	NFIB	chr9	14307519	-
In-frame	ENST00000282111	ENST00000286574		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	TCF7L1	chr2	85361573	+	WIF1	chr12	65471634	-
3UTR-3CDS	ENST00000494519	ENST00000286574		TCGA	RV	BRCA	TCGA-E2-A1LI-01A	TCF7L1	chr2	85361573	+	WIF1	chr12	65471634	-
Frame-shit	ENST00000450904	ENST00000308127		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
Frame-shit	ENST00000450904	ENST00000308298		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
Frame-shit	ENST00000450904	ENST00000376757		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
5CDS-3UTR	ENST00000450904	ENST00000532181		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
In-frame	ENST00000362034	ENST00000308127		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
In-frame	ENST00000362034	ENST00000308298		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
In-frame	ENST00000362034	ENST00000376757		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
5CDS-3UTR	ENST00000362034	ENST00000532181		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
Frame-shit	ENST00000567045	ENST00000308127		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
Frame-shit	ENST00000567045	ENST00000308298		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
Frame-shit	ENST00000567045	ENST00000376757		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
5CDS-3UTR	ENST00000567045	ENST00000532181		TCGA	RV	BRCA	TCGA-E2-A15O-01A	MRPL21	chr11	68663983	-	SSH3	chr11	67074309	+
5CDS-intron	ENST00000244050	ENST00000417961		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000244050	ENST00000361573		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48481265	+
5CDS-5UTR	ENST00000244050	ENST00000541138		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000244050	ENST00000539601		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000244050	ENST00000490250		TCGA	RV	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48481265	+
In-frame	ENST00000294053	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000294053	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000538039	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000538039	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000437826	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000437826	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000340729	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000340729	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000543042	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
In-frame	ENST00000543042	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000445069	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000445069	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000538021	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000538021	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000542555	ENST00000371621		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000542555	ENST00000541713		TCGA	RV	BRCA	TCGA-BH-A0HL-01A	CLPB	chr11	72040751	-	PTPN1	chr20	49191054	+
intron-3CDS	ENST00000340149	ENST00000265689		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000340149	ENST00000533728		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000340149	ENST00000356135		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-3CDS	ENST00000361507	ENST00000265689		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000361507	ENST00000533728		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000361507	ENST00000356135		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-3CDS	ENST00000526030	ENST00000265689		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000526030	ENST00000533728		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000526030	ENST00000356135		TCGA	RV	BRCA	TCGA-3C-AAAU-01A	GAB2	chr11	78075062	-	CHKA	chr11	67821514	-
5UTR-3CDS	ENST00000310864	ENST00000262138		TCGA	RV	BRCA	TCGA-AO-A03L-01A	IQCB1	chr3	121553238	-	CACNG4	chr17	65014305	+
5UTR-3CDS	ENST00000349820	ENST00000262138		TCGA	RV	BRCA	TCGA-AO-A03L-01A	IQCB1	chr3	121553238	-	CACNG4	chr17	65014305	+
In-frame	ENST00000291574	ENST00000333229		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
In-frame	ENST00000291574	ENST00000342449		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
In-frame	ENST00000291574	ENST00000380800		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
5CDS-intron	ENST00000291574	ENST00000341322		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
5CDS-intron	ENST00000291574	ENST00000470108		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
In-frame	ENST00000380221	ENST00000333229		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
In-frame	ENST00000380221	ENST00000342449		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
In-frame	ENST00000380221	ENST00000380800		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
5CDS-intron	ENST00000380221	ENST00000341322		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
5CDS-intron	ENST00000380221	ENST00000470108		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
intron-3CDS	ENST00000483973	ENST00000333229		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
intron-3CDS	ENST00000483973	ENST00000342449		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
intron-3CDS	ENST00000483973	ENST00000380800		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
intron-intron	ENST00000483973	ENST00000341322		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
intron-intron	ENST00000483973	ENST00000470108		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	TRAPPC10	chr21	45432441	+	BRWD1	chr21	40630598	-
In-frame	ENST00000517970	ENST00000181383		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000517970	ENST00000439329		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000349423	ENST00000181383		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000349423	ENST00000439329		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000341922	ENST00000181383		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000341922	ENST00000439329		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000265428	ENST00000181383		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
In-frame	ENST00000265428	ENST00000439329		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
intron-3CDS	ENST00000523863	ENST00000181383		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
intron-3CDS	ENST00000523863	ENST00000439329		TCGA	RV	BRCA	TCGA-E2-A1LG-01A	WWP1	chr8	87474075	+	CPB2	chr13	46661955	-
5CDS-5UTR	ENST00000267615	ENST00000541043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000267615	ENST00000379923		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000267615	ENST00000309951		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000354313	ENST00000541043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000354313	ENST00000379923		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000354313	ENST00000309951		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000556603	ENST00000541043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000556603	ENST00000379923		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-5UTR	ENST00000556603	ENST00000309951		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5UTR-5UTR	ENST00000555495	ENST00000541043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5UTR-5UTR	ENST00000555495	ENST00000379923		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5UTR-5UTR	ENST00000555495	ENST00000309951		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
intron-5UTR	ENST00000556954	ENST00000541043		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
intron-5UTR	ENST00000556954	ENST00000379923		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
intron-5UTR	ENST00000556954	ENST00000309951		TCGA	RV	BRCA	TCGA-BH-A0HY-01A	ITPK1	chr14	93581414	-	ACO1	chr9	32405483	+
5CDS-3UTR	ENST00000233114	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000233114	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000233114	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000409908	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000409908	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000409908	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000409476	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000409476	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000409476	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000539945	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000539945	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000539945	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000544381	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000544381	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000544381	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000394423	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000394423	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000394423	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000462944	ENST00000472729		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000462944	ENST00000311832		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000462944	ENST00000538736		TCGA	RV	BRCA	TCGA-A2-A04U-01A	MDH1	chr2	63821720	+	COMMD1	chr2	62227836	+
Frame-shit	ENST00000261497	ENST00000255559		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000261497	ENST00000542342		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000261497	ENST00000579988		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000261497	ENST00000579732		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-3CDS	ENST00000537526	ENST00000255559		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-3CDS	ENST00000537526	ENST00000542342		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-intron	ENST00000537526	ENST00000579988		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-intron	ENST00000537526	ENST00000579732		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-3CDS	ENST00000455117	ENST00000255559		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-3CDS	ENST00000455117	ENST00000542342		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-intron	ENST00000455117	ENST00000579988		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
intron-intron	ENST00000455117	ENST00000579732		TCGA	RV	BRCA	TCGA-D8-A27N-01A	USP22	chr17	20945978	-	SLC39A11	chr17	70732858	-
5CDS-5UTR	ENST00000268712	ENST00000526785		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000268712	ENST00000265651		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000268712	ENST00000530401		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000268712	ENST00000531080		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000268712	ENST00000532057		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000268712	ENST00000534136		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000268712	ENST00000448981		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000268712	ENST00000533103		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000395851	ENST00000526785		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000395851	ENST00000265651		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395851	ENST00000530401		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395851	ENST00000531080		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395851	ENST00000532057		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395851	ENST00000534136		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395851	ENST00000448981		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000395851	ENST00000533103		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000395857	ENST00000526785		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000395857	ENST00000265651		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395857	ENST00000530401		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395857	ENST00000531080		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395857	ENST00000532057		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395857	ENST00000534136		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-intron	ENST00000395857	ENST00000448981		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-5UTR	ENST00000395857	ENST00000533103		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000395848	ENST00000526785		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000395848	ENST00000265651		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000395848	ENST00000530401		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000395848	ENST00000531080		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000395848	ENST00000532057		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000395848	ENST00000534136		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000395848	ENST00000448981		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000395848	ENST00000533103		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000583226	ENST00000526785		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000583226	ENST00000265651		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000583226	ENST00000530401		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000583226	ENST00000531080		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000583226	ENST00000532057		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000583226	ENST00000534136		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-intron	ENST00000583226	ENST00000448981		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
intron-5UTR	ENST00000583226	ENST00000533103		TCGA	RV	BRCA	TCGA-D8-A1JD-01A	NCOR1	chr17	15960828	-	FBXO3	chr11	33792376	-
5CDS-3UTR	ENST00000298281	ENST00000310358		TCGA	RV	BRCA	TCGA-AR-A24H-01A	PCF11	chr11	82868673	+	SPON1	chr11	14264878	+
Frame-shit	ENST00000406091	ENST00000285402		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
5CDS-intron	ENST00000406091	ENST00000518835		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-3CDS	ENST00000262231	ENST00000285402		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-intron	ENST00000262231	ENST00000518835		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-3CDS	ENST00000507740	ENST00000285402		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-intron	ENST00000507740	ENST00000518835		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-3CDS	ENST00000522174	ENST00000285402		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-intron	ENST00000522174	ENST00000518835		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-3CDS	ENST00000436393	ENST00000285402		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-intron	ENST00000436393	ENST00000518835		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-3CDS	ENST00000339750	ENST00000285402		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
intron-intron	ENST00000339750	ENST00000518835		TCGA	RV	BRCA	TCGA-E9-A22B-01A	RIMS2	chr8	104513290	+	ODF1	chr8	103572680	+
5CDS-5UTR	ENST00000443572	ENST00000258991		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000443572	ENST00000583097		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000443572	ENST00000584379		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000443572	ENST00000581812		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000406116	ENST00000258991		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000406116	ENST00000583097		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000406116	ENST00000584379		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000406116	ENST00000581812		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000225577	ENST00000258991		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000225577	ENST00000583097		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000225577	ENST00000584379		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000225577	ENST00000581812		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000393021	ENST00000258991		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000393021	ENST00000583097		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000393021	ENST00000584379		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000393021	ENST00000581812		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000587061	ENST00000258991		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000587061	ENST00000583097		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000587061	ENST00000584379		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
intron-intron	ENST00000587061	ENST00000581812		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	RPS6KB1	chr17	57990165	+	TEX2	chr17	62291602	-
Frame-shit	ENST00000456518	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000456518	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000456518	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000456518	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
In-frame	ENST00000397174	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000397174	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000397174	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000397174	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
In-frame	ENST00000402904	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000402904	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000402904	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000402904	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
Frame-shit	ENST00000361191	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000361191	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000361191	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000361191	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
In-frame	ENST00000397171	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000397171	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000397171	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000397171	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
Frame-shit	ENST00000361705	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000361705	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000361705	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000361705	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
In-frame	ENST00000326197	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000326197	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000326197	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000326197	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
Frame-shit	ENST00000372595	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372595	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372595	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372595	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
Frame-shit	ENST00000337495	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000337495	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000337495	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000337495	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
In-frame	ENST00000372596	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372596	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372596	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372596	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
Frame-shit	ENST00000372597	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372597	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372597	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
5CDS-5UTR	ENST00000372597	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
intron-3CDS	ENST00000472037	ENST00000433473		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
intron-5UTR	ENST00000472037	ENST00000372775		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
intron-5UTR	ENST00000472037	ENST00000449045		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
intron-5UTR	ENST00000472037	ENST00000530076		TCGA	RV	BRCA	TCGA-E9-A1R7-01A	SCMH1	chr1	41536267	-	PPT1	chr1	40539855	-
Frame-shit	ENST00000254066	ENST00000264639		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
Frame-shit	ENST00000254066	ENST00000541736		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
Frame-shit	ENST00000394089	ENST00000264639		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
Frame-shit	ENST00000394089	ENST00000541736		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
Frame-shit	ENST00000425707	ENST00000264639		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
Frame-shit	ENST00000425707	ENST00000541736		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
intron-3CDS	ENST00000394086	ENST00000264639		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
intron-3CDS	ENST00000394086	ENST00000541736		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
intron-3CDS	ENST00000394081	ENST00000264639		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
intron-3CDS	ENST00000394081	ENST00000541736		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
intron-3CDS	ENST00000420042	ENST00000264639		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
intron-3CDS	ENST00000420042	ENST00000541736		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38487648	+	PSMD3	chr17	38151207	+
In-frame	ENST00000588240	ENST00000262325		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000588240	ENST00000592545		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000588240	ENST00000538556		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000588240	ENST00000312678		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000588240	ENST00000589344		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000588240	ENST00000537622		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
5CDS-3UTR	ENST00000588240	ENST00000545922		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000592237	ENST00000262325		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000592237	ENST00000592545		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000592237	ENST00000538556		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000592237	ENST00000312678		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000592237	ENST00000589344		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000592237	ENST00000537622		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
5CDS-3UTR	ENST00000592237	ENST00000545922		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000311979	ENST00000262325		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000311979	ENST00000592545		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000311979	ENST00000538556		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000311979	ENST00000312678		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000311979	ENST00000589344		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
In-frame	ENST00000311979	ENST00000537622		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
5CDS-3UTR	ENST00000311979	ENST00000545922		TCGA	RV	BRCA	TCGA-AN-A049-01A	TAF15	chr17	34151202	+	AP2B1	chr17	33966614	+
intron-3CDS	ENST00000539115	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000539115	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000539115	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-3CDS	ENST00000379188	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000379188	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000379188	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-3CDS	ENST00000379177	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-intron	ENST00000379177	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-intron	ENST00000379177	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-3CDS	ENST00000304543	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-intron	ENST00000304543	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-intron	ENST00000304543	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-3CDS	ENST00000459724	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000459724	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000459724	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-3CDS	ENST00000540034	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-intron	ENST00000540034	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5UTR-intron	ENST00000540034	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-3CDS	ENST00000338565	ENST00000379226		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000338565	ENST00000476598		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
intron-intron	ENST00000338565	ENST00000379220		TCGA	RV	BRCA	TCGA-EW-A1P7-01A	ZFX	chrX	24170947	+	APOO	chrX	23874499	-
5CDS-3UTR	ENST00000542672	ENST00000468573		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
5CDS-5UTR	ENST00000542672	ENST00000255380		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
5CDS-3UTR	ENST00000366578	ENST00000468573		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
5CDS-5UTR	ENST00000366578	ENST00000255380		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
3UTR-3UTR	ENST00000492634	ENST00000468573		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
3UTR-5UTR	ENST00000492634	ENST00000255380		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
intron-3UTR	ENST00000546208	ENST00000468573		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
intron-5UTR	ENST00000546208	ENST00000255380		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239841486	+
In-frame	ENST00000306125	ENST00000398896		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000306125	ENST00000398898		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000306125	ENST00000417901		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000306125	ENST00000453664		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000306125	ENST00000398892		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000306125	ENST00000398888		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000306125	ENST00000434032		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
5CDS-intron	ENST00000306125	ENST00000488993		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000398896		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000398898		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000417901		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000453664		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000398892		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000398888		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
In-frame	ENST00000414533	ENST00000434032		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
5CDS-intron	ENST00000414533	ENST00000488993		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000398896		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000398898		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000417901		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000453664		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000398892		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000398888		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000470225	ENST00000434032		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-intron	ENST00000470225	ENST00000488993		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000398896		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000398898		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000417901		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000453664		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000398892		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000398888		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-3CDS	ENST00000420147	ENST00000434032		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
intron-intron	ENST00000420147	ENST00000488993		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	QARS	chr3	49135625	-	USP19	chr3	49150062	-
Frame-shit	ENST00000335464	ENST00000582036		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000335464	ENST00000307504		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000335464	ENST00000311014		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000335464	ENST00000446837		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000335464	ENST00000579490		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000417024	ENST00000582036		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000417024	ENST00000307504		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000417024	ENST00000311014		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000417024	ENST00000446837		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000417024	ENST00000579490		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582773	ENST00000582036		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582773	ENST00000307504		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582773	ENST00000311014		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582773	ENST00000446837		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582773	ENST00000579490		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582330	ENST00000582036		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582330	ENST00000307504		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582330	ENST00000311014		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582330	ENST00000446837		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000582330	ENST00000579490		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
intron-3CDS	ENST00000584171	ENST00000582036		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
intron-3CDS	ENST00000584171	ENST00000307504		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
intron-3CDS	ENST00000584171	ENST00000311014		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
intron-3CDS	ENST00000584171	ENST00000446837		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
intron-3CDS	ENST00000584171	ENST00000579490		TCGA	RV	BRCA	TCGA-EW-A1PA-01A	TMEM104	chr17	72791771	+	DNAI2	chr17	72310260	+
Frame-shit	ENST00000225428	ENST00000240333		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	SLC35B1	chr17	47783696	-
Frame-shit	ENST00000225428	ENST00000415270		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000536127	ENST00000240333		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000536127	ENST00000415270		TCGA	RV	BRCA	TCGA-3C-AALI-01A	CWC25	chr17	36981419	-	SLC35B1	chr17	47783696	-
In-frame	ENST00000234677	ENST00000369939		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000234677	ENST00000529753		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000234677	ENST00000369938		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000369923	ENST00000369939		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000369923	ENST00000529753		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000369923	ENST00000369938		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000468588	ENST00000369939		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000468588	ENST00000529753		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-intron	ENST00000468588	ENST00000369938		TCGA	RV	BRCA	TCGA-BH-A18V-06A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
Frame-shit	ENST00000583610	ENST00000331159		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000583610	ENST00000577233		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000394294	ENST00000331159		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000394294	ENST00000577233		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000264658	ENST00000331159		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000264658	ENST00000577233		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000577399	ENST00000331159		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000577399	ENST00000577233		TCGA	RV	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37557614	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000302418	ENST00000398141		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
Frame-shit	ENST00000302418	ENST00000398145		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
Frame-shit	ENST00000302418	ENST00000402105		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
Frame-shit	ENST00000302418	ENST00000336873		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
5CDS-intron	ENST00000302418	ENST00000493455		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
intron-3CDS	ENST00000493889	ENST00000398141		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
intron-3CDS	ENST00000493889	ENST00000398145		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
intron-3CDS	ENST00000493889	ENST00000402105		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
intron-3CDS	ENST00000493889	ENST00000336873		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
intron-intron	ENST00000493889	ENST00000493455		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	KIF5B	chr10	32337392	-	HPS4	chr22	26860792	-
In-frame	ENST00000353442	ENST00000389413		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000353442	ENST00000409483		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000353442	ENST00000389416		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000353442	ENST00000389418		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000353442	ENST00000404321		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000359422	ENST00000389413		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000359422	ENST00000409483		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000359422	ENST00000389416		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000359422	ENST00000389418		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000359422	ENST00000404321		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000354505	ENST00000389413		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000354505	ENST00000409483		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000354505	ENST00000389416		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000354505	ENST00000389418		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000354505	ENST00000404321		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000540390	ENST00000389413		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000540390	ENST00000409483		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000540390	ENST00000389416		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000540390	ENST00000389418		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000540390	ENST00000404321		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000430825	ENST00000389413		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000430825	ENST00000409483		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000430825	ENST00000389416		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000430825	ENST00000389418		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000430825	ENST00000404321		TCGA	RV	BRCA	TCGA-AR-A24K-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157997965	-
In-frame	ENST00000521381	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
In-frame	ENST00000521657	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
intron-3CDS	ENST00000517643	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
In-frame	ENST00000274335	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
In-frame	ENST00000396611	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
intron-3CDS	ENST00000320694	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
intron-3CDS	ENST00000336483	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
intron-3CDS	ENST00000523872	ENST00000215565		TCGA	RV	BRCA	TCGA-B6-A1KF-01A	PIK3R1	chr5	67576834	+	NDUFB7	chr19	14677745	-
In-frame	ENST00000287263	ENST00000302495		TCGA	RV	BRCA	TCGA-BH-A0EI-01A	RAB11FIP1	chr8	37727938	-	HTRA4	chr8	38836734	+
In-frame	ENST00000330843	ENST00000302495		TCGA	RV	BRCA	TCGA-BH-A0EI-01A	RAB11FIP1	chr8	37727938	-	HTRA4	chr8	38836734	+
Frame-shit	ENST00000522727	ENST00000302495		TCGA	RV	BRCA	TCGA-BH-A0EI-01A	RAB11FIP1	chr8	37727938	-	HTRA4	chr8	38836734	+
5UTR-3CDS	ENST00000523182	ENST00000302495		TCGA	RV	BRCA	TCGA-BH-A0EI-01A	RAB11FIP1	chr8	37727938	-	HTRA4	chr8	38836734	+
intron-3CDS	ENST00000524118	ENST00000302495		TCGA	RV	BRCA	TCGA-BH-A0EI-01A	RAB11FIP1	chr8	37727938	-	HTRA4	chr8	38836734	+
5CDS-intron	ENST00000262613	ENST00000408982		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000262613	ENST00000262477		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000262613	ENST00000537505		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000262613	ENST00000546142		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000262613	ENST00000341923		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000262613	ENST00000570487		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000413388	ENST00000408982		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000413388	ENST00000262477		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000413388	ENST00000537505		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000413388	ENST00000546142		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000413388	ENST00000341923		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000413388	ENST00000570487		TCGA	RV	BRCA	TCGA-AC-A2FM-01A	SLC9A3R1	chr17	72765489	+	RABEP1	chr17	5283828	+
5CDS-5UTR	ENST00000260408	ENST00000372270		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000260408	ENST00000372267		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000260408	ENST00000372263		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000402627	ENST00000372270		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000402627	ENST00000372267		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000402627	ENST00000372263		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000561288	ENST00000372270		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000561288	ENST00000372267		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000561288	ENST00000372263		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000396140	ENST00000372270		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000396140	ENST00000372267		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000396140	ENST00000372263		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5UTR-5UTR	ENST00000558733	ENST00000372270		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5UTR-5UTR	ENST00000558733	ENST00000372267		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
5UTR-5UTR	ENST00000558733	ENST00000372263		TCGA	RV	BRCA	TCGA-C8-A8HP-01A	ADAM10	chr15	59041679	-	PLAC9	chr10	81901838	+
Frame-shit	ENST00000353442	ENST00000389413		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000353442	ENST00000409483		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000353442	ENST00000389416		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000353442	ENST00000389418		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000353442	ENST00000404321		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
5UTR-3CDS	ENST00000359422	ENST00000389413		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
5UTR-3CDS	ENST00000359422	ENST00000409483		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
5UTR-3CDS	ENST00000359422	ENST00000389416		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
5UTR-3CDS	ENST00000359422	ENST00000389418		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
5UTR-3CDS	ENST00000359422	ENST00000404321		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000354505	ENST00000389413		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000354505	ENST00000409483		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000354505	ENST00000389416		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000354505	ENST00000389418		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000354505	ENST00000404321		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000540390	ENST00000389413		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000540390	ENST00000409483		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000540390	ENST00000389416		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000540390	ENST00000389418		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
Frame-shit	ENST00000540390	ENST00000404321		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
intron-3CDS	ENST00000430825	ENST00000389413		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
intron-3CDS	ENST00000430825	ENST00000409483		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
intron-3CDS	ENST00000430825	ENST00000389416		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
intron-3CDS	ENST00000430825	ENST00000389418		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
intron-3CDS	ENST00000430825	ENST00000404321		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	LMBR1	chr7	156589083	-	PTPRN2	chr7	157341713	-
5CDS-5UTR	ENST00000341744	ENST00000360525		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
5CDS-5UTR	ENST00000341744	ENST00000464265		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
5CDS-5UTR	ENST00000341744	ENST00000329667		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
5CDS-5UTR	ENST00000341744	ENST00000399102		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
5CDS-5UTR	ENST00000341744	ENST00000399103		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
5CDS-5UTR	ENST00000341744	ENST00000399098		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395816	ENST00000360525		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395816	ENST00000464265		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395816	ENST00000329667		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395816	ENST00000399102		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395816	ENST00000399103		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395816	ENST00000399098		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000347215	ENST00000360525		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000347215	ENST00000464265		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000347215	ENST00000329667		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000347215	ENST00000399102		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000347215	ENST00000399103		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000347215	ENST00000399098		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000265626	ENST00000360525		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000265626	ENST00000464265		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000265626	ENST00000329667		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000265626	ENST00000399102		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000265626	ENST00000399103		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000265626	ENST00000399098		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395814	ENST00000360525		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395814	ENST00000464265		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395814	ENST00000329667		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395814	ENST00000399102		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395814	ENST00000399103		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000395814	ENST00000399098		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000472841	ENST00000360525		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000472841	ENST00000464265		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000472841	ENST00000329667		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000472841	ENST00000399102		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000472841	ENST00000399103		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
intron-5UTR	ENST00000472841	ENST00000399098		TCGA	RV	BRCA	TCGA-BH-A1FE-01A	PMEPA1	chr20	56284530	-	PIGP	chr21	38444837	-
Frame-shit	ENST00000343526	ENST00000288513		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
Frame-shit	ENST00000343526	ENST00000436657		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
Frame-shit	ENST00000343526	ENST00000421622		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
5CDS-5UTR	ENST00000343526	ENST00000463557		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
5CDS-5UTR	ENST00000343526	ENST00000419765		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
Frame-shit	ENST00000415680	ENST00000288513		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
Frame-shit	ENST00000415680	ENST00000436657		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
Frame-shit	ENST00000415680	ENST00000421622		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
5CDS-5UTR	ENST00000415680	ENST00000463557		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
5CDS-5UTR	ENST00000415680	ENST00000419765		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
intron-3CDS	ENST00000497516	ENST00000288513		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
intron-3CDS	ENST00000497516	ENST00000436657		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
intron-3CDS	ENST00000497516	ENST00000421622		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
intron-5UTR	ENST00000497516	ENST00000463557		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
intron-5UTR	ENST00000497516	ENST00000419765		TCGA	RV	BRCA	TCGA-C8-A1HM-01A	TRIM24	chr7	138258387	+	SVOPL	chr7	138281275	-
intron-3CDS	ENST00000354698	ENST00000296435		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000354698	ENST00000576243		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000427617	ENST00000296435		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000427617	ENST00000576243		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000412564	ENST00000296435		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000412564	ENST00000576243		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000440261	ENST00000296435		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000440261	ENST00000576243		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
3UTR-3CDS	ENST00000454212	ENST00000296435		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
3UTR-3CDS	ENST00000454212	ENST00000576243		TCGA	RV	BRCA	TCGA-AO-A1KR-01A	ZNF589	chr3	48299451	+	CAMP	chr3	48265844	+
5CDS-intron	ENST00000491148	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000491148	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000491148	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000282957	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000282957	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000282957	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000498639	ENST00000261531		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000498639	ENST00000554775		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000498639	ENST00000555761		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CPB1	chr3	148577970	+	SNW1	chr14	78189203	-
In-frame	ENST00000420696	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
In-frame	ENST00000401534	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
In-frame	ENST00000559240	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
In-frame	ENST00000367897	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
In-frame	ENST00000540236	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000560641	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000474046	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000485769	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000540246	ENST00000294818		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	PBX1	chr1	164532548	+	LRRC52	chr1	165532742	+
In-frame	ENST00000276416	ENST00000256404		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5CDS-intron	ENST00000276416	ENST00000521284		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5UTR-3CDS	ENST00000519513	ENST00000256404		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5UTR-intron	ENST00000519513	ENST00000521284		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
intron-3CDS	ENST00000399977	ENST00000256404		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
intron-intron	ENST00000399977	ENST00000521284		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5UTR-3CDS	ENST00000519335	ENST00000256404		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5UTR-intron	ENST00000519335	ENST00000521284		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
In-frame	ENST00000520292	ENST00000256404		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5CDS-intron	ENST00000520292	ENST00000521284		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
In-frame	ENST00000522268	ENST00000256404		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
5CDS-intron	ENST00000522268	ENST00000521284		TCGA	RV	BRCA	TCGA-E9-A22E-01A	BIN3	chr8	22526557	-	PEBP4	chr8	22584733	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-AC-A3QQ-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000355904	ENST00000338825		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000355904	ENST00000520657		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000522833	ENST00000338825		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000522833	ENST00000520657		TCGA	RV	BRCA	TCGA-S3-AA12-01A	GTF2E2	chr8	30510950	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000369061	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369061	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369061	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369061	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369061	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369061	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000357555	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000357555	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000357555	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000357555	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000357555	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000357555	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000358487	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000358487	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000358487	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000358487	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000358487	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000358487	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
Frame-shit	ENST00000356226	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
Frame-shit	ENST00000356226	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000356226	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000356226	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000356226	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000356226	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369060	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369060	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369060	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369060	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369060	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369060	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369059	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369059	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369059	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369059	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369059	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369059	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
In-frame	ENST00000346997	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
In-frame	ENST00000346997	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000346997	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000346997	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000346997	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000346997	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000457416	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000457416	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000457416	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000457416	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000457416	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000457416	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
Frame-shit	ENST00000351936	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
Frame-shit	ENST00000351936	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000351936	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000351936	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000351936	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
5CDS-intron	ENST00000351936	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000360144	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000360144	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000360144	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000360144	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000360144	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000360144	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369056	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000369056	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369056	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369056	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369056	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000369056	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000490349	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000490349	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000490349	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000490349	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000490349	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000490349	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000359354	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000359354	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000359354	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000359354	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000359354	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000359354	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000478859	ENST00000259486		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-3CDS	ENST00000478859	ENST00000427067		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000478859	ENST00000522167		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000478859	ENST00000522826		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000478859	ENST00000075322		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
intron-intron	ENST00000478859	ENST00000518109		TCGA	RV	BRCA	TCGA-LD-A7W5-01A	FGFR2	chr10	123274637	-	ENPP2	chr8	120650767	-
In-frame	ENST00000335221	ENST00000580974		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000335221	ENST00000299954		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000335221	ENST00000335257		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000335221	ENST00000581322		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000321892	ENST00000580974		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000321892	ENST00000299954		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000321892	ENST00000335257		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000321892	ENST00000581322		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000306378	ENST00000580974		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000306378	ENST00000299954		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000306378	ENST00000335257		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000306378	ENST00000581322		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000424123	ENST00000580974		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000424123	ENST00000299954		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000424123	ENST00000335257		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000424123	ENST00000581322		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000577770	ENST00000580974		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000577770	ENST00000299954		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000577770	ENST00000335257		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000577770	ENST00000581322		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	BPTF	chr17	65936772	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000368301	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000368301	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000361308	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000361308	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000347559	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000347559	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000368300	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000368300	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000368299	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000368299	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000448611	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000448611	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000368297	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000368297	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000473598	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000473598	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000392353	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
Frame-shit	ENST00000392353	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
3UTR-3CDS	ENST00000496738	ENST00000348225		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
3UTR-3CDS	ENST00000496738	ENST00000393083		TCGA	RV	BRCA	TCGA-A2-A3XU-01A	LMNA	chr1	156107656	+	PTN	chr7	136938384	-
5UTR-3CDS	ENST00000599470	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000599470	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000599470	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000321944	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000321944	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000321944	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000358301	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000358301	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000358301	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
3UTR-3CDS	ENST00000597766	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
3UTR-5UTR	ENST00000597766	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
3UTR-intron	ENST00000597766	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000593690	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000593690	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000593690	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000599386	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000599386	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000599386	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000435673	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000435673	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000435673	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000360442	ENST00000301244		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000360442	ENST00000587090		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000360442	ENST00000454580		TCGA	RV	BRCA	TCGA-EW-A2FV-01A	PAK4	chr19	39616559	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000254066	ENST00000398532		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000254066	ENST00000577454		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000254066	ENST00000578648		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
5CDS-5UTR	ENST00000254066	ENST00000579565		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000394089	ENST00000398532		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000394089	ENST00000577454		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000394089	ENST00000578648		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
5CDS-5UTR	ENST00000394089	ENST00000579565		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000425707	ENST00000398532		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000425707	ENST00000577454		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000425707	ENST00000578648		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
5CDS-5UTR	ENST00000425707	ENST00000579565		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000394086	ENST00000398532		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000394086	ENST00000577454		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000394086	ENST00000578648		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-5UTR	ENST00000394086	ENST00000579565		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000394081	ENST00000398532		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000394081	ENST00000577454		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000394081	ENST00000578648		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-5UTR	ENST00000394081	ENST00000579565		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000420042	ENST00000398532		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000420042	ENST00000577454		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000420042	ENST00000578648		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-5UTR	ENST00000420042	ENST00000579565		TCGA	RV	BRCA	TCGA-AR-A254-01A	RARA	chr17	38487648	+	MSL1	chr17	38282436	+
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
In-frame	ENST00000369774	ENST00000224950		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
In-frame	ENST00000369774	ENST00000369764		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
In-frame	ENST00000355946	ENST00000224950		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
In-frame	ENST00000355946	ENST00000369764		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	BRCA	TCGA-D8-A1JM-01A	SH3PXD2A	chr10	105495490	-	OBFC1	chr10	105648902	-
5UTR-3CDS	ENST00000370854	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000370854	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000370854	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000393760	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000393760	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000393760	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000370846	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000370846	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000370846	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000352634	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000352634	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000352634	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000353979	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000353979	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000353979	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000370842	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000370842	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000370842	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000345745	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3CDS	ENST00000345745	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
5UTR-3UTR	ENST00000345745	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
intron-3CDS	ENST00000495735	ENST00000349048		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
intron-3CDS	ENST00000495735	ENST00000403390		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
intron-3UTR	ENST00000495735	ENST00000496824		TCGA	RV	BRCA	TCGA-A7-A3RF-01A	ZDHHC16	chr10	99206110	+	PFKL	chr21	45731988	+
Frame-shit	ENST00000402198	ENST00000446450		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
In-frame	ENST00000402198	ENST00000354956		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000402198	ENST00000354449		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
5CDS-intron	ENST00000402198	ENST00000469654		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000402466	ENST00000446450		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
In-frame	ENST00000402466	ENST00000354956		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000402466	ENST00000354449		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
5CDS-intron	ENST00000402466	ENST00000469654		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000406341	ENST00000446450		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
In-frame	ENST00000406341	ENST00000354956		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000406341	ENST00000354449		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
5CDS-intron	ENST00000406341	ENST00000469654		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000407969	ENST00000446450		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
In-frame	ENST00000407969	ENST00000354956		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000407969	ENST00000354449		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
5CDS-intron	ENST00000407969	ENST00000469654		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000302463	ENST00000446450		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
In-frame	ENST00000302463	ENST00000354956		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000302463	ENST00000354449		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
5CDS-intron	ENST00000302463	ENST00000469654		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
3UTR-3CDS	ENST00000488236	ENST00000446450		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
3UTR-3CDS	ENST00000488236	ENST00000354956		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
3UTR-3CDS	ENST00000488236	ENST00000354449		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
3UTR-intron	ENST00000488236	ENST00000469654		TCGA	RV	BRCA	TCGA-EW-A6SA-01A	SETD5	chr3	9506356	+	ATG7	chr3	11596285	+
Frame-shit	ENST00000521425	ENST00000407775		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000521425	ENST00000520492		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000521425	ENST00000517361		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
5CDS-intron	ENST00000521425	ENST00000522296		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
5CDS-intron	ENST00000521425	ENST00000378472		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
In-frame	ENST00000262213	ENST00000407775		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
In-frame	ENST00000262213	ENST00000520492		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
In-frame	ENST00000262213	ENST00000517361		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
5CDS-intron	ENST00000262213	ENST00000522296		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
5CDS-intron	ENST00000262213	ENST00000378472		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000536748	ENST00000407775		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000536748	ENST00000520492		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000536748	ENST00000517361		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
5CDS-intron	ENST00000536748	ENST00000522296		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
5CDS-intron	ENST00000536748	ENST00000378472		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
intron-3CDS	ENST00000521049	ENST00000407775		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
intron-3CDS	ENST00000521049	ENST00000520492		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
intron-3CDS	ENST00000521049	ENST00000517361		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
intron-intron	ENST00000521049	ENST00000522296		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
intron-intron	ENST00000521049	ENST00000378472		TCGA	RV	BRCA	TCGA-A8-A097-01A	TRAM1	chr8	71506741	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000366603	ENST00000258229		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000366603	ENST00000344698		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000366603	ENST00000488780		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000366603	ENST00000520463		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000366603	ENST00000430153		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
Frame-shit	ENST00000264183	ENST00000258229		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000264183	ENST00000344698		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000264183	ENST00000488780		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000264183	ENST00000520463		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000264183	ENST00000430153		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
Frame-shit	ENST00000349213	ENST00000258229		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000349213	ENST00000344698		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000349213	ENST00000488780		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000349213	ENST00000520463		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000349213	ENST00000430153		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
intron-3CDS	ENST00000494543	ENST00000258229		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
intron-intron	ENST00000494543	ENST00000344698		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
intron-intron	ENST00000494543	ENST00000488780		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
intron-intron	ENST00000494543	ENST00000520463		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
intron-intron	ENST00000494543	ENST00000430153		TCGA	RV	BRCA	TCGA-OL-A5D8-01A	ARID4B	chr1	235420475	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000360265	ENST00000361737		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000545242		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000546334		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000296372		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000318888		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000514025		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000447017		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000361581		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000341937		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000407564		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000505872		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000428004		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000360265	ENST00000515079		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000361737		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000545242		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000546334		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000296372		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000318888		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000514025		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000447017		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000361581		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000341937		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000407564		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000505872		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000428004		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000358461	ENST00000515079		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000361737		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000545242		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000546334		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000296372		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000318888		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000514025		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000447017		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000361581		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000341937		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000407564		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000505872		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000428004		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000420658	ENST00000515079		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000361737		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000545242		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000546334		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000296372		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000318888		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000514025		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000447017		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000361581		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000341937		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000407564		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000505872		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000428004		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5CDS-intron	ENST00000382543	ENST00000515079		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000361737		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000545242		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000546334		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000296372		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000318888		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000514025		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000447017		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000361581		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000341937		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000407564		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000505872		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000428004		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
5UTR-intron	ENST00000513842	ENST00000515079		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	AFAP1	chr4	7776466	-	ABLIM2	chr4	7994654	-
Frame-shit	ENST00000253925	ENST00000264122		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000253925	ENST00000407712		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000253925	ENST00000394027		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000253925	ENST00000403724		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000253925	ENST00000405772		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-3UTR	ENST00000253925	ENST00000545639		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
Frame-shit	ENST00000389547	ENST00000264122		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000389547	ENST00000407712		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000389547	ENST00000394027		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000389547	ENST00000403724		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000389547	ENST00000405772		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-3UTR	ENST00000389547	ENST00000545639		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
intron-3CDS	ENST00000530548	ENST00000264122		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
intron-intron	ENST00000530548	ENST00000407712		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
intron-intron	ENST00000530548	ENST00000394027		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
intron-intron	ENST00000530548	ENST00000403724		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
intron-intron	ENST00000530548	ENST00000405772		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
intron-3UTR	ENST00000530548	ENST00000545639		TCGA	RV	BRCA	TCGA-AQ-A04H-01B	PPFIA1	chr11	70208594	+	CBLB	chr3	105459475	-
5CDS-intron	ENST00000260810	ENST00000356918		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000510769		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000429253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000510688		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000511262		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000383366		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000412440		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000507910		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000508196		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000260810	ENST00000426022		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000356918		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000510769		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000429253		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000510688		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000511262		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000383366		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000412440		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000507910		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000508196		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
intron-intron	ENST00000511439	ENST00000426022		TCGA	RV	BRCA	TCGA-A8-A06U-01A	TOPBP1	chr3	133356720	-	NEK11	chr3	131068401	+
In-frame	ENST00000306107	ENST00000487799		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000306107	ENST00000460851		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000306107	ENST00000406576		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000306107	ENST00000273435		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000306107	ENST00000383043		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000306107	ENST00000482471		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000472644	ENST00000487799		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000472644	ENST00000460851		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000472644	ENST00000406576		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000472644	ENST00000273435		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000472644	ENST00000383043		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000472644	ENST00000482471		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000481337	ENST00000487799		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000481337	ENST00000460851		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000481337	ENST00000406576		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000481337	ENST00000273435		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-intron	ENST00000481337	ENST00000383043		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-intron	ENST00000481337	ENST00000482471		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000486979	ENST00000487799		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000486979	ENST00000460851		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000486979	ENST00000406576		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000486979	ENST00000273435		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-intron	ENST00000486979	ENST00000383043		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-intron	ENST00000486979	ENST00000482471		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000389927	ENST00000487799		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000389927	ENST00000460851		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000389927	ENST00000406576		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-3CDS	ENST00000389927	ENST00000273435		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-intron	ENST00000389927	ENST00000383043		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
intron-intron	ENST00000389927	ENST00000482471		TCGA	RV	BRCA	TCGA-C8-A12L-01A	ALCAM	chr3	105086325	+	EIF2A	chr3	150270143	+
In-frame	ENST00000396594	ENST00000266397		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
In-frame	ENST00000396594	ENST00000540097		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
5CDS-intron	ENST00000396594	ENST00000544881		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000539815	ENST00000266397		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000539815	ENST00000540097		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-intron	ENST00000539815	ENST00000544881		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
In-frame	ENST00000543356	ENST00000266397		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
In-frame	ENST00000543356	ENST00000540097		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
5CDS-intron	ENST00000543356	ENST00000544881		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000539208	ENST00000266397		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000539208	ENST00000540097		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-intron	ENST00000539208	ENST00000544881		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000447283	ENST00000266397		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000447283	ENST00000540097		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-intron	ENST00000447283	ENST00000544881		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000377902	ENST00000266397		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000377902	ENST00000540097		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-intron	ENST00000377902	ENST00000544881		TCGA	RV	BRCA	TCGA-A2-A25F-01A	GNE	chr9	36276891	-	ERP27	chr12	15073982	-
intron-3CDS	ENST00000524630	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000524630	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000524630	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000524630	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000524630	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-3CDS	ENST00000529919	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000529919	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000529919	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000529919	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000529919	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-3CDS	ENST00000399039	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000399039	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000399039	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000399039	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
intron-intron	ENST00000399039	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000360682	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000360682	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000360682	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000360682	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000360682	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000361796	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361796	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361796	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361796	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361796	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000361391	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361391	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361391	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361391	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361391	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000530094	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000530094	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000530094	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000530094	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530094	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000428599	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000428599	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000428599	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000428599	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000428599	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000361332	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361332	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361332	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000361332	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000361332	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000527467	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000527467	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000527467	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000527467	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000527467	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000415361	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000415361	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000415361	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000415361	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000415361	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000532245	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532245	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532245	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532245	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532245	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000532463	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532463	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532463	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532463	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532463	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000528232	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000528232	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000528232	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000528232	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528232	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000529986	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529986	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529986	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529986	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529986	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000531014	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000531014	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000531014	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000531014	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000531014	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000358694	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000358694	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000358694	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000358694	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000358694	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000526772	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526772	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526772	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526772	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526772	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000532787	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532787	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532787	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532787	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532787	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000533667	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000533667	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000533667	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000533667	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000533667	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000529873	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529873	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529873	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529873	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529873	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000525902	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000525902	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000525902	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000525902	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000525902	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000529526	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529526	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529526	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000529526	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000529526	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000532649	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532649	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532649	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532649	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532649	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000426142	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000426142	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000426142	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000426142	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000426142	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000532844	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532844	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532844	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000532844	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000532844	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000528621	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000528621	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000528621	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000528621	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000528621	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000399050	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000399050	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000399050	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000399050	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000399050	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000526357	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526357	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526357	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526357	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526357	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000530748	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000530748	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000530748	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000530748	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000530748	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000534579	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000534579	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000534579	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000534579	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000534579	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000526938	ENST00000375789		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526938	ENST00000480913		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526938	ENST00000375787		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000526938	ENST00000375792		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000443533		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000493926		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000413532		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000411456		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000451411		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000488668		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000430482		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000437889		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000414455		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000490871		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000444699		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000454138		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000400062		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000466207		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000383409		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000400063		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000413655		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000494351		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000424790		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000447101		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000427126		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000473167		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000426149		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000526938	ENST00000434464		TCGA	RV	BRCA	TCGA-E9-A244-01A	CTNND1	chr11	57529518	+	DDAH2	chr6	31696522	-
Frame-shit	ENST00000317025	ENST00000315769		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000317025	ENST00000297737		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000317025	ENST00000523823		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000433384	ENST00000315769		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000433384	ENST00000297737		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000433384	ENST00000523823		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000527502	ENST00000315769		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000527502	ENST00000297737		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000527502	ENST00000523823		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000316985	ENST00000315769		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000316985	ENST00000297737		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
intron-intron	ENST00000316985	ENST00000523823		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000525081	ENST00000315769		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000525081	ENST00000297737		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
intron-intron	ENST00000525081	ENST00000523823		TCGA	RV	BRCA	TCGA-EW-A1IX-01A	WHSC1L1	chr8	38172165	-	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000269554	ENST00000449833		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000409161		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000423696		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000338508		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000409530		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000449116		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000357171		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000269554	ENST00000468619		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000449833		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000409161		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000423696		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000338508		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000409530		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000449116		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000357171		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000311500	ENST00000468619		TCGA	RV	BRCA	TCGA-AC-A2FB-01A	PIP4K2B	chr17	36933940	-	SHANK2	chr11	70742672	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	BRCA	TCGA-A7-A26E-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000301280	ENST00000262962		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	CHAF1A	chr19	4428887	+	CCDC94	chr19	4261991	+
intron-3CDS	ENST00000587368	ENST00000262962		TCGA	RV	BRCA	TCGA-OL-A5D7-01A	CHAF1A	chr19	4428887	+	CCDC94	chr19	4261991	+
5CDS-5UTR	ENST00000346798	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000346798	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000354192	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000348990	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000357903	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358918	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000359726	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000448388	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000440126	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000439274	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000487990		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000399272		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000489903		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000313806		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000443408		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000482533		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000481448		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000381132		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000381135		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
5UTR-5UTR	ENST00000474136	ENST00000492600		TCGA	RV	BRCA	TCGA-A8-A08P-01A	APP	chr21	27484296	-	RCAN1	chr21	35896008	-
Frame-shit	ENST00000472487	ENST00000370205		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MYSM1	chr1	59165657	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000472487	ENST00000495856		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MYSM1	chr1	59165657	-	ALG14	chr1	95448862	-
intron-3CDS	ENST00000493821	ENST00000370205		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MYSM1	chr1	59165657	-	ALG14	chr1	95448862	-
intron-intron	ENST00000493821	ENST00000495856		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	MYSM1	chr1	59165657	-	ALG14	chr1	95448862	-
Frame-shit	ENST00000394936	ENST00000406697		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394936	ENST00000328916		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394936	ENST00000360817		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394936	ENST00000402681		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394936	ENST00000495061		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
Frame-shit	ENST00000394934	ENST00000406697		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394934	ENST00000328916		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394934	ENST00000360817		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394934	ENST00000402681		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
5CDS-intron	ENST00000394934	ENST00000495061		TCGA	RV	BRCA	TCGA-A7-A5ZV-01A	PSAP	chr10	73576058	-	C1S	chr12	7096351	+
Frame-shit	ENST00000441669	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000441669	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000441669	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000441669	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000441669	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000441669	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
Frame-shit	ENST00000316891	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000316891	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000316891	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000316891	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000316891	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000316891	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
Frame-shit	ENST00000372818	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000372818	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000372818	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000372818	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000372818	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000372818	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-3CDS	ENST00000491865	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000491865	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000491865	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000491865	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000491865	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000491865	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-3CDS	ENST00000541099	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000541099	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000541099	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000541099	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000541099	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000541099	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-3CDS	ENST00000537440	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000537440	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000537440	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000537440	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000537440	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000537440	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-3CDS	ENST00000537223	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000537223	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000537223	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000537223	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000537223	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000537223	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-3CDS	ENST00000545233	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000545233	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000545233	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000545233	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-5UTR	ENST00000545233	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5UTR-intron	ENST00000545233	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
Frame-shit	ENST00000544981	ENST00000445067		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000544981	ENST00000369744		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000544981	ENST00000369748		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000544981	ENST00000466741		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-5UTR	ENST00000544981	ENST00000524472		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000544981	ENST00000529459		TCGA	RV	BRCA	TCGA-XX-A89A-01A	TRIT1	chr1	40348990	-	CHI3L2	chr1	111772474	+
5CDS-intron	ENST00000491148	ENST00000257497		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000491148	ENST00000376911		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000491148	ENST00000491192		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000282957	ENST00000257497		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000282957	ENST00000376911		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000282957	ENST00000491192		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000498639	ENST00000257497		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000498639	ENST00000376911		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000498639	ENST00000491192		TCGA	RV	BRCA	TCGA-AR-A252-01A	CPB1	chr3	148577970	+	ANXA1	chr9	75772570	+
5CDS-5UTR	ENST00000371000	ENST00000485760		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000371236		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000371234		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000420954		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000439789		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000414851		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000371231		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000371000	ENST00000371230		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000485760		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000371236		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000371234		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000420954		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000439789		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000414851		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000371231		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000262345	ENST00000371230		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000485760		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000371236		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000371234		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000420954		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000439789		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000414851		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000371231		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000541374	ENST00000371230		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000485760		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000371236		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000371234		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000420954		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000439789		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000414851		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000371231		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000544434	ENST00000371230		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000485760		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000371236		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000371234		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000420954		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000439789		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000414851		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000371231		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
3UTR-5UTR	ENST00000465396	ENST00000371230		TCGA	RV	BRCA	TCGA-AN-A0AM-01A	IL12RB2	chr1	67845806	+	DAB1	chr1	57611102	-
In-frame	ENST00000360943	ENST00000225298		TCGA	RV	BRCA	TCGA-EW-A6SC-01A	UBE2Z	chr17	47000299	+	UTP18	chr17	49371264	+
In-frame	ENST00000367669	ENST00000367350		TCGA	RV	BRCA	TCGA-BH-A203-01A	RFWD2	chr1	176118142	-	KIF14	chr1	200578056	-
In-frame	ENST00000308769	ENST00000367350		TCGA	RV	BRCA	TCGA-BH-A203-01A	RFWD2	chr1	176118142	-	KIF14	chr1	200578056	-
In-frame	ENST00000375300	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000375300	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000375300	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000375300	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000375300	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000292055	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000292055	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000292055	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000292055	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000292055	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000375288	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000375288	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000375288	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000375288	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000375288	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000434315	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000434315	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000434315	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000434315	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000434315	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000542607	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000542607	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000542607	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000542607	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000542607	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000446921	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000446921	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000446921	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000446921	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000446921	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000488337	ENST00000580825		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000488337	ENST00000254079		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000488337	ENST00000579000		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000488337	ENST00000394265		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000488337	ENST00000394267		TCGA	RV	BRCA	TCGA-EW-A2FR-01A	SIK3	chr11	116968859	-	PPP1R1B	chr17	37785423	+
5CDS-intron	ENST00000215730	ENST00000249053		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	SNAP29	chr22	21224821	+	IGLL1	chr22	23917269	-
5CDS-intron	ENST00000215730	ENST00000330377		TCGA	RV	BRCA	TCGA-PE-A5DE-01A	SNAP29	chr22	21224821	+	IGLL1	chr22	23917269	-
5CDS-3UTR	ENST00000525428	ENST00000528638		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000525428	ENST00000313578		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000263309	ENST00000528638		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000263309	ENST00000313578		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000525064	ENST00000528638		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000525064	ENST00000313578		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000532069	ENST00000528638		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000532069	ENST00000313578		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000528364	ENST00000528638		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
5CDS-3UTR	ENST00000528364	ENST00000313578		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000533957	ENST00000528638		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000533957	ENST00000313578		TCGA	RV	BRCA	TCGA-D8-A27G-01A	CLNS1A	chr11	77336008	-	AQP11	chr11	77314601	+
intron-3CDS	ENST00000426898	ENST00000539393		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
intron-3CDS	ENST00000426898	ENST00000240652		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
intron-3CDS	ENST00000426898	ENST00000542023		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000425752	ENST00000539393		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
Frame-shit	ENST00000425752	ENST00000240652		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000425752	ENST00000542023		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000423947	ENST00000539393		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
Frame-shit	ENST00000423947	ENST00000240652		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000423947	ENST00000542023		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000435642	ENST00000539393		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
Frame-shit	ENST00000435642	ENST00000240652		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000435642	ENST00000542023		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000320560	ENST00000539393		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
Frame-shit	ENST00000320560	ENST00000240652		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000320560	ENST00000542023		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000441606	ENST00000539393		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
Frame-shit	ENST00000441606	ENST00000240652		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000441606	ENST00000542023		TCGA	RV	BRCA	TCGA-E2-A1L8-01A	ANO6	chr12	45816845	+	IAPP	chr12	21531171	+
In-frame	ENST00000584601	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000584601	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000584601	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000406381	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000406381	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000406381	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000541774	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000541774	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000541774	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000445658	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000445658	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000445658	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000540147	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000540147	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000540147	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000584450	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000584450	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000584450	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000269571	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000269571	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000269571	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000578199	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000578199	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000578199	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000540042	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
In-frame	ENST00000540042	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000540042	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
intron-3CDS	ENST00000584888	ENST00000430627		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
intron-3CDS	ENST00000584888	ENST00000447079		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
intron-intron	ENST00000584888	ENST00000559545		TCGA	RV	BRCA	TCGA-BH-A204-01A	ERBB2	chr17	37868701	+	CDK12	chr17	37680927	+
5CDS-5UTR	ENST00000424789	ENST00000245865		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000424789	ENST00000375840		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000424789	ENST00000392950		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000424789	ENST00000336174		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000424789	ENST00000447001		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000424789	ENST00000582137		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-intron	ENST00000424789	ENST00000580039		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000424789	ENST00000579340		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000245865		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000375840		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000392950		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000336174		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000447001		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000582137		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-intron	ENST00000389520	ENST00000580039		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
5CDS-5UTR	ENST00000389520	ENST00000579340		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	TANC2	chr17	61086987	+	STRADA	chr17	61805773	-
In-frame	ENST00000361337	ENST00000269127		TCGA	RV	BRCA	TCGA-C8-A273-01A	TOP1	chr20	39729993	+	C17orf64	chr17	58503144	+
intron-intron	ENST00000520468	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
intron-intron	ENST00000520468	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000297564	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000297564	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000520271	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000520271	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000517682	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000517682	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000524245	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000524245	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000522940	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000522940	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
intron-intron	ENST00000518171	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
intron-intron	ENST00000518171	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
intron-intron	ENST00000523016	ENST00000484427		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
intron-intron	ENST00000523016	ENST00000371764		TCGA	RV	BRCA	TCGA-D8-A1JT-01A	COX6C	chr8	100890379	-	DDX27	chr20	47849303	+
5CDS-5UTR	ENST00000283249	ENST00000474820		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000283249	ENST00000348849		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000283249	ENST00000409075		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000283249	ENST00000409289		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000283249	ENST00000392753		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000283249	ENST00000409972		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5UTR-5UTR	ENST00000485635	ENST00000474820		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5UTR-5UTR	ENST00000485635	ENST00000348849		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5UTR-5UTR	ENST00000485635	ENST00000409075		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5UTR-5UTR	ENST00000485635	ENST00000409289		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5UTR-5UTR	ENST00000485635	ENST00000392753		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5UTR-5UTR	ENST00000485635	ENST00000409972		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000428609	ENST00000474820		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000428609	ENST00000348849		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000428609	ENST00000409075		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000428609	ENST00000409289		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000428609	ENST00000392753		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000428609	ENST00000409972		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409967	ENST00000474820		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409967	ENST00000348849		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409967	ENST00000409075		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409967	ENST00000409289		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409967	ENST00000392753		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409967	ENST00000409972		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409872	ENST00000474820		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409872	ENST00000348849		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409872	ENST00000409075		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409872	ENST00000409289		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409872	ENST00000392753		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-5UTR	ENST00000409872	ENST00000409972		TCGA	RV	BRCA	TCGA-D8-A1XK-01A	ITGB6	chr2	161030485	-	RBMS1	chr2	161159998	-
5CDS-3UTR	ENST00000264414	ENST00000305123		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5CDS-intron	ENST00000264414	ENST00000498335		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
intron-3UTR	ENST00000344951	ENST00000305123		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
intron-intron	ENST00000344951	ENST00000498335		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5CDS-3UTR	ENST00000409096	ENST00000305123		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5CDS-intron	ENST00000409096	ENST00000498335		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5CDS-3UTR	ENST00000409777	ENST00000305123		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5CDS-intron	ENST00000409777	ENST00000498335		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5UTR-3UTR	ENST00000432260	ENST00000305123		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5UTR-intron	ENST00000432260	ENST00000498335		TCGA	RV	BRCA	TCGA-E9-A1NE-01A	CUL3	chr2	225422376	-	IRS1	chr2	227600966	-
5UTR-3CDS	ENST00000335742	ENST00000296543		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-3CDS	ENST00000335742	ENST00000398947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-intron	ENST00000335742	ENST00000480277		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-intron	ENST00000335742	ENST00000515576		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
In-frame	ENST00000261509	ENST00000296543		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
In-frame	ENST00000261509	ENST00000398947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000261509	ENST00000480277		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000261509	ENST00000515576		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
In-frame	ENST00000505667	ENST00000296543		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
In-frame	ENST00000505667	ENST00000398947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000505667	ENST00000480277		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000505667	ENST00000515576		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
In-frame	ENST00000333488	ENST00000296543		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
In-frame	ENST00000333488	ENST00000398947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000333488	ENST00000480277		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000333488	ENST00000515576		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-3CDS	ENST00000512127	ENST00000296543		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-3CDS	ENST00000512127	ENST00000398947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-intron	ENST00000512127	ENST00000480277		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-intron	ENST00000512127	ENST00000515576		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
intron-3CDS	ENST00000507735	ENST00000296543		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
intron-3CDS	ENST00000507735	ENST00000398947		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
intron-intron	ENST00000507735	ENST00000480277		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
intron-intron	ENST00000507735	ENST00000515576		TCGA	RV	BRCA	TCGA-AN-A04C-01A	PALLD	chr4	169589519	+	NAA15	chr4	140291365	+
5UTR-3CDS	ENST00000391785	ENST00000370873		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-5UTR	ENST00000391785	ENST00000484488		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-5UTR	ENST00000391785	ENST00000370861		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-5UTR	ENST00000391785	ENST00000370858		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-3CDS	ENST00000301093	ENST00000370873		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-5UTR	ENST00000301093	ENST00000484488		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-5UTR	ENST00000301093	ENST00000370861		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5UTR-5UTR	ENST00000301093	ENST00000370858		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
intron-3CDS	ENST00000540331	ENST00000370873		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
intron-5UTR	ENST00000540331	ENST00000484488		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
intron-5UTR	ENST00000540331	ENST00000370861		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
intron-5UTR	ENST00000540331	ENST00000370858		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
3UTR-3CDS	ENST00000478039	ENST00000370873		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
3UTR-5UTR	ENST00000478039	ENST00000484488		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
3UTR-5UTR	ENST00000478039	ENST00000370861		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
3UTR-5UTR	ENST00000478039	ENST00000370858		TCGA	RV	BRCA	TCGA-UL-AAZ6-01A	ZNF701	chr19	53073583	+	PSMA7	chr20	60716000	-
5CDS-5UTR	ENST00000373184	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373184	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373184	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373184	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000373184	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373187	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373187	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373187	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373187	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000373187	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000356100	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000356100	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000356100	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000356100	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000356100	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373190	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373190	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373190	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373190	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000373190	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373193	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373193	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373193	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373193	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000373193	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373198	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373198	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373198	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373198	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000373198	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373201	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373201	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373201	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000373201	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000373201	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000485499	ENST00000341724		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000485499	ENST00000372004		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000485499	ENST00000371998		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000485499	ENST00000371997		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
intron-intron	ENST00000485499	ENST00000497292		TCGA	RV	BRCA	TCGA-E2-A15F-01A	PTPRT	chr20	40944363	-	NCOA3	chr20	46211927	+
5UTR-3CDS	ENST00000497914	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000497914	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000497914	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000497914	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000497914	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000223341	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000223341	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000223341	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000223341	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000223341	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000336086	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000336086	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000336086	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000336086	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000336086	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000402306	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000402306	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000402306	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000402306	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000402306	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000443736	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000443736	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000443736	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000443736	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000443736	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000453200	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000453200	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000453200	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000453200	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000453200	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000447717	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-3CDS	ENST00000447717	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000447717	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000447717	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5UTR-intron	ENST00000447717	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000446958	ENST00000319386		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000446958	ENST00000407970		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000446958	ENST00000482748		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000446958	ENST00000451887		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
5CDS-intron	ENST00000446958	ENST00000409210		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	URGCP	chr7	43927014	-	CCDC129	chr7	31681790	+
In-frame	ENST00000376351	ENST00000356711		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
In-frame	ENST00000376351	ENST00000251041		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
In-frame	ENST00000376351	ENST00000357550		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
In-frame	ENST00000376351	ENST00000457511		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
5CDS-intron	ENST00000376351	ENST00000467639		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
intron-3CDS	ENST00000490549	ENST00000356711		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
intron-3CDS	ENST00000490549	ENST00000251041		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
intron-3CDS	ENST00000490549	ENST00000357550		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
intron-3CDS	ENST00000490549	ENST00000457511		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
intron-intron	ENST00000490549	ENST00000467639		TCGA	RV	BRCA	TCGA-C8-A1HO-01A	GPR158	chr10	25465251	+	MYO16	chr13	109644724	+
Frame-shit	ENST00000375664	ENST00000376236		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000375664	ENST00000356785		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000375664	ENST00000493857		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
Frame-shit	ENST00000375646	ENST00000376236		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000375646	ENST00000356785		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000375646	ENST00000493857		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
Frame-shit	ENST00000347934	ENST00000376236		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000347934	ENST00000356785		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000347934	ENST00000493857		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
Frame-shit	ENST00000354911	ENST00000376236		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000354911	ENST00000356785		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000354911	ENST00000493857		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
Frame-shit	ENST00000428935	ENST00000376236		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000428935	ENST00000356785		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
5CDS-intron	ENST00000428935	ENST00000493857		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
3UTR-3CDS	ENST00000532233	ENST00000376236		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
3UTR-intron	ENST00000532233	ENST00000356785		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
3UTR-intron	ENST00000532233	ENST00000493857		TCGA	RV	BRCA	TCGA-AO-A0JI-01A	WAC	chr10	28824686	+	APBB1IP	chr10	26849034	+
intron-5UTR	ENST00000254066	ENST00000570565		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000254066	ENST00000442502		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000254066	ENST00000340813		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000254066	ENST00000451037		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000254066	ENST00000285273		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-intron	ENST00000254066	ENST00000571918		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000394089	ENST00000570565		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000394089	ENST00000442502		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000394089	ENST00000340813		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000394089	ENST00000451037		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000394089	ENST00000285273		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-intron	ENST00000394089	ENST00000571918		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000425707	ENST00000570565		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000425707	ENST00000442502		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000425707	ENST00000340813		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000425707	ENST00000451037		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-5UTR	ENST00000425707	ENST00000285273		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
5UTR-intron	ENST00000425707	ENST00000571918		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394086	ENST00000570565		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394086	ENST00000442502		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394086	ENST00000340813		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394086	ENST00000451037		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394086	ENST00000285273		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-intron	ENST00000394086	ENST00000571918		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394081	ENST00000570565		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394081	ENST00000442502		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394081	ENST00000340813		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394081	ENST00000451037		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000394081	ENST00000285273		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-intron	ENST00000394081	ENST00000571918		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000420042	ENST00000570565		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000420042	ENST00000442502		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000420042	ENST00000340813		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000420042	ENST00000451037		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000420042	ENST00000285273		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-intron	ENST00000420042	ENST00000571918		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	RARA	chr17	38474700	+	CA10	chr17	50149753	-
intron-5UTR	ENST00000464524	ENST00000510994		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
intron-5UTR	ENST00000464524	ENST00000354910		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
intron-5UTR	ENST00000464524	ENST00000514612		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
intron-5UTR	ENST00000464524	ENST00000511751		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000418611	ENST00000510994		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000418611	ENST00000354910		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000418611	ENST00000514612		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000418611	ENST00000511751		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5CDS-5UTR	ENST00000389061	ENST00000510994		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5CDS-5UTR	ENST00000389061	ENST00000354910		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5CDS-5UTR	ENST00000389061	ENST00000514612		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5CDS-5UTR	ENST00000389061	ENST00000511751		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000541314	ENST00000510994		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000541314	ENST00000354910		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000541314	ENST00000514612		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
5UTR-5UTR	ENST00000541314	ENST00000511751		TCGA	RV	BRCA	TCGA-BH-A18P-01A	SACM1L	chr3	45730989	+	ANAPC13	chr3	134201773	-
Frame-shit	ENST00000598742	ENST00000596827		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5CDS-intron	ENST00000598742	ENST00000602098		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5CDS-intron	ENST00000598742	ENST00000269945		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5UTR-3CDS	ENST00000221975	ENST00000596827		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5UTR-intron	ENST00000221975	ENST00000602098		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5UTR-intron	ENST00000221975	ENST00000269945		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
Frame-shit	ENST00000593863	ENST00000596827		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5CDS-intron	ENST00000593863	ENST00000602098		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
5CDS-intron	ENST00000593863	ENST00000269945		TCGA	RV	BRCA	TCGA-A8-A07G-01A	RPS19	chr19	42365281	+	DMRTC2	chr19	42354594	+
In-frame	ENST00000447632	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000447632	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000447632	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000447632	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000447632	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000447632	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000413473	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000413473	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000413473	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000413473	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000413473	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000413473	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000262675	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000262675	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000262675	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000262675	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000262675	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000262675	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000451380	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000451380	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000451380	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000451380	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000451380	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000451380	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000371750	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000371750	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000371750	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000371750	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000371750	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000371750	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000371747	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000371747	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000371747	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000371747	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000371747	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000371747	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000262676	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000262676	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000262676	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000262676	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000262676	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000262676	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000530004	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000530004	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000530004	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000530004	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000530004	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
In-frame	ENST00000530004	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
5UTR-3CDS	ENST00000534098	ENST00000507853		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
5UTR-3CDS	ENST00000534098	ENST00000335847		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
5UTR-3CDS	ENST00000534098	ENST00000329411		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
5UTR-3CDS	ENST00000534098	ENST00000355791		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
5UTR-3CDS	ENST00000534098	ENST00000505118		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
5UTR-3CDS	ENST00000534098	ENST00000536021		TCGA	RV	BRCA	TCGA-BH-A209-01A	TTC39A	chr1	51760063	-	CRISP1	chr6	49819842	-
Frame-shit	ENST00000261497	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000261497	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
Frame-shit	ENST00000537526	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000360416		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000379980		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000396239		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000455117	ENST00000269243		TCGA	RV	BRCA	TCGA-A8-A093-01A	USP22	chr17	20919065	-	MYH10	chr17	8508300	-
5CDS-3UTR	ENST00000262367	ENST00000571790		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	CREBBP	chr16	3819175	-	NUBP1	chr16	10846467	+
5CDS-3UTR	ENST00000262367	ENST00000283027		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	CREBBP	chr16	3819175	-	NUBP1	chr16	10846467	+
5CDS-3UTR	ENST00000262367	ENST00000433392		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	CREBBP	chr16	3819175	-	NUBP1	chr16	10846467	+
5CDS-3UTR	ENST00000382070	ENST00000571790		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	CREBBP	chr16	3819175	-	NUBP1	chr16	10846467	+
5CDS-3UTR	ENST00000382070	ENST00000283027		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	CREBBP	chr16	3819175	-	NUBP1	chr16	10846467	+
5CDS-3UTR	ENST00000382070	ENST00000433392		TCGA	RV	BRCA	TCGA-B6-A0IA-01A	CREBBP	chr16	3819175	-	NUBP1	chr16	10846467	+
Frame-shit	ENST00000284061	ENST00000476049		TCGA	RV	BRCA	TCGA-C8-A275-01A	DGKE	chr17	54912620	+	KRT222	chr17	38814002	-
In-frame	ENST00000284061	ENST00000394052		TCGA	RV	BRCA	TCGA-C8-A275-01A	DGKE	chr17	54912620	+	KRT222	chr17	38814002	-
3UTR-3CDS	ENST00000576869	ENST00000476049		TCGA	RV	BRCA	TCGA-C8-A275-01A	DGKE	chr17	54912620	+	KRT222	chr17	38814002	-
3UTR-3CDS	ENST00000576869	ENST00000394052		TCGA	RV	BRCA	TCGA-C8-A275-01A	DGKE	chr17	54912620	+	KRT222	chr17	38814002	-
In-frame	ENST00000572810	ENST00000476049		TCGA	RV	BRCA	TCGA-C8-A275-01A	DGKE	chr17	54912620	+	KRT222	chr17	38814002	-
Frame-shit	ENST00000572810	ENST00000394052		TCGA	RV	BRCA	TCGA-C8-A275-01A	DGKE	chr17	54912620	+	KRT222	chr17	38814002	-
intron-3CDS	ENST00000380934	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
intron-3CDS	ENST00000380934	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000380959	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000380959	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000380953	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000380953	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000397575	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000397575	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000397581	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000397581	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000397579	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000397579	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
intron-3CDS	ENST00000543693	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
intron-3CDS	ENST00000543693	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
intron-3CDS	ENST00000380924	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
intron-3CDS	ENST00000380924	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000380921	ENST00000233099		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000380921	ENST00000354531		TCGA	RV	BRCA	TCGA-A1-A0SB-01A	NFIB	chr9	14313481	-	HEATR5B	chr2	37208937	-
5CDS-5UTR	ENST00000424789	ENST00000300408		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TANC2	chr17	61086987	+	PHB	chr17	47490653	-
5CDS-5UTR	ENST00000424789	ENST00000511832		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TANC2	chr17	61086987	+	PHB	chr17	47490653	-
5CDS-intron	ENST00000424789	ENST00000508009		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TANC2	chr17	61086987	+	PHB	chr17	47490653	-
5CDS-5UTR	ENST00000389520	ENST00000300408		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TANC2	chr17	61086987	+	PHB	chr17	47490653	-
5CDS-5UTR	ENST00000389520	ENST00000511832		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TANC2	chr17	61086987	+	PHB	chr17	47490653	-
5CDS-intron	ENST00000389520	ENST00000508009		TCGA	RV	BRCA	TCGA-D8-A27N-01A	TANC2	chr17	61086987	+	PHB	chr17	47490653	-
Frame-shit	ENST00000300408	ENST00000311351		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000300408	ENST00000520755		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000300408	ENST00000522515		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000511832	ENST00000311351		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000511832	ENST00000520755		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000511832	ENST00000522515		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
5UTR-3CDS	ENST00000508009	ENST00000311351		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
5UTR-3CDS	ENST00000508009	ENST00000520755		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
5UTR-5UTR	ENST00000508009	ENST00000522515		TCGA	RV	BRCA	TCGA-A2-A0CU-01A	PHB	chr17	47490539	-	LSM1	chr8	38029551	-
In-frame	ENST00000324856	ENST00000542507		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
In-frame	ENST00000324856	ENST00000373812		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
5CDS-intron	ENST00000324856	ENST00000541996		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
5CDS-3UTR	ENST00000324856	ENST00000478283		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
In-frame	ENST00000457599	ENST00000542507		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
In-frame	ENST00000457599	ENST00000373812		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
5CDS-intron	ENST00000457599	ENST00000541996		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
5CDS-3UTR	ENST00000457599	ENST00000478283		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
In-frame	ENST00000374152	ENST00000542507		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
In-frame	ENST00000374152	ENST00000373812		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
5CDS-intron	ENST00000374152	ENST00000541996		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
5CDS-3UTR	ENST00000374152	ENST00000478283		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
intron-3CDS	ENST00000540690	ENST00000542507		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
intron-3CDS	ENST00000540690	ENST00000373812		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
intron-intron	ENST00000540690	ENST00000541996		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
intron-3UTR	ENST00000540690	ENST00000478283		TCGA	RV	BRCA	TCGA-E2-A14T-01A	ARID1A	chr1	27059283	+	YTHDF2	chr1	29064170	+
In-frame	ENST00000377298	ENST00000377263		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000400904		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000537447		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000377258		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000377256		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000361311	ENST00000377263		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000400904		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000537447		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000377258		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000377256		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000377288	ENST00000377263		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000400904		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000537447		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000377258		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000377256		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000377263		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000400904		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000537447		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000377258		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000377256		TCGA	RV	BRCA	TCGA-AR-A0TU-01A	CLSTN1	chr1	9833330	-	CTNNBIP1	chr1	9910834	-
5CDS-intron	ENST00000269397	ENST00000534836		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000269397	ENST00000541045		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000269397	ENST00000536908		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000269397	ENST00000378738		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000269397	ENST00000394832		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000269397	ENST00000320856		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000269397	ENST00000394835		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000534836		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000541045		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000536908		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000378738		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000394832		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000320856		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000448310	ENST00000394835		TCGA	RV	BRCA	TCGA-A8-A09C-01A	CBX4	chr17	77811636	-	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000359008	ENST00000573169		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000359008	ENST00000573584		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000328189	ENST00000573169		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000328189	ENST00000573584		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000369458	ENST00000573169		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000369458	ENST00000573584		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000539893	ENST00000573169		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
5CDS-intron	ENST00000539893	ENST00000573584		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
intron-intron	ENST00000463461	ENST00000573169		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
intron-intron	ENST00000463461	ENST00000573584		TCGA	RV	BRCA	TCGA-E9-A244-01A	VTCN1	chr1	117695713	-	NUP88	chr17	5292280	-
In-frame	ENST00000290649	ENST00000287497		TCGA	RV	BRCA	TCGA-D8-A27W-01A	AMFR	chr16	56419831	-	ITGAM	chr16	31332562	+
In-frame	ENST00000290649	ENST00000544665		TCGA	RV	BRCA	TCGA-D8-A27W-01A	AMFR	chr16	56419831	-	ITGAM	chr16	31332562	+
intron-3CDS	ENST00000564283	ENST00000287497		TCGA	RV	BRCA	TCGA-D8-A27W-01A	AMFR	chr16	56419831	-	ITGAM	chr16	31332562	+
intron-3CDS	ENST00000564283	ENST00000544665		TCGA	RV	BRCA	TCGA-D8-A27W-01A	AMFR	chr16	56419831	-	ITGAM	chr16	31332562	+
Frame-shit	ENST00000546079	ENST00000301146		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000546079	ENST00000291764		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000541297	ENST00000301146		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000541297	ENST00000291764		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000337392	ENST00000301146		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000337392	ENST00000291764		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
3UTR-3CDS	ENST00000589158	ENST00000301146		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
3UTR-3CDS	ENST00000589158	ENST00000291764		TCGA	RV	BRCA	TCGA-A7-A26I-01B	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
5CDS-5UTR	ENST00000218516	ENST00000316594		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	GLA	chrX	100662698	-	HNRNPH2	chrX	100666924	+
5UTR-5UTR	ENST00000479445	ENST00000316594		TCGA	RV	BRCA	TCGA-S3-A6ZF-01A	GLA	chrX	100662698	-	HNRNPH2	chrX	100666924	+
5UTR-3CDS	ENST00000216181	ENST00000300105		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36962540	-
5UTR-intron	ENST00000216181	ENST00000480002		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36962540	-
intron-3CDS	ENST00000475726	ENST00000300105		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36962540	-
intron-intron	ENST00000475726	ENST00000480002		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36962540	-
intron-3CDS	ENST00000401701	ENST00000300105		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36962540	-
intron-intron	ENST00000401701	ENST00000480002		TCGA	RV	BRCA	TCGA-BH-A0BW-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36962540	-
Frame-shit	ENST00000360184	ENST00000422945		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000556068		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000554442		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000328724		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000350249		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000445439		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000334743		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000557095		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000556260		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000556946		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
5CDS-intron	ENST00000360184	ENST00000557714		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-3CDS	ENST00000556791	ENST00000422945		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000556068		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000554442		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000328724		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000350249		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000445439		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000334743		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000557095		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000556260		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000556946		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
intron-intron	ENST00000556791	ENST00000557714		TCGA	RV	BRCA	TCGA-A8-A06R-01A	DYNC1H1	chr14	102478807	+	PPP2R5C	chr14	102378738	+
In-frame	ENST00000537645	ENST00000339841		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF460	chr19	57796045	+	ELSPBP1	chr19	48517428	+
5CDS-intron	ENST00000537645	ENST00000597519		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF460	chr19	57796045	+	ELSPBP1	chr19	48517428	+
In-frame	ENST00000360338	ENST00000339841		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF460	chr19	57796045	+	ELSPBP1	chr19	48517428	+
5CDS-intron	ENST00000360338	ENST00000597519		TCGA	RV	BRCA	TCGA-A2-A0EV-01A	ZNF460	chr19	57796045	+	ELSPBP1	chr19	48517428	+
5CDS-3UTR	ENST00000371711	ENST00000313949		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000371711	ENST00000371098		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000371711	ENST00000371075		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000371711	ENST00000371100		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000371099		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000371102		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000371711	ENST00000464624		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000306120		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000371095		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000371085		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000354359		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000265620		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000306090		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000371711	ENST00000371081		TCGA	RV	BRCA	TCGA-BH-A0H9-01A	B4GALT5	chr20	48330113	-	GNAS	chr20	57470667	+
3UTR-3CDS	ENST00000465664	ENST00000443584		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
3UTR-3CDS	ENST00000465664	ENST00000449996		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
3UTR-3CDS	ENST00000465664	ENST00000262406		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
3UTR-intron	ENST00000465664	ENST00000577186		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
In-frame	ENST00000273668	ENST00000443584		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
Frame-shit	ENST00000273668	ENST00000449996		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
Frame-shit	ENST00000273668	ENST00000262406		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
5CDS-intron	ENST00000273668	ENST00000577186		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
In-frame	ENST00000451944	ENST00000443584		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
Frame-shit	ENST00000451944	ENST00000449996		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
Frame-shit	ENST00000451944	ENST00000262406		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
5CDS-intron	ENST00000451944	ENST00000577186		TCGA	RV	BRCA	TCGA-AO-A03L-01A	EAF2	chr3	121554238	+	RGS9	chr17	63221120	+
5CDS-5UTR	ENST00000261769	ENST00000469379		TCGA	RV	BRCA	TCGA-B6-A0RN-01A	CDH1	chr16	68842751	+	DEXI	chr16	11023416	-
5CDS-3UTR	ENST00000261769	ENST00000331808		TCGA	RV	BRCA	TCGA-B6-A0RN-01A	CDH1	chr16	68842751	+	DEXI	chr16	11023416	-
5CDS-5UTR	ENST00000422392	ENST00000469379		TCGA	RV	BRCA	TCGA-B6-A0RN-01A	CDH1	chr16	68842751	+	DEXI	chr16	11023416	-
5CDS-3UTR	ENST00000422392	ENST00000331808		TCGA	RV	BRCA	TCGA-B6-A0RN-01A	CDH1	chr16	68842751	+	DEXI	chr16	11023416	-
3UTR-5UTR	ENST00000562836	ENST00000469379		TCGA	RV	BRCA	TCGA-B6-A0RN-01A	CDH1	chr16	68842751	+	DEXI	chr16	11023416	-
3UTR-3UTR	ENST00000562836	ENST00000331808		TCGA	RV	BRCA	TCGA-B6-A0RN-01A	CDH1	chr16	68842751	+	DEXI	chr16	11023416	-
5CDS-5UTR	ENST00000400274	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000400274	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000400274	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000400274	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000427143	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000427143	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000427143	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000427143	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000318711	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000318711	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000318711	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000318711	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000417564	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000417564	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000417564	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000417564	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000457905	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000457905	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000457905	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000457905	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000466639	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000466639	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000466639	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000466639	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000435722	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000435722	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000435722	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000435722	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000479654	ENST00000536668		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000479654	ENST00000544994		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000479654	ENST00000228811		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000479654	ENST00000540107		TCGA	RV	BRCA	TCGA-AO-A0J2-01A	DIP2A	chr21	47910632	+	PRR4	chr12	11001006	-
5UTR-3CDS	ENST00000357395	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000357395	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000357395	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000357395	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000357395	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000357395	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000357395	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5UTR-intron	ENST00000357395	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358025	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000358025	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000344113	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000344113	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000341472	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000341472	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000356081	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000356081	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000554584	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000554584	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555002	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000555002	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000394768	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000394768	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000556725	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000556725	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553455	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000553455	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000555022	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000555022	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554805	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000554805	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000458046	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000458046	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000604948		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000557565		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000250377		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000321130		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000534898		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000603544		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000441438	ENST00000605870		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000441438	ENST00000603588		TCGA	RV	BRCA	TCGA-A8-A079-01A	SYNE2	chr14	64453335	+	KIAA0391	chr14	35735933	+
Frame-shit	ENST00000342483	ENST00000373314		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ZNF79	chr9	130198282	+	FAM129B	chr9	130269710	-
Frame-shit	ENST00000342483	ENST00000373312		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ZNF79	chr9	130198282	+	FAM129B	chr9	130269710	-
5CDS-5UTR	ENST00000342483	ENST00000468379		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ZNF79	chr9	130198282	+	FAM129B	chr9	130269710	-
Frame-shit	ENST00000543471	ENST00000373314		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ZNF79	chr9	130198282	+	FAM129B	chr9	130269710	-
Frame-shit	ENST00000543471	ENST00000373312		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ZNF79	chr9	130198282	+	FAM129B	chr9	130269710	-
5CDS-5UTR	ENST00000543471	ENST00000468379		TCGA	RV	BRCA	TCGA-AO-A12G-01A	ZNF79	chr9	130198282	+	FAM129B	chr9	130269710	-
In-frame	ENST00000261772	ENST00000323786		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70316523	-	COG4	chr16	70553634	-
In-frame	ENST00000261772	ENST00000393612		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70316523	-	COG4	chr16	70553634	-
In-frame	ENST00000261772	ENST00000564653		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70316523	-	COG4	chr16	70553634	-
intron-3CDS	ENST00000564359	ENST00000323786		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70316523	-	COG4	chr16	70553634	-
intron-3CDS	ENST00000564359	ENST00000393612		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70316523	-	COG4	chr16	70553634	-
intron-3CDS	ENST00000564359	ENST00000564653		TCGA	RV	BRCA	TCGA-BH-A0B9-01A	AARS	chr16	70316523	-	COG4	chr16	70553634	-
In-frame	ENST00000318217	ENST00000258991		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000318217	ENST00000583097		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000318217	ENST00000584379		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
5CDS-intron	ENST00000318217	ENST00000581812		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-3CDS	ENST00000394649	ENST00000258991		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-3CDS	ENST00000394649	ENST00000583097		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-3CDS	ENST00000394649	ENST00000584379		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-intron	ENST00000394649	ENST00000581812		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000579584	ENST00000258991		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000579584	ENST00000583097		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000579584	ENST00000584379		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
5CDS-intron	ENST00000579584	ENST00000581812		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-3CDS	ENST00000584232	ENST00000258991		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-3CDS	ENST00000584232	ENST00000583097		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-3CDS	ENST00000584232	ENST00000584379		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-intron	ENST00000584232	ENST00000581812		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000583621	ENST00000258991		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000583621	ENST00000583097		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
In-frame	ENST00000583621	ENST00000584379		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
5CDS-intron	ENST00000583621	ENST00000581812		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	MYO1D	chr17	31203796	-	TEX2	chr17	62248559	-
intron-intron	ENST00000373314	ENST00000371799		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
intron-intron	ENST00000373314	ENST00000277415		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
intron-intron	ENST00000373314	ENST00000252854		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
intron-intron	ENST00000373314	ENST00000371801		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
intron-intron	ENST00000373314	ENST00000371796		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
intron-intron	ENST00000373314	ENST00000392991		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
intron-intron	ENST00000373314	ENST00000371793		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000371799		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000277415		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000252854		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000371801		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000371796		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000392991		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5CDS-intron	ENST00000373312	ENST00000371793		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000371799		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000277415		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000252854		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000371801		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000371796		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000392991		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-intron	ENST00000468379	ENST00000371793		TCGA	RV	BRCA	TCGA-A8-A08X-01A	FAM129B	chr9	130331099	-	OLFM1	chr9	137982041	+
5UTR-3CDS	ENST00000366882	ENST00000265421		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
5UTR-3CDS	ENST00000366882	ENST00000538005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
5UTR-intron	ENST00000366882	ENST00000530566		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
5UTR-intron	ENST00000366882	ENST00000521492		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-3CDS	ENST00000354448	ENST00000265421		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-3CDS	ENST00000354448	ENST00000538005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-intron	ENST00000354448	ENST00000530566		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-intron	ENST00000354448	ENST00000521492		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
Frame-shit	ENST00000539869	ENST00000265421		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
Frame-shit	ENST00000539869	ENST00000538005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
5CDS-intron	ENST00000539869	ENST00000530566		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
5CDS-intron	ENST00000539869	ENST00000521492		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-3CDS	ENST00000535229	ENST00000265421		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-3CDS	ENST00000535229	ENST00000538005		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-intron	ENST00000535229	ENST00000530566		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
intron-intron	ENST00000535229	ENST00000521492		TCGA	RV	BRCA	TCGA-D8-A13Z-01A	PDE10A	chr6	166075435	-	POLB	chr8	42229081	+
5UTR-3CDS	ENST00000346329	ENST00000560410		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-3CDS	ENST00000346329	ENST00000216802		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-5UTR	ENST00000346329	ENST00000471700		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-3CDS	ENST00000301843	ENST00000560410		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-3CDS	ENST00000301843	ENST00000216802		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-5UTR	ENST00000301843	ENST00000471700		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
3UTR-3CDS	ENST00000527622	ENST00000560410		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
3UTR-3CDS	ENST00000527622	ENST00000216802		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
3UTR-5UTR	ENST00000527622	ENST00000471700		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-3CDS	ENST00000376561	ENST00000560410		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-3CDS	ENST00000376561	ENST00000216802		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-5UTR	ENST00000376561	ENST00000471700		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
intron-3CDS	ENST00000538675	ENST00000560410		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
intron-3CDS	ENST00000538675	ENST00000216802		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
intron-5UTR	ENST00000538675	ENST00000471700		TCGA	RV	BRCA	TCGA-A2-A0EQ-01A	CTTN	chr11	70244720	+	PSME2	chr14	24612880	-
5UTR-3CDS	ENST00000315596	ENST00000372899		TCGA	RV	BRCA	TCGA-BH-A209-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-3CDS	ENST00000315596	ENST00000372901		TCGA	RV	BRCA	TCGA-BH-A209-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-3UTR	ENST00000315596	ENST00000372883		TCGA	RV	BRCA	TCGA-BH-A209-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-intron	ENST00000315596	ENST00000372903		TCGA	RV	BRCA	TCGA-BH-A209-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
intron-3CDS	ENST00000391826	ENST00000359125		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000391826	ENST00000357249		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000391826	ENST00000359689		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000391826	ENST00000354587		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000391826	ENST00000360480		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000391826	ENST00000370224		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000391826	ENST00000344462		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-intron	ENST00000391826	ENST00000482957		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-intron	ENST00000391826	ENST00000344425		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000359125		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000357249		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000359689		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000354587		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000360480		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000370224		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000595948	ENST00000344462		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000595948	ENST00000482957		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000595948	ENST00000344425		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000359125		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000357249		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000359689		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000354587		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000360480		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000370224		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000341114	ENST00000344462		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000341114	ENST00000482957		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000341114	ENST00000344425		TCGA	RV	BRCA	TCGA-A2-A3XW-01A	IL4I1	chr19	50430951	-	KCNQ2	chr20	62076717	-
In-frame	ENST00000255681	ENST00000534749		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
In-frame	ENST00000255681	ENST00000436757		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
In-frame	ENST00000255681	ENST00000356404		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
5CDS-intron	ENST00000255681	ENST00000526450		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
5UTR-3CDS	ENST00000538595	ENST00000534749		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
5UTR-3CDS	ENST00000538595	ENST00000436757		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
5UTR-3CDS	ENST00000538595	ENST00000356404		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
5UTR-intron	ENST00000538595	ENST00000526450		TCGA	RV	BRCA	TCGA-AC-A4ZE-01A	MACROD1	chr11	63918711	-	PITPNM1	chr11	67269557	-
In-frame	ENST00000254066	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
Frame-shit	ENST00000254066	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
In-frame	ENST00000394089	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
Frame-shit	ENST00000394089	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
In-frame	ENST00000425707	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
Frame-shit	ENST00000425707	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000394086	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000394086	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000394081	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000394081	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000420042	ENST00000336915		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000420042	ENST00000584924		TCGA	RV	BRCA	TCGA-B6-A0IN-01A	RARA	chr17	38487648	+	SKAP1	chr17	46214699	-
In-frame	ENST00000399788	ENST00000327087		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
In-frame	ENST00000399788	ENST00000546188		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
In-frame	ENST00000399788	ENST00000356134		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
5CDS-intron	ENST00000399788	ENST00000538154		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
intron-3CDS	ENST00000540838	ENST00000327087		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
intron-3CDS	ENST00000540838	ENST00000546188		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
intron-3CDS	ENST00000540838	ENST00000356134		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
intron-intron	ENST00000540838	ENST00000538154		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
In-frame	ENST00000382815	ENST00000327087		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
In-frame	ENST00000382815	ENST00000546188		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
In-frame	ENST00000382815	ENST00000356134		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
5CDS-intron	ENST00000382815	ENST00000538154		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	KDM5A	chr12	427272	-	ANO2	chr12	5708795	-
5CDS-3UTR	ENST00000379303	ENST00000379226		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-intron	ENST00000379303	ENST00000476598		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000379303	ENST00000379220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000336430	ENST00000379226		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-intron	ENST00000336430	ENST00000476598		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000336430	ENST00000379220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000379295	ENST00000379226		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-intron	ENST00000379295	ENST00000476598		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000379295	ENST00000379220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000492081	ENST00000379226		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-intron	ENST00000492081	ENST00000476598		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
5CDS-3UTR	ENST00000492081	ENST00000379220		TCGA	RV	BRCA	TCGA-A7-A13D-01B	ACOT9	chrX	23748644	-	APOO	chrX	23851729	-
intron-3CDS	ENST00000411426	ENST00000300190		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	FAM111B	chr11	58877179	+	MS4A5	chr11	60198269	+
intron-intron	ENST00000411426	ENST00000534071		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	FAM111B	chr11	58877179	+	MS4A5	chr11	60198269	+
intron-3CDS	ENST00000529618	ENST00000300190		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	FAM111B	chr11	58877179	+	MS4A5	chr11	60198269	+
intron-intron	ENST00000529618	ENST00000534071		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	FAM111B	chr11	58877179	+	MS4A5	chr11	60198269	+
In-frame	ENST00000343597	ENST00000300190		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	FAM111B	chr11	58877179	+	MS4A5	chr11	60198269	+
5CDS-intron	ENST00000343597	ENST00000534071		TCGA	RV	BRCA	TCGA-B6-A0IG-01A	FAM111B	chr11	58877179	+	MS4A5	chr11	60198269	+
Frame-shit	ENST00000317025	ENST00000327040		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000317025	ENST00000440756		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000317025	ENST00000286485		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000317025	ENST00000428502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000317025	ENST00000523619		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
5CDS-intron	ENST00000317025	ENST00000520789		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000433384	ENST00000327040		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000433384	ENST00000440756		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000433384	ENST00000286485		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000433384	ENST00000428502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000433384	ENST00000523619		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
5CDS-intron	ENST00000433384	ENST00000520789		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000527502	ENST00000327040		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000527502	ENST00000440756		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000527502	ENST00000286485		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000527502	ENST00000428502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
Frame-shit	ENST00000527502	ENST00000523619		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
5CDS-intron	ENST00000527502	ENST00000520789		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000316985	ENST00000327040		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000316985	ENST00000440756		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000316985	ENST00000286485		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000316985	ENST00000428502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000316985	ENST00000523619		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-intron	ENST00000316985	ENST00000520789		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000525081	ENST00000327040		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000525081	ENST00000440756		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000525081	ENST00000286485		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000525081	ENST00000428502		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000525081	ENST00000523619		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-intron	ENST00000525081	ENST00000520789		TCGA	RV	BRCA	TCGA-BH-A18U-01A	WHSC1L1	chr8	38146005	-	PSD3	chr8	18513195	-
intron-3CDS	ENST00000400473	ENST00000471389		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000400473	ENST00000394647		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000400473	ENST00000431610		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000400473	ENST00000460382		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000400473	ENST00000463855		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3UTR	ENST00000400473	ENST00000472835		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
Frame-shit	ENST00000256925	ENST00000471389		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
In-frame	ENST00000256925	ENST00000394647		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
In-frame	ENST00000256925	ENST00000431610		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
In-frame	ENST00000256925	ENST00000460382		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
In-frame	ENST00000256925	ENST00000463855		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000256925	ENST00000472835		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000585061	ENST00000471389		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000585061	ENST00000394647		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000585061	ENST00000431610		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000585061	ENST00000460382		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000585061	ENST00000463855		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3UTR	ENST00000585061	ENST00000472835		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000420687	ENST00000471389		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000420687	ENST00000394647		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000420687	ENST00000431610		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000420687	ENST00000460382		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000420687	ENST00000463855		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
intron-3UTR	ENST00000420687	ENST00000472835		TCGA	RV	BRCA	TCGA-S3-AA12-01A	CABLES1	chr18	20716571	+	FTO	chr16	54145674	+
In-frame	ENST00000359428	ENST00000372309		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000359428	ENST00000372302		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000359428	ENST00000247291		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000359428	ENST00000372300		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-3UTR	ENST00000359428	ENST00000472942		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-3UTR	ENST00000359428	ENST00000372298		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000359428	ENST00000372297		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000359428	ENST00000372312		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000359428	ENST00000372301		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000411637	ENST00000372309		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000411637	ENST00000372302		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000411637	ENST00000247291		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000411637	ENST00000372300		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-3UTR	ENST00000411637	ENST00000472942		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-3UTR	ENST00000411637	ENST00000372298		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000411637	ENST00000372297		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000411637	ENST00000372312		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000411637	ENST00000372301		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000451030	ENST00000372309		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000451030	ENST00000372302		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000451030	ENST00000247291		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000451030	ENST00000372300		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-3UTR	ENST00000451030	ENST00000472942		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-3UTR	ENST00000451030	ENST00000372298		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000451030	ENST00000372297		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000451030	ENST00000372312		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
5CDS-5UTR	ENST00000451030	ENST00000372301		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000483497	ENST00000372309		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000483497	ENST00000372302		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000483497	ENST00000247291		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000483497	ENST00000372300		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3UTR	ENST00000483497	ENST00000472942		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3UTR	ENST00000483497	ENST00000372298		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-5UTR	ENST00000483497	ENST00000372297		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-5UTR	ENST00000483497	ENST00000372312		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-5UTR	ENST00000483497	ENST00000372301		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000465486	ENST00000372309		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000465486	ENST00000372302		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000465486	ENST00000247291		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3CDS	ENST00000465486	ENST00000372300		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3UTR	ENST00000465486	ENST00000472942		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-3UTR	ENST00000465486	ENST00000372298		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-5UTR	ENST00000465486	ENST00000372297		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-5UTR	ENST00000465486	ENST00000372312		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
intron-5UTR	ENST00000465486	ENST00000372301		TCGA	RV	BRCA	TCGA-E9-A22G-01A	NUP214	chr9	134006223	+	AIF1L	chr9	133986984	+
In-frame	ENST00000394156	ENST00000394249		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000394156	ENST00000361919		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000394156	ENST00000361188		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000394156	ENST00000442656		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
5CDS-intron	ENST00000394156	ENST00000556129		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000268603	ENST00000394249		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000268603	ENST00000361919		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000268603	ENST00000361188		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
In-frame	ENST00000268603	ENST00000442656		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
5CDS-intron	ENST00000268603	ENST00000556129		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
Frame-shit	ENST00000566827	ENST00000394249		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
Frame-shit	ENST00000566827	ENST00000361919		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
Frame-shit	ENST00000566827	ENST00000361188		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
Frame-shit	ENST00000566827	ENST00000442656		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
5CDS-intron	ENST00000566827	ENST00000556129		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
intron-3CDS	ENST00000569624	ENST00000394249		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
intron-3CDS	ENST00000569624	ENST00000361919		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
intron-3CDS	ENST00000569624	ENST00000361188		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
intron-3CDS	ENST00000569624	ENST00000442656		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
intron-intron	ENST00000569624	ENST00000556129		TCGA	RV	BRCA	TCGA-A2-A4S1-01A	CDH11	chr16	65005482	-	PRC1	chr15	91512853	-
5CDS-5UTR	ENST00000340353	ENST00000530069		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000340353	ENST00000349015		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000340353	ENST00000531881		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
intron-5UTR	ENST00000532959	ENST00000530069		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
intron-5UTR	ENST00000532959	ENST00000349015		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
intron-5UTR	ENST00000532959	ENST00000531881		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000305494	ENST00000530069		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000305494	ENST00000349015		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000305494	ENST00000531881		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5UTR-5UTR	ENST00000535167	ENST00000530069		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5UTR-5UTR	ENST00000535167	ENST00000349015		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5UTR-5UTR	ENST00000535167	ENST00000531881		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000355734	ENST00000530069		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000355734	ENST00000349015		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000355734	ENST00000531881		TCGA	RV	BRCA	TCGA-A8-A09C-01A	TMEM135	chr11	86749228	+	ALDH3B2	chr11	67435106	-
In-frame	ENST00000175091	ENST00000254351		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LAPTM4A	chr2	20251171	-	SDC1	chr2	20405185	-
In-frame	ENST00000175091	ENST00000381150		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LAPTM4A	chr2	20251171	-	SDC1	chr2	20405185	-
In-frame	ENST00000175091	ENST00000403076		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LAPTM4A	chr2	20251171	-	SDC1	chr2	20405185	-
5CDS-5UTR	ENST00000175091	ENST00000482879		TCGA	RV	BRCA	TCGA-AC-A6IW-01A	LAPTM4A	chr2	20251171	-	SDC1	chr2	20405185	-
In-frame	ENST00000317506	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5CDS-intron	ENST00000317506	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
In-frame	ENST00000448631	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5CDS-intron	ENST00000448631	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000536251	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000536251	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
intron-3CDS	ENST00000411657	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
intron-intron	ENST00000411657	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
In-frame	ENST00000602677	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5CDS-intron	ENST00000602677	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
Frame-shit	ENST00000425512	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5CDS-intron	ENST00000425512	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000602887	ENST00000366932		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000602887	ENST00000491428		TCGA	RV	BRCA	TCGA-E2-A109-01A	RANBP10	chr16	67839331	-	RRP15	chr1	218504290	+
In-frame	ENST00000373566	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373566	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373566	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373566	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373563	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373563	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373563	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000373563	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409480	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409480	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409480	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409480	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409547	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409547	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409547	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409547	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409196	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409196	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409196	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409196	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409451	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409451	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409451	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
In-frame	ENST00000409451	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000482666	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000482666	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000482666	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000482666	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000452341	ENST00000409613		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000452341	ENST00000264059		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000452341	ENST00000409708		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
intron-3CDS	ENST00000452341	ENST00000410095		TCGA	RV	BRCA	TCGA-B6-A0IJ-01A	GIGYF2	chr2	233613792	+	EFHD1	chr2	233537019	+
Frame-shit	ENST00000355327	ENST00000544974		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000355327	ENST00000560369		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000355327	ENST00000260382		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000355327	ENST00000443425		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000355327	ENST00000560691		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
5CDS-3UTR	ENST00000355327	ENST00000436542		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
5CDS-3UTR	ENST00000355327	ENST00000560158		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000261862	ENST00000544974		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000261862	ENST00000560369		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000261862	ENST00000260382		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000261862	ENST00000443425		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
Frame-shit	ENST00000261862	ENST00000560691		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
5CDS-3UTR	ENST00000261862	ENST00000436542		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
5CDS-3UTR	ENST00000261862	ENST00000560158		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000544974		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000560369		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000260382		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000443425		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000357769	ENST00000560691		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000357769	ENST00000436542		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000357769	ENST00000560158		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000544974		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000560369		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000260382		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000443425		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3CDS	ENST00000567838	ENST00000560691		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000567838	ENST00000436542		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
intron-3UTR	ENST00000567838	ENST00000560158		TCGA	RV	BRCA	TCGA-GI-A2C8-01A	THSD4	chr15	71447271	+	LRRC49	chr15	71329518	+
In-frame	ENST00000369851	ENST00000234677		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GNAI3	chr1	110091460	+	SARS	chr1	109766600	+
In-frame	ENST00000369851	ENST00000369923		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GNAI3	chr1	110091460	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000369851	ENST00000468588		TCGA	RV	BRCA	TCGA-E2-A14P-01A	GNAI3	chr1	110091460	+	SARS	chr1	109766600	+
In-frame	ENST00000357402	ENST00000561482		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000357402	ENST00000160827		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000400750		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000400751		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000569382		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-intron	ENST00000357402	ENST00000563263		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-3CDS	ENST00000452209	ENST00000561482		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-3CDS	ENST00000452209	ENST00000160827		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000400750		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000400751		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000569382		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-intron	ENST00000452209	ENST00000563263		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000395353	ENST00000561482		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000395353	ENST00000160827		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000400750		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000400751		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000569382		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-intron	ENST00000395353	ENST00000563263		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000566554	ENST00000561482		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000566554	ENST00000160827		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000400750		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000400751		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000569382		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-intron	ENST00000566554	ENST00000563263		TCGA	RV	BRCA	TCGA-BH-A18V-06A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000308436	ENST00000405837		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000308436	ENST00000433053		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000308436	ENST00000278893		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000308436	ENST00000360796		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000308436	ENST00000403550		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000308436	ENST00000407022		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000308436	ENST00000421906		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000308436	ENST00000537604		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000405837		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000433053		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000278893		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000360796		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000403550		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000407022		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
In-frame	ENST00000476907	ENST00000421906		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000476907	ENST00000537604		TCGA	RV	BRCA	TCGA-B6-A0I1-01A	TUT1	chr11	62356503	-	BSCL2	chr11	62462183	-
5UTR-3CDS	ENST00000374012	ENST00000357156		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000374012	ENST00000480759		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000374012	ENST00000417166		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000374012	ENST00000300469		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000374012	ENST00000374846		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3CDS	ENST00000439301	ENST00000357156		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000439301	ENST00000480759		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000439301	ENST00000417166		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000439301	ENST00000300469		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3UTR	ENST00000439301	ENST00000374846		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
3UTR-3CDS	ENST00000481202	ENST00000357156		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
3UTR-3UTR	ENST00000481202	ENST00000480759		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
3UTR-3UTR	ENST00000481202	ENST00000417166		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
3UTR-3UTR	ENST00000481202	ENST00000300469		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
3UTR-3UTR	ENST00000481202	ENST00000374846		TCGA	RV	BRCA	TCGA-E2-A1LE-01A	PHF20	chr20	34360001	+	DYNLRB1	chr20	33114073	+
5UTR-3CDS	ENST00000351960	ENST00000225402		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-intron	ENST00000351960	ENST00000590321		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-3CDS	ENST00000358965	ENST00000225402		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-intron	ENST00000358965	ENST00000590321		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-3CDS	ENST00000393695	ENST00000225402		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-intron	ENST00000393695	ENST00000590321		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-3CDS	ENST00000543450	ENST00000225402		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
5UTR-intron	ENST00000543450	ENST00000590321		TCGA	RV	BRCA	TCGA-A8-A08S-01A	NUMA1	chr11	71780888	-	AATF	chr17	35343916	+
In-frame	ENST00000358232	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000358232	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000358232	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000358232	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000358232	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000358232	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000358232	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000351393	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000351393	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000351393	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000351393	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000351393	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000351393	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000351393	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000442325	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000442325	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000442325	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000442325	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000442325	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000442325	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000442325	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000423854	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000423854	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000423854	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000423854	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000423854	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000423854	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000423854	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000350494	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000350494	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000350494	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000350494	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000350494	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000350494	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000350494	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000542824	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000542824	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000542824	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000542824	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000542824	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
In-frame	ENST00000542824	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000542824	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000542050	ENST00000413393		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000542050	ENST00000436190		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000542050	ENST00000300249		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000542050	ENST00000538170		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000542050	ENST00000588910		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000542050	ENST00000589699		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
3UTR-intron	ENST00000542050	ENST00000590793		TCGA	RV	BRCA	TCGA-A2-A0D2-01A	ELP2	chr18	33734962	+	MAPRE2	chr18	32681910	+
5CDS-5UTR	ENST00000522532	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-01A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
Frame-shit	ENST00000532485	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
Frame-shit	ENST00000532485	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
3UTR-3CDS	ENST00000530182	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
3UTR-3CDS	ENST00000530182	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
intron-3CDS	ENST00000526597	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
intron-3CDS	ENST00000526597	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
Frame-shit	ENST00000533873	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
Frame-shit	ENST00000533873	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
5UTR-3CDS	ENST00000538157	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
5UTR-3CDS	ENST00000538157	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
intron-3CDS	ENST00000544113	ENST00000281038		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
intron-3CDS	ENST00000544113	ENST00000528850		TCGA	RV	BRCA	TCGA-AN-A0G0-01A	ACER3	chr11	76572123	+	NARS2	chr11	78180359	-
In-frame	ENST00000486715	ENST00000355893		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000484955		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000359117		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000471745		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-3UTR	ENST00000486715	ENST00000497004		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000469452		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000482628		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000478894		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000486715	ENST00000392822		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
In-frame	ENST00000478576	ENST00000355893		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000484955		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000359117		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000471745		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-3UTR	ENST00000478576	ENST00000497004		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000469452		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000482628		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000478894		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000478576	ENST00000392822		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
In-frame	ENST00000264263	ENST00000355893		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000484955		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000359117		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000471745		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-3UTR	ENST00000264263	ENST00000497004		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000469452		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000482628		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000478894		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000264263	ENST00000392822		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-3CDS	ENST00000490261	ENST00000355893		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000484955		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000359117		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000471745		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-3UTR	ENST00000490261	ENST00000497004		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000469452		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000482628		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000478894		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000490261	ENST00000392822		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	GFM1	chr3	158384175	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000351773	ENST00000541509		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000351773	ENST00000265382		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
5CDS-intron	ENST00000351773	ENST00000474356		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000361085	ENST00000541509		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
5CDS-5UTR	ENST00000361085	ENST00000265382		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
5CDS-intron	ENST00000361085	ENST00000474356		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
3UTR-5UTR	ENST00000479469	ENST00000541509		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
3UTR-5UTR	ENST00000479469	ENST00000265382		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
3UTR-intron	ENST00000479469	ENST00000474356		TCGA	RV	BRCA	TCGA-AR-A2LL-01A	ZNF37A	chr10	38385560	+	PIP5K1B	chr9	71433377	+
Frame-shit	ENST00000398645	ENST00000579585		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000398645	ENST00000584573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000398645	ENST00000361733		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000398645	ENST00000361357		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000398645	ENST00000577395		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
5CDS-intron	ENST00000398645	ENST00000577784		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000529006	ENST00000579585		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000529006	ENST00000584573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000529006	ENST00000361733		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000529006	ENST00000361357		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000529006	ENST00000577395		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
5CDS-intron	ENST00000529006	ENST00000577784		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
3UTR-3CDS	ENST00000526258	ENST00000579585		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
3UTR-3CDS	ENST00000526258	ENST00000584573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
3UTR-3CDS	ENST00000526258	ENST00000361733		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
3UTR-3CDS	ENST00000526258	ENST00000361357		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
3UTR-3CDS	ENST00000526258	ENST00000577395		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
3UTR-intron	ENST00000526258	ENST00000577784		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000308783	ENST00000579585		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000308783	ENST00000584573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000308783	ENST00000361733		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000308783	ENST00000361357		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000308783	ENST00000577395		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-intron	ENST00000308783	ENST00000577784		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000530342	ENST00000579585		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000530342	ENST00000584573		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000530342	ENST00000361733		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000530342	ENST00000361357		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-3CDS	ENST00000530342	ENST00000577395		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
intron-intron	ENST00000530342	ENST00000577784		TCGA	RV	BRCA	TCGA-A1-A0SN-01A	KDM2A	chr11	66999431	+	MAP3K3	chr17	61759126	+
Frame-shit	ENST00000374980	ENST00000376309		TCGA	RV	BRCA	TCGA-C8-A273-01A	EIF2S2	chr20	32699902	-	DEFB123	chr20	30037832	+
Frame-shit	ENST00000323798	ENST00000589876		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000323798	ENST00000245925		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000323798	ENST00000536630		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000323798	ENST00000587152		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5CDS-intron	ENST00000323798	ENST00000586902		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000263276	ENST00000589876		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000263276	ENST00000245925		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000263276	ENST00000536630		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000263276	ENST00000587152		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5CDS-intron	ENST00000263276	ENST00000586902		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000541188	ENST00000589876		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000541188	ENST00000245925		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000541188	ENST00000536630		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000541188	ENST00000587152		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5CDS-intron	ENST00000541188	ENST00000586902		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5UTR-3CDS	ENST00000544287	ENST00000589876		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5UTR-3CDS	ENST00000544287	ENST00000245925		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5UTR-3CDS	ENST00000544287	ENST00000536630		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5UTR-3CDS	ENST00000544287	ENST00000587152		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5UTR-intron	ENST00000544287	ENST00000586902		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000540532	ENST00000589876		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000540532	ENST00000245925		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000540532	ENST00000536630		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000540532	ENST00000587152		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
5CDS-intron	ENST00000540532	ENST00000586902		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
intron-3CDS	ENST00000457974	ENST00000589876		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
intron-3CDS	ENST00000457974	ENST00000245925		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
intron-3CDS	ENST00000457974	ENST00000536630		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
intron-3CDS	ENST00000457974	ENST00000587152		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
intron-intron	ENST00000457974	ENST00000586902		TCGA	RV	BRCA	TCGA-BH-A1F6-01A	GYS1	chr19	49485512	-	EML2	chr19	46116929	-
Frame-shit	ENST00000354293	ENST00000221403		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
5CDS-intron	ENST00000354293	ENST00000523250		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
5CDS-intron	ENST00000354293	ENST00000522614		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
3UTR-3CDS	ENST00000600199	ENST00000221403		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
3UTR-intron	ENST00000600199	ENST00000523250		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
3UTR-intron	ENST00000600199	ENST00000522614		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
Frame-shit	ENST00000359032	ENST00000221403		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
5CDS-intron	ENST00000359032	ENST00000523250		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
5CDS-intron	ENST00000359032	ENST00000522614		TCGA	RV	BRCA	TCGA-A2-A25D-01A	AP2A1	chr19	50270457	+	DHDH	chr19	49442706	+
In-frame	ENST00000591776	ENST00000237380		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	EIF1	chr17	39846193	+	MED28	chr4	17621524	+
5CDS-intron	ENST00000591776	ENST00000499786		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	EIF1	chr17	39846193	+	MED28	chr4	17621524	+
In-frame	ENST00000469257	ENST00000237380		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	EIF1	chr17	39846193	+	MED28	chr4	17621524	+
5CDS-intron	ENST00000469257	ENST00000499786		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	EIF1	chr17	39846193	+	MED28	chr4	17621524	+
intron-3CDS	ENST00000310837	ENST00000237380		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	EIF1	chr17	39846193	+	MED28	chr4	17621524	+
intron-intron	ENST00000310837	ENST00000499786		TCGA	RV	BRCA	TCGA-D8-A1X5-01A	EIF1	chr17	39846193	+	MED28	chr4	17621524	+
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	BRCA	TCGA-A8-A09M-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000316059	ENST00000310653		TCGA	RV	BRCA	TCGA-A8-A093-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000336083		TCGA	RV	BRCA	TCGA-A8-A093-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000536566		TCGA	RV	BRCA	TCGA-A8-A093-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
Frame-shit	ENST00000316059	ENST00000541588		TCGA	RV	BRCA	TCGA-A8-A093-01A	ZFP91	chr11	58352357	+	RAB6A	chr11	73390765	-
intron-3CDS	ENST00000409262	ENST00000409731		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	TET3	chr2	74230293	+	ACTG2	chr2	74135800	+
intron-3CDS	ENST00000409262	ENST00000345517		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	TET3	chr2	74230293	+	ACTG2	chr2	74135800	+
intron-intron	ENST00000409262	ENST00000409918		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	TET3	chr2	74230293	+	ACTG2	chr2	74135800	+
intron-intron	ENST00000409262	ENST00000409624		TCGA	RV	BRCA	TCGA-B6-A3ZX-01A	TET3	chr2	74230293	+	ACTG2	chr2	74135800	+
5UTR-3CDS	ENST00000328631	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000328631	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000328631	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000340879	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000340879	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000340879	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000432678	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000432678	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000432678	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000431721	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000431721	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000431721	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000449610	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000449610	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000449610	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000413298	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000413298	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000413298	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000450045	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000450045	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000450045	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000446860	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000446860	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000446860	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000417896	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000417896	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000417896	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000443964	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000443964	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000443964	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000436134	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000436134	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000436134	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000453202	ENST00000265563		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000453202	ENST00000454963		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000453202	ENST00000296446		TCGA	RV	BRCA	TCGA-A1-A0SK-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
In-frame	ENST00000376980	ENST00000378289		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000453695		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378246		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000357717		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378278		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000396817		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378254		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378255		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378249		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378258		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000378242		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
5CDS-intron	ENST00000376980	ENST00000492201		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-3CDS	ENST00000376946	ENST00000378289		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000453695		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378246		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000357717		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378278		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000396817		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378254		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378255		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378249		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378258		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000378242		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000376946	ENST00000492201		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-3CDS	ENST00000483085	ENST00000378289		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000453695		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378246		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000357717		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378278		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000396817		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378254		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378255		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378249		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378258		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000378242		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
intron-intron	ENST00000483085	ENST00000492201		TCGA	RV	BRCA	TCGA-A8-A081-01A	DNAJC1	chr10	22171211	-	DCLRE1C	chr10	14941311	-
In-frame	ENST00000394287	ENST00000285238		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000394287	ENST00000515707		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000394287	ENST00000427699		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000394287	ENST00000510891		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
In-frame	ENST00000300651	ENST00000285238		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000300651	ENST00000515707		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000300651	ENST00000427699		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
5CDS-intron	ENST00000300651	ENST00000510891		TCGA	RV	BRCA	TCGA-BH-A0AW-01A	MED1	chr17	37604051	-	ABCC3	chr17	48733193	+
In-frame	ENST00000260197	ENST00000392793		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
In-frame	ENST00000260197	ENST00000264037		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
5CDS-intron	ENST00000260197	ENST00000478058		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
3UTR-3CDS	ENST00000532451	ENST00000392793		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
3UTR-3CDS	ENST00000532451	ENST00000264037		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
3UTR-intron	ENST00000532451	ENST00000478058		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000525532	ENST00000392793		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000525532	ENST00000264037		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-intron	ENST00000525532	ENST00000478058		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000532694	ENST00000392793		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000532694	ENST00000264037		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-intron	ENST00000532694	ENST00000478058		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000534286	ENST00000392793		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000534286	ENST00000264037		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-intron	ENST00000534286	ENST00000478058		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000527934	ENST00000392793		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000527934	ENST00000264037		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
intron-intron	ENST00000527934	ENST00000478058		TCGA	RV	BRCA	TCGA-E9-A22G-01A	SORL1	chr11	121403261	+	TECTA	chr11	121058541	+
In-frame	ENST00000335221	ENST00000443584		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000335221	ENST00000449996		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000335221	ENST00000262406		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
5CDS-3UTR	ENST00000335221	ENST00000577186		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000321892	ENST00000443584		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000321892	ENST00000449996		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000321892	ENST00000262406		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
5CDS-3UTR	ENST00000321892	ENST00000577186		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000306378	ENST00000443584		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000306378	ENST00000449996		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000306378	ENST00000262406		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
5CDS-3UTR	ENST00000306378	ENST00000577186		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000424123	ENST00000443584		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000424123	ENST00000449996		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
In-frame	ENST00000424123	ENST00000262406		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
5CDS-3UTR	ENST00000424123	ENST00000577186		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
intron-3CDS	ENST00000577770	ENST00000443584		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
intron-3CDS	ENST00000577770	ENST00000449996		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
intron-3CDS	ENST00000577770	ENST00000262406		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
intron-3UTR	ENST00000577770	ENST00000577186		TCGA	RV	BRCA	TCGA-E9-A22D-01A	BPTF	chr17	65850878	+	RGS9	chr17	63164318	+
5CDS-5UTR	ENST00000522532	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000522532	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000276689	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000518008	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-5UTR	ENST00000517367	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368827		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368825		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368824		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368823		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000368822		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000458431		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000440583		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000517830	ENST00000484421		TCGA	RV	BRCA	TCGA-AC-A6IX-06A	NDUFB9	chr8	125551528	+	TDRKH	chr1	151755525	-
5CDS-intron	ENST00000436909	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000436909	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000561678	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5CDS-intron	ENST00000357464	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000449833		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000409161		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000423696		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000338508		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000409530		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000449116		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000357171		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
3UTR-intron	ENST00000573002	ENST00000468619		TCGA	RV	BRCA	TCGA-EW-A1J5-01A	PAPD5	chr16	50250106	+	SHANK2	chr11	70858384	-
5UTR-3CDS	ENST00000520468	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000520468	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000520468	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-intron	ENST00000520468	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000297564	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000297564	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000297564	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-intron	ENST00000297564	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000520271	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000520271	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000520271	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-intron	ENST00000520271	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000517682	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000517682	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000517682	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-intron	ENST00000517682	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000524245	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000524245	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000524245	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-intron	ENST00000524245	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000522940	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000522940	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-3CDS	ENST00000522940	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
intron-intron	ENST00000522940	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000518171	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000518171	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000518171	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-intron	ENST00000518171	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000523016	ENST00000360863		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000523016	ENST00000523287		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-3CDS	ENST00000523016	ENST00000523437		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
5UTR-intron	ENST00000523016	ENST00000519421		TCGA	RV	BRCA	TCGA-EW-A1PD-01A	COX6C	chr8	100905867	-	RGS22	chr8	101020797	-
In-frame	ENST00000430069	ENST00000263966		TCGA	RV	BRCA	TCGA-A8-A07G-01A	TBL1XR1	chr3	176763917	-	USP13	chr3	179478900	+
5CDS-intron	ENST00000430069	ENST00000482333		TCGA	RV	BRCA	TCGA-A8-A07G-01A	TBL1XR1	chr3	176763917	-	USP13	chr3	179478900	+
5CDS-intron	ENST00000430069	ENST00000496897		TCGA	RV	BRCA	TCGA-A8-A07G-01A	TBL1XR1	chr3	176763917	-	USP13	chr3	179478900	+
Frame-shit	ENST00000457928	ENST00000263966		TCGA	RV	BRCA	TCGA-A8-A07G-01A	TBL1XR1	chr3	176763917	-	USP13	chr3	179478900	+
5CDS-intron	ENST00000457928	ENST00000482333		TCGA	RV	BRCA	TCGA-A8-A07G-01A	TBL1XR1	chr3	176763917	-	USP13	chr3	179478900	+
5CDS-intron	ENST00000457928	ENST00000496897		TCGA	RV	BRCA	TCGA-A8-A07G-01A	TBL1XR1	chr3	176763917	-	USP13	chr3	179478900	+
In-frame	ENST00000379328	ENST00000344293		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	GATA3	chr10	8111561	+	TAF3	chr10	8055694	+
In-frame	ENST00000346208	ENST00000344293		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	GATA3	chr10	8111561	+	TAF3	chr10	8055694	+
3UTR-3CDS	ENST00000461472	ENST00000344293		TCGA	RV	BRCA	TCGA-AR-A1AP-01A	GATA3	chr10	8111561	+	TAF3	chr10	8055694	+
In-frame	ENST00000225719	ENST00000225402		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748001	+	AATF	chr17	35376304	+
5CDS-intron	ENST00000225719	ENST00000590321		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748001	+	AATF	chr17	35376304	+
In-frame	ENST00000543464	ENST00000225402		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748001	+	AATF	chr17	35376304	+
5CDS-intron	ENST00000543464	ENST00000590321		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748001	+	AATF	chr17	35376304	+
intron-3CDS	ENST00000584051	ENST00000225402		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748001	+	AATF	chr17	35376304	+
intron-intron	ENST00000584051	ENST00000590321		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748001	+	AATF	chr17	35376304	+
In-frame	ENST00000261769	ENST00000305866		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000261769	ENST00000541136		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000261769	ENST00000544910		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000261769	ENST00000535481		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
5CDS-intron	ENST00000261769	ENST00000317751		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
5CDS-intron	ENST00000261769	ENST00000251739		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
5CDS-intron	ENST00000261769	ENST00000474412		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000422392	ENST00000305866		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000422392	ENST00000541136		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000422392	ENST00000544910		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000422392	ENST00000535481		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
5CDS-intron	ENST00000422392	ENST00000317751		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
5CDS-intron	ENST00000422392	ENST00000251739		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
5CDS-intron	ENST00000422392	ENST00000474412		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-3CDS	ENST00000562836	ENST00000305866		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-3CDS	ENST00000562836	ENST00000541136		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-3CDS	ENST00000562836	ENST00000544910		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-3CDS	ENST00000562836	ENST00000535481		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-intron	ENST00000562836	ENST00000317751		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-intron	ENST00000562836	ENST00000251739		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
3UTR-intron	ENST00000562836	ENST00000474412		TCGA	RV	BRCA	TCGA-AO-A12E-01A	CDH1	chr16	68857529	+	CCDC132	chr7	92952923	+
In-frame	ENST00000394579	ENST00000298249		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	PPIF	chr10	81107499	+	REEP3	chr10	65354538	+
In-frame	ENST00000394579	ENST00000373758		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	PPIF	chr10	81107499	+	REEP3	chr10	65354538	+
In-frame	ENST00000225174	ENST00000298249		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	PPIF	chr10	81107499	+	REEP3	chr10	65354538	+
In-frame	ENST00000225174	ENST00000373758		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	PPIF	chr10	81107499	+	REEP3	chr10	65354538	+
3UTR-3CDS	ENST00000492149	ENST00000298249		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	PPIF	chr10	81107499	+	REEP3	chr10	65354538	+
3UTR-3CDS	ENST00000492149	ENST00000373758		TCGA	RV	BRCA	TCGA-AN-A0AJ-01A	PPIF	chr10	81107499	+	REEP3	chr10	65354538	+
In-frame	ENST00000409613	ENST00000409514		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409613	ENST00000409098		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409613	ENST00000409394		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409613	ENST00000258416		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409613	ENST00000409495		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409613	ENST00000409167		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409613	ENST00000409322		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
5CDS-intron	ENST00000409613	ENST00000479834		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000409514		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000409098		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000409394		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000258416		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000409495		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000409167		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000264059	ENST00000409322		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
5CDS-intron	ENST00000264059	ENST00000479834		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000409514		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000409098		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000409394		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000258416		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000409495		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000409167		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000409708	ENST00000409322		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
5CDS-intron	ENST00000409708	ENST00000479834		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000409514		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000409098		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000409394		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000258416		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000409495		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000409167		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000410095	ENST00000409322		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
5CDS-intron	ENST00000410095	ENST00000479834		TCGA	RV	BRCA	TCGA-AO-A0JE-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233428957	+
In-frame	ENST00000253925	ENST00000308831		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
In-frame	ENST00000253925	ENST00000533360		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000253925	ENST00000532559		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
In-frame	ENST00000389547	ENST00000308831		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
In-frame	ENST00000389547	ENST00000533360		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000389547	ENST00000532559		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530548	ENST00000308831		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530548	ENST00000533360		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
intron-intron	ENST00000530548	ENST00000532559		TCGA	RV	BRCA	TCGA-EW-A1J3-01A	PPFIA1	chr11	70118542	+	RHOD	chr11	66833367	+
5UTR-3CDS	ENST00000229195	ENST00000229179		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-5UTR	ENST00000229195	ENST00000378905		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-5UTR	ENST00000229195	ENST00000539906		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-intron	ENST00000229195	ENST00000401003		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-3CDS	ENST00000418359	ENST00000229179		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-5UTR	ENST00000418359	ENST00000378905		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-5UTR	ENST00000418359	ENST00000539906		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-intron	ENST00000418359	ENST00000401003		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-3CDS	ENST00000548230	ENST00000229179		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-5UTR	ENST00000548230	ENST00000378905		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-5UTR	ENST00000548230	ENST00000539906		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-intron	ENST00000548230	ENST00000401003		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-3CDS	ENST00000551483	ENST00000229179		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-5UTR	ENST00000551483	ENST00000378905		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-5UTR	ENST00000551483	ENST00000539906		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
intron-intron	ENST00000551483	ENST00000401003		TCGA	RV	BRCA	TCGA-A8-A08F-01A	CNOT2	chr12	70637260	+	NUP107	chr12	69090599	+
5UTR-intron	ENST00000202028	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-5UTR	ENST00000202028	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-intron	ENST00000202028	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-intron	ENST00000373950	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-5UTR	ENST00000373950	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-intron	ENST00000373950	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-intron	ENST00000441639	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-5UTR	ENST00000441639	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
5UTR-intron	ENST00000441639	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000373946	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-5UTR	ENST00000373946	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000373946	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000338074	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-5UTR	ENST00000338074	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000338074	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000373941	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-5UTR	ENST00000373941	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000373941	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000479336	ENST00000237527		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-5UTR	ENST00000479336	ENST00000373614		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
intron-intron	ENST00000479336	ENST00000373611		TCGA	RV	BRCA	TCGA-A8-A079-01A	EPB41L1	chr20	34700402	+	GHRH	chr20	35885311	-
In-frame	ENST00000409613	ENST00000409514		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409613	ENST00000409098		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409613	ENST00000409394		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409613	ENST00000258416		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409613	ENST00000409495		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409613	ENST00000409167		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409613	ENST00000409322		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
5CDS-intron	ENST00000409613	ENST00000479834		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000409514		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000409098		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000409394		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000258416		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000409495		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000409167		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000264059	ENST00000409322		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
5CDS-intron	ENST00000264059	ENST00000479834		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000409514		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000409098		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000409394		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000258416		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000409495		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000409167		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000409708	ENST00000409322		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
5CDS-intron	ENST00000409708	ENST00000479834		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000409514		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000409098		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000409394		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000258416		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000409495		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000409167		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000410095	ENST00000409322		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
5CDS-intron	ENST00000410095	ENST00000479834		TCGA	RV	BRCA	TCGA-C8-A12Q-01A	EFHD1	chr2	233537153	+	EIF4E2	chr2	233431539	+
In-frame	ENST00000352035	ENST00000457167		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000352035	ENST00000426588		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000352035	ENST00000316603		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000352035	ENST00000589547		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000590151	ENST00000457167		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000590151	ENST00000426588		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000590151	ENST00000316603		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000590151	ENST00000589547		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000353196	ENST00000457167		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000353196	ENST00000426588		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000353196	ENST00000316603		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000353196	ENST00000589547		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000537919	ENST00000457167		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000537919	ENST00000426588		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
In-frame	ENST00000537919	ENST00000316603		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000537919	ENST00000589547		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000393896	ENST00000457167		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000393896	ENST00000426588		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
Frame-shit	ENST00000393896	ENST00000316603		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
5CDS-intron	ENST00000393896	ENST00000589547		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
intron-3CDS	ENST00000588779	ENST00000457167		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
intron-3CDS	ENST00000588779	ENST00000426588		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
intron-3CDS	ENST00000588779	ENST00000316603		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
intron-intron	ENST00000588779	ENST00000589547		TCGA	RV	BRCA	TCGA-LL-A6FR-01A	ACLY	chr17	40057949	-	DNAJC7	chr17	40129341	-
5CDS-3UTR	ENST00000271469	ENST00000371497		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000271469	ENST00000603338		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000271469	ENST00000329613		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000367926	ENST00000371497		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000367926	ENST00000603338		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000367926	ENST00000329613		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000476240	ENST00000371497		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000476240	ENST00000603338		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000476240	ENST00000329613		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000367924	ENST00000371497		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000367924	ENST00000603338		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000367924	ENST00000329613		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000367925	ENST00000371497		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000367925	ENST00000603338		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000367925	ENST00000329613		TCGA	RV	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	TSHZ2	chr20	52103683	+
5UTR-5UTR	ENST00000346329	ENST00000312293		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000346329	ENST00000393681		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000346329	ENST00000393679		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000346329	ENST00000393676		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000312293		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000393681		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000393679		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000393676		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000312293		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000393681		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000393679		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000393676		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000312293		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000393681		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000393679		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000393676		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000312293		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000393681		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000393679		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000393676		TCGA	RV	BRCA	TCGA-E9-A228-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
In-frame	ENST00000396024	ENST00000244061		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ANXA2	chr15	60643392	-	RNF114	chr20	48565785	+
In-frame	ENST00000451270	ENST00000244061		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ANXA2	chr15	60643392	-	RNF114	chr20	48565785	+
In-frame	ENST00000332680	ENST00000244061		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ANXA2	chr15	60643392	-	RNF114	chr20	48565785	+
In-frame	ENST00000421017	ENST00000244061		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ANXA2	chr15	60643392	-	RNF114	chr20	48565785	+
intron-3CDS	ENST00000557937	ENST00000244061		TCGA	RV	BRCA	TCGA-C8-A12P-01A	ANXA2	chr15	60643392	-	RNF114	chr20	48565785	+
5CDS-intron	ENST00000420696	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
5CDS-intron	ENST00000401534	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
5CDS-intron	ENST00000559240	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
5CDS-intron	ENST00000367897	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
5CDS-intron	ENST00000540236	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
intron-intron	ENST00000560641	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
intron-intron	ENST00000474046	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
intron-intron	ENST00000485769	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
intron-intron	ENST00000540246	ENST00000445977		TCGA	RV	BRCA	TCGA-A2-A1FW-01A	PBX1	chr1	164532548	+	COPG2	chr7	130148500	-
5CDS-5UTR	ENST00000346872	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346872	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346872	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000394189	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000394189	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000394189	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439167	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439167	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439167	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000535189	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000535189	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000535189	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377944	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377944	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377944	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377945	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377945	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377945	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377952	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377952	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377952	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377958	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377958	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377958	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346243	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346243	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346243	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000350532	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000350532	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000350532	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000351680	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000351680	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000351680	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000467757	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000467757	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000467757	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439016	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439016	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439016	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000583368	ENST00000394246		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000583368	ENST00000269582		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000583368	ENST00000581428		TCGA	RV	BRCA	TCGA-3C-AALI-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
In-frame	ENST00000440973	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000440973	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000440973	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
In-frame	ENST00000338799	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000338799	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000338799	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
In-frame	ENST00000456483	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000456483	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000456483	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
In-frame	ENST00000443427	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000443427	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000443427	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
In-frame	ENST00000206249	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000206249	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000206249	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000406599	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000406599	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000406599	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
In-frame	ENST00000427531	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000427531	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000427531	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000482101	ENST00000541428		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000482101	ENST00000379454		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000523897		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000522919		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000356457		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000518068		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000517903		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000445642		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000517847		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000522835		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000517856		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000389204		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000522603		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000379449		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-intron	ENST00000482101	ENST00000517661		TCGA	RV	BRCA	TCGA-A2-A3KD-01A	ESR1	chr6	152201906	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000417172	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-intron	ENST00000417172	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-3CDS	ENST00000361388	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-intron	ENST00000361388	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-3CDS	ENST00000422748	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-intron	ENST00000422748	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-3CDS	ENST00000361675	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-intron	ENST00000361675	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-3CDS	ENST00000361901	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
5UTR-intron	ENST00000361901	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-3CDS	ENST00000393118	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-intron	ENST00000393118	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-3CDS	ENST00000495522	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-intron	ENST00000495522	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-3CDS	ENST00000424922	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-intron	ENST00000424922	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-3CDS	ENST00000543443	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-intron	ENST00000543443	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-3CDS	ENST00000466704	ENST00000285928		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
intron-intron	ENST00000466704	ENST00000473068		TCGA	RV	BRCA	TCGA-E9-A244-01A	CALD1	chr7	134464500	+	LRGUK	chr7	133932308	+
In-frame	ENST00000584601	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000584601	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000406381	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000406381	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000541774	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000541774	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000445658	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000445658	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000540147	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000540147	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000584450	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000584450	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000269571	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000269571	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
intron-3CDS	ENST00000578199	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
intron-3UTR	ENST00000578199	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
intron-3CDS	ENST00000540042	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
intron-3UTR	ENST00000540042	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
intron-3CDS	ENST00000584888	ENST00000373189		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
intron-3UTR	ENST00000584888	ENST00000469204		TCGA	RV	BRCA	TCGA-AR-A254-01A	ERBB2	chr17	37883256	+	SLC29A3	chr10	73121711	+
Frame-shit	ENST00000225430	ENST00000305869		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356602	+	CCL11	chr17	32614115	+
Frame-shit	ENST00000579374	ENST00000305869		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356602	+	CCL11	chr17	32614115	+
5UTR-3CDS	ENST00000579260	ENST00000305869		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356602	+	CCL11	chr17	32614115	+
intron-3CDS	ENST00000582193	ENST00000305869		TCGA	RV	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356602	+	CCL11	chr17	32614115	+
intron-intron	ENST00000547990	ENST00000445067		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000547990	ENST00000369744		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000547990	ENST00000369748		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000547990	ENST00000466741		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000547990	ENST00000524472		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000547990	ENST00000529459		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000546809	ENST00000445067		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000546809	ENST00000369744		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000546809	ENST00000369748		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000546809	ENST00000466741		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000546809	ENST00000524472		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000546809	ENST00000529459		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000308796	ENST00000445067		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000308796	ENST00000369744		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000308796	ENST00000369748		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000308796	ENST00000466741		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000308796	ENST00000524472		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000308796	ENST00000529459		TCGA	RV	BRCA	TCGA-D8-A1JK-01A	MUCL1	chr12	55252171	+	CHI3L2	chr1	111772314	+
In-frame	ENST00000225972	ENST00000229179		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
In-frame	ENST00000225972	ENST00000378905		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
In-frame	ENST00000225972	ENST00000539906		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000225972	ENST00000401003		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000576448	ENST00000229179		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000576448	ENST00000378905		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000576448	ENST00000539906		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
intron-intron	ENST00000576448	ENST00000401003		TCGA	RV	BRCA	TCGA-A8-A0A7-01A	LRRC59	chr17	48469759	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000254066	ENST00000573500		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000576221		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000268896		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000576183		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000325214		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-3CDS	ENST00000394089	ENST00000573500		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000576221		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000268896		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000576183		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000325214		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-3CDS	ENST00000425707	ENST00000573500		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000576221		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000268896		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000576183		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000325214		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-3CDS	ENST00000394086	ENST00000573500		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000576221		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000268896		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000576183		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000325214		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-3CDS	ENST00000394081	ENST00000573500		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000576221		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000268896		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000576183		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000325214		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-3CDS	ENST00000420042	ENST00000573500		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000576221		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000268896		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000576183		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000325214		TCGA	RV	BRCA	TCGA-AN-A0FV-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-5UTR	ENST00000254066	ENST00000262293		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	RARA	chr17	38474700	+	PRR11	chr17	57247109	+
5UTR-5UTR	ENST00000394089	ENST00000262293		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	RARA	chr17	38474700	+	PRR11	chr17	57247109	+
5UTR-5UTR	ENST00000425707	ENST00000262293		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	RARA	chr17	38474700	+	PRR11	chr17	57247109	+
intron-5UTR	ENST00000394086	ENST00000262293		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	RARA	chr17	38474700	+	PRR11	chr17	57247109	+
intron-5UTR	ENST00000394081	ENST00000262293		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	RARA	chr17	38474700	+	PRR11	chr17	57247109	+
intron-5UTR	ENST00000420042	ENST00000262293		TCGA	RV	BRCA	TCGA-A2-A0YG-01A	RARA	chr17	38474700	+	PRR11	chr17	57247109	+
Frame-shit	ENST00000358791	ENST00000359926		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000358791	ENST00000371015		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000358791	ENST00000395639		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000358791	ENST00000541461		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000358791	ENST00000355648		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000358791	ENST00000395636		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000358791	ENST00000361300		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000262591	ENST00000359926		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000262591	ENST00000371015		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000262591	ENST00000395639		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000262591	ENST00000541461		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000262591	ENST00000355648		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000262591	ENST00000395636		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000262591	ENST00000361300		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000371608	ENST00000359926		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000371608	ENST00000371015		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000371608	ENST00000395639		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000371608	ENST00000541461		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000371608	ENST00000355648		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000371608	ENST00000395636		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000371608	ENST00000361300		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000609336	ENST00000359926		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000609336	ENST00000371015		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000609336	ENST00000395639		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000609336	ENST00000541461		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000609336	ENST00000355648		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000609336	ENST00000395636		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000609336	ENST00000361300		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-3CDS	ENST00000485049	ENST00000359926		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-3CDS	ENST00000485049	ENST00000371015		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-5UTR	ENST00000485049	ENST00000395639		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-5UTR	ENST00000485049	ENST00000541461		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-5UTR	ENST00000485049	ENST00000355648		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-5UTR	ENST00000485049	ENST00000395636		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
3UTR-5UTR	ENST00000485049	ENST00000361300		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BCAS4	chr20	49411710	+	PHACTR3	chr20	58318162	+
5CDS-intron	ENST00000395743	ENST00000535420		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BTC	chr4	75719472	-	ZBTB7B	chr1	154982734	+
5CDS-intron	ENST00000395743	ENST00000368426		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BTC	chr4	75719472	-	ZBTB7B	chr1	154982734	+
5CDS-intron	ENST00000395743	ENST00000487542		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BTC	chr4	75719472	-	ZBTB7B	chr1	154982734	+
5CDS-5UTR	ENST00000395743	ENST00000417934		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BTC	chr4	75719472	-	ZBTB7B	chr1	154982734	+
5CDS-intron	ENST00000395743	ENST00000292176		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	BTC	chr4	75719472	-	ZBTB7B	chr1	154982734	+
5CDS-intron	ENST00000247833	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000247833	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000247833	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000247833	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000247833	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378815	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378815	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378815	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378815	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000378815	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000325555	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000325555	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000325555	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000325555	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000325555	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000483530	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000483530	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000483530	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000483530	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000483530	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000550536	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000550536	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000550536	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000550536	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000550536	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000362025	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000362025	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000362025	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000362025	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000362025	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000551641	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000551641	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000551641	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000551641	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000551641	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000553099	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000553099	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000553099	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000553099	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000553099	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000550847	ENST00000355192		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000550847	ENST00000308259		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000550847	ENST00000540804		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000550847	ENST00000535664		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000550847	ENST00000538725		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	RAB3IP	chr12	70150443	+	MSRB3	chr12	65881784	+
Frame-shit	ENST00000296043	ENST00000368424		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	SHROOM3	chr4	77670243	+	DCST2	chr1	155005244	-
Frame-shit	ENST00000296043	ENST00000295536		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	SHROOM3	chr4	77670243	+	DCST2	chr1	155005244	-
intron-3CDS	ENST00000473602	ENST00000368424		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	SHROOM3	chr4	77670243	+	DCST2	chr1	155005244	-
intron-3CDS	ENST00000473602	ENST00000295536		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	SHROOM3	chr4	77670243	+	DCST2	chr1	155005244	-
5CDS-intron	ENST00000550746	ENST00000403729		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000550746	ENST00000482406		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000550746	ENST00000404191		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000550746	ENST00000346652		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000550746	ENST00000307333		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000550746	ENST00000295465		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000319106	ENST00000403729		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000319106	ENST00000482406		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000319106	ENST00000404191		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000319106	ENST00000346652		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000319106	ENST00000307333		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000319106	ENST00000295465		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000485960	ENST00000403729		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000485960	ENST00000482406		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000485960	ENST00000404191		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000485960	ENST00000346652		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000485960	ENST00000307333		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5CDS-intron	ENST00000485960	ENST00000295465		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5UTR-intron	ENST00000393309	ENST00000403729		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5UTR-intron	ENST00000393309	ENST00000482406		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5UTR-intron	ENST00000393309	ENST00000404191		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5UTR-intron	ENST00000393309	ENST00000346652		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5UTR-intron	ENST00000393309	ENST00000307333		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
5UTR-intron	ENST00000393309	ENST00000295465		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
intron-intron	ENST00000548679	ENST00000403729		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
intron-intron	ENST00000548679	ENST00000482406		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
intron-intron	ENST00000548679	ENST00000404191		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
intron-intron	ENST00000548679	ENST00000346652		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
intron-intron	ENST00000548679	ENST00000307333		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
intron-intron	ENST00000548679	ENST00000295465		TCGA	LD	BRCA	TCGA-3C-AAAU-01A	TBC1D15	chr12	72266783	+	ANTXR2	chr4	81042431	-
Frame-shit	ENST00000353139	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000353139	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
Frame-shit	ENST00000360679	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000360679	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
Frame-shit	ENST00000394406	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000394406	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
Frame-shit	ENST00000335166	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000335166	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
intron-3CDS	ENST00000416895	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
intron-intron	ENST00000416895	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
Frame-shit	ENST00000361253	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000361253	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
intron-3CDS	ENST00000588142	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
intron-intron	ENST00000588142	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
intron-3CDS	ENST00000589665	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
intron-intron	ENST00000589665	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	ACACA	chr17	35468466	-	PRKCA	chr17	64637473	+
5CDS-3UTR	ENST00000393547	ENST00000425901		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DBF4B	chr17	42828045	+	LRRC37A11P	chr17	37209118	+
intron-3UTR	ENST00000398338	ENST00000425901		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DBF4B	chr17	42828045	+	LRRC37A11P	chr17	37209118	+
5CDS-3UTR	ENST00000315005	ENST00000425901		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DBF4B	chr17	42828045	+	LRRC37A11P	chr17	37209118	+
intron-3UTR	ENST00000526915	ENST00000425901		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DBF4B	chr17	42828045	+	LRRC37A11P	chr17	37209118	+
intron-intron	ENST00000225792	ENST00000258955		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DDX5	chr17	62496113	-	RSAD1	chr17	48556584	+
intron-intron	ENST00000450599	ENST00000258955		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DDX5	chr17	62496113	-	RSAD1	chr17	48556584	+
intron-intron	ENST00000578804	ENST00000258955		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DDX5	chr17	62496113	-	RSAD1	chr17	48556584	+
intron-intron	ENST00000580026	ENST00000258955		TCGA	LD	BRCA	TCGA-3C-AALI-01A	DDX5	chr17	62496113	-	RSAD1	chr17	48556584	+
5CDS-5UTR	ENST00000356126	ENST00000582809		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-3UTR	ENST00000356126	ENST00000577616		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000356126	ENST00000326270		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000356126	ENST00000346027		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000356126	ENST00000343388		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000356126	ENST00000542523		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000357146	ENST00000582809		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-3UTR	ENST00000357146	ENST00000577616		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000357146	ENST00000326270		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000357146	ENST00000346027		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000357146	ENST00000343388		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-5UTR	ENST00000357146	ENST00000542523		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5UTR-5UTR	ENST00000581618	ENST00000582809		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5UTR-3UTR	ENST00000581618	ENST00000577616		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5UTR-5UTR	ENST00000581618	ENST00000326270		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5UTR-5UTR	ENST00000581618	ENST00000346027		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5UTR-5UTR	ENST00000581618	ENST00000343388		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5UTR-5UTR	ENST00000581618	ENST00000542523		TCGA	LD	BRCA	TCGA-3C-AALI-01A	PSMD12	chr17	65362528	-	TLK2	chr17	60558482	+
5CDS-intron	ENST00000336308	ENST00000299341		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000336308	ENST00000376352		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000336308	ENST00000405898		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000336308	ENST00000434978		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000336308	ENST00000398391		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
intron-intron	ENST00000578232	ENST00000299341		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
intron-intron	ENST00000578232	ENST00000376352		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
intron-intron	ENST00000578232	ENST00000405898		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
intron-intron	ENST00000578232	ENST00000434978		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
intron-intron	ENST00000578232	ENST00000398391		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000544210	ENST00000299341		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000544210	ENST00000376352		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000544210	ENST00000405898		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000544210	ENST00000434978		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000544210	ENST00000398391		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000394250	ENST00000299341		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000394250	ENST00000376352		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000394250	ENST00000405898		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000394250	ENST00000434978		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000394250	ENST00000398391		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000580611	ENST00000299341		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000580611	ENST00000376352		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000580611	ENST00000405898		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000580611	ENST00000434978		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000580611	ENST00000398391		TCGA	LD	BRCA	TCGA-3C-AALI-01A	STARD3	chr17	37818597	+	STXBP4	chr17	53150261	+
Frame-shit	ENST00000314616	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	SUPT6H	chr17	27015236	+	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000314616	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	SUPT6H	chr17	27015236	+	PRKCA	chr17	64492319	+
Frame-shit	ENST00000347486	ENST00000413366		TCGA	LD	BRCA	TCGA-3C-AALI-01A	SUPT6H	chr17	27015236	+	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000347486	ENST00000583361		TCGA	LD	BRCA	TCGA-3C-AALI-01A	SUPT6H	chr17	27015236	+	PRKCA	chr17	64492319	+
Frame-shit	ENST00000346141	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000346141	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000346141	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000346141	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000346141	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
Frame-shit	ENST00000325752	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000325752	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000325752	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000325752	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000325752	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
Frame-shit	ENST00000340993	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000340993	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000340993	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000340993	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000340993	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
Frame-shit	ENST00000394239	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000394239	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000394239	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000394239	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000394239	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
Frame-shit	ENST00000592426	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000592426	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000592426	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000592426	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000592426	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
Frame-shit	ENST00000376094	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000376094	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000376094	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000376094	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000376094	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
intron-3CDS	ENST00000539018	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000539018	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000539018	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000539018	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000539018	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000591611	ENST00000354329		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000529578		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000533112		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000531253		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000527372		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000346141	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000346141	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000325752	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000325752	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000340993	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000340993	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000394239	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000394239	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000592426	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000592426	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000376094	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000376094	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000539018	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000539018	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000408971		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000591611	ENST00000359450		TCGA	LD	BRCA	TCGA-3C-AALI-01A	TUBD1	chr17	57968192	-	TIAF1	chr17	27401932	-
5CDS-intron	ENST00000356208	ENST00000276570		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66968701	+
5CDS-3UTR	ENST00000356208	ENST00000519330		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66968701	+
intron-intron	ENST00000440234	ENST00000276570		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66968701	+
intron-3UTR	ENST00000440234	ENST00000519330		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66968701	+
5CDS-intron	ENST00000371219	ENST00000276570		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66968701	+
5CDS-3UTR	ENST00000371219	ENST00000519330		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	RBM38	chr20	55968389	+	DNAJC5B	chr8	66968701	+
Frame-shit	ENST00000444631	ENST00000257899		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000444631	ENST00000548925		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000444631	ENST00000549147		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000444631	ENST00000547076		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000444631	ENST00000551926		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000444631	ENST00000548556		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000336133	ENST00000257899		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000336133	ENST00000548925		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
In-frame	ENST00000336133	ENST00000549147		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000336133	ENST00000547076		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000336133	ENST00000551926		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000336133	ENST00000548556		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000552080	ENST00000257899		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000552080	ENST00000548925		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
In-frame	ENST00000552080	ENST00000549147		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000552080	ENST00000547076		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000552080	ENST00000551926		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000552080	ENST00000548556		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	SARNP	chr12	56182859	-	BLOC1S1	chr12	56112875	+
5UTR-3UTR	ENST00000521138	ENST00000578861		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5UTR-5UTR	ENST00000521138	ENST00000580219		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5UTR-intron	ENST00000521138	ENST00000452859		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5UTR-5UTR	ENST00000521138	ENST00000393405		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5UTR-5UTR	ENST00000521138	ENST00000439357		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5UTR-5UTR	ENST00000521138	ENST00000359238		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5UTR-5UTR	ENST00000521138	ENST00000582104		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-3UTR	ENST00000260116	ENST00000578861		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-5UTR	ENST00000260116	ENST00000580219		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-intron	ENST00000260116	ENST00000452859		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-5UTR	ENST00000260116	ENST00000393405		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-5UTR	ENST00000260116	ENST00000439357		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-5UTR	ENST00000260116	ENST00000359238		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-5UTR	ENST00000260116	ENST00000582104		TCGA	LD	BRCA	TCGA-3C-AALJ-01A	TTPA	chr8	63998377	-	SNX11	chr17	46189393	+
5CDS-5UTR	ENST00000336915	ENST00000246672		TCGA	LD	BRCA	TCGA-3C-AALK-01A	SKAP1	chr17	46474042	-	NR1D1	chr17	38256519	-
5CDS-5UTR	ENST00000584924	ENST00000246672		TCGA	LD	BRCA	TCGA-3C-AALK-01A	SKAP1	chr17	46474042	-	NR1D1	chr17	38256519	-
intron-3CDS	ENST00000338458	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000338458	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000338458	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-intron	ENST00000338458	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-3CDS	ENST00000496106	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000496106	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000496106	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-intron	ENST00000496106	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-3CDS	ENST00000498517	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000498517	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000498517	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-intron	ENST00000498517	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
Frame-shit	ENST00000296315	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
5CDS-5UTR	ENST00000296315	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
5CDS-5UTR	ENST00000296315	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
5CDS-intron	ENST00000296315	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-3CDS	ENST00000413728	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000413728	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000413728	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-intron	ENST00000413728	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-3CDS	ENST00000497267	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000497267	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-5UTR	ENST00000497267	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
intron-intron	ENST00000497267	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
Frame-shit	ENST00000495373	ENST00000231751		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
5CDS-5UTR	ENST00000495373	ENST00000426532		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
5CDS-5UTR	ENST00000495373	ENST00000417439		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
5CDS-intron	ENST00000495373	ENST00000493056		TCGA	LD	BRCA	TCGA-5L-AAT0-01A	ARHGEF3	chr3	56835731	-	LTF	chr3	46501309	-
Frame-shit	ENST00000356136	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
Frame-shit	ENST00000356136	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000356136	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
Frame-shit	ENST00000528420	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
Frame-shit	ENST00000528420	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000528420	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000533454	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000533454	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-5UTR	ENST00000533454	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000531818	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000531818	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-5UTR	ENST00000531818	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000532130	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000532130	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-5UTR	ENST00000532130	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000539288	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-3CDS	ENST00000539288	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5UTR-5UTR	ENST00000539288	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000525872	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000525872	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000525872	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000538870	ENST00000376217		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000538870	ENST00000315938		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000538870	ENST00000527489		TCGA	LD	BRCA	TCGA-5T-A9QA-01A	UVRAG	chr11	75694557	+	GDPD4	chr11	76998465	-
5CDS-3UTR	ENST00000325083	ENST00000517441		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000325083	ENST00000535084		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000307719		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000539092		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000541942		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000545197		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000518029		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000517492		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000520546		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000519253	ENST00000517441		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000519253	ENST00000535084		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000307719		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000539092		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000541942		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000545197		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000518029		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000517492		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000520546		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000524226	ENST00000517441		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000524226	ENST00000535084		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000307719		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000539092		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000541942		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000545197		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000518029		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000517492		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000520546		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-3UTR	ENST00000518537	ENST00000517441		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-3UTR	ENST00000518537	ENST00000535084		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000307719		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000539092		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000541942		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000545197		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000518029		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000517492		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000520546		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-3UTR	ENST00000518936	ENST00000517441		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-3UTR	ENST00000518936	ENST00000535084		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000307719		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000539092		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000541942		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000545197		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000518029		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000517492		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000520546		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000327578	ENST00000517441		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-3UTR	ENST00000327578	ENST00000535084		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000307719		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000539092		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000541942		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000545197		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000518029		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000517492		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000520546		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	NAT1	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000568943		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000414754		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000379906		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000561820		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000219833		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000566163		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000325083	ENST00000567238		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000568943		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000414754		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000379906		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000561820		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000219833		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000566163		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000519253	ENST00000567238		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000568943		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000414754		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000379906		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000561820		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000219833		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000566163		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000524226	ENST00000567238		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000568943		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000414754		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000379906		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000561820		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000219833		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000566163		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518537	ENST00000567238		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000568943		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000414754		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000379906		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000561820		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000219833		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000566163		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
intron-intron	ENST00000518936	ENST00000567238		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000568943		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000414754		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000379906		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000561820		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000219833		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000566163		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
5CDS-intron	ENST00000327578	ENST00000567238		TCGA	LD	BRCA	TCGA-A1-A0SD-01A	PCM1	chr8	17843596	+	SLC6A2	chr8	18028188	+
Frame-shit	ENST00000360971	ENST00000369002		TCGA	LD	BRCA	TCGA-A1-A0SG-01A	ENPP1	chr6	132207864	+	SEC63	chr6	108246136	-
5CDS-intron	ENST00000360971	ENST00000460009		TCGA	LD	BRCA	TCGA-A1-A0SG-01A	ENPP1	chr6	132207864	+	SEC63	chr6	108246136	-
Frame-shit	ENST00000066544	ENST00000360743		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000066544	ENST00000358039		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000066544	ENST00000544629		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000066544	ENST00000369669		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000066544	ENST00000490067		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000066544	ENST00000369668		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000066544	ENST00000369666		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000066544	ENST00000343210		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000066544	ENST00000538187		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-5UTR	ENST00000066544	ENST00000463235		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-5UTR	ENST00000066544	ENST00000543570		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000531206	ENST00000360743		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000531206	ENST00000358039		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000531206	ENST00000544629		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000531206	ENST00000369669		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000531206	ENST00000490067		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000531206	ENST00000369668		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000531206	ENST00000369666		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000531206	ENST00000343210		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000531206	ENST00000538187		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-5UTR	ENST00000531206	ENST00000463235		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-5UTR	ENST00000531206	ENST00000543570		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-3CDS	ENST00000446365	ENST00000360743		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-3CDS	ENST00000446365	ENST00000358039		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-3CDS	ENST00000446365	ENST00000544629		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-intron	ENST00000446365	ENST00000369669		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-intron	ENST00000446365	ENST00000490067		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-intron	ENST00000446365	ENST00000369668		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-intron	ENST00000446365	ENST00000369666		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-intron	ENST00000446365	ENST00000343210		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-intron	ENST00000446365	ENST00000538187		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-5UTR	ENST00000446365	ENST00000463235		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5UTR-5UTR	ENST00000446365	ENST00000543570		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000527547	ENST00000360743		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000527547	ENST00000358039		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
Frame-shit	ENST00000527547	ENST00000544629		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000527547	ENST00000369669		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000527547	ENST00000490067		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000527547	ENST00000369668		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000527547	ENST00000369666		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000527547	ENST00000343210		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-intron	ENST00000527547	ENST00000538187		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-5UTR	ENST00000527547	ENST00000463235		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
5CDS-5UTR	ENST00000527547	ENST00000543570		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-3CDS	ENST00000528748	ENST00000360743		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-3CDS	ENST00000528748	ENST00000358039		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-3CDS	ENST00000528748	ENST00000544629		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-intron	ENST00000528748	ENST00000369669		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-intron	ENST00000528748	ENST00000490067		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-intron	ENST00000528748	ENST00000369668		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-intron	ENST00000528748	ENST00000369666		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-intron	ENST00000528748	ENST00000343210		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-intron	ENST00000528748	ENST00000538187		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-5UTR	ENST00000528748	ENST00000463235		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
intron-5UTR	ENST00000528748	ENST00000543570		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CDC27	chr17	45266512	-	ST7L	chr1	113143470	-
In-frame	ENST00000370206	ENST00000370205		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
5CDS-intron	ENST00000370206	ENST00000495856		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
In-frame	ENST00000538964	ENST00000370205		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
5CDS-intron	ENST00000538964	ENST00000495856		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
In-frame	ENST00000394202	ENST00000370205		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
5CDS-intron	ENST00000394202	ENST00000495856		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
intron-3CDS	ENST00000545882	ENST00000370205		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
intron-intron	ENST00000545882	ENST00000495856		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
intron-3CDS	ENST00000487539	ENST00000370205		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
intron-intron	ENST00000487539	ENST00000495856		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	CNN3	chr1	95392394	-	ALG14	chr1	95492816	-
Frame-shit	ENST00000225964	ENST00000353801		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	COL1A1	chr17	48275093	-	HSP90AB1	chr6	44217758	+
Frame-shit	ENST00000225964	ENST00000371646		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	COL1A1	chr17	48275093	-	HSP90AB1	chr6	44217758	+
Frame-shit	ENST00000225964	ENST00000371554		TCGA	LD	BRCA	TCGA-A1-A0SH-01A	COL1A1	chr17	48275093	-	HSP90AB1	chr6	44217758	+
5CDS-intron	ENST00000369250	ENST00000368693		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369250	ENST00000368695		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-5UTR	ENST00000369250	ENST00000449042		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369250	ENST00000368689		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369250	ENST00000477963		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369248	ENST00000368693		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369248	ENST00000368695		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-5UTR	ENST00000369248	ENST00000449042		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369248	ENST00000368689		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
5CDS-intron	ENST00000369248	ENST00000477963		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
intron-intron	ENST00000369246	ENST00000368693		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
intron-intron	ENST00000369246	ENST00000368695		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
intron-5UTR	ENST00000369246	ENST00000449042		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
intron-intron	ENST00000369246	ENST00000368689		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
intron-intron	ENST00000369246	ENST00000477963		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	FAM160B1	chr10	116606126	+	FANK1	chr10	127661942	+
Frame-shit	ENST00000534064	ENST00000373184		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000534064	ENST00000373187		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000534064	ENST00000356100		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000534064	ENST00000373190		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000534064	ENST00000373193		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000534064	ENST00000373198		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000534064	ENST00000373201		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
5CDS-5UTR	ENST00000534064	ENST00000485499		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000373184		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000373187		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000356100		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000373190		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000373193		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000373198		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000535943	ENST00000373201		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-5UTR	ENST00000535943	ENST00000485499		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000373184		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000373187		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000356100		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000373190		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000373193		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000373198		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000525931	ENST00000373201		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-5UTR	ENST00000525931	ENST00000485499		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000373184		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000373187		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000356100		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000373190		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000373193		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000373198		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
Frame-shit	ENST00000529807	ENST00000373201		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
5CDS-5UTR	ENST00000529807	ENST00000485499		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000373184		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000373187		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000356100		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000373190		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000373193		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000373198		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000527522	ENST00000373201		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-5UTR	ENST00000527522	ENST00000485499		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	INTS4	chr11	77666988	-	PTPRT	chr20	41514572	-
intron-3CDS	ENST00000492698	ENST00000552032		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
intron-3CDS	ENST00000492698	ENST00000547771		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
intron-intron	ENST00000492698	ENST00000299350		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
intron-intron	ENST00000492698	ENST00000535034		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000252999	ENST00000552032		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000252999	ENST00000547771		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000252999	ENST00000299350		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000252999	ENST00000535034		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000370692	ENST00000552032		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000370692	ENST00000547771		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000370692	ENST00000299350		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000370692	ENST00000535034		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000370677	ENST00000552032		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000370677	ENST00000547771		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000370677	ENST00000299350		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000370677	ENST00000535034		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	LAMA5	chr20	60937456	-	MYRFL	chr12	70272808	+
Frame-shit	ENST00000424789	ENST00000373233		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000424789	ENST00000309279		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000424789	ENST00000373222		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000424789	ENST00000480022		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
Frame-shit	ENST00000389520	ENST00000373233		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000389520	ENST00000309279		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000389520	ENST00000373222		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000389520	ENST00000480022		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	TANC2	chr17	61086987	+	CHD6	chr20	40086068	-
In-frame	ENST00000356136	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
In-frame	ENST00000356136	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-intron	ENST00000356136	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-intron	ENST00000356136	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-intron	ENST00000356136	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
In-frame	ENST00000528420	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
In-frame	ENST00000528420	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-intron	ENST00000528420	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-intron	ENST00000528420	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-intron	ENST00000528420	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000533454	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000533454	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000533454	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000533454	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000533454	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000531818	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000531818	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000531818	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000531818	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000531818	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000532130	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000532130	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000532130	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000532130	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000532130	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000539288	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000539288	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000539288	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000539288	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000539288	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
3UTR-3CDS	ENST00000525872	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
3UTR-3CDS	ENST00000525872	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
3UTR-intron	ENST00000525872	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
3UTR-intron	ENST00000525872	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
3UTR-intron	ENST00000525872	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000538870	ENST00000534064		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-3CDS	ENST00000538870	ENST00000535943		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000538870	ENST00000525931		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000538870	ENST00000529807		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
intron-intron	ENST00000538870	ENST00000527522		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	UVRAG	chr11	75623083	+	INTS4	chr11	77618856	-
5CDS-5UTR	ENST00000322563	ENST00000393330		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000322563	ENST00000247829		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000322563	ENST00000546561		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000322563	ENST00000552128		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000322563	ENST00000552786		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000532150	ENST00000393330		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000532150	ENST00000247829		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000532150	ENST00000546561		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
intron-intron	ENST00000532150	ENST00000552128		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000532150	ENST00000552786		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	WNT11	chr11	75917369	-	TSPAN8	chr12	71551567	-
Frame-shit	ENST00000378743	ENST00000360469		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
Frame-shit	ENST00000378743	ENST00000543233		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
intron-3CDS	ENST00000548100	ENST00000360469		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
intron-3CDS	ENST00000548100	ENST00000543233		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
intron-3CDS	ENST00000552037	ENST00000360469		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
intron-3CDS	ENST00000552037	ENST00000543233		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
intron-3CDS	ENST00000549407	ENST00000360469		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
intron-3CDS	ENST00000549407	ENST00000543233		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFC3H1	chr12	72013095	-	CDH4	chr20	60427810	+
In-frame	ENST00000316059	ENST00000535633		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
In-frame	ENST00000316059	ENST00000424319		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
In-frame	ENST00000316059	ENST00000343727		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
In-frame	ENST00000316059	ENST00000534731		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000525196		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000263317		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000532825		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000527956		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000542487		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000527626		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000528341		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000413594		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000375979		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000531342		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-intron	ENST00000316059	ENST00000393282		TCGA	LD	BRCA	TCGA-A1-A0SJ-01A	ZFP91	chr11	58352357	+	NOX4	chr11	89088211	-
5CDS-5UTR	ENST00000251582	ENST00000315475		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	ADAMTS2	chr5	178770768	-	ZNF354C	chr5	178489016	+
5CDS-5UTR	ENST00000274609	ENST00000315475		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	ADAMTS2	chr5	178770768	-	ZNF354C	chr5	178489016	+
intron-3CDS	ENST00000397594	ENST00000176195		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	HRAS	chr11	532631	-	SCT	chr11	626530	-
intron-3CDS	ENST00000397596	ENST00000176195		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	HRAS	chr11	532631	-	SCT	chr11	626530	-
intron-3CDS	ENST00000451590	ENST00000176195		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	HRAS	chr11	532631	-	SCT	chr11	626530	-
intron-3CDS	ENST00000417302	ENST00000176195		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	HRAS	chr11	532631	-	SCT	chr11	626530	-
3UTR-3CDS	ENST00000311189	ENST00000176195		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	HRAS	chr11	532631	-	SCT	chr11	626530	-
intron-3CDS	ENST00000468682	ENST00000176195		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	HRAS	chr11	532631	-	SCT	chr11	626530	-
5CDS-5UTR	ENST00000354662	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000354662	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000354662	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000354662	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000354662	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000441439	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000441439	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000441439	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000441439	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000441439	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000447609	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000447609	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000447609	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000447609	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000447609	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000320122	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000320122	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000320122	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000320122	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000320122	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000261169	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000261169	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000261169	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000261169	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000261169	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000540848	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000540848	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000540848	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000540848	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000540848	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000535535	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000535535	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000535535	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000535535	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000535535	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000537304	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000537304	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000537304	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000537304	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000537304	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000541295	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000541295	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000541295	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000541295	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000541295	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000534946	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000534946	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000534946	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000534946	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000534946	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-5UTR	ENST00000540445	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-5UTR	ENST00000540445	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-5UTR	ENST00000540445	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-intron	ENST00000540445	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-intron	ENST00000540445	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000541846	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000541846	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000541846	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000541846	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-intron	ENST00000541846	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-5UTR	ENST00000537568	ENST00000543523		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-5UTR	ENST00000537568	ENST00000281172		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-5UTR	ENST00000537568	ENST00000543612		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-intron	ENST00000537568	ENST00000540613		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
intron-intron	ENST00000537568	ENST00000542903		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	LMO3	chr12	16753589	-	EPS8	chr12	15835906	-
5CDS-5UTR	ENST00000382172	ENST00000382145		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
5CDS-5UTR	ENST00000382172	ENST00000556521		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
5CDS-5UTR	ENST00000382172	ENST00000382137		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
5CDS-5UTR	ENST00000382172	ENST00000382140		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
5CDS-5UTR	ENST00000382172	ENST00000382057		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
intron-5UTR	ENST00000469167	ENST00000382145		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
intron-5UTR	ENST00000469167	ENST00000556521		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
intron-5UTR	ENST00000469167	ENST00000382137		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
intron-5UTR	ENST00000469167	ENST00000382140		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
intron-5UTR	ENST00000469167	ENST00000382057		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	MIPEP	chr13	24453407	-	C1QTNF9B	chr13	24471145	-
intron-intron	ENST00000377122	ENST00000399298		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000377122	ENST00000399293		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000377122	ENST00000507507		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
5CDS-intron	ENST00000417816	ENST00000399298		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
5CDS-intron	ENST00000417816	ENST00000399293		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
5CDS-intron	ENST00000417816	ENST00000507507		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
5CDS-intron	ENST00000377159	ENST00000399298		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
5CDS-intron	ENST00000377159	ENST00000399293		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
5CDS-intron	ENST00000377159	ENST00000507507		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000377119	ENST00000399298		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000377119	ENST00000399293		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000377119	ENST00000507507		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000464278	ENST00000399298		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000464278	ENST00000399293		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-intron	ENST00000464278	ENST00000507507		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	NEBL	chr10	21309046	-	TMEM26	chr10	63175881	-
intron-5UTR	ENST00000322357	ENST00000316757		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	ZBTB7A	chr19	4065428	-	APBA3	chr19	3760299	-
5UTR-5UTR	ENST00000601588	ENST00000316757		TCGA	LD	BRCA	TCGA-A1-A0SK-01A	ZBTB7A	chr19	4065428	-	APBA3	chr19	3760299	-
In-frame	ENST00000349699	ENST00000264639		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	DDX52	chr17	35980918	-	PSMD3	chr17	38145992	+
In-frame	ENST00000349699	ENST00000541736		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	DDX52	chr17	35980918	-	PSMD3	chr17	38145992	+
In-frame	ENST00000394367	ENST00000264639		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	DDX52	chr17	35980918	-	PSMD3	chr17	38145992	+
In-frame	ENST00000394367	ENST00000541736		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	DDX52	chr17	35980918	-	PSMD3	chr17	38145992	+
Frame-shit	ENST00000281038	ENST00000315392		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000281038	ENST00000493200		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-5UTR	ENST00000281038	ENST00000539608		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000281038	ENST00000444911		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000281038	ENST00000394316		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
Frame-shit	ENST00000528850	ENST00000315392		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000528850	ENST00000493200		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-5UTR	ENST00000528850	ENST00000539608		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000528850	ENST00000444911		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000528850	ENST00000394316		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	NARS2	chr11	78239888	-	PLXDC1	chr17	37296085	-
Frame-shit	ENST00000254066	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000254066	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000394089	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000394089	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
Frame-shit	ENST00000425707	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000425707	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
intron-3CDS	ENST00000394086	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
intron-5UTR	ENST00000394086	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
intron-3CDS	ENST00000394081	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
intron-5UTR	ENST00000394081	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
intron-3CDS	ENST00000420042	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
intron-5UTR	ENST00000420042	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	RARA	chr17	38487648	+	NARS2	chr11	78282489	-
In-frame	ENST00000336308	ENST00000356136		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000336308	ENST00000528420		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000336308	ENST00000533454		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000336308	ENST00000531818		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000336308	ENST00000532130		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000336308	ENST00000539288		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000336308	ENST00000525872		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000336308	ENST00000538870		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-3CDS	ENST00000578232	ENST00000356136		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-3CDS	ENST00000578232	ENST00000528420		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-intron	ENST00000578232	ENST00000533454		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-intron	ENST00000578232	ENST00000531818		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-intron	ENST00000578232	ENST00000532130		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-intron	ENST00000578232	ENST00000539288		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-intron	ENST00000578232	ENST00000525872		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
3UTR-intron	ENST00000578232	ENST00000538870		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000544210	ENST00000356136		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000544210	ENST00000528420		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000544210	ENST00000533454		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000544210	ENST00000531818		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000544210	ENST00000532130		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000544210	ENST00000539288		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000544210	ENST00000525872		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000544210	ENST00000538870		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000394250	ENST00000356136		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000394250	ENST00000528420		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000394250	ENST00000533454		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000394250	ENST00000531818		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000394250	ENST00000532130		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000394250	ENST00000539288		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000394250	ENST00000525872		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000394250	ENST00000538870		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000580611	ENST00000356136		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000580611	ENST00000528420		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000580611	ENST00000533454		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000580611	ENST00000531818		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000580611	ENST00000532130		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000580611	ENST00000539288		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000580611	ENST00000525872		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000580611	ENST00000538870		TCGA	LD	BRCA	TCGA-A1-A0SM-01A	STARD3	chr17	37810003	+	UVRAG	chr11	75599873	+
In-frame	ENST00000083182	ENST00000184956		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	APPBP2	chr17	58529241	-	HEATR6	chr17	58134764	-
In-frame	ENST00000083182	ENST00000585976		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	APPBP2	chr17	58529241	-	HEATR6	chr17	58134764	-
5CDS-intron	ENST00000083182	ENST00000585712		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	APPBP2	chr17	58529241	-	HEATR6	chr17	58134764	-
intron-3CDS	ENST00000592995	ENST00000184956		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	APPBP2	chr17	58529241	-	HEATR6	chr17	58134764	-
intron-3CDS	ENST00000592995	ENST00000585976		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	APPBP2	chr17	58529241	-	HEATR6	chr17	58134764	-
intron-intron	ENST00000592995	ENST00000585712		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	APPBP2	chr17	58529241	-	HEATR6	chr17	58134764	-
In-frame	ENST00000225726	ENST00000351388		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000225726	ENST00000458650		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000225726	ENST00000323322		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000225726	ENST00000342364		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000403162	ENST00000351388		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000403162	ENST00000458650		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000403162	ENST00000323322		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000403162	ENST00000342364		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000582252	ENST00000351388		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000582252	ENST00000458650		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000582252	ENST00000323322		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
In-frame	ENST00000582252	ENST00000342364		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	CCDC47	chr17	61838274	-	GH1	chr17	61995866	-
intron-intron	ENST00000371564	ENST00000394126		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000371564	ENST00000356271		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000371564	ENST00000394128		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000371564	ENST00000394127		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000371564	ENST00000501516		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000371564	ENST00000479829		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000396009	ENST00000394126		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000396009	ENST00000356271		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000396009	ENST00000394128		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000396009	ENST00000394127		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000396009	ENST00000501516		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000396009	ENST00000479829		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609943	ENST00000394126		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609943	ENST00000356271		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609943	ENST00000394128		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609943	ENST00000394127		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609943	ENST00000501516		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609943	ENST00000479829		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000610033	ENST00000394126		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000610033	ENST00000356271		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000610033	ENST00000394128		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000610033	ENST00000394127		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000610033	ENST00000501516		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000610033	ENST00000479829		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000414705	ENST00000394126		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000414705	ENST00000356271		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000414705	ENST00000394128		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000414705	ENST00000394127		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000414705	ENST00000501516		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000414705	ENST00000479829		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609507	ENST00000394126		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609507	ENST00000356271		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609507	ENST00000394128		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609507	ENST00000394127		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609507	ENST00000501516		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
intron-intron	ENST00000609507	ENST00000479829		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	NFATC2	chr20	50007621	-	MED24	chr17	38210948	-
In-frame	ENST00000264639	ENST00000346672		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
In-frame	ENST00000264639	ENST00000360962		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000264639	ENST00000527634		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000264639	ENST00000540737		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000264639	ENST00000532565		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000264639	ENST00000525449		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
5CDS-3UTR	ENST00000264639	ENST00000527368		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000541736	ENST00000346672		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000541736	ENST00000360962		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000541736	ENST00000527634		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000541736	ENST00000540737		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000541736	ENST00000532565		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000541736	ENST00000525449		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-3UTR	ENST00000541736	ENST00000527368		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	PSMD3	chr17	38137443	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000514361	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
intron-3CDS	ENST00000514361	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000503028	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000503028	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000310092	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000310092	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000396053	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000396053	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000408993	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000408993	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000578778	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000578778	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
In-frame	ENST00000483858	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
In-frame	ENST00000483858	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000398692	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000398692	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000506523	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000506523	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000530235	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000530235	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
In-frame	ENST00000532968	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
In-frame	ENST00000532968	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000409406	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
Frame-shit	ENST00000409406	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
intron-3CDS	ENST00000515838	ENST00000579925		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
intron-3CDS	ENST00000515838	ENST00000323456		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RBM4	chr11	66407594	+	MTMR4	chr17	56573691	-
In-frame	ENST00000308831	ENST00000371419		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RHOD	chr11	66834318	+	PFDN4	chr20	52830890	+
5CDS-3UTR	ENST00000308831	ENST00000487129		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RHOD	chr11	66834318	+	PFDN4	chr20	52830890	+
In-frame	ENST00000533360	ENST00000371419		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RHOD	chr11	66834318	+	PFDN4	chr20	52830890	+
5CDS-3UTR	ENST00000533360	ENST00000487129		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RHOD	chr11	66834318	+	PFDN4	chr20	52830890	+
intron-3CDS	ENST00000532559	ENST00000371419		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RHOD	chr11	66834318	+	PFDN4	chr20	52830890	+
intron-3UTR	ENST00000532559	ENST00000487129		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	RHOD	chr11	66834318	+	PFDN4	chr20	52830890	+
5UTR-5UTR	ENST00000582809	ENST00000392671		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5UTR-5UTR	ENST00000582809	ENST00000283936		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5UTR-intron	ENST00000582809	ENST00000589377		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5UTR-intron	ENST00000582809	ENST00000586462		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5UTR-intron	ENST00000582809	ENST00000392670		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5UTR-intron	ENST00000582809	ENST00000585558		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
3UTR-5UTR	ENST00000577616	ENST00000392671		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
3UTR-5UTR	ENST00000577616	ENST00000283936		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
3UTR-intron	ENST00000577616	ENST00000589377		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
3UTR-intron	ENST00000577616	ENST00000586462		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
3UTR-intron	ENST00000577616	ENST00000392670		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
3UTR-intron	ENST00000577616	ENST00000585558		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000326270	ENST00000392671		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000326270	ENST00000283936		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000326270	ENST00000589377		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000326270	ENST00000586462		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000326270	ENST00000392670		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000326270	ENST00000585558		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000346027	ENST00000392671		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000346027	ENST00000283936		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000346027	ENST00000589377		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000346027	ENST00000586462		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000346027	ENST00000392670		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000346027	ENST00000585558		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000343388	ENST00000392671		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000343388	ENST00000283936		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000343388	ENST00000589377		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000343388	ENST00000586462		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000343388	ENST00000392670		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000343388	ENST00000585558		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000542523	ENST00000392671		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-5UTR	ENST00000542523	ENST00000283936		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000542523	ENST00000589377		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000542523	ENST00000586462		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000542523	ENST00000392670		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000542523	ENST00000585558		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	TLK2	chr17	60558567	+	KCNJ16	chr17	68096799	+
5CDS-intron	ENST00000262291	ENST00000329235		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-3UTR	ENST00000262291	ENST00000380291		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-5UTR	ENST00000262291	ENST00000479184		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-5UTR	ENST00000262291	ENST00000545766		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-intron	ENST00000262291	ENST00000421527		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-intron	ENST00000537567	ENST00000329235		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-3UTR	ENST00000537567	ENST00000380291		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-5UTR	ENST00000537567	ENST00000479184		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-5UTR	ENST00000537567	ENST00000545766		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-intron	ENST00000537567	ENST00000421527		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5UTR-intron	ENST00000539763	ENST00000329235		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5UTR-3UTR	ENST00000539763	ENST00000380291		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5UTR-5UTR	ENST00000539763	ENST00000479184		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5UTR-5UTR	ENST00000539763	ENST00000545766		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5UTR-intron	ENST00000539763	ENST00000421527		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-intron	ENST00000536180	ENST00000329235		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-3UTR	ENST00000536180	ENST00000380291		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-5UTR	ENST00000536180	ENST00000479184		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-5UTR	ENST00000536180	ENST00000545766		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-intron	ENST00000536180	ENST00000421527		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-intron	ENST00000545362	ENST00000329235		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-3UTR	ENST00000545362	ENST00000380291		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-5UTR	ENST00000545362	ENST00000479184		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-5UTR	ENST00000545362	ENST00000545766		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
5CDS-intron	ENST00000545362	ENST00000421527		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-intron	ENST00000588617	ENST00000329235		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-3UTR	ENST00000588617	ENST00000380291		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-5UTR	ENST00000588617	ENST00000479184		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-5UTR	ENST00000588617	ENST00000545766		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
intron-intron	ENST00000588617	ENST00000421527		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57816308	+	AP1S2	chrX	15849691	-
In-frame	ENST00000262291	ENST00000398645		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000262291	ENST00000529006		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000262291	ENST00000526258		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000262291	ENST00000308783		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000262291	ENST00000530342		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000537567	ENST00000398645		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000537567	ENST00000529006		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000537567	ENST00000526258		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000537567	ENST00000308783		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000537567	ENST00000530342		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000539763	ENST00000398645		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000539763	ENST00000529006		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000539763	ENST00000526258		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000539763	ENST00000308783		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000539763	ENST00000530342		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000536180	ENST00000398645		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000536180	ENST00000529006		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000536180	ENST00000526258		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000536180	ENST00000308783		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000536180	ENST00000530342		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000545362	ENST00000398645		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
In-frame	ENST00000545362	ENST00000529006		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000545362	ENST00000526258		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000545362	ENST00000308783		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000545362	ENST00000530342		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000588617	ENST00000398645		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000588617	ENST00000529006		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000588617	ENST00000526258		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000588617	ENST00000308783		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000588617	ENST00000530342		TCGA	LD	BRCA	TCGA-A1-A0SN-01A	VMP1	chr17	57851246	+	KDM2A	chr11	66947550	+
5CDS-5UTR	ENST00000265846	ENST00000396113		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
5CDS-5UTR	ENST00000265846	ENST00000286687		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
5CDS-5UTR	ENST00000265846	ENST00000396111		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
5CDS-intron	ENST00000265846	ENST00000521840		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
5CDS-intron	ENST00000265846	ENST00000542894		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
5CDS-intron	ENST00000265846	ENST00000396124		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000449296	ENST00000396113		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000449296	ENST00000286687		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000449296	ENST00000396111		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000449296	ENST00000521840		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000449296	ENST00000542894		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000449296	ENST00000396124		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000539900	ENST00000396113		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000539900	ENST00000286687		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000539900	ENST00000396111		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000539900	ENST00000521840		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000539900	ENST00000542894		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000539900	ENST00000396124		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000463358	ENST00000396113		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000463358	ENST00000286687		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000463358	ENST00000396111		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000463358	ENST00000521840		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000463358	ENST00000542894		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000463358	ENST00000396124		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ADAP1	chr7	994032	-	NDUFAF6	chr8	96044223	+
5CDS-5UTR	ENST00000329623	ENST00000398505		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000329623	ENST00000310826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000329623	ENST00000398499		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-intron	ENST00000329623	ENST00000398511		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000329623	ENST00000465968		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000380486	ENST00000398505		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000380486	ENST00000310826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000380486	ENST00000398499		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-intron	ENST00000380486	ENST00000398511		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000380486	ENST00000465968		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
intron-5UTR	ENST00000478372	ENST00000398505		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
intron-5UTR	ENST00000478372	ENST00000310826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
intron-5UTR	ENST00000478372	ENST00000398499		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
intron-intron	ENST00000478372	ENST00000398511		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
intron-5UTR	ENST00000478372	ENST00000465968		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	C2CD2	chr21	43332441	-	ZBTB21	chr21	43423070	-
5CDS-5UTR	ENST00000332797	ENST00000430629		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	CCDC28A	chr6	139097415	+	WASF2	chr1	27755443	-
5CDS-5UTR	ENST00000332797	ENST00000536657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	CCDC28A	chr6	139097415	+	WASF2	chr1	27755443	-
5CDS-5UTR	ENST00000361246	ENST00000256339		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	CDC42BPB	chr14	103523336	-	UNC79	chr14	93934017	+
5CDS-5UTR	ENST00000361246	ENST00000555664		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	CDC42BPB	chr14	103523336	-	UNC79	chr14	93934017	+
5CDS-5UTR	ENST00000361246	ENST00000553484		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	CDC42BPB	chr14	103523336	-	UNC79	chr14	93934017	+
5CDS-5UTR	ENST00000361246	ENST00000393151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	CDC42BPB	chr14	103523336	-	UNC79	chr14	93934017	+
intron-intron	ENST00000376177	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000376177	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000396172	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000417556	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000458640	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000462421	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415382	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453105	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000449074	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552820	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000463430	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000438578	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000415689	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456476	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412106	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547039	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550435	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453488	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000453138	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000552288	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000441425	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000456666	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546633	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000483957	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430703	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000416863	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000413678	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000414440	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000547489	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000551031	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000468089	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400293	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400296	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000400295	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000383508	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548340	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548331	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000495391	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000446341	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000548614	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000448296	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000412330	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000445218	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000546637	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000489325	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000450987	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000431360	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000430784	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000550217	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000470514	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000376151		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000303892		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000483251		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000483170		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000441959		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000443657		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000460751		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000454370		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000421596		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000468203		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000454889		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000447174		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000552135		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000471441		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000383503		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000452453		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000482649		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000449748		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000434217		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000459844		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000444088		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000448779		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
intron-intron	ENST00000549374	ENST00000479342		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	DDX39B	chr6	31498698	-	ATP6V1G2	chr6	31513543	-
Frame-shit	ENST00000257868	ENST00000257899		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	GDF11	chr12	56137545	+	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000257868	ENST00000548925		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	GDF11	chr12	56137545	+	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000257868	ENST00000549147		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	GDF11	chr12	56137545	+	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000257868	ENST00000547076		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	GDF11	chr12	56137545	+	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000257868	ENST00000551926		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	GDF11	chr12	56137545	+	BLOC1S1	chr12	56112875	+
5CDS-5UTR	ENST00000257868	ENST00000548556		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	GDF11	chr12	56137545	+	BLOC1S1	chr12	56112875	+
Frame-shit	ENST00000519065	ENST00000356698		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000519065	ENST00000368317		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000519065	ENST00000485757		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000398283	ENST00000356698		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000398283	ENST00000368317		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000398283	ENST00000485757		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000519108	ENST00000356698		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000519108	ENST00000368317		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000519108	ENST00000485757		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000368632	ENST00000356698		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000368632	ENST00000368317		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000368632	ENST00000485757		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HDAC2	chr6	114292021	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000307845	ENST00000238112		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HPCAL1	chr2	10537046	+	CPSF3	chr2	9607836	+
5UTR-3CDS	ENST00000307845	ENST00000460593		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HPCAL1	chr2	10537046	+	CPSF3	chr2	9607836	+
5UTR-3UTR	ENST00000307845	ENST00000489403		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HPCAL1	chr2	10537046	+	CPSF3	chr2	9607836	+
5UTR-3CDS	ENST00000381765	ENST00000238112		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HPCAL1	chr2	10537046	+	CPSF3	chr2	9607836	+
5UTR-3CDS	ENST00000381765	ENST00000460593		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HPCAL1	chr2	10537046	+	CPSF3	chr2	9607836	+
5UTR-3UTR	ENST00000381765	ENST00000489403		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	HPCAL1	chr2	10537046	+	CPSF3	chr2	9607836	+
5UTR-5UTR	ENST00000399353	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399353	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399353	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399353	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000381318	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381318	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381318	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381318	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000381291	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381291	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381291	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381291	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000381285	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381285	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381285	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000381285	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000399367	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399367	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399367	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399367	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000399352	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399352	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399352	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399352	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000399355	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399355	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399355	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399355	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000399349	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399349	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399349	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000399349	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000399338	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399338	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399338	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399338	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000379960	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000379960	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000379960	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000379960	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000437442	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000437442	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000437442	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000437442	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000399326	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399326	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399326	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399326	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000488166	ENST00000264229		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000488166	ENST00000541073		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000488166	ENST00000504228		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-intron	ENST00000488166	ENST00000505410		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	ITSN1	chr21	35015019	+	KIAA1211	chr4	57045450	+
intron-3CDS	ENST00000257765	ENST00000407008		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
intron-intron	ENST00000257765	ENST00000583517		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
intron-intron	ENST00000257765	ENST00000582037		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
In-frame	ENST00000370384	ENST00000407008		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
5CDS-intron	ENST00000370384	ENST00000583517		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
5CDS-intron	ENST00000370384	ENST00000582037		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
5UTR-3CDS	ENST00000484801	ENST00000407008		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
5UTR-intron	ENST00000484801	ENST00000583517		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
5UTR-intron	ENST00000484801	ENST00000582037		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	KHDC1	chr6	74001721	-	NLK	chr17	26449629	+
intron-3CDS	ENST00000454872	ENST00000401722		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-3CDS	ENST00000454872	ENST00000228318		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-3CDS	ENST00000454872	ENST00000188376		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-3CDS	ENST00000454872	ENST00000551917		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-3CDS	ENST00000454872	ENST00000552981		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-intron	ENST00000454872	ENST00000551265		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-intron	ENST00000454872	ENST00000547534		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-intron	ENST00000454872	ENST00000549338		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
intron-intron	ENST00000454872	ENST00000548847		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-3CDS	ENST00000473253	ENST00000401722		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-3CDS	ENST00000473253	ENST00000228318		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-3CDS	ENST00000473253	ENST00000188376		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-3CDS	ENST00000473253	ENST00000551917		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-3CDS	ENST00000473253	ENST00000552981		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-intron	ENST00000473253	ENST00000551265		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-intron	ENST00000473253	ENST00000547534		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-intron	ENST00000473253	ENST00000549338		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
3UTR-intron	ENST00000473253	ENST00000548847		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NAALADL2	chr3	174581880	+	SLC25A3	chr12	98991634	+
Frame-shit	ENST00000369301	ENST00000355044		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NHLRC2	chr10	115618439	+	ATRNL1	chr10	117486758	+
Frame-shit	ENST00000369301	ENST00000423111		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NHLRC2	chr10	115618439	+	ATRNL1	chr10	117486758	+
Frame-shit	ENST00000369301	ENST00000303745		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NHLRC2	chr10	115618439	+	ATRNL1	chr10	117486758	+
5CDS-intron	ENST00000369301	ENST00000529665		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NHLRC2	chr10	115618439	+	ATRNL1	chr10	117486758	+
5CDS-intron	ENST00000369301	ENST00000527407		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	NHLRC2	chr10	115618439	+	ATRNL1	chr10	117486758	+
5UTR-3CDS	ENST00000355360	ENST00000525144		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000355360	ENST00000529097		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000355360	ENST00000525704		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000355360	ENST00000533026		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000355360	ENST00000416561		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000329291	ENST00000525144		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000329291	ENST00000529097		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000329291	ENST00000525704		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000329291	ENST00000533026		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000329291	ENST00000416561		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000539153	ENST00000525144		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000539153	ENST00000529097		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000539153	ENST00000525704		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000539153	ENST00000533026		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000539153	ENST00000416561		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000462488	ENST00000525144		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000462488	ENST00000529097		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000462488	ENST00000525704		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
intron-intron	ENST00000462488	ENST00000533026		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
intron-intron	ENST00000462488	ENST00000416561		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	PGBD2	chr1	249200541	+	KIRREL3	chr11	126343361	-
5UTR-5UTR	ENST00000341901	ENST00000573319		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	SBK1	chr16	28304621	+	BCAR4	chr16	11915612	-
5UTR-3CDS	ENST00000283943	ENST00000409979		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000283943	ENST00000310078		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000283943	ENST00000409315		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000283943	ENST00000373671		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000283943	ENST00000409171		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-intron	ENST00000283943	ENST00000486932		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389045	ENST00000409979		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389045	ENST00000310078		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389045	ENST00000409315		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389045	ENST00000373671		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389045	ENST00000409171		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-intron	ENST00000389045	ENST00000486932		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389044	ENST00000409979		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389044	ENST00000310078		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389044	ENST00000409315		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389044	ENST00000373671		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000389044	ENST00000409171		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-intron	ENST00000389044	ENST00000486932		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000543084	ENST00000409979		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000543084	ENST00000310078		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000543084	ENST00000409315		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000543084	ENST00000373671		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000543084	ENST00000409171		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-intron	ENST00000543084	ENST00000486932		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000409677	ENST00000409979		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000409677	ENST00000310078		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000409677	ENST00000409315		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000409677	ENST00000373671		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-3CDS	ENST00000409677	ENST00000409171		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
5UTR-intron	ENST00000409677	ENST00000486932		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	TRIP12	chr2	230786596	-	AGFG1	chr2	228401617	+
Frame-shit	ENST00000292211	ENST00000361490		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
Frame-shit	ENST00000292211	ENST00000325103		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5CDS-5UTR	ENST00000292211	ENST00000467246		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5CDS-intron	ENST00000292211	ENST00000338546		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5UTR-3CDS	ENST00000497453	ENST00000361490		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5UTR-3CDS	ENST00000497453	ENST00000325103		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5UTR-5UTR	ENST00000497453	ENST00000467246		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5UTR-intron	ENST00000497453	ENST00000338546		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	UBE2Q1	chr1	154530703	-	HPS1	chr10	100187021	-
5CDS-5UTR	ENST00000437048	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000437048	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000437048	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
intron-5UTR	ENST00000574029	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
intron-intron	ENST00000574029	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
intron-intron	ENST00000574029	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
intron-5UTR	ENST00000576149	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
intron-intron	ENST00000576149	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
intron-intron	ENST00000576149	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5UTR-5UTR	ENST00000446250	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5UTR-intron	ENST00000446250	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5UTR-intron	ENST00000446250	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-5UTR	ENST00000291074	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000291074	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000291074	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-5UTR	ENST00000571805	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000571805	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000571805	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-5UTR	ENST00000401468	ENST00000312719		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000401468	ENST00000411826		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-intron	ENST00000401468	ENST00000441954		TCGA	LD	BRCA	TCGA-A1-A0SO-01A	VPS53	chr17	600658	-	HS3ST5	chr6	114489626	-
5CDS-3UTR	ENST00000281708	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000281708	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000281708	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-3UTR	ENST00000603548	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000603548	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000603548	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
intron-3UTR	ENST00000604872	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
intron-intron	ENST00000604872	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
intron-intron	ENST00000604872	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-3UTR	ENST00000296555	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000296555	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000296555	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-3UTR	ENST00000263981	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000263981	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000263981	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-3UTR	ENST00000393956	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000393956	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000393956	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-3UTR	ENST00000603841	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000603841	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5CDS-intron	ENST00000603841	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
intron-3UTR	ENST00000604095	ENST00000515137		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
intron-intron	ENST00000604095	ENST00000265498		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
intron-intron	ENST00000604095	ENST00000506797		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	FBXW7	chr4	153268082	-	MGST2	chr4	140661366	+
5UTR-5UTR	ENST00000409843	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409843	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409843	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000409843	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409830	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409830	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409830	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000409830	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000410051	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000410051	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000410051	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000410051	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
3UTR-5UTR	ENST00000479019	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
3UTR-5UTR	ENST00000479019	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
3UTR-5UTR	ENST00000479019	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
3UTR-3UTR	ENST00000479019	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409805	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409805	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409805	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000409805	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000359135	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000359135	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000359135	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000359135	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409580	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409580	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409580	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000409580	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409637	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409637	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409637	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000409637	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409609	ENST00000409798		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409609	ENST00000295119		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-5UTR	ENST00000409609	ENST00000541912		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
5UTR-3UTR	ENST00000409609	ENST00000497330		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	GULP1	chr2	189248616	+	NUP35	chr2	183993015	+
3UTR-3CDS	ENST00000571790	ENST00000400427		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
3UTR-3CDS	ENST00000571790	ENST00000400424		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
3UTR-3CDS	ENST00000571790	ENST00000408910		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
3UTR-3CDS	ENST00000571790	ENST00000408989		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
3UTR-intron	ENST00000571790	ENST00000400423		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000283027	ENST00000400427		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000283027	ENST00000400424		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000283027	ENST00000408910		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000283027	ENST00000408989		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
5CDS-intron	ENST00000283027	ENST00000400423		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000433392	ENST00000400427		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000433392	ENST00000400424		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000433392	ENST00000408910		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
In-frame	ENST00000433392	ENST00000408989		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
5CDS-intron	ENST00000433392	ENST00000400423		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	NUBP1	chr16	10851884	+	UMODL1	chr21	43508404	+
Frame-shit	ENST00000371953	ENST00000535572		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
Frame-shit	ENST00000371953	ENST00000537687		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
Frame-shit	ENST00000371953	ENST00000315939		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
Frame-shit	ENST00000371953	ENST00000447667		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
Frame-shit	ENST00000371953	ENST00000530271		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
5CDS-intron	ENST00000371953	ENST00000540360		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
5CDS-intron	ENST00000371953	ENST00000340908		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
5CDS-intron	ENST00000371953	ENST00000574564		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-3CDS	ENST00000472832	ENST00000535572		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-3CDS	ENST00000472832	ENST00000537687		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-3CDS	ENST00000472832	ENST00000315939		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-3CDS	ENST00000472832	ENST00000447667		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-3CDS	ENST00000472832	ENST00000530271		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-intron	ENST00000472832	ENST00000540360		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-intron	ENST00000472832	ENST00000340908		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
intron-intron	ENST00000472832	ENST00000574564		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	PTEN	chr10	89685314	+	WNK1	chr12	922808	+
Frame-shit	ENST00000216185	ENST00000353903		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
Frame-shit	ENST00000216185	ENST00000294288		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
5UTR-3CDS	ENST00000416967	ENST00000353903		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
5UTR-3CDS	ENST00000416967	ENST00000294288		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
5UTR-3CDS	ENST00000487725	ENST00000353903		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
5UTR-3CDS	ENST00000487725	ENST00000294288		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
In-frame	ENST00000403313	ENST00000353903		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
In-frame	ENST00000403313	ENST00000294288		TCGA	LD	BRCA	TCGA-A1-A0SP-01A	TXN2	chr22	36876622	-	CABP2	chr11	67289453	-
5CDS-5UTR	ENST00000308964	ENST00000598095		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000308964	ENST00000426897		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000308964	ENST00000323906		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000308964	ENST00000535669		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000308964	ENST00000596426		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000586790	ENST00000598095		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000586790	ENST00000426897		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000586790	ENST00000323906		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000586790	ENST00000535669		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000586790	ENST00000596426		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591578	ENST00000598095		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591578	ENST00000426897		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591578	ENST00000323906		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591578	ENST00000535669		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000591578	ENST00000596426		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000588740	ENST00000598095		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000588740	ENST00000426897		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000588740	ENST00000323906		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000588740	ENST00000535669		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000588740	ENST00000596426		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591241	ENST00000598095		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591241	ENST00000426897		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591241	ENST00000323906		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000591241	ENST00000535669		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000591241	ENST00000596426		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	CCDC106	chr19	56160950	+	CD37	chr19	49838971	+
Frame-shit	ENST00000534064	ENST00000339082		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000534064	ENST00000601723		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000534064	ENST00000340093		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000534064	ENST00000221264		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000535943	ENST00000339082		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000535943	ENST00000601723		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000535943	ENST00000340093		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000535943	ENST00000221264		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000525931	ENST00000339082		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000525931	ENST00000601723		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000525931	ENST00000340093		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000525931	ENST00000221264		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000529807	ENST00000339082		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000529807	ENST00000601723		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000529807	ENST00000340093		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000529807	ENST00000221264		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000527522	ENST00000339082		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000527522	ENST00000601723		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000527522	ENST00000340093		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
intron-3CDS	ENST00000527522	ENST00000221264		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	INTS4	chr11	77612467	-	PLAUR	chr19	44160792	-
In-frame	ENST00000294304	ENST00000198801		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	LRP5	chr11	68193655	+	MOGAT2	chr11	75431037	+
5CDS-5UTR	ENST00000294304	ENST00000526712		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	LRP5	chr11	68193655	+	MOGAT2	chr11	75431037	+
intron-3CDS	ENST00000529481	ENST00000198801		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	LRP5	chr11	68193655	+	MOGAT2	chr11	75431037	+
intron-5UTR	ENST00000529481	ENST00000526712		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	LRP5	chr11	68193655	+	MOGAT2	chr11	75431037	+
Frame-shit	ENST00000262891	ENST00000377950		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
5CDS-5UTR	ENST00000262891	ENST00000414615		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
5CDS-5UTR	ENST00000262891	ENST00000594013		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
5CDS-intron	ENST00000262891	ENST00000599397		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
Frame-shit	ENST00000300843	ENST00000377950		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
5CDS-5UTR	ENST00000300843	ENST00000414615		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
5CDS-5UTR	ENST00000300843	ENST00000594013		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
5CDS-intron	ENST00000300843	ENST00000599397		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	MARK4	chr19	45797710	+	LYPD5	chr19	44303986	-
In-frame	ENST00000339082	ENST00000532481		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000527134		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000304716		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000526415		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000531855		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000393427		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000525409		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000533193		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000339082	ENST00000525034		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
In-frame	ENST00000601723	ENST00000532481		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000527134		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000304716		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000526415		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000531855		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000393427		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000525409		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000533193		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000601723	ENST00000525034		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
In-frame	ENST00000340093	ENST00000532481		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000527134		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000304716		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000526415		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000531855		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000393427		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000525409		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000533193		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000340093	ENST00000525034		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
In-frame	ENST00000221264	ENST00000532481		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000527134		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000304716		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000526415		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000531855		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000393427		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000525409		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000533193		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000221264	ENST00000525034		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PLAUR	chr19	44174218	-	AAMDC	chr11	77629107	+
5UTR-3CDS	ENST00000393799	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000393799	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000393799	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000393799	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
3UTR-3CDS	ENST00000530427	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
3UTR-5UTR	ENST00000530427	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
3UTR-5UTR	ENST00000530427	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
3UTR-3UTR	ENST00000530427	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000393800	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000393800	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000393800	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000393800	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000534534	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000534534	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000534534	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000534534	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000524845	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000524845	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000524845	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000524845	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000265637	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000265637	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000265637	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000265637	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000524904	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000524904	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000524904	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000524904	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000393801	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000393801	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000393801	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000393801	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000265636	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000265636	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000265636	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000265636	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3CDS	ENST00000529710	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000529710	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-5UTR	ENST00000529710	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
5UTR-3UTR	ENST00000529710	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
intron-3CDS	ENST00000527403	ENST00000263681		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
intron-5UTR	ENST00000527403	ENST00000527458		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
intron-5UTR	ENST00000527403	ENST00000532497		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
intron-3UTR	ENST00000527403	ENST00000532784		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	PPP6R3	chr11	68228295	+	POLD3	chr11	74305106	+
In-frame	ENST00000301244	ENST00000356341		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000301244	ENST00000530617		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000301244	ENST00000278568		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000301244	ENST00000528203		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
5CDS-intron	ENST00000301244	ENST00000525542		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
intron-3CDS	ENST00000587090	ENST00000356341		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
intron-3CDS	ENST00000587090	ENST00000530617		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
intron-3CDS	ENST00000587090	ENST00000278568		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
intron-3CDS	ENST00000587090	ENST00000528203		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
intron-intron	ENST00000587090	ENST00000525542		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000454580	ENST00000356341		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000454580	ENST00000530617		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000454580	ENST00000278568		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
In-frame	ENST00000454580	ENST00000528203		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
5CDS-intron	ENST00000454580	ENST00000525542		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	SPINT2	chr19	38755638	+	PAK1	chr11	77085410	-
intron-3CDS	ENST00000278550	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	TENM4	chr11	78673188	-	NARS2	chr11	78239982	-
intron-5UTR	ENST00000278550	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	TENM4	chr11	78673188	-	NARS2	chr11	78239982	-
intron-3CDS	ENST00000533038	ENST00000281038		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	TENM4	chr11	78673188	-	NARS2	chr11	78239982	-
intron-5UTR	ENST00000533038	ENST00000528850		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	TENM4	chr11	78673188	-	NARS2	chr11	78239982	-
Frame-shit	ENST00000512439	ENST00000336077		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF154	chr19	58216221	-	KIR2DL1	chr19	55284785	+
Frame-shit	ENST00000512439	ENST00000291633		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF154	chr19	58216221	-	KIR2DL1	chr19	55284785	+
In-frame	ENST00000426889	ENST00000336077		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF154	chr19	58216221	-	KIR2DL1	chr19	55284785	+
In-frame	ENST00000426889	ENST00000291633		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF154	chr19	58216221	-	KIR2DL1	chr19	55284785	+
Frame-shit	ENST00000391956	ENST00000405636		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000391956	ENST00000252487		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000391956	ENST00000592434		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000391956	ENST00000426677		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000221327	ENST00000405636		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000221327	ENST00000252487		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000221327	ENST00000592434		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000221327	ENST00000426677		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
In-frame	ENST00000592529	ENST00000405636		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000592529	ENST00000252487		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000592529	ENST00000592434		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000592529	ENST00000426677		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000586637	ENST00000405636		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000586637	ENST00000252487		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000586637	ENST00000592434		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000586637	ENST00000426677		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000587047	ENST00000405636		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000587047	ENST00000252487		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000587047	ENST00000592434		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000587047	ENST00000426677		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5UTR-3CDS	ENST00000585514	ENST00000405636		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5UTR-3CDS	ENST00000585514	ENST00000252487		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5UTR-3UTR	ENST00000585514	ENST00000592434		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
5UTR-3UTR	ENST00000585514	ENST00000426677		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF180	chr19	45001336	-	TOMM40	chr19	45406287	+
Frame-shit	ENST00000317398	ENST00000246794		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
5CDS-intron	ENST00000317398	ENST00000596700		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
5UTR-3CDS	ENST00000335820	ENST00000246794		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
5UTR-intron	ENST00000335820	ENST00000596700		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
Frame-shit	ENST00000596939	ENST00000246794		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
5CDS-intron	ENST00000596939	ENST00000596700		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
5UTR-3CDS	ENST00000594803	ENST00000246794		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
5UTR-intron	ENST00000594803	ENST00000596700		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF671	chr19	58238759	-	PRRG2	chr19	50091754	+
intron-5UTR	ENST00000597652	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597652	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-intron	ENST00000597652	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000596604	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-intron	ENST00000596604	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597342	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-intron	ENST00000597342	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000597832	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-intron	ENST00000597832	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000595295	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-intron	ENST00000595295	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000600634	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-intron	ENST00000600634	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-5UTR	ENST00000435989	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
5CDS-intron	ENST00000435989	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000599680		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000309877		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000600911		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000596822		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000601291		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000377139		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000597198		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000593922		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000600022		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000599223		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000596765		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000599144		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000598808		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-5UTR	ENST00000597807	ENST00000377135		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
intron-intron	ENST00000597807	ENST00000442265		TCGA	LD	BRCA	TCGA-A1-A0SQ-01A	ZNF814	chr19	58388284	-	IRF3	chr19	50163090	-
In-frame	ENST00000306796	ENST00000391857		TCGA	LD	BRCA	TCGA-A2-A04P-01A	DUS1L	chr17	80016657	-	RPL13A	chr19	49994297	+
5CDS-3UTR	ENST00000306796	ENST00000477613		TCGA	LD	BRCA	TCGA-A2-A04P-01A	DUS1L	chr17	80016657	-	RPL13A	chr19	49994297	+
In-frame	ENST00000354321	ENST00000391857		TCGA	LD	BRCA	TCGA-A2-A04P-01A	DUS1L	chr17	80016657	-	RPL13A	chr19	49994297	+
5CDS-3UTR	ENST00000354321	ENST00000477613		TCGA	LD	BRCA	TCGA-A2-A04P-01A	DUS1L	chr17	80016657	-	RPL13A	chr19	49994297	+
Frame-shit	ENST00000233057	ENST00000234170		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EIF2AK2	chr2	37349649	-	CEBPZ	chr2	37429046	-
Frame-shit	ENST00000395127	ENST00000234170		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EIF2AK2	chr2	37349649	-	CEBPZ	chr2	37429046	-
In-frame	ENST00000405334	ENST00000234170		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EIF2AK2	chr2	37349649	-	CEBPZ	chr2	37429046	-
In-frame	ENST00000373871	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373871	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373871	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-3UTR	ENST00000373871	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000436342	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000436342	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000436342	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-3UTR	ENST00000436342	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373864	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373864	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373864	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-3UTR	ENST00000373864	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000540618	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000540618	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000540618	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-3UTR	ENST00000540618	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000545175	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000545175	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000545175	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-3UTR	ENST00000545175	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373863	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373863	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
In-frame	ENST00000373863	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-3UTR	ENST00000373863	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
intron-3CDS	ENST00000471498	ENST00000585603		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
intron-3CDS	ENST00000471498	ENST00000221770		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
intron-3CDS	ENST00000471498	ENST00000392279		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
intron-3UTR	ENST00000471498	ENST00000591824		TCGA	LD	BRCA	TCGA-A2-A04P-01A	EYA3	chr1	28315046	-	POP4	chr19	30104778	+
5CDS-intron	ENST00000256079	ENST00000566620		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000256079	ENST00000268613		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-3UTR	ENST00000256079	ENST00000565636		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-3UTR	ENST00000256079	ENST00000431540		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000256079	ENST00000428848		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000256079	ENST00000567445		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000256079	ENST00000446376		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000256079	ENST00000569454		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000544829	ENST00000566620		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000544829	ENST00000268613		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-3UTR	ENST00000544829	ENST00000565636		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-3UTR	ENST00000544829	ENST00000431540		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000544829	ENST00000428848		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000544829	ENST00000567445		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000544829	ENST00000446376		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
5CDS-intron	ENST00000544829	ENST00000569454		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-intron	ENST00000538338	ENST00000566620		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-intron	ENST00000538338	ENST00000268613		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-3UTR	ENST00000538338	ENST00000565636		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-3UTR	ENST00000538338	ENST00000431540		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-intron	ENST00000538338	ENST00000428848		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-intron	ENST00000538338	ENST00000567445		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-intron	ENST00000538338	ENST00000446376		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
intron-intron	ENST00000538338	ENST00000569454		TCGA	LD	BRCA	TCGA-A2-A04P-01A	IPO8	chr12	30809618	-	CDH13	chr16	83214475	+
Frame-shit	ENST00000306984	ENST00000297071		TCGA	LD	BRCA	TCGA-A2-A04P-01A	MPLKIP	chr7	40173828	-	TRA2A	chr7	23556147	-
5CDS-5UTR	ENST00000306984	ENST00000392502		TCGA	LD	BRCA	TCGA-A2-A04P-01A	MPLKIP	chr7	40173828	-	TRA2A	chr7	23556147	-
5CDS-5UTR	ENST00000306984	ENST00000538367		TCGA	LD	BRCA	TCGA-A2-A04P-01A	MPLKIP	chr7	40173828	-	TRA2A	chr7	23556147	-
5CDS-5UTR	ENST00000306984	ENST00000474586		TCGA	LD	BRCA	TCGA-A2-A04P-01A	MPLKIP	chr7	40173828	-	TRA2A	chr7	23556147	-
In-frame	ENST00000401827	ENST00000353317		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
In-frame	ENST00000401827	ENST00000315962		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
In-frame	ENST00000401827	ENST00000276573		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
5CDS-intron	ENST00000401827	ENST00000350034		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
In-frame	ENST00000396642	ENST00000353317		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
In-frame	ENST00000396642	ENST00000315962		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
In-frame	ENST00000396642	ENST00000276573		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
5CDS-intron	ENST00000396642	ENST00000350034		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-3CDS	ENST00000379419	ENST00000353317		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-3CDS	ENST00000379419	ENST00000315962		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-3CDS	ENST00000379419	ENST00000276573		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-intron	ENST00000379419	ENST00000350034		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-3CDS	ENST00000518667	ENST00000353317		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-3CDS	ENST00000518667	ENST00000315962		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-3CDS	ENST00000518667	ENST00000276573		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
intron-intron	ENST00000518667	ENST00000350034		TCGA	LD	BRCA	TCGA-A2-A04P-01A	PDE7A	chr8	66753606	-	TRIM55	chr8	67061880	+
In-frame	ENST00000392325	ENST00000571995		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000392325	ENST00000571880		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392325	ENST00000269347		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392325	ENST00000538809		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000571835	ENST00000571995		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000571835	ENST00000571880		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000571835	ENST00000269347		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000571835	ENST00000538809		TCGA	LD	BRCA	TCGA-A2-A04P-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000562435	ENST00000447540		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000562435	ENST00000566029		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000562435	ENST00000564845		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000562435	ENST00000398510		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-3UTR	ENST00000562435	ENST00000564582		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000303155	ENST00000447540		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000303155	ENST00000566029		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000303155	ENST00000564845		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-intron	ENST00000303155	ENST00000398510		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
5CDS-3UTR	ENST00000303155	ENST00000564582		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	NETO2	chr16	47156568	-	CHD9	chr16	53155212	+
Frame-shit	ENST00000389467	ENST00000396324		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-3UTR	ENST00000389467	ENST00000452625		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-3UTR	ENST00000389467	ENST00000576790		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-3UTR	ENST00000389467	ENST00000300036		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-5UTR	ENST00000389467	ENST00000573908		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
Frame-shit	ENST00000446231	ENST00000396324		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-3UTR	ENST00000446231	ENST00000452625		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-3UTR	ENST00000446231	ENST00000576790		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-3UTR	ENST00000446231	ENST00000300036		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-5UTR	ENST00000446231	ENST00000573908		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3CDS	ENST00000565224	ENST00000396324		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3UTR	ENST00000565224	ENST00000452625		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3UTR	ENST00000565224	ENST00000576790		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3UTR	ENST00000565224	ENST00000300036		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-5UTR	ENST00000565224	ENST00000573908		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3CDS	ENST00000567737	ENST00000396324		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3UTR	ENST00000567737	ENST00000452625		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3UTR	ENST00000567737	ENST00000576790		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-3UTR	ENST00000567737	ENST00000300036		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
intron-5UTR	ENST00000567737	ENST00000573908		TCGA	LD	BRCA	TCGA-A2-A04Q-01A	SMG1	chr16	18844265	-	MYH11	chr16	15797983	-
5CDS-5UTR	ENST00000398519	ENST00000269389		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000398519	ENST00000580437		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000314028	ENST00000269389		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000314028	ENST00000580437		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000392334	ENST00000269389		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000392334	ENST00000580437		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000578904	ENST00000269389		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000578904	ENST00000580437		TCGA	LD	BRCA	TCGA-A2-A04T-01A	CSNK1D	chr17	80206751	-	SECTM1	chr17	80285168	-
Frame-shit	ENST00000325722	ENST00000542507		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000325722	ENST00000373812		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000325722	ENST00000541996		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000325722	ENST00000478283		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000373266	ENST00000542507		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000373266	ENST00000373812		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000373266	ENST00000541996		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
intron-3UTR	ENST00000373266	ENST00000478283		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000485551	ENST00000542507		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000485551	ENST00000373812		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000485551	ENST00000541996		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
5UTR-3UTR	ENST00000485551	ENST00000478283		TCGA	LD	BRCA	TCGA-A2-A04T-01A	KIAA0319L	chr1	35936464	-	YTHDF2	chr1	29095441	+
In-frame	ENST00000571589	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000571589	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000571589	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000571589	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
In-frame	ENST00000574045	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000574045	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000574045	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000574045	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
In-frame	ENST00000318282	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000318282	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000318282	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000318282	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
Frame-shit	ENST00000572567	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000572567	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000572567	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000572567	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
In-frame	ENST00000341243	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000341243	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000341243	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000341243	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
intron-3CDS	ENST00000575537	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
intron-intron	ENST00000575537	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
intron-intron	ENST00000575537	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
intron-intron	ENST00000575537	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
In-frame	ENST00000573051	ENST00000566228		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000573051	ENST00000323433		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000573051	ENST00000306030		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
5CDS-intron	ENST00000573051	ENST00000568359		TCGA	LD	BRCA	TCGA-A2-A04T-01A	MKL2	chr16	14334341	+	SNX29	chr16	12121177	+
Frame-shit	ENST00000300061	ENST00000356083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	SCNN1G	chr16	23208748	+	COL27A1	chr9	116924995	+
5CDS-intron	ENST00000300061	ENST00000477421		TCGA	LD	BRCA	TCGA-A2-A04T-01A	SCNN1G	chr16	23208748	+	COL27A1	chr9	116924995	+
Frame-shit	ENST00000438423	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000438423	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000438423	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000438423	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000438423	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000438423	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
Frame-shit	ENST00000267811	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000267811	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000267811	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000267811	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000267811	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000267811	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
Frame-shit	ENST00000452095	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000452095	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000452095	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000452095	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000452095	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000452095	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
Frame-shit	ENST00000333725	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000333725	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000333725	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000333725	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000333725	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000333725	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
Frame-shit	ENST00000557843	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000557843	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000557843	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-5UTR	ENST00000557843	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000557843	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
5CDS-intron	ENST00000557843	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-3CDS	ENST00000560764	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000560764	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000560764	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000560764	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000560764	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000560764	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-3CDS	ENST00000543579	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000543579	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000543579	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000543579	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000543579	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000543579	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-3CDS	ENST00000537840	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000537840	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000537840	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000537840	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000537840	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000537840	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-3CDS	ENST00000343827	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000343827	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000343827	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000343827	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000343827	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000343827	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-3CDS	ENST00000559710	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000559710	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000559710	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000559710	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000559710	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000559710	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-3CDS	ENST00000559703	ENST00000352903		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000559703	ENST00000537232		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000559703	ENST00000561221		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-5UTR	ENST00000559703	ENST00000558083		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000559703	ENST00000559142		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
intron-intron	ENST00000559703	ENST00000560582		TCGA	LD	BRCA	TCGA-A2-A04T-01A	TCF12	chr15	57213296	+	TEX9	chr15	56657777	+
Frame-shit	ENST00000367590	ENST00000367588		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
Frame-shit	ENST00000367590	ENST00000367587		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
5CDS-intron	ENST00000367590	ENST00000461346		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
Frame-shit	ENST00000367589	ENST00000367588		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
Frame-shit	ENST00000367589	ENST00000367587		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
5CDS-intron	ENST00000367589	ENST00000461346		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
intron-3CDS	ENST00000467345	ENST00000367588		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
intron-3CDS	ENST00000467345	ENST00000367587		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
intron-intron	ENST00000467345	ENST00000461346		TCGA	LD	BRCA	TCGA-A2-A04T-01A	XPR1	chr1	180601406	+	KIAA1614	chr1	180907691	+
5CDS-5UTR	ENST00000295851	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000295851	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000261017	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000261017	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000430418	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000430418	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000424558	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000424558	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000261016	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000261016	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000422511	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000422511	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
intron-5UTR	ENST00000430574	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
intron-5UTR	ENST00000430574	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000261018	ENST00000303116		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
5CDS-5UTR	ENST00000261018	ENST00000392238		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ABI2	chr2	204281804	+	FAM117B	chr2	203560604	+
intron-5UTR	ENST00000352432	ENST00000432401		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ATP2B2	chr3	10575723	-	CIDECP	chr3	10065431	-
intron-5UTR	ENST00000343816	ENST00000432401		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ATP2B2	chr3	10575723	-	CIDECP	chr3	10065431	-
intron-5UTR	ENST00000360273	ENST00000432401		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ATP2B2	chr3	10575723	-	CIDECP	chr3	10065431	-
intron-5UTR	ENST00000383800	ENST00000432401		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ATP2B2	chr3	10575723	-	CIDECP	chr3	10065431	-
5UTR-5UTR	ENST00000397077	ENST00000432401		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ATP2B2	chr3	10575723	-	CIDECP	chr3	10065431	-
intron-5UTR	ENST00000467702	ENST00000432401		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ATP2B2	chr3	10575723	-	CIDECP	chr3	10065431	-
In-frame	ENST00000262809	ENST00000487416		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
In-frame	ENST00000262809	ENST00000597711		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000262809	ENST00000397349		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000262809	ENST00000358726		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
intron-3CDS	ENST00000596124	ENST00000487416		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
intron-3CDS	ENST00000596124	ENST00000597711		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
intron-5UTR	ENST00000596124	ENST00000397349		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
intron-intron	ENST00000596124	ENST00000358726		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ELL	chr19	18632731	-	SMIM7	chr19	16758072	-
5UTR-3CDS	ENST00000359943	ENST00000313070		TCGA	LD	BRCA	TCGA-A2-A04U-01A	FAM3C	chr7	121036216	-	CADPS2	chr7	121965635	-
5UTR-3CDS	ENST00000359943	ENST00000334010		TCGA	LD	BRCA	TCGA-A2-A04U-01A	FAM3C	chr7	121036216	-	CADPS2	chr7	121965635	-
5UTR-3CDS	ENST00000359943	ENST00000412584		TCGA	LD	BRCA	TCGA-A2-A04U-01A	FAM3C	chr7	121036216	-	CADPS2	chr7	121965635	-
5UTR-3CDS	ENST00000359943	ENST00000449022		TCGA	LD	BRCA	TCGA-A2-A04U-01A	FAM3C	chr7	121036216	-	CADPS2	chr7	121965635	-
5UTR-intron	ENST00000359943	ENST00000476131		TCGA	LD	BRCA	TCGA-A2-A04U-01A	FAM3C	chr7	121036216	-	CADPS2	chr7	121965635	-
In-frame	ENST00000361924	ENST00000273183		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
In-frame	ENST00000361924	ENST00000457375		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
5CDS-3UTR	ENST00000361924	ENST00000476388		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
intron-3CDS	ENST00000435830	ENST00000273183		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
intron-3CDS	ENST00000435830	ENST00000457375		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
intron-3UTR	ENST00000435830	ENST00000476388		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
intron-3CDS	ENST00000444882	ENST00000273183		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
intron-3CDS	ENST00000444882	ENST00000457375		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
intron-3UTR	ENST00000444882	ENST00000476388		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
In-frame	ENST00000356847	ENST00000273183		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
In-frame	ENST00000356847	ENST00000457375		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
5CDS-3UTR	ENST00000356847	ENST00000476388		TCGA	LD	BRCA	TCGA-A2-A04U-01A	GOLGA4	chr3	37396678	+	STAC	chr3	36484856	+
Frame-shit	ENST00000361999	ENST00000380649		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000361999	ENST00000457468		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
5CDS-intron	ENST00000361999	ENST00000461025		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000355123	ENST00000380649		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000355123	ENST00000457468		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
5CDS-intron	ENST00000355123	ENST00000461025		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000406921	ENST00000380649		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000406921	ENST00000457468		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
5CDS-intron	ENST00000406921	ENST00000461025		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000407704	ENST00000380649		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000407704	ENST00000457468		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
intron-intron	ENST00000407704	ENST00000461025		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ITSN2	chr2	24493540	-	HADHA	chr2	26438044	-
5CDS-intron	ENST00000540746	ENST00000454903		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000406242		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000604404		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000435734		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000603181		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000604255		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000346446		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000344013		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000603449		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000406988		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000605550		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000604804		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000605552		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000535103		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000540746	ENST00000603524		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000604621		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000540746	ENST00000605677		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000454903		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000406242		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000604404		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000435734		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000603181		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000604255		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000346446		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000344013		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000603449		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000406988		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000605550		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000604804		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000605552		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000535103		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000544216	ENST00000603524		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000604621		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000544216	ENST00000605677		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000454903		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000406242		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000604404		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000435734		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000603181		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000604255		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000346446		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000344013		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000603449		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000406988		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000605550		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000604804		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000605552		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000535103		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-5UTR	ENST00000433627	ENST00000603524		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000604621		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000433627	ENST00000605677		TCGA	LD	BRCA	TCGA-A2-A04U-01A	LSM14A	chr19	34706566	+	FXYD3	chr19	35610072	+
5CDS-intron	ENST00000360772	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360772	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360772	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360772	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360772	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360772	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000359169	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000359169	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000359169	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000359169	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000359169	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000359169	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360304	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360304	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360304	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360304	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360304	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000360304	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000418370	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000418370	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000418370	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000418370	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000418370	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000418370	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000578202	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000578202	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000578202	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000578202	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000578202	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000578202	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000354792	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000354792	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000354792	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000354792	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000354792	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000354792	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000346322	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000346322	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000346322	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000346322	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000346322	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000346322	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000583087	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000583087	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000583087	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000583087	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000583087	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000583087	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000475616	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000475616	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000475616	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000475616	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000475616	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000475616	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000510775	ENST00000310351		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000510775	ENST00000488653		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000510775	ENST00000485727		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000510775	ENST00000489746		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000510775	ENST00000433542		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
intron-intron	ENST00000510775	ENST00000483247		TCGA	LD	BRCA	TCGA-A2-A04U-01A	MYLK	chr3	123512524	-	CCDC14	chr3	123616460	-
3UTR-3CDS	ENST00000482253	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
3UTR-3CDS	ENST00000482253	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
3UTR-intron	ENST00000482253	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000609116	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000609116	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
5CDS-intron	ENST00000609116	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000370197	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000370197	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
5CDS-intron	ENST00000370197	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000370198	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000370198	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
5CDS-intron	ENST00000370198	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000426398	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000426398	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
5CDS-intron	ENST00000426398	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000394184	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000394184	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
5CDS-intron	ENST00000394184	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
3UTR-3CDS	ENST00000541987	ENST00000368079		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
3UTR-3CDS	ENST00000541987	ENST00000368078		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
3UTR-intron	ENST00000541987	ENST00000467691		TCGA	LD	BRCA	TCGA-A2-A04U-01A	PTBP2	chr1	97272514	+	CASQ1	chr1	160164802	+
Frame-shit	ENST00000389327	ENST00000529064		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
Frame-shit	ENST00000389327	ENST00000425753		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
Frame-shit	ENST00000389328	ENST00000529064		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
Frame-shit	ENST00000389328	ENST00000425753		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
Frame-shit	ENST00000438773	ENST00000529064		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
Frame-shit	ENST00000438773	ENST00000425753		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000522504	ENST00000529064		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000522504	ENST00000425753		TCGA	LD	BRCA	TCGA-A2-A04U-01A	TRAPPC9	chr8	140898123	-	TSTA3	chr8	144697085	-
In-frame	ENST00000349714	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
intron-3CDS	ENST00000359226	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
In-frame	ENST00000374384	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
In-frame	ENST00000374380	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
In-frame	ENST00000374385	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
Frame-shit	ENST00000374377	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
In-frame	ENST00000397556	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
intron-3CDS	ENST00000407996	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
intron-3CDS	ENST00000540457	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
intron-3CDS	ENST00000542501	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
In-frame	ENST00000397554	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
5UTR-3CDS	ENST00000491125	ENST00000279024		TCGA	LD	BRCA	TCGA-A2-A04U-01A	UQCC1	chr20	33954360	-	KIAA1755	chr20	36856642	-
5CDS-intron	ENST00000382751	ENST00000468874		TCGA	LD	BRCA	TCGA-A2-A04U-01A	URB1	chr21	33735465	-	TMEM50B	chr21	34805109	-
5CDS-intron	ENST00000382751	ENST00000542230		TCGA	LD	BRCA	TCGA-A2-A04U-01A	URB1	chr21	33735465	-	TMEM50B	chr21	34805109	-
intron-intron	ENST00000492603	ENST00000468874		TCGA	LD	BRCA	TCGA-A2-A04U-01A	URB1	chr21	33735465	-	TMEM50B	chr21	34805109	-
intron-intron	ENST00000492603	ENST00000542230		TCGA	LD	BRCA	TCGA-A2-A04U-01A	URB1	chr21	33735465	-	TMEM50B	chr21	34805109	-
In-frame	ENST00000320610	ENST00000382004		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
5CDS-intron	ENST00000320610	ENST00000358730		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
5CDS-intron	ENST00000320610	ENST00000302303		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
5CDS-intron	ENST00000320610	ENST00000381984		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
In-frame	ENST00000253159	ENST00000382004		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
5CDS-intron	ENST00000253159	ENST00000358730		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
5CDS-intron	ENST00000253159	ENST00000302303		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
5CDS-intron	ENST00000253159	ENST00000381984		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
intron-3CDS	ENST00000583095	ENST00000382004		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
intron-intron	ENST00000583095	ENST00000358730		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
intron-intron	ENST00000583095	ENST00000302303		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
intron-intron	ENST00000583095	ENST00000381984		TCGA	LD	BRCA	TCGA-A2-A04U-01A	ZNF236	chr18	74659608	+	RFX3	chr9	3228889	-
Frame-shit	ENST00000369091	ENST00000368919		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369091	ENST00000330550		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369091	ENST00000439654		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
In-frame	ENST00000369091	ENST00000456137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000369091	ENST00000461487		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369096	ENST00000368919		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369096	ENST00000330550		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369096	ENST00000439654		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
In-frame	ENST00000369096	ENST00000456137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000369096	ENST00000461487		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369089	ENST00000368919		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369089	ENST00000330550		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000369089	ENST00000439654		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
In-frame	ENST00000369089	ENST00000456137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000369089	ENST00000461487		TCGA	LD	BRCA	TCGA-A2-A04V-01A	PRDM1	chr6	106554374	+	SLC22A16	chr6	110778220	-
5CDS-intron	ENST00000449833	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000449833	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000449833	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000449833	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409161	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409161	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409161	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000409161	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000423696	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000423696	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000423696	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000423696	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338508	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338508	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338508	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000338508	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409530	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409530	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409530	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000409530	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000449116	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000449116	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000449116	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000449116	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000357171	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000357171	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000357171	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000357171	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000468619	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000468619	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000468619	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000468619	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A04V-01A	SHANK2	chr11	70505933	-	MYEOV	chr11	69156278	+
In-frame	ENST00000608083	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
In-frame	ENST00000608083	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000377855	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000377855	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
5UTR-3CDS	ENST00000545482	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
5UTR-3CDS	ENST00000545482	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
In-frame	ENST00000361521	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
In-frame	ENST00000361521	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000377842	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000377842	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000377845	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000377845	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000541130	ENST00000401094		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
intron-3CDS	ENST00000541130	ENST00000401095		TCGA	LD	BRCA	TCGA-A2-A04W-01A	ACOT7	chr1	6453317	-	TTC34	chr1	2577002	-
Frame-shit	ENST00000368468	ENST00000368149		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119611848	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368468	ENST00000463225		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119611848	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000368466	ENST00000368149		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119611848	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368466	ENST00000463225		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119611848	-	ARHGAP18	chr6	129939997	-
5CDS-5UTR	ENST00000368468	ENST00000540664		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368468	ENST00000371103		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368468	ENST00000356016		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368468	ENST00000371097		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-intron	ENST00000368468	ENST00000498444		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368466	ENST00000540664		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368466	ENST00000371103		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368466	ENST00000356016		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000368466	ENST00000371097		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-intron	ENST00000368466	ENST00000498444		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MAN1A1	chr6	119628061	-	LCOR	chr10	98667022	+
5CDS-5UTR	ENST00000354577	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000354577	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000403834	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000403834	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368068	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368068	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
intron-5UTR	ENST00000479213	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
intron-5UTR	ENST00000479213	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368060	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368060	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368058	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368058	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
intron-5UTR	ENST00000545957	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
intron-5UTR	ENST00000545957	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368053	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000368053	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000540546	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000540546	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000539158	ENST00000369042		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000539158	ENST00000429433		TCGA	LD	BRCA	TCGA-A2-A04W-01A	MED23	chr6	131946005	-	BEND3	chr6	107420500	-
3UTR-3CDS	ENST00000525037	ENST00000240364		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
3UTR-5UTR	ENST00000525037	ENST00000513602		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
3UTR-5UTR	ENST00000525037	ENST00000514018		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
In-frame	ENST00000530173	ENST00000240364		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000530173	ENST00000513602		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000530173	ENST00000514018		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
In-frame	ENST00000322157	ENST00000240364		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000322157	ENST00000513602		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000322157	ENST00000514018		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
In-frame	ENST00000544660	ENST00000240364		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000544660	ENST00000513602		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000544660	ENST00000514018		TCGA	LD	BRCA	TCGA-A2-A04W-01A	NPEPPS	chr17	45623359	+	FAM117A	chr17	47810082	-
Frame-shit	ENST00000369110	ENST00000368503		TCGA	LD	BRCA	TCGA-A2-A04W-01A	PREP	chr6	105771540	-	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000369110	ENST00000296955		TCGA	LD	BRCA	TCGA-A2-A04W-01A	PREP	chr6	105771540	-	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000369110	ENST00000338728		TCGA	LD	BRCA	TCGA-A2-A04W-01A	PREP	chr6	105771540	-	DCBLD1	chr6	117824930	+
5CDS-intron	ENST00000369110	ENST00000534777		TCGA	LD	BRCA	TCGA-A2-A04W-01A	PREP	chr6	105771540	-	DCBLD1	chr6	117824930	+
intron-3CDS	ENST00000254066	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000254066	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-intron	ENST00000254066	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000394089	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000394089	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5UTR-intron	ENST00000394089	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000425707	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000425707	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5UTR-intron	ENST00000425707	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000394086	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000394086	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-intron	ENST00000394086	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000394081	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000394081	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-intron	ENST00000394081	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000420042	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-3CDS	ENST00000420042	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
intron-intron	ENST00000420042	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	RARA	chr17	38474700	+	CDK12	chr17	37646810	+
5CDS-intron	ENST00000240333	ENST00000445145		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000240333	ENST00000388767		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000240333	ENST00000345068		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-5UTR	ENST00000240333	ENST00000580212		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000240333	ENST00000456796		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000240333	ENST00000584969		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000240333	ENST00000577909		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000415270	ENST00000445145		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000415270	ENST00000388767		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000415270	ENST00000345068		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-5UTR	ENST00000415270	ENST00000580212		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000415270	ENST00000456796		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000415270	ENST00000584969		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
5CDS-intron	ENST00000415270	ENST00000577909		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47780220	-	CORO6	chr17	27948502	-
In-frame	ENST00000240333	ENST00000542955		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47784327	-	IGFBP4	chr17	38609237	+
In-frame	ENST00000240333	ENST00000269593		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47784327	-	IGFBP4	chr17	38609237	+
In-frame	ENST00000415270	ENST00000542955		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47784327	-	IGFBP4	chr17	38609237	+
In-frame	ENST00000415270	ENST00000269593		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SLC35B1	chr17	47784327	-	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000269033	ENST00000240333		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000269033	ENST00000415270		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000540801	ENST00000240333		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000540801	ENST00000415270		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000324677	ENST00000240333		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000324677	ENST00000415270		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000582084	ENST00000240333		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000582084	ENST00000415270		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000590153	ENST00000240333		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000590153	ENST00000415270		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000579954	ENST00000240333		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
intron-3CDS	ENST00000579954	ENST00000415270		TCGA	LD	BRCA	TCGA-A2-A04W-01A	SSH2	chr17	27957798	-	SLC35B1	chr17	47778872	-
Frame-shit	ENST00000553443	ENST00000375662		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
5CDS-5UTR	ENST00000553443	ENST00000494078		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-3CDS	ENST00000476979	ENST00000375662		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-5UTR	ENST00000476979	ENST00000494078		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-3CDS	ENST00000267368	ENST00000375662		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-5UTR	ENST00000267368	ENST00000494078		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-3CDS	ENST00000382320	ENST00000375662		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-5UTR	ENST00000382320	ENST00000494078		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-3CDS	ENST00000554555	ENST00000375662		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
intron-5UTR	ENST00000554555	ENST00000494078		TCGA	LD	BRCA	TCGA-A2-A04W-01A	TTC6	chr14	38208360	+	FAM131C	chr1	16389029	-
3UTR-intron	ENST00000494757	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000494757	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000494757	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000323571	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000323571	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000323571	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000585043	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000585043	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000585043	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394103	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394103	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394103	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
intron-intron	ENST00000536600	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
intron-intron	ENST00000536600	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
intron-intron	ENST00000536600	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000583130	ENST00000430627		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000583130	ENST00000447079		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000583130	ENST00000559545		TCGA	LD	BRCA	TCGA-A2-A04W-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37700502	+
5CDS-5UTR	ENST00000339656	ENST00000318203		TCGA	LD	BRCA	TCGA-A2-A04X-01A	ZNF587	chr19	58361439	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000423137	ENST00000318203		TCGA	LD	BRCA	TCGA-A2-A04X-01A	ZNF587	chr19	58361439	+	ZSCAN4	chr19	58187409	+
intron-5UTR	ENST00000419854	ENST00000318203		TCGA	LD	BRCA	TCGA-A2-A04X-01A	ZNF587	chr19	58361439	+	ZSCAN4	chr19	58187409	+
intron-5UTR	ENST00000596433	ENST00000318203		TCGA	LD	BRCA	TCGA-A2-A04X-01A	ZNF587	chr19	58361439	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000297579	ENST00000501396		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000297579	ENST00000502082		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000297579	ENST00000523825		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-intron	ENST00000297579	ENST00000502056		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521716	ENST00000501396		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521716	ENST00000502082		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521716	ENST00000523825		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-intron	ENST00000521716	ENST00000502056		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521971	ENST00000501396		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521971	ENST00000502082		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521971	ENST00000523825		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-intron	ENST00000521971	ENST00000502056		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521999	ENST00000501396		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521999	ENST00000502082		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521999	ENST00000523825		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-intron	ENST00000521999	ENST00000502056		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000519682	ENST00000501396		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000519682	ENST00000502082		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000519682	ENST00000523825		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
5CDS-intron	ENST00000519682	ENST00000502056		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	DCAF13	chr8	104433310	+	CASC8	chr8	128302305	-
intron-3CDS	ENST00000408388	ENST00000360863		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	PVT1	chr8	128951922	+	RGS22	chr8	101020797	-
intron-3CDS	ENST00000408388	ENST00000523287		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	PVT1	chr8	128951922	+	RGS22	chr8	101020797	-
intron-3CDS	ENST00000408388	ENST00000523437		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	PVT1	chr8	128951922	+	RGS22	chr8	101020797	-
intron-intron	ENST00000408388	ENST00000519421		TCGA	LD	BRCA	TCGA-A2-A04Y-01A	PVT1	chr8	128951922	+	RGS22	chr8	101020797	-
In-frame	ENST00000370449	ENST00000429989		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370449	ENST00000481124		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370449	ENST00000372164		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370449	ENST00000372158		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370449	ENST00000341863		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370449	ENST00000372156		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370449	ENST00000265450		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
In-frame	ENST00000370434	ENST00000429989		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370434	ENST00000481124		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370434	ENST00000372164		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370434	ENST00000372158		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370434	ENST00000341863		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370434	ENST00000372156		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
5CDS-intron	ENST00000370434	ENST00000265450		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-3CDS	ENST00000496621	ENST00000429989		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-intron	ENST00000496621	ENST00000481124		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-intron	ENST00000496621	ENST00000372164		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-intron	ENST00000496621	ENST00000372158		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-intron	ENST00000496621	ENST00000341863		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-intron	ENST00000496621	ENST00000372156		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
3UTR-intron	ENST00000496621	ENST00000265450		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ABCC2	chr10	101552116	+	TSPAN14	chr10	82264484	+
Frame-shit	ENST00000336498	ENST00000274008		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ARHGAP10	chr4	148778805	+	SPATA5	chr4	124235043	+
5CDS-intron	ENST00000336498	ENST00000422835		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ARHGAP10	chr4	148778805	+	SPATA5	chr4	124235043	+
intron-3CDS	ENST00000414545	ENST00000274008		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ARHGAP10	chr4	148778805	+	SPATA5	chr4	124235043	+
intron-intron	ENST00000414545	ENST00000422835		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ARHGAP10	chr4	148778805	+	SPATA5	chr4	124235043	+
intron-3CDS	ENST00000510076	ENST00000274008		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ARHGAP10	chr4	148778805	+	SPATA5	chr4	124235043	+
intron-intron	ENST00000510076	ENST00000422835		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	ARHGAP10	chr4	148778805	+	SPATA5	chr4	124235043	+
Frame-shit	ENST00000458420	ENST00000295992		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CLSTN2	chr3	140285052	+	PCOLCE2	chr3	142539887	-
In-frame	ENST00000458420	ENST00000485766		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CLSTN2	chr3	140285052	+	PCOLCE2	chr3	142539887	-
5CDS-intron	ENST00000458420	ENST00000461818		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CLSTN2	chr3	140285052	+	PCOLCE2	chr3	142539887	-
Frame-shit	ENST00000378863	ENST00000521992		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378863	ENST00000541580		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378863	ENST00000319165		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378863	ENST00000518005		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378863	ENST00000290567		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378863	ENST00000520435		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
3UTR-3CDS	ENST00000452938	ENST00000521992		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
3UTR-intron	ENST00000452938	ENST00000541580		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
3UTR-intron	ENST00000452938	ENST00000319165		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
3UTR-intron	ENST00000452938	ENST00000518005		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
3UTR-intron	ENST00000452938	ENST00000290567		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
3UTR-intron	ENST00000452938	ENST00000520435		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
Frame-shit	ENST00000378868	ENST00000521992		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378868	ENST00000541580		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378868	ENST00000319165		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378868	ENST00000518005		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378868	ENST00000290567		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000378868	ENST00000520435		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
In-frame	ENST00000464921	ENST00000521992		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000464921	ENST00000541580		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000464921	ENST00000319165		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000464921	ENST00000518005		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000464921	ENST00000290567		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-intron	ENST00000464921	ENST00000520435		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	CRLS1	chr20	6015201	+	CES5A	chr16	55903656	-
5CDS-3UTR	ENST00000340149	ENST00000281030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GAB2	chr11	77991647	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000361507	ENST00000281030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GAB2	chr11	77991647	-	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000526030	ENST00000281030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GAB2	chr11	77991647	-	THRSP	chr11	77778705	+
Frame-shit	ENST00000392993	ENST00000282488		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000282486		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000355460		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000493459		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000324210		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000498502		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000545754		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000357472		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000324196		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000485910		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000463374		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000492948		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000392993	ENST00000485509		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000392993	ENST00000461436		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000282488		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000282486		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000355460		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000493459		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000324210		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000498502		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000545754		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000357472		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000324196		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000485910		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000463374		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000492948		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000544571	ENST00000485509		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000544571	ENST00000461436		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000282488		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000282486		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000355460		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000493459		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000324210		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000498502		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000545754		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000357472		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000324196		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000485910		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000463374		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000492948		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000466685	ENST00000485509		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
5UTR-intron	ENST00000466685	ENST00000461436		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	GK5	chr3	141932368	-	MBNL1	chr3	152132730	+
Frame-shit	ENST00000534064	ENST00000340149		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000534064	ENST00000361507		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000534064	ENST00000526030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000535943	ENST00000340149		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000535943	ENST00000361507		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000535943	ENST00000526030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000525931	ENST00000340149		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000525931	ENST00000361507		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-5UTR	ENST00000525931	ENST00000526030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000529807	ENST00000340149		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000529807	ENST00000361507		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-5UTR	ENST00000529807	ENST00000526030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000527522	ENST00000340149		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000527522	ENST00000361507		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
intron-5UTR	ENST00000527522	ENST00000526030		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	INTS4	chr11	77594878	-	GAB2	chr11	77938097	-
5UTR-3CDS	ENST00000457734	ENST00000343735		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	PLS1	chr3	142315351	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000457734	ENST00000183605		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	PLS1	chr3	142315351	+	CLDN18	chr3	137742500	+
intron-3CDS	ENST00000337777	ENST00000343735		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	PLS1	chr3	142315351	+	CLDN18	chr3	137742500	+
intron-3CDS	ENST00000337777	ENST00000183605		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	PLS1	chr3	142315351	+	CLDN18	chr3	137742500	+
intron-3CDS	ENST00000497002	ENST00000343735		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	PLS1	chr3	142315351	+	CLDN18	chr3	137742500	+
intron-3CDS	ENST00000497002	ENST00000183605		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	PLS1	chr3	142315351	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000369005	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000369005	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000369005	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000369005	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000369005	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-intron	ENST00000369005	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000513429	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000513429	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000513429	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000513429	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000513429	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-intron	ENST00000513429	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515273	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515273	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515273	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515273	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515273	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-intron	ENST00000515273	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515603	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515603	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515603	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515603	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000515603	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-intron	ENST00000515603	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000453444	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000453444	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000453444	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000453444	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000453444	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000453444	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000358010	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000358010	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000358010	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000358010	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000358010	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000358010	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000334433	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000334433	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000334433	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000334433	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000334433	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000334433	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369001	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369001	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369001	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369001	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369001	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000369001	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369000	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369000	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369000	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369000	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369000	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000369000	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000360561	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000360561	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000360561	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000360561	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000360561	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000360561	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000368999	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000368999	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000368999	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000368999	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000368999	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000368999	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369004	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369004	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369004	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369004	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000369004	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000369004	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000260733	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000260733	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000260733	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000260733	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000260733	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000260733	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000493951	ENST00000401998		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000493951	ENST00000361114		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000493951	ENST00000398761		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000493951	ENST00000418483		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-3CDS	ENST00000493951	ENST00000398763		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
intron-intron	ENST00000493951	ENST00000604025		TCGA	LD	BRCA	TCGA-A2-A0CL-01A	TACC2	chr10	123749003	+	MICU1	chr10	74135630	-
5UTR-3CDS	ENST00000264977	ENST00000471595		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000264977	ENST00000478469		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000264977	ENST00000251654		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000264977	ENST00000483687		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000264977	ENST00000490504		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000264977	ENST00000466072		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000264977	ENST00000482086		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000264977	ENST00000468777		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000264977	ENST00000462637		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000264977	ENST00000469217		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000264977	ENST00000474833		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000490467	ENST00000471595		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000490467	ENST00000478469		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000490467	ENST00000251654		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000490467	ENST00000483687		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000490467	ENST00000490504		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000490467	ENST00000466072		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000490467	ENST00000482086		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000490467	ENST00000468777		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000490467	ENST00000462637		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000490467	ENST00000469217		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000490467	ENST00000474833		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000334546	ENST00000471595		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000334546	ENST00000478469		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000334546	ENST00000251654		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000334546	ENST00000483687		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000334546	ENST00000490504		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000334546	ENST00000466072		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000334546	ENST00000482086		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000334546	ENST00000468777		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000334546	ENST00000462637		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000334546	ENST00000469217		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000334546	ENST00000474833		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000492624	ENST00000471595		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000492624	ENST00000478469		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000492624	ENST00000251654		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000492624	ENST00000483687		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000492624	ENST00000490504		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000492624	ENST00000466072		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000492624	ENST00000482086		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000492624	ENST00000468777		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000492624	ENST00000462637		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000492624	ENST00000469217		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000492624	ENST00000474833		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000469270	ENST00000471595		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000469270	ENST00000478469		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000469270	ENST00000251654		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000469270	ENST00000483687		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000469270	ENST00000490504		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-3CDS	ENST00000469270	ENST00000466072		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000469270	ENST00000482086		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000469270	ENST00000468777		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000469270	ENST00000462637		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000469270	ENST00000469217		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
intron-intron	ENST00000469270	ENST00000474833		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	PPP2R3A	chr3	135684691	+	PCCB	chr3	135974698	+
5CDS-5UTR	ENST00000389467	ENST00000322989		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000389467	ENST00000563390		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-intron	ENST00000389467	ENST00000575669		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000389467	ENST00000576436		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000389467	ENST00000565420		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000389467	ENST00000569083		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000446231	ENST00000322989		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000446231	ENST00000563390		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-intron	ENST00000446231	ENST00000575669		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000446231	ENST00000576436		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000446231	ENST00000565420		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5CDS-5UTR	ENST00000446231	ENST00000569083		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
intron-5UTR	ENST00000565224	ENST00000322989		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
intron-5UTR	ENST00000565224	ENST00000563390		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
intron-intron	ENST00000565224	ENST00000575669		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
intron-5UTR	ENST00000565224	ENST00000576436		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
intron-5UTR	ENST00000565224	ENST00000565420		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
intron-5UTR	ENST00000565224	ENST00000569083		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5UTR-5UTR	ENST00000567737	ENST00000322989		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5UTR-5UTR	ENST00000567737	ENST00000563390		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5UTR-intron	ENST00000567737	ENST00000575669		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5UTR-5UTR	ENST00000567737	ENST00000576436		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5UTR-5UTR	ENST00000567737	ENST00000565420		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
5UTR-5UTR	ENST00000567737	ENST00000569083		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	SMG1	chr16	18937272	-	RPS15A	chr16	18800440	-
Frame-shit	ENST00000348165	ENST00000429029		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
Frame-shit	ENST00000348165	ENST00000262177		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
5CDS-intron	ENST00000348165	ENST00000452797		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
5CDS-intron	ENST00000348165	ENST00000443280		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
5CDS-intron	ENST00000348165	ENST00000494267		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
intron-3CDS	ENST00000389103	ENST00000429029		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
intron-3CDS	ENST00000389103	ENST00000262177		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
intron-intron	ENST00000389103	ENST00000452797		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
intron-intron	ENST00000389103	ENST00000443280		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
intron-intron	ENST00000389103	ENST00000494267		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	UBE3C	chr7	156956557	+	DNAJB6	chr7	157155855	+
Frame-shit	ENST00000273038	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-5UTR	ENST00000273038	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-intron	ENST00000273038	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-intron	ENST00000273038	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-intron	ENST00000273038	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-intron	ENST00000273038	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-intron	ENST00000273038	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-3CDS	ENST00000430365	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-5UTR	ENST00000430365	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000430365	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000430365	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000430365	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000430365	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000430365	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-3CDS	ENST00000404339	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-5UTR	ENST00000404339	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-intron	ENST00000404339	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-intron	ENST00000404339	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-intron	ENST00000404339	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-intron	ENST00000404339	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5UTR-intron	ENST00000404339	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-3CDS	ENST00000480288	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-5UTR	ENST00000480288	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000480288	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000480288	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000480288	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000480288	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000480288	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-3CDS	ENST00000413604	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-5UTR	ENST00000413604	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000413604	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000413604	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000413604	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000413604	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000413604	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-3CDS	ENST00000451674	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-5UTR	ENST00000451674	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000451674	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000451674	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000451674	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000451674	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000451674	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-3CDS	ENST00000424529	ENST00000357559		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-5UTR	ENST00000424529	ENST00000305586		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000424529	ENST00000491674		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000424529	ENST00000491062		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000424529	ENST00000468861		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000424529	ENST00000445140		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
intron-intron	ENST00000424529	ENST00000480918		TCGA	LD	BRCA	TCGA-A2-A0CM-01A	VGLL4	chr3	11744445	-	FXR1	chr3	180651122	+
5CDS-5UTR	ENST00000181839	ENST00000287916		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-intron	ENST00000181839	ENST00000535571		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-5UTR	ENST00000181839	ENST00000394605		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-intron	ENST00000181839	ENST00000478752		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-5UTR	ENST00000340829	ENST00000287916		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-intron	ENST00000340829	ENST00000535571		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-5UTR	ENST00000340829	ENST00000394605		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
5CDS-intron	ENST00000340829	ENST00000478752		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
3UTR-5UTR	ENST00000484589	ENST00000287916		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
3UTR-intron	ENST00000484589	ENST00000535571		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
3UTR-5UTR	ENST00000484589	ENST00000394605		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
3UTR-intron	ENST00000484589	ENST00000478752		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	CDK13	chr7	40102699	+	CLDN12	chr7	90034833	+
intron-3CDS	ENST00000599680	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000309877	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000600911	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000596822	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000601291	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000377139	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000597198	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000593922	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000600022	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000599223	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000596765	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000599144	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000598808	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000377135	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000442265	ENST00000461719		TCGA	LD	BRCA	TCGA-A2-A0CO-01A	IRF3	chr19	50166906	-	IGHJ4	chr14	106330467	-
In-frame	ENST00000379672	ENST00000572933		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
In-frame	ENST00000379672	ENST00000389173		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
5CDS-intron	ENST00000379672	ENST00000570791		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
5CDS-intron	ENST00000379672	ENST00000082259		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
In-frame	ENST00000340825	ENST00000572933		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
In-frame	ENST00000340825	ENST00000389173		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
5CDS-intron	ENST00000340825	ENST00000570791		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
5CDS-intron	ENST00000340825	ENST00000082259		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
In-frame	ENST00000262444	ENST00000572933		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
In-frame	ENST00000262444	ENST00000389173		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
5CDS-intron	ENST00000262444	ENST00000570791		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
5CDS-intron	ENST00000262444	ENST00000082259		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
intron-3CDS	ENST00000578087	ENST00000572933		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
intron-3CDS	ENST00000578087	ENST00000389173		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
intron-intron	ENST00000578087	ENST00000570791		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
intron-intron	ENST00000578087	ENST00000082259		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ARHGAP44	chr17	12693208	+	DNAH2	chr17	7704896	+
Frame-shit	ENST00000397035	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000397041	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000309890	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000397039	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000359983	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000352011	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000397043	ENST00000334134		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	ATP2A3	chr17	3832622	-	FGF3	chr11	69625468	-
Frame-shit	ENST00000294304	ENST00000346672		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
Frame-shit	ENST00000294304	ENST00000360962		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000294304	ENST00000527634		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000294304	ENST00000540737		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000294304	ENST00000532565		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000294304	ENST00000525449		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
5CDS-3UTR	ENST00000294304	ENST00000527368		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000529481	ENST00000346672		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000529481	ENST00000360962		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000529481	ENST00000527634		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000529481	ENST00000540737		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000529481	ENST00000532565		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000529481	ENST00000525449		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
intron-3UTR	ENST00000529481	ENST00000527368		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	LRP5	chr11	68183995	+	C11orf80	chr11	66526514	+
In-frame	ENST00000226105	ENST00000294304		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
5CDS-intron	ENST00000226105	ENST00000529481		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
In-frame	ENST00000407006	ENST00000294304		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
5CDS-intron	ENST00000407006	ENST00000529481		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
In-frame	ENST00000580434	ENST00000294304		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
5CDS-intron	ENST00000580434	ENST00000529481		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
In-frame	ENST00000439238	ENST00000294304		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
5CDS-intron	ENST00000439238	ENST00000529481		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	RANGRF	chr17	8192732	+	LRP5	chr11	68177382	+
In-frame	ENST00000357552	ENST00000311275		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000360911		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000458360		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000262975		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000471951		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000352431		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000396281		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000446994		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000536340		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000355972		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000540497		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000461685		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000372023		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000357552	ENST00000468376		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
Frame-shit	ENST00000371001	ENST00000311275		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000360911		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000458360		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000262975		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000471951		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000352431		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000396281		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000446994		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000536340		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000355972		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000540497		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000461685		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000372023		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-intron	ENST00000371001	ENST00000468376		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-3CDS	ENST00000476314	ENST00000311275		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000360911		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000458360		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000262975		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000471951		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000352431		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000396281		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000446994		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000536340		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000355972		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000540497		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000461685		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000372023		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
intron-intron	ENST00000476314	ENST00000468376		TCGA	LD	BRCA	TCGA-A2-A0CT-01A	SYCP2	chr20	58467045	-	ZMYND8	chr20	45927691	-
5CDS-5UTR	ENST00000375482	ENST00000442668		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000375482	ENST00000358855		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000375482	ENST00000545558		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000375482	ENST00000535387		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000375482	ENST00000542053		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000375482	ENST00000543985		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000416701	ENST00000442668		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000416701	ENST00000358855		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000416701	ENST00000545558		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000416701	ENST00000535387		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000416701	ENST00000542053		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000416701	ENST00000543985		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
intron-5UTR	ENST00000468206	ENST00000442668		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
intron-5UTR	ENST00000468206	ENST00000358855		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
intron-5UTR	ENST00000468206	ENST00000545558		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
intron-intron	ENST00000468206	ENST00000535387		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
intron-intron	ENST00000468206	ENST00000542053		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
intron-5UTR	ENST00000468206	ENST00000543985		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000337352	ENST00000442668		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000337352	ENST00000358855		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000337352	ENST00000545558		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000337352	ENST00000535387		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000337352	ENST00000542053		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000337352	ENST00000543985		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000538555	ENST00000442668		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000538555	ENST00000358855		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000538555	ENST00000545558		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000538555	ENST00000535387		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-intron	ENST00000538555	ENST00000542053		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
5CDS-5UTR	ENST00000538555	ENST00000543985		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	FGD3	chr9	95784671	+	NOL8	chr9	95086491	-
3UTR-3CDS	ENST00000318607	ENST00000320005		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
3UTR-intron	ENST00000318607	ENST00000519777		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
3UTR-3CDS	ENST00000519004	ENST00000320005		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
3UTR-intron	ENST00000519004	ENST00000519777		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
3UTR-3CDS	ENST00000522387	ENST00000320005		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
3UTR-intron	ENST00000522387	ENST00000519777		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
intron-3CDS	ENST00000519596	ENST00000320005		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
intron-intron	ENST00000519596	ENST00000519777		TCGA	LD	BRCA	TCGA-A2-A0CU-01A	PABPC1	chr8	101716525	-	CNGB3	chr8	87623899	-
5CDS-3UTR	ENST00000333229	ENST00000462274		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000333229	ENST00000338785		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000333229	ENST00000451934		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000333229	ENST00000321219		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000333229	ENST00000339659		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000333229	ENST00000398960		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000333229	ENST00000398956		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-intron	ENST00000333229	ENST00000455387		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000462274		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000338785		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000451934		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000321219		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000339659		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000398960		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000342449	ENST00000398956		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-intron	ENST00000342449	ENST00000455387		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000462274		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000338785		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000451934		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000321219		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000339659		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000398960		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000380800	ENST00000398956		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-intron	ENST00000380800	ENST00000455387		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000462274		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000338785		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000451934		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000321219		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000339659		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000398960		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000341322	ENST00000398956		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-intron	ENST00000341322	ENST00000455387		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000462274		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000338785		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000451934		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000321219		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000339659		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000398960		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-3UTR	ENST00000470108	ENST00000398956		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
intron-intron	ENST00000470108	ENST00000455387		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	BRWD1	chr21	40584592	-	DYRK1A	chr21	38844986	+
5CDS-3UTR	ENST00000355854	ENST00000489088		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000355854	ENST00000389704		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000347776	ENST00000489088		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000347776	ENST00000389704		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000409308	ENST00000489088		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000409308	ENST00000389704		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000410043	ENST00000489088		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000410043	ENST00000389704		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000409130	ENST00000489088		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
5CDS-3UTR	ENST00000409130	ENST00000389704		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
intron-3UTR	ENST00000476943	ENST00000489088		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
intron-3UTR	ENST00000476943	ENST00000389704		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CAB39L	chr13	49918315	-	EXOSC8	chr13	37576625	+
intron-3CDS	ENST00000337620	ENST00000389266		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CBX3	chr7	26241446	+	GARS	chr7	30665850	+
5UTR-3CDS	ENST00000396386	ENST00000389266		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CBX3	chr7	26241446	+	GARS	chr7	30665850	+
5UTR-3CDS	ENST00000409747	ENST00000389266		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CBX3	chr7	26241446	+	GARS	chr7	30665850	+
intron-3CDS	ENST00000497498	ENST00000389266		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	CBX3	chr7	26241446	+	GARS	chr7	30665850	+
Frame-shit	ENST00000360631	ENST00000258646		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
In-frame	ENST00000360631	ENST00000378302		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
5CDS-5UTR	ENST00000360631	ENST00000471984		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
5CDS-intron	ENST00000360631	ENST00000546015		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
Frame-shit	ENST00000255448	ENST00000258646		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
In-frame	ENST00000255448	ENST00000378302		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
5CDS-5UTR	ENST00000255448	ENST00000471984		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
5CDS-intron	ENST00000255448	ENST00000546015		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
Frame-shit	ENST00000379892	ENST00000258646		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
In-frame	ENST00000379892	ENST00000378302		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
5CDS-5UTR	ENST00000379892	ENST00000471984		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
5CDS-intron	ENST00000379892	ENST00000546015		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-3CDS	ENST00000379893	ENST00000258646		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-3CDS	ENST00000379893	ENST00000378302		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-5UTR	ENST00000379893	ENST00000471984		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-intron	ENST00000379893	ENST00000546015		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-3CDS	ENST00000460982	ENST00000258646		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-3CDS	ENST00000460982	ENST00000378302		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-5UTR	ENST00000460982	ENST00000471984		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-intron	ENST00000460982	ENST00000546015		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DCLK1	chr13	36445361	-	RCBTB1	chr13	50108398	-
intron-3CDS	ENST00000462274	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-3CDS	ENST00000462274	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-3CDS	ENST00000462274	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-intron	ENST00000462274	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-intron	ENST00000462274	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000338785	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000338785	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000338785	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000338785	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000338785	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000451934	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000451934	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000451934	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000451934	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000451934	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000321219	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000321219	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000321219	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000321219	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000321219	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000339659	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000339659	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000339659	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000339659	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000339659	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000398960	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000398960	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000398960	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000398960	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000398960	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000398956	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000398956	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000398956	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000398956	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
5CDS-intron	ENST00000398956	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-3CDS	ENST00000455387	ENST00000333229		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-3CDS	ENST00000455387	ENST00000342449		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-3CDS	ENST00000455387	ENST00000380800		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-intron	ENST00000455387	ENST00000341322		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
intron-intron	ENST00000455387	ENST00000470108		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	DYRK1A	chr21	38792686	+	BRWD1	chr21	40574471	-
Frame-shit	ENST00000271915	ENST00000368424		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
Frame-shit	ENST00000271915	ENST00000295536		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
Frame-shit	ENST00000361147	ENST00000368424		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
Frame-shit	ENST00000361147	ENST00000295536		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
In-frame	ENST00000358505	ENST00000368424		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
In-frame	ENST00000358505	ENST00000295536		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
intron-3CDS	ENST00000515643	ENST00000368424		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
intron-3CDS	ENST00000515643	ENST00000295536		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	KCNN3	chr1	154794565	-	DCST2	chr1	154999191	-
5UTR-3CDS	ENST00000599470	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
5UTR-3CDS	ENST00000321944	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
5UTR-3CDS	ENST00000358301	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
3UTR-3CDS	ENST00000597766	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
5UTR-3CDS	ENST00000593690	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
5UTR-3CDS	ENST00000599386	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
intron-3CDS	ENST00000435673	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
intron-3CDS	ENST00000360442	ENST00000301141		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	PAK4	chr19	39616559	+	CYP2A6	chr19	41354668	-
Frame-shit	ENST00000344041	ENST00000242152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
Frame-shit	ENST00000344041	ENST00000407573		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
Frame-shit	ENST00000344041	ENST00000405982		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000475788	ENST00000242152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000475788	ENST00000407573		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000475788	ENST00000405982		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000405243	ENST00000242152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000405243	ENST00000407573		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000405243	ENST00000405982		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
Frame-shit	ENST00000401957	ENST00000242152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
Frame-shit	ENST00000401957	ENST00000407573		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
Frame-shit	ENST00000401957	ENST00000405982		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	RAPGEF5	chr7	22165222	-	NPY	chr7	24329118	+
intron-3CDS	ENST00000454800	ENST00000610140		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000454800	ENST00000381626		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000454800	ENST00000396152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000454800	ENST00000242210		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000454800	ENST00000405342		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000454800	ENST00000409467		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000454800	ENST00000409787		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000610140		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000381626		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000396152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000242210		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000405342		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000409467		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000398341	ENST00000409787		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000610140		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000381626		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000396152		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000242210		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000405342		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000409467		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000352133	ENST00000409787		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	SLC37A1	chr21	43974252	+	NT5C3A	chr7	33057213	-
In-frame	ENST00000396671	ENST00000157600		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
In-frame	ENST00000396671	ENST00000535732		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000396671	ENST00000454244		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000396671	ENST00000397386		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
In-frame	ENST00000356447	ENST00000157600		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
In-frame	ENST00000356447	ENST00000535732		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000356447	ENST00000454244		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000356447	ENST00000397386		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
Frame-shit	ENST00000416420	ENST00000157600		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
Frame-shit	ENST00000416420	ENST00000535732		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000416420	ENST00000454244		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000416420	ENST00000397386		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
In-frame	ENST00000280696	ENST00000157600		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
In-frame	ENST00000280696	ENST00000535732		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-intron	ENST00000280696	ENST00000454244		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
5CDS-5UTR	ENST00000280696	ENST00000397386		TCGA	LD	BRCA	TCGA-A2-A0CW-01A	THRB	chr3	24184992	-	LMCD1	chr3	8574423	+
Frame-shit	ENST00000309156	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000309156	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000309156	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000309156	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000309185	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000309185	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000309185	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000309185	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000394211	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000394211	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000394211	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000394211	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
intron-3CDS	ENST00000578702	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
intron-3CDS	ENST00000578702	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
intron-5UTR	ENST00000578702	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
intron-5UTR	ENST00000578702	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000445327	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000445327	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000445327	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000445327	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000394209	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000394209	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000394209	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000394209	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000394204	ENST00000559488		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000394204	ENST00000571680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000394204	ENST00000435993		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000394204	ENST00000560629		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	GRB7	chr17	37900460	+	ITGB3	chr17	45351785	+
intron-intron	ENST00000379388	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	HIVEP1	chr6	12009108	+	OFCC1	chr6	10159732	-
intron-intron	ENST00000379388	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	HIVEP1	chr6	12009108	+	OFCC1	chr6	10159732	-
intron-intron	ENST00000484210	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	HIVEP1	chr6	12009108	+	OFCC1	chr6	10159732	-
intron-intron	ENST00000484210	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	HIVEP1	chr6	12009108	+	OFCC1	chr6	10159732	-
intron-intron	ENST00000541134	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	HIVEP1	chr6	12009108	+	OFCC1	chr6	10159732	-
intron-intron	ENST00000541134	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	HIVEP1	chr6	12009108	+	OFCC1	chr6	10159732	-
3UTR-5UTR	ENST00000474485	ENST00000472091		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	NOL7	chr6	13618033	+	ERVFRD-1	chr6	11105863	-
3UTR-5UTR	ENST00000474485	ENST00000542862		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	NOL7	chr6	13618033	+	ERVFRD-1	chr6	11105863	-
5CDS-5UTR	ENST00000451315	ENST00000472091		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	NOL7	chr6	13618033	+	ERVFRD-1	chr6	11105863	-
5CDS-5UTR	ENST00000451315	ENST00000542862		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	NOL7	chr6	13618033	+	ERVFRD-1	chr6	11105863	-
intron-5UTR	ENST00000316020	ENST00000488834		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000474597		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000244763		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000397511		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000534851		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000489567		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000479365		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000316020	ENST00000462112		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000488834		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000474597		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000244763		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000397511		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000534851		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000489567		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000479365		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
intron-5UTR	ENST00000472329	ENST00000462112		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	OFCC1	chr6	9769164	-	SSR1	chr6	7310262	-
5CDS-3UTR	ENST00000262293	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
5CDS-intron	ENST00000262293	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	PRR11	chr17	57247241	+	IKZF3	chr17	37921401	-
In-frame	ENST00000535829	ENST00000299665		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	RIMKLB	chr12	8866637	+	CLEC4D	chr12	8667832	+
In-frame	ENST00000357529	ENST00000299665		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	RIMKLB	chr12	8866637	+	CLEC4D	chr12	8667832	+
3UTR-3CDS	ENST00000299673	ENST00000299665		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	RIMKLB	chr12	8866637	+	CLEC4D	chr12	8667832	+
In-frame	ENST00000538135	ENST00000299665		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	RIMKLB	chr12	8866637	+	CLEC4D	chr12	8667832	+
In-frame	ENST00000313050	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000313050	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000467838	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000467838	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000371706	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000371706	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000313084	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000313084	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000290037	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000290037	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000431893	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
In-frame	ENST00000431893	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000398335	ENST00000371746		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000398335	ENST00000371748		TCGA	LD	BRCA	TCGA-A2-A0CX-01A	SEC16A	chr9	139362867	-	LHX3	chr9	139092599	-
5CDS-5UTR	ENST00000302640	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
5CDS-5UTR	ENST00000354582	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
5CDS-5UTR	ENST00000423119	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
5CDS-5UTR	ENST00000456211	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
5CDS-5UTR	ENST00000357086	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
intron-5UTR	ENST00000544951	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
5CDS-5UTR	ENST00000443694	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
intron-5UTR	ENST00000463980	ENST00000414938		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	ITPR1	chr3	4821329	+	EGOT	chr3	4791694	-
5CDS-5UTR	ENST00000321105	ENST00000461237		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000321105	ENST00000247270		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000321105	ENST00000462804		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000540524	ENST00000461237		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000540524	ENST00000247270		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000540524	ENST00000462804		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000542570	ENST00000461237		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000542570	ENST00000247270		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
5CDS-5UTR	ENST00000542570	ENST00000462804		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
intron-5UTR	ENST00000582230	ENST00000461237		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
intron-5UTR	ENST00000582230	ENST00000247270		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
intron-5UTR	ENST00000582230	ENST00000462804		TCGA	LD	BRCA	TCGA-A2-A0CY-01A	TOP3A	chr17	18186012	-	EVI2A	chr17	29646041	-
intron-3CDS	ENST00000315769	ENST00000260128		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000315769	ENST00000458141		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000315769	ENST00000402687		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000315769	ENST00000419716		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3UTR	ENST00000315769	ENST00000521946		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000297737	ENST00000260128		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000297737	ENST00000458141		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000297737	ENST00000402687		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000297737	ENST00000419716		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3UTR	ENST00000297737	ENST00000521946		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000523823	ENST00000260128		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000523823	ENST00000458141		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000523823	ENST00000402687		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3CDS	ENST00000523823	ENST00000419716		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
intron-3UTR	ENST00000523823	ENST00000521946		TCGA	LD	BRCA	TCGA-A2-A0CZ-01A	ZMAT4	chr8	40666028	-	SULF1	chr8	70550970	+
5CDS-5UTR	ENST00000263398	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
intron-5UTR	ENST00000526025	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000449691	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000360158	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000415148	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000437706	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000433354	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000428726	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
intron-5UTR	ENST00000526669	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000433892	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
intron-5UTR	ENST00000278386	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000434472	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000352818	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
intron-5UTR	ENST00000528922	ENST00000502463		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	CD44	chr11	35211612	+	CASC11	chr8	128746205	-
Frame-shit	ENST00000279024	ENST00000370836		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	KIAA1755	chr20	36851940	-	HS6ST2	chrX	131763121	-
Frame-shit	ENST00000279024	ENST00000521489		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	KIAA1755	chr20	36851940	-	HS6ST2	chrX	131763121	-
Frame-shit	ENST00000279024	ENST00000370833		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	KIAA1755	chr20	36851940	-	HS6ST2	chrX	131763121	-
In-frame	ENST00000279024	ENST00000406696		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	KIAA1755	chr20	36851940	-	HS6ST2	chrX	131763121	-
5CDS-intron	ENST00000279024	ENST00000602570		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	KIAA1755	chr20	36851940	-	HS6ST2	chrX	131763121	-
Frame-shit	ENST00000440886	ENST00000328299		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	LPAR3	chr1	85331068	-	ST6GALNAC3	chr1	77093137	+
5CDS-intron	ENST00000440886	ENST00000464140		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	LPAR3	chr1	85331068	-	ST6GALNAC3	chr1	77093137	+
Frame-shit	ENST00000370611	ENST00000328299		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	LPAR3	chr1	85331068	-	ST6GALNAC3	chr1	77093137	+
5CDS-intron	ENST00000370611	ENST00000464140		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	LPAR3	chr1	85331068	-	ST6GALNAC3	chr1	77093137	+
5UTR-3CDS	ENST00000491034	ENST00000328299		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	LPAR3	chr1	85331068	-	ST6GALNAC3	chr1	77093137	+
5UTR-intron	ENST00000491034	ENST00000464140		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	LPAR3	chr1	85331068	-	ST6GALNAC3	chr1	77093137	+
5CDS-5UTR	ENST00000424082	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000424082	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000424082	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000424082	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000259351	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000259351	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000259351	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000259351	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000394022	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000394022	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000394022	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000394022	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000373436	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000373436	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000373436	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000373436	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000373434	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000373434	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000373434	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000373434	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000394011	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000394011	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000394011	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000394011	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
3UTR-5UTR	ENST00000480993	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
3UTR-5UTR	ENST00000480993	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
3UTR-intron	ENST00000480993	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
3UTR-intron	ENST00000480993	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS1	chr9	129728230	+	TYRP1	chr9	12693912	+
Frame-shit	ENST00000367635	ENST00000448150		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000367635	ENST00000367649		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
5CDS-3UTR	ENST00000367635	ENST00000465723		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
5CDS-intron	ENST00000367635	ENST00000462775		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000367634	ENST00000448150		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000367634	ENST00000367649		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
5CDS-3UTR	ENST00000367634	ENST00000465723		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
5CDS-intron	ENST00000367634	ENST00000462775		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
intron-3CDS	ENST00000477383	ENST00000448150		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
intron-3CDS	ENST00000477383	ENST00000367649		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
intron-3UTR	ENST00000477383	ENST00000465723		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
intron-intron	ENST00000477383	ENST00000462775		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	RALGPS2	chr1	178754742	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000264896	ENST00000522695		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000524300		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000523558		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000521210		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000355780		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000519961		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000521727		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000521451		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000522509		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000264896	ENST00000517542		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5CDS-intron	ENST00000264896	ENST00000524104		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5CDS-intron	ENST00000264896	ENST00000522962		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5CDS-intron	ENST00000264896	ENST00000521419		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000522695		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000524300		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000523558		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000521210		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000355780		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000519961		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000521727		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000521451		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000522509		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
Frame-shit	ENST00000452464	ENST00000517542		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5CDS-intron	ENST00000452464	ENST00000524104		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5CDS-intron	ENST00000452464	ENST00000522962		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5CDS-intron	ENST00000452464	ENST00000521419		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SCARB2	chr4	77116860	-	STAU2	chr8	74495065	-
5UTR-3CDS	ENST00000340932	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000340932	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000340932	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000340932	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-intron	ENST00000340932	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000245222	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000245222	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000245222	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000245222	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5CDS-intron	ENST00000245222	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000601712	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000601712	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000601712	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-3CDS	ENST00000601712	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5UTR-intron	ENST00000601712	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000600537	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000600537	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000600537	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000600537	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5CDS-intron	ENST00000600537	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000598088	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000598088	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000598088	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000598088	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
5CDS-intron	ENST00000598088	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599033	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599033	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599033	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599033	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-intron	ENST00000599033	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599748	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599748	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599748	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599748	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-intron	ENST00000599748	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000443164	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000443164	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000443164	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000443164	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-intron	ENST00000443164	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599029	ENST00000377280		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599029	ENST00000596965		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599029	ENST00000356213		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-3CDS	ENST00000599029	ENST00000597853		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
intron-intron	ENST00000599029	ENST00000593309		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	SPHK2	chr19	49123810	+	CGB7	chr19	49558265	-
In-frame	ENST00000283206	ENST00000295408		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000421804		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000409780		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000264818	ENST00000222005		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
intron-3CDS	ENST00000524462	ENST00000222005		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
Frame-shit	ENST00000525621	ENST00000222005		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
Frame-shit	ENST00000529370	ENST00000222005		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
intron-3CDS	ENST00000529422	ENST00000222005		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
intron-3CDS	ENST00000286448	ENST00000366930		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000286448	ENST00000366929		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-intron	ENST00000286448	ENST00000479322		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000479687	ENST00000366930		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000479687	ENST00000366929		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-intron	ENST00000479687	ENST00000479322		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000262640	ENST00000366930		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000262640	ENST00000366929		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-intron	ENST00000262640	ENST00000479322		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000460621	ENST00000366930		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-3CDS	ENST00000460621	ENST00000366929		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
intron-intron	ENST00000460621	ENST00000479322		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	VAMP7	chrX	155130251	+	TGFB2	chr1	218578511	+
5CDS-5UTR	ENST00000261167	ENST00000539261		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	WBP11	chr12	14946665	-	MGP	chr12	15038784	-
5CDS-5UTR	ENST00000261167	ENST00000228938		TCGA	LD	BRCA	TCGA-A2-A0D0-01A	WBP11	chr12	14946665	-	MGP	chr12	15038784	-
5CDS-intron	ENST00000349699	ENST00000570618		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000349699	ENST00000434041		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000349699	ENST00000575698		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000349699	ENST00000575960		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000349699	ENST00000571246		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000349699	ENST00000450673		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000394367	ENST00000570618		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000394367	ENST00000434041		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000394367	ENST00000575698		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000394367	ENST00000575960		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000394367	ENST00000571246		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-intron	ENST00000394367	ENST00000450673		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	DDX52	chr17	35993318	-	ARL17B	chr17	44417140	-
5CDS-3UTR	ENST00000580825	ENST00000583215		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
5CDS-3UTR	ENST00000580825	ENST00000323372		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000254079	ENST00000583215		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000254079	ENST00000323372		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000579000	ENST00000583215		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000579000	ENST00000323372		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000394265	ENST00000583215		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000394265	ENST00000323372		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000394267	ENST00000583215		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
3UTR-3UTR	ENST00000394267	ENST00000323372		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	PPP1R1B	chr17	37792257	+	PIPOX	chr17	27379938	+
Frame-shit	ENST00000254066	ENST00000540200		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
5CDS-5UTR	ENST00000254066	ENST00000003607		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
Frame-shit	ENST00000394089	ENST00000540200		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
5CDS-5UTR	ENST00000394089	ENST00000003607		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
Frame-shit	ENST00000425707	ENST00000540200		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
5CDS-5UTR	ENST00000425707	ENST00000003607		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-3CDS	ENST00000394086	ENST00000540200		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-5UTR	ENST00000394086	ENST00000003607		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-3CDS	ENST00000394081	ENST00000540200		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-5UTR	ENST00000394081	ENST00000003607		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-3CDS	ENST00000420042	ENST00000540200		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-5UTR	ENST00000420042	ENST00000003607		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	RARA	chr17	38487648	+	POLDIP2	chr17	26681611	-
intron-intron	ENST00000419821	ENST00000539409		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000419821	ENST00000337682		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000419821	ENST00000454658		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000419821	ENST00000395766		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000419821	ENST00000542983		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000419821	ENST00000536836		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
5UTR-intron	ENST00000392533	ENST00000539409		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
5UTR-5UTR	ENST00000392533	ENST00000337682		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
5UTR-5UTR	ENST00000392533	ENST00000454658		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
5UTR-5UTR	ENST00000392533	ENST00000395766		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
5UTR-intron	ENST00000392533	ENST00000542983		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
5UTR-intron	ENST00000392533	ENST00000536836		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000537952	ENST00000539409		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000537952	ENST00000337682		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000537952	ENST00000454658		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000537952	ENST00000395766		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000537952	ENST00000542983		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000537952	ENST00000536836		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000543709	ENST00000539409		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000543709	ENST00000337682		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000543709	ENST00000454658		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000543709	ENST00000395766		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000543709	ENST00000542983		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000543709	ENST00000536836		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000536979	ENST00000539409		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000536979	ENST00000337682		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000536979	ENST00000454658		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000536979	ENST00000395766		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000536979	ENST00000542983		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000536979	ENST00000536836		TCGA	LD	BRCA	TCGA-A2-A0D1-01A	TAOK3	chr12	118810453	-	FAM60A	chr12	31451158	-
Frame-shit	ENST00000322989	ENST00000304414		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
5CDS-5UTR	ENST00000322989	ENST00000546206		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
5CDS-5UTR	ENST00000322989	ENST00000562819		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
Frame-shit	ENST00000563390	ENST00000304414		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
5CDS-5UTR	ENST00000563390	ENST00000546206		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
5CDS-5UTR	ENST00000563390	ENST00000562819		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-3CDS	ENST00000575669	ENST00000304414		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-5UTR	ENST00000575669	ENST00000546206		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-5UTR	ENST00000575669	ENST00000562819		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-3CDS	ENST00000576436	ENST00000304414		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-5UTR	ENST00000576436	ENST00000546206		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-5UTR	ENST00000576436	ENST00000562819		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
Frame-shit	ENST00000565420	ENST00000304414		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
5CDS-5UTR	ENST00000565420	ENST00000546206		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
5CDS-5UTR	ENST00000565420	ENST00000562819		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-3CDS	ENST00000569083	ENST00000304414		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-5UTR	ENST00000569083	ENST00000546206		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
intron-5UTR	ENST00000569083	ENST00000562819		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	RPS15A	chr16	18796060	-	ARL6IP1	chr16	18810156	-
Frame-shit	ENST00000566339	ENST00000412554		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
In-frame	ENST00000566339	ENST00000452149		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-5UTR	ENST00000566339	ENST00000470044		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-5UTR	ENST00000566339	ENST00000325962		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-5UTR	ENST00000566339	ENST00000397344		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-intron	ENST00000566339	ENST00000563416		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
Frame-shit	ENST00000301717	ENST00000412554		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
Frame-shit	ENST00000301717	ENST00000452149		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-5UTR	ENST00000301717	ENST00000470044		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-5UTR	ENST00000301717	ENST00000325962		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-5UTR	ENST00000301717	ENST00000397344		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
5CDS-intron	ENST00000301717	ENST00000563416		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SPSB3	chr16	1831359	-	MEIOB	chr16	1912117	-
Frame-shit	ENST00000215917	ENST00000449682		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SRRD	chr22	26882029	+	MST1	chr3	49722089	-
5CDS-intron	ENST00000215917	ENST00000383728		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SRRD	chr22	26882029	+	MST1	chr3	49722089	-
5CDS-intron	ENST00000215917	ENST00000545762		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SRRD	chr22	26882029	+	MST1	chr3	49722089	-
5CDS-intron	ENST00000215917	ENST00000494828		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	SRRD	chr22	26882029	+	MST1	chr3	49722089	-
intron-3UTR	ENST00000373129	ENST00000367182		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373129	ENST00000463049		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373129	ENST00000507825		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373129	ENST00000454264		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373129	ENST00000367183		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373129	ENST00000367180		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373129	ENST00000391947		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-3UTR	ENST00000373130	ENST00000367182		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373130	ENST00000463049		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373130	ENST00000507825		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373130	ENST00000454264		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373130	ENST00000367183		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373130	ENST00000367180		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373130	ENST00000391947		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-3UTR	ENST00000373132	ENST00000367182		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373132	ENST00000463049		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373132	ENST00000507825		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373132	ENST00000454264		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373132	ENST00000367183		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373132	ENST00000367180		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000373132	ENST00000391947		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-3UTR	ENST00000482458	ENST00000367182		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000482458	ENST00000463049		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000482458	ENST00000507825		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000482458	ENST00000454264		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000482458	ENST00000367183		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000482458	ENST00000367180		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000482458	ENST00000391947		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-3UTR	ENST00000359297	ENST00000367182		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000359297	ENST00000463049		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000359297	ENST00000507825		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000359297	ENST00000454264		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000359297	ENST00000367183		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000359297	ENST00000367180		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
intron-intron	ENST00000359297	ENST00000391947		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	STK40	chr1	36806700	-	MDM4	chr1	204525776	+
In-frame	ENST00000366514	ENST00000541742		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
In-frame	ENST00000366514	ENST00000490107		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
In-frame	ENST00000366514	ENST00000388985		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000366514	ENST00000366517		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000366514	ENST00000403792		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
3UTR-3CDS	ENST00000544618	ENST00000541742		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
3UTR-3CDS	ENST00000544618	ENST00000490107		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
3UTR-3CDS	ENST00000544618	ENST00000388985		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
3UTR-intron	ENST00000544618	ENST00000366517		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
3UTR-intron	ENST00000544618	ENST00000403792		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246498776	-
In-frame	ENST00000310380	ENST00000326793		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
5CDS-intron	ENST00000310380	ENST00000472860		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
Frame-shit	ENST00000437101	ENST00000326793		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
5CDS-intron	ENST00000437101	ENST00000472860		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
In-frame	ENST00000429994	ENST00000326793		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
5CDS-intron	ENST00000429994	ENST00000472860		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
In-frame	ENST00000355729	ENST00000326793		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
5CDS-intron	ENST00000355729	ENST00000472860		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
intron-3CDS	ENST00000460582	ENST00000326793		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
intron-intron	ENST00000460582	ENST00000472860		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
intron-3CDS	ENST00000356740	ENST00000326793		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
intron-intron	ENST00000356740	ENST00000472860		TCGA	LD	BRCA	TCGA-A2-A0D2-01A	XXYLT1	chr3	194877178	-	ACAP2	chr3	195112876	-
3UTR-intron	ENST00000249064	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
3UTR-intron	ENST00000249064	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
3UTR-intron	ENST00000249064	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000448492	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000448492	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000448492	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000421503	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000421503	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000421503	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000443309	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000443309	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
intron-intron	ENST00000443309	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	CCDC117	chr22	29184969	+	CPB1	chr3	148572252	+
3UTR-3CDS	ENST00000267101	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
3UTR-3CDS	ENST00000267101	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
3UTR-intron	ENST00000267101	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000450146	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000450146	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-intron	ENST00000450146	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000415288	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000415288	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-intron	ENST00000415288	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000553131	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000553131	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-intron	ENST00000553131	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000411731	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-3CDS	ENST00000411731	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
intron-intron	ENST00000411731	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
3UTR-3CDS	ENST00000549832	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
3UTR-3CDS	ENST00000549832	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
3UTR-intron	ENST00000549832	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	ERBB3	chr12	56496618	+	CPB1	chr3	148559617	+
In-frame	ENST00000319023	ENST00000298355		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
In-frame	ENST00000319023	ENST00000338969		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
In-frame	ENST00000319023	ENST00000360392		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
5CDS-intron	ENST00000319023	ENST00000557456		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
In-frame	ENST00000539574	ENST00000298355		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
In-frame	ENST00000539574	ENST00000338969		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
In-frame	ENST00000539574	ENST00000360392		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
5CDS-intron	ENST00000539574	ENST00000557456		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000530055	ENST00000298355		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000530055	ENST00000338969		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000530055	ENST00000360392		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-intron	ENST00000530055	ENST00000557456		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000526039	ENST00000298355		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000526039	ENST00000338969		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000526039	ENST00000360392		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-intron	ENST00000526039	ENST00000557456		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	NADSYN1	chr11	71189515	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000254066	ENST00000573500		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000576221		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000268896		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000576183		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000254066	ENST00000325214		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-3CDS	ENST00000394089	ENST00000573500		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000576221		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000268896		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000576183		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000394089	ENST00000325214		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-3CDS	ENST00000425707	ENST00000573500		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000576221		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000268896		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000576183		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5UTR-intron	ENST00000425707	ENST00000325214		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-3CDS	ENST00000394086	ENST00000573500		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000576221		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000268896		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000576183		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394086	ENST00000325214		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-3CDS	ENST00000394081	ENST00000573500		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000576221		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000268896		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000576183		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000394081	ENST00000325214		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-3CDS	ENST00000420042	ENST00000573500		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000576221		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000268896		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000576183		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
intron-intron	ENST00000420042	ENST00000325214		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	RARA	chr17	38474700	+	PCTP	chr17	53848467	+
5CDS-5UTR	ENST00000340353	ENST00000532481		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000527134		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000304716		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000526415		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-intron	ENST00000340353	ENST00000531855		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000393427		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000525409		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000533193		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000340353	ENST00000525034		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000532481		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000527134		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000304716		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000526415		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-intron	ENST00000532959	ENST00000531855		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000393427		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000525409		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000533193		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000532959	ENST00000525034		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000532481		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000527134		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000304716		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000526415		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-intron	ENST00000305494	ENST00000531855		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000393427		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000525409		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000533193		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000305494	ENST00000525034		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000532481		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000527134		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000304716		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000526415		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-intron	ENST00000535167	ENST00000531855		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000393427		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000525409		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000533193		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000535167	ENST00000525034		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000532481		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000527134		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000304716		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000526415		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-intron	ENST00000355734	ENST00000531855		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000393427		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000525409		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000533193		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000355734	ENST00000525034		TCGA	LD	BRCA	TCGA-A2-A0D4-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77553525	+
intron-3CDS	ENST00000253401	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000253401	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000374878	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000374878	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
5UTR-3CDS	ENST00000374870	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
5UTR-3CDS	ENST00000374870	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000437457	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000437457	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000495564	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000495564	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
5UTR-3CDS	ENST00000374872	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
5UTR-3CDS	ENST00000374872	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000433323	ENST00000273986		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000433323	ENST00000503643		TCGA	LD	BRCA	TCGA-A2-A0EM-01A	ARHGEF9	chrX	62974195	-	CISD2	chr4	103806373	+
5CDS-intron	ENST00000532485	ENST00000397002		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000532485	ENST00000561028		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000532485	ENST00000396997		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000532485	ENST00000560550		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000532485	ENST00000396995		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
3UTR-intron	ENST00000530182	ENST00000397002		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
3UTR-intron	ENST00000530182	ENST00000561028		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
3UTR-intron	ENST00000530182	ENST00000396997		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
3UTR-intron	ENST00000530182	ENST00000560550		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
3UTR-intron	ENST00000530182	ENST00000396995		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000526597	ENST00000397002		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000526597	ENST00000561028		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000526597	ENST00000396997		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000526597	ENST00000560550		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000526597	ENST00000396995		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000533873	ENST00000397002		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000533873	ENST00000561028		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000533873	ENST00000396997		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000533873	ENST00000560550		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5CDS-intron	ENST00000533873	ENST00000396995		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5UTR-intron	ENST00000538157	ENST00000397002		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5UTR-intron	ENST00000538157	ENST00000561028		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5UTR-intron	ENST00000538157	ENST00000396997		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5UTR-intron	ENST00000538157	ENST00000560550		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
5UTR-intron	ENST00000538157	ENST00000396995		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000544113	ENST00000397002		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000544113	ENST00000561028		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000544113	ENST00000396997		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000544113	ENST00000560550		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
intron-intron	ENST00000544113	ENST00000396995		TCGA	LD	BRCA	TCGA-A2-A0EQ-01A	ACER3	chr11	76572123	+	NRL	chr14	24553954	-
In-frame	ENST00000316084	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
In-frame	ENST00000316084	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
5CDS-intron	ENST00000316084	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
intron-3CDS	ENST00000486733	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
intron-3CDS	ENST00000486733	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
intron-intron	ENST00000486733	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
In-frame	ENST00000373626	ENST00000491148		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
In-frame	ENST00000373626	ENST00000282957		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
5CDS-intron	ENST00000373626	ENST00000498639		TCGA	LD	BRCA	TCGA-A2-A0ER-01A	RPS4X	chrX	71494903	-	CPB1	chr3	148562464	+
In-frame	ENST00000524189	ENST00000278550		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	KIF13B	chr8	28980108	-	TENM4	chr11	78387432	-
5CDS-intron	ENST00000524189	ENST00000533038		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	KIF13B	chr8	28980108	-	TENM4	chr11	78387432	-
intron-3CDS	ENST00000521515	ENST00000278550		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	KIF13B	chr8	28980108	-	TENM4	chr11	78387432	-
intron-intron	ENST00000521515	ENST00000533038		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	KIF13B	chr8	28980108	-	TENM4	chr11	78387432	-
intron-3CDS	ENST00000404075	ENST00000278550		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	KIF13B	chr8	28980108	-	TENM4	chr11	78387432	-
intron-intron	ENST00000404075	ENST00000533038		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	KIF13B	chr8	28980108	-	TENM4	chr11	78387432	-
5CDS-intron	ENST00000261681	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000261681	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000261681	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-3UTR	ENST00000261681	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000261681	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000261681	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000555925	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000555925	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000555925	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-3UTR	ENST00000555925	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000555925	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000555925	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000554911	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000554911	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000554911	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-3UTR	ENST00000554911	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000554911	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000554911	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000556345	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000556345	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000556345	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-3UTR	ENST00000556345	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000556345	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-intron	ENST00000556345	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	MPP5	chr14	67779427	+	RAD51B	chr14	69196525	+
intron-3CDS	ENST00000250559	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000250559	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000250559	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000393436	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000393436	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000393436	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000341355	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000341355	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000341355	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
5UTR-3CDS	ENST00000537460	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
5UTR-3CDS	ENST00000537460	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
5UTR-intron	ENST00000537460	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000463493	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000463493	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000463493	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000450214	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000450214	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000450214	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000543393	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000543393	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000543393	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000378985	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000378985	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000378985	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000540209	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000540209	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000540209	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000539091	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000539091	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000539091	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000542145	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000542145	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000542145	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000543697	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000543697	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000543697	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000541216	ENST00000378695		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-3CDS	ENST00000541216	ENST00000312442		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
intron-intron	ENST00000541216	ENST00000548623		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	RAP1B	chr12	69018653	+	GLIPR1L1	chr12	75737473	+
In-frame	ENST00000356136	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000356136	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000356136	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000528420	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000528420	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000528420	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000533454	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000533454	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000533454	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000531818	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000531818	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000531818	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000532130	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000532130	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000532130	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
In-frame	ENST00000539288	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000539288	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000539288	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000525872	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000525872	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
intron-intron	ENST00000525872	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000538870	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000538870	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
intron-intron	ENST00000538870	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0ES-01A	UVRAG	chr11	75728024	+	ZMAT4	chr8	40389757	-
5CDS-intron	ENST00000439040	ENST00000439944		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	ATP13A3	chr3	194146071	-	LRRC15	chr3	194084141	-
5CDS-intron	ENST00000439040	ENST00000347624		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	ATP13A3	chr3	194146071	-	LRRC15	chr3	194084141	-
5CDS-5UTR	ENST00000439040	ENST00000428839		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	ATP13A3	chr3	194146071	-	LRRC15	chr3	194084141	-
5CDS-intron	ENST00000256031	ENST00000439944		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	ATP13A3	chr3	194146071	-	LRRC15	chr3	194084141	-
5CDS-intron	ENST00000256031	ENST00000347624		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	ATP13A3	chr3	194146071	-	LRRC15	chr3	194084141	-
5CDS-5UTR	ENST00000256031	ENST00000428839		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	ATP13A3	chr3	194146071	-	LRRC15	chr3	194084141	-
In-frame	ENST00000380152	ENST00000380314		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	BRCA2	chr13	32945237	+	RXFP2	chr13	32332395	+
In-frame	ENST00000380152	ENST00000298386		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	BRCA2	chr13	32945237	+	RXFP2	chr13	32332395	+
In-frame	ENST00000544455	ENST00000380314		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	BRCA2	chr13	32945237	+	RXFP2	chr13	32332395	+
In-frame	ENST00000544455	ENST00000298386		TCGA	LD	BRCA	TCGA-A2-A0ET-01A	BRCA2	chr13	32945237	+	RXFP2	chr13	32332395	+
5CDS-intron	ENST00000373996	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
5CDS-intron	ENST00000313400	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
5CDS-intron	ENST00000361209	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
5UTR-intron	ENST00000361477	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
intron-intron	ENST00000288520	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
intron-intron	ENST00000341734	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
intron-intron	ENST00000358637	ENST00000374304		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	ASTN2	chr9	119802098	-	LRRC37A5P	chr9	114365393	-
5CDS-5UTR	ENST00000302279	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000302279	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000302279	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000342116	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000342116	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000342116	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
intron-5UTR	ENST00000524546	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
intron-5UTR	ENST00000524546	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
intron-5UTR	ENST00000524546	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000529687	ENST00000315769		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000529687	ENST00000297737		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
5CDS-5UTR	ENST00000529687	ENST00000523823		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	FNTA	chr8	42932507	+	ZMAT4	chr8	40683199	-
In-frame	ENST00000307602	ENST00000456845		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
In-frame	ENST00000307602	ENST00000412303		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
In-frame	ENST00000307602	ENST00000456397		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
In-frame	ENST00000307602	ENST00000397070		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
5CDS-5UTR	ENST00000307602	ENST00000522434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
intron-3CDS	ENST00000524839	ENST00000456845		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
intron-3CDS	ENST00000524839	ENST00000412303		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
intron-3CDS	ENST00000524839	ENST00000456397		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
intron-3CDS	ENST00000524839	ENST00000397070		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
intron-5UTR	ENST00000524839	ENST00000522434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HOOK3	chr8	42752331	+	TM2D2	chr8	38851179	-
Frame-shit	ENST00000398805	ENST00000376438		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
Frame-shit	ENST00000398805	ENST00000304195		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5CDS-intron	ENST00000398805	ENST00000328788		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5CDS-intron	ENST00000398805	ENST00000376434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5CDS-intron	ENST00000398805	ENST00000465485		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
Frame-shit	ENST00000398803	ENST00000376438		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
Frame-shit	ENST00000398803	ENST00000304195		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5CDS-intron	ENST00000398803	ENST00000328788		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5CDS-intron	ENST00000398803	ENST00000376434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5CDS-intron	ENST00000398803	ENST00000465485		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
3UTR-3CDS	ENST00000488101	ENST00000376438		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
3UTR-3CDS	ENST00000488101	ENST00000304195		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
3UTR-intron	ENST00000488101	ENST00000328788		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
3UTR-intron	ENST00000488101	ENST00000376434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
3UTR-intron	ENST00000488101	ENST00000465485		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-3CDS	ENST00000262542	ENST00000376438		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-3CDS	ENST00000262542	ENST00000304195		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-intron	ENST00000262542	ENST00000328788		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-intron	ENST00000262542	ENST00000376434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-intron	ENST00000262542	ENST00000465485		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-3CDS	ENST00000539114	ENST00000376438		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-3CDS	ENST00000539114	ENST00000304195		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-intron	ENST00000539114	ENST00000328788		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-intron	ENST00000539114	ENST00000376434		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
5UTR-intron	ENST00000539114	ENST00000465485		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	HSDL2	chr9	115142460	+	FRMD3	chr9	86004623	-
In-frame	ENST00000453658	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000453658	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000377259	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000377259	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000377245	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000377245	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000348208	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000348208	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000265384	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000265384	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000535702	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000535702	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000539225	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
In-frame	ENST00000539225	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000498204	ENST00000374692		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000498204	ENST00000374688		TCGA	LD	BRCA	TCGA-A2-A0EW-01A	TJP2	chr9	71845148	+	TMEM38B	chr9	108536146	+
5UTR-intron	ENST00000395715	ENST00000408388		TCGA	LD	BRCA	TCGA-A2-A0EX-01A	TRPS1	chr8	116680772	-	PVT1	chr8	129108764	+
5UTR-intron	ENST00000220888	ENST00000408388		TCGA	LD	BRCA	TCGA-A2-A0EX-01A	TRPS1	chr8	116680772	-	PVT1	chr8	129108764	+
intron-intron	ENST00000519076	ENST00000408388		TCGA	LD	BRCA	TCGA-A2-A0EX-01A	TRPS1	chr8	116680772	-	PVT1	chr8	129108764	+
intron-intron	ENST00000520276	ENST00000408388		TCGA	LD	BRCA	TCGA-A2-A0EX-01A	TRPS1	chr8	116680772	-	PVT1	chr8	129108764	+
5UTR-intron	ENST00000519674	ENST00000408388		TCGA	LD	BRCA	TCGA-A2-A0EX-01A	TRPS1	chr8	116680772	-	PVT1	chr8	129108764	+
Frame-shit	ENST00000588427	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000588427	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000436106	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000436106	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000588871	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000588871	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
intron-3CDS	ENST00000427685	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
intron-3CDS	ENST00000427685	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000588849	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000588849	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000586564	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000586564	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000592872	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
Frame-shit	ENST00000592872	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
In-frame	ENST00000585675	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
In-frame	ENST00000585675	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
5UTR-3CDS	ENST00000591027	ENST00000394287		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
5UTR-3CDS	ENST00000591027	ENST00000300651		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	C19orf25	chr19	1478773	-	MED1	chr17	37604157	-
In-frame	ENST00000565858	ENST00000219343		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	ESRP2	chr16	68265081	-	SLC7A6	chr16	68321649	+
In-frame	ENST00000565858	ENST00000566454		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	ESRP2	chr16	68265081	-	SLC7A6	chr16	68321649	+
In-frame	ENST00000473183	ENST00000219343		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	ESRP2	chr16	68265081	-	SLC7A6	chr16	68321649	+
In-frame	ENST00000473183	ENST00000566454		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	ESRP2	chr16	68265081	-	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000583610	ENST00000535342		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000583610	ENST00000392769		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000583610	ENST00000541355		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000583610	ENST00000537949		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-intron	ENST00000583610	ENST00000317442		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-intron	ENST00000583610	ENST00000580482		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000394294	ENST00000535342		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000394294	ENST00000392769		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000394294	ENST00000541355		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000394294	ENST00000537949		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-intron	ENST00000394294	ENST00000317442		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-intron	ENST00000394294	ENST00000580482		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000264658	ENST00000535342		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000264658	ENST00000392769		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000264658	ENST00000541355		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-3CDS	ENST00000264658	ENST00000537949		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-intron	ENST00000264658	ENST00000317442		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
intron-intron	ENST00000264658	ENST00000580482		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
In-frame	ENST00000577399	ENST00000535342		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
In-frame	ENST00000577399	ENST00000392769		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
In-frame	ENST00000577399	ENST00000541355		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
In-frame	ENST00000577399	ENST00000537949		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
5CDS-intron	ENST00000577399	ENST00000317442		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
5CDS-intron	ENST00000577399	ENST00000580482		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37558426	-	CEP112	chr17	64026141	-
Frame-shit	ENST00000583610	ENST00000601488		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000583610	ENST00000305232		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000583610	ENST00000337491		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000583610	ENST00000381935		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000583610	ENST00000594279		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000394294	ENST00000601488		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000394294	ENST00000305232		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000394294	ENST00000337491		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000394294	ENST00000381935		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000394294	ENST00000594279		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000264658	ENST00000601488		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000264658	ENST00000305232		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000264658	ENST00000337491		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000264658	ENST00000381935		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000264658	ENST00000594279		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
intron-3CDS	ENST00000577399	ENST00000601488		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
intron-3CDS	ENST00000577399	ENST00000305232		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
intron-3CDS	ENST00000577399	ENST00000337491		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
intron-3CDS	ENST00000577399	ENST00000381935		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
intron-3CDS	ENST00000577399	ENST00000594279		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	FBXL20	chr17	37557614	-	SIRT6	chr19	4175934	-
Frame-shit	ENST00000321662	ENST00000395631		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	GPR137C	chr14	53020309	+	FERMT2	chr14	53331571	-
Frame-shit	ENST00000321662	ENST00000341590		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	GPR137C	chr14	53020309	+	FERMT2	chr14	53331571	-
Frame-shit	ENST00000321662	ENST00000343279		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	GPR137C	chr14	53020309	+	FERMT2	chr14	53331571	-
Frame-shit	ENST00000321662	ENST00000553373		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	GPR137C	chr14	53020309	+	FERMT2	chr14	53331571	-
Frame-shit	ENST00000321662	ENST00000399304		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	GPR137C	chr14	53020309	+	FERMT2	chr14	53331571	-
5CDS-intron	ENST00000321662	ENST00000557255		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	GPR137C	chr14	53020309	+	FERMT2	chr14	53331571	-
Frame-shit	ENST00000261699	ENST00000370577		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000261699	ENST00000370570		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000267436	ENST00000370577		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000267436	ENST00000370570		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000421284	ENST00000370577		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000421284	ENST00000370570		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000555423	ENST00000370577		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000555423	ENST00000370570		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000555610	ENST00000370577		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000555610	ENST00000370570		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
intron-3CDS	ENST00000556393	ENST00000370577		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
intron-3CDS	ENST00000556393	ENST00000370570		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	L2HGDH	chr14	50760833	-	LMBRD1	chr6	70386433	-
5UTR-5UTR	ENST00000395468	ENST00000298316		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	MAPK1IP1L	chr14	55518521	+	ARF6	chr14	50359974	+
3UTR-5UTR	ENST00000554364	ENST00000298316		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	MAPK1IP1L	chr14	55518521	+	ARF6	chr14	50359974	+
5CDS-intron	ENST00000394287	ENST00000332578		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	MED1	chr17	37607291	-	TMPRSS9	chr19	2398793	+
5CDS-3UTR	ENST00000394287	ENST00000592650		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	MED1	chr17	37607291	-	TMPRSS9	chr19	2398793	+
5CDS-intron	ENST00000300651	ENST00000332578		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	MED1	chr17	37607291	-	TMPRSS9	chr19	2398793	+
5CDS-3UTR	ENST00000300651	ENST00000592650		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	MED1	chr17	37607291	-	TMPRSS9	chr19	2398793	+
In-frame	ENST00000389467	ENST00000537978		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
In-frame	ENST00000389467	ENST00000525139		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
In-frame	ENST00000389467	ENST00000256737		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
5CDS-intron	ENST00000389467	ENST00000531646		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
5CDS-intron	ENST00000389467	ENST00000531568		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
5CDS-intron	ENST00000389467	ENST00000529242		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
In-frame	ENST00000446231	ENST00000537978		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
In-frame	ENST00000446231	ENST00000525139		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
In-frame	ENST00000446231	ENST00000256737		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
5CDS-intron	ENST00000446231	ENST00000531646		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
5CDS-intron	ENST00000446231	ENST00000531568		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
5CDS-intron	ENST00000446231	ENST00000529242		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000565224	ENST00000537978		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000565224	ENST00000525139		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000565224	ENST00000256737		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-intron	ENST00000565224	ENST00000531646		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-intron	ENST00000565224	ENST00000531568		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-intron	ENST00000565224	ENST00000529242		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000567737	ENST00000537978		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000567737	ENST00000525139		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000567737	ENST00000256737		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-intron	ENST00000567737	ENST00000531646		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-intron	ENST00000567737	ENST00000531568		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-intron	ENST00000567737	ENST00000529242		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SMG1	chr16	18869492	-	ANO3	chr11	26669256	+
intron-3CDS	ENST00000472876	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000472876	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000395527	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000395527	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000395529	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000395529	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000261503	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000261503	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
In-frame	ENST00000395530	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000395530	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
5UTR-3CDS	ENST00000536879	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
5UTR-5UTR	ENST00000536879	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
In-frame	ENST00000395522	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000395522	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
In-frame	ENST00000395525	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000395525	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000584527	ENST00000317635		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000584527	ENST00000584432		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	SPECC1	chr17	20059549	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000395715	ENST00000355235		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
Frame-shit	ENST00000395715	ENST00000356834		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000395715	ENST00000518085		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000395715	ENST00000519746		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000395715	ENST00000444477		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
Frame-shit	ENST00000220888	ENST00000355235		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
Frame-shit	ENST00000220888	ENST00000356834		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000220888	ENST00000518085		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000220888	ENST00000519746		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000220888	ENST00000444477		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
In-frame	ENST00000519076	ENST00000355235		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
In-frame	ENST00000519076	ENST00000356834		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000519076	ENST00000518085		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000519076	ENST00000519746		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000519076	ENST00000444477		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
In-frame	ENST00000520276	ENST00000355235		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
In-frame	ENST00000520276	ENST00000356834		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000520276	ENST00000518085		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000520276	ENST00000519746		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000520276	ENST00000444477		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
Frame-shit	ENST00000519674	ENST00000355235		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
Frame-shit	ENST00000519674	ENST00000356834		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000519674	ENST00000518085		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000519674	ENST00000519746		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5CDS-intron	ENST00000519674	ENST00000444477		TCGA	LD	BRCA	TCGA-A2-A0EY-01A	TRPS1	chr8	116599228	-	TBC1D9B	chr5	179321614	-
5UTR-3CDS	ENST00000536363	ENST00000269703		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
5UTR-3CDS	ENST00000536363	ENST00000601005		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
Frame-shit	ENST00000540689	ENST00000269703		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
Frame-shit	ENST00000540689	ENST00000601005		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
intron-3CDS	ENST00000601134	ENST00000269703		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
intron-3CDS	ENST00000601134	ENST00000601005		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
3UTR-3CDS	ENST00000601629	ENST00000269703		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
3UTR-3CDS	ENST00000601629	ENST00000601005		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
Frame-shit	ENST00000292530	ENST00000269703		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
Frame-shit	ENST00000292530	ENST00000601005		TCGA	LD	BRCA	TCGA-A2-A0ST-01A	ZNF333	chr19	14806473	+	CYP4F22	chr19	15640520	+
5CDS-5UTR	ENST00000268182	ENST00000441037		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
5CDS-intron	ENST00000268182	ENST00000421325		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
5CDS-intron	ENST00000268182	ENST00000389298		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-5UTR	ENST00000560738	ENST00000441037		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-intron	ENST00000560738	ENST00000421325		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-intron	ENST00000560738	ENST00000389298		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-5UTR	ENST00000560020	ENST00000441037		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-intron	ENST00000560020	ENST00000421325		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-intron	ENST00000560020	ENST00000389298		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	IQGAP1	chr15	90934105	+	AGBL1	chr15	86685235	+
intron-3CDS	ENST00000561311	ENST00000267843		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-intron	ENST00000561311	ENST00000560270		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3UTR	ENST00000561311	ENST00000560704		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3CDS	ENST00000306829	ENST00000267843		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-intron	ENST00000306829	ENST00000560270		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3UTR	ENST00000306829	ENST00000560704		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3CDS	ENST00000559908	ENST00000267843		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-intron	ENST00000559908	ENST00000560270		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3UTR	ENST00000559908	ENST00000560704		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3CDS	ENST00000472902	ENST00000267843		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-intron	ENST00000472902	ENST00000560270		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
intron-3UTR	ENST00000472902	ENST00000560704		TCGA	LD	BRCA	TCGA-A2-A0SU-01A	TLN2	chr15	62682884	+	FGF7	chr15	49775348	+
5CDS-5UTR	ENST00000287996	ENST00000375543		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000287996	ENST00000375544		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000287996	ENST00000395538		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000287996	ENST00000450139		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000486841	ENST00000375543		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000486841	ENST00000375544		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000486841	ENST00000395538		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000486841	ENST00000450139		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375522	ENST00000375543		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375522	ENST00000375544		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375522	ENST00000395538		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375522	ENST00000450139		TCGA	LD	BRCA	TCGA-A2-A0SW-01A	IPPK	chr9	95396668	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000334256	ENST00000543469		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	KPNA4	chr3	160239567	-	TRIM59	chr3	160156974	-
5CDS-5UTR	ENST00000334256	ENST00000309784		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	KPNA4	chr3	160239567	-	TRIM59	chr3	160156974	-
intron-5UTR	ENST00000469804	ENST00000543469		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	KPNA4	chr3	160239567	-	TRIM59	chr3	160156974	-
intron-5UTR	ENST00000469804	ENST00000309784		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	KPNA4	chr3	160239567	-	TRIM59	chr3	160156974	-
5CDS-5UTR	ENST00000319264	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000319264	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000319264	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000319264	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
3UTR-5UTR	ENST00000489107	ENST00000381137		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
3UTR-5UTR	ENST00000489107	ENST00000388918		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
3UTR-intron	ENST00000489107	ENST00000381136		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
3UTR-intron	ENST00000489107	ENST00000473504		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	LURAP1L	chr9	12776026	+	TYRP1	chr9	12693912	+
Frame-shit	ENST00000509479	ENST00000414773		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
Frame-shit	ENST00000509479	ENST00000325617		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
Frame-shit	ENST00000509479	ENST00000537281		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
intron-3CDS	ENST00000327122	ENST00000414773		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
intron-3CDS	ENST00000327122	ENST00000325617		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
intron-3CDS	ENST00000327122	ENST00000537281		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
intron-3CDS	ENST00000398940	ENST00000414773		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
intron-3CDS	ENST00000398940	ENST00000325617		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
intron-3CDS	ENST00000398940	ENST00000537281		TCGA	LD	BRCA	TCGA-A2-A0SX-01A	MAML3	chr4	141074014	-	CLGN	chr4	141320194	-
5CDS-3UTR	ENST00000570565	ENST00000591658		TCGA	LD	BRCA	TCGA-A2-A0SY-01A	CA10	chr17	50008350	-	TTC25	chr17	40101390	+
5CDS-3UTR	ENST00000442502	ENST00000591658		TCGA	LD	BRCA	TCGA-A2-A0SY-01A	CA10	chr17	50008350	-	TTC25	chr17	40101390	+
5CDS-3UTR	ENST00000340813	ENST00000591658		TCGA	LD	BRCA	TCGA-A2-A0SY-01A	CA10	chr17	50008350	-	TTC25	chr17	40101390	+
5CDS-3UTR	ENST00000451037	ENST00000591658		TCGA	LD	BRCA	TCGA-A2-A0SY-01A	CA10	chr17	50008350	-	TTC25	chr17	40101390	+
5CDS-3UTR	ENST00000285273	ENST00000591658		TCGA	LD	BRCA	TCGA-A2-A0SY-01A	CA10	chr17	50008350	-	TTC25	chr17	40101390	+
intron-3UTR	ENST00000571918	ENST00000591658		TCGA	LD	BRCA	TCGA-A2-A0SY-01A	CA10	chr17	50008350	-	TTC25	chr17	40101390	+
Frame-shit	ENST00000280772	ENST00000263102		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	ANK3	chr10	61894029	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000373827	ENST00000263102		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	ANK3	chr10	61894029	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000355288	ENST00000263102		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	ANK3	chr10	61894029	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000503366	ENST00000263102		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	ANK3	chr10	61894029	-	CCDC6	chr10	61612460	-
intron-3CDS	ENST00000510382	ENST00000263102		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	ANK3	chr10	61894029	-	CCDC6	chr10	61612460	-
intron-3CDS	ENST00000460468	ENST00000263102		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	ANK3	chr10	61894029	-	CCDC6	chr10	61612460	-
5UTR-3CDS	ENST00000449054	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-intron	ENST00000449054	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-3CDS	ENST00000379238	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-intron	ENST00000379238	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-3CDS	ENST00000360802	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-intron	ENST00000360802	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-3CDS	ENST00000379239	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-intron	ENST00000379239	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-3CDS	ENST00000539807	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-intron	ENST00000539807	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-3CDS	ENST00000418786	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-intron	ENST00000418786	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-3CDS	ENST00000379225	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-intron	ENST00000379225	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-3CDS	ENST00000379235	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-intron	ENST00000379235	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-3CDS	ENST00000480885	ENST00000378116		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
5UTR-intron	ENST00000480885	ENST00000477161		TCGA	LD	BRCA	TCGA-A2-A0T0-01A	UBAP2	chr9	34048823	-	FAM171A1	chr10	15326104	-
intron-3CDS	ENST00000284425	ENST00000378526		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-3CDS	ENST00000284425	ENST00000262327		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-intron	ENST00000284425	ENST00000586407		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-3CDS	ENST00000446604	ENST00000378526		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-3CDS	ENST00000446604	ENST00000262327		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-intron	ENST00000446604	ENST00000586407		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-3CDS	ENST00000590645	ENST00000378526		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-3CDS	ENST00000590645	ENST00000262327		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
intron-intron	ENST00000590645	ENST00000586407		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ABCA6	chr17	67102264	-	LIG3	chr17	33323083	+
Frame-shit	ENST00000295890	ENST00000355528		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
Frame-shit	ENST00000295890	ENST00000397466		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
Frame-shit	ENST00000295890	ENST00000539345		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
5CDS-intron	ENST00000295890	ENST00000576691		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
Frame-shit	ENST00000507544	ENST00000355528		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
Frame-shit	ENST00000507544	ENST00000397466		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
Frame-shit	ENST00000507544	ENST00000539345		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
5CDS-intron	ENST00000507544	ENST00000576691		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
intron-3CDS	ENST00000421792	ENST00000355528		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
intron-3CDS	ENST00000421792	ENST00000397466		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
intron-3CDS	ENST00000421792	ENST00000539345		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
intron-intron	ENST00000421792	ENST00000576691		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	COX18	chr4	73927530	-	TBCD	chr17	80861281	+
5CDS-5UTR	ENST00000259371	ENST00000526767		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
5CDS-intron	ENST00000259371	ENST00000530128		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
5CDS-intron	ENST00000259371	ENST00000381057		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
5CDS-5UTR	ENST00000408936	ENST00000526767		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
5CDS-intron	ENST00000408936	ENST00000530128		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
5CDS-intron	ENST00000408936	ENST00000381057		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
intron-5UTR	ENST00000309989	ENST00000526767		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
intron-intron	ENST00000309989	ENST00000530128		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
intron-intron	ENST00000309989	ENST00000381057		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
intron-5UTR	ENST00000487716	ENST00000526767		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
intron-intron	ENST00000487716	ENST00000530128		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
intron-intron	ENST00000487716	ENST00000381057		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DAB2IP	chr9	124441060	+	HTN3	chr4	70894160	+
5UTR-5UTR	ENST00000473039	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5UTR-intron	ENST00000473039	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5UTR-intron	ENST00000473039	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5UTR-intron	ENST00000473039	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-5UTR	ENST00000373624	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373624	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373624	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373624	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
intron-5UTR	ENST00000542603	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
intron-intron	ENST00000542603	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
intron-intron	ENST00000542603	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
intron-intron	ENST00000542603	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-5UTR	ENST00000394219	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000394219	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000394219	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000394219	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-5UTR	ENST00000373620	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373620	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373620	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373620	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-5UTR	ENST00000394215	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000394215	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000394215	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000394215	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-5UTR	ENST00000373618	ENST00000523719		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373618	ENST00000276609		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373618	ENST00000309536		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000373618	ENST00000520249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	DENND1A	chr9	126519982	-	SLC26A7	chr8	92231118	+
In-frame	ENST00000520367	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000520367	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000520367	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000520367	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000520367	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000520367	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000520367	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000520367	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518137	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518137	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518137	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518137	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518137	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518137	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518137	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000523999	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000323854	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000323854	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000323854	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000323854	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000323854	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000522751	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000522751	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000522751	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000520284	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517795	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517795	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517795	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517795	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517795	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517795	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517795	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518907	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000521847	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
intron-3CDS	ENST00000518644	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000518901	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518901	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518901	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518901	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518901	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518901	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000518901	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000346872		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000394189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000439167		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000535189		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000377944		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000377945		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000377952		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
In-frame	ENST00000517295	ENST00000377958		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517295	ENST00000346243		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517295	ENST00000350532		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517295	ENST00000351680		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517295	ENST00000467757		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517295	ENST00000439016		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000517295	ENST00000583368		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	ENDOV	chr17	78403631	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000320095	ENST00000580825		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000320095	ENST00000254079		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000320095	ENST00000579000		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000320095	ENST00000394265		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000320095	ENST00000394267		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000570778	ENST00000580825		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000570778	ENST00000254079		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000570778	ENST00000579000		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000570778	ENST00000394265		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000570778	ENST00000394267		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000571814	ENST00000580825		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000571814	ENST00000254079		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000571814	ENST00000579000		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000571814	ENST00000394265		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000571814	ENST00000394267		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000571940	ENST00000580825		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000571940	ENST00000254079		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000571940	ENST00000579000		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000571940	ENST00000394265		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000571940	ENST00000394267		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	METRNL	chr17	81043199	+	PPP1R1B	chr17	37785423	+
In-frame	ENST00000282516	ENST00000358602		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
In-frame	ENST00000282516	ENST00000509867		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
In-frame	ENST00000282516	ENST00000330838		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
5CDS-intron	ENST00000282516	ENST00000514252		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
In-frame	ENST00000448238	ENST00000358602		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
In-frame	ENST00000448238	ENST00000509867		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
In-frame	ENST00000448238	ENST00000330838		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
5CDS-intron	ENST00000448238	ENST00000514252		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
intron-3CDS	ENST00000504430	ENST00000358602		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
intron-3CDS	ENST00000504430	ENST00000509867		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
intron-3CDS	ENST00000504430	ENST00000330838		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
intron-intron	ENST00000504430	ENST00000514252		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	NIPBL	chr5	37010327	+	ANKRD17	chr4	74043250	-
intron-3UTR	ENST00000272645	ENST00000263707		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	POLR2D	chr2	128604637	-	TFCP2L1	chr2	121977061	-
intron-3UTR	ENST00000409955	ENST00000263707		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	POLR2D	chr2	128604637	-	TFCP2L1	chr2	121977061	-
intron-3UTR	ENST00000487079	ENST00000263707		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	POLR2D	chr2	128604637	-	TFCP2L1	chr2	121977061	-
intron-3UTR	ENST00000409698	ENST00000263707		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	POLR2D	chr2	128604637	-	TFCP2L1	chr2	121977061	-
In-frame	ENST00000409003	ENST00000317987		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SAMD12	chr8	119592954	-	FDCSP	chr4	71096912	+
In-frame	ENST00000314727	ENST00000317987		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SAMD12	chr8	119592954	-	FDCSP	chr4	71096912	+
intron-3CDS	ENST00000527515	ENST00000317987		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SAMD12	chr8	119592954	-	FDCSP	chr4	71096912	+
intron-3CDS	ENST00000264659	ENST00000538936		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000264659	ENST00000331285		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000264659	ENST00000538721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000264659	ENST00000571105		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000264659	ENST00000570391		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000264659	ENST00000570388		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
Frame-shit	ENST00000578925	ENST00000538936		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000578925	ENST00000331285		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000578925	ENST00000538721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000578925	ENST00000571105		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000578925	ENST00000570391		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000578925	ENST00000570388		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-3CDS	ENST00000398579	ENST00000538936		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000398579	ENST00000331285		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000398579	ENST00000538721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000398579	ENST00000571105		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000398579	ENST00000570391		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000398579	ENST00000570388		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	SRCIN1	chr17	36731123	-	PCYT2	chr17	79867478	-
Frame-shit	ENST00000424789	ENST00000225724		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000424789	ENST00000451249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000424789	ENST00000467337		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000424789	ENST00000581721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
5CDS-intron	ENST00000424789	ENST00000579905		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000389520	ENST00000225724		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000389520	ENST00000451249		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000389520	ENST00000467337		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
Frame-shit	ENST00000389520	ENST00000581721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
5CDS-intron	ENST00000389520	ENST00000579905		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TANC2	chr17	61315438	+	GOSR1	chr17	28846957	+
3UTR-3UTR	ENST00000571914	ENST00000538936		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
3UTR-intron	ENST00000571914	ENST00000331285		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
3UTR-intron	ENST00000571914	ENST00000538721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
3UTR-intron	ENST00000571914	ENST00000571105		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
3UTR-intron	ENST00000571914	ENST00000570391		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
3UTR-intron	ENST00000571914	ENST00000570388		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-3UTR	ENST00000328585	ENST00000538936		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000328585	ENST00000331285		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000328585	ENST00000538721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000328585	ENST00000571105		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000328585	ENST00000570391		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000328585	ENST00000570388		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-3UTR	ENST00000572675	ENST00000538936		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000572675	ENST00000331285		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000572675	ENST00000538721		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000572675	ENST00000571105		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000572675	ENST00000570391		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
intron-intron	ENST00000572675	ENST00000570388		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	TSPAN10	chr17	79604294	+	PCYT2	chr17	79860770	-
5CDS-intron	ENST00000265107	ENST00000579146		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000265107	ENST00000300658		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000265107	ENST00000378011		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000265107	ENST00000429199		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000504564	ENST00000579146		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000504564	ENST00000300658		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000504564	ENST00000378011		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-intron	ENST00000504564	ENST00000429199		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
3UTR-intron	ENST00000510699	ENST00000579146		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
3UTR-intron	ENST00000510699	ENST00000300658		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
3UTR-intron	ENST00000510699	ENST00000378011		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
3UTR-intron	ENST00000510699	ENST00000429199		TCGA	LD	BRCA	TCGA-A2-A0T1-01A	WDR70	chr5	37480089	+	PGAP3	chr17	37830932	-
5CDS-5UTR	ENST00000330852	ENST00000377710		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000330852	ENST00000377709		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000330852	ENST00000377704		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-intron	ENST00000330852	ENST00000467391		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000288723	ENST00000377710		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000288723	ENST00000377709		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000288723	ENST00000377704		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-intron	ENST00000288723	ENST00000467391		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000338176	ENST00000377710		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000338176	ENST00000377709		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-5UTR	ENST00000338176	ENST00000377704		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
5CDS-intron	ENST00000338176	ENST00000467391		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	RAB28	chr4	13462323	-	MGME1	chr20	17950444	+
Frame-shit	ENST00000344204	ENST00000298119		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
5CDS-intron	ENST00000344204	ENST00000555279		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
5CDS-intron	ENST00000344204	ENST00000554120		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
5CDS-intron	ENST00000344204	ENST00000554171		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
Frame-shit	ENST00000537187	ENST00000298119		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
5CDS-intron	ENST00000537187	ENST00000555279		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
5CDS-intron	ENST00000537187	ENST00000554120		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
5CDS-intron	ENST00000537187	ENST00000554171		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-3CDS	ENST00000509967	ENST00000298119		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000509967	ENST00000555279		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000509967	ENST00000554120		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000509967	ENST00000554171		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-3CDS	ENST00000515710	ENST00000298119		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000515710	ENST00000555279		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000515710	ENST00000554120		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000515710	ENST00000554171		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-3CDS	ENST00000344135	ENST00000298119		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000344135	ENST00000555279		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000344135	ENST00000554120		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
intron-intron	ENST00000344135	ENST00000554171		TCGA	LD	BRCA	TCGA-A2-A0T3-01A	TRIO	chr5	14482882	+	LRFN5	chr14	42368120	+
3UTR-intron	ENST00000520468	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000407775		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000520492		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000517361		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000522296		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000378472		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
5UTR-3CDS	ENST00000486559	ENST00000319023		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5UTR-3CDS	ENST00000486559	ENST00000539574		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5UTR-3CDS	ENST00000486559	ENST00000530055		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5UTR-intron	ENST00000486559	ENST00000526039		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000541324	ENST00000319023		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000541324	ENST00000539574		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000541324	ENST00000530055		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5CDS-intron	ENST00000541324	ENST00000526039		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000370960	ENST00000319023		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000370960	ENST00000539574		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000370960	ENST00000530055		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5CDS-intron	ENST00000370960	ENST00000526039		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000370959	ENST00000319023		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000370959	ENST00000539574		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
Frame-shit	ENST00000370959	ENST00000530055		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5CDS-intron	ENST00000370959	ENST00000526039		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	GSTA4	chr6	52847372	-	NADSYN1	chr11	71208529	+
5CDS-5UTR	ENST00000398645	ENST00000306858		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	KDM2A	chr11	66949363	+	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000529006	ENST00000306858		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	KDM2A	chr11	66949363	+	FAM83B	chr6	54734985	+
intron-5UTR	ENST00000526258	ENST00000306858		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	KDM2A	chr11	66949363	+	FAM83B	chr6	54734985	+
intron-5UTR	ENST00000308783	ENST00000306858		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	KDM2A	chr11	66949363	+	FAM83B	chr6	54734985	+
intron-5UTR	ENST00000530342	ENST00000306858		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	KDM2A	chr11	66949363	+	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000424843	ENST00000523207		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRP12	chr8	105601047	-	KCNB2	chr8	73479877	+
5CDS-5UTR	ENST00000276654	ENST00000523207		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRP12	chr8	105601047	-	KCNB2	chr8	73479877	+
intron-5UTR	ENST00000518375	ENST00000523207		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRP12	chr8	105601047	-	KCNB2	chr8	73479877	+
In-frame	ENST00000370888	ENST00000514921		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
In-frame	ENST00000370888	ENST00000274897		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370888	ENST00000370877		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370888	ENST00000509997		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370888	ENST00000370876		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370888	ENST00000511744		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370888	ENST00000358276		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370888	ENST00000502396		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
In-frame	ENST00000370882	ENST00000514921		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
In-frame	ENST00000370882	ENST00000274897		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370882	ENST00000370877		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370882	ENST00000509997		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370882	ENST00000370876		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370882	ENST00000511744		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370882	ENST00000358276		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370882	ENST00000502396		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53986245	+
In-frame	ENST00000367178	ENST00000367419		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	SCAF8	chr6	155055064	+	GINM1	chr6	149893421	+
3UTR-3CDS	ENST00000461219	ENST00000367419		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	SCAF8	chr6	155055064	+	GINM1	chr6	149893421	+
In-frame	ENST00000417268	ENST00000367419		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	SCAF8	chr6	155055064	+	GINM1	chr6	149893421	+
In-frame	ENST00000367186	ENST00000367419		TCGA	LD	BRCA	TCGA-A2-A0T4-01A	SCAF8	chr6	155055064	+	GINM1	chr6	149893421	+
In-frame	ENST00000294016	ENST00000399609		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	ADCY9	chr16	4163751	-	SRL	chr16	4245787	-
In-frame	ENST00000294016	ENST00000537996		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	ADCY9	chr16	4163751	-	SRL	chr16	4245787	-
intron-3CDS	ENST00000571889	ENST00000399609		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	ADCY9	chr16	4163751	-	SRL	chr16	4245787	-
intron-3CDS	ENST00000571889	ENST00000537996		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	ADCY9	chr16	4163751	-	SRL	chr16	4245787	-
Frame-shit	ENST00000443824	ENST00000380087		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000443824	ENST00000380084		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000443824	ENST00000404022		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000359276	ENST00000380087		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000359276	ENST00000380084		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000359276	ENST00000404022		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000380241	ENST00000380087		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000380241	ENST00000380084		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
Frame-shit	ENST00000380241	ENST00000404022		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
intron-3CDS	ENST00000483053	ENST00000380087		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
intron-3CDS	ENST00000483053	ENST00000380084		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
intron-3CDS	ENST00000483053	ENST00000404022		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	CTPS2	chrX	16716361	-	RBBP7	chrX	16871967	-
5CDS-intron	ENST00000374900	ENST00000540266		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
5CDS-intron	ENST00000374900	ENST00000539019		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
5CDS-intron	ENST00000374900	ENST00000422622		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
5CDS-intron	ENST00000374900	ENST00000242729		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
5CDS-intron	ENST00000374900	ENST00000535504		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
intron-intron	ENST00000491179	ENST00000540266		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
intron-intron	ENST00000491179	ENST00000539019		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
intron-intron	ENST00000491179	ENST00000422622		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
intron-intron	ENST00000491179	ENST00000242729		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
intron-intron	ENST00000491179	ENST00000535504		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	FAAH2	chrX	57319013	+	SSPN	chr12	26440416	+
In-frame	ENST00000271469	ENST00000342310		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000271469	ENST00000294816		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000271469	ENST00000367893		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
5CDS-intron	ENST00000271469	ENST00000489443		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367926	ENST00000342310		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367926	ENST00000294816		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367926	ENST00000367893		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
5CDS-intron	ENST00000367926	ENST00000489443		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
intron-3CDS	ENST00000476240	ENST00000342310		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
intron-3CDS	ENST00000476240	ENST00000294816		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
intron-3CDS	ENST00000476240	ENST00000367893		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
intron-intron	ENST00000476240	ENST00000489443		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367924	ENST00000342310		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367924	ENST00000294816		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367924	ENST00000367893		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
5CDS-intron	ENST00000367924	ENST00000489443		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367925	ENST00000342310		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367925	ENST00000294816		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000367925	ENST00000367893		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
5CDS-intron	ENST00000367925	ENST00000489443		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UAP1	chr1	162560301	+	LMX1A	chr1	165218877	-
In-frame	ENST00000380680	ENST00000262424		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UBL3	chr13	30346249	-	CRISPLD2	chr16	84900503	+
In-frame	ENST00000380680	ENST00000567845		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UBL3	chr13	30346249	-	CRISPLD2	chr16	84900503	+
5CDS-intron	ENST00000380680	ENST00000566431		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UBL3	chr13	30346249	-	CRISPLD2	chr16	84900503	+
5CDS-intron	ENST00000380680	ENST00000564567		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UBL3	chr13	30346249	-	CRISPLD2	chr16	84900503	+
5CDS-intron	ENST00000380680	ENST00000569090		TCGA	LD	BRCA	TCGA-A2-A0T7-01A	UBL3	chr13	30346249	-	CRISPLD2	chr16	84900503	+
Frame-shit	ENST00000300976	ENST00000540691		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000300976	ENST00000539106		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000300976	ENST00000222307		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000600796		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000601630		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000599000		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000595073		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000599319		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000602094		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000300976	ENST00000598830		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000595182	ENST00000540691		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000595182	ENST00000539106		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000595182	ENST00000222307		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000600796		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000601630		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000599000		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000595073		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000599319		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000602094		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000595182	ENST00000598830		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000599006	ENST00000540691		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000599006	ENST00000539106		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
Frame-shit	ENST00000599006	ENST00000222307		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000600796		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000601630		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000599000		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000595073		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000599319		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000602094		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-intron	ENST00000599006	ENST00000598830		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-3CDS	ENST00000596843	ENST00000540691		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-3CDS	ENST00000596843	ENST00000539106		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-3CDS	ENST00000596843	ENST00000222307		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000600796		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000601630		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000599000		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000595073		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000599319		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000602094		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
3UTR-intron	ENST00000596843	ENST00000598830		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	KLHL26	chr19	18775253	+	KXD1	chr19	18679212	+
5CDS-5UTR	ENST00000361445	ENST00000400259		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000361445	ENST00000344548		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000361445	ENST00000315554		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
5CDS-3UTR	ENST00000361445	ENST00000498236		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000361445	ENST00000421089		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000376838	ENST00000400259		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000376838	ENST00000344548		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000376838	ENST00000315554		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000376838	ENST00000498236		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000376838	ENST00000421089		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000495435	ENST00000400259		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000495435	ENST00000344548		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000495435	ENST00000315554		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000495435	ENST00000498236		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000495435	ENST00000421089		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	MTOR	chr1	11259315	-	CDC42	chr1	22404922	+
In-frame	ENST00000402802	ENST00000610140		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
In-frame	ENST00000402802	ENST00000381626		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
In-frame	ENST00000402802	ENST00000396152		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
In-frame	ENST00000402802	ENST00000242210		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
In-frame	ENST00000402802	ENST00000405342		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
In-frame	ENST00000402802	ENST00000409467		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
In-frame	ENST00000402802	ENST00000409787		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000610140		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000381626		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000396152		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000242210		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000405342		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000409467		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
Frame-shit	ENST00000354513	ENST00000409787		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000610140		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000381626		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000396152		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000242210		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000405342		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000409467		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
intron-3CDS	ENST00000426681	ENST00000409787		TCGA	LD	BRCA	TCGA-A2-A0YE-01A	PDGFA	chr7	550446	-	NT5C3A	chr7	33063720	-
5CDS-intron	ENST00000420843	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000420843	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000420843	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-3UTR	ENST00000420843	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000393505	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000393505	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000393505	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-3UTR	ENST00000393505	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000360025	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000360025	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-intron	ENST00000360025	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
5CDS-3UTR	ENST00000360025	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	ARRB1	chr11	74992119	-	MYEOV	chr11	69181807	+
In-frame	ENST00000377897	ENST00000405837		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000377897	ENST00000433053		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000377897	ENST00000278893		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000377897	ENST00000360796		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000377897	ENST00000403550		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000377897	ENST00000407022		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000377897	ENST00000421906		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000377897	ENST00000537604		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000405837		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000433053		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000278893		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000360796		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000403550		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000407022		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000294179	ENST00000421906		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000294179	ENST00000537604		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000405837		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000433053		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000278893		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000360796		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000403550		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000407022		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000394690	ENST00000421906		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000394690	ENST00000537604		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000405837		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000433053		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000278893		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000360796		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000403550		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000407022		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000541317	ENST00000421906		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000541317	ENST00000537604		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	STX5	chr11	62592508	-	BSCL2	chr11	62462183	-
In-frame	ENST00000355327	ENST00000249861		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	THSD4	chr15	71447271	+	THAP10	chr15	71175247	-
In-frame	ENST00000261862	ENST00000249861		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	THSD4	chr15	71447271	+	THAP10	chr15	71175247	-
intron-3CDS	ENST00000357769	ENST00000249861		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	THSD4	chr15	71447271	+	THAP10	chr15	71175247	-
intron-3CDS	ENST00000567838	ENST00000249861		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	THSD4	chr15	71447271	+	THAP10	chr15	71175247	-
5CDS-intron	ENST00000356136	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000356136	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000356136	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5CDS-3UTR	ENST00000356136	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5UTR-intron	ENST00000528420	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5UTR-intron	ENST00000528420	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5UTR-intron	ENST00000528420	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
5UTR-3UTR	ENST00000528420	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000533454	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000533454	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000533454	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000533454	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000531818	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000531818	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000531818	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000531818	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000532130	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000532130	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000532130	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000532130	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000539288	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000539288	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000539288	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000539288	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000525872	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000525872	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000525872	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000525872	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000538870	ENST00000441339		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000538870	ENST00000308946		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000538870	ENST00000535407		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000538870	ENST00000541137		TCGA	LD	BRCA	TCGA-A2-A0YF-01A	UVRAG	chr11	75572825	+	MYEOV	chr11	69181511	+
Frame-shit	ENST00000369109	ENST00000421743		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-5UTR	ENST00000369109	ENST00000367909		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000369109	ENST00000531057		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000369109	ENST00000527809		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000369109	ENST00000367908		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000369109	ENST00000491263		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000369109	ENST00000367906		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
Frame-shit	ENST00000360244	ENST00000421743		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-5UTR	ENST00000360244	ENST00000367909		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000360244	ENST00000531057		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000360244	ENST00000527809		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000360244	ENST00000367908		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000360244	ENST00000491263		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000360244	ENST00000367906		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
Frame-shit	ENST00000414276	ENST00000421743		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-5UTR	ENST00000414276	ENST00000367909		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000414276	ENST00000531057		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000414276	ENST00000527809		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000414276	ENST00000367908		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000414276	ENST00000491263		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5CDS-intron	ENST00000414276	ENST00000367906		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-3CDS	ENST00000461320	ENST00000421743		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-5UTR	ENST00000461320	ENST00000367909		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-intron	ENST00000461320	ENST00000531057		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-intron	ENST00000461320	ENST00000527809		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-intron	ENST00000461320	ENST00000367908		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-intron	ENST00000461320	ENST00000491263		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
5UTR-intron	ENST00000461320	ENST00000367906		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	APH1A	chr1	150241098	-	RGS4	chr1	163039042	+
In-frame	ENST00000367843	ENST00000359523		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367843	ENST00000392121		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367843	ENST00000474859		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367843	ENST00000403379		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000359523		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000392121		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000474859		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000432587	ENST00000403379		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000359523		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000392121		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000474859		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000312263	ENST00000403379		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000359523		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000392121		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000474859		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367840	ENST00000403379		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000359523		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000392121		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000474859		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
intron-intron	ENST00000470919	ENST00000403379		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF6	chr1	167906246	+	MPZL1	chr1	167734820	+
3UTR-intron	ENST00000577702	ENST00000443584		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000577702	ENST00000449996		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000577702	ENST00000262406		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000577702	ENST00000577186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000310827	ENST00000443584		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000310827	ENST00000449996		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000310827	ENST00000262406		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000310827	ENST00000577186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000431926	ENST00000443584		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000431926	ENST00000449996		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000431926	ENST00000262406		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000431926	ENST00000577186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000415273	ENST00000443584		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000415273	ENST00000449996		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000415273	ENST00000262406		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000415273	ENST00000577186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	DCAF7	chr17	61628176	+	RGS9	chr17	63115270	+
In-frame	ENST00000530878	ENST00000367759		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
5CDS-intron	ENST00000530878	ENST00000367758		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
In-frame	ENST00000361897	ENST00000367759		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
5CDS-intron	ENST00000361897	ENST00000367758		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
intron-3CDS	ENST00000493151	ENST00000367759		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
intron-intron	ENST00000493151	ENST00000367758		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
intron-3CDS	ENST00000454693	ENST00000367759		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
intron-intron	ENST00000454693	ENST00000367758		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	NOS1AP	chr1	162302915	+	MROH9	chr1	170983258	+
In-frame	ENST00000394609	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000394609	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000394609	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000405240	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000405240	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000357376	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000357376	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000317610	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000317610	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000357732	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000357732	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000337526	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000337526	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000394611	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000394611	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000404909	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000404909	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-3CDS	ENST00000486085	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5UTR-intron	ENST00000486085	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000354474	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000354474	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000496972		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000405222		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000407661		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000406818		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000407038		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000404103		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000407186		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000288642		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
In-frame	ENST00000402434	ENST00000545439		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
5CDS-intron	ENST00000402434	ENST00000472690		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	RTN4	chr2	55209651	-	DTNB	chr2	25611230	-
Frame-shit	ENST00000367879	ENST00000458013		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
Frame-shit	ENST00000367879	ENST00000368843		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
In-frame	ENST00000367879	ENST00000368838		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
5CDS-intron	ENST00000367879	ENST00000482791		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
Frame-shit	ENST00000372212	ENST00000458013		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
Frame-shit	ENST00000372212	ENST00000368843		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
In-frame	ENST00000372212	ENST00000368838		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
5CDS-intron	ENST00000372212	ENST00000482791		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000462329	ENST00000458013		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000462329	ENST00000368843		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000462329	ENST00000368838		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-intron	ENST00000462329	ENST00000482791		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000469256	ENST00000458013		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000469256	ENST00000368843		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000469256	ENST00000368838		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-intron	ENST00000469256	ENST00000482791		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000470820	ENST00000458013		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000470820	ENST00000368843		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-3CDS	ENST00000470820	ENST00000368838		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-intron	ENST00000470820	ENST00000482791		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	UCK2	chr1	165797169	+	SNX27	chr1	151611364	+
intron-intron	ENST00000596528	ENST00000259605		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000596528	ENST00000353739		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000596528	ENST00000357058		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000596528	ENST00000350199		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000596528	ENST00000377885		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000596528	ENST00000377877		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000596528	ENST00000491349		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000259605		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000353739		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000357058		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000350199		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000377885		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000377877		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000599743	ENST00000491349		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000259605		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000353739		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000357058		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000350199		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000377885		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000377877		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5CDS-intron	ENST00000300619	ENST00000491349		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000259605		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000353739		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000357058		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000350199		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000377885		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000377877		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
intron-intron	ENST00000397082	ENST00000491349		TCGA	LD	BRCA	TCGA-A2-A0YG-01A	ZNF91	chr19	23556540	-	RNF38	chr9	36424676	-
5UTR-3UTR	ENST00000307116	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000307116	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000307116	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000373008	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000373008	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000373008	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000263556	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000263556	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000263556	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000412021	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000412021	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000412021	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000440381	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000440381	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000440381	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000394890	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000394890	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
5UTR-3UTR	ENST00000394890	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A0YH-01A	P4HA1	chr10	74856524	-	C10orf11	chr10	78316967	+
In-frame	ENST00000320580	ENST00000308831		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
In-frame	ENST00000320580	ENST00000533360		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000320580	ENST00000532559		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000529757	ENST00000308831		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000529757	ENST00000533360		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
intron-intron	ENST00000529757	ENST00000532559		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524815	ENST00000308831		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524815	ENST00000533360		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
intron-intron	ENST00000524815	ENST00000532559		TCGA	LD	BRCA	TCGA-A2-A0YI-01A	PACS1	chr11	65961044	+	RHOD	chr11	66833367	+
In-frame	ENST00000264645	ENST00000394126		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	CASC3	chr17	38297860	+	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000264645	ENST00000356271		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	CASC3	chr17	38297860	+	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000264645	ENST00000394128		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	CASC3	chr17	38297860	+	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000264645	ENST00000394127		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	CASC3	chr17	38297860	+	MED24	chr17	38209888	-
5CDS-intron	ENST00000264645	ENST00000501516		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	CASC3	chr17	38297860	+	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000264645	ENST00000479829		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	CASC3	chr17	38297860	+	MED24	chr17	38209888	-
intron-3CDS	ENST00000409947	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000409947	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000409947	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000409947	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000409947	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-intron	ENST00000409947	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000344908	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000344908	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000344908	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000344908	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000344908	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
intron-intron	ENST00000344908	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MAP3K2	chr2	128145028	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000265350	ENST00000373025		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
Frame-shit	ENST00000265350	ENST00000425343		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
5UTR-3CDS	ENST00000467535	ENST00000373025		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
5UTR-3CDS	ENST00000467535	ENST00000425343		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
Frame-shit	ENST00000409312	ENST00000373025		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
Frame-shit	ENST00000409312	ENST00000425343		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
Frame-shit	ENST00000409060	ENST00000373025		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
Frame-shit	ENST00000409060	ENST00000425343		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	MED20	chr6	41884523	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000230323	ENST00000318008		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000230323	ENST00000433206		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000230323	ENST00000435347		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000358871	ENST00000318008		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000358871	ENST00000433206		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000358871	ENST00000435347		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000420312	ENST00000318008		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000420312	ENST00000433206		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000420312	ENST00000435347		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000403298	ENST00000318008		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000403298	ENST00000433206		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000403298	ENST00000435347		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
5UTR-3CDS	ENST00000373033	ENST00000318008		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
5UTR-5UTR	ENST00000373033	ENST00000433206		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
5UTR-5UTR	ENST00000373033	ENST00000435347		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000394283	ENST00000318008		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000394283	ENST00000433206		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000394283	ENST00000435347		TCGA	LD	BRCA	TCGA-A2-A0YJ-01A	TFEB	chr6	41703088	-	LASP1	chr17	37034339	+
5CDS-intron	ENST00000338205	ENST00000395505		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-intron	ENST00000338205	ENST00000395506		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-5UTR	ENST00000338205	ENST00000375495		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-intron	ENST00000338205	ENST00000332591		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-intron	ENST00000259335	ENST00000395505		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-intron	ENST00000259335	ENST00000395506		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-5UTR	ENST00000259335	ENST00000375495		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
5CDS-intron	ENST00000259335	ENST00000332591		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-intron	ENST00000374378	ENST00000395505		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-intron	ENST00000374378	ENST00000395506		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-5UTR	ENST00000374378	ENST00000375495		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-intron	ENST00000374378	ENST00000332591		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-intron	ENST00000465499	ENST00000395505		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-intron	ENST00000465499	ENST00000395506		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-5UTR	ENST00000465499	ENST00000375495		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
intron-intron	ENST00000465499	ENST00000332591		TCGA	LD	BRCA	TCGA-A2-A0YK-01A	KIAA0368	chr9	114185479	-	ZNF484	chr9	95637341	-
Frame-shit	ENST00000367843	ENST00000236137		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000367843	ENST00000367804		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000432587	ENST00000236137		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000432587	ENST00000367804		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000312263	ENST00000236137		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000312263	ENST00000367804		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000367840	ENST00000236137		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
Frame-shit	ENST00000367840	ENST00000367804		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
intron-3CDS	ENST00000470919	ENST00000236137		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
intron-3CDS	ENST00000470919	ENST00000367804		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	DCAF6	chr1	167906246	+	SLC19A2	chr1	169439424	-
5CDS-5UTR	ENST00000334370	ENST00000598490		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
5CDS-5UTR	ENST00000334370	ENST00000341747		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
5CDS-5UTR	ENST00000334370	ENST00000499536		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
5CDS-5UTR	ENST00000251268	ENST00000598490		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
5CDS-5UTR	ENST00000251268	ENST00000341747		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
5CDS-5UTR	ENST00000251268	ENST00000499536		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
intron-5UTR	ENST00000378073	ENST00000598490		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
intron-5UTR	ENST00000378073	ENST00000341747		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
intron-5UTR	ENST00000378073	ENST00000499536		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	MEGF8	chr19	42841358	+	PRR19	chr19	42813731	+
5CDS-intron	ENST00000400316	ENST00000581073		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000400316	ENST00000585159		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000400316	ENST00000269503		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000400316	ENST00000584764		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000400316	ENST00000583651		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000262719	ENST00000581073		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000262719	ENST00000585159		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000262719	ENST00000269503		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000262719	ENST00000584764		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000262719	ENST00000583651		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
intron-intron	ENST00000588953	ENST00000581073		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
intron-intron	ENST00000588953	ENST00000585159		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
intron-intron	ENST00000588953	ENST00000269503		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
intron-intron	ENST00000588953	ENST00000584764		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
intron-intron	ENST00000588953	ENST00000583651		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	PHLPP1	chr18	60639941	+	CBLN2	chr18	70287825	-
5CDS-intron	ENST00000415083	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000415083	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000415083	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000415083	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000415083	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000415083	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000542420	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000542420	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000542420	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000542420	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000542420	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000542420	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000542743	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000542743	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000542743	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000542743	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000542743	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000542743	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000539849	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000539849	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000539849	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000539849	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000539849	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000539849	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000269137	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000269137	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000269137	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000269137	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000269137	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5CDS-intron	ENST00000269137	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000545952	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000545952	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000545952	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000545952	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000545952	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000545952	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000585241	ENST00000371460		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000585241	ENST00000371459		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000585241	ENST00000371461		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000585241	ENST00000306867		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000585241	ENST00000371458		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
5UTR-intron	ENST00000585241	ENST00000459689		TCGA	LD	BRCA	TCGA-A2-A0YM-01A	SS18	chr18	23667465	-	SUPT3H	chr6	44777238	-
intron-3CDS	ENST00000182096	ENST00000463745		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000182096	ENST00000394206		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000182096	ENST00000335979		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3UTR	ENST00000182096	ENST00000496713		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000485253	ENST00000463745		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000485253	ENST00000394206		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000485253	ENST00000335979		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3UTR	ENST00000485253	ENST00000496713		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
In-frame	ENST00000419587	ENST00000463745		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
In-frame	ENST00000419587	ENST00000394206		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
In-frame	ENST00000419587	ENST00000335979		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
5CDS-3UTR	ENST00000419587	ENST00000496713		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000389622	ENST00000463745		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000389622	ENST00000394206		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3CDS	ENST00000389622	ENST00000335979		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
intron-3UTR	ENST00000389622	ENST00000496713		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	CRYBG3	chr3	97583491	+	ARL6	chr3	97503799	+
5CDS-intron	ENST00000436443	ENST00000571730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000436443	ENST00000541223		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000436443	ENST00000331531		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000436443	ENST00000350690		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-5UTR	ENST00000436443	ENST00000545862		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000342788	ENST00000571730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000342788	ENST00000541223		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000342788	ENST00000331531		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000342788	ENST00000350690		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-5UTR	ENST00000342788	ENST00000545862		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000402597	ENST00000571730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000402597	ENST00000541223		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000402597	ENST00000331531		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-intron	ENST00000402597	ENST00000350690		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
5CDS-5UTR	ENST00000402597	ENST00000545862		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
intron-intron	ENST00000484474	ENST00000571730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
intron-intron	ENST00000484474	ENST00000541223		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
intron-intron	ENST00000484474	ENST00000331531		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
intron-intron	ENST00000484474	ENST00000350690		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
intron-5UTR	ENST00000484474	ENST00000545862		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	ERBB4	chr2	213403173	-	SLC25A10	chr17	79681983	+
intron-5UTR	ENST00000356350	ENST00000377791		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	HIST1H2BH	chr6	26252371	+	HIST1H2AC	chr6	26124428	+
intron-5UTR	ENST00000356350	ENST00000602637		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	HIST1H2BH	chr6	26252371	+	HIST1H2AC	chr6	26124428	+
intron-3CDS	ENST00000540235	ENST00000290524		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000540235	ENST00000368870		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000540235	ENST00000452671		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000540235	ENST00000452513		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-intron	ENST00000540235	ENST00000478564		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393930	ENST00000290524		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393930	ENST00000368870		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393930	ENST00000452671		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393930	ENST00000452513		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-intron	ENST00000393930	ENST00000478564		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393931	ENST00000290524		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393931	ENST00000368870		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393931	ENST00000452671		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000393931	ENST00000452513		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-intron	ENST00000393931	ENST00000478564		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000310706	ENST00000290524		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000310706	ENST00000368870		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000310706	ENST00000452671		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-3CDS	ENST00000310706	ENST00000452513		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
intron-intron	ENST00000310706	ENST00000478564		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	JUP	chr17	39923781	-	RFX5	chr1	151315256	-
Frame-shit	ENST00000434013	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000434013	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000434013	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000434013	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000434013	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000434013	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000541064	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000541064	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000541064	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000541064	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000541064	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000541064	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000555619	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000555619	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000555619	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000555619	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000555619	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000555619	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000238633	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000238633	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000238633	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000238633	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000238633	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000238633	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000557510	ENST00000487861		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000557510	ENST00000471583		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000557510	ENST00000487270		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000557510	ENST00000488612		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
Frame-shit	ENST00000557510	ENST00000390683		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000557510	ENST00000469165		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	NPC2	chr14	74959896	-	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000307296	ENST00000582730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-5UTR	ENST00000307296	ENST00000581497		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-5UTR	ENST00000307296	ENST00000584773		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-5UTR	ENST00000307296	ENST00000585096		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-3UTR	ENST00000307296	ENST00000258962		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-3UTR	ENST00000457054	ENST00000582730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-5UTR	ENST00000457054	ENST00000581497		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-5UTR	ENST00000457054	ENST00000584773		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-5UTR	ENST00000457054	ENST00000585096		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
5CDS-3UTR	ENST00000457054	ENST00000258962		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
intron-3UTR	ENST00000498147	ENST00000582730		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
intron-5UTR	ENST00000498147	ENST00000581497		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
intron-5UTR	ENST00000498147	ENST00000584773		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
intron-5UTR	ENST00000498147	ENST00000585096		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
intron-3UTR	ENST00000498147	ENST00000258962		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	PDCD6IP	chr3	33868072	+	SRSF1	chr17	56082402	-
Frame-shit	ENST00000487861	ENST00000534111		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487861	ENST00000522307		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487861	ENST00000523251		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487861	ENST00000437212		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487861	ENST00000522824		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
5CDS-intron	ENST00000487861	ENST00000518413		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000471583	ENST00000534111		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000471583	ENST00000522307		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000471583	ENST00000523251		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000471583	ENST00000437212		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000471583	ENST00000522824		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
5CDS-intron	ENST00000471583	ENST00000518413		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487270	ENST00000534111		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487270	ENST00000522307		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487270	ENST00000523251		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487270	ENST00000437212		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000487270	ENST00000522824		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
5CDS-intron	ENST00000487270	ENST00000518413		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000488612	ENST00000534111		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000488612	ENST00000522307		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000488612	ENST00000523251		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000488612	ENST00000437212		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000488612	ENST00000522824		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
5CDS-intron	ENST00000488612	ENST00000518413		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000390683	ENST00000534111		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000390683	ENST00000522307		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000390683	ENST00000523251		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000390683	ENST00000437212		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
Frame-shit	ENST00000390683	ENST00000522824		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
5CDS-intron	ENST00000390683	ENST00000518413		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
3UTR-3CDS	ENST00000469165	ENST00000534111		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
3UTR-3CDS	ENST00000469165	ENST00000522307		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
3UTR-3CDS	ENST00000469165	ENST00000523251		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
3UTR-3CDS	ENST00000469165	ENST00000437212		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
3UTR-3CDS	ENST00000469165	ENST00000522824		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
3UTR-intron	ENST00000469165	ENST00000518413		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	RAD51B	chr14	68878244	+	TMPRSS4	chr11	117982456	+
In-frame	ENST00000399537	ENST00000425013		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
In-frame	ENST00000399537	ENST00000389902		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000399537	ENST00000469375		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
In-frame	ENST00000430969	ENST00000425013		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
In-frame	ENST00000430969	ENST00000389902		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000430969	ENST00000469375		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-intron	ENST00000399434	ENST00000469375		TCGA	LD	BRCA	TCGA-A2-A0YT-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000542227	ENST00000256404		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
intron-intron	ENST00000542227	ENST00000521284		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
intron-3CDS	ENST00000447296	ENST00000256404		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
intron-intron	ENST00000447296	ENST00000521284		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
In-frame	ENST00000246166	ENST00000256404		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
5CDS-intron	ENST00000246166	ENST00000521284		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
intron-3CDS	ENST00000555742	ENST00000256404		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
intron-intron	ENST00000555742	ENST00000521284		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	FNTB	chr14	65453815	+	PEBP4	chr8	22584733	-
In-frame	ENST00000256404	ENST00000287272		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
In-frame	ENST00000256404	ENST00000453357		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
In-frame	ENST00000256404	ENST00000404895		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
In-frame	ENST00000256404	ENST00000420357		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
In-frame	ENST00000256404	ENST00000416672		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000256404	ENST00000449677		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000521284	ENST00000287272		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000521284	ENST00000453357		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000521284	ENST00000404895		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000521284	ENST00000420357		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000521284	ENST00000416672		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
intron-intron	ENST00000521284	ENST00000449677		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	PEBP4	chr8	22582356	-	UNC5D	chr8	35406810	+
3UTR-5UTR	ENST00000545826	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
3UTR-5UTR	ENST00000545826	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
3UTR-5UTR	ENST00000545826	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
3UTR-5UTR	ENST00000545826	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
3UTR-5UTR	ENST00000545826	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000513237	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000513237	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000513237	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000513237	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000513237	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000540549	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000540549	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000540549	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000540549	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000540549	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000380013	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000380013	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000380013	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000380013	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
5CDS-5UTR	ENST00000380013	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000305737	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000305737	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000305737	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000305737	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000305737	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000394764	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000394764	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000394764	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000394764	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000394764	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000504042	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000504042	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000504042	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000504042	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000504042	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000413648	ENST00000443314		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000413648	ENST00000441020		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000413648	ENST00000450366		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000413648	ENST00000233714		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000413648	ENST00000431941		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	TET2	chr4	106164935	+	LANCL1	chr2	211341136	-
Frame-shit	ENST00000379487	ENST00000368693		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000379487	ENST00000368695		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000379487	ENST00000449042		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000379487	ENST00000368689		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-intron	ENST00000379487	ENST00000477963		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
Frame-shit	ENST00000542082	ENST00000368693		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000542082	ENST00000368695		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000542082	ENST00000449042		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000542082	ENST00000368689		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5CDS-intron	ENST00000542082	ENST00000477963		TCGA	LD	BRCA	TCGA-A2-A1FV-01A	WBP4	chr13	41635811	+	FANK1	chr10	127668730	+
5UTR-5UTR	ENST00000475338	ENST00000484834		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5UTR-intron	ENST00000475338	ENST00000367229		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5UTR-intron	ENST00000475338	ENST00000255427		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5UTR-intron	ENST00000475338	ENST00000535569		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5CDS-5UTR	ENST00000367595	ENST00000484834		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000367595	ENST00000367229		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000367595	ENST00000255427		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000367595	ENST00000535569		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ACBD6	chr1	180382501	-	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000589222	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000407086	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000390652	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000408905	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000588462	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000585744	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000588874	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
intron-intron	ENST00000585812	ENST00000300900		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BCAS3	chr17	59161925	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000380152	ENST00000380130		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000380152	ENST00000380139		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000380152	ENST00000530622		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000380152	ENST00000459716		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000380152	ENST00000380133		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000544455	ENST00000380130		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000544455	ENST00000380139		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000544455	ENST00000530622		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000544455	ENST00000459716		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
5CDS-intron	ENST00000544455	ENST00000380133		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	BRCA2	chr13	32954282	+	N4BP2L1	chr13	32994713	-
intron-3UTR	ENST00000225719	ENST00000367262		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748909	+	RABIF	chr1	202848716	-
intron-3UTR	ENST00000543464	ENST00000367262		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748909	+	RABIF	chr1	202848716	-
intron-3UTR	ENST00000584051	ENST00000367262		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	CPD	chr17	28748909	+	RABIF	chr1	202848716	-
5CDS-3UTR	ENST00000331244	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000331244	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000331244	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000368644	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000368644	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000368644	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000496195	ENST00000593699		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000496195	ENST00000372499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000496195	ENST00000496424		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	GLRX3	chr10	131973353	+	C10orf11	chr10	78316967	+
5UTR-3CDS	ENST00000446760	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
5UTR-intron	ENST00000446760	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
5UTR-intron	ENST00000446760	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
5UTR-intron	ENST00000446760	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000442909	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000442909	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000442909	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000442909	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000309471	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000309471	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000309471	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000309471	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000439206	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000439206	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000439206	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000439206	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000446080	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000446080	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000446080	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000446080	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000447862	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000447862	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000447862	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000447862	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000438910	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000438910	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000438910	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000438910	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000414957	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000414957	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000414957	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000414957	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000438411	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000438411	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000438411	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000438411	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-3CDS	ENST00000537773	ENST00000300896		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000537773	ENST00000592339		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000537773	ENST00000393003		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
intron-intron	ENST00000537773	ENST00000586881		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	NBPF12	chr1	146374324	+	USP32	chr17	58348842	-
5CDS-5UTR	ENST00000244007	ENST00000253354		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
5CDS-intron	ENST00000244007	ENST00000464032		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
5CDS-5UTR	ENST00000373272	ENST00000253354		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
5CDS-intron	ENST00000373272	ENST00000464032		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
5CDS-5UTR	ENST00000373271	ENST00000253354		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
5CDS-intron	ENST00000373271	ENST00000464032		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
intron-5UTR	ENST00000608689	ENST00000253354		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
intron-intron	ENST00000608689	ENST00000464032		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PLCG1	chr20	39766498	+	BPIFB1	chr20	31873839	+
Frame-shit	ENST00000536514	ENST00000354955		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
5CDS-5UTR	ENST00000536514	ENST00000493296		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
Frame-shit	ENST00000537173	ENST00000354955		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
5CDS-5UTR	ENST00000537173	ENST00000493296		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
In-frame	ENST00000367876	ENST00000354955		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
5CDS-5UTR	ENST00000367876	ENST00000493296		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
In-frame	ENST00000367875	ENST00000354955		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
5CDS-5UTR	ENST00000367875	ENST00000493296		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	POGK	chr1	166810325	+	FMOD	chr1	203311622	-
In-frame	ENST00000413366	ENST00000225387		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PRKCA	chr17	64302245	+	CRYBA1	chr17	27576160	+
3UTR-3CDS	ENST00000583361	ENST00000225387		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	PRKCA	chr17	64302245	+	CRYBA1	chr17	27576160	+
In-frame	ENST00000358951	ENST00000465271		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
5CDS-intron	ENST00000358951	ENST00000366858		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
5CDS-intron	ENST00000358951	ENST00000366857		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
5CDS-3UTR	ENST00000358951	ENST00000468318		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
5CDS-intron	ENST00000358951	ENST00000366856		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
intron-3CDS	ENST00000462353	ENST00000465271		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
intron-intron	ENST00000462353	ENST00000366858		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
intron-intron	ENST00000462353	ENST00000366857		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
intron-3UTR	ENST00000462353	ENST00000468318		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
intron-intron	ENST00000462353	ENST00000366856		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RAB3GAP2	chr1	220383730	-	CNIH4	chr1	224563497	+
intron-5UTR	ENST00000367689	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367689	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000357444	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000357444	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
5CDS-5UTR	ENST00000251507	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
5CDS-5UTR	ENST00000251507	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000325589	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000325589	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367686	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367686	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367687	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367687	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000347255	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000347255	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000489615	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000489615	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000478442	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000478442	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000486220	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000486220	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000392064	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000392064	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367688	ENST00000475338		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
intron-5UTR	ENST00000367688	ENST00000367595		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RABGAP1L	chr1	174606626	+	ACBD6	chr1	180366740	-
Frame-shit	ENST00000443572	ENST00000579585		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000443572	ENST00000584573		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000443572	ENST00000361733		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000443572	ENST00000361357		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000443572	ENST00000577395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000443572	ENST00000577784		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000406116	ENST00000579585		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000406116	ENST00000584573		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000406116	ENST00000361733		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000406116	ENST00000361357		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000406116	ENST00000577395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000406116	ENST00000577784		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000225577	ENST00000579585		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000225577	ENST00000584573		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000225577	ENST00000361733		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000225577	ENST00000361357		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000225577	ENST00000577395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000225577	ENST00000577784		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000393021	ENST00000579585		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000393021	ENST00000584573		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000393021	ENST00000361733		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000393021	ENST00000361357		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
Frame-shit	ENST00000393021	ENST00000577395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000393021	ENST00000577784		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
intron-3CDS	ENST00000587061	ENST00000579585		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
intron-3CDS	ENST00000587061	ENST00000584573		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
intron-3CDS	ENST00000587061	ENST00000361733		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
intron-3CDS	ENST00000587061	ENST00000361357		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
intron-3CDS	ENST00000587061	ENST00000577395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
intron-intron	ENST00000587061	ENST00000577784		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	RPS6KB1	chr17	58022879	+	MAP3K3	chr17	61723394	+
5CDS-5UTR	ENST00000424789	ENST00000367510		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TANC2	chr17	61345234	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000424789	ENST00000367509		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TANC2	chr17	61345234	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000389520	ENST00000367510		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TANC2	chr17	61345234	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000389520	ENST00000367509		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TANC2	chr17	61345234	+	RNF2	chr1	185056684	+
In-frame	ENST00000588847	ENST00000334005		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588847	ENST00000378473		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588847	ENST00000278655		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588847	ENST00000414679		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000588847	ENST00000492632		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000588847	ENST00000378501		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000588847	ENST00000378493		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588061	ENST00000334005		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588061	ENST00000378473		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588061	ENST00000278655		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000588061	ENST00000414679		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000588061	ENST00000492632		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000588061	ENST00000378501		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000588061	ENST00000378493		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000335749	ENST00000334005		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000335749	ENST00000378473		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000335749	ENST00000278655		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000335749	ENST00000414679		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000335749	ENST00000492632		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000335749	ENST00000378501		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000335749	ENST00000378493		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000301624	ENST00000334005		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000301624	ENST00000378473		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000301624	ENST00000278655		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000301624	ENST00000414679		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000301624	ENST00000492632		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000301624	ENST00000378501		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000301624	ENST00000378493		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000541771	ENST00000334005		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000541771	ENST00000378473		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000541771	ENST00000278655		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000541771	ENST00000414679		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000541771	ENST00000492632		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000541771	ENST00000378501		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000541771	ENST00000378493		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000544502	ENST00000334005		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000544502	ENST00000378473		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000544502	ENST00000278655		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000544502	ENST00000414679		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000544502	ENST00000492632		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000544502	ENST00000378501		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
5CDS-3UTR	ENST00000544502	ENST00000378493		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TNRC6C	chr17	76079247	+	PLCB4	chr20	9433994	+
In-frame	ENST00000353024	ENST00000413366		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5CDS-intron	ENST00000353024	ENST00000583361		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
In-frame	ENST00000392712	ENST00000413366		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5CDS-intron	ENST00000392712	ENST00000583361		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
In-frame	ENST00000368849	ENST00000413366		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5CDS-intron	ENST00000368849	ENST00000583361		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
In-frame	ENST00000368848	ENST00000413366		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5CDS-intron	ENST00000368848	ENST00000583361		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5UTR-3CDS	ENST00000538902	ENST00000413366		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5UTR-intron	ENST00000538902	ENST00000583361		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	TUFT1	chr1	151512902	+	PRKCA	chr17	64782985	+
5CDS-5UTR	ENST00000262291	ENST00000336095		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000262291	ENST00000358395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000262291	ENST00000432261		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000262291	ENST00000545616		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000537567	ENST00000336095		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000537567	ENST00000358395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000537567	ENST00000432261		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000537567	ENST00000545616		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000539763	ENST00000336095		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000539763	ENST00000358395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000539763	ENST00000432261		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000539763	ENST00000545616		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000536180	ENST00000336095		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000536180	ENST00000358395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000536180	ENST00000432261		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5UTR-5UTR	ENST00000536180	ENST00000545616		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000545362	ENST00000336095		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000545362	ENST00000358395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000545362	ENST00000432261		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
5CDS-5UTR	ENST00000545362	ENST00000545616		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
intron-5UTR	ENST00000588617	ENST00000336095		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
intron-5UTR	ENST00000588617	ENST00000358395		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
intron-5UTR	ENST00000588617	ENST00000432261		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
intron-5UTR	ENST00000588617	ENST00000545616		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57808883	+	RNF24	chr20	3944671	-
In-frame	ENST00000262291	ENST00000305783		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000262291	ENST00000442346		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
In-frame	ENST00000537567	ENST00000305783		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000537567	ENST00000442346		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
In-frame	ENST00000539763	ENST00000305783		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000539763	ENST00000442346		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
In-frame	ENST00000536180	ENST00000305783		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000536180	ENST00000442346		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
In-frame	ENST00000545362	ENST00000305783		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000545362	ENST00000442346		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
intron-3CDS	ENST00000588617	ENST00000305783		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
intron-3UTR	ENST00000588617	ENST00000442346		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	VMP1	chr17	57851246	+	RNFT1	chr17	58031507	-
intron-3CDS	ENST00000550078	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZBED6	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3CDS	ENST00000550078	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZBED6	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3UTR	ENST00000550078	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZBED6	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3UTR	ENST00000550078	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZBED6	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3UTR	ENST00000550078	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZBED6	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000367214	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000367214	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367214	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367214	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367214	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000367212	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000367212	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367212	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367212	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367212	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000332127	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000332127	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000332127	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000332127	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000332127	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000545588	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000545588	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000545588	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000545588	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000545588	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000367210	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
Frame-shit	ENST00000367210	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367210	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367210	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-3UTR	ENST00000367210	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3CDS	ENST00000466470	ENST00000358024		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3CDS	ENST00000466470	ENST00000545499		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3UTR	ENST00000466470	ENST00000495538		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3UTR	ENST00000466470	ENST00000330675		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
intron-3UTR	ENST00000466470	ENST00000329800		TCGA	LD	BRCA	TCGA-A2-A1FW-01A	ZC3H11A	chr1	203800899	+	TMCC2	chr1	205238078	+
5CDS-5UTR	ENST00000403222	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000403222	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000403222	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000403222	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000403222	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000407373	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000407373	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000407373	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000407373	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000407373	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000332585	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000332585	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000332585	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000332585	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000332585	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000382310	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000382310	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000382310	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000382310	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000382310	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000446658	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000446658	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000446658	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000446658	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000446658	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000401475	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000401475	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000401475	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000401475	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000401475	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000437268	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000437268	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000437268	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000437268	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000437268	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000535268	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000535268	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000535268	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-5UTR	ENST00000535268	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
5CDS-intron	ENST00000535268	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
3UTR-5UTR	ENST00000496575	ENST00000396231		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
3UTR-5UTR	ENST00000496575	ENST00000262726		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
3UTR-5UTR	ENST00000496575	ENST00000358439		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
3UTR-5UTR	ENST00000496575	ENST00000356087		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
3UTR-intron	ENST00000496575	ENST00000461800		TCGA	LD	BRCA	TCGA-A2-A1G0-01A	OSBP2	chr22	31289720	+	EFCAB6	chr22	44161273	-
intron-intron	ENST00000255608	ENST00000472824		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	BTBD2	chr19	1986895	-	ISG20L2	chr1	156697060	-
intron-intron	ENST00000255608	ENST00000313146		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	BTBD2	chr19	1986895	-	ISG20L2	chr1	156697060	-
intron-intron	ENST00000255608	ENST00000368219		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	BTBD2	chr19	1986895	-	ISG20L2	chr1	156697060	-
intron-intron	ENST00000590646	ENST00000472824		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	BTBD2	chr19	1986895	-	ISG20L2	chr1	156697060	-
intron-intron	ENST00000590646	ENST00000313146		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	BTBD2	chr19	1986895	-	ISG20L2	chr1	156697060	-
intron-intron	ENST00000590646	ENST00000368219		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	BTBD2	chr19	1986895	-	ISG20L2	chr1	156697060	-
Frame-shit	ENST00000584601	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000406381	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000541774	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000445658	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000540147	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000584450	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000269571	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
intron-3CDS	ENST00000578199	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
intron-3CDS	ENST00000540042	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
intron-3CDS	ENST00000584888	ENST00000225426		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	ERBB2	chr17	37879913	+	PSMB3	chr17	36920372	+
Frame-shit	ENST00000583610	ENST00000398532		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000583610	ENST00000577454		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000583610	ENST00000578648		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000583610	ENST00000579565		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000394294	ENST00000398532		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000394294	ENST00000577454		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000394294	ENST00000578648		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000394294	ENST00000579565		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000264658	ENST00000398532		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000264658	ENST00000577454		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000264658	ENST00000578648		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000264658	ENST00000579565		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000577399	ENST00000398532		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000577399	ENST00000577454		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000577399	ENST00000578648		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
5CDS-intron	ENST00000577399	ENST00000579565		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	MSL1	chr17	38290532	+
Frame-shit	ENST00000583610	ENST00000339208		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000346661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000345615		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000502449		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000591288		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000394378		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000585472		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000583610	ENST00000588194		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000339208		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000346661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000345615		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000502449		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000591288		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000394378		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000585472		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000394294	ENST00000588194		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000339208		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000346661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000345615		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000502449		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000591288		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000394378		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000585472		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000264658	ENST00000588194		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000339208		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000346661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000345615		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000502449		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000591288		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000394378		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000585472		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000577399	ENST00000588194		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
3UTR-3CDS	ENST00000397661	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000397661	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000397661	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000397661	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000592199	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000592199	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000592199	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000592199	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587760	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587760	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587760	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587760	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000585575	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000585575	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000585575	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000585575	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000360105	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000360105	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000360105	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000360105	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588228	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588228	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588228	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588228	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587260	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587260	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587260	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000587260	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000358552	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000358552	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000358552	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
3UTR-3CDS	ENST00000358552	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588680	ENST00000225893		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588680	ENST00000561193		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588680	ENST00000560016		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000588680	ENST00000427275		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	NFIX	chr19	13206543	+	HNF1B	chr17	36070671	-
5CDS-intron	ENST00000322644	ENST00000251535		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	POLR2A	chr17	7388176	+	ALOX12	chr17	6902576	+
5CDS-intron	ENST00000572844	ENST00000251535		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	POLR2A	chr17	7388176	+	ALOX12	chr17	6902576	+
In-frame	ENST00000359139	ENST00000334018		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000359139	ENST00000404820		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000359139	ENST00000404755		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
5CDS-3UTR	ENST00000359139	ENST00000484039		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000395741	ENST00000334018		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000395741	ENST00000404820		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000395741	ENST00000404755		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
5CDS-3UTR	ENST00000395741	ENST00000484039		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000395744	ENST00000334018		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000395744	ENST00000404820		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000395744	ENST00000404755		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
5CDS-3UTR	ENST00000395744	ENST00000484039		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000216061	ENST00000334018		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000216061	ENST00000404820		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
In-frame	ENST00000216061	ENST00000404755		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
5CDS-3UTR	ENST00000216061	ENST00000484039		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	PPP6R2	chr22	50845304	+	EMID1	chr22	29627009	+
intron-3CDS	ENST00000394332	ENST00000309889		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000394332	ENST00000578283		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000394333	ENST00000309889		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000394333	ENST00000578283		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000479035	ENST00000309889		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000479035	ENST00000578283		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000245857	ENST00000309889		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000245857	ENST00000578283		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000577407	ENST00000309889		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
intron-3CDS	ENST00000577407	ENST00000578283		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	RPL23	chr17	37005910	-	TCAP	chr17	37822148	+
In-frame	ENST00000336308	ENST00000397661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000336308	ENST00000592199		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000336308	ENST00000587760		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000336308	ENST00000585575		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000336308	ENST00000360105		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000336308	ENST00000588228		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000336308	ENST00000587260		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000336308	ENST00000358552		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000336308	ENST00000588680		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000578232	ENST00000397661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000578232	ENST00000592199		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000578232	ENST00000587760		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000578232	ENST00000585575		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000578232	ENST00000360105		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-5UTR	ENST00000578232	ENST00000588228		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-5UTR	ENST00000578232	ENST00000587260		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-5UTR	ENST00000578232	ENST00000358552		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
3UTR-intron	ENST00000578232	ENST00000588680		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000544210	ENST00000397661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000544210	ENST00000592199		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000544210	ENST00000587760		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000544210	ENST00000585575		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000544210	ENST00000360105		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000544210	ENST00000588228		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000544210	ENST00000587260		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000544210	ENST00000358552		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000544210	ENST00000588680		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000394250	ENST00000397661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000394250	ENST00000592199		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000394250	ENST00000587760		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000394250	ENST00000585575		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000394250	ENST00000360105		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000394250	ENST00000588228		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000394250	ENST00000587260		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000394250	ENST00000358552		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000394250	ENST00000588680		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000580611	ENST00000397661		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000580611	ENST00000592199		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000580611	ENST00000587760		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000580611	ENST00000585575		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
In-frame	ENST00000580611	ENST00000360105		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000580611	ENST00000588228		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000580611	ENST00000587260		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000580611	ENST00000358552		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000580611	ENST00000588680		TCGA	LD	BRCA	TCGA-A2-A1G1-01A	STARD3	chr17	37810003	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000377809	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000377809	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000377809	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000402010	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000402010	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000402010	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000413835	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000413835	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000413835	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000377810	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000377810	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5UTR-intron	ENST00000377810	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000315032	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000315032	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000315032	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000508192	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000508192	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000508192	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000361128	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000361128	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000361128	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000350490	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000350490	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000350490	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000502399	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000502399	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000502399	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000509502	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000509502	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000509502	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000513765	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000513765	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000513765	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000408948	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000408948	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000408948	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000425897	ENST00000287275		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000425897	ENST00000532258		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000425897	ENST00000533636		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	MARK2	chr11	63607032	+	GLYATL2	chr11	58611997	-
5UTR-3CDS	ENST00000396113	ENST00000311351		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
5UTR-3CDS	ENST00000396113	ENST00000520755		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
5UTR-5UTR	ENST00000396113	ENST00000522515		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000286687	ENST00000311351		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000286687	ENST00000520755		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-5UTR	ENST00000286687	ENST00000522515		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000396111	ENST00000311351		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000396111	ENST00000520755		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-5UTR	ENST00000396111	ENST00000522515		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000521840	ENST00000311351		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000521840	ENST00000520755		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-5UTR	ENST00000521840	ENST00000522515		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000542894	ENST00000311351		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000542894	ENST00000520755		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-5UTR	ENST00000542894	ENST00000522515		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000396124	ENST00000311351		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-3CDS	ENST00000396124	ENST00000520755		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
intron-5UTR	ENST00000396124	ENST00000522515		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	NDUFAF6	chr8	95908155	+	LSM1	chr8	38029551	-
5CDS-3UTR	ENST00000414786	ENST00000521282		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-intron	ENST00000414786	ENST00000432471		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-intron	ENST00000414786	ENST00000287322		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-3UTR	ENST00000445220	ENST00000521282		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-intron	ENST00000445220	ENST00000432471		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-intron	ENST00000445220	ENST00000287322		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-3UTR	ENST00000262795	ENST00000521282		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-intron	ENST00000262795	ENST00000432471		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
5CDS-intron	ENST00000262795	ENST00000287322		TCGA	LD	BRCA	TCGA-A2-A1G4-01A	SHANK3	chr22	51123079	+	BAG4	chr8	38050206	+
3UTR-intron	ENST00000394818	ENST00000318698		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000394818	ENST00000566473		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000394818	ENST00000574292		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000278849	ENST00000318698		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000278849	ENST00000566473		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000278849	ENST00000574292		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000531099	ENST00000318698		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000531099	ENST00000566473		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
3UTR-intron	ENST00000531099	ENST00000574292		TCGA	LD	BRCA	TCGA-A2-A259-01A	INCENP	chr11	61920023	+	ANKFN1	chr17	54587834	+
intron-3CDS	ENST00000405402	ENST00000199936		TCGA	LD	BRCA	TCGA-A2-A25A-01A	GSE1	chr16	85667738	+	HSD17B2	chr16	82101775	+
In-frame	ENST00000253458	ENST00000199936		TCGA	LD	BRCA	TCGA-A2-A25A-01A	GSE1	chr16	85667738	+	HSD17B2	chr16	82101775	+
intron-3CDS	ENST00000393243	ENST00000199936		TCGA	LD	BRCA	TCGA-A2-A25A-01A	GSE1	chr16	85667738	+	HSD17B2	chr16	82101775	+
intron-3CDS	ENST00000471070	ENST00000199936		TCGA	LD	BRCA	TCGA-A2-A25A-01A	GSE1	chr16	85667738	+	HSD17B2	chr16	82101775	+
5CDS-intron	ENST00000373255	ENST00000462445		TCGA	LD	BRCA	TCGA-A2-A25A-01A	H2AFY2	chr10	71851710	+	SRGN	chr10	70856840	+
5CDS-intron	ENST00000373255	ENST00000242465		TCGA	LD	BRCA	TCGA-A2-A25A-01A	H2AFY2	chr10	71851710	+	SRGN	chr10	70856840	+
intron-3CDS	ENST00000409484	ENST00000303735		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
intron-3CDS	ENST00000409484	ENST00000409149		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
intron-3CDS	ENST00000409484	ENST00000409058		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
intron-3CDS	ENST00000409484	ENST00000409662		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
intron-5UTR	ENST00000409484	ENST00000493887		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
3UTR-3CDS	ENST00000468308	ENST00000303735		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
3UTR-3CDS	ENST00000468308	ENST00000409149		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
3UTR-3CDS	ENST00000468308	ENST00000409058		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
3UTR-3CDS	ENST00000468308	ENST00000409662		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
3UTR-5UTR	ENST00000468308	ENST00000493887		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000321348	ENST00000303735		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000321348	ENST00000409149		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000321348	ENST00000409058		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000321348	ENST00000409662		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000321348	ENST00000493887		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375252	ENST00000303735		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375252	ENST00000409149		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375252	ENST00000409058		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375252	ENST00000409662		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000375252	ENST00000493887		TCGA	LD	BRCA	TCGA-A2-A25B-01A	CYBRD1	chr2	172379248	+	SLC38A11	chr2	165772483	-
5UTR-5UTR	ENST00000487070	ENST00000368003		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000487070	ENST00000473766		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000431828	ENST00000368003		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-intron	ENST00000431828	ENST00000473766		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000599854	ENST00000368003		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-intron	ENST00000599854	ENST00000473766		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000441706	ENST00000368003		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-intron	ENST00000441706	ENST00000473766		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000440133	ENST00000368003		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
5CDS-intron	ENST00000440133	ENST00000473766		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
intron-5UTR	ENST00000435669	ENST00000368003		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
intron-intron	ENST00000435669	ENST00000473766		TCGA	LD	BRCA	TCGA-A2-A25B-01A	KANSL3	chr2	97274245	-	UFC1	chr1	161123716	+
Frame-shit	ENST00000404260	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000404260	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
5CDS-3UTR	ENST00000404260	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000403625	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000403625	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
5CDS-3UTR	ENST00000403625	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000406374	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000406374	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3UTR	ENST00000406374	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000406039	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000406039	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3UTR	ENST00000406039	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000478569	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000478569	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3UTR	ENST00000478569	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000490016	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000490016	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3UTR	ENST00000490016	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000403666	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000403666	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
5CDS-3UTR	ENST00000403666	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000405643	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000405643	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
5CDS-3UTR	ENST00000405643	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000261569	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
Frame-shit	ENST00000261569	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
5CDS-3UTR	ENST00000261569	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000407621	ENST00000380985		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000407621	ENST00000502464		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3UTR	ENST00000407621	ENST00000515595		TCGA	LD	BRCA	TCGA-A2-A25B-01A	MAST4	chr5	66449408	+	NLN	chr5	65118609	+
intron-3CDS	ENST00000540900	ENST00000394859		TCGA	LD	BRCA	TCGA-A2-A25B-01A	NSRP1	chr17	28445191	+	ANKRD13B	chr17	27934760	+
In-frame	ENST00000584423	ENST00000394859		TCGA	LD	BRCA	TCGA-A2-A25B-01A	NSRP1	chr17	28445191	+	ANKRD13B	chr17	27934760	+
In-frame	ENST00000247026	ENST00000394859		TCGA	LD	BRCA	TCGA-A2-A25B-01A	NSRP1	chr17	28445191	+	ANKRD13B	chr17	27934760	+
3UTR-3CDS	ENST00000479218	ENST00000394859		TCGA	LD	BRCA	TCGA-A2-A25B-01A	NSRP1	chr17	28445191	+	ANKRD13B	chr17	27934760	+
Frame-shit	ENST00000580974	ENST00000335221		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000580974	ENST00000321892		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000580974	ENST00000306378		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000580974	ENST00000424123		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
5CDS-intron	ENST00000580974	ENST00000577770		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000299954	ENST00000335221		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000299954	ENST00000321892		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000299954	ENST00000306378		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000299954	ENST00000424123		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
5CDS-intron	ENST00000299954	ENST00000577770		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000335257	ENST00000335221		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000335257	ENST00000321892		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000335257	ENST00000306378		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000335257	ENST00000424123		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
5CDS-intron	ENST00000335257	ENST00000577770		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000581322	ENST00000335221		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000581322	ENST00000321892		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000581322	ENST00000306378		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
Frame-shit	ENST00000581322	ENST00000424123		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
5CDS-intron	ENST00000581322	ENST00000577770		TCGA	LD	BRCA	TCGA-A2-A25B-01A	PITPNC1	chr17	65574373	+	BPTF	chr17	65914830	+
In-frame	ENST00000408982	ENST00000456349		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000408982	ENST00000263080		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000262477	ENST00000456349		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000262477	ENST00000263080		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000537505	ENST00000456349		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000537505	ENST00000263080		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000546142	ENST00000456349		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000546142	ENST00000263080		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000341923	ENST00000456349		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
In-frame	ENST00000341923	ENST00000263080		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
intron-3CDS	ENST00000570487	ENST00000456349		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
intron-3CDS	ENST00000570487	ENST00000263080		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RABEP1	chr17	5185815	+	ASPA	chr17	3397644	+
5CDS-intron	ENST00000375436	ENST00000375453		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
5CDS-intron	ENST00000375436	ENST00000375448		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
5CDS-3UTR	ENST00000375436	ENST00000487048		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
intron-intron	ENST00000474892	ENST00000375453		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
intron-intron	ENST00000474892	ENST00000375448		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
intron-3UTR	ENST00000474892	ENST00000487048		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
5CDS-intron	ENST00000375433	ENST00000375453		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
5CDS-intron	ENST00000375433	ENST00000375448		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
5CDS-3UTR	ENST00000375433	ENST00000487048		TCGA	LD	BRCA	TCGA-A2-A25B-01A	RCC2	chr1	17755602	-	PADI4	chr1	17681028	+
intron-3CDS	ENST00000545472	ENST00000446828		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000545472	ENST00000424227		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000545472	ENST00000443863		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000545472	ENST00000535426		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000545472	ENST00000265026		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-intron	ENST00000545472	ENST00000448876		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-intron	ENST00000545472	ENST00000454237		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-intron	ENST00000545472	ENST00000438798		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
In-frame	ENST00000296257	ENST00000446828		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
In-frame	ENST00000296257	ENST00000424227		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
In-frame	ENST00000296257	ENST00000443863		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
In-frame	ENST00000296257	ENST00000535426		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
In-frame	ENST00000296257	ENST00000265026		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5CDS-intron	ENST00000296257	ENST00000448876		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5CDS-intron	ENST00000296257	ENST00000454237		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5CDS-intron	ENST00000296257	ENST00000438798		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-3CDS	ENST00000427465	ENST00000446828		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-3CDS	ENST00000427465	ENST00000424227		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-3CDS	ENST00000427465	ENST00000443863		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-3CDS	ENST00000427465	ENST00000535426		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-3CDS	ENST00000427465	ENST00000265026		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-intron	ENST00000427465	ENST00000448876		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-intron	ENST00000427465	ENST00000454237		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5UTR-intron	ENST00000427465	ENST00000438798		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000465201	ENST00000446828		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000465201	ENST00000424227		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000465201	ENST00000443863		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000465201	ENST00000535426		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-3CDS	ENST00000465201	ENST00000265026		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-intron	ENST00000465201	ENST00000448876		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-intron	ENST00000465201	ENST00000454237		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
intron-intron	ENST00000465201	ENST00000438798		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SENP2	chr3	185304302	+	MAP3K13	chr3	185190763	+
5CDS-intron	ENST00000303735	ENST00000367689		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000303735	ENST00000357444		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000303735	ENST00000251507		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000303735	ENST00000325589		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000367686		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000367687		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000347255		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000489615		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000478442		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000486220		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000303735	ENST00000392064		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000303735	ENST00000367688		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409149	ENST00000367689		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409149	ENST00000357444		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409149	ENST00000251507		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409149	ENST00000325589		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000367686		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000367687		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000347255		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000489615		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000478442		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000486220		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409149	ENST00000392064		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409149	ENST00000367688		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409058	ENST00000367689		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409058	ENST00000357444		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409058	ENST00000251507		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409058	ENST00000325589		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000367686		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000367687		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000347255		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000489615		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000478442		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000486220		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409058	ENST00000392064		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409058	ENST00000367688		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409662	ENST00000367689		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409662	ENST00000357444		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409662	ENST00000251507		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409662	ENST00000325589		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000367686		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000367687		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000347255		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000489615		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000478442		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000486220		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-3UTR	ENST00000409662	ENST00000392064		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
5CDS-intron	ENST00000409662	ENST00000367688		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000493887	ENST00000367689		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000493887	ENST00000357444		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000493887	ENST00000251507		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000493887	ENST00000325589		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000367686		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000367687		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000347255		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000489615		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000478442		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000486220		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3UTR	ENST00000493887	ENST00000392064		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-intron	ENST00000493887	ENST00000367688		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SLC38A11	chr2	165765150	-	RABGAP1L	chr1	174926594	+
intron-3CDS	ENST00000544865	ENST00000335263		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000424963		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000322340		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000544865	ENST00000499851		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000544865	ENST00000342702		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000556807		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000558567		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000299135		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000454394		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000544865	ENST00000556511		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3UTR	ENST00000544865	ENST00000557186		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000544865	ENST00000545563		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
In-frame	ENST00000263073	ENST00000335263		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000424963		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000322340		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000263073	ENST00000499851		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000263073	ENST00000342702		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000556807		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000558567		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000299135		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000454394		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-intron	ENST00000263073	ENST00000556511		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000263073	ENST00000557186		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000263073	ENST00000545563		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3CDS	ENST00000354901	ENST00000335263		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000424963		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000322340		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000354901	ENST00000499851		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000354901	ENST00000342702		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000556807		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000558567		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000299135		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000454394		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000354901	ENST00000556511		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3UTR	ENST00000354901	ENST00000557186		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000354901	ENST00000545563		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3CDS	ENST00000536871	ENST00000335263		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000424963		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000322340		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000536871	ENST00000499851		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000536871	ENST00000342702		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000556807		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000558567		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000299135		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000454394		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000536871	ENST00000556511		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3UTR	ENST00000536871	ENST00000557186		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000536871	ENST00000545563		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3CDS	ENST00000573166	ENST00000335263		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000424963		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000322340		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000573166	ENST00000499851		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000573166	ENST00000342702		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000556807		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000558567		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000299135		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000454394		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-intron	ENST00000573166	ENST00000556511		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-3UTR	ENST00000573166	ENST00000557186		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
intron-5UTR	ENST00000573166	ENST00000545563		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SMG6	chr17	2206927	-	WDR20	chr14	102661275	+
In-frame	ENST00000321765	ENST00000261714		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SPAG5	chr17	26925528	-	BLMH	chr17	28576186	-
Frame-shit	ENST00000321765	ENST00000394819		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SPAG5	chr17	26925528	-	BLMH	chr17	28576186	-
5CDS-intron	ENST00000321765	ENST00000582669		TCGA	LD	BRCA	TCGA-A2-A25B-01A	SPAG5	chr17	26925528	-	BLMH	chr17	28576186	-
5UTR-3CDS	ENST00000218089	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3UTR	ENST00000218089	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3UTR	ENST00000218089	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3UTR	ENST00000218089	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
3UTR-3CDS	ENST00000469481	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
3UTR-3UTR	ENST00000469481	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
3UTR-3UTR	ENST00000469481	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
3UTR-3UTR	ENST00000469481	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3CDS	ENST00000354548	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3UTR	ENST00000354548	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3UTR	ENST00000354548	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5UTR-3UTR	ENST00000354548	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3CDS	ENST00000371160	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371160	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371160	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371160	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3CDS	ENST00000371157	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371157	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371157	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371157	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3CDS	ENST00000371145	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371145	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371145	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371145	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3CDS	ENST00000371144	ENST00000434753		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371144	ENST00000468691		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371144	ENST00000371199		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
intron-3UTR	ENST00000371144	ENST00000355640		TCGA	LD	BRCA	TCGA-A2-A25B-01A	STAG2	chrX	123094716	+	XIAP	chrX	123034343	+
5CDS-intron	ENST00000542802	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5CDS-intron	ENST00000542802	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5CDS-intron	ENST00000312010	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5CDS-intron	ENST00000312010	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5CDS-intron	ENST00000449938	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5CDS-intron	ENST00000449938	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5UTR-intron	ENST00000588467	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5UTR-intron	ENST00000588467	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
intron-intron	ENST00000589424	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
intron-intron	ENST00000589424	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
intron-intron	ENST00000590546	ENST00000316020		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
intron-intron	ENST00000590546	ENST00000472329		TCGA	LD	BRCA	TCGA-A2-A25B-01A	USP36	chr17	76808942	-	OFCC1	chr6	9705675	-
5CDS-5UTR	ENST00000427025	ENST00000424834		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000427025	ENST00000382108		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000427025	ENST00000382095		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000427025	ENST00000474317		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000427025	ENST00000399949		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000427025	ENST00000409126		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000427025	ENST00000343003		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000343505	ENST00000424834		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000343505	ENST00000382108		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000343505	ENST00000382095		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000343505	ENST00000474317		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000343505	ENST00000399949		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000343505	ENST00000409126		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000343505	ENST00000343003		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-5UTR	ENST00000479393	ENST00000424834		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-5UTR	ENST00000479393	ENST00000382108		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000479393	ENST00000382095		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000479393	ENST00000474317		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000479393	ENST00000399949		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000479393	ENST00000409126		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000479393	ENST00000343003		TCGA	LD	BRCA	TCGA-A2-A25C-01A	NHSL1	chr6	138817356	-	SPATA13	chr13	24796957	+
In-frame	ENST00000438045	ENST00000540320		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000438045	ENST00000400445		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000438045	ENST00000310336		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000438045	ENST00000379939		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000438045	ENST00000537702		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000438045	ENST00000379922		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000438045	ENST00000461581		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000248633	ENST00000540320		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000248633	ENST00000400445		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000248633	ENST00000310336		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000248633	ENST00000379939		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000248633	ENST00000537702		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000248633	ENST00000379922		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000248633	ENST00000461581		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000428214	ENST00000540320		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000428214	ENST00000400445		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000428214	ENST00000310336		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
In-frame	ENST00000428214	ENST00000379939		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000428214	ENST00000537702		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000428214	ENST00000379922		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-intron	ENST00000428214	ENST00000461581		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-3CDS	ENST00000541751	ENST00000540320		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-3CDS	ENST00000541751	ENST00000400445		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-3CDS	ENST00000541751	ENST00000310336		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-3CDS	ENST00000541751	ENST00000379939		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-intron	ENST00000541751	ENST00000537702		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-intron	ENST00000541751	ENST00000379922		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
3UTR-intron	ENST00000541751	ENST00000461581		TCGA	LD	BRCA	TCGA-A2-A25C-01A	PEX1	chr7	92129018	-	NBEA	chr13	35615070	+
5CDS-3UTR	ENST00000370902	ENST00000263054		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370902	ENST00000369698		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370902	ENST00000344440		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370902	ENST00000478809		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-3UTR	ENST00000370886	ENST00000263054		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370886	ENST00000369698		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370886	ENST00000344440		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370886	ENST00000478809		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-3UTR	ENST00000370885	ENST00000263054		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370885	ENST00000369698		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370885	ENST00000344440		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000370885	ENST00000478809		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
intron-3UTR	ENST00000485122	ENST00000263054		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
intron-intron	ENST00000485122	ENST00000369698		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
intron-intron	ENST00000485122	ENST00000344440		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
intron-intron	ENST00000485122	ENST00000478809		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5UTR-3UTR	ENST00000471049	ENST00000263054		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5UTR-intron	ENST00000471049	ENST00000369698		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5UTR-intron	ENST00000471049	ENST00000344440		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5UTR-intron	ENST00000471049	ENST00000478809		TCGA	LD	BRCA	TCGA-A2-A25D-01A	EXOSC1	chr10	99196948	-	SORCS1	chr10	108333939	-
5CDS-intron	ENST00000380502	ENST00000494753		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380502	ENST00000411567		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380502	ENST00000276914		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380502	ENST00000380465		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380502	ENST00000380464		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380496	ENST00000494753		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380496	ENST00000411567		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380496	ENST00000276914		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380496	ENST00000380465		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
5CDS-intron	ENST00000380496	ENST00000380464		TCGA	LD	BRCA	TCGA-A2-A25D-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19108745	-
Frame-shit	ENST00000406337	ENST00000347528		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
Frame-shit	ENST00000406337	ENST00000289734		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
Frame-shit	ENST00000406337	ENST00000379758		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
Frame-shit	ENST00000406337	ENST00000396942		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
Frame-shit	ENST00000406337	ENST00000396945		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
Frame-shit	ENST00000406337	ENST00000352337		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
Frame-shit	ENST00000406337	ENST00000265709		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000406337	ENST00000457297		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000406337	ENST00000522231		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000406337	ENST00000522543		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000406337	ENST00000314214		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000406337	ENST00000521407		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000347528		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000289734		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000379758		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000396942		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000396945		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000352337		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000265713	ENST00000265709		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000265713	ENST00000457297		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000265713	ENST00000522231		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000265713	ENST00000522543		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000265713	ENST00000314214		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000265713	ENST00000521407		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000347528		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000289734		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000379758		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000396942		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000396945		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000352337		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000396930	ENST00000265709		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000396930	ENST00000457297		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000396930	ENST00000522231		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000396930	ENST00000522543		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000396930	ENST00000314214		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000396930	ENST00000521407		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000347528		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000289734		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000379758		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000396942		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000396945		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000352337		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
In-frame	ENST00000485568	ENST00000265709		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000485568	ENST00000457297		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000485568	ENST00000522231		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000485568	ENST00000522543		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000485568	ENST00000314214		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5CDS-intron	ENST00000485568	ENST00000521407		TCGA	LD	BRCA	TCGA-A2-A25D-01A	KAT6A	chr8	41905896	-	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000316316	ENST00000352896		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316316	ENST00000368475		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316316	ENST00000338891		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316316	ENST00000521531		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-intron	ENST00000316316	ENST00000522284		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000505485	ENST00000352896		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000505485	ENST00000368475		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000505485	ENST00000338891		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000505485	ENST00000521531		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
intron-intron	ENST00000505485	ENST00000522284		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316068	ENST00000352896		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316068	ENST00000368475		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316068	ENST00000338891		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000316068	ENST00000521531		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
5UTR-intron	ENST00000316068	ENST00000522284		TCGA	LD	BRCA	TCGA-A2-A25D-01A	MCM9	chr6	119256056	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000389327	ENST00000519067		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389327	ENST00000433583		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389327	ENST00000517878		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389327	ENST00000024061		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
5CDS-intron	ENST00000389327	ENST00000521804		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389328	ENST00000519067		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389328	ENST00000433583		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389328	ENST00000517878		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000389328	ENST00000024061		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
5CDS-intron	ENST00000389328	ENST00000521804		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000438773	ENST00000519067		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000438773	ENST00000433583		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000438773	ENST00000517878		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000438773	ENST00000024061		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
5CDS-intron	ENST00000438773	ENST00000521804		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
intron-3CDS	ENST00000522504	ENST00000519067		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
intron-3CDS	ENST00000522504	ENST00000433583		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
intron-3CDS	ENST00000522504	ENST00000517878		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
intron-3CDS	ENST00000522504	ENST00000024061		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
intron-intron	ENST00000522504	ENST00000521804		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TRAPPC9	chr8	141407719	-	SLC45A4	chr8	142229928	-
Frame-shit	ENST00000359626	ENST00000304842		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TYW1	chr7	66520874	+	TPST1	chr7	65751498	+
5CDS-3UTR	ENST00000359626	ENST00000480281		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TYW1	chr7	66520874	+	TPST1	chr7	65751498	+
intron-3CDS	ENST00000491969	ENST00000304842		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TYW1	chr7	66520874	+	TPST1	chr7	65751498	+
intron-3UTR	ENST00000491969	ENST00000480281		TCGA	LD	BRCA	TCGA-A2-A25E-01A	TYW1	chr7	66520874	+	TPST1	chr7	65751498	+
Frame-shit	ENST00000529225	ENST00000528125		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
Frame-shit	ENST00000529225	ENST00000260276		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
Frame-shit	ENST00000529225	ENST00000530214		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
In-frame	ENST00000529225	ENST00000529270		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000440460	ENST00000528125		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000440460	ENST00000260276		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000440460	ENST00000530214		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000440460	ENST00000529270		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000389821	ENST00000528125		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000389821	ENST00000260276		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000389821	ENST00000530214		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000389821	ENST00000529270		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000531396	ENST00000528125		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000531396	ENST00000260276		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000531396	ENST00000530214		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000531396	ENST00000529270		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000315253	ENST00000528125		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000315253	ENST00000260276		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000315253	ENST00000530214		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
intron-3CDS	ENST00000315253	ENST00000529270		TCGA	LD	BRCA	TCGA-A2-A25F-01A	DIXDC1	chr11	111800634	+	C11orf1	chr11	111754495	+
In-frame	ENST00000517956	ENST00000262219		TCGA	LD	BRCA	TCGA-A2-A25F-01A	FBXO32	chr8	124518632	-	ANXA13	chr8	124724993	-
In-frame	ENST00000517956	ENST00000419625		TCGA	LD	BRCA	TCGA-A2-A25F-01A	FBXO32	chr8	124518632	-	ANXA13	chr8	124724993	-
5CDS-intron	ENST00000517956	ENST00000519045		TCGA	LD	BRCA	TCGA-A2-A25F-01A	FBXO32	chr8	124518632	-	ANXA13	chr8	124724993	-
In-frame	ENST00000443022	ENST00000262219		TCGA	LD	BRCA	TCGA-A2-A25F-01A	FBXO32	chr8	124518632	-	ANXA13	chr8	124724993	-
In-frame	ENST00000443022	ENST00000419625		TCGA	LD	BRCA	TCGA-A2-A25F-01A	FBXO32	chr8	124518632	-	ANXA13	chr8	124724993	-
5CDS-intron	ENST00000443022	ENST00000519045		TCGA	LD	BRCA	TCGA-A2-A25F-01A	FBXO32	chr8	124518632	-	ANXA13	chr8	124724993	-
Frame-shit	ENST00000424085	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000424085	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000424085	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000257075	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000257075	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000257075	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000373747	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000373747	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373747	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000426105	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000426105	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000426105	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000440538	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000440538	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000440538	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373741	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373741	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373741	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000423018	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000423018	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000423018	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373742	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373742	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373742	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000336798		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000339394		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000490546	ENST00000471567		TCGA	LD	BRCA	TCGA-A2-A25F-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000425528	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000425528	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000425528	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000425528	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000425528	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-3CDS	ENST00000441499	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000441499	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000441499	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000441499	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000441499	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-3CDS	ENST00000356861	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000356861	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000356861	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000356861	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000356861	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-3CDS	ENST00000450764	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000450764	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000450764	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000450764	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000450764	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-3CDS	ENST00000592287	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000592287	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000592287	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000592287	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000592287	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-3CDS	ENST00000588216	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000588216	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000588216	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000588216	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
intron-5UTR	ENST00000588216	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-3CDS	ENST00000589956	ENST00000592204		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000589956	ENST00000393233		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000589956	ENST00000589272		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000589956	ENST00000322912		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
5UTR-5UTR	ENST00000589956	ENST00000458671		TCGA	LD	BRCA	TCGA-A2-A25F-01A	TNPO2	chr19	12833291	-	RTBDN	chr19	12940811	-
In-frame	ENST00000267202	ENST00000267199		TCGA	LD	BRCA	TCGA-A2-A25F-01A	VPS37B	chr12	123380499	-	VPS33A	chr12	122727055	-
5CDS-intron	ENST00000267202	ENST00000542310		TCGA	LD	BRCA	TCGA-A2-A25F-01A	VPS37B	chr12	123380499	-	VPS33A	chr12	122727055	-
5CDS-intron	ENST00000267202	ENST00000451053		TCGA	LD	BRCA	TCGA-A2-A25F-01A	VPS37B	chr12	123380499	-	VPS33A	chr12	122727055	-
5CDS-5UTR	ENST00000263674	ENST00000355693		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000263674	ENST00000545127		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000263674	ENST00000541455		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000263674	ENST00000537289		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
5CDS-intron	ENST00000263674	ENST00000537581		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
intron-5UTR	ENST00000536170	ENST00000355693		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
intron-5UTR	ENST00000536170	ENST00000545127		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
intron-5UTR	ENST00000536170	ENST00000541455		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
intron-5UTR	ENST00000536170	ENST00000537289		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
intron-intron	ENST00000536170	ENST00000537581		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	ARHGEF17	chr11	73022875	+	COA4	chr11	73584439	-
In-frame	ENST00000232766	ENST00000457573		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
In-frame	ENST00000232766	ENST00000341333		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
In-frame	ENST00000232766	ENST00000415259		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
In-frame	ENST00000232766	ENST00000395057		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
In-frame	ENST00000232766	ENST00000416589		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5CDS-3UTR	ENST00000232766	ENST00000463857		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5UTR-3CDS	ENST00000455924	ENST00000457573		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5UTR-3CDS	ENST00000455924	ENST00000341333		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5UTR-3CDS	ENST00000455924	ENST00000415259		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5UTR-3CDS	ENST00000455924	ENST00000395057		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5UTR-3CDS	ENST00000455924	ENST00000416589		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5UTR-3UTR	ENST00000455924	ENST00000463857		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
3UTR-3CDS	ENST00000483201	ENST00000457573		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
3UTR-3CDS	ENST00000483201	ENST00000341333		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
3UTR-3CDS	ENST00000483201	ENST00000415259		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
3UTR-3CDS	ENST00000483201	ENST00000395057		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
3UTR-3CDS	ENST00000483201	ENST00000416589		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
3UTR-3UTR	ENST00000483201	ENST00000463857		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	KLHL18	chr3	47324584	+	TEX264	chr3	51718429	+
5CDS-5UTR	ENST00000531188	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000531188	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000530164	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000530164	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000278572	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000278572	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
intron-5UTR	ENST00000534440	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
intron-5UTR	ENST00000534440	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000527446	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000527446	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000526608	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000526608	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000524851	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000524851	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
3UTR-5UTR	ENST00000529285	ENST00000333090		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
3UTR-5UTR	ENST00000529285	ENST00000527881		TCGA	LD	BRCA	TCGA-A2-A3KC-01A	RPS3	chr11	75113490	+	TSKU	chr11	76506653	+
In-frame	ENST00000255764	ENST00000361961		TCGA	LD	BRCA	TCGA-A2-A3XS-01A	MED10	chr5	6377279	-	KIF21A	chr12	39752175	-
In-frame	ENST00000255764	ENST00000395670		TCGA	LD	BRCA	TCGA-A2-A3XS-01A	MED10	chr5	6377279	-	KIF21A	chr12	39752175	-
In-frame	ENST00000255764	ENST00000544797		TCGA	LD	BRCA	TCGA-A2-A3XS-01A	MED10	chr5	6377279	-	KIF21A	chr12	39752175	-
In-frame	ENST00000255764	ENST00000361418		TCGA	LD	BRCA	TCGA-A2-A3XS-01A	MED10	chr5	6377279	-	KIF21A	chr12	39752175	-
In-frame	ENST00000255764	ENST00000541463		TCGA	LD	BRCA	TCGA-A2-A3XS-01A	MED10	chr5	6377279	-	KIF21A	chr12	39752175	-
5CDS-intron	ENST00000255764	ENST00000547745		TCGA	LD	BRCA	TCGA-A2-A3XS-01A	MED10	chr5	6377279	-	KIF21A	chr12	39752175	-
In-frame	ENST00000283558	ENST00000375608		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000283558	ENST00000442652		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000283558	ENST00000375604		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000283558	ENST00000397030		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000283558	ENST00000535094		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000283558	ENST00000421756		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000283558	ENST00000375601		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000397036		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000434480		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000423482		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000375597		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000397024		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000480321		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000283558	ENST00000397021		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000375608		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000442652		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000375604		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000397030		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000535094		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000421756		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375630	ENST00000375601		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000397036		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000434480		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000423482		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000375597		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000397024		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000480321		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375630	ENST00000397021		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000375608		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000442652		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000375604		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000397030		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000535094		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000421756		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000487903	ENST00000375601		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000397036		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000434480		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000423482		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000375597		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000397024		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000480321		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000487903	ENST00000397021		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000375608		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000442652		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000375604		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000397030		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000535094		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000421756		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
In-frame	ENST00000375645	ENST00000375601		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000397036		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000434480		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000423482		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000375597		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000397024		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000480321		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-intron	ENST00000375645	ENST00000397021		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000375608		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000442652		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000375604		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000397030		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000535094		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000421756		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-3CDS	ENST00000419448	ENST00000375601		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000397036		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000434480		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000423482		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000375597		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000397024		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000480321		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
intron-intron	ENST00000419448	ENST00000397021		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113728758	+
5CDS-5UTR	ENST00000299957	ENST00000260327		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000299957	ENST00000396780		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000299957	ENST00000558966		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-intron	ENST00000299957	ENST00000558373		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-intron	ENST00000299957	ENST00000561189		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000360824	ENST00000260327		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000360824	ENST00000396780		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000360824	ENST00000558966		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-intron	ENST00000360824	ENST00000558373		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-intron	ENST00000360824	ENST00000561189		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000345795	ENST00000260327		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000345795	ENST00000396780		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000345795	ENST00000558966		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-intron	ENST00000345795	ENST00000558373		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-intron	ENST00000345795	ENST00000561189		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
3UTR-5UTR	ENST00000429162	ENST00000260327		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
3UTR-5UTR	ENST00000429162	ENST00000396780		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
3UTR-5UTR	ENST00000429162	ENST00000558966		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
3UTR-intron	ENST00000429162	ENST00000558373		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
3UTR-intron	ENST00000429162	ENST00000561189		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CASC4	chr15	44581554	+	CTDSPL2	chr15	44751189	+
5CDS-5UTR	ENST00000412460	ENST00000216639		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CSPP1	chr8	68049838	+	VRK1	chr14	97299804	+
5CDS-intron	ENST00000412460	ENST00000555067		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CSPP1	chr8	68049838	+	VRK1	chr14	97299804	+
5CDS-5UTR	ENST00000262210	ENST00000216639		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CSPP1	chr8	68049838	+	VRK1	chr14	97299804	+
5CDS-intron	ENST00000262210	ENST00000555067		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CSPP1	chr8	68049838	+	VRK1	chr14	97299804	+
intron-5UTR	ENST00000521168	ENST00000216639		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CSPP1	chr8	68049838	+	VRK1	chr14	97299804	+
intron-intron	ENST00000521168	ENST00000555067		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	CSPP1	chr8	68049838	+	VRK1	chr14	97299804	+
Frame-shit	ENST00000306185	ENST00000522208		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	MRPL13	chr8	121426230	-	RNF130	chr5	179467647	-
Frame-shit	ENST00000306185	ENST00000521389		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	MRPL13	chr8	121426230	-	RNF130	chr5	179467647	-
Frame-shit	ENST00000306185	ENST00000261947		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	MRPL13	chr8	121426230	-	RNF130	chr5	179467647	-
5CDS-intron	ENST00000306185	ENST00000520564		TCGA	LD	BRCA	TCGA-A2-A3XT-01A	MRPL13	chr8	121426230	-	RNF130	chr5	179467647	-
Frame-shit	ENST00000397843	ENST00000286953		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000397843	ENST00000554880		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000397843	ENST00000555030		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000397843	ENST00000414262		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000397843	ENST00000553430		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000397843	ENST00000557040		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000397843	ENST00000553449		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000397843	ENST00000554713		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000356641	ENST00000286953		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000356641	ENST00000554880		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000356641	ENST00000555030		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000356641	ENST00000414262		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000356641	ENST00000553430		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000356641	ENST00000557040		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000356641	ENST00000553449		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000356641	ENST00000554713		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000532993	ENST00000286953		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000532993	ENST00000554880		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000532993	ENST00000555030		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000532993	ENST00000414262		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000532993	ENST00000553430		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
Frame-shit	ENST00000532993	ENST00000557040		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000532993	ENST00000553449		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000532993	ENST00000554713		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	ARHGEF12	chr11	120346216	+	C14orf2	chr14	104381526	-
5CDS-3UTR	ENST00000552285	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000552285	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000552285	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000315970	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000315970	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000315970	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000439210	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000439210	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000439210	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000389146	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000389146	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000389146	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000413095	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000413095	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000413095	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000551035	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000551035	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000551035	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000435406	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000435406	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000435406	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000257966	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000257966	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000257966	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000389142	ENST00000547990		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000389142	ENST00000546809		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000389142	ENST00000308796		TCGA	LD	BRCA	TCGA-A2-A3XV-01A	OS9	chr12	58112965	+	MUCL1	chr12	55250554	+
Frame-shit	ENST00000298288	ENST00000545908		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
Frame-shit	ENST00000298288	ENST00000216605		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
5CDS-intron	ENST00000298288	ENST00000556284		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-3CDS	ENST00000318317	ENST00000545908		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-3CDS	ENST00000318317	ENST00000216605		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-intron	ENST00000318317	ENST00000556284		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-3CDS	ENST00000557531	ENST00000545908		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-3CDS	ENST00000557531	ENST00000216605		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-intron	ENST00000557531	ENST00000556284		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	LRR1	chr14	50074839	+	MTHFD1	chr14	64882076	+
intron-3CDS	ENST00000422090	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000422090	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000422090	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000422090	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000422090	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000422090	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000422090	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-intron	ENST00000422090	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-intron	ENST00000422090	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000413454	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-intron	ENST00000413454	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-intron	ENST00000413454	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000352066	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000352066	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000352066	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597029	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000597029	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000597029	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000597723	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000597723	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000597723	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000596217	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000596217	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000596217	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000359125		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000357249		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000359689		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000354587		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000360480		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000370224		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-3CDS	ENST00000600583	ENST00000344462		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000600583	ENST00000482957		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
5UTR-intron	ENST00000600583	ENST00000344425		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	NUP62	chr19	50430951	-	KCNQ2	chr20	62076717	-
intron-3CDS	ENST00000439951	ENST00000238561		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000439951	ENST00000341211		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-intron	ENST00000439951	ENST00000556560		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000313733	ENST00000238561		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000313733	ENST00000341211		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-intron	ENST00000313733	ENST00000556560		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000358053	ENST00000238561		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000358053	ENST00000341211		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-intron	ENST00000358053	ENST00000556560		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000471817	ENST00000238561		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-3CDS	ENST00000471817	ENST00000341211		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
intron-intron	ENST00000471817	ENST00000556560		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL2	chr20	60860964	+	ADCK1	chr14	78285440	+
5CDS-5UTR	ENST00000263650	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000263650	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000263650	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000263650	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000389989	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000389989	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000389989	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000389989	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000525498	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000525498	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000525498	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000525498	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5UTR-5UTR	ENST00000542243	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5UTR-5UTR	ENST00000542243	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5UTR-5UTR	ENST00000542243	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5UTR-5UTR	ENST00000542243	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000348039	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000348039	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000348039	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000348039	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000478260	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000478260	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000478260	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000478260	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000528124	ENST00000351018		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000528124	ENST00000396979		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000528124	ENST00000396978		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000528124	ENST00000533217		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	OSBPL5	chr11	3147703	-	RHOG	chr11	3849436	-
Frame-shit	ENST00000247182	ENST00000524790		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
Frame-shit	ENST00000247182	ENST00000299498		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
5CDS-5UTR	ENST00000247182	ENST00000528585		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
5CDS-5UTR	ENST00000247182	ENST00000533558		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
5CDS-5UTR	ENST00000247182	ENST00000299497		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
intron-3CDS	ENST00000554986	ENST00000524790		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
intron-3CDS	ENST00000554986	ENST00000299498		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
intron-5UTR	ENST00000554986	ENST00000528585		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
intron-5UTR	ENST00000554986	ENST00000533558		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
intron-5UTR	ENST00000554986	ENST00000299497		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	SIX1	chr14	61115348	-	CYB5R2	chr11	7689792	-
5UTR-5UTR	ENST00000371828	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
intron-5UTR	ENST00000371802	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
5UTR-5UTR	ENST00000371856	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
intron-5UTR	ENST00000347458	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
5UTR-5UTR	ENST00000340954	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
intron-5UTR	ENST00000371792	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
5UTR-5UTR	ENST00000360426	ENST00000539258		TCGA	LD	BRCA	TCGA-A2-A3XW-01A	STAU1	chr20	47790732	-	GPHB5	chr14	63779830	-
5CDS-3UTR	ENST00000371477	ENST00000433182		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	CDC5L	chr6	44394461	+	E2F3-IT1	chr6	20440188	+
intron-3CDS	ENST00000346618	ENST00000257787		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	E2F3	chr6	20404063	+	AKIRIN2	chr6	88391481	-
intron-intron	ENST00000346618	ENST00000420494		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	E2F3	chr6	20404063	+	AKIRIN2	chr6	88391481	-
Frame-shit	ENST00000535432	ENST00000257787		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	E2F3	chr6	20404063	+	AKIRIN2	chr6	88391481	-
5CDS-intron	ENST00000535432	ENST00000420494		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	E2F3	chr6	20404063	+	AKIRIN2	chr6	88391481	-
3UTR-intron	ENST00000493763	ENST00000347162		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000493763	ENST00000453940		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000493763	ENST00000458460		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000493763	ENST00000259708		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000493763	ENST00000479388		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000493763	ENST00000394056		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000493763	ENST00000394058		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000347162		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000453940		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000458460		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000259708		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000479388		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000394056		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000397415	ENST00000394058		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000347162		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000453940		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000458460		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000259708		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000479388		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000394056		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000304734	ENST00000394058		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000347162		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000453940		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000458460		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000259708		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000479388		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000394056		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
3UTR-intron	ENST00000424341	ENST00000394058		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000347162		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000453940		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000458460		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000259708		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000479388		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000394056		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
intron-intron	ENST00000602561	ENST00000394058		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	RPL7L1	chr6	42854208	+	KLC4	chr6	43010796	+
5UTR-3CDS	ENST00000395715	ENST00000323037		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
5UTR-intron	ENST00000395715	ENST00000459998		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
5UTR-3CDS	ENST00000220888	ENST00000323037		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
5UTR-intron	ENST00000220888	ENST00000459998		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
intron-3CDS	ENST00000519076	ENST00000323037		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
intron-intron	ENST00000519076	ENST00000459998		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
intron-3CDS	ENST00000520276	ENST00000323037		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
intron-intron	ENST00000520276	ENST00000459998		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
5UTR-3CDS	ENST00000519674	ENST00000323037		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
5UTR-intron	ENST00000519674	ENST00000459998		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	TRPS1	chr8	116680772	-	ZNRF2	chr7	30395344	+
Frame-shit	ENST00000360605	ENST00000333625		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	URI1	chr19	30462134	+	IFNL1	chr19	39787445	+
Frame-shit	ENST00000542441	ENST00000333625		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	URI1	chr19	30462134	+	IFNL1	chr19	39787445	+
5UTR-3CDS	ENST00000392271	ENST00000333625		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	URI1	chr19	30462134	+	IFNL1	chr19	39787445	+
intron-3CDS	ENST00000312051	ENST00000333625		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	URI1	chr19	30462134	+	IFNL1	chr19	39787445	+
intron-3CDS	ENST00000574176	ENST00000333625		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	URI1	chr19	30462134	+	IFNL1	chr19	39787445	+
Frame-shit	ENST00000321287	ENST00000304863		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	ZNF610	chr19	52857632	+	UQCRFS1	chr19	29699065	-
Frame-shit	ENST00000403906	ENST00000304863		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	ZNF610	chr19	52857632	+	UQCRFS1	chr19	29699065	-
intron-3CDS	ENST00000601151	ENST00000304863		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	ZNF610	chr19	52857632	+	UQCRFS1	chr19	29699065	-
Frame-shit	ENST00000327920	ENST00000304863		TCGA	LD	BRCA	TCGA-A2-A3XX-01A	ZNF610	chr19	52857632	+	UQCRFS1	chr19	29699065	-
5UTR-5UTR	ENST00000264010	ENST00000219169		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	CTCF	chr16	67605167	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000264010	ENST00000569436		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	CTCF	chr16	67605167	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000264010	ENST00000568396		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	CTCF	chr16	67605167	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000401394	ENST00000219169		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	CTCF	chr16	67605167	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000401394	ENST00000569436		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	CTCF	chr16	67605167	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000401394	ENST00000568396		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	CTCF	chr16	67605167	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000296137	ENST00000413430		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	FYCO1	chr3	46037214	-	RBMS3-AS3	chr3	29306248	-
intron-5UTR	ENST00000535325	ENST00000413430		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	FYCO1	chr3	46037214	-	RBMS3-AS3	chr3	29306248	-
intron-5UTR	ENST00000438446	ENST00000413430		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	FYCO1	chr3	46037214	-	RBMS3-AS3	chr3	29306248	-
Frame-shit	ENST00000409792	ENST00000301831		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
5CDS-intron	ENST00000409792	ENST00000420927		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
5CDS-intron	ENST00000409792	ENST00000489118		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
5CDS-intron	ENST00000409792	ENST00000414606		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
intron-3CDS	ENST00000492397	ENST00000301831		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
intron-intron	ENST00000492397	ENST00000420927		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
intron-intron	ENST00000492397	ENST00000489118		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
intron-intron	ENST00000492397	ENST00000414606		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SETD2	chr3	47155366	-	ULK4	chr3	41504744	-
intron-3CDS	ENST00000454800	ENST00000359568		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SLC37A1	chr21	43987168	+	PCNT	chr21	47831103	+
intron-3UTR	ENST00000454800	ENST00000480896		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SLC37A1	chr21	43987168	+	PCNT	chr21	47831103	+
In-frame	ENST00000398341	ENST00000359568		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SLC37A1	chr21	43987168	+	PCNT	chr21	47831103	+
5CDS-3UTR	ENST00000398341	ENST00000480896		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SLC37A1	chr21	43987168	+	PCNT	chr21	47831103	+
In-frame	ENST00000352133	ENST00000359568		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SLC37A1	chr21	43987168	+	PCNT	chr21	47831103	+
5CDS-3UTR	ENST00000352133	ENST00000480896		TCGA	LD	BRCA	TCGA-A2-A3XY-01A	SLC37A1	chr21	43987168	+	PCNT	chr21	47831103	+
In-frame	ENST00000580974	ENST00000359299		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65374318	+	ANXA10	chr4	169083679	+
In-frame	ENST00000299954	ENST00000359299		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65374318	+	ANXA10	chr4	169083679	+
In-frame	ENST00000335257	ENST00000359299		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65374318	+	ANXA10	chr4	169083679	+
In-frame	ENST00000581322	ENST00000359299		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65374318	+	ANXA10	chr4	169083679	+
5CDS-5UTR	ENST00000580974	ENST00000504681		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000580974	ENST00000393354		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000580974	ENST00000300404		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000299954	ENST00000504681		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000299954	ENST00000393354		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000299954	ENST00000300404		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000335257	ENST00000504681		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000335257	ENST00000393354		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000335257	ENST00000300404		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000581322	ENST00000504681		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000581322	ENST00000393354		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000581322	ENST00000300404		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	PITPNC1	chr17	65671658	+	B4GALNT2	chr17	47218609	+
Frame-shit	ENST00000348513	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
Frame-shit	ENST00000348513	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
5CDS-intron	ENST00000348513	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000544009	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000544009	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-intron	ENST00000544009	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
Frame-shit	ENST00000431889	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
Frame-shit	ENST00000431889	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
5CDS-intron	ENST00000431889	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000580419	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000580419	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-intron	ENST00000580419	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000377808	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000377808	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-intron	ENST00000377808	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000400122	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000400122	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-intron	ENST00000400122	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000578044	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000578044	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-intron	ENST00000578044	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000474246	ENST00000358691		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-3CDS	ENST00000474246	ENST00000580168		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
intron-intron	ENST00000474246	ENST00000580662		TCGA	LD	BRCA	TCGA-A2-A3XZ-01A	SMARCE1	chr17	38798707	-	HELZ	chr17	65083197	-
Frame-shit	ENST00000438423	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000438423	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000267811	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000267811	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000452095	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000452095	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000333725	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000333725	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000557843	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000557843	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
intron-3CDS	ENST00000560764	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
intron-intron	ENST00000560764	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000543579	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000543579	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000537840	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000537840	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000343827	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000343827	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000559710	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000559710	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
Frame-shit	ENST00000559703	ENST00000375353		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000559703	ENST00000467169		TCGA	LD	BRCA	TCGA-A2-A3Y0-01A	TCF12	chr15	57555472	+	TMEM255B	chr13	114469088	+
5CDS-intron	ENST00000268070	ENST00000558879		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
5CDS-intron	ENST00000268070	ENST00000301981		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
5CDS-intron	ENST00000268070	ENST00000422500		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
5CDS-3UTR	ENST00000268070	ENST00000442993		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
5CDS-3UTR	ENST00000268070	ENST00000447360		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
5CDS-intron	ENST00000268070	ENST00000331450		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
5CDS-intron	ENST00000268070	ENST00000559399		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-intron	ENST00000559976	ENST00000558879		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-intron	ENST00000559976	ENST00000301981		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-intron	ENST00000559976	ENST00000422500		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-3UTR	ENST00000559976	ENST00000442993		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-3UTR	ENST00000559976	ENST00000447360		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-intron	ENST00000559976	ENST00000331450		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
intron-intron	ENST00000559976	ENST00000559399		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ADAMTS17	chr15	100589062	-	LRRC28	chr15	99901541	+
Frame-shit	ENST00000261769	ENST00000397338		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
Frame-shit	ENST00000261769	ENST00000282512		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
Frame-shit	ENST00000261769	ENST00000381937		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
5CDS-5UTR	ENST00000261769	ENST00000511613		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
5CDS-5UTR	ENST00000261769	ENST00000506945		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
5CDS-5UTR	ENST00000261769	ENST00000514504		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
Frame-shit	ENST00000422392	ENST00000397338		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
Frame-shit	ENST00000422392	ENST00000282512		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
Frame-shit	ENST00000422392	ENST00000381937		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
5CDS-5UTR	ENST00000422392	ENST00000511613		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
5CDS-5UTR	ENST00000422392	ENST00000506945		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
5CDS-5UTR	ENST00000422392	ENST00000514504		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
intron-3CDS	ENST00000562836	ENST00000397338		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
intron-3CDS	ENST00000562836	ENST00000282512		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
intron-3CDS	ENST00000562836	ENST00000381937		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
intron-5UTR	ENST00000562836	ENST00000511613		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
intron-5UTR	ENST00000562836	ENST00000506945		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
intron-5UTR	ENST00000562836	ENST00000514504		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	CDH1	chr16	68772314	+	NADK2	chr5	36201263	-
In-frame	ENST00000388948	ENST00000268070		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
5CDS-intron	ENST00000388948	ENST00000559976		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
In-frame	ENST00000284395	ENST00000268070		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
5CDS-intron	ENST00000284395	ENST00000559976		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
Frame-shit	ENST00000532029	ENST00000268070		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
5CDS-intron	ENST00000532029	ENST00000559976		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
intron-3CDS	ENST00000532145	ENST00000268070		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
intron-intron	ENST00000532145	ENST00000559976		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	LRRK1	chr15	101529603	+	ADAMTS17	chr15	100591936	-
Frame-shit	ENST00000372009	ENST00000460742		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
Frame-shit	ENST00000372009	ENST00000259983		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
Frame-shit	ENST00000372009	ENST00000426700		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
5CDS-5UTR	ENST00000372009	ENST00000467832		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
5CDS-5UTR	ENST00000372009	ENST00000379586		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
5CDS-5UTR	ENST00000372009	ENST00000503680		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
Frame-shit	ENST00000361297	ENST00000460742		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
Frame-shit	ENST00000361297	ENST00000259983		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
Frame-shit	ENST00000361297	ENST00000426700		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
5CDS-5UTR	ENST00000361297	ENST00000467832		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
5CDS-5UTR	ENST00000361297	ENST00000379586		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
5CDS-5UTR	ENST00000361297	ENST00000503680		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
intron-3CDS	ENST00000477968	ENST00000460742		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
intron-3CDS	ENST00000477968	ENST00000259983		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
intron-3CDS	ENST00000477968	ENST00000426700		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
intron-5UTR	ENST00000477968	ENST00000467832		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
intron-5UTR	ENST00000477968	ENST00000379586		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
intron-5UTR	ENST00000477968	ENST00000503680		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	MAST2	chr1	46348067	+	C6orf52	chr6	10683465	-
Frame-shit	ENST00000397338	ENST00000261769		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
Frame-shit	ENST00000397338	ENST00000422392		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5CDS-3UTR	ENST00000397338	ENST00000562836		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
In-frame	ENST00000282512	ENST00000261769		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
In-frame	ENST00000282512	ENST00000422392		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5CDS-3UTR	ENST00000282512	ENST00000562836		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
Frame-shit	ENST00000381937	ENST00000261769		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
Frame-shit	ENST00000381937	ENST00000422392		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5CDS-3UTR	ENST00000381937	ENST00000562836		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5UTR-3CDS	ENST00000511613	ENST00000261769		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5UTR-3CDS	ENST00000511613	ENST00000422392		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5UTR-3UTR	ENST00000511613	ENST00000562836		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
In-frame	ENST00000506945	ENST00000261769		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
In-frame	ENST00000506945	ENST00000422392		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5CDS-3UTR	ENST00000506945	ENST00000562836		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
intron-3CDS	ENST00000514504	ENST00000261769		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
intron-3CDS	ENST00000514504	ENST00000422392		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
intron-3UTR	ENST00000514504	ENST00000562836		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NADK2	chr5	36207272	-	CDH1	chr16	68835573	+
5CDS-intron	ENST00000369301	ENST00000331161		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NHLRC2	chr10	115618439	+	ENKUR	chr10	25350298	-
5CDS-intron	ENST00000369301	ENST00000376363		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	NHLRC2	chr10	115618439	+	ENKUR	chr10	25350298	-
Frame-shit	ENST00000372759	ENST00000542507		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000372759	ENST00000373812		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000372759	ENST00000541996		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000372759	ENST00000478283		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000479131	ENST00000542507		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000479131	ENST00000373812		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000479131	ENST00000541996		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
intron-3UTR	ENST00000479131	ENST00000478283		TCGA	LD	BRCA	TCGA-A2-A4RW-01A	ZMPSTE24	chr1	40737707	+	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000256343	ENST00000389722		TCGA	LD	BRCA	TCGA-A2-A4RY-01A	CATSPERB	chr14	92105440	-	SPTB	chr14	65241245	-
Frame-shit	ENST00000256343	ENST00000556626		TCGA	LD	BRCA	TCGA-A2-A4RY-01A	CATSPERB	chr14	92105440	-	SPTB	chr14	65241245	-
Frame-shit	ENST00000256343	ENST00000389721		TCGA	LD	BRCA	TCGA-A2-A4RY-01A	CATSPERB	chr14	92105440	-	SPTB	chr14	65241245	-
Frame-shit	ENST00000256343	ENST00000542895		TCGA	LD	BRCA	TCGA-A2-A4RY-01A	CATSPERB	chr14	92105440	-	SPTB	chr14	65241245	-
Frame-shit	ENST00000256343	ENST00000389720		TCGA	LD	BRCA	TCGA-A2-A4RY-01A	CATSPERB	chr14	92105440	-	SPTB	chr14	65241245	-
5CDS-intron	ENST00000256343	ENST00000342835		TCGA	LD	BRCA	TCGA-A2-A4RY-01A	CATSPERB	chr14	92105440	-	SPTB	chr14	65241245	-
In-frame	ENST00000332509	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000332509	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
In-frame	ENST00000335539	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000335539	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
In-frame	ENST00000402064	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
5CDS-intron	ENST00000402064	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-3CDS	ENST00000490473	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000490473	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-3CDS	ENST00000436218	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000436218	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-3CDS	ENST00000447598	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000447598	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-3CDS	ENST00000435484	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000435484	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-3CDS	ENST00000417303	ENST00000419152		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000532400		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000532741		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000317198		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000526838		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000442189		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000528610		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000423316		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000395119		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000529272		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000531621		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000524624		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
intron-intron	ENST00000417303	ENST00000531770		TCGA	LD	BRCA	TCGA-A2-A4S1-01A	PLA2G6	chr22	38539112	-	EEF1D	chr8	144662376	-
Frame-shit	ENST00000361756	ENST00000282018		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	RNF121	chr11	71671937	+	CYSLTR2	chr13	49280953	+
Frame-shit	ENST00000533380	ENST00000282018		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	RNF121	chr11	71671937	+	CYSLTR2	chr13	49280953	+
Frame-shit	ENST00000393713	ENST00000282018		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	RNF121	chr11	71671937	+	CYSLTR2	chr13	49280953	+
3UTR-3CDS	ENST00000490867	ENST00000282018		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	RNF121	chr11	71671937	+	CYSLTR2	chr13	49280953	+
5UTR-3CDS	ENST00000545854	ENST00000282018		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	RNF121	chr11	71671937	+	CYSLTR2	chr13	49280953	+
Frame-shit	ENST00000530137	ENST00000282018		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	RNF121	chr11	71671937	+	CYSLTR2	chr13	49280953	+
5CDS-5UTR	ENST00000380680	ENST00000405591		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	UBL3	chr13	30423649	-	MTIF3	chr13	28019293	-
5CDS-5UTR	ENST00000380680	ENST00000431572		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	UBL3	chr13	30423649	-	MTIF3	chr13	28019293	-
5CDS-intron	ENST00000380680	ENST00000381116		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	UBL3	chr13	30423649	-	MTIF3	chr13	28019293	-
5CDS-5UTR	ENST00000380680	ENST00000381120		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	UBL3	chr13	30423649	-	MTIF3	chr13	28019293	-
5CDS-intron	ENST00000380680	ENST00000461838		TCGA	LD	BRCA	TCGA-A7-A0CE-01A	UBL3	chr13	30423649	-	MTIF3	chr13	28019293	-
In-frame	ENST00000379540	ENST00000330899		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
Frame-shit	ENST00000379540	ENST00000544625		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
5CDS-3UTR	ENST00000379540	ENST00000495015		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
In-frame	ENST00000379521	ENST00000330899		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
Frame-shit	ENST00000379521	ENST00000544625		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
5CDS-3UTR	ENST00000379521	ENST00000495015		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
In-frame	ENST00000318524	ENST00000330899		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
Frame-shit	ENST00000318524	ENST00000544625		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
5CDS-3UTR	ENST00000318524	ENST00000495015		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
intron-3CDS	ENST00000463421	ENST00000330899		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
intron-3CDS	ENST00000463421	ENST00000544625		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
intron-3UTR	ENST00000463421	ENST00000495015		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	NFX1	chr9	33319125	+	DNAJA1	chr9	33038683	+
5UTR-3UTR	ENST00000426496	ENST00000340030		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000426496	ENST00000367721		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000392078	ENST00000340030		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000392078	ENST00000367721		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
3UTR-3UTR	ENST00000476522	ENST00000340030		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
3UTR-3UTR	ENST00000476522	ENST00000367721		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000367742	ENST00000340030		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000367742	ENST00000367721		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000338920	ENST00000340030		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
5UTR-3UTR	ENST00000338920	ENST00000367721		TCGA	LD	BRCA	TCGA-A7-A0CG-01A	PRRC2C	chr1	171454874	+	FASLG	chr1	172634762	+
Frame-shit	ENST00000380637	ENST00000380588		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
5CDS-intron	ENST00000380637	ENST00000479378		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
Frame-shit	ENST00000380634	ENST00000380588		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
5CDS-intron	ENST00000380634	ENST00000479378		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
intron-3CDS	ENST00000458295	ENST00000380588		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
intron-intron	ENST00000458295	ENST00000479378		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
Frame-shit	ENST00000380631	ENST00000380588		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
5CDS-intron	ENST00000380631	ENST00000479378		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
Frame-shit	ENST00000333634	ENST00000380588		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
5CDS-intron	ENST00000333634	ENST00000479378		TCGA	LD	BRCA	TCGA-A7-A0CH-01A	SH3BGR	chr21	40871841	+	IGSF5	chr21	41163935	+
5CDS-intron	ENST00000298892	ENST00000396037		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000298892	ENST00000539510		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000298892	ENST00000536558		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000298892	ENST00000404299		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000298892	ENST00000381424		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000395805	ENST00000396037		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000395805	ENST00000539510		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000395805	ENST00000536558		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000395805	ENST00000404299		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000395805	ENST00000381424		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000251071	ENST00000396037		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000251071	ENST00000539510		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000251071	ENST00000536558		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000251071	ENST00000404299		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000251071	ENST00000381424		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5UTR-intron	ENST00000308433	ENST00000396037		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5UTR-intron	ENST00000308433	ENST00000539510		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5UTR-intron	ENST00000308433	ENST00000536558		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5UTR-intron	ENST00000308433	ENST00000404299		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5UTR-intron	ENST00000308433	ENST00000381424		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000417045	ENST00000396037		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000417045	ENST00000539510		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000417045	ENST00000536558		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000417045	ENST00000404299		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
5CDS-intron	ENST00000417045	ENST00000381424		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000538387	ENST00000396037		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000538387	ENST00000539510		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000538387	ENST00000536558		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000538387	ENST00000404299		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000538387	ENST00000381424		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CAPRIN2	chr12	30904005	-	ST8SIA1	chr12	22223559	-
intron-3UTR	ENST00000487137	ENST00000357460		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000487137	ENST00000561013		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000487137	ENST00000431326		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000487137	ENST00000558278		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-3UTR	ENST00000397359	ENST00000357460		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000397359	ENST00000561013		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000397359	ENST00000431326		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000397359	ENST00000558278		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-3UTR	ENST00000485922	ENST00000357460		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000485922	ENST00000561013		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000485922	ENST00000431326		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000485922	ENST00000558278		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-3UTR	ENST00000554034	ENST00000357460		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000554034	ENST00000561013		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000554034	ENST00000431326		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000554034	ENST00000558278		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-3UTR	ENST00000267383	ENST00000357460		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000267383	ENST00000561013		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000267383	ENST00000431326		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
intron-intron	ENST00000267383	ENST00000558278		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	CDH24	chr14	23523470	-	HOMEZ	chr14	23742037	-
Frame-shit	ENST00000278886	ENST00000361475		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
Frame-shit	ENST00000278886	ENST00000536701		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
Frame-shit	ENST00000278886	ENST00000536724		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
Frame-shit	ENST00000422516	ENST00000361475		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
Frame-shit	ENST00000422516	ENST00000536701		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
Frame-shit	ENST00000422516	ENST00000536724		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
intron-3CDS	ENST00000464285	ENST00000361475		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
intron-3CDS	ENST00000464285	ENST00000536701		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
intron-3CDS	ENST00000464285	ENST00000536724		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	NINL	chr20	25491310	-	TGM2	chr20	36758771	-
Frame-shit	ENST00000536255	ENST00000476844		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000536255	ENST00000492590		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000536255	ENST00000466788		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000536255	ENST00000468189		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000536255	ENST00000341848		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000381208	ENST00000476844		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000381208	ENST00000492590		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000381208	ENST00000466788		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000381208	ENST00000468189		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000381208	ENST00000341848		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000381209	ENST00000476844		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000381209	ENST00000492590		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000381209	ENST00000466788		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000381209	ENST00000468189		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000381209	ENST00000341848		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000327154	ENST00000476844		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000327154	ENST00000492590		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000327154	ENST00000466788		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000327154	ENST00000468189		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000327154	ENST00000341848		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000405578	ENST00000476844		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000405578	ENST00000492590		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000405578	ENST00000466788		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000405578	ENST00000468189		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000405578	ENST00000341848		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000574003	ENST00000476844		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
Frame-shit	ENST00000574003	ENST00000492590		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000574003	ENST00000466788		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000574003	ENST00000468189		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000574003	ENST00000341848		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	RPAIN	chr17	5326149	+	FHIT	chr3	59908140	-
In-frame	ENST00000373644	ENST00000394919		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
In-frame	ENST00000373644	ENST00000342444		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
In-frame	ENST00000373644	ENST00000317168		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
In-frame	ENST00000373644	ENST00000545550		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
In-frame	ENST00000373644	ENST00000317126		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
In-frame	ENST00000373644	ENST00000394915		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
5CDS-intron	ENST00000373644	ENST00000492502		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	TET1	chr10	70360791	+	ASCC1	chr10	73921432	-
5UTR-3CDS	ENST00000493485	ENST00000421837		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000493485	ENST00000354829		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000342499		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000417625		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000415413		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000477658		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000444905		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000312017		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000493485	ENST00000222382		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-3CDS	ENST00000494186	ENST00000421837		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-3CDS	ENST00000494186	ENST00000354829		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000342499		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000417625		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000415413		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000477658		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000444905		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000312017		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
intron-intron	ENST00000494186	ENST00000222382		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000331410	ENST00000421837		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000331410	ENST00000354829		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000342499		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000417625		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000415413		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000477658		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000444905		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000312017		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000331410	ENST00000222382		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000483089	ENST00000421837		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000483089	ENST00000354829		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000342499		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000417625		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000415413		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000477658		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000444905		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000312017		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000483089	ENST00000222382		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000448667	ENST00000421837		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000448667	ENST00000354829		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000342499		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000417625		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000415413		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000477658		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000444905		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000312017		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000448667	ENST00000222382		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000379724	ENST00000421837		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-3CDS	ENST00000379724	ENST00000354829		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000342499		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000417625		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000415413		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000477658		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000444905		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000312017		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5UTR-intron	ENST00000379724	ENST00000222382		TCGA	LD	BRCA	TCGA-A7-A0CJ-01A	ZNF789	chr7	99070679	+	CYP3A43	chr7	99434076	+
5CDS-3UTR	ENST00000440973	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000440973	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000440973	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000440973	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000440973	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000440973	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000338799	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000338799	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000338799	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000338799	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000338799	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000338799	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000456483	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000456483	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000456483	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000456483	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000456483	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000456483	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000443427	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000443427	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000443427	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000443427	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000443427	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000443427	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000206249	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000206249	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000206249	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000206249	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000206249	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000206249	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000406599	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000406599	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000406599	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000406599	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000406599	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000406599	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000427531	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000427531	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000427531	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000427531	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000427531	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000427531	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000482101	ENST00000313949		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000482101	ENST00000371098		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000482101	ENST00000371075		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000482101	ENST00000371100		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000371099		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000371102		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000482101	ENST00000464624		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000306120		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000371095		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000371085		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000354359		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000265620		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000306090		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
intron-intron	ENST00000482101	ENST00000371081		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	ESR1	chr6	152163922	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000406337	ENST00000505455		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	KAT6A	chr8	41905896	-	ADAM5	chr8	39258852	+
5CDS-3UTR	ENST00000265713	ENST00000505455		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	KAT6A	chr8	41905896	-	ADAM5	chr8	39258852	+
5CDS-3UTR	ENST00000396930	ENST00000505455		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	KAT6A	chr8	41905896	-	ADAM5	chr8	39258852	+
5CDS-3UTR	ENST00000485568	ENST00000505455		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	KAT6A	chr8	41905896	-	ADAM5	chr8	39258852	+
intron-3CDS	ENST00000558879	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000558879	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000301981	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000301981	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000422500	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000422500	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
3UTR-3CDS	ENST00000442993	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
3UTR-3UTR	ENST00000442993	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000447360	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000447360	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000331450	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000331450	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000559399	ENST00000338825		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000559399	ENST00000520657		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	LRRC28	chr15	99901716	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000328195	ENST00000397166		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	PROSC	chr8	37623873	+	DDHD2	chr8	38103751	+
In-frame	ENST00000328195	ENST00000520272		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	PROSC	chr8	37623873	+	DDHD2	chr8	38103751	+
5CDS-3UTR	ENST00000328195	ENST00000528888		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	PROSC	chr8	37623873	+	DDHD2	chr8	38103751	+
5CDS-intron	ENST00000328195	ENST00000517385		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	PROSC	chr8	37623873	+	DDHD2	chr8	38103751	+
5CDS-intron	ENST00000328195	ENST00000529845		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	PROSC	chr8	37623873	+	DDHD2	chr8	38103751	+
intron-intron	ENST00000287263	ENST00000372124		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000287263	ENST00000339463		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000287263	ENST00000450530		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000287263	ENST00000534944		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000287263	ENST00000372122		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000287263	ENST00000372123		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000330843	ENST00000372124		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000330843	ENST00000339463		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000330843	ENST00000450530		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000330843	ENST00000534944		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000330843	ENST00000372122		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000330843	ENST00000372123		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000522727	ENST00000372124		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000522727	ENST00000339463		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000522727	ENST00000450530		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000522727	ENST00000534944		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000522727	ENST00000372122		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000522727	ENST00000372123		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000523182	ENST00000372124		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000523182	ENST00000339463		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000523182	ENST00000450530		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000523182	ENST00000534944		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000523182	ENST00000372122		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000523182	ENST00000372123		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000524118	ENST00000372124		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000524118	ENST00000339463		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000524118	ENST00000450530		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000524118	ENST00000534944		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000524118	ENST00000372122		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
intron-intron	ENST00000524118	ENST00000372123		TCGA	LD	BRCA	TCGA-A7-A0D9-01A	RAB11FIP1	chr8	37719400	-	GFI1B	chr9	135828765	+
5CDS-5UTR	ENST00000260408	ENST00000221665		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
5CDS-5UTR	ENST00000260408	ENST00000592585		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
intron-5UTR	ENST00000402627	ENST00000221665		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
intron-5UTR	ENST00000402627	ENST00000592585		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
intron-5UTR	ENST00000561288	ENST00000221665		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
intron-5UTR	ENST00000561288	ENST00000592585		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
intron-5UTR	ENST00000396140	ENST00000221665		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
intron-5UTR	ENST00000396140	ENST00000592585		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
5UTR-5UTR	ENST00000558733	ENST00000221665		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
5UTR-5UTR	ENST00000558733	ENST00000592585		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	ADAM10	chr15	58957296	-	FIZ1	chr19	56109267	-
In-frame	ENST00000336665	ENST00000257700		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
5CDS-intron	ENST00000336665	ENST00000477285		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
In-frame	ENST00000304032	ENST00000257700		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
5CDS-intron	ENST00000304032	ENST00000477285		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
In-frame	ENST00000409538	ENST00000257700		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
5CDS-intron	ENST00000409538	ENST00000477285		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
In-frame	ENST00000428334	ENST00000257700		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
5CDS-intron	ENST00000428334	ENST00000477285		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
intron-3CDS	ENST00000409457	ENST00000257700		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
intron-intron	ENST00000409457	ENST00000477285		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	AGAP1	chr2	236792093	+	RINT1	chr7	105204180	+
intron-intron	ENST00000377791	ENST00000360441		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	HIST1H2AC	chr6	26124977	+	HIST1H4E	chr6	26204840	+
intron-intron	ENST00000602637	ENST00000360441		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	HIST1H2AC	chr6	26124977	+	HIST1H4E	chr6	26204840	+
Frame-shit	ENST00000433360	ENST00000367723		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433360	ENST00000608151		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433360	ENST00000610051		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433360	ENST00000263688		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000340694	ENST00000367723		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000340694	ENST00000608151		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000340694	ENST00000610051		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000340694	ENST00000263688		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000424654	ENST00000367723		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000424654	ENST00000608151		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000424654	ENST00000610051		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000424654	ENST00000263688		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433881	ENST00000367723		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433881	ENST00000608151		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433881	ENST00000610051		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000433881	ENST00000263688		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000289495	ENST00000367723		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000289495	ENST00000608151		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000289495	ENST00000610051		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000289495	ENST00000263688		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000456331	ENST00000367723		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000456331	ENST00000608151		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000456331	ENST00000610051		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
Frame-shit	ENST00000456331	ENST00000263688		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	PPP1R9A	chr7	94898019	+	SUCO	chr1	172577887	+
intron-3CDS	ENST00000366760	ENST00000366757		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	SNAP47	chr1	227923200	+	PRSS38	chr1	228033171	+
Frame-shit	ENST00000315781	ENST00000366757		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	SNAP47	chr1	227923200	+	PRSS38	chr1	228033171	+
Frame-shit	ENST00000366759	ENST00000366757		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	SNAP47	chr1	227923200	+	PRSS38	chr1	228033171	+
intron-3CDS	ENST00000480897	ENST00000366757		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	SNAP47	chr1	227923200	+	PRSS38	chr1	228033171	+
5CDS-5UTR	ENST00000379542	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379542	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379542	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379542	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379542	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379542	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379542	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-5UTR	ENST00000491103	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-5UTR	ENST00000491103	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-5UTR	ENST00000491103	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-5UTR	ENST00000491103	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-5UTR	ENST00000491103	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-5UTR	ENST00000491103	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
3UTR-intron	ENST00000491103	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000461342	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000461342	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000461342	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000461342	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000461342	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000461342	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000461342	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000475942	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000475942	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000475942	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000475942	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000475942	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000475942	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000475942	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379530	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379530	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379530	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379530	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379530	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000379530	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000379530	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000473276	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000473276	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000473276	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000473276	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000473276	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000473276	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000473276	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000481240	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000481240	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000481240	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000481240	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000481240	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000481240	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000481240	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000467317	ENST00000375976		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000467317	ENST00000211379		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000467317	ENST00000439687		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000467317	ENST00000404765		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000467317	ENST00000375964		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000467317	ENST00000362049		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000470875		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000442479		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000449450		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000417144		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000551350		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000497694		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000422756		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000425649		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000434446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000552467		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000463220		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000413922		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000454478		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000412012		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000546462		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000460147		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000383446		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000361076		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000383448		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000552605		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000471376		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000415373		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000444402		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000415345		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000550393		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000461852		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000443182		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000451932		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000419847		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000552116		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-intron	ENST00000467317	ENST00000460429		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	TMEM14B	chr6	10755465	+	BAG6	chr6	31619553	-
5CDS-5UTR	ENST00000348165	ENST00000429029		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000348165	ENST00000262177		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000348165	ENST00000452797		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000348165	ENST00000443280		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
5CDS-intron	ENST00000348165	ENST00000494267		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
intron-5UTR	ENST00000389103	ENST00000429029		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
intron-5UTR	ENST00000389103	ENST00000262177		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
intron-5UTR	ENST00000389103	ENST00000452797		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
intron-5UTR	ENST00000389103	ENST00000443280		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
intron-intron	ENST00000389103	ENST00000494267		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UBE3C	chr7	157024021	+	DNAJB6	chr7	157151241	+
5UTR-3CDS	ENST00000370794	ENST00000502553		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000370794	ENST00000265112		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370794	ENST00000541634		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370794	ENST00000455217		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370794	ENST00000414361		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-intron	ENST00000370794	ENST00000509410		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
intron-3CDS	ENST00000357428	ENST00000502553		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
intron-3CDS	ENST00000357428	ENST00000265112		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
intron-5UTR	ENST00000357428	ENST00000541634		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
intron-5UTR	ENST00000357428	ENST00000455217		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
intron-5UTR	ENST00000357428	ENST00000414361		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
intron-intron	ENST00000357428	ENST00000509410		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000370793	ENST00000502553		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000370793	ENST00000265112		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370793	ENST00000541634		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370793	ENST00000455217		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370793	ENST00000414361		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-intron	ENST00000370793	ENST00000509410		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000370792	ENST00000502553		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000370792	ENST00000265112		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370792	ENST00000541634		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370792	ENST00000455217		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000370792	ENST00000414361		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-intron	ENST00000370792	ENST00000509410		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000528150	ENST00000502553		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-3CDS	ENST00000528150	ENST00000265112		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000528150	ENST00000541634		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000528150	ENST00000455217		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-5UTR	ENST00000528150	ENST00000414361		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
5UTR-intron	ENST00000528150	ENST00000509410		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	USP33	chr1	78225328	-	TARS	chr5	33445430	+
Frame-shit	ENST00000367545	ENST00000262320		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
Frame-shit	ENST00000367545	ENST00000354866		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000367545	ENST00000481769		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
Frame-shit	ENST00000367526	ENST00000262320		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
Frame-shit	ENST00000367526	ENST00000354866		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000367526	ENST00000481769		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
intron-3CDS	ENST00000480333	ENST00000262320		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
intron-3CDS	ENST00000480333	ENST00000354866		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
intron-5UTR	ENST00000480333	ENST00000481769		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	UTRN	chr6	145021379	+	AXIN1	chr16	364683	-
Frame-shit	ENST00000360079	ENST00000412168		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000360079	ENST00000469384		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-3UTR	ENST00000360079	ENST00000442674		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000360079	ENST00000551639		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000360079	ENST00000550775		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000402580	ENST00000412168		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000402580	ENST00000469384		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-3UTR	ENST00000402580	ENST00000442674		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000402580	ENST00000551639		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000402580	ENST00000550775		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5UTR-3CDS	ENST00000428575	ENST00000412168		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5UTR-3CDS	ENST00000428575	ENST00000469384		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5UTR-3UTR	ENST00000428575	ENST00000442674		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5UTR-intron	ENST00000428575	ENST00000551639		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5UTR-intron	ENST00000428575	ENST00000550775		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000359308	ENST00000412168		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000359308	ENST00000469384		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-3UTR	ENST00000359308	ENST00000442674		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000359308	ENST00000551639		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000359308	ENST00000550775		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000405878	ENST00000412168		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
Frame-shit	ENST00000405878	ENST00000469384		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-3UTR	ENST00000405878	ENST00000442674		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000405878	ENST00000551639		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000405878	ENST00000550775		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
In-frame	ENST00000405506	ENST00000412168		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
In-frame	ENST00000405506	ENST00000469384		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-3UTR	ENST00000405506	ENST00000442674		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000405506	ENST00000551639		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-intron	ENST00000405506	ENST00000550775		TCGA	LD	BRCA	TCGA-A7-A0DA-01A	XRCC6	chr22	42018090	+	GPX5	chr6	28497228	+
5CDS-5UTR	ENST00000383898	ENST00000391250		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	RNU6-1	chr15	68132277	-	SNORD91B	chr17	2232459	-
intron-3UTR	ENST00000516290	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000362684	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000606575	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000606574	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000580281	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000577618	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000584018	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000579513	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000580213	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000582426	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000581688	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000582199	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000584937	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000577825	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000580475	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000579987	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000578102	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000581325	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000578508	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000583575	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000578081	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-3UTR	ENST00000459549	ENST00000383869		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-27P	chr14	35015968	+
intron-5UTR	ENST00000516290	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000362684	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000606575	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000606574	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000580281	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000577618	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000584018	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000579513	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000580213	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000582426	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000581688	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000582199	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000584937	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000577825	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000580475	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000579987	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000578102	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000581325	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000578508	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000583575	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000578081	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
intron-5UTR	ENST00000459549	ENST00000383861		TCGA	LD	BRCA	TCGA-A7-A0DC-01A	U1	chr1	145969385	-	RNU1-28P	chr14	35025547	-
In-frame	ENST00000324856	ENST00000427245		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000525682		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000236342		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000526219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000374185		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000324856	ENST00000360009		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
5CDS-3UTR	ENST00000324856	ENST00000531955		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000427245		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000525682		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000236342		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000526219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000374185		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000457599	ENST00000360009		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
5CDS-3UTR	ENST00000457599	ENST00000531955		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000427245		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000525682		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000236342		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000526219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000374185		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000374152	ENST00000360009		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
5CDS-3UTR	ENST00000374152	ENST00000531955		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000427245		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000525682		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000236342		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000526219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000374185		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3CDS	ENST00000540690	ENST00000360009		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
intron-3UTR	ENST00000540690	ENST00000531955		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARID1A	chr1	27059283	+	DHDDS	chr1	26764659	+
In-frame	ENST00000356401	ENST00000446256		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000356401	ENST00000445061		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000356401	ENST00000476446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000356401	ENST00000348968		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000356401	ENST00000457607		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000449376	ENST00000446256		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000449376	ENST00000445061		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000449376	ENST00000476446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000449376	ENST00000348968		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
5CDS-intron	ENST00000449376	ENST00000457607		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-3CDS	ENST00000490095	ENST00000446256		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-3CDS	ENST00000490095	ENST00000445061		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-intron	ENST00000490095	ENST00000476446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-intron	ENST00000490095	ENST00000348968		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
3UTR-intron	ENST00000490095	ENST00000457607		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ARIH2	chr3	49011249	+	DHX30	chr3	47887190	+
In-frame	ENST00000394919	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
In-frame	ENST00000394919	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
In-frame	ENST00000394919	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
In-frame	ENST00000394919	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
In-frame	ENST00000394919	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000342444	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000342444	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000342444	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000342444	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000342444	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000545550	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000545550	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000545550	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000545550	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000545550	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317126	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317126	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317126	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317126	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317126	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000401998		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000361114		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000398761		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000418483		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000398763		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
intron-intron	ENST00000492502	ENST00000604025		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000278980	ENST00000375523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	COMMD7	chr20	31291825	-	SUN5	chr20	31583533	-
Frame-shit	ENST00000278980	ENST00000356173		TCGA	LD	BRCA	TCGA-A7-A13D-01A	COMMD7	chr20	31291825	-	SUN5	chr20	31583533	-
5CDS-intron	ENST00000278980	ENST00000375519		TCGA	LD	BRCA	TCGA-A7-A13D-01A	COMMD7	chr20	31291825	-	SUN5	chr20	31583533	-
Frame-shit	ENST00000446419	ENST00000375523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	COMMD7	chr20	31291825	-	SUN5	chr20	31583533	-
Frame-shit	ENST00000446419	ENST00000356173		TCGA	LD	BRCA	TCGA-A7-A13D-01A	COMMD7	chr20	31291825	-	SUN5	chr20	31583533	-
5CDS-intron	ENST00000446419	ENST00000375519		TCGA	LD	BRCA	TCGA-A7-A13D-01A	COMMD7	chr20	31291825	-	SUN5	chr20	31583533	-
5UTR-3CDS	ENST00000492551	ENST00000337132		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ESPNP	chr1	17023274	-	NECAP2	chr1	16782313	+
5UTR-3CDS	ENST00000492551	ENST00000504551		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ESPNP	chr1	17023274	-	NECAP2	chr1	16782313	+
5UTR-3CDS	ENST00000492551	ENST00000457722		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ESPNP	chr1	17023274	-	NECAP2	chr1	16782313	+
5UTR-3CDS	ENST00000492551	ENST00000406746		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ESPNP	chr1	17023274	-	NECAP2	chr1	16782313	+
5UTR-intron	ENST00000492551	ENST00000443980		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ESPNP	chr1	17023274	-	NECAP2	chr1	16782313	+
5UTR-intron	ENST00000492551	ENST00000486390		TCGA	LD	BRCA	TCGA-A7-A13D-01A	ESPNP	chr1	17023274	-	NECAP2	chr1	16782313	+
intron-3CDS	ENST00000379081	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379081	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
In-frame	ENST00000379087	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379087	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-3CDS	ENST00000379080	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
intron-intron	ENST00000379080	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
In-frame	ENST00000379084	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379084	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
In-frame	ENST00000379089	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379089	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
In-frame	ENST00000445726	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000445726	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
In-frame	ENST00000297620	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000297620	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
In-frame	ENST00000379078	ENST00000358127		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000523241		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000520154		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000377852		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000377853		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000522003		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000520281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000414447		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000523145		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000446742		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-intron	ENST00000379078	ENST00000377847		TCGA	LD	BRCA	TCGA-A7-A13D-01A	FAM219A	chr9	34458202	-	PAX5	chr9	36923481	-
5CDS-5UTR	ENST00000346178	ENST00000373953		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000346178	ENST00000440666		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000346178	ENST00000339411		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000346178	ENST00000482946		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000356638	ENST00000373953		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000356638	ENST00000440666		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000356638	ENST00000339411		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000356638	ENST00000482946		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000534779	ENST00000373953		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000534779	ENST00000440666		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000534779	ENST00000339411		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000534779	ENST00000482946		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000540933	ENST00000373953		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000540933	ENST00000440666		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-5UTR	ENST00000540933	ENST00000339411		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
5CDS-3UTR	ENST00000540933	ENST00000482946		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-5UTR	ENST00000534422	ENST00000373953		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-5UTR	ENST00000534422	ENST00000440666		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-5UTR	ENST00000534422	ENST00000339411		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-3UTR	ENST00000534422	ENST00000482946		TCGA	LD	BRCA	TCGA-A7-A13D-01A	GANAB	chr11	62400037	-	ZNF76	chr6	35248833	+
intron-intron	ENST00000254846	ENST00000389982		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000254846	ENST00000576060		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000254846	ENST00000330767		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000448097	ENST00000389982		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000448097	ENST00000576060		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000448097	ENST00000330767		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000572030	ENST00000389982		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000572030	ENST00000576060		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
intron-intron	ENST00000572030	ENST00000330767		TCGA	LD	BRCA	TCGA-A7-A13D-01A	KDM6B	chr17	7755426	+	TMEM95	chr17	7259504	+
Frame-shit	ENST00000298048	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5CDS-5UTR	ENST00000298048	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5UTR-3CDS	ENST00000538311	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5UTR-5UTR	ENST00000538311	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
Frame-shit	ENST00000536987	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5CDS-5UTR	ENST00000536987	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
Frame-shit	ENST00000536860	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5CDS-5UTR	ENST00000536860	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
intron-3CDS	ENST00000545008	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
intron-5UTR	ENST00000545008	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
Frame-shit	ENST00000536329	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5CDS-5UTR	ENST00000536329	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
Frame-shit	ENST00000541717	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5CDS-5UTR	ENST00000541717	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
Frame-shit	ENST00000543751	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
5CDS-5UTR	ENST00000543751	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
3UTR-3CDS	ENST00000487398	ENST00000456972		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
3UTR-5UTR	ENST00000487398	ENST00000378078		TCGA	LD	BRCA	TCGA-A7-A13D-01A	MELK	chr9	36597287	+	RGP1	chr9	35749734	+
Frame-shit	ENST00000323666	ENST00000436874		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000323666	ENST00000261219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000323666	ENST00000356859		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000546753	ENST00000436874		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000546753	ENST00000261219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000546753	ENST00000356859		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000261220	ENST00000436874		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000261220	ENST00000261219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000261220	ENST00000356859		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000550777	ENST00000436874		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000550777	ENST00000261219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000550777	ENST00000356859		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000551840	ENST00000436874		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
Frame-shit	ENST00000551840	ENST00000261219		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-3UTR	ENST00000551840	ENST00000356859		TCGA	LD	BRCA	TCGA-A7-A13D-01A	METAP2	chr12	95868106	+	VEZT	chr12	95663827	+
5CDS-5UTR	ENST00000377122	ENST00000402508		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000403359		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000316377		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000480038		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377122	ENST00000378314		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377122	ENST00000405808		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377122	ENST00000434523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000402508		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000403359		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000316377		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000480038		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000417816	ENST00000378314		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000417816	ENST00000405808		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000417816	ENST00000434523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000402508		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000403359		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000316377		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000480038		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377159	ENST00000378314		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000377159	ENST00000405808		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000377159	ENST00000434523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000402508		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000403359		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000316377		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000480038		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-5UTR	ENST00000377119	ENST00000378314		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377119	ENST00000405808		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
5CDS-intron	ENST00000377119	ENST00000434523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000402508		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000403359		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000316377		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000480038		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000464278	ENST00000378314		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000464278	ENST00000405808		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-intron	ENST00000464278	ENST00000434523		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21169723	-	FBXO11	chr2	48066908	-
intron-5UTR	ENST00000377122	ENST00000449193		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377122	ENST00000444772		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377122	ENST00000487107		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000417816	ENST00000449193		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000417816	ENST00000444772		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000417816	ENST00000487107		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377159	ENST00000449193		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377159	ENST00000444772		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377159	ENST00000487107		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377119	ENST00000449193		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377119	ENST00000444772		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377119	ENST00000487107		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000464278	ENST00000449193		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000464278	ENST00000444772		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000464278	ENST00000487107		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5UTR-3CDS	ENST00000282516	ENST00000251195		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000466308		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000373220		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000520551		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000282516	ENST00000318121		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-3CDS	ENST00000448238	ENST00000251195		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000466308		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000373220		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000520551		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000448238	ENST00000318121		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-3CDS	ENST00000504430	ENST00000251195		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000466308		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000373220		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000520551		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
intron-intron	ENST00000504430	ENST00000318121		TCGA	LD	BRCA	TCGA-A7-A13D-01A	NIPBL	chr5	36877280	+	CLSPN	chr1	36230927	-
5CDS-intron	ENST00000420696	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000420696	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000420696	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000420696	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000420696	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000401534	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000401534	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000401534	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000401534	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000559240	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000559240	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000559240	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000559240	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000367897	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000367897	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000367897	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000367897	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000540236	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-5UTR	ENST00000540236	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-3UTR	ENST00000540236	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
5CDS-intron	ENST00000540236	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000560641	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000560641	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000560641	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000560641	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000474046	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000474046	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000474046	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000474046	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000485769	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000485769	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000485769	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000485769	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000602281		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000539444		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000602873		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000366633		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000366636		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000535983		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000537876		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000540246	ENST00000366637		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-5UTR	ENST00000540246	ENST00000439617		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-3UTR	ENST00000540246	ENST00000427560		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
intron-intron	ENST00000540246	ENST00000317586		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PBX1	chr1	164532548	+	DISC1	chr1	232094574	+
In-frame	ENST00000323544	ENST00000326648		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PLEKHO2	chr15	65140941	+	ZNF609	chr15	64915026	+
5CDS-intron	ENST00000323544	ENST00000416172		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PLEKHO2	chr15	65140941	+	ZNF609	chr15	64915026	+
5CDS-intron	ENST00000323544	ENST00000559364		TCGA	LD	BRCA	TCGA-A7-A13D-01A	PLEKHO2	chr15	65140941	+	ZNF609	chr15	64915026	+
5UTR-3CDS	ENST00000346213	ENST00000309428		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000346213	ENST00000585894		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000346213	ENST00000543197		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000393860	ENST00000309428		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000393860	ENST00000585894		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000393860	ENST00000543197		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000547517	ENST00000309428		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000547517	ENST00000585894		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5UTR-3CDS	ENST00000547517	ENST00000543197		TCGA	LD	BRCA	TCGA-A7-A13D-01A	RAB5C	chr17	40306911	-	FAM134C	chr17	40737280	-
5CDS-5UTR	ENST00000321765	ENST00000341217		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000581407		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000582266		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000452648		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000582059		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000583953		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000577682		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000583522		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000321765	ENST00000581381		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SPAG5	chr17	26918716	-	FAM222B	chr17	27093725	-
5CDS-intron	ENST00000393651	ENST00000356362		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000393651	ENST00000469408		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000357311	ENST00000356362		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000357311	ENST00000469408		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000489828	ENST00000356362		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000489828	ENST00000469408		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000493638	ENST00000356362		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000493638	ENST00000469408		TCGA	LD	BRCA	TCGA-A7-A13D-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000397517	ENST00000548446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000420353		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000415113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000456903		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000548118		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000591397		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000397517	ENST00000328463		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000397517	ENST00000546661		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000548446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000420353		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000415113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000456903		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000548118		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000591397		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000539966	ENST00000328463		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000539966	ENST00000546661		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000548446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000420353		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000415113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000456903		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000548118		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000591397		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000481288	ENST00000328463		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-intron	ENST00000481288	ENST00000546661		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000548446		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000420353		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000415113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000456903		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000548118		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000591397		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-5UTR	ENST00000376547	ENST00000328463		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
intron-intron	ENST00000376547	ENST00000546661		TCGA	LD	BRCA	TCGA-A7-A13D-01A	STK24	chr13	99228999	-	ATF7	chr12	53994805	-
Frame-shit	ENST00000344749	ENST00000355272		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000344749	ENST00000356926		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000344749	ENST00000350812		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000344749	ENST00000345016		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000344749	ENST00000590683		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000355272		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000356926		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000350812		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000262965	ENST00000345016		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000262965	ENST00000590683		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000355272		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000356926		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000350812		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000453954	ENST00000345016		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000453954	ENST00000590683		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000355272		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000356926		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000350812		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
Frame-shit	ENST00000395423	ENST00000345016		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000395423	ENST00000590683		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000355272		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000356926		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000350812		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
In-frame	ENST00000588136	ENST00000345016		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-intron	ENST00000588136	ENST00000590683		TCGA	LD	BRCA	TCGA-A7-A13D-01A	TCF3	chr19	1621837	-	AP3D1	chr19	2111827	-
5CDS-3UTR	ENST00000207549	ENST00000307877		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-3UTR	ENST00000207549	ENST00000539137		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-intron	ENST00000207549	ENST00000355113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-3UTR	ENST00000207549	ENST00000602720		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-5UTR	ENST00000207549	ENST00000542536		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-3UTR	ENST00000412096	ENST00000307877		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-3UTR	ENST00000412096	ENST00000539137		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-intron	ENST00000412096	ENST00000355113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-3UTR	ENST00000412096	ENST00000602720		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
5CDS-5UTR	ENST00000412096	ENST00000542536		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
intron-3UTR	ENST00000587504	ENST00000307877		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
intron-3UTR	ENST00000587504	ENST00000539137		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
intron-intron	ENST00000587504	ENST00000355113		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
intron-3UTR	ENST00000587504	ENST00000602720		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
intron-5UTR	ENST00000587504	ENST00000542536		TCGA	LD	BRCA	TCGA-A7-A13D-01A	UNC13D	chr17	73829047	-	SRP68	chr17	74035423	-
3UTR-3CDS	ENST00000441740	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
3UTR-3CDS	ENST00000331559	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
3UTR-3CDS	ENST00000561096	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
3UTR-3CDS	ENST00000561293	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
intron-3CDS	ENST00000560253	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
3UTR-3CDS	ENST00000558555	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
intron-3CDS	ENST00000559524	ENST00000262962		TCGA	LD	BRCA	TCGA-A7-A13E-01A	MEIS3	chr19	47909717	-	CCDC94	chr19	4251024	+
In-frame	ENST00000313077	ENST00000261275		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	23000243	-	FAM189A1	chr15	29674035	-
5CDS-5UTR	ENST00000313077	ENST00000560050		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	23000243	-	FAM189A1	chr15	29674035	-
In-frame	ENST00000560848	ENST00000261275		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	23000243	-	FAM189A1	chr15	29674035	-
5CDS-5UTR	ENST00000560848	ENST00000560050		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	23000243	-	FAM189A1	chr15	29674035	-
In-frame	ENST00000435939	ENST00000261275		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	23000243	-	FAM189A1	chr15	29674035	-
5CDS-5UTR	ENST00000435939	ENST00000560050		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	23000243	-	FAM189A1	chr15	29674035	-
5CDS-intron	ENST00000313077	ENST00000549804		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000547292		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000424208		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000452731		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-3UTR	ENST00000313077	ENST00000554726		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000551631		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000459433		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000551361		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000553134		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000551938		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000384733		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000551077		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000546682		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000553108		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000384430		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000516123		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000553149		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000441592		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000365306		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000414175		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000456576		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000363358		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000424333		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000450809		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000453082		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000365067		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000313077	ENST00000390982		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-3UTR	ENST00000313077	ENST00000580438		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000549804		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000547292		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000424208		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000452731		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-3UTR	ENST00000560848	ENST00000554726		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000551631		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000459433		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000551361		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000553134		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000551938		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000384733		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000551077		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000546682		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000553108		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000384430		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000516123		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000553149		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000441592		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000365306		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000414175		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000456576		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000363358		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000424333		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000450809		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000453082		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000365067		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-intron	ENST00000560848	ENST00000390982		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-3UTR	ENST00000560848	ENST00000580438		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000549804		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000547292		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000424208		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000452731		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-3UTR	ENST00000435939	ENST00000554726		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000551631		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000459433		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000551361		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000553134		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000551938		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000384733		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000551077		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000546682		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000553108		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000384430		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000516123		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000553149		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000441592		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000365306		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000414175		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000456576		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000363358		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000424333		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000450809		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000453082		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000365067		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-intron	ENST00000435939	ENST00000390982		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
intron-3UTR	ENST00000435939	ENST00000580438		TCGA	LD	BRCA	TCGA-A7-A26F-01A	CYFIP1	chr15	22933876	-	SNHG14	chr15	25663935	+
5CDS-5UTR	ENST00000413566	ENST00000216445		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000413566	ENST00000422976		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000413566	ENST00000534126		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000413566	ENST00000526336		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000340918	ENST00000216445		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000340918	ENST00000422976		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000340918	ENST00000534126		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
5CDS-5UTR	ENST00000340918	ENST00000526336		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
intron-5UTR	ENST00000556911	ENST00000216445		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
intron-5UTR	ENST00000556911	ENST00000422976		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
intron-5UTR	ENST00000556911	ENST00000534126		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
intron-5UTR	ENST00000556911	ENST00000526336		TCGA	LD	BRCA	TCGA-A7-A26F-01A	EXOC5	chr14	57684700	-	C14orf105	chr14	57960460	-
In-frame	ENST00000281772	ENST00000233710		TCGA	LD	BRCA	TCGA-A7-A26F-01A	KANSL1L	chr2	210968828	-	ACADL	chr2	211085526	-
In-frame	ENST00000418791	ENST00000233710		TCGA	LD	BRCA	TCGA-A7-A26F-01A	KANSL1L	chr2	210968828	-	ACADL	chr2	211085526	-
In-frame	ENST00000452086	ENST00000233710		TCGA	LD	BRCA	TCGA-A7-A26F-01A	KANSL1L	chr2	210968828	-	ACADL	chr2	211085526	-
intron-3CDS	ENST00000429908	ENST00000233710		TCGA	LD	BRCA	TCGA-A7-A26F-01A	KANSL1L	chr2	210968828	-	ACADL	chr2	211085526	-
Frame-shit	ENST00000457374	ENST00000233710		TCGA	LD	BRCA	TCGA-A7-A26F-01A	KANSL1L	chr2	210968828	-	ACADL	chr2	211085526	-
intron-5UTR	ENST00000410396	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	RNU2-2P	chr11	62609161	-	RNU2-6P	chr13	46948606	-
intron-5UTR	ENST00000311713	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	WDR74	chr11	62609161	-	RNU2-6P	chr13	46948606	-
intron-5UTR	ENST00000278856	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	WDR74	chr11	62609161	-	RNU2-6P	chr13	46948606	-
intron-5UTR	ENST00000529106	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	WDR74	chr11	62609161	-	RNU2-6P	chr13	46948606	-
intron-5UTR	ENST00000525239	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	WDR74	chr11	62609161	-	RNU2-6P	chr13	46948606	-
intron-5UTR	ENST00000525752	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	WDR74	chr11	62609161	-	RNU2-6P	chr13	46948606	-
intron-5UTR	ENST00000540620	ENST00000411404		TCGA	LD	BRCA	TCGA-A7-A26F-01A	WDR74	chr11	62609161	-	RNU2-6P	chr13	46948606	-
Frame-shit	ENST00000295851	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000295851	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000295851	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
Frame-shit	ENST00000261017	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000261017	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000261017	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
Frame-shit	ENST00000430418	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000430418	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000430418	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
Frame-shit	ENST00000424558	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000424558	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000424558	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5UTR-3CDS	ENST00000261016	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5UTR-3UTR	ENST00000261016	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5UTR-3UTR	ENST00000261016	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
Frame-shit	ENST00000422511	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000422511	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
5CDS-3UTR	ENST00000422511	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-3CDS	ENST00000430574	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-3UTR	ENST00000430574	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-3UTR	ENST00000430574	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-3CDS	ENST00000261018	ENST00000356079		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-3UTR	ENST00000261018	ENST00000461371		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-3UTR	ENST00000261018	ENST00000429815		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ABI2	chr2	204193354	+	CYP20A1	chr2	204154488	+
intron-5UTR	ENST00000280772	ENST00000337910		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000280772	ENST00000357917		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-intron	ENST00000280772	ENST00000490827		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5CDS-5UTR	ENST00000373827	ENST00000337910		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5CDS-5UTR	ENST00000373827	ENST00000357917		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5CDS-intron	ENST00000373827	ENST00000490827		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000355288	ENST00000337910		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000355288	ENST00000357917		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-intron	ENST00000355288	ENST00000490827		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000503366	ENST00000337910		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000503366	ENST00000357917		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-intron	ENST00000503366	ENST00000490827		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5UTR-5UTR	ENST00000510382	ENST00000337910		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5UTR-5UTR	ENST00000510382	ENST00000357917		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5UTR-intron	ENST00000510382	ENST00000490827		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000460468	ENST00000337910		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-5UTR	ENST00000460468	ENST00000357917		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
intron-intron	ENST00000460468	ENST00000490827		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ANK3	chr10	62493021	-	RHOBTB1	chr10	62671310	-
5CDS-intron	ENST00000368346	ENST00000368315		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368346	ENST00000313695		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368346	ENST00000361247		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368346	ENST00000368316		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368346	ENST00000462460		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368346	ENST00000477754		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368346	ENST00000313667		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000392403	ENST00000368315		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000392403	ENST00000313695		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000392403	ENST00000361247		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000392403	ENST00000368316		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000392403	ENST00000462460		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000392403	ENST00000477754		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000392403	ENST00000313667		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000548830	ENST00000368315		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000548830	ENST00000313695		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000548830	ENST00000361247		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-5UTR	ENST00000548830	ENST00000368316		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-5UTR	ENST00000548830	ENST00000462460		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000548830	ENST00000477754		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000548830	ENST00000313667		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ASH1L	chr1	155408118	-	ARHGEF2	chr1	155952991	-
3UTR-3CDS	ENST00000461377	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-3CDS	ENST00000461377	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-5UTR	ENST00000461377	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-5UTR	ENST00000461377	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-3UTR	ENST00000461377	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000258781	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000258781	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000258781	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000258781	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000258781	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000544363	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000544363	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000544363	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000544363	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000544363	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-3CDS	ENST00000541586	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-3CDS	ENST00000541586	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-5UTR	ENST00000541586	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-5UTR	ENST00000541586	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-3UTR	ENST00000541586	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000475551	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000475551	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000475551	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000475551	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000475551	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000381112	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000381112	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000381112	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000381112	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000381112	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000474617	ENST00000451562		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000474617	ENST00000468812		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000474617	ENST00000489459		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000474617	ENST00000355968		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000474617	ENST00000480603		TCGA	LD	BRCA	TCGA-A7-A26G-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000367843	ENST00000359523		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367843	ENST00000392121		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367843	ENST00000474859		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367843	ENST00000403379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000359523		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000392121		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000474859		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000432587	ENST00000403379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000359523		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000392121		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000474859		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000312263	ENST00000403379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000359523		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000392121		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000474859		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367840	ENST00000403379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000359523		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000392121		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000474859		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-intron	ENST00000470919	ENST00000403379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000537045	ENST00000353891		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000537045	ENST00000263200		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000537045	ENST00000427926		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-intron	ENST00000537045	ENST00000442042		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000263196	ENST00000353891		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000263196	ENST00000263200		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000263196	ENST00000427926		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
5CDS-intron	ENST00000263196	ENST00000442042		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
In-frame	ENST00000545799	ENST00000353891		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
In-frame	ENST00000545799	ENST00000263200		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
In-frame	ENST00000545799	ENST00000427926		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
5CDS-intron	ENST00000545799	ENST00000442042		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000473832	ENST00000353891		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000473832	ENST00000263200		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000473832	ENST00000427926		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
intron-intron	ENST00000473832	ENST00000442042		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DGCR2	chr22	19076881	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000328771	ENST00000012443		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DHX34	chr19	47861377	+	PPP5C	chr19	46857005	+
5CDS-5UTR	ENST00000328771	ENST00000391919		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DHX34	chr19	47861377	+	PPP5C	chr19	46857005	+
3UTR-3CDS	ENST00000471451	ENST00000012443		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DHX34	chr19	47861377	+	PPP5C	chr19	46857005	+
3UTR-5UTR	ENST00000471451	ENST00000391919		TCGA	LD	BRCA	TCGA-A7-A26G-01A	DHX34	chr19	47861377	+	PPP5C	chr19	46857005	+
Frame-shit	ENST00000343813	ENST00000608083		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000343813	ENST00000377855		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000343813	ENST00000545482		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000343813	ENST00000361521		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000343813	ENST00000377842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000343813	ENST00000377845		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000343813	ENST00000541130		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000608083		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000377855		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000545482		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000361521		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000377842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000377845		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
intron-3CDS	ENST00000495791	ENST00000541130		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000608083		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000377855		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000545482		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000361521		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000377842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000377845		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
Frame-shit	ENST00000362035	ENST00000541130		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ICMT	chr1	6294946	-	ACOT7	chr1	6378638	-
5CDS-3UTR	ENST00000254654	ENST00000254658		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
5CDS-3UTR	ENST00000254654	ENST00000254657		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
5CDS-intron	ENST00000254654	ENST00000440245		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
5CDS-intron	ENST00000254654	ENST00000355768		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
intron-3UTR	ENST00000490837	ENST00000254658		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
intron-3UTR	ENST00000490837	ENST00000254657		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
intron-intron	ENST00000490837	ENST00000440245		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
intron-intron	ENST00000490837	ENST00000355768		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ILKAP	chr2	239090706	-	PER2	chr2	239157853	-
In-frame	ENST00000263409	ENST00000263408		TCGA	LD	BRCA	TCGA-A7-A26G-01A	LIFR	chr5	38493708	-	C9	chr5	39316131	-
5CDS-5UTR	ENST00000263409	ENST00000509186		TCGA	LD	BRCA	TCGA-A7-A26G-01A	LIFR	chr5	38493708	-	C9	chr5	39316131	-
Frame-shit	ENST00000453190	ENST00000263408		TCGA	LD	BRCA	TCGA-A7-A26G-01A	LIFR	chr5	38493708	-	C9	chr5	39316131	-
5CDS-5UTR	ENST00000453190	ENST00000509186		TCGA	LD	BRCA	TCGA-A7-A26G-01A	LIFR	chr5	38493708	-	C9	chr5	39316131	-
5UTR-3CDS	ENST00000503088	ENST00000263408		TCGA	LD	BRCA	TCGA-A7-A26G-01A	LIFR	chr5	38493708	-	C9	chr5	39316131	-
5UTR-5UTR	ENST00000503088	ENST00000509186		TCGA	LD	BRCA	TCGA-A7-A26G-01A	LIFR	chr5	38493708	-	C9	chr5	39316131	-
Frame-shit	ENST00000456935	ENST00000592204		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000456935	ENST00000393233		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000456935	ENST00000589272		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000456935	ENST00000322912		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000456935	ENST00000458671		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000221363	ENST00000592204		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000221363	ENST00000393233		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000221363	ENST00000589272		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000221363	ENST00000322912		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
Frame-shit	ENST00000221363	ENST00000458671		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
intron-3CDS	ENST00000495617	ENST00000592204		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
intron-3CDS	ENST00000495617	ENST00000393233		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
intron-3CDS	ENST00000495617	ENST00000589272		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
intron-3CDS	ENST00000495617	ENST00000322912		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
intron-3CDS	ENST00000495617	ENST00000458671		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MAN2B1	chr19	12772074	-	RTBDN	chr19	12939581	-
5CDS-intron	ENST00000373053	ENST00000398842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000373053	ENST00000398809		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000373053	ENST00000461841		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000373053	ENST00000299366		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000373053	ENST00000224721		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000373053	ENST00000398788		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000373053	ENST00000475158		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000398842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000398809		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000461841		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000299366		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000224721		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000398788		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000357157	ENST00000475158		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000398842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000398809		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000461841		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000299366		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000224721		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000398788		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000536019	ENST00000475158		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000398842		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000398809		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000461841		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000299366		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000224721		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000398788		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
intron-intron	ENST00000605416	ENST00000475158		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MCU	chr10	74452059	+	CDH23	chr10	73434869	+
5UTR-3CDS	ENST00000545708	ENST00000362005		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000545708	ENST00000370389		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000545708	ENST00000399546		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000545708	ENST00000394530		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000545708	ENST00000402388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-intron	ENST00000545708	ENST00000484781		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000540243	ENST00000362005		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000540243	ENST00000370389		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000540243	ENST00000399546		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000540243	ENST00000394530		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-3CDS	ENST00000540243	ENST00000402388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5UTR-intron	ENST00000540243	ENST00000484781		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370298	ENST00000362005		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370298	ENST00000370389		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370298	ENST00000399546		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370298	ENST00000394530		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370298	ENST00000402388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5CDS-intron	ENST00000370298	ENST00000484781		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
3UTR-3CDS	ENST00000471953	ENST00000362005		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
3UTR-3CDS	ENST00000471953	ENST00000370389		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
3UTR-3CDS	ENST00000471953	ENST00000399546		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
3UTR-3CDS	ENST00000471953	ENST00000394530		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
3UTR-3CDS	ENST00000471953	ENST00000402388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
3UTR-intron	ENST00000471953	ENST00000484781		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370303	ENST00000362005		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370303	ENST00000370389		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370303	ENST00000399546		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370303	ENST00000394530		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000370303	ENST00000402388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
5CDS-intron	ENST00000370303	ENST00000484781		TCGA	LD	BRCA	TCGA-A7-A26G-01A	MTF2	chr1	93545088	+	BRDT	chr1	92469971	+
Frame-shit	ENST00000356770	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000356770	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000356770	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000356770	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000356770	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000394830	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000394830	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000394830	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000394830	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000394830	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000296302	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000296302	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000296302	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000296302	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000296302	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000337303	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000337303	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000337303	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000337303	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000337303	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000410007	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000410007	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000410007	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000410007	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000410007	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000409057	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000409057	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000409057	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000409057	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000409057	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000409114	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000409114	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000409114	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000409114	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000409114	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
Frame-shit	ENST00000409767	ENST00000462138		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000409767	ENST00000423525		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000409767	ENST00000461139		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000409767	ENST00000423516		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000409767	ENST00000296289		TCGA	LD	BRCA	TCGA-A7-A26G-01A	PBRM1	chr3	52692215	-	TKT	chr3	53276258	-
In-frame	ENST00000361756	ENST00000355303		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000361756	ENST00000398543		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000361756	ENST00000538023		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000361756	ENST00000316296		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000361756	ENST00000530676		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000361756	ENST00000531349		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000361756	ENST00000525494		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
In-frame	ENST00000533380	ENST00000355303		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000533380	ENST00000398543		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000533380	ENST00000538023		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000533380	ENST00000316296		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000533380	ENST00000530676		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000533380	ENST00000531349		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000533380	ENST00000525494		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
In-frame	ENST00000393713	ENST00000355303		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000393713	ENST00000398543		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000393713	ENST00000538023		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000393713	ENST00000316296		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000393713	ENST00000530676		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000393713	ENST00000531349		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000393713	ENST00000525494		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-3CDS	ENST00000490867	ENST00000355303		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-5UTR	ENST00000490867	ENST00000398543		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-5UTR	ENST00000490867	ENST00000538023		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-5UTR	ENST00000490867	ENST00000316296		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-5UTR	ENST00000490867	ENST00000530676		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-intron	ENST00000490867	ENST00000531349		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
3UTR-intron	ENST00000490867	ENST00000525494		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-3CDS	ENST00000545854	ENST00000355303		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-5UTR	ENST00000545854	ENST00000398543		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-5UTR	ENST00000545854	ENST00000538023		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-5UTR	ENST00000545854	ENST00000316296		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-5UTR	ENST00000545854	ENST00000530676		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-intron	ENST00000545854	ENST00000531349		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-intron	ENST00000545854	ENST00000525494		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
In-frame	ENST00000530137	ENST00000355303		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000530137	ENST00000398543		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000530137	ENST00000538023		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000530137	ENST00000316296		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000530137	ENST00000530676		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000530137	ENST00000531349		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000530137	ENST00000525494		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF121	chr11	71671937	+	ANO1	chr11	69933858	+
5UTR-3CDS	ENST00000392894	ENST00000305354		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149216509	+
5UTR-3CDS	ENST00000344229	ENST00000305354		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149216509	+
intron-3CDS	ENST00000361785	ENST00000305354		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149216509	+
5CDS-intron	ENST00000417478	ENST00000396073		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
5CDS-3UTR	ENST00000417478	ENST00000472903		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-intron	ENST00000381006	ENST00000396073		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-3UTR	ENST00000381006	ENST00000472903		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-intron	ENST00000226328	ENST00000396073		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-3UTR	ENST00000226328	ENST00000472903		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-intron	ENST00000536664	ENST00000396073		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-3UTR	ENST00000536664	ENST00000472903		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-intron	ENST00000502653	ENST00000396073		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-3UTR	ENST00000502653	ENST00000472903		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-intron	ENST00000512331	ENST00000396073		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
intron-3UTR	ENST00000512331	ENST00000472903		TCGA	LD	BRCA	TCGA-A7-A26G-01A	RUFY3	chr4	71571011	+	ENAM	chr4	71527846	+
5CDS-3UTR	ENST00000397821	ENST00000379651		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000397821	ENST00000379643		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000397821	ENST00000543767		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000397821	ENST00000443379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000397821	ENST00000452324		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-intron	ENST00000397821	ENST00000466145		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379716	ENST00000379651		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379716	ENST00000379643		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379716	ENST00000543767		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379716	ENST00000443379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379716	ENST00000452324		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-intron	ENST00000379716	ENST00000466145		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379698	ENST00000379651		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379698	ENST00000379643		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379698	ENST00000543767		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379698	ENST00000443379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000379698	ENST00000452324		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-intron	ENST00000379698	ENST00000466145		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000541422	ENST00000379651		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000541422	ENST00000379643		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000541422	ENST00000543767		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000541422	ENST00000443379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000541422	ENST00000452324		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-intron	ENST00000541422	ENST00000466145		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000379697	ENST00000379651		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000379697	ENST00000379643		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000379697	ENST00000543767		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000379697	ENST00000443379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-3UTR	ENST00000379697	ENST00000452324		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
5CDS-intron	ENST00000379697	ENST00000466145		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000477102	ENST00000379651		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000477102	ENST00000379643		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000477102	ENST00000543767		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000477102	ENST00000443379		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-3UTR	ENST00000477102	ENST00000452324		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
intron-intron	ENST00000477102	ENST00000466145		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SH3KBP1	chrX	19854243	-	MAP7D2	chrX	20026516	-
Frame-shit	ENST00000327367	ENST00000319194		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
Frame-shit	ENST00000327367	ENST00000441424		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
Frame-shit	ENST00000327367	ENST00000319212		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
5CDS-intron	ENST00000327367	ENST00000568874		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000559092	ENST00000319194		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000559092	ENST00000441424		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000559092	ENST00000319212		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-intron	ENST00000559092	ENST00000568874		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000540846	ENST00000319194		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000540846	ENST00000441424		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000540846	ENST00000319212		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-intron	ENST00000540846	ENST00000568874		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000439724	ENST00000319194		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000439724	ENST00000441424		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000439724	ENST00000319212		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-intron	ENST00000439724	ENST00000568874		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000537194	ENST00000319194		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000537194	ENST00000441424		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-3CDS	ENST00000537194	ENST00000319212		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
intron-intron	ENST00000537194	ENST00000568874		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SMAD3	chr15	67358698	+	DIS3L	chr15	66604062	+
Frame-shit	ENST00000263736	ENST00000336838		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000263736	ENST00000263630		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000263736	ENST00000436346		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000263736	ENST00000413716		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
5CDS-intron	ENST00000263736	ENST00000422883		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
5CDS-5UTR	ENST00000263736	ENST00000471947		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000535761	ENST00000336838		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000535761	ENST00000263630		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000535761	ENST00000436346		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
Frame-shit	ENST00000535761	ENST00000413716		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
5CDS-intron	ENST00000535761	ENST00000422883		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
5CDS-5UTR	ENST00000535761	ENST00000471947		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
intron-3CDS	ENST00000490133	ENST00000336838		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
intron-3CDS	ENST00000490133	ENST00000263630		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
intron-3CDS	ENST00000490133	ENST00000436346		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
intron-3CDS	ENST00000490133	ENST00000413716		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
intron-intron	ENST00000490133	ENST00000422883		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
intron-5UTR	ENST00000490133	ENST00000471947		TCGA	LD	BRCA	TCGA-A7-A26G-01A	SRBD1	chr2	45704132	-	CCDC88A	chr2	55646052	-
In-frame	ENST00000355528	ENST00000262613		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000355528	ENST00000413388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000397466	ENST00000262613		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000397466	ENST00000413388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000539345	ENST00000262613		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000539345	ENST00000413388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
intron-3CDS	ENST00000576691	ENST00000262613		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
intron-5UTR	ENST00000576691	ENST00000413388		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000263801	ENST00000251076		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000263801	ENST00000543779		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000263801	ENST00000449909		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
5CDS-intron	ENST00000263801	ENST00000560421		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000382039	ENST00000251076		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000382039	ENST00000543779		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000382039	ENST00000449909		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
5CDS-intron	ENST00000382039	ENST00000560421		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000382044	ENST00000251076		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000382044	ENST00000543779		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000382044	ENST00000449909		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
5CDS-intron	ENST00000382044	ENST00000560421		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000450115	ENST00000251076		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000450115	ENST00000543779		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000450115	ENST00000449909		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
5CDS-intron	ENST00000450115	ENST00000560421		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
intron-3CDS	ENST00000605155	ENST00000251076		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
intron-3CDS	ENST00000605155	ENST00000543779		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
intron-3CDS	ENST00000605155	ENST00000449909		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
intron-intron	ENST00000605155	ENST00000560421		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TP53BP1	chr15	43724392	-	DMXL2	chr15	51809364	-
In-frame	ENST00000305364	ENST00000356537		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TRIM35	chr8	27168318	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000305364	ENST00000539095		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TRIM35	chr8	27168318	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000305364	ENST00000522915		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TRIM35	chr8	27168318	-	CCDC25	chr8	27610104	-
In-frame	ENST00000521253	ENST00000356537		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TRIM35	chr8	27168318	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000521253	ENST00000539095		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TRIM35	chr8	27168318	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000521253	ENST00000522915		TCGA	LD	BRCA	TCGA-A7-A26G-01A	TRIM35	chr8	27168318	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000293771	ENST00000586683		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000252445		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000587806		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000589171		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000591674		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000586120		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000590700		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000293771	ENST00000591912		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000586683		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000252445		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000587806		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000589171		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000591674		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000586120		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000590700		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000593191	ENST00000591912		TCGA	LD	BRCA	TCGA-A7-A26G-01A	ZNF653	chr19	11606765	-	ELOF1	chr19	11665180	-
Frame-shit	ENST00000271332	ENST00000369787		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
Frame-shit	ENST00000271332	ENST00000413138		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
Frame-shit	ENST00000271332	ENST00000438661		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
5CDS-intron	ENST00000271332	ENST00000412512		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
3UTR-3CDS	ENST00000498157	ENST00000369787		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
3UTR-3CDS	ENST00000498157	ENST00000413138		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
3UTR-3CDS	ENST00000498157	ENST00000438661		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
3UTR-intron	ENST00000498157	ENST00000412512		TCGA	LD	BRCA	TCGA-A7-A26H-01A	CELSR2	chr1	109816292	+	KCNC4	chr1	110765586	+
Frame-shit	ENST00000546079	ENST00000301146		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000546079	ENST00000291764		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000541297	ENST00000301146		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000541297	ENST00000291764		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000337392	ENST00000301146		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000337392	ENST00000291764		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
3UTR-3CDS	ENST00000589158	ENST00000301146		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
3UTR-3CDS	ENST00000589158	ENST00000291764		TCGA	LD	BRCA	TCGA-A7-A26I-01A	CLPTM1	chr19	45488561	+	CYP2A7	chr19	41386533	-
Frame-shit	ENST00000366923	ENST00000445597		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
Frame-shit	ENST00000366923	ENST00000430092		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
Frame-shit	ENST00000366923	ENST00000439375		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000400952		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000366849		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000366850		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000498360		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
5CDS-intron	ENST00000366923	ENST00000366848		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-3CDS	ENST00000468487	ENST00000445597		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-3CDS	ENST00000468487	ENST00000430092		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-3CDS	ENST00000468487	ENST00000439375		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000400952		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000366849		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000366850		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000498360		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000468487	ENST00000366848		TCGA	LD	BRCA	TCGA-A7-A26I-01A	EPRS	chr1	220160484	-	DNAH14	chr1	225506285	+
intron-intron	ENST00000390868	ENST00000516290		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000362684		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000606575		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000606574		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000580281		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000577618		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000584018		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000579513		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000580213		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000582426		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000581688		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000582199		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000584937		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000577825		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000580475		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000579987		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000578102		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000581325		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000578508		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000583575		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000578081		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-intron	ENST00000390868	ENST00000459549		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-77P	chr15	82466616	-	U1	chr1	16993426	+
intron-5UTR	ENST00000459274	ENST00000365477		TCGA	LD	BRCA	TCGA-A7-A26I-01A	RNU1-88P	chr6	36607352	-	RNU1-16P	chr13	114133295	-
Frame-shit	ENST00000319380	ENST00000446526		TCGA	LD	BRCA	TCGA-A7-A26I-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
Frame-shit	ENST00000319380	ENST00000324684		TCGA	LD	BRCA	TCGA-A7-A26I-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
5CDS-intron	ENST00000319380	ENST00000588364		TCGA	LD	BRCA	TCGA-A7-A26I-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000587581	ENST00000446526		TCGA	LD	BRCA	TCGA-A7-A26I-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000587581	ENST00000324684		TCGA	LD	BRCA	TCGA-A7-A26I-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-intron	ENST00000587581	ENST00000588364		TCGA	LD	BRCA	TCGA-A7-A26I-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
Frame-shit	ENST00000244926	ENST00000539229		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCGB1D2	chr11	62009834	+	ALDH3B1	chr11	67785997	+
Frame-shit	ENST00000244926	ENST00000316367		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCGB1D2	chr11	62009834	+	ALDH3B1	chr11	67785997	+
5CDS-intron	ENST00000244926	ENST00000342456		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCGB1D2	chr11	62009834	+	ALDH3B1	chr11	67785997	+
5CDS-intron	ENST00000244926	ENST00000007633		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCGB1D2	chr11	62009834	+	ALDH3B1	chr11	67785997	+
5CDS-3UTR	ENST00000244926	ENST00000434449		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCGB1D2	chr11	62009834	+	ALDH3B1	chr11	67785997	+
intron-intron	ENST00000456518	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000456518	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000456518	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000456518	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000456518	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397174	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397174	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397174	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397174	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397174	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000402904	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000402904	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000402904	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000402904	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000402904	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361191	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361191	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361191	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361191	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361191	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397171	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397171	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397171	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397171	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000397171	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361705	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361705	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361705	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361705	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000361705	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000326197	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000326197	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000326197	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000326197	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000326197	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372595	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372595	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372595	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372595	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372595	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5CDS-intron	ENST00000337495	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5CDS-intron	ENST00000337495	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5CDS-intron	ENST00000337495	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5CDS-intron	ENST00000337495	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5CDS-intron	ENST00000337495	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372596	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372596	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372596	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372596	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372596	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372597	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372597	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372597	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372597	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
5UTR-intron	ENST00000372597	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000472037	ENST00000324350		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000472037	ENST00000373191		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000472037	ENST00000397828		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000472037	ENST00000246314		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
intron-intron	ENST00000472037	ENST00000471099		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SCMH1	chr1	41626547	-	AGO3	chr1	36492715	+
In-frame	ENST00000373795	ENST00000409673		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
In-frame	ENST00000373795	ENST00000272732		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
5CDS-intron	ENST00000373795	ENST00000548921		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
In-frame	ENST00000546138	ENST00000409673		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
In-frame	ENST00000546138	ENST00000272732		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
5CDS-intron	ENST00000546138	ENST00000548921		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
5UTR-3CDS	ENST00000466448	ENST00000409673		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
5UTR-3CDS	ENST00000466448	ENST00000272732		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
5UTR-intron	ENST00000466448	ENST00000548921		TCGA	LD	BRCA	TCGA-A7-A26J-01A	SRSF4	chr1	29508158	-	SCRN3	chr2	175264650	+
5CDS-intron	ENST00000409979	ENST00000339235		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-5UTR	ENST00000409979	ENST00000543278		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-intron	ENST00000310078	ENST00000339235		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-5UTR	ENST00000310078	ENST00000543278		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-intron	ENST00000409315	ENST00000339235		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-5UTR	ENST00000409315	ENST00000543278		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-intron	ENST00000373671	ENST00000339235		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-5UTR	ENST00000373671	ENST00000543278		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-intron	ENST00000409171	ENST00000339235		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
5CDS-5UTR	ENST00000409171	ENST00000543278		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
intron-intron	ENST00000486932	ENST00000339235		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
intron-5UTR	ENST00000486932	ENST00000543278		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	AGFG1	chr2	228401709	+	FBXL14	chr12	1696702	-
intron-5UTR	ENST00000566717	ENST00000535206		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000566717	ENST00000379731		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-intron	ENST00000566717	ENST00000541851		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000313339	ENST00000535206		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000313339	ENST00000379731		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-intron	ENST00000313339	ENST00000541851		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000357072	ENST00000535206		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000357072	ENST00000379731		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-intron	ENST00000357072	ENST00000541851		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000607974	ENST00000535206		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000607974	ENST00000379731		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-intron	ENST00000607974	ENST00000541851		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
5CDS-5UTR	ENST00000399703	ENST00000535206		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
5CDS-5UTR	ENST00000399703	ENST00000379731		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
5CDS-intron	ENST00000399703	ENST00000541851		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000475234	ENST00000535206		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-5UTR	ENST00000475234	ENST00000379731		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
intron-intron	ENST00000475234	ENST00000541851		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ANKRD18A	chr9	38571355	-	B4GALT1	chr9	33167171	-
5CDS-3UTR	ENST00000535206	ENST00000471864		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000535206	ENST00000484285		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000535206	ENST00000377680		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000379731	ENST00000471864		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000379731	ENST00000484285		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000379731	ENST00000377680		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000541851	ENST00000471864		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000541851	ENST00000484285		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000541851	ENST00000377680		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	B4GALT1	chr9	33135187	-	FAM201A	chr9	38621829	+
Frame-shit	ENST00000423902	ENST00000541428		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
In-frame	ENST00000423902	ENST00000379454		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000523897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000522919		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000356457		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000518068		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000517903		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000445642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000517847		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000522835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000517856		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000389204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000522603		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000379449		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000423902	ENST00000517661		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000524602	ENST00000541428		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000524602	ENST00000379454		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000523897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000522919		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000356457		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000518068		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000517903		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000445642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000517847		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000522835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000517856		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000389204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000522603		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000379449		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000524602	ENST00000517661		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
Frame-shit	ENST00000525508	ENST00000541428		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
In-frame	ENST00000525508	ENST00000379454		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000523897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000522919		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000356457		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000518068		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000517903		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000445642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000517847		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000522835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000517856		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000389204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000522603		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000379449		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
5CDS-intron	ENST00000525508	ENST00000517661		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000529472	ENST00000541428		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-3CDS	ENST00000529472	ENST00000379454		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000523897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000522919		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000356457		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000518068		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000517903		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000445642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000517847		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000522835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000517856		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000389204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000522603		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000379449		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
intron-intron	ENST00000529472	ENST00000517661		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	CHD7	chr8	61693989	+	ASPH	chr8	62416068	-
In-frame	ENST00000355832	ENST00000371941		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
In-frame	ENST00000355832	ENST00000396220		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
5CDS-intron	ENST00000355832	ENST00000496915		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-3CDS	ENST00000542458	ENST00000371941		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-3CDS	ENST00000542458	ENST00000396220		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-intron	ENST00000542458	ENST00000496915		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-3CDS	ENST00000465653	ENST00000371941		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-3CDS	ENST00000465653	ENST00000396220		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-intron	ENST00000465653	ENST00000496915		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ERCC6	chr10	50736463	-	PREX1	chr20	47324959	-
intron-3CDS	ENST00000405402	ENST00000589977		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000591571		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000586738		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000588783		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000586752		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000588302		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000590964		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000341249		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000405402	ENST00000588822		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-intron	ENST00000405402	ENST00000586200		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
Frame-shit	ENST00000253458	ENST00000589977		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000591571		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000586738		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000588783		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000586752		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000588302		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000590964		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000341249		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000253458	ENST00000588822		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-intron	ENST00000253458	ENST00000586200		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
Frame-shit	ENST00000393243	ENST00000589977		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000591571		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000586738		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000588783		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000586752		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000588302		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000590964		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000341249		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-5UTR	ENST00000393243	ENST00000588822		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
5CDS-intron	ENST00000393243	ENST00000586200		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-3CDS	ENST00000471070	ENST00000589977		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000591571		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000586738		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000588783		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000586752		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000588302		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000590964		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000341249		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-5UTR	ENST00000471070	ENST00000588822		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
intron-intron	ENST00000471070	ENST00000586200		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	GSE1	chr16	85647004	+	METTL23	chr17	74729060	+
Frame-shit	ENST00000378372	ENST00000081029		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	HSPA14	chr10	14882156	+	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000378372	ENST00000538315		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	HSPA14	chr10	14882156	+	MRPS35	chr12	27888380	+
3UTR-3CDS	ENST00000493863	ENST00000081029		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	HSPA14	chr10	14882156	+	MRPS35	chr12	27888380	+
3UTR-intron	ENST00000493863	ENST00000538315		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	HSPA14	chr10	14882156	+	MRPS35	chr12	27888380	+
Frame-shit	ENST00000437161	ENST00000081029		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	HSPA14	chr10	14882156	+	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000437161	ENST00000538315		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	HSPA14	chr10	14882156	+	MRPS35	chr12	27888380	+
3UTR-3CDS	ENST00000476521	ENST00000446120		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
3UTR-3CDS	ENST00000476521	ENST00000271227		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
3UTR-3CDS	ENST00000476521	ENST00000527077		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
3UTR-3CDS	ENST00000476521	ENST00000529450		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
3UTR-3CDS	ENST00000476521	ENST00000467909		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
3UTR-3CDS	ENST00000476521	ENST00000532427		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
3UTR-3UTR	ENST00000476521	ENST00000530397		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000370751	ENST00000446120		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000370751	ENST00000271227		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000370751	ENST00000527077		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000370751	ENST00000529450		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000370751	ENST00000467909		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000370751	ENST00000532427		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3UTR	ENST00000370751	ENST00000530397		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000342282	ENST00000446120		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000342282	ENST00000271227		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000342282	ENST00000527077		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000342282	ENST00000529450		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000342282	ENST00000467909		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3CDS	ENST00000342282	ENST00000532427		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
5UTR-3UTR	ENST00000342282	ENST00000530397		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	IFI44L	chr1	79086256	+	SLC44A3	chr1	95322891	+
Frame-shit	ENST00000528896	ENST00000389934		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000528896	ENST00000349033		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000528896	ENST00000240361		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
5CDS-intron	ENST00000528896	ENST00000584699		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000544884	ENST00000389934		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000544884	ENST00000349033		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000544884	ENST00000240361		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
5CDS-intron	ENST00000544884	ENST00000584699		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000389003	ENST00000389934		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000389003	ENST00000349033		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
Frame-shit	ENST00000389003	ENST00000240361		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
5CDS-intron	ENST00000389003	ENST00000584699		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
intron-3CDS	ENST00000579924	ENST00000389934		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
intron-3CDS	ENST00000579924	ENST00000349033		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
intron-3CDS	ENST00000579924	ENST00000240361		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
intron-intron	ENST00000579924	ENST00000584699		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	KIAA0100	chr17	26965270	-	TEX14	chr17	56692706	-
5CDS-3UTR	ENST00000398238	ENST00000465846		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000476204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000474040		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000467155		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000480872		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000429755		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000492897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000487849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000481995		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000460041		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000474324		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000398238	ENST00000477144		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000466037		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000491264		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000398238	ENST00000494420		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000465846		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000476204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000474040		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000467155		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000480872		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000429755		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000492897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000487849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000481995		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000460041		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000474324		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000225282	ENST00000477144		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000466037		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000491264		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000225282	ENST00000494420		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000465846		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000476204		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000474040		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000467155		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000480872		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000429755		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000492897		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000487849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000481995		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000460041		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000474324		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000575068	ENST00000477144		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000466037		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000491264		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000575068	ENST00000494420		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	NSF	chr17	44751979	+	HOXB-AS3	chr17	46677809	+
intron-3CDS	ENST00000336578	ENST00000225171		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000336578	ENST00000483798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000336578	ENST00000339758		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000358769	ENST00000225171		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000358769	ENST00000483798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000358769	ENST00000339758		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000309049	ENST00000225171		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000309049	ENST00000483798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000309049	ENST00000339758		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000432941	ENST00000225171		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000432941	ENST00000483798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000432941	ENST00000339758		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000495025	ENST00000225171		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000495025	ENST00000483798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000495025	ENST00000339758		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	PBLD	chr10	70066518	-	DNAJC12	chr10	69583150	-
5UTR-3CDS	ENST00000381352	ENST00000358495		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000381352	ENST00000430095		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000381352	ENST00000539046		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000381352	ENST00000536177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000381352	ENST00000544742		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000381352	ENST00000541619		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000381352	ENST00000535376		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000381352	ENST00000545564		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000405154	ENST00000358495		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000405154	ENST00000430095		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000405154	ENST00000539046		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000405154	ENST00000536177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000405154	ENST00000544742		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000405154	ENST00000541619		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000405154	ENST00000535376		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000405154	ENST00000545564		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000542865	ENST00000358495		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000542865	ENST00000430095		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000542865	ENST00000539046		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000542865	ENST00000536177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000542865	ENST00000544742		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000542865	ENST00000541619		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000542865	ENST00000535376		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000542865	ENST00000545564		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000541490	ENST00000358495		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000541490	ENST00000430095		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000541490	ENST00000539046		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-3CDS	ENST00000541490	ENST00000536177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000541490	ENST00000544742		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000541490	ENST00000541619		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000541490	ENST00000535376		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
5UTR-intron	ENST00000541490	ENST00000545564		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000282884	ENST00000358495		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000282884	ENST00000430095		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000282884	ENST00000539046		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-3CDS	ENST00000282884	ENST00000536177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000282884	ENST00000544742		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000282884	ENST00000541619		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000282884	ENST00000535376		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
intron-intron	ENST00000282884	ENST00000545564		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-3CDS	ENST00000538081	ENST00000358495		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-3CDS	ENST00000538081	ENST00000430095		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-3CDS	ENST00000538081	ENST00000539046		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-3CDS	ENST00000538081	ENST00000536177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-intron	ENST00000538081	ENST00000544742		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-intron	ENST00000538081	ENST00000541619		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-intron	ENST00000538081	ENST00000535376		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
3UTR-intron	ENST00000538081	ENST00000545564		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RASSF8	chr12	26148063	+	RAD52	chr12	1036429	-
Frame-shit	ENST00000423245	ENST00000392476		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000423245	ENST00000430767		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000423245	ENST00000564509		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000423245	ENST00000585618		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000423245	ENST00000413679		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000423245	ENST00000436233		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000423245	ENST00000443798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000423245	ENST00000591437		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000423245	ENST00000431431		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000317905	ENST00000392476		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000317905	ENST00000430767		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000317905	ENST00000564509		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000317905	ENST00000585618		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000317905	ENST00000413679		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000317905	ENST00000436233		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000317905	ENST00000443798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000317905	ENST00000591437		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000317905	ENST00000431431		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-3CDS	ENST00000420326	ENST00000392476		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-3CDS	ENST00000420326	ENST00000430767		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000420326	ENST00000564509		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000420326	ENST00000585618		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000420326	ENST00000413679		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000420326	ENST00000436233		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000420326	ENST00000443798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-5UTR	ENST00000420326	ENST00000591437		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-5UTR	ENST00000420326	ENST00000431431		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000340830	ENST00000392476		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000340830	ENST00000430767		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000340830	ENST00000564509		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000340830	ENST00000585618		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000340830	ENST00000413679		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000340830	ENST00000436233		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000340830	ENST00000443798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000340830	ENST00000591437		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000340830	ENST00000431431		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000584999	ENST00000392476		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
Frame-shit	ENST00000584999	ENST00000430767		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000584999	ENST00000564509		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000584999	ENST00000585618		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000584999	ENST00000413679		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000584999	ENST00000436233		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-intron	ENST00000584999	ENST00000443798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000584999	ENST00000591437		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
5CDS-5UTR	ENST00000584999	ENST00000431431		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-3CDS	ENST00000443199	ENST00000392476		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-3CDS	ENST00000443199	ENST00000430767		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000443199	ENST00000564509		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000443199	ENST00000585618		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000443199	ENST00000413679		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000443199	ENST00000436233		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-intron	ENST00000443199	ENST00000443798		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-5UTR	ENST00000443199	ENST00000591437		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
intron-5UTR	ENST00000443199	ENST00000431431		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	RECQL5	chr17	73647266	-	SEC14L1	chr17	75186885	+
In-frame	ENST00000306357	ENST00000256216		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000306357	ENST00000515320		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000306357	ENST00000510025		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000306357	ENST00000504811		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000306357	ENST00000414835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000306357	ENST00000513628		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000306357	ENST00000509514		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000306357	ENST00000522415		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000574431	ENST00000256216		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000574431	ENST00000515320		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000574431	ENST00000510025		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000574431	ENST00000504811		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000574431	ENST00000414835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000574431	ENST00000513628		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000574431	ENST00000509514		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000574431	ENST00000522415		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-3CDS	ENST00000573373	ENST00000256216		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000573373	ENST00000515320		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-5UTR	ENST00000573373	ENST00000510025		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-5UTR	ENST00000573373	ENST00000504811		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-5UTR	ENST00000573373	ENST00000414835		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000573373	ENST00000513628		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000573373	ENST00000509514		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000573373	ENST00000522415		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	STX8	chr17	9395146	-	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000389934	ENST00000394642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000389934	ENST00000579849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000389934	ENST00000578289		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000349033	ENST00000394642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000349033	ENST00000579849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000349033	ENST00000578289		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000240361	ENST00000394642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000240361	ENST00000579849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000240361	ENST00000578289		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
intron-3CDS	ENST00000584699	ENST00000394642		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
intron-3CDS	ENST00000584699	ENST00000579849		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
intron-3CDS	ENST00000584699	ENST00000578289		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TEX14	chr17	56692593	-	TMEM98	chr17	31263350	+
Frame-shit	ENST00000394642	ENST00000455756		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000394642	ENST00000418177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000394642	ENST00000305447		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000394642	ENST00000305432		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000394642	ENST00000393297		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
5CDS-intron	ENST00000394642	ENST00000393294		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000579849	ENST00000455756		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000579849	ENST00000418177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000579849	ENST00000305447		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000579849	ENST00000305432		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000579849	ENST00000393297		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
5CDS-intron	ENST00000579849	ENST00000393294		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000578289	ENST00000455756		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000578289	ENST00000418177		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000578289	ENST00000305447		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000578289	ENST00000305432		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
Frame-shit	ENST00000578289	ENST00000393297		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
5CDS-intron	ENST00000578289	ENST00000393294		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	TMEM98	chr17	31263465	+	GRM5	chr11	88301160	-
5CDS-intron	ENST00000343979	ENST00000221486		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ZNF136	chr19	12274021	+	RNASEH2A	chr19	12914918	+
5UTR-intron	ENST00000398616	ENST00000221486		TCGA	LD	BRCA	TCGA-A7-A2KD-01A	ZNF136	chr19	12274021	+	RNASEH2A	chr19	12914918	+
Frame-shit	ENST00000347053	ENST00000409063		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
Frame-shit	ENST00000347053	ENST00000312428		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
5CDS-intron	ENST00000347053	ENST00000410072		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
5CDS-intron	ENST00000347053	ENST00000484183		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
Frame-shit	ENST00000297135	ENST00000409063		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
Frame-shit	ENST00000297135	ENST00000312428		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
5CDS-intron	ENST00000297135	ENST00000410072		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
5CDS-intron	ENST00000297135	ENST00000484183		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
Frame-shit	ENST00000393603	ENST00000409063		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
Frame-shit	ENST00000393603	ENST00000312428		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
5CDS-intron	ENST00000393603	ENST00000410072		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
5CDS-intron	ENST00000393603	ENST00000484183		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
intron-3CDS	ENST00000475638	ENST00000409063		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
intron-3CDS	ENST00000475638	ENST00000312428		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
intron-intron	ENST00000475638	ENST00000410072		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
intron-intron	ENST00000475638	ENST00000484183		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	COG5	chr7	106964885	-	DNAH7	chr2	196651895	-
Frame-shit	ENST00000302279	ENST00000335987		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
5CDS-3UTR	ENST00000302279	ENST00000531907		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
5CDS-5UTR	ENST00000302279	ENST00000532448		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
Frame-shit	ENST00000342116	ENST00000335987		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
5CDS-3UTR	ENST00000342116	ENST00000531907		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
5CDS-5UTR	ENST00000342116	ENST00000532448		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
3UTR-3CDS	ENST00000524546	ENST00000335987		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
3UTR-3UTR	ENST00000524546	ENST00000531907		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
3UTR-5UTR	ENST00000524546	ENST00000532448		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
intron-3CDS	ENST00000529687	ENST00000335987		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
intron-3UTR	ENST00000529687	ENST00000531907		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
intron-5UTR	ENST00000529687	ENST00000532448		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	FNTA	chr8	42911689	+	OVOL1	chr11	65561502	+
5CDS-5UTR	ENST00000349155	ENST00000216115		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	TBX3	chr12	115120617	-	BIK	chr22	43520022	+
5CDS-5UTR	ENST00000257566	ENST00000216115		TCGA	LD	BRCA	TCGA-A7-A3IZ-01A	TBX3	chr12	115120617	-	BIK	chr22	43520022	+
intron-3CDS	ENST00000272928	ENST00000299957		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
intron-3UTR	ENST00000272928	ENST00000360824		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
intron-3UTR	ENST00000272928	ENST00000345795		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
intron-intron	ENST00000272928	ENST00000429162		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
In-frame	ENST00000264613	ENST00000546136		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000381381		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000309359		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000451604		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000537393		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000541536		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000396007		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000545921		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000541847		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000441133		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000536850		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000546136		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000381381		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000309359		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000451604		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000537393		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000541536		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000396007		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000545921		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000541847		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000441133		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000536850		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
Frame-shit	ENST00000361217	ENST00000368575		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	DENND4B	chr1	153913380	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000361217	ENST00000462680		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	DENND4B	chr1	153913380	-	RAB13	chr1	153957257	-
intron-3CDS	ENST00000474386	ENST00000368575		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	DENND4B	chr1	153913380	-	RAB13	chr1	153957257	-
intron-5UTR	ENST00000474386	ENST00000462680		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	DENND4B	chr1	153913380	-	RAB13	chr1	153957257	-
5CDS-3UTR	ENST00000541979	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000541979	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000541979	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000541979	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000541979	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000465038	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000465038	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000465038	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000465038	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000465038	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000352853	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000352853	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000352853	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000352853	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000352853	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371438	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371438	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371438	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371438	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000371438	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371436	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371436	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371436	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371436	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000371436	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000576263	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000576263	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000576263	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000576263	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000576263	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371432	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371432	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371432	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000371432	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000371432	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000359524	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000359524	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000359524	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-3UTR	ENST00000359524	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
5CDS-intron	ENST00000359524	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
intron-3UTR	ENST00000483243	ENST00000382778		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
intron-3UTR	ENST00000483243	ENST00000351808		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
intron-3UTR	ENST00000483243	ENST00000319980		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
intron-3UTR	ENST00000483243	ENST00000537103		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
intron-intron	ENST00000483243	ENST00000461115		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21265193	+
In-frame	ENST00000234677	ENST00000369939		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000234677	ENST00000529753		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000234677	ENST00000369938		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000369923	ENST00000369939		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000369923	ENST00000529753		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000369923	ENST00000369938		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000468588	ENST00000369939		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000468588	ENST00000529753		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-intron	ENST00000468588	ENST00000369938		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5UTR-3CDS	ENST00000341259	ENST00000261726		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
5UTR-intron	ENST00000341259	ENST00000551604		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
intron-3CDS	ENST00000538307	ENST00000261726		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
intron-intron	ENST00000538307	ENST00000551604		TCGA	LD	BRCA	TCGA-A7-A3J0-01A	SH2B3	chr12	111844081	+	CUX2	chr12	111757816	+
Frame-shit	ENST00000428304	ENST00000408907		TCGA	LD	BRCA	TCGA-A7-A3J1-01A	ABHD4	chr14	23078816	+	PSMB11	chr14	23511555	+
intron-3CDS	ENST00000544562	ENST00000408907		TCGA	LD	BRCA	TCGA-A7-A3J1-01A	ABHD4	chr14	23078816	+	PSMB11	chr14	23511555	+
In-frame	ENST00000370902	ENST00000399273		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000370902	ENST00000443444		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370902	ENST00000456009		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370902	ENST00000360524		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370902	ENST00000340621		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370902	ENST00000436374		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000370886	ENST00000399273		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000370886	ENST00000443444		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370886	ENST00000456009		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370886	ENST00000360524		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370886	ENST00000340621		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370886	ENST00000436374		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000370885	ENST00000399273		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000370885	ENST00000443444		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370885	ENST00000456009		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370885	ENST00000360524		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370885	ENST00000340621		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000370885	ENST00000436374		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000485122	ENST00000399273		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000485122	ENST00000443444		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000485122	ENST00000456009		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000485122	ENST00000360524		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000485122	ENST00000340621		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5CDS-intron	ENST00000485122	ENST00000436374		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5UTR-3CDS	ENST00000471049	ENST00000399273		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5UTR-3CDS	ENST00000471049	ENST00000443444		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5UTR-intron	ENST00000471049	ENST00000456009		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5UTR-intron	ENST00000471049	ENST00000360524		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5UTR-intron	ENST00000471049	ENST00000340621		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
5UTR-intron	ENST00000471049	ENST00000436374		TCGA	LD	BRCA	TCGA-A7-A3RF-01A	EXOSC1	chr10	99205489	-	CCDC144A	chr17	16675291	+
In-frame	ENST00000331738	ENST00000267202		TCGA	LD	BRCA	TCGA-A7-A426-01A	RSRC2	chr12	123005932	-	VPS37B	chr12	123355608	-
Frame-shit	ENST00000354654	ENST00000267202		TCGA	LD	BRCA	TCGA-A7-A426-01A	RSRC2	chr12	123005932	-	VPS37B	chr12	123355608	-
intron-3CDS	ENST00000392442	ENST00000267202		TCGA	LD	BRCA	TCGA-A7-A426-01A	RSRC2	chr12	123005932	-	VPS37B	chr12	123355608	-
Frame-shit	ENST00000334232	ENST00000212355		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
Frame-shit	ENST00000334232	ENST00000370399		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
Frame-shit	ENST00000334232	ENST00000525962		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
5CDS-intron	ENST00000334232	ENST00000468996		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
Frame-shit	ENST00000359362	ENST00000212355		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
Frame-shit	ENST00000359362	ENST00000370399		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
Frame-shit	ENST00000359362	ENST00000525962		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
5CDS-intron	ENST00000359362	ENST00000468996		TCGA	LD	BRCA	TCGA-A7-A4SA-01A	EDARADD	chr1	236572574	+	TGFBR3	chr1	92263028	-
In-frame	ENST00000334126	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
5CDS-intron	ENST00000334126	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
intron-3CDS	ENST00000313663	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
intron-intron	ENST00000313663	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
5UTR-3CDS	ENST00000542452	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
5UTR-intron	ENST00000542452	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
intron-3CDS	ENST00000539061	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
intron-intron	ENST00000539061	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	C2CD3	chr11	73739332	-	TENM4	chr11	78383374	-
In-frame	ENST00000328257	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
5CDS-intron	ENST00000328257	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
In-frame	ENST00000398427	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
5CDS-intron	ENST00000398427	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
3UTR-3CDS	ENST00000542710	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
3UTR-intron	ENST00000542710	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
intron-3CDS	ENST00000543525	ENST00000278550		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
intron-intron	ENST00000543525	ENST00000533038		TCGA	LD	BRCA	TCGA-A7-A4SB-01A	PPME1	chr11	73915490	+	TENM4	chr11	78383374	-
intron-3UTR	ENST00000550385	ENST00000550067		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	CHPT1	chr12	102124414	+	SCYL2	chr12	100685281	+
intron-3UTR	ENST00000550385	ENST00000360820		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	CHPT1	chr12	102124414	+	SCYL2	chr12	100685281	+
intron-3UTR	ENST00000229266	ENST00000550067		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	CHPT1	chr12	102124414	+	SCYL2	chr12	100685281	+
intron-3UTR	ENST00000229266	ENST00000360820		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	CHPT1	chr12	102124414	+	SCYL2	chr12	100685281	+
intron-3UTR	ENST00000549872	ENST00000550067		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	CHPT1	chr12	102124414	+	SCYL2	chr12	100685281	+
intron-3UTR	ENST00000549872	ENST00000360820		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	CHPT1	chr12	102124414	+	SCYL2	chr12	100685281	+
5CDS-5UTR	ENST00000376279	ENST00000251127		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376279	ENST00000470333		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376279	ENST00000376196		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-intron	ENST00000376279	ENST00000376200		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376286	ENST00000251127		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376286	ENST00000470333		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376286	ENST00000376196		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-intron	ENST00000376286	ENST00000376200		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376285	ENST00000251127		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376285	ENST00000470333		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-5UTR	ENST00000376285	ENST00000376196		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
5CDS-intron	ENST00000376285	ENST00000376200		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
intron-5UTR	ENST00000485946	ENST00000251127		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
intron-5UTR	ENST00000485946	ENST00000470333		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
intron-5UTR	ENST00000485946	ENST00000376196		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
intron-intron	ENST00000485946	ENST00000376200		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	PCCA	chr13	100888132	+	NALCN	chr13	102051516	-
In-frame	ENST00000376387	ENST00000376355		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
In-frame	ENST00000376387	ENST00000444838		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
In-frame	ENST00000376387	ENST00000376360		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
In-frame	ENST00000376387	ENST00000376354		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
In-frame	ENST00000376387	ENST00000339105		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000463709	ENST00000376355		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000463709	ENST00000444838		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000463709	ENST00000376360		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000463709	ENST00000376354		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000463709	ENST00000339105		TCGA	LD	BRCA	TCGA-A7-A4SC-01A	TM9SF2	chr13	100201476	+	CLYBL	chr13	100425078	+
In-frame	ENST00000382518	ENST00000504830		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
In-frame	ENST00000382518	ENST00000352040		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5CDS-5UTR	ENST00000382518	ENST00000504582		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5CDS-intron	ENST00000382518	ENST00000515401		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
In-frame	ENST00000009180	ENST00000504830		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
In-frame	ENST00000009180	ENST00000352040		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5CDS-5UTR	ENST00000009180	ENST00000504582		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5CDS-intron	ENST00000009180	ENST00000515401		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5UTR-3CDS	ENST00000382515	ENST00000504830		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5UTR-3CDS	ENST00000382515	ENST00000352040		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5UTR-5UTR	ENST00000382515	ENST00000504582		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
5UTR-intron	ENST00000382515	ENST00000515401		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
3UTR-3CDS	ENST00000481267	ENST00000504830		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
3UTR-3CDS	ENST00000481267	ENST00000352040		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
3UTR-5UTR	ENST00000481267	ENST00000504582		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
3UTR-intron	ENST00000481267	ENST00000515401		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CD9	chr12	6334700	+	ADAMTS12	chr5	33684160	-
In-frame	ENST00000003100	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CYP51A1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
5CDS-5UTR	ENST00000003100	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CYP51A1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
Frame-shit	ENST00000450723	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CYP51A1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
5CDS-5UTR	ENST00000450723	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	CYP51A1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
Frame-shit	ENST00000321117	ENST00000260600		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
5CDS-intron	ENST00000321117	ENST00000405392		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
5CDS-intron	ENST00000321117	ENST00000450524		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
Frame-shit	ENST00000264709	ENST00000260600		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
5CDS-intron	ENST00000264709	ENST00000405392		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
5CDS-intron	ENST00000264709	ENST00000450524		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
Frame-shit	ENST00000406659	ENST00000260600		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
5CDS-intron	ENST00000406659	ENST00000405392		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
5CDS-intron	ENST00000406659	ENST00000450524		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-3CDS	ENST00000380746	ENST00000260600		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-intron	ENST00000380746	ENST00000405392		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-intron	ENST00000380746	ENST00000450524		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-3CDS	ENST00000402667	ENST00000260600		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-intron	ENST00000402667	ENST00000405392		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-intron	ENST00000402667	ENST00000450524		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-3CDS	ENST00000474887	ENST00000260600		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-intron	ENST00000474887	ENST00000405392		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-intron	ENST00000474887	ENST00000450524		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	DNMT3A	chr2	25523008	-	ADCY3	chr2	25065253	-
intron-5UTR	ENST00000607545	ENST00000389032		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	GUSBP1	chr5	21342085	+	STK38L	chr12	27450643	+
intron-intron	ENST00000607545	ENST00000539577		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	GUSBP1	chr5	21342085	+	STK38L	chr12	27450643	+
In-frame	ENST00000381340	ENST00000327087		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
Frame-shit	ENST00000381340	ENST00000546188		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
In-frame	ENST00000381340	ENST00000356134		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
5CDS-intron	ENST00000381340	ENST00000538154		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-3CDS	ENST00000545902	ENST00000327087		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-3CDS	ENST00000545902	ENST00000546188		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-3CDS	ENST00000545902	ENST00000356134		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-intron	ENST00000545902	ENST00000538154		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-3CDS	ENST00000242737	ENST00000327087		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-3CDS	ENST00000242737	ENST00000546188		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-3CDS	ENST00000242737	ENST00000356134		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
intron-intron	ENST00000242737	ENST00000538154		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	ITPR2	chr12	26580846	-	ANO2	chr12	5941769	-
5UTR-3CDS	ENST00000422722	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
5UTR-5UTR	ENST00000422722	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-3CDS	ENST00000343318	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-5UTR	ENST00000343318	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-3CDS	ENST00000458448	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-5UTR	ENST00000458448	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-3CDS	ENST00000430130	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-5UTR	ENST00000430130	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-3CDS	ENST00000454089	ENST00000005260		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
intron-5UTR	ENST00000454089	ENST00000462558		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	LRRD1	chr7	91752434	-	BAIAP2L1	chr7	97991744	-
Frame-shit	ENST00000380051	ENST00000330636		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
In-frame	ENST00000380051	ENST00000468929		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-3UTR	ENST00000380051	ENST00000464010		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000380051	ENST00000480566		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000380051	ENST00000500576		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000380051	ENST00000606472		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
Frame-shit	ENST00000319533	ENST00000330636		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
In-frame	ENST00000319533	ENST00000468929		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-3UTR	ENST00000319533	ENST00000464010		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000319533	ENST00000480566		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000319533	ENST00000500576		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000319533	ENST00000606472		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000464646	ENST00000330636		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000464646	ENST00000468929		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
intron-3UTR	ENST00000464646	ENST00000464010		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
intron-intron	ENST00000464646	ENST00000480566		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
intron-intron	ENST00000464646	ENST00000500576		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
intron-intron	ENST00000464646	ENST00000606472		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	RPP40	chr6	5004114	-	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000535225	ENST00000546474		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000327359		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000440513		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000392557		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000379937		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000547530		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000446501		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000379932		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000551787		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000549044		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000548421		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000546474		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000327359		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000440513		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000392557		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000379937		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000547530		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000446501		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000379932		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000551787		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000549044		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000548421		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000546474		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000327359		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000440513		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000392557		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000379937		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000547530		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000446501		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000379932		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000551787		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000549044		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000548421		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000546474		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000327359		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000440513		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000392557		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000379937		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000547530		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000446501		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000379932		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000551787		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000549044		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000548421		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000546474		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000327359		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000440513		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000392557		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000379937		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000547530		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000446501		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000379932		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000551787		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000549044		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000548421		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000546474		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000327359		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000440513		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000392557		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000379937		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000547530		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000446501		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000379932		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000551787		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000549044		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000548421		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	BRF1	chr14	69256385	-
5CDS-3UTR	ENST00000535225	ENST00000555997		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000535225	ENST00000439696		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000535225	ENST00000336440		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-intron	ENST00000535225	ENST00000408913		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000358657	ENST00000555997		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000358657	ENST00000439696		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000358657	ENST00000336440		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-intron	ENST00000358657	ENST00000408913		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000453097	ENST00000555997		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000453097	ENST00000439696		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000453097	ENST00000336440		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-intron	ENST00000453097	ENST00000408913		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000394856	ENST00000555997		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000394856	ENST00000439696		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000394856	ENST00000336440		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-intron	ENST00000394856	ENST00000408913		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000514353	ENST00000555997		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000514353	ENST00000439696		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-3UTR	ENST00000514353	ENST00000336440		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
5CDS-intron	ENST00000514353	ENST00000408913		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
intron-3UTR	ENST00000546663	ENST00000555997		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
intron-3UTR	ENST00000546663	ENST00000439696		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
intron-3UTR	ENST00000546663	ENST00000336440		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
intron-intron	ENST00000546663	ENST00000408913		TCGA	LD	BRCA	TCGA-A7-A4SD-01A	SLC4A8	chr12	51856240	+	ZFP36L1	chr14	69256385	-
intron-5UTR	ENST00000571102	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-intron	ENST00000571102	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-intron	ENST00000571102	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-5UTR	ENST00000431515	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000431515	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000431515	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-5UTR	ENST00000440027	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000440027	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000440027	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-5UTR	ENST00000262300	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000262300	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000262300	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-5UTR	ENST00000574385	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-intron	ENST00000574385	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-intron	ENST00000574385	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-5UTR	ENST00000574730	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000574730	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
5CDS-intron	ENST00000574730	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-5UTR	ENST00000573944	ENST00000396925		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-intron	ENST00000573944	ENST00000328796		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
intron-intron	ENST00000573944	ENST00000572154		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	PKMYT1	chr16	3029649	-	CLDN6	chr16	3068485	-
In-frame	ENST00000283351	ENST00000415083		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
In-frame	ENST00000283351	ENST00000542420		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
In-frame	ENST00000283351	ENST00000542743		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000283351	ENST00000539849		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000283351	ENST00000269137		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000283351	ENST00000545952		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000283351	ENST00000585241		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
Frame-shit	ENST00000582539	ENST00000415083		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
Frame-shit	ENST00000582539	ENST00000542420		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
Frame-shit	ENST00000582539	ENST00000542743		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582539	ENST00000539849		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582539	ENST00000269137		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582539	ENST00000545952		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582539	ENST00000585241		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
In-frame	ENST00000582513	ENST00000415083		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
In-frame	ENST00000582513	ENST00000542420		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
In-frame	ENST00000582513	ENST00000542743		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582513	ENST00000539849		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582513	ENST00000269137		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582513	ENST00000545952		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
5CDS-5UTR	ENST00000582513	ENST00000585241		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000584876	ENST00000415083		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000584876	ENST00000542420		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000584876	ENST00000542743		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000584876	ENST00000539849		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000584876	ENST00000269137		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000584876	ENST00000545952		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000584876	ENST00000585241		TCGA	LD	BRCA	TCGA-A7-A4SE-01A	TRAPPC8	chr18	29487423	-	SS18	chr18	23637706	-
Frame-shit	ENST00000589222	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000589222	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000407086	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000407086	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000390652	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000390652	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000408905	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000408905	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000588462	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000588462	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
intron-3CDS	ENST00000585744	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
intron-5UTR	ENST00000585744	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
intron-3CDS	ENST00000588874	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
intron-5UTR	ENST00000588874	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
intron-3CDS	ENST00000585812	ENST00000305783		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
intron-5UTR	ENST00000585812	ENST00000442346		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58767122	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000589222	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000589222	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000589222	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000589222	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000589222	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000589222	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000407086	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000407086	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000407086	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000407086	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000407086	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000407086	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000390652	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000390652	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000390652	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000390652	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000390652	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000390652	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000408905	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000408905	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000408905	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000408905	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000408905	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000408905	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000588462	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000588462	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000588462	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000588462	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000588462	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000588462	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585744	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585744	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585744	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585744	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585744	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-intron	ENST00000585744	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000588874	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000588874	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000588874	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000588874	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000588874	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-intron	ENST00000588874	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585812	ENST00000262291		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585812	ENST00000537567		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585812	ENST00000539763		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585812	ENST00000536180		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000585812	ENST00000545362		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
intron-intron	ENST00000585812	ENST00000588617		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCAS3	chr17	58885437	+	VMP1	chr17	57886157	+
5UTR-5UTR	ENST00000234739	ENST00000368764		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCL9	chr1	147013444	+	IVL	chr1	152882255	+
5UTR-5UTR	ENST00000234739	ENST00000392667		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCL9	chr1	147013444	+	IVL	chr1	152882255	+
intron-5UTR	ENST00000473292	ENST00000368764		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCL9	chr1	147013444	+	IVL	chr1	152882255	+
intron-5UTR	ENST00000473292	ENST00000392667		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCL9	chr1	147013444	+	IVL	chr1	152882255	+
5UTR-5UTR	ENST00000234739	ENST00000368765		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCL9	chr1	147013444	+	SMCP	chr1	152856879	+
intron-5UTR	ENST00000473292	ENST00000368765		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	BCL9	chr1	147013444	+	SMCP	chr1	152856879	+
In-frame	ENST00000229195	ENST00000519067		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000229195	ENST00000433583		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000229195	ENST00000517878		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000229195	ENST00000024061		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
5CDS-intron	ENST00000229195	ENST00000521804		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000418359	ENST00000519067		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000418359	ENST00000433583		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000418359	ENST00000517878		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000418359	ENST00000024061		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
5CDS-intron	ENST00000418359	ENST00000521804		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000548230	ENST00000519067		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000548230	ENST00000433583		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000548230	ENST00000517878		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000548230	ENST00000024061		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-intron	ENST00000548230	ENST00000521804		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000551483	ENST00000519067		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000551483	ENST00000433583		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000551483	ENST00000517878		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000551483	ENST00000024061		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
intron-intron	ENST00000551483	ENST00000521804		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	CNOT2	chr12	70713144	+	SLC45A4	chr8	142231864	-
In-frame	ENST00000269554	ENST00000394126		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
In-frame	ENST00000269554	ENST00000356271		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
In-frame	ENST00000269554	ENST00000394128		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
In-frame	ENST00000269554	ENST00000394127		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
In-frame	ENST00000269554	ENST00000501516		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5CDS-intron	ENST00000269554	ENST00000479829		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5UTR-3CDS	ENST00000311500	ENST00000394126		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5UTR-3CDS	ENST00000311500	ENST00000356271		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5UTR-3CDS	ENST00000311500	ENST00000394128		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5UTR-3CDS	ENST00000311500	ENST00000394127		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5UTR-3CDS	ENST00000311500	ENST00000501516		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
5UTR-intron	ENST00000311500	ENST00000479829		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PIP4K2B	chr17	36933940	-	MED24	chr17	38188343	-
Frame-shit	ENST00000202556	ENST00000389857		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
Frame-shit	ENST00000202556	ENST00000331194		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
5CDS-intron	ENST00000202556	ENST00000389856		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
5CDS-intron	ENST00000202556	ENST00000553403		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
5CDS-intron	ENST00000202556	ENST00000554165		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-3CDS	ENST00000423488	ENST00000389857		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-3CDS	ENST00000423488	ENST00000331194		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-intron	ENST00000423488	ENST00000389856		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-intron	ENST00000423488	ENST00000553403		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-intron	ENST00000423488	ENST00000554165		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-3CDS	ENST00000555391	ENST00000389857		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-3CDS	ENST00000555391	ENST00000331194		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-intron	ENST00000555391	ENST00000389856		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-intron	ENST00000555391	ENST00000553403		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
intron-intron	ENST00000555391	ENST00000554165		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	PPP1R13B	chr14	104219337	-	CCDC88C	chr14	91745650	-
5CDS-3UTR	ENST00000262291	ENST00000581865		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000262291	ENST00000312655		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000262291	ENST00000585166		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000537567	ENST00000581865		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000537567	ENST00000312655		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000537567	ENST00000585166		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3UTR	ENST00000539763	ENST00000581865		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3UTR	ENST00000539763	ENST00000312655		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3UTR	ENST00000539763	ENST00000585166		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000536180	ENST00000581865		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000536180	ENST00000312655		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000536180	ENST00000585166		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000545362	ENST00000581865		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000545362	ENST00000312655		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
5CDS-3UTR	ENST00000545362	ENST00000585166		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3UTR	ENST00000588617	ENST00000581865		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3UTR	ENST00000588617	ENST00000312655		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3UTR	ENST00000588617	ENST00000585166		TCGA	LD	BRCA	TCGA-A7-A4SF-01A	VMP1	chr17	57812834	+	YPEL2	chr17	57465688	+
intron-3CDS	ENST00000461377	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000461377	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000461377	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000461377	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-intron	ENST00000461377	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-5UTR	ENST00000461377	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3UTR	ENST00000461377	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000258781	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000258781	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000258781	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000258781	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-intron	ENST00000258781	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-5UTR	ENST00000258781	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-3UTR	ENST00000258781	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000544363	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000544363	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000544363	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000544363	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-intron	ENST00000544363	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-5UTR	ENST00000544363	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-3UTR	ENST00000544363	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000541586	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000541586	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000541586	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
In-frame	ENST00000541586	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-intron	ENST00000541586	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-5UTR	ENST00000541586	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
5CDS-3UTR	ENST00000541586	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000475551	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000475551	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000475551	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000475551	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-intron	ENST00000475551	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-5UTR	ENST00000475551	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3UTR	ENST00000475551	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000381112	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000381112	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000381112	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000381112	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-intron	ENST00000381112	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-5UTR	ENST00000381112	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3UTR	ENST00000381112	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000474617	ENST00000545074		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000474617	ENST00000540249		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000474617	ENST00000379806		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3CDS	ENST00000474617	ENST00000422285		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-intron	ENST00000474617	ENST00000379805		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-5UTR	ENST00000474617	ENST00000379804		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
intron-3UTR	ENST00000474617	ENST00000478795		TCGA	LD	BRCA	TCGA-A7-A56D-01A	CCM2	chr7	45039962	+	PDHA1	chrX	19375770	+
Frame-shit	ENST00000284116	ENST00000543872		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000284116	ENST00000578922		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000284116	ENST00000300917		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000284116	ENST00000580498		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
Frame-shit	ENST00000581140	ENST00000543872		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581140	ENST00000578922		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581140	ENST00000300917		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581140	ENST00000580498		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
Frame-shit	ENST00000581276	ENST00000543872		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581276	ENST00000578922		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581276	ENST00000300917		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
5CDS-intron	ENST00000581276	ENST00000580498		TCGA	LD	BRCA	TCGA-A7-A56D-01A	GDPD1	chr17	57298112	+	SMG8	chr17	57292166	+
3UTR-3CDS	ENST00000253814	ENST00000296597		TCGA	LD	BRCA	TCGA-A7-A56D-01A	NDFIP1	chr5	141524241	+	NDUFAF2	chr5	60448531	+
3UTR-3UTR	ENST00000253814	ENST00000511107		TCGA	LD	BRCA	TCGA-A7-A56D-01A	NDFIP1	chr5	141524241	+	NDUFAF2	chr5	60448531	+
3UTR-3UTR	ENST00000253814	ENST00000512623		TCGA	LD	BRCA	TCGA-A7-A56D-01A	NDFIP1	chr5	141524241	+	NDUFAF2	chr5	60448531	+
intron-3CDS	ENST00000509436	ENST00000296597		TCGA	LD	BRCA	TCGA-A7-A56D-01A	NDFIP1	chr5	141524241	+	NDUFAF2	chr5	60448531	+
intron-3UTR	ENST00000509436	ENST00000511107		TCGA	LD	BRCA	TCGA-A7-A56D-01A	NDFIP1	chr5	141524241	+	NDUFAF2	chr5	60448531	+
intron-3UTR	ENST00000509436	ENST00000512623		TCGA	LD	BRCA	TCGA-A7-A56D-01A	NDFIP1	chr5	141524241	+	NDUFAF2	chr5	60448531	+
5UTR-3CDS	ENST00000221249	ENST00000270517		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-3CDS	ENST00000221249	ENST00000588998		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-3CDS	ENST00000221249	ENST00000252440		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-3CDS	ENST00000221249	ENST00000417981		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-3CDS	ENST00000221249	ENST00000591104		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-3CDS	ENST00000221249	ENST00000592312		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-5UTR	ENST00000221249	ENST00000591352		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000545201	ENST00000270517		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000545201	ENST00000588998		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000545201	ENST00000252440		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000545201	ENST00000417981		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000545201	ENST00000591104		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000545201	ENST00000592312		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-5UTR	ENST00000545201	ENST00000591352		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000414982	ENST00000270517		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000414982	ENST00000588998		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000414982	ENST00000252440		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000414982	ENST00000417981		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000414982	ENST00000591104		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000414982	ENST00000592312		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-5UTR	ENST00000414982	ENST00000591352		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000450331	ENST00000270517		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000450331	ENST00000588998		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000450331	ENST00000252440		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000450331	ENST00000417981		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000450331	ENST00000591104		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000450331	ENST00000592312		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-5UTR	ENST00000450331	ENST00000591352		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000600737	ENST00000270517		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000600737	ENST00000588998		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000600737	ENST00000252440		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000600737	ENST00000417981		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000600737	ENST00000591104		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000600737	ENST00000592312		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-5UTR	ENST00000600737	ENST00000591352		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000594864	ENST00000270517		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000594864	ENST00000588998		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000594864	ENST00000252440		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000594864	ENST00000417981		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000594864	ENST00000591104		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-3CDS	ENST00000594864	ENST00000592312		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
intron-5UTR	ENST00000594864	ENST00000591352		TCGA	LD	BRCA	TCGA-A7-A56D-01A	PNPLA6	chr19	7599125	+	ECSIT	chr19	11618863	-
5UTR-3CDS	ENST00000257215	ENST00000263681		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	DAGLA	chr11	61447976	+	POLD3	chr11	74340262	+
5UTR-3CDS	ENST00000257215	ENST00000527458		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	DAGLA	chr11	61447976	+	POLD3	chr11	74340262	+
5UTR-3CDS	ENST00000257215	ENST00000532497		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	DAGLA	chr11	61447976	+	POLD3	chr11	74340262	+
5UTR-intron	ENST00000257215	ENST00000532784		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	DAGLA	chr11	61447976	+	POLD3	chr11	74340262	+
intron-3CDS	ENST00000372259	ENST00000371873		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
intron-intron	ENST00000372259	ENST00000450808		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
intron-intron	ENST00000372259	ENST00000471289		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
In-frame	ENST00000372257	ENST00000371873		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000372257	ENST00000450808		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000372257	ENST00000471289		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000537474	ENST00000371873		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
intron-intron	ENST00000537474	ENST00000450808		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
intron-intron	ENST00000537474	ENST00000471289		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
5UTR-3CDS	ENST00000495828	ENST00000371873		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
5UTR-intron	ENST00000495828	ENST00000450808		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
5UTR-intron	ENST00000495828	ENST00000471289		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ERI3	chr1	44820564	-	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000290795	ENST00000425117		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-3CDS	ENST00000290795	ENST00000394422		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-5UTR	ENST00000290795	ENST00000371051		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-intron	ENST00000290795	ENST00000371042		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-intron	ENST00000290795	ENST00000498179		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
5UTR-3CDS	ENST00000355105	ENST00000425117		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
5UTR-3CDS	ENST00000355105	ENST00000394422		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
5UTR-5UTR	ENST00000355105	ENST00000371051		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
5UTR-intron	ENST00000355105	ENST00000371042		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
5UTR-intron	ENST00000355105	ENST00000498179		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-3CDS	ENST00000479235	ENST00000425117		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-3CDS	ENST00000479235	ENST00000394422		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-5UTR	ENST00000479235	ENST00000371051		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-intron	ENST00000479235	ENST00000371042		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-intron	ENST00000479235	ENST00000498179		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	GPBP1L1	chr1	46151248	-	UTP14A	chrX	129041343	+
intron-3CDS	ENST00000323523	ENST00000421999		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
intron-intron	ENST00000323523	ENST00000496116		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
intron-intron	ENST00000323523	ENST00000489081		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
In-frame	ENST00000403410	ENST00000421999		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
5CDS-intron	ENST00000403410	ENST00000496116		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
5CDS-intron	ENST00000403410	ENST00000489081		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
3UTR-3CDS	ENST00000462884	ENST00000421999		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
3UTR-intron	ENST00000462884	ENST00000496116		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
3UTR-intron	ENST00000462884	ENST00000489081		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99879274	+
In-frame	ENST00000606738	ENST00000316005		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
In-frame	ENST00000606738	ENST00000370521		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000606738	ENST00000370505		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000606738	ENST00000370513		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000606738	ENST00000544045		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000606738	ENST00000495119		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5UTR-3CDS	ENST00000435576	ENST00000316005		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5UTR-3CDS	ENST00000435576	ENST00000370521		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5UTR-intron	ENST00000435576	ENST00000370505		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5UTR-intron	ENST00000435576	ENST00000370513		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5UTR-intron	ENST00000435576	ENST00000544045		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
5UTR-intron	ENST00000435576	ENST00000495119		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TRABD2B	chr1	48459706	-	PKN2	chr1	89206671	+
3UTR-3CDS	ENST00000553221	ENST00000552285		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000553221	ENST00000315970		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000553221	ENST00000439210		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000553221	ENST00000389146		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000553221	ENST00000413095		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000553221	ENST00000551035		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000553221	ENST00000435406		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000553221	ENST00000257966		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000553221	ENST00000389142		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000552285		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000315970		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000439210		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000389146		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000413095		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000551035		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000435406		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000257966		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000389142		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547992	ENST00000552285		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547992	ENST00000315970		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547992	ENST00000439210		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547992	ENST00000389146		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547992	ENST00000413095		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547992	ENST00000551035		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547992	ENST00000435406		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547992	ENST00000257966		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547992	ENST00000389142		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000552285		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000315970		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000439210		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000389146		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000413095		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000551035		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000435406		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000257966		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000389142		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	TSPAN31	chr12	58140039	+	OS9	chr12	58109543	+
5CDS-5UTR	ENST00000431662	ENST00000476166		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ZNF487	chr10	43932383	+	FXYD4	chr10	43868175	+
5CDS-3UTR	ENST00000431662	ENST00000480834		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ZNF487	chr10	43932383	+	FXYD4	chr10	43868175	+
intron-5UTR	ENST00000437590	ENST00000476166		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ZNF487	chr10	43932383	+	FXYD4	chr10	43868175	+
intron-3UTR	ENST00000437590	ENST00000480834		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ZNF487	chr10	43932383	+	FXYD4	chr10	43868175	+
intron-5UTR	ENST00000596267	ENST00000476166		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ZNF487	chr10	43932383	+	FXYD4	chr10	43868175	+
intron-3UTR	ENST00000596267	ENST00000480834		TCGA	LD	BRCA	TCGA-A7-A5ZV-01A	ZNF487	chr10	43932383	+	FXYD4	chr10	43868175	+
5CDS-intron	ENST00000298992	ENST00000395833		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
5CDS-5UTR	ENST00000298992	ENST00000257818		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
5CDS-intron	ENST00000298992	ENST00000493667		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
5CDS-intron	ENST00000435224	ENST00000395833		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
5CDS-5UTR	ENST00000435224	ENST00000257818		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
5CDS-intron	ENST00000435224	ENST00000493667		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
intron-intron	ENST00000530814	ENST00000395833		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
intron-5UTR	ENST00000530814	ENST00000257818		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
intron-intron	ENST00000530814	ENST00000493667		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ABTB2	chr11	34378248	-	LMO2	chr11	33903433	-
In-frame	ENST00000371108	ENST00000371076		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ALG6	chr1	63836730	+	UBE2U	chr1	64707335	+
5CDS-3UTR	ENST00000371108	ENST00000464349		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ALG6	chr1	63836730	+	UBE2U	chr1	64707335	+
In-frame	ENST00000263440	ENST00000371076		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ALG6	chr1	63836730	+	UBE2U	chr1	64707335	+
5CDS-3UTR	ENST00000263440	ENST00000464349		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ALG6	chr1	63836730	+	UBE2U	chr1	64707335	+
intron-3CDS	ENST00000494765	ENST00000371076		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ALG6	chr1	63836730	+	UBE2U	chr1	64707335	+
intron-3UTR	ENST00000494765	ENST00000464349		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ALG6	chr1	63836730	+	UBE2U	chr1	64707335	+
In-frame	ENST00000264245	ENST00000494664		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARHGAP31	chr3	119102073	+	TIMMDC1	chr3	119232488	+
5CDS-intron	ENST00000264245	ENST00000493694		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARHGAP31	chr3	119102073	+	TIMMDC1	chr3	119232488	+
5CDS-intron	ENST00000432884	ENST00000493485		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-3UTR	ENST00000432884	ENST00000494186		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000432884	ENST00000331410		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000432884	ENST00000483089		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000432884	ENST00000448667		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000432884	ENST00000379724		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000262942	ENST00000493485		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-3UTR	ENST00000262942	ENST00000494186		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000262942	ENST00000331410		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000262942	ENST00000483089		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000262942	ENST00000448667		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5CDS-intron	ENST00000262942	ENST00000379724		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
intron-intron	ENST00000471960	ENST00000493485		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
intron-3UTR	ENST00000471960	ENST00000494186		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
intron-intron	ENST00000471960	ENST00000331410		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
intron-intron	ENST00000471960	ENST00000483089		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
intron-intron	ENST00000471960	ENST00000448667		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
intron-intron	ENST00000471960	ENST00000379724		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	ARPC1A	chr7	98942138	+	ZNF789	chr7	99098346	+
5UTR-3CDS	ENST00000572681	ENST00000598742		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
5UTR-5UTR	ENST00000572681	ENST00000221975		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
5UTR-5UTR	ENST00000572681	ENST00000593863		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-3CDS	ENST00000575839	ENST00000598742		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000575839	ENST00000221975		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000575839	ENST00000593863		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-3CDS	ENST00000160740	ENST00000598742		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000160740	ENST00000221975		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000160740	ENST00000593863		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-3CDS	ENST00000575354	ENST00000598742		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000575354	ENST00000221975		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000575354	ENST00000593863		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CIC	chr19	42772746	+	RPS19	chr19	42373101	+
5UTR-intron	ENST00000367306	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000367306	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000367306	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000367306	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000367306	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000340006	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000340006	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000340006	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000340006	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000340006	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000531916	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000531916	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000531916	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000531916	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000531916	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000532460	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000532460	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000532460	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000532460	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000532460	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000533432	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000533432	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000533432	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000533432	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000533432	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000526723	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000526723	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000526723	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000526723	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000526723	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000458271	ENST00000509081		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000458271	ENST00000264400		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000458271	ENST00000335927		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000458271	ENST00000436139		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000458271	ENST00000514889		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	CSRP1	chr1	201476198	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000193029	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000193029	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000193029	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5UTR-5UTR	ENST00000193029	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000522874	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000522874	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000522874	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000522874	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000361847	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000361847	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000361847	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000361847	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000524214	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000524214	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000524214	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000524214	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000561150	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000561150	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000561150	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000561150	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000517966	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000517966	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000517966	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000517966	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000523231	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000523231	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000523231	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000523231	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000524370	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000524370	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000524370	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000524370	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000522867	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000522867	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000522867	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000522867	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000520266	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000520266	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000520266	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000520266	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000519058	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000519058	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000519058	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000519058	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000522534	ENST00000216281		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000522534	ENST00000334701		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000522534	ENST00000441629		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000522534	ENST00000558600		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	MOK	chr14	102729883	-	HSP90AA1	chr14	102568422	-
5UTR-3CDS	ENST00000282516	ENST00000264451		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	NIPBL	chr5	36877280	+	SLC30A9	chr4	42065003	+
5UTR-3CDS	ENST00000448238	ENST00000264451		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	NIPBL	chr5	36877280	+	SLC30A9	chr4	42065003	+
intron-3CDS	ENST00000504430	ENST00000264451		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	NIPBL	chr5	36877280	+	SLC30A9	chr4	42065003	+
5UTR-5UTR	ENST00000264555	ENST00000397397		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000397411		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000264555	ENST00000397396		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000397408		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000397406		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000409543		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000264555	ENST00000525201		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000397404		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000346501		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000264555	ENST00000409531		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000397397		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000397411		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000413872	ENST00000397396		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000397408		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000397406		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000409543		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000413872	ENST00000525201		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000397404		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000346501		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000413872	ENST00000409531		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000397397		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000397411		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000533464	ENST00000397396		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000397408		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000397406		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000409543		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000533464	ENST00000525201		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000397404		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000346501		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000533464	ENST00000409531		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000397397		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000397411		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000416188	ENST00000397396		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000397408		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000397406		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000409543		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-intron	ENST00000416188	ENST00000525201		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000397404		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000346501		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
5UTR-5UTR	ENST00000416188	ENST00000409531		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	PHRF1	chr11	576592	+	TSPAN4	chr11	850288	+
intron-3CDS	ENST00000514361	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000514361	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000503028	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000503028	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000310092	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000310092	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000396053	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000396053	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000408993	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000408993	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000578778	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000578778	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000483858	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000483858	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000398692	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000398692	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000506523	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000506523	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000530235	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000530235	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000532968	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5UTR-3CDS	ENST00000532968	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000409406	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000409406	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000515838	ENST00000502692		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
intron-3CDS	ENST00000515838	ENST00000513398		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	RBM4	chr11	66406223	+	ACTN3	chr11	66324604	+
5CDS-5UTR	ENST00000290079	ENST00000536468		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
5CDS-5UTR	ENST00000290079	ENST00000247668		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
5CDS-5UTR	ENST00000290079	ENST00000359662		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
5CDS-intron	ENST00000290079	ENST00000482854		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
3UTR-5UTR	ENST00000465017	ENST00000536468		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
3UTR-5UTR	ENST00000465017	ENST00000247668		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
3UTR-5UTR	ENST00000465017	ENST00000359662		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
3UTR-intron	ENST00000465017	ENST00000482854		TCGA	LD	BRCA	TCGA-A7-A6VV-01A	TMEM141	chr9	139686810	+	TRAF2	chr9	139793165	+
Frame-shit	ENST00000449352	ENST00000377452		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000449352	ENST00000494921		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000529360	ENST00000377452		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
intron-intron	ENST00000529360	ENST00000494921		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000265978	ENST00000377452		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000265978	ENST00000494921		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000524416	ENST00000377452		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000524416	ENST00000494921		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	FAM160A2	chr11	6240201	-	DTD1	chr20	18724744	+
5CDS-5UTR	ENST00000367121	ENST00000607778		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	SYNJ2	chr6	158438322	+	GTF2H5	chr6	158591502	+
5CDS-5UTR	ENST00000367122	ENST00000607778		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	SYNJ2	chr6	158438322	+	GTF2H5	chr6	158591502	+
5CDS-5UTR	ENST00000355585	ENST00000607778		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	SYNJ2	chr6	158438322	+	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000449859	ENST00000607778		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	SYNJ2	chr6	158438322	+	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000367112	ENST00000607778		TCGA	LD	BRCA	TCGA-A7-A6VW-01A	SYNJ2	chr6	158438322	+	GTF2H5	chr6	158591502	+
5CDS-5UTR	ENST00000368321	ENST00000543824		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000368321	ENST00000433847		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368321	ENST00000433083		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368321	ENST00000544916		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368321	ENST00000536844		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368320	ENST00000543824		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000368320	ENST00000433847		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368320	ENST00000433083		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368320	ENST00000544916		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368320	ENST00000536844		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368319	ENST00000543824		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000368319	ENST00000433847		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368319	ENST00000433083		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368319	ENST00000544916		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000368319	ENST00000536844		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5UTR-5UTR	ENST00000482337	ENST00000543824		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5UTR-3UTR	ENST00000482337	ENST00000433847		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5UTR-5UTR	ENST00000482337	ENST00000433083		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5UTR-5UTR	ENST00000482337	ENST00000544916		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
5UTR-5UTR	ENST00000482337	ENST00000536844		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	KIAA0907	chr1	155903424	-	PHC1	chr12	9070226	+
intron-3CDS	ENST00000409402	ENST00000377833		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-intron	ENST00000409402	ENST00000377823		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-3CDS	ENST00000410092	ENST00000377833		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-intron	ENST00000410092	ENST00000377823		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-3CDS	ENST00000309836	ENST00000377833		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-intron	ENST00000309836	ENST00000377823		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-3CDS	ENST00000453447	ENST00000377833		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-intron	ENST00000453447	ENST00000377823		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-3CDS	ENST00000383356	ENST00000377833		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-intron	ENST00000383356	ENST00000377823		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-3CDS	ENST00000464481	ENST00000377833		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
intron-intron	ENST00000464481	ENST00000377823		TCGA	LD	BRCA	TCGA-A7-A6VX-01A	SPIRE1	chr18	12449244	-	CUBN	chr10	16878381	-
5CDS-5UTR	ENST00000246190	ENST00000373345		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	NECAB3	chr20	32257181	-	ARHGAP40	chr20	37252002	+
5CDS-5UTR	ENST00000375238	ENST00000373345		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	NECAB3	chr20	32257181	-	ARHGAP40	chr20	37252002	+
intron-5UTR	ENST00000606525	ENST00000373345		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	NECAB3	chr20	32257181	-	ARHGAP40	chr20	37252002	+
intron-3CDS	ENST00000539317	ENST00000375592		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	SMAP2	chr1	40839895	+	FBXO42	chr1	16583254	-
intron-intron	ENST00000539317	ENST00000478089		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	SMAP2	chr1	40839895	+	FBXO42	chr1	16583254	-
intron-3CDS	ENST00000487871	ENST00000375592		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	SMAP2	chr1	40839895	+	FBXO42	chr1	16583254	-
intron-intron	ENST00000487871	ENST00000478089		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	SMAP2	chr1	40839895	+	FBXO42	chr1	16583254	-
In-frame	ENST00000272638	ENST00000409478		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
In-frame	ENST00000272638	ENST00000329971		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
In-frame	ENST00000272638	ENST00000264160		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
In-frame	ENST00000272638	ENST00000410054		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
In-frame	ENST00000272638	ENST00000409606		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
5CDS-intron	ENST00000272638	ENST00000443537		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
3UTR-3CDS	ENST00000490163	ENST00000409478		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
3UTR-3CDS	ENST00000490163	ENST00000329971		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
3UTR-3CDS	ENST00000490163	ENST00000264160		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
3UTR-3CDS	ENST00000490163	ENST00000410054		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
3UTR-3CDS	ENST00000490163	ENST00000409606		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
3UTR-intron	ENST00000490163	ENST00000443537		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	UBXN4	chr2	136533921	+	R3HDM1	chr2	136437743	+
5CDS-5UTR	ENST00000300896	ENST00000540274		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000300896	ENST00000377307		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000300896	ENST00000276826		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-intron	ENST00000300896	ENST00000528810		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000592339	ENST00000540274		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000592339	ENST00000377307		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000592339	ENST00000276826		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-intron	ENST00000592339	ENST00000528810		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000393003	ENST00000540274		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000393003	ENST00000377307		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000393003	ENST00000276826		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
5CDS-intron	ENST00000393003	ENST00000528810		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000586881	ENST00000540274		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000586881	ENST00000377307		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000586881	ENST00000276826		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-intron	ENST00000586881	ENST00000528810		TCGA	LD	BRCA	TCGA-A7-A6VY-01A	USP32	chr17	58422842	-	ARHGAP39	chr8	145831080	-
intron-3UTR	ENST00000227524	ENST00000311481		TCGA	LD	BRCA	TCGA-A8-A06N-01A	PRPF19	chr11	60658575	-	RAB1B	chr11	66043975	+
intron-3UTR	ENST00000227524	ENST00000527397		TCGA	LD	BRCA	TCGA-A8-A06N-01A	PRPF19	chr11	60658575	-	RAB1B	chr11	66043975	+
Frame-shit	ENST00000301761	ENST00000311320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000301761	ENST00000424433		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000301761	ENST00000530056		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000301761	ENST00000524804		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000542074	ENST00000311320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000542074	ENST00000424433		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000542074	ENST00000530056		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000542074	ENST00000524804		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000537782	ENST00000311320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000537782	ENST00000424433		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000537782	ENST00000530056		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000537782	ENST00000524804		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000543265	ENST00000311320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000543265	ENST00000424433		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000543265	ENST00000530056		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000543265	ENST00000524804		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000534878	ENST00000311320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000534878	ENST00000424433		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
Frame-shit	ENST00000534878	ENST00000530056		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
5CDS-intron	ENST00000534878	ENST00000524804		TCGA	LD	BRCA	TCGA-A8-A06N-01A	SDHAF2	chr11	61197654	+	RIN1	chr11	66101129	-
5CDS-5UTR	ENST00000374586	ENST00000361671		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TMEM245	chr9	111795587	-	NAA35	chr9	88557070	+
5CDS-5UTR	ENST00000374586	ENST00000376040		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TMEM245	chr9	111795587	-	NAA35	chr9	88557070	+
5UTR-3CDS	ENST00000496728	ENST00000393316		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5UTR-5UTR	ENST00000496728	ENST00000488450		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5UTR-5UTR	ENST00000496728	ENST00000393320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5UTR-5UTR	ENST00000496728	ENST00000471267		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
Frame-shit	ENST00000300181	ENST00000393316		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5CDS-5UTR	ENST00000300181	ENST00000488450		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5CDS-5UTR	ENST00000300181	ENST00000393320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5CDS-5UTR	ENST00000300181	ENST00000471267		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
Frame-shit	ENST00000393991	ENST00000393316		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5CDS-5UTR	ENST00000393991	ENST00000488450		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5CDS-5UTR	ENST00000393991	ENST00000393320		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
5CDS-5UTR	ENST00000393991	ENST00000471267		TCGA	LD	BRCA	TCGA-A8-A06N-01A	TSC22D4	chr7	100071897	-	BCL2L15	chr1	114423762	-
Frame-shit	ENST00000340134	ENST00000328194		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
Frame-shit	ENST00000340134	ENST00000530044		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
5CDS-intron	ENST00000340134	ENST00000527700		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
5CDS-intron	ENST00000340134	ENST00000526523		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
intron-3CDS	ENST00000482459	ENST00000328194		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
intron-3CDS	ENST00000482459	ENST00000530044		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
intron-intron	ENST00000482459	ENST00000527700		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
intron-intron	ENST00000482459	ENST00000526523		TCGA	LD	BRCA	TCGA-A8-A06O-01A	IFITM10	chr11	1768897	-	DENND5A	chr11	9215228	-
In-frame	ENST00000310614	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A06O-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-5UTR	ENST00000253925	ENST00000357461		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PPFIA1	chr11	70202360	+	TMEM229B	chr14	67953889	-
5CDS-5UTR	ENST00000253925	ENST00000557006		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PPFIA1	chr11	70202360	+	TMEM229B	chr14	67953889	-
5CDS-5UTR	ENST00000389547	ENST00000357461		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PPFIA1	chr11	70202360	+	TMEM229B	chr14	67953889	-
5CDS-5UTR	ENST00000389547	ENST00000557006		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PPFIA1	chr11	70202360	+	TMEM229B	chr14	67953889	-
intron-5UTR	ENST00000530548	ENST00000357461		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PPFIA1	chr11	70202360	+	TMEM229B	chr14	67953889	-
intron-5UTR	ENST00000530548	ENST00000557006		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PPFIA1	chr11	70202360	+	TMEM229B	chr14	67953889	-
Frame-shit	ENST00000607273	ENST00000451025		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PRIM2	chr6	57246966	+	MAD2L1BP	chr6	43607758	+
Frame-shit	ENST00000607273	ENST00000372171		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PRIM2	chr6	57246966	+	MAD2L1BP	chr6	43607758	+
5CDS-intron	ENST00000607273	ENST00000508232		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PRIM2	chr6	57246966	+	MAD2L1BP	chr6	43607758	+
3UTR-3CDS	ENST00000389488	ENST00000451025		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PRIM2	chr6	57246966	+	MAD2L1BP	chr6	43607758	+
3UTR-3CDS	ENST00000389488	ENST00000372171		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PRIM2	chr6	57246966	+	MAD2L1BP	chr6	43607758	+
3UTR-intron	ENST00000389488	ENST00000508232		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PRIM2	chr6	57246966	+	MAD2L1BP	chr6	43607758	+
Frame-shit	ENST00000338086	ENST00000304031		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000338086	ENST00000402541		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000338086	ENST00000406618		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000319801	ENST00000304031		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000319801	ENST00000402541		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000319801	ENST00000406618		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000361078	ENST00000304031		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000361078	ENST00000402541		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000361078	ENST00000406618		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
intron-3CDS	ENST00000536417	ENST00000304031		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
intron-3CDS	ENST00000536417	ENST00000402541		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
intron-3CDS	ENST00000536417	ENST00000406618		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000403432	ENST00000304031		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000403432	ENST00000402541		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
Frame-shit	ENST00000403432	ENST00000406618		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
5UTR-3CDS	ENST00000420234	ENST00000304031		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
5UTR-3CDS	ENST00000420234	ENST00000402541		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
5UTR-3CDS	ENST00000420234	ENST00000406618		TCGA	LD	BRCA	TCGA-A8-A06O-01A	PUM2	chr2	20518298	-	HS1BP3	chr2	20845265	-
intron-5UTR	ENST00000383777	ENST00000503581		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000383777	ENST00000370621		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-intron	ENST00000383777	ENST00000370616		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000383777	ENST00000393380		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000383777	ENST00000342421		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000383777	ENST00000370618		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-intron	ENST00000383777	ENST00000486069		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000399451	ENST00000503581		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000399451	ENST00000370621		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-intron	ENST00000399451	ENST00000370616		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000399451	ENST00000393380		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000399451	ENST00000342421		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000399451	ENST00000370618		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-intron	ENST00000399451	ENST00000486069		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000497037	ENST00000503581		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000497037	ENST00000370621		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-intron	ENST00000497037	ENST00000370616		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000497037	ENST00000393380		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000497037	ENST00000342421		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000497037	ENST00000370618		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
intron-intron	ENST00000497037	ENST00000486069		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	ANKRD28	chr3	15855747	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000409074	ENST00000311637		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000409074	ENST00000338821		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000409074	ENST00000402822		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000409074	ENST00000477492		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000556253	ENST00000311637		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000556253	ENST00000338821		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000556253	ENST00000402822		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000556253	ENST00000477492		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000247618	ENST00000311637		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000247618	ENST00000338821		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000247618	ENST00000402822		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
5CDS-intron	ENST00000247618	ENST00000477492		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
3UTR-intron	ENST00000477116	ENST00000311637		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
3UTR-intron	ENST00000477116	ENST00000338821		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
3UTR-intron	ENST00000477116	ENST00000402822		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
3UTR-intron	ENST00000477116	ENST00000477492		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	APOPT1	chr14	104040507	+	ATP9A	chr20	50314021	-
3UTR-3CDS	ENST00000593699	ENST00000372141		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
3UTR-3CDS	ENST00000593699	ENST00000404547		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
3UTR-3CDS	ENST00000593699	ENST00000372142		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
3UTR-3CDS	ENST00000593699	ENST00000404576		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
3UTR-3CDS	ENST00000593699	ENST00000556918		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
3UTR-3CDS	ENST00000593699	ENST00000537893		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
3UTR-3CDS	ENST00000593699	ENST00000545131		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000372141		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000404547		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000372142		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000404576		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000556918		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000537893		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000372499	ENST00000545131		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000372141		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000404547		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000372142		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000404576		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000556918		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000537893		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
In-frame	ENST00000496424	ENST00000545131		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	C10orf11	chr10	78084243	+	NRG3	chr10	84711225	+
5CDS-3UTR	ENST00000528737	ENST00000384702		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FAM111A	chr11	58920411	+	RNU6-246P	chr9	15544242	+
5CDS-3UTR	ENST00000420244	ENST00000384702		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FAM111A	chr11	58920411	+	RNU6-246P	chr9	15544242	+
intron-3UTR	ENST00000529985	ENST00000384702		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FAM111A	chr11	58920411	+	RNU6-246P	chr9	15544242	+
5CDS-3UTR	ENST00000361723	ENST00000384702		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FAM111A	chr11	58920411	+	RNU6-246P	chr9	15544242	+
5CDS-3UTR	ENST00000533703	ENST00000384702		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FAM111A	chr11	58920411	+	RNU6-246P	chr9	15544242	+
5CDS-3UTR	ENST00000531147	ENST00000384702		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FAM111A	chr11	58920411	+	RNU6-246P	chr9	15544242	+
5CDS-intron	ENST00000287647	ENST00000560326		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000287647	ENST00000216756		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000287647	ENST00000536961		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000287647	ENST00000541568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383807	ENST00000560326		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383807	ENST00000216756		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383807	ENST00000536961		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383807	ENST00000541568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383806	ENST00000560326		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383806	ENST00000216756		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383806	ENST00000536961		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000383806	ENST00000541568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000419585	ENST00000560326		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000419585	ENST00000216756		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000419585	ENST00000536961		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5CDS-intron	ENST00000419585	ENST00000541568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000431693	ENST00000560326		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000431693	ENST00000216756		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000431693	ENST00000536961		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000431693	ENST00000541568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000438741	ENST00000560326		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000438741	ENST00000216756		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000438741	ENST00000536961		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
intron-intron	ENST00000438741	ENST00000541568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	FANCD2	chr3	10088407	+	CINP	chr14	102822234	-
5UTR-3CDS	ENST00000431264	ENST00000506447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000431264	ENST00000325971		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000431264	ENST00000430049		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3UTR	ENST00000431264	ENST00000540847		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000424526	ENST00000506447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000424526	ENST00000325971		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000424526	ENST00000430049		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3UTR	ENST00000424526	ENST00000540847		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000400483	ENST00000506447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000400483	ENST00000325971		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000400483	ENST00000430049		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3UTR	ENST00000400483	ENST00000540847		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000269218	ENST00000506447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000269218	ENST00000325971		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3CDS	ENST00000269218	ENST00000430049		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
5UTR-3UTR	ENST00000269218	ENST00000540847		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3CDS	ENST00000580732	ENST00000506447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3CDS	ENST00000580732	ENST00000325971		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3CDS	ENST00000580732	ENST00000430049		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3UTR	ENST00000580732	ENST00000540847		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3CDS	ENST00000578368	ENST00000506447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3CDS	ENST00000578368	ENST00000325971		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3CDS	ENST00000578368	ENST00000430049		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
intron-3UTR	ENST00000578368	ENST00000540847		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	GREB1L	chr18	18822354	+	CEP192	chr18	13100304	+
Frame-shit	ENST00000170447	ENST00000256999		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
Frame-shit	ENST00000170447	ENST00000356696		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000170447	ENST00000343844		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000170447	ENST00000340334		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000170447	ENST00000533034		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-intron	ENST00000170447	ENST00000525629		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
Frame-shit	ENST00000411987	ENST00000256999		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
Frame-shit	ENST00000411987	ENST00000356696		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000411987	ENST00000343844		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000411987	ENST00000340334		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000411987	ENST00000533034		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-intron	ENST00000411987	ENST00000525629		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
Frame-shit	ENST00000448482	ENST00000256999		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
Frame-shit	ENST00000448482	ENST00000356696		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000448482	ENST00000343844		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000448482	ENST00000340334		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-5UTR	ENST00000448482	ENST00000533034		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
5CDS-intron	ENST00000448482	ENST00000525629		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	MKRN2	chr3	12598675	+	FOLH1	chr11	49227724	-
Frame-shit	ENST00000425241	ENST00000394919		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000425241	ENST00000342444		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000425241	ENST00000317168		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000425241	ENST00000545550		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000425241	ENST00000317126		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000425241	ENST00000394915		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000425241	ENST00000492502		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
Frame-shit	ENST00000323373	ENST00000394919		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000323373	ENST00000342444		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000323373	ENST00000317168		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000323373	ENST00000545550		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000323373	ENST00000317126		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000323373	ENST00000394915		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000323373	ENST00000492502		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
Frame-shit	ENST00000393102	ENST00000394919		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000393102	ENST00000342444		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000393102	ENST00000317168		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000393102	ENST00000545550		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000393102	ENST00000317126		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000393102	ENST00000394915		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000393102	ENST00000492502		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
Frame-shit	ENST00000406272	ENST00000394919		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000406272	ENST00000342444		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000406272	ENST00000317168		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000406272	ENST00000545550		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000406272	ENST00000317126		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000406272	ENST00000394915		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000406272	ENST00000492502		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-3CDS	ENST00000478572	ENST00000394919		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000478572	ENST00000342444		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000478572	ENST00000317168		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000478572	ENST00000545550		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000478572	ENST00000317126		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-intron	ENST00000478572	ENST00000394915		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
intron-intron	ENST00000478572	ENST00000492502		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	NR2C2	chr3	15055296	+	ASCC1	chr10	73857208	-
5CDS-5UTR	ENST00000373232	ENST00000549405		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000373232	ENST00000393205		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000373232	ENST00000332156		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000373232	ENST00000604798		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000373232	ENST00000552808		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000373232	ENST00000548651		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000373232	ENST00000552435		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-intron	ENST00000373232	ENST00000602941		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000549405		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000393205		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000332156		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000604798		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000552808		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000548651		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000608321	ENST00000552435		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
5CDS-intron	ENST00000608321	ENST00000602941		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000549405		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000393205		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000332156		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000604798		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000552808		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000548651		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000495346	ENST00000552435		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
intron-intron	ENST00000495346	ENST00000602941		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	PPA1	chr10	71977568	-	MGAT4C	chr12	86383330	-
In-frame	ENST00000396020	ENST00000579585		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000396020	ENST00000584573		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000396020	ENST00000361733		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000396020	ENST00000361357		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000396020	ENST00000577395		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000396020	ENST00000577784		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000245458	ENST00000579585		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000245458	ENST00000584573		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000245458	ENST00000361733		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000245458	ENST00000361357		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
In-frame	ENST00000245458	ENST00000577395		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000245458	ENST00000577784		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5UTR-3CDS	ENST00000557111	ENST00000579585		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5UTR-3CDS	ENST00000557111	ENST00000584573		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5UTR-3CDS	ENST00000557111	ENST00000361733		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5UTR-3CDS	ENST00000557111	ENST00000361357		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5UTR-3CDS	ENST00000557111	ENST00000577395		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5UTR-intron	ENST00000557111	ENST00000577784		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	RPS29	chr14	50052668	-	MAP3K3	chr17	61723394	+
5CDS-intron	ENST00000269033	ENST00000553817		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000269033	ENST00000396128		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000269033	ENST00000355081		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000540801	ENST00000553817		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000540801	ENST00000396128		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000540801	ENST00000355081		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
intron-intron	ENST00000324677	ENST00000553817		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
intron-intron	ENST00000324677	ENST00000396128		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
intron-intron	ENST00000324677	ENST00000355081		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000582084	ENST00000553817		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000582084	ENST00000396128		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000582084	ENST00000355081		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000590153	ENST00000553817		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000590153	ENST00000396128		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000590153	ENST00000355081		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000579954	ENST00000553817		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000579954	ENST00000396128		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
5CDS-intron	ENST00000579954	ENST00000355081		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SSH2	chr17	28256956	-	KLHL28	chr14	45415131	-
In-frame	ENST00000322652	ENST00000326219		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000322652	ENST00000352793		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000322652	ENST00000436235		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000322652	ENST00000398154		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000322652	ENST00000334568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000580398	ENST00000326219		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000580398	ENST00000352793		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000580398	ENST00000436235		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000580398	ENST00000398154		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000580398	ENST00000334568		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	SUZ12	chr17	30320352	+	TAC4	chr17	47921519	-
In-frame	ENST00000321196	ENST00000549396		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000321196	ENST00000550584		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000321196	ENST00000549325		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000545296		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000550359		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000407050		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000333447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000548586		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000443686		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000321196	ENST00000552948		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000321196	ENST00000541570		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000321196	ENST00000541017		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548305	ENST00000549396		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548305	ENST00000550584		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548305	ENST00000549325		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000545296		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000550359		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000407050		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000333447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000548586		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000443686		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000548305	ENST00000552948		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-intron	ENST00000548305	ENST00000541570		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
intron-intron	ENST00000548305	ENST00000541017		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000549919	ENST00000549396		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000549919	ENST00000550584		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000549919	ENST00000549325		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000545296		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000550359		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000407050		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000333447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000548586		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000443686		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000549919	ENST00000552948		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000549919	ENST00000541570		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000549919	ENST00000541017		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	TMTC2	chr12	83455610	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000310301	ENST00000341056		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000310301	ENST00000396045		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000310301	ENST00000310758		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000310301	ENST00000396040		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000310301	ENST00000442504		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000310301	ENST00000448602		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000310301	ENST00000479447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
Frame-shit	ENST00000395969	ENST00000341056		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000395969	ENST00000396045		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000395969	ENST00000310758		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000395969	ENST00000396040		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000395969	ENST00000442504		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000395969	ENST00000448602		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
5CDS-intron	ENST00000395969	ENST00000479447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-3CDS	ENST00000466017	ENST00000341056		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-intron	ENST00000466017	ENST00000396045		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-intron	ENST00000466017	ENST00000310758		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-intron	ENST00000466017	ENST00000396040		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-intron	ENST00000466017	ENST00000442504		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-intron	ENST00000466017	ENST00000448602		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
intron-intron	ENST00000466017	ENST00000479447		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	VPS41	chr7	38794302	-	ELMO1	chr7	37053040	-
In-frame	ENST00000285021	ENST00000262241		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	XPC	chr3	14209757	-	RCOR1	chr14	103177272	+
In-frame	ENST00000285021	ENST00000570597		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	XPC	chr3	14209757	-	RCOR1	chr14	103177272	+
In-frame	ENST00000449060	ENST00000262241		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	XPC	chr3	14209757	-	RCOR1	chr14	103177272	+
In-frame	ENST00000449060	ENST00000570597		TCGA	LD	BRCA	TCGA-A8-A06Q-01A	XPC	chr3	14209757	-	RCOR1	chr14	103177272	+
In-frame	ENST00000543086	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000543086	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-intron	ENST00000543086	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000546231	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000546231	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-intron	ENST00000546231	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000397203	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000397203	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-intron	ENST00000397203	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000360905	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000360905	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-intron	ENST00000360905	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000589028	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000589028	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-intron	ENST00000589028	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000355446	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
In-frame	ENST00000355446	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-intron	ENST00000355446	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
intron-3CDS	ENST00000536573	ENST00000367545		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
intron-3CDS	ENST00000536573	ENST00000367526		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
intron-intron	ENST00000536573	ENST00000480333		TCGA	LD	BRCA	TCGA-A8-A06R-01A	ERC1	chr12	1553916	+	UTRN	chr6	145051493	+
5CDS-3UTR	ENST00000237530	ENST00000462448		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPN2	chr20	35833304	+	STK17A	chr7	43635500	+
5CDS-3UTR	ENST00000237530	ENST00000319357		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPN2	chr20	35833304	+	STK17A	chr7	43635500	+
5CDS-3UTR	ENST00000373622	ENST00000462448		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPN2	chr20	35833304	+	STK17A	chr7	43635500	+
5CDS-3UTR	ENST00000373622	ENST00000319357		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPN2	chr20	35833304	+	STK17A	chr7	43635500	+
intron-3UTR	ENST00000470352	ENST00000462448		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPN2	chr20	35833304	+	STK17A	chr7	43635500	+
intron-3UTR	ENST00000470352	ENST00000319357		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPN2	chr20	35833304	+	STK17A	chr7	43635500	+
intron-3CDS	ENST00000265678	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000265678	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-intron	ENST00000265678	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
In-frame	ENST00000510118	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
In-frame	ENST00000510118	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
5CDS-intron	ENST00000510118	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
In-frame	ENST00000503859	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
In-frame	ENST00000503859	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
5CDS-intron	ENST00000503859	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000481261	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000481261	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-intron	ENST00000481261	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000405189	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000405189	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-intron	ENST00000405189	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000366863	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000366863	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-intron	ENST00000366863	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000509742	ENST00000366847		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-3CDS	ENST00000509742	ENST00000349556		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
intron-intron	ENST00000509742	ENST00000476078		TCGA	LD	BRCA	TCGA-A8-A06R-01A	RPS6KA2	chr6	167271688	-	FGFR1OP	chr6	167424301	+
5CDS-intron	ENST00000369162	ENST00000556478		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
5CDS-intron	ENST00000369162	ENST00000441560		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
5CDS-intron	ENST00000369162	ENST00000357032		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
5CDS-intron	ENST00000369162	ENST00000354525		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
5CDS-intron	ENST00000369162	ENST00000358385		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000522650	ENST00000556478		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000522650	ENST00000441560		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000522650	ENST00000357032		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000522650	ENST00000354525		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000522650	ENST00000358385		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000369143	ENST00000556478		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000369143	ENST00000441560		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000369143	ENST00000357032		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000369143	ENST00000354525		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
intron-intron	ENST00000369143	ENST00000358385		TCGA	LD	BRCA	TCGA-A8-A06T-01A	ASCC3	chr6	101053444	-	ATL1	chr14	51094749	+
Frame-shit	ENST00000406337	ENST00000520810		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000416505		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000519735		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000520835		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000379708		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000518983		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000522147		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000406337	ENST00000522785		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
In-frame	ENST00000265713	ENST00000520810		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000416505		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000519735		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000520835		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000379708		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000518983		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000522147		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000265713	ENST00000522785		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
In-frame	ENST00000396930	ENST00000520810		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000416505		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000519735		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000520835		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000379708		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000518983		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000522147		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000396930	ENST00000522785		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
In-frame	ENST00000485568	ENST00000520810		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000416505		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000519735		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000520835		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000379708		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000518983		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000522147		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5CDS-intron	ENST00000485568	ENST00000522785		TCGA	LD	BRCA	TCGA-A8-A06T-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42146152	+
5UTR-intron	ENST00000541284	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000541284	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-intron	ENST00000451834	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000451834	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-intron	ENST00000423368	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000423368	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-intron	ENST00000361528	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000361528	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-intron	ENST00000356162	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000356162	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-intron	ENST00000428680	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000428680	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-intron	ENST00000315544	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
5UTR-3UTR	ENST00000315544	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
intron-intron	ENST00000473470	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
intron-3UTR	ENST00000473470	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
intron-intron	ENST00000414802	ENST00000396073		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
intron-3UTR	ENST00000414802	ENST00000472903		TCGA	LD	BRCA	TCGA-A8-A06U-01A	CNOT4	chr7	135194637	-	ENAM	chr4	71547216	+
intron-3CDS	ENST00000396253	ENST00000324559		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-intron	ENST00000396253	ENST00000532043		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-3CDS	ENST00000349215	ENST00000324559		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-intron	ENST00000349215	ENST00000532043		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
5UTR-3CDS	ENST00000438420	ENST00000324559		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
5UTR-intron	ENST00000438420	ENST00000532043		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-3CDS	ENST00000537258	ENST00000324559		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-intron	ENST00000537258	ENST00000532043		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-3CDS	ENST00000352460	ENST00000324559		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-intron	ENST00000352460	ENST00000532043		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-3CDS	ENST00000531848	ENST00000324559		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
intron-intron	ENST00000531848	ENST00000532043		TCGA	LD	BRCA	TCGA-A8-A06U-01A	HPS5	chr11	18343680	-	ANO5	chr11	22225350	+
Frame-shit	ENST00000262189	ENST00000262187		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
5CDS-5UTR	ENST00000262189	ENST00000472642		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
5CDS-5UTR	ENST00000262189	ENST00000496004		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
Frame-shit	ENST00000355193	ENST00000262187		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
5CDS-5UTR	ENST00000355193	ENST00000472642		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
5CDS-5UTR	ENST00000355193	ENST00000496004		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-3CDS	ENST00000485655	ENST00000262187		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-5UTR	ENST00000485655	ENST00000472642		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-5UTR	ENST00000485655	ENST00000496004		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-3CDS	ENST00000485241	ENST00000262187		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-5UTR	ENST00000485241	ENST00000472642		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-5UTR	ENST00000485241	ENST00000496004		TCGA	LD	BRCA	TCGA-A8-A06U-01A	KMT2C	chr7	151882643	-	RHEB	chr7	151188100	-
intron-3CDS	ENST00000448637	ENST00000560609		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3CDS	ENST00000448637	ENST00000258884		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3CDS	ENST00000448637	ENST00000558464		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3UTR	ENST00000448637	ENST00000559506		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3CDS	ENST00000312675	ENST00000560609		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3CDS	ENST00000312675	ENST00000258884		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3CDS	ENST00000312675	ENST00000558464		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3UTR	ENST00000312675	ENST00000559506		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3CDS	ENST00000543006	ENST00000560609		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3CDS	ENST00000543006	ENST00000258884		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3CDS	ENST00000543006	ENST00000558464		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5UTR-3UTR	ENST00000543006	ENST00000559506		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3CDS	ENST00000471917	ENST00000560609		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3CDS	ENST00000471917	ENST00000258884		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3CDS	ENST00000471917	ENST00000558464		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
intron-3UTR	ENST00000471917	ENST00000559506		TCGA	LD	BRCA	TCGA-A8-A06U-01A	LPP	chr3	187943315	+	ABHD17C	chr15	81046492	+
5CDS-5UTR	ENST00000302503	ENST00000311485		TCGA	LD	BRCA	TCGA-A8-A06U-01A	MTCH2	chr11	47652107	-	RAG2	chr11	36615745	-
5CDS-intron	ENST00000302503	ENST00000528428		TCGA	LD	BRCA	TCGA-A8-A06U-01A	MTCH2	chr11	47652107	-	RAG2	chr11	36615745	-
5CDS-5UTR	ENST00000542981	ENST00000311485		TCGA	LD	BRCA	TCGA-A8-A06U-01A	MTCH2	chr11	47652107	-	RAG2	chr11	36615745	-
5CDS-intron	ENST00000542981	ENST00000528428		TCGA	LD	BRCA	TCGA-A8-A06U-01A	MTCH2	chr11	47652107	-	RAG2	chr11	36615745	-
intron-5UTR	ENST00000534074	ENST00000311485		TCGA	LD	BRCA	TCGA-A8-A06U-01A	MTCH2	chr11	47652107	-	RAG2	chr11	36615745	-
intron-intron	ENST00000534074	ENST00000528428		TCGA	LD	BRCA	TCGA-A8-A06U-01A	MTCH2	chr11	47652107	-	RAG2	chr11	36615745	-
Frame-shit	ENST00000360540	ENST00000526785		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
In-frame	ENST00000360540	ENST00000265651		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-3UTR	ENST00000360540	ENST00000530401		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-3UTR	ENST00000360540	ENST00000531080		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-3UTR	ENST00000360540	ENST00000532057		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-intron	ENST00000360540	ENST00000534136		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-intron	ENST00000360540	ENST00000448981		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-intron	ENST00000360540	ENST00000533103		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3CDS	ENST00000544451	ENST00000526785		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3CDS	ENST00000544451	ENST00000265651		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3UTR	ENST00000544451	ENST00000530401		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3UTR	ENST00000544451	ENST00000531080		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3UTR	ENST00000544451	ENST00000532057		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-intron	ENST00000544451	ENST00000534136		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-intron	ENST00000544451	ENST00000448981		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-intron	ENST00000544451	ENST00000533103		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-3CDS	ENST00000519559	ENST00000526785		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-3CDS	ENST00000519559	ENST00000265651		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-3UTR	ENST00000519559	ENST00000530401		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-3UTR	ENST00000519559	ENST00000531080		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-3UTR	ENST00000519559	ENST00000532057		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-intron	ENST00000519559	ENST00000534136		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-intron	ENST00000519559	ENST00000448981		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5UTR-intron	ENST00000519559	ENST00000533103		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
In-frame	ENST00000522514	ENST00000526785		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
Frame-shit	ENST00000522514	ENST00000265651		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-3UTR	ENST00000522514	ENST00000530401		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-3UTR	ENST00000522514	ENST00000531080		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-3UTR	ENST00000522514	ENST00000532057		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-intron	ENST00000522514	ENST00000534136		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-intron	ENST00000522514	ENST00000448981		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
5CDS-intron	ENST00000522514	ENST00000533103		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3CDS	ENST00000521344	ENST00000526785		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3CDS	ENST00000521344	ENST00000265651		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3UTR	ENST00000521344	ENST00000530401		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3UTR	ENST00000521344	ENST00000531080		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3UTR	ENST00000521344	ENST00000532057		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-intron	ENST00000521344	ENST00000534136		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-intron	ENST00000521344	ENST00000448981		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-intron	ENST00000521344	ENST00000533103		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PCMTD1	chr8	52758221	-	FBXO3	chr11	33763630	-
intron-3CDS	ENST00000541194	ENST00000484747		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3UTR	ENST00000541194	ENST00000302017		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3CDS	ENST00000537928	ENST00000484747		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3UTR	ENST00000537928	ENST00000302017		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3CDS	ENST00000378555	ENST00000484747		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3UTR	ENST00000378555	ENST00000302017		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3CDS	ENST00000322985	ENST00000484747		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3UTR	ENST00000322985	ENST00000302017		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3CDS	ENST00000465001	ENST00000484747		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
intron-3UTR	ENST00000465001	ENST00000302017		TCGA	LD	BRCA	TCGA-A8-A06U-01A	PODXL	chr7	131188743	-	ZNF467	chr7	149461767	-
In-frame	ENST00000265044	ENST00000476941		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
In-frame	ENST00000265044	ENST00000273482		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
In-frame	ENST00000467789	ENST00000476941		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
In-frame	ENST00000467789	ENST00000273482		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
In-frame	ENST00000476217	ENST00000476941		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
In-frame	ENST00000476217	ENST00000273482		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
intron-3CDS	ENST00000478842	ENST00000476941		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
intron-3CDS	ENST00000478842	ENST00000273482		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
intron-3CDS	ENST00000463503	ENST00000476941		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
intron-3CDS	ENST00000463503	ENST00000273482		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
intron-3CDS	ENST00000496050	ENST00000476941		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
intron-3CDS	ENST00000496050	ENST00000273482		TCGA	LD	BRCA	TCGA-A8-A06U-01A	SSR3	chr3	156272746	-	TRPC1	chr3	142521011	+
In-frame	ENST00000264335	ENST00000333813		TCGA	LD	BRCA	TCGA-A8-A06U-01A	YWHAE	chr17	1303341	-	TUSC5	chr17	1198785	+
5UTR-3CDS	ENST00000571732	ENST00000333813		TCGA	LD	BRCA	TCGA-A8-A06U-01A	YWHAE	chr17	1303341	-	TUSC5	chr17	1198785	+
In-frame	ENST00000573026	ENST00000333813		TCGA	LD	BRCA	TCGA-A8-A06U-01A	YWHAE	chr17	1303341	-	TUSC5	chr17	1198785	+
In-frame	ENST00000575977	ENST00000333813		TCGA	LD	BRCA	TCGA-A8-A06U-01A	YWHAE	chr17	1303341	-	TUSC5	chr17	1198785	+
5UTR-3CDS	ENST00000498643	ENST00000333813		TCGA	LD	BRCA	TCGA-A8-A06U-01A	YWHAE	chr17	1303341	-	TUSC5	chr17	1198785	+
intron-3CDS	ENST00000462705	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000462705	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000462705	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000393785	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000393785	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000393785	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000481632	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000481632	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000481632	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000471418	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000471418	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000471418	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000357258	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000357258	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000357258	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000464560	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000464560	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000464560	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000488663	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000488663	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000488663	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000474710	ENST00000352690		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-3CDS	ENST00000474710	ENST00000283285		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
intron-intron	ENST00000474710	ENST00000438817		TCGA	LD	BRCA	TCGA-A8-A06U-01A	ZBTB20	chr3	114819022	-	CD96	chr3	111366390	+
In-frame	ENST00000310343	ENST00000530124		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
Frame-shit	ENST00000310343	ENST00000257247		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
5CDS-5UTR	ENST00000310343	ENST00000525875		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
5CDS-intron	ENST00000310343	ENST00000378024		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
In-frame	ENST00000524655	ENST00000530124		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
Frame-shit	ENST00000524655	ENST00000257247		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
5CDS-5UTR	ENST00000524655	ENST00000525875		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
5CDS-intron	ENST00000524655	ENST00000378024		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000392657	ENST00000530124		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000392657	ENST00000257247		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-5UTR	ENST00000392657	ENST00000525875		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-intron	ENST00000392657	ENST00000378024		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000527272	ENST00000530124		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000527272	ENST00000257247		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-5UTR	ENST00000527272	ENST00000525875		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
intron-intron	ENST00000527272	ENST00000378024		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	ARHGAP32	chr11	128993341	-	AHNAK	chr11	62201363	-
In-frame	ENST00000301335	ENST00000544865		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
In-frame	ENST00000301335	ENST00000263073		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000301335	ENST00000354901		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000301335	ENST00000536871		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000301335	ENST00000573166		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
Frame-shit	ENST00000571650	ENST00000544865		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
Frame-shit	ENST00000571650	ENST00000263073		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000571650	ENST00000354901		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000571650	ENST00000536871		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000571650	ENST00000573166		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
In-frame	ENST00000382147	ENST00000544865		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
In-frame	ENST00000382147	ENST00000263073		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000382147	ENST00000354901		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000382147	ENST00000536871		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
5CDS-intron	ENST00000382147	ENST00000573166		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-3CDS	ENST00000412517	ENST00000544865		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-3CDS	ENST00000412517	ENST00000263073		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-intron	ENST00000412517	ENST00000354901		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-intron	ENST00000412517	ENST00000536871		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-intron	ENST00000412517	ENST00000573166		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-3CDS	ENST00000574274	ENST00000544865		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-3CDS	ENST00000574274	ENST00000263073		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-intron	ENST00000574274	ENST00000354901		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-intron	ENST00000574274	ENST00000536871		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
intron-intron	ENST00000574274	ENST00000573166		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	SLC43A2	chr17	1516489	-	SMG6	chr17	2187029	-
In-frame	ENST00000340353	ENST00000448775		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
5CDS-intron	ENST00000340353	ENST00000530371		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
intron-3CDS	ENST00000532959	ENST00000448775		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
intron-intron	ENST00000532959	ENST00000530371		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
In-frame	ENST00000305494	ENST00000448775		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
5CDS-intron	ENST00000305494	ENST00000530371		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
intron-3CDS	ENST00000535167	ENST00000448775		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
intron-intron	ENST00000535167	ENST00000530371		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
In-frame	ENST00000355734	ENST00000448775		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
5CDS-intron	ENST00000355734	ENST00000530371		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM135	chr11	86802437	+	CLMP	chr11	122955421	-
intron-3CDS	ENST00000414689	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-3CDS	ENST00000414689	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-intron	ENST00000414689	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-3CDS	ENST00000279396	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-3CDS	ENST00000279396	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-intron	ENST00000279396	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
3UTR-3CDS	ENST00000561899	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
3UTR-3CDS	ENST00000561899	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
3UTR-intron	ENST00000561899	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-3CDS	ENST00000566848	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-3CDS	ENST00000566848	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
intron-intron	ENST00000566848	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	TMEM219	chr16	29983099	+	CPB1	chr3	148558489	+
Frame-shit	ENST00000261497	ENST00000580599		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
Frame-shit	ENST00000261497	ENST00000394638		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
Frame-shit	ENST00000261497	ENST00000269053		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
5CDS-3UTR	ENST00000261497	ENST00000394637		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000537526	ENST00000580599		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000537526	ENST00000394638		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000537526	ENST00000269053		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3UTR	ENST00000537526	ENST00000394637		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000455117	ENST00000580599		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000455117	ENST00000394638		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3CDS	ENST00000455117	ENST00000269053		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
intron-3UTR	ENST00000455117	ENST00000394637		TCGA	LD	BRCA	TCGA-A8-A06Z-01A	USP22	chr17	20945978	-	SPACA3	chr17	31323861	+
Frame-shit	ENST00000578681	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000578681	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000578681	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000583590	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000583590	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000583590	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000359353	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000359353	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000359353	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000389924	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000389924	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000389924	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000457800	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000457800	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000457800	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
intron-3CDS	ENST00000582985	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
intron-3CDS	ENST00000582985	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
intron-3CDS	ENST00000582985	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A076-01A	DDX42	chr17	61888533	+	B4GALNT2	chr17	47230162	+
5CDS-5UTR	ENST00000259021	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000259021	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000454930	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000454930	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000509773	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000509773	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000510819	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000510819	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-5UTR	ENST00000424009	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5CDS-intron	ENST00000424009	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5UTR-5UTR	ENST00000503935	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5UTR-intron	ENST00000503935	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5UTR-5UTR	ENST00000435742	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
5UTR-intron	ENST00000435742	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
intron-5UTR	ENST00000513980	ENST00000307078		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
intron-intron	ENST00000513980	ENST00000375702		TCGA	LD	BRCA	TCGA-A8-A076-01A	KAT7	chr17	47869395	+	AXIN2	chr17	63554854	-
Frame-shit	ENST00000543378	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000543378	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000327564	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000327564	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000394713	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000394713	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000584368	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000584368	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000341671	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000341671	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
3UTR-3CDS	ENST00000581786	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
3UTR-3CDS	ENST00000581786	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A076-01A	LRRC37B	chr17	30349844	+	SUZ12	chr17	30325677	+
Frame-shit	ENST00000394126	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394126	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394126	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394126	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000394126	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000394126	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000356271	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000356271	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000356271	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000356271	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000356271	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000356271	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394128	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394128	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394128	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000394128	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000394128	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000394128	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
In-frame	ENST00000394127	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
In-frame	ENST00000394127	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
In-frame	ENST00000394127	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
In-frame	ENST00000394127	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000394127	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000394127	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000501516	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000501516	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000501516	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
Frame-shit	ENST00000501516	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000501516	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5CDS-intron	ENST00000501516	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5UTR-3CDS	ENST00000479829	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5UTR-3CDS	ENST00000479829	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5UTR-3CDS	ENST00000479829	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5UTR-3CDS	ENST00000479829	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5UTR-intron	ENST00000479829	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
5UTR-intron	ENST00000479829	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A076-01A	MED24	chr17	38209551	-	CEP112	chr17	63957716	-
In-frame	ENST00000310614	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A076-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
3UTR-3CDS	ENST00000359282	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000359282	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000603815	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000603815	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000437231	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000437231	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000447282	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000447282	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000549863	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000549863	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000359462	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000359462	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000546463	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000546463	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000552296	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000552296	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000552819	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000552819	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000455667	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000455667	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000439930	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000439930	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-3CDS	ENST00000548933	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
3UTR-5UTR	ENST00000548933	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
intron-3CDS	ENST00000541275	ENST00000322349		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
intron-5UTR	ENST00000541275	ENST00000547833		TCGA	LD	BRCA	TCGA-A8-A076-01A	PCBP2	chr12	53873315	+	EEA1	chr12	93258763	-
Frame-shit	ENST00000424789	ENST00000318698		TCGA	LD	BRCA	TCGA-A8-A076-01A	TANC2	chr17	61466905	+	ANKFN1	chr17	54517688	+
Frame-shit	ENST00000424789	ENST00000566473		TCGA	LD	BRCA	TCGA-A8-A076-01A	TANC2	chr17	61466905	+	ANKFN1	chr17	54517688	+
5CDS-intron	ENST00000424789	ENST00000574292		TCGA	LD	BRCA	TCGA-A8-A076-01A	TANC2	chr17	61466905	+	ANKFN1	chr17	54517688	+
Frame-shit	ENST00000389520	ENST00000318698		TCGA	LD	BRCA	TCGA-A8-A076-01A	TANC2	chr17	61466905	+	ANKFN1	chr17	54517688	+
Frame-shit	ENST00000389520	ENST00000566473		TCGA	LD	BRCA	TCGA-A8-A076-01A	TANC2	chr17	61466905	+	ANKFN1	chr17	54517688	+
5CDS-intron	ENST00000389520	ENST00000574292		TCGA	LD	BRCA	TCGA-A8-A076-01A	TANC2	chr17	61466905	+	ANKFN1	chr17	54517688	+
intron-intron	ENST00000583688	ENST00000542802		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
intron-intron	ENST00000583688	ENST00000312010		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
intron-intron	ENST00000583688	ENST00000449938		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
intron-intron	ENST00000583688	ENST00000588467		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
intron-intron	ENST00000583688	ENST00000589424		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
intron-intron	ENST00000583688	ENST00000590546		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000330889	ENST00000542802		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000330889	ENST00000312010		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000330889	ENST00000449938		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000330889	ENST00000588467		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000330889	ENST00000589424		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000330889	ENST00000590546		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000580525	ENST00000542802		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000580525	ENST00000312010		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000580525	ENST00000449938		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000580525	ENST00000588467		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000580525	ENST00000589424		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000580525	ENST00000590546		TCGA	LD	BRCA	TCGA-A8-A079-01A	ADAP2	chr17	29253936	+	USP36	chr17	76783740	-
intron-intron	ENST00000064778	ENST00000294309		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000064778	ENST00000542467		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000064778	ENST00000442692		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000450446	ENST00000294309		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000450446	ENST00000542467		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000450446	ENST00000442692		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000356467	ENST00000294309		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000356467	ENST00000542467		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-intron	ENST00000356467	ENST00000442692		TCGA	LD	BRCA	TCGA-A8-A079-01A	FAM168A	chr11	73117660	-	TPCN2	chr11	68902903	+
intron-3CDS	ENST00000367604	ENST00000356284		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000367604	ENST00000354536		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-intron	ENST00000367604	ENST00000477998		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000367603	ENST00000356284		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000367603	ENST00000354536		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-intron	ENST00000367603	ENST00000477998		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000012134	ENST00000356284		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000012134	ENST00000354536		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-intron	ENST00000012134	ENST00000477998		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000474532	ENST00000356284		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-3CDS	ENST00000474532	ENST00000354536		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
intron-intron	ENST00000474532	ENST00000477998		TCGA	LD	BRCA	TCGA-A8-A079-01A	HIVEP2	chr6	143267081	-	SMOC2	chr6	168999498	+
5CDS-intron	ENST00000534064	ENST00000526660		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000534064	ENST00000289575		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000534064	ENST00000341411		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000534064	ENST00000532236		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000534064	ENST00000531756		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000534064	ENST00000525650		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000534064	ENST00000454962		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000534064	ENST00000428359		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000535943	ENST00000526660		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000535943	ENST00000289575		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000535943	ENST00000341411		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000535943	ENST00000532236		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000535943	ENST00000531756		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000535943	ENST00000525650		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000535943	ENST00000454962		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000535943	ENST00000428359		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525931	ENST00000526660		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525931	ENST00000289575		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000525931	ENST00000341411		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525931	ENST00000532236		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525931	ENST00000531756		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525931	ENST00000525650		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525931	ENST00000454962		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000525931	ENST00000428359		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000529807	ENST00000526660		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000529807	ENST00000289575		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000529807	ENST00000341411		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000529807	ENST00000532236		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000529807	ENST00000531756		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000529807	ENST00000525650		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000529807	ENST00000454962		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000529807	ENST00000428359		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000527522	ENST00000526660		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000527522	ENST00000289575		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000527522	ENST00000341411		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000527522	ENST00000532236		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000527522	ENST00000531756		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000527522	ENST00000525650		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000527522	ENST00000454962		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000527522	ENST00000428359		TCGA	LD	BRCA	TCGA-A8-A079-01A	INTS4	chr11	77612467	-	SLCO2B1	chr11	74873700	+
In-frame	ENST00000293860	ENST00000400105		TCGA	LD	BRCA	TCGA-A8-A079-01A	POLR3K	chr16	101558	-	L3MBTL4	chr18	6215834	-
In-frame	ENST00000293860	ENST00000317931		TCGA	LD	BRCA	TCGA-A8-A079-01A	POLR3K	chr16	101558	-	L3MBTL4	chr18	6215834	-
In-frame	ENST00000293860	ENST00000284898		TCGA	LD	BRCA	TCGA-A8-A079-01A	POLR3K	chr16	101558	-	L3MBTL4	chr18	6215834	-
In-frame	ENST00000293860	ENST00000400104		TCGA	LD	BRCA	TCGA-A8-A079-01A	POLR3K	chr16	101558	-	L3MBTL4	chr18	6215834	-
In-frame	ENST00000293860	ENST00000535782		TCGA	LD	BRCA	TCGA-A8-A079-01A	POLR3K	chr16	101558	-	L3MBTL4	chr18	6215834	-
5CDS-intron	ENST00000293860	ENST00000578677		TCGA	LD	BRCA	TCGA-A8-A079-01A	POLR3K	chr16	101558	-	L3MBTL4	chr18	6215834	-
intron-3CDS	ENST00000526660	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000526660	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000526660	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000526660	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-intron	ENST00000526660	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000289575	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000289575	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000289575	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000289575	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
5CDS-intron	ENST00000289575	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000341411	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000341411	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000341411	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000341411	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
5CDS-intron	ENST00000341411	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000532236	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000532236	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000532236	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000532236	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
5CDS-intron	ENST00000532236	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000531756	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000531756	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000531756	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000531756	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-intron	ENST00000531756	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000525650	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000525650	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000525650	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-3CDS	ENST00000525650	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
intron-intron	ENST00000525650	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000454962	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000454962	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000454962	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000454962	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
5CDS-intron	ENST00000454962	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000428359	ENST00000281129		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000428359	ENST00000555265		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000428359	ENST00000216517		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000428359	ENST00000327841		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
5CDS-intron	ENST00000428359	ENST00000553717		TCGA	LD	BRCA	TCGA-A8-A079-01A	SLCO2B1	chr11	74876994	+	CEP128	chr14	81366373	-
Frame-shit	ENST00000297423	ENST00000297313		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000297423	ENST00000344277		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000297423	ENST00000522225		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000297423	ENST00000276500		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-3UTR	ENST00000297423	ENST00000517405		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000518074	ENST00000297313		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000518074	ENST00000344277		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000518074	ENST00000522225		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000518074	ENST00000276500		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-3UTR	ENST00000518074	ENST00000517405		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000541342	ENST00000297313		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
Frame-shit	ENST00000541342	ENST00000344277		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000541342	ENST00000522225		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-5UTR	ENST00000541342	ENST00000276500		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
5CDS-3UTR	ENST00000541342	ENST00000517405		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
3UTR-3CDS	ENST00000521214	ENST00000297313		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
3UTR-3CDS	ENST00000521214	ENST00000344277		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
3UTR-5UTR	ENST00000521214	ENST00000522225		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
3UTR-5UTR	ENST00000521214	ENST00000276500		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
3UTR-3UTR	ENST00000521214	ENST00000517405		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3CDS	ENST00000517693	ENST00000297313		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3CDS	ENST00000517693	ENST00000344277		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-5UTR	ENST00000517693	ENST00000522225		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-5UTR	ENST00000517693	ENST00000276500		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3UTR	ENST00000517693	ENST00000517405		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3CDS	ENST00000518060	ENST00000297313		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3CDS	ENST00000518060	ENST00000344277		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-5UTR	ENST00000518060	ENST00000522225		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-5UTR	ENST00000518060	ENST00000276500		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3UTR	ENST00000518060	ENST00000517405		TCGA	LD	BRCA	TCGA-A8-A079-01A	SPIDR	chr8	48206619	+	RGS20	chr8	54866636	+
intron-3CDS	ENST00000537855	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000537855	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000537855	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000537855	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
In-frame	ENST00000379096	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
5CDS-3UTR	ENST00000379096	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000379096	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000379096	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
In-frame	ENST00000518937	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
5CDS-3UTR	ENST00000518937	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000518937	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000518937	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000519303	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000519303	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000519303	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000519303	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000517427	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000517427	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000517427	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000517427	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000520527	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000520527	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000520527	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000520527	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000448733	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000448733	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000448733	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000448733	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000379097	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000379097	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000379097	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000379097	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000523395	ENST00000417640		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000523395	ENST00000521954		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000523395	ENST00000522820		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000523395	ENST00000521366		TCGA	LD	BRCA	TCGA-A8-A079-01A	TPD52	chr8	81083660	-	NECAB1	chr8	91813919	+
In-frame	ENST00000451813	ENST00000253925		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
In-frame	ENST00000451813	ENST00000389547		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
5CDS-intron	ENST00000451813	ENST00000530548		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
In-frame	ENST00000252015	ENST00000253925		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
In-frame	ENST00000252015	ENST00000389547		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
5CDS-intron	ENST00000252015	ENST00000530548		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-3CDS	ENST00000539834	ENST00000253925		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-3CDS	ENST00000539834	ENST00000389547		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-intron	ENST00000539834	ENST00000530548		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-3CDS	ENST00000432634	ENST00000253925		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-3CDS	ENST00000432634	ENST00000389547		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-intron	ENST00000432634	ENST00000530548		TCGA	LD	BRCA	TCGA-A8-A079-01A	TRPC4AP	chr20	33657099	-	PPFIA1	chr11	70118279	+
intron-3CDS	ENST00000340360	ENST00000064778		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
intron-3CDS	ENST00000340360	ENST00000450446		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
intron-3CDS	ENST00000340360	ENST00000356467		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
5UTR-3CDS	ENST00000321448	ENST00000064778		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
5UTR-3CDS	ENST00000321448	ENST00000450446		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
5UTR-3CDS	ENST00000321448	ENST00000356467		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
intron-3CDS	ENST00000527087	ENST00000064778		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
intron-3CDS	ENST00000527087	ENST00000450446		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
intron-3CDS	ENST00000527087	ENST00000356467		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
5UTR-3CDS	ENST00000533598	ENST00000064778		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
5UTR-3CDS	ENST00000533598	ENST00000450446		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
5UTR-3CDS	ENST00000533598	ENST00000356467		TCGA	LD	BRCA	TCGA-A8-A07B-01A	XRRA1	chr11	74644846	-	FAM168A	chr11	73141815	-
In-frame	ENST00000216807	ENST00000604948		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000216807	ENST00000557565		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000216807	ENST00000250377		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000216807	ENST00000321130		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000216807	ENST00000534898		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000216807	ENST00000603544		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000216807	ENST00000605870		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000216807	ENST00000603588		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000604948		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000557565		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000250377		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000321130		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000534898		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000603544		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000543183	ENST00000605870		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000543183	ENST00000603588		TCGA	LD	BRCA	TCGA-A8-A07C-01A	BRMS1L	chr14	36304129	+	KIAA0391	chr14	35735933	+
Frame-shit	ENST00000313401	ENST00000261712		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CDK5R1	chr17	30815558	+	PSMD11	chr17	30796017	+
Frame-shit	ENST00000313401	ENST00000457654		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CDK5R1	chr17	30815558	+	PSMD11	chr17	30796017	+
Frame-shit	ENST00000290913	ENST00000398015		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
5CDS-3UTR	ENST00000290913	ENST00000488154		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
5CDS-intron	ENST00000290913	ENST00000493838		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
Frame-shit	ENST00000508789	ENST00000398015		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
5CDS-3UTR	ENST00000508789	ENST00000488154		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
5CDS-intron	ENST00000508789	ENST00000493838		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
intron-3CDS	ENST00000515867	ENST00000398015		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
intron-3UTR	ENST00000515867	ENST00000488154		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
intron-intron	ENST00000515867	ENST00000493838		TCGA	LD	BRCA	TCGA-A8-A07C-01A	CHCHD6	chr3	126452065	+	EPHB1	chr3	134644658	+
5CDS-3UTR	ENST00000445597	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000445597	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-3UTR	ENST00000430092	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000430092	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-3UTR	ENST00000439375	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000439375	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-3UTR	ENST00000400952	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000400952	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-3UTR	ENST00000366849	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000366849	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-3UTR	ENST00000366850	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000366850	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
3UTR-3UTR	ENST00000498360	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
3UTR-intron	ENST00000498360	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-3UTR	ENST00000366848	ENST00000483512		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
5CDS-intron	ENST00000366848	ENST00000272133		TCGA	LD	BRCA	TCGA-A8-A07C-01A	DNAH14	chr1	225142800	+	CNIH3	chr1	224703443	+
In-frame	ENST00000262189	ENST00000406775		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
In-frame	ENST00000262189	ENST00000342771		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000262189	ENST00000403018		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000262189	ENST00000489774		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
In-frame	ENST00000355193	ENST00000406775		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
In-frame	ENST00000355193	ENST00000342771		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000355193	ENST00000403018		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
5CDS-intron	ENST00000355193	ENST00000489774		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000485655	ENST00000406775		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000485655	ENST00000342771		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000485655	ENST00000403018		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000485655	ENST00000489774		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000485241	ENST00000406775		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-3CDS	ENST00000485241	ENST00000342771		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000485241	ENST00000403018		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
intron-intron	ENST00000485241	ENST00000489774		TCGA	LD	BRCA	TCGA-A8-A07C-01A	KMT2C	chr7	152132711	-	AUTS2	chr7	69900738	+
5UTR-3CDS	ENST00000193029	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
5UTR-3CDS	ENST00000193029	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000522874	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000522874	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000361847	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000361847	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000524214	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000524214	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000561150	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000561150	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000517966	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000517966	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000523231	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000523231	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000524370	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000524370	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000522867	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000522867	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000520266	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000520266	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000519058	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000519058	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000522534	ENST00000565422		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
intron-3CDS	ENST00000522534	ENST00000536046		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MOK	chr14	102771299	-	ANKRD66	chr6	46719674	+
In-frame	ENST00000336273	ENST00000265431		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MTDH	chr8	98735263	+	CALB1	chr8	91094330	-
5CDS-intron	ENST00000336273	ENST00000518457		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MTDH	chr8	98735263	+	CALB1	chr8	91094330	-
In-frame	ENST00000519934	ENST00000265431		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MTDH	chr8	98735263	+	CALB1	chr8	91094330	-
5CDS-intron	ENST00000519934	ENST00000518457		TCGA	LD	BRCA	TCGA-A8-A07C-01A	MTDH	chr8	98735263	+	CALB1	chr8	91094330	-
5CDS-intron	ENST00000420696	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000420696	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000420696	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000420696	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000401534	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000401534	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000401534	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000401534	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000559240	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000559240	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000559240	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000559240	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000367897	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000367897	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000367897	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000367897	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000540236	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000540236	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000540236	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
5CDS-intron	ENST00000540236	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000560641	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000560641	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000560641	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000560641	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000474046	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000474046	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000474046	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000474046	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000485769	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000485769	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000485769	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000485769	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000540246	ENST00000484079		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000540246	ENST00000366926		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000540246	ENST00000536446		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
intron-intron	ENST00000540246	ENST00000536992		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PBX1	chr1	164532548	+	SLC30A10	chr1	219859074	-
Frame-shit	ENST00000264977	ENST00000260810		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
5CDS-intron	ENST00000264977	ENST00000511439		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
Frame-shit	ENST00000490467	ENST00000260810		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
5CDS-intron	ENST00000490467	ENST00000511439		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
Frame-shit	ENST00000334546	ENST00000260810		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
5CDS-intron	ENST00000334546	ENST00000511439		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
intron-3CDS	ENST00000492624	ENST00000260810		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
intron-intron	ENST00000492624	ENST00000511439		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
3UTR-3CDS	ENST00000469270	ENST00000260810		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
3UTR-intron	ENST00000469270	ENST00000511439		TCGA	LD	BRCA	TCGA-A8-A07C-01A	PPP2R3A	chr3	135825164	+	TOPBP1	chr3	133339191	-
5CDS-5UTR	ENST00000264926	ENST00000443950		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
5CDS-5UTR	ENST00000264926	ENST00000544000		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
5CDS-5UTR	ENST00000264926	ENST00000357065		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
5CDS-5UTR	ENST00000264926	ENST00000356053		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
5CDS-5UTR	ENST00000264926	ENST00000337970		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
5CDS-5UTR	ENST00000264926	ENST00000498176		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
intron-5UTR	ENST00000495087	ENST00000443950		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
intron-5UTR	ENST00000495087	ENST00000544000		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
intron-5UTR	ENST00000495087	ENST00000357065		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
intron-5UTR	ENST00000495087	ENST00000356053		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
intron-5UTR	ENST00000495087	ENST00000337970		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
intron-5UTR	ENST00000495087	ENST00000498176		TCGA	LD	BRCA	TCGA-A8-A07C-01A	RAD18	chr3	8940578	-	HNRNPF	chr10	43883384	-
Frame-shit	ENST00000402198	ENST00000409003		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000402198	ENST00000314727		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
5CDS-intron	ENST00000402198	ENST00000527515		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000402466	ENST00000409003		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000402466	ENST00000314727		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
5CDS-intron	ENST00000402466	ENST00000527515		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000406341	ENST00000409003		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000406341	ENST00000314727		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
5CDS-intron	ENST00000406341	ENST00000527515		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000407969	ENST00000409003		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000407969	ENST00000314727		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
5CDS-intron	ENST00000407969	ENST00000527515		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000302463	ENST00000409003		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000302463	ENST00000314727		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
5CDS-intron	ENST00000302463	ENST00000527515		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
intron-3CDS	ENST00000488236	ENST00000409003		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
intron-3CDS	ENST00000488236	ENST00000314727		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
intron-intron	ENST00000488236	ENST00000527515		TCGA	LD	BRCA	TCGA-A8-A07C-01A	SETD5	chr3	9516840	+	SAMD12	chr8	119593132	-
Frame-shit	ENST00000369405	ENST00000256413		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
Frame-shit	ENST00000369405	ENST00000382998		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
5CDS-intron	ENST00000369405	ENST00000592658		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
Frame-shit	ENST00000369404	ENST00000256413		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
Frame-shit	ENST00000369404	ENST00000382998		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
5CDS-intron	ENST00000369404	ENST00000592658		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
intron-3CDS	ENST00000482410	ENST00000256413		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
intron-3CDS	ENST00000482410	ENST00000382998		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
intron-intron	ENST00000482410	ENST00000592658		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZDHHC6	chr10	114198094	-	CTIF	chr18	46343592	+
intron-3CDS	ENST00000494118	ENST00000307363		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
intron-3CDS	ENST00000494118	ENST00000399402		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
intron-3CDS	ENST00000494118	ENST00000445488		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
intron-3CDS	ENST00000494118	ENST00000307377		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
intron-intron	ENST00000494118	ENST00000497796		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
Frame-shit	ENST00000281523	ENST00000307363		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
Frame-shit	ENST00000281523	ENST00000399402		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
Frame-shit	ENST00000281523	ENST00000445488		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
Frame-shit	ENST00000281523	ENST00000307377		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
5CDS-intron	ENST00000281523	ENST00000497796		TCGA	LD	BRCA	TCGA-A8-A07C-01A	ZNF385D	chr3	21792387	-	GLB1	chr3	33087724	-
intron-3CDS	ENST00000311172	ENST00000354190		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000311172	ENST00000398492		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000311172	ENST00000227214		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000311172	ENST00000398494		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000311172	ENST00000543085		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-intron	ENST00000311172	ENST00000544532		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-intron	ENST00000311172	ENST00000535129		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409314	ENST00000354190		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409314	ENST00000398492		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409314	ENST00000227214		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409314	ENST00000398494		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409314	ENST00000543085		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000409314	ENST00000544532		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000409314	ENST00000535129		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409418	ENST00000354190		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409418	ENST00000398492		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409418	ENST00000227214		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409418	ENST00000398494		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000409418	ENST00000543085		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000409418	ENST00000544532		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000409418	ENST00000535129		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000458644	ENST00000354190		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000458644	ENST00000398492		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000458644	ENST00000227214		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000458644	ENST00000398494		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000458644	ENST00000543085		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-intron	ENST00000458644	ENST00000544532		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-intron	ENST00000458644	ENST00000535129		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000409853	ENST00000354190		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000409853	ENST00000398492		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000409853	ENST00000227214		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000409853	ENST00000398494		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-3CDS	ENST00000409853	ENST00000543085		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-intron	ENST00000409853	ENST00000544532		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-intron	ENST00000409853	ENST00000535129		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000409263	ENST00000354190		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000409263	ENST00000398492		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000409263	ENST00000227214		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000409263	ENST00000398494		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-3CDS	ENST00000409263	ENST00000543085		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-intron	ENST00000409263	ENST00000544532		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
intron-intron	ENST00000409263	ENST00000535129		TCGA	LD	BRCA	TCGA-A8-A07E-01A	FCHSD2	chr11	72851076	-	PLEKHB1	chr11	73371798	+
5UTR-5UTR	ENST00000590898	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5UTR-5UTR	ENST00000590898	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5UTR-intron	ENST00000590898	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-5UTR	ENST00000399022	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-5UTR	ENST00000399022	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-intron	ENST00000399022	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000337059	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000337059	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
intron-intron	ENST00000337059	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-5UTR	ENST00000357384	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-5UTR	ENST00000357384	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-intron	ENST00000357384	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5UTR-5UTR	ENST00000588737	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5UTR-5UTR	ENST00000588737	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5UTR-intron	ENST00000588737	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-5UTR	ENST00000319040	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-5UTR	ENST00000319040	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
5CDS-intron	ENST00000319040	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000588459	ENST00000269187		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000588459	ENST00000590986		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
intron-intron	ENST00000588459	ENST00000440549		TCGA	LD	BRCA	TCGA-A8-A07G-01A	RPRD1A	chr18	33647217	-	SLC39A6	chr18	33706979	-
In-frame	ENST00000287218	ENST00000512175		TCGA	LD	BRCA	TCGA-A8-A07G-01A	ZFAND3	chr6	37897775	+	THEGL	chr4	57414956	+
5CDS-intron	ENST00000287218	ENST00000510716		TCGA	LD	BRCA	TCGA-A8-A07G-01A	ZFAND3	chr6	37897775	+	THEGL	chr4	57414956	+
In-frame	ENST00000373391	ENST00000512175		TCGA	LD	BRCA	TCGA-A8-A07G-01A	ZFAND3	chr6	37897775	+	THEGL	chr4	57414956	+
5CDS-intron	ENST00000373391	ENST00000510716		TCGA	LD	BRCA	TCGA-A8-A07G-01A	ZFAND3	chr6	37897775	+	THEGL	chr4	57414956	+
intron-3CDS	ENST00000463847	ENST00000512175		TCGA	LD	BRCA	TCGA-A8-A07G-01A	ZFAND3	chr6	37897775	+	THEGL	chr4	57414956	+
intron-intron	ENST00000463847	ENST00000510716		TCGA	LD	BRCA	TCGA-A8-A07G-01A	ZFAND3	chr6	37897775	+	THEGL	chr4	57414956	+
5UTR-3CDS	ENST00000368346	ENST00000368130		TCGA	LD	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159038491	-
5UTR-5UTR	ENST00000368346	ENST00000411768		TCGA	LD	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159038491	-
5UTR-3CDS	ENST00000392403	ENST00000368130		TCGA	LD	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159038491	-
5UTR-5UTR	ENST00000392403	ENST00000411768		TCGA	LD	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159038491	-
5UTR-3CDS	ENST00000548830	ENST00000368130		TCGA	LD	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159038491	-
5UTR-5UTR	ENST00000548830	ENST00000411768		TCGA	LD	BRCA	TCGA-A8-A07I-01A	ASH1L	chr1	155531944	-	AIM2	chr1	159038491	-
In-frame	ENST00000318008	ENST00000431231		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000318008	ENST00000437668		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000318008	ENST00000582409		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000318008	ENST00000443378		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5UTR-3CDS	ENST00000433206	ENST00000431231		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5UTR-3CDS	ENST00000433206	ENST00000437668		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5UTR-3UTR	ENST00000433206	ENST00000582409		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5UTR-5UTR	ENST00000433206	ENST00000443378		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000435347	ENST00000431231		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000435347	ENST00000437668		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000435347	ENST00000582409		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000435347	ENST00000443378		TCGA	LD	BRCA	TCGA-A8-A07I-01A	LASP1	chr17	37026511	+	ARHGAP23	chr17	36614346	+
5UTR-3CDS	ENST00000482954	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
5UTR-intron	ENST00000482954	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
5UTR-intron	ENST00000482954	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
5UTR-intron	ENST00000482954	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
5UTR-intron	ENST00000482954	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
5UTR-intron	ENST00000482954	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000476279	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476279	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476279	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476279	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476279	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476279	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000247866	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000247866	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000247866	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000247866	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000247866	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000247866	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000461457	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000461457	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000461457	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000461457	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000461457	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000461457	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000465506	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000465506	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000465506	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000465506	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000465506	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000465506	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000464564	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000464564	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000464564	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000464564	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000464564	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000464564	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000204307	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000204307	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000204307	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000204307	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000204307	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000204307	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000460088	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000460088	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000460088	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000460088	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000460088	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000460088	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000472695	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000472695	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000472695	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000472695	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000472695	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000472695	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000476470	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476470	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476470	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476470	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476470	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000476470	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000471136	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000471136	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000471136	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000471136	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000471136	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000471136	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-3CDS	ENST00000475276	ENST00000404039		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000475276	ENST00000406326		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000475276	ENST00000377770		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000475276	ENST00000332007		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000475276	ENST00000496611		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
intron-intron	ENST00000475276	ENST00000427557		TCGA	LD	BRCA	TCGA-A8-A07I-01A	NDUFB2	chr7	140390613	+	DPP6	chr7	154429531	+
In-frame	ENST00000269701	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A07L-01A	AKAP8	chr19	15469778	-	VMP1	chr17	57842332	+
In-frame	ENST00000269701	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A07L-01A	AKAP8	chr19	15469778	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000269701	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A07L-01A	AKAP8	chr19	15469778	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000269701	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A07L-01A	AKAP8	chr19	15469778	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000269701	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A07L-01A	AKAP8	chr19	15469778	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000269701	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A07L-01A	AKAP8	chr19	15469778	-	VMP1	chr17	57842332	+
5UTR-3CDS	ENST00000369443	ENST00000336338		TCGA	LD	BRCA	TCGA-A8-A07L-01A	GDAP2	chr1	118472071	-	SPAG17	chr1	118539366	-
5UTR-intron	ENST00000369443	ENST00000492438		TCGA	LD	BRCA	TCGA-A8-A07L-01A	GDAP2	chr1	118472071	-	SPAG17	chr1	118539366	-
5UTR-3CDS	ENST00000369442	ENST00000336338		TCGA	LD	BRCA	TCGA-A8-A07L-01A	GDAP2	chr1	118472071	-	SPAG17	chr1	118539366	-
5UTR-intron	ENST00000369442	ENST00000492438		TCGA	LD	BRCA	TCGA-A8-A07L-01A	GDAP2	chr1	118472071	-	SPAG17	chr1	118539366	-
intron-3CDS	ENST00000464026	ENST00000336338		TCGA	LD	BRCA	TCGA-A8-A07L-01A	GDAP2	chr1	118472071	-	SPAG17	chr1	118539366	-
intron-intron	ENST00000464026	ENST00000492438		TCGA	LD	BRCA	TCGA-A8-A07L-01A	GDAP2	chr1	118472071	-	SPAG17	chr1	118539366	-
In-frame	ENST00000535741	ENST00000422698		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
Frame-shit	ENST00000535741	ENST00000441710		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000447913		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000433738		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000446862		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000494737		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000375726		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000448103		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000535741	ENST00000508062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
Frame-shit	ENST00000510413	ENST00000422698		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
In-frame	ENST00000510413	ENST00000441710		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000447913		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000433738		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000446862		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000494737		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000375726		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000448103		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000510413	ENST00000508062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-3CDS	ENST00000503716	ENST00000422698		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-3CDS	ENST00000503716	ENST00000441710		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000447913		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000433738		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000446862		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000494737		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000375726		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000448103		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-intron	ENST00000503716	ENST00000508062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
In-frame	ENST00000357115	ENST00000422698		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
Frame-shit	ENST00000357115	ENST00000441710		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000447913		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000433738		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000446862		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000494737		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000375726		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000448103		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000357115	ENST00000508062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
Frame-shit	ENST00000507224	ENST00000422698		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
In-frame	ENST00000507224	ENST00000441710		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000447913		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000433738		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000446862		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000494737		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000375726		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000448103		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
5CDS-intron	ENST00000507224	ENST00000508062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	LRBA	chr4	151604703	-	CASP12	chr11	104768195	-
intron-3CDS	ENST00000262811	ENST00000379656		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MAST3	chr19	18221551	+	ARRDC2	chr19	18123722	+
intron-3CDS	ENST00000262811	ENST00000222250		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MAST3	chr19	18221551	+	ARRDC2	chr19	18123722	+
intron-intron	ENST00000262811	ENST00000608009		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MAST3	chr19	18221551	+	ARRDC2	chr19	18123722	+
3UTR-3CDS	ENST00000608648	ENST00000379656		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MAST3	chr19	18221551	+	ARRDC2	chr19	18123722	+
3UTR-3CDS	ENST00000608648	ENST00000222250		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MAST3	chr19	18221551	+	ARRDC2	chr19	18123722	+
3UTR-intron	ENST00000608648	ENST00000608009		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MAST3	chr19	18221551	+	ARRDC2	chr19	18123722	+
In-frame	ENST00000378714	ENST00000263036		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
In-frame	ENST00000378714	ENST00000378764		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378714	ENST00000482140		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378714	ENST00000378757		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378714	ENST00000378752		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378714	ENST00000378748		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378714	ENST00000378747		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
In-frame	ENST00000484800	ENST00000263036		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
In-frame	ENST00000484800	ENST00000378764		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000484800	ENST00000482140		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000484800	ENST00000378757		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000484800	ENST00000378752		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000484800	ENST00000378748		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000484800	ENST00000378747		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
In-frame	ENST00000378694	ENST00000263036		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
In-frame	ENST00000378694	ENST00000378764		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378694	ENST00000482140		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378694	ENST00000378757		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378694	ENST00000378752		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378694	ENST00000378748		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378694	ENST00000378747		TCGA	LD	BRCA	TCGA-A8-A07L-01A	MCM10	chr10	13225100	+	OPTN	chr10	13154453	+
5UTR-3CDS	ENST00000491545	ENST00000216218		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SLC25A17	chr22	41215199	-	ST13	chr22	41240913	-
Frame-shit	ENST00000435456	ENST00000216218		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SLC25A17	chr22	41215199	-	ST13	chr22	41240913	-
intron-3CDS	ENST00000402844	ENST00000216218		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SLC25A17	chr22	41215199	-	ST13	chr22	41240913	-
5UTR-3CDS	ENST00000544408	ENST00000216218		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SLC25A17	chr22	41215199	-	ST13	chr22	41240913	-
Frame-shit	ENST00000542412	ENST00000216218		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SLC25A17	chr22	41215199	-	ST13	chr22	41240913	-
5UTR-3CDS	ENST00000357395	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000357395	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000357395	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000357395	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000357395	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000357395	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000357395	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-intron	ENST00000357395	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000358025	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-intron	ENST00000358025	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000344113	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-intron	ENST00000344113	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000341472	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-intron	ENST00000341472	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000356081	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-intron	ENST00000356081	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554584	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000554584	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555002	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000555002	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000394768	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000394768	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000556725	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000556725	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000553455	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000553455	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000555022	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000555022	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000554805	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000554805	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000458046	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000458046	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000536774		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000327441		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000539062		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000556451		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000396294		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000545536		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000441438	ENST00000537471		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
intron-intron	ENST00000441438	ENST00000539174		TCGA	LD	BRCA	TCGA-A8-A07L-01A	SYNE2	chr14	64319861	+	MIPOL1	chr14	37892060	+
5UTR-5UTR	ENST00000541110	ENST00000372014		TCGA	LD	BRCA	TCGA-A8-A07L-01A	TRERF1	chr6	42418915	-	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000372917	ENST00000372014		TCGA	LD	BRCA	TCGA-A8-A07L-01A	TRERF1	chr6	42418915	-	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000372922	ENST00000372014		TCGA	LD	BRCA	TCGA-A8-A07L-01A	TRERF1	chr6	42418915	-	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000340840	ENST00000372014		TCGA	LD	BRCA	TCGA-A8-A07L-01A	TRERF1	chr6	42418915	-	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000354325	ENST00000372014		TCGA	LD	BRCA	TCGA-A8-A07L-01A	TRERF1	chr6	42418915	-	MRPL14	chr6	44084366	-
Frame-shit	ENST00000394919	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394919	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394919	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394919	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394919	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000342444	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000342444	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000342444	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000342444	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000342444	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000317168	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000545550	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000545550	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000545550	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000545550	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000545550	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000317126	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000317126	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000317126	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000317126	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
In-frame	ENST00000317126	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
Frame-shit	ENST00000394915	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000401998		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000361114		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000398761		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000418483		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000492502	ENST00000398763		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-intron	ENST00000492502	ENST00000604025		TCGA	LD	BRCA	TCGA-A8-A07O-01A	ASCC1	chr10	73892815	-	MICU1	chr10	74135630	-
intron-3CDS	ENST00000406516	ENST00000319449		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000406516	ENST00000377001		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000406516	ENST00000437570		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000406516	ENST00000393438		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-intron	ENST00000406516	ENST00000508797		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000444929	ENST00000319449		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000444929	ENST00000377001		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000444929	ENST00000437570		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000444929	ENST00000393438		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
5CDS-intron	ENST00000444929	ENST00000508797		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000331728	ENST00000319449		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000331728	ENST00000377001		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000331728	ENST00000437570		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
In-frame	ENST00000331728	ENST00000393438		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
5CDS-intron	ENST00000331728	ENST00000508797		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000333611	ENST00000319449		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000333611	ENST00000377001		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000333611	ENST00000437570		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000333611	ENST00000393438		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-intron	ENST00000333611	ENST00000508797		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000340552	ENST00000319449		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000340552	ENST00000377001		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000340552	ENST00000437570		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000340552	ENST00000393438		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-intron	ENST00000340552	ENST00000508797		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000467301	ENST00000319449		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000467301	ENST00000377001		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000467301	ENST00000437570		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-3CDS	ENST00000467301	ENST00000393438		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
intron-intron	ENST00000467301	ENST00000508797		TCGA	LD	BRCA	TCGA-A8-A07O-01A	LIMK2	chr22	31621805	+	RUFY1	chr5	179007948	+
5CDS-intron	ENST00000366577	ENST00000340979		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000366577	ENST00000368131		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000366577	ENST00000368132		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000366577	ENST00000295809		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000366577	ENST00000430894		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000366577	ENST00000359709		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000366577	ENST00000448393		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000340979		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000368131		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000368132		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000295809		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000430894		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000359709		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000418145	ENST00000448393		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000340979		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000368131		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000368132		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000295809		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000430894		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000359709		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-intron	ENST00000535889	ENST00000448393		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000340979		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000368131		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000368132		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000295809		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000430894		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000359709		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
intron-intron	ENST00000470570	ENST00000448393		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MTR	chr1	237001899	+	IFI16	chr1	159019222	+
5CDS-5UTR	ENST00000356056	ENST00000371348		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000356056	ENST00000371344		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000356056	ENST00000234831		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000356056	ENST00000371341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000356056	ENST00000470395		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000356056	ENST00000371337		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000444904	ENST00000371348		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000444904	ENST00000371344		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000444904	ENST00000234831		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000444904	ENST00000371341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000444904	ENST00000470395		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000444904	ENST00000371337		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000424560	ENST00000371348		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000424560	ENST00000371344		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000424560	ENST00000234831		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000424560	ENST00000371341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000424560	ENST00000470395		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000424560	ENST00000371337		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000564571	ENST00000371348		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000564571	ENST00000371344		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000564571	ENST00000234831		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000564571	ENST00000371341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000564571	ENST00000470395		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000564571	ENST00000371337		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000566885	ENST00000371348		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000566885	ENST00000371344		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000566885	ENST00000234831		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-5UTR	ENST00000566885	ENST00000371341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000566885	ENST00000470395		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5CDS-intron	ENST00000566885	ENST00000371337		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5UTR-5UTR	ENST00000563542	ENST00000371348		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5UTR-5UTR	ENST00000563542	ENST00000371344		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5UTR-5UTR	ENST00000563542	ENST00000234831		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5UTR-5UTR	ENST00000563542	ENST00000371341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5UTR-intron	ENST00000563542	ENST00000470395		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
5UTR-intron	ENST00000563542	ENST00000371337		TCGA	LD	BRCA	TCGA-A8-A07O-01A	MYO9A	chr15	72208711	-	TMEM59	chr1	54509198	-
In-frame	ENST00000322644	ENST00000308027		TCGA	LD	BRCA	TCGA-A8-A07O-01A	POLR2A	chr17	7399392	+	SLC16A13	chr17	6941471	+
In-frame	ENST00000572844	ENST00000308027		TCGA	LD	BRCA	TCGA-A8-A07O-01A	POLR2A	chr17	7399392	+	SLC16A13	chr17	6941471	+
5UTR-3CDS	ENST00000494188	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5UTR-3CDS	ENST00000494188	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5UTR-5UTR	ENST00000494188	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000409892	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000409892	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5CDS-5UTR	ENST00000409892	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000409784	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000409784	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5CDS-5UTR	ENST00000409784	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000398529	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000398529	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5CDS-5UTR	ENST00000398529	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000409751	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000409751	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5CDS-5UTR	ENST00000409751	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
intron-3CDS	ENST00000260638	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
intron-3CDS	ENST00000260638	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
intron-5UTR	ENST00000260638	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000356214	ENST00000356388		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
In-frame	ENST00000356214	ENST00000443619		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
5CDS-5UTR	ENST00000356214	ENST00000474228		TCGA	LD	BRCA	TCGA-A8-A07O-01A	RAB1A	chr2	65357027	-	SPRED2	chr2	65544017	-
3UTR-3CDS	ENST00000550067	ENST00000324341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SCYL2	chr12	100676925	+	FAM71C	chr12	100043066	+
In-frame	ENST00000360820	ENST00000324341		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SCYL2	chr12	100676925	+	FAM71C	chr12	100043066	+
intron-3UTR	ENST00000295702	ENST00000481208		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000295702	ENST00000343744		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000295702	ENST00000371316		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000529008	ENST00000481208		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000529008	ENST00000343744		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000529008	ENST00000371316		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000496742	ENST00000481208		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000496742	ENST00000343744		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000496742	ENST00000371316		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000480567	ENST00000481208		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000480567	ENST00000343744		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-3UTR	ENST00000480567	ENST00000371316		TCGA	LD	BRCA	TCGA-A8-A07O-01A	SSR2	chr1	155987923	-	ACOT11	chr1	55073615	+
intron-5UTR	ENST00000360605	ENST00000585603		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-intron	ENST00000360605	ENST00000221770		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-intron	ENST00000360605	ENST00000392279		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-intron	ENST00000360605	ENST00000591824		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-5UTR	ENST00000542441	ENST00000585603		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000542441	ENST00000221770		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000542441	ENST00000392279		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000542441	ENST00000591824		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5UTR-5UTR	ENST00000392271	ENST00000585603		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5UTR-intron	ENST00000392271	ENST00000221770		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5UTR-intron	ENST00000392271	ENST00000392279		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5UTR-intron	ENST00000392271	ENST00000591824		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-5UTR	ENST00000312051	ENST00000585603		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000312051	ENST00000221770		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000312051	ENST00000392279		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000312051	ENST00000591824		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-5UTR	ENST00000574176	ENST00000585603		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-intron	ENST00000574176	ENST00000221770		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-intron	ENST00000574176	ENST00000392279		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
intron-intron	ENST00000574176	ENST00000591824		TCGA	LD	BRCA	TCGA-A8-A07O-01A	URI1	chr19	30433571	+	POP4	chr19	30097103	+
5CDS-intron	ENST00000262144	ENST00000332272		TCGA	LD	BRCA	TCGA-A8-A07O-01A	WDR59	chr16	74937845	-	CHST6	chr16	75524667	-
5CDS-5UTR	ENST00000262144	ENST00000390664		TCGA	LD	BRCA	TCGA-A8-A07O-01A	WDR59	chr16	74937845	-	CHST6	chr16	75524667	-
intron-intron	ENST00000562331	ENST00000332272		TCGA	LD	BRCA	TCGA-A8-A07O-01A	WDR59	chr16	74937845	-	CHST6	chr16	75524667	-
intron-5UTR	ENST00000562331	ENST00000390664		TCGA	LD	BRCA	TCGA-A8-A07O-01A	WDR59	chr16	74937845	-	CHST6	chr16	75524667	-
5UTR-3CDS	ENST00000433642	ENST00000261250		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
5UTR-3CDS	ENST00000433642	ENST00000545746		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
5UTR-5UTR	ENST00000433642	ENST00000509318		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
intron-3CDS	ENST00000587722	ENST00000261250		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
intron-3CDS	ENST00000587722	ENST00000545746		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
intron-5UTR	ENST00000587722	ENST00000509318		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
intron-3CDS	ENST00000588362	ENST00000261250		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
intron-3CDS	ENST00000588362	ENST00000545746		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
intron-5UTR	ENST00000588362	ENST00000509318		TCGA	LD	BRCA	TCGA-A8-A07R-01A	BLOC1S3	chr19	45682089	+	C12orf4	chr12	4614546	-
In-frame	ENST00000269033	ENST00000357668		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-5UTR	ENST00000269033	ENST00000518721		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-intron	ENST00000269033	ENST00000520625		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
In-frame	ENST00000540801	ENST00000357668		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-5UTR	ENST00000540801	ENST00000518721		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-intron	ENST00000540801	ENST00000520625		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
intron-3CDS	ENST00000324677	ENST00000357668		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
intron-5UTR	ENST00000324677	ENST00000518721		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
intron-intron	ENST00000324677	ENST00000520625		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
Frame-shit	ENST00000582084	ENST00000357668		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-5UTR	ENST00000582084	ENST00000518721		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-intron	ENST00000582084	ENST00000520625		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
In-frame	ENST00000590153	ENST00000357668		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-5UTR	ENST00000590153	ENST00000518721		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-intron	ENST00000590153	ENST00000520625		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
In-frame	ENST00000579954	ENST00000357668		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-5UTR	ENST00000579954	ENST00000518721		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
5CDS-intron	ENST00000579954	ENST00000520625		TCGA	LD	BRCA	TCGA-A8-A07R-01A	SSH2	chr17	28256956	-	ASAP1	chr8	131414216	-
In-frame	ENST00000360768	ENST00000304895		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
In-frame	ENST00000360768	ENST00000421103		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
In-frame	ENST00000360768	ENST00000345660		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
5CDS-intron	ENST00000360768	ENST00000476486		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
In-frame	ENST00000434382	ENST00000304895		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
In-frame	ENST00000434382	ENST00000421103		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
In-frame	ENST00000434382	ENST00000345660		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
5CDS-intron	ENST00000434382	ENST00000476486		TCGA	LD	BRCA	TCGA-A8-A07R-01A	VKORC1L1	chr7	65338552	+	GUSB	chr7	65435353	-
Frame-shit	ENST00000354300	ENST00000286190		TCGA	LD	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202195245	-
Frame-shit	ENST00000354300	ENST00000405148		TCGA	LD	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202195245	-
Frame-shit	ENST00000354300	ENST00000392257		TCGA	LD	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202195245	-
Frame-shit	ENST00000354300	ENST00000439709		TCGA	LD	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202195245	-
5CDS-5UTR	ENST00000354300	ENST00000448967		TCGA	LD	BRCA	TCGA-A8-A07U-01A	PPTC7	chr12	111020614	-	ALS2CR12	chr2	202195245	-
In-frame	ENST00000367723	ENST00000358155		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000367733		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000355305		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000367731		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000520906		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
In-frame	ENST00000608151	ENST00000358155		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000367733		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000355305		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000367731		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000520906		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
In-frame	ENST00000610051	ENST00000358155		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000367733		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000355305		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000367731		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000520906		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
In-frame	ENST00000263688	ENST00000358155		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000367733		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000355305		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000367731		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000520906		TCGA	LD	BRCA	TCGA-A8-A07U-01A	SUCO	chr1	172560211	+	DNM3	chr1	172348158	+
5UTR-3CDS	ENST00000568956	ENST00000301178		TCGA	LD	BRCA	TCGA-A8-A07U-01A	ZNF865	chr19	56117098	+	AXL	chr19	41748788	+
5UTR-3CDS	ENST00000568956	ENST00000359092		TCGA	LD	BRCA	TCGA-A8-A07U-01A	ZNF865	chr19	56117098	+	AXL	chr19	41748788	+
5UTR-intron	ENST00000568956	ENST00000594880		TCGA	LD	BRCA	TCGA-A8-A07U-01A	ZNF865	chr19	56117098	+	AXL	chr19	41748788	+
5UTR-intron	ENST00000568956	ENST00000593513		TCGA	LD	BRCA	TCGA-A8-A07U-01A	ZNF865	chr19	56117098	+	AXL	chr19	41748788	+
intron-intron	ENST00000490577	ENST00000560386		TCGA	LD	BRCA	TCGA-A8-A07W-01A	DLEU1	chr13	50657330	+	DPH6	chr15	35703097	-
intron-intron	ENST00000490577	ENST00000256538		TCGA	LD	BRCA	TCGA-A8-A07W-01A	DLEU1	chr13	50657330	+	DPH6	chr15	35703097	-
intron-intron	ENST00000490577	ENST00000440392		TCGA	LD	BRCA	TCGA-A8-A07W-01A	DLEU1	chr13	50657330	+	DPH6	chr15	35703097	-
intron-intron	ENST00000378180	ENST00000560386		TCGA	LD	BRCA	TCGA-A8-A07W-01A	DLEU1	chr13	50657330	+	DPH6	chr15	35703097	-
intron-intron	ENST00000378180	ENST00000256538		TCGA	LD	BRCA	TCGA-A8-A07W-01A	DLEU1	chr13	50657330	+	DPH6	chr15	35703097	-
intron-intron	ENST00000378180	ENST00000440392		TCGA	LD	BRCA	TCGA-A8-A07W-01A	DLEU1	chr13	50657330	+	DPH6	chr15	35703097	-
Frame-shit	ENST00000396842	ENST00000449107		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
Frame-shit	ENST00000396842	ENST00000303498		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
Frame-shit	ENST00000396842	ENST00000437172		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5CDS-5UTR	ENST00000396842	ENST00000383778		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5CDS-3UTR	ENST00000396842	ENST00000482824		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5UTR-3CDS	ENST00000432764	ENST00000449107		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5UTR-3CDS	ENST00000432764	ENST00000303498		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5UTR-3CDS	ENST00000432764	ENST00000437172		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5UTR-5UTR	ENST00000432764	ENST00000383778		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
5UTR-3UTR	ENST00000432764	ENST00000482824		TCGA	LD	BRCA	TCGA-A8-A07W-01A	EAF1	chr3	15469389	+	BTD	chr3	15676931	+
In-frame	ENST00000309364	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000309364	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000309364	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000309364	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000309364	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000359180	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000359180	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000359180	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000359180	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000359180	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000317589	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000317589	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000317589	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000317589	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000317589	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000355397	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000355397	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000355397	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000355397	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000355397	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000429027	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000429027	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000429027	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000429027	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000429027	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5UTR-3CDS	ENST00000539256	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5UTR-5UTR	ENST00000539256	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5UTR-intron	ENST00000539256	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5UTR-intron	ENST00000539256	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5UTR-intron	ENST00000539256	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000299275	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000299275	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000299275	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000299275	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000299275	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000538714	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000538714	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000538714	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000538714	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000538714	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-3CDS	ENST00000543806	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-5UTR	ENST00000543806	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000543806	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000543806	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000543806	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-3CDS	ENST00000424268	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-5UTR	ENST00000424268	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000424268	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000424268	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000424268	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000540972	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-5UTR	ENST00000540972	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000540972	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000540972	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
5CDS-intron	ENST00000540972	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-3CDS	ENST00000510738	ENST00000396037		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-5UTR	ENST00000510738	ENST00000539510		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000510738	ENST00000536558		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000510738	ENST00000404299		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
intron-intron	ENST00000510738	ENST00000381424		TCGA	LD	BRCA	TCGA-A8-A07W-01A	PLEKHA5	chr12	19285384	+	ST8SIA1	chr12	22440227	-
In-frame	ENST00000300737	ENST00000396825		TCGA	LD	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4103581	+	FITM2	chr20	42935880	-
In-frame	ENST00000527651	ENST00000396825		TCGA	LD	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4103581	+	FITM2	chr20	42935880	-
intron-3CDS	ENST00000527484	ENST00000396825		TCGA	LD	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4103581	+	FITM2	chr20	42935880	-
In-frame	ENST00000533977	ENST00000396825		TCGA	LD	BRCA	TCGA-A8-A07W-01A	STIM1	chr11	4103581	+	FITM2	chr20	42935880	-
intron-3CDS	ENST00000397228	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000397228	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-3CDS	ENST00000523887	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000523887	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-3CDS	ENST00000276461	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000276461	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-3CDS	ENST00000518586	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000518586	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-3CDS	ENST00000335171	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000335171	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-3CDS	ENST00000523107	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000523107	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-3CDS	ENST00000519638	ENST00000345060		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
intron-intron	ENST00000519638	ENST00000520341		TCGA	LD	BRCA	TCGA-A8-A081-01A	ERLIN2	chr8	37611228	+	ADRB3	chr8	37823740	-
In-frame	ENST00000398645	ENST00000239374		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
In-frame	ENST00000398645	ENST00000367290		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
5CDS-intron	ENST00000398645	ENST00000544131		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
In-frame	ENST00000529006	ENST00000239374		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
In-frame	ENST00000529006	ENST00000367290		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
5CDS-intron	ENST00000529006	ENST00000544131		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000526258	ENST00000239374		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000526258	ENST00000367290		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-intron	ENST00000526258	ENST00000544131		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000308783	ENST00000239374		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000308783	ENST00000367290		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-intron	ENST00000308783	ENST00000544131		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000530342	ENST00000239374		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000530342	ENST00000367290		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-intron	ENST00000530342	ENST00000544131		TCGA	LD	BRCA	TCGA-A8-A081-01A	KDM2A	chr11	66888829	+	CCDC170	chr6	151936578	+
intron-3CDS	ENST00000449833	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000449833	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449833	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449833	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449833	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449833	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000409161	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000409161	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409161	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409161	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409161	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409161	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000423696	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000423696	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000423696	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000423696	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000423696	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000423696	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000338508	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000338508	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000338508	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000338508	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000338508	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000338508	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000409530	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000409530	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409530	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409530	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409530	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000409530	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000449116	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000449116	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449116	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449116	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449116	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000449116	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000357171	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000357171	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000357171	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000357171	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000357171	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000357171	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000468619	ENST00000377559		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-3CDS	ENST00000468619	ENST00000265459		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000468619	ENST00000301894		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000468619	ENST00000377551		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000468619	ENST00000409571		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
intron-intron	ENST00000468619	ENST00000496291		TCGA	LD	BRCA	TCGA-A8-A081-01A	SHANK2	chr11	70963471	-	NRXN2	chr11	64465264	-
5CDS-intron	ENST00000424789	ENST00000287461		TCGA	LD	BRCA	TCGA-A8-A081-01A	TANC2	chr17	61493035	+	ZNF689	chr16	30635190	-
5CDS-5UTR	ENST00000424789	ENST00000566673		TCGA	LD	BRCA	TCGA-A8-A081-01A	TANC2	chr17	61493035	+	ZNF689	chr16	30635190	-
5CDS-intron	ENST00000389520	ENST00000287461		TCGA	LD	BRCA	TCGA-A8-A081-01A	TANC2	chr17	61493035	+	ZNF689	chr16	30635190	-
5CDS-5UTR	ENST00000389520	ENST00000566673		TCGA	LD	BRCA	TCGA-A8-A081-01A	TANC2	chr17	61493035	+	ZNF689	chr16	30635190	-
5CDS-3UTR	ENST00000545606	ENST00000373574		TCGA	LD	BRCA	TCGA-A8-A083-01A	CAND1	chr12	67705542	+	WDR38	chr9	127620017	+
intron-3UTR	ENST00000539109	ENST00000373574		TCGA	LD	BRCA	TCGA-A8-A083-01A	CAND1	chr12	67705542	+	WDR38	chr9	127620017	+
5UTR-3CDS	ENST00000378330	ENST00000521992		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000378330	ENST00000541580		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000378330	ENST00000319165		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000378330	ENST00000518005		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000378330	ENST00000290567		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000378330	ENST00000520435		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-3CDS	ENST00000301030	ENST00000521992		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000301030	ENST00000541580		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000301030	ENST00000319165		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000301030	ENST00000518005		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000301030	ENST00000290567		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5UTR-intron	ENST00000301030	ENST00000520435		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-3CDS	ENST00000563291	ENST00000521992		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000563291	ENST00000541580		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000563291	ENST00000319165		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000563291	ENST00000518005		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000563291	ENST00000290567		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000563291	ENST00000520435		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-3CDS	ENST00000567736	ENST00000521992		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000567736	ENST00000541580		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000567736	ENST00000319165		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000567736	ENST00000518005		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000567736	ENST00000290567		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
intron-intron	ENST00000567736	ENST00000520435		TCGA	LD	BRCA	TCGA-A8-A084-01A	ANKRD11	chr16	89484692	-	CES5A	chr16	55983814	-
5CDS-5UTR	ENST00000328300	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A085-01A	COL4A5	chrX	107683436	+	RGAG1	chrX	109688381	+
5CDS-intron	ENST00000328300	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A085-01A	COL4A5	chrX	107683436	+	RGAG1	chrX	109688381	+
5CDS-5UTR	ENST00000361603	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A085-01A	COL4A5	chrX	107683436	+	RGAG1	chrX	109688381	+
5CDS-intron	ENST00000361603	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A085-01A	COL4A5	chrX	107683436	+	RGAG1	chrX	109688381	+
3UTR-5UTR	ENST00000477429	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A085-01A	COL4A5	chrX	107683436	+	RGAG1	chrX	109688381	+
3UTR-intron	ENST00000477429	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A085-01A	COL4A5	chrX	107683436	+	RGAG1	chrX	109688381	+
intron-5UTR	ENST00000434074	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000434074	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000312040	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000312040	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000451945	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000451945	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000529655	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000529655	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000530500	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000530500	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000526508	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000526508	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000524625	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000524625	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000359513	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000359513	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000528494	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000528494	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000526485	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000526485	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A086-01A	ATG13	chr11	46639925	+	TSPAN18	chr11	44881879	+
Frame-shit	ENST00000458059	ENST00000347528		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000458059	ENST00000289734		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000458059	ENST00000379758		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000458059	ENST00000396942		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000458059	ENST00000396945		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000458059	ENST00000352337		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000458059	ENST00000265709		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000458059	ENST00000457297		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000458059	ENST00000522231		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000458059	ENST00000522543		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000458059	ENST00000314214		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000458059	ENST00000521407		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000347528		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000289734		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000379758		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000396942		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000396945		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000352337		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000427478	ENST00000265709		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000427478	ENST00000457297		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000427478	ENST00000522231		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000427478	ENST00000522543		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000427478	ENST00000314214		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000427478	ENST00000521407		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000347528		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000289734		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000379758		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000396942		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000396945		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000352337		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000562576	ENST00000265709		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000562576	ENST00000457297		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000562576	ENST00000522231		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000562576	ENST00000522543		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000562576	ENST00000314214		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000562576	ENST00000521407		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000347528		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000289734		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000379758		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000396942		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000396945		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000352337		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000565556	ENST00000265709		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000565556	ENST00000457297		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000565556	ENST00000522231		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000565556	ENST00000522543		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000565556	ENST00000314214		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000565556	ENST00000521407		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000347528		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000289734		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000379758		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000396942		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000396945		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000352337		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000567712	ENST00000265709		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-intron	ENST00000567712	ENST00000457297		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-intron	ENST00000567712	ENST00000522231		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-intron	ENST00000567712	ENST00000522543		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-intron	ENST00000567712	ENST00000314214		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
intron-intron	ENST00000567712	ENST00000521407		TCGA	LD	BRCA	TCGA-A8-A086-01A	CNEP1R1	chr16	50060378	+	ANK1	chr8	41615655	-
In-frame	ENST00000540367	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
In-frame	ENST00000540367	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000540367	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000376618	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000376618	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000376618	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000265641	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000265641	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000265641	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
In-frame	ENST00000539743	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
In-frame	ENST00000539743	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000539743	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000537756	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000537756	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000537756	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000538994	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000538994	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000538994	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A086-01A	CPT1A	chr11	68571468	-	GDPD4	chr11	76998465	-
intron-intron	ENST00000351960	ENST00000282091		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
intron-5UTR	ENST00000351960	ENST00000529816		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
5UTR-intron	ENST00000358965	ENST00000282091		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
5UTR-5UTR	ENST00000358965	ENST00000529816		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
5UTR-intron	ENST00000393695	ENST00000282091		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
5UTR-5UTR	ENST00000393695	ENST00000529816		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
5UTR-intron	ENST00000543450	ENST00000282091		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
5UTR-5UTR	ENST00000543450	ENST00000529816		TCGA	LD	BRCA	TCGA-A8-A086-01A	NUMA1	chr11	71791504	-	PTH	chr11	13517720	-
In-frame	ENST00000354190	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000354190	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000354190	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
5CDS-intron	ENST00000354190	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000398492	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000398492	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000398492	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
5CDS-intron	ENST00000398492	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000227214	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000227214	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000227214	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
5CDS-intron	ENST00000227214	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000398494	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000398494	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000398494	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
5CDS-intron	ENST00000398494	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000543085	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000543085	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000543085	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
5CDS-intron	ENST00000543085	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
intron-3CDS	ENST00000544532	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
intron-3CDS	ENST00000544532	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
intron-3CDS	ENST00000544532	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
intron-intron	ENST00000544532	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000535129	ENST00000351960		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000535129	ENST00000358965		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
In-frame	ENST00000535129	ENST00000393695		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
5CDS-intron	ENST00000535129	ENST00000543450		TCGA	LD	BRCA	TCGA-A8-A086-01A	PLEKHB1	chr11	73362935	+	NUMA1	chr11	71735399	-
Frame-shit	ENST00000394303	ENST00000225430		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394303	ENST00000579374		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394303	ENST00000579260		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394303	ENST00000582193		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394310	ENST00000225430		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394310	ENST00000579374		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394310	ENST00000579260		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000394310	ENST00000582193		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000344140	ENST00000225430		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000344140	ENST00000579374		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000344140	ENST00000579260		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
Frame-shit	ENST00000344140	ENST00000582193		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
intron-3CDS	ENST00000582877	ENST00000225430		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
intron-3CDS	ENST00000582877	ENST00000579374		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
intron-3CDS	ENST00000582877	ENST00000579260		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
intron-3CDS	ENST00000582877	ENST00000582193		TCGA	LD	BRCA	TCGA-A8-A08B-01A	CACNB1	chr17	37341037	-	RPL19	chr17	37358570	+
intron-3CDS	ENST00000254066	ENST00000579146		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000254066	ENST00000300658		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000254066	ENST00000378011		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000254066	ENST00000429199		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000394089	ENST00000579146		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000394089	ENST00000300658		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000394089	ENST00000378011		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000394089	ENST00000429199		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000425707	ENST00000579146		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000425707	ENST00000300658		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000425707	ENST00000378011		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000425707	ENST00000429199		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394086	ENST00000579146		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394086	ENST00000300658		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394086	ENST00000378011		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394086	ENST00000429199		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394081	ENST00000579146		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394081	ENST00000300658		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394081	ENST00000378011		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000394081	ENST00000429199		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000420042	ENST00000579146		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000420042	ENST00000300658		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000420042	ENST00000378011		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
intron-3CDS	ENST00000420042	ENST00000429199		TCGA	LD	BRCA	TCGA-A8-A08B-01A	RARA	chr17	38474700	+	PGAP3	chr17	37842272	-
5UTR-3CDS	ENST00000337195	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
5UTR-3CDS	ENST00000337195	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000531469	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000531469	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
5UTR-3CDS	ENST00000494626	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
5UTR-3CDS	ENST00000494626	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000411419	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000411419	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
5UTR-3CDS	ENST00000476817	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
5UTR-3CDS	ENST00000476817	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000309035	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000309035	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000334808	ENST00000378993		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
intron-3CDS	ENST00000334808	ENST00000302196		TCGA	LD	BRCA	TCGA-A8-A08F-01A	CTBP2	chr10	126848888	-	IL1RAPL1	chrX	29935581	+
In-frame	ENST00000579419	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
In-frame	ENST00000579419	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000357896	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000357896	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
In-frame	ENST00000395418	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
In-frame	ENST00000395418	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000585089	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000585089	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
In-frame	ENST00000585313	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
In-frame	ENST00000585313	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000578122	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000578122	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
intron-3CDS	ENST00000578985	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
intron-3CDS	ENST00000578985	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A08F-01A	IFT20	chr17	26656199	-	SUZ12	chr17	30267305	+
Frame-shit	ENST00000261207	ENST00000296597		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000261207	ENST00000511107		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000261207	ENST00000512623		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000450142	ENST00000296597		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000450142	ENST00000511107		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000450142	ENST00000512623		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000437004	ENST00000296597		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000437004	ENST00000511107		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000437004	ENST00000512623		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
In-frame	ENST00000546369	ENST00000296597		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000546369	ENST00000511107		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000546369	ENST00000512623		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000550107	ENST00000296597		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000550107	ENST00000511107		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000550107	ENST00000512623		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP1R12A	chr12	80226112	-	NDUFAF2	chr5	60368952	+
5CDS-5UTR	ENST00000012443	ENST00000340296		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000534253		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000263811		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000397119		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000410079		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000508530		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000409197		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000409317		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000409773		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000409453		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000012443	ENST00000358002		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000340296		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000534253		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000263811		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000397119		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000410079		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000508530		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000409197		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000409317		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000409773		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000409453		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
5CDS-5UTR	ENST00000391919	ENST00000358002		TCGA	LD	BRCA	TCGA-A8-A08F-01A	PPP5C	chr19	46857246	+	DYNC1I2	chr2	172546657	+
Frame-shit	ENST00000241261	ENST00000539261		TCGA	LD	BRCA	TCGA-A8-A08F-01A	TNFSF10	chr3	172241043	-	MGP	chr12	15035214	-
Frame-shit	ENST00000241261	ENST00000228938		TCGA	LD	BRCA	TCGA-A8-A08F-01A	TNFSF10	chr3	172241043	-	MGP	chr12	15035214	-
Frame-shit	ENST00000420541	ENST00000539261		TCGA	LD	BRCA	TCGA-A8-A08F-01A	TNFSF10	chr3	172241043	-	MGP	chr12	15035214	-
Frame-shit	ENST00000420541	ENST00000228938		TCGA	LD	BRCA	TCGA-A8-A08F-01A	TNFSF10	chr3	172241043	-	MGP	chr12	15035214	-
Frame-shit	ENST00000540367	ENST00000265689		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000540367	ENST00000533728		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000540367	ENST00000356135		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
Frame-shit	ENST00000376618	ENST00000265689		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000376618	ENST00000533728		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000376618	ENST00000356135		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
Frame-shit	ENST00000265641	ENST00000265689		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000265641	ENST00000533728		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000265641	ENST00000356135		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
Frame-shit	ENST00000539743	ENST00000265689		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000539743	ENST00000533728		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000539743	ENST00000356135		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
intron-3CDS	ENST00000537756	ENST00000265689		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000537756	ENST00000533728		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000537756	ENST00000356135		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
intron-3CDS	ENST00000538994	ENST00000265689		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000538994	ENST00000533728		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
intron-5UTR	ENST00000538994	ENST00000356135		TCGA	LD	BRCA	TCGA-A8-A08G-01A	CPT1A	chr11	68529003	-	CHKA	chr11	67821514	-
5CDS-intron	ENST00000328194	ENST00000535714		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
5CDS-intron	ENST00000328194	ENST00000378919		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
5CDS-intron	ENST00000530044	ENST00000535714		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
5CDS-intron	ENST00000530044	ENST00000378919		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
intron-intron	ENST00000527700	ENST00000535714		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
intron-intron	ENST00000527700	ENST00000378919		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
intron-intron	ENST00000526523	ENST00000535714		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
intron-intron	ENST00000526523	ENST00000378919		TCGA	LD	BRCA	TCGA-A8-A08G-01A	DENND5A	chr11	9286508	-	PGPEP1L	chr15	99541392	-
Frame-shit	ENST00000379719	ENST00000393700		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
5CDS-3UTR	ENST00000379719	ENST00000412763		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
5CDS-3UTR	ENST00000379719	ENST00000369997		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
5CDS-intron	ENST00000379719	ENST00000462086		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
intron-3CDS	ENST00000533680	ENST00000393700		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
intron-3UTR	ENST00000533680	ENST00000412763		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
intron-3UTR	ENST00000533680	ENST00000369997		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
intron-intron	ENST00000533680	ENST00000462086		TCGA	LD	BRCA	TCGA-A8-A08G-01A	IPO7	chr11	9430186	+	RENBP	chrX	153201029	-
5UTR-3CDS	ENST00000571669	ENST00000254846		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
5UTR-3CDS	ENST00000571669	ENST00000448097		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
5UTR-intron	ENST00000571669	ENST00000572030		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
Frame-shit	ENST00000263092	ENST00000254846		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
Frame-shit	ENST00000263092	ENST00000448097		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
5CDS-intron	ENST00000263092	ENST00000572030		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
Frame-shit	ENST00000538844	ENST00000254846		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
Frame-shit	ENST00000538844	ENST00000448097		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
5CDS-intron	ENST00000538844	ENST00000572030		TCGA	LD	BRCA	TCGA-A8-A08G-01A	METTL16	chr17	2367502	-	KDM6B	chr17	7749190	+
Frame-shit	ENST00000541925	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
Frame-shit	ENST00000542156	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
Frame-shit	ENST00000370390	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
Frame-shit	ENST00000451863	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
Frame-shit	ENST00000544228	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
Frame-shit	ENST00000445323	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
5UTR-3CDS	ENST00000538506	ENST00000370350		TCGA	LD	BRCA	TCGA-A8-A08G-01A	MTMR1	chrX	149887172	+	FATE1	chrX	150889867	+
In-frame	ENST00000256190	ENST00000396986		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
In-frame	ENST00000256190	ENST00000300730		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
Frame-shit	ENST00000256190	ENST00000396993		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
In-frame	ENST00000256190	ENST00000396991		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-3UTR	ENST00000256190	ENST00000532017		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-3UTR	ENST00000256190	ENST00000465307		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-3UTR	ENST00000256190	ENST00000493547		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-3UTR	ENST00000256190	ENST00000278243		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-3UTR	ENST00000256190	ENST00000463452		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-5UTR	ENST00000256190	ENST00000479072		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
5CDS-5UTR	ENST00000256190	ENST00000496834		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3CDS	ENST00000527019	ENST00000396986		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3CDS	ENST00000527019	ENST00000300730		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3CDS	ENST00000527019	ENST00000396993		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3CDS	ENST00000527019	ENST00000396991		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3UTR	ENST00000527019	ENST00000532017		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3UTR	ENST00000527019	ENST00000465307		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3UTR	ENST00000527019	ENST00000493547		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3UTR	ENST00000527019	ENST00000278243		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-3UTR	ENST00000527019	ENST00000463452		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-5UTR	ENST00000527019	ENST00000479072		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
intron-5UTR	ENST00000527019	ENST00000496834		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SBF2	chr11	10011044	-	PGAP2	chr11	3845113	+
Frame-shit	ENST00000254193	ENST00000264555		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
Frame-shit	ENST00000254193	ENST00000413872		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
Frame-shit	ENST00000254193	ENST00000533464		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
Frame-shit	ENST00000254193	ENST00000416188		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
5UTR-3CDS	ENST00000560856	ENST00000264555		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
5UTR-3CDS	ENST00000560856	ENST00000413872		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
5UTR-3CDS	ENST00000560856	ENST00000533464		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
5UTR-3CDS	ENST00000560856	ENST00000416188		TCGA	LD	BRCA	TCGA-A8-A08G-01A	SNRPA1	chr15	101832167	-	PHRF1	chr11	601574	+
In-frame	ENST00000449054	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000449054	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000449054	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000449054	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000449054	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000449054	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000379238	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000379238	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000379238	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000379238	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000379238	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000379238	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000360802	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000360802	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000360802	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000360802	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000360802	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000360802	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
5UTR-3CDS	ENST00000379239	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
5UTR-3CDS	ENST00000379239	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
5UTR-3CDS	ENST00000379239	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
5UTR-3CDS	ENST00000379239	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
5UTR-3CDS	ENST00000379239	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
5UTR-3CDS	ENST00000379239	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000539807	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000539807	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000539807	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000539807	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000539807	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000539807	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000418786	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000418786	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000418786	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000418786	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000418786	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
Frame-shit	ENST00000418786	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379225	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379225	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379225	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379225	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379225	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379225	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379235	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379235	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379235	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379235	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379235	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000379235	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000480885	ENST00000361905		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000480885	ENST00000527636		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000480885	ENST00000527575		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000480885	ENST00000334310		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000480885	ENST00000361985		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
intron-3CDS	ENST00000480885	ENST00000526600		TCGA	LD	BRCA	TCGA-A8-A08G-01A	UBAP2	chr9	33996221	-	TEAD1	chr11	12901255	+
In-frame	ENST00000431975	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000431975	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000431975	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000431975	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000431975	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000431975	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
5CDS-intron	ENST00000431975	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
5CDS-intron	ENST00000431975	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000541650	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000541650	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000541650	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000541650	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000541650	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000541650	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
5CDS-intron	ENST00000541650	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
5CDS-intron	ENST00000541650	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000366358	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000366358	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000366358	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000366358	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000366358	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000366358	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-intron	ENST00000366358	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-intron	ENST00000366358	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000368123	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000368123	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000368123	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000368123	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000368123	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
In-frame	ENST00000368123	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
5CDS-intron	ENST00000368123	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
5CDS-intron	ENST00000368123	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000537868	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000537868	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000537868	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000537868	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000537868	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000537868	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000537868	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000537868	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000263050	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000263050	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000263050	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000263050	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000263050	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000263050	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000263050	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000263050	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000342266	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000342266	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000342266	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000342266	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000342266	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000342266	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000342266	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000342266	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000474850	ENST00000440973		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000474850	ENST00000338799		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000474850	ENST00000456483		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000474850	ENST00000443427		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000474850	ENST00000206249		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-3CDS	ENST00000474850	ENST00000406599		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000474850	ENST00000427531		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
intron-intron	ENST00000474850	ENST00000482101		TCGA	LD	BRCA	TCGA-A8-A08I-01A	AKAP7	chr6	131466556	+	ESR1	chr6	152415520	+
3UTR-3CDS	ENST00000498289	ENST00000370321		TCGA	LD	BRCA	TCGA-A8-A08I-01A	C1orf112	chr1	169768099	+	RPL5	chr1	93303013	+
5UTR-3CDS	ENST00000413811	ENST00000370321		TCGA	LD	BRCA	TCGA-A8-A08I-01A	C1orf112	chr1	169768099	+	RPL5	chr1	93303013	+
5UTR-3CDS	ENST00000359326	ENST00000370321		TCGA	LD	BRCA	TCGA-A8-A08I-01A	C1orf112	chr1	169768099	+	RPL5	chr1	93303013	+
Frame-shit	ENST00000456684	ENST00000370321		TCGA	LD	BRCA	TCGA-A8-A08I-01A	C1orf112	chr1	169768099	+	RPL5	chr1	93303013	+
5UTR-3CDS	ENST00000286031	ENST00000370321		TCGA	LD	BRCA	TCGA-A8-A08I-01A	C1orf112	chr1	169768099	+	RPL5	chr1	93303013	+
Frame-shit	ENST00000540080	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000540080	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000540080	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000540080	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000433436	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000433436	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000433436	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000433436	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000538225	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000538225	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000538225	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000538225	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000345519	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000345519	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000345519	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000345519	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000470744	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000470744	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000470744	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000470744	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000242285	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000242285	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000242285	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000242285	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000466396	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000466396	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000466396	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000466396	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
Frame-shit	ENST00000396603	ENST00000336755		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000396603	ENST00000534928		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000396603	ENST00000461038		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000396603	ENST00000322831		TCGA	LD	BRCA	TCGA-A8-A08I-01A	CLTA	chr9	36204176	+	ZCCHC7	chr9	37302185	+
In-frame	ENST00000316738	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000316738	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-intron	ENST00000316738	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000555872	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000555872	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-intron	ENST00000555872	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
Frame-shit	ENST00000556609	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
Frame-shit	ENST00000556609	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-intron	ENST00000556609	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000267544	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000267544	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-intron	ENST00000267544	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5UTR-3CDS	ENST00000550103	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5UTR-3CDS	ENST00000550103	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5UTR-intron	ENST00000550103	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000538485	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000538485	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-intron	ENST00000538485	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000556005	ENST00000555019		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
In-frame	ENST00000556005	ENST00000315988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-intron	ENST00000556005	ENST00000556337		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EFCAB11	chr14	90397885	-	ASB2	chr14	94420829	-
5CDS-5UTR	ENST00000334976	ENST00000431666		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-intron	ENST00000334976	ENST00000338624		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000334976	ENST00000245615		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000334976	ENST00000391754		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-intron	ENST00000334976	ENST00000474910		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000376918	ENST00000431666		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-intron	ENST00000376918	ENST00000338624		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000376918	ENST00000245615		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000376918	ENST00000391754		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-intron	ENST00000376918	ENST00000474910		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000598585	ENST00000431666		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-intron	ENST00000598585	ENST00000338624		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000598585	ENST00000245615		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-5UTR	ENST00000598585	ENST00000391754		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5CDS-intron	ENST00000598585	ENST00000474910		TCGA	LD	BRCA	TCGA-A8-A08I-01A	EMC10	chr19	50984234	+	MBOAT7	chr19	54692365	-
5UTR-3CDS	ENST00000064778	ENST00000339764		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-intron	ENST00000064778	ENST00000537753		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-intron	ENST00000064778	ENST00000543947		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-3CDS	ENST00000450446	ENST00000339764		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-intron	ENST00000450446	ENST00000537753		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-intron	ENST00000450446	ENST00000543947		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-3CDS	ENST00000356467	ENST00000339764		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-intron	ENST00000356467	ENST00000537753		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
5UTR-intron	ENST00000356467	ENST00000543947		TCGA	LD	BRCA	TCGA-A8-A08I-01A	FAM168A	chr11	73308968	-	DNAJB13	chr11	73669362	+
In-frame	ENST00000335647	ENST00000322088		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
In-frame	ENST00000335647	ENST00000444322		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000335647	ENST00000477989		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000335647	ENST00000462990		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000335647	ENST00000473455		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
Frame-shit	ENST00000335643	ENST00000322088		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
Frame-shit	ENST00000335643	ENST00000444322		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000335643	ENST00000477989		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000335643	ENST00000462990		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000335643	ENST00000473455		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
Frame-shit	ENST00000367411	ENST00000322088		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
Frame-shit	ENST00000367411	ENST00000444322		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000367411	ENST00000477989		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000367411	ENST00000462990		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5CDS-intron	ENST00000367411	ENST00000473455		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5UTR-3CDS	ENST00000494504	ENST00000322088		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5UTR-3CDS	ENST00000494504	ENST00000444322		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5UTR-intron	ENST00000494504	ENST00000477989		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5UTR-intron	ENST00000494504	ENST00000462990		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5UTR-intron	ENST00000494504	ENST00000473455		TCGA	LD	BRCA	TCGA-A8-A08I-01A	KATNA1	chr6	149922730	-	PPP2R1A	chr19	52719782	+
5UTR-5UTR	ENST00000545708	ENST00000406462		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5UTR-5UTR	ENST00000545708	ENST00000264126		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5UTR-5UTR	ENST00000540243	ENST00000406462		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5UTR-5UTR	ENST00000540243	ENST00000264126		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5CDS-5UTR	ENST00000370298	ENST00000406462		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5CDS-5UTR	ENST00000370298	ENST00000264126		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
3UTR-5UTR	ENST00000471953	ENST00000406462		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
3UTR-5UTR	ENST00000471953	ENST00000264126		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5CDS-5UTR	ENST00000370303	ENST00000406462		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
5CDS-5UTR	ENST00000370303	ENST00000264126		TCGA	LD	BRCA	TCGA-A8-A08I-01A	MTF2	chr1	93545088	+	GPSM2	chr1	109427897	+
intron-3UTR	ENST00000259605	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000259605	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000259605	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000259605	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000353739	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000353739	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000353739	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000353739	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000357058	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000357058	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000357058	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000357058	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000350199	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000350199	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000350199	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000350199	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000377885	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000377885	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000377885	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000377885	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377877	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377877	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377877	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377877	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000491349	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000491349	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000491349	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000491349	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	RNF38	chr9	36400551	-	GLIPR2	chr9	36162359	+
5CDS-5UTR	ENST00000343348	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-3UTR	ENST00000343348	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-5UTR	ENST00000343348	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-5UTR	ENST00000257414	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-3UTR	ENST00000257414	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-5UTR	ENST00000257414	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-5UTR	ENST00000510263	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-3UTR	ENST00000510263	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
5CDS-5UTR	ENST00000510263	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000513137	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-3UTR	ENST00000513137	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000513137	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000282394	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-3UTR	ENST00000282394	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000282394	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000503865	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-3UTR	ENST00000503865	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000503865	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000503962	ENST00000296581		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-3UTR	ENST00000503962	ENST00000503982		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-5UTR	ENST00000503962	ENST00000502781		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SEMA6A	chr5	115822445	-	LSM6	chr4	147104064	+
intron-3UTR	ENST00000496760	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000496760	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000496760	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000496760	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000380590	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000380590	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000380590	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000380590	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377716	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377716	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377716	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000377716	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000242275	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000242275	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000242275	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000242275	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	SLC25A51	chr9	37903528	-	GLIPR2	chr9	36162359	+
In-frame	ENST00000377753	ENST00000374690		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377753	ENST00000513847		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377753	ENST00000504326		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377753	ENST00000396044		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377753	ENST00000396043		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
In-frame	ENST00000537911	ENST00000374690		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000537911	ENST00000513847		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000537911	ENST00000504326		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000537911	ENST00000396044		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000537911	ENST00000396043		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
In-frame	ENST00000377754	ENST00000374690		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377754	ENST00000513847		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377754	ENST00000504326		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377754	ENST00000396044		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000377754	ENST00000396043		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
In-frame	ENST00000297994	ENST00000374690		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000297994	ENST00000513847		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000297994	ENST00000504326		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000297994	ENST00000396044		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
5CDS-3UTR	ENST00000297994	ENST00000396043		TCGA	LD	BRCA	TCGA-A8-A08I-01A	TRMT10B	chr9	37776402	+	AR	chrX	66905852	+
Frame-shit	ENST00000367590	ENST00000457880		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
Frame-shit	ENST00000367590	ENST00000370867		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-intron	ENST00000367590	ENST00000421739		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-5UTR	ENST00000367590	ENST00000479111		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-intron	ENST00000367590	ENST00000467646		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
Frame-shit	ENST00000367589	ENST00000457880		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
Frame-shit	ENST00000367589	ENST00000370867		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-intron	ENST00000367589	ENST00000421739		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-5UTR	ENST00000367589	ENST00000479111		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-intron	ENST00000367589	ENST00000467646		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
intron-3CDS	ENST00000467345	ENST00000457880		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
intron-3CDS	ENST00000467345	ENST00000370867		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
intron-intron	ENST00000467345	ENST00000421739		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
intron-5UTR	ENST00000467345	ENST00000479111		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
intron-intron	ENST00000467345	ENST00000467646		TCGA	LD	BRCA	TCGA-A8-A08I-01A	XPR1	chr1	180651547	+	TYW3	chr1	75202226	+
5CDS-3UTR	ENST00000336755	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000336755	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000336755	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000336755	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000534928	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000534928	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000534928	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000534928	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000461038	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000461038	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000461038	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000461038	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000322831	ENST00000396613		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000322831	ENST00000377959		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000322831	ENST00000377960		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000322831	ENST00000474050		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZCCHC7	chr9	37126939	+	GLIPR2	chr9	36162359	+
5CDS-intron	ENST00000601935	ENST00000402988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZNF675	chr19	23869833	-	IGSF23	chr19	45121426	+
5CDS-intron	ENST00000600313	ENST00000402988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZNF675	chr19	23869833	-	IGSF23	chr19	45121426	+
5CDS-intron	ENST00000596211	ENST00000402988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZNF675	chr19	23869833	-	IGSF23	chr19	45121426	+
5CDS-intron	ENST00000359788	ENST00000402988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZNF675	chr19	23869833	-	IGSF23	chr19	45121426	+
5CDS-intron	ENST00000601010	ENST00000402988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZNF675	chr19	23869833	-	IGSF23	chr19	45121426	+
5CDS-intron	ENST00000599168	ENST00000402988		TCGA	LD	BRCA	TCGA-A8-A08I-01A	ZNF675	chr19	23869833	-	IGSF23	chr19	45121426	+
In-frame	ENST00000589222	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000589222	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000407086	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000390652	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000408905	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000588462	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000585744	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000588874	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000262291		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000537567		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000539763		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000536180		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000545362		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-intron	ENST00000585812	ENST00000588617		TCGA	LD	BRCA	TCGA-A8-A08J-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000393408	ENST00000251241		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
intron-5UTR	ENST00000393408	ENST00000451169		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
intron-5UTR	ENST00000393408	ENST00000425628		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5UTR-3CDS	ENST00000225603	ENST00000251241		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5UTR-5UTR	ENST00000225603	ENST00000451169		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5UTR-5UTR	ENST00000225603	ENST00000425628		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5UTR-3CDS	ENST00000495350	ENST00000251241		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5UTR-5UTR	ENST00000495350	ENST00000451169		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5UTR-5UTR	ENST00000495350	ENST00000425628		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CBX1	chr17	46178630	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000392347	ENST00000453134		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392347	ENST00000583458		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000392347	ENST00000415831		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000392347	ENST00000582043		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392347	ENST00000580155		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392347	ENST00000584778		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000392347	ENST00000578887		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000389641	ENST00000453134		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000389641	ENST00000583458		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000389641	ENST00000415831		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000389641	ENST00000582043		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000389641	ENST00000580155		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000389641	ENST00000584778		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000389641	ENST00000578887		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392346	ENST00000453134		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392346	ENST00000583458		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000392346	ENST00000415831		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000392346	ENST00000582043		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392346	ENST00000580155		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000392346	ENST00000584778		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000392346	ENST00000578887		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000327026	ENST00000453134		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000327026	ENST00000583458		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000327026	ENST00000415831		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000327026	ENST00000582043		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000327026	ENST00000580155		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000327026	ENST00000584778		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000327026	ENST00000578887		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000392343	ENST00000453134		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000392343	ENST00000583458		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000392343	ENST00000415831		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000392343	ENST00000582043		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000392343	ENST00000580155		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-5UTR	ENST00000392343	ENST00000584778		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000392343	ENST00000578887		TCGA	LD	BRCA	TCGA-A8-A08J-01A	CCDC57	chr17	80085568	-	RBFOX3	chr17	77478680	-
intron-intron	ENST00000503238	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000503238	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000503238	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000358350	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000358350	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000358350	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000537810	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000537810	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000537810	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000264319	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000264319	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000264319	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000507711	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000507711	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
5UTR-intron	ENST00000507711	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000514783	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000514783	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000514783	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000507873	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000507873	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000507873	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000506685	ENST00000306888		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000506685	ENST00000263925		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-intron	ENST00000506685	ENST00000504605		TCGA	LD	BRCA	TCGA-A8-A08J-01A	FRYL	chr4	48712536	-	LNX1	chr4	54562306	-
intron-3CDS	ENST00000439730	ENST00000333942		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000439730	ENST00000358365		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000439730	ENST00000583994		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000439730	ENST00000545287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000439730	ENST00000354266		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000439730	ENST00000394692		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000439730	ENST00000581094		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-intron	ENST00000439730	ENST00000580976		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000333942		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000358365		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000583994		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000545287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000354266		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000394692		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000576910	ENST00000581094		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-intron	ENST00000576910	ENST00000580976		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000333942		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000358365		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000583994		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000545287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000354266		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000394692		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000393456	ENST00000581094		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-intron	ENST00000393456	ENST00000580976		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000333942		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000358365		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000583994		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000545287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000354266		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000394692		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000415811	ENST00000581094		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-intron	ENST00000415811	ENST00000580976		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000333942		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000358365		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000583994		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000545287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000354266		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000394692		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000575949	ENST00000581094		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-intron	ENST00000575949	ENST00000580976		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000333942		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000358365		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000583994		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000545287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000354266		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000394692		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-3CDS	ENST00000225567	ENST00000581094		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
intron-intron	ENST00000225567	ENST00000580976		TCGA	LD	BRCA	TCGA-A8-A08J-01A	GOSR2	chr17	45026713	+	RHOT1	chr17	30527975	+
Frame-shit	ENST00000394287	ENST00000398238		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MED1	chr17	37604051	-	NSF	chr17	44751780	+
Frame-shit	ENST00000394287	ENST00000225282		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MED1	chr17	37604051	-	NSF	chr17	44751780	+
Frame-shit	ENST00000394287	ENST00000575068		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MED1	chr17	37604051	-	NSF	chr17	44751780	+
Frame-shit	ENST00000300651	ENST00000398238		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MED1	chr17	37604051	-	NSF	chr17	44751780	+
Frame-shit	ENST00000300651	ENST00000225282		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MED1	chr17	37604051	-	NSF	chr17	44751780	+
Frame-shit	ENST00000300651	ENST00000575068		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MED1	chr17	37604051	-	NSF	chr17	44751780	+
In-frame	ENST00000310614	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000310614	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000310614	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000535529	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000535529	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000411840	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000411840	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-3CDS	ENST00000398483	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5UTR-intron	ENST00000398483	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
In-frame	ENST00000542303	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
5CDS-intron	ENST00000542303	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000532982		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000314282	ENST00000227451		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-intron	ENST00000314282	ENST00000531902		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MRPL48	chr11	73536841	+	DTX4	chr11	58972149	+
intron-3CDS	ENST00000550697	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000550697	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000550697	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000550697	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548580	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548580	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548580	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000548580	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000293422	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000293422	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000293422	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000293422	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000348108	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000348108	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000348108	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000348108	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000549017	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000549017	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000549017	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000549017	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000549566	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000549566	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000549566	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000549566	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000536128	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000536128	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000536128	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000536128	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000547649	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000547649	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000547649	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000547649	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
Frame-shit	ENST00000547408	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
Frame-shit	ENST00000547408	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
Frame-shit	ENST00000547408	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
5CDS-3UTR	ENST00000547408	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000551589	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000551589	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000551589	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000551589	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548400	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548400	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548400	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000548400	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548293	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548293	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3CDS	ENST00000548293	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
intron-3UTR	ENST00000548293	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
3UTR-3CDS	ENST00000551954	ENST00000331886		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
3UTR-3CDS	ENST00000551954	ENST00000394147		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
3UTR-3CDS	ENST00000551954	ENST00000551156		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
3UTR-3UTR	ENST00000551954	ENST00000549079		TCGA	LD	BRCA	TCGA-A8-A08J-01A	MYL6	chr12	56556795	+	DGKA	chr12	56345872	+
Frame-shit	ENST00000268712	ENST00000395824		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
In-frame	ENST00000268712	ENST00000395825		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
5CDS-intron	ENST00000268712	ENST00000461555		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
In-frame	ENST00000395851	ENST00000395824		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
Frame-shit	ENST00000395851	ENST00000395825		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
5CDS-intron	ENST00000395851	ENST00000461555		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-3CDS	ENST00000395857	ENST00000395824		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-3CDS	ENST00000395857	ENST00000395825		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-intron	ENST00000395857	ENST00000461555		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-3CDS	ENST00000395848	ENST00000395824		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-3CDS	ENST00000395848	ENST00000395825		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-intron	ENST00000395848	ENST00000461555		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-3CDS	ENST00000583226	ENST00000395824		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-3CDS	ENST00000583226	ENST00000395825		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
intron-intron	ENST00000583226	ENST00000461555		TCGA	LD	BRCA	TCGA-A8-A08J-01A	NCOR1	chr17	16089868	-	ZNF287	chr17	16456740	-
Frame-shit	ENST00000262764	ENST00000261789		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000262764	ENST00000528669		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000262764	ENST00000556387		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000262764	ENST00000530611		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000262764	ENST00000524835		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000262764	ENST00000396854		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000329897	ENST00000261789		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000329897	ENST00000528669		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000329897	ENST00000556387		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000329897	ENST00000530611		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000329897	ENST00000524835		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
Frame-shit	ENST00000329897	ENST00000396854		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
3UTR-3CDS	ENST00000588281	ENST00000261789		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
3UTR-3CDS	ENST00000588281	ENST00000528669		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
3UTR-3CDS	ENST00000588281	ENST00000556387		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
3UTR-3CDS	ENST00000588281	ENST00000530611		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
3UTR-3CDS	ENST00000588281	ENST00000524835		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
3UTR-3CDS	ENST00000588281	ENST00000396854		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PGS1	chr17	76396936	+	TM9SF1	chr14	24662475	-
In-frame	ENST00000580974	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000580974	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000580974	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000580974	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000580974	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000580974	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000299954	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000299954	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000299954	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000299954	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000299954	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000299954	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000335257	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000335257	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000335257	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000335257	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000335257	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000335257	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000581322	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000581322	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000581322	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000581322	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
In-frame	ENST00000581322	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000581322	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PITPNC1	chr17	65628354	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000413366	ENST00000300408		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PRKCA	chr17	64302245	+	PHB	chr17	47490653	-
5CDS-5UTR	ENST00000413366	ENST00000511832		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PRKCA	chr17	64302245	+	PHB	chr17	47490653	-
5CDS-intron	ENST00000413366	ENST00000508009		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PRKCA	chr17	64302245	+	PHB	chr17	47490653	-
3UTR-5UTR	ENST00000583361	ENST00000300408		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PRKCA	chr17	64302245	+	PHB	chr17	47490653	-
3UTR-5UTR	ENST00000583361	ENST00000511832		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PRKCA	chr17	64302245	+	PHB	chr17	47490653	-
3UTR-intron	ENST00000583361	ENST00000508009		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PRKCA	chr17	64302245	+	PHB	chr17	47490653	-
5CDS-5UTR	ENST00000261712	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000261712	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000261712	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000261712	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000261712	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000261712	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000457654	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000457654	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000457654	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000457654	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000457654	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000457654	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PSMD11	chr17	30774064	+	CEP112	chr17	64179425	-
5UTR-3CDS	ENST00000393038	ENST00000269051		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000393038	ENST00000538145		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000393038	ENST00000536287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000537860	ENST00000269051		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000537860	ENST00000538145		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000537860	ENST00000536287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000409433	ENST00000269051		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000409433	ENST00000538145		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000409433	ENST00000536287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
intron-3CDS	ENST00000470557	ENST00000269051		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
intron-3CDS	ENST00000470557	ENST00000538145		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
intron-3CDS	ENST00000470557	ENST00000536287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000579915	ENST00000269051		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000579915	ENST00000538145		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
5UTR-3CDS	ENST00000579915	ENST00000536287		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PTRH2	chr17	57784732	-	RHBDL3	chr17	30621313	+
Frame-shit	ENST00000443358	ENST00000344330		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000443358	ENST00000407780		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000443358	ENST00000400379		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000443358	ENST00000400377		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000376649	ENST00000344330		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000376649	ENST00000407780		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000376649	ENST00000400379		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000376649	ENST00000400377		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000440818	ENST00000344330		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000440818	ENST00000407780		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000440818	ENST00000400379		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000440818	ENST00000400377		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000542167	ENST00000344330		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000542167	ENST00000407780		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000542167	ENST00000400379		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000542167	ENST00000400377		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000535067	ENST00000344330		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000535067	ENST00000407780		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000535067	ENST00000400379		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
Frame-shit	ENST00000535067	ENST00000400377		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PUS1	chr12	132416857	+	ICOSLG	chr21	45658371	-
In-frame	ENST00000291576	ENST00000261674		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PWP2	chr21	45537844	+	SFSWAP	chr12	132271008	+
In-frame	ENST00000291576	ENST00000541286		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PWP2	chr21	45537844	+	SFSWAP	chr12	132271008	+
5CDS-3UTR	ENST00000291576	ENST00000539506		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PWP2	chr21	45537844	+	SFSWAP	chr12	132271008	+
intron-3CDS	ENST00000494310	ENST00000261674		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PWP2	chr21	45537844	+	SFSWAP	chr12	132271008	+
intron-3CDS	ENST00000494310	ENST00000541286		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PWP2	chr21	45537844	+	SFSWAP	chr12	132271008	+
intron-3UTR	ENST00000494310	ENST00000539506		TCGA	LD	BRCA	TCGA-A8-A08J-01A	PWP2	chr21	45537844	+	SFSWAP	chr12	132271008	+
5CDS-5UTR	ENST00000367602	ENST00000338586		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000338515		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000367171		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000367169		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000539706		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000339876		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000367170		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000360049		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000367172		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000403080		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000404076		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367602	ENST00000401399		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000367602	ENST00000404907		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000367602	ENST00000513543		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000367602	ENST00000495396		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000338586		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000338515		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000367171		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000367169		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000539706		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000339876		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000367170		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000360049		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000367172		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000403080		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000404076		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-5UTR	ENST00000367600	ENST00000401399		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000367600	ENST00000404907		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000367600	ENST00000513543		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000367600	ENST00000495396		TCGA	LD	BRCA	TCGA-A8-A08J-01A	QSOX1	chr1	180135726	+	NFASC	chr1	204889760	+
5CDS-intron	ENST00000262879	ENST00000202028		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000262879	ENST00000373950		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000262879	ENST00000441639		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000262879	ENST00000373946		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000262879	ENST00000338074		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000262879	ENST00000373941		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000262879	ENST00000479336		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397042	ENST00000202028		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397042	ENST00000373950		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397042	ENST00000441639		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397042	ENST00000373946		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000397042	ENST00000338074		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000397042	ENST00000373941		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397042	ENST00000479336		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397038	ENST00000202028		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397038	ENST00000373950		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397038	ENST00000441639		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397038	ENST00000373946		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000397038	ENST00000338074		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000397038	ENST00000373941		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397038	ENST00000479336		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000537204	ENST00000202028		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000537204	ENST00000373950		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000537204	ENST00000441639		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000537204	ENST00000373946		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000537204	ENST00000338074		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000537204	ENST00000373941		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000537204	ENST00000479336		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397040	ENST00000202028		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397040	ENST00000373950		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397040	ENST00000441639		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397040	ENST00000373946		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000397040	ENST00000338074		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-5UTR	ENST00000397040	ENST00000373941		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
5CDS-intron	ENST00000397040	ENST00000479336		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000490114	ENST00000202028		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000490114	ENST00000373950		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000490114	ENST00000441639		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000490114	ENST00000373946		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000490114	ENST00000338074		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000490114	ENST00000373941		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000490114	ENST00000479336		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RALGAPB	chr20	37146643	+	EPB41L1	chr20	34761686	+
intron-3CDS	ENST00000505618	ENST00000261435		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RHOH	chr4	40198920	+	N4BP2	chr4	40144344	+
5UTR-3CDS	ENST00000381799	ENST00000261435		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RHOH	chr4	40198920	+	N4BP2	chr4	40144344	+
3UTR-3CDS	ENST00000514143	ENST00000261435		TCGA	LD	BRCA	TCGA-A8-A08J-01A	RHOH	chr4	40198920	+	N4BP2	chr4	40144344	+
Frame-shit	ENST00000424834	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000424834	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000424834	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000424834	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000424834	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000382108	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000382108	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000382108	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000382108	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000382108	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000382095	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000382095	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000382095	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000382095	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000382095	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
intron-3CDS	ENST00000474317	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
intron-3CDS	ENST00000474317	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
intron-3UTR	ENST00000474317	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
intron-3UTR	ENST00000474317	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
intron-3UTR	ENST00000474317	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000399949	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000399949	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000399949	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000399949	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000399949	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000409126	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000409126	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000409126	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000409126	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000409126	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000343003	ENST00000426496		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
Frame-shit	ENST00000343003	ENST00000392078		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000343003	ENST00000476522		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000343003	ENST00000367742		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
5CDS-3UTR	ENST00000343003	ENST00000338920		TCGA	LD	BRCA	TCGA-A8-A08J-01A	SPATA13	chr13	24874613	+	PRRC2C	chr1	171493960	+
In-frame	ENST00000396981	ENST00000355530		TCGA	LD	BRCA	TCGA-A8-A08J-01A	UBE2G1	chr17	4269566	-	SPNS3	chr17	4381867	+
In-frame	ENST00000396981	ENST00000333476		TCGA	LD	BRCA	TCGA-A8-A08J-01A	UBE2G1	chr17	4269566	-	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000396981	ENST00000576069		TCGA	LD	BRCA	TCGA-A8-A08J-01A	UBE2G1	chr17	4269566	-	SPNS3	chr17	4381867	+
5UTR-3CDS	ENST00000572484	ENST00000355530		TCGA	LD	BRCA	TCGA-A8-A08J-01A	UBE2G1	chr17	4269566	-	SPNS3	chr17	4381867	+
5UTR-3CDS	ENST00000572484	ENST00000333476		TCGA	LD	BRCA	TCGA-A8-A08J-01A	UBE2G1	chr17	4269566	-	SPNS3	chr17	4381867	+
5UTR-intron	ENST00000572484	ENST00000576069		TCGA	LD	BRCA	TCGA-A8-A08J-01A	UBE2G1	chr17	4269566	-	SPNS3	chr17	4381867	+
In-frame	ENST00000300896	ENST00000356126		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
In-frame	ENST00000300896	ENST00000357146		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
5CDS-5UTR	ENST00000300896	ENST00000581618		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-3CDS	ENST00000592339	ENST00000356126		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-3CDS	ENST00000592339	ENST00000357146		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-5UTR	ENST00000592339	ENST00000581618		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
In-frame	ENST00000393003	ENST00000356126		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
In-frame	ENST00000393003	ENST00000357146		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
5CDS-5UTR	ENST00000393003	ENST00000581618		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-3CDS	ENST00000586881	ENST00000356126		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-3CDS	ENST00000586881	ENST00000357146		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-5UTR	ENST00000586881	ENST00000581618		TCGA	LD	BRCA	TCGA-A8-A08J-01A	USP32	chr17	58469243	-	PSMD12	chr17	65346452	-
intron-5UTR	ENST00000471642	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-5UTR	ENST00000471642	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-5UTR	ENST00000471642	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-intron	ENST00000471642	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-intron	ENST00000471642	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-intron	ENST00000471642	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000368336	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000368336	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000368336	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000368336	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000368336	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000368336	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000343043	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000343043	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000343043	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000343043	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000343043	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000343043	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
3UTR-5UTR	ENST00000496863	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
3UTR-5UTR	ENST00000496863	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
3UTR-5UTR	ENST00000496863	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
3UTR-intron	ENST00000496863	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
3UTR-intron	ENST00000496863	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
3UTR-intron	ENST00000496863	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-5UTR	ENST00000535183	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-5UTR	ENST00000535183	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-5UTR	ENST00000535183	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-intron	ENST00000535183	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-intron	ENST00000535183	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-intron	ENST00000535183	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000421487	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000421487	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000421487	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000421487	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000421487	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000421487	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000465375	ENST00000366987		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000465375	ENST00000341491		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-5UTR	ENST00000465375	ENST00000366985		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000465375	ENST00000492118		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000465375	ENST00000336937		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
5CDS-intron	ENST00000465375	ENST00000366983		TCGA	LD	BRCA	TCGA-A8-A08L-01A	DAP3	chr1	155686919	+	ATF3	chr1	212788360	+
intron-3CDS	ENST00000606872	ENST00000181796		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000378470		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000468747		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000378467		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000378465		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000378458		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000478076		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000378462		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000496330		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-3CDS	ENST00000606872	ENST00000479731		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
intron-intron	ENST00000606872	ENST00000471815		TCGA	LD	BRCA	TCGA-A8-A08L-01A	WASH5P	chr19	66346	-	FAM107B	chr10	14564018	-
In-frame	ENST00000336665	ENST00000263461		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
5CDS-3UTR	ENST00000336665	ENST00000604509		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
In-frame	ENST00000304032	ENST00000263461		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
5CDS-3UTR	ENST00000304032	ENST00000604509		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
intron-3CDS	ENST00000409538	ENST00000263461		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
intron-3UTR	ENST00000409538	ENST00000604509		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
intron-3CDS	ENST00000428334	ENST00000263461		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
intron-3UTR	ENST00000428334	ENST00000604509		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
In-frame	ENST00000409457	ENST00000263461		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
5CDS-3UTR	ENST00000409457	ENST00000604509		TCGA	LD	BRCA	TCGA-A8-A08O-01A	AGAP1	chr2	236403493	+	WDR11	chr10	122659541	+
In-frame	ENST00000280333	ENST00000398023		TCGA	LD	BRCA	TCGA-A8-A08O-01A	DOCK1	chr10	129142010	+	NPS	chr10	129347753	+
3UTR-3CDS	ENST00000484400	ENST00000398023		TCGA	LD	BRCA	TCGA-A8-A08O-01A	DOCK1	chr10	129142010	+	NPS	chr10	129347753	+
Frame-shit	ENST00000335255	ENST00000354329		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
5CDS-5UTR	ENST00000335255	ENST00000529578		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
5CDS-5UTR	ENST00000335255	ENST00000533112		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
5CDS-5UTR	ENST00000335255	ENST00000531253		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
5CDS-5UTR	ENST00000335255	ENST00000527372		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
intron-3CDS	ENST00000529652	ENST00000354329		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000529652	ENST00000529578		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000529652	ENST00000533112		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000529652	ENST00000531253		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000529652	ENST00000527372		TCGA	LD	BRCA	TCGA-A8-A08O-01A	FOXK2	chr17	80545148	+	MYO18A	chr17	27409456	-
Frame-shit	ENST00000579662	ENST00000390006		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000579662	ENST00000309794		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000579662	ENST00000345415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000579662	ENST00000457415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-5UTR	ENST00000579662	ENST00000412079		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-3UTR	ENST00000579662	ENST00000581743		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000339591	ENST00000390006		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000339591	ENST00000309794		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000339591	ENST00000345415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000339591	ENST00000457415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-5UTR	ENST00000339591	ENST00000412079		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-3UTR	ENST00000339591	ENST00000581743		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000200181	ENST00000390006		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000200181	ENST00000309794		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000200181	ENST00000345415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000200181	ENST00000457415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-5UTR	ENST00000200181	ENST00000412079		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-3UTR	ENST00000200181	ENST00000581743		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000450894	ENST00000390006		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000450894	ENST00000309794		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000450894	ENST00000345415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000450894	ENST00000457415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-5UTR	ENST00000450894	ENST00000412079		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-3UTR	ENST00000450894	ENST00000581743		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000449880	ENST00000390006		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000449880	ENST00000309794		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000449880	ENST00000345415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
Frame-shit	ENST00000449880	ENST00000457415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-5UTR	ENST00000449880	ENST00000412079		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
5CDS-3UTR	ENST00000449880	ENST00000581743		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
intron-3CDS	ENST00000584558	ENST00000390006		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
intron-3CDS	ENST00000584558	ENST00000309794		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
intron-3CDS	ENST00000584558	ENST00000345415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
intron-3CDS	ENST00000584558	ENST00000457415		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
intron-5UTR	ENST00000584558	ENST00000412079		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
intron-3UTR	ENST00000584558	ENST00000581743		TCGA	LD	BRCA	TCGA-A8-A08O-01A	ITGB4	chr17	73753188	+	NARF	chr17	80426640	+
In-frame	ENST00000262065	ENST00000413366		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MMD	chr17	53499031	-	PRKCA	chr17	64728806	+
5CDS-intron	ENST00000262065	ENST00000583361		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MMD	chr17	53499031	-	PRKCA	chr17	64728806	+
5UTR-3CDS	ENST00000577038	ENST00000413366		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MMD	chr17	53499031	-	PRKCA	chr17	64728806	+
5UTR-intron	ENST00000577038	ENST00000583361		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MMD	chr17	53499031	-	PRKCA	chr17	64728806	+
Frame-shit	ENST00000333676	ENST00000300896		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MRPL12	chr17	79671746	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000333676	ENST00000592339		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MRPL12	chr17	79671746	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000333676	ENST00000393003		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MRPL12	chr17	79671746	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000333676	ENST00000586881		TCGA	LD	BRCA	TCGA-A8-A08O-01A	MRPL12	chr17	79671746	+	USP32	chr17	58422969	-
intron-3CDS	ENST00000581865	ENST00000247020		TCGA	LD	BRCA	TCGA-A8-A08O-01A	YPEL2	chr17	57430887	+	SDF2	chr17	26982501	-
intron-5UTR	ENST00000581865	ENST00000592250		TCGA	LD	BRCA	TCGA-A8-A08O-01A	YPEL2	chr17	57430887	+	SDF2	chr17	26982501	-
Frame-shit	ENST00000312655	ENST00000247020		TCGA	LD	BRCA	TCGA-A8-A08O-01A	YPEL2	chr17	57430887	+	SDF2	chr17	26982501	-
5CDS-5UTR	ENST00000312655	ENST00000592250		TCGA	LD	BRCA	TCGA-A8-A08O-01A	YPEL2	chr17	57430887	+	SDF2	chr17	26982501	-
Frame-shit	ENST00000585166	ENST00000247020		TCGA	LD	BRCA	TCGA-A8-A08O-01A	YPEL2	chr17	57430887	+	SDF2	chr17	26982501	-
5CDS-5UTR	ENST00000585166	ENST00000592250		TCGA	LD	BRCA	TCGA-A8-A08O-01A	YPEL2	chr17	57430887	+	SDF2	chr17	26982501	-
5CDS-5UTR	ENST00000259727	ENST00000396113		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
5CDS-5UTR	ENST00000259727	ENST00000286687		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
5CDS-5UTR	ENST00000259727	ENST00000396111		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
5CDS-intron	ENST00000259727	ENST00000521840		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
5CDS-intron	ENST00000259727	ENST00000542894		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
5CDS-intron	ENST00000259727	ENST00000396124		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000544145	ENST00000396113		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000544145	ENST00000286687		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
intron-5UTR	ENST00000544145	ENST00000396111		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000544145	ENST00000521840		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000544145	ENST00000542894		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
intron-intron	ENST00000544145	ENST00000396124		TCGA	LD	BRCA	TCGA-A8-A08P-01A	GMPR	chr6	16254966	+	NDUFAF6	chr8	96044223	+
5CDS-3UTR	ENST00000604567	ENST00000449592		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-intron	ENST00000604567	ENST00000540377		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-intron	ENST00000604567	ENST00000538055		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-3UTR	ENST00000542440	ENST00000449592		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-intron	ENST00000542440	ENST00000540377		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-intron	ENST00000542440	ENST00000538055		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-3UTR	ENST00000267197	ENST00000449592		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-intron	ENST00000267197	ENST00000540377		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
5CDS-intron	ENST00000267197	ENST00000538055		TCGA	LD	BRCA	TCGA-A8-A08P-01A	SETD1B	chr12	122257396	+	TMEM120B	chr12	122214275	+
Frame-shit	ENST00000396981	ENST00000293778		TCGA	LD	BRCA	TCGA-A8-A08P-01A	UBE2G1	chr17	4269566	-	CXCL16	chr17	4638803	-
5CDS-5UTR	ENST00000396981	ENST00000576153		TCGA	LD	BRCA	TCGA-A8-A08P-01A	UBE2G1	chr17	4269566	-	CXCL16	chr17	4638803	-
5CDS-5UTR	ENST00000396981	ENST00000574412		TCGA	LD	BRCA	TCGA-A8-A08P-01A	UBE2G1	chr17	4269566	-	CXCL16	chr17	4638803	-
5UTR-3CDS	ENST00000572484	ENST00000293778		TCGA	LD	BRCA	TCGA-A8-A08P-01A	UBE2G1	chr17	4269566	-	CXCL16	chr17	4638803	-
5UTR-5UTR	ENST00000572484	ENST00000576153		TCGA	LD	BRCA	TCGA-A8-A08P-01A	UBE2G1	chr17	4269566	-	CXCL16	chr17	4638803	-
5UTR-5UTR	ENST00000572484	ENST00000574412		TCGA	LD	BRCA	TCGA-A8-A08P-01A	UBE2G1	chr17	4269566	-	CXCL16	chr17	4638803	-
Frame-shit	ENST00000334982	ENST00000255006		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5CDS-intron	ENST00000334982	ENST00000440354		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5CDS-intron	ENST00000334982	ENST00000484638		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
3UTR-3CDS	ENST00000484480	ENST00000255006		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
3UTR-intron	ENST00000484480	ENST00000440354		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
3UTR-intron	ENST00000484480	ENST00000484638		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
Frame-shit	ENST00000310450	ENST00000255006		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5CDS-intron	ENST00000310450	ENST00000440354		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5CDS-intron	ENST00000310450	ENST00000484638		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5UTR-3CDS	ENST00000398602	ENST00000255006		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5UTR-intron	ENST00000398602	ENST00000440354		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5UTR-intron	ENST00000398602	ENST00000484638		TCGA	LD	BRCA	TCGA-A8-A08R-01A	NAA20	chr20	19998093	+	RIN2	chr20	19945596	+
5CDS-5UTR	ENST00000424085	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000257075	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000373747	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000426105	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000440538	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000373741	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000423018	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5CDS-5UTR	ENST00000373742	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
5UTR-5UTR	ENST00000490546	ENST00000422060		TCGA	LD	BRCA	TCGA-A8-A08R-01A	PUM1	chr1	31447498	-	ZNF890P	chr7	5167374	-
In-frame	ENST00000421564	ENST00000266069		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
5CDS-intron	ENST00000421564	ENST00000497101		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
In-frame	ENST00000331758	ENST00000266069		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
5CDS-intron	ENST00000331758	ENST00000497101		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
In-frame	ENST00000370848	ENST00000266069		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
5CDS-intron	ENST00000370848	ENST00000497101		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
intron-3CDS	ENST00000491916	ENST00000266069		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
intron-intron	ENST00000491916	ENST00000497101		TCGA	LD	BRCA	TCGA-A8-A08R-01A	SS18L1	chr20	60735017	+	GID8	chr20	61574847	+
5CDS-intron	ENST00000261712	ENST00000430627		TCGA	LD	BRCA	TCGA-A8-A08S-01A	PSMD11	chr17	30774064	+	CDK12	chr17	37707291	+
5CDS-intron	ENST00000261712	ENST00000447079		TCGA	LD	BRCA	TCGA-A8-A08S-01A	PSMD11	chr17	30774064	+	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000261712	ENST00000559545		TCGA	LD	BRCA	TCGA-A8-A08S-01A	PSMD11	chr17	30774064	+	CDK12	chr17	37707291	+
5CDS-intron	ENST00000457654	ENST00000430627		TCGA	LD	BRCA	TCGA-A8-A08S-01A	PSMD11	chr17	30774064	+	CDK12	chr17	37707291	+
5CDS-intron	ENST00000457654	ENST00000447079		TCGA	LD	BRCA	TCGA-A8-A08S-01A	PSMD11	chr17	30774064	+	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000457654	ENST00000559545		TCGA	LD	BRCA	TCGA-A8-A08S-01A	PSMD11	chr17	30774064	+	CDK12	chr17	37707291	+
5UTR-5UTR	ENST00000315249	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000580569	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000268850	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000378516	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
5UTR-5UTR	ENST00000584655	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000394597	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
5UTR-5UTR	ENST00000447669	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000415395	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000413582	ENST00000246672		TCGA	LD	BRCA	TCGA-A8-A08S-01A	RFFL	chr17	33416124	-	NR1D1	chr17	38256519	-
Frame-shit	ENST00000336273	ENST00000297423		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
Frame-shit	ENST00000336273	ENST00000518074		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
Frame-shit	ENST00000336273	ENST00000541342		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-3UTR	ENST00000336273	ENST00000521214		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-5UTR	ENST00000336273	ENST00000517693		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-intron	ENST00000336273	ENST00000518060		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
Frame-shit	ENST00000519934	ENST00000297423		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
Frame-shit	ENST00000519934	ENST00000518074		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
Frame-shit	ENST00000519934	ENST00000541342		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-3UTR	ENST00000519934	ENST00000521214		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-5UTR	ENST00000519934	ENST00000517693		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-intron	ENST00000519934	ENST00000518060		TCGA	LD	BRCA	TCGA-A8-A08T-01A	MTDH	chr8	98731417	+	SPIDR	chr8	48586363	+
5CDS-5UTR	ENST00000262325	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000262325	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000262325	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000262325	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000592545	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000592545	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000592545	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000592545	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000538556	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000538556	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000538556	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000538556	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000312678	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000312678	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000312678	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000312678	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000589344	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000589344	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000589344	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000589344	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000537622	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000537622	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000537622	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000537622	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-5UTR	ENST00000545922	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-5UTR	ENST00000545922	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-5UTR	ENST00000545922	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000545922	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	AP2B1	chr17	33968994	+	ERBB2	chr17	37844949	+
5UTR-3CDS	ENST00000303407	ENST00000388747		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
5UTR-5UTR	ENST00000303407	ENST00000300432		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
5UTR-5UTR	ENST00000303407	ENST00000490773		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
intron-3CDS	ENST00000473349	ENST00000388747		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
intron-5UTR	ENST00000473349	ENST00000300432		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
intron-5UTR	ENST00000473349	ENST00000490773		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
intron-3CDS	ENST00000371834	ENST00000388747		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
intron-5UTR	ENST00000371834	ENST00000300432		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
intron-5UTR	ENST00000371834	ENST00000490773		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
5UTR-3CDS	ENST00000357885	ENST00000388747		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
5UTR-5UTR	ENST00000357885	ENST00000300432		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
5UTR-5UTR	ENST00000357885	ENST00000490773		TCGA	LD	BRCA	TCGA-A8-A08X-01A	BRD3	chr9	136933067	-	PIP5KL1	chr9	130689610	-
5CDS-5UTR	ENST00000373511	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000373511	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000373511	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000373511	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000373511	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000373498	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000373498	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000373498	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000373498	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000373498	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000350766	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000350766	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000350766	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000350766	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000350766	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-5UTR	ENST00000373503	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-5UTR	ENST00000373503	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000373503	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000373503	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000373503	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-5UTR	ENST00000394063	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-5UTR	ENST00000394063	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000394063	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000394063	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000394063	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000265960	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000265960	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000265960	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000265960	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000265960	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-5UTR	ENST00000373497	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-5UTR	ENST00000373497	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000373497	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000373497	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5UTR-intron	ENST00000373497	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000394060	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000394060	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000394060	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000394060	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000394060	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
intron-5UTR	ENST00000483937	ENST00000405995		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
intron-5UTR	ENST00000483937	ENST00000357304		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
intron-intron	ENST00000483937	ENST00000458550		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
intron-intron	ENST00000483937	ENST00000372249		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
intron-intron	ENST00000483937	ENST00000465931		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	PRRC2B	chr9	134305477	+
Frame-shit	ENST00000373511	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000373511	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000373511	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000373511	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
In-frame	ENST00000373498	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
In-frame	ENST00000373498	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
In-frame	ENST00000373498	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000373498	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000350766	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000350766	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000350766	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000350766	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000373503	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000373503	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000373503	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-5UTR	ENST00000373503	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000394063	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000394063	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000394063	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-5UTR	ENST00000394063	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000265960	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000265960	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000265960	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000265960	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000373497	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000373497	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-3CDS	ENST00000373497	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5UTR-5UTR	ENST00000373497	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000394060	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000394060	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000394060	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000394060	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
intron-3CDS	ENST00000483937	ENST00000406606		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
intron-3CDS	ENST00000483937	ENST00000371850		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
intron-3CDS	ENST00000483937	ENST00000371851		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
intron-5UTR	ENST00000483937	ENST00000486113		TCGA	LD	BRCA	TCGA-A8-A08X-01A	MAPKAP1	chr9	128419930	-	VAV2	chr9	136726554	-
Frame-shit	ENST00000371753	ENST00000359428		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
In-frame	ENST00000371753	ENST00000411637		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
Frame-shit	ENST00000371753	ENST00000451030		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
In-frame	ENST00000371753	ENST00000483497		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
5CDS-intron	ENST00000371753	ENST00000465486		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
Frame-shit	ENST00000277554	ENST00000359428		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
In-frame	ENST00000277554	ENST00000411637		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
Frame-shit	ENST00000277554	ENST00000451030		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
In-frame	ENST00000277554	ENST00000483497		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
5CDS-intron	ENST00000277554	ENST00000465486		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
intron-3CDS	ENST00000467669	ENST00000359428		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
intron-3CDS	ENST00000467669	ENST00000411637		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
intron-3CDS	ENST00000467669	ENST00000451030		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
intron-3CDS	ENST00000467669	ENST00000483497		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
intron-intron	ENST00000467669	ENST00000465486		TCGA	LD	BRCA	TCGA-A8-A08X-01A	NACC2	chr9	138941482	-	NUP214	chr9	134108841	+
Frame-shit	ENST00000579146	ENST00000333461		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PGAP3	chr17	37844087	-	STAC2	chr17	37373426	-
Frame-shit	ENST00000300658	ENST00000333461		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PGAP3	chr17	37844087	-	STAC2	chr17	37373426	-
Frame-shit	ENST00000378011	ENST00000333461		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PGAP3	chr17	37844087	-	STAC2	chr17	37373426	-
Frame-shit	ENST00000429199	ENST00000333461		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PGAP3	chr17	37844087	-	STAC2	chr17	37373426	-
5CDS-5UTR	ENST00000269554	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000269554	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-5UTR	ENST00000311500	ENST00000584601		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000406381		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000541774		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000445658		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000540147		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000584450		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000269571		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000578199		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000540042		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000311500	ENST00000584888		TCGA	LD	BRCA	TCGA-A8-A08X-01A	PIP4K2B	chr17	36955519	-	ERBB2	chr17	37855790	+
5UTR-intron	ENST00000308377	ENST00000474210		TCGA	LD	BRCA	TCGA-A8-A08X-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37886544	-
5UTR-intron	ENST00000308377	ENST00000394231		TCGA	LD	BRCA	TCGA-A8-A08X-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37886544	-
5UTR-intron	ENST00000308377	ENST00000577810		TCGA	LD	BRCA	TCGA-A8-A08X-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37886544	-
intron-intron	ENST00000394566	ENST00000474210		TCGA	LD	BRCA	TCGA-A8-A08X-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37886544	-
intron-intron	ENST00000394566	ENST00000394231		TCGA	LD	BRCA	TCGA-A8-A08X-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37886544	-
intron-intron	ENST00000394566	ENST00000577810		TCGA	LD	BRCA	TCGA-A8-A08X-01A	SLFN11	chr17	33700493	-	MIEN1	chr17	37886544	-
In-frame	ENST00000430069	ENST00000264265		TCGA	LD	BRCA	TCGA-A8-A08X-01A	TBL1XR1	chr3	176750759	-	LXN	chr3	158388808	-
Frame-shit	ENST00000457928	ENST00000264265		TCGA	LD	BRCA	TCGA-A8-A08X-01A	TBL1XR1	chr3	176750759	-	LXN	chr3	158388808	-
3UTR-3CDS	ENST00000313949	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000313949	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-intron	ENST00000313949	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000371098	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000371098	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-intron	ENST00000371098	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000371075	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000371075	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-intron	ENST00000371075	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000371100	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000371100	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
5CDS-intron	ENST00000371100	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000371099	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000371099	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-intron	ENST00000371099	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000371102	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000371102	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-intron	ENST00000371102	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000464624	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000464624	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-intron	ENST00000464624	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000306120	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000306120	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-intron	ENST00000306120	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000371095	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000371095	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-intron	ENST00000371095	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000371085	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000371085	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
5CDS-intron	ENST00000371085	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000354359	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000354359	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
5CDS-intron	ENST00000354359	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000265620	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000265620	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-intron	ENST00000265620	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000306090	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-3CDS	ENST00000306090	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
intron-intron	ENST00000306090	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000371081	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
In-frame	ENST00000371081	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
5CDS-intron	ENST00000371081	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	GNAS	chr20	57474040	+	CPB1	chr3	148545789	+
3UTR-3CDS	ENST00000535977	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000535977	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3UTR	ENST00000535977	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000539661	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000539661	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3UTR	ENST00000539661	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000538492	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000538492	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3UTR	ENST00000538492	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000248139	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000248139	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3UTR	ENST00000248139	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	RAB40C	chr16	678302	+	CPB1	chr3	148577606	+
3UTR-3CDS	ENST00000376929	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000376929	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-intron	ENST00000376929	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
intron-3CDS	ENST00000506690	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
intron-3CDS	ENST00000506690	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
intron-intron	ENST00000506690	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000389805	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000389805	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-intron	ENST00000389805	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000402874	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000402874	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-intron	ENST00000402874	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000510187	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000510187	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-intron	ENST00000510187	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000360718	ENST00000491148		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-3CDS	ENST00000360718	ENST00000282957		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
3UTR-intron	ENST00000360718	ENST00000498639		TCGA	LD	BRCA	TCGA-A8-A091-01A	SQSTM1	chr5	179263664	+	CPB1	chr3	148558473	+
Frame-shit	ENST00000252996	ENST00000372262		TCGA	LD	BRCA	TCGA-A8-A091-01A	TAF4	chr20	60639507	-	CDH22	chr20	44856266	-
Frame-shit	ENST00000252996	ENST00000537909		TCGA	LD	BRCA	TCGA-A8-A091-01A	TAF4	chr20	60639507	-	CDH22	chr20	44856266	-
5CDS-intron	ENST00000252996	ENST00000474438		TCGA	LD	BRCA	TCGA-A8-A091-01A	TAF4	chr20	60639507	-	CDH22	chr20	44856266	-
intron-3CDS	ENST00000609045	ENST00000372262		TCGA	LD	BRCA	TCGA-A8-A091-01A	TAF4	chr20	60639507	-	CDH22	chr20	44856266	-
intron-3CDS	ENST00000609045	ENST00000537909		TCGA	LD	BRCA	TCGA-A8-A091-01A	TAF4	chr20	60639507	-	CDH22	chr20	44856266	-
intron-intron	ENST00000609045	ENST00000474438		TCGA	LD	BRCA	TCGA-A8-A091-01A	TAF4	chr20	60639507	-	CDH22	chr20	44856266	-
5UTR-intron	ENST00000333090	ENST00000436072		TCGA	LD	BRCA	TCGA-A8-A091-01A	TSKU	chr11	76494448	+	SFRP4	chr7	37966376	-
intron-intron	ENST00000527881	ENST00000436072		TCGA	LD	BRCA	TCGA-A8-A091-01A	TSKU	chr11	76494448	+	SFRP4	chr7	37966376	-
In-frame	ENST00000324771	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000324771	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000324771	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000324771	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000418800	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000418800	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000418800	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000418800	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000454612	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000454612	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000454612	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000454612	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376569	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376569	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000376569	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376569	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-3CDS	ENST00000446312	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-3CDS	ENST00000446312	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-3UTR	ENST00000446312	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000446312	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376575	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376575	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000376575	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376575	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376570	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376570	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000376570	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376570	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376568	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376568	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000376568	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376568	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000452441	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000452441	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000452441	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000452441	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000508312	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000508312	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000508312	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000508312	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376567	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000376567	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000376567	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000376567	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000513240	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000513240	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000513240	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000513240	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-3CDS	ENST00000508472	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-3CDS	ENST00000508472	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-3UTR	ENST00000508472	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
3UTR-intron	ENST00000508472	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000361741	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
In-frame	ENST00000361741	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-3UTR	ENST00000361741	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
5CDS-intron	ENST00000361741	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000434428	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000434428	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000434428	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000434428	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000483193	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000483193	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000483193	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000483193	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000383377	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000383377	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000383377	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000383377	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400414	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400414	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400414	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400414	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000259875	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000259875	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000259875	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000259875	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000552721	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000552721	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000552721	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552721	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000553015	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000553015	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000553015	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000553015	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000468225	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000468225	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000468225	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000468225	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400411	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400411	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400411	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400411	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400410	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400410	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400410	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400410	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000412329	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000412329	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000412329	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000412329	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000449518	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000449518	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000449518	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000449518	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000427053	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000427053	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000427053	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000427053	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000548962	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000548962	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000548962	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548962	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000548133	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000548133	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000548133	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548133	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000462241	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000462241	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000462241	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000462241	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000415092	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000415092	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000415092	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000415092	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000453510	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000453510	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000453510	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000453510	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000550666	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000550666	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000550666	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550666	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000488414	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000488414	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000488414	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000488414	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000422628	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000422628	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000422628	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000422628	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400492	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400492	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400492	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400492	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400491	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400491	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400491	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400491	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400489	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400489	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400489	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400489	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000549026	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000549026	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000549026	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000549026	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000550395	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000550395	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000550395	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550395	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000490712	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000490712	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000490712	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000490712	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400488	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400488	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400488	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400488	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400486	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000400486	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000400486	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000400486	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000552434	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000552434	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000552434	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552434	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000430933	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000430933	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000430933	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000430933	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000429699	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000429699	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000429699	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000429699	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000421229	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000421229	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000421229	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000421229	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000550384	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000550384	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000550384	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000550384	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000552068	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000552068	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000552068	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000552068	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000487780	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000487780	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000487780	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000487780	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000454774	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000454774	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000454774	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000454774	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000419412	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000419412	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000419412	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000419412	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000548693	ENST00000259873		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3CDS	ENST00000548693	ENST00000506373		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-3UTR	ENST00000548693	ENST00000472229		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000454427		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000477010		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000437247		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000430402		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000489289		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000418070		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000426945		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000468755		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000412843		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000327800		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000469397		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000400594		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000451032		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000493769		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000440992		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000412451		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000428224		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
intron-intron	ENST00000548693	ENST00000472444		TCGA	LD	BRCA	TCGA-A8-A092-01A	DDR1	chr6	30859965	+	MRPS18B	chr6	30587270	+
Frame-shit	ENST00000313050	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
intron-3CDS	ENST00000467838	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
Frame-shit	ENST00000371706	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
intron-3CDS	ENST00000313084	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
Frame-shit	ENST00000290037	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
Frame-shit	ENST00000431893	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
intron-3CDS	ENST00000398335	ENST00000358701		TCGA	LD	BRCA	TCGA-A8-A094-01A	SEC16A	chr9	139353586	-	QSOX2	chr9	139103298	-
intron-5UTR	ENST00000449833	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449833	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449833	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449833	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000449833	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409161	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409161	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409161	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409161	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000409161	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000423696	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000423696	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000423696	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000423696	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000423696	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000338508	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000338508	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000338508	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000338508	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
5CDS-intron	ENST00000338508	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409530	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409530	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409530	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000409530	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000409530	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449116	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449116	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449116	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000449116	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000449116	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000357171	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000357171	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000357171	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000357171	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000357171	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000468619	ENST00000355693		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000468619	ENST00000545127		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000468619	ENST00000541455		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000468619	ENST00000537289		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
intron-intron	ENST00000468619	ENST00000537581		TCGA	LD	BRCA	TCGA-A8-A094-01A	SHANK2	chr11	70742606	-	COA4	chr11	73584439	-
5UTR-3CDS	ENST00000347230	ENST00000487861		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000347230	ENST00000471583		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000347230	ENST00000487270		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000347230	ENST00000488612		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000347230	ENST00000390683		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3UTR	ENST00000347230	ENST00000469165		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000557306	ENST00000487861		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000557306	ENST00000471583		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000557306	ENST00000487270		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000557306	ENST00000488612		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000557306	ENST00000390683		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
intron-3UTR	ENST00000557306	ENST00000469165		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000555452	ENST00000487861		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000555452	ENST00000471583		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000555452	ENST00000487270		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000555452	ENST00000488612		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000555452	ENST00000390683		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3UTR	ENST00000555452	ENST00000469165		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZFYVE26	chr14	68283251	-	RAD51B	chr14	68878141	+
5UTR-3CDS	ENST00000599227	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000599227	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000599227	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000599227	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000599227	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000599227	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000269829	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000269829	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000269829	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000269829	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000269829	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000269829	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000594384	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000594384	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000594384	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000594384	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000594384	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000594384	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
3UTR-3CDS	ENST00000596597	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
3UTR-3CDS	ENST00000596597	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
3UTR-3CDS	ENST00000596597	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
3UTR-3CDS	ENST00000596597	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
3UTR-3CDS	ENST00000596597	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
3UTR-intron	ENST00000596597	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596825	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596825	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596825	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596825	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596825	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000596825	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000333581	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000333581	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000333581	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000333581	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000333581	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000333581	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000599953	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000599953	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000599953	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000599953	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000599953	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-intron	ENST00000599953	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596652	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596652	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596652	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596652	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596652	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000596652	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600044	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600044	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600044	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600044	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600044	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000600044	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600220	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600220	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600220	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600220	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000600220	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000600220	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596929	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596929	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596929	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596929	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000596929	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000596929	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000595981	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000595981	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000595981	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000595981	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-3CDS	ENST00000595981	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
5UTR-intron	ENST00000595981	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000415203	ENST00000370010		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000415203	ENST00000370014		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000415203	ENST00000447266		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000415203	ENST00000541192		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-3CDS	ENST00000415203	ENST00000327284		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
intron-intron	ENST00000415203	ENST00000436928		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNF544	chr19	58741828	+	SENP6	chr6	76385576	+
In-frame	ENST00000544604	ENST00000307790		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
In-frame	ENST00000544604	ENST00000397771		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
In-frame	ENST00000544604	ENST00000542393		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
5CDS-intron	ENST00000544604	ENST00000478812		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
5UTR-3CDS	ENST00000332811	ENST00000307790		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
5UTR-3CDS	ENST00000332811	ENST00000397771		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
5UTR-3CDS	ENST00000332811	ENST00000542393		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
5UTR-intron	ENST00000332811	ENST00000478812		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-3CDS	ENST00000402174	ENST00000307790		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-3CDS	ENST00000402174	ENST00000397771		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-3CDS	ENST00000402174	ENST00000542393		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-intron	ENST00000402174	ENST00000478812		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-3CDS	ENST00000406323	ENST00000307790		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-3CDS	ENST00000406323	ENST00000397771		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-3CDS	ENST00000406323	ENST00000542393		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
intron-intron	ENST00000406323	ENST00000478812		TCGA	LD	BRCA	TCGA-A8-A094-01A	ZNRF3	chr22	29280054	+	ASCC2	chr22	30221246	-
In-frame	ENST00000492622	ENST00000382869		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000492622	ENST00000382881		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000492622	ENST00000382874		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000492622	ENST00000382871		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000492622	ENST00000382883		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000492622	ENST00000494061		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
In-frame	ENST00000541916	ENST00000382869		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000541916	ENST00000382881		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000541916	ENST00000382874		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000541916	ENST00000382871		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000541916	ENST00000382883		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000541916	ENST00000494061		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
intron-3CDS	ENST00000398316	ENST00000382869		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
intron-intron	ENST00000398316	ENST00000382881		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
intron-intron	ENST00000398316	ENST00000382874		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
intron-intron	ENST00000398316	ENST00000382871		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
intron-intron	ENST00000398316	ENST00000382883		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
intron-intron	ENST00000398316	ENST00000494061		TCGA	LD	BRCA	TCGA-A8-A096-01A	FNDC3A	chr13	49580425	+	ZMYM2	chr13	20625573	+
5CDS-intron	ENST00000346329	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000346329	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000346329	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-3UTR	ENST00000346329	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000301843	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000301843	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000301843	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-3UTR	ENST00000301843	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000527622	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000527622	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000527622	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000527622	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000376561	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000376561	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-intron	ENST00000376561	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
5CDS-3UTR	ENST00000376561	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000538675	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000538675	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-intron	ENST00000538675	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
intron-3UTR	ENST00000538675	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A097-01A	CTTN	chr11	70260758	+	MYEOV	chr11	69181511	+
In-frame	ENST00000230036	ENST00000265260		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
5CDS-5UTR	ENST00000230036	ENST00000469941		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
5CDS-intron	ENST00000230036	ENST00000296024		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
5CDS-3UTR	ENST00000230036	ENST00000486406		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
intron-3CDS	ENST00000474784	ENST00000265260		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
intron-5UTR	ENST00000474784	ENST00000469941		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
intron-intron	ENST00000474784	ENST00000296024		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
intron-3UTR	ENST00000474784	ENST00000486406		TCGA	LD	BRCA	TCGA-A8-A097-01A	GPLD1	chr6	24450017	-	PCNP	chr3	101309059	+
5CDS-intron	ENST00000361413	ENST00000413465		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000361413	ENST00000359597		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000361413	ENST00000269305		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000361413	ENST00000455263		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000361413	ENST00000420246		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000361413	ENST00000445888		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000361413	ENST00000574684		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000542606	ENST00000413465		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000542606	ENST00000359597		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000542606	ENST00000269305		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000542606	ENST00000455263		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000542606	ENST00000420246		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000542606	ENST00000445888		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000542606	ENST00000574684		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000572370	ENST00000413465		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000572370	ENST00000359597		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000572370	ENST00000269305		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000572370	ENST00000455263		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000572370	ENST00000420246		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-5UTR	ENST00000572370	ENST00000445888		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5CDS-intron	ENST00000572370	ENST00000574684		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-intron	ENST00000589033	ENST00000413465		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-intron	ENST00000589033	ENST00000359597		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589033	ENST00000269305		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589033	ENST00000455263		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589033	ENST00000420246		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589033	ENST00000445888		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
5UTR-intron	ENST00000589033	ENST00000574684		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-intron	ENST00000575027	ENST00000413465		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-intron	ENST00000575027	ENST00000359597		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-5UTR	ENST00000575027	ENST00000269305		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-5UTR	ENST00000575027	ENST00000455263		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-5UTR	ENST00000575027	ENST00000420246		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-5UTR	ENST00000575027	ENST00000445888		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
intron-intron	ENST00000575027	ENST00000574684		TCGA	LD	BRCA	TCGA-A8-A097-01A	KIAA0753	chr17	6524108	-	TP53	chr17	7579940	-
Frame-shit	ENST00000261497	ENST00000275053		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
Frame-shit	ENST00000261497	ENST00000369251		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
5CDS-intron	ENST00000261497	ENST00000506256		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
intron-3CDS	ENST00000537526	ENST00000275053		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
intron-3CDS	ENST00000537526	ENST00000369251		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
intron-intron	ENST00000537526	ENST00000506256		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
intron-3CDS	ENST00000455117	ENST00000275053		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
intron-3CDS	ENST00000455117	ENST00000369251		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
intron-intron	ENST00000455117	ENST00000506256		TCGA	LD	BRCA	TCGA-A8-A097-01A	USP22	chr17	20945978	-	MMS22L	chr6	97726774	-
Frame-shit	ENST00000287218	ENST00000367255		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000356820		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000423061		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000448038		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000341594		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000265368		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000367253		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000367248		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000413186		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000466159		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000539504		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000347037		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000354674		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000287218	ENST00000495090		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
Frame-shit	ENST00000373391	ENST00000367255		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000356820		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000423061		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000448038		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000341594		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000265368		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000367253		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000367248		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000413186		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000466159		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000539504		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000347037		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000354674		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
5CDS-intron	ENST00000373391	ENST00000495090		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-3CDS	ENST00000463847	ENST00000367255		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000356820		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000423061		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000448038		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000341594		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000265368		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000367253		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000367248		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000413186		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000466159		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000539504		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000347037		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000354674		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-intron	ENST00000463847	ENST00000495090		TCGA	LD	BRCA	TCGA-A8-A097-01A	ZFAND3	chr6	38084515	+	SYNE1	chr6	152832238	-
intron-3CDS	ENST00000530124	ENST00000330574		TCGA	LD	BRCA	TCGA-A8-A09A-01A	AHNAK	chr11	62259204	-	INTS5	chr11	62417471	-
Frame-shit	ENST00000257247	ENST00000330574		TCGA	LD	BRCA	TCGA-A8-A09A-01A	AHNAK	chr11	62259204	-	INTS5	chr11	62417471	-
5UTR-3CDS	ENST00000525875	ENST00000330574		TCGA	LD	BRCA	TCGA-A8-A09A-01A	AHNAK	chr11	62259204	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000378024	ENST00000330574		TCGA	LD	BRCA	TCGA-A8-A09A-01A	AHNAK	chr11	62259204	-	INTS5	chr11	62417471	-
Frame-shit	ENST00000381525	ENST00000330636		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000381525	ENST00000468929		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000381525	ENST00000464010		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000381525	ENST00000480566		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000381525	ENST00000500576		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000381525	ENST00000606472		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
Frame-shit	ENST00000362009	ENST00000330636		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000362009	ENST00000468929		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000362009	ENST00000464010		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000362009	ENST00000480566		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000362009	ENST00000500576		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000362009	ENST00000606472		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-3CDS	ENST00000307236	ENST00000330636		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000307236	ENST00000468929		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000307236	ENST00000464010		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000307236	ENST00000480566		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000307236	ENST00000500576		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000307236	ENST00000606472		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-3CDS	ENST00000542100	ENST00000330636		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000542100	ENST00000468929		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000542100	ENST00000464010		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000542100	ENST00000480566		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000542100	ENST00000500576		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000542100	ENST00000606472		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-3CDS	ENST00000546212	ENST00000330636		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000546212	ENST00000468929		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000546212	ENST00000464010		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000546212	ENST00000480566		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000546212	ENST00000500576		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5UTR-intron	ENST00000546212	ENST00000606472		TCGA	LD	BRCA	TCGA-A8-A09A-01A	E2F6	chr2	11605898	-	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000446394	ENST00000371687		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000446394	ENST00000543648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000446394	ENST00000490164		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000446394	ENST00000336126		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000371681	ENST00000371687		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000371681	ENST00000543648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000371681	ENST00000490164		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000371681	ENST00000336126		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000298068	ENST00000371687		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000298068	ENST00000543648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000298068	ENST00000490164		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
5CDS-intron	ENST00000298068	ENST00000336126		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000536715	ENST00000371687		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000536715	ENST00000543648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000536715	ENST00000490164		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000536715	ENST00000336126		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000498446	ENST00000371687		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000498446	ENST00000543648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000498446	ENST00000490164		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000498446	ENST00000336126		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000371667	ENST00000371687		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000371667	ENST00000543648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000371667	ENST00000490164		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
intron-intron	ENST00000371667	ENST00000336126		TCGA	LD	BRCA	TCGA-A8-A09A-01A	HECTD2	chr10	93185167	+	PCGF5	chr10	93031395	+
Frame-shit	ENST00000523731	ENST00000414645		TCGA	LD	BRCA	TCGA-A8-A09A-01A	INTS8	chr8	95835789	+	DPY19L4	chr8	95778840	+
Frame-shit	ENST00000447247	ENST00000414645		TCGA	LD	BRCA	TCGA-A8-A09A-01A	INTS8	chr8	95835789	+	DPY19L4	chr8	95778840	+
intron-3CDS	ENST00000520845	ENST00000414645		TCGA	LD	BRCA	TCGA-A8-A09A-01A	INTS8	chr8	95835789	+	DPY19L4	chr8	95778840	+
intron-3CDS	ENST00000306888	ENST00000295454		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
intron-3CDS	ENST00000306888	ENST00000538619		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
intron-intron	ENST00000306888	ENST00000509366		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
Frame-shit	ENST00000263925	ENST00000295454		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
Frame-shit	ENST00000263925	ENST00000538619		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000263925	ENST00000509366		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
intron-3CDS	ENST00000504605	ENST00000295454		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
intron-3CDS	ENST00000504605	ENST00000538619		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
intron-intron	ENST00000504605	ENST00000509366		TCGA	LD	BRCA	TCGA-A8-A09A-01A	LNX1	chr4	54439790	-	GABRB1	chr4	47322144	+
Frame-shit	ENST00000338368	ENST00000221130		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000338368	ENST00000414019		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000338368	ENST00000546342		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000338368	ENST00000537535		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000338368	ENST00000541648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000314191	ENST00000221130		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000314191	ENST00000414019		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000314191	ENST00000546342		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000314191	ENST00000537535		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
Frame-shit	ENST00000314191	ENST00000541648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
5UTR-3CDS	ENST00000523565	ENST00000221130		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
5UTR-3CDS	ENST00000523565	ENST00000414019		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
5UTR-3CDS	ENST00000523565	ENST00000546342		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
5UTR-3CDS	ENST00000523565	ENST00000537535		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
5UTR-3CDS	ENST00000523565	ENST00000541648		TCGA	LD	BRCA	TCGA-A8-A09A-01A	PRKDC	chr8	48848292	-	GSR	chr8	30567419	-
In-frame	ENST00000372733	ENST00000372726		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SDC4	chr20	43961663	-	TP53TG5	chr20	44006253	-
In-frame	ENST00000372733	ENST00000537995		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SDC4	chr20	43961663	-	TP53TG5	chr20	44006253	-
5CDS-5UTR	ENST00000372733	ENST00000494455		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SDC4	chr20	43961663	-	TP53TG5	chr20	44006253	-
In-frame	ENST00000537976	ENST00000372726		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SDC4	chr20	43961663	-	TP53TG5	chr20	44006253	-
In-frame	ENST00000537976	ENST00000537995		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SDC4	chr20	43961663	-	TP53TG5	chr20	44006253	-
5CDS-5UTR	ENST00000537976	ENST00000494455		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SDC4	chr20	43961663	-	TP53TG5	chr20	44006253	-
5CDS-5UTR	ENST00000348405	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000348405	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000348405	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000348405	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000513858	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000513858	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000513858	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000513858	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000395310	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000395310	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000395310	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000395310	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000443462	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000443462	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000443462	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000443462	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000509142	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000509142	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000509142	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000509142	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000326950	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000326950	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000326950	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000326950	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000432794	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000432794	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000432794	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000432794	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000311785	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000311785	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000311785	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000311785	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000448323	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000448323	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000448323	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000448323	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000505472	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000505472	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000505472	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000505472	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000500777	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000500777	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000500777	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000500777	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000508502	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000508502	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000508502	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000508502	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000355196	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000355196	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000355196	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000355196	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000264405	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000264405	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000264405	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000264405	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000505984	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000505984	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000505984	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000505984	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000508479	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000508479	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000508479	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000508479	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
intron-5UTR	ENST00000436790	ENST00000413702		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
intron-5UTR	ENST00000436790	ENST00000456088		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
intron-5UTR	ENST00000436790	ENST00000304887		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
intron-3UTR	ENST00000436790	ENST00000514512		TCGA	LD	BRCA	TCGA-A8-A09A-01A	SEC31A	chr4	83778105	-	MUC7	chr4	71337932	+
Frame-shit	ENST00000262291	ENST00000540871		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000262291	ENST00000261479		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000262291	ENST00000553809		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000262291	ENST00000555764		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000262291	ENST00000556506		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000537567	ENST00000540871		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000537567	ENST00000261479		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000537567	ENST00000553809		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000537567	ENST00000555764		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000537567	ENST00000556506		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000539763	ENST00000540871		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000539763	ENST00000261479		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000539763	ENST00000553809		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000539763	ENST00000555764		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000539763	ENST00000556506		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000536180	ENST00000540871		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000536180	ENST00000261479		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000536180	ENST00000553809		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000536180	ENST00000555764		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000536180	ENST00000556506		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000545362	ENST00000540871		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000545362	ENST00000261479		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000545362	ENST00000553809		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000545362	ENST00000555764		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
In-frame	ENST00000545362	ENST00000556506		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000588617	ENST00000540871		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000588617	ENST00000261479		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000588617	ENST00000553809		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000588617	ENST00000555764		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000588617	ENST00000556506		TCGA	LD	BRCA	TCGA-A8-A09A-01A	VMP1	chr17	57851246	+	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000353703	ENST00000372806		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-3CDS	ENST00000353703	ENST00000396731		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-3CDS	ENST00000353703	ENST00000372801		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-intron	ENST00000353703	ENST00000499879		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-intron	ENST00000353703	ENST00000487587		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
3UTR-3CDS	ENST00000479421	ENST00000372806		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
3UTR-3CDS	ENST00000479421	ENST00000396731		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
3UTR-3CDS	ENST00000479421	ENST00000372801		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
3UTR-intron	ENST00000479421	ENST00000499879		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
3UTR-intron	ENST00000479421	ENST00000487587		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-3CDS	ENST00000372839	ENST00000372806		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-3CDS	ENST00000372839	ENST00000396731		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-3CDS	ENST00000372839	ENST00000372801		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-intron	ENST00000372839	ENST00000499879		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
5UTR-intron	ENST00000372839	ENST00000487587		TCGA	LD	BRCA	TCGA-A8-A09A-01A	YWHAB	chr20	43514527	+	STK4	chr20	43615773	+
intron-3CDS	ENST00000341885	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
intron-3CDS	ENST00000341885	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
intron-3UTR	ENST00000341885	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
Frame-shit	ENST00000468695	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
Frame-shit	ENST00000468695	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
5CDS-3UTR	ENST00000468695	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
5UTR-3CDS	ENST00000492007	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
5UTR-3CDS	ENST00000492007	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
5UTR-3UTR	ENST00000492007	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
In-frame	ENST00000373501	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
In-frame	ENST00000373501	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
5CDS-3UTR	ENST00000373501	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZBTB8OS	chr1	33093109	-	IGF2BP1	chr17	47109272	+
In-frame	ENST00000599916	ENST00000227495		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000599916	ENST00000444328		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000599916	ENST00000356132		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000599916	ENST00000530591		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000599916	ENST00000534083		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000599916	ENST00000392669		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000599916	ENST00000526756		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000599916	ENST00000526727		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000599916	ENST00000449406		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000599916	ENST00000532243		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000599916	ENST00000534457		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000601773	ENST00000227495		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000601773	ENST00000444328		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000601773	ENST00000356132		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000601773	ENST00000530591		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000601773	ENST00000534083		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000601773	ENST00000392669		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000601773	ENST00000526756		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000601773	ENST00000526727		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000601773	ENST00000449406		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000601773	ENST00000532243		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000601773	ENST00000534457		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000397126	ENST00000227495		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000397126	ENST00000444328		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000397126	ENST00000356132		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000397126	ENST00000530591		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000397126	ENST00000534083		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
In-frame	ENST00000397126	ENST00000392669		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000397126	ENST00000526756		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000397126	ENST00000526727		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000397126	ENST00000449406		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000397126	ENST00000532243		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5CDS-intron	ENST00000397126	ENST00000534457		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-3CDS	ENST00000597040	ENST00000227495		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-3CDS	ENST00000597040	ENST00000444328		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-3CDS	ENST00000597040	ENST00000356132		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-3CDS	ENST00000597040	ENST00000530591		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-3CDS	ENST00000597040	ENST00000534083		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-3CDS	ENST00000597040	ENST00000392669		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-intron	ENST00000597040	ENST00000526756		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-intron	ENST00000597040	ENST00000526727		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-intron	ENST00000597040	ENST00000449406		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-intron	ENST00000597040	ENST00000532243		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
5UTR-intron	ENST00000597040	ENST00000534457		TCGA	LD	BRCA	TCGA-A8-A09A-01A	ZNF208	chr19	22193594	-	ST3GAL4	chr11	126279163	+
intron-3CDS	ENST00000434271	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000353047	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000530640	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000531089	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000453527	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
intron-3CDS	ENST00000415599	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000345125	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000533455	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000534510	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
5UTR-3CDS	ENST00000525076	ENST00000382208		TCGA	LD	BRCA	TCGA-A8-A09B-01A	CTSB	chr8	11725510	-	DEFB135	chr8	11841930	+
Frame-shit	ENST00000281038	ENST00000534064		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
In-frame	ENST00000281038	ENST00000535943		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
5CDS-intron	ENST00000281038	ENST00000525931		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
5CDS-intron	ENST00000281038	ENST00000529807		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
5CDS-intron	ENST00000281038	ENST00000527522		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
Frame-shit	ENST00000528850	ENST00000534064		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
In-frame	ENST00000528850	ENST00000535943		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
5CDS-intron	ENST00000528850	ENST00000525931		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
5CDS-intron	ENST00000528850	ENST00000529807		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
5CDS-intron	ENST00000528850	ENST00000527522		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NARS2	chr11	78239888	-	INTS4	chr11	77590173	-
Frame-shit	ENST00000356175	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
Frame-shit	ENST00000356175	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
Frame-shit	ENST00000358273	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
Frame-shit	ENST00000358273	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
Frame-shit	ENST00000431387	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
Frame-shit	ENST00000431387	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
intron-3CDS	ENST00000581113	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
intron-3CDS	ENST00000581113	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
intron-3CDS	ENST00000417592	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
intron-3CDS	ENST00000417592	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
intron-3CDS	ENST00000444181	ENST00000322652		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
intron-3CDS	ENST00000444181	ENST00000580398		TCGA	LD	BRCA	TCGA-A8-A09C-01A	NF1	chr17	29533389	+	SUZ12	chr17	30293166	+
Frame-shit	ENST00000533211	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000533211	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000533211	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
In-frame	ENST00000309996	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
In-frame	ENST00000309996	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000309996	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
In-frame	ENST00000529997	ENST00000376217		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
In-frame	ENST00000529997	ENST00000315938		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000529997	ENST00000527489		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SPTBN2	chr11	66463748	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000269033	ENST00000296684		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SSH2	chr17	28256956	-	NDUFS4	chr5	52899282	+
Frame-shit	ENST00000540801	ENST00000296684		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SSH2	chr17	28256956	-	NDUFS4	chr5	52899282	+
intron-3CDS	ENST00000324677	ENST00000296684		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SSH2	chr17	28256956	-	NDUFS4	chr5	52899282	+
In-frame	ENST00000582084	ENST00000296684		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SSH2	chr17	28256956	-	NDUFS4	chr5	52899282	+
Frame-shit	ENST00000590153	ENST00000296684		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SSH2	chr17	28256956	-	NDUFS4	chr5	52899282	+
Frame-shit	ENST00000579954	ENST00000296684		TCGA	LD	BRCA	TCGA-A8-A09C-01A	SSH2	chr17	28256956	-	NDUFS4	chr5	52899282	+
5CDS-5UTR	ENST00000371917	ENST00000341724		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000371917	ENST00000372004		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000371917	ENST00000371998		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000371917	ENST00000371997		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000371917	ENST00000497292		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000493140	ENST00000341724		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000493140	ENST00000372004		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000493140	ENST00000371998		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000493140	ENST00000371997		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000493140	ENST00000497292		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ARFGEF2	chr20	47580435	+	NCOA3	chr20	46211927	+
5UTR-5UTR	ENST00000434074	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000434074	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000312040	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000312040	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000451945	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000451945	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000529655	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000529655	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000530500	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000530500	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000526508	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000526508	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000524625	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000524625	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000359513	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000359513	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000528494	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
5UTR-5UTR	ENST00000528494	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000526485	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
intron-5UTR	ENST00000526485	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	ATG13	chr11	46639440	+	TSPAN18	chr11	44881879	+
Frame-shit	ENST00000337198	ENST00000326799		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
Frame-shit	ENST00000337198	ENST00000376016		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
Frame-shit	ENST00000337198	ENST00000375972		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5CDS-5UTR	ENST00000337198	ENST00000463270		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5CDS-intron	ENST00000337198	ENST00000477432		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
In-frame	ENST00000347770	ENST00000326799		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
In-frame	ENST00000347770	ENST00000376016		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
In-frame	ENST00000347770	ENST00000375972		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5CDS-5UTR	ENST00000347770	ENST00000463270		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5CDS-intron	ENST00000347770	ENST00000477432		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5UTR-3CDS	ENST00000522311	ENST00000326799		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5UTR-3CDS	ENST00000522311	ENST00000376016		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5UTR-3CDS	ENST00000522311	ENST00000375972		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5UTR-5UTR	ENST00000522311	ENST00000463270		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5UTR-intron	ENST00000522311	ENST00000477432		TCGA	LD	BRCA	TCGA-A8-A09D-01A	AZIN1	chr8	103851878	-	YME1L1	chr10	27412628	-
5CDS-5UTR	ENST00000378847	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CAMK1D	chr10	12856306	+	TSPAN18	chr11	44785976	+
5CDS-5UTR	ENST00000378847	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CAMK1D	chr10	12856306	+	TSPAN18	chr11	44785976	+
intron-5UTR	ENST00000487696	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CAMK1D	chr10	12856306	+	TSPAN18	chr11	44785976	+
intron-5UTR	ENST00000487696	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CAMK1D	chr10	12856306	+	TSPAN18	chr11	44785976	+
5CDS-5UTR	ENST00000378845	ENST00000520358		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CAMK1D	chr10	12856306	+	TSPAN18	chr11	44785976	+
5CDS-5UTR	ENST00000378845	ENST00000340160		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CAMK1D	chr10	12856306	+	TSPAN18	chr11	44785976	+
In-frame	ENST00000294053	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000294053	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000294053	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000294053	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000294053	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000538039	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000538039	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000538039	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000538039	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000538039	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000437826	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000437826	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000437826	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000437826	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000437826	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000340729	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000340729	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000340729	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000340729	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000340729	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000543042	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000543042	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000543042	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000543042	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000543042	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-3CDS	ENST00000445069	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-3CDS	ENST00000445069	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-3CDS	ENST00000445069	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-intron	ENST00000445069	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-intron	ENST00000445069	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000538021	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000538021	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
In-frame	ENST00000538021	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000538021	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000538021	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-3CDS	ENST00000542555	ENST00000537576		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-3CDS	ENST00000542555	ENST00000305242		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-3CDS	ENST00000542555	ENST00000545014		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-intron	ENST00000542555	ENST00000480504		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
intron-intron	ENST00000542555	ENST00000239715		TCGA	LD	BRCA	TCGA-A8-A09D-01A	CLPB	chr11	72012847	-	ARMC4	chr10	28229734	-
5CDS-intron	ENST00000552864	ENST00000536525		TCGA	LD	BRCA	TCGA-A8-A09D-01A	LIN7A	chr12	81205244	-	NAV3	chr12	77965639	+
5CDS-intron	ENST00000552864	ENST00000397909		TCGA	LD	BRCA	TCGA-A8-A09D-01A	LIN7A	chr12	81205244	-	NAV3	chr12	77965639	+
5CDS-intron	ENST00000552864	ENST00000228327		TCGA	LD	BRCA	TCGA-A8-A09D-01A	LIN7A	chr12	81205244	-	NAV3	chr12	77965639	+
5CDS-intron	ENST00000552864	ENST00000266692		TCGA	LD	BRCA	TCGA-A8-A09D-01A	LIN7A	chr12	81205244	-	NAV3	chr12	77965639	+
5CDS-intron	ENST00000552864	ENST00000552300		TCGA	LD	BRCA	TCGA-A8-A09D-01A	LIN7A	chr12	81205244	-	NAV3	chr12	77965639	+
5CDS-intron	ENST00000552864	ENST00000541270		TCGA	LD	BRCA	TCGA-A8-A09D-01A	LIN7A	chr12	81205244	-	NAV3	chr12	77965639	+
5CDS-5UTR	ENST00000241041	ENST00000298834		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000241041	ENST00000426438		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000241041	ENST00000314845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000241041	ENST00000533727		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000241041	ENST00000534300		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000241041	ENST00000458649		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000241041	ENST00000528950		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000241041	ENST00000529963		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000378750	ENST00000298834		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000378750	ENST00000426438		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000378750	ENST00000314845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000378750	ENST00000533727		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000378750	ENST00000534300		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000378750	ENST00000458649		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000378750	ENST00000528950		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000378750	ENST00000529963		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532681	ENST00000298834		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532681	ENST00000426438		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532681	ENST00000314845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532681	ENST00000533727		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532681	ENST00000534300		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532681	ENST00000458649		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-intron	ENST00000532681	ENST00000528950		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-intron	ENST00000532681	ENST00000529963		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532554	ENST00000298834		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532554	ENST00000426438		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532554	ENST00000314845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532554	ENST00000533727		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532554	ENST00000534300		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-5UTR	ENST00000532554	ENST00000458649		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-intron	ENST00000532554	ENST00000528950		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
5UTR-intron	ENST00000532554	ENST00000529963		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PEX16	chr11	45939009	-	AMBRA1	chr11	46570050	-
In-frame	ENST00000257821	ENST00000378847		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5CDS-intron	ENST00000257821	ENST00000487696		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5CDS-intron	ENST00000257821	ENST00000378845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
In-frame	ENST00000323180	ENST00000378847		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5CDS-intron	ENST00000323180	ENST00000487696		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5CDS-intron	ENST00000323180	ENST00000378845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
In-frame	ENST00000418153	ENST00000378847		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5CDS-intron	ENST00000418153	ENST00000487696		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5CDS-intron	ENST00000418153	ENST00000378845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
intron-3CDS	ENST00000527753	ENST00000378847		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
intron-intron	ENST00000527753	ENST00000487696		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
intron-intron	ENST00000527753	ENST00000378845		TCGA	LD	BRCA	TCGA-A8-A09D-01A	PHF21A	chr11	46098305	-	CAMK1D	chr10	12811672	+
5UTR-3CDS	ENST00000264657	ENST00000407775		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000264657	ENST00000520492		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000264657	ENST00000517361		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000264657	ENST00000522296		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000264657	ENST00000378472		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000585517	ENST00000407775		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000585517	ENST00000520492		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000585517	ENST00000517361		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000585517	ENST00000522296		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000585517	ENST00000378472		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000389272	ENST00000407775		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000389272	ENST00000520492		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000389272	ENST00000517361		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000389272	ENST00000522296		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000389272	ENST00000378472		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000588969	ENST00000407775		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000588969	ENST00000520492		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000588969	ENST00000517361		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000588969	ENST00000522296		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000588969	ENST00000378472		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000404395	ENST00000407775		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000404395	ENST00000520492		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-3CDS	ENST00000404395	ENST00000517361		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000404395	ENST00000522296		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
5UTR-intron	ENST00000404395	ENST00000378472		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
intron-3CDS	ENST00000590776	ENST00000407775		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
intron-3CDS	ENST00000590776	ENST00000520492		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
intron-3CDS	ENST00000590776	ENST00000517361		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
intron-intron	ENST00000590776	ENST00000522296		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
intron-intron	ENST00000590776	ENST00000378472		TCGA	LD	BRCA	TCGA-A8-A09D-01A	STAT3	chr17	40540297	-	ZFPM2	chr8	106646474	+
Frame-shit	ENST00000534863	ENST00000418658		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000534863	ENST00000397461		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000534863	ENST00000427331		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000534863	ENST00000358480		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000534863	ENST00000397459		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000534863	ENST00000448906		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
5CDS-3UTR	ENST00000534863	ENST00000475817		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000470751	ENST00000418658		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000470751	ENST00000397461		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000470751	ENST00000427331		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000470751	ENST00000358480		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000470751	ENST00000397459		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000470751	ENST00000448906		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3UTR	ENST00000470751	ENST00000475817		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000272902	ENST00000418658		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000272902	ENST00000397461		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000272902	ENST00000427331		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000272902	ENST00000358480		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000272902	ENST00000397459		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000272902	ENST00000448906		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
5CDS-3UTR	ENST00000272902	ENST00000475817		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000383843	ENST00000418658		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000383843	ENST00000397461		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000383843	ENST00000427331		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000383843	ENST00000358480		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000383843	ENST00000397459		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000383843	ENST00000448906		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
5CDS-3UTR	ENST00000383843	ENST00000475817		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000458465	ENST00000418658		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000458465	ENST00000397461		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000458465	ENST00000427331		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000458465	ENST00000358480		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000458465	ENST00000397459		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3CDS	ENST00000458465	ENST00000448906		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
intron-3UTR	ENST00000458465	ENST00000475817		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000405420	ENST00000418658		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000405420	ENST00000397461		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000405420	ENST00000427331		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000405420	ENST00000358480		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000405420	ENST00000397459		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000405420	ENST00000448906		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
5CDS-3UTR	ENST00000405420	ENST00000475817		TCGA	LD	BRCA	TCGA-A8-A09D-01A	SUMF1	chr3	4458812	-	CNTN4	chr3	3030029	+
Frame-shit	ENST00000265087	ENST00000299980		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
Frame-shit	ENST00000265087	ENST00000423132		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
Frame-shit	ENST00000265087	ENST00000433195		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
Frame-shit	ENST00000265087	ENST00000569748		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
Frame-shit	ENST00000265087	ENST00000393512		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5CDS-intron	ENST00000265087	ENST00000570297		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5CDS-intron	ENST00000265087	ENST00000564155		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-3CDS	ENST00000520593	ENST00000299980		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-3CDS	ENST00000520593	ENST00000423132		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-3CDS	ENST00000520593	ENST00000433195		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-3CDS	ENST00000520593	ENST00000569748		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-3CDS	ENST00000520593	ENST00000393512		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-intron	ENST00000520593	ENST00000570297		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
5UTR-intron	ENST00000520593	ENST00000564155		TCGA	LD	BRCA	TCGA-A8-A09E-01A	STC2	chr5	172750222	-	AP1G1	chr16	71773244	-
In-frame	ENST00000589222	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
In-frame	ENST00000407086	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
In-frame	ENST00000390652	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
In-frame	ENST00000408905	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
In-frame	ENST00000588462	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
intron-3CDS	ENST00000585744	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
intron-3CDS	ENST00000588874	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
intron-3CDS	ENST00000585812	ENST00000371244		TCGA	LD	BRCA	TCGA-A8-A09G-01A	BCAS3	chr17	58885437	+	PRKAA2	chr1	57157067	+
intron-5UTR	ENST00000574590	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000574590	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000574590	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000574590	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000574590	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000575318	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000575318	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000575318	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000575318	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000575318	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000572904	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000572904	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000572904	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000572904	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000572904	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000262419	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000262419	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000262419	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000262419	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000262419	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000432791	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000432791	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000432791	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000432791	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000432791	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000393476	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000393476	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000393476	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000393476	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000393476	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000576248	ENST00000580825		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000576248	ENST00000254079		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000576248	ENST00000579000		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000576248	ENST00000394265		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000576248	ENST00000394267		TCGA	LD	BRCA	TCGA-A8-A09G-01A	KANSL1	chr17	44239843	-	PPP1R1B	chr17	37783559	+
In-frame	ENST00000300896	ENST00000573500		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000300896	ENST00000576221		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000300896	ENST00000268896		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000300896	ENST00000576183		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000300896	ENST00000325214		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-3CDS	ENST00000592339	ENST00000573500		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-intron	ENST00000592339	ENST00000576221		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-intron	ENST00000592339	ENST00000268896		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-intron	ENST00000592339	ENST00000576183		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-5UTR	ENST00000592339	ENST00000325214		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
In-frame	ENST00000393003	ENST00000573500		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393003	ENST00000576221		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393003	ENST00000268896		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-intron	ENST00000393003	ENST00000576183		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000393003	ENST00000325214		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-3CDS	ENST00000586881	ENST00000573500		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-intron	ENST00000586881	ENST00000576221		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-intron	ENST00000586881	ENST00000268896		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-intron	ENST00000586881	ENST00000576183		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
intron-5UTR	ENST00000586881	ENST00000325214		TCGA	LD	BRCA	TCGA-A8-A09G-01A	USP32	chr17	58469243	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000337714	ENST00000494757		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000337714	ENST00000323571		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000337714	ENST00000585043		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000337714	ENST00000394103		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000337714	ENST00000536600		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000337714	ENST00000583130		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-intron	ENST00000314126	ENST00000494757		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000314126	ENST00000323571		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000314126	ENST00000585043		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000314126	ENST00000394103		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000314126	ENST00000536600		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000314126	ENST00000583130		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-intron	ENST00000571629	ENST00000494757		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000571629	ENST00000323571		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000571629	ENST00000585043		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000571629	ENST00000394103		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000571629	ENST00000536600		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000571629	ENST00000583130		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-intron	ENST00000572557	ENST00000494757		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000572557	ENST00000323571		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000572557	ENST00000585043		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000572557	ENST00000394103		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000572557	ENST00000536600		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000572557	ENST00000583130		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-intron	ENST00000539273	ENST00000494757		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000539273	ENST00000323571		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000539273	ENST00000585043		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000539273	ENST00000394103		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000539273	ENST00000536600		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000539273	ENST00000583130		TCGA	LD	BRCA	TCGA-A8-A09I-01A	AKAP1	chr17	55162759	+	WIPF2	chr17	38412643	+
Frame-shit	ENST00000589222	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
Frame-shit	ENST00000407086	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
Frame-shit	ENST00000390652	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
Frame-shit	ENST00000408905	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
Frame-shit	ENST00000588462	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000585744	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000588874	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000585812	ENST00000264645		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	58824640	+	CASC3	chr17	38318006	+
In-frame	ENST00000589222	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000589222	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000589222	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000589222	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000407086	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000407086	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000407086	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000407086	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000390652	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000390652	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000390652	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000390652	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000408905	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000408905	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000408905	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000408905	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000588462	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000588462	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000588462	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000588462	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000585744	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000585744	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000585744	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000585744	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000588874	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000588874	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000588874	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000588874	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000585812	ENST00000583539		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000585812	ENST00000337432		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000585812	ENST00000487921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000585812	ENST00000421782		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BCAS3	chr17	59161925	+	RAD51C	chr17	56772292	+
In-frame	ENST00000259008	ENST00000225298		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BRIP1	chr17	59924462	-	UTP18	chr17	49365390	+
Frame-shit	ENST00000577598	ENST00000225298		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BRIP1	chr17	59924462	-	UTP18	chr17	49365390	+
intron-3CDS	ENST00000583837	ENST00000225298		TCGA	LD	BRCA	TCGA-A8-A09I-01A	BRIP1	chr17	59924462	-	UTP18	chr17	49365390	+
Frame-shit	ENST00000577809	ENST00000423485		TCGA	LD	BRCA	TCGA-A8-A09I-01A	C17orf75	chr17	30662342	-	TOP2A	chr17	38569877	-
Frame-shit	ENST00000225805	ENST00000423485		TCGA	LD	BRCA	TCGA-A8-A09I-01A	C17orf75	chr17	30662342	-	TOP2A	chr17	38569877	-
Frame-shit	ENST00000430627	ENST00000308249		TCGA	LD	BRCA	TCGA-A8-A09I-01A	CDK12	chr17	37628016	+	PPM1E	chr17	57046900	+
Frame-shit	ENST00000447079	ENST00000308249		TCGA	LD	BRCA	TCGA-A8-A09I-01A	CDK12	chr17	37628016	+	PPM1E	chr17	57046900	+
intron-3CDS	ENST00000559545	ENST00000308249		TCGA	LD	BRCA	TCGA-A8-A09I-01A	CDK12	chr17	37628016	+	PPM1E	chr17	57046900	+
Frame-shit	ENST00000251241	ENST00000435607		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DHX40	chr17	57679977	+	SCN4A	chr17	62024527	-
Frame-shit	ENST00000251241	ENST00000578147		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DHX40	chr17	57679977	+	SCN4A	chr17	62024527	-
Frame-shit	ENST00000451169	ENST00000435607		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DHX40	chr17	57679977	+	SCN4A	chr17	62024527	-
Frame-shit	ENST00000451169	ENST00000578147		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DHX40	chr17	57679977	+	SCN4A	chr17	62024527	-
Frame-shit	ENST00000425628	ENST00000435607		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DHX40	chr17	57679977	+	SCN4A	chr17	62024527	-
Frame-shit	ENST00000425628	ENST00000578147		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DHX40	chr17	57679977	+	SCN4A	chr17	62024527	-
5UTR-5UTR	ENST00000394389	ENST00000393271		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
5UTR-5UTR	ENST00000394389	ENST00000338165		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
5UTR-5UTR	ENST00000394389	ENST00000511648		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
intron-5UTR	ENST00000394386	ENST00000393271		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
intron-5UTR	ENST00000394386	ENST00000338165		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
intron-5UTR	ENST00000394386	ENST00000511648		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
intron-5UTR	ENST00000487847	ENST00000393271		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
intron-5UTR	ENST00000487847	ENST00000338165		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
intron-5UTR	ENST00000487847	ENST00000511648		TCGA	LD	BRCA	TCGA-A8-A09I-01A	DUSP14	chr17	35850058	+	EME1	chr17	48452545	+
In-frame	ENST00000583610	ENST00000582809		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000583610	ENST00000577616		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000583610	ENST00000326270		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000583610	ENST00000346027		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000583610	ENST00000343388		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000583610	ENST00000542523		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
Frame-shit	ENST00000394294	ENST00000582809		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000394294	ENST00000577616		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000394294	ENST00000326270		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000394294	ENST00000346027		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000394294	ENST00000343388		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000394294	ENST00000542523		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
Frame-shit	ENST00000264658	ENST00000582809		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000264658	ENST00000577616		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000264658	ENST00000326270		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000264658	ENST00000346027		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000264658	ENST00000343388		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000264658	ENST00000542523		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
Frame-shit	ENST00000577399	ENST00000582809		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000577399	ENST00000577616		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000577399	ENST00000326270		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000577399	ENST00000346027		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000577399	ENST00000343388		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000577399	ENST00000542523		TCGA	LD	BRCA	TCGA-A8-A09I-01A	FBXL20	chr17	37499433	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000184956	ENST00000474210		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000184956	ENST00000394231		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000184956	ENST00000577810		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000585976	ENST00000474210		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000585976	ENST00000394231		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000585976	ENST00000577810		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
intron-intron	ENST00000585712	ENST00000474210		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
intron-intron	ENST00000585712	ENST00000394231		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
intron-intron	ENST00000585712	ENST00000577810		TCGA	LD	BRCA	TCGA-A8-A09I-01A	HEATR6	chr17	58147072	-	MIEN1	chr17	37886544	-
In-frame	ENST00000294304	ENST00000398309		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
In-frame	ENST00000294304	ENST00000376104		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
In-frame	ENST00000294304	ENST00000418306		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
In-frame	ENST00000294304	ENST00000280241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
In-frame	ENST00000294304	ENST00000543673		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000376106		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000330014		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000537455		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000524982		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000532653		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000531015		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-5UTR	ENST00000294304	ENST00000398301		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-intron	ENST00000294304	ENST00000426717		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-intron	ENST00000294304	ENST00000404783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-intron	ENST00000294304	ENST00000398304		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-intron	ENST00000294304	ENST00000530800		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5CDS-intron	ENST00000294304	ENST00000472545		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-3CDS	ENST00000529481	ENST00000398309		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-3CDS	ENST00000529481	ENST00000376104		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-3CDS	ENST00000529481	ENST00000418306		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-3CDS	ENST00000529481	ENST00000280241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-3CDS	ENST00000529481	ENST00000543673		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000376106		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000330014		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000537455		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000524982		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000532653		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000531015		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-5UTR	ENST00000529481	ENST00000398301		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-intron	ENST00000529481	ENST00000426717		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-intron	ENST00000529481	ENST00000404783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-intron	ENST00000529481	ENST00000398304		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-intron	ENST00000529481	ENST00000530800		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
intron-intron	ENST00000529481	ENST00000472545		TCGA	LD	BRCA	TCGA-A8-A09I-01A	LRP5	chr11	68157520	+	DLG2	chr11	83676511	-
5UTR-3CDS	ENST00000586178	ENST00000450662		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
5UTR-intron	ENST00000586178	ENST00000305286		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
intron-3CDS	ENST00000415868	ENST00000450662		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
intron-intron	ENST00000415868	ENST00000305286		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
5UTR-3CDS	ENST00000376381	ENST00000450662		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
5UTR-intron	ENST00000376381	ENST00000305286		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
intron-3CDS	ENST00000593259	ENST00000450662		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
intron-intron	ENST00000593259	ENST00000305286		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MBTD1	chr17	49336504	-	EFCAB3	chr17	60451175	+
In-frame	ENST00000394287	ENST00000284116		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MED1	chr17	37579580	-	GDPD1	chr17	57335112	+
In-frame	ENST00000394287	ENST00000581140		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MED1	chr17	37579580	-	GDPD1	chr17	57335112	+
In-frame	ENST00000394287	ENST00000581276		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MED1	chr17	37579580	-	GDPD1	chr17	57335112	+
In-frame	ENST00000300651	ENST00000284116		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MED1	chr17	37579580	-	GDPD1	chr17	57335112	+
In-frame	ENST00000300651	ENST00000581140		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MED1	chr17	37579580	-	GDPD1	chr17	57335112	+
In-frame	ENST00000300651	ENST00000581276		TCGA	LD	BRCA	TCGA-A8-A09I-01A	MED1	chr17	37579580	-	GDPD1	chr17	57335112	+
5CDS-intron	ENST00000262432	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000262432	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000262432	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000262432	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000262432	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000262432	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000480046	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000480046	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000480046	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000480046	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000480046	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-intron	ENST00000480046	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
3UTR-intron	ENST00000473488	ENST00000570565		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
3UTR-intron	ENST00000473488	ENST00000442502		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
3UTR-intron	ENST00000473488	ENST00000340813		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
3UTR-intron	ENST00000473488	ENST00000451037		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
3UTR-intron	ENST00000473488	ENST00000285273		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
3UTR-intron	ENST00000473488	ENST00000571918		TCGA	LD	BRCA	TCGA-A8-A09I-01A	METTL2B	chr7	128120750	+	CA10	chr17	49739206	-
5CDS-5UTR	ENST00000233154	ENST00000474528		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000233154	ENST00000272433		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-intron	ENST00000233154	ENST00000410065		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000451463	ENST00000474528		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000451463	ENST00000272433		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-intron	ENST00000451463	ENST00000410065		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000522586	ENST00000474528		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000522586	ENST00000272433		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-intron	ENST00000522586	ENST00000410065		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000393349	ENST00000474528		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000393349	ENST00000272433		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-intron	ENST00000393349	ENST00000410065		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NCK2	chr2	106471745	+	SFXN5	chr2	73198814	-
5CDS-5UTR	ENST00000356175	ENST00000586869		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000356175	ENST00000442241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000356175	ENST00000360831		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000356175	ENST00000593176		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000358273	ENST00000586869		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000358273	ENST00000442241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000358273	ENST00000360831		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000358273	ENST00000593176		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000431387	ENST00000586869		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000431387	ENST00000442241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000431387	ENST00000360831		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
5CDS-5UTR	ENST00000431387	ENST00000593176		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000581113	ENST00000586869		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000581113	ENST00000442241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000581113	ENST00000360831		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000581113	ENST00000593176		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000417592	ENST00000586869		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000417592	ENST00000442241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000417592	ENST00000360831		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000417592	ENST00000593176		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000444181	ENST00000586869		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000444181	ENST00000442241		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000444181	ENST00000360831		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
intron-5UTR	ENST00000444181	ENST00000593176		TCGA	LD	BRCA	TCGA-A8-A09I-01A	NF1	chr17	29497015	+	NLE1	chr17	33464212	-
Frame-shit	ENST00000254066	ENST00000318217		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000254066	ENST00000394649		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000254066	ENST00000579584		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000254066	ENST00000584232		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000254066	ENST00000583621		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
Frame-shit	ENST00000394089	ENST00000318217		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000394089	ENST00000394649		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000394089	ENST00000579584		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000394089	ENST00000584232		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000394089	ENST00000583621		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
Frame-shit	ENST00000425707	ENST00000318217		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000425707	ENST00000394649		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000425707	ENST00000579584		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000425707	ENST00000584232		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000425707	ENST00000583621		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-3CDS	ENST00000394086	ENST00000318217		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-5UTR	ENST00000394086	ENST00000394649		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-5UTR	ENST00000394086	ENST00000579584		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-intron	ENST00000394086	ENST00000584232		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-intron	ENST00000394086	ENST00000583621		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-3CDS	ENST00000394081	ENST00000318217		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-5UTR	ENST00000394081	ENST00000394649		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-5UTR	ENST00000394081	ENST00000579584		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-intron	ENST00000394081	ENST00000584232		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-intron	ENST00000394081	ENST00000583621		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-3CDS	ENST00000420042	ENST00000318217		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-5UTR	ENST00000420042	ENST00000394649		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-5UTR	ENST00000420042	ENST00000579584		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-intron	ENST00000420042	ENST00000584232		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-intron	ENST00000420042	ENST00000583621		TCGA	LD	BRCA	TCGA-A8-A09I-01A	RARA	chr17	38487648	+	MYO1D	chr17	31107802	-
intron-3CDS	ENST00000299341	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000299341	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000299341	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000299341	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000299341	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3UTR	ENST00000299341	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000376352	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000376352	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000376352	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000376352	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000376352	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
5CDS-3UTR	ENST00000376352	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000405898	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000405898	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000405898	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000405898	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000405898	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3UTR	ENST00000405898	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000434978	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000434978	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000434978	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000434978	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
In-frame	ENST00000434978	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
5CDS-3UTR	ENST00000434978	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000398391	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000398391	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000398391	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000398391	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000398391	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3UTR	ENST00000398391	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53150437	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000299341	ENST00000305921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53124515	+	PPM1D	chr17	58700882	+
Frame-shit	ENST00000376352	ENST00000305921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53124515	+	PPM1D	chr17	58700882	+
intron-3CDS	ENST00000405898	ENST00000305921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53124515	+	PPM1D	chr17	58700882	+
intron-3CDS	ENST00000434978	ENST00000305921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53124515	+	PPM1D	chr17	58700882	+
intron-3CDS	ENST00000398391	ENST00000305921		TCGA	LD	BRCA	TCGA-A8-A09I-01A	STXBP4	chr17	53124515	+	PPM1D	chr17	58700882	+
5CDS-3UTR	ENST00000300896	ENST00000472779		TCGA	LD	BRCA	TCGA-A8-A09I-01A	USP32	chr17	58303404	-	RN7SL606P	chr17	58773822	+
5CDS-3UTR	ENST00000592339	ENST00000472779		TCGA	LD	BRCA	TCGA-A8-A09I-01A	USP32	chr17	58303404	-	RN7SL606P	chr17	58773822	+
intron-3UTR	ENST00000393003	ENST00000472779		TCGA	LD	BRCA	TCGA-A8-A09I-01A	USP32	chr17	58303404	-	RN7SL606P	chr17	58773822	+
intron-3UTR	ENST00000586881	ENST00000472779		TCGA	LD	BRCA	TCGA-A8-A09I-01A	USP32	chr17	58303404	-	RN7SL606P	chr17	58773822	+
3UTR-5UTR	ENST00000494757	ENST00000428826		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
3UTR-5UTR	ENST00000494757	ENST00000415827		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
3UTR-5UTR	ENST00000494757	ENST00000435174		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
3UTR-intron	ENST00000494757	ENST00000592743		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
3UTR-5UTR	ENST00000494757	ENST00000585893		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
3UTR-5UTR	ENST00000494757	ENST00000590078		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
3UTR-intron	ENST00000494757	ENST00000590783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000323571	ENST00000428826		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000323571	ENST00000415827		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000323571	ENST00000435174		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-intron	ENST00000323571	ENST00000592743		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000323571	ENST00000585893		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000323571	ENST00000590078		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-intron	ENST00000323571	ENST00000590783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000585043	ENST00000428826		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000585043	ENST00000415827		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000585043	ENST00000435174		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-intron	ENST00000585043	ENST00000592743		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000585043	ENST00000585893		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000585043	ENST00000590078		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-intron	ENST00000585043	ENST00000590783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000394103	ENST00000428826		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000394103	ENST00000415827		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000394103	ENST00000435174		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-intron	ENST00000394103	ENST00000592743		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000394103	ENST00000585893		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000394103	ENST00000590078		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-intron	ENST00000394103	ENST00000590783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000536600	ENST00000428826		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000536600	ENST00000415827		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000536600	ENST00000435174		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-intron	ENST00000536600	ENST00000592743		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000536600	ENST00000585893		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-5UTR	ENST00000536600	ENST00000590078		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-intron	ENST00000536600	ENST00000590783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000583130	ENST00000428826		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000583130	ENST00000415827		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000583130	ENST00000435174		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-intron	ENST00000583130	ENST00000592743		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000583130	ENST00000585893		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-5UTR	ENST00000583130	ENST00000590078		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
5CDS-intron	ENST00000583130	ENST00000590783		TCGA	LD	BRCA	TCGA-A8-A09I-01A	WIPF2	chr17	38421398	+	EZH1	chr17	40882936	-
intron-3CDS	ENST00000327671	ENST00000602723		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000327671	ENST00000400186		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000327671	ENST00000520002		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000327671	ENST00000602557		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000327671	ENST00000537824		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000327671	ENST00000542608		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000327671	ENST00000539096		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000327671	ENST00000523387		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518672	ENST00000602723		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518672	ENST00000400186		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518672	ENST00000520002		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518672	ENST00000602557		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518672	ENST00000537824		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518672	ENST00000542608		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000518672	ENST00000539096		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000518672	ENST00000523387		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000524021	ENST00000602723		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000524021	ENST00000400186		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000524021	ENST00000520002		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000524021	ENST00000602557		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000524021	ENST00000537824		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000524021	ENST00000542608		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000524021	ENST00000539096		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000524021	ENST00000523387		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000335589	ENST00000602723		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000335589	ENST00000400186		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000335589	ENST00000520002		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000335589	ENST00000602557		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000335589	ENST00000537824		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000335589	ENST00000542608		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000335589	ENST00000539096		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000335589	ENST00000523387		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518076	ENST00000602723		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518076	ENST00000400186		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518076	ENST00000520002		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518076	ENST00000602557		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518076	ENST00000537824		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-3CDS	ENST00000518076	ENST00000542608		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000518076	ENST00000539096		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
intron-intron	ENST00000518076	ENST00000523387		TCGA	LD	BRCA	TCGA-A8-A09K-01A	FUT10	chr8	33230162	-	CSMD1	chr8	2954559	-
In-frame	ENST00000355327	ENST00000249861		TCGA	LD	BRCA	TCGA-A8-A09K-01A	THSD4	chr15	71704162	+	THAP10	chr15	71175247	-
In-frame	ENST00000261862	ENST00000249861		TCGA	LD	BRCA	TCGA-A8-A09K-01A	THSD4	chr15	71704162	+	THAP10	chr15	71175247	-
intron-3CDS	ENST00000357769	ENST00000249861		TCGA	LD	BRCA	TCGA-A8-A09K-01A	THSD4	chr15	71704162	+	THAP10	chr15	71175247	-
intron-3CDS	ENST00000567838	ENST00000249861		TCGA	LD	BRCA	TCGA-A8-A09K-01A	THSD4	chr15	71704162	+	THAP10	chr15	71175247	-
5UTR-3CDS	ENST00000505618	ENST00000310169		TCGA	LD	BRCA	TCGA-A8-A09M-01A	RHOH	chr4	40192958	+	CHRNA9	chr4	40350899	+
5UTR-intron	ENST00000505618	ENST00000502377		TCGA	LD	BRCA	TCGA-A8-A09M-01A	RHOH	chr4	40192958	+	CHRNA9	chr4	40350899	+
intron-3CDS	ENST00000381799	ENST00000310169		TCGA	LD	BRCA	TCGA-A8-A09M-01A	RHOH	chr4	40192958	+	CHRNA9	chr4	40350899	+
intron-intron	ENST00000381799	ENST00000502377		TCGA	LD	BRCA	TCGA-A8-A09M-01A	RHOH	chr4	40192958	+	CHRNA9	chr4	40350899	+
intron-3CDS	ENST00000514143	ENST00000310169		TCGA	LD	BRCA	TCGA-A8-A09M-01A	RHOH	chr4	40192958	+	CHRNA9	chr4	40350899	+
intron-intron	ENST00000514143	ENST00000502377		TCGA	LD	BRCA	TCGA-A8-A09M-01A	RHOH	chr4	40192958	+	CHRNA9	chr4	40350899	+
In-frame	ENST00000298784	ENST00000372037		TCGA	LD	BRCA	TCGA-A8-A09N-01A	FAM35A	chr10	88912636	+	BMPR1A	chr10	88649819	+
5CDS-3UTR	ENST00000298784	ENST00000480152		TCGA	LD	BRCA	TCGA-A8-A09N-01A	FAM35A	chr10	88912636	+	BMPR1A	chr10	88649819	+
In-frame	ENST00000298786	ENST00000372037		TCGA	LD	BRCA	TCGA-A8-A09N-01A	FAM35A	chr10	88912636	+	BMPR1A	chr10	88649819	+
5CDS-3UTR	ENST00000298786	ENST00000480152		TCGA	LD	BRCA	TCGA-A8-A09N-01A	FAM35A	chr10	88912636	+	BMPR1A	chr10	88649819	+
intron-3CDS	ENST00000344442	ENST00000458497		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000344442	ENST00000177648		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000344442	ENST00000504176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3UTR	ENST00000344442	ENST00000505912		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000509061	ENST00000458497		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000509061	ENST00000177648		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000509061	ENST00000504176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3UTR	ENST00000509061	ENST00000505912		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
5UTR-3CDS	ENST00000324052	ENST00000458497		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
5UTR-3CDS	ENST00000324052	ENST00000177648		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
5UTR-3CDS	ENST00000324052	ENST00000504176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
5UTR-3UTR	ENST00000324052	ENST00000505912		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000503898	ENST00000458497		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000503898	ENST00000177648		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3CDS	ENST00000503898	ENST00000504176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
intron-3UTR	ENST00000503898	ENST00000505912		TCGA	LD	BRCA	TCGA-A8-A09N-01A	LARP7	chr4	113558759	+	ALPK1	chr4	113332983	+
In-frame	ENST00000382882	ENST00000382865		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
In-frame	ENST00000382882	ENST00000511885		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
5CDS-5UTR	ENST00000382882	ENST00000515357		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
In-frame	ENST00000411638	ENST00000382865		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
In-frame	ENST00000411638	ENST00000511885		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
5CDS-5UTR	ENST00000411638	ENST00000515357		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
5UTR-3CDS	ENST00000542778	ENST00000382865		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
5UTR-3CDS	ENST00000542778	ENST00000511885		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
5UTR-5UTR	ENST00000542778	ENST00000515357		TCGA	LD	BRCA	TCGA-A8-A09N-01A	NELFA	chr4	2010477	-	POLN	chr4	2210214	-
5CDS-5UTR	ENST00000367187	ENST00000367176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000367187	ENST00000367177		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000367187	ENST00000496057		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000367187	ENST00000367175		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000424712	ENST00000367176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000424712	ENST00000367177		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000424712	ENST00000496057		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000424712	ENST00000367175		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000496872	ENST00000367176		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000496872	ENST00000367177		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000496872	ENST00000496057		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000496872	ENST00000367175		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PIK3C2B	chr1	204433140	-	LRRN2	chr1	204589346	-
In-frame	ENST00000202556	ENST00000292539		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
Frame-shit	ENST00000202556	ENST00000529009		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
5CDS-intron	ENST00000202556	ENST00000435887		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
intron-3CDS	ENST00000423488	ENST00000292539		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
intron-3CDS	ENST00000423488	ENST00000529009		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
intron-intron	ENST00000423488	ENST00000435887		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
intron-3CDS	ENST00000555391	ENST00000292539		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
intron-3CDS	ENST00000555391	ENST00000529009		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
intron-intron	ENST00000555391	ENST00000435887		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PPP1R13B	chr14	104263708	-	PPP1R16A	chr8	145715417	+
In-frame	ENST00000313010	ENST00000398309		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000313010	ENST00000376104		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000313010	ENST00000418306		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000313010	ENST00000280241		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000313010	ENST00000543673		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000376106		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000330014		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000537455		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000524982		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000532653		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000531015		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000313010	ENST00000398301		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000313010	ENST00000426717		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000313010	ENST00000404783		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000313010	ENST00000398304		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000313010	ENST00000530800		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000313010	ENST00000472545		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000393399	ENST00000398309		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000393399	ENST00000376104		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000393399	ENST00000418306		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000393399	ENST00000280241		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000393399	ENST00000543673		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000376106		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000330014		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000537455		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000524982		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000532653		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000531015		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-5UTR	ENST00000393399	ENST00000398301		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000393399	ENST00000426717		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000393399	ENST00000404783		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000393399	ENST00000398304		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000393399	ENST00000530800		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
5CDS-intron	ENST00000393399	ENST00000472545		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000535099	ENST00000398309		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000535099	ENST00000376104		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000535099	ENST00000418306		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000535099	ENST00000280241		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000535099	ENST00000543673		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000376106		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000330014		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000537455		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000524982		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000532653		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000531015		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000535099	ENST00000398301		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000535099	ENST00000426717		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000535099	ENST00000404783		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000535099	ENST00000398304		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000535099	ENST00000530800		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000535099	ENST00000472545		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525772	ENST00000398309		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525772	ENST00000376104		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525772	ENST00000418306		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525772	ENST00000280241		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525772	ENST00000543673		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000376106		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000330014		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000537455		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000524982		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000532653		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000531015		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525772	ENST00000398301		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525772	ENST00000426717		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525772	ENST00000404783		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525772	ENST00000398304		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525772	ENST00000530800		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525772	ENST00000472545		TCGA	LD	BRCA	TCGA-A8-A09N-01A	PRCP	chr11	82611277	-	DLG2	chr11	83497835	-
In-frame	ENST00000262577	ENST00000262238		TCGA	LD	BRCA	TCGA-A8-A09N-01A	ZC3H3	chr8	144557568	-	YY1	chr14	100728641	+
Frame-shit	ENST00000448504	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
Frame-shit	ENST00000448504	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
5CDS-intron	ENST00000448504	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
5CDS-intron	ENST00000448504	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
5CDS-intron	ENST00000448504	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
5CDS-intron	ENST00000448504	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-3CDS	ENST00000452479	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-3CDS	ENST00000452479	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000452479	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000452479	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000452479	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000452479	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-3CDS	ENST00000582154	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-3CDS	ENST00000582154	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000582154	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000582154	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000582154	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-intron	ENST00000582154	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ARSG	chr17	66303852	+	CEP112	chr17	64092750	-
intron-5UTR	ENST00000382549	ENST00000399136		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000382549	ENST00000342108		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000382549	ENST00000399139		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000382549	ENST00000399137		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000382549	ENST00000399135		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000382549	ENST00000478313		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000290155	ENST00000399136		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000290155	ENST00000342108		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000290155	ENST00000399139		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000290155	ENST00000399137		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000290155	ENST00000399135		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
5CDS-intron	ENST00000290155	ENST00000478313		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000540881	ENST00000399136		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000540881	ENST00000342108		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000540881	ENST00000399139		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000540881	ENST00000399137		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000540881	ENST00000399135		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000540881	ENST00000478313		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	C21orf59	chr21	33975471	-	CLDN14	chr21	37834074	-
In-frame	ENST00000371477	ENST00000580974		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CDC5L	chr6	44397647	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000371477	ENST00000299954		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CDC5L	chr6	44397647	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000371477	ENST00000335257		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CDC5L	chr6	44397647	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000371477	ENST00000581322		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CDC5L	chr6	44397647	+	PITPNC1	chr17	65528918	+
5CDS-5UTR	ENST00000315585	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000315585	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000315585	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000315585	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266880	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266880	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266880	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000266880	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000443047	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000443047	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000443047	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000443047	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000450056	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000450056	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000450056	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000450056	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000537522	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000537522	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000537522	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000537522	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541837	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541837	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541837	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541837	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000432561	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000432561	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000432561	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
5CDS-5UTR	ENST00000432561	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541341	ENST00000393249		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541341	ENST00000261183		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541341	ENST00000393250		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541341	ENST00000552178		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CHFR	chr12	133463782	-	OSBPL8	chr12	76881398	-
Frame-shit	ENST00000430624	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000430624	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000430624	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000432329	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000432329	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000432329	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000353267	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000353267	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000353267	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000536726	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000536726	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000536726	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
intron-3CDS	ENST00000374397	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
intron-3CDS	ENST00000374397	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
intron-3CDS	ENST00000374397	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000539789	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000539789	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
Frame-shit	ENST00000539789	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
intron-3CDS	ENST00000451164	ENST00000236980		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
intron-3CDS	ENST00000451164	ENST00000402774		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
intron-3CDS	ENST00000451164	ENST00000403094		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CREB1	chr2	208435045	+	FASTKD2	chr2	207651457	+
In-frame	ENST00000350796	ENST00000402746		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000350796	ENST00000399654		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000350796	ENST00000406869		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000350796	ENST00000265854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5CDS-intron	ENST00000350796	ENST00000486340		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000396741	ENST00000402746		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000396741	ENST00000399654		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000396741	ENST00000406869		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
In-frame	ENST00000396741	ENST00000265854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5CDS-intron	ENST00000396741	ENST00000486340		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5UTR-3CDS	ENST00000488964	ENST00000402746		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5UTR-3CDS	ENST00000488964	ENST00000399654		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5UTR-3CDS	ENST00000488964	ENST00000406869		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5UTR-3CDS	ENST00000488964	ENST00000265854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
5UTR-intron	ENST00000488964	ENST00000486340		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	CYTH3	chr7	6210833	-	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000300255	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000300255	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000300255	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000300255	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
5CDS-intron	ENST00000300255	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
5CDS-intron	ENST00000300255	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000401402	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000401402	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000401402	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000401402	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
5CDS-intron	ENST00000401402	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
5CDS-intron	ENST00000401402	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000382699	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000382699	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000382699	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000382699	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
5CDS-intron	ENST00000382699	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
5CDS-intron	ENST00000382699	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
intron-3CDS	ENST00000485488	ENST00000535342		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
intron-3CDS	ENST00000485488	ENST00000392769		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
intron-3CDS	ENST00000485488	ENST00000541355		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
intron-3CDS	ENST00000485488	ENST00000537949		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
intron-intron	ENST00000485488	ENST00000317442		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
intron-intron	ENST00000485488	ENST00000580482		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	EVA1C	chr21	33840156	+	CEP112	chr17	63923807	-
Frame-shit	ENST00000504595	ENST00000306320		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000504595	ENST00000399793		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000504595	ENST00000509048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000510662	ENST00000306320		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
intron-intron	ENST00000510662	ENST00000399793		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
intron-intron	ENST00000510662	ENST00000509048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000329673	ENST00000306320		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
intron-intron	ENST00000329673	ENST00000399793		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
intron-intron	ENST00000329673	ENST00000509048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16572211	-
Frame-shit	ENST00000184956	ENST00000264664		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58132876	-	FGF10	chr5	44310632	-
intron-3CDS	ENST00000585976	ENST00000264664		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58132876	-	FGF10	chr5	44310632	-
intron-3CDS	ENST00000585712	ENST00000264664		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58132876	-	FGF10	chr5	44310632	-
Frame-shit	ENST00000184956	ENST00000392825		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5CDS-3UTR	ENST00000184956	ENST00000409237		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5CDS-intron	ENST00000184956	ENST00000487047		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
Frame-shit	ENST00000585976	ENST00000392825		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5CDS-3UTR	ENST00000585976	ENST00000409237		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5CDS-intron	ENST00000585976	ENST00000487047		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5UTR-3CDS	ENST00000585712	ENST00000392825		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5UTR-3UTR	ENST00000585712	ENST00000409237		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
5UTR-intron	ENST00000585712	ENST00000487047		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HEATR6	chr17	58156057	-	GALNT13	chr2	155306923	+
3UTR-3CDS	ENST00000394036	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
3UTR-intron	ENST00000394036	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
In-frame	ENST00000394045	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
5CDS-intron	ENST00000394045	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
In-frame	ENST00000348459	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
5CDS-intron	ENST00000348459	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
In-frame	ENST00000371332	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
5CDS-intron	ENST00000371332	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
3UTR-3CDS	ENST00000239026	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
3UTR-intron	ENST00000239026	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
intron-3CDS	ENST00000394044	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
intron-intron	ENST00000394044	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
intron-3CDS	ENST00000462057	ENST00000225235		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
intron-intron	ENST00000462057	ENST00000485048		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HELLS	chr10	96348147	+	TBC1D12	chr10	96281712	+
5CDS-intron	ENST00000348943	ENST00000558331		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000348943	ENST00000251363		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000348943	ENST00000559450		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000348943	ENST00000559336		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-intron	ENST00000348943	ENST00000595722		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-intron	ENST00000325495	ENST00000558331		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000325495	ENST00000251363		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000325495	ENST00000559450		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000325495	ENST00000559336		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
5CDS-intron	ENST00000325495	ENST00000595722		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
intron-intron	ENST00000602219	ENST00000558331		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000602219	ENST00000251363		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000602219	ENST00000559450		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000602219	ENST00000559336		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
intron-intron	ENST00000602219	ENST00000595722		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	HNRNPM	chr19	8509995	+	CERS4	chr19	8315960	+
Frame-shit	ENST00000381298	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
Frame-shit	ENST00000336909	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
3UTR-3CDS	ENST00000381287	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
Frame-shit	ENST00000502326	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
Frame-shit	ENST00000381294	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
3UTR-3CDS	ENST00000536319	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
intron-3CDS	ENST00000381293	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
intron-3CDS	ENST00000381286	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
intron-3CDS	ENST00000522633	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
intron-3CDS	ENST00000396816	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
intron-3CDS	ENST00000577363	ENST00000251636		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	IL6ST	chr5	55243321	-	DHX29	chr5	54565465	-
5UTR-3CDS	ENST00000399353	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399353	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399353	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399353	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000399353	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381318	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381318	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381318	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381318	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000381318	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381291	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381291	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381291	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381291	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000381291	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381285	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381285	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381285	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000381285	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000381285	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399367	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399367	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399367	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399367	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000399367	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399352	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399352	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399352	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399352	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000399352	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399355	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399355	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399355	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399355	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000399355	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399349	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399349	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399349	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3CDS	ENST00000399349	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
5UTR-3UTR	ENST00000399349	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399338	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399338	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399338	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399338	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3UTR	ENST00000399338	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000379960	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000379960	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000379960	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000379960	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3UTR	ENST00000379960	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000437442	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000437442	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000437442	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000437442	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3UTR	ENST00000437442	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399326	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399326	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399326	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000399326	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3UTR	ENST00000399326	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000488166	ENST00000333781		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000488166	ENST00000541890		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000488166	ENST00000398753		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3CDS	ENST00000488166	ENST00000380708		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
intron-3UTR	ENST00000488166	ENST00000466787		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	ITSN1	chr21	35015019	+	WRB	chr21	40763695	+
Frame-shit	ENST00000293618	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000293618	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000293618	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000293618	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000293618	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000293618	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000429001	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000429001	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000429001	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000429001	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000429001	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000429001	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000398473	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000398473	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000398473	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000398473	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000398473	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000398473	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518444	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518444	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518444	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518444	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518444	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000518444	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000347328	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000347328	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000347328	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000347328	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000347328	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000347328	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000522085	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000522085	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000522085	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000522085	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000522085	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000522085	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518561	ENST00000580170		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518561	ENST00000332175		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518561	ENST00000400060		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518561	ENST00000400053		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000518561	ENST00000444013		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
5CDS-intron	ENST00000518561	ENST00000578571		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	LARP4	chr12	50822873	+	PTPRM	chr18	8244056	+
Frame-shit	ENST00000233190	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
In-frame	ENST00000423725	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
Frame-shit	ENST00000457011	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
Frame-shit	ENST00000440274	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
Frame-shit	ENST00000455934	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
Frame-shit	ENST00000449699	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
Frame-shit	ENST00000432169	ENST00000334897		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NDUFS1	chr2	206992521	-	KRTAP6-2	chr21	31971215	-
5CDS-intron	ENST00000389022	ENST00000513488		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NT5M	chr17	17209957	+	ZNF652	chr17	47395345	-
5CDS-5UTR	ENST00000389022	ENST00000362063		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NT5M	chr17	17209957	+	ZNF652	chr17	47395345	-
5CDS-5UTR	ENST00000389022	ENST00000430262		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NT5M	chr17	17209957	+	ZNF652	chr17	47395345	-
intron-intron	ENST00000582909	ENST00000513488		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NT5M	chr17	17209957	+	ZNF652	chr17	47395345	-
intron-5UTR	ENST00000582909	ENST00000362063		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NT5M	chr17	17209957	+	ZNF652	chr17	47395345	-
intron-5UTR	ENST00000582909	ENST00000430262		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NT5M	chr17	17209957	+	ZNF652	chr17	47395345	-
5CDS-5UTR	ENST00000391875	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
5CDS-5UTR	ENST00000281701	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
5CDS-5UTR	ENST00000469075	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
5CDS-5UTR	ENST00000482491	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
5CDS-5UTR	ENST00000340871	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
3UTR-5UTR	ENST00000361463	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
intron-5UTR	ENST00000468673	ENST00000156109		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	GPKOW	chrX	48980105	-
In-frame	ENST00000391875	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-5UTR	ENST00000391875	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000391875	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000391875	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
In-frame	ENST00000281701	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-5UTR	ENST00000281701	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000281701	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000281701	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
In-frame	ENST00000469075	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-5UTR	ENST00000469075	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000469075	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000469075	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
Frame-shit	ENST00000482491	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-5UTR	ENST00000482491	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000482491	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000482491	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
Frame-shit	ENST00000340871	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-5UTR	ENST00000340871	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000340871	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-intron	ENST00000340871	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
3UTR-3CDS	ENST00000361463	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
3UTR-5UTR	ENST00000361463	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
3UTR-intron	ENST00000361463	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
3UTR-intron	ENST00000361463	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
intron-3CDS	ENST00000468673	ENST00000366999		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
intron-5UTR	ENST00000468673	ENST00000540251		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
intron-intron	ENST00000468673	ENST00000462283		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
intron-intron	ENST00000468673	ENST00000366998		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	NVL	chr1	224437914	-	NEK2	chr1	211847855	-
5CDS-5UTR	ENST00000395782	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395782	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395782	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395783	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395783	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395783	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000435340	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000435340	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000435340	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000255389	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000255389	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000255389	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395781	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395781	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000395781	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
intron-5UTR	ENST00000484838	ENST00000504681		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
intron-5UTR	ENST00000484838	ENST00000393354		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
intron-5UTR	ENST00000484838	ENST00000300404		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17425594	-	B4GALNT2	chr17	47218609	+
Frame-shit	ENST00000395782	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000395782	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
5CDS-intron	ENST00000395782	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
In-frame	ENST00000395783	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
In-frame	ENST00000395783	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
5CDS-intron	ENST00000395783	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000435340	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000435340	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
5CDS-intron	ENST00000435340	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000255389	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000255389	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
5CDS-intron	ENST00000255389	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000395781	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000395781	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
5CDS-intron	ENST00000395781	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
intron-3CDS	ENST00000484838	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
intron-3CDS	ENST00000484838	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
intron-intron	ENST00000484838	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PEMT	chr17	17480234	-	IGF2BP1	chr17	47118740	+
Frame-shit	ENST00000264380	ENST00000335221		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000264380	ENST00000321892		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000264380	ENST00000306378		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000264380	ENST00000424123		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
5CDS-intron	ENST00000264380	ENST00000577770		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000392202	ENST00000335221		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000392202	ENST00000321892		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000392202	ENST00000306378		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000392202	ENST00000424123		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
5CDS-intron	ENST00000392202	ENST00000577770		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000308862	ENST00000335221		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000308862	ENST00000321892		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000308862	ENST00000306378		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000308862	ENST00000424123		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
5CDS-intron	ENST00000308862	ENST00000577770		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000407449	ENST00000335221		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000407449	ENST00000321892		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000407449	ENST00000306378		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
Frame-shit	ENST00000407449	ENST00000424123		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
5CDS-intron	ENST00000407449	ENST00000577770		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
intron-3CDS	ENST00000474721	ENST00000335221		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
intron-3CDS	ENST00000474721	ENST00000321892		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
intron-3CDS	ENST00000474721	ENST00000306378		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
intron-3CDS	ENST00000474721	ENST00000424123		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
intron-intron	ENST00000474721	ENST00000577770		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PIKFYVE	chr2	209136415	+	BPTF	chr17	65924471	+
5CDS-5UTR	ENST00000379068	ENST00000518578		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379068	ENST00000338883		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379068	ENST00000359173		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379068	ENST00000469203		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379059	ENST00000518578		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379059	ENST00000338883		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379059	ENST00000359173		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
5CDS-5UTR	ENST00000379059	ENST00000469203		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
intron-5UTR	ENST00000493342	ENST00000518578		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
intron-5UTR	ENST00000493342	ENST00000338883		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
intron-5UTR	ENST00000493342	ENST00000359173		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
intron-5UTR	ENST00000493342	ENST00000469203		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	POLA1	chrX	24906239	+	MAP3K15	chrX	19428091	-
In-frame	ENST00000360663	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000360663	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000360663	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000360663	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000360663	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000360663	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000360663	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000360663	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000360663	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394828	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000394828	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000394828	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000394829	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000394829	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000394829	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000342558	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000342558	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000342558	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000545874	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000545874	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000545874	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000394822	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000394822	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000394822	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
Frame-shit	ENST00000544628	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000544628	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
5CDS-5UTR	ENST00000544628	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000351293		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000322635		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000394762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000423381		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000322680		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000305762		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-3CDS	ENST00000495897	ENST00000372765		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000495897	ENST00000472912		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
intron-5UTR	ENST00000495897	ENST00000444854		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	PPP3CB	chr10	75204483	-	CAMK2G	chr10	75620647	-
In-frame	ENST00000261263	ENST00000509603		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
In-frame	ENST00000261263	ENST00000319524		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
5CDS-5UTR	ENST00000261263	ENST00000268763		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
5CDS-5UTR	ENST00000261263	ENST00000398988		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
5CDS-intron	ENST00000261263	ENST00000581975		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
5CDS-intron	ENST00000261263	ENST00000582410		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
5CDS-intron	ENST00000261263	ENST00000578981		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAB21	chr12	72149068	+	KSR1	chr17	25877594	+
5UTR-3CDS	ENST00000353383	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
5UTR-3CDS	ENST00000353383	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
5UTR-3UTR	ENST00000353383	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000489697	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000489697	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000489697	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000261641	ENST00000290341		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000261641	ENST00000431824		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000261641	ENST00000515586		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RAI1	chr17	17627473	+	IGF2BP1	chr17	47076471	+
In-frame	ENST00000368802	ENST00000317357		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
5CDS-intron	ENST00000368802	ENST00000494935		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
In-frame	ENST00000368805	ENST00000317357		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
5CDS-intron	ENST00000368805	ENST00000494935		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
Frame-shit	ENST00000435970	ENST00000317357		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
5CDS-intron	ENST00000435970	ENST00000494935		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
In-frame	ENST00000358835	ENST00000317357		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
5CDS-intron	ENST00000358835	ENST00000494935		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
intron-3CDS	ENST00000462119	ENST00000317357		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
intron-intron	ENST00000462119	ENST00000494935		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	REV3L	chr6	111726673	-	SOBP	chr6	107854663	+
intron-5UTR	ENST00000505618	ENST00000261435		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RHOH	chr4	40198920	+	N4BP2	chr4	40098847	+
5UTR-5UTR	ENST00000381799	ENST00000261435		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RHOH	chr4	40198920	+	N4BP2	chr4	40098847	+
3UTR-5UTR	ENST00000514143	ENST00000261435		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RHOH	chr4	40198920	+	N4BP2	chr4	40098847	+
intron-3CDS	ENST00000262752	ENST00000297977		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
intron-3CDS	ENST00000262752	ENST00000506585		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
intron-3CDS	ENST00000262752	ENST00000373177		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
In-frame	ENST00000543399	ENST00000297977		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
In-frame	ENST00000543399	ENST00000506585		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
In-frame	ENST00000543399	ENST00000373177		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
intron-3CDS	ENST00000495332	ENST00000297977		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
intron-3CDS	ENST00000495332	ENST00000506585		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
intron-3CDS	ENST00000495332	ENST00000373177		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RPS6KA6	chrX	83441069	-	HDX	chrX	83588850	-
Frame-shit	ENST00000334955	ENST00000449833		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000334955	ENST00000409161		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000334955	ENST00000423696		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000334955	ENST00000338508		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000334955	ENST00000409530		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000334955	ENST00000449116		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000334955	ENST00000357171		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000334955	ENST00000468619		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000445288	ENST00000449833		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000445288	ENST00000409161		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000445288	ENST00000423696		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
Frame-shit	ENST00000445288	ENST00000338508		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000445288	ENST00000409530		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000445288	ENST00000449116		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000445288	ENST00000357171		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000445288	ENST00000468619		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	RSBN1L	chr7	77379381	+	SHANK2	chr11	70319544	-
5CDS-5UTR	ENST00000522695	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000522695	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000522695	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000522695	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000522695	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000522695	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000524300	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000524300	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000524300	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000524300	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000524300	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000524300	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000523558	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000523558	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000523558	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000523558	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000523558	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000523558	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000521210	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000521210	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000521210	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000521210	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000521210	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000521210	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000355780	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000355780	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000355780	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000355780	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000355780	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000355780	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000519961	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000519961	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000519961	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000519961	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000519961	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000519961	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000521727	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000521727	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000521727	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000521727	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000521727	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000521727	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000521451	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000521451	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000521451	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000521451	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000521451	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000521451	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000522509	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000522509	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000522509	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000522509	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000522509	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000522509	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000517542	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000517542	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-5UTR	ENST00000517542	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000517542	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000517542	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
intron-intron	ENST00000517542	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000524104	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000524104	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-5UTR	ENST00000524104	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000524104	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000524104	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5CDS-intron	ENST00000524104	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000522962	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000522962	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000522962	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000522962	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000522962	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000522962	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000521419	ENST00000416426		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000521419	ENST00000284073		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-5UTR	ENST00000521419	ENST00000322684		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000521419	ENST00000442934		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000521419	ENST00000579180		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
5UTR-intron	ENST00000521419	ENST00000579505		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	STAU2	chr8	74650519	-	MSI2	chr17	55334459	+
In-frame	ENST00000321105	ENST00000184956		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
In-frame	ENST00000321105	ENST00000585976		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
5CDS-intron	ENST00000321105	ENST00000585712		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-3CDS	ENST00000540524	ENST00000184956		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-3CDS	ENST00000540524	ENST00000585976		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-intron	ENST00000540524	ENST00000585712		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
Frame-shit	ENST00000542570	ENST00000184956		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
Frame-shit	ENST00000542570	ENST00000585976		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
5CDS-intron	ENST00000542570	ENST00000585712		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-3CDS	ENST00000582230	ENST00000184956		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-3CDS	ENST00000582230	ENST00000585976		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-intron	ENST00000582230	ENST00000585712		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TOP3A	chr17	18205199	-	HEATR6	chr17	58151247	-
intron-3CDS	ENST00000489714	ENST00000360093		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-3CDS	ENST00000489714	ENST00000283254		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-3CDS	ENST00000489714	ENST00000409101		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-intron	ENST00000489714	ENST00000540861		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-intron	ENST00000489714	ENST00000465043		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-3CDS	ENST00000536175	ENST00000360093		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-3CDS	ENST00000536175	ENST00000283254		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-3CDS	ENST00000536175	ENST00000409101		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-intron	ENST00000536175	ENST00000540861		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
intron-intron	ENST00000536175	ENST00000465043		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
Frame-shit	ENST00000243344	ENST00000360093		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
Frame-shit	ENST00000243344	ENST00000283254		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
Frame-shit	ENST00000243344	ENST00000409101		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
5CDS-intron	ENST00000243344	ENST00000540861		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
5CDS-intron	ENST00000243344	ENST00000465043		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	TTC21B	chr2	166767837	-	SCN3A	chr2	165956934	-
Frame-shit	ENST00000333781	ENST00000407008		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000333781	ENST00000583517		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000333781	ENST00000582037		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
Frame-shit	ENST00000541890	ENST00000407008		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000541890	ENST00000583517		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000541890	ENST00000582037		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5UTR-3CDS	ENST00000398753	ENST00000407008		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5UTR-intron	ENST00000398753	ENST00000583517		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5UTR-intron	ENST00000398753	ENST00000582037		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
intron-3CDS	ENST00000380708	ENST00000407008		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
intron-intron	ENST00000380708	ENST00000583517		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
intron-intron	ENST00000380708	ENST00000582037		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
intron-3CDS	ENST00000466787	ENST00000407008		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
intron-intron	ENST00000466787	ENST00000583517		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
intron-intron	ENST00000466787	ENST00000582037		TCGA	LD	BRCA	TCGA-A8-A09Q-01A	WRB	chr21	40752412	+	NLK	chr17	26490569	+
5UTR-intron	ENST00000395425	ENST00000261699		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000395425	ENST00000267436		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000395425	ENST00000421284		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000395425	ENST00000555423		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000395425	ENST00000555610		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000395425	ENST00000556393		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000247191	ENST00000261699		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000247191	ENST00000267436		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000247191	ENST00000421284		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000247191	ENST00000555423		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000247191	ENST00000555610		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
5UTR-intron	ENST00000247191	ENST00000556393		TCGA	LD	BRCA	TCGA-A8-A09R-01A	DLGAP5	chr14	55658181	-	L2HGDH	chr14	50713971	-
intron-3CDS	ENST00000542227	ENST00000267512		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-3CDS	ENST00000542227	ENST00000533601		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-5UTR	ENST00000542227	ENST00000436278		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-5UTR	ENST00000542227	ENST00000426039		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-3CDS	ENST00000447296	ENST00000267512		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-3CDS	ENST00000447296	ENST00000533601		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-5UTR	ENST00000447296	ENST00000436278		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-5UTR	ENST00000447296	ENST00000426039		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
Frame-shit	ENST00000246166	ENST00000267512		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
Frame-shit	ENST00000246166	ENST00000533601		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
5CDS-5UTR	ENST00000246166	ENST00000436278		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
5CDS-5UTR	ENST00000246166	ENST00000426039		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-3CDS	ENST00000555742	ENST00000267512		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-3CDS	ENST00000555742	ENST00000533601		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-5UTR	ENST00000555742	ENST00000436278		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
intron-5UTR	ENST00000555742	ENST00000426039		TCGA	LD	BRCA	TCGA-A8-A09R-01A	FNTB	chr14	65453815	+	RAB15	chr14	65419289	-
5UTR-3CDS	ENST00000482108	ENST00000297268		TCGA	LD	BRCA	TCGA-A8-A09R-01A	PEG10	chr7	94285892	+	COL1A2	chr7	94029508	+
5UTR-3CDS	ENST00000488574	ENST00000297268		TCGA	LD	BRCA	TCGA-A8-A09R-01A	PEG10	chr7	94285892	+	COL1A2	chr7	94029508	+
intron-3CDS	ENST00000465184	ENST00000297268		TCGA	LD	BRCA	TCGA-A8-A09R-01A	PEG10	chr7	94285892	+	COL1A2	chr7	94029508	+
Frame-shit	ENST00000360631	ENST00000524365		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000360631	ENST00000521255		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000360631	ENST00000400389		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000255448	ENST00000524365		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000255448	ENST00000521255		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000255448	ENST00000400389		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000379892	ENST00000524365		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000379892	ENST00000521255		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
Frame-shit	ENST00000379892	ENST00000400389		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
intron-3CDS	ENST00000379893	ENST00000524365		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
intron-3CDS	ENST00000379893	ENST00000521255		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
intron-3CDS	ENST00000379893	ENST00000400389		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
intron-3CDS	ENST00000460982	ENST00000524365		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
intron-3CDS	ENST00000460982	ENST00000521255		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
intron-3CDS	ENST00000460982	ENST00000400389		TCGA	LD	BRCA	TCGA-A8-A09V-01A	DCLK1	chr13	36686006	-	SERPINE3	chr13	51935414	+
5CDS-3UTR	ENST00000392894	ENST00000468220		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-intron	ENST00000392894	ENST00000264734		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-intron	ENST00000392894	ENST00000456423		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-3UTR	ENST00000344229	ENST00000468220		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-intron	ENST00000344229	ENST00000264734		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-intron	ENST00000344229	ENST00000456423		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-3UTR	ENST00000361785	ENST00000468220		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-intron	ENST00000361785	ENST00000264734		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
5CDS-intron	ENST00000361785	ENST00000456423		TCGA	LD	BRCA	TCGA-A8-A09X-01A	RNF13	chr3	149639014	+	CLDN16	chr3	190088682	+
3UTR-5UTR	ENST00000296043	ENST00000297258		TCGA	LD	BRCA	TCGA-A8-A09X-01A	SHROOM3	chr4	77701799	+	FABP5	chr8	82192771	+
3UTR-intron	ENST00000296043	ENST00000396359		TCGA	LD	BRCA	TCGA-A8-A09X-01A	SHROOM3	chr4	77701799	+	FABP5	chr8	82192771	+
intron-5UTR	ENST00000473602	ENST00000297258		TCGA	LD	BRCA	TCGA-A8-A09X-01A	SHROOM3	chr4	77701799	+	FABP5	chr8	82192771	+
intron-intron	ENST00000473602	ENST00000396359		TCGA	LD	BRCA	TCGA-A8-A09X-01A	SHROOM3	chr4	77701799	+	FABP5	chr8	82192771	+
5UTR-intron	ENST00000333090	ENST00000436072		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	TSKU	chr11	76494448	+	SFRP4	chr7	37966376	-
intron-intron	ENST00000527881	ENST00000436072		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	TSKU	chr11	76494448	+	SFRP4	chr7	37966376	-
Frame-shit	ENST00000370706	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000370706	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000370706	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000370706	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000357489	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000357489	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000357489	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000357489	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000491832	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000491832	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000491832	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000491832	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000370708	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370708	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370708	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370708	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000370702	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370702	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370702	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370702	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000370710	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370710	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370710	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000370710	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000510989	ENST00000319023		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000510989	ENST00000539574		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000510989	ENST00000530055		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
intron-intron	ENST00000510989	ENST00000526039		TCGA	LD	BRCA	TCGA-A8-A0A4-01A	ZNF451	chr6	56993638	+	NADSYN1	chr11	71174478	+
5CDS-3UTR	ENST00000253925	ENST00000398645		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000253925	ENST00000529006		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000253925	ENST00000526258		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000253925	ENST00000308783		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000253925	ENST00000530342		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000389547	ENST00000398645		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000389547	ENST00000529006		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000389547	ENST00000526258		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000389547	ENST00000308783		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000389547	ENST00000530342		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
intron-3UTR	ENST00000530548	ENST00000398645		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
intron-3UTR	ENST00000530548	ENST00000529006		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
intron-3UTR	ENST00000530548	ENST00000526258		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
intron-intron	ENST00000530548	ENST00000308783		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
intron-intron	ENST00000530548	ENST00000530342		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	PPFIA1	chr11	70208594	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000349139	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000349139	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000349139	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000349139	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000369441	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000369441	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000369441	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000369441	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000471680	ENST00000441339		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000471680	ENST00000308946		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000471680	ENST00000535407		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000471680	ENST00000541137		TCGA	LD	BRCA	TCGA-A8-A0A6-01A	WDR3	chr1	118499819	+	MYEOV	chr11	69156278	+
5UTR-5UTR	ENST00000393249	ENST00000301659		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	OSBPL8	chr12	76953177	-	GSDMA	chr17	38121936	+
5UTR-5UTR	ENST00000261183	ENST00000301659		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	OSBPL8	chr12	76953177	-	GSDMA	chr17	38121936	+
5UTR-5UTR	ENST00000393250	ENST00000301659		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	OSBPL8	chr12	76953177	-	GSDMA	chr17	38121936	+
5UTR-5UTR	ENST00000552178	ENST00000301659		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	OSBPL8	chr12	76953177	-	GSDMA	chr17	38121936	+
5UTR-5UTR	ENST00000407597	ENST00000380861		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000407597	ENST00000454666		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000407597	ENST00000466248		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-5UTR	ENST00000424279	ENST00000380861		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000424279	ENST00000454666		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000424279	ENST00000466248		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-5UTR	ENST00000536365	ENST00000380861		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000536365	ENST00000454666		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000536365	ENST00000466248		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-5UTR	ENST00000380961	ENST00000380861		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000380961	ENST00000454666		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000380961	ENST00000466248		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-5UTR	ENST00000217964	ENST00000380861		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000217964	ENST00000454666		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
5UTR-intron	ENST00000217964	ENST00000466248		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
intron-5UTR	ENST00000497555	ENST00000380861		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
intron-intron	ENST00000497555	ENST00000454666		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
intron-intron	ENST00000497555	ENST00000466248		TCGA	LD	BRCA	TCGA-A8-A0A7-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10031485	+
Frame-shit	ENST00000407721	ENST00000353364		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
Frame-shit	ENST00000407721	ENST00000280377		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
Frame-shit	ENST00000407721	ENST00000393654		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
5CDS-intron	ENST00000407721	ENST00000550632		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
5CDS-intron	ENST00000407721	ENST00000312635		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
Frame-shit	ENST00000355527	ENST00000353364		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
Frame-shit	ENST00000355527	ENST00000280377		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
Frame-shit	ENST00000355527	ENST00000393654		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
5CDS-intron	ENST00000355527	ENST00000550632		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
5CDS-intron	ENST00000355527	ENST00000312635		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	DHCR7	chr11	71148858	-	USP15	chr12	62777621	+
In-frame	ENST00000228705	ENST00000309283		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
In-frame	ENST00000228705	ENST00000266682		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
In-frame	ENST00000228705	ENST00000552192		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000228705	ENST00000551388		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000228705	ENST00000450363		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
intron-3CDS	ENST00000551214	ENST00000309283		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
intron-3CDS	ENST00000551214	ENST00000266682		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
intron-3CDS	ENST00000551214	ENST00000552192		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
intron-intron	ENST00000551214	ENST00000551388		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
intron-intron	ENST00000551214	ENST00000450363		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	PPM1H	chr12	63131282	-	SLC6A15	chr12	85264449	-
Frame-shit	ENST00000361756	ENST00000393799		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000530427		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000393800		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000534534		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000524845		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000265637		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000524904		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000393801		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000265636		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000529710		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000361756	ENST00000527403		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-3CDS	ENST00000533380	ENST00000393799		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000530427		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000393800		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000534534		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000524845		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000265637		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000524904		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000393801		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000265636		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000529710		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
intron-intron	ENST00000533380	ENST00000527403		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
Frame-shit	ENST00000393713	ENST00000393799		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000530427		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000393800		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000534534		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000524845		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000265637		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000524904		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000393801		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000265636		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000529710		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000393713	ENST00000527403		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-3CDS	ENST00000490867	ENST00000393799		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000530427		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000393800		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000534534		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000524845		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000265637		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000524904		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000393801		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000265636		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000529710		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
3UTR-intron	ENST00000490867	ENST00000527403		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
Frame-shit	ENST00000545854	ENST00000393799		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000530427		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000393800		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000534534		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000524845		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000265637		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000524904		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000393801		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000265636		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000529710		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000545854	ENST00000527403		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
Frame-shit	ENST00000530137	ENST00000393799		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000530427		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000393800		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000534534		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000524845		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000265637		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000524904		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000393801		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000265636		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000529710		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5CDS-intron	ENST00000530137	ENST00000527403		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	RNF121	chr11	71701763	+	PPP6R3	chr11	68331771	+
5UTR-intron	ENST00000249647	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000249647	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
3UTR-intron	ENST00000566141	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
3UTR-intron	ENST00000566141	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000564153	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000564153	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000349777	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000349777	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000567094	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5UTR-intron	ENST00000567094	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
intron-intron	ENST00000397138	ENST00000465301		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
intron-intron	ENST00000397138	ENST00000540313		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SNAP23	chr15	42787911	+	RGAG1	chrX	109688351	+
5CDS-5UTR	ENST00000355086	ENST00000340149		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000355086	ENST00000361507		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000355086	ENST00000526030		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000357825	ENST00000340149		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000357825	ENST00000361507		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000357825	ENST00000526030		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000543397	ENST00000340149		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000543397	ENST00000361507		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000543397	ENST00000526030		TCGA	LD	BRCA	TCGA-A8-A0A9-01A	SRGAP1	chr12	64480806	+	GAB2	chr11	77991947	-
5CDS-intron	ENST00000316308	ENST00000335815		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	CLK4	chr5	178035377	-	ZNF354A	chr5	178124696	-
intron-intron	ENST00000522749	ENST00000335815		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	CLK4	chr5	178035377	-	ZNF354A	chr5	178124696	-
intron-intron	ENST00000520957	ENST00000335815		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	CLK4	chr5	178035377	-	ZNF354A	chr5	178124696	-
intron-3CDS	ENST00000546309	ENST00000580974		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000546309	ENST00000299954		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000546309	ENST00000335257		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000546309	ENST00000581322		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000397244	ENST00000580974		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
Frame-shit	ENST00000397244	ENST00000299954		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
Frame-shit	ENST00000397244	ENST00000335257		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000397244	ENST00000581322		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000388870	ENST00000580974		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
Frame-shit	ENST00000388870	ENST00000299954		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
Frame-shit	ENST00000388870	ENST00000335257		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000388870	ENST00000581322		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000297792	ENST00000580974		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
Frame-shit	ENST00000297792	ENST00000299954		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
Frame-shit	ENST00000297792	ENST00000335257		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000297792	ENST00000581322		TCGA	LD	BRCA	TCGA-A8-A0AD-01A	KDM1B	chr6	18171710	+	PITPNC1	chr17	65574302	+
intron-3UTR	ENST00000605917	ENST00000589109		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CASC15	chr6	22020771	+	RIT2	chr18	40323685	-
intron-3UTR	ENST00000605917	ENST00000326695		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CASC15	chr6	22020771	+	RIT2	chr18	40323685	-
intron-3UTR	ENST00000605917	ENST00000590910		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CASC15	chr6	22020771	+	RIT2	chr18	40323685	-
intron-intron	ENST00000605917	ENST00000282028		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CASC15	chr6	22020771	+	RIT2	chr18	40323685	-
Frame-shit	ENST00000331006	ENST00000536122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
Frame-shit	ENST00000331006	ENST00000268699		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
5CDS-3UTR	ENST00000331006	ENST00000540721		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3CDS	ENST00000353379	ENST00000536122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3CDS	ENST00000353379	ENST00000268699		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3UTR	ENST00000353379	ENST00000540721		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3CDS	ENST00000505473	ENST00000536122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3CDS	ENST00000505473	ENST00000268699		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3UTR	ENST00000505473	ENST00000540721		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3CDS	ENST00000514965	ENST00000536122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3CDS	ENST00000514965	ENST00000268699		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
intron-3UTR	ENST00000514965	ENST00000540721		TCGA	LD	BRCA	TCGA-AC-A23C-01A	CDK10	chr16	89748904	+	GAS8	chr16	90097707	+
3UTR-3CDS	ENST00000450514	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-3CDS	ENST00000450514	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-intron	ENST00000450514	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-3CDS	ENST00000422366	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-3CDS	ENST00000422366	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-intron	ENST00000422366	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-3CDS	ENST00000427196	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-3CDS	ENST00000427196	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
3UTR-intron	ENST00000427196	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000442228	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000442228	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000442228	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000425999	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000425999	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000425999	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000425404	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000425404	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000425404	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000427938	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000427938	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000427938	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000450532	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000450532	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000450532	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000422493	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000422493	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000422493	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000440216	ENST00000373122		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-3CDS	ENST00000440216	ENST00000373113		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
intron-intron	ENST00000440216	ENST00000338469		TCGA	LD	BRCA	TCGA-AC-A23C-01A	HCG25	chr6	33219483	+	TREM2	chr6	41126804	-
5UTR-5UTR	ENST00000262094	ENST00000477592		TCGA	LD	BRCA	TCGA-AC-A23C-01A	RAB27B	chr18	52495931	+	PXDC1	chr6	3727896	-
5UTR-5UTR	ENST00000262094	ENST00000380283		TCGA	LD	BRCA	TCGA-AC-A23C-01A	RAB27B	chr18	52495931	+	PXDC1	chr6	3727896	-
3UTR-5UTR	ENST00000586594	ENST00000477592		TCGA	LD	BRCA	TCGA-AC-A23C-01A	RAB27B	chr18	52495931	+	PXDC1	chr6	3727896	-
3UTR-5UTR	ENST00000586594	ENST00000380283		TCGA	LD	BRCA	TCGA-AC-A23C-01A	RAB27B	chr18	52495931	+	PXDC1	chr6	3727896	-
In-frame	ENST00000449592	ENST00000355329		TCGA	LD	BRCA	TCGA-AC-A23C-01A	TMEM120B	chr12	122150870	+	MORN3	chr12	122097254	-
intron-3CDS	ENST00000540377	ENST00000355329		TCGA	LD	BRCA	TCGA-AC-A23C-01A	TMEM120B	chr12	122150870	+	MORN3	chr12	122097254	-
intron-3CDS	ENST00000538055	ENST00000355329		TCGA	LD	BRCA	TCGA-AC-A23C-01A	TMEM120B	chr12	122150870	+	MORN3	chr12	122097254	-
intron-3CDS	ENST00000506693	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-3CDS	ENST00000506693	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-3CDS	ENST00000506693	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-intron	ENST00000506693	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-intron	ENST00000506693	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000358149	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000358149	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000358149	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000358149	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000358149	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-3CDS	ENST00000512315	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-3CDS	ENST00000512315	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-3CDS	ENST00000512315	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-intron	ENST00000512315	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
intron-intron	ENST00000512315	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000503425	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000503425	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000503425	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000503425	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000503425	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000261948	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000261948	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000261948	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000261948	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000261948	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000511834	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000511834	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000511834	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000511834	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000511834	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000503039	ENST00000354179		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000503039	ENST00000439151		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000503039	ENST00000347982		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000503039	ENST00000361032		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
5CDS-intron	ENST00000503039	ENST00000511258		TCGA	LD	BRCA	TCGA-AC-A23C-01A	ZNF346	chr5	176471534	+	NSD1	chr5	176631121	+
In-frame	ENST00000529230	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000529230	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000529230	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000529230	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000529230	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000529230	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000415402	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000415402	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000415402	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000415402	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000415402	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000415402	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000312055	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000312055	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000312055	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000312055	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000312055	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000312055	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000354558	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
In-frame	ENST00000354558	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000354558	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000354558	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000354558	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000354558	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000532321	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000532321	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000532321	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000532321	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
intron-intron	ENST00000532321	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
intron-intron	ENST00000532321	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A23H-01A	CKAP5	chr11	46780473	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000574590	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000574590	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000574590	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000574590	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000574590	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000575318	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000575318	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000575318	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000575318	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000575318	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000572904	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000572904	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000572904	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000572904	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000572904	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000262419	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000262419	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000262419	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000262419	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000262419	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000432791	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000432791	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000432791	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000432791	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000432791	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5UTR-5UTR	ENST00000393476	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5UTR-5UTR	ENST00000393476	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5UTR-5UTR	ENST00000393476	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5UTR-intron	ENST00000393476	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
5UTR-intron	ENST00000393476	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000576248	ENST00000304046		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000576248	ENST00000579695		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000576248	ENST00000394169		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000576248	ENST00000584220		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000576248	ENST00000582052		TCGA	LD	BRCA	TCGA-AC-A23H-01A	KANSL1	chr17	44144915	-	ORMDL3	chr17	38080478	-
intron-3CDS	ENST00000449833	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000449833	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000409161	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000409161	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000423696	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000423696	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000338508	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000338508	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000409530	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000409530	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000449116	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000449116	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000357171	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000357171	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000468619	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000468619	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A23H-01A	SHANK2	chr11	70935743	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000339021	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000339021	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000339021	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000355803	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000355803	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000355803	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000325437	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000325437	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000325437	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000397514	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000397514	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000397514	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000397515	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000397515	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000397515	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000403747	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000403747	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
5UTR-3CDS	ENST00000403747	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000566587	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000566587	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000566587	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000406620	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000406620	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000406620	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000402301	ENST00000348261		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000402301	ENST00000358590		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
intron-3CDS	ENST00000402301	ENST00000565831		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBE2I	chr16	1359774	+	CACNA1H	chr16	1267919	+
In-frame	ENST00000416753	ENST00000334746		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
In-frame	ENST00000416753	ENST00000554565		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
In-frame	ENST00000416753	ENST00000393170		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
5CDS-intron	ENST00000416753	ENST00000298896		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
5CDS-intron	ENST00000416753	ENST00000555525		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
In-frame	ENST00000013070	ENST00000334746		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
In-frame	ENST00000013070	ENST00000554565		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
In-frame	ENST00000013070	ENST00000393170		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
5CDS-intron	ENST00000013070	ENST00000298896		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
5CDS-intron	ENST00000013070	ENST00000555525		TCGA	LD	BRCA	TCGA-AC-A23H-01A	UBR7	chr14	93686757	+	BTBD7	chr14	93723701	-
In-frame	ENST00000300896	ENST00000411458		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000300896	ENST00000539851		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000300896	ENST00000377702		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000300896	ENST00000438980		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000300896	ENST00000313074		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-3CDS	ENST00000592339	ENST00000411458		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000592339	ENST00000539851		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000592339	ENST00000377702		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000592339	ENST00000438980		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000592339	ENST00000313074		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
In-frame	ENST00000393003	ENST00000411458		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000393003	ENST00000539851		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000393003	ENST00000377702		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000393003	ENST00000438980		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000393003	ENST00000313074		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-3CDS	ENST00000586881	ENST00000411458		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000586881	ENST00000539851		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000586881	ENST00000377702		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000586881	ENST00000438980		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
intron-5UTR	ENST00000586881	ENST00000313074		TCGA	LD	BRCA	TCGA-AC-A23H-01A	USP32	chr17	58469243	-	GPR137	chr11	64053982	+
5CDS-intron	ENST00000358823	ENST00000260502		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-5UTR	ENST00000358823	ENST00000370244		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358823	ENST00000370243		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358823	ENST00000370247		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358823	ENST00000539242		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358823	ENST00000466632		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000413307	ENST00000260502		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-5UTR	ENST00000413307	ENST00000370244		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000413307	ENST00000370243		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000413307	ENST00000370247		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000413307	ENST00000539242		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000413307	ENST00000466632		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000236925	ENST00000260502		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-5UTR	ENST00000236925	ENST00000370244		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000236925	ENST00000370243		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000236925	ENST00000370247		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000236925	ENST00000539242		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000236925	ENST00000466632		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAMSAP2	chr1	200784772	+	BCAR3	chr1	94171698	-
In-frame	ENST00000341394	ENST00000241052		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000341394	ENST00000534710		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
In-frame	ENST00000389645	ENST00000241052		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000389645	ENST00000534710		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
In-frame	ENST00000532820	ENST00000241052		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000532820	ENST00000534710		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
In-frame	ENST00000530820	ENST00000241052		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000530820	ENST00000534710		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
In-frame	ENST00000529307	ENST00000241052		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000529307	ENST00000534710		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
intron-3CDS	ENST00000533657	ENST00000241052		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
intron-intron	ENST00000533657	ENST00000534710		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	CAPRIN1	chr11	34093534	+	CAT	chr11	34470739	+
Frame-shit	ENST00000304733	ENST00000359315		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	DBNDD1	chr16	90075192	-	TPGS1	chr19	518889	+
Frame-shit	ENST00000002501	ENST00000359315		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	DBNDD1	chr16	90075192	-	TPGS1	chr19	518889	+
Frame-shit	ENST00000392973	ENST00000359315		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	DBNDD1	chr16	90075192	-	TPGS1	chr19	518889	+
Frame-shit	ENST00000568838	ENST00000359315		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	DBNDD1	chr16	90075192	-	TPGS1	chr19	518889	+
In-frame	ENST00000264741	ENST00000443503		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	ITGA9	chr3	37523098	+	CTDSPL	chr3	37988548	+
In-frame	ENST00000264741	ENST00000273179		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	ITGA9	chr3	37523098	+	CTDSPL	chr3	37988548	+
5CDS-intron	ENST00000264741	ENST00000310189		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	ITGA9	chr3	37523098	+	CTDSPL	chr3	37988548	+
In-frame	ENST00000422441	ENST00000443503		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	ITGA9	chr3	37523098	+	CTDSPL	chr3	37988548	+
In-frame	ENST00000422441	ENST00000273179		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	ITGA9	chr3	37523098	+	CTDSPL	chr3	37988548	+
5CDS-intron	ENST00000422441	ENST00000310189		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	ITGA9	chr3	37523098	+	CTDSPL	chr3	37988548	+
Frame-shit	ENST00000360614	ENST00000434248		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000360614	ENST00000221355		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000360614	ENST00000598845		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
Frame-shit	ENST00000585374	ENST00000434248		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000585374	ENST00000221355		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000585374	ENST00000598845		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
Frame-shit	ENST00000593119	ENST00000434248		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000593119	ENST00000221355		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000593119	ENST00000598845		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
Frame-shit	ENST00000540670	ENST00000434248		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000540670	ENST00000221355		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000540670	ENST00000598845		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
Frame-shit	ENST00000590729	ENST00000434248		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000590729	ENST00000221355		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
5CDS-5UTR	ENST00000590729	ENST00000598845		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
intron-3CDS	ENST00000590511	ENST00000434248		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
intron-5UTR	ENST00000590511	ENST00000221355		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
intron-5UTR	ENST00000590511	ENST00000598845		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	LONP1	chr19	5707071	-	ZNF780B	chr19	40542533	-
Frame-shit	ENST00000380737	ENST00000346798		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000380737	ENST00000354192		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000380737	ENST00000348990		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000380737	ENST00000357903		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000380737	ENST00000358918		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000380737	ENST00000359726		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000380737	ENST00000448388		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000380737	ENST00000440126		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000380737	ENST00000439274		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000380737	ENST00000474136		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
Frame-shit	ENST00000315985	ENST00000346798		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000315985	ENST00000354192		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000315985	ENST00000348990		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000315985	ENST00000357903		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000315985	ENST00000358918		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000315985	ENST00000359726		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000315985	ENST00000448388		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000315985	ENST00000440126		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-intron	ENST00000315985	ENST00000439274		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000315985	ENST00000474136		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-3CDS	ENST00000523473	ENST00000346798		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-intron	ENST00000523473	ENST00000354192		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-intron	ENST00000523473	ENST00000348990		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-intron	ENST00000523473	ENST00000357903		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-intron	ENST00000523473	ENST00000358918		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-intron	ENST00000523473	ENST00000359726		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-5UTR	ENST00000523473	ENST00000448388		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-5UTR	ENST00000523473	ENST00000440126		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-intron	ENST00000523473	ENST00000439274		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
3UTR-5UTR	ENST00000523473	ENST00000474136		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	PPP2R2A	chr8	26151256	+	APP	chr21	27484463	-
5CDS-5UTR	ENST00000366787	ENST00000397722		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
5CDS-5UTR	ENST00000366787	ENST00000382940		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
5CDS-5UTR	ENST00000366787	ENST00000219479		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
5CDS-5UTR	ENST00000366787	ENST00000450036		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
intron-5UTR	ENST00000488355	ENST00000397722		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
intron-5UTR	ENST00000488355	ENST00000382940		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
intron-5UTR	ENST00000488355	ENST00000219479		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
intron-5UTR	ENST00000488355	ENST00000450036		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	THBS2	chr6	169646292	-	NME4	chr16	448990	+
5UTR-3CDS	ENST00000536252	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000536252	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000536252	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-intron	ENST00000536252	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
In-frame	ENST00000545103	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
In-frame	ENST00000545103	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
In-frame	ENST00000545103	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5CDS-intron	ENST00000545103	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000540348	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000540348	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000540348	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-intron	ENST00000540348	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
In-frame	ENST00000543944	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
In-frame	ENST00000543944	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
In-frame	ENST00000543944	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5CDS-intron	ENST00000543944	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000297661	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000297661	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000297661	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-intron	ENST00000297661	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000379186	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000379186	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000379186	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-intron	ENST00000379186	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000359544	ENST00000379540		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000359544	ENST00000379521		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
intron-3CDS	ENST00000359544	ENST00000318524		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
intron-intron	ENST00000359544	ENST00000463421		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	UBAP1	chr9	34179238	+	NFX1	chr9	33338508	+
5UTR-3CDS	ENST00000272746	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-5UTR	ENST00000272746	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000272746	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000272746	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000272746	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-3CDS	ENST00000359761	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-5UTR	ENST00000359761	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000359761	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000359761	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000359761	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-3CDS	ENST00000409415	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-5UTR	ENST00000409415	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000409415	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000409415	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
5UTR-intron	ENST00000409415	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-3CDS	ENST00000392547	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-5UTR	ENST00000392547	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000392547	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000392547	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000392547	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-3CDS	ENST00000392546	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-5UTR	ENST00000392546	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000392546	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000392546	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000392546	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-3CDS	ENST00000409891	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-5UTR	ENST00000409891	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000409891	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000409891	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000409891	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-3CDS	ENST00000467149	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-5UTR	ENST00000467149	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000467149	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000467149	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000467149	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-3CDS	ENST00000410117	ENST00000409900		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-5UTR	ENST00000410117	ENST00000488080		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000410117	ENST00000409156		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000410117	ENST00000295497		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-intron	ENST00000410117	ENST00000409597		TCGA	LD	BRCA	TCGA-AC-A2BK-01A	WIPF1	chr2	175547502	-	CHN1	chr2	175711685	-
intron-5UTR	ENST00000462484	ENST00000298552		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000462484	ENST00000545250		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000462484	ENST00000440111		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000462484	ENST00000403810		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000462484	ENST00000475903		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000334856	ENST00000298552		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000334856	ENST00000545250		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000334856	ENST00000440111		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000334856	ENST00000403810		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000334856	ENST00000475903		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
5CDS-5UTR	ENST00000460843	ENST00000298552		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
5CDS-5UTR	ENST00000460843	ENST00000545250		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
5CDS-5UTR	ENST00000460843	ENST00000440111		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
5CDS-5UTR	ENST00000460843	ENST00000403810		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
5CDS-5UTR	ENST00000460843	ENST00000475903		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000371394	ENST00000298552		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000371394	ENST00000545250		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000371394	ENST00000440111		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000371394	ENST00000403810		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
intron-5UTR	ENST00000371394	ENST00000475903		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	EHMT1	chr9	140712590	+	TSC1	chr9	135804339	-
In-frame	ENST00000468410	ENST00000440650		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
In-frame	ENST00000468410	ENST00000496166		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
Frame-shit	ENST00000468410	ENST00000359195		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
5CDS-intron	ENST00000468410	ENST00000466738		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
In-frame	ENST00000222574	ENST00000440650		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
In-frame	ENST00000222574	ENST00000496166		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
Frame-shit	ENST00000222574	ENST00000359195		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
5CDS-intron	ENST00000222574	ENST00000466738		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
In-frame	ENST00000485846	ENST00000440650		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
In-frame	ENST00000485846	ENST00000496166		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
Frame-shit	ENST00000485846	ENST00000359195		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
5CDS-intron	ENST00000485846	ENST00000466738		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
3UTR-3CDS	ENST00000461963	ENST00000440650		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
3UTR-3CDS	ENST00000461963	ENST00000496166		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
3UTR-3CDS	ENST00000461963	ENST00000359195		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
3UTR-intron	ENST00000461963	ENST00000466738		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	HBP1	chr7	106826917	+	PIK3CG	chr7	106545554	+
intron-3CDS	ENST00000255078	ENST00000534749		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000255078	ENST00000436757		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000255078	ENST00000356404		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-intron	ENST00000255078	ENST00000526450		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000539224	ENST00000534749		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000539224	ENST00000436757		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000539224	ENST00000356404		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-intron	ENST00000539224	ENST00000526450		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000541229	ENST00000534749		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000541229	ENST00000436757		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-3CDS	ENST00000541229	ENST00000356404		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
intron-intron	ENST00000541229	ENST00000526450		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	IGHMBP2	chr11	68672398	+	PITPNM1	chr11	67259648	-
5UTR-3CDS	ENST00000450904	ENST00000339514		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000450904	ENST00000392318		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000450904	ENST00000304164		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000450904	ENST00000392316		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000450904	ENST00000439065		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-intron	ENST00000450904	ENST00000496992		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000362034	ENST00000339514		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000362034	ENST00000392318		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000362034	ENST00000304164		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000362034	ENST00000392316		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
intron-3CDS	ENST00000362034	ENST00000439065		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
intron-intron	ENST00000362034	ENST00000496992		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000567045	ENST00000339514		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000567045	ENST00000392318		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000567045	ENST00000304164		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000567045	ENST00000392316		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-3CDS	ENST00000567045	ENST00000439065		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
5UTR-intron	ENST00000567045	ENST00000496992		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	MRPL21	chr11	68668003	-	MYO1B	chr2	192265108	+
In-frame	ENST00000406606	ENST00000339996		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
5CDS-5UTR	ENST00000406606	ENST00000413714		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
In-frame	ENST00000371850	ENST00000339996		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
5CDS-5UTR	ENST00000371850	ENST00000413714		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
In-frame	ENST00000371851	ENST00000339996		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
5CDS-5UTR	ENST00000371851	ENST00000413714		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
5UTR-3CDS	ENST00000486113	ENST00000339996		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
5UTR-5UTR	ENST00000486113	ENST00000413714		TCGA	LD	BRCA	TCGA-AC-A2BM-01A	VAV2	chr9	136804225	-	TMEM8C	chr9	136385410	-
In-frame	ENST00000574590	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000574590	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000574590	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000574590	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000574590	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-3UTR	ENST00000574590	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000575318	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000575318	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000575318	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000575318	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000575318	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-3UTR	ENST00000575318	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000572904	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000572904	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000572904	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000572904	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000572904	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-3UTR	ENST00000572904	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000262419	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000262419	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000262419	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000262419	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000262419	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-3UTR	ENST00000262419	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000432791	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000432791	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
In-frame	ENST00000432791	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000432791	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000432791	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-3UTR	ENST00000432791	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000393476	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000393476	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000393476	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000393476	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-5UTR	ENST00000393476	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
5CDS-3UTR	ENST00000393476	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
intron-3CDS	ENST00000576248	ENST00000375614		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
intron-3CDS	ENST00000576248	ENST00000375615		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
intron-3CDS	ENST00000576248	ENST00000525126		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
intron-5UTR	ENST00000576248	ENST00000436913		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
intron-5UTR	ENST00000576248	ENST00000533265		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
intron-3UTR	ENST00000576248	ENST00000528924		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	KANSL1	chr17	44127899	-	LAYN	chr11	111414648	+
Frame-shit	ENST00000579146	ENST00000335221		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000579146	ENST00000321892		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000579146	ENST00000306378		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
In-frame	ENST00000579146	ENST00000424123		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
5CDS-intron	ENST00000579146	ENST00000577770		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000300658	ENST00000335221		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000300658	ENST00000321892		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000300658	ENST00000306378		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
In-frame	ENST00000300658	ENST00000424123		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
5CDS-intron	ENST00000300658	ENST00000577770		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000378011	ENST00000335221		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000378011	ENST00000321892		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000378011	ENST00000306378		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
In-frame	ENST00000378011	ENST00000424123		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
5CDS-intron	ENST00000378011	ENST00000577770		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000429199	ENST00000335221		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000429199	ENST00000321892		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
Frame-shit	ENST00000429199	ENST00000306378		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
In-frame	ENST00000429199	ENST00000424123		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
5CDS-intron	ENST00000429199	ENST00000577770		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37842175	-	BPTF	chr17	65978368	+
In-frame	ENST00000579146	ENST00000415816		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
In-frame	ENST00000579146	ENST00000438323		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
5CDS-3UTR	ENST00000579146	ENST00000536969		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
In-frame	ENST00000300658	ENST00000415816		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
In-frame	ENST00000300658	ENST00000438323		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
5CDS-3UTR	ENST00000300658	ENST00000536969		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
intron-3CDS	ENST00000378011	ENST00000415816		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
intron-3CDS	ENST00000378011	ENST00000438323		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
intron-3UTR	ENST00000378011	ENST00000536969		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
In-frame	ENST00000429199	ENST00000415816		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
In-frame	ENST00000429199	ENST00000438323		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
5CDS-3UTR	ENST00000429199	ENST00000536969		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	PGAP3	chr17	37840850	-	IFI35	chr17	41164196	+
intron-intron	ENST00000254066	ENST00000430627		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000254066	ENST00000447079		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000254066	ENST00000559545		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000394089	ENST00000430627		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000394089	ENST00000447079		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000394089	ENST00000559545		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000425707	ENST00000430627		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000425707	ENST00000447079		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000425707	ENST00000559545		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394086	ENST00000430627		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394086	ENST00000447079		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394086	ENST00000559545		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394081	ENST00000430627		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394081	ENST00000447079		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000394081	ENST00000559545		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000420042	ENST00000430627		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000420042	ENST00000447079		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
intron-intron	ENST00000420042	ENST00000559545		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	RARA	chr17	38474700	+	CDK12	chr17	37700502	+
Frame-shit	ENST00000269033	ENST00000355303		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000269033	ENST00000398543		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000269033	ENST00000538023		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000269033	ENST00000316296		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000269033	ENST00000530676		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000269033	ENST00000531349		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000269033	ENST00000525494		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000540801	ENST00000355303		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000540801	ENST00000398543		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000540801	ENST00000538023		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000540801	ENST00000316296		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000540801	ENST00000530676		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000540801	ENST00000531349		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000540801	ENST00000525494		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000324677	ENST00000355303		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000324677	ENST00000398543		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000324677	ENST00000538023		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000324677	ENST00000316296		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000324677	ENST00000530676		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000324677	ENST00000531349		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
intron-intron	ENST00000324677	ENST00000525494		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000582084	ENST00000355303		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000582084	ENST00000398543		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000582084	ENST00000538023		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000582084	ENST00000316296		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000582084	ENST00000530676		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000582084	ENST00000531349		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000582084	ENST00000525494		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000590153	ENST00000355303		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000590153	ENST00000398543		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000590153	ENST00000538023		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000590153	ENST00000316296		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000590153	ENST00000530676		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000590153	ENST00000531349		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000590153	ENST00000525494		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000579954	ENST00000355303		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000579954	ENST00000398543		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000579954	ENST00000538023		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000579954	ENST00000316296		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000579954	ENST00000530676		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000579954	ENST00000531349		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000579954	ENST00000525494		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	SSH2	chr17	28256956	-	ANO1	chr11	69957813	+
Frame-shit	ENST00000394121	ENST00000225724		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000394121	ENST00000451249		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000394121	ENST00000467337		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000394121	ENST00000581721		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
5CDS-intron	ENST00000394121	ENST00000579905		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000264637	ENST00000225724		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000264637	ENST00000451249		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000264637	ENST00000467337		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000264637	ENST00000581721		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
5CDS-intron	ENST00000264637	ENST00000579905		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000584985	ENST00000225724		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000584985	ENST00000451249		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000584985	ENST00000467337		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000584985	ENST00000581721		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
5CDS-intron	ENST00000584985	ENST00000579905		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000450525	ENST00000225724		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000450525	ENST00000451249		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000450525	ENST00000467337		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000450525	ENST00000581721		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
5CDS-intron	ENST00000450525	ENST00000579905		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000546243	ENST00000225724		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000546243	ENST00000451249		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000546243	ENST00000467337		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000546243	ENST00000581721		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
5CDS-intron	ENST00000546243	ENST00000579905		TCGA	LD	BRCA	TCGA-AC-A2FB-01A	THRA	chr17	38233191	+	GOSR1	chr17	28817144	+
Frame-shit	ENST00000265107	ENST00000230882		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
Frame-shit	ENST00000265107	ENST00000357703		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
5CDS-intron	ENST00000265107	ENST00000537449		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
5CDS-intron	ENST00000265107	ENST00000513625		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
Frame-shit	ENST00000504564	ENST00000230882		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
Frame-shit	ENST00000504564	ENST00000357703		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
5CDS-intron	ENST00000504564	ENST00000537449		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
5CDS-intron	ENST00000504564	ENST00000513625		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000510699	ENST00000230882		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000510699	ENST00000357703		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
intron-intron	ENST00000510699	ENST00000537449		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
intron-intron	ENST00000510699	ENST00000513625		TCGA	LD	BRCA	TCGA-AC-A2FE-01A	WDR70	chr5	37396672	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000583610	ENST00000300417		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000583610	ENST00000373324		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000583610	ENST00000323301		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000583610	ENST00000373322		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3UTR	ENST00000583610	ENST00000483302		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000394294	ENST00000300417		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000394294	ENST00000373324		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000394294	ENST00000323301		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000394294	ENST00000373322		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3UTR	ENST00000394294	ENST00000483302		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000264658	ENST00000300417		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000264658	ENST00000373324		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000264658	ENST00000323301		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3CDS	ENST00000264658	ENST00000373322		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
intron-3UTR	ENST00000264658	ENST00000483302		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
In-frame	ENST00000577399	ENST00000300417		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
In-frame	ENST00000577399	ENST00000373324		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
In-frame	ENST00000577399	ENST00000323301		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
In-frame	ENST00000577399	ENST00000373322		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
5CDS-3UTR	ENST00000577399	ENST00000483302		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	FBXL20	chr17	37558426	-	LRSAM1	chr9	130258243	+
5UTR-3CDS	ENST00000574590	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
5UTR-3CDS	ENST00000574590	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000575318	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000575318	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000572904	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000572904	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000262419	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000262419	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000432791	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000432791	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000393476	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000393476	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000576248	ENST00000007414		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
intron-3CDS	ENST00000576248	ENST00000392507		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	KANSL1	chr17	44301037	-	OSBPL7	chr17	45890769	-
In-frame	ENST00000362042	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000362042	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000362042	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000585291	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000585291	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000585291	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000357480	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000357480	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000357480	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000361665	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000361665	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000361665	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
intron-3CDS	ENST00000579481	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
intron-3CDS	ENST00000579481	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
intron-5UTR	ENST00000579481	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000582155	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000582155	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000582155	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000583378	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000583378	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000583378	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000536222	ENST00000373203		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000536222	ENST00000344849		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
5CDS-5UTR	ENST00000536222	ENST00000480266		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	NFE2L1	chr17	46134864	+	ENG	chr9	130582316	-
In-frame	ENST00000342287	ENST00000398238		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000342287	ENST00000225282		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000342287	ENST00000575068		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000373487	ENST00000398238		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000373487	ENST00000225282		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000373487	ENST00000575068		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000373489	ENST00000398238		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000373489	ENST00000225282		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000373489	ENST00000575068		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
5UTR-3CDS	ENST00000373483	ENST00000398238		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
5UTR-3CDS	ENST00000373483	ENST00000225282		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
5UTR-3CDS	ENST00000373483	ENST00000575068		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000447726	ENST00000398238		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000447726	ENST00000225282		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
In-frame	ENST00000447726	ENST00000575068		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
intron-3CDS	ENST00000538998	ENST00000398238		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
intron-3CDS	ENST00000538998	ENST00000225282		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
intron-3CDS	ENST00000538998	ENST00000575068		TCGA	LD	BRCA	TCGA-AC-A2FF-01A	PBX3	chr9	128510902	+	NSF	chr17	44751780	+
intron-intron	ENST00000449833	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000449833	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000449833	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000449833	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000449833	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000449833	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000409161	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000409161	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000409161	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000409161	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000409161	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000409161	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000423696	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000423696	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000423696	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000423696	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000423696	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000423696	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000338508	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000338508	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000338508	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000338508	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000338508	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000338508	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000409530	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000409530	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000409530	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000409530	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000409530	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000409530	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000449116	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000449116	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000449116	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000449116	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000449116	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000449116	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000357171	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000357171	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000357171	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000357171	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000357171	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000357171	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000468619	ENST00000391748		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000468619	ENST00000314446		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000468619	ENST00000391746		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000468619	ENST00000391749		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000468619	ENST00000434421		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-intron	ENST00000468619	ENST00000471216		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SHANK2	chr11	70935743	-	LILRB2	chr19	54784932	-
intron-5UTR	ENST00000593812	ENST00000269703		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SLC35E1	chr19	16677343	-	CYP4F22	chr19	15634504	+
intron-intron	ENST00000593812	ENST00000601005		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SLC35E1	chr19	16677343	-	CYP4F22	chr19	15634504	+
5CDS-5UTR	ENST00000595753	ENST00000269703		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SLC35E1	chr19	16677343	-	CYP4F22	chr19	15634504	+
5CDS-intron	ENST00000595753	ENST00000601005		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SLC35E1	chr19	16677343	-	CYP4F22	chr19	15634504	+
5CDS-5UTR	ENST00000431408	ENST00000269703		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SLC35E1	chr19	16677343	-	CYP4F22	chr19	15634504	+
5CDS-intron	ENST00000431408	ENST00000601005		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	SLC35E1	chr19	16677343	-	CYP4F22	chr19	15634504	+
Frame-shit	ENST00000344824	ENST00000339007		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
Frame-shit	ENST00000344824	ENST00000595840		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
Frame-shit	ENST00000538887	ENST00000339007		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
Frame-shit	ENST00000538887	ENST00000595840		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
Frame-shit	ENST00000300933	ENST00000339007		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
Frame-shit	ENST00000300933	ENST00000595840		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
intron-3CDS	ENST00000591645	ENST00000339007		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
intron-3CDS	ENST00000591645	ENST00000595840		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	TPM4	chr19	16192856	+	LRRC25	chr19	18502935	-
intron-5UTR	ENST00000355537	ENST00000340023		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	ZNF536	chr19	30775048	+	FPR2	chr19	52271898	+
intron-5UTR	ENST00000355537	ENST00000598953		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	ZNF536	chr19	30775048	+	FPR2	chr19	52271898	+
intron-5UTR	ENST00000355537	ENST00000598776		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	ZNF536	chr19	30775048	+	FPR2	chr19	52271898	+
3UTR-5UTR	ENST00000590564	ENST00000340023		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	ZNF536	chr19	30775048	+	FPR2	chr19	52271898	+
3UTR-5UTR	ENST00000590564	ENST00000598953		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	ZNF536	chr19	30775048	+	FPR2	chr19	52271898	+
3UTR-5UTR	ENST00000590564	ENST00000598776		TCGA	LD	BRCA	TCGA-AC-A2FM-01A	ZNF536	chr19	30775048	+	FPR2	chr19	52271898	+
Frame-shit	ENST00000396981	ENST00000225665		TCGA	LD	BRCA	TCGA-AC-A2FO-01A	UBE2G1	chr17	4269566	-	SLC25A11	chr17	4842507	-
5CDS-intron	ENST00000396981	ENST00000544061		TCGA	LD	BRCA	TCGA-AC-A2FO-01A	UBE2G1	chr17	4269566	-	SLC25A11	chr17	4842507	-
5UTR-3CDS	ENST00000572484	ENST00000225665		TCGA	LD	BRCA	TCGA-AC-A2FO-01A	UBE2G1	chr17	4269566	-	SLC25A11	chr17	4842507	-
5UTR-intron	ENST00000572484	ENST00000544061		TCGA	LD	BRCA	TCGA-AC-A2FO-01A	UBE2G1	chr17	4269566	-	SLC25A11	chr17	4842507	-
5CDS-intron	ENST00000347053	ENST00000393500		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393494		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000403559		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000408937		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000350908		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393498		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393489		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000393491		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000459666		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000378237		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000360232		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000390668		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000347053	ENST00000462331		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393500		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393494		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000403559		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000408937		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000350908		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393498		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393489		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000393491		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000459666		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000378237		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000360232		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000390668		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000297135	ENST00000462331		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393500		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393494		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000403559		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000408937		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000350908		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393498		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393489		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000393491		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000459666		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000378237		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000360232		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000390668		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5CDS-intron	ENST00000393603	ENST00000462331		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393500		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393494		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000403559		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000408937		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000350908		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393498		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393489		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000393491		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000459666		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000378237		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000360232		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000390668		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
5UTR-intron	ENST00000475638	ENST00000462331		TCGA	LD	BRCA	TCGA-AC-A2QH-01A	COG5	chr7	107167682	-	FOXP2	chr7	114329837	+
In-frame	ENST00000377967	ENST00000377811		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000377967	ENST00000276062		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000382899	ENST00000377811		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000382899	ENST00000276062		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000536777	ENST00000377811		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000536777	ENST00000276062		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000543216	ENST00000377811		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
In-frame	ENST00000543216	ENST00000276062		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
intron-3CDS	ENST00000479423	ENST00000377811		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
intron-3CDS	ENST00000479423	ENST00000276062		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	KDM6A	chrX	44733233	+	NDUFB11	chrX	47002143	-
5CDS-intron	ENST00000514800	ENST00000378741		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000514800	ENST00000308647		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000514800	ENST00000378736		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000355443	ENST00000378741		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000355443	ENST00000308647		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000355443	ENST00000378736		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000329687	ENST00000378741		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000329687	ENST00000308647		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000329687	ENST00000378736		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000508221	ENST00000378741		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000508221	ENST00000308647		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000508221	ENST00000378736		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000507555	ENST00000378741		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000507555	ENST00000308647		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
5CDS-intron	ENST00000507555	ENST00000378736		TCGA	LD	BRCA	TCGA-AC-A2QJ-01A	MFSD10	chr4	2933552	-	ATAD3B	chr1	1425637	+
In-frame	ENST00000265689	ENST00000340360		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000265689	ENST00000321448		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000265689	ENST00000527087		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000265689	ENST00000533598		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-3CDS	ENST00000533728	ENST00000340360		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-5UTR	ENST00000533728	ENST00000321448		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-5UTR	ENST00000533728	ENST00000527087		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
intron-5UTR	ENST00000533728	ENST00000533598		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
In-frame	ENST00000356135	ENST00000340360		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000356135	ENST00000321448		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000356135	ENST00000527087		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
5CDS-5UTR	ENST00000356135	ENST00000533598		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	CHKA	chr11	67888295	-	XRRA1	chr11	74641417	-
Frame-shit	ENST00000294064	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000294064	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000294064	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000294064	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000294064	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000531509	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531509	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531509	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531509	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531509	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-3CDS	ENST00000544263	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000544263	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000544263	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000544263	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000544263	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000529024	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000529024	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000529024	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000529024	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000529024	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000532963	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000532963	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000532963	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000532963	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000532963	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000531619	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531619	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531619	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531619	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000531619	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-3CDS	ENST00000545272	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000545272	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000545272	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000545272	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5UTR-intron	ENST00000545272	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000526068	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000526068	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000526068	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000526068	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000526068	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000534628	ENST00000322776		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000534628	ENST00000532303		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000534628	ENST00000529927		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000534628	ENST00000415352		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
5CDS-intron	ENST00000534628	ENST00000526169		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	NEU3	chr11	74700199	+	NDUFV1	chr11	67375871	+
Frame-shit	ENST00000295899	ENST00000273261		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	THOC7	chr3	63849448	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000295899	ENST00000383703		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	THOC7	chr3	63849448	-	LRIG1	chr3	66512933	-
5CDS-intron	ENST00000295899	ENST00000496559		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	THOC7	chr3	63849448	-	LRIG1	chr3	66512933	-
intron-3CDS	ENST00000498422	ENST00000273261		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	THOC7	chr3	63849448	-	LRIG1	chr3	66512933	-
intron-3CDS	ENST00000498422	ENST00000383703		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	THOC7	chr3	63849448	-	LRIG1	chr3	66512933	-
intron-intron	ENST00000498422	ENST00000496559		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	THOC7	chr3	63849448	-	LRIG1	chr3	66512933	-
5UTR-3CDS	ENST00000286827	ENST00000375771		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000286827	ENST00000375766		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000286827	ENST00000400773		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000286827	ENST00000441801		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000286827	ENST00000332305		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3UTR	ENST00000286827	ENST00000509138		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000541036	ENST00000375771		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000541036	ENST00000375766		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000541036	ENST00000400773		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-intron	ENST00000541036	ENST00000441801		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-intron	ENST00000541036	ENST00000332305		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
intron-3UTR	ENST00000541036	ENST00000509138		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000469412	ENST00000375771		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000469412	ENST00000375766		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000469412	ENST00000400773		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000469412	ENST00000441801		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-intron	ENST00000469412	ENST00000332305		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3UTR	ENST00000469412	ENST00000509138		TCGA	LD	BRCA	TCGA-AC-A3OD-01A	TIAM1	chr21	32711558	-	FBLIM1	chr1	16111043	+
5UTR-3CDS	ENST00000544907	ENST00000225402		TCGA	LD	BRCA	TCGA-AC-A3QQ-01A	TNFAIP1	chr17	26662882	+	AATF	chr17	35343916	+
5UTR-intron	ENST00000544907	ENST00000590321		TCGA	LD	BRCA	TCGA-AC-A3QQ-01A	TNFAIP1	chr17	26662882	+	AATF	chr17	35343916	+
5UTR-3CDS	ENST00000226225	ENST00000225402		TCGA	LD	BRCA	TCGA-AC-A3QQ-01A	TNFAIP1	chr17	26662882	+	AATF	chr17	35343916	+
5UTR-intron	ENST00000226225	ENST00000590321		TCGA	LD	BRCA	TCGA-AC-A3QQ-01A	TNFAIP1	chr17	26662882	+	AATF	chr17	35343916	+
3UTR-3CDS	ENST00000583213	ENST00000225402		TCGA	LD	BRCA	TCGA-AC-A3QQ-01A	TNFAIP1	chr17	26662882	+	AATF	chr17	35343916	+
3UTR-intron	ENST00000583213	ENST00000590321		TCGA	LD	BRCA	TCGA-AC-A3QQ-01A	TNFAIP1	chr17	26662882	+	AATF	chr17	35343916	+
Frame-shit	ENST00000383729	ENST00000412554		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000383729	ENST00000452149		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
In-frame	ENST00000383729	ENST00000470044		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000383729	ENST00000325962		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000383729	ENST00000397344		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
5CDS-intron	ENST00000383729	ENST00000563416		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000343546	ENST00000412554		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000343546	ENST00000452149		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
In-frame	ENST00000343546	ENST00000470044		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000343546	ENST00000325962		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
Frame-shit	ENST00000343546	ENST00000397344		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
5CDS-intron	ENST00000343546	ENST00000563416		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
3UTR-3CDS	ENST00000609406	ENST00000412554		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
3UTR-3CDS	ENST00000609406	ENST00000452149		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
3UTR-3CDS	ENST00000609406	ENST00000470044		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
3UTR-3CDS	ENST00000609406	ENST00000325962		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
3UTR-3CDS	ENST00000609406	ENST00000397344		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
3UTR-intron	ENST00000609406	ENST00000563416		TCGA	LD	BRCA	TCGA-AC-A3TM-01A	P4HTM	chr3	49028347	+	MEIOB	chr16	1884367	-
intron-3CDS	ENST00000284142	ENST00000390242		TCGA	LD	BRCA	TCGA-AC-A3W5-01A	ASB17	chr1	76387871	-	IGKJ1	chr2	89161427	-
Frame-shit	ENST00000377603	ENST00000377452		TCGA	LD	BRCA	TCGA-AC-A3W5-01A	POLR3F	chr20	18454102	+	DTD1	chr20	18724744	+
5CDS-intron	ENST00000377603	ENST00000494921		TCGA	LD	BRCA	TCGA-AC-A3W5-01A	POLR3F	chr20	18454102	+	DTD1	chr20	18724744	+
3UTR-3CDS	ENST00000462997	ENST00000377452		TCGA	LD	BRCA	TCGA-AC-A3W5-01A	POLR3F	chr20	18454102	+	DTD1	chr20	18724744	+
3UTR-intron	ENST00000462997	ENST00000494921		TCGA	LD	BRCA	TCGA-AC-A3W5-01A	POLR3F	chr20	18454102	+	DTD1	chr20	18724744	+
intron-3CDS	ENST00000338110	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
intron-3CDS	ENST00000395248	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
intron-3CDS	ENST00000575627	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
intron-3CDS	ENST00000566897	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
5UTR-3CDS	ENST00000569545	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
intron-3CDS	ENST00000563060	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
intron-3CDS	ENST00000412304	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
5UTR-3CDS	ENST00000564546	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
5UTR-3CDS	ENST00000564595	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
5UTR-3CDS	ENST00000569798	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
5UTR-3CDS	ENST00000395240	ENST00000225964		TCGA	LD	BRCA	TCGA-AC-A3W7-01A	ALDOA	chr16	30077248	+	COL1A1	chr17	48272691	-
5CDS-5UTR	ENST00000279146	ENST00000529704		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	AIP	chr11	67257928	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000279146	ENST00000312419		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	AIP	chr11	67257928	+	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000279146	ENST00000539074		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	AIP	chr11	67257928	+	POLD4	chr11	67120548	-
intron-3CDS	ENST00000530069	ENST00000278550		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	ALDH3B2	chr11	67441907	-	TENM4	chr11	78433962	-
intron-intron	ENST00000530069	ENST00000533038		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	ALDH3B2	chr11	67441907	-	TENM4	chr11	78433962	-
5UTR-3CDS	ENST00000349015	ENST00000278550		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	ALDH3B2	chr11	67441907	-	TENM4	chr11	78433962	-
5UTR-intron	ENST00000349015	ENST00000533038		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	ALDH3B2	chr11	67441907	-	TENM4	chr11	78433962	-
intron-3CDS	ENST00000531881	ENST00000278550		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	ALDH3B2	chr11	67441907	-	TENM4	chr11	78433962	-
intron-intron	ENST00000531881	ENST00000533038		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	ALDH3B2	chr11	67441907	-	TENM4	chr11	78433962	-
intron-3CDS	ENST00000449833	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000449833	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000449833	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000409161	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000409161	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000409161	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000423696	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000423696	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000423696	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000338508	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000338508	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000338508	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000409530	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000409530	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000409530	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000449116	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000449116	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000449116	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000357171	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000357171	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000357171	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000468619	ENST00000533211		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000468619	ENST00000309996		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
intron-3CDS	ENST00000468619	ENST00000529997		TCGA	LD	BRCA	TCGA-AC-A4ZE-01A	SHANK2	chr11	70514544	-	SPTBN2	chr11	66455680	-
3UTR-intron	ENST00000557932	ENST00000541920		TCGA	LD	BRCA	TCGA-AC-A5EH-01A	WASH3P	chr15	102506426	+	ACSF2	chr17	48538038	+
3UTR-intron	ENST00000557932	ENST00000300441		TCGA	LD	BRCA	TCGA-AC-A5EH-01A	WASH3P	chr15	102506426	+	ACSF2	chr17	48538038	+
3UTR-intron	ENST00000557932	ENST00000504392		TCGA	LD	BRCA	TCGA-AC-A5EH-01A	WASH3P	chr15	102506426	+	ACSF2	chr17	48538038	+
3UTR-intron	ENST00000557932	ENST00000427954		TCGA	LD	BRCA	TCGA-AC-A5EH-01A	WASH3P	chr15	102506426	+	ACSF2	chr17	48538038	+
3UTR-intron	ENST00000557932	ENST00000502667		TCGA	LD	BRCA	TCGA-AC-A5EH-01A	WASH3P	chr15	102506426	+	ACSF2	chr17	48538038	+
3UTR-intron	ENST00000557932	ENST00000506085		TCGA	LD	BRCA	TCGA-AC-A5EH-01A	WASH3P	chr15	102506426	+	ACSF2	chr17	48538038	+
Frame-shit	ENST00000448504	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ARSG	chr17	66352945	+	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000448504	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ARSG	chr17	66352945	+	PRKCA	chr17	64492319	+
Frame-shit	ENST00000452479	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ARSG	chr17	66352945	+	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000452479	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ARSG	chr17	66352945	+	PRKCA	chr17	64492319	+
3UTR-3CDS	ENST00000582154	ENST00000413366		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ARSG	chr17	66352945	+	PRKCA	chr17	64492319	+
3UTR-intron	ENST00000582154	ENST00000583361		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ARSG	chr17	66352945	+	PRKCA	chr17	64492319	+
Frame-shit	ENST00000335221	ENST00000448504		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-5UTR	ENST00000335221	ENST00000452479		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-intron	ENST00000335221	ENST00000582154		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
Frame-shit	ENST00000321892	ENST00000448504		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-5UTR	ENST00000321892	ENST00000452479		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-intron	ENST00000321892	ENST00000582154		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
Frame-shit	ENST00000306378	ENST00000448504		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-5UTR	ENST00000306378	ENST00000452479		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-intron	ENST00000306378	ENST00000582154		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
Frame-shit	ENST00000424123	ENST00000448504		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-5UTR	ENST00000424123	ENST00000452479		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5CDS-intron	ENST00000424123	ENST00000582154		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
intron-3CDS	ENST00000577770	ENST00000448504		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
intron-5UTR	ENST00000577770	ENST00000452479		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
intron-intron	ENST00000577770	ENST00000582154		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	BPTF	chr17	65944422	+	ARSG	chr17	66339745	+
5UTR-3CDS	ENST00000558331	ENST00000336338		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
5UTR-intron	ENST00000558331	ENST00000492438		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
5UTR-3CDS	ENST00000251363	ENST00000336338		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
5UTR-intron	ENST00000251363	ENST00000492438		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
intron-3CDS	ENST00000559450	ENST00000336338		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
intron-intron	ENST00000559450	ENST00000492438		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
5UTR-3CDS	ENST00000559336	ENST00000336338		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
5UTR-intron	ENST00000559336	ENST00000492438		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
3UTR-3CDS	ENST00000595722	ENST00000336338		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
3UTR-intron	ENST00000595722	ENST00000492438		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	CERS4	chr19	8275746	+	SPAG17	chr1	118550821	-
5UTR-3CDS	ENST00000252577	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-5UTR	ENST00000252577	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-intron	ENST00000252577	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-intron	ENST00000252577	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-3CDS	ENST00000360315	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-5UTR	ENST00000360315	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-intron	ENST00000360315	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-intron	ENST00000360315	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-3CDS	ENST00000537887	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-5UTR	ENST00000537887	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-intron	ENST00000537887	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
5UTR-intron	ENST00000537887	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-3CDS	ENST00000404158	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-5UTR	ENST00000404158	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000404158	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000404158	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-3CDS	ENST00000358713	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-5UTR	ENST00000358713	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000358713	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000358713	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-3CDS	ENST00000429563	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-5UTR	ENST00000429563	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000429563	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000429563	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-3CDS	ENST00000473184	ENST00000308677		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-5UTR	ENST00000473184	ENST00000350356		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000473184	ENST00000590853		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
intron-intron	ENST00000473184	ENST00000589994		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	GATAD2A	chr19	19496947	+	PRKACA	chr19	14204604	-
In-frame	ENST00000413366	ENST00000577730		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
In-frame	ENST00000413366	ENST00000299345		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
In-frame	ENST00000413366	ENST00000577390		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
In-frame	ENST00000413366	ENST00000584337		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
5CDS-intron	ENST00000413366	ENST00000580044		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000583361	ENST00000577730		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000583361	ENST00000299345		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000583361	ENST00000577390		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
intron-3CDS	ENST00000583361	ENST00000584337		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
intron-intron	ENST00000583361	ENST00000580044		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	PRKCA	chr17	64685165	+	CDH8	chr16	61935377	-
In-frame	ENST00000378164	ENST00000293350		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
In-frame	ENST00000378164	ENST00000540132		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
In-frame	ENST00000378164	ENST00000455361		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
In-frame	ENST00000378164	ENST00000433981		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
5CDS-intron	ENST00000378164	ENST00000598015		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
intron-3CDS	ENST00000519355	ENST00000293350		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
intron-3CDS	ENST00000519355	ENST00000540132		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
intron-3CDS	ENST00000519355	ENST00000455361		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
intron-3CDS	ENST00000519355	ENST00000433981		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
intron-intron	ENST00000519355	ENST00000598015		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TAF2	chr8	120843917	-	ALDH16A1	chr19	49967111	+
5CDS-5UTR	ENST00000310924	ENST00000392138		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
5CDS-intron	ENST00000310924	ENST00000590414		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
5CDS-intron	ENST00000310924	ENST00000339503		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
5CDS-intron	ENST00000310924	ENST00000536220		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
5CDS-intron	ENST00000310924	ENST00000357309		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
5CDS-intron	ENST00000310924	ENST00000585724		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
5CDS-intron	ENST00000310924	ENST00000480587		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-5UTR	ENST00000576768	ENST00000392138		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000576768	ENST00000590414		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000576768	ENST00000339503		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000576768	ENST00000536220		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000576768	ENST00000357309		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000576768	ENST00000585724		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000576768	ENST00000480587		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-5UTR	ENST00000340848	ENST00000392138		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000340848	ENST00000590414		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000340848	ENST00000339503		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000340848	ENST00000536220		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000340848	ENST00000357309		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000340848	ENST00000585724		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000340848	ENST00000480587		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-5UTR	ENST00000572862	ENST00000392138		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000572862	ENST00000590414		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000572862	ENST00000339503		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000572862	ENST00000536220		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000572862	ENST00000357309		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000572862	ENST00000585724		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000572862	ENST00000480587		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-5UTR	ENST00000570373	ENST00000392138		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000570373	ENST00000590414		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000570373	ENST00000339503		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000570373	ENST00000536220		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000570373	ENST00000357309		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000570373	ENST00000585724		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
intron-intron	ENST00000570373	ENST00000480587		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TBC1D16	chr17	77925249	-	ZNF573	chr19	38307860	-
Frame-shit	ENST00000395715	ENST00000253110		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000395715	ENST00000591813		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000395715	ENST00000397881		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000220888	ENST00000253110		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000220888	ENST00000591813		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000220888	ENST00000397881		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000519076	ENST00000253110		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000519076	ENST00000591813		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000519076	ENST00000397881		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000520276	ENST00000253110		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000520276	ENST00000591813		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000520276	ENST00000397881		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000519674	ENST00000253110		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000519674	ENST00000591813		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
Frame-shit	ENST00000519674	ENST00000397881		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	C19orf66	chr19	10200333	+
In-frame	ENST00000395715	ENST00000424843		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
In-frame	ENST00000395715	ENST00000276654		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
5CDS-intron	ENST00000395715	ENST00000518375		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000220888	ENST00000424843		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000220888	ENST00000276654		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
5CDS-intron	ENST00000220888	ENST00000518375		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000519076	ENST00000424843		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000519076	ENST00000276654		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
5CDS-intron	ENST00000519076	ENST00000518375		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000520276	ENST00000424843		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000520276	ENST00000276654		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
5CDS-intron	ENST00000520276	ENST00000518375		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000519674	ENST00000424843		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000519674	ENST00000276654		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
5CDS-intron	ENST00000519674	ENST00000518375		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	TRPS1	chr8	116599228	-	LRP12	chr8	105521302	-
intron-3CDS	ENST00000601493	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000601493	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000597503	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000597503	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000243643	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000243643	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000595193	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000595193	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
In-frame	ENST00000594011	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
In-frame	ENST00000594011	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000455735	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000455735	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000440291	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000440291	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000421033	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000421033	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000448501	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
Frame-shit	ENST00000448501	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000500065	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000500065	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000597748	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000597748	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000601215	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000601215	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000595813	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000595813	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
In-frame	ENST00000599261	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
In-frame	ENST00000599261	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000596683	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000596683	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000600574	ENST00000521861		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000600574	ENST00000276682		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF415	chr19	53618957	-	EIF3H	chr8	117671219	-
5CDS-5UTR	ENST00000588268	ENST00000521689		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000588268	ENST00000254898		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000588268	ENST00000524308		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-intron	ENST00000588268	ENST00000522025		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000588268	ENST00000520016		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-intron	ENST00000588268	ENST00000518238		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000360357	ENST00000521689		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000360357	ENST00000254898		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000360357	ENST00000524308		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-intron	ENST00000360357	ENST00000522025		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-5UTR	ENST00000360357	ENST00000520016		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
5CDS-intron	ENST00000360357	ENST00000518238		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
intron-5UTR	ENST00000540605	ENST00000521689		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
intron-5UTR	ENST00000540605	ENST00000254898		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
intron-5UTR	ENST00000540605	ENST00000524308		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
intron-intron	ENST00000540605	ENST00000522025		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
intron-5UTR	ENST00000540605	ENST00000520016		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
intron-intron	ENST00000540605	ENST00000518238		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF461	chr19	37155600	-	MATN2	chr8	98900303	+
3UTR-intron	ENST00000596921	ENST00000391743		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
3UTR-intron	ENST00000596921	ENST00000348231		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
3UTR-intron	ENST00000596921	ENST00000391742		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
3UTR-intron	ENST00000596921	ENST00000434277		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
3UTR-intron	ENST00000596921	ENST00000313038		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
3UTR-intron	ENST00000596921	ENST00000474878		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
3UTR-5UTR	ENST00000596921	ENST00000463489		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000306910	ENST00000391743		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000306910	ENST00000348231		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000306910	ENST00000391742		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000306910	ENST00000434277		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000306910	ENST00000313038		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000306910	ENST00000474878		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-5UTR	ENST00000306910	ENST00000463489		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000593920	ENST00000391743		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000593920	ENST00000348231		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000593920	ENST00000391742		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000593920	ENST00000434277		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000593920	ENST00000313038		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000593920	ENST00000474878		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-5UTR	ENST00000593920	ENST00000463489		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000596281	ENST00000391743		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000596281	ENST00000348231		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000596281	ENST00000391742		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000596281	ENST00000434277		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000596281	ENST00000313038		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000596281	ENST00000474878		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-5UTR	ENST00000596281	ENST00000463489		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000599238	ENST00000391743		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000599238	ENST00000348231		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000599238	ENST00000391742		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000599238	ENST00000434277		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000599238	ENST00000313038		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000599238	ENST00000474878		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-5UTR	ENST00000599238	ENST00000463489		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000322834	ENST00000391743		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000322834	ENST00000348231		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000322834	ENST00000391742		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000322834	ENST00000434277		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000322834	ENST00000313038		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-intron	ENST00000322834	ENST00000474878		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
intron-5UTR	ENST00000322834	ENST00000463489		TCGA	LD	BRCA	TCGA-AC-A5XU-01A	ZNF584	chr19	58913029	+	LAIR1	chr19	54875937	-
5CDS-intron	ENST00000225719	ENST00000371743		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000225719	ENST00000450535		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000225719	ENST00000441722		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000225719	ENST00000417721		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000225719	ENST00000458653		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000225719	ENST00000326677		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000225719	ENST00000428008		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000371743		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000450535		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000441722		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000417721		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000458653		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000326677		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000543464	ENST00000428008		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000371743		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000450535		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000441722		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000417721		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000458653		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000326677		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
intron-intron	ENST00000584051	ENST00000428008		TCGA	LD	BRCA	TCGA-AC-A62V-01A	CPD	chr17	28712254	+	ZFAS1	chr20	47911940	+
5CDS-intron	ENST00000184956	ENST00000300896		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000184956	ENST00000592339		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000184956	ENST00000393003		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000184956	ENST00000586881		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000585976	ENST00000300896		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000585976	ENST00000592339		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000585976	ENST00000393003		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5CDS-intron	ENST00000585976	ENST00000586881		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5UTR-intron	ENST00000585712	ENST00000300896		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5UTR-intron	ENST00000585712	ENST00000592339		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5UTR-intron	ENST00000585712	ENST00000393003		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
5UTR-intron	ENST00000585712	ENST00000586881		TCGA	LD	BRCA	TCGA-AC-A62V-01A	HEATR6	chr17	58156057	-	USP32	chr17	58499766	-
intron-3CDS	ENST00000341744	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000341744	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000341744	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000341744	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
5UTR-3CDS	ENST00000395816	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
5UTR-3CDS	ENST00000395816	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
5UTR-intron	ENST00000395816	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
5UTR-intron	ENST00000395816	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000347215	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000347215	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000347215	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000347215	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000265626	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000265626	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000265626	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000265626	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000395814	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000395814	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000395814	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000395814	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000472841	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000472841	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000472841	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000472841	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	PMEPA1	chr20	56285516	-	TRPC4AP	chr20	33623111	-
In-frame	ENST00000253363	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000253363	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000253363	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000253363	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000253363	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000253363	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000361162	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000361162	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000361162	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000361162	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000361162	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000361162	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000528062	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000528062	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000528062	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000528062	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000528062	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000528062	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000407261	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
In-frame	ENST00000407261	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000407261	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000407261	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000407261	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000407261	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000397370	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000397370	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000397370	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000397370	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-intron	ENST00000397370	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-intron	ENST00000397370	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000463098	ENST00000262291		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000463098	ENST00000537567		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000463098	ENST00000539763		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000463098	ENST00000536180		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-intron	ENST00000463098	ENST00000545362		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
intron-intron	ENST00000463098	ENST00000588617		TCGA	LD	BRCA	TCGA-AC-A62V-01A	RBM39	chr20	34309662	-	VMP1	chr17	57842332	+
5CDS-3UTR	ENST00000582809	ENST00000577702		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000582809	ENST00000310827		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000582809	ENST00000431926		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000582809	ENST00000415273		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000577616	ENST00000577702		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000577616	ENST00000310827		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000577616	ENST00000431926		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
intron-intron	ENST00000577616	ENST00000415273		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000326270	ENST00000577702		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000326270	ENST00000310827		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000326270	ENST00000431926		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000326270	ENST00000415273		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000346027	ENST00000577702		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000346027	ENST00000310827		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000346027	ENST00000431926		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000346027	ENST00000415273		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000343388	ENST00000577702		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000343388	ENST00000310827		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000343388	ENST00000431926		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000343388	ENST00000415273		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000542523	ENST00000577702		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000542523	ENST00000310827		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000542523	ENST00000431926		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000542523	ENST00000415273		TCGA	LD	BRCA	TCGA-AC-A62V-01A	TLK2	chr17	60685509	+	DCAF7	chr17	61655831	+
Frame-shit	ENST00000300896	ENST00000251241		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
Frame-shit	ENST00000300896	ENST00000451169		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
Frame-shit	ENST00000300896	ENST00000425628		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
intron-3CDS	ENST00000592339	ENST00000251241		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
intron-3CDS	ENST00000592339	ENST00000451169		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
intron-3CDS	ENST00000592339	ENST00000425628		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
Frame-shit	ENST00000393003	ENST00000251241		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
Frame-shit	ENST00000393003	ENST00000451169		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
Frame-shit	ENST00000393003	ENST00000425628		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
intron-3CDS	ENST00000586881	ENST00000251241		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
intron-3CDS	ENST00000586881	ENST00000451169		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
intron-3CDS	ENST00000586881	ENST00000425628		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58469244	-	DHX40	chr17	57676097	+
Frame-shit	ENST00000300896	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
Frame-shit	ENST00000300896	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
5CDS-intron	ENST00000300896	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
5CDS-intron	ENST00000300896	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
In-frame	ENST00000592339	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
In-frame	ENST00000592339	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
5CDS-intron	ENST00000592339	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
5CDS-intron	ENST00000592339	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-3CDS	ENST00000393003	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-3CDS	ENST00000393003	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-intron	ENST00000393003	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-intron	ENST00000393003	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-3CDS	ENST00000586881	ENST00000451813		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-3CDS	ENST00000586881	ENST00000252015		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-intron	ENST00000586881	ENST00000539834		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
intron-intron	ENST00000586881	ENST00000432634		TCGA	LD	BRCA	TCGA-AC-A62V-01A	USP32	chr17	58303400	-	TRPC4AP	chr20	33657215	-
In-frame	ENST00000220592	ENST00000360540		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
In-frame	ENST00000220592	ENST00000544451		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5CDS-5UTR	ENST00000220592	ENST00000519559		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5CDS-5UTR	ENST00000220592	ENST00000522514		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5CDS-intron	ENST00000220592	ENST00000521344		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
In-frame	ENST00000519980	ENST00000360540		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
In-frame	ENST00000519980	ENST00000544451		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5CDS-5UTR	ENST00000519980	ENST00000519559		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5CDS-5UTR	ENST00000519980	ENST00000522514		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5CDS-intron	ENST00000519980	ENST00000521344		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5UTR-3CDS	ENST00000517293	ENST00000360540		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5UTR-3CDS	ENST00000517293	ENST00000544451		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5UTR-5UTR	ENST00000517293	ENST00000519559		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5UTR-5UTR	ENST00000517293	ENST00000522514		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
5UTR-intron	ENST00000517293	ENST00000521344		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	AGO2	chr8	141595218	-	PCMTD1	chr8	52746249	-
In-frame	ENST00000250498	ENST00000397762		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
5CDS-5UTR	ENST00000250498	ENST00000461909		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
intron-3CDS	ENST00000489532	ENST00000397762		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
intron-5UTR	ENST00000489532	ENST00000461909		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
In-frame	ENST00000538631	ENST00000397762		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
5CDS-5UTR	ENST00000538631	ENST00000461909		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
intron-3CDS	ENST00000543337	ENST00000397762		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
intron-5UTR	ENST00000543337	ENST00000461909		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	DAD1	chr14	23057853	-	RAB2B	chr14	21936911	-
5UTR-3CDS	ENST00000378609	ENST00000341426		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000378609	ENST00000341991		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000378609	ENST00000378625		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000378609	ENST00000344463		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000378609	ENST00000492768		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000378609	ENST00000342348		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000341426		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000341991		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000378625		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000344463		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000472614	ENST00000492768		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000472614	ENST00000342348		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000395715	ENST00000397195		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-3UTR	ENST00000395715	ENST00000572915		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-intron	ENST00000395715	ENST00000451360		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-5UTR	ENST00000220888	ENST00000397195		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-3UTR	ENST00000220888	ENST00000572915		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-intron	ENST00000220888	ENST00000451360		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
intron-5UTR	ENST00000519076	ENST00000397195		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
intron-3UTR	ENST00000519076	ENST00000572915		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
intron-intron	ENST00000519076	ENST00000451360		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
intron-5UTR	ENST00000520276	ENST00000397195		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
intron-3UTR	ENST00000520276	ENST00000572915		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
intron-intron	ENST00000520276	ENST00000451360		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-5UTR	ENST00000519674	ENST00000397195		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-3UTR	ENST00000519674	ENST00000572915		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
5UTR-intron	ENST00000519674	ENST00000451360		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	TRPS1	chr8	116680772	-	PAFAH1B1	chr17	2541393	+
Frame-shit	ENST00000348165	ENST00000429029		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
Frame-shit	ENST00000348165	ENST00000262177		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
Frame-shit	ENST00000348165	ENST00000452797		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
5CDS-intron	ENST00000348165	ENST00000443280		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
5CDS-intron	ENST00000348165	ENST00000494267		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
Frame-shit	ENST00000389103	ENST00000429029		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
Frame-shit	ENST00000389103	ENST00000262177		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
Frame-shit	ENST00000389103	ENST00000452797		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
5CDS-intron	ENST00000389103	ENST00000443280		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
5CDS-intron	ENST00000389103	ENST00000494267		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157174940	+
Frame-shit	ENST00000337859	ENST00000304698		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	ZC3H15	chr2	187351184	+	FAM171B	chr2	187604955	+
5UTR-3CDS	ENST00000544130	ENST00000304698		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	ZC3H15	chr2	187351184	+	FAM171B	chr2	187604955	+
intron-3CDS	ENST00000468120	ENST00000304698		TCGA	LD	BRCA	TCGA-AC-A6IW-01A	ZC3H15	chr2	187351184	+	FAM171B	chr2	187604955	+
5UTR-3CDS	ENST00000505841	ENST00000371847		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	CYP4Z2P	chr1	47364515	-	SPATA6	chr1	48918803	-
5UTR-3CDS	ENST00000505841	ENST00000371843		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	CYP4Z2P	chr1	47364515	-	SPATA6	chr1	48918803	-
5UTR-5UTR	ENST00000505841	ENST00000396199		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	CYP4Z2P	chr1	47364515	-	SPATA6	chr1	48918803	-
5UTR-5UTR	ENST00000505841	ENST00000463938		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	CYP4Z2P	chr1	47364515	-	SPATA6	chr1	48918803	-
In-frame	ENST00000407775	ENST00000537875		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
In-frame	ENST00000407775	ENST00000309791		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
In-frame	ENST00000407775	ENST00000297848		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
In-frame	ENST00000407775	ENST00000247781		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
5CDS-3UTR	ENST00000407775	ENST00000432943		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000520492	ENST00000537875		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000520492	ENST00000309791		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000520492	ENST00000297848		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000520492	ENST00000247781		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3UTR	ENST00000520492	ENST00000432943		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000517361	ENST00000537875		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000517361	ENST00000309791		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000517361	ENST00000297848		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000517361	ENST00000247781		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3UTR	ENST00000517361	ENST00000432943		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000522296	ENST00000537875		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000522296	ENST00000309791		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000522296	ENST00000297848		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000522296	ENST00000247781		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3UTR	ENST00000522296	ENST00000432943		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000378472	ENST00000537875		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000378472	ENST00000309791		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000378472	ENST00000297848		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3CDS	ENST00000378472	ENST00000247781		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
intron-3UTR	ENST00000378472	ENST00000432943		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZFPM2	chr8	106331209	+	COL14A1	chr8	121180400	+
5UTR-3CDS	ENST00000314393	ENST00000537875		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZHX2	chr8	123794185	+	COL14A1	chr8	121180400	+
5UTR-3CDS	ENST00000314393	ENST00000309791		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZHX2	chr8	123794185	+	COL14A1	chr8	121180400	+
5UTR-3CDS	ENST00000314393	ENST00000297848		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZHX2	chr8	123794185	+	COL14A1	chr8	121180400	+
5UTR-3CDS	ENST00000314393	ENST00000247781		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZHX2	chr8	123794185	+	COL14A1	chr8	121180400	+
5UTR-3UTR	ENST00000314393	ENST00000432943		TCGA	LD	BRCA	TCGA-AC-A6IX-01A	ZHX2	chr8	123794185	+	COL14A1	chr8	121180400	+
In-frame	ENST00000593829	ENST00000261180		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	LSM4	chr19	18433828	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000593829	ENST00000549138		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	LSM4	chr19	18433828	-	TRHDE	chr12	72771775	+
In-frame	ENST00000252816	ENST00000261180		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	LSM4	chr19	18433828	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000252816	ENST00000549138		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	LSM4	chr19	18433828	-	TRHDE	chr12	72771775	+
5UTR-3CDS	ENST00000454876	ENST00000285046		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000454876	ENST00000543601		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-intron	ENST00000454876	ENST00000476851		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000360861	ENST00000285046		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000360861	ENST00000543601		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-intron	ENST00000360861	ENST00000476851		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000416216	ENST00000285046		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000416216	ENST00000543601		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
5UTR-intron	ENST00000416216	ENST00000476851		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
3UTR-3CDS	ENST00000484191	ENST00000285046		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
3UTR-3CDS	ENST00000484191	ENST00000543601		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
3UTR-intron	ENST00000484191	ENST00000476851		TCGA	LD	BRCA	TCGA-AC-A7VB-01A	SLC6A6	chr3	14457961	+	FGD5	chr3	14905635	+
In-frame	ENST00000167462	ENST00000424789		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000167462	ENST00000389520		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000375227	ENST00000424789		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000375227	ENST00000389520		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000392550	ENST00000424789		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000392550	ENST00000389520		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000578363	ENST00000424789		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000578363	ENST00000389520		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000577200	ENST00000424789		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
In-frame	ENST00000577200	ENST00000389520		TCGA	LD	BRCA	TCGA-AC-A8OP-01A	LLGL2	chr17	73559544	+	TANC2	chr17	61315175	+
Frame-shit	ENST00000375687	ENST00000562532		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000542461	ENST00000562532		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000375689	ENST00000562532		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000306058	ENST00000562532		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
3UTR-3CDS	ENST00000470145	ENST00000562532		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	ASXL1	chr20	30956926	+	XKR7	chr20	30582871	+
Frame-shit	ENST00000335221	ENST00000253247		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000335221	ENST00000581966		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000335221	ENST00000535137		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
Frame-shit	ENST00000321892	ENST00000253247		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000321892	ENST00000581966		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000321892	ENST00000535137		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
Frame-shit	ENST00000306378	ENST00000253247		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000306378	ENST00000581966		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000306378	ENST00000535137		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
Frame-shit	ENST00000424123	ENST00000253247		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000424123	ENST00000581966		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
5CDS-intron	ENST00000424123	ENST00000535137		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
intron-3CDS	ENST00000577770	ENST00000253247		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
intron-intron	ENST00000577770	ENST00000581966		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
intron-intron	ENST00000577770	ENST00000535137		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	BPTF	chr17	65928135	+	NOL11	chr17	65735632	+
Frame-shit	ENST00000401432	ENST00000406961		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000469850		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000405141		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000407230		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000538539		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000288599		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000348332		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000401432	ENST00000395856		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
In-frame	ENST00000403714	ENST00000406961		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000469850		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000405141		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000407230		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000538539		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000288599		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000348332		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000403714	ENST00000395856		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
In-frame	ENST00000402191	ENST00000406961		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000469850		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000405141		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000407230		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000538539		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000288599		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000348332		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000402191	ENST00000395856		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
In-frame	ENST00000405108	ENST00000406961		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000469850		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000405141		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000407230		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000538539		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000288599		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000348332		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
5CDS-intron	ENST00000405108	ENST00000395856		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	EFR3B	chr2	25367920	+	NCOA1	chr2	24962301	+
In-frame	ENST00000215832	ENST00000292778		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
In-frame	ENST00000215832	ENST00000398873		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
In-frame	ENST00000398822	ENST00000292778		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
In-frame	ENST00000398822	ENST00000398873		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
In-frame	ENST00000544786	ENST00000292778		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
In-frame	ENST00000544786	ENST00000398873		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
intron-3CDS	ENST00000491588	ENST00000292778		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
intron-3CDS	ENST00000491588	ENST00000398873		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MAPK1	chr22	22221612	-	YDJC	chr22	21983696	-
5UTR-intron	ENST00000423230	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000423230	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000423230	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000423230	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000423230	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000423230	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-3UTR	ENST00000423230	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000398656	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000398656	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000398656	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000398656	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000398656	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-intron	ENST00000398656	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5UTR-3UTR	ENST00000398656	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000534366	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000534366	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000534366	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000534366	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000534366	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000534366	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-3UTR	ENST00000534366	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000528919	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000528919	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000528919	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000528919	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000528919	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000528919	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-3UTR	ENST00000528919	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000326134	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000326134	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000326134	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000326134	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000326134	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000326134	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-3UTR	ENST00000326134	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000527071	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000527071	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000527071	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000527071	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000527071	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000527071	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-3UTR	ENST00000527071	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000544576	ENST00000454097		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000544576	ENST00000442058		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000544576	ENST00000358656		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000544576	ENST00000532158		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000544576	ENST00000532205		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-intron	ENST00000544576	ENST00000418203		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
intron-3UTR	ENST00000544576	ENST00000508587		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	MROH1	chr8	145202979	+	ZNF707	chr8	144791423	+
5CDS-intron	ENST00000458013	ENST00000461862		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
5CDS-intron	ENST00000458013	ENST00000368905		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
5CDS-intron	ENST00000368843	ENST00000461862		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
5CDS-intron	ENST00000368843	ENST00000368905		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
5CDS-intron	ENST00000368838	ENST00000461862		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
5CDS-intron	ENST00000368838	ENST00000368905		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
intron-intron	ENST00000482791	ENST00000461862		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
intron-intron	ENST00000482791	ENST00000368905		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	SNX27	chr1	151611595	+	SCNM1	chr1	151141462	+
In-frame	ENST00000398559	ENST00000398540		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000398559	ENST00000542259		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000398559	ENST00000497757		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000398559	ENST00000478263		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000543976	ENST00000398540		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000543976	ENST00000542259		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000543976	ENST00000497757		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
5CDS-intron	ENST00000543976	ENST00000478263		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
intron-3CDS	ENST00000489370	ENST00000398540		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
intron-3CDS	ENST00000489370	ENST00000542259		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
intron-intron	ENST00000489370	ENST00000497757		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
intron-intron	ENST00000489370	ENST00000478263		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	TMF1	chr3	69077377	-	FRMD4B	chr3	69362668	-
In-frame	ENST00000393792	ENST00000296933		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	UBTD2	chr5	171710600	-	FBXW11	chr5	171341409	-
5CDS-intron	ENST00000393792	ENST00000265094		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	UBTD2	chr5	171710600	-	FBXW11	chr5	171341409	-
5CDS-intron	ENST00000393792	ENST00000393802		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	UBTD2	chr5	171710600	-	FBXW11	chr5	171341409	-
5CDS-5UTR	ENST00000393792	ENST00000425623		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	UBTD2	chr5	171710600	-	FBXW11	chr5	171341409	-
5CDS-intron	ENST00000393792	ENST00000522891		TCGA	LD	BRCA	TCGA-AC-A8OQ-01A	UBTD2	chr5	171710600	-	FBXW11	chr5	171341409	-
5UTR-3CDS	ENST00000408952	ENST00000520296		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5UTR-3CDS	ENST00000408952	ENST00000427211		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5UTR-3CDS	ENST00000408952	ENST00000537107		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5UTR-5UTR	ENST00000408952	ENST00000454272		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5UTR-5UTR	ENST00000408952	ENST00000442470		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
In-frame	ENST00000400809	ENST00000520296		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
In-frame	ENST00000400809	ENST00000427211		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
Frame-shit	ENST00000400809	ENST00000537107		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5CDS-5UTR	ENST00000400809	ENST00000454272		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5CDS-5UTR	ENST00000400809	ENST00000442470		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
intron-3CDS	ENST00000505849	ENST00000520296		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
intron-3CDS	ENST00000505849	ENST00000427211		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
intron-3CDS	ENST00000505849	ENST00000537107		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
intron-5UTR	ENST00000505849	ENST00000454272		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
intron-5UTR	ENST00000505849	ENST00000442470		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
In-frame	ENST00000408918	ENST00000520296		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
In-frame	ENST00000408918	ENST00000427211		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
Frame-shit	ENST00000408918	ENST00000537107		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5CDS-5UTR	ENST00000408918	ENST00000454272		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
5CDS-5UTR	ENST00000408918	ENST00000442470		TCGA	LD	BRCA	TCGA-AC-A8OR-01A	CCNL2	chr1	1333613	-	ANKRD65	chr1	1354929	-
3UTR-3CDS	ENST00000525428	ENST00000340149		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000525428	ENST00000361507		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-5UTR	ENST00000525428	ENST00000526030		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000263309	ENST00000340149		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000263309	ENST00000361507		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-5UTR	ENST00000263309	ENST00000526030		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000525064	ENST00000340149		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000525064	ENST00000361507		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-5UTR	ENST00000525064	ENST00000526030		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000532069	ENST00000340149		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000532069	ENST00000361507		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-5UTR	ENST00000532069	ENST00000526030		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000528364	ENST00000340149		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-3CDS	ENST00000528364	ENST00000361507		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
3UTR-5UTR	ENST00000528364	ENST00000526030		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000533957	ENST00000340149		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000533957	ENST00000361507		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
intron-5UTR	ENST00000533957	ENST00000526030		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	CLNS1A	chr11	77330651	-	GAB2	chr11	77938097	-
In-frame	ENST00000356341	ENST00000353172		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000356341	ENST00000533144		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000530617	ENST00000353172		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
In-frame	ENST00000530617	ENST00000533144		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
In-frame	ENST00000278568	ENST00000353172		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000278568	ENST00000533144		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
In-frame	ENST00000528203	ENST00000353172		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000528203	ENST00000533144		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000525542	ENST00000353172		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000525542	ENST00000533144		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	PAK1	chr11	77090286	-	KCTD14	chr11	77728316	-
3UTR-3CDS	ENST00000524814	ENST00000541951		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-3CDS	ENST00000524814	ENST00000310571		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-3CDS	ENST00000524814	ENST00000535604		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-3CDS	ENST00000524814	ENST00000536003		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-3CDS	ENST00000524814	ENST00000544552		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-3CDS	ENST00000524814	ENST00000376384		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-intron	ENST00000524814	ENST00000543079		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-intron	ENST00000524814	ENST00000544909		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000539188	ENST00000541951		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000539188	ENST00000310571		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000539188	ENST00000535604		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000539188	ENST00000536003		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000539188	ENST00000544552		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000539188	ENST00000376384		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
5CDS-intron	ENST00000539188	ENST00000543079		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
5CDS-intron	ENST00000539188	ENST00000544909		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000312629	ENST00000541951		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000312629	ENST00000310571		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000312629	ENST00000535604		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000312629	ENST00000536003		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000312629	ENST00000544552		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
In-frame	ENST00000312629	ENST00000376384		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
5CDS-intron	ENST00000312629	ENST00000543079		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
5CDS-intron	ENST00000312629	ENST00000544909		TCGA	LD	BRCA	TCGA-AN-A03Y-01A	RPS6KB2	chr11	67196711	+	PAAF1	chr11	73627590	+
3UTR-3CDS	ENST00000361216	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
3UTR-3CDS	ENST00000361216	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
3UTR-intron	ENST00000361216	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-3CDS	ENST00000392233	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-3CDS	ENST00000392233	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-intron	ENST00000392233	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-3CDS	ENST00000459972	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-3CDS	ENST00000459972	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-intron	ENST00000459972	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	ATP1A2	chr1	160112554	+	CPB1	chr3	148562275	+
intron-3CDS	ENST00000331483	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-3CDS	ENST00000331483	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-intron	ENST00000331483	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
Frame-shit	ENST00000576390	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
Frame-shit	ENST00000576390	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
5CDS-intron	ENST00000576390	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-3CDS	ENST00000439918	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-3CDS	ENST00000439918	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-intron	ENST00000439918	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-3CDS	ENST00000472244	ENST00000491148		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-3CDS	ENST00000472244	ENST00000282957		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
intron-intron	ENST00000472244	ENST00000498639		TCGA	LD	BRCA	TCGA-AN-A041-01A	P4HB	chr17	79817176	-	CPB1	chr3	148559610	+
3UTR-3CDS	ENST00000254066	ENST00000545225		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000254066	ENST00000590720		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3UTR	ENST00000254066	ENST00000541124		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000254066	ENST00000592578		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000254066	ENST00000441946		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000254066	ENST00000293362		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000254066	ENST00000592169		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-3CDS	ENST00000394089	ENST00000545225		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-3CDS	ENST00000394089	ENST00000590720		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-3UTR	ENST00000394089	ENST00000541124		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000394089	ENST00000592578		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000394089	ENST00000441946		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000394089	ENST00000293362		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000394089	ENST00000592169		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000425707	ENST00000545225		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000425707	ENST00000590720		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3UTR	ENST00000425707	ENST00000541124		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000425707	ENST00000592578		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000425707	ENST00000441946		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000425707	ENST00000293362		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000425707	ENST00000592169		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000394086	ENST00000545225		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000394086	ENST00000590720		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3UTR	ENST00000394086	ENST00000541124		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394086	ENST00000592578		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394086	ENST00000441946		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394086	ENST00000293362		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394086	ENST00000592169		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000394081	ENST00000545225		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3CDS	ENST00000394081	ENST00000590720		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-3UTR	ENST00000394081	ENST00000541124		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394081	ENST00000592578		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394081	ENST00000441946		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394081	ENST00000293362		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
3UTR-intron	ENST00000394081	ENST00000592169		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-3CDS	ENST00000420042	ENST00000545225		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-3CDS	ENST00000420042	ENST00000590720		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-3UTR	ENST00000420042	ENST00000541124		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000420042	ENST00000592578		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000420042	ENST00000441946		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000420042	ENST00000293362		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
intron-intron	ENST00000420042	ENST00000592169		TCGA	LD	BRCA	TCGA-AN-A041-01A	RARA	chr17	38512898	+	PSME3	chr17	40989666	+
In-frame	ENST00000303545	ENST00000541428		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
In-frame	ENST00000303545	ENST00000379454		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000523897		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000522919		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000356457		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000518068		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000517903		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000445642		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000517847		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000522835		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000517856		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000389204		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000522603		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000379449		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5CDS-intron	ENST00000303545	ENST00000517661		TCGA	LD	BRCA	TCGA-AN-A041-01A	RNF139	chr8	125487531	+	ASPH	chr8	62566219	-
5UTR-5UTR	ENST00000352645	ENST00000321030		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
5UTR-intron	ENST00000352645	ENST00000419967		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
5UTR-intron	ENST00000352645	ENST00000391755		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
5UTR-intron	ENST00000352645	ENST00000498612		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
intron-5UTR	ENST00000351589	ENST00000321030		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
intron-intron	ENST00000351589	ENST00000419967		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
intron-intron	ENST00000351589	ENST00000391755		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
intron-intron	ENST00000351589	ENST00000498612		TCGA	LD	BRCA	TCGA-AN-A041-01A	ZC3H7B	chr22	41697776	+	PRPF31	chr19	54619064	+
intron-5UTR	ENST00000508736	ENST00000553127		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000508736	ENST00000321898		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000508736	ENST00000552918		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000508736	ENST00000547865		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-intron	ENST00000508736	ENST00000552557		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
5CDS-5UTR	ENST00000548825	ENST00000553127		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
5CDS-5UTR	ENST00000548825	ENST00000321898		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
5CDS-5UTR	ENST00000548825	ENST00000552918		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
5CDS-5UTR	ENST00000548825	ENST00000547865		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
5CDS-intron	ENST00000548825	ENST00000552557		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000261897	ENST00000553127		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000261897	ENST00000321898		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000261897	ENST00000552918		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000261897	ENST00000547865		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-intron	ENST00000261897	ENST00000552557		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000380281	ENST00000553127		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000380281	ENST00000321898		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000380281	ENST00000552918		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-5UTR	ENST00000380281	ENST00000547865		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-intron	ENST00000380281	ENST00000552557		TCGA	LD	BRCA	TCGA-AN-A049-01A	PRPF40B	chr12	50017376	+	SPATS2	chr12	49854553	+
intron-3CDS	ENST00000421834	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000421834	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000421834	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370769	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370769	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000370769	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000312431	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000312431	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000312431	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370754	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370754	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000370754	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370788	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370788	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000370788	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000361203	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000361203	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000361203	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000244364	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000244364	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000244364	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000446842	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000446842	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000446842	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000340834	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000340834	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000340834	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370765	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000370765	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000370765	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000518935	ENST00000325722		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-3CDS	ENST00000518935	ENST00000373266		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
intron-intron	ENST00000518935	ENST00000485551		TCGA	LD	BRCA	TCGA-AN-A04A-01A	DST	chr6	56557186	-	KIAA0319L	chr1	35900682	-
In-frame	ENST00000269886	ENST00000344663		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
In-frame	ENST00000269886	ENST00000591806		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-5UTR	ENST00000269886	ENST00000311401		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-5UTR	ENST00000269886	ENST00000415183		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-intron	ENST00000269886	ENST00000591453		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
In-frame	ENST00000598564	ENST00000344663		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
In-frame	ENST00000598564	ENST00000591806		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-5UTR	ENST00000598564	ENST00000311401		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-5UTR	ENST00000598564	ENST00000415183		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-intron	ENST00000598564	ENST00000591453		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
In-frame	ENST00000417295	ENST00000344663		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
In-frame	ENST00000417295	ENST00000591806		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-5UTR	ENST00000417295	ENST00000311401		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-5UTR	ENST00000417295	ENST00000415183		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
5CDS-intron	ENST00000417295	ENST00000591453		TCGA	LD	BRCA	TCGA-AN-A04A-01A	SH3GL1	chr19	4400321	-	MUM1	chr19	1357008	+
Frame-shit	ENST00000355938	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000355938	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000503641	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000503641	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000514808	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000514808	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000393366	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000393366	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000506855	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000506855	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
intron-3CDS	ENST00000513781	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
intron-3CDS	ENST00000513781	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A04C-01A	ATP5G1	chr17	46970818	+	SKAP1	chr17	46441176	-
Frame-shit	ENST00000246554	ENST00000357949		TCGA	LD	BRCA	TCGA-AN-A04C-01A	COX6B1	chr19	36142251	+	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000592141	ENST00000357949		TCGA	LD	BRCA	TCGA-AN-A04C-01A	COX6B1	chr19	36142251	+	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000392201	ENST00000357949		TCGA	LD	BRCA	TCGA-AN-A04C-01A	COX6B1	chr19	36142251	+	SERTAD1	chr19	40929453	-
3UTR-3CDS	ENST00000428783	ENST00000376873		TCGA	LD	BRCA	TCGA-AN-A04D-01A	EEF1DP3	chr13	32421076	+	CLDN10	chr13	96212386	+
3UTR-3CDS	ENST00000428783	ENST00000299339		TCGA	LD	BRCA	TCGA-AN-A04D-01A	EEF1DP3	chr13	32421076	+	CLDN10	chr13	96212386	+
3UTR-intron	ENST00000428783	ENST00000376855		TCGA	LD	BRCA	TCGA-AN-A04D-01A	EEF1DP3	chr13	32421076	+	CLDN10	chr13	96212386	+
intron-3CDS	ENST00000380121	ENST00000533490		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000380121	ENST00000345108		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000504114	ENST00000533490		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000504114	ENST00000345108		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000357505	ENST00000533490		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000357505	ENST00000345108		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000399396	ENST00000533490		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
intron-3CDS	ENST00000399396	ENST00000345108		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
In-frame	ENST00000446957	ENST00000533490		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
In-frame	ENST00000446957	ENST00000345108		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
Frame-shit	ENST00000267068	ENST00000533490		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
Frame-shit	ENST00000267068	ENST00000345108		TCGA	LD	BRCA	TCGA-AN-A04D-01A	N4BP2L2	chr13	33101545	-	ZAR1L	chr13	32878159	-
5CDS-5UTR	ENST00000317133	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000317133	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000317133	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000317133	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000317133	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375741	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375741	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375741	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375741	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375741	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375739	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375739	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375739	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375739	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375739	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000370623	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000370623	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000370623	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000370623	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000370623	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5UTR-5UTR	ENST00000544132	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5UTR-5UTR	ENST00000544132	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5UTR-5UTR	ENST00000544132	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5UTR-intron	ENST00000544132	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5UTR-intron	ENST00000544132	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000218789	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000218789	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000218789	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000218789	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000218789	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375736	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375736	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375736	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375736	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375736	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000426073	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000426073	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000426073	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000426073	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000426073	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375737	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375737	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375737	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375737	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375737	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375723	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375723	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-5UTR	ENST00000375723	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375723	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
5CDS-intron	ENST00000375723	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-5UTR	ENST00000478679	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-5UTR	ENST00000478679	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-5UTR	ENST00000478679	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-intron	ENST00000478679	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-intron	ENST00000478679	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-5UTR	ENST00000483189	ENST00000372308		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-5UTR	ENST00000483189	ENST00000428376		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-5UTR	ENST00000483189	ENST00000398636		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-intron	ENST00000483189	ENST00000372313		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
intron-intron	ENST00000483189	ENST00000419470		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ARHGEF7	chr13	111870227	+	SFTPA1	chr10	81371559	+
Frame-shit	ENST00000589222	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000589222	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
5CDS-intron	ENST00000589222	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000407086	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000407086	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
5CDS-intron	ENST00000407086	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000390652	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000390652	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
5CDS-intron	ENST00000390652	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000408905	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000408905	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
5CDS-intron	ENST00000408905	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000588462	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
Frame-shit	ENST00000588462	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
5CDS-intron	ENST00000588462	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-3CDS	ENST00000585744	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-3CDS	ENST00000585744	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-intron	ENST00000585744	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-3CDS	ENST00000588874	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-3CDS	ENST00000588874	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-intron	ENST00000588874	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-3CDS	ENST00000585812	ENST00000265748		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-3CDS	ENST00000585812	ENST00000396068		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
intron-intron	ENST00000585812	ENST00000495714		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	BCAS3	chr17	58824640	+	ANLN	chr7	36489274	+
5UTR-3CDS	ENST00000397420	ENST00000382172		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
5UTR-intron	ENST00000397420	ENST00000469167		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
5UTR-3CDS	ENST00000322008	ENST00000382172		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
5UTR-intron	ENST00000322008	ENST00000469167		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
5UTR-3CDS	ENST00000397421	ENST00000382172		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
5UTR-intron	ENST00000397421	ENST00000469167		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
intron-3CDS	ENST00000528011	ENST00000382172		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
intron-intron	ENST00000528011	ENST00000469167		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
intron-3CDS	ENST00000525181	ENST00000382172		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
intron-intron	ENST00000525181	ENST00000469167		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	CD151	chr11	833026	+	MIPEP	chr13	24334356	-
Frame-shit	ENST00000251808	ENST00000372188		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
In-frame	ENST00000251808	ENST00000372187		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
In-frame	ENST00000251808	ENST00000372185		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
In-frame	ENST00000251808	ENST00000372181		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
5UTR-3CDS	ENST00000395927	ENST00000372188		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
5UTR-3CDS	ENST00000395927	ENST00000372187		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
5UTR-3CDS	ENST00000395927	ENST00000372185		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
5UTR-3CDS	ENST00000395927	ENST00000372181		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
intron-3CDS	ENST00000517674	ENST00000372188		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
intron-3CDS	ENST00000517674	ENST00000372187		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
intron-3CDS	ENST00000517674	ENST00000372185		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
intron-3CDS	ENST00000517674	ENST00000372181		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	GRHL2	chr8	102505017	+	FAM213A	chr10	82191742	+
5UTR-3CDS	ENST00000319410	ENST00000262144		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	KARS	chr16	75681476	-	WDR59	chr16	74999720	-
5UTR-5UTR	ENST00000319410	ENST00000562331		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	KARS	chr16	75681476	-	WDR59	chr16	74999720	-
In-frame	ENST00000302445	ENST00000262144		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	KARS	chr16	75681476	-	WDR59	chr16	74999720	-
5CDS-5UTR	ENST00000302445	ENST00000562331		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	KARS	chr16	75681476	-	WDR59	chr16	74999720	-
5UTR-3CDS	ENST00000568378	ENST00000262144		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	KARS	chr16	75681476	-	WDR59	chr16	74999720	-
5UTR-5UTR	ENST00000568378	ENST00000562331		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	KARS	chr16	75681476	-	WDR59	chr16	74999720	-
5CDS-5UTR	ENST00000372371	ENST00000391878		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
5CDS-5UTR	ENST00000372371	ENST00000343537		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
5CDS-intron	ENST00000372371	ENST00000391879		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
5CDS-intron	ENST00000372371	ENST00000498843		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
intron-5UTR	ENST00000484760	ENST00000391878		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
intron-5UTR	ENST00000484760	ENST00000343537		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
intron-intron	ENST00000484760	ENST00000391879		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
intron-intron	ENST00000484760	ENST00000498843		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	POLR3A	chr10	79773408	-	TP53BP2	chr1	224009069	-
5CDS-intron	ENST00000017003	ENST00000541920		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000017003	ENST00000300441		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000017003	ENST00000504392		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000017003	ENST00000427954		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000017003	ENST00000502667		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
5CDS-intron	ENST00000017003	ENST00000506085		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-intron	ENST00000507602	ENST00000541920		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-intron	ENST00000507602	ENST00000300441		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-intron	ENST00000507602	ENST00000504392		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-intron	ENST00000507602	ENST00000427954		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-intron	ENST00000507602	ENST00000502667		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-intron	ENST00000507602	ENST00000506085		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	XYLT2	chr17	48435901	+	ACSF2	chr17	48538038	+
intron-3CDS	ENST00000527985	ENST00000264162		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ZDHHC5	chr11	57440666	+	LCT	chr2	136555708	-
Frame-shit	ENST00000287169	ENST00000264162		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ZDHHC5	chr11	57440666	+	LCT	chr2	136555708	-
intron-3CDS	ENST00000527090	ENST00000264162		TCGA	LD	BRCA	TCGA-AN-A0AJ-01A	ZDHHC5	chr11	57440666	+	LCT	chr2	136555708	-
Frame-shit	ENST00000375976	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000375976	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000375976	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000375976	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375976	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000211379	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000211379	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000211379	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000211379	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000211379	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000439687	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000439687	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000439687	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000439687	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000439687	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000404765	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000404765	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000404765	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000404765	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000404765	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000375964	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000375964	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000375964	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000375964	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000375964	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000362049	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
Frame-shit	ENST00000362049	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000362049	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-5UTR	ENST00000362049	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5CDS-intron	ENST00000362049	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000470875	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000470875	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000470875	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000470875	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000470875	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000442479	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000442479	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000442479	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000442479	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000442479	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000449450	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000449450	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000449450	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000449450	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000449450	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000417144	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000417144	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000417144	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000417144	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000417144	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000551350	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000551350	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000551350	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000551350	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000551350	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000497694	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000497694	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000497694	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000497694	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000497694	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000422756	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000422756	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000422756	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000422756	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000422756	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000425649	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000425649	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000425649	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000425649	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000425649	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000434446	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000434446	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000434446	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000434446	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000434446	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000552467	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000552467	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000552467	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000552467	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552467	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000463220	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000463220	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000463220	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000463220	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000463220	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000413922	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000413922	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000413922	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000413922	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000413922	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000454478	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000454478	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000454478	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000454478	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000454478	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000412012	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000412012	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000412012	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000412012	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000412012	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000546462	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000546462	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000546462	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000546462	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000546462	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000460147	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000460147	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000460147	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000460147	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460147	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000383446	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000383446	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000383446	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000383446	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383446	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000361076	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000361076	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000361076	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000361076	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000361076	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000383448	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000383448	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000383448	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000383448	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000383448	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000552605	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000552605	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000552605	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000552605	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552605	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000471376	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000471376	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000471376	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000471376	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000471376	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000415373	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000415373	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000415373	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000415373	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415373	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000444402	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000444402	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000444402	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000444402	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000444402	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000415345	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000415345	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000415345	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000415345	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000415345	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000550393	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000550393	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000550393	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000550393	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000550393	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000461852	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000461852	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000461852	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000461852	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000461852	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000443182	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000443182	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000443182	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000443182	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000443182	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000451932	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000451932	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000451932	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000451932	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000451932	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000419847	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000419847	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000419847	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000419847	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000419847	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000552116	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000552116	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000552116	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000552116	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000552116	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000460429	ENST00000375858		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-3CDS	ENST00000460429	ENST00000375860		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000460429	ENST00000474395		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-5UTR	ENST00000460429	ENST00000383237		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000431114		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000473902		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000549965		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000455753		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000479313		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000549664		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000458081		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000478907		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000550467		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000383425		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000494386		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000548957		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000418117		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000481927		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000548179		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000324540		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000484710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
intron-intron	ENST00000460429	ENST00000551004		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	BAG6	chr6	31616454	-	LY6G5C	chr6	31644897	-
5UTR-5UTR	ENST00000295966	ENST00000378142		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-intron	ENST00000295966	ENST00000378138		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
intron-5UTR	ENST00000482387	ENST00000378142		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
intron-intron	ENST00000482387	ENST00000378138		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-5UTR	ENST00000472469	ENST00000378142		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-intron	ENST00000472469	ENST00000378138		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-5UTR	ENST00000491845	ENST00000378142		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-intron	ENST00000491845	ENST00000378138		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-5UTR	ENST00000478363	ENST00000378142		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
5UTR-intron	ENST00000478363	ENST00000378138		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	C3orf67	chr3	59025283	-	GPR34	chrX	41554808	+
In-frame	ENST00000369061	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369061	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369061	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369061	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369061	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369061	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369061	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000357555	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000357555	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000357555	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000357555	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000357555	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000357555	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000357555	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000358487	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000358487	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000358487	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000358487	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000358487	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000358487	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000358487	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000356226	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000356226	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000356226	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000356226	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000356226	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000356226	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000356226	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369060	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369060	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369060	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369060	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369060	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369060	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369060	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369059	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369059	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369059	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369059	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000369059	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369059	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369059	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000346997	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000346997	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000346997	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000346997	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000346997	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000346997	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000346997	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000457416	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000457416	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000457416	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000457416	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000457416	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000457416	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000457416	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000351936	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000351936	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000351936	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000351936	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000351936	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000351936	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000351936	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000360144	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000360144	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000360144	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000360144	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000360144	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000360144	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000360144	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369056	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369056	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369056	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369056	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
In-frame	ENST00000369056	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369056	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000369056	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000490349	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000490349	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000490349	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000490349	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000490349	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-intron	ENST00000490349	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-intron	ENST00000490349	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000359354	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000359354	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000359354	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000359354	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-3CDS	ENST00000359354	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-intron	ENST00000359354	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
intron-intron	ENST00000359354	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000478859	ENST00000369331		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000478859	ENST00000369321		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000478859	ENST00000345633		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000478859	ENST00000369318		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000478859	ENST00000369315		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000478859	ENST00000452490		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
5CDS-intron	ENST00000478859	ENST00000468790		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	FGFR2	chr10	123243212	-	CASP7	chr10	115457253	+
Frame-shit	ENST00000347136	ENST00000376634		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000347136	ENST00000376636		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000347136	ENST00000360280		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000347136	ENST00000357409		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000347136	ENST00000423463		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000347136	ENST00000484581		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000347136	ENST00000376646		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372406	ENST00000376634		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372406	ENST00000376636		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372406	ENST00000360280		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372406	ENST00000357409		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000372406	ENST00000423463		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000372406	ENST00000484581		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000372406	ENST00000376646		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372410	ENST00000376634		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372410	ENST00000376636		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372410	ENST00000360280		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
Frame-shit	ENST00000372410	ENST00000357409		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000372410	ENST00000423463		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000372410	ENST00000484581		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-intron	ENST00000372410	ENST00000376646		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-3CDS	ENST00000415344	ENST00000376634		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-3CDS	ENST00000415344	ENST00000376636		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-3CDS	ENST00000415344	ENST00000360280		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-3CDS	ENST00000415344	ENST00000357409		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-intron	ENST00000415344	ENST00000423463		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-intron	ENST00000415344	ENST00000484581		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
intron-intron	ENST00000415344	ENST00000376646		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	GPR107	chr9	132854660	+	VPS13A	chr9	79946926	+
5CDS-3UTR	ENST00000446906	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000446906	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000446906	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000446906	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000446906	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000446906	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-intron	ENST00000446906	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377072	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377072	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377072	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377072	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377072	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377072	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-intron	ENST00000377072	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000307729	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000307729	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000307729	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000307729	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000307729	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000307729	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-intron	ENST00000307729	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377059	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377059	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377059	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377059	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377059	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-3UTR	ENST00000377059	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5CDS-intron	ENST00000377059	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000495130	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000495130	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000495130	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000495130	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000495130	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000495130	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-intron	ENST00000495130	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377100	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377100	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377100	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377100	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377100	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377100	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-intron	ENST00000377100	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377091	ENST00000367302		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377091	ENST00000367296		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377091	ENST00000295624		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377091	ENST00000367297		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377091	ENST00000367300		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-3UTR	ENST00000377091	ENST00000367295		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
intron-intron	ENST00000377091	ENST00000469130		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	MLLT10	chr10	21906136	+	NAV1	chr1	201790755	+
5UTR-3CDS	ENST00000381095	ENST00000252699		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-3CDS	ENST00000381095	ENST00000424234		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-intron	ENST00000381095	ENST00000390009		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-intron	ENST00000381095	ENST00000497637		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000381093	ENST00000252699		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000381093	ENST00000424234		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000381093	ENST00000390009		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000381093	ENST00000497637		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000275857	ENST00000252699		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000275857	ENST00000424234		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000275857	ENST00000390009		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000275857	ENST00000497637		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-3CDS	ENST00000381092	ENST00000252699		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-3CDS	ENST00000381092	ENST00000424234		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-intron	ENST00000381092	ENST00000390009		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
5UTR-intron	ENST00000381092	ENST00000497637		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000538097	ENST00000252699		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000538097	ENST00000424234		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000538097	ENST00000390009		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000538097	ENST00000497637		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000469740	ENST00000252699		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000469740	ENST00000424234		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000469740	ENST00000390009		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000469740	ENST00000497637		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	NLGN4X	chrX	6146582	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000448838	ENST00000241052		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
5CDS-3UTR	ENST00000448838	ENST00000534710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
Frame-shit	ENST00000227868	ENST00000241052		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
5CDS-3UTR	ENST00000227868	ENST00000534710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
intron-3CDS	ENST00000430469	ENST00000241052		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
intron-3UTR	ENST00000430469	ENST00000534710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
intron-3CDS	ENST00000477173	ENST00000241052		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
intron-3UTR	ENST00000477173	ENST00000534710		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PDHX	chr11	34982065	+	CAT	chr11	34492505	+
In-frame	ENST00000541509	ENST00000396392		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
In-frame	ENST00000541509	ENST00000396396		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
5CDS-intron	ENST00000541509	ENST00000604870		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
In-frame	ENST00000265382	ENST00000396392		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
In-frame	ENST00000265382	ENST00000396396		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
5CDS-intron	ENST00000265382	ENST00000604870		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
intron-3CDS	ENST00000474356	ENST00000396392		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
intron-3CDS	ENST00000474356	ENST00000396396		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
intron-intron	ENST00000474356	ENST00000604870		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	PIP5K1B	chr9	71555706	+	PGM5	chr9	71080009	+
5CDS-5UTR	ENST00000254193	ENST00000561177		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5CDS-5UTR	ENST00000254193	ENST00000348070		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5CDS-5UTR	ENST00000254193	ENST00000358417		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5CDS-intron	ENST00000254193	ENST00000344273		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5CDS-intron	ENST00000254193	ENST00000398181		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5CDS-intron	ENST00000254193	ENST00000331826		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5UTR-5UTR	ENST00000560856	ENST00000561177		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5UTR-5UTR	ENST00000560856	ENST00000348070		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5UTR-5UTR	ENST00000560856	ENST00000358417		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5UTR-intron	ENST00000560856	ENST00000344273		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5UTR-intron	ENST00000560856	ENST00000398181		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
5UTR-intron	ENST00000560856	ENST00000331826		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	SNRPA1	chr15	101832167	-	PCSK6	chr15	101847530	-
Frame-shit	ENST00000334379	ENST00000350082		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
Frame-shit	ENST00000334379	ENST00000356971		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
Frame-shit	ENST00000368332	ENST00000350082		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
Frame-shit	ENST00000368332	ENST00000356971		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
Frame-shit	ENST00000450358	ENST00000350082		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
Frame-shit	ENST00000450358	ENST00000356971		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
intron-3CDS	ENST00000489934	ENST00000350082		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
intron-3CDS	ENST00000489934	ENST00000356971		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMT11	chr6	126307768	+	ICK	chr6	52884157	-
intron-intron	ENST00000476901	ENST00000381031		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
intron-intron	ENST00000476901	ENST00000445282		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000290846	ENST00000381031		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000290846	ENST00000445282		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000381019	ENST00000381031		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000381019	ENST00000445282		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000424260	ENST00000381031		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000424260	ENST00000445282		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TRMU	chr22	46739265	+	TTC38	chr22	46688100	+
5UTR-3CDS	ENST00000477524	ENST00000370608		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TTLL7	chr1	84369762	-	MCOLN2	chr1	85403765	-
5UTR-3CDS	ENST00000477524	ENST00000284027		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TTLL7	chr1	84369762	-	MCOLN2	chr1	85403765	-
5UTR-5UTR	ENST00000477524	ENST00000531325		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TTLL7	chr1	84369762	-	MCOLN2	chr1	85403765	-
Frame-shit	ENST00000260505	ENST00000370608		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TTLL7	chr1	84369762	-	MCOLN2	chr1	85403765	-
Frame-shit	ENST00000260505	ENST00000284027		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TTLL7	chr1	84369762	-	MCOLN2	chr1	85403765	-
5CDS-5UTR	ENST00000260505	ENST00000531325		TCGA	LD	BRCA	TCGA-AN-A0AL-01A	TTLL7	chr1	84369762	-	MCOLN2	chr1	85403765	-
intron-3CDS	ENST00000548241	ENST00000262764		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ANKRD52	chr12	56645799	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000548241	ENST00000329897		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ANKRD52	chr12	56645799	-	PGS1	chr17	76411033	+
intron-3UTR	ENST00000548241	ENST00000588281		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ANKRD52	chr12	56645799	-	PGS1	chr17	76411033	+
Frame-shit	ENST00000267116	ENST00000262764		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ANKRD52	chr12	56645799	-	PGS1	chr17	76411033	+
Frame-shit	ENST00000267116	ENST00000329897		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ANKRD52	chr12	56645799	-	PGS1	chr17	76411033	+
5CDS-3UTR	ENST00000267116	ENST00000588281		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ANKRD52	chr12	56645799	-	PGS1	chr17	76411033	+
Frame-shit	ENST00000369162	ENST00000413795		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
Frame-shit	ENST00000369162	ENST00000369138		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
Frame-shit	ENST00000369162	ENST00000421544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000369162	ENST00000358361		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000369162	ENST00000318991		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000369162	ENST00000369137		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000369162	ENST00000369134		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
Frame-shit	ENST00000522650	ENST00000413795		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
Frame-shit	ENST00000522650	ENST00000369138		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
Frame-shit	ENST00000522650	ENST00000421544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000522650	ENST00000358361		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000522650	ENST00000318991		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000522650	ENST00000369137		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
5CDS-intron	ENST00000522650	ENST00000369134		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-3CDS	ENST00000369143	ENST00000413795		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-3CDS	ENST00000369143	ENST00000369138		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-3CDS	ENST00000369143	ENST00000421544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-intron	ENST00000369143	ENST00000358361		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-intron	ENST00000369143	ENST00000318991		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-intron	ENST00000369143	ENST00000369137		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-intron	ENST00000369143	ENST00000369134		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ASCC3	chr6	101214441	-	GRIK2	chr6	102247523	+
intron-3CDS	ENST00000576599	ENST00000330261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
intron-intron	ENST00000576599	ENST00000573182		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
intron-intron	ENST00000576599	ENST00000570394		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
In-frame	ENST00000320865	ENST00000330261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000320865	ENST00000573182		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000320865	ENST00000570394		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
intron-3CDS	ENST00000571954	ENST00000330261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
intron-intron	ENST00000571954	ENST00000573182		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
intron-intron	ENST00000571954	ENST00000570394		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B3GNTL1	chr17	81009613	-	PPP1R27	chr17	79792709	-
Frame-shit	ENST00000371711	ENST00000244043		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B4GALT5	chr20	48330113	-	PTGIS	chr20	48166726	-
5CDS-5UTR	ENST00000371711	ENST00000478971		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	B4GALT5	chr20	48330113	-	PTGIS	chr20	48166726	-
5UTR-3CDS	ENST00000352393	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000352393	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000352393	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000352393	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000317677	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000317677	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000317677	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000317677	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397445	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397445	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397445	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397445	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000317619	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000317619	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000317619	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000317619	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397443	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397443	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397443	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000397443	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397446	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397446	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397446	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397446	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397442	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397442	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397442	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000397442	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000475146	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000475146	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000475146	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
intron-3CDS	ENST00000475146	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPNE1	chr20	34252682	-	LPO	chr17	56344710	+
Frame-shit	ENST00000435070	ENST00000552032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000435070	ENST00000547771		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000435070	ENST00000299350		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000435070	ENST00000535034		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000456847	ENST00000552032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000456847	ENST00000547771		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000456847	ENST00000299350		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000456847	ENST00000535034		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000266679	ENST00000552032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000266679	ENST00000547771		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000266679	ENST00000299350		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000266679	ENST00000535034		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
3UTR-3CDS	ENST00000550987	ENST00000552032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
3UTR-3CDS	ENST00000550987	ENST00000547771		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
3UTR-intron	ENST00000550987	ENST00000299350		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
3UTR-intron	ENST00000550987	ENST00000535034		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000551516	ENST00000552032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000551516	ENST00000547771		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000551516	ENST00000299350		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000551516	ENST00000535034		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	CPSF6	chr12	69633486	+	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000466152	ENST00000365032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	DPM1	chr20	49571723	-	SNHG11	chr20	37076109	+
5CDS-intron	ENST00000371588	ENST00000365032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	DPM1	chr20	49571723	-	SNHG11	chr20	37076109	+
5CDS-intron	ENST00000371582	ENST00000365032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	DPM1	chr20	49571723	-	SNHG11	chr20	37076109	+
5CDS-intron	ENST00000371583	ENST00000365032		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	DPM1	chr20	49571723	-	SNHG11	chr20	37076109	+
5UTR-3CDS	ENST00000299293	ENST00000372141		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000299293	ENST00000404547		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000299293	ENST00000372142		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000299293	ENST00000404576		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000299293	ENST00000556918		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-5UTR	ENST00000299293	ENST00000537893		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-5UTR	ENST00000299293	ENST00000545131		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000549921	ENST00000372141		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000549921	ENST00000404547		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000549921	ENST00000372142		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000549921	ENST00000404576		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000549921	ENST00000556918		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-5UTR	ENST00000549921	ENST00000537893		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-5UTR	ENST00000549921	ENST00000545131		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-3CDS	ENST00000550389	ENST00000372141		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-3CDS	ENST00000550389	ENST00000404547		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-3CDS	ENST00000550389	ENST00000372142		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-3CDS	ENST00000550389	ENST00000404576		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-3CDS	ENST00000550389	ENST00000556918		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-5UTR	ENST00000550389	ENST00000537893		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
intron-5UTR	ENST00000550389	ENST00000545131		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000397997	ENST00000372141		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000397997	ENST00000404547		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000397997	ENST00000372142		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000397997	ENST00000404576		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-3CDS	ENST00000397997	ENST00000556918		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-5UTR	ENST00000397997	ENST00000537893		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
5UTR-5UTR	ENST00000397997	ENST00000545131		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	FRS2	chr12	69925836	+	NRG3	chr10	84625167	+
In-frame	ENST00000308330	ENST00000261267		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
In-frame	ENST00000308330	ENST00000549690		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000308330	ENST00000548839		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000541171	ENST00000261267		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000541171	ENST00000549690		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000541171	ENST00000548839		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
In-frame	ENST00000379484	ENST00000540582		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
In-frame	ENST00000379484	ENST00000374491		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
In-frame	ENST00000379484	ENST00000374492		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
In-frame	ENST00000379484	ENST00000541621		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
In-frame	ENST00000379484	ENST00000542871		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000365779	ENST00000540582		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000365779	ENST00000374491		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000365779	ENST00000374492		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000365779	ENST00000541621		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000365779	ENST00000542871		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000465888	ENST00000540582		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000465888	ENST00000374491		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000465888	ENST00000374492		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000465888	ENST00000541621		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
intron-3CDS	ENST00000465888	ENST00000542871		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MBTPS2	chrX	21896810	+	EDEM2	chr20	33714178	-
Frame-shit	ENST00000264156	ENST00000264161		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MCM6	chr2	136622583	-	DARS	chr2	136664977	-
Frame-shit	ENST00000264156	ENST00000537273		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MCM6	chr2	136622583	-	DARS	chr2	136664977	-
5CDS-intron	ENST00000264156	ENST00000463008		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MCM6	chr2	136622583	-	DARS	chr2	136664977	-
5UTR-3CDS	ENST00000492091	ENST00000264161		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MCM6	chr2	136622583	-	DARS	chr2	136664977	-
5UTR-3CDS	ENST00000492091	ENST00000537273		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MCM6	chr2	136622583	-	DARS	chr2	136664977	-
5UTR-intron	ENST00000492091	ENST00000463008		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MCM6	chr2	136622583	-	DARS	chr2	136664977	-
In-frame	ENST00000540418	ENST00000266674		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
In-frame	ENST00000540418	ENST00000536515		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
In-frame	ENST00000540418	ENST00000540815		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000303145	ENST00000266674		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000303145	ENST00000536515		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000303145	ENST00000540815		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000411698	ENST00000266674		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000411698	ENST00000536515		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000411698	ENST00000540815		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000393543	ENST00000266674		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000393543	ENST00000536515		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000393543	ENST00000540815		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000430606	ENST00000266674		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000430606	ENST00000536515		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000430606	ENST00000540815		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000545724	ENST00000266674		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000545724	ENST00000536515		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000545724	ENST00000540815		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM1	chr12	68690703	-	LGR5	chr12	71898394	+
In-frame	ENST00000462284	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000356290	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000540827	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
In-frame	ENST00000258149	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000428863	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000393412	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
In-frame	ENST00000258148	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000544561	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000393410	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000393413	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000517852	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000545204	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
In-frame	ENST00000350057	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000360430	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000299252	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000348801	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000478070	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-3CDS	ENST00000544125	ENST00000332707		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MDM2	chr12	69222710	+	XPOT	chr12	64833023	+
intron-5UTR	ENST00000317552	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000317552	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-intron	ENST00000317552	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000453318	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000453318	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-intron	ENST00000453318	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000380779	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000380779	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-intron	ENST00000380779	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000380780	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000380780	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-intron	ENST00000380780	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
5UTR-5UTR	ENST00000380785	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
5UTR-5UTR	ENST00000380785	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
5UTR-intron	ENST00000380785	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
5UTR-5UTR	ENST00000380787	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
5UTR-5UTR	ENST00000380787	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
5UTR-intron	ENST00000380787	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000380782	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000380782	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-intron	ENST00000380782	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000479925	ENST00000380420		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-5UTR	ENST00000479925	ENST00000380421		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
intron-intron	ENST00000479925	ENST00000476381		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	MID1	chrX	10851673	-	PIR	chrX	15509432	-
In-frame	ENST00000378165	ENST00000378076		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
5CDS-5UTR	ENST00000378165	ENST00000477064		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
In-frame	ENST00000378150	ENST00000378076		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
5CDS-5UTR	ENST00000378150	ENST00000477064		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
In-frame	ENST00000535341	ENST00000378076		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
5CDS-5UTR	ENST00000535341	ENST00000477064		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
intron-3CDS	ENST00000466201	ENST00000378076		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
intron-5UTR	ENST00000466201	ENST00000477064		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
In-frame	ENST00000540259	ENST00000378076		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
5CDS-5UTR	ENST00000540259	ENST00000477064		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	NMT2	chr10	15170349	-	ITGA8	chr10	15639298	-
Frame-shit	ENST00000374012	ENST00000373913		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
Frame-shit	ENST00000374012	ENST00000401952		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
Frame-shit	ENST00000374012	ENST00000373907		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
Frame-shit	ENST00000374012	ENST00000339266		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000374012	ENST00000475894		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000374012	ENST00000340491		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
3UTR-3CDS	ENST00000439301	ENST00000373913		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
3UTR-3CDS	ENST00000439301	ENST00000401952		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
3UTR-3CDS	ENST00000439301	ENST00000373907		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
3UTR-3CDS	ENST00000439301	ENST00000339266		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
3UTR-intron	ENST00000439301	ENST00000475894		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
3UTR-intron	ENST00000439301	ENST00000340491		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000481202	ENST00000373913		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000481202	ENST00000401952		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000481202	ENST00000373907		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000481202	ENST00000339266		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
intron-intron	ENST00000481202	ENST00000475894		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
intron-intron	ENST00000481202	ENST00000340491		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PHF20	chr20	34502119	+	DLGAP4	chr20	35071130	+
5CDS-5UTR	ENST00000379068	ENST00000229201		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
5CDS-5UTR	ENST00000379068	ENST00000553532		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
5CDS-5UTR	ENST00000379068	ENST00000554616		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
5CDS-5UTR	ENST00000379059	ENST00000229201		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
5CDS-5UTR	ENST00000379059	ENST00000553532		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
5CDS-5UTR	ENST00000379059	ENST00000554616		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
intron-5UTR	ENST00000493342	ENST00000229201		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
intron-5UTR	ENST00000493342	ENST00000553532		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
intron-5UTR	ENST00000493342	ENST00000554616		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	POLA1	chrX	24735875	+	TIMELESS	chr12	56828015	-
intron-3CDS	ENST00000563298	ENST00000268099		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PPCDC	chr15	75320794	+	SCAMP2	chr15	75146990	-
In-frame	ENST00000342932	ENST00000268099		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PPCDC	chr15	75320794	+	SCAMP2	chr15	75146990	-
In-frame	ENST00000564923	ENST00000268099		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PPCDC	chr15	75320794	+	SCAMP2	chr15	75146990	-
In-frame	ENST00000568649	ENST00000268099		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PPCDC	chr15	75320794	+	SCAMP2	chr15	75146990	-
In-frame	ENST00000567336	ENST00000268099		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PPCDC	chr15	75320794	+	SCAMP2	chr15	75146990	-
intron-3CDS	ENST00000563393	ENST00000268099		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	PPCDC	chr15	75320794	+	SCAMP2	chr15	75146990	-
In-frame	ENST00000261263	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RAB21	chr12	72164479	+	MDM1	chr12	68696652	-
In-frame	ENST00000261263	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RAB21	chr12	72164479	+	MDM1	chr12	68696652	-
In-frame	ENST00000261263	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RAB21	chr12	72164479	+	MDM1	chr12	68696652	-
5CDS-intron	ENST00000261263	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RAB21	chr12	72164479	+	MDM1	chr12	68696652	-
5CDS-intron	ENST00000261263	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RAB21	chr12	72164479	+	MDM1	chr12	68696652	-
5CDS-intron	ENST00000261263	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RAB21	chr12	72164479	+	MDM1	chr12	68696652	-
5UTR-3CDS	ENST00000374114	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374114	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374114	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374114	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000359646	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000359646	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000359646	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000359646	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374104	ENST00000582328		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374104	ENST00000421678		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374104	ENST00000262290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000374104	ENST00000543544		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RBM12	chr20	34252682	-	LPO	chr17	56344710	+
5UTR-3CDS	ENST00000389760	ENST00000445478		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000389760	ENST00000397625		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000389760	ENST00000585429		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000313080	ENST00000445478		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000313080	ENST00000397625		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000313080	ENST00000585429		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000591885	ENST00000445478		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000591885	ENST00000397625		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000591885	ENST00000585429		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000592378	ENST00000445478		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000592378	ENST00000397625		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5UTR-3CDS	ENST00000592378	ENST00000585429		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RHBDF2	chr17	74483794	-	JMJD6	chr17	74714942	-
5CDS-intron	ENST00000536255	ENST00000368615		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000536255	ENST00000392638		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000344079		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000356571		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000368614		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000368613		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000368612		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000368610		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000536255	ENST00000432555		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000536255	ENST00000475747		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000368615		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000381208	ENST00000392638		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000344079		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000356571		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000368614		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000368613		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000368612		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000368610		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381208	ENST00000432555		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000381208	ENST00000475747		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000368615		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000381209	ENST00000392638		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000344079		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000356571		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000368614		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000368613		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000368612		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000368610		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000381209	ENST00000432555		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000381209	ENST00000475747		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000368615		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000327154	ENST00000392638		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000344079		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000356571		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000368614		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000368613		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000368612		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000368610		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000327154	ENST00000432555		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000327154	ENST00000475747		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000368615		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000405578	ENST00000392638		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000344079		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000356571		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000368614		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000368613		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000368612		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000368610		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000405578	ENST00000432555		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000405578	ENST00000475747		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000368615		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000574003	ENST00000392638		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000344079		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000356571		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000368614		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000368613		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000368612		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000368610		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000574003	ENST00000432555		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000574003	ENST00000475747		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	RPAIN	chr17	5324786	+	LRRC27	chr10	134174961	+
3UTR-3CDS	ENST00000348993	ENST00000558134		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCAND2P	chr15	85175529	+	SEC11A	chr15	85213300	-
3UTR-3UTR	ENST00000348993	ENST00000560266		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCAND2P	chr15	85175529	+	SEC11A	chr15	85213300	-
3UTR-3UTR	ENST00000348993	ENST00000268220		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCAND2P	chr15	85175529	+	SEC11A	chr15	85213300	-
3UTR-3UTR	ENST00000348993	ENST00000455959		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCAND2P	chr15	85175529	+	SEC11A	chr15	85213300	-
Frame-shit	ENST00000251900	ENST00000379651		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
Frame-shit	ENST00000251900	ENST00000379643		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
5CDS-intron	ENST00000251900	ENST00000543767		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
5CDS-intron	ENST00000251900	ENST00000443379		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
5CDS-5UTR	ENST00000251900	ENST00000452324		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
5CDS-intron	ENST00000251900	ENST00000466145		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-3CDS	ENST00000491988	ENST00000379651		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-3CDS	ENST00000491988	ENST00000379643		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-intron	ENST00000491988	ENST00000543767		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-intron	ENST00000491988	ENST00000443379		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-5UTR	ENST00000491988	ENST00000452324		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-intron	ENST00000491988	ENST00000466145		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-3CDS	ENST00000398048	ENST00000379651		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-3CDS	ENST00000398048	ENST00000379643		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-intron	ENST00000398048	ENST00000543767		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-intron	ENST00000398048	ENST00000443379		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-5UTR	ENST00000398048	ENST00000452324		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
intron-intron	ENST00000398048	ENST00000466145		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCML2	chrX	18323092	-	MAP7D2	chrX	20082923	-
Frame-shit	ENST00000371514	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000371514	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000371514	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000371514	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000528311	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000528311	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000528311	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000528311	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000371509	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000371509	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000371509	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000371509	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000407246	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000407246	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000407246	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000407246	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000371513	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
Frame-shit	ENST00000371513	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000371513	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
5CDS-intron	ENST00000371513	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000473584	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000473584	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000473584	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000473584	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000430330	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000430330	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000430330	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000430330	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000408941	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000408941	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000408941	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000408941	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000435345	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000435345	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000435345	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000435345	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000488965	ENST00000396153		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-3CDS	ENST00000488965	ENST00000371778		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000488965	ENST00000545823		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
intron-intron	ENST00000488965	ENST00000472808		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SCP2	chr1	53427301	+	FAF1	chr1	51171563	-
In-frame	ENST00000368851	ENST00000367591		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SLC16A10	chr6	111409298	+	PEX3	chr6	143792098	+
intron-3CDS	ENST00000368850	ENST00000367591		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SLC16A10	chr6	111409298	+	PEX3	chr6	143792098	+
intron-3CDS	ENST00000465319	ENST00000367591		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SLC16A10	chr6	111409298	+	PEX3	chr6	143792098	+
intron-3CDS	ENST00000560829	ENST00000300030		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000560829	ENST00000558779		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000560829	ENST00000380290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000560829	ENST00000557835		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000560829	ENST00000559950		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
Frame-shit	ENST00000353874	ENST00000300030		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000353874	ENST00000558779		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000353874	ENST00000380290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000353874	ENST00000557835		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000353874	ENST00000559950		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
Frame-shit	ENST00000261889	ENST00000300030		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000261889	ENST00000558779		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000261889	ENST00000380290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000261889	ENST00000557835		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000261889	ENST00000559950		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
Frame-shit	ENST00000559844	ENST00000300030		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000559844	ENST00000558779		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000559844	ENST00000380290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000559844	ENST00000557835		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000559844	ENST00000559950		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
Frame-shit	ENST00000561026	ENST00000300030		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000561026	ENST00000558779		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000561026	ENST00000380290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000561026	ENST00000557835		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000561026	ENST00000559950		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-3CDS	ENST00000559339	ENST00000300030		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000559339	ENST00000558779		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000559339	ENST00000380290		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000559339	ENST00000557835		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000559339	ENST00000559950		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	SNX1	chr15	64388371	+	FAM96A	chr15	64373350	-
Frame-shit	ENST00000225276	ENST00000445478		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ST6GALNAC2	chr17	74574838	-	JMJD6	chr17	74716580	-
Frame-shit	ENST00000225276	ENST00000397625		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ST6GALNAC2	chr17	74574838	-	JMJD6	chr17	74716580	-
5CDS-intron	ENST00000225276	ENST00000585429		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ST6GALNAC2	chr17	74574838	-	JMJD6	chr17	74716580	-
5UTR-3CDS	ENST00000586520	ENST00000445478		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ST6GALNAC2	chr17	74574838	-	JMJD6	chr17	74716580	-
5UTR-3CDS	ENST00000586520	ENST00000397625		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ST6GALNAC2	chr17	74574838	-	JMJD6	chr17	74716580	-
5UTR-intron	ENST00000586520	ENST00000585429		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	ST6GALNAC2	chr17	74574838	-	JMJD6	chr17	74716580	-
5CDS-intron	ENST00000372806	ENST00000546373		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372806	ENST00000551568		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372806	ENST00000338356		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372806	ENST00000549691		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000396731	ENST00000546373		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000396731	ENST00000551568		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000396731	ENST00000338356		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000396731	ENST00000549691		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372801	ENST00000546373		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372801	ENST00000551568		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372801	ENST00000338356		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000372801	ENST00000549691		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000499879	ENST00000546373		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000499879	ENST00000551568		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000499879	ENST00000338356		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000499879	ENST00000549691		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
intron-intron	ENST00000487587	ENST00000546373		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
intron-intron	ENST00000487587	ENST00000551568		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
intron-intron	ENST00000487587	ENST00000338356		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
intron-intron	ENST00000487587	ENST00000549691		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	STK4	chr20	43629994	+	CPM	chr12	69236109	-
In-frame	ENST00000355528	ENST00000397661		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000355528	ENST00000592199		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000355528	ENST00000587760		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000355528	ENST00000585575		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000355528	ENST00000360105		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000355528	ENST00000588228		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000355528	ENST00000587260		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000355528	ENST00000358552		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000355528	ENST00000588680		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000397466	ENST00000397661		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000397466	ENST00000592199		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000397466	ENST00000587760		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000397466	ENST00000585575		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000397466	ENST00000360105		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000397466	ENST00000588228		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000397466	ENST00000587260		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000397466	ENST00000358552		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
intron-intron	ENST00000397466	ENST00000588680		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000539345	ENST00000397661		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000539345	ENST00000592199		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000539345	ENST00000587760		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000539345	ENST00000585575		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
In-frame	ENST00000539345	ENST00000360105		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000539345	ENST00000588228		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000539345	ENST00000587260		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000539345	ENST00000358552		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000539345	ENST00000588680		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000576691	ENST00000397661		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000576691	ENST00000592199		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000576691	ENST00000587760		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000576691	ENST00000585575		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-3CDS	ENST00000576691	ENST00000360105		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-5UTR	ENST00000576691	ENST00000588228		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-5UTR	ENST00000576691	ENST00000587260		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-5UTR	ENST00000576691	ENST00000358552		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
3UTR-intron	ENST00000576691	ENST00000588680		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TBCD	chr17	80899359	+	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000359680	ENST00000253363		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000359680	ENST00000361162		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000359680	ENST00000528062		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000359680	ENST00000407261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000359680	ENST00000397370		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000359680	ENST00000463098		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000453655	ENST00000253363		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000453655	ENST00000361162		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000453655	ENST00000528062		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000453655	ENST00000407261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000453655	ENST00000397370		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000453655	ENST00000463098		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000380579	ENST00000253363		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000380579	ENST00000361162		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000380579	ENST00000528062		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000380579	ENST00000407261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000380579	ENST00000397370		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000380579	ENST00000463098		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000358231	ENST00000253363		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000358231	ENST00000361162		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000358231	ENST00000528062		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000358231	ENST00000407261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000358231	ENST00000397370		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000358231	ENST00000463098		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000458511	ENST00000253363		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000458511	ENST00000361162		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000458511	ENST00000528062		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000458511	ENST00000407261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000458511	ENST00000397370		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000458511	ENST00000463098		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000519885	ENST00000253363		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000519885	ENST00000361162		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000519885	ENST00000528062		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-3CDS	ENST00000519885	ENST00000407261		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000519885	ENST00000397370		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
5UTR-intron	ENST00000519885	ENST00000463098		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	TRAPPC2	chrX	13752644	-	RBM39	chr20	34309799	-
In-frame	ENST00000353364	ENST00000389757		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
In-frame	ENST00000353364	ENST00000389759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
5CDS-intron	ENST00000353364	ENST00000495123		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
In-frame	ENST00000280377	ENST00000389757		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
In-frame	ENST00000280377	ENST00000389759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
5CDS-intron	ENST00000280377	ENST00000495123		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
In-frame	ENST00000393654	ENST00000389757		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
In-frame	ENST00000393654	ENST00000389759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
5CDS-intron	ENST00000393654	ENST00000495123		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
intron-3CDS	ENST00000550632	ENST00000389757		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
intron-3CDS	ENST00000550632	ENST00000389759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
intron-intron	ENST00000550632	ENST00000495123		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
intron-3CDS	ENST00000312635	ENST00000389757		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
intron-3CDS	ENST00000312635	ENST00000389759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
intron-intron	ENST00000312635	ENST00000495123		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	USP15	chr12	62783768	+	PKP4	chr2	159497139	+
Frame-shit	ENST00000367545	ENST00000367858		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000524929		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000413996		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000237305		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000367857		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000528577		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000475719		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367545	ENST00000489458		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
Frame-shit	ENST00000367526	ENST00000367858		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000524929		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000413996		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000237305		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000367857		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000528577		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000475719		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
5CDS-intron	ENST00000367526	ENST00000489458		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-3CDS	ENST00000480333	ENST00000367858		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000524929		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000413996		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000237305		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000367857		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000528577		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000475719		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
intron-intron	ENST00000480333	ENST00000489458		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	UTRN	chr6	144999714	+	SGK1	chr6	134528569	-
Frame-shit	ENST00000535572	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000535572	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000535572	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
In-frame	ENST00000535572	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000537687	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000537687	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000537687	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
In-frame	ENST00000537687	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000315939	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000315939	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000315939	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
In-frame	ENST00000315939	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000447667	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000447667	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000447667	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000447667	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000530271	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000530271	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000530271	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
In-frame	ENST00000530271	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
3UTR-3CDS	ENST00000540360	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
3UTR-3CDS	ENST00000540360	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
3UTR-3CDS	ENST00000540360	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
3UTR-3CDS	ENST00000540360	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000340908	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000340908	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
Frame-shit	ENST00000340908	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
In-frame	ENST00000340908	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000574564	ENST00000422156		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000574564	ENST00000540759		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000574564	ENST00000550465		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000574564	ENST00000354947		TCGA	LD	BRCA	TCGA-AN-A0AM-01A	WNK1	chr12	966415	+	PIP4K2C	chr12	57995309	+
intron-3CDS	ENST00000263377	ENST00000263388		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
intron-3CDS	ENST00000371835	ENST00000263388		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
5UTR-3CDS	ENST00000360016	ENST00000263388		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
intron-3CDS	ENST00000602230	ENST00000263388		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
5CDS-intron	ENST00000369083	ENST00000535029		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-5UTR	ENST00000369083	ENST00000544016		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-intron	ENST00000369083	ENST00000361432		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-intron	ENST00000369083	ENST00000489988		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-intron	ENST00000361976	ENST00000535029		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-5UTR	ENST00000361976	ENST00000544016		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-intron	ENST00000361976	ENST00000361432		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-intron	ENST00000361976	ENST00000489988		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000369081	ENST00000535029		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-5UTR	ENST00000369081	ENST00000544016		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000369081	ENST00000361432		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000369081	ENST00000489988		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000369080	ENST00000535029		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-5UTR	ENST00000369080	ENST00000544016		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000369080	ENST00000361432		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000369080	ENST00000489988		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000490818	ENST00000535029		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-5UTR	ENST00000490818	ENST00000544016		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000490818	ENST00000361432		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
intron-intron	ENST00000490818	ENST00000489988		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	INPP5F	chr10	121510668	+	FAM45A	chr10	120867460	+
5CDS-intron	ENST00000362074	ENST00000487861		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000362074	ENST00000471583		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000362074	ENST00000487270		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-3UTR	ENST00000362074	ENST00000488612		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000362074	ENST00000390683		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000362074	ENST00000469165		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000344859	ENST00000487861		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000344859	ENST00000471583		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000344859	ENST00000487270		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-3UTR	ENST00000344859	ENST00000488612		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000344859	ENST00000390683		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000344859	ENST00000469165		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000369340	ENST00000487861		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000369340	ENST00000471583		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000369340	ENST00000487270		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-3UTR	ENST00000369340	ENST00000488612		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000369340	ENST00000390683		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5CDS-intron	ENST00000369340	ENST00000469165		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
intron-intron	ENST00000479995	ENST00000487861		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
intron-intron	ENST00000479995	ENST00000471583		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
intron-intron	ENST00000479995	ENST00000487270		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
intron-3UTR	ENST00000479995	ENST00000488612		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
intron-intron	ENST00000479995	ENST00000390683		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
intron-intron	ENST00000479995	ENST00000469165		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	NOTCH2NL	chr1	145248894	-	RAD51B	chr14	69196525	+
5UTR-5UTR	ENST00000428443	ENST00000466398		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
5UTR-5UTR	ENST00000428443	ENST00000410066		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
5UTR-5UTR	ENST00000428443	ENST00000336917		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
5UTR-5UTR	ENST00000428443	ENST00000409343		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
5UTR-5UTR	ENST00000428443	ENST00000409692		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000486468	ENST00000466398		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000486468	ENST00000410066		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000486468	ENST00000336917		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000486468	ENST00000409343		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000486468	ENST00000409692		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180409696	-
5CDS-intron	ENST00000255559	ENST00000585101		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
5CDS-intron	ENST00000255559	ENST00000474627		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
5CDS-intron	ENST00000255559	ENST00000469327		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
intron-intron	ENST00000542342	ENST00000585101		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
intron-intron	ENST00000542342	ENST00000474627		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
intron-intron	ENST00000542342	ENST00000469327		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
intron-intron	ENST00000579988	ENST00000585101		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
intron-intron	ENST00000579988	ENST00000474627		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
intron-intron	ENST00000579988	ENST00000469327		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
5CDS-intron	ENST00000579732	ENST00000585101		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
5CDS-intron	ENST00000579732	ENST00000474627		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
5CDS-intron	ENST00000579732	ENST00000469327		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	SLC39A11	chr17	70943891	-	ATPAF2	chr17	17881290	-
5CDS-intron	ENST00000342483	ENST00000373371		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000342483	ENST00000373352		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000342483	ENST00000373360		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000342483	ENST00000485806		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000543471	ENST00000373371		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000543471	ENST00000373352		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000543471	ENST00000373360		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
5CDS-intron	ENST00000543471	ENST00000485806		TCGA	LD	BRCA	TCGA-AN-A0AR-01A	ZNF79	chr9	130191196	+	SLC2A8	chr9	130165396	+
Frame-shit	ENST00000569600	ENST00000330687		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
Frame-shit	ENST00000569600	ENST00000394106		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
Frame-shit	ENST00000569600	ENST00000563952		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
Frame-shit	ENST00000219139	ENST00000330687		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
Frame-shit	ENST00000219139	ENST00000394106		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
Frame-shit	ENST00000219139	ENST00000563952		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
3UTR-3CDS	ENST00000569683	ENST00000330687		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
3UTR-3CDS	ENST00000569683	ENST00000394106		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
3UTR-3CDS	ENST00000569683	ENST00000563952		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	C16orf70	chr16	67144142	+	CMTM4	chr16	66670484	-
In-frame	ENST00000341516	ENST00000324472		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
5CDS-intron	ENST00000341516	ENST00000413230		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
intron-3CDS	ENST00000554215	ENST00000324472		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
intron-intron	ENST00000554215	ENST00000413230		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
intron-3CDS	ENST00000556847	ENST00000324472		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
intron-intron	ENST00000556847	ENST00000413230		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
In-frame	ENST00000557386	ENST00000324472		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
5CDS-intron	ENST00000557386	ENST00000413230		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
In-frame	ENST00000389997	ENST00000324472		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
5CDS-intron	ENST00000389997	ENST00000413230		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
intron-3CDS	ENST00000553293	ENST00000324472		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
intron-intron	ENST00000553293	ENST00000413230		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	DCAF5	chr14	69619482	-	DPY19L2	chr12	64055261	-
5CDS-5UTR	ENST00000255684	ENST00000372270		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000255684	ENST00000372267		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000255684	ENST00000372263		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000394618	ENST00000372270		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000394618	ENST00000372267		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000394618	ENST00000372263		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000340246	ENST00000372270		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000340246	ENST00000372267		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000340246	ENST00000372263		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000425950	ENST00000372270		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000425950	ENST00000372267		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000425950	ENST00000372263		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000415491	ENST00000372270		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000415491	ENST00000372267		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5CDS-5UTR	ENST00000415491	ENST00000372263		TCGA	LD	BRCA	TCGA-AN-A0AS-01A	LGALS12	chr11	63277973	+	PLAC9	chr10	81901838	+
5UTR-intron	ENST00000480212	ENST00000539907		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-intron	ENST00000480212	ENST00000540617		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000480212	ENST00000374840		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-intron	ENST00000480212	ENST00000468526		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000480212	ENST00000374832		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-intron	ENST00000480212	ENST00000425315		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-intron	ENST00000480212	ENST00000374830		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5UTR-intron	ENST00000480212	ENST00000374829		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000259053	ENST00000539907		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000259053	ENST00000540617		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000259053	ENST00000374840		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000259053	ENST00000468526		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000259053	ENST00000374832		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000259053	ENST00000425315		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000259053	ENST00000374830		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000259053	ENST00000374829		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000429078	ENST00000539907		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000429078	ENST00000540617		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000429078	ENST00000374840		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000429078	ENST00000468526		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-5UTR	ENST00000429078	ENST00000374832		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000429078	ENST00000425315		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000429078	ENST00000374830		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
5CDS-intron	ENST00000429078	ENST00000374829		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	CD302	chr2	160634449	-	ALPL	chr1	21880471	+
Frame-shit	ENST00000216122	ENST00000216117		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MCM5	chr22	35804556	+	HMOX1	chr22	35785857	+
Frame-shit	ENST00000382011	ENST00000216117		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MCM5	chr22	35804556	+	HMOX1	chr22	35785857	+
intron-3CDS	ENST00000465557	ENST00000216117		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MCM5	chr22	35804556	+	HMOX1	chr22	35785857	+
intron-3CDS	ENST00000319217	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000319217	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000319217	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000319217	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000319217	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000319217	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000319217	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000319217	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000319217	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541718	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541718	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541718	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541718	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541718	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541718	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000541718	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000541718	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000541718	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381022	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381022	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381022	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381022	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381022	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381022	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000381022	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000381022	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000381022	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541093	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541093	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541093	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541093	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541093	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000541093	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000541093	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000541093	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000541093	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000538841	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000538841	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000538841	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000538841	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000538841	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000538841	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000538841	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000538841	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000538841	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000536827	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000536827	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000536827	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000536827	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000536827	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000536827	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000536827	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000536827	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000536827	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000447879	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000447879	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000447879	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000447879	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000447879	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000447879	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000447879	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000447879	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000447879	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381015	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381015	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381015	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381015	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381015	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000381015	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000381015	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000381015	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000381015	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000546205	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000546205	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000546205	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000546205	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000546205	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000546205	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000546205	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000546205	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000546205	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000540202	ENST00000380934		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000540202	ENST00000380959		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000540202	ENST00000380953		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000540202	ENST00000397575		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000540202	ENST00000397581		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-3CDS	ENST00000540202	ENST00000397579		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000540202	ENST00000543693		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-5UTR	ENST00000540202	ENST00000380924		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
intron-intron	ENST00000540202	ENST00000380921		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	MPDZ	chr9	13279563	-	NFIB	chr9	14150264	-
Frame-shit	ENST00000608999	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
Frame-shit	ENST00000608999	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
Frame-shit	ENST00000608999	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
Frame-shit	ENST00000336894	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
Frame-shit	ENST00000336894	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
Frame-shit	ENST00000336894	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000480184	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000480184	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000480184	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000356764	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000356764	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000356764	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000290419	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000290419	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000290419	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000391959	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000391959	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000391959	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000367270	ENST00000358823		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000367270	ENST00000413307		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
intron-3CDS	ENST00000367270	ENST00000236925		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	PPP1R12B	chr1	202418299	+	CAMSAP2	chr1	200821669	+
Frame-shit	ENST00000296059	ENST00000465804		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
Frame-shit	ENST00000296059	ENST00000360632		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
Frame-shit	ENST00000296059	ENST00000467467		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000296059	ENST00000474080		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
Frame-shit	ENST00000470080	ENST00000465804		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
Frame-shit	ENST00000470080	ENST00000360632		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
Frame-shit	ENST00000470080	ENST00000467467		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000470080	ENST00000474080		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TM4SF18	chr3	149042667	-	WWTR1	chr3	149260324	-
Frame-shit	ENST00000298746	ENST00000369250		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TRUB1	chr10	116719566	+	FAM160B1	chr10	116659253	+
5CDS-intron	ENST00000298746	ENST00000369248		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TRUB1	chr10	116719566	+	FAM160B1	chr10	116659253	+
5CDS-intron	ENST00000298746	ENST00000369246		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TRUB1	chr10	116719566	+	FAM160B1	chr10	116659253	+
3UTR-3CDS	ENST00000485065	ENST00000369250		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TRUB1	chr10	116719566	+	FAM160B1	chr10	116659253	+
3UTR-intron	ENST00000485065	ENST00000369248		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TRUB1	chr10	116719566	+	FAM160B1	chr10	116659253	+
3UTR-intron	ENST00000485065	ENST00000369246		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	TRUB1	chr10	116719566	+	FAM160B1	chr10	116659253	+
3UTR-3UTR	ENST00000238831	ENST00000472729		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	YIPF4	chr2	32532259	+	COMMD1	chr2	62362966	+
3UTR-3UTR	ENST00000238831	ENST00000311832		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	YIPF4	chr2	32532259	+	COMMD1	chr2	62362966	+
3UTR-intron	ENST00000238831	ENST00000538736		TCGA	LD	BRCA	TCGA-AN-A0AT-01A	YIPF4	chr2	32532259	+	COMMD1	chr2	62362966	+
Frame-shit	ENST00000222247	ENST00000358691		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000222247	ENST00000580168		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
5CDS-intron	ENST00000222247	ENST00000580662		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000600147	ENST00000358691		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000600147	ENST00000580168		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
5CDS-intron	ENST00000600147	ENST00000580662		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000599898	ENST00000358691		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000599898	ENST00000580168		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
5CDS-intron	ENST00000599898	ENST00000580662		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000599870	ENST00000358691		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
Frame-shit	ENST00000599870	ENST00000580168		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
5CDS-intron	ENST00000599870	ENST00000580662		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	RPL18A	chr19	17973032	+	HELZ	chr17	65142006	-
3UTR-3CDS	ENST00000600490	ENST00000304718		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TMEM59L	chr19	18731383	+	GGNBP2	chr17	34937793	+
3UTR-intron	ENST00000600490	ENST00000485685		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TMEM59L	chr19	18731383	+	GGNBP2	chr17	34937793	+
3UTR-3CDS	ENST00000262817	ENST00000304718		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TMEM59L	chr19	18731383	+	GGNBP2	chr17	34937793	+
3UTR-intron	ENST00000262817	ENST00000485685		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TMEM59L	chr19	18731383	+	GGNBP2	chr17	34937793	+
intron-3CDS	ENST00000344824	ENST00000444766		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000344824	ENST00000251334		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000538887	ENST00000444766		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000538887	ENST00000251334		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000300933	ENST00000444766		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000300933	ENST00000251334		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000591645	ENST00000444766		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
intron-3CDS	ENST00000591645	ENST00000251334		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	TPM4	chr19	16187940	+	INTS2	chr17	59952399	-
5CDS-intron	ENST00000395957	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395957	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395957	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395957	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395957	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395957	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395957	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395958	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000457309	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395956	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000353245	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522542	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000521309	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000522819	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395953	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395948	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000395951	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
5CDS-intron	ENST00000419477	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000550629		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000465950		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000369367		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000549162		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000419565		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000395454		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
intron-intron	ENST00000492736	ENST00000395453		TCGA	LD	BRCA	TCGA-AN-A0FD-01A	YWHAZ	chr8	101960824	-	SCAF11	chr12	46345510	-
In-frame	ENST00000366844	ENST00000366956		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
5CDS-3UTR	ENST00000366844	ENST00000543945		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
5CDS-intron	ENST00000366844	ENST00000491277		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
In-frame	ENST00000366843	ENST00000366956		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
5CDS-3UTR	ENST00000366843	ENST00000543945		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
5CDS-intron	ENST00000366843	ENST00000491277		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
In-frame	ENST00000284563	ENST00000366956		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
5CDS-3UTR	ENST00000284563	ENST00000543945		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
5CDS-intron	ENST00000284563	ENST00000491277		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
intron-3CDS	ENST00000391874	ENST00000366956		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
intron-3UTR	ENST00000391874	ENST00000543945		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
intron-intron	ENST00000391874	ENST00000491277		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	ENAH	chr1	225700359	-	PTPN14	chr1	214551445	-
Frame-shit	ENST00000216373	ENST00000298310		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
Frame-shit	ENST00000216373	ENST00000382135		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
Frame-shit	ENST00000216373	ENST00000545773		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
5CDS-5UTR	ENST00000216373	ENST00000556925		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
5CDS-5UTR	ENST00000216373	ENST00000546046		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
5CDS-intron	ENST00000216373	ENST00000556672		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
Frame-shit	ENST00000543680	ENST00000298310		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
Frame-shit	ENST00000543680	ENST00000382135		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
Frame-shit	ENST00000543680	ENST00000545773		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
5CDS-5UTR	ENST00000543680	ENST00000556925		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
5CDS-5UTR	ENST00000543680	ENST00000546046		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
5CDS-intron	ENST00000543680	ENST00000556672		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
intron-3CDS	ENST00000555794	ENST00000298310		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
intron-3CDS	ENST00000555794	ENST00000382135		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
intron-3CDS	ENST00000555794	ENST00000545773		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
intron-5UTR	ENST00000555794	ENST00000556925		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
intron-5UTR	ENST00000555794	ENST00000546046		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
intron-intron	ENST00000555794	ENST00000556672		TCGA	LD	BRCA	TCGA-AN-A0FF-01A	SOS2	chr14	50697915	-	NEMF	chr14	50262662	-
In-frame	ENST00000295851	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000295851	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
In-frame	ENST00000261017	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261017	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
In-frame	ENST00000430418	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000430418	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
In-frame	ENST00000424558	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000424558	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
In-frame	ENST00000261016	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261016	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
In-frame	ENST00000422511	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000422511	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-3CDS	ENST00000430574	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
3UTR-intron	ENST00000430574	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
In-frame	ENST00000261018	ENST00000402905		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000444724		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000471271		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000545253		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000414439		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000428585		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000545262		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000456821		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000434998		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000320443		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000261018	ENST00000438828		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABI2	chr2	204267457	+	CARF	chr2	203846278	+
5CDS-intron	ENST00000302538	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000302538	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000302538	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-intron	ENST00000544583	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000544583	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000544583	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-intron	ENST00000572441	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-5UTR	ENST00000572441	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-5UTR	ENST00000572441	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-intron	ENST00000574437	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000574437	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000574437	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-intron	ENST00000291107	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000291107	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000291107	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-intron	ENST00000543210	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-5UTR	ENST00000543210	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-5UTR	ENST00000543210	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-intron	ENST00000536794	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000536794	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
5CDS-5UTR	ENST00000536794	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-intron	ENST00000573895	ENST00000538975		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-5UTR	ENST00000573895	ENST00000435359		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
intron-5UTR	ENST00000573895	ENST00000570628		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ABR	chr17	953290	-	CLUH	chr17	2607858	-
Frame-shit	ENST00000216267	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
In-frame	ENST00000216267	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5CDS-intron	ENST00000216267	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
In-frame	ENST00000404034	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
Frame-shit	ENST00000404034	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5CDS-intron	ENST00000404034	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
In-frame	ENST00000404760	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
Frame-shit	ENST00000404760	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5CDS-intron	ENST00000404760	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
Frame-shit	ENST00000457780	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
In-frame	ENST00000457780	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5CDS-intron	ENST00000457780	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
Frame-shit	ENST00000542442	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
In-frame	ENST00000542442	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5CDS-intron	ENST00000542442	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5UTR-3CDS	ENST00000342989	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5UTR-3CDS	ENST00000342989	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5UTR-intron	ENST00000342989	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5UTR-3CDS	ENST00000459821	ENST00000440475		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5UTR-3CDS	ENST00000459821	ENST00000266182		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
5UTR-intron	ENST00000459821	ENST00000477219		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	BRD1	chr22	50216599	-	TTLL8	chr22	50472891	-
In-frame	ENST00000346169	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000346169	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000414031	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000414031	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000392537	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000392537	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000382330	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000382330	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000350481	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000350481	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000352767	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000352767	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000427845	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000427845	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000342981	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000342981	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000319274	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000319274	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000424196	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000424196	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000411531	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000411531	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000441154	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000441154	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000434061	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
Frame-shit	ENST00000434061	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000435046	ENST00000429586		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
In-frame	ENST00000435046	ENST00000292808		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EIF4G1	chr3	184052622	+	ABCF3	chr3	183910890	+
5UTR-5UTR	ENST00000370113	ENST00000370105		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000370113	ENST00000370109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000370113	ENST00000427040		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000370113	ENST00000342173		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000370113	ENST00000488176		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000370114	ENST00000370105		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000370114	ENST00000370109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000370114	ENST00000427040		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000370114	ENST00000342173		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000370114	ENST00000488176		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000535414	ENST00000370105		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000535414	ENST00000370109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000535414	ENST00000427040		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000535414	ENST00000342173		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000535414	ENST00000488176		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000480774	ENST00000370105		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-5UTR	ENST00000480774	ENST00000370109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000480774	ENST00000427040		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000480774	ENST00000342173		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
5UTR-intron	ENST00000480774	ENST00000488176		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	EXTL2	chr1	101360189	-	DPH5	chr1	101487321	-
Frame-shit	ENST00000392562	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000392562	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000392562	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
5CDS-intron	ENST00000392562	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000316804	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000316804	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000316804	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
5CDS-intron	ENST00000316804	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000316615	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000316615	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000316615	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
5CDS-intron	ENST00000316615	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000392563	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000392563	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000392563	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
5CDS-intron	ENST00000392563	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000392564	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000392564	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000392564	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
5CDS-intron	ENST00000392564	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000578961	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000578961	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
In-frame	ENST00000578961	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
5CDS-intron	ENST00000578961	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
intron-3CDS	ENST00000462266	ENST00000293217		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
intron-3CDS	ENST00000462266	ENST00000537812		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
intron-3CDS	ENST00000462266	ENST00000301608		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
intron-intron	ENST00000462266	ENST00000591857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73949701	-
Frame-shit	ENST00000357325	ENST00000368218		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000357325	ENST00000368216		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000357325	ENST00000524343		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000357325	ENST00000476229		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000357325	ENST00000481920		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000537739	ENST00000368218		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
In-frame	ENST00000537739	ENST00000368216		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000537739	ENST00000524343		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000537739	ENST00000476229		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000537739	ENST00000481920		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000368209	ENST00000368218		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000368209	ENST00000368216		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000368209	ENST00000524343		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000368209	ENST00000476229		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000368209	ENST00000481920		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5UTR-3CDS	ENST00000465180	ENST00000368218		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5UTR-3CDS	ENST00000465180	ENST00000368216		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5UTR-intron	ENST00000465180	ENST00000524343		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5UTR-intron	ENST00000465180	ENST00000476229		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5UTR-intron	ENST00000465180	ENST00000481920		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000416666	ENST00000368218		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
In-frame	ENST00000416666	ENST00000368216		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000416666	ENST00000524343		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000416666	ENST00000476229		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000416666	ENST00000481920		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000368206	ENST00000368218		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000368206	ENST00000368216		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000368206	ENST00000524343		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000368206	ENST00000476229		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
5CDS-intron	ENST00000368206	ENST00000481920		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	HDGF	chr1	156714800	-	RRNAD1	chr1	156706424	+
Frame-shit	ENST00000371000	ENST00000329654		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000371000	ENST00000371049		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
In-frame	ENST00000371000	ENST00000423207		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000371000	ENST00000371048		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000371000	ENST00000371045		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000371000	ENST00000480109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000262345	ENST00000329654		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000262345	ENST00000371049		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
In-frame	ENST00000262345	ENST00000423207		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000262345	ENST00000371048		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000262345	ENST00000371045		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000262345	ENST00000480109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000541374	ENST00000329654		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000541374	ENST00000371049		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
In-frame	ENST00000541374	ENST00000423207		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000541374	ENST00000371048		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000541374	ENST00000371045		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000541374	ENST00000480109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000544434	ENST00000329654		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000544434	ENST00000371049		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
In-frame	ENST00000544434	ENST00000423207		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000544434	ENST00000371048		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000544434	ENST00000371045		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
5CDS-intron	ENST00000544434	ENST00000480109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
intron-3CDS	ENST00000465396	ENST00000329654		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
intron-3CDS	ENST00000465396	ENST00000371049		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
intron-3CDS	ENST00000465396	ENST00000423207		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
intron-intron	ENST00000465396	ENST00000371048		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
intron-intron	ENST00000465396	ENST00000371045		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
intron-intron	ENST00000465396	ENST00000480109		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	IL12RB2	chr1	67796493	+	PDE4B	chr1	66837996	+
Frame-shit	ENST00000579662	ENST00000539909		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000579662	ENST00000286621		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000579662	ENST00000372734		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000579662	ENST00000541550		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
5CDS-intron	ENST00000579662	ENST00000467840		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000339591	ENST00000539909		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000339591	ENST00000286621		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000339591	ENST00000372734		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000339591	ENST00000541550		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
5CDS-intron	ENST00000339591	ENST00000467840		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000200181	ENST00000539909		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000200181	ENST00000286621		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000200181	ENST00000372734		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000200181	ENST00000541550		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
5CDS-intron	ENST00000200181	ENST00000467840		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000450894	ENST00000539909		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000450894	ENST00000286621		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000450894	ENST00000372734		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000450894	ENST00000541550		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
5CDS-intron	ENST00000450894	ENST00000467840		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000449880	ENST00000539909		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000449880	ENST00000286621		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000449880	ENST00000372734		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
Frame-shit	ENST00000449880	ENST00000541550		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
5CDS-intron	ENST00000449880	ENST00000467840		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
intron-3CDS	ENST00000584558	ENST00000539909		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
intron-3CDS	ENST00000584558	ENST00000286621		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
intron-3CDS	ENST00000584558	ENST00000372734		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
intron-3CDS	ENST00000584558	ENST00000541550		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
intron-intron	ENST00000584558	ENST00000467840		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	ITGB4	chr17	73753188	+	ADK	chr10	76074425	+
5CDS-intron	ENST00000369787	ENST00000369836		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000369787	ENST00000336075		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000369787	ENST00000326729		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000369787	ENST00000495742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000369787	ENST00000369833		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000413138	ENST00000369836		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000413138	ENST00000336075		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000413138	ENST00000326729		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000413138	ENST00000495742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000413138	ENST00000369833		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000438661	ENST00000369836		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000438661	ENST00000336075		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000438661	ENST00000326729		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000438661	ENST00000495742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
5CDS-intron	ENST00000438661	ENST00000369833		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
intron-intron	ENST00000412512	ENST00000369836		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
intron-intron	ENST00000412512	ENST00000336075		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
intron-intron	ENST00000412512	ENST00000326729		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
intron-intron	ENST00000412512	ENST00000495742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
intron-intron	ENST00000412512	ENST00000369833		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	KCNC4	chr1	110768800	+	GSTM4	chr1	110207633	+
In-frame	ENST00000595618	ENST00000359866		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	MYO9B	chr19	17213367	+	DDA1	chr19	17424832	+
In-frame	ENST00000594824	ENST00000359866		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	MYO9B	chr19	17213367	+	DDA1	chr19	17424832	+
In-frame	ENST00000397274	ENST00000359866		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	MYO9B	chr19	17213367	+	DDA1	chr19	17424832	+
3UTR-3CDS	ENST00000593411	ENST00000359866		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	MYO9B	chr19	17213367	+	DDA1	chr19	17424832	+
5UTR-3CDS	ENST00000425241	ENST00000285046		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000425241	ENST00000543601		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
5UTR-intron	ENST00000425241	ENST00000476851		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000323373	ENST00000285046		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
5UTR-3CDS	ENST00000323373	ENST00000543601		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
5UTR-intron	ENST00000323373	ENST00000476851		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-3CDS	ENST00000393102	ENST00000285046		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-3CDS	ENST00000393102	ENST00000543601		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-intron	ENST00000393102	ENST00000476851		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-3CDS	ENST00000406272	ENST00000285046		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-3CDS	ENST00000406272	ENST00000543601		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-intron	ENST00000406272	ENST00000476851		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-3CDS	ENST00000478572	ENST00000285046		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-3CDS	ENST00000478572	ENST00000543601		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
intron-intron	ENST00000478572	ENST00000476851		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14905635	+
5CDS-intron	ENST00000354179	ENST00000398842		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000354179	ENST00000398809		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000354179	ENST00000461841		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000354179	ENST00000299366		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000354179	ENST00000224721		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000354179	ENST00000398788		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000354179	ENST00000475158		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000398842		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000398809		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000461841		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000299366		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000224721		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000398788		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000439151	ENST00000475158		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000398842		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000398809		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000461841		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000299366		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000224721		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000398788		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000347982	ENST00000475158		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000398842		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000398809		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000461841		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000299366		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000224721		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000398788		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000361032	ENST00000475158		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000398842		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000398809		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000461841		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000299366		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000224721		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000398788		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
5CDS-intron	ENST00000511258	ENST00000475158		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	NSD1	chr5	176563031	+	CDH23	chr10	73434869	+
In-frame	ENST00000337959	ENST00000258742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
In-frame	ENST00000337959	ENST00000410002		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000337959	ENST00000487595		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
In-frame	ENST00000263246	ENST00000258742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
In-frame	ENST00000263246	ENST00000410002		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000263246	ENST00000487595		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
Frame-shit	ENST00000407585	ENST00000258742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
Frame-shit	ENST00000407585	ENST00000410002		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000407585	ENST00000487595		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
In-frame	ENST00000403744	ENST00000258742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
In-frame	ENST00000403744	ENST00000410002		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000403744	ENST00000487595		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
Frame-shit	ENST00000402229	ENST00000258742		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
Frame-shit	ENST00000402229	ENST00000410002		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000402229	ENST00000487595		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	PACSIN2	chr22	43308027	-	NUPL2	chr7	23224689	+
Frame-shit	ENST00000262879	ENST00000361383		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000262879	ENST00000405275		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000262879	ENST00000373473		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-3UTR	ENST00000262879	ENST00000473857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-5UTR	ENST00000262879	ENST00000373469		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397042	ENST00000361383		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397042	ENST00000405275		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397042	ENST00000373473		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-3UTR	ENST00000397042	ENST00000473857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-5UTR	ENST00000397042	ENST00000373469		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397038	ENST00000361383		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397038	ENST00000405275		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397038	ENST00000373473		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-3UTR	ENST00000397038	ENST00000473857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-5UTR	ENST00000397038	ENST00000373469		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3CDS	ENST00000537204	ENST00000361383		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3CDS	ENST00000537204	ENST00000405275		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3CDS	ENST00000537204	ENST00000373473		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3UTR	ENST00000537204	ENST00000473857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-5UTR	ENST00000537204	ENST00000373469		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397040	ENST00000361383		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397040	ENST00000405275		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
Frame-shit	ENST00000397040	ENST00000373473		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-3UTR	ENST00000397040	ENST00000473857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
5CDS-5UTR	ENST00000397040	ENST00000373469		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3CDS	ENST00000490114	ENST00000361383		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3CDS	ENST00000490114	ENST00000405275		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3CDS	ENST00000490114	ENST00000373473		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-3UTR	ENST00000490114	ENST00000473857		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
intron-5UTR	ENST00000490114	ENST00000373469		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	RALGAPB	chr20	37150341	+	CTNNBL1	chr20	36405747	+
In-frame	ENST00000307142	ENST00000343526		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000307142	ENST00000415680		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
5CDS-3UTR	ENST00000307142	ENST00000497516		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000448416	ENST00000343526		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000448416	ENST00000415680		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
5CDS-3UTR	ENST00000448416	ENST00000497516		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000429713	ENST00000343526		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000429713	ENST00000415680		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
5CDS-3UTR	ENST00000429713	ENST00000497516		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000434046	ENST00000343526		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
In-frame	ENST00000434046	ENST00000415680		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
5CDS-3UTR	ENST00000434046	ENST00000497516		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	SYNPO2	chr4	119810296	+	TRIM24	chr7	138252226	+
Frame-shit	ENST00000399537	ENST00000425013		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000399537	ENST00000389902		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000399537	ENST00000469375		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000430969	ENST00000425013		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000430969	ENST00000389902		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000430969	ENST00000469375		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000399434	ENST00000469375		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5681007	-
5CDS-intron	ENST00000375217	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375217	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375217	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375226	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375226	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375226	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375267	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375267	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375267	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375254	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375254	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000375254	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375225	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375225	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375225	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000429347	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000429347	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000429347	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375224	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375224	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375224	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000543981	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000543981	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000543981	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000467272	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000467272	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000467272	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375218	ENST00000486901		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375218	ENST00000374695		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
intron-intron	ENST00000375218	ENST00000430507		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UBR4	chr1	19495929	-	HSPG2	chr1	22170792	-
5CDS-intron	ENST00000400427	ENST00000333781		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-3UTR	ENST00000400427	ENST00000541890		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400427	ENST00000398753		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400427	ENST00000380708		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400427	ENST00000466787		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400424	ENST00000333781		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-3UTR	ENST00000400424	ENST00000541890		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400424	ENST00000398753		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400424	ENST00000380708		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000400424	ENST00000466787		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408910	ENST00000333781		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-3UTR	ENST00000408910	ENST00000541890		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408910	ENST00000398753		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408910	ENST00000380708		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408910	ENST00000466787		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408989	ENST00000333781		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-3UTR	ENST00000408989	ENST00000541890		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408989	ENST00000398753		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408989	ENST00000380708		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
5CDS-intron	ENST00000408989	ENST00000466787		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
intron-intron	ENST00000400423	ENST00000333781		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
intron-3UTR	ENST00000400423	ENST00000541890		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
intron-intron	ENST00000400423	ENST00000398753		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
intron-intron	ENST00000400423	ENST00000380708		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
intron-intron	ENST00000400423	ENST00000466787		TCGA	LD	BRCA	TCGA-AN-A0FJ-01A	UMODL1	chr21	43529809	+	WRB	chr21	40780532	+
intron-3CDS	ENST00000355485	ENST00000295598		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000355485	ENST00000537345		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-5UTR	ENST00000355485	ENST00000369496		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-intron	ENST00000355485	ENST00000491156		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000369510	ENST00000295598		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000369510	ENST00000537345		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-5UTR	ENST00000369510	ENST00000369496		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-intron	ENST00000369510	ENST00000491156		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000310260	ENST00000295598		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000310260	ENST00000537345		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-5UTR	ENST00000310260	ENST00000369496		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-intron	ENST00000310260	ENST00000491156		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000369509	ENST00000295598		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000369509	ENST00000537345		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-5UTR	ENST00000369509	ENST00000369496		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-intron	ENST00000369509	ENST00000491156		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000474344	ENST00000295598		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-3CDS	ENST00000474344	ENST00000537345		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-5UTR	ENST00000474344	ENST00000369496		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
intron-intron	ENST00000474344	ENST00000491156		TCGA	LD	BRCA	TCGA-AN-A0FK-01A	VANGL1	chr1	116213768	+	ATP1A1	chr1	116926636	+
In-frame	ENST00000264982	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000264982	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000264982	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
In-frame	ENST00000542237	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000542237	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000542237	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
intron-3CDS	ENST00000489254	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
intron-5UTR	ENST00000489254	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
intron-5UTR	ENST00000489254	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
Frame-shit	ENST00000484888	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000484888	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000484888	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
In-frame	ENST00000481834	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000481834	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000481834	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5UTR-3CDS	ENST00000478673	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5UTR-5UTR	ENST00000478673	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5UTR-5UTR	ENST00000478673	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
Frame-shit	ENST00000464035	ENST00000333188		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000464035	ENST00000507777		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-5UTR	ENST00000464035	ENST00000510491		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	CEP70	chr3	138289160	-	COPB2	chr3	139102277	-
5CDS-intron	ENST00000367602	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	QSOX1	chr1	180165703	+	SMR3B	chr4	71255724	+
5CDS-3UTR	ENST00000367602	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	QSOX1	chr1	180165703	+	SMR3B	chr4	71255724	+
5CDS-intron	ENST00000367600	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	QSOX1	chr1	180165703	+	SMR3B	chr4	71255724	+
5CDS-3UTR	ENST00000367600	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	QSOX1	chr1	180165703	+	SMR3B	chr4	71255724	+
5CDS-intron	ENST00000338380	ENST00000372756		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
5CDS-intron	ENST00000338380	ENST00000372754		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
5CDS-5UTR	ENST00000338380	ENST00000342716		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
5CDS-5UTR	ENST00000338380	ENST00000353917		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
5CDS-5UTR	ENST00000338380	ENST00000360607		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
5CDS-5UTR	ENST00000338380	ENST00000537548		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
5CDS-5UTR	ENST00000338380	ENST00000372751		TCGA	LD	BRCA	TCGA-AN-A0FL-01A	SLPI	chr20	43883100	-	MATN4	chr20	43934256	-
Frame-shit	ENST00000395326	ENST00000299340		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000395326	ENST00000435845		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000395326	ENST00000400043		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000431089	ENST00000299340		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000431089	ENST00000435845		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000431089	ENST00000400043		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000398684	ENST00000299340		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000398684	ENST00000435845		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000398684	ENST00000400043		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000338592	ENST00000299340		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000338592	ENST00000435845		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000338592	ENST00000400043		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000415001	ENST00000299340		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000415001	ENST00000435845		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
Frame-shit	ENST00000415001	ENST00000400043		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000492264	ENST00000299340		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000492264	ENST00000435845		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000492264	ENST00000400043		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	CRCP	chr7	65599361	+	CYYR1	chr21	27938687	-
intron-3CDS	ENST00000263765	ENST00000258455		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	PRDM11	chr11	45169132	+	MRPS9	chr2	105687771	+
intron-3CDS	ENST00000530656	ENST00000258455		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	PRDM11	chr11	45169132	+	MRPS9	chr2	105687771	+
5UTR-3CDS	ENST00000424263	ENST00000258455		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	PRDM11	chr11	45169132	+	MRPS9	chr2	105687771	+
intron-3CDS	ENST00000528980	ENST00000258455		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	PRDM11	chr11	45169132	+	MRPS9	chr2	105687771	+
Frame-shit	ENST00000269033	ENST00000217407		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	SSH2	chr17	28022477	-	LBP	chr20	37002581	+
Frame-shit	ENST00000540801	ENST00000217407		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	SSH2	chr17	28022477	-	LBP	chr20	37002581	+
5UTR-3CDS	ENST00000324677	ENST00000217407		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	SSH2	chr17	28022477	-	LBP	chr20	37002581	+
intron-3CDS	ENST00000582084	ENST00000217407		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	SSH2	chr17	28022477	-	LBP	chr20	37002581	+
intron-3CDS	ENST00000590153	ENST00000217407		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	SSH2	chr17	28022477	-	LBP	chr20	37002581	+
intron-3CDS	ENST00000579954	ENST00000217407		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	SSH2	chr17	28022477	-	LBP	chr20	37002581	+
5CDS-3UTR	ENST00000264657	ENST00000357754		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	STAT3	chr17	40497577	-	C17orf102	chr17	32903593	-
5CDS-3UTR	ENST00000585517	ENST00000357754		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	STAT3	chr17	40497577	-	C17orf102	chr17	32903593	-
5CDS-3UTR	ENST00000389272	ENST00000357754		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	STAT3	chr17	40497577	-	C17orf102	chr17	32903593	-
5CDS-3UTR	ENST00000588969	ENST00000357754		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	STAT3	chr17	40497577	-	C17orf102	chr17	32903593	-
5CDS-3UTR	ENST00000404395	ENST00000357754		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	STAT3	chr17	40497577	-	C17orf102	chr17	32903593	-
intron-3UTR	ENST00000590776	ENST00000357754		TCGA	LD	BRCA	TCGA-AN-A0FT-01A	STAT3	chr17	40497577	-	C17orf102	chr17	32903593	-
intron-3CDS	ENST00000430627	ENST00000225388		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	CDK12	chr17	37712666	+	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000430627	ENST00000579665		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	CDK12	chr17	37712666	+	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000447079	ENST00000225388		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	CDK12	chr17	37712666	+	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000447079	ENST00000579665		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	CDK12	chr17	37712666	+	NUFIP2	chr17	27594548	-
3UTR-3CDS	ENST00000559545	ENST00000225388		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	CDK12	chr17	37712666	+	NUFIP2	chr17	27594548	-
3UTR-3CDS	ENST00000559545	ENST00000579665		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	CDK12	chr17	37712666	+	NUFIP2	chr17	27594548	-
In-frame	ENST00000583610	ENST00000360314		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000583610	ENST00000371336		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000583610	ENST00000434344		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000394294	ENST00000360314		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000394294	ENST00000371336		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000394294	ENST00000434344		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000264658	ENST00000360314		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000264658	ENST00000371336		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
In-frame	ENST00000264658	ENST00000434344		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
intron-3CDS	ENST00000577399	ENST00000360314		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
intron-3CDS	ENST00000577399	ENST00000371336		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
intron-3CDS	ENST00000577399	ENST00000434344		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	FBXL20	chr17	37557614	-	CASS4	chr20	55020956	+
Frame-shit	ENST00000252603	ENST00000361619		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	PGLS	chr19	17628659	+	GTPBP3	chr19	17452287	+
5CDS-3UTR	ENST00000252603	ENST00000598038		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	PGLS	chr19	17628659	+	GTPBP3	chr19	17452287	+
5CDS-3UTR	ENST00000252603	ENST00000324894		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	PGLS	chr19	17628659	+	GTPBP3	chr19	17452287	+
5CDS-3UTR	ENST00000252603	ENST00000358792		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	PGLS	chr19	17628659	+	GTPBP3	chr19	17452287	+
5CDS-3UTR	ENST00000252603	ENST00000600625		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	PGLS	chr19	17628659	+	GTPBP3	chr19	17452287	+
In-frame	ENST00000335195	ENST00000439616		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000443864		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000447398		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000449767		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000444676		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000222673		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000543843		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000335195	ENST00000459672		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
In-frame	ENST00000242248	ENST00000439616		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000443864		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000447398		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000449767		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000444676		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000222673		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000543843		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000242248	ENST00000459672		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
In-frame	ENST00000395831	ENST00000439616		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000443864		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000447398		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000449767		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000444676		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000222673		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000543843		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000395831	ENST00000459672		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-3CDS	ENST00000492971	ENST00000439616		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000443864		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000447398		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000449767		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000444676		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000222673		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000543843		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
intron-intron	ENST00000492971	ENST00000459672		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	POLM	chr7	44113224	-	OGDH	chr7	44739740	+
5CDS-intron	ENST00000340353	ENST00000532481		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000340353	ENST00000527134		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000340353	ENST00000304716		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000340353	ENST00000526415		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-3UTR	ENST00000340353	ENST00000531855		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000340353	ENST00000393427		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000340353	ENST00000525409		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000340353	ENST00000533193		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000340353	ENST00000525034		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-intron	ENST00000532959	ENST00000532481		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000532959	ENST00000527134		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000532959	ENST00000304716		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000532959	ENST00000526415		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-3UTR	ENST00000532959	ENST00000531855		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-intron	ENST00000532959	ENST00000393427		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000532959	ENST00000525409		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000532959	ENST00000533193		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-intron	ENST00000532959	ENST00000525034		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000305494	ENST00000532481		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000305494	ENST00000527134		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000305494	ENST00000304716		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000305494	ENST00000526415		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-3UTR	ENST00000305494	ENST00000531855		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000305494	ENST00000393427		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000305494	ENST00000525409		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000305494	ENST00000533193		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000305494	ENST00000525034		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-intron	ENST00000535167	ENST00000532481		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000535167	ENST00000527134		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000535167	ENST00000304716		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000535167	ENST00000526415		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-3UTR	ENST00000535167	ENST00000531855		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-intron	ENST00000535167	ENST00000393427		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000535167	ENST00000525409		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-5UTR	ENST00000535167	ENST00000533193		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
intron-intron	ENST00000535167	ENST00000525034		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000355734	ENST00000532481		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000355734	ENST00000527134		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000355734	ENST00000304716		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000355734	ENST00000526415		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-3UTR	ENST00000355734	ENST00000531855		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000355734	ENST00000393427		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000355734	ENST00000525409		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-5UTR	ENST00000355734	ENST00000533193		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
5CDS-intron	ENST00000355734	ENST00000525034		TCGA	LD	BRCA	TCGA-AN-A0FV-01A	TMEM135	chr11	86802437	+	AAMDC	chr11	77552065	+
In-frame	ENST00000435532	ENST00000422057		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
5CDS-intron	ENST00000435532	ENST00000317318		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
5CDS-intron	ENST00000435532	ENST00000423270		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
5CDS-intron	ENST00000435532	ENST00000559447		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-3CDS	ENST00000338963	ENST00000422057		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000338963	ENST00000317318		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000338963	ENST00000423270		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000338963	ENST00000559447		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-3CDS	ENST00000508342	ENST00000422057		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000508342	ENST00000317318		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000508342	ENST00000423270		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000508342	ENST00000559447		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-3CDS	ENST00000506154	ENST00000422057		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000506154	ENST00000317318		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000506154	ENST00000423270		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000506154	ENST00000559447		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-3CDS	ENST00000508075	ENST00000422057		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000508075	ENST00000317318		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000508075	ENST00000423270		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
intron-intron	ENST00000508075	ENST00000559447		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	NEDD4	chr15	56258671	-	RFX7	chr15	56379707	-
5CDS-5UTR	ENST00000370215	ENST00000445873		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	PDZD7	chr10	102789751	-	TLX1NB	chr10	102886855	-
5CDS-5UTR	ENST00000370215	ENST00000425505		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	PDZD7	chr10	102789751	-	TLX1NB	chr10	102886855	-
5CDS-5UTR	ENST00000470414	ENST00000445873		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	PDZD7	chr10	102789751	-	TLX1NB	chr10	102886855	-
5CDS-5UTR	ENST00000470414	ENST00000425505		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	PDZD7	chr10	102789751	-	TLX1NB	chr10	102886855	-
Frame-shit	ENST00000392723	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000392723	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000392723	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
Frame-shit	ENST00000361398	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000361398	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000361398	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
Frame-shit	ENST00000271715	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000271715	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000271715	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
Frame-shit	ENST00000368863	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000368863	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000368863	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
Frame-shit	ENST00000409503	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000409503	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000409503	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
Frame-shit	ENST00000531094	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000531094	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000531094	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
intron-3CDS	ENST00000540984	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
intron-intron	ENST00000540984	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
intron-intron	ENST00000540984	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
Frame-shit	ENST00000491586	ENST00000368814		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000491586	ENST00000477437		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
5CDS-intron	ENST00000491586	ENST00000489410		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	POGZ	chr1	151400299	-	THEM4	chr1	151867670	-
In-frame	ENST00000237536	ENST00000441008		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
In-frame	ENST00000237536	ENST00000217333		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
In-frame	ENST00000237536	ENST00000400441		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
5CDS-intron	ENST00000237536	ENST00000466091		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000279034	ENST00000441008		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000279034	ENST00000217333		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000279034	ENST00000400441		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-intron	ENST00000279034	ENST00000466091		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000456801	ENST00000441008		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000456801	ENST00000217333		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000456801	ENST00000400441		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-intron	ENST00000456801	ENST00000466091		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000357779	ENST00000441008		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000357779	ENST00000217333		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-3CDS	ENST00000357779	ENST00000400441		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
intron-intron	ENST00000357779	ENST00000466091		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SOGA1	chr20	35491061	-	MROH8	chr20	35738758	-
Frame-shit	ENST00000225504	ENST00000356126		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
Frame-shit	ENST00000225504	ENST00000357146		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
5CDS-intron	ENST00000225504	ENST00000581618		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
Frame-shit	ENST00000577396	ENST00000356126		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
Frame-shit	ENST00000577396	ENST00000357146		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
5CDS-intron	ENST00000577396	ENST00000581618		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
In-frame	ENST00000581540	ENST00000356126		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
In-frame	ENST00000581540	ENST00000357146		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
5CDS-intron	ENST00000581540	ENST00000581618		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
Frame-shit	ENST00000580947	ENST00000356126		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
Frame-shit	ENST00000580947	ENST00000357146		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
5CDS-intron	ENST00000580947	ENST00000581618		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	SUPT4H1	chr17	56428763	-	PSMD12	chr17	65341973	-
5CDS-intron	ENST00000585937	ENST00000558331		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585937	ENST00000251363		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585937	ENST00000559450		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585937	ENST00000559336		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585937	ENST00000595722		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000591899	ENST00000558331		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000591899	ENST00000251363		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000591899	ENST00000559450		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000591899	ENST00000559336		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000591899	ENST00000595722		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000589880	ENST00000558331		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000589880	ENST00000251363		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000589880	ENST00000559450		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000589880	ENST00000559336		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000589880	ENST00000595722		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5UTR-intron	ENST00000593029	ENST00000558331		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5UTR-intron	ENST00000593029	ENST00000251363		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5UTR-intron	ENST00000593029	ENST00000559450		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5UTR-intron	ENST00000593029	ENST00000559336		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5UTR-intron	ENST00000593029	ENST00000595722		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585671	ENST00000558331		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585671	ENST00000251363		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585671	ENST00000559450		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585671	ENST00000559336		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-intron	ENST00000585671	ENST00000595722		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	UQCR11	chr19	1605359	-	CERS4	chr19	8271638	+
5CDS-5UTR	ENST00000590071	ENST00000299505		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	WTIP	chr19	34984527	+	KIAA0355	chr19	34790584	+
5CDS-3UTR	ENST00000590071	ENST00000592124		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	WTIP	chr19	34984527	+	KIAA0355	chr19	34790584	+
5CDS-5UTR	ENST00000270288	ENST00000299505		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	WTIP	chr19	34984527	+	KIAA0355	chr19	34790584	+
5CDS-3UTR	ENST00000270288	ENST00000592124		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	WTIP	chr19	34984527	+	KIAA0355	chr19	34790584	+
Frame-shit	ENST00000325144	ENST00000367255		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
Frame-shit	ENST00000325144	ENST00000356820		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
Frame-shit	ENST00000325144	ENST00000423061		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
Frame-shit	ENST00000325144	ENST00000448038		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
Frame-shit	ENST00000325144	ENST00000341594		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
Frame-shit	ENST00000325144	ENST00000265368		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000367253		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000367248		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000413186		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000466159		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000539504		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000347037		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000354674		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-intron	ENST00000325144	ENST00000495090		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZBTB2	chr6	151694600	-	SYNE1	chr6	152570397	-
5CDS-5UTR	ENST00000523096	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000523096	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-5UTR	ENST00000220669	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000220669	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-5UTR	ENST00000522520	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000522520	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
intron-5UTR	ENST00000519338	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
intron-intron	ENST00000519338	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-5UTR	ENST00000521895	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000521895	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-5UTR	ENST00000521287	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000521287	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-5UTR	ENST00000517588	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000517588	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-5UTR	ENST00000519523	ENST00000220597		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5CDS-intron	ENST00000519523	ENST00000523463		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZFAND1	chr8	82626153	-	PAG1	chr8	81982405	-
5UTR-3CDS	ENST00000491959	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
5UTR-3CDS	ENST00000491959	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
5UTR-intron	ENST00000491959	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
5UTR-intron	ENST00000491959	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
5UTR-intron	ENST00000491959	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-3CDS	ENST00000478083	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-3CDS	ENST00000478083	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000478083	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000478083	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000478083	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-3CDS	ENST00000306176	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-3CDS	ENST00000306176	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000306176	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000306176	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000306176	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-3CDS	ENST00000466937	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-3CDS	ENST00000466937	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000466937	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000466937	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
intron-intron	ENST00000466937	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FW-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101535639	+
Frame-shit	ENST00000454817	ENST00000203407		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	COL7A1	chr3	48619756	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000454817	ENST00000493806		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	COL7A1	chr3	48619756	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000328333	ENST00000203407		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	COL7A1	chr3	48619756	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000328333	ENST00000493806		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	COL7A1	chr3	48619756	-	UQCRC1	chr3	48638900	-
intron-3CDS	ENST00000470076	ENST00000203407		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	COL7A1	chr3	48619756	-	UQCRC1	chr3	48638900	-
intron-intron	ENST00000470076	ENST00000493806		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	COL7A1	chr3	48619756	-	UQCRC1	chr3	48638900	-
In-frame	ENST00000443236	ENST00000382533		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
In-frame	ENST00000443236	ENST00000607003		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
5CDS-intron	ENST00000443236	ENST00000485646		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
5UTR-3CDS	ENST00000597335	ENST00000382533		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
5UTR-3CDS	ENST00000597335	ENST00000607003		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
5UTR-intron	ENST00000597335	ENST00000485646		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
intron-3CDS	ENST00000388925	ENST00000382533		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
intron-3CDS	ENST00000388925	ENST00000607003		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
intron-intron	ENST00000388925	ENST00000485646		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	CPAMD8	chr19	17006987	-	SAP18	chr13	21720944	+
In-frame	ENST00000301395	ENST00000574876		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000301395	ENST00000572293		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000301395	ENST00000269230		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000301395	ENST00000301396		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000301395	ENST00000436683		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
5CDS-intron	ENST00000301395	ENST00000570823		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000574154	ENST00000574876		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000574154	ENST00000572293		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000574154	ENST00000269230		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000574154	ENST00000301396		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000574154	ENST00000436683		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
5CDS-intron	ENST00000574154	ENST00000570823		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000381550	ENST00000574876		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000381550	ENST00000572293		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000381550	ENST00000269230		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000381550	ENST00000301396		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
In-frame	ENST00000381550	ENST00000436683		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
5CDS-intron	ENST00000381550	ENST00000570823		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
intron-3CDS	ENST00000573591	ENST00000574876		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
intron-3CDS	ENST00000573591	ENST00000572293		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
intron-3CDS	ENST00000573591	ENST00000269230		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
intron-3CDS	ENST00000573591	ENST00000301396		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
intron-3CDS	ENST00000573591	ENST00000436683		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
intron-intron	ENST00000573591	ENST00000570823		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	GGT6	chr17	4463677	-	PELP1	chr17	4580107	-
Frame-shit	ENST00000329875	ENST00000409678		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	PYCR1	chr17	79893213	-	NOTUM	chr17	79916871	-
Frame-shit	ENST00000337943	ENST00000409678		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	PYCR1	chr17	79893213	-	NOTUM	chr17	79916871	-
Frame-shit	ENST00000403172	ENST00000409678		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	PYCR1	chr17	79893213	-	NOTUM	chr17	79916871	-
Frame-shit	ENST00000577756	ENST00000409678		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	PYCR1	chr17	79893213	-	NOTUM	chr17	79916871	-
Frame-shit	ENST00000402252	ENST00000409678		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	PYCR1	chr17	79893213	-	NOTUM	chr17	79916871	-
5CDS-5UTR	ENST00000360566	ENST00000379933		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000360566	ENST00000379938		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000360566	ENST00000334984		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000360566	ENST00000349384		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000304567	ENST00000379933		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000304567	ENST00000379938		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000304567	ENST00000334984		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000304567	ENST00000349384		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	RRM2	chr2	10269281	+	RREB1	chr6	7176888	+
In-frame	ENST00000371142	ENST00000339364		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
5CDS-intron	ENST00000371142	ENST00000468783		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
5CDS-intron	ENST00000371142	ENST00000371110		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
5CDS-intron	ENST00000371142	ENST00000371109		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
intron-3CDS	ENST00000490192	ENST00000339364		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
intron-intron	ENST00000490192	ENST00000468783		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
intron-intron	ENST00000490192	ENST00000371110		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
intron-intron	ENST00000490192	ENST00000371109		TCGA	LD	BRCA	TCGA-AN-A0FX-01A	TM9SF3	chr10	98346491	-	PIK3AP1	chr10	98376468	-
In-frame	ENST00000242057	ENST00000380050		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
In-frame	ENST00000242057	ENST00000265741		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
In-frame	ENST00000242057	ENST00000406263		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
In-frame	ENST00000242057	ENST00000436577		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
5CDS-intron	ENST00000242057	ENST00000496279		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
intron-3CDS	ENST00000492120	ENST00000380050		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
intron-3CDS	ENST00000492120	ENST00000265741		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
intron-3CDS	ENST00000492120	ENST00000406263		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
intron-3CDS	ENST00000492120	ENST00000436577		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
intron-intron	ENST00000492120	ENST00000496279		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	AHR	chr7	17338953	+	CDK14	chr7	90741857	+
In-frame	ENST00000400324	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400324	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400324	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400324	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000400324	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400330	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400330	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400330	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400330	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000400330	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400319	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400319	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400319	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000400319	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000400319	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000400320	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000400320	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000400320	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000400320	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-intron	ENST00000400320	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000377908	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000377908	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000377908	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000377908	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000377908	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000267215	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000267215	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000267215	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
In-frame	ENST00000267215	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000267215	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000465066	ENST00000196169		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000465066	ENST00000377894		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000465066	ENST00000535286		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000465066	ENST00000377881		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-intron	ENST00000465066	ENST00000463109		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	DIAPH3	chr13	60667762	-	TDRD3	chr13	61141659	+
intron-3CDS	ENST00000249299	ENST00000408982		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000249299	ENST00000262477		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000249299	ENST00000537505		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000249299	ENST00000546142		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000249299	ENST00000341923		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-intron	ENST00000249299	ENST00000570487		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000424702	ENST00000408982		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000424702	ENST00000262477		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000424702	ENST00000537505		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000424702	ENST00000546142		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000424702	ENST00000341923		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-intron	ENST00000424702	ENST00000570487		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000422760	ENST00000408982		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000422760	ENST00000262477		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000422760	ENST00000537505		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000422760	ENST00000546142		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-3CDS	ENST00000422760	ENST00000341923		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
intron-intron	ENST00000422760	ENST00000570487		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	NAA38	chr17	7786554	-	RABEP1	chr17	5284683	+
5CDS-intron	ENST00000357552	ENST00000371440		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000357552	ENST00000371435		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000357552	ENST00000395961		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000357552	ENST00000434986		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000357552	ENST00000411563		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000371001	ENST00000371440		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000371001	ENST00000371435		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000371001	ENST00000395961		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000371001	ENST00000434986		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
5CDS-intron	ENST00000371001	ENST00000411563		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000476314	ENST00000371440		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000476314	ENST00000371435		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000476314	ENST00000395961		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000476314	ENST00000434986		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000476314	ENST00000411563		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	SYCP2	chr20	58440443	-	BCAS1	chr20	52574036	-
In-frame	ENST00000196169	ENST00000400324		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000196169	ENST00000400330		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000196169	ENST00000400319		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000196169	ENST00000400320		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000196169	ENST00000377908		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000196169	ENST00000267215		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000196169	ENST00000465066		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377894	ENST00000400324		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377894	ENST00000400330		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377894	ENST00000400319		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377894	ENST00000400320		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377894	ENST00000377908		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377894	ENST00000267215		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000377894	ENST00000465066		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000535286	ENST00000400324		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000535286	ENST00000400330		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000535286	ENST00000400319		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000535286	ENST00000400320		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000535286	ENST00000377908		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000535286	ENST00000267215		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000535286	ENST00000465066		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377881	ENST00000400324		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377881	ENST00000400330		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377881	ENST00000400319		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377881	ENST00000400320		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377881	ENST00000377908		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000377881	ENST00000267215		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000377881	ENST00000465066		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000463109	ENST00000400324		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000463109	ENST00000400330		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000463109	ENST00000400319		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000463109	ENST00000400320		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000463109	ENST00000377908		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000463109	ENST00000267215		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
intron-5UTR	ENST00000463109	ENST00000465066		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	TDRD3	chr13	61084889	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000356455	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000356455	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000356455	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000356455	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000356455	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
In-frame	ENST00000405520	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000405520	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000405520	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000405520	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000405520	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
In-frame	ENST00000335046	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000335046	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000335046	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000335046	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000335046	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-3CDS	ENST00000243893	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000243893	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000243893	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000243893	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000243893	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-3CDS	ENST00000352551	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000352551	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000352551	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000352551	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
intron-intron	ENST00000352551	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
In-frame	ENST00000372568	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000372568	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000372568	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000372568	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
5CDS-intron	ENST00000372568	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
3UTR-3CDS	ENST00000496085	ENST00000244047		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
3UTR-intron	ENST00000496085	ENST00000350849		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
3UTR-intron	ENST00000496085	ENST00000348616		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
3UTR-intron	ENST00000496085	ENST00000497614		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
3UTR-intron	ENST00000496085	ENST00000244049		TCGA	LD	BRCA	TCGA-AN-A0FY-01A	UBE2C	chr20	44443109	+	CDH26	chr20	58544022	+
3UTR-3CDS	ENST00000528190	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
3UTR-3UTR	ENST00000528190	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
3UTR-3UTR	ENST00000528190	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3CDS	ENST00000393389	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000393389	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000393389	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3CDS	ENST00000528722	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000528722	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000528722	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
In-frame	ENST00000260047	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000260047	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000260047	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3CDS	ENST00000526731	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000526731	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000526731	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
In-frame	ENST00000531895	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000531895	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000531895	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
3UTR-3CDS	ENST00000393392	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
3UTR-3UTR	ENST00000393392	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
3UTR-3UTR	ENST00000393392	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
In-frame	ENST00000533342	ENST00000308831		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000533342	ENST00000533360		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000533342	ENST00000532559		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ANKRD42	chr11	82959129	+	RHOD	chr11	66837896	+
In-frame	ENST00000286800	ENST00000355666		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
In-frame	ENST00000286800	ENST00000399017		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
In-frame	ENST00000286800	ENST00000354749		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
5CDS-3UTR	ENST00000286800	ENST00000479930		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
5CDS-5UTR	ENST00000286800	ENST00000540756		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
5CDS-intron	ENST00000286800	ENST00000399010		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
In-frame	ENST00000399921	ENST00000355666		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
In-frame	ENST00000399921	ENST00000399017		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
In-frame	ENST00000399921	ENST00000354749		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
5CDS-3UTR	ENST00000399921	ENST00000479930		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
5CDS-5UTR	ENST00000399921	ENST00000540756		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
5CDS-intron	ENST00000399921	ENST00000399010		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
intron-3CDS	ENST00000462262	ENST00000355666		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
intron-3CDS	ENST00000462262	ENST00000399017		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
intron-3CDS	ENST00000462262	ENST00000354749		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
intron-3UTR	ENST00000462262	ENST00000479930		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
intron-5UTR	ENST00000462262	ENST00000540756		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
intron-intron	ENST00000462262	ENST00000399010		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BACH1	chr21	30702014	+	TTC3	chr21	38494117	+
Frame-shit	ENST00000374518	ENST00000531066		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BMS1	chr10	43297666	+	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000374518	ENST00000355661		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BMS1	chr10	43297666	+	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000374518	ENST00000448080		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BMS1	chr10	43297666	+	PLEKHA7	chr11	16892729	-
5CDS-intron	ENST00000374518	ENST00000532079		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BMS1	chr10	43297666	+	PLEKHA7	chr11	16892729	-
5CDS-intron	ENST00000374518	ENST00000332954		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	BMS1	chr10	43297666	+	PLEKHA7	chr11	16892729	-
3UTR-3CDS	ENST00000435070	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000435070	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000435070	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000435070	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000435070	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000435070	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000456847	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000456847	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000456847	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000456847	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000456847	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000456847	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000266679	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000266679	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-3CDS	ENST00000266679	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000266679	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000266679	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-intron	ENST00000266679	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
intron-3CDS	ENST00000550987	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
intron-3CDS	ENST00000550987	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
intron-3CDS	ENST00000550987	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
intron-intron	ENST00000550987	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
intron-intron	ENST00000550987	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
intron-intron	ENST00000550987	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
In-frame	ENST00000551516	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
Frame-shit	ENST00000551516	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
In-frame	ENST00000551516	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
5CDS-intron	ENST00000551516	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
5CDS-intron	ENST00000551516	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
5CDS-intron	ENST00000551516	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	CPSF6	chr12	69656342	+	MDM1	chr12	68689146	-
3UTR-5UTR	ENST00000474320	ENST00000379649		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	DNAJC15	chr13	43597870	+	UFM1	chr13	38924136	+
3UTR-5UTR	ENST00000474320	ENST00000239878		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	DNAJC15	chr13	43597870	+	UFM1	chr13	38924136	+
3UTR-intron	ENST00000474320	ENST00000379641		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	DNAJC15	chr13	43597870	+	UFM1	chr13	38924136	+
5CDS-5UTR	ENST00000379221	ENST00000379649		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	DNAJC15	chr13	43597870	+	UFM1	chr13	38924136	+
5CDS-5UTR	ENST00000379221	ENST00000239878		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	DNAJC15	chr13	43597870	+	UFM1	chr13	38924136	+
5CDS-intron	ENST00000379221	ENST00000379641		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	DNAJC15	chr13	43597870	+	UFM1	chr13	38924136	+
5UTR-5UTR	ENST00000299293	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000299293	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000299293	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000299293	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000299293	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000299293	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000549921	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000549921	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000549921	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000549921	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000549921	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000549921	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000550389	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000550389	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000550389	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000550389	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000550389	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000550389	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000397997	ENST00000540418		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000397997	ENST00000303145		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000397997	ENST00000411698		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000397997	ENST00000393543		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000397997	ENST00000430606		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5UTR-5UTR	ENST00000397997	ENST00000545724		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	FRS2	chr12	69925836	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000370551	ENST00000370456		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	HS2ST1	chr1	87380843	+	GBP6	chr1	89834088	+
5CDS-intron	ENST00000370551	ENST00000535065		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	HS2ST1	chr1	87380843	+	GBP6	chr1	89834088	+
5CDS-5UTR	ENST00000370550	ENST00000370456		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	HS2ST1	chr1	87380843	+	GBP6	chr1	89834088	+
5CDS-intron	ENST00000370550	ENST00000535065		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	HS2ST1	chr1	87380843	+	GBP6	chr1	89834088	+
intron-5UTR	ENST00000356813	ENST00000370456		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	HS2ST1	chr1	87380843	+	GBP6	chr1	89834088	+
intron-intron	ENST00000356813	ENST00000535065		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	HS2ST1	chr1	87380843	+	GBP6	chr1	89834088	+
Frame-shit	ENST00000251588	ENST00000319715		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000251588	ENST00000452655		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000251588	ENST00000381039		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000251588	ENST00000348022		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000568545	ENST00000319715		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000568545	ENST00000452655		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000568545	ENST00000381039		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000568545	ENST00000348022		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000540986	ENST00000319715		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000540986	ENST00000452655		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000540986	ENST00000381039		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000540986	ENST00000348022		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000301694	ENST00000319715		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000301694	ENST00000452655		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000301694	ENST00000381039		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
Frame-shit	ENST00000301694	ENST00000348022		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000562862	ENST00000319715		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000562862	ENST00000452655		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000562862	ENST00000381039		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
intron-3CDS	ENST00000562862	ENST00000348022		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NARFL	chr16	790920	-	RBBP6	chr16	24557484	+
5UTR-3CDS	ENST00000318948	ENST00000265395		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NRIP1	chr21	16386665	-	HIBADH	chr7	27570967	-
intron-3CDS	ENST00000400199	ENST00000265395		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NRIP1	chr21	16386665	-	HIBADH	chr7	27570967	-
5UTR-3CDS	ENST00000400202	ENST00000265395		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	NRIP1	chr21	16386665	-	HIBADH	chr7	27570967	-
5CDS-3UTR	ENST00000393249	ENST00000371497		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000393249	ENST00000603338		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000393249	ENST00000329613		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000261183	ENST00000371497		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000261183	ENST00000603338		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000261183	ENST00000329613		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000393250	ENST00000371497		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000393250	ENST00000603338		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000393250	ENST00000329613		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000552178	ENST00000371497		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000552178	ENST00000603338		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
intron-intron	ENST00000552178	ENST00000329613		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	OSBPL8	chr12	76844631	-	TSHZ2	chr20	52103683	+
In-frame	ENST00000345317	ENST00000297029		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5CDS-intron	ENST00000345317	ENST00000519209		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5CDS-intron	ENST00000345317	ENST00000445618		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5CDS-intron	ENST00000345317	ENST00000473722		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5UTR-3CDS	ENST00000539623	ENST00000297029		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5UTR-intron	ENST00000539623	ENST00000519209		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5UTR-intron	ENST00000539623	ENST00000445618		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
5UTR-intron	ENST00000539623	ENST00000473722		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
intron-3CDS	ENST00000489977	ENST00000297029		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
intron-intron	ENST00000489977	ENST00000519209		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
intron-intron	ENST00000489977	ENST00000445618		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
intron-intron	ENST00000489977	ENST00000473722		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	SKAP2	chr7	26883649	-	SCIN	chr7	12617689	+
3UTR-3CDS	ENST00000299413	ENST00000396005		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	TRIM44	chr11	35827992	+	SLC5A12	chr11	26734253	-
3UTR-3CDS	ENST00000299413	ENST00000280467		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	TRIM44	chr11	35827992	+	SLC5A12	chr11	26734253	-
3UTR-3CDS	ENST00000532066	ENST00000396005		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	TRIM44	chr11	35827992	+	SLC5A12	chr11	26734253	-
3UTR-3CDS	ENST00000532066	ENST00000280467		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	TRIM44	chr11	35827992	+	SLC5A12	chr11	26734253	-
Frame-shit	ENST00000323037	ENST00000355485		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
Frame-shit	ENST00000323037	ENST00000369510		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
Frame-shit	ENST00000323037	ENST00000310260		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
Frame-shit	ENST00000323037	ENST00000369509		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
5CDS-3UTR	ENST00000323037	ENST00000474344		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000459998	ENST00000355485		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000459998	ENST00000369510		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000459998	ENST00000310260		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
intron-3CDS	ENST00000459998	ENST00000369509		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
intron-3UTR	ENST00000459998	ENST00000474344		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZNRF2	chr7	30363353	+	VANGL1	chr1	116224985	+
5UTR-5UTR	ENST00000491959	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
5UTR-5UTR	ENST00000491959	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
5UTR-3UTR	ENST00000491959	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
5UTR-5UTR	ENST00000491959	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
5UTR-intron	ENST00000491959	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000478083	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000478083	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-3UTR	ENST00000478083	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000478083	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-intron	ENST00000478083	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000306176	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000306176	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-3UTR	ENST00000306176	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000306176	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-intron	ENST00000306176	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000466937	ENST00000273347		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000466937	ENST00000491511		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-3UTR	ENST00000466937	ENST00000487830		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-5UTR	ENST00000466937	ENST00000477909		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
intron-intron	ENST00000466937	ENST00000422132		TCGA	LD	BRCA	TCGA-AN-A0FZ-01A	ZPLD1	chr3	101948185	+	NXPE3	chr3	101500954	+
5CDS-3UTR	ENST00000542672	ENST00000468573		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
5CDS-5UTR	ENST00000542672	ENST00000255380		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
5CDS-3UTR	ENST00000366578	ENST00000468573		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
5CDS-5UTR	ENST00000366578	ENST00000255380		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
3UTR-3UTR	ENST00000492634	ENST00000468573		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
3UTR-5UTR	ENST00000492634	ENST00000255380		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
intron-3UTR	ENST00000546208	ENST00000468573		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
intron-5UTR	ENST00000546208	ENST00000255380		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	ACTN2	chr1	236850099	+	CHRM3	chr1	239795524	+
3UTR-3UTR	ENST00000411948	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	COX20	chr1	245008030	+	SMR3B	chr4	71255573	+
3UTR-3UTR	ENST00000411948	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	COX20	chr1	245008030	+	SMR3B	chr4	71255573	+
intron-3UTR	ENST00000366528	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	COX20	chr1	245008030	+	SMR3B	chr4	71255573	+
intron-3UTR	ENST00000366528	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	COX20	chr1	245008030	+	SMR3B	chr4	71255573	+
3UTR-3UTR	ENST00000498262	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	COX20	chr1	245008030	+	SMR3B	chr4	71255573	+
3UTR-3UTR	ENST00000498262	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	COX20	chr1	245008030	+	SMR3B	chr4	71255573	+
5CDS-intron	ENST00000435070	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
5CDS-3UTR	ENST00000435070	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
5CDS-intron	ENST00000456847	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
5CDS-3UTR	ENST00000456847	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
5CDS-intron	ENST00000266679	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
5CDS-3UTR	ENST00000266679	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
intron-intron	ENST00000550987	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
intron-3UTR	ENST00000550987	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
intron-intron	ENST00000551516	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
intron-3UTR	ENST00000551516	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	CPSF6	chr12	69652693	+	SMR3B	chr4	71255684	+
intron-3CDS	ENST00000222219	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	DNASE2	chr19	12989318	-	SMR3B	chr4	71255563	+
intron-3CDS	ENST00000222219	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	DNASE2	chr19	12989318	-	SMR3B	chr4	71255563	+
intron-3CDS	ENST00000538460	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	DNASE2	chr19	12989318	-	SMR3B	chr4	71255563	+
intron-3CDS	ENST00000538460	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	DNASE2	chr19	12989318	-	SMR3B	chr4	71255563	+
5CDS-intron	ENST00000332050	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-3UTR	ENST00000332050	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-intron	ENST00000397938	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-3UTR	ENST00000397938	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-intron	ENST00000406548	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-3UTR	ENST00000406548	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-intron	ENST00000331029	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-3UTR	ENST00000331029	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-intron	ENST00000414183	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-3UTR	ENST00000414183	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
intron-intron	ENST00000333395	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
intron-3UTR	ENST00000333395	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-intron	ENST00000332035	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-3UTR	ENST00000332035	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	EWSR1	chr22	29695825	+	SMR3B	chr4	71255624	+
5CDS-intron	ENST00000529681	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	MUC5B	chr11	1282698	+	SMR3B	chr4	71255709	+
5CDS-3UTR	ENST00000529681	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	MUC5B	chr11	1282698	+	SMR3B	chr4	71255709	+
5CDS-intron	ENST00000447027	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	MUC5B	chr11	1282698	+	SMR3B	chr4	71255709	+
5CDS-3UTR	ENST00000447027	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	MUC5B	chr11	1282698	+	SMR3B	chr4	71255709	+
intron-intron	ENST00000531082	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	MUC5B	chr11	1282698	+	SMR3B	chr4	71255709	+
intron-3UTR	ENST00000531082	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	MUC5B	chr11	1282698	+	SMR3B	chr4	71255709	+
5CDS-5UTR	ENST00000281038	ENST00000356341		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000281038	ENST00000530617		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000281038	ENST00000278568		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000281038	ENST00000528203		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000281038	ENST00000525542		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000528850	ENST00000356341		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000528850	ENST00000530617		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000528850	ENST00000278568		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000528850	ENST00000528203		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000528850	ENST00000525542		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NARS2	chr11	78189631	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000397661	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000397661	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000397661	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000397661	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000397661	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000592199	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000592199	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000592199	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000592199	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000592199	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587760	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587760	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587760	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587760	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000587760	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000585575	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000585575	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000585575	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000585575	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000585575	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000360105	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000360105	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000360105	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000360105	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-3UTR	ENST00000360105	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000588228	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000588228	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000588228	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000588228	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000588228	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587260	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587260	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587260	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000587260	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000587260	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000358552	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000358552	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000358552	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000358552	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-3UTR	ENST00000358552	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000588680	ENST00000541222		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000588680	ENST00000316856		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000588680	ENST00000586534		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-5UTR	ENST00000588680	ENST00000592268		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
intron-3UTR	ENST00000588680	ENST00000588826		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	NFIX	chr19	13189549	+	RAD23A	chr19	13058662	+
5CDS-intron	ENST00000322644	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	POLR2A	chr17	7417234	+	SMR3B	chr4	71255724	+
5CDS-3UTR	ENST00000322644	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	POLR2A	chr17	7417234	+	SMR3B	chr4	71255724	+
intron-intron	ENST00000572844	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	POLR2A	chr17	7417234	+	SMR3B	chr4	71255724	+
intron-3UTR	ENST00000572844	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	POLR2A	chr17	7417234	+	SMR3B	chr4	71255724	+
intron-3UTR	ENST00000464451	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
intron-3UTR	ENST00000464451	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
3UTR-3UTR	ENST00000243253	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
3UTR-3UTR	ENST00000243253	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
3UTR-3UTR	ENST00000424880	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
3UTR-3UTR	ENST00000424880	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
3UTR-3UTR	ENST00000483956	ENST00000504825		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
3UTR-3UTR	ENST00000483956	ENST00000304915		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SEC61A1	chr3	127790079	+	SMR3B	chr4	71255575	+
Frame-shit	ENST00000236137	ENST00000367796		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SLC19A2	chr1	169437349	-	F5	chr1	169497332	-
Frame-shit	ENST00000236137	ENST00000367797		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SLC19A2	chr1	169437349	-	F5	chr1	169497332	-
5CDS-intron	ENST00000236137	ENST00000546081		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SLC19A2	chr1	169437349	-	F5	chr1	169497332	-
Frame-shit	ENST00000367804	ENST00000367796		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SLC19A2	chr1	169437349	-	F5	chr1	169497332	-
Frame-shit	ENST00000367804	ENST00000367797		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SLC19A2	chr1	169437349	-	F5	chr1	169497332	-
5CDS-intron	ENST00000367804	ENST00000546081		TCGA	LD	BRCA	TCGA-AN-A0G0-01A	SLC19A2	chr1	169437349	-	F5	chr1	169497332	-
5UTR-3CDS	ENST00000291572	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
5UTR-intron	ENST00000291572	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
5UTR-3CDS	ENST00000398061	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
5UTR-intron	ENST00000398061	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
5UTR-3CDS	ENST00000327505	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
5UTR-intron	ENST00000327505	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-3CDS	ENST00000398063	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-intron	ENST00000398063	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-3CDS	ENST00000398058	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-intron	ENST00000398058	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-3CDS	ENST00000546158	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-intron	ENST00000546158	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-3CDS	ENST00000479117	ENST00000454872		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
intron-intron	ENST00000479117	ENST00000473253		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	AGPAT3	chr21	45323900	+	NAALADL2	chr3	175520793	+
In-frame	ENST00000398842	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398842	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398842	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398842	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398842	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398842	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398842	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000398842	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000398842	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000398809	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000398809	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000398809	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000461841	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000461841	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000461841	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000299366	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000299366	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000299366	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
In-frame	ENST00000224721	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000224721	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5CDS-intron	ENST00000224721	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000398788	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-intron	ENST00000398788	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-intron	ENST00000398788	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000404816		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000354476		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000390003		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000418533		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000402934		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000404525		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-3CDS	ENST00000475158	ENST00000407925		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-intron	ENST00000475158	ENST00000272273		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
intron-intron	ENST00000475158	ENST00000498013		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	CDH23	chr10	73206152	+	LTBP1	chr2	33468729	+
5UTR-3CDS	ENST00000361999	ENST00000355044		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000361999	ENST00000423111		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000361999	ENST00000303745		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000361999	ENST00000529665		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000361999	ENST00000527407		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000355123	ENST00000355044		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000355123	ENST00000423111		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000355123	ENST00000303745		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000355123	ENST00000529665		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000355123	ENST00000527407		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000406921	ENST00000355044		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000406921	ENST00000423111		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000406921	ENST00000303745		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000406921	ENST00000529665		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000406921	ENST00000527407		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000407704	ENST00000355044		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000407704	ENST00000423111		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000407704	ENST00000303745		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000407704	ENST00000529665		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000407704	ENST00000527407		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	ITSN2	chr2	24583173	-	ATRNL1	chr10	117278773	+
Frame-shit	ENST00000307720	ENST00000274063		TCGA	LD	BRCA	TCGA-AN-A0XN-01A	PPID	chr4	159640332	-	SFRP2	chr4	154702907	-
Frame-shit	ENST00000311191	ENST00000287380		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000311191	ENST00000309336		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000311191	ENST00000327098		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000311191	ENST00000522420		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000311191	ENST00000521676		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
5CDS-3UTR	ENST00000311191	ENST00000378080		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
5CDS-3UTR	ENST00000311191	ENST00000518805		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389798	ENST00000287380		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389798	ENST00000309336		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389798	ENST00000327098		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389798	ENST00000522420		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389798	ENST00000521676		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
5CDS-3UTR	ENST00000389798	ENST00000378080		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
5CDS-3UTR	ENST00000389798	ENST00000518805		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389797	ENST00000287380		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389797	ENST00000309336		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389797	ENST00000327098		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389797	ENST00000522420		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
Frame-shit	ENST00000389797	ENST00000521676		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
5CDS-3UTR	ENST00000389797	ENST00000378080		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
5CDS-3UTR	ENST00000389797	ENST00000518805		TCGA	LD	BRCA	TCGA-AN-A0XO-01A	LRCH1	chr13	47127838	+	TBC1D31	chr8	124156957	+
In-frame	ENST00000469224	ENST00000282728		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000469224	ENST00000472590		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000469224	ENST00000492654		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
In-frame	ENST00000394965	ENST00000282728		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000394965	ENST00000472590		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000394965	ENST00000492654		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
In-frame	ENST00000310271	ENST00000282728		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000310271	ENST00000472590		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000310271	ENST00000492654		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
In-frame	ENST00000484952	ENST00000282728		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000484952	ENST00000472590		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
5CDS-intron	ENST00000484952	ENST00000492654		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	ALAS1	chr3	52242227	+	HHEX	chr10	94449946	+
intron-3CDS	ENST00000210060	ENST00000397668		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000210060	ENST00000264827		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-intron	ENST00000210060	ENST00000589965		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000351660	ENST00000397668		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000351660	ENST00000264827		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-intron	ENST00000351660	ENST00000589965		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000594424	ENST00000397668		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000594424	ENST00000264827		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-intron	ENST00000594424	ENST00000589965		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000599481	ENST00000397668		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-3CDS	ENST00000599481	ENST00000264827		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
intron-intron	ENST00000599481	ENST00000589965		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	DHPS	chr19	12792332	-	HOOK2	chr19	12878238	-
Frame-shit	ENST00000359315	ENST00000308677		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	TPGS1	chr19	507844	+	PRKACA	chr19	14204049	-
5CDS-5UTR	ENST00000359315	ENST00000350356		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	TPGS1	chr19	507844	+	PRKACA	chr19	14204049	-
5CDS-intron	ENST00000359315	ENST00000590853		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	TPGS1	chr19	507844	+	PRKACA	chr19	14204049	-
5CDS-intron	ENST00000359315	ENST00000589994		TCGA	LD	BRCA	TCGA-AN-A0XT-01A	TPGS1	chr19	507844	+	PRKACA	chr19	14204049	-
In-frame	ENST00000298992	ENST00000553514		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
Frame-shit	ENST00000298992	ENST00000329559		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
In-frame	ENST00000298992	ENST00000605997		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
Frame-shit	ENST00000298992	ENST00000555441		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
5CDS-intron	ENST00000298992	ENST00000556555		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
In-frame	ENST00000435224	ENST00000553514		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
Frame-shit	ENST00000435224	ENST00000329559		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
In-frame	ENST00000435224	ENST00000605997		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
Frame-shit	ENST00000435224	ENST00000555441		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
5CDS-intron	ENST00000435224	ENST00000556555		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
intron-3CDS	ENST00000530814	ENST00000553514		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
intron-3CDS	ENST00000530814	ENST00000329559		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
intron-3CDS	ENST00000530814	ENST00000605997		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
intron-3CDS	ENST00000530814	ENST00000555441		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
intron-intron	ENST00000530814	ENST00000556555		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ABTB2	chr11	34378248	-	NDUFB1	chr14	92582573	-
5CDS-5UTR	ENST00000371073	ENST00000367510		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	CACHD1	chr1	65147789	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000371073	ENST00000367509		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	CACHD1	chr1	65147789	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000290039	ENST00000367510		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	CACHD1	chr1	65147789	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000290039	ENST00000367509		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	CACHD1	chr1	65147789	+	RNF2	chr1	185056684	+
3UTR-5UTR	ENST00000495994	ENST00000367510		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	CACHD1	chr1	65147789	+	RNF2	chr1	185056684	+
3UTR-5UTR	ENST00000495994	ENST00000367509		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	CACHD1	chr1	65147789	+	RNF2	chr1	185056684	+
5CDS-3UTR	ENST00000283249	ENST00000472729		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000283249	ENST00000311832		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000283249	ENST00000538736		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5UTR-3UTR	ENST00000485635	ENST00000472729		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5UTR-3UTR	ENST00000485635	ENST00000311832		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5UTR-intron	ENST00000485635	ENST00000538736		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000428609	ENST00000472729		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000428609	ENST00000311832		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000428609	ENST00000538736		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000409967	ENST00000472729		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000409967	ENST00000311832		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000409967	ENST00000538736		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000409872	ENST00000472729		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000409872	ENST00000311832		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000409872	ENST00000538736		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ITGB6	chr2	161025723	-	COMMD1	chr2	62362966	+
Frame-shit	ENST00000234296	ENST00000286190		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
Frame-shit	ENST00000234296	ENST00000405148		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
Frame-shit	ENST00000234296	ENST00000392257		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
Frame-shit	ENST00000234296	ENST00000439709		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
5CDS-5UTR	ENST00000234296	ENST00000448967		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
intron-3CDS	ENST00000467605	ENST00000286190		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
intron-3CDS	ENST00000467605	ENST00000405148		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
intron-3CDS	ENST00000467605	ENST00000392257		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
intron-3CDS	ENST00000467605	ENST00000439709		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
intron-5UTR	ENST00000467605	ENST00000448967		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	ORC2	chr2	201790559	-	ALS2CR12	chr2	202173973	-
In-frame	ENST00000372592	ENST00000372600		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000372592	ENST00000372599		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
Frame-shit	ENST00000372592	ENST00000259324		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
5CDS-3UTR	ENST00000372592	ENST00000492784		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000308941	ENST00000372600		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000308941	ENST00000372599		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
Frame-shit	ENST00000308941	ENST00000259324		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
5CDS-3UTR	ENST00000308941	ENST00000492784		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000353176	ENST00000372600		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000353176	ENST00000372599		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
Frame-shit	ENST00000353176	ENST00000259324		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
5CDS-3UTR	ENST00000353176	ENST00000492784		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000421063	ENST00000372600		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
In-frame	ENST00000421063	ENST00000372599		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
Frame-shit	ENST00000421063	ENST00000259324		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
5CDS-3UTR	ENST00000421063	ENST00000492784		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
intron-3CDS	ENST00000487504	ENST00000372600		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
intron-3CDS	ENST00000487504	ENST00000372599		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
intron-3CDS	ENST00000487504	ENST00000259324		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
intron-3UTR	ENST00000487504	ENST00000492784		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PHYHD1	chr9	131689475	+	LRRC8A	chr9	131678375	+
5CDS-5UTR	ENST00000287878	ENST00000570565		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000287878	ENST00000442502		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000287878	ENST00000340813		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000287878	ENST00000451037		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000287878	ENST00000285273		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-intron	ENST00000287878	ENST00000571918		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000418337	ENST00000570565		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000418337	ENST00000442502		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000418337	ENST00000340813		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000418337	ENST00000451037		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000418337	ENST00000285273		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-intron	ENST00000418337	ENST00000571918		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000433631	ENST00000570565		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000433631	ENST00000442502		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000433631	ENST00000340813		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000433631	ENST00000451037		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000433631	ENST00000285273		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-intron	ENST00000433631	ENST00000571918		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000492843	ENST00000570565		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000492843	ENST00000442502		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000492843	ENST00000340813		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000492843	ENST00000451037		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000492843	ENST00000285273		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-intron	ENST00000492843	ENST00000571918		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000392801	ENST00000570565		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000392801	ENST00000442502		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000392801	ENST00000340813		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000392801	ENST00000451037		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000392801	ENST00000285273		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5CDS-intron	ENST00000392801	ENST00000571918		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
intron-5UTR	ENST00000461529	ENST00000570565		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
intron-5UTR	ENST00000461529	ENST00000442502		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
intron-5UTR	ENST00000461529	ENST00000340813		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
intron-5UTR	ENST00000461529	ENST00000451037		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
intron-5UTR	ENST00000461529	ENST00000285273		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
intron-intron	ENST00000461529	ENST00000571918		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	PRKAG2	chr7	151329155	-	CA10	chr17	50149753	-
5UTR-3CDS	ENST00000367510	ENST00000371073		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	RNF2	chr1	185014781	+	CACHD1	chr1	65137247	+
5UTR-3CDS	ENST00000367510	ENST00000290039		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	RNF2	chr1	185014781	+	CACHD1	chr1	65137247	+
5UTR-3UTR	ENST00000367510	ENST00000495994		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	RNF2	chr1	185014781	+	CACHD1	chr1	65137247	+
5UTR-3CDS	ENST00000367509	ENST00000371073		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	RNF2	chr1	185014781	+	CACHD1	chr1	65137247	+
5UTR-3CDS	ENST00000367509	ENST00000290039		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	RNF2	chr1	185014781	+	CACHD1	chr1	65137247	+
5UTR-3UTR	ENST00000367509	ENST00000495994		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	RNF2	chr1	185014781	+	CACHD1	chr1	65137247	+
Frame-shit	ENST00000571730	ENST00000329138		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	SLC25A10	chr17	79683080	+	HGS	chr17	79667497	+
Frame-shit	ENST00000541223	ENST00000329138		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	SLC25A10	chr17	79683080	+	HGS	chr17	79667497	+
Frame-shit	ENST00000331531	ENST00000329138		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	SLC25A10	chr17	79683080	+	HGS	chr17	79667497	+
Frame-shit	ENST00000350690	ENST00000329138		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	SLC25A10	chr17	79683080	+	HGS	chr17	79667497	+
Frame-shit	ENST00000545862	ENST00000329138		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	SLC25A10	chr17	79683080	+	HGS	chr17	79667497	+
5CDS-intron	ENST00000338677	ENST00000443029		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000338677	ENST00000383790		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000338677	ENST00000450816		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000338677	ENST00000383789		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000338677	ENST00000584799		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000267938	ENST00000443029		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000267938	ENST00000383790		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000267938	ENST00000450816		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000267938	ENST00000383789		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000267938	ENST00000584799		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000569423	ENST00000443029		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000569423	ENST00000383790		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000569423	ENST00000450816		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000569423	ENST00000383789		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000569423	ENST00000584799		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000561851	ENST00000443029		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000561851	ENST00000383790		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000561851	ENST00000450816		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000561851	ENST00000383789		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-intron	ENST00000561851	ENST00000584799		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
3UTR-intron	ENST00000562635	ENST00000443029		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
3UTR-intron	ENST00000562635	ENST00000383790		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
3UTR-intron	ENST00000562635	ENST00000450816		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
3UTR-intron	ENST00000562635	ENST00000383789		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
3UTR-intron	ENST00000562635	ENST00000584799		TCGA	LD	BRCA	TCGA-AN-A0XU-01A	UBE2Q2	chr15	76146828	+	METTL6	chr3	15480895	-
5CDS-5UTR	ENST00000368346	ENST00000368232		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000368346	ENST00000438976		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000368346	ENST00000497287		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000368346	ENST00000334588		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000392403	ENST00000368232		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000392403	ENST00000438976		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000392403	ENST00000497287		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000392403	ENST00000334588		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
intron-5UTR	ENST00000548830	ENST00000368232		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
intron-intron	ENST00000548830	ENST00000438976		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
intron-intron	ENST00000548830	ENST00000497287		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
intron-5UTR	ENST00000548830	ENST00000334588		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	ASH1L	chr1	155317447	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000367042	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367042	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367042	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367042	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000354848	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000354848	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000354848	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000354848	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000441839	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000441839	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000441839	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000441839	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000322875	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000322875	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000322875	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000322875	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000367041	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367041	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367041	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367041	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000358170	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000358170	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000358170	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000358170	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000322918	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000322918	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000322918	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000322918	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000361067	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000361067	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000361067	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000361067	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000367047	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367047	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367047	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000367047	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000357714	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000357714	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000357714	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000357714	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
3UTR-5UTR	ENST00000469535	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
3UTR-intron	ENST00000469535	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
3UTR-intron	ENST00000469535	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
3UTR-intron	ENST00000469535	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000360212	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000360212	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000360212	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000360212	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-5UTR	ENST00000480003	ENST00000391997		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000480003	ENST00000497198		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000480003	ENST00000456239		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-intron	ENST00000480003	ENST00000340129		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	CD46	chr1	207925654	+	PDC	chr1	186418615	-
5CDS-3UTR	ENST00000401827	ENST00000519049		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000401827	ENST00000523211		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000401827	ENST00000328472		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000396642	ENST00000519049		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000396642	ENST00000523211		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000396642	ENST00000328472		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000379419	ENST00000519049		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000379419	ENST00000523211		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000379419	ENST00000328472		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000518667	ENST00000519049		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000518667	ENST00000523211		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
intron-3UTR	ENST00000518667	ENST00000328472		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	PDE7A	chr8	66753606	-	NKAIN3	chr8	63492098	+
5UTR-5UTR	ENST00000341084	ENST00000520468		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000297564		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000520271		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000517682		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000524245		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000522940		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000518171		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
5UTR-5UTR	ENST00000341084	ENST00000523016		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000520468		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000297564		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000520271		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000517682		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000524245		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000522940		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000518171		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000519449	ENST00000523016		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000520468		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000297564		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000520271		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000517682		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000524245		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000522940		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000518171		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000523255	ENST00000523016		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	RNF19A	chr8	101322095	-	COX6C	chr8	100904280	-
In-frame	ENST00000297578	ENST00000445593		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	SLC25A32	chr8	104427012	-	LAPTM4B	chr8	98863625	+
In-frame	ENST00000297578	ENST00000521545		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	SLC25A32	chr8	104427012	-	LAPTM4B	chr8	98863625	+
5UTR-3CDS	ENST00000543107	ENST00000445593		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	SLC25A32	chr8	104427012	-	LAPTM4B	chr8	98863625	+
5UTR-3CDS	ENST00000543107	ENST00000521545		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	SLC25A32	chr8	104427012	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000523701	ENST00000445593		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	SLC25A32	chr8	104427012	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000523701	ENST00000521545		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	SLC25A32	chr8	104427012	-	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000537855	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000537855	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000537855	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
Frame-shit	ENST00000379096	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
5CDS-5UTR	ENST00000379096	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
5CDS-intron	ENST00000379096	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
Frame-shit	ENST00000518937	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
5CDS-5UTR	ENST00000518937	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
5CDS-intron	ENST00000518937	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-3CDS	ENST00000519303	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000519303	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000519303	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-3CDS	ENST00000517427	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000517427	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000517427	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-3CDS	ENST00000520527	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000520527	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000520527	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-3CDS	ENST00000448733	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000448733	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000448733	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-3CDS	ENST00000379097	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000379097	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000379097	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-3CDS	ENST00000523395	ENST00000357849		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-5UTR	ENST00000523395	ENST00000517736		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
intron-intron	ENST00000523395	ENST00000519963		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	TPD52	chr8	81083660	-	COPS5	chr8	67971680	-
In-frame	ENST00000310421	ENST00000027335		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	VCPIP1	chr8	67563693	-	CDH17	chr8	95178204	-
In-frame	ENST00000310421	ENST00000441892		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	VCPIP1	chr8	67563693	-	CDH17	chr8	95178204	-
In-frame	ENST00000310421	ENST00000450165		TCGA	LD	BRCA	TCGA-AN-A0XV-01A	VCPIP1	chr8	67563693	-	CDH17	chr8	95178204	-
3UTR-3CDS	ENST00000540900	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
3UTR-3CDS	ENST00000540900	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000584423	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000584423	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000247026	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000247026	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000479218	ENST00000336915		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000479218	ENST00000584924		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	NSRP1	chr17	28443881	+	SKAP1	chr17	46474147	-
5CDS-intron	ENST00000369110	ENST00000294309		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	PREP	chr6	105850722	-	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000369110	ENST00000542467		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	PREP	chr6	105850722	-	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000369110	ENST00000442692		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	PREP	chr6	105850722	-	TPCN2	chr11	68902903	+
Frame-shit	ENST00000367669	ENST00000414007		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	RFWD2	chr1	176175708	-	SRGAP2	chr1	206631969	+
In-frame	ENST00000367669	ENST00000419187		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	RFWD2	chr1	176175708	-	SRGAP2	chr1	206631969	+
5CDS-intron	ENST00000367669	ENST00000471256		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	RFWD2	chr1	176175708	-	SRGAP2	chr1	206631969	+
Frame-shit	ENST00000308769	ENST00000414007		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	RFWD2	chr1	176175708	-	SRGAP2	chr1	206631969	+
In-frame	ENST00000308769	ENST00000419187		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	RFWD2	chr1	176175708	-	SRGAP2	chr1	206631969	+
5CDS-intron	ENST00000308769	ENST00000471256		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	RFWD2	chr1	176175708	-	SRGAP2	chr1	206631969	+
5CDS-5UTR	ENST00000399002	ENST00000575291		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SPTLC3	chr20	13107364	+	MRPL45P2	chr17	45534159	-
3UTR-5UTR	ENST00000378194	ENST00000575291		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SPTLC3	chr20	13107364	+	MRPL45P2	chr17	45534159	-
intron-5UTR	ENST00000476791	ENST00000575291		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SPTLC3	chr20	13107364	+	MRPL45P2	chr17	45534159	-
5CDS-intron	ENST00000269033	ENST00000544907		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
5CDS-5UTR	ENST00000269033	ENST00000226225		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
5CDS-intron	ENST00000269033	ENST00000583213		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
5CDS-intron	ENST00000540801	ENST00000544907		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
5CDS-5UTR	ENST00000540801	ENST00000226225		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
5CDS-intron	ENST00000540801	ENST00000583213		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000324677	ENST00000544907		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-5UTR	ENST00000324677	ENST00000226225		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000324677	ENST00000583213		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000582084	ENST00000544907		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-5UTR	ENST00000582084	ENST00000226225		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000582084	ENST00000583213		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000590153	ENST00000544907		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-5UTR	ENST00000590153	ENST00000226225		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000590153	ENST00000583213		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000579954	ENST00000544907		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-5UTR	ENST00000579954	ENST00000226225		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
intron-intron	ENST00000579954	ENST00000583213		TCGA	LD	BRCA	TCGA-AN-A0XW-01A	SSH2	chr17	28120912	-	TNFAIP1	chr17	26666434	+
5CDS-5UTR	ENST00000421999	ENST00000361722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	CMSS1	chr3	99536887	+	TBKBP1	chr17	45773445	+
3UTR-5UTR	ENST00000496116	ENST00000361722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	CMSS1	chr3	99536887	+	TBKBP1	chr17	45773445	+
intron-5UTR	ENST00000489081	ENST00000361722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	CMSS1	chr3	99536887	+	TBKBP1	chr17	45773445	+
Frame-shit	ENST00000397786	ENST00000262291		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000397786	ENST00000537567		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000397786	ENST00000539763		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000397786	ENST00000536180		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000397786	ENST00000545362		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
5CDS-intron	ENST00000397786	ENST00000588617		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
intron-3CDS	ENST00000580896	ENST00000262291		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
intron-3CDS	ENST00000580896	ENST00000537567		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
intron-3CDS	ENST00000580896	ENST00000539763		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
intron-3CDS	ENST00000580896	ENST00000536180		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
intron-3CDS	ENST00000580896	ENST00000545362		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
intron-intron	ENST00000580896	ENST00000588617		TCGA	LD	BRCA	TCGA-AO-A03L-01A	MED13	chr17	60028186	-	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000439951	ENST00000540582		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5UTR-3CDS	ENST00000439951	ENST00000374491		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5UTR-3CDS	ENST00000439951	ENST00000374492		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5UTR-5UTR	ENST00000439951	ENST00000541621		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5UTR-5UTR	ENST00000439951	ENST00000542871		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
Frame-shit	ENST00000313733	ENST00000540582		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
Frame-shit	ENST00000313733	ENST00000374491		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
Frame-shit	ENST00000313733	ENST00000374492		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5CDS-5UTR	ENST00000313733	ENST00000541621		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5CDS-5UTR	ENST00000313733	ENST00000542871		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
Frame-shit	ENST00000358053	ENST00000540582		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
Frame-shit	ENST00000358053	ENST00000374491		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
Frame-shit	ENST00000358053	ENST00000374492		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5CDS-5UTR	ENST00000358053	ENST00000541621		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
5CDS-5UTR	ENST00000358053	ENST00000542871		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
intron-3CDS	ENST00000471817	ENST00000540582		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
intron-3CDS	ENST00000471817	ENST00000374491		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
intron-3CDS	ENST00000471817	ENST00000374492		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
intron-5UTR	ENST00000471817	ENST00000541621		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
intron-5UTR	ENST00000471817	ENST00000542871		TCGA	LD	BRCA	TCGA-AO-A03L-01A	OSBPL2	chr20	60831277	+	EDEM2	chr20	33730281	-
intron-intron	ENST00000370053	ENST00000447054		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000370053	ENST00000265022		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000370053	ENST00000344484		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000370053	ENST00000382164		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000370053	ENST00000544847		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000540534	ENST00000447054		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000540534	ENST00000265022		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000540534	ENST00000344484		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000540534	ENST00000382164		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
intron-intron	ENST00000540534	ENST00000544847		TCGA	LD	BRCA	TCGA-AO-A03L-01A	STMN3	chr20	62272652	-	DGKG	chr3	185998533	-
5CDS-intron	ENST00000433971	ENST00000447054		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000433971	ENST00000265022		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000433971	ENST00000344484		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000433971	ENST00000382164		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000433971	ENST00000544847		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000345063	ENST00000447054		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000345063	ENST00000265022		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000345063	ENST00000344484		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000345063	ENST00000382164		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
5CDS-intron	ENST00000345063	ENST00000544847		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
intron-intron	ENST00000488841	ENST00000447054		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
intron-intron	ENST00000488841	ENST00000265022		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
intron-intron	ENST00000488841	ENST00000344484		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
intron-intron	ENST00000488841	ENST00000382164		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
intron-intron	ENST00000488841	ENST00000544847		TCGA	LD	BRCA	TCGA-AO-A03L-01A	TPRG1	chr3	188933172	+	DGKG	chr3	185983095	-
Frame-shit	ENST00000349714	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000349714	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000349714	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000349714	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000349714	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000349714	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000349714	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000349714	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000349714	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000359226	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000359226	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000359226	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000359226	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000359226	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000359226	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000359226	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000359226	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000359226	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374384	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374384	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374384	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374384	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374384	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374384	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374384	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374384	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374384	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374380	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374380	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374380	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374380	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374380	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374380	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374380	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374380	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374380	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374385	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374385	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374385	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374385	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374385	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374385	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374385	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374385	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374385	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374377	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374377	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374377	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374377	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374377	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000374377	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374377	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374377	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000374377	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397556	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397556	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397556	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397556	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397556	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397556	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000397556	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000397556	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000397556	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000407996	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000407996	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000407996	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000407996	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000407996	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000407996	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000407996	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000407996	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000407996	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000540457	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000540457	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000540457	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000540457	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000540457	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000540457	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000540457	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000540457	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000540457	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000542501	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000542501	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000542501	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000542501	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000542501	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000542501	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000542501	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000542501	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-intron	ENST00000542501	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397554	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397554	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397554	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397554	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397554	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
Frame-shit	ENST00000397554	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000397554	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000397554	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5CDS-intron	ENST00000397554	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-3CDS	ENST00000491125	ENST00000382722		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-3CDS	ENST00000491125	ENST00000587995		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-3CDS	ENST00000491125	ENST00000588077		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-3CDS	ENST00000491125	ENST00000586184		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-3CDS	ENST00000491125	ENST00000585708		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-3CDS	ENST00000491125	ENST00000585732		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-intron	ENST00000491125	ENST00000539048		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-intron	ENST00000491125	ENST00000538450		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
5UTR-intron	ENST00000491125	ENST00000538027		TCGA	LD	BRCA	TCGA-AO-A03L-01A	UQCC1	chr20	33954360	-	CACNA2D4	chr12	1919753	-
intron-3CDS	ENST00000391777	ENST00000348547		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF321P	chr19	53445794	-	ERGIC3	chr20	34130072	+
intron-3CDS	ENST00000391777	ENST00000357394		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF321P	chr19	53445794	-	ERGIC3	chr20	34130072	+
intron-3CDS	ENST00000391777	ENST00000279052		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF321P	chr19	53445794	-	ERGIC3	chr20	34130072	+
intron-3CDS	ENST00000391777	ENST00000447986		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF321P	chr19	53445794	-	ERGIC3	chr20	34130072	+
intron-intron	ENST00000391777	ENST00000482338		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF321P	chr19	53445794	-	ERGIC3	chr20	34130072	+
5CDS-5UTR	ENST00000316462	ENST00000318203		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF587B	chr19	58331313	+	ZSCAN4	chr19	58181613	+
intron-5UTR	ENST00000442832	ENST00000318203		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF587B	chr19	58331313	+	ZSCAN4	chr19	58181613	+
intron-5UTR	ENST00000594901	ENST00000318203		TCGA	LD	BRCA	TCGA-AO-A03L-01A	ZNF587B	chr19	58331313	+	ZSCAN4	chr19	58181613	+
In-frame	ENST00000361383	ENST00000371497		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000361383	ENST00000603338		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
Frame-shit	ENST00000361383	ENST00000329613		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000405275	ENST00000371497		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000405275	ENST00000603338		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
Frame-shit	ENST00000405275	ENST00000329613		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000373473	ENST00000371497		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000373473	ENST00000603338		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
Frame-shit	ENST00000373473	ENST00000329613		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
3UTR-3CDS	ENST00000473857	ENST00000371497		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
3UTR-3CDS	ENST00000473857	ENST00000603338		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
3UTR-3CDS	ENST00000473857	ENST00000329613		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000373469	ENST00000371497		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
In-frame	ENST00000373469	ENST00000603338		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
Frame-shit	ENST00000373469	ENST00000329613		TCGA	LD	BRCA	TCGA-AO-A03M-01B	CTNNBL1	chr20	36431450	+	TSHZ2	chr20	51870038	+
5CDS-intron	ENST00000583610	ENST00000578861		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000583610	ENST00000580219		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000583610	ENST00000452859		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000583610	ENST00000393405		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000583610	ENST00000439357		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000583610	ENST00000359238		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000583610	ENST00000582104		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000394294	ENST00000578861		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000394294	ENST00000580219		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000394294	ENST00000452859		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000394294	ENST00000393405		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000394294	ENST00000439357		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000394294	ENST00000359238		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000394294	ENST00000582104		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000264658	ENST00000578861		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000264658	ENST00000580219		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000264658	ENST00000452859		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000264658	ENST00000393405		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000264658	ENST00000439357		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000264658	ENST00000359238		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000264658	ENST00000582104		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000577399	ENST00000578861		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-intron	ENST00000577399	ENST00000580219		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000577399	ENST00000452859		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000577399	ENST00000393405		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000577399	ENST00000439357		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000577399	ENST00000359238		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
5CDS-5UTR	ENST00000577399	ENST00000582104		TCGA	LD	BRCA	TCGA-AO-A03M-01B	FBXL20	chr17	37499433	-	SNX11	chr17	46196373	+
Frame-shit	ENST00000373664	ENST00000361383		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
Frame-shit	ENST00000373664	ENST00000405275		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
Frame-shit	ENST00000373664	ENST00000373473		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
5CDS-3UTR	ENST00000373664	ENST00000473857		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
5CDS-3UTR	ENST00000373664	ENST00000373469		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
Frame-shit	ENST00000344359	ENST00000361383		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
Frame-shit	ENST00000344359	ENST00000405275		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
Frame-shit	ENST00000344359	ENST00000373473		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
5CDS-3UTR	ENST00000344359	ENST00000473857		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
5CDS-3UTR	ENST00000344359	ENST00000373469		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
intron-3CDS	ENST00000598590	ENST00000361383		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
intron-3CDS	ENST00000598590	ENST00000405275		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
intron-3CDS	ENST00000598590	ENST00000373473		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
intron-3UTR	ENST00000598590	ENST00000473857		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
intron-3UTR	ENST00000598590	ENST00000373469		TCGA	LD	BRCA	TCGA-AO-A03M-01B	RBL1	chr20	35717392	-	CTNNBL1	chr20	36500327	+
5CDS-3UTR	ENST00000262878	ENST00000484427		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SAMHD1	chr20	35526225	-	DDX27	chr20	47852870	+
5CDS-3UTR	ENST00000262878	ENST00000371764		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SAMHD1	chr20	35526225	-	DDX27	chr20	47852870	+
intron-3UTR	ENST00000373694	ENST00000484427		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SAMHD1	chr20	35526225	-	DDX27	chr20	47852870	+
intron-3UTR	ENST00000373694	ENST00000371764		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SAMHD1	chr20	35526225	-	DDX27	chr20	47852870	+
intron-3CDS	ENST00000362582	ENST00000371440		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SNHG17	chr20	37055062	-	BCAS1	chr20	52612589	-
intron-3CDS	ENST00000362582	ENST00000371435		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SNHG17	chr20	37055062	-	BCAS1	chr20	52612589	-
intron-3CDS	ENST00000362582	ENST00000395961		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SNHG17	chr20	37055062	-	BCAS1	chr20	52612589	-
intron-5UTR	ENST00000362582	ENST00000434986		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SNHG17	chr20	37055062	-	BCAS1	chr20	52612589	-
intron-intron	ENST00000362582	ENST00000411563		TCGA	LD	BRCA	TCGA-AO-A03M-01B	SNHG17	chr20	37055062	-	BCAS1	chr20	52612589	-
Frame-shit	ENST00000371471	ENST00000371754		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
5CDS-5UTR	ENST00000371471	ENST00000469991		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
5CDS-intron	ENST00000371471	ENST00000371752		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
5CDS-intron	ENST00000371471	ENST00000396105		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
Frame-shit	ENST00000302342	ENST00000371754		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
5CDS-5UTR	ENST00000302342	ENST00000469991		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
5CDS-intron	ENST00000302342	ENST00000371752		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
5CDS-intron	ENST00000302342	ENST00000396105		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
intron-3CDS	ENST00000540425	ENST00000371754		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
intron-5UTR	ENST00000540425	ENST00000469991		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
intron-intron	ENST00000540425	ENST00000371752		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
intron-intron	ENST00000540425	ENST00000396105		TCGA	LD	BRCA	TCGA-AO-A03M-01B	ZNF217	chr20	52192266	-	ZNFX1	chr20	47855837	-
Frame-shit	ENST00000536015	ENST00000256854		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ATP8B1	chr18	55398859	-	NARS	chr18	55278939	-
5CDS-intron	ENST00000536015	ENST00000423481		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ATP8B1	chr18	55398859	-	NARS	chr18	55278939	-
Frame-shit	ENST00000283684	ENST00000256854		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ATP8B1	chr18	55398859	-	NARS	chr18	55278939	-
5CDS-intron	ENST00000283684	ENST00000423481		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ATP8B1	chr18	55398859	-	NARS	chr18	55278939	-
intron-3CDS	ENST00000589147	ENST00000256854		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ATP8B1	chr18	55398859	-	NARS	chr18	55278939	-
intron-intron	ENST00000589147	ENST00000423481		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ATP8B1	chr18	55398859	-	NARS	chr18	55278939	-
Frame-shit	ENST00000382004	ENST00000221452		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000382004	ENST00000540120		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000382004	ENST00000505236		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000358730	ENST00000221452		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000358730	ENST00000540120		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000358730	ENST00000505236		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000302303	ENST00000221452		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000302303	ENST00000540120		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000302303	ENST00000505236		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000381984	ENST00000221452		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000381984	ENST00000540120		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
Frame-shit	ENST00000381984	ENST00000505236		TCGA	LD	BRCA	TCGA-AO-A03O-01A	RFX3	chr9	3395472	-	RELB	chr19	45528587	+
In-frame	ENST00000355528	ENST00000546373		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000355528	ENST00000551568		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000355528	ENST00000338356		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000355528	ENST00000549691		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000397466	ENST00000546373		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000397466	ENST00000551568		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000397466	ENST00000338356		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000397466	ENST00000549691		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000539345	ENST00000546373		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000539345	ENST00000551568		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000539345	ENST00000338356		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000539345	ENST00000549691		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000576691	ENST00000546373		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000576691	ENST00000551568		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000576691	ENST00000338356		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
intron-intron	ENST00000576691	ENST00000549691		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBCD	chr17	80772810	+	CPM	chr12	69279669	-
In-frame	ENST00000331710	ENST00000556611		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBK1	chr12	64849737	+	ARHGAP5	chr14	32586346	+
In-frame	ENST00000331710	ENST00000539826		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBK1	chr12	64849737	+	ARHGAP5	chr14	32586346	+
5CDS-intron	ENST00000331710	ENST00000396582		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBK1	chr12	64849737	+	ARHGAP5	chr14	32586346	+
5CDS-intron	ENST00000331710	ENST00000432921		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBK1	chr12	64849737	+	ARHGAP5	chr14	32586346	+
5CDS-intron	ENST00000331710	ENST00000345122		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBK1	chr12	64849737	+	ARHGAP5	chr14	32586346	+
5CDS-5UTR	ENST00000331710	ENST00000433497		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TBK1	chr12	64849737	+	ARHGAP5	chr14	32586346	+
Frame-shit	ENST00000344204	ENST00000373030		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
Frame-shit	ENST00000344204	ENST00000373039		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
5CDS-intron	ENST00000344204	ENST00000471199		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
Frame-shit	ENST00000537187	ENST00000373030		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
Frame-shit	ENST00000537187	ENST00000373039		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
5CDS-intron	ENST00000537187	ENST00000471199		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
intron-3CDS	ENST00000509967	ENST00000373030		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
intron-3CDS	ENST00000509967	ENST00000373039		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
intron-intron	ENST00000509967	ENST00000471199		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
intron-3CDS	ENST00000515710	ENST00000373030		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
intron-3CDS	ENST00000515710	ENST00000373039		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
intron-intron	ENST00000515710	ENST00000471199		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
Frame-shit	ENST00000344135	ENST00000373030		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
Frame-shit	ENST00000344135	ENST00000373039		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
5CDS-intron	ENST00000344135	ENST00000471199		TCGA	LD	BRCA	TCGA-AO-A03O-01A	TRIO	chr5	14502766	+	IFT52	chr20	42232400	+
Frame-shit	ENST00000373382	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000373382	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000373382	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000263559	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000263559	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000263559	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000395098	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000395098	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000395098	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000546041	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000546041	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000546041	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
3UTR-3CDS	ENST00000490696	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
3UTR-intron	ENST00000490696	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
3UTR-5UTR	ENST00000490696	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5UTR-3CDS	ENST00000541711	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5UTR-intron	ENST00000541711	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5UTR-5UTR	ENST00000541711	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000489794	ENST00000342560		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000489794	ENST00000372952		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000489794	ENST00000537864		TCGA	LD	BRCA	TCGA-AO-A03O-01A	VPS26A	chr10	70892803	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000344930	ENST00000217429		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ZNF107	chr7	64152338	+	FAM83D	chr20	37570602	+
Frame-shit	ENST00000423627	ENST00000217429		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ZNF107	chr7	64152338	+	FAM83D	chr20	37570602	+
Frame-shit	ENST00000395391	ENST00000217429		TCGA	LD	BRCA	TCGA-AO-A03O-01A	ZNF107	chr7	64152338	+	FAM83D	chr20	37570602	+
Frame-shit	ENST00000371917	ENST00000244061		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ARFGEF2	chr20	47538547	+	RNF114	chr20	48558098	+
intron-3CDS	ENST00000493140	ENST00000244061		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ARFGEF2	chr20	47538547	+	RNF114	chr20	48558098	+
In-frame	ENST00000284509	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ATP8B4	chr15	50303042	-	MGMT	chr10	131334505	+
5CDS-intron	ENST00000284509	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ATP8B4	chr15	50303042	-	MGMT	chr10	131334505	+
Frame-shit	ENST00000559829	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ATP8B4	chr15	50303042	-	MGMT	chr10	131334505	+
5CDS-intron	ENST00000559829	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ATP8B4	chr15	50303042	-	MGMT	chr10	131334505	+
5UTR-3CDS	ENST00000558959	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ATP8B4	chr15	50303042	-	MGMT	chr10	131334505	+
5UTR-intron	ENST00000558959	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ATP8B4	chr15	50303042	-	MGMT	chr10	131334505	+
Frame-shit	ENST00000242505	ENST00000404771		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000372440		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000372443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000286628		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000286627		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000354353		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000404857		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000242505	ENST00000406533		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000242505	ENST00000484507		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000242505	ENST00000481070		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000242505	ENST00000480683		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000404771		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000372440		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000372443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000286628		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000286627		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000354353		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000404857		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000607940	ENST00000406533		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000607940	ENST00000484507		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000607940	ENST00000481070		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000607940	ENST00000480683		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FAM149B1	chr10	74970196	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000415807	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000415807	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000415807	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000415807	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000415807	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000336824	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000336824	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000336824	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000336824	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000336824	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000416957	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000416957	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000416957	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000416957	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000416957	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000392699	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000392699	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000392699	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000392699	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3UTR	ENST00000392699	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000421757	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000421757	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000421757	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000421757	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3UTR	ENST00000421757	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000423424	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000423424	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000423424	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000423424	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3UTR	ENST00000423424	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000476794	ENST00000457714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000476794	ENST00000361589		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000476794	ENST00000401917		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000476794	ENST00000545397		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
intron-3UTR	ENST00000476794	ENST00000466350		TCGA	LD	BRCA	TCGA-AO-A03P-01A	FNDC3B	chr3	171944737	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000327171	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
Frame-shit	ENST00000560031	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
Frame-shit	ENST00000396509	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
Frame-shit	ENST00000543495	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
Frame-shit	ENST00000544523	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
Frame-shit	ENST00000559454	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
3UTR-3CDS	ENST00000561014	ENST00000253719		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GALK2	chr15	49531564	+	NAPSA	chr19	50865570	-
5CDS-5UTR	ENST00000327946	ENST00000535714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GRID1	chr10	87898576	-	PGPEP1L	chr15	99514387	-
5CDS-5UTR	ENST00000327946	ENST00000378919		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GRID1	chr10	87898576	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000536331	ENST00000535714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GRID1	chr10	87898576	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000536331	ENST00000378919		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GRID1	chr10	87898576	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000552278	ENST00000535714		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GRID1	chr10	87898576	-	PGPEP1L	chr15	99514387	-
intron-5UTR	ENST00000552278	ENST00000378919		TCGA	LD	BRCA	TCGA-AO-A03P-01A	GRID1	chr10	87898576	-	PGPEP1L	chr15	99514387	-
In-frame	ENST00000368594	ENST00000242505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134563349	+	FAM149B1	chr10	74999070	+
5CDS-intron	ENST00000368594	ENST00000607940		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134563349	+	FAM149B1	chr10	74999070	+
In-frame	ENST00000368593	ENST00000242505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134563349	+	FAM149B1	chr10	74999070	+
5CDS-intron	ENST00000368593	ENST00000607940		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134563349	+	FAM149B1	chr10	74999070	+
intron-3CDS	ENST00000487614	ENST00000242505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134563349	+	FAM149B1	chr10	74999070	+
intron-intron	ENST00000487614	ENST00000607940		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134563349	+	FAM149B1	chr10	74999070	+
Frame-shit	ENST00000368594	ENST00000381885		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000396923		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000360301		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000360135		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000334933		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000420765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000381879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368594	ENST00000348806		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
5CDS-intron	ENST00000368594	ENST00000432870		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000381885		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000396923		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000360301		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000360135		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000334933		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000420765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000381879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
Frame-shit	ENST00000368593	ENST00000348806		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
5CDS-intron	ENST00000368593	ENST00000432870		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000381885		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000396923		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000360301		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000360135		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000334933		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000420765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000381879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-3CDS	ENST00000487614	ENST00000348806		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
intron-intron	ENST00000487614	ENST00000432870		TCGA	LD	BRCA	TCGA-AO-A03P-01A	INPP5A	chr10	134579350	+	PPIP5K1	chr15	43831781	-
In-frame	ENST00000399262	ENST00000380877		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
In-frame	ENST00000399262	ENST00000220429		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5CDS-intron	ENST00000399262	ENST00000543881		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5CDS-intron	ENST00000399262	ENST00000429662		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5CDS-intron	ENST00000399262	ENST00000396464		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5CDS-intron	ENST00000399262	ENST00000359031		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5CDS-intron	ENST00000399262	ENST00000560825		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-3CDS	ENST00000402544	ENST00000380877		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-3CDS	ENST00000402544	ENST00000220429		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000402544	ENST00000543881		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000402544	ENST00000429662		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000402544	ENST00000396464		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000402544	ENST00000359031		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000402544	ENST00000560825		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-3CDS	ENST00000399251	ENST00000380877		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-3CDS	ENST00000399251	ENST00000220429		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-intron	ENST00000399251	ENST00000543881		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-intron	ENST00000399251	ENST00000429662		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-intron	ENST00000399251	ENST00000396464		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-intron	ENST00000399251	ENST00000359031		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
5UTR-intron	ENST00000399251	ENST00000560825		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-3CDS	ENST00000542921	ENST00000380877		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-3CDS	ENST00000542921	ENST00000220429		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000542921	ENST00000543881		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000542921	ENST00000429662		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000542921	ENST00000396464		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000542921	ENST00000359031		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000542921	ENST00000560825		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-3CDS	ENST00000489372	ENST00000380877		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-3CDS	ENST00000489372	ENST00000220429		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000489372	ENST00000543881		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000489372	ENST00000429662		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000489372	ENST00000396464		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000489372	ENST00000359031		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
intron-intron	ENST00000489372	ENST00000560825		TCGA	LD	BRCA	TCGA-AO-A03P-01A	JMJD1C	chr10	65225255	-	GABPB1	chr15	50601995	-
In-frame	ENST00000406337	ENST00000520810		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
In-frame	ENST00000406337	ENST00000416505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
In-frame	ENST00000406337	ENST00000519735		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
In-frame	ENST00000406337	ENST00000520835		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000406337	ENST00000379708		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000406337	ENST00000518983		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000406337	ENST00000522147		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000406337	ENST00000522785		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000265713	ENST00000520810		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000265713	ENST00000416505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000265713	ENST00000519735		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000265713	ENST00000520835		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000265713	ENST00000379708		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000265713	ENST00000518983		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000265713	ENST00000522147		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000265713	ENST00000522785		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000396930	ENST00000520810		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000396930	ENST00000416505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000396930	ENST00000519735		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000396930	ENST00000520835		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000396930	ENST00000379708		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000396930	ENST00000518983		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000396930	ENST00000522147		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000396930	ENST00000522785		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000485568	ENST00000520810		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000485568	ENST00000416505		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000485568	ENST00000519735		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000485568	ENST00000520835		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000485568	ENST00000379708		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000485568	ENST00000518983		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000485568	ENST00000522147		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
5CDS-intron	ENST00000485568	ENST00000522785		TCGA	LD	BRCA	TCGA-AO-A03P-01A	KAT6A	chr8	41905896	-	IKBKB	chr8	42162705	+
Frame-shit	ENST00000401998	ENST00000267970		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000401998	ENST00000346495		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000401998	ENST00000424443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000401998	ENST00000561277		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000401998	ENST00000559494		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000401998	ENST00000558745		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000401998	ENST00000558394		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000361114	ENST00000267970		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000361114	ENST00000346495		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000361114	ENST00000424443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000361114	ENST00000561277		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000361114	ENST00000559494		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000361114	ENST00000558745		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000361114	ENST00000558394		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000398761	ENST00000267970		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000398761	ENST00000346495		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000398761	ENST00000424443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000398761	ENST00000561277		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000398761	ENST00000559494		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000398761	ENST00000558745		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000398761	ENST00000558394		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000418483	ENST00000267970		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000418483	ENST00000346495		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000418483	ENST00000424443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000418483	ENST00000561277		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000418483	ENST00000559494		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000418483	ENST00000558745		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000418483	ENST00000558394		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000398763	ENST00000267970		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000398763	ENST00000346495		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000398763	ENST00000424443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000398763	ENST00000561277		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000398763	ENST00000559494		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000398763	ENST00000558745		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000398763	ENST00000558394		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000604025	ENST00000267970		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000604025	ENST00000346495		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000604025	ENST00000424443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000604025	ENST00000561277		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000604025	ENST00000559494		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000604025	ENST00000558745		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000604025	ENST00000558394		TCGA	LD	BRCA	TCGA-AO-A03P-01A	MICU1	chr10	74293504	-	TSPAN3	chr15	77348597	-
5UTR-3CDS	ENST00000439951	ENST00000356327		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5UTR-3CDS	ENST00000439951	ENST00000351298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5UTR-3UTR	ENST00000439951	ENST00000342215		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5UTR-3UTR	ENST00000439951	ENST00000340989		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5UTR-intron	ENST00000439951	ENST00000497307		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
Frame-shit	ENST00000313733	ENST00000356327		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
Frame-shit	ENST00000313733	ENST00000351298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-3UTR	ENST00000313733	ENST00000342215		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-3UTR	ENST00000313733	ENST00000340989		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-intron	ENST00000313733	ENST00000497307		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
Frame-shit	ENST00000358053	ENST00000356327		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
Frame-shit	ENST00000358053	ENST00000351298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-3UTR	ENST00000358053	ENST00000342215		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-3UTR	ENST00000358053	ENST00000340989		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-intron	ENST00000358053	ENST00000497307		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
intron-3CDS	ENST00000471817	ENST00000356327		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
intron-3CDS	ENST00000471817	ENST00000351298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
intron-3UTR	ENST00000471817	ENST00000342215		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
intron-3UTR	ENST00000471817	ENST00000340989		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
intron-intron	ENST00000471817	ENST00000497307		TCGA	LD	BRCA	TCGA-AO-A03P-01A	OSBPL2	chr20	60838747	+	PLD1	chr3	171338310	-
5CDS-5UTR	ENST00000336578	ENST00000558879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000336578	ENST00000301981		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000336578	ENST00000422500		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000336578	ENST00000442993		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000336578	ENST00000447360		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000336578	ENST00000331450		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-3UTR	ENST00000336578	ENST00000559399		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000358769	ENST00000558879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000358769	ENST00000301981		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000358769	ENST00000422500		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000358769	ENST00000442993		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000358769	ENST00000447360		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000358769	ENST00000331450		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-3UTR	ENST00000358769	ENST00000559399		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000309049	ENST00000558879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000309049	ENST00000301981		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000309049	ENST00000422500		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000309049	ENST00000442993		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000309049	ENST00000447360		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000309049	ENST00000331450		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-3UTR	ENST00000309049	ENST00000559399		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000432941	ENST00000558879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000432941	ENST00000301981		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000432941	ENST00000422500		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000432941	ENST00000442993		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000432941	ENST00000447360		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000432941	ENST00000331450		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-3UTR	ENST00000432941	ENST00000559399		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000495025	ENST00000558879		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000495025	ENST00000301981		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000495025	ENST00000422500		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000495025	ENST00000442993		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000495025	ENST00000447360		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-5UTR	ENST00000495025	ENST00000331450		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5CDS-3UTR	ENST00000495025	ENST00000559399		TCGA	LD	BRCA	TCGA-AO-A03P-01A	PBLD	chr10	70048240	-	LRRC28	chr15	99796103	+
5UTR-3CDS	ENST00000336787	ENST00000568606		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000336787	ENST00000260324		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000396307	ENST00000568606		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000396307	ENST00000260324		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000564609	ENST00000568606		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000564609	ENST00000260324		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000569493	ENST00000568606		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
5UTR-3CDS	ENST00000569493	ENST00000260324		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
intron-3CDS	ENST00000561545	ENST00000568606		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
intron-3CDS	ENST00000561545	ENST00000260324		TCGA	LD	BRCA	TCGA-AO-A03P-01A	RAB27A	chr15	55562363	-	SQRDL	chr15	45968299	+
In-frame	ENST00000261866	ENST00000351293		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000261866	ENST00000322635		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000261866	ENST00000394762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000261866	ENST00000423381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000261866	ENST00000322680		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000261866	ENST00000305762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000261866	ENST00000372765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
5CDS-intron	ENST00000261866	ENST00000472912		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
5CDS-intron	ENST00000261866	ENST00000444854		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000351293		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000322635		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000394762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000423381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000322680		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000305762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000535302	ENST00000372765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000535302	ENST00000472912		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000535302	ENST00000444854		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000351293		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000322635		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000394762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000423381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000322680		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000305762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000427534	ENST00000372765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
5CDS-intron	ENST00000427534	ENST00000472912		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
5CDS-intron	ENST00000427534	ENST00000444854		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000351293		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000322635		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000394762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000423381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000322680		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000305762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558319	ENST00000372765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000558319	ENST00000472912		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000558319	ENST00000444854		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000351293		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000322635		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000394762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000423381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000322680		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000305762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000558253	ENST00000372765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000558253	ENST00000472912		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000558253	ENST00000444854		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000351293		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000322635		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000394762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000423381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000322680		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000305762		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-3CDS	ENST00000559193	ENST00000372765		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000559193	ENST00000472912		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
intron-intron	ENST00000559193	ENST00000444854		TCGA	LD	BRCA	TCGA-AO-A03P-01A	SPG11	chr15	44865745	-	CAMK2G	chr10	75613004	-
In-frame	ENST00000355327	ENST00000249750		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000355327	ENST00000347587		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000355327	ENST00000537372		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000355327	ENST00000558231		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
5CDS-intron	ENST00000355327	ENST00000559517		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
5CDS-intron	ENST00000355327	ENST00000559579		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000261862	ENST00000249750		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000261862	ENST00000347587		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000261862	ENST00000537372		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000261862	ENST00000558231		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
5CDS-intron	ENST00000261862	ENST00000559517		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
5CDS-intron	ENST00000261862	ENST00000559579		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000357769	ENST00000249750		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000357769	ENST00000347587		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000357769	ENST00000537372		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000357769	ENST00000558231		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-intron	ENST00000357769	ENST00000559517		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-intron	ENST00000357769	ENST00000559579		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000567838	ENST00000249750		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000567838	ENST00000347587		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000567838	ENST00000537372		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-3CDS	ENST00000567838	ENST00000558231		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-intron	ENST00000567838	ENST00000559517		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
intron-intron	ENST00000567838	ENST00000559579		TCGA	LD	BRCA	TCGA-AO-A03P-01A	THSD4	chr15	71704162	+	ALDH1A2	chr15	58306479	-
In-frame	ENST00000290650	ENST00000359655		TCGA	LD	BRCA	TCGA-AO-A03P-01A	UBR1	chr15	43258351	-	SUPV3L1	chr10	70945743	+
5CDS-3UTR	ENST00000290650	ENST00000483572		TCGA	LD	BRCA	TCGA-AO-A03P-01A	UBR1	chr15	43258351	-	SUPV3L1	chr10	70945743	+
3UTR-3CDS	ENST00000382177	ENST00000359655		TCGA	LD	BRCA	TCGA-AO-A03P-01A	UBR1	chr15	43258351	-	SUPV3L1	chr10	70945743	+
3UTR-3UTR	ENST00000382177	ENST00000483572		TCGA	LD	BRCA	TCGA-AO-A03P-01A	UBR1	chr15	43258351	-	SUPV3L1	chr10	70945743	+
intron-3CDS	ENST00000568782	ENST00000359655		TCGA	LD	BRCA	TCGA-AO-A03P-01A	UBR1	chr15	43258351	-	SUPV3L1	chr10	70945743	+
intron-3UTR	ENST00000568782	ENST00000483572		TCGA	LD	BRCA	TCGA-AO-A03P-01A	UBR1	chr15	43258351	-	SUPV3L1	chr10	70945743	+
5UTR-3CDS	ENST00000307179	ENST00000441037		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000307179	ENST00000421325		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000307179	ENST00000389298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000433963	ENST00000441037		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000433963	ENST00000421325		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000433963	ENST00000389298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000396444	ENST00000441037		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000396444	ENST00000421325		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000396444	ENST00000389298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000425032	ENST00000441037		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000425032	ENST00000421325		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000425032	ENST00000389298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
3UTR-3CDS	ENST00000558892	ENST00000441037		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
3UTR-3CDS	ENST00000558892	ENST00000421325		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
3UTR-3CDS	ENST00000558892	ENST00000389298		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	AGBL1	chr15	87217504	+
5UTR-3CDS	ENST00000307179	ENST00000560955		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000307179	ENST00000313478		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-intron	ENST00000307179	ENST00000561443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000433963	ENST00000560955		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000433963	ENST00000313478		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-intron	ENST00000433963	ENST00000561443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000396444	ENST00000560955		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000396444	ENST00000313478		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-intron	ENST00000396444	ENST00000561443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000425032	ENST00000560955		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000425032	ENST00000313478		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-intron	ENST00000425032	ENST00000561443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
3UTR-3CDS	ENST00000558892	ENST00000560955		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
3UTR-3CDS	ENST00000558892	ENST00000313478		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
3UTR-intron	ENST00000558892	ENST00000561443		TCGA	LD	BRCA	TCGA-AO-A03P-01A	USP8	chr15	50716711	+	TRPM7	chr15	50875356	-
5UTR-3CDS	ENST00000301765	ENST00000377892		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-3CDS	ENST00000301765	ENST00000377890		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-3CDS	ENST00000301765	ENST00000377891		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-3CDS	ENST00000301765	ENST00000377889		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-3CDS	ENST00000301765	ENST00000535296		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-3CDS	ENST00000301765	ENST00000338663		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-3UTR	ENST00000301765	ENST00000538682		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
5UTR-5UTR	ENST00000301765	ENST00000536981		TCGA	LD	BRCA	TCGA-AO-A03P-01A	VPS37C	chr11	60928863	-	SLC3A2	chr11	62651929	+
Frame-shit	ENST00000263805	ENST00000539909		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000263805	ENST00000286621		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000263805	ENST00000372734		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000263805	ENST00000541550		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000263805	ENST00000467840		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565380	ENST00000539909		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565380	ENST00000286621		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565380	ENST00000372734		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565380	ENST00000541550		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000565380	ENST00000467840		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565611	ENST00000539909		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565611	ENST00000286621		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565611	ENST00000372734		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000565611	ENST00000541550		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000565611	ENST00000467840		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000565660	ENST00000539909		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000565660	ENST00000286621		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000565660	ENST00000372734		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000565660	ENST00000541550		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
intron-intron	ENST00000565660	ENST00000467840		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF106	chr15	42710003	-	ADK	chr10	76429941	+
Frame-shit	ENST00000339282	ENST00000389282		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000339282	ENST00000599910		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000339282	ENST00000263381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000339282	ENST00000599686		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000339282	ENST00000545156		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000416136	ENST00000389282		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000416136	ENST00000599910		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000416136	ENST00000263381		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000416136	ENST00000599686		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000416136	ENST00000545156		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZNF564	chr19	12662144	-	WIZ	chr19	15538344	-
Frame-shit	ENST00000396976	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
5CDS-3UTR	ENST00000396976	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
Frame-shit	ENST00000396972	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
5CDS-3UTR	ENST00000396972	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
Frame-shit	ENST00000568898	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
5CDS-3UTR	ENST00000568898	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
Frame-shit	ENST00000562072	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
5CDS-3UTR	ENST00000562072	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
intron-3CDS	ENST00000563508	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
intron-3UTR	ENST00000563508	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03P-01A	ZSCAN29	chr15	43661794	-	MGMT	chr10	131506159	+
5CDS-5UTR	ENST00000287394	ENST00000446592		TCGA	LD	BRCA	TCGA-AO-A03T-01A	ATAD2	chr8	124368629	-	CCDC26	chr8	130365226	-
5UTR-5UTR	ENST00000521903	ENST00000446592		TCGA	LD	BRCA	TCGA-AO-A03T-01A	ATAD2	chr8	124368629	-	CCDC26	chr8	130365226	-
intron-5UTR	ENST00000534257	ENST00000446592		TCGA	LD	BRCA	TCGA-AO-A03T-01A	ATAD2	chr8	124368629	-	CCDC26	chr8	130365226	-
5CDS-intron	ENST00000378204	ENST00000441210		TCGA	LD	BRCA	TCGA-AO-A03T-01A	EXT1	chr8	119122324	-	TINAGL1	chr1	32048750	+
5CDS-intron	ENST00000378204	ENST00000457433		TCGA	LD	BRCA	TCGA-AO-A03T-01A	EXT1	chr8	119122324	-	TINAGL1	chr1	32048750	+
5CDS-intron	ENST00000378204	ENST00000271064		TCGA	LD	BRCA	TCGA-AO-A03T-01A	EXT1	chr8	119122324	-	TINAGL1	chr1	32048750	+
5CDS-intron	ENST00000378204	ENST00000537531		TCGA	LD	BRCA	TCGA-AO-A03T-01A	EXT1	chr8	119122324	-	TINAGL1	chr1	32048750	+
5CDS-3UTR	ENST00000378204	ENST00000481165		TCGA	LD	BRCA	TCGA-AO-A03T-01A	EXT1	chr8	119122324	-	TINAGL1	chr1	32048750	+
intron-3CDS	ENST00000545122	ENST00000373602		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000545122	ENST00000421922		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3UTR	ENST00000545122	ENST00000483009		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000309777	ENST00000373602		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000309777	ENST00000421922		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3UTR	ENST00000309777	ENST00000483009		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000373593	ENST00000373602		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000373593	ENST00000421922		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3UTR	ENST00000373593	ENST00000483009		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000344461	ENST00000373602		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000344461	ENST00000421922		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3UTR	ENST00000344461	ENST00000483009		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000485689	ENST00000373602		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3CDS	ENST00000485689	ENST00000421922		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
intron-3UTR	ENST00000485689	ENST00000483009		TCGA	LD	BRCA	TCGA-AO-A03T-01A	TMEM234	chr1	32680266	-	CCDC28B	chr1	32669480	+
Frame-shit	ENST00000444405	ENST00000539261		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000444405	ENST00000228938		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000246891	ENST00000539261		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000246891	ENST00000228938		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000507763	ENST00000539261		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000507763	ENST00000228938		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000507772	ENST00000539261		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000507772	ENST00000228938		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000505782	ENST00000539261		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
Frame-shit	ENST00000505782	ENST00000228938		TCGA	LD	BRCA	TCGA-AO-A03U-01B	CSN1S1	chr4	70801667	+	MGP	chr12	15035214	-
5CDS-5UTR	ENST00000283943	ENST00000347401		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000283943	ENST00000353578		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000283943	ENST00000295550		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000283943	ENST00000472056		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-intron	ENST00000283943	ENST00000409809		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000283943	ENST00000346358		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000283943	ENST00000392004		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000283943	ENST00000392003		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-intron	ENST00000283943	ENST00000473258		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000347401		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000353578		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000295550		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000472056		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-intron	ENST00000389045	ENST00000409809		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000346358		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000392004		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389045	ENST00000392003		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-intron	ENST00000389045	ENST00000473258		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000347401		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000353578		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000295550		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000472056		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-intron	ENST00000389044	ENST00000409809		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000346358		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000392004		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-5UTR	ENST00000389044	ENST00000392003		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
5CDS-intron	ENST00000389044	ENST00000473258		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000347401		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000353578		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000295550		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000472056		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-intron	ENST00000543084	ENST00000409809		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000346358		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000392004		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000543084	ENST00000392003		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-intron	ENST00000543084	ENST00000473258		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000347401		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000353578		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000295550		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000472056		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-intron	ENST00000409677	ENST00000409809		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000346358		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000392004		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-5UTR	ENST00000409677	ENST00000392003		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
intron-intron	ENST00000409677	ENST00000473258		TCGA	LD	BRCA	TCGA-AO-A03U-01B	TRIP12	chr2	230654327	-	COL6A3	chr2	238305490	-
Frame-shit	ENST00000539787	ENST00000293350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000539787	ENST00000540132		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000539787	ENST00000455361		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000539787	ENST00000433981		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
5CDS-intron	ENST00000539787	ENST00000598015		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000345358	ENST00000293350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000345358	ENST00000540132		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000345358	ENST00000455361		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000345358	ENST00000433981		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
5CDS-intron	ENST00000345358	ENST00000598015		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
3UTR-3CDS	ENST00000391871	ENST00000293350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
3UTR-3CDS	ENST00000391871	ENST00000540132		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
3UTR-3CDS	ENST00000391871	ENST00000455361		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
3UTR-3CDS	ENST00000391871	ENST00000433981		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
3UTR-intron	ENST00000391871	ENST00000598015		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000415969	ENST00000293350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000415969	ENST00000540132		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000415969	ENST00000455361		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000415969	ENST00000433981		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
5CDS-intron	ENST00000415969	ENST00000598015		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000354470	ENST00000293350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000354470	ENST00000540132		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000354470	ENST00000455361		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000354470	ENST00000433981		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
5CDS-intron	ENST00000354470	ENST00000598015		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000293288	ENST00000293350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000293288	ENST00000540132		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000293288	ENST00000455361		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
Frame-shit	ENST00000293288	ENST00000433981		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
5CDS-intron	ENST00000293288	ENST00000598015		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BAX	chr19	49459590	+	ALDH16A1	chr19	49964079	+
In-frame	ENST00000590333	ENST00000255631		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
In-frame	ENST00000590333	ENST00000433386		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
5CDS-intron	ENST00000590333	ENST00000376343		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
5CDS-intron	ENST00000590333	ENST00000587922		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
In-frame	ENST00000309383	ENST00000255631		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
In-frame	ENST00000309383	ENST00000433386		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
5CDS-intron	ENST00000309383	ENST00000376343		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
5CDS-intron	ENST00000309383	ENST00000587922		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
In-frame	ENST00000585418	ENST00000255631		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
In-frame	ENST00000585418	ENST00000433386		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
5CDS-intron	ENST00000585418	ENST00000376343		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
5CDS-intron	ENST00000585418	ENST00000587922		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-3CDS	ENST00000326848	ENST00000255631		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-3CDS	ENST00000326848	ENST00000433386		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-intron	ENST00000326848	ENST00000376343		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-intron	ENST00000326848	ENST00000587922		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-3CDS	ENST00000588584	ENST00000255631		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-3CDS	ENST00000588584	ENST00000433386		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-intron	ENST00000588584	ENST00000376343		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
intron-intron	ENST00000588584	ENST00000587922		TCGA	LD	BRCA	TCGA-AO-A03V-01A	BRSK1	chr19	55795946	+	HSPBP1	chr19	55777654	-
Frame-shit	ENST00000433211	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
5CDS-intron	ENST00000433211	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
In-frame	ENST00000373744	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
5CDS-intron	ENST00000373744	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
intron-3CDS	ENST00000545309	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
intron-intron	ENST00000545309	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
intron-3CDS	ENST00000373735	ENST00000306010		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
intron-intron	ENST00000373735	ENST00000462672		TCGA	LD	BRCA	TCGA-AO-A03V-01A	CTNNA3	chr10	68381450	-	MGMT	chr10	131334505	+
Frame-shit	ENST00000394903	ENST00000609923		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
5CDS-5UTR	ENST00000394903	ENST00000539557		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
5CDS-5UTR	ENST00000394903	ENST00000265870		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
Frame-shit	ENST00000338820	ENST00000609923		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
5CDS-5UTR	ENST00000338820	ENST00000539557		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
5CDS-5UTR	ENST00000338820	ENST00000265870		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
Frame-shit	ENST00000444643	ENST00000609923		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
5CDS-5UTR	ENST00000444643	ENST00000539557		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
5CDS-5UTR	ENST00000444643	ENST00000265870		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
intron-3CDS	ENST00000461919	ENST00000609923		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
intron-5UTR	ENST00000461919	ENST00000539557		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
intron-5UTR	ENST00000461919	ENST00000265870		TCGA	LD	BRCA	TCGA-AO-A03V-01A	DNAJB12	chr10	74114523	-	SLC25A16	chr10	70266475	-
Frame-shit	ENST00000369061	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369061	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369061	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369061	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000357555	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000357555	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000357555	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000357555	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000358487	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000358487	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000358487	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000358487	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000356226	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000356226	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000356226	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000356226	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369060	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369060	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369060	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369060	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369059	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369059	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369059	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369059	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000346997	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000346997	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000346997	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000346997	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000457416	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000457416	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000457416	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000457416	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000351936	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000351936	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000351936	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000351936	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000360144	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000360144	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000360144	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000360144	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369056	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000369056	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369056	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000369056	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-3CDS	ENST00000490349	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-3CDS	ENST00000490349	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-intron	ENST00000490349	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-intron	ENST00000490349	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-3CDS	ENST00000359354	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-3CDS	ENST00000359354	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-intron	ENST00000359354	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
intron-intron	ENST00000359354	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000478859	ENST00000433211		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000478859	ENST00000373744		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000478859	ENST00000545309		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
5CDS-intron	ENST00000478859	ENST00000373735		TCGA	LD	BRCA	TCGA-AO-A03V-01A	FGFR2	chr10	123263304	-	CTNNA3	chr10	68381542	-
Frame-shit	ENST00000334049	ENST00000359867		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000334049	ENST00000396832		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000334049	ENST00000400206		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000334049	ENST00000403904		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000334049	ENST00000413574		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000334049	ENST00000405675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
5CDS-intron	ENST00000334049	ENST00000498529		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000535121	ENST00000359867		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000535121	ENST00000396832		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000535121	ENST00000400206		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000535121	ENST00000403904		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000535121	ENST00000413574		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000535121	ENST00000405675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
5CDS-intron	ENST00000535121	ENST00000498529		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000269162	ENST00000359867		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000269162	ENST00000396832		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000269162	ENST00000400206		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000269162	ENST00000403904		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000269162	ENST00000413574		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000269162	ENST00000405675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
5CDS-intron	ENST00000269162	ENST00000498529		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000423027	ENST00000359867		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000423027	ENST00000396832		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000423027	ENST00000400206		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000423027	ENST00000403904		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000423027	ENST00000413574		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000423027	ENST00000405675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
5CDS-intron	ENST00000423027	ENST00000498529		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-3CDS	ENST00000590972	ENST00000359867		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-3CDS	ENST00000590972	ENST00000396832		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-3CDS	ENST00000590972	ENST00000400206		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-3CDS	ENST00000590972	ENST00000403904		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-3CDS	ENST00000590972	ENST00000413574		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-3CDS	ENST00000590972	ENST00000405675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
3UTR-intron	ENST00000590972	ENST00000498529		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000602628	ENST00000359867		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000602628	ENST00000396832		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000602628	ENST00000400206		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000602628	ENST00000403904		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000602628	ENST00000413574		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000602628	ENST00000405675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
intron-intron	ENST00000602628	ENST00000498529		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GNAL	chr18	11753944	+	CSNK1E	chr22	38699253	-
5UTR-3CDS	ENST00000319838	ENST00000298048		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000538311		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000536987		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000536860		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000545008		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000536329		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000541717		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000319838	ENST00000543751		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-intron	ENST00000319838	ENST00000487398		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000298048		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000538311		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000536987		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000536860		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000545008		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000536329		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000541717		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
Frame-shit	ENST00000438013	ENST00000543751		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5CDS-intron	ENST00000438013	ENST00000487398		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000298048		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000538311		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000536987		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000536860		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000545008		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000536329		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000541717		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-3CDS	ENST00000403859	ENST00000543751		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5UTR-intron	ENST00000403859	ENST00000487398		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000298048		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000538311		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000536987		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000536860		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000545008		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000536329		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000541717		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000407714	ENST00000543751		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-intron	ENST00000407714	ENST00000487398		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000298048		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000538311		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000536987		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000536860		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000545008		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000536329		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000541717		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-3CDS	ENST00000430267	ENST00000543751		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
intron-intron	ENST00000430267	ENST00000487398		TCGA	LD	BRCA	TCGA-AO-A03V-01A	GPR35	chr2	241558448	+	MELK	chr9	36642994	+
5CDS-5UTR	ENST00000255631	ENST00000316763		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000377011		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000599538		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000443401		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000601341		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000594948		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000601912		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000594092		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000593919		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000255631	ENST00000424804		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000316763		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000377011		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000599538		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000443401		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000601341		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000594948		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000601912		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000594092		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000593919		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000433386	ENST00000424804		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000316763		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000377011		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000599538		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000443401		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000601341		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000594948		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000601912		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000594092		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000593919		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
intron-5UTR	ENST00000376343	ENST00000424804		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000316763		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000377011		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000599538		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000443401		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000601341		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000594948		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000601912		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000594092		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000593919		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
5CDS-5UTR	ENST00000587922	ENST00000424804		TCGA	LD	BRCA	TCGA-AO-A03V-01A	HSPBP1	chr19	55785766	-	VRK3	chr19	50523904	-
In-frame	ENST00000306010	ENST00000392225		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
In-frame	ENST00000306010	ENST00000310123		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
5CDS-5UTR	ENST00000306010	ENST00000493050		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
5CDS-5UTR	ENST00000306010	ENST00000591633		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
intron-3CDS	ENST00000462672	ENST00000392225		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
intron-3CDS	ENST00000462672	ENST00000310123		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
intron-5UTR	ENST00000462672	ENST00000493050		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
intron-5UTR	ENST00000462672	ENST00000591633		TCGA	LD	BRCA	TCGA-AO-A03V-01A	MGMT	chr10	131334641	+	LGI4	chr19	35622764	-
3UTR-3CDS	ENST00000494222	ENST00000324675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PLEKHA1	chr10	124134322	+	FAM187B	chr19	35716115	-
5UTR-3CDS	ENST00000368990	ENST00000324675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PLEKHA1	chr10	124134322	+	FAM187B	chr19	35716115	-
5UTR-3CDS	ENST00000368988	ENST00000324675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PLEKHA1	chr10	124134322	+	FAM187B	chr19	35716115	-
5UTR-3CDS	ENST00000368989	ENST00000324675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PLEKHA1	chr10	124134322	+	FAM187B	chr19	35716115	-
intron-3CDS	ENST00000538022	ENST00000324675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PLEKHA1	chr10	124134322	+	FAM187B	chr19	35716115	-
intron-3CDS	ENST00000433307	ENST00000324675		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PLEKHA1	chr10	124134322	+	FAM187B	chr19	35716115	-
In-frame	ENST00000396504	ENST00000325157		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
5CDS-intron	ENST00000396504	ENST00000490326		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
In-frame	ENST00000355209	ENST00000325157		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
5CDS-intron	ENST00000355209	ENST00000490326		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
In-frame	ENST00000337566	ENST00000325157		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
5CDS-intron	ENST00000337566	ENST00000490326		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
Frame-shit	ENST00000407461	ENST00000325157		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
5CDS-intron	ENST00000407461	ENST00000490326		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
intron-3CDS	ENST00000420561	ENST00000325157		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
intron-intron	ENST00000420561	ENST00000490326		TCGA	LD	BRCA	TCGA-AO-A03V-01A	POLR3H	chr22	41936703	-	ENTHD1	chr22	40258012	-
5UTR-3CDS	ENST00000412770	ENST00000415300		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
5UTR-3CDS	ENST00000412770	ENST00000448930		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
5UTR-3CDS	ENST00000412770	ENST00000302804		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
5UTR-3CDS	ENST00000412770	ENST00000599062		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
5UTR-3CDS	ENST00000412770	ENST00000598785		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
intron-3CDS	ENST00000587283	ENST00000415300		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
intron-3CDS	ENST00000587283	ENST00000448930		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
intron-3CDS	ENST00000587283	ENST00000302804		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
intron-3CDS	ENST00000587283	ENST00000599062		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
intron-3CDS	ENST00000587283	ENST00000598785		TCGA	LD	BRCA	TCGA-AO-A03V-01A	PPP6R1	chr19	55769803	-	AURKC	chr19	57743401	+
3UTR-3CDS	ENST00000244040	ENST00000390649		TCGA	LD	BRCA	TCGA-AO-A03V-01A	RAB22A	chr20	56934791	+	NLRP5	chr19	56515102	+
intron-3CDS	ENST00000488949	ENST00000390649		TCGA	LD	BRCA	TCGA-AO-A03V-01A	RAB22A	chr20	56934791	+	NLRP5	chr19	56515102	+
5UTR-3CDS	ENST00000361781	ENST00000402038		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
5UTR-intron	ENST00000361781	ENST00000492350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
intron-3CDS	ENST00000429490	ENST00000402038		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
intron-intron	ENST00000429490	ENST00000492350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
intron-3CDS	ENST00000492601	ENST00000402038		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
intron-intron	ENST00000492601	ENST00000492350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
intron-3CDS	ENST00000361543	ENST00000402038		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
intron-intron	ENST00000361543	ENST00000492350		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SGMS1	chr10	52193236	-	PARG	chr10	51093341	-
Frame-shit	ENST00000380516	ENST00000369043		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000380516	ENST00000535655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
In-frame	ENST00000380516	ENST00000224652		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000380516	ENST00000369040		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
In-frame	ENST00000380516	ENST00000540606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000380516	ENST00000543447		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5CDS-intron	ENST00000380516	ENST00000481784		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000536328	ENST00000369043		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000536328	ENST00000535655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000536328	ENST00000224652		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000536328	ENST00000369040		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000536328	ENST00000540606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000536328	ENST00000543447		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-intron	ENST00000536328	ENST00000481784		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000557950	ENST00000369043		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000557950	ENST00000535655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000557950	ENST00000224652		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000557950	ENST00000369040		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000557950	ENST00000540606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000557950	ENST00000543447		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-intron	ENST00000557950	ENST00000481784		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SLTM	chr15	59204762	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000353788	ENST00000376279		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000353788	ENST00000376286		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000353788	ENST00000376285		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-intron	ENST00000353788	ENST00000485946		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000396330	ENST00000376279		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000396330	ENST00000376286		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000396330	ENST00000376285		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-intron	ENST00000396330	ENST00000485946		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000345957	ENST00000376279		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000345957	ENST00000376286		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-3CDS	ENST00000345957	ENST00000376285		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
5UTR-intron	ENST00000345957	ENST00000485946		TCGA	LD	BRCA	TCGA-AO-A03V-01A	SNX16	chr8	82754357	-	PCCA	chr13	100992411	+
intron-3CDS	ENST00000343666	ENST00000389834		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000343666	ENST00000448392		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000343666	ENST00000307216		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000343666	ENST00000568432		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000537254	ENST00000389834		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000537254	ENST00000448392		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000537254	ENST00000307216		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000537254	ENST00000568432		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TMEM203	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000321773	ENST00000389834		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000321773	ENST00000448392		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000321773	ENST00000307216		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000321773	ENST00000568432		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000409012	ENST00000389834		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000409012	ENST00000448392		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000409012	ENST00000307216		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-intron	ENST00000409012	ENST00000568432		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
5UTR-3CDS	ENST00000541945	ENST00000389834		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
5UTR-3CDS	ENST00000541945	ENST00000448392		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
5UTR-intron	ENST00000541945	ENST00000307216		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
5UTR-intron	ENST00000541945	ENST00000568432		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TPRN	chr9	140098556	-	TMEM87A	chr15	42503947	-
intron-3CDS	ENST00000537971	ENST00000335762		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000537971	ENST00000399655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000480911		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399644		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000344100		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399638		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399629		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399597		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000327702		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399621		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399649		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399637		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000402845		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399591		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399641		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000347598		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399595		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399601		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399603		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399634		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000399617		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000406454		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000537971	ENST00000491104		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000011898	ENST00000335762		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000011898	ENST00000399655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000480911		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399644		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000344100		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399638		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399629		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399597		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000327702		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399621		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399649		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399637		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000402845		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399591		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399641		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000347598		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399595		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399601		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399603		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399634		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000399617		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000406454		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000011898	ENST00000491104		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000407263	ENST00000335762		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000407263	ENST00000399655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000480911		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399644		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000344100		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399638		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399629		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399597		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000327702		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399621		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399649		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399637		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000402845		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399591		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399641		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000347598		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399595		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399601		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399603		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399634		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000399617		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000406454		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000407263	ENST00000491104		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000492305	ENST00000335762		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-3CDS	ENST00000492305	ENST00000399655		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000480911		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399644		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000344100		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399638		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399629		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399597		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000327702		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399621		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399649		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399637		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000402845		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399591		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399641		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000347598		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399606		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399595		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399601		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399603		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399634		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000399617		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000406454		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
intron-intron	ENST00000492305	ENST00000491104		TCGA	LD	BRCA	TCGA-AO-A03V-01A	TSPAN9	chr12	3324521	+	CACNA1C	chr12	2773991	+
In-frame	ENST00000396787	ENST00000341772		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
5CDS-intron	ENST00000396787	ENST00000482831		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
In-frame	ENST00000378495	ENST00000341772		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
5CDS-intron	ENST00000378495	ENST00000482831		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
In-frame	ENST00000378496	ENST00000341772		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
5CDS-intron	ENST00000378496	ENST00000482831		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
intron-3CDS	ENST00000481299	ENST00000341772		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
intron-intron	ENST00000481299	ENST00000482831		TCGA	LD	BRCA	TCGA-AO-A03V-01A	UNC13B	chr9	35162302	+	DNER	chr2	230282946	-
5UTR-3CDS	ENST00000391788	ENST00000196548		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
5UTR-3CDS	ENST00000391788	ENST00000608843		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
5UTR-3CDS	ENST00000360465	ENST00000196548		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
5UTR-3CDS	ENST00000360465	ENST00000608843		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000531472	ENST00000196548		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000531472	ENST00000608843		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000598192	ENST00000196548		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000598192	ENST00000608843		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000594530	ENST00000196548		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000594530	ENST00000608843		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF528	chr19	52901157	+	ZNF8	chr19	58805464	+
intron-3CDS	ENST00000599802	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000599802	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000599802	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000599802	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000599802	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000599802	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3UTR	ENST00000599802	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000391702	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000391702	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000391702	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000391702	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000391702	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000391702	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3UTR	ENST00000391702	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598885	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598885	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598885	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598885	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598885	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598885	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
5CDS-3UTR	ENST00000598885	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598183	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598183	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598183	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598183	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598183	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
In-frame	ENST00000598183	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
5CDS-3UTR	ENST00000598183	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396154	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396154	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396154	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396154	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396154	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396154	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3UTR	ENST00000396154	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396150	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396150	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396150	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396150	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396150	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000396150	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
intron-3UTR	ENST00000396150	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF586	chr19	58301768	+	SRC	chr20	36028518	+
Frame-shit	ENST00000316462	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
Frame-shit	ENST00000316462	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
Frame-shit	ENST00000316462	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
Frame-shit	ENST00000316462	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
Frame-shit	ENST00000316462	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
Frame-shit	ENST00000316462	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
5CDS-3UTR	ENST00000316462	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000442832	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000442832	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000442832	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000442832	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000442832	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000442832	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3UTR	ENST00000442832	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000594901	ENST00000445403		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000594901	ENST00000373578		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000594901	ENST00000360723		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000594901	ENST00000358208		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000594901	ENST00000373567		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3CDS	ENST00000594901	ENST00000373558		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
intron-3UTR	ENST00000594901	ENST00000477066		TCGA	LD	BRCA	TCGA-AO-A03V-01A	ZNF587B	chr19	58331313	+	SRC	chr20	36028518	+
5CDS-intron	ENST00000539605	ENST00000315585		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000266880		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000443047		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000450056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000537522		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000541837		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000432561		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000539605	ENST00000541341		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000315585		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000266880		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000443047		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000450056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000537522		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000541837		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000432561		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000357997	ENST00000541341		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000315585		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000266880		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000443047		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000450056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000537522		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000541837		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000432561		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542282	ENST00000541341		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000315585		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000266880		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000443047		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000450056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000537522		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000541837		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000432561		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542657	ENST00000541341		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000315585		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000266880		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000443047		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000450056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000537522		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000541837		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000432561		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
intron-intron	ENST00000542374	ENST00000541341		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000315585		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000266880		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000443047		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000450056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000537522		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000541837		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000432561		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
5CDS-intron	ENST00000337516	ENST00000541341		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	ANKLE2	chr12	133324418	-	CHFR	chr12	133409823	-
Frame-shit	ENST00000266383	ENST00000540180		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
Frame-shit	ENST00000266383	ENST00000422000		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
5CDS-3UTR	ENST00000266383	ENST00000540344		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
5CDS-3UTR	ENST00000266383	ENST00000239830		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
5CDS-3UTR	ENST00000266383	ENST00000412006		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
intron-3CDS	ENST00000544638	ENST00000540180		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
intron-3CDS	ENST00000544638	ENST00000422000		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
intron-3UTR	ENST00000544638	ENST00000540344		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
intron-3UTR	ENST00000544638	ENST00000239830		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
intron-3UTR	ENST00000544638	ENST00000412006		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	527660	+
5CDS-intron	ENST00000377022	ENST00000412962		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	CASZ1	chr1	10753931	-	CROCCP2	chr1	16969640	-
5CDS-intron	ENST00000344008	ENST00000412962		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	CASZ1	chr1	10753931	-	CROCCP2	chr1	16969640	-
5UTR-intron	ENST00000478728	ENST00000412962		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	CASZ1	chr1	10753931	-	CROCCP2	chr1	16969640	-
5CDS-5UTR	ENST00000264956	ENST00000010404		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000264956	ENST00000396210		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000264956	ENST00000535309		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000264956	ENST00000540056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000264956	ENST00000396209		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000264956	ENST00000396207		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-intron	ENST00000264956	ENST00000359720		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000382674	ENST00000010404		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000382674	ENST00000396210		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000382674	ENST00000535309		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000382674	ENST00000540056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000382674	ENST00000396209		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000382674	ENST00000396207		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
5CDS-intron	ENST00000382674	ENST00000359720		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000509451	ENST00000010404		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000509451	ENST00000396210		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000509451	ENST00000535309		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000509451	ENST00000540056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000509451	ENST00000396209		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000509451	ENST00000396207		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-intron	ENST00000509451	ENST00000359720		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000515113	ENST00000010404		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000515113	ENST00000396210		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000515113	ENST00000535309		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000515113	ENST00000540056		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000515113	ENST00000396209		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-5UTR	ENST00000515113	ENST00000396207		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-intron	ENST00000515113	ENST00000359720		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	EVC	chr4	5785491	+	MGST1	chr12	16507165	+
intron-3CDS	ENST00000538689	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000538689	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000220584	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000220584	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000220584	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000220584	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000220584	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000446331	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000443614	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000443614	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000443614	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000443614	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000443614	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525900	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
5UTR-3CDS	ENST00000528812	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
5UTR-3CDS	ENST00000528812	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
5UTR-3CDS	ENST00000528812	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
5UTR-3CDS	ENST00000528812	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
5UTR-3CDS	ENST00000528812	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000530664	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000528643	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000436750		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000455213		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000403422		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000528323		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
intron-3CDS	ENST00000525777	ENST00000284503		TCGA	LD	BRCA	TCGA-AO-A0J2-01A	FDFT1	chr8	11661027	+	NEIL2	chr8	11640712	+
Frame-shit	ENST00000445912	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000252034	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000358929	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000320492	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000414324	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000380562	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000380575	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000380584	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000458204	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000357036	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000429192	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000380553	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000380576	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
Frame-shit	ENST00000320399	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
intron-3CDS	ENST00000466878	ENST00000311506		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	ELN	chr7	73442599	+	METTL2A	chr17	60517978	+
5UTR-5UTR	ENST00000574590	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
5UTR-5UTR	ENST00000574590	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
5UTR-intron	ENST00000574590	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
5UTR-intron	ENST00000574590	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
5UTR-intron	ENST00000574590	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000575318	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000575318	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000575318	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000575318	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000575318	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000572904	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000572904	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000572904	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000572904	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000572904	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000262419	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000262419	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000262419	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000262419	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000262419	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000432791	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000432791	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000432791	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000432791	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000432791	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000393476	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000393476	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000393476	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000393476	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000393476	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000576248	ENST00000398645		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-5UTR	ENST00000576248	ENST00000529006		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000576248	ENST00000526258		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000576248	ENST00000308783		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
intron-intron	ENST00000576248	ENST00000530342		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KANSL1	chr17	44301037	-	KDM2A	chr11	66888705	+
Frame-shit	ENST00000398645	ENST00000393799		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000530427		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000393800		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000534534		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000524845		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000265637		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000524904		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000393801		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000265636		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000529710		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000398645	ENST00000527403		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
Frame-shit	ENST00000529006	ENST00000393799		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000530427		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000393800		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000534534		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000524845		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000265637		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000524904		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000393801		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000265636		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000529710		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
5CDS-intron	ENST00000529006	ENST00000527403		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-3CDS	ENST00000526258	ENST00000393799		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000530427		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000393800		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000534534		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000524845		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000265637		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000524904		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000393801		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000265636		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000529710		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000526258	ENST00000527403		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-3CDS	ENST00000308783	ENST00000393799		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000530427		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000393800		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000534534		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000524845		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000265637		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000524904		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000393801		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000265636		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000529710		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000308783	ENST00000527403		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-3CDS	ENST00000530342	ENST00000393799		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000530427		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000393800		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000534534		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000524845		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000265637		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000524904		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000393801		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000265636		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000529710		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-intron	ENST00000530342	ENST00000527403		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KDM2A	chr11	66888829	+	PPP6R3	chr11	68363565	+
intron-3CDS	ENST00000392272	ENST00000392129		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000392272	ENST00000367881		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000392272	ENST00000580248		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000392272	ENST00000464650		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000368173	ENST00000392129		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000368173	ENST00000367881		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000368173	ENST00000580248		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000368173	ENST00000464650		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000360089	ENST00000392129		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000360089	ENST00000367881		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000360089	ENST00000580248		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000360089	ENST00000464650		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000359209	ENST00000392129		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000359209	ENST00000367881		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000359209	ENST00000580248		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000359209	ENST00000464650		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000416935	ENST00000392129		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-3CDS	ENST00000416935	ENST00000367881		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000416935	ENST00000580248		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
intron-5UTR	ENST00000416935	ENST00000464650		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
3UTR-3CDS	ENST00000368172	ENST00000392129		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
3UTR-3CDS	ENST00000368172	ENST00000367881		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
3UTR-5UTR	ENST00000368172	ENST00000580248		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
3UTR-5UTR	ENST00000368172	ENST00000464650		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	KIRREL	chr1	158067873	+	TMCO1	chr1	165737506	-
In-frame	ENST00000530878	ENST00000546159		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000530878	ENST00000486375		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000530878	ENST00000367521		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000530878	ENST00000361927		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000530878	ENST00000367520		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
In-frame	ENST00000361897	ENST00000546159		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000361897	ENST00000486375		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000361897	ENST00000367521		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000361897	ENST00000361927		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
5CDS-intron	ENST00000361897	ENST00000367520		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-3CDS	ENST00000493151	ENST00000546159		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000493151	ENST00000486375		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000493151	ENST00000367521		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000493151	ENST00000361927		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000493151	ENST00000367520		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-3CDS	ENST00000454693	ENST00000546159		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000454693	ENST00000486375		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000454693	ENST00000367521		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000454693	ENST00000361927		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-intron	ENST00000454693	ENST00000367520		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	NOS1AP	chr1	162124266	+	COLGALT2	chr1	183913457	-
intron-5UTR	ENST00000282369	ENST00000511181		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000282369	ENST00000261416		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000282369	ENST00000513539		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000282369	ENST00000509579		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5CDS-5UTR	ENST00000513154	ENST00000511181		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5CDS-5UTR	ENST00000513154	ENST00000261416		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5CDS-intron	ENST00000513154	ENST00000513539		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5CDS-intron	ENST00000513154	ENST00000509579		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000514154	ENST00000511181		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000514154	ENST00000261416		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000514154	ENST00000513539		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000514154	ENST00000509579		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5UTR-5UTR	ENST00000515104	ENST00000511181		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5UTR-5UTR	ENST00000515104	ENST00000261416		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5UTR-intron	ENST00000515104	ENST00000513539		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5UTR-intron	ENST00000515104	ENST00000509579		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000379618	ENST00000511181		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000379618	ENST00000261416		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000379618	ENST00000513539		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000379618	ENST00000509579		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000379617	ENST00000511181		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-5UTR	ENST00000379617	ENST00000261416		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000379617	ENST00000513539		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
intron-intron	ENST00000379617	ENST00000509579		TCGA	LD	BRCA	TCGA-AO-A0J3-01A	TRIM36	chr5	114505305	-	HEXB	chr5	73985153	+
5CDS-intron	ENST00000376170	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376170	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376170	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376170	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376170	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376170	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376170	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000359188	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376142	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376139	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376160	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376166	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376138	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000355394	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000490841	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376137	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000346832	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000536334	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376134	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
5CDS-intron	ENST00000376140	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000277657		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000362006		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000545067		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000535327		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000539197		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000537047		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-intron	ENST00000473481	ENST00000489718		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	ABI1	chr10	27057781	-	CCDC7	chr10	33067905	+
intron-3CDS	ENST00000599564	ENST00000336838		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000599564	ENST00000263630		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000599564	ENST00000436346		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000599564	ENST00000413716		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-intron	ENST00000599564	ENST00000422883		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-intron	ENST00000599564	ENST00000471947		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000317991	ENST00000336838		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000317991	ENST00000263630		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000317991	ENST00000436346		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000317991	ENST00000413716		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5CDS-intron	ENST00000317991	ENST00000422883		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5CDS-intron	ENST00000317991	ENST00000471947		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-3CDS	ENST00000504615	ENST00000336838		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-3CDS	ENST00000504615	ENST00000263630		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-3CDS	ENST00000504615	ENST00000436346		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-3CDS	ENST00000504615	ENST00000413716		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-intron	ENST00000504615	ENST00000422883		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-intron	ENST00000504615	ENST00000471947		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000411896	ENST00000336838		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000411896	ENST00000263630		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000411896	ENST00000436346		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000411896	ENST00000413716		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5CDS-intron	ENST00000411896	ENST00000422883		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5CDS-intron	ENST00000411896	ENST00000471947		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000424536	ENST00000336838		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000424536	ENST00000263630		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000424536	ENST00000436346		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
In-frame	ENST00000424536	ENST00000413716		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5CDS-intron	ENST00000424536	ENST00000422883		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5CDS-intron	ENST00000424536	ENST00000471947		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000598073	ENST00000336838		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000598073	ENST00000263630		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000598073	ENST00000436346		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-3CDS	ENST00000598073	ENST00000413716		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-intron	ENST00000598073	ENST00000422883		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
intron-intron	ENST00000598073	ENST00000471947		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	GRAMD1A	chr19	35491390	+	CCDC88A	chr2	55616022	-
5UTR-3CDS	ENST00000196169	ENST00000400324		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000196169	ENST00000400330		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000196169	ENST00000400319		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000196169	ENST00000400320		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000196169	ENST00000377908		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000196169	ENST00000267215		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-5UTR	ENST00000196169	ENST00000465066		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377894	ENST00000400324		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377894	ENST00000400330		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377894	ENST00000400319		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377894	ENST00000400320		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377894	ENST00000377908		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377894	ENST00000267215		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-5UTR	ENST00000377894	ENST00000465066		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
In-frame	ENST00000535286	ENST00000400324		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
In-frame	ENST00000535286	ENST00000400330		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
In-frame	ENST00000535286	ENST00000400319		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
In-frame	ENST00000535286	ENST00000400320		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
In-frame	ENST00000535286	ENST00000377908		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
In-frame	ENST00000535286	ENST00000267215		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5CDS-5UTR	ENST00000535286	ENST00000465066		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377881	ENST00000400324		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377881	ENST00000400330		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377881	ENST00000400319		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377881	ENST00000400320		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377881	ENST00000377908		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-3CDS	ENST00000377881	ENST00000267215		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
5UTR-5UTR	ENST00000377881	ENST00000465066		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-3CDS	ENST00000463109	ENST00000400324		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-3CDS	ENST00000463109	ENST00000400330		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-3CDS	ENST00000463109	ENST00000400319		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-3CDS	ENST00000463109	ENST00000400320		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-3CDS	ENST00000463109	ENST00000377908		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-3CDS	ENST00000463109	ENST00000267215		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
3UTR-5UTR	ENST00000463109	ENST00000465066		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	TDRD3	chr13	61018882	+	DIAPH3	chr13	60385057	-
Frame-shit	ENST00000246548	ENST00000244137		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000246548	ENST00000397032		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
Frame-shit	ENST00000246548	ENST00000436370		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
5CDS-intron	ENST00000246548	ENST00000591968		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000439527	ENST00000244137		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000439527	ENST00000397032		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000439527	ENST00000436370		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-intron	ENST00000439527	ENST00000591968		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000592791	ENST00000244137		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000592791	ENST00000397032		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000592791	ENST00000436370		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-intron	ENST00000592791	ENST00000591968		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000588585	ENST00000244137		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000588585	ENST00000397032		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000588585	ENST00000436370		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-intron	ENST00000588585	ENST00000591968		TCGA	LD	BRCA	TCGA-AO-A0J4-01A	UBA2	chr19	34919475	+	PEPD	chr19	33904549	-
intron-5UTR	ENST00000538928	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
intron-intron	ENST00000538928	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
intron-intron	ENST00000538928	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
intron-5UTR	ENST00000584529	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
intron-intron	ENST00000584529	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
intron-intron	ENST00000584529	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000290866	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000290866	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000290866	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000428043	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000428043	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000428043	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000490216	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000490216	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000490216	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000577647	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000577647	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000577647	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000290863	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000290863	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000290863	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000421982	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000421982	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000421982	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-5UTR	ENST00000413513	ENST00000225726		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000413513	ENST00000403162		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000413513	ENST00000582252		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ACE	chr17	61570941	+	CCDC47	chr17	61850987	-
5CDS-intron	ENST00000448504	ENST00000318698		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
5CDS-intron	ENST00000448504	ENST00000566473		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
5CDS-intron	ENST00000448504	ENST00000574292		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
5CDS-intron	ENST00000452479	ENST00000318698		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
5CDS-intron	ENST00000452479	ENST00000566473		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
5CDS-intron	ENST00000452479	ENST00000574292		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
3UTR-intron	ENST00000582154	ENST00000318698		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
3UTR-intron	ENST00000582154	ENST00000566473		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
3UTR-intron	ENST00000582154	ENST00000574292		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66347827	+	ANKFN1	chr17	54569548	+
intron-3CDS	ENST00000448504	ENST00000335221		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000448504	ENST00000321892		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000448504	ENST00000306378		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000448504	ENST00000424123		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-intron	ENST00000448504	ENST00000577770		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
5UTR-3CDS	ENST00000452479	ENST00000335221		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
5UTR-3CDS	ENST00000452479	ENST00000321892		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
5UTR-3CDS	ENST00000452479	ENST00000306378		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
5UTR-3CDS	ENST00000452479	ENST00000424123		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
5UTR-intron	ENST00000452479	ENST00000577770		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000582154	ENST00000335221		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000582154	ENST00000321892		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000582154	ENST00000306378		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000582154	ENST00000424123		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-intron	ENST00000582154	ENST00000577770		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	ARSG	chr17	66287709	+	BPTF	chr17	65899905	+
intron-3CDS	ENST00000488813	ENST00000317534		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
intron-5UTR	ENST00000488813	ENST00000467084		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
intron-3CDS	ENST00000395879	ENST00000317534		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
intron-5UTR	ENST00000395879	ENST00000467084		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
5UTR-3CDS	ENST00000395880	ENST00000317534		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
5UTR-5UTR	ENST00000395880	ENST00000467084		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
5UTR-3CDS	ENST00000310564	ENST00000317534		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
5UTR-5UTR	ENST00000310564	ENST00000467084		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
5UTR-3CDS	ENST00000223336	ENST00000317534		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
5UTR-5UTR	ENST00000223336	ENST00000467084		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	COA1	chr7	43769028	-	MRPS24	chr7	43908673	-
Frame-shit	ENST00000519824	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519824	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519824	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000519824	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
In-frame	ENST00000522746	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
In-frame	ENST00000522746	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
In-frame	ENST00000522746	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000522746	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000523509	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000523509	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000523509	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000523509	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
In-frame	ENST00000401979	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
In-frame	ENST00000401979	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
In-frame	ENST00000401979	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000401979	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519110	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519110	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519110	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000519110	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-3CDS	ENST00000522250	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-3CDS	ENST00000522250	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-3CDS	ENST00000522250	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-intron	ENST00000522250	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000517654	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000517654	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000517654	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000517654	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519540	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519540	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000519540	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5CDS-intron	ENST00000519540	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-3CDS	ENST00000522941	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-3CDS	ENST00000522941	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-3CDS	ENST00000522941	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
5UTR-intron	ENST00000522941	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
intron-3CDS	ENST00000518879	ENST00000406337		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
intron-3CDS	ENST00000518879	ENST00000265713		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
intron-3CDS	ENST00000518879	ENST00000396930		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
intron-intron	ENST00000518879	ENST00000485568		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	FAM49B	chr8	130883621	-	KAT6A	chr8	41792385	-
Frame-shit	ENST00000253247	ENST00000323777		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	NOL11	chr17	65739702	+	HSF5	chr17	56499791	-
intron-3CDS	ENST00000581966	ENST00000323777		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	NOL11	chr17	65739702	+	HSF5	chr17	56499791	-
Frame-shit	ENST00000535137	ENST00000323777		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	NOL11	chr17	65739702	+	HSF5	chr17	56499791	-
Frame-shit	ENST00000371142	ENST00000357947		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	TM9SF3	chr10	98321735	-	TLL2	chr10	98205925	-
5CDS-5UTR	ENST00000371142	ENST00000469598		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	TM9SF3	chr10	98321735	-	TLL2	chr10	98205925	-
intron-3CDS	ENST00000490192	ENST00000357947		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	TM9SF3	chr10	98321735	-	TLL2	chr10	98205925	-
intron-5UTR	ENST00000490192	ENST00000469598		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	TM9SF3	chr10	98321735	-	TLL2	chr10	98205925	-
Frame-shit	ENST00000300896	ENST00000583539		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
Frame-shit	ENST00000300896	ENST00000337432		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000300896	ENST00000487921		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000300896	ENST00000421782		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000592339	ENST00000583539		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000592339	ENST00000337432		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000592339	ENST00000487921		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000592339	ENST00000421782		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
Frame-shit	ENST00000393003	ENST00000583539		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
Frame-shit	ENST00000393003	ENST00000337432		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000393003	ENST00000487921		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000393003	ENST00000421782		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000586881	ENST00000583539		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000586881	ENST00000337432		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000586881	ENST00000487921		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000586881	ENST00000421782		TCGA	LD	BRCA	TCGA-AO-A0J5-01A	USP32	chr17	58469243	-	RAD51C	chr17	56772292	+
In-frame	ENST00000433197	ENST00000566501		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
In-frame	ENST00000433197	ENST00000331666		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
In-frame	ENST00000433197	ENST00000395587		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
In-frame	ENST00000433197	ENST00000564243		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
In-frame	ENST00000433197	ENST00000566866		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
5CDS-3UTR	ENST00000433197	ENST00000565099		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000577567	ENST00000566501		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000577567	ENST00000331666		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000577567	ENST00000395587		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000577567	ENST00000564243		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000577567	ENST00000566866		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3UTR	ENST00000577567	ENST00000565099		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000606895	ENST00000566501		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000606895	ENST00000331666		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000606895	ENST00000395587		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000606895	ENST00000564243		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3CDS	ENST00000606895	ENST00000566866		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
intron-3UTR	ENST00000606895	ENST00000565099		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	ERN1	chr17	62144031	-	EIF3C	chr16	28734485	+
In-frame	ENST00000306627	ENST00000397977		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
5CDS-intron	ENST00000306627	ENST00000521758		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
In-frame	ENST00000346855	ENST00000397977		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
5CDS-intron	ENST00000346855	ENST00000521758		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
In-frame	ENST00000467766	ENST00000397977		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
5CDS-intron	ENST00000467766	ENST00000521758		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
In-frame	ENST00000424381	ENST00000397977		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
5CDS-intron	ENST00000424381	ENST00000521758		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
3UTR-3CDS	ENST00000475680	ENST00000397977		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
3UTR-intron	ENST00000475680	ENST00000521758		TCGA	LD	BRCA	TCGA-AO-A0J7-01A	UBE2E1	chr3	23929190	+	INTS10	chr8	19687917	+
5UTR-3UTR	ENST00000261681	ENST00000429408		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000426835		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000446159		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000414797		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000422093		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000451809		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000448195		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000424477		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000261681	ENST00000448636		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000429408		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000426835		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000446159		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000414797		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000422093		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000451809		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000448195		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000424477		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000555925	ENST00000448636		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000429408		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000426835		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000446159		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000414797		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000422093		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000451809		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000448195		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000424477		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
3UTR-3UTR	ENST00000554911	ENST00000448636		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000429408		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000426835		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000446159		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000414797		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000422093		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000451809		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000448195		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000424477		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5UTR-3UTR	ENST00000556345	ENST00000448636		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	MPP5	chr14	67708250	+	MAGI2-AS3	chr7	79088163	+
5CDS-5UTR	ENST00000296597	ENST00000504022		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
5CDS-5UTR	ENST00000296597	ENST00000274361		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
5CDS-5UTR	ENST00000296597	ENST00000506364		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
5CDS-5UTR	ENST00000511107	ENST00000504022		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
5CDS-5UTR	ENST00000511107	ENST00000274361		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
5CDS-5UTR	ENST00000511107	ENST00000506364		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
intron-5UTR	ENST00000512623	ENST00000504022		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
intron-5UTR	ENST00000512623	ENST00000274361		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
intron-5UTR	ENST00000512623	ENST00000506364		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	NDUFAF2	chr5	60241209	+	ANKRD31	chr5	74464946	-
Frame-shit	ENST00000393877	ENST00000533211		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
Frame-shit	ENST00000393877	ENST00000309996		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
Frame-shit	ENST00000393877	ENST00000529997		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
Frame-shit	ENST00000308022	ENST00000533211		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
Frame-shit	ENST00000308022	ENST00000309996		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
Frame-shit	ENST00000308022	ENST00000529997		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
intron-3CDS	ENST00000541059	ENST00000533211		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
intron-3CDS	ENST00000541059	ENST00000309996		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
intron-3CDS	ENST00000541059	ENST00000529997		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
intron-3CDS	ENST00000452789	ENST00000533211		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
intron-3CDS	ENST00000452789	ENST00000309996		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
intron-3CDS	ENST00000452789	ENST00000529997		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TMEM134	chr11	67234783	-	SPTBN2	chr11	66466553	-
Frame-shit	ENST00000267622	ENST00000261835		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92461696	-	CYP46A1	chr14	100165803	+
5CDS-5UTR	ENST00000267622	ENST00000423126		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92461696	-	CYP46A1	chr14	100165803	+
5CDS-intron	ENST00000267622	ENST00000554176		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92461696	-	CYP46A1	chr14	100165803	+
intron-3CDS	ENST00000555105	ENST00000261835		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92461696	-	CYP46A1	chr14	100165803	+
intron-5UTR	ENST00000555105	ENST00000423126		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92461696	-	CYP46A1	chr14	100165803	+
intron-intron	ENST00000555105	ENST00000554176		TCGA	LD	BRCA	TCGA-AO-A0JD-01A	TRIP11	chr14	92461696	-	CYP46A1	chr14	100165803	+
Frame-shit	ENST00000374050	ENST00000535648		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000346706		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000340094		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000345230		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000350763		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000341037		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
In-frame	ENST00000374050	ENST00000423613		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000537320		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
Frame-shit	ENST00000374050	ENST00000542877		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
5CDS-intron	ENST00000374050	ENST00000481475		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000535648		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000346706		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000340094		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000345230		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000350763		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000341037		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000423613		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000537320		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-3CDS	ENST00000473413	ENST00000542877		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
3UTR-intron	ENST00000473413	ENST00000481475		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	ATP6V1G1	chr9	117350200	+	TNC	chr9	117783546	-
In-frame	ENST00000322213	ENST00000326153		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	SMC1A	chrX	53421698	-	GTPBP6	chrY	171864	-
intron-3CDS	ENST00000469129	ENST00000326153		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	SMC1A	chrX	53421698	-	GTPBP6	chrY	171864	-
intron-3CDS	ENST00000375340	ENST00000326153		TCGA	LD	BRCA	TCGA-AO-A0JE-01A	SMC1A	chrX	53421698	-	GTPBP6	chrY	171864	-
intron-3CDS	ENST00000340149	ENST00000532481		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000527134		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000304716		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000526415		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000531855		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000393427		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000525409		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000533193		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-intron	ENST00000340149	ENST00000525034		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
In-frame	ENST00000361507	ENST00000532481		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000527134		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000304716		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000526415		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000531855		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000393427		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000525409		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000533193		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000361507	ENST00000525034		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-3CDS	ENST00000526030	ENST00000532481		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000527134		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000304716		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000526415		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000531855		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000393427		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000525409		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000533193		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
5UTR-intron	ENST00000526030	ENST00000525034		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GAB2	chr11	78128692	-	AAMDC	chr11	77629107	+
intron-3CDS	ENST00000379284	ENST00000275016		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
intron-intron	ENST00000379284	ENST00000489657		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
Frame-shit	ENST00000379287	ENST00000275016		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
5CDS-intron	ENST00000379287	ENST00000489657		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
Frame-shit	ENST00000603223	ENST00000275016		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
5CDS-intron	ENST00000603223	ENST00000489657		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
intron-3CDS	ENST00000379278	ENST00000275016		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
intron-intron	ENST00000379278	ENST00000489657		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	GFOD1	chr6	13486870	-	CYP39A1	chr6	46607405	-
5CDS-intron	ENST00000336915	ENST00000424486		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53805343	-
5CDS-5UTR	ENST00000336915	ENST00000575734		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53805343	-
5CDS-intron	ENST00000336915	ENST00000570586		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53805343	-
5CDS-intron	ENST00000584924	ENST00000424486		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53805343	-
5CDS-5UTR	ENST00000584924	ENST00000575734		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53805343	-
5CDS-intron	ENST00000584924	ENST00000570586		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	SKAP1	chr17	46423267	-	TMEM100	chr17	53805343	-
3UTR-5UTR	ENST00000581865	ENST00000355938		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
3UTR-5UTR	ENST00000581865	ENST00000503641		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
3UTR-5UTR	ENST00000581865	ENST00000514808		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
3UTR-5UTR	ENST00000581865	ENST00000393366		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
3UTR-5UTR	ENST00000581865	ENST00000506855		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
3UTR-intron	ENST00000581865	ENST00000513781		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
5UTR-5UTR	ENST00000312655	ENST00000355938		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
5UTR-5UTR	ENST00000312655	ENST00000503641		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
5UTR-5UTR	ENST00000312655	ENST00000514808		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
5UTR-5UTR	ENST00000312655	ENST00000393366		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
5UTR-5UTR	ENST00000312655	ENST00000506855		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
5UTR-intron	ENST00000312655	ENST00000513781		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
intron-5UTR	ENST00000585166	ENST00000355938		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
intron-5UTR	ENST00000585166	ENST00000503641		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
intron-5UTR	ENST00000585166	ENST00000514808		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
intron-5UTR	ENST00000585166	ENST00000393366		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
intron-5UTR	ENST00000585166	ENST00000506855		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
intron-intron	ENST00000585166	ENST00000513781		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	ATP5G1	chr17	46970771	+
3UTR-3CDS	ENST00000581865	ENST00000360943		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	UBE2Z	chr17	46993438	+
5UTR-3CDS	ENST00000312655	ENST00000360943		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	UBE2Z	chr17	46993438	+
intron-3CDS	ENST00000585166	ENST00000360943		TCGA	LD	BRCA	TCGA-AO-A0JG-01A	YPEL2	chr17	57409185	+	UBE2Z	chr17	46993438	+
Frame-shit	ENST00000262219	ENST00000297579		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-intron	ENST00000262219	ENST00000521716		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-intron	ENST00000262219	ENST00000521971		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-3UTR	ENST00000262219	ENST00000521999		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-intron	ENST00000262219	ENST00000519682		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
Frame-shit	ENST00000419625	ENST00000297579		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-intron	ENST00000419625	ENST00000521716		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-intron	ENST00000419625	ENST00000521971		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-3UTR	ENST00000419625	ENST00000521999		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-intron	ENST00000419625	ENST00000519682		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
intron-3CDS	ENST00000519045	ENST00000297579		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
intron-intron	ENST00000519045	ENST00000521716		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
intron-intron	ENST00000519045	ENST00000521971		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
intron-3UTR	ENST00000519045	ENST00000521999		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
intron-intron	ENST00000519045	ENST00000519682		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	ANXA13	chr8	124714882	-	DCAF13	chr8	104452364	+
5CDS-5UTR	ENST00000409790	ENST00000571688		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000413364		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000339430		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000381810		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000570904		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000571459		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000409790	ENST00000572255		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000576036		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000574763		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000571976		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000574703		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571688		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000413364		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000339430		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000381810		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000570904		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571459		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000409552	ENST00000572255		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000576036		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000574763		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571976		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000574703		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000571688		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000413364		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000339430		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000381810		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000570904		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000571459		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-intron	ENST00000465491	ENST00000572255		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000576036		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000574763		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000571976		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000465491	ENST00000574703		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000571688		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000413364		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000339430		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000381810		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000570904		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000571459		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-intron	ENST00000381822	ENST00000572255		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000576036		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000574763		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000571976		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000381822	ENST00000574703		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	CLEC16A	chr16	11220003	+	LITAF	chr16	11650591	-
5UTR-3UTR	ENST00000359543	ENST00000571790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
5UTR-3UTR	ENST00000359543	ENST00000283027		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
5UTR-3UTR	ENST00000359543	ENST00000433392		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
intron-3UTR	ENST00000566033	ENST00000571790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
intron-3UTR	ENST00000566033	ENST00000283027		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
intron-3UTR	ENST00000566033	ENST00000433392		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
intron-3UTR	ENST00000536829	ENST00000571790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
intron-3UTR	ENST00000536829	ENST00000283027		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
intron-3UTR	ENST00000536829	ENST00000433392		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	EMP2	chr16	10674406	-	NUBP1	chr16	10841000	+
5UTR-5UTR	ENST00000571589	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000574045	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000318282	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000572567	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000341243	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
3UTR-5UTR	ENST00000575537	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000573051	ENST00000573319		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	BCAR4	chr16	11914154	-
5UTR-3CDS	ENST00000571589	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-3CDS	ENST00000571589	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-intron	ENST00000571589	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-intron	ENST00000571589	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-3CDS	ENST00000574045	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-3CDS	ENST00000574045	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-intron	ENST00000574045	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-intron	ENST00000574045	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-3CDS	ENST00000318282	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-3CDS	ENST00000318282	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-intron	ENST00000318282	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
5UTR-intron	ENST00000318282	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000572567	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000572567	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-intron	ENST00000572567	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-intron	ENST00000572567	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000341243	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000341243	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-intron	ENST00000341243	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-intron	ENST00000341243	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
3UTR-3CDS	ENST00000575537	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
3UTR-3CDS	ENST00000575537	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
3UTR-intron	ENST00000575537	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
3UTR-intron	ENST00000575537	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000573051	ENST00000409790		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000573051	ENST00000409552		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-intron	ENST00000573051	ENST00000465491		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-intron	ENST00000573051	ENST00000381822		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	MKL2	chr16	14173211	+	CLEC16A	chr16	11096931	+
intron-3CDS	ENST00000574923	ENST00000572173		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
intron-intron	ENST00000574923	ENST00000572992		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
intron-intron	ENST00000574923	ENST00000381820		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
intron-intron	ENST00000574923	ENST00000312499		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
intron-intron	ENST00000574923	ENST00000576027		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
Frame-shit	ENST00000283025	ENST00000572173		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
5CDS-intron	ENST00000283025	ENST00000572992		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
5CDS-intron	ENST00000283025	ENST00000381820		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
5CDS-intron	ENST00000283025	ENST00000312499		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
5CDS-intron	ENST00000283025	ENST00000576027		TCGA	LD	BRCA	TCGA-AO-A0JL-01A	TEKT5	chr16	10775850	-	RMI2	chr16	11444499	+
Frame-shit	ENST00000584601	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000584601	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000584601	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000406381	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000406381	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000406381	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000541774	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000541774	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000541774	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000445658	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000445658	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000445658	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000540147	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000540147	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000540147	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000584450	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000584450	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000584450	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000269571	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000269571	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000269571	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000578199	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000578199	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000578199	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000540042	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
Frame-shit	ENST00000540042	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5CDS-5UTR	ENST00000540042	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
intron-3CDS	ENST00000584888	ENST00000269586		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
intron-3CDS	ENST00000584888	ENST00000444555		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
intron-5UTR	ENST00000584888	ENST00000583123		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	ERBB2	chr17	37868701	+	ARL5C	chr17	37321392	-
5UTR-3CDS	ENST00000355897	ENST00000295797		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	GPR160	chr3	169756831	+	PRKCI	chr3	169977757	+
3UTR-3CDS	ENST00000482813	ENST00000295797		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	GPR160	chr3	169756831	+	PRKCI	chr3	169977757	+
Frame-shit	ENST00000167462	ENST00000570565		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000167462	ENST00000442502		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000167462	ENST00000340813		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000167462	ENST00000451037		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000167462	ENST00000285273		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000167462	ENST00000571918		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000375227	ENST00000570565		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000375227	ENST00000442502		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000375227	ENST00000340813		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000375227	ENST00000451037		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000375227	ENST00000285273		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-5UTR	ENST00000375227	ENST00000571918		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000392550	ENST00000570565		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000392550	ENST00000442502		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000392550	ENST00000340813		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000392550	ENST00000451037		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000392550	ENST00000285273		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000392550	ENST00000571918		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000578363	ENST00000570565		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000578363	ENST00000442502		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000578363	ENST00000340813		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000578363	ENST00000451037		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-3CDS	ENST00000578363	ENST00000285273		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
intron-5UTR	ENST00000578363	ENST00000571918		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000577200	ENST00000570565		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000577200	ENST00000442502		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000577200	ENST00000340813		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000577200	ENST00000451037		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000577200	ENST00000285273		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000577200	ENST00000571918		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	LLGL2	chr17	73567181	+	CA10	chr17	49825178	-
Frame-shit	ENST00000394287	ENST00000333461		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	MED1	chr17	37575970	-	STAC2	chr17	37368649	-
Frame-shit	ENST00000300651	ENST00000333461		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	MED1	chr17	37575970	-	STAC2	chr17	37368649	-
intron-3CDS	ENST00000393193	ENST00000535342		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000393193	ENST00000392769		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000393193	ENST00000541355		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000393193	ENST00000537949		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000393193	ENST00000317442		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-intron	ENST00000393193	ENST00000580482		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000376392	ENST00000535342		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000376392	ENST00000392769		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000376392	ENST00000541355		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000376392	ENST00000537949		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000376392	ENST00000317442		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-intron	ENST00000376392	ENST00000580482		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000555572	ENST00000535342		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000555572	ENST00000392769		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000555572	ENST00000541355		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000555572	ENST00000537949		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000555572	ENST00000317442		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-intron	ENST00000555572	ENST00000580482		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	NME2	chr17	49243858	+	CEP112	chr17	63637183	-
intron-3CDS	ENST00000316881	ENST00000393853		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3CDS	ENST00000316881	ENST00000240335		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3UTR	ENST00000316881	ENST00000589449		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3CDS	ENST00000573108	ENST00000393853		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3CDS	ENST00000573108	ENST00000240335		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3UTR	ENST00000573108	ENST00000589449		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3CDS	ENST00000537230	ENST00000393853		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3CDS	ENST00000537230	ENST00000240335		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
intron-3UTR	ENST00000537230	ENST00000589449		TCGA	LD	BRCA	TCGA-AO-A0JM-01A	TRIM25	chr17	54969379	-	TBX4	chr17	59560261	+
3UTR-3CDS	ENST00000437774	ENST00000556922		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-5UTR	ENST00000437774	ENST00000554444		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-5UTR	ENST00000437774	ENST00000315491		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-intron	ENST00000437774	ENST00000554116		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-intron	ENST00000437774	ENST00000555576		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-intron	ENST00000437774	ENST00000554336		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-intron	ENST00000437774	ENST00000553967		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
3UTR-5UTR	ENST00000437774	ENST00000304984		TCGA	LD	BRCA	TCGA-AO-A124-01A	AFG3L1P	chr16	90048331	+	TUBB3	chr16	89998979	+
In-frame	ENST00000598494	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A124-01A	CRB3	chr19	6466620	+	RTP1	chr3	186915378	+
In-frame	ENST00000600229	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A124-01A	CRB3	chr19	6466620	+	RTP1	chr3	186915378	+
In-frame	ENST00000356762	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A124-01A	CRB3	chr19	6466620	+	RTP1	chr3	186915378	+
Frame-shit	ENST00000308243	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A124-01A	CRB3	chr19	6466620	+	RTP1	chr3	186915378	+
Frame-shit	ENST00000441478	ENST00000392587		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000441478	ENST00000392586		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000441478	ENST00000392588		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000441478	ENST00000392589		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000441478	ENST00000359451		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000230124	ENST00000392587		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000230124	ENST00000392586		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000230124	ENST00000392588		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000230124	ENST00000392589		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
Frame-shit	ENST00000230124	ENST00000359451		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
intron-3CDS	ENST00000368941	ENST00000392587		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
intron-3CDS	ENST00000368941	ENST00000392586		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
intron-3CDS	ENST00000368941	ENST00000392588		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
intron-3CDS	ENST00000368941	ENST00000392589		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
intron-3CDS	ENST00000368941	ENST00000359451		TCGA	LD	BRCA	TCGA-AO-A124-01A	FIG4	chr6	110064975	+	WASF1	chr6	110434663	-
In-frame	ENST00000396364	ENST00000361138		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
5CDS-intron	ENST00000396364	ENST00000471372		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
In-frame	ENST00000377270	ENST00000361138		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
5CDS-intron	ENST00000377270	ENST00000471372		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
Frame-shit	ENST00000396366	ENST00000361138		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
5CDS-intron	ENST00000396366	ENST00000471372		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
In-frame	ENST00000498653	ENST00000361138		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
5CDS-intron	ENST00000498653	ENST00000471372		TCGA	LD	BRCA	TCGA-AO-A124-01A	FXN	chr9	71679951	+	SMC5	chr9	72879220	+
5CDS-5UTR	ENST00000258729	ENST00000219151		TCGA	LD	BRCA	TCGA-AO-A124-01A	IGF2BP3	chr7	23390924	-	ACSM1	chr16	20682993	-
5CDS-5UTR	ENST00000258729	ENST00000307493		TCGA	LD	BRCA	TCGA-AO-A124-01A	IGF2BP3	chr7	23390924	-	ACSM1	chr16	20682993	-
5CDS-5UTR	ENST00000258729	ENST00000520010		TCGA	LD	BRCA	TCGA-AO-A124-01A	IGF2BP3	chr7	23390924	-	ACSM1	chr16	20682993	-
intron-5UTR	ENST00000491719	ENST00000219151		TCGA	LD	BRCA	TCGA-AO-A124-01A	IGF2BP3	chr7	23390924	-	ACSM1	chr16	20682993	-
intron-5UTR	ENST00000491719	ENST00000307493		TCGA	LD	BRCA	TCGA-AO-A124-01A	IGF2BP3	chr7	23390924	-	ACSM1	chr16	20682993	-
intron-5UTR	ENST00000491719	ENST00000520010		TCGA	LD	BRCA	TCGA-AO-A124-01A	IGF2BP3	chr7	23390924	-	ACSM1	chr16	20682993	-
In-frame	ENST00000399788	ENST00000305108		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
In-frame	ENST00000399788	ENST00000397265		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000542920		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000433832		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000399788	ENST00000537416		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000305108		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000397265		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000542920		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000433832		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-intron	ENST00000540838	ENST00000537416		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000305108		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000397265		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000542920		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000433832		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000382815	ENST00000537416		TCGA	LD	BRCA	TCGA-AO-A124-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
Frame-shit	ENST00000262189	ENST00000329008		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000262189	ENST00000395275		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000262189	ENST00000395276		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000262189	ENST00000405452		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000262189	ENST00000412588		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000262189	ENST00000431984		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000355193	ENST00000329008		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000355193	ENST00000395275		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000355193	ENST00000395276		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000355193	ENST00000405452		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000355193	ENST00000412588		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
Frame-shit	ENST00000355193	ENST00000431984		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485655	ENST00000329008		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485655	ENST00000395275		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485655	ENST00000395276		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485655	ENST00000405452		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485655	ENST00000412588		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485655	ENST00000431984		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485241	ENST00000329008		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485241	ENST00000395275		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485241	ENST00000395276		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485241	ENST00000405452		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485241	ENST00000412588		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
intron-3CDS	ENST00000485241	ENST00000431984		TCGA	LD	BRCA	TCGA-AO-A124-01A	KMT2C	chr7	151859202	-	CALN1	chr7	71571279	-
5CDS-3UTR	ENST00000584667	ENST00000584767		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
5CDS-5UTR	ENST00000584667	ENST00000581589		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
5CDS-intron	ENST00000584667	ENST00000322444		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
5CDS-3UTR	ENST00000355423	ENST00000584767		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
5CDS-5UTR	ENST00000355423	ENST00000581589		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
5CDS-intron	ENST00000355423	ENST00000322444		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
3UTR-3UTR	ENST00000579864	ENST00000584767		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
3UTR-5UTR	ENST00000579864	ENST00000581589		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
3UTR-intron	ENST00000579864	ENST00000322444		TCGA	LD	BRCA	TCGA-AO-A124-01A	SAP30BP	chr17	73664705	+	KCTD2	chr17	73031327	+
5CDS-5UTR	ENST00000305476	ENST00000537031		TCGA	LD	BRCA	TCGA-AO-A124-01A	SEMA4C	chr2	97529419	-	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000305476	ENST00000310594		TCGA	LD	BRCA	TCGA-AO-A124-01A	SEMA4C	chr2	97529419	-	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000305476	ENST00000397196		TCGA	LD	BRCA	TCGA-AO-A124-01A	SEMA4C	chr2	97529419	-	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000305476	ENST00000542408		TCGA	LD	BRCA	TCGA-AO-A124-01A	SEMA4C	chr2	97529419	-	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000305476	ENST00000545747		TCGA	LD	BRCA	TCGA-AO-A124-01A	SEMA4C	chr2	97529419	-	WNT5B	chr12	1740464	+
In-frame	ENST00000361138	ENST00000405709		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000361138	ENST00000331762		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000361138	ENST00000452895		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000361138	ENST00000415362		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000361138	ENST00000447215		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000361138	ENST00000437687		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000361138	ENST00000489381		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000361138	ENST00000450877		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000471372	ENST00000405709		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000471372	ENST00000331762		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000471372	ENST00000452895		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000471372	ENST00000415362		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000471372	ENST00000447215		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000471372	ENST00000437687		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000471372	ENST00000489381		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000471372	ENST00000450877		TCGA	LD	BRCA	TCGA-AO-A124-01A	SMC5	chr9	72882891	+	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000419617	ENST00000379933		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000419617	ENST00000379938		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000419617	ENST00000334984		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000419617	ENST00000349384		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000523601	ENST00000379933		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000523601	ENST00000379938		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000523601	ENST00000334984		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000523601	ENST00000349384		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000521768	ENST00000379933		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000521768	ENST00000379938		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000521768	ENST00000334984		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000521768	ENST00000349384		TCGA	LD	BRCA	TCGA-AO-A124-01A	STK3	chr8	99591892	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000372084	ENST00000367282		TCGA	LD	BRCA	TCGA-AO-A124-01A	TESK2	chr1	45923236	-	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000372086	ENST00000367282		TCGA	LD	BRCA	TCGA-AO-A124-01A	TESK2	chr1	45923236	-	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000341771	ENST00000367282		TCGA	LD	BRCA	TCGA-AO-A124-01A	TESK2	chr1	45923236	-	GPR37L1	chr1	202096869	+
5UTR-3CDS	ENST00000486676	ENST00000367282		TCGA	LD	BRCA	TCGA-AO-A124-01A	TESK2	chr1	45923236	-	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000538496	ENST00000367282		TCGA	LD	BRCA	TCGA-AO-A124-01A	TESK2	chr1	45923236	-	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000451835	ENST00000367282		TCGA	LD	BRCA	TCGA-AO-A124-01A	TESK2	chr1	45923236	-	GPR37L1	chr1	202096869	+
intron-intron	ENST00000405201	ENST00000280571		TCGA	LD	BRCA	TCGA-AO-A126-01A	NCOR2	chr12	124812114	-	RILPL2	chr12	123903134	-
intron-intron	ENST00000404621	ENST00000280571		TCGA	LD	BRCA	TCGA-AO-A126-01A	NCOR2	chr12	124812114	-	RILPL2	chr12	123903134	-
intron-intron	ENST00000404121	ENST00000280571		TCGA	LD	BRCA	TCGA-AO-A126-01A	NCOR2	chr12	124812114	-	RILPL2	chr12	123903134	-
intron-intron	ENST00000356219	ENST00000280571		TCGA	LD	BRCA	TCGA-AO-A126-01A	NCOR2	chr12	124812114	-	RILPL2	chr12	123903134	-
intron-intron	ENST00000397355	ENST00000280571		TCGA	LD	BRCA	TCGA-AO-A126-01A	NCOR2	chr12	124812114	-	RILPL2	chr12	123903134	-
intron-intron	ENST00000429285	ENST00000280571		TCGA	LD	BRCA	TCGA-AO-A126-01A	NCOR2	chr12	124812114	-	RILPL2	chr12	123903134	-
intron-intron	ENST00000367765	ENST00000439373		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
intron-intron	ENST00000367765	ENST00000367764		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000367767	ENST00000439373		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000367767	ENST00000367764		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000361580	ENST00000439373		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000361580	ENST00000367764		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5UTR-intron	ENST00000538366	ENST00000439373		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5UTR-intron	ENST00000538366	ENST00000367764		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
intron-intron	ENST00000540905	ENST00000439373		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
intron-intron	ENST00000540905	ENST00000367764		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
intron-intron	ENST00000490550	ENST00000439373		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
intron-intron	ENST00000490550	ENST00000367764		TCGA	LD	BRCA	TCGA-AO-A128-01A	KIFAP3	chr1	170043577	-	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000250237	ENST00000420083		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000449870		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000318511		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000407004		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000589998		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000250241		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000592763		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000588657		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000250237	ENST00000590261		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000250237	ENST00000586544		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000420083		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000449870		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000318511		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000407004		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000589998		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000250241		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000592763		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000588657		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-intron	ENST00000585885	ENST00000590261		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-3UTR	ENST00000585885	ENST00000586544		TCGA	LD	BRCA	TCGA-AO-A128-01A	QTRT1	chr19	10823716	+	ILF3	chr19	10799226	+
intron-3CDS	ENST00000432519	ENST00000250863		TCGA	LD	BRCA	TCGA-AO-A128-01A	RFTN1	chr3	16535232	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000432519	ENST00000399444		TCGA	LD	BRCA	TCGA-AO-A128-01A	RFTN1	chr3	16535232	-	DAZL	chr3	16640105	-
In-frame	ENST00000334133	ENST00000250863		TCGA	LD	BRCA	TCGA-AO-A128-01A	RFTN1	chr3	16535232	-	DAZL	chr3	16640105	-
In-frame	ENST00000334133	ENST00000399444		TCGA	LD	BRCA	TCGA-AO-A128-01A	RFTN1	chr3	16535232	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000483671	ENST00000250863		TCGA	LD	BRCA	TCGA-AO-A128-01A	RFTN1	chr3	16535232	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000483671	ENST00000399444		TCGA	LD	BRCA	TCGA-AO-A128-01A	RFTN1	chr3	16535232	-	DAZL	chr3	16640105	-
5CDS-intron	ENST00000528838	ENST00000423230		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
5CDS-intron	ENST00000528838	ENST00000398656		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
5CDS-intron	ENST00000528838	ENST00000534366		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
5CDS-intron	ENST00000528838	ENST00000528919		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
5CDS-intron	ENST00000528838	ENST00000326134		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
5CDS-intron	ENST00000528838	ENST00000527071		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
5CDS-intron	ENST00000528838	ENST00000544576		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000423230		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000398656		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000534366		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000528919		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000326134		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000527071		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000400780	ENST00000544576		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000423230		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000398656		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000534366		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000528919		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000326134		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000527071		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-intron	ENST00000528842	ENST00000544576		TCGA	LD	BRCA	TCGA-AO-A129-01A	HSF1	chr8	145515556	+	MROH1	chr8	145305115	+
intron-3CDS	ENST00000448637	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A129-01A	LPP	chr3	187943315	+	RTP1	chr3	186915378	+
5UTR-3CDS	ENST00000312675	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A129-01A	LPP	chr3	187943315	+	RTP1	chr3	186915378	+
5UTR-3CDS	ENST00000543006	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A129-01A	LPP	chr3	187943315	+	RTP1	chr3	186915378	+
intron-3CDS	ENST00000471917	ENST00000312295		TCGA	LD	BRCA	TCGA-AO-A129-01A	LPP	chr3	187943315	+	RTP1	chr3	186915378	+
In-frame	ENST00000229795	ENST00000382374		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
5CDS-intron	ENST00000229795	ENST00000479790		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
In-frame	ENST00000229794	ENST00000382374		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
5CDS-intron	ENST00000229794	ENST00000479790		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
In-frame	ENST00000468133	ENST00000382374		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
5CDS-intron	ENST00000468133	ENST00000479790		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
In-frame	ENST00000310795	ENST00000382374		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
5CDS-intron	ENST00000310795	ENST00000479790		TCGA	LD	BRCA	TCGA-AO-A129-01A	MAPK14	chr6	36044376	+	MICU2	chr13	22113827	-
In-frame	ENST00000407936	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000407936	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000407936	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000407936	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000407936	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000407936	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000407936	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-intron	ENST00000407936	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000405557	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000405557	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000405557	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000405557	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000405557	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000405557	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000405557	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-intron	ENST00000405557	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000442738	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000442738	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000442738	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000442738	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000442738	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000442738	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000442738	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-intron	ENST00000442738	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
Frame-shit	ENST00000460648	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
Frame-shit	ENST00000460648	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
Frame-shit	ENST00000460648	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
Frame-shit	ENST00000460648	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
Frame-shit	ENST00000460648	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
Frame-shit	ENST00000460648	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000460648	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-intron	ENST00000460648	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-3CDS	ENST00000488684	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-3CDS	ENST00000488684	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-3CDS	ENST00000488684	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-3CDS	ENST00000488684	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-3CDS	ENST00000488684	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-3CDS	ENST00000488684	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-5UTR	ENST00000488684	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
3UTR-intron	ENST00000488684	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000606538	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000606538	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000606538	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000606538	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000606538	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000606538	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000606538	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-intron	ENST00000606538	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000470701	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000470701	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000470701	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000470701	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000470701	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
In-frame	ENST00000470701	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000470701	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-intron	ENST00000470701	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-3CDS	ENST00000608713	ENST00000414350		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-3CDS	ENST00000608713	ENST00000343632		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-3CDS	ENST00000608713	ENST00000381756		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-3CDS	ENST00000608713	ENST00000405147		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-3CDS	ENST00000608713	ENST00000325180		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-3CDS	ENST00000608713	ENST00000337437		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-5UTR	ENST00000608713	ENST00000406772		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
intron-intron	ENST00000608713	ENST00000488672		TCGA	LD	BRCA	TCGA-AO-A129-01A	POLR2F	chr22	38363177	+	GGA1	chr22	38012929	+
5CDS-5UTR	ENST00000291041	ENST00000219169		TCGA	LD	BRCA	TCGA-AO-A129-01A	PSKH1	chr16	67943609	+	NUTF2	chr16	67899005	+
5CDS-5UTR	ENST00000291041	ENST00000569436		TCGA	LD	BRCA	TCGA-AO-A129-01A	PSKH1	chr16	67943609	+	NUTF2	chr16	67899005	+
5CDS-5UTR	ENST00000291041	ENST00000568396		TCGA	LD	BRCA	TCGA-AO-A129-01A	PSKH1	chr16	67943609	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000575198	ENST00000219169		TCGA	LD	BRCA	TCGA-AO-A129-01A	PSKH1	chr16	67943609	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000575198	ENST00000569436		TCGA	LD	BRCA	TCGA-AO-A129-01A	PSKH1	chr16	67943609	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000575198	ENST00000568396		TCGA	LD	BRCA	TCGA-AO-A129-01A	PSKH1	chr16	67943609	+	NUTF2	chr16	67899005	+
5CDS-5UTR	ENST00000596304	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000596304	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596304	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000430157	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000430157	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000596273	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000596273	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000442744	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000442744	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000595683	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595683	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000595158	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000595158	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000598780	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000598780	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000599551	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599551	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000597451	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000597451	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000540691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000539106		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000222307		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000599595	ENST00000600796		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000601630		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000599000		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000595073		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000599319		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000602094		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000599595	ENST00000598830		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBA52	chr19	18684558	+	KXD1	chr19	18672846	+
Frame-shit	ENST00000345496	ENST00000344691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000345496	ENST00000325074		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000345496	ENST00000437180		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000345496	ENST00000300305		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
Frame-shit	ENST00000345496	ENST00000399240		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000345496	ENST00000486278		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000345496	ENST00000494829		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5CDS-intron	ENST00000345496	ENST00000358356		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000477954	ENST00000344691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000477954	ENST00000325074		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000477954	ENST00000437180		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000477954	ENST00000300305		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000477954	ENST00000399240		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000477954	ENST00000486278		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000477954	ENST00000494829		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000477954	ENST00000358356		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000330942	ENST00000344691		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000330942	ENST00000325074		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000330942	ENST00000437180		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000330942	ENST00000300305		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-3CDS	ENST00000330942	ENST00000399240		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000330942	ENST00000486278		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000330942	ENST00000494829		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
5UTR-intron	ENST00000330942	ENST00000358356		TCGA	LD	BRCA	TCGA-AO-A129-01A	UBE2G2	chr21	46221621	-	RUNX1	chr21	36171759	-
intron-3CDS	ENST00000493368	ENST00000379328		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
intron-3CDS	ENST00000493368	ENST00000346208		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
intron-3UTR	ENST00000493368	ENST00000461472		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
Frame-shit	ENST00000318158	ENST00000379328		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
Frame-shit	ENST00000318158	ENST00000346208		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
5CDS-3UTR	ENST00000318158	ENST00000461472		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
Frame-shit	ENST00000607784	ENST00000379328		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
Frame-shit	ENST00000607784	ENST00000346208		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
5CDS-3UTR	ENST00000607784	ENST00000461472		TCGA	LD	BRCA	TCGA-AO-A12A-01A	GRHPR	chr9	37422830	+	GATA3	chr10	8115702	+
5UTR-5UTR	ENST00000412770	ENST00000376650		TCGA	LD	BRCA	TCGA-AO-A12C-01A	PPP6R1	chr19	55769803	-	DPRX	chr19	54135316	+
intron-5UTR	ENST00000587283	ENST00000376650		TCGA	LD	BRCA	TCGA-AO-A12C-01A	PPP6R1	chr19	55769803	-	DPRX	chr19	54135316	+
Frame-shit	ENST00000262291	ENST00000448276		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
Frame-shit	ENST00000262291	ENST00000323347		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
Frame-shit	ENST00000262291	ENST00000225742		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000537567	ENST00000448276		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000537567	ENST00000323347		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000537567	ENST00000225742		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000539763	ENST00000448276		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000539763	ENST00000323347		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000539763	ENST00000225742		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000536180	ENST00000448276		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000536180	ENST00000323347		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5UTR-3CDS	ENST00000536180	ENST00000225742		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
Frame-shit	ENST00000545362	ENST00000448276		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
Frame-shit	ENST00000545362	ENST00000323347		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
Frame-shit	ENST00000545362	ENST00000225742		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
intron-3CDS	ENST00000588617	ENST00000448276		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
intron-3CDS	ENST00000588617	ENST00000323347		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
intron-3CDS	ENST00000588617	ENST00000225742		TCGA	LD	BRCA	TCGA-AO-A12C-01A	VMP1	chr17	57808883	+	SMARCD2	chr17	61910351	-
5CDS-5UTR	ENST00000433674	ENST00000340934		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-intron	ENST00000433674	ENST00000496267		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-5UTR	ENST00000433674	ENST00000537020		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-5UTR	ENST00000433674	ENST00000539697		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-5UTR	ENST00000295006	ENST00000340934		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-intron	ENST00000295006	ENST00000496267		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-5UTR	ENST00000295006	ENST00000537020		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
5CDS-5UTR	ENST00000295006	ENST00000539697		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
intron-5UTR	ENST00000474026	ENST00000340934		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
intron-intron	ENST00000474026	ENST00000496267		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
intron-5UTR	ENST00000474026	ENST00000537020		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
intron-5UTR	ENST00000474026	ENST00000539697		TCGA	LD	BRCA	TCGA-AO-A12D-01A	CAPN2	chr1	223905533	+	BROX	chr1	222889026	+
Frame-shit	ENST00000264230	ENST00000512215		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000264230	ENST00000394854		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000264230	ENST00000323055		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000264230	ENST00000394853		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
5CDS-intron	ENST00000264230	ENST00000507176		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
5CDS-intron	ENST00000264230	ENST00000523694		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
5CDS-intron	ENST00000264230	ENST00000510292		TCGA	LD	BRCA	TCGA-AO-A12D-01A	NOA1	chr4	57832786	-	PPP3CA	chr4	102117273	-
5CDS-5UTR	ENST00000308025	ENST00000603798		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5CDS-5UTR	ENST00000308025	ENST00000398453		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5CDS-5UTR	ENST00000308025	ENST00000603864		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5CDS-5UTR	ENST00000308025	ENST00000605627		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5CDS-5UTR	ENST00000308025	ENST00000603838		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5CDS-5UTR	ENST00000308025	ENST00000604188		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5UTR-5UTR	ENST00000553182	ENST00000603798		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5UTR-5UTR	ENST00000553182	ENST00000398453		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5UTR-5UTR	ENST00000553182	ENST00000603864		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5UTR-5UTR	ENST00000553182	ENST00000605627		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5UTR-5UTR	ENST00000553182	ENST00000603838		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5UTR-5UTR	ENST00000553182	ENST00000604188		TCGA	LD	BRCA	TCGA-AO-A12E-01A	DDX23	chr12	49237723	-	SMAGP	chr12	51663100	-
5CDS-intron	ENST00000521022	ENST00000337198		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521022	ENST00000347770		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521022	ENST00000522311		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000416984	ENST00000337198		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000416984	ENST00000347770		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000416984	ENST00000522311		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521777	ENST00000337198		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521777	ENST00000347770		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521777	ENST00000522311		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000397363	ENST00000337198		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000397363	ENST00000347770		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000397363	ENST00000522311		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000521070	ENST00000337198		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000521070	ENST00000347770		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000521070	ENST00000522311		TCGA	LD	BRCA	TCGA-AO-A12E-01A	INTS9	chr8	28654061	-	AZIN1	chr8	103899375	-
In-frame	ENST00000287878	ENST00000262189		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
In-frame	ENST00000287878	ENST00000355193		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000287878	ENST00000485655		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
5CDS-intron	ENST00000287878	ENST00000485241		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000418337	ENST00000262189		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000418337	ENST00000355193		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000418337	ENST00000485655		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
5CDS-intron	ENST00000418337	ENST00000485241		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
In-frame	ENST00000433631	ENST00000262189		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
In-frame	ENST00000433631	ENST00000355193		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000433631	ENST00000485655		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
5CDS-intron	ENST00000433631	ENST00000485241		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
In-frame	ENST00000492843	ENST00000262189		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
In-frame	ENST00000492843	ENST00000355193		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000492843	ENST00000485655		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
5CDS-intron	ENST00000492843	ENST00000485241		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000392801	ENST00000262189		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000392801	ENST00000355193		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000392801	ENST00000485655		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
5CDS-intron	ENST00000392801	ENST00000485241		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
intron-3CDS	ENST00000461529	ENST00000262189		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
intron-3CDS	ENST00000461529	ENST00000355193		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
intron-3CDS	ENST00000461529	ENST00000485655		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
intron-intron	ENST00000461529	ENST00000485241		TCGA	LD	BRCA	TCGA-AO-A12E-01A	PRKAG2	chr7	151329155	-	KMT2C	chr7	151834009	-
Frame-shit	ENST00000424082	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
5CDS-5UTR	ENST00000424082	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
Frame-shit	ENST00000259351	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
5CDS-5UTR	ENST00000259351	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
Frame-shit	ENST00000394022	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
5CDS-5UTR	ENST00000394022	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
Frame-shit	ENST00000373436	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
5CDS-5UTR	ENST00000373436	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
Frame-shit	ENST00000373434	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
5CDS-5UTR	ENST00000373434	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
Frame-shit	ENST00000394011	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
5CDS-5UTR	ENST00000394011	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
3UTR-3CDS	ENST00000480993	ENST00000342483		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
3UTR-5UTR	ENST00000480993	ENST00000543471		TCGA	LD	BRCA	TCGA-AO-A12G-01A	RALGPS1	chr9	129740024	+	ZNF79	chr9	130191111	+
Frame-shit	ENST00000378954	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000406122	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000402054	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000539122	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000332337	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000419554	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000452935	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000546051	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
intron-3CDS	ENST00000486927	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATL2	chr2	38522022	-	CSN2	chr4	70823352	-
In-frame	ENST00000295598	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATP1A1	chr1	116931334	+	CSN2	chr4	70823366	-
In-frame	ENST00000537345	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATP1A1	chr1	116931334	+	CSN2	chr4	70823366	-
In-frame	ENST00000369496	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATP1A1	chr1	116931334	+	CSN2	chr4	70823366	-
intron-3CDS	ENST00000491156	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ATP1A1	chr1	116931334	+	CSN2	chr4	70823366	-
intron-3CDS	ENST00000359979	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CCSER2	chr10	86274343	+	CSN2	chr4	70826725	-
intron-3CDS	ENST00000372088	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CCSER2	chr10	86274343	+	CSN2	chr4	70826725	-
3UTR-3CDS	ENST00000224756	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CCSER2	chr10	86274343	+	CSN2	chr4	70826725	-
intron-3CDS	ENST00000494144	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CCSER2	chr10	86274343	+	CSN2	chr4	70826725	-
intron-3CDS	ENST00000543283	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CCSER2	chr10	86274343	+	CSN2	chr4	70826725	-
In-frame	ENST00000444405	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN1S1	chr4	70798324	+	CSN2	chr4	70823522	-
In-frame	ENST00000246891	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN1S1	chr4	70798324	+	CSN2	chr4	70823522	-
In-frame	ENST00000507763	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN1S1	chr4	70798324	+	CSN2	chr4	70823522	-
In-frame	ENST00000507772	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN1S1	chr4	70798324	+	CSN2	chr4	70823522	-
In-frame	ENST00000505782	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN1S1	chr4	70798324	+	CSN2	chr4	70823522	-
In-frame	ENST00000353151	ENST00000444405		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70822992	-	CSN1S1	chr4	70801644	+
In-frame	ENST00000353151	ENST00000246891		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70822992	-	CSN1S1	chr4	70801644	+
In-frame	ENST00000353151	ENST00000507763		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70822992	-	CSN1S1	chr4	70801644	+
In-frame	ENST00000353151	ENST00000507772		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70822992	-	CSN1S1	chr4	70801644	+
In-frame	ENST00000353151	ENST00000505782		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70822992	-	CSN1S1	chr4	70801644	+
intron-3CDS	ENST00000353151	ENST00000301046		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70823211	-	LALBA	chr12	48962904	-
intron-3CDS	ENST00000353151	ENST00000549817		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	CSN2	chr4	70823211	-	LALBA	chr12	48962904	-
In-frame	ENST00000360184	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	DYNC1H1	chr14	102517129	+	CSN2	chr4	70826725	-
intron-3CDS	ENST00000556791	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	DYNC1H1	chr14	102517129	+	CSN2	chr4	70826725	-
intron-3CDS	ENST00000527001	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
Frame-shit	ENST00000257831	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
intron-3CDS	ENST00000450654	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
Frame-shit	ENST00000530286	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
Frame-shit	ENST00000533754	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
intron-3CDS	ENST00000531728	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
Frame-shit	ENST00000531794	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
intron-3CDS	ENST00000527935	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	EHF	chr11	34673342	+	CSN2	chr4	70823498	-
3UTR-3CDS	ENST00000267101	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ERBB3	chr12	56496111	+	CSN2	chr4	70826725	-
3UTR-3CDS	ENST00000450146	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ERBB3	chr12	56496111	+	CSN2	chr4	70826725	-
3UTR-3CDS	ENST00000415288	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ERBB3	chr12	56496111	+	CSN2	chr4	70826725	-
3UTR-3CDS	ENST00000553131	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ERBB3	chr12	56496111	+	CSN2	chr4	70826725	-
intron-3CDS	ENST00000411731	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ERBB3	chr12	56496111	+	CSN2	chr4	70826725	-
3UTR-3CDS	ENST00000549832	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	ERBB3	chr12	56496111	+	CSN2	chr4	70826725	-
3UTR-3CDS	ENST00000546500	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	HNRNPA1	chr12	54678888	+	CSN2	chr4	70823333	-
3UTR-3CDS	ENST00000340913	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	HNRNPA1	chr12	54678888	+	CSN2	chr4	70823333	-
intron-3CDS	ENST00000330752	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	HNRNPA1	chr12	54678888	+	CSN2	chr4	70823333	-
3UTR-3CDS	ENST00000547276	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	HNRNPA1	chr12	54678888	+	CSN2	chr4	70823333	-
intron-3CDS	ENST00000551803	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	HNRNPA1	chr12	54678888	+	CSN2	chr4	70823333	-
intron-3CDS	ENST00000369939	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	KIAA1324	chr1	109748065	+	CSN2	chr4	70823486	-
intron-3CDS	ENST00000529753	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	KIAA1324	chr1	109748065	+	CSN2	chr4	70823486	-
intron-3CDS	ENST00000369938	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	KIAA1324	chr1	109748065	+	CSN2	chr4	70823486	-
intron-3CDS	ENST00000301046	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	LALBA	chr12	48962905	-	CSN2	chr4	70823210	-
intron-3CDS	ENST00000549817	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	LALBA	chr12	48962905	-	CSN2	chr4	70823210	-
intron-3CDS	ENST00000454682	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000550952	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000356769	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000552540	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000393891	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000548563	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000546392	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3CDS	ENST00000551793	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	NACA	chr12	57106670	-	CSN2	chr4	70823069	-
intron-3UTR	ENST00000419197	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	PAFAH1B2	chr11	117008086	+	CSN2	chr4	70821167	-
intron-3UTR	ENST00000526888	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	PAFAH1B2	chr11	117008086	+	CSN2	chr4	70821167	-
intron-3UTR	ENST00000527958	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	PAFAH1B2	chr11	117008086	+	CSN2	chr4	70821167	-
intron-3UTR	ENST00000529887	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	PAFAH1B2	chr11	117008086	+	CSN2	chr4	70821167	-
intron-3UTR	ENST00000530272	ENST00000353151		TCGA	LD	BRCA	TCGA-AO-A1KO-01A	PAFAH1B2	chr11	117008086	+	CSN2	chr4	70821167	-
Frame-shit	ENST00000308159	ENST00000340124		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000308159	ENST00000440783		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000569842	ENST00000340124		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000569842	ENST00000440783		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000564887	ENST00000340124		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000564887	ENST00000440783		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
intron-3CDS	ENST00000569595	ENST00000340124		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
intron-3CDS	ENST00000569595	ENST00000440783		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000542526	ENST00000340124		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
Frame-shit	ENST00000542526	ENST00000440783		TCGA	LD	BRCA	TCGA-AO-A1KP-01A	NUP93	chr16	56873516	+	GPT2	chr16	46962819	+
5CDS-intron	ENST00000380152	ENST00000381655		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	BRCA2	chr13	32953652	+	ATP8A2	chr13	26501249	+
5CDS-intron	ENST00000380152	ENST00000255283		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	BRCA2	chr13	32953652	+	ATP8A2	chr13	26501249	+
5CDS-3UTR	ENST00000380152	ENST00000491840		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	BRCA2	chr13	32953652	+	ATP8A2	chr13	26501249	+
5CDS-intron	ENST00000544455	ENST00000381655		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	BRCA2	chr13	32953652	+	ATP8A2	chr13	26501249	+
5CDS-intron	ENST00000544455	ENST00000255283		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	BRCA2	chr13	32953652	+	ATP8A2	chr13	26501249	+
5CDS-3UTR	ENST00000544455	ENST00000491840		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	BRCA2	chr13	32953652	+	ATP8A2	chr13	26501249	+
3UTR-intron	ENST00000440973	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000440973	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000440973	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000338799	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000338799	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000338799	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000456483	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000456483	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000456483	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000443427	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000443427	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000443427	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000206249	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000206249	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
3UTR-intron	ENST00000206249	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000406599	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000406599	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000406599	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000427531	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000427531	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000427531	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000482101	ENST00000586746		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000482101	ENST00000215587		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
intron-intron	ENST00000482101	ENST00000585838		TCGA	LD	BRCA	TCGA-AO-A1KQ-01A	ESR1	chr6	152421451	+	POLR2E	chr19	1086592	-
In-frame	ENST00000289104	ENST00000317876		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000289104	ENST00000383180		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000289104	ENST00000536478		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000289104	ENST00000341790		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000289104	ENST00000484930		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000289104	ENST00000333911		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000423968	ENST00000317876		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000423968	ENST00000383180		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000423968	ENST00000536478		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000423968	ENST00000341790		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000423968	ENST00000484930		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000423968	ENST00000333911		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000464896	ENST00000317876		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000464896	ENST00000383180		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000464896	ENST00000536478		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000464896	ENST00000341790		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000464896	ENST00000484930		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000464896	ENST00000333911		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000461114	ENST00000317876		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000461114	ENST00000383180		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000461114	ENST00000536478		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000461114	ENST00000341790		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000461114	ENST00000484930		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000461114	ENST00000333911		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000474559	ENST00000317876		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000474559	ENST00000383180		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000474559	ENST00000536478		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000474559	ENST00000341790		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000474559	ENST00000484930		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
In-frame	ENST00000474559	ENST00000333911		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	MRAS	chr3	138091918	+	NME9	chr3	138025322	-
intron-3CDS	ENST00000531709	ENST00000294168		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	NXF1	chr11	62565060	-	TAF6L	chr11	62554221	+
intron-3CDS	ENST00000294172	ENST00000294168		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	NXF1	chr11	62565060	-	TAF6L	chr11	62554221	+
intron-3CDS	ENST00000532297	ENST00000294168		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	NXF1	chr11	62565060	-	TAF6L	chr11	62554221	+
intron-3CDS	ENST00000533048	ENST00000294168		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	NXF1	chr11	62565060	-	TAF6L	chr11	62554221	+
intron-3CDS	ENST00000531131	ENST00000294168		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	NXF1	chr11	62565060	-	TAF6L	chr11	62554221	+
intron-3CDS	ENST00000439713	ENST00000294168		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	NXF1	chr11	62565060	-	TAF6L	chr11	62554221	+
5UTR-3CDS	ENST00000535420	ENST00000368439		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000535420	ENST00000368436		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000535420	ENST00000308987		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3UTR	ENST00000535420	ENST00000471245		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-intron	ENST00000535420	ENST00000600888		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000368426	ENST00000368439		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000368426	ENST00000368436		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000368426	ENST00000308987		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3UTR	ENST00000368426	ENST00000471245		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-intron	ENST00000368426	ENST00000600888		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3CDS	ENST00000487542	ENST00000368439		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3CDS	ENST00000487542	ENST00000368436		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3CDS	ENST00000487542	ENST00000308987		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3UTR	ENST00000487542	ENST00000471245		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-intron	ENST00000487542	ENST00000600888		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000417934	ENST00000368439		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000417934	ENST00000368436		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000417934	ENST00000308987		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3UTR	ENST00000417934	ENST00000471245		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-intron	ENST00000417934	ENST00000600888		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000292176	ENST00000368439		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000292176	ENST00000368436		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000292176	ENST00000308987		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3UTR	ENST00000292176	ENST00000471245		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-intron	ENST00000292176	ENST00000600888		TCGA	LD	BRCA	TCGA-AO-A1KR-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
In-frame	ENST00000394667	ENST00000444610		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-3UTR	ENST00000394667	ENST00000218981		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000394667	ENST00000280056		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000394667	ENST00000490949		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
In-frame	ENST00000502534	ENST00000444610		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-3UTR	ENST00000502534	ENST00000218981		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000502534	ENST00000280056		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000502534	ENST00000490949		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
In-frame	ENST00000394665	ENST00000444610		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-3UTR	ENST00000394665	ENST00000218981		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000394665	ENST00000280056		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000394665	ENST00000490949		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
In-frame	ENST00000506397	ENST00000444610		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-3UTR	ENST00000506397	ENST00000218981		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000506397	ENST00000280056		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000506397	ENST00000490949		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
In-frame	ENST00000394668	ENST00000444610		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-3UTR	ENST00000394668	ENST00000218981		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000394668	ENST00000280056		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
5CDS-intron	ENST00000394668	ENST00000490949		TCGA	LD	BRCA	TCGA-AO-A1KS-01A	RPL34	chr4	109543360	+	DHRS12	chr13	52342432	-
In-frame	ENST00000225402	ENST00000394395		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
5CDS-intron	ENST00000225402	ENST00000586023		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
5CDS-intron	ENST00000225402	ENST00000225396		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
5CDS-intron	ENST00000225402	ENST00000417170		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
5CDS-intron	ENST00000225402	ENST00000591992		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
intron-3CDS	ENST00000590321	ENST00000394395		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
intron-intron	ENST00000590321	ENST00000586023		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
intron-intron	ENST00000590321	ENST00000225396		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
intron-intron	ENST00000590321	ENST00000417170		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
intron-intron	ENST00000590321	ENST00000591992		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	AATF	chr17	35311207	+	TADA2A	chr17	35834661	+
intron-3CDS	ENST00000269385	ENST00000429709		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
intron-3CDS	ENST00000269385	ENST00000450518		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
intron-3CDS	ENST00000269385	ENST00000392662		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
intron-3UTR	ENST00000269385	ENST00000467615		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
5UTR-3CDS	ENST00000485449	ENST00000429709		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
5UTR-3CDS	ENST00000485449	ENST00000450518		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
5UTR-3CDS	ENST00000485449	ENST00000392662		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
5UTR-3UTR	ENST00000485449	ENST00000467615		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	CBX8	chr17	77775200	-	ACTL6A	chr3	179298682	+
5CDS-5UTR	ENST00000508628	ENST00000447054		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000508628	ENST00000265022		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000508628	ENST00000344484		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000508628	ENST00000382164		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000508628	ENST00000544847		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-5UTR	ENST00000456466	ENST00000447054		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000456466	ENST00000265022		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000456466	ENST00000344484		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000456466	ENST00000382164		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000456466	ENST00000544847		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-5UTR	ENST00000582970	ENST00000447054		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000582970	ENST00000265022		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000582970	ENST00000344484		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000582970	ENST00000382164		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000582970	ENST00000544847		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-5UTR	ENST00000319921	ENST00000447054		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000319921	ENST00000265022		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000319921	ENST00000344484		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000319921	ENST00000382164		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000319921	ENST00000544847		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-5UTR	ENST00000336301	ENST00000447054		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000336301	ENST00000265022		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000336301	ENST00000344484		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000336301	ENST00000382164		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
5CDS-intron	ENST00000336301	ENST00000544847		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-5UTR	ENST00000427003	ENST00000447054		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000427003	ENST00000265022		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000427003	ENST00000344484		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000427003	ENST00000382164		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
intron-intron	ENST00000427003	ENST00000544847		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	RNF213	chr17	78346965	+	DGKG	chr3	185823731	-
Frame-shit	ENST00000245838	ENST00000371402		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	THOC2	chrX	122866802	-	RHOXF2B	chrX	119211253	-
Frame-shit	ENST00000355725	ENST00000371402		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	THOC2	chrX	122866802	-	RHOXF2B	chrX	119211253	-
intron-3CDS	ENST00000491737	ENST00000371402		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	THOC2	chrX	122866802	-	RHOXF2B	chrX	119211253	-
intron-3CDS	ENST00000497887	ENST00000371402		TCGA	LD	BRCA	TCGA-AQ-A04H-01B	THOC2	chrX	122866802	-	RHOXF2B	chrX	119211253	-
5CDS-3UTR	ENST00000326765	ENST00000477087		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	APOLD1	chr12	12879030	+	CDKN1B	chr12	12873970	+
5CDS-3UTR	ENST00000326765	ENST00000228872		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	APOLD1	chr12	12879030	+	CDKN1B	chr12	12873970	+
5CDS-intron	ENST00000326765	ENST00000396340		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	APOLD1	chr12	12879030	+	CDKN1B	chr12	12873970	+
intron-3UTR	ENST00000356591	ENST00000477087		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	APOLD1	chr12	12879030	+	CDKN1B	chr12	12873970	+
intron-3UTR	ENST00000356591	ENST00000228872		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	APOLD1	chr12	12879030	+	CDKN1B	chr12	12873970	+
intron-intron	ENST00000356591	ENST00000396340		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	APOLD1	chr12	12879030	+	CDKN1B	chr12	12873970	+
5UTR-3CDS	ENST00000476041	ENST00000377298		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
5UTR-3CDS	ENST00000476041	ENST00000361311		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
5UTR-3CDS	ENST00000476041	ENST00000377288		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
5UTR-5UTR	ENST00000476041	ENST00000477264		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
intron-3CDS	ENST00000315732	ENST00000377298		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
intron-3CDS	ENST00000315732	ENST00000361311		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
intron-3CDS	ENST00000315732	ENST00000377288		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
intron-5UTR	ENST00000315732	ENST00000477264		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	LSM10	chr1	36859367	-	CLSTN1	chr1	9790763	-
5CDS-5UTR	ENST00000262077	ENST00000367510		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	NUP153	chr6	17706508	-	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000262077	ENST00000367509		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	NUP153	chr6	17706508	-	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000537253	ENST00000367510		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	NUP153	chr6	17706508	-	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000537253	ENST00000367509		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	NUP153	chr6	17706508	-	RNF2	chr1	185056684	+
Frame-shit	ENST00000424085	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000424085	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000424085	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000424085	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000257075	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000257075	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000257075	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000257075	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373747	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373747	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373747	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000373747	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000426105	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000426105	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000426105	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000426105	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000440538	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000440538	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000440538	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000440538	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373741	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373741	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373741	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000373741	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000423018	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000423018	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000423018	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000423018	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373742	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373742	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000373742	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
5CDS-intron	ENST00000373742	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
intron-3CDS	ENST00000490546	ENST00000331302		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
intron-3CDS	ENST00000490546	ENST00000323434		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
intron-3CDS	ENST00000490546	ENST00000536489		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
intron-intron	ENST00000490546	ENST00000576001		TCGA	LD	BRCA	TCGA-AQ-A04J-01A	PUM1	chr1	31532051	-	RPH3AL	chr17	169340	-
Frame-shit	ENST00000319670	ENST00000532481		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000527134		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000304716		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000526415		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000531855		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000393427		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000525409		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000533193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000319670	ENST00000525034		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
Frame-shit	ENST00000359920	ENST00000532481		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000527134		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000304716		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000526415		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000531855		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000393427		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000525409		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000533193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000359920	ENST00000525034		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ARHGEF18	chr19	7518601	+	AAMDC	chr11	77629107	+
5UTR-3CDS	ENST00000356195	ENST00000222644		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5UTR-5UTR	ENST00000356195	ENST00000409761		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5UTR-5UTR	ENST00000356195	ENST00000396475		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
In-frame	ENST00000406877	ENST00000222644		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5CDS-5UTR	ENST00000406877	ENST00000409761		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5CDS-5UTR	ENST00000406877	ENST00000396475		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
In-frame	ENST00000373934	ENST00000222644		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5CDS-5UTR	ENST00000373934	ENST00000409761		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5CDS-5UTR	ENST00000373934	ENST00000396475		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
intron-3CDS	ENST00000465490	ENST00000222644		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
intron-5UTR	ENST00000465490	ENST00000409761		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
intron-5UTR	ENST00000465490	ENST00000396475		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDCA7L	chr7	21985399	-	MPP6	chr7	24681335	+
5UTR-3CDS	ENST00000316629	ENST00000263461		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
5UTR-3UTR	ENST00000316629	ENST00000604509		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
5UTR-3CDS	ENST00000395284	ENST00000263461		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
5UTR-3UTR	ENST00000395284	ENST00000604509		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
3UTR-3CDS	ENST00000519760	ENST00000263461		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
3UTR-3UTR	ENST00000519760	ENST00000604509		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
5UTR-3CDS	ENST00000448257	ENST00000263461		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
5UTR-3UTR	ENST00000448257	ENST00000604509		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
intron-3CDS	ENST00000373809	ENST00000263461		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
intron-3UTR	ENST00000373809	ENST00000604509		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	CDK1	chr10	62538328	+	WDR11	chr10	122659541	+
5CDS-3UTR	ENST00000521861	ENST00000254624		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-3UTR	ENST00000521861	ENST00000334503		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-3UTR	ENST00000521861	ENST00000519656		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-intron	ENST00000521861	ENST00000521940		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-3UTR	ENST00000276682	ENST00000254624		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-3UTR	ENST00000276682	ENST00000334503		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-3UTR	ENST00000276682	ENST00000519656		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
5CDS-intron	ENST00000276682	ENST00000521940		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	EIF3H	chr8	117668095	-	EFR3A	chr8	133025212	+
Frame-shit	ENST00000440973	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000440973	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000440973	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
Frame-shit	ENST00000338799	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000338799	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000338799	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
Frame-shit	ENST00000456483	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000456483	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000456483	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
Frame-shit	ENST00000443427	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000443427	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000443427	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
Frame-shit	ENST00000206249	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000206249	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000206249	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
Frame-shit	ENST00000406599	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000406599	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
5CDS-intron	ENST00000406599	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
intron-3CDS	ENST00000427531	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
intron-intron	ENST00000427531	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
intron-intron	ENST00000427531	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
intron-3CDS	ENST00000482101	ENST00000367545		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
intron-intron	ENST00000482101	ENST00000367526		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
intron-intron	ENST00000482101	ENST00000480333		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESR1	chr6	152129499	+	UTRN	chr6	144765417	+
In-frame	ENST00000251527	ENST00000310396		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
In-frame	ENST00000251527	ENST00000450913		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
5CDS-5UTR	ENST00000251527	ENST00000423795		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
5CDS-intron	ENST00000251527	ENST00000495036		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
5CDS-intron	ENST00000251527	ENST00000340646		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-3CDS	ENST00000497111	ENST00000310396		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-3CDS	ENST00000497111	ENST00000450913		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-5UTR	ENST00000497111	ENST00000423795		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-intron	ENST00000497111	ENST00000495036		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-intron	ENST00000497111	ENST00000340646		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-3CDS	ENST00000435514	ENST00000310396		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-3CDS	ENST00000435514	ENST00000450913		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-5UTR	ENST00000435514	ENST00000423795		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-intron	ENST00000435514	ENST00000495036		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
intron-intron	ENST00000435514	ENST00000340646		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ESYT2	chr7	158552177	-	CPED1	chr7	120704292	+
Frame-shit	ENST00000372188	ENST00000344157		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372188	ENST00000355665		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372188	ENST00000579690		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372188	ENST00000552105		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372188	ENST00000550485		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372187	ENST00000344157		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372187	ENST00000355665		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372187	ENST00000579690		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372187	ENST00000552105		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372187	ENST00000550485		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372185	ENST00000344157		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372185	ENST00000355665		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372185	ENST00000579690		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372185	ENST00000552105		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372185	ENST00000550485		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372181	ENST00000344157		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372181	ENST00000355665		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
Frame-shit	ENST00000372181	ENST00000579690		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372181	ENST00000552105		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
5CDS-intron	ENST00000372181	ENST00000550485		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FAM213A	chr10	82180401	+	YTHDC1	chr4	69180041	-
In-frame	ENST00000369061	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369061	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369061	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369061	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369061	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000357555	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000357555	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000357555	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000357555	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000357555	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000358487	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000358487	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000358487	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000358487	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000358487	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000356226	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000356226	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000356226	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000356226	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000356226	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000369060	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369060	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369060	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369060	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369060	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000369059	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369059	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369059	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369059	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369059	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
In-frame	ENST00000346997	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000346997	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000346997	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000346997	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000346997	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000457416	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000457416	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000457416	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000457416	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000457416	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000351936	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000351936	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000351936	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000351936	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000351936	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000360144	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000360144	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000360144	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000360144	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000360144	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
In-frame	ENST00000369056	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369056	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369056	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369056	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000369056	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-3CDS	ENST00000490349	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000490349	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000490349	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000490349	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000490349	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-3CDS	ENST00000359354	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000359354	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000359354	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000359354	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
intron-intron	ENST00000359354	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
Frame-shit	ENST00000478859	ENST00000291439		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000478859	ENST00000541844		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000478859	ENST00000590756		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000478859	ENST00000429941		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
5CDS-intron	ENST00000478859	ENST00000444449		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	FGFR2	chr10	123256046	-	AP1M1	chr19	16314270	+
In-frame	ENST00000372725	ENST00000333254		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
5CDS-intron	ENST00000372725	ENST00000497093		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
In-frame	ENST00000372724	ENST00000333254		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
5CDS-intron	ENST00000372724	ENST00000497093		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
In-frame	ENST00000287239	ENST00000333254		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
5CDS-intron	ENST00000287239	ENST00000497093		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
In-frame	ENST00000372714	ENST00000333254		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
5CDS-intron	ENST00000372714	ENST00000497093		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
In-frame	ENST00000372711	ENST00000333254		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
5CDS-intron	ENST00000372711	ENST00000497093		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
3UTR-3CDS	ENST00000490365	ENST00000333254		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
3UTR-intron	ENST00000490365	ENST00000497093		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	KAT6B	chr10	76741686	+	CCDC172	chr10	118100246	+
intron-3CDS	ENST00000448637	ENST00000351008		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	LPP	chr3	188584166	+	SPATA16	chr3	172737365	-
In-frame	ENST00000312675	ENST00000351008		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	LPP	chr3	188584166	+	SPATA16	chr3	172737365	-
In-frame	ENST00000543006	ENST00000351008		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	LPP	chr3	188584166	+	SPATA16	chr3	172737365	-
intron-3CDS	ENST00000471917	ENST00000351008		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	LPP	chr3	188584166	+	SPATA16	chr3	172737365	-
3UTR-intron	ENST00000589123	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000589123	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000589123	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000589123	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-3UTR	ENST00000589123	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000589123	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000589123	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000589123	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-3UTR	ENST00000346156	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
3UTR-intron	ENST00000346156	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-3UTR	ENST00000395111	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000395111	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-3UTR	ENST00000586919	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000586919	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-3UTR	ENST00000341919	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000341919	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-3UTR	ENST00000590282	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000590282	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-3UTR	ENST00000443272	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000443272	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000531188		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000530164		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000278572		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000534440		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-3UTR	ENST00000588839	ENST00000527446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000526608		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000524851		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
intron-intron	ENST00000588839	ENST00000529285		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	NFIC	chr19	3463200	+	RPS3	chr11	75132771	+
Frame-shit	ENST00000313367	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000313367	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000313367	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000313367	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000313367	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000313367	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000431825	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000431825	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000431825	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000431825	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000431825	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000431825	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000352860	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000352860	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000352860	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000352860	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000352860	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000352860	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000353930	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000353930	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000353930	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000353930	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000353930	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000353930	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396431	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396431	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396431	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396431	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396431	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000396431	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000409069	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000409069	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000409069	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000409069	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000409069	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000409069	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396429	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396429	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396429	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396429	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000396429	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
5CDS-intron	ENST00000396429	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
intron-3CDS	ENST00000487020	ENST00000273857		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
intron-3CDS	ENST00000487020	ENST00000508498		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
intron-3CDS	ENST00000487020	ENST00000502252		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
intron-3CDS	ENST00000487020	ENST00000505909		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
intron-3CDS	ENST00000487020	ENST00000504584		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
intron-intron	ENST00000487020	ENST00000515827		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	OSBPL3	chr7	24931996	-	CORIN	chr4	47746600	-
Frame-shit	ENST00000356341	ENST00000319670		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
Frame-shit	ENST00000356341	ENST00000359920		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
In-frame	ENST00000530617	ENST00000319670		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
In-frame	ENST00000530617	ENST00000359920		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
Frame-shit	ENST00000278568	ENST00000319670		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
Frame-shit	ENST00000278568	ENST00000359920		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
Frame-shit	ENST00000528203	ENST00000319670		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
Frame-shit	ENST00000528203	ENST00000359920		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
5UTR-3CDS	ENST00000525542	ENST00000319670		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
5UTR-3CDS	ENST00000525542	ENST00000359920		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PAK1	chr11	77043775	-	ARHGEF18	chr19	7521213	+
Frame-shit	ENST00000269919	ENST00000535193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000269919	ENST00000543771		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000269919	ENST00000381306		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000269919	ENST00000381309		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000269919	ENST00000442236		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000269919	ENST00000489243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000269919	ENST00000536108		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000269919	ENST00000428870		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000269919	ENST00000401787		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000604499	ENST00000535193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000604499	ENST00000543771		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000604499	ENST00000381306		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000604499	ENST00000381309		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000604499	ENST00000442236		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000604499	ENST00000489243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000604499	ENST00000536108		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000604499	ENST00000428870		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000604499	ENST00000401787		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
In-frame	ENST00000595066	ENST00000535193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
In-frame	ENST00000595066	ENST00000543771		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
In-frame	ENST00000595066	ENST00000381306		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
In-frame	ENST00000595066	ENST00000381309		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
In-frame	ENST00000595066	ENST00000442236		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000595066	ENST00000489243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000595066	ENST00000536108		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000595066	ENST00000428870		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000595066	ENST00000401787		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000252813	ENST00000535193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000252813	ENST00000543771		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000252813	ENST00000381306		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000252813	ENST00000381309		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000252813	ENST00000442236		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000252813	ENST00000489243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000252813	ENST00000536108		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000252813	ENST00000428870		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
5CDS-intron	ENST00000252813	ENST00000401787		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-3CDS	ENST00000597431	ENST00000535193		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-3CDS	ENST00000597431	ENST00000543771		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-3CDS	ENST00000597431	ENST00000381306		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-3CDS	ENST00000597431	ENST00000381309		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-3CDS	ENST00000597431	ENST00000442236		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-intron	ENST00000597431	ENST00000489243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-intron	ENST00000597431	ENST00000536108		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-intron	ENST00000597431	ENST00000428870		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
intron-intron	ENST00000597431	ENST00000401787		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	PGPEP1	chr19	18468425	+	KDM4C	chr9	7011698	+
Frame-shit	ENST00000439268	ENST00000335312		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000439268	ENST00000539785		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000439268	ENST00000589578		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000439268	ENST00000537021		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5CDS-5UTR	ENST00000439268	ENST00000587482		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000340578	ENST00000335312		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000340578	ENST00000539785		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000340578	ENST00000589578		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000340578	ENST00000537021		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5CDS-5UTR	ENST00000340578	ENST00000587482		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000541471	ENST00000335312		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000541471	ENST00000539785		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000541471	ENST00000589578		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000541471	ENST00000537021		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5CDS-5UTR	ENST00000541471	ENST00000587482		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000591092	ENST00000335312		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000591092	ENST00000539785		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000591092	ENST00000589578		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000591092	ENST00000537021		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5CDS-5UTR	ENST00000591092	ENST00000587482		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000034275	ENST00000335312		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000034275	ENST00000539785		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000034275	ENST00000589578		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
Frame-shit	ENST00000034275	ENST00000537021		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5CDS-5UTR	ENST00000034275	ENST00000587482		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5UTR-3CDS	ENST00000591124	ENST00000335312		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5UTR-3CDS	ENST00000591124	ENST00000539785		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5UTR-3CDS	ENST00000591124	ENST00000589578		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5UTR-3CDS	ENST00000591124	ENST00000537021		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5UTR-5UTR	ENST00000591124	ENST00000587482		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	RANBP3	chr19	5978072	-	PIP5K1C	chr19	3667351	-
5UTR-3CDS	ENST00000375715	ENST00000550433		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000548513		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000549446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000298972		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000341669		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000350228		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000540018		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000375715	ENST00000393288		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
5UTR-intron	ENST00000375715	ENST00000548243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000550433		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000548513		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000549446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000298972		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000341669		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000350228		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000540018		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000375708	ENST00000393288		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000375708	ENST00000548243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000550433		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000548513		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000549446		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000298972		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000341669		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000350228		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000540018		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550066	ENST00000393288		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000550066	ENST00000548243		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	ROR2	chr9	94710889	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000585748	ENST00000264818		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
intron-3CDS	ENST00000585748	ENST00000524462		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
intron-3CDS	ENST00000585748	ENST00000525621		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
intron-3CDS	ENST00000585748	ENST00000529370		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
intron-intron	ENST00000585748	ENST00000529422		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
In-frame	ENST00000326873	ENST00000264818		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
In-frame	ENST00000326873	ENST00000524462		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
In-frame	ENST00000326873	ENST00000525621		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
In-frame	ENST00000326873	ENST00000529370		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
5CDS-intron	ENST00000326873	ENST00000529422		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	STK11	chr19	1207202	+	TYK2	chr19	10473333	-
In-frame	ENST00000311160	ENST00000323037		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
5CDS-intron	ENST00000311160	ENST00000459998		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
In-frame	ENST00000355730	ENST00000323037		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
5CDS-intron	ENST00000355730	ENST00000459998		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
In-frame	ENST00000398879	ENST00000323037		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
5CDS-intron	ENST00000398879	ENST00000459998		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
In-frame	ENST00000442536	ENST00000323037		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
5CDS-intron	ENST00000442536	ENST00000459998		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
In-frame	ENST00000458317	ENST00000323037		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
5CDS-intron	ENST00000458317	ENST00000459998		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
intron-3CDS	ENST00000474346	ENST00000323037		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
intron-intron	ENST00000474346	ENST00000459998		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	TNS3	chr7	47474880	-	ZNRF2	chr7	30401993	+
Frame-shit	ENST00000367545	ENST00000330636		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
In-frame	ENST00000367545	ENST00000468929		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
5CDS-3UTR	ENST00000367545	ENST00000464010		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000367545	ENST00000480566		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000367545	ENST00000500576		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000367545	ENST00000606472		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000367526	ENST00000330636		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000367526	ENST00000468929		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3UTR	ENST00000367526	ENST00000464010		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000367526	ENST00000480566		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000367526	ENST00000500576		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000367526	ENST00000606472		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000480333	ENST00000330636		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000480333	ENST00000468929		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3UTR	ENST00000480333	ENST00000464010		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000480333	ENST00000480566		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000480333	ENST00000500576		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000480333	ENST00000606472		TCGA	LD	BRCA	TCGA-AQ-A04L-01B	UTRN	chr6	144795895	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000263377	ENST00000318003		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
intron-3CDS	ENST00000263377	ENST00000589606		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
intron-3CDS	ENST00000371835	ENST00000318003		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
intron-3CDS	ENST00000371835	ENST00000589606		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
5UTR-3CDS	ENST00000360016	ENST00000318003		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
5UTR-3CDS	ENST00000360016	ENST00000589606		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
intron-3CDS	ENST00000602230	ENST00000318003		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
intron-3CDS	ENST00000602230	ENST00000589606		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	BRD4	chr19	15443101	-	CC2D1A	chr19	14023136	+
Frame-shit	ENST00000540746	ENST00000252699		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
Frame-shit	ENST00000540746	ENST00000424234		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000540746	ENST00000390009		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000540746	ENST00000497637		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
Frame-shit	ENST00000544216	ENST00000252699		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
Frame-shit	ENST00000544216	ENST00000424234		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000544216	ENST00000390009		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000544216	ENST00000497637		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
Frame-shit	ENST00000433627	ENST00000252699		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
Frame-shit	ENST00000433627	ENST00000424234		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000433627	ENST00000390009		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000433627	ENST00000497637		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	LSM14A	chr19	34663668	+	ACTN4	chr19	39191240	+
Frame-shit	ENST00000262948	ENST00000381769		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-5UTR	ENST00000262948	ENST00000348335		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-5UTR	ENST00000262948	ENST00000381771		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-5UTR	ENST00000262948	ENST00000158166		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
Frame-shit	ENST00000394867	ENST00000381769		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-5UTR	ENST00000394867	ENST00000348335		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-5UTR	ENST00000394867	ENST00000381771		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-5UTR	ENST00000394867	ENST00000158166		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5UTR-3CDS	ENST00000599345	ENST00000381769		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5UTR-5UTR	ENST00000599345	ENST00000348335		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5UTR-5UTR	ENST00000599345	ENST00000381771		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5UTR-5UTR	ENST00000599345	ENST00000158166		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MAP2K2	chr19	4110507	-	CAMKK1	chr17	3789024	-
5CDS-3UTR	ENST00000262065	ENST00000425901		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MMD	chr17	53485107	-	LRRC37A11P	chr17	37200641	+
intron-3UTR	ENST00000577038	ENST00000425901		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	MMD	chr17	53485107	-	LRRC37A11P	chr17	37200641	+
intron-3CDS	ENST00000371471	ENST00000589222		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000371471	ENST00000407086		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000371471	ENST00000390652		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000371471	ENST00000408905		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000371471	ENST00000588462		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000371471	ENST00000585744		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000371471	ENST00000588874		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3UTR	ENST00000371471	ENST00000585812		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000589222		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000407086		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000390652		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000408905		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000588462		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000585744		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000302342	ENST00000588874		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
intron-3UTR	ENST00000302342	ENST00000585812		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000589222		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000407086		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000390652		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000408905		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000588462		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000585744		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000540425	ENST00000588874		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5UTR-3UTR	ENST00000540425	ENST00000585812		TCGA	LD	BRCA	TCGA-AQ-A0Y5-01A	ZNF217	chr20	52214170	-	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000268719	ENST00000353383		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
5CDS-intron	ENST00000268719	ENST00000489697		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
5CDS-intron	ENST00000268719	ENST00000261641		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
5CDS-3UTR	ENST00000376345	ENST00000353383		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
5CDS-intron	ENST00000376345	ENST00000489697		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
5CDS-intron	ENST00000376345	ENST00000261641		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
intron-3UTR	ENST00000579871	ENST00000353383		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
intron-intron	ENST00000579871	ENST00000489697		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
intron-intron	ENST00000579871	ENST00000261641		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	GID4	chr17	17948520	+	RAI1	chr17	17714048	+
Frame-shit	ENST00000310441	ENST00000369980		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000310441	ENST00000369974		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000310441	ENST00000393682		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000310441	ENST00000477274		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000310441	ENST00000429936		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000310441	ENST00000393687		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000369984	ENST00000369980		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000369984	ENST00000369974		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000369984	ENST00000393682		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000369984	ENST00000477274		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000369984	ENST00000429936		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000369984	ENST00000393687		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000354233	ENST00000369980		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000354233	ENST00000369974		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
Frame-shit	ENST00000354233	ENST00000393682		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000354233	ENST00000477274		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000354233	ENST00000429936		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
5CDS-5UTR	ENST00000354233	ENST00000393687		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-3CDS	ENST00000461098	ENST00000369980		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-3CDS	ENST00000461098	ENST00000369974		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-3CDS	ENST00000461098	ENST00000393682		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-5UTR	ENST00000461098	ENST00000477274		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-5UTR	ENST00000461098	ENST00000429936		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-5UTR	ENST00000461098	ENST00000393687		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	HCFC1	chrX	153216264	-	IRAK1	chrX	153283571	-
intron-5UTR	ENST00000377122	ENST00000449193		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377122	ENST00000444772		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377122	ENST00000487107		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000417816	ENST00000449193		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000417816	ENST00000444772		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000417816	ENST00000487107		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377159	ENST00000449193		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377159	ENST00000444772		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377159	ENST00000487107		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377119	ENST00000449193		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377119	ENST00000444772		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377119	ENST00000487107		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000464278	ENST00000449193		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000464278	ENST00000444772		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000464278	ENST00000487107		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	NEBL	chr10	21461312	-	SKIDA1	chr10	21812800	-
5UTR-3CDS	ENST00000565677	ENST00000535977		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
5UTR-3CDS	ENST00000565677	ENST00000539661		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
5UTR-3CDS	ENST00000565677	ENST00000538492		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
5UTR-3CDS	ENST00000565677	ENST00000248139		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
In-frame	ENST00000219548	ENST00000535977		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
In-frame	ENST00000219548	ENST00000539661		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
In-frame	ENST00000219548	ENST00000538492		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
In-frame	ENST00000219548	ENST00000248139		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000564370	ENST00000535977		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000564370	ENST00000539661		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000564370	ENST00000538492		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000564370	ENST00000248139		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000566181	ENST00000535977		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000566181	ENST00000539661		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000566181	ENST00000538492		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
intron-3CDS	ENST00000566181	ENST00000248139		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	STUB1	chr16	730684	+	RAB40C	chr16	675432	+
Frame-shit	ENST00000372676	ENST00000243924		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	WFDC2	chr20	44099172	+	PI3	chr20	43804502	+
Frame-shit	ENST00000217425	ENST00000243924		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	WFDC2	chr20	44099172	+	PI3	chr20	43804502	+
intron-3CDS	ENST00000339946	ENST00000243924		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	WFDC2	chr20	44099172	+	PI3	chr20	43804502	+
intron-3CDS	ENST00000488143	ENST00000243924		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	WFDC2	chr20	44099172	+	PI3	chr20	43804502	+
intron-3CDS	ENST00000342873	ENST00000243924		TCGA	LD	BRCA	TCGA-AQ-A54N-01A	WFDC2	chr20	44099172	+	PI3	chr20	43804502	+
In-frame	ENST00000515408	ENST00000379638		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
In-frame	ENST00000515408	ENST00000513339		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
Frame-shit	ENST00000515408	ENST00000545426		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5CDS-5UTR	ENST00000515408	ENST00000474542		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5CDS-intron	ENST00000515408	ENST00000504247		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
In-frame	ENST00000389063	ENST00000379638		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
In-frame	ENST00000389063	ENST00000513339		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
Frame-shit	ENST00000389063	ENST00000545426		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5CDS-5UTR	ENST00000389063	ENST00000474542		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5CDS-intron	ENST00000389063	ENST00000504247		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5UTR-3CDS	ENST00000543319	ENST00000379638		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5UTR-3CDS	ENST00000543319	ENST00000513339		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5UTR-3CDS	ENST00000543319	ENST00000545426		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5UTR-5UTR	ENST00000543319	ENST00000474542		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
5UTR-intron	ENST00000543319	ENST00000504247		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
3UTR-3CDS	ENST00000504961	ENST00000379638		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
3UTR-3CDS	ENST00000504961	ENST00000513339		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
3UTR-3CDS	ENST00000504961	ENST00000545426		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
3UTR-5UTR	ENST00000504961	ENST00000474542		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
3UTR-intron	ENST00000504961	ENST00000504247		TCGA	LD	BRCA	TCGA-AQ-A54O-01A	DCP2	chr5	112312683	+	REEP5	chr5	112238215	-
Frame-shit	ENST00000393784	ENST00000507386		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
Frame-shit	ENST00000393784	ENST00000265272		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
Frame-shit	ENST00000393784	ENST00000333010		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
3UTR-3CDS	ENST00000519860	ENST00000507386		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
3UTR-3CDS	ENST00000519860	ENST00000265272		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
3UTR-3CDS	ENST00000519860	ENST00000333010		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
Frame-shit	ENST00000523291	ENST00000507386		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
Frame-shit	ENST00000523291	ENST00000265272		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
Frame-shit	ENST00000523291	ENST00000333010		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
intron-3CDS	ENST00000326654	ENST00000507386		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
intron-3CDS	ENST00000326654	ENST00000265272		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
intron-3CDS	ENST00000326654	ENST00000333010		TCGA	LD	BRCA	TCGA-AQ-A7U7-01A	ERGIC1	chr5	172261436	+	JAKMIP2	chr5	146991934	-
In-frame	ENST00000495514	ENST00000492406		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
5CDS-3UTR	ENST00000495514	ENST00000460713		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
In-frame	ENST00000273395	ENST00000492406		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
5CDS-3UTR	ENST00000273395	ENST00000460713		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
In-frame	ENST00000355385	ENST00000492406		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
5CDS-3UTR	ENST00000355385	ENST00000460713		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
Frame-shit	ENST00000485230	ENST00000492406		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
5CDS-3UTR	ENST00000485230	ENST00000460713		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
In-frame	ENST00000484034	ENST00000492406		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
5CDS-3UTR	ENST00000484034	ENST00000460713		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
intron-3CDS	ENST00000497495	ENST00000492406		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
intron-3UTR	ENST00000497495	ENST00000460713		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	BOC	chr3	112969680	+	SLC35A5	chr3	112288018	+
Frame-shit	ENST00000342505	ENST00000352645		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	JAK1	chr1	65312332	-	ZC3H7B	chr22	41739419	+
Frame-shit	ENST00000342505	ENST00000351589		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	JAK1	chr1	65312332	-	ZC3H7B	chr22	41739419	+
5UTR-3CDS	ENST00000465376	ENST00000352645		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	JAK1	chr1	65312332	-	ZC3H7B	chr22	41739419	+
5UTR-3CDS	ENST00000465376	ENST00000351589		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	JAK1	chr1	65312332	-	ZC3H7B	chr22	41739419	+
intron-3CDS	ENST00000342085	ENST00000397066		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588772	+	CCNF	chr16	2495459	+
intron-3CDS	ENST00000441549	ENST00000397066		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588772	+	CCNF	chr16	2495459	+
intron-3CDS	ENST00000268673	ENST00000397066		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588772	+	CCNF	chr16	2495459	+
intron-3CDS	ENST00000354836	ENST00000397066		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588772	+	CCNF	chr16	2495459	+
5UTR-3CDS	ENST00000389224	ENST00000397066		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588772	+	CCNF	chr16	2495459	+
intron-3CDS	ENST00000471311	ENST00000397066		TCGA	LD	BRCA	TCGA-AR-A0TP-01A	PDPK1	chr16	2588772	+	CCNF	chr16	2495459	+
In-frame	ENST00000259008	ENST00000262013		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
In-frame	ENST00000259008	ENST00000505279		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
In-frame	ENST00000259008	ENST00000357122		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000259008	ENST00000509724		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000259008	ENST00000510283		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
Frame-shit	ENST00000577598	ENST00000262013		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
Frame-shit	ENST00000577598	ENST00000505279		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
Frame-shit	ENST00000577598	ENST00000357122		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000577598	ENST00000509724		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000577598	ENST00000510283		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
intron-3CDS	ENST00000583837	ENST00000262013		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
intron-3CDS	ENST00000583837	ENST00000505279		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
intron-3CDS	ENST00000583837	ENST00000357122		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
intron-intron	ENST00000583837	ENST00000509724		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
intron-intron	ENST00000583837	ENST00000510283		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	BRIP1	chr17	59934419	-	SPAG9	chr17	49157065	-
In-frame	ENST00000309156	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000309156	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
5CDS-intron	ENST00000309156	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000309185	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000309185	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
5CDS-intron	ENST00000309185	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000394211	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000394211	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
5CDS-intron	ENST00000394211	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
intron-3CDS	ENST00000578702	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
intron-3CDS	ENST00000578702	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
intron-intron	ENST00000578702	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000445327	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000445327	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
5CDS-intron	ENST00000445327	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000394209	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000394209	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
5CDS-intron	ENST00000394209	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000394204	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000394204	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
5CDS-intron	ENST00000394204	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	GRB7	chr17	37902041	+	BRIP1	chr17	59934592	-
In-frame	ENST00000382004	ENST00000341998		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
In-frame	ENST00000382004	ENST00000286344		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
In-frame	ENST00000358730	ENST00000341998		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
In-frame	ENST00000358730	ENST00000286344		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
In-frame	ENST00000302303	ENST00000341998		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
In-frame	ENST00000302303	ENST00000286344		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
intron-3CDS	ENST00000381984	ENST00000341998		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
intron-3CDS	ENST00000381984	ENST00000286344		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RFX3	chr9	3330259	-	SLC24A2	chr9	19622297	-
In-frame	ENST00000244061	ENST00000371621		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RNF114	chr20	48565892	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000244061	ENST00000541713		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	RNF114	chr20	48565892	+	PTPN1	chr20	49177900	+
In-frame	ENST00000262013	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
In-frame	ENST00000262013	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
5CDS-intron	ENST00000262013	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
In-frame	ENST00000505279	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
In-frame	ENST00000505279	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
5CDS-intron	ENST00000505279	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
In-frame	ENST00000357122	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
In-frame	ENST00000357122	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
5CDS-intron	ENST00000357122	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
intron-3CDS	ENST00000509724	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
intron-3CDS	ENST00000509724	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
intron-intron	ENST00000509724	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
intron-3CDS	ENST00000510283	ENST00000259008		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
intron-3CDS	ENST00000510283	ENST00000577598		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
intron-intron	ENST00000510283	ENST00000583837		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	BRIP1	chr17	59924581	-
5CDS-5UTR	ENST00000262013	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000262013	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000262013	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000262013	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-intron	ENST00000262013	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000505279	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000505279	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000505279	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000505279	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-intron	ENST00000505279	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000357122	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000357122	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000357122	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-5UTR	ENST00000357122	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
5CDS-intron	ENST00000357122	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000509724	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000509724	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000509724	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000509724	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-intron	ENST00000509724	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000510283	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000510283	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000510283	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000510283	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
intron-intron	ENST00000510283	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	SPAG9	chr17	49133773	-	TADA2A	chr17	35771356	+
Frame-shit	ENST00000394395	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000394395	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000394395	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000394395	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000394395	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000394395	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
Frame-shit	ENST00000586023	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000586023	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000586023	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000586023	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000586023	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000586023	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
Frame-shit	ENST00000225396	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000225396	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000225396	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000225396	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000225396	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000225396	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
Frame-shit	ENST00000417170	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000417170	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000417170	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000417170	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000417170	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000417170	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
3UTR-3CDS	ENST00000591992	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
3UTR-intron	ENST00000591992	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
3UTR-intron	ENST00000591992	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
3UTR-intron	ENST00000591992	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
3UTR-intron	ENST00000591992	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
3UTR-5UTR	ENST00000591992	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TADA2A	chr17	35818689	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000369996	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
5CDS-intron	ENST00000369996	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A0TQ-01A	TNFRSF6B	chr20	62328523	+	IKZF3	chr17	37916306	-
Frame-shit	ENST00000426836	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000426836	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000426836	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000426836	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
Frame-shit	ENST00000373745	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373745	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373745	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373745	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
In-frame	ENST00000373740	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373740	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373740	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373740	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
Frame-shit	ENST00000448110	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000448110	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000448110	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000448110	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5UTR-3CDS	ENST00000473615	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5UTR-intron	ENST00000473615	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5UTR-intron	ENST00000473615	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5UTR-intron	ENST00000473615	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
In-frame	ENST00000373750	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373750	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373750	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373750	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
In-frame	ENST00000373734	ENST00000237536		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373734	ENST00000279034		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373734	ENST00000456801		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
5CDS-intron	ENST00000373734	ENST00000357779		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	DSN1	chr20	35383166	-	SOGA1	chr20	35415040	-
In-frame	ENST00000343882	ENST00000433360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000343882	ENST00000340694		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000343882	ENST00000424654		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000343882	ENST00000433881		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000343882	ENST00000289495		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000343882	ENST00000456331		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000406360	ENST00000433360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000406360	ENST00000340694		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000406360	ENST00000424654		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000406360	ENST00000433881		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000406360	ENST00000289495		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
In-frame	ENST00000406360	ENST00000456331		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
intron-3CDS	ENST00000540898	ENST00000433360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
intron-3CDS	ENST00000540898	ENST00000340694		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
intron-3CDS	ENST00000540898	ENST00000424654		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
intron-3CDS	ENST00000540898	ENST00000433881		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
intron-3CDS	ENST00000540898	ENST00000289495		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
intron-3CDS	ENST00000540898	ENST00000456331		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	FOXO3	chr6	108883032	+	PPP1R9A	chr7	94876785	+
5CDS-intron	ENST00000373062	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	GNL2	chr1	38061360	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000373062	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	GNL2	chr1	38061360	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000373062	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	GNL2	chr1	38061360	-	DNAH3	chr16	21128660	-
intron-intron	ENST00000462812	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	GNL2	chr1	38061360	-	DNAH3	chr16	21128660	-
intron-intron	ENST00000462812	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	GNL2	chr1	38061360	-	DNAH3	chr16	21128660	-
intron-intron	ENST00000462812	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	GNL2	chr1	38061360	-	DNAH3	chr16	21128660	-
In-frame	ENST00000398081	ENST00000340648		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PDXK	chr21	45154004	+	RRP1B	chr21	45089765	+
In-frame	ENST00000468090	ENST00000340648		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PDXK	chr21	45154004	+	RRP1B	chr21	45089765	+
In-frame	ENST00000291565	ENST00000340648		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PDXK	chr21	45154004	+	RRP1B	chr21	45089765	+
In-frame	ENST00000327574	ENST00000340648		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PDXK	chr21	45154004	+	RRP1B	chr21	45089765	+
3UTR-3CDS	ENST00000476313	ENST00000340648		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PDXK	chr21	45154004	+	RRP1B	chr21	45089765	+
intron-3CDS	ENST00000467908	ENST00000340648		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PDXK	chr21	45154004	+	RRP1B	chr21	45089765	+
Frame-shit	ENST00000433360	ENST00000343882		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000433360	ENST00000406360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
5CDS-5UTR	ENST00000433360	ENST00000540898		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000340694	ENST00000343882		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000340694	ENST00000406360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
5CDS-5UTR	ENST00000340694	ENST00000540898		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000424654	ENST00000343882		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000424654	ENST00000406360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
5CDS-5UTR	ENST00000424654	ENST00000540898		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000433881	ENST00000343882		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000433881	ENST00000406360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
5CDS-5UTR	ENST00000433881	ENST00000540898		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000289495	ENST00000343882		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000289495	ENST00000406360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
5CDS-5UTR	ENST00000289495	ENST00000540898		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000456331	ENST00000343882		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
Frame-shit	ENST00000456331	ENST00000406360		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
5CDS-5UTR	ENST00000456331	ENST00000540898		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	PPP1R9A	chr7	94855428	+	FOXO3	chr6	108984658	+
In-frame	ENST00000450554	ENST00000337907		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000450554	ENST00000377464		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000450554	ENST00000400907		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000450554	ENST00000400908		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
5CDS-5UTR	ENST00000450554	ENST00000476556		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
5CDS-5UTR	ENST00000450554	ENST00000460659		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000308924	ENST00000337907		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000308924	ENST00000377464		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000308924	ENST00000400907		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
In-frame	ENST00000308924	ENST00000400908		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
5CDS-5UTR	ENST00000308924	ENST00000476556		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
5CDS-5UTR	ENST00000308924	ENST00000460659		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
intron-3CDS	ENST00000590551	ENST00000337907		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
intron-3CDS	ENST00000590551	ENST00000377464		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
intron-3CDS	ENST00000590551	ENST00000400907		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
intron-3CDS	ENST00000590551	ENST00000400908		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
intron-5UTR	ENST00000590551	ENST00000476556		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
intron-5UTR	ENST00000590551	ENST00000460659		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	U2AF2	chr19	56172555	+	RERE	chr1	8426034	-
Frame-shit	ENST00000273038	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000273038	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000273038	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000273038	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000273038	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000273038	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000430365	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000430365	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000430365	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000430365	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000430365	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000430365	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5UTR-3CDS	ENST00000404339	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5UTR-3CDS	ENST00000404339	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5UTR-3CDS	ENST00000404339	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5UTR-3UTR	ENST00000404339	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5UTR-3UTR	ENST00000404339	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
5UTR-3UTR	ENST00000404339	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000480288	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000480288	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000480288	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000480288	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000480288	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000480288	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000413604	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000413604	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000413604	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000413604	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000413604	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000413604	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000451674	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000451674	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000451674	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000451674	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000451674	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000451674	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000424529	ENST00000478300		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000424529	ENST00000295894		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000424529	ENST00000479198		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000424529	ENST00000478744		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000424529	ENST00000460711		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000424529	ENST00000465156		TCGA	LD	BRCA	TCGA-AR-A0TS-01A	VGLL4	chr3	11744445	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000397410	ENST00000450662		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8L	chr19	15507961	-	EFCAB3	chr17	60472429	+
Frame-shit	ENST00000397410	ENST00000305286		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8L	chr19	15507961	-	EFCAB3	chr17	60472429	+
Frame-shit	ENST00000595465	ENST00000450662		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8L	chr19	15507961	-	EFCAB3	chr17	60472429	+
Frame-shit	ENST00000595465	ENST00000305286		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8L	chr19	15507961	-	EFCAB3	chr17	60472429	+
intron-3CDS	ENST00000595879	ENST00000450662		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8L	chr19	15507961	-	EFCAB3	chr17	60472429	+
intron-3CDS	ENST00000595879	ENST00000305286		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8L	chr19	15507961	-	EFCAB3	chr17	60472429	+
5CDS-5UTR	ENST00000269701	ENST00000595618		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8	chr19	15490524	-	MYO9B	chr19	17212470	+
5CDS-5UTR	ENST00000269701	ENST00000594824		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8	chr19	15490524	-	MYO9B	chr19	17212470	+
5CDS-5UTR	ENST00000269701	ENST00000397274		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8	chr19	15490524	-	MYO9B	chr19	17212470	+
5CDS-intron	ENST00000269701	ENST00000593411		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	AKAP8	chr19	15490524	-	MYO9B	chr19	17212470	+
Frame-shit	ENST00000368346	ENST00000354422		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ASH1L	chr1	155365250	-	FAM78B	chr1	166040000	-
In-frame	ENST00000368346	ENST00000338353		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ASH1L	chr1	155365250	-	FAM78B	chr1	166040000	-
Frame-shit	ENST00000392403	ENST00000354422		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ASH1L	chr1	155365250	-	FAM78B	chr1	166040000	-
In-frame	ENST00000392403	ENST00000338353		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ASH1L	chr1	155365250	-	FAM78B	chr1	166040000	-
intron-3CDS	ENST00000548830	ENST00000354422		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ASH1L	chr1	155365250	-	FAM78B	chr1	166040000	-
intron-3CDS	ENST00000548830	ENST00000338353		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ASH1L	chr1	155365250	-	FAM78B	chr1	166040000	-
In-frame	ENST00000367807	ENST00000367846		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	BLZF1	chr1	169338788	+	MPC2	chr1	167893775	-
In-frame	ENST00000367807	ENST00000271373		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	BLZF1	chr1	169338788	+	MPC2	chr1	167893775	-
In-frame	ENST00000367808	ENST00000367846		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	BLZF1	chr1	169338788	+	MPC2	chr1	167893775	-
In-frame	ENST00000367808	ENST00000271373		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	BLZF1	chr1	169338788	+	MPC2	chr1	167893775	-
In-frame	ENST00000329281	ENST00000367846		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	BLZF1	chr1	169338788	+	MPC2	chr1	167893775	-
In-frame	ENST00000329281	ENST00000271373		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	BLZF1	chr1	169338788	+	MPC2	chr1	167893775	-
5CDS-intron	ENST00000556440	ENST00000443584		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000556440	ENST00000449996		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000556440	ENST00000262406		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000556440	ENST00000577186		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000553412	ENST00000443584		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000553412	ENST00000449996		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000553412	ENST00000262406		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
5CDS-intron	ENST00000553412	ENST00000577186		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
intron-intron	ENST00000581056	ENST00000443584		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
intron-intron	ENST00000581056	ENST00000449996		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
intron-intron	ENST00000581056	ENST00000262406		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
intron-intron	ENST00000581056	ENST00000577186		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
3UTR-intron	ENST00000577476	ENST00000443584		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
3UTR-intron	ENST00000577476	ENST00000449996		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
3UTR-intron	ENST00000577476	ENST00000262406		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
3UTR-intron	ENST00000577476	ENST00000577186		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	CEP95	chr17	62522317	+	RGS9	chr17	63113172	+
Frame-shit	ENST00000359866	ENST00000538566		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DDA1	chr19	17420466	+	TMIGD1	chr17	28656547	-
Frame-shit	ENST00000359866	ENST00000328886		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DDA1	chr19	17420466	+	TMIGD1	chr17	28656547	-
In-frame	ENST00000367943	ENST00000367302		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
In-frame	ENST00000367943	ENST00000367296		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
In-frame	ENST00000367943	ENST00000295624		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
In-frame	ENST00000367943	ENST00000367297		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
In-frame	ENST00000367943	ENST00000367300		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
In-frame	ENST00000367943	ENST00000367295		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
5CDS-intron	ENST00000367943	ENST00000469130		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	DUSP12	chr1	161719935	+	NAV1	chr1	201749549	+
5CDS-5UTR	ENST00000556931	ENST00000368002		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000556931	ENST00000289865		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000556931	ENST00000368001		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-intron	ENST00000556931	ENST00000493054		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000505139	ENST00000368002		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000505139	ENST00000289865		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000505139	ENST00000368001		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-intron	ENST00000505139	ENST00000493054		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000368408	ENST00000368002		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000368408	ENST00000289865		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000368408	ENST00000368001		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-intron	ENST00000368408	ENST00000493054		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
intron-5UTR	ENST00000418360	ENST00000368002		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
intron-5UTR	ENST00000418360	ENST00000289865		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
intron-5UTR	ENST00000418360	ENST00000368001		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
intron-intron	ENST00000418360	ENST00000493054		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
3UTR-5UTR	ENST00000498667	ENST00000368002		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
3UTR-5UTR	ENST00000498667	ENST00000289865		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
3UTR-5UTR	ENST00000498667	ENST00000368001		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
3UTR-intron	ENST00000498667	ENST00000493054		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EFNA3	chr1	155058681	+	USP21	chr1	161130410	+
5CDS-5UTR	ENST00000366641	ENST00000391860		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000366641	ENST00000321327		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000366641	ENST00000525115		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
5CDS-intron	ENST00000366641	ENST00000530424		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
intron-5UTR	ENST00000476717	ENST00000391860		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
intron-5UTR	ENST00000476717	ENST00000321327		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
intron-5UTR	ENST00000476717	ENST00000525115		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
intron-intron	ENST00000476717	ENST00000530424		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	EGLN1	chr1	231556744	-	PGBD5	chr1	230493067	-
In-frame	ENST00000368594	ENST00000398309		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
In-frame	ENST00000368594	ENST00000376104		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000418306		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000280241		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000543673		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000376106		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000330014		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000537455		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000524982		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000532653		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000531015		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000398301		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000426717		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000404783		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000398304		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000530800		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368594	ENST00000472545		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
In-frame	ENST00000368593	ENST00000398309		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
In-frame	ENST00000368593	ENST00000376104		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000418306		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000280241		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000543673		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000376106		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000330014		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000537455		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000524982		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000532653		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000531015		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000398301		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000426717		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000404783		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000398304		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000530800		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000368593	ENST00000472545		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-3CDS	ENST00000487614	ENST00000398309		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-3CDS	ENST00000487614	ENST00000376104		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000418306		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000280241		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000543673		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000376106		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000330014		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000537455		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000524982		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000532653		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000531015		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000398301		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000426717		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000404783		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000398304		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000530800		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
intron-intron	ENST00000487614	ENST00000472545		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	INPP5A	chr10	134464009	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000293405	ENST00000452733		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	IZUMO2	chr19	50661525	-	CYTH2	chr19	48975582	+
Frame-shit	ENST00000293405	ENST00000427476		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	IZUMO2	chr19	50661525	-	CYTH2	chr19	48975582	+
5CDS-5UTR	ENST00000378526	ENST00000540691		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000539106		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000222307		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000378526	ENST00000600796		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000601630		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000599000		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000595073		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000599319		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000602094		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000378526	ENST00000598830		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000540691		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000539106		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000222307		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-intron	ENST00000262327	ENST00000600796		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000601630		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000599000		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000595073		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000599319		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000602094		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
5CDS-5UTR	ENST00000262327	ENST00000598830		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000540691		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000539106		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000222307		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-intron	ENST00000586407	ENST00000600796		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000601630		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000599000		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000595073		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000599319		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000602094		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
3UTR-5UTR	ENST00000586407	ENST00000598830		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	LIG3	chr17	33313150	+	KXD1	chr19	18672846	+
In-frame	ENST00000360128	ENST00000325203		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MAK16	chr8	33347857	+	ANGPT2	chr8	6390008	-
In-frame	ENST00000360128	ENST00000415216		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MAK16	chr8	33347857	+	ANGPT2	chr8	6390008	-
5CDS-intron	ENST00000360128	ENST00000338312		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MAK16	chr8	33347857	+	ANGPT2	chr8	6390008	-
5CDS-intron	ENST00000360128	ENST00000523120		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MAK16	chr8	33347857	+	ANGPT2	chr8	6390008	-
In-frame	ENST00000373036	ENST00000373019		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38435407	-
In-frame	ENST00000373036	ENST00000448721		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38435407	-
5CDS-intron	ENST00000373036	ENST00000489537		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000468190	ENST00000373019		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000468190	ENST00000448721		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38435407	-
intron-intron	ENST00000468190	ENST00000489537		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38435407	-
Frame-shit	ENST00000222345	ENST00000292147		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	SIPA1L3	chr19	38655546	+	ETHE1	chr19	44015718	-
Frame-shit	ENST00000222345	ENST00000600651		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	SIPA1L3	chr19	38655546	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000476317	ENST00000292147		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	SIPA1L3	chr19	38655546	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000476317	ENST00000600651		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	SIPA1L3	chr19	38655546	+	ETHE1	chr19	44015718	-
Frame-shit	ENST00000292211	ENST00000367872		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	UBE2Q1	chr1	154525212	-	MAEL	chr1	166974313	+
Frame-shit	ENST00000292211	ENST00000367870		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	UBE2Q1	chr1	154525212	-	MAEL	chr1	166974313	+
5CDS-3UTR	ENST00000292211	ENST00000491055		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	UBE2Q1	chr1	154525212	-	MAEL	chr1	166974313	+
5UTR-3CDS	ENST00000497453	ENST00000367872		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	UBE2Q1	chr1	154525212	-	MAEL	chr1	166974313	+
5UTR-3CDS	ENST00000497453	ENST00000367870		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	UBE2Q1	chr1	154525212	-	MAEL	chr1	166974313	+
5UTR-3UTR	ENST00000497453	ENST00000491055		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	UBE2Q1	chr1	154525212	-	MAEL	chr1	166974313	+
intron-3UTR	ENST00000368002	ENST00000340758		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-intron	ENST00000368002	ENST00000270218		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-3UTR	ENST00000289865	ENST00000340758		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-intron	ENST00000289865	ENST00000270218		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-3UTR	ENST00000368001	ENST00000340758		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-intron	ENST00000368001	ENST00000270218		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-3UTR	ENST00000493054	ENST00000340758		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
intron-intron	ENST00000493054	ENST00000270218		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	USP21	chr1	161134748	+	IL19	chr1	207016004	+
5CDS-5UTR	ENST00000535420	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000535420	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000535420	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000535420	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000368426	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000368426	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000368426	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000368426	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000487542	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000487542	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
intron-intron	ENST00000487542	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
intron-intron	ENST00000487542	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000417934	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000417934	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000417934	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000417934	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000292176	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000292176	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000292176	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000292176	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0TT-01A	ZBTB7B	chr1	154988290	+	FCAMR	chr1	207143565	-
Frame-shit	ENST00000465139	ENST00000519595		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
Frame-shit	ENST00000465139	ENST00000518642		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
Frame-shit	ENST00000465139	ENST00000250173		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
5CDS-5UTR	ENST00000465139	ENST00000520446		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
intron-3CDS	ENST00000483551	ENST00000519595		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
intron-3CDS	ENST00000483551	ENST00000518642		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
intron-3CDS	ENST00000483551	ENST00000250173		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
intron-5UTR	ENST00000483551	ENST00000520446		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
Frame-shit	ENST00000560303	ENST00000519595		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
Frame-shit	ENST00000560303	ENST00000518642		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
Frame-shit	ENST00000560303	ENST00000250173		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
5CDS-5UTR	ENST00000560303	ENST00000520446		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	ANP32A	chr15	69113037	-	LRRC6	chr8	133650353	-
Frame-shit	ENST00000327064	ENST00000358026		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000344626		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000429416		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000541122		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000589677		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000444061		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000590574		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000413806		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000327064	ENST00000450717		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000327064	ENST00000538456		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000358026		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000344626		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000429416		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000541122		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000589677		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000444061		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000590574		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000413806		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000344150	ENST00000450717		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000344150	ENST00000538456		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	CARM1	chr19	11031803	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535622	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000535622	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000535622	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000400246	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000400246	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000400246	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000266091	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000266091	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000266091	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-3CDS	ENST00000382105	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000382105	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000382105	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000400249	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000400249	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000400249	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000382112	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000382112	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000382112	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000382111	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000382111	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000382111	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000400248	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000400248	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000400248	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-3CDS	ENST00000494060	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000494060	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000494060	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-3CDS	ENST00000536766	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000536766	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000536766	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-3CDS	ENST00000400242	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000400242	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
intron-intron	ENST00000400242	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
Frame-shit	ENST00000539165	ENST00000370602		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000539165	ENST00000423054		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000539165	ENST00000596005		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	DEPDC5	chr22	32272251	+	GOLGA7B	chr10	99619215	+
5CDS-intron	ENST00000227756	ENST00000515723		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	GALNT18	chr11	11642906	-	CARM1P1	chr9	2948282	-
5UTR-intron	ENST00000526064	ENST00000515723		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	GALNT18	chr11	11642906	-	CARM1P1	chr9	2948282	-
intron-3CDS	ENST00000432054	ENST00000254286		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129546646	-	ACTR10	chr14	58669573	+
Frame-shit	ENST00000393238	ENST00000254286		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129546646	-	ACTR10	chr14	58669573	+
Frame-shit	ENST00000426664	ENST00000254286		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129546646	-	ACTR10	chr14	58669573	+
intron-3CDS	ENST00000329333	ENST00000254286		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129546646	-	ACTR10	chr14	58669573	+
intron-3CDS	ENST00000515024	ENST00000254286		TCGA	LD	BRCA	TCGA-AR-A0TU-01A	TMCC1	chr3	129546646	-	ACTR10	chr14	58669573	+
3UTR-intron	ENST00000520468	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520468	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000297564	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000520271	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000517682	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000524245	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000522940	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
3UTR-intron	ENST00000518171	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000407775		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000520492		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000517361		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000522296		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
intron-intron	ENST00000523016	ENST00000378472		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	COX6C	chr8	100899718	-	ZFPM2	chr8	105907635	+
5UTR-3CDS	ENST00000256413	ENST00000398722		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000536736		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000441551		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000300591		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000398705		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000579038		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000441893		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000582408		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000256413	ENST00000398686		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000398722		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000536736		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000441551		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000300591		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000398705		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000579038		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000441893		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000582408		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5UTR-3CDS	ENST00000382998	ENST00000398686		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000398722		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000536736		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000441551		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000300591		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000398705		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000579038		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000441893		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000582408		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
intron-3CDS	ENST00000592658	ENST00000398686		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	CTIF	chr18	46065683	+	LOXHD1	chr18	44089778	-
5CDS-5UTR	ENST00000251808	ENST00000521891		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5CDS-intron	ENST00000251808	ENST00000517683		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5CDS-5UTR	ENST00000251808	ENST00000050961		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5CDS-5UTR	ENST00000251808	ENST00000455469		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5CDS-5UTR	ENST00000251808	ENST00000518282		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5UTR-5UTR	ENST00000395927	ENST00000521891		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5UTR-intron	ENST00000395927	ENST00000517683		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5UTR-5UTR	ENST00000395927	ENST00000050961		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5UTR-5UTR	ENST00000395927	ENST00000455469		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5UTR-5UTR	ENST00000395927	ENST00000518282		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
intron-5UTR	ENST00000517674	ENST00000521891		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
intron-intron	ENST00000517674	ENST00000517683		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
intron-5UTR	ENST00000517674	ENST00000050961		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
intron-5UTR	ENST00000517674	ENST00000455469		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
intron-5UTR	ENST00000517674	ENST00000518282		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	GRHL2	chr8	102505017	+	ZFHX4	chr8	77616278	+
5CDS-5UTR	ENST00000399332	ENST00000355765		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	HECTD1	chr14	31675003	-	PRPF39	chr14	45564424	+
5CDS-5UTR	ENST00000553700	ENST00000355765		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	HECTD1	chr14	31675003	-	PRPF39	chr14	45564424	+
5UTR-5UTR	ENST00000556474	ENST00000355765		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	HECTD1	chr14	31675003	-	PRPF39	chr14	45564424	+
5CDS-5UTR	ENST00000424843	ENST00000523207		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	LRP12	chr8	105601047	-	KCNB2	chr8	73479877	+
5CDS-5UTR	ENST00000276654	ENST00000523207		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	LRP12	chr8	105601047	-	KCNB2	chr8	73479877	+
intron-5UTR	ENST00000518375	ENST00000523207		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	LRP12	chr8	105601047	-	KCNB2	chr8	73479877	+
Frame-shit	ENST00000378017	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000378017	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
Frame-shit	ENST00000518547	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000518547	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
Frame-shit	ENST00000354184	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000354184	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
Frame-shit	ENST00000395508	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000395508	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
Frame-shit	ENST00000325064	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000325064	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
In-frame	ENST00000431961	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000431961	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5UTR-3CDS	ENST00000523587	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5UTR-intron	ENST00000523587	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
Frame-shit	ENST00000524090	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000524090	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	MTSS1	chr8	125575023	-	ZC2HC1A	chr8	79588022	+
5CDS-intron	ENST00000320610	ENST00000283365		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000596745		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000315456		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000598334		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000554864		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000399121		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000595022		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000269190		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000399097		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000598774		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000598142		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000348997		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000597599		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000269191		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000444659		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000399113		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000601125		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000269192		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000591182		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000597674		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000556414		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000599844		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000590831		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000320610	ENST00000592449		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000283365		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000596745		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000315456		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000598334		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000554864		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000399121		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000595022		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000269190		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000399097		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000598774		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000598142		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000348997		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000597599		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000269191		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000444659		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000399113		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000601125		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000269192		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000591182		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000597674		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000556414		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000599844		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000590831		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-intron	ENST00000253159	ENST00000592449		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000283365		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000596745		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000315456		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000598334		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000554864		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000399121		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000595022		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000269190		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000399097		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000598774		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000598142		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000348997		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000597599		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000269191		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000444659		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000399113		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000601125		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000269192		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000591182		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000597674		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000556414		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000599844		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000590831		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
intron-intron	ENST00000583095	ENST00000592449		TCGA	LD	BRCA	TCGA-AR-A0TV-01A	ZNF236	chr18	74640062	+	DTNA	chr18	32093479	+
5CDS-3UTR	ENST00000343245	ENST00000539903		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000343245	ENST00000337579		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000343245	ENST00000404406		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000343245	ENST00000405415		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000343245	ENST00000441023		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-intron	ENST00000343245	ENST00000535104		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369070	ENST00000539903		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369070	ENST00000337579		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369070	ENST00000404406		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369070	ENST00000405415		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369070	ENST00000441023		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-intron	ENST00000369070	ENST00000535104		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369076	ENST00000539903		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369076	ENST00000337579		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369076	ENST00000404406		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369076	ENST00000405415		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000369076	ENST00000441023		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-intron	ENST00000369076	ENST00000535104		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000360666	ENST00000539903		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000360666	ENST00000337579		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000360666	ENST00000404406		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000360666	ENST00000405415		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-3UTR	ENST00000360666	ENST00000441023		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-intron	ENST00000360666	ENST00000535104		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
intron-3UTR	ENST00000475645	ENST00000539903		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
intron-3UTR	ENST00000475645	ENST00000337579		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
intron-3UTR	ENST00000475645	ENST00000404406		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
intron-3UTR	ENST00000475645	ENST00000405415		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
intron-3UTR	ENST00000475645	ENST00000441023		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
intron-intron	ENST00000475645	ENST00000535104		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	ATG5	chr6	106696025	-	RSPH10B	chr7	5972506	-
5CDS-intron	ENST00000401084	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000401084	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000401084	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000401084	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000401084	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000264203	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000264203	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000264203	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000264203	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000264203	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000375142	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000375142	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000375142	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000375142	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000375142	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000433834	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000433834	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000433834	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000433834	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000433834	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000264202	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000264202	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000264202	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000264202	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5CDS-intron	ENST00000264202	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000482808	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000482808	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000482808	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000482808	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
5UTR-intron	ENST00000482808	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000375144	ENST00000478197		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000375144	ENST00000396974		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000375144	ENST00000409870		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000375144	ENST00000340623		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
intron-intron	ENST00000375144	ENST00000443551		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	CAPZB	chr1	19811930	-	C2orf88	chr2	190944680	+
Frame-shit	ENST00000395841	ENST00000371168		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	RAE1	chr20	55949857	+	C20orf85	chr20	56735717	+
Frame-shit	ENST00000371242	ENST00000371168		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	RAE1	chr20	55949857	+	C20orf85	chr20	56735717	+
In-frame	ENST00000527947	ENST00000371168		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	RAE1	chr20	55949857	+	C20orf85	chr20	56735717	+
Frame-shit	ENST00000395840	ENST00000371168		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	RAE1	chr20	55949857	+	C20orf85	chr20	56735717	+
5CDS-3UTR	ENST00000550746	ENST00000327347		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000550746	ENST00000378614		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000550746	ENST00000545675		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000550746	ENST00000537130		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-intron	ENST00000550746	ENST00000494329		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000319106	ENST00000327347		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000319106	ENST00000378614		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000319106	ENST00000545675		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000319106	ENST00000537130		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-intron	ENST00000319106	ENST00000494329		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000485960	ENST00000327347		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000485960	ENST00000378614		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000485960	ENST00000545675		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-3UTR	ENST00000485960	ENST00000537130		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5CDS-intron	ENST00000485960	ENST00000494329		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5UTR-3UTR	ENST00000393309	ENST00000327347		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5UTR-3UTR	ENST00000393309	ENST00000378614		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5UTR-3UTR	ENST00000393309	ENST00000545675		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5UTR-3UTR	ENST00000393309	ENST00000537130		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
5UTR-intron	ENST00000393309	ENST00000494329		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
intron-3UTR	ENST00000548679	ENST00000327347		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
intron-3UTR	ENST00000548679	ENST00000378614		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
intron-3UTR	ENST00000548679	ENST00000545675		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
intron-3UTR	ENST00000548679	ENST00000537130		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
intron-intron	ENST00000548679	ENST00000494329		TCGA	LD	BRCA	TCGA-AR-A0TW-01A	TBC1D15	chr12	72266782	+	SEPHS1	chr10	13361034	-
In-frame	ENST00000431231	ENST00000225823		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
In-frame	ENST00000431231	ENST00000359872		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
5CDS-5UTR	ENST00000431231	ENST00000448983		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
In-frame	ENST00000437668	ENST00000225823		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
In-frame	ENST00000437668	ENST00000359872		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
5CDS-5UTR	ENST00000437668	ENST00000448983		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
intron-3CDS	ENST00000582409	ENST00000225823		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
intron-3CDS	ENST00000582409	ENST00000359872		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
intron-5UTR	ENST00000582409	ENST00000448983		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
In-frame	ENST00000443378	ENST00000225823		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
In-frame	ENST00000443378	ENST00000359872		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
5CDS-5UTR	ENST00000443378	ENST00000448983		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	ARHGAP23	chr17	36636124	+	ASIC2	chr17	31351032	-
5CDS-5UTR	ENST00000321998	ENST00000439951		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000321998	ENST00000313733		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000321998	ENST00000358053		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000321998	ENST00000471817		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000568985	ENST00000439951		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000568985	ENST00000313733		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000568985	ENST00000358053		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000568985	ENST00000471817		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000544894	ENST00000439951		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000544894	ENST00000313733		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000544894	ENST00000358053		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000544894	ENST00000471817		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000569127	ENST00000439951		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000569127	ENST00000313733		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000569127	ENST00000358053		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000569127	ENST00000471817		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000567314	ENST00000439951		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000567314	ENST00000313733		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000567314	ENST00000358053		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
intron-intron	ENST00000567314	ENST00000471817		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	COQ7	chr16	19087182	+	OSBPL2	chr20	60831113	+
In-frame	ENST00000341744	ENST00000244043		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
5CDS-5UTR	ENST00000341744	ENST00000478971		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-3CDS	ENST00000395816	ENST00000244043		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000395816	ENST00000478971		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-3CDS	ENST00000347215	ENST00000244043		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000347215	ENST00000478971		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-3CDS	ENST00000265626	ENST00000244043		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000265626	ENST00000478971		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-3CDS	ENST00000395814	ENST00000244043		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000395814	ENST00000478971		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-3CDS	ENST00000472841	ENST00000244043		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000472841	ENST00000478971		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PMEPA1	chr20	56284530	-	PTGIS	chr20	48130932	-
Frame-shit	ENST00000228705	ENST00000355086		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63225894	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000228705	ENST00000357825		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63225894	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000228705	ENST00000543397		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63225894	-	SRGAP1	chr12	64536075	+
intron-3CDS	ENST00000551214	ENST00000355086		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63225894	-	SRGAP1	chr12	64536075	+
intron-3CDS	ENST00000551214	ENST00000357825		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63225894	-	SRGAP1	chr12	64536075	+
intron-3CDS	ENST00000551214	ENST00000543397		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63225894	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000228705	ENST00000353364		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
Frame-shit	ENST00000228705	ENST00000280377		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
Frame-shit	ENST00000228705	ENST00000393654		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000228705	ENST00000550632		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000228705	ENST00000312635		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000551214	ENST00000353364		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000551214	ENST00000280377		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000551214	ENST00000393654		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
intron-3UTR	ENST00000551214	ENST00000550632		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
intron-3UTR	ENST00000551214	ENST00000312635		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	PPM1H	chr12	63328272	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000254066	ENST00000339368		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000254066	ENST00000509152		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000254066	ENST00000526473		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000394089	ENST00000339368		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000394089	ENST00000509152		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000394089	ENST00000526473		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000425707	ENST00000339368		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000425707	ENST00000509152		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000425707	ENST00000526473		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000394086	ENST00000339368		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000394086	ENST00000509152		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000394086	ENST00000526473		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000394081	ENST00000339368		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000394081	ENST00000509152		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000394081	ENST00000526473		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000420042	ENST00000339368		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000420042	ENST00000509152		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
intron-3UTR	ENST00000420042	ENST00000526473		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	RARA	chr17	38487648	+	ZNF595	chr4	59323	+
5UTR-5UTR	ENST00000371828	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000371828	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000371828	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000371828	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-5UTR	ENST00000371802	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000371802	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000371802	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000371802	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-5UTR	ENST00000371856	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000371856	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000371856	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000371856	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-5UTR	ENST00000347458	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000347458	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000347458	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000347458	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-5UTR	ENST00000340954	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000340954	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000340954	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000340954	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-5UTR	ENST00000371792	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000371792	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000371792	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-intron	ENST00000371792	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-5UTR	ENST00000360426	ENST00000372484		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000360426	ENST00000354880		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000360426	ENST00000191018		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
5UTR-intron	ENST00000360426	ENST00000372459		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	STAU1	chr20	47790732	-	CTSA	chr20	44519812	+
intron-3CDS	ENST00000394121	ENST00000394303		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000394121	ENST00000394310		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000394121	ENST00000344140		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-5UTR	ENST00000394121	ENST00000582877		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000264637	ENST00000394303		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000264637	ENST00000394310		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000264637	ENST00000344140		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-5UTR	ENST00000264637	ENST00000582877		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000584985	ENST00000394303		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000584985	ENST00000394310		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000584985	ENST00000344140		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-5UTR	ENST00000584985	ENST00000582877		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000450525	ENST00000394303		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000450525	ENST00000394310		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000450525	ENST00000344140		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-5UTR	ENST00000450525	ENST00000582877		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000546243	ENST00000394303		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000546243	ENST00000394310		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-3CDS	ENST00000546243	ENST00000344140		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
intron-5UTR	ENST00000546243	ENST00000582877		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	THRA	chr17	38233292	+	CACNB1	chr17	37347795	-
In-frame	ENST00000233047	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000233047	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
5CDS-intron	ENST00000233047	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
intron-3CDS	ENST00000572258	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
intron-3CDS	ENST00000572258	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
intron-intron	ENST00000572258	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
intron-3CDS	ENST00000574092	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
intron-3CDS	ENST00000574092	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
intron-intron	ENST00000574092	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000261388	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000261388	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
5CDS-intron	ENST00000261388	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000451578	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000451578	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
5CDS-intron	ENST00000451578	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000572599	ENST00000261383		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
In-frame	ENST00000572599	ENST00000415178		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
5CDS-intron	ENST00000572599	ENST00000575491		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	TMEM159	chr16	21185469	+	DNAH3	chr16	21074004	-
Frame-shit	ENST00000353364	ENST00000360469		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000353364	ENST00000543233		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
Frame-shit	ENST00000280377	ENST00000360469		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000280377	ENST00000543233		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
Frame-shit	ENST00000393654	ENST00000360469		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000393654	ENST00000543233		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
intron-3CDS	ENST00000550632	ENST00000360469		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
intron-5UTR	ENST00000550632	ENST00000543233		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
intron-3CDS	ENST00000312635	ENST00000360469		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
intron-5UTR	ENST00000312635	ENST00000543233		TCGA	LD	BRCA	TCGA-AR-A0TX-01A	USP15	chr12	62749256	+	CDH4	chr20	60318619	+
In-frame	ENST00000522677	ENST00000286614		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
5CDS-5UTR	ENST00000522677	ENST00000544227		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
In-frame	ENST00000517885	ENST00000286614		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
5CDS-5UTR	ENST00000517885	ENST00000544227		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
In-frame	ENST00000524176	ENST00000286614		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
5CDS-5UTR	ENST00000524176	ENST00000544227		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
intron-3CDS	ENST00000522419	ENST00000286614		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
intron-5UTR	ENST00000522419	ENST00000544227		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	MYBL1	chr8	67484717	-	MMP16	chr8	89086971	-
5CDS-intron	ENST00000038176	ENST00000523492		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000038176	ENST00000286234		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000038176	ENST00000518057		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000427130	ENST00000523492		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000427130	ENST00000286234		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000427130	ENST00000518057		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5UTR-intron	ENST00000519858	ENST00000523492		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5UTR-intron	ENST00000519858	ENST00000286234		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
5UTR-intron	ENST00000519858	ENST00000518057		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	NSMAF	chr8	59535779	-	DEPTOR	chr8	120940640	+
In-frame	ENST00000406452	ENST00000423620		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000406452	ENST00000433389		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000406452	ENST00000358397		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000406452	ENST00000454170		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5CDS-intron	ENST00000406452	ENST00000523347		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
Frame-shit	ENST00000523911	ENST00000423620		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
Frame-shit	ENST00000523911	ENST00000433389		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
Frame-shit	ENST00000523911	ENST00000358397		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
Frame-shit	ENST00000523911	ENST00000454170		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5CDS-intron	ENST00000523911	ENST00000523347		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000519966	ENST00000423620		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000519966	ENST00000433389		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000519966	ENST00000358397		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000519966	ENST00000454170		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5CDS-intron	ENST00000519966	ENST00000523347		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000430676	ENST00000423620		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000430676	ENST00000433389		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000430676	ENST00000358397		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
In-frame	ENST00000430676	ENST00000454170		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5CDS-intron	ENST00000430676	ENST00000523347		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000518772	ENST00000423620		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000518772	ENST00000433389		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000518772	ENST00000358397		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000518772	ENST00000454170		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
5UTR-intron	ENST00000518772	ENST00000523347		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	RMDN1	chr8	87519224	-	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000255559	ENST00000328313		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	SLC39A11	chr17	71088710	-	ENPP7	chr17	77707395	+
intron-3CDS	ENST00000542342	ENST00000328313		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	SLC39A11	chr17	71088710	-	ENPP7	chr17	77707395	+
intron-3CDS	ENST00000579988	ENST00000328313		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	SLC39A11	chr17	71088710	-	ENPP7	chr17	77707395	+
intron-3CDS	ENST00000579732	ENST00000328313		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	SLC39A11	chr17	71088710	-	ENPP7	chr17	77707395	+
5CDS-intron	ENST00000261716	ENST00000534836		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000261716	ENST00000541045		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000261716	ENST00000536908		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000261716	ENST00000378738		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000261716	ENST00000394832		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000261716	ENST00000320856		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000261716	ENST00000394835		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000534836		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000541045		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000536908		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000378738		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000394832		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000320856		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000536202	ENST00000394835		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TAOK1	chr17	27844674	+	EFCAB5	chr17	28418889	+
Frame-shit	ENST00000221132	ENST00000276416		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TNFRSF10A	chr8	23069629	-	BIN3	chr8	22502316	-
5CDS-5UTR	ENST00000221132	ENST00000519513		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TNFRSF10A	chr8	23069629	-	BIN3	chr8	22502316	-
5CDS-5UTR	ENST00000221132	ENST00000399977		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TNFRSF10A	chr8	23069629	-	BIN3	chr8	22502316	-
5CDS-intron	ENST00000221132	ENST00000519335		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TNFRSF10A	chr8	23069629	-	BIN3	chr8	22502316	-
5CDS-intron	ENST00000221132	ENST00000520292		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TNFRSF10A	chr8	23069629	-	BIN3	chr8	22502316	-
5CDS-intron	ENST00000221132	ENST00000522268		TCGA	LD	BRCA	TCGA-AR-A0TY-01A	TNFRSF10A	chr8	23069629	-	BIN3	chr8	22502316	-
5CDS-5UTR	ENST00000435504	ENST00000597960		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000435504	ENST00000610101		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000435504	ENST00000596558		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000435504	ENST00000222308		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000435504	ENST00000608443		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000435504	ENST00000453489		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000336112	ENST00000597960		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000336112	ENST00000610101		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000336112	ENST00000596558		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000336112	ENST00000222308		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000336112	ENST00000608443		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5CDS-5UTR	ENST00000336112	ENST00000453489		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5UTR-5UTR	ENST00000272341	ENST00000597960		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5UTR-5UTR	ENST00000272341	ENST00000610101		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5UTR-5UTR	ENST00000272341	ENST00000596558		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5UTR-5UTR	ENST00000272341	ENST00000222308		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5UTR-5UTR	ENST00000272341	ENST00000608443		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
5UTR-5UTR	ENST00000272341	ENST00000453489		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000404843	ENST00000597960		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000404843	ENST00000610101		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000404843	ENST00000596558		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000404843	ENST00000222308		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000404843	ENST00000608443		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000404843	ENST00000453489		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000497092	ENST00000597960		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000497092	ENST00000610101		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000497092	ENST00000596558		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000497092	ENST00000222308		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000497092	ENST00000608443		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
intron-5UTR	ENST00000497092	ENST00000453489		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	ASXL2	chr2	26068350	-	FKBP8	chr19	18652808	-
3UTR-3CDS	ENST00000395996	ENST00000313174		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
3UTR-3CDS	ENST00000395996	ENST00000305425		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
3UTR-3CDS	ENST00000395996	ENST00000354591		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
3UTR-3CDS	ENST00000395996	ENST00000359684		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000358544	ENST00000313174		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000358544	ENST00000305425		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000358544	ENST00000354591		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000358544	ENST00000359684		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000357162	ENST00000313174		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000357162	ENST00000305425		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000357162	ENST00000354591		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
In-frame	ENST00000357162	ENST00000359684		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000355155	ENST00000313174		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000355155	ENST00000305425		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000355155	ENST00000354591		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000355155	ENST00000359684		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000441350	ENST00000313174		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000441350	ENST00000305425		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000441350	ENST00000354591		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000441350	ENST00000359684		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000521932	ENST00000313174		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000521932	ENST00000305425		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000521932	ENST00000354591		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
intron-3CDS	ENST00000521932	ENST00000359684		TCGA	LD	BRCA	TCGA-AR-A0U0-01A	VPS13B	chr8	100533238	+	DACH1	chr13	72014824	-
Frame-shit	ENST00000456329	ENST00000274364		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-5UTR	ENST00000456329	ENST00000379730		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000456329	ENST00000396234		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000456329	ENST00000502745		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000456329	ENST00000508410		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
Frame-shit	ENST00000523662	ENST00000274364		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-5UTR	ENST00000523662	ENST00000379730		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000523662	ENST00000396234		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000523662	ENST00000502745		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000523662	ENST00000508410		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
Frame-shit	ENST00000307063	ENST00000274364		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-5UTR	ENST00000307063	ENST00000379730		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000307063	ENST00000396234		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000307063	ENST00000502745		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
5CDS-intron	ENST00000307063	ENST00000508410		TCGA	LD	BRCA	TCGA-AR-A0U2-01A	PWWP2A	chr5	159545812	-	IQGAP2	chr5	75858221	+
In-frame	ENST00000379573	ENST00000336095		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379573	ENST00000358395		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379573	ENST00000432261		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379573	ENST00000545616		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379567	ENST00000336095		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379567	ENST00000358395		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379567	ENST00000432261		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000379567	ENST00000545616		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000246041	ENST00000336095		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000246041	ENST00000358395		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000246041	ENST00000432261		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
In-frame	ENST00000246041	ENST00000545616		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	AP5S1	chr20	3802940	+	RNF24	chr20	3928926	-
Frame-shit	ENST00000319670	ENST00000341500		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ARHGEF18	chr19	7509340	+	INSR	chr19	7267907	-
Frame-shit	ENST00000319670	ENST00000302850		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ARHGEF18	chr19	7509340	+	INSR	chr19	7267907	-
Frame-shit	ENST00000359920	ENST00000341500		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ARHGEF18	chr19	7509340	+	INSR	chr19	7267907	-
Frame-shit	ENST00000359920	ENST00000302850		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ARHGEF18	chr19	7509340	+	INSR	chr19	7267907	-
Frame-shit	ENST00000246533	ENST00000331872		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000246533	ENST00000417584		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000246533	ENST00000311223		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000246533	ENST00000491322		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000246533	ENST00000339526		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000589146	ENST00000331872		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000589146	ENST00000417584		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000589146	ENST00000311223		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
intron-5UTR	ENST00000589146	ENST00000491322		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
intron-5UTR	ENST00000589146	ENST00000339526		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000587718	ENST00000331872		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000587718	ENST00000417584		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000587718	ENST00000311223		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000587718	ENST00000491322		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000587718	ENST00000339526		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000590874	ENST00000331872		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000590874	ENST00000417584		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000590874	ENST00000311223		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000590874	ENST00000491322		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000590874	ENST00000339526		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000588815	ENST00000331872		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000588815	ENST00000417584		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000588815	ENST00000311223		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000588815	ENST00000491322		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000588815	ENST00000339526		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000588780	ENST00000331872		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000588780	ENST00000417584		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000588780	ENST00000311223		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000588780	ENST00000491322		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
5CDS-5UTR	ENST00000588780	ENST00000339526		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CAPNS1	chr19	36633235	+	GLUL	chr1	182355537	-
Frame-shit	ENST00000225428	ENST00000378079		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CWC25	chr17	36965955	-	FBXO47	chr17	37099989	-
In-frame	ENST00000536127	ENST00000378079		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	CWC25	chr17	36965955	-	FBXO47	chr17	37099989	-
Frame-shit	ENST00000376980	ENST00000422359		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DNAJC1	chr10	22209724	-	EBLN1	chr10	22498950	-
intron-3CDS	ENST00000376946	ENST00000422359		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DNAJC1	chr10	22209724	-	EBLN1	chr10	22498950	-
intron-3CDS	ENST00000483085	ENST00000422359		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DNAJC1	chr10	22209724	-	EBLN1	chr10	22498950	-
3UTR-3CDS	ENST00000462274	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
3UTR-3CDS	ENST00000462274	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
3UTR-3CDS	ENST00000462274	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
3UTR-3UTR	ENST00000462274	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
3UTR-5UTR	ENST00000462274	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
3UTR-intron	ENST00000462274	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
5UTR-3CDS	ENST00000338785	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
5UTR-3CDS	ENST00000338785	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
5UTR-3CDS	ENST00000338785	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
5UTR-3UTR	ENST00000338785	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
5UTR-5UTR	ENST00000338785	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
5UTR-intron	ENST00000338785	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000451934	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000451934	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000451934	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000451934	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000451934	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000451934	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000321219	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000321219	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000321219	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000321219	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000321219	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000321219	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000339659	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000339659	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000339659	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000339659	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000339659	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000339659	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000398960	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000398960	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000398960	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000398960	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000398960	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000398960	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000398956	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000398956	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000398956	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000398956	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000398956	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000398956	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000355666		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000399017		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000354749		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000455387	ENST00000479930		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000455387	ENST00000540756		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000455387	ENST00000399010		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38480692	+
intron-intron	ENST00000390658	ENST00000378313		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EID2	chr19	40030169	-	C19orf54	chr19	41257386	-
intron-intron	ENST00000390658	ENST00000470681		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EID2	chr19	40030169	-	C19orf54	chr19	41257386	-
intron-intron	ENST00000390658	ENST00000594163		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EID2	chr19	40030169	-	C19orf54	chr19	41257386	-
intron-intron	ENST00000390658	ENST00000598485		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EID2	chr19	40030169	-	C19orf54	chr19	41257386	-
intron-intron	ENST00000390658	ENST00000339153		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EID2	chr19	40030169	-	C19orf54	chr19	41257386	-
intron-intron	ENST00000390658	ENST00000598729		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EID2	chr19	40030169	-	C19orf54	chr19	41257386	-
5CDS-intron	ENST00000402714	ENST00000560371		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-5UTR	ENST00000402714	ENST00000347662		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-5UTR	ENST00000402714	ENST00000392745		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000402714	ENST00000539721		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000402714	ENST00000351691		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000544450	ENST00000560371		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-5UTR	ENST00000544450	ENST00000347662		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-5UTR	ENST00000544450	ENST00000392745		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000544450	ENST00000539721		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000544450	ENST00000351691		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000392920	ENST00000560371		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-5UTR	ENST00000392920	ENST00000347662		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-5UTR	ENST00000392920	ENST00000392745		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000392920	ENST00000539721		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5CDS-intron	ENST00000392920	ENST00000351691		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
3UTR-intron	ENST00000555048	ENST00000560371		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
3UTR-5UTR	ENST00000555048	ENST00000347662		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
3UTR-5UTR	ENST00000555048	ENST00000392745		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
3UTR-intron	ENST00000555048	ENST00000539721		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
3UTR-intron	ENST00000555048	ENST00000351691		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	EVL	chr14	100563995	+	TRAF3	chr14	103296671	+
5UTR-3UTR	ENST00000533050	ENST00000525943		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
5UTR-3UTR	ENST00000533050	ENST00000263576		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
3UTR-3UTR	ENST00000525728	ENST00000525943		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
3UTR-3UTR	ENST00000525728	ENST00000263576		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
5UTR-3UTR	ENST00000529731	ENST00000525943		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
5UTR-3UTR	ENST00000529731	ENST00000263576		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
5UTR-3UTR	ENST00000360194	ENST00000525943		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
5UTR-3UTR	ENST00000360194	ENST00000263576		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	FAM118B	chr11	126081725	+	DDX25	chr11	125791086	+
In-frame	ENST00000539261	ENST00000440973		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
In-frame	ENST00000539261	ENST00000338799		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000539261	ENST00000456483		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000539261	ENST00000443427		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000539261	ENST00000206249		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000539261	ENST00000406599		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000539261	ENST00000427531		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000539261	ENST00000482101		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
In-frame	ENST00000228938	ENST00000440973		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
In-frame	ENST00000228938	ENST00000338799		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000228938	ENST00000456483		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000228938	ENST00000443427		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000228938	ENST00000206249		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000228938	ENST00000406599		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000228938	ENST00000427531		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
5CDS-intron	ENST00000228938	ENST00000482101		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	MGP	chr12	15037147	-	ESR1	chr6	152265308	+
In-frame	ENST00000336095	ENST00000262487		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	RNF24	chr20	3925824	-	ISM1	chr20	13260281	+
Frame-shit	ENST00000358395	ENST00000262487		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	RNF24	chr20	3925824	-	ISM1	chr20	13260281	+
In-frame	ENST00000432261	ENST00000262487		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	RNF24	chr20	3925824	-	ISM1	chr20	13260281	+
Frame-shit	ENST00000545616	ENST00000262487		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	RNF24	chr20	3925824	-	ISM1	chr20	13260281	+
intron-3UTR	ENST00000342228	ENST00000503191		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000342228	ENST00000382020		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000342228	ENST00000506802		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000342228	ENST00000509380		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000342228	ENST00000503731		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
5UTR-3UTR	ENST00000520262	ENST00000503191		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
5UTR-3UTR	ENST00000520262	ENST00000382020		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
5UTR-3UTR	ENST00000520262	ENST00000506802		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
5UTR-3UTR	ENST00000520262	ENST00000509380		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
5UTR-3UTR	ENST00000520262	ENST00000503731		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000520179	ENST00000503191		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000520179	ENST00000382020		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000520179	ENST00000506802		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000520179	ENST00000509380		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000520179	ENST00000503731		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000523340	ENST00000503191		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000523340	ENST00000382020		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000523340	ENST00000506802		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000523340	ENST00000509380		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3UTR	ENST00000523340	ENST00000503731		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	SLC20A2	chr8	42358549	-	TUSC3	chr8	15531256	+
intron-3CDS	ENST00000344749	ENST00000297875		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000344749	ENST00000357972		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000344749	ENST00000456733		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
In-frame	ENST00000262965	ENST00000297875		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
In-frame	ENST00000262965	ENST00000357972		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
In-frame	ENST00000262965	ENST00000456733		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000453954	ENST00000297875		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000453954	ENST00000357972		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000453954	ENST00000456733		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
Frame-shit	ENST00000395423	ENST00000297875		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
Frame-shit	ENST00000395423	ENST00000357972		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
Frame-shit	ENST00000395423	ENST00000456733		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000588136	ENST00000297875		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000588136	ENST00000357972		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
intron-3CDS	ENST00000588136	ENST00000456733		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TCF3	chr19	1615284	-	SYTL5	chrX	37985841	+
In-frame	ENST00000457354	ENST00000261700		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TMX1	chr14	51716483	+	C14orf166	chr14	52466426	+
In-frame	ENST00000457354	ENST00000556760		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TMX1	chr14	51716483	+	C14orf166	chr14	52466426	+
5CDS-5UTR	ENST00000359626	ENST00000430815		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TYW1	chr7	66532390	+	C21orf91-OT1	chr21	19140015	-
intron-5UTR	ENST00000491969	ENST00000430815		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	TYW1	chr7	66532390	+	C21orf91-OT1	chr21	19140015	-
5UTR-3CDS	ENST00000293471	ENST00000301141		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ZNF613	chr19	52433149	+	CYP2A6	chr19	41356256	-
5UTR-3CDS	ENST00000391794	ENST00000301141		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ZNF613	chr19	52433149	+	CYP2A6	chr19	41356256	-
intron-3CDS	ENST00000601794	ENST00000301141		TCGA	LD	BRCA	TCGA-AR-A0U3-01A	ZNF613	chr19	52433149	+	CYP2A6	chr19	41356256	-
5CDS-5UTR	ENST00000263666	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000263666	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000263666	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000263666	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000466780	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000466780	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000466780	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000466780	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000308537	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-5UTR	ENST00000308537	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000308537	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000308537	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000462146	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000462146	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000462146	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000462146	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000535920	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000535920	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000535920	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000535920	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000479530	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000479530	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000479530	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000479530	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000466348	ENST00000400962		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-5UTR	ENST00000466348	ENST00000324852		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000466348	ENST00000450945		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
intron-intron	ENST00000466348	ENST00000486178		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PDZRN3	chr3	73651505	-	FCAMR	chr1	207143565	-
5CDS-intron	ENST00000422959	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000422959	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000422959	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000422959	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000422959	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000422959	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000422959	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000307305	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000424760	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000415251	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000275575	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000450574	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000416283	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
5CDS-intron	ENST00000248550	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000494188		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000409892		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000409784		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000398529		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000409751		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000260638		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-intron	ENST00000454592	ENST00000356214		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PHTF2	chr7	77469617	+	RAB1A	chr2	65316204	-
intron-5UTR	ENST00000449969	ENST00000400921		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000449969	ENST00000400920		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-intron	ENST00000449969	ENST00000479263		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000288766	ENST00000400921		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000288766	ENST00000400920		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-intron	ENST00000288766	ENST00000479263		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000378488	ENST00000400921		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000378488	ENST00000400920		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-intron	ENST00000378488	ENST00000479263		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000419816	ENST00000400921		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000419816	ENST00000400920		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-intron	ENST00000419816	ENST00000479263		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000378486	ENST00000400921		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000378486	ENST00000400920		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
intron-intron	ENST00000378486	ENST00000479263		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PLCH2	chr1	2362068	+	PRKCZ	chr1	2066701	+
In-frame	ENST00000355680	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000355680	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000355680	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000355680	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000355680	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000355680	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000355680	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000355680	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000397638	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397638	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397638	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397638	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397638	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397638	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397638	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000397638	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000291705	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000291705	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000291705	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000291705	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000291705	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000291705	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000291705	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000291705	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000458387	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000458387	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000458387	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000458387	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000458387	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000458387	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000458387	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000458387	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000451211	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000451211	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000451211	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000451211	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000451211	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000451211	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000451211	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000451211	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000397637	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397637	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397637	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397637	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397637	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397637	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397637	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000397637	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000334494	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000334494	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000334494	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000334494	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000334494	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000334494	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000334494	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000334494	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000397628	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397628	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397628	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397628	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397628	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397628	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000397628	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000397628	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
In-frame	ENST00000440086	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000440086	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000440086	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000440086	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000440086	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000440086	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-intron	ENST00000440086	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
5CDS-3UTR	ENST00000440086	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-3CDS	ENST00000491389	ENST00000400274		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-intron	ENST00000491389	ENST00000427143		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-intron	ENST00000491389	ENST00000318711		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-intron	ENST00000491389	ENST00000417564		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-intron	ENST00000491389	ENST00000457905		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-intron	ENST00000491389	ENST00000466639		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-intron	ENST00000491389	ENST00000435722		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-3UTR	ENST00000491389	ENST00000479654		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	PRMT2	chr21	48064400	+	DIP2A	chr21	47985626	+
intron-3CDS	ENST00000494188	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000494188	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-intron	ENST00000494188	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409892	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-intron	ENST00000409892	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000409784	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000409784	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000398529	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000398529	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000409751	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
intron-intron	ENST00000409751	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000260638	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000260638	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000422959		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000307305		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000424760		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000415251		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000275575		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000450574		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000416283		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000356214	ENST00000248550		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000356214	ENST00000454592		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	RAB1A	chr2	65325105	-	PHTF2	chr7	77522925	+
In-frame	ENST00000374586	ENST00000561981		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	TMEM245	chr9	111868788	-	FRRS1L	chr9	111912000	-
5CDS-intron	ENST00000283713	ENST00000443503		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000283713	ENST00000273179		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000283713	ENST00000310189		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000383759	ENST00000443503		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000383759	ENST00000273179		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000383759	ENST00000310189		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000465644	ENST00000443503		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000465644	ENST00000273179		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000465644	ENST00000310189		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	VILL	chr3	38040930	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000375664	ENST00000284414		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	WAC	chr10	28824686	+	LRRC37A6P	chr10	27535626	-
5CDS-intron	ENST00000375646	ENST00000284414		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	WAC	chr10	28824686	+	LRRC37A6P	chr10	27535626	-
5CDS-intron	ENST00000347934	ENST00000284414		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	WAC	chr10	28824686	+	LRRC37A6P	chr10	27535626	-
5CDS-intron	ENST00000354911	ENST00000284414		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	WAC	chr10	28824686	+	LRRC37A6P	chr10	27535626	-
5CDS-intron	ENST00000428935	ENST00000284414		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	WAC	chr10	28824686	+	LRRC37A6P	chr10	27535626	-
3UTR-intron	ENST00000532233	ENST00000284414		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	WAC	chr10	28824686	+	LRRC37A6P	chr10	27535626	-
In-frame	ENST00000326775	ENST00000249373		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	ZKSCAN5	chr7	99110214	+	SMO	chr7	128843225	+
In-frame	ENST00000451158	ENST00000249373		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	ZKSCAN5	chr7	99110214	+	SMO	chr7	128843225	+
In-frame	ENST00000394170	ENST00000249373		TCGA	LD	BRCA	TCGA-AR-A0U4-01A	ZKSCAN5	chr7	99110214	+	SMO	chr7	128843225	+
Frame-shit	ENST00000316519	ENST00000409039		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
5CDS-intron	ENST00000316519	ENST00000538983		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
Frame-shit	ENST00000261686	ENST00000409039		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
5CDS-intron	ENST00000261686	ENST00000538983		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
5UTR-3CDS	ENST00000316543	ENST00000409039		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
5UTR-intron	ENST00000316543	ENST00000538983		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
intron-3CDS	ENST00000545511	ENST00000409039		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
intron-intron	ENST00000545511	ENST00000538983		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
intron-3CDS	ENST00000543665	ENST00000409039		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
intron-intron	ENST00000543665	ENST00000538983		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
intron-3CDS	ENST00000398953	ENST00000409039		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
intron-intron	ENST00000398953	ENST00000538983		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	AACS	chr12	125599103	+	DNAH10	chr12	124419168	+
Frame-shit	ENST00000264607	ENST00000391993		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000264607	ENST00000373327		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000264607	ENST00000391994		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
3UTR-3CDS	ENST00000469885	ENST00000391993		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
3UTR-3CDS	ENST00000469885	ENST00000373327		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
3UTR-3CDS	ENST00000469885	ENST00000391994		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000409297	ENST00000391993		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000409297	ENST00000373327		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
Frame-shit	ENST00000409297	ENST00000391994		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	ASB1	chr2	239342336	+	TRAF3IP1	chr2	239306100	+
5CDS-5UTR	ENST00000357674	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000314062	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000346964	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000419354	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
intron-5UTR	ENST00000452595	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000422288	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000448528	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
intron-5UTR	ENST00000443183	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000450955	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5CDS-5UTR	ENST00000392382	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
5UTR-5UTR	ENST00000485409	ENST00000435620		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	DLG1	chr3	197009550	-	ANKRD18DP	chr3	197792677	-
Frame-shit	ENST00000379141	ENST00000548804		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
Frame-shit	ENST00000379141	ENST00000337737		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
Frame-shit	ENST00000379141	ENST00000548198		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
In-frame	ENST00000379141	ENST00000551632		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
Frame-shit	ENST00000320743	ENST00000548804		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
Frame-shit	ENST00000320743	ENST00000337737		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
Frame-shit	ENST00000320743	ENST00000548198		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
In-frame	ENST00000320743	ENST00000551632		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	DTX3	chr12	58002860	+
5CDS-intron	ENST00000379141	ENST00000422156		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-3UTR	ENST00000379141	ENST00000540759		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-intron	ENST00000379141	ENST00000550465		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-3UTR	ENST00000379141	ENST00000354947		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-intron	ENST00000320743	ENST00000422156		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-3UTR	ENST00000320743	ENST00000540759		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-intron	ENST00000320743	ENST00000550465		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
5CDS-3UTR	ENST00000320743	ENST00000354947		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	LRIG3	chr12	59307763	-	PIP4K2C	chr12	57996754	+
Frame-shit	ENST00000252996	ENST00000335351		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61488987	-
Frame-shit	ENST00000252996	ENST00000217162		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61488987	-
intron-3CDS	ENST00000609045	ENST00000335351		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61488987	-
intron-3CDS	ENST00000609045	ENST00000217162		TCGA	LD	BRCA	TCGA-AR-A1AH-01A	TAF4	chr20	60572606	-	TCFL5	chr20	61488987	-
intron-3UTR	ENST00000539909	ENST00000451677		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-intron	ENST00000539909	ENST00000378202		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-intron	ENST00000539909	ENST00000378197		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-3UTR	ENST00000286621	ENST00000451677		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-intron	ENST00000286621	ENST00000378202		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-intron	ENST00000286621	ENST00000378197		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-3UTR	ENST00000372734	ENST00000451677		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-intron	ENST00000372734	ENST00000378202		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-intron	ENST00000372734	ENST00000378197		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-3UTR	ENST00000541550	ENST00000451677		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-intron	ENST00000541550	ENST00000378202		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-intron	ENST00000541550	ENST00000378197		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-3UTR	ENST00000467840	ENST00000451677		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-intron	ENST00000467840	ENST00000378202		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
intron-intron	ENST00000467840	ENST00000378197		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ADK	chr10	75936644	+	RPP38	chr10	15153685	+
5CDS-intron	ENST00000324856	ENST00000321265		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
5CDS-intron	ENST00000324856	ENST00000484772		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
5CDS-intron	ENST00000457599	ENST00000321265		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
5CDS-intron	ENST00000457599	ENST00000484772		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
5CDS-intron	ENST00000374152	ENST00000321265		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
5CDS-intron	ENST00000374152	ENST00000484772		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
intron-intron	ENST00000540690	ENST00000321265		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
intron-intron	ENST00000540690	ENST00000484772		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	ARID1A	chr1	27088810	+	NUDC	chr1	27237619	+
5CDS-3UTR	ENST00000400337	ENST00000484861		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
5CDS-3UTR	ENST00000400337	ENST00000397911		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
5CDS-3UTR	ENST00000355480	ENST00000484861		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
5CDS-3UTR	ENST00000355480	ENST00000397911		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
5CDS-3UTR	ENST00000359759	ENST00000484861		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
5CDS-3UTR	ENST00000359759	ENST00000397911		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
intron-3UTR	ENST00000459895	ENST00000484861		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
intron-3UTR	ENST00000459895	ENST00000397911		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	COL18A1	chr21	46908358	+	KRTAP10-9	chr21	46047984	+
intron-3CDS	ENST00000420886	ENST00000424014		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-3CDS	ENST00000420886	ENST00000539951		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-3CDS	ENST00000420886	ENST00000537073		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-5UTR	ENST00000420886	ENST00000543940		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-3CDS	ENST00000267176	ENST00000424014		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-3CDS	ENST00000267176	ENST00000539951		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-3CDS	ENST00000267176	ENST00000537073		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
intron-5UTR	ENST00000267176	ENST00000543940		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-3CDS	ENST00000602750	ENST00000424014		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-3CDS	ENST00000602750	ENST00000539951		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-3CDS	ENST00000602750	ENST00000537073		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-5UTR	ENST00000602750	ENST00000543940		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-3CDS	ENST00000602398	ENST00000424014		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-3CDS	ENST00000602398	ENST00000539951		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-3CDS	ENST00000602398	ENST00000537073		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
5UTR-5UTR	ENST00000602398	ENST00000543940		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SBNO1	chr12	123849248	-	EIF2B1	chr12	124116993	-
Frame-shit	ENST00000380155	ENST00000357277		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
Frame-shit	ENST00000380155	ENST00000303843		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
5CDS-5UTR	ENST00000380155	ENST00000380064		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
5CDS-intron	ENST00000380155	ENST00000469714		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
3UTR-3CDS	ENST00000495743	ENST00000357277		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
3UTR-3CDS	ENST00000495743	ENST00000303843		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
3UTR-5UTR	ENST00000495743	ENST00000380064		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
3UTR-intron	ENST00000495743	ENST00000469714		TCGA	LD	BRCA	TCGA-AR-A1AI-01A	SYAP1	chrX	16738022	+	REPS2	chrX	17024344	+
In-frame	ENST00000407008	ENST00000310394		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000407008	ENST00000395473		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000407008	ENST00000302228		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000407008	ENST00000313648		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
5CDS-intron	ENST00000407008	ENST00000413914		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
5CDS-3UTR	ENST00000407008	ENST00000448970		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
3UTR-3CDS	ENST00000583517	ENST00000310394		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
3UTR-3CDS	ENST00000583517	ENST00000395473		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
3UTR-3CDS	ENST00000583517	ENST00000302228		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
3UTR-3CDS	ENST00000583517	ENST00000313648		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
3UTR-intron	ENST00000583517	ENST00000413914		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
3UTR-3UTR	ENST00000583517	ENST00000448970		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000582037	ENST00000310394		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000582037	ENST00000395473		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000582037	ENST00000302228		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
In-frame	ENST00000582037	ENST00000313648		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
5CDS-intron	ENST00000582037	ENST00000413914		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
5CDS-3UTR	ENST00000582037	ENST00000448970		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	NLK	chr17	26370357	+	LGALS9	chr17	25967598	+
Frame-shit	ENST00000319104	ENST00000518270		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000319104	ENST00000520817		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000319104	ENST00000405786		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000319104	ENST00000357743		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
5CDS-intron	ENST00000319104	ENST00000521417		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000319073	ENST00000518270		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000319073	ENST00000520817		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000319073	ENST00000405786		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000319073	ENST00000357743		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
5CDS-intron	ENST00000319073	ENST00000521417		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000534961	ENST00000518270		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000534961	ENST00000520817		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000534961	ENST00000405786		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000534961	ENST00000357743		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
5CDS-intron	ENST00000534961	ENST00000521417		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000527424	ENST00000518270		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000527424	ENST00000520817		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000527424	ENST00000405786		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
Frame-shit	ENST00000527424	ENST00000357743		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
5CDS-intron	ENST00000527424	ENST00000521417		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000526349	ENST00000518270		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000526349	ENST00000520817		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000526349	ENST00000405786		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
In-frame	ENST00000526349	ENST00000357743		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
5CDS-intron	ENST00000526349	ENST00000521417		TCGA	LD	BRCA	TCGA-AR-A1AJ-01A	RNF170	chr8	42725147	-	GOLGA7	chr8	41355028	+
intron-3CDS	ENST00000261888	ENST00000377648		TCGA	LD	BRCA	TCGA-AR-A1AK-01A	PARP16	chr15	65551802	-	PHF13	chr1	6676817	+
intron-intron	ENST00000261888	ENST00000495385		TCGA	LD	BRCA	TCGA-AR-A1AK-01A	PARP16	chr15	65551802	-	PHF13	chr1	6676817	+
intron-3CDS	ENST00000444347	ENST00000377648		TCGA	LD	BRCA	TCGA-AR-A1AK-01A	PARP16	chr15	65551802	-	PHF13	chr1	6676817	+
intron-intron	ENST00000444347	ENST00000495385		TCGA	LD	BRCA	TCGA-AR-A1AK-01A	PARP16	chr15	65551802	-	PHF13	chr1	6676817	+
intron-3CDS	ENST00000558873	ENST00000377648		TCGA	LD	BRCA	TCGA-AR-A1AK-01A	PARP16	chr15	65551802	-	PHF13	chr1	6676817	+
intron-intron	ENST00000558873	ENST00000495385		TCGA	LD	BRCA	TCGA-AR-A1AK-01A	PARP16	chr15	65551802	-	PHF13	chr1	6676817	+
Frame-shit	ENST00000331134	ENST00000409678		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	NPLOC4	chr17	79603942	-	NOTUM	chr17	79912179	-
Frame-shit	ENST00000374747	ENST00000409678		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	NPLOC4	chr17	79603942	-	NOTUM	chr17	79912179	-
5UTR-3CDS	ENST00000539314	ENST00000409678		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	NPLOC4	chr17	79603942	-	NOTUM	chr17	79912179	-
intron-3CDS	ENST00000572760	ENST00000409678		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	NPLOC4	chr17	79603942	-	NOTUM	chr17	79912179	-
intron-3CDS	ENST00000573876	ENST00000409678		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	NPLOC4	chr17	79603942	-	NOTUM	chr17	79912179	-
intron-3CDS	ENST00000574344	ENST00000409678		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	NPLOC4	chr17	79603942	-	NOTUM	chr17	79912179	-
Frame-shit	ENST00000331923	ENST00000335934		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
Frame-shit	ENST00000331923	ENST00000238721		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
In-frame	ENST00000331923	ENST00000313482		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
In-frame	ENST00000331923	ENST00000407482		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5CDS-intron	ENST00000331923	ENST00000417886		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
Frame-shit	ENST00000290178	ENST00000335934		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
Frame-shit	ENST00000290178	ENST00000238721		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
In-frame	ENST00000290178	ENST00000313482		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
In-frame	ENST00000290178	ENST00000407482		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5CDS-intron	ENST00000290178	ENST00000417886		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5UTR-3CDS	ENST00000472588	ENST00000335934		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5UTR-3CDS	ENST00000472588	ENST00000238721		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5UTR-3CDS	ENST00000472588	ENST00000313482		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5UTR-3CDS	ENST00000472588	ENST00000407482		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
5UTR-intron	ENST00000472588	ENST00000417886		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	PAXBP1	chr21	34131391	-	TP53I3	chr2	24300631	-
Frame-shit	ENST00000263795	ENST00000300289		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
5CDS-intron	ENST00000263795	ENST00000469684		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
5CDS-intron	ENST00000263795	ENST00000538521		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
Frame-shit	ENST00000381246	ENST00000300289		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
5CDS-intron	ENST00000381246	ENST00000469684		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
5CDS-intron	ENST00000381246	ENST00000538521		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
intron-3CDS	ENST00000478130	ENST00000300289		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
intron-intron	ENST00000478130	ENST00000469684		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
intron-intron	ENST00000478130	ENST00000538521		TCGA	LD	BRCA	TCGA-AR-A1AO-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44053622	+
5CDS-5UTR	ENST00000400473	ENST00000304621		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000400473	ENST00000317571		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000400473	ENST00000578150		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000400473	ENST00000584250		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000400473	ENST00000577185		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000400473	ENST00000540918		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000256925	ENST00000304621		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000256925	ENST00000317571		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000256925	ENST00000578150		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000256925	ENST00000584250		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000256925	ENST00000577185		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000256925	ENST00000540918		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
intron-5UTR	ENST00000585061	ENST00000304621		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
intron-5UTR	ENST00000585061	ENST00000317571		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
intron-3UTR	ENST00000585061	ENST00000578150		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
intron-intron	ENST00000585061	ENST00000584250		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
intron-intron	ENST00000585061	ENST00000577185		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
intron-intron	ENST00000585061	ENST00000540918		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000420687	ENST00000304621		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000420687	ENST00000317571		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000420687	ENST00000578150		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000420687	ENST00000584250		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000420687	ENST00000577185		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000420687	ENST00000540918		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CABLES1	chr18	20794018	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000525428	ENST00000432771		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000525428	ENST00000448984		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000263309	ENST00000432771		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000263309	ENST00000448984		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000525064	ENST00000432771		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000525064	ENST00000448984		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000532069	ENST00000432771		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000532069	ENST00000448984		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000528364	ENST00000432771		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
5CDS-5UTR	ENST00000528364	ENST00000448984		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
intron-5UTR	ENST00000533957	ENST00000432771		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
intron-5UTR	ENST00000533957	ENST00000448984		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	CLNS1A	chr11	77348635	-	TRIM49C	chr11	89765565	+
Frame-shit	ENST00000300087	ENST00000219638		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000300087	ENST00000395878		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000300087	ENST00000567212		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000300087	ENST00000567264		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000300087	ENST00000571064		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000563998	ENST00000219638		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000563998	ENST00000395878		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000563998	ENST00000567212		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000563998	ENST00000567264		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000563998	ENST00000571064		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000568589	ENST00000219638		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000568589	ENST00000395878		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000568589	ENST00000567212		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000568589	ENST00000567264		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000568589	ENST00000571064		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000568272	ENST00000219638		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000568272	ENST00000395878		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
Frame-shit	ENST00000568272	ENST00000567212		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000568272	ENST00000567264		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000568272	ENST00000571064		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	DCTN5	chr16	23654344	+	UBFD1	chr16	23581801	+
5CDS-intron	ENST00000261991	ENST00000504772		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
5CDS-intron	ENST00000261991	ENST00000330070		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
5CDS-intron	ENST00000536315	ENST00000504772		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
5CDS-intron	ENST00000536315	ENST00000330070		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
5CDS-intron	ENST00000418736	ENST00000504772		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
5CDS-intron	ENST00000418736	ENST00000330070		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
intron-intron	ENST00000556304	ENST00000504772		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
intron-intron	ENST00000556304	ENST00000330070		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	RPS6KA5	chr14	91444650	-	HOXB2	chr17	46621109	-
In-frame	ENST00000557636	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000557636	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000557636	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000557636	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000557636	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
5CDS-intron	ENST00000557636	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000286650	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000286650	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000286650	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000286650	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000286650	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-intron	ENST00000286650	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000298832	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000298832	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000298832	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000298832	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000298832	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
5CDS-intron	ENST00000298832	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000556893	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000556893	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000556893	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000556893	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000556893	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
5CDS-intron	ENST00000556893	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000554510	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000554510	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000554510	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000554510	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000554510	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
5CDS-intron	ENST00000554510	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556977	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556977	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556977	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556977	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556977	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-intron	ENST00000556977	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000555422	ENST00000541158		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000555422	ENST00000342443		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000555422	ENST00000298171		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000555422	ENST00000554263		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000555422	ENST00000554435		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
intron-intron	ENST00000555422	ENST00000557096		TCGA	LD	BRCA	TCGA-AR-A1AP-01A	TTLL5	chr14	76286504	+	TSHR	chr14	81528492	+
In-frame	ENST00000221957	ENST00000381781		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	PLIN3	chr19	4859602	-	ARRDC5	chr19	4891585	-
In-frame	ENST00000592528	ENST00000381781		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	PLIN3	chr19	4859602	-	ARRDC5	chr19	4891585	-
In-frame	ENST00000585479	ENST00000381781		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	PLIN3	chr19	4859602	-	ARRDC5	chr19	4891585	-
Frame-shit	ENST00000380817	ENST00000359337		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
Frame-shit	ENST00000380817	ENST00000449103		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
5CDS-5UTR	ENST00000380817	ENST00000496720		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
Frame-shit	ENST00000348911	ENST00000359337		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
Frame-shit	ENST00000348911	ENST00000449103		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
5CDS-5UTR	ENST00000348911	ENST00000496720		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
Frame-shit	ENST00000390679	ENST00000359337		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
Frame-shit	ENST00000390679	ENST00000449103		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
5CDS-5UTR	ENST00000390679	ENST00000496720		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
intron-3CDS	ENST00000476293	ENST00000359337		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
intron-3CDS	ENST00000476293	ENST00000449103		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
intron-5UTR	ENST00000476293	ENST00000496720		TCGA	LD	BRCA	TCGA-AR-A1AQ-01A	SBF1	chr22	50899952	-	PLXNB2	chr22	50723094	-
5CDS-5UTR	ENST00000333957	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000333957	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000333957	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000333957	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000333957	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000333957	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000333957	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000333957	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000446597	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000446597	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000446597	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000446597	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000446597	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000446597	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000446597	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000446597	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000536386	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000536386	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000536386	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536386	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536386	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536386	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536386	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536386	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000396028	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000396028	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000396028	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000396028	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000396028	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000396028	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000396028	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000396028	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000542676	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000542676	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000542676	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000542676	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000542676	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000542676	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000542676	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000542676	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000544930	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000544930	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000544930	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000544930	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000544930	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000544930	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000544930	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000544930	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000545552	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000545552	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000545552	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000545552	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000545552	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000545552	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000545552	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000545552	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-5UTR	ENST00000540703	ENST00000447925		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-5UTR	ENST00000540703	ENST00000435379		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-5UTR	ENST00000540703	ENST00000266505		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-intron	ENST00000540703	ENST00000539875		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-intron	ENST00000540703	ENST00000534932		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-intron	ENST00000540703	ENST00000538330		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-intron	ENST00000540703	ENST00000541695		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
intron-intron	ENST00000540703	ENST00000542762		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C2CD5	chr12	22635491	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000378119	ENST00000430948		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000535378		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000537886		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000378214		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000543707		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-intron	ENST00000540769	ENST00000430948		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000535378		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000537886		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000378214		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000543707		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-intron	ENST00000378102	ENST00000430948		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000535378		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000537886		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000378214		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000543707		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	C6orf62	chr6	24709005	-	KIAA0319	chr6	24601436	-
In-frame	ENST00000313835	ENST00000369291		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	GPR89A	chr1	145826888	+	RNF115	chr1	145646115	-
5UTR-3CDS	ENST00000454423	ENST00000369291		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	GPR89A	chr1	145826888	+	RNF115	chr1	145646115	-
5UTR-3CDS	ENST00000534502	ENST00000369291		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	GPR89A	chr1	145826888	+	RNF115	chr1	145646115	-
intron-3CDS	ENST00000462900	ENST00000369291		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	GPR89A	chr1	145826888	+	RNF115	chr1	145646115	-
intron-3CDS	ENST00000478703	ENST00000369291		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	GPR89A	chr1	145826888	+	RNF115	chr1	145646115	-
In-frame	ENST00000406337	ENST00000347580		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
In-frame	ENST00000406337	ENST00000379853		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
In-frame	ENST00000406337	ENST00000265708		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
In-frame	ENST00000406337	ENST00000521880		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
5CDS-5UTR	ENST00000406337	ENST00000523181		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000265713	ENST00000347580		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000265713	ENST00000379853		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000265713	ENST00000265708		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000265713	ENST00000521880		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
5CDS-5UTR	ENST00000265713	ENST00000523181		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000396930	ENST00000347580		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000396930	ENST00000379853		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000396930	ENST00000265708		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000396930	ENST00000521880		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
5CDS-5UTR	ENST00000396930	ENST00000523181		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000485568	ENST00000347580		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000485568	ENST00000379853		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000485568	ENST00000265708		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
Frame-shit	ENST00000485568	ENST00000521880		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
5CDS-5UTR	ENST00000485568	ENST00000523181		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	KAT6A	chr8	41812814	-	ADAM2	chr8	39694731	-
In-frame	ENST00000447925	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000447925	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000447925	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000447925	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000447925	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000447925	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000447925	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000447925	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000435379	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000435379	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000435379	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000435379	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000435379	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000435379	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000435379	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000435379	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000266505	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000266505	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000266505	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000266505	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000266505	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000266505	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000266505	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000266505	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
Frame-shit	ENST00000539875	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
Frame-shit	ENST00000539875	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
Frame-shit	ENST00000539875	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000539875	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000539875	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000539875	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000539875	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000539875	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000534932	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000534932	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000534932	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000534932	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000534932	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000534932	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000534932	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000534932	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000538330	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000538330	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000538330	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000538330	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000538330	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000538330	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000538330	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000538330	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000541695	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000541695	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
In-frame	ENST00000541695	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000541695	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000541695	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000541695	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000541695	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
5CDS-intron	ENST00000541695	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000542762	ENST00000395872		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000542762	ENST00000539239		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000542762	ENST00000545234		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000542762	ENST00000538310		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000542762	ENST00000354417		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000542762	ENST00000201015		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000542762	ENST00000535992		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-intron	ENST00000542762	ENST00000395868		TCGA	LD	BRCA	TCGA-AR-A1AR-01A	PLCZ1	chr12	18847844	-	PTHLH	chr12	28111501	-
intron-3CDS	ENST00000385231	ENST00000373091		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	C1orf132	chr1	208041271	-	GRIK3	chr1	37356697	-
intron-3CDS	ENST00000385231	ENST00000373093		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	C1orf132	chr1	208041271	-	GRIK3	chr1	37356697	-
intron-intron	ENST00000385231	ENST00000462621		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	C1orf132	chr1	208041271	-	GRIK3	chr1	37356697	-
intron-3CDS	ENST00000385055	ENST00000373091		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	C1orf132	chr1	208041271	-	GRIK3	chr1	37356697	-
intron-3CDS	ENST00000385055	ENST00000373093		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	C1orf132	chr1	208041271	-	GRIK3	chr1	37356697	-
intron-intron	ENST00000385055	ENST00000462621		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	C1orf132	chr1	208041271	-	GRIK3	chr1	37356697	-
5CDS-intron	ENST00000225719	ENST00000583688		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
5CDS-intron	ENST00000225719	ENST00000330889		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
5CDS-intron	ENST00000225719	ENST00000580525		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
5CDS-intron	ENST00000543464	ENST00000583688		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
5CDS-intron	ENST00000543464	ENST00000330889		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
5CDS-intron	ENST00000543464	ENST00000580525		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
intron-intron	ENST00000584051	ENST00000583688		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
intron-intron	ENST00000584051	ENST00000330889		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
intron-intron	ENST00000584051	ENST00000580525		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	CPD	chr17	28712254	+	ADAP2	chr17	29281496	+
In-frame	ENST00000583610	ENST00000269554		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000583610	ENST00000311500		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
In-frame	ENST00000394294	ENST00000269554		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000394294	ENST00000311500		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
In-frame	ENST00000264658	ENST00000269554		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000264658	ENST00000311500		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
intron-3CDS	ENST00000577399	ENST00000269554		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
intron-intron	ENST00000577399	ENST00000311500		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	FBXL20	chr17	37557614	-	PIP4K2B	chr17	36927525	-
Frame-shit	ENST00000307602	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
5CDS-intron	ENST00000307602	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
5CDS-intron	ENST00000307602	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
5CDS-intron	ENST00000307602	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
5CDS-3UTR	ENST00000307602	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
intron-3CDS	ENST00000524839	ENST00000394395		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
intron-intron	ENST00000524839	ENST00000586023		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
intron-intron	ENST00000524839	ENST00000225396		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
intron-intron	ENST00000524839	ENST00000417170		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
intron-3UTR	ENST00000524839	ENST00000591992		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	HOOK3	chr8	42873637	+	TADA2A	chr17	35830504	+
5CDS-5UTR	ENST00000372009	ENST00000484834		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000372009	ENST00000367229		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000372009	ENST00000255427		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000372009	ENST00000535569		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-5UTR	ENST00000361297	ENST00000484834		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000361297	ENST00000367229		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000361297	ENST00000255427		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5CDS-intron	ENST00000361297	ENST00000535569		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
intron-5UTR	ENST00000477968	ENST00000484834		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
intron-intron	ENST00000477968	ENST00000367229		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
intron-intron	ENST00000477968	ENST00000255427		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
intron-intron	ENST00000477968	ENST00000535569		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	MAST2	chr1	46348067	+	CHIT1	chr1	203209786	-
5UTR-3CDS	ENST00000268864	ENST00000261497		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	RASL10B	chr17	34058897	+	USP22	chr17	20911309	-
5UTR-3CDS	ENST00000268864	ENST00000537526		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	RASL10B	chr17	34058897	+	USP22	chr17	20911309	-
5UTR-intron	ENST00000268864	ENST00000455117		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	RASL10B	chr17	34058897	+	USP22	chr17	20911309	-
intron-3CDS	ENST00000587350	ENST00000261497		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	RASL10B	chr17	34058897	+	USP22	chr17	20911309	-
intron-3CDS	ENST00000587350	ENST00000537526		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	RASL10B	chr17	34058897	+	USP22	chr17	20911309	-
intron-intron	ENST00000587350	ENST00000455117		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	RASL10B	chr17	34058897	+	USP22	chr17	20911309	-
intron-3CDS	ENST00000394562	ENST00000264639		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000394562	ENST00000541736		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000304905	ENST00000264639		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000304905	ENST00000541736		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000452764	ENST00000264639		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000452764	ENST00000541736		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000460530	ENST00000264639		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
intron-3CDS	ENST00000460530	ENST00000541736		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SLFN12	chr17	33757519	-	PSMD3	chr17	38151446	+
5CDS-intron	ENST00000269033	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000269033	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000269033	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000540801	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000540801	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000540801	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
intron-intron	ENST00000324677	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
intron-intron	ENST00000324677	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
intron-3UTR	ENST00000324677	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000582084	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000582084	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000582084	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000590153	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000590153	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000590153	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000579954	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-intron	ENST00000579954	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
5CDS-3UTR	ENST00000579954	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	SSH2	chr17	28256956	-	CDK12	chr17	37707291	+
3UTR-intron	ENST00000574792	ENST00000391967		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	TSSK3	chr1	32819142	+	LAD1	chr1	201346806	-
3UTR-intron	ENST00000574792	ENST00000367313		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	TSSK3	chr1	32819142	+	LAD1	chr1	201346806	-
3UTR-intron	ENST00000574792	ENST00000488842		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	TSSK3	chr1	32819142	+	LAD1	chr1	201346806	-
intron-intron	ENST00000373534	ENST00000391967		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	TSSK3	chr1	32819142	+	LAD1	chr1	201346806	-
intron-intron	ENST00000373534	ENST00000367313		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	TSSK3	chr1	32819142	+	LAD1	chr1	201346806	-
intron-intron	ENST00000373534	ENST00000488842		TCGA	LD	BRCA	TCGA-AR-A1AT-01A	TSSK3	chr1	32819142	+	LAD1	chr1	201346806	-
intron-5UTR	ENST00000343245	ENST00000296978		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000343245	ENST00000545622		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000343245	ENST00000392429		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000369070	ENST00000296978		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000369070	ENST00000545622		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000369070	ENST00000392429		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000369076	ENST00000296978		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000369076	ENST00000545622		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000369076	ENST00000392429		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000360666	ENST00000296978		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000360666	ENST00000545622		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000360666	ENST00000392429		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000475645	ENST00000296978		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000475645	ENST00000545622		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000475645	ENST00000392429		TCGA	LD	BRCA	TCGA-AR-A1AU-01A	ATG5	chr6	106773401	-	TMEM200A	chr6	130761552	+
intron-3CDS	ENST00000355303	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
intron-3CDS	ENST00000398543	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
intron-3CDS	ENST00000538023	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
Frame-shit	ENST00000316296	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
intron-3CDS	ENST00000530676	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
intron-3CDS	ENST00000531349	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
intron-3CDS	ENST00000525494	ENST00000530162		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ANO1	chr11	70009537	+	OR4D10	chr11	59245014	+
In-frame	ENST00000334344	ENST00000301042		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
In-frame	ENST00000334344	ENST00000544117		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
5CDS-5UTR	ENST00000334344	ENST00000448928		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
5CDS-5UTR	ENST00000334344	ENST00000547026		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
5UTR-3CDS	ENST00000422737	ENST00000301042		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
5UTR-3CDS	ENST00000422737	ENST00000544117		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
5UTR-5UTR	ENST00000422737	ENST00000448928		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
5UTR-5UTR	ENST00000422737	ENST00000547026		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-3CDS	ENST00000479608	ENST00000301042		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-3CDS	ENST00000479608	ENST00000544117		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-5UTR	ENST00000479608	ENST00000448928		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-5UTR	ENST00000479608	ENST00000547026		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-3CDS	ENST00000444670	ENST00000301042		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-3CDS	ENST00000444670	ENST00000544117		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-5UTR	ENST00000444670	ENST00000448928		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-5UTR	ENST00000444670	ENST00000547026		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-3CDS	ENST00000457135	ENST00000301042		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-3CDS	ENST00000457135	ENST00000544117		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-5UTR	ENST00000457135	ENST00000448928		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
intron-5UTR	ENST00000457135	ENST00000547026		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	ARID2	chr12	46125097	+	ZNF641	chr12	48741898	-
In-frame	ENST00000334126	ENST00000299563		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	C2CD3	chr11	73879389	-	RNF169	chr11	74500671	+
In-frame	ENST00000313663	ENST00000299563		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	C2CD3	chr11	73879389	-	RNF169	chr11	74500671	+
intron-3CDS	ENST00000542452	ENST00000299563		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	C2CD3	chr11	73879389	-	RNF169	chr11	74500671	+
In-frame	ENST00000539061	ENST00000299563		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	C2CD3	chr11	73879389	-	RNF169	chr11	74500671	+
In-frame	ENST00000281928	ENST00000338193		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	MED13L	chr12	116675273	-	PRIM1	chr12	57133147	-
5CDS-intron	ENST00000281928	ENST00000552408		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	MED13L	chr12	116675273	-	PRIM1	chr12	57133147	-
5UTR-3CDS	ENST00000551197	ENST00000338193		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	MED13L	chr12	116675273	-	PRIM1	chr12	57133147	-
5UTR-intron	ENST00000551197	ENST00000552408		TCGA	LD	BRCA	TCGA-AR-A1AV-01A	MED13L	chr12	116675273	-	PRIM1	chr12	57133147	-
Frame-shit	ENST00000351193	ENST00000297273		TCGA	LD	BRCA	TCGA-AR-A1AW-01A	NMD3	chr3	160965118	+	CASD1	chr7	94146872	+
Frame-shit	ENST00000472947	ENST00000297273		TCGA	LD	BRCA	TCGA-AR-A1AW-01A	NMD3	chr3	160965118	+	CASD1	chr7	94146872	+
Frame-shit	ENST00000460469	ENST00000297273		TCGA	LD	BRCA	TCGA-AR-A1AW-01A	NMD3	chr3	160965118	+	CASD1	chr7	94146872	+
intron-3CDS	ENST00000478160	ENST00000297273		TCGA	LD	BRCA	TCGA-AR-A1AW-01A	NMD3	chr3	160965118	+	CASD1	chr7	94146872	+
Frame-shit	ENST00000376177	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
In-frame	ENST00000396172	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
In-frame	ENST00000417556	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
Frame-shit	ENST00000458640	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000462421	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000415382	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
In-frame	ENST00000453105	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
3UTR-3CDS	ENST00000449074	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000552820	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000463430	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000438578	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000415689	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000456476	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000412106	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000547039	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000550435	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000453488	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000453138	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000552288	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000441425	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000456666	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000546633	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000483957	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000430703	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000416863	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000413678	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000414440	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000547489	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000551031	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000468089	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000400293	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000400296	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000400295	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000383508	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000548340	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000548331	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000495391	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000446341	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000548614	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000448296	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000412330	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000445218	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000546637	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000489325	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000450987	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000431360	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000430784	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000550217	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000470514	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
intron-3CDS	ENST00000549374	ENST00000230381		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	DDX39B	chr6	31506540	-	PRPH2	chr6	42672349	-
5CDS-intron	ENST00000398645	ENST00000524814		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
5CDS-intron	ENST00000398645	ENST00000539188		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
5CDS-intron	ENST00000398645	ENST00000312629		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
5CDS-intron	ENST00000529006	ENST00000524814		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
5CDS-intron	ENST00000529006	ENST00000539188		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
5CDS-intron	ENST00000529006	ENST00000312629		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000526258	ENST00000524814		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000526258	ENST00000539188		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000526258	ENST00000312629		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000308783	ENST00000524814		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000308783	ENST00000539188		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000308783	ENST00000312629		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000530342	ENST00000524814		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000530342	ENST00000539188		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
intron-intron	ENST00000530342	ENST00000312629		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	KDM2A	chr11	66888829	+	RPS6KB2	chr11	67200811	+
In-frame	ENST00000256429	ENST00000256935		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
In-frame	ENST00000256429	ENST00000540750		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
In-frame	ENST00000256429	ENST00000520908		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
5CDS-3UTR	ENST00000256429	ENST00000523351		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000579025	ENST00000256935		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000579025	ENST00000540750		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000579025	ENST00000520908		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3UTR	ENST00000579025	ENST00000523351		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000398398	ENST00000256935		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000398398	ENST00000540750		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000398398	ENST00000520908		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3UTR	ENST00000398398	ENST00000523351		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000583046	ENST00000256935		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000583046	ENST00000540750		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3CDS	ENST00000583046	ENST00000520908		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-3UTR	ENST00000583046	ENST00000523351		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	MBD2	chr18	51715244	-	DOCK2	chr5	169502951	+
intron-intron	ENST00000428558	ENST00000349769		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	RECQL4	chr8	145739406	-	CPSF1	chr8	145623429	-
intron-intron	ENST00000428558	ENST00000531727		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	RECQL4	chr8	145739406	-	CPSF1	chr8	145623429	-
intron-intron	ENST00000532237	ENST00000349769		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	RECQL4	chr8	145739406	-	CPSF1	chr8	145623429	-
intron-intron	ENST00000532237	ENST00000531727		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	RECQL4	chr8	145739406	-	CPSF1	chr8	145623429	-
5CDS-intron	ENST00000377897	ENST00000360421		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000377897	ENST00000377871		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000377897	ENST00000458333		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000377897	ENST00000421062		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000377897	ENST00000537349		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294179	ENST00000360421		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294179	ENST00000377871		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294179	ENST00000458333		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294179	ENST00000421062		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294179	ENST00000537349		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000394690	ENST00000360421		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000394690	ENST00000377871		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000394690	ENST00000458333		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000394690	ENST00000421062		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000394690	ENST00000537349		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000541317	ENST00000360421		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000541317	ENST00000377871		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000541317	ENST00000458333		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000541317	ENST00000421062		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000541317	ENST00000537349		TCGA	LD	BRCA	TCGA-AR-A1AY-01A	STX5	chr11	62591638	-	SLC22A6	chr11	62703958	-
5CDS-3UTR	ENST00000358204	ENST00000597158		TCGA	LD	BRCA	TCGA-AR-A24H-01A	TES	chr7	115874673	+	ZNF137P	chr19	53098870	+
5UTR-3UTR	ENST00000537767	ENST00000597158		TCGA	LD	BRCA	TCGA-AR-A24H-01A	TES	chr7	115874673	+	ZNF137P	chr19	53098870	+
5CDS-3UTR	ENST00000393481	ENST00000597158		TCGA	LD	BRCA	TCGA-AR-A24H-01A	TES	chr7	115874673	+	ZNF137P	chr19	53098870	+
3UTR-3UTR	ENST00000485009	ENST00000597158		TCGA	LD	BRCA	TCGA-AR-A24H-01A	TES	chr7	115874673	+	ZNF137P	chr19	53098870	+
3UTR-3CDS	ENST00000597158	ENST00000358204		TCGA	LD	BRCA	TCGA-AR-A24H-01A	ZNF137P	chr19	53095481	+	TES	chr7	115889074	+
3UTR-intron	ENST00000597158	ENST00000537767		TCGA	LD	BRCA	TCGA-AR-A24H-01A	ZNF137P	chr19	53095481	+	TES	chr7	115889074	+
3UTR-intron	ENST00000597158	ENST00000393481		TCGA	LD	BRCA	TCGA-AR-A24H-01A	ZNF137P	chr19	53095481	+	TES	chr7	115889074	+
3UTR-3UTR	ENST00000597158	ENST00000485009		TCGA	LD	BRCA	TCGA-AR-A24H-01A	ZNF137P	chr19	53095481	+	TES	chr7	115889074	+
5CDS-5UTR	ENST00000407228	ENST00000568047		TCGA	LD	BRCA	TCGA-AR-A24K-01A	TOX3	chr16	52479906	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000407228	ENST00000320640		TCGA	LD	BRCA	TCGA-AR-A24K-01A	TOX3	chr16	52479906	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000407228	ENST00000544001		TCGA	LD	BRCA	TCGA-AR-A24K-01A	TOX3	chr16	52479906	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000219746	ENST00000568047		TCGA	LD	BRCA	TCGA-AR-A24K-01A	TOX3	chr16	52479906	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000219746	ENST00000320640		TCGA	LD	BRCA	TCGA-AR-A24K-01A	TOX3	chr16	52479906	-	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000219746	ENST00000544001		TCGA	LD	BRCA	TCGA-AR-A24K-01A	TOX3	chr16	52479906	-	ITFG1	chr16	47196575	-
5CDS-intron	ENST00000539909	ENST00000372725		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-5UTR	ENST00000539909	ENST00000372724		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-5UTR	ENST00000539909	ENST00000287239		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000539909	ENST00000372714		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000539909	ENST00000372711		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000539909	ENST00000490365		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000286621	ENST00000372725		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-5UTR	ENST00000286621	ENST00000372724		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-5UTR	ENST00000286621	ENST00000287239		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000286621	ENST00000372714		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000286621	ENST00000372711		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000286621	ENST00000490365		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000372734	ENST00000372725		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-5UTR	ENST00000372734	ENST00000372724		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-5UTR	ENST00000372734	ENST00000287239		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000372734	ENST00000372714		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000372734	ENST00000372711		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
5CDS-intron	ENST00000372734	ENST00000490365		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000541550	ENST00000372725		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-5UTR	ENST00000541550	ENST00000372724		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-5UTR	ENST00000541550	ENST00000287239		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000541550	ENST00000372714		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000541550	ENST00000372711		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000541550	ENST00000490365		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000467840	ENST00000372725		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-5UTR	ENST00000467840	ENST00000372724		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-5UTR	ENST00000467840	ENST00000287239		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000467840	ENST00000372714		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000467840	ENST00000372711		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-intron	ENST00000467840	ENST00000490365		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ADK	chr10	75984349	+	KAT6B	chr10	76598441	+
intron-3CDS	ENST00000359373	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000495878	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000455638	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000393605	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000334211	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
5UTR-3CDS	ENST00000393609	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000426523	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000429686	ENST00000330574		TCGA	LD	BRCA	TCGA-AR-A24L-01A	ARAP1	chr11	72463373	-	INTS5	chr11	62417471	-
Frame-shit	ENST00000360403	ENST00000372425		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000360403	ENST00000583037		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000360403	ENST00000372434		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000360403	ENST00000372432		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000360403	ENST00000372426		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000360403	ENST00000486909		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000372183	ENST00000372425		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000372183	ENST00000583037		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000372183	ENST00000372434		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000372183	ENST00000372432		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000372183	ENST00000372426		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
Frame-shit	ENST00000372183	ENST00000486909		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000480675	ENST00000372425		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000480675	ENST00000583037		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000480675	ENST00000372434		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000480675	ENST00000372432		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000480675	ENST00000372426		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
5UTR-3CDS	ENST00000480675	ENST00000486909		TCGA	LD	BRCA	TCGA-AR-A24L-01A	EIF2B3	chr1	45392300	-	HYI	chr1	43917990	-
intron-5UTR	ENST00000261596	ENST00000269187		TCGA	LD	BRCA	TCGA-AR-A24L-01A	LPIN2	chr18	3013085	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000261596	ENST00000590986		TCGA	LD	BRCA	TCGA-AR-A24L-01A	LPIN2	chr18	3013085	-	SLC39A6	chr18	33706979	-
intron-intron	ENST00000261596	ENST00000440549		TCGA	LD	BRCA	TCGA-AR-A24L-01A	LPIN2	chr18	3013085	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000581568	ENST00000269187		TCGA	LD	BRCA	TCGA-AR-A24L-01A	LPIN2	chr18	3013085	-	SLC39A6	chr18	33706979	-
intron-5UTR	ENST00000581568	ENST00000590986		TCGA	LD	BRCA	TCGA-AR-A24L-01A	LPIN2	chr18	3013085	-	SLC39A6	chr18	33706979	-
intron-intron	ENST00000581568	ENST00000440549		TCGA	LD	BRCA	TCGA-AR-A24L-01A	LPIN2	chr18	3013085	-	SLC39A6	chr18	33706979	-
5CDS-3UTR	ENST00000373053	ENST00000372837		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
5CDS-3UTR	ENST00000373053	ENST00000372833		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
5CDS-3UTR	ENST00000357157	ENST00000372837		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
5CDS-3UTR	ENST00000357157	ENST00000372833		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
5CDS-3UTR	ENST00000536019	ENST00000372837		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
5CDS-3UTR	ENST00000536019	ENST00000372833		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
intron-3UTR	ENST00000605416	ENST00000372837		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
intron-3UTR	ENST00000605416	ENST00000372833		TCGA	LD	BRCA	TCGA-AR-A24L-01A	MCU	chr10	74594186	+	CHCHD1	chr10	75542832	+
In-frame	ENST00000405201	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-3UTR	ENST00000405201	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-5UTR	ENST00000405201	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
Frame-shit	ENST00000404621	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-3UTR	ENST00000404621	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-5UTR	ENST00000404621	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5UTR-3CDS	ENST00000404121	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5UTR-3UTR	ENST00000404121	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5UTR-5UTR	ENST00000404121	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
Frame-shit	ENST00000356219	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-3UTR	ENST00000356219	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-5UTR	ENST00000356219	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
Frame-shit	ENST00000397355	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-3UTR	ENST00000397355	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-5UTR	ENST00000397355	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
Frame-shit	ENST00000429285	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-3UTR	ENST00000429285	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-5UTR	ENST00000429285	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A24L-01A	NCOR2	chr12	124922476	-	RABGAP1	chr9	125827627	+
5CDS-5UTR	ENST00000353265	ENST00000586448		TCGA	LD	BRCA	TCGA-AR-A24L-01A	PARD6G	chr18	77960593	-	SLC14A2	chr18	43063198	+
5CDS-intron	ENST00000353265	ENST00000255226		TCGA	LD	BRCA	TCGA-AR-A24L-01A	PARD6G	chr18	77960593	-	SLC14A2	chr18	43063198	+
5CDS-intron	ENST00000353265	ENST00000589658		TCGA	LD	BRCA	TCGA-AR-A24L-01A	PARD6G	chr18	77960593	-	SLC14A2	chr18	43063198	+
5CDS-5UTR	ENST00000470488	ENST00000586448		TCGA	LD	BRCA	TCGA-AR-A24L-01A	PARD6G	chr18	77960593	-	SLC14A2	chr18	43063198	+
5CDS-intron	ENST00000470488	ENST00000255226		TCGA	LD	BRCA	TCGA-AR-A24L-01A	PARD6G	chr18	77960593	-	SLC14A2	chr18	43063198	+
5CDS-intron	ENST00000470488	ENST00000589658		TCGA	LD	BRCA	TCGA-AR-A24L-01A	PARD6G	chr18	77960593	-	SLC14A2	chr18	43063198	+
intron-3CDS	ENST00000395347	ENST00000539909		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
intron-3CDS	ENST00000395347	ENST00000286621		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
intron-3CDS	ENST00000395347	ENST00000372734		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
intron-3CDS	ENST00000395347	ENST00000541550		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
intron-intron	ENST00000395347	ENST00000467840		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000395348	ENST00000539909		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000395348	ENST00000286621		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000395348	ENST00000372734		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000395348	ENST00000541550		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-intron	ENST00000395348	ENST00000467840		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000490066	ENST00000539909		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000490066	ENST00000286621		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000490066	ENST00000372734		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000490066	ENST00000541550		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5UTR-intron	ENST00000490066	ENST00000467840		TCGA	LD	BRCA	TCGA-AR-A24L-01A	SLC16A9	chr10	61469237	-	ADK	chr10	76468079	+
5CDS-5UTR	ENST00000346798	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5CDS-5UTR	ENST00000354192	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5CDS-5UTR	ENST00000348990	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5CDS-5UTR	ENST00000357903	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5CDS-5UTR	ENST00000358918	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5CDS-5UTR	ENST00000359726	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
intron-5UTR	ENST00000448388	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
intron-5UTR	ENST00000440126	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5CDS-5UTR	ENST00000439274	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
5UTR-5UTR	ENST00000474136	ENST00000331710		TCGA	LD	BRCA	TCGA-AR-A24M-01A	APP	chr21	27542882	-	TBK1	chr12	64849620	+
3UTR-3CDS	ENST00000461377	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-3CDS	ENST00000461377	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-5UTR	ENST00000461377	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-5UTR	ENST00000461377	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
3UTR-3UTR	ENST00000461377	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000258781	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000258781	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000258781	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000258781	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000258781	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000544363	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000544363	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000544363	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000544363	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000544363	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-3CDS	ENST00000541586	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-3CDS	ENST00000541586	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-5UTR	ENST00000541586	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-5UTR	ENST00000541586	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
intron-3UTR	ENST00000541586	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000475551	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000475551	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000475551	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000475551	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000475551	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000381112	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000381112	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000381112	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000381112	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000381112	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000474617	ENST00000451562		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
In-frame	ENST00000474617	ENST00000468812		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000474617	ENST00000489459		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-5UTR	ENST00000474617	ENST00000355968		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
5CDS-3UTR	ENST00000474617	ENST00000480603		TCGA	LD	BRCA	TCGA-AR-A24O-01A	CCM2	chr7	45078025	+	PPIA	chr7	44838846	+
Frame-shit	ENST00000310864	ENST00000273691		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
Frame-shit	ENST00000310864	ENST00000344209		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
Frame-shit	ENST00000310864	ENST00000393631		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
In-frame	ENST00000310864	ENST00000462014		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
5CDS-intron	ENST00000310864	ENST00000460554		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
Frame-shit	ENST00000349820	ENST00000273691		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
Frame-shit	ENST00000349820	ENST00000344209		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
Frame-shit	ENST00000349820	ENST00000393631		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
In-frame	ENST00000349820	ENST00000462014		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
5CDS-intron	ENST00000349820	ENST00000460554		TCGA	LD	BRCA	TCGA-AR-A24O-01A	IQCB1	chr3	121508920	-	ILDR1	chr3	121707255	-
In-frame	ENST00000355528	ENST00000262613		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000355528	ENST00000413388		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000397466	ENST00000262613		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000397466	ENST00000413388		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000539345	ENST00000262613		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000539345	ENST00000413388		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
intron-3CDS	ENST00000576691	ENST00000262613		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
intron-5UTR	ENST00000576691	ENST00000413388		TCGA	LD	BRCA	TCGA-AR-A24O-01A	TBCD	chr17	80847573	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000346672	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000346672	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000360962	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000360962	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
5UTR-3CDS	ENST00000527634	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
5UTR-3CDS	ENST00000527634	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000540737	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000540737	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
5UTR-3CDS	ENST00000532565	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
5UTR-3CDS	ENST00000532565	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000525449	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
In-frame	ENST00000525449	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
3UTR-3CDS	ENST00000527368	ENST00000286544		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
3UTR-3CDS	ENST00000527368	ENST00000534936		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	C11orf80	chr11	66526567	+	FAM161B	chr14	74409418	-
5CDS-intron	ENST00000353442	ENST00000458129		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5CDS-intron	ENST00000353442	ENST00000275815		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5UTR-intron	ENST00000359422	ENST00000458129		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5UTR-intron	ENST00000359422	ENST00000275815		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5CDS-intron	ENST00000354505	ENST00000458129		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5CDS-intron	ENST00000354505	ENST00000275815		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5CDS-intron	ENST00000540390	ENST00000458129		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
5CDS-intron	ENST00000540390	ENST00000275815		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
intron-intron	ENST00000430825	ENST00000458129		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
intron-intron	ENST00000430825	ENST00000275815		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	LMBR1	chr7	156589084	-	EPHA1	chr7	143098699	-
Frame-shit	ENST00000487861	ENST00000356136		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487861	ENST00000528420		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487861	ENST00000533454		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
In-frame	ENST00000487861	ENST00000531818		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487861	ENST00000532130		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487861	ENST00000539288		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000487861	ENST00000525872		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000487861	ENST00000538870		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000471583	ENST00000356136		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000471583	ENST00000528420		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000471583	ENST00000533454		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
In-frame	ENST00000471583	ENST00000531818		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000471583	ENST00000532130		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000471583	ENST00000539288		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000471583	ENST00000525872		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000471583	ENST00000538870		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487270	ENST00000356136		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487270	ENST00000528420		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487270	ENST00000533454		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
In-frame	ENST00000487270	ENST00000531818		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487270	ENST00000532130		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000487270	ENST00000539288		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000487270	ENST00000525872		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000487270	ENST00000538870		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000488612	ENST00000356136		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000488612	ENST00000528420		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000488612	ENST00000533454		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
In-frame	ENST00000488612	ENST00000531818		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000488612	ENST00000532130		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000488612	ENST00000539288		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000488612	ENST00000525872		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000488612	ENST00000538870		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000390683	ENST00000356136		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000390683	ENST00000528420		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000390683	ENST00000533454		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
In-frame	ENST00000390683	ENST00000531818		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000390683	ENST00000532130		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000390683	ENST00000539288		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000390683	ENST00000525872		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000390683	ENST00000538870		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-3CDS	ENST00000469165	ENST00000356136		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-3CDS	ENST00000469165	ENST00000528420		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-3CDS	ENST00000469165	ENST00000533454		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-3CDS	ENST00000469165	ENST00000531818		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-3CDS	ENST00000469165	ENST00000532130		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-3CDS	ENST00000469165	ENST00000539288		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-intron	ENST00000469165	ENST00000525872		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
3UTR-intron	ENST00000469165	ENST00000538870		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RAD51B	chr14	68934967	+	UVRAG	chr11	75851755	+
5CDS-5UTR	ENST00000523189	ENST00000265295		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RANBP17	chr5	170308900	+	SPDL1	chr5	169015398	+
5CDS-3UTR	ENST00000523189	ENST00000510751		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RANBP17	chr5	170308900	+	SPDL1	chr5	169015398	+
intron-5UTR	ENST00000521759	ENST00000265295		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RANBP17	chr5	170308900	+	SPDL1	chr5	169015398	+
intron-3UTR	ENST00000521759	ENST00000510751		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	RANBP17	chr5	170308900	+	SPDL1	chr5	169015398	+
5CDS-intron	ENST00000320230	ENST00000323541		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000454838		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000449825		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000323578		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000429789		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000336845		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000528581		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000436108		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000320230	ENST00000526714		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000323541		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000454838		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000449825		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000323578		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000429789		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000336845		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000528581		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000436108		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
5CDS-intron	ENST00000531214	ENST00000526714		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SLC25A22	chr11	794458	-	CHID1	chr11	874910	-
In-frame	ENST00000316399	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-intron	ENST00000316399	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
In-frame	ENST00000396356	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-intron	ENST00000396356	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
In-frame	ENST00000352083	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-intron	ENST00000352083	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
Frame-shit	ENST00000528252	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-intron	ENST00000528252	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
In-frame	ENST00000527619	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-intron	ENST00000527619	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
Frame-shit	ENST00000528429	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-intron	ENST00000528429	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
intron-3CDS	ENST00000533658	ENST00000227756		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
intron-intron	ENST00000533658	ENST00000526064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	SOX6	chr11	16339992	-	GALNT18	chr11	11400811	-
5CDS-5UTR	ENST00000357613	ENST00000332272		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
5CDS-5UTR	ENST00000357613	ENST00000390664		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
intron-5UTR	ENST00000569540	ENST00000332272		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
intron-5UTR	ENST00000569540	ENST00000390664		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
5CDS-5UTR	ENST00000561878	ENST00000332272		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
5CDS-5UTR	ENST00000561878	ENST00000390664		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
intron-5UTR	ENST00000567796	ENST00000332272		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
intron-5UTR	ENST00000567796	ENST00000390664		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
intron-5UTR	ENST00000566980	ENST00000332272		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
intron-5UTR	ENST00000566980	ENST00000390664		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
5CDS-5UTR	ENST00000569276	ENST00000332272		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
5CDS-5UTR	ENST00000569276	ENST00000390664		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	TMEM170A	chr16	75498366	-	CHST6	chr16	75513742	-
5CDS-intron	ENST00000356136	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000356136	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000356136	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000356136	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000356136	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000356136	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000528420	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000528420	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000528420	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000528420	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000528420	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000528420	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000533454	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000533454	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000533454	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000533454	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000533454	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000533454	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000531818	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000531818	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000531818	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000531818	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000531818	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000531818	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000532130	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000532130	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000532130	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000532130	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000532130	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000532130	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000539288	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000539288	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000539288	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000539288	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000539288	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000539288	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000525872	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000525872	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000525872	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000525872	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000525872	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000525872	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-intron	ENST00000538870	ENST00000487861		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-intron	ENST00000538870	ENST00000471583		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-intron	ENST00000538870	ENST00000487270		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-intron	ENST00000538870	ENST00000488612		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-intron	ENST00000538870	ENST00000390683		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-intron	ENST00000538870	ENST00000469165		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	UVRAG	chr11	75827059	+	RAD51B	chr14	69061202	+
5UTR-3CDS	ENST00000457913	ENST00000372067		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000417285		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000324450		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000413642		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000372055		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000482630		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000425836		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000372064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000372077		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000520948		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000523873		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000523950		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000518689		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000523125		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000457104		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000457913	ENST00000518824		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-5UTR	ENST00000457913	ENST00000230480		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000372067		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000417285		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000324450		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000413642		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000372055		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000482630		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000425836		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000372064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000372077		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000520948		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000523873		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000523950		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000518689		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000523125		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000457104		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-3CDS	ENST00000277225	ENST00000518824		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
5UTR-5UTR	ENST00000277225	ENST00000230480		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000372067		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000417285		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000324450		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000413642		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000372055		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000482630		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000425836		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000372064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000372077		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000520948		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000523873		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000523950		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000518689		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000523125		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000457104		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000441147	ENST00000518824		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-5UTR	ENST00000441147	ENST00000230480		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000372067		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000417285		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000324450		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000413642		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000372055		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000482630		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000425836		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000372064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000372077		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000520948		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000523873		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000523950		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000518689		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000523125		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000457104		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000542028	ENST00000518824		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-5UTR	ENST00000542028	ENST00000230480		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000372067		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000417285		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000324450		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000413642		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000372055		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000482630		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000425836		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000372064		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000372077		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000520948		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000523873		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000523950		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000518689		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000523125		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000457104		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000497489	ENST00000518824		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
intron-5UTR	ENST00000497489	ENST00000230480		TCGA	LD	BRCA	TCGA-AR-A24Q-01A	ZNF462	chr9	109625636	+	VEGFA	chr6	43742078	+
3UTR-3CDS	ENST00000335255	ENST00000370283		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
3UTR-3CDS	ENST00000335255	ENST00000547204		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
3UTR-3CDS	ENST00000335255	ENST00000519604		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
3UTR-3CDS	ENST00000335255	ENST00000519273		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
3UTR-3CDS	ENST00000335255	ENST00000370275		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
3UTR-3CDS	ENST00000335255	ENST00000353546		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
3UTR-intron	ENST00000335255	ENST00000518794		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-3CDS	ENST00000529652	ENST00000370283		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-3CDS	ENST00000529652	ENST00000547204		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-3CDS	ENST00000529652	ENST00000519604		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-3CDS	ENST00000529652	ENST00000519273		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-3CDS	ENST00000529652	ENST00000370275		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-3CDS	ENST00000529652	ENST00000353546		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
intron-intron	ENST00000529652	ENST00000518794		TCGA	LD	BRCA	TCGA-AR-A24R-01A	FOXK2	chr17	80561551	+	ARFGAP1	chr20	61912643	+
5CDS-intron	ENST00000265000	ENST00000504618		TCGA	LD	BRCA	TCGA-AR-A24R-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000265000	ENST00000296504		TCGA	LD	BRCA	TCGA-AR-A24R-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000512285	ENST00000504618		TCGA	LD	BRCA	TCGA-AR-A24R-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000512285	ENST00000296504		TCGA	LD	BRCA	TCGA-AR-A24R-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
intron-intron	ENST00000502407	ENST00000504618		TCGA	LD	BRCA	TCGA-AR-A24R-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
intron-intron	ENST00000502407	ENST00000296504		TCGA	LD	BRCA	TCGA-AR-A24R-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5UTR-3CDS	ENST00000315596	ENST00000372899		TCGA	LD	BRCA	TCGA-AR-A24R-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-3CDS	ENST00000315596	ENST00000372901		TCGA	LD	BRCA	TCGA-AR-A24R-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-3UTR	ENST00000315596	ENST00000372883		TCGA	LD	BRCA	TCGA-AR-A24R-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-intron	ENST00000315596	ENST00000372903		TCGA	LD	BRCA	TCGA-AR-A24R-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5CDS-intron	ENST00000308127	ENST00000353903		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
5CDS-intron	ENST00000308127	ENST00000294288		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
intron-intron	ENST00000308298	ENST00000353903		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
intron-intron	ENST00000308298	ENST00000294288		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
5CDS-intron	ENST00000376757	ENST00000353903		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
5CDS-intron	ENST00000376757	ENST00000294288		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
5CDS-intron	ENST00000532181	ENST00000353903		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
5CDS-intron	ENST00000532181	ENST00000294288		TCGA	LD	BRCA	TCGA-AR-A24R-01A	SSH3	chr11	67077014	+	CABP2	chr11	67291910	-
In-frame	ENST00000262291	ENST00000269127		TCGA	LD	BRCA	TCGA-AR-A24R-01A	VMP1	chr17	57851246	+	C17orf64	chr17	58503144	+
In-frame	ENST00000537567	ENST00000269127		TCGA	LD	BRCA	TCGA-AR-A24R-01A	VMP1	chr17	57851246	+	C17orf64	chr17	58503144	+
In-frame	ENST00000539763	ENST00000269127		TCGA	LD	BRCA	TCGA-AR-A24R-01A	VMP1	chr17	57851246	+	C17orf64	chr17	58503144	+
In-frame	ENST00000536180	ENST00000269127		TCGA	LD	BRCA	TCGA-AR-A24R-01A	VMP1	chr17	57851246	+	C17orf64	chr17	58503144	+
In-frame	ENST00000545362	ENST00000269127		TCGA	LD	BRCA	TCGA-AR-A24R-01A	VMP1	chr17	57851246	+	C17orf64	chr17	58503144	+
intron-3CDS	ENST00000588617	ENST00000269127		TCGA	LD	BRCA	TCGA-AR-A24R-01A	VMP1	chr17	57851246	+	C17orf64	chr17	58503144	+
5CDS-3UTR	ENST00000379719	ENST00000530490		TCGA	LD	BRCA	TCGA-AR-A24S-01A	IPO7	chr11	9406394	+	OR7E14P	chr11	17073579	+
intron-3UTR	ENST00000533680	ENST00000530490		TCGA	LD	BRCA	TCGA-AR-A24S-01A	IPO7	chr11	9406394	+	OR7E14P	chr11	17073579	+
Frame-shit	ENST00000358026	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000358026	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000344626	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000344626	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000429416	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000429416	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000541122	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000541122	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000589677	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000589677	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000444061	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000444061	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000590574	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000590574	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000413806	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000413806	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000450717	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
5CDS-intron	ENST00000450717	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
intron-3CDS	ENST00000538456	ENST00000343625		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
intron-intron	ENST00000538456	ENST00000608577		TCGA	LD	BRCA	TCGA-AR-A24S-01A	SMARCA4	chr19	11123788	+	RASAL3	chr19	15572107	-
Frame-shit	ENST00000371146	ENST00000237247		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
Frame-shit	ENST00000371146	ENST00000371039		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
Frame-shit	ENST00000371146	ENST00000371035		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-3UTR	ENST00000371146	ENST00000468286		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-3UTR	ENST00000371146	ENST00000371036		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-3UTR	ENST00000371146	ENST00000371037		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-intron	ENST00000371146	ENST00000435165		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
Frame-shit	ENST00000339950	ENST00000237247		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
Frame-shit	ENST00000339950	ENST00000371039		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
Frame-shit	ENST00000339950	ENST00000371035		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-3UTR	ENST00000339950	ENST00000468286		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-3UTR	ENST00000339950	ENST00000371036		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-3UTR	ENST00000339950	ENST00000371037		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
5CDS-intron	ENST00000339950	ENST00000435165		TCGA	LD	BRCA	TCGA-AR-A24S-01A	USP1	chr1	62914337	+	SGIP1	chr1	67091530	+
Frame-shit	ENST00000600692	ENST00000389282		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000600692	ENST00000599910		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000600692	ENST00000263381		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000600692	ENST00000599686		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000600692	ENST00000545156		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000599296	ENST00000389282		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000599296	ENST00000599910		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000599296	ENST00000263381		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000599296	ENST00000599686		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000599296	ENST00000545156		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000594425	ENST00000389282		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000594425	ENST00000599910		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000594425	ENST00000263381		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000594425	ENST00000599686		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000594425	ENST00000545156		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000311048	ENST00000389282		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
Frame-shit	ENST00000311048	ENST00000599910		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000311048	ENST00000263381		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000311048	ENST00000599686		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
5CDS-intron	ENST00000311048	ENST00000545156		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
intron-3CDS	ENST00000594821	ENST00000389282		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
intron-3CDS	ENST00000594821	ENST00000599910		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
intron-intron	ENST00000594821	ENST00000263381		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
intron-intron	ENST00000594821	ENST00000599686		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
intron-intron	ENST00000594821	ENST00000545156		TCGA	LD	BRCA	TCGA-AR-A24S-01A	ZNF431	chr19	21326446	+	WIZ	chr19	15540900	-
In-frame	ENST00000448504	ENST00000293328		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ARSG	chr17	66397591	+	STAT5B	chr17	40354826	-
In-frame	ENST00000452479	ENST00000293328		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ARSG	chr17	66397591	+	STAT5B	chr17	40354826	-
3UTR-3CDS	ENST00000582154	ENST00000293328		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ARSG	chr17	66397591	+	STAT5B	chr17	40354826	-
In-frame	ENST00000360761	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000360761	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000360761	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000360761	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000360761	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000360761	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000354983	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000354983	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000354983	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000354983	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000354983	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000354983	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000352832	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000352832	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000352832	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000352832	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000352832	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000352832	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000442258	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000442258	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000442258	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000442258	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000442258	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000442258	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000416767	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000416767	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000416767	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000416767	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000416767	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000416767	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000502264	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000502264	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000502264	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000502264	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000502264	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000502264	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515411	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515411	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515411	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515411	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515411	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000515411	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510115	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510115	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510115	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510115	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510115	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000510115	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000503485	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000503485	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000503485	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000503485	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000503485	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000503485	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515165	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515165	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515165	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515165	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515165	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000515165	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507510	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507510	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507510	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507510	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507510	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000507510	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514181	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514181	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514181	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514181	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514181	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000514181	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515765	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515765	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515765	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515765	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000515765	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000515765	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507336	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507336	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507336	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507336	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507336	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000507336	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514079	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514079	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514079	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514079	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514079	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000514079	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507896	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507896	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507896	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507896	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507896	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000507896	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000512389	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000512389	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000512389	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000512389	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000512389	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000512389	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513689	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513689	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513689	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513689	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513689	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000513689	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513964	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513964	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513964	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513964	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000513964	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000513964	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000505165	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000505165	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000505165	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000505165	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000505165	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000505165	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507609	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507609	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507609	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507609	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000507609	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000507609	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514717	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514717	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514717	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514717	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000514717	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000514717	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510366	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510366	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510366	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510366	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000510366	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000510366	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000429973	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000429973	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000429973	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000429973	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000429973	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000429973	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000359106	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000359106	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000359106	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000359106	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000359106	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000359106	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000358244	ENST00000394126		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000358244	ENST00000356271		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000358244	ENST00000394128		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000358244	ENST00000394127		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
In-frame	ENST00000358244	ENST00000501516		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-intron	ENST00000358244	ENST00000479829		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	MED24	chr17	38182584	-
5CDS-3UTR	ENST00000360761	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000360761	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000354983	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000354983	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000352832	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000352832	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000442258	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000442258	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000416767	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000416767	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000502264	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000502264	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000515411	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000515411	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000510115	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000510115	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000503485	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000503485	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000515165	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000515165	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507510	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507510	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000514181	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000514181	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000515765	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000515765	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507336	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507336	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000514079	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000514079	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507896	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507896	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000512389	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000512389	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000513689	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000513689	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000513964	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000513964	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000505165	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000505165	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507609	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000507609	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000514717	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000514717	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000510366	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000510366	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000429973	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000429973	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000359106	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000359106	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000358244	ENST00000422730		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
5CDS-3UTR	ENST00000358244	ENST00000432056		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CACNA1G	chr17	48655925	+	PRAC2	chr17	46801690	+
In-frame	ENST00000338252	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000338252	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000338252	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000338252	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000338252	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000338252	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000508830	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000508830	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000508830	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000508830	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000508830	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000508830	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000359176	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000359176	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000359176	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000359176	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000359176	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000359176	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000395812	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000395812	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000395812	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000395812	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000395812	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000395812	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000325674	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000325674	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000325674	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000325674	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000325674	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000325674	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000395813	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000395813	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000395813	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000395813	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000395813	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000395813	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000510756	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000510756	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000510756	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000510756	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000510756	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000510756	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000508608	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000508608	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000508608	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000508608	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000508608	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000508608	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000341926	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000341926	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000341926	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000341926	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000341926	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000341926	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000511049	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000511049	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000511049	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000511049	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000511049	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000511049	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000309190	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000309190	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000309190	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000309190	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000309190	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000309190	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000509903	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000509903	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000509903	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000509903	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000509903	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000509903	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000511782	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000511782	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000511782	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000511782	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000511782	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000511782	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000504465	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000504465	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
In-frame	ENST00000504465	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-intron	ENST00000504465	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000504465	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
5CDS-5UTR	ENST00000504465	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
3UTR-3CDS	ENST00000348386	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
3UTR-3CDS	ENST00000348386	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
3UTR-3CDS	ENST00000348386	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
3UTR-intron	ENST00000348386	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
3UTR-5UTR	ENST00000348386	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
3UTR-5UTR	ENST00000348386	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000508579	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000508579	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000508579	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-intron	ENST00000508579	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-5UTR	ENST00000508579	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-5UTR	ENST00000508579	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000515663	ENST00000515393		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000515663	ENST00000429576		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000515663	ENST00000312216		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-intron	ENST00000515663	ENST00000505208		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-5UTR	ENST00000515663	ENST00000514040		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
intron-5UTR	ENST00000515663	ENST00000505078		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CAST	chr5	96073651	+	MCTP1	chr5	94050591	-
Frame-shit	ENST00000430627	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000430627	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000430627	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000447079	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000447079	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000559545	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000559545	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A24U-01A	CDK12	chr17	37619370	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000437043	ENST00000283357		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
5UTR-intron	ENST00000437043	ENST00000506418		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
5UTR-3CDS	ENST00000379904	ENST00000283357		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
5UTR-intron	ENST00000379904	ENST00000506418		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
intron-3CDS	ENST00000510309	ENST00000283357		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
intron-intron	ENST00000510309	ENST00000506418		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
intron-3CDS	ENST00000515095	ENST00000283357		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
intron-intron	ENST00000515095	ENST00000506418		TCGA	LD	BRCA	TCGA-AR-A24U-01A	ERAP2	chr5	96212231	+	FAM81B	chr5	94772504	+
In-frame	ENST00000336915	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000336915	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000336915	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000336915	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000336915	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000336915	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000336915	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000336915	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
In-frame	ENST00000584924	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000584924	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000584924	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000584924	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000584924	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000584924	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000584924	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A24U-01A	SKAP1	chr17	46423267	-	IKZF3	chr17	37922746	-
5UTR-5UTR	ENST00000258991	ENST00000499247		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
5UTR-5UTR	ENST00000258991	ENST00000268957		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
5UTR-intron	ENST00000258991	ENST00000509385		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
intron-5UTR	ENST00000583097	ENST00000499247		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
intron-5UTR	ENST00000583097	ENST00000268957		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
intron-intron	ENST00000583097	ENST00000509385		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
5UTR-5UTR	ENST00000584379	ENST00000499247		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
5UTR-5UTR	ENST00000584379	ENST00000268957		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
5UTR-intron	ENST00000584379	ENST00000509385		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
intron-5UTR	ENST00000581812	ENST00000499247		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
intron-5UTR	ENST00000581812	ENST00000268957		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
intron-intron	ENST00000581812	ENST00000509385		TCGA	LD	BRCA	TCGA-AR-A24U-01A	TEX2	chr17	62340528	-	TOB1	chr17	48941524	-
3UTR-3CDS	ENST00000428783	ENST00000380473		TCGA	LD	BRCA	TCGA-AR-A24V-01A	EEF1DP3	chr13	32520318	+	TEX26	chr13	31540359	+
3UTR-intron	ENST00000428783	ENST00000530916		TCGA	LD	BRCA	TCGA-AR-A24V-01A	EEF1DP3	chr13	32520318	+	TEX26	chr13	31540359	+
In-frame	ENST00000298556	ENST00000443824		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
In-frame	ENST00000298556	ENST00000359276		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
In-frame	ENST00000298556	ENST00000380241		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
5CDS-intron	ENST00000298556	ENST00000483053		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
3UTR-3CDS	ENST00000462974	ENST00000443824		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
3UTR-3CDS	ENST00000462974	ENST00000359276		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
3UTR-3CDS	ENST00000462974	ENST00000380241		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
3UTR-intron	ENST00000462974	ENST00000483053		TCGA	LD	BRCA	TCGA-AR-A24W-01A	HPRT1	chrX	133609394	+	CTPS2	chrX	16657366	-
5UTR-3CDS	ENST00000315596	ENST00000372899		TCGA	LD	BRCA	TCGA-AR-A24X-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-3CDS	ENST00000315596	ENST00000372901		TCGA	LD	BRCA	TCGA-AR-A24X-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-3UTR	ENST00000315596	ENST00000372883		TCGA	LD	BRCA	TCGA-AR-A24X-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5UTR-intron	ENST00000315596	ENST00000372903		TCGA	LD	BRCA	TCGA-AR-A24X-01A	PDS5B	chr13	33160730	+	UBR2	chr6	42658770	+
5CDS-5UTR	ENST00000392859	ENST00000369293		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000392859	ENST00000358812		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000392859	ENST00000474553		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5UTR-5UTR	ENST00000359415	ENST00000369293		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5UTR-5UTR	ENST00000359415	ENST00000358812		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5UTR-intron	ENST00000359415	ENST00000474553		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000534182	ENST00000369293		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000534182	ENST00000358812		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000534182	ENST00000474553		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000264028	ENST00000369293		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000264028	ENST00000358812		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000264028	ENST00000474553		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ARCN1	chr11	118443265	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000264033	ENST00000525428		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CBL	chr11	119149423	+	CLNS1A	chr11	77241059	-
5CDS-intron	ENST00000264033	ENST00000263309		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CBL	chr11	119149423	+	CLNS1A	chr11	77241059	-
5CDS-intron	ENST00000264033	ENST00000525064		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CBL	chr11	119149423	+	CLNS1A	chr11	77241059	-
5CDS-intron	ENST00000264033	ENST00000532069		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CBL	chr11	119149423	+	CLNS1A	chr11	77241059	-
5CDS-intron	ENST00000264033	ENST00000528364		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CBL	chr11	119149423	+	CLNS1A	chr11	77241059	-
5CDS-intron	ENST00000264033	ENST00000533957		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CBL	chr11	119149423	+	CLNS1A	chr11	77241059	-
5UTR-3CDS	ENST00000366955	ENST00000258341		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	LAMC1	chr1	183105521	+
5UTR-intron	ENST00000366955	ENST00000466964		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	LAMC1	chr1	183105521	+
intron-3CDS	ENST00000467765	ENST00000258341		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	LAMC1	chr1	183105521	+
intron-intron	ENST00000467765	ENST00000466964		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	CENPF	chr1	214776664	+	LAMC1	chr1	183105521	+
Frame-shit	ENST00000367160	ENST00000367302		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367160	ENST00000367296		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367160	ENST00000295624		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367160	ENST00000367297		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367160	ENST00000367300		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367160	ENST00000367295		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
5CDS-intron	ENST00000367160	ENST00000469130		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367161	ENST00000367302		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367161	ENST00000367296		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367161	ENST00000295624		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367161	ENST00000367297		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367161	ENST00000367300		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367161	ENST00000367295		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
5CDS-intron	ENST00000367161	ENST00000469130		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367162	ENST00000367302		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367162	ENST00000367296		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367162	ENST00000295624		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367162	ENST00000367297		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367162	ENST00000367300		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
Frame-shit	ENST00000367162	ENST00000367295		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
5CDS-intron	ENST00000367162	ENST00000469130		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	DSTYK	chr1	205180399	-	NAV1	chr1	201749549	+
5UTR-intron	ENST00000064778	ENST00000446507		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000064778	ENST00000441198		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000064778	ENST00000304672		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000450446	ENST00000446507		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000450446	ENST00000441198		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000450446	ENST00000304672		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000356467	ENST00000446507		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000356467	ENST00000441198		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
5UTR-intron	ENST00000356467	ENST00000304672		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	FAM168A	chr11	73308968	-	PTCRA	chr6	42890883	+
In-frame	ENST00000368917	ENST00000423932		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	GABPB2	chr1	151070478	+	OR10J1	chr1	159409566	+
In-frame	ENST00000368918	ENST00000423932		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	GABPB2	chr1	151070478	+	OR10J1	chr1	159409566	+
In-frame	ENST00000368916	ENST00000423932		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	GABPB2	chr1	151070478	+	OR10J1	chr1	159409566	+
3UTR-3CDS	ENST00000467551	ENST00000423932		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	GABPB2	chr1	151070478	+	OR10J1	chr1	159409566	+
In-frame	ENST00000371208	ENST00000310653		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
In-frame	ENST00000371208	ENST00000336083		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
In-frame	ENST00000371208	ENST00000536566		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
In-frame	ENST00000371208	ENST00000541588		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
3UTR-3CDS	ENST00000465876	ENST00000310653		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
3UTR-3CDS	ENST00000465876	ENST00000336083		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
3UTR-3CDS	ENST00000465876	ENST00000536566		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
3UTR-3CDS	ENST00000465876	ENST00000541588		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
intron-3CDS	ENST00000395561	ENST00000310653		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
intron-3CDS	ENST00000395561	ENST00000336083		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
intron-3CDS	ENST00000395561	ENST00000536566		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
intron-3CDS	ENST00000395561	ENST00000541588		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	HOOK1	chr1	60280852	+	RAB6A	chr11	73390765	-
5CDS-intron	ENST00000258341	ENST00000343846		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000366878		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000484758		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000494793		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000478605		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000454695		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000344029		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
5CDS-intron	ENST00000258341	ENST00000366877		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000343846		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000366878		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000484758		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000494793		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000478605		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000454695		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000344029		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
intron-intron	ENST00000466964	ENST00000366877		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	LAMC1	chr1	183105585	+	SUSD4	chr1	223454425	-
Frame-shit	ENST00000244711	ENST00000370888		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	MEA1	chr6	42980664	-	LRRC1	chr6	53761296	+
5CDS-intron	ENST00000244711	ENST00000370882		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	MEA1	chr6	42980664	-	LRRC1	chr6	53761296	+
Frame-shit	ENST00000392844	ENST00000491071		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000348717		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000518273		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000522291		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000517960		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000521978		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000520567		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000264839		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000401910		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000523963		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000425662		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000517827		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000392844	ENST00000538414		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-3UTR	ENST00000392844	ENST00000431478		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-5UTR	ENST00000392844	ENST00000414192		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000491071		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000348717		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000518273		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000522291		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000517960		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000521978		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000520567		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000264839		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000401910		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000523963		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000425662		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000517827		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000257789	ENST00000538414		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-3UTR	ENST00000257789	ENST00000431478		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-5UTR	ENST00000257789	ENST00000414192		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000491071		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000348717		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000518273		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000522291		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000517960		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000521978		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000520567		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000264839		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000401910		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000523963		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000425662		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000517827		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000546266	ENST00000538414		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-3UTR	ENST00000546266	ENST00000431478		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-5UTR	ENST00000546266	ENST00000414192		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000491071		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000348717		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000518273		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000522291		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000517960		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000521978		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000520567		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000264839		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000401910		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000523963		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000425662		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000517827		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000417380	ENST00000538414		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-3UTR	ENST00000417380	ENST00000431478		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
5CDS-5UTR	ENST00000417380	ENST00000414192		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000491071		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000348717		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000518273		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000522291		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000517960		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000521978		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000520567		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000264839		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000401910		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000523963		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000425662		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000517827		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3CDS	ENST00000478028	ENST00000538414		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-3UTR	ENST00000478028	ENST00000431478		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
intron-5UTR	ENST00000478028	ENST00000414192		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	ORC3	chr6	88321966	+	RIMS1	chr6	73100300	+
Frame-shit	ENST00000337959	ENST00000341191		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000337959	ENST00000545749		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000337959	ENST00000440527		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
Frame-shit	ENST00000263246	ENST00000341191		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000263246	ENST00000545749		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000263246	ENST00000440527		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
Frame-shit	ENST00000407585	ENST00000341191		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000407585	ENST00000545749		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000407585	ENST00000440527		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
Frame-shit	ENST00000403744	ENST00000341191		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000403744	ENST00000545749		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000403744	ENST00000440527		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
Frame-shit	ENST00000402229	ENST00000341191		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000402229	ENST00000545749		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000402229	ENST00000440527		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PACSIN2	chr22	43308027	-	ZNF823	chr19	11836142	-
5CDS-5UTR	ENST00000329654	ENST00000319928		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000329654	ENST00000271139		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000329654	ENST00000371940		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000329654	ENST00000477318		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000371049	ENST00000319928		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000371049	ENST00000271139		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000371049	ENST00000371940		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000371049	ENST00000477318		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423207	ENST00000319928		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423207	ENST00000271139		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423207	ENST00000371940		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423207	ENST00000477318		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
3UTR-5UTR	ENST00000371048	ENST00000319928		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
3UTR-5UTR	ENST00000371048	ENST00000271139		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
3UTR-5UTR	ENST00000371048	ENST00000371940		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
3UTR-5UTR	ENST00000371048	ENST00000477318		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000371045	ENST00000319928		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000371045	ENST00000271139		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000371045	ENST00000371940		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000371045	ENST00000477318		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000480109	ENST00000319928		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000480109	ENST00000271139		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000480109	ENST00000371940		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000480109	ENST00000477318		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PDE4B	chr1	66731770	+	MOB3C	chr1	47079043	-
In-frame	ENST00000367591	ENST00000367584		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PEX3	chr6	143789302	+	PHACTR2	chr6	144086398	+
In-frame	ENST00000367591	ENST00000427704		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PEX3	chr6	143789302	+	PHACTR2	chr6	144086398	+
In-frame	ENST00000367591	ENST00000305766		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PEX3	chr6	143789302	+	PHACTR2	chr6	144086398	+
In-frame	ENST00000367591	ENST00000440869		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PEX3	chr6	143789302	+	PHACTR2	chr6	144086398	+
In-frame	ENST00000367591	ENST00000367582		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PEX3	chr6	143789302	+	PHACTR2	chr6	144086398	+
5CDS-intron	ENST00000367591	ENST00000397980		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PEX3	chr6	143789302	+	PHACTR2	chr6	144086398	+
5CDS-5UTR	ENST00000367033	ENST00000544095		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
5CDS-5UTR	ENST00000367033	ENST00000323825		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
5CDS-5UTR	ENST00000367033	ENST00000366899		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
5CDS-5UTR	ENST00000367033	ENST00000468085		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
intron-5UTR	ENST00000483048	ENST00000544095		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
intron-5UTR	ENST00000483048	ENST00000323825		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
intron-5UTR	ENST00000483048	ENST00000366899		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
intron-5UTR	ENST00000483048	ENST00000468085		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	PLXNA2	chr1	208383625	-	DUSP10	chr1	221879808	-
In-frame	ENST00000369536	ENST00000316999		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
In-frame	ENST00000369536	ENST00000370452		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
In-frame	ENST00000369536	ENST00000370455		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
5CDS-intron	ENST00000369536	ENST00000422334		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000497828	ENST00000316999		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000497828	ENST00000370452		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000497828	ENST00000370455		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
intron-intron	ENST00000497828	ENST00000422334		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	RARS2	chr6	88299640	-	SMAP1	chr6	71508360	+
In-frame	ENST00000449833	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000449833	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000409161	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000409161	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000423696	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000423696	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000338508	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000338508	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000409530	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000409530	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000449116	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000449116	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000357171	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
In-frame	ENST00000357171	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
intron-3CDS	ENST00000468619	ENST00000275036		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
intron-3CDS	ENST00000468619	ENST00000344726		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SHANK2	chr11	70505933	-	HMGN3	chr6	79924739	-
Frame-shit	ENST00000370859	ENST00000370758		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
Frame-shit	ENST00000370859	ENST00000370756		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
Frame-shit	ENST00000370859	ENST00000370757		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
Frame-shit	ENST00000370855	ENST00000370758		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
Frame-shit	ENST00000370855	ENST00000370756		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
Frame-shit	ENST00000370855	ENST00000370757		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
In-frame	ENST00000535611	ENST00000370758		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
Frame-shit	ENST00000535611	ENST00000370756		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
In-frame	ENST00000535611	ENST00000370757		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
intron-3CDS	ENST00000469525	ENST00000370758		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
intron-3CDS	ENST00000469525	ENST00000370756		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
intron-3CDS	ENST00000469525	ENST00000370757		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SLC44A5	chr1	75677153	-	PTGFR	chr1	79002091	+
intron-3CDS	ENST00000448662	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000448662	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000448662	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-3CDS	ENST00000431808	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-3CDS	ENST00000431808	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-intron	ENST00000431808	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000284776	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000284776	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000284776	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000437304	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000437304	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000437304	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
Frame-shit	ENST00000319471	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
Frame-shit	ENST00000319471	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000319471	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
Frame-shit	ENST00000449407	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
Frame-shit	ENST00000449407	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000449407	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
Frame-shit	ENST00000355634	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
Frame-shit	ENST00000355634	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5CDS-intron	ENST00000355634	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000393528	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000393528	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000393528	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000418609	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000418609	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000418609	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000498125	ENST00000376059		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-3CDS	ENST00000498125	ENST00000376049		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000414149		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000419376		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000425748		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000416422		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000413349		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000415830		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000383474		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000488491		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000383473		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000440907		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000549432		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
intron-intron	ENST00000498125	ENST00000424944		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	SORBS2	chr4	186605908	-	AIF1	chr6	31584121	+
5UTR-5UTR	ENST00000425528	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000425528	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-5UTR	ENST00000425528	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000425528	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000425528	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000425528	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000425528	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000425528	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-5UTR	ENST00000441499	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000441499	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-5UTR	ENST00000441499	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000441499	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000441499	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000441499	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000441499	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000441499	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000356861	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000356861	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000356861	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000356861	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000356861	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000356861	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000356861	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000356861	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000450764	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000450764	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000450764	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000450764	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000450764	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000450764	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000450764	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000450764	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000592287	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000592287	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000592287	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000592287	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000592287	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000592287	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000592287	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000592287	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-5UTR	ENST00000588216	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000588216	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-5UTR	ENST00000588216	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000588216	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000588216	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000588216	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000588216	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
5UTR-intron	ENST00000588216	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000589956	ENST00000485760		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000589956	ENST00000371236		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-5UTR	ENST00000589956	ENST00000371234		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000589956	ENST00000420954		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000589956	ENST00000439789		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000589956	ENST00000414851		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000589956	ENST00000371231		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
intron-intron	ENST00000589956	ENST00000371230		TCGA	LD	BRCA	TCGA-AR-A24Z-01A	TNPO2	chr19	12834063	-	DAB1	chr1	58349834	-
Frame-shit	ENST00000589222	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000589222	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000589222	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000589222	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000589222	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000589222	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000589222	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000589222	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000407086	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000407086	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000390652	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000390652	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000408905	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000408905	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588462	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000588462	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000585744	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000585744	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
Frame-shit	ENST00000588874	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000588874	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000259021		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000454930		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000509773		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000510819		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000424009		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000503935		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000585812	ENST00000435742		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
intron-3UTR	ENST00000585812	ENST00000513980		TCGA	LD	BRCA	TCGA-AR-A250-01A	BCAS3	chr17	59161925	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000556440	ENST00000468643		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000556440	ENST00000400577		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
5UTR-3UTR	ENST00000553412	ENST00000468643		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
5UTR-3UTR	ENST00000553412	ENST00000400577		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000581056	ENST00000468643		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000581056	ENST00000400577		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
intron-3UTR	ENST00000577476	ENST00000468643		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
intron-3UTR	ENST00000577476	ENST00000400577		TCGA	LD	BRCA	TCGA-AR-A250-01A	CEP95	chr17	62503234	+	RBM11	chr21	15593418	+
In-frame	ENST00000225964	ENST00000223357		TCGA	LD	BRCA	TCGA-AR-A250-01A	COL1A1	chr17	48273845	-	AEBP1	chr7	44151741	+
5CDS-intron	ENST00000225964	ENST00000454218		TCGA	LD	BRCA	TCGA-AR-A250-01A	COL1A1	chr17	48273845	-	AEBP1	chr7	44151741	+
5CDS-intron	ENST00000225964	ENST00000450684		TCGA	LD	BRCA	TCGA-AR-A250-01A	COL1A1	chr17	48273845	-	AEBP1	chr7	44151741	+
Frame-shit	ENST00000225792	ENST00000265707		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
Frame-shit	ENST00000225792	ENST00000379866		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-intron	ENST00000225792	ENST00000520772		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-5UTR	ENST00000225792	ENST00000541111		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-intron	ENST00000225792	ENST00000523755		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
Frame-shit	ENST00000450599	ENST00000265707		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
Frame-shit	ENST00000450599	ENST00000379866		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-intron	ENST00000450599	ENST00000520772		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-5UTR	ENST00000450599	ENST00000541111		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-intron	ENST00000450599	ENST00000523755		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
Frame-shit	ENST00000578804	ENST00000265707		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
Frame-shit	ENST00000578804	ENST00000379866		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-intron	ENST00000578804	ENST00000520772		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-5UTR	ENST00000578804	ENST00000541111		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
5CDS-intron	ENST00000578804	ENST00000523755		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
intron-3CDS	ENST00000580026	ENST00000265707		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
intron-3CDS	ENST00000580026	ENST00000379866		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
intron-intron	ENST00000580026	ENST00000520772		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
intron-5UTR	ENST00000580026	ENST00000541111		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
intron-intron	ENST00000580026	ENST00000523755		TCGA	LD	BRCA	TCGA-AR-A250-01A	DDX5	chr17	62498128	-	ADAM18	chr8	39495984	+
Frame-shit	ENST00000327671	ENST00000340149		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
Frame-shit	ENST00000327671	ENST00000361507		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5CDS-intron	ENST00000327671	ENST00000526030		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
In-frame	ENST00000518672	ENST00000340149		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
In-frame	ENST00000518672	ENST00000361507		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5CDS-intron	ENST00000518672	ENST00000526030		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
In-frame	ENST00000524021	ENST00000340149		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
In-frame	ENST00000524021	ENST00000361507		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5CDS-intron	ENST00000524021	ENST00000526030		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
Frame-shit	ENST00000335589	ENST00000340149		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
Frame-shit	ENST00000335589	ENST00000361507		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5CDS-intron	ENST00000335589	ENST00000526030		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5UTR-3CDS	ENST00000518076	ENST00000340149		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5UTR-3CDS	ENST00000518076	ENST00000361507		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5UTR-intron	ENST00000518076	ENST00000526030		TCGA	LD	BRCA	TCGA-AR-A250-01A	FUT10	chr8	33310734	-	GAB2	chr11	77961446	-
5CDS-5UTR	ENST00000382778	ENST00000361042		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000382778	ENST00000335327		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-3UTR	ENST00000382778	ENST00000496788		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000351808	ENST00000361042		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000351808	ENST00000335327		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-3UTR	ENST00000351808	ENST00000496788		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000319980	ENST00000361042		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000319980	ENST00000335327		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-3UTR	ENST00000319980	ENST00000496788		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000537103	ENST00000361042		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-5UTR	ENST00000537103	ENST00000335327		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
5CDS-3UTR	ENST00000537103	ENST00000496788		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
intron-5UTR	ENST00000461115	ENST00000361042		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
intron-5UTR	ENST00000461115	ENST00000335327		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
intron-3UTR	ENST00000461115	ENST00000496788		TCGA	LD	BRCA	TCGA-AR-A250-01A	IFT88	chr13	21157158	+	WASF3	chr13	27216398	+
Frame-shit	ENST00000346872	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346872	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346872	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346872	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346872	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000346872	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000346872	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000346872	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000394189	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000394189	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000394189	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000394189	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000394189	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000394189	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000394189	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000394189	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439167	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439167	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439167	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439167	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439167	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000439167	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000439167	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000439167	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000535189	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000535189	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000535189	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000535189	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000535189	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000535189	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000535189	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000535189	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377944	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377944	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377944	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377944	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377944	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000377944	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000377944	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000377944	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377945	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377945	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377945	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377945	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377945	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000377945	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000377945	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000377945	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377952	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377952	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377952	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377952	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000377952	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000377952	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000377952	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000377952	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377958	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377958	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377958	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377958	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000377958	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000377958	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000377958	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000377958	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000346243	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000346243	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000346243	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000346243	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000346243	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000346243	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000346243	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000346243	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000350532	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000350532	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000350532	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000350532	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000350532	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000350532	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000350532	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
intron-intron	ENST00000350532	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000351680	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000351680	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000351680	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000351680	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000351680	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000351680	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000351680	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000351680	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000467757	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000467757	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000467757	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000467757	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000467757	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000467757	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000467757	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000467757	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439016	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439016	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439016	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439016	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000439016	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000439016	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000439016	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000439016	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000583368	ENST00000589222		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000583368	ENST00000407086		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000583368	ENST00000390652		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000583368	ENST00000408905		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
Frame-shit	ENST00000583368	ENST00000588462		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000583368	ENST00000585744		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000583368	ENST00000588874		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000583368	ENST00000585812		TCGA	LD	BRCA	TCGA-AR-A250-01A	IKZF3	chr17	37933904	-	BCAS3	chr17	58945937	+
In-frame	ENST00000007708	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
In-frame	ENST00000007708	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
5CDS-intron	ENST00000007708	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
In-frame	ENST00000503176	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
In-frame	ENST00000503176	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
5CDS-intron	ENST00000503176	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
intron-3CDS	ENST00000511026	ENST00000430627		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
intron-3CDS	ENST00000511026	ENST00000447079		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
intron-intron	ENST00000511026	ENST00000559545		TCGA	LD	BRCA	TCGA-AR-A250-01A	PDK2	chr17	48182806	+	CDK12	chr17	37627132	+
5CDS-5UTR	ENST00000580974	ENST00000586178		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000580974	ENST00000415868		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000580974	ENST00000376381		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000580974	ENST00000593259		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000299954	ENST00000586178		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000299954	ENST00000415868		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000299954	ENST00000376381		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000299954	ENST00000593259		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000335257	ENST00000586178		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000335257	ENST00000415868		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000335257	ENST00000376381		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000335257	ENST00000593259		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000581322	ENST00000586178		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000581322	ENST00000415868		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000581322	ENST00000376381		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000581322	ENST00000593259		TCGA	LD	BRCA	TCGA-AR-A250-01A	PITPNC1	chr17	65574373	+	MBTD1	chr17	49302570	-
intron-3CDS	ENST00000325874	ENST00000583539		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000325874	ENST00000337432		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000325874	ENST00000487921		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000325874	ENST00000421782		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000581280	ENST00000583539		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3CDS	ENST00000581280	ENST00000337432		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000581280	ENST00000487921		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
intron-3UTR	ENST00000581280	ENST00000421782		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000394744	ENST00000583539		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000394744	ENST00000337432		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000394744	ENST00000487921		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
5CDS-3UTR	ENST00000394744	ENST00000421782		TCGA	LD	BRCA	TCGA-AR-A250-01A	RAB11FIP4	chr17	29815290	+	RAD51C	chr17	56772292	+
Frame-shit	ENST00000262435	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000262435	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000578200	ENST00000346872		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000394189		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000439167		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000535189		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000377944		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000377945		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000377952		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000377958		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000346243		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000350532		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000351680		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000467757		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000439016		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000578200	ENST00000583368		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	IKZF3	chr17	37949186	-
In-frame	ENST00000262435	ENST00000172229		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	NGFR	chr17	47579425	+
5CDS-5UTR	ENST00000262435	ENST00000504201		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	NGFR	chr17	47579425	+
intron-3CDS	ENST00000578200	ENST00000172229		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	NGFR	chr17	47579425	+
intron-5UTR	ENST00000578200	ENST00000504201		TCGA	LD	BRCA	TCGA-AR-A250-01A	SMURF2	chr17	62657947	-	NGFR	chr17	47579425	+
5CDS-intron	ENST00000314616	ENST00000346128		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000314616	ENST00000400011		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000314616	ENST00000356107		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000314616	ENST00000545208		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000314616	ENST00000495972		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000347486	ENST00000346128		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000347486	ENST00000400011		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000347486	ENST00000356107		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000347486	ENST00000545208		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
5CDS-intron	ENST00000347486	ENST00000495972		TCGA	LD	BRCA	TCGA-AR-A250-01A	SUPT6H	chr17	27013807	+	TJP1	chr15	30248567	-
Frame-shit	ENST00000380680	ENST00000380958		TCGA	LD	BRCA	TCGA-AR-A250-01A	UBL3	chr13	30423649	-	PAN3	chr13	28748409	+
5CDS-5UTR	ENST00000380680	ENST00000399613		TCGA	LD	BRCA	TCGA-AR-A250-01A	UBL3	chr13	30423649	-	PAN3	chr13	28748409	+
5CDS-intron	ENST00000380680	ENST00000282391		TCGA	LD	BRCA	TCGA-AR-A250-01A	UBL3	chr13	30423649	-	PAN3	chr13	28748409	+
5CDS-intron	ENST00000380680	ENST00000483842		TCGA	LD	BRCA	TCGA-AR-A250-01A	UBL3	chr13	30423649	-	PAN3	chr13	28748409	+
Frame-shit	ENST00000228741	ENST00000266736		TCGA	LD	BRCA	TCGA-AR-A251-01A	ELK3	chr12	96617551	+	AMDHD1	chr12	96346495	+
Frame-shit	ENST00000552142	ENST00000266736		TCGA	LD	BRCA	TCGA-AR-A251-01A	ELK3	chr12	96617551	+	AMDHD1	chr12	96346495	+
intron-3CDS	ENST00000549529	ENST00000266736		TCGA	LD	BRCA	TCGA-AR-A251-01A	ELK3	chr12	96617551	+	AMDHD1	chr12	96346495	+
5CDS-5UTR	ENST00000370256	ENST00000373083		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000370256	ENST00000373089		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000370256	ENST00000373086		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000260506	ENST00000373083		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000260506	ENST00000373089		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000260506	ENST00000373086		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000271234	ENST00000373083		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000271234	ENST00000373089		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000271234	ENST00000373086		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000604705	ENST00000373083		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000604705	ENST00000373089		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000604705	ENST00000373086		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000370253	ENST00000373083		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000370253	ENST00000373089		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000370253	ENST00000373086		TCGA	LD	BRCA	TCGA-AR-A251-01A	FNBP1L	chr1	93913862	+	NCR2	chr6	41303569	+
In-frame	ENST00000360614	ENST00000252542		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
5CDS-5UTR	ENST00000360614	ENST00000591310		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
Frame-shit	ENST00000585374	ENST00000252542		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
5CDS-5UTR	ENST00000585374	ENST00000591310		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
In-frame	ENST00000593119	ENST00000252542		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
5CDS-5UTR	ENST00000593119	ENST00000591310		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
In-frame	ENST00000540670	ENST00000252542		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
5CDS-5UTR	ENST00000540670	ENST00000591310		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
In-frame	ENST00000590729	ENST00000252542		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
5CDS-5UTR	ENST00000590729	ENST00000591310		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
intron-3CDS	ENST00000590511	ENST00000252542		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
intron-5UTR	ENST00000590511	ENST00000591310		TCGA	LD	BRCA	TCGA-AR-A251-01A	LONP1	chr19	5705783	-	SAFB2	chr19	5600271	-
Frame-shit	ENST00000366919	ENST00000340366		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000366919	ENST00000297267		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
5CDS-intron	ENST00000366919	ENST00000480856		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000392142	ENST00000340366		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000392142	ENST00000297267		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
5CDS-intron	ENST00000392142	ENST00000480856		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000348824	ENST00000340366		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000348824	ENST00000297267		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
5CDS-intron	ENST00000348824	ENST00000480856		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000366920	ENST00000340366		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
Frame-shit	ENST00000366920	ENST00000297267		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
5CDS-intron	ENST00000366920	ENST00000480856		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
intron-3CDS	ENST00000446500	ENST00000340366		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
intron-3CDS	ENST00000446500	ENST00000297267		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
intron-intron	ENST00000446500	ENST00000480856		TCGA	LD	BRCA	TCGA-AR-A251-01A	MAP3K4	chr6	161471011	+	FNDC1	chr6	159618463	+
5CDS-5UTR	ENST00000360655	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000360655	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000396085	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000396085	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000349880	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000349880	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000396087	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000396087	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000527559	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000527559	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000540292	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000540292	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000533917	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000533917	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000311043	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000311043	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
intron-5UTR	ENST00000534229	ENST00000298838		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
intron-5UTR	ENST00000534229	ENST00000539589		TCGA	LD	BRCA	TCGA-AR-A251-01A	NAV2	chr11	20104725	+	PACSIN3	chr11	47204620	-
intron-5UTR	ENST00000421306	ENST00000504880		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000421306	ENST00000396865		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000421306	ENST00000539768		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000421306	ENST00000318672		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000421306	ENST00000515629		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000421306	ENST00000416547		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000421306	ENST00000512595		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-5UTR	ENST00000262483	ENST00000504880		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-intron	ENST00000262483	ENST00000396865		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-intron	ENST00000262483	ENST00000539768		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-intron	ENST00000262483	ENST00000318672		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-intron	ENST00000262483	ENST00000515629		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-intron	ENST00000262483	ENST00000416547		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
5CDS-intron	ENST00000262483	ENST00000512595		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-5UTR	ENST00000576664	ENST00000504880		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000576664	ENST00000396865		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000576664	ENST00000539768		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000576664	ENST00000318672		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000576664	ENST00000515629		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000576664	ENST00000416547		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
intron-intron	ENST00000576664	ENST00000512595		TCGA	LD	BRCA	TCGA-AR-A251-01A	PITPNM3	chr17	6428676	-	SLC38A9	chr5	54993040	-
Frame-shit	ENST00000446526	ENST00000225276		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRPSAP1	chr17	74344610	-	ST6GALNAC2	chr17	74574898	-
5CDS-5UTR	ENST00000446526	ENST00000586520		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRPSAP1	chr17	74344610	-	ST6GALNAC2	chr17	74574898	-
5UTR-3CDS	ENST00000324684	ENST00000225276		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRPSAP1	chr17	74344610	-	ST6GALNAC2	chr17	74574898	-
5UTR-5UTR	ENST00000324684	ENST00000586520		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRPSAP1	chr17	74344610	-	ST6GALNAC2	chr17	74574898	-
intron-3CDS	ENST00000588364	ENST00000225276		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRPSAP1	chr17	74344610	-	ST6GALNAC2	chr17	74574898	-
intron-5UTR	ENST00000588364	ENST00000586520		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRPSAP1	chr17	74344610	-	ST6GALNAC2	chr17	74574898	-
intron-3CDS	ENST00000466266	ENST00000286548		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
intron-5UTR	ENST00000466266	ENST00000397476		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
5UTR-3CDS	ENST00000428286	ENST00000286548		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
5UTR-5UTR	ENST00000428286	ENST00000397476		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
Frame-shit	ENST00000376718	ENST00000286548		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
5CDS-5UTR	ENST00000376718	ENST00000397476		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
intron-3CDS	ENST00000443509	ENST00000286548		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
intron-5UTR	ENST00000443509	ENST00000397476		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
intron-3CDS	ENST00000223609	ENST00000286548		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
intron-5UTR	ENST00000223609	ENST00000397476		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
Frame-shit	ENST00000376713	ENST00000286548		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
5CDS-5UTR	ENST00000376713	ENST00000397476		TCGA	LD	BRCA	TCGA-AR-A251-01A	PRUNE2	chr9	79438548	-	GNAQ	chr9	80412564	-
5UTR-3CDS	ENST00000383202	ENST00000393295		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000383202	ENST00000471497		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000383202	ENST00000273541		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000383202	ENST00000393292		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-3CDS	ENST00000236698	ENST00000393295		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000236698	ENST00000471497		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000236698	ENST00000273541		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000236698	ENST00000393292		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-3CDS	ENST00000434713	ENST00000393295		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000434713	ENST00000471497		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000434713	ENST00000273541		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000434713	ENST00000393292		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-3CDS	ENST00000480733	ENST00000393295		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000480733	ENST00000471497		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000480733	ENST00000273541		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
5UTR-5UTR	ENST00000480733	ENST00000393292		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
intron-3CDS	ENST00000536929	ENST00000393295		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
intron-5UTR	ENST00000536929	ENST00000471497		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
intron-5UTR	ENST00000536929	ENST00000273541		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
intron-5UTR	ENST00000536929	ENST00000393292		TCGA	LD	BRCA	TCGA-AR-A251-01A	STAG1	chr3	136471037	-	ISY1	chr3	128859328	-
intron-5UTR	ENST00000524394	ENST00000414820		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
intron-5UTR	ENST00000524394	ENST00000272610		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
intron-5UTR	ENST00000524394	ENST00000440566		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
intron-intron	ENST00000524394	ENST00000468548		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000292562	ENST00000414820		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000292562	ENST00000272610		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000292562	ENST00000440566		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
5CDS-intron	ENST00000292562	ENST00000468548		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF251	chr8	145979068	-	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000370440	ENST00000009041		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000370440	ENST00000544203		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000370440	ENST00000434197		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000370440	ENST00000396013		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000347275	ENST00000009041		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000347275	ENST00000544203		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000347275	ENST00000434197		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000347275	ENST00000396013		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000337393	ENST00000009041		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000337393	ENST00000544203		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000337393	ENST00000434197		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000337393	ENST00000396013		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000361321	ENST00000009041		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000361321	ENST00000544203		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000361321	ENST00000434197		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5CDS-5UTR	ENST00000361321	ENST00000396013		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5UTR-5UTR	ENST00000467231	ENST00000009041		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5UTR-5UTR	ENST00000467231	ENST00000544203		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5UTR-5UTR	ENST00000467231	ENST00000434197		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
5UTR-5UTR	ENST00000467231	ENST00000396013		TCGA	LD	BRCA	TCGA-AR-A251-01A	ZNF644	chr1	91447867	-	STARD3NL	chr7	38247048	+
In-frame	ENST00000023939	ENST00000359568		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
5CDS-3UTR	ENST00000023939	ENST00000480896		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
In-frame	ENST00000395881	ENST00000359568		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
5CDS-3UTR	ENST00000395881	ENST00000480896		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
In-frame	ENST00000357348	ENST00000359568		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
5CDS-3UTR	ENST00000357348	ENST00000480896		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
intron-3CDS	ENST00000484084	ENST00000359568		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
intron-3UTR	ENST00000484084	ENST00000480896		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
intron-3CDS	ENST00000435342	ENST00000359568		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
intron-3UTR	ENST00000435342	ENST00000480896		TCGA	LD	BRCA	TCGA-AR-A252-01A	RTFDC1	chr20	55049827	+	PCNT	chr21	47817928	+
Frame-shit	ENST00000209728	ENST00000398532		TCGA	LD	BRCA	TCGA-AR-A254-01A	CDC6	chr17	38450308	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000209728	ENST00000577454		TCGA	LD	BRCA	TCGA-AR-A254-01A	CDC6	chr17	38450308	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000209728	ENST00000578648		TCGA	LD	BRCA	TCGA-AR-A254-01A	CDC6	chr17	38450308	+	MSL1	chr17	38282436	+
5CDS-5UTR	ENST00000209728	ENST00000579565		TCGA	LD	BRCA	TCGA-AR-A254-01A	CDC6	chr17	38450308	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000242505	ENST00000609104		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
Frame-shit	ENST00000242505	ENST00000277575		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
Frame-shit	ENST00000242505	ENST00000379237		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
5CDS-intron	ENST00000242505	ENST00000443016		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
5CDS-intron	ENST00000242505	ENST00000609853		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000607940	ENST00000609104		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000607940	ENST00000277575		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
intron-3CDS	ENST00000607940	ENST00000379237		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
intron-intron	ENST00000607940	ENST00000443016		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
intron-intron	ENST00000607940	ENST00000609853		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM149B1	chr10	74968544	+	USP6NL	chr10	11569566	-
5UTR-intron	ENST00000358293	ENST00000535781		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM217B	chr20	58513167	+	PRPF6	chr20	62657292	+
intron-intron	ENST00000360816	ENST00000535781		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM217B	chr20	58513167	+	PRPF6	chr20	62657292	+
intron-intron	ENST00000469084	ENST00000535781		TCGA	LD	BRCA	TCGA-AR-A254-01A	FAM217B	chr20	58513167	+	PRPF6	chr20	62657292	+
intron-3CDS	ENST00000583610	ENST00000256646		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000583610	ENST00000602566		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000583610	ENST00000493703		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000394294	ENST00000256646		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000394294	ENST00000602566		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000394294	ENST00000493703		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000264658	ENST00000256646		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000264658	ENST00000602566		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000264658	ENST00000493703		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
Frame-shit	ENST00000577399	ENST00000256646		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
5CDS-intron	ENST00000577399	ENST00000602566		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
5CDS-5UTR	ENST00000577399	ENST00000493703		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000583610	ENST00000331159		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000583610	ENST00000577233		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000394294	ENST00000331159		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000394294	ENST00000577233		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000264658	ENST00000331159		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
intron-3CDS	ENST00000264658	ENST00000577233		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000577399	ENST00000331159		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
Frame-shit	ENST00000577399	ENST00000577233		TCGA	LD	BRCA	TCGA-AR-A254-01A	FBXL20	chr17	37558426	-	SOCS7	chr17	36551562	+
In-frame	ENST00000370500	ENST00000262865		TCGA	LD	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36962832	+
5CDS-3UTR	ENST00000370500	ENST00000489102		TCGA	LD	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36962832	+
5CDS-intron	ENST00000370500	ENST00000451435		TCGA	LD	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36962832	+
5UTR-3CDS	ENST00000494819	ENST00000262865		TCGA	LD	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36962832	+
5UTR-3UTR	ENST00000494819	ENST00000489102		TCGA	LD	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36962832	+
5UTR-intron	ENST00000494819	ENST00000451435		TCGA	LD	BRCA	TCGA-AR-A254-01A	GTF2B	chr1	89357166	-	BPI	chr20	36962832	+
Frame-shit	ENST00000357749	ENST00000253577		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
Frame-shit	ENST00000357749	ENST00000339447		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
Frame-shit	ENST00000357749	ENST00000373394		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5CDS-intron	ENST00000357749	ENST00000534570		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5UTR-3CDS	ENST00000467744	ENST00000253577		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5UTR-3CDS	ENST00000467744	ENST00000339447		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5UTR-3CDS	ENST00000467744	ENST00000373394		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5UTR-intron	ENST00000467744	ENST00000534570		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
intron-3CDS	ENST00000537751	ENST00000253577		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
intron-3CDS	ENST00000537751	ENST00000339447		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
intron-3CDS	ENST00000537751	ENST00000373394		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
intron-intron	ENST00000537751	ENST00000534570		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
Frame-shit	ENST00000358786	ENST00000253577		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
Frame-shit	ENST00000358786	ENST00000339447		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
Frame-shit	ENST00000358786	ENST00000373394		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5CDS-intron	ENST00000358786	ENST00000534570		TCGA	LD	BRCA	TCGA-AR-A255-01A	CHM	chrX	85282495	-	ABCB7	chrX	74334666	-
5UTR-5UTR	ENST00000367689	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000367689	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000367689	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000367689	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000367689	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000367689	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-intron	ENST00000367689	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000357444	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000357444	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000357444	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000357444	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000357444	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000357444	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-intron	ENST00000357444	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000251507	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000251507	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000251507	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000251507	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000251507	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-5UTR	ENST00000251507	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
5UTR-intron	ENST00000251507	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000325589	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000325589	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000325589	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000325589	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000325589	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000325589	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000325589	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367686	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367686	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367686	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367686	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367686	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367686	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000367686	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367687	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367687	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367687	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367687	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367687	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367687	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000367687	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000347255	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000347255	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000347255	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000347255	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000347255	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000347255	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000347255	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000489615	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000489615	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000489615	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000489615	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000489615	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000489615	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000489615	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000478442	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000478442	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000478442	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000478442	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000478442	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000478442	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000478442	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000486220	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000486220	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000486220	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000486220	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000486220	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000486220	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000486220	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000392064	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000392064	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000392064	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000392064	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000392064	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000392064	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000392064	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367688	ENST00000367889		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367688	ENST00000367888		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367688	ENST00000367885		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367688	ENST00000367884		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367688	ENST00000367883		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-5UTR	ENST00000367688	ENST00000367886		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
intron-intron	ENST00000367688	ENST00000461759		TCGA	LD	BRCA	TCGA-AR-A255-01A	RABGAP1L	chr1	174128795	+	MGST3	chr1	165619078	+
3UTR-3CDS	ENST00000579301	ENST00000225823		TCGA	LD	BRCA	TCGA-AR-A255-01A	SMURF2P1	chr17	28937960	+	ASIC2	chr17	31439085	-
3UTR-3CDS	ENST00000579301	ENST00000359872		TCGA	LD	BRCA	TCGA-AR-A255-01A	SMURF2P1	chr17	28937960	+	ASIC2	chr17	31439085	-
3UTR-5UTR	ENST00000579301	ENST00000448983		TCGA	LD	BRCA	TCGA-AR-A255-01A	SMURF2P1	chr17	28937960	+	ASIC2	chr17	31439085	-
5CDS-intron	ENST00000438132	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000438132	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000542263	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000417362	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
5CDS-intron	ENST00000251143	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000543152	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000448695	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-intron	ENST00000544275	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000563675		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000541464		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000381414		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000396229		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000542583		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000219821		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000561503		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
3UTR-intron	ENST00000538853	ENST00000564959		TCGA	LD	BRCA	TCGA-AR-A256-01A	C16orf62	chr16	19603196	+	TMC5	chr16	19508443	+
intron-3CDS	ENST00000264434	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000264434	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000264434	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000264434	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000264434	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-5UTR	ENST00000264434	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000420306	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000420306	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000420306	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000420306	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000420306	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
intron-5UTR	ENST00000420306	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
5UTR-3CDS	ENST00000470096	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
5UTR-3CDS	ENST00000470096	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
5UTR-3CDS	ENST00000470096	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
5UTR-3CDS	ENST00000470096	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
5UTR-3CDS	ENST00000470096	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
5UTR-5UTR	ENST00000470096	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	C2orf42	chr2	70475537	-	TGFA	chr2	70692868	-
In-frame	ENST00000351293	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000351293	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000322635	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000322635	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000394762	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000394762	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000423381	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000423381	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000322680	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000322680	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000305762	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000305762	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000372765	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000372765	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
5UTR-3CDS	ENST00000472912	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
5UTR-3CDS	ENST00000472912	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000444854	ENST00000374094		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
In-frame	ENST00000444854	ENST00000443782		TCGA	LD	BRCA	TCGA-AR-A256-01A	CAMK2G	chr10	75632747	-	AGAP5	chr10	75442552	-
5CDS-intron	ENST00000301764	ENST00000535042		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
5CDS-3UTR	ENST00000301764	ENST00000537328		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
5CDS-3UTR	ENST00000301764	ENST00000543510		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
5CDS-intron	ENST00000450997	ENST00000535042		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
5CDS-3UTR	ENST00000450997	ENST00000537328		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
5CDS-3UTR	ENST00000450997	ENST00000543510		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-intron	ENST00000451943	ENST00000535042		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-3UTR	ENST00000451943	ENST00000537328		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-3UTR	ENST00000451943	ENST00000543510		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-intron	ENST00000538470	ENST00000535042		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-3UTR	ENST00000538470	ENST00000537328		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-3UTR	ENST00000538470	ENST00000543510		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-intron	ENST00000545930	ENST00000535042		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-3UTR	ENST00000545930	ENST00000537328		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
intron-3UTR	ENST00000545930	ENST00000543510		TCGA	LD	BRCA	TCGA-AR-A256-01A	DDB1	chr11	61076455	-	TMEM258	chr11	61556707	-
Frame-shit	ENST00000455140	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
5CDS-intron	ENST00000455140	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
5CDS-intron	ENST00000455140	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-3CDS	ENST00000248070	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000248070	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000248070	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-3CDS	ENST00000535753	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000535753	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000535753	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-3CDS	ENST00000594975	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000594975	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000594975	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-3CDS	ENST00000602009	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000602009	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000602009	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-3CDS	ENST00000597937	ENST00000373647		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000597937	ENST00000493854		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
intron-intron	ENST00000597937	ENST00000373643		TCGA	LD	BRCA	TCGA-AR-A256-01A	EPS15L1	chr19	16472590	-	RABGAP1	chr9	125777822	+
Frame-shit	ENST00000360289	ENST00000359655		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
5CDS-intron	ENST00000360289	ENST00000483572		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
Frame-shit	ENST00000448642	ENST00000359655		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
5CDS-intron	ENST00000448642	ENST00000483572		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
Frame-shit	ENST00000404387	ENST00000359655		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
5CDS-intron	ENST00000404387	ENST00000483572		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
Frame-shit	ENST00000298649	ENST00000359655		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
5CDS-intron	ENST00000298649	ENST00000483572		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
Frame-shit	ENST00000359426	ENST00000359655		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
5CDS-intron	ENST00000359426	ENST00000483572		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
3UTR-3CDS	ENST00000494253	ENST00000359655		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
3UTR-intron	ENST00000494253	ENST00000483572		TCGA	LD	BRCA	TCGA-AR-A256-01A	HK1	chr10	71103745	+	SUPV3L1	chr10	70967549	+
5UTR-intron	ENST00000420083	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000420083	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000420083	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000420083	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000420083	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000420083	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000420083	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000449870	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000449870	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000449870	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000449870	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000449870	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000449870	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000449870	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000318511	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000318511	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000318511	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000318511	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000318511	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000318511	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000318511	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000407004	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000407004	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000407004	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000407004	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000407004	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000407004	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000407004	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000589998	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000589998	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589998	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589998	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589998	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-5UTR	ENST00000589998	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
5UTR-intron	ENST00000589998	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000250241	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000250241	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000250241	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000250241	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000250241	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000250241	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000250241	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000592763	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000592763	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000592763	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000592763	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000592763	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000592763	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000592763	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000588657	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000588657	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000588657	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000588657	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000588657	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000588657	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000588657	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000590261	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000590261	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000590261	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000590261	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000590261	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000590261	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000590261	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000586544	ENST00000413465		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000586544	ENST00000359597		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000586544	ENST00000269305		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000586544	ENST00000455263		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000586544	ENST00000420246		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-5UTR	ENST00000586544	ENST00000445888		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
intron-intron	ENST00000586544	ENST00000574684		TCGA	LD	BRCA	TCGA-AR-A256-01A	ILF3	chr19	10765163	+	TP53	chr17	7579940	-
Frame-shit	ENST00000361999	ENST00000264711		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
5CDS-5UTR	ENST00000361999	ENST00000534855		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
5CDS-5UTR	ENST00000361999	ENST00000468467		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
Frame-shit	ENST00000355123	ENST00000264711		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
5CDS-5UTR	ENST00000355123	ENST00000534855		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
5CDS-5UTR	ENST00000355123	ENST00000468467		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
intron-3CDS	ENST00000406921	ENST00000264711		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
intron-5UTR	ENST00000406921	ENST00000534855		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
intron-5UTR	ENST00000406921	ENST00000468467		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
intron-3CDS	ENST00000407704	ENST00000264711		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
intron-5UTR	ENST00000407704	ENST00000534855		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
intron-5UTR	ENST00000407704	ENST00000468467		TCGA	LD	BRCA	TCGA-AR-A256-01A	ITSN2	chr2	24435519	-	DNAJC27	chr2	25190162	-
Frame-shit	ENST00000419445	ENST00000513200		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
In-frame	ENST00000419445	ENST00000427991		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000419445	ENST00000312498		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000419445	ENST00000329378		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
Frame-shit	ENST00000379615	ENST00000513200		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
In-frame	ENST00000379615	ENST00000427991		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000379615	ENST00000312498		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000379615	ENST00000329378		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
intron-3CDS	ENST00000514178	ENST00000513200		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
intron-3CDS	ENST00000514178	ENST00000427991		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
intron-intron	ENST00000514178	ENST00000312498		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
intron-intron	ENST00000514178	ENST00000329378		TCGA	LD	BRCA	TCGA-AR-A256-01A	PGGT1B	chr5	114588830	-	KIAA0825	chr5	93489829	-
Frame-shit	ENST00000369485	ENST00000369415		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-intron	ENST00000369485	ENST00000359203		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-5UTR	ENST00000369485	ENST00000492783		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
Frame-shit	ENST00000265607	ENST00000369415		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-intron	ENST00000265607	ENST00000359203		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-5UTR	ENST00000265607	ENST00000492783		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
Frame-shit	ENST00000538899	ENST00000369415		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-intron	ENST00000538899	ENST00000359203		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-5UTR	ENST00000538899	ENST00000492783		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
intron-3CDS	ENST00000369475	ENST00000369415		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
intron-intron	ENST00000369475	ENST00000359203		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
intron-5UTR	ENST00000369475	ENST00000492783		TCGA	LD	BRCA	TCGA-AR-A256-01A	RNGTT	chr6	89388072	-	RRAGD	chr6	90097309	-
5CDS-5UTR	ENST00000368715	ENST00000368713		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000368715	ENST00000368712		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5UTR-5UTR	ENST00000481009	ENST00000368713		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5UTR-5UTR	ENST00000481009	ENST00000368712		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000354332	ENST00000368713		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000354332	ENST00000368712		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000368716	ENST00000368713		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000368716	ENST00000368712		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000368714	ENST00000368713		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5CDS-5UTR	ENST00000368714	ENST00000368712		TCGA	LD	BRCA	TCGA-AR-A256-01A	S100A4	chr1	153517130	-	S100A3	chr1	153520966	-
5UTR-3CDS	ENST00000358026	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000358026	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000358026	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-3CDS	ENST00000344626	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000344626	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000344626	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-3CDS	ENST00000429416	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000429416	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000429416	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-3CDS	ENST00000541122	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000541122	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000541122	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-3CDS	ENST00000589677	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000589677	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000589677	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-3CDS	ENST00000444061	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000444061	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-intron	ENST00000444061	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-3CDS	ENST00000590574	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000590574	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000590574	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-3CDS	ENST00000413806	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000413806	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000413806	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-3CDS	ENST00000450717	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000450717	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000450717	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-3CDS	ENST00000538456	ENST00000264832		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000538456	ENST00000423829		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
intron-intron	ENST00000538456	ENST00000585443		TCGA	LD	BRCA	TCGA-AR-A256-01A	SMARCA4	chr19	11071850	+	ICAM1	chr19	10385441	+
5UTR-5UTR	ENST00000280098	ENST00000431877		TCGA	LD	BRCA	TCGA-AR-A256-01A	SPOPL	chr2	139259689	+	SSFA2	chr2	182756759	+
5UTR-5UTR	ENST00000280098	ENST00000320370		TCGA	LD	BRCA	TCGA-AR-A256-01A	SPOPL	chr2	139259689	+	SSFA2	chr2	182756759	+
5UTR-5UTR	ENST00000280098	ENST00000409001		TCGA	LD	BRCA	TCGA-AR-A256-01A	SPOPL	chr2	139259689	+	SSFA2	chr2	182756759	+
5UTR-intron	ENST00000280098	ENST00000428267		TCGA	LD	BRCA	TCGA-AR-A256-01A	SPOPL	chr2	139259689	+	SSFA2	chr2	182756759	+
5UTR-intron	ENST00000280098	ENST00000409136		TCGA	LD	BRCA	TCGA-AR-A256-01A	SPOPL	chr2	139259689	+	SSFA2	chr2	182756759	+
5UTR-intron	ENST00000280098	ENST00000467172		TCGA	LD	BRCA	TCGA-AR-A256-01A	SPOPL	chr2	139259689	+	SSFA2	chr2	182756759	+
5CDS-intron	ENST00000393651	ENST00000356362		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000393651	ENST00000469408		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
5CDS-intron	ENST00000357311	ENST00000356362		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000357311	ENST00000469408		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
5CDS-intron	ENST00000489828	ENST00000356362		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000489828	ENST00000469408		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
intron-intron	ENST00000493638	ENST00000356362		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000493638	ENST00000469408		TCGA	LD	BRCA	TCGA-AR-A256-01A	SRPK2	chr7	104844075	-	PUS7	chr7	105148991	-
Frame-shit	ENST00000278742	ENST00000393446		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
Frame-shit	ENST00000278742	ENST00000265437		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
Frame-shit	ENST00000278742	ENST00000393451		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
Frame-shit	ENST00000278742	ENST00000393449		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
Frame-shit	ENST00000278742	ENST00000323984		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
Frame-shit	ENST00000278742	ENST00000432298		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
Frame-shit	ENST00000278742	ENST00000422922		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000278742	ENST00000487459		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000278742	ENST00000393443		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000278742	ENST00000393447		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000278742	ENST00000393444		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000278742	ENST00000465133		TCGA	LD	BRCA	TCGA-AR-A256-01A	ST14	chr11	130029955	+	ST7	chr7	116739816	+
In-frame	ENST00000263955	ENST00000260983		TCGA	LD	BRCA	TCGA-AR-A256-01A	STK17B	chr2	197008284	-	HECW2	chr2	197208488	-
5CDS-5UTR	ENST00000263955	ENST00000409111		TCGA	LD	BRCA	TCGA-AR-A256-01A	STK17B	chr2	197008284	-	HECW2	chr2	197208488	-
In-frame	ENST00000409228	ENST00000260983		TCGA	LD	BRCA	TCGA-AR-A256-01A	STK17B	chr2	197008284	-	HECW2	chr2	197208488	-
5CDS-5UTR	ENST00000409228	ENST00000409111		TCGA	LD	BRCA	TCGA-AR-A256-01A	STK17B	chr2	197008284	-	HECW2	chr2	197208488	-
Frame-shit	ENST00000433529	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000433529	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000433529	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000433529	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000433529	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
5CDS-5UTR	ENST00000433529	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000415783	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000415783	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000415783	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000415783	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000415783	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
5CDS-5UTR	ENST00000415783	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000282574	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000282574	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000282574	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000282574	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000282574	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
5CDS-5UTR	ENST00000282574	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000445587	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000445587	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000445587	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000445587	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000445587	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
5CDS-5UTR	ENST00000445587	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000482876	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000482876	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000482876	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000482876	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
intron-3CDS	ENST00000482876	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
intron-5UTR	ENST00000482876	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000416149	ENST00000295400		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000416149	ENST00000445399		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000416149	ENST00000418333		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000416149	ENST00000450929		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000416149	ENST00000444975		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
5CDS-5UTR	ENST00000416149	ENST00000460808		TCGA	LD	BRCA	TCGA-AR-A256-01A	TIA1	chr2	70475537	-	TGFA	chr2	70692868	-
Frame-shit	ENST00000219476	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000219476	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000382538	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000382538	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000401874	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000401874	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000353929	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000353929	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000439673	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000439673	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000350773	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000350773	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000568454	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000568454	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000568366	ENST00000253934		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000568366	ENST00000566264		TCGA	LD	BRCA	TCGA-AR-A256-01A	TSC2	chr16	2098754	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000211998	ENST00000446342		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000211998	ENST00000494287		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000211998	ENST00000372764		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000211998	ENST00000372762		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
Frame-shit	ENST00000372755	ENST00000446342		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000372755	ENST00000494287		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000372755	ENST00000372764		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000372755	ENST00000372762		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
3UTR-3CDS	ENST00000478896	ENST00000446342		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
3UTR-intron	ENST00000478896	ENST00000494287		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
3UTR-intron	ENST00000478896	ENST00000372764		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
3UTR-intron	ENST00000478896	ENST00000372762		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
Frame-shit	ENST00000417648	ENST00000446342		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000417648	ENST00000494287		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000417648	ENST00000372764		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
5CDS-intron	ENST00000417648	ENST00000372762		TCGA	LD	BRCA	TCGA-AR-A256-01A	VCL	chr10	75758133	+	PLAU	chr10	75674534	+
Frame-shit	ENST00000272321	ENST00000409558		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
Frame-shit	ENST00000272321	ENST00000272322		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
Frame-shit	ENST00000272321	ENST00000354504		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000409199	ENST00000409558		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000409199	ENST00000272322		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000409199	ENST00000354504		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000409120	ENST00000409558		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000409120	ENST00000272322		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000409120	ENST00000354504		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000398544	ENST00000409558		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000398544	ENST00000272322		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
intron-3CDS	ENST00000398544	ENST00000354504		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
Frame-shit	ENST00000409562	ENST00000409558		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
Frame-shit	ENST00000409562	ENST00000272322		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
Frame-shit	ENST00000409562	ENST00000354504		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
5UTR-3CDS	ENST00000409835	ENST00000409558		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
5UTR-3CDS	ENST00000409835	ENST00000272322		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
5UTR-3CDS	ENST00000409835	ENST00000354504		TCGA	LD	BRCA	TCGA-AR-A256-01A	WDPCP	chr2	63719990	-	VPS54	chr2	64176297	-
Frame-shit	ENST00000431639	ENST00000407327		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000431639	ENST00000335757		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000431639	ENST00000586078		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
5CDS-intron	ENST00000431639	ENST00000588214		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000316024	ENST00000407327		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000316024	ENST00000335757		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000316024	ENST00000586078		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
5CDS-intron	ENST00000316024	ENST00000588214		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000457584	ENST00000407327		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000457584	ENST00000335757		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000457584	ENST00000586078		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
5CDS-intron	ENST00000457584	ENST00000588214		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000396463	ENST00000407327		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000396463	ENST00000335757		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000396463	ENST00000586078		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
5CDS-intron	ENST00000396463	ENST00000588214		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
intron-3CDS	ENST00000534050	ENST00000407327		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
intron-3CDS	ENST00000534050	ENST00000335757		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
intron-3CDS	ENST00000534050	ENST00000586078		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
intron-intron	ENST00000534050	ENST00000588214		TCGA	LD	BRCA	TCGA-AR-A256-01A	WRAP53	chr17	7592640	+	SLC44A2	chr19	10746999	+
Frame-shit	ENST00000359154	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
5CDS-3UTR	ENST00000359154	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
Frame-shit	ENST00000448661	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
5CDS-3UTR	ENST00000448661	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
Frame-shit	ENST00000569174	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
5CDS-3UTR	ENST00000569174	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
Frame-shit	ENST00000356003	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
5CDS-3UTR	ENST00000356003	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
intron-3CDS	ENST00000544162	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
intron-3UTR	ENST00000544162	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
intron-3CDS	ENST00000542271	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
intron-3UTR	ENST00000542271	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
intron-3CDS	ENST00000568684	ENST00000333213		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
intron-3UTR	ENST00000568684	ENST00000580013		TCGA	LD	BRCA	TCGA-AR-A256-01A	WWP2	chr16	69820983	+	TSEN54	chr17	73517490	+
Frame-shit	ENST00000414563	ENST00000367121		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
Frame-shit	ENST00000414563	ENST00000367122		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
Frame-shit	ENST00000414563	ENST00000355585		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
5CDS-intron	ENST00000414563	ENST00000449859		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
5CDS-intron	ENST00000414563	ENST00000367112		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
Frame-shit	ENST00000359775	ENST00000367121		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
Frame-shit	ENST00000359775	ENST00000367122		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
Frame-shit	ENST00000359775	ENST00000355585		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
5CDS-intron	ENST00000359775	ENST00000449859		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
5CDS-intron	ENST00000359775	ENST00000367112		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
3UTR-3CDS	ENST00000341375	ENST00000367121		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
3UTR-3CDS	ENST00000341375	ENST00000367122		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
3UTR-3CDS	ENST00000341375	ENST00000355585		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
3UTR-intron	ENST00000341375	ENST00000449859		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
3UTR-intron	ENST00000341375	ENST00000367112		TCGA	LD	BRCA	TCGA-AR-A256-01A	ZDHHC14	chr6	158074659	+	SYNJ2	chr6	158509692	+
Frame-shit	ENST00000378137	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
Frame-shit	ENST00000378137	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
Frame-shit	ENST00000378137	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
5CDS-intron	ENST00000378137	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
5CDS-intron	ENST00000378137	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
Frame-shit	ENST00000325718	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
Frame-shit	ENST00000325718	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
Frame-shit	ENST00000325718	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
5CDS-intron	ENST00000325718	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
5CDS-intron	ENST00000325718	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000579179	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000579179	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000579179	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
intron-intron	ENST00000579179	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
intron-intron	ENST00000579179	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	MLLT6	chr17	36865828	+	KIRREL3	chr11	126343361	-
5CDS-intron	ENST00000268712	ENST00000532485		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000268712	ENST00000530182		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000268712	ENST00000526597		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000268712	ENST00000533873		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-5UTR	ENST00000268712	ENST00000538157		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000268712	ENST00000544113		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000395851	ENST00000532485		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000395851	ENST00000530182		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000395851	ENST00000526597		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000395851	ENST00000533873		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-5UTR	ENST00000395851	ENST00000538157		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5CDS-intron	ENST00000395851	ENST00000544113		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395857	ENST00000532485		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395857	ENST00000530182		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395857	ENST00000526597		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395857	ENST00000533873		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-5UTR	ENST00000395857	ENST00000538157		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395857	ENST00000544113		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395848	ENST00000532485		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395848	ENST00000530182		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395848	ENST00000526597		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395848	ENST00000533873		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-5UTR	ENST00000395848	ENST00000538157		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000395848	ENST00000544113		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000583226	ENST00000532485		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000583226	ENST00000530182		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000583226	ENST00000526597		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000583226	ENST00000533873		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-5UTR	ENST00000583226	ENST00000538157		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
intron-intron	ENST00000583226	ENST00000544113		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	15995177	-	ACER3	chr11	76579164	+
5UTR-3CDS	ENST00000268712	ENST00000308488		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
5UTR-3CDS	ENST00000268712	ENST00000360355		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
5UTR-3CDS	ENST00000268712	ENST00000480887		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
5UTR-intron	ENST00000268712	ENST00000530604		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395851	ENST00000308488		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395851	ENST00000360355		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395851	ENST00000480887		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-intron	ENST00000395851	ENST00000530604		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395857	ENST00000308488		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395857	ENST00000360355		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395857	ENST00000480887		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-intron	ENST00000395857	ENST00000530604		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395848	ENST00000308488		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395848	ENST00000360355		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000395848	ENST00000480887		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-intron	ENST00000395848	ENST00000530604		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000583226	ENST00000308488		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000583226	ENST00000360355		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-3CDS	ENST00000583226	ENST00000480887		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
intron-intron	ENST00000583226	ENST00000530604		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	NCOR1	chr17	16118676	-	RSF1	chr11	77396204	-
Frame-shit	ENST00000356136	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000356136	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000356136	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-5UTR	ENST00000356136	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-intron	ENST00000356136	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000528420	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000528420	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000528420	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-5UTR	ENST00000528420	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-intron	ENST00000528420	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000533454	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000533454	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000533454	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-5UTR	ENST00000533454	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-intron	ENST00000533454	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000531818	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000531818	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000531818	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-5UTR	ENST00000531818	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-intron	ENST00000531818	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000532130	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000532130	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000532130	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-5UTR	ENST00000532130	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-intron	ENST00000532130	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000539288	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000539288	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
Frame-shit	ENST00000539288	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-5UTR	ENST00000539288	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
5CDS-intron	ENST00000539288	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000525872	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000525872	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000525872	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-5UTR	ENST00000525872	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-intron	ENST00000525872	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000538870	ENST00000525144		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000538870	ENST00000529097		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000538870	ENST00000525704		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-5UTR	ENST00000538870	ENST00000533026		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-intron	ENST00000538870	ENST00000416561		TCGA	LD	BRCA	TCGA-AR-A2LJ-01A	UVRAG	chr11	75728024	+	KIRREL3	chr11	126432807	-
intron-3CDS	ENST00000414007	ENST00000359651		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000414007	ENST00000367284		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000414007	ENST00000367283		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-intron	ENST00000414007	ENST00000495848		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000419187	ENST00000359651		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000419187	ENST00000367284		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000419187	ENST00000367283		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-intron	ENST00000419187	ENST00000495848		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000471256	ENST00000359651		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000471256	ENST00000367284		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-3CDS	ENST00000471256	ENST00000367283		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
intron-intron	ENST00000471256	ENST00000495848		TCGA	LD	BRCA	TCGA-AR-A2LK-01A	SRGAP2	chr1	144014093	+	ELF3	chr1	201981768	+
5CDS-5UTR	ENST00000260600	ENST00000335934		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
5CDS-5UTR	ENST00000260600	ENST00000238721		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
5CDS-intron	ENST00000260600	ENST00000313482		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
5CDS-intron	ENST00000260600	ENST00000407482		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
5CDS-intron	ENST00000260600	ENST00000417886		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-5UTR	ENST00000405392	ENST00000335934		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-5UTR	ENST00000405392	ENST00000238721		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000405392	ENST00000313482		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000405392	ENST00000407482		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000405392	ENST00000417886		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-5UTR	ENST00000450524	ENST00000335934		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-5UTR	ENST00000450524	ENST00000238721		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000450524	ENST00000313482		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000450524	ENST00000407482		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000450524	ENST00000417886		TCGA	LD	BRCA	TCGA-AR-A2LL-01A	ADCY3	chr2	25141182	-	TP53I3	chr2	24307730	-
5CDS-5UTR	ENST00000444129	ENST00000395782		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000444129	ENST00000395783		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000444129	ENST00000435340		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000444129	ENST00000255389		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000444129	ENST00000395781		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000444129	ENST00000484838		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000421138	ENST00000395782		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000421138	ENST00000395783		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000421138	ENST00000435340		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000421138	ENST00000255389		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000421138	ENST00000395781		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000421138	ENST00000484838		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RECQL	chr12	21652489	-	PEMT	chr17	17480341	-
5CDS-3UTR	ENST00000331738	ENST00000552864		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RSRC2	chr12	123011395	-	LIN7A	chr12	81191505	-
5UTR-3UTR	ENST00000354654	ENST00000552864		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RSRC2	chr12	123011395	-	LIN7A	chr12	81191505	-
intron-3UTR	ENST00000392442	ENST00000552864		TCGA	LD	BRCA	TCGA-AR-A2LM-01A	RSRC2	chr12	123011395	-	LIN7A	chr12	81191505	-
5CDS-5UTR	ENST00000547776	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
5CDS-intron	ENST00000547776	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
5CDS-5UTR	ENST00000329257	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
5CDS-intron	ENST00000329257	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
5CDS-5UTR	ENST00000547010	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
5CDS-intron	ENST00000547010	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000341752	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000341752	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000549558	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000549558	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000550693	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000550693	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000549025	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000549025	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000549493	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000549493	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000547446	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000547446	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000333732	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000333732	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000546568	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000546568	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000332712	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000332712	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000546960	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000546960	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-5UTR	ENST00000550833	ENST00000548187		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
intron-intron	ENST00000550833	ENST00000358859		TCGA	LD	BRCA	TCGA-AR-A2LN-01A	ANKS1B	chr12	100048845	-	CCER1	chr12	91299641	-
Frame-shit	ENST00000336665	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
5CDS-intron	ENST00000336665	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
Frame-shit	ENST00000304032	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
5CDS-intron	ENST00000304032	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
intron-3CDS	ENST00000409538	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
intron-intron	ENST00000409538	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
intron-3CDS	ENST00000428334	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
intron-intron	ENST00000428334	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
Frame-shit	ENST00000409457	ENST00000263849		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
5CDS-intron	ENST00000409457	ENST00000521176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	AGAP1	chr2	236403493	+	ZC2HC1A	chr8	79627456	+
5UTR-3CDS	ENST00000562840	ENST00000370314		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
5UTR-3CDS	ENST00000562840	ENST00000535043		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
5UTR-intron	ENST00000562840	ENST00000497894		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
intron-3CDS	ENST00000253461	ENST00000370314		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
intron-3CDS	ENST00000253461	ENST00000535043		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
intron-intron	ENST00000253461	ENST00000497894		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
intron-3CDS	ENST00000567970	ENST00000370314		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
intron-3CDS	ENST00000567970	ENST00000535043		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
intron-intron	ENST00000567970	ENST00000497894		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	C16orf95	chr16	87336259	-	GABRA3	chrX	151514174	-
5UTR-5UTR	ENST00000502463	ENST00000501396		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CASC11	chr8	128746071	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000502463	ENST00000502082		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CASC11	chr8	128746071	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000502463	ENST00000523825		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CASC11	chr8	128746071	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000502463	ENST00000502056		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CASC11	chr8	128746071	-	CASC8	chr8	128433208	-
intron-3CDS	ENST00000374706	ENST00000225737		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
intron-3CDS	ENST00000374706	ENST00000395536		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
intron-5UTR	ENST00000374706	ENST00000572155		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
5UTR-3CDS	ENST00000265375	ENST00000225737		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
5UTR-3CDS	ENST00000265375	ENST00000395536		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
5UTR-5UTR	ENST00000265375	ENST00000572155		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
In-frame	ENST00000339497	ENST00000225737		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
In-frame	ENST00000339497	ENST00000395536		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
5CDS-5UTR	ENST00000339497	ENST00000572155		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
In-frame	ENST00000374704	ENST00000225737		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
In-frame	ENST00000374704	ENST00000395536		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
5CDS-5UTR	ENST00000374704	ENST00000572155		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
3UTR-3CDS	ENST00000492478	ENST00000225737		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
3UTR-3CDS	ENST00000492478	ENST00000395536		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
3UTR-5UTR	ENST00000492478	ENST00000572155		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CCNY	chr10	35626135	+	AKAP10	chr17	19871774	-
Frame-shit	ENST00000513761	ENST00000453744		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000394801		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000394803		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000394804		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000343106		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000321805		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000350435		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000338145		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000513761	ENST00000349311		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000513761	ENST00000504211		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000513761	ENST00000357194		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000513761	ENST00000505207		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000513761	ENST00000507845		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000513761	ENST00000502404		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000513761	ENST00000513098		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000453744		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000394801		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000394803		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000394804		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000343106		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000321805		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000350435		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000338145		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000347613	ENST00000349311		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000347613	ENST00000504211		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000347613	ENST00000357194		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000347613	ENST00000505207		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000347613	ENST00000507845		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000347613	ENST00000502404		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000347613	ENST00000513098		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000453744		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000394801		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000394803		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000394804		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000343106		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000321805		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000350435		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000338145		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
Frame-shit	ENST00000360642	ENST00000349311		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000360642	ENST00000504211		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000360642	ENST00000357194		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000360642	ENST00000505207		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000360642	ENST00000507845		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000360642	ENST00000502404		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000360642	ENST00000513098		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000453744		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000394801		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000394803		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000394804		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000343106		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000321805		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000350435		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000338145		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
In-frame	ENST00000504131	ENST00000349311		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000504131	ENST00000504211		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000504131	ENST00000357194		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000504131	ENST00000505207		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000504131	ENST00000507845		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000504131	ENST00000502404		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-5UTR	ENST00000504131	ENST00000513098		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000453744		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000394801		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000394803		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000394804		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000343106		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000321805		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000350435		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000338145		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-3CDS	ENST00000506924	ENST00000349311		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-5UTR	ENST00000506924	ENST00000504211		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-5UTR	ENST00000506924	ENST00000357194		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-5UTR	ENST00000506924	ENST00000505207		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-5UTR	ENST00000506924	ENST00000507845		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-5UTR	ENST00000506924	ENST00000502404		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
3UTR-5UTR	ENST00000506924	ENST00000513098		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLCN3	chr4	170557239	+	UBE2D3	chr4	103731012	-
5CDS-3UTR	ENST00000375784	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000375784	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-3UTR	ENST00000375779	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000375779	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-3UTR	ENST00000375780	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000375780	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-3UTR	ENST00000395892	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000395892	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000457485	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000457485	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000423804	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000423804	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000447369	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000447369	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000447338	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000447338	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000422167	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000422167	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000438708	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000438708	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000431921	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000431921	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000415179	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000415179	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000418285	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000418285	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000423055	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000423055	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000442045	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000442045	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000435242	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000435242	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000400052	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000400052	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000383404	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000383404	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000383405	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000383405	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000400058	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000400058	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000456863	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000456863	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000434202	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000434202	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000420458	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000420458	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000433916	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000433916	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000425464	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000425464	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000423143	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000423143	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000438750	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000438750	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-3UTR	ENST00000451546	ENST00000314332		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
intron-intron	ENST00000451546	ENST00000396984		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	CLIC1	chr6	31701343	-	HIST1H2BC	chr6	26115363	-
5CDS-5UTR	ENST00000271069	ENST00000261168		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000271069	ENST00000543189		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000271069	ENST00000536444		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000271069	ENST00000544627		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-3UTR	ENST00000271069	ENST00000541654		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000271069	ENST00000540793		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000373672	ENST00000261168		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000373672	ENST00000543189		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000373672	ENST00000536444		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000373672	ENST00000544627		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-3UTR	ENST00000373672	ENST00000541654		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000373672	ENST00000540793		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000461217	ENST00000261168		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000461217	ENST00000543189		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000461217	ENST00000536444		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000461217	ENST00000544627		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-3UTR	ENST00000461217	ENST00000541654		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000461217	ENST00000540793		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000373668	ENST00000261168		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000373668	ENST00000543189		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000373668	ENST00000536444		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000373668	ENST00000544627		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-3UTR	ENST00000373668	ENST00000541654		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000373668	ENST00000540793		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	COL16A1	chr1	32130773	-	ATF7IP	chr12	14576843	+
intron-3CDS	ENST00000543760	ENST00000263125		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
intron-3CDS	ENST00000543760	ENST00000397176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
intron-3CDS	ENST00000543760	ENST00000539722		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
In-frame	ENST00000366672	ENST00000263125		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
In-frame	ENST00000366672	ENST00000397176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
In-frame	ENST00000366672	ENST00000539722		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
5UTR-3CDS	ENST00000541865	ENST00000263125		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
5UTR-3CDS	ENST00000541865	ENST00000397176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
5UTR-3CDS	ENST00000541865	ENST00000539722		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
intron-3CDS	ENST00000485438	ENST00000263125		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
intron-3CDS	ENST00000485438	ENST00000397176		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
intron-3CDS	ENST00000485438	ENST00000539722		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GALNT2	chr1	230203153	+	PRKCQ	chr10	6506366	-
5UTR-3CDS	ENST00000507917	ENST00000282020		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000507917	ENST00000505687		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000507917	ENST00000510992		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-3CDS	ENST00000295448	ENST00000282020		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000295448	ENST00000505687		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000295448	ENST00000510992		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-3CDS	ENST00000507534	ENST00000282020		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000507534	ENST00000505687		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000507534	ENST00000510992		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-3CDS	ENST00000509756	ENST00000282020		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000509756	ENST00000505687		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000509756	ENST00000510992		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-3CDS	ENST00000511187	ENST00000282020		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000511187	ENST00000505687		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
5UTR-intron	ENST00000511187	ENST00000510992		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	GNPDA2	chr4	44728491	-	GRID2	chr4	94316758	+
intron-3CDS	ENST00000013125	ENST00000532462		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MAP4K5	chr14	51027758	-	PYGL	chr14	51404555	-
intron-intron	ENST00000013125	ENST00000544180		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MAP4K5	chr14	51027758	-	PYGL	chr14	51404555	-
intron-intron	ENST00000013125	ENST00000216392		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MAP4K5	chr14	51027758	-	PYGL	chr14	51404555	-
intron-3CDS	ENST00000557578	ENST00000532462		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MAP4K5	chr14	51027758	-	PYGL	chr14	51404555	-
intron-intron	ENST00000557578	ENST00000544180		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MAP4K5	chr14	51027758	-	PYGL	chr14	51404555	-
intron-intron	ENST00000557578	ENST00000216392		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MAP4K5	chr14	51027758	-	PYGL	chr14	51404555	-
Frame-shit	ENST00000262891	ENST00000221455		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MARK4	chr19	45803113	+	CLASRP	chr19	45555329	+
Frame-shit	ENST00000262891	ENST00000391953		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MARK4	chr19	45803113	+	CLASRP	chr19	45555329	+
Frame-shit	ENST00000262891	ENST00000544944		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MARK4	chr19	45803113	+	CLASRP	chr19	45555329	+
Frame-shit	ENST00000300843	ENST00000221455		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MARK4	chr19	45803113	+	CLASRP	chr19	45555329	+
Frame-shit	ENST00000300843	ENST00000391953		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MARK4	chr19	45803113	+	CLASRP	chr19	45555329	+
Frame-shit	ENST00000300843	ENST00000544944		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MARK4	chr19	45803113	+	CLASRP	chr19	45555329	+
In-frame	ENST00000323019	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000323019	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000323019	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
5CDS-intron	ENST00000323019	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000578174	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000578174	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000578174	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
5CDS-intron	ENST00000578174	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395704	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395704	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395704	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
5CDS-intron	ENST00000395704	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395703	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395703	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395703	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
5CDS-intron	ENST00000395703	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
3UTR-3CDS	ENST00000577216	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
3UTR-3CDS	ENST00000577216	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
3UTR-3CDS	ENST00000577216	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
3UTR-intron	ENST00000577216	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000578621	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000578621	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000578621	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
5CDS-intron	ENST00000578621	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395706	ENST00000374660		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395706	ENST00000361713		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000395706	ENST00000602533		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
5CDS-intron	ENST00000395706	ENST00000475522		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18166562	+	ANKRD30A	chr10	37440988	+
In-frame	ENST00000323019	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
5CDS-intron	ENST00000323019	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
5CDS-intron	ENST00000323019	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-3CDS	ENST00000578174	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000578174	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000578174	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
3UTR-3CDS	ENST00000395704	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
3UTR-intron	ENST00000395704	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
3UTR-intron	ENST00000395704	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-3CDS	ENST00000395703	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000395703	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000395703	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-3CDS	ENST00000577216	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000577216	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000577216	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-3CDS	ENST00000578621	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000578621	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-intron	ENST00000578621	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
In-frame	ENST00000395706	ENST00000353383		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
5CDS-intron	ENST00000395706	ENST00000489697		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
5CDS-intron	ENST00000395706	ENST00000261641		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	MIEF2	chr17	18168078	+	RAI1	chr17	17707070	+
intron-3CDS	ENST00000468311	ENST00000368069		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	PFDN2	chr1	161071838	-	COPA	chr1	160260006	-
intron-3CDS	ENST00000468311	ENST00000241704		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	PFDN2	chr1	161071838	-	COPA	chr1	160260006	-
Frame-shit	ENST00000368010	ENST00000368069		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	PFDN2	chr1	161071838	-	COPA	chr1	160260006	-
In-frame	ENST00000368010	ENST00000241704		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	PFDN2	chr1	161071838	-	COPA	chr1	160260006	-
intron-3CDS	ENST00000379933	ENST00000361902		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
intron-3CDS	ENST00000379933	ENST00000474923		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
intron-5UTR	ENST00000379933	ENST00000483058		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-3CDS	ENST00000379938	ENST00000361902		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-3CDS	ENST00000379938	ENST00000474923		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-5UTR	ENST00000379938	ENST00000483058		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-3CDS	ENST00000334984	ENST00000361902		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-3CDS	ENST00000334984	ENST00000474923		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-5UTR	ENST00000334984	ENST00000483058		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-3CDS	ENST00000349384	ENST00000361902		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-3CDS	ENST00000349384	ENST00000474923		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
5UTR-5UTR	ENST00000349384	ENST00000483058		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	RREB1	chr6	7108293	+	GPX6	chr6	28478681	-
Frame-shit	ENST00000383836	ENST00000285046		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
5CDS-intron	ENST00000383836	ENST00000543601		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
5CDS-intron	ENST00000383836	ENST00000476851		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
Frame-shit	ENST00000360413	ENST00000285046		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
5CDS-intron	ENST00000360413	ENST00000543601		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
5CDS-intron	ENST00000360413	ENST00000476851		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
intron-3CDS	ENST00000433332	ENST00000285046		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
intron-intron	ENST00000433332	ENST00000543601		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
intron-intron	ENST00000433332	ENST00000476851		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	SRGAP3	chr3	9290569	-	FGD5	chr3	14860463	+
Frame-shit	ENST00000271469	ENST00000234739		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
5CDS-intron	ENST00000271469	ENST00000473292		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
Frame-shit	ENST00000367926	ENST00000234739		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
5CDS-intron	ENST00000367926	ENST00000473292		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
intron-3CDS	ENST00000476240	ENST00000234739		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
intron-intron	ENST00000476240	ENST00000473292		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
Frame-shit	ENST00000367924	ENST00000234739		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
5CDS-intron	ENST00000367924	ENST00000473292		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
Frame-shit	ENST00000367925	ENST00000234739		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
5CDS-intron	ENST00000367925	ENST00000473292		TCGA	LD	BRCA	TCGA-AR-A2LR-01A	UAP1	chr1	162536138	+	BCL9	chr1	147090622	+
intron-3CDS	ENST00000608456	ENST00000510197		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608456	ENST00000339906		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608456	ENST00000515604		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608456	ENST00000424749		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-intron	ENST00000608456	ENST00000515589		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000368377	ENST00000510197		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000368377	ENST00000339906		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000368377	ENST00000515604		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000368377	ENST00000424749		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
5CDS-intron	ENST00000368377	ENST00000515589		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608295	ENST00000510197		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608295	ENST00000339906		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608295	ENST00000515604		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608295	ENST00000424749		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-intron	ENST00000608295	ENST00000515589		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000398153	ENST00000510197		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000398153	ENST00000339906		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000398153	ENST00000515604		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
In-frame	ENST00000398153	ENST00000424749		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
5CDS-intron	ENST00000398153	ENST00000515589		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608284	ENST00000510197		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608284	ENST00000339906		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608284	ENST00000515604		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-3CDS	ENST00000608284	ENST00000424749		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
intron-intron	ENST00000608284	ENST00000515589		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	HDDC2	chr6	125613987	-	FAM47E	chr4	77184857	+
5CDS-intron	ENST00000297423	ENST00000220676		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	SPIDR	chr8	48206619	+	RP1	chr8	55667363	+
5CDS-intron	ENST00000518074	ENST00000220676		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	SPIDR	chr8	48206619	+	RP1	chr8	55667363	+
5CDS-intron	ENST00000541342	ENST00000220676		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	SPIDR	chr8	48206619	+	RP1	chr8	55667363	+
3UTR-intron	ENST00000521214	ENST00000220676		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	SPIDR	chr8	48206619	+	RP1	chr8	55667363	+
intron-intron	ENST00000517693	ENST00000220676		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	SPIDR	chr8	48206619	+	RP1	chr8	55667363	+
intron-intron	ENST00000518060	ENST00000220676		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	SPIDR	chr8	48206619	+	RP1	chr8	55667363	+
Frame-shit	ENST00000331569	ENST00000338825		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	ZNF703	chr8	37553740	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000331569	ENST00000520657		TCGA	LD	BRCA	TCGA-AR-A5QQ-01A	ZNF703	chr8	37553740	+	EIF4EBP1	chr8	37914599	+
Frame-shit	ENST00000346672	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000346672	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000346672	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000346672	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000346672	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000360962	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000360962	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000360962	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000360962	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000360962	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000527634	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000527634	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000527634	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000527634	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000527634	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000540737	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000540737	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000540737	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000540737	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000540737	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000532565	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000532565	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000532565	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000532565	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000532565	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000525449	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000525449	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000525449	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000525449	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
5CDS-3UTR	ENST00000525449	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
intron-3CDS	ENST00000527368	ENST00000398645		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
intron-3CDS	ENST00000527368	ENST00000529006		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
intron-3UTR	ENST00000527368	ENST00000526258		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
intron-3UTR	ENST00000527368	ENST00000308783		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
intron-3UTR	ENST00000527368	ENST00000530342		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	C11orf80	chr11	66583670	+	KDM2A	chr11	67015752	+
Frame-shit	ENST00000217402	ENST00000342704		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000375279		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000344201		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000397798		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000346541		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000397800		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000492345		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
Frame-shit	ENST00000217402	ENST00000359606		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
5CDS-3UTR	ENST00000217402	ENST00000491618		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
5CDS-intron	ENST00000217402	ENST00000543126		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32210921	+
5CDS-5UTR	ENST00000331493	ENST00000572316		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000331493	ENST00000354968		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000331493	ENST00000393450		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000517484	ENST00000572316		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000517484	ENST00000354968		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000517484	ENST00000393450		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000520802	ENST00000572316		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000520802	ENST00000354968		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000520802	ENST00000393450		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	EFCAB13	chr17	45492285	+	MYL4	chr17	45286755	+
intron-intron	ENST00000394235	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000394235	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000394235	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000394235	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000394235	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000394235	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000379549	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000379549	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000379549	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000379549	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000379549	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000379550	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000379550	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000379550	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000379550	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000379550	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000265495	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000265495	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000265495	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000265495	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000265495	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000358635	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000358635	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000358635	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000358635	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000358635	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000510408	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000510408	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-intron	ENST00000510408	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000510408	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
5CDS-5UTR	ENST00000510408	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000512372		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000515489	ENST00000367980		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000515489	ENST00000367983		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000437437		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000479324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000442691		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000412844		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000428574		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000505005		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000508740		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000367982		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000508387		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000511944		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000504010		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000511748		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000511676		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000502985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000367981		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000515621		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000367984		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000367985		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-intron	ENST00000515489	ENST00000367979		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000515489	ENST00000506209		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
intron-5UTR	ENST00000515489	ENST00000515452		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	ELF2	chr4	140005287	-	NR1I3	chr1	161207973	-
In-frame	ENST00000530927	ENST00000338882		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	GMDS	chr6	1930337	-	METTL24	chr6	110644075	-
5CDS-5UTR	ENST00000530927	ENST00000490043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	GMDS	chr6	1930337	-	METTL24	chr6	110644075	-
In-frame	ENST00000380815	ENST00000338882		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	GMDS	chr6	1930337	-	METTL24	chr6	110644075	-
5CDS-5UTR	ENST00000380815	ENST00000490043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	GMDS	chr6	1930337	-	METTL24	chr6	110644075	-
intron-3CDS	ENST00000467288	ENST00000338882		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	GMDS	chr6	1930337	-	METTL24	chr6	110644075	-
intron-5UTR	ENST00000467288	ENST00000490043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	GMDS	chr6	1930337	-	METTL24	chr6	110644075	-
5UTR-3UTR	ENST00000367889	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367889	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367889	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367889	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367889	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367889	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367889	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367889	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367888	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367888	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367888	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367888	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367888	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367888	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367888	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367888	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367885	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367885	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367885	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367885	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367885	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367885	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367885	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367885	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367884	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367884	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367884	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-3UTR	ENST00000367884	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367884	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367884	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367884	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
5UTR-intron	ENST00000367884	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367883	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367883	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367883	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367883	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367883	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367883	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367883	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367883	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367886	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367886	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367886	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000367886	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367886	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367886	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367886	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000367886	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000461759	ENST00000488819		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000461759	ENST00000444090		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000461759	ENST00000441662		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3UTR	ENST00000461759	ENST00000368043		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000461759	ENST00000368042		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000461759	ENST00000458602		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000461759	ENST00000458104		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-intron	ENST00000461759	ENST00000359331		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	MGST3	chr1	165600530	+	SLAMF7	chr1	160717984	+
intron-3CDS	ENST00000408388	ENST00000548567		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	PVT1	chr8	128903244	+	CS	chr12	56669979	-
intron-3CDS	ENST00000408388	ENST00000351328		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	PVT1	chr8	128903244	+	CS	chr12	56669979	-
intron-3CDS	ENST00000408388	ENST00000542324		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	PVT1	chr8	128903244	+	CS	chr12	56669979	-
intron-3CDS	ENST00000408388	ENST00000267023		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	PVT1	chr8	128806980	+	NABP2	chr12	56619157	+
intron-3CDS	ENST00000408388	ENST00000380198		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	PVT1	chr8	128806980	+	NABP2	chr12	56619157	+
intron-3CDS	ENST00000408388	ENST00000341463		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	PVT1	chr8	128806980	+	NABP2	chr12	56619157	+
Frame-shit	ENST00000314349	ENST00000333625		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	TIMM50	chr19	39973796	+	IFNL1	chr19	39787445	+
Frame-shit	ENST00000607714	ENST00000333625		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	TIMM50	chr19	39973796	+	IFNL1	chr19	39787445	+
intron-3CDS	ENST00000599794	ENST00000333625		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	TIMM50	chr19	39973796	+	IFNL1	chr19	39787445	+
In-frame	ENST00000544017	ENST00000333625		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	TIMM50	chr19	39973796	+	IFNL1	chr19	39787445	+
intron-3CDS	ENST00000600878	ENST00000333625		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	TIMM50	chr19	39973796	+	IFNL1	chr19	39787445	+
In-frame	ENST00000298139	ENST00000487273		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	WRN	chr8	30982516	+	ADAM9	chr8	38871484	+
In-frame	ENST00000298139	ENST00000466936		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	WRN	chr8	30982516	+	ADAM9	chr8	38871484	+
Frame-shit	ENST00000298139	ENST00000481513		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	WRN	chr8	30982516	+	ADAM9	chr8	38871484	+
5CDS-intron	ENST00000298139	ENST00000484143		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	WRN	chr8	30982516	+	ADAM9	chr8	38871484	+
Frame-shit	ENST00000207870	ENST00000446845		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
Frame-shit	ENST00000207870	ENST00000311806		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
5CDS-intron	ENST00000207870	ENST00000492714		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
5UTR-3CDS	ENST00000542835	ENST00000446845		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
5UTR-3CDS	ENST00000542835	ENST00000311806		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
5UTR-intron	ENST00000542835	ENST00000492714		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
Frame-shit	ENST00000427323	ENST00000446845		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
Frame-shit	ENST00000427323	ENST00000311806		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
5CDS-intron	ENST00000427323	ENST00000492714		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
intron-3CDS	ENST00000472721	ENST00000446845		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
intron-3CDS	ENST00000472721	ENST00000311806		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
intron-intron	ENST00000472721	ENST00000492714		TCGA	LD	BRCA	TCGA-B6-A0I1-01A	XYLB	chr3	38390123	+	OXSR1	chr3	38284234	+
In-frame	ENST00000608999	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
In-frame	ENST00000336894	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
In-frame	ENST00000480184	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
In-frame	ENST00000356764	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
intron-3CDS	ENST00000290419	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
intron-3CDS	ENST00000391959	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
intron-3CDS	ENST00000367270	ENST00000430297		TCGA	LD	BRCA	TCGA-B6-A0I2-01A	PPP1R12B	chr1	202318270	+	FAM134A	chr2	220046735	+
In-frame	ENST00000262061	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000262061	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000262061	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000262061	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-3CDS	ENST00000549043	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-intron	ENST00000549043	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-intron	ENST00000549043	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-intron	ENST00000549043	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
In-frame	ENST00000552218	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000552218	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000552218	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000552218	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
In-frame	ENST00000553231	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000553231	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000553231	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000553231	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
In-frame	ENST00000552362	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000552362	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000552362	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000552362	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
In-frame	ENST00000455864	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000455864	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000455864	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000455864	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-3CDS	ENST00000416254	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-intron	ENST00000416254	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-intron	ENST00000416254	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5UTR-intron	ENST00000416254	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
In-frame	ENST00000549116	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000549116	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000549116	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000549116	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
In-frame	ENST00000551779	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000551779	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000551779	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000551779	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-3CDS	ENST00000548281	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-intron	ENST00000548281	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-intron	ENST00000548281	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-intron	ENST00000548281	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-3CDS	ENST00000548753	ENST00000303406		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-intron	ENST00000548753	ENST00000507650		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-intron	ENST00000548753	ENST00000609810		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
intron-intron	ENST00000548753	ENST00000430889		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	COPZ1	chr12	54718965	+	HOXC4	chr12	54448044	+
5CDS-intron	ENST00000302174	ENST00000395002		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000302174	ENST00000264344		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000302174	ENST00000503556		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000302174	ENST00000511976		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000302174	ENST00000508369		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000302174	ENST00000513837		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-5UTR	ENST00000302174	ENST00000502459		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-5UTR	ENST00000302174	ENST00000509094		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-5UTR	ENST00000302174	ENST00000515600		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000473942	ENST00000395002		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000473942	ENST00000264344		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000473942	ENST00000503556		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000473942	ENST00000511976		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000473942	ENST00000508369		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-intron	ENST00000473942	ENST00000513837		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-5UTR	ENST00000473942	ENST00000502459		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-5UTR	ENST00000473942	ENST00000509094		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
5CDS-5UTR	ENST00000473942	ENST00000515600		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-intron	ENST00000515371	ENST00000395002		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-intron	ENST00000515371	ENST00000264344		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-intron	ENST00000515371	ENST00000503556		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-intron	ENST00000515371	ENST00000511976		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-intron	ENST00000515371	ENST00000508369		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-intron	ENST00000515371	ENST00000513837		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-5UTR	ENST00000515371	ENST00000502459		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-5UTR	ENST00000515371	ENST00000509094		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
3UTR-5UTR	ENST00000515371	ENST00000515600		TCGA	LD	BRCA	TCGA-B6-A0I6-01A	NUDT9	chr4	88370405	+	FAM13A	chr4	89912301	-
Frame-shit	ENST00000359926	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000359926	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
5CDS-intron	ENST00000359926	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000371015	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000371015	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
5CDS-intron	ENST00000371015	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000395639	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000395639	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
5CDS-intron	ENST00000395639	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
intron-3CDS	ENST00000541461	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
intron-3CDS	ENST00000541461	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
intron-intron	ENST00000541461	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000355648	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000355648	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
5CDS-intron	ENST00000355648	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000395636	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000395636	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
5CDS-intron	ENST00000395636	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000361300	ENST00000357552		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000361300	ENST00000371001		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
5CDS-intron	ENST00000361300	ENST00000476314		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	PHACTR3	chr20	58422766	+	SYCP2	chr20	58442830	-
Frame-shit	ENST00000272348	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000272348	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000272348	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000272348	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5UTR-3CDS	ENST00000429728	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5UTR-3CDS	ENST00000429728	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5UTR-intron	ENST00000429728	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5UTR-intron	ENST00000429728	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
In-frame	ENST00000482975	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000482975	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000482975	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000482975	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000438261	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
In-frame	ENST00000438261	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000438261	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000438261	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
In-frame	ENST00000449935	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000449935	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000449935	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000449935	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000413456	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000413456	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000413456	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000413456	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000454893	ENST00000505044		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000454893	ENST00000433351		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000454893	ENST00000264441		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
5CDS-intron	ENST00000454893	ENST00000545138		TCGA	LD	BRCA	TCGA-B6-A0I8-01A	SNRPG	chr2	70515200	-	PCYOX1	chr2	70503866	+
Frame-shit	ENST00000253577	ENST00000336325		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000253577	ENST00000360596		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000253577	ENST00000253382		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5CDS-intron	ENST00000253577	ENST00000476922		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000339447	ENST00000336325		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000339447	ENST00000360596		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000339447	ENST00000253382		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5CDS-intron	ENST00000339447	ENST00000476922		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000373394	ENST00000336325		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000373394	ENST00000360596		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000373394	ENST00000253382		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5CDS-intron	ENST00000373394	ENST00000476922		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5UTR-3CDS	ENST00000534570	ENST00000336325		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5UTR-3CDS	ENST00000534570	ENST00000360596		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5UTR-3CDS	ENST00000534570	ENST00000253382		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5UTR-intron	ENST00000534570	ENST00000476922		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ABCB7	chrX	74290200	-	ACSS2	chr20	33500899	+
5CDS-5UTR	ENST00000373996	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000373996	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000373996	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000313400	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000313400	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000313400	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000361209	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000361209	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000361209	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5UTR-5UTR	ENST00000361477	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5UTR-5UTR	ENST00000361477	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
5UTR-5UTR	ENST00000361477	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000288520	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000288520	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000288520	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000341734	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000341734	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000341734	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000358637	ENST00000394246		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000358637	ENST00000269582		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000358637	ENST00000581428		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ASTN2	chr9	120053605	-	PNMT	chr17	37825882	+
Frame-shit	ENST00000381786	ENST00000349714		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000359226		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000374384		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000374380		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000374385		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000374377		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000397556		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-intron	ENST00000381786	ENST00000407996		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000381786	ENST00000540457		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000381786	ENST00000542501		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000381786	ENST00000397554		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
5CDS-5UTR	ENST00000381786	ENST00000491125		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	C2orf48	chr2	10282081	+	UQCC1	chr20	33935075	-
intron-3CDS	ENST00000311172	ENST00000415641		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FCHSD2	chr11	72851076	-	NBPF4	chr1	108777033	-
In-frame	ENST00000409314	ENST00000415641		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FCHSD2	chr11	72851076	-	NBPF4	chr1	108777033	-
In-frame	ENST00000409418	ENST00000415641		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FCHSD2	chr11	72851076	-	NBPF4	chr1	108777033	-
5UTR-3CDS	ENST00000458644	ENST00000415641		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FCHSD2	chr11	72851076	-	NBPF4	chr1	108777033	-
5UTR-3CDS	ENST00000409853	ENST00000415641		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FCHSD2	chr11	72851076	-	NBPF4	chr1	108777033	-
intron-3CDS	ENST00000409263	ENST00000415641		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FCHSD2	chr11	72851076	-	NBPF4	chr1	108777033	-
5CDS-3UTR	ENST00000495708	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000495708	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000495708	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000495708	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000495708	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000495708	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000495708	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000495708	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374710	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374710	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374710	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374710	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374710	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374710	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000374710	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000374710	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000481272	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000481272	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000481272	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000481272	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000481272	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000481272	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000481272	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000481272	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000484973	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000484973	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000484973	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000484973	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000484973	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000484973	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000484973	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000484973	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-3UTR	ENST00000539376	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-3UTR	ENST00000539376	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-3UTR	ENST00000539376	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-3UTR	ENST00000539376	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-3UTR	ENST00000539376	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-3UTR	ENST00000539376	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-intron	ENST00000539376	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5UTR-intron	ENST00000539376	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000394926	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000394926	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000394926	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000394926	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000394926	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000394926	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000394926	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000394926	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000480279	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000480279	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000480279	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000480279	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000480279	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000480279	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-intron	ENST00000480279	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-intron	ENST00000480279	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000374707	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000374707	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000374707	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000374707	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000374707	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-3UTR	ENST00000374707	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-intron	ENST00000374707	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
intron-intron	ENST00000374707	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374716	ENST00000485925		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374716	ENST00000371916		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374716	ENST00000371929		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374716	ENST00000355699		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374716	ENST00000356589		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-3UTR	ENST00000374716	ENST00000536611		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000374716	ENST00000371911		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
5CDS-intron	ENST00000374716	ENST00000371910		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	FSD1L	chr9	108210516	+	ADAMTS13	chr9	136313720	+
In-frame	ENST00000440884	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000440884	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000416682	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000416682	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000429436	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000429436	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000303622	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000303622	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000216288	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000216288	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000553942	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000553942	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000335102	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000335102	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
intron-3CDS	ENST00000561071	ENST00000280082		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
intron-3CDS	ENST00000561071	ENST00000556784		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MARK3	chr14	103852417	+	MIA2	chr14	39716115	+
In-frame	ENST00000394287	ENST00000431231		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
In-frame	ENST00000394287	ENST00000437668		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000394287	ENST00000582409		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000394287	ENST00000443378		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
In-frame	ENST00000300651	ENST00000431231		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
In-frame	ENST00000300651	ENST00000437668		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000300651	ENST00000582409		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000300651	ENST00000443378		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	MED1	chr17	37604051	-	ARHGAP23	chr17	36614346	+
Frame-shit	ENST00000281038	ENST00000281031		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
Frame-shit	ENST00000281038	ENST00000527806		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5CDS-intron	ENST00000281038	ENST00000534029		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5CDS-intron	ENST00000281038	ENST00000525085		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5CDS-intron	ENST00000281038	ENST00000528164		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5UTR-3CDS	ENST00000528850	ENST00000281031		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5UTR-3CDS	ENST00000528850	ENST00000527806		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5UTR-intron	ENST00000528850	ENST00000534029		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5UTR-intron	ENST00000528850	ENST00000525085		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
5UTR-intron	ENST00000528850	ENST00000528164		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NARS2	chr11	78270585	-	NDUFC2	chr11	77784187	-
Frame-shit	ENST00000374767	ENST00000334943		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NIPSNAP3A	chr9	107510133	+	TMEFF1	chr9	103310026	+
Frame-shit	ENST00000374767	ENST00000374879		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NIPSNAP3A	chr9	107510133	+	TMEFF1	chr9	103310026	+
intron-3CDS	ENST00000471001	ENST00000334943		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NIPSNAP3A	chr9	107510133	+	TMEFF1	chr9	103310026	+
intron-3CDS	ENST00000471001	ENST00000374879		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	NIPSNAP3A	chr9	107510133	+	TMEFF1	chr9	103310026	+
Frame-shit	ENST00000304046	ENST00000348931		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000304046	ENST00000584588		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000304046	ENST00000377940		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000579695	ENST00000348931		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000579695	ENST00000584588		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000579695	ENST00000377940		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000394169	ENST00000348931		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000394169	ENST00000584588		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000394169	ENST00000377940		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000584220	ENST00000348931		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000584220	ENST00000584588		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000584220	ENST00000377940		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000582052	ENST00000348931		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000582052	ENST00000584588		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000582052	ENST00000377940		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	ORMDL3	chr17	38080283	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000341744	ENST00000374408		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PMEPA1	chr20	56284530	-	FAM83C	chr20	33876761	-
intron-3CDS	ENST00000395816	ENST00000374408		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PMEPA1	chr20	56284530	-	FAM83C	chr20	33876761	-
intron-3CDS	ENST00000347215	ENST00000374408		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PMEPA1	chr20	56284530	-	FAM83C	chr20	33876761	-
intron-3CDS	ENST00000265626	ENST00000374408		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PMEPA1	chr20	56284530	-	FAM83C	chr20	33876761	-
intron-3CDS	ENST00000395814	ENST00000374408		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PMEPA1	chr20	56284530	-	FAM83C	chr20	33876761	-
intron-3CDS	ENST00000472841	ENST00000374408		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PMEPA1	chr20	56284530	-	FAM83C	chr20	33876761	-
Frame-shit	ENST00000253925	ENST00000407010		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
Frame-shit	ENST00000253925	ENST00000399310		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
Frame-shit	ENST00000253925	ENST00000479493		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
Frame-shit	ENST00000389547	ENST00000407010		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
Frame-shit	ENST00000389547	ENST00000399310		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
Frame-shit	ENST00000389547	ENST00000479493		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
intron-3CDS	ENST00000530548	ENST00000407010		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
intron-3CDS	ENST00000530548	ENST00000399310		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
intron-3CDS	ENST00000530548	ENST00000479493		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	PPFIA1	chr11	70201917	+	ISPD	chr7	16341091	-
In-frame	ENST00000335670	ENST00000303329		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
In-frame	ENST00000335670	ENST00000533983		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
In-frame	ENST00000335670	ENST00000527771		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
5CDS-intron	ENST00000335670	ENST00000531595		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000309157	ENST00000303329		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000309157	ENST00000533983		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000309157	ENST00000527771		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-intron	ENST00000309157	ENST00000531595		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000261523	ENST00000303329		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000261523	ENST00000533983		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000261523	ENST00000527771		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-intron	ENST00000261523	ENST00000531595		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000449337	ENST00000303329		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000449337	ENST00000533983		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000449337	ENST00000527771		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-intron	ENST00000449337	ENST00000531595		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000560004	ENST00000303329		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000560004	ENST00000533983		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-3CDS	ENST00000560004	ENST00000527771		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
intron-intron	ENST00000560004	ENST00000531595		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RORA	chr15	61521252	-	ARNT2	chr15	80885941	+
5CDS-5UTR	ENST00000261991	ENST00000555004		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
5CDS-3UTR	ENST00000261991	ENST00000556728		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
5CDS-intron	ENST00000261991	ENST00000421193		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
intron-5UTR	ENST00000536315	ENST00000555004		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
intron-3UTR	ENST00000536315	ENST00000556728		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
intron-intron	ENST00000536315	ENST00000421193		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
5CDS-5UTR	ENST00000418736	ENST00000555004		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
5CDS-3UTR	ENST00000418736	ENST00000556728		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
5CDS-intron	ENST00000418736	ENST00000421193		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
intron-5UTR	ENST00000556304	ENST00000555004		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
intron-3UTR	ENST00000556304	ENST00000556728		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
intron-intron	ENST00000556304	ENST00000421193		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	RPS6KA5	chr14	91526676	-	C14orf132	chr14	96552848	+
In-frame	ENST00000428135	ENST00000600324		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
In-frame	ENST00000428135	ENST00000594605		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
5CDS-intron	ENST00000428135	ENST00000597593		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
In-frame	ENST00000409389	ENST00000600324		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
In-frame	ENST00000409389	ENST00000594605		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
5CDS-intron	ENST00000409389	ENST00000597593		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
In-frame	ENST00000409604	ENST00000600324		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
In-frame	ENST00000409604	ENST00000594605		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
5CDS-intron	ENST00000409604	ENST00000597593		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
intron-3CDS	ENST00000496855	ENST00000600324		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
intron-3CDS	ENST00000496855	ENST00000594605		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
intron-intron	ENST00000496855	ENST00000597593		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	SNX13	chr7	17979907	-	STAP2	chr19	4334041	-
5UTR-3CDS	ENST00000345057	ENST00000380993		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-3CDS	ENST00000345057	ENST00000396577		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000345057	ENST00000330289		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000345057	ENST00000558405		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000345057	ENST00000561031		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000345057	ENST00000559723		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
intron-3CDS	ENST00000486556	ENST00000380993		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
intron-3CDS	ENST00000486556	ENST00000396577		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000486556	ENST00000330289		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000486556	ENST00000558405		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000486556	ENST00000561031		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000486556	ENST00000559723		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-3CDS	ENST00000566104	ENST00000380993		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-3CDS	ENST00000566104	ENST00000396577		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000566104	ENST00000330289		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000566104	ENST00000558405		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000566104	ENST00000561031		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
5UTR-intron	ENST00000566104	ENST00000559723		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRADD	chr16	67193741	-	SLC12A1	chr15	48548008	+
In-frame	ENST00000316881	ENST00000416426		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000316881	ENST00000284073		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000316881	ENST00000322684		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000316881	ENST00000442934		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000316881	ENST00000579180		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
5CDS-3UTR	ENST00000316881	ENST00000579505		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000573108	ENST00000416426		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000573108	ENST00000284073		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000573108	ENST00000322684		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000573108	ENST00000442934		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000573108	ENST00000579180		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
intron-3UTR	ENST00000573108	ENST00000579505		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000537230	ENST00000416426		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000537230	ENST00000284073		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000537230	ENST00000322684		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000537230	ENST00000442934		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000537230	ENST00000579180		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
5CDS-3UTR	ENST00000537230	ENST00000579505		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIM25	chr17	54972704	-	MSI2	chr17	55674229	+
In-frame	ENST00000267622	ENST00000281081		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIP11	chr14	92439061	-	NUBPL	chr14	32295835	+
In-frame	ENST00000267622	ENST00000536705		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIP11	chr14	92439061	-	NUBPL	chr14	32295835	+
5CDS-3UTR	ENST00000267622	ENST00000418681		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIP11	chr14	92439061	-	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000555105	ENST00000281081		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIP11	chr14	92439061	-	NUBPL	chr14	32295835	+
intron-3CDS	ENST00000555105	ENST00000536705		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIP11	chr14	92439061	-	NUBPL	chr14	32295835	+
intron-3UTR	ENST00000555105	ENST00000418681		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	TRIP11	chr14	92439061	-	NUBPL	chr14	32295835	+
Frame-shit	ENST00000299138	ENST00000557021		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
Frame-shit	ENST00000299138	ENST00000371650		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
Frame-shit	ENST00000299138	ENST00000371652		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
Frame-shit	ENST00000299138	ENST00000371656		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000568642	ENST00000557021		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000568642	ENST00000371650		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000568642	ENST00000371652		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000568642	ENST00000371656		TCGA	LD	BRCA	TCGA-B6-A0I9-01A	VPS35	chr16	46705617	-	TMEM189	chr20	48747484	-
5CDS-5UTR	ENST00000262077	ENST00000410107		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000262077	ENST00000397423		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000262077	ENST00000495262		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000262077	ENST00000379597		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000262077	ENST00000316170		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000262077	ENST00000265012		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-5UTR	ENST00000537253	ENST00000410107		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000537253	ENST00000397423		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000537253	ENST00000495262		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000537253	ENST00000379597		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000537253	ENST00000316170		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000537253	ENST00000265012		TCGA	LD	BRCA	TCGA-B6-A0IA-01A	NUP153	chr6	17688627	-	GCNT2	chr6	10509320	+
Frame-shit	ENST00000345807	ENST00000394817		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000345807	ENST00000265195		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000345807	ENST00000509534		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
5CDS-5UTR	ENST00000345807	ENST00000515008		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000310418	ENST00000394817		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000310418	ENST00000265195		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000310418	ENST00000509534		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
5CDS-5UTR	ENST00000310418	ENST00000515008		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
intron-3CDS	ENST00000509319	ENST00000394817		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
intron-3CDS	ENST00000509319	ENST00000265195		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
intron-3CDS	ENST00000509319	ENST00000509534		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
intron-5UTR	ENST00000509319	ENST00000515008		TCGA	LD	BRCA	TCGA-B6-A0IE-01A	CLTB	chr5	175837258	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000394126	ENST00000556440		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
Frame-shit	ENST00000394126	ENST00000553412		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000394126	ENST00000581056		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000394126	ENST00000577476		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
In-frame	ENST00000356271	ENST00000556440		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
In-frame	ENST00000356271	ENST00000553412		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000356271	ENST00000581056		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000356271	ENST00000577476		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
In-frame	ENST00000394128	ENST00000556440		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
In-frame	ENST00000394128	ENST00000553412		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000394128	ENST00000581056		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000394128	ENST00000577476		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
Frame-shit	ENST00000394127	ENST00000556440		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
Frame-shit	ENST00000394127	ENST00000553412		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000394127	ENST00000581056		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000394127	ENST00000577476		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
Frame-shit	ENST00000501516	ENST00000556440		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
Frame-shit	ENST00000501516	ENST00000553412		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000501516	ENST00000581056		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5CDS-intron	ENST00000501516	ENST00000577476		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5UTR-3CDS	ENST00000479829	ENST00000556440		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5UTR-3CDS	ENST00000479829	ENST00000553412		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5UTR-intron	ENST00000479829	ENST00000581056		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
5UTR-intron	ENST00000479829	ENST00000577476		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	MED24	chr17	38209551	-	CEP95	chr17	62517520	+
Frame-shit	ENST00000257836	ENST00000456989		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	PRRG4	chr11	32852178	+	RAPGEFL1	chr17	38345118	+
Frame-shit	ENST00000257836	ENST00000544503		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	PRRG4	chr11	32852178	+	RAPGEFL1	chr17	38345118	+
Frame-shit	ENST00000257836	ENST00000264644		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	PRRG4	chr11	32852178	+	RAPGEFL1	chr17	38345118	+
5CDS-3UTR	ENST00000257836	ENST00000540388		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	PRRG4	chr11	32852178	+	RAPGEFL1	chr17	38345118	+
5CDS-3UTR	ENST00000257836	ENST00000436615		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	PRRG4	chr11	32852178	+	RAPGEFL1	chr17	38345118	+
3UTR-3CDS	ENST00000546961	ENST00000355086		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
3UTR-3CDS	ENST00000546961	ENST00000357825		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
3UTR-5UTR	ENST00000546961	ENST00000543397		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000550891	ENST00000355086		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000550891	ENST00000357825		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000550891	ENST00000543397		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000354534	ENST00000355086		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000354534	ENST00000357825		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000354534	ENST00000543397		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000545061	ENST00000355086		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000545061	ENST00000357825		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000545061	ENST00000543397		TCGA	LD	BRCA	TCGA-B6-A0IG-01A	SCN8A	chr12	51984457	+	SRGAP1	chr12	64377727	+
5CDS-intron	ENST00000376980	ENST00000396113		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
5CDS-intron	ENST00000376980	ENST00000286687		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
5CDS-intron	ENST00000376980	ENST00000396111		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
5CDS-intron	ENST00000376980	ENST00000521840		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
5CDS-intron	ENST00000376980	ENST00000542894		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
5CDS-intron	ENST00000376980	ENST00000396124		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000376946	ENST00000396113		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000376946	ENST00000286687		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000376946	ENST00000396111		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000376946	ENST00000521840		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000376946	ENST00000542894		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000376946	ENST00000396124		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000483085	ENST00000396113		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000483085	ENST00000286687		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000483085	ENST00000396111		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000483085	ENST00000521840		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000483085	ENST00000542894		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
intron-intron	ENST00000483085	ENST00000396124		TCGA	LD	BRCA	TCGA-B6-A0IH-01A	DNAJC1	chr10	22171211	-	NDUFAF6	chr8	96128498	+
Frame-shit	ENST00000414350	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000414350	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000414350	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
Frame-shit	ENST00000343632	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000343632	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000343632	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
Frame-shit	ENST00000381756	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000381756	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000381756	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
Frame-shit	ENST00000405147	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000405147	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000405147	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
Frame-shit	ENST00000325180	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000325180	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000325180	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
Frame-shit	ENST00000337437	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000337437	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
5CDS-intron	ENST00000337437	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
intron-3CDS	ENST00000406772	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
intron-intron	ENST00000406772	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
intron-intron	ENST00000406772	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
intron-3CDS	ENST00000488672	ENST00000406386		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
intron-intron	ENST00000488672	ENST00000407319		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
intron-intron	ENST00000488672	ENST00000403663		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GGA1	chr22	38004910	+	TRIOBP	chr22	38161677	+
3UTR-3CDS	ENST00000396613	ENST00000377966		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
3UTR-intron	ENST00000396613	ENST00000479053		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
intron-3CDS	ENST00000377959	ENST00000377966		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
intron-intron	ENST00000377959	ENST00000479053		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
Frame-shit	ENST00000377960	ENST00000377966		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
5CDS-intron	ENST00000377960	ENST00000479053		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
3UTR-3CDS	ENST00000474050	ENST00000377966		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
3UTR-intron	ENST00000474050	ENST00000479053		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	GLIPR2	chr9	36150946	+	RECK	chr9	36116982	+
Frame-shit	ENST00000361371	ENST00000493196		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	LTN1	chr21	30365085	-	RWDD2B	chr21	30380942	-
5CDS-5UTR	ENST00000361371	ENST00000486719		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	LTN1	chr21	30365085	-	RWDD2B	chr21	30380942	-
Frame-shit	ENST00000389194	ENST00000493196		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	LTN1	chr21	30365085	-	RWDD2B	chr21	30380942	-
5CDS-5UTR	ENST00000389194	ENST00000486719		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	LTN1	chr21	30365085	-	RWDD2B	chr21	30380942	-
Frame-shit	ENST00000389195	ENST00000493196		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	LTN1	chr21	30365085	-	RWDD2B	chr21	30380942	-
5CDS-5UTR	ENST00000389195	ENST00000486719		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	LTN1	chr21	30365085	-	RWDD2B	chr21	30380942	-
5UTR-3CDS	ENST00000341184	ENST00000265293		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MGAT3	chr22	39853562	+	WWC1	chr5	167855038	+
5UTR-3CDS	ENST00000341184	ENST00000521089		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MGAT3	chr22	39853562	+	WWC1	chr5	167855038	+
5UTR-intron	ENST00000341184	ENST00000522140		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MGAT3	chr22	39853562	+	WWC1	chr5	167855038	+
5UTR-5UTR	ENST00000216181	ENST00000427410		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000447388		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000425457		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000456393		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000372654		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000372653		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000372652		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000372651		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000440226		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-5UTR	ENST00000216181	ENST00000308733		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
5UTR-intron	ENST00000216181	ENST00000483091		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000427410		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000447388		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000425457		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000456393		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000372654		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000372653		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000372652		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000372651		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000440226		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475726	ENST00000308733		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-intron	ENST00000475726	ENST00000483091		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000427410		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000447388		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000425457		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000456393		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000372654		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000372653		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000372652		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000372651		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000440226		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-5UTR	ENST00000401701	ENST00000308733		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-intron	ENST00000401701	ENST00000483091		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	MYH9	chr22	36783852	-	NFYC	chr1	41204508	+
intron-3CDS	ENST00000404535	ENST00000311852		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3UTR	ENST00000404535	ENST00000548162		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
3UTR-3CDS	ENST00000288014	ENST00000311852		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
3UTR-3UTR	ENST00000288014	ENST00000548162		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3CDS	ENST00000556015	ENST00000311852		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3UTR	ENST00000556015	ENST00000548162		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3CDS	ENST00000554970	ENST00000311852		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3UTR	ENST00000554970	ENST00000548162		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3CDS	ENST00000554789	ENST00000311852		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
intron-3UTR	ENST00000554789	ENST00000548162		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	THTPA	chr14	24029317	+	MMP14	chr14	23313589	+
Frame-shit	ENST00000311922	ENST00000287437		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000311922	ENST00000522563		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000311922	ENST00000517315		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000311922	ENST00000521460		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000520847	ENST00000287437		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000520847	ENST00000522563		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000520847	ENST00000517315		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-intron	ENST00000520847	ENST00000521460		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521778	ENST00000287437		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521778	ENST00000522563		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521778	ENST00000517315		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-intron	ENST00000521778	ENST00000521460		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000519576	ENST00000287437		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000519576	ENST00000522563		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000519576	ENST00000517315		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
intron-intron	ENST00000519576	ENST00000521460		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	TRIB1	chr8	126443504	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000360647	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000360647	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000360647	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000360647	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000360647	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000360647	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000360647	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000360647	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000468369	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000468369	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000468369	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000468369	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-intron	ENST00000468369	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-intron	ENST00000468369	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3UTR	ENST00000468369	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3UTR	ENST00000468369	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
In-frame	ENST00000484491	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
In-frame	ENST00000484491	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
In-frame	ENST00000484491	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
In-frame	ENST00000484491	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000484491	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000484491	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000484491	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000484491	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000544464	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000544464	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000544464	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3CDS	ENST00000544464	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-intron	ENST00000544464	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-intron	ENST00000544464	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3UTR	ENST00000544464	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
intron-3UTR	ENST00000544464	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000492394	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000492394	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000492394	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000492394	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000492394	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000492394	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000492394	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000492394	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000485866	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000485866	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000485866	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
Frame-shit	ENST00000485866	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000485866	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-intron	ENST00000485866	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000485866	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5CDS-3UTR	ENST00000485866	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-3CDS	ENST00000497929	ENST00000375999		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-3CDS	ENST00000497929	ENST00000417793		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-3CDS	ENST00000497929	ENST00000358897		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-3CDS	ENST00000497929	ENST00000375998		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-intron	ENST00000497929	ENST00000375995		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-intron	ENST00000497929	ENST00000401090		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-3UTR	ENST00000497929	ENST00000471347		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
5UTR-3UTR	ENST00000497929	ENST00000314740		TCGA	LD	BRCA	TCGA-B6-A0IJ-01A	ZNF148	chr3	125006947	-	FHAD1	chr1	15689138	+
In-frame	ENST00000356136	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
In-frame	ENST00000356136	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
5CDS-intron	ENST00000356136	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000528420	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000528420	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000528420	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000533454	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000533454	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000533454	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000531818	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000531818	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000531818	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000532130	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000532130	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000532130	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000539288	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000539288	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000539288	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000525872	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000525872	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000525872	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000538870	ENST00000228027		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000538870	ENST00000376262		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000538870	ENST00000605608		TCGA	LD	BRCA	TCGA-B6-A0IK-01A	UVRAG	chr11	75526569	+	DGAT2	chr11	75507373	+
5CDS-3UTR	ENST00000083182	ENST00000577702		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000083182	ENST00000310827		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000083182	ENST00000431926		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000083182	ENST00000415273		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000592995	ENST00000577702		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000592995	ENST00000310827		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000592995	ENST00000431926		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
intron-intron	ENST00000592995	ENST00000415273		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	APPBP2	chr17	58603155	-	DCAF7	chr17	61655831	+
In-frame	ENST00000335272	ENST00000380817		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
In-frame	ENST00000335272	ENST00000348911		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
In-frame	ENST00000335272	ENST00000390679		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
5CDS-intron	ENST00000335272	ENST00000476293		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
Frame-shit	ENST00000320996	ENST00000380817		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
Frame-shit	ENST00000320996	ENST00000348911		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
Frame-shit	ENST00000320996	ENST00000390679		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
5CDS-intron	ENST00000320996	ENST00000476293		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
In-frame	ENST00000455418	ENST00000380817		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
In-frame	ENST00000455418	ENST00000348911		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
In-frame	ENST00000455418	ENST00000390679		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
5CDS-intron	ENST00000455418	ENST00000476293		TCGA	LD	BRCA	TCGA-B6-A0IN-01A	PITPNB	chr22	28306952	-	SBF1	chr22	50885882	-
In-frame	ENST00000310298	ENST00000328649		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PDE8A	chr15	85525579	+	CIB1	chr15	90776935	-
intron-3CDS	ENST00000557957	ENST00000328649		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PDE8A	chr15	85525579	+	CIB1	chr15	90776935	-
In-frame	ENST00000394553	ENST00000328649		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PDE8A	chr15	85525579	+	CIB1	chr15	90776935	-
In-frame	ENST00000339708	ENST00000328649		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PDE8A	chr15	85525579	+	CIB1	chr15	90776935	-
intron-3CDS	ENST00000557819	ENST00000328649		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PDE8A	chr15	85525579	+	CIB1	chr15	90776935	-
5CDS-intron	ENST00000319622	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000319622	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000319622	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000319622	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000319622	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000319622	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565184	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565184	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565184	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565184	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565184	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565184	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000389093	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000389093	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000389093	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000389093	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000389093	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000389093	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000335181	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000335181	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000335181	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000335181	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000335181	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000335181	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000568883	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000568883	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000568883	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000568883	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000568883	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000568883	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000449901	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000449901	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000449901	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000449901	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000449901	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
intron-intron	ENST00000449901	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565154	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565154	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565154	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565154	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565154	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000565154	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000568459	ENST00000543482		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000568459	ENST00000331706		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000568459	ENST00000451018		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000568459	ENST00000357742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000568459	ENST00000557742		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5CDS-intron	ENST00000568459	ENST00000449432		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PKM	chr15	72509750	-	MCTP2	chr15	94942190	+
5UTR-3CDS	ENST00000355765	ENST00000540871		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PRPF39	chr14	45553452	+	PSMA6	chr14	35777200	+
5UTR-3CDS	ENST00000355765	ENST00000261479		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PRPF39	chr14	45553452	+	PSMA6	chr14	35777200	+
5UTR-3CDS	ENST00000355765	ENST00000553809		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PRPF39	chr14	45553452	+	PSMA6	chr14	35777200	+
5UTR-5UTR	ENST00000355765	ENST00000555764		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PRPF39	chr14	45553452	+	PSMA6	chr14	35777200	+
5UTR-5UTR	ENST00000355765	ENST00000556506		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	PRPF39	chr14	45553452	+	PSMA6	chr14	35777200	+
5UTR-3CDS	ENST00000474820	ENST00000409728		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-3CDS	ENST00000474820	ENST00000409043		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-3CDS	ENST00000474820	ENST00000409195		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-3CDS	ENST00000474820	ENST00000409756		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-3CDS	ENST00000474820	ENST00000420519		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-3CDS	ENST00000474820	ENST00000295237		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-5UTR	ENST00000474820	ENST00000409273		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5UTR-5UTR	ENST00000474820	ENST00000409605		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000348849	ENST00000409728		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000348849	ENST00000409043		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000348849	ENST00000409195		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000348849	ENST00000409756		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000348849	ENST00000420519		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000348849	ENST00000295237		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000348849	ENST00000409273		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000348849	ENST00000409605		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409075	ENST00000409728		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409075	ENST00000409043		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409075	ENST00000409195		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409075	ENST00000409756		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409075	ENST00000420519		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409075	ENST00000295237		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000409075	ENST00000409273		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000409075	ENST00000409605		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409289	ENST00000409728		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409289	ENST00000409043		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409289	ENST00000409195		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409289	ENST00000409756		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409289	ENST00000420519		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409289	ENST00000295237		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000409289	ENST00000409273		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000409289	ENST00000409605		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000392753	ENST00000409728		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000392753	ENST00000409043		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000392753	ENST00000409195		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000392753	ENST00000409756		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000392753	ENST00000420519		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
Frame-shit	ENST00000392753	ENST00000295237		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000392753	ENST00000409273		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
5CDS-5UTR	ENST00000392753	ENST00000409605		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409972	ENST00000409728		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409972	ENST00000409043		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409972	ENST00000409195		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409972	ENST00000409756		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409972	ENST00000420519		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-3CDS	ENST00000409972	ENST00000295237		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000409972	ENST00000409273		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
intron-5UTR	ENST00000409972	ENST00000409605		TCGA	LD	BRCA	TCGA-B6-A0IO-01A	RBMS1	chr2	161349800	-	XIRP2	chr2	168067245	+
In-frame	ENST00000396024	ENST00000389467		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000396024	ENST00000446231		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000396024	ENST00000565224		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000396024	ENST00000567737		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000451270	ENST00000389467		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000451270	ENST00000446231		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000451270	ENST00000565224		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000451270	ENST00000567737		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000332680	ENST00000389467		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000332680	ENST00000446231		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000332680	ENST00000565224		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000332680	ENST00000567737		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000421017	ENST00000389467		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000421017	ENST00000446231		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000421017	ENST00000565224		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
5CDS-intron	ENST00000421017	ENST00000567737		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
intron-3CDS	ENST00000557937	ENST00000389467		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
intron-3CDS	ENST00000557937	ENST00000446231		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
intron-intron	ENST00000557937	ENST00000565224		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
intron-intron	ENST00000557937	ENST00000567737		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ANXA2	chr15	60646353	-	SMG1	chr16	18883946	-
In-frame	ENST00000267085	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000267085	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000267085	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
Frame-shit	ENST00000379843	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
Frame-shit	ENST00000379843	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
Frame-shit	ENST00000379843	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000379846	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000379846	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000379846	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
Frame-shit	ENST00000444623	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
Frame-shit	ENST00000444623	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
Frame-shit	ENST00000444623	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000453446	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000453446	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
In-frame	ENST00000453446	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-3CDS	ENST00000542115	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-3CDS	ENST00000542115	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-3CDS	ENST00000542115	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-3CDS	ENST00000491654	ENST00000443756		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-3CDS	ENST00000491654	ENST00000545132		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-3CDS	ENST00000491654	ENST00000294353		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	CSAD	chr12	53553904	-	ZYG11B	chr1	53222130	+
intron-intron	ENST00000360448	ENST00000357847		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000360448	ENST00000344492		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000360448	ENST00000275235		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-3UTR	ENST00000360448	ENST00000367598		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-3UTR	ENST00000360448	ENST00000494282		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000360448	ENST00000367596		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
5CDS-intron	ENST00000297239	ENST00000357847		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
5CDS-intron	ENST00000297239	ENST00000344492		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
5CDS-intron	ENST00000297239	ENST00000275235		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
5CDS-3UTR	ENST00000297239	ENST00000367598		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
5CDS-3UTR	ENST00000297239	ENST00000494282		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
5CDS-intron	ENST00000297239	ENST00000367596		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000367081	ENST00000357847		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000367081	ENST00000344492		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000367081	ENST00000275235		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-3UTR	ENST00000367081	ENST00000367598		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-3UTR	ENST00000367081	ENST00000494282		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000367081	ENST00000367596		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000469735	ENST00000357847		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000469735	ENST00000344492		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000469735	ENST00000275235		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-3UTR	ENST00000469735	ENST00000367598		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-3UTR	ENST00000469735	ENST00000494282		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
intron-intron	ENST00000469735	ENST00000367596		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	SYTL3	chr6	159134910	+	AIG1	chr6	143508766	+
Frame-shit	ENST00000434536	ENST00000373255		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	XPO7	chr8	21777299	+	H2AFY2	chr10	71849816	+
Frame-shit	ENST00000252512	ENST00000373255		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	XPO7	chr8	21777299	+	H2AFY2	chr10	71849816	+
intron-3CDS	ENST00000518017	ENST00000373255		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	XPO7	chr8	21777299	+	H2AFY2	chr10	71849816	+
intron-3CDS	ENST00000433566	ENST00000373255		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	XPO7	chr8	21777299	+	H2AFY2	chr10	71849816	+
5CDS-5UTR	ENST00000330619	ENST00000537055		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ZNF470	chr19	57086102	+	ZNF835	chr19	57176613	-
5CDS-5UTR	ENST00000391709	ENST00000537055		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ZNF470	chr19	57086102	+	ZNF835	chr19	57176613	-
5CDS-5UTR	ENST00000601902	ENST00000537055		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ZNF470	chr19	57086102	+	ZNF835	chr19	57176613	-
intron-5UTR	ENST00000601579	ENST00000537055		TCGA	LD	BRCA	TCGA-B6-A0IQ-01A	ZNF470	chr19	57086102	+	ZNF835	chr19	57176613	-
Frame-shit	ENST00000382518	ENST00000368465		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000382518	ENST00000368463		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000382518	ENST00000539880		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000382518	ENST00000542459		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
5CDS-intron	ENST00000382518	ENST00000368460		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
5CDS-intron	ENST00000382518	ENST00000498553		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000009180	ENST00000368465		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000009180	ENST00000368463		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000009180	ENST00000539880		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
Frame-shit	ENST00000009180	ENST00000542459		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
5CDS-intron	ENST00000009180	ENST00000368460		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
5CDS-intron	ENST00000009180	ENST00000498553		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000382515	ENST00000368465		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000382515	ENST00000368463		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000382515	ENST00000539880		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000382515	ENST00000542459		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-intron	ENST00000382515	ENST00000368460		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-intron	ENST00000382515	ENST00000498553		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000481267	ENST00000368465		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000481267	ENST00000368463		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000481267	ENST00000539880		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-3CDS	ENST00000481267	ENST00000542459		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-intron	ENST00000481267	ENST00000368460		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
intron-intron	ENST00000481267	ENST00000498553		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	CD9	chr12	6309731	+	PBXIP1	chr1	154917593	-
5UTR-3CDS	ENST00000281441	ENST00000281437		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
5UTR-5UTR	ENST00000281441	ENST00000526127		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
5UTR-intron	ENST00000281441	ENST00000531946		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
3UTR-3CDS	ENST00000525709	ENST00000281437		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
3UTR-5UTR	ENST00000525709	ENST00000526127		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
3UTR-intron	ENST00000525709	ENST00000531946		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
intron-3CDS	ENST00000524567	ENST00000281437		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
intron-5UTR	ENST00000524567	ENST00000526127		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
intron-intron	ENST00000524567	ENST00000531946		TCGA	LD	BRCA	TCGA-B6-A0RE-01A	TMEM45B	chr11	129685793	+	BARX2	chr11	129306646	+
5CDS-intron	ENST00000334344	ENST00000332149		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000334344	ENST00000398585		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000334344	ENST00000458356		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000334344	ENST00000497881		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000422737	ENST00000332149		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000422737	ENST00000398585		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000422737	ENST00000458356		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000422737	ENST00000497881		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
3UTR-intron	ENST00000479608	ENST00000332149		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
3UTR-intron	ENST00000479608	ENST00000398585		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
3UTR-intron	ENST00000479608	ENST00000458356		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
3UTR-intron	ENST00000479608	ENST00000497881		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000444670	ENST00000332149		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000444670	ENST00000398585		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000444670	ENST00000458356		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
5CDS-intron	ENST00000444670	ENST00000497881		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
intron-intron	ENST00000457135	ENST00000332149		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
intron-intron	ENST00000457135	ENST00000398585		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
intron-intron	ENST00000457135	ENST00000458356		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
intron-intron	ENST00000457135	ENST00000497881		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ARID2	chr12	46233279	+	TMPRSS2	chr21	42902141	-
In-frame	ENST00000308664	ENST00000497547		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
5CDS-intron	ENST00000308664	ENST00000471909		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
In-frame	ENST00000395494	ENST00000497547		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
5CDS-intron	ENST00000395494	ENST00000471909		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
In-frame	ENST00000539276	ENST00000497547		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
5CDS-intron	ENST00000539276	ENST00000471909		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000550248	ENST00000497547		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
intron-intron	ENST00000550248	ENST00000471909		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000552636	ENST00000497547		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
intron-intron	ENST00000552636	ENST00000471909		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	ATP2A2	chr12	110781239	+	RRP1	chr21	45211231	+
5CDS-intron	ENST00000430627	ENST00000540235		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000430627	ENST00000393930		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000430627	ENST00000393931		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000430627	ENST00000310706		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-intron	ENST00000447079	ENST00000540235		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000447079	ENST00000393930		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000447079	ENST00000393931		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000447079	ENST00000310706		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
intron-intron	ENST00000559545	ENST00000540235		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
intron-5UTR	ENST00000559545	ENST00000393930		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
intron-5UTR	ENST00000559545	ENST00000393931		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
intron-5UTR	ENST00000559545	ENST00000310706		TCGA	LD	BRCA	TCGA-B6-A0RH-01A	CDK12	chr17	37657692	+	JUP	chr17	39928114	-
intron-3UTR	ENST00000571688	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000413364	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
intron-3UTR	ENST00000339430	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000381810	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
intron-3UTR	ENST00000570904	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000571459	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000572255	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
intron-3UTR	ENST00000576036	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000574763	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000571976	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5UTR-3UTR	ENST00000574703	ENST00000469908		TCGA	LD	BRCA	TCGA-B6-A0RI-01A	LITAF	chr16	11680742	-	ABCA17P	chr16	2411117	+
5CDS-intron	ENST00000455140	ENST00000601935		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000455140	ENST00000600313		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000455140	ENST00000596211		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000455140	ENST00000359788		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000455140	ENST00000601010		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000455140	ENST00000599168		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000248070	ENST00000601935		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000248070	ENST00000600313		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000248070	ENST00000596211		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000248070	ENST00000359788		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000248070	ENST00000601010		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000248070	ENST00000599168		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000535753	ENST00000601935		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000535753	ENST00000600313		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000535753	ENST00000596211		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000535753	ENST00000359788		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000535753	ENST00000601010		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000535753	ENST00000599168		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000594975	ENST00000601935		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000594975	ENST00000600313		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000594975	ENST00000596211		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000594975	ENST00000359788		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000594975	ENST00000601010		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000594975	ENST00000599168		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000602009	ENST00000601935		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000602009	ENST00000600313		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000602009	ENST00000596211		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000602009	ENST00000359788		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000602009	ENST00000601010		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000602009	ENST00000599168		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000597937	ENST00000601935		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000597937	ENST00000600313		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000597937	ENST00000596211		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000597937	ENST00000359788		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000597937	ENST00000601010		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
5CDS-intron	ENST00000597937	ENST00000599168		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	EPS15L1	chr19	16524584	-	ZNF675	chr19	23757034	-
In-frame	ENST00000272907	ENST00000399881		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	NYAP2	chr2	226273817	+	KCNU1	chr8	36763226	+
5CDS-intron	ENST00000272907	ENST00000518904		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	NYAP2	chr2	226273817	+	KCNU1	chr8	36763226	+
In-frame	ENST00000409269	ENST00000399881		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	NYAP2	chr2	226273817	+	KCNU1	chr8	36763226	+
5CDS-intron	ENST00000409269	ENST00000518904		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	NYAP2	chr2	226273817	+	KCNU1	chr8	36763226	+
5CDS-3UTR	ENST00000328257	ENST00000528638		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
5CDS-3UTR	ENST00000328257	ENST00000313578		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
5CDS-3UTR	ENST00000398427	ENST00000528638		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
5CDS-3UTR	ENST00000398427	ENST00000313578		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
3UTR-3UTR	ENST00000542710	ENST00000528638		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
3UTR-3UTR	ENST00000542710	ENST00000313578		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
intron-3UTR	ENST00000543525	ENST00000528638		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
intron-3UTR	ENST00000543525	ENST00000313578		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	PPME1	chr11	73915490	+	AQP11	chr11	77320343	+
In-frame	ENST00000357387	ENST00000264664		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	RICTOR	chr5	39074213	-	FGF10	chr5	44310632	-
In-frame	ENST00000296782	ENST00000264664		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	RICTOR	chr5	39074213	-	FGF10	chr5	44310632	-
intron-3CDS	ENST00000503698	ENST00000264664		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	RICTOR	chr5	39074213	-	FGF10	chr5	44310632	-
In-frame	ENST00000294309	ENST00000287263		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000294309	ENST00000330843		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000294309	ENST00000522727		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000294309	ENST00000523182		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000294309	ENST00000524118		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
In-frame	ENST00000542467	ENST00000287263		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000542467	ENST00000330843		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
Frame-shit	ENST00000542467	ENST00000522727		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
5CDS-5UTR	ENST00000542467	ENST00000523182		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
5CDS-intron	ENST00000542467	ENST00000524118		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
3UTR-3CDS	ENST00000442692	ENST00000287263		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
3UTR-3CDS	ENST00000442692	ENST00000330843		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
3UTR-3CDS	ENST00000442692	ENST00000522727		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
3UTR-5UTR	ENST00000442692	ENST00000523182		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
3UTR-intron	ENST00000442692	ENST00000524118		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	TPCN2	chr11	68831435	+	RAB11FIP1	chr8	37720631	-
5UTR-3CDS	ENST00000456783	ENST00000594202		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-3CDS	ENST00000456783	ENST00000389133		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-3CDS	ENST00000456783	ENST00000252771		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-3CDS	ENST00000456783	ENST00000600676		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-intron	ENST00000456783	ENST00000599236		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-intron	ENST00000456783	ENST00000596536		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-intron	ENST00000456783	ENST00000595033		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-intron	ENST00000456783	ENST00000539407		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-intron	ENST00000456783	ENST00000596951		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-intron	ENST00000456783	ENST00000597512		TCGA	LD	BRCA	TCGA-B6-A0RL-01A	ZNF492	chr19	22817223	+	FCHO1	chr19	17897383	+
5UTR-3CDS	ENST00000469379	ENST00000261769		TCGA	LD	BRCA	TCGA-B6-A0RN-01A	DEXI	chr16	11027701	-	CDH1	chr16	68844100	+
5UTR-3CDS	ENST00000469379	ENST00000422392		TCGA	LD	BRCA	TCGA-B6-A0RN-01A	DEXI	chr16	11027701	-	CDH1	chr16	68844100	+
5UTR-3UTR	ENST00000469379	ENST00000562836		TCGA	LD	BRCA	TCGA-B6-A0RN-01A	DEXI	chr16	11027701	-	CDH1	chr16	68844100	+
intron-3CDS	ENST00000331808	ENST00000261769		TCGA	LD	BRCA	TCGA-B6-A0RN-01A	DEXI	chr16	11027701	-	CDH1	chr16	68844100	+
intron-3CDS	ENST00000331808	ENST00000422392		TCGA	LD	BRCA	TCGA-B6-A0RN-01A	DEXI	chr16	11027701	-	CDH1	chr16	68844100	+
intron-3UTR	ENST00000331808	ENST00000562836		TCGA	LD	BRCA	TCGA-B6-A0RN-01A	DEXI	chr16	11027701	-	CDH1	chr16	68844100	+
intron-3CDS	ENST00000259818	ENST00000395407		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
intron-3CDS	ENST00000259818	ENST00000561153		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
intron-3CDS	ENST00000259818	ENST00000340965		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
intron-3UTR	ENST00000259818	ENST00000561027		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
5UTR-3CDS	ENST00000473006	ENST00000395407		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
5UTR-3CDS	ENST00000473006	ENST00000561153		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
5UTR-3CDS	ENST00000473006	ENST00000340965		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
5UTR-3UTR	ENST00000473006	ENST00000561027		TCGA	LD	BRCA	TCGA-B6-A0RO-01A	TUBB2B	chr6	3231790	-	PAQR5	chr15	69672223	+
In-frame	ENST00000393078	ENST00000491148		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
In-frame	ENST00000393078	ENST00000282957		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
5CDS-intron	ENST00000393078	ENST00000498639		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-3CDS	ENST00000485588	ENST00000491148		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-3CDS	ENST00000485588	ENST00000282957		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-intron	ENST00000485588	ENST00000498639		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
In-frame	ENST00000393080	ENST00000491148		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
In-frame	ENST00000393080	ENST00000282957		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
5CDS-intron	ENST00000393080	ENST00000498639		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
In-frame	ENST00000467132	ENST00000491148		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
In-frame	ENST00000467132	ENST00000282957		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
5CDS-intron	ENST00000467132	ENST00000498639		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-3CDS	ENST00000482740	ENST00000491148		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-3CDS	ENST00000482740	ENST00000282957		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-intron	ENST00000482740	ENST00000498639		TCGA	LD	BRCA	TCGA-B6-A0RP-01A	SERPINA3	chr14	95081421	+	CPB1	chr3	148563211	+
intron-3CDS	ENST00000600714	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000600714	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000600714	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000601257	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000601257	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3UTR	ENST00000601257	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000301096	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000301096	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000301096	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000544146	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000544146	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000544146	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000536937	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000536937	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000536937	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000597597	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000597597	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000597597	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000541777	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000541777	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000541777	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000545872	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000545872	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000545872	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000594682	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000594682	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3UTR	ENST00000594682	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000391789	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000391789	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000391789	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000596930	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000596930	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000596930	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000597161	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3CDS	ENST00000597161	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
intron-3UTR	ENST00000597161	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000598536	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000598536	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3UTR	ENST00000598536	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000600457	ENST00000337080		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3CDS	ENST00000600457	ENST00000592949		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-3UTR	ENST00000600457	ENST00000592171		TCGA	LD	BRCA	TCGA-B6-A0RQ-01A	ZNF83	chr19	53193696	-	ZNF444	chr19	56669863	+
5UTR-intron	ENST00000274695	ENST00000216281		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000274695	ENST00000334701		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000274695	ENST00000441629		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-5UTR	ENST00000274695	ENST00000558600		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000378624	ENST00000216281		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000378624	ENST00000334701		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000378624	ENST00000441629		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
5UTR-5UTR	ENST00000378624	ENST00000558600		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000378610	ENST00000216281		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000378610	ENST00000334701		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000378610	ENST00000441629		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000378610	ENST00000558600		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000476517	ENST00000216281		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000476517	ENST00000334701		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-intron	ENST00000476517	ENST00000441629		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-5UTR	ENST00000476517	ENST00000558600		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CDKAL1	chr6	20535625	+	HSP90AA1	chr14	102568422	-
intron-3CDS	ENST00000330387	ENST00000393054		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000330387	ENST00000310018		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000330387	ENST00000353492		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-intron	ENST00000330387	ENST00000483139		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000456390	ENST00000393054		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000456390	ENST00000310018		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000456390	ENST00000353492		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-intron	ENST00000456390	ENST00000483139		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000452463	ENST00000393054		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000452463	ENST00000310018		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000452463	ENST00000353492		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-intron	ENST00000452463	ENST00000483139		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000458726	ENST00000393054		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000458726	ENST00000310018		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000458726	ENST00000353492		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-intron	ENST00000458726	ENST00000483139		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000468127	ENST00000393054		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000468127	ENST00000310018		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-3CDS	ENST00000468127	ENST00000353492		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
intron-intron	ENST00000468127	ENST00000483139		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	CREB3L2	chr7	137564036	-	ATP6V0A4	chr7	138434062	-
In-frame	ENST00000397128	ENST00000274242		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
In-frame	ENST00000397128	ENST00000509877		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
5CDS-5UTR	ENST00000397128	ENST00000504562		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
5CDS-5UTR	ENST00000397128	ENST00000508493		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
In-frame	ENST00000354209	ENST00000274242		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
In-frame	ENST00000354209	ENST00000509877		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
5CDS-5UTR	ENST00000354209	ENST00000504562		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
5CDS-5UTR	ENST00000354209	ENST00000508493		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
In-frame	ENST00000296800	ENST00000274242		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
In-frame	ENST00000296800	ENST00000509877		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
5CDS-5UTR	ENST00000296800	ENST00000504562		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
5CDS-5UTR	ENST00000296800	ENST00000508493		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	PRKAA1	chr5	40798165	-	RPL37	chr5	40834708	-
intron-3CDS	ENST00000449833	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000449833	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000449833	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000409161	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000409161	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000409161	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000423696	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000423696	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000423696	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000338508	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000338508	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000338508	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000409530	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000409530	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000409530	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000449116	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000449116	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000449116	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000357171	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000357171	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000357171	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000468619	ENST00000262219		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000468619	ENST00000419625		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
intron-intron	ENST00000468619	ENST00000519045		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SHANK2	chr11	70935743	-	ANXA13	chr8	124724993	-
5CDS-5UTR	ENST00000301031	ENST00000421184		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000301031	ENST00000393092		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000301031	ENST00000261615		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000579310	ENST00000421184		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000579310	ENST00000393092		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000579310	ENST00000261615		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000568929	ENST00000421184		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000568929	ENST00000393092		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-5UTR	ENST00000568929	ENST00000261615		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000566857	ENST00000421184		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000566857	ENST00000393092		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000566857	ENST00000261615		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	SPATA33	chr16	89724829	+	DPEP1	chr16	89696713	+
5CDS-intron	ENST00000356352	ENST00000422945		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000356352	ENST00000556068		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000356352	ENST00000554442		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000356352	ENST00000328724		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000350249		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000445439		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000334743		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000557095		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000556260		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000556946		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000356352	ENST00000557714		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000422945		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000357604	ENST00000556068		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000357604	ENST00000554442		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000357604	ENST00000328724		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000350249		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000445439		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000334743		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000557095		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000556260		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000556946		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000357604	ENST00000557714		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000422945		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000397053	ENST00000556068		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000397053	ENST00000554442		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-3UTR	ENST00000397053	ENST00000328724		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000350249		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000445439		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000334743		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000557095		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000556260		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000556946		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
5CDS-intron	ENST00000397053	ENST00000557714		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000422945		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-3UTR	ENST00000460569	ENST00000556068		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-3UTR	ENST00000460569	ENST00000554442		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-3UTR	ENST00000460569	ENST00000328724		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000350249		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000445439		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000334743		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000557095		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000556260		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000556946		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
intron-intron	ENST00000460569	ENST00000557714		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	UPF2	chr10	11984664	-	PPP2R5C	chr14	102252355	+
In-frame	ENST00000310380	ENST00000326793		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
5CDS-intron	ENST00000310380	ENST00000472860		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-3CDS	ENST00000437101	ENST00000326793		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-intron	ENST00000437101	ENST00000472860		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-3CDS	ENST00000429994	ENST00000326793		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-intron	ENST00000429994	ENST00000472860		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-3CDS	ENST00000355729	ENST00000326793		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-intron	ENST00000355729	ENST00000472860		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-3CDS	ENST00000460582	ENST00000326793		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-intron	ENST00000460582	ENST00000472860		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-3CDS	ENST00000356740	ENST00000326793		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
intron-intron	ENST00000356740	ENST00000472860		TCGA	LD	BRCA	TCGA-B6-A0RS-01A	XXYLT1	chr3	194991284	-	ACAP2	chr3	195066046	-
In-frame	ENST00000375643	ENST00000442668		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
In-frame	ENST00000375643	ENST00000358855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
In-frame	ENST00000375643	ENST00000545558		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000375643	ENST00000535387		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000375643	ENST00000542053		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000375643	ENST00000543985		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-3CDS	ENST00000375629	ENST00000442668		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-3CDS	ENST00000375629	ENST00000358855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-3CDS	ENST00000375629	ENST00000545558		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-intron	ENST00000375629	ENST00000535387		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-intron	ENST00000375629	ENST00000542053		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-intron	ENST00000375629	ENST00000543985		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
Frame-shit	ENST00000443024	ENST00000442668		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
Frame-shit	ENST00000443024	ENST00000358855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
Frame-shit	ENST00000443024	ENST00000545558		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000443024	ENST00000535387		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000443024	ENST00000542053		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000443024	ENST00000543985		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
In-frame	ENST00000447699	ENST00000442668		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
In-frame	ENST00000447699	ENST00000358855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
In-frame	ENST00000447699	ENST00000545558		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000447699	ENST00000535387		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000447699	ENST00000542053		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5CDS-intron	ENST00000447699	ENST00000543985		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-3CDS	ENST00000375627	ENST00000442668		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-3CDS	ENST00000375627	ENST00000358855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-3CDS	ENST00000375627	ENST00000545558		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-intron	ENST00000375627	ENST00000535387		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-intron	ENST00000375627	ENST00000542053		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-intron	ENST00000375627	ENST00000543985		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-3CDS	ENST00000474340	ENST00000442668		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-3CDS	ENST00000474340	ENST00000358855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-3CDS	ENST00000474340	ENST00000545558		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-intron	ENST00000474340	ENST00000535387		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-intron	ENST00000474340	ENST00000542053		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
intron-intron	ENST00000474340	ENST00000543985		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	IARS	chr9	95048004	-	NOL8	chr9	95073541	-
5UTR-3CDS	ENST00000348520	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000380038	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000389744	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000557575	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000553286	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000347839	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000555836	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000334553	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000246489	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000557450	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000554280	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000452929	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000445352	ENST00000409074		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000556253		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000247618		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000477116		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
In-frame	ENST00000238616	ENST00000303575		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	NEK9	chr14	75593406	-	TMED10	chr14	75602589	-
5CDS-5UTR	ENST00000238616	ENST00000557670		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	NEK9	chr14	75593406	-	TMED10	chr14	75602589	-
intron-3CDS	ENST00000555763	ENST00000303575		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	NEK9	chr14	75593406	-	TMED10	chr14	75602589	-
intron-5UTR	ENST00000555763	ENST00000557670		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	NEK9	chr14	75593406	-	TMED10	chr14	75602589	-
In-frame	ENST00000313486	ENST00000336868		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000313486	ENST00000577098		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000313486	ENST00000575801		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-intron	ENST00000313486	ENST00000538650		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000313486	ENST00000537628		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
In-frame	ENST00000539476	ENST00000336868		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000539476	ENST00000577098		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000539476	ENST00000575801		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-intron	ENST00000539476	ENST00000538650		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000539476	ENST00000537628		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNA	chr17	1444860	-	NXN	chr17	729318	-
In-frame	ENST00000534749	ENST00000353903		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
In-frame	ENST00000534749	ENST00000294288		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
In-frame	ENST00000436757	ENST00000353903		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
In-frame	ENST00000436757	ENST00000294288		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
In-frame	ENST00000356404	ENST00000353903		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
In-frame	ENST00000356404	ENST00000294288		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
intron-3CDS	ENST00000526450	ENST00000353903		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
intron-3CDS	ENST00000526450	ENST00000294288		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PITPNM1	chr11	67267194	-	CABP2	chr11	67287631	-
intron-3CDS	ENST00000422945	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000422945	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000422945	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000422945	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000556068	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000556068	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000556068	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000556068	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000554442	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000554442	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000554442	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000554442	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000328724	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000328724	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000328724	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000328724	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000350249	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000350249	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000350249	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000350249	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000445439	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000445439	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000445439	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000445439	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000334743	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000334743	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000334743	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000334743	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000557095	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000557095	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000557095	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000557095	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000556260	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000556260	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000556260	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000556260	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000556946	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000556946	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000556946	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000556946	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000557714	ENST00000262631		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000557714	ENST00000595652		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
In-frame	ENST00000557714	ENST00000415950		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000557714	ENST00000596348		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PPP2R5C	chr14	102276373	+	SCN1B	chr19	35523432	+
5CDS-5UTR	ENST00000369110	ENST00000357525		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	PREP	chr6	105845728	-	PLN	chr6	118879988	+
In-frame	ENST00000540393	ENST00000268989		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000540393	ENST00000426855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000540393	ENST00000574563		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000254695	ENST00000268989		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000254695	ENST00000426855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000254695	ENST00000574563		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000366401	ENST00000268989		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000366401	ENST00000426855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000366401	ENST00000574563		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000542807	ENST00000268989		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000542807	ENST00000426855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
In-frame	ENST00000542807	ENST00000574563		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
intron-3CDS	ENST00000574709	ENST00000268989		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
intron-3CDS	ENST00000574709	ENST00000426855		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
intron-3CDS	ENST00000574709	ENST00000574563		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RAP1GAP2	chr17	2901670	+	SGSM2	chr17	2281151	+
intron-3CDS	ENST00000341084	ENST00000360370		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000341084	ENST00000346785		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000341084	ENST00000383598		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000341084	ENST00000315891		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000341084	ENST00000508835		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-intron	ENST00000341084	ENST00000514023		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000519449	ENST00000360370		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000519449	ENST00000346785		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000519449	ENST00000383598		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000519449	ENST00000315891		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000519449	ENST00000508835		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-intron	ENST00000519449	ENST00000514023		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000523255	ENST00000360370		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000523255	ENST00000346785		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000523255	ENST00000383598		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000523255	ENST00000315891		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-3CDS	ENST00000523255	ENST00000508835		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
intron-intron	ENST00000523255	ENST00000514023		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	RNF19A	chr8	101348336	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000336505	ENST00000373547		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
In-frame	ENST00000336505	ENST00000415905		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
In-frame	ENST00000336505	ENST00000451402		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
In-frame	ENST00000336505	ENST00000373546		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
Frame-shit	ENST00000373549	ENST00000373547		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
In-frame	ENST00000373549	ENST00000415905		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
In-frame	ENST00000373549	ENST00000451402		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
In-frame	ENST00000373549	ENST00000373546		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
intron-3CDS	ENST00000487795	ENST00000373547		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
intron-3CDS	ENST00000487795	ENST00000415905		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
intron-3CDS	ENST00000487795	ENST00000451402		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
intron-3CDS	ENST00000487795	ENST00000373546		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCAI	chr9	127904912	-	PPP6C	chr9	127912200	-
5CDS-intron	ENST00000366510	ENST00000483271		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCCPDH	chr1	246890306	+	CNST	chr1	246823501	+
5CDS-intron	ENST00000366510	ENST00000366513		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCCPDH	chr1	246890306	+	CNST	chr1	246823501	+
5CDS-intron	ENST00000366510	ENST00000366512		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SCCPDH	chr1	246890306	+	CNST	chr1	246823501	+
intron-intron	ENST00000601760	ENST00000264784		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000601760	ENST00000506583		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000601760	ENST00000309065		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000601760	ENST00000481042		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000301454	ENST00000264784		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000301454	ENST00000506583		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000301454	ENST00000309065		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000301454	ENST00000481042		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000414491	ENST00000264784		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000414491	ENST00000506583		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000414491	ENST00000309065		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
intron-intron	ENST00000414491	ENST00000481042		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000334510	ENST00000264784		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000334510	ENST00000506583		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000334510	ENST00000309065		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
5CDS-intron	ENST00000334510	ENST00000481042		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLC25A23	chr19	6456431	-	SLC2A9	chr4	9772993	-
In-frame	ENST00000380516	ENST00000322954		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
In-frame	ENST00000380516	ENST00000539319		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
In-frame	ENST00000380516	ENST00000379983		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
In-frame	ENST00000380516	ENST00000560441		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5CDS-intron	ENST00000380516	ENST00000559183		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000536328	ENST00000322954		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000536328	ENST00000539319		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000536328	ENST00000379983		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000536328	ENST00000560441		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-intron	ENST00000536328	ENST00000559183		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000557950	ENST00000322954		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000557950	ENST00000539319		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000557950	ENST00000379983		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000557950	ENST00000560441		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-intron	ENST00000557950	ENST00000559183		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	SLTM	chr15	59209134	-	UACA	chr15	70991999	-
5UTR-3CDS	ENST00000361905	ENST00000229922		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000361905	ENST00000489374		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000361905	ENST00000378990		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000361905	ENST00000493172		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000361905	ENST00000465994		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000527636	ENST00000229922		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000527636	ENST00000489374		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000527636	ENST00000378990		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000527636	ENST00000493172		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000527636	ENST00000465994		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000527575	ENST00000229922		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000527575	ENST00000489374		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000527575	ENST00000378990		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000527575	ENST00000493172		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000527575	ENST00000465994		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000334310	ENST00000229922		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000334310	ENST00000489374		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000334310	ENST00000378990		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000334310	ENST00000493172		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000334310	ENST00000465994		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-3CDS	ENST00000361985	ENST00000229922		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-3CDS	ENST00000361985	ENST00000489374		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-intron	ENST00000361985	ENST00000378990		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-intron	ENST00000361985	ENST00000493172		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-intron	ENST00000361985	ENST00000465994		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-3CDS	ENST00000526600	ENST00000229922		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-3CDS	ENST00000526600	ENST00000489374		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-intron	ENST00000526600	ENST00000378990		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-intron	ENST00000526600	ENST00000493172		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
intron-intron	ENST00000526600	ENST00000465994		TCGA	LD	BRCA	TCGA-B6-A0RT-01A	TEAD1	chr11	12697108	+	CAP2	chr6	17463227	+
In-frame	ENST00000447540	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000447540	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000447540	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000447540	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000447540	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000447540	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000566029	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000566029	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000566029	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000566029	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000566029	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000566029	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000564845	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000564845	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000564845	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000564845	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000564845	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000564845	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000398510	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000398510	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000398510	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000398510	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
In-frame	ENST00000398510	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000398510	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000564582	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000564582	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000564582	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000564582	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000564582	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000564582	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	CHD9	chr16	53191453	+	RAD51B	chr14	68758601	+
5CDS-5UTR	ENST00000300527	ENST00000334482		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000300527	ENST00000301522		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000300527	ENST00000435703		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000310645	ENST00000334482		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000310645	ENST00000301522		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000310645	ENST00000435703		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000357838	ENST00000334482		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000357838	ENST00000301522		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000357838	ENST00000435703		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000409416	ENST00000334482		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000409416	ENST00000301522		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000409416	ENST00000435703		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000397763	ENST00000334482		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000397763	ENST00000301522		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000397763	ENST00000435703		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
intron-5UTR	ENST00000460886	ENST00000334482		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
intron-5UTR	ENST00000460886	ENST00000301522		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
intron-5UTR	ENST00000460886	ENST00000435703		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	COL6A2	chr21	47538590	+	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000265036	ENST00000331251		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	DEPDC1B	chr5	59982789	-	NPBWR1	chr8	53852271	+
5CDS-5UTR	ENST00000453022	ENST00000331251		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	DEPDC1B	chr5	59982789	-	NPBWR1	chr8	53852271	+
5CDS-5UTR	ENST00000545085	ENST00000331251		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	DEPDC1B	chr5	59982789	-	NPBWR1	chr8	53852271	+
intron-5UTR	ENST00000509006	ENST00000331251		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	DEPDC1B	chr5	59982789	-	NPBWR1	chr8	53852271	+
5CDS-5UTR	ENST00000366835	ENST00000374431		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000366835	ENST00000541779		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
5CDS-5UTR	ENST00000366835	ENST00000374430		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000366835	ENST00000358883		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000366835	ENST00000538760		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-5UTR	ENST00000474478	ENST00000374431		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-intron	ENST00000474478	ENST00000541779		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-5UTR	ENST00000474478	ENST00000374430		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-intron	ENST00000474478	ENST00000358883		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-intron	ENST00000474478	ENST00000538760		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-5UTR	ENST00000537914	ENST00000374431		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-intron	ENST00000537914	ENST00000541779		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-5UTR	ENST00000537914	ENST00000374430		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-intron	ENST00000537914	ENST00000358883		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
intron-intron	ENST00000537914	ENST00000538760		TCGA	LD	BRCA	TCGA-B6-A0RU-01A	TMEM63A	chr1	226036193	-	LPAR1	chr9	113735838	-
5UTR-3CDS	ENST00000399302	ENST00000454584		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
5UTR-3CDS	ENST00000399302	ENST00000278187		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
5UTR-3CDS	ENST00000399302	ENST00000433790		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
5UTR-intron	ENST00000399302	ENST00000533092		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
3UTR-3CDS	ENST00000527250	ENST00000454584		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
3UTR-3CDS	ENST00000527250	ENST00000278187		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
3UTR-3CDS	ENST00000527250	ENST00000433790		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
3UTR-intron	ENST00000527250	ENST00000533092		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
intron-3CDS	ENST00000527788	ENST00000454584		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
intron-3CDS	ENST00000527788	ENST00000278187		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
intron-3CDS	ENST00000527788	ENST00000433790		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
intron-intron	ENST00000527788	ENST00000533092		TCGA	LD	BRCA	TCGA-B6-A0WT-01A	QSER1	chr11	32914880	+	GAS2	chr11	22747838	+
5UTR-3CDS	ENST00000407472	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000407472	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000407472	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000407472	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000407472	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000328554	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000328554	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000328554	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000328554	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000328554	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000484072	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000484072	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000484072	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000484072	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000484072	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000405640	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000405640	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000405640	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000405640	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000405640	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	C22orf29	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000329517	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000329517	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000329517	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000329517	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000329517	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000403325	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000403325	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000403325	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000403325	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000403325	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000405009	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000405009	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000405009	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000405009	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000405009	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000460402	ENST00000340170		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000460402	ENST00000263208		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-3CDS	ENST00000460402	ENST00000541063		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000460402	ENST00000546308		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
5UTR-intron	ENST00000460402	ENST00000464189		TCGA	LD	BRCA	TCGA-B6-A0WW-01A	GNB1L	chr22	19841966	-	HIRA	chr22	19319079	-
Frame-shit	ENST00000257963	ENST00000359282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000603815		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000437231		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000447282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000549863		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000359462		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000546463		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000552296		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000552819		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000455667		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000439930		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000548933		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000257963	ENST00000541275		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000359282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000603815		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000437231		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000447282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000549863		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000359462		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000546463		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000552296		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000552819		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000455667		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000439930		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000548933		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000541224	ENST00000541275		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000359282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000603815		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000437231		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000447282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000549863		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000359462		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000546463		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000552296		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000552819		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000455667		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000439930		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000548933		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000426655	ENST00000541275		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000359282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000603815		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000437231		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000447282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000549863		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000359462		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000546463		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000552296		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000552819		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000455667		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000439930		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000548933		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
Frame-shit	ENST00000415850	ENST00000541275		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000359282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000603815		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000437231		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000447282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000549863		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000359462		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000546463		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000552296		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000552819		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000455667		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000439930		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000548933		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000542485	ENST00000541275		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000359282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000603815		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000437231		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000447282		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000549863		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000359462		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000546463		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000552296		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000552819		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000455667		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000439930		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000548933		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000563121	ENST00000541275		TCGA	LD	BRCA	TCGA-B6-A0WX-01A	ACVR1B	chr12	52345618	+	PCBP2	chr12	53849669	+
intron-3CDS	ENST00000340748	ENST00000264833		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-intron	ENST00000340748	ENST00000590841		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000540357	ENST00000264833		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-intron	ENST00000540357	ENST00000590841		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000359526	ENST00000264833		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-intron	ENST00000359526	ENST00000590841		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000589538	ENST00000264833		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
intron-intron	ENST00000589538	ENST00000590841		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	DNMT1	chr19	10341880	-	OLFM2	chr19	9971470	-
5UTR-3CDS	ENST00000301923	ENST00000400337		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
5UTR-3CDS	ENST00000301923	ENST00000355480		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
5UTR-3CDS	ENST00000301923	ENST00000359759		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
5UTR-intron	ENST00000301923	ENST00000459895		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000402203	ENST00000400337		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000402203	ENST00000355480		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000402203	ENST00000359759		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-intron	ENST00000402203	ENST00000459895		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000454349	ENST00000400337		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000454349	ENST00000355480		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000454349	ENST00000359759		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-intron	ENST00000454349	ENST00000459895		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000335727	ENST00000400337		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000335727	ENST00000355480		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000335727	ENST00000359759		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-intron	ENST00000335727	ENST00000459895		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000497559	ENST00000400337		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000497559	ENST00000355480		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-3CDS	ENST00000497559	ENST00000359759		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
intron-intron	ENST00000497559	ENST00000459895		TCGA	LD	BRCA	TCGA-B6-A0WY-01A	TNRC6B	chr22	40441002	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000308982	ENST00000265062		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ACAD9	chr3	128603589	+	RAB7A	chr3	128532170	+
Frame-shit	ENST00000308982	ENST00000482525		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ACAD9	chr3	128603589	+	RAB7A	chr3	128532170	+
Frame-shit	ENST00000308982	ENST00000485280		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ACAD9	chr3	128603589	+	RAB7A	chr3	128532170	+
intron-3CDS	ENST00000511526	ENST00000265062		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ACAD9	chr3	128603589	+	RAB7A	chr3	128532170	+
intron-3CDS	ENST00000511526	ENST00000482525		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ACAD9	chr3	128603589	+	RAB7A	chr3	128532170	+
intron-3CDS	ENST00000511526	ENST00000485280		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ACAD9	chr3	128603589	+	RAB7A	chr3	128532170	+
intron-intron	ENST00000574727	ENST00000563763		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ALOX12P2	chr17	6757772	+	WSCD1	chr17	5983691	+
intron-5UTR	ENST00000574727	ENST00000574946		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ALOX12P2	chr17	6757772	+	WSCD1	chr17	5983691	+
intron-intron	ENST00000574727	ENST00000573634		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ALOX12P2	chr17	6757772	+	WSCD1	chr17	5983691	+
intron-5UTR	ENST00000574727	ENST00000317744		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ALOX12P2	chr17	6757772	+	WSCD1	chr17	5983691	+
intron-5UTR	ENST00000574727	ENST00000574232		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ALOX12P2	chr17	6757772	+	WSCD1	chr17	5983691	+
intron-5UTR	ENST00000574727	ENST00000539421		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	ALOX12P2	chr17	6757772	+	WSCD1	chr17	5983691	+
In-frame	ENST00000582783	ENST00000252891		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
In-frame	ENST00000582783	ENST00000598779		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
In-frame	ENST00000582783	ENST00000540131		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
5CDS-intron	ENST00000582783	ENST00000599594		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
In-frame	ENST00000392035	ENST00000252891		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
In-frame	ENST00000392035	ENST00000598779		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
In-frame	ENST00000392035	ENST00000540131		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
5CDS-intron	ENST00000392035	ENST00000599594		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
intron-3CDS	ENST00000584868	ENST00000252891		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
intron-3CDS	ENST00000584868	ENST00000598779		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
intron-3CDS	ENST00000584868	ENST00000540131		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
intron-intron	ENST00000584868	ENST00000599594		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	C19orf47	chr19	40839758	-	NUMBL	chr19	41179554	-
intron-5UTR	ENST00000466652	ENST00000367846		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	CREG1	chr1	167522625	-	MPC2	chr1	167905136	-
intron-5UTR	ENST00000466652	ENST00000271373		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	CREG1	chr1	167522625	-	MPC2	chr1	167905136	-
5CDS-5UTR	ENST00000370509	ENST00000367846		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	CREG1	chr1	167522625	-	MPC2	chr1	167905136	-
5CDS-5UTR	ENST00000370509	ENST00000271373		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	CREG1	chr1	167522625	-	MPC2	chr1	167905136	-
Frame-shit	ENST00000367843	ENST00000367854		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000367843	ENST00000537350		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000367843	ENST00000472038		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000432587	ENST00000367854		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000432587	ENST00000537350		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000432587	ENST00000472038		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000312263	ENST00000367854		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000312263	ENST00000537350		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000312263	ENST00000472038		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000367840	ENST00000367854		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000367840	ENST00000537350		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000367840	ENST00000472038		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
intron-3CDS	ENST00000470919	ENST00000367854		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
intron-3CDS	ENST00000470919	ENST00000537350		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
intron-intron	ENST00000470919	ENST00000472038		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DCAF6	chr1	167906246	+	RCSD1	chr1	167653137	+
5UTR-3CDS	ENST00000578681	ENST00000323777		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61851736	+	HSF5	chr17	56499791	-
5UTR-3CDS	ENST00000583590	ENST00000323777		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61851736	+	HSF5	chr17	56499791	-
5UTR-3CDS	ENST00000359353	ENST00000323777		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61851736	+	HSF5	chr17	56499791	-
5UTR-3CDS	ENST00000389924	ENST00000323777		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61851736	+	HSF5	chr17	56499791	-
intron-3CDS	ENST00000457800	ENST00000323777		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61851736	+	HSF5	chr17	56499791	-
intron-3CDS	ENST00000582985	ENST00000323777		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61851736	+	HSF5	chr17	56499791	-
5UTR-intron	ENST00000578681	ENST00000500597		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-intron	ENST00000578681	ENST00000407977		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-intron	ENST00000578681	ENST00000583753		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-intron	ENST00000578681	ENST00000584437		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-intron	ENST00000578681	ENST00000577716		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-5UTR	ENST00000578681	ENST00000581868		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-5UTR	ENST00000578681	ENST00000577625		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-intron	ENST00000578681	ENST00000580014		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000583590	ENST00000500597		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000583590	ENST00000407977		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000583590	ENST00000583753		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000583590	ENST00000584437		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000583590	ENST00000577716		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000583590	ENST00000581868		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000583590	ENST00000577625		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000583590	ENST00000580014		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000359353	ENST00000500597		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000359353	ENST00000407977		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000359353	ENST00000583753		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000359353	ENST00000584437		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000359353	ENST00000577716		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000359353	ENST00000581868		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000359353	ENST00000577625		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000359353	ENST00000580014		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000389924	ENST00000500597		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000389924	ENST00000407977		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000389924	ENST00000583753		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000389924	ENST00000584437		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000389924	ENST00000577716		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000389924	ENST00000581868		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000389924	ENST00000577625		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000389924	ENST00000580014		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000457800	ENST00000500597		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000457800	ENST00000407977		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000457800	ENST00000583753		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000457800	ENST00000584437		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000457800	ENST00000577716		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000457800	ENST00000581868		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000457800	ENST00000577625		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000457800	ENST00000580014		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000582985	ENST00000500597		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000582985	ENST00000407977		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000582985	ENST00000583753		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000582985	ENST00000584437		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000582985	ENST00000577716		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000582985	ENST00000581868		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-5UTR	ENST00000582985	ENST00000577625		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
intron-intron	ENST00000582985	ENST00000580014		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	DDX42	chr17	61852538	+	RNF43	chr17	56448394	-
5UTR-5UTR	ENST00000381323	ENST00000536668		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-intron	ENST00000381323	ENST00000544994		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-intron	ENST00000381323	ENST00000228811		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-intron	ENST00000381323	ENST00000540107		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
intron-5UTR	ENST00000355549	ENST00000536668		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
intron-intron	ENST00000355549	ENST00000544994		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
intron-intron	ENST00000355549	ENST00000228811		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
intron-intron	ENST00000355549	ENST00000540107		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-5UTR	ENST00000406434	ENST00000536668		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-intron	ENST00000406434	ENST00000544994		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-intron	ENST00000406434	ENST00000228811		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5UTR-intron	ENST00000406434	ENST00000540107		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	FAM49A	chr2	16805132	-	PRR4	chr12	11126320	-
5CDS-5UTR	ENST00000377791	ENST00000510325		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000377791	ENST00000359359		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000377791	ENST00000480824		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000377791	ENST00000355190		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000377791	ENST00000373685		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000602637	ENST00000510325		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000602637	ENST00000359359		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000602637	ENST00000480824		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000602637	ENST00000355190		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000602637	ENST00000373685		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	HIST1H2AC	chr6	26124473	+	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000361138	ENST00000453658		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-5UTR	ENST00000361138	ENST00000377259		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-5UTR	ENST00000361138	ENST00000377245		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-5UTR	ENST00000361138	ENST00000348208		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-5UTR	ENST00000361138	ENST00000265384		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-5UTR	ENST00000361138	ENST00000535702		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-5UTR	ENST00000361138	ENST00000539225		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
5CDS-intron	ENST00000361138	ENST00000498204		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000453658		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000377259		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000377245		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000348208		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000265384		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000535702		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000471372	ENST00000539225		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-intron	ENST00000471372	ENST00000498204		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	SMC5	chr9	72915116	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000437508	ENST00000451320		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000429148		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000353617		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000405727		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000437508	ENST00000356064		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000437508	ENST00000511289		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000494872	ENST00000451320		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000494872	ENST00000429148		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000494872	ENST00000353617		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000494872	ENST00000405727		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000494872	ENST00000356064		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000494872	ENST00000511289		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000338700	ENST00000451320		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000338700	ENST00000429148		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000338700	ENST00000353617		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000338700	ENST00000405727		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000338700	ENST00000356064		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000338700	ENST00000511289		TCGA	LD	BRCA	TCGA-B6-A0X1-01A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153750777	+
Frame-shit	ENST00000262043	ENST00000302279		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-intron	ENST00000262043	ENST00000342116		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-3UTR	ENST00000262043	ENST00000524546		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-5UTR	ENST00000262043	ENST00000529687		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-3CDS	ENST00000509330	ENST00000302279		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-intron	ENST00000509330	ENST00000342116		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-3UTR	ENST00000509330	ENST00000524546		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-5UTR	ENST00000509330	ENST00000529687		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
Frame-shit	ENST00000393387	ENST00000302279		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-intron	ENST00000393387	ENST00000342116		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-3UTR	ENST00000393387	ENST00000524546		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-5UTR	ENST00000393387	ENST00000529687		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-3CDS	ENST00000420043	ENST00000302279		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-intron	ENST00000420043	ENST00000342116		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-3UTR	ENST00000420043	ENST00000524546		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
intron-5UTR	ENST00000420043	ENST00000529687		TCGA	LD	BRCA	TCGA-B6-A1KC-01B	PHF3	chr6	64423071	+	FNTA	chr8	42919244	+
5CDS-5UTR	ENST00000398665	ENST00000246112		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
5CDS-5UTR	ENST00000398665	ENST00000482627		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000398665	ENST00000452088		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000398665	ENST00000478073		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
intron-5UTR	ENST00000608122	ENST00000246112		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
intron-5UTR	ENST00000608122	ENST00000482627		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
intron-intron	ENST00000608122	ENST00000452088		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
intron-intron	ENST00000608122	ENST00000478073		TCGA	LD	BRCA	TCGA-B6-A1KF-01A	DOT1L	chr19	2180755	+	TLE6	chr19	2978196	+
Frame-shit	ENST00000227918	ENST00000539261		TCGA	LD	BRCA	TCGA-B6-A1KI-01A	SCGB2A2	chr11	62038540	+	MGP	chr12	15037179	-
Frame-shit	ENST00000227918	ENST00000228938		TCGA	LD	BRCA	TCGA-B6-A1KI-01A	SCGB2A2	chr11	62038540	+	MGP	chr12	15037179	-
In-frame	ENST00000525380	ENST00000539261		TCGA	LD	BRCA	TCGA-B6-A1KI-01A	SCGB2A2	chr11	62038540	+	MGP	chr12	15037179	-
In-frame	ENST00000525380	ENST00000228938		TCGA	LD	BRCA	TCGA-B6-A1KI-01A	SCGB2A2	chr11	62038540	+	MGP	chr12	15037179	-
Frame-shit	ENST00000392347	ENST00000355827		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392347	ENST00000373054		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392347	ENST00000373061		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392347	ENST00000373049		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392347	ENST00000324765		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000389641	ENST00000355827		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000389641	ENST00000373054		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000389641	ENST00000373061		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000389641	ENST00000373049		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000389641	ENST00000324765		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
intron-3CDS	ENST00000392346	ENST00000355827		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
intron-3CDS	ENST00000392346	ENST00000373054		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
intron-3CDS	ENST00000392346	ENST00000373061		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
intron-3CDS	ENST00000392346	ENST00000373049		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
intron-3CDS	ENST00000392346	ENST00000324765		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
5UTR-3CDS	ENST00000327026	ENST00000355827		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
5UTR-3CDS	ENST00000327026	ENST00000373054		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
5UTR-3CDS	ENST00000327026	ENST00000373061		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
5UTR-3CDS	ENST00000327026	ENST00000373049		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
5UTR-3CDS	ENST00000327026	ENST00000324765		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392343	ENST00000355827		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392343	ENST00000373054		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392343	ENST00000373061		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392343	ENST00000373049		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000392343	ENST00000324765		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	CCDC57	chr17	80130514	-	DIAPH2	chrX	96327940	+
Frame-shit	ENST00000583610	ENST00000313599		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000583610	ENST00000416109		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000583610	ENST00000396630		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
5CDS-intron	ENST00000583610	ENST00000544331		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000394294	ENST00000313599		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000394294	ENST00000416109		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000394294	ENST00000396630		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
5CDS-intron	ENST00000394294	ENST00000544331		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000264658	ENST00000313599		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000264658	ENST00000416109		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000264658	ENST00000396630		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
5CDS-intron	ENST00000264658	ENST00000544331		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000577399	ENST00000313599		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000577399	ENST00000416109		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
Frame-shit	ENST00000577399	ENST00000396630		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
5CDS-intron	ENST00000577399	ENST00000544331		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	FBXL20	chr17	37499433	-	CD163L1	chr12	7559448	-
5UTR-3CDS	ENST00000276708	ENST00000519824		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-3CDS	ENST00000276708	ENST00000522746		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-3CDS	ENST00000276708	ENST00000523509		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-3CDS	ENST00000276708	ENST00000401979		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-3CDS	ENST00000276708	ENST00000519110		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-5UTR	ENST00000276708	ENST00000522250		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-5UTR	ENST00000276708	ENST00000517654		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-5UTR	ENST00000276708	ENST00000519540		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-5UTR	ENST00000276708	ENST00000522941		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
5UTR-intron	ENST00000276708	ENST00000518879		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	GSDMC	chr8	130798257	-	FAM49B	chr8	130883742	-
In-frame	ENST00000254066	ENST00000542955		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000254066	ENST00000269593		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000394089	ENST00000542955		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000394089	ENST00000269593		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000425707	ENST00000542955		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000425707	ENST00000269593		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000394086	ENST00000542955		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000394086	ENST00000269593		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000394081	ENST00000542955		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000394081	ENST00000269593		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000420042	ENST00000542955		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000420042	ENST00000269593		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	RARA	chr17	38487648	+	IGFBP4	chr17	38609237	+
5CDS-intron	ENST00000376771	ENST00000397228		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000376771	ENST00000523887		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000376771	ENST00000276461		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000376771	ENST00000518586		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000376771	ENST00000335171		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000376771	ENST00000523107		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000376771	ENST00000519638		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000397228		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000523887		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000276461		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000518586		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000335171		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000523107		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
5UTR-intron	ENST00000537536	ENST00000519638		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000397228		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000523887		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000276461		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000518586		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000335171		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000523107		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000476141	ENST00000519638		TCGA	LD	BRCA	TCGA-B6-A1KN-01A	TBC1D25	chrX	48403411	+	ERLIN2	chr8	37607077	+
In-frame	ENST00000217402	ENST00000375200		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	CHMP4B	chr20	32440009	+	ZNF341	chr20	32328708	+
In-frame	ENST00000217402	ENST00000342427		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	CHMP4B	chr20	32440009	+	ZNF341	chr20	32328708	+
intron-3CDS	ENST00000341217	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000341217	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000341217	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000341217	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000341217	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000581407	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581407	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581407	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581407	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581407	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000582266	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000582266	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000582266	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000582266	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000582266	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-3CDS	ENST00000452648	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000452648	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000452648	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000452648	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000452648	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-3CDS	ENST00000582059	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000582059	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000582059	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000582059	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000582059	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-3CDS	ENST00000583953	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000583953	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000583953	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000583953	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000583953	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000577682	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000577682	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000577682	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000577682	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000577682	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000583522	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000583522	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000583522	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000583522	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000583522	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000581381	ENST00000354329		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581381	ENST00000529578		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581381	ENST00000533112		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581381	ENST00000531253		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000581381	ENST00000527372		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27401932	-
intron-5UTR	ENST00000341217	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000341217	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000581407	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000581407	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000582266	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000582266	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000452648	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000452648	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000582059	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000582059	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000583953	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
intron-5UTR	ENST00000583953	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000577682	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000577682	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000583522	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000583522	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000581381	ENST00000408971		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000581381	ENST00000359450		TCGA	LD	BRCA	TCGA-B6-A3ZX-01A	FAM222B	chr17	27169700	-	TIAF1	chr17	27401932	-
In-frame	ENST00000369489	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369489	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369489	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369489	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369489	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000369489	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000457047	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000457047	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000457047	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000457047	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000457047	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000457047	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369487	ENST00000487861		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369487	ENST00000471583		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369487	ENST00000487270		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369487	ENST00000488612		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
In-frame	ENST00000369487	ENST00000390683		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000369487	ENST00000469165		TCGA	LD	BRCA	TCGA-B6-A400-01A	CD58	chr1	117113525	-	RAD51B	chr14	68758601	+
5UTR-5UTR	ENST00000340513	ENST00000376112		TCGA	LD	BRCA	TCGA-B6-A400-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-5UTR	ENST00000340513	ENST00000376105		TCGA	LD	BRCA	TCGA-B6-A400-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-5UTR	ENST00000300403	ENST00000376112		TCGA	LD	BRCA	TCGA-B6-A400-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-5UTR	ENST00000300403	ENST00000376105		TCGA	LD	BRCA	TCGA-B6-A400-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
intron-3UTR	ENST00000327835	ENST00000367201		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000327835	ENST00000367202		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000327835	ENST00000367199		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000327835	ENST00000367198		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000327835	ENST00000367197		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-intron	ENST00000327835	ENST00000477125		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000520336	ENST00000367201		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000520336	ENST00000367202		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000520336	ENST00000367199		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000520336	ENST00000367198		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-3UTR	ENST00000520336	ENST00000367197		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
intron-intron	ENST00000520336	ENST00000477125		TCGA	LD	BRCA	TCGA-B6-A400-01A	ZNF704	chr8	81552761	-	ETNK2	chr1	204101384	-
In-frame	ENST00000310396	ENST00000357685		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
In-frame	ENST00000310396	ENST00000393032		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
In-frame	ENST00000310396	ENST00000361053		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
In-frame	ENST00000310396	ENST00000438022		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
In-frame	ENST00000310396	ENST00000526088		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
In-frame	ENST00000310396	ENST00000532593		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
In-frame	ENST00000310396	ENST00000531169		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000357685		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000393032		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000361053		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000438022		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000526088		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000532593		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000450913	ENST00000531169		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000357685		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000393032		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000361053		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000438022		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000526088		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000532593		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000423795	ENST00000531169		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000357685		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000393032		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000361053		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000438022		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000526088		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000532593		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000495036	ENST00000531169		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000357685		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000393032		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000361053		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000438022		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000526088		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000532593		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
intron-3CDS	ENST00000340646	ENST00000531169		TCGA	LD	BRCA	TCGA-B6-A401-01A	CPED1	chr7	120911484	+	BCO2	chr11	112084447	+
3UTR-3CDS	ENST00000428783	ENST00000380130		TCGA	LD	BRCA	TCGA-B6-A408-01A	EEF1DP3	chr13	32520318	+	N4BP2L1	chr13	32981909	-
3UTR-3CDS	ENST00000428783	ENST00000380139		TCGA	LD	BRCA	TCGA-B6-A408-01A	EEF1DP3	chr13	32520318	+	N4BP2L1	chr13	32981909	-
3UTR-5UTR	ENST00000428783	ENST00000530622		TCGA	LD	BRCA	TCGA-B6-A408-01A	EEF1DP3	chr13	32520318	+	N4BP2L1	chr13	32981909	-
3UTR-5UTR	ENST00000428783	ENST00000459716		TCGA	LD	BRCA	TCGA-B6-A408-01A	EEF1DP3	chr13	32520318	+	N4BP2L1	chr13	32981909	-
3UTR-5UTR	ENST00000428783	ENST00000380133		TCGA	LD	BRCA	TCGA-B6-A408-01A	EEF1DP3	chr13	32520318	+	N4BP2L1	chr13	32981909	-
5CDS-5UTR	ENST00000346329	ENST00000573319		TCGA	LD	BRCA	TCGA-B6-A40B-01A	CTTN	chr11	70256066	+	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000301843	ENST00000573319		TCGA	LD	BRCA	TCGA-B6-A40B-01A	CTTN	chr11	70256066	+	BCAR4	chr16	11914154	-
3UTR-5UTR	ENST00000527622	ENST00000573319		TCGA	LD	BRCA	TCGA-B6-A40B-01A	CTTN	chr11	70256066	+	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000376561	ENST00000573319		TCGA	LD	BRCA	TCGA-B6-A40B-01A	CTTN	chr11	70256066	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000538675	ENST00000573319		TCGA	LD	BRCA	TCGA-B6-A40B-01A	CTTN	chr11	70256066	+	BCAR4	chr16	11914154	-
intron-3CDS	ENST00000399568	ENST00000263119		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399568	ENST00000405822		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399568	ENST00000398319		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399568	ENST00000337989		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-intron	ENST00000399568	ENST00000485008		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000542103	ENST00000263119		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000542103	ENST00000405822		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000542103	ENST00000398319		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000542103	ENST00000337989		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-intron	ENST00000542103	ENST00000485008		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399562	ENST00000263119		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399562	ENST00000405822		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399562	ENST00000398319		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000399562	ENST00000337989		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-intron	ENST00000399562	ENST00000485008		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000333059	ENST00000263119		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000333059	ENST00000405822		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000333059	ENST00000398319		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-3CDS	ENST00000333059	ENST00000337989		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
intron-intron	ENST00000333059	ENST00000485008		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	C22orf39	chr22	19371143	-	CABIN1	chr22	24560368	+
3UTR-3CDS	ENST00000517997	ENST00000488476		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	CDK16	chrX	47077883	+	IGHJ5	chr14	106330067	-
5UTR-3CDS	ENST00000457458	ENST00000488476		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	CDK16	chrX	47077883	+	IGHJ5	chr14	106330067	-
intron-3CDS	ENST00000357227	ENST00000488476		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	CDK16	chrX	47077883	+	IGHJ5	chr14	106330067	-
intron-3CDS	ENST00000518022	ENST00000488476		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	CDK16	chrX	47077883	+	IGHJ5	chr14	106330067	-
intron-3CDS	ENST00000276052	ENST00000488476		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	CDK16	chrX	47077883	+	IGHJ5	chr14	106330067	-
Frame-shit	ENST00000374820	ENST00000349714		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000359226		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000374384		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000374380		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000374385		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000374377		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000397556		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000407996		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000540457		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000542501		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000374820	ENST00000397554		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-5UTR	ENST00000374820	ENST00000491125		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
In-frame	ENST00000452740	ENST00000349714		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000359226		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000374384		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000374380		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000374385		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000374377		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000397556		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000407996		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000540457		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000542501		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-intron	ENST00000452740	ENST00000397554		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
5CDS-5UTR	ENST00000452740	ENST00000491125		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-3CDS	ENST00000480175	ENST00000349714		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000359226		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000374384		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000374380		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000374385		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000374377		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000397556		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000407996		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000540457		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000542501		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-intron	ENST00000480175	ENST00000397554		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
intron-5UTR	ENST00000480175	ENST00000491125		TCGA	LD	BRCA	TCGA-BH-A0AU-01A	PIGU	chr20	33203846	-	UQCC1	chr20	33954417	-
Frame-shit	ENST00000517298	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	CA13	chr8	86180856	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000517298	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	CA13	chr8	86180856	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000321764	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	CA13	chr8	86180856	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000321764	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	CA13	chr8	86180856	+	RBKS	chr2	28055644	-
In-frame	ENST00000254624	ENST00000357668		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
In-frame	ENST00000254624	ENST00000518721		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
5CDS-intron	ENST00000254624	ENST00000520625		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
In-frame	ENST00000334503	ENST00000357668		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
In-frame	ENST00000334503	ENST00000518721		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
5CDS-intron	ENST00000334503	ENST00000520625		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
In-frame	ENST00000519656	ENST00000357668		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
In-frame	ENST00000519656	ENST00000518721		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
5CDS-intron	ENST00000519656	ENST00000520625		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
intron-3CDS	ENST00000521940	ENST00000357668		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
intron-3CDS	ENST00000521940	ENST00000518721		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
intron-intron	ENST00000521940	ENST00000520625		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	EFR3A	chr8	133008744	+	ASAP1	chr8	131249240	-
5UTR-3CDS	ENST00000356056	ENST00000309731		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-5UTR	ENST00000356056	ENST00000564184		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-3CDS	ENST00000444904	ENST00000309731		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-5UTR	ENST00000444904	ENST00000564184		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-3CDS	ENST00000424560	ENST00000309731		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-5UTR	ENST00000424560	ENST00000564184		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-3CDS	ENST00000564571	ENST00000309731		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-5UTR	ENST00000564571	ENST00000564184		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-3CDS	ENST00000566885	ENST00000309731		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
5UTR-5UTR	ENST00000566885	ENST00000564184		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
intron-3CDS	ENST00000563542	ENST00000309731		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
intron-5UTR	ENST00000563542	ENST00000564184		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	MYO9A	chr15	72410021	-	GRAMD2	chr15	72455817	-
Frame-shit	ENST00000345330	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000345330	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000345330	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000345330	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000345330	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000345330	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000351217	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000351217	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000351217	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000351217	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000351217	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000351217	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000542234	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000542234	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000542234	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000542234	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000542234	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000542234	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000562924	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000562924	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000562924	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000562924	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000562924	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
Frame-shit	ENST00000562924	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000563691	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000563691	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000563691	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000563691	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000563691	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000563691	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000545878	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000545878	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000545878	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000545878	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000545878	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000545878	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000287226	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000287226	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000287226	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000287226	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000287226	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000287226	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
5UTR-3CDS	ENST00000564551	ENST00000576634		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
5UTR-3CDS	ENST00000564551	ENST00000341633		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
5UTR-3CDS	ENST00000564551	ENST00000417763		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
5UTR-3CDS	ENST00000564551	ENST00000571025		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
5UTR-3CDS	ENST00000564551	ENST00000572600		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
5UTR-3CDS	ENST00000564551	ENST00000445795		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NPTN	chr15	73879865	-	CLUAP1	chr16	3580568	+
In-frame	ENST00000296802	ENST00000511181		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
In-frame	ENST00000296802	ENST00000261416		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
5CDS-intron	ENST00000296802	ENST00000513539		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
5CDS-intron	ENST00000296802	ENST00000509579		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
3UTR-3CDS	ENST00000513356	ENST00000511181		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
3UTR-3CDS	ENST00000513356	ENST00000261416		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
3UTR-intron	ENST00000513356	ENST00000513539		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
3UTR-intron	ENST00000513356	ENST00000509579		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	NSA2	chr5	74066635	+	HEXB	chr5	74009331	+
5CDS-5UTR	ENST00000405995	ENST00000372692		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000405995	ENST00000409104		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000405995	ENST00000322030		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000405995	ENST00000372688		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000405995	ENST00000477806		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-5UTR	ENST00000357304	ENST00000372692		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000357304	ENST00000409104		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000357304	ENST00000322030		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000357304	ENST00000372688		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000357304	ENST00000477806		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-5UTR	ENST00000458550	ENST00000372692		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000458550	ENST00000409104		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000458550	ENST00000322030		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000458550	ENST00000372688		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-intron	ENST00000458550	ENST00000477806		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5UTR-5UTR	ENST00000372249	ENST00000372692		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5UTR-intron	ENST00000372249	ENST00000409104		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5UTR-intron	ENST00000372249	ENST00000322030		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5UTR-intron	ENST00000372249	ENST00000372688		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5UTR-intron	ENST00000372249	ENST00000477806		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
intron-5UTR	ENST00000465931	ENST00000372692		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
intron-intron	ENST00000465931	ENST00000409104		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
intron-intron	ENST00000465931	ENST00000322030		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
intron-intron	ENST00000465931	ENST00000372688		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
intron-intron	ENST00000465931	ENST00000477806		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	PRRC2B	chr9	134354780	+	SET	chr9	131446059	+
5CDS-5UTR	ENST00000353487	ENST00000346693		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	SPPL3	chr12	121341648	-	CD99L2	chrX	149999766	-
5CDS-5UTR	ENST00000353487	ENST00000370377		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	SPPL3	chr12	121341648	-	CD99L2	chrX	149999766	-
5CDS-5UTR	ENST00000353487	ENST00000355149		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	SPPL3	chr12	121341648	-	CD99L2	chrX	149999766	-
5CDS-5UTR	ENST00000353487	ENST00000437787		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	SPPL3	chr12	121341648	-	CD99L2	chrX	149999766	-
5CDS-5UTR	ENST00000353487	ENST00000466436		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	SPPL3	chr12	121341648	-	CD99L2	chrX	149999766	-
5CDS-5UTR	ENST00000353487	ENST00000320893		TCGA	LD	BRCA	TCGA-BH-A0AV-01A	SPPL3	chr12	121341648	-	CD99L2	chrX	149999766	-
5CDS-intron	ENST00000377776	ENST00000536230		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000377776	ENST00000392282		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000377776	ENST00000538427		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000377776	ENST00000367456		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000377776	ENST00000461481		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000377776	ENST00000286332		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000256001	ENST00000536230		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000256001	ENST00000392282		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000256001	ENST00000538427		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000256001	ENST00000367456		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000256001	ENST00000461481		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000256001	ENST00000286332		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000397282	ENST00000536230		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000397282	ENST00000392282		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000397282	ENST00000538427		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000397282	ENST00000367456		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000397282	ENST00000461481		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000397282	ENST00000286332		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000537264	ENST00000536230		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000537264	ENST00000392282		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000537264	ENST00000538427		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-5UTR	ENST00000537264	ENST00000367456		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000537264	ENST00000461481		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
5CDS-intron	ENST00000537264	ENST00000286332		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
intron-intron	ENST00000488782	ENST00000536230		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
intron-5UTR	ENST00000488782	ENST00000392282		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
intron-5UTR	ENST00000488782	ENST00000538427		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
intron-5UTR	ENST00000488782	ENST00000367456		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
intron-intron	ENST00000488782	ENST00000461481		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
intron-intron	ENST00000488782	ENST00000286332		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	ACTR3B	chr7	152522207	+	TAB2	chr6	149691045	+
Frame-shit	ENST00000265843	ENST00000525071		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
Frame-shit	ENST00000265843	ENST00000429869		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
Frame-shit	ENST00000265843	ENST00000525815		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
5CDS-intron	ENST00000265843	ENST00000265836		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
5CDS-5UTR	ENST00000265843	ENST00000375682		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000443411	ENST00000525071		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000443411	ENST00000429869		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000443411	ENST00000525815		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-intron	ENST00000443411	ENST00000265836		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-5UTR	ENST00000443411	ENST00000375682		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000428840	ENST00000525071		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000428840	ENST00000429869		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000428840	ENST00000525815		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-intron	ENST00000428840	ENST00000265836		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-5UTR	ENST00000428840	ENST00000375682		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
In-frame	ENST00000525344	ENST00000525071		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
In-frame	ENST00000525344	ENST00000429869		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
In-frame	ENST00000525344	ENST00000525815		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
5CDS-intron	ENST00000525344	ENST00000265836		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
5CDS-5UTR	ENST00000525344	ENST00000375682		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000524840	ENST00000525071		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000524840	ENST00000429869		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000524840	ENST00000525815		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-intron	ENST00000524840	ENST00000265836		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
intron-5UTR	ENST00000524840	ENST00000375682		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	EXPH5	chr11	108464145	-	SLC35F2	chr11	107686691	-
5CDS-intron	ENST00000377604	ENST00000526343		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000377604	ENST00000282441		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000377604	ENST00000537274		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000377604	ENST00000345877		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000377604	ENST00000531439		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000377604	ENST00000524575		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000377604	ENST00000528834		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000526343		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000282441		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000537274		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000345877		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000531439		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000524575		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000329236	ENST00000528834		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000526343		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000282441		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000537274		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000345877		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000531439		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000524575		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
5CDS-intron	ENST00000345781	ENST00000528834		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000526343		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000282441		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000537274		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000345877		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000531439		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000524575		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
intron-intron	ENST00000478410	ENST00000528834		TCGA	LD	BRCA	TCGA-BH-A0AY-01A	RBM10	chrX	47006897	+	YAP1	chr11	102080248	+
Frame-shit	ENST00000310301	ENST00000318698		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
Frame-shit	ENST00000310301	ENST00000566473		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
5CDS-intron	ENST00000310301	ENST00000574292		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
Frame-shit	ENST00000395969	ENST00000318698		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
Frame-shit	ENST00000395969	ENST00000566473		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
5CDS-intron	ENST00000395969	ENST00000574292		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
intron-3CDS	ENST00000466017	ENST00000318698		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
intron-3CDS	ENST00000466017	ENST00000566473		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
intron-intron	ENST00000466017	ENST00000574292		TCGA	LD	BRCA	TCGA-BH-A0AZ-01A	VPS41	chr7	38937691	-	ANKFN1	chr17	54517688	+
intron-5UTR	ENST00000518857	ENST00000388742		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000518857	ENST00000340726		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000518857	ENST00000388740		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000518857	ENST00000303824		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000518857	ENST00000388741		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000518857	ENST00000388743		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-intron	ENST00000518857	ENST00000419131		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000395862	ENST00000388742		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000395862	ENST00000340726		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000395862	ENST00000388740		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000395862	ENST00000303824		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000395862	ENST00000388741		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-5UTR	ENST00000395862	ENST00000388743		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
intron-intron	ENST00000395862	ENST00000419131		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000521514	ENST00000388742		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000521514	ENST00000340726		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000521514	ENST00000388740		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000521514	ENST00000303824		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000521514	ENST00000388741		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000521514	ENST00000388743		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-intron	ENST00000521514	ENST00000419131		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000518738	ENST00000388742		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000518738	ENST00000340726		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000518738	ENST00000388740		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000518738	ENST00000303824		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000518738	ENST00000388741		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-5UTR	ENST00000518738	ENST00000388743		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-intron	ENST00000518738	ENST00000419131		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	ATP6V1C1	chr8	104033453	+	EYA1	chr8	72268746	-
5UTR-3UTR	ENST00000025008	ENST00000531610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
5UTR-3UTR	ENST00000025008	ENST00000289957		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
5UTR-3UTR	ENST00000435644	ENST00000531610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
5UTR-3UTR	ENST00000435644	ENST00000289957		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
5UTR-3UTR	ENST00000521611	ENST00000531610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
5UTR-3UTR	ENST00000521611	ENST00000289957		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
intron-3UTR	ENST00000539297	ENST00000531610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
intron-3UTR	ENST00000539297	ENST00000289957		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	RB1CC1	chr8	53626635	-	CHRNB3	chr8	42563860	+
In-frame	ENST00000309134	ENST00000539261		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
In-frame	ENST00000309134	ENST00000228938		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
Frame-shit	ENST00000534025	ENST00000539261		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
Frame-shit	ENST00000534025	ENST00000228938		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
Frame-shit	ENST00000525069	ENST00000539261		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
Frame-shit	ENST00000525069	ENST00000228938		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
In-frame	ENST00000528117	ENST00000539261		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
In-frame	ENST00000528117	ENST00000228938		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TMEM9B	chr11	8977737	-	MGP	chr12	15035981	-
Frame-shit	ENST00000219476	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000219476	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
Frame-shit	ENST00000382538	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000382538	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
Frame-shit	ENST00000401874	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000401874	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
Frame-shit	ENST00000353929	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000353929	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
Frame-shit	ENST00000439673	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000439673	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
Frame-shit	ENST00000350773	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000350773	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
Frame-shit	ENST00000568454	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
In-frame	ENST00000568454	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
intron-3CDS	ENST00000568366	ENST00000329610		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
intron-3CDS	ENST00000568366	ENST00000566435		TCGA	LD	BRCA	TCGA-BH-A0B1-01A	TSC2	chr16	2100487	+	NPW	chr16	2070191	+
5UTR-3CDS	ENST00000261507	ENST00000393743		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	MSMO1	chr4	166248916	+	DDX60	chr4	169143032	-
5UTR-intron	ENST00000261507	ENST00000505393		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	MSMO1	chr4	166248916	+	DDX60	chr4	169143032	-
5UTR-3CDS	ENST00000393766	ENST00000393743		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	MSMO1	chr4	166248916	+	DDX60	chr4	169143032	-
5UTR-intron	ENST00000393766	ENST00000505393		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	MSMO1	chr4	166248916	+	DDX60	chr4	169143032	-
5UTR-3CDS	ENST00000504317	ENST00000393743		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	MSMO1	chr4	166248916	+	DDX60	chr4	169143032	-
5UTR-intron	ENST00000504317	ENST00000505393		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	MSMO1	chr4	166248916	+	DDX60	chr4	169143032	-
In-frame	ENST00000281394	ENST00000369426		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
In-frame	ENST00000281394	ENST00000235521		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5CDS-5UTR	ENST00000281394	ENST00000537870		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5CDS-intron	ENST00000281394	ENST00000497761		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
In-frame	ENST00000294952	ENST00000369426		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
In-frame	ENST00000294952	ENST00000235521		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5CDS-5UTR	ENST00000294952	ENST00000537870		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5CDS-intron	ENST00000294952	ENST00000497761		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
In-frame	ENST00000449090	ENST00000369426		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
In-frame	ENST00000449090	ENST00000235521		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5CDS-5UTR	ENST00000449090	ENST00000537870		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5CDS-intron	ENST00000449090	ENST00000497761		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
intron-3CDS	ENST00000476199	ENST00000369426		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
intron-3CDS	ENST00000476199	ENST00000235521		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
intron-5UTR	ENST00000476199	ENST00000537870		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
intron-intron	ENST00000476199	ENST00000497761		TCGA	LD	BRCA	TCGA-BH-A0B2-01A	PPP1R21	chr2	48725874	+	WARS2	chr1	119619230	-
5UTR-3CDS	ENST00000373566	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000373566	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-intron	ENST00000373566	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000373563	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000373563	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-intron	ENST00000373563	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000409480	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000409480	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-intron	ENST00000409480	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000409547	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000409547	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-intron	ENST00000409547	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
intron-3CDS	ENST00000409196	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
intron-3CDS	ENST00000409196	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
intron-intron	ENST00000409196	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000409451	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-3CDS	ENST00000409451	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-intron	ENST00000409451	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
3UTR-3CDS	ENST00000482666	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
3UTR-3CDS	ENST00000482666	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
3UTR-intron	ENST00000482666	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
intron-3CDS	ENST00000452341	ENST00000330842		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
intron-3CDS	ENST00000452341	ENST00000409749		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
intron-intron	ENST00000452341	ENST00000469508		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	GIGYF2	chr2	233568199	+	ASB18	chr2	237146599	-
5UTR-intron	ENST00000380345	ENST00000518527		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-intron	ENST00000380345	ENST00000377360		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-intron	ENST00000380345	ENST00000328939		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-intron	ENST00000380345	ENST00000390656		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-5UTR	ENST00000380345	ENST00000520740		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-5UTR	ENST00000380345	ENST00000434108		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-5UTR	ENST00000380345	ENST00000411494		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515007	ENST00000518527		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515007	ENST00000377360		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515007	ENST00000328939		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515007	ENST00000390656		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000515007	ENST00000520740		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000515007	ENST00000434108		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000515007	ENST00000411494		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515349	ENST00000518527		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515349	ENST00000377360		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515349	ENST00000328939		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000515349	ENST00000390656		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000515349	ENST00000520740		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000515349	ENST00000434108		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000515349	ENST00000411494		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	LHFPL2	chr5	77860636	-	KCNIP1	chr5	170145762	+
5UTR-3CDS	ENST00000406961	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
3UTR-3CDS	ENST00000469850	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
5UTR-3CDS	ENST00000405141	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
5UTR-3CDS	ENST00000407230	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
5UTR-3CDS	ENST00000538539	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
intron-3CDS	ENST00000288599	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
intron-3CDS	ENST00000348332	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
intron-3CDS	ENST00000395856	ENST00000274710		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	NCOA1	chr2	24787299	+	PSD2	chr5	139213287	+
5CDS-5UTR	ENST00000274376	ENST00000395044		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000274376	ENST00000265333		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000274376	ENST00000395047		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000274376	ENST00000466080		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000456692	ENST00000395044		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000456692	ENST00000265333		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000456692	ENST00000395047		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000456692	ENST00000466080		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000512763	ENST00000395044		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000512763	ENST00000265333		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000512763	ENST00000395047		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000512763	ENST00000466080		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000506290	ENST00000395044		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000506290	ENST00000265333		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000506290	ENST00000395047		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-5UTR	ENST00000506290	ENST00000466080		TCGA	LD	BRCA	TCGA-BH-A0B3-01A	RASA1	chr5	86665717	+	VDAC1	chr5	133328709	-
5CDS-intron	ENST00000373871	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000373871	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-3UTR	ENST00000373871	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5UTR-intron	ENST00000436342	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5UTR-intron	ENST00000436342	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5UTR-3UTR	ENST00000436342	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
intron-intron	ENST00000373864	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
intron-intron	ENST00000373864	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
intron-3UTR	ENST00000373864	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000540618	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000540618	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-3UTR	ENST00000540618	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000545175	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000545175	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-3UTR	ENST00000545175	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000373863	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000373863	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-3UTR	ENST00000373863	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5UTR-intron	ENST00000471498	ENST00000318074		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5UTR-intron	ENST00000471498	ENST00000543823		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5UTR-3UTR	ENST00000471498	ENST00000490170		TCGA	LD	BRCA	TCGA-BH-A0B4-01A	EYA3	chr1	28362055	-	SYTL1	chr1	27675571	+
5CDS-intron	ENST00000311637	ENST00000492698		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000311637	ENST00000252999		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000311637	ENST00000370692		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000311637	ENST00000370677		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000338821	ENST00000492698		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000338821	ENST00000252999		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000338821	ENST00000370692		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000338821	ENST00000370677		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000402822	ENST00000492698		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000402822	ENST00000252999		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000402822	ENST00000370692		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000402822	ENST00000370677		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
intron-intron	ENST00000477492	ENST00000492698		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
intron-intron	ENST00000477492	ENST00000252999		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
intron-intron	ENST00000477492	ENST00000370692		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
intron-intron	ENST00000477492	ENST00000370677		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ATP9A	chr20	50329505	-	LAMA5	chr20	60937608	-
5UTR-3CDS	ENST00000394071	ENST00000311148		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ELMSAN1	chr14	74253805	-	ACOT1	chr14	74008197	+
5UTR-3CDS	ENST00000394071	ENST00000557556		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ELMSAN1	chr14	74253805	-	ACOT1	chr14	74008197	+
intron-3CDS	ENST00000286523	ENST00000311148		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ELMSAN1	chr14	74253805	-	ACOT1	chr14	74008197	+
intron-3CDS	ENST00000286523	ENST00000557556		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ELMSAN1	chr14	74253805	-	ACOT1	chr14	74008197	+
intron-3CDS	ENST00000486739	ENST00000311148		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ELMSAN1	chr14	74253805	-	ACOT1	chr14	74008197	+
intron-3CDS	ENST00000486739	ENST00000557556		TCGA	LD	BRCA	TCGA-BH-A0B6-01A	ELMSAN1	chr14	74253805	-	ACOT1	chr14	74008197	+
Frame-shit	ENST00000394303	ENST00000209728		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38457080	+
Frame-shit	ENST00000394310	ENST00000209728		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38457080	+
Frame-shit	ENST00000344140	ENST00000209728		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38457080	+
5UTR-3CDS	ENST00000582877	ENST00000209728		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	CDC6	chr17	38457080	+
In-frame	ENST00000394303	ENST00000318008		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000394303	ENST00000433206		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000394303	ENST00000435347		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000394310	ENST00000318008		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000394310	ENST00000433206		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000394310	ENST00000435347		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000344140	ENST00000318008		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000344140	ENST00000433206		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
In-frame	ENST00000344140	ENST00000435347		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
5UTR-3CDS	ENST00000582877	ENST00000318008		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
5UTR-3CDS	ENST00000582877	ENST00000433206		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
5UTR-3CDS	ENST00000582877	ENST00000435347		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	CACNB1	chr17	37351137	-	LASP1	chr17	37054665	+
Frame-shit	ENST00000390268	ENST00000390237		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	IGKV2D-26	chr2	90025314	+	IGKC	chr2	89157194	-
In-frame	ENST00000394126	ENST00000262418		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
5CDS-intron	ENST00000394126	ENST00000471005		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
Frame-shit	ENST00000356271	ENST00000262418		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
5CDS-intron	ENST00000356271	ENST00000471005		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
Frame-shit	ENST00000394128	ENST00000262418		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
5CDS-intron	ENST00000394128	ENST00000471005		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
Frame-shit	ENST00000394127	ENST00000262418		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
5CDS-intron	ENST00000394127	ENST00000471005		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
In-frame	ENST00000501516	ENST00000262418		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
5CDS-intron	ENST00000501516	ENST00000471005		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
intron-3CDS	ENST00000479829	ENST00000262418		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
intron-intron	ENST00000479829	ENST00000471005		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MED24	chr17	38179384	-	SLC4A1	chr17	42328700	-
In-frame	ENST00000377818	ENST00000276603		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MZT1	chr13	73293090	-	TERF1	chr8	73939175	+
In-frame	ENST00000377818	ENST00000276602		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MZT1	chr13	73293090	-	TERF1	chr8	73939175	+
5CDS-intron	ENST00000377818	ENST00000520783		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	MZT1	chr13	73293090	-	TERF1	chr8	73939175	+
Frame-shit	ENST00000579146	ENST00000346872		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000394189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000439167		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000535189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000377944		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000377945		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000377952		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000377958		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000346243		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000350532		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000351680		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000467757		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000579146	ENST00000439016		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000579146	ENST00000583368		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000346872		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000394189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000439167		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000535189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000377944		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000377945		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000377952		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000377958		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000346243		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000350532		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000351680		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000467757		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000300658	ENST00000439016		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000300658	ENST00000583368		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000346872		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000394189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000439167		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000535189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000377944		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000377945		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000377952		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000377958		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000346243		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000350532		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000351680		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000467757		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000378011	ENST00000439016		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-intron	ENST00000378011	ENST00000583368		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000346872		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000394189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000439167		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000535189		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000377944		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000377945		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000377952		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000377958		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000346243		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000350532		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000351680		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000467757		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
Frame-shit	ENST00000429199	ENST00000439016		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000429199	ENST00000583368		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	PGAP3	chr17	37840850	-	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000225430	ENST00000305869		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356731	+	CCL11	chr17	32614115	+
intron-3CDS	ENST00000579374	ENST00000305869		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356731	+	CCL11	chr17	32614115	+
5UTR-3CDS	ENST00000579260	ENST00000305869		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356731	+	CCL11	chr17	32614115	+
5UTR-3CDS	ENST00000582193	ENST00000305869		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	RPL19	chr17	37356731	+	CCL11	chr17	32614115	+
5CDS-5UTR	ENST00000409003	ENST00000520031		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	SAMD12	chr8	119592954	-	FER1L6-AS2	chr8	125073033	-
5CDS-5UTR	ENST00000409003	ENST00000601180		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	SAMD12	chr8	119592954	-	FER1L6-AS2	chr8	125073033	-
5CDS-5UTR	ENST00000314727	ENST00000520031		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	SAMD12	chr8	119592954	-	FER1L6-AS2	chr8	125073033	-
5CDS-5UTR	ENST00000314727	ENST00000601180		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	SAMD12	chr8	119592954	-	FER1L6-AS2	chr8	125073033	-
intron-5UTR	ENST00000527515	ENST00000520031		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	SAMD12	chr8	119592954	-	FER1L6-AS2	chr8	125073033	-
intron-5UTR	ENST00000527515	ENST00000601180		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	SAMD12	chr8	119592954	-	FER1L6-AS2	chr8	125073033	-
5UTR-3CDS	ENST00000343638	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-3CDS	ENST00000343638	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-3CDS	ENST00000343638	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-5UTR	ENST00000343638	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000302904	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000302904	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000302904	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000302904	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-3CDS	ENST00000527034	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-3CDS	ENST00000527034	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-3CDS	ENST00000527034	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-5UTR	ENST00000527034	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000533177	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000533177	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000533177	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000533177	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000436088	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000436088	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000436088	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000436088	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000393606	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000393606	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000393606	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000393606	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000529383	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000529383	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000529383	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000529383	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000526094	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000526094	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000526094	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000526094	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000537550	ENST00000394303		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000537550	ENST00000394310		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000537550	ENST00000344140		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
intron-5UTR	ENST00000537550	ENST00000582877		TCGA	LD	BRCA	TCGA-BH-A0B7-01A	UBTF	chr17	42298108	-	CACNB1	chr17	37351223	-
5UTR-3CDS	ENST00000272647	ENST00000357702		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	AMMECR1L	chr2	128641777	-	SAP130	chr2	128712918	-
5UTR-3CDS	ENST00000272647	ENST00000259235		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	AMMECR1L	chr2	128641777	-	SAP130	chr2	128712918	-
5UTR-3CDS	ENST00000272647	ENST00000259234		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	AMMECR1L	chr2	128641777	-	SAP130	chr2	128712918	-
5UTR-3CDS	ENST00000393001	ENST00000357702		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	AMMECR1L	chr2	128641777	-	SAP130	chr2	128712918	-
5UTR-3CDS	ENST00000393001	ENST00000259235		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	AMMECR1L	chr2	128641777	-	SAP130	chr2	128712918	-
5UTR-3CDS	ENST00000393001	ENST00000259234		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	AMMECR1L	chr2	128641777	-	SAP130	chr2	128712918	-
Frame-shit	ENST00000426335	ENST00000395290		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000426335	ENST00000358597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000426335	ENST00000395292		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000426335	ENST00000310513		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000426335	ENST00000361904		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5CDS-intron	ENST00000426335	ENST00000539455		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5CDS-intron	ENST00000426335	ENST00000531165		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5CDS-intron	ENST00000426335	ENST00000532048		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000524782	ENST00000395290		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000524782	ENST00000358597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000524782	ENST00000395292		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000524782	ENST00000310513		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
Frame-shit	ENST00000524782	ENST00000361904		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5CDS-intron	ENST00000524782	ENST00000539455		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5CDS-intron	ENST00000524782	ENST00000531165		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5CDS-intron	ENST00000524782	ENST00000532048		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000395449	ENST00000395290		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000395449	ENST00000358597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000395449	ENST00000395292		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000395449	ENST00000310513		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000395449	ENST00000361904		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000395449	ENST00000539455		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000395449	ENST00000531165		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000395449	ENST00000532048		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000319543	ENST00000395290		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000319543	ENST00000358597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000319543	ENST00000395292		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000319543	ENST00000310513		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000319543	ENST00000361904		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000319543	ENST00000539455		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000319543	ENST00000531165		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000319543	ENST00000532048		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000419701	ENST00000395290		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000419701	ENST00000358597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000419701	ENST00000395292		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000419701	ENST00000310513		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-3CDS	ENST00000419701	ENST00000361904		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000419701	ENST00000539455		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000419701	ENST00000531165		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
5UTR-intron	ENST00000419701	ENST00000532048		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ARFGAP2	chr11	47198067	-	CELF1	chr11	47508793	-
intron-5UTR	ENST00000356654	ENST00000433346		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
intron-3UTR	ENST00000356654	ENST00000449039		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000356654	ENST00000007969		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000356654	ENST00000323702		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000356654	ENST00000443597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000356654	ENST00000436789		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
intron-intron	ENST00000356654	ENST00000429740		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-5UTR	ENST00000396684	ENST00000433346		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-3UTR	ENST00000396684	ENST00000449039		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-5UTR	ENST00000396684	ENST00000007969		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-5UTR	ENST00000396684	ENST00000323702		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-5UTR	ENST00000396684	ENST00000443597		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-5UTR	ENST00000396684	ENST00000436789		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
5UTR-intron	ENST00000396684	ENST00000429740		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ATN1	chr12	7037547	+	LRRC23	chr12	7014749	+
In-frame	ENST00000294244	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
In-frame	ENST00000294244	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000294244	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000294244	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000294244	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000294244	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000294244	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000294244	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	C11orf84	chr11	63586474	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000264993	ENST00000514529		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000264993	ENST00000321871		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000264993	ENST00000393130		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000264993	ENST00000508711		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000264993	ENST00000515826		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000431519	ENST00000514529		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000431519	ENST00000321871		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000431519	ENST00000393130		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000431519	ENST00000508711		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000431519	ENST00000515826		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000508481	ENST00000514529		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000508481	ENST00000321871		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000508481	ENST00000393130		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000508481	ENST00000508711		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000508481	ENST00000515826		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000420115	ENST00000514529		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000420115	ENST00000321871		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000420115	ENST00000393130		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000420115	ENST00000508711		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000420115	ENST00000515826		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000511392	ENST00000514529		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000511392	ENST00000321871		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000511392	ENST00000393130		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000511392	ENST00000508711		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000511392	ENST00000515826		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000515421	ENST00000514529		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000515421	ENST00000321871		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000515421	ENST00000393130		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000515421	ENST00000508711		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000515421	ENST00000515826		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CDV3	chr3	133293959	+	TMEM108	chr3	133098596	+
5CDS-intron	ENST00000294053	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000294053	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000294053	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000294053	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000294053	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000538039	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000538039	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000538039	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000538039	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000538039	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000437826	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000437826	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000437826	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000437826	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000437826	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000340729	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000340729	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000340729	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000340729	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000340729	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000543042	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000543042	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000543042	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000543042	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000543042	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000445069	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000445069	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000445069	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000445069	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000445069	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000538021	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000538021	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000538021	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000538021	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000538021	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000542555	ENST00000543304		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000542555	ENST00000334805		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000542555	ENST00000538536		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000542555	ENST00000538437		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
intron-intron	ENST00000542555	ENST00000545082		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CLPB	chr11	72091325	-	STARD10	chr11	72504969	-
Frame-shit	ENST00000369878	ENST00000369902		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000369878	ENST00000369899		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000369878	ENST00000423559		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
5CDS-intron	ENST00000369878	ENST00000471000		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000433628	ENST00000369902		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000433628	ENST00000369899		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000433628	ENST00000423559		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
5CDS-intron	ENST00000433628	ENST00000471000		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000369875	ENST00000369902		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000369875	ENST00000369899		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000369875	ENST00000423559		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
5CDS-intron	ENST00000369875	ENST00000471000		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
intron-3CDS	ENST00000475511	ENST00000369902		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
intron-3CDS	ENST00000475511	ENST00000369899		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
intron-3CDS	ENST00000475511	ENST00000423559		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
intron-intron	ENST00000475511	ENST00000471000		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	CNNM2	chr10	104679858	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000263026	ENST00000268379		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EEF2K	chr16	22276201	+	UQCRC2	chr16	21982846	+
Frame-shit	ENST00000263026	ENST00000561553		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EEF2K	chr16	22276201	+	UQCRC2	chr16	21982846	+
intron-3CDS	ENST00000561791	ENST00000268379		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EEF2K	chr16	22276201	+	UQCRC2	chr16	21982846	+
intron-3CDS	ENST00000561791	ENST00000561553		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EEF2K	chr16	22276201	+	UQCRC2	chr16	21982846	+
intron-3CDS	ENST00000527001	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
intron-intron	ENST00000527001	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000257831	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000257831	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000450654	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000450654	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000530286	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000530286	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000533754	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000533754	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000531728	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000531728	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000531794	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000531794	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
In-frame	ENST00000527935	ENST00000241052		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000527935	ENST00000534710		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EHF	chr11	34668231	+	CAT	chr11	34485652	+
5CDS-intron	ENST00000300255	ENST00000399786		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-intron	ENST00000300255	ENST00000339944		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-3UTR	ENST00000300255	ENST00000497833		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-3UTR	ENST00000300255	ENST00000399784		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-3UTR	ENST00000300255	ENST00000303645		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
intron-intron	ENST00000401402	ENST00000399786		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
intron-intron	ENST00000401402	ENST00000339944		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
intron-3UTR	ENST00000401402	ENST00000497833		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
intron-3UTR	ENST00000401402	ENST00000399784		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
intron-3UTR	ENST00000401402	ENST00000303645		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-intron	ENST00000382699	ENST00000399786		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-intron	ENST00000382699	ENST00000339944		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-3UTR	ENST00000382699	ENST00000497833		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-3UTR	ENST00000382699	ENST00000399784		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
5CDS-3UTR	ENST00000382699	ENST00000303645		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
3UTR-intron	ENST00000485488	ENST00000399786		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
3UTR-intron	ENST00000485488	ENST00000339944		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
3UTR-3UTR	ENST00000485488	ENST00000497833		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
3UTR-3UTR	ENST00000485488	ENST00000399784		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
3UTR-3UTR	ENST00000485488	ENST00000303645		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	EVA1C	chr21	33867480	+	MRAP	chr21	33683995	+
In-frame	ENST00000373548	ENST00000373625		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5CDS-5UTR	ENST00000373548	ENST00000537234		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5CDS-3UTR	ENST00000373548	ENST00000469790		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5CDS-3UTR	ENST00000373548	ENST00000545542		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5UTR-3CDS	ENST00000373541	ENST00000373625		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5UTR-5UTR	ENST00000373541	ENST00000537234		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000373541	ENST00000469790		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000373541	ENST00000545542		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
intron-3CDS	ENST00000490081	ENST00000373625		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
intron-5UTR	ENST00000490081	ENST00000537234		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
intron-3UTR	ENST00000490081	ENST00000469790		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
intron-3UTR	ENST00000490081	ENST00000545542		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	HDAC1	chr1	32790154	+	KPNA6	chr1	32620189	+
Frame-shit	ENST00000297591	ENST00000348628		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
5CDS-5UTR	ENST00000297591	ENST00000351010		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
5CDS-5UTR	ENST00000297591	ENST00000398376		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
Frame-shit	ENST00000437199	ENST00000348628		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
5CDS-5UTR	ENST00000437199	ENST00000351010		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
5CDS-5UTR	ENST00000437199	ENST00000398376		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
Frame-shit	ENST00000421249	ENST00000348628		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
5CDS-5UTR	ENST00000421249	ENST00000351010		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
5CDS-5UTR	ENST00000421249	ENST00000398376		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
intron-3CDS	ENST00000523405	ENST00000348628		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
intron-5UTR	ENST00000523405	ENST00000351010		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
intron-5UTR	ENST00000523405	ENST00000398376		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	KIAA1429	chr8	95541298	-	CAMK2A	chr5	149602276	-
Frame-shit	ENST00000555577	ENST00000370854		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
Frame-shit	ENST00000555577	ENST00000393760		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000555577	ENST00000370846		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000555577	ENST00000352634		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000555577	ENST00000353979		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000555577	ENST00000370842		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000555577	ENST00000345745		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-3UTR	ENST00000555577	ENST00000495735		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
Frame-shit	ENST00000370649	ENST00000370854		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
Frame-shit	ENST00000370649	ENST00000393760		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370649	ENST00000370846		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370649	ENST00000352634		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370649	ENST00000353979		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370649	ENST00000370842		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370649	ENST00000345745		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-3UTR	ENST00000370649	ENST00000495735		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
In-frame	ENST00000370631	ENST00000370854		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
In-frame	ENST00000370631	ENST00000393760		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370631	ENST00000370846		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370631	ENST00000352634		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370631	ENST00000353979		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370631	ENST00000370842		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-intron	ENST00000370631	ENST00000345745		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-3UTR	ENST00000370631	ENST00000495735		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PI4K2A	chr10	99433492	+	ZDHHC16	chr10	99213375	+
5CDS-5UTR	ENST00000409426	ENST00000368921		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PIP5K1A	chr1	151171557	+	MLLT11	chr1	151039695	+
5CDS-5UTR	ENST00000441902	ENST00000368921		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PIP5K1A	chr1	151171557	+	MLLT11	chr1	151039695	+
5CDS-5UTR	ENST00000368890	ENST00000368921		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PIP5K1A	chr1	151171557	+	MLLT11	chr1	151039695	+
5CDS-5UTR	ENST00000368888	ENST00000368921		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PIP5K1A	chr1	151171557	+	MLLT11	chr1	151039695	+
intron-5UTR	ENST00000464105	ENST00000368921		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PIP5K1A	chr1	151171557	+	MLLT11	chr1	151039695	+
intron-5UTR	ENST00000414290	ENST00000368921		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PIP5K1A	chr1	151171557	+	MLLT11	chr1	151039695	+
Frame-shit	ENST00000216962	ENST00000354989		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
Frame-shit	ENST00000216962	ENST00000360031		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
Frame-shit	ENST00000216962	ENST00000376652		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
Frame-shit	ENST00000216962	ENST00000433259		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
5CDS-intron	ENST00000216962	ENST00000485936		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
3UTR-3CDS	ENST00000471359	ENST00000354989		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
3UTR-3CDS	ENST00000471359	ENST00000360031		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
3UTR-3CDS	ENST00000471359	ENST00000376652		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
3UTR-3CDS	ENST00000471359	ENST00000433259		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
3UTR-intron	ENST00000471359	ENST00000485936		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	PYGB	chr20	25277085	+	ENTPD6	chr20	25193899	+
In-frame	ENST00000356208	ENST00000371263		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
In-frame	ENST00000356208	ENST00000345868		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
In-frame	ENST00000356208	ENST00000371260		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
intron-3CDS	ENST00000440234	ENST00000371263		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
intron-3CDS	ENST00000440234	ENST00000345868		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
intron-3CDS	ENST00000440234	ENST00000371260		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
In-frame	ENST00000371219	ENST00000371263		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
In-frame	ENST00000371219	ENST00000345868		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
In-frame	ENST00000371219	ENST00000371260		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RBM38	chr20	55968389	+	SPO11	chr20	55917785	+
5CDS-intron	ENST00000432519	ENST00000250863		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RFTN1	chr3	16368280	-	DAZL	chr3	16646818	-
5CDS-5UTR	ENST00000432519	ENST00000399444		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RFTN1	chr3	16368280	-	DAZL	chr3	16646818	-
5CDS-intron	ENST00000334133	ENST00000250863		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RFTN1	chr3	16368280	-	DAZL	chr3	16646818	-
5CDS-5UTR	ENST00000334133	ENST00000399444		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RFTN1	chr3	16368280	-	DAZL	chr3	16646818	-
5UTR-intron	ENST00000483671	ENST00000250863		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RFTN1	chr3	16368280	-	DAZL	chr3	16646818	-
5UTR-5UTR	ENST00000483671	ENST00000399444		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	RFTN1	chr3	16368280	-	DAZL	chr3	16646818	-
intron-3CDS	ENST00000578868	ENST00000543245		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000578868	ENST00000356839		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000578868	ENST00000350303		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-intron	ENST00000578868	ENST00000581562		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000321337	ENST00000543245		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000321337	ENST00000356839		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000321337	ENST00000350303		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-intron	ENST00000321337	ENST00000581562		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000429205	ENST00000543245		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000429205	ENST00000356839		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-3CDS	ENST00000429205	ENST00000350303		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
intron-intron	ENST00000429205	ENST00000581562		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	SENP3	chr17	7467907	+	ACADVL	chr17	7127686	+
3UTR-3CDS	ENST00000565677	ENST00000262305		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
3UTR-3CDS	ENST00000565677	ENST00000457159		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
3UTR-3CDS	ENST00000565677	ENST00000450428		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
3UTR-3CDS	ENST00000219548	ENST00000262305		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
3UTR-3CDS	ENST00000219548	ENST00000457159		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
3UTR-3CDS	ENST00000219548	ENST00000450428		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
intron-3CDS	ENST00000564370	ENST00000262305		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
intron-3CDS	ENST00000564370	ENST00000457159		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
intron-3CDS	ENST00000564370	ENST00000450428		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
intron-3CDS	ENST00000566181	ENST00000262305		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
intron-3CDS	ENST00000566181	ENST00000457159		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
intron-3CDS	ENST00000566181	ENST00000450428		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	STUB1	chr16	732682	+	RAB11FIP3	chr16	555524	+
5CDS-intron	ENST00000376387	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
5CDS-intron	ENST00000376387	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
5CDS-intron	ENST00000376387	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
5CDS-intron	ENST00000376387	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
intron-intron	ENST00000463709	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
intron-intron	ENST00000463709	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
intron-intron	ENST00000463709	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
intron-intron	ENST00000463709	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	TM9SF2	chr13	100154031	+	MTUS2	chr13	29413915	+
5UTR-3CDS	ENST00000469100	ENST00000420022		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	YARS	chr1	33246649	-	ADM5	chr19	50193147	+
Frame-shit	ENST00000373477	ENST00000420022		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	YARS	chr1	33246649	-	ADM5	chr19	50193147	+
5CDS-5UTR	ENST00000355202	ENST00000601953		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ZNF607	chr19	38198815	-	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000355202	ENST00000328867		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ZNF607	chr19	38198815	-	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000395835	ENST00000601953		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ZNF607	chr19	38198815	-	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000395835	ENST00000328867		TCGA	LD	BRCA	TCGA-BH-A0B9-01A	ZNF607	chr19	38198815	-	CAPN12	chr19	39233168	-
5CDS-intron	ENST00000533244	ENST00000398645		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000533244	ENST00000529006		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000533244	ENST00000526258		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000533244	ENST00000308783		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000533244	ENST00000530342		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000310190	ENST00000398645		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000310190	ENST00000529006		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000310190	ENST00000526258		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000310190	ENST00000308783		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
5CDS-intron	ENST00000310190	ENST00000530342		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	CCS	chr11	66368020	+	KDM2A	chr11	66916526	+
intron-3CDS	ENST00000542515	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	ORAOV1	chr11	69482663	-	RNF169	chr11	74545721	+
Frame-shit	ENST00000279147	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	ORAOV1	chr11	69482663	-	RNF169	chr11	74545721	+
Frame-shit	ENST00000536870	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	ORAOV1	chr11	69482663	-	RNF169	chr11	74545721	+
In-frame	ENST00000535657	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	ORAOV1	chr11	69482663	-	RNF169	chr11	74545721	+
intron-3CDS	ENST00000539414	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	ORAOV1	chr11	69482663	-	RNF169	chr11	74545721	+
intron-3CDS	ENST00000542341	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	ORAOV1	chr11	69482663	-	RNF169	chr11	74545721	+
In-frame	ENST00000356136	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000356136	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
In-frame	ENST00000528420	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000528420	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
In-frame	ENST00000533454	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000533454	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
In-frame	ENST00000531818	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000531818	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
In-frame	ENST00000532130	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000532130	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
In-frame	ENST00000539288	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000539288	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000525872	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000525872	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000538870	ENST00000353172		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000538870	ENST00000533144		TCGA	LD	BRCA	TCGA-BH-A0BD-01A	UVRAG	chr11	75776832	+	KCTD14	chr11	77728316	-
Frame-shit	ENST00000411948	ENST00000355875		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
Frame-shit	ENST00000411948	ENST00000366541		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
Frame-shit	ENST00000411948	ENST00000343783		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000411948	ENST00000391846		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000411948	ENST00000496361		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
Frame-shit	ENST00000366528	ENST00000355875		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
Frame-shit	ENST00000366528	ENST00000366541		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
Frame-shit	ENST00000366528	ENST00000343783		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000366528	ENST00000391846		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000366528	ENST00000496361		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
3UTR-3CDS	ENST00000498262	ENST00000355875		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
3UTR-3CDS	ENST00000498262	ENST00000366541		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
3UTR-3CDS	ENST00000498262	ENST00000343783		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
3UTR-intron	ENST00000498262	ENST00000391846		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
3UTR-intron	ENST00000498262	ENST00000496361		TCGA	LD	BRCA	TCGA-BH-A0BF-01A	COX20	chr1	245005560	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000397661	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000592199	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000587760	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000585575	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000360105	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000588228	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000587260	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
In-frame	ENST00000358552	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
intron-3CDS	ENST00000588680	ENST00000378623		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	NFIX	chr19	13136366	+	LRP4	chr11	46924480	-
5CDS-intron	ENST00000257821	ENST00000581852		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000403303		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000383096		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000300227		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000579916		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000406524		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000583930		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000402325		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000579947		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000257821	ENST00000583550		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000581852		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000403303		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000383096		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000300227		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000579916		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000406524		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000583930		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000402325		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000579947		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000323180	ENST00000583550		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000581852		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000403303		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000383096		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000300227		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000579916		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000406524		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000583930		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000402325		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000579947		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
5CDS-intron	ENST00000418153	ENST00000583550		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000581852		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000403303		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000383096		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000300227		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000579916		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000406524		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000583930		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000402325		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000579947		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
intron-intron	ENST00000527753	ENST00000583550		TCGA	LD	BRCA	TCGA-BH-A0BG-01A	PHF21A	chr11	46098305	-	CCDC178	chr18	30847261	-
In-frame	ENST00000261405	ENST00000359301		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000251038		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000302216		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000556945		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000557607		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000555755		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000393514		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
In-frame	ENST00000261405	ENST00000336693		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
5CDS-3UTR	ENST00000261405	ENST00000557605		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
5CDS-intron	ENST00000261405	ENST00000318308		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
5CDS-intron	ENST00000261405	ENST00000555900		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
5CDS-intron	ENST00000261405	ENST00000406216		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000359301		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000251038		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000302216		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000556945		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000557607		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000555755		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000393514		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000572068	ENST00000336693		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3UTR	ENST00000572068	ENST00000557605		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-intron	ENST00000572068	ENST00000318308		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-intron	ENST00000572068	ENST00000555900		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-intron	ENST00000572068	ENST00000406216		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000359301		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000251038		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000302216		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000556945		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000557607		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000555755		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000393514		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3CDS	ENST00000545906	ENST00000336693		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-3UTR	ENST00000545906	ENST00000557605		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-intron	ENST00000545906	ENST00000318308		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-intron	ENST00000545906	ENST00000555900		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
intron-intron	ENST00000545906	ENST00000406216		TCGA	LD	BRCA	TCGA-BH-A0BJ-01A	VWF	chr12	6204626	-	ZC3H14	chr14	89041037	+
5UTR-5UTR	ENST00000291572	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-intron	ENST00000291572	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-intron	ENST00000291572	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-5UTR	ENST00000398061	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-intron	ENST00000398061	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-intron	ENST00000398061	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-5UTR	ENST00000327505	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-intron	ENST00000327505	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
5UTR-intron	ENST00000327505	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-5UTR	ENST00000398063	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000398063	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000398063	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-5UTR	ENST00000398058	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000398058	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000398058	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-5UTR	ENST00000546158	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000546158	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000546158	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-5UTR	ENST00000479117	ENST00000598742		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000479117	ENST00000221975		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
intron-intron	ENST00000479117	ENST00000593863		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	AGPAT3	chr21	45323900	+	RPS19	chr19	42364204	+
In-frame	ENST00000356956	ENST00000275300		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160431817	+	SLC22A3	chr6	160819011	+
In-frame	ENST00000356956	ENST00000392145		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160431817	+	SLC22A3	chr6	160819011	+
intron-3CDS	ENST00000475584	ENST00000275300		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160431817	+	SLC22A3	chr6	160819011	+
intron-3CDS	ENST00000475584	ENST00000392145		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	IGF2R	chr6	160431817	+	SLC22A3	chr6	160819011	+
In-frame	ENST00000607273	ENST00000244728		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
In-frame	ENST00000607273	ENST00000370819		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
In-frame	ENST00000607273	ENST00000535941		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
In-frame	ENST00000607273	ENST00000370808		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
5CDS-5UTR	ENST00000607273	ENST00000467045		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
3UTR-3CDS	ENST00000389488	ENST00000244728		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
3UTR-3CDS	ENST00000389488	ENST00000370819		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
3UTR-3CDS	ENST00000389488	ENST00000535941		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
3UTR-3CDS	ENST00000389488	ENST00000370808		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
3UTR-5UTR	ENST00000389488	ENST00000467045		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	PRIM2	chr6	57246966	+	COL21A1	chr6	55929420	-
Frame-shit	ENST00000452898	ENST00000343053		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	RASA2	chr3	141278837	+	NELFB	chr9	140157489	+
Frame-shit	ENST00000286364	ENST00000343053		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	RASA2	chr3	141278837	+	NELFB	chr9	140157489	+
intron-3CDS	ENST00000509118	ENST00000343053		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	RASA2	chr3	141278837	+	NELFB	chr9	140157489	+
intron-3CDS	ENST00000555245	ENST00000322564		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	SLC39A9	chr14	69866182	+	PLEKHD1	chr14	69966832	+
Frame-shit	ENST00000556605	ENST00000322564		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	SLC39A9	chr14	69866182	+	PLEKHD1	chr14	69966832	+
Frame-shit	ENST00000336643	ENST00000322564		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	SLC39A9	chr14	69866182	+	PLEKHD1	chr14	69966832	+
Frame-shit	ENST00000031146	ENST00000322564		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	SLC39A9	chr14	69866182	+	PLEKHD1	chr14	69966832	+
Frame-shit	ENST00000557046	ENST00000322564		TCGA	LD	BRCA	TCGA-BH-A0BL-01A	SLC39A9	chr14	69866182	+	PLEKHD1	chr14	69966832	+
Frame-shit	ENST00000268070	ENST00000409494		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA13	chr5	140358534	+
Frame-shit	ENST00000268070	ENST00000289272		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000559976	ENST00000409494		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000559976	ENST00000289272		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHA13	chr5	140358534	+
Frame-shit	ENST00000268070	ENST00000253807		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHAC1	chr5	140358534	+
5CDS-intron	ENST00000268070	ENST00000409700		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000559976	ENST00000253807		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000559976	ENST00000409700		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHAC1	chr5	140358534	+
Frame-shit	ENST00000268070	ENST00000289269		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHAC2	chr5	140358534	+
intron-3CDS	ENST00000559976	ENST00000289269		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ADAMTS17	chr15	100871094	-	PCDHAC2	chr5	140358534	+
Frame-shit	ENST00000358791	ENST00000417961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000358791	ENST00000361573		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000358791	ENST00000541138		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000358791	ENST00000539601		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
5CDS-intron	ENST00000358791	ENST00000490250		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000262591	ENST00000417961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000262591	ENST00000361573		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000262591	ENST00000541138		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000262591	ENST00000539601		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
5CDS-intron	ENST00000262591	ENST00000490250		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000371608	ENST00000417961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000371608	ENST00000361573		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000371608	ENST00000541138		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000371608	ENST00000539601		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
5CDS-intron	ENST00000371608	ENST00000490250		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000609336	ENST00000417961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000609336	ENST00000361573		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000609336	ENST00000541138		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
Frame-shit	ENST00000609336	ENST00000539601		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
5CDS-intron	ENST00000609336	ENST00000490250		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
3UTR-3CDS	ENST00000485049	ENST00000417961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
3UTR-3CDS	ENST00000485049	ENST00000361573		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
3UTR-3CDS	ENST00000485049	ENST00000541138		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
3UTR-3CDS	ENST00000485049	ENST00000539601		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
3UTR-intron	ENST00000485049	ENST00000490250		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	BCAS4	chr20	49446917	+	SLC9A8	chr20	48494518	+
intron-3CDS	ENST00000483873	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000483873	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000483873	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000483873	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000483873	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
In-frame	ENST00000372146	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
In-frame	ENST00000372146	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
In-frame	ENST00000372146	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
In-frame	ENST00000372146	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
In-frame	ENST00000372146	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	GTF3C4	chr9	135559080	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000558879	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-3CDS	ENST00000558879	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000558879	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000558879	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000558879	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000558879	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000558879	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000558879	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000301981	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000301981	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000301981	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000301981	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000301981	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000301981	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000301981	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000301981	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-3CDS	ENST00000422500	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-3CDS	ENST00000422500	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000422500	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000422500	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000422500	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000422500	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000422500	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000422500	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-3CDS	ENST00000442993	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-3CDS	ENST00000442993	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-intron	ENST00000442993	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-intron	ENST00000442993	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-intron	ENST00000442993	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-intron	ENST00000442993	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-intron	ENST00000442993	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
3UTR-intron	ENST00000442993	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000447360	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000447360	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000447360	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000447360	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000447360	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000447360	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000447360	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000447360	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-3CDS	ENST00000331450	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-3CDS	ENST00000331450	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000331450	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000331450	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000331450	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000331450	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000331450	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
intron-intron	ENST00000331450	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000559399	ENST00000453228		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000559399	ENST00000354410		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000559399	ENST00000558856		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000559399	ENST00000558812		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000559399	ENST00000338042		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000559399	ENST00000557785		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000559399	ENST00000449277		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
5CDS-intron	ENST00000559399	ENST00000557942		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	LRRC28	chr15	99874334	+	MEF2A	chr15	100185766	+
Frame-shit	ENST00000541222	ENST00000221486		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAD23A	chr19	13060222	+	RNASEH2A	chr19	12917822	+
Frame-shit	ENST00000316856	ENST00000221486		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAD23A	chr19	13060222	+	RNASEH2A	chr19	12917822	+
Frame-shit	ENST00000586534	ENST00000221486		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAD23A	chr19	13060222	+	RNASEH2A	chr19	12917822	+
Frame-shit	ENST00000592268	ENST00000221486		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAD23A	chr19	13060222	+	RNASEH2A	chr19	12917822	+
3UTR-3CDS	ENST00000588826	ENST00000221486		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAD23A	chr19	13060222	+	RNASEH2A	chr19	12917822	+
Frame-shit	ENST00000404910	ENST00000410032		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000404910	ENST00000264605		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-3UTR	ENST00000404910	ENST00000445024		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000404910	ENST00000468178		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000404910	ENST00000338530		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000404910	ENST00000409373		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000254661	ENST00000410032		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000254661	ENST00000264605		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-3UTR	ENST00000254661	ENST00000445024		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000254661	ENST00000468178		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000254661	ENST00000338530		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000254661	ENST00000409373		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000409726	ENST00000410032		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000409726	ENST00000264605		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-3UTR	ENST00000409726	ENST00000445024		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000409726	ENST00000468178		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000409726	ENST00000338530		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000409726	ENST00000409373		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000403885	ENST00000410032		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
Frame-shit	ENST00000403885	ENST00000264605		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-3UTR	ENST00000403885	ENST00000445024		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000403885	ENST00000468178		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000403885	ENST00000338530		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000403885	ENST00000409373		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	RAMP1	chr2	238820242	+	MLPH	chr2	238455249	+
5CDS-intron	ENST00000601488	ENST00000558331		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000601488	ENST00000251363		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000601488	ENST00000559450		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000601488	ENST00000559336		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000601488	ENST00000595722		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
intron-intron	ENST00000305232	ENST00000558331		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
intron-5UTR	ENST00000305232	ENST00000251363		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
intron-5UTR	ENST00000305232	ENST00000559450		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
intron-5UTR	ENST00000305232	ENST00000559336		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
intron-intron	ENST00000305232	ENST00000595722		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000337491	ENST00000558331		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000337491	ENST00000251363		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000337491	ENST00000559450		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000337491	ENST00000559336		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000337491	ENST00000595722		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000381935	ENST00000558331		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000381935	ENST00000251363		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000381935	ENST00000559450		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000381935	ENST00000559336		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000381935	ENST00000595722		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000594279	ENST00000558331		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000594279	ENST00000251363		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000594279	ENST00000559450		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000594279	ENST00000559336		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
5CDS-intron	ENST00000594279	ENST00000595722		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	SIRT6	chr19	4175677	-	CERS4	chr19	8315960	+
In-frame	ENST00000264818	ENST00000264554		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	TYK2	chr19	10468440	-	SHC2	chr19	430747	-
In-frame	ENST00000524462	ENST00000264554		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	TYK2	chr19	10468440	-	SHC2	chr19	430747	-
In-frame	ENST00000525621	ENST00000264554		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	TYK2	chr19	10468440	-	SHC2	chr19	430747	-
intron-3CDS	ENST00000529370	ENST00000264554		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	TYK2	chr19	10468440	-	SHC2	chr19	430747	-
intron-3CDS	ENST00000529422	ENST00000264554		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	TYK2	chr19	10468440	-	SHC2	chr19	430747	-
Frame-shit	ENST00000394275	ENST00000545111		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
Frame-shit	ENST00000394275	ENST00000394232		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
5CDS-intron	ENST00000394275	ENST00000557291		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
5CDS-intron	ENST00000394275	ENST00000330276		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
Frame-shit	ENST00000418476	ENST00000545111		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
Frame-shit	ENST00000418476	ENST00000394232		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
5CDS-intron	ENST00000418476	ENST00000557291		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
5CDS-intron	ENST00000418476	ENST00000330276		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
In-frame	ENST00000553671	ENST00000545111		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
In-frame	ENST00000553671	ENST00000394232		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
5CDS-intron	ENST00000553671	ENST00000557291		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
5CDS-intron	ENST00000553671	ENST00000330276		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	UNC45A	chr15	91486312	+	SV2B	chr15	91809812	+
Frame-shit	ENST00000354590	ENST00000262961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000354590	ENST00000591965		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000354590	ENST00000439086		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000354590	ENST00000592398		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000354590	ENST00000591712		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
Frame-shit	ENST00000594051	ENST00000262961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000594051	ENST00000591965		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000594051	ENST00000439086		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000594051	ENST00000592398		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000594051	ENST00000591712		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
Frame-shit	ENST00000600990	ENST00000262961		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000600990	ENST00000591965		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000600990	ENST00000439086		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000600990	ENST00000592398		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000600990	ENST00000591712		TCGA	LD	BRCA	TCGA-BH-A0BP-01A	ZBTB45	chr19	59027762	-	ZFR2	chr19	3823401	-
Frame-shit	ENST00000598884	ENST00000437152		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6754943	-
Frame-shit	ENST00000598884	ENST00000245908		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6754943	-
5CDS-intron	ENST00000598884	ENST00000599563		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6754943	-
Frame-shit	ENST00000301457	ENST00000437152		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6754943	-
Frame-shit	ENST00000301457	ENST00000245908		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6754943	-
5CDS-intron	ENST00000301457	ENST00000599563		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	NDUFA7	chr19	8381380	-	SH2D3A	chr19	6754943	-
5CDS-intron	ENST00000306735	ENST00000269601		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000306735	ENST00000585474		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000306735	ENST00000588162		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-5UTR	ENST00000306735	ENST00000592957		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000306735	ENST00000592837		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000306735	ENST00000591711		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000306735	ENST00000589926		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-intron	ENST00000586847	ENST00000269601		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-intron	ENST00000586847	ENST00000585474		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-intron	ENST00000586847	ENST00000588162		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-5UTR	ENST00000586847	ENST00000592957		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-intron	ENST00000586847	ENST00000592837		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-intron	ENST00000586847	ENST00000591711		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
intron-intron	ENST00000586847	ENST00000589926		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000262197	ENST00000269601		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000262197	ENST00000585474		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000262197	ENST00000588162		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-5UTR	ENST00000262197	ENST00000592957		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000262197	ENST00000592837		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000262197	ENST00000591711		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5CDS-intron	ENST00000262197	ENST00000589926		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	RBFA	chr18	77798617	+	TXNL4A	chr18	77790577	-
5UTR-3CDS	ENST00000357421	ENST00000395065		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	SLC25A53	chrX	103401559	-	NXF3	chrX	102339423	-
5UTR-5UTR	ENST00000357421	ENST00000425644		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	SLC25A53	chrX	103401559	-	NXF3	chrX	102339423	-
5UTR-5UTR	ENST00000357421	ENST00000425463		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	SLC25A53	chrX	103401559	-	NXF3	chrX	102339423	-
5UTR-3CDS	ENST00000467290	ENST00000395065		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	SLC25A53	chrX	103401559	-	NXF3	chrX	102339423	-
5UTR-5UTR	ENST00000467290	ENST00000425644		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	SLC25A53	chrX	103401559	-	NXF3	chrX	102339423	-
5UTR-5UTR	ENST00000467290	ENST00000425463		TCGA	LD	BRCA	TCGA-BH-A0BR-01A	SLC25A53	chrX	103401559	-	NXF3	chrX	102339423	-
Frame-shit	ENST00000504595	ENST00000306320		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
Frame-shit	ENST00000504595	ENST00000399793		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
5CDS-intron	ENST00000504595	ENST00000509048		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
intron-3CDS	ENST00000510662	ENST00000306320		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
intron-3CDS	ENST00000510662	ENST00000399793		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
intron-intron	ENST00000510662	ENST00000509048		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
intron-3CDS	ENST00000329673	ENST00000306320		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
intron-3CDS	ENST00000329673	ENST00000399793		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
intron-intron	ENST00000329673	ENST00000509048		TCGA	LD	BRCA	TCGA-BH-A0BS-01A	FBXL7	chr5	15500822	+	FAM134B	chr5	16483581	-
5UTR-3CDS	ENST00000599879	ENST00000598884		TCGA	LD	BRCA	TCGA-BH-A0BT-01A	ZNF98	chr19	22715141	-	NDUFA7	chr19	8376479	-
5UTR-3CDS	ENST00000599879	ENST00000301457		TCGA	LD	BRCA	TCGA-BH-A0BT-01A	ZNF98	chr19	22715141	-	NDUFA7	chr19	8376479	-
intron-3CDS	ENST00000357774	ENST00000598884		TCGA	LD	BRCA	TCGA-BH-A0BT-01A	ZNF98	chr19	22715141	-	NDUFA7	chr19	8376479	-
intron-3CDS	ENST00000357774	ENST00000301457		TCGA	LD	BRCA	TCGA-BH-A0BT-01A	ZNF98	chr19	22715141	-	NDUFA7	chr19	8376479	-
intron-3CDS	ENST00000601553	ENST00000598884		TCGA	LD	BRCA	TCGA-BH-A0BT-01A	ZNF98	chr19	22715141	-	NDUFA7	chr19	8376479	-
intron-3CDS	ENST00000601553	ENST00000301457		TCGA	LD	BRCA	TCGA-BH-A0BT-01A	ZNF98	chr19	22715141	-	NDUFA7	chr19	8376479	-
Frame-shit	ENST00000320580	ENST00000526986		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
In-frame	ENST00000320580	ENST00000310442		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
5CDS-5UTR	ENST00000320580	ENST00000525925		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000529757	ENST00000526986		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000529757	ENST00000310442		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-5UTR	ENST00000529757	ENST00000525925		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000524815	ENST00000526986		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000524815	ENST00000310442		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-5UTR	ENST00000524815	ENST00000525925		TCGA	LD	BRCA	TCGA-BH-A0BV-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
Frame-shit	ENST00000367879	ENST00000367549		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
5CDS-3UTR	ENST00000367879	ENST00000485081		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
3UTR-3CDS	ENST00000372212	ENST00000367549		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
3UTR-3UTR	ENST00000372212	ENST00000485081		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
3UTR-3CDS	ENST00000462329	ENST00000367549		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
3UTR-3UTR	ENST00000462329	ENST00000485081		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
Frame-shit	ENST00000469256	ENST00000367549		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
5CDS-3UTR	ENST00000469256	ENST00000485081		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
Frame-shit	ENST00000470820	ENST00000367549		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
5CDS-3UTR	ENST00000470820	ENST00000485081		TCGA	LD	BRCA	TCGA-BH-A0BW-01A	UCK2	chr1	165875206	+	DHX9	chr1	182850399	+
5CDS-5UTR	ENST00000340253	ENST00000325630		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FBXO38	chr5	147796767	+	SPINK6	chr5	147582584	+
5CDS-5UTR	ENST00000296701	ENST00000325630		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FBXO38	chr5	147796767	+	SPINK6	chr5	147582584	+
5CDS-5UTR	ENST00000394370	ENST00000325630		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FBXO38	chr5	147796767	+	SPINK6	chr5	147582584	+
intron-5UTR	ENST00000509699	ENST00000325630		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FBXO38	chr5	147796767	+	SPINK6	chr5	147582584	+
5CDS-5UTR	ENST00000513826	ENST00000325630		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FBXO38	chr5	147796767	+	SPINK6	chr5	147582584	+
5UTR-3CDS	ENST00000368433	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368433	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368433	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368433	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-intron	ENST00000368433	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000315144	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000315144	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000315144	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000315144	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-intron	ENST00000315144	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368432	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368432	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368432	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368432	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-intron	ENST00000368432	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368431	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368431	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368431	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000368431	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-intron	ENST00000368431	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000292180	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000292180	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000292180	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-3CDS	ENST00000292180	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
5UTR-intron	ENST00000292180	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000487371	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000487371	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000487371	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000487371	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-intron	ENST00000487371	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000405236	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000405236	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000405236	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000405236	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-intron	ENST00000405236	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000295530	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000295530	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000295530	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000295530	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-intron	ENST00000295530	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000368428	ENST00000343815		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000368428	ENST00000428931		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000368428	ENST00000271877		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-3CDS	ENST00000368428	ENST00000361546		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
intron-intron	ENST00000368428	ENST00000484819		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	FLAD1	chr1	154955873	+	UBAP2L	chr1	154199758	+
In-frame	ENST00000313608	ENST00000584396		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	MRPS23	chr17	55926601	-	VEZF1	chr17	56052261	-
Frame-shit	ENST00000313608	ENST00000581208		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	MRPS23	chr17	55926601	-	VEZF1	chr17	56052261	-
In-frame	ENST00000578444	ENST00000584396		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	MRPS23	chr17	55926601	-	VEZF1	chr17	56052261	-
Frame-shit	ENST00000578444	ENST00000581208		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	MRPS23	chr17	55926601	-	VEZF1	chr17	56052261	-
Frame-shit	ENST00000345985	ENST00000272227		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000345985	ENST00000404371		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000345985	ENST00000404824		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000345985	ENST00000540494		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000345985	ENST00000381611		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
5CDS-intron	ENST00000345985	ENST00000489662		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000381685	ENST00000272227		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000381685	ENST00000404371		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000381685	ENST00000404824		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000381685	ENST00000540494		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000381685	ENST00000381611		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
5CDS-intron	ENST00000381685	ENST00000489662		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000542668	ENST00000272227		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000542668	ENST00000404371		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000542668	ENST00000404824		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000542668	ENST00000540494		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000542668	ENST00000381611		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
5CDS-intron	ENST00000542668	ENST00000489662		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000538384	ENST00000272227		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000538384	ENST00000404371		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000538384	ENST00000404824		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000538384	ENST00000540494		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
Frame-shit	ENST00000538384	ENST00000381611		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
5CDS-intron	ENST00000538384	ENST00000489662		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	NOL10	chr2	10794607	-	PDIA6	chr2	10927565	-
In-frame	ENST00000320574	ENST00000204726		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
In-frame	ENST00000320574	ENST00000450791		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
In-frame	ENST00000320574	ENST00000456883		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
Frame-shit	ENST00000320574	ENST00000537452		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
Frame-shit	ENST00000320574	ENST00000545875		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
5CDS-intron	ENST00000320574	ENST00000534967		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
In-frame	ENST00000535270	ENST00000204726		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
In-frame	ENST00000535270	ENST00000450791		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
In-frame	ENST00000535270	ENST00000456883		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
Frame-shit	ENST00000535270	ENST00000537452		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
Frame-shit	ENST00000535270	ENST00000545875		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
5CDS-intron	ENST00000535270	ENST00000534967		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
intron-3CDS	ENST00000434528	ENST00000204726		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
intron-3CDS	ENST00000434528	ENST00000450791		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
intron-3CDS	ENST00000434528	ENST00000456883		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
intron-3CDS	ENST00000434528	ENST00000537452		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
intron-3CDS	ENST00000434528	ENST00000545875		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
intron-intron	ENST00000434528	ENST00000534967		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	POLE	chr12	133248801	-	GOLGA3	chr12	133360893	-
5CDS-5UTR	ENST00000271526	ENST00000255039		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	PRCC	chr1	156738031	+	HAPLN2	chr1	156593259	+
5CDS-intron	ENST00000271526	ENST00000494218		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	PRCC	chr1	156738031	+	HAPLN2	chr1	156593259	+
5CDS-5UTR	ENST00000353233	ENST00000255039		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	PRCC	chr1	156738031	+	HAPLN2	chr1	156593259	+
5CDS-intron	ENST00000353233	ENST00000494218		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	PRCC	chr1	156738031	+	HAPLN2	chr1	156593259	+
intron-5UTR	ENST00000491853	ENST00000255039		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	PRCC	chr1	156738031	+	HAPLN2	chr1	156593259	+
intron-intron	ENST00000491853	ENST00000494218		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	PRCC	chr1	156738031	+	HAPLN2	chr1	156593259	+
In-frame	ENST00000432519	ENST00000250863		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16636090	-
In-frame	ENST00000432519	ENST00000399444		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16636090	-
Frame-shit	ENST00000334133	ENST00000250863		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16636090	-
Frame-shit	ENST00000334133	ENST00000399444		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16636090	-
intron-3CDS	ENST00000483671	ENST00000250863		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16636090	-
intron-3CDS	ENST00000483671	ENST00000399444		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16636090	-
In-frame	ENST00000339208	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000339208	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
In-frame	ENST00000346661	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000346661	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
In-frame	ENST00000345615	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000345615	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
In-frame	ENST00000502449	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000502449	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
In-frame	ENST00000591288	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000591288	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
In-frame	ENST00000394378	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000394378	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
In-frame	ENST00000585472	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000585472	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5UTR-3CDS	ENST00000588194	ENST00000246657		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
5UTR-5UTR	ENST00000588194	ENST00000579344		TCGA	LD	BRCA	TCGA-BH-A0BZ-01A	SYNRG	chr17	35921297	-	CCR7	chr17	38715194	-
Frame-shit	ENST00000305631	ENST00000392882		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000305631	ENST00000358655		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000305631	ENST00000355338		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000305631	ENST00000344102		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000305631	ENST00000557135		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000305631	ENST00000556645		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
5CDS-intron	ENST00000305631	ENST00000554084		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000553834	ENST00000392882		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000553834	ENST00000358655		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000553834	ENST00000355338		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000553834	ENST00000344102		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000553834	ENST00000557135		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
Frame-shit	ENST00000553834	ENST00000556645		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
5CDS-intron	ENST00000553834	ENST00000554084		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-3CDS	ENST00000557117	ENST00000392882		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-3CDS	ENST00000557117	ENST00000358655		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-3CDS	ENST00000557117	ENST00000355338		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-3CDS	ENST00000557117	ENST00000344102		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-3CDS	ENST00000557117	ENST00000557135		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-3CDS	ENST00000557117	ENST00000556645		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-intron	ENST00000557117	ENST00000554084		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	DEGS2	chr14	100625843	-	WARS	chr14	100809724	-
intron-5UTR	ENST00000423230	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-5UTR	ENST00000423230	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-intron	ENST00000423230	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000398656	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000398656	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-intron	ENST00000398656	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000534366	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000534366	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-intron	ENST00000534366	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000528919	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000528919	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-intron	ENST00000528919	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000326134	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-5UTR	ENST00000326134	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
5CDS-intron	ENST00000326134	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-5UTR	ENST00000527071	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-5UTR	ENST00000527071	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-intron	ENST00000527071	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-5UTR	ENST00000544576	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-5UTR	ENST00000544576	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
intron-intron	ENST00000544576	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MROH1	chr8	145278133	+	ARMC2	chr6	109190027	+
3UTR-3CDS	ENST00000369981	ENST00000306270		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369981	ENST00000503631		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369981	ENST00000510291		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369985	ENST00000306270		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369985	ENST00000503631		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369985	ENST00000510291		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369977	ENST00000306270		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369977	ENST00000503631		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369977	ENST00000510291		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369975	ENST00000306270		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369975	ENST00000503631		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
3UTR-3CDS	ENST00000369975	ENST00000510291		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
intron-3CDS	ENST00000462633	ENST00000306270		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
intron-3CDS	ENST00000462633	ENST00000503631		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
intron-3CDS	ENST00000462633	ENST00000510291		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	MYO6	chr6	76624777	+	IBTK	chr6	82935364	-
5CDS-intron	ENST00000230419	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000230419	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000230419	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000349241	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000349241	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000349241	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000345201	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000345201	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000345201	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000352931	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000352931	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000352931	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000481273	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000481273	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000481273	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000476760	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000476760	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000476760	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000471863	ENST00000446507		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000471863	ENST00000441198		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000471863	ENST00000304672		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	PTK7	chr6	43114436	+	PTCRA	chr6	42890765	+
In-frame	ENST00000377387	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377387	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377387	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377387	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377387	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377387	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377387	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000377387	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377390	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000377390	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000377394	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000377394	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000227503	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000227503	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
In-frame	ENST00000334944	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000334944	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000422298	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5UTR-intron	ENST00000422298	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000433274	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000433274	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000302640		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000354582		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000423119		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000456211		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000357086		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000544951		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-3CDS	ENST00000489544	ENST00000443694		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
intron-intron	ENST00000489544	ENST00000463980		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	SF1	chr11	64543970	-	ITPR1	chr3	4669447	+
Frame-shit	ENST00000522695	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522695	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522695	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522695	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000524300	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000524300	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000524300	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000524300	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523558	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523558	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523558	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523558	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521210	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521210	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521210	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521210	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000355780	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000355780	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000355780	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000355780	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000519961	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000519961	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000519961	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000519961	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521727	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521727	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521727	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521727	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521451	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521451	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521451	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000521451	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522509	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522509	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522509	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000522509	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000517542	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000517542	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000517542	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000517542	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000524104	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000524104	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000524104	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
Frame-shit	ENST00000524104	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000522962	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000522962	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000522962	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000522962	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521419	ENST00000443356		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521419	ENST00000603859		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521419	ENST00000254627		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
5UTR-3CDS	ENST00000521419	ENST00000262283		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	STAU2	chr8	74650519	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000347370	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000347370	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000347370	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000349431	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000349431	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000349431	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000339385	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000339385	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000339385	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000348298	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000348298	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000348298	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000400929	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000400929	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000400929	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000360466	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000360466	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000360466	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000400930	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000400930	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000400930	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000491779	ENST00000354700		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-3CDS	ENST00000491779	ENST00000353662		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
intron-intron	ENST00000491779	ENST00000379037		TCGA	LD	BRCA	TCGA-BH-A0C0-01A	UBE2J2	chr1	1197550	-	ACAP3	chr1	1237426	-
5CDS-5UTR	ENST00000305321	ENST00000573319		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	BOLA2B	chr16	30204679	-	BCAR4	chr16	11914154	-
Frame-shit	ENST00000548249	ENST00000353364		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000548249	ENST00000280377		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000548249	ENST00000393654		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000548249	ENST00000550632		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000548249	ENST00000312635		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000537439	ENST00000353364		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000537439	ENST00000280377		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000537439	ENST00000393654		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3UTR	ENST00000537439	ENST00000550632		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3UTR	ENST00000537439	ENST00000312635		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000434715	ENST00000353364		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000434715	ENST00000280377		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000434715	ENST00000393654		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000434715	ENST00000550632		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000434715	ENST00000312635		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000543672	ENST00000353364		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000543672	ENST00000280377		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000543672	ENST00000393654		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000543672	ENST00000550632		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
5CDS-3UTR	ENST00000543672	ENST00000312635		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000551400	ENST00000353364		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000551400	ENST00000280377		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3CDS	ENST00000551400	ENST00000393654		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3UTR	ENST00000551400	ENST00000550632		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
intron-3UTR	ENST00000551400	ENST00000312635		TCGA	LD	BRCA	TCGA-BH-A0C1-01B	DCTN2	chr12	57940811	-	USP15	chr12	62687960	+
Frame-shit	ENST00000377350	ENST00000562435		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566893	-	NETO2	chr16	47120250	-
Frame-shit	ENST00000377350	ENST00000303155		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566893	-	NETO2	chr16	47120250	-
Frame-shit	ENST00000294066	ENST00000562435		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566893	-	NETO2	chr16	47120250	-
Frame-shit	ENST00000294066	ENST00000303155		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566893	-	NETO2	chr16	47120250	-
intron-3CDS	ENST00000468062	ENST00000562435		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566893	-	NETO2	chr16	47120250	-
intron-3CDS	ENST00000468062	ENST00000303155		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	MAP4K2	chr11	64566893	-	NETO2	chr16	47120250	-
Frame-shit	ENST00000253925	ENST00000340360		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
5CDS-5UTR	ENST00000253925	ENST00000321448		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
5CDS-5UTR	ENST00000253925	ENST00000527087		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
5CDS-5UTR	ENST00000253925	ENST00000533598		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
Frame-shit	ENST00000389547	ENST00000340360		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
5CDS-5UTR	ENST00000389547	ENST00000321448		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
5CDS-5UTR	ENST00000389547	ENST00000527087		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
5CDS-5UTR	ENST00000389547	ENST00000533598		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
intron-3CDS	ENST00000530548	ENST00000340360		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
intron-5UTR	ENST00000530548	ENST00000321448		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
intron-5UTR	ENST00000530548	ENST00000527087		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
intron-5UTR	ENST00000530548	ENST00000533598		TCGA	LD	BRCA	TCGA-BH-A0C3-01A	PPFIA1	chr11	70208594	+	XRRA1	chr11	74648113	-
Frame-shit	ENST00000409078	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000409078	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
Frame-shit	ENST00000541859	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000541859	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
Frame-shit	ENST00000541377	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000541377	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
Frame-shit	ENST00000455322	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000455322	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
Frame-shit	ENST00000397587	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000397587	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
Frame-shit	ENST00000263710	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000263710	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
Frame-shit	ENST00000545861	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
5CDS-5UTR	ENST00000545861	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
intron-3CDS	ENST00000430234	ENST00000290573		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
intron-5UTR	ENST00000430234	ENST00000409174		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	CLASP1	chr2	122204913	-	HK2	chr2	75081420	+
intron-3CDS	ENST00000375110	ENST00000555228		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
intron-3CDS	ENST00000375110	ENST00000555661		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
intron-intron	ENST00000375110	ENST00000553326		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
intron-intron	ENST00000375110	ENST00000267568		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
intron-5UTR	ENST00000375110	ENST00000553813		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
In-frame	ENST00000319778	ENST00000555228		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
In-frame	ENST00000319778	ENST00000555661		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5CDS-intron	ENST00000319778	ENST00000553326		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5CDS-intron	ENST00000319778	ENST00000267568		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5CDS-5UTR	ENST00000319778	ENST00000553813		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
In-frame	ENST00000263062	ENST00000555228		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
In-frame	ENST00000263062	ENST00000555661		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5CDS-intron	ENST00000263062	ENST00000553326		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5CDS-intron	ENST00000263062	ENST00000267568		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5CDS-5UTR	ENST00000263062	ENST00000553813		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5UTR-3CDS	ENST00000480402	ENST00000555228		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5UTR-3CDS	ENST00000480402	ENST00000555661		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5UTR-intron	ENST00000480402	ENST00000553326		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5UTR-intron	ENST00000480402	ENST00000267568		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
5UTR-5UTR	ENST00000480402	ENST00000553813		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	EPC1	chr10	32635691	-	PTGR2	chr14	74340726	+
Frame-shit	ENST00000263904	ENST00000409968		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
Frame-shit	ENST00000263904	ENST00000272643		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
Frame-shit	ENST00000263904	ENST00000413152		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
5CDS-intron	ENST00000263904	ENST00000543459		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
5CDS-intron	ENST00000263904	ENST00000485379		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
intron-3CDS	ENST00000465460	ENST00000409968		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
intron-3CDS	ENST00000465460	ENST00000272643		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
intron-3CDS	ENST00000465460	ENST00000413152		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
intron-intron	ENST00000465460	ENST00000543459		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
intron-intron	ENST00000465460	ENST00000485379		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STAM2	chr2	152982740	-	THSD7B	chr2	137813990	+
Frame-shit	ENST00000336934	ENST00000263932		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
Frame-shit	ENST00000336934	ENST00000417814		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
5CDS-intron	ENST00000336934	ENST00000413146		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
5CDS-intron	ENST00000336934	ENST00000479933		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-3CDS	ENST00000255486	ENST00000263932		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-3CDS	ENST00000255486	ENST00000417814		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-intron	ENST00000255486	ENST00000413146		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-intron	ENST00000255486	ENST00000479933		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-3CDS	ENST00000399365	ENST00000263932		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-3CDS	ENST00000399365	ENST00000417814		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-intron	ENST00000399365	ENST00000413146		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-intron	ENST00000399365	ENST00000479933		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
5UTR-3CDS	ENST00000487412	ENST00000263932		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
5UTR-3CDS	ENST00000487412	ENST00000417814		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
5UTR-intron	ENST00000487412	ENST00000413146		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
5UTR-intron	ENST00000487412	ENST00000479933		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-3CDS	ENST00000439831	ENST00000263932		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-3CDS	ENST00000439831	ENST00000417814		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-intron	ENST00000439831	ENST00000413146		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
intron-intron	ENST00000439831	ENST00000479933		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	STARD13	chr13	33859607	-	TNFRSF8	chr1	12169623	+
Frame-shit	ENST00000283943	ENST00000375514		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000283943	ENST00000415876		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000283943	ENST00000535165		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000283943	ENST00000493021		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000283943	ENST00000272716		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000283943	ENST00000446997		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000283943	ENST00000421911		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000389045	ENST00000375514		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000389045	ENST00000415876		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389045	ENST00000535165		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389045	ENST00000493021		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389045	ENST00000272716		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389045	ENST00000446997		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389045	ENST00000421911		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000389044	ENST00000375514		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000389044	ENST00000415876		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389044	ENST00000535165		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389044	ENST00000493021		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389044	ENST00000272716		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389044	ENST00000446997		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000389044	ENST00000421911		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-3CDS	ENST00000543084	ENST00000375514		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-3CDS	ENST00000543084	ENST00000415876		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-intron	ENST00000543084	ENST00000535165		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-intron	ENST00000543084	ENST00000493021		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-intron	ENST00000543084	ENST00000272716		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-intron	ENST00000543084	ENST00000446997		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
intron-intron	ENST00000543084	ENST00000421911		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000409677	ENST00000375514		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
Frame-shit	ENST00000409677	ENST00000415876		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000409677	ENST00000535165		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000409677	ENST00000493021		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000409677	ENST00000272716		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000409677	ENST00000446997		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
5CDS-intron	ENST00000409677	ENST00000421911		TCGA	LD	BRCA	TCGA-BH-A0C7-01B	TRIP12	chr2	230701564	-	SLC4A10	chr2	162820645	+
In-frame	ENST00000353139	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
Frame-shit	ENST00000353139	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000353139	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000353139	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000353139	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000353139	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
In-frame	ENST00000360679	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
Frame-shit	ENST00000360679	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000360679	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000360679	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000360679	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000360679	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
Frame-shit	ENST00000394406	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
Frame-shit	ENST00000394406	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000394406	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000394406	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000394406	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000394406	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
Frame-shit	ENST00000335166	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
Frame-shit	ENST00000335166	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000335166	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000335166	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000335166	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
5CDS-5UTR	ENST00000335166	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000416895	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000416895	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000416895	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000416895	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000416895	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000416895	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000361253	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000361253	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000361253	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000361253	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000361253	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000361253	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000588142	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000588142	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000588142	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000588142	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000588142	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000588142	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000589665	ENST00000403627		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000589665	ENST00000405159		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589665	ENST00000583178		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589665	ENST00000580032		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589665	ENST00000581110		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589665	ENST00000583024		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	ACACA	chr17	35631084	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000400967	ENST00000509176		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
intron-3CDS	ENST00000400967	ENST00000333691		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
intron-intron	ENST00000400967	ENST00000432775		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
intron-intron	ENST00000400967	ENST00000504150		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-3CDS	ENST00000235453	ENST00000509176		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-3CDS	ENST00000235453	ENST00000333691		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-intron	ENST00000235453	ENST00000432775		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-intron	ENST00000235453	ENST00000504150		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
Frame-shit	ENST00000367396	ENST00000509176		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
Frame-shit	ENST00000367396	ENST00000333691		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5CDS-intron	ENST00000367396	ENST00000432775		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5CDS-intron	ENST00000367396	ENST00000504150		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-3CDS	ENST00000477581	ENST00000509176		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-3CDS	ENST00000477581	ENST00000333691		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-intron	ENST00000477581	ENST00000432775		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
5UTR-intron	ENST00000477581	ENST00000504150		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	DENND1B	chr1	197741998	-	CCSER1	chr4	91736913	+
Frame-shit	ENST00000356297	ENST00000416426		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
Frame-shit	ENST00000356297	ENST00000284073		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-intron	ENST00000356297	ENST00000322684		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-intron	ENST00000356297	ENST00000442934		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-intron	ENST00000356297	ENST00000579180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-3UTR	ENST00000356297	ENST00000579505		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
Frame-shit	ENST00000543296	ENST00000416426		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
Frame-shit	ENST00000543296	ENST00000284073		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-intron	ENST00000543296	ENST00000322684		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-intron	ENST00000543296	ENST00000442934		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-intron	ENST00000543296	ENST00000579180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-3UTR	ENST00000543296	ENST00000579505		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	PXDNL	chr8	52721741	-	MSI2	chr17	55729460	+
5CDS-5UTR	ENST00000393328	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393328	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393328	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393328	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393328	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000393328	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393331	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393331	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393331	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393331	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000393331	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000393331	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000347630	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000347630	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000347630	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000347630	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000347630	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000347630	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000504102	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000504102	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000504102	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000504102	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000504102	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000504102	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000503676	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000503676	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000503676	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000503676	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000503676	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000503676	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513080	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513080	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513080	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513080	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513080	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
intron-intron	ENST00000513080	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	SPOP	chr17	47679227	-	VMP1	chr17	57808782	+
In-frame	ENST00000261497	ENST00000431794		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
Frame-shit	ENST00000261497	ENST00000268852		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
5CDS-intron	ENST00000261497	ENST00000586007		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
5CDS-intron	ENST00000261497	ENST00000544606		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
5CDS-intron	ENST00000261497	ENST00000590081		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-3CDS	ENST00000537526	ENST00000431794		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-3CDS	ENST00000537526	ENST00000268852		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-intron	ENST00000537526	ENST00000586007		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-intron	ENST00000537526	ENST00000544606		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-intron	ENST00000537526	ENST00000590081		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-3CDS	ENST00000455117	ENST00000431794		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-3CDS	ENST00000455117	ENST00000268852		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-intron	ENST00000455117	ENST00000586007		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-intron	ENST00000455117	ENST00000544606		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
intron-intron	ENST00000455117	ENST00000590081		TCGA	LD	BRCA	TCGA-BH-A0DD-01A	USP22	chr17	20945978	-	MYO19	chr17	34852250	-
5CDS-intron	ENST00000589222	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000589222	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000589222	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000589222	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000589222	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000589222	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000407086	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000407086	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000407086	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000407086	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000407086	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000407086	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000390652	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000390652	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000390652	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000390652	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000390652	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000390652	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000408905	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000408905	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000408905	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000408905	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000408905	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000408905	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000588462	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000588462	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000588462	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000588462	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000588462	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-intron	ENST00000588462	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585744	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585744	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585744	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585744	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585744	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585744	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000588874	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000588874	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000588874	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000588874	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000588874	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000588874	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585812	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585812	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585812	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585812	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585812	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
intron-intron	ENST00000585812	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	BCAS3	chr17	58786686	+	VMP1	chr17	57919443	+
5CDS-5UTR	ENST00000240364	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000240364	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000240364	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000240364	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000240364	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000240364	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513602	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513602	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513602	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513602	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000513602	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-intron	ENST00000513602	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000514018	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000514018	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000514018	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000514018	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000514018	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-intron	ENST00000514018	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	FAM117A	chr17	47841254	-	VMP1	chr17	57808782	+
intron-3CDS	ENST00000283426	ENST00000332674		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	PLEKHG4B	chr5	113563	+	MXI1	chr10	112039672	+
intron-3CDS	ENST00000283426	ENST00000361248		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	PLEKHG4B	chr5	113563	+	MXI1	chr10	112039672	+
intron-3CDS	ENST00000283426	ENST00000239007		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	PLEKHG4B	chr5	113563	+	MXI1	chr10	112039672	+
intron-3CDS	ENST00000283426	ENST00000393134		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	PLEKHG4B	chr5	113563	+	MXI1	chr10	112039672	+
intron-3UTR	ENST00000283426	ENST00000485566		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	PLEKHG4B	chr5	113563	+	MXI1	chr10	112039672	+
intron-3UTR	ENST00000283426	ENST00000369612		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	PLEKHG4B	chr5	113563	+	MXI1	chr10	112039672	+
In-frame	ENST00000307877	ENST00000582328		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000307877	ENST00000421678		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000307877	ENST00000262290		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000307877	ENST00000543544		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000539137	ENST00000582328		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000539137	ENST00000421678		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000539137	ENST00000262290		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000539137	ENST00000543544		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
Frame-shit	ENST00000355113	ENST00000582328		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
Frame-shit	ENST00000355113	ENST00000421678		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
Frame-shit	ENST00000355113	ENST00000262290		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
Frame-shit	ENST00000355113	ENST00000543544		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000602720	ENST00000582328		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000602720	ENST00000421678		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000602720	ENST00000262290		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000602720	ENST00000543544		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
5UTR-3CDS	ENST00000542536	ENST00000582328		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
5UTR-3CDS	ENST00000542536	ENST00000421678		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
5UTR-3CDS	ENST00000542536	ENST00000262290		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
5UTR-3CDS	ENST00000542536	ENST00000543544		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	SRP68	chr17	74036500	-	LPO	chr17	56327776	+
In-frame	ENST00000300896	ENST00000262764		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
Frame-shit	ENST00000300896	ENST00000329897		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
5CDS-3UTR	ENST00000300896	ENST00000588281		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
Frame-shit	ENST00000592339	ENST00000262764		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
Frame-shit	ENST00000592339	ENST00000329897		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
5CDS-3UTR	ENST00000592339	ENST00000588281		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
In-frame	ENST00000393003	ENST00000262764		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
Frame-shit	ENST00000393003	ENST00000329897		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
5CDS-3UTR	ENST00000393003	ENST00000588281		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
intron-3CDS	ENST00000586881	ENST00000262764		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
intron-3CDS	ENST00000586881	ENST00000329897		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
intron-3UTR	ENST00000586881	ENST00000588281		TCGA	LD	BRCA	TCGA-BH-A0DG-01A	USP32	chr17	58329742	-	PGS1	chr17	76415627	+
Frame-shit	ENST00000262189	ENST00000361727		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
5CDS-intron	ENST00000262189	ENST00000538075		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
5CDS-intron	ENST00000262189	ENST00000463592		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
Frame-shit	ENST00000355193	ENST00000361727		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
5CDS-intron	ENST00000355193	ENST00000538075		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
5CDS-intron	ENST00000355193	ENST00000463592		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-3CDS	ENST00000485655	ENST00000361727		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000485655	ENST00000538075		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000485655	ENST00000463592		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-3CDS	ENST00000485241	ENST00000361727		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000485241	ENST00000538075		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000485241	ENST00000463592		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	KMT2C	chr7	152027686	-	CNTNAP2	chr7	146740999	+
intron-5UTR	ENST00000430069	ENST00000453180		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	TBL1XR1	chr3	176914909	-	NAALADL2-AS3	chr3	174830381	-
5UTR-5UTR	ENST00000457928	ENST00000453180		TCGA	LD	BRCA	TCGA-BH-A0DI-01A	TBL1XR1	chr3	176914909	-	NAALADL2-AS3	chr3	174830381	-
Frame-shit	ENST00000328741	ENST00000259021		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000328741	ENST00000454930		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000328741	ENST00000509773		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000328741	ENST00000510819		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000328741	ENST00000424009		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-5UTR	ENST00000328741	ENST00000503935		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-5UTR	ENST00000328741	ENST00000435742		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000328741	ENST00000513980		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
Frame-shit	ENST00000513748	ENST00000259021		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000513748	ENST00000454930		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000513748	ENST00000509773		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000513748	ENST00000510819		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000513748	ENST00000424009		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-5UTR	ENST00000513748	ENST00000503935		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-5UTR	ENST00000513748	ENST00000435742		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
5CDS-intron	ENST00000513748	ENST00000513980		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	NXPH3	chr17	47653635	+	KAT7	chr17	47874112	+
In-frame	ENST00000414241	ENST00000373297		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000414241	ENST00000314607		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
5CDS-intron	ENST00000414241	ENST00000482131		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000373493	ENST00000373297		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000373493	ENST00000314607		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
5CDS-intron	ENST00000373493	ENST00000482131		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
3UTR-3CDS	ENST00000524393	ENST00000373297		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
3UTR-3CDS	ENST00000524393	ENST00000314607		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
3UTR-intron	ENST00000524393	ENST00000482131		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
intron-3CDS	ENST00000544435	ENST00000373297		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
intron-3CDS	ENST00000544435	ENST00000314607		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
intron-intron	ENST00000544435	ENST00000482131		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000373485	ENST00000373297		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000373485	ENST00000314607		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
5CDS-intron	ENST00000373485	ENST00000482131		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000458695	ENST00000373297		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
In-frame	ENST00000458695	ENST00000314607		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
5CDS-intron	ENST00000458695	ENST00000482131		TCGA	LD	BRCA	TCGA-BH-A0DK-01A	RBBP4	chr1	33133999	+	ZMYM4	chr1	35864014	+
Frame-shit	ENST00000296084	ENST00000273375		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000296084	ENST00000491398		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000296084	ENST00000483733		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
Frame-shit	ENST00000427044	ENST00000273375		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000427044	ENST00000491398		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000427044	ENST00000483733		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
intron-3CDS	ENST00000484106	ENST00000273375		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
intron-5UTR	ENST00000484106	ENST00000491398		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
intron-5UTR	ENST00000484106	ENST00000483733		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	RYK	chr3	133913926	-	RABL3	chr3	120417420	-
5CDS-5UTR	ENST00000316059	ENST00000531347		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	ZFP91	chr11	58352357	+	ANO1-AS2	chr11	69919045	-
5CDS-5UTR	ENST00000316059	ENST00000533327		TCGA	LD	BRCA	TCGA-BH-A0DL-01A	ZFP91	chr11	58352357	+	ANO1-AS2	chr11	69919045	-
5UTR-5UTR	ENST00000301765	ENST00000527697		TCGA	LD	BRCA	TCGA-BH-A0DS-01A	VPS37C	chr11	60928863	-	FADS3	chr11	61647623	-
5UTR-5UTR	ENST00000301765	ENST00000278829		TCGA	LD	BRCA	TCGA-BH-A0DS-01A	VPS37C	chr11	60928863	-	FADS3	chr11	61647623	-
5UTR-5UTR	ENST00000301765	ENST00000540820		TCGA	LD	BRCA	TCGA-BH-A0DS-01A	VPS37C	chr11	60928863	-	FADS3	chr11	61647623	-
5UTR-5UTR	ENST00000301765	ENST00000525588		TCGA	LD	BRCA	TCGA-BH-A0DS-01A	VPS37C	chr11	60928863	-	FADS3	chr11	61647623	-
5UTR-intron	ENST00000301765	ENST00000529525		TCGA	LD	BRCA	TCGA-BH-A0DS-01A	VPS37C	chr11	60928863	-	FADS3	chr11	61647623	-
Frame-shit	ENST00000263856	ENST00000237455		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
5CDS-5UTR	ENST00000263856	ENST00000477307		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
Frame-shit	ENST00000409727	ENST00000237455		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
5CDS-5UTR	ENST00000409727	ENST00000477307		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
intron-3CDS	ENST00000409225	ENST00000237455		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
intron-5UTR	ENST00000409225	ENST00000477307		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
Frame-shit	ENST00000439940	ENST00000237455		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
5CDS-5UTR	ENST00000439940	ENST00000477307		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
intron-3CDS	ENST00000494623	ENST00000237455		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
intron-5UTR	ENST00000494623	ENST00000477307		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	CHMP3	chr2	86769375	-	RNF103	chr2	86839397	-
intron-5UTR	ENST00000464524	ENST00000487694		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
intron-intron	ENST00000464524	ENST00000461745		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
intron-intron	ENST00000464524	ENST00000332191		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
intron-intron	ENST00000464524	ENST00000469233		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-5UTR	ENST00000418611	ENST00000487694		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-intron	ENST00000418611	ENST00000461745		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-intron	ENST00000418611	ENST00000332191		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-intron	ENST00000418611	ENST00000469233		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5CDS-5UTR	ENST00000389061	ENST00000487694		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5CDS-intron	ENST00000389061	ENST00000461745		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5CDS-intron	ENST00000389061	ENST00000332191		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5CDS-intron	ENST00000389061	ENST00000469233		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-5UTR	ENST00000541314	ENST00000487694		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-intron	ENST00000541314	ENST00000461745		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-intron	ENST00000541314	ENST00000332191		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
5UTR-intron	ENST00000541314	ENST00000469233		TCGA	LD	BRCA	TCGA-BH-A0DX-01A	SACM1L	chr3	45730989	+	ROBO2	chr3	75986632	+
Frame-shit	ENST00000566983	ENST00000261475		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
5CDS-intron	ENST00000566983	ENST00000555644		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
Frame-shit	ENST00000268261	ENST00000261475		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
5CDS-intron	ENST00000268261	ENST00000555644		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
Frame-shit	ENST00000539622	ENST00000261475		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
5CDS-intron	ENST00000539622	ENST00000555644		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
intron-3CDS	ENST00000537352	ENST00000261475		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
intron-intron	ENST00000537352	ENST00000555644		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
intron-3CDS	ENST00000569958	ENST00000261475		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
intron-intron	ENST00000569958	ENST00000555644		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
intron-3CDS	ENST00000565837	ENST00000261475		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
intron-intron	ENST00000565837	ENST00000555644		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	PMM2	chr16	8900264	+	PPP2R3C	chr14	35560413	-
In-frame	ENST00000456909	ENST00000368704		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000456909	ENST00000368706		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000456909	ENST00000368703		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000456909	ENST00000368705		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
5CDS-5UTR	ENST00000456909	ENST00000474991		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000295641	ENST00000368704		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000295641	ENST00000368706		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000295641	ENST00000368703		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
In-frame	ENST00000295641	ENST00000368705		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
5CDS-5UTR	ENST00000295641	ENST00000474991		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
intron-3CDS	ENST00000459692	ENST00000368704		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
intron-3CDS	ENST00000459692	ENST00000368706		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
intron-3CDS	ENST00000459692	ENST00000368703		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
intron-3CDS	ENST00000459692	ENST00000368705		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
intron-5UTR	ENST00000459692	ENST00000474991		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	STK11IP	chr2	220473038	+	S100A16	chr1	153580599	-
Frame-shit	ENST00000300896	ENST00000579585		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
In-frame	ENST00000300896	ENST00000584573		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
Frame-shit	ENST00000300896	ENST00000361733		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
In-frame	ENST00000300896	ENST00000361357		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
Frame-shit	ENST00000300896	ENST00000577395		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
5CDS-intron	ENST00000300896	ENST00000577784		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000592339	ENST00000579585		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000592339	ENST00000584573		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000592339	ENST00000361733		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000592339	ENST00000361357		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000592339	ENST00000577395		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-intron	ENST00000592339	ENST00000577784		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
Frame-shit	ENST00000393003	ENST00000579585		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
In-frame	ENST00000393003	ENST00000584573		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
Frame-shit	ENST00000393003	ENST00000361733		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
In-frame	ENST00000393003	ENST00000361357		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
Frame-shit	ENST00000393003	ENST00000577395		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
5CDS-intron	ENST00000393003	ENST00000577784		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000586881	ENST00000579585		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000586881	ENST00000584573		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000586881	ENST00000361733		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000586881	ENST00000361357		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000586881	ENST00000577395		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-intron	ENST00000586881	ENST00000577784		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	USP32	chr17	58422842	-	MAP3K3	chr17	61770909	+
intron-3CDS	ENST00000602063	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
intron-5UTR	ENST00000602063	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
intron-5UTR	ENST00000602063	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
intron-5UTR	ENST00000602063	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
intron-5UTR	ENST00000602063	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
intron-intron	ENST00000602063	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-3CDS	ENST00000594083	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000594083	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000594083	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000594083	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000594083	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-intron	ENST00000594083	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-3CDS	ENST00000376716	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000376716	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000376716	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000376716	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000376716	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-intron	ENST00000376716	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
Frame-shit	ENST00000391795	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5CDS-5UTR	ENST00000391795	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5CDS-5UTR	ENST00000391795	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5CDS-5UTR	ENST00000391795	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5CDS-5UTR	ENST00000391795	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5CDS-intron	ENST00000391795	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-3CDS	ENST00000598071	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000598071	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000598071	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000598071	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000598071	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-intron	ENST00000598071	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-3CDS	ENST00000597747	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000597747	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000597747	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000597747	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000597747	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-intron	ENST00000597747	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-3CDS	ENST00000595114	ENST00000327355		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000595114	ENST00000555748		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000595114	ENST00000555696		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000595114	ENST00000553393		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-5UTR	ENST00000595114	ENST00000555064		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5UTR-intron	ENST00000595114	ENST00000555971		TCGA	LD	BRCA	TCGA-BH-A0DZ-01A	ZNF615	chr19	52511394	-	FAM174B	chr15	93173575	-
5CDS-intron	ENST00000260665	ENST00000342183		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000401710		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000404971		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000406316		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000405472		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000401669		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000406859		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000402717		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000331040		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-intron	ENST00000260665	ENST00000405581		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000342183		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000401710		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000404971		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000406316		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000405472		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000401669		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000406859		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000402717		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000331040		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409946	ENST00000405581		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000342183		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000401710		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000404971		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000406316		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000405472		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000401669		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000406859		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000402717		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000331040		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
intron-intron	ENST00000409659	ENST00000405581		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	LRPPRC	chr2	44152206	-	NRXN1	chr2	51153093	-
5CDS-5UTR	ENST00000329286	ENST00000416284		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8624996	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000329286	ENST00000551619		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8624996	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000329286	ENST00000550003		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8624996	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000329286	ENST00000551449		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8624996	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000329286	ENST00000549456		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	RAB12	chr18	8624996	+	FAM19A2	chr12	62261207	-
In-frame	ENST00000424032	ENST00000306279		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
5CDS-intron	ENST00000424032	ENST00000463422		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
In-frame	ENST00000600321	ENST00000306279		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
5CDS-intron	ENST00000600321	ENST00000463422		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
In-frame	ENST00000344085	ENST00000306279		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
5CDS-intron	ENST00000344085	ENST00000463422		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
In-frame	ENST00000597976	ENST00000306279		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
5CDS-intron	ENST00000597976	ENST00000463422		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
In-frame	ENST00000422689	ENST00000306279		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
5CDS-intron	ENST00000422689	ENST00000463422		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
intron-3CDS	ENST00000595099	ENST00000306279		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
intron-intron	ENST00000595099	ENST00000463422		TCGA	LD	BRCA	TCGA-BH-A0E2-01A	ZNF880	chr19	52873230	+	ATOH8	chr2	86014008	+
In-frame	ENST00000308488	ENST00000278550		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
5CDS-intron	ENST00000308488	ENST00000533038		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
In-frame	ENST00000360355	ENST00000278550		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
5CDS-intron	ENST00000360355	ENST00000533038		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
intron-3CDS	ENST00000480887	ENST00000278550		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
intron-intron	ENST00000480887	ENST00000533038		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
intron-3CDS	ENST00000530604	ENST00000278550		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
intron-intron	ENST00000530604	ENST00000533038		TCGA	LD	BRCA	TCGA-BH-A0EB-01A	RSF1	chr11	77436590	-	TENM4	chr11	78567223	-
In-frame	ENST00000537045	ENST00000263256		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000537045	ENST00000463886		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
In-frame	ENST00000263196	ENST00000263256		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000263196	ENST00000463886		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
3UTR-3CDS	ENST00000545799	ENST00000263256		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
3UTR-intron	ENST00000545799	ENST00000463886		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
intron-3CDS	ENST00000473832	ENST00000263256		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
intron-intron	ENST00000473832	ENST00000463886		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	DGCR2	chr22	19028571	-	DESI1	chr22	42003865	-
5CDS-5UTR	ENST00000583610	ENST00000389760		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000583610	ENST00000313080		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000583610	ENST00000591885		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000583610	ENST00000592378		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000394294	ENST00000389760		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000394294	ENST00000313080		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000394294	ENST00000591885		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000394294	ENST00000592378		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000264658	ENST00000389760		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000264658	ENST00000313080		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000264658	ENST00000591885		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000264658	ENST00000592378		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000577399	ENST00000389760		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000577399	ENST00000313080		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000577399	ENST00000591885		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000577399	ENST00000592378		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	FBXL20	chr17	37455243	-	RHBDF2	chr17	74483991	-
5CDS-intron	ENST00000336648	ENST00000454800		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
5CDS-intron	ENST00000336648	ENST00000398341		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
5CDS-intron	ENST00000336648	ENST00000352133		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
5CDS-intron	ENST00000399120	ENST00000454800		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
5CDS-intron	ENST00000399120	ENST00000398341		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
5CDS-intron	ENST00000399120	ENST00000352133		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
intron-intron	ENST00000482273	ENST00000454800		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
intron-intron	ENST00000482273	ENST00000398341		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
intron-intron	ENST00000482273	ENST00000352133		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	HLCS	chr21	38269160	-	SLC37A1	chr21	43963546	+
Frame-shit	ENST00000354234	ENST00000557016		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
5CDS-5UTR	ENST00000354234	ENST00000216520		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
5CDS-intron	ENST00000354234	ENST00000555373		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
Frame-shit	ENST00000317257	ENST00000557016		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
5CDS-5UTR	ENST00000317257	ENST00000216520		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
5CDS-intron	ENST00000317257	ENST00000555373		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
intron-3CDS	ENST00000481439	ENST00000557016		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
intron-5UTR	ENST00000481439	ENST00000216520		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
intron-intron	ENST00000481439	ENST00000555373		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
Frame-shit	ENST00000258672	ENST00000557016		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
5CDS-5UTR	ENST00000258672	ENST00000216520		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
5CDS-intron	ENST00000258672	ENST00000555373		TCGA	LD	BRCA	TCGA-BH-A0EE-01A	SETDB2	chr13	50042096	+	ERH	chr14	69847357	-
In-frame	ENST00000217131	ENST00000309060		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
Frame-shit	ENST00000217131	ENST00000540170		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
Frame-shit	ENST00000217131	ENST00000559234		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
Frame-shit	ENST00000217131	ENST00000557816		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
In-frame	ENST00000217131	ENST00000558993		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
In-frame	ENST00000217131	ENST00000544979		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
Frame-shit	ENST00000217131	ENST00000560361		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
In-frame	ENST00000217131	ENST00000432768		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
5CDS-intron	ENST00000217131	ENST00000561291		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	CTSZ	chr20	57571694	-	ZHX3	chr20	39813841	-
5UTR-3UTR	ENST00000599056	ENST00000505455		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	ZNF160	chr19	53594890	-	ADAM5	chr8	39274733	+
5UTR-3UTR	ENST00000418871	ENST00000505455		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	ZNF160	chr19	53594890	-	ADAM5	chr8	39274733	+
5UTR-3UTR	ENST00000429604	ENST00000505455		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	ZNF160	chr19	53594890	-	ADAM5	chr8	39274733	+
intron-3UTR	ENST00000601421	ENST00000505455		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	ZNF160	chr19	53594890	-	ADAM5	chr8	39274733	+
5UTR-3UTR	ENST00000355147	ENST00000505455		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	ZNF160	chr19	53594890	-	ADAM5	chr8	39274733	+
intron-3UTR	ENST00000599729	ENST00000505455		TCGA	LD	BRCA	TCGA-BH-A0GY-01A	ZNF160	chr19	53594890	-	ADAM5	chr8	39274733	+
5CDS-5UTR	ENST00000369851	ENST00000271277		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	GNAI3	chr1	110121983	+	CTTNBP2NL	chr1	112954816	+
5CDS-intron	ENST00000369851	ENST00000607039		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	GNAI3	chr1	110121983	+	CTTNBP2NL	chr1	112954816	+
Frame-shit	ENST00000334370	ENST00000598490		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
Frame-shit	ENST00000334370	ENST00000341747		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
Frame-shit	ENST00000334370	ENST00000499536		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
Frame-shit	ENST00000251268	ENST00000598490		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
Frame-shit	ENST00000251268	ENST00000341747		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
Frame-shit	ENST00000251268	ENST00000499536		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
intron-3CDS	ENST00000378073	ENST00000598490		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
intron-3CDS	ENST00000378073	ENST00000341747		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
intron-3CDS	ENST00000378073	ENST00000499536		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	MEGF8	chr19	42855913	+	PRR19	chr19	42814423	+
5UTR-3CDS	ENST00000598490	ENST00000421905		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
5UTR-3CDS	ENST00000598490	ENST00000221462		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
5UTR-intron	ENST00000598490	ENST00000496125		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
5UTR-3CDS	ENST00000341747	ENST00000421905		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
5UTR-3CDS	ENST00000341747	ENST00000221462		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
5UTR-intron	ENST00000341747	ENST00000496125		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
intron-3CDS	ENST00000499536	ENST00000421905		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
intron-3CDS	ENST00000499536	ENST00000221462		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
intron-intron	ENST00000499536	ENST00000496125		TCGA	LD	BRCA	TCGA-BH-A0H0-01A	PRR19	chr19	42806655	+	PPP1R37	chr19	45641772	+
In-frame	ENST00000311481	ENST00000371917		TCGA	LD	BRCA	TCGA-BH-A0H6-01A	RAB1B	chr11	66043406	+	ARFGEF2	chr20	47567860	+
5CDS-intron	ENST00000311481	ENST00000493140		TCGA	LD	BRCA	TCGA-BH-A0H6-01A	RAB1B	chr11	66043406	+	ARFGEF2	chr20	47567860	+
In-frame	ENST00000527397	ENST00000371917		TCGA	LD	BRCA	TCGA-BH-A0H6-01A	RAB1B	chr11	66043406	+	ARFGEF2	chr20	47567860	+
5CDS-intron	ENST00000527397	ENST00000493140		TCGA	LD	BRCA	TCGA-BH-A0H6-01A	RAB1B	chr11	66043406	+	ARFGEF2	chr20	47567860	+
Frame-shit	ENST00000409236	ENST00000441795		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000409236	ENST00000602553		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000409236	ENST00000377626		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000356421	ENST00000441795		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000356421	ENST00000602553		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000356421	ENST00000377626		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000317233	ENST00000441795		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000317233	ENST00000602553		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000317233	ENST00000377626		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000409579	ENST00000441795		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000409579	ENST00000602553		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
Frame-shit	ENST00000409579	ENST00000377626		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
intron-3CDS	ENST00000483600	ENST00000441795		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
intron-3CDS	ENST00000483600	ENST00000602553		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
intron-3CDS	ENST00000483600	ENST00000377626		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AFF3	chr2	100623094	-	ZNF658	chr9	40784585	+
In-frame	ENST00000381061	ENST00000288266		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ATXN10	chr22	46136418	+	APPL1	chr3	57280104	+
In-frame	ENST00000252934	ENST00000288266		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ATXN10	chr22	46136418	+	APPL1	chr3	57280104	+
intron-3CDS	ENST00000498009	ENST00000288266		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ATXN10	chr22	46136418	+	APPL1	chr3	57280104	+
intron-3CDS	ENST00000402380	ENST00000288266		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ATXN10	chr22	46136418	+	APPL1	chr3	57280104	+
5UTR-intron	ENST00000395914	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395914	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395914	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395909	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395909	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395909	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000371356	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000371356	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000371356	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000347343	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000347343	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000347343	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395911	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395911	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395911	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000312783	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000312783	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000312783	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395915	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395915	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395915	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395913	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395913	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
5UTR-intron	ENST00000395913	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395907	ENST00000459785		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395907	ENST00000407689		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
intron-intron	ENST00000395907	ENST00000404953		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	AURKA	chr20	54967210	-	GATSL3	chr22	30684765	-
Frame-shit	ENST00000374877	ENST00000571570		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000374877	ENST00000572639		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000374877	ENST00000579978		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
In-frame	ENST00000374877	ENST00000344877		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374877	ENST00000582222		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000577425		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000571024		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000574924		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000572851		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000357385		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374877	ENST00000584314		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374877	ENST00000571874		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374877	ENST00000578550		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374877	ENST00000577747		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000579133		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000392376		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000583839		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000578544		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374877	ENST00000575195		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000397545	ENST00000571570		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000397545	ENST00000572639		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000397545	ENST00000579978		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
In-frame	ENST00000397545	ENST00000344877		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000397545	ENST00000582222		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000577425		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000571024		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000574924		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000572851		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000357385		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000397545	ENST00000584314		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000397545	ENST00000571874		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000397545	ENST00000578550		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000397545	ENST00000577747		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000579133		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000392376		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000583839		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000578544		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000397545	ENST00000575195		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000269318	ENST00000571570		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000269318	ENST00000572639		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000269318	ENST00000579978		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
In-frame	ENST00000269318	ENST00000344877		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000269318	ENST00000582222		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000577425		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000571024		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000574924		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000572851		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000357385		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000269318	ENST00000584314		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000269318	ENST00000571874		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000269318	ENST00000578550		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000269318	ENST00000577747		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000579133		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000392376		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000583839		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000578544		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000269318	ENST00000575195		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000374876	ENST00000571570		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000374876	ENST00000572639		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
Frame-shit	ENST00000374876	ENST00000579978		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
In-frame	ENST00000374876	ENST00000344877		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374876	ENST00000582222		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000577425		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000571024		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000574924		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000572851		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000357385		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374876	ENST00000584314		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374876	ENST00000571874		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374876	ENST00000578550		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-intron	ENST00000374876	ENST00000577747		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000579133		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000392376		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000583839		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000578544		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5CDS-3UTR	ENST00000374876	ENST00000575195		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3CDS	ENST00000573903	ENST00000571570		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3CDS	ENST00000573903	ENST00000572639		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3CDS	ENST00000573903	ENST00000579978		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3CDS	ENST00000573903	ENST00000344877		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-intron	ENST00000573903	ENST00000582222		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000577425		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000571024		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000574924		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000572851		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000357385		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-intron	ENST00000573903	ENST00000584314		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-intron	ENST00000573903	ENST00000571874		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-intron	ENST00000573903	ENST00000578550		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-intron	ENST00000573903	ENST00000577747		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000579133		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000392376		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000583839		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000578544		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
intron-3UTR	ENST00000573903	ENST00000575195		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	CCDC40	chr17	78011985	+	ANAPC11	chr17	79857796	+
5UTR-3CDS	ENST00000361682	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000361682	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-intron	ENST00000361682	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000403184	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000403184	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-intron	ENST00000403184	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000403710	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000403710	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-intron	ENST00000403710	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000407537	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000407537	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-intron	ENST00000407537	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000406520	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-3CDS	ENST00000406520	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
5UTR-intron	ENST00000406520	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-3CDS	ENST00000449653	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-3CDS	ENST00000449653	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-intron	ENST00000449653	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-3CDS	ENST00000493893	ENST00000216264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-3CDS	ENST00000493893	ENST00000541677		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-intron	ENST00000493893	ENST00000471929		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	COMT	chr22	19948812	+	CERK	chr22	47095362	-
intron-3CDS	ENST00000515359	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000515359	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000515359	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000515359	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3UTR	ENST00000515359	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000308775	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000308775	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000308775	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000308775	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000308775	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000541308	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000541308	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000541308	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000541308	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000541308	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000539901	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000539901	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000539901	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000539901	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000539901	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000545947	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000545947	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000545947	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000545947	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000545947	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000538711	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000538711	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000538711	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000538711	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000538711	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000479935	ENST00000354698		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000479935	ENST00000427617		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000479935	ENST00000412564		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3CDS	ENST00000479935	ENST00000440261		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
intron-3UTR	ENST00000479935	ENST00000454212		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	DAG1	chr3	49507866	+	ZNF589	chr3	48302303	+
In-frame	ENST00000217429	ENST00000437398		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FAM83D	chr20	37555568	+	SPECC1L	chr22	24709281	+
In-frame	ENST00000217429	ENST00000314328		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FAM83D	chr20	37555568	+	SPECC1L	chr22	24709281	+
In-frame	ENST00000217429	ENST00000541492		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FAM83D	chr20	37555568	+	SPECC1L	chr22	24709281	+
5CDS-3UTR	ENST00000217429	ENST00000416735		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FAM83D	chr20	37555568	+	SPECC1L	chr22	24709281	+
5CDS-5UTR	ENST00000307968	ENST00000379249		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379272		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379255		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000296869		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379246		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379244		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000544770		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000543479		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000477640		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000307968	ENST00000357096		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379240		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000431707		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379249		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379272		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379255		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000296869		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379246		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379244		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000544770		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000543479		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000477640		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000307954	ENST00000357096		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379240		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000431707		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379249		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379272		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379255		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000296869		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379246		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379244		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000544770		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000543479		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000477640		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000510461	ENST00000357096		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379240		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000431707		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379249		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379264		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379272		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379255		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000296869		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379246		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379244		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000544770		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000543479		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000477640		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000511848	ENST00000357096		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379240		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000431707		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP1	chr5	131132523	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000264433	ENST00000535741		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
5CDS-intron	ENST00000264433	ENST00000510413		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
5CDS-5UTR	ENST00000264433	ENST00000503716		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
5CDS-intron	ENST00000264433	ENST00000357115		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
5CDS-intron	ENST00000264433	ENST00000507224		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000379346	ENST00000535741		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000379346	ENST00000510413		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-5UTR	ENST00000379346	ENST00000503716		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000379346	ENST00000357115		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000379346	ENST00000507224		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000505445	ENST00000535741		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000505445	ENST00000510413		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-5UTR	ENST00000505445	ENST00000503716		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000505445	ENST00000357115		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
intron-intron	ENST00000505445	ENST00000507224		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	FNIP2	chr4	159690471	+	LRBA	chr4	151242535	-
5UTR-3CDS	ENST00000374864	ENST00000216160		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-3CDS	ENST00000374864	ENST00000331454		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-intron	ENST00000374864	ENST00000488859		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-3CDS	ENST00000535650	ENST00000216160		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-3CDS	ENST00000535650	ENST00000331454		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-intron	ENST00000535650	ENST00000488859		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-3CDS	ENST00000262650	ENST00000216160		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-3CDS	ENST00000262650	ENST00000331454		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
5UTR-intron	ENST00000262650	ENST00000488859		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000483727	ENST00000216160		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000483727	ENST00000331454		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
intron-intron	ENST00000483727	ENST00000488859		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	ITCH	chr20	32957276	+	TAB1	chr22	39811011	+
In-frame	ENST00000313654	ENST00000415576		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
In-frame	ENST00000313654	ENST00000343848		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
In-frame	ENST00000313654	ENST00000308268		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
In-frame	ENST00000399516	ENST00000415576		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
In-frame	ENST00000399516	ENST00000343848		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
In-frame	ENST00000399516	ENST00000308268		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000269217	ENST00000415576		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000269217	ENST00000343848		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000269217	ENST00000308268		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000587184	ENST00000415576		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000587184	ENST00000343848		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000587184	ENST00000308268		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000588770	ENST00000415576		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000588770	ENST00000343848		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
intron-3CDS	ENST00000588770	ENST00000308268		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	LAMA3	chr18	21294036	+	PSMA8	chr18	23758794	+
Frame-shit	ENST00000264710	ENST00000540274		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000264710	ENST00000377307		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000264710	ENST00000276826		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000264710	ENST00000528810		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
intron-3CDS	ENST00000462003	ENST00000540274		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
intron-3CDS	ENST00000462003	ENST00000377307		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
intron-3CDS	ENST00000462003	ENST00000276826		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
intron-intron	ENST00000462003	ENST00000528810		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RAB10	chr2	26257604	+	ARHGAP39	chr8	145781027	-
intron-3CDS	ENST00000405409	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000405409	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000414461	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000414461	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000449924	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000449924	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000262829	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000262829	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000397303	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000397303	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000359369	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000359369	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000416721	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
intron-intron	ENST00000416721	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
In-frame	ENST00000438146	ENST00000370501		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000438146	ENST00000482259		TCGA	LD	BRCA	TCGA-BH-A0H7-01A	RBFOX2	chr22	36424288	-	NTSR1	chr20	61386037	+
Frame-shit	ENST00000519374	ENST00000231668		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519374	ENST00000351486		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519374	ENST00000352523		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519374	ENST00000393770		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519911	ENST00000231668		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519911	ENST00000351486		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519911	ENST00000352523		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000519911	ENST00000393770		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
intron-3CDS	ENST00000265093	ENST00000231668		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
intron-3CDS	ENST00000265093	ENST00000351486		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
intron-3CDS	ENST00000265093	ENST00000352523		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
intron-3CDS	ENST00000265093	ENST00000393770		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000517669	ENST00000231668		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000517669	ENST00000351486		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000517669	ENST00000352523		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000517669	ENST00000393770		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	ATP6V0E1	chr5	172421825	+	BNIP1	chr5	172581325	+
Frame-shit	ENST00000541337	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000541337	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000289422	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000289422	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000361474	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000361474	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000545385	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000545385	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000394770	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000394770	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000358522	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000358522	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000289409	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000289409	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000340391	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000340391	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000518130	ENST00000261811		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000518130	ENST00000509789		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	NRG2	chr5	139421955	-	CYSTM1	chr5	139622890	+
5CDS-intron	ENST00000371828	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371828	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000371828	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371828	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371828	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371828	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371802	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371802	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000371802	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371802	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371802	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371802	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371856	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371856	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000371856	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371856	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371856	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371856	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000347458	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000347458	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000347458	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000347458	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000347458	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000347458	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000340954	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000340954	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000340954	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000340954	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000340954	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000340954	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371792	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371792	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000371792	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371792	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371792	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000371792	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000360426	ENST00000396560		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000360426	ENST00000396559		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-3UTR	ENST00000360426	ENST00000561932		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000360426	ENST00000543967		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000360426	ENST00000356427		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
5CDS-intron	ENST00000360426	ENST00000324570		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	STAU1	chr20	47733663	-	ATF7IP2	chr16	10508431	+
Frame-shit	ENST00000349714	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000349714	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000359226	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000359226	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000374384	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000374384	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000374380	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000374380	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000374385	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000374385	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000374377	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000374377	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5UTR-3CDS	ENST00000397556	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5UTR-5UTR	ENST00000397556	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000407996	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000407996	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
intron-3CDS	ENST00000540457	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
intron-5UTR	ENST00000540457	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000542501	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000542501	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
Frame-shit	ENST00000397554	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5CDS-5UTR	ENST00000397554	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5UTR-3CDS	ENST00000491125	ENST00000262878		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
5UTR-5UTR	ENST00000491125	ENST00000373694		TCGA	LD	BRCA	TCGA-BH-A0H9-01A	UQCC1	chr20	33981895	-	SAMHD1	chr20	35575207	-
In-frame	ENST00000393043	ENST00000341928		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000393043	ENST00000544123		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000393043	ENST00000540638		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000393043	ENST00000342933		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000393043	ENST00000400111		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000393043	ENST00000542652		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000393043	ENST00000427684		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000393043	ENST00000542146		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000269122	ENST00000341928		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000269122	ENST00000544123		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000269122	ENST00000540638		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000269122	ENST00000342933		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000269122	ENST00000400111		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000269122	ENST00000542652		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000269122	ENST00000427684		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000269122	ENST00000542146		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000579456	ENST00000341928		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000579456	ENST00000544123		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000579456	ENST00000540638		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000579456	ENST00000342933		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
In-frame	ENST00000579456	ENST00000400111		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000579456	ENST00000542652		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000579456	ENST00000427684		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
5CDS-5UTR	ENST00000579456	ENST00000542146		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-3CDS	ENST00000579815	ENST00000341928		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-3CDS	ENST00000579815	ENST00000544123		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-3CDS	ENST00000579815	ENST00000540638		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-3CDS	ENST00000579815	ENST00000342933		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-3CDS	ENST00000579815	ENST00000400111		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-5UTR	ENST00000579815	ENST00000542652		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-5UTR	ENST00000579815	ENST00000427684		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
intron-5UTR	ENST00000579815	ENST00000542146		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	CLTC	chr17	57697534	+	EPB41L3	chr18	5397425	-
Frame-shit	ENST00000341928	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
Frame-shit	ENST00000544123	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
Frame-shit	ENST00000540638	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
Frame-shit	ENST00000342933	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
Frame-shit	ENST00000400111	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
5UTR-3CDS	ENST00000542652	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
Frame-shit	ENST00000427684	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
Frame-shit	ENST00000542146	ENST00000389658		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	EPB41L3	chr18	5395066	-	LAMA1	chr18	7037750	-
intron-5UTR	ENST00000503238	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508632		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-3CDS	ENST00000494674	ENST00000328908		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3CDS	ENST00000494674	ENST00000397588		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3UTR	ENST00000494674	ENST00000472453		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3UTR	ENST00000494674	ENST00000449732		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3UTR	ENST00000494674	ENST00000343762		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
Frame-shit	ENST00000337659	ENST00000328908		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
Frame-shit	ENST00000337659	ENST00000397588		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
5CDS-3UTR	ENST00000337659	ENST00000472453		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
5CDS-3UTR	ENST00000337659	ENST00000449732		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
5CDS-3UTR	ENST00000337659	ENST00000343762		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3CDS	ENST00000538861	ENST00000328908		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3CDS	ENST00000538861	ENST00000397588		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3UTR	ENST00000538861	ENST00000472453		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3UTR	ENST00000538861	ENST00000449732		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
intron-3UTR	ENST00000538861	ENST00000343762		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4952500	+
In-frame	ENST00000436008	ENST00000380520		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000436008	ENST00000380524		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000436008	ENST00000380529		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000436008	ENST00000380539		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000436008	ENST00000380546		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000436008	ENST00000335686		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000406686	ENST00000380520		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000406686	ENST00000380524		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000406686	ENST00000380529		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000406686	ENST00000380539		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000406686	ENST00000380546		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000406686	ENST00000335686		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000380302	ENST00000380520		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000380302	ENST00000380524		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000380302	ENST00000380529		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000380302	ENST00000380539		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000380302	ENST00000380546		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000380302	ENST00000335686		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000490273	ENST00000380520		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000490273	ENST00000380524		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000490273	ENST00000380529		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000490273	ENST00000380539		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000490273	ENST00000380546		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000490273	ENST00000335686		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000380298	ENST00000380520		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000380298	ENST00000380524		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000380298	ENST00000380529		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000380298	ENST00000380539		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000380298	ENST00000380546		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000380298	ENST00000335686		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000433689	ENST00000380520		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000433689	ENST00000380524		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000433689	ENST00000380529		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000433689	ENST00000380539		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000433689	ENST00000380546		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
intron-3CDS	ENST00000433689	ENST00000335686		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	SLC22A23	chr6	3456140	-	SERPINB6	chr6	2949303	-
In-frame	ENST00000393066	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000393066	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000393066	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000393066	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000393066	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000393066	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000393066	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5CDS-intron	ENST00000393066	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
In-frame	ENST00000262294	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000262294	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000262294	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000262294	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000262294	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000262294	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000262294	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5CDS-intron	ENST00000262294	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-3CDS	ENST00000376149	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5UTR-intron	ENST00000376149	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-3CDS	ENST00000393065	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
intron-intron	ENST00000393065	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
In-frame	ENST00000584889	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000584889	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000584889	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000584889	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000584889	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000584889	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000584889	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
5CDS-intron	ENST00000584889	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	TRIM37	chr17	57181654	-	TUBD1	chr17	57937785	-
Frame-shit	ENST00000339282	ENST00000397410		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	ZNF564	chr19	12662144	-	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000339282	ENST00000595465		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	ZNF564	chr19	12662144	-	AKAP8L	chr19	15521405	-
5CDS-intron	ENST00000339282	ENST00000595879		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	ZNF564	chr19	12662144	-	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000416136	ENST00000397410		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	ZNF564	chr19	12662144	-	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000416136	ENST00000595465		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	ZNF564	chr19	12662144	-	AKAP8L	chr19	15521405	-
5CDS-intron	ENST00000416136	ENST00000595879		TCGA	LD	BRCA	TCGA-BH-A0HB-01A	ZNF564	chr19	12662144	-	AKAP8L	chr19	15521405	-
5CDS-3UTR	ENST00000347053	ENST00000223208		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000347053	ENST00000541543		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000347053	ENST00000343969		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000347053	ENST00000489512		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000347053	ENST00000495702		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-3UTR	ENST00000297135	ENST00000223208		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000297135	ENST00000541543		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000297135	ENST00000343969		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000297135	ENST00000489512		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000297135	ENST00000495702		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-3UTR	ENST00000393603	ENST00000223208		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000393603	ENST00000541543		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000393603	ENST00000343969		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000393603	ENST00000489512		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5CDS-intron	ENST00000393603	ENST00000495702		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5UTR-3UTR	ENST00000475638	ENST00000223208		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5UTR-intron	ENST00000475638	ENST00000541543		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5UTR-intron	ENST00000475638	ENST00000343969		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5UTR-intron	ENST00000475638	ENST00000489512		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
5UTR-intron	ENST00000475638	ENST00000495702		TCGA	LD	BRCA	TCGA-BH-A0HI-01A	COG5	chr7	107052947	-	CEP41	chr7	130034807	-
In-frame	ENST00000341502	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341502	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341502	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341502	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341502	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341502	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341502	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000341502	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000341749	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000341749	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000557038	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000557038	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396165	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000396165	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000396158	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000396158	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000280083	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000280083	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000556148	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000556148	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000348007	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000348007	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
In-frame	ENST00000553352	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
5CDS-intron	ENST00000553352	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000536774		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000327441		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000539062		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000556451		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000396294		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000545536		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-3CDS	ENST00000553383	ENST00000537471		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
intron-intron	ENST00000553383	ENST00000539174		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	CTAGE5	chr14	39748741	+	MIPOL1	chr14	37838722	+
Frame-shit	ENST00000534064	ENST00000376217		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
Frame-shit	ENST00000534064	ENST00000315938		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
5CDS-intron	ENST00000534064	ENST00000527489		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
Frame-shit	ENST00000535943	ENST00000376217		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
Frame-shit	ENST00000535943	ENST00000315938		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
5CDS-intron	ENST00000535943	ENST00000527489		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-3CDS	ENST00000525931	ENST00000376217		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-3CDS	ENST00000525931	ENST00000315938		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-intron	ENST00000525931	ENST00000527489		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-3CDS	ENST00000529807	ENST00000376217		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-3CDS	ENST00000529807	ENST00000315938		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-intron	ENST00000529807	ENST00000527489		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-3CDS	ENST00000527522	ENST00000376217		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-3CDS	ENST00000527522	ENST00000315938		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
intron-intron	ENST00000527522	ENST00000527489		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	INTS4	chr11	77618763	-	GDPD4	chr11	76944217	-
In-frame	ENST00000535781	ENST00000252997		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	PRPF6	chr20	62631112	+	GATA5	chr20	61041607	-
In-frame	ENST00000315872	ENST00000481195		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	ROCK2	chr2	11484122	-	PPP2CA	chr5	133541822	-
5CDS-5UTR	ENST00000315872	ENST00000231504		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	ROCK2	chr2	11484122	-	PPP2CA	chr5	133541822	-
intron-3CDS	ENST00000462366	ENST00000481195		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	ROCK2	chr2	11484122	-	PPP2CA	chr5	133541822	-
intron-5UTR	ENST00000462366	ENST00000231504		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	ROCK2	chr2	11484122	-	PPP2CA	chr5	133541822	-
intron-3CDS	ENST00000401753	ENST00000481195		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	ROCK2	chr2	11484122	-	PPP2CA	chr5	133541822	-
intron-5UTR	ENST00000401753	ENST00000231504		TCGA	LD	BRCA	TCGA-BH-A0HL-01A	ROCK2	chr2	11484122	-	PPP2CA	chr5	133541822	-
Frame-shit	ENST00000401998	ENST00000249601		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000401998	ENST00000374170		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000401998	ENST00000374172		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000401998	ENST00000417247		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000401998	ENST00000435790		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000401998	ENST00000417912		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000401998	ENST00000491108		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000401998	ENST00000477708		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000361114	ENST00000249601		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000361114	ENST00000374170		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000361114	ENST00000374172		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000361114	ENST00000417247		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000361114	ENST00000435790		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000361114	ENST00000417912		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000361114	ENST00000491108		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000361114	ENST00000477708		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398761	ENST00000249601		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398761	ENST00000374170		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398761	ENST00000374172		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000398761	ENST00000417247		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398761	ENST00000435790		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398761	ENST00000417912		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000398761	ENST00000491108		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000398761	ENST00000477708		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000418483	ENST00000249601		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000418483	ENST00000374170		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000418483	ENST00000374172		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000418483	ENST00000417247		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000418483	ENST00000435790		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000418483	ENST00000417912		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000418483	ENST00000491108		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000418483	ENST00000477708		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000398763	ENST00000249601		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398763	ENST00000374170		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398763	ENST00000374172		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
Frame-shit	ENST00000398763	ENST00000417247		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000398763	ENST00000435790		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
In-frame	ENST00000398763	ENST00000417912		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000398763	ENST00000491108		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000398763	ENST00000477708		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-3CDS	ENST00000604025	ENST00000249601		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-3CDS	ENST00000604025	ENST00000374170		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-3CDS	ENST00000604025	ENST00000374172		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-3CDS	ENST00000604025	ENST00000417247		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-3CDS	ENST00000604025	ENST00000435790		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-3CDS	ENST00000604025	ENST00000417912		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-intron	ENST00000604025	ENST00000491108		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
intron-intron	ENST00000604025	ENST00000477708		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	MICU1	chr10	74167687	-	ARHGAP22	chr10	49654662	-
5CDS-intron	ENST00000361368	ENST00000496335		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	SMURF1	chr7	98741349	-	PDAP1	chr7	98995636	-
5CDS-intron	ENST00000361368	ENST00000350498		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	SMURF1	chr7	98741349	-	PDAP1	chr7	98995636	-
5CDS-intron	ENST00000361125	ENST00000496335		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	SMURF1	chr7	98741349	-	PDAP1	chr7	98995636	-
5CDS-intron	ENST00000361125	ENST00000350498		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	SMURF1	chr7	98741349	-	PDAP1	chr7	98995636	-
intron-intron	ENST00000480055	ENST00000496335		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	SMURF1	chr7	98741349	-	PDAP1	chr7	98995636	-
intron-intron	ENST00000480055	ENST00000350498		TCGA	LD	BRCA	TCGA-BH-A0HU-01A	SMURF1	chr7	98741349	-	PDAP1	chr7	98995636	-
Frame-shit	ENST00000505330	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000505330	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000504381	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000504381	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000507488	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000507488	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000393221	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000393221	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000533801	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000533801	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000510168	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000510168	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000508532	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000508532	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000504948	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000504948	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000513801	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000513801	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000328560	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000328560	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000428331	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000428331	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000359644	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000359644	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
Frame-shit	ENST00000422190	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-intron	ENST00000422190	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
intron-3CDS	ENST00000509150	ENST00000221347		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
intron-intron	ENST00000509150	ENST00000595713		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	ATP2C1	chr3	130678185	+	FCGBP	chr19	40389793	-
5CDS-5UTR	ENST00000470610	ENST00000309922		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	EPHA6	chr3	96706837	+	TRMT10C	chr3	101283614	+
5CDS-5UTR	ENST00000389672	ENST00000309922		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	EPHA6	chr3	96706837	+	TRMT10C	chr3	101283614	+
5CDS-5UTR	ENST00000542517	ENST00000309922		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	EPHA6	chr3	96706837	+	TRMT10C	chr3	101283614	+
intron-5UTR	ENST00000514100	ENST00000309922		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	EPHA6	chr3	96706837	+	TRMT10C	chr3	101283614	+
intron-5UTR	ENST00000502694	ENST00000309922		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	EPHA6	chr3	96706837	+	TRMT10C	chr3	101283614	+
intron-5UTR	ENST00000442602	ENST00000309922		TCGA	LD	BRCA	TCGA-BH-A0HW-01A	EPHA6	chr3	96706837	+	TRMT10C	chr3	101283614	+
3UTR-intron	ENST00000409419	ENST00000589876		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409419	ENST00000245925		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409419	ENST00000536630		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409419	ENST00000587152		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409419	ENST00000586902		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409587	ENST00000589876		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409587	ENST00000245925		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409587	ENST00000536630		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409587	ENST00000587152		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409587	ENST00000586902		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
intron-intron	ENST00000594085	ENST00000589876		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
intron-intron	ENST00000594085	ENST00000245925		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
intron-intron	ENST00000594085	ENST00000536630		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
intron-intron	ENST00000594085	ENST00000587152		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
intron-intron	ENST00000594085	ENST00000586902		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409735	ENST00000589876		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409735	ENST00000245925		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409735	ENST00000536630		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409735	ENST00000587152		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409735	ENST00000586902		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000356508	ENST00000589876		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000356508	ENST00000245925		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000356508	ENST00000536630		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000356508	ENST00000587152		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000356508	ENST00000586902		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409281	ENST00000589876		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409281	ENST00000245925		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409281	ENST00000536630		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409281	ENST00000587152		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
3UTR-intron	ENST00000409281	ENST00000586902		TCGA	LD	BRCA	TCGA-BH-A0HX-01A	PLD3	chr19	40884130	+	EML2	chr19	46113046	-
5CDS-intron	ENST00000355272	ENST00000596019		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000355272	ENST00000397162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000355272	ENST00000397165		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000355272	ENST00000358523		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000355272	ENST00000595736		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000355272	ENST00000597972		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000355272	ENST00000593468		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000355272	ENST00000599240		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000356926	ENST00000596019		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000356926	ENST00000397162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000356926	ENST00000397165		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000356926	ENST00000358523		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000356926	ENST00000595736		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000356926	ENST00000597972		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000356926	ENST00000593468		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000356926	ENST00000599240		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000350812	ENST00000596019		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000350812	ENST00000397162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000350812	ENST00000397165		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000350812	ENST00000358523		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-5UTR	ENST00000350812	ENST00000595736		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-5UTR	ENST00000350812	ENST00000597972		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-5UTR	ENST00000350812	ENST00000593468		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000350812	ENST00000599240		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000345016	ENST00000596019		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000345016	ENST00000397162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000345016	ENST00000397165		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000345016	ENST00000358523		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000345016	ENST00000595736		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000345016	ENST00000597972		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-5UTR	ENST00000345016	ENST00000593468		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
5CDS-intron	ENST00000345016	ENST00000599240		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000590683	ENST00000596019		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000590683	ENST00000397162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000590683	ENST00000397165		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000590683	ENST00000358523		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-5UTR	ENST00000590683	ENST00000595736		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-5UTR	ENST00000590683	ENST00000597972		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-5UTR	ENST00000590683	ENST00000593468		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000590683	ENST00000599240		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	AP3D1	chr19	2132470	-	ZNF682	chr19	20118084	-
intron-intron	ENST00000357754	ENST00000537871		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	C17orf102	chr17	32906098	-	RARRES3	chr11	63306988	+
intron-intron	ENST00000357754	ENST00000439013		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	C17orf102	chr17	32906098	-	RARRES3	chr11	63306988	+
intron-intron	ENST00000357754	ENST00000255688		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	C17orf102	chr17	32906098	-	RARRES3	chr11	63306988	+
intron-intron	ENST00000357754	ENST00000354445		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	C17orf102	chr17	32906098	-	RARRES3	chr11	63306988	+
In-frame	ENST00000394303	ENST00000420843		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000394303	ENST00000393505		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000394303	ENST00000360025		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000394310	ENST00000420843		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000394310	ENST00000393505		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000394310	ENST00000360025		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000344140	ENST00000420843		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000344140	ENST00000393505		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
In-frame	ENST00000344140	ENST00000360025		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
5UTR-3CDS	ENST00000582877	ENST00000420843		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
5UTR-3CDS	ENST00000582877	ENST00000393505		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
5UTR-3CDS	ENST00000582877	ENST00000360025		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CACNB1	chr17	37343046	-	ARRB1	chr11	74985255	-
Frame-shit	ENST00000421999	ENST00000340360		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
5CDS-5UTR	ENST00000421999	ENST00000321448		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
5CDS-5UTR	ENST00000421999	ENST00000527087		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
5CDS-intron	ENST00000421999	ENST00000533598		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
3UTR-3CDS	ENST00000496116	ENST00000340360		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
3UTR-5UTR	ENST00000496116	ENST00000321448		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
3UTR-5UTR	ENST00000496116	ENST00000527087		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
3UTR-intron	ENST00000496116	ENST00000533598		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
intron-3CDS	ENST00000489081	ENST00000340360		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
intron-5UTR	ENST00000489081	ENST00000321448		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
intron-5UTR	ENST00000489081	ENST00000527087		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
intron-intron	ENST00000489081	ENST00000533598		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	CMSS1	chr3	99536887	+	XRRA1	chr11	74618318	-
5CDS-intron	ENST00000377809	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377809	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000377809	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377809	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377809	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377809	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377809	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377809	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000402010	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000402010	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000413835	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000413835	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000377810	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000377810	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000315032	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000315032	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000508192	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000508192	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000361128	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000361128	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000350490	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000350490	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000502399	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000502399	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000509502	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000509502	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000513765	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000513765	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000408948	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000408948	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000341307		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000356000		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-3UTR	ENST00000425897	ENST00000538995		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000377819		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000339997		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000540798		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000537981		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5CDS-intron	ENST00000425897	ENST00000354497		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	MARK2	chr11	63672515	+	RTN3	chr11	63481443	+
5UTR-5UTR	ENST00000336308	ENST00000247271		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-intron	ENST00000336308	ENST00000584094		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
3UTR-5UTR	ENST00000578232	ENST00000247271		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
3UTR-intron	ENST00000578232	ENST00000584094		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-5UTR	ENST00000544210	ENST00000247271		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-intron	ENST00000544210	ENST00000584094		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-5UTR	ENST00000394250	ENST00000247271		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-intron	ENST00000394250	ENST00000584094		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-5UTR	ENST00000580611	ENST00000247271		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5UTR-intron	ENST00000580611	ENST00000584094		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STARD3	chr17	37793484	+	OMG	chr17	29623355	-
5CDS-5UTR	ENST00000358794	ENST00000540342		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000542092		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000349767		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000393592		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000393591		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000540124		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000393590		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000358794	ENST00000538328		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000540342		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000542092		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000349767		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000393592		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000393591		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000540124		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000393590		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000305218	ENST00000538328		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000540342		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000542092		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000349767		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000393592		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000393591		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000540124		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000393590		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
5CDS-5UTR	ENST00000538945	ENST00000538328		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000540342		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000542092		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000349767		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000393592		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000393591		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000540124		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000393590		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000543847	ENST00000538328		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000540342		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000542092		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000349767		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000393592		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000393591		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000540124		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000393590		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
intron-5UTR	ENST00000540501	ENST00000538328		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	STIP1	chr11	63971094	+	P2RY6	chr11	73007530	+
In-frame	ENST00000278550	ENST00000534064		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
In-frame	ENST00000278550	ENST00000535943		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000278550	ENST00000525931		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000278550	ENST00000529807		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000278550	ENST00000527522		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000533038	ENST00000534064		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000533038	ENST00000535943		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
intron-intron	ENST00000533038	ENST00000525931		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
intron-intron	ENST00000533038	ENST00000529807		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
intron-intron	ENST00000533038	ENST00000527522		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TENM4	chr11	78600830	-	INTS4	chr11	77594998	-
5UTR-3CDS	ENST00000541110	ENST00000304611		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000541110	ENST00000244546		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000372917	ENST00000304611		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000372917	ENST00000244546		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000372922	ENST00000304611		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000372922	ENST00000244546		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000340840	ENST00000304611		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000340840	ENST00000244546		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000354325	ENST00000304611		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
5UTR-3CDS	ENST00000354325	ENST00000244546		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42418915	-	PEX6	chr6	42942776	-
intron-3CDS	ENST00000541110	ENST00000542001		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000541110	ENST00000416670		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000541110	ENST00000321897		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000541110	ENST00000541562		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000541110	ENST00000476162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000547340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000450090		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000549458		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000475174		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000550773		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000383540		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000552560		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000489340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000551709		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000415079		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000546854		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000541110	ENST00000462929		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000542001		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000416670		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000321897		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372917	ENST00000541562		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000372917	ENST00000476162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000547340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000450090		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000549458		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000475174		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000550773		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000383540		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000552560		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000489340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000551709		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000415079		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000546854		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372917	ENST00000462929		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000542001		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000416670		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000321897		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000372922	ENST00000541562		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000372922	ENST00000476162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000547340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000450090		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000549458		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000475174		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000550773		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000383540		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000552560		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000489340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000551709		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000415079		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000546854		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000372922	ENST00000462929		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000340840	ENST00000542001		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000340840	ENST00000416670		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000340840	ENST00000321897		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000340840	ENST00000541562		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000340840	ENST00000476162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000547340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000450090		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000549458		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000475174		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000550773		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000383540		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000552560		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000489340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000551709		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000415079		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000546854		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000340840	ENST00000462929		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000354325	ENST00000542001		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000354325	ENST00000416670		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000354325	ENST00000321897		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000354325	ENST00000541562		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3UTR	ENST00000354325	ENST00000476162		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000547340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000450090		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000549458		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000475174		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000550773		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000383540		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000552560		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000489340		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000551709		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000415079		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000546854		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-intron	ENST00000354325	ENST00000462929		TCGA	LD	BRCA	TCGA-BH-A0HY-01A	TRERF1	chr6	42324253	-	VARS2	chr6	30893321	+
intron-3CDS	ENST00000309137	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000309137	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000309137	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000309137	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000309137	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000309137	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000309137	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000309137	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000389447	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000389447	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000389447	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000566077	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000566077	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000566077	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000566077	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000566077	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000566077	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000566077	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000566077	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000569266	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000569266	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000569266	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567439	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567439	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567439	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567439	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567439	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000567439	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000567439	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000567439	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000564108	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000564108	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000564108	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000564108	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000564108	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000564108	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000564108	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000564108	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000438132		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000542263		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000417362		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000251143		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000543152		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3CDS	ENST00000562400	ENST00000448695		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-3UTR	ENST00000562400	ENST00000544275		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
intron-intron	ENST00000562400	ENST00000538853		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	FAM192A	chr16	57219943	-	C16orf62	chr16	19663298	+
In-frame	ENST00000402285	ENST00000532114		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000402285	ENST00000337908		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000402285	ENST00000355131		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000402285	ENST00000395016		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000272317	ENST00000532114		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000272317	ENST00000337908		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000272317	ENST00000355131		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000272317	ENST00000395016		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000404735	ENST00000532114		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000404735	ENST00000337908		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000404735	ENST00000355131		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000404735	ENST00000395016		TCGA	LD	BRCA	TCGA-BH-A0RX-01A	RPS27A	chr2	55462098	+	MS4A4A	chr11	60064670	+
In-frame	ENST00000531380	ENST00000545249		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	FZD4	chr11	86665843	-	LAMTOR1	chr11	71810302	-
In-frame	ENST00000531380	ENST00000535107		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	FZD4	chr11	86665843	-	LAMTOR1	chr11	71810302	-
In-frame	ENST00000531380	ENST00000278671		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	FZD4	chr11	86665843	-	LAMTOR1	chr11	71810302	-
In-frame	ENST00000531380	ENST00000538404		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	FZD4	chr11	86665843	-	LAMTOR1	chr11	71810302	-
5CDS-5UTR	ENST00000531380	ENST00000539797		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	FZD4	chr11	86665843	-	LAMTOR1	chr11	71810302	-
In-frame	ENST00000369483	ENST00000398645		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
In-frame	ENST00000369483	ENST00000529006		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000369483	ENST00000526258		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000369483	ENST00000308783		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000369483	ENST00000530342		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
In-frame	ENST00000369486	ENST00000398645		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
In-frame	ENST00000369486	ENST00000529006		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000369486	ENST00000526258		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000369486	ENST00000308783		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000369486	ENST00000530342		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
In-frame	ENST00000318837	ENST00000398645		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
In-frame	ENST00000318837	ENST00000529006		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000318837	ENST00000526258		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000318837	ENST00000308783		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000318837	ENST00000530342		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	IGSF3	chr1	117208906	-	KDM2A	chr11	66947550	+
Frame-shit	ENST00000294304	ENST00000261448		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	LRP5	chr11	68125315	+	CASQ2	chr1	116287533	-
Frame-shit	ENST00000294304	ENST00000456138		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	LRP5	chr11	68125315	+	CASQ2	chr1	116287533	-
5CDS-intron	ENST00000294304	ENST00000488931		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	LRP5	chr11	68125315	+	CASQ2	chr1	116287533	-
intron-3CDS	ENST00000529481	ENST00000261448		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	LRP5	chr11	68125315	+	CASQ2	chr1	116287533	-
intron-3CDS	ENST00000529481	ENST00000456138		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	LRP5	chr11	68125315	+	CASQ2	chr1	116287533	-
intron-intron	ENST00000529481	ENST00000488931		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	LRP5	chr11	68125315	+	CASQ2	chr1	116287533	-
In-frame	ENST00000369617	ENST00000256646		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000369617	ENST00000602566		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
5CDS-intron	ENST00000369617	ENST00000493703		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000307546	ENST00000256646		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000307546	ENST00000602566		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
5CDS-intron	ENST00000307546	ENST00000493703		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000369615	ENST00000256646		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000369615	ENST00000602566		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
5CDS-intron	ENST00000369615	ENST00000493703		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000369611	ENST00000256646		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
In-frame	ENST00000369611	ENST00000602566		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
5CDS-intron	ENST00000369611	ENST00000493703		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
3UTR-3CDS	ENST00000486456	ENST00000256646		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
3UTR-3CDS	ENST00000486456	ENST00000602566		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
3UTR-intron	ENST00000486456	ENST00000493703		TCGA	LD	BRCA	TCGA-BH-A0W3-01A	MAGI3	chr1	113933971	+	NOTCH2	chr1	120539955	-
Frame-shit	ENST00000356015	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000356015	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
Frame-shit	ENST00000432560	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000432560	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
Frame-shit	ENST00000357586	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000357586	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
Frame-shit	ENST00000405198	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000405198	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
Frame-shit	ENST00000317368	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000317368	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
Frame-shit	ENST00000402502	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000402502	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
Frame-shit	ENST00000415447	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5CDS-5UTR	ENST00000415447	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5UTR-3CDS	ENST00000472057	ENST00000397906		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
5UTR-5UTR	ENST00000472057	ENST00000490475		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	AP1B1	chr22	29730254	-	TTC28	chr22	28693840	-
In-frame	ENST00000353533	ENST00000216121		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	MAP2K4	chr17	11924318	+	NIPSNAP1	chr22	29957851	-
5CDS-intron	ENST00000353533	ENST00000494966		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	MAP2K4	chr17	11924318	+	NIPSNAP1	chr22	29957851	-
In-frame	ENST00000415385	ENST00000216121		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	MAP2K4	chr17	11924318	+	NIPSNAP1	chr22	29957851	-
5CDS-intron	ENST00000415385	ENST00000494966		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	MAP2K4	chr17	11924318	+	NIPSNAP1	chr22	29957851	-
intron-3CDS	ENST00000581941	ENST00000216121		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	MAP2K4	chr17	11924318	+	NIPSNAP1	chr22	29957851	-
intron-intron	ENST00000581941	ENST00000494966		TCGA	LD	BRCA	TCGA-BH-A0W7-01A	MAP2K4	chr17	11924318	+	NIPSNAP1	chr22	29957851	-
Frame-shit	ENST00000378618	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378618	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000378618	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000378618	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000378618	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000536126	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-intron	ENST00000536126	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-intron	ENST00000536126	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-intron	ENST00000536126	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000278460	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000278460	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000278460	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000278460	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000395460	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000395460	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000395460	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000395460	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000378615	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000378615	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000378615	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5CDS-intron	ENST00000378615	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-3CDS	ENST00000543718	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-intron	ENST00000543718	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-intron	ENST00000543718	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
5UTR-intron	ENST00000543718	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000394609		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000405240		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000357376		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000317610		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000357732		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000337526		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000394611		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-3CDS	ENST00000527268	ENST00000404909		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-intron	ENST00000527268	ENST00000486085		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-intron	ENST00000527268	ENST00000354474		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
intron-intron	ENST00000527268	ENST00000402434		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	C11orf49	chr11	46958402	+	RTN4	chr2	55201900	-
Frame-shit	ENST00000399429	ENST00000541925		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-intron	ENST00000399429	ENST00000542156		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-intron	ENST00000399429	ENST00000370390		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-intron	ENST00000399429	ENST00000451863		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-intron	ENST00000399429	ENST00000544228		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-intron	ENST00000399429	ENST00000445323		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-intron	ENST00000399429	ENST00000538506		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	COL28A1	chr7	7491950	-	MTMR1	chrX	149905067	+
5CDS-5UTR	ENST00000388968	ENST00000407325		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	HSPD1	chr2	198358048	-	GPR1	chr2	207041999	-
5CDS-5UTR	ENST00000388968	ENST00000437420		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	HSPD1	chr2	198358048	-	GPR1	chr2	207041999	-
5CDS-5UTR	ENST00000345042	ENST00000407325		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	HSPD1	chr2	198358048	-	GPR1	chr2	207041999	-
5CDS-5UTR	ENST00000345042	ENST00000437420		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	HSPD1	chr2	198358048	-	GPR1	chr2	207041999	-
intron-5UTR	ENST00000544407	ENST00000407325		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	HSPD1	chr2	198358048	-	GPR1	chr2	207041999	-
intron-5UTR	ENST00000544407	ENST00000437420		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	HSPD1	chr2	198358048	-	GPR1	chr2	207041999	-
Frame-shit	ENST00000261438	ENST00000401642		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	KLF3	chr4	38691500	+	SCFD2	chr4	54011749	-
Frame-shit	ENST00000261438	ENST00000388940		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	KLF3	chr4	38691500	+	SCFD2	chr4	54011749	-
Frame-shit	ENST00000514033	ENST00000401642		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	KLF3	chr4	38691500	+	SCFD2	chr4	54011749	-
Frame-shit	ENST00000514033	ENST00000388940		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	KLF3	chr4	38691500	+	SCFD2	chr4	54011749	-
5CDS-intron	ENST00000358598	ENST00000462705		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000393785		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000481632		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000471418		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000357258		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000464560		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000488663		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000358598	ENST00000474710		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000462705		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000393785		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000481632		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000471418		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000357258		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000464560		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000488663		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000392711	ENST00000474710		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000462705		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000393785		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000481632		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000471418		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000357258		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000464560		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000488663		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000589228	ENST00000474710		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000462705		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000393785		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000481632		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000471418		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000357258		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000464560		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000488663		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000536854	ENST00000474710		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000462705		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000393785		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000481632		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000471418		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000357258		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000464560		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000488663		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000586397	ENST00000474710		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000462705		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000393785		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000481632		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000471418		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000357258		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000464560		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000488663		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
5CDS-intron	ENST00000588188	ENST00000474710		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	PRKAR1A	chr17	66521099	+	ZBTB20	chr3	114746421	-
Frame-shit	ENST00000415609	ENST00000398540		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000415609	ENST00000542259		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000415609	ENST00000497757		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000415609	ENST00000478263		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000349511	ENST00000398540		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000349511	ENST00000542259		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000349511	ENST00000497757		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000349511	ENST00000478263		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000361055	ENST00000398540		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000361055	ENST00000542259		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000361055	ENST00000497757		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000361055	ENST00000478263		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5UTR-3CDS	ENST00000540295	ENST00000398540		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5UTR-3CDS	ENST00000540295	ENST00000542259		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5UTR-intron	ENST00000540295	ENST00000497757		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
5UTR-intron	ENST00000540295	ENST00000478263		TCGA	LD	BRCA	TCGA-BH-A0WA-01A	UBA3	chr3	69126949	-	FRMD4B	chr3	69225807	-
In-frame	ENST00000379310	ENST00000267163		TCGA	LD	BRCA	TCGA-BH-A18G-01A	VWA8	chr13	42439872	-	RB1	chr13	48916735	+
5CDS-intron	ENST00000379310	ENST00000484879		TCGA	LD	BRCA	TCGA-BH-A18G-01A	VWA8	chr13	42439872	-	RB1	chr13	48916735	+
In-frame	ENST00000281496	ENST00000267163		TCGA	LD	BRCA	TCGA-BH-A18G-01A	VWA8	chr13	42439872	-	RB1	chr13	48916735	+
5CDS-intron	ENST00000281496	ENST00000484879		TCGA	LD	BRCA	TCGA-BH-A18G-01A	VWA8	chr13	42439872	-	RB1	chr13	48916735	+
intron-3CDS	ENST00000478987	ENST00000267163		TCGA	LD	BRCA	TCGA-BH-A18G-01A	VWA8	chr13	42439872	-	RB1	chr13	48916735	+
intron-intron	ENST00000478987	ENST00000484879		TCGA	LD	BRCA	TCGA-BH-A18G-01A	VWA8	chr13	42439872	-	RB1	chr13	48916735	+
Frame-shit	ENST00000369617	ENST00000367942		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
5CDS-3UTR	ENST00000369617	ENST00000476437		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
Frame-shit	ENST00000307546	ENST00000367942		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
5CDS-3UTR	ENST00000307546	ENST00000476437		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
Frame-shit	ENST00000369615	ENST00000367942		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
5CDS-3UTR	ENST00000369615	ENST00000476437		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
Frame-shit	ENST00000369611	ENST00000367942		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
5CDS-3UTR	ENST00000369611	ENST00000476437		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
3UTR-3CDS	ENST00000486456	ENST00000367942		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
3UTR-3UTR	ENST00000486456	ENST00000476437		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAGI3	chr1	114092253	+	ATF6	chr1	161829997	+
Frame-shit	ENST00000550735	ENST00000299314		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
Frame-shit	ENST00000550735	ENST00000549940		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
5CDS-intron	ENST00000550735	ENST00000392919		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
5CDS-intron	ENST00000550735	ENST00000549165		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
Frame-shit	ENST00000551404	ENST00000299314		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
Frame-shit	ENST00000551404	ENST00000549940		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
5CDS-intron	ENST00000551404	ENST00000392919		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
5CDS-intron	ENST00000551404	ENST00000549165		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
intron-3CDS	ENST00000547305	ENST00000299314		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
intron-3CDS	ENST00000547305	ENST00000549940		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
intron-intron	ENST00000547305	ENST00000392919		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
intron-intron	ENST00000547305	ENST00000549165		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
3UTR-3CDS	ENST00000546394	ENST00000299314		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
3UTR-3CDS	ENST00000546394	ENST00000549940		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
3UTR-intron	ENST00000546394	ENST00000392919		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
3UTR-intron	ENST00000546394	ENST00000549165		TCGA	LD	BRCA	TCGA-BH-A18H-01A	MAPKAPK5	chr12	112304035	+	GNPTAB	chr12	102183835	-
5UTR-intron	ENST00000461988	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000461988	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000461988	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000461988	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000461988	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000419840	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000419840	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000419840	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000419840	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000419840	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000394893	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000394893	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000394893	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000394893	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000394893	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000475509	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000475509	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000475509	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000475509	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000475509	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000545601	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000545601	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000545601	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000545601	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000545601	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000450476	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000450476	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000450476	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000450476	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000450476	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000439269	ENST00000461263		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000439269	ENST00000315758		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000439269	ENST00000443006		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000439269	ENST00000490105		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000439269	ENST00000432020		TCGA	LD	BRCA	TCGA-BH-A18H-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5CDS-5UTR	ENST00000263433	ENST00000537645		TCGA	LD	BRCA	TCGA-BH-A18H-01A	PPP1R12C	chr19	55614777	-	ZNF460	chr19	57795919	+
5CDS-5UTR	ENST00000263433	ENST00000360338		TCGA	LD	BRCA	TCGA-BH-A18H-01A	PPP1R12C	chr19	55614777	-	ZNF460	chr19	57795919	+
5CDS-5UTR	ENST00000376393	ENST00000537645		TCGA	LD	BRCA	TCGA-BH-A18H-01A	PPP1R12C	chr19	55614777	-	ZNF460	chr19	57795919	+
5CDS-5UTR	ENST00000376393	ENST00000360338		TCGA	LD	BRCA	TCGA-BH-A18H-01A	PPP1R12C	chr19	55614777	-	ZNF460	chr19	57795919	+
5CDS-5UTR	ENST00000435544	ENST00000537645		TCGA	LD	BRCA	TCGA-BH-A18H-01A	PPP1R12C	chr19	55614777	-	ZNF460	chr19	57795919	+
5CDS-5UTR	ENST00000435544	ENST00000360338		TCGA	LD	BRCA	TCGA-BH-A18H-01A	PPP1R12C	chr19	55614777	-	ZNF460	chr19	57795919	+
5CDS-intron	ENST00000355303	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
5CDS-intron	ENST00000398543	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
5CDS-intron	ENST00000538023	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
5CDS-intron	ENST00000316296	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
5CDS-intron	ENST00000530676	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
intron-intron	ENST00000531349	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
intron-intron	ENST00000525494	ENST00000529093		TCGA	LD	BRCA	TCGA-BH-A18I-01A	ANO1	chr11	69934190	+	ENPP7P8	chr11	71491152	+
intron-5UTR	ENST00000521282	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
intron-5UTR	ENST00000521282	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
intron-3UTR	ENST00000521282	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5CDS-5UTR	ENST00000432471	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5CDS-5UTR	ENST00000432471	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5CDS-3UTR	ENST00000432471	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5CDS-5UTR	ENST00000287322	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5CDS-5UTR	ENST00000287322	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5CDS-3UTR	ENST00000287322	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A18I-01A	BAG4	chr8	38065284	+	PLEKHA2	chr8	38775425	+
5UTR-3CDS	ENST00000311172	ENST00000540367		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000311172	ENST00000376618		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000311172	ENST00000265641		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000311172	ENST00000539743		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-intron	ENST00000311172	ENST00000537756		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-intron	ENST00000311172	ENST00000538994		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409314	ENST00000540367		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409314	ENST00000376618		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409314	ENST00000265641		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409314	ENST00000539743		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5CDS-intron	ENST00000409314	ENST00000537756		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5CDS-intron	ENST00000409314	ENST00000538994		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409418	ENST00000540367		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409418	ENST00000376618		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409418	ENST00000265641		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
In-frame	ENST00000409418	ENST00000539743		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5CDS-intron	ENST00000409418	ENST00000537756		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5CDS-intron	ENST00000409418	ENST00000538994		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000458644	ENST00000540367		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000458644	ENST00000376618		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000458644	ENST00000265641		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000458644	ENST00000539743		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-intron	ENST00000458644	ENST00000537756		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-intron	ENST00000458644	ENST00000538994		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000409853	ENST00000540367		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000409853	ENST00000376618		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000409853	ENST00000265641		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-3CDS	ENST00000409853	ENST00000539743		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-intron	ENST00000409853	ENST00000537756		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5UTR-intron	ENST00000409853	ENST00000538994		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
intron-3CDS	ENST00000409263	ENST00000540367		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
intron-3CDS	ENST00000409263	ENST00000376618		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
intron-3CDS	ENST00000409263	ENST00000265641		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
intron-3CDS	ENST00000409263	ENST00000539743		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
intron-intron	ENST00000409263	ENST00000537756		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
intron-intron	ENST00000409263	ENST00000538994		TCGA	LD	BRCA	TCGA-BH-A18I-01A	FCHSD2	chr11	72794740	-	CPT1A	chr11	68562379	-
5CDS-intron	ENST00000319023	ENST00000398309		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000376104		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000418306		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000280241		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000543673		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000376106		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000330014		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000537455		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000524982		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000532653		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000531015		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000398301		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000426717		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000404783		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000398304		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000530800		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000319023	ENST00000472545		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000398309		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000376104		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000418306		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000280241		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000543673		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000376106		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000330014		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000537455		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000524982		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000532653		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000531015		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000398301		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000426717		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000404783		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000398304		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000530800		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000539574	ENST00000472545		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000398309		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000376104		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000418306		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000280241		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000543673		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000376106		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000330014		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000537455		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000524982		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000532653		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000531015		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000398301		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000426717		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000404783		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000398304		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000530800		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000530055	ENST00000472545		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000398309		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000376104		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000418306		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000280241		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000543673		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000376106		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000330014		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000537455		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000524982		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000532653		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000531015		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000398301		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000426717		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000404783		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000398304		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000530800		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
intron-intron	ENST00000526039	ENST00000472545		TCGA	LD	BRCA	TCGA-BH-A18I-01A	NADSYN1	chr11	71202949	+	DLG2	chr11	84822779	-
5CDS-intron	ENST00000528896	ENST00000600439		TCGA	LD	BRCA	TCGA-BH-A18J-01A	KIAA0100	chr17	26955283	-	CYP4F23P	chr19	15694161	+
5CDS-intron	ENST00000544884	ENST00000600439		TCGA	LD	BRCA	TCGA-BH-A18J-01A	KIAA0100	chr17	26955283	-	CYP4F23P	chr19	15694161	+
5CDS-intron	ENST00000389003	ENST00000600439		TCGA	LD	BRCA	TCGA-BH-A18J-01A	KIAA0100	chr17	26955283	-	CYP4F23P	chr19	15694161	+
intron-intron	ENST00000579924	ENST00000600439		TCGA	LD	BRCA	TCGA-BH-A18J-01A	KIAA0100	chr17	26955283	-	CYP4F23P	chr19	15694161	+
5UTR-3CDS	ENST00000367176	ENST00000368985		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000367176	ENST00000448301		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-5UTR	ENST00000367176	ENST00000480760		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000367177	ENST00000368985		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000367177	ENST00000448301		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-5UTR	ENST00000367177	ENST00000480760		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000496057	ENST00000368985		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000496057	ENST00000448301		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5UTR-5UTR	ENST00000496057	ENST00000480760		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
intron-3CDS	ENST00000367175	ENST00000368985		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
intron-3CDS	ENST00000367175	ENST00000448301		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
intron-5UTR	ENST00000367175	ENST00000480760		TCGA	LD	BRCA	TCGA-BH-A18J-01A	LRRN2	chr1	204654448	-	CTSS	chr1	150730456	-
5CDS-5UTR	ENST00000427410	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000427410	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000447388	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000447388	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000425457	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000425457	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000456393	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000456393	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000372654	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000372654	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000372653	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000372653	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000372652	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000372652	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000372651	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000372651	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000440226	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000440226	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-5UTR	ENST00000308733	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
5CDS-intron	ENST00000308733	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
intron-5UTR	ENST00000483091	ENST00000367033		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
intron-intron	ENST00000483091	ENST00000483048		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NFYC	chr1	41204620	+	PLXNA2	chr1	208391347	-
intron-3CDS	ENST00000425241	ENST00000435459		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000425241	ENST00000383787		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000425241	ENST00000383785		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000425241	ENST00000383788		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000425241	ENST00000603752		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000425241	ENST00000383781		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000425241	ENST00000603808		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000425241	ENST00000383786		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000323373	ENST00000435459		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000323373	ENST00000383787		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000323373	ENST00000383785		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000323373	ENST00000383788		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000323373	ENST00000603752		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000323373	ENST00000383781		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000323373	ENST00000603808		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000323373	ENST00000383786		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000393102	ENST00000435459		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000393102	ENST00000383787		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000393102	ENST00000383785		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-3CDS	ENST00000393102	ENST00000383788		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000393102	ENST00000603752		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000393102	ENST00000383781		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000393102	ENST00000603808		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
5UTR-intron	ENST00000393102	ENST00000383786		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000435459		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000383787		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000383785		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000406272	ENST00000383788		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000603752		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000383781		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000603808		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000406272	ENST00000383786		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000435459		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000383787		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000383785		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-3CDS	ENST00000478572	ENST00000383788		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000603752		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000383781		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000603808		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
intron-intron	ENST00000478572	ENST00000383786		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NR2C2	chr3	15003999	+	COLQ	chr3	15531144	-
Frame-shit	ENST00000366978	ENST00000261455		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
Frame-shit	ENST00000366978	ENST00000535273		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
5CDS-5UTR	ENST00000366978	ENST00000471937		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
In-frame	ENST00000366977	ENST00000261455		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
In-frame	ENST00000366977	ENST00000535273		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
5CDS-5UTR	ENST00000366977	ENST00000471937		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
Frame-shit	ENST00000422588	ENST00000261455		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
Frame-shit	ENST00000422588	ENST00000535273		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
5CDS-5UTR	ENST00000422588	ENST00000471937		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
intron-3CDS	ENST00000366975	ENST00000261455		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
intron-3CDS	ENST00000366975	ENST00000535273		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
intron-5UTR	ENST00000366975	ENST00000471937		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
In-frame	ENST00000366976	ENST00000261455		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
In-frame	ENST00000366976	ENST00000535273		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
5CDS-5UTR	ENST00000366976	ENST00000471937		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
intron-3CDS	ENST00000473995	ENST00000261455		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
intron-3CDS	ENST00000473995	ENST00000535273		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
intron-5UTR	ENST00000473995	ENST00000471937		TCGA	LD	BRCA	TCGA-BH-A18J-01A	NSL1	chr1	212955714	-	TMEM206	chr1	212560442	-
In-frame	ENST00000359947	ENST00000420304		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000359947	ENST00000366820		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
5CDS-5UTR	ENST00000359947	ENST00000474493		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000438120	ENST00000420304		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000438120	ENST00000366820		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
5CDS-5UTR	ENST00000438120	ENST00000474493		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000372413	ENST00000420304		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000372413	ENST00000366820		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
5CDS-5UTR	ENST00000372413	ENST00000474493		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000372414	ENST00000420304		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
In-frame	ENST00000372414	ENST00000366820		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
5CDS-5UTR	ENST00000372414	ENST00000474493		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
intron-3CDS	ENST00000422171	ENST00000420304		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
intron-3CDS	ENST00000422171	ENST00000366820		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
intron-5UTR	ENST00000422171	ENST00000474493		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
intron-3CDS	ENST00000496447	ENST00000420304		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
intron-3CDS	ENST00000496447	ENST00000366820		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
intron-5UTR	ENST00000496447	ENST00000474493		TCGA	LD	BRCA	TCGA-BH-A18J-01A	PTPRF	chr1	44019612	+	LEFTY2	chr1	226127702	-
Frame-shit	ENST00000273038	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5CDS-5UTR	ENST00000273038	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5CDS-5UTR	ENST00000273038	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5CDS-5UTR	ENST00000273038	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5CDS-5UTR	ENST00000273038	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-3CDS	ENST00000430365	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000430365	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000430365	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000430365	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000430365	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5UTR-3CDS	ENST00000404339	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5UTR-5UTR	ENST00000404339	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5UTR-5UTR	ENST00000404339	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5UTR-5UTR	ENST00000404339	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
5UTR-5UTR	ENST00000404339	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-3CDS	ENST00000480288	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000480288	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000480288	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000480288	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000480288	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-3CDS	ENST00000413604	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000413604	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000413604	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000413604	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000413604	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-3CDS	ENST00000451674	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000451674	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000451674	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000451674	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000451674	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-3CDS	ENST00000424529	ENST00000383791		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000424529	ENST00000253688		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000424529	ENST00000426925		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000424529	ENST00000408919		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
intron-5UTR	ENST00000424529	ENST00000465894		TCGA	LD	BRCA	TCGA-BH-A18J-01A	VGLL4	chr3	11744445	-	SH3BP5	chr3	15311384	-
Frame-shit	ENST00000268616	ENST00000370189		TCGA	LD	BRCA	TCGA-BH-A18J-01A	ZCCHC14	chr16	87493614	-	SNX7	chr1	99225610	+
Frame-shit	ENST00000268616	ENST00000529992		TCGA	LD	BRCA	TCGA-BH-A18J-01A	ZCCHC14	chr16	87493614	-	SNX7	chr1	99225610	+
Frame-shit	ENST00000268616	ENST00000306121		TCGA	LD	BRCA	TCGA-BH-A18J-01A	ZCCHC14	chr16	87493614	-	SNX7	chr1	99225610	+
5CDS-intron	ENST00000268616	ENST00000473868		TCGA	LD	BRCA	TCGA-BH-A18J-01A	ZCCHC14	chr16	87493614	-	SNX7	chr1	99225610	+
5CDS-intron	ENST00000233146	ENST00000449601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000233146	ENST00000434431		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000543555	ENST00000449601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000543555	ENST00000434431		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000406134	ENST00000449601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000406134	ENST00000434431		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
intron-intron	ENST00000461394	ENST00000449601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
intron-intron	ENST00000461394	ENST00000434431		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MSH2	chr2	47635694	+	TMEM247	chr2	46711383	+
5CDS-5UTR	ENST00000472487	ENST00000375918		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-5UTR	ENST00000472487	ENST00000375920		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-5UTR	ENST00000472487	ENST00000375916		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000452949		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000416324		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000430282		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000426401		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000439902		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000426800		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000425856		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000422771		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000441436		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000419996		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000400157		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000383438		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000440956		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000443975		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000436931		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000430238		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000425177		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
5CDS-intron	ENST00000472487	ENST00000432598		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-5UTR	ENST00000493821	ENST00000375918		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-5UTR	ENST00000493821	ENST00000375920		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-5UTR	ENST00000493821	ENST00000375916		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000452949		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000416324		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000430282		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000426401		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000439902		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000426800		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000425856		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000422771		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000441436		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000419996		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000400157		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000383438		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000440956		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000443975		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000436931		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000430238		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000425177		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
intron-intron	ENST00000493821	ENST00000432598		TCGA	LD	BRCA	TCGA-BH-A18L-01A	MYSM1	chr1	59160801	-	APOM	chr6	31624249	+
Frame-shit	ENST00000585916	ENST00000588705		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
In-frame	ENST00000585916	ENST00000256433		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000545673	ENST00000588705		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000545673	ENST00000256433		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
Frame-shit	ENST00000324794	ENST00000588705		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
In-frame	ENST00000324794	ENST00000256433		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000590944	ENST00000588705		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000590944	ENST00000256433		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PIAS2	chr18	44470543	-	IER3IP1	chr18	44683908	-
intron-3CDS	ENST00000408388	ENST00000521243		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118165183	+
intron-intron	ENST00000408388	ENST00000521035		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118165183	+
intron-intron	ENST00000408388	ENST00000427715		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118165183	+
intron-intron	ENST00000408388	ENST00000519688		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118165183	+
intron-intron	ENST00000408388	ENST00000456015		TCGA	LD	BRCA	TCGA-BH-A18L-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118165183	+
5CDS-5UTR	ENST00000311160	ENST00000375654		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000311160	ENST00000417199		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000311160	ENST00000426095		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000311160	ENST00000456772		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000311160	ENST00000417601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000311160	ENST00000383390		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000355730	ENST00000375654		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000355730	ENST00000417199		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000355730	ENST00000426095		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000355730	ENST00000456772		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000355730	ENST00000417601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000355730	ENST00000383390		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000398879	ENST00000375654		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000398879	ENST00000417199		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000398879	ENST00000426095		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000398879	ENST00000456772		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000398879	ENST00000417601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000398879	ENST00000383390		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000442536	ENST00000375654		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000442536	ENST00000417199		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000442536	ENST00000426095		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000442536	ENST00000456772		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000442536	ENST00000417601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000442536	ENST00000383390		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000458317	ENST00000375654		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000458317	ENST00000417199		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000458317	ENST00000426095		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000458317	ENST00000456772		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000458317	ENST00000417601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000458317	ENST00000383390		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000474346	ENST00000375654		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000474346	ENST00000417199		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474346	ENST00000426095		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474346	ENST00000456772		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474346	ENST00000417601		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474346	ENST00000383390		TCGA	LD	BRCA	TCGA-BH-A18L-01A	TNS3	chr7	47319762	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000325722	ENST00000374974		TCGA	LD	BRCA	TCGA-BH-A18Q-01A	KIAA0319L	chr1	36019951	-	PAGE2B	chrX	55102467	+
5CDS-5UTR	ENST00000325722	ENST00000374971		TCGA	LD	BRCA	TCGA-BH-A18Q-01A	KIAA0319L	chr1	36019951	-	PAGE2B	chrX	55102467	+
intron-5UTR	ENST00000373266	ENST00000374974		TCGA	LD	BRCA	TCGA-BH-A18Q-01A	KIAA0319L	chr1	36019951	-	PAGE2B	chrX	55102467	+
intron-5UTR	ENST00000373266	ENST00000374971		TCGA	LD	BRCA	TCGA-BH-A18Q-01A	KIAA0319L	chr1	36019951	-	PAGE2B	chrX	55102467	+
intron-5UTR	ENST00000485551	ENST00000374974		TCGA	LD	BRCA	TCGA-BH-A18Q-01A	KIAA0319L	chr1	36019951	-	PAGE2B	chrX	55102467	+
intron-5UTR	ENST00000485551	ENST00000374971		TCGA	LD	BRCA	TCGA-BH-A18Q-01A	KIAA0319L	chr1	36019951	-	PAGE2B	chrX	55102467	+
Frame-shit	ENST00000299626	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000299626	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000299626	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000299626	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
Frame-shit	ENST00000376156	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000376156	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000376156	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000376156	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000532552	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000532552	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000532552	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000532552	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	ALG8	chr11	77850540	-	USP32	chr17	58422969	-
3UTR-5UTR	ENST00000577702	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
3UTR-5UTR	ENST00000577702	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
3UTR-5UTR	ENST00000577702	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
3UTR-5UTR	ENST00000577702	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
3UTR-5UTR	ENST00000577702	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
3UTR-intron	ENST00000577702	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000310827	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000310827	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000310827	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000310827	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000310827	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-intron	ENST00000310827	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000431926	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000431926	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000431926	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000431926	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000431926	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-intron	ENST00000431926	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000415273	ENST00000262291		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000415273	ENST00000537567		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000415273	ENST00000539763		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000415273	ENST00000536180		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000415273	ENST00000545362		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-intron	ENST00000415273	ENST00000588617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	DCAF7	chr17	61628176	+	VMP1	chr17	57808782	+
5CDS-3UTR	ENST00000583610	ENST00000281030		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000394294	ENST00000281030		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000264658	ENST00000281030		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000577399	ENST00000281030		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	THRSP	chr11	77778705	+
5CDS-5UTR	ENST00000583610	ENST00000332682		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	TRIM49B	chr11	49053148	+
5CDS-5UTR	ENST00000394294	ENST00000332682		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	TRIM49B	chr11	49053148	+
5CDS-5UTR	ENST00000264658	ENST00000332682		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	TRIM49B	chr11	49053148	+
intron-5UTR	ENST00000577399	ENST00000332682		TCGA	LD	BRCA	TCGA-BH-A18R-01A	FBXL20	chr17	37557614	-	TRIM49B	chr11	49053148	+
Frame-shit	ENST00000361924	ENST00000355303		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000361924	ENST00000398543		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000361924	ENST00000538023		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
In-frame	ENST00000361924	ENST00000316296		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000361924	ENST00000530676		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000361924	ENST00000531349		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
5CDS-intron	ENST00000361924	ENST00000525494		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000435830	ENST00000355303		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000435830	ENST00000398543		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000435830	ENST00000538023		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000435830	ENST00000316296		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000435830	ENST00000530676		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000435830	ENST00000531349		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-intron	ENST00000435830	ENST00000525494		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000444882	ENST00000355303		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000444882	ENST00000398543		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000444882	ENST00000538023		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000444882	ENST00000316296		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000444882	ENST00000530676		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000444882	ENST00000531349		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-intron	ENST00000444882	ENST00000525494		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000356847	ENST00000355303		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000356847	ENST00000398543		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000356847	ENST00000538023		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
In-frame	ENST00000356847	ENST00000316296		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000356847	ENST00000530676		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
Frame-shit	ENST00000356847	ENST00000531349		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
5CDS-intron	ENST00000356847	ENST00000525494		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOLGA4	chr3	37388787	+	ANO1	chr11	70009389	+
intron-3CDS	ENST00000467125	ENST00000369252		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-3CDS	ENST00000467125	ENST00000533213		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-3CDS	ENST00000467125	ENST00000277895		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-5UTR	ENST00000467125	ENST00000369266		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-5UTR	ENST00000467125	ENST00000392952		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-5UTR	ENST00000467125	ENST00000369253		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-intron	ENST00000467125	ENST00000477638		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
In-frame	ENST00000368498	ENST00000369252		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
In-frame	ENST00000368498	ENST00000533213		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
In-frame	ENST00000368498	ENST00000277895		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-5UTR	ENST00000368498	ENST00000369266		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-5UTR	ENST00000368498	ENST00000392952		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-5UTR	ENST00000368498	ENST00000369253		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-intron	ENST00000368498	ENST00000477638		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-3CDS	ENST00000535237	ENST00000369252		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-3CDS	ENST00000535237	ENST00000533213		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-3CDS	ENST00000535237	ENST00000277895		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-5UTR	ENST00000535237	ENST00000369266		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-5UTR	ENST00000535237	ENST00000392952		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-5UTR	ENST00000535237	ENST00000369253		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
intron-intron	ENST00000535237	ENST00000477638		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
In-frame	ENST00000052569	ENST00000369252		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
In-frame	ENST00000052569	ENST00000533213		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
In-frame	ENST00000052569	ENST00000277895		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-5UTR	ENST00000052569	ENST00000369266		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-5UTR	ENST00000052569	ENST00000392952		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-5UTR	ENST00000052569	ENST00000369253		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
5CDS-intron	ENST00000052569	ENST00000477638		TCGA	LD	BRCA	TCGA-BH-A18R-01A	GOPC	chr6	117900063	-	ABLIM1	chr10	116251637	-
Frame-shit	ENST00000184956	ENST00000328257		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000184956	ENST00000398427		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000184956	ENST00000542710		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
5CDS-intron	ENST00000184956	ENST00000543525		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000585976	ENST00000328257		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000585976	ENST00000398427		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000585976	ENST00000542710		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
5CDS-intron	ENST00000585976	ENST00000543525		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
intron-3CDS	ENST00000585712	ENST00000328257		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
intron-3CDS	ENST00000585712	ENST00000398427		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
intron-3UTR	ENST00000585712	ENST00000542710		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
intron-intron	ENST00000585712	ENST00000543525		TCGA	LD	BRCA	TCGA-BH-A18R-01A	HEATR6	chr17	58124670	-	PPME1	chr11	73914773	+
In-frame	ENST00000361170	ENST00000368198		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
In-frame	ENST00000361170	ENST00000368199		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
In-frame	ENST00000361170	ENST00000392306		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
5CDS-intron	ENST00000361170	ENST00000495306		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
intron-3CDS	ENST00000498755	ENST00000368198		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
intron-3CDS	ENST00000498755	ENST00000368199		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
intron-3CDS	ENST00000498755	ENST00000392306		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
intron-intron	ENST00000498755	ENST00000495306		TCGA	LD	BRCA	TCGA-BH-A18R-01A	IQGAP3	chr1	156526325	-	SH2D2A	chr1	156779599	-
Frame-shit	ENST00000294304	ENST00000312515		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
Frame-shit	ENST00000294304	ENST00000376991		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
5CDS-intron	ENST00000294304	ENST00000527119		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
5CDS-5UTR	ENST00000294304	ENST00000532933		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
intron-3CDS	ENST00000529481	ENST00000312515		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
intron-3CDS	ENST00000529481	ENST00000376991		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
intron-intron	ENST00000529481	ENST00000527119		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
intron-5UTR	ENST00000529481	ENST00000532933		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LRP5	chr11	68133168	+	DRAP1	chr11	65687253	+
Frame-shit	ENST00000505658	ENST00000269127		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LUC7L3	chr17	48814387	+	C17orf64	chr17	58506723	+
Frame-shit	ENST00000393227	ENST00000269127		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LUC7L3	chr17	48814387	+	C17orf64	chr17	58506723	+
Frame-shit	ENST00000311571	ENST00000269127		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LUC7L3	chr17	48814387	+	C17orf64	chr17	58506723	+
Frame-shit	ENST00000240304	ENST00000269127		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LUC7L3	chr17	48814387	+	C17orf64	chr17	58506723	+
intron-3CDS	ENST00000544170	ENST00000269127		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LUC7L3	chr17	48814387	+	C17orf64	chr17	58506723	+
intron-3CDS	ENST00000503798	ENST00000269127		TCGA	LD	BRCA	TCGA-BH-A18R-01A	LUC7L3	chr17	48814387	+	C17orf64	chr17	58506723	+
In-frame	ENST00000356175	ENST00000536708		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
In-frame	ENST00000356175	ENST00000338399		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
5CDS-3UTR	ENST00000356175	ENST00000578663		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
In-frame	ENST00000358273	ENST00000536708		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
In-frame	ENST00000358273	ENST00000338399		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
5CDS-3UTR	ENST00000358273	ENST00000578663		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000431387	ENST00000536708		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000431387	ENST00000338399		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3UTR	ENST00000431387	ENST00000578663		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000581113	ENST00000536708		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000581113	ENST00000338399		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3UTR	ENST00000581113	ENST00000578663		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000417592	ENST00000536708		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000417592	ENST00000338399		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3UTR	ENST00000417592	ENST00000578663		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000444181	ENST00000536708		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3CDS	ENST00000444181	ENST00000338399		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
intron-3UTR	ENST00000444181	ENST00000578663		TCGA	LD	BRCA	TCGA-BH-A18R-01A	NF1	chr17	29592357	+	CDK5RAP3	chr17	46058529	+
5CDS-5UTR	ENST00000262764	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000262764	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000262764	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000262764	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000262764	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5CDS-intron	ENST00000262764	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5UTR-5UTR	ENST00000329897	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5UTR-5UTR	ENST00000329897	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5UTR-5UTR	ENST00000329897	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5UTR-5UTR	ENST00000329897	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5UTR-5UTR	ENST00000329897	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5UTR-intron	ENST00000329897	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
intron-5UTR	ENST00000588281	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
intron-5UTR	ENST00000588281	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
intron-5UTR	ENST00000588281	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
intron-5UTR	ENST00000588281	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
intron-5UTR	ENST00000588281	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
intron-intron	ENST00000588281	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PGS1	chr17	76374889	+	KIF22	chr16	29808214	+
5CDS-3UTR	ENST00000305921	ENST00000227507		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PPM1D	chr17	58725443	+	CCND1	chr11	69466942	+
5CDS-intron	ENST00000305921	ENST00000536559		TCGA	LD	BRCA	TCGA-BH-A18R-01A	PPM1D	chr17	58725443	+	CCND1	chr11	69466942	+
5CDS-intron	ENST00000525071	ENST00000422819		TCGA	LD	BRCA	TCGA-BH-A18R-01A	SLC35F2	chr11	107729384	-	CCDC162P	chr6	109669630	+
5CDS-intron	ENST00000429869	ENST00000422819		TCGA	LD	BRCA	TCGA-BH-A18R-01A	SLC35F2	chr11	107729384	-	CCDC162P	chr6	109669630	+
5CDS-intron	ENST00000525815	ENST00000422819		TCGA	LD	BRCA	TCGA-BH-A18R-01A	SLC35F2	chr11	107729384	-	CCDC162P	chr6	109669630	+
5UTR-intron	ENST00000265836	ENST00000422819		TCGA	LD	BRCA	TCGA-BH-A18R-01A	SLC35F2	chr11	107729384	-	CCDC162P	chr6	109669630	+
intron-intron	ENST00000375682	ENST00000422819		TCGA	LD	BRCA	TCGA-BH-A18R-01A	SLC35F2	chr11	107729384	-	CCDC162P	chr6	109669630	+
3UTR-3CDS	ENST00000494757	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
3UTR-intron	ENST00000494757	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
3UTR-intron	ENST00000494757	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
3UTR-intron	ENST00000494757	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000323571	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000323571	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000323571	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000323571	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000585043	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000585043	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000585043	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000585043	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000394103	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000394103	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000394103	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000394103	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000536600	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000536600	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000536600	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
5UTR-intron	ENST00000536600	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
intron-3CDS	ENST00000583130	ENST00000300896		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
intron-intron	ENST00000583130	ENST00000592339		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
intron-intron	ENST00000583130	ENST00000393003		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
intron-intron	ENST00000583130	ENST00000586881		TCGA	LD	BRCA	TCGA-BH-A18R-01A	WIPF2	chr17	38375744	+	USP32	chr17	58422969	-
intron-3CDS	ENST00000581865	ENST00000356341		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000581865	ENST00000530617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000581865	ENST00000278568		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000581865	ENST00000528203		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-5UTR	ENST00000581865	ENST00000525542		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
3UTR-3CDS	ENST00000312655	ENST00000356341		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
3UTR-3CDS	ENST00000312655	ENST00000530617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
3UTR-3CDS	ENST00000312655	ENST00000278568		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
3UTR-3CDS	ENST00000312655	ENST00000528203		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
3UTR-5UTR	ENST00000312655	ENST00000525542		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000585166	ENST00000356341		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000585166	ENST00000530617		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000585166	ENST00000278568		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-3CDS	ENST00000585166	ENST00000528203		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
intron-5UTR	ENST00000585166	ENST00000525542		TCGA	LD	BRCA	TCGA-BH-A18R-01A	YPEL2	chr17	57474849	+	PAK1	chr11	77047327	-
Frame-shit	ENST00000216254	ENST00000406644		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACO2	chr22	41865186	+	TEF	chr22	41783355	+
Frame-shit	ENST00000216254	ENST00000266304		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACO2	chr22	41865186	+	TEF	chr22	41783355	+
Frame-shit	ENST00000396512	ENST00000406644		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACO2	chr22	41865186	+	TEF	chr22	41783355	+
Frame-shit	ENST00000396512	ENST00000266304		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACO2	chr22	41865186	+	TEF	chr22	41783355	+
intron-3CDS	ENST00000466237	ENST00000406644		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACO2	chr22	41865186	+	TEF	chr22	41783355	+
intron-3CDS	ENST00000466237	ENST00000266304		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACO2	chr22	41865186	+	TEF	chr22	41783355	+
intron-3CDS	ENST00000464611	ENST00000425013		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACTB	chr7	5570155	-	RNF216	chr7	5756397	-
intron-3CDS	ENST00000464611	ENST00000389902		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACTB	chr7	5570155	-	RNF216	chr7	5756397	-
intron-intron	ENST00000464611	ENST00000469375		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACTB	chr7	5570155	-	RNF216	chr7	5756397	-
5UTR-3CDS	ENST00000331789	ENST00000425013		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACTB	chr7	5570155	-	RNF216	chr7	5756397	-
5UTR-3CDS	ENST00000331789	ENST00000389902		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACTB	chr7	5570155	-	RNF216	chr7	5756397	-
5UTR-intron	ENST00000331789	ENST00000469375		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ACTB	chr7	5570155	-	RNF216	chr7	5756397	-
5CDS-5UTR	ENST00000368194	ENST00000368192		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368194	ENST00000326786		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368194	ENST00000460850		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000487682	ENST00000368192		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000487682	ENST00000326786		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000487682	ENST00000460850		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000361409	ENST00000368192		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000361409	ENST00000326786		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000361409	ENST00000460850		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000315174	ENST00000368192		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000315174	ENST00000326786		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000315174	ENST00000460850		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157106157	-
In-frame	ENST00000346672	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000346672	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000346672	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000346672	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000346672	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
In-frame	ENST00000360962	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000360962	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000360962	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000360962	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000360962	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-3CDS	ENST00000527634	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-intron	ENST00000527634	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-intron	ENST00000527634	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-3UTR	ENST00000527634	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-3UTR	ENST00000527634	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
In-frame	ENST00000540737	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000540737	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000540737	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000540737	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000540737	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-3CDS	ENST00000532565	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-intron	ENST00000532565	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-intron	ENST00000532565	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-3UTR	ENST00000532565	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5UTR-3UTR	ENST00000532565	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
In-frame	ENST00000525449	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000525449	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-intron	ENST00000525449	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000525449	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
5CDS-3UTR	ENST00000525449	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
3UTR-3CDS	ENST00000527368	ENST00000318312		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
3UTR-intron	ENST00000527368	ENST00000537537		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
3UTR-intron	ENST00000527368	ENST00000455748		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
3UTR-3UTR	ENST00000527368	ENST00000529766		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
3UTR-3UTR	ENST00000527368	ENST00000393994		TCGA	LD	BRCA	TCGA-BH-A18T-01A	C11orf80	chr11	66526567	+	BBS1	chr11	66294120	+
In-frame	ENST00000392259	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392259	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392259	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392259	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000392259	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392266	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392266	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392266	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392266	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000392266	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264274	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264274	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264274	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264274	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000264274	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000432109	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000432109	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000432109	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000432109	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000432109	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264275	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264275	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264275	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000264275	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000264275	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392258	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392258	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392258	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000392258	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000392258	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
intron-3CDS	ENST00000490682	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
intron-3CDS	ENST00000490682	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
intron-3CDS	ENST00000490682	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
intron-3CDS	ENST00000490682	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
intron-intron	ENST00000490682	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000358485	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000358485	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000358485	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000358485	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000358485	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000323492	ENST00000286190		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000323492	ENST00000405148		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000323492	ENST00000392257		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
In-frame	ENST00000323492	ENST00000439709		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
5CDS-intron	ENST00000323492	ENST00000448967		TCGA	LD	BRCA	TCGA-BH-A18T-01A	CASP8	chr2	202131514	+	ALS2CR12	chr2	202195556	-
Frame-shit	ENST00000496972	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000496972	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000405222	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000405222	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000407661	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000407661	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000406818	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000406818	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000407038	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000407038	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000404103	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000404103	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000407186	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000407186	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000288642	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000288642	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000545439	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000545439	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
intron-3CDS	ENST00000472690	ENST00000302188		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
intron-3CDS	ENST00000472690	ENST00000444339		TCGA	LD	BRCA	TCGA-BH-A18T-01A	DTNB	chr2	25799707	-	RBKS	chr2	28081438	-
Frame-shit	ENST00000375135	ENST00000375006		TCGA	LD	BRCA	TCGA-BH-A18T-01A	FGD1	chrX	54521559	-	PFKFB1	chrX	54989815	-
5CDS-intron	ENST00000375135	ENST00000545676		TCGA	LD	BRCA	TCGA-BH-A18T-01A	FGD1	chrX	54521559	-	PFKFB1	chrX	54989815	-
5CDS-intron	ENST00000375135	ENST00000374992		TCGA	LD	BRCA	TCGA-BH-A18T-01A	FGD1	chrX	54521559	-	PFKFB1	chrX	54989815	-
5CDS-intron	ENST00000081029	ENST00000545334		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000081029	ENST00000537927		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000081029	ENST00000318304		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000081029	ENST00000535047		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000081029	ENST00000542629		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000081029	ENST00000228425		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000081029	ENST00000541633		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000545334		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000537927		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000318304		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000535047		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000542629		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000228425		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
5CDS-intron	ENST00000538315	ENST00000541633		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MRPS35	chr12	27877119	+	PPFIBP1	chr12	27829361	+
In-frame	ENST00000285039	ENST00000442713		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
In-frame	ENST00000285039	ENST00000269445		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000285039	ENST00000584977		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000285039	ENST00000578396		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-3CDS	ENST00000324581	ENST00000442713		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-3CDS	ENST00000324581	ENST00000269445		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-intron	ENST00000324581	ENST00000584977		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-intron	ENST00000324581	ENST00000578396		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-3CDS	ENST00000592688	ENST00000442713		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-3CDS	ENST00000592688	ENST00000269445		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-intron	ENST00000592688	ENST00000584977		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-intron	ENST00000592688	ENST00000578396		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-3CDS	ENST00000587895	ENST00000442713		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-3CDS	ENST00000587895	ENST00000269445		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-intron	ENST00000587895	ENST00000584977		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
intron-intron	ENST00000587895	ENST00000578396		TCGA	LD	BRCA	TCGA-BH-A18T-01A	MYO5B	chr18	47721137	-	DYM	chr18	46645296	-
Frame-shit	ENST00000329654	ENST00000370986		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-intron	ENST00000329654	ENST00000370985		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-3UTR	ENST00000329654	ENST00000460575		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
Frame-shit	ENST00000371049	ENST00000370986		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-intron	ENST00000371049	ENST00000370985		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-3UTR	ENST00000371049	ENST00000460575		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
Frame-shit	ENST00000423207	ENST00000370986		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-intron	ENST00000423207	ENST00000370985		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-3UTR	ENST00000423207	ENST00000460575		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
intron-3CDS	ENST00000371048	ENST00000370986		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
intron-intron	ENST00000371048	ENST00000370985		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
intron-3UTR	ENST00000371048	ENST00000460575		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
Frame-shit	ENST00000371045	ENST00000370986		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-intron	ENST00000371045	ENST00000370985		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-3UTR	ENST00000371045	ENST00000460575		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
Frame-shit	ENST00000480109	ENST00000370986		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-intron	ENST00000480109	ENST00000370985		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-3UTR	ENST00000480109	ENST00000460575		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PDE4B	chr1	66834652	+	GADD45A	chr1	68151708	+
5CDS-3UTR	ENST00000331373	ENST00000519049		TCGA	LD	BRCA	TCGA-BH-A18T-01A	POMK	chr8	42958973	+	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000331373	ENST00000523211		TCGA	LD	BRCA	TCGA-BH-A18T-01A	POMK	chr8	42958973	+	NKAIN3	chr8	63492098	+
5CDS-3UTR	ENST00000331373	ENST00000328472		TCGA	LD	BRCA	TCGA-BH-A18T-01A	POMK	chr8	42958973	+	NKAIN3	chr8	63492098	+
intron-5UTR	ENST00000408388	ENST00000465342		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PVT1	chr8	128806980	+	POU5F1B	chr8	128427133	+
intron-intron	ENST00000408388	ENST00000391675		TCGA	LD	BRCA	TCGA-BH-A18T-01A	PVT1	chr8	128806980	+	POU5F1B	chr8	128427133	+
5CDS-5UTR	ENST00000514116	ENST00000340333		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ROPN1B	chr3	125696008	+	ALG1L	chr3	125652539	-
5CDS-5UTR	ENST00000251776	ENST00000340333		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ROPN1B	chr3	125696008	+	ALG1L	chr3	125652539	-
5CDS-5UTR	ENST00000505382	ENST00000340333		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ROPN1B	chr3	125696008	+	ALG1L	chr3	125652539	-
5CDS-5UTR	ENST00000511082	ENST00000340333		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ROPN1B	chr3	125696008	+	ALG1L	chr3	125652539	-
intron-5UTR	ENST00000504401	ENST00000340333		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ROPN1B	chr3	125696008	+	ALG1L	chr3	125652539	-
intron-5UTR	ENST00000511862	ENST00000340333		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ROPN1B	chr3	125696008	+	ALG1L	chr3	125652539	-
In-frame	ENST00000176763	ENST00000519643		TCGA	LD	BRCA	TCGA-BH-A18T-01A	STK10	chr5	171583628	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000176763	ENST00000311601		TCGA	LD	BRCA	TCGA-BH-A18T-01A	STK10	chr5	171583628	-	SH3PXD2B	chr5	171849500	-
5CDS-intron	ENST00000176763	ENST00000523651		TCGA	LD	BRCA	TCGA-BH-A18T-01A	STK10	chr5	171583628	-	SH3PXD2B	chr5	171849500	-
intron-3CDS	ENST00000517775	ENST00000519643		TCGA	LD	BRCA	TCGA-BH-A18T-01A	STK10	chr5	171583628	-	SH3PXD2B	chr5	171849500	-
intron-3CDS	ENST00000517775	ENST00000311601		TCGA	LD	BRCA	TCGA-BH-A18T-01A	STK10	chr5	171583628	-	SH3PXD2B	chr5	171849500	-
intron-intron	ENST00000517775	ENST00000523651		TCGA	LD	BRCA	TCGA-BH-A18T-01A	STK10	chr5	171583628	-	SH3PXD2B	chr5	171849500	-
intron-3CDS	ENST00000347370	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-intron	ENST00000347370	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
Frame-shit	ENST00000349431	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
5CDS-intron	ENST00000349431	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-3CDS	ENST00000339385	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-intron	ENST00000339385	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
5UTR-3CDS	ENST00000348298	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
5UTR-intron	ENST00000348298	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-3CDS	ENST00000400929	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-intron	ENST00000400929	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
Frame-shit	ENST00000360466	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
5CDS-intron	ENST00000360466	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
Frame-shit	ENST00000400930	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
5CDS-intron	ENST00000400930	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-3CDS	ENST00000491779	ENST00000378609		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
intron-intron	ENST00000491779	ENST00000472614		TCGA	LD	BRCA	TCGA-BH-A18T-01A	UBE2J2	chr1	1203242	-	GNB1	chr1	1736020	-
In-frame	ENST00000535572	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000535572	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000535572	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000537687	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000537687	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000537687	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000315939	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000315939	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000315939	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000447667	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000447667	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3UTR	ENST00000447667	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000530271	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000530271	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000530271	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000540360	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000540360	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3UTR	ENST00000540360	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000340908	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
In-frame	ENST00000340908	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000340908	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000574564	ENST00000452611		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000574564	ENST00000382622		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3UTR	ENST00000574564	ENST00000261252		TCGA	LD	BRCA	TCGA-BH-A18T-01A	WNK1	chr12	971436	+	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000607252	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ZNF318	chr6	43310414	-	PDE3A	chr12	20709594	+
intron-intron	ENST00000607252	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ZNF318	chr6	43310414	-	PDE3A	chr12	20709594	+
In-frame	ENST00000318149	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ZNF318	chr6	43310414	-	PDE3A	chr12	20709594	+
5CDS-intron	ENST00000318149	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ZNF318	chr6	43310414	-	PDE3A	chr12	20709594	+
In-frame	ENST00000361428	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ZNF318	chr6	43310414	-	PDE3A	chr12	20709594	+
5CDS-intron	ENST00000361428	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A18T-01A	ZNF318	chr6	43310414	-	PDE3A	chr12	20709594	+
5UTR-3CDS	ENST00000258761	ENST00000513761		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000258761	ENST00000347613		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000258761	ENST00000360642		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000258761	ENST00000504131		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-intron	ENST00000258761	ENST00000506924		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000433922	ENST00000513761		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000433922	ENST00000347613		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000433922	ENST00000360642		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000433922	ENST00000504131		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-intron	ENST00000433922	ENST00000506924		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
3UTR-3CDS	ENST00000432311	ENST00000513761		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
3UTR-3CDS	ENST00000432311	ENST00000347613		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
3UTR-3CDS	ENST00000432311	ENST00000360642		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
3UTR-3CDS	ENST00000432311	ENST00000504131		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
3UTR-intron	ENST00000432311	ENST00000506924		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000452975	ENST00000513761		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000452975	ENST00000347613		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000452975	ENST00000360642		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000452975	ENST00000504131		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-intron	ENST00000452975	ENST00000506924		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000405202	ENST00000513761		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000405202	ENST00000347613		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000405202	ENST00000360642		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-3CDS	ENST00000405202	ENST00000504131		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5UTR-intron	ENST00000405202	ENST00000506924		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
intron-3CDS	ENST00000407633	ENST00000513761		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
intron-3CDS	ENST00000407633	ENST00000347613		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
intron-3CDS	ENST00000407633	ENST00000360642		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
intron-3CDS	ENST00000407633	ENST00000504131		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
intron-intron	ENST00000407633	ENST00000506924		TCGA	LD	BRCA	TCGA-BH-A18U-01A	BZW2	chr7	16685913	+	CLCN3	chr4	170601201	+
5CDS-intron	ENST00000458420	ENST00000273654		TCGA	LD	BRCA	TCGA-BH-A18U-01A	CLSTN2	chr3	139654325	+	CCDC39	chr3	180565412	-
5CDS-intron	ENST00000458420	ENST00000442201		TCGA	LD	BRCA	TCGA-BH-A18U-01A	CLSTN2	chr3	139654325	+	CCDC39	chr3	180565412	-
5CDS-5UTR	ENST00000458420	ENST00000485055		TCGA	LD	BRCA	TCGA-BH-A18U-01A	CLSTN2	chr3	139654325	+	CCDC39	chr3	180565412	-
5UTR-3CDS	ENST00000159111	ENST00000301281		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
5UTR-3CDS	ENST00000159111	ENST00000394765		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
5UTR-3CDS	ENST00000381759	ENST00000301281		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
5UTR-3CDS	ENST00000381759	ENST00000394765		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
intron-3CDS	ENST00000536461	ENST00000301281		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
intron-3CDS	ENST00000536461	ENST00000394765		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
intron-3CDS	ENST00000592175	ENST00000301281		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
intron-3CDS	ENST00000592175	ENST00000394765		TCGA	LD	BRCA	TCGA-BH-A18U-01A	KDM4B	chr19	4969241	+	UBXN6	chr19	4447622	-
Frame-shit	ENST00000264230	ENST00000248701		TCGA	LD	BRCA	TCGA-BH-A18U-01A	NOA1	chr4	57839314	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000264230	ENST00000506738		TCGA	LD	BRCA	TCGA-BH-A18U-01A	NOA1	chr4	57839314	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000264230	ENST00000504762		TCGA	LD	BRCA	TCGA-BH-A18U-01A	NOA1	chr4	57839314	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000381638	ENST00000399273		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
Frame-shit	ENST00000381638	ENST00000443444		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
Frame-shit	ENST00000381638	ENST00000456009		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
Frame-shit	ENST00000381638	ENST00000360524		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
Frame-shit	ENST00000381638	ENST00000340621		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
5CDS-3UTR	ENST00000381638	ENST00000436374		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3CDS	ENST00000574474	ENST00000399273		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3CDS	ENST00000574474	ENST00000443444		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3CDS	ENST00000574474	ENST00000456009		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3CDS	ENST00000574474	ENST00000360524		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3CDS	ENST00000574474	ENST00000340621		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3UTR	ENST00000574474	ENST00000436374		TCGA	LD	BRCA	TCGA-BH-A18U-01A	ZZEF1	chr17	3928213	-	CCDC144A	chr17	16610783	+
intron-3CDS	ENST00000272928	ENST00000299957		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
intron-3UTR	ENST00000272928	ENST00000360824		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
intron-3UTR	ENST00000272928	ENST00000345795		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
intron-intron	ENST00000272928	ENST00000429162		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ACKR3	chr2	237476484	+	CASC4	chr15	44671888	+
In-frame	ENST00000264613	ENST00000546136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000381381		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000309359		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000451604		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000537393		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
In-frame	ENST00000264613	ENST00000541536		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000396007		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000545921		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000541847		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000441133		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
5CDS-intron	ENST00000264613	ENST00000536850		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000546136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000381381		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000309359		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000451604		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000537393		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-3CDS	ENST00000462336	ENST00000541536		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000396007		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000545921		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000541847		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000441133		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
intron-intron	ENST00000462336	ENST00000536850		TCGA	LD	BRCA	TCGA-BH-A18V-01A	CP	chr3	148939434	-	SOX5	chr12	23999127	-
Frame-shit	ENST00000367922	ENST00000262995		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
Frame-shit	ENST00000367922	ENST00000262994		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000367922	ENST00000505913		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
5CDS-intron	ENST00000367922	ENST00000515388		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
Frame-shit	ENST00000367921	ENST00000262995		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
Frame-shit	ENST00000367921	ENST00000262994		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000367921	ENST00000505913		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
5CDS-intron	ENST00000367921	ENST00000515388		TCGA	LD	BRCA	TCGA-BH-A18V-01A	DDR2	chr1	162688935	+	GAB1	chr4	144336630	+
3UTR-3CDS	ENST00000423620	ENST00000523731		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000423620	ENST00000447247		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-intron	ENST00000423620	ENST00000520845		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000433389	ENST00000523731		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000433389	ENST00000447247		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-intron	ENST00000433389	ENST00000520845		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000358397	ENST00000523731		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000358397	ENST00000447247		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-intron	ENST00000358397	ENST00000520845		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000454170	ENST00000523731		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000454170	ENST00000447247		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-intron	ENST00000454170	ENST00000520845		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000523347	ENST00000523731		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-3CDS	ENST00000523347	ENST00000447247		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
3UTR-intron	ENST00000523347	ENST00000520845		TCGA	LD	BRCA	TCGA-BH-A18V-01A	ESRP1	chr8	95718262	+	INTS8	chr8	95862169	+
In-frame	ENST00000357402	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000357402	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000357402	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-intron	ENST00000357402	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-3CDS	ENST00000452209	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-3CDS	ENST00000452209	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-5UTR	ENST00000452209	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
3UTR-intron	ENST00000452209	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000395353	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
In-frame	ENST00000395353	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-5UTR	ENST00000395353	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
5CDS-intron	ENST00000395353	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000566554	ENST00000561482		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000566554	ENST00000160827		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000400750		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000400751		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-5UTR	ENST00000566554	ENST00000569382		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-intron	ENST00000566554	ENST00000563263		TCGA	LD	BRCA	TCGA-BH-A18V-01A	MVP	chr16	29851780	+	KIF22	chr16	29814770	+
intron-3CDS	ENST00000355117	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000355117	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000355117	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000355117	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000355117	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3UTR	ENST00000355117	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3CDS	ENST00000540841	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540841	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540841	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540841	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540841	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3UTR	ENST00000540841	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3CDS	ENST00000540178	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540178	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540178	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540178	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000540178	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3UTR	ENST00000540178	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
In-frame	ENST00000360409	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000360409	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3CDS	ENST00000417189	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000417189	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000417189	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000417189	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000417189	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
intron-3UTR	ENST00000417189	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
In-frame	ENST00000357118	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000357118	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
In-frame	ENST00000357785	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000357785	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
In-frame	ENST00000272849	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000272849	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
In-frame	ENST00000412873	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000412873	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
3UTR-3CDS	ENST00000485684	ENST00000406610		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
3UTR-intron	ENST00000485684	ENST00000462231		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
3UTR-intron	ENST00000485684	ENST00000349953		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
3UTR-intron	ENST00000485684	ENST00000358768		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
3UTR-intron	ENST00000485684	ENST00000351153		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
3UTR-3UTR	ENST00000485684	ENST00000488622		TCGA	LD	BRCA	TCGA-BH-A18V-01A	NRP2	chr2	206631527	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000319622	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000319622	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000319622	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000565184	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000565184	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000565184	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000389093	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000389093	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000389093	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000335181	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000335181	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000335181	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
intron-3CDS	ENST00000568883	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
intron-3CDS	ENST00000568883	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
intron-3CDS	ENST00000568883	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
In-frame	ENST00000449901	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
In-frame	ENST00000449901	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
In-frame	ENST00000449901	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000565154	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000565154	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000565154	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000568459	ENST00000301365		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000568459	ENST00000576742		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
Frame-shit	ENST00000568459	ENST00000572519		TCGA	LD	BRCA	TCGA-BH-A18V-01A	PKM	chr15	72502014	-	TRPV3	chr17	3439007	-
intron-5UTR	ENST00000344691	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000344691	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000344691	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000344691	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000344691	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000344691	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000325074	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000325074	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000325074	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000325074	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000325074	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000325074	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000437180	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000437180	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000437180	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000437180	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000437180	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000437180	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000300305	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000300305	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000300305	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000300305	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000300305	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000300305	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000399240	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000399240	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000399240	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000399240	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000399240	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000399240	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000486278	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000486278	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000486278	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000486278	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000486278	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000486278	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000494829	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000494829	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000494829	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000494829	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000494829	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000494829	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000358356	ENST00000399136		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000358356	ENST00000342108		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000358356	ENST00000399139		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000358356	ENST00000399137		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000358356	ENST00000399135		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
intron-intron	ENST00000358356	ENST00000478313		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX1	chr21	36952958	-	CLDN14	chr21	37834074	-
5CDS-3UTR	ENST00000541979	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000541979	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000541979	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000541979	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000541979	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000465038	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000465038	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000352853	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000352853	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371438	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000371438	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371436	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000371436	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000576263	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000576263	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000371432	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000371432	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-3UTR	ENST00000359524	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
5CDS-intron	ENST00000359524	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000382778		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000351808		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000319980		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-3UTR	ENST00000483243	ENST00000537103		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
intron-intron	ENST00000483243	ENST00000461115		TCGA	LD	BRCA	TCGA-BH-A18V-01A	RUNX2	chr6	45459851	+	IFT88	chr13	21264844	+
In-frame	ENST00000234677	ENST00000369939		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000234677	ENST00000529753		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000234677	ENST00000369938		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000369923	ENST00000369939		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000369923	ENST00000529753		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000369923	ENST00000369938		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000468588	ENST00000369939		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000468588	ENST00000529753		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
intron-intron	ENST00000468588	ENST00000369938		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SARS	chr1	109766670	+	KIAA1324	chr1	109704516	+
In-frame	ENST00000343017	ENST00000268130		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
In-frame	ENST00000343017	ENST00000560294		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
5CDS-intron	ENST00000343017	ENST00000558000		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
5CDS-intron	ENST00000343017	ENST00000444934		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
Frame-shit	ENST00000326277	ENST00000268130		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
Frame-shit	ENST00000326277	ENST00000560294		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
5CDS-intron	ENST00000326277	ENST00000558000		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
5CDS-intron	ENST00000326277	ENST00000444934		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
In-frame	ENST00000381410	ENST00000268130		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
In-frame	ENST00000381410	ENST00000560294		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
5CDS-intron	ENST00000381410	ENST00000558000		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
5CDS-intron	ENST00000381410	ENST00000444934		TCGA	LD	BRCA	TCGA-BH-A18V-01A	SNX18	chr5	53815403	+	WDR93	chr15	90270388	+
In-frame	ENST00000532485	ENST00000393958		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
In-frame	ENST00000532485	ENST00000393960		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000532485	ENST00000355677		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000532485	ENST00000524491		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000532485	ENST00000529047		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000532485	ENST00000393955		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000532485	ENST00000528224		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-3CDS	ENST00000530182	ENST00000393958		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-3CDS	ENST00000530182	ENST00000393960		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-intron	ENST00000530182	ENST00000355677		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-intron	ENST00000530182	ENST00000524491		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-intron	ENST00000530182	ENST00000529047		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-intron	ENST00000530182	ENST00000393955		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
3UTR-intron	ENST00000530182	ENST00000528224		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-3CDS	ENST00000526597	ENST00000393958		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-3CDS	ENST00000526597	ENST00000393960		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000526597	ENST00000355677		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000526597	ENST00000524491		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000526597	ENST00000529047		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000526597	ENST00000393955		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000526597	ENST00000528224		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
In-frame	ENST00000533873	ENST00000393958		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
In-frame	ENST00000533873	ENST00000393960		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000533873	ENST00000355677		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000533873	ENST00000524491		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000533873	ENST00000529047		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000533873	ENST00000393955		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000533873	ENST00000528224		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
In-frame	ENST00000538157	ENST00000393958		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
In-frame	ENST00000538157	ENST00000393960		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000538157	ENST00000355677		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000538157	ENST00000524491		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000538157	ENST00000529047		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000538157	ENST00000393955		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
5CDS-intron	ENST00000538157	ENST00000528224		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-3CDS	ENST00000544113	ENST00000393958		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-3CDS	ENST00000544113	ENST00000393960		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000544113	ENST00000355677		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000544113	ENST00000524491		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000544113	ENST00000529047		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000544113	ENST00000393955		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
intron-intron	ENST00000544113	ENST00000528224		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	ACER3	chr11	76670075	+	PC	chr11	66620854	-
Frame-shit	ENST00000537875	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000537875	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
5CDS-3UTR	ENST00000537875	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000309791	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000309791	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
5CDS-3UTR	ENST00000309791	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000297848	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000297848	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
5CDS-3UTR	ENST00000297848	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000247781	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
Frame-shit	ENST00000247781	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
5CDS-3UTR	ENST00000247781	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
3UTR-3CDS	ENST00000432943	ENST00000521746		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
3UTR-3CDS	ENST00000432943	ENST00000420274		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
3UTR-3UTR	ENST00000432943	ENST00000388745		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	COL14A1	chr8	121220600	+	PLEKHA2	chr8	38808368	+
intron-3CDS	ENST00000340149	ENST00000299626		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
intron-3CDS	ENST00000340149	ENST00000376156		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
intron-intron	ENST00000340149	ENST00000532552		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
Frame-shit	ENST00000361507	ENST00000299626		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
In-frame	ENST00000361507	ENST00000376156		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
5CDS-intron	ENST00000361507	ENST00000532552		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
5UTR-3CDS	ENST00000526030	ENST00000299626		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
5UTR-3CDS	ENST00000526030	ENST00000376156		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
5UTR-intron	ENST00000526030	ENST00000532552		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GAB2	chr11	78128692	-	ALG8	chr11	77838482	-
In-frame	ENST00000309156	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000309156	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
3UTR-3CDS	ENST00000309185	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
3UTR-3CDS	ENST00000309185	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000394211	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000394211	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
intron-3CDS	ENST00000578702	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
intron-3CDS	ENST00000578702	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000445327	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000445327	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000394209	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
In-frame	ENST00000394209	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
3UTR-3CDS	ENST00000394204	ENST00000502692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
3UTR-3CDS	ENST00000394204	ENST00000513398		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	GRB7	chr17	37902455	+	ACTN3	chr11	66318710	+
5UTR-3CDS	ENST00000340067	ENST00000278550		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	KCTD21	chr11	77899619	-	TENM4	chr11	78776052	-
5UTR-intron	ENST00000340067	ENST00000533038		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	KCTD21	chr11	77899619	-	TENM4	chr11	78776052	-
5UTR-3CDS	ENST00000399302	ENST00000241051		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	QSER1	chr11	32914880	+	DEPDC7	chr11	33047205	+
5UTR-3CDS	ENST00000399302	ENST00000311388		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	QSER1	chr11	32914880	+	DEPDC7	chr11	33047205	+
3UTR-3CDS	ENST00000527250	ENST00000241051		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	QSER1	chr11	32914880	+	DEPDC7	chr11	33047205	+
3UTR-3CDS	ENST00000527250	ENST00000311388		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	QSER1	chr11	32914880	+	DEPDC7	chr11	33047205	+
intron-3CDS	ENST00000527788	ENST00000241051		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	QSER1	chr11	32914880	+	DEPDC7	chr11	33047205	+
intron-3CDS	ENST00000527788	ENST00000311388		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	QSER1	chr11	32914880	+	DEPDC7	chr11	33047205	+
5CDS-intron	ENST00000278550	ENST00000514361		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000503028		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000310092		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000396053		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000408993		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000578778		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000483858		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000398692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000506523		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000530235		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000532968		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000409406		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
5CDS-intron	ENST00000278550	ENST00000515838		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000514361		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000503028		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000310092		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000396053		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000408993		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000578778		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000483858		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000398692		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000506523		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000530235		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000532968		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000409406		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
intron-intron	ENST00000533038	ENST00000515838		TCGA	LD	BRCA	TCGA-BH-A1EN-01A	TENM4	chr11	78775783	-	RBM4	chr11	66433327	+
In-frame	ENST00000366542	ENST00000370689		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366542	ENST00000370685		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366542	ENST00000394838		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366542	ENST00000370682		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366542	ENST00000394839		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366542	ENST00000370688		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000366542	ENST00000470673		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000366542	ENST00000370680		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366543	ENST00000370689		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366543	ENST00000370685		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366543	ENST00000394838		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366543	ENST00000370682		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366543	ENST00000394839		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366543	ENST00000370688		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000366543	ENST00000470673		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000366543	ENST00000370680		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366544	ENST00000370689		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366544	ENST00000370685		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366544	ENST00000394838		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366544	ENST00000370682		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366544	ENST00000394839		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
In-frame	ENST00000366544	ENST00000370688		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000366544	ENST00000470673		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000366544	ENST00000370680		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000468254	ENST00000370689		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000468254	ENST00000370685		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000468254	ENST00000394838		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000468254	ENST00000370682		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000468254	ENST00000394839		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000468254	ENST00000370688		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000468254	ENST00000470673		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000468254	ENST00000370680		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000481987	ENST00000370689		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000481987	ENST00000370685		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000481987	ENST00000394838		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000481987	ENST00000370682		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000481987	ENST00000394839		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000481987	ENST00000370688		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000481987	ENST00000470673		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000481987	ENST00000370680		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000490813	ENST00000370689		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000490813	ENST00000370685		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000490813	ENST00000394838		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000490813	ENST00000370682		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000490813	ENST00000394839		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000490813	ENST00000370688		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000490813	ENST00000470673		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000490813	ENST00000370680		TCGA	LD	BRCA	TCGA-BH-A1EO-01A	CEP170	chr1	243362362	-	PRKACB	chr1	84644860	+
Frame-shit	ENST00000425967	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000425967	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000425967	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000425967	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000425967	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000425967	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000425967	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000425967	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397091	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000397091	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000447712	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000447712	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000341462	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000341462	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000532791	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000532791	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000397113	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000397113	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000356207	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000356207	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000335922	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5UTR-intron	ENST00000335922	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
In-frame	ENST00000326324	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000326324	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397103	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000397103	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000397108	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000397108	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000602723		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000400186		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000520002		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000602557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000537824		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000542608		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000496629	ENST00000539096		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
intron-intron	ENST00000496629	ENST00000523387		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	FGFR1	chr8	38314874	-	CSMD1	chr8	3889621	-
Frame-shit	ENST00000269033	ENST00000251241		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000269033	ENST00000451169		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000269033	ENST00000425628		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
Frame-shit	ENST00000540801	ENST00000251241		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000540801	ENST00000451169		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000540801	ENST00000425628		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
intron-3CDS	ENST00000324677	ENST00000251241		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
intron-5UTR	ENST00000324677	ENST00000451169		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
intron-5UTR	ENST00000324677	ENST00000425628		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
Frame-shit	ENST00000582084	ENST00000251241		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000582084	ENST00000451169		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000582084	ENST00000425628		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
Frame-shit	ENST00000590153	ENST00000251241		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000590153	ENST00000451169		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000590153	ENST00000425628		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
Frame-shit	ENST00000579954	ENST00000251241		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000579954	ENST00000451169		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000579954	ENST00000425628		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	SSH2	chr17	28256956	-	DHX40	chr17	57643988	+
Frame-shit	ENST00000588240	ENST00000393038		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
In-frame	ENST00000588240	ENST00000537860		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000588240	ENST00000409433		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000588240	ENST00000470557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000588240	ENST00000579915		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000592237	ENST00000393038		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
In-frame	ENST00000592237	ENST00000537860		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000592237	ENST00000409433		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000592237	ENST00000470557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000592237	ENST00000579915		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000311979	ENST00000393038		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
In-frame	ENST00000311979	ENST00000537860		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000311979	ENST00000409433		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000311979	ENST00000470557		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000311979	ENST00000579915		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	TAF15	chr17	34151202	+	PTRH2	chr17	57775339	-
5CDS-5UTR	ENST00000293218	ENST00000578892		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-intron	ENST00000293218	ENST00000578379		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000293218	ENST00000449662		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000293218	ENST00000579788		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000293218	ENST00000418105		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000293218	ENST00000412356		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000293218	ENST00000581417		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000293218	ENST00000579687		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000578892		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-intron	ENST00000589666	ENST00000578379		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000449662		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000579788		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000418105		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000412356		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000581417		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
5CDS-5UTR	ENST00000589666	ENST00000579687		TCGA	LD	BRCA	TCGA-BH-A1ES-01A	UNK	chr17	73781065	+	ICAM2	chr17	62084095	-
In-frame	ENST00000370192	ENST00000388887		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	DPYD	chr1	98348820	-	STAB2	chr12	104054109	+
intron-3CDS	ENST00000474241	ENST00000388887		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	DPYD	chr1	98348820	-	STAB2	chr12	104054109	+
intron-3CDS	ENST00000423006	ENST00000388887		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	DPYD	chr1	98348820	-	STAB2	chr12	104054109	+
In-frame	ENST00000306031	ENST00000388887		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	DPYD	chr1	98348820	-	STAB2	chr12	104054109	+
Frame-shit	ENST00000253861	ENST00000278616		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000253861	ENST00000452508		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
5CDS-intron	ENST00000253861	ENST00000525178		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000539845	ENST00000278616		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000539845	ENST00000452508		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
5CDS-intron	ENST00000539845	ENST00000525178		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-3CDS	ENST00000393161	ENST00000278616		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-3CDS	ENST00000393161	ENST00000452508		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-intron	ENST00000393161	ENST00000525178		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000545148	ENST00000278616		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000545148	ENST00000452508		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
5CDS-intron	ENST00000545148	ENST00000525178		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-3CDS	ENST00000460346	ENST00000278616		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-3CDS	ENST00000460346	ENST00000452508		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-intron	ENST00000460346	ENST00000525178		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000541309	ENST00000278616		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
Frame-shit	ENST00000541309	ENST00000452508		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
5CDS-intron	ENST00000541309	ENST00000525178		TCGA	LD	BRCA	TCGA-BH-A1EU-01A	EXOC4	chr7	133692588	+	ATM	chr11	108114680	+
intron-3CDS	ENST00000369066	ENST00000300134		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000369066	ENST00000538913		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000369066	ENST00000543873		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000369066	ENST00000556155		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000369066	ENST00000537215		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000369066	ENST00000454075		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000535438	ENST00000300134		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000535438	ENST00000538913		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000535438	ENST00000543873		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000535438	ENST00000556155		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000535438	ENST00000537215		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000535438	ENST00000454075		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000487681	ENST00000300134		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000487681	ENST00000538913		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000487681	ENST00000543873		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000487681	ENST00000556155		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000487681	ENST00000537215		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
intron-3CDS	ENST00000487681	ENST00000454075		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	AIM1	chr6	106808956	+	STAT6	chr12	57492685	-
Frame-shit	ENST00000431231	ENST00000407008		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000431231	ENST00000583517		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000431231	ENST00000582037		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
Frame-shit	ENST00000437668	ENST00000407008		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000437668	ENST00000583517		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000437668	ENST00000582037		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
intron-3CDS	ENST00000582409	ENST00000407008		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
intron-intron	ENST00000582409	ENST00000583517		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
intron-intron	ENST00000582409	ENST00000582037		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
Frame-shit	ENST00000443378	ENST00000407008		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000443378	ENST00000583517		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
5CDS-intron	ENST00000443378	ENST00000582037		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ARHGAP23	chr17	36638919	+	NLK	chr17	26490569	+
Frame-shit	ENST00000367816	ENST00000435803		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
5CDS-intron	ENST00000367816	ENST00000544596		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
Frame-shit	ENST00000367815	ENST00000435803		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
5CDS-intron	ENST00000367815	ENST00000544596		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
Frame-shit	ENST00000499679	ENST00000435803		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
5CDS-intron	ENST00000499679	ENST00000544596		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
Frame-shit	ENST00000367813	ENST00000435803		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
5CDS-intron	ENST00000367813	ENST00000544596		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ATP1B1	chr1	169080736	+	ABCA13	chr7	48258951	+
Frame-shit	ENST00000368069	ENST00000439660		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	COPA	chr1	160293221	-	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000368069	ENST00000578573		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	COPA	chr1	160293221	-	CISD3	chr17	36887013	+
Frame-shit	ENST00000241704	ENST00000439660		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	COPA	chr1	160293221	-	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000241704	ENST00000578573		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	COPA	chr1	160293221	-	CISD3	chr17	36887013	+
5CDS-intron	ENST00000584601	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000584601	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000584601	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000406381	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000406381	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000406381	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000541774	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000541774	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000541774	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000445658	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000445658	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000445658	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000540147	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000540147	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000540147	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000584450	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000584450	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000584450	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000269571	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000269571	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000269571	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000578199	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000578199	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000578199	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000540042	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000540042	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-5UTR	ENST00000540042	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
intron-intron	ENST00000584888	ENST00000264659		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
intron-intron	ENST00000584888	ENST00000578925		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
intron-5UTR	ENST00000584888	ENST00000398579		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ERBB2	chr17	37872192	+	SRCIN1	chr17	36699371	-
5CDS-intron	ENST00000266517	ENST00000545334		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000266517	ENST00000537927		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000266517	ENST00000318304		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000266517	ENST00000535047		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000266517	ENST00000542629		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000266517	ENST00000228425		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-intron	ENST00000266517	ENST00000541633		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-intron	ENST00000335148	ENST00000545334		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000335148	ENST00000537927		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000335148	ENST00000318304		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000335148	ENST00000535047		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000335148	ENST00000542629		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-5UTR	ENST00000335148	ENST00000228425		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
5CDS-intron	ENST00000335148	ENST00000541633		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ETNK1	chr12	22778520	+	PPFIBP1	chr12	27798995	+
In-frame	ENST00000299293	ENST00000378487		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
Frame-shit	ENST00000299293	ENST00000538965		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
In-frame	ENST00000549921	ENST00000378487		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
Frame-shit	ENST00000549921	ENST00000538965		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
In-frame	ENST00000550389	ENST00000378487		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
Frame-shit	ENST00000550389	ENST00000538965		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
In-frame	ENST00000397997	ENST00000378487		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
Frame-shit	ENST00000397997	ENST00000538965		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	FRS2	chr12	69962876	+	CLLU1OS	chr12	92816412	-
Frame-shit	ENST00000378609	ENST00000367765		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
Frame-shit	ENST00000378609	ENST00000367767		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
Frame-shit	ENST00000378609	ENST00000361580		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
Frame-shit	ENST00000378609	ENST00000538366		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
5CDS-5UTR	ENST00000378609	ENST00000540905		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
5CDS-intron	ENST00000378609	ENST00000490550		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
intron-3CDS	ENST00000472614	ENST00000367765		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
intron-3CDS	ENST00000472614	ENST00000367767		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
intron-3CDS	ENST00000472614	ENST00000361580		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
intron-3CDS	ENST00000472614	ENST00000538366		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
intron-5UTR	ENST00000472614	ENST00000540905		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
intron-intron	ENST00000472614	ENST00000490550		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	GNB1	chr1	1735858	-	KIFAP3	chr1	169993737	-
In-frame	ENST00000517913	ENST00000254066		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000517913	ENST00000394089		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000517913	ENST00000425707		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000517913	ENST00000394086		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000517913	ENST00000394081		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000517913	ENST00000420042		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000435422	ENST00000254066		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000435422	ENST00000394089		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435422	ENST00000425707		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435422	ENST00000394086		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435422	ENST00000394081		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435422	ENST00000420042		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000447401	ENST00000254066		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000447401	ENST00000394089		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000447401	ENST00000425707		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000447401	ENST00000394086		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000447401	ENST00000394081		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000447401	ENST00000420042		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000337851	ENST00000254066		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000337851	ENST00000394089		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000337851	ENST00000425707		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000337851	ENST00000394086		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000337851	ENST00000394081		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000337851	ENST00000420042		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SGCD	chr5	156022061	+	RARA	chr17	38504568	+
In-frame	ENST00000269033	ENST00000367463		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
5CDS-intron	ENST00000269033	ENST00000466695		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
In-frame	ENST00000540801	ENST00000367463		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
5CDS-intron	ENST00000540801	ENST00000466695		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
intron-3CDS	ENST00000324677	ENST00000367463		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
intron-intron	ENST00000324677	ENST00000466695		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
Frame-shit	ENST00000582084	ENST00000367463		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
5CDS-intron	ENST00000582084	ENST00000466695		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
In-frame	ENST00000590153	ENST00000367463		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
5CDS-intron	ENST00000590153	ENST00000466695		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
In-frame	ENST00000579954	ENST00000367463		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
5CDS-intron	ENST00000579954	ENST00000466695		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SSH2	chr17	28256956	-	UST	chr6	149262415	+
In-frame	ENST00000360743	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000360743	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000360743	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000360743	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000360743	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000360743	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000358039	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000358039	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000358039	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000358039	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000358039	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000358039	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000544629	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000544629	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000544629	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000544629	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000544629	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000544629	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-3CDS	ENST00000369669	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000369669	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000369669	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000369669	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000369669	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000369669	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000490067	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000490067	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000490067	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000490067	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000490067	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000490067	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000369668	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369668	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369668	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369668	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369668	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369668	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000369666	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369666	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369666	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369666	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369666	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000369666	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000343210	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000343210	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000343210	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000343210	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000343210	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000343210	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000538187	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000538187	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000538187	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000538187	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000538187	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000538187	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-3CDS	ENST00000463235	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000463235	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000463235	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000463235	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000463235	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5UTR-intron	ENST00000463235	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
In-frame	ENST00000543570	ENST00000373381		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000543570	ENST00000373380		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000543570	ENST00000373377		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000543570	ENST00000373388		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000543570	ENST00000489419		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
5CDS-intron	ENST00000543570	ENST00000338325		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	ST7L	chr1	113153463	-	CSMD2	chr1	34052768	-
Frame-shit	ENST00000367121	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
Frame-shit	ENST00000367121	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000367121	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000367121	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
Frame-shit	ENST00000367122	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
Frame-shit	ENST00000367122	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000367122	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000367122	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
Frame-shit	ENST00000355585	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
Frame-shit	ENST00000355585	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000355585	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000355585	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-3CDS	ENST00000449859	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-3CDS	ENST00000449859	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-5UTR	ENST00000449859	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-intron	ENST00000449859	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-3CDS	ENST00000367112	ENST00000431530		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-3CDS	ENST00000367112	ENST00000380808		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-5UTR	ENST00000367112	ENST00000542829		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
intron-intron	ENST00000367112	ENST00000400542		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	SYNJ2	chr6	158490705	+	MTUS2	chr13	30054287	+
5UTR-intron	ENST00000461783	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000461783	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000461783	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000449545	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000449545	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000449545	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000367174	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000367174	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000367174	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000456144	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000456144	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000456144	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000318981	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000318981	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000318981	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000360366	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000360366	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000360366	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000529824	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000529824	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000529824	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000456877	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000456877	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000456877	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000528391	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000528391	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000528391	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000275246	ENST00000430627		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000275246	ENST00000447079		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
intron-intron	ENST00000275246	ENST00000559545		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TIAM2	chr6	155265340	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000588659	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000588659	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000588659	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000588659	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000588659	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000588659	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000588659	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-5UTR	ENST00000588659	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000541594	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-5UTR	ENST00000541594	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000536052	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-5UTR	ENST00000536052	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-intron	ENST00000331615	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5CDS-5UTR	ENST00000331615	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000346141		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000325752		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000340993		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000394239		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000592426		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000376094		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-intron	ENST00000592564	ENST00000539018		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
intron-5UTR	ENST00000592564	ENST00000591611		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TMEM106A	chr17	41369331	+	TUBD1	chr17	57963591	-
5UTR-intron	ENST00000393330	ENST00000010404		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-intron	ENST00000393330	ENST00000396210		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-intron	ENST00000393330	ENST00000535309		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-intron	ENST00000393330	ENST00000540056		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-intron	ENST00000393330	ENST00000396209		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-intron	ENST00000393330	ENST00000396207		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-intron	ENST00000393330	ENST00000359720		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000010404		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000396210		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000535309		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000540056		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000396209		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000396207		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000247829	ENST00000359720		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000010404		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000396210		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000535309		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000540056		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000396209		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000396207		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000546561	ENST00000359720		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000010404		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000396210		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000535309		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000540056		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000396209		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000396207		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552128	ENST00000359720		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000010404		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000396210		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000535309		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000540056		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000396209		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000396207		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
intron-intron	ENST00000552786	ENST00000359720		TCGA	LD	BRCA	TCGA-BH-A1EV-01A	TSPAN8	chr12	71676496	-	MGST1	chr12	16742462	+
5UTR-3CDS	ENST00000229195	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
5UTR-intron	ENST00000229195	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
5UTR-3CDS	ENST00000418359	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
5UTR-intron	ENST00000418359	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
intron-3CDS	ENST00000548230	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
intron-intron	ENST00000548230	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
intron-3CDS	ENST00000551483	ENST00000359062		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
intron-intron	ENST00000551483	ENST00000544307		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	CNOT2	chr12	70637260	+	PDE3A	chr12	20709594	+
Frame-shit	ENST00000308086	ENST00000398016		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
Frame-shit	ENST00000308086	ENST00000359742		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
Frame-shit	ENST00000308086	ENST00000286445		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000308086	ENST00000542021		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
Frame-shit	ENST00000547843	ENST00000398016		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
Frame-shit	ENST00000547843	ENST00000359742		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
Frame-shit	ENST00000547843	ENST00000286445		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000547843	ENST00000542021		TCGA	LD	BRCA	TCGA-BH-A1EW-01A	THAP2	chr12	72058360	+	GRIP1	chr12	66935730	-
Frame-shit	ENST00000539909	ENST00000555577		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000539909	ENST00000370649		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000539909	ENST00000370631		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000286621	ENST00000555577		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000286621	ENST00000370649		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000286621	ENST00000370631		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000372734	ENST00000555577		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000372734	ENST00000370649		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000372734	ENST00000370631		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000541550	ENST00000555577		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000541550	ENST00000370649		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
Frame-shit	ENST00000541550	ENST00000370631		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
intron-3CDS	ENST00000467840	ENST00000555577		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
intron-3CDS	ENST00000467840	ENST00000370649		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
intron-3CDS	ENST00000467840	ENST00000370631		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ADK	chr10	75960596	+	PI4K2A	chr10	99416042	+
5CDS-intron	ENST00000309117	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000309117	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000309117	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5UTR-intron	ENST00000399000	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5UTR-intron	ENST00000399000	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5UTR-intron	ENST00000399000	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5UTR-intron	ENST00000288304	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5UTR-intron	ENST00000288304	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5UTR-intron	ENST00000288304	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000539844	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000539844	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000539844	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000399001	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000399001	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000399001	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000476950	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000476950	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000476950	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000398998	ENST00000286800		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000398998	ENST00000399921		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
5CDS-intron	ENST00000398998	ENST00000462262		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	DSCR3	chr21	38639539	-	BACH1	chr21	30642678	+
Frame-shit	ENST00000336648	ENST00000290200		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	HLCS	chr21	38269160	-	IL10RB	chr21	34660409	+
In-frame	ENST00000399120	ENST00000290200		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	HLCS	chr21	38269160	-	IL10RB	chr21	34660409	+
intron-3CDS	ENST00000482273	ENST00000290200		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	HLCS	chr21	38269160	-	IL10RB	chr21	34660409	+
5UTR-3CDS	ENST00000471540	ENST00000330317		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5UTR-5UTR	ENST00000471540	ENST00000492742		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5UTR-5UTR	ENST00000471540	ENST00000398208		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
Frame-shit	ENST00000349485	ENST00000330317		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5CDS-5UTR	ENST00000349485	ENST00000492742		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5CDS-5UTR	ENST00000349485	ENST00000398208		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
Frame-shit	ENST00000331343	ENST00000330317		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5CDS-5UTR	ENST00000331343	ENST00000492742		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5CDS-5UTR	ENST00000331343	ENST00000398208		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	POFUT2	chr21	46702264	-	WDR4	chr21	44275890	-
5CDS-3UTR	ENST00000397887	ENST00000460783		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000397887	ENST00000290399		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000397887	ENST00000430056		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000330938	ENST00000460783		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000330938	ENST00000290399		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000330938	ENST00000430056		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000445724	ENST00000460783		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000445724	ENST00000290399		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
5CDS-3UTR	ENST00000445724	ENST00000430056		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
intron-3UTR	ENST00000397886	ENST00000460783		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
intron-3UTR	ENST00000397886	ENST00000290399		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
intron-3UTR	ENST00000397886	ENST00000430056		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
intron-3UTR	ENST00000494690	ENST00000460783		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
intron-3UTR	ENST00000494690	ENST00000290399		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
intron-3UTR	ENST00000494690	ENST00000430056		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	PTTG1IP	chr21	46293417	-	SIM2	chr21	38081468	+
In-frame	ENST00000380680	ENST00000420680		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000347302		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000254182		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000541801		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000391703		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000299871		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000544273		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000380680	ENST00000240731		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	UBL3	chr13	30423649	-	ZNF211	chr19	58152072	+
Frame-shit	ENST00000391701	ENST00000380680		TCGA	LD	BRCA	TCGA-BH-A1EY-01A	ZNF552	chr19	58324662	-	UBL3	chr13	30351400	-
In-frame	ENST00000572681	ENST00000376881		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
Frame-shit	ENST00000572681	ENST00000488757		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
In-frame	ENST00000572681	ENST00000376883		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000432222		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000549501		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000549167		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000435906		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000547542		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000548574		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000437216		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000552898		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000552809		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000416974		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000552987		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000548769		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000383628		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000548001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000548337		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000448114		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000549312		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000553137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000446005		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000572681	ENST00000547911		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-3CDS	ENST00000575839	ENST00000376881		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-3CDS	ENST00000575839	ENST00000488757		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-3CDS	ENST00000575839	ENST00000376883		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000432222		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000549501		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000549167		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000435906		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000547542		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000548574		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000437216		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000552898		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000552809		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000416974		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000552987		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000548769		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000383628		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000548001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000548337		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000448114		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000549312		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000553137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000446005		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
intron-intron	ENST00000575839	ENST00000547911		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
In-frame	ENST00000160740	ENST00000376881		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
Frame-shit	ENST00000160740	ENST00000488757		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
In-frame	ENST00000160740	ENST00000376883		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000432222		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000549501		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000549167		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000435906		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000547542		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000548574		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000437216		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000552898		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000552809		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000416974		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000552987		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000548769		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000383628		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000548001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000548337		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000448114		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000549312		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000553137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000446005		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000160740	ENST00000547911		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
In-frame	ENST00000575354	ENST00000376881		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
Frame-shit	ENST00000575354	ENST00000488757		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
In-frame	ENST00000575354	ENST00000376883		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000432222		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000549501		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000549167		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000435906		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000547542		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000548574		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000437216		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000552898		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000552809		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000416974		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000552987		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000548769		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000383628		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000548001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000548337		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000448114		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000549312		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000553137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000446005		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
5CDS-intron	ENST00000575354	ENST00000547911		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	CIC	chr19	42791392	+	ZFP57	chr6	29641535	-
Frame-shit	ENST00000509793	ENST00000265162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
5CDS-intron	ENST00000509793	ENST00000504100		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
Frame-shit	ENST00000265171	ENST00000265162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
5CDS-intron	ENST00000265171	ENST00000504100		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
Frame-shit	ENST00000503392	ENST00000265162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
5CDS-intron	ENST00000503392	ENST00000504100		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
intron-3CDS	ENST00000502723	ENST00000265162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
intron-intron	ENST00000502723	ENST00000504100		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	EGF	chr4	110834618	+	ENPEP	chr4	111409697	+
5UTR-3CDS	ENST00000303116	ENST00000236959		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	FAM117B	chr2	203500511	+	ATIC	chr2	216177221	+
5UTR-5UTR	ENST00000303116	ENST00000540518		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	FAM117B	chr2	203500511	+	ATIC	chr2	216177221	+
5UTR-5UTR	ENST00000303116	ENST00000435675		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	FAM117B	chr2	203500511	+	ATIC	chr2	216177221	+
In-frame	ENST00000392238	ENST00000236959		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	FAM117B	chr2	203500511	+	ATIC	chr2	216177221	+
5CDS-5UTR	ENST00000392238	ENST00000540518		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	FAM117B	chr2	203500511	+	ATIC	chr2	216177221	+
5CDS-5UTR	ENST00000392238	ENST00000435675		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	FAM117B	chr2	203500511	+	ATIC	chr2	216177221	+
5CDS-5UTR	ENST00000367837	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000367837	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-intron	ENST00000367837	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000527578	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000527578	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-intron	ENST00000527578	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000415177	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000415177	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-intron	ENST00000415177	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000367826	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000367826	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-intron	ENST00000367826	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000367824	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-5UTR	ENST00000367824	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5CDS-intron	ENST00000367824	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5UTR-5UTR	ENST00000445176	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5UTR-5UTR	ENST00000445176	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5UTR-intron	ENST00000445176	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000314674	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000314674	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-intron	ENST00000314674	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000367822	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000367822	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-intron	ENST00000367822	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000367820	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000367820	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-intron	ENST00000367820	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000525067	ENST00000368972		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-5UTR	ENST00000525067	ENST00000392644		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
intron-intron	ENST00000525067	ENST00000481850		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HBS1L	chr6	135318535	-	ARMC2	chr6	109197346	+
5UTR-3CDS	ENST00000372583	ENST00000369162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000372583	ENST00000522650		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000372583	ENST00000369143		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-3CDS	ENST00000372584	ENST00000369162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000372584	ENST00000522650		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000372584	ENST00000369143		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-3CDS	ENST00000247584	ENST00000369162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000247584	ENST00000522650		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000247584	ENST00000369143		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-3CDS	ENST00000429157	ENST00000369162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000429157	ENST00000522650		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5UTR-intron	ENST00000429157	ENST00000369143		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
intron-3CDS	ENST00000460604	ENST00000369162		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
intron-intron	ENST00000460604	ENST00000522650		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
intron-intron	ENST00000460604	ENST00000369143		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HIVEP3	chr1	42094420	-	ASCC3	chr6	101054964	-
5CDS-3UTR	ENST00000301785	ENST00000513247		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HNRNPUL2	chr11	62494091	-	TTC9C	chr11	62502854	+
5CDS-3UTR	ENST00000301785	ENST00000316461		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HNRNPUL2	chr11	62494091	-	TTC9C	chr11	62502854	+
5CDS-3UTR	ENST00000301785	ENST00000532583		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	HNRNPUL2	chr11	62494091	-	TTC9C	chr11	62502854	+
intron-5UTR	ENST00000494598	ENST00000259119		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000494598	ENST00000426052		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000494598	ENST00000490989		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000494598	ENST00000413427		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000494598	ENST00000458537		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000460012	ENST00000259119		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000460012	ENST00000426052		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-3UTR	ENST00000460012	ENST00000490989		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000460012	ENST00000413427		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000460012	ENST00000458537		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000447496	ENST00000259119		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000447496	ENST00000426052		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000447496	ENST00000490989		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000447496	ENST00000413427		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000447496	ENST00000458537		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000340059	ENST00000259119		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000340059	ENST00000426052		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000340059	ENST00000490989		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000340059	ENST00000413427		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000340059	ENST00000458537		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000414191	ENST00000259119		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000414191	ENST00000426052		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000414191	ENST00000490989		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000414191	ENST00000413427		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000414191	ENST00000458537		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000334686	ENST00000259119		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000334686	ENST00000426052		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-3UTR	ENST00000334686	ENST00000490989		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000334686	ENST00000413427		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000334686	ENST00000458537		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PLCH1	chr3	155421935	-	SKIL	chr3	170077487	+
Frame-shit	ENST00000421748	ENST00000368919		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000421748	ENST00000330550		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000421748	ENST00000439654		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
In-frame	ENST00000421748	ENST00000456137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000421748	ENST00000461487		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000404125	ENST00000368919		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000404125	ENST00000330550		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000404125	ENST00000439654		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
In-frame	ENST00000404125	ENST00000456137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000404125	ENST00000461487		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000476586	ENST00000368919		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000476586	ENST00000330550		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000476586	ENST00000439654		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000476586	ENST00000456137		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
intron-5UTR	ENST00000476586	ENST00000461487		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PSME4	chr2	54101476	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000359947	ENST00000357001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRF	chr1	44019612	+	GUCA2A	chr1	42629281	-
Frame-shit	ENST00000438120	ENST00000357001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRF	chr1	44019612	+	GUCA2A	chr1	42629281	-
Frame-shit	ENST00000372413	ENST00000357001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRF	chr1	44019612	+	GUCA2A	chr1	42629281	-
Frame-shit	ENST00000372414	ENST00000357001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRF	chr1	44019612	+	GUCA2A	chr1	42629281	-
intron-3CDS	ENST00000422171	ENST00000357001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRF	chr1	44019612	+	GUCA2A	chr1	42629281	-
intron-3CDS	ENST00000496447	ENST00000357001		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRF	chr1	44019612	+	GUCA2A	chr1	42629281	-
Frame-shit	ENST00000368226	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368226	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368226	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000368226	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368227	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368227	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368227	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000368227	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000532331	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000532331	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000532331	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000532331	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368213	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368213	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368213	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000368213	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368210	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368210	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368210	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000368210	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368215	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368215	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368215	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000368215	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368207	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368207	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000368207	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000368207	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5UTR-3CDS	ENST00000524481	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5UTR-3CDS	ENST00000524481	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5UTR-3CDS	ENST00000524481	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5UTR-intron	ENST00000524481	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000525459	ENST00000405204		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000525459	ENST00000443043		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
Frame-shit	ENST00000525459	ENST00000311381		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
5CDS-intron	ENST00000525459	ENST00000489790		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	PTPRK	chr6	128841404	-	C6orf203	chr6	107365464	+
In-frame	ENST00000275159	ENST00000367837		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000275159	ENST00000527578		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000275159	ENST00000415177		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000275159	ENST00000367826		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000275159	ENST00000367824		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000275159	ENST00000445176		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000275159	ENST00000314674		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000275159	ENST00000367822		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000275159	ENST00000367820		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000275159	ENST00000525067		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000398212	ENST00000367837		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000398212	ENST00000527578		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000398212	ENST00000415177		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000398212	ENST00000367826		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000398212	ENST00000367824		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000398212	ENST00000445176		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000398212	ENST00000314674		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000398212	ENST00000367822		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000398212	ENST00000367820		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
5CDS-intron	ENST00000398212	ENST00000525067		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-3CDS	ENST00000398197	ENST00000367837		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-3CDS	ENST00000398197	ENST00000527578		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-3CDS	ENST00000398197	ENST00000415177		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-3CDS	ENST00000398197	ENST00000367826		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-3CDS	ENST00000398197	ENST00000367824		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-3CDS	ENST00000398197	ENST00000445176		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-intron	ENST00000398197	ENST00000314674		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-intron	ENST00000398197	ENST00000367822		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-intron	ENST00000398197	ENST00000367820		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
intron-intron	ENST00000398197	ENST00000525067		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	TBC1D32	chr6	121600267	-	HBS1L	chr6	135315013	-
In-frame	ENST00000395996	ENST00000367800		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000395996	ENST00000457866		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000395996	ENST00000417892		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000395996	ENST00000327035		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000395996	ENST00000488690		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000395996	ENST00000367798		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000395996	ENST00000528103		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000395996	ENST00000534469		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000395996	ENST00000531527		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000358544	ENST00000367800		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000358544	ENST00000457866		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000358544	ENST00000417892		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000358544	ENST00000327035		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000358544	ENST00000488690		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000358544	ENST00000367798		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000358544	ENST00000528103		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000358544	ENST00000534469		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000358544	ENST00000531527		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000357162	ENST00000367800		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000357162	ENST00000457866		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000357162	ENST00000417892		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000357162	ENST00000327035		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000357162	ENST00000488690		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000357162	ENST00000367798		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000357162	ENST00000528103		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000357162	ENST00000534469		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000357162	ENST00000531527		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000355155	ENST00000367800		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000355155	ENST00000457866		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000355155	ENST00000417892		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000355155	ENST00000327035		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000355155	ENST00000488690		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000355155	ENST00000367798		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000355155	ENST00000528103		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000355155	ENST00000534469		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000355155	ENST00000531527		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000441350	ENST00000367800		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000441350	ENST00000457866		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000441350	ENST00000417892		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000441350	ENST00000327035		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000441350	ENST00000488690		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000441350	ENST00000367798		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000441350	ENST00000528103		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000441350	ENST00000534469		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
5CDS-intron	ENST00000441350	ENST00000531527		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-3CDS	ENST00000521932	ENST00000367800		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-3CDS	ENST00000521932	ENST00000457866		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-3CDS	ENST00000521932	ENST00000417892		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-intron	ENST00000521932	ENST00000327035		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-intron	ENST00000521932	ENST00000488690		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-intron	ENST00000521932	ENST00000367798		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-intron	ENST00000521932	ENST00000528103		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-intron	ENST00000521932	ENST00000534469		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
intron-intron	ENST00000521932	ENST00000531527		TCGA	LD	BRCA	TCGA-BH-A1F0-01A	VPS13B	chr8	100050794	+	AHI1	chr6	135644462	-
In-frame	ENST00000393271	ENST00000584601		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000393271	ENST00000406381		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000393271	ENST00000541774		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000393271	ENST00000445658		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000393271	ENST00000540147		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000393271	ENST00000584450		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000393271	ENST00000269571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000393271	ENST00000578199		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000393271	ENST00000540042		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000393271	ENST00000584888		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000584601		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000406381		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000541774		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000445658		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000540147		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000584450		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000338165	ENST00000269571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000338165	ENST00000578199		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000338165	ENST00000540042		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000338165	ENST00000584888		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000584601		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000406381		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000541774		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000445658		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000540147		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000584450		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
In-frame	ENST00000511648	ENST00000269571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000511648	ENST00000578199		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000511648	ENST00000540042		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
5CDS-intron	ENST00000511648	ENST00000584888		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	EME1	chr17	48452873	+	ERBB2	chr17	37882815	+
intron-3CDS	ENST00000269554	ENST00000535458		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000269554	ENST00000290158		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000269554	ENST00000540627		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000269554	ENST00000537679		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-intron	ENST00000269554	ENST00000577918		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000311500	ENST00000535458		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000311500	ENST00000290158		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000311500	ENST00000540627		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000311500	ENST00000537679		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-intron	ENST00000311500	ENST00000577918		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	PIP4K2B	chr17	36923821	-	KPNB1	chr17	45757386	+
intron-3CDS	ENST00000299341	ENST00000337451		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000299341	ENST00000398014		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000299341	ENST00000398013		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000299341	ENST00000539711		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000299341	ENST00000359727		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-intron	ENST00000299341	ENST00000559571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000376352	ENST00000337451		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000376352	ENST00000398014		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000376352	ENST00000398013		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000376352	ENST00000539711		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000376352	ENST00000359727		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
5CDS-intron	ENST00000376352	ENST00000559571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000405898	ENST00000337451		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000405898	ENST00000398014		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000405898	ENST00000398013		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000405898	ENST00000539711		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000405898	ENST00000359727		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-intron	ENST00000405898	ENST00000559571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000434978	ENST00000337451		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000434978	ENST00000398014		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000434978	ENST00000398013		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000434978	ENST00000539711		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
In-frame	ENST00000434978	ENST00000359727		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
5CDS-intron	ENST00000434978	ENST00000559571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000398391	ENST00000337451		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000398391	ENST00000398014		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000398391	ENST00000398013		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000398391	ENST00000539711		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-3CDS	ENST00000398391	ENST00000359727		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
intron-intron	ENST00000398391	ENST00000559571		TCGA	LD	BRCA	TCGA-BH-A1F2-01A	STXBP4	chr17	53158544	+	NIPA2	chr15	23014528	+
5CDS-5UTR	ENST00000396373	ENST00000228438		TCGA	LD	BRCA	TCGA-BH-A1F5-01A	ETV6	chr12	12038960	+	CLEC2B	chr12	10015172	-
5CDS-intron	ENST00000396373	ENST00000538152		TCGA	LD	BRCA	TCGA-BH-A1F5-01A	ETV6	chr12	12038960	+	CLEC2B	chr12	10015172	-
intron-5UTR	ENST00000544715	ENST00000228438		TCGA	LD	BRCA	TCGA-BH-A1F5-01A	ETV6	chr12	12038960	+	CLEC2B	chr12	10015172	-
intron-intron	ENST00000544715	ENST00000538152		TCGA	LD	BRCA	TCGA-BH-A1F5-01A	ETV6	chr12	12038960	+	CLEC2B	chr12	10015172	-
5UTR-3CDS	ENST00000328090	ENST00000355029		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
5UTR-5UTR	ENST00000328090	ENST00000542715		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
5UTR-intron	ENST00000328090	ENST00000380359		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
5UTR-intron	ENST00000328090	ENST00000484741		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
intron-3CDS	ENST00000463468	ENST00000355029		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
intron-5UTR	ENST00000463468	ENST00000542715		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
intron-intron	ENST00000463468	ENST00000380359		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
intron-intron	ENST00000463468	ENST00000484741		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	FAM208B	chr10	5727138	+	NET1	chr10	5468618	+
In-frame	ENST00000339474	ENST00000439174		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
In-frame	ENST00000339474	ENST00000541118		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
5UTR-3CDS	ENST00000584306	ENST00000439174		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
5UTR-3CDS	ENST00000584306	ENST00000541118		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000400877	ENST00000439174		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000400877	ENST00000541118		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000334962	ENST00000439174		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000334962	ENST00000541118		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000319651	ENST00000439174		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000319651	ENST00000541118		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000577487	ENST00000439174		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000577487	ENST00000541118		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	LRRC37A3	chr17	62914868	-	GNA13	chr17	63014421	-
Frame-shit	ENST00000530878	ENST00000361951		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000530878	ENST00000239457		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000530878	ENST00000471476		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
Frame-shit	ENST00000361897	ENST00000361951		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000361897	ENST00000239457		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000361897	ENST00000471476		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000493151	ENST00000361951		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000493151	ENST00000239457		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-intron	ENST00000493151	ENST00000471476		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000454693	ENST00000361951		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000454693	ENST00000239457		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-intron	ENST00000454693	ENST00000471476		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	NOS1AP	chr1	162124266	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000541156	ENST00000248929		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000541156	ENST00000454798		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000357137	ENST00000248929		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000357137	ENST00000454798		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000544094	ENST00000248929		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000544094	ENST00000454798		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000414396	ENST00000248929		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000414396	ENST00000454798		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000482652	ENST00000248929		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000482652	ENST00000454798		TCGA	LD	BRCA	TCGA-BH-A1F6-01A	XPNPEP3	chr22	41266143	+	SGSM3	chr22	40796700	+
Frame-shit	ENST00000376030	ENST00000262915		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000351035		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372374		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000353126		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000545417		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000330208		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000335430		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372377		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000361392		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000361400		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000347631		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000361812		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000531451		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372366		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372365		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372368		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000332628		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000376030	ENST00000372372		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000531816		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000528371		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000372369		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000531993		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000361746		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000533933		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000376030	ENST00000372367		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-3UTR	ENST00000376030	ENST00000461375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000262915		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000351035		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372374		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000353126		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000545417		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000330208		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000335430		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372377		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000361392		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000361400		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000347631		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000361812		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000531451		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372366		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372365		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372368		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000332628		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000503743	ENST00000372372		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000531816		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000528371		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000372369		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000531993		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000361746		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000533933		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000503743	ENST00000372367		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-3UTR	ENST00000503743	ENST00000461375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000262915		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000351035		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372374		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000353126		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000545417		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000330208		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000335430		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372377		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000361392		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000361400		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000347631		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000361812		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000531451		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372366		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372365		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372368		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000332628		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000422387	ENST00000372372		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000531816		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000528371		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000372369		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000531993		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000361746		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000533933		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000422387	ENST00000372367		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-3UTR	ENST00000422387	ENST00000461375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000262915		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000351035		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372374		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000353126		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000545417		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000330208		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000335430		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372377		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000361392		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000361400		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000347631		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000361812		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000531451		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372366		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372365		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372368		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000332628		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000361144	ENST00000372372		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000531816		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000528371		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000372369		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000531993		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000361746		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000533933		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000361144	ENST00000372367		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-3UTR	ENST00000361144	ENST00000461375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000262915		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000351035		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372374		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000353126		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000545417		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000330208		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000335430		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372377		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000361392		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000361400		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000347631		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000361812		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000531451		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372366		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372365		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372368		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000332628		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400798	ENST00000372372		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000531816		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000528371		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000372369		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000531993		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000361746		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000533933		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400798	ENST00000372367		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-3UTR	ENST00000400798	ENST00000461375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000262915		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000351035		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372374		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000353126		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000545417		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000330208		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000335430		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372377		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000361392		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000361400		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000347631		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000361812		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000531451		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372366		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372365		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372368		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000332628		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
Frame-shit	ENST00000400797	ENST00000372372		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000531816		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000528371		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000372369		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000531993		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000361746		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000533933		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-intron	ENST00000400797	ENST00000372367		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
5CDS-3UTR	ENST00000400797	ENST00000461375		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KAZN	chr1	15287371	+	ST3GAL3	chr1	44360055	+
In-frame	ENST00000250916	ENST00000292363		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KLF16	chr19	1863040	-	RNF126	chr19	652884	-
intron-3CDS	ENST00000592313	ENST00000292363		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	KLF16	chr19	1863040	-	RNF126	chr19	652884	-
3UTR-3CDS	ENST00000482253	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
3UTR-3CDS	ENST00000482253	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
3UTR-3CDS	ENST00000482253	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
3UTR-3CDS	ENST00000482253	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
3UTR-3CDS	ENST00000482253	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
3UTR-3CDS	ENST00000482253	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000609116	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000609116	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000609116	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000609116	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000609116	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000609116	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370197	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370197	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370197	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370197	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370197	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370197	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370198	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370198	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370198	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370198	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370198	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000370198	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000426398	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000426398	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000426398	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000426398	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000426398	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000426398	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000394184	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000394184	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000394184	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000394184	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000394184	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000394184	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000541987	ENST00000376030		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000541987	ENST00000503743		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000541987	ENST00000422387		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000541987	ENST00000361144		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000541987	ENST00000400798		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
5UTR-3CDS	ENST00000541987	ENST00000400797		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTBP2	chr1	97189150	+	KAZN	chr1	15361245	+
Frame-shit	ENST00000345512	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
Frame-shit	ENST00000373779	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
Frame-shit	ENST00000356870	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
Frame-shit	ENST00000323874	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
Frame-shit	ENST00000428026	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
Frame-shit	ENST00000460170	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
intron-3CDS	ENST00000415600	ENST00000390560		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	PTPRU	chr1	29647291	+	IGHJ6	chr14	106329466	-
In-frame	ENST00000262879	ENST00000373433		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000262879	ENST00000471511		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
In-frame	ENST00000397042	ENST00000373433		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000397042	ENST00000471511		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
In-frame	ENST00000397038	ENST00000373433		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000397038	ENST00000471511		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
In-frame	ENST00000537204	ENST00000373433		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000537204	ENST00000471511		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
In-frame	ENST00000397040	ENST00000373433		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
5CDS-intron	ENST00000397040	ENST00000471511		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
intron-3CDS	ENST00000490114	ENST00000373433		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
intron-intron	ENST00000490114	ENST00000471511		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RALGAPB	chr20	37145013	+	RPRD1B	chr20	36694483	+
Frame-shit	ENST00000242719	ENST00000371268		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RNF11	chr1	51702551	+	TMEM61	chr1	55457509	+
3UTR-3CDS	ENST00000494873	ENST00000371268		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	RNF11	chr1	51702551	+	TMEM61	chr1	55457509	+
5CDS-intron	ENST00000393651	ENST00000356362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000393651	ENST00000469408		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000357311	ENST00000356362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000357311	ENST00000469408		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000489828	ENST00000356362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000489828	ENST00000469408		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000493638	ENST00000356362		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000493638	ENST00000469408		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
Frame-shit	ENST00000262915	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000262915	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000262915	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000262915	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372375	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372375	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372375	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372375	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000351035	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000351035	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000351035	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000351035	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-3CDS	ENST00000372374	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-3CDS	ENST00000372374	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-3CDS	ENST00000372374	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-5UTR	ENST00000372374	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000353126	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000353126	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000353126	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000353126	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000545417	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000545417	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000545417	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000545417	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000330208	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000330208	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000330208	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000330208	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000335430	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000335430	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000335430	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000335430	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372377	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372377	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372377	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372377	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361392	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361392	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361392	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000361392	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361400	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361400	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361400	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000361400	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000347631	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000347631	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000347631	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000347631	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361812	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361812	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361812	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000361812	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372362	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372362	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372362	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372362	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531451	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531451	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531451	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000531451	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372366	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372366	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372366	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372366	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372365	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372365	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372365	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372365	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372368	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372368	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372368	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372368	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-3CDS	ENST00000332628	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-3CDS	ENST00000332628	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-3CDS	ENST00000332628	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
intron-5UTR	ENST00000332628	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372372	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372372	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372372	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372372	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531816	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531816	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531816	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000531816	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000528371	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000528371	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000528371	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000528371	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372369	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372369	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372369	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372369	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531993	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531993	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000531993	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000531993	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361746	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361746	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000361746	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000361746	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000533933	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000533933	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000533933	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000533933	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372367	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372367	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000372367	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
5CDS-5UTR	ENST00000372367	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
3UTR-3CDS	ENST00000461375	ENST00000371884		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
3UTR-3CDS	ENST00000461375	ENST00000371883		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
3UTR-3CDS	ENST00000461375	ENST00000294339		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
3UTR-5UTR	ENST00000461375	ENST00000459729		TCGA	LD	BRCA	TCGA-BH-A1FC-01A	ST3GAL3	chr1	44303983	+	TAL1	chr1	47685846	-
Frame-shit	ENST00000369905	ENST00000260746		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ACTR1A	chr10	104262357	-	ARL3	chr10	104436698	-
intron-3CDS	ENST00000470322	ENST00000260746		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ACTR1A	chr10	104262357	-	ARL3	chr10	104436698	-
Frame-shit	ENST00000487599	ENST00000260746		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ACTR1A	chr10	104262357	-	ARL3	chr10	104436698	-
5UTR-3CDS	ENST00000545684	ENST00000260746		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ACTR1A	chr10	104262357	-	ARL3	chr10	104436698	-
5UTR-3CDS	ENST00000446605	ENST00000260746		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ACTR1A	chr10	104262357	-	ARL3	chr10	104436698	-
5CDS-intron	ENST00000338110	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000338110	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000395248	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000395248	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
intron-intron	ENST00000575627	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
intron-intron	ENST00000575627	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000566897	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000566897	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000569545	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000569545	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000563060	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000563060	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000412304	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000412304	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000564546	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000564546	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000564595	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000564595	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000569798	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000569798	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000395240	ENST00000483405		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
5CDS-intron	ENST00000395240	ENST00000308748		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ALDOA	chr16	30078982	+	ASPHD1	chr16	29930852	+
Frame-shit	ENST00000374580	ENST00000303116		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	BMPR2	chr2	203242273	+	FAM117B	chr2	203589640	+
Frame-shit	ENST00000374580	ENST00000392238		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	BMPR2	chr2	203242273	+	FAM117B	chr2	203589640	+
Frame-shit	ENST00000374574	ENST00000303116		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	BMPR2	chr2	203242273	+	FAM117B	chr2	203589640	+
Frame-shit	ENST00000374574	ENST00000392238		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	BMPR2	chr2	203242273	+	FAM117B	chr2	203589640	+
intron-3CDS	ENST00000479069	ENST00000303116		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	BMPR2	chr2	203242273	+	FAM117B	chr2	203589640	+
intron-3CDS	ENST00000479069	ENST00000392238		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	BMPR2	chr2	203242273	+	FAM117B	chr2	203589640	+
5CDS-intron	ENST00000252599	ENST00000529490		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
5CDS-intron	ENST00000252599	ENST00000317040		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
5CDS-intron	ENST00000252599	ENST00000392702		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
5CDS-intron	ENST00000252599	ENST00000529939		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
5CDS-intron	ENST00000252599	ENST00000528515		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
5CDS-intron	ENST00000252599	ENST00000543795		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
intron-intron	ENST00000601354	ENST00000529490		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
intron-intron	ENST00000601354	ENST00000317040		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
intron-intron	ENST00000601354	ENST00000392702		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
intron-intron	ENST00000601354	ENST00000529939		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
intron-intron	ENST00000601354	ENST00000528515		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
intron-intron	ENST00000601354	ENST00000543795		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	COLGALT1	chr19	17671274	+	MVB12A	chr19	17531122	+
Frame-shit	ENST00000453996	ENST00000262430		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	CTU2	chr16	88779313	+	MLYCD	chr16	83945823	+
Frame-shit	ENST00000378384	ENST00000262430		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	CTU2	chr16	88779313	+	MLYCD	chr16	83945823	+
Frame-shit	ENST00000312060	ENST00000262430		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	CTU2	chr16	88779313	+	MLYCD	chr16	83945823	+
Frame-shit	ENST00000567949	ENST00000262430		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	CTU2	chr16	88779313	+	MLYCD	chr16	83945823	+
5CDS-5UTR	ENST00000440973	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000440973	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000440973	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000338799	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000338799	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000338799	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000456483	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000456483	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000456483	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000443427	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000443427	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000443427	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000206249	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000206249	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000206249	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
intron-5UTR	ENST00000406599	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
intron-intron	ENST00000406599	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
intron-5UTR	ENST00000406599	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000427531	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000427531	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-5UTR	ENST00000427531	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
intron-5UTR	ENST00000482101	ENST00000372236		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
intron-intron	ENST00000482101	ENST00000535400		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
intron-5UTR	ENST00000482101	ENST00000372226		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	ESR1	chr6	152332929	+	POLH	chr6	43550053	+
5CDS-intron	ENST00000518270	ENST00000408388		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	GOLGA7	chr8	41348484	+	PVT1	chr8	129001408	+
5CDS-intron	ENST00000520817	ENST00000408388		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	GOLGA7	chr8	41348484	+	PVT1	chr8	129001408	+
5CDS-intron	ENST00000405786	ENST00000408388		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	GOLGA7	chr8	41348484	+	PVT1	chr8	129001408	+
5CDS-intron	ENST00000357743	ENST00000408388		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	GOLGA7	chr8	41348484	+	PVT1	chr8	129001408	+
intron-intron	ENST00000521417	ENST00000408388		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	GOLGA7	chr8	41348484	+	PVT1	chr8	129001408	+
In-frame	ENST00000316157	ENST00000381312		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000316157	ENST00000381310		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
5CDS-intron	ENST00000316157	ENST00000381305		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
5CDS-5UTR	ENST00000316157	ENST00000469464		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
intron-3CDS	ENST00000469487	ENST00000381312		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
intron-intron	ENST00000469487	ENST00000381310		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
intron-intron	ENST00000469487	ENST00000381305		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
intron-5UTR	ENST00000469487	ENST00000469464		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	LARP4B	chr10	888872	-	ADARB2	chr10	1263059	-
5CDS-3UTR	ENST00000344683	ENST00000521788		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
5CDS-3UTR	ENST00000344683	ENST00000332843		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
5CDS-3UTR	ENST00000519480	ENST00000521788		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
5CDS-3UTR	ENST00000519480	ENST00000332843		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
5CDS-3UTR	ENST00000522905	ENST00000521788		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
5CDS-3UTR	ENST00000522905	ENST00000332843		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000521175	ENST00000521788		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000521175	ENST00000332843		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	MCPH1	chr8	6272404	+	COLEC10	chr8	120101919	+
intron-3CDS	ENST00000322723	ENST00000349938		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	NCL	chr2	232347395	-	ARMC9	chr2	232196505	+
intron-3UTR	ENST00000322723	ENST00000483477		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	NCL	chr2	232347395	-	ARMC9	chr2	232196505	+
Frame-shit	ENST00000322191	ENST00000539993		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
Frame-shit	ENST00000322191	ENST00000518698		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000322191	ENST00000349492		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000322191	ENST00000523686		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000322191	ENST00000348340		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000322191	ENST00000337103		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000322191	ENST00000325233		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
Frame-shit	ENST00000342512	ENST00000539993		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
Frame-shit	ENST00000342512	ENST00000518698		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000342512	ENST00000349492		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000342512	ENST00000523686		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000342512	ENST00000348340		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000342512	ENST00000337103		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000342512	ENST00000325233		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
Frame-shit	ENST00000371774	ENST00000539993		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
Frame-shit	ENST00000371774	ENST00000518698		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000371774	ENST00000349492		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000371774	ENST00000523686		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000371774	ENST00000348340		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000371774	ENST00000337103		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5CDS-intron	ENST00000371774	ENST00000325233		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000307534	ENST00000539993		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000307534	ENST00000518698		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000307534	ENST00000349492		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000307534	ENST00000523686		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000307534	ENST00000348340		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000307534	ENST00000337103		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000307534	ENST00000325233		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-3CDS	ENST00000488482	ENST00000539993		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-3CDS	ENST00000488482	ENST00000518698		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-intron	ENST00000488482	ENST00000349492		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-intron	ENST00000488482	ENST00000523686		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-intron	ENST00000488482	ENST00000348340		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-intron	ENST00000488482	ENST00000337103		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
5UTR-intron	ENST00000488482	ENST00000325233		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PANK1	chr10	91403454	-	C8orf34	chr8	69621229	+
Frame-shit	ENST00000381885	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000381885	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000381885	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000396923	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000396923	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000396923	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000360301	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000360301	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000360301	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000360135	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000360135	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000360135	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
In-frame	ENST00000334933	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
In-frame	ENST00000334933	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000334933	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000420765	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000420765	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000420765	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000381879	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
Frame-shit	ENST00000381879	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000381879	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
In-frame	ENST00000348806	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
In-frame	ENST00000348806	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5CDS-5UTR	ENST00000348806	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5UTR-3CDS	ENST00000432870	ENST00000417257		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5UTR-3CDS	ENST00000432870	ENST00000402883		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
5UTR-5UTR	ENST00000432870	ENST00000484674		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PPIP5K1	chr15	43868569	-	FRMD5	chr15	44216507	-
intron-3CDS	ENST00000408388	ENST00000355849		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PVT1	chr8	128903244	+	KHDRBS3	chr8	136659236	+
intron-3CDS	ENST00000408388	ENST00000520981		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PVT1	chr8	128903244	+	KHDRBS3	chr8	136659236	+
intron-intron	ENST00000408388	ENST00000522578		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	PVT1	chr8	128903244	+	KHDRBS3	chr8	136659236	+
intron-3CDS	ENST00000220676	ENST00000521861		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	RP1	chr8	55471880	+	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000220676	ENST00000276682		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	RP1	chr8	55471880	+	EIF3H	chr8	117671219	-
Frame-shit	ENST00000343846	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000343846	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000343846	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5CDS-intron	ENST00000343846	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000366878	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000366878	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000366878	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5CDS-intron	ENST00000366878	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000484758	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000484758	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000484758	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5CDS-intron	ENST00000484758	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000494793	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000494793	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000494793	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5CDS-intron	ENST00000494793	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-3CDS	ENST00000478605	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-3CDS	ENST00000478605	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-3CDS	ENST00000478605	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-intron	ENST00000478605	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-3CDS	ENST00000454695	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-3CDS	ENST00000454695	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-3CDS	ENST00000454695	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5UTR-intron	ENST00000454695	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000344029	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000344029	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000344029	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5CDS-intron	ENST00000344029	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000366877	ENST00000366574		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000366877	ENST00000360064		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000366877	ENST00000542537		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
5CDS-intron	ENST00000366877	ENST00000609119		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SUSD4	chr1	223536620	-	RYR2	chr1	237664011	+
Frame-shit	ENST00000367255	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000367255	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
Frame-shit	ENST00000356820	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000356820	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000423061	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
Frame-shit	ENST00000423061	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
Frame-shit	ENST00000448038	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000448038	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
Frame-shit	ENST00000341594	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000341594	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
Frame-shit	ENST00000265368	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000265368	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000367253	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000367253	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000367248	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000367248	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000413186	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000413186	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000466159	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000466159	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000539504	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000539504	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000347037	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000347037	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000354674	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000354674	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000495090	ENST00000367225		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
intron-3CDS	ENST00000495090	ENST00000206262		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYNE1	chr6	152623004	-	RGS17	chr6	153332897	-
In-frame	ENST00000389960	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000389960	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000389960	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000389960	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
5CDS-intron	ENST00000389960	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000316356	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000316356	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000316356	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000316356	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
5CDS-intron	ENST00000316356	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000528231	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000528231	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000528231	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000528231	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
5CDS-intron	ENST00000528231	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000527523	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000527523	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000527523	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000527523	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000527523	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000524452	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000524452	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000524452	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
Frame-shit	ENST00000524452	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
5CDS-intron	ENST00000524452	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000359152	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000359152	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000359152	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000359152	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000359152	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000354566	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000354566	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000354566	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000354566	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000354566	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525702	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525702	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525702	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525702	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000525702	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525423	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525423	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525423	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525423	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000525423	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000529581	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000529581	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000529581	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000529581	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000529581	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000389958	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000389958	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000389958	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000389958	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000389958	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533892	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533892	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533892	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533892	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000533892	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000528566	ENST00000340353		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000528566	ENST00000532959		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000528566	ENST00000305494		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000528566	ENST00000535167		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
intron-intron	ENST00000528566	ENST00000355734		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	SYTL2	chr11	85468668	-	TMEM135	chr11	87006824	+
In-frame	ENST00000261427	ENST00000257408		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UBE2K	chr4	39776553	+	KLB	chr4	39435830	+
intron-3CDS	ENST00000295963	ENST00000257408		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UBE2K	chr4	39776553	+	KLB	chr4	39435830	+
3UTR-3CDS	ENST00000438068	ENST00000257408		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UBE2K	chr4	39776553	+	KLB	chr4	39435830	+
In-frame	ENST00000503368	ENST00000257408		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UBE2K	chr4	39776553	+	KLB	chr4	39435830	+
In-frame	ENST00000445950	ENST00000257408		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UBE2K	chr4	39776553	+	KLB	chr4	39435830	+
Frame-shit	ENST00000367545	ENST00000366898		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
Frame-shit	ENST00000367545	ENST00000366897		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-intron	ENST00000367545	ENST00000366896		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-intron	ENST00000367545	ENST00000366894		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-5UTR	ENST00000367545	ENST00000338468		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-5UTR	ENST00000367545	ENST00000366892		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
Frame-shit	ENST00000367526	ENST00000366898		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
Frame-shit	ENST00000367526	ENST00000366897		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-intron	ENST00000367526	ENST00000366896		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-intron	ENST00000367526	ENST00000366894		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-5UTR	ENST00000367526	ENST00000338468		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
5CDS-5UTR	ENST00000367526	ENST00000366892		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
intron-3CDS	ENST00000480333	ENST00000366898		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
intron-3CDS	ENST00000480333	ENST00000366897		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
intron-intron	ENST00000480333	ENST00000366896		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
intron-intron	ENST00000480333	ENST00000366894		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
intron-5UTR	ENST00000480333	ENST00000338468		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
intron-5UTR	ENST00000480333	ENST00000366892		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	UTRN	chr6	145051622	+	PARK2	chr6	162683797	-
In-frame	ENST00000395996	ENST00000254624		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000395996	ENST00000334503		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000395996	ENST00000519656		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000395996	ENST00000521940		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000358544	ENST00000254624		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000358544	ENST00000334503		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000358544	ENST00000519656		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000358544	ENST00000521940		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000357162	ENST00000254624		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000357162	ENST00000334503		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000357162	ENST00000519656		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000357162	ENST00000521940		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000355155	ENST00000254624		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000355155	ENST00000334503		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000355155	ENST00000519656		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000355155	ENST00000521940		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
intron-3CDS	ENST00000441350	ENST00000254624		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
intron-3CDS	ENST00000441350	ENST00000334503		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
intron-5UTR	ENST00000441350	ENST00000519656		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
intron-intron	ENST00000441350	ENST00000521940		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
3UTR-3CDS	ENST00000521932	ENST00000254624		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
3UTR-3CDS	ENST00000521932	ENST00000334503		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
3UTR-5UTR	ENST00000521932	ENST00000519656		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
3UTR-intron	ENST00000521932	ENST00000521940		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	VPS13B	chr8	100205285	+	EFR3A	chr8	132952746	+
In-frame	ENST00000430629	ENST00000374005		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000430629	ENST00000399173		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000430629	ENST00000545953		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000430629	ENST00000374004		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
5CDS-intron	ENST00000430629	ENST00000468038		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000536657	ENST00000374005		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000536657	ENST00000399173		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000536657	ENST00000545953		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
In-frame	ENST00000536657	ENST00000374004		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
5CDS-intron	ENST00000536657	ENST00000468038		TCGA	LD	BRCA	TCGA-BH-A1FD-01A	WASF2	chr1	27755271	-	FGR	chr1	27939861	-
5CDS-5UTR	ENST00000558518	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000558518	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558518	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558518	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558518	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000558518	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558518	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000557933	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000557933	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000557933	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000557933	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000557933	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000557933	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000557933	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000455727	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000455727	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000455727	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000455727	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000455727	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000455727	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000455727	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000535915	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000535915	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000535915	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000535915	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000535915	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000535915	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000535915	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000545707	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000545707	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000545707	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000545707	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000545707	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000545707	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000545707	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000558013	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000558013	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558013	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558013	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558013	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-5UTR	ENST00000558013	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
5CDS-intron	ENST00000558013	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-5UTR	ENST00000560628	ENST00000425528		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-5UTR	ENST00000560628	ENST00000441499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-intron	ENST00000560628	ENST00000356861		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-intron	ENST00000560628	ENST00000450764		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-intron	ENST00000560628	ENST00000592287		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-5UTR	ENST00000560628	ENST00000588216		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
intron-intron	ENST00000560628	ENST00000589956		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	LDLR	chr19	11240346	+	TNPO2	chr19	12834751	-
Frame-shit	ENST00000245441	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000245441	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000245441	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000245441	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000245441	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000245441	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
In-frame	ENST00000389868	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000389868	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000389868	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000389868	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000389868	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000389868	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
Frame-shit	ENST00000530997	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000530997	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000530997	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000530997	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000530997	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000530997	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
In-frame	ENST00000382043	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000382043	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000382043	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000382043	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000382043	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000382043	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
Frame-shit	ENST00000382041	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000382041	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000382041	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000382041	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000382041	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000382041	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
In-frame	ENST00000324330	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000324330	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000324330	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000324330	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000324330	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000324330	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
Frame-shit	ENST00000453196	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000453196	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000453196	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000453196	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000453196	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-intron	ENST00000453196	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
intron-3CDS	ENST00000486200	ENST00000298310		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
intron-intron	ENST00000486200	ENST00000382135		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
intron-intron	ENST00000486200	ENST00000545773		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
intron-5UTR	ENST00000486200	ENST00000556925		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
intron-5UTR	ENST00000486200	ENST00000546046		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
intron-intron	ENST00000486200	ENST00000556672		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	NIN	chr14	51273455	-	NEMF	chr14	50292673	-
5CDS-5UTR	ENST00000369037	ENST00000358026		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369037	ENST00000344626		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369037	ENST00000429416		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369037	ENST00000541122		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369037	ENST00000589677		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369037	ENST00000444061		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369037	ENST00000590574		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000369037	ENST00000413806		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000369037	ENST00000450717		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000369037	ENST00000538456		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000358026		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000344626		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000429416		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000541122		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000589677		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000444061		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000453874	ENST00000590574		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000453874	ENST00000413806		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000453874	ENST00000450717		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000453874	ENST00000538456		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000358026		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000344626		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000429416		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000541122		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000589677		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000444061		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-5UTR	ENST00000369031	ENST00000590574		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000369031	ENST00000413806		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000369031	ENST00000450717		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
5CDS-intron	ENST00000369031	ENST00000538456		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PDSS2	chr6	107780194	-	SMARCA4	chr19	11094800	+
Frame-shit	ENST00000299853	ENST00000572173		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000299853	ENST00000572992		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000299853	ENST00000381820		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000299853	ENST00000312499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000299853	ENST00000576027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
Frame-shit	ENST00000564209	ENST00000572173		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000564209	ENST00000572992		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000564209	ENST00000381820		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000564209	ENST00000312499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000564209	ENST00000576027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
Frame-shit	ENST00000418581	ENST00000572173		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000418581	ENST00000572992		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000418581	ENST00000381820		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000418581	ENST00000312499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000418581	ENST00000576027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-3CDS	ENST00000359210	ENST00000572173		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000359210	ENST00000572992		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000359210	ENST00000381820		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000359210	ENST00000312499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000359210	ENST00000576027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-3CDS	ENST00000564256	ENST00000572173		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000564256	ENST00000572992		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000564256	ENST00000381820		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000564256	ENST00000312499		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
intron-intron	ENST00000564256	ENST00000576027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	POLR3E	chr16	22343506	+	RMI2	chr16	11444499	+
5CDS-5UTR	ENST00000522684	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000522684	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000522684	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000522684	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000522684	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000535192	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000535192	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000535192	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000535192	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000535192	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519465	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519465	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519465	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519465	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519465	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000517887	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000517887	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000517887	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000517887	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000517887	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000521059	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000521059	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000521059	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000521059	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000521059	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000395218	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000395218	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000395218	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000395218	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000395218	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000538769	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000538769	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000538769	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000538769	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000538769	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000340930	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000340930	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000340930	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000340930	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000340930	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000519419	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000519419	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000519419	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-5UTR	ENST00000519419	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
5CDS-intron	ENST00000519419	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000430260	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000430260	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000430260	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000430260	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000430260	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519881	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519881	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519881	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519881	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519881	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520892	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520892	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520892	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520892	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520892	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519635	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519635	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519635	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000519635	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000519635	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000517712	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000517712	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000517712	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000517712	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000517712	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000522950	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000522950	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000522950	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000522950	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000522950	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520151	ENST00000491161		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520151	ENST00000376073		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520151	ENST00000340027		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-5UTR	ENST00000520151	ENST00000376072		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000376071		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000497117		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000420556		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000432392		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000457547		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000419728		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000498490		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000433654		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000447248		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000418936		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000420485		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000491762		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000439584		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000415123		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000436623		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000455448		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000459657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000455825		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000435674		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000412603		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000438663		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000495500		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000383478		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000383477		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000383476		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000400241		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000494590		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000430599		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000446756		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000441372		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000453657		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000489751		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000437517		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000436253		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000452296		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-intron	ENST00000520151	ENST00000419086		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	PTK2	chr8	141828376	-	NCR3	chr6	31560691	-
intron-3UTR	ENST00000369022	ENST00000503191		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369022	ENST00000382020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369022	ENST00000506802		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369022	ENST00000509380		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369022	ENST00000503731		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
5CDS-3UTR	ENST00000369020	ENST00000503191		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
5CDS-3UTR	ENST00000369020	ENST00000382020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
5CDS-3UTR	ENST00000369020	ENST00000506802		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
5CDS-3UTR	ENST00000369020	ENST00000509380		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
5CDS-3UTR	ENST00000369020	ENST00000503731		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369025	ENST00000503191		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369025	ENST00000382020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369025	ENST00000506802		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369025	ENST00000509380		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369025	ENST00000503731		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369021	ENST00000503191		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369021	ENST00000382020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369021	ENST00000506802		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369021	ENST00000509380		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000369021	ENST00000503731		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000479803	ENST00000503191		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000479803	ENST00000382020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000479803	ENST00000506802		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000479803	ENST00000509380		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
intron-3UTR	ENST00000479803	ENST00000503731		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SCML4	chr6	108093376	-	TUSC3	chr8	15480589	+
5CDS-5UTR	ENST00000369002	ENST00000369022		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5CDS-5UTR	ENST00000369002	ENST00000369020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5CDS-intron	ENST00000369002	ENST00000369025		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5CDS-intron	ENST00000369002	ENST00000369021		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5CDS-intron	ENST00000369002	ENST00000479803		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5UTR-5UTR	ENST00000460009	ENST00000369022		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5UTR-5UTR	ENST00000460009	ENST00000369020		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5UTR-intron	ENST00000460009	ENST00000369025		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5UTR-intron	ENST00000460009	ENST00000369021		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5UTR-intron	ENST00000460009	ENST00000479803		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	SEC63	chr6	108279090	-	SCML4	chr6	108071017	-
5UTR-5UTR	ENST00000555447	ENST00000453658		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000555447	ENST00000377259		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000555447	ENST00000377245		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000555447	ENST00000348208		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000555447	ENST00000265384		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000555447	ENST00000535702		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000555447	ENST00000539225		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
5UTR-intron	ENST00000555447	ENST00000498204		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000453658		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000377259		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000377245		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000348208		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000265384		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000535702		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000267540	ENST00000539225		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-intron	ENST00000267540	ENST00000498204		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000453658		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000377259		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000377245		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000348208		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000265384		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000535702		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-5UTR	ENST00000556280	ENST00000539225		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
intron-intron	ENST00000556280	ENST00000498204		TCGA	LD	BRCA	TCGA-BH-A1FE-01A	STON2	chr14	81893446	-	TJP2	chr9	71827464	+
In-frame	ENST00000341756	ENST00000454782		TCGA	LD	BRCA	TCGA-BH-A1FG-01A	MPC1	chr6	166796294	-	PXT1	chr6	36359651	-
In-frame	ENST00000360961	ENST00000454782		TCGA	LD	BRCA	TCGA-BH-A1FG-01A	MPC1	chr6	166796294	-	PXT1	chr6	36359651	-
5UTR-3CDS	ENST00000487218	ENST00000454782		TCGA	LD	BRCA	TCGA-BH-A1FG-01A	MPC1	chr6	166796294	-	PXT1	chr6	36359651	-
In-frame	ENST00000403627	ENST00000255559		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
In-frame	ENST00000403627	ENST00000542342		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000403627	ENST00000579988		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000403627	ENST00000579732		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
In-frame	ENST00000405159	ENST00000255559		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
In-frame	ENST00000405159	ENST00000542342		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000405159	ENST00000579988		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000405159	ENST00000579732		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-3CDS	ENST00000583178	ENST00000255559		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-3CDS	ENST00000583178	ENST00000542342		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-intron	ENST00000583178	ENST00000579988		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-intron	ENST00000583178	ENST00000579732		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-3CDS	ENST00000580032	ENST00000255559		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-3CDS	ENST00000580032	ENST00000542342		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-intron	ENST00000580032	ENST00000579988		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-intron	ENST00000580032	ENST00000579732		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
intron-3CDS	ENST00000581110	ENST00000255559		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
intron-3CDS	ENST00000581110	ENST00000542342		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
intron-intron	ENST00000581110	ENST00000579988		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
intron-intron	ENST00000581110	ENST00000579732		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
Frame-shit	ENST00000583024	ENST00000255559		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
Frame-shit	ENST00000583024	ENST00000542342		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000583024	ENST00000579988		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000583024	ENST00000579732		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	FAM104A	chr17	71223304	-	SLC39A11	chr17	71027853	-
5UTR-intron	ENST00000487070	ENST00000295225		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5UTR-intron	ENST00000487070	ENST00000377181		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5UTR-intron	ENST00000487070	ENST00000360990		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5UTR-intron	ENST00000487070	ENST00000468529		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000431828	ENST00000295225		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000431828	ENST00000377181		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000431828	ENST00000360990		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000431828	ENST00000468529		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000599854	ENST00000295225		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000599854	ENST00000377181		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000599854	ENST00000360990		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000599854	ENST00000468529		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000441706	ENST00000295225		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000441706	ENST00000377181		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000441706	ENST00000360990		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000441706	ENST00000468529		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000440133	ENST00000295225		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000440133	ENST00000377181		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000440133	ENST00000360990		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000440133	ENST00000468529		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000435669	ENST00000295225		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000435669	ENST00000377181		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000435669	ENST00000360990		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
5CDS-intron	ENST00000435669	ENST00000468529		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KANSL3	chr2	97285096	-	KCNIP3	chr2	95964431	+
Frame-shit	ENST00000354981	ENST00000378641		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000354981	ENST00000338037		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000354981	ENST00000378637		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5CDS-intron	ENST00000354981	ENST00000494924		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5UTR-3CDS	ENST00000378003	ENST00000378641		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5UTR-3CDS	ENST00000378003	ENST00000338037		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5UTR-3CDS	ENST00000378003	ENST00000378637		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5UTR-intron	ENST00000378003	ENST00000494924		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000355755	ENST00000378641		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000355755	ENST00000338037		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000355755	ENST00000378637		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5CDS-intron	ENST00000355755	ENST00000494924		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000408042	ENST00000378641		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000408042	ENST00000338037		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
Frame-shit	ENST00000408042	ENST00000378637		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5CDS-intron	ENST00000408042	ENST00000494924		TCGA	LD	BRCA	TCGA-BH-A1FH-01A	KIF16B	chr20	16553874	-	PLCB1	chr20	8665579	+
5CDS-5UTR	ENST00000357674	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000357674	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000357674	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000357674	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000314062	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000314062	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000314062	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000314062	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000346964	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000346964	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000346964	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000346964	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000419354	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000419354	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000419354	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000419354	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000452595	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000452595	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000452595	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000452595	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000422288	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000422288	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000422288	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000422288	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000448528	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000448528	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000448528	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000448528	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000443183	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000443183	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000443183	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
intron-5UTR	ENST00000443183	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000450955	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000450955	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000450955	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000450955	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000392382	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000392382	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000392382	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5CDS-5UTR	ENST00000392382	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5UTR-5UTR	ENST00000485409	ENST00000442633		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5UTR-5UTR	ENST00000485409	ENST00000446879		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5UTR-5UTR	ENST00000485409	ENST00000454715		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
5UTR-5UTR	ENST00000485409	ENST00000273695		TCGA	LD	BRCA	TCGA-BH-A1FL-01A	DLG1	chr3	197009550	-	TM4SF19	chr3	196054462	-
In-frame	ENST00000251582	ENST00000196371		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000251582	ENST00000509987		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000251582	ENST00000512084		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000251582	ENST00000510634		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
5CDS-intron	ENST00000251582	ENST00000513081		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000274609	ENST00000196371		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000274609	ENST00000509987		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000274609	ENST00000512084		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
In-frame	ENST00000274609	ENST00000510634		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
5CDS-intron	ENST00000274609	ENST00000513081		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ADAMTS2	chr5	178579143	-	OXCT1	chr5	41739593	-
Frame-shit	ENST00000375687	ENST00000202017		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30956926	+	PDRG1	chr20	30536685	-
Frame-shit	ENST00000542461	ENST00000202017		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30956926	+	PDRG1	chr20	30536685	-
Frame-shit	ENST00000375689	ENST00000202017		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30956926	+	PDRG1	chr20	30536685	-
Frame-shit	ENST00000306058	ENST00000202017		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30956926	+	PDRG1	chr20	30536685	-
3UTR-3CDS	ENST00000470145	ENST00000202017		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ASXL1	chr20	30956926	+	PDRG1	chr20	30536685	-
intron-3CDS	ENST00000303142	ENST00000217423		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	C20orf196	chr20	5737494	+	CST4	chr20	23666614	-
intron-3CDS	ENST00000378979	ENST00000217423		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	C20orf196	chr20	5737494	+	CST4	chr20	23666614	-
In-frame	ENST00000262138	ENST00000335221		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CACNG4	chr17	64961247	+	BPTF	chr17	65887960	+
In-frame	ENST00000262138	ENST00000321892		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CACNG4	chr17	64961247	+	BPTF	chr17	65887960	+
In-frame	ENST00000262138	ENST00000306378		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CACNG4	chr17	64961247	+	BPTF	chr17	65887960	+
In-frame	ENST00000262138	ENST00000424123		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CACNG4	chr17	64961247	+	BPTF	chr17	65887960	+
5CDS-intron	ENST00000262138	ENST00000577770		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CACNG4	chr17	64961247	+	BPTF	chr17	65887960	+
intron-intron	ENST00000557165	ENST00000297641		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
intron-intron	ENST00000557165	ENST00000380701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
intron-intron	ENST00000557165	ENST00000535968		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
intron-3UTR	ENST00000557165	ENST00000486641		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-intron	ENST00000389879	ENST00000297641		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-intron	ENST00000389879	ENST00000380701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-intron	ENST00000389879	ENST00000535968		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-3UTR	ENST00000389879	ENST00000486641		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-intron	ENST00000555049	ENST00000297641		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-intron	ENST00000555049	ENST00000380701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-intron	ENST00000555049	ENST00000535968		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
5CDS-3UTR	ENST00000555049	ENST00000486641		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	CCNK	chr14	99969981	+	CCDC171	chr9	15920268	+
intron-3CDS	ENST00000449098	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000449098	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000449098	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000449098	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000449098	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000449098	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000449098	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000449098	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000320084	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000320084	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000336053	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000336053	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554969	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000554969	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556142	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000556142	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000554455	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000554455	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000430246	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000430246	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553753	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000553753	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555914	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000555914	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555309	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000555309	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556628	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000556628	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000555883	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000555883	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556513	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000556513	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000557201	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000557201	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000553300	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000553300	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000556897	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000556897	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000512701		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000355694		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000380850		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000297615		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000507285		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000507993		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-3CDS	ENST00000420743	ENST00000541445		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
intron-intron	ENST00000420743	ENST00000582994		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	HNRNPC	chr14	21678406	-	TTC39B	chr9	15192693	-
5UTR-5UTR	ENST00000574590	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000575318	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000572904	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000262419	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000432791	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000393476	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
intron-5UTR	ENST00000576248	ENST00000579991		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	KANSL1	chr17	44301037	-	DYNLL2	chr17	56164443	+
3UTR-5UTR	ENST00000429139	ENST00000373511		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-5UTR	ENST00000429139	ENST00000373498		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-5UTR	ENST00000429139	ENST00000350766		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-intron	ENST00000429139	ENST00000373503		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-intron	ENST00000429139	ENST00000394063		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-5UTR	ENST00000429139	ENST00000265960		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-intron	ENST00000429139	ENST00000373497		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-5UTR	ENST00000429139	ENST00000394060		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
3UTR-intron	ENST00000429139	ENST00000483937		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	MIR181A2HG	chr9	127421020	+	MAPKAP1	chr9	128434922	-
5CDS-5UTR	ENST00000580974	ENST00000380069		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	PITPNC1	chr17	65628354	+	EXOC3L4	chr14	103566541	+
5CDS-5UTR	ENST00000299954	ENST00000380069		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	PITPNC1	chr17	65628354	+	EXOC3L4	chr14	103566541	+
5CDS-5UTR	ENST00000335257	ENST00000380069		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	PITPNC1	chr17	65628354	+	EXOC3L4	chr14	103566541	+
5CDS-5UTR	ENST00000581322	ENST00000380069		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	PITPNC1	chr17	65628354	+	EXOC3L4	chr14	103566541	+
In-frame	ENST00000582730	ENST00000330137		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000582730	ENST00000580541		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000582730	ENST00000578105		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000582730	ENST00000583927		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000582730	ENST00000581068		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000582730	ENST00000437036		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000582730	ENST00000583380		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-3CDS	ENST00000581497	ENST00000330137		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-3CDS	ENST00000581497	ENST00000580541		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-3CDS	ENST00000581497	ENST00000578105		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-5UTR	ENST00000581497	ENST00000583927		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-5UTR	ENST00000581497	ENST00000581068		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-5UTR	ENST00000581497	ENST00000437036		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
intron-5UTR	ENST00000581497	ENST00000583380		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000584773	ENST00000330137		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000584773	ENST00000580541		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000584773	ENST00000578105		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000584773	ENST00000583927		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000584773	ENST00000581068		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000584773	ENST00000437036		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000584773	ENST00000583380		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000585096	ENST00000330137		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000585096	ENST00000580541		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000585096	ENST00000578105		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000585096	ENST00000583927		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000585096	ENST00000581068		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000585096	ENST00000437036		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000585096	ENST00000583380		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000258962	ENST00000330137		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
In-frame	ENST00000258962	ENST00000580541		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000258962	ENST00000578105		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000258962	ENST00000583927		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000258962	ENST00000581068		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000258962	ENST00000437036		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000258962	ENST00000583380		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	SRSF1	chr17	56084305	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000512701	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
Frame-shit	ENST00000355694	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
Frame-shit	ENST00000380850	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
Frame-shit	ENST00000297615	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
In-frame	ENST00000507285	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
Frame-shit	ENST00000507993	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
intron-3CDS	ENST00000541445	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
intron-3CDS	ENST00000582994	ENST00000298130		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TTC39B	chr9	15182305	-	SPTSSA	chr14	34904510	-
Frame-shit	ENST00000346141	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000346141	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000346141	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
Frame-shit	ENST00000325752	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000325752	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000325752	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
Frame-shit	ENST00000340993	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000340993	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000340993	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
Frame-shit	ENST00000394239	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000394239	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000394239	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
In-frame	ENST00000592426	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000592426	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000592426	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
In-frame	ENST00000376094	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000376094	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-intron	ENST00000376094	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
intron-3CDS	ENST00000539018	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
intron-intron	ENST00000539018	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
intron-intron	ENST00000539018	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5UTR-3CDS	ENST00000591611	ENST00000184956		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5UTR-intron	ENST00000591611	ENST00000585976		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5UTR-intron	ENST00000591611	ENST00000585712		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	TUBD1	chr17	57968192	-	HEATR6	chr17	58128338	-
5CDS-5UTR	ENST00000262139	ENST00000575291		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	WIPI1	chr17	66429611	-	MRPL45P2	chr17	45534161	-
intron-5UTR	ENST00000589459	ENST00000575291		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	WIPI1	chr17	66429611	-	MRPL45P2	chr17	45534161	-
5CDS-5UTR	ENST00000546360	ENST00000575291		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	WIPI1	chr17	66429611	-	MRPL45P2	chr17	45534161	-
intron-3CDS	ENST00000449886	ENST00000580974		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000449886	ENST00000299954		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000449886	ENST00000335257		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000449886	ENST00000581322		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000373464	ENST00000580974		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000373464	ENST00000299954		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000373464	ENST00000335257		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000373464	ENST00000581322		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000373457	ENST00000580974		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000373457	ENST00000299954		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000373457	ENST00000335257		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000373457	ENST00000581322		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000497064	ENST00000580974		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000497064	ENST00000299954		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000497064	ENST00000335257		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000497064	ENST00000581322		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZBTB43	chr9	129571194	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000558850	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
5UTR-3CDS	ENST00000558850	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
5UTR-3CDS	ENST00000558850	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
5UTR-3CDS	ENST00000558850	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
5UTR-3CDS	ENST00000558850	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000559185	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000559185	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000559185	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000559185	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000559185	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000442396	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000442396	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000442396	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000442396	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000442396	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000262236	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000262236	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000262236	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000262236	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000262236	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000420933	ENST00000526117		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000420933	ENST00000373474		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000420933	ENST00000425646		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000420933	ENST00000355497		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000420933	ENST00000561065		TCGA	LD	BRCA	TCGA-BH-A1FM-01A	ZNF839	chr14	102784003	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000372391	ENST00000299381		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	DLG5	chr10	79685975	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000372391	ENST00000470481		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	DLG5	chr10	79685975	-	ANAPC16	chr10	73990124	+
Frame-shit	ENST00000372388	ENST00000299381		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	DLG5	chr10	79685975	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000372388	ENST00000470481		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	DLG5	chr10	79685975	-	ANAPC16	chr10	73990124	+
intron-3CDS	ENST00000459739	ENST00000299381		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	DLG5	chr10	79685975	-	ANAPC16	chr10	73990124	+
intron-3UTR	ENST00000459739	ENST00000470481		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	DLG5	chr10	79685975	-	ANAPC16	chr10	73990124	+
In-frame	ENST00000307116	ENST00000280772		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000307116	ENST00000373827		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000307116	ENST00000355288		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000307116	ENST00000503366		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000307116	ENST00000510382		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000307116	ENST00000460468		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000373008	ENST00000280772		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000373008	ENST00000373827		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000373008	ENST00000355288		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000373008	ENST00000503366		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000373008	ENST00000510382		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000373008	ENST00000460468		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000263556	ENST00000280772		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000263556	ENST00000373827		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000263556	ENST00000355288		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000263556	ENST00000503366		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000263556	ENST00000510382		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000263556	ENST00000460468		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000412021	ENST00000280772		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000412021	ENST00000373827		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000412021	ENST00000355288		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000412021	ENST00000503366		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000412021	ENST00000510382		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000412021	ENST00000460468		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000440381	ENST00000280772		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000440381	ENST00000373827		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000440381	ENST00000355288		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000440381	ENST00000503366		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000440381	ENST00000510382		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000440381	ENST00000460468		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000394890	ENST00000280772		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
In-frame	ENST00000394890	ENST00000373827		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000394890	ENST00000355288		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000394890	ENST00000503366		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000394890	ENST00000510382		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
5CDS-intron	ENST00000394890	ENST00000460468		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	P4HA1	chr10	74831787	-	ANK3	chr10	62039397	-
Frame-shit	ENST00000442267	ENST00000509479		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	TBC1D9	chr4	141622658	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000442267	ENST00000327122		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	TBC1D9	chr4	141622658	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000442267	ENST00000398940		TCGA	LD	BRCA	TCGA-BH-A1FN-01A	TBC1D9	chr4	141622658	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000361264	ENST00000402558		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
Frame-shit	ENST00000361264	ENST00000379174		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
Frame-shit	ENST00000361264	ENST00000379166		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
Frame-shit	ENST00000361264	ENST00000345050		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000463286	ENST00000402558		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000463286	ENST00000379174		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000463286	ENST00000379166		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000463286	ENST00000345050		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	DCAF12	chr9	34093284	-	KIF24	chr9	34263170	-
Frame-shit	ENST00000581396	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000581396	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000581396	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000581396	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000581396	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000581396	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000379504	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000379504	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000379504	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000379504	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000379504	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000379504	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000318094	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000318094	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000318094	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000318094	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000318094	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000318094	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000395739	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000395739	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000395739	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000395739	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000395739	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000395739	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000535933	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000535933	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000535933	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000535933	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000535933	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000535933	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000540946	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000540946	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000540946	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000540946	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000540946	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000540946	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000542206	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000542206	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000542206	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000542206	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000542206	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000542206	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000478943	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000478943	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000478943	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000478943	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000478943	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5CDS-5UTR	ENST00000478943	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5UTR-3CDS	ENST00000577517	ENST00000395782		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5UTR-3CDS	ENST00000577517	ENST00000395783		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5UTR-3CDS	ENST00000577517	ENST00000435340		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5UTR-3CDS	ENST00000577517	ENST00000255389		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5UTR-3CDS	ENST00000577517	ENST00000395781		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
5UTR-5UTR	ENST00000577517	ENST00000484838		TCGA	LD	BRCA	TCGA-BH-A1FU-01A	TOM1L2	chr17	17769610	-	PEMT	chr17	17415968	-
Frame-shit	ENST00000311172	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A201-01A	FCHSD2	chr11	72613588	-	RNF169	chr11	74500671	+
Frame-shit	ENST00000409314	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A201-01A	FCHSD2	chr11	72613588	-	RNF169	chr11	74500671	+
Frame-shit	ENST00000409418	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A201-01A	FCHSD2	chr11	72613588	-	RNF169	chr11	74500671	+
Frame-shit	ENST00000458644	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A201-01A	FCHSD2	chr11	72613588	-	RNF169	chr11	74500671	+
In-frame	ENST00000409853	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A201-01A	FCHSD2	chr11	72613588	-	RNF169	chr11	74500671	+
intron-3CDS	ENST00000409263	ENST00000299563		TCGA	LD	BRCA	TCGA-BH-A201-01A	FCHSD2	chr11	72613588	-	RNF169	chr11	74500671	+
5CDS-intron	ENST00000310614	ENST00000294309		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000310614	ENST00000542467		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000310614	ENST00000442692		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000535529	ENST00000294309		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000535529	ENST00000542467		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000535529	ENST00000442692		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000411840	ENST00000294309		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000411840	ENST00000542467		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000411840	ENST00000442692		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000398483	ENST00000294309		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000398483	ENST00000542467		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5UTR-intron	ENST00000398483	ENST00000442692		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000542303	ENST00000294309		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000542303	ENST00000542467		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
5CDS-intron	ENST00000542303	ENST00000442692		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
intron-intron	ENST00000314282	ENST00000294309		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
intron-intron	ENST00000314282	ENST00000542467		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
intron-intron	ENST00000314282	ENST00000442692		TCGA	LD	BRCA	TCGA-BH-A201-01A	MRPL48	chr11	73499037	+	TPCN2	chr11	68902903	+
In-frame	ENST00000294064	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000294064	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000294064	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000294064	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
5CDS-intron	ENST00000294064	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000531509	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000531509	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000531509	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000531509	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
5CDS-intron	ENST00000531509	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000544263	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000544263	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000544263	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
Frame-shit	ENST00000544263	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
5CDS-intron	ENST00000544263	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000529024	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000529024	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000529024	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000529024	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-intron	ENST00000529024	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000532963	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000532963	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000532963	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000532963	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
3UTR-intron	ENST00000532963	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000531619	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000531619	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000531619	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000531619	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-intron	ENST00000531619	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000545272	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000545272	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000545272	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
In-frame	ENST00000545272	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
5CDS-intron	ENST00000545272	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000526068	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000526068	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000526068	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000526068	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-intron	ENST00000526068	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000534628	ENST00000518864		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000534628	ENST00000522124		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000534628	ENST00000517473		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-3CDS	ENST00000534628	ENST00000276467		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
intron-intron	ENST00000534628	ENST00000520697		TCGA	LD	BRCA	TCGA-BH-A201-01A	NEU3	chr11	74716670	+	SNTG1	chr8	51503439	+
5UTR-5UTR	ENST00000356341	ENST00000409709		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000356341	ENST00000409893		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000356341	ENST00000458637		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000356341	ENST00000409619		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-intron	ENST00000356341	ENST00000605744		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000530617	ENST00000409709		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000530617	ENST00000409893		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000530617	ENST00000458637		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000530617	ENST00000409619		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-intron	ENST00000530617	ENST00000605744		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000278568	ENST00000409709		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000278568	ENST00000409893		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000278568	ENST00000458637		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-5UTR	ENST00000278568	ENST00000409619		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
5UTR-intron	ENST00000278568	ENST00000605744		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000528203	ENST00000409709		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000528203	ENST00000409893		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000528203	ENST00000458637		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000528203	ENST00000409619		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-intron	ENST00000528203	ENST00000605744		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525542	ENST00000409709		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525542	ENST00000409893		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525542	ENST00000458637		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525542	ENST00000409619		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
intron-intron	ENST00000525542	ENST00000605744		TCGA	LD	BRCA	TCGA-BH-A201-01A	PAK1	chr11	77184597	-	MYO7A	chr11	76841635	+
Frame-shit	ENST00000298281	ENST00000398645		TCGA	LD	BRCA	TCGA-BH-A201-01A	PCF11	chr11	82868673	+	KDM2A	chr11	66974981	+
Frame-shit	ENST00000298281	ENST00000529006		TCGA	LD	BRCA	TCGA-BH-A201-01A	PCF11	chr11	82868673	+	KDM2A	chr11	66974981	+
5CDS-intron	ENST00000298281	ENST00000526258		TCGA	LD	BRCA	TCGA-BH-A201-01A	PCF11	chr11	82868673	+	KDM2A	chr11	66974981	+
5CDS-intron	ENST00000298281	ENST00000308783		TCGA	LD	BRCA	TCGA-BH-A201-01A	PCF11	chr11	82868673	+	KDM2A	chr11	66974981	+
5CDS-intron	ENST00000298281	ENST00000530342		TCGA	LD	BRCA	TCGA-BH-A201-01A	PCF11	chr11	82868673	+	KDM2A	chr11	66974981	+
5CDS-5UTR	ENST00000389960	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000316356	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000528231	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000527523	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000524452	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000359152	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000354566	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000525702	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000525423	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000529581	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000389958	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000533892	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
intron-5UTR	ENST00000528566	ENST00000306960		TCGA	LD	BRCA	TCGA-BH-A201-01A	SYTL2	chr11	85411558	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000406337	ENST00000350896		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000406337	ENST00000262101		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000406337	ENST00000445506		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000406337	ENST00000355282		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-intron	ENST00000406337	ENST00000518343		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000406337	ENST00000381998		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000406337	ENST00000536385		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000265713	ENST00000350896		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000265713	ENST00000262101		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000265713	ENST00000445506		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000265713	ENST00000355282		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-intron	ENST00000265713	ENST00000518343		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000265713	ENST00000381998		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000265713	ENST00000536385		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000396930	ENST00000350896		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000396930	ENST00000262101		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000396930	ENST00000445506		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000396930	ENST00000355282		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-intron	ENST00000396930	ENST00000518343		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000396930	ENST00000381998		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000396930	ENST00000536385		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000485568	ENST00000350896		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000485568	ENST00000262101		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000485568	ENST00000445506		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000485568	ENST00000355282		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-intron	ENST00000485568	ENST00000518343		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000485568	ENST00000381998		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
5CDS-5UTR	ENST00000485568	ENST00000536385		TCGA	LD	BRCA	TCGA-BH-A202-01A	KAT6A	chr8	41905896	-	MSR1	chr8	16035501	-
In-frame	ENST00000315392	ENST00000333461		TCGA	LD	BRCA	TCGA-BH-A202-01A	PLXDC1	chr17	37307615	-	STAC2	chr17	37374426	-
intron-3CDS	ENST00000493200	ENST00000333461		TCGA	LD	BRCA	TCGA-BH-A202-01A	PLXDC1	chr17	37307615	-	STAC2	chr17	37374426	-
intron-3CDS	ENST00000539608	ENST00000333461		TCGA	LD	BRCA	TCGA-BH-A202-01A	PLXDC1	chr17	37307615	-	STAC2	chr17	37374426	-
intron-3CDS	ENST00000444911	ENST00000333461		TCGA	LD	BRCA	TCGA-BH-A202-01A	PLXDC1	chr17	37307615	-	STAC2	chr17	37374426	-
In-frame	ENST00000394316	ENST00000333461		TCGA	LD	BRCA	TCGA-BH-A202-01A	PLXDC1	chr17	37307615	-	STAC2	chr17	37374426	-
Frame-shit	ENST00000357559	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000357559	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000357559	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5CDS-intron	ENST00000357559	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-3CDS	ENST00000305586	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-3CDS	ENST00000305586	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-3CDS	ENST00000305586	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-intron	ENST00000305586	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000491674	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000491674	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000491674	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5CDS-intron	ENST00000491674	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000491062	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000491062	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000491062	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5CDS-intron	ENST00000491062	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-3CDS	ENST00000468861	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-3CDS	ENST00000468861	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-3CDS	ENST00000468861	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5UTR-intron	ENST00000468861	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000445140	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000445140	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
Frame-shit	ENST00000445140	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5CDS-intron	ENST00000445140	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
intron-3CDS	ENST00000480918	ENST00000338008		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
intron-3CDS	ENST00000480918	ENST00000510158		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
intron-3CDS	ENST00000480918	ENST00000505560		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
intron-intron	ENST00000480918	ENST00000512442		TCGA	LD	BRCA	TCGA-BH-A203-01A	FXR1	chr3	180630524	+	ZFYVE16	chr5	79768580	+
5CDS-intron	ENST00000253462	ENST00000253457		TCGA	LD	BRCA	TCGA-BH-A203-01A	GINS2	chr16	85715188	-	EMC8	chr16	85805497	-
5CDS-intron	ENST00000253462	ENST00000435200		TCGA	LD	BRCA	TCGA-BH-A203-01A	GINS2	chr16	85715188	-	EMC8	chr16	85805497	-
5CDS-5UTR	ENST00000251808	ENST00000254976		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
5CDS-5UTR	ENST00000251808	ENST00000304886		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
5CDS-intron	ENST00000251808	ENST00000495883		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
5CDS-5UTR	ENST00000395927	ENST00000254976		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
5CDS-5UTR	ENST00000395927	ENST00000304886		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
5CDS-intron	ENST00000395927	ENST00000495883		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
intron-5UTR	ENST00000517674	ENST00000254976		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
intron-5UTR	ENST00000517674	ENST00000304886		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
intron-intron	ENST00000517674	ENST00000495883		TCGA	LD	BRCA	TCGA-BH-A203-01A	GRHL2	chr8	102611379	+	SNAP25	chr20	10256077	+
Frame-shit	ENST00000309092	ENST00000369111		TCGA	LD	BRCA	TCGA-BH-A203-01A	MRPS21	chr1	150266869	+	CA14	chr1	150236993	+
Frame-shit	ENST00000369084	ENST00000369111		TCGA	LD	BRCA	TCGA-BH-A203-01A	MRPS21	chr1	150266869	+	CA14	chr1	150236993	+
5CDS-5UTR	ENST00000378641	ENST00000473131		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000378641	ENST00000203001		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000378641	ENST00000453074		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000338037	ENST00000473131		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000338037	ENST00000203001		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000338037	ENST00000453074		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000378637	ENST00000473131		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000378637	ENST00000203001		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
5CDS-5UTR	ENST00000378637	ENST00000453074		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
3UTR-5UTR	ENST00000494924	ENST00000473131		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
3UTR-5UTR	ENST00000494924	ENST00000203001		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
3UTR-5UTR	ENST00000494924	ENST00000453074		TCGA	LD	BRCA	TCGA-BH-A203-01A	PLCB1	chr20	8709821	+	TRMT6	chr20	5921785	-
3UTR-3CDS	ENST00000330165	ENST00000400962		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-3CDS	ENST00000330165	ENST00000324852		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-3CDS	ENST00000330165	ENST00000450945		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-5UTR	ENST00000330165	ENST00000486178		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-3CDS	ENST00000369307	ENST00000400962		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-3CDS	ENST00000369307	ENST00000324852		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-3CDS	ENST00000369307	ENST00000450945		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
3UTR-5UTR	ENST00000369307	ENST00000486178		TCGA	LD	BRCA	TCGA-BH-A203-01A	RBM8A	chr1	145509230	-	FCAMR	chr1	207133142	-
Frame-shit	ENST00000395715	ENST00000313382		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000395715	ENST00000369354		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000395715	ENST00000369356		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000395715	ENST00000530740		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000395715	ENST00000369359		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000395715	ENST00000369351		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000395715	ENST00000369349		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000369347		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000369348		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000524974		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000313431		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000529945		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000479408		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000493130		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000478649		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000395715	ENST00000369345		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000313382		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000369354		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000369356		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000530740		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000369359		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000369351		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000220888	ENST00000369349		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000369347		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000369348		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000524974		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000313431		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000529945		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000479408		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000493130		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000478649		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000220888	ENST00000369345		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000313382		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000369354		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000369356		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000530740		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000369359		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000369351		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000519076	ENST00000369349		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000369347		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000369348		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000524974		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000313431		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000529945		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000479408		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000493130		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000478649		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519076	ENST00000369345		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000313382		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000369354		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000369356		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000530740		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000369359		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000369351		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
In-frame	ENST00000520276	ENST00000369349		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000369347		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000369348		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000524974		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000313431		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000529945		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000479408		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000493130		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000478649		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000520276	ENST00000369345		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000313382		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000369354		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000369356		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000530740		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000369359		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000369351		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000519674	ENST00000369349		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000369347		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000369348		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000524974		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000313431		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000529945		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000479408		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000493130		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000478649		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
5CDS-intron	ENST00000519674	ENST00000369345		TCGA	LD	BRCA	TCGA-BH-A203-01A	TRPS1	chr8	116599228	-	PDE4DIP	chr1	144915639	+
Frame-shit	ENST00000360839	ENST00000398610		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA10	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000398610		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA10	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000398610		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA10	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000398610		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA10	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000398610		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA10	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000398610		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA10	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000398587		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000518882		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000398587		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000518882		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000398587		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000518882		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000398587		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000518882		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000398587		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000518882		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000398587		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000518882		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA11	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000252085		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA12	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000252085		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA12	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000252085		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA12	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000252085		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA12	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000252085		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA12	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000252085		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA12	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000398604		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA8	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000398604		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA8	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000398604		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA8	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000398604		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA8	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000398604		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA8	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000398604		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA8	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000573521		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA9	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000573521		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA9	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000573521		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA9	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000573521		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA9	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000573521		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA9	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000573521		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGA9	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000520790		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB6	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000520790		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB6	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000520790		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB6	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000520790		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB6	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000520790		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB6	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000520790		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB6	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000398594		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB7	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000398594		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB7	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000398594		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB7	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000398594		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB7	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000398594		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB7	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000398594		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGB7	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000308177		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC3	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000308177		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC3	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000308177		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC3	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000308177		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC3	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000308177		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC3	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000308177		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC3	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000306593		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC4	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000306593		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC4	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000306593		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC4	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000306593		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC4	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000306593		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC4	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000306593		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC4	chr5	140884960	+
Frame-shit	ENST00000360839	ENST00000252087		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC5	chr5	140884960	+
Frame-shit	ENST00000297183	ENST00000252087		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC5	chr5	140884960	+
intron-3CDS	ENST00000394723	ENST00000252087		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC5	chr5	140884960	+
intron-3CDS	ENST00000394722	ENST00000252087		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC5	chr5	140884960	+
intron-3CDS	ENST00000462121	ENST00000252087		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC5	chr5	140884960	+
intron-3CDS	ENST00000544120	ENST00000252087		TCGA	LD	BRCA	TCGA-BH-A209-01A	ANKHD1	chr5	139866645	+	PCDHGC5	chr5	140884960	+
intron-3CDS	ENST00000446165	ENST00000425967		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000397091		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000447712		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000341462		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000532791		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000397113		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000356207		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000335922		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000326324		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000397103		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000446165	ENST00000397108		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-intron	ENST00000446165	ENST00000496629		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000425967		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000397091		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000447712		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000341462		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000532791		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000397113		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000356207		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000335922		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000326324		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000397103		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000343325	ENST00000397108		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-intron	ENST00000343325	ENST00000496629		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000425967		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000397091		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000447712		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000341462		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000532791		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000397113		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000356207		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000335922		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000326324		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000397103		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000458122	ENST00000397108		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-intron	ENST00000458122	ENST00000496629		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000425967		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000397091		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000447712		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000341462		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000532791		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000397113		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000356207		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000335922		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000326324		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000397103		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000540038	ENST00000397108		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-intron	ENST00000540038	ENST00000496629		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000425967		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000397091		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000447712		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000341462		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000532791		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000397113		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000356207		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000335922		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000326324		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000397103		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-3CDS	ENST00000498389	ENST00000397108		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
intron-intron	ENST00000498389	ENST00000496629		TCGA	LD	BRCA	TCGA-BH-A209-01A	ZNF791	chr19	12730134	+	FGFR1	chr8	38275874	-
5UTR-3CDS	ENST00000227525	ENST00000347785		TCGA	LD	BRCA	TCGA-BH-A28Q-01A	TMEM109	chr11	60681740	+	CD5	chr11	60882528	+
intron-3CDS	ENST00000536171	ENST00000347785		TCGA	LD	BRCA	TCGA-BH-A28Q-01A	TMEM109	chr11	60681740	+	CD5	chr11	60882528	+
intron-3CDS	ENST00000540280	ENST00000347785		TCGA	LD	BRCA	TCGA-BH-A28Q-01A	TMEM109	chr11	60681740	+	CD5	chr11	60882528	+
In-frame	ENST00000361048	ENST00000280154		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
In-frame	ENST00000361048	ENST00000393104		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
5CDS-3UTR	ENST00000361048	ENST00000481353		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
In-frame	ENST00000369312	ENST00000280154		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
In-frame	ENST00000369312	ENST00000393104		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
5CDS-3UTR	ENST00000369312	ENST00000481353		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
In-frame	ENST00000369310	ENST00000280154		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
In-frame	ENST00000369310	ENST00000393104		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
5CDS-3UTR	ENST00000369310	ENST00000481353		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
intron-3CDS	ENST00000369309	ENST00000280154		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
intron-3CDS	ENST00000369309	ENST00000393104		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
intron-3UTR	ENST00000369309	ENST00000481353		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
intron-3CDS	ENST00000354462	ENST00000280154		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
intron-3CDS	ENST00000354462	ENST00000393104		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
intron-3UTR	ENST00000354462	ENST00000481353		TCGA	LD	BRCA	TCGA-BH-A42U-01A	PLEKHS1	chr10	115529659	+	PDCD4	chr10	112645011	+
5CDS-5UTR	ENST00000595661	ENST00000422090		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000595661	ENST00000413454		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000595661	ENST00000352066		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000595661	ENST00000597029		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000595661	ENST00000597723		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000595661	ENST00000596217		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000595661	ENST00000600583		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000422090		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000413454		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000352066		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000597029		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000597723		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000596217		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000391821	ENST00000600583		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000422090		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000413454		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000352066		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000597029		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000597723		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000596217		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000270617	ENST00000600583		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000422090		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000413454		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000352066		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000597029		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000597723		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000596217		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-5UTR	ENST00000445728	ENST00000600583		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000422090		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000413454		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000352066		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000597029		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000597723		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000596217		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
5CDS-5UTR	ENST00000601364	ENST00000600583		TCGA	LD	BRCA	TCGA-BH-A42V-01A	ZNF473	chr19	50534348	+	NUP62	chr19	50413141	-
intron-intron	ENST00000381470	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000381470	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000381470	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000381470	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000381470	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000381470	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000381470	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000432128	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000432128	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000432128	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000432128	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000432128	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000432128	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000432128	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000443491	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000443491	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000443491	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000443491	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000443491	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000443491	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000443491	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000517600	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000517600	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000517600	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000517600	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000517600	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000517600	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000517600	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523782	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523782	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523782	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523782	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523782	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523782	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000523782	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000265800	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000265800	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000265800	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000265800	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000265800	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000265800	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000265800	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000415253	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000415253	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000415253	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000415253	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000415253	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000415253	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000415253	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000358242	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000358242	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000358242	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000358242	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000358242	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000358242	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000358242	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523266	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523266	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523266	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523266	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523266	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000523266	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000523266	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000519907	ENST00000318561		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000519907	ENST00000521315		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000519907	ENST00000437090		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000519907	ENST00000520605		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000519907	ENST00000522109		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-intron	ENST00000519907	ENST00000524255		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
intron-3UTR	ENST00000519907	ENST00000522880		TCGA	LD	BRCA	TCGA-BH-A5IZ-01A	DMTN	chr8	21906735	+	SFTPC	chr8	22016988	+
5CDS-5UTR	ENST00000344773	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000344773	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000344773	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000344773	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-intron	ENST00000344773	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379624	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379624	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379624	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379624	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-intron	ENST00000379624	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000342045	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000342045	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000342045	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000342045	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-intron	ENST00000342045	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379632	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379632	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379632	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000379632	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-intron	ENST00000379632	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000361704	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000361704	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000361704	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-5UTR	ENST00000361704	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-intron	ENST00000361704	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
3UTR-5UTR	ENST00000603461	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
3UTR-5UTR	ENST00000603461	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
3UTR-5UTR	ENST00000603461	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
3UTR-5UTR	ENST00000603461	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
3UTR-intron	ENST00000603461	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	BRE	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000379666	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000379666	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000379666	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000379666	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-intron	ENST00000379666	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000296102	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000296102	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000296102	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000296102	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-intron	ENST00000296102	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000483992	ENST00000317799		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000483992	ENST00000405867		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000483992	ENST00000537713		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-5UTR	ENST00000483992	ENST00000545822		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
intron-intron	ENST00000483992	ENST00000494615		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	MRPL33	chr2	28210954	+	HADHB	chr2	26477115	+
5CDS-3UTR	ENST00000406961	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000406961	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000406961	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
intron-3UTR	ENST00000469850	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
intron-3UTR	ENST00000469850	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
intron-3UTR	ENST00000469850	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000405141	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000405141	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000405141	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000407230	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000407230	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000407230	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000538539	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000538539	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000538539	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000288599	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000288599	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000288599	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000348332	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000348332	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000348332	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000395856	ENST00000475662		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000395856	ENST00000335756		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
5CDS-3UTR	ENST00000395856	ENST00000233505		TCGA	LD	BRCA	TCGA-BH-A5J0-01A	NCOA1	chr2	24905997	+	CENPA	chr2	27014999	+
intron-3CDS	ENST00000231061	ENST00000304636		TCGA	LD	BRCA	TCGA-BH-A6R9-01A	SPARC	chr5	151045934	-	COL3A1	chr2	189852807	+
intron-3CDS	ENST00000231061	ENST00000317840		TCGA	LD	BRCA	TCGA-BH-A6R9-01A	SPARC	chr5	151045934	-	COL3A1	chr2	189852807	+
intron-3CDS	ENST00000537849	ENST00000304636		TCGA	LD	BRCA	TCGA-BH-A6R9-01A	SPARC	chr5	151045934	-	COL3A1	chr2	189852807	+
intron-3CDS	ENST00000537849	ENST00000317840		TCGA	LD	BRCA	TCGA-BH-A6R9-01A	SPARC	chr5	151045934	-	COL3A1	chr2	189852807	+
5CDS-5UTR	ENST00000215941	ENST00000403305		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000215941	ENST00000249079		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000215941	ENST00000403026		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-5UTR	ENST00000498417	ENST00000403305		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-5UTR	ENST00000498417	ENST00000249079		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-5UTR	ENST00000498417	ENST00000403026		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000406423	ENST00000403305		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000406423	ENST00000249079		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000406423	ENST00000403026		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-5UTR	ENST00000609454	ENST00000403305		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-5UTR	ENST00000609454	ENST00000249079		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-5UTR	ENST00000609454	ENST00000403026		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000411961	ENST00000403305		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000411961	ENST00000249079		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
5CDS-5UTR	ENST00000411961	ENST00000403026		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ANKRD54	chr22	38234507	-	C22orf23	chr22	38349165	-
intron-3CDS	ENST00000366603	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000366603	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000366603	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-intron	ENST00000366603	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000264183	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000264183	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000264183	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-intron	ENST00000264183	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000349213	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000349213	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000349213	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-intron	ENST00000349213	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000494543	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000494543	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000494543	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
intron-intron	ENST00000494543	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	ARID4B	chr1	235311719	-	CARD10	chr22	37900776	-
In-frame	ENST00000328090	ENST00000355029		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
Frame-shit	ENST00000328090	ENST00000542715		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
In-frame	ENST00000328090	ENST00000380359		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
5CDS-intron	ENST00000328090	ENST00000484741		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
intron-3CDS	ENST00000463468	ENST00000355029		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
intron-3CDS	ENST00000463468	ENST00000542715		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
intron-3CDS	ENST00000463468	ENST00000380359		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
intron-intron	ENST00000463468	ENST00000484741		TCGA	LD	BRCA	TCGA-C8-A12K-01A	FAM208B	chr10	5803434	+	NET1	chr10	5498551	+
In-frame	ENST00000520777	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
In-frame	ENST00000360522	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
In-frame	ENST00000378710	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
In-frame	ENST00000357210	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
In-frame	ENST00000355826	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
In-frame	ENST00000518681	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
In-frame	ENST00000505820	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
5UTR-3CDS	ENST00000378712	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
5UTR-3CDS	ENST00000504599	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
intron-3CDS	ENST00000378708	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
intron-3CDS	ENST00000512004	ENST00000416247		TCGA	LD	BRCA	TCGA-C8-A12K-01A	MIB2	chr1	1551994	+	SMIM13	chr6	11134636	+
5CDS-3UTR	ENST00000391875	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000391875	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000391875	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000391875	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000281701	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000281701	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000281701	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000281701	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000469075	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000469075	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000469075	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000469075	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-3UTR	ENST00000482491	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-3UTR	ENST00000482491	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-intron	ENST00000482491	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-intron	ENST00000482491	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-3UTR	ENST00000340871	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-3UTR	ENST00000340871	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-intron	ENST00000340871	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-intron	ENST00000340871	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000361463	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-3UTR	ENST00000361463	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000361463	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
5CDS-intron	ENST00000361463	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-3UTR	ENST00000468673	ENST00000414423		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-3UTR	ENST00000468673	ENST00000295024		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-intron	ENST00000468673	ENST00000366852		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
intron-intron	ENST00000468673	ENST00000479727		TCGA	LD	BRCA	TCGA-C8-A12K-01A	NVL	chr1	224499502	-	WDR26	chr1	224574204	-
In-frame	ENST00000360540	ENST00000276480		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
5CDS-intron	ENST00000360540	ENST00000522102		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
intron-3CDS	ENST00000544451	ENST00000276480		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
intron-intron	ENST00000544451	ENST00000522102		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
intron-3CDS	ENST00000519559	ENST00000276480		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
intron-intron	ENST00000519559	ENST00000522102		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
Frame-shit	ENST00000522514	ENST00000276480		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
5CDS-intron	ENST00000522514	ENST00000522102		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
intron-3CDS	ENST00000521344	ENST00000276480		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
intron-intron	ENST00000521344	ENST00000522102		TCGA	LD	BRCA	TCGA-C8-A12K-01A	PCMTD1	chr8	52773405	-	ST18	chr8	53062537	-
Frame-shit	ENST00000408888	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
Frame-shit	ENST00000408888	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
Frame-shit	ENST00000408888	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
5CDS-intron	ENST00000408888	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
Frame-shit	ENST00000366606	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
Frame-shit	ENST00000366606	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
Frame-shit	ENST00000366606	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
5CDS-intron	ENST00000366606	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000495224	ENST00000403299		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000495224	ENST00000406271		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
intron-3CDS	ENST00000495224	ENST00000251973		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
intron-intron	ENST00000495224	ENST00000494166		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RBM34	chr1	235311719	-	CARD10	chr22	37900776	-
5UTR-3CDS	ENST00000351018	ENST00000324932		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
5UTR-3CDS	ENST00000351018	ENST00000359171		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
5UTR-3CDS	ENST00000351018	ENST00000355260		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
5UTR-3CDS	ENST00000351018	ENST00000397004		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
5UTR-3CDS	ENST00000351018	ENST00000397007		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
5UTR-intron	ENST00000351018	ENST00000488828		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396979	ENST00000324932		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396979	ENST00000359171		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396979	ENST00000355260		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396979	ENST00000397004		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396979	ENST00000397007		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-intron	ENST00000396979	ENST00000488828		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396978	ENST00000324932		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396978	ENST00000359171		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396978	ENST00000355260		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396978	ENST00000397004		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000396978	ENST00000397007		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-intron	ENST00000396978	ENST00000488828		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533217	ENST00000324932		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533217	ENST00000359171		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533217	ENST00000355260		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533217	ENST00000397004		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533217	ENST00000397007		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-intron	ENST00000533217	ENST00000488828		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RHOG	chr11	3862124	-	NUP98	chr11	3756554	-
intron-intron	ENST00000470422	ENST00000327155		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000470422	ENST00000399722		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000470422	ENST00000399725		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000470422	ENST00000360790		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000470422	ENST00000581687		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000246043	ENST00000327155		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000246043	ENST00000399722		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000246043	ENST00000399725		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000246043	ENST00000360790		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000246043	ENST00000581687		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377813	ENST00000327155		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377813	ENST00000399722		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377813	ENST00000399725		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377813	ENST00000360790		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377813	ENST00000581687		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377807	ENST00000327155		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377807	ENST00000399722		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377807	ENST00000399725		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377807	ENST00000360790		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000377807	ENST00000581687		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000360807	ENST00000327155		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000360807	ENST00000399722		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000360807	ENST00000399725		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000360807	ENST00000360790		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
intron-intron	ENST00000360807	ENST00000581687		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000455029	ENST00000327155		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000455029	ENST00000399722		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000455029	ENST00000399725		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000455029	ENST00000360790		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
5UTR-intron	ENST00000455029	ENST00000581687		TCGA	LD	BRCA	TCGA-C8-A12K-01A	RRBP1	chr20	17660644	-	RBBP8	chr18	20491563	+
Frame-shit	ENST00000416247	ENST00000520777		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000416247	ENST00000360522		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000416247	ENST00000378710		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000416247	ENST00000357210		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000416247	ENST00000355826		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000416247	ENST00000518681		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000416247	ENST00000505820		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
5CDS-5UTR	ENST00000416247	ENST00000378712		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
5CDS-5UTR	ENST00000416247	ENST00000504599		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
5CDS-intron	ENST00000416247	ENST00000378708		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
5CDS-intron	ENST00000416247	ENST00000512004		TCGA	LD	BRCA	TCGA-C8-A12K-01A	SMIM13	chr6	11094622	+	MIB2	chr1	1551888	+
Frame-shit	ENST00000373874	ENST00000373913		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373874	ENST00000401952		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373874	ENST00000373907		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373874	ENST00000339266		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
5CDS-intron	ENST00000373874	ENST00000475894		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
5CDS-intron	ENST00000373874	ENST00000340491		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373872	ENST00000373913		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373872	ENST00000401952		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373872	ENST00000373907		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
Frame-shit	ENST00000373872	ENST00000339266		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
5CDS-intron	ENST00000373872	ENST00000475894		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
5CDS-intron	ENST00000373872	ENST00000340491		TCGA	LD	BRCA	TCGA-C8-A12K-01A	TGIF2	chr20	35207369	+	DLGAP4	chr20	35068157	+
In-frame	ENST00000354216	ENST00000374515		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
In-frame	ENST00000354216	ENST00000374517		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
5CDS-intron	ENST00000354216	ENST00000487892		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
In-frame	ENST00000369892	ENST00000374515		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
In-frame	ENST00000369892	ENST00000374517		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
5CDS-intron	ENST00000369892	ENST00000487892		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
In-frame	ENST00000358711	ENST00000374515		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
In-frame	ENST00000358711	ENST00000374517		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
5CDS-intron	ENST00000358711	ENST00000487892		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
intron-3CDS	ENST00000369908	ENST00000374515		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
intron-3CDS	ENST00000369908	ENST00000374517		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
intron-intron	ENST00000369908	ENST00000487892		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
intron-3CDS	ENST00000492660	ENST00000374515		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
intron-3CDS	ENST00000492660	ENST00000374517		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
intron-intron	ENST00000492660	ENST00000487892		TCGA	LD	BRCA	TCGA-C8-A12K-01A	UCKL1	chr20	62587613	-	TXN	chr9	113013742	-
Frame-shit	ENST00000373233	ENST00000316738		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
Frame-shit	ENST00000373233	ENST00000555872		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
In-frame	ENST00000373233	ENST00000556609		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373233	ENST00000267544		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373233	ENST00000550103		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373233	ENST00000538485		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373233	ENST00000556005		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
Frame-shit	ENST00000309279	ENST00000316738		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
Frame-shit	ENST00000309279	ENST00000555872		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
In-frame	ENST00000309279	ENST00000556609		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000309279	ENST00000267544		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000309279	ENST00000550103		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000309279	ENST00000538485		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000309279	ENST00000556005		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
Frame-shit	ENST00000373222	ENST00000316738		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
Frame-shit	ENST00000373222	ENST00000555872		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
Frame-shit	ENST00000373222	ENST00000556609		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373222	ENST00000267544		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373222	ENST00000550103		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373222	ENST00000538485		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5CDS-intron	ENST00000373222	ENST00000556005		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-3CDS	ENST00000480022	ENST00000316738		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-3CDS	ENST00000480022	ENST00000555872		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-3CDS	ENST00000480022	ENST00000556609		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-intron	ENST00000480022	ENST00000267544		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-intron	ENST00000480022	ENST00000550103		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-intron	ENST00000480022	ENST00000538485		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
intron-intron	ENST00000480022	ENST00000556005		TCGA	LD	BRCA	TCGA-C8-A12L-01A	CHD6	chr20	40161689	-	EFCAB11	chr14	90263668	-
5UTR-3CDS	ENST00000361525	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000361525	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000361525	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-intron	ENST00000361525	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366940	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366940	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366940	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000366940	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000361395	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000361395	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000361395	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-intron	ENST00000361395	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366938	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366938	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366938	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000366938	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000359162	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000359162	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000359162	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000359162	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000493603	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000493603	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000493603	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-intron	ENST00000493603	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000463665	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000463665	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000463665	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-intron	ENST00000463665	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000487276	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000487276	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-3CDS	ENST00000487276	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
5UTR-intron	ENST00000487276	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000493748	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000493748	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000493748	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000493748	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000471371	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000471371	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000471371	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000471371	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000391890	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000391890	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000391890	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000391890	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366937	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366937	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000366937	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000366937	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000408911	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000408911	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000408911	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000408911	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000360012	ENST00000545172		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000360012	ENST00000367851		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000360012	ENST00000367848		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-intron	ENST00000360012	ENST00000476818		TCGA	LD	BRCA	TCGA-C8-A12L-01A	ESRRG	chr1	217038403	-	ADCY10	chr1	167794093	-
intron-3CDS	ENST00000446823	ENST00000404826		TCGA	LD	BRCA	TCGA-C8-A12L-01A	FOXK1	chr7	4722499	+	SDK1	chr7	4247731	+
intron-3CDS	ENST00000446823	ENST00000389531		TCGA	LD	BRCA	TCGA-C8-A12L-01A	FOXK1	chr7	4722499	+	SDK1	chr7	4247731	+
intron-intron	ENST00000446823	ENST00000466611		TCGA	LD	BRCA	TCGA-C8-A12L-01A	FOXK1	chr7	4722499	+	SDK1	chr7	4247731	+
Frame-shit	ENST00000328914	ENST00000404826		TCGA	LD	BRCA	TCGA-C8-A12L-01A	FOXK1	chr7	4722499	+	SDK1	chr7	4247731	+
Frame-shit	ENST00000328914	ENST00000389531		TCGA	LD	BRCA	TCGA-C8-A12L-01A	FOXK1	chr7	4722499	+	SDK1	chr7	4247731	+
5CDS-intron	ENST00000328914	ENST00000466611		TCGA	LD	BRCA	TCGA-C8-A12L-01A	FOXK1	chr7	4722499	+	SDK1	chr7	4247731	+
In-frame	ENST00000369483	ENST00000207157		TCGA	LD	BRCA	TCGA-C8-A12L-01A	IGSF3	chr1	117142563	-	TBX15	chr1	119456802	-
In-frame	ENST00000369483	ENST00000369429		TCGA	LD	BRCA	TCGA-C8-A12L-01A	IGSF3	chr1	117142563	-	TBX15	chr1	119456802	-
In-frame	ENST00000369486	ENST00000207157		TCGA	LD	BRCA	TCGA-C8-A12L-01A	IGSF3	chr1	117142563	-	TBX15	chr1	119456802	-
In-frame	ENST00000369486	ENST00000369429		TCGA	LD	BRCA	TCGA-C8-A12L-01A	IGSF3	chr1	117142563	-	TBX15	chr1	119456802	-
Frame-shit	ENST00000318837	ENST00000207157		TCGA	LD	BRCA	TCGA-C8-A12L-01A	IGSF3	chr1	117142563	-	TBX15	chr1	119456802	-
Frame-shit	ENST00000318837	ENST00000369429		TCGA	LD	BRCA	TCGA-C8-A12L-01A	IGSF3	chr1	117142563	-	TBX15	chr1	119456802	-
Frame-shit	ENST00000360614	ENST00000397981		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000360614	ENST00000545011		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000360614	ENST00000397983		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000360614	ENST00000397979		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
In-frame	ENST00000585374	ENST00000397981		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
In-frame	ENST00000585374	ENST00000545011		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
In-frame	ENST00000585374	ENST00000397983		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
In-frame	ENST00000585374	ENST00000397979		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000593119	ENST00000397981		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000593119	ENST00000545011		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000593119	ENST00000397983		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000593119	ENST00000397979		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
intron-3CDS	ENST00000540670	ENST00000397981		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
intron-3CDS	ENST00000540670	ENST00000545011		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
intron-3CDS	ENST00000540670	ENST00000397983		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
intron-3CDS	ENST00000540670	ENST00000397979		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000590729	ENST00000397981		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000590729	ENST00000545011		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000590729	ENST00000397983		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
Frame-shit	ENST00000590729	ENST00000397979		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
5UTR-3CDS	ENST00000590511	ENST00000397981		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
5UTR-3CDS	ENST00000590511	ENST00000545011		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
5UTR-3CDS	ENST00000590511	ENST00000397983		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
5UTR-3CDS	ENST00000590511	ENST00000397979		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LONP1	chr19	5719715	-	MAP2K7	chr19	7974640	+
3UTR-3CDS	ENST00000306708	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LRRC8E	chr19	7965820	+	MFSD12	chr19	3546166	-
3UTR-3CDS	ENST00000306708	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LRRC8E	chr19	7965820	+	MFSD12	chr19	3546166	-
3UTR-3CDS	ENST00000306708	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LRRC8E	chr19	7965820	+	MFSD12	chr19	3546166	-
3UTR-intron	ENST00000306708	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	LRRC8E	chr19	7965820	+	MFSD12	chr19	3546166	-
intron-3CDS	ENST00000397981	ENST00000269886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000397981	ENST00000598564		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000397981	ENST00000417295		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000545011	ENST00000269886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000545011	ENST00000598564		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000545011	ENST00000417295		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
In-frame	ENST00000397983	ENST00000269886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
In-frame	ENST00000397983	ENST00000598564		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
Frame-shit	ENST00000397983	ENST00000417295		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000397979	ENST00000269886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000397979	ENST00000598564		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
intron-3CDS	ENST00000397979	ENST00000417295		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MAP2K7	chr19	7970740	+	SH3GL1	chr19	4361793	-
5CDS-intron	ENST00000389395	ENST00000579649		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-3UTR	ENST00000389395	ENST00000582380		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-5UTR	ENST00000389395	ENST00000577222		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000389395	ENST00000347512		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000389395	ENST00000579446		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000389395	ENST00000394580		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000398558	ENST00000579649		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-3UTR	ENST00000398558	ENST00000582380		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-5UTR	ENST00000398558	ENST00000577222		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000398558	ENST00000347512		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000398558	ENST00000579446		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000398558	ENST00000394580		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000355415	ENST00000579649		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-3UTR	ENST00000355415	ENST00000582380		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-5UTR	ENST00000355415	ENST00000577222		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000355415	ENST00000347512		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000355415	ENST00000579446		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
5CDS-intron	ENST00000355415	ENST00000394580		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
intron-intron	ENST00000591878	ENST00000579649		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
intron-3UTR	ENST00000591878	ENST00000582380		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
intron-5UTR	ENST00000591878	ENST00000577222		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
intron-intron	ENST00000591878	ENST00000347512		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
intron-intron	ENST00000591878	ENST00000579446		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
intron-intron	ENST00000591878	ENST00000394580		TCGA	LD	BRCA	TCGA-C8-A12L-01A	MFSD12	chr19	3547270	-	RPL36	chr19	5690042	+
Frame-shit	ENST00000338368	ENST00000318124		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRKDC	chr8	48761715	-	DEFB103B	chr8	7286651	-
Frame-shit	ENST00000314191	ENST00000318124		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRKDC	chr8	48761715	-	DEFB103B	chr8	7286651	-
5UTR-3CDS	ENST00000523565	ENST00000318124		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRKDC	chr8	48761715	-	DEFB103B	chr8	7286651	-
In-frame	ENST00000378572	ENST00000324631		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
In-frame	ENST00000378572	ENST00000377328		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
In-frame	ENST00000378572	ENST00000352115		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
In-frame	ENST00000378572	ENST00000282343		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
In-frame	ENST00000378572	ENST00000377331		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
5CDS-intron	ENST00000378572	ENST00000396576		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
5CDS-intron	ENST00000378572	ENST00000377319		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
5CDS-intron	ENST00000378572	ENST00000377329		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
5CDS-intron	ENST00000378572	ENST00000377315		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
5CDS-3UTR	ENST00000378572	ENST00000467034		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PRPF18	chr10	13647744	+	CACNB2	chr10	18439812	+
In-frame	ENST00000393203	ENST00000256646		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PTGFRN	chr1	117492194	+	NOTCH2	chr1	120512367	-
5CDS-intron	ENST00000393203	ENST00000602566		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PTGFRN	chr1	117492194	+	NOTCH2	chr1	120512367	-
5CDS-intron	ENST00000393203	ENST00000493703		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PTGFRN	chr1	117492194	+	NOTCH2	chr1	120512367	-
intron-3CDS	ENST00000496699	ENST00000256646		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PTGFRN	chr1	117492194	+	NOTCH2	chr1	120512367	-
intron-intron	ENST00000496699	ENST00000602566		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PTGFRN	chr1	117492194	+	NOTCH2	chr1	120512367	-
intron-intron	ENST00000496699	ENST00000493703		TCGA	LD	BRCA	TCGA-C8-A12L-01A	PTGFRN	chr1	117492194	+	NOTCH2	chr1	120512367	-
5CDS-intron	ENST00000424082	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000424082	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000424082	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000424082	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-3UTR	ENST00000424082	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000259351	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000259351	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000259351	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000259351	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-3UTR	ENST00000259351	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000394022	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000394022	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000394022	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000394022	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-3UTR	ENST00000394022	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373436	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373436	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373436	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373436	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-3UTR	ENST00000373436	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373434	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373434	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373434	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-intron	ENST00000373434	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
5CDS-3UTR	ENST00000373434	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000394011	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000394011	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000394011	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000394011	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-3UTR	ENST00000394011	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000480993	ENST00000545391		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000480993	ENST00000361171		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000480993	ENST00000436593		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-intron	ENST00000480993	ENST00000535766		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-3UTR	ENST00000480993	ENST00000485886		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RALGPS1	chr9	129831635	+	MVB12B	chr9	129265456	+
intron-3CDS	ENST00000579649	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
intron-3CDS	ENST00000579649	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
intron-3CDS	ENST00000579649	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
intron-intron	ENST00000579649	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
In-frame	ENST00000582380	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
In-frame	ENST00000582380	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
In-frame	ENST00000582380	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5CDS-intron	ENST00000582380	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000577222	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000577222	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000577222	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-intron	ENST00000577222	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000347512	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000347512	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000347512	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-intron	ENST00000347512	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000579446	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000579446	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000579446	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-intron	ENST00000579446	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000394580	ENST00000389395		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000394580	ENST00000398558		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-3CDS	ENST00000394580	ENST00000355415		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5UTR-intron	ENST00000394580	ENST00000591878		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RPL36	chr19	5690338	+	MFSD12	chr19	3544937	-
5CDS-5UTR	ENST00000477973	ENST00000301964		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RYBP	chr3	72495647	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000477973	ENST00000440161		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RYBP	chr3	72495647	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000477973	ENST00000343450		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RYBP	chr3	72495647	-	TADA3	chr3	9833177	-
5CDS-intron	ENST00000477973	ENST00000492635		TCGA	LD	BRCA	TCGA-C8-A12L-01A	RYBP	chr3	72495647	-	TADA3	chr3	9833177	-
Frame-shit	ENST00000392011	ENST00000373316		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000392011	ENST00000442431		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000392011	ENST00000537456		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
5CDS-intron	ENST00000392011	ENST00000476531		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000409212	ENST00000373316		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000409212	ENST00000442431		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000409212	ENST00000537456		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
5CDS-intron	ENST00000409212	ENST00000476531		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000344528	ENST00000373316		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000344528	ENST00000442431		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
Frame-shit	ENST00000344528	ENST00000537456		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
5CDS-intron	ENST00000344528	ENST00000476531		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
intron-3CDS	ENST00000489601	ENST00000373316		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
intron-3CDS	ENST00000489601	ENST00000442431		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
intron-3CDS	ENST00000489601	ENST00000537456		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
intron-intron	ENST00000489601	ENST00000476531		TCGA	LD	BRCA	TCGA-C8-A12L-01A	SH3BP4	chr2	235943764	+	PGK1	chrX	77378692	+
In-frame	ENST00000588240	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A12L-01A	TAF15	chr17	34169463	+	MAN1A2	chr1	118035769	+
5CDS-intron	ENST00000588240	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A12L-01A	TAF15	chr17	34169463	+	MAN1A2	chr1	118035769	+
In-frame	ENST00000592237	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A12L-01A	TAF15	chr17	34169463	+	MAN1A2	chr1	118035769	+
5CDS-intron	ENST00000592237	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A12L-01A	TAF15	chr17	34169463	+	MAN1A2	chr1	118035769	+
In-frame	ENST00000311979	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A12L-01A	TAF15	chr17	34169463	+	MAN1A2	chr1	118035769	+
5CDS-intron	ENST00000311979	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A12L-01A	TAF15	chr17	34169463	+	MAN1A2	chr1	118035769	+
5CDS-5UTR	ENST00000321297	ENST00000313871		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ATG16L2	chr11	72538338	+	AKAP17A	chrY	1662337	+
5CDS-5UTR	ENST00000321297	ENST00000381261		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ATG16L2	chr11	72538338	+	AKAP17A	chrY	1662337	+
intron-5UTR	ENST00000534905	ENST00000313871		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ATG16L2	chr11	72538338	+	AKAP17A	chrY	1662337	+
intron-5UTR	ENST00000534905	ENST00000381261		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ATG16L2	chr11	72538338	+	AKAP17A	chrY	1662337	+
intron-5UTR	ENST00000451353	ENST00000313871		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ATG16L2	chr11	72538338	+	AKAP17A	chrY	1662337	+
intron-5UTR	ENST00000451353	ENST00000381261		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ATG16L2	chr11	72538338	+	AKAP17A	chrY	1662337	+
intron-3CDS	ENST00000392446	ENST00000583610		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000392446	ENST00000394294		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000392446	ENST00000264658		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000392446	ENST00000577399		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000302345	ENST00000583610		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000302345	ENST00000394294		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000302345	ENST00000264658		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000302345	ENST00000577399		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000591773	ENST00000583610		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000591773	ENST00000394294		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000591773	ENST00000264658		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
intron-3CDS	ENST00000591773	ENST00000577399		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000591732	ENST00000583610		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000591732	ENST00000394294		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000591732	ENST00000264658		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000591732	ENST00000577399		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CANT1	chr17	77001454	-	FBXL20	chr17	37459892	-
Frame-shit	ENST00000430627	ENST00000337714		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000430627	ENST00000314126		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000430627	ENST00000571629		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000430627	ENST00000572557		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000430627	ENST00000539273		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
Frame-shit	ENST00000447079	ENST00000337714		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000447079	ENST00000314126		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000447079	ENST00000571629		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000447079	ENST00000572557		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
5CDS-intron	ENST00000447079	ENST00000539273		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
intron-3CDS	ENST00000559545	ENST00000337714		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
intron-intron	ENST00000559545	ENST00000314126		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
intron-intron	ENST00000559545	ENST00000571629		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
intron-intron	ENST00000559545	ENST00000572557		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
intron-intron	ENST00000559545	ENST00000539273		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CDK12	chr17	37628016	+	AKAP1	chr17	55187386	+
In-frame	ENST00000261401	ENST00000315192		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000261401	ENST00000548883		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000261401	ENST00000548048		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000261401	ENST00000378113		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000261401	ENST00000548789		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
Frame-shit	ENST00000541050	ENST00000315192		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000541050	ENST00000548883		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000541050	ENST00000548048		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000541050	ENST00000378113		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000541050	ENST00000548789		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
intron-3CDS	ENST00000549384	ENST00000315192		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
intron-intron	ENST00000549384	ENST00000548883		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
intron-intron	ENST00000549384	ENST00000548048		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
intron-intron	ENST00000549384	ENST00000378113		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
intron-intron	ENST00000549384	ENST00000548789		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
Frame-shit	ENST00000421578	ENST00000315192		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000421578	ENST00000548883		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000421578	ENST00000548048		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000421578	ENST00000378113		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000421578	ENST00000548789		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
In-frame	ENST00000420959	ENST00000315192		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000420959	ENST00000548883		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000420959	ENST00000548048		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000420959	ENST00000378113		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000420959	ENST00000548789		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
In-frame	ENST00000549772	ENST00000315192		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000549772	ENST00000548883		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000549772	ENST00000548048		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000549772	ENST00000378113		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000549772	ENST00000548789		TCGA	LD	BRCA	TCGA-C8-A12M-01A	CORO1C	chr12	109072048	-	C12orf42	chr12	103670988	-
5CDS-intron	ENST00000225792	ENST00000450662		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
5CDS-intron	ENST00000225792	ENST00000305286		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
5CDS-intron	ENST00000450599	ENST00000450662		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
5CDS-intron	ENST00000450599	ENST00000305286		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
5CDS-intron	ENST00000578804	ENST00000450662		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
5CDS-intron	ENST00000578804	ENST00000305286		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
intron-intron	ENST00000580026	ENST00000450662		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
intron-intron	ENST00000580026	ENST00000305286		TCGA	LD	BRCA	TCGA-C8-A12M-01A	DDX5	chr17	62499921	-	EFCAB3	chr17	60430294	+
5UTR-5UTR	ENST00000299293	ENST00000393330		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000299293	ENST00000247829		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000299293	ENST00000546561		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-intron	ENST00000299293	ENST00000552128		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000299293	ENST00000552786		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000549921	ENST00000393330		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000549921	ENST00000247829		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000549921	ENST00000546561		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-intron	ENST00000549921	ENST00000552128		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000549921	ENST00000552786		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000550389	ENST00000393330		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000550389	ENST00000247829		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000550389	ENST00000546561		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-intron	ENST00000550389	ENST00000552128		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000550389	ENST00000552786		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000397997	ENST00000393330		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000397997	ENST00000247829		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000397997	ENST00000546561		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
intron-intron	ENST00000397997	ENST00000552128		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000397997	ENST00000552786		TCGA	LD	BRCA	TCGA-C8-A12M-01A	FRS2	chr12	69864310	+	TSPAN8	chr12	71551567	-
In-frame	ENST00000377560	ENST00000267260		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
5CDS-intron	ENST00000377560	ENST00000537597		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
Frame-shit	ENST00000430131	ENST00000267260		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
5CDS-intron	ENST00000430131	ENST00000537597		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
In-frame	ENST00000550722	ENST00000267260		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
5CDS-intron	ENST00000550722	ENST00000537597		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
intron-3CDS	ENST00000549141	ENST00000267260		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
intron-intron	ENST00000549141	ENST00000537597		TCGA	LD	BRCA	TCGA-C8-A12M-01A	HECTD4	chr12	112605121	-	SRRM4	chr12	119554742	+
Frame-shit	ENST00000281928	ENST00000257575		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
Frame-shit	ENST00000281928	ENST00000392549		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
Frame-shit	ENST00000281928	ENST00000407967		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
Frame-shit	ENST00000281928	ENST00000319176		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
5CDS-intron	ENST00000281928	ENST00000551251		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
intron-3CDS	ENST00000551197	ENST00000257575		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
intron-3CDS	ENST00000551197	ENST00000392549		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
intron-3CDS	ENST00000551197	ENST00000407967		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
intron-3CDS	ENST00000551197	ENST00000319176		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
intron-intron	ENST00000551197	ENST00000551251		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MED13L	chr12	116534474	-	RNFT2	chr12	117204619	+
In-frame	ENST00000416426	ENST00000316881		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
5CDS-intron	ENST00000416426	ENST00000573108		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
5CDS-intron	ENST00000416426	ENST00000537230		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
In-frame	ENST00000284073	ENST00000316881		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
5CDS-intron	ENST00000284073	ENST00000573108		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
5CDS-intron	ENST00000284073	ENST00000537230		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
In-frame	ENST00000322684	ENST00000316881		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
5CDS-intron	ENST00000322684	ENST00000573108		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
5CDS-intron	ENST00000322684	ENST00000537230		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-3CDS	ENST00000442934	ENST00000316881		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-intron	ENST00000442934	ENST00000573108		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-intron	ENST00000442934	ENST00000537230		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-3CDS	ENST00000579180	ENST00000316881		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-intron	ENST00000579180	ENST00000573108		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-intron	ENST00000579180	ENST00000537230		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-3CDS	ENST00000579505	ENST00000316881		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-intron	ENST00000579505	ENST00000573108		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
intron-intron	ENST00000579505	ENST00000537230		TCGA	LD	BRCA	TCGA-C8-A12M-01A	MSI2	chr17	55339553	+	TRIM25	chr17	54985924	-
Frame-shit	ENST00000308249	ENST00000262291		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PPM1E	chr17	56833822	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000308249	ENST00000537567		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PPM1E	chr17	56833822	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000308249	ENST00000539763		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PPM1E	chr17	56833822	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000308249	ENST00000536180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PPM1E	chr17	56833822	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000308249	ENST00000545362		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PPM1E	chr17	56833822	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000308249	ENST00000588617		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PPM1E	chr17	56833822	+	VMP1	chr17	57886157	+
intron-5UTR	ENST00000408388	ENST00000395386		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PVT1	chr8	128903244	+	PHF20L1	chr8	133790038	+
intron-5UTR	ENST00000408388	ENST00000337920		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PVT1	chr8	128903244	+	PHF20L1	chr8	133790038	+
intron-5UTR	ENST00000408388	ENST00000395376		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PVT1	chr8	128903244	+	PHF20L1	chr8	133790038	+
intron-5UTR	ENST00000408388	ENST00000220847		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PVT1	chr8	128903244	+	PHF20L1	chr8	133790038	+
intron-5UTR	ENST00000408388	ENST00000395390		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PVT1	chr8	128903244	+	PHF20L1	chr8	133790038	+
intron-5UTR	ENST00000408388	ENST00000395379		TCGA	LD	BRCA	TCGA-C8-A12M-01A	PVT1	chr8	128903244	+	PHF20L1	chr8	133790038	+
5UTR-3CDS	ENST00000537330	ENST00000318698		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
5UTR-3CDS	ENST00000537330	ENST00000566473		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
5UTR-intron	ENST00000537330	ENST00000574292		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
Frame-shit	ENST00000570891	ENST00000318698		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
Frame-shit	ENST00000570891	ENST00000566473		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
5CDS-intron	ENST00000570891	ENST00000574292		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
Frame-shit	ENST00000306801	ENST00000318698		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
Frame-shit	ENST00000306801	ENST00000566473		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
5CDS-intron	ENST00000306801	ENST00000574292		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
Frame-shit	ENST00000544334	ENST00000318698		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
Frame-shit	ENST00000544334	ENST00000566473		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
5CDS-intron	ENST00000544334	ENST00000574292		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
intron-3CDS	ENST00000575542	ENST00000318698		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
intron-3CDS	ENST00000575542	ENST00000566473		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
intron-intron	ENST00000575542	ENST00000574292		TCGA	LD	BRCA	TCGA-C8-A12M-01A	RPTOR	chr17	78519591	+	ANKFN1	chr17	54403582	+
intron-intron	ENST00000339208	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000339208	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000339208	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000339208	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000339208	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000339208	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000346661	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000346661	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000346661	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000346661	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000346661	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000346661	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000345615	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000345615	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000345615	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000345615	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000345615	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000345615	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000502449	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000502449	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000502449	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000502449	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000502449	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000502449	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000591288	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000591288	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000591288	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000591288	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000591288	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000591288	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000394378	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000394378	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000394378	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000394378	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000394378	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000394378	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000585472	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000585472	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000585472	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000585472	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000585472	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000585472	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000588194	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000588194	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000588194	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000588194	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000588194	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
intron-intron	ENST00000588194	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35931007	-	MSI2	chr17	55484259	+
In-frame	ENST00000339208	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000339208	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000339208	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000339208	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000339208	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000339208	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000339208	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000339208	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000346661	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000346661	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000346661	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000346661	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000346661	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000346661	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000346661	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000346661	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000345615	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000345615	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000345615	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000345615	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000345615	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000345615	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000345615	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000345615	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000502449	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000502449	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000502449	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000502449	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000502449	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000502449	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000502449	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000502449	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000591288	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000591288	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000591288	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000591288	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000591288	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000591288	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000591288	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000591288	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000394378	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000394378	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000394378	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000394378	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000394378	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000394378	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000394378	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000394378	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000585472	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000585472	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000585472	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000585472	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
In-frame	ENST00000585472	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000585472	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000585472	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000585472	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-3CDS	ENST00000588194	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-3CDS	ENST00000588194	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-3CDS	ENST00000588194	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-3CDS	ENST00000588194	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-3CDS	ENST00000588194	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-intron	ENST00000588194	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-intron	ENST00000588194	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-intron	ENST00000588194	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A12M-01A	SYNRG	chr17	35936439	-	TUBD1	chr17	57944110	-
5UTR-3CDS	ENST00000382869	ENST00000540661		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382869	ENST00000381801		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-intron	ENST00000382869	ENST00000482345		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382881	ENST00000540661		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382881	ENST00000381801		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-intron	ENST00000382881	ENST00000482345		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382874	ENST00000540661		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382874	ENST00000381801		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-intron	ENST00000382874	ENST00000482345		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382871	ENST00000540661		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-3CDS	ENST00000382871	ENST00000381801		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5UTR-intron	ENST00000382871	ENST00000482345		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
intron-3CDS	ENST00000382883	ENST00000540661		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
intron-3CDS	ENST00000382883	ENST00000381801		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
intron-intron	ENST00000382883	ENST00000482345		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
intron-3CDS	ENST00000494061	ENST00000540661		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
intron-3CDS	ENST00000494061	ENST00000381801		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
intron-intron	ENST00000494061	ENST00000482345		TCGA	LD	BRCA	TCGA-C8-A12M-01A	ZMYM2	chr13	20534166	+	MTMR6	chr13	25842079	-
5CDS-intron	ENST00000319023	ENST00000449833		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000409161		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000423696		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000338508		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000409530		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000449116		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000357171		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000319023	ENST00000468619		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000449833		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000409161		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000423696		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000338508		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000409530		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000449116		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000357171		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000539574	ENST00000468619		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000449833		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000409161		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000423696		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000338508		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000409530		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000449116		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000357171		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000530055	ENST00000468619		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000449833		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000409161		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000423696		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000338508		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000409530		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000449116		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000357171		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
intron-intron	ENST00000526039	ENST00000468619		TCGA	LD	BRCA	TCGA-C8-A12O-01A	NADSYN1	chr11	71202949	+	SHANK2	chr11	70742672	-
5UTR-3CDS	ENST00000257749	ENST00000390559		TCGA	LD	BRCA	TCGA-C8-A12P-01A	BACH2	chr6	91006199	-	IGHM	chr14	106322322	-
5UTR-3CDS	ENST00000537989	ENST00000390559		TCGA	LD	BRCA	TCGA-C8-A12P-01A	BACH2	chr6	91006199	-	IGHM	chr14	106322322	-
5UTR-3CDS	ENST00000343122	ENST00000390559		TCGA	LD	BRCA	TCGA-C8-A12P-01A	BACH2	chr6	91006199	-	IGHM	chr14	106322322	-
5UTR-3CDS	ENST00000470301	ENST00000390559		TCGA	LD	BRCA	TCGA-C8-A12P-01A	BACH2	chr6	91006199	-	IGHM	chr14	106322322	-
intron-intron	ENST00000315930	ENST00000302584		TCGA	LD	BRCA	TCGA-C8-A12P-01A	FGF13	chrX	137939674	-	NEUROD2	chr17	37764318	-
intron-intron	ENST00000305414	ENST00000302584		TCGA	LD	BRCA	TCGA-C8-A12P-01A	FGF13	chrX	137939674	-	NEUROD2	chr17	37764318	-
5CDS-intron	ENST00000441825	ENST00000302584		TCGA	LD	BRCA	TCGA-C8-A12P-01A	FGF13	chrX	137939674	-	NEUROD2	chr17	37764318	-
5CDS-intron	ENST00000370603	ENST00000302584		TCGA	LD	BRCA	TCGA-C8-A12P-01A	FGF13	chrX	137939674	-	NEUROD2	chr17	37764318	-
intron-intron	ENST00000541469	ENST00000302584		TCGA	LD	BRCA	TCGA-C8-A12P-01A	FGF13	chrX	137939674	-	NEUROD2	chr17	37764318	-
Frame-shit	ENST00000421109	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
Frame-shit	ENST00000421109	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
Frame-shit	ENST00000421109	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
Frame-shit	ENST00000421109	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
Frame-shit	ENST00000421109	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000421109	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394166	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394166	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394166	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394166	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394166	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3UTR	ENST00000394166	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394171	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394171	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394171	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394171	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000394171	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3UTR	ENST00000394171	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000453270	ENST00000416426		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000453270	ENST00000284073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000453270	ENST00000322684		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000453270	ENST00000442934		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000453270	ENST00000579180		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
intron-3UTR	ENST00000453270	ENST00000579505		TCGA	LD	BRCA	TCGA-C8-A12P-01A	NR2F2	chr15	96869581	+	MSI2	chr17	55607037	+
Frame-shit	ENST00000355680	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000355680	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000355680	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000355680	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000355680	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000355680	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000397638	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397638	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397638	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397638	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397638	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397638	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000291705	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000291705	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000291705	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000291705	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000291705	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000291705	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000458387	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000458387	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000458387	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000458387	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000458387	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000458387	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000451211	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000451211	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000451211	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000451211	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000451211	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000451211	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000397637	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397637	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397637	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397637	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397637	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397637	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000334494	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000334494	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000334494	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000334494	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000334494	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000334494	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000397628	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397628	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397628	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397628	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397628	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000397628	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000440086	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000440086	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000440086	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000440086	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000440086	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000440086	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
intron-3CDS	ENST00000491389	ENST00000420980		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000491389	ENST00000412732		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000491389	ENST00000416611		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000491389	ENST00000414789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000491389	ENST00000355526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000491389	ENST00000456296		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PRMT2	chr21	48056902	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000356126	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PSMD12	chr17	65340722	-	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000356126	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PSMD12	chr17	65340722	-	PRKCA	chr17	64492319	+
Frame-shit	ENST00000357146	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PSMD12	chr17	65340722	-	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000357146	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PSMD12	chr17	65340722	-	PRKCA	chr17	64492319	+
intron-3CDS	ENST00000581618	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PSMD12	chr17	65340722	-	PRKCA	chr17	64492319	+
intron-intron	ENST00000581618	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A12P-01A	PSMD12	chr17	65340722	-	PRKCA	chr17	64492319	+
In-frame	ENST00000399799	ENST00000289119		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19283708	-
In-frame	ENST00000399799	ENST00000580981		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19283708	-
5CDS-5UTR	ENST00000399799	ENST00000578270		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19283708	-
5CDS-5UTR	ENST00000399799	ENST00000579875		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19283708	-
5UTR-3CDS	ENST00000336308	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A12P-01A	STARD3	chr17	37793484	+	CASC3	chr17	38318006	+
3UTR-3CDS	ENST00000578232	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A12P-01A	STARD3	chr17	37793484	+	CASC3	chr17	38318006	+
5UTR-3CDS	ENST00000544210	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A12P-01A	STARD3	chr17	37793484	+	CASC3	chr17	38318006	+
5UTR-3CDS	ENST00000394250	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A12P-01A	STARD3	chr17	37793484	+	CASC3	chr17	38318006	+
5UTR-3CDS	ENST00000580611	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A12P-01A	STARD3	chr17	37793484	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000424155	ENST00000299468		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000424155	ENST00000369758		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000424155	ENST00000609372		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000424155	ENST00000308824		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000424155	ENST00000266078		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-3CDS	ENST00000299705	ENST00000299468		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000299705	ENST00000369758		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000299705	ENST00000609372		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000299705	ENST00000308824		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000299705	ENST00000266078		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-3CDS	ENST00000536821	ENST00000299468		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000536821	ENST00000369758		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000536821	ENST00000609372		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000536821	ENST00000308824		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000536821	ENST00000266078		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-3CDS	ENST00000558562	ENST00000299468		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000558562	ENST00000369758		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000558562	ENST00000609372		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000558562	ENST00000308824		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
intron-intron	ENST00000558562	ENST00000266078		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMED3	chr15	79705899	+	PCMTD2	chr20	62899240	+
Frame-shit	ENST00000186436	ENST00000327896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
Frame-shit	ENST00000186436	ENST00000417561		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
Frame-shit	ENST00000186436	ENST00000490605		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000186436	ENST00000393526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000186436	ENST00000470789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
intron-3CDS	ENST00000425805	ENST00000327896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
intron-3CDS	ENST00000425805	ENST00000417561		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
intron-3CDS	ENST00000425805	ENST00000490605		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
intron-intron	ENST00000425805	ENST00000393526		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
intron-intron	ENST00000425805	ENST00000470789		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TMEM131	chr2	98408849	-	FAM178B	chr2	97613639	-
Frame-shit	ENST00000372813	ENST00000543086		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
Frame-shit	ENST00000372813	ENST00000546231		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
Frame-shit	ENST00000372813	ENST00000397203		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
Frame-shit	ENST00000372813	ENST00000360905		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
Frame-shit	ENST00000372813	ENST00000589028		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
Frame-shit	ENST00000372813	ENST00000355446		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
5CDS-intron	ENST00000372813	ENST00000536573		TCGA	LD	BRCA	TCGA-C8-A12P-01A	TOMM34	chr20	43580474	-	ERC1	chr12	1553728	+
3UTR-3CDS	ENST00000494757	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000494757	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
In-frame	ENST00000323571	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000323571	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
In-frame	ENST00000585043	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000585043	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000394103	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394103	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000536600	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000536600	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
In-frame	ENST00000583130	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000583130	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12P-01A	WIPF2	chr17	38421398	+	IKZF3	chr17	37949186	-
3UTR-5UTR	ENST00000520584	ENST00000520052		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-5UTR	ENST00000520584	ENST00000520734		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-intron	ENST00000520584	ENST00000518386		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-5UTR	ENST00000330701	ENST00000520052		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-5UTR	ENST00000330701	ENST00000520734		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-intron	ENST00000330701	ENST00000518386		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000522233	ENST00000520052		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000522233	ENST00000520734		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
intron-intron	ENST00000522233	ENST00000518386		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-5UTR	ENST00000522452	ENST00000520052		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-5UTR	ENST00000522452	ENST00000520734		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
3UTR-intron	ENST00000522452	ENST00000518386		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFP41	chr8	144333510	+	ANGPT1	chr8	108334356	-
5CDS-5UTR	ENST00000407775	ENST00000520268		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFPM2	chr8	106456609	+	KB-1562D12.1	chr8	102473845	-
5UTR-5UTR	ENST00000520492	ENST00000520268		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFPM2	chr8	106456609	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000517361	ENST00000520268		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFPM2	chr8	106456609	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000522296	ENST00000520268		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFPM2	chr8	106456609	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000378472	ENST00000520268		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZFPM2	chr8	106456609	+	KB-1562D12.1	chr8	102473845	-
intron-3CDS	ENST00000589046	ENST00000291560		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
intron-3CDS	ENST00000589046	ENST00000542962		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
5UTR-3CDS	ENST00000420450	ENST00000291560		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
5UTR-3CDS	ENST00000420450	ENST00000542962		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
5UTR-3CDS	ENST00000526123	ENST00000291560		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
5UTR-3CDS	ENST00000526123	ENST00000542962		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
3UTR-3CDS	ENST00000432005	ENST00000291560		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
3UTR-3CDS	ENST00000432005	ENST00000542962		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
intron-3CDS	ENST00000529555	ENST00000291560		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
intron-3CDS	ENST00000529555	ENST00000542962		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF345	chr19	37341870	+	HSF2BP	chr21	45012209	-
intron-3CDS	ENST00000588723	ENST00000599564		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588723	ENST00000317991		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588723	ENST00000504615		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588723	ENST00000411896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-intron	ENST00000588723	ENST00000424536		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-intron	ENST00000588723	ENST00000598073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000356958	ENST00000599564		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000356958	ENST00000317991		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000356958	ENST00000504615		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000356958	ENST00000411896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-intron	ENST00000356958	ENST00000424536		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-intron	ENST00000356958	ENST00000598073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000292841	ENST00000599564		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000292841	ENST00000317991		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000292841	ENST00000504615		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000292841	ENST00000411896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-intron	ENST00000292841	ENST00000424536		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-intron	ENST00000292841	ENST00000598073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000392157	ENST00000599564		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000392157	ENST00000317991		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000392157	ENST00000504615		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000392157	ENST00000411896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-intron	ENST00000392157	ENST00000424536		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-intron	ENST00000392157	ENST00000598073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000355533	ENST00000599564		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000355533	ENST00000317991		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000355533	ENST00000504615		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-3CDS	ENST00000355533	ENST00000411896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-intron	ENST00000355533	ENST00000424536		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
5UTR-intron	ENST00000355533	ENST00000598073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588354	ENST00000599564		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588354	ENST00000317991		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588354	ENST00000504615		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-3CDS	ENST00000588354	ENST00000411896		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-intron	ENST00000588354	ENST00000424536		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
intron-intron	ENST00000588354	ENST00000598073		TCGA	LD	BRCA	TCGA-C8-A12P-01A	ZNF585A	chr19	37656497	-	GRAMD1A	chr19	35504445	+
In-frame	ENST00000377776	ENST00000389413		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000377776	ENST00000409483		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000377776	ENST00000389416		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000377776	ENST00000389418		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000377776	ENST00000404321		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000256001	ENST00000389413		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000256001	ENST00000409483		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000256001	ENST00000389416		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000256001	ENST00000389418		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000256001	ENST00000404321		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000397282	ENST00000389413		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000397282	ENST00000409483		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000397282	ENST00000389416		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000397282	ENST00000389418		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000397282	ENST00000404321		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000537264	ENST00000389413		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000537264	ENST00000409483		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000537264	ENST00000389416		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000537264	ENST00000389418		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
In-frame	ENST00000537264	ENST00000404321		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
intron-3CDS	ENST00000488782	ENST00000389413		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
intron-3CDS	ENST00000488782	ENST00000409483		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
intron-3CDS	ENST00000488782	ENST00000389416		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
intron-3CDS	ENST00000488782	ENST00000389418		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
intron-3CDS	ENST00000488782	ENST00000404321		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ACTR3B	chr7	152522207	+	PTPRN2	chr7	157388007	-
Frame-shit	ENST00000377022	ENST00000376957		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CASZ1	chr1	10753931	-	SRM	chr1	11119402	-
Frame-shit	ENST00000344008	ENST00000376957		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CASZ1	chr1	10753931	-	SRM	chr1	11119402	-
5UTR-3CDS	ENST00000478728	ENST00000376957		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CASZ1	chr1	10753931	-	SRM	chr1	11119402	-
5UTR-3CDS	ENST00000368439	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5UTR-3CDS	ENST00000368439	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5UTR-3CDS	ENST00000368439	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5UTR-3CDS	ENST00000368439	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5UTR-3CDS	ENST00000368439	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5UTR-3CDS	ENST00000368439	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5UTR-intron	ENST00000368439	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000368436	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000368436	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000368436	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000368436	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000368436	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000368436	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000368436	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000308987	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000308987	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000308987	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000308987	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000308987	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000308987	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000308987	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000471245	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000471245	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000471245	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000471245	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000471245	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000471245	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-intron	ENST00000471245	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000600888	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000600888	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000600888	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000600888	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000600888	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000600888	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
intron-intron	ENST00000600888	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CKS1B	chr1	154947280	+	SHC1	chr1	154938993	-
In-frame	ENST00000393893	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
In-frame	ENST00000393893	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
5CDS-intron	ENST00000393893	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
Frame-shit	ENST00000341356	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
5CDS-intron	ENST00000341356	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000539724	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-intron	ENST00000539724	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000453768	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-intron	ENST00000453768	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-3CDS	ENST00000545016	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
intron-intron	ENST00000545016	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CORO1B	chr11	67207589	-	ERBB2	chr17	37868181	+
5UTR-3CDS	ENST00000505841	ENST00000606738		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CYP4Z2P	chr1	47364515	-	TRABD2B	chr1	48267291	-
5UTR-5UTR	ENST00000505841	ENST00000435576		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	CYP4Z2P	chr1	47364515	-	TRABD2B	chr1	48267291	-
In-frame	ENST00000227756	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000227756	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000227756	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000227756	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000227756	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000526064	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000526064	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000526064	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000526064	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000526064	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GALNT18	chr11	11642906	-	PPP1R1B	chr17	37785423	+
3UTR-3CDS	ENST00000313949	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000313949	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000313949	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000313949	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000313949	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000371098	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000371098	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000371098	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000371098	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000371098	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000371075	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000371075	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000371075	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000371075	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000371075	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371100	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371100	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371100	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371100	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371100	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000371099	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000371099	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000371099	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-intron	ENST00000371099	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-intron	ENST00000371099	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371102	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371102	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371102	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371102	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371102	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000464624	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000464624	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-3CDS	ENST00000464624	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000464624	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
3UTR-intron	ENST00000464624	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000306120	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000306120	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000306120	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-intron	ENST00000306120	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-intron	ENST00000306120	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371095	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371095	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371095	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371095	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371095	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371085	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371085	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371085	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371085	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371085	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000354359	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000354359	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000354359	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000354359	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000354359	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000265620	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000265620	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000265620	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000265620	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000265620	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000306090	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000306090	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000306090	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000306090	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000306090	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371081	ENST00000023939		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371081	ENST00000395881		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
In-frame	ENST00000371081	ENST00000357348		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371081	ENST00000484084		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
5CDS-intron	ENST00000371081	ENST00000435342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	GNAS	chr20	57470739	+	RTFDC1	chr20	55059167	+
intron-3CDS	ENST00000316316	ENST00000352896		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316316	ENST00000368475		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316316	ENST00000338891		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316316	ENST00000521531		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316316	ENST00000522284		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
5UTR-3CDS	ENST00000505485	ENST00000352896		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
5UTR-3CDS	ENST00000505485	ENST00000368475		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
5UTR-3CDS	ENST00000505485	ENST00000338891		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
5UTR-3CDS	ENST00000505485	ENST00000521531		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
5UTR-3CDS	ENST00000505485	ENST00000522284		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316068	ENST00000352896		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316068	ENST00000368475		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316068	ENST00000338891		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316068	ENST00000521531		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000316068	ENST00000522284		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	MCM9	chr6	119215191	-	FAM184A	chr6	119338109	-
intron-3CDS	ENST00000340888	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000340888	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000340888	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000340888	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370150	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370150	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370150	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000370150	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000393831	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000393831	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000393831	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000393831	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370142	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370142	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370142	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000370142	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370145	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370145	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000370145	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000370145	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000447676	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000447676	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000447676	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000447676	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000475172	ENST00000310441		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000475172	ENST00000369984		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-3CDS	ENST00000475172	ENST00000354233		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
intron-intron	ENST00000475172	ENST00000461098		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PNCK	chrX	152952886	-	HCFC1	chrX	153230177	-
Frame-shit	ENST00000424085	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000257075	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000373747	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373747	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373747	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373747	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000426105	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000426105	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000426105	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000426105	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000440538	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000440538	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000440538	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000440538	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000373741	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373741	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373741	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373741	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000423018	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000423018	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000423018	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000423018	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000373742	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000490546	ENST00000373736		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000263693		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000528449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000398657		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-5UTR	ENST00000243662	ENST00000570565		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAB38	chr11	87908351	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000243662	ENST00000442502		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAB38	chr11	87908351	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000243662	ENST00000340813		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAB38	chr11	87908351	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000243662	ENST00000451037		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAB38	chr11	87908351	-	CA10	chr17	50149753	-
5CDS-5UTR	ENST00000243662	ENST00000285273		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAB38	chr11	87908351	-	CA10	chr17	50149753	-
5CDS-intron	ENST00000243662	ENST00000571918		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAB38	chr11	87908351	-	CA10	chr17	50149753	-
intron-3CDS	ENST00000307980	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000307980	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000307980	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000535644	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000535644	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67088804	+	IKZF3	chr17	37988404	-
5CDS-3UTR	ENST00000307980	ENST00000398645		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000307980	ENST00000529006		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
5CDS-3UTR	ENST00000307980	ENST00000526258		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000307980	ENST00000308783		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
5CDS-intron	ENST00000307980	ENST00000530342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
intron-3UTR	ENST00000535644	ENST00000398645		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
intron-3UTR	ENST00000535644	ENST00000529006		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
intron-3UTR	ENST00000535644	ENST00000526258		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
intron-intron	ENST00000535644	ENST00000308783		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
intron-intron	ENST00000535644	ENST00000530342		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RAD9A	chr11	67161261	+	KDM2A	chr11	67024955	+
5CDS-5UTR	ENST00000299563	ENST00000393408		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RNF169	chr11	74528759	+	CBX1	chr17	46154403	-
5CDS-5UTR	ENST00000299563	ENST00000225603		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RNF169	chr11	74528759	+	CBX1	chr17	46154403	-
5CDS-5UTR	ENST00000299563	ENST00000495350		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RNF169	chr11	74528759	+	CBX1	chr17	46154403	-
intron-3CDS	ENST00000492220	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000492220	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000492220	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000492220	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000492220	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000492220	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-intron	ENST00000492220	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000401000	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000401000	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000401000	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000401000	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000401000	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000401000	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000401000	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000539519	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000539519	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000539519	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000539519	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000539519	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000539519	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000539519	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369067	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369067	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369067	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369067	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369067	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369067	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000369067	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369068	ENST00000368445		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369068	ENST00000368449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369068	ENST00000448116		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369068	ENST00000368450		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369068	ENST00000368453		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
Frame-shit	ENST00000369068	ENST00000606391		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000369068	ENST00000490667		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	RPRD2	chr1	150337395	+	SHC1	chr1	154938993	-
intron-3UTR	ENST00000368445	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368445	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368445	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368445	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368445	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368449	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368449	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368449	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368449	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000368449	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000448116	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000448116	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000448116	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000448116	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000448116	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368450	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368450	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368450	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368450	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368450	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368453	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368453	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368453	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368453	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000368453	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000606391	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000606391	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000606391	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000606391	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000606391	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000490667	ENST00000492220		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000490667	ENST00000401000		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000490667	ENST00000539519		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000490667	ENST00000369067		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000490667	ENST00000369068		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SHC1	chr1	154946724	-	RPRD2	chr1	150390072	+
In-frame	ENST00000393946	ENST00000346672		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000393946	ENST00000360962		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000393946	ENST00000527634		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000393946	ENST00000540737		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000393946	ENST00000532565		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000393946	ENST00000525449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
5CDS-intron	ENST00000393946	ENST00000527368		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000525457	ENST00000346672		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000525457	ENST00000360962		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000525457	ENST00000527634		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000525457	ENST00000540737		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000525457	ENST00000532565		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000525457	ENST00000525449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
5CDS-intron	ENST00000525457	ENST00000527368		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000527043	ENST00000346672		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000527043	ENST00000360962		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000527043	ENST00000527634		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000527043	ENST00000540737		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000527043	ENST00000532565		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000527043	ENST00000525449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
5CDS-intron	ENST00000527043	ENST00000527368		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526281	ENST00000346672		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526281	ENST00000360962		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526281	ENST00000527634		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526281	ENST00000540737		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526281	ENST00000532565		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526281	ENST00000525449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
intron-intron	ENST00000526281	ENST00000527368		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	SYT12	chr11	66802309	+	C11orf80	chr11	66605841	+
In-frame	ENST00000254942	ENST00000323786		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5CDS-intron	ENST00000254942	ENST00000393612		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5CDS-intron	ENST00000254942	ENST00000564653		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
In-frame	ENST00000603068	ENST00000323786		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5CDS-intron	ENST00000603068	ENST00000393612		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5CDS-intron	ENST00000603068	ENST00000564653		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5UTR-3CDS	ENST00000569611	ENST00000323786		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5UTR-intron	ENST00000569611	ENST00000393612		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5UTR-intron	ENST00000569611	ENST00000564653		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
In-frame	ENST00000567296	ENST00000323786		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5CDS-intron	ENST00000567296	ENST00000393612		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
5CDS-intron	ENST00000567296	ENST00000564653		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	TERF2	chr16	69418483	-	COG4	chr16	70524295	-
3UTR-3CDS	ENST00000459775	ENST00000389394		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
3UTR-3CDS	ENST00000459775	ENST00000237449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
3UTR-intron	ENST00000459775	ENST00000398278		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
3UTR-intron	ENST00000459775	ENST00000468661		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
3UTR-intron	ENST00000459775	ENST00000602588		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000450066	ENST00000389394		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000450066	ENST00000237449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000450066	ENST00000398278		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000450066	ENST00000468661		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000450066	ENST00000602588		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000409025	ENST00000389394		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000409025	ENST00000237449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409025	ENST00000398278		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409025	ENST00000468661		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409025	ENST00000602588		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000409470	ENST00000389394		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000409470	ENST00000237449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409470	ENST00000398278		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409470	ENST00000468661		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409470	ENST00000602588		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000323701	ENST00000389394		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000323701	ENST00000237449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000323701	ENST00000398278		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000323701	ENST00000468661		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000323701	ENST00000602588		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000409766	ENST00000389394		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
Frame-shit	ENST00000409766	ENST00000237449		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409766	ENST00000398278		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409766	ENST00000468661		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5CDS-intron	ENST00000409766	ENST00000602588		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	USP39	chr2	85858069	+	DNAH6	chr2	84945328	+
5UTR-3CDS	ENST00000491507	ENST00000372277		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000491507	ENST00000372281		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000491507	ENST00000372275		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000491507	ENST00000372274		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3UTR	ENST00000491507	ENST00000467529		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000477374	ENST00000372277		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000477374	ENST00000372281		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000477374	ENST00000372275		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000477374	ENST00000372274		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5CDS-3UTR	ENST00000477374	ENST00000467529		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000478296	ENST00000372277		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000478296	ENST00000372281		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000478296	ENST00000372275		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000478296	ENST00000372274		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
intron-3UTR	ENST00000478296	ENST00000467529		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000422325	ENST00000372277		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000422325	ENST00000372281		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000422325	ENST00000372275		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
In-frame	ENST00000422325	ENST00000372274		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5CDS-3UTR	ENST00000422325	ENST00000467529		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000400845	ENST00000372277		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000400845	ENST00000372281		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000400845	ENST00000372275		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3CDS	ENST00000400845	ENST00000372274		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
5UTR-3UTR	ENST00000400845	ENST00000467529		TCGA	LD	BRCA	TCGA-C8-A12Q-01A	ZNF717	chr3	75832457	-	TMEM254	chr10	81841597	+
3UTR-3CDS	ENST00000525037	ENST00000503070		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
3UTR-intron	ENST00000525037	ENST00000511277		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
3UTR-intron	ENST00000525037	ENST00000300406		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
3UTR-intron	ENST00000525037	ENST00000515635		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
3UTR-intron	ENST00000525037	ENST00000507680		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
3UTR-intron	ENST00000525037	ENST00000511673		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
In-frame	ENST00000530173	ENST00000503070		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000530173	ENST00000511277		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000530173	ENST00000300406		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000530173	ENST00000515635		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000530173	ENST00000507680		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000530173	ENST00000511673		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
In-frame	ENST00000322157	ENST00000503070		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000322157	ENST00000511277		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000322157	ENST00000300406		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000322157	ENST00000515635		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000322157	ENST00000507680		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000322157	ENST00000511673		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
In-frame	ENST00000544660	ENST00000503070		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000544660	ENST00000511277		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000544660	ENST00000300406		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000544660	ENST00000515635		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000544660	ENST00000507680		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
5CDS-intron	ENST00000544660	ENST00000511673		TCGA	LD	BRCA	TCGA-C8-A12T-01A	NPEPPS	chr17	45646860	+	GNGT2	chr17	47280394	-
In-frame	ENST00000373664	ENST00000373803		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-intron	ENST00000373664	ENST00000359675		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-intron	ENST00000373664	ENST00000349004		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-5UTR	ENST00000373664	ENST00000373773		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-intron	ENST00000373664	ENST00000540765		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
In-frame	ENST00000344359	ENST00000373803		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-intron	ENST00000344359	ENST00000359675		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-intron	ENST00000344359	ENST00000349004		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-5UTR	ENST00000344359	ENST00000373773		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
5CDS-intron	ENST00000344359	ENST00000540765		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
intron-3CDS	ENST00000598590	ENST00000373803		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
intron-intron	ENST00000598590	ENST00000359675		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
intron-intron	ENST00000598590	ENST00000349004		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
intron-5UTR	ENST00000598590	ENST00000373773		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
intron-intron	ENST00000598590	ENST00000540765		TCGA	LD	BRCA	TCGA-C8-A12T-01A	RBL1	chr20	35651053	-	NDRG3	chr20	35335410	-
Frame-shit	ENST00000375200	ENST00000357156		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-3UTR	ENST00000375200	ENST00000480759		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000375200	ENST00000417166		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000375200	ENST00000300469		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000375200	ENST00000374846		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
Frame-shit	ENST00000342427	ENST00000357156		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-3UTR	ENST00000342427	ENST00000480759		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000342427	ENST00000417166		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000342427	ENST00000300469		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000342427	ENST00000374846		TCGA	LD	BRCA	TCGA-C8-A12T-01A	ZNF341	chr20	32345128	+	DYNLRB1	chr20	33128385	+
3UTR-3CDS	ENST00000485405	ENST00000316534		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
3UTR-3CDS	ENST00000485405	ENST00000445609		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
3UTR-3CDS	ENST00000485405	ENST00000393272		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
3UTR-3CDS	ENST00000485405	ENST00000355301		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
3UTR-3CDS	ENST00000485405	ENST00000417665		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
3UTR-intron	ENST00000485405	ENST00000418527		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
Frame-shit	ENST00000367915	ENST00000316534		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
Frame-shit	ENST00000367915	ENST00000445609		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
Frame-shit	ENST00000367915	ENST00000393272		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
Frame-shit	ENST00000367915	ENST00000355301		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
Frame-shit	ENST00000367915	ENST00000417665		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
5CDS-intron	ENST00000367915	ENST00000418527		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367917	ENST00000316534		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367917	ENST00000445609		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367917	ENST00000393272		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367917	ENST00000355301		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367917	ENST00000417665		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
5CDS-intron	ENST00000367917	ENST00000418527		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000254521	ENST00000316534		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000254521	ENST00000445609		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000254521	ENST00000393272		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000254521	ENST00000355301		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000254521	ENST00000417665		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
5CDS-intron	ENST00000254521	ENST00000418527		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367913	ENST00000316534		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367913	ENST00000445609		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367913	ENST00000393272		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367913	ENST00000355301		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
In-frame	ENST00000367913	ENST00000417665		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
5CDS-intron	ENST00000367913	ENST00000418527		TCGA	LD	BRCA	TCGA-C8-A12U-01A	HSD17B7	chr1	162762652	+	NPHP1	chr2	110927575	-
5CDS-3UTR	ENST00000316534	ENST00000367922		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-intron	ENST00000316534	ENST00000367921		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-3UTR	ENST00000445609	ENST00000367922		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-intron	ENST00000445609	ENST00000367921		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-3UTR	ENST00000393272	ENST00000367922		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-intron	ENST00000393272	ENST00000367921		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-3UTR	ENST00000355301	ENST00000367922		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-intron	ENST00000355301	ENST00000367921		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-3UTR	ENST00000417665	ENST00000367922		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-intron	ENST00000417665	ENST00000367921		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-3UTR	ENST00000418527	ENST00000367922		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
5CDS-intron	ENST00000418527	ENST00000367921		TCGA	LD	BRCA	TCGA-C8-A12U-01A	NPHP1	chr2	110958998	-	DDR2	chr1	162753587	+
In-frame	ENST00000409003	ENST00000287394		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
5CDS-5UTR	ENST00000409003	ENST00000521903		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
5CDS-intron	ENST00000409003	ENST00000534257		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
In-frame	ENST00000314727	ENST00000287394		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
5CDS-5UTR	ENST00000314727	ENST00000521903		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
5CDS-intron	ENST00000314727	ENST00000534257		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
intron-3CDS	ENST00000527515	ENST00000287394		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
intron-5UTR	ENST00000527515	ENST00000521903		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
intron-intron	ENST00000527515	ENST00000534257		TCGA	LD	BRCA	TCGA-C8-A12U-01A	SAMD12	chr8	119592954	-	ATAD2	chr8	124392917	-
In-frame	ENST00000375095	ENST00000260264		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
In-frame	ENST00000375095	ENST00000543440		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
In-frame	ENST00000314475	ENST00000260264		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
In-frame	ENST00000314475	ENST00000543440		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
intron-3CDS	ENST00000531346	ENST00000260264		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
intron-3CDS	ENST00000531346	ENST00000543440		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
In-frame	ENST00000529187	ENST00000260264		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
In-frame	ENST00000529187	ENST00000543440		TCGA	LD	BRCA	TCGA-C8-A12U-01A	TMEM136	chr11	120198349	+	POU2F3	chr11	120139919	+
In-frame	ENST00000324856	ENST00000368378		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-intron	ENST00000324856	ENST00000541576		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-intron	ENST00000324856	ENST00000457183		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-5UTR	ENST00000324856	ENST00000541990		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-5UTR	ENST00000324856	ENST00000486260		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
In-frame	ENST00000457599	ENST00000368378		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-intron	ENST00000457599	ENST00000541576		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-intron	ENST00000457599	ENST00000457183		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-5UTR	ENST00000457599	ENST00000541990		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-5UTR	ENST00000457599	ENST00000486260		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
In-frame	ENST00000374152	ENST00000368378		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-intron	ENST00000374152	ENST00000541576		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-intron	ENST00000374152	ENST00000457183		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-5UTR	ENST00000374152	ENST00000541990		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
5CDS-5UTR	ENST00000374152	ENST00000486260		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
intron-3CDS	ENST00000540690	ENST00000368378		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
intron-intron	ENST00000540690	ENST00000541576		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
intron-intron	ENST00000540690	ENST00000457183		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
intron-5UTR	ENST00000540690	ENST00000541990		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
intron-5UTR	ENST00000540690	ENST00000486260		TCGA	LD	BRCA	TCGA-C8-A12V-01A	ARID1A	chr1	27059283	+	THBS3	chr1	155172928	-
Frame-shit	ENST00000448838	ENST00000531120		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
Frame-shit	ENST00000448838	ENST00000524896		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
5CDS-intron	ENST00000448838	ENST00000532054		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
Frame-shit	ENST00000227868	ENST00000531120		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
Frame-shit	ENST00000227868	ENST00000524896		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
5CDS-intron	ENST00000227868	ENST00000532054		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
intron-3CDS	ENST00000430469	ENST00000531120		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
intron-3CDS	ENST00000430469	ENST00000524896		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
intron-intron	ENST00000430469	ENST00000532054		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
intron-3CDS	ENST00000477173	ENST00000531120		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
intron-3CDS	ENST00000477173	ENST00000524896		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
intron-intron	ENST00000477173	ENST00000532054		TCGA	LD	BRCA	TCGA-C8-A12V-01A	PDHX	chr11	34979130	+	EIF3M	chr11	32622235	+
5UTR-3CDS	ENST00000336787	ENST00000435532		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000336787	ENST00000338963		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000336787	ENST00000508342		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000336787	ENST00000506154		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000336787	ENST00000508075		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-3CDS	ENST00000396307	ENST00000435532		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000396307	ENST00000338963		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000396307	ENST00000508342		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000396307	ENST00000506154		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000396307	ENST00000508075		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-3CDS	ENST00000564609	ENST00000435532		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000564609	ENST00000338963		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000564609	ENST00000508342		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000564609	ENST00000506154		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000564609	ENST00000508075		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-3CDS	ENST00000569493	ENST00000435532		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000569493	ENST00000338963		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000569493	ENST00000508342		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000569493	ENST00000506154		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
5UTR-intron	ENST00000569493	ENST00000508075		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
intron-3CDS	ENST00000561545	ENST00000435532		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
intron-intron	ENST00000561545	ENST00000338963		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
intron-intron	ENST00000561545	ENST00000508342		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
intron-intron	ENST00000561545	ENST00000506154		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
intron-intron	ENST00000561545	ENST00000508075		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RAB27A	chr15	55562363	-	NEDD4	chr15	56166206	-
Frame-shit	ENST00000334955	ENST00000344537		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
Frame-shit	ENST00000334955	ENST00000355917		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
Frame-shit	ENST00000334955	ENST00000338950		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
5CDS-intron	ENST00000334955	ENST00000462989		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
intron-3CDS	ENST00000445288	ENST00000344537		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
intron-3CDS	ENST00000445288	ENST00000355917		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
intron-3CDS	ENST00000445288	ENST00000338950		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
intron-intron	ENST00000445288	ENST00000462989		TCGA	LD	BRCA	TCGA-C8-A12V-01A	RSBN1L	chr7	77326372	+	DTNBP1	chr6	15652371	-
In-frame	ENST00000358602	ENST00000273951		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000358602	ENST00000504199		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000358602	ENST00000513476		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5CDS-intron	ENST00000358602	ENST00000503472		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000509867	ENST00000273951		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000509867	ENST00000504199		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000509867	ENST00000513476		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5CDS-intron	ENST00000509867	ENST00000503472		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000330838	ENST00000273951		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000330838	ENST00000504199		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
In-frame	ENST00000330838	ENST00000513476		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5CDS-intron	ENST00000330838	ENST00000503472		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5UTR-3CDS	ENST00000514252	ENST00000273951		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5UTR-3CDS	ENST00000514252	ENST00000504199		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5UTR-3CDS	ENST00000514252	ENST00000513476		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
5UTR-intron	ENST00000514252	ENST00000503472		TCGA	LD	BRCA	TCGA-C8-A12W-01A	ANKRD17	chr4	74000834	-	GC	chr4	72631360	-
Frame-shit	ENST00000298288	ENST00000322893		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000298288	ENST00000420622		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000298288	ENST00000394968		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000298288	ENST00000394964		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000318317	ENST00000322893		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000318317	ENST00000420622		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000318317	ENST00000394968		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000318317	ENST00000394964		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
intron-3CDS	ENST00000557531	ENST00000322893		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
intron-3CDS	ENST00000557531	ENST00000420622		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
intron-3CDS	ENST00000557531	ENST00000394968		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
intron-3CDS	ENST00000557531	ENST00000394964		TCGA	LD	BRCA	TCGA-C8-A12W-01A	LRR1	chr14	50065921	+	KCNH5	chr14	63473190	-
Frame-shit	ENST00000255882	ENST00000402357		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
Frame-shit	ENST00000255882	ENST00000358295		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5CDS-3UTR	ENST00000255882	ENST00000473898		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5CDS-3UTR	ENST00000255882	ENST00000406880		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
In-frame	ENST00000572273	ENST00000402357		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
In-frame	ENST00000572273	ENST00000358295		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5CDS-3UTR	ENST00000572273	ENST00000473898		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5CDS-3UTR	ENST00000572273	ENST00000406880		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
intron-3CDS	ENST00000414196	ENST00000402357		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
intron-3CDS	ENST00000414196	ENST00000358295		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
intron-3UTR	ENST00000414196	ENST00000473898		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
intron-3UTR	ENST00000414196	ENST00000406880		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5UTR-3CDS	ENST00000466162	ENST00000402357		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5UTR-3CDS	ENST00000466162	ENST00000358295		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5UTR-3UTR	ENST00000466162	ENST00000473898		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5UTR-3UTR	ENST00000466162	ENST00000406880		TCGA	LD	BRCA	TCGA-C8-A12W-01A	PI4KA	chr22	21147481	-	FAM19A5	chr22	49103529	+
5UTR-3CDS	ENST00000555209	ENST00000316902		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000555209	ENST00000469263		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000555209	ENST00000453702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000555209	ENST00000529705		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000555209	ENST00000422941		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000555209	ENST00000532568		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000359890	ENST00000316902		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000359890	ENST00000469263		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000359890	ENST00000453702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000359890	ENST00000529705		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000359890	ENST00000422941		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000359890	ENST00000532568		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000399922	ENST00000316902		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000399922	ENST00000469263		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000399922	ENST00000453702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000399922	ENST00000529705		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000399922	ENST00000422941		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000399922	ENST00000532568		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000346528	ENST00000316902		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000346528	ENST00000469263		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000346528	ENST00000453702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000346528	ENST00000529705		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000346528	ENST00000422941		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000346528	ENST00000532568		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000542016	ENST00000316902		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000542016	ENST00000469263		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000542016	ENST00000453702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000542016	ENST00000529705		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000542016	ENST00000422941		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000542016	ENST00000532568		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000556984	ENST00000316902		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000556984	ENST00000469263		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000556984	ENST00000453702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000556984	ENST00000529705		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000556984	ENST00000422941		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-intron	ENST00000556984	ENST00000532568		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RBM23	chr14	23388208	-	SLC7A8	chr14	23635749	-
5UTR-3CDS	ENST00000426256	ENST00000443326		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000426256	ENST00000414585		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000426256	ENST00000540643		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000426256	ENST00000432498		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000426256	ENST00000443011		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000426256	ENST00000400289		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000426256	ENST00000400288		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-intron	ENST00000426256	ENST00000474741		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000443326		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000414585		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000540643		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000432498		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000443011		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000400289		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000326132	ENST00000400288		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-intron	ENST00000326132	ENST00000474741		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000443326		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000414585		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000540643		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000432498		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000443011		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000400289		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-3CDS	ENST00000266252	ENST00000400288		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
5UTR-intron	ENST00000266252	ENST00000474741		TCGA	LD	BRCA	TCGA-C8-A12W-01A	RNF185	chr22	31556289	+	SFI1	chr22	31942847	+
In-frame	ENST00000291574	ENST00000237536		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
5CDS-5UTR	ENST00000291574	ENST00000279034		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
5CDS-intron	ENST00000291574	ENST00000456801		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
5CDS-5UTR	ENST00000291574	ENST00000357779		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
intron-3CDS	ENST00000380221	ENST00000237536		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
intron-5UTR	ENST00000380221	ENST00000279034		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
intron-intron	ENST00000380221	ENST00000456801		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
intron-5UTR	ENST00000380221	ENST00000357779		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
3UTR-3CDS	ENST00000483973	ENST00000237536		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
3UTR-5UTR	ENST00000483973	ENST00000279034		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
3UTR-intron	ENST00000483973	ENST00000456801		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
3UTR-5UTR	ENST00000483973	ENST00000357779		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRAPPC10	chr21	45514114	+	SOGA1	chr20	35467844	-
5CDS-intron	ENST00000451813	ENST00000244007		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000451813	ENST00000373272		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000451813	ENST00000373271		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000451813	ENST00000608689		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000252015	ENST00000244007		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000252015	ENST00000373272		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000252015	ENST00000373271		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000252015	ENST00000608689		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000539834	ENST00000244007		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000539834	ENST00000373272		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000539834	ENST00000373271		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000539834	ENST00000608689		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000432634	ENST00000244007		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000432634	ENST00000373272		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000432634	ENST00000373271		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-intron	ENST00000432634	ENST00000608689		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TRPC4AP	chr20	33622926	-	PLCG1	chr20	39825317	+
5CDS-5UTR	ENST00000337702	ENST00000430702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5CDS-5UTR	ENST00000337702	ENST00000394020		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5CDS-5UTR	ENST00000337702	ENST00000257527		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5CDS-5UTR	ENST00000337702	ENST00000517905		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5UTR-5UTR	ENST00000503936	ENST00000430702		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5UTR-5UTR	ENST00000503936	ENST00000394020		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5UTR-5UTR	ENST00000503936	ENST00000257527		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
5UTR-5UTR	ENST00000503936	ENST00000517905		TCGA	LD	BRCA	TCGA-C8-A12W-01A	TTC33	chr5	40746900	-	ADAM19	chr5	156964999	-
Frame-shit	ENST00000506646	ENST00000306749		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
5CDS-intron	ENST00000506646	ENST00000579758		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
5UTR-3CDS	ENST00000507078	ENST00000306749		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
5UTR-intron	ENST00000507078	ENST00000579758		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
intron-3CDS	ENST00000338977	ENST00000306749		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
intron-intron	ENST00000338977	ENST00000579758		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
intron-3CDS	ENST00000511833	ENST00000306749		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
intron-intron	ENST00000511833	ENST00000579758		TCGA	LD	BRCA	TCGA-C8-A12Y-01A	ZNF721	chr4	467770	-	FASN	chr17	80039719	-
Frame-shit	ENST00000548446	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000548446	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000548446	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000548446	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000548446	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000420353	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000420353	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000420353	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000420353	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000420353	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000415113	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000415113	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000415113	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000415113	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000415113	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000456903	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000456903	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000456903	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000456903	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000456903	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000548118	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000548118	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
Frame-shit	ENST00000548118	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000548118	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000548118	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000591397	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000591397	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000591397	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000591397	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000591397	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000328463	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000328463	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
In-frame	ENST00000328463	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-intron	ENST00000328463	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5CDS-3UTR	ENST00000328463	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
intron-3CDS	ENST00000546661	ENST00000553127		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
intron-3CDS	ENST00000546661	ENST00000321898		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
intron-3CDS	ENST00000546661	ENST00000552918		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
intron-intron	ENST00000546661	ENST00000547865		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
intron-3UTR	ENST00000546661	ENST00000552557		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ATF7	chr12	53946325	-	SPATS2	chr12	49890616	+
5UTR-5UTR	ENST00000220763	ENST00000443356		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
5UTR-5UTR	ENST00000220763	ENST00000603859		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
5UTR-5UTR	ENST00000220763	ENST00000254627		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
5UTR-5UTR	ENST00000220763	ENST00000262283		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
intron-5UTR	ENST00000529551	ENST00000443356		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
intron-5UTR	ENST00000529551	ENST00000603859		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
intron-5UTR	ENST00000529551	ENST00000254627		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
intron-5UTR	ENST00000529551	ENST00000262283		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	CPQ	chr8	97657630	+	OC90	chr8	133067320	-
In-frame	ENST00000584601	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
5CDS-5UTR	ENST00000583610	ENST00000378079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	FBXL20	chr17	37438982	-	FBXO47	chr17	37119304	-
5CDS-5UTR	ENST00000394294	ENST00000378079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	FBXL20	chr17	37438982	-	FBXO47	chr17	37119304	-
5CDS-5UTR	ENST00000264658	ENST00000378079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	FBXL20	chr17	37438982	-	FBXO47	chr17	37119304	-
5CDS-5UTR	ENST00000577399	ENST00000378079		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	FBXL20	chr17	37438982	-	FBXO47	chr17	37119304	-
Frame-shit	ENST00000225927	ENST00000583610		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	NAGLU	chr17	40690773	+	FBXL20	chr17	37431353	-
Frame-shit	ENST00000225927	ENST00000394294		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	NAGLU	chr17	40690773	+	FBXL20	chr17	37431353	-
Frame-shit	ENST00000225927	ENST00000264658		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	NAGLU	chr17	40690773	+	FBXL20	chr17	37431353	-
Frame-shit	ENST00000225927	ENST00000577399		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	NAGLU	chr17	40690773	+	FBXL20	chr17	37431353	-
intron-5UTR	ENST00000408388	ENST00000521243		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118159058	+
intron-3UTR	ENST00000408388	ENST00000521035		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000408388	ENST00000427715		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000408388	ENST00000519688		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118159058	+
intron-intron	ENST00000408388	ENST00000456015		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	PVT1	chr8	128806980	+	SLC30A8	chr8	118159058	+
5UTR-5UTR	ENST00000251849	ENST00000478513		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000251849	ENST00000341795		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000251849	ENST00000317371		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000251849	ENST00000415132		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000251849	ENST00000544814		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-5UTR	ENST00000442415	ENST00000478513		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000442415	ENST00000341795		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000442415	ENST00000317371		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000442415	ENST00000415132		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000442415	ENST00000544814		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
intron-5UTR	ENST00000534997	ENST00000478513		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
intron-intron	ENST00000534997	ENST00000341795		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
intron-intron	ENST00000534997	ENST00000317371		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
intron-intron	ENST00000534997	ENST00000415132		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
intron-intron	ENST00000534997	ENST00000544814		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-5UTR	ENST00000542177	ENST00000478513		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000542177	ENST00000341795		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000542177	ENST00000317371		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000542177	ENST00000415132		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-intron	ENST00000542177	ENST00000544814		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	RAF1	chr3	12705312	-	SSUH2	chr3	8784288	-
5UTR-3CDS	ENST00000269187	ENST00000207157		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	SLC39A6	chr18	33709077	-	TBX15	chr1	119441748	-
5UTR-3CDS	ENST00000269187	ENST00000369429		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	SLC39A6	chr18	33709077	-	TBX15	chr1	119441748	-
intron-3CDS	ENST00000590986	ENST00000207157		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	SLC39A6	chr18	33709077	-	TBX15	chr1	119441748	-
intron-3CDS	ENST00000590986	ENST00000369429		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	SLC39A6	chr18	33709077	-	TBX15	chr1	119441748	-
5UTR-3CDS	ENST00000440549	ENST00000207157		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	SLC39A6	chr18	33709077	-	TBX15	chr1	119441748	-
5UTR-3CDS	ENST00000440549	ENST00000369429		TCGA	LD	BRCA	TCGA-C8-A12Z-01A	SLC39A6	chr18	33709077	-	TBX15	chr1	119441748	-
5CDS-intron	ENST00000223642	ENST00000464873		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
5CDS-intron	ENST00000223642	ENST00000322623		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
5CDS-intron	ENST00000223642	ENST00000417360		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
5CDS-intron	ENST00000223642	ENST00000480616		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
intron-intron	ENST00000466280	ENST00000464873		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
intron-intron	ENST00000466280	ENST00000322623		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
intron-intron	ENST00000466280	ENST00000417360		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
intron-intron	ENST00000466280	ENST00000480616		TCGA	LD	BRCA	TCGA-C8-A130-01A	C5	chr9	123716008	-	RUVBL1	chr3	127801417	-
5CDS-5UTR	ENST00000225941	ENST00000336308		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000225941	ENST00000578232		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225941	ENST00000544210		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225941	ENST00000394250		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225941	ENST00000580611		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000419580	ENST00000336308		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000419580	ENST00000578232		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000419580	ENST00000544210		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000419580	ENST00000394250		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000419580	ENST00000580611		TCGA	LD	BRCA	TCGA-C8-A132-01A	ABI3	chr17	47297315	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000372159	ENST00000477396		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
5CDS-5UTR	ENST00000372159	ENST00000298545		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000372153	ENST00000477396		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000372153	ENST00000298545		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
5CDS-5UTR	ENST00000438527	ENST00000477396		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
5CDS-5UTR	ENST00000438527	ENST00000298545		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000310532	ENST00000477396		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000310532	ENST00000298545		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000480876	ENST00000477396		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000480876	ENST00000298545		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000544003	ENST00000477396		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
intron-5UTR	ENST00000544003	ENST00000298545		TCGA	LD	BRCA	TCGA-C8-A132-01A	DDX31	chr9	135501051	-	AK8	chr9	135602921	-
Frame-shit	ENST00000584601	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000584601	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000406381	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000406381	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000541774	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000541774	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000445658	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000445658	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000540147	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000540147	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000584450	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000584450	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000269571	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
Frame-shit	ENST00000269571	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
intron-3CDS	ENST00000578199	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
intron-3CDS	ENST00000578199	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
intron-3CDS	ENST00000540042	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
intron-3CDS	ENST00000540042	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
intron-3CDS	ENST00000584888	ENST00000225941		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
intron-3CDS	ENST00000584888	ENST00000419580		TCGA	LD	BRCA	TCGA-C8-A132-01A	ERBB2	chr17	37882106	+	ABI3	chr17	47293893	+
In-frame	ENST00000396472	ENST00000538872		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000396472	ENST00000326261		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000396472	ENST00000382841		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
5CDS-intron	ENST00000396472	ENST00000537151		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000382406	ENST00000538872		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000382406	ENST00000326261		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000382406	ENST00000382841		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
5CDS-intron	ENST00000382406	ENST00000537151		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000280987	ENST00000538872		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000280987	ENST00000326261		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
In-frame	ENST00000280987	ENST00000382841		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
5CDS-intron	ENST00000280987	ENST00000537151		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
intron-3CDS	ENST00000554052	ENST00000538872		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
intron-3CDS	ENST00000554052	ENST00000326261		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
intron-3CDS	ENST00000554052	ENST00000382841		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
intron-intron	ENST00000554052	ENST00000537151		TCGA	LD	BRCA	TCGA-C8-A132-01A	FAM177A1	chr14	35546422	+	IQSEC3	chr12	271092	+
Frame-shit	ENST00000394287	ENST00000312513		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED1	chr17	37599803	-	MRPL45	chr17	36454415	+
Frame-shit	ENST00000300651	ENST00000312513		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED1	chr17	37599803	-	MRPL45	chr17	36454415	+
In-frame	ENST00000394287	ENST00000172229		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED1	chr17	37604051	-	NGFR	chr17	47579425	+
5CDS-5UTR	ENST00000394287	ENST00000504201		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED1	chr17	37604051	-	NGFR	chr17	47579425	+
In-frame	ENST00000300651	ENST00000172229		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED1	chr17	37604051	-	NGFR	chr17	47579425	+
5CDS-5UTR	ENST00000300651	ENST00000504201		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED1	chr17	37604051	-	NGFR	chr17	47579425	+
Frame-shit	ENST00000263390	ENST00000427170		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED26	chr19	16738683	-	CERS1	chr19	18995076	-
Frame-shit	ENST00000263390	ENST00000429504		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED26	chr19	16738683	-	CERS1	chr19	18995076	-
Frame-shit	ENST00000263390	ENST00000542296		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED26	chr19	16738683	-	CERS1	chr19	18995076	-
5CDS-5UTR	ENST00000263390	ENST00000247005		TCGA	LD	BRCA	TCGA-C8-A132-01A	MED26	chr19	16738683	-	GDF1	chr19	18995076	-
intron-3CDS	ENST00000536774	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
5UTR-3CDS	ENST00000327441	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000539062	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000556451	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
5UTR-3CDS	ENST00000396294	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000545536	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000537471	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000539174	ENST00000264645		TCGA	LD	BRCA	TCGA-C8-A132-01A	MIPOL1	chr14	37697043	+	CASC3	chr17	38318006	+
Frame-shit	ENST00000380338	ENST00000439660		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000380338	ENST00000578573		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5UTR-3CDS	ENST00000355930	ENST00000439660		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5UTR-3UTR	ENST00000355930	ENST00000578573		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
Frame-shit	ENST00000429426	ENST00000439660		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000429426	ENST00000578573		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5UTR-3CDS	ENST00000475957	ENST00000439660		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5UTR-3UTR	ENST00000475957	ENST00000578573		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
intron-3CDS	ENST00000380321	ENST00000439660		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
intron-3UTR	ENST00000380321	ENST00000578573		TCGA	LD	BRCA	TCGA-C8-A132-01A	MLLT3	chr9	20620653	-	CISD3	chr17	36887013	+
5CDS-intron	ENST00000269554	ENST00000378137		TCGA	LD	BRCA	TCGA-C8-A132-01A	PIP4K2B	chr17	36933940	-	MLLT6	chr17	36875770	+
5CDS-intron	ENST00000269554	ENST00000325718		TCGA	LD	BRCA	TCGA-C8-A132-01A	PIP4K2B	chr17	36933940	-	MLLT6	chr17	36875770	+
5CDS-intron	ENST00000269554	ENST00000579179		TCGA	LD	BRCA	TCGA-C8-A132-01A	PIP4K2B	chr17	36933940	-	MLLT6	chr17	36875770	+
5UTR-intron	ENST00000311500	ENST00000378137		TCGA	LD	BRCA	TCGA-C8-A132-01A	PIP4K2B	chr17	36933940	-	MLLT6	chr17	36875770	+
5UTR-intron	ENST00000311500	ENST00000325718		TCGA	LD	BRCA	TCGA-C8-A132-01A	PIP4K2B	chr17	36933940	-	MLLT6	chr17	36875770	+
5UTR-intron	ENST00000311500	ENST00000579179		TCGA	LD	BRCA	TCGA-C8-A132-01A	PIP4K2B	chr17	36933940	-	MLLT6	chr17	36875770	+
Frame-shit	ENST00000225426	ENST00000240364		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMB3	chr17	36912243	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000225426	ENST00000513602		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMB3	chr17	36912243	+	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000225426	ENST00000514018		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMB3	chr17	36912243	+	FAM117A	chr17	47810082	-
5CDS-intron	ENST00000310118	ENST00000324557		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000310118	ENST00000402825		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000310118	ENST00000359140		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000310118	ENST00000404464		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000310118	ENST00000357474		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000435761	ENST00000324557		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000435761	ENST00000402825		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000435761	ENST00000359140		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000435761	ENST00000404464		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000435761	ENST00000357474		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000439383	ENST00000324557		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000439383	ENST00000402825		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000439383	ENST00000359140		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000439383	ENST00000404464		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
5CDS-intron	ENST00000439383	ENST00000357474		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
intron-intron	ENST00000459910	ENST00000324557		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
intron-intron	ENST00000459910	ENST00000402825		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
intron-intron	ENST00000459910	ENST00000359140		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
intron-intron	ENST00000459910	ENST00000404464		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
intron-intron	ENST00000459910	ENST00000357474		TCGA	LD	BRCA	TCGA-C8-A132-01A	PSMD2	chr3	184022179	+	ECE2	chr3	184005625	+
Frame-shit	ENST00000456989	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000456989	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000544503	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544503	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000264644	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000264644	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-3CDS	ENST00000540388	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000540388	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000436615	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000436615	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A132-01A	RAPGEFL1	chr17	38347014	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000273590	ENST00000356401		TCGA	LD	BRCA	TCGA-C8-A132-01A	TCTA	chr3	49450543	+	ARIH2	chr3	49019093	+
Frame-shit	ENST00000273590	ENST00000449376		TCGA	LD	BRCA	TCGA-C8-A132-01A	TCTA	chr3	49450543	+	ARIH2	chr3	49019093	+
5CDS-intron	ENST00000273590	ENST00000490095		TCGA	LD	BRCA	TCGA-C8-A132-01A	TCTA	chr3	49450543	+	ARIH2	chr3	49019093	+
3UTR-3CDS	ENST00000493381	ENST00000356401		TCGA	LD	BRCA	TCGA-C8-A132-01A	TCTA	chr3	49450543	+	ARIH2	chr3	49019093	+
3UTR-3CDS	ENST00000493381	ENST00000449376		TCGA	LD	BRCA	TCGA-C8-A132-01A	TCTA	chr3	49450543	+	ARIH2	chr3	49019093	+
3UTR-intron	ENST00000493381	ENST00000490095		TCGA	LD	BRCA	TCGA-C8-A132-01A	TCTA	chr3	49450543	+	ARIH2	chr3	49019093	+
In-frame	ENST00000381792	ENST00000393271		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
In-frame	ENST00000381792	ENST00000338165		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
In-frame	ENST00000381792	ENST00000511648		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000346753	ENST00000393271		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000346753	ENST00000338165		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000346753	ENST00000511648		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000406725	ENST00000393271		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000406725	ENST00000338165		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000406725	ENST00000511648		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000406856	ENST00000393271		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000406856	ENST00000338165		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000406856	ENST00000511648		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000442782	ENST00000393271		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000442782	ENST00000338165		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
Frame-shit	ENST00000442782	ENST00000511648		TCGA	LD	BRCA	TCGA-C8-A132-01A	TMPRSS6	chr22	37485618	-	EME1	chr17	48455956	+
3UTR-3CDS	ENST00000494757	ENST00000309156		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-3CDS	ENST00000494757	ENST00000309185		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-3CDS	ENST00000494757	ENST00000394211		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-intron	ENST00000494757	ENST00000578702		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-intron	ENST00000494757	ENST00000445327		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-intron	ENST00000494757	ENST00000394209		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-intron	ENST00000494757	ENST00000394204		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000323571	ENST00000309156		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000323571	ENST00000309185		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000323571	ENST00000394211		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000323571	ENST00000578702		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000323571	ENST00000445327		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000323571	ENST00000394209		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000323571	ENST00000394204		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000585043	ENST00000309156		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000585043	ENST00000309185		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000585043	ENST00000394211		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000585043	ENST00000578702		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000585043	ENST00000445327		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000585043	ENST00000394209		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000585043	ENST00000394204		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000394103	ENST00000309156		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000394103	ENST00000309185		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000394103	ENST00000394211		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000394103	ENST00000578702		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000394103	ENST00000445327		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000394103	ENST00000394209		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000394103	ENST00000394204		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000536600	ENST00000309156		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000536600	ENST00000309185		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-3CDS	ENST00000536600	ENST00000394211		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000536600	ENST00000578702		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000536600	ENST00000445327		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000536600	ENST00000394209		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
5UTR-intron	ENST00000536600	ENST00000394204		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-3CDS	ENST00000583130	ENST00000309156		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-3CDS	ENST00000583130	ENST00000309185		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-3CDS	ENST00000583130	ENST00000394211		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-intron	ENST00000583130	ENST00000578702		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-intron	ENST00000583130	ENST00000445327		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-intron	ENST00000583130	ENST00000394209		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
intron-intron	ENST00000583130	ENST00000394204		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	GRB7	chr17	37901139	+
3UTR-5UTR	ENST00000494757	ENST00000216223		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	IL2RB	chr22	37540245	-
5UTR-5UTR	ENST00000323571	ENST00000216223		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	IL2RB	chr22	37540245	-
5UTR-5UTR	ENST00000585043	ENST00000216223		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	IL2RB	chr22	37540245	-
5UTR-5UTR	ENST00000394103	ENST00000216223		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	IL2RB	chr22	37540245	-
5UTR-5UTR	ENST00000536600	ENST00000216223		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	IL2RB	chr22	37540245	-
intron-5UTR	ENST00000583130	ENST00000216223		TCGA	LD	BRCA	TCGA-C8-A132-01A	WIPF2	chr17	38375744	+	IL2RB	chr22	37540245	-
Frame-shit	ENST00000310864	ENST00000464873		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
5CDS-intron	ENST00000310864	ENST00000322623		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
5CDS-intron	ENST00000310864	ENST00000417360		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
5CDS-intron	ENST00000310864	ENST00000480616		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
Frame-shit	ENST00000349820	ENST00000464873		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
5CDS-intron	ENST00000349820	ENST00000322623		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
5CDS-intron	ENST00000349820	ENST00000417360		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
5CDS-intron	ENST00000349820	ENST00000480616		TCGA	LD	BRCA	TCGA-C8-A134-01A	IQCB1	chr3	121544898	-	RUVBL1	chr3	127784063	-
In-frame	ENST00000393561	ENST00000474629		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
5CDS-intron	ENST00000393561	ENST00000475640		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
Frame-shit	ENST00000222399	ENST00000474629		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
5CDS-intron	ENST00000222399	ENST00000475640		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
Frame-shit	ENST00000393560	ENST00000474629		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
5CDS-intron	ENST00000393560	ENST00000475640		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
intron-3CDS	ENST00000474380	ENST00000474629		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
intron-intron	ENST00000474380	ENST00000475640		TCGA	LD	BRCA	TCGA-C8-A134-01A	LAMB1	chr7	107635332	-	PARP14	chr3	122446659	+
Frame-shit	ENST00000294016	ENST00000577031		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
5CDS-intron	ENST00000294016	ENST00000318059		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
5CDS-intron	ENST00000294016	ENST00000573553		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
5CDS-intron	ENST00000294016	ENST00000575848		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
5CDS-intron	ENST00000294016	ENST00000571941		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
5CDS-intron	ENST00000294016	ENST00000576217		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
5CDS-intron	ENST00000294016	ENST00000575942		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-3CDS	ENST00000571889	ENST00000577031		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-intron	ENST00000571889	ENST00000318059		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-intron	ENST00000571889	ENST00000573553		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-intron	ENST00000571889	ENST00000575848		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-intron	ENST00000571889	ENST00000571941		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-intron	ENST00000571889	ENST00000576217		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-intron	ENST00000571889	ENST00000575942		TCGA	LD	BRCA	TCGA-C8-A135-01A	ADCY9	chr16	4163751	-	PAM16	chr16	4381775	-
intron-3CDS	ENST00000582783	ENST00000595483		TCGA	LD	BRCA	TCGA-C8-A135-01A	C19orf47	chr19	40827935	-	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000582783	ENST00000263368		TCGA	LD	BRCA	TCGA-C8-A135-01A	C19orf47	chr19	40827935	-	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000392035	ENST00000595483		TCGA	LD	BRCA	TCGA-C8-A135-01A	C19orf47	chr19	40827935	-	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000392035	ENST00000263368		TCGA	LD	BRCA	TCGA-C8-A135-01A	C19orf47	chr19	40827935	-	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000584868	ENST00000595483		TCGA	LD	BRCA	TCGA-C8-A135-01A	C19orf47	chr19	40827935	-	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000584868	ENST00000263368		TCGA	LD	BRCA	TCGA-C8-A135-01A	C19orf47	chr19	40827935	-	BLVRB	chr19	40964452	-
In-frame	ENST00000394303	ENST00000279387		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
In-frame	ENST00000394303	ENST00000561610		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
In-frame	ENST00000394310	ENST00000279387		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
In-frame	ENST00000394310	ENST00000561610		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
In-frame	ENST00000344140	ENST00000279387		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
In-frame	ENST00000344140	ENST00000561610		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
intron-3CDS	ENST00000582877	ENST00000279387		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
intron-3CDS	ENST00000582877	ENST00000561610		TCGA	LD	BRCA	TCGA-C8-A135-01A	CACNB1	chr17	37339966	-	PPP4C	chr16	30094715	+
intron-3CDS	ENST00000520367	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000520367	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000520367	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000520367	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000520367	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000518137	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000518137	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000518137	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000518137	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000518137	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000523999	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000523999	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000523999	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000523999	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000523999	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000323854	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000323854	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000323854	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000323854	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000323854	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000522751	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000522751	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000522751	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000522751	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000522751	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000520284	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000520284	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000520284	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000520284	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000520284	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000517795	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000517795	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000517795	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000517795	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000517795	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000518907	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000518907	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000518907	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000518907	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000518907	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
3UTR-3CDS	ENST00000521847	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
3UTR-3CDS	ENST00000521847	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
3UTR-3CDS	ENST00000521847	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
3UTR-intron	ENST00000521847	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
3UTR-intron	ENST00000521847	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000518644	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000518644	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000518644	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000518644	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000518644	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000518901	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000518901	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000518901	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000518901	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-intron	ENST00000518901	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000517295	ENST00000361193		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000517295	ENST00000411502		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-3CDS	ENST00000517295	ENST00000546047		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000517295	ENST00000571602		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
intron-intron	ENST00000517295	ENST00000572725		TCGA	LD	BRCA	TCGA-C8-A135-01A	ENDOV	chr17	78389410	+	SLC26A11	chr17	78210727	+
5UTR-3CDS	ENST00000342129	ENST00000298585		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000342129	ENST00000471957		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-3CDS	ENST00000340951	ENST00000298585		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000340951	ENST00000471957		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-3CDS	ENST00000479452	ENST00000298585		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000479452	ENST00000471957		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-3CDS	ENST00000475006	ENST00000298585		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000475006	ENST00000471957		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-3CDS	ENST00000465160	ENST00000298585		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000465160	ENST00000471957		TCGA	LD	BRCA	TCGA-C8-A135-01A	EXD3	chr9	140317566	-	ZMYND19	chr9	140483170	-
5CDS-5UTR	ENST00000583610	ENST00000392446		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000583610	ENST00000302345		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000583610	ENST00000591773		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-intron	ENST00000583610	ENST00000591732		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000394294	ENST00000392446		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000394294	ENST00000302345		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000394294	ENST00000591773		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-intron	ENST00000394294	ENST00000591732		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000264658	ENST00000392446		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000264658	ENST00000302345		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000264658	ENST00000591773		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-intron	ENST00000264658	ENST00000591732		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000577399	ENST00000392446		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000577399	ENST00000302345		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-5UTR	ENST00000577399	ENST00000591773		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-intron	ENST00000577399	ENST00000591732		TCGA	LD	BRCA	TCGA-C8-A135-01A	FBXL20	chr17	37499433	-	CANT1	chr17	76994045	-
5CDS-intron	ENST00000357559	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000357559	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000357559	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000357559	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000357559	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000357559	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5UTR-intron	ENST00000305586	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5UTR-intron	ENST00000305586	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5UTR-intron	ENST00000305586	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5UTR-intron	ENST00000305586	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5UTR-intron	ENST00000305586	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5UTR-intron	ENST00000305586	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491674	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491674	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491674	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491674	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491674	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491674	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491062	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491062	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491062	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491062	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491062	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000491062	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000468861	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000468861	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000468861	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000468861	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000468861	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
intron-intron	ENST00000468861	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000445140	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000445140	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000445140	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000445140	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000445140	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000445140	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000480918	ENST00000406091		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000480918	ENST00000262231		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000480918	ENST00000507740		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000480918	ENST00000522174		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000480918	ENST00000436393		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-intron	ENST00000480918	ENST00000339750		TCGA	LD	BRCA	TCGA-C8-A135-01A	FXR1	chr3	180651174	+	RIMS2	chr8	105080740	+
5CDS-5UTR	ENST00000330574	ENST00000393946		TCGA	LD	BRCA	TCGA-C8-A135-01A	INTS5	chr11	62420642	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000330574	ENST00000525457		TCGA	LD	BRCA	TCGA-C8-A135-01A	INTS5	chr11	62420642	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000330574	ENST00000527043		TCGA	LD	BRCA	TCGA-C8-A135-01A	INTS5	chr11	62420642	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000330574	ENST00000526281		TCGA	LD	BRCA	TCGA-C8-A135-01A	INTS5	chr11	62420642	-	SYT12	chr11	66789340	+
In-frame	ENST00000505658	ENST00000395811		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000505658	ENST00000444976		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000505658	ENST00000395804		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000505658	ENST00000341712		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-intron	ENST00000505658	ENST00000395806		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-3UTR	ENST00000505658	ENST00000395807		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000393227	ENST00000395811		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000393227	ENST00000444976		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000393227	ENST00000395804		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000393227	ENST00000341712		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-intron	ENST00000393227	ENST00000395806		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-3UTR	ENST00000393227	ENST00000395807		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000311571	ENST00000395811		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000311571	ENST00000444976		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000311571	ENST00000395804		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000311571	ENST00000341712		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-intron	ENST00000311571	ENST00000395806		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-3UTR	ENST00000311571	ENST00000395807		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000240304	ENST00000395811		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000240304	ENST00000444976		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000240304	ENST00000395804		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
In-frame	ENST00000240304	ENST00000341712		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-intron	ENST00000240304	ENST00000395806		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5CDS-3UTR	ENST00000240304	ENST00000395807		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5UTR-3CDS	ENST00000544170	ENST00000395811		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5UTR-3CDS	ENST00000544170	ENST00000444976		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5UTR-3CDS	ENST00000544170	ENST00000395804		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5UTR-3CDS	ENST00000544170	ENST00000341712		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5UTR-intron	ENST00000544170	ENST00000395806		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
5UTR-3UTR	ENST00000544170	ENST00000395807		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000503798	ENST00000395811		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000503798	ENST00000444976		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000503798	ENST00000395804		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000503798	ENST00000341712		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
intron-intron	ENST00000503798	ENST00000395806		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
intron-3UTR	ENST00000503798	ENST00000395807		TCGA	LD	BRCA	TCGA-C8-A135-01A	LUC7L3	chr17	48797192	+	MPRIP	chr17	16979024	+
Frame-shit	ENST00000416426	ENST00000308249		TCGA	LD	BRCA	TCGA-C8-A135-01A	MSI2	chr17	55339553	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000284073	ENST00000308249		TCGA	LD	BRCA	TCGA-C8-A135-01A	MSI2	chr17	55339553	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000322684	ENST00000308249		TCGA	LD	BRCA	TCGA-C8-A135-01A	MSI2	chr17	55339553	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000442934	ENST00000308249		TCGA	LD	BRCA	TCGA-C8-A135-01A	MSI2	chr17	55339553	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000579180	ENST00000308249		TCGA	LD	BRCA	TCGA-C8-A135-01A	MSI2	chr17	55339553	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000579505	ENST00000308249		TCGA	LD	BRCA	TCGA-C8-A135-01A	MSI2	chr17	55339553	+	PPM1E	chr17	57033010	+
In-frame	ENST00000359428	ENST00000581396		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000359428	ENST00000379504		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000359428	ENST00000318094		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000359428	ENST00000395739		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000359428	ENST00000535933		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000359428	ENST00000540946		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000359428	ENST00000542206		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000359428	ENST00000478943		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000359428	ENST00000577517		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000581396		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000379504		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000318094		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000395739		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000535933		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000540946		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000411637	ENST00000542206		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000411637	ENST00000478943		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000411637	ENST00000577517		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000581396		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000379504		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000318094		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000395739		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000535933		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000540946		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000451030	ENST00000542206		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000451030	ENST00000478943		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000451030	ENST00000577517		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000581396		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000379504		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000318094		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000395739		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000535933		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000540946		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
In-frame	ENST00000483497	ENST00000542206		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000483497	ENST00000478943		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
5CDS-intron	ENST00000483497	ENST00000577517		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000581396		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000379504		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000318094		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000395739		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000535933		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000540946		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-3CDS	ENST00000465486	ENST00000542206		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-intron	ENST00000465486	ENST00000478943		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
3UTR-intron	ENST00000465486	ENST00000577517		TCGA	LD	BRCA	TCGA-C8-A135-01A	NUP214	chr9	134072803	+	TOM1L2	chr17	17810845	-
Frame-shit	ENST00000320580	ENST00000526986		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
In-frame	ENST00000320580	ENST00000310442		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
5CDS-5UTR	ENST00000320580	ENST00000525925		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000529757	ENST00000526986		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000529757	ENST00000310442		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-5UTR	ENST00000529757	ENST00000525925		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000524815	ENST00000526986		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-3CDS	ENST00000524815	ENST00000310442		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
intron-5UTR	ENST00000524815	ENST00000525925		TCGA	LD	BRCA	TCGA-C8-A135-01A	PACS1	chr11	65838313	+	ZDHHC24	chr11	66311452	-
Frame-shit	ENST00000395782	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000395782	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
Frame-shit	ENST00000395783	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000395783	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
In-frame	ENST00000435340	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000435340	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
In-frame	ENST00000255389	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000255389	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
In-frame	ENST00000395781	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000395781	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
intron-3CDS	ENST00000484838	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
intron-intron	ENST00000484838	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A135-01A	PEMT	chr17	17480234	-	PRKCA	chr17	64637473	+
In-frame	ENST00000262043	ENST00000368494		TCGA	LD	BRCA	TCGA-C8-A135-01A	PHF3	chr6	64356700	+	NUS1	chr6	118014205	+
In-frame	ENST00000509330	ENST00000368494		TCGA	LD	BRCA	TCGA-C8-A135-01A	PHF3	chr6	64356700	+	NUS1	chr6	118014205	+
In-frame	ENST00000393387	ENST00000368494		TCGA	LD	BRCA	TCGA-C8-A135-01A	PHF3	chr6	64356700	+	NUS1	chr6	118014205	+
intron-3CDS	ENST00000420043	ENST00000368494		TCGA	LD	BRCA	TCGA-C8-A135-01A	PHF3	chr6	64356700	+	NUS1	chr6	118014205	+
5CDS-intron	ENST00000262741	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000262741	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000372006	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000372006	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
intron-intron	ENST00000340332	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
intron-intron	ENST00000340332	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000420542	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000420542	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000354242	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000354242	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000540385	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000540385	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000423209	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5CDS-intron	ENST00000423209	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
intron-intron	ENST00000488808	ENST00000343304		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
intron-intron	ENST00000488808	ENST00000472710		TCGA	LD	BRCA	TCGA-C8-A135-01A	PIK3R3	chr1	46546314	-	LRRC41	chr1	46733349	-
5UTR-intron	ENST00000393038	ENST00000299341		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000393038	ENST00000376352		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000393038	ENST00000405898		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000393038	ENST00000434978		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000393038	ENST00000398391		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000537860	ENST00000299341		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000537860	ENST00000376352		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000537860	ENST00000405898		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000537860	ENST00000434978		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000537860	ENST00000398391		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000409433	ENST00000299341		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000409433	ENST00000376352		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000409433	ENST00000405898		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000409433	ENST00000434978		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000409433	ENST00000398391		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
intron-intron	ENST00000470557	ENST00000299341		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
intron-intron	ENST00000470557	ENST00000376352		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
intron-intron	ENST00000470557	ENST00000405898		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
intron-intron	ENST00000470557	ENST00000434978		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
intron-intron	ENST00000470557	ENST00000398391		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000579915	ENST00000299341		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000579915	ENST00000376352		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000579915	ENST00000405898		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000579915	ENST00000434978		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000579915	ENST00000398391		TCGA	LD	BRCA	TCGA-C8-A135-01A	PTRH2	chr17	57784732	-	STXBP4	chr17	53218671	+
5UTR-intron	ENST00000336308	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000336308	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
3UTR-intron	ENST00000578232	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000544210	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000394250	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000346872		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000394189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000439167		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000535189		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000377944		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000377945		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000377952		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000377958		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000346243		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000350532		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000351680		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000467757		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000439016		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000580611	ENST00000583368		TCGA	LD	BRCA	TCGA-C8-A135-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000397517	ENST00000344691		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000325074		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000437180		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000300305		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000399240		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000486278		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000494829		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000397517	ENST00000358356		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000344691		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000325074		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000437180		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000300305		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000399240		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000486278		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000494829		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000539966	ENST00000358356		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000344691		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000325074		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000437180		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000300305		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000399240		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000486278		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000494829		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5UTR-intron	ENST00000481288	ENST00000358356		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000344691		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000325074		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000437180		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000300305		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000399240		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000486278		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000494829		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
5CDS-intron	ENST00000376547	ENST00000358356		TCGA	LD	BRCA	TCGA-C8-A135-01A	STK24	chr13	99171497	-	RUNX1	chr21	36953227	-
In-frame	ENST00000409262	ENST00000409561		TCGA	LD	BRCA	TCGA-C8-A135-01A	TET3	chr2	74275538	+	C2orf78	chr2	74040604	+
In-frame	ENST00000378312	ENST00000346672		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
In-frame	ENST00000378312	ENST00000360962		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000378312	ENST00000527634		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000378312	ENST00000540737		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000378312	ENST00000532565		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000378312	ENST00000525449		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-3UTR	ENST00000378312	ENST00000527368		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
In-frame	ENST00000278422	ENST00000346672		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
In-frame	ENST00000278422	ENST00000360962		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000278422	ENST00000527634		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000278422	ENST00000540737		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000278422	ENST00000532565		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-5UTR	ENST00000278422	ENST00000525449		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
5CDS-3UTR	ENST00000278422	ENST00000527368		TCGA	LD	BRCA	TCGA-C8-A135-01A	TMX2	chr11	57480279	+	C11orf80	chr11	66563752	+
In-frame	ENST00000397906	ENST00000307790		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
In-frame	ENST00000397906	ENST00000397771		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
In-frame	ENST00000397906	ENST00000542393		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
5CDS-intron	ENST00000397906	ENST00000478812		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
intron-3CDS	ENST00000490475	ENST00000307790		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
intron-3CDS	ENST00000490475	ENST00000397771		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
intron-3CDS	ENST00000490475	ENST00000542393		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
intron-intron	ENST00000490475	ENST00000478812		TCGA	LD	BRCA	TCGA-C8-A135-01A	TTC28	chr22	28692186	-	ASCC2	chr22	30186537	-
5CDS-intron	ENST00000300896	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
5CDS-intron	ENST00000300896	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
5CDS-intron	ENST00000592339	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
5CDS-intron	ENST00000592339	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
intron-intron	ENST00000393003	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
intron-intron	ENST00000393003	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
intron-intron	ENST00000586881	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
intron-intron	ENST00000586881	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A135-01A	USP32	chr17	58299770	-	TANC2	chr17	61228631	+
Frame-shit	ENST00000245932	ENST00000252482		TCGA	LD	BRCA	TCGA-C8-A135-01A	VASP	chr19	46011034	+	EXOC3L2	chr19	45721577	-
Frame-shit	ENST00000245932	ENST00000413988		TCGA	LD	BRCA	TCGA-C8-A135-01A	VASP	chr19	46011034	+	EXOC3L2	chr19	45721577	-
3UTR-3CDS	ENST00000586619	ENST00000252482		TCGA	LD	BRCA	TCGA-C8-A135-01A	VASP	chr19	46011034	+	EXOC3L2	chr19	45721577	-
3UTR-3CDS	ENST00000586619	ENST00000413988		TCGA	LD	BRCA	TCGA-C8-A135-01A	VASP	chr19	46011034	+	EXOC3L2	chr19	45721577	-
5UTR-5UTR	ENST00000413658	ENST00000543273		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
5UTR-5UTR	ENST00000413658	ENST00000436886		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
5UTR-5UTR	ENST00000424697	ENST00000543273		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
5UTR-5UTR	ENST00000424697	ENST00000436886		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
intron-5UTR	ENST00000303915	ENST00000543273		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
intron-5UTR	ENST00000303915	ENST00000436886		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
5UTR-5UTR	ENST00000299667	ENST00000543273		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
5UTR-5UTR	ENST00000299667	ENST00000436886		TCGA	LD	BRCA	TCGA-C8-A135-01A	ZNF3	chr7	99679258	-	GATS	chr7	99831297	-
Frame-shit	ENST00000560079	ENST00000448803		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
In-frame	ENST00000560079	ENST00000546148		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000334141		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-5UTR	ENST00000560079	ENST00000358472		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000379358		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000327179		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000541040		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000538076		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000485222		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000560079	ENST00000303310		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
Frame-shit	ENST00000299927	ENST00000448803		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
In-frame	ENST00000299927	ENST00000546148		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000334141		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-5UTR	ENST00000299927	ENST00000358472		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000379358		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000327179		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000541040		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000538076		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000485222		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
5CDS-intron	ENST00000299927	ENST00000303310		TCGA	LD	BRCA	TCGA-C8-A137-01A	ZNF592	chr15	85326045	+	ZSCAN2	chr15	85163833	+
Frame-shit	ENST00000355221	ENST00000423902		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
Frame-shit	ENST00000355221	ENST00000524602		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
Frame-shit	ENST00000355221	ENST00000525508		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
5CDS-intron	ENST00000355221	ENST00000529472		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-3CDS	ENST00000520188	ENST00000423902		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-3CDS	ENST00000520188	ENST00000524602		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-3CDS	ENST00000520188	ENST00000525508		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-intron	ENST00000520188	ENST00000529472		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
Frame-shit	ENST00000359530	ENST00000423902		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
Frame-shit	ENST00000359530	ENST00000524602		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
Frame-shit	ENST00000359530	ENST00000525508		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
5CDS-intron	ENST00000359530	ENST00000529472		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-3CDS	ENST00000523899	ENST00000423902		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-3CDS	ENST00000523899	ENST00000524602		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-3CDS	ENST00000523899	ENST00000525508		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
intron-intron	ENST00000523899	ENST00000529472		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
In-frame	ENST00000396774	ENST00000423902		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
In-frame	ENST00000396774	ENST00000524602		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
In-frame	ENST00000396774	ENST00000525508		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
5CDS-intron	ENST00000396774	ENST00000529472		TCGA	LD	BRCA	TCGA-C8-A138-01A	ATP6V1H	chr8	54754138	-	CHD7	chr8	61693559	+
5UTR-3CDS	ENST00000342572	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000342572	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000342572	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000342572	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000306645	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000306645	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000306645	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000306645	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000437807	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000437807	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000437807	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-intron	ENST00000437807	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000336995	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000336995	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000336995	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000336995	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000434650	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000434650	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000434650	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000434650	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000583617	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000583617	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000583617	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000583617	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000577436	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000577436	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000577436	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-intron	ENST00000577436	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000585064	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000585064	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000585064	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-intron	ENST00000585064	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000577732	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000577732	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-3CDS	ENST00000577732	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-intron	ENST00000577732	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000578919	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000578919	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000578919	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000578919	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000585080	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000585080	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000585080	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000585080	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000578913	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000578913	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000578913	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000578913	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000583359	ENST00000263094		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000583359	ENST00000433129		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-3CDS	ENST00000583359	ENST00000435683		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
5UTR-intron	ENST00000583359	ENST00000533574		TCGA	LD	BRCA	TCGA-C8-A138-01A	C17orf62	chr17	80408576	-	ABCA7	chr19	1048894	+
intron-intron	ENST00000540367	ENST00000441339		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000540367	ENST00000308946		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000540367	ENST00000535407		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000540367	ENST00000541137		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000376618	ENST00000441339		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000376618	ENST00000308946		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000376618	ENST00000535407		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-3UTR	ENST00000376618	ENST00000541137		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000265641	ENST00000441339		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000265641	ENST00000308946		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000265641	ENST00000535407		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
5UTR-3UTR	ENST00000265641	ENST00000541137		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000539743	ENST00000441339		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000539743	ENST00000308946		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000539743	ENST00000535407		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000539743	ENST00000541137		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000537756	ENST00000441339		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000537756	ENST00000308946		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000537756	ENST00000535407		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000537756	ENST00000541137		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000538994	ENST00000441339		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000538994	ENST00000308946		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000538994	ENST00000535407		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000538994	ENST00000541137		TCGA	LD	BRCA	TCGA-C8-A138-01A	CPT1A	chr11	68609243	-	MYEOV	chr11	69156278	+
In-frame	ENST00000311320	ENST00000308831		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
In-frame	ENST00000311320	ENST00000533360		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
5CDS-intron	ENST00000311320	ENST00000532559		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
5UTR-3CDS	ENST00000424433	ENST00000308831		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
5UTR-3CDS	ENST00000424433	ENST00000533360		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
5UTR-intron	ENST00000424433	ENST00000532559		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530056	ENST00000308831		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530056	ENST00000533360		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
intron-intron	ENST00000530056	ENST00000532559		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524804	ENST00000308831		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524804	ENST00000533360		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
intron-intron	ENST00000524804	ENST00000532559		TCGA	LD	BRCA	TCGA-C8-A138-01A	RIN1	chr11	66103788	-	RHOD	chr11	66833367	+
5UTR-3CDS	ENST00000261789	ENST00000339917		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000261789	ENST00000556621		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000261789	ENST00000287913		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000261789	ENST00000428351		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000528669	ENST00000339917		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000528669	ENST00000556621		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000528669	ENST00000287913		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000528669	ENST00000428351		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000556387	ENST00000339917		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000556387	ENST00000556621		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000556387	ENST00000287913		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000556387	ENST00000428351		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000530611	ENST00000339917		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000530611	ENST00000556621		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000530611	ENST00000287913		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
intron-3CDS	ENST00000530611	ENST00000428351		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000524835	ENST00000339917		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000524835	ENST00000556621		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000524835	ENST00000287913		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000524835	ENST00000428351		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000396854	ENST00000339917		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000396854	ENST00000556621		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000396854	ENST00000287913		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000396854	ENST00000428351		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	TM9SF1	chr14	24664552	-	TSSK4	chr14	24677170	+
5UTR-3CDS	ENST00000321287	ENST00000390239		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	ZNF610	chr19	52839698	+	IGKJ4	chr2	89160427	-
5UTR-3CDS	ENST00000403906	ENST00000390239		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	ZNF610	chr19	52839698	+	IGKJ4	chr2	89160427	-
5UTR-3CDS	ENST00000601151	ENST00000390239		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	ZNF610	chr19	52839698	+	IGKJ4	chr2	89160427	-
intron-3CDS	ENST00000327920	ENST00000390239		TCGA	LD	BRCA	TCGA-C8-A1HG-01A	ZNF610	chr19	52839698	+	IGKJ4	chr2	89160427	-
In-frame	ENST00000566423	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000566423	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000566423	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000566423	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000566423	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000249822	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000249822	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000249822	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000249822	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000249822	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000561650	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000561650	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000561650	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000561650	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000561650	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000568196	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000568196	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000568196	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000568196	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000568196	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563277	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563277	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563277	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563277	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563277	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000567669	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000567669	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000567669	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000567669	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000567669	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000569723	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000569723	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000569723	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000569723	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000569723	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000569281	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000569281	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000569281	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000569281	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000569281	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000564163	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000564163	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000564163	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000564163	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
In-frame	ENST00000564163	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563566	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563566	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563566	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563566	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000563566	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000561971	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000561971	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000561971	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000561971	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
Frame-shit	ENST00000561971	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000565288	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000565288	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000565288	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000565288	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
intron-3CDS	ENST00000565288	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ARPP19	chr15	52861045	-	MYO5A	chr15	52615641	-
5CDS-5UTR	ENST00000284509	ENST00000560386		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5CDS-5UTR	ENST00000284509	ENST00000256538		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5CDS-intron	ENST00000284509	ENST00000440392		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5CDS-5UTR	ENST00000559829	ENST00000560386		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5CDS-5UTR	ENST00000559829	ENST00000256538		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5CDS-intron	ENST00000559829	ENST00000440392		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5UTR-5UTR	ENST00000558959	ENST00000560386		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5UTR-5UTR	ENST00000558959	ENST00000256538		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5UTR-intron	ENST00000558959	ENST00000440392		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	ATP8B4	chr15	50330965	-	DPH6	chr15	35674117	-
5CDS-5UTR	ENST00000351904	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-3UTR	ENST00000351904	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-intron	ENST00000351904	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-5UTR	ENST00000245541	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-3UTR	ENST00000245541	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-intron	ENST00000245541	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-5UTR	ENST00000578348	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-3UTR	ENST00000578348	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-intron	ENST00000578348	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-5UTR	ENST00000582486	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-3UTR	ENST00000582486	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-intron	ENST00000582486	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5UTR-5UTR	ENST00000538886	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5UTR-3UTR	ENST00000538886	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5UTR-intron	ENST00000538886	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-5UTR	ENST00000582717	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-3UTR	ENST00000582717	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-intron	ENST00000582717	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-5UTR	ENST00000537686	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-3UTR	ENST00000537686	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
5CDS-intron	ENST00000537686	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-5UTR	ENST00000579743	ENST00000375215		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-3UTR	ENST00000579743	ENST00000581115		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
intron-intron	ENST00000579743	ENST00000537494		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	GGA3	chr17	73257629	-	SMIM5	chr17	73630114	+
Frame-shit	ENST00000361937	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	INO80	chr15	41371899	-	PRKCA	chr17	64728806	+
5CDS-intron	ENST00000361937	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	INO80	chr15	41371899	-	PRKCA	chr17	64728806	+
Frame-shit	ENST00000401393	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	INO80	chr15	41371899	-	PRKCA	chr17	64728806	+
5CDS-intron	ENST00000401393	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	INO80	chr15	41371899	-	PRKCA	chr17	64728806	+
intron-3CDS	ENST00000561244	ENST00000413366		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	INO80	chr15	41371899	-	PRKCA	chr17	64728806	+
intron-intron	ENST00000561244	ENST00000583361		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	INO80	chr15	41371899	-	PRKCA	chr17	64728806	+
Frame-shit	ENST00000338564	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000338564	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000338564	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000338564	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000338564	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000561208	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000561208	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000561208	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000561208	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000561208	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397624	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397624	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397624	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397624	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397624	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000382766	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000382766	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000382766	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000382766	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000382766	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000444725	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000444725	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000444725	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000444725	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000444725	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000340545	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000340545	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000340545	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000340545	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000340545	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000559085	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000559085	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000559085	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000559085	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000559085	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000219869	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000219869	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000219869	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000219869	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000219869	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000557796	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000557796	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000557796	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000557796	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000557796	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397620	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397620	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397620	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397620	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000397620	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000424352	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000424352	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000424352	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000424352	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000424352	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000559561	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000559561	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000559561	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000559561	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
In-frame	ENST00000559561	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
intron-3CDS	ENST00000559408	ENST00000399231		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
intron-3CDS	ENST00000559408	ENST00000356338		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
intron-3CDS	ENST00000559408	ENST00000358212		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
intron-3CDS	ENST00000559408	ENST00000399233		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
intron-3CDS	ENST00000559408	ENST00000553916		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	MEIS2	chr15	37329015	-	MYO5A	chr15	52664560	-
Frame-shit	ENST00000260385	ENST00000330137		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000260385	ENST00000580541		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000260385	ENST00000578105		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000260385	ENST00000583927		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000260385	ENST00000581068		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000260385	ENST00000437036		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000260385	ENST00000583380		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000338376	ENST00000330137		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000338376	ENST00000580541		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
In-frame	ENST00000338376	ENST00000578105		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000338376	ENST00000583927		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000338376	ENST00000581068		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000338376	ENST00000437036		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5CDS-5UTR	ENST00000338376	ENST00000583380		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-3CDS	ENST00000558560	ENST00000330137		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-3CDS	ENST00000558560	ENST00000580541		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-3CDS	ENST00000558560	ENST00000578105		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-5UTR	ENST00000558560	ENST00000583927		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-5UTR	ENST00000558560	ENST00000581068		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-5UTR	ENST00000558560	ENST00000437036		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
5UTR-5UTR	ENST00000558560	ENST00000583380		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	RMDN3	chr15	41043624	-	SKA2	chr17	57189706	-
Frame-shit	ENST00000588847	ENST00000538941		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000588847	ENST00000563290		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000588847	ENST00000324767		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
5CDS-intron	ENST00000588847	ENST00000562890		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000588061	ENST00000538941		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000588061	ENST00000563290		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000588061	ENST00000324767		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
5CDS-intron	ENST00000588061	ENST00000562890		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000335749	ENST00000538941		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000335749	ENST00000563290		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000335749	ENST00000324767		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
5CDS-intron	ENST00000335749	ENST00000562890		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000301624	ENST00000538941		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000301624	ENST00000563290		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000301624	ENST00000324767		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
5CDS-intron	ENST00000301624	ENST00000562890		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000541771	ENST00000538941		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000541771	ENST00000563290		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000541771	ENST00000324767		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
5CDS-intron	ENST00000541771	ENST00000562890		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000544502	ENST00000538941		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000544502	ENST00000563290		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000544502	ENST00000324767		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
5CDS-intron	ENST00000544502	ENST00000562890		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TNRC6C	chr17	76047529	+	SCAPER	chr15	76697020	-
Frame-shit	ENST00000560955	ENST00000335464		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000560955	ENST00000417024		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000560955	ENST00000582773		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000560955	ENST00000582330		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000560955	ENST00000584171		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
Frame-shit	ENST00000313478	ENST00000335464		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000313478	ENST00000417024		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000313478	ENST00000582773		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000313478	ENST00000582330		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000313478	ENST00000584171		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
intron-3CDS	ENST00000561443	ENST00000335464		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
intron-intron	ENST00000561443	ENST00000417024		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
intron-intron	ENST00000561443	ENST00000582773		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
intron-intron	ENST00000561443	ENST00000582330		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
intron-intron	ENST00000561443	ENST00000584171		TCGA	LD	BRCA	TCGA-C8-A1HI-01A	TRPM7	chr15	50949978	-	TMEM104	chr17	72832066	+
Frame-shit	ENST00000306052	ENST00000371494		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000306052	ENST00000488036		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000306052	ENST00000371491		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
Frame-shit	ENST00000371454	ENST00000371494		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000371454	ENST00000488036		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000371454	ENST00000371491		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5UTR-3CDS	ENST00000465675	ENST00000371494		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5UTR-intron	ENST00000465675	ENST00000488036		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5UTR-intron	ENST00000465675	ENST00000371491		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
Frame-shit	ENST00000354412	ENST00000371494		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000354412	ENST00000488036		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000354412	ENST00000371491		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
Frame-shit	ENST00000347547	ENST00000371494		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000347547	ENST00000488036		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
5CDS-intron	ENST00000347547	ENST00000371491		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
intron-3CDS	ENST00000460214	ENST00000371494		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
intron-intron	ENST00000460214	ENST00000488036		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
intron-intron	ENST00000460214	ENST00000371491		TCGA	LD	BRCA	TCGA-C8-A1HJ-01A	LRP8	chr1	53746259	-	SLC1A7	chr1	53600101	-
Frame-shit	ENST00000346798	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000346798	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000346798	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000354192	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000354192	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000354192	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000348990	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000348990	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000348990	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000357903	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000357903	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000357903	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000358918	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000358918	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000358918	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000359726	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000359726	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000359726	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000448388	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000448388	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000448388	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000440126	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000440126	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000440126	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000439274	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000439274	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000439274	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000474136	ENST00000325874		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000474136	ENST00000581280		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000474136	ENST00000394744		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	APP	chr21	27277336	-	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000314073	ENST00000369681		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	GLTSCR1L	chr6	42790741	+	CYB5R4	chr6	84644314	+
5CDS-intron	ENST00000314073	ENST00000369679		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	GLTSCR1L	chr6	42790741	+	CYB5R4	chr6	84644314	+
5CDS-3UTR	ENST00000314073	ENST00000479164		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	GLTSCR1L	chr6	42790741	+	CYB5R4	chr6	84644314	+
Frame-shit	ENST00000394168	ENST00000369681		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	GLTSCR1L	chr6	42790741	+	CYB5R4	chr6	84644314	+
5CDS-intron	ENST00000394168	ENST00000369679		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	GLTSCR1L	chr6	42790741	+	CYB5R4	chr6	84644314	+
5CDS-3UTR	ENST00000394168	ENST00000479164		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	GLTSCR1L	chr6	42790741	+	CYB5R4	chr6	84644314	+
In-frame	ENST00000393799	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000393799	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000393799	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393799	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393799	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393799	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-3CDS	ENST00000530427	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-3CDS	ENST00000530427	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-5UTR	ENST00000530427	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-intron	ENST00000530427	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-intron	ENST00000530427	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-intron	ENST00000530427	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000393800	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000393800	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000393800	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393800	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393800	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393800	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-3CDS	ENST00000534534	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-3CDS	ENST00000534534	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-5UTR	ENST00000534534	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-intron	ENST00000534534	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-intron	ENST00000534534	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-intron	ENST00000534534	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000524845	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000524845	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000524845	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000524845	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000524845	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000524845	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000265637	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000265637	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000265637	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000265637	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000265637	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000265637	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000524904	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000524904	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000524904	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000524904	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000524904	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000524904	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000393801	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000393801	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000393801	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393801	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393801	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000393801	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000265636	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000265636	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000265636	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000265636	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000265636	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000265636	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000529710	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000529710	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000529710	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000529710	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000529710	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000529710	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000527403	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
In-frame	ENST00000527403	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000527403	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000527403	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000527403	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
5CDS-intron	ENST00000527403	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	PPP6R3	chr11	68321725	+	SSH2	chr17	28030080	-
intron-3CDS	ENST00000394670	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394670	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000321233	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000321233	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000394673	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000394673	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000341711	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000341711	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000342555	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000342555	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000577908	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000577908	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000584416	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000584416	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A1HK-01A	ZNF207	chr17	30677371	+	PPP6R3	chr11	68315535	+
3UTR-3CDS	ENST00000413518	ENST00000404771		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000372440		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000372443		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000286628		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000286627		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000354353		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000404857		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-3CDS	ENST00000413518	ENST00000406533		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-intron	ENST00000413518	ENST00000484507		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-intron	ENST00000413518	ENST00000481070		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
3UTR-intron	ENST00000413518	ENST00000480683		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	ERVK3-1	chr19	58817582	+	KCNMA1	chr10	78799395	-
intron-3CDS	ENST00000341217	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000341217	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000341217	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000341217	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000341217	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000581407	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000581407	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000581407	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000581407	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000581407	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582266	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582266	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582266	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582266	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000582266	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000452648	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000452648	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000452648	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000452648	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000452648	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582059	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582059	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582059	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000582059	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000582059	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000583953	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000583953	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000583953	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000583953	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000583953	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000577682	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000577682	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000577682	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-3CDS	ENST00000577682	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
intron-intron	ENST00000577682	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000583522	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000583522	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000583522	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000583522	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-intron	ENST00000583522	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000581381	ENST00000335221		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000581381	ENST00000321892		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000581381	ENST00000306378		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-3CDS	ENST00000581381	ENST00000424123		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
5UTR-intron	ENST00000581381	ENST00000577770		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	FAM222B	chr17	27117396	-	BPTF	chr17	65955657	+
3UTR-5UTR	ENST00000579301	ENST00000504681		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	SMURF2P1	chr17	28927934	+	B4GALNT2	chr17	47218609	+
3UTR-5UTR	ENST00000579301	ENST00000393354		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	SMURF2P1	chr17	28927934	+	B4GALNT2	chr17	47218609	+
3UTR-5UTR	ENST00000579301	ENST00000300404		TCGA	LD	BRCA	TCGA-C8-A1HM-01A	SMURF2P1	chr17	28927934	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000295890	ENST00000513000		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000295890	ENST00000509777		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000295890	ENST00000262992		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000295890	ENST00000308502		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000295890	ENST00000508116		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000295890	ENST00000507861		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000295890	ENST00000506217		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000295890	ENST00000508084		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000507544	ENST00000513000		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000507544	ENST00000509777		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000507544	ENST00000262992		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000507544	ENST00000308502		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000507544	ENST00000508116		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000507544	ENST00000507861		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000507544	ENST00000506217		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000507544	ENST00000508084		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000421792	ENST00000513000		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000421792	ENST00000509777		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000421792	ENST00000262992		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000421792	ENST00000308502		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000421792	ENST00000508116		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000421792	ENST00000507861		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000421792	ENST00000506217		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000421792	ENST00000508084		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	COX18	chr4	73930967	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000361383	ENST00000373448		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5CDS-5UTR	ENST00000361383	ENST00000373447		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5CDS-5UTR	ENST00000361383	ENST00000449821		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5CDS-5UTR	ENST00000361383	ENST00000487362		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5UTR-5UTR	ENST00000405275	ENST00000373448		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5UTR-5UTR	ENST00000405275	ENST00000373447		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5UTR-5UTR	ENST00000405275	ENST00000449821		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
5UTR-5UTR	ENST00000405275	ENST00000487362		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373473	ENST00000373448		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373473	ENST00000373447		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373473	ENST00000449821		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373473	ENST00000487362		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000473857	ENST00000373448		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000473857	ENST00000373447		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000473857	ENST00000449821		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000473857	ENST00000487362		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373469	ENST00000373448		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373469	ENST00000373447		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373469	ENST00000449821		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
intron-5UTR	ENST00000373469	ENST00000487362		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	CTNNBL1	chr20	36322554	+	TTI1	chr20	36642259	-
Frame-shit	ENST00000280333	ENST00000414778		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
Frame-shit	ENST00000280333	ENST00000373965		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
Frame-shit	ENST00000280333	ENST00000395438		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000409834		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395440		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395446		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395442		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395445		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000373957		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395432		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395433		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000361849		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000395430		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000320301		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000437009		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000373955		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000280333	ENST00000463095		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000484400	ENST00000414778		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000484400	ENST00000373965		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000484400	ENST00000395438		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000409834		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395440		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395446		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395442		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395445		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000373957		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395432		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395433		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000361849		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000395430		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000320301		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000437009		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000373955		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
intron-intron	ENST00000484400	ENST00000463095		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DOCK1	chr10	129179632	+	PCDH15	chr10	56287637	-
Frame-shit	ENST00000246069	ENST00000335351		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DSTN	chr20	17550856	+	TCFL5	chr20	61473449	-
5CDS-intron	ENST00000246069	ENST00000217162		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DSTN	chr20	17550856	+	TCFL5	chr20	61473449	-
5UTR-3CDS	ENST00000474024	ENST00000335351		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DSTN	chr20	17550856	+	TCFL5	chr20	61473449	-
5UTR-intron	ENST00000474024	ENST00000217162		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DSTN	chr20	17550856	+	TCFL5	chr20	61473449	-
In-frame	ENST00000357156	ENST00000348547		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000357156	ENST00000357394		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000357156	ENST00000279052		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000357156	ENST00000447986		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
5CDS-intron	ENST00000357156	ENST00000482338		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
3UTR-3CDS	ENST00000480759	ENST00000348547		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
3UTR-3CDS	ENST00000480759	ENST00000357394		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
3UTR-3CDS	ENST00000480759	ENST00000279052		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
3UTR-3CDS	ENST00000480759	ENST00000447986		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
3UTR-intron	ENST00000480759	ENST00000482338		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000417166	ENST00000348547		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000417166	ENST00000357394		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000417166	ENST00000279052		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000417166	ENST00000447986		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
5CDS-intron	ENST00000417166	ENST00000482338		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000300469	ENST00000348547		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000300469	ENST00000357394		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000300469	ENST00000279052		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000300469	ENST00000447986		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
5CDS-intron	ENST00000300469	ENST00000482338		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000374846	ENST00000348547		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000374846	ENST00000357394		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000374846	ENST00000279052		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
In-frame	ENST00000374846	ENST00000447986		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
5CDS-intron	ENST00000374846	ENST00000482338		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	DYNLRB1	chr20	33114148	+	ERGIC3	chr20	34130072	+
Frame-shit	ENST00000338825	ENST00000368679		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	EIF4EBP1	chr8	37888236	+	ADAM12	chr10	127734701	-
Frame-shit	ENST00000338825	ENST00000368676		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	EIF4EBP1	chr8	37888236	+	ADAM12	chr10	127734701	-
5CDS-intron	ENST00000338825	ENST00000467145		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	EIF4EBP1	chr8	37888236	+	ADAM12	chr10	127734701	-
intron-3CDS	ENST00000520657	ENST00000368679		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	EIF4EBP1	chr8	37888236	+	ADAM12	chr10	127734701	-
intron-3CDS	ENST00000520657	ENST00000368676		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	EIF4EBP1	chr8	37888236	+	ADAM12	chr10	127734701	-
intron-intron	ENST00000520657	ENST00000467145		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	EIF4EBP1	chr8	37888236	+	ADAM12	chr10	127734701	-
In-frame	ENST00000308330	ENST00000332707		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LEMD3	chr12	65612399	+	XPOT	chr12	64833024	+
intron-3CDS	ENST00000541171	ENST00000332707		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LEMD3	chr12	65612399	+	XPOT	chr12	64833024	+
Frame-shit	ENST00000353442	ENST00000433971		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
Frame-shit	ENST00000353442	ENST00000345063		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
5CDS-intron	ENST00000353442	ENST00000488841		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
5UTR-3CDS	ENST00000359422	ENST00000433971		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
5UTR-3CDS	ENST00000359422	ENST00000345063		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
5UTR-intron	ENST00000359422	ENST00000488841		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
Frame-shit	ENST00000354505	ENST00000433971		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
Frame-shit	ENST00000354505	ENST00000345063		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
5CDS-intron	ENST00000354505	ENST00000488841		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
Frame-shit	ENST00000540390	ENST00000433971		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
Frame-shit	ENST00000540390	ENST00000345063		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
5CDS-intron	ENST00000540390	ENST00000488841		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000430825	ENST00000433971		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000430825	ENST00000345063		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
intron-intron	ENST00000430825	ENST00000488841		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LMBR1	chr7	156589083	-	TPRG1	chr3	188956522	+
In-frame	ENST00000535741	ENST00000202816		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LRBA	chr4	151719233	-	ESF1	chr20	13699631	-
Frame-shit	ENST00000510413	ENST00000202816		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LRBA	chr4	151719233	-	ESF1	chr20	13699631	-
intron-3CDS	ENST00000503716	ENST00000202816		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LRBA	chr4	151719233	-	ESF1	chr20	13699631	-
In-frame	ENST00000357115	ENST00000202816		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LRBA	chr4	151719233	-	ESF1	chr20	13699631	-
Frame-shit	ENST00000507224	ENST00000202816		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	LRBA	chr4	151719233	-	ESF1	chr20	13699631	-
In-frame	ENST00000217246	ENST00000296550		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
In-frame	ENST00000217246	ENST00000506325		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
In-frame	ENST00000217246	ENST00000302176		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000217246	ENST00000507694		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
In-frame	ENST00000310348	ENST00000296550		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
In-frame	ENST00000310348	ENST00000506325		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
In-frame	ENST00000310348	ENST00000302176		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000310348	ENST00000507694		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000464883	ENST00000296550		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000464883	ENST00000506325		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000464883	ENST00000302176		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-intron	ENST00000464883	ENST00000507694		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000402914	ENST00000296550		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000402914	ENST00000506325		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000402914	ENST00000302176		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-intron	ENST00000402914	ENST00000507694		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000378058	ENST00000296550		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000378058	ENST00000506325		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000378058	ENST00000302176		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-intron	ENST00000378058	ENST00000507694		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000407045	ENST00000296550		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000407045	ENST00000506325		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000407045	ENST00000302176		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
intron-intron	ENST00000407045	ENST00000507694		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	MACROD2	chr20	13983050	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000278780	ENST00000440693		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	OVOL2	chr20	18037301	-	KIAA0922	chr4	154553870	+
Frame-shit	ENST00000278780	ENST00000409663		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	OVOL2	chr20	18037301	-	KIAA0922	chr4	154553870	+
Frame-shit	ENST00000278780	ENST00000409959		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	OVOL2	chr20	18037301	-	KIAA0922	chr4	154553870	+
5UTR-3CDS	ENST00000483661	ENST00000440693		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	OVOL2	chr20	18037301	-	KIAA0922	chr4	154553870	+
5UTR-3CDS	ENST00000483661	ENST00000409663		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	OVOL2	chr20	18037301	-	KIAA0922	chr4	154553870	+
5UTR-3CDS	ENST00000483661	ENST00000409959		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	OVOL2	chr20	18037301	-	KIAA0922	chr4	154553870	+
5CDS-intron	ENST00000371621	ENST00000417961		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371621	ENST00000361573		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5CDS-5UTR	ENST00000371621	ENST00000541138		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371621	ENST00000539601		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371621	ENST00000490250		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5UTR-intron	ENST00000541713	ENST00000417961		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5UTR-intron	ENST00000541713	ENST00000361573		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5UTR-5UTR	ENST00000541713	ENST00000541138		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5UTR-intron	ENST00000541713	ENST00000539601		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
5UTR-intron	ENST00000541713	ENST00000490250		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	PTPN1	chr20	49127127	+	SLC9A8	chr20	48481265	+
Frame-shit	ENST00000373433	ENST00000358602		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
Frame-shit	ENST00000373433	ENST00000509867		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
Frame-shit	ENST00000373433	ENST00000330838		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
5CDS-intron	ENST00000373433	ENST00000514252		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
intron-3CDS	ENST00000471511	ENST00000358602		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
intron-3CDS	ENST00000471511	ENST00000509867		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
intron-3CDS	ENST00000471511	ENST00000330838		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
intron-intron	ENST00000471511	ENST00000514252		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	RPRD1B	chr20	36694658	+	ANKRD17	chr4	73964237	-
3UTR-3UTR	ENST00000261716	ENST00000394670		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000261716	ENST00000321233		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000261716	ENST00000394673		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000261716	ENST00000341711		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000261716	ENST00000342555		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000261716	ENST00000577908		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000261716	ENST00000584416		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-3UTR	ENST00000536202	ENST00000394670		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000536202	ENST00000321233		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000536202	ENST00000394673		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000536202	ENST00000341711		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000536202	ENST00000342555		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000536202	ENST00000577908		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
3UTR-intron	ENST00000536202	ENST00000584416		TCGA	LD	BRCA	TCGA-C8-A1HN-01A	TAOK1	chr17	27871093	+	ZNF207	chr17	30708322	+
In-frame	ENST00000358602	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000358602	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000358602	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000358602	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000358602	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5CDS-5UTR	ENST00000358602	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5CDS-5UTR	ENST00000358602	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000509867	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000509867	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000509867	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000509867	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000509867	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5CDS-5UTR	ENST00000509867	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5CDS-5UTR	ENST00000509867	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000330838	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000330838	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000330838	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000330838	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
In-frame	ENST00000330838	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5CDS-5UTR	ENST00000330838	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5CDS-5UTR	ENST00000330838	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-3CDS	ENST00000514252	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-3CDS	ENST00000514252	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-3CDS	ENST00000514252	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-3CDS	ENST00000514252	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-3CDS	ENST00000514252	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-5UTR	ENST00000514252	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
5UTR-5UTR	ENST00000514252	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	ANKRD17	chr4	73979509	-	KCNIP4	chr4	20736358	-
Frame-shit	ENST00000307078	ENST00000339474		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
Frame-shit	ENST00000307078	ENST00000584306		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
Frame-shit	ENST00000307078	ENST00000400877		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
Frame-shit	ENST00000307078	ENST00000334962		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
Frame-shit	ENST00000307078	ENST00000319651		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
5CDS-intron	ENST00000307078	ENST00000577487		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000375702	ENST00000339474		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000375702	ENST00000584306		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000375702	ENST00000400877		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000375702	ENST00000334962		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000375702	ENST00000319651		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
5CDS-intron	ENST00000375702	ENST00000577487		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	AXIN2	chr17	63537573	-	LRRC37A3	chr17	62852007	-
5UTR-3CDS	ENST00000258947	ENST00000448504		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000258947	ENST00000452479		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3UTR	ENST00000258947	ENST00000582154		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000509507	ENST00000448504		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000509507	ENST00000452479		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3UTR	ENST00000509507	ENST00000582154		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000448105	ENST00000448504		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000448105	ENST00000452479		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3UTR	ENST00000448105	ENST00000582154		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000416445	ENST00000448504		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000416445	ENST00000452479		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3UTR	ENST00000416445	ENST00000582154		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000508679	ENST00000448504		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000508679	ENST00000452479		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5UTR-3UTR	ENST00000508679	ENST00000582154		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
intron-3CDS	ENST00000510997	ENST00000448504		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
intron-3CDS	ENST00000510997	ENST00000452479		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
intron-3UTR	ENST00000510997	ENST00000582154		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	CALCOCO2	chr17	46908440	+	ARSG	chr17	66416330	+
5CDS-5UTR	ENST00000220764	ENST00000361488		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DECR1	chr8	91033284	+	FAM110B	chr8	59058466	+
5CDS-intron	ENST00000220764	ENST00000520369		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DECR1	chr8	91033284	+	FAM110B	chr8	59058466	+
3UTR-5UTR	ENST00000519007	ENST00000361488		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DECR1	chr8	91033284	+	FAM110B	chr8	59058466	+
3UTR-intron	ENST00000519007	ENST00000520369		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DECR1	chr8	91033284	+	FAM110B	chr8	59058466	+
5CDS-5UTR	ENST00000522161	ENST00000361488		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DECR1	chr8	91033284	+	FAM110B	chr8	59058466	+
5CDS-intron	ENST00000522161	ENST00000520369		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DECR1	chr8	91033284	+	FAM110B	chr8	59058466	+
5UTR-3CDS	ENST00000394389	ENST00000300408		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
5UTR-3CDS	ENST00000394389	ENST00000511832		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
5UTR-5UTR	ENST00000394389	ENST00000508009		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
intron-3CDS	ENST00000394386	ENST00000300408		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
intron-3CDS	ENST00000394386	ENST00000511832		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
intron-5UTR	ENST00000394386	ENST00000508009		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
intron-3CDS	ENST00000487847	ENST00000300408		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
intron-3CDS	ENST00000487847	ENST00000511832		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
intron-5UTR	ENST00000487847	ENST00000508009		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	DUSP14	chr17	35850064	+	PHB	chr17	47486835	-
5CDS-5UTR	ENST00000425967	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000425967	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000425967	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000425967	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000425967	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000425967	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000425967	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397091	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397091	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397091	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397091	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397091	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397091	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397091	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000447712	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000447712	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000447712	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000447712	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000447712	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000447712	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000447712	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000341462	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000341462	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000341462	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000341462	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000341462	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000341462	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000341462	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000532791	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000532791	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000532791	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000532791	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000532791	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000532791	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000532791	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397113	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397113	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397113	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397113	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397113	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397113	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397113	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000356207	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000356207	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000356207	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000356207	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000356207	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000356207	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000356207	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000335922	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000335922	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000335922	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000335922	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000335922	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000335922	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000335922	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000326324	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000326324	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000326324	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000326324	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000326324	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000326324	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000326324	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397103	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397103	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397103	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397103	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397103	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397103	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397103	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397108	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397108	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397108	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397108	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397108	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-5UTR	ENST00000397108	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000397108	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-5UTR	ENST00000496629	ENST00000519416		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-5UTR	ENST00000496629	ENST00000520615		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-5UTR	ENST00000496629	ENST00000443286		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-5UTR	ENST00000496629	ENST00000520340		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-5UTR	ENST00000496629	ENST00000518415		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000522752		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000348567		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000330691		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000317827		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000379931		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000276520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-5UTR	ENST00000496629	ENST00000520973		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
intron-intron	ENST00000496629	ENST00000520611		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	FGFR1	chr8	38275746	-	TACC1	chr8	38646222	+
5CDS-intron	ENST00000299314	ENST00000542802		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
5CDS-intron	ENST00000299314	ENST00000312010		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
5CDS-intron	ENST00000299314	ENST00000449938		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
5CDS-intron	ENST00000299314	ENST00000588467		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
5CDS-intron	ENST00000299314	ENST00000589424		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
5CDS-intron	ENST00000299314	ENST00000590546		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549940	ENST00000542802		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549940	ENST00000312010		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549940	ENST00000449938		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549940	ENST00000588467		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549940	ENST00000589424		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549940	ENST00000590546		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000392919	ENST00000542802		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000392919	ENST00000312010		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000392919	ENST00000449938		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000392919	ENST00000588467		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000392919	ENST00000589424		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000392919	ENST00000590546		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549165	ENST00000542802		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549165	ENST00000312010		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549165	ENST00000449938		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549165	ENST00000588467		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549165	ENST00000589424		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-intron	ENST00000549165	ENST00000590546		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GNPTAB	chr12	102157980	-	USP36	chr17	76783740	-
intron-3CDS	ENST00000392562	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392562	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392562	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-intron	ENST00000392562	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-3CDS	ENST00000316804	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-3CDS	ENST00000316804	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-3CDS	ENST00000316804	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-intron	ENST00000316804	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-3CDS	ENST00000316615	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-3CDS	ENST00000316615	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-3CDS	ENST00000316615	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
5UTR-intron	ENST00000316615	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392563	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392563	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392563	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-intron	ENST00000392563	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392564	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392564	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000392564	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-intron	ENST00000392564	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000578961	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000578961	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000578961	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-intron	ENST00000578961	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000462266	ENST00000389934		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000462266	ENST00000349033		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-3CDS	ENST00000462266	ENST00000240361		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
intron-intron	ENST00000462266	ENST00000584699		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	GRB2	chr17	73401570	-	TEX14	chr17	56707915	-
Frame-shit	ENST00000258991	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
Frame-shit	ENST00000258991	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
Frame-shit	ENST00000583097	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
Frame-shit	ENST00000583097	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
Frame-shit	ENST00000584379	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
Frame-shit	ENST00000584379	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
intron-3CDS	ENST00000581812	ENST00000424789		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
intron-3CDS	ENST00000581812	ENST00000389520		TCGA	LD	BRCA	TCGA-C8-A1HO-01A	TEX2	chr17	62289934	-	TANC2	chr17	61315175	+
In-frame	ENST00000588072	ENST00000302079		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000588072	ENST00000580640		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000588072	ENST00000503781		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000588072	ENST00000383408		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000588072	ENST00000538948		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000588072	ENST00000285141		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000588072	ENST00000581680		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000317235	ENST00000302079		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000317235	ENST00000580640		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000317235	ENST00000503781		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000317235	ENST00000383408		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000317235	ENST00000538948		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000317235	ENST00000285141		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000317235	ENST00000581680		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
Frame-shit	ENST00000309976	ENST00000302079		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
Frame-shit	ENST00000309976	ENST00000580640		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
Frame-shit	ENST00000309976	ENST00000503781		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000309976	ENST00000383408		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000309976	ENST00000538948		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000309976	ENST00000285141		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000309976	ENST00000581680		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000344987	ENST00000302079		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000344987	ENST00000580640		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000344987	ENST00000503781		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000344987	ENST00000383408		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000344987	ENST00000538948		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000344987	ENST00000285141		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000344987	ENST00000581680		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-3CDS	ENST00000592755	ENST00000302079		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-3CDS	ENST00000592755	ENST00000580640		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-3CDS	ENST00000592755	ENST00000503781		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-intron	ENST00000592755	ENST00000383408		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-intron	ENST00000592755	ENST00000538948		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-intron	ENST00000592755	ENST00000285141		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
intron-intron	ENST00000592755	ENST00000581680		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000399978	ENST00000302079		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000399978	ENST00000580640		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
In-frame	ENST00000399978	ENST00000503781		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000399978	ENST00000383408		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000399978	ENST00000538948		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000399978	ENST00000285141		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-intron	ENST00000399978	ENST00000581680		TCGA	LD	BRCA	TCGA-C8-A26V-01A	MPPE1	chr18	11889386	-	PIEZO2	chr18	10871413	-
5CDS-5UTR	ENST00000283249	ENST00000355831		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000283249	ENST00000343439		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000283249	ENST00000392782		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000283249	ENST00000392783		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000283249	ENST00000483316		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
intron-5UTR	ENST00000485635	ENST00000355831		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
intron-5UTR	ENST00000485635	ENST00000343439		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
intron-5UTR	ENST00000485635	ENST00000392782		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
intron-5UTR	ENST00000485635	ENST00000392783		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
intron-5UTR	ENST00000485635	ENST00000483316		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000428609	ENST00000355831		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000428609	ENST00000343439		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000428609	ENST00000392782		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000428609	ENST00000392783		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000428609	ENST00000483316		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409967	ENST00000355831		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409967	ENST00000343439		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409967	ENST00000392782		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409967	ENST00000392783		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409967	ENST00000483316		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409872	ENST00000355831		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409872	ENST00000343439		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409872	ENST00000392782		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409872	ENST00000392783		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5CDS-5UTR	ENST00000409872	ENST00000483316		TCGA	LD	BRCA	TCGA-C8-A26W-01A	ITGB6	chr2	160964190	-	BAZ2B	chr2	160335232	-
5UTR-5UTR	ENST00000327134	ENST00000314118		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-5UTR	ENST00000327134	ENST00000421265		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-5UTR	ENST00000327134	ENST00000541663		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-3UTR	ENST00000327134	ENST00000495440		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
In-frame	ENST00000242783	ENST00000558518		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000242783	ENST00000557933		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000242783	ENST00000455727		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000242783	ENST00000535915		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000242783	ENST00000545707		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000242783	ENST00000558013		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
5CDS-intron	ENST00000242783	ENST00000560628		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000587429	ENST00000558518		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000587429	ENST00000557933		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000587429	ENST00000455727		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000587429	ENST00000535915		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000587429	ENST00000545707		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000587429	ENST00000558013		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-intron	ENST00000587429	ENST00000560628		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000342216	ENST00000558518		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000342216	ENST00000557933		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000342216	ENST00000455727		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000342216	ENST00000535915		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000342216	ENST00000545707		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
In-frame	ENST00000342216	ENST00000558013		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
5CDS-intron	ENST00000342216	ENST00000560628		TCGA	LD	BRCA	TCGA-C8-A26W-01A	PKN1	chr19	14557373	+	LDLR	chr19	11227535	+
intron-3CDS	ENST00000511725	ENST00000306846		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-3CDS	ENST00000511725	ENST00000436644		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-5UTR	ENST00000511725	ENST00000338972		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-5UTR	ENST00000511725	ENST00000514514		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5UTR-3CDS	ENST00000253815	ENST00000306846		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5UTR-3CDS	ENST00000253815	ENST00000436644		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5UTR-5UTR	ENST00000253815	ENST00000338972		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5UTR-5UTR	ENST00000253815	ENST00000514514		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
Frame-shit	ENST00000398733	ENST00000306846		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
Frame-shit	ENST00000398733	ENST00000436644		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5CDS-5UTR	ENST00000398733	ENST00000338972		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5CDS-5UTR	ENST00000398733	ENST00000514514		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-3CDS	ENST00000505548	ENST00000306846		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-3CDS	ENST00000505548	ENST00000436644		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-5UTR	ENST00000505548	ENST00000338972		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
intron-5UTR	ENST00000505548	ENST00000514514		TCGA	LD	BRCA	TCGA-C8-A26W-01A	UBE2D2	chr5	138941400	+	PAIP1	chr5	43556101	-
5CDS-3UTR	ENST00000265523	ENST00000462448		TCGA	LD	BRCA	TCGA-C8-A26X-01A	BLVRA	chr7	43843446	+	STK17A	chr7	43635500	+
5CDS-3UTR	ENST00000265523	ENST00000319357		TCGA	LD	BRCA	TCGA-C8-A26X-01A	BLVRA	chr7	43843446	+	STK17A	chr7	43635500	+
5CDS-3UTR	ENST00000402924	ENST00000462448		TCGA	LD	BRCA	TCGA-C8-A26X-01A	BLVRA	chr7	43843446	+	STK17A	chr7	43635500	+
5CDS-3UTR	ENST00000402924	ENST00000319357		TCGA	LD	BRCA	TCGA-C8-A26X-01A	BLVRA	chr7	43843446	+	STK17A	chr7	43635500	+
5CDS-5UTR	ENST00000393043	ENST00000262293		TCGA	LD	BRCA	TCGA-C8-A26X-01A	CLTC	chr17	57697534	+	PRR11	chr17	57247109	+
5CDS-5UTR	ENST00000269122	ENST00000262293		TCGA	LD	BRCA	TCGA-C8-A26X-01A	CLTC	chr17	57697534	+	PRR11	chr17	57247109	+
5CDS-5UTR	ENST00000579456	ENST00000262293		TCGA	LD	BRCA	TCGA-C8-A26X-01A	CLTC	chr17	57697534	+	PRR11	chr17	57247109	+
intron-5UTR	ENST00000579815	ENST00000262293		TCGA	LD	BRCA	TCGA-C8-A26X-01A	CLTC	chr17	57697534	+	PRR11	chr17	57247109	+
Frame-shit	ENST00000373023	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
Frame-shit	ENST00000373023	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
5CDS-intron	ENST00000373023	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
In-frame	ENST00000373026	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
In-frame	ENST00000373026	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
5CDS-intron	ENST00000373026	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000373024	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000373024	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-intron	ENST00000373024	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000373021	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000373021	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-intron	ENST00000373021	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
Frame-shit	ENST00000373027	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
Frame-shit	ENST00000373027	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
5CDS-intron	ENST00000373027	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000458109	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000458109	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-intron	ENST00000458109	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000467066	ENST00000373019		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-3CDS	ENST00000467066	ENST00000448721		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
intron-intron	ENST00000467066	ENST00000489537		TCGA	LD	BRCA	TCGA-C8-A26X-01A	INPP5B	chr1	38397345	-	SF3A3	chr1	38425847	-
5CDS-5UTR	ENST00000419727	ENST00000256362		TCGA	LD	BRCA	TCGA-C8-A26X-01A	JDP2	chr14	75928233	+	VRTN	chr14	74823486	+
intron-5UTR	ENST00000559773	ENST00000256362		TCGA	LD	BRCA	TCGA-C8-A26X-01A	JDP2	chr14	75928233	+	VRTN	chr14	74823486	+
5CDS-5UTR	ENST00000437176	ENST00000256362		TCGA	LD	BRCA	TCGA-C8-A26X-01A	JDP2	chr14	75928233	+	VRTN	chr14	74823486	+
5CDS-5UTR	ENST00000435893	ENST00000256362		TCGA	LD	BRCA	TCGA-C8-A26X-01A	JDP2	chr14	75928233	+	VRTN	chr14	74823486	+
5CDS-5UTR	ENST00000267569	ENST00000256362		TCGA	LD	BRCA	TCGA-C8-A26X-01A	JDP2	chr14	75928233	+	VRTN	chr14	74823486	+
5CDS-intron	ENST00000378137	ENST00000538928		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000584529		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000290866		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000428043		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000490216		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000577647		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000290863		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000421982		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000378137	ENST00000413513		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000538928		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000584529		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000290866		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000428043		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000490216		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000577647		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000290863		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000421982		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
5CDS-intron	ENST00000325718	ENST00000413513		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000538928		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000584529		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000290866		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000428043		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000490216		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000577647		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000290863		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000421982		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
intron-intron	ENST00000579179	ENST00000413513		TCGA	LD	BRCA	TCGA-C8-A26X-01A	MLLT6	chr17	36868267	+	ACE	chr17	61573755	+
3UTR-3UTR	ENST00000397661	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000397661	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592199	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592199	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587760	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587760	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585575	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585575	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000360105	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000360105	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000588228	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000588228	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587260	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587260	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000358552	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000358552	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000588680	ENST00000585548		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000588680	ENST00000317060		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
In-frame	ENST00000407008	ENST00000589222		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
In-frame	ENST00000407008	ENST00000407086		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
In-frame	ENST00000407008	ENST00000390652		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
In-frame	ENST00000407008	ENST00000408905		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
In-frame	ENST00000407008	ENST00000588462		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
In-frame	ENST00000407008	ENST00000585744		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
In-frame	ENST00000407008	ENST00000588874		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
5CDS-intron	ENST00000407008	ENST00000585812		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000589222		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000407086		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000390652		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000408905		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000588462		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000585744		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000583517	ENST00000588874		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-intron	ENST00000583517	ENST00000585812		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000589222		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000407086		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000390652		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000408905		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000588462		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000585744		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-3CDS	ENST00000582037	ENST00000588874		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
intron-intron	ENST00000582037	ENST00000585812		TCGA	LD	BRCA	TCGA-C8-A26X-01A	NLK	chr17	26495683	+	BCAS3	chr17	59067332	+
Frame-shit	ENST00000393533	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000393533	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000372814	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000372814	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000351030	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000351030	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000604420	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000604420	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
intron-3CDS	ENST00000535026	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
intron-5UTR	ENST00000535026	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
intron-3CDS	ENST00000448249	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
intron-5UTR	ENST00000448249	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000393527	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000393527	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000434106	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000434106	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000546203	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000546203	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000372791	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000372791	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000372807	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000372807	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000444119	ENST00000372870		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
5CDS-5UTR	ENST00000444119	ENST00000300456		TCGA	LD	BRCA	TCGA-C8-A26X-01A	ODF2	chr9	131231632	+	SLC27A4	chr9	131105406	+
Frame-shit	ENST00000223073	ENST00000262189		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
Frame-shit	ENST00000223073	ENST00000355193		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000223073	ENST00000485655		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000223073	ENST00000485241		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5UTR-3CDS	ENST00000481788	ENST00000262189		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5UTR-3CDS	ENST00000481788	ENST00000355193		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5UTR-intron	ENST00000481788	ENST00000485655		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5UTR-intron	ENST00000481788	ENST00000485241		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
Frame-shit	ENST00000415472	ENST00000262189		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
Frame-shit	ENST00000415472	ENST00000355193		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000415472	ENST00000485655		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000415472	ENST00000485241		TCGA	LD	BRCA	TCGA-C8-A26X-01A	RBM28	chr7	127961319	-	KMT2C	chr7	151882716	-
intron-3CDS	ENST00000585748	ENST00000354171		TCGA	LD	BRCA	TCGA-C8-A26X-01A	STK11	chr19	1222005	+	GPX4	chr19	1105185	+
intron-3CDS	ENST00000585748	ENST00000589115		TCGA	LD	BRCA	TCGA-C8-A26X-01A	STK11	chr19	1222005	+	GPX4	chr19	1105185	+
Frame-shit	ENST00000326873	ENST00000354171		TCGA	LD	BRCA	TCGA-C8-A26X-01A	STK11	chr19	1222005	+	GPX4	chr19	1105185	+
Frame-shit	ENST00000326873	ENST00000589115		TCGA	LD	BRCA	TCGA-C8-A26X-01A	STK11	chr19	1222005	+	GPX4	chr19	1105185	+
intron-5UTR	ENST00000430069	ENST00000263967		TCGA	LD	BRCA	TCGA-C8-A26X-01A	TBL1XR1	chr3	176914909	-	PIK3CA	chr3	178916538	+
5UTR-5UTR	ENST00000457928	ENST00000263967		TCGA	LD	BRCA	TCGA-C8-A26X-01A	TBL1XR1	chr3	176914909	-	PIK3CA	chr3	178916538	+
Frame-shit	ENST00000259371	ENST00000373574		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	DAB2IP	chr9	124526158	+	WDR38	chr9	127616484	+
Frame-shit	ENST00000408936	ENST00000373574		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	DAB2IP	chr9	124526158	+	WDR38	chr9	127616484	+
Frame-shit	ENST00000309989	ENST00000373574		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	DAB2IP	chr9	124526158	+	WDR38	chr9	127616484	+
intron-3CDS	ENST00000487716	ENST00000373574		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	DAB2IP	chr9	124526158	+	WDR38	chr9	127616484	+
In-frame	ENST00000332142	ENST00000303735		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000332142	ENST00000409149		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000332142	ENST00000409058		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000332142	ENST00000409662		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000332142	ENST00000493887		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000328032	ENST00000303735		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000328032	ENST00000409149		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000328032	ENST00000409058		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000328032	ENST00000409662		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000328032	ENST00000493887		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
intron-3CDS	ENST00000477019	ENST00000303735		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
intron-3CDS	ENST00000477019	ENST00000409149		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
intron-3CDS	ENST00000477019	ENST00000409058		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
intron-3CDS	ENST00000477019	ENST00000409662		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
intron-intron	ENST00000477019	ENST00000493887		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	KCNH7	chr2	163693047	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000397661	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000397661	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000397661	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000397661	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000397661	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000592199	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000592199	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000592199	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000592199	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000592199	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587760	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587760	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587760	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587760	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000587760	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000585575	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000585575	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000585575	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000585575	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000585575	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000360105	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000360105	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000360105	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000360105	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000360105	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000588228	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000588228	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000588228	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000588228	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000588228	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587260	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587260	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587260	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000587260	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000587260	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000358552	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000358552	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000358552	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
In-frame	ENST00000358552	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000358552	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
intron-3CDS	ENST00000588680	ENST00000541222		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
intron-3CDS	ENST00000588680	ENST00000316856		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
intron-3CDS	ENST00000588680	ENST00000586534		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
intron-3CDS	ENST00000588680	ENST00000592268		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
intron-3UTR	ENST00000588680	ENST00000588826		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	NFIX	chr19	13136366	+	RAD23A	chr19	13060089	+
5CDS-3UTR	ENST00000219689	ENST00000415654		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP31	chr16	23159959	-	NPIPB5	chr16	22535141	+
5CDS-3UTR	ENST00000219689	ENST00000424340		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP31	chr16	23159959	-	NPIPB5	chr16	22535141	+
5CDS-3UTR	ENST00000219689	ENST00000517539		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP31	chr16	23159959	-	NPIPB5	chr16	22535141	+
intron-3UTR	ENST00000567975	ENST00000415654		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP31	chr16	23159959	-	NPIPB5	chr16	22535141	+
intron-3UTR	ENST00000567975	ENST00000424340		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP31	chr16	23159959	-	NPIPB5	chr16	22535141	+
intron-3UTR	ENST00000567975	ENST00000517539		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP31	chr16	23159959	-	NPIPB5	chr16	22535141	+
intron-intron	ENST00000400301	ENST00000542817		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000400301	ENST00000458643		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000400301	ENST00000448012		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000400301	ENST00000519305		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-intron	ENST00000308271	ENST00000542817		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000308271	ENST00000458643		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000308271	ENST00000448012		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000308271	ENST00000519305		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-intron	ENST00000374732	ENST00000542817		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000374732	ENST00000458643		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000374732	ENST00000448012		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000374732	ENST00000519305		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-intron	ENST00000529637	ENST00000542817		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000529637	ENST00000458643		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000529637	ENST00000448012		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000529637	ENST00000519305		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-intron	ENST00000479177	ENST00000542817		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000479177	ENST00000458643		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000479177	ENST00000448012		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000479177	ENST00000519305		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-intron	ENST00000421625	ENST00000542817		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000421625	ENST00000458643		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000421625	ENST00000448012		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
intron-5UTR	ENST00000421625	ENST00000519305		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	USP48	chr16	23159959	-	NPIPB3	chr16	21426406	-
5CDS-intron	ENST00000322366	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000322366	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000322366	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000322366	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000322366	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000322366	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000322366	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000295888	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000382148		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000447367		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000382150		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000382152		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000509207		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000382149		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
intron-intron	ENST00000512267	ENST00000359001		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	WDFY3	chr4	85634312	-	KCNIP4	chr4	21764655	-
5UTR-3UTR	ENST00000536254	ENST00000424846		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	TPM3P9	chr19	53945049	+
5UTR-3UTR	ENST00000360729	ENST00000424846		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	TPM3P9	chr19	53945049	+
intron-3UTR	ENST00000588311	ENST00000424846		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	TPM3P9	chr19	53945049	+
intron-3UTR	ENST00000585696	ENST00000424846		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	TPM3P9	chr19	53945049	+
intron-3UTR	ENST00000392163	ENST00000424846		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	TPM3P9	chr19	53945049	+
5UTR-3UTR	ENST00000536254	ENST00000454407		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	ZNF761	chr19	53948254	+
5UTR-3UTR	ENST00000360729	ENST00000454407		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000588311	ENST00000454407		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000585696	ENST00000454407		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000392163	ENST00000454407		TCGA	LD	BRCA	TCGA-C8-A26Y-01A	ZNF567	chr19	37180399	+	ZNF761	chr19	53948254	+
In-frame	ENST00000357103	ENST00000382722		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
In-frame	ENST00000357103	ENST00000587995		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
In-frame	ENST00000357103	ENST00000588077		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
In-frame	ENST00000357103	ENST00000586184		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
In-frame	ENST00000357103	ENST00000585708		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
In-frame	ENST00000357103	ENST00000585732		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
5CDS-intron	ENST00000357103	ENST00000539048		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
5CDS-intron	ENST00000357103	ENST00000538450		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
5CDS-intron	ENST00000357103	ENST00000538027		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-3CDS	ENST00000544470	ENST00000382722		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-3CDS	ENST00000544470	ENST00000587995		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-3CDS	ENST00000544470	ENST00000588077		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-3CDS	ENST00000544470	ENST00000586184		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-3CDS	ENST00000544470	ENST00000585708		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-3CDS	ENST00000544470	ENST00000585732		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-intron	ENST00000544470	ENST00000539048		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-intron	ENST00000544470	ENST00000538450		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
intron-intron	ENST00000544470	ENST00000538027		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	ADIPOR2	chr12	1863680	+	CACNA2D4	chr12	1919506	-
Frame-shit	ENST00000369799	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
5CDS-intron	ENST00000369799	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
3UTR-3CDS	ENST00000475081	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
3UTR-intron	ENST00000475081	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
intron-3CDS	ENST00000359172	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
intron-intron	ENST00000359172	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
intron-3CDS	ENST00000393614	ENST00000356554		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
intron-intron	ENST00000393614	ENST00000482811		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	AHCYL1	chr1	110527794	+	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000398073	ENST00000324871		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
In-frame	ENST00000398073	ENST00000257848		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
5CDS-5UTR	ENST00000398073	ENST00000548681		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
Frame-shit	ENST00000548823	ENST00000324871		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
In-frame	ENST00000548823	ENST00000257848		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
5CDS-5UTR	ENST00000548823	ENST00000548681		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
intron-3CDS	ENST00000547701	ENST00000324871		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
intron-3CDS	ENST00000547701	ENST00000257848		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
intron-5UTR	ENST00000547701	ENST00000548681		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	CTDSP2	chr12	58240155	-	METTL1	chr12	58165040	-
5CDS-3UTR	ENST00000453981	ENST00000396613		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000453981	ENST00000377959		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000453981	ENST00000377960		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000453981	ENST00000474050		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000432829	ENST00000396613		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000432829	ENST00000377959		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000432829	ENST00000377960		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000432829	ENST00000474050		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000469391	ENST00000396613		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000469391	ENST00000377959		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000469391	ENST00000377960		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000469391	ENST00000474050		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000382331	ENST00000396613		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000382331	ENST00000377959		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000382331	ENST00000377960		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000382331	ENST00000474050		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000382329	ENST00000396613		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000382329	ENST00000377959		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000382329	ENST00000377960		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000382329	ENST00000474050		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000493666	ENST00000396613		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000493666	ENST00000377959		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000493666	ENST00000377960		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000493666	ENST00000474050		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	DOCK8	chr9	449927	+	GLIPR2	chr9	36162359	+
5UTR-3CDS	ENST00000360689	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000360689	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000360689	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000360689	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000360689	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000394586	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000394586	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000394586	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000394586	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000394586	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000557164	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000557164	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-3CDS	ENST00000557164	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000557164	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
5UTR-intron	ENST00000557164	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000394585	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000394585	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000394585	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000394585	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000394585	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000358307	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000358307	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000358307	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000358307	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000358307	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000417683	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000417683	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000417683	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000417683	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000417683	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000554765	ENST00000371839		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000554765	ENST00000371838		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-3CDS	ENST00000554765	ENST00000371836		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000554765	ENST00000334103		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
intron-intron	ENST00000554765	ENST00000497451		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	FUT8	chr14	65878711	+	AGBL4	chr1	49711536	-
In-frame	ENST00000360943	ENST00000539068		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	UBE2Z	chr17	47000299	+	FKBP5	chr6	35604935	-
In-frame	ENST00000360943	ENST00000536438		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	UBE2Z	chr17	47000299	+	FKBP5	chr6	35604935	-
In-frame	ENST00000360943	ENST00000357266		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	UBE2Z	chr17	47000299	+	FKBP5	chr6	35604935	-
5CDS-intron	ENST00000360943	ENST00000540787		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	UBE2Z	chr17	47000299	+	FKBP5	chr6	35604935	-
5CDS-intron	ENST00000360943	ENST00000542713		TCGA	LD	BRCA	TCGA-C8-A26Z-01A	UBE2Z	chr17	47000299	+	FKBP5	chr6	35604935	-
intron-3CDS	ENST00000202028	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000202028	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000202028	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000202028	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000202028	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000202028	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000202028	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000202028	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373950	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373950	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373950	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373950	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373950	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373950	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373950	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373950	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000441639	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000441639	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000441639	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000441639	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000441639	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000441639	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000441639	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000441639	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373946	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373946	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373946	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373946	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373946	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373946	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373946	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373946	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000338074	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000338074	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000338074	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000338074	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000338074	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000338074	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000338074	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000338074	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373941	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373941	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000373941	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373941	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373941	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373941	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373941	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000373941	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000479336	ENST00000346141		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000479336	ENST00000325752		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-3CDS	ENST00000479336	ENST00000340993		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000479336	ENST00000394239		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000479336	ENST00000592426		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000479336	ENST00000376094		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000479336	ENST00000539018		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
intron-intron	ENST00000479336	ENST00000591611		TCGA	LD	BRCA	TCGA-C8-A273-01A	EPB41L1	chr20	34710669	+	TUBD1	chr17	57941208	-
Frame-shit	ENST00000262189	ENST00000361727		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
5CDS-intron	ENST00000262189	ENST00000538075		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
5CDS-intron	ENST00000262189	ENST00000463592		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
Frame-shit	ENST00000355193	ENST00000361727		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
5CDS-intron	ENST00000355193	ENST00000538075		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
5CDS-intron	ENST00000355193	ENST00000463592		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
intron-3CDS	ENST00000485655	ENST00000361727		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
intron-intron	ENST00000485655	ENST00000538075		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
intron-intron	ENST00000485655	ENST00000463592		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
intron-3CDS	ENST00000485241	ENST00000361727		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
intron-intron	ENST00000485241	ENST00000538075		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
intron-intron	ENST00000485241	ENST00000463592		TCGA	LD	BRCA	TCGA-C8-A273-01A	KMT2C	chr7	152132711	-	CNTNAP2	chr7	146471363	+
Frame-shit	ENST00000371610	ENST00000360314		TCGA	LD	BRCA	TCGA-C8-A273-01A	PARD6B	chr20	49354616	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000371610	ENST00000371336		TCGA	LD	BRCA	TCGA-C8-A273-01A	PARD6B	chr20	49354616	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000371610	ENST00000434344		TCGA	LD	BRCA	TCGA-C8-A273-01A	PARD6B	chr20	49354616	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000396039	ENST00000360314		TCGA	LD	BRCA	TCGA-C8-A273-01A	PARD6B	chr20	49354616	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000396039	ENST00000371336		TCGA	LD	BRCA	TCGA-C8-A273-01A	PARD6B	chr20	49354616	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000396039	ENST00000434344		TCGA	LD	BRCA	TCGA-C8-A273-01A	PARD6B	chr20	49354616	+	CASS4	chr20	55020956	+
5CDS-5UTR	ENST00000373433	ENST00000375114		TCGA	LD	BRCA	TCGA-C8-A273-01A	RPRD1B	chr20	36694658	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000373433	ENST00000246194		TCGA	LD	BRCA	TCGA-C8-A273-01A	RPRD1B	chr20	36694658	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000373433	ENST00000493399		TCGA	LD	BRCA	TCGA-C8-A273-01A	RPRD1B	chr20	36694658	+	RALY	chr20	32659872	+
intron-5UTR	ENST00000471511	ENST00000375114		TCGA	LD	BRCA	TCGA-C8-A273-01A	RPRD1B	chr20	36694658	+	RALY	chr20	32659872	+
intron-5UTR	ENST00000471511	ENST00000246194		TCGA	LD	BRCA	TCGA-C8-A273-01A	RPRD1B	chr20	36694658	+	RALY	chr20	32659872	+
intron-5UTR	ENST00000471511	ENST00000493399		TCGA	LD	BRCA	TCGA-C8-A273-01A	RPRD1B	chr20	36694658	+	RALY	chr20	32659872	+
Frame-shit	ENST00000023939	ENST00000371610		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
5CDS-intron	ENST00000023939	ENST00000396039		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
Frame-shit	ENST00000395881	ENST00000371610		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
5CDS-intron	ENST00000395881	ENST00000396039		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
Frame-shit	ENST00000357348	ENST00000371610		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
5CDS-intron	ENST00000357348	ENST00000396039		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
3UTR-3CDS	ENST00000484084	ENST00000371610		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
3UTR-intron	ENST00000484084	ENST00000396039		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
Frame-shit	ENST00000435342	ENST00000371610		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
5CDS-intron	ENST00000435342	ENST00000396039		TCGA	LD	BRCA	TCGA-C8-A273-01A	RTFDC1	chr20	55043822	+	PARD6B	chr20	49366196	+
5UTR-3CDS	ENST00000580123	ENST00000293218		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
5UTR-3CDS	ENST00000580123	ENST00000589666		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
3UTR-3CDS	ENST00000585293	ENST00000293218		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
3UTR-3CDS	ENST00000585293	ENST00000589666		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
5UTR-3CDS	ENST00000329783	ENST00000293218		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
5UTR-3CDS	ENST00000329783	ENST00000589666		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
5UTR-3CDS	ENST00000450736	ENST00000293218		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
5UTR-3CDS	ENST00000450736	ENST00000589666		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
intron-3CDS	ENST00000538213	ENST00000293218		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
intron-3CDS	ENST00000538213	ENST00000589666		TCGA	LD	BRCA	TCGA-C8-A273-01A	SLC16A5	chr17	73085399	+	UNK	chr17	73812851	+
intron-3CDS	ENST00000448276	ENST00000534862		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000448276	ENST00000538448		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000448276	ENST00000375862		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000448276	ENST00000520553		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000448276	ENST00000518730		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000448276	ENST00000375852		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-3CDS	ENST00000323347	ENST00000534862		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000323347	ENST00000538448		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000323347	ENST00000375862		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000323347	ENST00000520553		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000323347	ENST00000518730		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
intron-5UTR	ENST00000323347	ENST00000375852		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
5UTR-3CDS	ENST00000225742	ENST00000534862		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000225742	ENST00000538448		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000225742	ENST00000375862		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000225742	ENST00000520553		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000225742	ENST00000518730		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000225742	ENST00000375852		TCGA	LD	BRCA	TCGA-C8-A273-01A	SMARCD2	chr17	61919741	-	HCK	chr20	30659465	+
In-frame	ENST00000300896	ENST00000319380		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
5CDS-intron	ENST00000300896	ENST00000587581		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
Frame-shit	ENST00000592339	ENST00000319380		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
5CDS-intron	ENST00000592339	ENST00000587581		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
intron-3CDS	ENST00000393003	ENST00000319380		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
intron-intron	ENST00000393003	ENST00000587581		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
intron-3CDS	ENST00000586881	ENST00000319380		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
intron-intron	ENST00000586881	ENST00000587581		TCGA	LD	BRCA	TCGA-C8-A273-01A	USP32	chr17	58300772	-	UBE2O	chr17	74401654	-
5CDS-5UTR	ENST00000341217	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000581407	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000582266	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000452648	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000582059	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000583953	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000577682	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000583522	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5CDS-5UTR	ENST00000581381	ENST00000357424		TCGA	LD	BRCA	TCGA-C8-A275-01A	FAM222B	chr17	27093604	-	GIP	chr17	47044615	-
5UTR-3CDS	ENST00000467026	ENST00000346798		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000354192		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000348990		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000357903		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000358918		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000359726		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000448388		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000440126		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-3CDS	ENST00000467026	ENST00000439274		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5UTR-intron	ENST00000467026	ENST00000474136		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000346798		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000354192		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000348990		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000357903		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000358918		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000359726		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000448388		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000440126		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000397708	ENST00000439274		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5CDS-intron	ENST00000397708	ENST00000474136		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000346798		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000354192		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000348990		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000357903		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000358918		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000359726		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000448388		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000440126		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000291688	ENST00000439274		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
5CDS-intron	ENST00000291688	ENST00000474136		TCGA	LD	BRCA	TCGA-C8-A275-01A	MCM3AP	chr21	47662716	-	APP	chr21	27269985	-
Frame-shit	ENST00000393119	ENST00000246657		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000393119	ENST00000579344		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
Frame-shit	ENST00000313863	ENST00000246657		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000313863	ENST00000579344		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
Frame-shit	ENST00000337050	ENST00000246657		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000337050	ENST00000579344		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
Frame-shit	ENST00000537529	ENST00000246657		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000537529	ENST00000579344		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
Frame-shit	ENST00000546108	ENST00000246657		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000546108	ENST00000579344		TCGA	LD	BRCA	TCGA-C8-A275-01A	MKS1	chr17	56289739	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000416426	ENST00000300557		TCGA	LD	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55704664	+	PRR15L	chr17	46030629	-
5CDS-5UTR	ENST00000284073	ENST00000300557		TCGA	LD	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55704664	+	PRR15L	chr17	46030629	-
5CDS-5UTR	ENST00000322684	ENST00000300557		TCGA	LD	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55704664	+	PRR15L	chr17	46030629	-
5CDS-5UTR	ENST00000442934	ENST00000300557		TCGA	LD	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55704664	+	PRR15L	chr17	46030629	-
5CDS-5UTR	ENST00000579180	ENST00000300557		TCGA	LD	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55704664	+	PRR15L	chr17	46030629	-
3UTR-5UTR	ENST00000579505	ENST00000300557		TCGA	LD	BRCA	TCGA-C8-A275-01A	MSI2	chr17	55704664	+	PRR15L	chr17	46030629	-
intron-3CDS	ENST00000354329	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000354329	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000354329	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000354329	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000354329	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000354329	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000354329	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000354329	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000354329	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000354329	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000529578	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000529578	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000529578	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000529578	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000533112	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000533112	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000533112	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000533112	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000531253	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000531253	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000531253	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000531253	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000584601		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000406381		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000541774		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000445658		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000540147		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000584450		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-3CDS	ENST00000527372	ENST00000269571		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000527372	ENST00000578199		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000527372	ENST00000540042		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
intron-intron	ENST00000527372	ENST00000584888		TCGA	LD	BRCA	TCGA-C8-A275-01A	MYO18A	chr17	27464034	-	ERBB2	chr17	37879572	+
5UTR-5UTR	ENST00000336308	ENST00000245865		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000336308	ENST00000375840		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000336308	ENST00000392950		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000336308	ENST00000336174		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000336308	ENST00000447001		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000336308	ENST00000582137		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000336308	ENST00000580039		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000336308	ENST00000579340		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-5UTR	ENST00000578232	ENST00000245865		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-5UTR	ENST00000578232	ENST00000375840		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-5UTR	ENST00000578232	ENST00000392950		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-5UTR	ENST00000578232	ENST00000336174		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-intron	ENST00000578232	ENST00000447001		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-intron	ENST00000578232	ENST00000582137		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-intron	ENST00000578232	ENST00000580039		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
3UTR-5UTR	ENST00000578232	ENST00000579340		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000544210	ENST00000245865		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000544210	ENST00000375840		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000544210	ENST00000392950		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000544210	ENST00000336174		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000544210	ENST00000447001		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000544210	ENST00000582137		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000544210	ENST00000580039		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000544210	ENST00000579340		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000394250	ENST00000245865		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000394250	ENST00000375840		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000394250	ENST00000392950		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000394250	ENST00000336174		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000394250	ENST00000447001		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000394250	ENST00000582137		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000394250	ENST00000580039		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000394250	ENST00000579340		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000580611	ENST00000245865		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000580611	ENST00000375840		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000580611	ENST00000392950		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000580611	ENST00000336174		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000580611	ENST00000447001		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000580611	ENST00000582137		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-intron	ENST00000580611	ENST00000580039		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
5UTR-5UTR	ENST00000580611	ENST00000579340		TCGA	LD	BRCA	TCGA-C8-A275-01A	STARD3	chr17	37793484	+	STRADA	chr17	61791468	-
Frame-shit	ENST00000424789	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
Frame-shit	ENST00000424789	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-5UTR	ENST00000424789	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-intron	ENST00000424789	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-intron	ENST00000424789	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-intron	ENST00000424789	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
Frame-shit	ENST00000389520	ENST00000269033		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
Frame-shit	ENST00000389520	ENST00000540801		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-5UTR	ENST00000389520	ENST00000324677		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-intron	ENST00000389520	ENST00000582084		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-intron	ENST00000389520	ENST00000590153		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
5CDS-intron	ENST00000389520	ENST00000579954		TCGA	LD	BRCA	TCGA-C8-A275-01A	TANC2	chr17	61086987	+	SSH2	chr17	28004759	-
In-frame	ENST00000226230	ENST00000336915		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000226230	ENST00000584924		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
5UTR-3CDS	ENST00000583381	ENST00000336915		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
5UTR-3CDS	ENST00000583381	ENST00000584924		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
In-frame	ENST00000582113	ENST00000336915		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000582113	ENST00000584924		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000336687	ENST00000336915		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000336687	ENST00000584924		TCGA	LD	BRCA	TCGA-C8-A275-01A	TMEM97	chr17	26646391	+	SKAP1	chr17	46474147	-
5CDS-5UTR	ENST00000316881	ENST00000434704		TCGA	LD	BRCA	TCGA-C8-A275-01A	TRIM25	chr17	54990753	-	DLX3	chr17	48072490	-
5CDS-intron	ENST00000316881	ENST00000512495		TCGA	LD	BRCA	TCGA-C8-A275-01A	TRIM25	chr17	54990753	-	DLX3	chr17	48072490	-
intron-5UTR	ENST00000573108	ENST00000434704		TCGA	LD	BRCA	TCGA-C8-A275-01A	TRIM25	chr17	54990753	-	DLX3	chr17	48072490	-
intron-intron	ENST00000573108	ENST00000512495		TCGA	LD	BRCA	TCGA-C8-A275-01A	TRIM25	chr17	54990753	-	DLX3	chr17	48072490	-
5CDS-5UTR	ENST00000537230	ENST00000434704		TCGA	LD	BRCA	TCGA-C8-A275-01A	TRIM25	chr17	54990753	-	DLX3	chr17	48072490	-
5CDS-intron	ENST00000537230	ENST00000512495		TCGA	LD	BRCA	TCGA-C8-A275-01A	TRIM25	chr17	54990753	-	DLX3	chr17	48072490	-
Frame-shit	ENST00000525566	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000525566	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000429002	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000429002	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000503506	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000503506	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000526691	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000526691	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000388854	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000388854	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000354940	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000354940	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000526390	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000526390	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000529546	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000529546	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000540716	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000540716	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000524698	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5UTR-3CDS	ENST00000524698	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000542918	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000542918	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000378070	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
Frame-shit	ENST00000378070	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000397736	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000397736	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000427956	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000427956	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000526950	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000526950	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000526006	ENST00000392784		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
intron-3CDS	ENST00000526006	ENST00000257548		TCGA	LD	BRCA	TCGA-C8-A275-01A	TXNRD1	chr12	104682818	+	USP30	chr12	109505329	+
5CDS-intron	ENST00000300896	ENST00000262288		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
5CDS-intron	ENST00000300896	ENST00000571898		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
5CDS-intron	ENST00000592339	ENST00000262288		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
5CDS-intron	ENST00000592339	ENST00000571898		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
5CDS-intron	ENST00000393003	ENST00000262288		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
5CDS-intron	ENST00000393003	ENST00000571898		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
intron-intron	ENST00000586881	ENST00000262288		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
intron-intron	ENST00000586881	ENST00000571898		TCGA	LD	BRCA	TCGA-C8-A275-01A	USP32	chr17	58329742	-	SCPEP1	chr17	55075735	+
5CDS-5UTR	ENST00000262291	ENST00000335793		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000262291	ENST00000439510		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000262291	ENST00000581014		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000262291	ENST00000582303		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000537567	ENST00000335793		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000537567	ENST00000439510		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000537567	ENST00000581014		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000537567	ENST00000582303		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000539763	ENST00000335793		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000539763	ENST00000439510		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000539763	ENST00000581014		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000539763	ENST00000582303		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000536180	ENST00000335793		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000536180	ENST00000439510		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000536180	ENST00000581014		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000536180	ENST00000582303		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000545362	ENST00000335793		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000545362	ENST00000439510		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000545362	ENST00000581014		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000545362	ENST00000582303		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000588617	ENST00000335793		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000588617	ENST00000439510		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000588617	ENST00000581014		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000588617	ENST00000582303		TCGA	LD	BRCA	TCGA-C8-A275-01A	VMP1	chr17	57889147	+	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000327827	ENST00000417235		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-5UTR	ENST00000327827	ENST00000424070		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-intron	ENST00000327827	ENST00000575558		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-5UTR	ENST00000327827	ENST00000536134		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-5UTR	ENST00000327827	ENST00000573854		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-5UTR	ENST00000327827	ENST00000219054		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-5UTR	ENST00000327827	ENST00000575690		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
5CDS-5UTR	ENST00000327827	ENST00000396104		TCGA	LD	BRCA	TCGA-C8-A278-01A	C16orf72	chr16	9186858	+	ACSM2A	chr16	20471429	+
Frame-shit	ENST00000251241	ENST00000329697		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000251241	ENST00000565322		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000251241	ENST00000565232		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000251241	ENST00000567001		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-intron	ENST00000251241	ENST00000414188		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-intron	ENST00000251241	ENST00000567288		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000451169	ENST00000329697		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000451169	ENST00000565322		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000451169	ENST00000565232		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000451169	ENST00000567001		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-intron	ENST00000451169	ENST00000414188		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-intron	ENST00000451169	ENST00000567288		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000425628	ENST00000329697		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000425628	ENST00000565322		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000425628	ENST00000565232		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
Frame-shit	ENST00000425628	ENST00000567001		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-intron	ENST00000425628	ENST00000414188		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-intron	ENST00000425628	ENST00000567288		TCGA	LD	BRCA	TCGA-C8-A278-01A	DHX40	chr17	57665414	+	ACSM2B	chr16	20552095	-
5CDS-5UTR	ENST00000583610	ENST00000209728		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000394294	ENST00000209728		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000264658	ENST00000209728		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	CDC6	chr17	38445660	+
intron-5UTR	ENST00000577399	ENST00000209728		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	CDC6	chr17	38445660	+
5CDS-3UTR	ENST00000583610	ENST00000494757		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000583610	ENST00000323571		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000583610	ENST00000585043		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000583610	ENST00000394103		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000583610	ENST00000536600		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000583610	ENST00000583130		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000394294	ENST00000494757		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000394294	ENST00000323571		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000394294	ENST00000585043		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000394294	ENST00000394103		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000394294	ENST00000536600		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000394294	ENST00000583130		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000264658	ENST00000494757		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000264658	ENST00000323571		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000264658	ENST00000585043		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000264658	ENST00000394103		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000264658	ENST00000536600		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-3UTR	ENST00000264658	ENST00000583130		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
intron-3UTR	ENST00000577399	ENST00000494757		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
intron-3UTR	ENST00000577399	ENST00000323571		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
intron-3UTR	ENST00000577399	ENST00000585043		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
intron-3UTR	ENST00000577399	ENST00000394103		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
intron-3UTR	ENST00000577399	ENST00000536600		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
intron-3UTR	ENST00000577399	ENST00000583130		TCGA	LD	BRCA	TCGA-C8-A278-01A	FBXL20	chr17	37557614	-	WIPF2	chr17	38434437	+
5CDS-intron	ENST00000566621	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000566621	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000566621	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000566621	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000566621	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-intron	ENST00000437989	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000437989	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000437989	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000437989	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000437989	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-intron	ENST00000569302	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000569302	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000569302	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000569302	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000569302	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-intron	ENST00000567389	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000567389	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000567389	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000567389	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000567389	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-intron	ENST00000562877	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562877	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562877	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562877	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562877	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-intron	ENST00000338183	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000338183	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000338183	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000338183	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000338183	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
3UTR-intron	ENST00000565792	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
3UTR-5UTR	ENST00000565792	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
3UTR-5UTR	ENST00000565792	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
3UTR-5UTR	ENST00000565792	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
3UTR-5UTR	ENST00000565792	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-intron	ENST00000562489	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562489	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562489	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562489	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
5CDS-5UTR	ENST00000562489	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
intron-intron	ENST00000563167	ENST00000604213		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
intron-5UTR	ENST00000563167	ENST00000409796		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
intron-5UTR	ENST00000563167	ENST00000344791		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
intron-5UTR	ENST00000563167	ENST00000545021		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
intron-5UTR	ENST00000563167	ENST00000332728		TCGA	LD	BRCA	TCGA-C8-A27A-01A	C15orf41	chr15	37002162	+	LYSMD4	chr15	100272212	-
intron-intron	ENST00000502463	ENST00000408388		TCGA	LD	BRCA	TCGA-C8-A27A-01A	CASC11	chr8	128715295	-	PVT1	chr8	128867401	+
5CDS-5UTR	ENST00000500597	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000500597	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000500597	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000500597	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000500597	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000500597	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000500597	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000500597	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000407977	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000407977	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000407977	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000407977	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000407977	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000407977	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000407977	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000407977	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000583753	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000583753	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000583753	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000583753	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000583753	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000583753	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000583753	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000583753	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000584437	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000584437	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000584437	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000584437	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000584437	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000584437	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000584437	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000584437	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577716	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577716	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577716	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577716	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577716	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577716	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577716	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577716	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000581868	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000581868	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000581868	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000581868	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000581868	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000581868	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000581868	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000581868	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577625	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577625	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577625	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-5UTR	ENST00000577625	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577625	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577625	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577625	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
5CDS-intron	ENST00000577625	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-5UTR	ENST00000580014	ENST00000362042		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-5UTR	ENST00000580014	ENST00000585291		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-5UTR	ENST00000580014	ENST00000357480		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-5UTR	ENST00000580014	ENST00000361665		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-intron	ENST00000580014	ENST00000579481		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-intron	ENST00000580014	ENST00000582155		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-intron	ENST00000580014	ENST00000583378		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
intron-intron	ENST00000580014	ENST00000536222		TCGA	LD	BRCA	TCGA-C8-A27A-01A	RNF43	chr17	56439905	-	NFE2L1	chr17	46128479	+
Frame-shit	ENST00000230640	ENST00000283122		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
Frame-shit	ENST00000230640	ENST00000522083		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
Frame-shit	ENST00000230640	ENST00000522864		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
5CDS-intron	ENST00000230640	ENST00000522565		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
5CDS-intron	ENST00000230640	ENST00000522842		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
Frame-shit	ENST00000545714	ENST00000283122		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
Frame-shit	ENST00000545714	ENST00000522083		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
Frame-shit	ENST00000545714	ENST00000522864		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
5CDS-intron	ENST00000545714	ENST00000522565		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
5CDS-intron	ENST00000545714	ENST00000522842		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
intron-3CDS	ENST00000504388	ENST00000283122		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
intron-3CDS	ENST00000504388	ENST00000522083		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
intron-3CDS	ENST00000504388	ENST00000522864		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
intron-intron	ENST00000504388	ENST00000522565		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
intron-intron	ENST00000504388	ENST00000522842		TCGA	LD	BRCA	TCGA-C8-A27A-01A	SKIV2L2	chr5	54662703	+	CETN3	chr5	89689924	-
Frame-shit	ENST00000395996	ENST00000417640		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000395996	ENST00000521954		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000395996	ENST00000522820		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000395996	ENST00000521366		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
Frame-shit	ENST00000358544	ENST00000417640		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000358544	ENST00000521954		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000358544	ENST00000522820		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000358544	ENST00000521366		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
Frame-shit	ENST00000357162	ENST00000417640		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000357162	ENST00000521954		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000357162	ENST00000522820		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
5CDS-intron	ENST00000357162	ENST00000521366		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-3CDS	ENST00000355155	ENST00000417640		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000355155	ENST00000521954		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000355155	ENST00000522820		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000355155	ENST00000521366		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-3CDS	ENST00000441350	ENST00000417640		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000441350	ENST00000521954		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000441350	ENST00000522820		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000441350	ENST00000521366		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-3CDS	ENST00000521932	ENST00000417640		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000521932	ENST00000521954		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000521932	ENST00000522820		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
intron-intron	ENST00000521932	ENST00000521366		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100454863	+	NECAB1	chr8	91929720	+
In-frame	ENST00000395996	ENST00000353107		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
Frame-shit	ENST00000395996	ENST00000522439		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
5CDS-3UTR	ENST00000395996	ENST00000519765		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
In-frame	ENST00000358544	ENST00000353107		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
Frame-shit	ENST00000358544	ENST00000522439		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
5CDS-3UTR	ENST00000358544	ENST00000519765		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
In-frame	ENST00000357162	ENST00000353107		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
Frame-shit	ENST00000357162	ENST00000522439		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
5CDS-3UTR	ENST00000357162	ENST00000519765		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
In-frame	ENST00000355155	ENST00000353107		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
Frame-shit	ENST00000355155	ENST00000522439		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
5CDS-3UTR	ENST00000355155	ENST00000519765		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
In-frame	ENST00000441350	ENST00000353107		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
Frame-shit	ENST00000441350	ENST00000522439		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
5CDS-3UTR	ENST00000441350	ENST00000519765		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
intron-3CDS	ENST00000521932	ENST00000353107		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
intron-3CDS	ENST00000521932	ENST00000522439		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
intron-3UTR	ENST00000521932	ENST00000519765		TCGA	LD	BRCA	TCGA-C8-A27A-01A	VPS13B	chr8	100115348	+	POLR2K	chr8	101164052	+
In-frame	ENST00000388712	ENST00000277141		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
In-frame	ENST00000388712	ENST00000375961		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
In-frame	ENST00000388712	ENST00000375960		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
In-frame	ENST00000388712	ENST00000375957		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
In-frame	ENST00000388712	ENST00000375963		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5CDS-intron	ENST00000388712	ENST00000469004		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5CDS-intron	ENST00000388712	ENST00000375948		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5CDS-intron	ENST00000388712	ENST00000375947		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
Frame-shit	ENST00000388711	ENST00000277141		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
Frame-shit	ENST00000388711	ENST00000375961		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
Frame-shit	ENST00000388711	ENST00000375960		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
Frame-shit	ENST00000388711	ENST00000375957		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
Frame-shit	ENST00000388711	ENST00000375963		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5CDS-intron	ENST00000388711	ENST00000469004		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5CDS-intron	ENST00000388711	ENST00000375948		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5CDS-intron	ENST00000388711	ENST00000375947		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-3CDS	ENST00000257504	ENST00000277141		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-3CDS	ENST00000257504	ENST00000375961		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-3CDS	ENST00000257504	ENST00000375960		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-3CDS	ENST00000257504	ENST00000375957		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-3CDS	ENST00000257504	ENST00000375963		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-intron	ENST00000257504	ENST00000469004		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-intron	ENST00000257504	ENST00000375948		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
5UTR-intron	ENST00000257504	ENST00000375947		TCGA	LD	BRCA	TCGA-C8-A27B-01A	GOLM1	chr9	88692327	-	ZCCHC6	chr9	88920154	-
In-frame	ENST00000334982	ENST00000284509		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
In-frame	ENST00000334982	ENST00000559829		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
5CDS-5UTR	ENST00000334982	ENST00000558959		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
3UTR-3CDS	ENST00000484480	ENST00000284509		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
3UTR-3CDS	ENST00000484480	ENST00000559829		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
3UTR-5UTR	ENST00000484480	ENST00000558959		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000310450	ENST00000284509		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000310450	ENST00000559829		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000310450	ENST00000558959		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
In-frame	ENST00000398602	ENST00000284509		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
In-frame	ENST00000398602	ENST00000559829		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
5CDS-5UTR	ENST00000398602	ENST00000558959		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NAA20	chr20	20013297	+	ATP8B4	chr15	50273491	-
Frame-shit	ENST00000298310	ENST00000216373		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000298310	ENST00000543680		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000298310	ENST00000555794		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000382135	ENST00000216373		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000382135	ENST00000543680		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-intron	ENST00000382135	ENST00000555794		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000545773	ENST00000216373		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000545773	ENST00000543680		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000545773	ENST00000555794		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556925	ENST00000216373		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556925	ENST00000543680		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-intron	ENST00000556925	ENST00000555794		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000546046	ENST00000216373		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000546046	ENST00000543680		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000546046	ENST00000555794		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556672	ENST00000216373		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556672	ENST00000543680		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
intron-intron	ENST00000556672	ENST00000555794		TCGA	LD	BRCA	TCGA-C8-A27B-01A	NEMF	chr14	50300141	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000284548	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000284548	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
Frame-shit	ENST00000570156	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000570156	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5UTR-3CDS	ENST00000366709	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5UTR-intron	ENST00000366709	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
Frame-shit	ENST00000422127	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000422127	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5UTR-3CDS	ENST00000366707	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5UTR-intron	ENST00000366707	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
Frame-shit	ENST00000359599	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000359599	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
intron-3CDS	ENST00000602685	ENST00000336338		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
intron-intron	ENST00000602685	ENST00000492438		TCGA	LD	BRCA	TCGA-C8-A27B-01A	OBSCN	chr1	228465014	+	SPAG17	chr1	118693992	-
intron-3CDS	ENST00000449833	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
intron-3CDS	ENST00000409161	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
intron-3CDS	ENST00000423696	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
In-frame	ENST00000338508	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
intron-3CDS	ENST00000409530	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
intron-3CDS	ENST00000449116	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
intron-3CDS	ENST00000357171	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
intron-3CDS	ENST00000468619	ENST00000300146		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SHANK2	chr11	70858166	-	PATL1	chr11	59434437	-
In-frame	ENST00000546136	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000546136	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000381381	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000381381	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000309359	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000309359	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000451604	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000451604	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000537393	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000537393	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000541536	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000541536	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000396007	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000396007	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000545921	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
In-frame	ENST00000545921	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000541847	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000541847	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000441133	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000441133	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000536850	ENST00000310850		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
intron-3CDS	ENST00000536850	ENST00000356180		TCGA	LD	BRCA	TCGA-C8-A27B-01A	SOX5	chr12	23887618	-	DTD2	chr14	31922550	-
5CDS-intron	ENST00000355078	ENST00000373795		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000355078	ENST00000546138		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000355078	ENST00000466448		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000302763	ENST00000373795		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000302763	ENST00000546138		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000302763	ENST00000466448		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000518825	ENST00000373795		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000518825	ENST00000546138		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
5CDS-intron	ENST00000518825	ENST00000466448		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
intron-intron	ENST00000520400	ENST00000373795		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
intron-intron	ENST00000520400	ENST00000546138		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
intron-intron	ENST00000520400	ENST00000466448		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
intron-intron	ENST00000540387	ENST00000373795		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
intron-intron	ENST00000540387	ENST00000546138		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
intron-intron	ENST00000540387	ENST00000466448		TCGA	LD	BRCA	TCGA-C8-A3M7-01A	CTNNA1	chr5	138147991	+	SRSF4	chr1	29495150	-
3UTR-5UTR	ENST00000600603	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000600603	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000600603	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000600603	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000601638	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000601638	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000601638	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000601638	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000221557	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000221557	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000221557	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000221557	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000598325	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000598325	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000598325	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000598325	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000391842	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000391842	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000391842	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000391842	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000599732	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000599732	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000599732	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000599732	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000601675	ENST00000602212		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000601675	ENST00000602189		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-5UTR	ENST00000601675	ENST00000449844		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
3UTR-intron	ENST00000601675	ENST00000439365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	PTOV1	chr19	50363593	+	NPAS1	chr19	47524263	+
5UTR-5UTR	ENST00000428423	ENST00000377365		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	STAG3L3	chr7	72469199	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000428423	ENST00000523970		TCGA	LD	BRCA	TCGA-C8-A3M8-01A	STAG3L3	chr7	72469199	-	FAM196B	chr5	169311820	-
intron-3CDS	ENST00000584601	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000584601	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000584601	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-intron	ENST00000584601	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000406381	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000406381	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000406381	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-intron	ENST00000406381	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000541774	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000541774	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000541774	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-intron	ENST00000541774	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000445658	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000445658	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000445658	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5CDS-intron	ENST00000445658	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000540147	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000540147	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000540147	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5UTR-intron	ENST00000540147	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000584450	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000584450	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000584450	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5CDS-intron	ENST00000584450	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000269571	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000269571	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
Frame-shit	ENST00000269571	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5CDS-intron	ENST00000269571	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000578199	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000578199	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000578199	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-intron	ENST00000578199	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000540042	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000540042	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000540042	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-intron	ENST00000540042	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000584888	ENST00000360001		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000584888	ENST00000263741		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-3CDS	ENST00000584888	ENST00000545427		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
intron-intron	ENST00000584888	ENST00000459994		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	ERBB2	chr17	37856564	+	SDF4	chr1	1159348	-
5UTR-intron	ENST00000254066	ENST00000392051		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	RARA	chr17	38465538	+	LGALS16	chr19	40148468	+
intron-intron	ENST00000394089	ENST00000392051		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	RARA	chr17	38465538	+	LGALS16	chr19	40148468	+
intron-intron	ENST00000425707	ENST00000392051		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	RARA	chr17	38465538	+	LGALS16	chr19	40148468	+
intron-intron	ENST00000394086	ENST00000392051		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	RARA	chr17	38465538	+	LGALS16	chr19	40148468	+
intron-intron	ENST00000394081	ENST00000392051		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	RARA	chr17	38465538	+	LGALS16	chr19	40148468	+
intron-intron	ENST00000420042	ENST00000392051		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	RARA	chr17	38465538	+	LGALS16	chr19	40148468	+
In-frame	ENST00000294008	ENST00000437682		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	SLX4	chr16	3650980	-	ADAM32	chr8	39114706	+
In-frame	ENST00000294008	ENST00000519315		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	SLX4	chr16	3650980	-	ADAM32	chr8	39114706	+
In-frame	ENST00000294008	ENST00000379907		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	SLX4	chr16	3650980	-	ADAM32	chr8	39114706	+
5CDS-intron	ENST00000294008	ENST00000524303		TCGA	LD	BRCA	TCGA-C8-A8HP-01A	SLX4	chr16	3650980	-	ADAM32	chr8	39114706	+
5CDS-5UTR	ENST00000346672	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-3UTR	ENST00000346672	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-intron	ENST00000346672	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000346672	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-3UTR	ENST00000360962	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-intron	ENST00000360962	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-3UTR	ENST00000527634	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-intron	ENST00000527634	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-3UTR	ENST00000540737	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-intron	ENST00000540737	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000540737	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-3UTR	ENST00000532565	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-intron	ENST00000532565	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-3UTR	ENST00000525449	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-intron	ENST00000525449	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000525449	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000393799		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-3UTR	ENST00000527368	ENST00000530427		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000393800		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000534534		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000524845		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-intron	ENST00000527368	ENST00000265637		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000524904		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000393801		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000265636		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000529710		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000527403		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	C11orf80	chr11	66526567	+	PPP6R3	chr11	68286969	+
Frame-shit	ENST00000341307	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000341307	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000341307	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
Frame-shit	ENST00000356000	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000356000	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000356000	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
3UTR-3CDS	ENST00000538995	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
3UTR-intron	ENST00000538995	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
3UTR-intron	ENST00000538995	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
Frame-shit	ENST00000377819	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000377819	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000377819	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
Frame-shit	ENST00000339997	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000339997	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000339997	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
Frame-shit	ENST00000540798	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000540798	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000540798	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
Frame-shit	ENST00000537981	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000537981	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000537981	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
Frame-shit	ENST00000354497	ENST00000313468		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000354497	ENST00000528492		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-intron	ENST00000354497	ENST00000526542		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	RTN3	chr11	63449250	+	NDUFS8	chr11	67799619	+
5CDS-5UTR	ENST00000389327	ENST00000326956		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389327	ENST00000417664		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389327	ENST00000371320		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389327	ENST00000371319		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389327	ENST00000357475		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389328	ENST00000326956		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389328	ENST00000417664		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389328	ENST00000371320		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389328	ENST00000371319		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000389328	ENST00000357475		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000438773	ENST00000326956		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000438773	ENST00000417664		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000438773	ENST00000371320		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000438773	ENST00000371319		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
5CDS-5UTR	ENST00000438773	ENST00000357475		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
intron-5UTR	ENST00000522504	ENST00000326956		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
intron-5UTR	ENST00000522504	ENST00000417664		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
intron-5UTR	ENST00000522504	ENST00000371320		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
intron-5UTR	ENST00000522504	ENST00000371319		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
intron-5UTR	ENST00000522504	ENST00000357475		TCGA	LD	BRCA	TCGA-C8-A8HQ-01A	TRAPPC9	chr8	140898123	-	SSBP3	chr1	54707182	-
intron-3CDS	ENST00000270460	ENST00000461719		TCGA	LD	BRCA	TCGA-C8-A8HR-01A	EPN1	chr19	56207237	+	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000085079	ENST00000461719		TCGA	LD	BRCA	TCGA-C8-A8HR-01A	EPN1	chr19	56207237	+	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000411543	ENST00000461719		TCGA	LD	BRCA	TCGA-C8-A8HR-01A	EPN1	chr19	56207237	+	IGHJ4	chr14	106330467	-
intron-3CDS	ENST00000591743	ENST00000461719		TCGA	LD	BRCA	TCGA-C8-A8HR-01A	EPN1	chr19	56207237	+	IGHJ4	chr14	106330467	-
5CDS-intron	ENST00000298892	ENST00000281471		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000298892	ENST00000537562		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000298892	ENST00000541931		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000298892	ENST00000536761		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000298892	ENST00000542781		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000298892	ENST00000541541		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000395805	ENST00000281471		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000395805	ENST00000537562		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000395805	ENST00000541931		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000395805	ENST00000536761		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000395805	ENST00000542781		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000395805	ENST00000541541		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000251071	ENST00000281471		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000251071	ENST00000537562		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000251071	ENST00000541931		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000251071	ENST00000536761		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000251071	ENST00000542781		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000251071	ENST00000541541		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000308433	ENST00000281471		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000308433	ENST00000537562		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000308433	ENST00000541931		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000308433	ENST00000536761		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000308433	ENST00000542781		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000308433	ENST00000541541		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000417045	ENST00000281471		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000417045	ENST00000537562		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000417045	ENST00000541931		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000417045	ENST00000536761		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000417045	ENST00000542781		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-intron	ENST00000417045	ENST00000541541		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
intron-intron	ENST00000538387	ENST00000281471		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
intron-5UTR	ENST00000538387	ENST00000537562		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
intron-intron	ENST00000538387	ENST00000541931		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
intron-5UTR	ENST00000538387	ENST00000536761		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
intron-5UTR	ENST00000538387	ENST00000542781		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
intron-intron	ENST00000538387	ENST00000541541		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	CAPRIN2	chr12	30869442	-	AMN1	chr12	31872290	-
5CDS-5UTR	ENST00000279389	ENST00000380898		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000279389	ENST00000447459		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000279389	ENST00000395724		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000279389	ENST00000380897		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000279389	ENST00000569166		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000380495	ENST00000380898		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000380495	ENST00000447459		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000380495	ENST00000395724		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000380495	ENST00000380897		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000380495	ENST00000569166		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000564806	ENST00000380898		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000564806	ENST00000447459		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-5UTR	ENST00000564806	ENST00000395724		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000564806	ENST00000380897		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5CDS-intron	ENST00000564806	ENST00000569166		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
intron-5UTR	ENST00000567037	ENST00000380898		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
intron-5UTR	ENST00000567037	ENST00000447459		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
intron-5UTR	ENST00000567037	ENST00000395724		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
intron-intron	ENST00000567037	ENST00000380897		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
intron-intron	ENST00000567037	ENST00000569166		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	FAM57B	chr16	30040753	-	GSG1L	chr16	27974524	-
5UTR-3CDS	ENST00000443149	ENST00000356079		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
5UTR-3UTR	ENST00000443149	ENST00000461371		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
5UTR-3UTR	ENST00000443149	ENST00000429815		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
intron-3CDS	ENST00000399933	ENST00000356079		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
intron-3UTR	ENST00000399933	ENST00000461371		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
intron-3UTR	ENST00000399933	ENST00000429815		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
intron-3CDS	ENST00000381461	ENST00000356079		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
intron-3UTR	ENST00000381461	ENST00000461371		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
intron-3UTR	ENST00000381461	ENST00000429815		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	KIAA2026	chr9	5910615	-	CYP20A1	chr2	204144782	+
5CDS-5UTR	ENST00000376007	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376007	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376007	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376007	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376007	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376007	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000469577	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000469577	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000469577	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000469577	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000469577	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000469577	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376033	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376033	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376033	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376033	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376033	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376033	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549037	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549037	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549037	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549037	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549037	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549037	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551794	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551794	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551794	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551794	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551794	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551794	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000435971	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000435971	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000435971	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000435971	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000435971	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000435971	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000485195	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000485195	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000485195	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000485195	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000485195	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000485195	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000428775	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000428775	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000428775	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000428775	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000428775	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000428775	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550674	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550674	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550674	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550674	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550674	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550674	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548373	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548373	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548373	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548373	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548373	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000548373	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000439762	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000439762	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000439762	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000439762	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000439762	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000439762	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416335	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416335	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416335	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416335	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416335	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000416335	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000473169	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000473169	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000473169	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000473169	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000473169	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000473169	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550109	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550109	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550109	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550109	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550109	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550109	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550609	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550609	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550609	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550609	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550609	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000550609	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000454306	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000454306	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000454306	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000454306	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000454306	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000454306	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468994	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468994	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468994	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468994	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468994	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468994	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432252	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432252	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432252	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432252	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432252	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432252	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551341	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551341	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551341	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551341	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551341	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000551341	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547457	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547457	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547457	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547457	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547457	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547457	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383464	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383464	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383464	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383464	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383464	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383464	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470109	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470109	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470109	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470109	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470109	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000470109	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383455	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383455	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383455	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383455	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383455	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000383455	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547056	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547056	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547056	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547056	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547056	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547056	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549383	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549383	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549383	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549383	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549383	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549383	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000458561	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000458561	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000458561	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000458561	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000458561	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000458561	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000466607	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000466607	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000466607	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000466607	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000466607	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000466607	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414956	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414956	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414956	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414956	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414956	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414956	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547669	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547669	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547669	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547669	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547669	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547669	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549768	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549768	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549768	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549768	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549768	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000549768	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430737	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430737	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430737	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430737	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430737	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000430737	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000484613	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000484613	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000484613	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000484613	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000484613	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000484613	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000422962	ENST00000491161		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000422962	ENST00000376073		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000422962	ENST00000340027		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000422962	ENST00000376072		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000422962	ENST00000376071		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000497117		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000420556		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000432392		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000457547		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000419728		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000498490		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000433654		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000447248		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000418936		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000420485		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000491762		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000439584		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000415123		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000436623		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000455448		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000459657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000455825		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000435674		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000412603		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000438663		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000495500		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000383478		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000383477		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000383476		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000400241		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000494590		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000430599		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000446756		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000441372		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000453657		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000489751		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000437517		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000436253		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000452296		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
intron-intron	ENST00000422962	ENST00000419086		TCGA	LD	BRCA	TCGA-D8-A13Y-01A	PRRC2A	chr6	31604385	+	NCR3	chr6	31557676	-
Frame-shit	ENST00000380393	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000380393	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000380393	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000380393	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000380393	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000216877	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000216877	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000216877	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000216877	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000216877	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000358719	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000358719	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000358719	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000358719	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000358719	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000399903	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000399903	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000399903	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000399903	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000399903	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000425918	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000425918	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000425918	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000425918	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000425918	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000318266	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000318266	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000318266	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000318266	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000318266	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000356147	ENST00000507656		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000356147	ENST00000451299		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000356147	ENST00000309439		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000356147	ENST00000510270		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000356147	ENST00000512680		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	PTPRA	chr20	3018775	+	ANAPC10	chr4	145916755	-
5UTR-3UTR	ENST00000599227	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000269829	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000594384	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
3UTR-3UTR	ENST00000596597	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000596825	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000333581	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
intron-3UTR	ENST00000599953	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000596652	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000600044	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000600220	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000596929	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
5UTR-3UTR	ENST00000595981	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
intron-3UTR	ENST00000415203	ENST00000413518		TCGA	LD	BRCA	TCGA-D8-A13Z-01A	ZNF544	chr19	58741828	+	ERVK3-1	chr19	58826114	+
intron-3CDS	ENST00000306729	ENST00000264828		TCGA	LD	BRCA	TCGA-D8-A140-01A	ASPSCR1	chr17	79939176	+	COL5A3	chr19	10114821	-
intron-3CDS	ENST00000306739	ENST00000264828		TCGA	LD	BRCA	TCGA-D8-A140-01A	ASPSCR1	chr17	79939176	+	COL5A3	chr19	10114821	-
intron-3CDS	ENST00000580534	ENST00000264828		TCGA	LD	BRCA	TCGA-D8-A140-01A	ASPSCR1	chr17	79939176	+	COL5A3	chr19	10114821	-
intron-3CDS	ENST00000581647	ENST00000264828		TCGA	LD	BRCA	TCGA-D8-A140-01A	ASPSCR1	chr17	79939176	+	COL5A3	chr19	10114821	-
intron-3CDS	ENST00000582404	ENST00000264828		TCGA	LD	BRCA	TCGA-D8-A140-01A	ASPSCR1	chr17	79939176	+	COL5A3	chr19	10114821	-
5CDS-5UTR	ENST00000262320	ENST00000374864		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-5UTR	ENST00000262320	ENST00000535650		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-5UTR	ENST00000262320	ENST00000262650		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-intron	ENST00000262320	ENST00000483727		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-5UTR	ENST00000354866	ENST00000374864		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-5UTR	ENST00000354866	ENST00000535650		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-5UTR	ENST00000354866	ENST00000262650		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-intron	ENST00000354866	ENST00000483727		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
intron-5UTR	ENST00000481769	ENST00000374864		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
intron-5UTR	ENST00000481769	ENST00000535650		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
intron-5UTR	ENST00000481769	ENST00000262650		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
intron-intron	ENST00000481769	ENST00000483727		TCGA	LD	BRCA	TCGA-D8-A140-01A	AXIN1	chr16	396148	-	ITCH	chr20	32957200	+
5CDS-intron	ENST00000535622	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000331457		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000433341		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	DRG1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000535622	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400246	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000266091	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382105	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400249	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382112	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000382111	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000400248	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000494060	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
5CDS-intron	ENST00000536766	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000400242	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000443326		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000414585		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000540643		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000432498		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000443011		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000400289		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000400288		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
intron-intron	ENST00000539165	ENST00000474741		TCGA	LD	BRCA	TCGA-D8-A140-01A	DEPDC5	chr22	32215211	+	SFI1	chr22	31924676	+
In-frame	ENST00000495880	ENST00000356770		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
In-frame	ENST00000495880	ENST00000394830		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
In-frame	ENST00000495880	ENST00000296302		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000495880	ENST00000337303		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000495880	ENST00000410007		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000495880	ENST00000409057		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000495880	ENST00000409114		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000495880	ENST00000409767		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
In-frame	ENST00000296483	ENST00000356770		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
In-frame	ENST00000296483	ENST00000394830		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
In-frame	ENST00000296483	ENST00000296302		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000296483	ENST00000337303		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000296483	ENST00000410007		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000296483	ENST00000409057		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000296483	ENST00000409114		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
5CDS-intron	ENST00000296483	ENST00000409767		TCGA	LD	BRCA	TCGA-D8-A140-01A	DUSP7	chr3	52087956	-	PBRM1	chr3	52588895	-
3UTR-3CDS	ENST00000471231	ENST00000390560		TCGA	LD	BRCA	TCGA-D8-A140-01A	FBXL19	chr16	30959777	+	IGHJ6	chr14	106329450	-
3UTR-3CDS	ENST00000338343	ENST00000390560		TCGA	LD	BRCA	TCGA-D8-A140-01A	FBXL19	chr16	30959777	+	IGHJ6	chr14	106329450	-
intron-3CDS	ENST00000562319	ENST00000390560		TCGA	LD	BRCA	TCGA-D8-A140-01A	FBXL19	chr16	30959777	+	IGHJ6	chr14	106329450	-
3UTR-3CDS	ENST00000380310	ENST00000390560		TCGA	LD	BRCA	TCGA-D8-A140-01A	FBXL19	chr16	30959777	+	IGHJ6	chr14	106329450	-
intron-3CDS	ENST00000565690	ENST00000390560		TCGA	LD	BRCA	TCGA-D8-A140-01A	FBXL19	chr16	30959777	+	IGHJ6	chr14	106329450	-
Frame-shit	ENST00000341845	ENST00000337273		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
Frame-shit	ENST00000341845	ENST00000454282		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-3UTR	ENST00000341845	ENST00000447967		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-3UTR	ENST00000341845	ENST00000523768		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000341845	ENST00000513944		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000341845	ENST00000506351		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
Frame-shit	ENST00000430046	ENST00000337273		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
Frame-shit	ENST00000430046	ENST00000454282		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-3UTR	ENST00000430046	ENST00000447967		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-3UTR	ENST00000430046	ENST00000523768		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000430046	ENST00000513944		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000430046	ENST00000506351		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
Frame-shit	ENST00000512348	ENST00000337273		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
Frame-shit	ENST00000512348	ENST00000454282		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-3UTR	ENST00000512348	ENST00000447967		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-3UTR	ENST00000512348	ENST00000523768		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000512348	ENST00000513944		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000512348	ENST00000506351		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
intron-3CDS	ENST00000287761	ENST00000337273		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
intron-3CDS	ENST00000287761	ENST00000454282		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
intron-3UTR	ENST00000287761	ENST00000447967		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
intron-3UTR	ENST00000287761	ENST00000523768		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
intron-intron	ENST00000287761	ENST00000513944		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
intron-intron	ENST00000287761	ENST00000506351		TCGA	LD	BRCA	TCGA-D8-A140-01A	FCHO2	chr5	72337142	+	TNPO1	chr5	72178294	+
5CDS-intron	ENST00000314073	ENST00000377791		TCGA	LD	BRCA	TCGA-D8-A140-01A	GLTSCR1L	chr6	42821476	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000314073	ENST00000602637		TCGA	LD	BRCA	TCGA-D8-A140-01A	GLTSCR1L	chr6	42821476	+	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000394168	ENST00000377791		TCGA	LD	BRCA	TCGA-D8-A140-01A	GLTSCR1L	chr6	42821476	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000394168	ENST00000602637		TCGA	LD	BRCA	TCGA-D8-A140-01A	GLTSCR1L	chr6	42821476	+	HIST1H2AC	chr6	26138282	+
In-frame	ENST00000294785	ENST00000295688		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000294785	ENST00000368259		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000294785	ENST00000368261		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000294785	ENST00000472765		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
5CDS-intron	ENST00000294785	ENST00000368256		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368063	ENST00000295688		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368063	ENST00000368259		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368063	ENST00000368261		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368063	ENST00000472765		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
5CDS-intron	ENST00000368063	ENST00000368256		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000535857	ENST00000295688		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000535857	ENST00000368259		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000535857	ENST00000368261		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000535857	ENST00000472765		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
5CDS-intron	ENST00000535857	ENST00000368256		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000392212	ENST00000295688		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000392212	ENST00000368259		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000392212	ENST00000368261		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000392212	ENST00000472765		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
5CDS-intron	ENST00000392212	ENST00000368256		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
3UTR-3CDS	ENST00000459963	ENST00000295688		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
3UTR-3CDS	ENST00000459963	ENST00000368259		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
3UTR-3CDS	ENST00000459963	ENST00000368261		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
3UTR-3CDS	ENST00000459963	ENST00000472765		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
3UTR-intron	ENST00000459963	ENST00000368256		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368065	ENST00000295688		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368065	ENST00000368259		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368065	ENST00000368261		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000368065	ENST00000472765		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
5CDS-intron	ENST00000368065	ENST00000368256		TCGA	LD	BRCA	TCGA-D8-A140-01A	NCSTN	chr1	160324080	+	CCT3	chr1	156290816	-
In-frame	ENST00000264833	ENST00000535342		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
In-frame	ENST00000264833	ENST00000392769		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
In-frame	ENST00000264833	ENST00000541355		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
In-frame	ENST00000264833	ENST00000537949		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
In-frame	ENST00000264833	ENST00000317442		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000264833	ENST00000580482		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000590841	ENST00000535342		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000590841	ENST00000392769		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000590841	ENST00000541355		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000590841	ENST00000537949		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000590841	ENST00000317442		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
intron-5UTR	ENST00000590841	ENST00000580482		TCGA	LD	BRCA	TCGA-D8-A140-01A	OLFM2	chr19	10046980	-	CEP112	chr17	63685336	-
In-frame	ENST00000573500	ENST00000602452		TCGA	LD	BRCA	TCGA-D8-A140-01A	PCTP	chr17	53851256	+	MEI4	chr6	78400375	+
3UTR-3CDS	ENST00000576221	ENST00000602452		TCGA	LD	BRCA	TCGA-D8-A140-01A	PCTP	chr17	53851256	+	MEI4	chr6	78400375	+
In-frame	ENST00000268896	ENST00000602452		TCGA	LD	BRCA	TCGA-D8-A140-01A	PCTP	chr17	53851256	+	MEI4	chr6	78400375	+
In-frame	ENST00000576183	ENST00000602452		TCGA	LD	BRCA	TCGA-D8-A140-01A	PCTP	chr17	53851256	+	MEI4	chr6	78400375	+
In-frame	ENST00000325214	ENST00000602452		TCGA	LD	BRCA	TCGA-D8-A140-01A	PCTP	chr17	53851256	+	MEI4	chr6	78400375	+
Frame-shit	ENST00000358598	ENST00000589222		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358598	ENST00000407086		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358598	ENST00000390652		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358598	ENST00000408905		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358598	ENST00000588462		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358598	ENST00000585744		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358598	ENST00000588874		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000358598	ENST00000585812		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000589222		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000407086		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000390652		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000408905		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000588462		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000585744		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000392711	ENST00000588874		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000392711	ENST00000585812		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000589222		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000407086		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000390652		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000408905		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000588462		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000585744		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000589228	ENST00000588874		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000589228	ENST00000585812		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000589222		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000407086		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000390652		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000408905		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000588462		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000585744		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000536854	ENST00000588874		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000536854	ENST00000585812		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000589222		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000407086		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000390652		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000408905		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000588462		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000585744		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000586397	ENST00000588874		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000586397	ENST00000585812		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000589222		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000407086		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000390652		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000408905		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000588462		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000585744		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000588188	ENST00000588874		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000588188	ENST00000585812		TCGA	LD	BRCA	TCGA-D8-A140-01A	PRKAR1A	chr17	66511717	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000262013	ENST00000570618		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000262013	ENST00000434041		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000262013	ENST00000575698		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000262013	ENST00000575960		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000262013	ENST00000571246		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000262013	ENST00000450673		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-3UTR	ENST00000505279	ENST00000570618		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000505279	ENST00000434041		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000505279	ENST00000575698		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000505279	ENST00000575960		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000505279	ENST00000571246		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000505279	ENST00000450673		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-3UTR	ENST00000357122	ENST00000570618		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000357122	ENST00000434041		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000357122	ENST00000575698		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000357122	ENST00000575960		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000357122	ENST00000571246		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000357122	ENST00000450673		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
intron-3UTR	ENST00000509724	ENST00000570618		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
intron-intron	ENST00000509724	ENST00000434041		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
intron-intron	ENST00000509724	ENST00000575698		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
intron-intron	ENST00000509724	ENST00000575960		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
intron-intron	ENST00000509724	ENST00000571246		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
intron-intron	ENST00000509724	ENST00000450673		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-3UTR	ENST00000510283	ENST00000570618		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000510283	ENST00000434041		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000510283	ENST00000575698		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000510283	ENST00000575960		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000510283	ENST00000571246		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000510283	ENST00000450673		TCGA	LD	BRCA	TCGA-D8-A140-01A	SPAG9	chr17	49118862	-	ARL17B	chr17	44352784	-
Frame-shit	ENST00000299413	ENST00000263398		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000526025		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000449691		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000360158		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000415148		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000437706		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000433354		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000428726		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000526669		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000433892		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000278386		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000434472		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000352818		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
5CDS-intron	ENST00000299413	ENST00000528922		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000263398		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000526025		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000449691		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000360158		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000415148		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000437706		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000433354		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000428726		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000526669		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000433892		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000278386		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000434472		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000352818		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-intron	ENST00000532066	ENST00000528922		TCGA	LD	BRCA	TCGA-D8-A140-01A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000307179	ENST00000267842		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000307179	ENST00000380902		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
5CDS-5UTR	ENST00000307179	ENST00000544960		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000433963	ENST00000267842		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000433963	ENST00000380902		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
5CDS-5UTR	ENST00000433963	ENST00000544960		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000396444	ENST00000267842		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000396444	ENST00000380902		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
5CDS-5UTR	ENST00000396444	ENST00000544960		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000425032	ENST00000267842		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
Frame-shit	ENST00000425032	ENST00000380902		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
5CDS-5UTR	ENST00000425032	ENST00000544960		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
3UTR-3CDS	ENST00000558892	ENST00000267842		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
3UTR-3CDS	ENST00000558892	ENST00000380902		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
3UTR-5UTR	ENST00000558892	ENST00000544960		TCGA	LD	BRCA	TCGA-D8-A140-01A	USP8	chr15	50731374	+	SLC27A2	chr15	50489697	+
In-frame	ENST00000311015	ENST00000392313		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000311015	ENST00000262815		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
5CDS-intron	ENST00000311015	ENST00000586189		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000380870	ENST00000392313		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000380870	ENST00000262815		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
5CDS-intron	ENST00000380870	ENST00000586189		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000597810	ENST00000392313		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000597810	ENST00000262815		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
5CDS-intron	ENST00000597810	ENST00000586189		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000594245	ENST00000392313		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
In-frame	ENST00000594245	ENST00000262815		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
5CDS-intron	ENST00000594245	ENST00000586189		TCGA	LD	BRCA	TCGA-D8-A140-01A	ZNF738	chr19	21544660	+	MAU2	chr19	19449654	+
Frame-shit	ENST00000298375	ENST00000375664		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000298375	ENST00000375646		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000298375	ENST00000347934		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000298375	ENST00000354911		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000298375	ENST00000428935		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
5CDS-intron	ENST00000298375	ENST00000532233		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
3UTR-3CDS	ENST00000525281	ENST00000375664		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
3UTR-3CDS	ENST00000525281	ENST00000375646		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
3UTR-3CDS	ENST00000525281	ENST00000347934		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
3UTR-3CDS	ENST00000525281	ENST00000354911		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
3UTR-3CDS	ENST00000525281	ENST00000428935		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
3UTR-intron	ENST00000525281	ENST00000532233		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000532248	ENST00000375664		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000532248	ENST00000375646		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000532248	ENST00000347934		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000532248	ENST00000354911		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000532248	ENST00000428935		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
5CDS-intron	ENST00000532248	ENST00000532233		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000334019	ENST00000375664		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000334019	ENST00000375646		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000334019	ENST00000347934		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000334019	ENST00000354911		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000334019	ENST00000428935		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
5CDS-intron	ENST00000334019	ENST00000532233		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000345253	ENST00000375664		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000345253	ENST00000375646		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000345253	ENST00000347934		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000345253	ENST00000354911		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000345253	ENST00000428935		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
5CDS-intron	ENST00000345253	ENST00000532233		TCGA	LD	BRCA	TCGA-D8-A142-01A	AKR1E2	chr10	4884696	+	WAC	chr10	28872328	+
Frame-shit	ENST00000233057	ENST00000234195		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000233057	ENST00000469469		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000233057	ENST00000354545		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000233057	ENST00000406384		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000233057	ENST00000407257		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000233057	ENST00000417700		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000233057	ENST00000402091		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
Frame-shit	ENST00000395127	ENST00000234195		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000395127	ENST00000469469		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000395127	ENST00000354545		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000395127	ENST00000406384		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000395127	ENST00000407257		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000395127	ENST00000417700		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000395127	ENST00000402091		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
In-frame	ENST00000405334	ENST00000234195		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000405334	ENST00000469469		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000405334	ENST00000354545		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000405334	ENST00000406384		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000405334	ENST00000407257		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000405334	ENST00000417700		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
5CDS-intron	ENST00000405334	ENST00000402091		TCGA	LD	BRCA	TCGA-D8-A142-01A	EIF2AK2	chr2	37362627	-	RMDN2	chr2	38216684	+
Frame-shit	ENST00000263063	ENST00000377833		TCGA	LD	BRCA	TCGA-D8-A142-01A	MTPAP	chr10	30611320	-	CUBN	chr10	16867081	-
5CDS-intron	ENST00000263063	ENST00000377823		TCGA	LD	BRCA	TCGA-D8-A142-01A	MTPAP	chr10	30611320	-	CUBN	chr10	16867081	-
Frame-shit	ENST00000358107	ENST00000377833		TCGA	LD	BRCA	TCGA-D8-A142-01A	MTPAP	chr10	30611320	-	CUBN	chr10	16867081	-
5CDS-intron	ENST00000358107	ENST00000377823		TCGA	LD	BRCA	TCGA-D8-A142-01A	MTPAP	chr10	30611320	-	CUBN	chr10	16867081	-
5UTR-3CDS	ENST00000488290	ENST00000377833		TCGA	LD	BRCA	TCGA-D8-A142-01A	MTPAP	chr10	30611320	-	CUBN	chr10	16867081	-
5UTR-intron	ENST00000488290	ENST00000377823		TCGA	LD	BRCA	TCGA-D8-A142-01A	MTPAP	chr10	30611320	-	CUBN	chr10	16867081	-
In-frame	ENST00000369023	ENST00000369043		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
In-frame	ENST00000369023	ENST00000535655		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000369023	ENST00000224652		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
In-frame	ENST00000369023	ENST00000369040		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000369023	ENST00000540606		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
In-frame	ENST00000369023	ENST00000543447		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5CDS-intron	ENST00000369023	ENST00000481784		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000489266	ENST00000369043		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000489266	ENST00000535655		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000489266	ENST00000224652		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000489266	ENST00000369040		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000489266	ENST00000540606		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-3CDS	ENST00000489266	ENST00000543447		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5UTR-intron	ENST00000489266	ENST00000481784		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000538652	ENST00000369043		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000538652	ENST00000535655		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000538652	ENST00000224652		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000538652	ENST00000369040		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000538652	ENST00000540606		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000538652	ENST00000543447		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5CDS-intron	ENST00000538652	ENST00000481784		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000369017	ENST00000369043		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000369017	ENST00000535655		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
In-frame	ENST00000369017	ENST00000224652		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000369017	ENST00000369040		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
In-frame	ENST00000369017	ENST00000540606		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000369017	ENST00000543447		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
5CDS-intron	ENST00000369017	ENST00000481784		TCGA	LD	BRCA	TCGA-D8-A142-01A	NSMCE4A	chr10	123724801	-	ATE1	chr10	123503373	-
In-frame	ENST00000222005	ENST00000264818		TCGA	LD	BRCA	TCGA-D8-A147-01A	CDC37	chr19	10514054	-	TYK2	chr19	10464910	-
In-frame	ENST00000222005	ENST00000524462		TCGA	LD	BRCA	TCGA-D8-A147-01A	CDC37	chr19	10514054	-	TYK2	chr19	10464910	-
In-frame	ENST00000222005	ENST00000525621		TCGA	LD	BRCA	TCGA-D8-A147-01A	CDC37	chr19	10514054	-	TYK2	chr19	10464910	-
5CDS-intron	ENST00000222005	ENST00000529370		TCGA	LD	BRCA	TCGA-D8-A147-01A	CDC37	chr19	10514054	-	TYK2	chr19	10464910	-
5CDS-intron	ENST00000222005	ENST00000529422		TCGA	LD	BRCA	TCGA-D8-A147-01A	CDC37	chr19	10514054	-	TYK2	chr19	10464910	-
In-frame	ENST00000315677	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000315677	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000581527	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000581527	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000400147	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000400147	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000400149	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000400149	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000400155	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000400155	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000400150	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000400150	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000584874	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000584874	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000534970	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000534970	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000539435	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000539435	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000581699	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000581699	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
In-frame	ENST00000400145	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000400145	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
Frame-shit	ENST00000515196	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5CDS-intron	ENST00000515196	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5UTR-3CDS	ENST00000478161	ENST00000578921		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
5UTR-intron	ENST00000478161	ENST00000577284		TCGA	LD	BRCA	TCGA-D8-A147-01A	DLGAP1	chr18	3814059	-	RAB31	chr18	9792151	+
Frame-shit	ENST00000228862	ENST00000228887		TCGA	LD	BRCA	TCGA-D8-A147-01A	DUSP16	chr12	12653453	-	GPRC5D	chr12	13093783	-
In-frame	ENST00000228862	ENST00000396333		TCGA	LD	BRCA	TCGA-D8-A147-01A	DUSP16	chr12	12653453	-	GPRC5D	chr12	13093783	-
intron-3CDS	ENST00000298573	ENST00000228887		TCGA	LD	BRCA	TCGA-D8-A147-01A	DUSP16	chr12	12653453	-	GPRC5D	chr12	13093783	-
intron-3CDS	ENST00000298573	ENST00000396333		TCGA	LD	BRCA	TCGA-D8-A147-01A	DUSP16	chr12	12653453	-	GPRC5D	chr12	13093783	-
5UTR-3CDS	ENST00000545864	ENST00000228887		TCGA	LD	BRCA	TCGA-D8-A147-01A	DUSP16	chr12	12653453	-	GPRC5D	chr12	13093783	-
5UTR-3CDS	ENST00000545864	ENST00000396333		TCGA	LD	BRCA	TCGA-D8-A147-01A	DUSP16	chr12	12653453	-	GPRC5D	chr12	13093783	-
Frame-shit	ENST00000405015	ENST00000356842		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000405015	ENST00000359629		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000405015	ENST00000538214		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
In-frame	ENST00000405015	ENST00000537768		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000405015	ENST00000335712		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000405015	ENST00000477659		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000405015	ENST00000358510		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000431489	ENST00000356842		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000431489	ENST00000359629		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000431489	ENST00000538214		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
In-frame	ENST00000431489	ENST00000537768		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000431489	ENST00000335712		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000431489	ENST00000477659		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000431489	ENST00000358510		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000354487	ENST00000356842		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000354487	ENST00000359629		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000354487	ENST00000538214		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
In-frame	ENST00000354487	ENST00000537768		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000354487	ENST00000335712		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000354487	ENST00000477659		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000354487	ENST00000358510		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000263991	ENST00000356842		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000263991	ENST00000359629		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000263991	ENST00000538214		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
In-frame	ENST00000263991	ENST00000537768		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000263991	ENST00000335712		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000263991	ENST00000477659		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000263991	ENST00000358510		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000405289	ENST00000356842		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000405289	ENST00000359629		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000405289	ENST00000538214		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
In-frame	ENST00000405289	ENST00000537768		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000405289	ENST00000335712		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000405289	ENST00000477659		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000405289	ENST00000358510		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000496857	ENST00000356842		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000496857	ENST00000359629		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000496857	ENST00000538214		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000496857	ENST00000537768		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000496857	ENST00000335712		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000496857	ENST00000477659		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000496857	ENST00000358510		TCGA	LD	BRCA	TCGA-D8-A147-01A	EHBP1	chr2	63101667	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000257261	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
Frame-shit	ENST00000257261	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
Frame-shit	ENST00000257261	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
Frame-shit	ENST00000257261	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522056	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522056	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522056	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522056	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000278840	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000278840	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000278840	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000278840	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000521849	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000521849	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000521849	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000521849	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000574708	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000574708	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000574708	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000574708	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522639	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522639	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522639	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
5UTR-3CDS	ENST00000522639	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000517839	ENST00000533626		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000517839	ENST00000537635		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000517839	ENST00000309828		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-3CDS	ENST00000517839	ENST00000449102		TCGA	LD	BRCA	TCGA-D8-A147-01A	FADS2	chr11	61583898	+	EIF3F	chr11	8014434	+
intron-intron	ENST00000479212	ENST00000206423		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000479212	ENST00000439685		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000479212	ENST00000475181		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
5CDS-intron	ENST00000358160	ENST00000206423		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
5CDS-intron	ENST00000358160	ENST00000439685		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
5CDS-intron	ENST00000358160	ENST00000475181		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000452134	ENST00000206423		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000452134	ENST00000439685		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000452134	ENST00000475181		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000472026	ENST00000206423		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000472026	ENST00000439685		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000472026	ENST00000475181		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000440446	ENST00000206423		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000440446	ENST00000439685		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
intron-intron	ENST00000440446	ENST00000475181		TCGA	LD	BRCA	TCGA-D8-A147-01A	GRAMD1C	chr3	113557783	+	CCDC80	chr3	112362304	-
Frame-shit	ENST00000366730	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366730	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366730	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000391865	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000391865	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000391865	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366726	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366726	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366726	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000312726	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000312726	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000312726	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366728	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366728	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366728	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366723	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366723	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366723	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366722	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366722	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366722	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366721	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366721	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366721	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366718	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366718	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366718	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
3UTR-3CDS	ENST00000470040	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
3UTR-3CDS	ENST00000470040	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
3UTR-5UTR	ENST00000470040	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366716	ENST00000515837		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
Frame-shit	ENST00000366716	ENST00000334888		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
5CDS-5UTR	ENST00000366716	ENST00000398979		TCGA	LD	BRCA	TCGA-D8-A147-01A	GUK1	chr1	228334639	+	TMEM216	chr11	61160703	+
In-frame	ENST00000278715	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000278715	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000278715	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000278715	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000278715	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000278715	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000537841	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000537841	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000537841	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000537841	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000537841	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000537841	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000542729	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000542729	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000542729	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000542729	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000542729	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000542729	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000442944	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000442944	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000442944	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000442944	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000442944	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000442944	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000544387	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000544387	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000544387	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000544387	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000544387	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000544387	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000543090	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000543090	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000543090	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000543090	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000543090	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000543090	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000392841	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000392841	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000392841	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000392841	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
In-frame	ENST00000392841	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-intron	ENST00000392841	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
intron-3CDS	ENST00000534956	ENST00000405015		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
intron-3CDS	ENST00000534956	ENST00000431489		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
intron-3CDS	ENST00000534956	ENST00000354487		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
intron-3CDS	ENST00000534956	ENST00000263991		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
intron-3CDS	ENST00000534956	ENST00000405289		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
intron-intron	ENST00000534956	ENST00000496857		TCGA	LD	BRCA	TCGA-D8-A147-01A	HMBS	chr11	118963521	+	EHBP1	chr2	63053222	+
5CDS-5UTR	ENST00000598742	ENST00000430815		TCGA	LD	BRCA	TCGA-D8-A147-01A	RPS19	chr19	42365281	+	C21orf91-OT1	chr21	19136178	-
5UTR-5UTR	ENST00000221975	ENST00000430815		TCGA	LD	BRCA	TCGA-D8-A147-01A	RPS19	chr19	42365281	+	C21orf91-OT1	chr21	19136178	-
5CDS-5UTR	ENST00000593863	ENST00000430815		TCGA	LD	BRCA	TCGA-D8-A147-01A	RPS19	chr19	42365281	+	C21orf91-OT1	chr21	19136178	-
In-frame	ENST00000317357	ENST00000340001		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
In-frame	ENST00000317357	ENST00000453985		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
In-frame	ENST00000317357	ENST00000370732		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
5CDS-intron	ENST00000317357	ENST00000482072		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
5CDS-intron	ENST00000317357	ENST00000495634		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
intron-3CDS	ENST00000494935	ENST00000340001		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
intron-3CDS	ENST00000494935	ENST00000453985		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
intron-3CDS	ENST00000494935	ENST00000370732		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
intron-intron	ENST00000494935	ENST00000482072		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
intron-intron	ENST00000494935	ENST00000495634		TCGA	LD	BRCA	TCGA-D8-A147-01A	SOBP	chr6	107854814	+	ABCA9	chr17	67008224	-
intron-3CDS	ENST00000461188	ENST00000382369		TCGA	LD	BRCA	TCGA-D8-A147-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	264722	-
intron-3CDS	ENST00000461188	ENST00000360321		TCGA	LD	BRCA	TCGA-D8-A147-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	264722	-
intron-3CDS	ENST00000461188	ENST00000400269		TCGA	LD	BRCA	TCGA-D8-A147-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	264722	-
Frame-shit	ENST00000354200	ENST00000382369		TCGA	LD	BRCA	TCGA-D8-A147-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	264722	-
Frame-shit	ENST00000354200	ENST00000360321		TCGA	LD	BRCA	TCGA-D8-A147-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	264722	-
Frame-shit	ENST00000354200	ENST00000400269		TCGA	LD	BRCA	TCGA-D8-A147-01A	TBC1D20	chr20	442980	-	C20orf96	chr20	264722	-
Frame-shit	ENST00000245932	ENST00000310054		TCGA	LD	BRCA	TCGA-D8-A147-01A	VASP	chr19	46011034	+	CYP2S1	chr19	41711863	+
Frame-shit	ENST00000245932	ENST00000542619		TCGA	LD	BRCA	TCGA-D8-A147-01A	VASP	chr19	46011034	+	CYP2S1	chr19	41711863	+
3UTR-3CDS	ENST00000586619	ENST00000310054		TCGA	LD	BRCA	TCGA-D8-A147-01A	VASP	chr19	46011034	+	CYP2S1	chr19	41711863	+
3UTR-3CDS	ENST00000586619	ENST00000542619		TCGA	LD	BRCA	TCGA-D8-A147-01A	VASP	chr19	46011034	+	CYP2S1	chr19	41711863	+
In-frame	ENST00000369577	ENST00000230053		TCGA	LD	BRCA	TCGA-D8-A147-01A	ZNF292	chr6	87865477	+	B3GAT2	chr6	71603975	-
In-frame	ENST00000339907	ENST00000230053		TCGA	LD	BRCA	TCGA-D8-A147-01A	ZNF292	chr6	87865477	+	B3GAT2	chr6	71603975	-
In-frame	ENST00000392985	ENST00000230053		TCGA	LD	BRCA	TCGA-D8-A147-01A	ZNF292	chr6	87865477	+	B3GAT2	chr6	71603975	-
3UTR-3CDS	ENST00000369578	ENST00000230053		TCGA	LD	BRCA	TCGA-D8-A147-01A	ZNF292	chr6	87865477	+	B3GAT2	chr6	71603975	-
Frame-shit	ENST00000536514	ENST00000336338		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000536514	ENST00000492438		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
Frame-shit	ENST00000537173	ENST00000336338		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000537173	ENST00000492438		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
In-frame	ENST00000367876	ENST00000336338		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000367876	ENST00000492438		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
In-frame	ENST00000367875	ENST00000336338		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
5CDS-intron	ENST00000367875	ENST00000492438		TCGA	LD	BRCA	TCGA-D8-A1J8-01A	POGK	chr1	166810325	+	SPAG17	chr1	118693992	-
intron-5UTR	ENST00000318560	ENST00000354484		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133589842	+	ADAMTSL2	chr9	136401685	+
intron-5UTR	ENST00000318560	ENST00000393061		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133589842	+	ADAMTSL2	chr9	136401685	+
intron-5UTR	ENST00000318560	ENST00000393060		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133589842	+	ADAMTSL2	chr9	136401685	+
Frame-shit	ENST00000318560	ENST00000359428		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133748424	+	NUP214	chr9	134014668	+
Frame-shit	ENST00000318560	ENST00000411637		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133748424	+	NUP214	chr9	134014668	+
Frame-shit	ENST00000318560	ENST00000451030		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133748424	+	NUP214	chr9	134014668	+
5CDS-intron	ENST00000318560	ENST00000483497		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133748424	+	NUP214	chr9	134014668	+
5CDS-intron	ENST00000318560	ENST00000465486		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	ABL1	chr9	133748424	+	NUP214	chr9	134014668	+
Frame-shit	ENST00000277198	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000277198	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000277198	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000277198	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000277198	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000277198	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000277198	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000277198	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000277198	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000297979	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000297979	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000297979	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000297979	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000297979	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000297979	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000297979	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000297979	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000297979	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000375315	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000375315	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000375315	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
Frame-shit	ENST00000375315	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000375315	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000375315	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000375315	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000375315	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-intron	ENST00000375315	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000395357	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000395357	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000395357	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000395357	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000395357	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000395357	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000395357	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000395357	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000395357	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000425634	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000425634	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000425634	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000425634	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000425634	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000425634	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000425634	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000425634	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000425634	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000433691	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000433691	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000433691	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000433691	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000433691	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000433691	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000433691	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000433691	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000433691	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000473778	ENST00000449054		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000473778	ENST00000379238		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000473778	ENST00000360802		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-3CDS	ENST00000473778	ENST00000379239		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000473778	ENST00000539807		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000473778	ENST00000418786		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000473778	ENST00000379225		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000473778	ENST00000379235		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
intron-intron	ENST00000473778	ENST00000480885		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	C9orf3	chr9	97555200	+	UBAP2	chr9	33960876	-
5CDS-3UTR	ENST00000431794	ENST00000393892		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000431794	ENST00000472031		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000431794	ENST00000591072		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000431794	ENST00000592446		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000431794	ENST00000393888		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-3UTR	ENST00000268852	ENST00000393892		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000268852	ENST00000472031		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000268852	ENST00000591072		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000268852	ENST00000592446		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000268852	ENST00000393888		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-3UTR	ENST00000586007	ENST00000393892		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000586007	ENST00000472031		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000586007	ENST00000591072		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000586007	ENST00000592446		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000586007	ENST00000393888		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-3UTR	ENST00000544606	ENST00000393892		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000544606	ENST00000472031		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000544606	ENST00000591072		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000544606	ENST00000592446		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5CDS-intron	ENST00000544606	ENST00000393888		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
intron-3UTR	ENST00000590081	ENST00000393892		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
intron-intron	ENST00000590081	ENST00000472031		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
intron-intron	ENST00000590081	ENST00000591072		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
intron-intron	ENST00000590081	ENST00000592446		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
intron-intron	ENST00000590081	ENST00000393888		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	MYO19	chr17	34888357	-	CNP	chr17	40128611	+
5UTR-intron	ENST00000498603	ENST00000259608		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	SEC61B	chr9	101984925	+	SIT1	chr9	35650944	-
5UTR-intron	ENST00000498603	ENST00000474403		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	SEC61B	chr9	101984925	+	SIT1	chr9	35650944	-
5CDS-intron	ENST00000223641	ENST00000259608		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	SEC61B	chr9	101984925	+	SIT1	chr9	35650944	-
5CDS-intron	ENST00000223641	ENST00000474403		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	SEC61B	chr9	101984925	+	SIT1	chr9	35650944	-
3UTR-intron	ENST00000481573	ENST00000259608		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	SEC61B	chr9	101984925	+	SIT1	chr9	35650944	-
3UTR-intron	ENST00000481573	ENST00000474403		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	SEC61B	chr9	101984925	+	SIT1	chr9	35650944	-
In-frame	ENST00000394395	ENST00000318217		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000394395	ENST00000394649		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000394395	ENST00000579584		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000394395	ENST00000584232		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000394395	ENST00000583621		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
In-frame	ENST00000586023	ENST00000318217		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000586023	ENST00000394649		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000586023	ENST00000579584		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000586023	ENST00000584232		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000586023	ENST00000583621		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
In-frame	ENST00000225396	ENST00000318217		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000225396	ENST00000394649		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000225396	ENST00000579584		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000225396	ENST00000584232		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000225396	ENST00000583621		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
In-frame	ENST00000417170	ENST00000318217		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000417170	ENST00000394649		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000417170	ENST00000579584		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000417170	ENST00000584232		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000417170	ENST00000583621		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
3UTR-3CDS	ENST00000591992	ENST00000318217		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
3UTR-3CDS	ENST00000591992	ENST00000394649		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
3UTR-intron	ENST00000591992	ENST00000579584		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
3UTR-intron	ENST00000591992	ENST00000584232		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
3UTR-intron	ENST00000591992	ENST00000583621		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TADA2A	chr17	35802753	+	MYO1D	chr17	30821933	-
In-frame	ENST00000535648	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
5CDS-intron	ENST00000535648	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-3CDS	ENST00000346706	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-intron	ENST00000346706	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
In-frame	ENST00000340094	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
5CDS-intron	ENST00000340094	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-3CDS	ENST00000345230	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-intron	ENST00000345230	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
In-frame	ENST00000350763	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
5CDS-intron	ENST00000350763	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
Frame-shit	ENST00000341037	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
5CDS-intron	ENST00000341037	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-3CDS	ENST00000423613	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-intron	ENST00000423613	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-3CDS	ENST00000537320	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-intron	ENST00000537320	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
Frame-shit	ENST00000542877	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
5CDS-intron	ENST00000542877	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-3CDS	ENST00000481475	ENST00000259455		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
intron-intron	ENST00000481475	ENST00000477471		TCGA	LD	BRCA	TCGA-D8-A1J9-01A	TNC	chr9	117819432	-	GABBR2	chr9	101340354	-
Frame-shit	ENST00000264908	ENST00000335016		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	ANXA3	chr4	79475642	+	BMP2K	chr4	79831764	+
5CDS-intron	ENST00000264908	ENST00000502871		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	ANXA3	chr4	79475642	+	BMP2K	chr4	79831764	+
5UTR-3CDS	ENST00000512884	ENST00000335016		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	ANXA3	chr4	79475642	+	BMP2K	chr4	79831764	+
5UTR-intron	ENST00000512884	ENST00000502871		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	ANXA3	chr4	79475642	+	BMP2K	chr4	79831764	+
5UTR-3CDS	ENST00000503570	ENST00000335016		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	ANXA3	chr4	79475642	+	BMP2K	chr4	79831764	+
5UTR-intron	ENST00000503570	ENST00000502871		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	ANXA3	chr4	79475642	+	BMP2K	chr4	79831764	+
In-frame	ENST00000264899	ENST00000509176		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
In-frame	ENST00000264899	ENST00000333691		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000264899	ENST00000432775		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000264899	ENST00000504150		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
In-frame	ENST00000325942	ENST00000509176		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
In-frame	ENST00000325942	ENST00000333691		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000325942	ENST00000432775		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000325942	ENST00000504150		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
In-frame	ENST00000264895	ENST00000509176		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
In-frame	ENST00000264895	ENST00000333691		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000264895	ENST00000432775		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000264895	ENST00000504150		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	FRAS1	chr4	78987170	+	CCSER1	chr4	92519723	+
intron-3CDS	ENST00000472863	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000472863	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000498678	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000498678	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000460160	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000460160	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000476342	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000476342	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
5UTR-3CDS	ENST00000552000	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
5UTR-3CDS	ENST00000552000	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000470495	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000470495	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000311626	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000311626	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000490677	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000490677	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000485909	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000485909	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000489475	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000489475	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000465120	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000465120	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB3	chr17	46681842	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000484302	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB6	chr17	46681077	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000484302	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB6	chr17	46681077	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000225648	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB6	chr17	46681077	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000225648	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB6	chr17	46681077	-	SKAP1	chr17	46214699	-
5UTR-3CDS	ENST00000490419	ENST00000336915		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB6	chr17	46681077	-	SKAP1	chr17	46214699	-
5UTR-3CDS	ENST00000490419	ENST00000584924		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	HOXB6	chr17	46681077	-	SKAP1	chr17	46214699	-
5UTR-intron	ENST00000513000	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000513000	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000513000	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000513000	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000513000	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000513000	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-5UTR	ENST00000513000	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000509777	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000509777	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000509777	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000509777	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000509777	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000509777	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-5UTR	ENST00000509777	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000262992	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000262992	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000262992	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000262992	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000262992	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000262992	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-5UTR	ENST00000262992	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000308502	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000308502	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000308502	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000308502	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000308502	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000308502	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-5UTR	ENST00000308502	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000508116	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000508116	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000508116	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000508116	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000508116	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000508116	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-5UTR	ENST00000508116	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000507861	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000507861	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000507861	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000507861	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000507861	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-intron	ENST00000507861	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5UTR-5UTR	ENST00000507861	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000506217	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000506217	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000506217	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000506217	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000506217	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000506217	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-5UTR	ENST00000506217	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000508084	ENST00000394235		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000508084	ENST00000379549		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000508084	ENST00000379550		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000508084	ENST00000265495		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000508084	ENST00000358635		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-intron	ENST00000508084	ENST00000510408		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
intron-5UTR	ENST00000508084	ENST00000515489		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	INPP4B	chr4	143383816	-	ELF2	chr4	139949503	-
5CDS-5UTR	ENST00000259021	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000259021	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000259021	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000259021	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000259021	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000259021	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000454930	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000454930	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000454930	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000454930	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000454930	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000454930	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000509773	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000509773	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000509773	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000509773	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000509773	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000509773	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000510819	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000510819	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000510819	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000510819	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000510819	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000510819	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000424009	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000424009	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000424009	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000424009	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000424009	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000424009	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000503935	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000503935	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000503935	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000503935	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000503935	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000503935	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000435742	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000435742	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000435742	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000435742	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000435742	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000435742	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000513980	ENST00000393328		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000513980	ENST00000393331		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000513980	ENST00000347630		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000513980	ENST00000504102		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000513980	ENST00000503676		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000513980	ENST00000513080		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	KAT7	chr17	47875920	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000167462	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000167462	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000167462	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000167462	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000167462	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-intron	ENST00000167462	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000375227	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000375227	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000375227	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000375227	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000375227	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-intron	ENST00000375227	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000392550	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000392550	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000392550	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000392550	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000392550	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-intron	ENST00000392550	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000578363	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000578363	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000578363	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000578363	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000578363	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
5UTR-intron	ENST00000578363	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000577200	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000577200	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000577200	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000577200	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
intron-5UTR	ENST00000577200	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
intron-intron	ENST00000577200	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	LLGL2	chr17	73521906	+	CA10	chr17	50008492	-
In-frame	ENST00000371714	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000371714	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000371710	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000371710	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000337809	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000337809	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000435686	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000435686	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000447887	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000447887	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000453295	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000453295	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000428468	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000428468	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000530544	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000530544	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000531828	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000531828	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000361556	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000361556	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
3UTR-3CDS	ENST00000473207	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
3UTR-intron	ENST00000473207	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000462759	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000462759	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
In-frame	ENST00000486942	ENST00000334194		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
5CDS-intron	ENST00000486942	ENST00000471598		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	OSBPL9	chr1	52215867	+	CYP4Z1	chr1	47533247	+
intron-3CDS	ENST00000494753	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000494753	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000494753	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000494753	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000494753	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-5UTR	ENST00000494753	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000411567	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000411567	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000411567	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000411567	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000411567	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000411567	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000276914	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000276914	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000276914	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000276914	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000276914	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000276914	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000380465	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000380465	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000380465	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000380465	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
Frame-shit	ENST00000380465	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000380465	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000380464	ENST00000570565		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000380464	ENST00000442502		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000380464	ENST00000340813		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000380464	ENST00000451037		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000380464	ENST00000285273		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-5UTR	ENST00000380464	ENST00000571918		TCGA	LD	BRCA	TCGA-D8-A1JA-01A	PLIN2	chr9	19123563	-	CA10	chr17	49825178	-
intron-3CDS	ENST00000318560	ENST00000359428		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ABL1	chr9	133589842	+	NUP214	chr9	134007983	+
intron-3CDS	ENST00000318560	ENST00000411637		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ABL1	chr9	133589842	+	NUP214	chr9	134007983	+
intron-3CDS	ENST00000318560	ENST00000451030		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ABL1	chr9	133589842	+	NUP214	chr9	134007983	+
intron-intron	ENST00000318560	ENST00000483497		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ABL1	chr9	133589842	+	NUP214	chr9	134007983	+
intron-intron	ENST00000318560	ENST00000465486		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ABL1	chr9	133589842	+	NUP214	chr9	134007983	+
In-frame	ENST00000539909	ENST00000372725		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000539909	ENST00000372724		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000539909	ENST00000287239		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000539909	ENST00000372714		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000539909	ENST00000372711		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
5CDS-intron	ENST00000539909	ENST00000490365		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000286621	ENST00000372725		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000286621	ENST00000372724		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000286621	ENST00000287239		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000286621	ENST00000372714		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000286621	ENST00000372711		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
5CDS-intron	ENST00000286621	ENST00000490365		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000372734	ENST00000372725		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000372734	ENST00000372724		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000372734	ENST00000287239		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000372734	ENST00000372714		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000372734	ENST00000372711		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
5CDS-intron	ENST00000372734	ENST00000490365		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000541550	ENST00000372725		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000541550	ENST00000372724		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000541550	ENST00000287239		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000541550	ENST00000372714		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
In-frame	ENST00000541550	ENST00000372711		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
5CDS-intron	ENST00000541550	ENST00000490365		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-3CDS	ENST00000467840	ENST00000372725		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-3CDS	ENST00000467840	ENST00000372724		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-3CDS	ENST00000467840	ENST00000287239		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-3CDS	ENST00000467840	ENST00000372714		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-3CDS	ENST00000467840	ENST00000372711		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-intron	ENST00000467840	ENST00000490365		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ADK	chr10	76074503	+	KAT6B	chr10	76719728	+
intron-3CDS	ENST00000397228	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000397228	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000397228	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000397228	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-3CDS	ENST00000523887	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000523887	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523887	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000523887	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
In-frame	ENST00000276461	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000276461	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000276461	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000276461	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-3CDS	ENST00000518586	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000518586	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000518586	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000518586	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-3CDS	ENST00000335171	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000335171	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000335171	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000335171	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-3CDS	ENST00000523107	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000523107	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000523107	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
intron-intron	ENST00000523107	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
In-frame	ENST00000519638	ENST00000425967		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000397091		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000447712		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000341462		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000532791		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000397113		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000356207		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000335922		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000326324		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000519638	ENST00000397103		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-5UTR	ENST00000519638	ENST00000397108		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
5CDS-intron	ENST00000519638	ENST00000496629		TCGA	LD	BRCA	TCGA-D8-A1JC-01A	ERLIN2	chr8	37607370	+	FGFR1	chr8	38315052	-
In-frame	ENST00000368194	ENST00000368192		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
5CDS-intron	ENST00000368194	ENST00000326786		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
5CDS-intron	ENST00000368194	ENST00000460850		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
intron-3CDS	ENST00000487682	ENST00000368192		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
intron-intron	ENST00000487682	ENST00000326786		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
intron-intron	ENST00000487682	ENST00000460850		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
In-frame	ENST00000361409	ENST00000368192		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
5CDS-intron	ENST00000361409	ENST00000326786		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
5CDS-intron	ENST00000361409	ENST00000460850		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
intron-3CDS	ENST00000315174	ENST00000368192		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
intron-intron	ENST00000315174	ENST00000326786		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
intron-intron	ENST00000315174	ENST00000460850		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	ARHGEF11	chr1	157014091	-	ETV3	chr1	157095771	-
In-frame	ENST00000572515	ENST00000314980		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	NFKBIB	chr19	39390851	+	LGALS7B	chr19	39281329	+
Frame-shit	ENST00000392079	ENST00000314980		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	NFKBIB	chr19	39390851	+	LGALS7B	chr19	39281329	+
In-frame	ENST00000313582	ENST00000314980		TCGA	LD	BRCA	TCGA-D8-A1JF-01A	NFKBIB	chr19	39390851	+	LGALS7B	chr19	39281329	+
5CDS-intron	ENST00000265000	ENST00000504618		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000265000	ENST00000296504		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000512285	ENST00000504618		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000512285	ENST00000296504		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
intron-intron	ENST00000502407	ENST00000504618		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
intron-intron	ENST00000502407	ENST00000296504		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000380158	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000380158	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000380158	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000264572	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000264572	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000264572	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000408927	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000408927	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000408927	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
3UTR-intron	ENST00000512857	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
3UTR-intron	ENST00000512857	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
3UTR-3UTR	ENST00000512857	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000453712	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000453712	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000453712	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000339360	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000339360	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000339360	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000408900	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000408900	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000408900	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	RAP1GDS1	chr4	99214666	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000424789	ENST00000450662		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	TANC2	chr17	61086987	+	EFCAB3	chr17	60421393	+
5CDS-intron	ENST00000424789	ENST00000305286		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	TANC2	chr17	61086987	+	EFCAB3	chr17	60421393	+
5CDS-intron	ENST00000389520	ENST00000450662		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	TANC2	chr17	61086987	+	EFCAB3	chr17	60421393	+
5CDS-intron	ENST00000389520	ENST00000305286		TCGA	LD	BRCA	TCGA-D8-A1JG-01B	TANC2	chr17	61086987	+	EFCAB3	chr17	60421393	+
5UTR-3CDS	ENST00000374875	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5UTR-intron	ENST00000374875	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
Frame-shit	ENST00000265371	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000265371	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
In-frame	ENST00000374867	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000374867	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
In-frame	ENST00000395995	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000395995	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
In-frame	ENST00000374821	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000374821	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
In-frame	ENST00000374822	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000374822	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
In-frame	ENST00000374823	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000374823	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
In-frame	ENST00000374816	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000374816	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
Frame-shit	ENST00000432372	ENST00000332853		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000432372	ENST00000298454		TCGA	LD	BRCA	TCGA-D8-A1JH-01A	NRP1	chr10	33619636	-	VSTM4	chr10	50227820	-
Frame-shit	ENST00000342287	ENST00000253925		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000342287	ENST00000389547		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5CDS-3UTR	ENST00000342287	ENST00000530548		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000373487	ENST00000253925		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000373487	ENST00000389547		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5CDS-3UTR	ENST00000373487	ENST00000530548		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000373489	ENST00000253925		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000373489	ENST00000389547		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5CDS-3UTR	ENST00000373489	ENST00000530548		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5UTR-3CDS	ENST00000373483	ENST00000253925		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5UTR-3CDS	ENST00000373483	ENST00000389547		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5UTR-3UTR	ENST00000373483	ENST00000530548		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000447726	ENST00000253925		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000447726	ENST00000389547		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
5CDS-3UTR	ENST00000447726	ENST00000530548		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000538998	ENST00000253925		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
intron-3CDS	ENST00000538998	ENST00000389547		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
intron-3UTR	ENST00000538998	ENST00000530548		TCGA	LD	BRCA	TCGA-D8-A1JI-01A	PBX3	chr9	128510902	+	PPFIA1	chr11	70218321	+
Frame-shit	ENST00000251808	ENST00000446175		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102631925	+	LRRC63	chr13	46802800	+
Frame-shit	ENST00000251808	ENST00000595396		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102631925	+	LRRC63	chr13	46802800	+
Frame-shit	ENST00000395927	ENST00000446175		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102631925	+	LRRC63	chr13	46802800	+
Frame-shit	ENST00000395927	ENST00000595396		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102631925	+	LRRC63	chr13	46802800	+
intron-3CDS	ENST00000517674	ENST00000446175		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102631925	+	LRRC63	chr13	46802800	+
intron-3CDS	ENST00000517674	ENST00000595396		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102631925	+	LRRC63	chr13	46802800	+
In-frame	ENST00000251808	ENST00000537855		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000379096		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000518937		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000519303		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000517427		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000520527		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000448733		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000251808	ENST00000379097		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
5CDS-5UTR	ENST00000251808	ENST00000523395		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000537855		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000379096		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000518937		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000519303		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000517427		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000520527		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000448733		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
In-frame	ENST00000395927	ENST00000379097		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
5CDS-5UTR	ENST00000395927	ENST00000523395		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000537855		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000379096		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000518937		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000519303		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000517427		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000520527		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000448733		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-3CDS	ENST00000517674	ENST00000379097		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-5UTR	ENST00000517674	ENST00000523395		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	GRHL2	chr8	102565010	+	TPD52	chr8	80954903	-
intron-intron	ENST00000368314	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000368314	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5UTR-intron	ENST00000476956	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5UTR-intron	ENST00000476956	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000609447	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000609447	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000356799	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000356799	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000477776	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000477776	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000309649	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000309649	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000489534	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000489534	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000608991	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
intron-intron	ENST00000608991	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5UTR-intron	ENST00000610153	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5UTR-intron	ENST00000610153	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5UTR-intron	ENST00000480444	ENST00000498112		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5UTR-intron	ENST00000480444	ENST00000329722		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	RNF146	chr6	127588240	+	C6orf58	chr6	127911232	+
5CDS-intron	ENST00000424789	ENST00000538928		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000424789	ENST00000584529		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000424789	ENST00000290866		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000424789	ENST00000428043		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000424789	ENST00000490216		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000424789	ENST00000577647		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000424789	ENST00000290863		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-5UTR	ENST00000424789	ENST00000421982		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-5UTR	ENST00000424789	ENST00000413513		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000538928		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000584529		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000290866		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000428043		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000490216		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000577647		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-intron	ENST00000389520	ENST00000290863		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-5UTR	ENST00000389520	ENST00000421982		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
5CDS-5UTR	ENST00000389520	ENST00000413513		TCGA	LD	BRCA	TCGA-D8-A1JJ-01A	TANC2	chr17	61457187	+	ACE	chr17	61563918	+
intron-3CDS	ENST00000544392	ENST00000369144		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF3A	chr10	120818909	-
intron-3CDS	ENST00000544392	ENST00000541549		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF3A	chr10	120818909	-
In-frame	ENST00000369151	ENST00000369144		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF3A	chr10	120818909	-
In-frame	ENST00000369151	ENST00000541549		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF3A	chr10	120818909	-
In-frame	ENST00000340214	ENST00000369144		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF3A	chr10	120818909	-
In-frame	ENST00000340214	ENST00000541549		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF3A	chr10	120818909	-
intron-intron	ENST00000544392	ENST00000374436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
intron-intron	ENST00000544392	ENST00000374443		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
intron-intron	ENST00000544392	ENST00000374450		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
intron-intron	ENST00000544392	ENST00000462894		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000369151	ENST00000374436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000369151	ENST00000374443		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000369151	ENST00000374450		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000369151	ENST00000462894		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000340214	ENST00000374436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000340214	ENST00000374443		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000340214	ENST00000374450		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-intron	ENST00000340214	ENST00000462894		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CACUL1	chr10	120488807	-	EIF6	chr10	120818909	-
5CDS-3UTR	ENST00000378847	ENST00000474155		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-5UTR	ENST00000378847	ENST00000277570		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-intron	ENST00000378847	ENST00000379200		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
3UTR-3UTR	ENST00000487696	ENST00000474155		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
3UTR-5UTR	ENST00000487696	ENST00000277570		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
3UTR-intron	ENST00000487696	ENST00000379200		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-3UTR	ENST00000378845	ENST00000474155		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-5UTR	ENST00000378845	ENST00000277570		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-intron	ENST00000378845	ENST00000379200		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
In-frame	ENST00000348520	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000348520	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000348520	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000348520	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000348520	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000348520	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000348520	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000348520	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000380038	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000380038	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000389744	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000389744	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557575	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000557575	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000553286	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000553286	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000347839	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000347839	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000555836	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000555836	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000334553	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000334553	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000246489	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000246489	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000557450	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000557450	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000554280	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000554280	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000452929	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000452929	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000440884		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000416682		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000429436		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000303622		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000216288		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000553942		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000445352	ENST00000335102		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
5CDS-3UTR	ENST00000445352	ENST00000561071		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	KLC1	chr14	104136620	+	MARK3	chr14	103915256	+
In-frame	ENST00000424789	ENST00000450662		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TANC2	chr17	61278318	+	EFCAB3	chr17	60451175	+
5CDS-intron	ENST00000424789	ENST00000305286		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TANC2	chr17	61278318	+	EFCAB3	chr17	60451175	+
In-frame	ENST00000389520	ENST00000450662		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TANC2	chr17	61278318	+	EFCAB3	chr17	60451175	+
5CDS-intron	ENST00000389520	ENST00000305286		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TANC2	chr17	61278318	+	EFCAB3	chr17	60451175	+
Frame-shit	ENST00000456845	ENST00000416426		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000456845	ENST00000284073		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000456845	ENST00000322684		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000456845	ENST00000442934		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000456845	ENST00000579180		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000456845	ENST00000579505		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000412303	ENST00000416426		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000412303	ENST00000284073		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000412303	ENST00000322684		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000412303	ENST00000442934		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000412303	ENST00000579180		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000412303	ENST00000579505		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000456397	ENST00000416426		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000456397	ENST00000284073		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000456397	ENST00000322684		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000456397	ENST00000442934		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000456397	ENST00000579180		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000456397	ENST00000579505		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000397070	ENST00000416426		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000397070	ENST00000284073		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000397070	ENST00000322684		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000397070	ENST00000442934		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000397070	ENST00000579180		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000397070	ENST00000579505		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000522434	ENST00000416426		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000522434	ENST00000284073		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000522434	ENST00000322684		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000522434	ENST00000442934		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5UTR-3CDS	ENST00000522434	ENST00000579180		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
5UTR-intron	ENST00000522434	ENST00000579505		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	TM2D2	chr8	38852837	-	MSI2	chr17	55478740	+
In-frame	ENST00000403766	ENST00000376355		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000403766	ENST00000444838		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000403766	ENST00000376360		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000403766	ENST00000376354		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000403766	ENST00000339105		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
Frame-shit	ENST00000376440	ENST00000376355		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376440	ENST00000444838		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376440	ENST00000376360		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376440	ENST00000376354		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000376440	ENST00000339105		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
intron-3CDS	ENST00000460562	ENST00000376355		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000460562	ENST00000444838		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000460562	ENST00000376360		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000460562	ENST00000376354		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
intron-intron	ENST00000460562	ENST00000339105		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBAC2	chr13	99890808	+	CLYBL	chr13	100543572	+
Frame-shit	ENST00000338677	ENST00000332145		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBE2Q2	chr15	76136187	+	ODF3L1	chr15	76017449	+
Frame-shit	ENST00000267938	ENST00000332145		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBE2Q2	chr15	76136187	+	ODF3L1	chr15	76017449	+
Frame-shit	ENST00000569423	ENST00000332145		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBE2Q2	chr15	76136187	+	ODF3L1	chr15	76017449	+
intron-3CDS	ENST00000561851	ENST00000332145		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBE2Q2	chr15	76136187	+	ODF3L1	chr15	76017449	+
intron-3CDS	ENST00000562635	ENST00000332145		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UBE2Q2	chr15	76136187	+	ODF3L1	chr15	76017449	+
5CDS-intron	ENST00000279907	ENST00000549100		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UHRF1BP1L	chr12	100536370	-	DEPDC4	chr12	100650004	-
5CDS-intron	ENST00000279907	ENST00000416321		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UHRF1BP1L	chr12	100536370	-	DEPDC4	chr12	100650004	-
5CDS-intron	ENST00000356828	ENST00000549100		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UHRF1BP1L	chr12	100536370	-	DEPDC4	chr12	100650004	-
5CDS-intron	ENST00000356828	ENST00000416321		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UHRF1BP1L	chr12	100536370	-	DEPDC4	chr12	100650004	-
intron-intron	ENST00000545232	ENST00000549100		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UHRF1BP1L	chr12	100536370	-	DEPDC4	chr12	100650004	-
intron-intron	ENST00000545232	ENST00000416321		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	UHRF1BP1L	chr12	100536370	-	DEPDC4	chr12	100650004	-
Frame-shit	ENST00000262085	ENST00000409469		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF282	chr7	148910906	+	CUL1	chr7	148463653	+
Frame-shit	ENST00000262085	ENST00000602748		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF282	chr7	148910906	+	CUL1	chr7	148463653	+
Frame-shit	ENST00000262085	ENST00000325222		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF282	chr7	148910906	+	CUL1	chr7	148463653	+
Frame-shit	ENST00000479907	ENST00000409469		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF282	chr7	148910906	+	CUL1	chr7	148463653	+
Frame-shit	ENST00000479907	ENST00000602748		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF282	chr7	148910906	+	CUL1	chr7	148463653	+
Frame-shit	ENST00000479907	ENST00000325222		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF282	chr7	148910906	+	CUL1	chr7	148463653	+
5CDS-5UTR	ENST00000369577	ENST00000369582		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF292	chr6	87865477	+	CGA	chr6	87797925	-
5CDS-5UTR	ENST00000339907	ENST00000369582		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF292	chr6	87865477	+	CGA	chr6	87797925	-
5CDS-5UTR	ENST00000392985	ENST00000369582		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF292	chr6	87865477	+	CGA	chr6	87797925	-
3UTR-5UTR	ENST00000369578	ENST00000369582		TCGA	LD	BRCA	TCGA-D8-A1JK-01A	ZNF292	chr6	87865477	+	CGA	chr6	87797925	-
Frame-shit	ENST00000261721	ENST00000450735		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000261721	ENST00000304231		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000261721	ENST00000399166		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000261721	ENST00000426485		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000261721	ENST00000500334		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000379403	ENST00000450735		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000379403	ENST00000304231		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000379403	ENST00000399166		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000379403	ENST00000426485		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000379403	ENST00000500334		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560015	ENST00000450735		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560015	ENST00000304231		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560015	ENST00000399166		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560015	ENST00000426485		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
intron-intron	ENST00000560015	ENST00000500334		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	BTBD1	chr15	83735503	-	HOMER2	chr15	83561593	-
In-frame	ENST00000264982	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
In-frame	ENST00000264982	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000264982	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000264982	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-intron	ENST00000264982	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
In-frame	ENST00000542237	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
In-frame	ENST00000542237	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000542237	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000542237	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-intron	ENST00000542237	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
intron-3CDS	ENST00000489254	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
intron-3CDS	ENST00000489254	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
intron-5UTR	ENST00000489254	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
intron-5UTR	ENST00000489254	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
intron-intron	ENST00000489254	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
Frame-shit	ENST00000484888	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
Frame-shit	ENST00000484888	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000484888	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000484888	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-intron	ENST00000484888	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
In-frame	ENST00000481834	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
In-frame	ENST00000481834	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000481834	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000481834	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-intron	ENST00000481834	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5UTR-3CDS	ENST00000478673	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5UTR-3CDS	ENST00000478673	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5UTR-5UTR	ENST00000478673	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5UTR-5UTR	ENST00000478673	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5UTR-intron	ENST00000478673	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
Frame-shit	ENST00000464035	ENST00000383202		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
Frame-shit	ENST00000464035	ENST00000236698		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000464035	ENST00000434713		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-5UTR	ENST00000464035	ENST00000480733		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
5CDS-intron	ENST00000464035	ENST00000536929		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CEP70	chr3	138289160	-	STAG1	chr3	136287703	-
Frame-shit	ENST00000423902	ENST00000291458		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
Frame-shit	ENST00000423902	ENST00000497726		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
5CDS-5UTR	ENST00000423902	ENST00000466854		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
5CDS-5UTR	ENST00000423902	ENST00000479899		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000524602	ENST00000291458		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000524602	ENST00000497726		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000524602	ENST00000466854		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000524602	ENST00000479899		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000525508	ENST00000291458		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000525508	ENST00000497726		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000525508	ENST00000466854		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000525508	ENST00000479899		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000529472	ENST00000291458		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000529472	ENST00000497726		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000529472	ENST00000466854		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000529472	ENST00000479899		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CHD7	chr8	61743136	+	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000401046	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000401046	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000401046	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000401046	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000401046	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000401046	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000401046	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000401046	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000401046	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000419823	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000419823	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000419823	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000419823	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000419823	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000419823	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000419823	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000419823	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000419823	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000534324	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000534324	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000534324	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000534324	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000534324	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000534324	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000534324	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000534324	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000534324	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000287899	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000287899	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000287899	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000287899	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000287899	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000287899	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000287899	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000287899	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000287899	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000537208	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000537208	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000537208	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000537208	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000537208	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000537208	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000537208	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000537208	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000537208	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000542737	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000542737	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000542737	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000542737	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000542737	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000542737	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000542737	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000542737	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000542737	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000497820	ENST00000447632		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000497820	ENST00000413473		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000497820	ENST00000262675		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000497820	ENST00000451380		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-3CDS	ENST00000497820	ENST00000371750		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000497820	ENST00000371747		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000497820	ENST00000262676		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-intron	ENST00000497820	ENST00000530004		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
intron-5UTR	ENST00000497820	ENST00000534098		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	CYB5RL	chr1	54656411	-	TTC39A	chr1	51756297	-
Frame-shit	ENST00000280886	ENST00000262238		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DIP2C	chr10	735434	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000381496	ENST00000262238		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DIP2C	chr10	735434	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000540204	ENST00000262238		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DIP2C	chr10	735434	-	YY1	chr14	100728641	+
In-frame	ENST00000585892	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
5CDS-3UTR	ENST00000585892	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
In-frame	ENST00000314646	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
5CDS-3UTR	ENST00000314646	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
In-frame	ENST00000359692	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
5CDS-3UTR	ENST00000359692	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
In-frame	ENST00000389253	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
5CDS-3UTR	ENST00000389253	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
In-frame	ENST00000355667	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
5CDS-3UTR	ENST00000355667	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
In-frame	ENST00000408974	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
5CDS-3UTR	ENST00000408974	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
intron-3CDS	ENST00000591819	ENST00000321826		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
intron-3UTR	ENST00000591819	ENST00000471843		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	DNM2	chr19	10913034	+	P2RY11	chr19	10224309	+
In-frame	ENST00000251808	ENST00000442628		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	GRHL2	chr8	102661727	+	NRBP2	chr8	144922401	-
5CDS-5UTR	ENST00000251808	ENST00000327830		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	GRHL2	chr8	102661727	+	NRBP2	chr8	144922401	-
In-frame	ENST00000395927	ENST00000442628		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	GRHL2	chr8	102661727	+	NRBP2	chr8	144922401	-
5CDS-5UTR	ENST00000395927	ENST00000327830		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	GRHL2	chr8	102661727	+	NRBP2	chr8	144922401	-
intron-3CDS	ENST00000517674	ENST00000442628		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	GRHL2	chr8	102661727	+	NRBP2	chr8	144922401	-
intron-5UTR	ENST00000517674	ENST00000327830		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	GRHL2	chr8	102661727	+	NRBP2	chr8	144922401	-
5CDS-5UTR	ENST00000297185	ENST00000502271		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000297185	ENST00000504924		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000297185	ENST00000510591		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
5CDS-intron	ENST00000297185	ENST00000507646		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
intron-5UTR	ENST00000501917	ENST00000502271		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
intron-5UTR	ENST00000501917	ENST00000504924		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
intron-5UTR	ENST00000501917	ENST00000510591		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
intron-intron	ENST00000501917	ENST00000507646		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	HSPA9	chr5	137903144	-	ARL15	chr5	53182543	-
5UTR-3CDS	ENST00000361413	ENST00000320316		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-3CDS	ENST00000361413	ENST00000571362		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-intron	ENST00000361413	ENST00000576955		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-intron	ENST00000361413	ENST00000454255		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-5UTR	ENST00000361413	ENST00000570753		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-3CDS	ENST00000542606	ENST00000320316		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-3CDS	ENST00000542606	ENST00000571362		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-intron	ENST00000542606	ENST00000576955		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-intron	ENST00000542606	ENST00000454255		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-5UTR	ENST00000542606	ENST00000570753		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-3CDS	ENST00000572370	ENST00000320316		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-3CDS	ENST00000572370	ENST00000571362		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-intron	ENST00000572370	ENST00000576955		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-intron	ENST00000572370	ENST00000454255		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
5UTR-5UTR	ENST00000572370	ENST00000570753		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-3CDS	ENST00000589033	ENST00000320316		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-3CDS	ENST00000589033	ENST00000571362		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-intron	ENST00000589033	ENST00000576955		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-intron	ENST00000589033	ENST00000454255		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-5UTR	ENST00000589033	ENST00000570753		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-3CDS	ENST00000575027	ENST00000320316		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-3CDS	ENST00000575027	ENST00000571362		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-intron	ENST00000575027	ENST00000576955		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-intron	ENST00000575027	ENST00000454255		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
intron-5UTR	ENST00000575027	ENST00000570753		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	KIAA0753	chr17	6543957	-	PHF23	chr17	7140979	-
In-frame	ENST00000240488	ENST00000437508		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
5CDS-intron	ENST00000240488	ENST00000494872		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
5CDS-intron	ENST00000240488	ENST00000338700		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
3UTR-3CDS	ENST00000503967	ENST00000437508		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
3UTR-intron	ENST00000503967	ENST00000494872		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
3UTR-intron	ENST00000503967	ENST00000338700		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
intron-3CDS	ENST00000504860	ENST00000437508		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
intron-intron	ENST00000504860	ENST00000494872		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
intron-intron	ENST00000504860	ENST00000338700		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	MND1	chr4	154265892	+	TRIM2	chr4	154249682	+
In-frame	ENST00000517671	ENST00000366690		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000517671	ENST00000473894		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
In-frame	ENST00000296930	ENST00000366690		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000296930	ENST00000473894		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
In-frame	ENST00000351986	ENST00000366690		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000351986	ENST00000473894		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
In-frame	ENST00000393820	ENST00000366690		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
5CDS-intron	ENST00000393820	ENST00000473894		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	NPM1	chr5	170815010	+	RAB4A	chr1	229422233	+
In-frame	ENST00000261712	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000261712	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000261712	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000261712	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000457654	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000457654	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000457654	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
In-frame	ENST00000457654	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	PSMD11	chr17	30781637	+	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000515852	ENST00000380009		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
intron-intron	ENST00000515852	ENST00000504763		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
intron-3CDS	ENST00000506817	ENST00000380009		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
intron-intron	ENST00000506817	ENST00000504763		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
Frame-shit	ENST00000379982	ENST00000380009		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
5CDS-intron	ENST00000379982	ENST00000504763		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
Frame-shit	ENST00000504179	ENST00000380009		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
5CDS-intron	ENST00000504179	ENST00000504763		TCGA	LD	BRCA	TCGA-D8-A1JL-01A	RHOBTB3	chr5	95119667	+	ARSK	chr5	94918620	+
5CDS-5UTR	ENST00000375735	ENST00000573369		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	DYNC2H1	chr11	103182762	+	U95743.1	chr16	13861223	-
intron-5UTR	ENST00000334267	ENST00000573369		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	DYNC2H1	chr11	103182762	+	U95743.1	chr16	13861223	-
5CDS-5UTR	ENST00000398093	ENST00000573369		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	DYNC2H1	chr11	103182762	+	U95743.1	chr16	13861223	-
Frame-shit	ENST00000437099	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000437099	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000437099	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000437099	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000437099	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000437099	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000323816	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000323816	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000323816	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000323816	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000323816	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000323816	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000432992	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000432992	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000432992	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000432992	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000432992	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000432992	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000540214	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000540214	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000540214	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000540214	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000540214	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000540214	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000585266	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000585266	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000585266	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000585266	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000585266	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000585266	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000580865	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000580865	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000580865	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000580865	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000580865	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000580865	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000583882	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000583882	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000583882	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000583882	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000583882	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
intron-3CDS	ENST00000583882	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000542249	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000542249	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000542249	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000542249	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000542249	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000542249	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000396115	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000396115	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000396115	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000396115	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000396115	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
Frame-shit	ENST00000396115	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
In-frame	ENST00000579158	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
In-frame	ENST00000579158	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
In-frame	ENST00000579158	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
In-frame	ENST00000579158	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
In-frame	ENST00000579158	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
In-frame	ENST00000579158	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000578655	ENST00000310998		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000578655	ENST00000535842		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000578655	ENST00000375921		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000578655	ENST00000375938		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000578655	ENST00000375934		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000578655	ENST00000375922		TCGA	LD	BRCA	TCGA-D8-A1JM-01A	GAS7	chr17	9923094	-	TTLL9	chr20	30497540	+
5UTR-3CDS	ENST00000289081	ENST00000376238		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
5UTR-3CDS	ENST00000289081	ENST00000537648		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
5UTR-intron	ENST00000289081	ENST00000495823		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
intron-3CDS	ENST00000375305	ENST00000376238		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
intron-3CDS	ENST00000375305	ENST00000537648		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
intron-intron	ENST00000375305	ENST00000495823		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
intron-3CDS	ENST00000464653	ENST00000376238		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
intron-3CDS	ENST00000464653	ENST00000537648		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
intron-intron	ENST00000464653	ENST00000495823		TCGA	LD	BRCA	TCGA-D8-A1JP-01A	FANCC	chr9	98079808	-	SLC28A3	chr9	86903093	-
5CDS-5UTR	ENST00000405454	ENST00000370203		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FAM102B	chr1	109103187	+	TMEM56	chr1	95609447	+
5CDS-3UTR	ENST00000405454	ENST00000463375		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FAM102B	chr1	109103187	+	TMEM56	chr1	95609447	+
5CDS-5UTR	ENST00000370035	ENST00000370203		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FAM102B	chr1	109103187	+	TMEM56	chr1	95609447	+
5CDS-3UTR	ENST00000370035	ENST00000463375		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FAM102B	chr1	109103187	+	TMEM56	chr1	95609447	+
5CDS-intron	ENST00000370256	ENST00000315585		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000266880		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000443047		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000450056		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000537522		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000541837		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000432561		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370256	ENST00000541341		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000315585		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000266880		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000443047		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000450056		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000537522		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000541837		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000432561		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000260506	ENST00000541341		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000315585		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000266880		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000443047		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000450056		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000537522		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000541837		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000432561		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000271234	ENST00000541341		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000315585		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000266880		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000443047		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000450056		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000537522		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000541837		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000432561		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000604705	ENST00000541341		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000315585		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000266880		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000443047		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000450056		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000537522		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000541837		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000432561		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-intron	ENST00000370253	ENST00000541341		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	CHFR	chr12	133522383	-
5CDS-5UTR	ENST00000370256	ENST00000360187		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000370256	ENST00000392321		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000370256	ENST00000331711		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000260506	ENST00000360187		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000260506	ENST00000392321		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000260506	ENST00000331711		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000271234	ENST00000360187		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000271234	ENST00000392321		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000271234	ENST00000331711		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000604705	ENST00000360187		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000604705	ENST00000392321		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000604705	ENST00000331711		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000370253	ENST00000360187		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000370253	ENST00000392321		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
5CDS-5UTR	ENST00000370253	ENST00000331711		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	FNBP1L	chr1	93913862	+	ZNF605	chr12	133522383	-
In-frame	ENST00000264451	ENST00000381782		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	SLC30A9	chr4	41992777	+	NSUN7	chr4	40792619	+
In-frame	ENST00000264451	ENST00000316607		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	SLC30A9	chr4	41992777	+	NSUN7	chr4	40792619	+
5CDS-intron	ENST00000264451	ENST00000463952		TCGA	LD	BRCA	TCGA-D8-A1X5-01A	SLC30A9	chr4	41992777	+	NSUN7	chr4	40792619	+
5CDS-intron	ENST00000289968	ENST00000519416		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000520615		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000289968	ENST00000443286		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000289968	ENST00000520340		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000289968	ENST00000518415		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000522752		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000348567		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000330691		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000317827		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000379931		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000276520		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000520973		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000289968	ENST00000520611		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000519416		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000520615		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-5UTR	ENST00000441763	ENST00000443286		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-5UTR	ENST00000441763	ENST00000520340		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-5UTR	ENST00000441763	ENST00000518415		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000522752		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000348567		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000330691		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000317827		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000379931		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000276520		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000520973		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
3UTR-intron	ENST00000441763	ENST00000520611		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000519416		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000520615		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000303665	ENST00000443286		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000303665	ENST00000520340		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000303665	ENST00000518415		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000522752		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000348567		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000330691		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000317827		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000379931		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000276520		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000520973		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-intron	ENST00000303665	ENST00000520611		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000519416		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000520615		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000575975	ENST00000443286		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000575975	ENST00000520340		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-5UTR	ENST00000575975	ENST00000518415		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000522752		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000348567		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000330691		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000317827		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000379931		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000276520		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000520973		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
intron-intron	ENST00000575975	ENST00000520611		TCGA	LD	BRCA	TCGA-D8-A1X6-01A	ARHGAP17	chr16	24953308	-	TACC1	chr8	38599869	+
5CDS-5UTR	ENST00000420843	ENST00000526239		TCGA	LD	BRCA	TCGA-D8-A1X8-01A	ARRB1	chr11	74992119	-	KRTAP5-11	chr11	71293203	-
5CDS-3UTR	ENST00000420843	ENST00000398530		TCGA	LD	BRCA	TCGA-D8-A1X8-01A	ARRB1	chr11	74992119	-	KRTAP5-11	chr11	71293203	-
5CDS-5UTR	ENST00000393505	ENST00000526239		TCGA	LD	BRCA	TCGA-D8-A1X8-01A	ARRB1	chr11	74992119	-	KRTAP5-11	chr11	71293203	-
5CDS-3UTR	ENST00000393505	ENST00000398530		TCGA	LD	BRCA	TCGA-D8-A1X8-01A	ARRB1	chr11	74992119	-	KRTAP5-11	chr11	71293203	-
5CDS-5UTR	ENST00000360025	ENST00000526239		TCGA	LD	BRCA	TCGA-D8-A1X8-01A	ARRB1	chr11	74992119	-	KRTAP5-11	chr11	71293203	-
5CDS-3UTR	ENST00000360025	ENST00000398530		TCGA	LD	BRCA	TCGA-D8-A1X8-01A	ARRB1	chr11	74992119	-	KRTAP5-11	chr11	71293203	-
intron-3CDS	ENST00000460436	ENST00000260746		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	AIFM1	chrX	129293944	-	ARL3	chr10	104465136	-
intron-3CDS	ENST00000440263	ENST00000260746		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	AIFM1	chrX	129293944	-	ARL3	chr10	104465136	-
intron-3CDS	ENST00000535724	ENST00000260746		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	AIFM1	chrX	129293944	-	ARL3	chr10	104465136	-
intron-3CDS	ENST00000346424	ENST00000260746		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	AIFM1	chrX	129293944	-	ARL3	chr10	104465136	-
intron-3CDS	ENST00000319908	ENST00000260746		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	AIFM1	chrX	129293944	-	ARL3	chr10	104465136	-
intron-3CDS	ENST00000287295	ENST00000260746		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	AIFM1	chrX	129293944	-	ARL3	chr10	104465136	-
Frame-shit	ENST00000436063	ENST00000370238		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	DNTTIP2	chr1	94341824	-	GCLM	chr1	94367225	-
5CDS-5UTR	ENST00000436063	ENST00000467772		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	DNTTIP2	chr1	94341824	-	GCLM	chr1	94367225	-
5UTR-3CDS	ENST00000460191	ENST00000370238		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	DNTTIP2	chr1	94341824	-	GCLM	chr1	94367225	-
5UTR-5UTR	ENST00000460191	ENST00000467772		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	DNTTIP2	chr1	94341824	-	GCLM	chr1	94367225	-
5CDS-5UTR	ENST00000360003	ENST00000564528		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000360003	ENST00000393539		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000360003	ENST00000497160		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000360003	ENST00000357254		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000360003	ENST00000417828		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000360003	ENST00000428724		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000360003	ENST00000358700		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-intron	ENST00000360003	ENST00000539742		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000564528		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000393539		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000497160		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000357254		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000417828		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000428724		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-5UTR	ENST00000369077	ENST00000358700		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5CDS-intron	ENST00000369077	ENST00000539742		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000564528		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000393539		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000497160		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000357254		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000417828		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000428724		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-5UTR	ENST00000466047	ENST00000358700		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
5UTR-intron	ENST00000466047	ENST00000539742		TCGA	LD	BRCA	TCGA-D8-A1X9-01A	MCMBP	chr10	121602760	-	ZNF23	chr16	71487253	-
Frame-shit	ENST00000374263	ENST00000374279		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
5CDS-3UTR	ENST00000374263	ENST00000495085		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
Frame-shit	ENST00000374270	ENST00000374279		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
5CDS-3UTR	ENST00000374270	ENST00000495085		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
Frame-shit	ENST00000374264	ENST00000374279		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
5CDS-3UTR	ENST00000374264	ENST00000495085		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
intron-3CDS	ENST00000482851	ENST00000374279		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
intron-3UTR	ENST00000482851	ENST00000495085		TCGA	LD	BRCA	TCGA-D8-A1XA-01A	SUSD1	chr9	114840818	-	UGCG	chr9	114676885	+
5UTR-3CDS	ENST00000396029	ENST00000594295		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
5UTR-5UTR	ENST00000396029	ENST00000426391		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
5UTR-5UTR	ENST00000396029	ENST00000389534		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
5UTR-intron	ENST00000396029	ENST00000359973		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-3CDS	ENST00000396032	ENST00000594295		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-5UTR	ENST00000396032	ENST00000426391		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-5UTR	ENST00000396032	ENST00000389534		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-intron	ENST00000396032	ENST00000359973		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-3CDS	ENST00000371602	ENST00000594295		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-5UTR	ENST00000371602	ENST00000426391		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-5UTR	ENST00000371602	ENST00000389534		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-intron	ENST00000371602	ENST00000359973		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-3CDS	ENST00000349014	ENST00000594295		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-5UTR	ENST00000349014	ENST00000426391		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-5UTR	ENST00000349014	ENST00000389534		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
intron-intron	ENST00000349014	ENST00000359973		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ADNP	chr20	49545188	-	ZNF841	chr19	52570863	-
5CDS-intron	ENST00000373233	ENST00000589799		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
5CDS-intron	ENST00000373233	ENST00000589248		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
5CDS-intron	ENST00000373233	ENST00000291182		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
5CDS-intron	ENST00000309279	ENST00000589799		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
5CDS-intron	ENST00000309279	ENST00000589248		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
5CDS-intron	ENST00000309279	ENST00000291182		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
intron-intron	ENST00000373222	ENST00000589799		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
intron-intron	ENST00000373222	ENST00000589248		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
intron-intron	ENST00000373222	ENST00000291182		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
intron-intron	ENST00000480022	ENST00000589799		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
intron-intron	ENST00000480022	ENST00000589248		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
intron-intron	ENST00000480022	ENST00000291182		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	CHD6	chr20	40080466	-	ZNF235	chr19	44739022	-
5CDS-5UTR	ENST00000298049	ENST00000594268		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	EEF1A2	chr20	62121832	-	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000298049	ENST00000221498		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	EEF1A2	chr20	62121832	-	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000217182	ENST00000594268		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	EEF1A2	chr20	62121832	-	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000217182	ENST00000221498		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	EEF1A2	chr20	62121832	-	DKKL1	chr19	49877974	+
In-frame	ENST00000288985	ENST00000361255		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000449912		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000451710		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000376872		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000360774		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000376871		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000376864		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
In-frame	ENST00000288985	ENST00000359047		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
5CDS-intron	ENST00000288985	ENST00000483186		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000361255		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000449912		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000451710		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000376872		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000360774		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000376871		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000376864		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-3CDS	ENST00000466840	ENST00000359047		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
3UTR-intron	ENST00000466840	ENST00000483186		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000361255		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000449912		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000451710		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000376872		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000360774		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000376871		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000376864		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000437817	ENST00000359047		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-intron	ENST00000437817	ENST00000483186		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000361255		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000449912		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000451710		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000376872		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000360774		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000376871		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000376864		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-3CDS	ENST00000407474	ENST00000359047		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
intron-intron	ENST00000407474	ENST00000483186		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ERCC6L2	chr9	98660253	+	TRPM6	chr9	77473664	-
5CDS-5UTR	ENST00000379540	ENST00000600228		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379540	ENST00000330123		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379540	ENST00000596290		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379540	ENST00000597013		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379521	ENST00000600228		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379521	ENST00000330123		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379521	ENST00000596290		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000379521	ENST00000597013		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000318524	ENST00000600228		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000318524	ENST00000330123		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000318524	ENST00000596290		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
5CDS-5UTR	ENST00000318524	ENST00000597013		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
intron-5UTR	ENST00000463421	ENST00000600228		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
intron-5UTR	ENST00000463421	ENST00000330123		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
intron-5UTR	ENST00000463421	ENST00000596290		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
intron-5UTR	ENST00000463421	ENST00000597013		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NFX1	chr9	33290595	+	ZNF616	chr19	52633841	-
Frame-shit	ENST00000376214	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
5CDS-intron	ENST00000376214	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
Frame-shit	ENST00000376213	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
5CDS-intron	ENST00000376213	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-3CDS	ENST00000395882	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-intron	ENST00000395882	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-3CDS	ENST00000304053	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-intron	ENST00000304053	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-3CDS	ENST00000376208	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-intron	ENST00000376208	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
Frame-shit	ENST00000277120	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
5CDS-intron	ENST00000277120	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
Frame-shit	ENST00000323115	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
5CDS-intron	ENST00000323115	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-3CDS	ENST00000359847	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-intron	ENST00000359847	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-3CDS	ENST00000395866	ENST00000376447		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
intron-intron	ENST00000395866	ENST00000340717		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	NTRK2	chr9	87570432	+	RASEF	chr9	85597697	-
In-frame	ENST00000371610	ENST00000535781		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	PARD6B	chr20	49348389	+	PRPF6	chr20	62630398	+
In-frame	ENST00000396039	ENST00000535781		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	PARD6B	chr20	49348389	+	PRPF6	chr20	62630398	+
5UTR-3CDS	ENST00000375114	ENST00000374837		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-3CDS	ENST00000375114	ENST00000360668		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-3CDS	ENST00000375114	ENST00000397709		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-intron	ENST00000375114	ENST00000476428		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-3CDS	ENST00000246194	ENST00000374837		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-3CDS	ENST00000246194	ENST00000360668		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-3CDS	ENST00000246194	ENST00000397709		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
5UTR-intron	ENST00000246194	ENST00000476428		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
intron-3CDS	ENST00000493399	ENST00000374837		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
intron-3CDS	ENST00000493399	ENST00000360668		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
intron-3CDS	ENST00000493399	ENST00000397709		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
intron-intron	ENST00000493399	ENST00000476428		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	RALY	chr20	32581937	+	MAP1LC3A	chr20	33147012	+
intron-3CDS	ENST00000424834	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000424834	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000424834	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000424834	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000424834	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000424834	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000424834	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000424834	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382108	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382108	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382108	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382108	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382108	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382108	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382108	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382108	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382095	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382095	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382095	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-3CDS	ENST00000382095	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382095	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382095	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382095	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
5UTR-intron	ENST00000382095	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000474317	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000474317	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000474317	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000474317	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000474317	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000474317	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000474317	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000474317	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000399949	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000399949	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000399949	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000399949	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000399949	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000399949	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000399949	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000399949	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000409126	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000409126	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000409126	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000409126	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000409126	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000409126	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000409126	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000409126	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000343003	ENST00000520810		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000343003	ENST00000416505		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000343003	ENST00000519735		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-3CDS	ENST00000343003	ENST00000520835		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000343003	ENST00000379708		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000343003	ENST00000518983		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000343003	ENST00000522147		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
intron-intron	ENST00000343003	ENST00000522785		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	SPATA13	chr13	24735071	+	IKBKB	chr8	42162705	+
In-frame	ENST00000557021	ENST00000376959		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000557021	ENST00000391818		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000557021	ENST00000474951		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000557021	ENST00000477616		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
In-frame	ENST00000371650	ENST00000376959		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000371650	ENST00000391818		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000371650	ENST00000474951		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000371650	ENST00000477616		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
In-frame	ENST00000371652	ENST00000376959		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000371652	ENST00000391818		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000371652	ENST00000474951		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5CDS-intron	ENST00000371652	ENST00000477616		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
intron-3CDS	ENST00000371656	ENST00000376959		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
intron-intron	ENST00000371656	ENST00000391818		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
intron-intron	ENST00000371656	ENST00000474951		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
intron-intron	ENST00000371656	ENST00000477616		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	TMEM189	chr20	48770054	-	KCNC3	chr19	50827339	-
5UTR-3CDS	ENST00000338230	ENST00000379540		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
5UTR-3CDS	ENST00000338230	ENST00000379521		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
5UTR-3CDS	ENST00000338230	ENST00000318524		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
5UTR-intron	ENST00000338230	ENST00000463421		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
intron-3CDS	ENST00000598369	ENST00000379540		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
intron-3CDS	ENST00000598369	ENST00000379521		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
intron-3CDS	ENST00000598369	ENST00000318524		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
intron-intron	ENST00000598369	ENST00000463421		TCGA	LD	BRCA	TCGA-D8-A1XD-01A	ZNF600	chr19	53282079	-	NFX1	chr9	33301261	+
Frame-shit	ENST00000375441	ENST00000375370		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375441	ENST00000538138		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000375441	ENST00000465174		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375441	ENST00000544902		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
Frame-shit	ENST00000451881	ENST00000375370		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000451881	ENST00000538138		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000451881	ENST00000465174		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000451881	ENST00000544902		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
Frame-shit	ENST00000326335	ENST00000375370		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000326335	ENST00000538138		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000326335	ENST00000465174		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000326335	ENST00000544902		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
Frame-shit	ENST00000375440	ENST00000375370		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375440	ENST00000538138		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000375440	ENST00000465174		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375440	ENST00000544902		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
intron-3CDS	ENST00000463426	ENST00000375370		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000463426	ENST00000538138		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
intron-3UTR	ENST00000463426	ENST00000465174		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000463426	ENST00000544902		TCGA	LD	BRCA	TCGA-D8-A1XF-01A	CUL4A	chr13	113898828	+	TFDP1	chr13	114265311	+
Frame-shit	ENST00000368407	ENST00000491148		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
Frame-shit	ENST00000368407	ENST00000282957		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
5CDS-intron	ENST00000368407	ENST00000498639		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
Frame-shit	ENST00000368406	ENST00000491148		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
Frame-shit	ENST00000368406	ENST00000282957		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
5CDS-intron	ENST00000368406	ENST00000498639		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
3UTR-3CDS	ENST00000469878	ENST00000491148		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
3UTR-3CDS	ENST00000469878	ENST00000282957		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
3UTR-intron	ENST00000469878	ENST00000498639		TCGA	LD	BRCA	TCGA-D8-A1XG-01A	EFNA1	chr1	155106250	+	CPB1	chr3	148552296	+
In-frame	ENST00000353139	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000353139	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000353139	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000353139	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5CDS-intron	ENST00000353139	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000353139	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000360679	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000360679	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000360679	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000360679	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-intron	ENST00000360679	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000360679	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000394406	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000394406	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000394406	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000394406	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-intron	ENST00000394406	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000394406	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000335166	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000335166	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000335166	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000335166	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-intron	ENST00000335166	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000335166	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-3CDS	ENST00000416895	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000416895	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000416895	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000416895	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-intron	ENST00000416895	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000416895	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000361253	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000361253	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000361253	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000361253	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-intron	ENST00000361253	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000361253	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000588142	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000588142	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000588142	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000588142	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-intron	ENST00000588142	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000588142	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-3CDS	ENST00000589665	ENST00000394126		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000589665	ENST00000356271		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000589665	ENST00000394128		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000589665	ENST00000394127		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-intron	ENST00000589665	ENST00000501516		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000589665	ENST00000479829		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACACA	chr17	35766352	-	MED24	chr17	38209888	-
Frame-shit	ENST00000323482	ENST00000359926		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000323482	ENST00000371015		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000323482	ENST00000395639		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000323482	ENST00000541461		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000323482	ENST00000355648		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000323482	ENST00000395636		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000323482	ENST00000361300		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000432802	ENST00000359926		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000432802	ENST00000371015		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000432802	ENST00000395639		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000432802	ENST00000541461		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000432802	ENST00000355648		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000432802	ENST00000395636		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000432802	ENST00000361300		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000376726	ENST00000359926		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
Frame-shit	ENST00000376726	ENST00000371015		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000376726	ENST00000395639		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000376726	ENST00000541461		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000376726	ENST00000355648		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000376726	ENST00000395636		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
5CDS-5UTR	ENST00000376726	ENST00000361300		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-3CDS	ENST00000484396	ENST00000359926		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-3CDS	ENST00000484396	ENST00000371015		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000484396	ENST00000395639		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000484396	ENST00000541461		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000484396	ENST00000355648		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000484396	ENST00000395636		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000484396	ENST00000361300		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-3CDS	ENST00000537502	ENST00000359926		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-3CDS	ENST00000537502	ENST00000371015		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000537502	ENST00000395639		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000537502	ENST00000541461		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000537502	ENST00000355648		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000537502	ENST00000395636		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000537502	ENST00000361300		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-3CDS	ENST00000542618	ENST00000359926		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-3CDS	ENST00000542618	ENST00000371015		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000542618	ENST00000395639		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000542618	ENST00000541461		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000542618	ENST00000355648		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000542618	ENST00000395636		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-5UTR	ENST00000542618	ENST00000361300		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ACSS1	chr20	25038405	-	PHACTR3	chr20	58318162	+
intron-intron	ENST00000398575	ENST00000430627		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	C17orf98	chr17	36991466	-	CDK12	chr17	37721013	+
intron-intron	ENST00000398575	ENST00000447079		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	C17orf98	chr17	36991466	-	CDK12	chr17	37721013	+
intron-3UTR	ENST00000398575	ENST00000559545		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	C17orf98	chr17	36991466	-	CDK12	chr17	37721013	+
5CDS-intron	ENST00000394303	ENST00000584601		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000406381		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000541774		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000445658		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000540147		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000584450		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000269571		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000578199		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394303	ENST00000540042		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-3UTR	ENST00000394303	ENST00000584888		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000584601		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000406381		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000541774		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000445658		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000540147		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000584450		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000269571		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000578199		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000394310	ENST00000540042		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-3UTR	ENST00000394310	ENST00000584888		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000584601		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000406381		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000541774		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000445658		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000540147		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000584450		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000269571		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000578199		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-intron	ENST00000344140	ENST00000540042		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
5CDS-3UTR	ENST00000344140	ENST00000584888		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000584601		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000406381		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000541774		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000445658		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000540147		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000584450		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000269571		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000578199		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-intron	ENST00000582877	ENST00000540042		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
intron-3UTR	ENST00000582877	ENST00000584888		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	CACNB1	chr17	37334237	-	ERBB2	chr17	37886276	+
Frame-shit	ENST00000584601	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000584601	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000406381	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000406381	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000541774	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000541774	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000445658	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000445658	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000540147	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000540147	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000584450	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000584450	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000269571	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000269571	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000578199	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
Frame-shit	ENST00000578199	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
In-frame	ENST00000540042	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
In-frame	ENST00000540042	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
intron-3CDS	ENST00000584888	ENST00000394287		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
intron-3CDS	ENST00000584888	ENST00000300651		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	ERBB2	chr17	37873733	+	MED1	chr17	37571592	-
5CDS-intron	ENST00000583610	ENST00000269586		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000583610	ENST00000444555		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000583610	ENST00000583123		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-intron	ENST00000394294	ENST00000269586		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000394294	ENST00000444555		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000394294	ENST00000583123		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-intron	ENST00000264658	ENST00000269586		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000264658	ENST00000444555		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000264658	ENST00000583123		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-intron	ENST00000577399	ENST00000269586		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000577399	ENST00000444555		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
5CDS-5UTR	ENST00000577399	ENST00000583123		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37431223	-	ARL5C	chr17	37322870	-
In-frame	ENST00000583610	ENST00000394332		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000583610	ENST00000394333		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000583610	ENST00000479035		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000583610	ENST00000245857		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000583610	ENST00000577407		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
In-frame	ENST00000394294	ENST00000394332		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000394294	ENST00000394333		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000394294	ENST00000479035		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000394294	ENST00000245857		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000394294	ENST00000577407		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
In-frame	ENST00000264658	ENST00000394332		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000264658	ENST00000394333		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000264658	ENST00000479035		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000264658	ENST00000245857		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
5CDS-5UTR	ENST00000264658	ENST00000577407		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
intron-3CDS	ENST00000577399	ENST00000394332		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
intron-3CDS	ENST00000577399	ENST00000394333		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
intron-3CDS	ENST00000577399	ENST00000479035		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
intron-5UTR	ENST00000577399	ENST00000245857		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
intron-5UTR	ENST00000577399	ENST00000577407		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	FBXL20	chr17	37557614	-	RPL23	chr17	37009358	-
Frame-shit	ENST00000325722	ENST00000431992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
In-frame	ENST00000325722	ENST00000373422		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
Frame-shit	ENST00000325722	ENST00000257118		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
Frame-shit	ENST00000325722	ENST00000419414		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5CDS-intron	ENST00000325722	ENST00000373416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5CDS-5UTR	ENST00000325722	ENST00000485928		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5CDS-5UTR	ENST00000325722	ENST00000373418		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
Frame-shit	ENST00000373266	ENST00000431992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
In-frame	ENST00000373266	ENST00000373422		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
Frame-shit	ENST00000373266	ENST00000257118		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
Frame-shit	ENST00000373266	ENST00000419414		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5CDS-intron	ENST00000373266	ENST00000373416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5CDS-5UTR	ENST00000373266	ENST00000485928		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5CDS-5UTR	ENST00000373266	ENST00000373418		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-3CDS	ENST00000485551	ENST00000431992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-3CDS	ENST00000485551	ENST00000373422		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-3CDS	ENST00000485551	ENST00000257118		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-3CDS	ENST00000485551	ENST00000419414		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-intron	ENST00000485551	ENST00000373416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-5UTR	ENST00000485551	ENST00000485928		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
5UTR-5UTR	ENST00000485551	ENST00000373418		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	KIAA0319L	chr1	35907847	-	PHC2	chr1	33790620	-
In-frame	ENST00000394287	ENST00000269554		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	MED1	chr17	37607291	-	PIP4K2B	chr17	36943173	-
5CDS-5UTR	ENST00000394287	ENST00000311500		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	MED1	chr17	37607291	-	PIP4K2B	chr17	36943173	-
In-frame	ENST00000300651	ENST00000269554		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	MED1	chr17	37607291	-	PIP4K2B	chr17	36943173	-
5CDS-5UTR	ENST00000300651	ENST00000311500		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	MED1	chr17	37607291	-	PIP4K2B	chr17	36943173	-
In-frame	ENST00000269554	ENST00000583610		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
In-frame	ENST00000269554	ENST00000394294		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
In-frame	ENST00000269554	ENST00000264658		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
In-frame	ENST00000269554	ENST00000577399		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000311500	ENST00000583610		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000311500	ENST00000394294		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000311500	ENST00000264658		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000311500	ENST00000577399		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	PIP4K2B	chr17	36955519	-	FBXL20	chr17	37499494	-
In-frame	ENST00000336308	ENST00000398575		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STARD3	chr17	37810003	+	C17orf98	chr17	36991599	-
3UTR-3CDS	ENST00000578232	ENST00000398575		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STARD3	chr17	37810003	+	C17orf98	chr17	36991599	-
In-frame	ENST00000544210	ENST00000398575		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STARD3	chr17	37810003	+	C17orf98	chr17	36991599	-
In-frame	ENST00000394250	ENST00000398575		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STARD3	chr17	37810003	+	C17orf98	chr17	36991599	-
In-frame	ENST00000580611	ENST00000398575		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STARD3	chr17	37810003	+	C17orf98	chr17	36991599	-
Frame-shit	ENST00000397517	ENST00000376460		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
Frame-shit	ENST00000397517	ENST00000339416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000397517	ENST00000448493		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000397517	ENST00000442173		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000397517	ENST00000461998		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
Frame-shit	ENST00000539966	ENST00000376460		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
Frame-shit	ENST00000539966	ENST00000339416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000539966	ENST00000448493		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000539966	ENST00000442173		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000539966	ENST00000461998		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5UTR-3CDS	ENST00000481288	ENST00000376460		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5UTR-3CDS	ENST00000481288	ENST00000339416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5UTR-intron	ENST00000481288	ENST00000448493		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5UTR-intron	ENST00000481288	ENST00000442173		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5UTR-intron	ENST00000481288	ENST00000461998		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
Frame-shit	ENST00000376547	ENST00000376460		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
Frame-shit	ENST00000376547	ENST00000339416		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000376547	ENST00000448493		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000376547	ENST00000442173		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-intron	ENST00000376547	ENST00000461998		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	STK24	chr13	99171497	-	DOCK9	chr13	99452732	-
5CDS-5UTR	ENST00000394395	ENST00000336308		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000394395	ENST00000578232		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000394395	ENST00000544210		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000394395	ENST00000394250		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000394395	ENST00000580611		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000586023	ENST00000336308		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000586023	ENST00000578232		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000586023	ENST00000544210		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000586023	ENST00000394250		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000586023	ENST00000580611		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225396	ENST00000336308		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000225396	ENST00000578232		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225396	ENST00000544210		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225396	ENST00000394250		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000225396	ENST00000580611		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000417170	ENST00000336308		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000417170	ENST00000578232		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000417170	ENST00000544210		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000417170	ENST00000394250		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000417170	ENST00000580611		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000591992	ENST00000336308		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
intron-intron	ENST00000591992	ENST00000578232		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000591992	ENST00000544210		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000591992	ENST00000394250		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000591992	ENST00000580611		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	TADA2A	chr17	35771477	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000394121	ENST00000394395		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000394121	ENST00000586023		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000394121	ENST00000225396		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000394121	ENST00000417170		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-intron	ENST00000394121	ENST00000591992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000264637	ENST00000394395		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000264637	ENST00000586023		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000264637	ENST00000225396		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000264637	ENST00000417170		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000264637	ENST00000591992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000584985	ENST00000394395		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000584985	ENST00000586023		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000584985	ENST00000225396		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000584985	ENST00000417170		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000584985	ENST00000591992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000450525	ENST00000394395		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000450525	ENST00000586023		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000450525	ENST00000225396		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000450525	ENST00000417170		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000450525	ENST00000591992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000546243	ENST00000394395		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000546243	ENST00000586023		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000546243	ENST00000225396		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000546243	ENST00000417170		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
intron-intron	ENST00000546243	ENST00000591992		TCGA	LD	BRCA	TCGA-D8-A1XJ-01A	THRA	chr17	38219345	+	TADA2A	chr17	35771356	+
In-frame	ENST00000237853	ENST00000358746		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ELL2	chr5	95255128	-	TTC37	chr5	94834295	-
5CDS-intron	ENST00000237853	ENST00000515176		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ELL2	chr5	95255128	-	TTC37	chr5	94834295	-
In-frame	ENST00000431061	ENST00000358746		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ELL2	chr5	95255128	-	TTC37	chr5	94834295	-
5CDS-intron	ENST00000431061	ENST00000515176		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ELL2	chr5	95255128	-	TTC37	chr5	94834295	-
intron-3CDS	ENST00000506628	ENST00000358746		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ELL2	chr5	95255128	-	TTC37	chr5	94834295	-
intron-intron	ENST00000506628	ENST00000515176		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ELL2	chr5	95255128	-	TTC37	chr5	94834295	-
intron-5UTR	ENST00000338086	ENST00000544564		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000338086	ENST00000541571		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000338086	ENST00000535424		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000338086	ENST00000378799		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000338086	ENST00000538565		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000338086	ENST00000606369		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000338086	ENST00000329908		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000338086	ENST00000538850		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000338086	ENST00000378798		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000319801	ENST00000544564		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000319801	ENST00000541571		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000319801	ENST00000535424		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000319801	ENST00000378799		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000319801	ENST00000538565		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000319801	ENST00000606369		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000319801	ENST00000329908		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000319801	ENST00000538850		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000319801	ENST00000378798		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000361078	ENST00000544564		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000361078	ENST00000541571		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000361078	ENST00000535424		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000361078	ENST00000378799		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000361078	ENST00000538565		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000361078	ENST00000606369		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000361078	ENST00000329908		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000361078	ENST00000538850		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000361078	ENST00000378798		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000536417	ENST00000544564		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000536417	ENST00000541571		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000536417	ENST00000535424		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000536417	ENST00000378799		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-intron	ENST00000536417	ENST00000538565		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-intron	ENST00000536417	ENST00000606369		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000536417	ENST00000329908		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-intron	ENST00000536417	ENST00000538850		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000536417	ENST00000378798		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000403432	ENST00000544564		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000403432	ENST00000541571		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000403432	ENST00000535424		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000403432	ENST00000378799		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-intron	ENST00000403432	ENST00000538565		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-intron	ENST00000403432	ENST00000606369		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000403432	ENST00000329908		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-intron	ENST00000403432	ENST00000538850		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5UTR-5UTR	ENST00000403432	ENST00000378798		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000420234	ENST00000544564		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000420234	ENST00000541571		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000420234	ENST00000535424		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000420234	ENST00000378799		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000420234	ENST00000538565		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000420234	ENST00000606369		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000420234	ENST00000329908		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-intron	ENST00000420234	ENST00000538850		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
intron-5UTR	ENST00000420234	ENST00000378798		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	PUM2	chr2	20550358	-	IST1	chr16	71949529	+
5CDS-3UTR	ENST00000284273	ENST00000532352		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	UBASH3B	chr11	122526918	+	FOLH1B	chr11	89413777	+
3UTR-3UTR	ENST00000525711	ENST00000532352		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	UBASH3B	chr11	122526918	+	FOLH1B	chr11	89413777	+
Frame-shit	ENST00000377674	ENST00000333172		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ZBTB48	chr1	6649110	+	TAS1R1	chr1	6637010	+
5CDS-intron	ENST00000377674	ENST00000328191		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ZBTB48	chr1	6649110	+	TAS1R1	chr1	6637010	+
5CDS-intron	ENST00000377674	ENST00000351136		TCGA	LD	BRCA	TCGA-D8-A1XK-01A	ZBTB48	chr1	6649110	+	TAS1R1	chr1	6637010	+
In-frame	ENST00000262134	ENST00000429344		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	LPCAT2	chr16	55571544	+	CACTIN	chr19	3620270	-
In-frame	ENST00000262134	ENST00000248420		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	LPCAT2	chr16	55571544	+	CACTIN	chr19	3620270	-
In-frame	ENST00000262134	ENST00000221899		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	LPCAT2	chr16	55571544	+	CACTIN	chr19	3620270	-
intron-3CDS	ENST00000565056	ENST00000429344		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	LPCAT2	chr16	55571544	+	CACTIN	chr19	3620270	-
intron-3CDS	ENST00000565056	ENST00000248420		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	LPCAT2	chr16	55571544	+	CACTIN	chr19	3620270	-
intron-3CDS	ENST00000565056	ENST00000221899		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	LPCAT2	chr16	55571544	+	CACTIN	chr19	3620270	-
5CDS-5UTR	ENST00000300896	ENST00000354760		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
5CDS-3UTR	ENST00000300896	ENST00000466315		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
intron-5UTR	ENST00000592339	ENST00000354760		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
intron-3UTR	ENST00000592339	ENST00000466315		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
5CDS-5UTR	ENST00000393003	ENST00000354760		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
5CDS-3UTR	ENST00000393003	ENST00000466315		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
intron-5UTR	ENST00000586881	ENST00000354760		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
intron-3UTR	ENST00000586881	ENST00000466315		TCGA	LD	BRCA	TCGA-D8-A1XL-01A	USP32	chr17	58372044	-	CRYBA4	chr22	27018549	+
5CDS-5UTR	ENST00000543385	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000543385	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-intron	ENST00000543385	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000543385	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000336727	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000336727	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-intron	ENST00000336727	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000336727	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000344733	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000344733	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-intron	ENST00000344733	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000344733	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000382788	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000382788	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-intron	ENST00000382788	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000382788	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000306648	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000306648	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-intron	ENST00000306648	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
5CDS-5UTR	ENST00000306648	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000338806	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000338806	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-intron	ENST00000338806	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000338806	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000508158	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000508158	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-intron	ENST00000508158	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000508158	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000538395	ENST00000284240		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000538395	ENST00000528522		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-intron	ENST00000538395	ENST00000527590		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
intron-5UTR	ENST00000538395	ENST00000580275		TCGA	LD	BRCA	TCGA-D8-A1XO-01A	RGS12	chr4	3344780	+	THY1	chr11	119291639	-
Frame-shit	ENST00000311637	ENST00000217086		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
In-frame	ENST00000311637	ENST00000371539		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
Frame-shit	ENST00000311637	ENST00000395997		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
5CDS-intron	ENST00000311637	ENST00000483130		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
Frame-shit	ENST00000338821	ENST00000217086		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
In-frame	ENST00000338821	ENST00000371539		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
Frame-shit	ENST00000338821	ENST00000395997		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
5CDS-intron	ENST00000338821	ENST00000483130		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
Frame-shit	ENST00000402822	ENST00000217086		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
In-frame	ENST00000402822	ENST00000371539		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
Frame-shit	ENST00000402822	ENST00000395997		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
5CDS-intron	ENST00000402822	ENST00000483130		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
intron-3CDS	ENST00000477492	ENST00000217086		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
intron-3CDS	ENST00000477492	ENST00000371539		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
intron-3CDS	ENST00000477492	ENST00000395997		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
intron-intron	ENST00000477492	ENST00000483130		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	ATP9A	chr20	50384841	-	SALL4	chr20	50401223	-
Frame-shit	ENST00000513661	ENST00000296721		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
5CDS-intron	ENST00000513661	ENST00000522492		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
5CDS-intron	ENST00000513661	ENST00000515000		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
Frame-shit	ENST00000329271	ENST00000296721		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
5CDS-intron	ENST00000329271	ENST00000522492		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
5CDS-intron	ENST00000329271	ENST00000515000		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
Frame-shit	ENST00000416916	ENST00000296721		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
5CDS-intron	ENST00000416916	ENST00000522492		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
5CDS-intron	ENST00000416916	ENST00000515000		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
intron-3CDS	ENST00000507562	ENST00000296721		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
intron-intron	ENST00000507562	ENST00000522492		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
intron-intron	ENST00000507562	ENST00000515000		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	GRPEL2	chr5	148725179	+	AFAP1L1	chr5	148719570	+
Frame-shit	ENST00000447654	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000447654	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000447654	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000447654	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-3UTR	ENST00000447654	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-intron	ENST00000447654	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000401473	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000401473	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000401473	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000401473	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-3UTR	ENST00000401473	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-intron	ENST00000401473	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000311487	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000311487	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000311487	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000311487	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-3UTR	ENST00000311487	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-intron	ENST00000311487	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000347617	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000347617	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000347617	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000347617	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-3UTR	ENST00000347617	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-intron	ENST00000347617	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
intron-3CDS	ENST00000395004	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
intron-3CDS	ENST00000395004	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
intron-3CDS	ENST00000395004	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
intron-3CDS	ENST00000395004	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
intron-3UTR	ENST00000395004	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
intron-intron	ENST00000395004	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
3UTR-3CDS	ENST00000478214	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
3UTR-3CDS	ENST00000478214	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
3UTR-3CDS	ENST00000478214	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
3UTR-3CDS	ENST00000478214	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
3UTR-3UTR	ENST00000478214	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
3UTR-intron	ENST00000478214	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000374116	ENST00000361511		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000374116	ENST00000543630		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000374116	ENST00000359763		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000374116	ENST00000349874		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-3UTR	ENST00000374116	ENST00000471570		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
5CDS-intron	ENST00000374116	ENST00000544635		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	HMGA1	chr6	34211295	+	PPEF1	chrX	18748299	+
Frame-shit	ENST00000276585	ENST00000392723		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000361398		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000271715		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000368863		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000409503		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000531094		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000540984		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000276585	ENST00000491586		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
Frame-shit	ENST00000521434	ENST00000392723		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000361398		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000271715		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000368863		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000409503		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000531094		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000540984		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000521434	ENST00000491586		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-3CDS	ENST00000521605	ENST00000392723		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000361398		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000271715		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000368863		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000409503		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000531094		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000540984		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000521605	ENST00000491586		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-3CDS	ENST00000522987	ENST00000392723		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000361398		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000271715		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000368863		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000409503		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000531094		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000540984		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
5UTR-5UTR	ENST00000522987	ENST00000491586		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	MRPS28	chr8	80915234	-	POGZ	chr1	151414681	-
Frame-shit	ENST00000302907	ENST00000302937		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
In-frame	ENST00000302907	ENST00000429671		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000302907	ENST00000396383		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000302907	ENST00000396388		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391752	ENST00000302937		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
In-frame	ENST00000391752	ENST00000429671		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391752	ENST00000396383		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391752	ENST00000396388		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000402367	ENST00000302937		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
In-frame	ENST00000402367	ENST00000429671		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000402367	ENST00000396383		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000402367	ENST00000396388		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391751	ENST00000302937		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
In-frame	ENST00000391751	ENST00000429671		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391751	ENST00000396383		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391751	ENST00000396388		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391753	ENST00000302937		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
In-frame	ENST00000391753	ENST00000429671		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391753	ENST00000396383		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000391753	ENST00000396388		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000441429	ENST00000302937		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
In-frame	ENST00000441429	ENST00000429671		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000441429	ENST00000396383		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
Frame-shit	ENST00000441429	ENST00000396388		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	RPS9	chr19	54705477	+	TSEN34	chr19	54697030	+
intron-intron	ENST00000555245	ENST00000487861		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000555245	ENST00000471583		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000555245	ENST00000487270		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000555245	ENST00000488612		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000555245	ENST00000390683		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000555245	ENST00000469165		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000556605	ENST00000487861		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000556605	ENST00000471583		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000556605	ENST00000487270		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000556605	ENST00000488612		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000556605	ENST00000390683		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000556605	ENST00000469165		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000336643	ENST00000487861		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000336643	ENST00000471583		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000336643	ENST00000487270		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000336643	ENST00000488612		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000336643	ENST00000390683		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000336643	ENST00000469165		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000031146	ENST00000487861		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000031146	ENST00000471583		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000031146	ENST00000487270		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000031146	ENST00000488612		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000031146	ENST00000390683		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000031146	ENST00000469165		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000557046	ENST00000487861		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000557046	ENST00000471583		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000557046	ENST00000487270		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000557046	ENST00000488612		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000557046	ENST00000390683		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000557046	ENST00000469165		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SLC39A9	chr14	69866182	+	RAD51B	chr14	69149654	+
5CDS-5UTR	ENST00000374232	ENST00000374210		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SNX30	chr9	115513437	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000374232	ENST00000374212		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SNX30	chr9	115513437	+	SLC31A1	chr9	116018394	+
5CDS-intron	ENST00000374232	ENST00000496650		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SNX30	chr9	115513437	+	SLC31A1	chr9	116018394	+
intron-5UTR	ENST00000604751	ENST00000374210		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SNX30	chr9	115513437	+	SLC31A1	chr9	116018394	+
intron-5UTR	ENST00000604751	ENST00000374212		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SNX30	chr9	115513437	+	SLC31A1	chr9	116018394	+
intron-intron	ENST00000604751	ENST00000496650		TCGA	LD	BRCA	TCGA-D8-A1XQ-01A	SNX30	chr9	115513437	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000253925	ENST00000530069		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000253925	ENST00000349015		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000253925	ENST00000531881		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000389547	ENST00000530069		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000389547	ENST00000349015		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000389547	ENST00000531881		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
intron-5UTR	ENST00000530548	ENST00000530069		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
intron-5UTR	ENST00000530548	ENST00000349015		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
intron-5UTR	ENST00000530548	ENST00000531881		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PPFIA1	chr11	70118542	+	ALDH3B2	chr11	67435106	-
In-frame	ENST00000338368	ENST00000297423		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
In-frame	ENST00000338368	ENST00000518074		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
In-frame	ENST00000338368	ENST00000541342		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5CDS-3UTR	ENST00000338368	ENST00000521214		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000338368	ENST00000517693		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000338368	ENST00000518060		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
In-frame	ENST00000314191	ENST00000297423		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
In-frame	ENST00000314191	ENST00000518074		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
In-frame	ENST00000314191	ENST00000541342		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5CDS-3UTR	ENST00000314191	ENST00000521214		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000314191	ENST00000517693		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000314191	ENST00000518060		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000297423		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000518074		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000541342		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5UTR-3UTR	ENST00000523565	ENST00000521214		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5UTR-intron	ENST00000523565	ENST00000517693		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
5UTR-intron	ENST00000523565	ENST00000518060		TCGA	LD	BRCA	TCGA-D8-A1XS-01A	PRKDC	chr8	48706851	-	SPIDR	chr8	48508373	+
In-frame	ENST00000328194	ENST00000256190		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
5CDS-intron	ENST00000328194	ENST00000527019		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
In-frame	ENST00000530044	ENST00000256190		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
5CDS-intron	ENST00000530044	ENST00000527019		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
intron-3CDS	ENST00000527700	ENST00000256190		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
intron-intron	ENST00000527700	ENST00000527019		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
intron-3CDS	ENST00000526523	ENST00000256190		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
intron-intron	ENST00000526523	ENST00000527019		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	DENND5A	chr11	9215041	-	SBF2	chr11	9879943	-
Frame-shit	ENST00000426263	ENST00000361548		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000426263	ENST00000342072		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000426263	ENST00000350501		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000426263	ENST00000530984		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000426263	ENST00000356046		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000426263	ENST00000236255		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-3CDS	ENST00000475162	ENST00000361548		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000475162	ENST00000342072		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000475162	ENST00000350501		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-3UTR	ENST00000475162	ENST00000530984		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000475162	ENST00000356046		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000475162	ENST00000236255		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
Frame-shit	ENST00000415851	ENST00000361548		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000415851	ENST00000342072		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000415851	ENST00000350501		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000415851	ENST00000530984		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000415851	ENST00000356046		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000415851	ENST00000236255		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
Frame-shit	ENST00000372500	ENST00000361548		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000372500	ENST00000342072		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000372500	ENST00000350501		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000372500	ENST00000530984		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000372500	ENST00000356046		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000372500	ENST00000236255		TCGA	LD	BRCA	TCGA-D8-A1XT-01A	SLC2A1	chr1	43424305	-	GRHL3	chr1	24657916	+
intron-3CDS	ENST00000377122	ENST00000376980		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-intron	ENST00000377122	ENST00000376946		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000377122	ENST00000483085		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
In-frame	ENST00000417816	ENST00000376980		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
5CDS-intron	ENST00000417816	ENST00000376946		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
5CDS-5UTR	ENST00000417816	ENST00000483085		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
In-frame	ENST00000377159	ENST00000376980		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
5CDS-intron	ENST00000377159	ENST00000376946		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
5CDS-5UTR	ENST00000377159	ENST00000483085		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-3CDS	ENST00000377119	ENST00000376980		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-intron	ENST00000377119	ENST00000376946		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000377119	ENST00000483085		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-3CDS	ENST00000464278	ENST00000376980		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-intron	ENST00000464278	ENST00000376946		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000464278	ENST00000483085		TCGA	LD	BRCA	TCGA-D8-A1XU-01A	NEBL	chr10	21250601	-	DNAJC1	chr10	22095028	-
intron-5UTR	ENST00000448637	ENST00000412955		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
intron-5UTR	ENST00000448637	ENST00000320741		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
intron-5UTR	ENST00000448637	ENST00000444204		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5UTR-5UTR	ENST00000312675	ENST00000412955		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5UTR-5UTR	ENST00000312675	ENST00000320741		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5UTR-5UTR	ENST00000312675	ENST00000444204		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5UTR-5UTR	ENST00000543006	ENST00000412955		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5UTR-5UTR	ENST00000543006	ENST00000320741		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5UTR-5UTR	ENST00000543006	ENST00000444204		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
intron-5UTR	ENST00000471917	ENST00000412955		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
intron-5UTR	ENST00000471917	ENST00000320741		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
intron-5UTR	ENST00000471917	ENST00000444204		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	LPP	chr3	187943315	+	ADIPOQ	chr3	186570840	+
5CDS-5UTR	ENST00000541194	ENST00000438125		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000541194	ENST00000435769		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000541194	ENST00000343721		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-intron	ENST00000541194	ENST00000438904		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000537928	ENST00000438125		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000537928	ENST00000435769		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000537928	ENST00000343721		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-intron	ENST00000537928	ENST00000438904		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000378555	ENST00000438125		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000378555	ENST00000435769		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000378555	ENST00000343721		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-intron	ENST00000378555	ENST00000438904		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000322985	ENST00000438125		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000322985	ENST00000435769		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-5UTR	ENST00000322985	ENST00000343721		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
5CDS-intron	ENST00000322985	ENST00000438904		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
intron-5UTR	ENST00000465001	ENST00000438125		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
intron-5UTR	ENST00000465001	ENST00000435769		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
intron-5UTR	ENST00000465001	ENST00000343721		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
intron-intron	ENST00000465001	ENST00000438904		TCGA	LD	BRCA	TCGA-D8-A1XW-01A	PODXL	chr7	131241019	-	TYW1B	chr7	72093982	-
In-frame	ENST00000540320	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000540320	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000540320	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
5CDS-intron	ENST00000540320	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000400445	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000400445	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000400445	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
5CDS-intron	ENST00000400445	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000310336	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000310336	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000310336	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
5CDS-intron	ENST00000310336	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000379939	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000379939	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
In-frame	ENST00000379939	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
5CDS-intron	ENST00000379939	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000537702	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000537702	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000537702	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-intron	ENST00000537702	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000379922	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000379922	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000379922	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-intron	ENST00000379922	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000461581	ENST00000443765		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000461581	ENST00000239891		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-3CDS	ENST00000461581	ENST00000413537		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
intron-intron	ENST00000461581	ENST00000496689		TCGA	LD	BRCA	TCGA-D8-A1XY-01A	NBEA	chr13	35691630	+	ALG5	chr13	37546173	-
5CDS-5UTR	ENST00000392038	ENST00000592694		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000337679		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000392124		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000339413		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000592246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000329420		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000591784		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000591755		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000392038	ENST00000587361		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000592694		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000337679		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000392124		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000339413		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000592246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000329420		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000591784		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000591755		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424901	ENST00000587361		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000592694		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000337679		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000392124		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000339413		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000592246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000329420		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000591784		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000591755		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000311278	ENST00000587361		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000592694		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000337679		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000392124		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000339413		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000592246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000329420		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000591784		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000591755		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000579047	ENST00000587361		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000592694		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000337679		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000392124		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000339413		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000592246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000329420		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000591784		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000591755		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000587361		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	AKT2	chr19	40761065	-	YIF1B	chr19	38800283	-
5CDS-intron	ENST00000404338	ENST00000341807		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ARHGAP35	chr19	47440665	+	COL22A1	chr8	139793223	-
5CDS-intron	ENST00000404338	ENST00000303045		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ARHGAP35	chr19	47440665	+	COL22A1	chr8	139793223	-
5CDS-intron	ENST00000404338	ENST00000435777		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ARHGAP35	chr19	47440665	+	COL22A1	chr8	139793223	-
intron-intron	ENST00000598548	ENST00000341807		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ARHGAP35	chr19	47440665	+	COL22A1	chr8	139793223	-
intron-intron	ENST00000598548	ENST00000303045		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ARHGAP35	chr19	47440665	+	COL22A1	chr8	139793223	-
intron-intron	ENST00000598548	ENST00000435777		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ARHGAP35	chr19	47440665	+	COL22A1	chr8	139793223	-
intron-3CDS	ENST00000393408	ENST00000269033		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
intron-3CDS	ENST00000393408	ENST00000540801		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
intron-5UTR	ENST00000393408	ENST00000324677		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
intron-intron	ENST00000393408	ENST00000582084		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
intron-intron	ENST00000393408	ENST00000590153		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
intron-intron	ENST00000393408	ENST00000579954		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-3CDS	ENST00000225603	ENST00000269033		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-3CDS	ENST00000225603	ENST00000540801		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-5UTR	ENST00000225603	ENST00000324677		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-intron	ENST00000225603	ENST00000582084		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-intron	ENST00000225603	ENST00000590153		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-intron	ENST00000225603	ENST00000579954		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-3CDS	ENST00000495350	ENST00000269033		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-3CDS	ENST00000495350	ENST00000540801		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-5UTR	ENST00000495350	ENST00000324677		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-intron	ENST00000495350	ENST00000582084		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-intron	ENST00000495350	ENST00000590153		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5UTR-intron	ENST00000495350	ENST00000579954		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CBX1	chr17	46178630	-	SSH2	chr17	28022541	-
5CDS-5UTR	ENST00000374379	ENST00000471889		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000374379	ENST00000377479		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000374379	ENST00000289877		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000374379	ENST00000481265		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
3UTR-5UTR	ENST00000497755	ENST00000471889		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
3UTR-5UTR	ENST00000497755	ENST00000377479		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
3UTR-intron	ENST00000497755	ENST00000289877		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
3UTR-intron	ENST00000497755	ENST00000481265		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	CLIC4	chr1	25072116	+	SLC45A1	chr1	8384366	+
Frame-shit	ENST00000403028	ENST00000299338		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000403028	ENST00000561064		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000403028	ENST00000558594		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000403028	ENST00000560246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
5CDS-intron	ENST00000403028	ENST00000558862		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000329873	ENST00000299338		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000329873	ENST00000561064		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000329873	ENST00000558594		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000329873	ENST00000560246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
5CDS-intron	ENST00000329873	ENST00000558862		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
3UTR-3CDS	ENST00000559223	ENST00000299338		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
3UTR-3CDS	ENST00000559223	ENST00000561064		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
3UTR-3CDS	ENST00000559223	ENST00000558594		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
3UTR-3CDS	ENST00000559223	ENST00000560246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
3UTR-intron	ENST00000559223	ENST00000558862		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000558653	ENST00000299338		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000558653	ENST00000561064		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000558653	ENST00000558594		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000558653	ENST00000560246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
5CDS-intron	ENST00000558653	ENST00000558862		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000251250	ENST00000299338		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000251250	ENST00000561064		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000251250	ENST00000558594		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
Frame-shit	ENST00000251250	ENST00000560246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
5CDS-intron	ENST00000251250	ENST00000558862		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
intron-3CDS	ENST00000415425	ENST00000299338		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
intron-3CDS	ENST00000415425	ENST00000561064		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
intron-3CDS	ENST00000415425	ENST00000558594		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
intron-3CDS	ENST00000415425	ENST00000560246		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
intron-intron	ENST00000415425	ENST00000558862		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	DTWD1	chr15	49917628	+	FAM227B	chr15	49880280	-
5UTR-3CDS	ENST00000395965	ENST00000333274		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000395965	ENST00000509503		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-intron	ENST00000395965	ENST00000510359		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000505869	ENST00000333274		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000505869	ENST00000509503		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-intron	ENST00000505869	ENST00000510359		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000509739	ENST00000333274		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000509739	ENST00000509503		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
intron-intron	ENST00000509739	ENST00000510359		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000509163	ENST00000333274		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000509163	ENST00000509503		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
5UTR-intron	ENST00000509163	ENST00000510359		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000504768	ENST00000333274		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000504768	ENST00000509503		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
intron-intron	ENST00000504768	ENST00000510359		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	FAM172A	chr5	93447216	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000372396	ENST00000372425		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
Frame-shit	ENST00000372396	ENST00000583037		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
Frame-shit	ENST00000372396	ENST00000372434		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
Frame-shit	ENST00000372396	ENST00000372432		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
Frame-shit	ENST00000372396	ENST00000372426		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
Frame-shit	ENST00000372396	ENST00000486909		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000463151	ENST00000372425		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000463151	ENST00000583037		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000463151	ENST00000372434		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000463151	ENST00000372432		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000463151	ENST00000372426		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
intron-3CDS	ENST00000463151	ENST00000486909		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	KDM4A	chr1	44149475	+	HYI	chr1	43917990	-
Frame-shit	ENST00000305949	ENST00000375155		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	MTBP	chr8	121458753	+	PQLC2	chr1	19651989	+
Frame-shit	ENST00000305949	ENST00000375153		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	MTBP	chr8	121458753	+	PQLC2	chr1	19651989	+
Frame-shit	ENST00000305949	ENST00000400548		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	MTBP	chr8	121458753	+	PQLC2	chr1	19651989	+
intron-3CDS	ENST00000519841	ENST00000375155		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	MTBP	chr8	121458753	+	PQLC2	chr1	19651989	+
intron-3CDS	ENST00000519841	ENST00000375153		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	MTBP	chr8	121458753	+	PQLC2	chr1	19651989	+
intron-3CDS	ENST00000519841	ENST00000400548		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	MTBP	chr8	121458753	+	PQLC2	chr1	19651989	+
5CDS-5UTR	ENST00000298925	ENST00000376067		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000298925	ENST00000280245		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000298925	ENST00000342404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-intron	ENST00000298925	ENST00000529676		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000357134	ENST00000376067		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000357134	ENST00000280245		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000357134	ENST00000342404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-intron	ENST00000357134	ENST00000529676		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000325319	ENST00000376067		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000325319	ENST00000280245		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000325319	ENST00000342404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-intron	ENST00000325319	ENST00000529676		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000532434	ENST00000376067		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000532434	ENST00000280245		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-5UTR	ENST00000532434	ENST00000342404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5CDS-intron	ENST00000532434	ENST00000529676		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
intron-5UTR	ENST00000529218	ENST00000376067		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
intron-5UTR	ENST00000529218	ENST00000280245		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
intron-5UTR	ENST00000529218	ENST00000342404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
intron-intron	ENST00000529218	ENST00000529676		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	NELL1	chr11	20982106	+	CCDC83	chr11	85576139	+
5UTR-3CDS	ENST00000599470	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000599470	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000599470	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-intron	ENST00000599470	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000321944	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000321944	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000321944	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-intron	ENST00000321944	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000358301	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000358301	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000358301	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-intron	ENST00000358301	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
3UTR-3CDS	ENST00000597766	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
3UTR-3CDS	ENST00000597766	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
3UTR-3CDS	ENST00000597766	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
3UTR-intron	ENST00000597766	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000593690	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000593690	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000593690	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-intron	ENST00000593690	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000599386	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000599386	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-3CDS	ENST00000599386	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
5UTR-intron	ENST00000599386	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000435673	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000435673	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000435673	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-intron	ENST00000435673	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000360442	ENST00000409235		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000360442	ENST00000410018		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000360442	ENST00000215069		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
intron-intron	ENST00000360442	ENST00000467739		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PAK4	chr19	39616559	+	CATSPERG	chr19	38848918	+
In-frame	ENST00000401827	ENST00000288368		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
5CDS-3UTR	ENST00000401827	ENST00000529398		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
In-frame	ENST00000396642	ENST00000288368		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
5CDS-3UTR	ENST00000396642	ENST00000529398		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
In-frame	ENST00000379419	ENST00000288368		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
5CDS-3UTR	ENST00000379419	ENST00000529398		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
5UTR-3CDS	ENST00000518667	ENST00000288368		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
5UTR-3UTR	ENST00000518667	ENST00000529398		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PDE7A	chr8	66647029	-	PREX2	chr8	68950394	+
5CDS-intron	ENST00000375155	ENST00000456518		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000397174		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000402904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000361191		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000397171		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000361705		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000326197		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000372595		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000337495		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000372596		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375155	ENST00000372597		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-5UTR	ENST00000375155	ENST00000472037		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000456518		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000397174		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000402904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000361191		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000397171		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000361705		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000326197		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000372595		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000337495		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000372596		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-intron	ENST00000375153	ENST00000372597		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
5CDS-5UTR	ENST00000375153	ENST00000472037		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000456518		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000397174		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000402904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000361191		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000397171		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000361705		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000326197		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000372595		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000337495		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000372596		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-intron	ENST00000400548	ENST00000372597		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
intron-5UTR	ENST00000400548	ENST00000472037		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	PQLC2	chr1	19644335	+	SCMH1	chr1	41499720	-
In-frame	ENST00000337907	ENST00000310638		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000337907	ENST00000371904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000337907	ENST00000462347		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000337907	ENST00000371905		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-intron	ENST00000337907	ENST00000496519		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-5UTR	ENST00000337907	ENST00000457840		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000377464	ENST00000310638		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000377464	ENST00000371904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000377464	ENST00000462347		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000377464	ENST00000371905		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-intron	ENST00000377464	ENST00000496519		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-5UTR	ENST00000377464	ENST00000457840		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000400907	ENST00000310638		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000400907	ENST00000371904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000400907	ENST00000462347		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
In-frame	ENST00000400907	ENST00000371905		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-intron	ENST00000400907	ENST00000496519		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-5UTR	ENST00000400907	ENST00000457840		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
Frame-shit	ENST00000400908	ENST00000310638		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
Frame-shit	ENST00000400908	ENST00000371904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
Frame-shit	ENST00000400908	ENST00000462347		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
Frame-shit	ENST00000400908	ENST00000371905		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-intron	ENST00000400908	ENST00000496519		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
5CDS-5UTR	ENST00000400908	ENST00000457840		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000476556	ENST00000310638		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000476556	ENST00000371904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000476556	ENST00000462347		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000476556	ENST00000371905		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-intron	ENST00000476556	ENST00000496519		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-5UTR	ENST00000476556	ENST00000457840		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000460659	ENST00000310638		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000460659	ENST00000371904		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000460659	ENST00000462347		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-3CDS	ENST00000460659	ENST00000371905		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-intron	ENST00000460659	ENST00000496519		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
intron-5UTR	ENST00000460659	ENST00000457840		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	CYP4A11	chr1	47403809	-
Frame-shit	ENST00000337907	ENST00000359600		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000337907	ENST00000464588		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000377464	ENST00000359600		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000377464	ENST00000464588		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000400907	ENST00000359600		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000400907	ENST00000464588		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
In-frame	ENST00000400908	ENST00000359600		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000400908	ENST00000464588		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
intron-3CDS	ENST00000476556	ENST00000359600		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
intron-5UTR	ENST00000476556	ENST00000464588		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
intron-3CDS	ENST00000460659	ENST00000359600		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
intron-5UTR	ENST00000460659	ENST00000464588		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RERE	chr1	8525985	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000374550	ENST00000303635		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
5CDS-intron	ENST00000374550	ENST00000439411		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
5CDS-intron	ENST00000374550	ENST00000476163		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
5CDS-intron	ENST00000374550	ENST00000557126		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
5CDS-intron	ENST00000374550	ENST00000473578		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
5CDS-intron	ENST00000374550	ENST00000467404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
5CDS-intron	ENST00000374550	ENST00000476864		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-3CDS	ENST00000482370	ENST00000303635		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-intron	ENST00000482370	ENST00000439411		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-intron	ENST00000482370	ENST00000476163		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-intron	ENST00000482370	ENST00000557126		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-intron	ENST00000482370	ENST00000473578		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-intron	ENST00000482370	ENST00000467404		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
3UTR-intron	ENST00000482370	ENST00000476864		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	RPL11	chr1	24022398	+	CAMTA1	chr1	7805905	+
Frame-shit	ENST00000323848	ENST00000538789		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000323848	ENST00000481602		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000323848	ENST00000374298		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
Frame-shit	ENST00000447431	ENST00000538789		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000447431	ENST00000481602		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000447431	ENST00000374298		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
Frame-shit	ENST00000374389	ENST00000538789		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000374389	ENST00000481602		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000374389	ENST00000374298		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
3UTR-3CDS	ENST00000479034	ENST00000538789		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
3UTR-intron	ENST00000479034	ENST00000481602		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
3UTR-intron	ENST00000479034	ENST00000374298		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
In-frame	ENST00000537199	ENST00000538789		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000537199	ENST00000481602		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-intron	ENST00000537199	ENST00000374298		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	SRRM1	chr1	24981620	+	AUNIP	chr1	26164045	-
5CDS-5UTR	ENST00000261716	ENST00000524918		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000261716	ENST00000313028		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000261716	ENST00000525773		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000261716	ENST00000533665		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000536202	ENST00000524918		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000536202	ENST00000313028		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000536202	ENST00000525773		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000536202	ENST00000533665		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TAOK1	chr17	27818883	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000276692	ENST00000523502		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TATDN1	chr8	125551266	-	KB-1568E2.1	chr8	131611317	-
5UTR-5UTR	ENST00000519548	ENST00000523502		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TATDN1	chr8	125551266	-	KB-1568E2.1	chr8	131611317	-
intron-5UTR	ENST00000517678	ENST00000523502		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TATDN1	chr8	125551266	-	KB-1568E2.1	chr8	131611317	-
intron-5UTR	ENST00000521546	ENST00000523502		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TATDN1	chr8	125551266	-	KB-1568E2.1	chr8	131611317	-
5CDS-5UTR	ENST00000605953	ENST00000523502		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TATDN1	chr8	125551266	-	KB-1568E2.1	chr8	131611317	-
Frame-shit	ENST00000294543	ENST00000316156		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000294543	ENST00000373150		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000294543	ENST00000373151		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000294543	ENST00000474796		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000294543	ENST00000373148		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
In-frame	ENST00000375127	ENST00000316156		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
In-frame	ENST00000375127	ENST00000373150		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
In-frame	ENST00000375127	ENST00000373151		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000375127	ENST00000474796		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000375127	ENST00000373148		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000489814	ENST00000316156		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000489814	ENST00000373150		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000489814	ENST00000373151		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
intron-intron	ENST00000489814	ENST00000474796		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
intron-intron	ENST00000489814	ENST00000373148		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000375122	ENST00000316156		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000375122	ENST00000373150		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000375122	ENST00000373151		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000375122	ENST00000474796		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000375122	ENST00000373148		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	TMCO4	chr1	20097035	-	MAP7D1	chr1	36636572	+
5CDS-5UTR	ENST00000308650	ENST00000407627		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000308650	ENST00000596459		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000308650	ENST00000351593		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000308650	ENST00000593807		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000591998	ENST00000407627		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000591998	ENST00000596459		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000591998	ENST00000351593		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
5CDS-5UTR	ENST00000591998	ENST00000593807		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
intron-5UTR	ENST00000588336	ENST00000407627		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
intron-5UTR	ENST00000588336	ENST00000596459		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
intron-5UTR	ENST00000588336	ENST00000351593		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
intron-5UTR	ENST00000588336	ENST00000593807		TCGA	LD	BRCA	TCGA-D8-A1XZ-01A	ZNF699	chr19	9413054	-	ELAVL1	chr19	8056715	-
intron-3CDS	ENST00000354666	ENST00000472091		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	ELOVL2	chr6	10990648	-	ERVFRD-1	chr6	11103948	-
intron-3CDS	ENST00000354666	ENST00000542862		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	ELOVL2	chr6	10990648	-	ERVFRD-1	chr6	11103948	-
intron-3CDS	ENST00000360319	ENST00000369915		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000360319	ENST00000217905		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000360319	ENST00000369912		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-intron	ENST00000360319	ENST00000482044		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-3CDS	ENST00000422373	ENST00000369915		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-5UTR	ENST00000422373	ENST00000217905		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-5UTR	ENST00000422373	ENST00000369912		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-intron	ENST00000422373	ENST00000482044		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-3CDS	ENST00000369850	ENST00000369915		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-5UTR	ENST00000369850	ENST00000217905		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-5UTR	ENST00000369850	ENST00000369912		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
5UTR-intron	ENST00000369850	ENST00000482044		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-3CDS	ENST00000369856	ENST00000369915		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000369856	ENST00000217905		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000369856	ENST00000369912		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-intron	ENST00000369856	ENST00000482044		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-3CDS	ENST00000344736	ENST00000369915		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000344736	ENST00000217905		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000344736	ENST00000369912		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-intron	ENST00000344736	ENST00000482044		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-3CDS	ENST00000498491	ENST00000369915		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000498491	ENST00000217905		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-5UTR	ENST00000498491	ENST00000369912		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
intron-intron	ENST00000498491	ENST00000482044		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	FLNA	chrX	153602874	-	TKTL1	chrX	153533656	+
In-frame	ENST00000373548	ENST00000609129		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	HDAC1	chr1	32782383	+	ZBTB8B	chr1	32946492	+
5UTR-3CDS	ENST00000373541	ENST00000609129		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	HDAC1	chr1	32782383	+	ZBTB8B	chr1	32946492	+
intron-3CDS	ENST00000490081	ENST00000609129		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	HDAC1	chr1	32782383	+	ZBTB8B	chr1	32946492	+
In-frame	ENST00000406787	ENST00000265113		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000406787	ENST00000506725		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000406787	ENST00000381918		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
In-frame	ENST00000342303	ENST00000265113		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000342303	ENST00000506725		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000342303	ENST00000381918		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
In-frame	ENST00000407364	ENST00000265113		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000407364	ENST00000506725		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000407364	ENST00000381918		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
In-frame	ENST00000303459	ENST00000265113		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000303459	ENST00000506725		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
5CDS-intron	ENST00000303459	ENST00000381918		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
intron-3CDS	ENST00000403099	ENST00000265113		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
intron-intron	ENST00000403099	ENST00000506725		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
intron-intron	ENST00000403099	ENST00000381918		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
intron-3CDS	ENST00000379199	ENST00000265113		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
intron-intron	ENST00000379199	ENST00000506725		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
intron-intron	ENST00000379199	ENST00000381918		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	METTL15	chr11	28232745	+	SLC1A3	chr5	36674151	+
In-frame	ENST00000210444	ENST00000375147		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	NANS	chr9	100845304	+	NCBP1	chr9	100420922	+
5CDS-intron	ENST00000210444	ENST00000491445		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	NANS	chr9	100845304	+	NCBP1	chr9	100420922	+
3UTR-3CDS	ENST00000461452	ENST00000375147		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	NANS	chr9	100845304	+	NCBP1	chr9	100420922	+
3UTR-intron	ENST00000461452	ENST00000491445		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	NANS	chr9	100845304	+	NCBP1	chr9	100420922	+
In-frame	ENST00000265113	ENST00000406787		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000265113	ENST00000342303		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000265113	ENST00000407364		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000265113	ENST00000303459		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
5CDS-intron	ENST00000265113	ENST00000403099		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
5CDS-intron	ENST00000265113	ENST00000379199		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
intron-3CDS	ENST00000506725	ENST00000406787		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
intron-3CDS	ENST00000506725	ENST00000342303		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
intron-3CDS	ENST00000506725	ENST00000407364		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
intron-3CDS	ENST00000506725	ENST00000303459		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
intron-intron	ENST00000506725	ENST00000403099		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
intron-intron	ENST00000506725	ENST00000379199		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000381918	ENST00000406787		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000381918	ENST00000342303		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000381918	ENST00000407364		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
In-frame	ENST00000381918	ENST00000303459		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
5CDS-intron	ENST00000381918	ENST00000403099		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
5CDS-intron	ENST00000381918	ENST00000379199		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	SLC1A3	chr5	36671335	+	METTL15	chr11	28311753	+
5CDS-5UTR	ENST00000287387	ENST00000510636		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000287387	ENST00000261944		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000287387	ENST00000506348		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000523984	ENST00000510636		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000523984	ENST00000261944		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000523984	ENST00000506348		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
3UTR-5UTR	ENST00000517609	ENST00000510636		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
3UTR-5UTR	ENST00000517609	ENST00000261944		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
3UTR-5UTR	ENST00000517609	ENST00000506348		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000523356	ENST00000510636		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000523356	ENST00000261944		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000523356	ENST00000506348		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000518125	ENST00000510636		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000518125	ENST00000261944		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000518125	ENST00000506348		TCGA	LD	BRCA	TCGA-D8-A1Y0-01A	WDYHV1	chr8	124442273	+	CDHR2	chr5	175992339	+
In-frame	ENST00000341861	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
In-frame	ENST00000341861	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000358939	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000358939	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000300141	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000300141	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000321147	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000321147	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000321118	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000321118	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000339244	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
Frame-shit	ENST00000339244	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
In-frame	ENST00000559233	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
In-frame	ENST00000559233	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
intron-3CDS	ENST00000560048	ENST00000268138		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
intron-3CDS	ENST00000560048	ENST00000560985		TCGA	LD	BRCA	TCGA-D8-A1Y2-01A	DPP8	chr15	65790202	-	TICRR	chr15	90135278	+
intron-intron	ENST00000394071	ENST00000557325		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000394071	ENST00000334696		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000394071	ENST00000556242		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000394071	ENST00000554664		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000286523	ENST00000557325		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000286523	ENST00000334696		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000286523	ENST00000556242		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000286523	ENST00000554664		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000486739	ENST00000557325		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000486739	ENST00000334696		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000486739	ENST00000556242		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-intron	ENST00000486739	ENST00000554664		TCGA	LD	BRCA	TCGA-D8-A27F-01A	ELMSAN1	chr14	74193631	-	ENTPD5	chr14	74428062	-
intron-3CDS	ENST00000492698	ENST00000262376		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
intron-3CDS	ENST00000492698	ENST00000545171		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
intron-3CDS	ENST00000492698	ENST00000590769		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
intron-3CDS	ENST00000492698	ENST00000396658		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
intron-intron	ENST00000492698	ENST00000585857		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000252999	ENST00000262376		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000252999	ENST00000545171		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000252999	ENST00000590769		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000252999	ENST00000396658		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
5CDS-intron	ENST00000252999	ENST00000585857		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370692	ENST00000262376		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370692	ENST00000545171		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370692	ENST00000590769		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370692	ENST00000396658		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
5CDS-intron	ENST00000370692	ENST00000585857		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370677	ENST00000262376		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370677	ENST00000545171		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370677	ENST00000590769		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000370677	ENST00000396658		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
5CDS-intron	ENST00000370677	ENST00000585857		TCGA	LD	BRCA	TCGA-D8-A27F-01A	LAMA5	chr20	60937456	-	UBN1	chr16	4918834	+
In-frame	ENST00000416426	ENST00000573500		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000416426	ENST00000576221		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000416426	ENST00000268896		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000416426	ENST00000576183		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000416426	ENST00000325214		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
In-frame	ENST00000284073	ENST00000573500		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000284073	ENST00000576221		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000284073	ENST00000268896		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000284073	ENST00000576183		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000284073	ENST00000325214		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
In-frame	ENST00000322684	ENST00000573500		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000322684	ENST00000576221		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000322684	ENST00000268896		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-intron	ENST00000322684	ENST00000576183		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
5CDS-5UTR	ENST00000322684	ENST00000325214		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-3CDS	ENST00000442934	ENST00000573500		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000442934	ENST00000576221		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000442934	ENST00000268896		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000442934	ENST00000576183		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-5UTR	ENST00000442934	ENST00000325214		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-3CDS	ENST00000579180	ENST00000573500		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000579180	ENST00000576221		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000579180	ENST00000268896		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000579180	ENST00000576183		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-5UTR	ENST00000579180	ENST00000325214		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-3CDS	ENST00000579505	ENST00000573500		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000579505	ENST00000576221		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000579505	ENST00000268896		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-intron	ENST00000579505	ENST00000576183		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
intron-5UTR	ENST00000579505	ENST00000325214		TCGA	LD	BRCA	TCGA-D8-A27F-01A	MSI2	chr17	55339553	+	PCTP	chr17	53844696	+
Frame-shit	ENST00000378536	ENST00000367433		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000378536	ENST00000498426		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000378536	ENST00000367431		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000378536	ENST00000609185		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
5CDS-5UTR	ENST00000378536	ENST00000451324		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
5CDS-5UTR	ENST00000378536	ENST00000294725		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
intron-3CDS	ENST00000478223	ENST00000367433		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000478223	ENST00000498426		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000478223	ENST00000367431		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000478223	ENST00000609185		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
intron-5UTR	ENST00000478223	ENST00000451324		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
intron-5UTR	ENST00000478223	ENST00000294725		TCGA	LD	BRCA	TCGA-D8-A27F-01A	SKI	chr1	2161174	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000262376	ENST00000492698		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000262376	ENST00000252999		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000262376	ENST00000370692		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000262376	ENST00000370677		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000545171	ENST00000492698		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000545171	ENST00000252999		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000545171	ENST00000370692		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000545171	ENST00000370677		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000590769	ENST00000492698		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000590769	ENST00000252999		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000590769	ENST00000370692		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000590769	ENST00000370677		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000396658	ENST00000492698		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000396658	ENST00000252999		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000396658	ENST00000370692		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5CDS-intron	ENST00000396658	ENST00000370677		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
3UTR-intron	ENST00000585857	ENST00000492698		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
3UTR-intron	ENST00000585857	ENST00000252999		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
3UTR-intron	ENST00000585857	ENST00000370692		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
3UTR-intron	ENST00000585857	ENST00000370677		TCGA	LD	BRCA	TCGA-D8-A27F-01A	UBN1	chr16	4911103	+	LAMA5	chr20	60937608	-
5UTR-3CDS	ENST00000582809	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000582809	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000582809	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000582809	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
3UTR-3CDS	ENST00000577616	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
3UTR-3CDS	ENST00000577616	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
3UTR-3CDS	ENST00000577616	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
3UTR-3CDS	ENST00000577616	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000326270	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000326270	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000326270	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000326270	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000346027	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000346027	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000346027	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000346027	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000343388	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000343388	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000343388	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000343388	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000542523	ENST00000580974		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000542523	ENST00000299954		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000542523	ENST00000335257		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000542523	ENST00000581322		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TLK2	chr17	60558567	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000581396	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000581396	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000581396	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000379504	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000379504	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000379504	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000318094	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000318094	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000318094	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000395739	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000395739	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000395739	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000535933	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000535933	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000535933	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000540946	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000540946	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000540946	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000542206	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
In-frame	ENST00000542206	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
5CDS-intron	ENST00000542206	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
intron-3CDS	ENST00000478943	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
intron-3CDS	ENST00000478943	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
intron-intron	ENST00000478943	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
intron-3CDS	ENST00000577517	ENST00000361658		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
intron-3CDS	ENST00000577517	ENST00000395544		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
intron-intron	ENST00000577517	ENST00000580130		TCGA	LD	BRCA	TCGA-D8-A27G-01A	TOM1L2	chr17	17782941	-	ULK2	chr17	19769141	-
Frame-shit	ENST00000382456	ENST00000359246		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000382456	ENST00000375376		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000411763	ENST00000359246		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000411763	ENST00000375376		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000292807	ENST00000359246		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000292807	ENST00000375376		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000439647	ENST00000359246		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
Frame-shit	ENST00000439647	ENST00000375376		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
intron-3CDS	ENST00000461733	ENST00000359246		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
intron-3CDS	ENST00000461733	ENST00000375376		TCGA	LD	BRCA	TCGA-D8-A27H-01A	AP2M1	chr3	183898039	+	PHF2	chr9	96392252	+
5CDS-5UTR	ENST00000341701	ENST00000392197		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-3UTR	ENST00000341701	ENST00000442282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-intron	ENST00000341701	ENST00000262630		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
3UTR-5UTR	ENST00000607650	ENST00000392197		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
3UTR-3UTR	ENST00000607650	ENST00000442282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
3UTR-intron	ENST00000607650	ENST00000262630		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-5UTR	ENST00000222270	ENST00000392197		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-3UTR	ENST00000222270	ENST00000442282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-intron	ENST00000222270	ENST00000262630		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-5UTR	ENST00000420124	ENST00000392197		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-3UTR	ENST00000420124	ENST00000442282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5CDS-intron	ENST00000420124	ENST00000262630		TCGA	LD	BRCA	TCGA-D8-A27H-01A	KMT2B	chr19	36209283	+	ZBTB32	chr19	36203819	+
5UTR-5UTR	ENST00000369981	ENST00000350896		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369981	ENST00000262101		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369981	ENST00000445506		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369981	ENST00000355282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-intron	ENST00000369981	ENST00000518343		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369981	ENST00000381998		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369981	ENST00000536385		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369985	ENST00000350896		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369985	ENST00000262101		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369985	ENST00000445506		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369985	ENST00000355282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-intron	ENST00000369985	ENST00000518343		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369985	ENST00000381998		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369985	ENST00000536385		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369977	ENST00000350896		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369977	ENST00000262101		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369977	ENST00000445506		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369977	ENST00000355282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-intron	ENST00000369977	ENST00000518343		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369977	ENST00000381998		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5UTR-5UTR	ENST00000369977	ENST00000536385		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000369975	ENST00000350896		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000369975	ENST00000262101		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000369975	ENST00000445506		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000369975	ENST00000355282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-intron	ENST00000369975	ENST00000518343		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000369975	ENST00000381998		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000369975	ENST00000536385		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000462633	ENST00000350896		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000462633	ENST00000262101		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000462633	ENST00000445506		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000462633	ENST00000355282		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-intron	ENST00000462633	ENST00000518343		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000462633	ENST00000381998		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
intron-5UTR	ENST00000462633	ENST00000536385		TCGA	LD	BRCA	TCGA-D8-A27H-01A	MYO6	chr6	76459140	+	MSR1	chr8	16035501	-
5CDS-3UTR	ENST00000397661	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000397661	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592199	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592199	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000587760	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000587760	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585575	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585575	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000360105	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000360105	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000588228	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000588228	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000587260	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000587260	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000358552	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000358552	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000588680	ENST00000585548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000588680	ENST00000317060		TCGA	LD	BRCA	TCGA-D8-A27H-01A	NFIX	chr19	13136366	+	DAND5	chr19	13084203	+
5CDS-intron	ENST00000281394	ENST00000462705		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000393785		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000481632		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000471418		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000357258		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000464560		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000488663		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000281394	ENST00000474710		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000462705		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000393785		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000481632		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000471418		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000357258		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000464560		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000488663		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000294952	ENST00000474710		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000462705		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000393785		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000481632		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000471418		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000357258		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000464560		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000488663		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
5CDS-intron	ENST00000449090	ENST00000474710		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000462705		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000393785		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000481632		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000471418		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000357258		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000464560		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000488663		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
intron-intron	ENST00000476199	ENST00000474710		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PPP1R21	chr2	48713897	+	ZBTB20	chr3	114301113	-
In-frame	ENST00000313010	ENST00000533486		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000313010	ENST00000534141		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000313010	ENST00000260056		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000313010	ENST00000527633		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000313010	ENST00000525117		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000313010	ENST00000532548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000533486		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000534141		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000260056		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000527633		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000393399	ENST00000525117		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000393399	ENST00000532548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000533486		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000534141		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000260056		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000527633		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000535099	ENST00000525117		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000535099	ENST00000532548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000533486		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000534141		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000260056		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000527633		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000525772	ENST00000525117		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000525772	ENST00000532548		TCGA	LD	BRCA	TCGA-D8-A27H-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
Frame-shit	ENST00000268099	ENST00000393469		TCGA	LD	BRCA	TCGA-D8-A27H-01A	SCAMP2	chr15	75165540	-	SLC12A8	chr3	124811042	-
Frame-shit	ENST00000268099	ENST00000423114		TCGA	LD	BRCA	TCGA-D8-A27H-01A	SCAMP2	chr15	75165540	-	SLC12A8	chr3	124811042	-
Frame-shit	ENST00000268099	ENST00000469902		TCGA	LD	BRCA	TCGA-D8-A27H-01A	SCAMP2	chr15	75165540	-	SLC12A8	chr3	124811042	-
5CDS-intron	ENST00000268099	ENST00000314584		TCGA	LD	BRCA	TCGA-D8-A27H-01A	SCAMP2	chr15	75165540	-	SLC12A8	chr3	124811042	-
5CDS-intron	ENST00000268099	ENST00000430155		TCGA	LD	BRCA	TCGA-D8-A27H-01A	SCAMP2	chr15	75165540	-	SLC12A8	chr3	124811042	-
5CDS-intron	ENST00000268099	ENST00000465475		TCGA	LD	BRCA	TCGA-D8-A27H-01A	SCAMP2	chr15	75165540	-	SLC12A8	chr3	124811042	-
Frame-shit	ENST00000040877	ENST00000408888		TCGA	LD	BRCA	TCGA-D8-A27H-01A	TARBP1	chr1	234582549	-	RBM34	chr1	235295312	-
Frame-shit	ENST00000040877	ENST00000366606		TCGA	LD	BRCA	TCGA-D8-A27H-01A	TARBP1	chr1	234582549	-	RBM34	chr1	235295312	-
5CDS-5UTR	ENST00000040877	ENST00000495224		TCGA	LD	BRCA	TCGA-D8-A27H-01A	TARBP1	chr1	234582549	-	RBM34	chr1	235295312	-
intron-3CDS	ENST00000483404	ENST00000408888		TCGA	LD	BRCA	TCGA-D8-A27H-01A	TARBP1	chr1	234582549	-	RBM34	chr1	235295312	-
intron-3CDS	ENST00000483404	ENST00000366606		TCGA	LD	BRCA	TCGA-D8-A27H-01A	TARBP1	chr1	234582549	-	RBM34	chr1	235295312	-
intron-5UTR	ENST00000483404	ENST00000495224		TCGA	LD	BRCA	TCGA-D8-A27H-01A	TARBP1	chr1	234582549	-	RBM34	chr1	235295312	-
5UTR-intron	ENST00000462705	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000462705	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000462705	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000393785	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000393785	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000393785	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000481632	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000481632	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000481632	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000471418	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000471418	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000471418	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000357258	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000357258	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000357258	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000464560	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000464560	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000464560	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000488663	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000488663	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5UTR-intron	ENST00000488663	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000474710	ENST00000404752		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000474710	ENST00000406226		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
intron-intron	ENST00000474710	ENST00000309835		TCGA	LD	BRCA	TCGA-D8-A27H-01A	ZBTB20	chr3	114412375	-	STON1	chr2	48757019	+
5CDS-5UTR	ENST00000520539	ENST00000397547		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-5UTR	ENST00000520539	ENST00000293897		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-intron	ENST00000520539	ENST00000562758		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-5UTR	ENST00000220959	ENST00000397547		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-5UTR	ENST00000220959	ENST00000293897		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-intron	ENST00000220959	ENST00000562758		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
intron-5UTR	ENST00000518205	ENST00000397547		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
intron-5UTR	ENST00000518205	ENST00000293897		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
intron-intron	ENST00000518205	ENST00000562758		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-5UTR	ENST00000521922	ENST00000397547		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-5UTR	ENST00000521922	ENST00000293897		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
5CDS-intron	ENST00000521922	ENST00000562758		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
intron-5UTR	ENST00000519528	ENST00000397547		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
intron-5UTR	ENST00000519528	ENST00000293897		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
intron-intron	ENST00000519528	ENST00000562758		TCGA	LD	BRCA	TCGA-D8-A27L-01A	UBR5	chr8	103424401	-	SSTR5	chr16	1128842	+
Frame-shit	ENST00000404338	ENST00000395957		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000404338	ENST00000395958		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000404338	ENST00000457309		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000404338	ENST00000395956		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000404338	ENST00000353245		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000404338	ENST00000522542		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000404338	ENST00000521309		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000404338	ENST00000522819		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000404338	ENST00000395953		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000404338	ENST00000395948		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000404338	ENST00000395951		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000404338	ENST00000419477		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000404338	ENST00000492736		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000598548	ENST00000395957		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000598548	ENST00000395958		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000598548	ENST00000457309		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000598548	ENST00000395956		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000598548	ENST00000353245		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000598548	ENST00000522542		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000598548	ENST00000521309		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000598548	ENST00000522819		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000598548	ENST00000395953		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000598548	ENST00000395948		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000598548	ENST00000395951		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000598548	ENST00000419477		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
intron-intron	ENST00000598548	ENST00000492736		TCGA	LD	BRCA	TCGA-D8-A27M-01A	ARHGAP35	chr19	47492932	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000381527	ENST00000429990		TCGA	LD	BRCA	TCGA-D8-A27M-01A	CDK8	chr13	26828906	+	NPIPB15	chr16	74415414	+
Frame-shit	ENST00000536792	ENST00000429990		TCGA	LD	BRCA	TCGA-D8-A27M-01A	CDK8	chr13	26828906	+	NPIPB15	chr16	74415414	+
intron-3CDS	ENST00000480323	ENST00000429990		TCGA	LD	BRCA	TCGA-D8-A27M-01A	CDK8	chr13	26828906	+	NPIPB15	chr16	74415414	+
In-frame	ENST00000281772	ENST00000436443		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000281772	ENST00000342788		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000281772	ENST00000402597		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
5CDS-intron	ENST00000281772	ENST00000484474		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000418791	ENST00000436443		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000418791	ENST00000342788		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000418791	ENST00000402597		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
5CDS-intron	ENST00000418791	ENST00000484474		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000452086	ENST00000436443		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000452086	ENST00000342788		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000452086	ENST00000402597		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
5CDS-intron	ENST00000452086	ENST00000484474		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
intron-3CDS	ENST00000429908	ENST00000436443		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
intron-3CDS	ENST00000429908	ENST00000342788		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
intron-3CDS	ENST00000429908	ENST00000402597		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
intron-intron	ENST00000429908	ENST00000484474		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
Frame-shit	ENST00000457374	ENST00000436443		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
Frame-shit	ENST00000457374	ENST00000342788		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
Frame-shit	ENST00000457374	ENST00000402597		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
5CDS-intron	ENST00000457374	ENST00000484474		TCGA	LD	BRCA	TCGA-D8-A27M-01A	KANSL1L	chr2	210993755	-	ERBB4	chr2	212495319	-
In-frame	ENST00000564978	ENST00000331351		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000564978	ENST00000475436		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
In-frame	ENST00000320805	ENST00000331351		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000320805	ENST00000475436		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
intron-3CDS	ENST00000562977	ENST00000331351		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
intron-3UTR	ENST00000562977	ENST00000475436		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
In-frame	ENST00000568148	ENST00000331351		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000568148	ENST00000475436		TCGA	LD	BRCA	TCGA-D8-A27M-01A	NFATC2IP	chr16	28970421	+	HS3ST4	chr16	26146933	+
5CDS-5UTR	ENST00000433197	ENST00000338859		TCGA	LD	BRCA	TCGA-D8-A27N-01A	ERN1	chr17	62207336	-	SMTNL2	chr17	4495656	+
5CDS-5UTR	ENST00000433197	ENST00000389313		TCGA	LD	BRCA	TCGA-D8-A27N-01A	ERN1	chr17	62207336	-	SMTNL2	chr17	4495656	+
intron-5UTR	ENST00000577567	ENST00000338859		TCGA	LD	BRCA	TCGA-D8-A27N-01A	ERN1	chr17	62207336	-	SMTNL2	chr17	4495656	+
intron-5UTR	ENST00000577567	ENST00000389313		TCGA	LD	BRCA	TCGA-D8-A27N-01A	ERN1	chr17	62207336	-	SMTNL2	chr17	4495656	+
intron-5UTR	ENST00000606895	ENST00000338859		TCGA	LD	BRCA	TCGA-D8-A27N-01A	ERN1	chr17	62207336	-	SMTNL2	chr17	4495656	+
intron-5UTR	ENST00000606895	ENST00000389313		TCGA	LD	BRCA	TCGA-D8-A27N-01A	ERN1	chr17	62207336	-	SMTNL2	chr17	4495656	+
5CDS-3UTR	ENST00000231368	ENST00000504876		TCGA	LD	BRCA	TCGA-D8-A27R-01A	LNPEP	chr5	96339250	+	PART1	chr5	59816847	+
5CDS-3UTR	ENST00000395770	ENST00000504876		TCGA	LD	BRCA	TCGA-D8-A27R-01A	LNPEP	chr5	96339250	+	PART1	chr5	59816847	+
intron-3UTR	ENST00000395784	ENST00000504876		TCGA	LD	BRCA	TCGA-D8-A27R-01A	LNPEP	chr5	96339250	+	PART1	chr5	59816847	+
In-frame	ENST00000321560	ENST00000539941		TCGA	LD	BRCA	TCGA-D8-A27R-01A	PLD6	chr17	17109174	-	COPS3	chr17	17158259	-
In-frame	ENST00000321560	ENST00000268717		TCGA	LD	BRCA	TCGA-D8-A27R-01A	PLD6	chr17	17109174	-	COPS3	chr17	17158259	-
In-frame	ENST00000321560	ENST00000439936		TCGA	LD	BRCA	TCGA-D8-A27R-01A	PLD6	chr17	17109174	-	COPS3	chr17	17158259	-
In-frame	ENST00000393283	ENST00000540320		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000393283	ENST00000400445		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000393283	ENST00000310336		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000393283	ENST00000379939		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000393283	ENST00000537702		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5CDS-intron	ENST00000393283	ENST00000379922		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5CDS-intron	ENST00000393283	ENST00000461581		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000272454	ENST00000540320		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000272454	ENST00000400445		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000272454	ENST00000310336		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000272454	ENST00000379939		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000272454	ENST00000537702		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5CDS-intron	ENST00000272454	ENST00000379922		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5CDS-intron	ENST00000272454	ENST00000461581		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000016946	ENST00000540320		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000016946	ENST00000400445		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000016946	ENST00000310336		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000016946	ENST00000379939		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
In-frame	ENST00000016946	ENST00000537702		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5CDS-intron	ENST00000016946	ENST00000379922		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5CDS-intron	ENST00000016946	ENST00000461581		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-3CDS	ENST00000495582	ENST00000540320		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-3CDS	ENST00000495582	ENST00000400445		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-3CDS	ENST00000495582	ENST00000310336		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-3CDS	ENST00000495582	ENST00000379939		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-3CDS	ENST00000495582	ENST00000537702		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-intron	ENST00000495582	ENST00000379922		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
intron-intron	ENST00000495582	ENST00000461581		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RGPD5	chr2	110565981	+	NBEA	chr13	36158035	+
5UTR-intron	ENST00000426256	ENST00000475548		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000426256	ENST00000358743		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000426256	ENST00000347557		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000426256	ENST00000333137		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000426256	ENST00000404574		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000326132	ENST00000475548		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000326132	ENST00000358743		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000326132	ENST00000347557		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000326132	ENST00000333137		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000326132	ENST00000404574		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000266252	ENST00000475548		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000266252	ENST00000358743		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000266252	ENST00000347557		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000266252	ENST00000333137		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
5UTR-intron	ENST00000266252	ENST00000404574		TCGA	LD	BRCA	TCGA-D8-A27R-01A	RNF185	chr22	31556289	+	SMTN	chr22	31493255	+
In-frame	ENST00000457346	ENST00000328194		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000457346	ENST00000530044		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-5UTR	ENST00000457346	ENST00000527700		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-intron	ENST00000457346	ENST00000526523		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000309263	ENST00000328194		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000309263	ENST00000530044		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-5UTR	ENST00000309263	ENST00000527700		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-intron	ENST00000309263	ENST00000526523		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000450649	ENST00000328194		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000450649	ENST00000530044		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-5UTR	ENST00000450649	ENST00000527700		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-intron	ENST00000450649	ENST00000526523		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000520467	ENST00000328194		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
In-frame	ENST00000520467	ENST00000530044		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-5UTR	ENST00000520467	ENST00000527700		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
5CDS-intron	ENST00000520467	ENST00000526523		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
intron-3CDS	ENST00000534295	ENST00000328194		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
intron-3CDS	ENST00000534295	ENST00000530044		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
intron-5UTR	ENST00000534295	ENST00000527700		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
intron-intron	ENST00000534295	ENST00000526523		TCGA	LD	BRCA	TCGA-D8-A27R-01A	SCUBE2	chr11	9087438	-	DENND5A	chr11	9192324	-
Frame-shit	ENST00000389554	ENST00000409682		TCGA	LD	BRCA	TCGA-D8-A27R-01A	TBR1	chr2	162276768	+	PSMD14	chr2	162251589	+
Frame-shit	ENST00000410035	ENST00000409682		TCGA	LD	BRCA	TCGA-D8-A27R-01A	TBR1	chr2	162276768	+	PSMD14	chr2	162251589	+
3UTR-3CDS	ENST00000489530	ENST00000409682		TCGA	LD	BRCA	TCGA-D8-A27R-01A	TBR1	chr2	162276768	+	PSMD14	chr2	162251589	+
5CDS-intron	ENST00000439730	ENST00000247271		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000439730	ENST00000584094		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
intron-intron	ENST00000576910	ENST00000247271		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
intron-intron	ENST00000576910	ENST00000584094		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000393456	ENST00000247271		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000393456	ENST00000584094		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000415811	ENST00000247271		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000415811	ENST00000584094		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
intron-intron	ENST00000575949	ENST00000247271		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
intron-intron	ENST00000575949	ENST00000584094		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000225567	ENST00000247271		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5CDS-intron	ENST00000225567	ENST00000584094		TCGA	LD	BRCA	TCGA-D8-A27T-01A	GOSR2	chr17	45012535	+	OMG	chr17	29605258	-
5UTR-5UTR	ENST00000380752	ENST00000483209		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
5UTR-5UTR	ENST00000380752	ENST00000467604		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
5UTR-intron	ENST00000380752	ENST00000471675		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
5UTR-5UTR	ENST00000380752	ENST00000359213		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
5UTR-5UTR	ENST00000380752	ENST00000393765		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
5UTR-intron	ENST00000380752	ENST00000460321		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
intron-5UTR	ENST00000473577	ENST00000483209		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
intron-5UTR	ENST00000473577	ENST00000467604		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
intron-intron	ENST00000473577	ENST00000471675		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
intron-5UTR	ENST00000473577	ENST00000359213		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
intron-5UTR	ENST00000473577	ENST00000393765		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
intron-intron	ENST00000473577	ENST00000460321		TCGA	LD	BRCA	TCGA-D8-A27V-01A	SLC7A1	chr13	30169553	-	B4GALT4	chr3	118949091	-
Frame-shit	ENST00000252599	ENST00000331495		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
Frame-shit	ENST00000252599	ENST00000328118		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
5CDS-3UTR	ENST00000252599	ENST00000592006		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
5CDS-intron	ENST00000252599	ENST00000587489		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
intron-3CDS	ENST00000601354	ENST00000331495		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
intron-3CDS	ENST00000601354	ENST00000328118		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
intron-3UTR	ENST00000601354	ENST00000592006		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
intron-intron	ENST00000601354	ENST00000587489		TCGA	LD	BRCA	TCGA-D8-A27W-01A	COLGALT1	chr19	17671253	+	FMNL1	chr17	43311494	+
intron-3CDS	ENST00000509990	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000509990	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000361059	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000361059	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000504203	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000504203	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000502929	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000502929	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000394800	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000394800	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000507197	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000507197	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000394805	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000394805	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000502499	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000502499	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000510056	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000510056	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000503811	ENST00000409494		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
5UTR-3CDS	ENST00000503811	ENST00000289272		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHA13	chr5	140358534	+
intron-3CDS	ENST00000509990	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000509990	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000361059	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000361059	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000504203	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000504203	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000502929	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000502929	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000394800	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000394800	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000507197	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-intron	ENST00000507197	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-3CDS	ENST00000394805	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-intron	ENST00000394805	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-3CDS	ENST00000502499	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-intron	ENST00000502499	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-3CDS	ENST00000510056	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-intron	ENST00000510056	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-3CDS	ENST00000503811	ENST00000253807		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
5UTR-intron	ENST00000503811	ENST00000409700		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC1	chr5	140358534	+
intron-3CDS	ENST00000509990	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
intron-3CDS	ENST00000361059	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
intron-3CDS	ENST00000504203	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
intron-3CDS	ENST00000502929	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
intron-3CDS	ENST00000394800	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
intron-3CDS	ENST00000507197	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
5UTR-3CDS	ENST00000394805	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
5UTR-3CDS	ENST00000502499	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
5UTR-3CDS	ENST00000510056	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
5UTR-3CDS	ENST00000503811	ENST00000289269		TCGA	LD	BRCA	TCGA-D8-A27W-01A	MATR3	chr5	138629494	+	PCDHAC2	chr5	140358534	+
intron-3UTR	ENST00000608456	ENST00000370951		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608456	ENST00000405432		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608456	ENST00000370950		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608456	ENST00000454435		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608456	ENST00000436161		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608456	ENST00000484162		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608456	ENST00000370949		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000368377	ENST00000370951		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000368377	ENST00000405432		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000368377	ENST00000370950		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000368377	ENST00000454435		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000368377	ENST00000436161		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000368377	ENST00000484162		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000368377	ENST00000370949		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608295	ENST00000370951		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608295	ENST00000405432		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608295	ENST00000370950		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608295	ENST00000454435		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608295	ENST00000436161		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608295	ENST00000484162		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608295	ENST00000370949		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000398153	ENST00000370951		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000398153	ENST00000405432		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000398153	ENST00000370950		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000398153	ENST00000454435		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000398153	ENST00000436161		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000398153	ENST00000484162		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000398153	ENST00000370949		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608284	ENST00000370951		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608284	ENST00000405432		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608284	ENST00000370950		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608284	ENST00000454435		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-intron	ENST00000608284	ENST00000436161		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608284	ENST00000484162		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
intron-3UTR	ENST00000608284	ENST00000370949		TCGA	LD	BRCA	TCGA-D8-A3Z5-01A	HDDC2	chr6	125597604	-	SRSF11	chr1	70716729	+
5CDS-5UTR	ENST00000254624	ENST00000517349		TCGA	LD	BRCA	TCGA-D8-A4Z1-01A	EFR3A	chr8	132958880	+	SMIM18	chr8	30502027	+
5CDS-5UTR	ENST00000334503	ENST00000517349		TCGA	LD	BRCA	TCGA-D8-A4Z1-01A	EFR3A	chr8	132958880	+	SMIM18	chr8	30502027	+
5CDS-5UTR	ENST00000519656	ENST00000517349		TCGA	LD	BRCA	TCGA-D8-A4Z1-01A	EFR3A	chr8	132958880	+	SMIM18	chr8	30502027	+
intron-5UTR	ENST00000521940	ENST00000517349		TCGA	LD	BRCA	TCGA-D8-A4Z1-01A	EFR3A	chr8	132958880	+	SMIM18	chr8	30502027	+
Frame-shit	ENST00000311380	ENST00000263256		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000311380	ENST00000463886		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000375250	ENST00000263256		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000375250	ENST00000463886		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
intron-3CDS	ENST00000492028	ENST00000263256		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
intron-intron	ENST00000492028	ENST00000463886		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000344936	ENST00000263256		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000344936	ENST00000463886		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000396144	ENST00000263256		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000396144	ENST00000463886		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000375245	ENST00000263256		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000375245	ENST00000463886		TCGA	LD	BRCA	TCGA-E2-A105-01A	ARHGAP12	chr10	32197100	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000327979	ENST00000322927		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
Frame-shit	ENST00000327979	ENST00000426788		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
5CDS-intron	ENST00000327979	ENST00000494955		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
In-frame	ENST00000535356	ENST00000322927		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
In-frame	ENST00000535356	ENST00000426788		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
5CDS-intron	ENST00000535356	ENST00000494955		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
In-frame	ENST00000045083	ENST00000322927		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
In-frame	ENST00000045083	ENST00000426788		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
5CDS-intron	ENST00000045083	ENST00000494955		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
intron-3CDS	ENST00000462842	ENST00000322927		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
intron-3CDS	ENST00000462842	ENST00000426788		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
intron-intron	ENST00000462842	ENST00000494955		TCGA	LD	BRCA	TCGA-E2-A105-01A	FAM65C	chr20	49221182	-	ZNF335	chr20	44579234	-
Frame-shit	ENST00000284116	ENST00000314133		TCGA	LD	BRCA	TCGA-E2-A105-01A	GDPD1	chr17	57326146	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000581140	ENST00000314133		TCGA	LD	BRCA	TCGA-E2-A105-01A	GDPD1	chr17	57326146	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000581276	ENST00000314133		TCGA	LD	BRCA	TCGA-E2-A105-01A	GDPD1	chr17	57326146	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000311351	ENST00000287437		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
Frame-shit	ENST00000311351	ENST00000522563		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
5CDS-5UTR	ENST00000311351	ENST00000517315		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
5CDS-intron	ENST00000311351	ENST00000521460		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
Frame-shit	ENST00000520755	ENST00000287437		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
Frame-shit	ENST00000520755	ENST00000522563		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
5CDS-5UTR	ENST00000520755	ENST00000517315		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
5CDS-intron	ENST00000520755	ENST00000521460		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
intron-3CDS	ENST00000522515	ENST00000287437		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
intron-3CDS	ENST00000522515	ENST00000522563		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
intron-5UTR	ENST00000522515	ENST00000517315		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
intron-intron	ENST00000522515	ENST00000521460		TCGA	LD	BRCA	TCGA-E2-A105-01A	LSM1	chr8	38033793	-	NSMCE2	chr8	126163413	+
3UTR-3CDS	ENST00000395996	ENST00000276603		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
3UTR-3CDS	ENST00000395996	ENST00000276602		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
3UTR-intron	ENST00000395996	ENST00000520783		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
Frame-shit	ENST00000358544	ENST00000276603		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
Frame-shit	ENST00000358544	ENST00000276602		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
5CDS-intron	ENST00000358544	ENST00000520783		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
Frame-shit	ENST00000357162	ENST00000276603		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
Frame-shit	ENST00000357162	ENST00000276602		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
5CDS-intron	ENST00000357162	ENST00000520783		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-3CDS	ENST00000355155	ENST00000276603		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-3CDS	ENST00000355155	ENST00000276602		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-intron	ENST00000355155	ENST00000520783		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-3CDS	ENST00000441350	ENST00000276603		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-3CDS	ENST00000441350	ENST00000276602		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-intron	ENST00000441350	ENST00000520783		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-3CDS	ENST00000521932	ENST00000276603		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-3CDS	ENST00000521932	ENST00000276602		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
intron-intron	ENST00000521932	ENST00000520783		TCGA	LD	BRCA	TCGA-E2-A105-01A	VPS13B	chr8	100589861	+	TERF1	chr8	73932919	+
In-frame	ENST00000448100	ENST00000373973		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000448100	ENST00000349339		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000448100	ENST00000538900		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000355969	ENST00000373973		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000355969	ENST00000349339		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000355969	ENST00000538900		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000357119	ENST00000373973		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000357119	ENST00000349339		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000357119	ENST00000538900		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000369967	ENST00000373973		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000369967	ENST00000349339		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000369967	ENST00000538900		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000328969	ENST00000373973		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000328969	ENST00000349339		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
In-frame	ENST00000328969	ENST00000538900		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
3UTR-3CDS	ENST00000478385	ENST00000373973		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
3UTR-3CDS	ENST00000478385	ENST00000349339		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
3UTR-3CDS	ENST00000478385	ENST00000538900		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	CNBD2	chr20	34575317	+
Frame-shit	ENST00000448100	ENST00000427522		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
In-frame	ENST00000448100	ENST00000467148		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
5CDS-intron	ENST00000448100	ENST00000479540		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
Frame-shit	ENST00000355969	ENST00000427522		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
In-frame	ENST00000355969	ENST00000467148		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
5CDS-intron	ENST00000355969	ENST00000479540		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
Frame-shit	ENST00000357119	ENST00000427522		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
In-frame	ENST00000357119	ENST00000467148		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
5CDS-intron	ENST00000357119	ENST00000479540		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
Frame-shit	ENST00000369967	ENST00000427522		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
In-frame	ENST00000369967	ENST00000467148		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
5CDS-intron	ENST00000369967	ENST00000479540		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
Frame-shit	ENST00000328969	ENST00000427522		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
In-frame	ENST00000328969	ENST00000467148		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
5CDS-intron	ENST00000328969	ENST00000479540		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
3UTR-3CDS	ENST00000478385	ENST00000427522		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
3UTR-3CDS	ENST00000478385	ENST00000467148		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
3UTR-intron	ENST00000478385	ENST00000479540		TCGA	LD	BRCA	TCGA-E2-A105-01A	ZGPAT	chr20	62340516	+	HELZ2	chr20	62190723	-
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	BRCA	TCGA-E2-A106-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000373233	ENST00000371497		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
5CDS-intron	ENST00000373233	ENST00000603338		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
5CDS-intron	ENST00000373233	ENST00000329613		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
5CDS-intron	ENST00000309279	ENST00000371497		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
5CDS-intron	ENST00000309279	ENST00000603338		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
5CDS-intron	ENST00000309279	ENST00000329613		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
intron-intron	ENST00000373222	ENST00000371497		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
intron-intron	ENST00000373222	ENST00000603338		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
intron-intron	ENST00000373222	ENST00000329613		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
intron-intron	ENST00000480022	ENST00000371497		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
intron-intron	ENST00000480022	ENST00000603338		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
intron-intron	ENST00000480022	ENST00000329613		TCGA	LD	BRCA	TCGA-E2-A106-01A	CHD6	chr20	40074305	-	TSHZ2	chr20	52060790	+
5CDS-intron	ENST00000338825	ENST00000302979		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
5CDS-intron	ENST00000338825	ENST00000399697		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
5CDS-intron	ENST00000338825	ENST00000465887		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
5CDS-intron	ENST00000338825	ENST00000399696		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
intron-intron	ENST00000520657	ENST00000302979		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
intron-intron	ENST00000520657	ENST00000399697		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
intron-intron	ENST00000520657	ENST00000465887		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
intron-intron	ENST00000520657	ENST00000399696		TCGA	LD	BRCA	TCGA-E2-A106-01A	EIF4EBP1	chr8	37888236	+	POLR1D	chr13	28312844	+
In-frame	ENST00000372277	ENST00000078445		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372277	ENST00000252587		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372277	ENST00000595923		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372277	ENST00000602257		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372277	ENST00000602147		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
In-frame	ENST00000372281	ENST00000078445		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372281	ENST00000252587		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372281	ENST00000595923		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372281	ENST00000602257		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372281	ENST00000602147		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
In-frame	ENST00000372275	ENST00000078445		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372275	ENST00000252587		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372275	ENST00000595923		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372275	ENST00000602257		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372275	ENST00000602147		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
In-frame	ENST00000372274	ENST00000078445		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372274	ENST00000252587		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372274	ENST00000595923		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372274	ENST00000602257		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
5CDS-intron	ENST00000372274	ENST00000602147		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
3UTR-3CDS	ENST00000467529	ENST00000078445		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
3UTR-intron	ENST00000467529	ENST00000252587		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
3UTR-intron	ENST00000467529	ENST00000595923		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
3UTR-intron	ENST00000467529	ENST00000602257		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
3UTR-intron	ENST00000467529	ENST00000602147		TCGA	LD	BRCA	TCGA-E2-A106-01A	TMEM254	chr10	81841960	+	CREB3L3	chr19	4170137	+
3UTR-5UTR	ENST00000375465	ENST00000375114		TCGA	LD	BRCA	TCGA-E2-A107-01A	BPIFA4P	chr20	31781447	+	RALY	chr20	32619328	+
3UTR-5UTR	ENST00000375465	ENST00000246194		TCGA	LD	BRCA	TCGA-E2-A107-01A	BPIFA4P	chr20	31781447	+	RALY	chr20	32619328	+
3UTR-intron	ENST00000375465	ENST00000493399		TCGA	LD	BRCA	TCGA-E2-A107-01A	BPIFA4P	chr20	31781447	+	RALY	chr20	32619328	+
intron-3CDS	ENST00000541285	ENST00000205890		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
intron-intron	ENST00000541285	ENST00000412324		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
intron-intron	ENST00000541285	ENST00000418233		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
intron-intron	ENST00000541285	ENST00000585180		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
intron-intron	ENST00000541285	ENST00000451725		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
Frame-shit	ENST00000399138	ENST00000205890		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
5CDS-intron	ENST00000399138	ENST00000412324		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
5CDS-intron	ENST00000399138	ENST00000418233		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
5CDS-intron	ENST00000399138	ENST00000585180		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
5CDS-intron	ENST00000399138	ENST00000451725		TCGA	LD	BRCA	TCGA-E2-A108-01A	ALKBH5	chr17	18088327	+	MYO15A	chr17	18070904	+
In-frame	ENST00000443358	ENST00000261674		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000443358	ENST00000541286		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
5CDS-intron	ENST00000443358	ENST00000539506		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000376649	ENST00000261674		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000376649	ENST00000541286		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
5CDS-intron	ENST00000376649	ENST00000539506		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000440818	ENST00000261674		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000440818	ENST00000541286		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
5CDS-intron	ENST00000440818	ENST00000539506		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000542167	ENST00000261674		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
In-frame	ENST00000542167	ENST00000541286		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
5CDS-intron	ENST00000542167	ENST00000539506		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
intron-3CDS	ENST00000535067	ENST00000261674		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
intron-3CDS	ENST00000535067	ENST00000541286		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
intron-intron	ENST00000535067	ENST00000539506		TCGA	LD	BRCA	TCGA-E2-A108-01A	PUS1	chr12	132423820	+	SFSWAP	chr12	132250663	+
Frame-shit	ENST00000334444	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000334444	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000265586	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000265586	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000492216	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000492216	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000427120	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000427120	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000392579	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000392579	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000382494	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000382494	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000446941	ENST00000454872		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000446941	ENST00000473253		TCGA	LD	BRCA	TCGA-E2-A109-01A	ABCC5	chr3	183732052	-	NAALADL2	chr3	174814580	+
In-frame	ENST00000420843	ENST00000294309		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
In-frame	ENST00000420843	ENST00000542467		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
5CDS-3UTR	ENST00000420843	ENST00000442692		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
In-frame	ENST00000393505	ENST00000294309		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
In-frame	ENST00000393505	ENST00000542467		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
5CDS-3UTR	ENST00000393505	ENST00000442692		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
In-frame	ENST00000360025	ENST00000294309		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
In-frame	ENST00000360025	ENST00000542467		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
5CDS-3UTR	ENST00000360025	ENST00000442692		TCGA	LD	BRCA	TCGA-E2-A109-01A	ARRB1	chr11	74994331	-	TPCN2	chr11	68845950	+
In-frame	ENST00000417689	ENST00000366935		TCGA	LD	BRCA	TCGA-E2-A109-01A	CES2	chr16	66972144	+	GPATCH2	chr1	217622679	-
5CDS-intron	ENST00000417689	ENST00000489246		TCGA	LD	BRCA	TCGA-E2-A109-01A	CES2	chr16	66972144	+	GPATCH2	chr1	217622679	-
5CDS-intron	ENST00000417689	ENST00000366934		TCGA	LD	BRCA	TCGA-E2-A109-01A	CES2	chr16	66972144	+	GPATCH2	chr1	217622679	-
In-frame	ENST00000317091	ENST00000366935		TCGA	LD	BRCA	TCGA-E2-A109-01A	CES2	chr16	66972144	+	GPATCH2	chr1	217622679	-
5CDS-intron	ENST00000317091	ENST00000489246		TCGA	LD	BRCA	TCGA-E2-A109-01A	CES2	chr16	66972144	+	GPATCH2	chr1	217622679	-
5CDS-intron	ENST00000317091	ENST00000366934		TCGA	LD	BRCA	TCGA-E2-A109-01A	CES2	chr16	66972144	+	GPATCH2	chr1	217622679	-
intron-3CDS	ENST00000478194	ENST00000312177		TCGA	LD	BRCA	TCGA-E2-A109-01A	FERMT1	chr20	6096458	-	CDRT4	chr17	15341517	-
intron-5UTR	ENST00000478194	ENST00000519354		TCGA	LD	BRCA	TCGA-E2-A109-01A	FERMT1	chr20	6096458	-	CDRT4	chr17	15341517	-
Frame-shit	ENST00000217289	ENST00000312177		TCGA	LD	BRCA	TCGA-E2-A109-01A	FERMT1	chr20	6096458	-	CDRT4	chr17	15341517	-
5CDS-5UTR	ENST00000217289	ENST00000519354		TCGA	LD	BRCA	TCGA-E2-A109-01A	FERMT1	chr20	6096458	-	CDRT4	chr17	15341517	-
5UTR-3CDS	ENST00000536936	ENST00000312177		TCGA	LD	BRCA	TCGA-E2-A109-01A	FERMT1	chr20	6096458	-	CDRT4	chr17	15341517	-
5UTR-5UTR	ENST00000536936	ENST00000519354		TCGA	LD	BRCA	TCGA-E2-A109-01A	FERMT1	chr20	6096458	-	CDRT4	chr17	15341517	-
5CDS-5UTR	ENST00000225972	ENST00000504681		TCGA	LD	BRCA	TCGA-E2-A109-01A	LRRC59	chr17	48469759	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000225972	ENST00000393354		TCGA	LD	BRCA	TCGA-E2-A109-01A	LRRC59	chr17	48469759	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000225972	ENST00000300404		TCGA	LD	BRCA	TCGA-E2-A109-01A	LRRC59	chr17	48469759	-	B4GALNT2	chr17	47218609	+
intron-5UTR	ENST00000576448	ENST00000504681		TCGA	LD	BRCA	TCGA-E2-A109-01A	LRRC59	chr17	48469759	-	B4GALNT2	chr17	47218609	+
intron-5UTR	ENST00000576448	ENST00000393354		TCGA	LD	BRCA	TCGA-E2-A109-01A	LRRC59	chr17	48469759	-	B4GALNT2	chr17	47218609	+
intron-5UTR	ENST00000576448	ENST00000300404		TCGA	LD	BRCA	TCGA-E2-A109-01A	LRRC59	chr17	48469759	-	B4GALNT2	chr17	47218609	+
Frame-shit	ENST00000253925	ENST00000317568		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
5CDS-intron	ENST00000253925	ENST00000531296		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
5CDS-intron	ENST00000253925	ENST00000355991		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
5CDS-intron	ENST00000253925	ENST00000416776		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
Frame-shit	ENST00000389547	ENST00000317568		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
5CDS-intron	ENST00000389547	ENST00000531296		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
5CDS-intron	ENST00000389547	ENST00000355991		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
5CDS-intron	ENST00000389547	ENST00000416776		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
intron-3CDS	ENST00000530548	ENST00000317568		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
intron-intron	ENST00000530548	ENST00000531296		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
intron-intron	ENST00000530548	ENST00000355991		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
intron-intron	ENST00000530548	ENST00000416776		TCGA	LD	BRCA	TCGA-E2-A109-01A	PPFIA1	chr11	70118542	+	FRMD8	chr11	65161044	+
In-frame	ENST00000353383	ENST00000377142		TCGA	LD	BRCA	TCGA-E2-A109-01A	RAI1	chr17	17696516	+	NKX2-2	chr20	21494664	-
intron-3CDS	ENST00000489697	ENST00000377142		TCGA	LD	BRCA	TCGA-E2-A109-01A	RAI1	chr17	17696516	+	NKX2-2	chr20	21494664	-
In-frame	ENST00000261641	ENST00000377142		TCGA	LD	BRCA	TCGA-E2-A109-01A	RAI1	chr17	17696516	+	NKX2-2	chr20	21494664	-
3UTR-3CDS	ENST00000570827	ENST00000520367		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-3CDS	ENST00000570827	ENST00000518137		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-intron	ENST00000570827	ENST00000523999		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-intron	ENST00000570827	ENST00000323854		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-5UTR	ENST00000570827	ENST00000522751		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-5UTR	ENST00000570827	ENST00000520284		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-5UTR	ENST00000570827	ENST00000517795		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-5UTR	ENST00000570827	ENST00000518907		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-intron	ENST00000570827	ENST00000521847		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-intron	ENST00000570827	ENST00000518644		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-5UTR	ENST00000570827	ENST00000518901		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
3UTR-5UTR	ENST00000570827	ENST00000517295		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-3CDS	ENST00000570475	ENST00000520367		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-3CDS	ENST00000570475	ENST00000518137		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-intron	ENST00000570475	ENST00000523999		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-intron	ENST00000570475	ENST00000323854		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-5UTR	ENST00000570475	ENST00000522751		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-5UTR	ENST00000570475	ENST00000520284		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-5UTR	ENST00000570475	ENST00000517795		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-5UTR	ENST00000570475	ENST00000518907		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-intron	ENST00000570475	ENST00000521847		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-intron	ENST00000570475	ENST00000518644		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-5UTR	ENST00000570475	ENST00000518901		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
intron-5UTR	ENST00000570475	ENST00000517295		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
Frame-shit	ENST00000285199	ENST00000520367		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
Frame-shit	ENST00000285199	ENST00000518137		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-intron	ENST00000285199	ENST00000523999		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-intron	ENST00000285199	ENST00000323854		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-5UTR	ENST00000285199	ENST00000522751		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-5UTR	ENST00000285199	ENST00000520284		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-5UTR	ENST00000285199	ENST00000517795		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-5UTR	ENST00000285199	ENST00000518907		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-intron	ENST00000285199	ENST00000521847		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-intron	ENST00000285199	ENST00000518644		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-5UTR	ENST00000285199	ENST00000518901		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
5CDS-5UTR	ENST00000285199	ENST00000517295		TCGA	LD	BRCA	TCGA-E2-A109-01A	USP43	chr17	9605017	+	ENDOV	chr17	78398832	+
Frame-shit	ENST00000356136	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000356136	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000356136	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000356136	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000356136	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
Frame-shit	ENST00000528420	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000528420	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000528420	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000528420	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000528420	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
Frame-shit	ENST00000533454	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000533454	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000533454	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000533454	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000533454	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
Frame-shit	ENST00000531818	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000531818	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000531818	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000531818	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000531818	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
Frame-shit	ENST00000532130	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000532130	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000532130	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000532130	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000532130	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
Frame-shit	ENST00000539288	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000539288	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000539288	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-intron	ENST00000539288	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000539288	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
intron-3CDS	ENST00000525872	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
intron-intron	ENST00000525872	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
intron-intron	ENST00000525872	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
intron-intron	ENST00000525872	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
intron-5UTR	ENST00000525872	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5UTR-3CDS	ENST00000538870	ENST00000356341		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5UTR-intron	ENST00000538870	ENST00000530617		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5UTR-intron	ENST00000538870	ENST00000278568		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5UTR-intron	ENST00000538870	ENST00000528203		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5UTR-5UTR	ENST00000538870	ENST00000525542		TCGA	LD	BRCA	TCGA-E2-A109-01A	UVRAG	chr11	75827059	+	PAK1	chr11	77034405	-
5CDS-5UTR	ENST00000299138	ENST00000568943		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
5CDS-5UTR	ENST00000299138	ENST00000414754		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
5CDS-5UTR	ENST00000299138	ENST00000379906		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
5CDS-5UTR	ENST00000299138	ENST00000561820		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
5CDS-5UTR	ENST00000299138	ENST00000219833		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
5CDS-intron	ENST00000299138	ENST00000566163		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
5CDS-intron	ENST00000299138	ENST00000567238		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-5UTR	ENST00000568642	ENST00000568943		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-5UTR	ENST00000568642	ENST00000414754		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-5UTR	ENST00000568642	ENST00000379906		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-5UTR	ENST00000568642	ENST00000561820		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-5UTR	ENST00000568642	ENST00000219833		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-intron	ENST00000568642	ENST00000566163		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
intron-intron	ENST00000568642	ENST00000567238		TCGA	LD	BRCA	TCGA-E2-A109-01A	VPS35	chr16	46702842	-	SLC6A2	chr16	55690556	+
3UTR-3CDS	ENST00000581865	ENST00000254963		TCGA	LD	BRCA	TCGA-E2-A109-01A	YPEL2	chr17	57409185	+	HSPA12B	chr20	3730616	+
3UTR-3CDS	ENST00000581865	ENST00000542646		TCGA	LD	BRCA	TCGA-E2-A109-01A	YPEL2	chr17	57409185	+	HSPA12B	chr20	3730616	+
5UTR-3CDS	ENST00000312655	ENST00000254963		TCGA	LD	BRCA	TCGA-E2-A109-01A	YPEL2	chr17	57409185	+	HSPA12B	chr20	3730616	+
5UTR-3CDS	ENST00000312655	ENST00000542646		TCGA	LD	BRCA	TCGA-E2-A109-01A	YPEL2	chr17	57409185	+	HSPA12B	chr20	3730616	+
intron-3CDS	ENST00000585166	ENST00000254963		TCGA	LD	BRCA	TCGA-E2-A109-01A	YPEL2	chr17	57409185	+	HSPA12B	chr20	3730616	+
intron-3CDS	ENST00000585166	ENST00000542646		TCGA	LD	BRCA	TCGA-E2-A109-01A	YPEL2	chr17	57409185	+	HSPA12B	chr20	3730616	+
intron-3CDS	ENST00000475338	ENST00000437809		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000475338	ENST00000368331		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000475338	ENST00000271883		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000475338	ENST00000361040		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
intron-5UTR	ENST00000475338	ENST00000471341		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000367595	ENST00000437809		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000367595	ENST00000368331		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000367595	ENST00000271883		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000367595	ENST00000361040		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000367595	ENST00000471341		TCGA	LD	BRCA	TCGA-E2-A10A-01A	ACBD6	chr1	180464596	-	GON4L	chr1	155755165	-
intron-5UTR	ENST00000426496	ENST00000356198		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000426496	ENST00000345664		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000426496	ENST00000367710		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000426496	ENST00000495275		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000392078	ENST00000356198		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000392078	ENST00000345664		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000392078	ENST00000367710		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000392078	ENST00000495275		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000476522	ENST00000356198		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000476522	ENST00000345664		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000476522	ENST00000367710		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
intron-5UTR	ENST00000476522	ENST00000495275		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000367742	ENST00000356198		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000367742	ENST00000345664		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000367742	ENST00000367710		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000367742	ENST00000495275		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000338920	ENST00000356198		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000338920	ENST00000345664		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000338920	ENST00000367710		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
5CDS-5UTR	ENST00000338920	ENST00000495275		TCGA	LD	BRCA	TCGA-E2-A10A-01A	PRRC2C	chr1	171540560	+	CENPL	chr1	173793157	-
In-frame	ENST00000264158	ENST00000263881		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000264158	ENST00000437545		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000264158	ENST00000341681		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000264158	ENST00000484274		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000264158	ENST00000536018		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000264158	ENST00000474502		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000539493	ENST00000263881		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000539493	ENST00000437545		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000539493	ENST00000341681		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000539493	ENST00000484274		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000539493	ENST00000536018		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000539493	ENST00000474502		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000442034	ENST00000263881		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000442034	ENST00000437545		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
In-frame	ENST00000442034	ENST00000341681		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000442034	ENST00000484274		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000442034	ENST00000536018		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
5CDS-intron	ENST00000442034	ENST00000474502		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
3UTR-3CDS	ENST00000487003	ENST00000263881		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
3UTR-3CDS	ENST00000487003	ENST00000437545		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
3UTR-3CDS	ENST00000487003	ENST00000341681		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
3UTR-intron	ENST00000487003	ENST00000484274		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
3UTR-intron	ENST00000487003	ENST00000536018		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
3UTR-intron	ENST00000487003	ENST00000474502		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-3CDS	ENST00000425393	ENST00000263881		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-3CDS	ENST00000425393	ENST00000437545		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-3CDS	ENST00000425393	ENST00000341681		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-intron	ENST00000425393	ENST00000484274		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-intron	ENST00000425393	ENST00000536018		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-intron	ENST00000425393	ENST00000474502		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RAB3GAP1	chr2	135911446	+	MAP4K3	chr2	39499683	-
intron-3CDS	ENST00000367635	ENST00000367602		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RALGPS2	chr1	178746582	+	QSOX1	chr1	180163348	+
intron-3CDS	ENST00000367635	ENST00000367600		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RALGPS2	chr1	178746582	+	QSOX1	chr1	180163348	+
intron-3CDS	ENST00000367634	ENST00000367602		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RALGPS2	chr1	178746582	+	QSOX1	chr1	180163348	+
intron-3CDS	ENST00000367634	ENST00000367600		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RALGPS2	chr1	178746582	+	QSOX1	chr1	180163348	+
intron-3CDS	ENST00000477383	ENST00000367602		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RALGPS2	chr1	178746582	+	QSOX1	chr1	180163348	+
intron-3CDS	ENST00000477383	ENST00000367600		TCGA	LD	BRCA	TCGA-E2-A10A-01A	RALGPS2	chr1	178746582	+	QSOX1	chr1	180163348	+
In-frame	ENST00000342415	ENST00000479054		TCGA	LD	BRCA	TCGA-E2-A10A-01A	SNRNP48	chr6	7595334	+	NISCH	chr3	52518529	+
In-frame	ENST00000342415	ENST00000345716		TCGA	LD	BRCA	TCGA-E2-A10A-01A	SNRNP48	chr6	7595334	+	NISCH	chr3	52518529	+
5CDS-intron	ENST00000342415	ENST00000488380		TCGA	LD	BRCA	TCGA-E2-A10A-01A	SNRNP48	chr6	7595334	+	NISCH	chr3	52518529	+
5CDS-intron	ENST00000342415	ENST00000420808		TCGA	LD	BRCA	TCGA-E2-A10A-01A	SNRNP48	chr6	7595334	+	NISCH	chr3	52518529	+
5CDS-intron	ENST00000342415	ENST00000464280		TCGA	LD	BRCA	TCGA-E2-A10A-01A	SNRNP48	chr6	7595334	+	NISCH	chr3	52518529	+
intron-3CDS	ENST00000538352	ENST00000409709		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000538352	ENST00000409893		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000538352	ENST00000458637		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000538352	ENST00000409619		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
intron-intron	ENST00000538352	ENST00000605744		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000025399	ENST00000409709		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000025399	ENST00000409893		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000025399	ENST00000458637		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000025399	ENST00000409619		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
5CDS-intron	ENST00000025399	ENST00000605744		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000419869	ENST00000409709		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000419869	ENST00000409893		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000419869	ENST00000458637		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
Frame-shit	ENST00000419869	ENST00000409619		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
5CDS-intron	ENST00000419869	ENST00000605744		TCGA	LD	BRCA	TCGA-E2-A10A-01A	STRAP	chr12	16036610	+	MYO7A	chr11	76866953	+
intron-3CDS	ENST00000442339	ENST00000327946		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000442339	ENST00000536331		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000442339	ENST00000552278		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-3CDS	ENST00000409004	ENST00000327946		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000409004	ENST00000536331		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000409004	ENST00000552278		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-3CDS	ENST00000409799	ENST00000327946		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000409799	ENST00000536331		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000409799	ENST00000552278		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-3CDS	ENST00000409445	ENST00000327946		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000409445	ENST00000536331		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000409445	ENST00000552278		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-3CDS	ENST00000393284	ENST00000327946		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000393284	ENST00000536331		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
intron-intron	ENST00000393284	ENST00000552278		TCGA	LD	BRCA	TCGA-E2-A10C-01A	CAPS2	chr12	75784102	-	GRID1	chr10	87966405	-
5UTR-3CDS	ENST00000266604	ENST00000539909		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
5UTR-3CDS	ENST00000266604	ENST00000286621		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
5UTR-3CDS	ENST00000266604	ENST00000372734		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
5UTR-3CDS	ENST00000266604	ENST00000541550		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
5UTR-intron	ENST00000266604	ENST00000467840		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
intron-3CDS	ENST00000446587	ENST00000539909		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
intron-3CDS	ENST00000446587	ENST00000286621		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
intron-3CDS	ENST00000446587	ENST00000372734		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
intron-3CDS	ENST00000446587	ENST00000541550		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
intron-intron	ENST00000446587	ENST00000467840		TCGA	LD	BRCA	TCGA-E2-A10C-01A	LLPH	chr12	66524485	-	ADK	chr10	76349040	+
5UTR-3CDS	ENST00000509108	ENST00000436443		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000509108	ENST00000342788		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000509108	ENST00000402597		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
5UTR-intron	ENST00000509108	ENST00000484474		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
In-frame	ENST00000306193	ENST00000436443		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
In-frame	ENST00000306193	ENST00000342788		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
In-frame	ENST00000306193	ENST00000402597		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
5CDS-intron	ENST00000306193	ENST00000484474		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000504480	ENST00000436443		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000504480	ENST00000342788		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000504480	ENST00000402597		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
intron-intron	ENST00000504480	ENST00000484474		TCGA	LD	BRCA	TCGA-E2-A10E-01A	CBR4	chr4	169923222	-	ERBB4	chr2	212989628	-
3UTR-3CDS	ENST00000461808	ENST00000263202		TCGA	LD	BRCA	TCGA-E2-A14N-01A	BCRP2	chr22	21457515	+	UFD1L	chr22	19445662	-
3UTR-3CDS	ENST00000461808	ENST00000360834		TCGA	LD	BRCA	TCGA-E2-A14N-01A	BCRP2	chr22	21457515	+	UFD1L	chr22	19445662	-
3UTR-3CDS	ENST00000461808	ENST00000399523		TCGA	LD	BRCA	TCGA-E2-A14N-01A	BCRP2	chr22	21457515	+	UFD1L	chr22	19445662	-
3UTR-intron	ENST00000461808	ENST00000484101		TCGA	LD	BRCA	TCGA-E2-A14N-01A	BCRP2	chr22	21457515	+	UFD1L	chr22	19445662	-
In-frame	ENST00000376438	ENST00000263377		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
In-frame	ENST00000376438	ENST00000371835		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
In-frame	ENST00000376438	ENST00000360016		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
5CDS-intron	ENST00000376438	ENST00000602230		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
In-frame	ENST00000304195	ENST00000263377		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
In-frame	ENST00000304195	ENST00000371835		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
In-frame	ENST00000304195	ENST00000360016		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
5CDS-intron	ENST00000304195	ENST00000602230		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000328788	ENST00000263377		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000328788	ENST00000371835		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000328788	ENST00000360016		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-intron	ENST00000328788	ENST00000602230		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000376434	ENST00000263377		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000376434	ENST00000371835		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000376434	ENST00000360016		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-intron	ENST00000376434	ENST00000602230		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000465485	ENST00000263377		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000465485	ENST00000371835		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-3CDS	ENST00000465485	ENST00000360016		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
intron-intron	ENST00000465485	ENST00000602230		TCGA	LD	BRCA	TCGA-E2-A14N-01A	FRMD3	chr9	85987828	-	BRD4	chr19	15365073	-
5CDS-intron	ENST00000398675	ENST00000327791		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000442791		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000534854		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000380790		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000380788		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000541702		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000555248		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000327791		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000442791		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000534854		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000380790		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000380788		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000541702		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000555248		TCGA	LD	BRCA	TCGA-E2-A14N-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
Frame-shit	ENST00000377636	ENST00000406936		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000377636	ENST00000377615		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000377636	ENST00000377619		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
In-frame	ENST00000377636	ENST00000355801		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5CDS-5UTR	ENST00000377636	ENST00000460675		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000431480	ENST00000406936		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000431480	ENST00000377615		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000431480	ENST00000377619		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
In-frame	ENST00000431480	ENST00000355801		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5CDS-5UTR	ENST00000431480	ENST00000460675		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5UTR-3CDS	ENST00000425511	ENST00000406936		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5UTR-3CDS	ENST00000425511	ENST00000377615		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5UTR-3CDS	ENST00000425511	ENST00000377619		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5UTR-3CDS	ENST00000425511	ENST00000355801		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5UTR-5UTR	ENST00000425511	ENST00000460675		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000377625	ENST00000406936		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000377625	ENST00000377615		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
Frame-shit	ENST00000377625	ENST00000377619		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
In-frame	ENST00000377625	ENST00000355801		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5CDS-5UTR	ENST00000377625	ENST00000460675		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
intron-3CDS	ENST00000478591	ENST00000406936		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
intron-3CDS	ENST00000478591	ENST00000377615		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
intron-3CDS	ENST00000478591	ENST00000377619		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
intron-3CDS	ENST00000478591	ENST00000355801		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
intron-5UTR	ENST00000478591	ENST00000460675		TCGA	LD	BRCA	TCGA-E2-A14N-01A	TBC1D4	chr13	76055406	-	COMMD6	chr13	76100775	-
5UTR-3CDS	ENST00000314393	ENST00000370056		TCGA	LD	BRCA	TCGA-E2-A14N-01A	ZHX2	chr8	123875778	+	VAV3	chr1	108185377	-
5UTR-3CDS	ENST00000314393	ENST00000527011		TCGA	LD	BRCA	TCGA-E2-A14N-01A	ZHX2	chr8	123875778	+	VAV3	chr1	108185377	-
5UTR-5UTR	ENST00000314393	ENST00000544443		TCGA	LD	BRCA	TCGA-E2-A14N-01A	ZHX2	chr8	123875778	+	VAV3	chr1	108185377	-
5UTR-5UTR	ENST00000314393	ENST00000415432		TCGA	LD	BRCA	TCGA-E2-A14N-01A	ZHX2	chr8	123875778	+	VAV3	chr1	108185377	-
5UTR-5UTR	ENST00000314393	ENST00000343258		TCGA	LD	BRCA	TCGA-E2-A14N-01A	ZHX2	chr8	123875778	+	VAV3	chr1	108185377	-
5UTR-intron	ENST00000314393	ENST00000371846		TCGA	LD	BRCA	TCGA-E2-A14N-01A	ZHX2	chr8	123875778	+	VAV3	chr1	108185377	-
intron-intron	ENST00000318698	ENST00000590019		TCGA	LD	BRCA	TCGA-E2-A14P-01A	ANKFN1	chr17	54123686	+	LRRC37A16P	chr17	66143664	-
intron-intron	ENST00000566473	ENST00000590019		TCGA	LD	BRCA	TCGA-E2-A14P-01A	ANKFN1	chr17	54123686	+	LRRC37A16P	chr17	66143664	-
intron-intron	ENST00000574292	ENST00000590019		TCGA	LD	BRCA	TCGA-E2-A14P-01A	ANKFN1	chr17	54123686	+	LRRC37A16P	chr17	66143664	-
5UTR-3CDS	ENST00000279249	ENST00000533820		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000279249	ENST00000533129		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000279249	ENST00000524773		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000279249	ENST00000279247		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000279249	ENST00000527469		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000279249	ENST00000527323		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000533419	ENST00000533820		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000533419	ENST00000533129		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000533419	ENST00000524773		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000533419	ENST00000279247		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-intron	ENST00000533419	ENST00000527469		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-intron	ENST00000533419	ENST00000527323		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000544348	ENST00000533820		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000544348	ENST00000533129		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000544348	ENST00000524773		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000544348	ENST00000279247		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-intron	ENST00000544348	ENST00000527469		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
intron-intron	ENST00000544348	ENST00000527323		TCGA	LD	BRCA	TCGA-E2-A14P-01A	CDC42EP2	chr11	65082425	+	CAPN1	chr11	64972154	+
In-frame	ENST00000394126	ENST00000346872		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000394189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000439167		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000535189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000377944		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000377945		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000377952		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000377958		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000346243		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000350532		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000351680		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000467757		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000439016		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394126	ENST00000583368		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
Frame-shit	ENST00000356271	ENST00000346872		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000394189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000439167		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000535189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000377944		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000377945		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000377952		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000377958		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000346243		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000350532		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000351680		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000467757		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000439016		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000356271	ENST00000583368		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
Frame-shit	ENST00000394128	ENST00000346872		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000394189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000439167		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000535189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000377944		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000377945		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000377952		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000377958		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000346243		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000350532		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000351680		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000467757		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000439016		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394128	ENST00000583368		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
Frame-shit	ENST00000394127	ENST00000346872		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000394189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000439167		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000535189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000377944		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000377945		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000377952		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000377958		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000346243		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000350532		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000351680		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000467757		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000439016		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394127	ENST00000583368		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
In-frame	ENST00000501516	ENST00000346872		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000394189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000439167		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000535189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000377944		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000377945		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000377952		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000377958		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000346243		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000350532		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000351680		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000467757		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000439016		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000501516	ENST00000583368		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000479829	ENST00000346872		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000394189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000439167		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000535189		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000377944		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000377945		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000377952		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000377958		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000346243		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000350532		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000351680		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000467757		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000439016		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000479829	ENST00000583368		TCGA	LD	BRCA	TCGA-E2-A14P-01A	MED24	chr17	38176526	-	IKZF3	chr17	37949186	-
intron-intron	ENST00000584396	ENST00000318698		TCGA	LD	BRCA	TCGA-E2-A14P-01A	VEZF1	chr17	56065440	-	ANKFN1	chr17	54123433	+
intron-intron	ENST00000584396	ENST00000566473		TCGA	LD	BRCA	TCGA-E2-A14P-01A	VEZF1	chr17	56065440	-	ANKFN1	chr17	54123433	+
intron-intron	ENST00000584396	ENST00000574292		TCGA	LD	BRCA	TCGA-E2-A14P-01A	VEZF1	chr17	56065440	-	ANKFN1	chr17	54123433	+
5CDS-intron	ENST00000581208	ENST00000318698		TCGA	LD	BRCA	TCGA-E2-A14P-01A	VEZF1	chr17	56065440	-	ANKFN1	chr17	54123433	+
5CDS-intron	ENST00000581208	ENST00000566473		TCGA	LD	BRCA	TCGA-E2-A14P-01A	VEZF1	chr17	56065440	-	ANKFN1	chr17	54123433	+
5CDS-intron	ENST00000581208	ENST00000574292		TCGA	LD	BRCA	TCGA-E2-A14P-01A	VEZF1	chr17	56065440	-	ANKFN1	chr17	54123433	+
In-frame	ENST00000263795	ENST00000300289		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
5CDS-intron	ENST00000263795	ENST00000469684		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
5CDS-intron	ENST00000263795	ENST00000538521		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
In-frame	ENST00000381246	ENST00000300289		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
5CDS-intron	ENST00000381246	ENST00000469684		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
5CDS-intron	ENST00000381246	ENST00000538521		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
intron-3CDS	ENST00000478130	ENST00000300289		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
intron-intron	ENST00000478130	ENST00000469684		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
intron-intron	ENST00000478130	ENST00000538521		TCGA	LD	BRCA	TCGA-E2-A14P-01A	WDR76	chr15	44128414	+	PDIA3	chr15	44046022	+
intron-intron	ENST00000264899	ENST00000309395		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
intron-intron	ENST00000264899	ENST00000396051		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
intron-3UTR	ENST00000264899	ENST00000511449		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
intron-intron	ENST00000325942	ENST00000309395		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
intron-intron	ENST00000325942	ENST00000396051		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
intron-3UTR	ENST00000325942	ENST00000511449		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
5CDS-intron	ENST00000264895	ENST00000309395		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
5CDS-intron	ENST00000264895	ENST00000396051		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
5CDS-3UTR	ENST00000264895	ENST00000511449		TCGA	LD	BRCA	TCGA-E2-A14Q-01A	FRAS1	chr4	79373508	+	MOB1B	chr4	71888084	+
Frame-shit	ENST00000504087	ENST00000348959		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
Frame-shit	ENST00000504087	ENST00000261173		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
Frame-shit	ENST00000504087	ENST00000359142		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
Frame-shit	ENST00000504087	ENST00000428670		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
5CDS-intron	ENST00000504087	ENST00000393164		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
intron-3CDS	ENST00000515641	ENST00000348959		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
intron-3CDS	ENST00000515641	ENST00000261173		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
intron-3CDS	ENST00000515641	ENST00000359142		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
intron-3CDS	ENST00000515641	ENST00000428670		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
intron-intron	ENST00000515641	ENST00000393164		TCGA	LD	BRCA	TCGA-E2-A14R-01A	ANKRD50	chr4	125631155	-	ATP2B1	chr12	90029028	-
5CDS-intron	ENST00000526117	ENST00000487861		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000526117	ENST00000471583		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000526117	ENST00000487270		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000526117	ENST00000488612		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000526117	ENST00000390683		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000526117	ENST00000469165		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000373474	ENST00000487861		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000373474	ENST00000471583		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000373474	ENST00000487270		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000373474	ENST00000488612		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000373474	ENST00000390683		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000373474	ENST00000469165		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000425646	ENST00000487861		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000425646	ENST00000471583		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000425646	ENST00000487270		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000425646	ENST00000488612		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000425646	ENST00000390683		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000425646	ENST00000469165		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000355497	ENST00000487861		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000355497	ENST00000471583		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000355497	ENST00000487270		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000355497	ENST00000488612		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000355497	ENST00000390683		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000355497	ENST00000469165		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000561065	ENST00000487861		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000561065	ENST00000471583		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000561065	ENST00000487270		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000561065	ENST00000488612		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000561065	ENST00000390683		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000561065	ENST00000469165		TCGA	LD	BRCA	TCGA-E2-A14R-01A	LMX1B	chr9	129377848	+	RAD51B	chr14	69149654	+
5CDS-5UTR	ENST00000305997	ENST00000544262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000305997	ENST00000295381		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-5UTR	ENST00000305997	ENST00000409202		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000305997	ENST00000456116		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000305997	ENST00000467265		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000305997	ENST00000409030		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000305997	ENST00000409220		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-3UTR	ENST00000305997	ENST00000497079		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5CDS-intron	ENST00000305997	ENST00000479844		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-5UTR	ENST00000486484	ENST00000544262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-5UTR	ENST00000486484	ENST00000295381		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-5UTR	ENST00000486484	ENST00000409202		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-3UTR	ENST00000486484	ENST00000456116		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-3UTR	ENST00000486484	ENST00000467265		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-3UTR	ENST00000486484	ENST00000409030		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-3UTR	ENST00000486484	ENST00000409220		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-3UTR	ENST00000486484	ENST00000497079		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-intron	ENST00000486484	ENST00000479844		TCGA	LD	BRCA	TCGA-E2-A14R-01A	MBOAT2	chr2	9013238	-	ARHGAP25	chr2	69002353	+
5UTR-3CDS	ENST00000599470	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3UTR	ENST00000599470	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3CDS	ENST00000321944	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3UTR	ENST00000321944	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3CDS	ENST00000358301	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3UTR	ENST00000358301	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
3UTR-3CDS	ENST00000597766	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
3UTR-3UTR	ENST00000597766	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3CDS	ENST00000593690	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3UTR	ENST00000593690	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3CDS	ENST00000599386	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
5UTR-3UTR	ENST00000599386	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
intron-3CDS	ENST00000435673	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
intron-3UTR	ENST00000435673	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
intron-3CDS	ENST00000360442	ENST00000371281		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
intron-3UTR	ENST00000360442	ENST00000371284		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PAK4	chr19	39616559	+	TTC4	chr1	55182273	+
Frame-shit	ENST00000309364	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000359180	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000317589	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000355397	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000429027	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
5UTR-3CDS	ENST00000539256	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000299275	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000538714	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
intron-3CDS	ENST00000543806	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
intron-3CDS	ENST00000424268	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000540972	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
intron-3CDS	ENST00000510738	ENST00000377047		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHA5	chr12	19285384	+	GPC6	chr13	94938603	+
Frame-shit	ENST00000430334	ENST00000390015		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
5CDS-intron	ENST00000430334	ENST00000574376		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
5CDS-intron	ENST00000430334	ENST00000302262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-3CDS	ENST00000580404	ENST00000390015		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000580404	ENST00000574376		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000580404	ENST00000302262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
Frame-shit	ENST00000421073	ENST00000390015		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
5CDS-intron	ENST00000421073	ENST00000574376		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
5CDS-intron	ENST00000421073	ENST00000302262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-3CDS	ENST00000547603	ENST00000390015		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000547603	ENST00000574376		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000547603	ENST00000302262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-3CDS	ENST00000548376	ENST00000390015		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000548376	ENST00000574376		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000548376	ENST00000302262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-3CDS	ENST00000549277	ENST00000390015		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000549277	ENST00000574376		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
intron-intron	ENST00000549277	ENST00000302262		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PLEKHM1	chr17	43552466	-	GAA	chr17	78081356	+
In-frame	ENST00000261336	ENST00000512055		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000261336	ENST00000429747		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000261336	ENST00000512332		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000261336	ENST00000511604		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000261336	ENST00000502818		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
5CDS-intron	ENST00000261336	ENST00000503204		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000381997	ENST00000512055		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000381997	ENST00000429747		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000381997	ENST00000512332		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000381997	ENST00000511604		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
In-frame	ENST00000381997	ENST00000502818		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
5CDS-intron	ENST00000381997	ENST00000503204		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-3CDS	ENST00000539983	ENST00000512055		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-3CDS	ENST00000539983	ENST00000429747		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-3CDS	ENST00000539983	ENST00000512332		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-3CDS	ENST00000539983	ENST00000511604		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-3CDS	ENST00000539983	ENST00000502818		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-intron	ENST00000539983	ENST00000503204		TCGA	LD	BRCA	TCGA-E2-A14R-01A	PZP	chr12	9333579	-	CPNE4	chr3	131442469	-
intron-3CDS	ENST00000487861	ENST00000526117		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487861	ENST00000373474		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487861	ENST00000425646		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487861	ENST00000355497		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487861	ENST00000561065		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000471583	ENST00000526117		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000471583	ENST00000373474		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000471583	ENST00000425646		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000471583	ENST00000355497		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000471583	ENST00000561065		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487270	ENST00000526117		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487270	ENST00000373474		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487270	ENST00000425646		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487270	ENST00000355497		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000487270	ENST00000561065		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000488612	ENST00000526117		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000488612	ENST00000373474		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000488612	ENST00000425646		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000488612	ENST00000355497		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000488612	ENST00000561065		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000390683	ENST00000526117		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000390683	ENST00000373474		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000390683	ENST00000425646		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000390683	ENST00000355497		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000390683	ENST00000561065		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000469165	ENST00000526117		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000469165	ENST00000373474		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000469165	ENST00000425646		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000469165	ENST00000355497		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
intron-3CDS	ENST00000469165	ENST00000561065		TCGA	LD	BRCA	TCGA-E2-A14R-01A	RAD51B	chr14	69012341	+	LMX1B	chr9	129453115	+
In-frame	ENST00000361337	ENST00000261336		TCGA	LD	BRCA	TCGA-E2-A14R-01A	TOP1	chr20	39690130	+	PZP	chr12	9356547	-
5CDS-intron	ENST00000361337	ENST00000381997		TCGA	LD	BRCA	TCGA-E2-A14R-01A	TOP1	chr20	39690130	+	PZP	chr12	9356547	-
5CDS-intron	ENST00000361337	ENST00000539983		TCGA	LD	BRCA	TCGA-E2-A14R-01A	TOP1	chr20	39690130	+	PZP	chr12	9356547	-
Frame-shit	ENST00000264335	ENST00000330676		TCGA	LD	BRCA	TCGA-E2-A14R-01A	YWHAE	chr17	1303341	-	TLCD2	chr17	1612875	-
5UTR-3CDS	ENST00000571732	ENST00000330676		TCGA	LD	BRCA	TCGA-E2-A14R-01A	YWHAE	chr17	1303341	-	TLCD2	chr17	1612875	-
Frame-shit	ENST00000573026	ENST00000330676		TCGA	LD	BRCA	TCGA-E2-A14R-01A	YWHAE	chr17	1303341	-	TLCD2	chr17	1612875	-
Frame-shit	ENST00000575977	ENST00000330676		TCGA	LD	BRCA	TCGA-E2-A14R-01A	YWHAE	chr17	1303341	-	TLCD2	chr17	1612875	-
5UTR-3CDS	ENST00000498643	ENST00000330676		TCGA	LD	BRCA	TCGA-E2-A14R-01A	YWHAE	chr17	1303341	-	TLCD2	chr17	1612875	-
In-frame	ENST00000253925	ENST00000310343		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
In-frame	ENST00000253925	ENST00000524655		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
5CDS-intron	ENST00000253925	ENST00000392657		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
5CDS-intron	ENST00000253925	ENST00000527272		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
In-frame	ENST00000389547	ENST00000310343		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
In-frame	ENST00000389547	ENST00000524655		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
5CDS-intron	ENST00000389547	ENST00000392657		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
5CDS-intron	ENST00000389547	ENST00000527272		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
intron-3CDS	ENST00000530548	ENST00000310343		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
intron-3CDS	ENST00000530548	ENST00000524655		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
intron-intron	ENST00000530548	ENST00000392657		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
intron-intron	ENST00000530548	ENST00000527272		TCGA	LD	BRCA	TCGA-E2-A14S-01A	PPFIA1	chr11	70118542	+	ARHGAP32	chr11	128963602	-
5CDS-3UTR	ENST00000358691	ENST00000592432		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
5CDS-intron	ENST00000358691	ENST00000592014		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
5CDS-intron	ENST00000358691	ENST00000586148		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
5CDS-3UTR	ENST00000580168	ENST00000592432		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
5CDS-intron	ENST00000580168	ENST00000592014		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
5CDS-intron	ENST00000580168	ENST00000586148		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
intron-3UTR	ENST00000580662	ENST00000592432		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
intron-intron	ENST00000580662	ENST00000592014		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
intron-intron	ENST00000580662	ENST00000586148		TCGA	LD	BRCA	TCGA-E2-A14T-01A	HELZ	chr17	65132086	-	PRCD	chr17	74549191	+
In-frame	ENST00000545178	ENST00000340749		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
In-frame	ENST00000545178	ENST00000543909		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
In-frame	ENST00000545178	ENST00000431042		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000545178	ENST00000542505		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000545178	ENST00000396589		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000545178	ENST00000535295		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000545178	ENST00000539924		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000545178	ENST00000542546		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000545178	ENST00000544749		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
In-frame	ENST00000240651	ENST00000340749		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
In-frame	ENST00000240651	ENST00000543909		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
In-frame	ENST00000240651	ENST00000431042		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000240651	ENST00000542505		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000240651	ENST00000396589		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000240651	ENST00000535295		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000240651	ENST00000539924		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000240651	ENST00000542546		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000240651	ENST00000544749		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-3CDS	ENST00000538582	ENST00000340749		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-3CDS	ENST00000538582	ENST00000543909		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-3CDS	ENST00000538582	ENST00000431042		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-intron	ENST00000538582	ENST00000542505		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-intron	ENST00000538582	ENST00000396589		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-5UTR	ENST00000538582	ENST00000535295		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-5UTR	ENST00000538582	ENST00000539924		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-5UTR	ENST00000538582	ENST00000542546		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
5UTR-intron	ENST00000538582	ENST00000544749		TCGA	LD	BRCA	TCGA-E2-A14T-01A	PYROXD1	chr12	21593382	+	SLC2A14	chr12	7985410	-
In-frame	ENST00000251900	ENST00000549190		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
In-frame	ENST00000251900	ENST00000395580		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000337898		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000358314		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000395568		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-intron	ENST00000251900	ENST00000256678		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000449194		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000552761		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000317560		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000251900	ENST00000432191		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-3UTR	ENST00000251900	ENST00000550535		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-3CDS	ENST00000491988	ENST00000549190		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-3CDS	ENST00000491988	ENST00000395580		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000337898		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000358314		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000395568		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-intron	ENST00000491988	ENST00000256678		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000449194		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000552761		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000317560		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-5UTR	ENST00000491988	ENST00000432191		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
intron-3UTR	ENST00000491988	ENST00000550535		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
Frame-shit	ENST00000398048	ENST00000549190		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
Frame-shit	ENST00000398048	ENST00000395580		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000337898		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000358314		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000395568		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-intron	ENST00000398048	ENST00000256678		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000449194		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000552761		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000317560		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-5UTR	ENST00000398048	ENST00000432191		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5CDS-3UTR	ENST00000398048	ENST00000550535		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SCML2	chrX	18278291	-	PPHLN1	chr12	42729685	+
5UTR-3CDS	ENST00000415881	ENST00000344096		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5UTR-intron	ENST00000415881	ENST00000393555		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5UTR-3UTR	ENST00000415881	ENST00000537632		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
In-frame	ENST00000404933	ENST00000344096		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5CDS-intron	ENST00000404933	ENST00000393555		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5CDS-3UTR	ENST00000404933	ENST00000537632		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
In-frame	ENST00000379404	ENST00000344096		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5CDS-intron	ENST00000379404	ENST00000393555		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5CDS-3UTR	ENST00000379404	ENST00000537632		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
3UTR-3CDS	ENST00000478094	ENST00000344096		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
3UTR-intron	ENST00000478094	ENST00000393555		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
3UTR-3UTR	ENST00000478094	ENST00000537632		TCGA	LD	BRCA	TCGA-E2-A14T-01A	SMS	chrX	21958991	+	DYRK2	chr12	68043577	+
5UTR-3CDS	ENST00000337714	ENST00000580974		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000337714	ENST00000299954		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000337714	ENST00000335257		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000337714	ENST00000581322		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000314126	ENST00000580974		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000314126	ENST00000299954		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000314126	ENST00000335257		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
5UTR-3CDS	ENST00000314126	ENST00000581322		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000571629	ENST00000580974		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000571629	ENST00000299954		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000571629	ENST00000335257		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000571629	ENST00000581322		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000572557	ENST00000580974		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000572557	ENST00000299954		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000572557	ENST00000335257		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000572557	ENST00000581322		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000539273	ENST00000580974		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000539273	ENST00000299954		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000539273	ENST00000335257		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
intron-3CDS	ENST00000539273	ENST00000581322		TCGA	LD	BRCA	TCGA-E2-A14V-01A	AKAP1	chr17	55162759	+	PITPNC1	chr17	65574302	+
In-frame	ENST00000253354	ENST00000563480		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
In-frame	ENST00000253354	ENST00000395589		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
In-frame	ENST00000253354	ENST00000316634		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
5CDS-intron	ENST00000253354	ENST00000307979		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
5CDS-intron	ENST00000253354	ENST00000566658		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
intron-3CDS	ENST00000464032	ENST00000563480		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
intron-3CDS	ENST00000464032	ENST00000395589		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
intron-3CDS	ENST00000464032	ENST00000316634		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
intron-intron	ENST00000464032	ENST00000307979		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
intron-intron	ENST00000464032	ENST00000566658		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPIFB1	chr20	31879794	+	SNAPC5	chr15	66787757	-
Frame-shit	ENST00000335221	ENST00000240364		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000335221	ENST00000513602		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000335221	ENST00000514018		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
Frame-shit	ENST00000321892	ENST00000240364		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000321892	ENST00000513602		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000321892	ENST00000514018		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
Frame-shit	ENST00000306378	ENST00000240364		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000306378	ENST00000513602		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000306378	ENST00000514018		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
Frame-shit	ENST00000424123	ENST00000240364		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000424123	ENST00000513602		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000424123	ENST00000514018		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
intron-3CDS	ENST00000577770	ENST00000240364		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
intron-5UTR	ENST00000577770	ENST00000513602		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
intron-5UTR	ENST00000577770	ENST00000514018		TCGA	LD	BRCA	TCGA-E2-A14V-01A	BPTF	chr17	65962772	+	FAM117A	chr17	47797798	-
5CDS-intron	ENST00000302243	ENST00000379977		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000397251		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000397248		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000525219		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000534292		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000528354		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000397250		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000379971		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000530685		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000302243	ENST00000397255		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000379977		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000397251		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000397248		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000525219		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000534292		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000528354		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000397250		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000379971		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000530685		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
intron-intron	ENST00000562509	ENST00000397255		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000379977		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000397251		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000397248		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000525219		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000534292		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000528354		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000397250		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000379971		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000530685		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000417604	ENST00000397255		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000379977		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000397251		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000397248		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000525219		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000534292		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000528354		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000397250		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000379971		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000530685		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
5CDS-intron	ENST00000443119	ENST00000397255		TCGA	LD	BRCA	TCGA-E2-A14V-01A	DDX19A	chr16	70399034	+	IL15RA	chr10	6010891	-
In-frame	ENST00000509603	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000509603	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000509603	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000509603	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000509603	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
5CDS-intron	ENST00000509603	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000319524	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000319524	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000319524	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000319524	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000319524	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
5CDS-intron	ENST00000319524	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000268763	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000268763	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000268763	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000268763	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000268763	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-intron	ENST00000268763	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000398988	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000398988	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000398988	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000398988	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000398988	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-intron	ENST00000398988	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000581975	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000581975	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000581975	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000581975	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000581975	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-intron	ENST00000581975	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000582410	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000582410	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000582410	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000582410	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000582410	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-intron	ENST00000582410	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000578981	ENST00000416426		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000578981	ENST00000284073		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000578981	ENST00000322684		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000578981	ENST00000442934		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000578981	ENST00000579180		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
intron-intron	ENST00000578981	ENST00000579505		TCGA	LD	BRCA	TCGA-E2-A14V-01A	KSR1	chr17	25783900	+	MSI2	chr17	55478740	+
In-frame	ENST00000393119	ENST00000509603		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
In-frame	ENST00000393119	ENST00000319524		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000393119	ENST00000268763		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000393119	ENST00000398988		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000393119	ENST00000581975		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000393119	ENST00000582410		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000393119	ENST00000578981		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
Frame-shit	ENST00000313863	ENST00000509603		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
Frame-shit	ENST00000313863	ENST00000319524		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000313863	ENST00000268763		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000313863	ENST00000398988		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000313863	ENST00000581975		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000313863	ENST00000582410		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000313863	ENST00000578981		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
In-frame	ENST00000337050	ENST00000509603		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
In-frame	ENST00000337050	ENST00000319524		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000337050	ENST00000268763		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000337050	ENST00000398988		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000337050	ENST00000581975		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000337050	ENST00000582410		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000337050	ENST00000578981		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
In-frame	ENST00000537529	ENST00000509603		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
In-frame	ENST00000537529	ENST00000319524		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000537529	ENST00000268763		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000537529	ENST00000398988		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000537529	ENST00000581975		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000537529	ENST00000582410		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5CDS-intron	ENST00000537529	ENST00000578981		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-3CDS	ENST00000546108	ENST00000509603		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-3CDS	ENST00000546108	ENST00000319524		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-5UTR	ENST00000546108	ENST00000268763		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-5UTR	ENST00000546108	ENST00000398988		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-intron	ENST00000546108	ENST00000581975		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-intron	ENST00000546108	ENST00000582410		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
5UTR-intron	ENST00000546108	ENST00000578981		TCGA	LD	BRCA	TCGA-E2-A14V-01A	MKS1	chr17	56294027	-	KSR1	chr17	25904518	+
intron-3CDS	ENST00000332830	ENST00000355303		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000332830	ENST00000398543		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000332830	ENST00000538023		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000332830	ENST00000316296		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000332830	ENST00000530676		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000332830	ENST00000531349		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3UTR	ENST00000332830	ENST00000525494		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000577226	ENST00000355303		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000577226	ENST00000398543		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000577226	ENST00000538023		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000577226	ENST00000316296		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000577226	ENST00000530676		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000577226	ENST00000531349		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3UTR	ENST00000577226	ENST00000525494		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000268756	ENST00000355303		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000268756	ENST00000398543		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000268756	ENST00000538023		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000268756	ENST00000316296		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000268756	ENST00000530676		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000268756	ENST00000531349		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3UTR	ENST00000268756	ENST00000525494		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000582655	ENST00000355303		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000582655	ENST00000398543		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3CDS	ENST00000582655	ENST00000538023		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000582655	ENST00000316296		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000582655	ENST00000530676		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-intron	ENST00000582655	ENST00000531349		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
intron-3UTR	ENST00000582655	ENST00000525494		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27278485	-	ANO1	chr11	70028608	+
In-frame	ENST00000332830	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
In-frame	ENST00000332830	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
5CDS-intron	ENST00000332830	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
In-frame	ENST00000577226	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
In-frame	ENST00000577226	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
5CDS-intron	ENST00000577226	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
In-frame	ENST00000268756	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
In-frame	ENST00000268756	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
5CDS-intron	ENST00000268756	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
intron-3CDS	ENST00000582655	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
intron-3CDS	ENST00000582655	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
intron-intron	ENST00000582655	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PHF12	chr17	27277083	-	CDK12	chr17	37627132	+
5CDS-5UTR	ENST00000305921	ENST00000355938		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58740412	+	ATP5G1	chr17	46970771	+
5CDS-5UTR	ENST00000305921	ENST00000503641		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58740412	+	ATP5G1	chr17	46970771	+
5CDS-5UTR	ENST00000305921	ENST00000514808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58740412	+	ATP5G1	chr17	46970771	+
5CDS-5UTR	ENST00000305921	ENST00000393366		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58740412	+	ATP5G1	chr17	46970771	+
5CDS-5UTR	ENST00000305921	ENST00000506855		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58740412	+	ATP5G1	chr17	46970771	+
5CDS-intron	ENST00000305921	ENST00000513781		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58740412	+	ATP5G1	chr17	46970771	+
In-frame	ENST00000305921	ENST00000393066		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58711338	+	TRIM37	chr17	57060282	-
5CDS-intron	ENST00000305921	ENST00000262294		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58711338	+	TRIM37	chr17	57060282	-
5CDS-intron	ENST00000305921	ENST00000376149		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58711338	+	TRIM37	chr17	57060282	-
5CDS-intron	ENST00000305921	ENST00000393065		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58711338	+	TRIM37	chr17	57060282	-
5CDS-intron	ENST00000305921	ENST00000584889		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PPM1D	chr17	58711338	+	TRIM37	chr17	57060282	-
Frame-shit	ENST00000369110	ENST00000361205		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
Frame-shit	ENST00000369110	ENST00000399848		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
Frame-shit	ENST00000369110	ENST00000359446		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
Frame-shit	ENST00000369110	ENST00000587757		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
5CDS-5UTR	ENST00000369110	ENST00000585931		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
5CDS-5UTR	ENST00000369110	ENST00000586765		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
5CDS-intron	ENST00000369110	ENST00000590308		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
5CDS-intron	ENST00000369110	ENST00000592991		TCGA	LD	BRCA	TCGA-E2-A14V-01A	PREP	chr6	105845728	-	LDLRAD4	chr18	13621116	+
5CDS-5UTR	ENST00000305783	ENST00000541951		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-5UTR	ENST00000305783	ENST00000310571		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-5UTR	ENST00000305783	ENST00000535604		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-5UTR	ENST00000305783	ENST00000536003		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-5UTR	ENST00000305783	ENST00000544552		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-intron	ENST00000305783	ENST00000376384		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-intron	ENST00000305783	ENST00000543079		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5CDS-intron	ENST00000305783	ENST00000544909		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-5UTR	ENST00000442346	ENST00000541951		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-5UTR	ENST00000442346	ENST00000310571		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-5UTR	ENST00000442346	ENST00000535604		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-5UTR	ENST00000442346	ENST00000536003		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-5UTR	ENST00000442346	ENST00000544552		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-intron	ENST00000442346	ENST00000376384		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-intron	ENST00000442346	ENST00000543079		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
5UTR-intron	ENST00000442346	ENST00000544909		TCGA	LD	BRCA	TCGA-E2-A14V-01A	RNFT1	chr17	58041969	-	PAAF1	chr11	73589824	+
In-frame	ENST00000563480	ENST00000375483		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
5CDS-3UTR	ENST00000563480	ENST00000494121		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
In-frame	ENST00000395589	ENST00000375483		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
5CDS-3UTR	ENST00000395589	ENST00000494121		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
In-frame	ENST00000316634	ENST00000375483		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
5CDS-3UTR	ENST00000316634	ENST00000494121		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
In-frame	ENST00000307979	ENST00000375483		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
5CDS-3UTR	ENST00000307979	ENST00000494121		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
intron-3CDS	ENST00000566658	ENST00000375483		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
intron-3UTR	ENST00000566658	ENST00000494121		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNAPC5	chr15	66789980	-	BPIFB4	chr20	31692616	+
5CDS-intron	ENST00000346348	ENST00000244728		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000346348	ENST00000370819		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000346348	ENST00000535941		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000346348	ENST00000370808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-5UTR	ENST00000346348	ENST00000467045		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000314673	ENST00000244728		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000314673	ENST00000370819		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000314673	ENST00000535941		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000314673	ENST00000370808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-5UTR	ENST00000314673	ENST00000467045		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000513865	ENST00000244728		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000513865	ENST00000370819		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000513865	ENST00000535941		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000513865	ENST00000370808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-5UTR	ENST00000513865	ENST00000467045		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000505648	ENST00000244728		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000505648	ENST00000370819		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000505648	ENST00000535941		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000505648	ENST00000370808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-5UTR	ENST00000505648	ENST00000467045		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5UTR-intron	ENST00000508980	ENST00000244728		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5UTR-intron	ENST00000508980	ENST00000370819		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5UTR-intron	ENST00000508980	ENST00000535941		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5UTR-intron	ENST00000508980	ENST00000370808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5UTR-5UTR	ENST00000508980	ENST00000467045		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000369627	ENST00000244728		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000369627	ENST00000370819		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000369627	ENST00000535941		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-intron	ENST00000369627	ENST00000370808		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
5CDS-5UTR	ENST00000369627	ENST00000467045		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SNX14	chr6	86281855	-	COL21A1	chr6	55956381	-
In-frame	ENST00000393328	ENST00000261716		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
Frame-shit	ENST00000393328	ENST00000536202		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
Frame-shit	ENST00000393331	ENST00000261716		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
In-frame	ENST00000393331	ENST00000536202		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
Frame-shit	ENST00000347630	ENST00000261716		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
In-frame	ENST00000347630	ENST00000536202		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
Frame-shit	ENST00000504102	ENST00000261716		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
In-frame	ENST00000504102	ENST00000536202		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
In-frame	ENST00000503676	ENST00000261716		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
Frame-shit	ENST00000503676	ENST00000536202		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
intron-3CDS	ENST00000513080	ENST00000261716		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
intron-3CDS	ENST00000513080	ENST00000536202		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SPOP	chr17	47679227	-	TAOK1	chr17	27869579	+
intron-3CDS	ENST00000269033	ENST00000281038		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000269033	ENST00000528850		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000540801	ENST00000281038		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000540801	ENST00000528850		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
5UTR-3CDS	ENST00000324677	ENST00000281038		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
5UTR-3CDS	ENST00000324677	ENST00000528850		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000582084	ENST00000281038		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000582084	ENST00000528850		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000590153	ENST00000281038		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000590153	ENST00000528850		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000579954	ENST00000281038		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000579954	ENST00000528850		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SSH2	chr17	28088168	-	NARS2	chr11	78154804	-
5UTR-3CDS	ENST00000355238	ENST00000368911		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-5UTR	ENST00000355238	ENST00000323817		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-intron	ENST00000355238	ENST00000413605		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-intron	ENST00000355238	ENST00000497709		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-3CDS	ENST00000369622	ENST00000368911		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-5UTR	ENST00000369622	ENST00000323817		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-intron	ENST00000369622	ENST00000413605		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-intron	ENST00000369622	ENST00000497709		TCGA	LD	BRCA	TCGA-E2-A14V-01A	SYNCRIP	chr6	86352515	-	CDK19	chr6	111067404	-
5UTR-5UTR	ENST00000262291	ENST00000341217		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000581407		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000582266		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000452648		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000582059		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000583953		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000577682		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000583522		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000262291	ENST00000581381		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000341217		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000581407		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000582266		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000452648		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000582059		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000583953		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000577682		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000583522		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000537567	ENST00000581381		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000341217		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000581407		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000582266		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000452648		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000582059		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000583953		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000577682		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000583522		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000539763	ENST00000581381		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000341217		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000581407		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000582266		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000452648		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000582059		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000583953		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000577682		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000583522		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000536180	ENST00000581381		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000341217		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000581407		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000582266		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000452648		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000582059		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000583953		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000577682		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000583522		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
5UTR-5UTR	ENST00000545362	ENST00000581381		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000341217		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000581407		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000582266		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000452648		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000582059		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000583953		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000577682		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000583522		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000588617	ENST00000581381		TCGA	LD	BRCA	TCGA-E2-A14V-01A	VMP1	chr17	57785109	+	FAM222B	chr17	27093725	-
intron-3CDS	ENST00000424843	ENST00000389327		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000424843	ENST00000389328		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000424843	ENST00000438773		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000424843	ENST00000522504		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000276654	ENST00000389327		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000276654	ENST00000389328		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000276654	ENST00000438773		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000276654	ENST00000522504		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000518375	ENST00000389327		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000518375	ENST00000389328		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000518375	ENST00000438773		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000518375	ENST00000522504		TCGA	LD	BRCA	TCGA-E2-A14X-01A	LRP12	chr8	105544135	-	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000370689	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370689	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370689	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370689	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370689	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
5CDS-intron	ENST00000370689	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370685	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370685	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370685	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370685	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370685	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-intron	ENST00000370685	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394838	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394838	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394838	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394838	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394838	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-intron	ENST00000394838	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370682	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370682	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370682	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370682	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370682	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-intron	ENST00000370682	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394839	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394839	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394839	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394839	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000394839	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-intron	ENST00000394839	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370688	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370688	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370688	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370688	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
Frame-shit	ENST00000370688	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
5CDS-intron	ENST00000370688	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000470673	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000470673	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000470673	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000470673	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000470673	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-intron	ENST00000470673	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370680	ENST00000343823		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370680	ENST00000250635		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370680	ENST00000545394		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370680	ENST00000428278		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-3CDS	ENST00000370680	ENST00000521652		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
intron-intron	ENST00000370680	ENST00000524263		TCGA	LD	BRCA	TCGA-E2-A14X-01A	PRKACB	chr1	84544054	+	ASH2L	chr8	37990972	+
In-frame	ENST00000225426	ENST00000225428		TCGA	LD	BRCA	TCGA-E2-A14Y-01A	PSMB3	chr17	36912243	+	CWC25	chr17	36971350	-
In-frame	ENST00000225426	ENST00000536127		TCGA	LD	BRCA	TCGA-E2-A14Y-01A	PSMB3	chr17	36912243	+	CWC25	chr17	36971350	-
5UTR-5UTR	ENST00000345739	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000345739	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000264110	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000264110	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000409635	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000409635	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000392543	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000392543	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000409499	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000409499	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000392544	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000392544	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000426833	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000426833	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000538946	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000538946	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000487334	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000487334	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000409833	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000409833	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000413123	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000413123	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-5UTR	ENST00000409437	ENST00000474063		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5UTR-intron	ENST00000409437	ENST00000423123		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	ATF2	chr2	176015788	-	DIRC3	chr2	218192875	-
5CDS-intron	ENST00000335221	ENST00000525037		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000335221	ENST00000530173		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000335221	ENST00000322157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000335221	ENST00000544660		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000321892	ENST00000525037		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000321892	ENST00000530173		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000321892	ENST00000322157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000321892	ENST00000544660		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000306378	ENST00000525037		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000306378	ENST00000530173		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000306378	ENST00000322157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000306378	ENST00000544660		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000424123	ENST00000525037		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000424123	ENST00000530173		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000424123	ENST00000322157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-intron	ENST00000424123	ENST00000544660		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
intron-intron	ENST00000577770	ENST00000525037		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
intron-intron	ENST00000577770	ENST00000530173		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
intron-intron	ENST00000577770	ENST00000322157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
intron-intron	ENST00000577770	ENST00000544660		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	BPTF	chr17	65850878	+	NPEPPS	chr17	45699134	+
5CDS-5UTR	ENST00000159111	ENST00000596304		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000430157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000596273		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000442744		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000595683		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000595158		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000598780		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000599551		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000597451		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000159111	ENST00000599595		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000596304		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000430157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000596273		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000442744		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000595683		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000595158		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000598780		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000599551		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000597451		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000381759	ENST00000599595		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000596304		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000430157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000596273		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000442744		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000595683		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000595158		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000598780		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000599551		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000597451		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-5UTR	ENST00000536461	ENST00000599595		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000596304		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000430157		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000596273		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000442744		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000595683		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000595158		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000598780		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000599551		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000597451		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000592175	ENST00000599595		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	KDM4B	chr19	5082515	+	UBA52	chr19	18684103	+
5CDS-intron	ENST00000524631	ENST00000513200		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000524631	ENST00000427991		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000524631	ENST00000312498		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000524631	ENST00000329378		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000533099	ENST00000513200		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000533099	ENST00000427991		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000533099	ENST00000312498		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000533099	ENST00000329378		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000423855	ENST00000513200		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000423855	ENST00000427991		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000423855	ENST00000312498		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5CDS-intron	ENST00000423855	ENST00000329378		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	RNPC3	chr1	104068884	+	KIAA0825	chr5	93753085	-
5UTR-3CDS	ENST00000487143	ENST00000283249		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5UTR-intron	ENST00000487143	ENST00000485635		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5UTR-intron	ENST00000487143	ENST00000428609		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5UTR-intron	ENST00000487143	ENST00000409967		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5UTR-intron	ENST00000487143	ENST00000409872		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
In-frame	ENST00000355999	ENST00000283249		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5CDS-intron	ENST00000355999	ENST00000485635		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5CDS-intron	ENST00000355999	ENST00000428609		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5CDS-intron	ENST00000355999	ENST00000409967		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
5CDS-intron	ENST00000355999	ENST00000409872		TCGA	LD	BRCA	TCGA-E2-A14Z-01A	STK39	chr2	168921829	-	ITGB6	chr2	160994710	-
In-frame	ENST00000252699	ENST00000471389		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-5UTR	ENST00000252699	ENST00000394647		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000252699	ENST00000431610		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000252699	ENST00000460382		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000252699	ENST00000463855		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000252699	ENST00000472835		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
In-frame	ENST00000424234	ENST00000471389		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-5UTR	ENST00000424234	ENST00000394647		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000424234	ENST00000431610		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000424234	ENST00000460382		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000424234	ENST00000463855		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000424234	ENST00000472835		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
In-frame	ENST00000390009	ENST00000471389		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-5UTR	ENST00000390009	ENST00000394647		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000390009	ENST00000431610		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000390009	ENST00000460382		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000390009	ENST00000463855		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
5CDS-intron	ENST00000390009	ENST00000472835		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-3CDS	ENST00000497637	ENST00000471389		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-5UTR	ENST00000497637	ENST00000394647		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-intron	ENST00000497637	ENST00000431610		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-intron	ENST00000497637	ENST00000460382		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-intron	ENST00000497637	ENST00000463855		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-intron	ENST00000497637	ENST00000472835		TCGA	LD	BRCA	TCGA-E2-A150-01A	ACTN4	chr19	39138547	+	FTO	chr16	53844052	+
intron-3CDS	ENST00000434074	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000434074	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000434074	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000434074	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000434074	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000434074	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000312040	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000312040	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000312040	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000312040	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000312040	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000312040	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000451945	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000451945	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000451945	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000451945	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000451945	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000451945	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000529655	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000529655	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000529655	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000529655	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000529655	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000529655	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000530500	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000530500	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000530500	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000530500	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000530500	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000530500	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000526508	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000526508	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526508	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526508	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526508	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526508	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000524625	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000524625	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000524625	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000524625	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000524625	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000524625	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000359513	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000359513	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000359513	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000359513	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000359513	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000359513	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000528494	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000528494	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000528494	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000528494	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000528494	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000528494	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000526485	ENST00000256999		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-3CDS	ENST00000526485	ENST00000356696		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526485	ENST00000343844		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526485	ENST00000340334		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526485	ENST00000533034		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
intron-5UTR	ENST00000526485	ENST00000525629		TCGA	LD	BRCA	TCGA-E2-A150-01A	ATG13	chr11	46654009	+	FOLH1	chr11	49197509	-
5UTR-3CDS	ENST00000318407	ENST00000313552		TCGA	LD	BRCA	TCGA-E2-A150-01A	BOK	chr2	242498408	+	ING5	chr2	242644068	+
5UTR-3UTR	ENST00000318407	ENST00000482774		TCGA	LD	BRCA	TCGA-E2-A150-01A	BOK	chr2	242498408	+	ING5	chr2	242644068	+
5UTR-3UTR	ENST00000318407	ENST00000406941		TCGA	LD	BRCA	TCGA-E2-A150-01A	BOK	chr2	242498408	+	ING5	chr2	242644068	+
intron-3CDS	ENST00000319386	ENST00000253381		TCGA	LD	BRCA	TCGA-E2-A150-01A	CCDC129	chr7	31618048	+	DEFB118	chr20	29960660	+
In-frame	ENST00000407970	ENST00000253381		TCGA	LD	BRCA	TCGA-E2-A150-01A	CCDC129	chr7	31618048	+	DEFB118	chr20	29960660	+
intron-3CDS	ENST00000482748	ENST00000253381		TCGA	LD	BRCA	TCGA-E2-A150-01A	CCDC129	chr7	31618048	+	DEFB118	chr20	29960660	+
In-frame	ENST00000451887	ENST00000253381		TCGA	LD	BRCA	TCGA-E2-A150-01A	CCDC129	chr7	31618048	+	DEFB118	chr20	29960660	+
In-frame	ENST00000409210	ENST00000253381		TCGA	LD	BRCA	TCGA-E2-A150-01A	CCDC129	chr7	31618048	+	DEFB118	chr20	29960660	+
Frame-shit	ENST00000540367	ENST00000262134		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
5CDS-intron	ENST00000540367	ENST00000565056		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
In-frame	ENST00000376618	ENST00000262134		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
5CDS-intron	ENST00000376618	ENST00000565056		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
In-frame	ENST00000265641	ENST00000262134		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
5CDS-intron	ENST00000265641	ENST00000565056		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
Frame-shit	ENST00000539743	ENST00000262134		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
5CDS-intron	ENST00000539743	ENST00000565056		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
intron-3CDS	ENST00000537756	ENST00000262134		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
intron-intron	ENST00000537756	ENST00000565056		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
intron-3CDS	ENST00000538994	ENST00000262134		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
intron-intron	ENST00000538994	ENST00000565056		TCGA	LD	BRCA	TCGA-E2-A150-01A	CPT1A	chr11	68529003	-	LPCAT2	chr16	55583189	+
Frame-shit	ENST00000246069	ENST00000275603		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
Frame-shit	ENST00000246069	ENST00000335503		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
Frame-shit	ENST00000246069	ENST00000540286		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
5CDS-intron	ENST00000246069	ENST00000462133		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
5UTR-3CDS	ENST00000474024	ENST00000275603		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
5UTR-3CDS	ENST00000474024	ENST00000335503		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
5UTR-3CDS	ENST00000474024	ENST00000540286		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
5UTR-intron	ENST00000474024	ENST00000462133		TCGA	LD	BRCA	TCGA-E2-A150-01A	DSTN	chr20	17550856	+	CCT6A	chr7	56120115	+
Frame-shit	ENST00000294304	ENST00000311921		TCGA	LD	BRCA	TCGA-E2-A150-01A	LRP5	chr11	68197168	+	ZNF507	chr19	32873373	+
Frame-shit	ENST00000294304	ENST00000544431		TCGA	LD	BRCA	TCGA-E2-A150-01A	LRP5	chr11	68197168	+	ZNF507	chr19	32873373	+
Frame-shit	ENST00000294304	ENST00000355898		TCGA	LD	BRCA	TCGA-E2-A150-01A	LRP5	chr11	68197168	+	ZNF507	chr19	32873373	+
intron-3CDS	ENST00000529481	ENST00000311921		TCGA	LD	BRCA	TCGA-E2-A150-01A	LRP5	chr11	68197168	+	ZNF507	chr19	32873373	+
intron-3CDS	ENST00000529481	ENST00000544431		TCGA	LD	BRCA	TCGA-E2-A150-01A	LRP5	chr11	68197168	+	ZNF507	chr19	32873373	+
intron-3CDS	ENST00000529481	ENST00000355898		TCGA	LD	BRCA	TCGA-E2-A150-01A	LRP5	chr11	68197168	+	ZNF507	chr19	32873373	+
In-frame	ENST00000319217	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000319217	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
In-frame	ENST00000541718	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000541718	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000381022	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000381022	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
intron-3CDS	ENST00000541093	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
intron-intron	ENST00000541093	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
intron-3CDS	ENST00000538841	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
intron-intron	ENST00000538841	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000536827	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000536827	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000447879	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000447879	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000381015	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000381015	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
In-frame	ENST00000546205	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000546205	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
intron-3CDS	ENST00000540202	ENST00000319264		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
intron-intron	ENST00000540202	ENST00000489107		TCGA	LD	BRCA	TCGA-E2-A150-01A	MPDZ	chr9	13247634	-	LURAP1L	chr9	12821385	+
5UTR-intron	ENST00000404241	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000404241	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000404241	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000337304	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000337304	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000337304	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000396680	ENST00000430627		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000396680	ENST00000447079		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-intron	ENST00000396680	ENST00000559545		TCGA	LD	BRCA	TCGA-E2-A152-01A	ATF4	chr22	39916756	+	CDK12	chr17	37700502	+
5UTR-3CDS	ENST00000216029	ENST00000216044		TCGA	LD	BRCA	TCGA-E2-A152-01A	CBY1	chr22	39052755	+	GTPBP1	chr22	39104850	+
5UTR-intron	ENST00000216029	ENST00000460605		TCGA	LD	BRCA	TCGA-E2-A152-01A	CBY1	chr22	39052755	+	GTPBP1	chr22	39104850	+
In-frame	ENST00000264639	ENST00000264659		TCGA	LD	BRCA	TCGA-E2-A152-01A	PSMD3	chr17	38137443	+	SRCIN1	chr17	36716008	-
In-frame	ENST00000264639	ENST00000578925		TCGA	LD	BRCA	TCGA-E2-A152-01A	PSMD3	chr17	38137443	+	SRCIN1	chr17	36716008	-
5CDS-5UTR	ENST00000264639	ENST00000398579		TCGA	LD	BRCA	TCGA-E2-A152-01A	PSMD3	chr17	38137443	+	SRCIN1	chr17	36716008	-
intron-3CDS	ENST00000541736	ENST00000264659		TCGA	LD	BRCA	TCGA-E2-A152-01A	PSMD3	chr17	38137443	+	SRCIN1	chr17	36716008	-
intron-3CDS	ENST00000541736	ENST00000578925		TCGA	LD	BRCA	TCGA-E2-A152-01A	PSMD3	chr17	38137443	+	SRCIN1	chr17	36716008	-
intron-5UTR	ENST00000541736	ENST00000398579		TCGA	LD	BRCA	TCGA-E2-A152-01A	PSMD3	chr17	38137443	+	SRCIN1	chr17	36716008	-
5CDS-intron	ENST00000420843	ENST00000318698		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000420843	ENST00000566473		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-3UTR	ENST00000420843	ENST00000574292		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000393505	ENST00000318698		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000393505	ENST00000566473		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-3UTR	ENST00000393505	ENST00000574292		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000360025	ENST00000318698		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000360025	ENST00000566473		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5CDS-3UTR	ENST00000360025	ENST00000574292		TCGA	LD	BRCA	TCGA-E2-A155-01A	ARRB1	chr11	75062632	-	ANKFN1	chr17	54262110	+
5UTR-3CDS	ENST00000244769	ENST00000368226		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000244769	ENST00000368227		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000244769	ENST00000532331		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000244769	ENST00000368213		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000244769	ENST00000368210		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000244769	ENST00000368215		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000244769	ENST00000368207		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-5UTR	ENST00000244769	ENST00000524481		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-intron	ENST00000244769	ENST00000525459		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000368226		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000368227		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000532331		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000368213		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000368210		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000368215		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000436367	ENST00000368207		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-5UTR	ENST00000436367	ENST00000524481		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-intron	ENST00000436367	ENST00000525459		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000368226		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000368227		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000532331		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000368213		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000368210		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000368215		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-3CDS	ENST00000467008	ENST00000368207		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-5UTR	ENST00000467008	ENST00000524481		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5UTR-intron	ENST00000467008	ENST00000525459		TCGA	LD	BRCA	TCGA-E2-A155-01A	ATXN1	chr6	16753464	-	PTPRK	chr6	128411137	-
5CDS-5UTR	ENST00000458535	ENST00000251849		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-5UTR	ENST00000458535	ENST00000442415		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-intron	ENST00000458535	ENST00000534997		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-5UTR	ENST00000458535	ENST00000542177		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-5UTR	ENST00000307526	ENST00000251849		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-5UTR	ENST00000307526	ENST00000442415		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-intron	ENST00000307526	ENST00000534997		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5CDS-5UTR	ENST00000307526	ENST00000542177		TCGA	LD	BRCA	TCGA-E2-A155-01A	CMTM8	chr3	32280611	+	RAF1	chr3	12660246	-
5UTR-3CDS	ENST00000541730	ENST00000367837		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000527578		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000415177		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000367826		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000367824		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000445176		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000314674		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000367822		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000367820		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5UTR-intron	ENST00000541730	ENST00000525067		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
Frame-shit	ENST00000324607	ENST00000367837		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000527578		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000415177		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000367826		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000367824		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000445176		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000314674		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000367822		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000367820		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000324607	ENST00000525067		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
Frame-shit	ENST00000536798	ENST00000367837		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000527578		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000415177		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000367826		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000367824		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000445176		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000314674		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000367822		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000367820		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000536798	ENST00000525067		TCGA	LD	BRCA	TCGA-E2-A155-01A	MBOAT1	chr6	20212367	-	HBS1L	chr6	135371785	-
5CDS-intron	ENST00000436639	ENST00000369066		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
5CDS-intron	ENST00000436639	ENST00000535438		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
5CDS-intron	ENST00000436639	ENST00000487681		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
intron-intron	ENST00000302071	ENST00000369066		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
intron-intron	ENST00000302071	ENST00000535438		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
intron-intron	ENST00000302071	ENST00000487681		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
intron-intron	ENST00000356644	ENST00000369066		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
intron-intron	ENST00000356644	ENST00000535438		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
intron-intron	ENST00000356644	ENST00000487681		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
5UTR-intron	ENST00000517548	ENST00000369066		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
5UTR-intron	ENST00000517548	ENST00000535438		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
5UTR-intron	ENST00000517548	ENST00000487681		TCGA	LD	BRCA	TCGA-E2-A155-01A	SESN1	chr6	109414998	-	AIM1	chr6	106899569	+
5UTR-3CDS	ENST00000415922	ENST00000521072		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000415922	ENST00000424445		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000415922	ENST00000440797		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-intron	ENST00000415922	ENST00000524031		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000471278	ENST00000521072		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000471278	ENST00000424445		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000471278	ENST00000440797		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
intron-intron	ENST00000471278	ENST00000524031		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000461899	ENST00000521072		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000461899	ENST00000424445		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000461899	ENST00000440797		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5UTR-intron	ENST00000461899	ENST00000524031		TCGA	LD	BRCA	TCGA-E2-A155-01A	ZNF322	chr6	26658786	-	PPIL6	chr6	109714140	-
5CDS-intron	ENST00000348624	ENST00000513942		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000348624	ENST00000344627		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000348624	ENST00000262018		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000348624	ENST00000543315		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000348624	ENST00000451235		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000401897	ENST00000513942		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000401897	ENST00000344627		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000401897	ENST00000262018		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000401897	ENST00000543315		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5CDS-intron	ENST00000401897	ENST00000451235		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
intron-intron	ENST00000490487	ENST00000513942		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
intron-intron	ENST00000490487	ENST00000344627		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
intron-intron	ENST00000490487	ENST00000262018		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
intron-intron	ENST00000490487	ENST00000543315		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
intron-intron	ENST00000490487	ENST00000451235		TCGA	LD	BRCA	TCGA-E2-A156-01A	AP5Z1	chr7	4827283	+	SGCA	chr17	48247527	+
5UTR-intron	ENST00000541908	ENST00000408388		TCGA	LD	BRCA	TCGA-E2-A158-01A	AEBP2	chr12	19557058	+	PVT1	chr8	128951754	+
intron-intron	ENST00000398864	ENST00000408388		TCGA	LD	BRCA	TCGA-E2-A158-01A	AEBP2	chr12	19557058	+	PVT1	chr8	128951754	+
intron-intron	ENST00000266508	ENST00000408388		TCGA	LD	BRCA	TCGA-E2-A158-01A	AEBP2	chr12	19557058	+	PVT1	chr8	128951754	+
intron-intron	ENST00000360995	ENST00000408388		TCGA	LD	BRCA	TCGA-E2-A158-01A	AEBP2	chr12	19557058	+	PVT1	chr8	128951754	+
5UTR-3CDS	ENST00000368346	ENST00000372648		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000368346	ENST00000539497		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000368346	ENST00000466056		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000368346	ENST00000223865		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3CDS	ENST00000392403	ENST00000372648		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000392403	ENST00000539497		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000392403	ENST00000466056		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000392403	ENST00000223865		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3CDS	ENST00000548830	ENST00000372648		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000548830	ENST00000539497		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000548830	ENST00000466056		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000548830	ENST00000223865		TCGA	LD	BRCA	TCGA-E2-A158-01A	ASH1L	chr1	155531944	-	TBC1D13	chr9	131550613	+
intron-3CDS	ENST00000408388	ENST00000541908		TCGA	LD	BRCA	TCGA-E2-A158-01A	PVT1	chr8	128806980	+	AEBP2	chr12	19653031	+
intron-3CDS	ENST00000408388	ENST00000398864		TCGA	LD	BRCA	TCGA-E2-A158-01A	PVT1	chr8	128806980	+	AEBP2	chr12	19653031	+
intron-3CDS	ENST00000408388	ENST00000266508		TCGA	LD	BRCA	TCGA-E2-A158-01A	PVT1	chr8	128806980	+	AEBP2	chr12	19653031	+
intron-3CDS	ENST00000408388	ENST00000360995		TCGA	LD	BRCA	TCGA-E2-A158-01A	PVT1	chr8	128806980	+	AEBP2	chr12	19653031	+
intron-5UTR	ENST00000408388	ENST00000465342		TCGA	LD	BRCA	TCGA-E2-A158-01A	PVT1	chr8	128951922	+	POU5F1B	chr8	128427133	+
intron-intron	ENST00000408388	ENST00000391675		TCGA	LD	BRCA	TCGA-E2-A158-01A	PVT1	chr8	128951922	+	POU5F1B	chr8	128427133	+
intron-3CDS	ENST00000359486	ENST00000602404		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-3CDS	ENST00000359486	ENST00000498737		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-5UTR	ENST00000359486	ENST00000470753		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-3CDS	ENST00000335626	ENST00000602404		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-3CDS	ENST00000335626	ENST00000498737		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-5UTR	ENST00000335626	ENST00000470753		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-3CDS	ENST00000404876	ENST00000602404		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-3CDS	ENST00000404876	ENST00000498737		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-5UTR	ENST00000404876	ENST00000470753		TCGA	LD	BRCA	TCGA-E2-A158-01A	TCF20	chr22	42739485	-	NDUFA6	chr22	42483179	-
intron-5UTR	ENST00000318560	ENST00000303407		TCGA	LD	BRCA	TCGA-E2-A159-01A	ABL1	chr9	133589842	+	BRD3	chr9	136918712	-
intron-intron	ENST00000318560	ENST00000473349		TCGA	LD	BRCA	TCGA-E2-A159-01A	ABL1	chr9	133589842	+	BRD3	chr9	136918712	-
intron-5UTR	ENST00000318560	ENST00000371834		TCGA	LD	BRCA	TCGA-E2-A159-01A	ABL1	chr9	133589842	+	BRD3	chr9	136918712	-
intron-5UTR	ENST00000318560	ENST00000357885		TCGA	LD	BRCA	TCGA-E2-A159-01A	ABL1	chr9	133589842	+	BRD3	chr9	136918712	-
intron-3CDS	ENST00000377126	ENST00000374667		TCGA	LD	BRCA	TCGA-E2-A159-01A	KLF9	chr9	73000464	-	ACTL7B	chr9	111617168	-
intron-3CDS	ENST00000299626	ENST00000285848		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000299626	ENST00000604262		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000299626	ENST00000412791		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000299626	ENST00000358043		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000376156	ENST00000285848		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000376156	ENST00000604262		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000376156	ENST00000412791		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000376156	ENST00000358043		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000532552	ENST00000285848		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000532552	ENST00000604262		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000532552	ENST00000412791		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
intron-3CDS	ENST00000532552	ENST00000358043		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ALG8	chr11	77812139	-	OXA1L	chr14	23237167	+
Frame-shit	ENST00000343823	ENST00000377710		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000343823	ENST00000377709		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-intron	ENST00000343823	ENST00000377704		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000343823	ENST00000467391		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000250635	ENST00000377710		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000250635	ENST00000377709		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-intron	ENST00000250635	ENST00000377704		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000250635	ENST00000467391		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000545394	ENST00000377710		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000545394	ENST00000377709		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-intron	ENST00000545394	ENST00000377704		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000545394	ENST00000467391		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000428278	ENST00000377710		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000428278	ENST00000377709		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-intron	ENST00000428278	ENST00000377704		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000428278	ENST00000467391		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000521652	ENST00000377710		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000521652	ENST00000377709		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-intron	ENST00000521652	ENST00000377704		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000521652	ENST00000467391		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
3UTR-3CDS	ENST00000524263	ENST00000377710		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
3UTR-3CDS	ENST00000524263	ENST00000377709		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
3UTR-intron	ENST00000524263	ENST00000377704		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
3UTR-3UTR	ENST00000524263	ENST00000467391		TCGA	LD	BRCA	TCGA-E2-A15A-01A	ASH2L	chr8	37971805	+	MGME1	chr20	17968809	+
Frame-shit	ENST00000396062	ENST00000413040		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000396062	ENST00000568733		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000396062	ENST00000566856		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000396062	ENST00000355851		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
5CDS-intron	ENST00000396062	ENST00000477666		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000216330	ENST00000413040		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000216330	ENST00000568733		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000216330	ENST00000566856		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000216330	ENST00000355851		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
5CDS-intron	ENST00000216330	ENST00000477666		TCGA	LD	BRCA	TCGA-E2-A15A-01A	FKBP3	chr14	45598997	-	NUB1	chr7	151064025	+
Frame-shit	ENST00000406337	ENST00000347580		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000406337	ENST00000379853		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000406337	ENST00000265708		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000406337	ENST00000521880		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000406337	ENST00000523181		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000265713	ENST00000347580		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000265713	ENST00000379853		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000265713	ENST00000265708		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000265713	ENST00000521880		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000265713	ENST00000523181		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000396930	ENST00000347580		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000396930	ENST00000379853		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000396930	ENST00000265708		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000396930	ENST00000521880		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000396930	ENST00000523181		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000485568	ENST00000347580		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000485568	ENST00000379853		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000485568	ENST00000265708		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000485568	ENST00000521880		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000485568	ENST00000523181		TCGA	LD	BRCA	TCGA-E2-A15A-01A	KAT6A	chr8	41905896	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000281928	ENST00000540693		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000337343		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000379274		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000261491		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
Frame-shit	ENST00000281928	ENST00000536612		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
5CDS-3UTR	ENST00000281928	ENST00000498255		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
5CDS-3UTR	ENST00000281928	ENST00000538674		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000540693		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000337343		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000379274		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000261491		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3CDS	ENST00000551197	ENST00000536612		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3UTR	ENST00000551197	ENST00000498255		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
intron-3UTR	ENST00000551197	ENST00000538674		TCGA	LD	BRCA	TCGA-E2-A15A-01A	MED13L	chr12	116440808	-	DGKH	chr13	42783095	+
5UTR-3CDS	ENST00000393799	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
3UTR-3CDS	ENST00000530427	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000393800	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000534534	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000524845	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000265637	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000524904	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000393801	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000265636	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000529710	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000527403	ENST00000301838		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PPP6R3	chr11	68228295	+	FADD	chr11	70052239	+
In-frame	ENST00000376317	ENST00000376251		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000376317	ENST00000323022		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000376317	ENST00000376265		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
5CDS-intron	ENST00000376317	ENST00000480889		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000536904	ENST00000376251		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000536904	ENST00000323022		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000536904	ENST00000376265		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-intron	ENST00000536904	ENST00000480889		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000540849	ENST00000376251		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000540849	ENST00000323022		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000540849	ENST00000376265		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
5CDS-intron	ENST00000540849	ENST00000480889		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000538114	ENST00000376251		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000538114	ENST00000323022		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000538114	ENST00000376265		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-intron	ENST00000538114	ENST00000480889		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000376310	ENST00000376251		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000376310	ENST00000323022		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
In-frame	ENST00000376310	ENST00000376265		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
5CDS-intron	ENST00000376310	ENST00000480889		TCGA	LD	BRCA	TCGA-E2-A15A-01A	PRICKLE3	chrX	49040187	-	CACNA1F	chrX	49065853	-
intron-3CDS	ENST00000370053	ENST00000217185		TCGA	LD	BRCA	TCGA-E2-A15A-01A	STMN3	chr20	62288703	-	PTK6	chr20	62162280	-
intron-3CDS	ENST00000370053	ENST00000542869		TCGA	LD	BRCA	TCGA-E2-A15A-01A	STMN3	chr20	62288703	-	PTK6	chr20	62162280	-
intron-3CDS	ENST00000540534	ENST00000217185		TCGA	LD	BRCA	TCGA-E2-A15A-01A	STMN3	chr20	62288703	-	PTK6	chr20	62162280	-
intron-3CDS	ENST00000540534	ENST00000542869		TCGA	LD	BRCA	TCGA-E2-A15A-01A	STMN3	chr20	62288703	-	PTK6	chr20	62162280	-
5UTR-3CDS	ENST00000517970	ENST00000285393		TCGA	LD	BRCA	TCGA-E2-A15A-01A	WWP1	chr8	87381260	+	ATP6V0D2	chr8	87151686	+
intron-3CDS	ENST00000349423	ENST00000285393		TCGA	LD	BRCA	TCGA-E2-A15A-01A	WWP1	chr8	87381260	+	ATP6V0D2	chr8	87151686	+
intron-3CDS	ENST00000341922	ENST00000285393		TCGA	LD	BRCA	TCGA-E2-A15A-01A	WWP1	chr8	87381260	+	ATP6V0D2	chr8	87151686	+
intron-3CDS	ENST00000265428	ENST00000285393		TCGA	LD	BRCA	TCGA-E2-A15A-01A	WWP1	chr8	87381260	+	ATP6V0D2	chr8	87151686	+
3UTR-3CDS	ENST00000523863	ENST00000285393		TCGA	LD	BRCA	TCGA-E2-A15A-01A	WWP1	chr8	87381260	+	ATP6V0D2	chr8	87151686	+
Frame-shit	ENST00000413795	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000413795	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000413795	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000369138	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000369138	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000369138	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000421544	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000421544	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000421544	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000358361	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000358361	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000358361	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000318991	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000318991	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000318991	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000369137	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000369137	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000369137	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
intron-3CDS	ENST00000369134	ENST00000368972		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
intron-3CDS	ENST00000369134	ENST00000392644		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
intron-intron	ENST00000369134	ENST00000481850		TCGA	LD	BRCA	TCGA-E2-A15D-01A	GRIK2	chr6	101847268	+	ARMC2	chr6	109274236	+
Frame-shit	ENST00000338110	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000395248	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
intron-3CDS	ENST00000575627	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000566897	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000569545	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000563060	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000412304	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000564546	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000564595	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000569798	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000395240	ENST00000225964		TCGA	LD	BRCA	TCGA-E2-A15E-01A	ALDOA	chr16	30080021	+	COL1A1	chr17	48271808	-
Frame-shit	ENST00000302787	ENST00000382865		TCGA	LD	BRCA	TCGA-E2-A15E-01A	LETM1	chr4	1843074	-	POLN	chr4	2083470	-
Frame-shit	ENST00000302787	ENST00000511885		TCGA	LD	BRCA	TCGA-E2-A15E-01A	LETM1	chr4	1843074	-	POLN	chr4	2083470	-
5CDS-intron	ENST00000302787	ENST00000515357		TCGA	LD	BRCA	TCGA-E2-A15E-01A	LETM1	chr4	1843074	-	POLN	chr4	2083470	-
intron-3CDS	ENST00000512189	ENST00000382865		TCGA	LD	BRCA	TCGA-E2-A15E-01A	LETM1	chr4	1843074	-	POLN	chr4	2083470	-
intron-3CDS	ENST00000512189	ENST00000511885		TCGA	LD	BRCA	TCGA-E2-A15E-01A	LETM1	chr4	1843074	-	POLN	chr4	2083470	-
intron-intron	ENST00000512189	ENST00000515357		TCGA	LD	BRCA	TCGA-E2-A15E-01A	LETM1	chr4	1843074	-	POLN	chr4	2083470	-
In-frame	ENST00000371621	ENST00000371941		TCGA	LD	BRCA	TCGA-E2-A15E-01A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
In-frame	ENST00000371621	ENST00000396220		TCGA	LD	BRCA	TCGA-E2-A15E-01A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
5CDS-intron	ENST00000371621	ENST00000496915		TCGA	LD	BRCA	TCGA-E2-A15E-01A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
In-frame	ENST00000541713	ENST00000371941		TCGA	LD	BRCA	TCGA-E2-A15E-01A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
In-frame	ENST00000541713	ENST00000396220		TCGA	LD	BRCA	TCGA-E2-A15E-01A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
5CDS-intron	ENST00000541713	ENST00000496915		TCGA	LD	BRCA	TCGA-E2-A15E-01A	PTPN1	chr20	49191191	+	PREX1	chr20	47361684	-
Frame-shit	ENST00000361337	ENST00000373184		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
Frame-shit	ENST00000361337	ENST00000373187		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
Frame-shit	ENST00000361337	ENST00000356100		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
Frame-shit	ENST00000361337	ENST00000373190		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
Frame-shit	ENST00000361337	ENST00000373193		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
Frame-shit	ENST00000361337	ENST00000373198		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
Frame-shit	ENST00000361337	ENST00000373201		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
5CDS-intron	ENST00000361337	ENST00000485499		TCGA	LD	BRCA	TCGA-E2-A15F-01A	TOP1	chr20	39658095	+	PTPRT	chr20	40911165	-
5CDS-intron	ENST00000337714	ENST00000397861		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000337714	ENST00000397862		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000337714	ENST00000575658		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000337714	ENST00000487705		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000314126	ENST00000397861		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000314126	ENST00000397862		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000314126	ENST00000575658		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000314126	ENST00000487705		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000571629	ENST00000397861		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000571629	ENST00000397862		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000571629	ENST00000575658		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000571629	ENST00000487705		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000572557	ENST00000397861		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000572557	ENST00000397862		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000572557	ENST00000575658		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000572557	ENST00000487705		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000539273	ENST00000397861		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000539273	ENST00000397862		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000539273	ENST00000575658		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
5CDS-intron	ENST00000539273	ENST00000487705		TCGA	LD	BRCA	TCGA-E2-A15H-01A	AKAP1	chr17	55184539	+	C17orf67	chr17	54893419	-
In-frame	ENST00000223500	ENST00000262291		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000223500	ENST00000537567		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000223500	ENST00000539763		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000223500	ENST00000536180		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000223500	ENST00000545362		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000223500	ENST00000588617		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000419016	ENST00000262291		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000419016	ENST00000537567		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000419016	ENST00000539763		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000419016	ENST00000536180		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
In-frame	ENST00000419016	ENST00000545362		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000419016	ENST00000588617		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000487080	ENST00000262291		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000487080	ENST00000537567		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000487080	ENST00000539763		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000487080	ENST00000536180		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000487080	ENST00000545362		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
intron-intron	ENST00000487080	ENST00000588617		TCGA	LD	BRCA	TCGA-E2-A15H-01A	CHMP5	chr9	33266112	+	VMP1	chr17	57886157	+
Frame-shit	ENST00000240316	ENST00000337231		TCGA	LD	BRCA	TCGA-E2-A15H-01A	COIL	chr17	55038136	-	CDR2L	chr17	72995599	+
5CDS-intron	ENST00000416426	ENST00000494757		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000416426	ENST00000323571		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000416426	ENST00000585043		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000416426	ENST00000394103		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000416426	ENST00000536600		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000416426	ENST00000583130		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000284073	ENST00000494757		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000284073	ENST00000323571		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000284073	ENST00000585043		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000284073	ENST00000394103		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000284073	ENST00000536600		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000284073	ENST00000583130		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000322684	ENST00000494757		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000322684	ENST00000323571		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000322684	ENST00000585043		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000322684	ENST00000394103		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000322684	ENST00000536600		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000322684	ENST00000583130		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000442934	ENST00000494757		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000442934	ENST00000323571		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000442934	ENST00000585043		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000442934	ENST00000394103		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000442934	ENST00000536600		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000442934	ENST00000583130		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000579180	ENST00000494757		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000579180	ENST00000323571		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000579180	ENST00000585043		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000579180	ENST00000394103		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000579180	ENST00000536600		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000579180	ENST00000583130		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
intron-intron	ENST00000579505	ENST00000494757		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000579505	ENST00000323571		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000579505	ENST00000585043		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000579505	ENST00000394103		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000579505	ENST00000536600		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000579505	ENST00000583130		TCGA	LD	BRCA	TCGA-E2-A15H-01A	MSI2	chr17	55478832	+	WIPF2	chr17	38412643	+
In-frame	ENST00000339208	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000339208	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000339208	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000339208	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000346661	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000346661	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000346661	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000346661	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000345615	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000345615	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000345615	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000345615	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000502449	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000502449	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000502449	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000502449	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000591288	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000591288	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000591288	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000591288	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000394378	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000394378	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000394378	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000394378	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000585472	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000585472	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000585472	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
In-frame	ENST00000585472	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
intron-3CDS	ENST00000588194	ENST00000345366		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
intron-3CDS	ENST00000588194	ENST00000336844		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
intron-3CDS	ENST00000588194	ENST00000392886		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
intron-3CDS	ENST00000588194	ENST00000560142		TCGA	LD	BRCA	TCGA-E2-A15H-01A	SYNRG	chr17	35913217	-	CSH2	chr17	61950699	-
5CDS-intron	ENST00000389327	ENST00000341807		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000389327	ENST00000303045		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000389327	ENST00000435777		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000389328	ENST00000341807		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000389328	ENST00000303045		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000389328	ENST00000435777		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000438773	ENST00000341807		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000438773	ENST00000303045		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-intron	ENST00000438773	ENST00000435777		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
intron-intron	ENST00000522504	ENST00000341807		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
intron-intron	ENST00000522504	ENST00000303045		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
intron-intron	ENST00000522504	ENST00000435777		TCGA	LD	BRCA	TCGA-E2-A15H-01A	TRAPPC9	chr8	141370149	-	COL22A1	chr8	139768072	-
5CDS-5UTR	ENST00000521022	ENST00000321613		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000521022	ENST00000454243		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000416984	ENST00000321613		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000416984	ENST00000454243		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000521777	ENST00000321613		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000521777	ENST00000454243		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000397363	ENST00000321613		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
5CDS-5UTR	ENST00000397363	ENST00000454243		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
intron-5UTR	ENST00000521070	ENST00000321613		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
intron-5UTR	ENST00000521070	ENST00000454243		TCGA	LD	BRCA	TCGA-E2-A15K-01A	INTS9	chr8	28692809	-	PHYHIP	chr8	22089516	-
In-frame	ENST00000415149	ENST00000333538		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
5CDS-3UTR	ENST00000415149	ENST00000498380		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
In-frame	ENST00000402543	ENST00000333538		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
5CDS-3UTR	ENST00000402543	ENST00000498380		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
In-frame	ENST00000325805	ENST00000333538		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
5CDS-3UTR	ENST00000325805	ENST00000498380		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
Frame-shit	ENST00000416476	ENST00000333538		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
5CDS-3UTR	ENST00000416476	ENST00000498380		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
In-frame	ENST00000406780	ENST00000333538		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
5CDS-3UTR	ENST00000406780	ENST00000498380		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
intron-3CDS	ENST00000473542	ENST00000333538		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
intron-3UTR	ENST00000473542	ENST00000498380		TCGA	LD	BRCA	TCGA-E2-A15M-01A	BBX	chr3	107517567	+	WBSCR17	chr7	70800536	+
Frame-shit	ENST00000583610	ENST00000339208		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000346661		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000345615		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000502449		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000591288		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000394378		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000583610	ENST00000585472		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000583610	ENST00000588194		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000339208		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000346661		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000345615		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000502449		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000591288		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000394378		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000394294	ENST00000585472		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000394294	ENST00000588194		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000339208		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000346661		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000345615		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000502449		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000591288		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000394378		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000264658	ENST00000585472		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000264658	ENST00000588194		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000339208		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000346661		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000345615		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000502449		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000591288		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000394378		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
Frame-shit	ENST00000577399	ENST00000585472		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
5CDS-5UTR	ENST00000577399	ENST00000588194		TCGA	LD	BRCA	TCGA-E2-A15M-01A	FBXL20	chr17	37453380	-	SYNRG	chr17	35914161	-
3UTR-intron	ENST00000358344	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000358344	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000506339	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000506339	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000355836	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000355836	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000514633	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000514633	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000515193	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000515193	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000506259	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000506259	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000504898	ENST00000253496		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
3UTR-intron	ENST00000504898	ENST00000514943		TCGA	LD	BRCA	TCGA-E2-A15M-01A	HNRNPAB	chr5	177638027	+	F12	chr5	176831971	-
5CDS-intron	ENST00000374232	ENST00000473039		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000374232	ENST00000373624		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000374232	ENST00000542603		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000374232	ENST00000394219		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000374232	ENST00000373620		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000374232	ENST00000394215		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000374232	ENST00000373618		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000473039		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000373624		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000542603		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000394219		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000373620		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000394215		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-intron	ENST00000604751	ENST00000373618		TCGA	LD	BRCA	TCGA-E2-A15M-01A	SNX30	chr9	115580095	+	DENND1A	chr9	126220176	-
intron-3CDS	ENST00000537403	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
intron-3CDS	ENST00000537403	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000307712	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000307712	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
intron-3CDS	ENST00000536508	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
intron-3CDS	ENST00000536508	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000545328	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000545328	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
intron-3CDS	ENST00000553925	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
intron-3CDS	ENST00000553925	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000548032	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000548032	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000557280	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000557280	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000553970	ENST00000261303		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
In-frame	ENST00000553970	ENST00000543772		TCGA	LD	BRCA	TCGA-E2-A15P-01A	SEC23A	chr14	39565102	-	PSMC1	chr14	90738617	+
intron-3CDS	ENST00000322357	ENST00000252674		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZBTB7A	chr19	4055010	-	MLLT1	chr19	6270770	-
intron-intron	ENST00000322357	ENST00000585588		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZBTB7A	chr19	4055010	-	MLLT1	chr19	6270770	-
intron-3CDS	ENST00000601588	ENST00000252674		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZBTB7A	chr19	4055010	-	MLLT1	chr19	6270770	-
intron-intron	ENST00000601588	ENST00000585588		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZBTB7A	chr19	4055010	-	MLLT1	chr19	6270770	-
intron-3CDS	ENST00000558850	ENST00000598205		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000558850	ENST00000376970		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000558850	ENST00000425460		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000558850	ENST00000440075		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000558850	ENST00000601313		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000558850	ENST00000262269		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000558850	ENST00000596571		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000598205		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000376970		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000425460		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000440075		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000601313		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000262269		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000559185	ENST00000596571		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000598205		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000376970		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000425460		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000440075		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000601313		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000262269		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
In-frame	ENST00000442396	ENST00000596571		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000598205		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000376970		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000425460		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000440075		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000601313		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000262269		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
5UTR-3CDS	ENST00000262236	ENST00000596571		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000598205		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000376970		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000425460		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000440075		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000601313		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000262269		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-3CDS	ENST00000420933	ENST00000596571		TCGA	LD	BRCA	TCGA-E2-A15P-01A	ZNF839	chr14	102786390	+	MYH14	chr19	50770134	+
intron-5UTR	ENST00000528089	ENST00000393958		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
intron-5UTR	ENST00000528089	ENST00000393960		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
intron-5UTR	ENST00000528089	ENST00000355677		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
intron-5UTR	ENST00000528089	ENST00000524491		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
intron-intron	ENST00000528089	ENST00000529047		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
intron-intron	ENST00000528089	ENST00000393955		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
intron-intron	ENST00000528089	ENST00000528224		TCGA	LD	BRCA	TCGA-E2-A15R-01A	FAM86C2P	chr11	67572689	-	PC	chr11	66719939	-
In-frame	ENST00000565263	ENST00000453304		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000565263	ENST00000506749		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000565263	ENST00000504962		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000358896	ENST00000453304		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000358896	ENST00000506749		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000358896	ENST00000504962		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000432752	ENST00000453304		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000432752	ENST00000506749		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
In-frame	ENST00000432752	ENST00000504962		TCGA	LD	BRCA	TCGA-E2-A15T-01A	DUS2	chr16	68072052	+	UNC5C	chr4	96171818	-
intron-3CDS	ENST00000519595	ENST00000378204		TCGA	LD	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687564	-	EXT1	chr8	118849440	-
intron-3CDS	ENST00000518642	ENST00000378204		TCGA	LD	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687564	-	EXT1	chr8	118849440	-
intron-3CDS	ENST00000250173	ENST00000378204		TCGA	LD	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687564	-	EXT1	chr8	118849440	-
intron-3CDS	ENST00000520446	ENST00000378204		TCGA	LD	BRCA	TCGA-E2-A15T-01A	LRRC6	chr8	133687564	-	EXT1	chr8	118849440	-
Frame-shit	ENST00000233057	ENST00000234170		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	EIF2AK2	chr2	37347102	-	CEBPZ	chr2	37444180	-
Frame-shit	ENST00000395127	ENST00000234170		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	EIF2AK2	chr2	37347102	-	CEBPZ	chr2	37444180	-
In-frame	ENST00000405334	ENST00000234170		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	EIF2AK2	chr2	37347102	-	CEBPZ	chr2	37444180	-
In-frame	ENST00000396651	ENST00000458657		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
In-frame	ENST00000396651	ENST00000535358		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000396651	ENST00000444751		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
In-frame	ENST00000372209	ENST00000458657		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
In-frame	ENST00000372209	ENST00000535358		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000372209	ENST00000444751		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
3UTR-3CDS	ENST00000485390	ENST00000458657		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
3UTR-3CDS	ENST00000485390	ENST00000535358		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
3UTR-3UTR	ENST00000485390	ENST00000444751		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	RPS8	chr1	45243801	+	C1orf228	chr1	45189794	+
intron-3UTR	ENST00000542191	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
intron-intron	ENST00000542191	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-3UTR	ENST00000261368	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-intron	ENST00000261368	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-3UTR	ENST00000379538	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-intron	ENST00000379538	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-3UTR	ENST00000379533	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-intron	ENST00000379533	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-3UTR	ENST00000379536	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-intron	ENST00000379536	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-3UTR	ENST00000261367	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-intron	ENST00000261367	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-3UTR	ENST00000414317	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
5UTR-intron	ENST00000414317	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
intron-3UTR	ENST00000503116	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
intron-intron	ENST00000503116	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
intron-3UTR	ENST00000504884	ENST00000504881		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
intron-intron	ENST00000504884	ENST00000339397		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121411010	+
intron-5UTR	ENST00000445403	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000445403	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000445403	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000445403	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000445403	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000445403	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
5UTR-5UTR	ENST00000373578	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
5UTR-5UTR	ENST00000373578	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
5UTR-5UTR	ENST00000373578	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
5UTR-5UTR	ENST00000373578	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
5UTR-5UTR	ENST00000373578	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
5UTR-5UTR	ENST00000373578	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000360723	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000360723	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000360723	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000360723	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000360723	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000360723	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000358208	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000358208	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000358208	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000358208	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000358208	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000358208	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373567	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373567	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373567	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373567	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373567	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373567	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373558	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373558	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373558	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373558	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373558	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000373558	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000477066	ENST00000373606		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000477066	ENST00000397156		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000477066	ENST00000397150		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000477066	ENST00000397152		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000477066	ENST00000373605		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
intron-5UTR	ENST00000477066	ENST00000397151		TCGA	LD	BRCA	TCGA-E2-A1AZ-01A	SRC	chr20	35974658	+	MANBAL	chr20	35929611	+
Frame-shit	ENST00000225402	ENST00000353139		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
Frame-shit	ENST00000225402	ENST00000360679		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
Frame-shit	ENST00000225402	ENST00000394406		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
Frame-shit	ENST00000225402	ENST00000335166		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
5CDS-intron	ENST00000225402	ENST00000416895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
5CDS-intron	ENST00000225402	ENST00000361253		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
5CDS-intron	ENST00000225402	ENST00000588142		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
5CDS-intron	ENST00000225402	ENST00000589665		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000590321	ENST00000353139		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000590321	ENST00000360679		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000590321	ENST00000394406		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000590321	ENST00000335166		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-intron	ENST00000590321	ENST00000416895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-intron	ENST00000590321	ENST00000361253		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-intron	ENST00000590321	ENST00000588142		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
intron-intron	ENST00000590321	ENST00000589665		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	AATF	chr17	35378313	+	ACACA	chr17	35454919	-
Frame-shit	ENST00000402744	ENST00000295958		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	CPE	chr4	166300680	+	SMIM14	chr4	39574083	-
Frame-shit	ENST00000402744	ENST00000511809		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	CPE	chr4	166300680	+	SMIM14	chr4	39574083	-
5CDS-5UTR	ENST00000402744	ENST00000510628		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	CPE	chr4	166300680	+	SMIM14	chr4	39574083	-
5CDS-intron	ENST00000276585	ENST00000337198		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000276585	ENST00000347770		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000276585	ENST00000522311		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521434	ENST00000337198		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521434	ENST00000347770		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000521434	ENST00000522311		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000521605	ENST00000337198		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000521605	ENST00000347770		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000521605	ENST00000522311		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5UTR-intron	ENST00000522987	ENST00000337198		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5UTR-intron	ENST00000522987	ENST00000347770		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
5UTR-intron	ENST00000522987	ENST00000522311		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	MRPS28	chr8	80915234	-	AZIN1	chr8	103899375	-
Frame-shit	ENST00000311028	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000311028	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000311028	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000311028	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000311028	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311028	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000311028	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000311028	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000311028	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000395923	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000395923	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000395923	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000395923	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000395923	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000395923	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000395923	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000395923	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000395923	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000220931	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000220931	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000220931	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000220931	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000220931	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000220931	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000220931	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000220931	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000220931	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000521599	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000521599	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000521599	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000521599	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000521599	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000521599	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000521599	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000521599	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000521599	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000522951	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000522951	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000522951	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000522951	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000522951	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000522951	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000522951	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000522951	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000522951	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000519508	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000519508	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000519508	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000519508	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000519508	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000519508	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000519508	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000519508	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000519508	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000521371	ENST00000533895		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000521371	ENST00000424158		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000521371	ENST00000532779		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000521371	ENST00000399066		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000521371	ENST00000446070		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000528331		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000276646		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000528647		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000440310		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000433638		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000408908		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000408889		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000422135		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000419099		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000533065		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000521371	ENST00000533171		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-intron	ENST00000521371	ENST00000529175		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-intron	ENST00000521371	ENST00000529690		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
intron-intron	ENST00000521371	ENST00000527707		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	NCALD	chr8	102731480	-	SYBU	chr8	110631268	-
In-frame	ENST00000319104	ENST00000307602		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000319104	ENST00000524839		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
5UTR-3CDS	ENST00000319073	ENST00000307602		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
5UTR-intron	ENST00000319073	ENST00000524839		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
Frame-shit	ENST00000534961	ENST00000307602		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000534961	ENST00000524839		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
In-frame	ENST00000527424	ENST00000307602		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000527424	ENST00000524839		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
intron-3CDS	ENST00000526349	ENST00000307602		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
intron-intron	ENST00000526349	ENST00000524839		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	RNF170	chr8	42742871	-	HOOK3	chr8	42761316	+
5UTR-3UTR	ENST00000395715	ENST00000304916		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
5UTR-5UTR	ENST00000395715	ENST00000517458		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
5UTR-3UTR	ENST00000220888	ENST00000304916		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
5UTR-5UTR	ENST00000220888	ENST00000517458		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
intron-3UTR	ENST00000519076	ENST00000304916		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
intron-5UTR	ENST00000519076	ENST00000517458		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
intron-3UTR	ENST00000520276	ENST00000304916		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
intron-5UTR	ENST00000520276	ENST00000517458		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
5UTR-3UTR	ENST00000519674	ENST00000304916		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
5UTR-5UTR	ENST00000519674	ENST00000517458		TCGA	LD	BRCA	TCGA-E2-A1B0-01A	TRPS1	chr8	116680772	-	FAM84B	chr8	127565748	-
In-frame	ENST00000374820	ENST00000373184		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
In-frame	ENST00000374820	ENST00000373187		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
In-frame	ENST00000374820	ENST00000356100		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
In-frame	ENST00000374820	ENST00000373190		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
In-frame	ENST00000374820	ENST00000373193		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
In-frame	ENST00000374820	ENST00000373198		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
In-frame	ENST00000374820	ENST00000373201		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
5CDS-intron	ENST00000374820	ENST00000485499		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000373184		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000373187		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000356100		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000373190		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000373193		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000373198		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000452740	ENST00000373201		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
5CDS-intron	ENST00000452740	ENST00000485499		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000373184		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000373187		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000356100		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000373190		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000373193		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000373198		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-3CDS	ENST00000480175	ENST00000373201		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
intron-intron	ENST00000480175	ENST00000485499		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PIGU	chr20	33162908	-	PTPRT	chr20	40911165	-
Frame-shit	ENST00000545225	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000590720	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
3UTR-3CDS	ENST00000541124	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000592578	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000441946	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000293362	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000592169	ENST00000367282		TCGA	LD	BRCA	TCGA-E2-A1B1-01A	PSME3	chr17	40991397	+	GPR37L1	chr1	202096869	+
5CDS-intron	ENST00000495514	ENST00000393923		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000412622		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000431670		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000393925		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000481953		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000495180		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000478922		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000477695		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000495514	ENST00000470699		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000393923		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000412622		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000431670		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000393925		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000481953		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000495180		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000478922		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000477695		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000273395	ENST00000470699		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000393923		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000412622		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000431670		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000393925		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000481953		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000495180		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000478922		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000477695		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-intron	ENST00000355385	ENST00000470699		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000393923		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000412622		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000431670		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000393925		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000481953		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000495180		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000478922		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000477695		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000485230	ENST00000470699		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000393923		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000412622		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000431670		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000393925		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000481953		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000495180		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000478922		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000477695		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000484034	ENST00000470699		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000393923		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000412622		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000431670		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000393925		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000481953		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000495180		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000478922		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000477695		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
intron-intron	ENST00000497495	ENST00000470699		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	BOC	chr3	113003414	+	PHLDB2	chr3	111651116	+
5CDS-5UTR	ENST00000561924	ENST00000396862		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-intron	ENST00000561924	ENST00000268674		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-5UTR	ENST00000561924	ENST00000574598		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-5UTR	ENST00000290858	ENST00000396862		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-intron	ENST00000290858	ENST00000268674		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-5UTR	ENST00000290858	ENST00000574598		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-5UTR	ENST00000412916	ENST00000396862		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-intron	ENST00000412916	ENST00000268674		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-5UTR	ENST00000412916	ENST00000574598		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
intron-5UTR	ENST00000568858	ENST00000396862		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
intron-intron	ENST00000568858	ENST00000268674		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
intron-5UTR	ENST00000568858	ENST00000574598		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	CBFB	chr16	67116211	+	TIGD7	chr16	3352009	-
5CDS-5UTR	ENST00000377403	ENST00000372583		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000377403	ENST00000372584		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000377403	ENST00000247584		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000377403	ENST00000429157		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000377403	ENST00000460604		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-5UTR	ENST00000602477	ENST00000372583		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000602477	ENST00000372584		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000602477	ENST00000247584		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000602477	ENST00000429157		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000602477	ENST00000460604		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000495451	ENST00000372583		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000495451	ENST00000372584		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000495451	ENST00000247584		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000495451	ENST00000429157		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000495451	ENST00000460604		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	H6PD	chr1	9307142	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000334534	ENST00000483074		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SLX4IP	chr20	10438879	+	SUGT1	chr13	53261869	+
5CDS-intron	ENST00000334534	ENST00000343788		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SLX4IP	chr20	10438879	+	SUGT1	chr13	53261869	+
5CDS-intron	ENST00000334534	ENST00000535397		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SLX4IP	chr20	10438879	+	SUGT1	chr13	53261869	+
5CDS-intron	ENST00000334534	ENST00000310528		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SLX4IP	chr20	10438879	+	SUGT1	chr13	53261869	+
Frame-shit	ENST00000265044	ENST00000543418		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000265044	ENST00000392833		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000265044	ENST00000362010		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000265044	ENST00000392832		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000265044	ENST00000469007		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000265044	ENST00000494677		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000265044	ENST00000537559		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000265044	ENST00000468233		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000467789	ENST00000543418		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000467789	ENST00000392833		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000467789	ENST00000362010		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000467789	ENST00000392832		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000467789	ENST00000469007		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000467789	ENST00000494677		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000467789	ENST00000537559		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000467789	ENST00000468233		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000476217	ENST00000543418		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000476217	ENST00000392833		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000476217	ENST00000362010		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000476217	ENST00000392832		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000476217	ENST00000469007		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000476217	ENST00000494677		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000476217	ENST00000537559		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000476217	ENST00000468233		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000478842	ENST00000543418		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000478842	ENST00000392833		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000478842	ENST00000362010		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000478842	ENST00000392832		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000478842	ENST00000469007		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000478842	ENST00000494677		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000478842	ENST00000537559		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000478842	ENST00000468233		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000463503	ENST00000543418		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000463503	ENST00000392833		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000463503	ENST00000362010		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000463503	ENST00000392832		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000463503	ENST00000469007		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000463503	ENST00000494677		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000463503	ENST00000537559		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000463503	ENST00000468233		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000496050	ENST00000543418		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000496050	ENST00000392833		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000496050	ENST00000362010		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000496050	ENST00000392832		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000496050	ENST00000469007		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000496050	ENST00000494677		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000496050	ENST00000537559		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000496050	ENST00000468233		TCGA	LD	BRCA	TCGA-E2-A1B6-01A	SSR3	chr3	156271444	-	VEPH1	chr3	157188318	-
5CDS-3UTR	ENST00000265689	ENST00000399816		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	CHKA	chr11	67888295	-	UBE2QL1	chr5	6492141	+
intron-3UTR	ENST00000533728	ENST00000399816		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	CHKA	chr11	67888295	-	UBE2QL1	chr5	6492141	+
5CDS-3UTR	ENST00000356135	ENST00000399816		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	CHKA	chr11	67888295	-	UBE2QL1	chr5	6492141	+
In-frame	ENST00000503238	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000503238	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000503238	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000503238	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000503238	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000358350	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000358350	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000358350	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000358350	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000358350	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000537810	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000537810	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000537810	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000537810	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000537810	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
5UTR-3CDS	ENST00000264319	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
5UTR-3CDS	ENST00000264319	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
5UTR-3CDS	ENST00000264319	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
5UTR-3CDS	ENST00000264319	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
5UTR-3CDS	ENST00000264319	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000507711	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000507711	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000507711	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000507711	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
In-frame	ENST00000507711	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000514783	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000514783	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000514783	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000514783	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000514783	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000507873	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000507873	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000507873	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000507873	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000507873	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000506685	ENST00000402813		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000506685	ENST00000514170		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000506685	ENST00000358519		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000506685	ENST00000544810		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
intron-3CDS	ENST00000506685	ENST00000420489		TCGA	LD	BRCA	TCGA-E2-A1BC-01A	FRYL	chr4	48611004	-	CNGA1	chr4	47945429	-
5CDS-intron	ENST00000395395	ENST00000416753		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000395395	ENST00000013070		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000340911	ENST00000416753		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000340911	ENST00000013070		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000481550	ENST00000416753		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000481550	ENST00000013070		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000480716	ENST00000416753		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000480716	ENST00000013070		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000375354	ENST00000416753		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
5CDS-intron	ENST00000375354	ENST00000013070		TCGA	LD	BRCA	TCGA-E2-A1BD-01A	ZNF169	chr9	97041127	+	UBR7	chr14	93676170	+
Frame-shit	ENST00000356175	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
Frame-shit	ENST00000358273	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000431387	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1IG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-5UTR	ENST00000349830	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
5CDS-5UTR	ENST00000520359	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
5CDS-5UTR	ENST00000398560	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
5CDS-5UTR	ENST00000518288	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
5CDS-5UTR	ENST00000398564	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
5CDS-5UTR	ENST00000262112	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
intron-5UTR	ENST00000521927	ENST00000297436		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	ARHGEF10	chr8	1817416	+	DEFA6	chr8	6783568	-
intron-3CDS	ENST00000368887	ENST00000326799		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-3CDS	ENST00000368887	ENST00000376016		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-3CDS	ENST00000368887	ENST00000375972		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-5UTR	ENST00000368887	ENST00000463270		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-intron	ENST00000368887	ENST00000477432		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-3CDS	ENST00000405485	ENST00000326799		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-3CDS	ENST00000405485	ENST00000376016		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-3CDS	ENST00000405485	ENST00000375972		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-5UTR	ENST00000405485	ENST00000463270		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-intron	ENST00000405485	ENST00000477432		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
3UTR-3CDS	ENST00000497219	ENST00000326799		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
3UTR-3CDS	ENST00000497219	ENST00000376016		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
3UTR-3CDS	ENST00000497219	ENST00000375972		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
3UTR-5UTR	ENST00000497219	ENST00000463270		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
3UTR-intron	ENST00000497219	ENST00000477432		TCGA	LD	BRCA	TCGA-E2-A1IH-01A	PSTK	chr10	124749923	+	YME1L1	chr10	27420870	-
intron-3CDS	ENST00000263377	ENST00000262982		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000263377	ENST00000542325		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000263377	ENST00000396192		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-intron	ENST00000263377	ENST00000469700		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000371835	ENST00000262982		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000371835	ENST00000542325		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000371835	ENST00000396192		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-intron	ENST00000371835	ENST00000469700		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
5UTR-3CDS	ENST00000360016	ENST00000262982		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
5UTR-3CDS	ENST00000360016	ENST00000542325		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
5UTR-3CDS	ENST00000360016	ENST00000396192		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
5UTR-intron	ENST00000360016	ENST00000469700		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000602230	ENST00000262982		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000602230	ENST00000542325		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-3CDS	ENST00000602230	ENST00000396192		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
intron-intron	ENST00000602230	ENST00000469700		TCGA	LD	BRCA	TCGA-E2-A1II-01A	BRD4	chr19	15443101	-	CSE1L	chr20	47689105	+
In-frame	ENST00000543760	ENST00000391860		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000543760	ENST00000321327		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000543760	ENST00000525115		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
5CDS-intron	ENST00000543760	ENST00000530424		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000366672	ENST00000391860		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000366672	ENST00000321327		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000366672	ENST00000525115		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
5CDS-intron	ENST00000366672	ENST00000530424		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000541865	ENST00000391860		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000541865	ENST00000321327		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
In-frame	ENST00000541865	ENST00000525115		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
5CDS-intron	ENST00000541865	ENST00000530424		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
intron-3CDS	ENST00000485438	ENST00000391860		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
intron-3CDS	ENST00000485438	ENST00000321327		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
intron-3CDS	ENST00000485438	ENST00000525115		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
intron-intron	ENST00000485438	ENST00000530424		TCGA	LD	BRCA	TCGA-E2-A1II-01A	GALNT2	chr1	230379159	+	PGBD5	chr1	230486841	-
5CDS-5UTR	ENST00000275262	ENST00000373824		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000275262	ENST00000263974		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000275262	ENST00000471683		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000392127	ENST00000373824		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000392127	ENST00000263974		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000392127	ENST00000471683		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000453779	ENST00000373824		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000453779	ENST00000263974		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000453779	ENST00000471683		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000361752	ENST00000373824		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000361752	ENST00000263974		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000361752	ENST00000471683		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000361195	ENST00000373824		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000361195	ENST00000263974		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000361195	ENST00000471683		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000424802	ENST00000373824		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-5UTR	ENST00000424802	ENST00000263974		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000424802	ENST00000471683		TCGA	LD	BRCA	TCGA-E2-A1II-01A	QKI	chr6	163836367	+	TAF12	chr1	28948677	-
5CDS-intron	ENST00000312960	ENST00000239944		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
5CDS-intron	ENST00000312960	ENST00000479209		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
5CDS-intron	ENST00000312960	ENST00000487153		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
5CDS-intron	ENST00000312960	ENST00000491660		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000312960	ENST00000490945		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
intron-intron	ENST00000472885	ENST00000239944		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
intron-intron	ENST00000472885	ENST00000479209		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
intron-intron	ENST00000472885	ENST00000487153		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
intron-intron	ENST00000472885	ENST00000491660		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
intron-5UTR	ENST00000472885	ENST00000490945		TCGA	LD	BRCA	TCGA-E2-A1II-01A	SIAH2	chr3	150480220	-	SERP1	chr3	150284893	-
In-frame	ENST00000296411	ENST00000450253		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
In-frame	ENST00000296411	ENST00000280892		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
In-frame	ENST00000296411	ENST00000504432		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
In-frame	ENST00000296411	ENST00000505992		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
5CDS-5UTR	ENST00000296411	ENST00000504472		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000506548	ENST00000450253		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000506548	ENST00000280892		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000506548	ENST00000504432		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000506548	ENST00000505992		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-5UTR	ENST00000506548	ENST00000504472		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000544031	ENST00000450253		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000544031	ENST00000280892		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000544031	ENST00000504432		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-3CDS	ENST00000544031	ENST00000505992		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
intron-5UTR	ENST00000544031	ENST00000504472		TCGA	LD	BRCA	TCGA-E2-A1IL-01A	METAP1	chr4	99917018	+	EIF4E	chr4	99823133	-
In-frame	ENST00000395184	ENST00000264230		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	ARHGAP24	chr4	86643125	+	NOA1	chr4	57840188	-
In-frame	ENST00000503995	ENST00000264230		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	ARHGAP24	chr4	86643125	+	NOA1	chr4	57840188	-
3UTR-3CDS	ENST00000506421	ENST00000264230		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	ARHGAP24	chr4	86643125	+	NOA1	chr4	57840188	-
intron-3CDS	ENST00000395183	ENST00000264230		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	ARHGAP24	chr4	86643125	+	NOA1	chr4	57840188	-
intron-3CDS	ENST00000264343	ENST00000264230		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	ARHGAP24	chr4	86643125	+	NOA1	chr4	57840188	-
intron-3CDS	ENST00000300107	ENST00000204549		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	CLPX	chr15	65458980	-	PDCD7	chr15	65425521	-
intron-3CDS	ENST00000296043	ENST00000254799		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000296043	ENST00000439371		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000296043	ENST00000502323		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000296043	ENST00000545193		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000296043	ENST00000508091		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-3CDS	ENST00000473602	ENST00000254799		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000473602	ENST00000439371		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000473602	ENST00000502323		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000473602	ENST00000545193		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
intron-5UTR	ENST00000473602	ENST00000508091		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	SHROOM3	chr4	77507622	+	GRSF1	chr4	71702031	-
5UTR-3CDS	ENST00000541110	ENST00000435159		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-5UTR	ENST00000541110	ENST00000315208		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-intron	ENST00000541110	ENST00000537538		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-3CDS	ENST00000372917	ENST00000435159		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-5UTR	ENST00000372917	ENST00000315208		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-intron	ENST00000372917	ENST00000537538		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-3CDS	ENST00000372922	ENST00000435159		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-5UTR	ENST00000372922	ENST00000315208		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-intron	ENST00000372922	ENST00000537538		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-3CDS	ENST00000340840	ENST00000435159		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-5UTR	ENST00000340840	ENST00000315208		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-intron	ENST00000340840	ENST00000537538		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-3CDS	ENST00000354325	ENST00000435159		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-5UTR	ENST00000354325	ENST00000315208		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
5UTR-intron	ENST00000354325	ENST00000537538		TCGA	LD	BRCA	TCGA-E2-A1IO-01A	TRERF1	chr6	42418915	-	TMEM132C	chr12	129100697	+
In-frame	ENST00000263671	ENST00000249923		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
In-frame	ENST00000263671	ENST00000439561		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
5CDS-intron	ENST00000263671	ENST00000526191		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
In-frame	ENST00000376332	ENST00000249923		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
In-frame	ENST00000376332	ENST00000439561		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
5CDS-intron	ENST00000376332	ENST00000526191		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
5UTR-3CDS	ENST00000534159	ENST00000249923		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
5UTR-3CDS	ENST00000534159	ENST00000439561		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
5UTR-intron	ENST00000534159	ENST00000526191		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	CHRDL2	chr11	74429765	-	COPB1	chr11	14491109	-
3UTR-3CDS	ENST00000413292	ENST00000398645		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
3UTR-3CDS	ENST00000413292	ENST00000529006		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
3UTR-3UTR	ENST00000413292	ENST00000526258		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
3UTR-intron	ENST00000413292	ENST00000308783		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
3UTR-intron	ENST00000413292	ENST00000530342		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
intron-3CDS	ENST00000164133	ENST00000398645		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
intron-3CDS	ENST00000164133	ENST00000529006		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
intron-3UTR	ENST00000164133	ENST00000526258		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
intron-intron	ENST00000164133	ENST00000308783		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
intron-intron	ENST00000164133	ENST00000530342		TCGA	LD	BRCA	TCGA-E2-A1IU-01A	PPP2R5B	chr11	64685821	+	KDM2A	chr11	66982811	+
5CDS-5UTR	ENST00000414786	ENST00000359337		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-5UTR	ENST00000414786	ENST00000449103		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-intron	ENST00000414786	ENST00000496720		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-5UTR	ENST00000445220	ENST00000359337		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-5UTR	ENST00000445220	ENST00000449103		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-intron	ENST00000445220	ENST00000496720		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-5UTR	ENST00000262795	ENST00000359337		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-5UTR	ENST00000262795	ENST00000449103		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
5CDS-intron	ENST00000262795	ENST00000496720		TCGA	LD	BRCA	TCGA-E2-A1L7-01A	SHANK3	chr22	51160865	+	PLXNB2	chr22	50733207	-
intron-3CDS	ENST00000461263	ENST00000328827		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
intron-intron	ENST00000461263	ENST00000547571		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
Frame-shit	ENST00000315758	ENST00000328827		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
5CDS-intron	ENST00000315758	ENST00000547571		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
Frame-shit	ENST00000443006	ENST00000328827		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
5CDS-intron	ENST00000443006	ENST00000547571		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
intron-3CDS	ENST00000490105	ENST00000328827		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
intron-intron	ENST00000490105	ENST00000547571		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
intron-3CDS	ENST00000432020	ENST00000328827		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
intron-intron	ENST00000432020	ENST00000547571		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	MDH2	chr7	75689816	+	PAWR	chr12	79990438	-
5CDS-intron	ENST00000248600	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000248600	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000248600	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000248600	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000359697	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000359697	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000359697	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000359697	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000340062	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000340062	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000340062	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000340062	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000360591	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000360591	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000360591	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000360591	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000431581	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000431581	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000431581	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000431581	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000451157	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000451157	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000451157	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000451157	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000460184	ENST00000508736		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000460184	ENST00000548825		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000460184	ENST00000261897		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
intron-intron	ENST00000460184	ENST00000380281		TCGA	LD	BRCA	TCGA-E2-A1L8-01A	STYXL1	chr7	75643060	-	PRPF40B	chr12	49977345	+
5UTR-3CDS	ENST00000237500	ENST00000158762		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
5UTR-intron	ENST00000237500	ENST00000573893		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
5UTR-intron	ENST00000237500	ENST00000571471		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
5UTR-intron	ENST00000237500	ENST00000570504		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
5UTR-intron	ENST00000237500	ENST00000574499		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
5UTR-intron	ENST00000237500	ENST00000575415		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-3CDS	ENST00000581193	ENST00000158762		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000581193	ENST00000573893		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000581193	ENST00000571471		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000581193	ENST00000570504		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000581193	ENST00000574499		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000581193	ENST00000575415		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-3CDS	ENST00000400175	ENST00000158762		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000400175	ENST00000573893		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000400175	ENST00000571471		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000400175	ENST00000570504		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000400175	ENST00000574499		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000400175	ENST00000575415		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-3CDS	ENST00000584539	ENST00000158762		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000584539	ENST00000573893		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000584539	ENST00000571471		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000584539	ENST00000570504		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000584539	ENST00000574499		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
intron-intron	ENST00000584539	ENST00000575415		TCGA	LD	BRCA	TCGA-E2-A1L9-01A	MYL12B	chr18	3262235	+	ACAP1	chr17	7245267	+
Frame-shit	ENST00000502492	ENST00000301039		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
Frame-shit	ENST00000502492	ENST00000439862		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
5CDS-intron	ENST00000502492	ENST00000581289		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
5CDS-5UTR	ENST00000502492	ENST00000579650		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
Frame-shit	ENST00000290330	ENST00000301039		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
Frame-shit	ENST00000290330	ENST00000439862		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
5CDS-intron	ENST00000290330	ENST00000581289		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
5CDS-5UTR	ENST00000290330	ENST00000579650		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
intron-3CDS	ENST00000514089	ENST00000301039		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
intron-3CDS	ENST00000514089	ENST00000439862		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
intron-intron	ENST00000514089	ENST00000581289		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
intron-5UTR	ENST00000514089	ENST00000579650		TCGA	LD	BRCA	TCGA-E2-A1LB-01A	SNF8	chr17	47021287	-	PROCA1	chr17	27031861	-
In-frame	ENST00000265343	ENST00000265342		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132224771	-	FSTL4	chr5	132561511	-
5CDS-5UTR	ENST00000265343	ENST00000507112		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132224771	-	FSTL4	chr5	132561511	-
intron-3CDS	ENST00000378595	ENST00000265342		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132224771	-	FSTL4	chr5	132561511	-
intron-5UTR	ENST00000378595	ENST00000507112		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132224771	-	FSTL4	chr5	132561511	-
intron-3CDS	ENST00000491831	ENST00000265342		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132224771	-	FSTL4	chr5	132561511	-
intron-5UTR	ENST00000491831	ENST00000507112		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	AFF4	chr5	132224771	-	FSTL4	chr5	132561511	-
intron-3CDS	ENST00000515408	ENST00000505459		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
intron-3UTR	ENST00000515408	ENST00000282999		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
intron-3UTR	ENST00000515408	ENST00000515463		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
Frame-shit	ENST00000389063	ENST00000505459		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
5CDS-3UTR	ENST00000389063	ENST00000282999		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
5CDS-3UTR	ENST00000389063	ENST00000515463		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
Frame-shit	ENST00000543319	ENST00000505459		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
5CDS-3UTR	ENST00000543319	ENST00000282999		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
5CDS-3UTR	ENST00000543319	ENST00000515463		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
intron-3CDS	ENST00000504961	ENST00000505459		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
intron-3UTR	ENST00000504961	ENST00000282999		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
intron-3UTR	ENST00000504961	ENST00000515463		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	DCP2	chr5	112343739	+	SRP19	chr5	112203101	+
In-frame	ENST00000287667	ENST00000396324		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
In-frame	ENST00000287667	ENST00000452625		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
In-frame	ENST00000287667	ENST00000576790		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
In-frame	ENST00000287667	ENST00000300036		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
5CDS-intron	ENST00000287667	ENST00000573908		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
intron-3CDS	ENST00000566883	ENST00000396324		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
intron-3CDS	ENST00000566883	ENST00000452625		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
intron-3CDS	ENST00000566883	ENST00000576790		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
intron-3CDS	ENST00000566883	ENST00000300036		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
intron-intron	ENST00000566883	ENST00000573908		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	NOMO1	chr16	14983072	+	MYH11	chr16	15917268	-
Frame-shit	ENST00000210313	ENST00000223642		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PSMD5	chr9	123586772	-	C5	chr9	123789552	-
5CDS-intron	ENST00000210313	ENST00000466280		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PSMD5	chr9	123586772	-	C5	chr9	123789552	-
Frame-shit	ENST00000373904	ENST00000223642		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PSMD5	chr9	123586772	-	C5	chr9	123789552	-
5CDS-intron	ENST00000373904	ENST00000466280		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PSMD5	chr9	123586772	-	C5	chr9	123789552	-
intron-3CDS	ENST00000604848	ENST00000223642		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PSMD5	chr9	123586772	-	C5	chr9	123789552	-
intron-intron	ENST00000604848	ENST00000466280		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PSMD5	chr9	123586772	-	C5	chr9	123789552	-
5UTR-3CDS	ENST00000356362	ENST00000480514		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-3CDS	ENST00000356362	ENST00000485614		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-3CDS	ENST00000356362	ENST00000486180		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-5UTR	ENST00000356362	ENST00000490493		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-intron	ENST00000356362	ENST00000460135		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-3CDS	ENST00000469408	ENST00000480514		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-3CDS	ENST00000469408	ENST00000485614		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-3CDS	ENST00000469408	ENST00000486180		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-5UTR	ENST00000469408	ENST00000490493		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
5UTR-intron	ENST00000469408	ENST00000460135		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	PUS7	chr7	105162499	-	EFCAB10	chr7	105210018	-
3UTR-3CDS	ENST00000487305	ENST00000327300		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
3UTR-3UTR	ENST00000487305	ENST00000307714		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
3UTR-3UTR	ENST00000487305	ENST00000492989		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
Frame-shit	ENST00000336294	ENST00000327300		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000336294	ENST00000307714		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000336294	ENST00000492989		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000456834	ENST00000327300		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000456834	ENST00000307714		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000456834	ENST00000492989		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000373634	ENST00000327300		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000373634	ENST00000307714		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000373634	ENST00000492989		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
Frame-shit	ENST00000427288	ENST00000327300		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000427288	ENST00000307714		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000427288	ENST00000492989		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TMEM39B	chr1	32542919	+	KHDRBS1	chr1	32495899	+
3UTR-3CDS	ENST00000476901	ENST00000381031		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
3UTR-3CDS	ENST00000476901	ENST00000445282		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
intron-3CDS	ENST00000290846	ENST00000381031		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
intron-3CDS	ENST00000290846	ENST00000445282		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
intron-3CDS	ENST00000381019	ENST00000381031		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
intron-3CDS	ENST00000381019	ENST00000445282		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
intron-3CDS	ENST00000424260	ENST00000381031		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
intron-3CDS	ENST00000424260	ENST00000445282		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TRMU	chr22	46727629	+	TTC38	chr22	46668232	+
Frame-shit	ENST00000402414	ENST00000281405		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TTC32	chr2	20101467	-	WDR35	chr2	20136126	-
Frame-shit	ENST00000402414	ENST00000345530		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TTC32	chr2	20101467	-	WDR35	chr2	20136126	-
Frame-shit	ENST00000402414	ENST00000416055		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TTC32	chr2	20101467	-	WDR35	chr2	20136126	-
Frame-shit	ENST00000333610	ENST00000281405		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TTC32	chr2	20101467	-	WDR35	chr2	20136126	-
Frame-shit	ENST00000333610	ENST00000345530		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TTC32	chr2	20101467	-	WDR35	chr2	20136126	-
Frame-shit	ENST00000333610	ENST00000416055		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	TTC32	chr2	20101467	-	WDR35	chr2	20136126	-
3UTR-3CDS	ENST00000459775	ENST00000409013		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
3UTR-3CDS	ENST00000459775	ENST00000409890		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
3UTR-3UTR	ENST00000459775	ENST00000490508		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
3UTR-3UTR	ENST00000459775	ENST00000409344		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
3UTR-3UTR	ENST00000459775	ENST00000428955		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
3UTR-3UTR	ENST00000459775	ENST00000393852		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
3UTR-3UTR	ENST00000459775	ENST00000315658		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3CDS	ENST00000450066	ENST00000409013		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3CDS	ENST00000450066	ENST00000409890		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3UTR	ENST00000450066	ENST00000490508		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3UTR	ENST00000450066	ENST00000409344		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3UTR	ENST00000450066	ENST00000428955		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3UTR	ENST00000450066	ENST00000393852		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
intron-3UTR	ENST00000450066	ENST00000315658		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000409025	ENST00000409013		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000409025	ENST00000409890		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409025	ENST00000490508		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409025	ENST00000409344		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409025	ENST00000428955		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409025	ENST00000393852		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409025	ENST00000315658		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000409470	ENST00000409013		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000409470	ENST00000409890		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409470	ENST00000490508		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409470	ENST00000409344		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409470	ENST00000428955		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409470	ENST00000393852		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409470	ENST00000315658		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000323701	ENST00000409013		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000323701	ENST00000409890		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000323701	ENST00000490508		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000323701	ENST00000409344		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000323701	ENST00000428955		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000323701	ENST00000393852		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000323701	ENST00000315658		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000409766	ENST00000409013		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
In-frame	ENST00000409766	ENST00000409890		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409766	ENST00000490508		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409766	ENST00000409344		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409766	ENST00000428955		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409766	ENST00000393852		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5CDS-3UTR	ENST00000409766	ENST00000315658		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	USP39	chr2	85848702	+	ELMOD3	chr2	85604467	+
5UTR-3CDS	ENST00000269394	ENST00000576599		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNF750	chr17	80797803	-	B3GNTL1	chr17	80923622	-
5UTR-3CDS	ENST00000269394	ENST00000320865		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNF750	chr17	80797803	-	B3GNTL1	chr17	80923622	-
5UTR-5UTR	ENST00000269394	ENST00000571954		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNF750	chr17	80797803	-	B3GNTL1	chr17	80923622	-
5UTR-3CDS	ENST00000572562	ENST00000576599		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNF750	chr17	80797803	-	B3GNTL1	chr17	80923622	-
5UTR-3CDS	ENST00000572562	ENST00000320865		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNF750	chr17	80797803	-	B3GNTL1	chr17	80923622	-
5UTR-5UTR	ENST00000572562	ENST00000571954		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNF750	chr17	80797803	-	B3GNTL1	chr17	80923622	-
In-frame	ENST00000305105	ENST00000580825		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000305105	ENST00000254079		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000305105	ENST00000579000		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000305105	ENST00000394265		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000305105	ENST00000394267		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
3UTR-3CDS	ENST00000492315	ENST00000580825		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
3UTR-3CDS	ENST00000492315	ENST00000254079		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
3UTR-3CDS	ENST00000492315	ENST00000579000		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
3UTR-3CDS	ENST00000492315	ENST00000394265		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
3UTR-3CDS	ENST00000492315	ENST00000394267		TCGA	LD	BRCA	TCGA-E2-A1LE-01A	ZNHIT1	chr7	100861498	+	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000303004	ENST00000488476		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	CEBPB	chr20	48808535	+	IGHJ5	chr14	106330069	-
Frame-shit	ENST00000398174	ENST00000220763		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
5CDS-intron	ENST00000398174	ENST00000529551		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
Frame-shit	ENST00000340852	ENST00000220763		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
5CDS-intron	ENST00000340852	ENST00000529551		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
Frame-shit	ENST00000335574	ENST00000220763		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
5CDS-intron	ENST00000335574	ENST00000529551		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
Frame-shit	ENST00000376127	ENST00000220763		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
5CDS-intron	ENST00000376127	ENST00000529551		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
intron-3CDS	ENST00000492709	ENST00000220763		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
intron-intron	ENST00000492709	ENST00000529551		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	HM13	chr20	30102537	+	CPQ	chr8	97847201	+
intron-3UTR	ENST00000390237	ENST00000404338		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	IGKC	chr2	89156805	-	ARHGAP35	chr19	47507263	+
intron-intron	ENST00000390237	ENST00000598548		TCGA	LD	BRCA	TCGA-E2-A1LH-01A	IGKC	chr2	89156805	-	ARHGAP35	chr19	47507263	+
Frame-shit	ENST00000350026	ENST00000368416		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
In-frame	ENST00000350026	ENST00000368417		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000350026	ENST00000546092		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000350026	ENST00000545433		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000350026	ENST00000476571		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
Frame-shit	ENST00000346085	ENST00000368416		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
In-frame	ENST00000346085	ENST00000368417		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000346085	ENST00000546092		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000346085	ENST00000545433		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000346085	ENST00000476571		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
Frame-shit	ENST00000367148	ENST00000368416		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
In-frame	ENST00000367148	ENST00000368417		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000367148	ENST00000546092		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000367148	ENST00000545433		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000367148	ENST00000476571		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
Frame-shit	ENST00000275248	ENST00000368416		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
In-frame	ENST00000275248	ENST00000368417		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000275248	ENST00000546092		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000275248	ENST00000545433		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
5CDS-intron	ENST00000275248	ENST00000476571		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
intron-3CDS	ENST00000478761	ENST00000368416		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
intron-3CDS	ENST00000478761	ENST00000368417		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
intron-intron	ENST00000478761	ENST00000546092		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
intron-intron	ENST00000478761	ENST00000545433		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
intron-intron	ENST00000478761	ENST00000476571		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	ARID1B	chr6	157256710	+	NKAIN2	chr6	124979332	+
Frame-shit	ENST00000379562	ENST00000256861		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000379562	ENST00000397146		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000379562	ENST00000298441		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000379562	ENST00000446830		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000379562	ENST00000434980		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000379562	ENST00000397145		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
Frame-shit	ENST00000535925	ENST00000256861		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000535925	ENST00000397146		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000535925	ENST00000298441		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000535925	ENST00000446830		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000535925	ENST00000434980		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000535925	ENST00000397145		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-3CDS	ENST00000463666	ENST00000256861		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000463666	ENST00000397146		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000463666	ENST00000298441		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000463666	ENST00000446830		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000463666	ENST00000434980		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000463666	ENST00000397145		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-3CDS	ENST00000543003	ENST00000256861		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000543003	ENST00000397146		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000543003	ENST00000298441		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000543003	ENST00000446830		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000543003	ENST00000434980		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
intron-intron	ENST00000543003	ENST00000397145		TCGA	LD	BRCA	TCGA-E2-A1LK-01A	KIN	chr10	7825044	-	ITIH5	chr10	7611747	-
5CDS-intron	ENST00000261200	ENST00000381352		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261200	ENST00000405154		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261200	ENST00000542865		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261200	ENST00000541490		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261200	ENST00000282884		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-3UTR	ENST00000261200	ENST00000538081		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261201	ENST00000381352		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261201	ENST00000405154		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261201	ENST00000542865		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261201	ENST00000541490		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000261201	ENST00000282884		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-3UTR	ENST00000261201	ENST00000538081		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000345162	ENST00000381352		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000345162	ENST00000405154		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000345162	ENST00000542865		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000345162	ENST00000541490		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000345162	ENST00000282884		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-3UTR	ENST00000345162	ENST00000538081		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000326684	ENST00000381352		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000326684	ENST00000405154		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000326684	ENST00000542865		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000326684	ENST00000541490		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000326684	ENST00000282884		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-3UTR	ENST00000326684	ENST00000538081		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000538350	ENST00000381352		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000538350	ENST00000405154		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000538350	ENST00000542865		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000538350	ENST00000541490		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-intron	ENST00000538350	ENST00000282884		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
intron-3UTR	ENST00000538350	ENST00000538081		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ABCC9	chr12	22059060	-	RASSF8	chr12	26173078	+
5CDS-intron	ENST00000378119	ENST00000430948		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000535378		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000537886		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000378214		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378119	ENST00000543707		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-intron	ENST00000540769	ENST00000430948		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000535378		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000537886		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000378214		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000540769	ENST00000543707		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-intron	ENST00000378102	ENST00000430948		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000535378		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000537886		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000378214		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
5CDS-5UTR	ENST00000378102	ENST00000543707		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	C6orf62	chr6	24714546	-	KIAA0319	chr6	24601436	-
Frame-shit	ENST00000317551	ENST00000342066		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	CERS5	chr12	50560884	-	SAMD11	chr1	874420	+
5CDS-intron	ENST00000317551	ENST00000478729		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	CERS5	chr12	50560884	-	SAMD11	chr1	874420	+
5UTR-3CDS	ENST00000422340	ENST00000342066		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	CERS5	chr12	50560884	-	SAMD11	chr1	874420	+
5UTR-intron	ENST00000422340	ENST00000478729		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	CERS5	chr12	50560884	-	SAMD11	chr1	874420	+
5UTR-3CDS	ENST00000547852	ENST00000342066		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	CERS5	chr12	50560884	-	SAMD11	chr1	874420	+
5UTR-intron	ENST00000547852	ENST00000478729		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	CERS5	chr12	50560884	-	SAMD11	chr1	874420	+
Frame-shit	ENST00000542838	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000542838	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000542838	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000542838	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-3CDS	ENST00000251758	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-3CDS	ENST00000251758	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-5UTR	ENST00000251758	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-intron	ENST00000251758	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000407793	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000407793	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000407793	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000407793	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000228264	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000228264	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000228264	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000228264	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000545668	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000545668	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000545668	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000545668	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000350437	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000350437	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000350437	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000350437	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-3CDS	ENST00000539673	ENST00000428559		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-3CDS	ENST00000539673	ENST00000532964		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-5UTR	ENST00000539673	ENST00000526530		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
3UTR-intron	ENST00000539673	ENST00000532573		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	DDX11	chr12	31250931	+	DERA	chr12	16109870	+
Frame-shit	ENST00000534526	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000534526	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000534526	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5CDS-intron	ENST00000534526	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5CDS-intron	ENST00000534526	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000531134	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000531134	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000531134	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5CDS-intron	ENST00000531134	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5CDS-intron	ENST00000531134	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000427716	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000427716	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000427716	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000427716	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000427716	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000266482	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000266482	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000266482	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000266482	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000266482	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000546442	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000546442	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000546442	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000546442	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000546442	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000525053	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000525053	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
Frame-shit	ENST00000525053	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5CDS-intron	ENST00000525053	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5CDS-intron	ENST00000525053	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
intron-3CDS	ENST00000381025	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
intron-3CDS	ENST00000381025	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
intron-3CDS	ENST00000381025	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
intron-intron	ENST00000381025	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
intron-intron	ENST00000381025	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000472289	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000472289	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000472289	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000472289	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-intron	ENST00000472289	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
3UTR-3CDS	ENST00000473513	ENST00000261200		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
3UTR-3CDS	ENST00000473513	ENST00000261201		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
3UTR-3CDS	ENST00000473513	ENST00000345162		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
3UTR-intron	ENST00000473513	ENST00000326684		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
3UTR-intron	ENST00000473513	ENST00000538350		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	FGD4	chr12	32717223	+	ABCC9	chr12	22040868	-
5UTR-3CDS	ENST00000540664	ENST00000331366		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-5UTR	ENST00000540664	ENST00000538596		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000540664	ENST00000546603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000540664	ENST00000360449		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-3CDS	ENST00000371103	ENST00000331366		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-5UTR	ENST00000371103	ENST00000538596		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000371103	ENST00000546603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000371103	ENST00000360449		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-3CDS	ENST00000356016	ENST00000331366		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-5UTR	ENST00000356016	ENST00000538596		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000356016	ENST00000546603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000356016	ENST00000360449		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-3CDS	ENST00000371097	ENST00000331366		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-5UTR	ENST00000371097	ENST00000538596		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000371097	ENST00000546603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-intron	ENST00000371097	ENST00000360449		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
intron-3CDS	ENST00000498444	ENST00000331366		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
intron-5UTR	ENST00000498444	ENST00000538596		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
intron-intron	ENST00000498444	ENST00000546603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
intron-intron	ENST00000498444	ENST00000360449		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	LCOR	chr10	98593236	+	CPNE8	chr12	39096723	-
5UTR-3CDS	ENST00000261681	ENST00000381346		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000261681	ENST00000553384		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000261681	ENST00000428130		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000555925	ENST00000381346		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000555925	ENST00000553384		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000555925	ENST00000428130		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
3UTR-3CDS	ENST00000554911	ENST00000381346		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
3UTR-3CDS	ENST00000554911	ENST00000553384		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
3UTR-3CDS	ENST00000554911	ENST00000428130		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000556345	ENST00000381346		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000556345	ENST00000553384		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000556345	ENST00000428130		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MPP5	chr14	67708250	+	RDH11	chr14	68151921	-
5UTR-3CDS	ENST00000545708	ENST00000370256		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000545708	ENST00000260506		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000545708	ENST00000271234		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000545708	ENST00000604705		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000545708	ENST00000370253		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000540243	ENST00000370256		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000540243	ENST00000260506		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000540243	ENST00000271234		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000540243	ENST00000604705		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-3CDS	ENST00000540243	ENST00000370253		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370298	ENST00000370256		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370298	ENST00000260506		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370298	ENST00000271234		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370298	ENST00000604705		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370298	ENST00000370253		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
3UTR-3CDS	ENST00000471953	ENST00000370256		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
3UTR-3CDS	ENST00000471953	ENST00000260506		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
3UTR-3CDS	ENST00000471953	ENST00000271234		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
3UTR-3CDS	ENST00000471953	ENST00000604705		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
3UTR-3CDS	ENST00000471953	ENST00000370253		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370303	ENST00000370256		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370303	ENST00000260506		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370303	ENST00000271234		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370303	ENST00000604705		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
In-frame	ENST00000370303	ENST00000370253		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	MTF2	chr1	93545088	+	FNBP1L	chr1	93987639	+
5UTR-5UTR	ENST00000380542	ENST00000561603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
5UTR-5UTR	ENST00000380542	ENST00000304330		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
5UTR-intron	ENST00000380542	ENST00000568413		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
intron-5UTR	ENST00000469089	ENST00000561603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
intron-5UTR	ENST00000469089	ENST00000304330		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
intron-intron	ENST00000469089	ENST00000568413		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
5UTR-5UTR	ENST00000526115	ENST00000561603		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
5UTR-5UTR	ENST00000526115	ENST00000304330		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
5UTR-intron	ENST00000526115	ENST00000568413		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NAP1L4	chr11	3013484	-	RPAP1	chr15	41829399	-
In-frame	ENST00000356175	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000358273	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000431387	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000431387	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000431387	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5UTR-3CDS	ENST00000373647	ENST00000371457		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
5UTR-3CDS	ENST00000373647	ENST00000277531		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
5UTR-3CDS	ENST00000373647	ENST00000406427		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
5UTR-intron	ENST00000373647	ENST00000492278		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-3CDS	ENST00000493854	ENST00000371457		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-3CDS	ENST00000493854	ENST00000277531		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-3CDS	ENST00000493854	ENST00000406427		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-intron	ENST00000493854	ENST00000492278		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-3CDS	ENST00000373643	ENST00000371457		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-3CDS	ENST00000373643	ENST00000277531		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-3CDS	ENST00000373643	ENST00000406427		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
intron-intron	ENST00000373643	ENST00000492278		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RABGAP1	chr9	125703372	+	PNPLA7	chr9	140379188	-
5UTR-5UTR	ENST00000381352	ENST00000541632		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000381352	ENST00000229002		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000381352	ENST00000538724		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000381352	ENST00000536890		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000405154	ENST00000541632		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000405154	ENST00000229002		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000405154	ENST00000538724		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000405154	ENST00000536890		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542865	ENST00000541632		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542865	ENST00000229002		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542865	ENST00000538724		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542865	ENST00000536890		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000541490	ENST00000541632		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000541490	ENST00000229002		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000541490	ENST00000538724		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000541490	ENST00000536890		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000282884	ENST00000541632		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000282884	ENST00000229002		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000282884	ENST00000538724		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000282884	ENST00000536890		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
3UTR-5UTR	ENST00000538081	ENST00000541632		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
3UTR-5UTR	ENST00000538081	ENST00000229002		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
3UTR-5UTR	ENST00000538081	ENST00000538724		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
3UTR-5UTR	ENST00000538081	ENST00000536890		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	RASSF8	chr12	26112081	+	RERGL	chr12	18241890	-
In-frame	ENST00000265361	ENST00000361727		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
In-frame	ENST00000265361	ENST00000538075		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5CDS-3UTR	ENST00000265361	ENST00000463592		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
Frame-shit	ENST00000544525	ENST00000361727		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
Frame-shit	ENST00000544525	ENST00000538075		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5CDS-3UTR	ENST00000544525	ENST00000463592		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
Frame-shit	ENST00000419255	ENST00000361727		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
Frame-shit	ENST00000419255	ENST00000538075		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5CDS-3UTR	ENST00000419255	ENST00000463592		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
Frame-shit	ENST00000536800	ENST00000361727		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
Frame-shit	ENST00000536800	ENST00000538075		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5CDS-3UTR	ENST00000536800	ENST00000463592		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5UTR-3CDS	ENST00000487621	ENST00000361727		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5UTR-3CDS	ENST00000487621	ENST00000538075		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
5UTR-3UTR	ENST00000487621	ENST00000463592		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SEMA3C	chr7	80545995	-	CNTNAP2	chr7	148112509	+
intron-3CDS	ENST00000327367	ENST00000178640		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000327367	ENST00000560591		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000327367	ENST00000395476		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000327367	ENST00000354498		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-intron	ENST00000327367	ENST00000340972		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3CDS	ENST00000559092	ENST00000178640		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000559092	ENST00000560591		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000559092	ENST00000395476		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000559092	ENST00000354498		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-intron	ENST00000559092	ENST00000340972		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
5UTR-3CDS	ENST00000540846	ENST00000178640		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
5UTR-3UTR	ENST00000540846	ENST00000560591		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
5UTR-3UTR	ENST00000540846	ENST00000395476		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
5UTR-3UTR	ENST00000540846	ENST00000354498		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
5UTR-intron	ENST00000540846	ENST00000340972		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3CDS	ENST00000439724	ENST00000178640		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000439724	ENST00000560591		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000439724	ENST00000395476		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000439724	ENST00000354498		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-intron	ENST00000439724	ENST00000340972		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3CDS	ENST00000537194	ENST00000178640		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000537194	ENST00000560591		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000537194	ENST00000395476		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-3UTR	ENST00000537194	ENST00000354498		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
intron-intron	ENST00000537194	ENST00000340972		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	SMAD3	chr15	67418322	+	MAP2K5	chr15	67855621	+
5UTR-3CDS	ENST00000358409	ENST00000333957		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000358409	ENST00000446597		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000358409	ENST00000536386		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000358409	ENST00000396028		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000358409	ENST00000542676		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000358409	ENST00000544930		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000358409	ENST00000545552		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-intron	ENST00000358409	ENST00000540703		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000333957		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000446597		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000536386		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000396028		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000542676		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000544930		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000359864	ENST00000545552		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-intron	ENST00000359864	ENST00000540703		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000333957		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000446597		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000536386		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000396028		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000542676		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000544930		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-3CDS	ENST00000397122	ENST00000545552		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
5UTR-intron	ENST00000397122	ENST00000540703		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	TEAD4	chr12	3069206	+	C2CD5	chr12	22646271	-
Frame-shit	ENST00000311275	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000311275	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000311275	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000360911	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000360911	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000360911	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000458360	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000458360	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000458360	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000262975	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000262975	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000262975	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000471951	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000471951	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000471951	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000352431	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000352431	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000352431	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000396281	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000396281	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000396281	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000446994	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000446994	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000446994	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000536340	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000536340	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000536340	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000355972	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
Frame-shit	ENST00000355972	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000355972	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000540497	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000540497	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000540497	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000461685	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000461685	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000461685	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000372023	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000372023	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
5CDS-intron	ENST00000372023	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
intron-3CDS	ENST00000468376	ENST00000292672		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
intron-3CDS	ENST00000468376	ENST00000541430		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
intron-intron	ENST00000468376	ENST00000588101		TCGA	LD	BRCA	TCGA-E2-A1LL-01A	ZMYND8	chr20	45976600	-	CELF5	chr19	3250983	+
In-frame	ENST00000264033	ENST00000252108		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CBL	chr11	119158656	+	UBE4A	chr11	118261372	+
In-frame	ENST00000264033	ENST00000431736		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CBL	chr11	119158656	+	UBE4A	chr11	118261372	+
In-frame	ENST00000264033	ENST00000545354		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CBL	chr11	119158656	+	UBE4A	chr11	118261372	+
intron-5UTR	ENST00000524630	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000524630	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000524630	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000529919	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000529919	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000529919	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000399039	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000399039	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-5UTR	ENST00000399039	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000360682	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000360682	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000360682	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361796	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361796	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361796	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361391	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361391	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361391	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000530094	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000530094	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000530094	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000428599	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000428599	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000428599	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361332	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361332	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000361332	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000527467	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000527467	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000527467	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000415361	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000415361	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000415361	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532245	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532245	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532245	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532463	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532463	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532463	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000528232	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000528232	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000528232	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529986	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529986	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529986	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000531014	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000531014	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000531014	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000358694	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000358694	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000358694	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526772	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526772	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526772	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532787	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532787	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532787	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000533667	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000533667	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000533667	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529873	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529873	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529873	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000525902	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000525902	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000525902	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529526	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529526	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000529526	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532649	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532649	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532649	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000426142	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000426142	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000426142	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532844	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532844	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000532844	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000528621	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000528621	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000528621	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000399050	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000399050	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000399050	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526357	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526357	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526357	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000530748	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000530748	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000530748	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000534579	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000534579	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000534579	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526938	ENST00000257245		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526938	ENST00000525587		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
5UTR-5UTR	ENST00000526938	ENST00000525158		TCGA	LD	BRCA	TCGA-E2-A1LS-01A	CTNND1	chr11	57529518	+	TIMM10	chr11	57297707	-
intron-3CDS	ENST00000359236	ENST00000550916		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000359236	ENST00000378689		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-3UTR	ENST00000359236	ENST00000435775		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-3UTR	ENST00000359236	ENST00000378692		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000359236	ENST00000320460		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000359236	ENST00000547164		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000359236	ENST00000441218		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-3CDS	ENST00000536905	ENST00000550916		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000536905	ENST00000378689		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-3UTR	ENST00000536905	ENST00000435775		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-3UTR	ENST00000536905	ENST00000378692		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000536905	ENST00000320460		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000536905	ENST00000547164		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
intron-intron	ENST00000536905	ENST00000441218		TCGA	LD	BRCA	TCGA-E2-A2P5-01A	VSIG10	chr12	118564286	-	GLIPR1L2	chr12	75824495	+
5CDS-intron	ENST00000374464	ENST00000453919		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	CSGALNACT2	chr10	43651258	+	AGAP9	chr10	48919894	-
5CDS-intron	ENST00000374464	ENST00000456984		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	CSGALNACT2	chr10	43651258	+	AGAP9	chr10	48919894	-
5CDS-intron	ENST00000374466	ENST00000453919		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	CSGALNACT2	chr10	43651258	+	AGAP9	chr10	48919894	-
5CDS-intron	ENST00000374466	ENST00000456984		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	CSGALNACT2	chr10	43651258	+	AGAP9	chr10	48919894	-
5UTR-3CDS	ENST00000402198	ENST00000446450		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000402198	ENST00000354956		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000402198	ENST00000354449		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-intron	ENST00000402198	ENST00000469654		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000402466	ENST00000446450		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000402466	ENST00000354956		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000402466	ENST00000354449		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-intron	ENST00000402466	ENST00000469654		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000406341	ENST00000446450		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000406341	ENST00000354956		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000406341	ENST00000354449		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
5UTR-intron	ENST00000406341	ENST00000469654		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000407969	ENST00000446450		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000407969	ENST00000354956		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000407969	ENST00000354449		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-intron	ENST00000407969	ENST00000469654		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000302463	ENST00000446450		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000302463	ENST00000354956		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000302463	ENST00000354449		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-intron	ENST00000302463	ENST00000469654		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000488236	ENST00000446450		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000488236	ENST00000354956		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000488236	ENST00000354449		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-intron	ENST00000488236	ENST00000469654		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	SETD5	chr3	9439661	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000559332	ENST00000294981		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
intron-3CDS	ENST00000559332	ENST00000367103		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
intron-intron	ENST00000559332	ENST00000479009		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-3CDS	ENST00000558311	ENST00000294981		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-3CDS	ENST00000558311	ENST00000367103		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-intron	ENST00000558311	ENST00000479009		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-3CDS	ENST00000267973	ENST00000294981		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-3CDS	ENST00000267973	ENST00000367103		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-intron	ENST00000267973	ENST00000479009		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-3CDS	ENST00000558459	ENST00000294981		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-3CDS	ENST00000558459	ENST00000367103		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
5UTR-intron	ENST00000558459	ENST00000479009		TCGA	LD	BRCA	TCGA-E2-A56Z-01A	WDR61	chr15	78591904	-	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000540367	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	CPT1A	chr11	68579905	-	MS4A18	chr11	60508503	+
Frame-shit	ENST00000376618	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	CPT1A	chr11	68579905	-	MS4A18	chr11	60508503	+
Frame-shit	ENST00000265641	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	CPT1A	chr11	68579905	-	MS4A18	chr11	60508503	+
Frame-shit	ENST00000539743	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	CPT1A	chr11	68579905	-	MS4A18	chr11	60508503	+
intron-3CDS	ENST00000537756	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	CPT1A	chr11	68579905	-	MS4A18	chr11	60508503	+
intron-3CDS	ENST00000538994	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	CPT1A	chr11	68579905	-	MS4A18	chr11	60508503	+
5CDS-intron	ENST00000320580	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	PACS1	chr11	65961044	+	MS4A18	chr11	60496777	+
intron-intron	ENST00000529757	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	PACS1	chr11	65961044	+	MS4A18	chr11	60496777	+
intron-intron	ENST00000524815	ENST00000398983		TCGA	LD	BRCA	TCGA-E2-A572-01A	PACS1	chr11	65961044	+	MS4A18	chr11	60496777	+
In-frame	ENST00000553331	ENST00000531120		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
In-frame	ENST00000553331	ENST00000524896		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000553331	ENST00000532054		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
In-frame	ENST00000216832	ENST00000531120		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
In-frame	ENST00000216832	ENST00000524896		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000216832	ENST00000532054		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
In-frame	ENST00000556530	ENST00000531120		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
In-frame	ENST00000556530	ENST00000524896		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000556530	ENST00000532054		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
intron-3CDS	ENST00000557680	ENST00000531120		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
intron-3CDS	ENST00000557680	ENST00000524896		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
intron-intron	ENST00000557680	ENST00000532054		TCGA	LD	BRCA	TCGA-E2-A573-01A	PNN	chr14	39645353	+	EIF3M	chr11	32616460	+
intron-3CDS	ENST00000521746	ENST00000192788		TCGA	LD	BRCA	TCGA-E2-A574-01A	PLEKHA2	chr8	38814904	+	UHRF1BP1	chr6	34838631	+
intron-3CDS	ENST00000521746	ENST00000452449		TCGA	LD	BRCA	TCGA-E2-A574-01A	PLEKHA2	chr8	38814904	+	UHRF1BP1	chr6	34838631	+
Frame-shit	ENST00000420274	ENST00000192788		TCGA	LD	BRCA	TCGA-E2-A574-01A	PLEKHA2	chr8	38814904	+	UHRF1BP1	chr6	34838631	+
Frame-shit	ENST00000420274	ENST00000452449		TCGA	LD	BRCA	TCGA-E2-A574-01A	PLEKHA2	chr8	38814904	+	UHRF1BP1	chr6	34838631	+
3UTR-3CDS	ENST00000388745	ENST00000192788		TCGA	LD	BRCA	TCGA-E2-A574-01A	PLEKHA2	chr8	38814904	+	UHRF1BP1	chr6	34838631	+
3UTR-3CDS	ENST00000388745	ENST00000452449		TCGA	LD	BRCA	TCGA-E2-A574-01A	PLEKHA2	chr8	38814904	+	UHRF1BP1	chr6	34838631	+
5UTR-3CDS	ENST00000535420	ENST00000368439		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000535420	ENST00000368436		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000535420	ENST00000308987		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3UTR	ENST00000535420	ENST00000471245		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-intron	ENST00000535420	ENST00000600888		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000368426	ENST00000368439		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000368426	ENST00000368436		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000368426	ENST00000308987		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3UTR	ENST00000368426	ENST00000471245		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-intron	ENST00000368426	ENST00000600888		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3CDS	ENST00000487542	ENST00000368439		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3CDS	ENST00000487542	ENST00000368436		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3CDS	ENST00000487542	ENST00000308987		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-3UTR	ENST00000487542	ENST00000471245		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
3UTR-intron	ENST00000487542	ENST00000600888		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000417934	ENST00000368439		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000417934	ENST00000368436		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3CDS	ENST00000417934	ENST00000308987		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-3UTR	ENST00000417934	ENST00000471245		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5UTR-intron	ENST00000417934	ENST00000600888		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000292176	ENST00000368439		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000292176	ENST00000368436		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000292176	ENST00000308987		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-3UTR	ENST00000292176	ENST00000471245		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
intron-intron	ENST00000292176	ENST00000600888		TCGA	LD	BRCA	TCGA-E2-A574-01A	ZBTB7B	chr1	154975419	+	CKS1B	chr1	154950463	+
5CDS-intron	ENST00000263354	ENST00000414155		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	NAPA	chr19	48018100	-	PPP5D1	chr19	46984697	-
5CDS-5UTR	ENST00000263354	ENST00000595691		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	NAPA	chr19	48018100	-	PPP5D1	chr19	46984697	-
5CDS-intron	ENST00000595227	ENST00000414155		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	NAPA	chr19	48018100	-	PPP5D1	chr19	46984697	-
5CDS-5UTR	ENST00000595227	ENST00000595691		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	NAPA	chr19	48018100	-	PPP5D1	chr19	46984697	-
5UTR-intron	ENST00000593785	ENST00000414155		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	NAPA	chr19	48018100	-	PPP5D1	chr19	46984697	-
5UTR-5UTR	ENST00000593785	ENST00000595691		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	NAPA	chr19	48018100	-	PPP5D1	chr19	46984697	-
In-frame	ENST00000369110	ENST00000369046		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PREP	chr6	105845728	-	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000369110	ENST00000467262		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PREP	chr6	105845728	-	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000369110	ENST00000369044		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PREP	chr6	105845728	-	QRSL1	chr6	107088224	+
Frame-shit	ENST00000356297	ENST00000355221		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
Frame-shit	ENST00000356297	ENST00000520188		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
Frame-shit	ENST00000356297	ENST00000359530		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
5CDS-intron	ENST00000356297	ENST00000523899		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
5CDS-intron	ENST00000356297	ENST00000396774		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
Frame-shit	ENST00000543296	ENST00000355221		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
Frame-shit	ENST00000543296	ENST00000520188		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
Frame-shit	ENST00000543296	ENST00000359530		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
5CDS-intron	ENST00000543296	ENST00000523899		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
5CDS-intron	ENST00000543296	ENST00000396774		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	PXDNL	chr8	52721741	-	ATP6V1H	chr8	54669216	-
In-frame	ENST00000369046	ENST00000343245		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
In-frame	ENST00000369046	ENST00000369070		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
In-frame	ENST00000369046	ENST00000369076		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
5CDS-intron	ENST00000369046	ENST00000360666		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
5CDS-intron	ENST00000369046	ENST00000475645		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
intron-3CDS	ENST00000467262	ENST00000343245		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
intron-3CDS	ENST00000467262	ENST00000369070		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
intron-3CDS	ENST00000467262	ENST00000369076		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
intron-intron	ENST00000467262	ENST00000360666		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
intron-intron	ENST00000467262	ENST00000475645		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
In-frame	ENST00000369044	ENST00000343245		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
In-frame	ENST00000369044	ENST00000369070		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
In-frame	ENST00000369044	ENST00000369076		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
5CDS-intron	ENST00000369044	ENST00000360666		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
5CDS-intron	ENST00000369044	ENST00000475645		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	QRSL1	chr6	107090965	+	ATG5	chr6	106740981	-
5CDS-5UTR	ENST00000381638	ENST00000541913		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5CDS-5UTR	ENST00000381638	ENST00000397168		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5CDS-5UTR	ENST00000381638	ENST00000572969		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5CDS-5UTR	ENST00000381638	ENST00000355380		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5CDS-5UTR	ENST00000381638	ENST00000575375		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5CDS-5UTR	ENST00000381638	ENST00000573128		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5CDS-5UTR	ENST00000381638	ENST00000268981		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000541913		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000397168		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000572969		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000355380		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000575375		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000573128		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
5UTR-5UTR	ENST00000574474	ENST00000268981		TCGA	LD	BRCA	TCGA-E2-A9RU-01A	ZZEF1	chr17	4005611	-	SPATA22	chr17	3372692	-
Frame-shit	ENST00000487861	ENST00000341516		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487861	ENST00000554215		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487861	ENST00000556847		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487861	ENST00000557386		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487861	ENST00000389997		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-intron	ENST00000487861	ENST00000553293		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
Frame-shit	ENST00000471583	ENST00000341516		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000471583	ENST00000554215		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000471583	ENST00000556847		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000471583	ENST00000557386		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000471583	ENST00000389997		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-intron	ENST00000471583	ENST00000553293		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
Frame-shit	ENST00000487270	ENST00000341516		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487270	ENST00000554215		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487270	ENST00000556847		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487270	ENST00000557386		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000487270	ENST00000389997		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-intron	ENST00000487270	ENST00000553293		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
Frame-shit	ENST00000488612	ENST00000341516		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000488612	ENST00000554215		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000488612	ENST00000556847		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000488612	ENST00000557386		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000488612	ENST00000389997		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-intron	ENST00000488612	ENST00000553293		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
Frame-shit	ENST00000390683	ENST00000341516		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000390683	ENST00000554215		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000390683	ENST00000556847		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000390683	ENST00000557386		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-5UTR	ENST00000390683	ENST00000389997		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
5CDS-intron	ENST00000390683	ENST00000553293		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-3CDS	ENST00000469165	ENST00000341516		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-5UTR	ENST00000469165	ENST00000554215		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-5UTR	ENST00000469165	ENST00000556847		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-5UTR	ENST00000469165	ENST00000557386		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-5UTR	ENST00000469165	ENST00000389997		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-intron	ENST00000469165	ENST00000553293		TCGA	LD	BRCA	TCGA-E9-A1N4-01A	RAD51B	chr14	68353921	+	DCAF5	chr14	69589077	-
3UTR-5UTR	ENST00000518270	ENST00000359511		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000518270	ENST00000423538		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-3UTR	ENST00000518270	ENST00000469537		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000520817	ENST00000359511		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000520817	ENST00000423538		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-3UTR	ENST00000520817	ENST00000469537		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000405786	ENST00000359511		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000405786	ENST00000423538		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-3UTR	ENST00000405786	ENST00000469537		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000357743	ENST00000359511		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000357743	ENST00000423538		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-3UTR	ENST00000357743	ENST00000469537		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000521417	ENST00000359511		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-5UTR	ENST00000521417	ENST00000423538		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
3UTR-3UTR	ENST00000521417	ENST00000469537		TCGA	LD	BRCA	TCGA-E9-A1N6-01A	GOLGA7	chr8	41364640	+	SLC25A44	chr1	156169626	+
In-frame	ENST00000010404	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000010404	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000010404	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000396210	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000396210	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000396210	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000535309	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000535309	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000535309	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000540056	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000540056	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000540056	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000396209	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000396209	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000396209	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000396207	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
In-frame	ENST00000396207	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000396207	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
intron-3CDS	ENST00000359720	ENST00000256079		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
intron-3CDS	ENST00000359720	ENST00000544829		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
intron-intron	ENST00000359720	ENST00000538338		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	MGST1	chr12	16507204	+	IPO8	chr12	30829521	-
5CDS-intron	ENST00000564978	ENST00000438132		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000542263		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000417362		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000251143		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000543152		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000448695		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000544275		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000564978	ENST00000538853		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000438132		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000542263		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000417362		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000251143		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000543152		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000448695		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000544275		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
5CDS-intron	ENST00000320805	ENST00000538853		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000438132		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000542263		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000417362		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000251143		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000543152		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000448695		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000544275		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
3UTR-intron	ENST00000562977	ENST00000538853		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000438132		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000542263		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000417362		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000251143		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000543152		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000448695		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000544275		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
intron-intron	ENST00000568148	ENST00000538853		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NFATC2IP	chr16	28963525	+	C16orf62	chr16	19716438	+
In-frame	ENST00000330537	ENST00000356166		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-5UTR	ENST00000330537	ENST00000568722		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-3UTR	ENST00000330537	ENST00000482749		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-intron	ENST00000330537	ENST00000395073		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-intron	ENST00000330537	ENST00000287468		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
In-frame	ENST00000381474	ENST00000356166		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-5UTR	ENST00000381474	ENST00000568722		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-3UTR	ENST00000381474	ENST00000482749		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-intron	ENST00000381474	ENST00000395073		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5CDS-intron	ENST00000381474	ENST00000287468		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5UTR-3CDS	ENST00000543392	ENST00000356166		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5UTR-5UTR	ENST00000543392	ENST00000568722		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5UTR-3UTR	ENST00000543392	ENST00000482749		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5UTR-intron	ENST00000543392	ENST00000395073		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
5UTR-intron	ENST00000543392	ENST00000287468		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	FBRS	chr16	30673741	+
Frame-shit	ENST00000330537	ENST00000300835		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
Frame-shit	ENST00000330537	ENST00000542965		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
5CDS-3UTR	ENST00000330537	ENST00000571654		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
Frame-shit	ENST00000381474	ENST00000300835		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
Frame-shit	ENST00000381474	ENST00000542965		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
5CDS-3UTR	ENST00000381474	ENST00000571654		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
5UTR-3CDS	ENST00000543392	ENST00000300835		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
5UTR-3CDS	ENST00000543392	ENST00000542965		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
5UTR-3UTR	ENST00000543392	ENST00000571654		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	NOMO2	chr16	18573198	-	PRR14	chr16	30666672	+
Frame-shit	ENST00000541292	ENST00000367882		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PEX7	chr6	137147607	+	TCF21	chr6	134210556	+
In-frame	ENST00000541292	ENST00000237316		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PEX7	chr6	137147607	+	TCF21	chr6	134210556	+
Frame-shit	ENST00000318471	ENST00000367882		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PEX7	chr6	137147607	+	TCF21	chr6	134210556	+
In-frame	ENST00000318471	ENST00000237316		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PEX7	chr6	137147607	+	TCF21	chr6	134210556	+
Frame-shit	ENST00000367756	ENST00000367882		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PEX7	chr6	137147607	+	TCF21	chr6	134210556	+
In-frame	ENST00000367756	ENST00000237316		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PEX7	chr6	137147607	+	TCF21	chr6	134210556	+
Frame-shit	ENST00000368226	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
Frame-shit	ENST00000368227	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
Frame-shit	ENST00000532331	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
Frame-shit	ENST00000368213	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
Frame-shit	ENST00000368210	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
Frame-shit	ENST00000368215	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
Frame-shit	ENST00000368207	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
5UTR-3CDS	ENST00000524481	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
intron-3CDS	ENST00000525459	ENST00000360388		TCGA	LD	BRCA	TCGA-E9-A1N8-01A	PTPRK	chr6	128385903	-	SLC35F1	chr6	118475608	+
intron-intron	ENST00000357103	ENST00000471903		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ADIPOR2	chr12	1800379	+	FAM72B	chr1	143910155	-
intron-intron	ENST00000357103	ENST00000369390		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ADIPOR2	chr12	1800379	+	FAM72B	chr1	143910155	-
intron-intron	ENST00000357103	ENST00000355228		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ADIPOR2	chr12	1800379	+	FAM72B	chr1	143910155	-
intron-intron	ENST00000544470	ENST00000471903		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ADIPOR2	chr12	1800379	+	FAM72B	chr1	143910155	-
intron-intron	ENST00000544470	ENST00000369390		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ADIPOR2	chr12	1800379	+	FAM72B	chr1	143910155	-
intron-intron	ENST00000544470	ENST00000355228		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ADIPOR2	chr12	1800379	+	FAM72B	chr1	143910155	-
5CDS-5UTR	ENST00000361915	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000361915	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361915	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361915	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361915	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000294724	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000294724	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000294724	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000294724	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000294724	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000370165	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000370165	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370165	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370165	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370165	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000370163	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000370163	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370163	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370163	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370163	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000361302	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000361302	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361302	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361302	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361302	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000370161	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000370161	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370161	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370161	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000370161	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000361522	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000361522	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361522	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361522	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000361522	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000477753	ENST00000253251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000477753	ENST00000377157		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000477753	ENST00000343090		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000477753	ENST00000377153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-intron	ENST00000477753	ENST00000475795		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	AGL	chr1	100342153	+	UBE4B	chr1	10093280	+
5CDS-5UTR	ENST00000287394	ENST00000426361		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATAD2	chr8	124408427	-	ZNF252P	chr8	146203939	-
intron-5UTR	ENST00000521903	ENST00000426361		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATAD2	chr8	124408427	-	ZNF252P	chr8	146203939	-
intron-5UTR	ENST00000534257	ENST00000426361		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATAD2	chr8	124408427	-	ZNF252P	chr8	146203939	-
5CDS-intron	ENST00000309469	ENST00000381923		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
5CDS-3UTR	ENST00000309469	ENST00000545924		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
5CDS-intron	ENST00000309469	ENST00000298530		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
5CDS-intron	ENST00000309469	ENST00000536952		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
intron-intron	ENST00000540862	ENST00000381923		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
intron-3UTR	ENST00000540862	ENST00000545924		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
intron-intron	ENST00000540862	ENST00000298530		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
intron-intron	ENST00000540862	ENST00000536952		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ATG4D	chr19	10659710	+	TMEM52B	chr12	10327881	+
Frame-shit	ENST00000397228	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000397228	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000397228	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000397228	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000397228	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000523887	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000523887	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000523887	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000523887	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000523887	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000276461	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000276461	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000276461	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000276461	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000276461	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000518586	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000518586	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000518586	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000518586	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000518586	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000335171	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000335171	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000335171	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000335171	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000335171	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000523107	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000523107	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000523107	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000523107	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000523107	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000519638	ENST00000287263		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000519638	ENST00000330843		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000519638	ENST00000522727		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000519638	ENST00000523182		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000519638	ENST00000524118		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	ERLIN2	chr8	37602214	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000373023	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
Frame-shit	ENST00000373023	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
5CDS-intron	ENST00000373023	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
5CDS-intron	ENST00000373023	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
Frame-shit	ENST00000373026	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
Frame-shit	ENST00000373026	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
5CDS-intron	ENST00000373026	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
5CDS-intron	ENST00000373026	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000373024	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000373024	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000373024	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000373024	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000373021	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000373021	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000373021	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000373021	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
Frame-shit	ENST00000373027	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
Frame-shit	ENST00000373027	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
5CDS-intron	ENST00000373027	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
5CDS-intron	ENST00000373027	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000458109	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000458109	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000458109	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000458109	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000467066	ENST00000396153		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-3CDS	ENST00000467066	ENST00000371778		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000467066	ENST00000545823		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
intron-intron	ENST00000467066	ENST00000472808		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	INPP5B	chr1	38397345	-	FAF1	chr1	51171563	-
In-frame	ENST00000298310	ENST00000395834		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
In-frame	ENST00000298310	ENST00000216378		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
5CDS-5UTR	ENST00000298310	ENST00000356146		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
intron-3CDS	ENST00000382135	ENST00000395834		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
intron-3CDS	ENST00000382135	ENST00000216378		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
intron-5UTR	ENST00000382135	ENST00000356146		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
In-frame	ENST00000545773	ENST00000395834		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
In-frame	ENST00000545773	ENST00000216378		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
5CDS-5UTR	ENST00000545773	ENST00000356146		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
5UTR-3CDS	ENST00000556925	ENST00000395834		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
5UTR-3CDS	ENST00000556925	ENST00000216378		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
5UTR-5UTR	ENST00000556925	ENST00000356146		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
In-frame	ENST00000546046	ENST00000395834		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
In-frame	ENST00000546046	ENST00000216378		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
5CDS-5UTR	ENST00000546046	ENST00000356146		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
intron-3CDS	ENST00000556672	ENST00000395834		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
intron-3CDS	ENST00000556672	ENST00000216378		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
intron-5UTR	ENST00000556672	ENST00000356146		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NEMF	chr14	50295009	-	CDKL1	chr14	50808940	-
In-frame	ENST00000372577	ENST00000373996		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
In-frame	ENST00000372577	ENST00000313400		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
In-frame	ENST00000372577	ENST00000361209		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
In-frame	ENST00000372577	ENST00000361477		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
In-frame	ENST00000372577	ENST00000288520		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
In-frame	ENST00000372577	ENST00000341734		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
In-frame	ENST00000372577	ENST00000358637		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000373996		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000313400		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000361209		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000361477		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000288520		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000341734		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000550219	ENST00000358637		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	NUP188	chr9	131735528	+	ASTN2	chr9	119382722	-
5CDS-5UTR	ENST00000215061	ENST00000358026		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000215061	ENST00000344626		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000215061	ENST00000429416		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000215061	ENST00000541122		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000215061	ENST00000589677		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000215061	ENST00000444061		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000215061	ENST00000590574		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000215061	ENST00000413806		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000215061	ENST00000450717		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000215061	ENST00000538456		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000358026		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000344626		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000429416		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000541122		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000589677		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000444061		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-5UTR	ENST00000601576	ENST00000590574		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-intron	ENST00000601576	ENST00000413806		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-intron	ENST00000601576	ENST00000450717		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
3UTR-intron	ENST00000601576	ENST00000538456		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000358026		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000344626		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000429416		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000541122		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000589677		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000444061		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000601529	ENST00000590574		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000601529	ENST00000413806		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000601529	ENST00000450717		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000601529	ENST00000538456		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000358026		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000344626		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000429416		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000541122		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000589677		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000444061		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-5UTR	ENST00000597836	ENST00000590574		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000597836	ENST00000413806		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000597836	ENST00000450717		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
5CDS-intron	ENST00000597836	ENST00000538456		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	OCEL1	chr19	17338008	+	SMARCA4	chr19	11094797	+
Frame-shit	ENST00000357637	ENST00000466387		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000357637	ENST00000496558		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000357637	ENST00000361291		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000357637	ENST00000402739		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000357637	ENST00000540488		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000357637	ENST00000541047		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000357637	ENST00000343114		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000357637	ENST00000496251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000357637	ENST00000409266		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000400334	ENST00000466387		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000400334	ENST00000496558		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000400334	ENST00000361291		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000400334	ENST00000402739		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000400334	ENST00000540488		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000400334	ENST00000541047		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000400334	ENST00000343114		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000400334	ENST00000496251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000400334	ENST00000409266		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000466387		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000496558		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000361291		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000402739		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000540488		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000541047		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000593225	ENST00000343114		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-intron	ENST00000593225	ENST00000496251		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
intron-intron	ENST00000593225	ENST00000409266		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	PIGN	chr18	59763081	-	CTNNA2	chr2	80874710	+
5CDS-5UTR	ENST00000381923	ENST00000461997		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-intron	ENST00000381923	ENST00000464682		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-5UTR	ENST00000381923	ENST00000489288		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
intron-5UTR	ENST00000545924	ENST00000461997		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
intron-intron	ENST00000545924	ENST00000464682		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
intron-5UTR	ENST00000545924	ENST00000489288		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-5UTR	ENST00000298530	ENST00000461997		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-intron	ENST00000298530	ENST00000464682		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-5UTR	ENST00000298530	ENST00000489288		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-5UTR	ENST00000536952	ENST00000461997		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-intron	ENST00000536952	ENST00000464682		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
5CDS-5UTR	ENST00000536952	ENST00000489288		TCGA	LD	BRCA	TCGA-E9-A1N9-01A	TMEM52B	chr12	10339188	+	RHNO1	chr12	2994449	+
In-frame	ENST00000400473	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000400473	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000400473	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000400473	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
5CDS-intron	ENST00000400473	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000256925	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
5CDS-intron	ENST00000256925	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
intron-3CDS	ENST00000585061	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
intron-intron	ENST00000585061	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000420687	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000420687	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000420687	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
In-frame	ENST00000420687	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
5CDS-intron	ENST00000420687	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CABLES1	chr18	20774504	+	RBBP8	chr18	20548769	+
Frame-shit	ENST00000535342	ENST00000286149		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000535342	ENST00000388958		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000535342	ENST00000388956		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000535342	ENST00000388957		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
5CDS-intron	ENST00000535342	ENST00000569064		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000392769	ENST00000286149		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000392769	ENST00000388958		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000392769	ENST00000388956		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000392769	ENST00000388957		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
5CDS-intron	ENST00000392769	ENST00000569064		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000541355	ENST00000286149		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000541355	ENST00000388958		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000541355	ENST00000388956		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000541355	ENST00000388957		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-intron	ENST00000541355	ENST00000569064		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000537949	ENST00000286149		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000537949	ENST00000388958		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000537949	ENST00000388956		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000537949	ENST00000388957		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-intron	ENST00000537949	ENST00000569064		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000317442	ENST00000286149		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000317442	ENST00000388958		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000317442	ENST00000388956		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000317442	ENST00000388957		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-intron	ENST00000317442	ENST00000569064		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000580482	ENST00000286149		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000580482	ENST00000388958		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000580482	ENST00000388956		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-3CDS	ENST00000580482	ENST00000388957		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
intron-intron	ENST00000580482	ENST00000569064		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CEP112	chr17	64092369	-	OTOA	chr16	21730454	+
Frame-shit	ENST00000346329	ENST00000393799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000530427		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000393800		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000534534		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000524845		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000265637		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000524904		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000393801		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000265636		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000529710		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000346329	ENST00000527403		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
Frame-shit	ENST00000301843	ENST00000393799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000530427		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000393800		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000534534		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000524845		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000265637		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000524904		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000393801		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000265636		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000529710		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000301843	ENST00000527403		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000527622	ENST00000393799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000530427		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000393800		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000534534		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000524845		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000265637		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000524904		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000393801		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000265636		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000529710		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000527622	ENST00000527403		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
Frame-shit	ENST00000376561	ENST00000393799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000530427		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000393800		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000534534		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000524845		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000265637		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000524904		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000393801		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000265636		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000529710		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
5CDS-intron	ENST00000376561	ENST00000527403		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-3CDS	ENST00000538675	ENST00000393799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000530427		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000393800		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000534534		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000524845		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000265637		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000524904		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000393801		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000265636		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000529710		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
intron-intron	ENST00000538675	ENST00000527403		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	CTTN	chr11	70265962	+	PPP6R3	chr11	68315535	+
Frame-shit	ENST00000515408	ENST00000379638		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
Frame-shit	ENST00000515408	ENST00000513339		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
Frame-shit	ENST00000515408	ENST00000545426		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5CDS-5UTR	ENST00000515408	ENST00000474542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5CDS-5UTR	ENST00000515408	ENST00000504247		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
Frame-shit	ENST00000389063	ENST00000379638		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
Frame-shit	ENST00000389063	ENST00000513339		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
Frame-shit	ENST00000389063	ENST00000545426		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5CDS-5UTR	ENST00000389063	ENST00000474542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5CDS-5UTR	ENST00000389063	ENST00000504247		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5UTR-3CDS	ENST00000543319	ENST00000379638		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5UTR-3CDS	ENST00000543319	ENST00000513339		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5UTR-3CDS	ENST00000543319	ENST00000545426		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5UTR-5UTR	ENST00000543319	ENST00000474542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
5UTR-5UTR	ENST00000543319	ENST00000504247		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
3UTR-3CDS	ENST00000504961	ENST00000379638		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
3UTR-3CDS	ENST00000504961	ENST00000513339		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
3UTR-3CDS	ENST00000504961	ENST00000545426		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
3UTR-5UTR	ENST00000504961	ENST00000474542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
3UTR-5UTR	ENST00000504961	ENST00000504247		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DCP2	chr5	112312683	+	REEP5	chr5	112256953	-
intron-5UTR	ENST00000327532	ENST00000236709		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DZIP1L	chr3	137831206	-	A4GNT	chr3	137850124	-
intron-5UTR	ENST00000488595	ENST00000236709		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DZIP1L	chr3	137831206	-	A4GNT	chr3	137850124	-
5UTR-5UTR	ENST00000469243	ENST00000236709		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	DZIP1L	chr3	137831206	-	A4GNT	chr3	137850124	-
Frame-shit	ENST00000521400	ENST00000380629		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521400	ENST00000523515		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521400	ENST00000520409		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521400	ENST00000518611		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
5CDS-3UTR	ENST00000521400	ENST00000521254		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000517536	ENST00000380629		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000517536	ENST00000523515		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000517536	ENST00000520409		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000517536	ENST00000518611		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
5CDS-3UTR	ENST00000517536	ENST00000521254		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521780	ENST00000380629		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521780	ENST00000523515		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521780	ENST00000520409		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000521780	ENST00000518611		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
5CDS-3UTR	ENST00000521780	ENST00000521254		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000380476	ENST00000380629		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000380476	ENST00000523515		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000380476	ENST00000520409		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000380476	ENST00000518611		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
5CDS-3UTR	ENST00000380476	ENST00000521254		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000518379	ENST00000380629		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000518379	ENST00000523515		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000518379	ENST00000520409		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000518379	ENST00000518611		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
5CDS-3UTR	ENST00000518379	ENST00000521254		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
intron-3CDS	ENST00000520666	ENST00000380629		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
intron-3CDS	ENST00000520666	ENST00000523515		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
intron-3CDS	ENST00000520666	ENST00000520409		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
intron-3CDS	ENST00000520666	ENST00000518611		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
intron-3UTR	ENST00000520666	ENST00000521254		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	EPHX2	chr8	27401761	+	BNIP3L	chr8	26265516	+
Frame-shit	ENST00000440973	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
5CDS-intron	ENST00000440973	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
Frame-shit	ENST00000338799	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
5CDS-intron	ENST00000338799	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
intron-3CDS	ENST00000456483	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
intron-intron	ENST00000456483	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
Frame-shit	ENST00000443427	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
5CDS-intron	ENST00000443427	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
Frame-shit	ENST00000206249	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
5CDS-intron	ENST00000206249	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
intron-3CDS	ENST00000406599	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
intron-intron	ENST00000406599	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
Frame-shit	ENST00000427531	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
5CDS-intron	ENST00000427531	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
3UTR-3CDS	ENST00000482101	ENST00000367245		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
3UTR-intron	ENST00000482101	ENST00000529453		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ESR1	chr6	152265643	+	MYCT1	chr6	153042877	+
In-frame	ENST00000258733	ENST00000258742		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000258733	ENST00000410002		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000258733	ENST00000487595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000381990	ENST00000258742		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000381990	ENST00000410002		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000381990	ENST00000487595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000409458	ENST00000258742		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000409458	ENST00000410002		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000409458	ENST00000487595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
intron-3CDS	ENST00000539136	ENST00000258742		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
intron-3CDS	ENST00000539136	ENST00000410002		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
intron-3UTR	ENST00000539136	ENST00000487595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000453162	ENST00000258742		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
In-frame	ENST00000453162	ENST00000410002		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
5CDS-3UTR	ENST00000453162	ENST00000487595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
intron-3CDS	ENST00000478451	ENST00000258742		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
intron-3CDS	ENST00000478451	ENST00000410002		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
intron-3UTR	ENST00000478451	ENST00000487595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPNMB	chr7	23293931	+	NUPL2	chr7	23224689	+
Frame-shit	ENST00000392552	ENST00000409900		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392552	ENST00000488080		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392552	ENST00000409156		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392552	ENST00000295497		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392552	ENST00000409597		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
In-frame	ENST00000392551	ENST00000409900		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392551	ENST00000488080		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392551	ENST00000409156		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392551	ENST00000295497		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000392551	ENST00000409597		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
Frame-shit	ENST00000295500	ENST00000409900		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000295500	ENST00000488080		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000295500	ENST00000409156		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000295500	ENST00000295497		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
5CDS-5UTR	ENST00000295500	ENST00000409597		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
intron-3CDS	ENST00000459996	ENST00000409900		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
intron-5UTR	ENST00000459996	ENST00000488080		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
intron-5UTR	ENST00000459996	ENST00000409156		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
intron-5UTR	ENST00000459996	ENST00000295497		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
intron-5UTR	ENST00000459996	ENST00000409597		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	GPR155	chr2	175318465	-	CHN1	chr2	175677210	-
intron-3CDS	ENST00000541592	ENST00000256953		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000541592	ENST00000538313		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000541592	ENST00000536465		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-intron	ENST00000541592	ENST00000546331		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-intron	ENST00000541592	ENST00000537647		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-intron	ENST00000541592	ENST00000437578		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000539745	ENST00000256953		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000539745	ENST00000538313		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000539745	ENST00000536465		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-intron	ENST00000539745	ENST00000546331		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-intron	ENST00000539745	ENST00000537647		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-intron	ENST00000539745	ENST00000437578		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	HIST4H4	chr12	14923613	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000369026	ENST00000358595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000369026	ENST00000354396		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000369026	ENST00000515192		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000369026	ENST00000505755		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-intron	ENST00000369026	ENST00000468970		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000464132	ENST00000358595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000464132	ENST00000354396		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000464132	ENST00000515192		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000464132	ENST00000505755		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-intron	ENST00000464132	ENST00000468970		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000307940	ENST00000358595		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000307940	ENST00000354396		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000307940	ENST00000515192		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000307940	ENST00000505755		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
intron-intron	ENST00000307940	ENST00000468970		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MCL1	chr1	150549844	-	ARNT	chr1	150790506	-
5CDS-intron	ENST00000352410	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000352410	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000566377	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000566377	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000563422	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000563422	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000564003	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000564003	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000563786	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000563786	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000535694	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000535694	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000323744	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000323744	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000562606	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000562606	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000565576	ENST00000379887		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5CDS-intron	ENST00000565576	ENST00000562891		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MPI	chr15	75185143	+	ARIH1	chr15	72789132	+
5UTR-3CDS	ENST00000545708	ENST00000370310		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	FAM69A	chr1	93341987	-
5UTR-3CDS	ENST00000540243	ENST00000370310		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	FAM69A	chr1	93341987	-
Frame-shit	ENST00000370298	ENST00000370310		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	FAM69A	chr1	93341987	-
3UTR-3CDS	ENST00000471953	ENST00000370310		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	FAM69A	chr1	93341987	-
Frame-shit	ENST00000370303	ENST00000370310		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	FAM69A	chr1	93341987	-
5UTR-3CDS	ENST00000545708	ENST00000370321		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	RPL5	chr1	93298946	+
5UTR-3CDS	ENST00000540243	ENST00000370321		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	RPL5	chr1	93298946	+
Frame-shit	ENST00000370298	ENST00000370321		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	RPL5	chr1	93298946	+
3UTR-3CDS	ENST00000471953	ENST00000370321		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	RPL5	chr1	93298946	+
Frame-shit	ENST00000370303	ENST00000370321		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	MTF2	chr1	93545088	+	RPL5	chr1	93298946	+
5UTR-3CDS	ENST00000349945	ENST00000544564		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000349945	ENST00000541571		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000349945	ENST00000535424		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000349945	ENST00000378799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000349945	ENST00000538565		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000349945	ENST00000606369		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000349945	ENST00000329908		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000349945	ENST00000538850		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000349945	ENST00000378798		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
In-frame	ENST00000432919	ENST00000544564		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000432919	ENST00000541571		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000432919	ENST00000535424		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000432919	ENST00000378799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000432919	ENST00000538565		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000432919	ENST00000606369		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000432919	ENST00000329908		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000432919	ENST00000538850		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000432919	ENST00000378798		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
In-frame	ENST00000354436	ENST00000544564		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000354436	ENST00000541571		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000354436	ENST00000535424		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000354436	ENST00000378799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000354436	ENST00000538565		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000354436	ENST00000606369		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000354436	ENST00000329908		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000354436	ENST00000538850		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000354436	ENST00000378798		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
In-frame	ENST00000567239	ENST00000544564		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000567239	ENST00000541571		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000567239	ENST00000535424		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
Frame-shit	ENST00000567239	ENST00000378799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000567239	ENST00000538565		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000567239	ENST00000606369		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000567239	ENST00000329908		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000567239	ENST00000538850		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5CDS-3UTR	ENST00000567239	ENST00000378798		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000393742	ENST00000544564		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000393742	ENST00000541571		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000393742	ENST00000535424		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000393742	ENST00000378799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000393742	ENST00000538565		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000393742	ENST00000606369		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000393742	ENST00000329908		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000393742	ENST00000538850		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000393742	ENST00000378798		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000566899	ENST00000544564		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000566899	ENST00000541571		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000566899	ENST00000535424		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3CDS	ENST00000566899	ENST00000378799		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000566899	ENST00000538565		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000566899	ENST00000606369		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000566899	ENST00000329908		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000566899	ENST00000538850		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-3UTR	ENST00000566899	ENST00000378798		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	NFAT5	chr16	69600277	+	IST1	chr16	71961517	+
5UTR-5UTR	ENST00000404460	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000404460	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
intron-5UTR	ENST00000303908	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
intron-5UTR	ENST00000303908	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000409158	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000409158	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000403716	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000403716	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000234115	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000234115	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000439822	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000439822	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
3UTR-5UTR	ENST00000487980	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
3UTR-5UTR	ENST00000487980	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000438882	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000438882	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000538982	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
5UTR-5UTR	ENST00000538982	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
intron-5UTR	ENST00000409612	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
intron-5UTR	ENST00000409612	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
intron-5UTR	ENST00000409279	ENST00000409185		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
intron-5UTR	ENST00000409279	ENST00000389915		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PLEKHB2	chr2	131862971	+	FAM168B	chr2	131840230	-
Frame-shit	ENST00000368226	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000368227	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000532331	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000368213	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000368210	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000368215	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000368207	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
5UTR-3CDS	ENST00000524481	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
Frame-shit	ENST00000525459	ENST00000367658		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	PTPRK	chr6	128841404	-	HECA	chr6	139487421	+
5CDS-5UTR	ENST00000317506	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000317506	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000317506	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-5UTR	ENST00000448631	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000448631	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000448631	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5UTR-5UTR	ENST00000536251	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5UTR-intron	ENST00000536251	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5UTR-intron	ENST00000536251	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
intron-5UTR	ENST00000411657	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
intron-intron	ENST00000411657	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
intron-intron	ENST00000411657	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-5UTR	ENST00000602677	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000602677	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000602677	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-5UTR	ENST00000425512	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000425512	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000425512	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5UTR-5UTR	ENST00000602887	ENST00000268489		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5UTR-intron	ENST00000602887	ENST00000397992		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
5UTR-intron	ENST00000602887	ENST00000558842		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RANBP10	chr16	67839331	-	ZFHX3	chr16	72994093	-
intron-3CDS	ENST00000534797	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
intron-3CDS	ENST00000397614	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
intron-3CDS	ENST00000397615	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
5UTR-3CDS	ENST00000397604	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
5UTR-3CDS	ENST00000533410	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
intron-3CDS	ENST00000438658	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
5UTR-3CDS	ENST00000354420	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
5UTR-3CDS	ENST00000356187	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
intron-3CDS	ENST00000533592	ENST00000176195		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RNH1	chr11	507113	-	SCT	chr11	626530	-
Frame-shit	ENST00000590898	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000590898	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000590898	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000399022	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000399022	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000399022	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000337059	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000337059	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000337059	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000357384	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000357384	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000357384	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000588737	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000588737	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000588737	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000319040	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000319040	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
In-frame	ENST00000319040	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
intron-3CDS	ENST00000588459	ENST00000269187		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
intron-3CDS	ENST00000588459	ENST00000590986		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
intron-3CDS	ENST00000588459	ENST00000440549		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	RPRD1A	chr18	33606863	-	SLC39A6	chr18	33702233	-
Frame-shit	ENST00000305476	ENST00000409236		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SEMA4C	chr2	97527316	-	AFF3	chr2	100266128	-
Frame-shit	ENST00000305476	ENST00000356421		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SEMA4C	chr2	97527316	-	AFF3	chr2	100266128	-
Frame-shit	ENST00000305476	ENST00000317233		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SEMA4C	chr2	97527316	-	AFF3	chr2	100266128	-
Frame-shit	ENST00000305476	ENST00000409579		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SEMA4C	chr2	97527316	-	AFF3	chr2	100266128	-
5CDS-intron	ENST00000305476	ENST00000483600		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SEMA4C	chr2	97527316	-	AFF3	chr2	100266128	-
In-frame	ENST00000336915	ENST00000589222		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000336915	ENST00000407086		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000336915	ENST00000390652		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000336915	ENST00000408905		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000336915	ENST00000588462		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000336915	ENST00000585744		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000336915	ENST00000588874		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000336915	ENST00000585812		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000584924	ENST00000589222		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000584924	ENST00000407086		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000584924	ENST00000390652		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000584924	ENST00000408905		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
In-frame	ENST00000584924	ENST00000588462		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000584924	ENST00000585744		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000584924	ENST00000588874		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000584924	ENST00000585812		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SKAP1	chr17	46423267	-	BCAS3	chr17	58885365	+
intron-3CDS	ENST00000454800	ENST00000328619		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SLC37A1	chr21	43988548	+	PCP4	chr21	41300909	+
intron-3UTR	ENST00000454800	ENST00000468717		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SLC37A1	chr21	43988548	+	PCP4	chr21	41300909	+
Frame-shit	ENST00000398341	ENST00000328619		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SLC37A1	chr21	43988548	+	PCP4	chr21	41300909	+
5CDS-3UTR	ENST00000398341	ENST00000468717		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SLC37A1	chr21	43988548	+	PCP4	chr21	41300909	+
Frame-shit	ENST00000352133	ENST00000328619		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SLC37A1	chr21	43988548	+	PCP4	chr21	41300909	+
5CDS-3UTR	ENST00000352133	ENST00000468717		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SLC37A1	chr21	43988548	+	PCP4	chr21	41300909	+
In-frame	ENST00000355086	ENST00000261234		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
5CDS-3UTR	ENST00000355086	ENST00000537982		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
5CDS-5UTR	ENST00000355086	ENST00000537373		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
In-frame	ENST00000357825	ENST00000261234		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
5CDS-3UTR	ENST00000357825	ENST00000537982		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
5CDS-5UTR	ENST00000357825	ENST00000537373		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
intron-3CDS	ENST00000543397	ENST00000261234		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
intron-3UTR	ENST00000543397	ENST00000537982		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
intron-5UTR	ENST00000543397	ENST00000537373		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64174799	+
In-frame	ENST00000545294	ENST00000352210		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
In-frame	ENST00000545294	ENST00000367999		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-intron	ENST00000545294	ENST00000544598		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-3UTR	ENST00000545294	ENST00000495483		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-intron	ENST00000545294	ENST00000535223		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-intron	ENST00000545294	ENST00000432542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
intron-3CDS	ENST00000538489	ENST00000352210		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
intron-3CDS	ENST00000538489	ENST00000367999		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
intron-intron	ENST00000538489	ENST00000544598		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
intron-3UTR	ENST00000538489	ENST00000495483		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
intron-intron	ENST00000538489	ENST00000535223		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
intron-intron	ENST00000538489	ENST00000432542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
In-frame	ENST00000489294	ENST00000352210		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
In-frame	ENST00000489294	ENST00000367999		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-intron	ENST00000489294	ENST00000544598		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-3UTR	ENST00000489294	ENST00000495483		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-intron	ENST00000489294	ENST00000535223		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
5CDS-intron	ENST00000489294	ENST00000432542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
3UTR-3CDS	ENST00000282169	ENST00000352210		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
3UTR-3CDS	ENST00000282169	ENST00000367999		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
3UTR-intron	ENST00000282169	ENST00000544598		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
3UTR-3UTR	ENST00000282169	ENST00000495483		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
3UTR-intron	ENST00000282169	ENST00000535223		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
3UTR-intron	ENST00000282169	ENST00000432542		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	UHMK1	chr1	162487980	+	PPOX	chr1	161139450	+
Frame-shit	ENST00000339656	ENST00000590333		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
Frame-shit	ENST00000339656	ENST00000309383		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000339656	ENST00000585418		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000339656	ENST00000326848		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000339656	ENST00000588584		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
Frame-shit	ENST00000423137	ENST00000590333		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
Frame-shit	ENST00000423137	ENST00000309383		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000423137	ENST00000585418		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000423137	ENST00000326848		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000423137	ENST00000588584		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
Frame-shit	ENST00000419854	ENST00000590333		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
Frame-shit	ENST00000419854	ENST00000309383		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000419854	ENST00000585418		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000419854	ENST00000326848		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-intron	ENST00000419854	ENST00000588584		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
intron-3CDS	ENST00000596433	ENST00000590333		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
intron-3CDS	ENST00000596433	ENST00000309383		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
intron-intron	ENST00000596433	ENST00000585418		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
intron-intron	ENST00000596433	ENST00000326848		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
intron-intron	ENST00000596433	ENST00000588584		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587	chr19	58367601	+	BRSK1	chr19	55817620	+
5CDS-5UTR	ENST00000316462	ENST00000438693		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587B	chr19	58331313	+	TMEM150B	chr19	55834111	-
5CDS-5UTR	ENST00000316462	ENST00000326652		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587B	chr19	58331313	+	TMEM150B	chr19	55834111	-
intron-5UTR	ENST00000442832	ENST00000438693		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587B	chr19	58331313	+	TMEM150B	chr19	55834111	-
intron-5UTR	ENST00000442832	ENST00000326652		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587B	chr19	58331313	+	TMEM150B	chr19	55834111	-
intron-5UTR	ENST00000594901	ENST00000438693		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587B	chr19	58331313	+	TMEM150B	chr19	55834111	-
intron-5UTR	ENST00000594901	ENST00000326652		TCGA	LD	BRCA	TCGA-E9-A1NA-01A	ZNF587B	chr19	58331313	+	TMEM150B	chr19	55834111	-
5CDS-intron	ENST00000225235	ENST00000427197		TCGA	LD	BRCA	TCGA-E9-A1NC-01A	TBC1D12	chr10	96256929	+	SLC35G1	chr10	95713766	+
5CDS-intron	ENST00000225235	ENST00000371408		TCGA	LD	BRCA	TCGA-E9-A1NC-01A	TBC1D12	chr10	96256929	+	SLC35G1	chr10	95713766	+
intron-intron	ENST00000485048	ENST00000427197		TCGA	LD	BRCA	TCGA-E9-A1NC-01A	TBC1D12	chr10	96256929	+	SLC35G1	chr10	95713766	+
intron-intron	ENST00000485048	ENST00000371408		TCGA	LD	BRCA	TCGA-E9-A1NC-01A	TBC1D12	chr10	96256929	+	SLC35G1	chr10	95713766	+
Frame-shit	ENST00000289921	ENST00000381470		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000432128		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000443491		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000517600		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000523782		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000265800		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000415253		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000358242		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000523266		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
Frame-shit	ENST00000289921	ENST00000519907		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	FAM160B2	chr8	21946809	+	DMTN	chr8	21927392	+
5CDS-3UTR	ENST00000420083	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000420083	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000420083	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000449870	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000449870	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000449870	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000318511	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000318511	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000318511	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000407004	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000407004	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000407004	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000589998	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000589998	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000589998	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000250241	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000250241	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000250241	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000592763	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000592763	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000592763	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000588657	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000588657	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000588657	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000590261	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000590261	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000590261	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
intron-3UTR	ENST00000586544	ENST00000588651		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
intron-intron	ENST00000586544	ENST00000361113		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
intron-intron	ENST00000586544	ENST00000588174		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
Frame-shit	ENST00000340811	ENST00000452533		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000340811	ENST00000553257		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000340811	ENST00000549701		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000340811	ENST00000358214		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000340811	ENST00000548671		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000340811	ENST00000266481		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000340811	ENST00000547312		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000340811	ENST00000414834		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000340811	ENST00000381000		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000070846	ENST00000452533		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000070846	ENST00000553257		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000070846	ENST00000549701		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000070846	ENST00000358214		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000070846	ENST00000548671		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000070846	ENST00000266481		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000070846	ENST00000547312		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000070846	ENST00000414834		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000070846	ENST00000381000		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000546741	ENST00000452533		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000546741	ENST00000553257		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000546741	ENST00000549701		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000546741	ENST00000358214		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3UTR	ENST00000546741	ENST00000548671		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3UTR	ENST00000546741	ENST00000266481		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-3UTR	ENST00000546741	ENST00000547312		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-5UTR	ENST00000546741	ENST00000414834		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
intron-5UTR	ENST00000546741	ENST00000381000		TCGA	LD	BRCA	TCGA-E9-A1ND-01A	PKP2	chr12	33003700	-	DNM1L	chr12	32854349	+
Frame-shit	ENST00000260665	ENST00000526148		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
Frame-shit	ENST00000260665	ENST00000525681		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
Frame-shit	ENST00000260665	ENST00000339995		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
Frame-shit	ENST00000260665	ENST00000396525		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
5CDS-intron	ENST00000260665	ENST00000525995		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409946	ENST00000526148		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409946	ENST00000525681		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409946	ENST00000339995		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409946	ENST00000396525		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-intron	ENST00000409946	ENST00000525995		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409659	ENST00000526148		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409659	ENST00000525681		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409659	ENST00000339995		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-3CDS	ENST00000409659	ENST00000396525		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
intron-intron	ENST00000409659	ENST00000525995		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	LRPPRC	chr2	44123773	-	EIF4G2	chr11	10820660	-
In-frame	ENST00000537040	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
In-frame	ENST00000537040	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000537040	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000537040	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000537040	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-3CDS	ENST00000451864	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-3CDS	ENST00000451864	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000451864	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000451864	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000451864	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-3CDS	ENST00000400992	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-3CDS	ENST00000400992	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000400992	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000400992	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000400992	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
In-frame	ENST00000368246	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
In-frame	ENST00000368246	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368246	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368246	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368246	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-3CDS	ENST00000255013	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-3CDS	ENST00000255013	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000255013	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000255013	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5UTR-5UTR	ENST00000255013	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
In-frame	ENST00000368249	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
In-frame	ENST00000368249	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368249	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368249	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368249	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
intron-3CDS	ENST00000494874	ENST00000295688		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
intron-3CDS	ENST00000494874	ENST00000368259		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
intron-5UTR	ENST00000494874	ENST00000368261		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
intron-5UTR	ENST00000494874	ENST00000472765		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
intron-5UTR	ENST00000494874	ENST00000368256		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	RHBG	chr1	156339227	+	CCT3	chr1	156305679	-
Frame-shit	ENST00000350881	ENST00000304636		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	THBS4	chr5	79331448	+	COL3A1	chr2	189872761	+
5CDS-intron	ENST00000350881	ENST00000317840		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	THBS4	chr5	79331448	+	COL3A1	chr2	189872761	+
intron-3CDS	ENST00000511733	ENST00000304636		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	THBS4	chr5	79331448	+	COL3A1	chr2	189872761	+
intron-intron	ENST00000511733	ENST00000317840		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	THBS4	chr5	79331448	+	COL3A1	chr2	189872761	+
intron-3CDS	ENST00000504720	ENST00000304636		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	THBS4	chr5	79331448	+	COL3A1	chr2	189872761	+
intron-intron	ENST00000504720	ENST00000317840		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	THBS4	chr5	79331448	+	COL3A1	chr2	189872761	+
In-frame	ENST00000246957	ENST00000294016		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
5CDS-intron	ENST00000246957	ENST00000571889		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
In-frame	ENST00000575671	ENST00000294016		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
5CDS-intron	ENST00000575671	ENST00000571889		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
In-frame	ENST00000538171	ENST00000294016		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
5CDS-intron	ENST00000538171	ENST00000571889		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
5UTR-3CDS	ENST00000573872	ENST00000294016		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
5UTR-intron	ENST00000573872	ENST00000571889		TCGA	LD	BRCA	TCGA-E9-A1NE-01A	TRAP1	chr16	3721723	-	ADCY9	chr16	4029276	-
5CDS-intron	ENST00000336418	ENST00000394412		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
5CDS-5UTR	ENST00000336418	ENST00000558928		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
5CDS-intron	ENST00000558011	ENST00000394412		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
5CDS-5UTR	ENST00000558011	ENST00000558928		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
5CDS-intron	ENST00000560940	ENST00000394412		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
5CDS-5UTR	ENST00000560940	ENST00000558928		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
intron-intron	ENST00000560771	ENST00000394412		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
intron-5UTR	ENST00000560771	ENST00000558928		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	AP3S2	chr15	90414707	-	KIF7	chr15	90152199	-
In-frame	ENST00000268035	ENST00000400556		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
5CDS-intron	ENST00000268035	ENST00000400555		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
5CDS-intron	ENST00000268035	ENST00000580583		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
In-frame	ENST00000558762	ENST00000400556		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
5CDS-intron	ENST00000558762	ENST00000400555		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
5CDS-intron	ENST00000558762	ENST00000580583		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
intron-3CDS	ENST00000560432	ENST00000400556		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
intron-intron	ENST00000560432	ENST00000400555		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
intron-intron	ENST00000560432	ENST00000580583		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IGF1R	chr15	99467913	+	PPP4R1	chr18	9595151	-
In-frame	ENST00000268182	ENST00000328649		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IQGAP1	chr15	90969498	+	CIB1	chr15	90774739	-
intron-3CDS	ENST00000560738	ENST00000328649		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IQGAP1	chr15	90969498	+	CIB1	chr15	90774739	-
intron-3CDS	ENST00000560020	ENST00000328649		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	IQGAP1	chr15	90969498	+	CIB1	chr15	90774739	-
Frame-shit	ENST00000539437	ENST00000268035		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
Frame-shit	ENST00000539437	ENST00000558762		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000539437	ENST00000560432		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
In-frame	ENST00000268151	ENST00000268035		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
In-frame	ENST00000268151	ENST00000558762		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000268151	ENST00000560432		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
In-frame	ENST00000268150	ENST00000268035		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
In-frame	ENST00000268150	ENST00000558762		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000268150	ENST00000560432		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
Frame-shit	ENST00000566497	ENST00000268035		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
Frame-shit	ENST00000566497	ENST00000558762		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000566497	ENST00000560432		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
In-frame	ENST00000542878	ENST00000268035		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
In-frame	ENST00000542878	ENST00000558762		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000542878	ENST00000560432		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
intron-3CDS	ENST00000559997	ENST00000268035		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
intron-3CDS	ENST00000559997	ENST00000558762		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
intron-3UTR	ENST00000559997	ENST00000560432		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	MFGE8	chr15	89448988	-	IGF1R	chr15	99434554	+
Frame-shit	ENST00000347635	ENST00000473997		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000347635	ENST00000346416		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000347635	ENST00000339269		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000347635	ENST00000357886		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
5CDS-intron	ENST00000347635	ENST00000544843		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
5CDS-intron	ENST00000347635	ENST00000477105		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000407019	ENST00000473997		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000407019	ENST00000346416		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000407019	ENST00000339269		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000407019	ENST00000357886		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
5CDS-intron	ENST00000407019	ENST00000544843		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
5CDS-intron	ENST00000407019	ENST00000477105		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000425733	ENST00000473997		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000425733	ENST00000346416		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000425733	ENST00000339269		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000425733	ENST00000357886		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
intron-intron	ENST00000425733	ENST00000544843		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
intron-intron	ENST00000425733	ENST00000477105		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000396096	ENST00000473997		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000396096	ENST00000346416		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000396096	ENST00000339269		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
Frame-shit	ENST00000396096	ENST00000357886		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
5CDS-intron	ENST00000396096	ENST00000544843		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
5CDS-intron	ENST00000396096	ENST00000477105		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
3UTR-3CDS	ENST00000486184	ENST00000473997		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
3UTR-3CDS	ENST00000486184	ENST00000346416		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
3UTR-3CDS	ENST00000486184	ENST00000339269		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
3UTR-3CDS	ENST00000486184	ENST00000357886		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
3UTR-intron	ENST00000486184	ENST00000544843		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
3UTR-intron	ENST00000486184	ENST00000477105		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	NUP50	chr22	45571961	+	CDK5RAP1	chr20	31946929	-
In-frame	ENST00000541179	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
In-frame	ENST00000379749	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
In-frame	ENST00000379747	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
In-frame	ENST00000379743	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
In-frame	ENST00000379742	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
In-frame	ENST00000541481	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
intron-3CDS	ENST00000497145	ENST00000297268		TCGA	LD	BRCA	TCGA-E9-A1NF-01A	POSTN	chr13	38164509	-	COL1A2	chr7	94048810	+
5UTR-3CDS	ENST00000215582	ENST00000264434		TCGA	LD	BRCA	TCGA-E9-A1NI-01A	MISP	chr19	751171	+	C2orf42	chr2	70392767	-
5UTR-3CDS	ENST00000215582	ENST00000420306		TCGA	LD	BRCA	TCGA-E9-A1NI-01A	MISP	chr19	751171	+	C2orf42	chr2	70392767	-
5UTR-intron	ENST00000215582	ENST00000470096		TCGA	LD	BRCA	TCGA-E9-A1NI-01A	MISP	chr19	751171	+	C2orf42	chr2	70392767	-
In-frame	ENST00000326793	ENST00000310380		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000326793	ENST00000437101		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
In-frame	ENST00000326793	ENST00000429994		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000326793	ENST00000355729		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
5CDS-5UTR	ENST00000326793	ENST00000460582		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
5CDS-5UTR	ENST00000326793	ENST00000356740		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000310380		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000437101		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000429994		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000355729		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000472860	ENST00000460582		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000472860	ENST00000356740		TCGA	LD	BRCA	TCGA-E9-A1QZ-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
5UTR-5UTR	ENST00000354817	ENST00000498485		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
5UTR-5UTR	ENST00000354817	ENST00000259457		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
5UTR-3UTR	ENST00000354817	ENST00000536392		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
intron-5UTR	ENST00000527202	ENST00000498485		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
intron-5UTR	ENST00000527202	ENST00000259457		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
intron-3UTR	ENST00000527202	ENST00000536392		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
intron-5UTR	ENST00000532502	ENST00000498485		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
intron-5UTR	ENST00000532502	ENST00000259457		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
intron-3UTR	ENST00000532502	ENST00000536392		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	FAR1	chr11	13690353	+	PSMB7	chr9	127119194	-
In-frame	ENST00000237530	ENST00000371828		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000237530	ENST00000371802		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000237530	ENST00000371856		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000237530	ENST00000347458		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000237530	ENST00000340954		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000237530	ENST00000371792		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000237530	ENST00000360426		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000371828		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000371802		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000371856		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000347458		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000340954		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000371792		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
In-frame	ENST00000373622	ENST00000360426		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000371828		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000371802		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000371856		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000347458		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000340954		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000371792		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
intron-3CDS	ENST00000470352	ENST00000360426		TCGA	LD	BRCA	TCGA-E9-A1R0-01A	RPN2	chr20	35842268	+	STAU1	chr20	47741124	-
Frame-shit	ENST00000277746	ENST00000413379		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000277746	ENST00000540850		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000277746	ENST00000598840		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000277746	ENST00000270225		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000277746	ENST00000392776		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
intron-3CDS	ENST00000435510	ENST00000413379		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000435510	ENST00000540850		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000435510	ENST00000598840		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000435510	ENST00000270225		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000435510	ENST00000392776		TCGA	LD	BRCA	TCGA-E9-A1R2-01A	NRBF2	chr10	64906053	+	SAE1	chr19	47646751	+
5CDS-intron	ENST00000357277	ENST00000380060		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-intron	ENST00000357277	ENST00000398097		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-3UTR	ENST00000357277	ENST00000485305		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-intron	ENST00000303843	ENST00000380060		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-intron	ENST00000303843	ENST00000398097		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-3UTR	ENST00000303843	ENST00000485305		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-intron	ENST00000380064	ENST00000380060		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-intron	ENST00000380064	ENST00000398097		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
5CDS-3UTR	ENST00000380064	ENST00000485305		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
3UTR-intron	ENST00000469714	ENST00000380060		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
3UTR-intron	ENST00000469714	ENST00000398097		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
3UTR-3UTR	ENST00000469714	ENST00000485305		TCGA	LD	BRCA	TCGA-E9-A1R3-01A	REPS2	chrX	17121902	+	NHS	chrX	17737464	+
3UTR-3CDS	ENST00000410108	ENST00000262301		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
3UTR-3CDS	ENST00000410108	ENST00000399843		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
3UTR-intron	ENST00000410108	ENST00000543238		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
3UTR-5UTR	ENST00000410108	ENST00000568897		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
3UTR-intron	ENST00000410108	ENST00000568268		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
3UTR-intron	ENST00000410108	ENST00000539379		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000325147	ENST00000262301		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000325147	ENST00000399843		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000325147	ENST00000543238		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-5UTR	ENST00000325147	ENST00000568897		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000325147	ENST00000568268		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000325147	ENST00000539379		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000382762	ENST00000262301		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000382762	ENST00000399843		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000382762	ENST00000543238		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-5UTR	ENST00000382762	ENST00000568897		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000382762	ENST00000568268		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000382762	ENST00000539379		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000529614	ENST00000262301		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000529614	ENST00000399843		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000529614	ENST00000543238		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-5UTR	ENST00000529614	ENST00000568897		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000529614	ENST00000568268		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000529614	ENST00000539379		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000332865	ENST00000262301		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000332865	ENST00000399843		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000332865	ENST00000543238		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-5UTR	ENST00000332865	ENST00000568897		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000332865	ENST00000568268		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000332865	ENST00000539379		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000486280	ENST00000262301		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-3CDS	ENST00000486280	ENST00000399843		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000486280	ENST00000543238		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-5UTR	ENST00000486280	ENST00000568897		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000486280	ENST00000568268		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
intron-intron	ENST00000486280	ENST00000539379		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	BET1L	chr11	168943	-	LMF1	chr16	1004666	-
In-frame	ENST00000215567	ENST00000242783		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5CDS-intron	ENST00000215567	ENST00000587429		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5CDS-intron	ENST00000215567	ENST00000342216		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-3CDS	ENST00000596073	ENST00000242783		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000596073	ENST00000587429		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000596073	ENST00000342216		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-3CDS	ENST00000600083	ENST00000242783		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000600083	ENST00000587429		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000600083	ENST00000342216		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-3CDS	ENST00000436007	ENST00000242783		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000436007	ENST00000587429		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000436007	ENST00000342216		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
3UTR-3CDS	ENST00000596164	ENST00000242783		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
3UTR-intron	ENST00000596164	ENST00000587429		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
3UTR-intron	ENST00000596164	ENST00000342216		TCGA	LD	BRCA	TCGA-E9-A1R4-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5CDS-3UTR	ENST00000285039	ENST00000580436		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
5CDS-5UTR	ENST00000285039	ENST00000400606		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
5CDS-5UTR	ENST00000285039	ENST00000540035		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
5CDS-5UTR	ENST00000285039	ENST00000581619		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
5CDS-5UTR	ENST00000285039	ENST00000338387		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
5CDS-5UTR	ENST00000285039	ENST00000579494		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-3UTR	ENST00000324581	ENST00000580436		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000324581	ENST00000400606		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000324581	ENST00000540035		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000324581	ENST00000581619		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000324581	ENST00000338387		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000324581	ENST00000579494		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-3UTR	ENST00000592688	ENST00000580436		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000592688	ENST00000400606		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000592688	ENST00000540035		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000592688	ENST00000581619		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000592688	ENST00000338387		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000592688	ENST00000579494		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-3UTR	ENST00000587895	ENST00000580436		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000587895	ENST00000400606		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000587895	ENST00000540035		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000587895	ENST00000581619		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000587895	ENST00000338387		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
intron-5UTR	ENST00000587895	ENST00000579494		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	MYO5B	chr18	47721137	-	CLUL1	chr18	617988	+
Frame-shit	ENST00000356309	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
In-frame	ENST00000409423	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
intron-3CDS	ENST00000275830	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
Frame-shit	ENST00000409339	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
In-frame	ENST00000449727	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
intron-3CDS	ENST00000541468	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
intron-3CDS	ENST00000479022	ENST00000261435		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	NCAPG2	chr7	158494513	-	N4BP2	chr4	40154400	+
In-frame	ENST00000329286	ENST00000285039		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	RAB12	chr18	8624996	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000329286	ENST00000324581		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	RAB12	chr18	8624996	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000329286	ENST00000592688		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	RAB12	chr18	8624996	+	MYO5B	chr18	47527781	-
5CDS-intron	ENST00000329286	ENST00000587895		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	RAB12	chr18	8624996	+	MYO5B	chr18	47527781	-
5UTR-3CDS	ENST00000582337	ENST00000579455		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	ZNF407	chr18	72265173	+	C18orf63	chr18	72009267	+
intron-3CDS	ENST00000309902	ENST00000579455		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	ZNF407	chr18	72265173	+	C18orf63	chr18	72009267	+
intron-3CDS	ENST00000577538	ENST00000579455		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	ZNF407	chr18	72265173	+	C18orf63	chr18	72009267	+
intron-3CDS	ENST00000299687	ENST00000579455		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	ZNF407	chr18	72265173	+	C18orf63	chr18	72009267	+
intron-3CDS	ENST00000584235	ENST00000579455		TCGA	LD	BRCA	TCGA-E9-A1R6-01A	ZNF407	chr18	72265173	+	C18orf63	chr18	72009267	+
Frame-shit	ENST00000340748	ENST00000264834		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DNMT1	chr19	10279006	-	KLF1	chr19	12996956	-
Frame-shit	ENST00000540357	ENST00000264834		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DNMT1	chr19	10279006	-	KLF1	chr19	12996956	-
Frame-shit	ENST00000359526	ENST00000264834		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DNMT1	chr19	10279006	-	KLF1	chr19	12996956	-
intron-3CDS	ENST00000589538	ENST00000264834		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DNMT1	chr19	10279006	-	KLF1	chr19	12996956	-
5UTR-3CDS	ENST00000466152	ENST00000252996		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
5UTR-intron	ENST00000466152	ENST00000609045		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
Frame-shit	ENST00000371588	ENST00000252996		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
5CDS-intron	ENST00000371588	ENST00000609045		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
Frame-shit	ENST00000371582	ENST00000252996		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
5CDS-intron	ENST00000371582	ENST00000609045		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
Frame-shit	ENST00000371583	ENST00000252996		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
5CDS-intron	ENST00000371583	ENST00000609045		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	DPM1	chr20	49557402	-	TAF4	chr20	60589763	-
intron-3CDS	ENST00000437428	ENST00000263408		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	FAM157A	chr3	197896743	+	C9	chr5	39316131	-
intron-5UTR	ENST00000437428	ENST00000509186		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	FAM157A	chr3	197896743	+	C9	chr5	39316131	-
intron-intron	ENST00000244051	ENST00000374399		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	MOCS3	chr20	49578110	+	NIPAL3	chr1	24798588	+
intron-3UTR	ENST00000244051	ENST00000003912		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	MOCS3	chr20	49578110	+	NIPAL3	chr1	24798588	+
intron-intron	ENST00000244051	ENST00000358028		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	MOCS3	chr20	49578110	+	NIPAL3	chr1	24798588	+
intron-intron	ENST00000244051	ENST00000339255		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	MOCS3	chr20	49578110	+	NIPAL3	chr1	24798588	+
intron-intron	ENST00000244051	ENST00000428131		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	MOCS3	chr20	49578110	+	NIPAL3	chr1	24798588	+
intron-intron	ENST00000244051	ENST00000488155		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	MOCS3	chr20	49578110	+	NIPAL3	chr1	24798588	+
In-frame	ENST00000373703	ENST00000371714		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
In-frame	ENST00000373703	ENST00000371710		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
In-frame	ENST00000373703	ENST00000337809		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000435686		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000447887		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000453295		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000428468		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000530544		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000531828		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000361556		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-3UTR	ENST00000373703	ENST00000473207		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000373703	ENST00000462759		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-intron	ENST00000373703	ENST00000486942		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-3CDS	ENST00000492061	ENST00000371714		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-3CDS	ENST00000492061	ENST00000371710		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-3CDS	ENST00000492061	ENST00000337809		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000435686		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000447887		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000453295		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000428468		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000530544		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000531828		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000361556		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-3UTR	ENST00000492061	ENST00000473207		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-5UTR	ENST00000492061	ENST00000462759		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
intron-intron	ENST00000492061	ENST00000486942		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
In-frame	ENST00000440872	ENST00000371714		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
In-frame	ENST00000440872	ENST00000371710		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
In-frame	ENST00000440872	ENST00000337809		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000435686		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000447887		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000453295		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000428468		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000530544		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000531828		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000361556		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-3UTR	ENST00000440872	ENST00000473207		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-5UTR	ENST00000440872	ENST00000462759		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
5CDS-intron	ENST00000440872	ENST00000486942		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	PEF1	chr1	32110442	-	OSBPL9	chr1	52211208	+
In-frame	ENST00000250237	ENST00000420083		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000449870		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000318511		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000407004		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000589998		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000250241		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000592763		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000588657		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
In-frame	ENST00000250237	ENST00000590261		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
5CDS-intron	ENST00000250237	ENST00000586544		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000420083		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000449870		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000318511		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000407004		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000589998		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000250241		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000592763		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000588657		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3CDS	ENST00000585885	ENST00000590261		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-intron	ENST00000585885	ENST00000586544		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	QTRT1	chr19	10812930	+	ILF3	chr19	10791022	+
3UTR-3UTR	ENST00000453618	ENST00000481208		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	SEC22B	chr1	145104017	-	ACOT11	chr1	55062932	+
3UTR-3UTR	ENST00000453618	ENST00000343744		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	SEC22B	chr1	145104017	-	ACOT11	chr1	55062932	+
3UTR-3UTR	ENST00000453618	ENST00000371316		TCGA	LD	BRCA	TCGA-E9-A1R7-01A	SEC22B	chr1	145104017	-	ACOT11	chr1	55062932	+
Frame-shit	ENST00000394919	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000401998		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000361114		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000398761		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000418483		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000398763		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-intron	ENST00000492502	ENST00000604025		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000400473	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-3CDS	ENST00000400473	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-intron	ENST00000400473	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-intron	ENST00000400473	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-5UTR	ENST00000400473	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
In-frame	ENST00000256925	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
In-frame	ENST00000256925	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
5CDS-intron	ENST00000256925	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
5CDS-intron	ENST00000256925	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
5CDS-5UTR	ENST00000256925	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-3CDS	ENST00000585061	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-3CDS	ENST00000585061	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-intron	ENST00000585061	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-intron	ENST00000585061	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-5UTR	ENST00000585061	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-3CDS	ENST00000420687	ENST00000327155		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-3CDS	ENST00000420687	ENST00000399722		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-intron	ENST00000420687	ENST00000399725		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-intron	ENST00000420687	ENST00000360790		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-5UTR	ENST00000420687	ENST00000581687		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	CABLES1	chr18	20716571	+	RBBP8	chr18	20596791	+
intron-5UTR	ENST00000476233	ENST00000343815		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
intron-5UTR	ENST00000476233	ENST00000428931		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
intron-5UTR	ENST00000476233	ENST00000271877		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
intron-5UTR	ENST00000476233	ENST00000361546		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
intron-intron	ENST00000476233	ENST00000484819		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000354667	ENST00000343815		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000354667	ENST00000428931		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000354667	ENST00000271877		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000354667	ENST00000361546		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-intron	ENST00000354667	ENST00000484819		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000356674	ENST00000343815		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000356674	ENST00000428931		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000356674	ENST00000271877		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-5UTR	ENST00000356674	ENST00000361546		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
5CDS-intron	ENST00000356674	ENST00000484819		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	HNRNPA2B1	chr7	26240192	-	UBAP2L	chr1	154197560	+
Frame-shit	ENST00000372009	ENST00000288709		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
Frame-shit	ENST00000372009	ENST00000378412		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
Frame-shit	ENST00000372009	ENST00000502556		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
5CDS-intron	ENST00000372009	ENST00000511099		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
Frame-shit	ENST00000361297	ENST00000288709		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
Frame-shit	ENST00000361297	ENST00000378412		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
Frame-shit	ENST00000361297	ENST00000502556		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
5CDS-intron	ENST00000361297	ENST00000511099		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
intron-3CDS	ENST00000477968	ENST00000288709		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
intron-3CDS	ENST00000477968	ENST00000378412		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
intron-3CDS	ENST00000477968	ENST00000502556		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
intron-intron	ENST00000477968	ENST00000511099		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	MAST2	chr1	46493535	+	MMEL1	chr1	2543643	-
In-frame	ENST00000448838	ENST00000241052		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
5CDS-intron	ENST00000448838	ENST00000534710		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
In-frame	ENST00000227868	ENST00000241052		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
5CDS-intron	ENST00000227868	ENST00000534710		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
intron-3CDS	ENST00000430469	ENST00000241052		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
intron-intron	ENST00000430469	ENST00000534710		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
intron-3CDS	ENST00000477173	ENST00000241052		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
intron-intron	ENST00000477173	ENST00000534710		TCGA	LD	BRCA	TCGA-E9-A1RB-01A	PDHX	chr11	34999729	+	CAT	chr11	34477558	+
5CDS-intron	ENST00000379611	ENST00000507810		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
5CDS-intron	ENST00000379611	ENST00000261486		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
intron-intron	ENST00000512261	ENST00000507810		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
intron-intron	ENST00000512261	ENST00000261486		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
5UTR-intron	ENST00000506442	ENST00000507810		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
5UTR-intron	ENST00000506442	ENST00000261486		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
intron-intron	ENST00000395557	ENST00000507810		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
intron-intron	ENST00000395557	ENST00000261486		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
5UTR-intron	ENST00000503027	ENST00000507810		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
5UTR-intron	ENST00000503027	ENST00000261486		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	CCDC112	chr5	114632124	-	EPB41L4A	chr5	111643187	-
Frame-shit	ENST00000265342	ENST00000394817		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000265342	ENST00000265195		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
Frame-shit	ENST00000265342	ENST00000509534		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
5CDS-5UTR	ENST00000265342	ENST00000515008		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
intron-3CDS	ENST00000507112	ENST00000394817		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
intron-3CDS	ENST00000507112	ENST00000265195		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
intron-3CDS	ENST00000507112	ENST00000509534		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
intron-5UTR	ENST00000507112	ENST00000515008		TCGA	LD	BRCA	TCGA-E9-A1RC-01A	FSTL4	chr5	132648346	-	SIL1	chr5	138287573	-
5CDS-intron	ENST00000504487	ENST00000513032		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000504487	ENST00000303965		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000428116	ENST00000513032		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000428116	ENST00000303965		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000389609	ENST00000513032		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000389609	ENST00000303965		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000502801	ENST00000513032		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
5CDS-intron	ENST00000502801	ENST00000303965		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
intron-intron	ENST00000508236	ENST00000513032		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
intron-intron	ENST00000508236	ENST00000303965		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	CCDC149	chr4	24875303	-	ARAP2	chr4	36075445	-
intron-3CDS	ENST00000338368	ENST00000431231		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
intron-3CDS	ENST00000338368	ENST00000437668		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
intron-intron	ENST00000338368	ENST00000582409		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
intron-intron	ENST00000338368	ENST00000443378		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
Frame-shit	ENST00000314191	ENST00000431231		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
Frame-shit	ENST00000314191	ENST00000437668		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
5CDS-intron	ENST00000314191	ENST00000582409		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
5CDS-intron	ENST00000314191	ENST00000443378		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
5UTR-3CDS	ENST00000523565	ENST00000431231		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
5UTR-3CDS	ENST00000523565	ENST00000437668		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
5UTR-intron	ENST00000523565	ENST00000582409		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
5UTR-intron	ENST00000523565	ENST00000443378		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	PRKDC	chr8	48694723	-	ARHGAP23	chr17	36635677	+
3UTR-intron	ENST00000479389	ENST00000369760		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
3UTR-intron	ENST00000479389	ENST00000356489		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
3UTR-intron	ENST00000479389	ENST00000320393		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
3UTR-3UTR	ENST00000479389	ENST00000545529		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
3UTR-intron	ENST00000479389	ENST00000486968		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000259808	ENST00000369760		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000259808	ENST00000356489		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000259808	ENST00000320393		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000259808	ENST00000545529		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000259808	ENST00000486968		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000541791	ENST00000369760		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000541791	ENST00000356489		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000541791	ENST00000320393		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000541791	ENST00000545529		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000541791	ENST00000486968		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000380409	ENST00000369760		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000380409	ENST00000356489		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000380409	ENST00000320393		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000380409	ENST00000545529		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000380409	ENST00000486968		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	RIPK1	chr6	3085642	+	BCKDHB	chr6	80982852	+
intron-3CDS	ENST00000342228	ENST00000287272		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000342228	ENST00000453357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000342228	ENST00000404895		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000342228	ENST00000420357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000342228	ENST00000416672		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-intron	ENST00000342228	ENST00000449677		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520262	ENST00000287272		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520262	ENST00000453357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520262	ENST00000404895		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520262	ENST00000420357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520262	ENST00000416672		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-intron	ENST00000520262	ENST00000449677		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520179	ENST00000287272		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520179	ENST00000453357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520179	ENST00000404895		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520179	ENST00000420357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000520179	ENST00000416672		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-intron	ENST00000520179	ENST00000449677		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000523340	ENST00000287272		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000523340	ENST00000453357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000523340	ENST00000404895		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000523340	ENST00000420357		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-3CDS	ENST00000523340	ENST00000416672		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
intron-intron	ENST00000523340	ENST00000449677		TCGA	LD	BRCA	TCGA-E9-A1RE-01A	SLC20A2	chr8	42396681	-	UNC5D	chr8	35425616	+
5CDS-5UTR	ENST00000424296	ENST00000352896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000424296	ENST00000368475		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000424296	ENST00000338891		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000424296	ENST00000521531		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000424296	ENST00000522284		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5UTR-5UTR	ENST00000341338	ENST00000352896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5UTR-5UTR	ENST00000341338	ENST00000368475		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5UTR-5UTR	ENST00000341338	ENST00000338891		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5UTR-5UTR	ENST00000341338	ENST00000521531		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5UTR-5UTR	ENST00000341338	ENST00000522284		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000368948	ENST00000352896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000368948	ENST00000368475		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000368948	ENST00000338891		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000368948	ENST00000521531		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000368948	ENST00000522284		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000285397	ENST00000352896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000285397	ENST00000368475		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000285397	ENST00000338891		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000285397	ENST00000521531		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-5UTR	ENST00000285397	ENST00000522284		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
intron-5UTR	ENST00000355283	ENST00000352896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
intron-5UTR	ENST00000355283	ENST00000368475		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
intron-5UTR	ENST00000355283	ENST00000338891		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
intron-5UTR	ENST00000355283	ENST00000521531		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
intron-5UTR	ENST00000355283	ENST00000522284		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	AK9	chr6	109962721	-	FAM184A	chr6	119345978	-
5CDS-intron	ENST00000331825	ENST00000304056		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	FTL	chr19	49469663	+	KBTBD2	chr7	32933708	-
5CDS-intron	ENST00000331825	ENST00000485611		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	FTL	chr19	49469663	+	KBTBD2	chr7	32933708	-
intron-intron	ENST00000225983	ENST00000350896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000225983	ENST00000262101		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000225983	ENST00000445506		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000225983	ENST00000355282		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000225983	ENST00000518343		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000225983	ENST00000381998		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000225983	ENST00000536385		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000350896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000262101		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000445506		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000355282		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000518343		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000381998		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000393622	ENST00000536385		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000350896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000262101		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000445506		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000355282		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000518343		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000381998		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000336057	ENST00000536385		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000350896		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000262101		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000445506		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000355282		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000518343		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000381998		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
intron-intron	ENST00000586802	ENST00000536385		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	HDAC5	chr17	42155965	-	MSR1	chr8	15978115	-
In-frame	ENST00000378526	ENST00000520356		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
In-frame	ENST00000378526	ENST00000520727		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000378526	ENST00000429442		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000378526	ENST00000377838		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000378526	ENST00000520214		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000378526	ENST00000523399		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000378526	ENST00000517307		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
In-frame	ENST00000262327	ENST00000520356		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
In-frame	ENST00000262327	ENST00000520727		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000262327	ENST00000429442		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000262327	ENST00000377838		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000262327	ENST00000520214		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000262327	ENST00000523399		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
5CDS-intron	ENST00000262327	ENST00000517307		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-3CDS	ENST00000586407	ENST00000520356		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-3CDS	ENST00000586407	ENST00000520727		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-intron	ENST00000586407	ENST00000429442		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-intron	ENST00000586407	ENST00000377838		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-intron	ENST00000586407	ENST00000520214		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-intron	ENST00000586407	ENST00000523399		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
intron-intron	ENST00000586407	ENST00000517307		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	LIG3	chr17	33321450	+	ZFAT	chr8	135490964	-
Frame-shit	ENST00000368468	ENST00000369037		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MAN1A1	chr6	119669628	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000368468	ENST00000453874		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MAN1A1	chr6	119669628	-	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000368468	ENST00000369031		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MAN1A1	chr6	119669628	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000368466	ENST00000369037		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MAN1A1	chr6	119669628	-	PDSS2	chr6	107475981	-
In-frame	ENST00000368466	ENST00000453874		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MAN1A1	chr6	119669628	-	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000368466	ENST00000369031		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MAN1A1	chr6	119669628	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000358807	ENST00000424296		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358807	ENST00000341338		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358807	ENST00000368948		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358807	ENST00000285397		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358807	ENST00000355283		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
Frame-shit	ENST00000358577	ENST00000424296		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358577	ENST00000341338		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358577	ENST00000368948		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358577	ENST00000285397		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000358577	ENST00000355283		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
Frame-shit	ENST00000368952	ENST00000424296		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000368952	ENST00000341338		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000368952	ENST00000368948		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000368952	ENST00000285397		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5CDS-intron	ENST00000368952	ENST00000355283		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
intron-3CDS	ENST00000483856	ENST00000424296		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
intron-intron	ENST00000483856	ENST00000341338		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
intron-intron	ENST00000483856	ENST00000368948		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
intron-intron	ENST00000483856	ENST00000285397		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
intron-intron	ENST00000483856	ENST00000355283		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	MICAL1	chr6	109771173	-	AK9	chr6	109819168	-
5UTR-5UTR	ENST00000542413	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
5UTR-5UTR	ENST00000542413	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
5UTR-5UTR	ENST00000542413	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
5UTR-5UTR	ENST00000542413	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
3UTR-5UTR	ENST00000600978	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
3UTR-5UTR	ENST00000600978	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
3UTR-5UTR	ENST00000600978	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
3UTR-5UTR	ENST00000600978	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000598168	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000598168	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000598168	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000598168	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000411902	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000411902	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000411902	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000411902	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000253727	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000253727	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000253727	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000253727	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000599105	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000599105	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000599105	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000599105	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000593926	ENST00000321287		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000593926	ENST00000403906		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000593926	ENST00000601151		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
intron-5UTR	ENST00000593926	ENST00000327920		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	NR1H2	chr19	50833052	+	ZNF610	chr19	52850960	+
Frame-shit	ENST00000193322	ENST00000368491		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
Frame-shit	ENST00000193322	ENST00000368488		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
5CDS-5UTR	ENST00000193322	ENST00000360290		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
5CDS-5UTR	ENST00000193322	ENST00000392500		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
5CDS-5UTR	ENST00000193322	ENST00000419517		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
5CDS-intron	ENST00000193322	ENST00000472713		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
intron-3CDS	ENST00000492130	ENST00000368491		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
intron-3CDS	ENST00000492130	ENST00000368488		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
intron-5UTR	ENST00000492130	ENST00000360290		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
intron-5UTR	ENST00000492130	ENST00000392500		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
intron-5UTR	ENST00000492130	ENST00000419517		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
intron-intron	ENST00000492130	ENST00000472713		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	OSTM1	chr6	108395454	-	CEP85L	chr6	118953774	-
5CDS-3UTR	ENST00000369037	ENST00000317357		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	PDSS2	chr6	107655402	-	SOBP	chr6	107979411	+
5CDS-intron	ENST00000369037	ENST00000494935		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	PDSS2	chr6	107655402	-	SOBP	chr6	107979411	+
5CDS-3UTR	ENST00000453874	ENST00000317357		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	PDSS2	chr6	107655402	-	SOBP	chr6	107979411	+
5CDS-intron	ENST00000453874	ENST00000494935		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	PDSS2	chr6	107655402	-	SOBP	chr6	107979411	+
5CDS-3UTR	ENST00000369031	ENST00000317357		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	PDSS2	chr6	107655402	-	SOBP	chr6	107979411	+
5CDS-intron	ENST00000369031	ENST00000494935		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	PDSS2	chr6	107655402	-	SOBP	chr6	107979411	+
5CDS-5UTR	ENST00000466444	ENST00000392587		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000466444	ENST00000392586		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000466444	ENST00000392588		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000466444	ENST00000392589		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000466444	ENST00000359451		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000392526	ENST00000392587		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000392526	ENST00000392586		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000392526	ENST00000392588		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000392526	ENST00000392589		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000392526	ENST00000359451		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000487832	ENST00000392587		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000487832	ENST00000392586		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000487832	ENST00000392588		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000487832	ENST00000392589		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
5UTR-5UTR	ENST00000487832	ENST00000359451		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
3UTR-5UTR	ENST00000517800	ENST00000392587		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
3UTR-5UTR	ENST00000517800	ENST00000392586		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
3UTR-5UTR	ENST00000517800	ENST00000392588		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
3UTR-5UTR	ENST00000517800	ENST00000392589		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
3UTR-5UTR	ENST00000517800	ENST00000359451		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	RWDD1	chr6	116892818	+	WASF1	chr6	110448832	-
In-frame	ENST00000262013	ENST00000240364		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000262013	ENST00000513602		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000262013	ENST00000514018		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
In-frame	ENST00000505279	ENST00000240364		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000505279	ENST00000513602		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000505279	ENST00000514018		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
In-frame	ENST00000357122	ENST00000240364		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000357122	ENST00000513602		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
5CDS-5UTR	ENST00000357122	ENST00000514018		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
intron-3CDS	ENST00000509724	ENST00000240364		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
intron-5UTR	ENST00000509724	ENST00000513602		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
intron-5UTR	ENST00000509724	ENST00000514018		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
intron-3CDS	ENST00000510283	ENST00000240364		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
intron-5UTR	ENST00000510283	ENST00000513602		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
intron-5UTR	ENST00000510283	ENST00000514018		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SPAG9	chr17	49197715	-	FAM117A	chr17	47797798	-
In-frame	ENST00000264659	ENST00000158009		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SRCIN1	chr17	36717699	-	FNDC8	chr17	33454061	+
In-frame	ENST00000578925	ENST00000158009		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SRCIN1	chr17	36717699	-	FNDC8	chr17	33454061	+
5UTR-3CDS	ENST00000398579	ENST00000158009		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SRCIN1	chr17	36717699	-	FNDC8	chr17	33454061	+
Frame-shit	ENST00000599117	ENST00000222345		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
5CDS-intron	ENST00000599117	ENST00000476317		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
Frame-shit	ENST00000432763	ENST00000222345		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
5CDS-intron	ENST00000432763	ENST00000476317		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
Frame-shit	ENST00000402194	ENST00000222345		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
5CDS-intron	ENST00000402194	ENST00000476317		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
Frame-shit	ENST00000359191	ENST00000222345		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
5CDS-intron	ENST00000359191	ENST00000476317		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
Frame-shit	ENST00000598725	ENST00000222345		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
5CDS-intron	ENST00000598725	ENST00000476317		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	SUPT5H	chr19	39936605	+	SIPA1L3	chr19	38643480	+
5CDS-intron	ENST00000582809	ENST00000250360		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000582809	ENST00000440804		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
intron-intron	ENST00000577616	ENST00000250360		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
intron-intron	ENST00000577616	ENST00000440804		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000326270	ENST00000250360		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000326270	ENST00000440804		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000346027	ENST00000250360		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000346027	ENST00000440804		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000343388	ENST00000250360		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000343388	ENST00000440804		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000542523	ENST00000250360		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
5CDS-intron	ENST00000542523	ENST00000440804		TCGA	LD	BRCA	TCGA-E9-A1RF-01A	TLK2	chr17	60678181	+	SIGLEC9	chr19	51639219	+
intron-3UTR	ENST00000608999	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000608999	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000336894	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000336894	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000480184	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000480184	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000356764	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000356764	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000290419	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000290419	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000391959	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000391959	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000367270	ENST00000367287		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3UTR	ENST00000367270	ENST00000482943		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	PPP1R12B	chr1	202412255	+	TIMM17A	chr1	201939316	+
intron-3CDS	ENST00000336451	ENST00000367255		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-3CDS	ENST00000336451	ENST00000356820		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-3CDS	ENST00000336451	ENST00000423061		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-3CDS	ENST00000336451	ENST00000448038		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-3CDS	ENST00000336451	ENST00000341594		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-3CDS	ENST00000336451	ENST00000265368		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-intron	ENST00000336451	ENST00000367253		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-intron	ENST00000336451	ENST00000367248		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-intron	ENST00000336451	ENST00000413186		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-intron	ENST00000336451	ENST00000466159		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-intron	ENST00000336451	ENST00000539504		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-5UTR	ENST00000336451	ENST00000347037		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-5UTR	ENST00000336451	ENST00000354674		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
intron-intron	ENST00000336451	ENST00000495090		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
Frame-shit	ENST00000367303	ENST00000367255		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
Frame-shit	ENST00000367303	ENST00000356820		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
Frame-shit	ENST00000367303	ENST00000423061		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
Frame-shit	ENST00000367303	ENST00000448038		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
Frame-shit	ENST00000367303	ENST00000341594		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
Frame-shit	ENST00000367303	ENST00000265368		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-intron	ENST00000367303	ENST00000367253		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-intron	ENST00000367303	ENST00000367248		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-intron	ENST00000367303	ENST00000413186		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-intron	ENST00000367303	ENST00000466159		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-intron	ENST00000367303	ENST00000539504		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-5UTR	ENST00000367303	ENST00000347037		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-5UTR	ENST00000367303	ENST00000354674		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5CDS-intron	ENST00000367303	ENST00000495090		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-3CDS	ENST00000491268	ENST00000367255		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-3CDS	ENST00000491268	ENST00000356820		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-3CDS	ENST00000491268	ENST00000423061		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-3CDS	ENST00000491268	ENST00000448038		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-3CDS	ENST00000491268	ENST00000341594		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-3CDS	ENST00000491268	ENST00000265368		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-intron	ENST00000491268	ENST00000367253		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-intron	ENST00000491268	ENST00000367248		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-intron	ENST00000491268	ENST00000413186		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-intron	ENST00000491268	ENST00000466159		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-intron	ENST00000491268	ENST00000539504		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-5UTR	ENST00000491268	ENST00000347037		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-5UTR	ENST00000491268	ENST00000354674		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
5UTR-intron	ENST00000491268	ENST00000495090		TCGA	LD	BRCA	TCGA-E9-A1RG-01A	RMND1	chr6	151766443	-	SYNE1	chr6	152470803	-
In-frame	ENST00000498623	ENST00000357716		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000498623	ENST00000486284		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000498623	ENST00000389336		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000498623	ENST00000402647		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000498623	ENST00000403881		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
5CDS-intron	ENST00000498623	ENST00000458641		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000287613	ENST00000357716		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000287613	ENST00000486284		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000287613	ENST00000389336		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000287613	ENST00000402647		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000287613	ENST00000403881		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
5CDS-intron	ENST00000287613	ENST00000458641		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000397261	ENST00000357716		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000397261	ENST00000486284		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000397261	ENST00000389336		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000397261	ENST00000402647		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000397261	ENST00000403881		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
5CDS-intron	ENST00000397261	ENST00000458641		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000433034	ENST00000357716		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000433034	ENST00000486284		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000433034	ENST00000389336		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000433034	ENST00000402647		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
In-frame	ENST00000433034	ENST00000403881		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
5CDS-intron	ENST00000433034	ENST00000458641		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ARPC4	chr3	9845697	+	GRM7	chr3	7188139	+
5CDS-intron	ENST00000225792	ENST00000529556		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
5CDS-3UTR	ENST00000225792	ENST00000250693		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
5CDS-intron	ENST00000450599	ENST00000529556		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
5CDS-3UTR	ENST00000450599	ENST00000250693		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
5CDS-intron	ENST00000578804	ENST00000529556		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
5CDS-3UTR	ENST00000578804	ENST00000250693		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
intron-intron	ENST00000580026	ENST00000529556		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
intron-3UTR	ENST00000580026	ENST00000250693		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DDX5	chr17	62499548	-	ART1	chr11	3685525	+
In-frame	ENST00000523492	ENST00000259486		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000523492	ENST00000427067		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000523492	ENST00000522167		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000523492	ENST00000522826		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000523492	ENST00000075322		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
5CDS-intron	ENST00000523492	ENST00000518109		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000286234	ENST00000259486		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000286234	ENST00000427067		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000286234	ENST00000522167		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000286234	ENST00000522826		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
In-frame	ENST00000286234	ENST00000075322		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
5CDS-intron	ENST00000286234	ENST00000518109		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
intron-3CDS	ENST00000518057	ENST00000259486		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
intron-3CDS	ENST00000518057	ENST00000427067		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
intron-3CDS	ENST00000518057	ENST00000522167		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
intron-3CDS	ENST00000518057	ENST00000522826		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
intron-3CDS	ENST00000518057	ENST00000075322		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
intron-intron	ENST00000518057	ENST00000518109		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	DEPTOR	chr8	120977650	+	ENPP2	chr8	120577195	-
Frame-shit	ENST00000360289	ENST00000517820		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
In-frame	ENST00000360289	ENST00000520733		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000360289	ENST00000309822		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000360289	ENST00000357148		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000448642	ENST00000517820		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
In-frame	ENST00000448642	ENST00000520733		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000448642	ENST00000309822		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000448642	ENST00000357148		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000404387	ENST00000517820		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
In-frame	ENST00000404387	ENST00000520733		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000404387	ENST00000309822		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000404387	ENST00000357148		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000298649	ENST00000517820		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
In-frame	ENST00000298649	ENST00000520733		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000298649	ENST00000309822		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000298649	ENST00000357148		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000359426	ENST00000517820		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
In-frame	ENST00000359426	ENST00000520733		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000359426	ENST00000309822		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000359426	ENST00000357148		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
3UTR-3CDS	ENST00000494253	ENST00000517820		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
3UTR-3CDS	ENST00000494253	ENST00000520733		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
3UTR-intron	ENST00000494253	ENST00000309822		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
3UTR-intron	ENST00000494253	ENST00000357148		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	HK1	chr10	71146174	+	UTP23	chr8	117861127	+
In-frame	ENST00000373053	ENST00000397661		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000373053	ENST00000592199		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000373053	ENST00000587760		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000373053	ENST00000585575		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000373053	ENST00000360105		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000373053	ENST00000588228		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000373053	ENST00000587260		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000373053	ENST00000358552		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000373053	ENST00000588680		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000357157	ENST00000397661		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000357157	ENST00000592199		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000357157	ENST00000587760		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000357157	ENST00000585575		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
In-frame	ENST00000357157	ENST00000360105		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000357157	ENST00000588228		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000357157	ENST00000587260		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000357157	ENST00000358552		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000357157	ENST00000588680		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000536019	ENST00000397661		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000536019	ENST00000592199		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000536019	ENST00000587760		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000536019	ENST00000585575		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000536019	ENST00000360105		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000536019	ENST00000588228		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000536019	ENST00000587260		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000536019	ENST00000358552		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-intron	ENST00000536019	ENST00000588680		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000605416	ENST00000397661		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000605416	ENST00000592199		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000605416	ENST00000587760		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000605416	ENST00000585575		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000605416	ENST00000360105		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000605416	ENST00000588228		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000605416	ENST00000587260		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000605416	ENST00000358552		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
intron-intron	ENST00000605416	ENST00000588680		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	MCU	chr10	74452059	+	NFIX	chr19	13135835	+
5UTR-intron	ENST00000400314	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
5UTR-intron	ENST00000400314	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
5UTR-intron	ENST00000400314	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
5UTR-3UTR	ENST00000400314	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400310	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400310	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400310	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-3UTR	ENST00000400310	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000449640	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000449640	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000449640	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-3UTR	ENST00000449640	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400309	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400309	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400309	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-3UTR	ENST00000400309	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400308	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400308	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400308	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-3UTR	ENST00000400308	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400304	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400304	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000400304	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-3UTR	ENST00000400304	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000423045	ENST00000448838		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000423045	ENST00000227868		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-intron	ENST00000423045	ENST00000430469		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
intron-3UTR	ENST00000423045	ENST00000477173		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PCBP3	chr21	47155343	+	PDHX	chr11	35041755	+
5CDS-5UTR	ENST00000511072	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000511072	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000511072	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000511072	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000511072	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000511072	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000442529	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000442529	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000442529	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000442529	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000442529	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000442529	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378398	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378398	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378398	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378398	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378398	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000378398	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000441472	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000441472	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000441472	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000441472	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000441472	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000441472	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378391	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378391	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378391	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378391	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000378391	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000378391	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000514189	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000514189	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000514189	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000514189	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000514189	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000514189	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000270722	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000270722	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000270722	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000270722	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000270722	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
5CDS-intron	ENST00000270722	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
intron-5UTR	ENST00000512462	ENST00000415149		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
intron-5UTR	ENST00000512462	ENST00000402543		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
intron-5UTR	ENST00000512462	ENST00000325805		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
intron-5UTR	ENST00000512462	ENST00000416476		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
intron-5UTR	ENST00000512462	ENST00000406780		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
intron-intron	ENST00000512462	ENST00000473542		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	PRDM16	chr1	2985860	+	BBX	chr3	107364683	+
Frame-shit	ENST00000487519	ENST00000280772		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
5CDS-intron	ENST00000487519	ENST00000373827		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
5CDS-intron	ENST00000487519	ENST00000355288		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
5CDS-intron	ENST00000487519	ENST00000503366		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
5CDS-intron	ENST00000487519	ENST00000510382		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
5CDS-intron	ENST00000487519	ENST00000460468		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
3UTR-3CDS	ENST00000373899	ENST00000280772		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
3UTR-intron	ENST00000373899	ENST00000373827		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
3UTR-intron	ENST00000373899	ENST00000355288		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
3UTR-intron	ENST00000373899	ENST00000503366		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
3UTR-intron	ENST00000373899	ENST00000510382		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
3UTR-intron	ENST00000373899	ENST00000460468		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
intron-3CDS	ENST00000373895	ENST00000280772		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
intron-intron	ENST00000373895	ENST00000373827		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
intron-intron	ENST00000373895	ENST00000355288		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
intron-intron	ENST00000373895	ENST00000503366		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
intron-intron	ENST00000373895	ENST00000510382		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
intron-intron	ENST00000373895	ENST00000460468		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	TFAM	chr10	60150620	+	ANK3	chr10	61828635	-
5UTR-3CDS	ENST00000334512	ENST00000404583		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
5UTR-3CDS	ENST00000334512	ENST00000314567		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
5UTR-3UTR	ENST00000334512	ENST00000404744		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
5UTR-5UTR	ENST00000334512	ENST00000475605		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-3CDS	ENST00000478357	ENST00000404583		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-3CDS	ENST00000478357	ENST00000314567		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-3UTR	ENST00000478357	ENST00000404744		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-5UTR	ENST00000478357	ENST00000475605		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-3CDS	ENST00000446377	ENST00000404583		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-3CDS	ENST00000446377	ENST00000314567		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-3UTR	ENST00000446377	ENST00000404744		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
intron-5UTR	ENST00000446377	ENST00000475605		TCGA	LD	BRCA	TCGA-E9-A1RH-01A	ZMIZ1	chr10	80921890	+	CDPF1	chr22	46641135	-
5CDS-intron	ENST00000397097	ENST00000409063		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5CDS-intron	ENST00000397097	ENST00000312428		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5CDS-intron	ENST00000397097	ENST00000410072		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5CDS-intron	ENST00000397097	ENST00000484183		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000343776	ENST00000409063		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000343776	ENST00000312428		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000343776	ENST00000410072		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000343776	ENST00000484183		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000608949	ENST00000409063		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000608949	ENST00000312428		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000608949	ENST00000410072		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5UTR-intron	ENST00000608949	ENST00000484183		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
3UTR-intron	ENST00000465266	ENST00000409063		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
3UTR-intron	ENST00000465266	ENST00000312428		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
3UTR-intron	ENST00000465266	ENST00000410072		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
3UTR-intron	ENST00000465266	ENST00000484183		TCGA	LD	BRCA	TCGA-E9-A1RI-01A	ZNF678	chr1	227751425	+	DNAH7	chr2	196791290	-
5CDS-5UTR	ENST00000262189	ENST00000256951		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-intron	ENST00000262189	ENST00000537612		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-intron	ENST00000262189	ENST00000431267		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-intron	ENST00000262189	ENST00000544053		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-3UTR	ENST00000262189	ENST00000542289		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-5UTR	ENST00000262189	ENST00000396301		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-5UTR	ENST00000355193	ENST00000256951		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-intron	ENST00000355193	ENST00000537612		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-intron	ENST00000355193	ENST00000431267		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-intron	ENST00000355193	ENST00000544053		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-3UTR	ENST00000355193	ENST00000542289		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
5CDS-5UTR	ENST00000355193	ENST00000396301		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-5UTR	ENST00000485655	ENST00000256951		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-intron	ENST00000485655	ENST00000537612		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-intron	ENST00000485655	ENST00000431267		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-intron	ENST00000485655	ENST00000544053		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-3UTR	ENST00000485655	ENST00000542289		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-5UTR	ENST00000485655	ENST00000396301		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-5UTR	ENST00000485241	ENST00000256951		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-intron	ENST00000485241	ENST00000537612		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-intron	ENST00000485241	ENST00000431267		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-intron	ENST00000485241	ENST00000544053		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-3UTR	ENST00000485241	ENST00000542289		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
intron-5UTR	ENST00000485241	ENST00000396301		TCGA	LD	BRCA	TCGA-E9-A227-01A	KMT2C	chr7	151917608	-	EMP1	chr12	13364403	+
Frame-shit	ENST00000491148	ENST00000539261		TCGA	LD	BRCA	TCGA-E9-A228-01A	CPB1	chr3	148559711	+	MGP	chr12	15035214	-
Frame-shit	ENST00000491148	ENST00000228938		TCGA	LD	BRCA	TCGA-E9-A228-01A	CPB1	chr3	148559711	+	MGP	chr12	15035214	-
Frame-shit	ENST00000282957	ENST00000539261		TCGA	LD	BRCA	TCGA-E9-A228-01A	CPB1	chr3	148559711	+	MGP	chr12	15035214	-
Frame-shit	ENST00000282957	ENST00000228938		TCGA	LD	BRCA	TCGA-E9-A228-01A	CPB1	chr3	148559711	+	MGP	chr12	15035214	-
intron-3CDS	ENST00000498639	ENST00000539261		TCGA	LD	BRCA	TCGA-E9-A228-01A	CPB1	chr3	148559711	+	MGP	chr12	15035214	-
intron-3CDS	ENST00000498639	ENST00000228938		TCGA	LD	BRCA	TCGA-E9-A228-01A	CPB1	chr3	148559711	+	MGP	chr12	15035214	-
intron-5UTR	ENST00000225893	ENST00000264645		TCGA	LD	BRCA	TCGA-E9-A228-01A	HNF1B	chr17	36047020	-	CASC3	chr17	38296774	+
intron-5UTR	ENST00000561193	ENST00000264645		TCGA	LD	BRCA	TCGA-E9-A228-01A	HNF1B	chr17	36047020	-	CASC3	chr17	38296774	+
intron-5UTR	ENST00000560016	ENST00000264645		TCGA	LD	BRCA	TCGA-E9-A228-01A	HNF1B	chr17	36047020	-	CASC3	chr17	38296774	+
intron-5UTR	ENST00000427275	ENST00000264645		TCGA	LD	BRCA	TCGA-E9-A228-01A	HNF1B	chr17	36047020	-	CASC3	chr17	38296774	+
5CDS-5UTR	ENST00000372725	ENST00000514278		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372725	ENST00000353507		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372725	ENST00000505374		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372725	ENST00000508580		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372725	ENST00000354991		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-intron	ENST00000372725	ENST00000511853		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372724	ENST00000514278		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372724	ENST00000353507		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372724	ENST00000505374		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372724	ENST00000508580		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372724	ENST00000354991		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-intron	ENST00000372724	ENST00000511853		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000287239	ENST00000514278		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000287239	ENST00000353507		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000287239	ENST00000505374		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000287239	ENST00000508580		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000287239	ENST00000354991		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-intron	ENST00000287239	ENST00000511853		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372714	ENST00000514278		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372714	ENST00000353507		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372714	ENST00000505374		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372714	ENST00000508580		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372714	ENST00000354991		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-intron	ENST00000372714	ENST00000511853		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372711	ENST00000514278		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372711	ENST00000353507		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000372711	ENST00000505374		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372711	ENST00000508580		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000372711	ENST00000354991		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5CDS-intron	ENST00000372711	ENST00000511853		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
3UTR-5UTR	ENST00000490365	ENST00000514278		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
3UTR-5UTR	ENST00000490365	ENST00000353507		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
3UTR-5UTR	ENST00000490365	ENST00000505374		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
3UTR-3UTR	ENST00000490365	ENST00000508580		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
3UTR-3UTR	ENST00000490365	ENST00000354991		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
3UTR-intron	ENST00000490365	ENST00000511853		TCGA	LD	BRCA	TCGA-E9-A228-01A	KAT6B	chr10	76748870	+	DDX4	chr5	55034778	+
5UTR-5UTR	ENST00000435085	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000435085	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000435085	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000435085	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000307198	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000307198	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000307198	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000307198	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000419228	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000419228	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000419228	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000419228	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000447974	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000447974	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000447974	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000447974	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000289488	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000289488	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000289488	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000289488	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000539271	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000539271	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000539271	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000539271	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000423494	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000423494	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000423494	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000423494	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000539587	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000539587	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000539587	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000539587	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000538478	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000538478	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000538478	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000538478	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000324866	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000324866	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000324866	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000324866	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000439209	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-5UTR	ENST00000439209	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000439209	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
5UTR-intron	ENST00000439209	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-5UTR	ENST00000541614	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-5UTR	ENST00000541614	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-intron	ENST00000541614	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-intron	ENST00000541614	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-5UTR	ENST00000536917	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-5UTR	ENST00000536917	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-intron	ENST00000536917	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-intron	ENST00000536917	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-5UTR	ENST00000440313	ENST00000312293		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-5UTR	ENST00000440313	ENST00000393681		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-intron	ENST00000440313	ENST00000393679		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
intron-intron	ENST00000440313	ENST00000393676		TCGA	LD	BRCA	TCGA-E9-A228-01A	LRTOMT	chr11	71791931	+	FOLR1	chr11	71900709	+
In-frame	ENST00000392328	ENST00000320717		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
In-frame	ENST00000392328	ENST00000338435		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000392328	ENST00000409626		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000392328	ENST00000409428		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000392328	ENST00000409215		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000392328	ENST00000471443		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
In-frame	ENST00000281416	ENST00000320717		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
In-frame	ENST00000281416	ENST00000338435		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000281416	ENST00000409626		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000281416	ENST00000409428		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000281416	ENST00000409215		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-intron	ENST00000281416	ENST00000471443		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-3CDS	ENST00000535751	ENST00000320717		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-3CDS	ENST00000535751	ENST00000338435		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000535751	ENST00000409626		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000535751	ENST00000409428		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000535751	ENST00000409215		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000535751	ENST00000471443		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-3CDS	ENST00000489793	ENST00000320717		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-3CDS	ENST00000489793	ENST00000338435		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000489793	ENST00000409626		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000489793	ENST00000409428		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000489793	ENST00000409215		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
intron-intron	ENST00000489793	ENST00000471443		TCGA	LD	BRCA	TCGA-E9-A228-01A	MFSD6	chr2	191302287	+	GLS	chr2	191759878	+
5CDS-5UTR	ENST00000416426	ENST00000258991		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000416426	ENST00000583097		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000416426	ENST00000584379		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000416426	ENST00000581812		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000284073	ENST00000258991		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000284073	ENST00000583097		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000284073	ENST00000584379		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000284073	ENST00000581812		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000322684	ENST00000258991		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000322684	ENST00000583097		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-5UTR	ENST00000322684	ENST00000584379		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
5CDS-intron	ENST00000322684	ENST00000581812		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000442934	ENST00000258991		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000442934	ENST00000583097		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000442934	ENST00000584379		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-intron	ENST00000442934	ENST00000581812		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000579180	ENST00000258991		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000579180	ENST00000583097		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000579180	ENST00000584379		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-intron	ENST00000579180	ENST00000581812		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000579505	ENST00000258991		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000579505	ENST00000583097		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-5UTR	ENST00000579505	ENST00000584379		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
intron-intron	ENST00000579505	ENST00000581812		TCGA	LD	BRCA	TCGA-E9-A228-01A	MSI2	chr17	55339553	+	TEX2	chr17	62291602	-
In-frame	ENST00000354764	ENST00000331683		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
In-frame	ENST00000354764	ENST00000374309		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000354764	ENST00000432529		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000354764	ENST00000413312		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000354764	ENST00000272898		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000354764	ENST00000447990		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000354764	ENST00000414961		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
In-frame	ENST00000409475	ENST00000331683		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
In-frame	ENST00000409475	ENST00000374309		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409475	ENST00000432529		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409475	ENST00000413312		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409475	ENST00000272898		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409475	ENST00000447990		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409475	ENST00000414961		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
In-frame	ENST00000409188	ENST00000331683		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
In-frame	ENST00000409188	ENST00000374309		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409188	ENST00000432529		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409188	ENST00000413312		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409188	ENST00000272898		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409188	ENST00000447990		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000409188	ENST00000414961		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-3CDS	ENST00000485830	ENST00000331683		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-3CDS	ENST00000485830	ENST00000374309		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-intron	ENST00000485830	ENST00000432529		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-intron	ENST00000485830	ENST00000413312		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-intron	ENST00000485830	ENST00000272898		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-intron	ENST00000485830	ENST00000447990		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-intron	ENST00000485830	ENST00000414961		TCGA	LD	BRCA	TCGA-E9-A228-01A	PGAP1	chr2	197781142	-	SPAG16	chr2	215274864	+
5UTR-3CDS	ENST00000261716	ENST00000394906		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000261716	ENST00000394908		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000261716	ENST00000585169		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000261716	ENST00000577789		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000536202	ENST00000394906		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000536202	ENST00000394908		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-3CDS	ENST00000536202	ENST00000585169		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
5UTR-intron	ENST00000536202	ENST00000577789		TCGA	LD	BRCA	TCGA-E9-A228-01A	TAOK1	chr17	27718042	+	FLOT2	chr17	27216044	-
3UTR-3CDS	ENST00000494757	ENST00000261712		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
3UTR-3CDS	ENST00000494757	ENST00000457654		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000323571	ENST00000261712		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000323571	ENST00000457654		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000585043	ENST00000261712		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000585043	ENST00000457654		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000394103	ENST00000261712		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000394103	ENST00000457654		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000536600	ENST00000261712		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000536600	ENST00000457654		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000583130	ENST00000261712		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
Frame-shit	ENST00000583130	ENST00000457654		TCGA	LD	BRCA	TCGA-E9-A228-01A	WIPF2	chr17	38430251	+	PSMD11	chr17	30806269	+
In-frame	ENST00000369043	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
5CDS-3UTR	ENST00000369043	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3CDS	ENST00000535655	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3UTR	ENST00000535655	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
In-frame	ENST00000224652	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
5CDS-3UTR	ENST00000224652	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3CDS	ENST00000369040	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3UTR	ENST00000369040	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
In-frame	ENST00000540606	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
5CDS-3UTR	ENST00000540606	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
5UTR-3CDS	ENST00000543447	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
5UTR-3UTR	ENST00000543447	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3CDS	ENST00000481784	ENST00000359653		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3UTR	ENST00000481784	ENST00000471421		TCGA	LD	BRCA	TCGA-E9-A229-01A	ATE1	chr10	123681864	-	ZRANB1	chr10	126670278	+
intron-3CDS	ENST00000552951	ENST00000392837		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-3CDS	ENST00000552951	ENST00000392839		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-5UTR	ENST00000552951	ENST00000355478		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-intron	ENST00000552951	ENST00000549643		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-3CDS	ENST00000280749	ENST00000392837		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-3CDS	ENST00000280749	ENST00000392839		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-5UTR	ENST00000280749	ENST00000355478		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
intron-intron	ENST00000280749	ENST00000549643		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
3UTR-3CDS	ENST00000548583	ENST00000392837		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
3UTR-3CDS	ENST00000548583	ENST00000392839		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
3UTR-5UTR	ENST00000548583	ENST00000355478		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
3UTR-intron	ENST00000548583	ENST00000549643		TCGA	LD	BRCA	TCGA-E9-A229-01A	C12orf45	chr12	105389804	+	RIC8B	chr12	107177775	+
Frame-shit	ENST00000225964	ENST00000570308		TCGA	LD	BRCA	TCGA-E9-A229-01A	COL1A1	chr17	48271710	-	MMP2	chr16	55525713	+
Frame-shit	ENST00000225964	ENST00000219070		TCGA	LD	BRCA	TCGA-E9-A229-01A	COL1A1	chr17	48271710	-	MMP2	chr16	55525713	+
Frame-shit	ENST00000225964	ENST00000543485		TCGA	LD	BRCA	TCGA-E9-A229-01A	COL1A1	chr17	48271710	-	MMP2	chr16	55525713	+
Frame-shit	ENST00000225964	ENST00000437642		TCGA	LD	BRCA	TCGA-E9-A229-01A	COL1A1	chr17	48271710	-	MMP2	chr16	55525713	+
Frame-shit	ENST00000372391	ENST00000414778		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000372391	ENST00000373965		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000372391	ENST00000395438		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000409834		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395440		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395446		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395442		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395445		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000373957		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395432		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395433		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000361849		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000395430		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000320301		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000437009		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000373955		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372391	ENST00000463095		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000372388	ENST00000414778		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000372388	ENST00000373965		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000372388	ENST00000395438		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000409834		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395440		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395446		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395442		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395445		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000373957		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395432		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395433		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000361849		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000395430		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000320301		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000437009		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000373955		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000372388	ENST00000463095		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000459739	ENST00000414778		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000459739	ENST00000373965		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000459739	ENST00000395438		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000409834		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395440		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395446		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395442		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395445		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000373957		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395432		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395433		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000361849		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000395430		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000320301		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000437009		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000373955		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000459739	ENST00000463095		TCGA	LD	BRCA	TCGA-E9-A229-01A	DLG5	chr10	79685975	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000377411	ENST00000437809		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000377411	ENST00000368331		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000377411	ENST00000271883		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000377411	ENST00000361040		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000377411	ENST00000471341		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000414642	ENST00000437809		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000414642	ENST00000368331		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000414642	ENST00000271883		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000414642	ENST00000361040		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000414642	ENST00000471341		TCGA	LD	BRCA	TCGA-E9-A229-01A	GPR157	chr1	9188704	-	GON4L	chr1	155755165	-
5UTR-3CDS	ENST00000298569	ENST00000261942		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-intron	ENST00000298569	ENST00000510446		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-3CDS	ENST00000393728	ENST00000261942		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-intron	ENST00000393728	ENST00000510446		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-3CDS	ENST00000393725	ENST00000261942		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-intron	ENST00000393725	ENST00000510446		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-3CDS	ENST00000510164	ENST00000261942		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-intron	ENST00000510164	ENST00000510446		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-3CDS	ENST00000533553	ENST00000261942		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
5UTR-intron	ENST00000533553	ENST00000510446		TCGA	LD	BRCA	TCGA-E9-A229-01A	KIAA1191	chr5	175788605	-	FAF2	chr5	175933769	+
Frame-shit	ENST00000446488	ENST00000535633		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000446488	ENST00000424319		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000446488	ENST00000343727		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000446488	ENST00000534731		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000525196		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000263317		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000532825		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000527956		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000542487		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000527626		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000528341		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000413594		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000375979		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000531342		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000446488	ENST00000393282		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000304521	ENST00000535633		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000304521	ENST00000424319		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000304521	ENST00000343727		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000304521	ENST00000534731		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000525196		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000263317		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000532825		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000527956		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000542487		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000527626		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000528341		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000413594		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000375979		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000531342		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000304521	ENST00000393282		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524794	ENST00000535633		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524794	ENST00000424319		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524794	ENST00000343727		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524794	ENST00000534731		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000525196		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000263317		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000532825		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000527956		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000542487		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000527626		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000528341		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000413594		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000375979		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000531342		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524794	ENST00000393282		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524746	ENST00000535633		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524746	ENST00000424319		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524746	ENST00000343727		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
Frame-shit	ENST00000524746	ENST00000534731		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000525196		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000263317		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000532825		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000527956		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000542487		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000527626		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000528341		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000413594		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000375979		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000531342		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000524746	ENST00000393282		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-3CDS	ENST00000526940	ENST00000535633		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-3CDS	ENST00000526940	ENST00000424319		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-3CDS	ENST00000526940	ENST00000343727		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-3CDS	ENST00000526940	ENST00000534731		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000525196		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000263317		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000532825		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000527956		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000542487		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000527626		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000528341		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000413594		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000375979		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000531342		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
intron-intron	ENST00000526940	ENST00000393282		TCGA	LD	BRCA	TCGA-E9-A229-01A	NFRKB	chr11	129755330	-	NOX4	chr11	89135710	-
5CDS-intron	ENST00000414778	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000414778	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000414778	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000414778	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000414778	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000414778	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000414778	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000414778	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000414778	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373965	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000373965	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000373965	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000373965	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373965	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373965	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373965	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373965	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373965	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395438	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395438	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395438	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395438	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395438	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395438	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395438	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395438	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395438	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000409834	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-3UTR	ENST00000409834	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-3UTR	ENST00000409834	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-5UTR	ENST00000409834	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000409834	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000409834	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000409834	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000409834	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000409834	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395440	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395440	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395440	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395440	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395440	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395440	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395440	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395440	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395440	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395446	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395446	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395446	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395446	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395446	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395446	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395446	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395446	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395446	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395442	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395442	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395442	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395442	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395442	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395442	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395442	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395442	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395442	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395445	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395445	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395445	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395445	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395445	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395445	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395445	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395445	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395445	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373957	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000373957	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000373957	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000373957	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373957	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373957	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373957	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373957	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373957	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395432	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395432	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395432	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395432	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395432	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395432	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395432	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395432	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395432	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395433	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395433	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395433	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395433	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395433	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395433	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395433	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395433	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395433	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000361849	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000361849	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000361849	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000361849	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000361849	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000361849	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000361849	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000361849	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000361849	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395430	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395430	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000395430	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000395430	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395430	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395430	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395430	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395430	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000395430	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000320301	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000320301	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000320301	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000320301	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000320301	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000320301	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000320301	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000320301	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000320301	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000437009	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000437009	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000437009	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000437009	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000437009	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000437009	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000437009	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000437009	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000437009	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373955	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000373955	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-3UTR	ENST00000373955	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-5UTR	ENST00000373955	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373955	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373955	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373955	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373955	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
5CDS-intron	ENST00000373955	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000463095	ENST00000472493		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-3UTR	ENST00000463095	ENST00000372702		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-3UTR	ENST00000463095	ENST00000491677		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-5UTR	ENST00000463095	ENST00000607131		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000463095	ENST00000464872		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000463095	ENST00000605915		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000463095	ENST00000478873		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000463095	ENST00000372700		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
intron-intron	ENST00000463095	ENST00000607009		TCGA	LD	BRCA	TCGA-E9-A229-01A	PCDH15	chr10	56077031	-	DUSP13	chr10	76863855	-
In-frame	ENST00000369037	ENST00000370577		TCGA	LD	BRCA	TCGA-E9-A229-01A	PDSS2	chr6	107595233	-	LMBRD1	chr6	70428973	-
In-frame	ENST00000369037	ENST00000370570		TCGA	LD	BRCA	TCGA-E9-A229-01A	PDSS2	chr6	107595233	-	LMBRD1	chr6	70428973	-
In-frame	ENST00000453874	ENST00000370577		TCGA	LD	BRCA	TCGA-E9-A229-01A	PDSS2	chr6	107595233	-	LMBRD1	chr6	70428973	-
In-frame	ENST00000453874	ENST00000370570		TCGA	LD	BRCA	TCGA-E9-A229-01A	PDSS2	chr6	107595233	-	LMBRD1	chr6	70428973	-
In-frame	ENST00000369031	ENST00000370577		TCGA	LD	BRCA	TCGA-E9-A229-01A	PDSS2	chr6	107595233	-	LMBRD1	chr6	70428973	-
In-frame	ENST00000369031	ENST00000370570		TCGA	LD	BRCA	TCGA-E9-A229-01A	PDSS2	chr6	107595233	-	LMBRD1	chr6	70428973	-
In-frame	ENST00000371828	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000371828	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000371828	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000371802	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000371802	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000371802	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
Frame-shit	ENST00000371856	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
Frame-shit	ENST00000371856	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000371856	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000347458	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000347458	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000347458	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000340954	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000340954	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000340954	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000371792	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000371792	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000371792	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000360426	ENST00000371941		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
In-frame	ENST00000360426	ENST00000396220		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
5CDS-intron	ENST00000360426	ENST00000496915		TCGA	LD	BRCA	TCGA-E9-A229-01A	STAU1	chr20	47768119	-	PREX1	chr20	47364417	-
Frame-shit	ENST00000331163	ENST00000216146		TCGA	LD	BRCA	TCGA-E9-A22A-01A	PDGFB	chr22	39627627	-	RPL3	chr22	39714597	-
5CDS-5UTR	ENST00000331163	ENST00000465618		TCGA	LD	BRCA	TCGA-E9-A22A-01A	PDGFB	chr22	39627627	-	RPL3	chr22	39714597	-
5CDS-5UTR	ENST00000331163	ENST00000401609		TCGA	LD	BRCA	TCGA-E9-A22A-01A	PDGFB	chr22	39627627	-	RPL3	chr22	39714597	-
Frame-shit	ENST00000381551	ENST00000216146		TCGA	LD	BRCA	TCGA-E9-A22A-01A	PDGFB	chr22	39627627	-	RPL3	chr22	39714597	-
5CDS-5UTR	ENST00000381551	ENST00000465618		TCGA	LD	BRCA	TCGA-E9-A22A-01A	PDGFB	chr22	39627627	-	RPL3	chr22	39714597	-
5CDS-5UTR	ENST00000381551	ENST00000401609		TCGA	LD	BRCA	TCGA-E9-A22A-01A	PDGFB	chr22	39627627	-	RPL3	chr22	39714597	-
5CDS-3UTR	ENST00000406452	ENST00000280979		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000406452	ENST00000557354		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000406452	ENST00000557272		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000406452	ENST00000554449		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-3UTR	ENST00000523911	ENST00000280979		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000523911	ENST00000557354		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000523911	ENST00000557272		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000523911	ENST00000554449		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-3UTR	ENST00000519966	ENST00000280979		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000519966	ENST00000557354		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000519966	ENST00000557272		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000519966	ENST00000554449		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-3UTR	ENST00000430676	ENST00000280979		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000430676	ENST00000557354		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000430676	ENST00000557272		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
5CDS-intron	ENST00000430676	ENST00000554449		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
intron-3UTR	ENST00000518772	ENST00000280979		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
intron-intron	ENST00000518772	ENST00000557354		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
intron-intron	ENST00000518772	ENST00000557272		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
intron-intron	ENST00000518772	ENST00000554449		TCGA	LD	BRCA	TCGA-E9-A22A-01A	RMDN1	chr8	87487049	-	AKAP6	chr14	33299054	+
intron-3CDS	ENST00000544892	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
intron-3CDS	ENST00000544892	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
intron-intron	ENST00000544892	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
3UTR-3CDS	ENST00000320031	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
3UTR-3CDS	ENST00000320031	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
3UTR-intron	ENST00000320031	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
intron-3CDS	ENST00000007722	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
intron-3CDS	ENST00000007722	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
intron-intron	ENST00000007722	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	ITGA3	chr17	48167444	+	CPB1	chr3	148562293	+
intron-intron	ENST00000316005	ENST00000370056		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000316005	ENST00000527011		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000316005	ENST00000544443		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000316005	ENST00000415432		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000316005	ENST00000343258		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000316005	ENST00000371846		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370521	ENST00000370056		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370521	ENST00000527011		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370521	ENST00000544443		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370521	ENST00000415432		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370521	ENST00000343258		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370521	ENST00000371846		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370505	ENST00000370056		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370505	ENST00000527011		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370505	ENST00000544443		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370505	ENST00000415432		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370505	ENST00000343258		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370505	ENST00000371846		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370513	ENST00000370056		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370513	ENST00000527011		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370513	ENST00000544443		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370513	ENST00000415432		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370513	ENST00000343258		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000370513	ENST00000371846		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000544045	ENST00000370056		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000544045	ENST00000527011		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000544045	ENST00000544443		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000544045	ENST00000415432		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000544045	ENST00000343258		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
5CDS-intron	ENST00000544045	ENST00000371846		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000495119	ENST00000370056		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000495119	ENST00000527011		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000495119	ENST00000544443		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000495119	ENST00000415432		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000495119	ENST00000343258		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-intron	ENST00000495119	ENST00000371846		TCGA	LD	BRCA	TCGA-E9-A22B-01A	PKN2	chr1	89279416	+	VAV3	chr1	108212094	-
intron-3CDS	ENST00000553780	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
intron-3CDS	ENST00000553780	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
intron-intron	ENST00000553780	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
Frame-shit	ENST00000554866	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
Frame-shit	ENST00000554866	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
5CDS-intron	ENST00000554866	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
In-frame	ENST00000329597	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
In-frame	ENST00000329597	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
5CDS-intron	ENST00000329597	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
Frame-shit	ENST00000554276	ENST00000491148		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
Frame-shit	ENST00000554276	ENST00000282957		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
5CDS-intron	ENST00000554276	ENST00000498639		TCGA	LD	BRCA	TCGA-E9-A22B-01A	SERPINA5	chr14	95059457	+	CPB1	chr3	148558479	+
Frame-shit	ENST00000353139	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000353139	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
5CDS-intron	ENST00000353139	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000360679	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000360679	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
5CDS-intron	ENST00000360679	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000394406	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000394406	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
5CDS-intron	ENST00000394406	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000335166	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
Frame-shit	ENST00000335166	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
5CDS-intron	ENST00000335166	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000416895	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000416895	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-intron	ENST00000416895	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000361253	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000361253	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-intron	ENST00000361253	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000588142	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000588142	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-intron	ENST00000588142	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000589665	ENST00000225823		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-3CDS	ENST00000589665	ENST00000359872		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
intron-intron	ENST00000589665	ENST00000448983		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ACACA	chr17	35614625	-	ASIC2	chr17	31344702	-
5UTR-3CDS	ENST00000448504	ENST00000590474		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ARSG	chr17	66303228	+	MAP2K6	chr17	67501921	+
5UTR-5UTR	ENST00000448504	ENST00000589647		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ARSG	chr17	66303228	+	MAP2K6	chr17	67501921	+
intron-3CDS	ENST00000452479	ENST00000590474		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ARSG	chr17	66303228	+	MAP2K6	chr17	67501921	+
intron-5UTR	ENST00000452479	ENST00000589647		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ARSG	chr17	66303228	+	MAP2K6	chr17	67501921	+
intron-3CDS	ENST00000582154	ENST00000590474		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ARSG	chr17	66303228	+	MAP2K6	chr17	67501921	+
intron-5UTR	ENST00000582154	ENST00000589647		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ARSG	chr17	66303228	+	MAP2K6	chr17	67501921	+
Frame-shit	ENST00000367942	ENST00000255175		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
Frame-shit	ENST00000367942	ENST00000342374		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
Frame-shit	ENST00000367942	ENST00000541235		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
5CDS-intron	ENST00000367942	ENST00000468234		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
intron-3CDS	ENST00000476437	ENST00000255175		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
intron-3CDS	ENST00000476437	ENST00000342374		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
intron-3CDS	ENST00000476437	ENST00000541235		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
intron-intron	ENST00000476437	ENST00000468234		TCGA	LD	BRCA	TCGA-E9-A22D-01A	ATF6	chr1	161833102	+	SERINC3	chr20	43129941	-
In-frame	ENST00000335016	ENST00000264485		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000335016	ENST00000425175		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000335016	ENST00000351898		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000335016	ENST00000340595		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
5CDS-intron	ENST00000335016	ENST00000514331		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
5CDS-intron	ENST00000335016	ENST00000512686		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000502871	ENST00000264485		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000502871	ENST00000425175		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000502871	ENST00000351898		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000502871	ENST00000340595		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
5CDS-intron	ENST00000502871	ENST00000514331		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
5CDS-intron	ENST00000502871	ENST00000512686		TCGA	LD	BRCA	TCGA-E9-A22D-01A	BMP2K	chr4	79772210	+	SLC4A4	chr4	72352665	+
In-frame	ENST00000529689	ENST00000315392		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529689	ENST00000493200		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529689	ENST00000539608		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529689	ENST00000444911		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529689	ENST00000394316		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
In-frame	ENST00000455220	ENST00000315392		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000455220	ENST00000493200		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000455220	ENST00000539608		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000455220	ENST00000444911		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000455220	ENST00000394316		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
intron-3CDS	ENST00000525504	ENST00000315392		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000525504	ENST00000493200		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000525504	ENST00000539608		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000525504	ENST00000444911		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000525504	ENST00000394316		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
In-frame	ENST00000525503	ENST00000315392		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000525503	ENST00000493200		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000525503	ENST00000539608		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000525503	ENST00000444911		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000525503	ENST00000394316		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
In-frame	ENST00000529611	ENST00000315392		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529611	ENST00000493200		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529611	ENST00000539608		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529611	ENST00000444911		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529611	ENST00000394316		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
In-frame	ENST00000529073	ENST00000315392		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529073	ENST00000493200		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529073	ENST00000539608		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529073	ENST00000444911		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000529073	ENST00000394316		TCGA	LD	BRCA	TCGA-E9-A22D-01A	CCDC90B	chr11	82984690	-	PLXDC1	chr17	37265644	-
intron-intron	ENST00000427522	ENST00000464097		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
intron-intron	ENST00000427522	ENST00000372874		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
intron-intron	ENST00000427522	ENST00000537820		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
5CDS-intron	ENST00000467148	ENST00000464097		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
5CDS-intron	ENST00000467148	ENST00000372874		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
5CDS-intron	ENST00000467148	ENST00000537820		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
intron-intron	ENST00000479540	ENST00000464097		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
intron-intron	ENST00000479540	ENST00000372874		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
intron-intron	ENST00000479540	ENST00000537820		TCGA	LD	BRCA	TCGA-E9-A22D-01A	HELZ2	chr20	62203461	-	ADA	chr20	43264929	-
In-frame	ENST00000382374	ENST00000381655		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MICU2	chr13	22178078	-	ATP8A2	chr13	26402256	+
5CDS-intron	ENST00000382374	ENST00000255283		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MICU2	chr13	22178078	-	ATP8A2	chr13	26402256	+
5CDS-3UTR	ENST00000382374	ENST00000491840		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MICU2	chr13	22178078	-	ATP8A2	chr13	26402256	+
intron-3CDS	ENST00000479790	ENST00000381655		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MICU2	chr13	22178078	-	ATP8A2	chr13	26402256	+
intron-intron	ENST00000479790	ENST00000255283		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MICU2	chr13	22178078	-	ATP8A2	chr13	26402256	+
intron-3UTR	ENST00000479790	ENST00000491840		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MICU2	chr13	22178078	-	ATP8A2	chr13	26402256	+
intron-intron	ENST00000412162	ENST00000371440		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR181A1HG	chr1	198869540	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000412162	ENST00000371435		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR181A1HG	chr1	198869540	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000412162	ENST00000395961		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR181A1HG	chr1	198869540	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000412162	ENST00000434986		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR181A1HG	chr1	198869540	-	BCAS1	chr20	52574036	-
intron-intron	ENST00000412162	ENST00000411563		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR181A1HG	chr1	198869540	-	BCAS1	chr20	52574036	-
3UTR-3CDS	ENST00000362134	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR21	chr17	57918685	+	DHCR7	chr11	71152487	-
3UTR-3CDS	ENST00000362134	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	MIR21	chr17	57918685	+	DHCR7	chr11	71152487	-
5CDS-intron	ENST00000271469	ENST00000393038		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000271469	ENST00000537860		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000271469	ENST00000409433		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000271469	ENST00000470557		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000271469	ENST00000579915		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367926	ENST00000393038		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367926	ENST00000537860		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367926	ENST00000409433		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367926	ENST00000470557		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367926	ENST00000579915		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
intron-intron	ENST00000476240	ENST00000393038		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
intron-intron	ENST00000476240	ENST00000537860		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
intron-intron	ENST00000476240	ENST00000409433		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
intron-intron	ENST00000476240	ENST00000470557		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
intron-intron	ENST00000476240	ENST00000579915		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367924	ENST00000393038		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367924	ENST00000537860		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367924	ENST00000409433		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367924	ENST00000470557		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367924	ENST00000579915		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367925	ENST00000393038		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367925	ENST00000537860		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367925	ENST00000409433		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367925	ENST00000470557		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
5CDS-intron	ENST00000367925	ENST00000579915		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UAP1	chr1	162551249	+	PTRH2	chr17	57752182	-
Frame-shit	ENST00000368003	ENST00000355303		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
Frame-shit	ENST00000368003	ENST00000398543		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
Frame-shit	ENST00000368003	ENST00000538023		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
5CDS-intron	ENST00000368003	ENST00000316296		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
5CDS-intron	ENST00000368003	ENST00000530676		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
5CDS-intron	ENST00000368003	ENST00000531349		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
5CDS-intron	ENST00000368003	ENST00000525494		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-3CDS	ENST00000473766	ENST00000355303		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-3CDS	ENST00000473766	ENST00000398543		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-3CDS	ENST00000473766	ENST00000538023		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-intron	ENST00000473766	ENST00000316296		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-intron	ENST00000473766	ENST00000530676		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-intron	ENST00000473766	ENST00000531349		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
3UTR-intron	ENST00000473766	ENST00000525494		TCGA	LD	BRCA	TCGA-E9-A22D-01A	UFC1	chr1	161123910	+	ANO1	chr11	70013348	+
intron-3CDS	ENST00000262291	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000262291	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000537567	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000537567	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000539763	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000539763	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000536180	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000536180	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000545362	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000545362	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000588617	ENST00000407721		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
intron-3CDS	ENST00000588617	ENST00000355527		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VMP1	chr17	57918685	+	DHCR7	chr11	71152487	-
5CDS-3UTR	ENST00000354473	ENST00000371497		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VPS72	chr1	151156793	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000354473	ENST00000603338		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VPS72	chr1	151156793	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000354473	ENST00000329613		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VPS72	chr1	151156793	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000496809	ENST00000371497		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VPS72	chr1	151156793	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000496809	ENST00000603338		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VPS72	chr1	151156793	-	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000496809	ENST00000329613		TCGA	LD	BRCA	TCGA-E9-A22D-01A	VPS72	chr1	151156793	-	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000525428	ENST00000340149		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000525428	ENST00000361507		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000525428	ENST00000526030		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000263309	ENST00000340149		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000263309	ENST00000361507		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000263309	ENST00000526030		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000525064	ENST00000340149		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000525064	ENST00000361507		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000525064	ENST00000526030		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000532069	ENST00000340149		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000532069	ENST00000361507		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000532069	ENST00000526030		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000528364	ENST00000340149		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
Frame-shit	ENST00000528364	ENST00000361507		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
5CDS-5UTR	ENST00000528364	ENST00000526030		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000533957	ENST00000340149		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
intron-3CDS	ENST00000533957	ENST00000361507		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
intron-5UTR	ENST00000533957	ENST00000526030		TCGA	LD	BRCA	TCGA-E9-A22E-01A	CLNS1A	chr11	77348635	-	GAB2	chr11	77938097	-
5CDS-intron	ENST00000580974	ENST00000355849		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000580974	ENST00000520981		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-3UTR	ENST00000580974	ENST00000522578		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000299954	ENST00000355849		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000299954	ENST00000520981		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-3UTR	ENST00000299954	ENST00000522578		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000335257	ENST00000355849		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000335257	ENST00000520981		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-3UTR	ENST00000335257	ENST00000522578		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000581322	ENST00000355849		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-intron	ENST00000581322	ENST00000520981		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
5CDS-3UTR	ENST00000581322	ENST00000522578		TCGA	LD	BRCA	TCGA-E9-A22E-01A	PITPNC1	chr17	65671658	+	KHDRBS3	chr8	136660783	+
Frame-shit	ENST00000257209	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
5CDS-intron	ENST00000257209	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
Frame-shit	ENST00000445677	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
5CDS-intron	ENST00000445677	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
Frame-shit	ENST00000590592	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
5CDS-intron	ENST00000590592	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
Frame-shit	ENST00000359247	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
5CDS-intron	ENST00000359247	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
intron-3CDS	ENST00000591635	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
intron-intron	ENST00000591635	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
intron-3CDS	ENST00000592128	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
intron-intron	ENST00000592128	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
intron-3CDS	ENST00000587493	ENST00000261326		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
intron-intron	ENST00000587493	ENST00000588132		TCGA	LD	BRCA	TCGA-E9-A22G-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33775220	+
5CDS-intron	ENST00000522684	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000522684	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000522684	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000522684	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000522684	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000535192	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000535192	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000535192	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000535192	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000535192	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519465	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000519465	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519465	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519465	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519465	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000517887	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000517887	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000517887	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000517887	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000517887	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000521059	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000521059	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000521059	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000521059	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000521059	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000395218	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000395218	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000395218	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000395218	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000395218	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000538769	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000538769	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000538769	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000538769	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000538769	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000340930	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000340930	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000340930	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000340930	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000340930	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519419	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000519419	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519419	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519419	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000519419	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000430260	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-3UTR	ENST00000430260	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000430260	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000430260	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
5CDS-intron	ENST00000430260	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519881	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-3UTR	ENST00000519881	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519881	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519881	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519881	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520892	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-3UTR	ENST00000520892	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520892	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520892	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520892	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519635	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-3UTR	ENST00000519635	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519635	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519635	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000519635	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000517712	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-3UTR	ENST00000517712	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000517712	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000517712	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000517712	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000522950	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-3UTR	ENST00000522950	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000522950	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000522950	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000522950	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520151	ENST00000521243		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-3UTR	ENST00000520151	ENST00000521035		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520151	ENST00000427715		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520151	ENST00000519688		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
intron-intron	ENST00000520151	ENST00000456015		TCGA	LD	BRCA	TCGA-E9-A22G-01A	PTK2	chr8	141696731	-	SLC30A8	chr8	118019230	+
Frame-shit	ENST00000286713	ENST00000371581		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
Frame-shit	ENST00000286713	ENST00000265986		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
5CDS-5UTR	ENST00000286713	ENST00000496903		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
5UTR-3CDS	ENST00000538954	ENST00000371581		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
5UTR-3CDS	ENST00000538954	ENST00000265986		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
5UTR-5UTR	ENST00000538954	ENST00000496903		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
Frame-shit	ENST00000347359	ENST00000371581		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
Frame-shit	ENST00000347359	ENST00000265986		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
5CDS-5UTR	ENST00000347359	ENST00000496903		TCGA	LD	BRCA	TCGA-E9-A22G-01A	STOM	chr9	124132405	-	IDE	chr10	94221009	-
intron-3CDS	ENST00000395715	ENST00000220913		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-intron	ENST00000395715	ENST00000519533		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-3CDS	ENST00000220888	ENST00000220913		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-intron	ENST00000220888	ENST00000519533		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-3CDS	ENST00000519076	ENST00000220913		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-intron	ENST00000519076	ENST00000519533		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
In-frame	ENST00000520276	ENST00000220913		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
5CDS-intron	ENST00000520276	ENST00000519533		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-3CDS	ENST00000519674	ENST00000220913		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
intron-intron	ENST00000519674	ENST00000519533		TCGA	LD	BRCA	TCGA-E9-A22G-01A	TRPS1	chr8	116680101	-	CHRAC1	chr8	141524468	+
5CDS-intron	ENST00000535141	ENST00000321297		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000535141	ENST00000534905		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000535141	ENST00000451353		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000307897	ENST00000321297		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000307897	ENST00000534905		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000307897	ENST00000451353		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000446801	ENST00000321297		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000446801	ENST00000534905		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000446801	ENST00000451353		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000565627	ENST00000321297		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000565627	ENST00000534905		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000565627	ENST00000451353		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
intron-intron	ENST00000565960	ENST00000321297		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
intron-3UTR	ENST00000565960	ENST00000534905		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
intron-intron	ENST00000565960	ENST00000451353		TCGA	LD	BRCA	TCGA-E9-A22G-01A	ZWILCH	chr15	66825351	+	ATG16L2	chr11	72553662	+
In-frame	ENST00000300255	ENST00000270112		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
5CDS-intron	ENST00000300255	ENST00000465574		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
In-frame	ENST00000401402	ENST00000270112		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
5CDS-intron	ENST00000401402	ENST00000465574		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
In-frame	ENST00000382699	ENST00000270112		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
5CDS-intron	ENST00000382699	ENST00000465574		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
intron-3CDS	ENST00000485488	ENST00000270112		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
intron-intron	ENST00000485488	ENST00000465574		TCGA	LD	BRCA	TCGA-E9-A22H-01A	EVA1C	chr21	33840156	+	HUNK	chr21	33318348	+
In-frame	ENST00000219097	ENST00000299138		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
5CDS-intron	ENST00000219097	ENST00000568642		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
In-frame	ENST00000568364	ENST00000299138		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
5CDS-intron	ENST00000568364	ENST00000568642		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
In-frame	ENST00000566860	ENST00000299138		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
5CDS-intron	ENST00000566860	ENST00000568642		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
intron-3CDS	ENST00000575571	ENST00000299138		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
intron-intron	ENST00000575571	ENST00000568642		TCGA	LD	BRCA	TCGA-E9-A22H-01A	ORC6	chr16	46725032	+	VPS35	chr16	46717518	-
intron-3CDS	ENST00000435296	ENST00000354725		TCGA	LD	BRCA	TCGA-E9-A243-01A	HILPDA	chr7	128096077	+	SND1	chr7	127729541	+
intron-intron	ENST00000435296	ENST00000467238		TCGA	LD	BRCA	TCGA-E9-A243-01A	HILPDA	chr7	128096077	+	SND1	chr7	127729541	+
5UTR-3CDS	ENST00000257696	ENST00000354725		TCGA	LD	BRCA	TCGA-E9-A243-01A	HILPDA	chr7	128096077	+	SND1	chr7	127729541	+
5UTR-intron	ENST00000257696	ENST00000467238		TCGA	LD	BRCA	TCGA-E9-A243-01A	HILPDA	chr7	128096077	+	SND1	chr7	127729541	+
3UTR-3CDS	ENST00000481454	ENST00000354725		TCGA	LD	BRCA	TCGA-E9-A243-01A	HILPDA	chr7	128096077	+	SND1	chr7	127729541	+
3UTR-intron	ENST00000481454	ENST00000467238		TCGA	LD	BRCA	TCGA-E9-A243-01A	HILPDA	chr7	128096077	+	SND1	chr7	127729541	+
intron-3CDS	ENST00000340979	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000340979	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000340979	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000368131	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000368131	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000368131	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000368132	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000368132	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000368132	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000295809	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000295809	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000295809	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000430894	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000430894	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000430894	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000359709	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000359709	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000359709	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000448393	ENST00000271732		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000448393	ENST00000540514		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000448393	ENST00000479757		TCGA	LD	BRCA	TCGA-E9-A243-01A	IFI16	chr1	158970185	+	GOLPH3L	chr1	150636239	-
5UTR-3CDS	ENST00000513024	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
5UTR-3CDS	ENST00000513024	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
5UTR-intron	ENST00000513024	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
5UTR-intron	ENST00000513024	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
5UTR-intron	ENST00000513024	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000509638	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000509638	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509638	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509638	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509638	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000508501	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000508501	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000508501	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000508501	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000508501	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000512946	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000512946	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512946	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512946	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512946	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000313860	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000313860	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000313860	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000313860	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000313860	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000512632	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000512632	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512632	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512632	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512632	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000512820	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000512820	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512820	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512820	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000512820	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000503057	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000503057	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000503057	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000503057	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000503057	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000511496	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000511496	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000511496	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000511496	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000511496	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000514096	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000514096	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000514096	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000514096	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000514096	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000509277	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000509277	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509277	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509277	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509277	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000396595	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000396595	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000396595	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000396595	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000396595	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000381753	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000381753	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000381753	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000381753	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000381753	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000509454	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000509454	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509454	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509454	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000509454	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000515785	ENST00000503431		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-3CDS	ENST00000515785	ENST00000284440		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000515785	ENST00000504818		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000515785	ENST00000508768		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
intron-intron	ENST00000515785	ENST00000512788		TCGA	LD	BRCA	TCGA-E9-A243-01A	LIMCH1	chr4	41361820	+	UCHL1	chr4	41270004	+
Frame-shit	ENST00000216122	ENST00000447733		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000216122	ENST00000449058		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000216122	ENST00000425375		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000216122	ENST00000411850		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000216122	ENST00000436462		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000216122	ENST00000382034		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000382011	ENST00000447733		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000382011	ENST00000449058		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000382011	ENST00000425375		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000382011	ENST00000411850		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000382011	ENST00000436462		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000382011	ENST00000382034		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000465557	ENST00000447733		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000465557	ENST00000449058		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000465557	ENST00000425375		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000465557	ENST00000411850		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000465557	ENST00000436462		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000465557	ENST00000382034		TCGA	LD	BRCA	TCGA-E9-A243-01A	MCM5	chr22	35804556	+	TOM1	chr22	35723264	+
5UTR-3CDS	ENST00000427410	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
5UTR-3CDS	ENST00000447388	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
5UTR-3CDS	ENST00000425457	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
5UTR-3CDS	ENST00000456393	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
5UTR-3CDS	ENST00000372654	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
intron-3CDS	ENST00000372653	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
intron-3CDS	ENST00000372652	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
intron-3CDS	ENST00000372651	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
intron-3CDS	ENST00000440226	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
intron-3CDS	ENST00000308733	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
intron-3CDS	ENST00000483091	ENST00000227880		TCGA	LD	BRCA	TCGA-E9-A243-01A	NFYC	chr1	41157539	+	SLC15A3	chr11	60714293	-
In-frame	ENST00000269033	ENST00000377452		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000269033	ENST00000494921		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
In-frame	ENST00000540801	ENST00000377452		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000540801	ENST00000494921		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000324677	ENST00000377452		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-intron	ENST00000324677	ENST00000494921		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000582084	ENST00000377452		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-intron	ENST00000582084	ENST00000494921		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000590153	ENST00000377452		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-intron	ENST00000590153	ENST00000494921		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-3CDS	ENST00000579954	ENST00000377452		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
intron-intron	ENST00000579954	ENST00000494921		TCGA	LD	BRCA	TCGA-E9-A243-01A	SSH2	chr17	28120912	-	DTD1	chr20	18724744	+
5UTR-5UTR	ENST00000339438	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000339438	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000339438	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-intron	ENST00000339438	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000438362	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000438362	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000438362	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-intron	ENST00000438362	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000358528	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000358528	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000358528	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-intron	ENST00000358528	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000261443	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000261443	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000261443	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-intron	ENST00000261443	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000530886	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000530886	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000530886	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-intron	ENST00000530886	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000369530	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000369530	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000369530	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-intron	ENST00000369530	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000483407	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000483407	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000483407	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-intron	ENST00000483407	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000534699	ENST00000393276		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000534699	ENST00000393274		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-5UTR	ENST00000534699	ENST00000393277		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
intron-intron	ENST00000534699	ENST00000481894		TCGA	LD	BRCA	TCGA-E9-A244-01A	CSDE1	chr1	115292442	-	DENND2C	chr1	115168809	-
5UTR-5UTR	ENST00000434457	ENST00000297689		TCGA	LD	BRCA	TCGA-E9-A244-01A	DENND4C	chr9	19230831	+	NFIL3	chr9	94173188	-
5UTR-5UTR	ENST00000602925	ENST00000297689		TCGA	LD	BRCA	TCGA-E9-A244-01A	DENND4C	chr9	19230831	+	NFIL3	chr9	94173188	-
intron-5UTR	ENST00000380432	ENST00000297689		TCGA	LD	BRCA	TCGA-E9-A244-01A	DENND4C	chr9	19230831	+	NFIL3	chr9	94173188	-
Frame-shit	ENST00000304457	ENST00000361445		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
Frame-shit	ENST00000304457	ENST00000376838		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
5CDS-intron	ENST00000304457	ENST00000495435		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
Frame-shit	ENST00000376936	ENST00000361445		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
Frame-shit	ENST00000376936	ENST00000376838		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
5CDS-intron	ENST00000376936	ENST00000495435		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
Frame-shit	ENST00000544779	ENST00000361445		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
Frame-shit	ENST00000544779	ENST00000376838		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
5CDS-intron	ENST00000544779	ENST00000495435		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
intron-3CDS	ENST00000485606	ENST00000361445		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
intron-3CDS	ENST00000485606	ENST00000376838		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
intron-intron	ENST00000485606	ENST00000495435		TCGA	LD	BRCA	TCGA-E9-A244-01A	EXOSC10	chr1	11140556	-	MTOR	chr1	11177143	-
5CDS-intron	ENST00000518525	ENST00000518527		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000518525	ENST00000377360		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000518525	ENST00000328939		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000518525	ENST00000390656		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000518525	ENST00000520740		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000518525	ENST00000434108		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000518525	ENST00000411494		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000518527		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000377360		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000328939		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000390656		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000520740		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000434108		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000265294	ENST00000411494		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000518527		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000377360		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000328939		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000390656		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000520740		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000434108		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519385	ENST00000411494		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000518527		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000377360		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000328939		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000390656		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000520740		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000434108		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
5CDS-intron	ENST00000519598	ENST00000411494		TCGA	LD	BRCA	TCGA-E9-A244-01A	GABRP	chr5	170216251	+	KCNIP1	chr5	170147325	+
Frame-shit	ENST00000318037	ENST00000397537		TCGA	LD	BRCA	TCGA-E9-A244-01A	RNF168	chr3	196229744	-	SMCO1	chr3	196235202	-
5CDS-3UTR	ENST00000542569	ENST00000593699		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000542569	ENST00000372499		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000542569	ENST00000496424		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372687	ENST00000593699		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372687	ENST00000372499		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000372687	ENST00000496424		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372690	ENST00000593699		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372690	ENST00000372499		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000372690	ENST00000496424		TCGA	LD	BRCA	TCGA-E9-A244-01A	SAMD8	chr10	76910864	+	C10orf11	chr10	77795766	+
Frame-shit	ENST00000370634	ENST00000370629		TCGA	LD	BRCA	TCGA-E9-A244-01A	VGLL1	chrX	135632980	+	CD40LG	chrX	135741198	+
Frame-shit	ENST00000370634	ENST00000370628		TCGA	LD	BRCA	TCGA-E9-A244-01A	VGLL1	chrX	135632980	+	CD40LG	chrX	135741198	+
3UTR-3CDS	ENST00000470358	ENST00000370629		TCGA	LD	BRCA	TCGA-E9-A244-01A	VGLL1	chrX	135632980	+	CD40LG	chrX	135741198	+
3UTR-3CDS	ENST00000470358	ENST00000370628		TCGA	LD	BRCA	TCGA-E9-A244-01A	VGLL1	chrX	135632980	+	CD40LG	chrX	135741198	+
Frame-shit	ENST00000359943	ENST00000358321		TCGA	LD	BRCA	TCGA-E9-A247-01A	FAM3C	chr7	121011354	-	SUSD2	chr22	24581062	+
intron-3CDS	ENST00000406486	ENST00000394806		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000406486	ENST00000285697		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-5UTR	ENST00000406486	ENST00000564250		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000358431	ENST00000394806		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000358431	ENST00000285697		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-5UTR	ENST00000358431	ENST00000564250		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000401395	ENST00000394806		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000401395	ENST00000285697		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
intron-5UTR	ENST00000401395	ENST00000564250		TCGA	LD	BRCA	TCGA-E9-A247-01A	KIAA1671	chr22	25508429	+	C16orf87	chr16	46858394	-
5CDS-intron	ENST00000368149	ENST00000368491		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
5CDS-intron	ENST00000368149	ENST00000368488		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
5CDS-intron	ENST00000368149	ENST00000360290		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
5CDS-5UTR	ENST00000368149	ENST00000392500		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
5CDS-intron	ENST00000368149	ENST00000419517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
5CDS-intron	ENST00000368149	ENST00000472713		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
intron-intron	ENST00000463225	ENST00000368491		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
intron-intron	ENST00000463225	ENST00000368488		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
intron-intron	ENST00000463225	ENST00000360290		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
intron-5UTR	ENST00000463225	ENST00000392500		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
intron-intron	ENST00000463225	ENST00000419517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
intron-intron	ENST00000463225	ENST00000472713		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARHGAP18	chr6	130031169	-	CEP85L	chr6	118985684	-
In-frame	ENST00000350026	ENST00000367328		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000350026	ENST00000358517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000346085	ENST00000367328		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000346085	ENST00000358517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000367148	ENST00000367328		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000367148	ENST00000358517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000275248	ENST00000367328		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
In-frame	ENST00000275248	ENST00000358517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
intron-3CDS	ENST00000478761	ENST00000367328		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
intron-3CDS	ENST00000478761	ENST00000358517		TCGA	LD	BRCA	TCGA-E9-A248-01A	ARID1B	chr6	157256710	+	PLEKHG1	chr6	151089774	+
5UTR-3CDS	ENST00000370033	ENST00000401604		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000370033	ENST00000373985		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000370033	ENST00000373980		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000370033	ENST00000373975		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000311122	ENST00000401604		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000311122	ENST00000373985		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000311122	ENST00000373980		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
5UTR-3CDS	ENST00000311122	ENST00000373975		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
intron-3CDS	ENST00000495001	ENST00000401604		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
intron-3CDS	ENST00000495001	ENST00000373985		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
intron-3CDS	ENST00000495001	ENST00000373980		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
intron-3CDS	ENST00000495001	ENST00000373975		TCGA	LD	BRCA	TCGA-E9-A248-01A	C10orf76	chr10	103815842	-	PRKG1	chr10	54031110	+
Frame-shit	ENST00000328090	ENST00000355029		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
5CDS-5UTR	ENST00000328090	ENST00000542715		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
5CDS-intron	ENST00000328090	ENST00000380359		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
5CDS-intron	ENST00000328090	ENST00000484741		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
intron-3CDS	ENST00000463468	ENST00000355029		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
intron-5UTR	ENST00000463468	ENST00000542715		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
intron-intron	ENST00000463468	ENST00000380359		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
intron-intron	ENST00000463468	ENST00000484741		TCGA	LD	BRCA	TCGA-E9-A248-01A	FAM208B	chr10	5803434	+	NET1	chr10	5471133	+
intron-3CDS	ENST00000367604	ENST00000367321		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000367604	ENST00000367307		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000367604	ENST00000478643		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-3CDS	ENST00000367603	ENST00000367321		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000367603	ENST00000367307		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000367603	ENST00000478643		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-3CDS	ENST00000012134	ENST00000367321		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000012134	ENST00000367307		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000012134	ENST00000478643		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-3CDS	ENST00000474532	ENST00000367321		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000474532	ENST00000367307		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
intron-intron	ENST00000474532	ENST00000478643		TCGA	LD	BRCA	TCGA-E9-A248-01A	HIVEP2	chr6	143267081	-	MTHFD1L	chr6	151355629	+
5UTR-3CDS	ENST00000380615	ENST00000361042		TCGA	LD	BRCA	TCGA-E9-A248-01A	KATNAL1	chr13	30881468	-	WASF3	chr13	27241654	+
5UTR-3CDS	ENST00000380615	ENST00000335327		TCGA	LD	BRCA	TCGA-E9-A248-01A	KATNAL1	chr13	30881468	-	WASF3	chr13	27241654	+
5UTR-3UTR	ENST00000380615	ENST00000496788		TCGA	LD	BRCA	TCGA-E9-A248-01A	KATNAL1	chr13	30881468	-	WASF3	chr13	27241654	+
intron-3CDS	ENST00000380617	ENST00000361042		TCGA	LD	BRCA	TCGA-E9-A248-01A	KATNAL1	chr13	30881468	-	WASF3	chr13	27241654	+
intron-3CDS	ENST00000380617	ENST00000335327		TCGA	LD	BRCA	TCGA-E9-A248-01A	KATNAL1	chr13	30881468	-	WASF3	chr13	27241654	+
intron-3UTR	ENST00000380617	ENST00000496788		TCGA	LD	BRCA	TCGA-E9-A248-01A	KATNAL1	chr13	30881468	-	WASF3	chr13	27241654	+
Frame-shit	ENST00000345080	ENST00000392738		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
Frame-shit	ENST00000345080	ENST00000500704		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
Frame-shit	ENST00000345080	ENST00000327681		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
5CDS-intron	ENST00000345080	ENST00000539675		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
5CDS-intron	ENST00000345080	ENST00000369233		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
5CDS-intron	ENST00000345080	ENST00000329966		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
5CDS-intron	ENST00000345080	ENST00000472914		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
5CDS-intron	ENST00000345080	ENST00000369232		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
5CDS-intron	ENST00000345080	ENST00000369231		TCGA	LD	BRCA	TCGA-E9-A248-01A	LIN28B	chr6	105406161	+	USP45	chr6	99924106	-
In-frame	ENST00000367576	ENST00000343245		TCGA	LD	BRCA	TCGA-E9-A248-01A	LTV1	chr6	144167361	+	ATG5	chr6	106649964	-
In-frame	ENST00000367576	ENST00000369070		TCGA	LD	BRCA	TCGA-E9-A248-01A	LTV1	chr6	144167361	+	ATG5	chr6	106649964	-
In-frame	ENST00000367576	ENST00000369076		TCGA	LD	BRCA	TCGA-E9-A248-01A	LTV1	chr6	144167361	+	ATG5	chr6	106649964	-
Frame-shit	ENST00000367576	ENST00000360666		TCGA	LD	BRCA	TCGA-E9-A248-01A	LTV1	chr6	144167361	+	ATG5	chr6	106649964	-
5CDS-5UTR	ENST00000367576	ENST00000475645		TCGA	LD	BRCA	TCGA-E9-A248-01A	LTV1	chr6	144167361	+	ATG5	chr6	106649964	-
5CDS-5UTR	ENST00000367321	ENST00000368250		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367321	ENST00000368248		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367321	ENST00000543064		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367321	ENST00000537166		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367307	ENST00000368250		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367307	ENST00000368248		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367307	ENST00000543064		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5CDS-5UTR	ENST00000367307	ENST00000537166		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
intron-5UTR	ENST00000478643	ENST00000368250		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
intron-5UTR	ENST00000478643	ENST00000368248		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
intron-5UTR	ENST00000478643	ENST00000543064		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
intron-5UTR	ENST00000478643	ENST00000537166		TCGA	LD	BRCA	TCGA-E9-A248-01A	MTHFD1L	chr6	151187185	+	THEMIS	chr6	128176333	-
5UTR-3CDS	ENST00000409419	ENST00000249396		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-5UTR	ENST00000409419	ENST00000392081		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-5UTR	ENST00000409419	ENST00000358931		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-intron	ENST00000409419	ENST00000481381		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-3CDS	ENST00000409587	ENST00000249396		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-5UTR	ENST00000409587	ENST00000392081		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-5UTR	ENST00000409587	ENST00000358931		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-intron	ENST00000409587	ENST00000481381		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
3UTR-3CDS	ENST00000594085	ENST00000249396		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
3UTR-5UTR	ENST00000594085	ENST00000392081		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
3UTR-5UTR	ENST00000594085	ENST00000358931		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
3UTR-intron	ENST00000594085	ENST00000481381		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-3CDS	ENST00000409735	ENST00000249396		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-5UTR	ENST00000409735	ENST00000392081		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-5UTR	ENST00000409735	ENST00000358931		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
5UTR-intron	ENST00000409735	ENST00000481381		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-3CDS	ENST00000356508	ENST00000249396		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-5UTR	ENST00000356508	ENST00000392081		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-5UTR	ENST00000356508	ENST00000358931		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-intron	ENST00000356508	ENST00000481381		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-3CDS	ENST00000409281	ENST00000249396		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-5UTR	ENST00000409281	ENST00000392081		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-5UTR	ENST00000409281	ENST00000358931		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
intron-intron	ENST00000409281	ENST00000481381		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLD3	chr19	40854675	+	SIRT2	chr19	39384507	-
Frame-shit	ENST00000367328	ENST00000367474		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLEKHG1	chr6	151089873	+	SAMD5	chr6	147885529	+
Frame-shit	ENST00000358517	ENST00000367474		TCGA	LD	BRCA	TCGA-E9-A248-01A	PLEKHG1	chr6	151089873	+	SAMD5	chr6	147885529	+
Frame-shit	ENST00000367121	ENST00000368911		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-5UTR	ENST00000367121	ENST00000323817		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000367121	ENST00000413605		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000367121	ENST00000497709		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
Frame-shit	ENST00000367122	ENST00000368911		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-5UTR	ENST00000367122	ENST00000323817		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000367122	ENST00000413605		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000367122	ENST00000497709		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
Frame-shit	ENST00000355585	ENST00000368911		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-5UTR	ENST00000355585	ENST00000323817		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000355585	ENST00000413605		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000355585	ENST00000497709		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
In-frame	ENST00000449859	ENST00000368911		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-5UTR	ENST00000449859	ENST00000323817		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000449859	ENST00000413605		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
5CDS-intron	ENST00000449859	ENST00000497709		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
intron-3CDS	ENST00000367112	ENST00000368911		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
intron-5UTR	ENST00000367112	ENST00000323817		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
intron-intron	ENST00000367112	ENST00000413605		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
intron-intron	ENST00000367112	ENST00000497709		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158487667	+	CDK19	chr6	111067404	-
Frame-shit	ENST00000367121	ENST00000414563		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000367121	ENST00000359775		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000367121	ENST00000341375		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000367122	ENST00000414563		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000367122	ENST00000359775		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000367122	ENST00000341375		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000355585	ENST00000414563		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000355585	ENST00000359775		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000355585	ENST00000341375		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
intron-3CDS	ENST00000449859	ENST00000414563		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
intron-3CDS	ENST00000449859	ENST00000359775		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
intron-intron	ENST00000449859	ENST00000341375		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
intron-3CDS	ENST00000367112	ENST00000414563		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
intron-3CDS	ENST00000367112	ENST00000359775		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
intron-intron	ENST00000367112	ENST00000341375		TCGA	LD	BRCA	TCGA-E9-A248-01A	SYNJ2	chr6	158403120	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000275159	ENST00000422819		TCGA	LD	BRCA	TCGA-E9-A248-01A	TBC1D32	chr6	121600267	-	CCDC162P	chr6	109505130	+
5CDS-intron	ENST00000398212	ENST00000422819		TCGA	LD	BRCA	TCGA-E9-A248-01A	TBC1D32	chr6	121600267	-	CCDC162P	chr6	109505130	+
intron-intron	ENST00000398197	ENST00000422819		TCGA	LD	BRCA	TCGA-E9-A248-01A	TBC1D32	chr6	121600267	-	CCDC162P	chr6	109505130	+
5CDS-5UTR	ENST00000286827	ENST00000318948		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000286827	ENST00000400199		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000286827	ENST00000400202		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000541036	ENST00000318948		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000541036	ENST00000400199		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000541036	ENST00000400202		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
intron-5UTR	ENST00000469412	ENST00000318948		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
intron-5UTR	ENST00000469412	ENST00000400199		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
intron-5UTR	ENST00000469412	ENST00000400202		TCGA	LD	BRCA	TCGA-E9-A248-01A	TIAM1	chr21	32638326	-	NRIP1	chr21	16340847	-
Frame-shit	ENST00000534312	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
Frame-shit	ENST00000534312	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000534312	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000534312	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000534312	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000395850	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000395850	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000395850	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000395850	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000395850	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000533403	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000533403	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000533403	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000533403	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000533403	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000351554	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000351554	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000351554	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000351554	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000351554	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000415002	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000415002	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000415002	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000415002	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000415002	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000445143	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000445143	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000445143	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000445143	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000445143	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000426650	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000426650	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000426650	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000426650	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000426650	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000437761	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000437761	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000437761	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000437761	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000437761	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000527577	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000527577	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000527577	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000527577	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000527577	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000528700	ENST00000323959		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000528700	ENST00000524827		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000528700	ENST00000526480		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000528700	ENST00000438862		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000528700	ENST00000431742		TCGA	LD	BRCA	TCGA-E9-A295-01A	CD59	chr11	33731752	-	CSTF3	chr11	33163532	-
In-frame	ENST00000344099	ENST00000380456		TCGA	LD	BRCA	TCGA-E9-A295-01A	ZNF14	chr19	19843765	-	RGL3	chr19	11513382	-
5CDS-intron	ENST00000344099	ENST00000568628		TCGA	LD	BRCA	TCGA-E9-A295-01A	ZNF14	chr19	19843765	-	RGL3	chr19	11513382	-
5CDS-intron	ENST00000344099	ENST00000393423		TCGA	LD	BRCA	TCGA-E9-A295-01A	ZNF14	chr19	19843765	-	RGL3	chr19	11513382	-
3UTR-intron	ENST00000487159	ENST00000560208		TCGA	LD	BRCA	TCGA-E9-A2JS-01A	TRAK1	chr3	42167106	+	CRNDE	chr16	54887480	-
5CDS-intron	ENST00000327628	ENST00000560208		TCGA	LD	BRCA	TCGA-E9-A2JS-01A	TRAK1	chr3	42167106	+	CRNDE	chr16	54887480	-
intron-intron	ENST00000449246	ENST00000560208		TCGA	LD	BRCA	TCGA-E9-A2JS-01A	TRAK1	chr3	42167106	+	CRNDE	chr16	54887480	-
intron-intron	ENST00000341421	ENST00000560208		TCGA	LD	BRCA	TCGA-E9-A2JS-01A	TRAK1	chr3	42167106	+	CRNDE	chr16	54887480	-
intron-intron	ENST00000396175	ENST00000560208		TCGA	LD	BRCA	TCGA-E9-A2JS-01A	TRAK1	chr3	42167106	+	CRNDE	chr16	54887480	-
5CDS-intron	ENST00000368096	ENST00000420696		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000401534		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000559240		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000367897		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000540236		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000560641		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-3UTR	ENST00000368096	ENST00000474046		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000485769		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368096	ENST00000540246		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000420696		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000401534		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000559240		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000367897		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000540236		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000560641		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-3UTR	ENST00000368097	ENST00000474046		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000485769		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000368097	ENST00000540246		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000420696		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000401534		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000559240		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000367897		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000540236		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000560641		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-3UTR	ENST00000478033	ENST00000474046		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000485769		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
intron-intron	ENST00000478033	ENST00000540246		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000420696		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000401534		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000559240		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000367897		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000540236		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000560641		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-3UTR	ENST00000320307	ENST00000474046		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000485769		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-intron	ENST00000320307	ENST00000540246		TCGA	LD	BRCA	TCGA-E9-A3HO-01A	TAGLN2	chr1	159889064	-	PBX1	chr1	164651547	+
5CDS-3UTR	ENST00000325974	ENST00000421890		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	CCZ1	chr7	5959597	+	ZNF815P	chr7	5873158	+
5CDS-3UTR	ENST00000537980	ENST00000421890		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	CCZ1	chr7	5959597	+	ZNF815P	chr7	5873158	+
intron-3UTR	ENST00000496860	ENST00000421890		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	CCZ1	chr7	5959597	+	ZNF815P	chr7	5873158	+
intron-3CDS	ENST00000541592	ENST00000471595		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000478469		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000251654		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000483687		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000490504		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000466072		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000482086		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000468777		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000462637		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000541592	ENST00000469217		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3UTR	ENST00000541592	ENST00000474833		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000471595		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000478469		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000251654		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000483687		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000490504		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000466072		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000482086		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000468777		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000462637		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3CDS	ENST00000539745	ENST00000469217		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
intron-3UTR	ENST00000539745	ENST00000474833		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	HIST4H4	chr12	14923613	-	PCCB	chr3	136002679	+
5CDS-5UTR	ENST00000379170	ENST00000368811		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	MCUR1	chr6	13800573	-	S100A10	chr1	151958727	-
5CDS-5UTR	ENST00000379170	ENST00000368809		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	MCUR1	chr6	13800573	-	S100A10	chr1	151958727	-
5CDS-5UTR	ENST00000379170	ENST00000478574		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	MCUR1	chr6	13800573	-	S100A10	chr1	151958727	-
intron-5UTR	ENST00000359495	ENST00000368811		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	MCUR1	chr6	13800573	-	S100A10	chr1	151958727	-
intron-5UTR	ENST00000359495	ENST00000368809		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	MCUR1	chr6	13800573	-	S100A10	chr1	151958727	-
intron-5UTR	ENST00000359495	ENST00000478574		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	MCUR1	chr6	13800573	-	S100A10	chr1	151958727	-
In-frame	ENST00000379540	ENST00000379725		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000379540	ENST00000379723		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000379540	ENST00000379721		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
In-frame	ENST00000379521	ENST00000379725		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000379521	ENST00000379723		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000379521	ENST00000379721		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
In-frame	ENST00000318524	ENST00000379725		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000318524	ENST00000379723		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000318524	ENST00000379721		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
intron-3CDS	ENST00000463421	ENST00000379725		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
intron-intron	ENST00000463421	ENST00000379723		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
intron-intron	ENST00000463421	ENST00000379721		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	NFX1	chr9	33319125	+	SPINK4	chr9	33218363	+
In-frame	ENST00000580170	ENST00000579973		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000580170	ENST00000417602		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000580170	ENST00000317932		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000580170	ENST00000408011		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000580170	ENST00000580059		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
5CDS-intron	ENST00000580170	ENST00000584630		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000332175	ENST00000579973		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000332175	ENST00000417602		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000332175	ENST00000317932		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000332175	ENST00000408011		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000332175	ENST00000580059		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
5CDS-intron	ENST00000332175	ENST00000584630		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400060	ENST00000579973		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400060	ENST00000417602		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400060	ENST00000317932		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400060	ENST00000408011		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400060	ENST00000580059		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
5CDS-intron	ENST00000400060	ENST00000584630		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400053	ENST00000579973		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400053	ENST00000417602		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400053	ENST00000317932		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400053	ENST00000408011		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
In-frame	ENST00000400053	ENST00000580059		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
5CDS-intron	ENST00000400053	ENST00000584630		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000444013	ENST00000579973		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000444013	ENST00000417602		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000444013	ENST00000317932		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000444013	ENST00000408011		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000444013	ENST00000580059		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-intron	ENST00000444013	ENST00000584630		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000578571	ENST00000579973		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000578571	ENST00000417602		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000578571	ENST00000317932		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000578571	ENST00000408011		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000578571	ENST00000580059		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-intron	ENST00000578571	ENST00000584630		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	PTPRM	chr18	7926681	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000307980	ENST00000308127		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-intron	ENST00000307980	ENST00000308298		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-intron	ENST00000307980	ENST00000376757		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-3UTR	ENST00000307980	ENST00000532181		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-3CDS	ENST00000535644	ENST00000308127		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-intron	ENST00000535644	ENST00000308298		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-intron	ENST00000535644	ENST00000376757		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
intron-3UTR	ENST00000535644	ENST00000532181		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	RAD9A	chr11	67088804	+	SSH3	chr11	67076868	+
In-frame	ENST00000358430	ENST00000542213		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
5CDS-3UTR	ENST00000358430	ENST00000370125		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
5CDS-3UTR	ENST00000358430	ENST00000361544		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
5CDS-3UTR	ENST00000358430	ENST00000370124		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
5CDS-3UTR	ENST00000358430	ENST00000336454		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
5CDS-3UTR	ENST00000358430	ENST00000544534		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
5CDS-intron	ENST00000358430	ENST00000469387		TCGA	LD	BRCA	TCGA-E9-A3QA-01A	TXLNB	chr6	139597967	-	CDC14A	chr1	100949848	+
In-frame	ENST00000296777	ENST00000340941		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
Frame-shit	ENST00000296777	ENST00000509358		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
In-frame	ENST00000296777	ENST00000323375		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
5CDS-intron	ENST00000296777	ENST00000510895		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
3UTR-3CDS	ENST00000513096	ENST00000340941		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
3UTR-3CDS	ENST00000513096	ENST00000509358		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
3UTR-3CDS	ENST00000513096	ENST00000323375		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
3UTR-intron	ENST00000513096	ENST00000510895		TCGA	LD	BRCA	TCGA-E9-A54X-01A	CARTPT	chr5	71015790	+	MCCC2	chr5	70936830	+
In-frame	ENST00000380249	ENST00000263112		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000380249	ENST00000327365		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000380249	ENST00000398292		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
5CDS-intron	ENST00000380249	ENST00000418439		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000338382	ENST00000263112		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000338382	ENST00000327365		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000338382	ENST00000398292		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
5CDS-intron	ENST00000338382	ENST00000418439		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000605086	ENST00000263112		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000605086	ENST00000327365		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
In-frame	ENST00000605086	ENST00000398292		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
5CDS-intron	ENST00000605086	ENST00000418439		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
intron-3CDS	ENST00000604828	ENST00000263112		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
intron-3CDS	ENST00000604828	ENST00000327365		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
intron-3CDS	ENST00000604828	ENST00000398292		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
intron-intron	ENST00000604828	ENST00000418439		TCGA	LD	BRCA	TCGA-E9-A54X-01A	FOCAD	chr9	20929595	+	GGT5	chr22	24629972	-
Frame-shit	ENST00000369331	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369331	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369331	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369321	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369321	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369321	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000345633	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000345633	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000345633	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369318	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369318	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369318	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369315	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000369315	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369315	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000452490	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000452490	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000452490	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000468790	ENST00000432306		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000468790	ENST00000393077		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000468790	ENST00000483122		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	CASP7	chr10	115457362	+	VTI1A	chr10	114286846	+
In-frame	ENST00000260118	ENST00000523096		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
In-frame	ENST00000260118	ENST00000220669		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-5UTR	ENST00000260118	ENST00000522520		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-intron	ENST00000260118	ENST00000519338		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-5UTR	ENST00000260118	ENST00000521895		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-5UTR	ENST00000260118	ENST00000521287		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-5UTR	ENST00000260118	ENST00000517588		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-5UTR	ENST00000260118	ENST00000519523		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-3CDS	ENST00000518113	ENST00000523096		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-3CDS	ENST00000518113	ENST00000220669		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-5UTR	ENST00000518113	ENST00000522520		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-intron	ENST00000518113	ENST00000519338		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-5UTR	ENST00000518113	ENST00000521895		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-5UTR	ENST00000518113	ENST00000521287		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-5UTR	ENST00000518113	ENST00000517588		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
intron-5UTR	ENST00000518113	ENST00000519523		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GGH	chr8	63930052	-	ZFAND1	chr8	82630459	-
5CDS-intron	ENST00000392552	ENST00000348749		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392552	ENST00000261007		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392552	ENST00000409219		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392552	ENST00000409542		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392552	ENST00000409323		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392551	ENST00000348749		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392551	ENST00000261007		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392551	ENST00000409219		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392551	ENST00000409542		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000392551	ENST00000409323		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000295500	ENST00000348749		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000295500	ENST00000261007		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000295500	ENST00000409219		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000295500	ENST00000409542		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000295500	ENST00000409323		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000459996	ENST00000348749		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000459996	ENST00000261007		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000459996	ENST00000409219		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000459996	ENST00000409542		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000459996	ENST00000409323		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	GPR155	chr2	175326130	-	CHRNA1	chr2	175649597	-
5UTR-3CDS	ENST00000571589	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-3CDS	ENST00000571589	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000571589	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000571589	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000571589	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-3CDS	ENST00000574045	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-3CDS	ENST00000574045	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000574045	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000574045	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000574045	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-3CDS	ENST00000318282	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-3CDS	ENST00000318282	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000318282	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000318282	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
5UTR-intron	ENST00000318282	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000572567	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000572567	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000572567	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000572567	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000572567	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000341243	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000341243	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000341243	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000341243	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000341243	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
3UTR-3CDS	ENST00000575537	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
3UTR-3CDS	ENST00000575537	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
3UTR-intron	ENST00000575537	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
3UTR-intron	ENST00000575537	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
3UTR-intron	ENST00000575537	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000573051	ENST00000424107		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-3CDS	ENST00000573051	ENST00000558583		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000573051	ENST00000558318		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000573051	ENST00000423335		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
intron-intron	ENST00000573051	ENST00000482916		TCGA	LD	BRCA	TCGA-E9-A5FL-01A	MKL2	chr16	14173211	+	SHISA9	chr16	13297251	+
Frame-shit	ENST00000572681	ENST00000334370		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
Frame-shit	ENST00000572681	ENST00000251268		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
5CDS-intron	ENST00000572681	ENST00000378073		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-3CDS	ENST00000575839	ENST00000334370		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-3CDS	ENST00000575839	ENST00000251268		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-intron	ENST00000575839	ENST00000378073		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-3CDS	ENST00000160740	ENST00000334370		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-3CDS	ENST00000160740	ENST00000251268		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-intron	ENST00000160740	ENST00000378073		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-3CDS	ENST00000575354	ENST00000334370		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-3CDS	ENST00000575354	ENST00000251268		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
intron-intron	ENST00000575354	ENST00000378073		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	CIC	chr19	42778416	+	MEGF8	chr19	42855368	+
In-frame	ENST00000371383	ENST00000261172		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	ENPP5	chr6	46133124	-	EPYC	chr12	91358103	-
Frame-shit	ENST00000230565	ENST00000261172		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	ENPP5	chr6	46133124	-	EPYC	chr12	91358103	-
intron-3CDS	ENST00000492313	ENST00000261172		TCGA	LD	BRCA	TCGA-E9-A5UO-01A	ENPP5	chr6	46133124	-	EPYC	chr12	91358103	-
Frame-shit	ENST00000371754	ENST00000373973		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000371754	ENST00000349339		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000371754	ENST00000538900		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000469991	ENST00000373973		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000469991	ENST00000349339		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000469991	ENST00000538900		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000371752	ENST00000373973		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000371752	ENST00000349339		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000371752	ENST00000538900		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000396105	ENST00000373973		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000396105	ENST00000349339		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
Frame-shit	ENST00000396105	ENST00000538900		TCGA	LD	BRCA	TCGA-E9-A5UP-01A	ZNFX1	chr20	47886479	-	CNBD2	chr20	34560551	+
5CDS-5UTR	ENST00000421419	ENST00000377559		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-5UTR	ENST00000421419	ENST00000265459		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000421419	ENST00000301894		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000421419	ENST00000377551		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000421419	ENST00000409571		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000421419	ENST00000496291		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-5UTR	ENST00000377264	ENST00000377559		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-5UTR	ENST00000377264	ENST00000265459		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000377264	ENST00000301894		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000377264	ENST00000377551		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000377264	ENST00000409571		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
5CDS-intron	ENST00000377264	ENST00000496291		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ATG2A	chr11	64669434	-	NRXN2	chr11	64481415	-
Frame-shit	ENST00000394287	ENST00000378079		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MED1	chr17	37590502	-	FBXO47	chr17	37094985	-
Frame-shit	ENST00000300651	ENST00000378079		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MED1	chr17	37590502	-	FBXO47	chr17	37094985	-
5CDS-5UTR	ENST00000318217	ENST00000304046		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000318217	ENST00000579695		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000318217	ENST00000394169		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000318217	ENST00000584220		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000318217	ENST00000582052		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000394649	ENST00000304046		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000394649	ENST00000579695		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000394649	ENST00000394169		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000394649	ENST00000584220		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000394649	ENST00000582052		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000579584	ENST00000304046		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000579584	ENST00000579695		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000579584	ENST00000394169		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000579584	ENST00000584220		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000579584	ENST00000582052		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000584232	ENST00000304046		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000584232	ENST00000579695		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000584232	ENST00000394169		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000584232	ENST00000584220		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000584232	ENST00000582052		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000583621	ENST00000304046		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000583621	ENST00000579695		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000583621	ENST00000394169		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000583621	ENST00000584220		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000583621	ENST00000582052		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	MYO1D	chr17	31039006	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000375759	ENST00000483512		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	SPEN	chr1	16255651	+	CNIH3	chr1	224927031	+
5CDS-intron	ENST00000375759	ENST00000272133		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	SPEN	chr1	16255651	+	CNIH3	chr1	224927031	+
intron-intron	ENST00000471538	ENST00000483512		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	SPEN	chr1	16255651	+	CNIH3	chr1	224927031	+
intron-intron	ENST00000471538	ENST00000272133		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	SPEN	chr1	16255651	+	CNIH3	chr1	224927031	+
5CDS-5UTR	ENST00000294309	ENST00000254066		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000294309	ENST00000394089		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000294309	ENST00000425707		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000294309	ENST00000394086		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000294309	ENST00000394081		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000294309	ENST00000420042		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000542467	ENST00000254066		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000542467	ENST00000394089		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000542467	ENST00000425707		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000542467	ENST00000394086		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000542467	ENST00000394081		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000542467	ENST00000420042		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
3UTR-5UTR	ENST00000442692	ENST00000254066		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
3UTR-5UTR	ENST00000442692	ENST00000394089		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
3UTR-5UTR	ENST00000442692	ENST00000425707		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
3UTR-intron	ENST00000442692	ENST00000394086		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
3UTR-intron	ENST00000442692	ENST00000394081		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
3UTR-intron	ENST00000442692	ENST00000420042		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	TPCN2	chr11	68830458	+	RARA	chr17	38487109	+
5CDS-intron	ENST00000370920	ENST00000431530		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000370920	ENST00000380808		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000370920	ENST00000542829		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000370920	ENST00000400542		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
intron-intron	ENST00000477096	ENST00000431530		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
intron-intron	ENST00000477096	ENST00000380808		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
intron-intron	ENST00000477096	ENST00000542829		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
intron-intron	ENST00000477096	ENST00000400542		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000254821	ENST00000431530		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000254821	ENST00000380808		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000254821	ENST00000542829		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5CDS-intron	ENST00000254821	ENST00000400542		TCGA	LD	BRCA	TCGA-EW-A1IW-01A	ZRANB2	chr1	71546623	-	MTUS2	chr13	29598594	+
5UTR-3CDS	ENST00000536378	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000536378	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000536378	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000536378	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
Frame-shit	ENST00000231790	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5CDS-intron	ENST00000231790	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5CDS-intron	ENST00000231790	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5CDS-intron	ENST00000231790	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-3CDS	ENST00000458205	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000458205	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000458205	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000458205	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
intron-3CDS	ENST00000539477	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
intron-intron	ENST00000539477	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
intron-intron	ENST00000539477	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
intron-intron	ENST00000539477	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-3CDS	ENST00000455445	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000455445	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000455445	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5UTR-intron	ENST00000455445	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
Frame-shit	ENST00000435176	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5CDS-intron	ENST00000435176	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5CDS-intron	ENST00000435176	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
5CDS-intron	ENST00000435176	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
3UTR-3CDS	ENST00000492474	ENST00000361924		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
3UTR-intron	ENST00000492474	ENST00000435830		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
3UTR-intron	ENST00000492474	ENST00000444882		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
3UTR-intron	ENST00000492474	ENST00000356847		TCGA	LD	BRCA	TCGA-EW-A1IZ-01A	MLH1	chr3	37050396	+	GOLGA4	chr3	37376544	+
In-frame	ENST00000431231	ENST00000389934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000431231	ENST00000349033		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000431231	ENST00000240361		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
5CDS-intron	ENST00000431231	ENST00000584699		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000437668	ENST00000389934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000437668	ENST00000349033		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000437668	ENST00000240361		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
5CDS-intron	ENST00000437668	ENST00000584699		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
intron-3CDS	ENST00000582409	ENST00000389934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
intron-3CDS	ENST00000582409	ENST00000349033		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
intron-3CDS	ENST00000582409	ENST00000240361		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
intron-intron	ENST00000582409	ENST00000584699		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000443378	ENST00000389934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000443378	ENST00000349033		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000443378	ENST00000240361		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
5CDS-intron	ENST00000443378	ENST00000584699		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ARHGAP23	chr17	36642381	+	TEX14	chr17	56707915	-
In-frame	ENST00000393829	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000393829	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000393829	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000393829	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000393829	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000393829	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000546249	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000546249	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000546249	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000546249	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000546249	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000546249	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000537728	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000537728	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000537728	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000537728	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000537728	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000537728	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000264649	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000264649	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000264649	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000264649	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000264649	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000264649	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000585525	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000585525	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000585525	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000585525	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000585525	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000585525	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000343619	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000343619	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000343619	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000343619	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
In-frame	ENST00000343619	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
5CDS-3UTR	ENST00000343619	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000544137	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000544137	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000544137	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000544137	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000544137	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3UTR	ENST00000544137	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000587797	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000587797	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000587797	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000587797	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000587797	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3UTR	ENST00000587797	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ATP6V0A1	chr17	40635149	+	MSI2	chr17	55607037	+
intron-3CDS	ENST00000392347	ENST00000331134		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392347	ENST00000374747		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392347	ENST00000539314		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392347	ENST00000572760		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392347	ENST00000573876		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392347	ENST00000574344		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-3CDS	ENST00000389641	ENST00000331134		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000389641	ENST00000374747		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000389641	ENST00000539314		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000389641	ENST00000572760		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000389641	ENST00000573876		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000389641	ENST00000574344		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
Frame-shit	ENST00000392346	ENST00000331134		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000392346	ENST00000374747		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000392346	ENST00000539314		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000392346	ENST00000572760		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000392346	ENST00000573876		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000392346	ENST00000574344		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-3CDS	ENST00000327026	ENST00000331134		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000327026	ENST00000374747		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000327026	ENST00000539314		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000327026	ENST00000572760		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000327026	ENST00000573876		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000327026	ENST00000574344		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-3CDS	ENST00000392343	ENST00000331134		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392343	ENST00000374747		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392343	ENST00000539314		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392343	ENST00000572760		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392343	ENST00000573876		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
intron-intron	ENST00000392343	ENST00000574344		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CCDC57	chr17	80109436	-	NPLOC4	chr17	79526442	-
Frame-shit	ENST00000393043	ENST00000328801		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CLTC	chr17	57761117	+	OTOP3	chr17	72942756	+
Frame-shit	ENST00000269122	ENST00000328801		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CLTC	chr17	57761117	+	OTOP3	chr17	72942756	+
Frame-shit	ENST00000579456	ENST00000328801		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CLTC	chr17	57761117	+	OTOP3	chr17	72942756	+
intron-3CDS	ENST00000579815	ENST00000328801		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	CLTC	chr17	57761117	+	OTOP3	chr17	72942756	+
intron-3CDS	ENST00000585421	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000585421	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000585421	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000585421	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000585421	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3UTR	ENST00000585421	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000536189	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000536189	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000536189	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000536189	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000536189	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3UTR	ENST00000536189	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
Frame-shit	ENST00000262768	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
Frame-shit	ENST00000262768	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
Frame-shit	ENST00000262768	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
Frame-shit	ENST00000262768	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
Frame-shit	ENST00000262768	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
5CDS-3UTR	ENST00000262768	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000586057	ENST00000416426		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000586057	ENST00000284073		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000586057	ENST00000322684		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000586057	ENST00000442934		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3CDS	ENST00000586057	ENST00000579180		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
intron-3UTR	ENST00000586057	ENST00000579505		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	TIMP2	chr17	76921041	-	MSI2	chr17	55674229	+
5CDS-5UTR	ENST00000300896	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000300896	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592339	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000393003	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000586881	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP32	chr17	58282808	-	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
3UTR-5UTR	ENST00000332776	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000574788	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000304328	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000250066	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000586683		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000252445		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000587806		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000589171		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000591674		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000586120		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000590700		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000572429	ENST00000591912		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	USP6	chr17	5052062	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000396516	ENST00000259119		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000396516	ENST00000426052		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000396516	ENST00000490989		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000396516	ENST00000413427		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000396516	ENST00000458537		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000355758	ENST00000259119		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000355758	ENST00000426052		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-3UTR	ENST00000355758	ENST00000490989		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000355758	ENST00000413427		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000355758	ENST00000458537		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000575984	ENST00000259119		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000575984	ENST00000426052		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000575984	ENST00000490989		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000575984	ENST00000413427		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000575984	ENST00000458537		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000575170	ENST00000259119		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000575170	ENST00000426052		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-3UTR	ENST00000575170	ENST00000490989		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000575170	ENST00000413427		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000575170	ENST00000458537		TCGA	LD	BRCA	TCGA-EW-A1J1-01A	ZC3H7A	chr16	11890980	-	SKIL	chr3	170077487	+
Frame-shit	ENST00000270112	ENST00000399786		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
Frame-shit	ENST00000270112	ENST00000339944		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
5CDS-3UTR	ENST00000270112	ENST00000497833		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
5CDS-3UTR	ENST00000270112	ENST00000399784		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
5CDS-3UTR	ENST00000270112	ENST00000303645		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
intron-3CDS	ENST00000465574	ENST00000399786		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
intron-3CDS	ENST00000465574	ENST00000339944		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
intron-3UTR	ENST00000465574	ENST00000497833		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
intron-3UTR	ENST00000465574	ENST00000399784		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
intron-3UTR	ENST00000465574	ENST00000303645		TCGA	LD	BRCA	TCGA-EW-A1J2-01A	HUNK	chr21	33297072	+	MRAP	chr21	33678951	+
intron-3CDS	ENST00000583610	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000583610	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-intron	ENST00000583610	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000394294	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000394294	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-intron	ENST00000394294	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000264658	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000264658	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-intron	ENST00000264658	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000577399	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3CDS	ENST00000577399	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-intron	ENST00000577399	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	FBXL20	chr17	37414558	-	CDK12	chr17	37665958	+
intron-3UTR	ENST00000394126	ENST00000254051		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	MED24	chr17	38207763	-	TNS4	chr17	38633652	-
intron-3UTR	ENST00000356271	ENST00000254051		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	MED24	chr17	38207763	-	TNS4	chr17	38633652	-
intron-3UTR	ENST00000394128	ENST00000254051		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	MED24	chr17	38207763	-	TNS4	chr17	38633652	-
intron-3UTR	ENST00000394127	ENST00000254051		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	MED24	chr17	38207763	-	TNS4	chr17	38633652	-
intron-3UTR	ENST00000501516	ENST00000254051		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	MED24	chr17	38207763	-	TNS4	chr17	38633652	-
intron-3UTR	ENST00000479829	ENST00000254051		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	MED24	chr17	38207763	-	TNS4	chr17	38633652	-
5UTR-5UTR	ENST00000254066	ENST00000264657		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
5UTR-5UTR	ENST00000254066	ENST00000585517		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
5UTR-intron	ENST00000254066	ENST00000389272		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
5UTR-5UTR	ENST00000254066	ENST00000588969		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
5UTR-5UTR	ENST00000254066	ENST00000404395		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
5UTR-intron	ENST00000254066	ENST00000590776		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394089	ENST00000264657		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394089	ENST00000585517		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000394089	ENST00000389272		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394089	ENST00000588969		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394089	ENST00000404395		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000394089	ENST00000590776		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000425707	ENST00000264657		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000425707	ENST00000585517		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000425707	ENST00000389272		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000425707	ENST00000588969		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000425707	ENST00000404395		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000425707	ENST00000590776		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394086	ENST00000264657		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394086	ENST00000585517		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000394086	ENST00000389272		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394086	ENST00000588969		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394086	ENST00000404395		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000394086	ENST00000590776		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394081	ENST00000264657		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394081	ENST00000585517		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000394081	ENST00000389272		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394081	ENST00000588969		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000394081	ENST00000404395		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000394081	ENST00000590776		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000420042	ENST00000264657		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000420042	ENST00000585517		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000420042	ENST00000389272		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000420042	ENST00000588969		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-5UTR	ENST00000420042	ENST00000404395		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
intron-intron	ENST00000420042	ENST00000590776		TCGA	LD	BRCA	TCGA-EW-A1J3-01A	RARA	chr17	38465538	+	STAT3	chr17	40500538	-
Frame-shit	ENST00000340253	ENST00000395246		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000340253	ENST00000504701		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000340253	ENST00000503291		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000340253	ENST00000360515		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000340253	ENST00000505065		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
Frame-shit	ENST00000296701	ENST00000395246		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000296701	ENST00000504701		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000296701	ENST00000503291		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000296701	ENST00000360515		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000296701	ENST00000505065		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
Frame-shit	ENST00000394370	ENST00000395246		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000394370	ENST00000504701		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000394370	ENST00000503291		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000394370	ENST00000360515		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000394370	ENST00000505065		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
intron-3CDS	ENST00000509699	ENST00000395246		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
intron-intron	ENST00000509699	ENST00000504701		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
intron-5UTR	ENST00000509699	ENST00000503291		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
intron-5UTR	ENST00000509699	ENST00000360515		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
intron-5UTR	ENST00000509699	ENST00000505065		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
Frame-shit	ENST00000513826	ENST00000395246		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000513826	ENST00000504701		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000513826	ENST00000503291		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000513826	ENST00000360515		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-5UTR	ENST00000513826	ENST00000505065		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	FBXO38	chr5	147820800	+	CDC42SE2	chr5	130721236	+
5CDS-intron	ENST00000260113	ENST00000521096		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	PI15	chr8	75737757	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000260113	ENST00000220822		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	PI15	chr8	75737757	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000260113	ENST00000434412		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	PI15	chr8	75737757	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000523773	ENST00000521096		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	PI15	chr8	75737757	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000523773	ENST00000220822		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	PI15	chr8	75737757	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000523773	ENST00000434412		TCGA	LD	BRCA	TCGA-EW-A1J6-01A	PI15	chr8	75737757	+	GDAP1	chr8	75400913	+
5CDS-3UTR	ENST00000420083	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000420083	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000420083	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000449870	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000449870	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000449870	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000318511	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000318511	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000318511	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000407004	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000407004	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000407004	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000589998	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000589998	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000589998	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000250241	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000250241	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000250241	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000592763	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000592763	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000592763	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000588657	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000588657	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000588657	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-3UTR	ENST00000590261	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000590261	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5CDS-intron	ENST00000590261	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
intron-3UTR	ENST00000586544	ENST00000588651		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
intron-intron	ENST00000586544	ENST00000361113		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
intron-intron	ENST00000586544	ENST00000588174		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	ILF3	chr19	10787986	+	ZNF627	chr19	11686065	+
5UTR-3CDS	ENST00000361781	ENST00000373237		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	SGMS1	chr10	52193236	-	PSMB2	chr1	36102033	-
intron-3CDS	ENST00000429490	ENST00000373237		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	SGMS1	chr10	52193236	-	PSMB2	chr1	36102033	-
intron-3CDS	ENST00000492601	ENST00000373237		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	SGMS1	chr10	52193236	-	PSMB2	chr1	36102033	-
intron-3CDS	ENST00000361543	ENST00000373237		TCGA	LD	BRCA	TCGA-EW-A1OV-01A	SGMS1	chr10	52193236	-	PSMB2	chr1	36102033	-
5CDS-intron	ENST00000294785	ENST00000548589		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000294785	ENST00000552699		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000294785	ENST00000267115		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000294785	ENST00000549385		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000294785	ENST00000423828		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000294785	ENST00000395006		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000294785	ENST00000547798		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000548589		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000552699		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000267115		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000549385		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000423828		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000395006		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5UTR-intron	ENST00000368063	ENST00000547798		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000548589		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000552699		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000267115		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000549385		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000423828		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000395006		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000535857	ENST00000547798		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000548589		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000552699		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000267115		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000549385		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000423828		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000395006		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000392212	ENST00000547798		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000548589		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000552699		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000267115		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000549385		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000423828		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000395006		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000459963	ENST00000547798		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000548589		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000552699		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000267115		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000549385		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000423828		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000395006		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
intron-intron	ENST00000368065	ENST00000547798		TCGA	LD	BRCA	TCGA-EW-A1OW-01A	NCSTN	chr1	160313271	+	TMBIM6	chr12	50153004	+
5CDS-intron	ENST00000305921	ENST00000450662		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	PPM1D	chr17	58711338	+	EFCAB3	chr17	60446532	+
5CDS-intron	ENST00000305921	ENST00000305286		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	PPM1D	chr17	58711338	+	EFCAB3	chr17	60446532	+
Frame-shit	ENST00000355528	ENST00000269373		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
Frame-shit	ENST00000355528	ENST00000535965		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
intron-3CDS	ENST00000397466	ENST00000269373		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
intron-3CDS	ENST00000397466	ENST00000535965		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
Frame-shit	ENST00000539345	ENST00000269373		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
Frame-shit	ENST00000539345	ENST00000535965		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
intron-3CDS	ENST00000576691	ENST00000269373		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
intron-3CDS	ENST00000576691	ENST00000535965		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80867183	+	FN3KRP	chr17	80684709	+
5CDS-intron	ENST00000355528	ENST00000299341		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000355528	ENST00000376352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000355528	ENST00000405898		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000355528	ENST00000434978		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000355528	ENST00000398391		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000397466	ENST00000299341		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000397466	ENST00000376352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000397466	ENST00000405898		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000397466	ENST00000434978		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000397466	ENST00000398391		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000539345	ENST00000299341		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000539345	ENST00000376352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000539345	ENST00000405898		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000539345	ENST00000434978		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
5CDS-intron	ENST00000539345	ENST00000398391		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
intron-intron	ENST00000576691	ENST00000299341		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
intron-intron	ENST00000576691	ENST00000376352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
intron-intron	ENST00000576691	ENST00000405898		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
intron-intron	ENST00000576691	ENST00000434978		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
intron-intron	ENST00000576691	ENST00000398391		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	TBCD	chr17	80863929	+	STXBP4	chr17	53218671	+
intron-3CDS	ENST00000513488	ENST00000375352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	ZNF652	chr17	47394188	-	CD300LD	chr17	72578450	-
In-frame	ENST00000362063	ENST00000375352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	ZNF652	chr17	47394188	-	CD300LD	chr17	72578450	-
In-frame	ENST00000430262	ENST00000375352		TCGA	LD	BRCA	TCGA-EW-A1OX-01A	ZNF652	chr17	47394188	-	CD300LD	chr17	72578450	-
In-frame	ENST00000292147	ENST00000251566		TCGA	LD	BRCA	TCGA-EW-A1OY-01A	ETHE1	chr19	44030353	-	UGT2A3	chr4	69798477	-
5CDS-5UTR	ENST00000292147	ENST00000420231		TCGA	LD	BRCA	TCGA-EW-A1OY-01A	ETHE1	chr19	44030353	-	UGT2A3	chr4	69798477	-
5CDS-intron	ENST00000292147	ENST00000547910		TCGA	LD	BRCA	TCGA-EW-A1OY-01A	ETHE1	chr19	44030353	-	UGT2A3	chr4	69798477	-
In-frame	ENST00000600651	ENST00000251566		TCGA	LD	BRCA	TCGA-EW-A1OY-01A	ETHE1	chr19	44030353	-	UGT2A3	chr4	69798477	-
5CDS-5UTR	ENST00000600651	ENST00000420231		TCGA	LD	BRCA	TCGA-EW-A1OY-01A	ETHE1	chr19	44030353	-	UGT2A3	chr4	69798477	-
5CDS-intron	ENST00000600651	ENST00000547910		TCGA	LD	BRCA	TCGA-EW-A1OY-01A	ETHE1	chr19	44030353	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000280772	ENST00000339021		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000355803		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000325437		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000397514		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000397515		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000403747		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000566587		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000406620		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000280772	ENST00000402301		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000339021		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000355803		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000325437		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000397514		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000397515		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000403747		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000566587		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000406620		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000373827	ENST00000402301		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000339021		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000355803		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000325437		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000397514		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000397515		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000403747		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000566587		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000406620		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000355288	ENST00000402301		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000339021		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000355803		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000325437		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000397514		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000397515		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000403747		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000566587		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000406620		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000503366	ENST00000402301		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000339021		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000355803		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000325437		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000397514		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000397515		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000403747		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000566587		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000406620		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000510382	ENST00000402301		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000339021		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000355803		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000325437		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000397514		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000397515		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000403747		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000566587		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000406620		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
intron-intron	ENST00000460468	ENST00000402301		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	ANK3	chr10	62268232	-	UBE2I	chr16	1374731	+
Frame-shit	ENST00000330387	ENST00000318008		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
Frame-shit	ENST00000330387	ENST00000433206		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
Frame-shit	ENST00000330387	ENST00000435347		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000456390	ENST00000318008		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000456390	ENST00000433206		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000456390	ENST00000435347		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000452463	ENST00000318008		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000452463	ENST00000433206		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000452463	ENST00000435347		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000458726	ENST00000318008		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000458726	ENST00000433206		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000458726	ENST00000435347		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000468127	ENST00000318008		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000468127	ENST00000433206		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
intron-3CDS	ENST00000468127	ENST00000435347		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	CREB3L2	chr7	137569741	-	LASP1	chr17	37054665	+
In-frame	ENST00000225729	ENST00000311331		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	DRG2	chr17	17997287	+	ZNF624	chr17	16527823	-
5CDS-intron	ENST00000225729	ENST00000579983		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	DRG2	chr17	17997287	+	ZNF624	chr17	16527823	-
In-frame	ENST00000395726	ENST00000311331		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	DRG2	chr17	17997287	+	ZNF624	chr17	16527823	-
5CDS-intron	ENST00000395726	ENST00000579983		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	DRG2	chr17	17997287	+	ZNF624	chr17	16527823	-
In-frame	ENST00000583355	ENST00000311331		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	DRG2	chr17	17997287	+	ZNF624	chr17	16527823	-
5CDS-intron	ENST00000583355	ENST00000579983		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	DRG2	chr17	17997287	+	ZNF624	chr17	16527823	-
Frame-shit	ENST00000302386	ENST00000425538		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000302386	ENST00000343344		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000302386	ENST00000395988		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000577035	ENST00000425538		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000577035	ENST00000343344		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000577035	ENST00000395988		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
In-frame	ENST00000571129	ENST00000425538		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
In-frame	ENST00000571129	ENST00000343344		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000571129	ENST00000395988		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
In-frame	ENST00000571253	ENST00000425538		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
In-frame	ENST00000571253	ENST00000343344		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
5CDS-3UTR	ENST00000571253	ENST00000395988		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
intron-3CDS	ENST00000573928	ENST00000425538		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
intron-3CDS	ENST00000573928	ENST00000343344		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
intron-3UTR	ENST00000573928	ENST00000395988		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	GABARAP	chr17	7144661	-	MYOCD	chr17	12639478	+
Frame-shit	ENST00000336156	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
Frame-shit	ENST00000336156	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
In-frame	ENST00000336156	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
Frame-shit	ENST00000336156	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
5CDS-intron	ENST00000336156	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
5CDS-intron	ENST00000336156	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000391627	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000391627	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000391627	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000391627	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000391627	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000391627	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000251993	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000251993	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000251993	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000251993	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000251993	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000251993	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000474515	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000474515	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000474515	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000474515	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000474515	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000474515	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000443310	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000443310	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000443310	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000443310	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000443310	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000443310	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000496226	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000496226	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000496226	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000496226	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000496226	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000496226	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000492273	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000492273	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000492273	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-3CDS	ENST00000492273	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000492273	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
intron-intron	ENST00000492273	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	KIAA0930	chr22	45636521	-	ANK3	chr10	61898845	-
5CDS-3UTR	ENST00000379103	ENST00000540900		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000379103	ENST00000584423		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000379103	ENST00000247026		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000379103	ENST00000479218		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000460380	ENST00000540900		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000460380	ENST00000584423		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000460380	ENST00000247026		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000460380	ENST00000479218		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000508862	ENST00000540900		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000508862	ENST00000584423		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000508862	ENST00000247026		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000508862	ENST00000479218		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000379102	ENST00000540900		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000379102	ENST00000584423		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000379102	ENST00000247026		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000379102	ENST00000479218		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000503642	ENST00000540900		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000503642	ENST00000584423		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000503642	ENST00000247026		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000503642	ENST00000479218		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	LYRM9	chr17	26209595	-	NSRP1	chr17	28499560	+
5UTR-5UTR	ENST00000395468	ENST00000398472		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	MAPK1IP1L	chr14	55518521	+	KRTAP4-1	chr17	39341573	-
3UTR-5UTR	ENST00000554364	ENST00000398472		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	MAPK1IP1L	chr14	55518521	+	KRTAP4-1	chr17	39341573	-
Frame-shit	ENST00000407008	ENST00000535916		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
Frame-shit	ENST00000407008	ENST00000286428		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
5CDS-3UTR	ENST00000407008	ENST00000459836		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
3UTR-3CDS	ENST00000583517	ENST00000535916		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
3UTR-3CDS	ENST00000583517	ENST00000286428		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
3UTR-3UTR	ENST00000583517	ENST00000459836		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
Frame-shit	ENST00000582037	ENST00000535916		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
Frame-shit	ENST00000582037	ENST00000286428		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
5CDS-3UTR	ENST00000582037	ENST00000459836		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	NLK	chr17	26370357	+	VBP1	chrX	154464510	+
intron-5UTR	ENST00000477593	ENST00000337554		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-intron	ENST00000477593	ENST00000396265		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-intron	ENST00000477593	ENST00000583777		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-5UTR	ENST00000477593	ENST00000329563		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-5UTR	ENST00000544716	ENST00000337554		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-intron	ENST00000544716	ENST00000396265		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-intron	ENST00000544716	ENST00000583777		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-5UTR	ENST00000544716	ENST00000329563		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-5UTR	ENST00000289153	ENST00000337554		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-intron	ENST00000289153	ENST00000396265		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-intron	ENST00000289153	ENST00000583777		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
intron-5UTR	ENST00000289153	ENST00000329563		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	PIK3CB	chr3	138515305	-	TSPO	chr22	43555216	+
Frame-shit	ENST00000373242	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000373242	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000373242	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000373238	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000373238	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000373238	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000373241	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000373241	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000373241	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000431664	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000431664	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000431664	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
In-frame	ENST00000458634	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
In-frame	ENST00000458634	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000458634	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
intron-3CDS	ENST00000373236	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
intron-3CDS	ENST00000373236	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
intron-intron	ENST00000373236	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
intron-3CDS	ENST00000477464	ENST00000430627		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
intron-3CDS	ENST00000477464	ENST00000447079		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
intron-intron	ENST00000477464	ENST00000559545		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	SAR1A	chr10	71917520	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000581396	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000581396	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000581396	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000581396	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000581396	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000581396	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000379504	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000379504	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000379504	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000379504	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000379504	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000379504	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000318094	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000318094	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000318094	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000318094	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000318094	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000318094	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000395739	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000395739	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000395739	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000395739	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000395739	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000395739	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000535933	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000535933	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000535933	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000535933	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000535933	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000535933	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000540946	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000540946	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000540946	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000540946	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000540946	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000540946	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000542206	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000542206	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000542206	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000542206	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-5UTR	ENST00000542206	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
5CDS-intron	ENST00000542206	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000478943	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000478943	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000478943	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000478943	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-5UTR	ENST00000478943	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000478943	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000577517	ENST00000280772		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000577517	ENST00000373827		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000577517	ENST00000355288		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000577517	ENST00000503366		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-5UTR	ENST00000577517	ENST00000510382		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-intron	ENST00000577517	ENST00000460468		TCGA	LD	BRCA	TCGA-EW-A1OZ-01A	TOM1L2	chr17	17875576	-	ANK3	chr10	62268383	-
intron-3CDS	ENST00000560302	ENST00000519301		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000520407		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000523079		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000338921		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000356819		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000287845		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000341377		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000287842		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000521670		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560302	ENST00000405005		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000560302	ENST00000520502		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000560302	ENST00000539990		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000560302	ENST00000523681		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000519301		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000520407		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000523079		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000338921		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000356819		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000287845		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000341377		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000287842		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000521670		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000394518	ENST00000405005		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000394518	ENST00000520502		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000394518	ENST00000539990		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000394518	ENST00000523681		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000519301		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000520407		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000523079		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000338921		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000356819		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000287845		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000341377		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000287842		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000521670		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
Frame-shit	ENST00000361243	ENST00000405005		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000361243	ENST00000520502		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000361243	ENST00000539990		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000361243	ENST00000523681		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000519301		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000520407		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000523079		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000338921		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000356819		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000287845		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000341377		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000287842		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000521670		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000560579	ENST00000405005		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000560579	ENST00000520502		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000560579	ENST00000539990		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000560579	ENST00000523681		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000519301		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000520407		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000523079		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000338921		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000356819		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000287845		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000341377		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000287842		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000521670		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-3CDS	ENST00000394510	ENST00000405005		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000394510	ENST00000520502		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000394510	ENST00000539990		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
intron-intron	ENST00000394510	ENST00000523681		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	AKAP13	chr15	86087186	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000261837	ENST00000287600		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000261837	ENST00000409772		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000261837	ENST00000477748		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000396335	ENST00000287600		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000396335	ENST00000409772		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000396335	ENST00000477748		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000358784	ENST00000287600		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000358784	ENST00000409772		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000358784	ENST00000477748		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000559348	ENST00000287600		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000559348	ENST00000409772		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000559348	ENST00000477748		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000560116	ENST00000287600		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000560116	ENST00000409772		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
intron-intron	ENST00000560116	ENST00000477748		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	GNB5	chr15	52433337	-	PDE6D	chr2	232603912	-
In-frame	ENST00000178640	ENST00000286744		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000178640	ENST00000567476		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
5CDS-intron	ENST00000178640	ENST00000567716		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
intron-3CDS	ENST00000560591	ENST00000286744		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
intron-3CDS	ENST00000560591	ENST00000567476		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
intron-intron	ENST00000560591	ENST00000567716		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000395476	ENST00000286744		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000395476	ENST00000567476		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
5CDS-intron	ENST00000395476	ENST00000567716		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000354498	ENST00000286744		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000354498	ENST00000567476		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
5CDS-intron	ENST00000354498	ENST00000567716		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000340972	ENST00000286744		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000340972	ENST00000567476		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
5CDS-intron	ENST00000340972	ENST00000567716		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	MAP2K5	chr15	68040939	+	ADAMTSL3	chr15	84373141	+
In-frame	ENST00000306726	ENST00000441037		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	PTPN9	chr15	75801258	-	AGBL1	chr15	87217504	+
In-frame	ENST00000306726	ENST00000421325		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	PTPN9	chr15	75801258	-	AGBL1	chr15	87217504	+
In-frame	ENST00000306726	ENST00000389298		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	PTPN9	chr15	75801258	-	AGBL1	chr15	87217504	+
intron-3CDS	ENST00000564970	ENST00000441037		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	PTPN9	chr15	75801258	-	AGBL1	chr15	87217504	+
intron-3CDS	ENST00000564970	ENST00000421325		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	PTPN9	chr15	75801258	-	AGBL1	chr15	87217504	+
intron-3CDS	ENST00000564970	ENST00000389298		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	PTPN9	chr15	75801258	-	AGBL1	chr15	87217504	+
Frame-shit	ENST00000519560	ENST00000256216		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000519560	ENST00000515320		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000519560	ENST00000510025		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000519560	ENST00000504811		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000519560	ENST00000414835		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000519560	ENST00000513628		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000519560	ENST00000509514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000519560	ENST00000522415		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000332966	ENST00000256216		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000332966	ENST00000515320		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000332966	ENST00000510025		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000332966	ENST00000504811		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000332966	ENST00000414835		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000332966	ENST00000513628		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000332966	ENST00000509514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000332966	ENST00000522415		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000404867	ENST00000256216		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000404867	ENST00000515320		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000404867	ENST00000510025		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000404867	ENST00000504811		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000404867	ENST00000414835		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000404867	ENST00000513628		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000404867	ENST00000509514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000404867	ENST00000522415		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-3CDS	ENST00000521130	ENST00000256216		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000521130	ENST00000515320		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-5UTR	ENST00000521130	ENST00000510025		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-5UTR	ENST00000521130	ENST00000504811		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-5UTR	ENST00000521130	ENST00000414835		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000521130	ENST00000513628		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000521130	ENST00000509514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
intron-intron	ENST00000521130	ENST00000522415		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	SLIT3	chr5	168310270	-	HSD17B4	chr5	118792010	+
5UTR-3CDS	ENST00000308580	ENST00000409514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3CDS	ENST00000308580	ENST00000409098		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3CDS	ENST00000308580	ENST00000409394		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3CDS	ENST00000308580	ENST00000258416		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3CDS	ENST00000308580	ENST00000409495		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3CDS	ENST00000308580	ENST00000409167		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3CDS	ENST00000308580	ENST00000409322		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5UTR-3UTR	ENST00000308580	ENST00000479834		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000409514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000409098		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000409394		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000258416		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000409495		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000409167		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000544199	ENST00000409322		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3UTR	ENST00000544199	ENST00000479834		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000409514		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000409098		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000409394		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000258416		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000409495		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000409167		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3CDS	ENST00000561136	ENST00000409322		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
intron-3UTR	ENST00000561136	ENST00000479834		TCGA	LD	BRCA	TCGA-EW-A1P0-01A	TMOD3	chr15	52122033	+	EIF4E2	chr2	233421126	+
5CDS-intron	ENST00000258761	ENST00000322231		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000339077		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000539124		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000542558		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000409689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000545443		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000479288		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000322275		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000410047		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258761	ENST00000545771		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000322231		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000339077		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000539124		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000542558		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000409689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000545443		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000479288		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000322275		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000410047		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000433922	ENST00000545771		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000322231		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000339077		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000539124		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000542558		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000409689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000545443		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000479288		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000322275		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000410047		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000432311	ENST00000545771		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000322231		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000339077		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000539124		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000542558		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000409689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000545443		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000479288		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000322275		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000410047		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000452975	ENST00000545771		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000322231		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000339077		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000539124		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000542558		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000409689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000545443		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000479288		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000322275		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000410047		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000405202	ENST00000545771		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000322231		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000339077		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000539124		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000542558		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000409689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000545443		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000479288		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000322275		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000410047		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000407633	ENST00000545771		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	BZW2	chr7	16744294	+	KLHL7	chr7	23195610	+
In-frame	ENST00000360876	ENST00000534941		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	EIF3B	chr7	2412430	+	C3orf33	chr3	155485458	-
In-frame	ENST00000360876	ENST00000340171		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	EIF3B	chr7	2412430	+	C3orf33	chr3	155485458	-
In-frame	ENST00000397011	ENST00000534941		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	EIF3B	chr7	2412430	+	C3orf33	chr3	155485458	-
In-frame	ENST00000397011	ENST00000340171		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	EIF3B	chr7	2412430	+	C3orf33	chr3	155485458	-
In-frame	ENST00000409785	ENST00000338368		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	KCMF1	chr2	85255179	+	PRKDC	chr8	48772320	-
In-frame	ENST00000409785	ENST00000314191		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	KCMF1	chr2	85255179	+	PRKDC	chr8	48772320	-
5CDS-5UTR	ENST00000409785	ENST00000523565		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	KCMF1	chr2	85255179	+	PRKDC	chr8	48772320	-
5CDS-intron	ENST00000558518	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558518	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558518	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558518	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558518	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000557933	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000557933	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000557933	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000557933	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000557933	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000455727	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000455727	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000455727	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000455727	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000455727	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000535915	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000535915	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000535915	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000535915	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000535915	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000545707	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000545707	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000545707	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000545707	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000545707	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558013	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558013	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558013	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558013	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
5CDS-intron	ENST00000558013	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000560628	ENST00000536363		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000560628	ENST00000540689		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000560628	ENST00000601134		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000560628	ENST00000601629		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
intron-intron	ENST00000560628	ENST00000292530		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	LDLR	chr19	11231198	+	ZNF333	chr19	14841987	+
Frame-shit	ENST00000402693	ENST00000221114		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	DCTN6	chr8	30032601	+
Frame-shit	ENST00000402693	ENST00000520829		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	DCTN6	chr8	30032601	+
Frame-shit	ENST00000388824	ENST00000221114		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	DCTN6	chr8	30032601	+
Frame-shit	ENST00000388824	ENST00000520829		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	DCTN6	chr8	30032601	+
5CDS-intron	ENST00000402693	ENST00000321250		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000402693	ENST00000518001		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000402693	ENST00000442880		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000402693	ENST00000523116		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000402693	ENST00000518192		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000388824	ENST00000321250		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000388824	ENST00000518001		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000388824	ENST00000442880		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000388824	ENST00000523116		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
5CDS-intron	ENST00000388824	ENST00000518192		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	MEX3D	chr19	1567463	-	LEPROTL1	chr8	30032601	+
intron-intron	ENST00000499676	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000499676	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000499676	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000499676	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000499676	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5CDS-intron	ENST00000489671	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5CDS-intron	ENST00000489671	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5CDS-intron	ENST00000489671	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5CDS-intron	ENST00000489671	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5CDS-5UTR	ENST00000489671	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000486111	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000486111	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000486111	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000486111	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000486111	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000477292	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000477292	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000477292	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000477292	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000477292	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000495310	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000495310	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000495310	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000495310	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000495310	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000467072	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000467072	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000467072	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000467072	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-5UTR	ENST00000467072	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000317104	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000317104	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000317104	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-intron	ENST00000317104	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
5UTR-5UTR	ENST00000317104	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000310282	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000310282	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000310282	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000310282	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000310282	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000479040	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000479040	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000479040	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000479040	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000479040	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000397991	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000397991	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000397991	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000397991	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000397991	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000464782	ENST00000356327		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000464782	ENST00000351298		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000464782	ENST00000342215		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-intron	ENST00000464782	ENST00000340989		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
intron-5UTR	ENST00000464782	ENST00000497307		TCGA	LD	BRCA	TCGA-EW-A1P4-01A	TFDP2	chr3	141811903	-	PLD1	chr3	171507325	-
Frame-shit	ENST00000395996	ENST00000311812		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000395996	ENST00000428383		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000395996	ENST00000519521		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
Frame-shit	ENST00000358544	ENST00000311812		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000358544	ENST00000428383		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000358544	ENST00000519521		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
Frame-shit	ENST00000357162	ENST00000311812		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000357162	ENST00000428383		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000357162	ENST00000519521		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
Frame-shit	ENST00000355155	ENST00000311812		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000355155	ENST00000428383		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
5CDS-intron	ENST00000355155	ENST00000519521		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
intron-3CDS	ENST00000441350	ENST00000311812		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
intron-intron	ENST00000441350	ENST00000428383		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
intron-intron	ENST00000441350	ENST00000519521		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
3UTR-3CDS	ENST00000521932	ENST00000311812		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
3UTR-intron	ENST00000521932	ENST00000428383		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
3UTR-intron	ENST00000521932	ENST00000519521		TCGA	LD	BRCA	TCGA-EW-A1P5-01A	VPS13B	chr8	100182391	+	SNX31	chr8	101648239	-
intron-3CDS	ENST00000442339	ENST00000266659		TCGA	LD	BRCA	TCGA-EW-A1P6-01A	CAPS2	chr12	75784102	-	GLIPR1	chr12	75875614	+
intron-3CDS	ENST00000409004	ENST00000266659		TCGA	LD	BRCA	TCGA-EW-A1P6-01A	CAPS2	chr12	75784102	-	GLIPR1	chr12	75875614	+
intron-3CDS	ENST00000409799	ENST00000266659		TCGA	LD	BRCA	TCGA-EW-A1P6-01A	CAPS2	chr12	75784102	-	GLIPR1	chr12	75875614	+
intron-3CDS	ENST00000409445	ENST00000266659		TCGA	LD	BRCA	TCGA-EW-A1P6-01A	CAPS2	chr12	75784102	-	GLIPR1	chr12	75875614	+
intron-3CDS	ENST00000393284	ENST00000266659		TCGA	LD	BRCA	TCGA-EW-A1P6-01A	CAPS2	chr12	75784102	-	GLIPR1	chr12	75875614	+
In-frame	ENST00000372771	ENST00000372759		TCGA	LD	BRCA	TCGA-EW-A1P7-01A	RLF	chr1	40627308	+	ZMPSTE24	chr1	40756526	+
5CDS-intron	ENST00000372771	ENST00000479131		TCGA	LD	BRCA	TCGA-EW-A1P7-01A	RLF	chr1	40627308	+	ZMPSTE24	chr1	40756526	+
5UTR-intron	ENST00000400128	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
5UTR-intron	ENST00000400131	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
5UTR-intron	ENST00000400135	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
5UTR-intron	ENST00000400127	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
intron-intron	ENST00000338326	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
intron-intron	ENST00000299295	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
intron-intron	ENST00000543733	ENST00000507941		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	CHODL	chr21	19289717	+	ANKRD30BP2	chr21	14424117	+
5CDS-3UTR	ENST00000271732	ENST00000468573		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	GOLPH3L	chr1	150634290	-	CHRM3	chr1	239656009	+
5CDS-intron	ENST00000271732	ENST00000255380		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	GOLPH3L	chr1	150634290	-	CHRM3	chr1	239656009	+
5CDS-3UTR	ENST00000540514	ENST00000468573		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	GOLPH3L	chr1	150634290	-	CHRM3	chr1	239656009	+
5CDS-intron	ENST00000540514	ENST00000255380		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	GOLPH3L	chr1	150634290	-	CHRM3	chr1	239656009	+
intron-3UTR	ENST00000479757	ENST00000468573		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	GOLPH3L	chr1	150634290	-	CHRM3	chr1	239656009	+
intron-intron	ENST00000479757	ENST00000255380		TCGA	LD	BRCA	TCGA-EW-A1P8-01A	GOLPH3L	chr1	150634290	-	CHRM3	chr1	239656009	+
intron-3CDS	ENST00000590602	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000590602	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000590602	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000590602	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000590602	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000590602	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000322933	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000322933	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322933	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322933	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322933	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322933	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000592076	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000592076	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000592076	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000392467	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000392467	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000392467	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000322914	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000322914	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000322914	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000306591	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000306591	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000306591	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000306591	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000306591	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000306591	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000591436	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000591436	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000591436	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000589553	ENST00000403627		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-3CDS	ENST00000589553	ENST00000405159		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589553	ENST00000583178		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589553	ENST00000580032		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589553	ENST00000581110		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
intron-5UTR	ENST00000589553	ENST00000583024		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TMC6	chr17	76124740	-	FAM104A	chr17	71205907	-
3UTR-3UTR	ENST00000452647	ENST00000371497		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TSTD3	chr6	99969023	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000452647	ENST00000603338		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TSTD3	chr6	99969023	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000452647	ENST00000329613		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	TSTD3	chr6	99969023	+	TSHZ2	chr20	52103683	+
5UTR-3CDS	ENST00000396421	ENST00000361337		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	ZNF813	chr19	53971043	+	TOP1	chr20	39741422	+
5UTR-3CDS	ENST00000396403	ENST00000361337		TCGA	LD	BRCA	TCGA-EW-A1PA-01A	ZNF813	chr19	53971043	+	TOP1	chr20	39741422	+
5CDS-intron	ENST00000302538	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
5CDS-intron	ENST00000302538	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
5CDS-intron	ENST00000302538	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000544583	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000544583	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000544583	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000572441	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000572441	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000572441	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000574437	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000574437	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000574437	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000291107	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000291107	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000291107	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000543210	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000543210	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000543210	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000536794	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000536794	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000536794	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000573895	ENST00000600324		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000573895	ENST00000594605		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
intron-intron	ENST00000573895	ENST00000597593		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ABR	chr17	1082961	-	STAP2	chr19	4338941	-
5UTR-3CDS	ENST00000416733	ENST00000373450		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000609637		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000608381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000609767		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000360418		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000608383		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000373450		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000609637		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000608381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000609767		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000360418		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000608383		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381317	ENST00000373450		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381317	ENST00000609637		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381317	ENST00000608381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381317	ENST00000609767		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381317	ENST00000360418		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381317	ENST00000608383		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381333	ENST00000373450		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381333	ENST00000609637		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381333	ENST00000608381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381333	ENST00000609767		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381333	ENST00000360418		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
In-frame	ENST00000381333	ENST00000608383		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000373450		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000609637		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000608381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000609767		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000360418		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000608383		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A1	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000344644		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000373445		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000344644		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000373445		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
In-frame	ENST00000381317	ENST00000344644		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
In-frame	ENST00000381317	ENST00000373445		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
In-frame	ENST00000381333	ENST00000344644		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
In-frame	ENST00000381333	ENST00000373445		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000344644		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000373445		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A10	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000482026		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A3	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000482026		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A3	chr2	234675680	+
In-frame	ENST00000381317	ENST00000482026		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A3	chr2	234675680	+
In-frame	ENST00000381333	ENST00000482026		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A3	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000482026		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A3	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000373409		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A4	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000373409		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A4	chr2	234675680	+
In-frame	ENST00000381317	ENST00000373409		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A4	chr2	234675680	+
In-frame	ENST00000381333	ENST00000373409		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A4	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000373409		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A4	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000373414		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A5	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000373414		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A5	chr2	234675680	+
In-frame	ENST00000381317	ENST00000373414		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A5	chr2	234675680	+
In-frame	ENST00000381333	ENST00000373414		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A5	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000373414		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A5	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000373424		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5UTR-intron	ENST00000416733	ENST00000480628		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5UTR-intron	ENST00000416733	ENST00000305139		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5UTR-intron	ENST00000416733	ENST00000406651		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000373424		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-intron	ENST00000534940	ENST00000480628		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-intron	ENST00000534940	ENST00000305139		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-intron	ENST00000534940	ENST00000406651		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
In-frame	ENST00000381317	ENST00000373424		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000381317	ENST00000480628		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000381317	ENST00000305139		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000381317	ENST00000406651		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
In-frame	ENST00000381333	ENST00000373424		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000381333	ENST00000480628		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000381333	ENST00000305139		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5CDS-intron	ENST00000381333	ENST00000406651		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000373424		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-intron	ENST00000463763	ENST00000480628		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-intron	ENST00000463763	ENST00000305139		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
intron-intron	ENST00000463763	ENST00000406651		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A6	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000373426		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A7	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000373426		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A7	chr2	234675680	+
In-frame	ENST00000381317	ENST00000373426		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A7	chr2	234675680	+
In-frame	ENST00000381333	ENST00000373426		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A7	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000373426		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A7	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000305208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A8	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000305208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A8	chr2	234675680	+
In-frame	ENST00000381317	ENST00000305208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A8	chr2	234675680	+
In-frame	ENST00000381333	ENST00000305208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A8	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000305208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A8	chr2	234675680	+
5UTR-3CDS	ENST00000416733	ENST00000354728		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A9	chr2	234675680	+
intron-3CDS	ENST00000534940	ENST00000354728		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A9	chr2	234675680	+
In-frame	ENST00000381317	ENST00000354728		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A9	chr2	234675680	+
In-frame	ENST00000381333	ENST00000354728		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A9	chr2	234675680	+
intron-3CDS	ENST00000463763	ENST00000354728		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ASMTL	chrY	1521641	-	UGT1A9	chr2	234675680	+
Frame-shit	ENST00000396373	ENST00000542507		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000396373	ENST00000373812		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000396373	ENST00000541996		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000396373	ENST00000478283		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000544715	ENST00000542507		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000544715	ENST00000373812		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000544715	ENST00000541996		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
intron-3UTR	ENST00000544715	ENST00000478283		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ETV6	chr12	11992238	+	YTHDF2	chr1	29095441	+
5CDS-intron	ENST00000518525	ENST00000518527		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000518525	ENST00000377360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000518525	ENST00000328939		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000518525	ENST00000390656		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000518525	ENST00000520740		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000518525	ENST00000434108		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000518525	ENST00000411494		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000518527		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000377360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000328939		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000390656		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265294	ENST00000520740		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265294	ENST00000434108		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265294	ENST00000411494		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000518527		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000377360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000328939		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000390656		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519385	ENST00000520740		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519385	ENST00000434108		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519385	ENST00000411494		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000518527		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000377360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000328939		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000390656		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519598	ENST00000520740		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519598	ENST00000434108		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519598	ENST00000411494		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GABRP	chr5	170224552	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000366730	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000391865	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366726	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000312726	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366728	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366723	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366722	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366721	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366718	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
3UTR-5UTR	ENST00000470040	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000366716	ENST00000360578		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	GUK1	chr1	228333325	+	TPPP	chr5	678179	-
intron-3CDS	ENST00000541592	ENST00000539261		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	HIST4H4	chr12	14923613	-	MGP	chr12	15037179	-
intron-3CDS	ENST00000541592	ENST00000228938		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	HIST4H4	chr12	14923613	-	MGP	chr12	15037179	-
intron-3CDS	ENST00000539745	ENST00000539261		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	HIST4H4	chr12	14923613	-	MGP	chr12	15037179	-
intron-3CDS	ENST00000539745	ENST00000228938		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	HIST4H4	chr12	14923613	-	MGP	chr12	15037179	-
Frame-shit	ENST00000382199	ENST00000475381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000382199	ENST00000273512		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000382199	ENST00000538775		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000382199	ENST00000543711		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000421047	ENST00000475381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000421047	ENST00000273512		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000421047	ENST00000538775		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-intron	ENST00000421047	ENST00000543711		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000457616	ENST00000475381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000457616	ENST00000273512		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000457616	ENST00000538775		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000457616	ENST00000543711		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000346192	ENST00000475381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000346192	ENST00000273512		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000346192	ENST00000538775		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000346192	ENST00000543711		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000494906	ENST00000475381		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000494906	ENST00000273512		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000494906	ENST00000538775		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
intron-intron	ENST00000494906	ENST00000543711		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	IGF2BP2	chr3	185540941	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000262764	ENST00000301633		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
Frame-shit	ENST00000262764	ENST00000350051		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
Frame-shit	ENST00000262764	ENST00000374948		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5CDS-intron	ENST00000262764	ENST00000590449		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5CDS-intron	ENST00000262764	ENST00000592734		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5CDS-3UTR	ENST00000262764	ENST00000589892		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
Frame-shit	ENST00000329897	ENST00000301633		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
Frame-shit	ENST00000329897	ENST00000350051		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
Frame-shit	ENST00000329897	ENST00000374948		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5CDS-intron	ENST00000329897	ENST00000590449		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5CDS-intron	ENST00000329897	ENST00000592734		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5CDS-3UTR	ENST00000329897	ENST00000589892		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
3UTR-3CDS	ENST00000588281	ENST00000301633		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
3UTR-3CDS	ENST00000588281	ENST00000350051		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
3UTR-3CDS	ENST00000588281	ENST00000374948		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
3UTR-intron	ENST00000588281	ENST00000590449		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
3UTR-intron	ENST00000588281	ENST00000592734		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
3UTR-3UTR	ENST00000588281	ENST00000589892		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PGS1	chr17	76395618	+	BIRC5	chr17	76219546	+
5UTR-5UTR	ENST00000275605	ENST00000452681		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000275605	ENST00000537360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000275605	ENST00000297373		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000275605	ENST00000489604		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395471	ENST00000452681		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395471	ENST00000537360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395471	ENST00000297373		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395471	ENST00000489604		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000459834	ENST00000452681		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000459834	ENST00000537360		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000459834	ENST00000297373		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000459834	ENST00000489604		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	PSPH	chr7	56118831	-	PHKG1	chr7	56156668	-
intron-3CDS	ENST00000296043	ENST00000507166		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000296043	ENST00000358575		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000296043	ENST00000337488		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000296043	ENST00000507922		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000296043	ENST00000306932		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3UTR	ENST00000296043	ENST00000510668		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000473602	ENST00000507166		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000473602	ENST00000358575		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000473602	ENST00000337488		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000473602	ENST00000507922		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3CDS	ENST00000473602	ENST00000306932		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-3UTR	ENST00000473602	ENST00000510668		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	SHROOM3	chr4	77507622	+	FIP1L1	chr4	54249940	+
intron-5UTR	ENST00000589046	ENST00000254436		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000589046	ENST00000543625		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000420450	ENST00000254436		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000420450	ENST00000543625		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000526123	ENST00000254436		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
5CDS-5UTR	ENST00000526123	ENST00000543625		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
3UTR-5UTR	ENST00000432005	ENST00000254436		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
3UTR-5UTR	ENST00000432005	ENST00000543625		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000529555	ENST00000254436		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
intron-5UTR	ENST00000529555	ENST00000543625		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF345	chr19	37383887	+	TRIM21	chr11	4411688	-
intron-3CDS	ENST00000466398	ENST00000413748		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000466398	ENST00000300175		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000466398	ENST00000494364		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000466398	ENST00000497208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3UTR	ENST00000466398	ENST00000498069		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
In-frame	ENST00000410066	ENST00000413748		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
In-frame	ENST00000410066	ENST00000300175		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
In-frame	ENST00000410066	ENST00000494364		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
In-frame	ENST00000410066	ENST00000497208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000410066	ENST00000498069		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000336917	ENST00000413748		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000336917	ENST00000300175		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000336917	ENST00000494364		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000336917	ENST00000497208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3UTR	ENST00000336917	ENST00000498069		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409343	ENST00000413748		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409343	ENST00000300175		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409343	ENST00000494364		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409343	ENST00000497208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3UTR	ENST00000409343	ENST00000498069		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409692	ENST00000413748		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409692	ENST00000300175		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409692	ENST00000494364		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000409692	ENST00000497208		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
intron-3UTR	ENST00000409692	ENST00000498069		TCGA	LD	BRCA	TCGA-EW-A1PB-01A	ZNF385B	chr2	180634230	-	SCG5	chr15	32971967	+
In-frame	ENST00000556931	ENST00000535651		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000556931	ENST00000433979		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000556931	ENST00000538779		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000556931	ENST00000266497		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
5CDS-intron	ENST00000556931	ENST00000536967		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000505139	ENST00000535651		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000505139	ENST00000433979		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000505139	ENST00000538779		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000505139	ENST00000266497		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
5CDS-intron	ENST00000505139	ENST00000536967		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000368408	ENST00000535651		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000368408	ENST00000433979		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000368408	ENST00000538779		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000368408	ENST00000266497		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
5CDS-intron	ENST00000368408	ENST00000536967		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000418360	ENST00000535651		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000418360	ENST00000433979		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000418360	ENST00000538779		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
In-frame	ENST00000418360	ENST00000266497		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
5CDS-intron	ENST00000418360	ENST00000536967		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
intron-3CDS	ENST00000498667	ENST00000535651		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
intron-3CDS	ENST00000498667	ENST00000433979		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
intron-3CDS	ENST00000498667	ENST00000538779		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
intron-3CDS	ENST00000498667	ENST00000266497		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
intron-intron	ENST00000498667	ENST00000536967		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	EFNA3	chr1	155057880	+	PIK3C2G	chr12	18499575	+
5CDS-5UTR	ENST00000370056	ENST00000243298		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	VAV3	chr1	108226110	-	RAB9B	chrX	103082008	-
5CDS-5UTR	ENST00000527011	ENST00000243298		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	VAV3	chr1	108226110	-	RAB9B	chrX	103082008	-
intron-5UTR	ENST00000544443	ENST00000243298		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	VAV3	chr1	108226110	-	RAB9B	chrX	103082008	-
5CDS-5UTR	ENST00000415432	ENST00000243298		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	VAV3	chr1	108226110	-	RAB9B	chrX	103082008	-
5UTR-5UTR	ENST00000343258	ENST00000243298		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	VAV3	chr1	108226110	-	RAB9B	chrX	103082008	-
5CDS-5UTR	ENST00000371846	ENST00000243298		TCGA	LD	BRCA	TCGA-EW-A1PC-01B	VAV3	chr1	108226110	-	RAB9B	chrX	103082008	-
5CDS-intron	ENST00000388901	ENST00000560386		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000388901	ENST00000256538		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000388901	ENST00000440392		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000299259	ENST00000560386		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000299259	ENST00000256538		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000299259	ENST00000440392		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000542928	ENST00000560386		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000542928	ENST00000256538		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
5CDS-intron	ENST00000542928	ENST00000440392		TCGA	LD	BRCA	TCGA-EW-A1PD-01A	COPS2	chr15	49447722	-	DPH6	chr15	35747021	-
Frame-shit	ENST00000371440	ENST00000354981		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000371440	ENST00000378003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000371440	ENST00000355755		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000371440	ENST00000408042		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
Frame-shit	ENST00000371435	ENST00000354981		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000371435	ENST00000378003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000371435	ENST00000355755		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000371435	ENST00000408042		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
Frame-shit	ENST00000395961	ENST00000354981		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000395961	ENST00000378003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000395961	ENST00000355755		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000395961	ENST00000408042		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-3CDS	ENST00000434986	ENST00000354981		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000434986	ENST00000378003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000434986	ENST00000355755		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000434986	ENST00000408042		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-3CDS	ENST00000411563	ENST00000354981		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000411563	ENST00000378003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000411563	ENST00000355755		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000411563	ENST00000408042		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BCAS1	chr20	52644931	-	KIF16B	chr20	16509085	-
Frame-shit	ENST00000254977	ENST00000410107		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000254977	ENST00000397423		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000254977	ENST00000495262		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000254977	ENST00000379597		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000254977	ENST00000316170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000254977	ENST00000265012		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
Frame-shit	ENST00000399006	ENST00000410107		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000399006	ENST00000397423		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000399006	ENST00000495262		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000399006	ENST00000379597		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000399006	ENST00000316170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000399006	ENST00000265012		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
Frame-shit	ENST00000405977	ENST00000410107		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000405977	ENST00000397423		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000405977	ENST00000495262		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000405977	ENST00000379597		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000405977	ENST00000316170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000405977	ENST00000265012		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
Frame-shit	ENST00000378226	ENST00000410107		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000378226	ENST00000397423		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000378226	ENST00000495262		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000378226	ENST00000379597		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000378226	ENST00000316170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000378226	ENST00000265012		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
3UTR-3CDS	ENST00000488503	ENST00000410107		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
3UTR-3UTR	ENST00000488503	ENST00000397423		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
3UTR-3UTR	ENST00000488503	ENST00000495262		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
3UTR-3UTR	ENST00000488503	ENST00000379597		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
3UTR-3UTR	ENST00000488503	ENST00000316170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
3UTR-3UTR	ENST00000488503	ENST00000265012		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	BTBD3	chr20	11900484	+	GCNT2	chr6	10621584	+
5UTR-3CDS	ENST00000373233	ENST00000379170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
5UTR-3CDS	ENST00000373233	ENST00000359495		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
5UTR-3CDS	ENST00000309279	ENST00000379170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
5UTR-3CDS	ENST00000309279	ENST00000359495		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
5UTR-3CDS	ENST00000373222	ENST00000379170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
5UTR-3CDS	ENST00000373222	ENST00000359495		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
intron-3CDS	ENST00000480022	ENST00000379170		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
intron-3CDS	ENST00000480022	ENST00000359495		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	CHD6	chr20	40246979	-	MCUR1	chr6	13807276	-
Frame-shit	ENST00000225964	ENST00000360319		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	COL1A1	chr17	48278772	-	FLNA	chrX	153583440	-
Frame-shit	ENST00000225964	ENST00000422373		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	COL1A1	chr17	48278772	-	FLNA	chrX	153583440	-
Frame-shit	ENST00000225964	ENST00000369850		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	COL1A1	chr17	48278772	-	FLNA	chrX	153583440	-
5CDS-5UTR	ENST00000225964	ENST00000369856		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	COL1A1	chr17	48278772	-	FLNA	chrX	153583440	-
5CDS-5UTR	ENST00000225964	ENST00000344736		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	COL1A1	chr17	48278772	-	FLNA	chrX	153583440	-
5CDS-intron	ENST00000225964	ENST00000498491		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	COL1A1	chr17	48278772	-	FLNA	chrX	153583440	-
intron-3CDS	ENST00000379284	ENST00000371440		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000379284	ENST00000371435		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000379284	ENST00000395961		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-intron	ENST00000379284	ENST00000434986		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-5UTR	ENST00000379284	ENST00000411563		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000379287	ENST00000371440		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000379287	ENST00000371435		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000379287	ENST00000395961		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
5CDS-intron	ENST00000379287	ENST00000434986		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
5CDS-5UTR	ENST00000379287	ENST00000411563		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000603223	ENST00000371440		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000603223	ENST00000371435		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000603223	ENST00000395961		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
5CDS-intron	ENST00000603223	ENST00000434986		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
5CDS-5UTR	ENST00000603223	ENST00000411563		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000379278	ENST00000371440		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000379278	ENST00000371435		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000379278	ENST00000395961		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-intron	ENST00000379278	ENST00000434986		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-5UTR	ENST00000379278	ENST00000411563		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	GFOD1	chr6	13486870	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000593786	ENST00000202677		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	NCOA6	chr20	33334611	-	RALGAPA2	chr20	20570009	-
intron-intron	ENST00000593786	ENST00000495793		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	NCOA6	chr20	33334611	-	RALGAPA2	chr20	20570009	-
Frame-shit	ENST00000374796	ENST00000202677		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	NCOA6	chr20	33334611	-	RALGAPA2	chr20	20570009	-
5CDS-intron	ENST00000374796	ENST00000495793		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	NCOA6	chr20	33334611	-	RALGAPA2	chr20	20570009	-
Frame-shit	ENST00000359003	ENST00000202677		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	NCOA6	chr20	33334611	-	RALGAPA2	chr20	20570009	-
5CDS-intron	ENST00000359003	ENST00000495793		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	NCOA6	chr20	33334611	-	RALGAPA2	chr20	20570009	-
5CDS-intron	ENST00000334187	ENST00000593786		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5CDS-5UTR	ENST00000334187	ENST00000374796		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5CDS-5UTR	ENST00000334187	ENST00000359003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5CDS-intron	ENST00000244070	ENST00000593786		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5CDS-5UTR	ENST00000244070	ENST00000374796		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5CDS-5UTR	ENST00000244070	ENST00000359003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5UTR-intron	ENST00000462333	ENST00000593786		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5UTR-5UTR	ENST00000462333	ENST00000374796		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
5UTR-5UTR	ENST00000462333	ENST00000359003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	PPP4R1L	chr20	56847825	-	NCOA6	chr20	33380366	-
Frame-shit	ENST00000011619	ENST00000274695		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000011619	ENST00000378624		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
Frame-shit	ENST00000011619	ENST00000378610		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
5CDS-intron	ENST00000011619	ENST00000476517		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000469916	ENST00000274695		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000469916	ENST00000378624		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000469916	ENST00000378610		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-intron	ENST00000469916	ENST00000476517		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000539980	ENST00000274695		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000539980	ENST00000378624		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-3CDS	ENST00000539980	ENST00000378610		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
intron-intron	ENST00000539980	ENST00000476517		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	CDKAL1	chr6	20955650	+
5CDS-intron	ENST00000011619	ENST00000216968		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	PROCR	chr20	33803696	+
intron-intron	ENST00000469916	ENST00000216968		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	PROCR	chr20	33803696	+
intron-intron	ENST00000539980	ENST00000216968		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	RANBP9	chr6	13697017	-	PROCR	chr20	33803696	+
Frame-shit	ENST00000409003	ENST00000258399		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000409003	ENST00000454775		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000409003	ENST00000415516		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000409003	ENST00000418019		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000409003	ENST00000338465		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
5CDS-intron	ENST00000409003	ENST00000475553		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000314727	ENST00000258399		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000314727	ENST00000454775		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000314727	ENST00000415516		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000314727	ENST00000418019		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000314727	ENST00000338465		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
5CDS-intron	ENST00000314727	ENST00000475553		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
intron-3CDS	ENST00000527515	ENST00000258399		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
intron-3CDS	ENST00000527515	ENST00000454775		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
intron-3CDS	ENST00000527515	ENST00000415516		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
intron-3CDS	ENST00000527515	ENST00000418019		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
intron-3CDS	ENST00000527515	ENST00000338465		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
intron-intron	ENST00000527515	ENST00000475553		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	SAMD12	chr8	119452071	-	USP37	chr2	219411814	-
Frame-shit	ENST00000381482	ENST00000373233		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000381482	ENST00000309279		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000381482	ENST00000373222		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000381482	ENST00000480022		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
Frame-shit	ENST00000246032	ENST00000373233		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000246032	ENST00000309279		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000246032	ENST00000373222		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000246032	ENST00000480022		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
Frame-shit	ENST00000400064	ENST00000373233		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000400064	ENST00000309279		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000400064	ENST00000373222		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
5CDS-intron	ENST00000400064	ENST00000480022		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	STK35	chr20	2084011	+	CHD6	chr20	40113247	-
Frame-shit	ENST00000258399	ENST00000409003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000258399	ENST00000314727		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000258399	ENST00000527515		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000454775	ENST00000409003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000454775	ENST00000314727		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000454775	ENST00000527515		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000415516	ENST00000409003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000415516	ENST00000314727		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000415516	ENST00000527515		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000418019	ENST00000409003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000418019	ENST00000314727		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000418019	ENST00000527515		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000338465	ENST00000409003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000338465	ENST00000314727		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000338465	ENST00000527515		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
intron-3CDS	ENST00000475553	ENST00000409003		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
intron-intron	ENST00000475553	ENST00000314727		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
intron-intron	ENST00000475553	ENST00000527515		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	USP37	chr2	219410944	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000311275	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000311275	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000360911	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000360911	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000458360	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000458360	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000262975	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000262975	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000471951	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000471951	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000352431	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000352431	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000396281	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000396281	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000446994	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000446994	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000536340	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000536340	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000355972	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000355972	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000540497	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000540497	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000461685	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000461685	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000372023	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000372023	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
intron-3CDS	ENST00000468376	ENST00000216044		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
intron-intron	ENST00000468376	ENST00000460605		TCGA	LD	BRCA	TCGA-EW-A1PF-01A	ZMYND8	chr20	45848909	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000263174	ENST00000297641		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
Frame-shit	ENST00000263174	ENST00000380701		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
5CDS-intron	ENST00000263174	ENST00000535968		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
5CDS-intron	ENST00000263174	ENST00000486641		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
Frame-shit	ENST00000605497	ENST00000297641		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
Frame-shit	ENST00000605497	ENST00000380701		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
5CDS-intron	ENST00000605497	ENST00000535968		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
5CDS-intron	ENST00000605497	ENST00000486641		TCGA	LD	BRCA	TCGA-EW-A1PG-01A	PALMD	chr1	100133322	+	CCDC171	chr9	15777598	+
3UTR-3CDS	ENST00000602240	ENST00000339514		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
3UTR-3CDS	ENST00000602240	ENST00000392318		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
3UTR-3CDS	ENST00000602240	ENST00000304164		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
3UTR-3CDS	ENST00000602240	ENST00000392316		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
3UTR-3CDS	ENST00000602240	ENST00000439065		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
3UTR-intron	ENST00000602240	ENST00000496992		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000204005	ENST00000339514		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000204005	ENST00000392318		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000204005	ENST00000304164		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000204005	ENST00000392316		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000204005	ENST00000439065		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
5CDS-intron	ENST00000204005	ENST00000496992		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000545697	ENST00000339514		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000545697	ENST00000392318		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000545697	ENST00000304164		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000545697	ENST00000392316		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000545697	ENST00000439065		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
5CDS-intron	ENST00000545697	ENST00000496992		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000308370	ENST00000339514		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000308370	ENST00000392318		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000308370	ENST00000304164		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000308370	ENST00000392316		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000308370	ENST00000439065		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
5CDS-intron	ENST00000308370	ENST00000496992		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000396819	ENST00000339514		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000396819	ENST00000392318		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000396819	ENST00000304164		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000396819	ENST00000392316		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000396819	ENST00000439065		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
5CDS-intron	ENST00000396819	ENST00000496992		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000243562	ENST00000339514		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000243562	ENST00000392318		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000243562	ENST00000304164		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000243562	ENST00000392316		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
Frame-shit	ENST00000243562	ENST00000439065		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
5CDS-intron	ENST00000243562	ENST00000496992		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	LTBP4	chr19	41120352	+	MYO1B	chr2	192278774	+
3UTR-3CDS	ENST00000347330	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000347330	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000347330	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000347330	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-3CDS	ENST00000413209	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-3CDS	ENST00000413209	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-3CDS	ENST00000413209	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-5UTR	ENST00000413209	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-3CDS	ENST00000338641	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-3CDS	ENST00000338641	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-3CDS	ENST00000338641	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
intron-5UTR	ENST00000338641	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000403435	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000403435	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000403435	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000403435	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361452	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361452	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361452	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000361452	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000403999	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000403999	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000403999	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000403999	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000334961	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000334961	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000334961	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000334961	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000353887	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000353887	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000353887	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000353887	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361166	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361166	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361166	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000361166	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000397789	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000397789	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000397789	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000397789	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361676	ENST00000353891		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361676	ENST00000263200		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-3CDS	ENST00000361676	ENST00000427926		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
3UTR-5UTR	ENST00000361676	ENST00000442042		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	NF2	chr22	30079053	+	CLTCL1	chr22	19171124	-
5UTR-3CDS	ENST00000409419	ENST00000252699		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409419	ENST00000424234		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409419	ENST00000390009		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409419	ENST00000497637		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-3CDS	ENST00000409587	ENST00000252699		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409587	ENST00000424234		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409587	ENST00000390009		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409587	ENST00000497637		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
3UTR-3CDS	ENST00000594085	ENST00000252699		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
3UTR-intron	ENST00000594085	ENST00000424234		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
3UTR-intron	ENST00000594085	ENST00000390009		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
3UTR-intron	ENST00000594085	ENST00000497637		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-3CDS	ENST00000409735	ENST00000252699		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409735	ENST00000424234		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409735	ENST00000390009		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
5UTR-intron	ENST00000409735	ENST00000497637		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-3CDS	ENST00000356508	ENST00000252699		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-intron	ENST00000356508	ENST00000424234		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-intron	ENST00000356508	ENST00000390009		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-intron	ENST00000356508	ENST00000497637		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-3CDS	ENST00000409281	ENST00000252699		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-intron	ENST00000409281	ENST00000424234		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-intron	ENST00000409281	ENST00000390009		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
intron-intron	ENST00000409281	ENST00000497637		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PLD3	chr19	40854675	+	ACTN4	chr19	39198757	+
Frame-shit	ENST00000424085	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000424085	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000424085	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000257075	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000257075	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000257075	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000373747	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000373747	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373747	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000426105	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000426105	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000426105	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000440538	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000440538	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000440538	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373741	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373741	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373741	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000423018	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000423018	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000423018	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373742	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373742	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373742	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000336798		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000339394		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000490546	ENST00000471567		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
3UTR-3CDS	ENST00000283632	ENST00000456996		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
3UTR-3CDS	ENST00000283632	ENST00000409511		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
3UTR-3CDS	ENST00000283632	ENST00000352580		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
3UTR-3CDS	ENST00000283632	ENST00000283635		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
3UTR-3CDS	ENST00000283632	ENST00000538832		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
3UTR-3CDS	ENST00000283632	ENST00000409781		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
intron-3CDS	ENST00000472843	ENST00000456996		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
intron-3CDS	ENST00000472843	ENST00000409511		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
intron-3CDS	ENST00000472843	ENST00000352580		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
intron-3CDS	ENST00000472843	ENST00000283635		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
intron-3CDS	ENST00000472843	ENST00000538832		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
intron-3CDS	ENST00000472843	ENST00000409781		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	RMND5A	chr2	87000558	+	CD8A	chr2	87013094	-
Frame-shit	ENST00000296043	ENST00000253024		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SHROOM3	chr4	77631440	+	TRIM28	chr19	59060229	+
Frame-shit	ENST00000296043	ENST00000341753		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SHROOM3	chr4	77631440	+	TRIM28	chr19	59060229	+
3UTR-3CDS	ENST00000473602	ENST00000253024		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SHROOM3	chr4	77631440	+	TRIM28	chr19	59060229	+
3UTR-3CDS	ENST00000473602	ENST00000341753		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SHROOM3	chr4	77631440	+	TRIM28	chr19	59060229	+
Frame-shit	ENST00000297423	ENST00000523111		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000521346		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000517630		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000520809		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000518074	ENST00000523111		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000521346		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000517630		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000520809		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000541342	ENST00000523111		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000521346		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000517630		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000520809		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
3UTR-3CDS	ENST00000521214	ENST00000523111		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000521346		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000517630		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000520809		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000517693	ENST00000523111		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000517693	ENST00000521346		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000517693	ENST00000517630		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000517693	ENST00000520809		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000518060	ENST00000523111		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000521346		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000517630		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000520809		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	SPIDR	chr8	48353104	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000318289	ENST00000540746		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000318289	ENST00000544216		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000318289	ENST00000433627		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000368023	ENST00000540746		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000368023	ENST00000544216		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000368023	ENST00000433627		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000368024	ENST00000540746		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000368024	ENST00000544216		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000368024	ENST00000433627		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000423014	ENST00000540746		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000423014	ENST00000544216		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
Frame-shit	ENST00000423014	ENST00000433627		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
intron-3CDS	ENST00000466967	ENST00000540746		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
intron-3CDS	ENST00000466967	ENST00000544216		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
intron-3CDS	ENST00000466967	ENST00000433627		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	TSTD1	chr1	161008670	-	LSM14A	chr19	34685383	+
In-frame	ENST00000392149	ENST00000426496		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
In-frame	ENST00000392149	ENST00000392078		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000392149	ENST00000476522		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000392149	ENST00000367742		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000392149	ENST00000338920		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
Frame-shit	ENST00000316950	ENST00000426496		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
Frame-shit	ENST00000316950	ENST00000392078		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000316950	ENST00000476522		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000316950	ENST00000367742		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000316950	ENST00000338920		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-3CDS	ENST00000392150	ENST00000426496		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-3CDS	ENST00000392150	ENST00000392078		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-intron	ENST00000392150	ENST00000476522		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-intron	ENST00000392150	ENST00000367742		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-intron	ENST00000392150	ENST00000338920		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
Frame-shit	ENST00000592490	ENST00000426496		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
Frame-shit	ENST00000592490	ENST00000392078		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000592490	ENST00000476522		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000592490	ENST00000367742		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000592490	ENST00000338920		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
In-frame	ENST00000589833	ENST00000426496		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
In-frame	ENST00000589833	ENST00000392078		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000589833	ENST00000476522		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000589833	ENST00000367742		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5CDS-intron	ENST00000589833	ENST00000338920		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-3CDS	ENST00000591073	ENST00000426496		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-3CDS	ENST00000591073	ENST00000392078		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-intron	ENST00000591073	ENST00000476522		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-intron	ENST00000591073	ENST00000367742		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
5UTR-intron	ENST00000591073	ENST00000338920		TCGA	LD	BRCA	TCGA-EW-A1PH-01A	ZNF569	chr19	37935809	-	PRRC2C	chr1	171544066	+
Frame-shit	ENST00000343823	ENST00000587515		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000343823	ENST00000591291		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000343823	ENST00000347262		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000343823	ENST00000301242		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000343823	ENST00000591585		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
Frame-shit	ENST00000250635	ENST00000587515		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000250635	ENST00000591291		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000250635	ENST00000347262		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000250635	ENST00000301242		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000250635	ENST00000591585		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
Frame-shit	ENST00000545394	ENST00000587515		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000545394	ENST00000591291		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000545394	ENST00000347262		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000545394	ENST00000301242		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000545394	ENST00000591585		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
Frame-shit	ENST00000428278	ENST00000587515		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000428278	ENST00000591291		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000428278	ENST00000347262		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000428278	ENST00000301242		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000428278	ENST00000591585		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
Frame-shit	ENST00000521652	ENST00000587515		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000521652	ENST00000591291		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000521652	ENST00000347262		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000521652	ENST00000301242		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
5CDS-intron	ENST00000521652	ENST00000591585		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
intron-3CDS	ENST00000524263	ENST00000587515		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
intron-intron	ENST00000524263	ENST00000591291		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
intron-intron	ENST00000524263	ENST00000347262		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
intron-intron	ENST00000524263	ENST00000301242		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
intron-intron	ENST00000524263	ENST00000591585		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	ASH2L	chr8	37976881	+	PPP1R14A	chr19	38742086	-
3UTR-intron	ENST00000435070	ENST00000556818		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000435070	ENST00000554015		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000435070	ENST00000394712		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000435070	ENST00000358738		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-intron	ENST00000456847	ENST00000556818		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000456847	ENST00000554015		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000456847	ENST00000394712		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000456847	ENST00000358738		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-intron	ENST00000266679	ENST00000556818		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000266679	ENST00000554015		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000266679	ENST00000394712		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000266679	ENST00000358738		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
intron-intron	ENST00000550987	ENST00000556818		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
intron-5UTR	ENST00000550987	ENST00000554015		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
intron-5UTR	ENST00000550987	ENST00000394712		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
intron-5UTR	ENST00000550987	ENST00000358738		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
5CDS-intron	ENST00000551516	ENST00000556818		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000551516	ENST00000554015		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000551516	ENST00000394712		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000551516	ENST00000358738		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	CPSF6	chr12	69656342	+	ZBTB1	chr14	64988205	+
Frame-shit	ENST00000399332	ENST00000458591		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000399332	ENST00000421551		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000399332	ENST00000544052		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000399332	ENST00000541123		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000399332	ENST00000396629		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
5CDS-intron	ENST00000399332	ENST00000554486		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000553700	ENST00000458591		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000553700	ENST00000421551		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000553700	ENST00000544052		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000553700	ENST00000541123		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
Frame-shit	ENST00000553700	ENST00000396629		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
5CDS-intron	ENST00000553700	ENST00000554486		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
intron-3CDS	ENST00000556474	ENST00000458591		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
intron-3CDS	ENST00000556474	ENST00000421551		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
intron-3CDS	ENST00000556474	ENST00000544052		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
intron-3CDS	ENST00000556474	ENST00000541123		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
intron-3CDS	ENST00000556474	ENST00000396629		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
intron-intron	ENST00000556474	ENST00000554486		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	HECTD1	chr14	31626046	-	SCFD1	chr14	31177196	+
5UTR-3CDS	ENST00000326764	ENST00000391743		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000326764	ENST00000348231		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000326764	ENST00000391742		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000326764	ENST00000434277		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000326764	ENST00000313038		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000326764	ENST00000474878		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-5UTR	ENST00000326764	ENST00000463489		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000376514	ENST00000391743		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000376514	ENST00000348231		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000376514	ENST00000391742		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000376514	ENST00000434277		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000376514	ENST00000313038		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000376514	ENST00000474878		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-5UTR	ENST00000376514	ENST00000463489		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	LENG8	chr19	54960484	+	LAIR1	chr19	54868575	-
5UTR-3CDS	ENST00000474210	ENST00000281437		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
5UTR-5UTR	ENST00000474210	ENST00000526127		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
5UTR-intron	ENST00000474210	ENST00000531946		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
Frame-shit	ENST00000394231	ENST00000281437		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
5CDS-5UTR	ENST00000394231	ENST00000526127		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
5CDS-intron	ENST00000394231	ENST00000531946		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
intron-3CDS	ENST00000577810	ENST00000281437		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
intron-5UTR	ENST00000577810	ENST00000526127		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
intron-intron	ENST00000577810	ENST00000531946		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	MIEN1	chr17	37885938	-	BARX2	chr11	129306646	+
In-frame	ENST00000301761	ENST00000502692		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000301761	ENST00000513398		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000542074	ENST00000502692		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000542074	ENST00000513398		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000537782	ENST00000502692		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000537782	ENST00000513398		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000543265	ENST00000502692		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000543265	ENST00000513398		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000534878	ENST00000502692		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
In-frame	ENST00000534878	ENST00000513398		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	SDHAF2	chr11	61197654	+	ACTN3	chr11	66318710	+
5CDS-5UTR	ENST00000355683	ENST00000518864		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000355683	ENST00000522124		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000355683	ENST00000517473		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000355683	ENST00000276467		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000355683	ENST00000520697		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-5UTR	ENST00000357479	ENST00000518864		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000357479	ENST00000522124		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000357479	ENST00000517473		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000357479	ENST00000276467		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
5CDS-intron	ENST00000357479	ENST00000520697		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
intron-5UTR	ENST00000366206	ENST00000518864		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
intron-intron	ENST00000366206	ENST00000522124		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
intron-intron	ENST00000366206	ENST00000517473		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
intron-intron	ENST00000366206	ENST00000276467		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
intron-intron	ENST00000366206	ENST00000520697		TCGA	LD	BRCA	TCGA-EW-A2FR-01A	STRN3	chr14	31495110	-	SNTG1	chr8	50823452	+
In-frame	ENST00000539787	ENST00000221403		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000539787	ENST00000523250		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000539787	ENST00000522614		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000345358	ENST00000221403		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000345358	ENST00000523250		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000345358	ENST00000522614		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
3UTR-3CDS	ENST00000391871	ENST00000221403		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
3UTR-3CDS	ENST00000391871	ENST00000523250		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
3UTR-3CDS	ENST00000391871	ENST00000522614		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000415969	ENST00000221403		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000415969	ENST00000523250		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000415969	ENST00000522614		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000354470	ENST00000221403		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000354470	ENST00000523250		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000354470	ENST00000522614		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000293288	ENST00000221403		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000293288	ENST00000523250		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
In-frame	ENST00000293288	ENST00000522614		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	BAX	chr19	49459590	+	DHDH	chr19	49438257	+
intron-3CDS	ENST00000607838	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000607838	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000591724	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000591724	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000332065	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000332065	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000589210	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000589210	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000335146	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000335146	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000467929	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000467929	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000405575	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000405575	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000411744	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000411744	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000406660	ENST00000225276		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
intron-intron	ENST00000406660	ENST00000586520		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74079771	-	ST6GALNAC2	chr17	74562353	-
Frame-shit	ENST00000607838	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000607838	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000607838	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
intron-3CDS	ENST00000591724	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
intron-3CDS	ENST00000591724	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
intron-intron	ENST00000591724	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000332065	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000332065	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000332065	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000589210	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000589210	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000589210	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000335146	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000335146	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000335146	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000467929	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000467929	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000467929	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000405575	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000405575	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000405575	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000411744	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
Frame-shit	ENST00000411744	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000411744	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
intron-3CDS	ENST00000406660	ENST00000261497		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
intron-3CDS	ENST00000406660	ENST00000537526		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
intron-intron	ENST00000406660	ENST00000455117		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	EXOC7	chr17	74097352	-	USP22	chr17	20911309	-
5CDS-intron	ENST00000311172	ENST00000520444		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	FCHSD2	chr11	72598515	-	NRG1-IT1	chr8	31996731	+
5CDS-intron	ENST00000409314	ENST00000520444		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	FCHSD2	chr11	72598515	-	NRG1-IT1	chr8	31996731	+
5CDS-intron	ENST00000409418	ENST00000520444		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	FCHSD2	chr11	72598515	-	NRG1-IT1	chr8	31996731	+
5CDS-intron	ENST00000458644	ENST00000520444		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	FCHSD2	chr11	72598515	-	NRG1-IT1	chr8	31996731	+
5CDS-intron	ENST00000409853	ENST00000520444		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	FCHSD2	chr11	72598515	-	NRG1-IT1	chr8	31996731	+
intron-intron	ENST00000409263	ENST00000520444		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	FCHSD2	chr11	72598515	-	NRG1-IT1	chr8	31996731	+
In-frame	ENST00000416651	ENST00000234296		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
5CDS-intron	ENST00000416651	ENST00000467605		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
In-frame	ENST00000409020	ENST00000234296		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
5CDS-intron	ENST00000409020	ENST00000467605		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
In-frame	ENST00000359683	ENST00000234296		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
5CDS-intron	ENST00000359683	ENST00000467605		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
In-frame	ENST00000409357	ENST00000234296		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
5CDS-intron	ENST00000409357	ENST00000467605		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
In-frame	ENST00000409588	ENST00000234296		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
5CDS-intron	ENST00000409588	ENST00000467605		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	NIF3L1	chr2	201758131	+	ORC2	chr2	201778715	-
intron-3CDS	ENST00000449833	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3UTR	ENST00000449833	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3CDS	ENST00000409161	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3UTR	ENST00000409161	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000423696	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000423696	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000338508	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000338508	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3CDS	ENST00000409530	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3UTR	ENST00000409530	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3CDS	ENST00000449116	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3UTR	ENST00000449116	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3CDS	ENST00000357171	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
intron-3UTR	ENST00000357171	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
5UTR-3CDS	ENST00000468619	ENST00000263674		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
5UTR-3UTR	ENST00000468619	ENST00000536170		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SHANK2	chr11	70544793	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000262013	ENST00000336915		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
In-frame	ENST00000262013	ENST00000584924		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000505279	ENST00000336915		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
In-frame	ENST00000505279	ENST00000584924		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000357122	ENST00000336915		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
In-frame	ENST00000357122	ENST00000584924		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000509724	ENST00000336915		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000509724	ENST00000584924		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000510283	ENST00000336915		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000510283	ENST00000584924		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	SPAG9	chr17	49124736	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000581865	ENST00000504681		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
intron-3CDS	ENST00000581865	ENST00000393354		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
intron-3CDS	ENST00000581865	ENST00000300404		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000312655	ENST00000504681		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000312655	ENST00000393354		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000312655	ENST00000300404		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000585166	ENST00000504681		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000585166	ENST00000393354		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
Frame-shit	ENST00000585166	ENST00000300404		TCGA	LD	BRCA	TCGA-EW-A2FS-01A	YPEL2	chr17	57430887	+	B4GALNT2	chr17	47230162	+
intron-3CDS	ENST00000538928	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000538928	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000538928	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000538928	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000538928	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000538928	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000584529	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000584529	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000584529	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000584529	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000584529	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000584529	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000290866	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000290866	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000290866	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000290866	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000290866	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
5CDS-intron	ENST00000290866	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000428043	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000428043	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000428043	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000428043	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000428043	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
5CDS-intron	ENST00000428043	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000490216	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000490216	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000490216	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000490216	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000490216	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000490216	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000577647	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000577647	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000577647	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000577647	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000577647	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000577647	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000290863	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000290863	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000290863	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000290863	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000290863	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000290863	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000421982	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000421982	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000421982	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000421982	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000421982	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000421982	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000413513	ENST00000579585		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000413513	ENST00000584573		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000413513	ENST00000361733		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000413513	ENST00000361357		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-3CDS	ENST00000413513	ENST00000577395		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000413513	ENST00000577784		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ACE	chr17	61561902	+	MAP3K3	chr17	61729917	+
intron-intron	ENST00000263433	ENST00000325421		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	PPP1R12C	chr19	55604206	-	ZNF579	chr19	56088818	-
intron-intron	ENST00000376393	ENST00000325421		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	PPP1R12C	chr19	55604206	-	ZNF579	chr19	56088818	-
intron-intron	ENST00000435544	ENST00000325421		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	PPP1R12C	chr19	55604206	-	ZNF579	chr19	56088818	-
5CDS-5UTR	ENST00000599802	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF586	chr19	58281246	+	ZSCAN4	chr19	58187409	+
5UTR-5UTR	ENST00000391702	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF586	chr19	58281246	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000598885	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF586	chr19	58281246	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000598183	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF586	chr19	58281246	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000396154	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF586	chr19	58281246	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000396150	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF586	chr19	58281246	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000316462	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF587B	chr19	58350517	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000442832	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF587B	chr19	58350517	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000594901	ENST00000318203		TCGA	LD	BRCA	TCGA-EW-A2FV-01A	ZNF587B	chr19	58350517	+	ZSCAN4	chr19	58187409	+
5CDS-5UTR	ENST00000348547	ENST00000473131		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000348547	ENST00000203001		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000348547	ENST00000453074		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000357394	ENST00000473131		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000357394	ENST00000203001		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000357394	ENST00000453074		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000279052	ENST00000473131		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000279052	ENST00000203001		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000279052	ENST00000453074		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000447986	ENST00000473131		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000447986	ENST00000203001		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
5CDS-5UTR	ENST00000447986	ENST00000453074		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
3UTR-5UTR	ENST00000482338	ENST00000473131		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
3UTR-5UTR	ENST00000482338	ENST00000203001		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
3UTR-5UTR	ENST00000482338	ENST00000453074		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	ERGIC3	chr20	34136618	+	TRMT6	chr20	5927179	-
intron-intron	ENST00000281038	ENST00000255175		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000281038	ENST00000342374		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000281038	ENST00000541235		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000281038	ENST00000468234		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000528850	ENST00000255175		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000528850	ENST00000342374		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000528850	ENST00000541235		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
intron-intron	ENST00000528850	ENST00000468234		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	NARS2	chr11	78147571	-	SERINC3	chr20	43150750	-
In-frame	ENST00000371621	ENST00000374078		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000371621	ENST00000374077		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000371621	ENST00000374072		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000371621	ENST00000397416		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
Frame-shit	ENST00000371621	ENST00000336695		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000541713	ENST00000374078		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000541713	ENST00000374077		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000541713	ENST00000374072		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000541713	ENST00000397416		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
Frame-shit	ENST00000541713	ENST00000336695		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	PTPN1	chr20	49191191	+	ROMO1	chr20	34287555	+
In-frame	ENST00000349714	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000349714	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000349714	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000349714	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000359226	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000359226	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000359226	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3UTR	ENST00000359226	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374384	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000374384	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374384	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000374384	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374380	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000374380	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374380	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000374380	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374385	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000374385	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374385	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000374385	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000374377	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000374377	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000374377	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000374377	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000397556	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000397556	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000397556	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000397556	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000407996	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000407996	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000407996	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3UTR	ENST00000407996	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000540457	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000540457	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000540457	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000540457	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000542501	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
Frame-shit	ENST00000542501	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
In-frame	ENST00000542501	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5CDS-3UTR	ENST00000542501	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000397554	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000397554	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3CDS	ENST00000397554	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
intron-3UTR	ENST00000397554	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5UTR-3CDS	ENST00000491125	ENST00000378863		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5UTR-3CDS	ENST00000491125	ENST00000452938		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5UTR-3CDS	ENST00000491125	ENST00000378868		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5UTR-3UTR	ENST00000491125	ENST00000464921		TCGA	LD	BRCA	TCGA-EW-A2FW-01A	UQCC1	chr20	33934967	-	CRLS1	chr20	6012658	+
5UTR-3CDS	ENST00000237654	ENST00000264896		TCGA	LD	BRCA	TCGA-EW-A3E8-01B	CCNI	chr4	77996625	-	SCARB2	chr4	77117017	-
5UTR-3CDS	ENST00000237654	ENST00000452464		TCGA	LD	BRCA	TCGA-EW-A3E8-01B	CCNI	chr4	77996625	-	SCARB2	chr4	77117017	-
In-frame	ENST00000537948	ENST00000264896		TCGA	LD	BRCA	TCGA-EW-A3E8-01B	CCNI	chr4	77996625	-	SCARB2	chr4	77117017	-
In-frame	ENST00000537948	ENST00000452464		TCGA	LD	BRCA	TCGA-EW-A3E8-01B	CCNI	chr4	77996625	-	SCARB2	chr4	77117017	-
intron-3CDS	ENST00000504697	ENST00000264896		TCGA	LD	BRCA	TCGA-EW-A3E8-01B	CCNI	chr4	77996625	-	SCARB2	chr4	77117017	-
intron-3CDS	ENST00000504697	ENST00000452464		TCGA	LD	BRCA	TCGA-EW-A3E8-01B	CCNI	chr4	77996625	-	SCARB2	chr4	77117017	-
intron-3CDS	ENST00000507810	ENST00000302475		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
intron-5UTR	ENST00000507810	ENST00000514701		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
intron-5UTR	ENST00000507810	ENST00000515367		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
intron-5UTR	ENST00000507810	ENST00000408903		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
Frame-shit	ENST00000261486	ENST00000302475		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
5CDS-5UTR	ENST00000261486	ENST00000514701		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
5CDS-5UTR	ENST00000261486	ENST00000515367		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
5CDS-5UTR	ENST00000261486	ENST00000408903		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	EPB41L4A	chr5	111754638	-	MCC	chr5	112458523	-
Frame-shit	ENST00000337827	ENST00000487861		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000337827	ENST00000471583		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000337827	ENST00000487270		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000337827	ENST00000488612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000337827	ENST00000390683		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000337827	ENST00000469165		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000448469	ENST00000487861		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000448469	ENST00000471583		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000448469	ENST00000487270		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000448469	ENST00000488612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000448469	ENST00000390683		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000448469	ENST00000469165		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000553669	ENST00000487861		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000553669	ENST00000471583		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000553669	ENST00000487270		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000553669	ENST00000488612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000553669	ENST00000390683		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000553669	ENST00000469165		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000554858	ENST00000487861		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000554858	ENST00000471583		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000554858	ENST00000487270		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000554858	ENST00000488612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000554858	ENST00000390683		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3UTR	ENST00000554858	ENST00000469165		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	GALNT16	chr14	69814719	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000361198	ENST00000337211		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
intron-3CDS	ENST00000361198	ENST00000369847		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
intron-5UTR	ENST00000361198	ENST00000490296		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
In-frame	ENST00000425280	ENST00000337211		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
In-frame	ENST00000425280	ENST00000369847		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
5CDS-5UTR	ENST00000425280	ENST00000490296		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
5UTR-3CDS	ENST00000490751	ENST00000337211		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
5UTR-3CDS	ENST00000490751	ENST00000369847		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
5UTR-5UTR	ENST00000490751	ENST00000490296		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	LDB1	chr10	103879843	-	PCGF6	chr10	105086389	-
intron-3CDS	ENST00000263946	ENST00000367274		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PKP1	chr1	201297780	+	UBE2T	chr1	202311108	-
intron-3CDS	ENST00000367324	ENST00000367274		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PKP1	chr1	201297780	+	UBE2T	chr1	202311108	-
intron-3CDS	ENST00000352845	ENST00000367274		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PKP1	chr1	201297780	+	UBE2T	chr1	202311108	-
intron-3CDS	ENST00000475988	ENST00000367274		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PKP1	chr1	201297780	+	UBE2T	chr1	202311108	-
Frame-shit	ENST00000541194	ENST00000414778		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000541194	ENST00000373965		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000541194	ENST00000395438		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000409834		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395440		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395446		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395442		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395445		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000373957		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395432		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395433		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000361849		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000395430		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000320301		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000437009		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000373955		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000541194	ENST00000463095		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000537928	ENST00000414778		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000537928	ENST00000373965		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000537928	ENST00000395438		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000409834		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395440		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395446		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395442		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395445		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000373957		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395432		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395433		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000361849		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000395430		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000320301		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000437009		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000373955		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000537928	ENST00000463095		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000378555	ENST00000414778		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000378555	ENST00000373965		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000378555	ENST00000395438		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000409834		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395440		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395446		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395442		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395445		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000373957		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395432		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395433		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000361849		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000395430		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000320301		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000437009		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000373955		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000378555	ENST00000463095		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000322985	ENST00000414778		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000322985	ENST00000373965		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
Frame-shit	ENST00000322985	ENST00000395438		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000409834		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395440		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395446		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395442		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395445		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000373957		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395432		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395433		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000361849		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000395430		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000320301		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000437009		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000373955		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
5CDS-intron	ENST00000322985	ENST00000463095		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000465001	ENST00000414778		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000465001	ENST00000373965		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000465001	ENST00000395438		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000409834		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395440		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395446		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395442		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395445		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000373957		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395432		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395433		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000361849		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000395430		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000320301		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000437009		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000373955		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-intron	ENST00000465001	ENST00000463095		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PODXL	chr7	131241019	-	PCDH15	chr10	56287637	-
intron-3CDS	ENST00000408388	ENST00000586783		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PVT1	chr8	128903244	+	C19orf57	chr19	14004036	-
intron-3CDS	ENST00000408388	ENST00000454313		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PVT1	chr8	128903244	+	C19orf57	chr19	14004036	-
intron-3CDS	ENST00000408388	ENST00000346736		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PVT1	chr8	128903244	+	C19orf57	chr19	14004036	-
intron-3CDS	ENST00000408388	ENST00000591586		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	PVT1	chr8	128903244	+	C19orf57	chr19	14004036	-
5UTR-3CDS	ENST00000382004	ENST00000321612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
5UTR-intron	ENST00000382004	ENST00000460457		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
intron-3CDS	ENST00000358730	ENST00000321612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
intron-intron	ENST00000358730	ENST00000460457		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
5UTR-3CDS	ENST00000302303	ENST00000321612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
5UTR-intron	ENST00000302303	ENST00000460457		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
intron-3CDS	ENST00000381984	ENST00000321612		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
intron-intron	ENST00000381984	ENST00000460457		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RFX3	chr9	3525747	-	GLDC	chr9	6565429	-
In-frame	ENST00000369485	ENST00000369393		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
In-frame	ENST00000369485	ENST00000428876		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
5CDS-intron	ENST00000369485	ENST00000468568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
In-frame	ENST00000265607	ENST00000369393		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
In-frame	ENST00000265607	ENST00000428876		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
5CDS-intron	ENST00000265607	ENST00000468568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
Frame-shit	ENST00000538899	ENST00000369393		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
Frame-shit	ENST00000538899	ENST00000428876		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
5CDS-intron	ENST00000538899	ENST00000468568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
In-frame	ENST00000369475	ENST00000369393		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
In-frame	ENST00000369475	ENST00000428876		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
5CDS-intron	ENST00000369475	ENST00000468568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RNGTT	chr6	89554076	-	MDN1	chr6	90374347	-
In-frame	ENST00000300738	ENST00000300737		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
In-frame	ENST00000300738	ENST00000527651		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
5CDS-intron	ENST00000300738	ENST00000527484		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
5CDS-intron	ENST00000300738	ENST00000533977		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
5UTR-3CDS	ENST00000423050	ENST00000300737		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
5UTR-3CDS	ENST00000423050	ENST00000527651		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
5UTR-intron	ENST00000423050	ENST00000527484		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
5UTR-intron	ENST00000423050	ENST00000533977		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-3CDS	ENST00000534285	ENST00000300737		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-3CDS	ENST00000534285	ENST00000527651		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-intron	ENST00000534285	ENST00000527484		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-intron	ENST00000534285	ENST00000533977		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-3CDS	ENST00000537197	ENST00000300737		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-3CDS	ENST00000537197	ENST00000527651		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-intron	ENST00000537197	ENST00000527484		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-intron	ENST00000537197	ENST00000533977		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-3CDS	ENST00000528470	ENST00000300737		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-3CDS	ENST00000528470	ENST00000527651		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-intron	ENST00000528470	ENST00000527484		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
intron-intron	ENST00000528470	ENST00000533977		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	RRM1	chr11	4116261	+	STIM1	chr11	4107707	+
In-frame	ENST00000598913	ENST00000222345		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
5CDS-intron	ENST00000598913	ENST00000476317		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
In-frame	ENST00000314471	ENST00000222345		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
5CDS-intron	ENST00000314471	ENST00000476317		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
3UTR-3CDS	ENST00000594204	ENST00000222345		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
3UTR-intron	ENST00000594204	ENST00000476317		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
In-frame	ENST00000596368	ENST00000222345		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
5CDS-intron	ENST00000596368	ENST00000476317		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SAMD4B	chr19	39847729	+	SIPA1L3	chr19	38689029	+
5UTR-intron	ENST00000428443	ENST00000466398		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
5UTR-5UTR	ENST00000428443	ENST00000410066		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
5UTR-intron	ENST00000428443	ENST00000336917		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
5UTR-intron	ENST00000428443	ENST00000409343		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
5UTR-intron	ENST00000428443	ENST00000409692		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
intron-intron	ENST00000486468	ENST00000466398		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
intron-5UTR	ENST00000486468	ENST00000410066		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
intron-intron	ENST00000486468	ENST00000336917		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
intron-intron	ENST00000486468	ENST00000409343		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
intron-intron	ENST00000486468	ENST00000409692		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SESTD1	chr2	180129226	-	ZNF385B	chr2	180635399	-
In-frame	ENST00000374723	ENST00000358015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000374723	ENST00000416373		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000374720	ENST00000358015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000374720	ENST00000416373		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000374724	ENST00000358015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000374724	ENST00000416373		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000343170	ENST00000358015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
In-frame	ENST00000343170	ENST00000416373		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000607692	ENST00000358015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000607692	ENST00000416373		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	SLC44A1	chr9	108123611	+	RAD23B	chr9	110068660	+
Frame-shit	ENST00000448507	ENST00000264956		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
Frame-shit	ENST00000448507	ENST00000382674		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
5CDS-intron	ENST00000448507	ENST00000509451		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
5CDS-intron	ENST00000448507	ENST00000515113		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
Frame-shit	ENST00000409757	ENST00000264956		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
Frame-shit	ENST00000409757	ENST00000382674		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
5CDS-intron	ENST00000409757	ENST00000509451		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
5CDS-intron	ENST00000409757	ENST00000515113		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-3CDS	ENST00000410031	ENST00000264956		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-3CDS	ENST00000410031	ENST00000382674		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-intron	ENST00000410031	ENST00000509451		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-intron	ENST00000410031	ENST00000515113		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-3CDS	ENST00000451522	ENST00000264956		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-3CDS	ENST00000451522	ENST00000382674		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-intron	ENST00000451522	ENST00000509451		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-intron	ENST00000451522	ENST00000515113		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-3CDS	ENST00000446947	ENST00000264956		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-3CDS	ENST00000446947	ENST00000382674		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-intron	ENST00000446947	ENST00000509451		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
intron-intron	ENST00000446947	ENST00000515113		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TBC1D14	chr4	6925838	+	EVC	chr4	5803677	+
Frame-shit	ENST00000541412	ENST00000379568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TMEM14C	chr6	10725270	+	PAK1IP1	chr6	10709186	+
Frame-shit	ENST00000229563	ENST00000379568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TMEM14C	chr6	10725270	+	PAK1IP1	chr6	10709186	+
3UTR-3CDS	ENST00000467415	ENST00000379568		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TMEM14C	chr6	10725270	+	PAK1IP1	chr6	10709186	+
Frame-shit	ENST00000297071	ENST00000395891		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
Frame-shit	ENST00000297071	ENST00000453890		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5CDS-intron	ENST00000297071	ENST00000471043		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-3CDS	ENST00000392502	ENST00000395891		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-3CDS	ENST00000392502	ENST00000453890		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-intron	ENST00000392502	ENST00000471043		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-3CDS	ENST00000538367	ENST00000395891		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-3CDS	ENST00000538367	ENST00000453890		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-intron	ENST00000538367	ENST00000471043		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-3CDS	ENST00000474586	ENST00000395891		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-3CDS	ENST00000474586	ENST00000453890		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
5UTR-intron	ENST00000474586	ENST00000471043		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TRA2A	chr7	23561326	-	HECW1	chr7	43351362	+
Frame-shit	ENST00000318289	ENST00000368016		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000318289	ENST00000368013		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000318289	ENST00000368015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000368023	ENST00000368016		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000368023	ENST00000368013		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000368023	ENST00000368015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000368024	ENST00000368016		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000368024	ENST00000368013		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000368024	ENST00000368015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000423014	ENST00000368016		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000423014	ENST00000368013		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000423014	ENST00000368015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
intron-3CDS	ENST00000466967	ENST00000368016		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
intron-3CDS	ENST00000466967	ENST00000368013		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
intron-3CDS	ENST00000466967	ENST00000368015		TCGA	LD	BRCA	TCGA-EW-A3U0-01A	TSTD1	chr1	161008670	-	ARHGAP30	chr1	161022587	-
Frame-shit	ENST00000374660	ENST00000299338		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000374660	ENST00000561064		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000374660	ENST00000558594		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000374660	ENST00000560246		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000374660	ENST00000558862		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-3CDS	ENST00000361713	ENST00000299338		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000361713	ENST00000561064		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000361713	ENST00000558594		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000361713	ENST00000560246		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000361713	ENST00000558862		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
Frame-shit	ENST00000602533	ENST00000299338		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000602533	ENST00000561064		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000602533	ENST00000558594		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000602533	ENST00000560246		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5CDS-intron	ENST00000602533	ENST00000558862		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-3CDS	ENST00000475522	ENST00000299338		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000475522	ENST00000561064		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000475522	ENST00000558594		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000475522	ENST00000560246		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
intron-intron	ENST00000475522	ENST00000558862		TCGA	LD	BRCA	TCGA-EW-A423-01A	ANKRD30A	chr10	37470444	+	FAM227B	chr15	49624046	-
5UTR-intron	ENST00000393799	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
3UTR-intron	ENST00000530427	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000393800	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000534534	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000524845	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
intron-intron	ENST00000265637	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000524904	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000393801	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000265636	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000529710	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5UTR-intron	ENST00000527403	ENST00000526984		TCGA	LD	BRCA	TCGA-EW-A423-01A	PPP6R3	chr11	68287119	+	GUCY2EP	chr11	76424230	-
5CDS-intron	ENST00000299563	ENST00000502597		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-intron	ENST00000299563	ENST00000543050		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000543587		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-intron	ENST00000299563	ENST00000543015		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000545680		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000227618		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000542531		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000535234		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-intron	ENST00000299563	ENST00000545944		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000538393		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000535503		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
5CDS-5UTR	ENST00000299563	ENST00000538919		TCGA	LD	BRCA	TCGA-EW-A423-01A	RNF169	chr11	74500744	+	ANAPC15	chr11	71822542	-
In-frame	ENST00000343605	ENST00000216027		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
In-frame	ENST00000343605	ENST00000398941		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000343605	ENST00000495977		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
In-frame	ENST00000300385	ENST00000216027		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
In-frame	ENST00000300385	ENST00000398941		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000300385	ENST00000495977		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
In-frame	ENST00000406566	ENST00000216027		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
In-frame	ENST00000406566	ENST00000398941		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000406566	ENST00000495977		TCGA	LD	BRCA	TCGA-EW-A423-01A	SLC35E4	chr22	31033056	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000559237	ENST00000348370		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000559237	ENST00000434298		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000559237	ENST00000559209		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000559237	ENST00000557998		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000559237	ENST00000561186		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
5CDS-intron	ENST00000559237	ENST00000560080		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000267807	ENST00000348370		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000267807	ENST00000434298		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000267807	ENST00000559209		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000267807	ENST00000557998		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
Frame-shit	ENST00000267807	ENST00000561186		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
5CDS-intron	ENST00000267807	ENST00000560080		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000559000	ENST00000348370		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000559000	ENST00000434298		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000559000	ENST00000559209		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000559000	ENST00000557998		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000559000	ENST00000561186		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-intron	ENST00000559000	ENST00000560080		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000396245	ENST00000348370		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000396245	ENST00000434298		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000396245	ENST00000559209		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000396245	ENST00000557998		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000396245	ENST00000561186		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-intron	ENST00000396245	ENST00000560080		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000558320	ENST00000348370		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000558320	ENST00000434298		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000558320	ENST00000559209		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000558320	ENST00000557998		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000558320	ENST00000561186		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-intron	ENST00000558320	ENST00000560080		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000561122	ENST00000348370		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000561122	ENST00000434298		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000561122	ENST00000559209		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000561122	ENST00000557998		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-3CDS	ENST00000561122	ENST00000561186		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
intron-intron	ENST00000561122	ENST00000560080		TCGA	LD	BRCA	TCGA-EW-A423-01A	ZNF280D	chr15	56935150	-	RNF111	chr15	59384736	+
5CDS-5UTR	ENST00000334678	ENST00000399289		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-5UTR	ENST00000334678	ENST00000432085		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-5UTR	ENST00000334678	ENST00000337385		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-5UTR	ENST00000334678	ENST00000399286		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-intron	ENST00000334678	ENST00000416357		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-5UTR	ENST00000334678	ENST00000399284		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-intron	ENST00000334678	ENST00000489175		TCGA	LD	BRCA	TCGA-EW-A424-01A	RPS19BP1	chr22	39928400	-	KCNE1	chr21	35831034	-
5CDS-5UTR	ENST00000369747	ENST00000380739		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
5CDS-5UTR	ENST00000369747	ENST00000537185		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
5CDS-5UTR	ENST00000369747	ENST00000476896		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
intron-5UTR	ENST00000503942	ENST00000380739		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
intron-5UTR	ENST00000503942	ENST00000537185		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
intron-5UTR	ENST00000503942	ENST00000476896		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
5CDS-5UTR	ENST00000369745	ENST00000380739		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
5CDS-5UTR	ENST00000369745	ENST00000537185		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
5CDS-5UTR	ENST00000369745	ENST00000476896		TCGA	LD	BRCA	TCGA-EW-A424-01A	UBE3D	chr6	83775361	-	SERPINB1	chr6	2840828	-
In-frame	ENST00000343245	ENST00000424296		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000343245	ENST00000341338		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000343245	ENST00000368948		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000343245	ENST00000285397		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-intron	ENST00000343245	ENST00000355283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
Frame-shit	ENST00000369070	ENST00000424296		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000369070	ENST00000341338		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000369070	ENST00000368948		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000369070	ENST00000285397		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-intron	ENST00000369070	ENST00000355283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
Frame-shit	ENST00000369076	ENST00000424296		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000369076	ENST00000341338		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000369076	ENST00000368948		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000369076	ENST00000285397		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-intron	ENST00000369076	ENST00000355283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
Frame-shit	ENST00000360666	ENST00000424296		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000360666	ENST00000341338		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000360666	ENST00000368948		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000360666	ENST00000285397		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-intron	ENST00000360666	ENST00000355283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
intron-3CDS	ENST00000475645	ENST00000424296		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
intron-5UTR	ENST00000475645	ENST00000341338		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
intron-5UTR	ENST00000475645	ENST00000368948		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
intron-5UTR	ENST00000475645	ENST00000285397		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
intron-intron	ENST00000475645	ENST00000355283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	ATG5	chr6	106696025	-	AK9	chr6	109980616	-
5CDS-5UTR	ENST00000263284	ENST00000391876		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000263284	ENST00000425340		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-intron	ENST00000263284	ENST00000522283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000595358	ENST00000391876		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000595358	ENST00000425340		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-intron	ENST00000595358	ENST00000522283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000536603	ENST00000391876		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000536603	ENST00000425340		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-intron	ENST00000536603	ENST00000522283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000594087	ENST00000391876		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-5UTR	ENST00000594087	ENST00000425340		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
5CDS-intron	ENST00000594087	ENST00000522283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
intron-5UTR	ENST00000601763	ENST00000391876		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
intron-5UTR	ENST00000601763	ENST00000425340		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
intron-intron	ENST00000601763	ENST00000522283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CCDC61	chr19	46511559	+	FUT2	chr19	49206212	+
Frame-shit	ENST00000430627	ENST00000539801		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
Frame-shit	ENST00000430627	ENST00000381652		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
Frame-shit	ENST00000430627	ENST00000544510		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
5CDS-3UTR	ENST00000430627	ENST00000487310		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
Frame-shit	ENST00000447079	ENST00000539801		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
Frame-shit	ENST00000447079	ENST00000381652		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
Frame-shit	ENST00000447079	ENST00000544510		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
5CDS-3UTR	ENST00000447079	ENST00000487310		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
intron-3CDS	ENST00000559545	ENST00000539801		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
intron-3CDS	ENST00000559545	ENST00000381652		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
intron-3CDS	ENST00000559545	ENST00000544510		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
intron-3UTR	ENST00000559545	ENST00000487310		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CDK12	chr17	37628016	+	JAK2	chr9	5126333	+
5UTR-3CDS	ENST00000261951	ENST00000274625		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CNOT6	chr5	179921763	+	FGF18	chr5	170863097	+
5UTR-3CDS	ENST00000393356	ENST00000274625		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CNOT6	chr5	179921763	+	FGF18	chr5	170863097	+
3UTR-3CDS	ENST00000502447	ENST00000274625		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	CNOT6	chr5	179921763	+	FGF18	chr5	170863097	+
Frame-shit	ENST00000535193	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000535193	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-intron	ENST00000535193	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000543771	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000543771	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-intron	ENST00000543771	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000381306	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000381306	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-intron	ENST00000381306	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000381309	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000381309	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-intron	ENST00000381309	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000442236	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000442236	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-intron	ENST00000442236	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
3UTR-3CDS	ENST00000489243	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
3UTR-3CDS	ENST00000489243	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
3UTR-intron	ENST00000489243	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000536108	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
Frame-shit	ENST00000536108	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-intron	ENST00000536108	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
intron-3CDS	ENST00000428870	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
intron-3CDS	ENST00000428870	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
intron-intron	ENST00000428870	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
intron-3CDS	ENST00000401787	ENST00000368972		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
intron-3CDS	ENST00000401787	ENST00000392644		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
intron-intron	ENST00000401787	ENST00000481850		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	KDM4C	chr9	6893232	+	ARMC2	chr6	109220897	+
5CDS-5UTR	ENST00000407008	ENST00000394389		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000407008	ENST00000394386		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000407008	ENST00000487847		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
3UTR-5UTR	ENST00000583517	ENST00000394389		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
3UTR-5UTR	ENST00000583517	ENST00000394386		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
3UTR-5UTR	ENST00000583517	ENST00000487847		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000582037	ENST00000394389		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000582037	ENST00000394386		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000582037	ENST00000487847		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	NLK	chr17	26370357	+	DUSP14	chr17	35870779	+
Frame-shit	ENST00000441310	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000441310	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
intron-3CDS	ENST00000418224	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
intron-3CDS	ENST00000418224	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000409823	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000409823	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
3UTR-3CDS	ENST00000421722	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
3UTR-3CDS	ENST00000421722	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000447232	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000447232	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
intron-3CDS	ENST00000432292	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
intron-3CDS	ENST00000432292	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
In-frame	ENST00000409985	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
In-frame	ENST00000409985	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000374826	ENST00000418842		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
Frame-shit	ENST00000374826	ENST00000375497		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	PMS1	chr2	190670480	+	GCG	chr2	163004024	-
5CDS-5UTR	ENST00000254066	ENST00000243222		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
5CDS-5UTR	ENST00000254066	ENST00000327673		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
5CDS-5UTR	ENST00000394089	ENST00000243222		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
5CDS-5UTR	ENST00000394089	ENST00000327673		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
5CDS-5UTR	ENST00000425707	ENST00000243222		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
5CDS-5UTR	ENST00000425707	ENST00000327673		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
intron-5UTR	ENST00000394086	ENST00000243222		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
intron-5UTR	ENST00000394086	ENST00000327673		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
intron-5UTR	ENST00000394081	ENST00000243222		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
intron-5UTR	ENST00000394081	ENST00000327673		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
intron-5UTR	ENST00000420042	ENST00000243222		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
intron-5UTR	ENST00000420042	ENST00000327673		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	COL10A1	chr6	116446670	-
5CDS-3UTR	ENST00000254066	ENST00000420283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	TSPYL4	chr6	116571581	-
5CDS-3UTR	ENST00000394089	ENST00000420283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	TSPYL4	chr6	116571581	-
5CDS-3UTR	ENST00000425707	ENST00000420283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	TSPYL4	chr6	116571581	-
intron-3UTR	ENST00000394086	ENST00000420283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	TSPYL4	chr6	116571581	-
intron-3UTR	ENST00000394081	ENST00000420283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	TSPYL4	chr6	116571581	-
intron-3UTR	ENST00000420042	ENST00000420283		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	RARA	chr17	38487648	+	TSPYL4	chr6	116571581	-
5UTR-intron	ENST00000293328	ENST00000541920		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	STAT5B	chr17	40428266	-	ACSF2	chr17	48538038	+
5UTR-intron	ENST00000293328	ENST00000300441		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	STAT5B	chr17	40428266	-	ACSF2	chr17	48538038	+
5UTR-intron	ENST00000293328	ENST00000504392		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	STAT5B	chr17	40428266	-	ACSF2	chr17	48538038	+
5UTR-intron	ENST00000293328	ENST00000427954		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	STAT5B	chr17	40428266	-	ACSF2	chr17	48538038	+
5UTR-intron	ENST00000293328	ENST00000502667		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	STAT5B	chr17	40428266	-	ACSF2	chr17	48538038	+
5UTR-intron	ENST00000293328	ENST00000506085		TCGA	LD	BRCA	TCGA-EW-A6S9-01A	STAT5B	chr17	40428266	-	ACSF2	chr17	48538038	+
5UTR-intron	ENST00000470450	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5UTR-intron	ENST00000470450	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5UTR-3UTR	ENST00000470450	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-intron	ENST00000286788	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-intron	ENST00000286788	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-3UTR	ENST00000286788	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-intron	ENST00000542732	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-intron	ENST00000542732	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-3UTR	ENST00000542732	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-intron	ENST00000540844	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-intron	ENST00000540844	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
5CDS-3UTR	ENST00000540844	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CCT8	chr21	30439879	-	ARHGEF25	chr12	58013092	+
intron-3CDS	ENST00000483017	ENST00000373710		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483017	ENST00000536859		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483017	ENST00000373709		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000483017	ENST00000536384		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000483017	ENST00000491976		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
Frame-shit	ENST00000329146	ENST00000373710		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
Frame-shit	ENST00000329146	ENST00000536859		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
Frame-shit	ENST00000329146	ENST00000373709		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
Frame-shit	ENST00000329146	ENST00000536384		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000329146	ENST00000491976		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000548989	ENST00000373710		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000548989	ENST00000536859		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000548989	ENST00000373709		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000548989	ENST00000536384		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000548989	ENST00000491976		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	CRIP2	chr14	105941242	+	SERINC2	chr1	31905814	+
In-frame	ENST00000304733	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000304733	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
5CDS-3UTR	ENST00000304733	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000002501	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000002501	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
5CDS-3UTR	ENST00000002501	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000392973	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000392973	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
5CDS-3UTR	ENST00000392973	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000568838	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
In-frame	ENST00000568838	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
5CDS-3UTR	ENST00000568838	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	DBNDD1	chr16	90075192	-	CRIP2	chr14	105944603	+
Frame-shit	ENST00000361757	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
Frame-shit	ENST00000361757	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
5CDS-3UTR	ENST00000361757	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
Frame-shit	ENST00000587024	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
Frame-shit	ENST00000587024	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
5CDS-3UTR	ENST00000587024	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
intron-3CDS	ENST00000438103	ENST00000483017		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
intron-3CDS	ENST00000438103	ENST00000329146		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
intron-3UTR	ENST00000438103	ENST00000548989		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SBNO2	chr19	1149368	-	CRIP2	chr14	105944603	+
Frame-shit	ENST00000274008	ENST00000394980		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
Frame-shit	ENST00000274008	ENST00000264790		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
Frame-shit	ENST00000274008	ENST00000394981		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
Frame-shit	ENST00000274008	ENST00000508372		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000394980		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000264790		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000394981		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
3UTR-3CDS	ENST00000422835	ENST00000508372		TCGA	LD	BRCA	TCGA-EW-A6SA-01A	SPATA5	chr4	123949550	+	MMRN1	chr4	90872756	+
In-frame	ENST00000401084	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000401084	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000401084	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000401084	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000401084	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
In-frame	ENST00000264203	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264203	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264203	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264203	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264203	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
In-frame	ENST00000375142	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375142	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375142	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375142	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375142	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
In-frame	ENST00000433834	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000433834	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000433834	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000433834	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000433834	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
In-frame	ENST00000264202	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264202	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264202	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264202	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000264202	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
intron-3CDS	ENST00000482808	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
intron-intron	ENST00000482808	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
intron-intron	ENST00000482808	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
intron-intron	ENST00000482808	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
intron-intron	ENST00000482808	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
In-frame	ENST00000375144	ENST00000477853		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375144	ENST00000480380		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375144	ENST00000375199		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375144	ENST00000375208		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5CDS-intron	ENST00000375144	ENST00000356068		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	CAPZB	chr1	19683129	-	EMC1	chr1	19553944	-
5UTR-3CDS	ENST00000418115	ENST00000397537		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	RHOA	chr3	49449253	-	SMCO1	chr3	196236540	-
5UTR-3CDS	ENST00000454011	ENST00000397537		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	RHOA	chr3	49449253	-	SMCO1	chr3	196236540	-
5UTR-3CDS	ENST00000422781	ENST00000397537		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	RHOA	chr3	49449253	-	SMCO1	chr3	196236540	-
intron-3CDS	ENST00000265538	ENST00000397537		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	RHOA	chr3	49449253	-	SMCO1	chr3	196236540	-
5CDS-intron	ENST00000395715	ENST00000520643		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000395715	ENST00000251809		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000395715	ENST00000520508		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000395715	ENST00000388798		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000395715	ENST00000523302		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000220888	ENST00000520643		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000220888	ENST00000251809		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000220888	ENST00000520508		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000220888	ENST00000388798		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000220888	ENST00000523302		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519076	ENST00000520643		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519076	ENST00000251809		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519076	ENST00000520508		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519076	ENST00000388798		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519076	ENST00000523302		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000520276	ENST00000520643		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000520276	ENST00000251809		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000520276	ENST00000520508		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000520276	ENST00000388798		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000520276	ENST00000523302		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519674	ENST00000520643		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519674	ENST00000251809		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519674	ENST00000520508		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519674	ENST00000388798		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5CDS-intron	ENST00000519674	ENST00000523302		TCGA	LD	BRCA	TCGA-EW-A6SB-01A	TRPS1	chr8	116599228	-	SPAG1	chr8	101252631	+
5UTR-5UTR	ENST00000258947	ENST00000301459		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-intron	ENST00000258947	ENST00000473926		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-5UTR	ENST00000509507	ENST00000301459		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-intron	ENST00000509507	ENST00000473926		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-5UTR	ENST00000448105	ENST00000301459		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-intron	ENST00000448105	ENST00000473926		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-5UTR	ENST00000416445	ENST00000301459		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-intron	ENST00000416445	ENST00000473926		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-5UTR	ENST00000508679	ENST00000301459		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
5UTR-intron	ENST00000508679	ENST00000473926		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
intron-5UTR	ENST00000510997	ENST00000301459		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
intron-intron	ENST00000510997	ENST00000473926		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	CALCOCO2	chr17	46908440	+	RCOR2	chr11	63684033	-
In-frame	ENST00000398645	ENST00000376217		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
In-frame	ENST00000398645	ENST00000315938		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000398645	ENST00000527489		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
In-frame	ENST00000529006	ENST00000376217		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
In-frame	ENST00000529006	ENST00000315938		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000529006	ENST00000527489		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
3UTR-3CDS	ENST00000526258	ENST00000376217		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
3UTR-3CDS	ENST00000526258	ENST00000315938		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
3UTR-5UTR	ENST00000526258	ENST00000527489		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000308783	ENST00000376217		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000308783	ENST00000315938		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000308783	ENST00000527489		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000530342	ENST00000376217		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000530342	ENST00000315938		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000530342	ENST00000527489		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	KDM2A	chr11	66983420	+	GDPD4	chr11	76998465	-
In-frame	ENST00000261407	ENST00000205890		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5CDS-intron	ENST00000261407	ENST00000412324		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5CDS-intron	ENST00000261407	ENST00000418233		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5CDS-intron	ENST00000261407	ENST00000585180		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5CDS-intron	ENST00000261407	ENST00000451725		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5UTR-3CDS	ENST00000535021	ENST00000205890		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5UTR-intron	ENST00000535021	ENST00000412324		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5UTR-intron	ENST00000535021	ENST00000418233		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5UTR-intron	ENST00000535021	ENST00000585180		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5UTR-intron	ENST00000535021	ENST00000451725		TCGA	LD	BRCA	TCGA-EW-A6SC-01A	LPCAT3	chr12	7090166	-	MYO15A	chr17	18039025	+
5CDS-intron	ENST00000535741	ENST00000509702		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000535741	ENST00000264867		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000535741	ENST00000507380		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000510413	ENST00000509702		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000510413	ENST00000264867		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000510413	ENST00000507380		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
intron-intron	ENST00000503716	ENST00000509702		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
intron-intron	ENST00000503716	ENST00000264867		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
intron-intron	ENST00000503716	ENST00000507380		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000357115	ENST00000509702		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000357115	ENST00000264867		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000357115	ENST00000507380		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000507224	ENST00000509702		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000507224	ENST00000264867		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000507224	ENST00000507380		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	LRBA	chr4	151935579	-	PPARGC1A	chr4	23886554	-
Frame-shit	ENST00000416426	ENST00000251241		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000416426	ENST00000451169		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000416426	ENST00000425628		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
Frame-shit	ENST00000284073	ENST00000251241		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000284073	ENST00000451169		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000284073	ENST00000425628		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
Frame-shit	ENST00000322684	ENST00000251241		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000322684	ENST00000451169		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000322684	ENST00000425628		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
Frame-shit	ENST00000442934	ENST00000251241		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000442934	ENST00000451169		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000442934	ENST00000425628		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
Frame-shit	ENST00000579180	ENST00000251241		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000579180	ENST00000451169		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
5CDS-5UTR	ENST00000579180	ENST00000425628		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
intron-3CDS	ENST00000579505	ENST00000251241		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
intron-5UTR	ENST00000579505	ENST00000451169		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
intron-5UTR	ENST00000579505	ENST00000425628		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	MSI2	chr17	55478832	+	DHX40	chr17	57643988	+
Frame-shit	ENST00000580974	ENST00000333942		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000580974	ENST00000358365		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000580974	ENST00000583994		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000580974	ENST00000545287		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000580974	ENST00000354266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000580974	ENST00000394692		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000580974	ENST00000581094		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000580974	ENST00000580976		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000299954	ENST00000333942		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000299954	ENST00000358365		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000299954	ENST00000583994		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000299954	ENST00000545287		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000299954	ENST00000354266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000299954	ENST00000394692		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000299954	ENST00000581094		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000299954	ENST00000580976		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000335257	ENST00000333942		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000335257	ENST00000358365		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000335257	ENST00000583994		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000335257	ENST00000545287		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000335257	ENST00000354266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000335257	ENST00000394692		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000335257	ENST00000581094		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000335257	ENST00000580976		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000581322	ENST00000333942		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000581322	ENST00000358365		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000581322	ENST00000583994		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000581322	ENST00000545287		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000581322	ENST00000354266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000581322	ENST00000394692		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000581322	ENST00000581094		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000581322	ENST00000580976		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PITPNC1	chr17	65374318	+	RHOT1	chr17	30498062	+
In-frame	ENST00000340811	ENST00000452533		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000340811	ENST00000553257		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000340811	ENST00000549701		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000340811	ENST00000358214		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000340811	ENST00000548671		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000340811	ENST00000266481		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000340811	ENST00000547312		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000340811	ENST00000414834		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000340811	ENST00000381000		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000070846	ENST00000452533		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000070846	ENST00000553257		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000070846	ENST00000549701		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000070846	ENST00000358214		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000070846	ENST00000548671		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000070846	ENST00000266481		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000070846	ENST00000547312		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000070846	ENST00000414834		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
5CDS-intron	ENST00000070846	ENST00000381000		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-3CDS	ENST00000546741	ENST00000452533		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-3CDS	ENST00000546741	ENST00000553257		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-3CDS	ENST00000546741	ENST00000549701		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-3CDS	ENST00000546741	ENST00000358214		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-intron	ENST00000546741	ENST00000548671		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-intron	ENST00000546741	ENST00000266481		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-intron	ENST00000546741	ENST00000547312		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-intron	ENST00000546741	ENST00000414834		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
intron-intron	ENST00000546741	ENST00000381000		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	PKP2	chr12	32993962	-	DNM1L	chr12	32895523	+
In-frame	ENST00000368802	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
In-frame	ENST00000368802	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
5CDS-intron	ENST00000368802	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
Frame-shit	ENST00000368805	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
Frame-shit	ENST00000368805	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
5CDS-intron	ENST00000368805	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
5UTR-3CDS	ENST00000435970	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
5UTR-3CDS	ENST00000435970	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
5UTR-intron	ENST00000435970	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
Frame-shit	ENST00000358835	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
Frame-shit	ENST00000358835	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
5CDS-intron	ENST00000358835	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
intron-3CDS	ENST00000462119	ENST00000333972		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
intron-3CDS	ENST00000462119	ENST00000286494		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
intron-intron	ENST00000462119	ENST00000477314		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	REV3L	chr6	111803953	-	ARHGEF25	chr12	58008472	+
Frame-shit	ENST00000237536	ENST00000373664		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000237536	ENST00000344359		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000237536	ENST00000598590		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
Frame-shit	ENST00000279034	ENST00000373664		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000279034	ENST00000344359		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000279034	ENST00000598590		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
Frame-shit	ENST00000456801	ENST00000373664		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000456801	ENST00000344359		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000456801	ENST00000598590		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
Frame-shit	ENST00000357779	ENST00000373664		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000357779	ENST00000344359		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000357779	ENST00000598590		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SOGA1	chr20	35431259	-	RBL1	chr20	35627332	-
5CDS-intron	ENST00000373825	ENST00000528190		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000393389		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000528722		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000260047		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000526731		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000531895		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000393392		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5CDS-intron	ENST00000373825	ENST00000533342		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000528190		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000393389		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000528722		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000260047		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000526731		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000531895		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000393392		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000423325	ENST00000533342		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000528190		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000393389		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000528722		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000260047		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000526731		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000531895		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000393392		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
5UTR-intron	ENST00000373822	ENST00000533342		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000528190		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000393389		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000528722		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000260047		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000526731		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000531895		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000393392		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
intron-intron	ENST00000373821	ENST00000533342		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	SRPK1	chr6	35888245	-	ANKRD42	chr11	82938789	+
In-frame	ENST00000379542	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379542	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379542	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379542	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379542	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
5CDS-5UTR	ENST00000379542	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-3CDS	ENST00000491103	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-3CDS	ENST00000491103	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-3CDS	ENST00000491103	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-3CDS	ENST00000491103	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-3CDS	ENST00000491103	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-5UTR	ENST00000491103	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000461342	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000461342	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000461342	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000461342	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000461342	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
5CDS-5UTR	ENST00000461342	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000475942	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000475942	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000475942	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000475942	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000475942	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
5CDS-5UTR	ENST00000475942	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379530	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379530	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379530	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379530	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000379530	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
5CDS-5UTR	ENST00000379530	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
intron-3CDS	ENST00000473276	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
intron-3CDS	ENST00000473276	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
intron-3CDS	ENST00000473276	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
intron-3CDS	ENST00000473276	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
intron-3CDS	ENST00000473276	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
intron-5UTR	ENST00000473276	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000481240	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000481240	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000481240	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000481240	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000481240	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
5CDS-5UTR	ENST00000481240	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000467317	ENST00000379613		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000467317	ENST00000379604		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000467317	ENST00000319516		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000467317	ENST00000379608		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
In-frame	ENST00000467317	ENST00000482890		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
5CDS-5UTR	ENST00000467317	ENST00000497266		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	TMEM14B	chr6	10749931	+	TFAP2A	chr6	10400822	-
3UTR-3CDS	ENST00000494757	ENST00000376741		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	WIPF2	chr17	38375744	+	SP2	chr17	46000328	+
5UTR-3CDS	ENST00000323571	ENST00000376741		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	WIPF2	chr17	38375744	+	SP2	chr17	46000328	+
5UTR-3CDS	ENST00000585043	ENST00000376741		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	WIPF2	chr17	38375744	+	SP2	chr17	46000328	+
5UTR-3CDS	ENST00000394103	ENST00000376741		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	WIPF2	chr17	38375744	+	SP2	chr17	46000328	+
5UTR-3CDS	ENST00000536600	ENST00000376741		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	WIPF2	chr17	38375744	+	SP2	chr17	46000328	+
intron-3CDS	ENST00000583130	ENST00000376741		TCGA	LD	BRCA	TCGA-EW-A6SD-01A	WIPF2	chr17	38375744	+	SP2	chr17	46000328	+
Frame-shit	ENST00000257832	ENST00000533608		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000257832	ENST00000358681		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000257832	ENST00000395673		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000257832	ENST00000343631		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000257832	ENST00000529186		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
Frame-shit	ENST00000312319	ENST00000533608		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000312319	ENST00000358681		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000312319	ENST00000395673		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000312319	ENST00000343631		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
5CDS-intron	ENST00000312319	ENST00000529186		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-3CDS	ENST00000429939	ENST00000533608		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000429939	ENST00000358681		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000429939	ENST00000395673		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000429939	ENST00000343631		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000429939	ENST00000529186		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-3CDS	ENST00000528709	ENST00000533608		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000528709	ENST00000358681		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000528709	ENST00000395673		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000528709	ENST00000343631		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000528709	ENST00000529186		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-3CDS	ENST00000532417	ENST00000533608		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000532417	ENST00000358681		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000532417	ENST00000395673		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000532417	ENST00000343631		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
intron-intron	ENST00000532417	ENST00000529186		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	ELF5	chr11	34515026	-	EXT2	chr11	44193161	+
Frame-shit	ENST00000343289	ENST00000329446		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124459183	-
In-frame	ENST00000404739	ENST00000329446		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124459183	-
intron-3CDS	ENST00000369857	ENST00000329446		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124459183	-
intron-3CDS	ENST00000423468	ENST00000329446		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124459183	-
Frame-shit	ENST00000470299	ENST00000329446		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	NT5C2	chr10	104934615	-	C10orf120	chr10	124459183	-
Frame-shit	ENST00000448838	ENST00000257832		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
Frame-shit	ENST00000448838	ENST00000312319		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
5CDS-intron	ENST00000448838	ENST00000429939		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
5CDS-intron	ENST00000448838	ENST00000528709		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
5CDS-intron	ENST00000448838	ENST00000532417		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
Frame-shit	ENST00000227868	ENST00000257832		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
Frame-shit	ENST00000227868	ENST00000312319		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
5CDS-intron	ENST00000227868	ENST00000429939		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
5CDS-intron	ENST00000227868	ENST00000528709		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
5CDS-intron	ENST00000227868	ENST00000532417		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-3CDS	ENST00000430469	ENST00000257832		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-3CDS	ENST00000430469	ENST00000312319		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-intron	ENST00000430469	ENST00000429939		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-intron	ENST00000430469	ENST00000528709		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-intron	ENST00000430469	ENST00000532417		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-3CDS	ENST00000477173	ENST00000257832		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-3CDS	ENST00000477173	ENST00000312319		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-intron	ENST00000477173	ENST00000429939		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-intron	ENST00000477173	ENST00000528709		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
intron-intron	ENST00000477173	ENST00000532417		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDHX	chr11	34982065	+	ELF5	chr11	34515259	-
In-frame	ENST00000329399	ENST00000371227		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000371249		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000306402		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000353505		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000371246		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000347291		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000393949		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000371247		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000607232		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000371245		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000361941		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000277982		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000354106		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000371239		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
In-frame	ENST00000329399	ENST00000371241		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5CDS-5UTR	ENST00000329399	ENST00000474353		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371227		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371249		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000306402		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000353505		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371246		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000347291		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000393949		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371247		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000607232		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371245		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000361941		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000277982		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000354106		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371239		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-3CDS	ENST00000477757	ENST00000371241		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5UTR-5UTR	ENST00000477757	ENST00000474353		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	PDLIM1	chr10	97050577	-	SORBS1	chr10	97170534	-
5CDS-5UTR	ENST00000424789	ENST00000341217		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000581407		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000582266		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000452648		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000582059		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000583953		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000577682		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000583522		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000424789	ENST00000581381		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000341217		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000581407		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000582266		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000452648		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000582059		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000583953		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000577682		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000583522		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389520	ENST00000581381		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TANC2	chr17	61151375	+	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000537855	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000537855	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000537855	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
5CDS-5UTR	ENST00000379096	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
5CDS-5UTR	ENST00000379096	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
5CDS-intron	ENST00000379096	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
5CDS-5UTR	ENST00000518937	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
5CDS-5UTR	ENST00000518937	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
5CDS-intron	ENST00000518937	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000519303	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000519303	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000519303	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000517427	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000517427	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000517427	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000520527	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000520527	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000520527	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000448733	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000448733	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000448733	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000379097	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000379097	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000379097	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000523395	ENST00000520052		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-5UTR	ENST00000523395	ENST00000520734		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-intron	ENST00000523395	ENST00000518386		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	TPD52	chr8	81083660	-	ANGPT1	chr8	108334356	-
intron-3CDS	ENST00000294119	ENST00000346672		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000294119	ENST00000360962		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000294119	ENST00000527634		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000294119	ENST00000540737		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000294119	ENST00000532565		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000294119	ENST00000525449		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-intron	ENST00000294119	ENST00000527368		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000301935	ENST00000346672		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000301935	ENST00000360962		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000301935	ENST00000527634		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000301935	ENST00000540737		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000301935	ENST00000532565		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000301935	ENST00000525449		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000301935	ENST00000527368		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000533000	ENST00000346672		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000533000	ENST00000360962		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000533000	ENST00000527634		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000533000	ENST00000540737		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000533000	ENST00000532565		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000533000	ENST00000525449		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-intron	ENST00000533000	ENST00000527368		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000529640	ENST00000346672		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000529640	ENST00000360962		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000529640	ENST00000527634		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000529640	ENST00000540737		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000529640	ENST00000532565		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
In-frame	ENST00000529640	ENST00000525449		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000529640	ENST00000527368		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524762	ENST00000346672		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524762	ENST00000360962		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524762	ENST00000527634		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524762	ENST00000540737		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524762	ENST00000532565		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524762	ENST00000525449		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
intron-intron	ENST00000524762	ENST00000527368		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	UBXN1	chr11	62444285	-	C11orf80	chr11	66583524	+
3UTR-3CDS	ENST00000494911	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000494911	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000494911	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000494911	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-intron	ENST00000494911	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-3CDS	ENST00000395900	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000395900	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000395900	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000395900	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-intron	ENST00000395900	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-3CDS	ENST00000459866	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000459866	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000459866	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000459866	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-intron	ENST00000459866	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-3CDS	ENST00000525436	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000525436	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000525436	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-5UTR	ENST00000525436	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
3UTR-intron	ENST00000525436	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000478367	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000478367	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000478367	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000478367	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-intron	ENST00000478367	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000426618	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000426618	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000426618	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000426618	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-intron	ENST00000426618	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000442957	ENST00000278379		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000442957	ENST00000395750		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000442957	ENST00000395753		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000442957	ENST00000606205		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
intron-intron	ENST00000442957	ENST00000479543		TCGA	LD	BRCA	TCGA-GI-A2C8-01A	WT1-AS	chr11	32457392	+	SLC1A2	chr11	35339063	-
5UTR-3CDS	ENST00000346693	ENST00000276211		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5UTR-3CDS	ENST00000346693	ENST00000370922		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5UTR-intron	ENST00000346693	ENST00000370921		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
Frame-shit	ENST00000370377	ENST00000276211		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
In-frame	ENST00000370377	ENST00000370922		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5CDS-intron	ENST00000370377	ENST00000370921		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
Frame-shit	ENST00000355149	ENST00000276211		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
In-frame	ENST00000355149	ENST00000370922		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5CDS-intron	ENST00000355149	ENST00000370921		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
Frame-shit	ENST00000437787	ENST00000276211		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
In-frame	ENST00000437787	ENST00000370922		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5CDS-intron	ENST00000437787	ENST00000370921		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
Frame-shit	ENST00000466436	ENST00000276211		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
In-frame	ENST00000466436	ENST00000370922		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5CDS-intron	ENST00000466436	ENST00000370921		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
Frame-shit	ENST00000320893	ENST00000276211		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
In-frame	ENST00000320893	ENST00000370922		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5CDS-intron	ENST00000320893	ENST00000370921		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CD99L2	chrX	149999704	-	ARHGAP36	chrX	130215734	+
5CDS-intron	ENST00000346329	ENST00000396037		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000346329	ENST00000539510		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000346329	ENST00000536558		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000346329	ENST00000404299		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000346329	ENST00000381424		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000301843	ENST00000396037		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000301843	ENST00000539510		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000301843	ENST00000536558		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000301843	ENST00000404299		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000301843	ENST00000381424		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
3UTR-intron	ENST00000527622	ENST00000396037		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
3UTR-intron	ENST00000527622	ENST00000539510		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
3UTR-intron	ENST00000527622	ENST00000536558		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
3UTR-intron	ENST00000527622	ENST00000404299		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
3UTR-intron	ENST00000527622	ENST00000381424		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000376561	ENST00000396037		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000376561	ENST00000539510		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000376561	ENST00000536558		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000376561	ENST00000404299		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
5CDS-intron	ENST00000376561	ENST00000381424		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
intron-intron	ENST00000538675	ENST00000396037		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
intron-intron	ENST00000538675	ENST00000539510		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
intron-intron	ENST00000538675	ENST00000536558		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
intron-intron	ENST00000538675	ENST00000404299		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
intron-intron	ENST00000538675	ENST00000381424		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	CTTN	chr11	70256066	+	ST8SIA1	chr12	22219369	-
In-frame	ENST00000405015	ENST00000233114		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405015	ENST00000409908		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405015	ENST00000409476		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405015	ENST00000539945		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405015	ENST00000544381		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405015	ENST00000394423		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
5CDS-intron	ENST00000405015	ENST00000462944		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000431489	ENST00000233114		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000431489	ENST00000409908		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000431489	ENST00000409476		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000431489	ENST00000539945		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000431489	ENST00000544381		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000431489	ENST00000394423		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
5CDS-intron	ENST00000431489	ENST00000462944		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000354487	ENST00000233114		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000354487	ENST00000409908		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000354487	ENST00000409476		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000354487	ENST00000539945		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000354487	ENST00000544381		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000354487	ENST00000394423		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
5CDS-intron	ENST00000354487	ENST00000462944		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000263991	ENST00000233114		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000263991	ENST00000409908		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000263991	ENST00000409476		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000263991	ENST00000539945		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000263991	ENST00000544381		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000263991	ENST00000394423		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
5CDS-intron	ENST00000263991	ENST00000462944		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405289	ENST00000233114		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405289	ENST00000409908		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405289	ENST00000409476		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405289	ENST00000539945		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405289	ENST00000544381		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000405289	ENST00000394423		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
5CDS-intron	ENST00000405289	ENST00000462944		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-3CDS	ENST00000496857	ENST00000233114		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-3CDS	ENST00000496857	ENST00000409908		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-3CDS	ENST00000496857	ENST00000409476		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-3CDS	ENST00000496857	ENST00000539945		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-3CDS	ENST00000496857	ENST00000544381		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-3CDS	ENST00000496857	ENST00000394423		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
intron-intron	ENST00000496857	ENST00000462944		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EHBP1	chr2	63170985	+	MDH1	chr2	63831830	+
In-frame	ENST00000264211	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000264211	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000264211	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000264211	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000400422	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000400422	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000400422	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000400422	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000602326	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000602326	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000602326	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000602326	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000374935	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000374935	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000374935	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-intron	ENST00000374935	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000374937	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000374937	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000374937	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000374937	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000536266	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000536266	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000536266	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000536266	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000374933	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000374933	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000374933	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-intron	ENST00000374933	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000544689	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000544689	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000544689	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5UTR-intron	ENST00000544689	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000356916	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000356916	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
In-frame	ENST00000356916	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000356916	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000374927	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000374927	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
Frame-shit	ENST00000374927	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5CDS-intron	ENST00000374927	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000537738	ENST00000602624		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000537738	ENST00000375048		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-3CDS	ENST00000537738	ENST00000415136		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
intron-intron	ENST00000537738	ENST00000477229		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EIF4G3	chr1	21267984	-	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000256951	ENST00000396373		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-intron	ENST00000256951	ENST00000544715		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
intron-3CDS	ENST00000537612	ENST00000396373		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
intron-intron	ENST00000537612	ENST00000544715		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-3CDS	ENST00000431267	ENST00000396373		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-intron	ENST00000431267	ENST00000544715		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-3CDS	ENST00000544053	ENST00000396373		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-intron	ENST00000544053	ENST00000544715		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
3UTR-3CDS	ENST00000542289	ENST00000396373		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
3UTR-intron	ENST00000542289	ENST00000544715		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-3CDS	ENST00000396301	ENST00000396373		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
5UTR-intron	ENST00000396301	ENST00000544715		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EMP1	chr12	13349806	+	ETV6	chr12	12043875	+
Frame-shit	ENST00000263253	ENST00000261574		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EP300	chr22	41489102	+	IPO5	chr13	98634757	+
Frame-shit	ENST00000263253	ENST00000490680		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EP300	chr22	41489102	+	IPO5	chr13	98634757	+
Frame-shit	ENST00000263253	ENST00000539640		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EP300	chr22	41489102	+	IPO5	chr13	98634757	+
5CDS-intron	ENST00000263253	ENST00000493492		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	EP300	chr22	41489102	+	IPO5	chr13	98634757	+
Frame-shit	ENST00000264235	ENST00000273390		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
Frame-shit	ENST00000264235	ENST00000463700		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
5CDS-intron	ENST00000264235	ENST00000472117		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
Frame-shit	ENST00000316626	ENST00000273390		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
Frame-shit	ENST00000316626	ENST00000463700		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
5CDS-intron	ENST00000316626	ENST00000472117		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
intron-3CDS	ENST00000473886	ENST00000273390		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
intron-3CDS	ENST00000473886	ENST00000463700		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
intron-intron	ENST00000473886	ENST00000472117		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	GSK3B	chr3	119812194	-	MAATS1	chr3	119425656	+
In-frame	ENST00000355849	ENST00000327435		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	KHDRBS3	chr8	136594316	+	ADI1	chr2	3504764	-
In-frame	ENST00000355849	ENST00000382093		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	KHDRBS3	chr8	136594316	+	ADI1	chr2	3504764	-
intron-3CDS	ENST00000520981	ENST00000327435		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	KHDRBS3	chr8	136594316	+	ADI1	chr2	3504764	-
intron-3CDS	ENST00000520981	ENST00000382093		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	KHDRBS3	chr8	136594316	+	ADI1	chr2	3504764	-
intron-3CDS	ENST00000522578	ENST00000327435		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	KHDRBS3	chr8	136594316	+	ADI1	chr2	3504764	-
intron-3CDS	ENST00000522578	ENST00000382093		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	KHDRBS3	chr8	136594316	+	ADI1	chr2	3504764	-
3UTR-5UTR	ENST00000423278	ENST00000379277		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
3UTR-5UTR	ENST00000423278	ENST00000492419		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
3UTR-5UTR	ENST00000423278	ENST00000379286		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
3UTR-5UTR	ENST00000423278	ENST00000379279		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
3UTR-5UTR	ENST00000423278	ENST00000379283		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
3UTR-5UTR	ENST00000423278	ENST00000342308		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
3UTR-5UTR	ENST00000423278	ENST00000202834		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	MIAT	chr22	27068950	+	TMEM230	chr20	5090091	-
In-frame	ENST00000361671	ENST00000311713		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000361671	ENST00000278856		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000361671	ENST00000529106		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000361671	ENST00000525239		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000361671	ENST00000525752		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
5CDS-intron	ENST00000361671	ENST00000540620		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
In-frame	ENST00000376040	ENST00000311713		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000376040	ENST00000278856		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000376040	ENST00000529106		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000376040	ENST00000525239		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
Frame-shit	ENST00000376040	ENST00000525752		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
5CDS-intron	ENST00000376040	ENST00000540620		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NAA35	chr9	88577095	+	WDR74	chr11	62600603	-
5CDS-5UTR	ENST00000347330	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000347330	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000347330	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000413209	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000413209	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000413209	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000338641	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000338641	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000338641	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000403435	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000403435	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000403435	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000361452	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000361452	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000361452	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000403999	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000403999	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000403999	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000334961	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000334961	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000334961	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000353887	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000353887	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000353887	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000361166	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000361166	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000361166	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000397789	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000397789	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000397789	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000361676	ENST00000543831		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-5UTR	ENST00000361676	ENST00000369416		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
5CDS-3UTR	ENST00000361676	ENST00000471656		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	NF2	chr22	30000101	+	HSD3B2	chr1	119957954	+
In-frame	ENST00000297438	ENST00000220764		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000297438	ENST00000519007		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000297438	ENST00000522161		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
In-frame	ENST00000451899	ENST00000220764		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000451899	ENST00000519007		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000451899	ENST00000522161		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
In-frame	ENST00000520659	ENST00000220764		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000520659	ENST00000519007		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000520659	ENST00000522161		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	OSGIN2	chr8	90926974	+	DECR1	chr8	91029352	+
5CDS-intron	ENST00000413366	ENST00000443584		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000413366	ENST00000449996		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000413366	ENST00000262406		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
5CDS-intron	ENST00000413366	ENST00000577186		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000583361	ENST00000443584		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000583361	ENST00000449996		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000583361	ENST00000262406		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
3UTR-intron	ENST00000583361	ENST00000577186		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	PRKCA	chr17	64302245	+	RGS9	chr17	63115270	+
5UTR-intron	ENST00000338244	ENST00000478553		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000338244	ENST00000379400		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000338244	ENST00000379376		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-intron	ENST00000379333	ENST00000478553		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000379333	ENST00000379400		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000379333	ENST00000379376		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-intron	ENST00000424750	ENST00000478553		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000424750	ENST00000379400		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000424750	ENST00000379376		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-intron	ENST00000468355	ENST00000478553		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000468355	ENST00000379400		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
5UTR-5UTR	ENST00000468355	ENST00000379376		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC23A2	chr20	4951439	-	RASSF2	chr20	4781708	-
In-frame	ENST00000320230	ENST00000322028		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC25A22	chr11	794458	-	POLR2L	chr11	840480	-
In-frame	ENST00000531214	ENST00000322028		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SLC25A22	chr11	794458	-	POLR2L	chr11	840480	-
In-frame	ENST00000563480	ENST00000307961		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000563480	ENST00000568588		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000563480	ENST00000564517		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
In-frame	ENST00000395589	ENST00000307961		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000395589	ENST00000568588		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000395589	ENST00000564517		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
In-frame	ENST00000316634	ENST00000307961		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000316634	ENST00000568588		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000316634	ENST00000564517		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
In-frame	ENST00000307979	ENST00000307961		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000307979	ENST00000568588		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000307979	ENST00000564517		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
intron-3CDS	ENST00000566658	ENST00000307961		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
intron-5UTR	ENST00000566658	ENST00000568588		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
intron-intron	ENST00000566658	ENST00000564517		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	SNAPC5	chr15	66789980	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000438423	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000438423	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000438423	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000267811	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000267811	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000267811	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000452095	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000452095	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000452095	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000333725	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000333725	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000333725	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000557843	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000557843	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000557843	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000560764	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000560764	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000560764	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000543579	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000543579	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000543579	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000537840	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000537840	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000537840	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000343827	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000343827	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000343827	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000559710	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000559710	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000559710	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000559703	ENST00000515137		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000559703	ENST00000265498		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
intron-intron	ENST00000559703	ENST00000506797		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	TCF12	chr15	57213296	+	MGST2	chr4	140599697	+
Frame-shit	ENST00000334512	ENST00000369023		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
5CDS-5UTR	ENST00000334512	ENST00000489266		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
5CDS-5UTR	ENST00000334512	ENST00000538652		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
5CDS-5UTR	ENST00000334512	ENST00000369017		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-3CDS	ENST00000478357	ENST00000369023		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-5UTR	ENST00000478357	ENST00000489266		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-5UTR	ENST00000478357	ENST00000538652		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-5UTR	ENST00000478357	ENST00000369017		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-3CDS	ENST00000446377	ENST00000369023		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-5UTR	ENST00000446377	ENST00000489266		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-5UTR	ENST00000446377	ENST00000538652		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
intron-5UTR	ENST00000446377	ENST00000369017		TCGA	LD	BRCA	TCGA-GI-A2C9-01A	ZMIZ1	chr10	80976031	+	NSMCE4A	chr10	123733596	-
In-frame	ENST00000335221	ENST00000261313		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000335221	ENST00000542939		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
In-frame	ENST00000321892	ENST00000261313		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000321892	ENST00000542939		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
In-frame	ENST00000306378	ENST00000261313		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000306378	ENST00000542939		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
In-frame	ENST00000424123	ENST00000261313		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000424123	ENST00000542939		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
intron-3CDS	ENST00000577770	ENST00000261313		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
intron-intron	ENST00000577770	ENST00000542939		TCGA	LD	BRCA	TCGA-GM-A2D9-01A	BPTF	chr17	65960520	+	PEBP1	chr12	118575844	+
5CDS-5UTR	ENST00000407721	ENST00000526239		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DHCR7	chr11	71155039	-	KRTAP5-11	chr11	71293203	-
5CDS-3UTR	ENST00000407721	ENST00000398530		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DHCR7	chr11	71155039	-	KRTAP5-11	chr11	71293203	-
5CDS-5UTR	ENST00000355527	ENST00000526239		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DHCR7	chr11	71155039	-	KRTAP5-11	chr11	71293203	-
5CDS-3UTR	ENST00000355527	ENST00000398530		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DHCR7	chr11	71155039	-	KRTAP5-11	chr11	71293203	-
5CDS-intron	ENST00000585892	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000585892	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000585892	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000314646	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000314646	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000359692	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000359692	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000389253	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000389253	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000355667	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000355667	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-intron	ENST00000408974	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
5CDS-3UTR	ENST00000408974	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000420083		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000449870		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000318511		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000407004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000589998		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000250241		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000592763		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000588657		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-intron	ENST00000591819	ENST00000590261		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
intron-3UTR	ENST00000591819	ENST00000586544		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	DNM2	chr19	10934575	+	ILF3	chr19	10799226	+
In-frame	ENST00000256383	ENST00000315266		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
In-frame	ENST00000256383	ENST00000478722		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-intron	ENST00000256383	ENST00000459628		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-intron	ENST00000256383	ENST00000543237		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-intron	ENST00000256383	ENST00000305960		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-3UTR	ENST00000256383	ENST00000544752		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
In-frame	ENST00000466499	ENST00000315266		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
In-frame	ENST00000466499	ENST00000478722		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-intron	ENST00000466499	ENST00000459628		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-intron	ENST00000466499	ENST00000543237		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-intron	ENST00000466499	ENST00000305960		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
5CDS-3UTR	ENST00000466499	ENST00000544752		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	EIF2S1	chr14	67841264	+	GPHN	chr14	67291192	+
In-frame	ENST00000393997	ENST00000348579		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
5CDS-5UTR	ENST00000393997	ENST00000566075		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
In-frame	ENST00000360833	ENST00000348579		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
5CDS-5UTR	ENST00000360833	ENST00000566075		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
In-frame	ENST00000477898	ENST00000348579		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
5CDS-5UTR	ENST00000477898	ENST00000566075		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
intron-3CDS	ENST00000571638	ENST00000348579		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
intron-5UTR	ENST00000571638	ENST00000566075		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ELMO3	chr16	67237486	+	ZDHHC1	chr16	67429469	-
5UTR-5UTR	ENST00000563588	ENST00000589037		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000563588	ENST00000253788		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000563588	ENST00000589913		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-intron	ENST00000563588	ENST00000590864		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000424889	ENST00000589037		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000424889	ENST00000253788		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000424889	ENST00000589913		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-intron	ENST00000424889	ENST00000590864		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000328273	ENST00000589037		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000328273	ENST00000253788		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-5UTR	ENST00000328273	ENST00000589913		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5UTR-intron	ENST00000328273	ENST00000590864		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	PHKG2	chr16	30759811	+	RPL27	chr17	41150766	+
5CDS-intron	ENST00000299853	ENST00000567004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000299853	ENST00000542527		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-3UTR	ENST00000299853	ENST00000569656		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000299853	ENST00000562695		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000564209	ENST00000567004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000564209	ENST00000542527		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-3UTR	ENST00000564209	ENST00000569656		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000564209	ENST00000562695		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000418581	ENST00000567004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000418581	ENST00000542527		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-3UTR	ENST00000418581	ENST00000569656		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000418581	ENST00000562695		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000359210	ENST00000567004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000359210	ENST00000542527		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-3UTR	ENST00000359210	ENST00000569656		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000359210	ENST00000562695		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
intron-intron	ENST00000564256	ENST00000567004		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
intron-intron	ENST00000564256	ENST00000542527		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
intron-3UTR	ENST00000564256	ENST00000569656		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
intron-intron	ENST00000564256	ENST00000562695		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	POLR3E	chr16	22337116	+	C16orf52	chr16	22098614	+
5CDS-intron	ENST00000375759	ENST00000375838		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
5CDS-intron	ENST00000375759	ENST00000375847		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
5CDS-intron	ENST00000375759	ENST00000375849		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
5CDS-3UTR	ENST00000375759	ENST00000483270		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
intron-intron	ENST00000471538	ENST00000375838		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
intron-intron	ENST00000471538	ENST00000375847		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
intron-intron	ENST00000471538	ENST00000375849		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
intron-3UTR	ENST00000471538	ENST00000483270		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	SPEN	chr1	16248844	+	DNAJC16	chr1	15893594	+
Frame-shit	ENST00000253048	ENST00000221859		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ZC3H4	chr19	47597227	-	POLR2I	chr19	36605314	-
5UTR-3CDS	ENST00000594019	ENST00000221859		TCGA	LD	BRCA	TCGA-GM-A2DB-01A	ZC3H4	chr19	47597227	-	POLR2I	chr19	36605314	-
5CDS-5UTR	ENST00000554335	ENST00000557625		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SAMD4A	chr14	55169298	+	FRMD6-AS2	chr14	52051001	-
5CDS-5UTR	ENST00000251091	ENST00000557625		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SAMD4A	chr14	55169298	+	FRMD6-AS2	chr14	52051001	-
3UTR-5UTR	ENST00000555112	ENST00000557625		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SAMD4A	chr14	55169298	+	FRMD6-AS2	chr14	52051001	-
5CDS-5UTR	ENST00000392067	ENST00000557625		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SAMD4A	chr14	55169298	+	FRMD6-AS2	chr14	52051001	-
5CDS-5UTR	ENST00000357634	ENST00000557625		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SAMD4A	chr14	55169298	+	FRMD6-AS2	chr14	52051001	-
intron-5UTR	ENST00000555192	ENST00000557625		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SAMD4A	chr14	55169298	+	FRMD6-AS2	chr14	52051001	-
In-frame	ENST00000269886	ENST00000600132		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000269886	ENST00000318934		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000269886	ENST00000262970		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
5CDS-intron	ENST00000269886	ENST00000595096		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000598564	ENST00000600132		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000598564	ENST00000318934		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000598564	ENST00000262970		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
5CDS-intron	ENST00000598564	ENST00000595096		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000417295	ENST00000600132		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000417295	ENST00000318934		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
In-frame	ENST00000417295	ENST00000262970		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
5CDS-intron	ENST00000417295	ENST00000595096		TCGA	LD	BRCA	TCGA-GM-A2DC-01A	SH3GL1	chr19	4400321	-	ANKRD24	chr19	4219588	+
5UTR-3CDS	ENST00000228862	ENST00000014930		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
5UTR-intron	ENST00000228862	ENST00000540916		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
5UTR-intron	ENST00000228862	ENST00000536942		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-3CDS	ENST00000298573	ENST00000014930		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-intron	ENST00000298573	ENST00000540916		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-intron	ENST00000298573	ENST00000536942		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-3CDS	ENST00000545864	ENST00000014930		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-intron	ENST00000545864	ENST00000540916		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-intron	ENST00000545864	ENST00000536942		TCGA	LD	BRCA	TCGA-GM-A2DD-01A	DUSP16	chr12	12715051	-	HEBP1	chr12	13142349	-
intron-intron	ENST00000375441	ENST00000541084		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000375441	ENST00000346342		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000375441	ENST00000375581		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-3UTR	ENST00000375441	ENST00000473085		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000451881	ENST00000541084		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000451881	ENST00000346342		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000451881	ENST00000375581		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-3UTR	ENST00000451881	ENST00000473085		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000326335	ENST00000541084		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000326335	ENST00000346342		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000326335	ENST00000375581		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-3UTR	ENST00000326335	ENST00000473085		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000375440	ENST00000541084		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000375440	ENST00000346342		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000375440	ENST00000375581		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-3UTR	ENST00000375440	ENST00000473085		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000463426	ENST00000541084		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000463426	ENST00000346342		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-intron	ENST00000463426	ENST00000375581		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
intron-3UTR	ENST00000463426	ENST00000473085		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	CUL4A	chr13	113873802	+	F7	chr13	113768066	+
In-frame	ENST00000452825	ENST00000375304		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000452825	ENST00000168216		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000452825	ENST00000375298		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
5CDS-5UTR	ENST00000452825	ENST00000495986		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375401	ENST00000375304		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375401	ENST00000168216		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375401	ENST00000375298		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
5CDS-5UTR	ENST00000375401	ENST00000495986		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000404049	ENST00000375304		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000404049	ENST00000168216		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000404049	ENST00000375298		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
5CDS-5UTR	ENST00000404049	ENST00000495986		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375379	ENST00000375304		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375379	ENST00000168216		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375379	ENST00000375298		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
5CDS-5UTR	ENST00000375379	ENST00000495986		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375383	ENST00000375304		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375383	ENST00000168216		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
In-frame	ENST00000375383	ENST00000375298		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
5CDS-5UTR	ENST00000375383	ENST00000495986		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
intron-3CDS	ENST00000465402	ENST00000375304		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
intron-3CDS	ENST00000465402	ENST00000168216		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
intron-3CDS	ENST00000465402	ENST00000375298		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
intron-5UTR	ENST00000465402	ENST00000495986		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	KDM5C	chrX	53246325	-	HSD17B10	chrX	53459359	-
Frame-shit	ENST00000292363	ENST00000315489		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	RNF126	chr19	663047	-	ODF3L2	chr19	464364	-
In-frame	ENST00000292363	ENST00000382696		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	RNF126	chr19	663047	-	ODF3L2	chr19	464364	-
Frame-shit	ENST00000539652	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000539652	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000539652	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000539652	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000556010	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000556010	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000556010	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000556010	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000358230	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000358230	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000358230	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000358230	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
intron-3CDS	ENST00000544599	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
intron-3CDS	ENST00000544599	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
intron-3CDS	ENST00000544599	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
intron-intron	ENST00000544599	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000286424	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000286424	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000286424	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000286424	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000398033	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000398033	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000398033	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000398033	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000542724	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000542724	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
Frame-shit	ENST00000542724	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000542724	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5UTR-3CDS	ENST00000535812	ENST00000398016		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5UTR-3CDS	ENST00000535812	ENST00000359742		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5UTR-3CDS	ENST00000535812	ENST00000286445		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5UTR-intron	ENST00000535812	ENST00000542021		TCGA	LD	BRCA	TCGA-GM-A2DF-01A	TMBIM4	chr12	66563635	-	GRIP1	chr12	66839288	-
5CDS-intron	ENST00000535741	ENST00000260184		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000535741	ENST00000511577		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000535741	ENST00000505890		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000535741	ENST00000515088		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000510413	ENST00000260184		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000510413	ENST00000511577		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000510413	ENST00000505890		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000510413	ENST00000515088		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5UTR-intron	ENST00000503716	ENST00000260184		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5UTR-intron	ENST00000503716	ENST00000511577		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5UTR-intron	ENST00000503716	ENST00000505890		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5UTR-intron	ENST00000503716	ENST00000515088		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000357115	ENST00000260184		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000357115	ENST00000511577		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000357115	ENST00000505890		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000357115	ENST00000515088		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000507224	ENST00000260184		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000507224	ENST00000511577		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000507224	ENST00000505890		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
5CDS-intron	ENST00000507224	ENST00000515088		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	LRBA	chr4	151336590	-	DDX60L	chr4	169414036	-
3UTR-3CDS	ENST00000398922	ENST00000360289		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000398922	ENST00000448642		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000398922	ENST00000404387		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000398922	ENST00000298649		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
3UTR-3CDS	ENST00000398922	ENST00000359426		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
3UTR-3UTR	ENST00000398922	ENST00000494253		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
Frame-shit	ENST00000532971	ENST00000360289		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
Frame-shit	ENST00000532971	ENST00000448642		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
Frame-shit	ENST00000532971	ENST00000404387		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
Frame-shit	ENST00000532971	ENST00000298649		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
Frame-shit	ENST00000532971	ENST00000359426		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
5CDS-3UTR	ENST00000532971	ENST00000494253		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	METTL12	chr11	62433418	+	HK1	chr10	71103583	+
In-frame	ENST00000445299	ENST00000314118		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000445299	ENST00000421265		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000445299	ENST00000541663		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000445299	ENST00000495440		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
In-frame	ENST00000323460	ENST00000314118		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000323460	ENST00000421265		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000323460	ENST00000541663		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000323460	ENST00000495440		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
In-frame	ENST00000419026	ENST00000314118		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000419026	ENST00000421265		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000419026	ENST00000541663		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000419026	ENST00000495440		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
3UTR-3CDS	ENST00000489744	ENST00000314118		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
3UTR-intron	ENST00000489744	ENST00000421265		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
3UTR-intron	ENST00000489744	ENST00000541663		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
3UTR-intron	ENST00000489744	ENST00000495440		TCGA	LD	BRCA	TCGA-GM-A2DH-01A	SENP5	chr3	196630481	+	PIGX	chr3	196460630	+
Frame-shit	ENST00000307102	ENST00000354216		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
Frame-shit	ENST00000307102	ENST00000369892		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
Frame-shit	ENST00000307102	ENST00000358711		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
Frame-shit	ENST00000307102	ENST00000369908		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
5CDS-intron	ENST00000307102	ENST00000492660		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
intron-3CDS	ENST00000566326	ENST00000354216		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
intron-3CDS	ENST00000566326	ENST00000369892		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
intron-3CDS	ENST00000566326	ENST00000358711		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
intron-3CDS	ENST00000566326	ENST00000369908		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
intron-intron	ENST00000566326	ENST00000492660		TCGA	LD	BRCA	TCGA-GM-A2DK-01A	MAP2K1	chr15	66737045	+	UCKL1	chr20	62577996	-
intron-5UTR	ENST00000546088	ENST00000329758		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474489	-	TRIM49	chr11	89540453	-
intron-intron	ENST00000546088	ENST00000532501		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474489	-	TRIM49	chr11	89540453	-
5UTR-5UTR	ENST00000448108	ENST00000329758		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474489	-	TRIM49	chr11	89540453	-
5UTR-intron	ENST00000448108	ENST00000532501		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474489	-	TRIM49	chr11	89540453	-
intron-5UTR	ENST00000546088	ENST00000432771		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474488	-	TRIM49C	chr11	89765565	+
intron-5UTR	ENST00000546088	ENST00000448984		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474488	-	TRIM49C	chr11	89765565	+
5UTR-5UTR	ENST00000448108	ENST00000432771		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474488	-	TRIM49C	chr11	89765565	+
5UTR-5UTR	ENST00000448108	ENST00000448984		TCGA	LD	BRCA	TCGA-GM-A2DL-01A	TAF1D	chr11	93474488	-	TRIM49C	chr11	89765565	+
Frame-shit	ENST00000369762	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	ATP6AP1	chrX	153664862	+	CPB1	chr3	148552348	+
Frame-shit	ENST00000369762	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	ATP6AP1	chrX	153664862	+	CPB1	chr3	148552348	+
5CDS-intron	ENST00000369762	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	ATP6AP1	chrX	153664862	+	CPB1	chr3	148552348	+
intron-3CDS	ENST00000484908	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	ATP6AP1	chrX	153664862	+	CPB1	chr3	148552348	+
intron-3CDS	ENST00000484908	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	ATP6AP1	chrX	153664862	+	CPB1	chr3	148552348	+
intron-intron	ENST00000484908	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	ATP6AP1	chrX	153664862	+	CPB1	chr3	148552348	+
intron-3CDS	ENST00000361677	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	RUNDC1	chr17	41108280	+	CPB1	chr3	148577758	+
intron-3CDS	ENST00000361677	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	RUNDC1	chr17	41108280	+	CPB1	chr3	148577758	+
intron-3UTR	ENST00000361677	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	RUNDC1	chr17	41108280	+	CPB1	chr3	148577758	+
5CDS-intron	ENST00000308893	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
5CDS-intron	ENST00000308893	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
5CDS-intron	ENST00000308893	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
intron-intron	ENST00000543033	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
intron-intron	ENST00000543033	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
intron-intron	ENST00000543033	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
intron-intron	ENST00000279394	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
intron-intron	ENST00000279394	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
intron-intron	ENST00000279394	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
5CDS-intron	ENST00000416441	ENST00000491148		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
5CDS-intron	ENST00000416441	ENST00000282957		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
5CDS-intron	ENST00000416441	ENST00000498639		TCGA	LD	BRCA	TCGA-GM-A2DM-01A	TAOK2	chr16	29998091	+	CPB1	chr3	148572233	+
5CDS-intron	ENST00000196371	ENST00000607334		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	OXCT1	chr5	41840553	-	DLEU2	chr13	50571555	-
5CDS-intron	ENST00000509987	ENST00000607334		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	OXCT1	chr5	41840553	-	DLEU2	chr13	50571555	-
intron-intron	ENST00000512084	ENST00000607334		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	OXCT1	chr5	41840553	-	DLEU2	chr13	50571555	-
intron-intron	ENST00000510634	ENST00000607334		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	OXCT1	chr5	41840553	-	DLEU2	chr13	50571555	-
intron-intron	ENST00000513081	ENST00000607334		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	OXCT1	chr5	41840553	-	DLEU2	chr13	50571555	-
5UTR-3CDS	ENST00000393799	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393799	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393799	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
3UTR-3CDS	ENST00000530427	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
3UTR-3CDS	ENST00000530427	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
3UTR-3CDS	ENST00000530427	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393800	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393800	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393800	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000534534	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000534534	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000534534	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000524845	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000524845	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000524845	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000265637	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000265637	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000265637	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000524904	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000524904	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000524904	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393801	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393801	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000393801	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000265636	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000265636	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000265636	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000529710	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000529710	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5UTR-3CDS	ENST00000529710	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
intron-3CDS	ENST00000527403	ENST00000533211		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
intron-3CDS	ENST00000527403	ENST00000309996		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
intron-3CDS	ENST00000527403	ENST00000529997		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PPP6R3	chr11	68228295	+	SPTBN2	chr11	66483452	-
5CDS-intron	ENST00000328195	ENST00000397166		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PROSC	chr8	37633534	+	DDHD2	chr8	38082758	+
5CDS-intron	ENST00000328195	ENST00000520272		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PROSC	chr8	37633534	+	DDHD2	chr8	38082758	+
5CDS-intron	ENST00000328195	ENST00000528888		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PROSC	chr8	37633534	+	DDHD2	chr8	38082758	+
5CDS-intron	ENST00000328195	ENST00000517385		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PROSC	chr8	37633534	+	DDHD2	chr8	38082758	+
5CDS-intron	ENST00000328195	ENST00000529845		TCGA	LD	BRCA	TCGA-GM-A3NW-01A	PROSC	chr8	37633534	+	DDHD2	chr8	38082758	+
Frame-shit	ENST00000397066	ENST00000272462		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	CCNF	chr16	2483068	+	MALL	chr2	110843334	-
In-frame	ENST00000397066	ENST00000427178		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	CCNF	chr16	2483068	+	MALL	chr2	110843334	-
intron-3CDS	ENST00000366730	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-intron	ENST00000366730	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
In-frame	ENST00000391865	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5CDS-intron	ENST00000391865	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-3CDS	ENST00000366726	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-intron	ENST00000366726	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-3CDS	ENST00000312726	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-intron	ENST00000312726	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
In-frame	ENST00000366728	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5CDS-intron	ENST00000366728	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
In-frame	ENST00000366723	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5CDS-intron	ENST00000366723	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-3CDS	ENST00000366722	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-intron	ENST00000366722	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-3CDS	ENST00000366721	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5UTR-intron	ENST00000366721	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-3CDS	ENST00000366718	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-intron	ENST00000366718	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-3CDS	ENST00000470040	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-intron	ENST00000470040	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-3CDS	ENST00000366716	ENST00000040877		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
intron-intron	ENST00000366716	ENST00000483404		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	GUK1	chr1	228328064	+	TARBP1	chr1	234603396	-
5CDS-intron	ENST00000435962	ENST00000545170		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000429774		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000393287		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000502250		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000503767		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000340660		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000532032		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000435962	ENST00000554491		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000545170		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000429774		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000393287		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000502250		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000503767		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000340660		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000532032		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000340892	ENST00000554491		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000545170		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000429774		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000393287		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000502250		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000503767		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000340660		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000532032		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000360594	ENST00000554491		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000545170		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000429774		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000393287		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000502250		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000503767		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000340660		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000532032		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000556018	ENST00000554491		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000545170		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000429774		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000393287		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000502250		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000503767		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000340660		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000532032		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
intron-intron	ENST00000555302	ENST00000554491		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	TC2N	chr14	92278656	-	ATXN3	chr14	92516880	-
5CDS-intron	ENST00000392882	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000392882	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000392882	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-5UTR	ENST00000392882	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000358655	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000358655	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000358655	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-5UTR	ENST00000358655	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000355338	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000355338	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000355338	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-5UTR	ENST00000355338	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000344102	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000344102	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000344102	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-5UTR	ENST00000344102	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000557135	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000557135	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000557135	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-5UTR	ENST00000557135	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000556645	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000556645	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-intron	ENST00000556645	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
5CDS-5UTR	ENST00000556645	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
intron-intron	ENST00000554084	ENST00000607272		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
intron-intron	ENST00000554084	ENST00000234420		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
intron-intron	ENST00000554084	ENST00000540021		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
intron-5UTR	ENST00000554084	ENST00000538136		TCGA	LD	BRCA	TCGA-GM-A3XL-01A	WARS	chr14	100803399	-	MSH6	chr2	48025750	+
Frame-shit	ENST00000542838	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000542838	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-5UTR	ENST00000542838	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000542838	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
Frame-shit	ENST00000251758	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000251758	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-5UTR	ENST00000251758	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000251758	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
Frame-shit	ENST00000407793	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000407793	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-5UTR	ENST00000407793	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000407793	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
Frame-shit	ENST00000228264	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000228264	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-5UTR	ENST00000228264	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000228264	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
Frame-shit	ENST00000545668	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000545668	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-5UTR	ENST00000545668	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000545668	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
Frame-shit	ENST00000350437	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000350437	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-5UTR	ENST00000350437	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
5CDS-intron	ENST00000350437	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
intron-3CDS	ENST00000539673	ENST00000369304		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
intron-intron	ENST00000539673	ENST00000539363		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
intron-5UTR	ENST00000539673	ENST00000538811		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
intron-intron	ENST00000539673	ENST00000481236		TCGA	LD	BRCA	TCGA-HN-A2NL-01A	DDX11	chr12	31231471	+	ITGA10	chr1	145527613	-
intron-3CDS	ENST00000609205	ENST00000360906		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
intron-3CDS	ENST00000609205	ENST00000402280		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
intron-3CDS	ENST00000609205	ENST00000342905		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
intron-3CDS	ENST00000609205	ENST00000404025		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
Frame-shit	ENST00000360270	ENST00000360906		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
Frame-shit	ENST00000360270	ENST00000402280		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
Frame-shit	ENST00000360270	ENST00000342905		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
Frame-shit	ENST00000360270	ENST00000404025		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	MSN	chrX	64887720	+	NLRC4	chr2	32460637	-
5CDS-5UTR	ENST00000369239	ENST00000546088		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PNISR	chr6	99858617	-	TAF1D	chr11	93465457	-
5CDS-intron	ENST00000369239	ENST00000448108		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PNISR	chr6	99858617	-	TAF1D	chr11	93465457	-
5CDS-5UTR	ENST00000438806	ENST00000546088		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PNISR	chr6	99858617	-	TAF1D	chr11	93465457	-
5CDS-intron	ENST00000438806	ENST00000448108		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PNISR	chr6	99858617	-	TAF1D	chr11	93465457	-
intron-5UTR	ENST00000466057	ENST00000546088		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PNISR	chr6	99858617	-	TAF1D	chr11	93465457	-
intron-intron	ENST00000466057	ENST00000448108		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PNISR	chr6	99858617	-	TAF1D	chr11	93465457	-
Frame-shit	ENST00000373232	ENST00000395011		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000373232	ENST00000395010		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000373232	ENST00000355790		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000373232	ENST00000373224		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000373232	ENST00000358141		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
Frame-shit	ENST00000608321	ENST00000395011		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000608321	ENST00000395010		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000608321	ENST00000355790		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000608321	ENST00000373224		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-intron	ENST00000608321	ENST00000358141		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
intron-3CDS	ENST00000495346	ENST00000395011		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000495346	ENST00000395010		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000495346	ENST00000355790		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000495346	ENST00000373224		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000495346	ENST00000358141		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	PPA1	chr10	71977568	-	LRRC20	chr10	72083786	-
5CDS-5UTR	ENST00000367469	ENST00000373257		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SASH1	chr6	148711398	+	LPIN3	chr20	39974436	+
5CDS-intron	ENST00000367469	ENST00000491528		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SASH1	chr6	148711398	+	LPIN3	chr20	39974436	+
5CDS-5UTR	ENST00000367467	ENST00000373257		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SASH1	chr6	148711398	+	LPIN3	chr20	39974436	+
5CDS-intron	ENST00000367467	ENST00000491528		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SASH1	chr6	148711398	+	LPIN3	chr20	39974436	+
intron-5UTR	ENST00000470750	ENST00000373257		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SASH1	chr6	148711398	+	LPIN3	chr20	39974436	+
intron-intron	ENST00000470750	ENST00000491528		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SASH1	chr6	148711398	+	LPIN3	chr20	39974436	+
intron-3CDS	ENST00000456518	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
intron-intron	ENST00000456518	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
intron-intron	ENST00000456518	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
In-frame	ENST00000397174	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000397174	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000397174	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
In-frame	ENST00000402904	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000402904	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000402904	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
Frame-shit	ENST00000361191	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000361191	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000361191	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
In-frame	ENST00000397171	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000397171	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000397171	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
Frame-shit	ENST00000361705	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000361705	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000361705	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
In-frame	ENST00000326197	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000326197	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000326197	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
Frame-shit	ENST00000372595	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372595	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372595	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
Frame-shit	ENST00000337495	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000337495	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000337495	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
In-frame	ENST00000372596	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372596	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372596	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
Frame-shit	ENST00000372597	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372597	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372597	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
intron-3CDS	ENST00000472037	ENST00000360403		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
intron-intron	ENST00000472037	ENST00000372183		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
intron-intron	ENST00000472037	ENST00000480675		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SCMH1	chr1	41578955	-	EIF2B3	chr1	45316675	-
In-frame	ENST00000377707	ENST00000376238		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SHB	chr9	38067926	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000377707	ENST00000537648		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SHB	chr9	38067926	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000377707	ENST00000495823		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SHB	chr9	38067926	-	SLC28A3	chr9	86928369	-
In-frame	ENST00000377700	ENST00000376238		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SHB	chr9	38067926	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000377700	ENST00000537648		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SHB	chr9	38067926	-	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000377700	ENST00000495823		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SHB	chr9	38067926	-	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000511211	ENST00000542191		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-5UTR	ENST00000511211	ENST00000261368		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-5UTR	ENST00000511211	ENST00000379538		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-5UTR	ENST00000511211	ENST00000379533		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-5UTR	ENST00000511211	ENST00000379536		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-5UTR	ENST00000511211	ENST00000261367		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-5UTR	ENST00000511211	ENST00000414317		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-intron	ENST00000511211	ENST00000503116		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
intron-intron	ENST00000511211	ENST00000504884		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000542191		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000261368		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000379538		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000379533		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000379536		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000261367		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000261369	ENST00000414317		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000261369	ENST00000503116		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000261369	ENST00000504884		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000542191		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000261368		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000379538		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000379533		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000379536		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000261367		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000513881	ENST00000414317		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000513881	ENST00000503116		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000513881	ENST00000504884		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000542191		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000261368		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000379538		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000379533		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000379536		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000261367		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000395451	ENST00000414317		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000395451	ENST00000503116		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000395451	ENST00000504884		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000542191		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000261368		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000379538		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000379533		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000379536		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000261367		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-5UTR	ENST00000506996	ENST00000414317		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000506996	ENST00000503116		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
5CDS-intron	ENST00000506996	ENST00000504884		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SNX24	chr5	122181388	+	SNCAIP	chr5	121726784	+
In-frame	ENST00000310613	ENST00000353151		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	SULT1B1	chr4	70596219	-	CSN2	chr4	70824787	-
intron-3CDS	ENST00000435962	ENST00000545170		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000435962	ENST00000429774		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000435962	ENST00000393287		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000435962	ENST00000502250		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000435962	ENST00000503767		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000435962	ENST00000340660		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000435962	ENST00000532032		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000435962	ENST00000554491		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000340892	ENST00000545170		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000340892	ENST00000429774		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000340892	ENST00000393287		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000340892	ENST00000502250		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000340892	ENST00000503767		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000340892	ENST00000340660		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000340892	ENST00000532032		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000340892	ENST00000554491		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000360594	ENST00000545170		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000360594	ENST00000429774		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000360594	ENST00000393287		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000360594	ENST00000502250		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000360594	ENST00000503767		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000360594	ENST00000340660		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000360594	ENST00000532032		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000360594	ENST00000554491		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000556018	ENST00000545170		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000556018	ENST00000429774		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000556018	ENST00000393287		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000556018	ENST00000502250		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000556018	ENST00000503767		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000556018	ENST00000340660		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000556018	ENST00000532032		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000556018	ENST00000554491		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000555302	ENST00000545170		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000555302	ENST00000429774		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-3CDS	ENST00000555302	ENST00000393287		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000555302	ENST00000502250		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000555302	ENST00000503767		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000555302	ENST00000340660		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-intron	ENST00000555302	ENST00000532032		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
intron-5UTR	ENST00000555302	ENST00000554491		TCGA	LD	BRCA	TCGA-JL-A3YW-01A	TC2N	chr14	92246920	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000380749	ENST00000335670		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380749	ENST00000309157		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380749	ENST00000261523		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380749	ENST00000449337		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380749	ENST00000560004		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
intron-intron	ENST00000361263	ENST00000335670		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
intron-intron	ENST00000361263	ENST00000309157		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
intron-intron	ENST00000361263	ENST00000261523		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
intron-intron	ENST00000361263	ENST00000449337		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
intron-intron	ENST00000361263	ENST00000560004		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380748	ENST00000335670		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380748	ENST00000309157		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380748	ENST00000261523		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380748	ENST00000449337		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380748	ENST00000560004		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5UTR-intron	ENST00000489072	ENST00000335670		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5UTR-intron	ENST00000489072	ENST00000309157		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5UTR-intron	ENST00000489072	ENST00000261523		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5UTR-intron	ENST00000489072	ENST00000449337		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5UTR-intron	ENST00000489072	ENST00000560004		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380747	ENST00000335670		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380747	ENST00000309157		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380747	ENST00000261523		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380747	ENST00000449337		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000380747	ENST00000560004		TCGA	LD	BRCA	TCGA-LD-A74U-01A	HMGN1	chr21	40720218	-	RORA	chr15	61468655	-
In-frame	ENST00000268719	ENST00000293195		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000544854		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000420580		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000581530		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000455107		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000583917		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000442102		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000582944		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000268719	ENST00000413947		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
5CDS-5UTR	ENST00000268719	ENST00000581969		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000293195		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000544854		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000420580		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000581530		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000455107		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000583917		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000442102		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000582944		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
In-frame	ENST00000376345	ENST00000413947		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
5CDS-5UTR	ENST00000376345	ENST00000581969		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000293195		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000544854		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000420580		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000581530		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000455107		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000583917		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000442102		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000582944		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-3CDS	ENST00000579871	ENST00000413947		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
intron-5UTR	ENST00000579871	ENST00000581969		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	GID4	chr17	17943216	+	FDXR	chr17	72862998	-
Frame-shit	ENST00000389467	ENST00000280379		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000389467	ENST00000393632		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000389467	ENST00000393630		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000389467	ENST00000546600		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000389467	ENST00000552738		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000389467	ENST00000393629		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
5CDS-intron	ENST00000389467	ENST00000552115		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
5CDS-intron	ENST00000389467	ENST00000549378		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
5CDS-intron	ENST00000389467	ENST00000551397		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000446231	ENST00000280379		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000446231	ENST00000393632		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000446231	ENST00000393630		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000446231	ENST00000546600		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000446231	ENST00000552738		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
Frame-shit	ENST00000446231	ENST00000393629		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
5CDS-intron	ENST00000446231	ENST00000552115		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
5CDS-intron	ENST00000446231	ENST00000549378		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
5CDS-intron	ENST00000446231	ENST00000551397		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000565224	ENST00000280379		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000565224	ENST00000393632		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000565224	ENST00000393630		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000565224	ENST00000546600		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000565224	ENST00000552738		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000565224	ENST00000393629		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-intron	ENST00000565224	ENST00000552115		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-intron	ENST00000565224	ENST00000549378		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-intron	ENST00000565224	ENST00000551397		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000567737	ENST00000280379		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000567737	ENST00000393632		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000567737	ENST00000393630		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000567737	ENST00000546600		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000567737	ENST00000552738		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-3CDS	ENST00000567737	ENST00000393629		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-intron	ENST00000567737	ENST00000552115		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-intron	ENST00000567737	ENST00000549378		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
intron-intron	ENST00000567737	ENST00000551397		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	SMG1	chr16	18879845	-	MON2	chr12	62979074	+
In-frame	ENST00000369422	ENST00000355044		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
In-frame	ENST00000369422	ENST00000423111		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
In-frame	ENST00000369422	ENST00000303745		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
5CDS-intron	ENST00000369422	ENST00000529665		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
5CDS-intron	ENST00000369422	ENST00000527407		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
intron-3CDS	ENST00000494328	ENST00000355044		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
intron-3CDS	ENST00000494328	ENST00000423111		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
intron-3CDS	ENST00000494328	ENST00000303745		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
intron-intron	ENST00000494328	ENST00000529665		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
intron-intron	ENST00000494328	ENST00000527407		TCGA	LD	BRCA	TCGA-LD-A7W5-01A	TECTB	chr10	114046149	+	ATRNL1	chr10	117486758	+
5CDS-3UTR	ENST00000359282	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000359282	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000603815	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000603815	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000437231	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000437231	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000447282	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000447282	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000549863	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000549863	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000359462	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000359462	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000546463	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000546463	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000552296	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000552296	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000552819	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000552819	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000455667	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000455667	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000439930	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000439930	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-3UTR	ENST00000548933	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
5CDS-intron	ENST00000548933	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
intron-3UTR	ENST00000541275	ENST00000262225		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
intron-intron	ENST00000541275	ENST00000509052		TCGA	LD	BRCA	TCGA-LD-A7W6-01A	PCBP2	chr12	53862616	+	TMED2	chr12	124082475	+
Frame-shit	ENST00000430627	ENST00000394859		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	CDK12	chr17	37628016	+	ANKRD13B	chr17	27934760	+
Frame-shit	ENST00000447079	ENST00000394859		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	CDK12	chr17	37628016	+	ANKRD13B	chr17	27934760	+
intron-3CDS	ENST00000559545	ENST00000394859		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	CDK12	chr17	37628016	+	ANKRD13B	chr17	27934760	+
5CDS-intron	ENST00000394287	ENST00000318698		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MED1	chr17	37604051	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000394287	ENST00000566473		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MED1	chr17	37604051	-	ANKFN1	chr17	54262110	+
5CDS-3UTR	ENST00000394287	ENST00000574292		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MED1	chr17	37604051	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000300651	ENST00000318698		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MED1	chr17	37604051	-	ANKFN1	chr17	54262110	+
5CDS-intron	ENST00000300651	ENST00000566473		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MED1	chr17	37604051	-	ANKFN1	chr17	54262110	+
5CDS-3UTR	ENST00000300651	ENST00000574292		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MED1	chr17	37604051	-	ANKFN1	chr17	54262110	+
5CDS-5UTR	ENST00000416426	ENST00000499247		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000416426	ENST00000268957		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-intron	ENST00000416426	ENST00000509385		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000284073	ENST00000499247		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000284073	ENST00000268957		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-intron	ENST00000284073	ENST00000509385		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000322684	ENST00000499247		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000322684	ENST00000268957		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-intron	ENST00000322684	ENST00000509385		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000442934	ENST00000499247		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000442934	ENST00000268957		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-intron	ENST00000442934	ENST00000509385		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000579180	ENST00000499247		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-5UTR	ENST00000579180	ENST00000268957		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
5CDS-intron	ENST00000579180	ENST00000509385		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
3UTR-5UTR	ENST00000579505	ENST00000499247		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
3UTR-5UTR	ENST00000579505	ENST00000268957		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
3UTR-intron	ENST00000579505	ENST00000509385		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	MSI2	chr17	55704664	+	TOB1	chr17	48941524	-
intron-3CDS	ENST00000475441	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000475441	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000475441	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-intron	ENST00000475441	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000531126	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000531126	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000531126	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-intron	ENST00000531126	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000488745	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000488745	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000488745	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-intron	ENST00000488745	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000483436	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000483436	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000483436	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
5UTR-intron	ENST00000483436	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384581	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384581	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384581	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-intron	ENST00000384581	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384584	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384584	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384584	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-intron	ENST00000384584	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384342	ENST00000371399		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384342	ENST00000072644		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000384342	ENST00000539954		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
intron-intron	ENST00000384342	ENST00000469457		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	SNHG12	chr1	28908102	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000336308	ENST00000346872		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000394189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000439167		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000535189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000377944		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000377945		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000377952		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000377958		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000346243		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000350532		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000351680		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000467757		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000439016		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000336308	ENST00000583368		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000578232	ENST00000346872		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000394189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000439167		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000535189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000377944		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000377945		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000377952		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000377958		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000346243		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000350532		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000351680		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000467757		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000439016		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578232	ENST00000583368		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000544210	ENST00000346872		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000394189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000439167		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000535189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000377944		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000377945		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000377952		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000377958		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000346243		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000350532		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000351680		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000467757		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000439016		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000544210	ENST00000583368		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000394250	ENST00000346872		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000394189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000439167		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000535189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000377944		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000377945		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000377952		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000377958		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000346243		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000350532		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000351680		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000467757		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000439016		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000394250	ENST00000583368		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000580611	ENST00000346872		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000394189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000439167		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000535189		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000377944		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000377945		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000377952		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000377958		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000346243		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000350532		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000351680		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000467757		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000439016		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000580611	ENST00000583368		TCGA	LD	BRCA	TCGA-LD-A9QF-01A	STARD3	chr17	37817338	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000330560	ENST00000265769		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000330560	ENST00000540823		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000330560	ENST00000397649		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000330560	ENST00000437154		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000330560	ENST00000518516		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000380665	ENST00000265769		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000380665	ENST00000540823		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000380665	ENST00000397649		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000380665	ENST00000437154		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
5CDS-intron	ENST00000380665	ENST00000518516		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
3UTR-intron	ENST00000521098	ENST00000265769		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
3UTR-intron	ENST00000521098	ENST00000540823		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
3UTR-intron	ENST00000521098	ENST00000397649		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
3UTR-intron	ENST00000521098	ENST00000437154		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
3UTR-intron	ENST00000521098	ENST00000518516		TCGA	LD	BRCA	TCGA-LL-A440-01A	CDCA2	chr8	25361060	+	ADAM28	chr8	24166154	+
In-frame	ENST00000265689	ENST00000393958		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
In-frame	ENST00000265689	ENST00000393960		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
In-frame	ENST00000265689	ENST00000355677		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000265689	ENST00000524491		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-intron	ENST00000265689	ENST00000529047		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-intron	ENST00000265689	ENST00000393955		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-intron	ENST00000265689	ENST00000528224		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-3CDS	ENST00000533728	ENST00000393958		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-3CDS	ENST00000533728	ENST00000393960		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-3CDS	ENST00000533728	ENST00000355677		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-5UTR	ENST00000533728	ENST00000524491		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-intron	ENST00000533728	ENST00000529047		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-intron	ENST00000533728	ENST00000393955		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
intron-intron	ENST00000533728	ENST00000528224		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
In-frame	ENST00000356135	ENST00000393958		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
In-frame	ENST00000356135	ENST00000393960		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
In-frame	ENST00000356135	ENST00000355677		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000356135	ENST00000524491		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-intron	ENST00000356135	ENST00000529047		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-intron	ENST00000356135	ENST00000393955		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
5CDS-intron	ENST00000356135	ENST00000528224		TCGA	LD	BRCA	TCGA-LL-A440-01A	CHKA	chr11	67864486	-	PC	chr11	66639630	-
Frame-shit	ENST00000294053	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000294053	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000294053	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000294053	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000294053	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000294053	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000294053	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000538039	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000538039	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000538039	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000538039	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000538039	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000538039	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000538039	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000437826	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000437826	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000437826	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000437826	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000437826	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000437826	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000437826	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000340729	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000340729	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000340729	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000340729	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000340729	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000340729	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000340729	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000543042	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000543042	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000543042	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000543042	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000543042	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000543042	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000543042	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000445069	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000445069	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000445069	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000445069	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000445069	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000445069	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000445069	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000538021	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000538021	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000538021	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000538021	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000538021	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000538021	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-intron	ENST00000538021	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000542555	ENST00000334456		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000542555	ENST00000376450		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000542555	ENST00000444035		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000542555	ENST00000544570		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000542555	ENST00000418754		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000542555	ENST00000540345		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
intron-intron	ENST00000542555	ENST00000540380		TCGA	LD	BRCA	TCGA-LL-A441-01A	CLPB	chr11	72069924	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000262879	ENST00000373973		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000262879	ENST00000349339		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000262879	ENST00000538900		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000397042	ENST00000373973		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000397042	ENST00000349339		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000397042	ENST00000538900		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000397038	ENST00000373973		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000397038	ENST00000349339		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000397038	ENST00000538900		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000537204	ENST00000373973		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000537204	ENST00000349339		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000537204	ENST00000538900		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000397040	ENST00000373973		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000397040	ENST00000349339		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000397040	ENST00000538900		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000490114	ENST00000373973		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000490114	ENST00000349339		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000490114	ENST00000538900		TCGA	LD	BRCA	TCGA-LL-A441-01A	RALGAPB	chr20	37101712	+	CNBD2	chr20	34618279	+
In-frame	ENST00000295951	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295951	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5CDS-intron	ENST00000295951	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000416870	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-intron	ENST00000416870	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000295952	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5CDS-intron	ENST00000295952	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000383718	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5CDS-intron	ENST00000383718	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000428312	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5CDS-intron	ENST00000428312	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
In-frame	ENST00000449503	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5CDS-intron	ENST00000449503	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-3CDS	ENST00000472546	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
3UTR-intron	ENST00000472546	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-3CDS	ENST00000442599	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5UTR-intron	ENST00000442599	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000495364	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-intron	ENST00000495364	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000445912		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000252034		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000358929		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000320492		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000414324		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000380562		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000380575		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000380584		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000458204		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000357036		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000429192		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000380553		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000380576		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-3CDS	ENST00000494088	ENST00000320399		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
intron-intron	ENST00000494088	ENST00000466878		TCGA	LD	BRCA	TCGA-LL-A441-01A	SLMAP	chr3	57875827	+	ELN	chr7	73480024	+
5CDS-5UTR	ENST00000535572	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000535572	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000535572	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000535572	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000535572	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000537687	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000537687	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000537687	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000537687	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000537687	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000315939	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000315939	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000315939	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000315939	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000315939	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000447667	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000447667	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000447667	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000447667	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000447667	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000530271	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000530271	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000530271	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000530271	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000530271	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
3UTR-5UTR	ENST00000540360	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
3UTR-5UTR	ENST00000540360	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
3UTR-5UTR	ENST00000540360	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
3UTR-intron	ENST00000540360	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
3UTR-intron	ENST00000540360	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000340908	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000340908	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000340908	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000340908	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000340908	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000574564	ENST00000537031		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000574564	ENST00000310594		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000574564	ENST00000397196		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000574564	ENST00000542408		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000574564	ENST00000545747		TCGA	LD	BRCA	TCGA-LL-A441-01A	WNK1	chr12	939326	+	WNT5B	chr12	1740464	+
intron-3CDS	ENST00000225964	ENST00000491148		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	COL1A1	chr17	48261893	-	CPB1	chr3	148577674	+
intron-3CDS	ENST00000225964	ENST00000282957		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	COL1A1	chr17	48261893	-	CPB1	chr3	148577674	+
intron-3UTR	ENST00000225964	ENST00000498639		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	COL1A1	chr17	48261893	-	CPB1	chr3	148577674	+
intron-3CDS	ENST00000254810	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000254810	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-3CDS	ENST00000593254	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000593254	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-3CDS	ENST00000592643	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000592643	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-3CDS	ENST00000591890	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000591890	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-3CDS	ENST00000587560	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000587560	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-3CDS	ENST00000589599	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000589599	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-3CDS	ENST00000586607	ENST00000254816		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
intron-intron	ENST00000586607	ENST00000587339		TCGA	LD	BRCA	TCGA-LL-A5YM-01A	H3F3B	chr17	73774187	-	TRIM47	chr17	73874585	-
5CDS-5UTR	ENST00000274695	ENST00000434779		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
5CDS-5UTR	ENST00000274695	ENST00000417624		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
5CDS-5UTR	ENST00000274695	ENST00000452602		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
intron-5UTR	ENST00000378624	ENST00000434779		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
intron-5UTR	ENST00000378624	ENST00000417624		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
intron-5UTR	ENST00000378624	ENST00000452602		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
5CDS-5UTR	ENST00000378610	ENST00000434779		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
5CDS-5UTR	ENST00000378610	ENST00000417624		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
5CDS-5UTR	ENST00000378610	ENST00000452602		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
intron-5UTR	ENST00000476517	ENST00000434779		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
intron-5UTR	ENST00000476517	ENST00000417624		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
intron-5UTR	ENST00000476517	ENST00000452602		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	CDKAL1	chr6	20548936	+	MTUS2-AS2	chr13	29814095	-
5CDS-5UTR	ENST00000408982	ENST00000579752		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	RABEP1	chr17	5212117	+	CDRT8	chr17	15008860	-
5CDS-5UTR	ENST00000262477	ENST00000579752		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	RABEP1	chr17	5212117	+	CDRT8	chr17	15008860	-
intron-5UTR	ENST00000537505	ENST00000579752		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	RABEP1	chr17	5212117	+	CDRT8	chr17	15008860	-
5CDS-5UTR	ENST00000546142	ENST00000579752		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	RABEP1	chr17	5212117	+	CDRT8	chr17	15008860	-
5CDS-5UTR	ENST00000341923	ENST00000579752		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	RABEP1	chr17	5212117	+	CDRT8	chr17	15008860	-
intron-5UTR	ENST00000570487	ENST00000579752		TCGA	LD	BRCA	TCGA-LL-A5YN-01A	RABEP1	chr17	5212117	+	CDRT8	chr17	15008860	-
Frame-shit	ENST00000308488	ENST00000331272		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
5CDS-intron	ENST00000308488	ENST00000470093		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
Frame-shit	ENST00000360355	ENST00000331272		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
5CDS-intron	ENST00000360355	ENST00000470093		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
intron-3CDS	ENST00000480887	ENST00000331272		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
intron-intron	ENST00000480887	ENST00000470093		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
5UTR-3CDS	ENST00000530604	ENST00000331272		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
5UTR-intron	ENST00000530604	ENST00000470093		TCGA	LD	BRCA	TCGA-LL-A5YP-01A	RSF1	chr11	77531574	-	FBXW4	chr10	103436193	-
intron-3CDS	ENST00000294304	ENST00000342922		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000402799		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000311027		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000406482		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000407859		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000349238		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000395344		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000395336		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000402192		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000294304	ENST00000405573		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-intron	ENST00000294304	ENST00000489415		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000342922		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000402799		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000311027		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000406482		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000407859		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000349238		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000395344		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000395336		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000402192		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-3CDS	ENST00000529481	ENST00000405573		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
intron-intron	ENST00000529481	ENST00000489415		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	LRP5	chr11	68208849	+	MADD	chr11	47345222	+
In-frame	ENST00000294064	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-5UTR	ENST00000294064	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-intron	ENST00000294064	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
In-frame	ENST00000531509	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-5UTR	ENST00000531509	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-intron	ENST00000531509	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
In-frame	ENST00000544263	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-5UTR	ENST00000544263	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-intron	ENST00000544263	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-3CDS	ENST00000529024	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-5UTR	ENST00000529024	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-intron	ENST00000529024	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-3CDS	ENST00000532963	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-5UTR	ENST00000532963	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-intron	ENST00000532963	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
In-frame	ENST00000531619	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-5UTR	ENST00000531619	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-intron	ENST00000531619	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-3CDS	ENST00000545272	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-5UTR	ENST00000545272	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-intron	ENST00000545272	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-3CDS	ENST00000526068	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-5UTR	ENST00000526068	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
intron-intron	ENST00000526068	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
Frame-shit	ENST00000534628	ENST00000265465		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-5UTR	ENST00000534628	ENST00000541089		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
5CDS-intron	ENST00000534628	ENST00000534785		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	NEU3	chr11	74705765	+	POLA2	chr11	65043363	+
In-frame	ENST00000279230	ENST00000312403		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5CDS-intron	ENST00000279230	ENST00000451616		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5CDS-intron	ENST00000279230	ENST00000541528		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
In-frame	ENST00000540288	ENST00000312403		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5CDS-intron	ENST00000540288	ENST00000451616		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5CDS-intron	ENST00000540288	ENST00000541528		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
In-frame	ENST00000325234	ENST00000312403		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5CDS-intron	ENST00000325234	ENST00000451616		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5CDS-intron	ENST00000325234	ENST00000541528		TCGA	LD	BRCA	TCGA-LL-A6FQ-01A	PLCB3	chr11	64023088	+	PGA5	chr11	61013418	+
5UTR-3CDS	ENST00000216181	ENST00000216071		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	MYH9	chr22	36783852	-	C22orf31	chr22	29456831	-
intron-3CDS	ENST00000475726	ENST00000216071		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	MYH9	chr22	36783852	-	C22orf31	chr22	29456831	-
intron-3CDS	ENST00000401701	ENST00000216071		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	MYH9	chr22	36783852	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000439590	ENST00000389916		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	RPL38	chr17	72200329	+	KIF19	chr17	72324564	+
Frame-shit	ENST00000311111	ENST00000389916		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	RPL38	chr17	72200329	+	KIF19	chr17	72324564	+
Frame-shit	ENST00000584577	ENST00000389916		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	RPL38	chr17	72200329	+	KIF19	chr17	72324564	+
Frame-shit	ENST00000534490	ENST00000389916		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	RPL38	chr17	72200329	+	KIF19	chr17	72324564	+
Frame-shit	ENST00000533498	ENST00000389916		TCGA	LD	BRCA	TCGA-LL-A6FR-01A	RPL38	chr17	72200329	+	KIF19	chr17	72324564	+
Frame-shit	ENST00000420886	ENST00000251195		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000420886	ENST00000466308		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000420886	ENST00000373220		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000420886	ENST00000520551		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000420886	ENST00000318121		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
Frame-shit	ENST00000267176	ENST00000251195		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000267176	ENST00000466308		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000267176	ENST00000373220		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000267176	ENST00000520551		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000267176	ENST00000318121		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
Frame-shit	ENST00000602750	ENST00000251195		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602750	ENST00000466308		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602750	ENST00000373220		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602750	ENST00000520551		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602750	ENST00000318121		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
Frame-shit	ENST00000602398	ENST00000251195		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602398	ENST00000466308		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602398	ENST00000373220		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602398	ENST00000520551		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
5CDS-intron	ENST00000602398	ENST00000318121		TCGA	LD	BRCA	TCGA-LL-A740-01A	SBNO1	chr12	123794257	-	CLSPN	chr1	36186581	-
In-frame	ENST00000421745	ENST00000234195		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
5CDS-3UTR	ENST00000421745	ENST00000469469		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
5CDS-intron	ENST00000421745	ENST00000354545		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
5CDS-intron	ENST00000421745	ENST00000406384		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
5CDS-intron	ENST00000421745	ENST00000407257		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
5CDS-intron	ENST00000421745	ENST00000417700		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
5CDS-intron	ENST00000421745	ENST00000402091		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	BIRC6	chr2	32823035	+	RMDN2	chr2	38294125	+
3UTR-intron	ENST00000414046	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
3UTR-intron	ENST00000414046	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
3UTR-intron	ENST00000414046	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000419355	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000419355	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000419355	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000457127	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000457127	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000457127	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000423496	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000423496	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000423496	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	HCP5	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000449934	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000449934	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000449934	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000417899	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000417899	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000417899	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000497496	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000497496	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000497496	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000427477	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000427477	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000427477	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000446505	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000446505	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000446505	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000547767	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000547767	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000547767	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000400322	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000400322	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000400322	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000493320	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000493320	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000493320	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000400325	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000400325	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000400325	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000547609	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000547609	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000547609	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000420259	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000420259	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000420259	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000468858	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000468858	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000468858	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000418465	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000418465	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000418465	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000432479	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000432479	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000432479	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000552236	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000552236	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000552236	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000438928	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000438928	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000438928	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000486844	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000486844	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000486844	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000415525	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000415525	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000415525	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000414473	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000414473	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000414473	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000546529	ENST00000515518		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000546529	ENST00000429839		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
intron-intron	ENST00000546529	ENST00000455884		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	MICA	chr6	31368540	+	TMEM232	chr5	109625141	-
In-frame	ENST00000381638	ENST00000544865		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
In-frame	ENST00000381638	ENST00000263073		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
In-frame	ENST00000381638	ENST00000354901		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
In-frame	ENST00000381638	ENST00000536871		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000381638	ENST00000573166		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000574474	ENST00000544865		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000574474	ENST00000263073		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000574474	ENST00000354901		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000574474	ENST00000536871		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
5UTR-5UTR	ENST00000574474	ENST00000573166		TCGA	LD	BRCA	TCGA-LL-A7SZ-01A	ZZEF1	chr17	3991972	-	SMG6	chr17	1989195	-
intron-intron	ENST00000315366	ENST00000262442		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000315366	ENST00000454412		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000315366	ENST00000608377		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000315366	ENST00000396001		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000315366	ENST00000579828		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000541197	ENST00000262442		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000541197	ENST00000454412		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000541197	ENST00000608377		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000541197	ENST00000396001		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000541197	ENST00000579828		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000503013	ENST00000262442		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000503013	ENST00000454412		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000503013	ENST00000608377		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000503013	ENST00000396001		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000503013	ENST00000579828		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	ARSJ	chr4	114824409	-	DNAH9	chr17	11828746	+
intron-intron	ENST00000405402	ENST00000535149		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-5UTR	ENST00000405402	ENST00000276079		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-5UTR	ENST00000405402	ENST00000373856		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-5UTR	ENST00000405402	ENST00000373841		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-intron	ENST00000405402	ENST00000490044		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-intron	ENST00000253458	ENST00000535149		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-5UTR	ENST00000253458	ENST00000276079		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-5UTR	ENST00000253458	ENST00000373856		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-5UTR	ENST00000253458	ENST00000373841		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-intron	ENST00000253458	ENST00000490044		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-intron	ENST00000393243	ENST00000535149		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-5UTR	ENST00000393243	ENST00000276079		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-5UTR	ENST00000393243	ENST00000373856		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-5UTR	ENST00000393243	ENST00000373841		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
5CDS-intron	ENST00000393243	ENST00000490044		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-intron	ENST00000471070	ENST00000535149		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-5UTR	ENST00000471070	ENST00000276079		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-5UTR	ENST00000471070	ENST00000373856		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-5UTR	ENST00000471070	ENST00000373841		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
intron-intron	ENST00000471070	ENST00000490044		TCGA	LD	BRCA	TCGA-LL-A8F5-01A	GSE1	chr16	85647004	+	NONO	chrX	70510479	+
Frame-shit	ENST00000427245	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
Frame-shit	ENST00000525682	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
Frame-shit	ENST00000236342	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
Frame-shit	ENST00000526219	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
Frame-shit	ENST00000374185	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
Frame-shit	ENST00000360009	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
3UTR-3CDS	ENST00000531955	ENST00000373237		TCGA	LD	BRCA	TCGA-OK-A5Q2-01A	DHDDS	chr1	26759499	+	PSMB2	chr1	36102033	-
5CDS-3UTR	ENST00000389629	ENST00000511211		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
5CDS-3UTR	ENST00000389629	ENST00000261369		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
5CDS-3UTR	ENST00000389629	ENST00000513881		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
5CDS-3UTR	ENST00000389629	ENST00000395451		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
5CDS-3UTR	ENST00000389629	ENST00000506996		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
3UTR-3UTR	ENST00000462276	ENST00000511211		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
3UTR-3UTR	ENST00000462276	ENST00000261369		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
3UTR-3UTR	ENST00000462276	ENST00000513881		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
3UTR-3UTR	ENST00000462276	ENST00000395451		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
3UTR-3UTR	ENST00000462276	ENST00000506996		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	RTF1	chr15	41709511	+	SNX24	chr5	122272429	+
Frame-shit	ENST00000244050	ENST00000417961		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48479466	+
Frame-shit	ENST00000244050	ENST00000361573		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48479466	+
5CDS-intron	ENST00000244050	ENST00000541138		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48479466	+
5CDS-intron	ENST00000244050	ENST00000539601		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48479466	+
5CDS-intron	ENST00000244050	ENST00000490250		TCGA	LD	BRCA	TCGA-OL-A5D6-01A	SNAI1	chr20	48599678	+	SLC9A8	chr20	48479466	+
Frame-shit	ENST00000346672	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000346672	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5CDS-intron	ENST00000346672	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000360962	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000360962	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5CDS-intron	ENST00000360962	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000527634	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000527634	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5CDS-intron	ENST00000527634	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000540737	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000540737	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5CDS-intron	ENST00000540737	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000532565	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000532565	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5CDS-intron	ENST00000532565	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000525449	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
Frame-shit	ENST00000525449	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5CDS-intron	ENST00000525449	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
intron-3CDS	ENST00000527368	ENST00000528176		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
intron-3CDS	ENST00000527368	ENST00000307998		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
intron-intron	ENST00000527368	ENST00000532648		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C11orf80	chr11	66595835	+	EFEMP2	chr11	65637708	-
5UTR-intron	ENST00000519561	ENST00000396623		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000519561	ENST00000415254		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000519561	ENST00000496501		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000519561	ENST00000379385		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000521889	ENST00000396623		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000521889	ENST00000415254		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000521889	ENST00000496501		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5UTR-intron	ENST00000521889	ENST00000379385		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000390159	ENST00000396623		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000390159	ENST00000415254		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000390159	ENST00000496501		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000390159	ENST00000379385		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000518860	ENST00000396623		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000518860	ENST00000415254		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000518860	ENST00000496501		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
intron-intron	ENST00000518860	ENST00000379385		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	C8orf44	chr8	67579936	+	ADHFE1	chr8	67383665	+
5CDS-intron	ENST00000437809	ENST00000368315		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000437809	ENST00000313695		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000437809	ENST00000361247		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000437809	ENST00000368316		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000437809	ENST00000462460		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-5UTR	ENST00000437809	ENST00000477754		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000437809	ENST00000313667		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000368331	ENST00000368315		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000368331	ENST00000313695		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000368331	ENST00000361247		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000368331	ENST00000368316		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000368331	ENST00000462460		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-5UTR	ENST00000368331	ENST00000477754		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000368331	ENST00000313667		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000271883	ENST00000368315		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000271883	ENST00000313695		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000271883	ENST00000361247		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000271883	ENST00000368316		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000271883	ENST00000462460		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-5UTR	ENST00000271883	ENST00000477754		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000271883	ENST00000313667		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000361040	ENST00000368315		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000361040	ENST00000313695		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000361040	ENST00000361247		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000361040	ENST00000368316		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000361040	ENST00000462460		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-5UTR	ENST00000361040	ENST00000477754		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5CDS-intron	ENST00000361040	ENST00000313667		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-intron	ENST00000471341	ENST00000368315		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-intron	ENST00000471341	ENST00000313695		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-intron	ENST00000471341	ENST00000361247		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-intron	ENST00000471341	ENST00000368316		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-intron	ENST00000471341	ENST00000462460		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-5UTR	ENST00000471341	ENST00000477754		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
5UTR-intron	ENST00000471341	ENST00000313667		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	GON4L	chr1	155790397	-	ARHGEF2	chr1	155966418	-
Frame-shit	ENST00000356554	ENST00000256652		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MAN1A2	chr1	118009049	+	CD101	chr1	117576482	+
Frame-shit	ENST00000356554	ENST00000369470		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MAN1A2	chr1	118009049	+	CD101	chr1	117576482	+
5CDS-3UTR	ENST00000356554	ENST00000467588		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MAN1A2	chr1	118009049	+	CD101	chr1	117576482	+
intron-3CDS	ENST00000482811	ENST00000256652		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MAN1A2	chr1	118009049	+	CD101	chr1	117576482	+
intron-3CDS	ENST00000482811	ENST00000369470		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MAN1A2	chr1	118009049	+	CD101	chr1	117576482	+
intron-3UTR	ENST00000482811	ENST00000467588		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MAN1A2	chr1	118009049	+	CD101	chr1	117576482	+
In-frame	ENST00000541925	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000541925	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
Frame-shit	ENST00000541925	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
intron-3CDS	ENST00000542156	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
intron-3CDS	ENST00000542156	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
intron-3CDS	ENST00000542156	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000370390	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000370390	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
Frame-shit	ENST00000370390	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
intron-3CDS	ENST00000451863	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
intron-3CDS	ENST00000451863	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
intron-3CDS	ENST00000451863	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000544228	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000544228	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
Frame-shit	ENST00000544228	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000445323	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
In-frame	ENST00000445323	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
Frame-shit	ENST00000445323	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
3UTR-3CDS	ENST00000538506	ENST00000304031		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
3UTR-3CDS	ENST00000538506	ENST00000402541		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
3UTR-3CDS	ENST00000538506	ENST00000406618		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MTMR1	chrX	149924337	+	HS1BP3	chr2	20840940	-
Frame-shit	ENST00000533035	ENST00000346672		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000533035	ENST00000360962		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000533035	ENST00000527634		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000533035	ENST00000540737		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000533035	ENST00000532565		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000533035	ENST00000525449		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
5CDS-intron	ENST00000533035	ENST00000527368		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000308110	ENST00000346672		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000308110	ENST00000360962		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000308110	ENST00000527634		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000308110	ENST00000540737		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000308110	ENST00000532565		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000308110	ENST00000525449		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
5CDS-intron	ENST00000308110	ENST00000527368		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000525006	ENST00000346672		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000525006	ENST00000360962		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000525006	ENST00000527634		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000525006	ENST00000540737		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000525006	ENST00000532565		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000525006	ENST00000525449		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
3UTR-intron	ENST00000525006	ENST00000527368		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	MUS81	chr11	65633365	+	C11orf80	chr11	66610320	+
5CDS-intron	ENST00000264555	ENST00000400723		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000264555	ENST00000570996		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000413872	ENST00000400723		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000413872	ENST00000570996		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000533464	ENST00000400723		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000533464	ENST00000570996		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000416188	ENST00000400723		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
5CDS-intron	ENST00000416188	ENST00000570996		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PHRF1	chr11	609411	+	GCGR	chr17	79766699	+
Frame-shit	ENST00000262741	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000262741	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
In-frame	ENST00000372006	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000372006	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
Frame-shit	ENST00000340332	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000340332	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
Frame-shit	ENST00000420542	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000420542	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
Frame-shit	ENST00000354242	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000354242	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
Frame-shit	ENST00000540385	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000540385	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
Frame-shit	ENST00000423209	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
5CDS-5UTR	ENST00000423209	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
intron-3CDS	ENST00000488808	ENST00000343304		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
intron-5UTR	ENST00000488808	ENST00000472710		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIK3R3	chr1	46527601	-	LRRC41	chr1	46747057	-
Frame-shit	ENST00000335312	ENST00000264560		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
In-frame	ENST00000335312	ENST00000338448		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5CDS-3UTR	ENST00000335312	ENST00000593172		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
Frame-shit	ENST00000539785	ENST00000264560		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
In-frame	ENST00000539785	ENST00000338448		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5CDS-3UTR	ENST00000539785	ENST00000593172		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
Frame-shit	ENST00000589578	ENST00000264560		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
In-frame	ENST00000589578	ENST00000338448		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5CDS-3UTR	ENST00000589578	ENST00000593172		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
Frame-shit	ENST00000537021	ENST00000264560		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
In-frame	ENST00000537021	ENST00000338448		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5CDS-3UTR	ENST00000537021	ENST00000593172		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000587482	ENST00000264560		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000587482	ENST00000338448		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5UTR-3UTR	ENST00000587482	ENST00000593172		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	PIP5K1C	chr19	3660964	-	PALM	chr19	746285	+
5CDS-5UTR	ENST00000296484	ENST00000360658		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-intron	ENST00000296484	ENST00000494383		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-intron	ENST00000296484	ENST00000597542		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-5UTR	ENST00000394970	ENST00000360658		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-intron	ENST00000394970	ENST00000494383		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-intron	ENST00000394970	ENST00000597542		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-5UTR	ENST00000474012	ENST00000360658		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-intron	ENST00000474012	ENST00000494383		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
5CDS-intron	ENST00000474012	ENST00000597542		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	POC1A	chr3	52156395	-	TLR9	chr3	52259651	-
intron-5UTR	ENST00000585748	ENST00000159111		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
intron-5UTR	ENST00000585748	ENST00000381759		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
intron-5UTR	ENST00000585748	ENST00000536461		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
intron-intron	ENST00000585748	ENST00000592175		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
5CDS-5UTR	ENST00000326873	ENST00000159111		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
5CDS-5UTR	ENST00000326873	ENST00000381759		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
5CDS-5UTR	ENST00000326873	ENST00000536461		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
5CDS-intron	ENST00000326873	ENST00000592175		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	STK11	chr19	1207202	+	KDM4B	chr19	5032877	+
Frame-shit	ENST00000367723	ENST00000383768		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000367723	ENST00000421010		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000608151	ENST00000383768		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000608151	ENST00000421010		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000610051	ENST00000383768		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000610051	ENST00000421010		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000263688	ENST00000383768		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000263688	ENST00000421010		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	SUCO	chr1	172560211	+	ZCWPW2	chr3	28476601	+
intron-3CDS	ENST00000437508	ENST00000544484		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000437508	ENST00000357008		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000437508	ENST00000309577		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000437508	ENST00000544040		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-intron	ENST00000437508	ENST00000540960		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000494872	ENST00000544484		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000494872	ENST00000357008		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000494872	ENST00000309577		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000494872	ENST00000544040		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-intron	ENST00000494872	ENST00000540960		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000338700	ENST00000544484		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000338700	ENST00000357008		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000338700	ENST00000309577		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-3CDS	ENST00000338700	ENST00000544040		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-intron	ENST00000338700	ENST00000540960		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	TRIM2	chr4	154073764	+	CHD4	chr12	6688083	-
intron-intron	ENST00000537532	ENST00000380753		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
intron-intron	ENST00000537532	ENST00000421196		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
intron-intron	ENST00000537532	ENST00000407674		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
intron-intron	ENST00000537532	ENST00000455190		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
intron-intron	ENST00000537532	ENST00000604428		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000539644	ENST00000380753		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000539644	ENST00000421196		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000539644	ENST00000407674		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000539644	ENST00000455190		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000539644	ENST00000604428		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000392404	ENST00000380753		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000392404	ENST00000421196		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000392404	ENST00000407674		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000392404	ENST00000455190		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000392404	ENST00000604428		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000538932	ENST00000380753		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000538932	ENST00000421196		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000538932	ENST00000407674		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000538932	ENST00000455190		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000538932	ENST00000604428		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000337815	ENST00000380753		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000337815	ENST00000421196		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000337815	ENST00000407674		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000337815	ENST00000455190		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
5CDS-intron	ENST00000337815	ENST00000604428		TCGA	LD	BRCA	TCGA-OL-A5D7-01A	ZNF664	chr12	124497022	+	AKR1C2	chr10	5048784	-
Frame-shit	ENST00000225719	ENST00000240328		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	CPD	chr17	28748001	+	TBX2	chr17	59485415	+
5CDS-intron	ENST00000225719	ENST00000586986		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	CPD	chr17	28748001	+	TBX2	chr17	59485415	+
Frame-shit	ENST00000543464	ENST00000240328		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	CPD	chr17	28748001	+	TBX2	chr17	59485415	+
5CDS-intron	ENST00000543464	ENST00000586986		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	CPD	chr17	28748001	+	TBX2	chr17	59485415	+
intron-3CDS	ENST00000584051	ENST00000240328		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	CPD	chr17	28748001	+	TBX2	chr17	59485415	+
intron-intron	ENST00000584051	ENST00000586986		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	CPD	chr17	28748001	+	TBX2	chr17	59485415	+
Frame-shit	ENST00000340296	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000340296	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000340296	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000340296	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000340296	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000340296	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000534253	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000534253	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000534253	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000534253	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000534253	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000534253	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000263811	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000263811	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000263811	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000263811	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000263811	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000263811	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000397119	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000397119	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000397119	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000397119	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000397119	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000397119	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000410079	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000410079	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000410079	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000410079	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000410079	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000410079	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000508530	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000508530	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000508530	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000508530	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000508530	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000508530	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409197	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409197	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409197	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409197	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409197	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000409197	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409317	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409317	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409317	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409317	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409317	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000409317	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409773	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409773	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409773	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409773	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409773	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000409773	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409453	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409453	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409453	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409453	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000409453	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000409453	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000358002	ENST00000344773		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000358002	ENST00000379624		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000358002	ENST00000342045		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000358002	ENST00000379632		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000358002	ENST00000361704		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000358002	ENST00000603461		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	DYNC1I2	chr2	172571953	+	BRE	chr2	28460069	+
Frame-shit	ENST00000233057	ENST00000263918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	EIF2AK2	chr2	37341874	-	STRN	chr2	37152351	-
Frame-shit	ENST00000233057	ENST00000379213		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	EIF2AK2	chr2	37341874	-	STRN	chr2	37152351	-
Frame-shit	ENST00000395127	ENST00000263918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	EIF2AK2	chr2	37341874	-	STRN	chr2	37152351	-
Frame-shit	ENST00000395127	ENST00000379213		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	EIF2AK2	chr2	37341874	-	STRN	chr2	37152351	-
In-frame	ENST00000405334	ENST00000263918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	EIF2AK2	chr2	37341874	-	STRN	chr2	37152351	-
In-frame	ENST00000405334	ENST00000379213		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	EIF2AK2	chr2	37341874	-	STRN	chr2	37152351	-
5CDS-5UTR	ENST00000276681	ENST00000259526		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	MAL2	chr8	120233997	+	NOV	chr8	120428626	+
3UTR-5UTR	ENST00000521748	ENST00000259526		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	MAL2	chr8	120233997	+	NOV	chr8	120428626	+
intron-3CDS	ENST00000369339	ENST00000472647		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
intron-3CDS	ENST00000369339	ENST00000367811		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
intron-intron	ENST00000369339	ENST00000469474		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
intron-3CDS	ENST00000369338	ENST00000472647		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
intron-3CDS	ENST00000369338	ENST00000367811		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
intron-intron	ENST00000369338	ENST00000469474		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
In-frame	ENST00000342960	ENST00000472647		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
In-frame	ENST00000342960	ENST00000367811		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
5CDS-intron	ENST00000342960	ENST00000469474		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	NBPF10	chr1	145325343	-	NME7	chr1	169102055	-
Frame-shit	ENST00000368218	ENST00000358595		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368218	ENST00000354396		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368218	ENST00000515192		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368218	ENST00000505755		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
5CDS-intron	ENST00000368218	ENST00000468970		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368216	ENST00000358595		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368216	ENST00000354396		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368216	ENST00000515192		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000368216	ENST00000505755		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
5CDS-intron	ENST00000368216	ENST00000468970		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000524343	ENST00000358595		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000524343	ENST00000354396		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000524343	ENST00000515192		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000524343	ENST00000505755		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
5CDS-intron	ENST00000524343	ENST00000468970		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000476229	ENST00000358595		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000476229	ENST00000354396		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000476229	ENST00000515192		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000476229	ENST00000505755		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-intron	ENST00000476229	ENST00000468970		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000481920	ENST00000358595		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000481920	ENST00000354396		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000481920	ENST00000515192		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-3CDS	ENST00000481920	ENST00000505755		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
intron-intron	ENST00000481920	ENST00000468970		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	RRNAD1	chr1	156699007	+	ARNT	chr1	150790506	-
Frame-shit	ENST00000271640	ENST00000367042		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000354848		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000441839		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000322875		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000367041		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000358170		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000322918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000271640	ENST00000361067		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-intron	ENST00000271640	ENST00000367047		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-intron	ENST00000271640	ENST00000357714		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-3UTR	ENST00000271640	ENST00000469535		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-3UTR	ENST00000271640	ENST00000360212		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-3UTR	ENST00000271640	ENST00000480003		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000367042		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000354848		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000441839		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000322875		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000367041		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000358170		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000322918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368962	ENST00000361067		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-intron	ENST00000368962	ENST00000367047		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-intron	ENST00000368962	ENST00000357714		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000368962	ENST00000469535		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000368962	ENST00000360212		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000368962	ENST00000480003		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000367042		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000354848		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000441839		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000322875		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000367041		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000358170		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000322918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
Frame-shit	ENST00000368969	ENST00000361067		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-intron	ENST00000368969	ENST00000367047		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-intron	ENST00000368969	ENST00000357714		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-3UTR	ENST00000368969	ENST00000469535		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-3UTR	ENST00000368969	ENST00000360212		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-3UTR	ENST00000368969	ENST00000480003		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000367042		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000354848		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000441839		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000322875		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000367041		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000358170		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000322918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000368963	ENST00000361067		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-intron	ENST00000368963	ENST00000367047		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-intron	ENST00000368963	ENST00000357714		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000368963	ENST00000469535		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000368963	ENST00000360212		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000368963	ENST00000480003		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000367042		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000354848		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000441839		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000322875		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000367041		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000358170		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000322918		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3CDS	ENST00000459773	ENST00000361067		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-intron	ENST00000459773	ENST00000367047		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-intron	ENST00000459773	ENST00000357714		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000459773	ENST00000469535		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000459773	ENST00000360212		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
intron-3UTR	ENST00000459773	ENST00000480003		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	SETDB1	chr1	150923957	+	CD46	chr1	207930359	+
5CDS-intron	ENST00000366601	ENST00000368130		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
5CDS-5UTR	ENST00000366601	ENST00000411768		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
5CDS-intron	ENST00000406207	ENST00000368130		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
5CDS-5UTR	ENST00000406207	ENST00000411768		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
5CDS-intron	ENST00000543662	ENST00000368130		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
5CDS-5UTR	ENST00000543662	ENST00000411768		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
3UTR-intron	ENST00000472011	ENST00000368130		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
3UTR-5UTR	ENST00000472011	ENST00000411768		TCGA	LD	BRCA	TCGA-OL-A5D8-01A	TBCE	chr1	235543464	+	AIM2	chr1	159102146	-
intron-3CDS	ENST00000375205	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
intron-3CDS	ENST00000375205	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
intron-3CDS	ENST00000411667	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
intron-3CDS	ENST00000411667	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000375202	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000375202	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000357054	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000357054	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000395220	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000395220	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000529487	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
In-frame	ENST00000529487	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
intron-3CDS	ENST00000460482	ENST00000537618		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
intron-3CDS	ENST00000460482	ENST00000373768		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	CCDC180	chr9	100075627	+	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000413795	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000413795	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000413795	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000413795	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000369138	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000369138	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000369138	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000369138	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000421544	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000421544	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000421544	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000421544	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000358361	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000358361	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000358361	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000358361	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000318991	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000318991	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000318991	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000318991	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000369137	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000369137	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
Frame-shit	ENST00000369137	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000369137	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
intron-3CDS	ENST00000369134	ENST00000274695		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
intron-3CDS	ENST00000369134	ENST00000378624		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
intron-3CDS	ENST00000369134	ENST00000378610		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
intron-intron	ENST00000369134	ENST00000476517		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	GRIK2	chr6	101847268	+	CDKAL1	chr6	21065279	+
5CDS-intron	ENST00000537618	ENST00000556107		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	NDUFA8	chr9	124921906	-	DNAJC25	chr9	114405137	+
5CDS-intron	ENST00000537618	ENST00000313525		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	NDUFA8	chr9	124921906	-	DNAJC25	chr9	114405137	+
5CDS-intron	ENST00000373768	ENST00000556107		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	NDUFA8	chr9	124921906	-	DNAJC25	chr9	114405137	+
5CDS-intron	ENST00000373768	ENST00000313525		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	NDUFA8	chr9	124921906	-	DNAJC25	chr9	114405137	+
Frame-shit	ENST00000369110	ENST00000368972		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	PREP	chr6	105730326	-	ARMC2	chr6	109215670	+
Frame-shit	ENST00000369110	ENST00000392644		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	PREP	chr6	105730326	-	ARMC2	chr6	109215670	+
5CDS-intron	ENST00000369110	ENST00000481850		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	PREP	chr6	105730326	-	ARMC2	chr6	109215670	+
5CDS-intron	ENST00000230122	ENST00000377989		TCGA	LD	BRCA	TCGA-OL-A5DA-01A	ZBTB24	chr6	109796602	-	CMAHP	chr6	25082107	-
In-frame	ENST00000593916	ENST00000322088		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
Frame-shit	ENST00000593916	ENST00000444322		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-intron	ENST00000593916	ENST00000477989		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-5UTR	ENST00000593916	ENST00000462990		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-3UTR	ENST00000593916	ENST00000473455		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
In-frame	ENST00000598770	ENST00000322088		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
Frame-shit	ENST00000598770	ENST00000444322		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-intron	ENST00000598770	ENST00000477989		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-5UTR	ENST00000598770	ENST00000462990		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-3UTR	ENST00000598770	ENST00000473455		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
In-frame	ENST00000599847	ENST00000322088		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
Frame-shit	ENST00000599847	ENST00000444322		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-intron	ENST00000599847	ENST00000477989		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-5UTR	ENST00000599847	ENST00000462990		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-3UTR	ENST00000599847	ENST00000473455		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
In-frame	ENST00000282292	ENST00000322088		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
Frame-shit	ENST00000282292	ENST00000444322		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-intron	ENST00000282292	ENST00000477989		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-5UTR	ENST00000282292	ENST00000462990		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
5CDS-3UTR	ENST00000282292	ENST00000473455		TCGA	LD	BRCA	TCGA-OL-A5RV-01A	ZNF773	chr19	58011481	+	PPP2R1A	chr19	52705197	+
Frame-shit	ENST00000349938	ENST00000305354		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ARMC9	chr2	232160966	+	TM4SF4	chr3	149216607	+
3UTR-3CDS	ENST00000483477	ENST00000305354		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ARMC9	chr2	232160966	+	TM4SF4	chr3	149216607	+
In-frame	ENST00000304874	ENST00000304895		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000304874	ENST00000421103		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000304874	ENST00000345660		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
5CDS-intron	ENST00000304874	ENST00000476486		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000380839	ENST00000304895		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000380839	ENST00000421103		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000380839	ENST00000345660		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
5CDS-intron	ENST00000380839	ENST00000476486		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000395332	ENST00000304895		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000395332	ENST00000421103		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000395332	ENST00000345660		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
5CDS-intron	ENST00000395332	ENST00000476486		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000395331	ENST00000304895		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000395331	ENST00000421103		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000395331	ENST00000345660		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
5CDS-intron	ENST00000395331	ENST00000476486		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
intron-3CDS	ENST00000464970	ENST00000304895		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
intron-3CDS	ENST00000464970	ENST00000421103		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
intron-3CDS	ENST00000464970	ENST00000345660		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
intron-intron	ENST00000464970	ENST00000476486		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	ASL	chr7	65541080	+	GUSB	chr7	65432894	-
In-frame	ENST00000382368	ENST00000425013		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	FBXL18	chr7	5530862	-	RNF216	chr7	5681007	-
In-frame	ENST00000382368	ENST00000389902		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	FBXL18	chr7	5530862	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000382368	ENST00000469375		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	FBXL18	chr7	5530862	-	RNF216	chr7	5681007	-
In-frame	ENST00000453700	ENST00000425013		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	FBXL18	chr7	5530862	-	RNF216	chr7	5681007	-
In-frame	ENST00000453700	ENST00000389902		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	FBXL18	chr7	5530862	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000453700	ENST00000469375		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	FBXL18	chr7	5530862	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000327171	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-intron	ENST00000327171	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
Frame-shit	ENST00000560031	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
5CDS-intron	ENST00000560031	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-3CDS	ENST00000396509	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-intron	ENST00000396509	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-3CDS	ENST00000543495	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-intron	ENST00000543495	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
5UTR-3CDS	ENST00000544523	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
5UTR-intron	ENST00000544523	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-3CDS	ENST00000559454	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-intron	ENST00000559454	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-3CDS	ENST00000561014	ENST00000261845		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-intron	ENST00000561014	ENST00000558841		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	GALK2	chr15	49462572	+	MAPK6	chr15	52350830	+
intron-5UTR	ENST00000560371	ENST00000348520		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000380038		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000389744		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000557575		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000553286		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000347839		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000555836		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000334553		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000246489		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000557450		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000554280		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000452929		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000560371	ENST00000445352		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000348520		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000380038		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000389744		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000557575		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000553286		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000347839		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000555836		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000334553		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000246489		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000557450		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000554280		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000452929		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000347662	ENST00000445352		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000348520		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000380038		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000389744		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000557575		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000553286		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000347839		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000555836		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000334553		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000246489		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000557450		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000554280		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000452929		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000392745	ENST00000445352		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000348520		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000380038		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000389744		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000557575		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000553286		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000347839		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000555836		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000334553		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000246489		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000557450		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000554280		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000452929		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
intron-5UTR	ENST00000539721	ENST00000445352		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000348520		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000380038		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000389744		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000557575		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000553286		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000347839		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000555836		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000334553		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000246489		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000557450		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000554280		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000452929		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5UTR-5UTR	ENST00000351691	ENST00000445352		TCGA	LD	BRCA	TCGA-OL-A5RW-01A	TRAF3	chr14	103296809	+	KLC1	chr14	104120901	+
5CDS-3UTR	ENST00000584601	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584601	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000406381	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000541774	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000445658	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540147	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000584450	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000269571	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000578199	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5CDS-3UTR	ENST00000540042	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000449052		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000443370		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000349350		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000348028		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000421100		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000427578		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000546292		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000546213		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000538115		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
intron-3UTR	ENST00000584888	ENST00000542585		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	ERBB2	chr17	37866734	+	ZAN	chr7	100392818	+
5UTR-3CDS	ENST00000378053	ENST00000284951		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-3CDS	ENST00000378053	ENST00000378072		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-5UTR	ENST00000378053	ENST00000486903		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-3CDS	ENST00000341420	ENST00000284951		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-3CDS	ENST00000341420	ENST00000378072		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-5UTR	ENST00000341420	ENST00000486903		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-3CDS	ENST00000462077	ENST00000284951		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-3CDS	ENST00000462077	ENST00000378072		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-5UTR	ENST00000462077	ENST00000486903		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	FLRT3	chr20	14318050	-	SEL1L2	chr20	13936777	-
5UTR-intron	ENST00000416067	ENST00000346872		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000394189		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000439167		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000535189		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000377944		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000377945		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000377952		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000377958		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000346243		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000350532		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000351680		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000467757		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000439016		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000416067	ENST00000583368		TCGA	LD	BRCA	TCGA-OL-A5RY-01A	TEKT4P2	chr21	9966322	-	IKZF3	chr17	37914218	-
In-frame	ENST00000333957	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000333957	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000446597	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000446597	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000536386	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000536386	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000396028	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000396028	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
Frame-shit	ENST00000542676	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
Frame-shit	ENST00000542676	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
Frame-shit	ENST00000544930	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
Frame-shit	ENST00000544930	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000545552	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
In-frame	ENST00000545552	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
5UTR-3CDS	ENST00000540703	ENST00000423676		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
5UTR-3CDS	ENST00000540703	ENST00000324290		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	C2CD5	chr12	22676360	-	LGALS9B	chr17	20356920	-
Frame-shit	ENST00000399273	ENST00000308249		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	CCDC144A	chr17	16638957	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000443444	ENST00000308249		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	CCDC144A	chr17	16638957	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000456009	ENST00000308249		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	CCDC144A	chr17	16638957	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000360524	ENST00000308249		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	CCDC144A	chr17	16638957	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000340621	ENST00000308249		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	CCDC144A	chr17	16638957	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000436374	ENST00000308249		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	CCDC144A	chr17	16638957	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000583610	ENST00000546136		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000381381		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000309359		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000451604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000537393		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000541536		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000396007		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000583610	ENST00000545921		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000583610	ENST00000541847		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000583610	ENST00000441133		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000583610	ENST00000536850		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000546136		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000381381		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000309359		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000451604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000537393		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000541536		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000396007		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000394294	ENST00000545921		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000394294	ENST00000541847		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000394294	ENST00000441133		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000394294	ENST00000536850		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000546136		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000381381		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000309359		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000451604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000537393		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000541536		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000396007		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000264658	ENST00000545921		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000264658	ENST00000541847		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000264658	ENST00000441133		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000264658	ENST00000536850		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000546136		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000381381		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000309359		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000451604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000537393		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000541536		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000396007		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000577399	ENST00000545921		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000577399	ENST00000541847		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000577399	ENST00000441133		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-intron	ENST00000577399	ENST00000536850		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	FBXL20	chr17	37414558	-	SOX5	chr12	23699358	-
intron-3CDS	ENST00000372583	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000372583	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000372583	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000372584	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000372584	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000372584	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000247584	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000247584	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000247584	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000429157	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000429157	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000429157	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000460604	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000460604	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000460604	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	HIVEP3	chr1	42330249	-	GPBP1L1	chr1	46099908	-
intron-intron	ENST00000228799	ENST00000371030		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	ITFG2	chr12	2933179	+	ZNF831	chr20	57721286	+
intron-intron	ENST00000419778	ENST00000371030		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	ITFG2	chr12	2933179	+	ZNF831	chr20	57721286	+
intron-intron	ENST00000542548	ENST00000371030		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	ITFG2	chr12	2933179	+	ZNF831	chr20	57721286	+
intron-intron	ENST00000545509	ENST00000371030		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	ITFG2	chr12	2933179	+	ZNF831	chr20	57721286	+
In-frame	ENST00000262746	ENST00000372242		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
In-frame	ENST00000262746	ENST00000372243		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
Frame-shit	ENST00000262746	ENST00000372244		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5CDS-intron	ENST00000262746	ENST00000476724		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5CDS-intron	ENST00000262746	ENST00000372237		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5CDS-intron	ENST00000262746	ENST00000372235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
Frame-shit	ENST00000319248	ENST00000372242		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
Frame-shit	ENST00000319248	ENST00000372243		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
Frame-shit	ENST00000319248	ENST00000372244		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5CDS-intron	ENST00000319248	ENST00000476724		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5CDS-intron	ENST00000319248	ENST00000372237		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5CDS-intron	ENST00000319248	ENST00000372235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
intron-3CDS	ENST00000372079	ENST00000372242		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
intron-3CDS	ENST00000372079	ENST00000372243		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
intron-3CDS	ENST00000372079	ENST00000372244		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
intron-intron	ENST00000372079	ENST00000476724		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
intron-intron	ENST00000372079	ENST00000372237		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
intron-intron	ENST00000372079	ENST00000372235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-3CDS	ENST00000483583	ENST00000372242		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-3CDS	ENST00000483583	ENST00000372243		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-3CDS	ENST00000483583	ENST00000372244		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-intron	ENST00000483583	ENST00000476724		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-intron	ENST00000483583	ENST00000372237		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-intron	ENST00000483583	ENST00000372235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PRDX1	chr1	45984610	-	TMEM53	chr1	45111136	-
5UTR-5UTR	ENST00000359947	ENST00000372583		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000359947	ENST00000372584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000359947	ENST00000247584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000359947	ENST00000429157		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000359947	ENST00000460604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-5UTR	ENST00000438120	ENST00000372583		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000438120	ENST00000372584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000438120	ENST00000247584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000438120	ENST00000429157		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5UTR-intron	ENST00000438120	ENST00000460604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000372413	ENST00000372583		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372413	ENST00000372584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372413	ENST00000247584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372413	ENST00000429157		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372413	ENST00000460604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000372414	ENST00000372583		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372414	ENST00000372584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372414	ENST00000247584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372414	ENST00000429157		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372414	ENST00000460604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000422171	ENST00000372583		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000422171	ENST00000372584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000422171	ENST00000247584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000422171	ENST00000429157		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000422171	ENST00000460604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000496447	ENST00000372583		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000496447	ENST00000372584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000496447	ENST00000247584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000496447	ENST00000429157		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
intron-intron	ENST00000496447	ENST00000460604		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	PTPRF	chr1	44003948	+	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000244040	ENST00000302584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	RAB22A	chr20	56886178	+	NEUROD2	chr17	37764318	-
3UTR-intron	ENST00000488949	ENST00000302584		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	RAB22A	chr20	56886178	+	NEUROD2	chr17	37764318	-
intron-3CDS	ENST00000456518	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000456518	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000456518	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000397174	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000397174	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000397174	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000402904	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000402904	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000402904	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000361191	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000361191	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000361191	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000397171	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000397171	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000397171	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000361705	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000361705	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000361705	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000326197	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000326197	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000326197	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000372595	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000372595	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000372595	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-3CDS	ENST00000337495	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-3CDS	ENST00000337495	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-5UTR	ENST00000337495	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-3CDS	ENST00000372596	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-3CDS	ENST00000372596	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-5UTR	ENST00000372596	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-3CDS	ENST00000372597	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-3CDS	ENST00000372597	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5UTR-5UTR	ENST00000372597	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000472037	ENST00000290795		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-3CDS	ENST00000472037	ENST00000355105		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
intron-5UTR	ENST00000472037	ENST00000479235		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SCMH1	chr1	41707731	-	GPBP1L1	chr1	46099908	-
5CDS-3UTR	ENST00000321765	ENST00000584348		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000571335		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000436810		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000542886		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000457293		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000270570		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000575023		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5CDS-5UTR	ENST00000321765	ENST00000395585		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	SPAG5	chr17	26912882	-	SLC47A1	chr17	19445706	+
5UTR-3CDS	ENST00000336308	ENST00000335762		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399655		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000480911		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399644		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000344100		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399638		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399629		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399597		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000327702		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399621		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399649		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399637		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000402845		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399591		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399641		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000347598		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399606		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399595		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399601		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399603		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399634		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000399617		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000336308	ENST00000406454		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-intron	ENST00000336308	ENST00000491104		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000335762		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399655		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000480911		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399644		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000344100		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399638		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399629		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399597		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000327702		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399621		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399649		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399637		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000402845		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399591		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399641		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000347598		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399606		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399595		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399601		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399603		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399634		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000399617		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-3CDS	ENST00000578232	ENST00000406454		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
3UTR-intron	ENST00000578232	ENST00000491104		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000335762		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399655		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000480911		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399644		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000344100		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399638		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399629		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399597		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000327702		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399621		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399649		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399637		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000402845		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399591		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399641		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000347598		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399606		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399595		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399601		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399603		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399634		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000399617		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000544210	ENST00000406454		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-intron	ENST00000544210	ENST00000491104		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000335762		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399655		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000480911		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399644		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000344100		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399638		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399629		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399597		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000327702		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399621		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399649		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399637		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000402845		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399591		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399641		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000347598		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399606		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399595		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399601		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399603		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399634		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000399617		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000394250	ENST00000406454		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-intron	ENST00000394250	ENST00000491104		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000335762		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399655		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000480911		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399644		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000344100		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399638		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399629		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399597		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000327702		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399621		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399649		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399637		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000402845		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399591		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399641		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000347598		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399606		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399595		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399601		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399603		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399634		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000399617		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-3CDS	ENST00000580611	ENST00000406454		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
5UTR-intron	ENST00000580611	ENST00000491104		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	STARD3	chr17	37793484	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000570371	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000570371	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000574744	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000574744	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000575882	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000575882	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000445275	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000445275	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000348161	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000348161	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000572405	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000572405	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000572158	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000572158	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000540336	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000540336	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
Frame-shit	ENST00000536554	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
5CDS-5UTR	ENST00000536554	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-3CDS	ENST00000575333	ENST00000317635		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
intron-5UTR	ENST00000575333	ENST00000584432		TCGA	LD	BRCA	TCGA-OL-A5RZ-01A	TOM1L1	chr17	53027487	+	TMEM11	chr17	21102153	-
3UTR-3CDS	ENST00000268251	ENST00000344836		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-3CDS	ENST00000268251	ENST00000381886		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-3CDS	ENST00000268251	ENST00000535863		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-intron	ENST00000268251	ENST00000566224		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-3CDS	ENST00000396600	ENST00000344836		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-3CDS	ENST00000396600	ENST00000381886		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-3CDS	ENST00000396600	ENST00000535863		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
3UTR-intron	ENST00000396600	ENST00000566224		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000563215	ENST00000344836		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000563215	ENST00000381886		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000563215	ENST00000535863		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-intron	ENST00000563215	ENST00000566224		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000567812	ENST00000344836		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000567812	ENST00000381886		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000567812	ENST00000535863		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-intron	ENST00000567812	ENST00000566224		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000425191	ENST00000344836		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000425191	ENST00000381886		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000425191	ENST00000535863		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-intron	ENST00000425191	ENST00000566224		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000569156	ENST00000344836		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000569156	ENST00000381886		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-3CDS	ENST00000569156	ENST00000535863		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
intron-intron	ENST00000569156	ENST00000566224		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ABAT	chr16	8878137	+	USP7	chr16	9009383	-
Frame-shit	ENST00000394919	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317168	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317168	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317168	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317168	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317168	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000545550	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000545550	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000545550	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000545550	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000545550	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000317126	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000317126	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000317126	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000317126	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
In-frame	ENST00000317126	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394915	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394915	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394915	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394915	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394915	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
intron-3CDS	ENST00000492502	ENST00000401998		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
intron-3CDS	ENST00000492502	ENST00000361114		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
intron-3CDS	ENST00000492502	ENST00000398761		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
intron-3CDS	ENST00000492502	ENST00000418483		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
intron-3CDS	ENST00000492502	ENST00000398763		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
intron-intron	ENST00000492502	ENST00000604025		TCGA	LD	BRCA	TCGA-OL-A66I-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000262367	ENST00000219478		TCGA	LD	BRCA	TCGA-OL-A66I-01A	CREBBP	chr16	3929833	-	ZNF500	chr16	4803059	-
5CDS-5UTR	ENST00000262367	ENST00000591026		TCGA	LD	BRCA	TCGA-OL-A66I-01A	CREBBP	chr16	3929833	-	ZNF500	chr16	4803059	-
5CDS-5UTR	ENST00000262367	ENST00000545009		TCGA	LD	BRCA	TCGA-OL-A66I-01A	CREBBP	chr16	3929833	-	ZNF500	chr16	4803059	-
Frame-shit	ENST00000382070	ENST00000219478		TCGA	LD	BRCA	TCGA-OL-A66I-01A	CREBBP	chr16	3929833	-	ZNF500	chr16	4803059	-
5CDS-5UTR	ENST00000382070	ENST00000591026		TCGA	LD	BRCA	TCGA-OL-A66I-01A	CREBBP	chr16	3929833	-	ZNF500	chr16	4803059	-
5CDS-5UTR	ENST00000382070	ENST00000545009		TCGA	LD	BRCA	TCGA-OL-A66I-01A	CREBBP	chr16	3929833	-	ZNF500	chr16	4803059	-
5CDS-5UTR	ENST00000398665	ENST00000528282		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000530481		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000445890		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000337057		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-intron	ENST00000398665	ENST00000530757		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000392427		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000368128		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000527411		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-intron	ENST00000398665	ENST00000524581		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000525271		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-intron	ENST00000398665	ENST00000525193		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-intron	ENST00000398665	ENST00000527659		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-5UTR	ENST00000398665	ENST00000529208		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-intron	ENST00000398665	ENST00000531410		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
5CDS-intron	ENST00000398665	ENST00000530148		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000528282		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000530481		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000445890		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000337057		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-intron	ENST00000608122	ENST00000530757		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000392427		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000368128		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000527411		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-intron	ENST00000608122	ENST00000524581		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000525271		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-intron	ENST00000608122	ENST00000525193		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-intron	ENST00000608122	ENST00000527659		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000608122	ENST00000529208		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-intron	ENST00000608122	ENST00000531410		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
intron-intron	ENST00000608122	ENST00000530148		TCGA	LD	BRCA	TCGA-OL-A66I-01A	DOT1L	chr19	2180755	+	EPB41L2	chr6	131277639	-
In-frame	ENST00000517956	ENST00000262219		TCGA	LD	BRCA	TCGA-OL-A66I-01A	FBXO32	chr8	124544138	-	ANXA13	chr8	124693599	-
Frame-shit	ENST00000517956	ENST00000419625		TCGA	LD	BRCA	TCGA-OL-A66I-01A	FBXO32	chr8	124544138	-	ANXA13	chr8	124693599	-
5CDS-intron	ENST00000517956	ENST00000519045		TCGA	LD	BRCA	TCGA-OL-A66I-01A	FBXO32	chr8	124544138	-	ANXA13	chr8	124693599	-
In-frame	ENST00000443022	ENST00000262219		TCGA	LD	BRCA	TCGA-OL-A66I-01A	FBXO32	chr8	124544138	-	ANXA13	chr8	124693599	-
Frame-shit	ENST00000443022	ENST00000419625		TCGA	LD	BRCA	TCGA-OL-A66I-01A	FBXO32	chr8	124544138	-	ANXA13	chr8	124693599	-
5CDS-intron	ENST00000443022	ENST00000519045		TCGA	LD	BRCA	TCGA-OL-A66I-01A	FBXO32	chr8	124544138	-	ANXA13	chr8	124693599	-
intron-3CDS	ENST00000361924	ENST00000443503		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3CDS	ENST00000361924	ENST00000273179		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3UTR	ENST00000361924	ENST00000310189		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3CDS	ENST00000435830	ENST00000443503		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3CDS	ENST00000435830	ENST00000273179		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3UTR	ENST00000435830	ENST00000310189		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3CDS	ENST00000444882	ENST00000443503		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3CDS	ENST00000444882	ENST00000273179		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
intron-3UTR	ENST00000444882	ENST00000310189		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
In-frame	ENST00000356847	ENST00000443503		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
In-frame	ENST00000356847	ENST00000273179		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
5CDS-3UTR	ENST00000356847	ENST00000310189		TCGA	LD	BRCA	TCGA-OL-A66I-01A	GOLGA4	chr3	37315092	+	CTDSPL	chr3	38006062	+
5CDS-intron	ENST00000260665	ENST00000540637		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
5CDS-intron	ENST00000260665	ENST00000497432		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
5CDS-intron	ENST00000260665	ENST00000264192		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
intron-intron	ENST00000409946	ENST00000540637		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
intron-intron	ENST00000409946	ENST00000497432		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
intron-intron	ENST00000409946	ENST00000264192		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
intron-intron	ENST00000409659	ENST00000540637		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
intron-intron	ENST00000409659	ENST00000497432		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
intron-intron	ENST00000409659	ENST00000264192		TCGA	LD	BRCA	TCGA-OL-A66I-01A	LRPPRC	chr2	44161329	-	CYTIP	chr2	158300518	-
In-frame	ENST00000312865	ENST00000338033		TCGA	LD	BRCA	TCGA-OL-A66I-01A	MED25	chr19	50335672	+	MAPK15	chr8	144799864	+
In-frame	ENST00000312865	ENST00000395107		TCGA	LD	BRCA	TCGA-OL-A66I-01A	MED25	chr19	50335672	+	MAPK15	chr8	144799864	+
In-frame	ENST00000312865	ENST00000395108		TCGA	LD	BRCA	TCGA-OL-A66I-01A	MED25	chr19	50335672	+	MAPK15	chr8	144799864	+
In-frame	ENST00000538643	ENST00000338033		TCGA	LD	BRCA	TCGA-OL-A66I-01A	MED25	chr19	50335672	+	MAPK15	chr8	144799864	+
In-frame	ENST00000538643	ENST00000395107		TCGA	LD	BRCA	TCGA-OL-A66I-01A	MED25	chr19	50335672	+	MAPK15	chr8	144799864	+
In-frame	ENST00000538643	ENST00000395108		TCGA	LD	BRCA	TCGA-OL-A66I-01A	MED25	chr19	50335672	+	MAPK15	chr8	144799864	+
Frame-shit	ENST00000367142	ENST00000367136		TCGA	LD	BRCA	TCGA-OL-A66I-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205817099	-
5CDS-5UTR	ENST00000367142	ENST00000460624		TCGA	LD	BRCA	TCGA-OL-A66I-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205817099	-
intron-3CDS	ENST00000464938	ENST00000367136		TCGA	LD	BRCA	TCGA-OL-A66I-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205817099	-
intron-5UTR	ENST00000464938	ENST00000460624		TCGA	LD	BRCA	TCGA-OL-A66I-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205817099	-
In-frame	ENST00000553106	ENST00000305108		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
In-frame	ENST00000553106	ENST00000397265		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000553106	ENST00000542920		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000553106	ENST00000433832		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000553106	ENST00000537416		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
Frame-shit	ENST00000307000	ENST00000305108		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
Frame-shit	ENST00000307000	ENST00000397265		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000307000	ENST00000542920		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000307000	ENST00000433832		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000307000	ENST00000537416		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000551988	ENST00000305108		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000551988	ENST00000397265		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000551988	ENST00000542920		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000551988	ENST00000433832		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
5UTR-intron	ENST00000551988	ENST00000537416		TCGA	LD	BRCA	TCGA-OL-A66I-01A	PAH	chr12	103306569	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000585748	ENST00000448276		TCGA	LD	BRCA	TCGA-OL-A66I-01A	STK11	chr19	1207202	+	SMARCD2	chr17	61914985	-
intron-3CDS	ENST00000585748	ENST00000323347		TCGA	LD	BRCA	TCGA-OL-A66I-01A	STK11	chr19	1207202	+	SMARCD2	chr17	61914985	-
intron-5UTR	ENST00000585748	ENST00000225742		TCGA	LD	BRCA	TCGA-OL-A66I-01A	STK11	chr19	1207202	+	SMARCD2	chr17	61914985	-
Frame-shit	ENST00000326873	ENST00000448276		TCGA	LD	BRCA	TCGA-OL-A66I-01A	STK11	chr19	1207202	+	SMARCD2	chr17	61914985	-
Frame-shit	ENST00000326873	ENST00000323347		TCGA	LD	BRCA	TCGA-OL-A66I-01A	STK11	chr19	1207202	+	SMARCD2	chr17	61914985	-
5CDS-5UTR	ENST00000326873	ENST00000225742		TCGA	LD	BRCA	TCGA-OL-A66I-01A	STK11	chr19	1207202	+	SMARCD2	chr17	61914985	-
In-frame	ENST00000356663	ENST00000356537		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TMEM259	chr19	1020771	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000356663	ENST00000539095		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TMEM259	chr19	1020771	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000356663	ENST00000522915		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TMEM259	chr19	1020771	-	CCDC25	chr8	27610104	-
In-frame	ENST00000333175	ENST00000356537		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TMEM259	chr19	1020771	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000333175	ENST00000539095		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TMEM259	chr19	1020771	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000333175	ENST00000522915		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TMEM259	chr19	1020771	-	CCDC25	chr8	27610104	-
5CDS-5UTR	ENST00000361421	ENST00000355360		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TOX	chr8	59851861	-	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000361421	ENST00000329291		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TOX	chr8	59851861	-	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000361421	ENST00000539153		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TOX	chr8	59851861	-	PGBD2	chr1	249208015	+
5CDS-3UTR	ENST00000361421	ENST00000462488		TCGA	LD	BRCA	TCGA-OL-A66I-01A	TOX	chr8	59851861	-	PGBD2	chr1	249208015	+
intron-3CDS	ENST00000347370	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000347370	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-intron	ENST00000347370	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
Frame-shit	ENST00000349431	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
Frame-shit	ENST00000349431	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5CDS-intron	ENST00000349431	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000339385	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000339385	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-intron	ENST00000339385	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5UTR-3CDS	ENST00000348298	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5UTR-3CDS	ENST00000348298	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5UTR-intron	ENST00000348298	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000400929	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000400929	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-intron	ENST00000400929	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
Frame-shit	ENST00000360466	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
Frame-shit	ENST00000360466	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5CDS-intron	ENST00000360466	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
Frame-shit	ENST00000400930	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
Frame-shit	ENST00000400930	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5CDS-intron	ENST00000400930	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000491779	ENST00000354700		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-3CDS	ENST00000491779	ENST00000353662		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
intron-intron	ENST00000491779	ENST00000379037		TCGA	LD	BRCA	TCGA-OL-A66I-01A	UBE2J2	chr1	1203242	-	ACAP3	chr1	1229579	-
5CDS-5UTR	ENST00000344836	ENST00000564869		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
5CDS-intron	ENST00000344836	ENST00000333050		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
5CDS-5UTR	ENST00000381886	ENST00000564869		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
5CDS-intron	ENST00000381886	ENST00000333050		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
5CDS-5UTR	ENST00000535863	ENST00000564869		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
5CDS-intron	ENST00000535863	ENST00000333050		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
intron-5UTR	ENST00000566224	ENST00000564869		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
intron-intron	ENST00000566224	ENST00000333050		TCGA	LD	BRCA	TCGA-OL-A66I-01A	USP7	chr16	8999044	-	TMEM186	chr16	8875301	-
Frame-shit	ENST00000294053	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000294053	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000294053	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000294053	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000538039	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000538039	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000538039	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000538039	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
In-frame	ENST00000437826	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
In-frame	ENST00000437826	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000437826	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000437826	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000340729	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000340729	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000340729	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000340729	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-3CDS	ENST00000543042	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-3CDS	ENST00000543042	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-intron	ENST00000543042	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-intron	ENST00000543042	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000445069	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
Frame-shit	ENST00000445069	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000445069	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5CDS-intron	ENST00000445069	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-3CDS	ENST00000538021	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-3CDS	ENST00000538021	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-intron	ENST00000538021	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-intron	ENST00000538021	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000542555	ENST00000393877		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000542555	ENST00000308022		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000542555	ENST00000541059		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000542555	ENST00000452789		TCGA	LD	BRCA	TCGA-OL-A66J-01A	CLPB	chr11	72141356	-	TMEM134	chr11	67235563	-
intron-5UTR	ENST00000581396	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000581396	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000581396	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000581396	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000581396	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-intron	ENST00000581396	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000379504	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000379504	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000379504	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000379504	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000379504	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000379504	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000318094	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000318094	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000318094	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000318094	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000318094	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000318094	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000395739	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000395739	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000395739	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000395739	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000395739	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000395739	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000535933	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000535933	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000535933	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000535933	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000535933	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000535933	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000540946	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000540946	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000540946	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000540946	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-5UTR	ENST00000540946	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
5CDS-intron	ENST00000540946	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000542206	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000542206	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000542206	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000542206	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000542206	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-intron	ENST00000542206	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000478943	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000478943	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000478943	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000478943	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000478943	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-intron	ENST00000478943	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000577517	ENST00000395782		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000577517	ENST00000395783		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000577517	ENST00000435340		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000577517	ENST00000255389		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-5UTR	ENST00000577517	ENST00000395781		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-intron	ENST00000577517	ENST00000484838		TCGA	LD	BRCA	TCGA-OL-A66O-01A	TOM1L2	chr17	17796975	-	PEMT	chr17	17480341	-
intron-3CDS	ENST00000257765	ENST00000370363		TCGA	LD	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	73972657	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000257765	ENST00000370359		TCGA	LD	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	73972657	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000370384	ENST00000370363		TCGA	LD	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	73972657	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000370384	ENST00000370359		TCGA	LD	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	73972657	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000484801	ENST00000370363		TCGA	LD	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	73972657	-	OOEP	chr6	74079108	-
intron-3CDS	ENST00000484801	ENST00000370359		TCGA	LD	BRCA	TCGA-OL-A66P-01A	KHDC1	chr6	73972657	-	OOEP	chr6	74079108	-
3UTR-3CDS	ENST00000536939	ENST00000341307		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-3CDS	ENST00000536939	ENST00000356000		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-intron	ENST00000536939	ENST00000538995		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-intron	ENST00000536939	ENST00000377819		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-intron	ENST00000536939	ENST00000339997		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-intron	ENST00000536939	ENST00000540798		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-intron	ENST00000536939	ENST00000537981		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
3UTR-intron	ENST00000536939	ENST00000354497		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000456907	ENST00000341307		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000456907	ENST00000356000		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-intron	ENST00000456907	ENST00000538995		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-intron	ENST00000456907	ENST00000377819		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-intron	ENST00000456907	ENST00000339997		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-intron	ENST00000456907	ENST00000540798		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-intron	ENST00000456907	ENST00000537981		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
intron-intron	ENST00000456907	ENST00000354497		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000377793	ENST00000341307		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000377793	ENST00000356000		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377793	ENST00000538995		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377793	ENST00000377819		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377793	ENST00000339997		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377793	ENST00000540798		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377793	ENST00000537981		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377793	ENST00000354497		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000539656	ENST00000341307		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000539656	ENST00000356000		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000539656	ENST00000538995		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000539656	ENST00000377819		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000539656	ENST00000339997		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000539656	ENST00000540798		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000539656	ENST00000537981		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000539656	ENST00000354497		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000542163	ENST00000341307		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000542163	ENST00000356000		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000542163	ENST00000538995		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000542163	ENST00000377819		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000542163	ENST00000339997		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000542163	ENST00000540798		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000542163	ENST00000537981		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000542163	ENST00000354497		TCGA	LD	BRCA	TCGA-OL-A66P-01A	NAA40	chr11	63714475	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000359314	ENST00000397457		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	CD2AP	chr6	47522502	+	BLOC1S5	chr6	8016061	-
Frame-shit	ENST00000359314	ENST00000543936		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	CD2AP	chr6	47522502	+	BLOC1S5	chr6	8016061	-
5CDS-5UTR	ENST00000359314	ENST00000475998		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	CD2AP	chr6	47522502	+	BLOC1S5	chr6	8016061	-
intron-3CDS	ENST00000486693	ENST00000397457		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	CD2AP	chr6	47522502	+	BLOC1S5	chr6	8016061	-
intron-3CDS	ENST00000486693	ENST00000543936		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	CD2AP	chr6	47522502	+	BLOC1S5	chr6	8016061	-
intron-5UTR	ENST00000486693	ENST00000475998		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	CD2AP	chr6	47522502	+	BLOC1S5	chr6	8016061	-
5CDS-5UTR	ENST00000416247	ENST00000414305		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	SMIM13	chr6	11094622	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000416247	ENST00000543135		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	SMIM13	chr6	11094622	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000416247	ENST00000427148		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	SMIM13	chr6	11094622	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000416247	ENST00000357639		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	SMIM13	chr6	11094622	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000416247	ENST00000358229		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	SMIM13	chr6	11094622	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000416247	ENST00000470930		TCGA	LD	BRCA	TCGA-OL-A6VO-01A	SMIM13	chr6	11094622	+	ENPP3	chr6	131958375	+
In-frame	ENST00000441714	ENST00000256366		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
5CDS-5UTR	ENST00000441714	ENST00000554216		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
Frame-shit	ENST00000345046	ENST00000256366		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
5CDS-5UTR	ENST00000345046	ENST00000554216		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
In-frame	ENST00000458587	ENST00000256366		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
5CDS-5UTR	ENST00000458587	ENST00000554216		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
intron-3CDS	ENST00000468947	ENST00000256366		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
intron-5UTR	ENST00000468947	ENST00000554216		TCGA	LD	BRCA	TCGA-OL-A97C-01A	BCAP31	chrX	152969414	-	SYNJ2BP	chr14	70842488	-
In-frame	ENST00000336665	ENST00000521689		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000336665	ENST00000254898		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000336665	ENST00000524308		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000336665	ENST00000522025		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000336665	ENST00000520016		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000336665	ENST00000518238		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000304032	ENST00000521689		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000304032	ENST00000254898		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000304032	ENST00000524308		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000304032	ENST00000522025		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000304032	ENST00000520016		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000304032	ENST00000518238		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000409538	ENST00000521689		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000409538	ENST00000254898		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000409538	ENST00000524308		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000409538	ENST00000522025		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000409538	ENST00000520016		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000409538	ENST00000518238		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000428334	ENST00000521689		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000428334	ENST00000254898		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
In-frame	ENST00000428334	ENST00000524308		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000428334	ENST00000522025		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000428334	ENST00000520016		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
5CDS-intron	ENST00000428334	ENST00000518238		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-3CDS	ENST00000409457	ENST00000521689		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-3CDS	ENST00000409457	ENST00000254898		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-3CDS	ENST00000409457	ENST00000524308		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-intron	ENST00000409457	ENST00000522025		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-intron	ENST00000409457	ENST00000520016		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-intron	ENST00000409457	ENST00000518238		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	AGAP1	chr2	236877267	+	MATN2	chr8	98954005	+
intron-3CDS	ENST00000346329	ENST00000298229		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000346329	ENST00000541756		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000346329	ENST00000538751		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000301843	ENST00000298229		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000301843	ENST00000541756		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000301843	ENST00000538751		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000527622	ENST00000298229		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000527622	ENST00000541756		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000527622	ENST00000538751		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000376561	ENST00000298229		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000376561	ENST00000541756		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000376561	ENST00000538751		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000538675	ENST00000298229		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000538675	ENST00000541756		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
intron-3CDS	ENST00000538675	ENST00000538751		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	CTTN	chr11	70279907	+	INPPL1	chr11	71943775	+
5CDS-5UTR	ENST00000202028	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000202028	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-3UTR	ENST00000202028	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000202028	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373950	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373950	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-3UTR	ENST00000373950	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373950	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000441639	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000441639	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-3UTR	ENST00000441639	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000441639	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373946	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373946	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-3UTR	ENST00000373946	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373946	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000338074	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000338074	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-3UTR	ENST00000338074	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000338074	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373941	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373941	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-3UTR	ENST00000373941	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000373941	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
intron-5UTR	ENST00000479336	ENST00000397527		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
intron-5UTR	ENST00000479336	ENST00000342580		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
intron-3UTR	ENST00000479336	ENST00000476146		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
intron-5UTR	ENST00000479336	ENST00000397524		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	EPB41L1	chr20	34785963	+	CEP250	chr20	34046125	+
5CDS-5UTR	ENST00000285274	ENST00000541285		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	ZNF286B	chr17	18584054	-	ALKBH5	chr17	18098269	+
5CDS-5UTR	ENST00000285274	ENST00000399138		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	ZNF286B	chr17	18584054	-	ALKBH5	chr17	18098269	+
5CDS-5UTR	ENST00000545289	ENST00000541285		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	ZNF286B	chr17	18584054	-	ALKBH5	chr17	18098269	+
5CDS-5UTR	ENST00000545289	ENST00000399138		TCGA	LD	BRCA	TCGA-PE-A5DC-01A	ZNF286B	chr17	18584054	-	ALKBH5	chr17	18098269	+
Frame-shit	ENST00000378106	ENST00000217246		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
Frame-shit	ENST00000378106	ENST00000310348		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378106	ENST00000464883		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000378106	ENST00000402914		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378106	ENST00000378058		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378106	ENST00000407045		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
Frame-shit	ENST00000463598	ENST00000217246		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
Frame-shit	ENST00000463598	ENST00000310348		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000463598	ENST00000464883		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000463598	ENST00000402914		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000463598	ENST00000378058		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000463598	ENST00000407045		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
3UTR-3CDS	ENST00000475968	ENST00000217246		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
3UTR-3CDS	ENST00000475968	ENST00000310348		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
3UTR-intron	ENST00000475968	ENST00000464883		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
3UTR-5UTR	ENST00000475968	ENST00000402914		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
3UTR-intron	ENST00000475968	ENST00000378058		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
3UTR-intron	ENST00000475968	ENST00000407045		TCGA	LD	BRCA	TCGA-PL-A8LX-01A	NDUFAF5	chr20	13789548	+	MACROD2	chr20	15843390	+
Frame-shit	ENST00000371429	ENST00000371399		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
In-frame	ENST00000371429	ENST00000072644		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
In-frame	ENST00000371429	ENST00000539954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5CDS-intron	ENST00000371429	ENST00000469457		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
In-frame	ENST00000540001	ENST00000371399		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000540001	ENST00000072644		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000540001	ENST00000539954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5CDS-intron	ENST00000540001	ENST00000469457		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000537333	ENST00000371399		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000537333	ENST00000072644		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000537333	ENST00000539954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-intron	ENST00000537333	ENST00000469457		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
In-frame	ENST00000234725	ENST00000371399		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000234725	ENST00000072644		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000234725	ENST00000539954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5CDS-intron	ENST00000234725	ENST00000469457		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000480952	ENST00000371399		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000480952	ENST00000072644		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000480952	ENST00000539954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-intron	ENST00000480952	ENST00000469457		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	NDC1	chr1	54291471	-	YIPF1	chr1	54325826	-
5UTR-3CDS	ENST00000531428	ENST00000531066		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5UTR-3CDS	ENST00000531428	ENST00000355661		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5UTR-3CDS	ENST00000531428	ENST00000448080		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5UTR-intron	ENST00000531428	ENST00000532079		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5UTR-intron	ENST00000531428	ENST00000332954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000265970	ENST00000531066		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000265970	ENST00000355661		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000265970	ENST00000448080		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5CDS-intron	ENST00000265970	ENST00000532079		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5CDS-intron	ENST00000265970	ENST00000332954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000540361	ENST00000531066		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000540361	ENST00000355661		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000540361	ENST00000448080		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5CDS-intron	ENST00000540361	ENST00000532079		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
5CDS-intron	ENST00000540361	ENST00000332954		TCGA	LD	BRCA	TCGA-PL-A8LZ-01A	PIK3C2A	chr11	17126716	-	PLEKHA7	chr11	16892729	-
Frame-shit	ENST00000451813	ENST00000341197		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000451813	ENST00000423191		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000451813	ENST00000372999		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000451813	ENST00000358131		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
5CDS-3UTR	ENST00000451813	ENST00000435864		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000252015	ENST00000341197		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000252015	ENST00000423191		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000252015	ENST00000372999		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000252015	ENST00000358131		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
5CDS-3UTR	ENST00000252015	ENST00000435864		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000539834	ENST00000341197		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000539834	ENST00000423191		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000539834	ENST00000372999		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000539834	ENST00000358131		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
5CDS-3UTR	ENST00000539834	ENST00000435864		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000432634	ENST00000341197		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000432634	ENST00000423191		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000432634	ENST00000372999		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
Frame-shit	ENST00000432634	ENST00000358131		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
5CDS-3UTR	ENST00000432634	ENST00000435864		TCGA	LD	BRCA	TCGA-S3-A6ZF-01A	TRPC4AP	chr20	33597990	-	TOX2	chr20	42694352	+
5UTR-3CDS	ENST00000471642	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000471642	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000471642	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000471642	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000471642	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000471642	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000471642	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000368336	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000368336	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000368336	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000368336	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000368336	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000368336	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000368336	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000343043	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000343043	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000343043	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000343043	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000343043	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000343043	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000343043	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-3CDS	ENST00000496863	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-3CDS	ENST00000496863	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-3CDS	ENST00000496863	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-3CDS	ENST00000496863	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-3CDS	ENST00000496863	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-intron	ENST00000496863	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
3UTR-intron	ENST00000496863	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000535183	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000535183	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000535183	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000535183	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000535183	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000535183	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000535183	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000421487	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000421487	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000421487	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000421487	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000421487	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000421487	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000421487	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000465375	ENST00000284548		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000465375	ENST00000570156		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000465375	ENST00000366709		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000465375	ENST00000422127		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-3CDS	ENST00000465375	ENST00000366707		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000465375	ENST00000359599		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
5UTR-intron	ENST00000465375	ENST00000602685		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	DAP3	chr1	155658965	+	OBSCN	chr1	228520561	+
Frame-shit	ENST00000368884	ENST00000368069		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	PSMD4	chr1	151227284	+	COPA	chr1	160278966	-
Frame-shit	ENST00000368884	ENST00000241704		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	PSMD4	chr1	151227284	+	COPA	chr1	160278966	-
Frame-shit	ENST00000368881	ENST00000368069		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	PSMD4	chr1	151227284	+	COPA	chr1	160278966	-
Frame-shit	ENST00000368881	ENST00000241704		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	PSMD4	chr1	151227284	+	COPA	chr1	160278966	-
intron-3CDS	ENST00000469786	ENST00000368069		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	PSMD4	chr1	151227284	+	COPA	chr1	160278966	-
intron-3CDS	ENST00000469786	ENST00000241704		TCGA	LD	BRCA	TCGA-S3-A6ZG-01A	PSMD4	chr1	151227284	+	COPA	chr1	160278966	-
5UTR-3CDS	ENST00000349945	ENST00000561500		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5UTR-3CDS	ENST00000349945	ENST00000379047		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5UTR-3CDS	ENST00000349945	ENST00000320623		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5UTR-3CDS	ENST00000349945	ENST00000379046		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5UTR-3CDS	ENST00000349945	ENST00000439109		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5UTR-5UTR	ENST00000349945	ENST00000564043		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000432919	ENST00000561500		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000432919	ENST00000379047		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000432919	ENST00000320623		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000432919	ENST00000379046		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000432919	ENST00000439109		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5CDS-5UTR	ENST00000432919	ENST00000564043		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000354436	ENST00000561500		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000354436	ENST00000379047		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000354436	ENST00000320623		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000354436	ENST00000379046		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000354436	ENST00000439109		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-5UTR	ENST00000354436	ENST00000564043		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000567239	ENST00000561500		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000567239	ENST00000379047		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000567239	ENST00000320623		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000567239	ENST00000379046		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
In-frame	ENST00000567239	ENST00000439109		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5CDS-5UTR	ENST00000567239	ENST00000564043		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000393742	ENST00000561500		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000393742	ENST00000379047		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000393742	ENST00000320623		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000393742	ENST00000379046		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000393742	ENST00000439109		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-5UTR	ENST00000393742	ENST00000564043		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000566899	ENST00000561500		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000566899	ENST00000379047		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000566899	ENST00000320623		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000566899	ENST00000379046		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-3CDS	ENST00000566899	ENST00000439109		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
intron-5UTR	ENST00000566899	ENST00000564043		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	NFAT5	chr16	69602451	+	NQO1	chr16	69752437	-
5UTR-3CDS	ENST00000393958	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393958	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393958	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393958	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393958	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000393958	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000393958	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393960	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393960	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393960	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393960	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393960	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000393960	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000393960	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000355677	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000355677	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000355677	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000355677	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000355677	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000355677	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000355677	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000524491	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000524491	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000524491	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000524491	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000524491	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000524491	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-intron	ENST00000524491	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000529047	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000529047	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000529047	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000529047	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000529047	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-intron	ENST00000529047	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-intron	ENST00000529047	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000393955	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000393955	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000393955	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000393955	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000393955	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-intron	ENST00000393955	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-intron	ENST00000393955	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000528224	ENST00000355303		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000528224	ENST00000398543		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000528224	ENST00000538023		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000528224	ENST00000316296		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-3CDS	ENST00000528224	ENST00000530676		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-intron	ENST00000528224	ENST00000531349		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
intron-intron	ENST00000528224	ENST00000525494		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66725793	-	ANO1	chr11	69951840	+
5UTR-3CDS	ENST00000393958	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393958	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-3CDS	ENST00000393960	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000393960	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-3CDS	ENST00000355677	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000355677	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-3CDS	ENST00000524491	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
5UTR-intron	ENST00000524491	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-3CDS	ENST00000529047	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000529047	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-3CDS	ENST00000393955	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000393955	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-3CDS	ENST00000528224	ENST00000393799		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000530427		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000393800		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000534534		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000524845		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000265637		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000524904		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000393801		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000265636		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000529710		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
intron-intron	ENST00000528224	ENST00000527403		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	PC	chr11	66719901	-	PPP6R3	chr11	68370810	+
In-frame	ENST00000287263	ENST00000287272		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000287263	ENST00000453357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000287263	ENST00000404895		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000287263	ENST00000420357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000287263	ENST00000416672		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000287263	ENST00000449677		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000330843	ENST00000287272		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000330843	ENST00000453357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000330843	ENST00000404895		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000330843	ENST00000420357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000330843	ENST00000416672		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000330843	ENST00000449677		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000522727	ENST00000287272		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000522727	ENST00000453357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000522727	ENST00000404895		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000522727	ENST00000420357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000522727	ENST00000416672		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000522727	ENST00000449677		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
intron-3CDS	ENST00000523182	ENST00000287272		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
intron-3CDS	ENST00000523182	ENST00000453357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
intron-3CDS	ENST00000523182	ENST00000404895		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
intron-3CDS	ENST00000523182	ENST00000420357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
intron-3CDS	ENST00000523182	ENST00000416672		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
intron-3CDS	ENST00000523182	ENST00000449677		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000524118	ENST00000287272		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000524118	ENST00000453357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000524118	ENST00000404895		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000524118	ENST00000420357		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000524118	ENST00000416672		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
In-frame	ENST00000524118	ENST00000449677		TCGA	LD	BRCA	TCGA-S3-A6ZH-01A	RAB11FIP1	chr8	37734627	-	UNC5D	chr8	35647877	+
Frame-shit	ENST00000359543	ENST00000261658		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
Frame-shit	ENST00000359543	ENST00000563971		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
Frame-shit	ENST00000359543	ENST00000426842		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
5CDS-intron	ENST00000359543	ENST00000563082		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
intron-3CDS	ENST00000566033	ENST00000261658		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
intron-3CDS	ENST00000566033	ENST00000563971		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
intron-3CDS	ENST00000566033	ENST00000426842		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
intron-intron	ENST00000566033	ENST00000563082		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
Frame-shit	ENST00000536829	ENST00000261658		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
Frame-shit	ENST00000536829	ENST00000563971		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
Frame-shit	ENST00000536829	ENST00000426842		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
5CDS-intron	ENST00000536829	ENST00000563082		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	EMP2	chr16	10631785	-	BFAR	chr16	14755749	+
In-frame	ENST00000300571	ENST00000444310		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	GPRC5B	chr16	19873159	-	C16orf96	chr16	4621562	+
intron-3CDS	ENST00000569102	ENST00000444310		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	GPRC5B	chr16	19873159	-	C16orf96	chr16	4621562	+
In-frame	ENST00000535671	ENST00000444310		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	GPRC5B	chr16	19873159	-	C16orf96	chr16	4621562	+
Frame-shit	ENST00000569479	ENST00000444310		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	GPRC5B	chr16	19873159	-	C16orf96	chr16	4621562	+
In-frame	ENST00000537135	ENST00000444310		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	GPRC5B	chr16	19873159	-	C16orf96	chr16	4621562	+
Frame-shit	ENST00000569847	ENST00000444310		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	GPRC5B	chr16	19873159	-	C16orf96	chr16	4621562	+
In-frame	ENST00000399336	ENST00000204517		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	NOMO3	chr16	16350015	+	TFAP4	chr16	4312702	-
In-frame	ENST00000263012	ENST00000204517		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	NOMO3	chr16	16350015	+	TFAP4	chr16	4312702	-
In-frame	ENST00000538468	ENST00000204517		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	NOMO3	chr16	16350015	+	TFAP4	chr16	4312702	-
intron-3CDS	ENST00000572932	ENST00000204517		TCGA	LD	BRCA	TCGA-S3-AA0Z-01A	NOMO3	chr16	16350015	+	TFAP4	chr16	4312702	-
Frame-shit	ENST00000540306	ENST00000196169		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000540306	ENST00000377894		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000540306	ENST00000535286		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000540306	ENST00000377881		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
5CDS-intron	ENST00000540306	ENST00000463109		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000262415	ENST00000196169		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000262415	ENST00000377894		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000262415	ENST00000535286		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
Frame-shit	ENST00000262415	ENST00000377881		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
5CDS-intron	ENST00000262415	ENST00000463109		TCGA	LD	BRCA	TCGA-S3-AA10-01A	DHX8	chr17	41599594	+	TDRD3	chr13	61068569	+
In-frame	ENST00000472531	ENST00000366508		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000472531	ENST00000326225		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-5UTR	ENST00000472531	ENST00000391829		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-intron	ENST00000472531	ENST00000470300		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000491356	ENST00000366508		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000491356	ENST00000326225		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-5UTR	ENST00000491356	ENST00000391829		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-intron	ENST00000491356	ENST00000470300		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000340684	ENST00000366508		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000340684	ENST00000326225		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-5UTR	ENST00000340684	ENST00000391829		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-intron	ENST00000340684	ENST00000470300		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000543802	ENST00000366508		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
In-frame	ENST00000543802	ENST00000326225		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-5UTR	ENST00000543802	ENST00000391829		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5CDS-intron	ENST00000543802	ENST00000470300		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5UTR-3CDS	ENST00000491848	ENST00000366508		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5UTR-3CDS	ENST00000491848	ENST00000326225		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5UTR-5UTR	ENST00000491848	ENST00000391829		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
5UTR-intron	ENST00000491848	ENST00000470300		TCGA	LD	BRCA	TCGA-S3-AA10-01A	ZNF124	chr1	247322308	-	AHCTF1	chr1	247081679	-
intron-3CDS	ENST00000342228	ENST00000315769		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000342228	ENST00000297737		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-intron	ENST00000342228	ENST00000523823		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000520262	ENST00000315769		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000520262	ENST00000297737		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-intron	ENST00000520262	ENST00000523823		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000520179	ENST00000315769		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000520179	ENST00000297737		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-intron	ENST00000520179	ENST00000523823		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000523340	ENST00000315769		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-3CDS	ENST00000523340	ENST00000297737		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
intron-intron	ENST00000523340	ENST00000523823		TCGA	LD	BRCA	TCGA-S3-AA12-01A	SLC20A2	chr8	42396681	-	ZMAT4	chr8	40625249	-
3UTR-intron	ENST00000525037	ENST00000247271		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
3UTR-5UTR	ENST00000525037	ENST00000584094		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-intron	ENST00000530173	ENST00000247271		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-5UTR	ENST00000530173	ENST00000584094		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-intron	ENST00000322157	ENST00000247271		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-5UTR	ENST00000322157	ENST00000584094		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-intron	ENST00000544660	ENST00000247271		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-5UTR	ENST00000544660	ENST00000584094		TCGA	LD	BRCA	TCGA-S3-AA14-01A	NPEPPS	chr17	45646860	+	OMG	chr17	29599783	-
5CDS-5UTR	ENST00000524419	ENST00000600104		TCGA	LD	BRCA	TCGA-S3-AA17-01A	LDLRAD3	chr11	36120011	+	KLKP1	chr19	51391130	-
5CDS-5UTR	ENST00000528989	ENST00000600104		TCGA	LD	BRCA	TCGA-S3-AA17-01A	LDLRAD3	chr11	36120011	+	KLKP1	chr19	51391130	-
5CDS-5UTR	ENST00000315571	ENST00000600104		TCGA	LD	BRCA	TCGA-S3-AA17-01A	LDLRAD3	chr11	36120011	+	KLKP1	chr19	51391130	-
intron-5UTR	ENST00000529759	ENST00000600104		TCGA	LD	BRCA	TCGA-S3-AA17-01A	LDLRAD3	chr11	36120011	+	KLKP1	chr19	51391130	-
5CDS-intron	ENST00000083182	ENST00000589046		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
5CDS-intron	ENST00000083182	ENST00000420450		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
5CDS-intron	ENST00000083182	ENST00000526123		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
5CDS-3UTR	ENST00000083182	ENST00000432005		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
5CDS-intron	ENST00000083182	ENST00000529555		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
intron-intron	ENST00000592995	ENST00000589046		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
intron-intron	ENST00000592995	ENST00000420450		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
intron-intron	ENST00000592995	ENST00000526123		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
intron-3UTR	ENST00000592995	ENST00000432005		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
intron-intron	ENST00000592995	ENST00000529555		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	APPBP2	chr17	58556509	-	ZNF345	chr19	37383720	+
In-frame	ENST00000589222	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000589222	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000589222	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000589222	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000407086	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000407086	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000407086	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000407086	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000390652	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000390652	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000390652	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000390652	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000408905	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000408905	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000408905	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000408905	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000588462	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000588462	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000588462	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000588462	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000585744	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000585744	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000585744	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000585744	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000588874	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
In-frame	ENST00000588874	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000588874	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5CDS-intron	ENST00000588874	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
intron-3CDS	ENST00000585812	ENST00000357410		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
intron-3CDS	ENST00000585812	ENST00000327619		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
intron-intron	ENST00000585812	ENST00000497428		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
intron-intron	ENST00000585812	ENST00000317304		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	BCAS3	chr17	59118253	+	EYA2	chr20	45644820	+
5UTR-3CDS	ENST00000394389	ENST00000184956		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
5UTR-3CDS	ENST00000394389	ENST00000585976		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
5UTR-intron	ENST00000394389	ENST00000585712		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
intron-3CDS	ENST00000394386	ENST00000184956		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
intron-3CDS	ENST00000394386	ENST00000585976		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
intron-intron	ENST00000394386	ENST00000585712		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
intron-3CDS	ENST00000487847	ENST00000184956		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
intron-3CDS	ENST00000487847	ENST00000585976		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
intron-intron	ENST00000487847	ENST00000585712		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	DUSP14	chr17	35850058	+	HEATR6	chr17	58121496	-
5CDS-5UTR	ENST00000261844	ENST00000372621		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5CDS-intron	ENST00000261844	ENST00000541520		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5CDS-3UTR	ENST00000261844	ENST00000475060		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5CDS-3UTR	ENST00000261844	ENST00000543104		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5CDS-5UTR	ENST00000261844	ENST00000372616		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5UTR-5UTR	ENST00000562351	ENST00000372621		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5UTR-intron	ENST00000562351	ENST00000541520		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5UTR-3UTR	ENST00000562351	ENST00000475060		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5UTR-3UTR	ENST00000562351	ENST00000543104		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
5UTR-5UTR	ENST00000562351	ENST00000372616		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
intron-5UTR	ENST00000546305	ENST00000372621		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
intron-intron	ENST00000546305	ENST00000541520		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
intron-3UTR	ENST00000546305	ENST00000475060		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
intron-3UTR	ENST00000546305	ENST00000543104		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
intron-5UTR	ENST00000546305	ENST00000372616		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FAM214A	chr15	52970203	-	CTPS1	chr1	41448950	+
intron-intron	ENST00000583610	ENST00000549804		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000547292		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-3UTR	ENST00000583610	ENST00000424208		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000452731		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000554726		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000551631		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000459433		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000551361		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000553134		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000551938		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000384733		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000551077		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000546682		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000553108		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000384430		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000516123		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000553149		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000441592		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000365306		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000414175		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000456576		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000363358		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000424333		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000450809		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-3UTR	ENST00000583610	ENST00000453082		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000365067		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000390982		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000583610	ENST00000580438		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000549804		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000547292		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-3UTR	ENST00000394294	ENST00000424208		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000452731		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000554726		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000551631		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000459433		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000551361		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000553134		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000551938		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000384733		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000551077		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000546682		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000553108		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000384430		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000516123		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000553149		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000441592		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000365306		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000414175		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000456576		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000363358		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000424333		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000450809		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-3UTR	ENST00000394294	ENST00000453082		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000365067		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000390982		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000394294	ENST00000580438		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000549804		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000547292		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-3UTR	ENST00000264658	ENST00000424208		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000452731		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000554726		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000551631		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000459433		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000551361		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000553134		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000551938		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000384733		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000551077		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000546682		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000553108		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000384430		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000516123		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000553149		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000441592		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000365306		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000414175		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000456576		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000363358		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000424333		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000450809		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-3UTR	ENST00000264658	ENST00000453082		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000365067		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000390982		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
intron-intron	ENST00000264658	ENST00000580438		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000549804		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000547292		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-3UTR	ENST00000577399	ENST00000424208		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000452731		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000554726		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000551631		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000459433		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000551361		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000553134		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000551938		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000384733		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000551077		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000546682		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000553108		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000384430		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000516123		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000553149		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000441592		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000365306		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000414175		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000456576		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000363358		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000424333		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000450809		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-3UTR	ENST00000577399	ENST00000453082		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000365067		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000390982		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000577399	ENST00000580438		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	FBXL20	chr17	37558426	-	SNHG14	chr15	25467306	+
5CDS-intron	ENST00000444766	ENST00000353139		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000360679		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000394406		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000335166		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000416895		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000361253		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000588142		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000444766	ENST00000589665		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000353139		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000360679		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000394406		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000335166		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000416895		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000361253		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000588142		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
5CDS-intron	ENST00000251334	ENST00000589665		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	INTS2	chr17	59996761	-	ACACA	chr17	35726430	-
In-frame	ENST00000215071	ENST00000253055		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	PSMD8	chr19	38867094	+	MAP3K10	chr19	40710392	+
5CDS-3UTR	ENST00000215071	ENST00000593906		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	PSMD8	chr19	38867094	+	MAP3K10	chr19	40710392	+
In-frame	ENST00000602911	ENST00000253055		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	PSMD8	chr19	38867094	+	MAP3K10	chr19	40710392	+
5CDS-3UTR	ENST00000602911	ENST00000593906		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	PSMD8	chr19	38867094	+	MAP3K10	chr19	40710392	+
In-frame	ENST00000592035	ENST00000253055		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	PSMD8	chr19	38867094	+	MAP3K10	chr19	40710392	+
5CDS-3UTR	ENST00000592035	ENST00000593906		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	PSMD8	chr19	38867094	+	MAP3K10	chr19	40710392	+
intron-3CDS	ENST00000549804	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000549804	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000549804	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000549804	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000549804	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000547292	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000547292	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000547292	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000547292	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000547292	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000424208	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424208	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424208	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424208	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424208	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
3UTR-3CDS	ENST00000452731	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
3UTR-intron	ENST00000452731	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
3UTR-intron	ENST00000452731	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
3UTR-intron	ENST00000452731	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
3UTR-intron	ENST00000452731	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000554726	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000554726	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000554726	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000554726	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000554726	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000551631	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551631	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551631	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551631	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551631	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000459433	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000459433	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000459433	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000459433	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000459433	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000551361	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551361	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551361	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551361	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551361	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000553134	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553134	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553134	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553134	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553134	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000551938	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551938	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551938	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551938	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551938	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000384733	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384733	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384733	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384733	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384733	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000551077	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551077	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551077	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551077	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000551077	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000546682	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000546682	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000546682	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000546682	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000546682	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000553108	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553108	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553108	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553108	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553108	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000384430	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384430	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384430	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384430	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000384430	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000516123	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000516123	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000516123	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000516123	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000516123	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000553149	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553149	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553149	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553149	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000553149	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000441592	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000441592	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000441592	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000441592	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000441592	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000365306	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365306	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365306	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365306	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365306	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000414175	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000414175	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000414175	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000414175	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000414175	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000456576	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000456576	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000456576	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000456576	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000456576	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000363358	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000363358	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000363358	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000363358	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000363358	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000424333	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424333	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424333	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424333	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000424333	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000450809	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000450809	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000450809	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000450809	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000450809	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000453082	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000453082	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000453082	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000453082	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000453082	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000365067	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365067	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365067	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365067	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000365067	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000390982	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000390982	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000390982	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000390982	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000390982	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-3CDS	ENST00000580438	ENST00000336308		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000580438	ENST00000578232		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000580438	ENST00000544210		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000580438	ENST00000394250		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
intron-intron	ENST00000580438	ENST00000580611		TCGA	LD	BRCA	TCGA-UL-AAZ6-01A	SNHG14	chr15	25497480	+	STARD3	chr17	37816464	+
In-frame	ENST00000584601	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	LD	BRCA	TCGA-UU-A93S-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
5CDS-5UTR	ENST00000393066	ENST00000397861		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-intron	ENST00000393066	ENST00000397862		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000393066	ENST00000575658		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000393066	ENST00000487705		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000262294	ENST00000397861		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-intron	ENST00000262294	ENST00000397862		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000262294	ENST00000575658		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000262294	ENST00000487705		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000376149	ENST00000397861		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-intron	ENST00000376149	ENST00000397862		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000376149	ENST00000575658		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000376149	ENST00000487705		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000393065	ENST00000397861		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-intron	ENST00000393065	ENST00000397862		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000393065	ENST00000575658		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
5CDS-5UTR	ENST00000393065	ENST00000487705		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
intron-5UTR	ENST00000584889	ENST00000397861		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
intron-intron	ENST00000584889	ENST00000397862		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
intron-5UTR	ENST00000584889	ENST00000575658		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
intron-5UTR	ENST00000584889	ENST00000487705		TCGA	LD	BRCA	TCGA-UU-A93S-01A	TRIM37	chr17	57119174	-	C17orf67	chr17	54902682	-
In-frame	ENST00000274458	ENST00000305031		TCGA	LD	BRCA	TCGA-XX-A899-01A	COMMD10	chr5	115469875	+	CHSY3	chr5	129519922	+
5CDS-3UTR	ENST00000274458	ENST00000507545		TCGA	LD	BRCA	TCGA-XX-A899-01A	COMMD10	chr5	115469875	+	CHSY3	chr5	129519922	+
In-frame	ENST00000515539	ENST00000305031		TCGA	LD	BRCA	TCGA-XX-A899-01A	COMMD10	chr5	115469875	+	CHSY3	chr5	129519922	+
5CDS-3UTR	ENST00000515539	ENST00000507545		TCGA	LD	BRCA	TCGA-XX-A899-01A	COMMD10	chr5	115469875	+	CHSY3	chr5	129519922	+
intron-3CDS	ENST00000503424	ENST00000305031		TCGA	LD	BRCA	TCGA-XX-A899-01A	COMMD10	chr5	115469875	+	CHSY3	chr5	129519922	+
intron-3UTR	ENST00000503424	ENST00000507545		TCGA	LD	BRCA	TCGA-XX-A899-01A	COMMD10	chr5	115469875	+	CHSY3	chr5	129519922	+
Frame-shit	ENST00000307602	ENST00000334126		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
Frame-shit	ENST00000307602	ENST00000313663		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
5CDS-intron	ENST00000307602	ENST00000542452		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
5CDS-intron	ENST00000307602	ENST00000539061		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
3UTR-3CDS	ENST00000524839	ENST00000334126		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
3UTR-3CDS	ENST00000524839	ENST00000313663		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
3UTR-intron	ENST00000524839	ENST00000542452		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
3UTR-intron	ENST00000524839	ENST00000539061		TCGA	LD	BRCA	TCGA-XX-A899-01A	HOOK3	chr8	42865548	+	C2CD3	chr11	73765716	-
intron-intron	ENST00000449833	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000449833	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000449833	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000449833	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000409161	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000409161	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000409161	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000409161	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000423696	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000423696	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000423696	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000423696	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338508	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338508	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338508	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000338508	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000409530	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000409530	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000409530	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000409530	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000449116	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000449116	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000449116	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000449116	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000357171	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000357171	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-intron	ENST00000357171	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000357171	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000468619	ENST00000441339		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000468619	ENST00000308946		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000468619	ENST00000535407		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5UTR-3UTR	ENST00000468619	ENST00000541137		TCGA	LD	BRCA	TCGA-XX-A89A-01A	SHANK2	chr11	70644548	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000338458	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
5CDS-intron	ENST00000338458	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
5CDS-intron	ENST00000338458	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
5CDS-intron	ENST00000338458	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000496106	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000496106	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000496106	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000496106	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000498517	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000498517	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000498517	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000498517	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000296315	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000296315	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000296315	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000296315	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000413728	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000413728	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000413728	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000413728	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000497267	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000497267	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000497267	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000497267	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000495373	ENST00000431842		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000495373	ENST00000493960		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000495373	ENST00000355628		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
intron-intron	ENST00000495373	ENST00000485156		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	ARHGEF3	chr3	56992851	-	FAM208A	chr3	56707753	-
Frame-shit	ENST00000394688	ENST00000561648		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394688	ENST00000563137		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394688	ENST00000562871		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394688	ENST00000262383		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394688	ENST00000535559		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394688	ENST00000567169		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394688	ENST00000562520		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000561648		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000563137		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000562871		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000262383		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000535559		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000567169		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
Frame-shit	ENST00000394689	ENST00000562520		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000561648		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000563137		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000562871		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000262383		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000535559		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000567169		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000401491	ENST00000562520		TCGA	LD	BRCA	TCGA-Z7-A8R6-01A	BRD7	chr16	50388336	-	ZNF423	chr16	49559405	-
In-frame	ENST00000256496	ENST00000302640		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000354582		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000423119		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000456211		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000256496	ENST00000357086		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000256496	ENST00000544951		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000256496	ENST00000443694		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000256496	ENST00000463980		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000302640		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000354582		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000423119		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000456211		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
In-frame	ENST00000419534	ENST00000357086		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000419534	ENST00000544951		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000419534	ENST00000443694		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000419534	ENST00000463980		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000302640		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000354582		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000423119		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000456211		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000468010	ENST00000357086		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-intron	ENST00000468010	ENST00000544951		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-intron	ENST00000468010	ENST00000443694		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
intron-intron	ENST00000468010	ENST00000463980		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4808214	+
Frame-shit	ENST00000378618	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
5UTR-3CDS	ENST00000536126	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
Frame-shit	ENST00000278460	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
Frame-shit	ENST00000395460	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
Frame-shit	ENST00000378615	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
5UTR-3CDS	ENST00000543718	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
intron-3CDS	ENST00000527268	ENST00000378623		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	C11orf49	chr11	46958402	+	LRP4	chr11	46886737	-
In-frame	ENST00000313070	ENST00000318842		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000313070	ENST00000338898		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000313070	ENST00000339363		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000313070	ENST00000309513		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000313070	ENST00000342811		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000313070	ENST00000378505		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
In-frame	ENST00000334010	ENST00000318842		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000334010	ENST00000338898		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000334010	ENST00000339363		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000334010	ENST00000309513		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000334010	ENST00000342811		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000334010	ENST00000378505		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
In-frame	ENST00000412584	ENST00000318842		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000412584	ENST00000338898		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000412584	ENST00000339363		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000412584	ENST00000309513		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000412584	ENST00000342811		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000412584	ENST00000378505		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
In-frame	ENST00000449022	ENST00000318842		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000449022	ENST00000338898		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000449022	ENST00000339363		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000449022	ENST00000309513		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000449022	ENST00000342811		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
5CDS-intron	ENST00000449022	ENST00000378505		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
intron-3CDS	ENST00000476131	ENST00000318842		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
intron-intron	ENST00000476131	ENST00000338898		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
intron-intron	ENST00000476131	ENST00000339363		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
intron-intron	ENST00000476131	ENST00000309513		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
intron-intron	ENST00000476131	ENST00000342811		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
intron-intron	ENST00000476131	ENST00000378505		TCGA	RV	CESC	TCGA-Q1-A6DW-01A	CADPS2	chr7	122078395	-	RPGR	chrX	38150737	-
Frame-shit	ENST00000263168	ENST00000371018		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
Frame-shit	ENST00000263168	ENST00000355977		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
Frame-shit	ENST00000263168	ENST00000357692		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
Frame-shit	ENST00000263168	ENST00000401041		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
Frame-shit	ENST00000263168	ENST00000371016		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
Frame-shit	ENST00000263168	ENST00000371014		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
5CDS-intron	ENST00000263168	ENST00000371012		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
5CDS-intron	ENST00000263168	ENST00000401042		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
5CDS-intron	ENST00000263168	ENST00000355356		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
5CDS-intron	ENST00000263168	ENST00000479067		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-3CDS	ENST00000476936	ENST00000371018		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-3CDS	ENST00000476936	ENST00000355977		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-3CDS	ENST00000476936	ENST00000357692		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-3CDS	ENST00000476936	ENST00000401041		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-3CDS	ENST00000476936	ENST00000371016		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-3CDS	ENST00000476936	ENST00000371014		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-intron	ENST00000476936	ENST00000371012		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-intron	ENST00000476936	ENST00000401042		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-intron	ENST00000476936	ENST00000355356		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
3UTR-intron	ENST00000476936	ENST00000479067		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CAPZA1	chr1	113189895	+	MIER1	chr1	67442278	+
Frame-shit	ENST00000330560	ENST00000380682		TCGA	RV	CESC	TCGA-VS-A8EK-01A	CDCA2	chr8	25327496	+	FRMPD4	chrX	12725588	+
Frame-shit	ENST00000380665	ENST00000380682		TCGA	RV	CESC	TCGA-VS-A8EK-01A	CDCA2	chr8	25327496	+	FRMPD4	chrX	12725588	+
intron-3CDS	ENST00000521098	ENST00000380682		TCGA	RV	CESC	TCGA-VS-A8EK-01A	CDCA2	chr8	25327496	+	FRMPD4	chrX	12725588	+
Frame-shit	ENST00000540306	ENST00000225276		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	DHX8	chr17	41573636	+	ST6GALNAC2	chr17	74562353	-
5CDS-intron	ENST00000540306	ENST00000586520		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	DHX8	chr17	41573636	+	ST6GALNAC2	chr17	74562353	-
Frame-shit	ENST00000262415	ENST00000225276		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	DHX8	chr17	41573636	+	ST6GALNAC2	chr17	74562353	-
5CDS-intron	ENST00000262415	ENST00000586520		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	DHX8	chr17	41573636	+	ST6GALNAC2	chr17	74562353	-
intron-3CDS	ENST00000311172	ENST00000524419		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3CDS	ENST00000311172	ENST00000528989		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3CDS	ENST00000311172	ENST00000315571		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3UTR	ENST00000311172	ENST00000529759		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000409314	ENST00000524419		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000409314	ENST00000528989		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000409314	ENST00000315571		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000409314	ENST00000529759		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000409418	ENST00000524419		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000409418	ENST00000528989		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000409418	ENST00000315571		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000409418	ENST00000529759		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3CDS	ENST00000458644	ENST00000524419		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3CDS	ENST00000458644	ENST00000528989		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3CDS	ENST00000458644	ENST00000315571		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3UTR	ENST00000458644	ENST00000529759		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3CDS	ENST00000409853	ENST00000524419		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3CDS	ENST00000409853	ENST00000528989		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3CDS	ENST00000409853	ENST00000315571		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
5UTR-3UTR	ENST00000409853	ENST00000529759		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3CDS	ENST00000409263	ENST00000524419		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3CDS	ENST00000409263	ENST00000528989		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3CDS	ENST00000409263	ENST00000315571		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
intron-3UTR	ENST00000409263	ENST00000529759		TCGA	RV	CESC	TCGA-BI-A0VR-01A	FCHSD2	chr11	72851076	-	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000490882	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000490882	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000490882	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000490882	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000429972	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000429972	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000429972	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000429972	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000295956	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000295956	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000295956	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000295956	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000358537	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000358537	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000358537	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000358537	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000357272	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000357272	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000357272	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000357272	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000348383	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000348383	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
Frame-shit	ENST00000348383	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
5CDS-intron	ENST00000348383	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000493452	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000493452	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000493452	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000493452	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000419752	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000419752	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000419752	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000419752	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000484981	ENST00000295951		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000484981	ENST00000416870		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000484981	ENST00000295952		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000383718		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000428312		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000449503		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000472546		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000442599		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000495364		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-intron	ENST00000484981	ENST00000494088		TCGA	RV	CESC	TCGA-EA-A556-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57902633	+
intron-3CDS	ENST00000443841	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000353609	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000585836	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000591858	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000417353	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
Frame-shit	ENST00000590335	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000592436	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000592811	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
In-frame	ENST00000586615	ENST00000263370		TCGA	RV	CESC	TCGA-C5-A7X3-01A	FOSB	chr19	45974207	+	ITPKC	chr19	41231245	+
3UTR-3CDS	ENST00000482812	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
3UTR-intron	ENST00000482812	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
3UTR-intron	ENST00000482812	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
5UTR-3CDS	ENST00000430044	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
5UTR-intron	ENST00000430044	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
5UTR-intron	ENST00000430044	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
In-frame	ENST00000452146	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
5CDS-intron	ENST00000452146	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
5CDS-intron	ENST00000452146	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-3CDS	ENST00000434507	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000434507	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000434507	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-3CDS	ENST00000415421	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000415421	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000415421	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-3CDS	ENST00000320311	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000320311	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000320311	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-3CDS	ENST00000422997	ENST00000361727		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000422997	ENST00000538075		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-intron	ENST00000422997	ENST00000463592		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	GALNT11	chr7	151722969	+	CNTNAP2	chr7	147259230	+
intron-5UTR	ENST00000336470	ENST00000375491		TCGA	RV	CESC	TCGA-ZJ-A8QR-01A	GNL3L	chrX	54556852	+	XAGE3	chrX	52896172	-
intron-5UTR	ENST00000336470	ENST00000346279		TCGA	RV	CESC	TCGA-ZJ-A8QR-01A	GNL3L	chrX	54556852	+	XAGE3	chrX	52896172	-
5UTR-5UTR	ENST00000360845	ENST00000375491		TCGA	RV	CESC	TCGA-ZJ-A8QR-01A	GNL3L	chrX	54556852	+	XAGE3	chrX	52896172	-
5UTR-5UTR	ENST00000360845	ENST00000346279		TCGA	RV	CESC	TCGA-ZJ-A8QR-01A	GNL3L	chrX	54556852	+	XAGE3	chrX	52896172	-
3UTR-5UTR	ENST00000489691	ENST00000375491		TCGA	RV	CESC	TCGA-ZJ-A8QR-01A	GNL3L	chrX	54556852	+	XAGE3	chrX	52896172	-
3UTR-5UTR	ENST00000489691	ENST00000346279		TCGA	RV	CESC	TCGA-ZJ-A8QR-01A	GNL3L	chrX	54556852	+	XAGE3	chrX	52896172	-
Frame-shit	ENST00000273960	ENST00000438189		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
5CDS-intron	ENST00000273960	ENST00000542025		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
5CDS-intron	ENST00000273960	ENST00000325656		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
Frame-shit	ENST00000380265	ENST00000438189		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
5CDS-intron	ENST00000380265	ENST00000542025		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
5CDS-intron	ENST00000380265	ENST00000325656		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
Frame-shit	ENST00000264346	ENST00000438189		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
5CDS-intron	ENST00000264346	ENST00000542025		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
5CDS-intron	ENST00000264346	ENST00000325656		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	HERC6	chr4	89312031	+	CABP4	chr11	67225842	+
intron-intron	ENST00000356476	ENST00000377777		TCGA	RV	CESC	TCGA-C5-A8XH-01A	HIST1H3D	chr6	26199087	-	HIST1H2BD	chr6	26171203	+
intron-3UTR	ENST00000356476	ENST00000289316		TCGA	RV	CESC	TCGA-C5-A8XH-01A	HIST1H3D	chr6	26199087	-	HIST1H2BD	chr6	26171203	+
5UTR-intron	ENST00000377831	ENST00000377777		TCGA	RV	CESC	TCGA-C5-A8XH-01A	HIST1H3D	chr6	26199087	-	HIST1H2BD	chr6	26171203	+
5UTR-3UTR	ENST00000377831	ENST00000289316		TCGA	RV	CESC	TCGA-C5-A8XH-01A	HIST1H3D	chr6	26199087	-	HIST1H2BD	chr6	26171203	+
5CDS-intron	ENST00000383329	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000383329	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000376228	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000423509	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000430940	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422726	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000424832	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458192	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000422921	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000456487	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000420206	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495725	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419135	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000433153	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000429840	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000457903	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000479546	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400395	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383323	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000434884	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400394	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000494871	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000453809	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000414249	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000419590	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000438171	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000552865	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000495898	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383483	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000383487	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000458668	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000556679		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000456570		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000477310		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000425368		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000497841		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000417261		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000427888		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000459734		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000455591		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000433503		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000474621		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000424727		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000436692		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000473139		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000399981		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000419920		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000465211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000375455		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000489605		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000426239		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000419411		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-intron	ENST00000400341	ENST00000460958		TCGA	RV	CESC	TCGA-VS-A9UO-01A	HLA-C	chr6	31236526	-	CFB	chr6	31913427	+
intron-3CDS	ENST00000539243	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-intron	ENST00000539243	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
In-frame	ENST00000313093	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
5CDS-intron	ENST00000313093	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
5UTR-3CDS	ENST00000536472	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
5UTR-intron	ENST00000536472	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
In-frame	ENST00000590214	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
5CDS-intron	ENST00000590214	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-3CDS	ENST00000586866	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-intron	ENST00000586866	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-3CDS	ENST00000543365	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-intron	ENST00000543365	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-3CDS	ENST00000592335	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-intron	ENST00000592335	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-3CDS	ENST00000590577	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-intron	ENST00000590577	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-3CDS	ENST00000591169	ENST00000234389		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
intron-intron	ENST00000591169	ENST00000588335		TCGA	RV	CESC	TCGA-VS-A8EC-01A	HMHA1	chr19	1067494	+	GRIN3B	chr19	1007627	+
5CDS-3UTR	ENST00000326427	ENST00000355327		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000326427	ENST00000261862		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000326427	ENST00000357769		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000326427	ENST00000567838		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000335005	ENST00000355327		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000335005	ENST00000261862		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000335005	ENST00000357769		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000335005	ENST00000567838		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000326407	ENST00000355327		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000326407	ENST00000261862		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000326407	ENST00000357769		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000326407	ENST00000567838		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000409704	ENST00000355327		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000409704	ENST00000261862		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-intron	ENST00000409704	ENST00000357769		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-intron	ENST00000409704	ENST00000567838		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000492029	ENST00000355327		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000492029	ENST00000261862		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-intron	ENST00000492029	ENST00000357769		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
intron-intron	ENST00000492029	ENST00000567838		TCGA	RV	CESC	TCGA-VS-A9UR-01A	ITM2C	chr2	231743962	+	THSD4	chr15	72072881	+
In-frame	ENST00000389484	ENST00000265846		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
5CDS-intron	ENST00000389484	ENST00000449296		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
5CDS-intron	ENST00000389484	ENST00000539900		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
5CDS-5UTR	ENST00000389484	ENST00000463358		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
intron-3CDS	ENST00000486364	ENST00000265846		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
intron-intron	ENST00000486364	ENST00000449296		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
intron-intron	ENST00000486364	ENST00000539900		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
intron-5UTR	ENST00000486364	ENST00000463358		TCGA	RV	CESC	TCGA-EK-A2GZ-01A	LRP1B	chr2	142237965	-	ADAP1	chr7	975141	-
5UTR-intron	ENST00000344686	ENST00000431281		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000591859		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000586346		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000398322		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000592162		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000376955		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000321854		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-intron	ENST00000344686	ENST00000591136		TCGA	RV	CESC	TCGA-C5-A2LX-01A	MAP3K14	chr17	43362179	-	ACBD4	chr17	43219950	+
5UTR-3CDS	ENST00000311028	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-3CDS	ENST00000311028	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000311028	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000311028	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000311028	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-3CDS	ENST00000395923	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-3CDS	ENST00000395923	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000395923	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000395923	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000395923	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000220931	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000220931	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000220931	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000220931	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000220931	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-3CDS	ENST00000521599	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-3CDS	ENST00000521599	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000521599	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000521599	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5UTR-intron	ENST00000521599	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000522951	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000522951	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000522951	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000522951	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000522951	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000519508	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000519508	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000519508	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000519508	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000519508	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000521371	ENST00000520539		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-3CDS	ENST00000521371	ENST00000220959		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000521371	ENST00000518205		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000521371	ENST00000521922		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
intron-intron	ENST00000521371	ENST00000519528		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NCALD	chr8	103032465	-	UBR5	chr8	103317523	-
5CDS-5UTR	ENST00000487099	ENST00000373555		TCGA	RV	CESC	TCGA-VS-A9UT-01A	NR6A1	chr9	127495587	-	GOLGA1	chr9	127701145	-
5CDS-5UTR	ENST00000373584	ENST00000373555		TCGA	RV	CESC	TCGA-VS-A9UT-01A	NR6A1	chr9	127495587	-	GOLGA1	chr9	127701145	-
5CDS-5UTR	ENST00000416460	ENST00000373555		TCGA	RV	CESC	TCGA-VS-A9UT-01A	NR6A1	chr9	127495587	-	GOLGA1	chr9	127701145	-
5CDS-5UTR	ENST00000344523	ENST00000373555		TCGA	RV	CESC	TCGA-VS-A9UT-01A	NR6A1	chr9	127495587	-	GOLGA1	chr9	127701145	-
Frame-shit	ENST00000425146	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000425146	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000425146	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000425146	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000446737	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000446737	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000446737	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000446737	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000372010	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000372010	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000372010	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000372010	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000519681	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000519681	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000519681	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000519681	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000372007	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000372007	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000372007	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000372007	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000518291	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000518291	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000518291	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000518291	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
intron-3CDS	ENST00000484442	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
intron-3CDS	ENST00000484442	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
intron-intron	ENST00000484442	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
intron-intron	ENST00000484442	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000262836	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000262836	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000262836	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000262836	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000360648	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000360648	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000360648	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000360648	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000417227	ENST00000371139		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
Frame-shit	ENST00000417227	ENST00000360027		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000417227	ENST00000491950		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000417227	ENST00000477673		TCGA	RV	CESC	TCGA-IR-A3LB-01A	PAK3	chrX	110366506	+	SH2D1A	chrX	123499611	+
5CDS-intron	ENST00000286091	ENST00000354817		TCGA	RV	CESC	TCGA-C5-A1ML-01A	PDIA4	chr7	148700154	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000286091	ENST00000527202		TCGA	RV	CESC	TCGA-C5-A1ML-01A	PDIA4	chr7	148700154	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000286091	ENST00000532502		TCGA	RV	CESC	TCGA-C5-A1ML-01A	PDIA4	chr7	148700154	-	FAR1	chr11	13744912	+
In-frame	ENST00000249636	ENST00000178640		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000249636	ENST00000560591		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000249636	ENST00000395476		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000249636	ENST00000354498		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000249636	ENST00000340972		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
In-frame	ENST00000545237	ENST00000178640		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000545237	ENST00000560591		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000545237	ENST00000395476		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000545237	ENST00000354498		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
5CDS-intron	ENST00000545237	ENST00000340972		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
intron-3CDS	ENST00000567417	ENST00000178640		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
intron-intron	ENST00000567417	ENST00000560591		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
intron-intron	ENST00000567417	ENST00000395476		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
intron-intron	ENST00000567417	ENST00000354498		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
intron-intron	ENST00000567417	ENST00000340972		TCGA	RV	CESC	TCGA-RA-A741-01A	PIAS1	chr15	68379088	+	MAP2K5	chr15	67984817	+
In-frame	ENST00000477593	ENST00000389567		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
In-frame	ENST00000477593	ENST00000289135		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
5CDS-intron	ENST00000477593	ENST00000460133		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
In-frame	ENST00000544716	ENST00000389567		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
In-frame	ENST00000544716	ENST00000289135		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
5CDS-intron	ENST00000544716	ENST00000460133		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
Frame-shit	ENST00000289153	ENST00000389567		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
Frame-shit	ENST00000289153	ENST00000289135		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
5CDS-intron	ENST00000289153	ENST00000460133		TCGA	RV	CESC	TCGA-MA-AA43-01A	PIK3CB	chr3	138400809	-	ESYT3	chr3	138176410	+
Frame-shit	ENST00000371953	ENST00000370187		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
Frame-shit	ENST00000371953	ENST00000393441		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
Frame-shit	ENST00000371953	ENST00000408038		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
5CDS-intron	ENST00000371953	ENST00000493877		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
intron-3CDS	ENST00000472832	ENST00000370187		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
intron-3CDS	ENST00000472832	ENST00000393441		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
intron-3CDS	ENST00000472832	ENST00000408038		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
intron-intron	ENST00000472832	ENST00000493877		TCGA	RV	CESC	TCGA-IR-A3LL-01A	PTEN	chr10	89693008	+	BTRC	chr10	103290994	+
Frame-shit	ENST00000262879	ENST00000342704		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000262879	ENST00000375279		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000262879	ENST00000344201		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000262879	ENST00000397798		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000262879	ENST00000346541		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000262879	ENST00000397800		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000262879	ENST00000492345		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000262879	ENST00000359606		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000262879	ENST00000491618		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000262879	ENST00000543126		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000397042	ENST00000342704		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000397042	ENST00000375279		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397042	ENST00000344201		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397042	ENST00000397798		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397042	ENST00000346541		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397042	ENST00000397800		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397042	ENST00000492345		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397042	ENST00000359606		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000397042	ENST00000491618		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000397042	ENST00000543126		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000397038	ENST00000342704		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000397038	ENST00000375279		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397038	ENST00000344201		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397038	ENST00000397798		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397038	ENST00000346541		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397038	ENST00000397800		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397038	ENST00000492345		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397038	ENST00000359606		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000397038	ENST00000491618		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000397038	ENST00000543126		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000537204	ENST00000342704		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000537204	ENST00000375279		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000537204	ENST00000344201		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000537204	ENST00000397798		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000537204	ENST00000346541		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000537204	ENST00000397800		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000537204	ENST00000492345		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000537204	ENST00000359606		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000537204	ENST00000491618		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000537204	ENST00000543126		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000397040	ENST00000342704		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000397040	ENST00000375279		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397040	ENST00000344201		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397040	ENST00000397798		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397040	ENST00000346541		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397040	ENST00000397800		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397040	ENST00000492345		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000397040	ENST00000359606		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000397040	ENST00000491618		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000397040	ENST00000543126		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-3CDS	ENST00000490114	ENST00000342704		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-3CDS	ENST00000490114	ENST00000375279		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000490114	ENST00000344201		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000490114	ENST00000397798		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000490114	ENST00000346541		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000490114	ENST00000397800		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000490114	ENST00000492345		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000490114	ENST00000359606		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-intron	ENST00000490114	ENST00000491618		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
intron-intron	ENST00000490114	ENST00000543126		TCGA	RV	CESC	TCGA-C5-A1BE-01B	RALGAPB	chr20	37128276	+	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000287912	ENST00000389413		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000287912	ENST00000409483		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000287912	ENST00000389416		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000287912	ENST00000389418		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000287912	ENST00000404321		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000401878	ENST00000389413		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000401878	ENST00000409483		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000401878	ENST00000389416		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000401878	ENST00000389418		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000401878	ENST00000404321		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000392759	ENST00000389413		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000392759	ENST00000409483		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000392759	ENST00000389416		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000392759	ENST00000389418		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000392759	ENST00000404321		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000486747	ENST00000389413		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000486747	ENST00000409483		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000486747	ENST00000389416		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000486747	ENST00000389418		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000486747	ENST00000404321		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000341148	ENST00000389413		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000341148	ENST00000409483		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000341148	ENST00000389416		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000341148	ENST00000389418		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
intron-3CDS	ENST00000341148	ENST00000404321		TCGA	RV	CESC	TCGA-VS-A9UB-01A	RBM33	chr7	155465609	+	PTPRN2	chr7	157997965	-
In-frame	ENST00000254663	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000254663	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000254663	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000254663	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000254663	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
5UTR-3CDS	ENST00000373332	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
5UTR-3CDS	ENST00000373332	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
5UTR-3CDS	ENST00000373332	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
5UTR-3CDS	ENST00000373332	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
5UTR-3CDS	ENST00000373332	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000555827	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000555827	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000555827	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000555827	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000555827	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000409736	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000409736	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000409736	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000409736	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000409736	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
intron-3CDS	ENST00000422984	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
intron-3CDS	ENST00000422984	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
intron-3CDS	ENST00000422984	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
intron-3CDS	ENST00000422984	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
intron-3CDS	ENST00000422984	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000429612	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000429612	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000429612	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000429612	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
In-frame	ENST00000429612	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
3UTR-3CDS	ENST00000480859	ENST00000272930		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
3UTR-3CDS	ENST00000480859	ENST00000409633		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
3UTR-3CDS	ENST00000480859	ENST00000414443		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
3UTR-3CDS	ENST00000480859	ENST00000409953		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
3UTR-3CDS	ENST00000480859	ENST00000409332		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SCLY	chr2	238976806	+	UBE2F	chr2	238933983	+
intron-3CDS	ENST00000535742	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535742	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535742	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535742	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535742	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000546025	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546025	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546025	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546025	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546025	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000345254	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000345254	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000345254	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000345254	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000345254	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000540668	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000540668	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000540668	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000540668	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000540668	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000339365	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339365	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339365	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339365	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339365	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000411652	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000411652	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000411652	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000411652	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000411652	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000496827	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000496827	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000496827	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000496827	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
intron-intron	ENST00000496827	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VI-01A	SEC24C	chr10	75531919	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000339276	ENST00000409078		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000339276	ENST00000541859		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000339276	ENST00000541377		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000339276	ENST00000455322		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000339276	ENST00000397587		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000339276	ENST00000263710		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000339276	ENST00000545861		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
5CDS-5UTR	ENST00000339276	ENST00000430234		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SFN	chr1	27190947	+	CLASP1	chr2	122217701	-
Frame-shit	ENST00000355086	ENST00000328735		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
Frame-shit	ENST00000355086	ENST00000330333		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
Frame-shit	ENST00000355086	ENST00000347667		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000355086	ENST00000466122		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
Frame-shit	ENST00000357825	ENST00000328735		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
Frame-shit	ENST00000357825	ENST00000330333		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
Frame-shit	ENST00000357825	ENST00000347667		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000357825	ENST00000466122		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
intron-3CDS	ENST00000543397	ENST00000328735		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
intron-3CDS	ENST00000543397	ENST00000330333		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
intron-3CDS	ENST00000543397	ENST00000347667		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
intron-intron	ENST00000543397	ENST00000466122		TCGA	RV	CESC	TCGA-EK-A2PM-01A	SRGAP1	chr12	64238663	+	BACE2	chr21	42598193	+
In-frame	ENST00000414007	ENST00000368089		TCGA	RV	CESC	TCGA-VS-A957-01A	SRGAP2	chr1	206610392	+	KCNJ10	chr1	160012322	-
5CDS-intron	ENST00000414007	ENST00000509700		TCGA	RV	CESC	TCGA-VS-A957-01A	SRGAP2	chr1	206610392	+	KCNJ10	chr1	160012322	-
5UTR-3CDS	ENST00000419187	ENST00000368089		TCGA	RV	CESC	TCGA-VS-A957-01A	SRGAP2	chr1	206610392	+	KCNJ10	chr1	160012322	-
5UTR-intron	ENST00000419187	ENST00000509700		TCGA	RV	CESC	TCGA-VS-A957-01A	SRGAP2	chr1	206610392	+	KCNJ10	chr1	160012322	-
intron-3CDS	ENST00000471256	ENST00000368089		TCGA	RV	CESC	TCGA-VS-A957-01A	SRGAP2	chr1	206610392	+	KCNJ10	chr1	160012322	-
intron-intron	ENST00000471256	ENST00000509700		TCGA	RV	CESC	TCGA-VS-A957-01A	SRGAP2	chr1	206610392	+	KCNJ10	chr1	160012322	-
5CDS-5UTR	ENST00000419617	ENST00000523719		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000419617	ENST00000276609		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000419617	ENST00000309536		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000419617	ENST00000520249		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-5UTR	ENST00000523601	ENST00000523719		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000523601	ENST00000276609		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000523601	ENST00000309536		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
5CDS-intron	ENST00000523601	ENST00000520249		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
intron-5UTR	ENST00000521768	ENST00000523719		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
intron-intron	ENST00000521768	ENST00000276609		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
intron-intron	ENST00000521768	ENST00000309536		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
intron-intron	ENST00000521768	ENST00000520249		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	SLC26A7	chr8	92231118	+
In-frame	ENST00000373943	ENST00000319394		TCGA	RV	CESC	TCGA-VS-A9V3-01A	STX12	chr1	28099936	+	WDTC1	chr1	27630112	+
In-frame	ENST00000373943	ENST00000361771		TCGA	RV	CESC	TCGA-VS-A9V3-01A	STX12	chr1	28099936	+	WDTC1	chr1	27630112	+
3UTR-3CDS	ENST00000468761	ENST00000319394		TCGA	RV	CESC	TCGA-VS-A9V3-01A	STX12	chr1	28099936	+	WDTC1	chr1	27630112	+
3UTR-3CDS	ENST00000468761	ENST00000361771		TCGA	RV	CESC	TCGA-VS-A9V3-01A	STX12	chr1	28099936	+	WDTC1	chr1	27630112	+
In-frame	ENST00000347230	ENST00000487099		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
In-frame	ENST00000347230	ENST00000373584		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
In-frame	ENST00000347230	ENST00000416460		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
In-frame	ENST00000347230	ENST00000344523		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
Frame-shit	ENST00000557306	ENST00000487099		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
Frame-shit	ENST00000557306	ENST00000373584		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
Frame-shit	ENST00000557306	ENST00000416460		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
Frame-shit	ENST00000557306	ENST00000344523		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
intron-3CDS	ENST00000555452	ENST00000487099		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
intron-3CDS	ENST00000555452	ENST00000373584		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
intron-3CDS	ENST00000555452	ENST00000416460		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
intron-3CDS	ENST00000555452	ENST00000344523		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ZFYVE26	chr14	68228083	-	NR6A1	chr9	127300598	-
5UTR-3CDS	ENST00000336078	ENST00000382713		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-intron	ENST00000336078	ENST00000584435		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-3CDS	ENST00000591083	ENST00000382713		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-intron	ENST00000591083	ENST00000584435		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-3CDS	ENST00000589288	ENST00000382713		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-intron	ENST00000589288	ENST00000584435		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-3CDS	ENST00000591230	ENST00000382713		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-intron	ENST00000591230	ENST00000584435		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-3CDS	ENST00000591808	ENST00000382713		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
5UTR-intron	ENST00000591808	ENST00000584435		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
intron-3CDS	ENST00000588956	ENST00000382713		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
intron-intron	ENST00000588956	ENST00000584435		TCGA	RV	CESC	TCGA-C5-A7CK-01A	ZNF532	chr18	56532811	+	DOK6	chr18	67508480	+
In-frame	ENST00000590798	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
In-frame	ENST00000590798	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-3UTR	ENST00000590798	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-5UTR	ENST00000590798	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
In-frame	ENST00000538752	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
In-frame	ENST00000538752	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-3UTR	ENST00000538752	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-5UTR	ENST00000538752	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
In-frame	ENST00000591944	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
In-frame	ENST00000591944	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-3UTR	ENST00000591944	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-5UTR	ENST00000591944	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000592625	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000592625	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3UTR	ENST00000592625	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-5UTR	ENST00000592625	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000545530	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000545530	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3UTR	ENST00000545530	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-5UTR	ENST00000545530	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000343949	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000343949	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3UTR	ENST00000343949	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-5UTR	ENST00000343949	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000358987	ENST00000602198		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000358987	ENST00000253435		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3UTR	ENST00000358987	ENST00000601707		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
intron-5UTR	ENST00000358987	ENST00000598265		TCGA	RV	CESC	TCGA-VS-A8Q9-01A	ZNF763	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-5UTR	ENST00000543245	ENST00000377795		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000543245	ENST00000353334		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000543245	ENST00000524315		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000543245	ENST00000009530		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000356839	ENST00000377795		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000356839	ENST00000353334		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000356839	ENST00000524315		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000356839	ENST00000009530		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000350303	ENST00000377795		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000350303	ENST00000353334		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000350303	ENST00000524315		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000350303	ENST00000009530		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000581562	ENST00000377795		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000581562	ENST00000353334		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000581562	ENST00000524315		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000581562	ENST00000009530		TCGA	RV	CESC	TCGA-EA-A3HU-01A	ACADVL	chr17	7120492	+	CD74	chr5	149792314	-
intron-3CDS	ENST00000256997	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000256997	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000256997	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000256997	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
Frame-shit	ENST00000529444	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
Frame-shit	ENST00000529444	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
Frame-shit	ENST00000529444	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
Frame-shit	ENST00000529444	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000527256	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000527256	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000527256	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000527256	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000537863	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000537863	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000537863	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000537863	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000533929	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000533929	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000533929	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000533929	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000525230	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000525230	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000525230	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000525230	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000530453	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000530453	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000530453	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000530453	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000444355	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000444355	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000444355	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000444355	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000529788	ENST00000377795		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000529788	ENST00000353334		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000529788	ENST00000524315		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
intron-3CDS	ENST00000529788	ENST00000009530		TCGA	RV	CESC	TCGA-IR-A3LH-01A	ACP2	chr11	47261044	-	CD74	chr5	149792295	-
Frame-shit	ENST00000336665	ENST00000371847		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000336665	ENST00000371843		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
In-frame	ENST00000336665	ENST00000396199		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
5CDS-intron	ENST00000336665	ENST00000463938		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000304032	ENST00000371847		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000304032	ENST00000371843		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
In-frame	ENST00000304032	ENST00000396199		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
5CDS-intron	ENST00000304032	ENST00000463938		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000409538	ENST00000371847		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000409538	ENST00000371843		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
In-frame	ENST00000409538	ENST00000396199		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
5CDS-intron	ENST00000409538	ENST00000463938		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000428334	ENST00000371847		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
Frame-shit	ENST00000428334	ENST00000371843		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
In-frame	ENST00000428334	ENST00000396199		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
5CDS-intron	ENST00000428334	ENST00000463938		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
intron-3CDS	ENST00000409457	ENST00000371847		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
intron-3CDS	ENST00000409457	ENST00000371843		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
intron-3CDS	ENST00000409457	ENST00000396199		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
intron-intron	ENST00000409457	ENST00000463938		TCGA	RV	CESC	TCGA-EK-A2PM-01A	AGAP1	chr2	236817550	+	SPATA6	chr1	48764565	-
In-frame	ENST00000354567	ENST00000370794		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000354567	ENST00000357428		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000354567	ENST00000370793		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
5CDS-intron	ENST00000354567	ENST00000370792		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
5CDS-intron	ENST00000354567	ENST00000528150		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000344720	ENST00000370794		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000344720	ENST00000357428		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000344720	ENST00000370793		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
5CDS-intron	ENST00000344720	ENST00000370792		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
5CDS-intron	ENST00000344720	ENST00000528150		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
intron-3CDS	ENST00000317704	ENST00000370794		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
intron-3CDS	ENST00000317704	ENST00000357428		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
intron-3CDS	ENST00000317704	ENST00000370793		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
intron-intron	ENST00000317704	ENST00000370792		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
intron-intron	ENST00000317704	ENST00000528150		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000478255	ENST00000370794		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000478255	ENST00000357428		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
In-frame	ENST00000478255	ENST00000370793		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
5CDS-intron	ENST00000478255	ENST00000370792		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
5CDS-intron	ENST00000478255	ENST00000528150		TCGA	RV	CESC	TCGA-WL-A834-01A	AK5	chr1	78001723	+	USP33	chr1	78167156	-
intron-5UTR	ENST00000307790	ENST00000401950		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000307790	ENST00000333027		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000307790	ENST00000323630		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000307790	ENST00000351488		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-intron	ENST00000307790	ENST00000406629		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-3UTR	ENST00000307790	ENST00000415511		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
5UTR-5UTR	ENST00000397771	ENST00000401950		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
5UTR-5UTR	ENST00000397771	ENST00000333027		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
5UTR-5UTR	ENST00000397771	ENST00000323630		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
5UTR-5UTR	ENST00000397771	ENST00000351488		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
5UTR-intron	ENST00000397771	ENST00000406629		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
5UTR-3UTR	ENST00000397771	ENST00000415511		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000542393	ENST00000401950		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000542393	ENST00000333027		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000542393	ENST00000323630		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000542393	ENST00000351488		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-intron	ENST00000542393	ENST00000406629		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-3UTR	ENST00000542393	ENST00000415511		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000478812	ENST00000401950		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000478812	ENST00000333027		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000478812	ENST00000323630		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-5UTR	ENST00000478812	ENST00000351488		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-intron	ENST00000478812	ENST00000406629		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
intron-3UTR	ENST00000478812	ENST00000415511		TCGA	RV	CESC	TCGA-VS-A9U5-01A	ASCC2	chr22	30230478	-	MTMR3	chr22	30353025	+
In-frame	ENST00000368346	ENST00000331110		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000348120		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000366563		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000366564		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000366565		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000446183		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000366562		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000401882		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000368346	ENST00000407727		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000331110		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000348120		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000366563		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000366564		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000366565		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000446183		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000366562		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000401882		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
In-frame	ENST00000392403	ENST00000407727		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000331110		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000348120		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000366563		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000366564		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000366565		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000446183		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000366562		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000401882		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
intron-3CDS	ENST00000548830	ENST00000407727		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ASH1L	chr1	155447677	-	RGS7	chr1	240979715	-
Frame-shit	ENST00000328735	ENST00000355086		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000328735	ENST00000357825		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000328735	ENST00000543397		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000330333	ENST00000355086		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000330333	ENST00000357825		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000330333	ENST00000543397		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000347667	ENST00000355086		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000347667	ENST00000357825		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000347667	ENST00000543397		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000466122	ENST00000355086		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000466122	ENST00000357825		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000466122	ENST00000543397		TCGA	RV	CESC	TCGA-EK-A2PM-01A	BACE2	chr21	42540502	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000355831	ENST00000303735		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000355831	ENST00000409149		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000355831	ENST00000409058		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000355831	ENST00000409662		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
5CDS-intron	ENST00000355831	ENST00000493887		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000343439	ENST00000303735		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000343439	ENST00000409149		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000343439	ENST00000409058		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000343439	ENST00000409662		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
5CDS-intron	ENST00000343439	ENST00000493887		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392782	ENST00000303735		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392782	ENST00000409149		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392782	ENST00000409058		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392782	ENST00000409662		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
5CDS-intron	ENST00000392782	ENST00000493887		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392783	ENST00000303735		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392783	ENST00000409149		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392783	ENST00000409058		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000392783	ENST00000409662		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
5CDS-intron	ENST00000392783	ENST00000493887		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000483316	ENST00000303735		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000483316	ENST00000409149		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000483316	ENST00000409058		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000483316	ENST00000409662		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
intron-intron	ENST00000483316	ENST00000493887		TCGA	RV	CESC	TCGA-VS-A8QH-01A	BAZ2B	chr2	160241666	-	SLC38A11	chr2	165802237	-
5UTR-3CDS	ENST00000234739	ENST00000271732		TCGA	RV	CESC	TCGA-VS-A8QC-01A	BCL9	chr1	147013444	+	GOLPH3L	chr1	150636239	-
5UTR-intron	ENST00000234739	ENST00000540514		TCGA	RV	CESC	TCGA-VS-A8QC-01A	BCL9	chr1	147013444	+	GOLPH3L	chr1	150636239	-
5UTR-intron	ENST00000234739	ENST00000479757		TCGA	RV	CESC	TCGA-VS-A8QC-01A	BCL9	chr1	147013444	+	GOLPH3L	chr1	150636239	-
intron-3CDS	ENST00000473292	ENST00000271732		TCGA	RV	CESC	TCGA-VS-A8QC-01A	BCL9	chr1	147013444	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000473292	ENST00000540514		TCGA	RV	CESC	TCGA-VS-A8QC-01A	BCL9	chr1	147013444	+	GOLPH3L	chr1	150636239	-
intron-intron	ENST00000473292	ENST00000479757		TCGA	RV	CESC	TCGA-VS-A8QC-01A	BCL9	chr1	147013444	+	GOLPH3L	chr1	150636239	-
Frame-shit	ENST00000448841	ENST00000369902		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000448841	ENST00000369899		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
Frame-shit	ENST00000448841	ENST00000423559		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
5CDS-intron	ENST00000448841	ENST00000471000		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
intron-3CDS	ENST00000369889	ENST00000369902		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
intron-3CDS	ENST00000369889	ENST00000369899		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
intron-3CDS	ENST00000369889	ENST00000423559		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
intron-intron	ENST00000369889	ENST00000471000		TCGA	RV	CESC	TCGA-FU-A3HZ-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104375025	+
5CDS-5UTR	ENST00000351293	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000351293	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322635	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322635	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000394762	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000394762	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000423381	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000423381	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322680	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322680	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000305762	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000305762	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000372765	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000372765	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5UTR-5UTR	ENST00000472912	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5UTR-5UTR	ENST00000472912	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000444854	ENST00000409178		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000444854	ENST00000412307		TCGA	RV	CESC	TCGA-C5-A1BN-01B	CAMK2G	chr10	75620588	-	C10orf55	chr10	75676399	-
5UTR-3CDS	ENST00000351266	ENST00000367294		TCGA	RV	CESC	TCGA-C5-A902-01A	CNTFR	chr9	34589553	-	C6orf211	chr6	151775683	+
5UTR-intron	ENST00000351266	ENST00000545879		TCGA	RV	CESC	TCGA-C5-A902-01A	CNTFR	chr9	34589553	-	C6orf211	chr6	151775683	+
5UTR-3UTR	ENST00000351266	ENST00000483931		TCGA	RV	CESC	TCGA-C5-A902-01A	CNTFR	chr9	34589553	-	C6orf211	chr6	151775683	+
5UTR-3CDS	ENST00000378980	ENST00000367294		TCGA	RV	CESC	TCGA-C5-A902-01A	CNTFR	chr9	34589553	-	C6orf211	chr6	151775683	+
5UTR-intron	ENST00000378980	ENST00000545879		TCGA	RV	CESC	TCGA-C5-A902-01A	CNTFR	chr9	34589553	-	C6orf211	chr6	151775683	+
5UTR-3UTR	ENST00000378980	ENST00000483931		TCGA	RV	CESC	TCGA-C5-A902-01A	CNTFR	chr9	34589553	-	C6orf211	chr6	151775683	+
intron-3CDS	ENST00000374746	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000374746	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000374746	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000374746	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000374748	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000374748	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000374748	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000374748	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000374749	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000374749	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000374749	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000374749	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-3CDS	ENST00000374751	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-3CDS	ENST00000374751	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-intron	ENST00000374751	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-intron	ENST00000374751	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-3CDS	ENST00000602371	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-3CDS	ENST00000602371	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-intron	ENST00000602371	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-intron	ENST00000602371	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-3CDS	ENST00000374742	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-3CDS	ENST00000374742	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-intron	ENST00000374742	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
5UTR-intron	ENST00000374742	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000537177	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000537177	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000537177	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000537177	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000478044	ENST00000025008		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-3CDS	ENST00000478044	ENST00000435644		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000478044	ENST00000521611		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
intron-intron	ENST00000478044	ENST00000539297		TCGA	RV	CESC	TCGA-WL-A834-01A	CUL2	chr10	35379358	-	RB1CC1	chr8	53589131	-
Frame-shit	ENST00000357674	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000357674	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000357674	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000357674	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000357674	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000314062	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000314062	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000314062	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000314062	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000314062	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000346964	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000346964	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000346964	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000346964	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000346964	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000419354	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000419354	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000419354	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000419354	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000419354	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000452595	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000452595	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000452595	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000452595	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000452595	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000422288	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000422288	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000422288	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000422288	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000422288	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000448528	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000448528	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000448528	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000448528	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000448528	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000443183	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000443183	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000443183	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000443183	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000443183	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000450955	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000450955	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000450955	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000450955	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000450955	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000392382	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000392382	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000392382	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
Frame-shit	ENST00000392382	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
5CDS-intron	ENST00000392382	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
intron-3CDS	ENST00000485409	ENST00000392379		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
intron-3CDS	ENST00000485409	ENST00000392378		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
intron-3CDS	ENST00000485409	ENST00000358186		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
intron-3CDS	ENST00000485409	ENST00000441275		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
intron-intron	ENST00000485409	ENST00000476764		TCGA	RV	CESC	TCGA-VS-A959-01A	DLG1	chr3	196817783	-	BDH1	chr3	197239235	-
In-frame	ENST00000375735	ENST00000278505		TCGA	RV	CESC	TCGA-EX-A3L1-01A	DYNC2H1	chr11	103229087	+	ENDOD1	chr11	94861541	+
intron-3CDS	ENST00000334267	ENST00000278505		TCGA	RV	CESC	TCGA-EX-A3L1-01A	DYNC2H1	chr11	103229087	+	ENDOD1	chr11	94861541	+
In-frame	ENST00000398093	ENST00000278505		TCGA	RV	CESC	TCGA-EX-A3L1-01A	DYNC2H1	chr11	103229087	+	ENDOD1	chr11	94861541	+
Frame-shit	ENST00000375735	ENST00000263468		TCGA	RV	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103229087	+	KIAA1377	chr11	101863509	+
Frame-shit	ENST00000375735	ENST00000537689		TCGA	RV	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103229087	+	KIAA1377	chr11	101863509	+
intron-3CDS	ENST00000334267	ENST00000263468		TCGA	RV	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103229087	+	KIAA1377	chr11	101863509	+
intron-3CDS	ENST00000334267	ENST00000537689		TCGA	RV	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103229087	+	KIAA1377	chr11	101863509	+
Frame-shit	ENST00000398093	ENST00000263468		TCGA	RV	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103229087	+	KIAA1377	chr11	101863509	+
Frame-shit	ENST00000398093	ENST00000537689		TCGA	RV	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103229087	+	KIAA1377	chr11	101863509	+
5CDS-5UTR	ENST00000330394	ENST00000302632		TCGA	RV	CESC	TCGA-C5-A7UH-01A	EPHB3	chr3	184280141	+	P2RY12	chr3	151058548	-
Frame-shit	ENST00000301607	ENST00000307877		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000301607	ENST00000539137		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000301607	ENST00000355113		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000301607	ENST00000602720		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000301607	ENST00000542536		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
Frame-shit	ENST00000586740	ENST00000307877		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000586740	ENST00000539137		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000586740	ENST00000355113		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000586740	ENST00000602720		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-intron	ENST00000586740	ENST00000542536		TCGA	RV	CESC	TCGA-HM-A6W2-06A	EVPL	chr17	74023182	-	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000368026	ENST00000368020		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000368026	ENST00000368021		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000368026	ENST00000435396		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000368026	ENST00000368019		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
3UTR-5UTR	ENST00000289779	ENST00000368020		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
3UTR-5UTR	ENST00000289779	ENST00000368021		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
3UTR-5UTR	ENST00000289779	ENST00000435396		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
3UTR-5UTR	ENST00000289779	ENST00000368019		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000537746	ENST00000368020		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000537746	ENST00000368021		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000537746	ENST00000435396		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
5CDS-5UTR	ENST00000537746	ENST00000368019		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
intron-5UTR	ENST00000472573	ENST00000368020		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
intron-5UTR	ENST00000472573	ENST00000368021		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
intron-5UTR	ENST00000472573	ENST00000435396		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
intron-5UTR	ENST00000472573	ENST00000368019		TCGA	RV	CESC	TCGA-C5-A7CO-01A	F11R	chr1	160990800	-	USF1	chr1	161013150	-
Frame-shit	ENST00000375771	ENST00000445597		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000375771	ENST00000430092		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000375771	ENST00000439375		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375771	ENST00000400952		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375771	ENST00000366849		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375771	ENST00000366850		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375771	ENST00000498360		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375771	ENST00000366848		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000375766	ENST00000445597		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000375766	ENST00000430092		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000375766	ENST00000439375		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375766	ENST00000400952		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375766	ENST00000366849		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375766	ENST00000366850		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375766	ENST00000498360		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000375766	ENST00000366848		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000400773	ENST00000445597		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000400773	ENST00000430092		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000400773	ENST00000439375		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000400773	ENST00000400952		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000400773	ENST00000366849		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000400773	ENST00000366850		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000400773	ENST00000498360		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000400773	ENST00000366848		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
In-frame	ENST00000441801	ENST00000445597		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
In-frame	ENST00000441801	ENST00000430092		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
In-frame	ENST00000441801	ENST00000439375		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000441801	ENST00000400952		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000441801	ENST00000366849		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000441801	ENST00000366850		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000441801	ENST00000498360		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000441801	ENST00000366848		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000332305	ENST00000445597		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000332305	ENST00000430092		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000332305	ENST00000439375		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000332305	ENST00000400952		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000332305	ENST00000366849		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000332305	ENST00000366850		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000332305	ENST00000498360		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
5CDS-intron	ENST00000332305	ENST00000366848		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-3CDS	ENST00000509138	ENST00000445597		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-3CDS	ENST00000509138	ENST00000430092		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-3CDS	ENST00000509138	ENST00000439375		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-intron	ENST00000509138	ENST00000400952		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-intron	ENST00000509138	ENST00000366849		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-intron	ENST00000509138	ENST00000366850		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-intron	ENST00000509138	ENST00000498360		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
intron-intron	ENST00000509138	ENST00000366848		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FBLIM1	chr1	16101291	+	DNAH14	chr1	225418775	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	CESC	TCGA-LP-A7HU-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
intron-3CDS	ENST00000492622	ENST00000267163		TCGA	RV	CESC	TCGA-C5-A3HE-01A	FNDC3A	chr13	49551053	+	RB1	chr13	48881416	+
intron-intron	ENST00000492622	ENST00000484879		TCGA	RV	CESC	TCGA-C5-A3HE-01A	FNDC3A	chr13	49551053	+	RB1	chr13	48881416	+
5UTR-3CDS	ENST00000541916	ENST00000267163		TCGA	RV	CESC	TCGA-C5-A3HE-01A	FNDC3A	chr13	49551053	+	RB1	chr13	48881416	+
5UTR-intron	ENST00000541916	ENST00000484879		TCGA	RV	CESC	TCGA-C5-A3HE-01A	FNDC3A	chr13	49551053	+	RB1	chr13	48881416	+
intron-3CDS	ENST00000398316	ENST00000267163		TCGA	RV	CESC	TCGA-C5-A3HE-01A	FNDC3A	chr13	49551053	+	RB1	chr13	48881416	+
intron-intron	ENST00000398316	ENST00000484879		TCGA	RV	CESC	TCGA-C5-A3HE-01A	FNDC3A	chr13	49551053	+	RB1	chr13	48881416	+
5UTR-3CDS	ENST00000318789	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000318789	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000318789	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-5UTR	ENST00000318789	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000475937	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000475937	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000475937	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-5UTR	ENST00000475937	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000493089	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000493089	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000493089	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-5UTR	ENST00000493089	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000484350	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000484350	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000484350	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-5UTR	ENST00000484350	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000318779	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000318779	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-3CDS	ENST00000318779	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
5UTR-5UTR	ENST00000318779	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000491238	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000491238	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000491238	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-5UTR	ENST00000491238	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000498215	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000498215	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000498215	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-5UTR	ENST00000498215	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000468577	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000468577	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000468577	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-5UTR	ENST00000468577	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000472382	ENST00000415609		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000472382	ENST00000349511		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-3CDS	ENST00000472382	ENST00000361055		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
intron-5UTR	ENST00000472382	ENST00000540295		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69112654	-
In-frame	ENST00000251287	ENST00000286195		TCGA	RV	CESC	TCGA-C5-A2LZ-01A	HCN2	chr19	590577	+	ALS2CR11	chr2	202412333	-
In-frame	ENST00000251287	ENST00000439802		TCGA	RV	CESC	TCGA-C5-A2LZ-01A	HCN2	chr19	590577	+	ALS2CR11	chr2	202412333	-
In-frame	ENST00000251287	ENST00000439140		TCGA	RV	CESC	TCGA-C5-A2LZ-01A	HCN2	chr19	590577	+	ALS2CR11	chr2	202412333	-
5CDS-intron	ENST00000251287	ENST00000482942		TCGA	RV	CESC	TCGA-C5-A2LZ-01A	HCN2	chr19	590577	+	ALS2CR11	chr2	202412333	-
5CDS-intron	ENST00000251287	ENST00000450242		TCGA	RV	CESC	TCGA-C5-A2LZ-01A	HCN2	chr19	590577	+	ALS2CR11	chr2	202412333	-
In-frame	ENST00000420083	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000420083	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000449870	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000449870	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000318511	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000318511	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000407004	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000407004	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000589998	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000589998	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000250241	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000250241	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000592763	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000592763	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000588657	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000588657	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000590261	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000590261	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
intron-3CDS	ENST00000586544	ENST00000590923		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
intron-3CDS	ENST00000586544	ENST00000250244		TCGA	RV	CESC	TCGA-JW-A852-01A	ILF3	chr19	10782211	+	AP1M2	chr19	10689639	-
In-frame	ENST00000167586	ENST00000379802		TCGA	RV	CESC	TCGA-IR-A3LL-01A	KRT14	chr17	39738531	-	DSP	chr6	7575528	+
In-frame	ENST00000167586	ENST00000418664		TCGA	RV	CESC	TCGA-IR-A3LL-01A	KRT14	chr17	39738531	-	DSP	chr6	7575528	+
5UTR-3CDS	ENST00000344686	ENST00000334527		TCGA	RV	CESC	TCGA-R2-A69V-01A	MAP3K14	chr17	43366602	-	NDEL1	chr17	8370248	+
5UTR-intron	ENST00000344686	ENST00000299734		TCGA	RV	CESC	TCGA-R2-A69V-01A	MAP3K14	chr17	43366602	-	NDEL1	chr17	8370248	+
5UTR-intron	ENST00000344686	ENST00000585098		TCGA	RV	CESC	TCGA-R2-A69V-01A	MAP3K14	chr17	43366602	-	NDEL1	chr17	8370248	+
5UTR-intron	ENST00000344686	ENST00000380025		TCGA	RV	CESC	TCGA-R2-A69V-01A	MAP3K14	chr17	43366602	-	NDEL1	chr17	8370248	+
5UTR-intron	ENST00000344686	ENST00000402554		TCGA	RV	CESC	TCGA-R2-A69V-01A	MAP3K14	chr17	43366602	-	NDEL1	chr17	8370248	+
5UTR-intron	ENST00000344686	ENST00000583066		TCGA	RV	CESC	TCGA-R2-A69V-01A	MAP3K14	chr17	43366602	-	NDEL1	chr17	8370248	+
In-frame	ENST00000354577	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
In-frame	ENST00000354577	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
In-frame	ENST00000354577	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
5CDS-5UTR	ENST00000354577	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000403834	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000403834	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000403834	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000403834	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368068	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368068	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368068	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000368068	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000479213	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000479213	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000479213	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000479213	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
In-frame	ENST00000368060	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
In-frame	ENST00000368060	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
In-frame	ENST00000368060	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
5CDS-5UTR	ENST00000368060	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368058	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368058	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368058	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000368058	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000545957	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000545957	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000545957	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000545957	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368053	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368053	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000368053	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000368053	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000540546	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000540546	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000540546	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000540546	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000539158	ENST00000327087		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000539158	ENST00000546188		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-3CDS	ENST00000539158	ENST00000356134		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
intron-5UTR	ENST00000539158	ENST00000538154		TCGA	RV	CESC	TCGA-Q1-A5R2-01A	MED23	chr6	131908849	-	ANO2	chr12	5841796	-
5CDS-5UTR	ENST00000341520	ENST00000328631		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000340879		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000432678		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000431721		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000449610		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000413298		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000450045		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000446860		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000417896		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000443964		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000436134		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000341520	ENST00000453202		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000328631		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000340879		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000432678		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000431721		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000449610		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000413298		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000450045		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000446860		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000417896		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000443964		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000436134		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000416649	ENST00000453202		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000328631		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000340879		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000432678		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000431721		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000449610		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000413298		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000450045		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000446860		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000417896		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000443964		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000436134		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000294129	ENST00000453202		TCGA	RV	CESC	TCGA-UC-A7PF-01A	NCKIPSD	chr3	48715997	-	IP6K2	chr3	48732854	-
Frame-shit	ENST00000323851	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
Frame-shit	ENST00000354944	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
Frame-shit	ENST00000521414	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
Frame-shit	ENST00000537882	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
Frame-shit	ENST00000414097	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
intron-3CDS	ENST00000518176	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
intron-3CDS	ENST00000522476	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
intron-3CDS	ENST00000518066	ENST00000336314		TCGA	RV	CESC	TCGA-JW-A5VL-01A	NDRG1	chr8	134249419	-	LARP1	chr5	154188019	+
Frame-shit	ENST00000305921	ENST00000269127		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PPM1D	chr17	58678247	+	C17orf64	chr17	58506723	+
Frame-shit	ENST00000368738	ENST00000451292		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000368738	ENST00000377797		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000368738	ENST00000445265		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000368738	ENST00000323668		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000368738	ENST00000439160		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000368738	ENST00000394269		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000368738	ENST00000504761		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000368738	ENST00000513346		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000368738	ENST00000506063		TCGA	RV	CESC	TCGA-MA-AA3X-01A	S100A9	chr1	153333503	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000356260	ENST00000513238		TCGA	RV	CESC	TCGA-C5-A8XH-01A	SDAD1	chr4	76911905	-	PARM1	chr4	75937635	+
5CDS-intron	ENST00000356260	ENST00000307428		TCGA	RV	CESC	TCGA-C5-A8XH-01A	SDAD1	chr4	76911905	-	PARM1	chr4	75937635	+
5CDS-intron	ENST00000395711	ENST00000513238		TCGA	RV	CESC	TCGA-C5-A8XH-01A	SDAD1	chr4	76911905	-	PARM1	chr4	75937635	+
5CDS-intron	ENST00000395711	ENST00000307428		TCGA	RV	CESC	TCGA-C5-A8XH-01A	SDAD1	chr4	76911905	-	PARM1	chr4	75937635	+
intron-intron	ENST00000513089	ENST00000513238		TCGA	RV	CESC	TCGA-C5-A8XH-01A	SDAD1	chr4	76911905	-	PARM1	chr4	75937635	+
intron-intron	ENST00000513089	ENST00000307428		TCGA	RV	CESC	TCGA-C5-A8XH-01A	SDAD1	chr4	76911905	-	PARM1	chr4	75937635	+
5CDS-intron	ENST00000270792	ENST00000354817		TCGA	RV	CESC	TCGA-EX-A1H5-01A	SH3BGRL3	chr1	26608007	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000270792	ENST00000527202		TCGA	RV	CESC	TCGA-EX-A1H5-01A	SH3BGRL3	chr1	26608007	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000270792	ENST00000532502		TCGA	RV	CESC	TCGA-EX-A1H5-01A	SH3BGRL3	chr1	26608007	+	FAR1	chr11	13744912	+
intron-intron	ENST00000319041	ENST00000354817		TCGA	RV	CESC	TCGA-EX-A1H5-01A	SH3BGRL3	chr1	26608007	+	FAR1	chr11	13744912	+
intron-intron	ENST00000319041	ENST00000527202		TCGA	RV	CESC	TCGA-EX-A1H5-01A	SH3BGRL3	chr1	26608007	+	FAR1	chr11	13744912	+
intron-intron	ENST00000319041	ENST00000532502		TCGA	RV	CESC	TCGA-EX-A1H5-01A	SH3BGRL3	chr1	26608007	+	FAR1	chr11	13744912	+
Frame-shit	ENST00000262613	ENST00000340415		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
Frame-shit	ENST00000262613	ENST00000402449		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000528438		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392615		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392614		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392613		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392612		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392610		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
Frame-shit	ENST00000413388	ENST00000340415		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
Frame-shit	ENST00000413388	ENST00000402449		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000528438		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392615		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392614		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392613		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392612		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392610		TCGA	RV	CESC	TCGA-VS-A9V0-01A	SLC9A3R1	chr17	72759659	+	RAB37	chr17	72725395	+
intron-3CDS	ENST00000578861	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
intron-intron	ENST00000578861	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
intron-intron	ENST00000578861	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
intron-intron	ENST00000578861	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
intron-intron	ENST00000578861	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
intron-5UTR	ENST00000578861	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
Frame-shit	ENST00000580219	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000580219	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000580219	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000580219	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000580219	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000580219	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
Frame-shit	ENST00000452859	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000452859	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000452859	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000452859	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000452859	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000452859	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
Frame-shit	ENST00000393405	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000393405	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000393405	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000393405	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000393405	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000393405	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
Frame-shit	ENST00000439357	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000439357	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000439357	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000439357	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000439357	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000439357	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
Frame-shit	ENST00000359238	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000359238	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000359238	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000359238	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000359238	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000359238	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
Frame-shit	ENST00000582104	ENST00000394126		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000582104	ENST00000356271		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000582104	ENST00000394128		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000582104	ENST00000394127		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-intron	ENST00000582104	ENST00000501516		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
5CDS-5UTR	ENST00000582104	ENST00000479829		TCGA	RV	CESC	TCGA-4J-AA1J-01A	SNX11	chr17	46196548	+	MED24	chr17	38192407	-
In-frame	ENST00000269033	ENST00000261714		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000269033	ENST00000394819		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000269033	ENST00000582669		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000540801	ENST00000261714		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000540801	ENST00000394819		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000540801	ENST00000582669		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
intron-3CDS	ENST00000324677	ENST00000261714		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
intron-3CDS	ENST00000324677	ENST00000394819		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
intron-5UTR	ENST00000324677	ENST00000582669		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
Frame-shit	ENST00000582084	ENST00000261714		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
Frame-shit	ENST00000582084	ENST00000394819		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000582084	ENST00000582669		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000590153	ENST00000261714		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000590153	ENST00000394819		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000590153	ENST00000582669		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000579954	ENST00000261714		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000579954	ENST00000394819		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000579954	ENST00000582669		TCGA	RV	CESC	TCGA-EA-A556-01A	SSH2	chr17	28256956	-	BLMH	chr17	28601215	-
In-frame	ENST00000419617	ENST00000343709		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
In-frame	ENST00000419617	ENST00000448384		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
5CDS-intron	ENST00000419617	ENST00000521519		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
Frame-shit	ENST00000523601	ENST00000343709		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
Frame-shit	ENST00000523601	ENST00000448384		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
5CDS-intron	ENST00000523601	ENST00000521519		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
intron-3CDS	ENST00000521768	ENST00000343709		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
intron-3CDS	ENST00000521768	ENST00000448384		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
intron-intron	ENST00000521768	ENST00000521519		TCGA	RV	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92212841	+
5UTR-intron	ENST00000377897	ENST00000311713		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000377897	ENST00000278856		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000529106		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000525239		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000525752		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000377897	ENST00000540620		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000311713		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000278856		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000529106		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000525239		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000525752		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000540620		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000311713		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000278856		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000529106		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000525239		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000525752		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000540620		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000311713		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000278856		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000529106		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000525239		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000525752		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000540620		TCGA	RV	CESC	TCGA-VS-A9U6-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
In-frame	ENST00000221543	ENST00000418929		TCGA	RV	CESC	TCGA-C5-A7X3-01A	TBC1D17	chr19	50390830	+	PRR12	chr19	50117790	+
In-frame	ENST00000535102	ENST00000418929		TCGA	RV	CESC	TCGA-C5-A7X3-01A	TBC1D17	chr19	50390830	+	PRR12	chr19	50117790	+
intron-3CDS	ENST00000598789	ENST00000418929		TCGA	RV	CESC	TCGA-C5-A7X3-01A	TBC1D17	chr19	50390830	+	PRR12	chr19	50117790	+
5UTR-3CDS	ENST00000340513	ENST00000253381		TCGA	RV	CESC	TCGA-VS-A9UP-01A	TPX2	chr20	30327424	+	DEFB118	chr20	29960660	+
5UTR-3CDS	ENST00000300403	ENST00000253381		TCGA	RV	CESC	TCGA-VS-A9UP-01A	TPX2	chr20	30327424	+	DEFB118	chr20	29960660	+
5CDS-5UTR	ENST00000399410	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399410	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399410	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399410	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-intron	ENST00000399410	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000349029	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000349029	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000349029	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000349029	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-intron	ENST00000349029	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000351154	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000351154	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000351154	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000351154	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-intron	ENST00000351154	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399408	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399408	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399408	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000399408	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-intron	ENST00000399408	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000345148	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000345148	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000345148	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000345148	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-intron	ENST00000345148	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000346370	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000346370	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000346370	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-5UTR	ENST00000346370	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
5CDS-intron	ENST00000346370	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
intron-5UTR	ENST00000576557	ENST00000396353		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
intron-5UTR	ENST00000576557	ENST00000396355		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
intron-5UTR	ENST00000576557	ENST00000396354		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
intron-5UTR	ENST00000576557	ENST00000342673		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
intron-intron	ENST00000576557	ENST00000571896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	ABCC1	chr16	16110478	+	NDE1	chr16	15758593	+
intron-5UTR	ENST00000464611	ENST00000264335		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000464611	ENST00000571732		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000464611	ENST00000573026		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000464611	ENST00000575977		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000464611	ENST00000498643		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000331789	ENST00000264335		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000331789	ENST00000571732		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000331789	ENST00000573026		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000331789	ENST00000575977		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000331789	ENST00000498643		TCGA	RV	CESC	TCGA-EA-A5FO-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000375019	ENST00000259400		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-5UTR	ENST00000375019	ENST00000525640		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-5UTR	ENST00000375019	ENST00000534052		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-intron	ENST00000375019	ENST00000525847		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-5UTR	ENST00000375018	ENST00000259400		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-5UTR	ENST00000375018	ENST00000525640		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-5UTR	ENST00000375018	ENST00000534052		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-intron	ENST00000375018	ENST00000525847		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-5UTR	ENST00000353234	ENST00000259400		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-5UTR	ENST00000353234	ENST00000525640		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-5UTR	ENST00000353234	ENST00000534052		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5CDS-intron	ENST00000353234	ENST00000525847		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-5UTR	ENST00000540940	ENST00000259400		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-5UTR	ENST00000540940	ENST00000525640		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-5UTR	ENST00000540940	ENST00000534052		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
intron-intron	ENST00000540940	ENST00000525847		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000471846	ENST00000259400		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000471846	ENST00000525640		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000471846	ENST00000534052		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
5UTR-intron	ENST00000471846	ENST00000525847		TCGA	RV	CESC	TCGA-JX-A3Q8-01A	ANKS6	chr9	101558415	-	STX17	chr9	102677460	+
Frame-shit	ENST00000272217	ENST00000367274		TCGA	RV	CESC	TCGA-EA-A3Y4-01A	ARL8A	chr1	202113578	-	UBE2T	chr1	202304186	-
intron-3CDS	ENST00000486225	ENST00000367274		TCGA	RV	CESC	TCGA-EA-A3Y4-01A	ARL8A	chr1	202113578	-	UBE2T	chr1	202304186	-
5CDS-intron	ENST00000323116	ENST00000446828		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-5UTR	ENST00000323116	ENST00000424227		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000323116	ENST00000443863		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000323116	ENST00000535426		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-5UTR	ENST00000323116	ENST00000265026		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000323116	ENST00000448876		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000323116	ENST00000454237		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000323116	ENST00000438798		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000493826	ENST00000446828		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-5UTR	ENST00000493826	ENST00000424227		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000493826	ENST00000443863		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000493826	ENST00000535426		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-5UTR	ENST00000493826	ENST00000265026		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000493826	ENST00000448876		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000493826	ENST00000454237		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
5CDS-intron	ENST00000493826	ENST00000438798		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-intron	ENST00000482794	ENST00000446828		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-5UTR	ENST00000482794	ENST00000424227		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-intron	ENST00000482794	ENST00000443863		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-intron	ENST00000482794	ENST00000535426		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-5UTR	ENST00000482794	ENST00000265026		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-intron	ENST00000482794	ENST00000448876		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-intron	ENST00000482794	ENST00000454237		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
intron-intron	ENST00000482794	ENST00000438798		TCGA	RV	CESC	TCGA-DS-A1OC-01A	ATP11B	chr3	182545997	+	MAP3K13	chr3	185146285	+
In-frame	ENST00000357084	ENST00000340394		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000357084	ENST00000325215		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000357084	ENST00000382686		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000357084	ENST00000395547		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000357084	ENST00000336783		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000357084	ENST00000564304		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000357084	ENST00000570200		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
5CDS-3UTR	ENST00000357084	ENST00000565845		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000340394		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000325215		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000382686		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000395547		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000336783		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000564304		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000395503	ENST00000570200		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
5CDS-3UTR	ENST00000395503	ENST00000565845		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000340394		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000325215		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000382686		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000395547		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000336783		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000564304		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000536376	ENST00000570200		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
5CDS-3UTR	ENST00000536376	ENST00000565845		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000340394		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000325215		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000382686		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000395547		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000336783		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000564304		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3CDS	ENST00000565042	ENST00000570200		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
intron-3UTR	ENST00000565042	ENST00000565845		TCGA	RV	CESC	TCGA-HM-A6W2-06A	ATP2A1	chr16	28912237	+	ATXN2L	chr16	28846379	+
In-frame	ENST00000348959	ENST00000547691		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000348959	ENST00000552810		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000348959	ENST00000397838		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000348959	ENST00000309041		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000261173	ENST00000547691		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000261173	ENST00000552810		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000261173	ENST00000397838		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000261173	ENST00000309041		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000359142	ENST00000547691		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000359142	ENST00000552810		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000359142	ENST00000397838		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000359142	ENST00000309041		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000428670	ENST00000547691		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000428670	ENST00000552810		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000428670	ENST00000397838		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000428670	ENST00000309041		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000393164	ENST00000547691		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000393164	ENST00000552810		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000393164	ENST00000397838		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
In-frame	ENST00000393164	ENST00000309041		TCGA	RV	CESC	TCGA-C5-A7CH-01A	ATP2B1	chr12	90010579	-	CEP290	chr12	88478629	-
Frame-shit	ENST00000538010	ENST00000288912		TCGA	RV	CESC	TCGA-VS-A9U5-01A	BCL7A	chr12	122481959	+	WDR66	chr12	122441558	+
5CDS-intron	ENST00000538010	ENST00000397454		TCGA	RV	CESC	TCGA-VS-A9U5-01A	BCL7A	chr12	122481959	+	WDR66	chr12	122441558	+
5CDS-intron	ENST00000538010	ENST00000545752		TCGA	RV	CESC	TCGA-VS-A9U5-01A	BCL7A	chr12	122481959	+	WDR66	chr12	122441558	+
Frame-shit	ENST00000261822	ENST00000288912		TCGA	RV	CESC	TCGA-VS-A9U5-01A	BCL7A	chr12	122481959	+	WDR66	chr12	122441558	+
5CDS-intron	ENST00000261822	ENST00000397454		TCGA	RV	CESC	TCGA-VS-A9U5-01A	BCL7A	chr12	122481959	+	WDR66	chr12	122441558	+
5CDS-intron	ENST00000261822	ENST00000545752		TCGA	RV	CESC	TCGA-VS-A9U5-01A	BCL7A	chr12	122481959	+	WDR66	chr12	122441558	+
Frame-shit	ENST00000373275	ENST00000317135		TCGA	RV	CESC	TCGA-ZJ-AAX4-01A	BRWD3	chrX	80064038	-	LRCH2	chrX	114391230	-
Frame-shit	ENST00000373275	ENST00000538422		TCGA	RV	CESC	TCGA-ZJ-AAX4-01A	BRWD3	chrX	80064038	-	LRCH2	chrX	114391230	-
intron-3CDS	ENST00000473691	ENST00000317135		TCGA	RV	CESC	TCGA-ZJ-AAX4-01A	BRWD3	chrX	80064038	-	LRCH2	chrX	114391230	-
intron-3CDS	ENST00000473691	ENST00000538422		TCGA	RV	CESC	TCGA-ZJ-AAX4-01A	BRWD3	chrX	80064038	-	LRCH2	chrX	114391230	-
5CDS-5UTR	ENST00000397861	ENST00000577830		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000397861	ENST00000407144		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000397861	ENST00000360238		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000397861	ENST00000577840		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000397861	ENST00000578357		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000397862	ENST00000577830		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000397862	ENST00000407144		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000397862	ENST00000360238		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000397862	ENST00000577840		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000397862	ENST00000578357		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000575658	ENST00000577830		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000575658	ENST00000407144		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000575658	ENST00000360238		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000575658	ENST00000577840		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000575658	ENST00000578357		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000487705	ENST00000577830		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
intron-intron	ENST00000487705	ENST00000407144		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000487705	ENST00000360238		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
intron-intron	ENST00000487705	ENST00000577840		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
intron-intron	ENST00000487705	ENST00000578357		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	C17orf67	chr17	54892230	-	CUEDC1	chr17	55963240	-
In-frame	ENST00000577809	ENST00000394670		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
In-frame	ENST00000577809	ENST00000321233		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
In-frame	ENST00000577809	ENST00000394673		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000577809	ENST00000341711		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000577809	ENST00000342555		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000577809	ENST00000577908		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000577809	ENST00000584416		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
In-frame	ENST00000225805	ENST00000394670		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
In-frame	ENST00000225805	ENST00000321233		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
In-frame	ENST00000225805	ENST00000394673		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000225805	ENST00000341711		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000225805	ENST00000342555		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000225805	ENST00000577908		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
5CDS-intron	ENST00000225805	ENST00000584416		TCGA	RV	CESC	TCGA-C5-A8XH-01A	C17orf75	chr17	30660436	-	ZNF207	chr17	30685522	+
Frame-shit	ENST00000269221	ENST00000339486		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
Frame-shit	ENST00000269221	ENST00000581585		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
Frame-shit	ENST00000269221	ENST00000577501		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
intron-3CDS	ENST00000590868	ENST00000339486		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
intron-3CDS	ENST00000590868	ENST00000581585		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
intron-3CDS	ENST00000590868	ENST00000577501		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
intron-3CDS	ENST00000591367	ENST00000339486		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
intron-3CDS	ENST00000591367	ENST00000581585		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
intron-3CDS	ENST00000591367	ENST00000577501		TCGA	RV	CESC	TCGA-VS-A9UB-01A	C18orf8	chr18	21089243	+	RIOK3	chr18	21061136	+
5CDS-5UTR	ENST00000372318	ENST00000262915		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000372375		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000351035		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000372374		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000353126		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000545417		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000330208		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000335430		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000372377		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000361392		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000361400		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-5UTR	ENST00000372318	ENST00000347631		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000361812		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372362		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000531451		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372366		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372365		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372368		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000332628		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372372		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000531816		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000528371		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372369		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000531993		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000361746		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000533933		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000372367		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
5CDS-intron	ENST00000372318	ENST00000461375		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000262915		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000372375		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000351035		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000372374		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000353126		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000545417		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000330208		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000335430		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000372377		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000361392		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000361400		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-5UTR	ENST00000479055	ENST00000347631		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000361812		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372362		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000531451		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372366		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372365		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372368		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000332628		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372372		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000531816		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000528371		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372369		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000531993		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000361746		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000533933		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000372367		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
intron-intron	ENST00000479055	ENST00000461375		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44457676	+	ST3GAL3	chr1	44201904	+
Frame-shit	ENST00000577730	ENST00000254325		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
5CDS-intron	ENST00000577730	ENST00000586913		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
In-frame	ENST00000299345	ENST00000254325		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
5CDS-intron	ENST00000299345	ENST00000586913		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
In-frame	ENST00000577390	ENST00000254325		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
5CDS-intron	ENST00000577390	ENST00000586913		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
In-frame	ENST00000584337	ENST00000254325		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
5CDS-intron	ENST00000584337	ENST00000586913		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
intron-3CDS	ENST00000580044	ENST00000254325		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
intron-intron	ENST00000580044	ENST00000586913		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CDH8	chr16	61935083	-	RFX1	chr19	14083939	-
In-frame	ENST00000443236	ENST00000336915		TCGA	RV	CESC	TCGA-EA-A556-01A	CPAMD8	chr19	17049205	-	SKAP1	chr17	46239931	-
In-frame	ENST00000443236	ENST00000584924		TCGA	RV	CESC	TCGA-EA-A556-01A	CPAMD8	chr19	17049205	-	SKAP1	chr17	46239931	-
intron-3CDS	ENST00000597335	ENST00000336915		TCGA	RV	CESC	TCGA-EA-A556-01A	CPAMD8	chr19	17049205	-	SKAP1	chr17	46239931	-
intron-3CDS	ENST00000597335	ENST00000584924		TCGA	RV	CESC	TCGA-EA-A556-01A	CPAMD8	chr19	17049205	-	SKAP1	chr17	46239931	-
intron-3CDS	ENST00000388925	ENST00000336915		TCGA	RV	CESC	TCGA-EA-A556-01A	CPAMD8	chr19	17049205	-	SKAP1	chr17	46239931	-
intron-3CDS	ENST00000388925	ENST00000584924		TCGA	RV	CESC	TCGA-EA-A556-01A	CPAMD8	chr19	17049205	-	SKAP1	chr17	46239931	-
In-frame	ENST00000395326	ENST00000398204		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000395326	ENST00000439864		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000395326	ENST00000398201		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000395326	ENST00000265727		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000395326	ENST00000315984		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000395326	ENST00000398209		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000395326	ENST00000476330		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000431089	ENST00000398204		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000431089	ENST00000439864		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000431089	ENST00000398201		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000431089	ENST00000265727		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000431089	ENST00000315984		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000431089	ENST00000398209		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-intron	ENST00000431089	ENST00000476330		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000398684	ENST00000398204		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000398684	ENST00000439864		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000398684	ENST00000398201		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000398684	ENST00000265727		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000398684	ENST00000315984		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000398684	ENST00000398209		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000398684	ENST00000476330		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000338592	ENST00000398204		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000338592	ENST00000439864		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000338592	ENST00000398201		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000338592	ENST00000265727		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000338592	ENST00000315984		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
In-frame	ENST00000338592	ENST00000398209		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000338592	ENST00000476330		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000415001	ENST00000398204		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000415001	ENST00000439864		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000415001	ENST00000398201		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000415001	ENST00000265727		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000415001	ENST00000315984		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000415001	ENST00000398209		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-intron	ENST00000415001	ENST00000476330		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000492264	ENST00000398204		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000492264	ENST00000439864		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000492264	ENST00000398201		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000492264	ENST00000265727		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000492264	ENST00000315984		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-3CDS	ENST00000492264	ENST00000398209		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
intron-intron	ENST00000492264	ENST00000476330		TCGA	RV	CESC	TCGA-C5-A7CM-01A	CRCP	chr7	65579957	+	ADAM22	chr7	87704941	+
Frame-shit	ENST00000428084	ENST00000333850		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
5CDS-intron	ENST00000428084	ENST00000546576		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
intron-3CDS	ENST00000494651	ENST00000333850		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
intron-intron	ENST00000494651	ENST00000546576		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
Frame-shit	ENST00000437633	ENST00000333850		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
5CDS-intron	ENST00000437633	ENST00000546576		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
5UTR-3CDS	ENST00000476846	ENST00000333850		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
5UTR-intron	ENST00000476846	ENST00000546576		TCGA	RV	CESC	TCGA-FU-A3TX-01A	DOCK4	chr7	111846157	-	TPH2	chr12	72366299	+
5UTR-3CDS	ENST00000311172	ENST00000064778		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000311172	ENST00000450446		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000311172	ENST00000356467		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409314	ENST00000064778		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409314	ENST00000450446		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409314	ENST00000356467		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409418	ENST00000064778		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409418	ENST00000450446		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409418	ENST00000356467		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000458644	ENST00000064778		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000458644	ENST00000450446		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000458644	ENST00000356467		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000409853	ENST00000064778		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000409853	ENST00000450446		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000409853	ENST00000356467		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000409263	ENST00000064778		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000409263	ENST00000450446		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000409263	ENST00000356467		TCGA	RV	CESC	TCGA-VS-A8QF-01A	FCHSD2	chr11	72794740	-	FAM168A	chr11	73131044	-
In-frame	ENST00000300784	ENST00000356711		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
In-frame	ENST00000300784	ENST00000251041		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
In-frame	ENST00000300784	ENST00000357550		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
5CDS-intron	ENST00000300784	ENST00000457511		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
5CDS-intron	ENST00000300784	ENST00000467639		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
intron-3CDS	ENST00000572813	ENST00000356711		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
intron-3CDS	ENST00000572813	ENST00000251041		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
intron-3CDS	ENST00000572813	ENST00000357550		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
intron-intron	ENST00000572813	ENST00000457511		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
intron-intron	ENST00000572813	ENST00000467639		TCGA	RV	CESC	TCGA-FU-A3NI-01A	FN3K	chr17	80706853	+	MYO16	chr13	109535407	+
intron-3CDS	ENST00000530927	ENST00000287152		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000394362		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000373213		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000373216		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000229913		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000373215		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000538893		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000541946		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000530927	ENST00000465719		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
In-frame	ENST00000380815	ENST00000287152		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000394362		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000373213		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000373216		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000229913		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000373215		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000538893		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000541946		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
5CDS-intron	ENST00000380815	ENST00000465719		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-3CDS	ENST00000467288	ENST00000287152		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000394362		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000373213		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000373216		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000229913		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000373215		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000538893		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000541946		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
intron-intron	ENST00000467288	ENST00000465719		TCGA	RV	CESC	TCGA-DG-A2KL-01A	GMDS	chr6	2245555	-	KIF6	chr6	39688587	-
In-frame	ENST00000539243	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000539243	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000539243	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000539243	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000313093	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000313093	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000313093	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000313093	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000536472	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000536472	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000536472	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000536472	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000590214	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000590214	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000590214	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000590214	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000586866	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000586866	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000586866	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000586866	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000543365	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000543365	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000543365	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000543365	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
intron-3CDS	ENST00000592335	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
intron-3CDS	ENST00000592335	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
intron-3CDS	ENST00000592335	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
intron-intron	ENST00000592335	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000590577	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000590577	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
In-frame	ENST00000590577	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000590577	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
3UTR-3CDS	ENST00000591169	ENST00000263094		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
3UTR-3CDS	ENST00000591169	ENST00000433129		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
3UTR-3CDS	ENST00000591169	ENST00000435683		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
3UTR-intron	ENST00000591169	ENST00000533574		TCGA	RV	CESC	TCGA-C5-A7CO-01A	HMHA1	chr19	1083352	+	ABCA7	chr19	1061781	+
5CDS-5UTR	ENST00000296585	ENST00000514342		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-5UTR	ENST00000296585	ENST00000505697		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000511363		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000503750		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000281631		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000514067		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000505554		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000513738		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000296585	ENST00000503665		TCGA	RV	CESC	TCGA-VS-A8EI-01A	ITGA2	chr5	52285362	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000285737	ENST00000250457		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000285737	ENST00000553215		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000285737	ENST00000547327		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000285737	ENST00000557521		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000535754	ENST00000250457		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000535754	ENST00000553215		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000535754	ENST00000547327		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-intron	ENST00000535754	ENST00000557521		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
intron-intron	ENST00000564259	ENST00000250457		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
intron-intron	ENST00000564259	ENST00000553215		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
intron-intron	ENST00000564259	ENST00000547327		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
intron-intron	ENST00000564259	ENST00000557521		TCGA	RV	CESC	TCGA-FU-A3TX-01A	LONP2	chr16	48304185	+	EGLN3	chr14	34638852	-
5CDS-5UTR	ENST00000543482	ENST00000569795		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000543482	ENST00000413097		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000543482	ENST00000260376		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000543482	ENST00000287196		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-5UTR	ENST00000331706	ENST00000569795		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000331706	ENST00000413097		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000331706	ENST00000260376		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000331706	ENST00000287196		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-5UTR	ENST00000451018	ENST00000569795		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000451018	ENST00000413097		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000451018	ENST00000260376		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000451018	ENST00000287196		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-5UTR	ENST00000357742	ENST00000569795		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000357742	ENST00000413097		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000357742	ENST00000260376		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000357742	ENST00000287196		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-5UTR	ENST00000557742	ENST00000569795		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000557742	ENST00000413097		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000557742	ENST00000260376		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
5CDS-intron	ENST00000557742	ENST00000287196		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
intron-5UTR	ENST00000449432	ENST00000569795		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
intron-intron	ENST00000449432	ENST00000413097		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
intron-intron	ENST00000449432	ENST00000260376		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
intron-intron	ENST00000449432	ENST00000287196		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MCTP2	chr15	94901841	+	PARP6	chr15	72563628	-
Frame-shit	ENST00000291041	ENST00000415766		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000291041	ENST00000561639		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000291041	ENST00000388833		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
5CDS-intron	ENST00000291041	ENST00000562321		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
intron-3CDS	ENST00000575198	ENST00000415766		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
intron-3CDS	ENST00000575198	ENST00000561639		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
intron-3CDS	ENST00000575198	ENST00000388833		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
intron-intron	ENST00000575198	ENST00000562321		TCGA	RV	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67858486	+
5CDS-intron	ENST00000424085	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000424085	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000424085	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000424085	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000424085	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000257075	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000257075	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000257075	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000257075	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000257075	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373747	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000373747	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373747	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373747	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373747	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000426105	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000426105	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000426105	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000426105	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000426105	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000440538	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000440538	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000440538	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000440538	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000440538	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373741	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000373741	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373741	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373741	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373741	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000423018	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000423018	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000423018	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000423018	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000423018	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373742	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-5UTR	ENST00000373742	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373742	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373742	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
5CDS-intron	ENST00000373742	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
intron-intron	ENST00000490546	ENST00000356415		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
intron-5UTR	ENST00000490546	ENST00000436150		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
intron-intron	ENST00000490546	ENST00000369709		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
intron-intron	ENST00000490546	ENST00000545460		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
intron-intron	ENST00000490546	ENST00000494982		TCGA	RV	CESC	TCGA-BI-A0VR-01A	PUM1	chr1	31501643	-	RAP1A	chr1	112170092	+
Frame-shit	ENST00000356260	ENST00000264888		TCGA	RV	CESC	TCGA-FU-A23L-01A	SDAD1	chr4	76902525	-	CXCL9	chr4	76927427	-
Frame-shit	ENST00000395711	ENST00000264888		TCGA	RV	CESC	TCGA-FU-A23L-01A	SDAD1	chr4	76902525	-	CXCL9	chr4	76927427	-
intron-3CDS	ENST00000513089	ENST00000264888		TCGA	RV	CESC	TCGA-FU-A23L-01A	SDAD1	chr4	76902525	-	CXCL9	chr4	76927427	-
Frame-shit	ENST00000268989	ENST00000344595		TCGA	RV	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2246914	+	SRR	chr17	2224600	+
5CDS-intron	ENST00000268989	ENST00000576848		TCGA	RV	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2246914	+	SRR	chr17	2224600	+
Frame-shit	ENST00000426855	ENST00000344595		TCGA	RV	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2246914	+	SRR	chr17	2224600	+
5CDS-intron	ENST00000426855	ENST00000576848		TCGA	RV	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2246914	+	SRR	chr17	2224600	+
Frame-shit	ENST00000574563	ENST00000344595		TCGA	RV	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2246914	+	SRR	chr17	2224600	+
5CDS-intron	ENST00000574563	ENST00000576848		TCGA	RV	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2246914	+	SRR	chr17	2224600	+
intron-5UTR	ENST00000427662	ENST00000224950		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000427662	ENST00000369764		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000369774	ENST00000224950		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000369774	ENST00000369764		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000355946	ENST00000224950		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000355946	ENST00000369764		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000315994	ENST00000224950		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000315994	ENST00000369764		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000540321	ENST00000224950		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000540321	ENST00000369764		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000538130	ENST00000224950		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000538130	ENST00000369764		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	CESC	TCGA-EK-A2PG-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105677414	-
Frame-shit	ENST00000217381	ENST00000409299		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SNTA1	chr20	32026647	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000217381	ENST00000344022		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SNTA1	chr20	32026647	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000217381	ENST00000217398		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SNTA1	chr20	32026647	-	PXMP4	chr20	32302542	-
In-frame	ENST00000355327	ENST00000544974		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000355327	ENST00000560369		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000355327	ENST00000260382		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000355327	ENST00000443425		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
5CDS-5UTR	ENST00000355327	ENST00000560691		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
5CDS-3UTR	ENST00000355327	ENST00000436542		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
5CDS-intron	ENST00000355327	ENST00000560158		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000261862	ENST00000544974		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000261862	ENST00000560369		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000261862	ENST00000260382		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000261862	ENST00000443425		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
5CDS-5UTR	ENST00000261862	ENST00000560691		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
5CDS-3UTR	ENST00000261862	ENST00000436542		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
5CDS-intron	ENST00000261862	ENST00000560158		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000544974		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000560369		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000260382		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000357769	ENST00000443425		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-5UTR	ENST00000357769	ENST00000560691		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3UTR	ENST00000357769	ENST00000436542		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-intron	ENST00000357769	ENST00000560158		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000544974		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000560369		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000260382		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3CDS	ENST00000567838	ENST00000443425		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-5UTR	ENST00000567838	ENST00000560691		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-3UTR	ENST00000567838	ENST00000436542		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
intron-intron	ENST00000567838	ENST00000560158		TCGA	RV	CESC	TCGA-C5-A2LT-01A	THSD4	chr15	71507738	+	LRRC49	chr15	71256124	+
In-frame	ENST00000526343	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000526343	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000526343	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000526343	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000526343	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000526343	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000526343	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000282441	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000282441	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000282441	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000282441	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000282441	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000282441	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000282441	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000537274	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000537274	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000537274	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000537274	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000537274	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000537274	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000537274	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000345877	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000345877	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000345877	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000345877	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000345877	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000345877	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000345877	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000531439	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
In-frame	ENST00000531439	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000531439	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000531439	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000531439	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000531439	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
5CDS-5UTR	ENST00000531439	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-3CDS	ENST00000524575	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-3CDS	ENST00000524575	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000524575	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000524575	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000524575	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000524575	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000524575	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-3CDS	ENST00000528834	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-3CDS	ENST00000528834	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000528834	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000528834	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000528834	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000528834	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
intron-5UTR	ENST00000528834	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	YAP1	chr11	101981900	+	SS18	chr18	23667541	-
3UTR-3CDS	ENST00000410075	ENST00000244230		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
3UTR-3CDS	ENST00000410075	ENST00000498451		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
3UTR-3UTR	ENST00000410075	ENST00000468427		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000377802	ENST00000244230		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000377802	ENST00000498451		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3UTR	ENST00000377802	ENST00000468427		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000355812	ENST00000244230		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000355812	ENST00000498451		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3UTR	ENST00000355812	ENST00000468427		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000409544	ENST00000244230		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000409544	ENST00000498451		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3UTR	ENST00000409544	ENST00000468427		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000264447	ENST00000244230		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000264447	ENST00000498451		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3UTR	ENST00000264447	ENST00000468427		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000409407	ENST00000244230		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000409407	ENST00000498451		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3UTR	ENST00000409407	ENST00000468427		TCGA	RV	CESC	TCGA-EA-A50E-01A	ZNF638	chr2	71503884	+	MPHOSPH10	chr2	71360028	+
intron-3CDS	ENST00000427569	ENST00000443584		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000427569	ENST00000449996		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000427569	ENST00000262406		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-intron	ENST00000427569	ENST00000577186		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000416949	ENST00000443584		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000416949	ENST00000449996		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000416949	ENST00000262406		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
intron-intron	ENST00000416949	ENST00000577186		TCGA	RV	CESC	TCGA-4J-AA1J-01A	AARSD1	chr17	41131187	-	RGS9	chr17	63206606	+
Frame-shit	ENST00000278359	ENST00000278379		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
Frame-shit	ENST00000278359	ENST00000395750		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
Frame-shit	ENST00000278359	ENST00000395753		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
Frame-shit	ENST00000278359	ENST00000606205		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5CDS-5UTR	ENST00000278359	ENST00000479543		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
In-frame	ENST00000395787	ENST00000278379		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
In-frame	ENST00000395787	ENST00000395750		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
In-frame	ENST00000395787	ENST00000395753		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
In-frame	ENST00000395787	ENST00000606205		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5CDS-5UTR	ENST00000395787	ENST00000479543		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5UTR-3CDS	ENST00000527830	ENST00000278379		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5UTR-3CDS	ENST00000527830	ENST00000395750		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5UTR-3CDS	ENST00000527830	ENST00000395753		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5UTR-3CDS	ENST00000527830	ENST00000606205		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
5UTR-5UTR	ENST00000527830	ENST00000479543		TCGA	RV	CESC	TCGA-IR-A3LK-01A	APIP	chr11	34909840	-	SLC1A2	chr11	35287305	-
Frame-shit	ENST00000421832	ENST00000293261		TCGA	RV	CESC	TCGA-EK-A3GM-01A	CTU1	chr19	51607319	-	TMEM143	chr19	48837454	-
Frame-shit	ENST00000421832	ENST00000377431		TCGA	RV	CESC	TCGA-EK-A3GM-01A	CTU1	chr19	51607319	-	TMEM143	chr19	48837454	-
Frame-shit	ENST00000421832	ENST00000435956		TCGA	RV	CESC	TCGA-EK-A3GM-01A	CTU1	chr19	51607319	-	TMEM143	chr19	48837454	-
Frame-shit	ENST00000421832	ENST00000436660		TCGA	RV	CESC	TCGA-EK-A3GM-01A	CTU1	chr19	51607319	-	TMEM143	chr19	48837454	-
Frame-shit	ENST00000421832	ENST00000541566		TCGA	RV	CESC	TCGA-EK-A3GM-01A	CTU1	chr19	51607319	-	TMEM143	chr19	48837454	-
5CDS-intron	ENST00000421832	ENST00000598012		TCGA	RV	CESC	TCGA-EK-A3GM-01A	CTU1	chr19	51607319	-	TMEM143	chr19	48837454	-
Frame-shit	ENST00000254730	ENST00000264977		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000254730	ENST00000490467		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000254730	ENST00000334546		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000254730	ENST00000492624		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000254730	ENST00000469270		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000483457	ENST00000264977		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000483457	ENST00000490467		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000483457	ENST00000334546		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000483457	ENST00000492624		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000483457	ENST00000469270		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000483569	ENST00000264977		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000483569	ENST00000490467		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000483569	ENST00000334546		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000483569	ENST00000492624		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000483569	ENST00000469270		TCGA	RV	CESC	TCGA-VS-A8EJ-01A	EEFSEC	chr3	127983624	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000296933	ENST00000518527		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000296933	ENST00000377360		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000296933	ENST00000328939		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000296933	ENST00000390656		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-5UTR	ENST00000296933	ENST00000520740		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000296933	ENST00000434108		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000296933	ENST00000411494		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000265094	ENST00000518527		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000265094	ENST00000377360		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000265094	ENST00000328939		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000265094	ENST00000390656		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-5UTR	ENST00000265094	ENST00000520740		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000265094	ENST00000434108		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000265094	ENST00000411494		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000393802	ENST00000518527		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000393802	ENST00000377360		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000393802	ENST00000328939		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000393802	ENST00000390656		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-5UTR	ENST00000393802	ENST00000520740		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000393802	ENST00000434108		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
5CDS-intron	ENST00000393802	ENST00000411494		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000425623	ENST00000518527		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000425623	ENST00000377360		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000425623	ENST00000328939		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000425623	ENST00000390656		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-5UTR	ENST00000425623	ENST00000520740		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000425623	ENST00000434108		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000425623	ENST00000411494		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000522891	ENST00000518527		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000522891	ENST00000377360		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000522891	ENST00000328939		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000522891	ENST00000390656		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-5UTR	ENST00000522891	ENST00000520740		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000522891	ENST00000434108		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
intron-intron	ENST00000522891	ENST00000411494		TCGA	RV	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170096503	+
In-frame	ENST00000376959	ENST00000338368		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
In-frame	ENST00000376959	ENST00000314191		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
5CDS-5UTR	ENST00000376959	ENST00000523565		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
Frame-shit	ENST00000391818	ENST00000338368		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
Frame-shit	ENST00000391818	ENST00000314191		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
5CDS-5UTR	ENST00000391818	ENST00000523565		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
Frame-shit	ENST00000474951	ENST00000338368		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
Frame-shit	ENST00000474951	ENST00000314191		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
5CDS-5UTR	ENST00000474951	ENST00000523565		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
In-frame	ENST00000477616	ENST00000338368		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
In-frame	ENST00000477616	ENST00000314191		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
5CDS-5UTR	ENST00000477616	ENST00000523565		TCGA	RV	CESC	TCGA-VS-A8EI-01A	KCNC3	chr19	50823850	-	PRKDC	chr8	48730122	-
Frame-shit	ENST00000372224	ENST00000458657		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372224	ENST00000535358		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000372224	ENST00000444751		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
3UTR-3CDS	ENST00000493027	ENST00000458657		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
3UTR-3CDS	ENST00000493027	ENST00000535358		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
3UTR-3UTR	ENST00000493027	ENST00000444751		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372218	ENST00000458657		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372218	ENST00000535358		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000372218	ENST00000444751		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372222	ENST00000458657		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372222	ENST00000535358		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000372222	ENST00000444751		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372217	ENST00000458657		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372217	ENST00000535358		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000372217	ENST00000444751		TCGA	RV	CESC	TCGA-JW-A5VI-01A	KIF2C	chr1	45219505	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000301653	ENST00000280326		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT16	chr17	39766030	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000301653	ENST00000503026		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT16	chr17	39766030	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000301653	ENST00000515390		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT16	chr17	39766030	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000301653	ENST00000515676		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT16	chr17	39766030	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000301653	ENST00000506600		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT16	chr17	39766030	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000293618	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000293618	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000429001	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000429001	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000398473	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000398473	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000518444	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000518444	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000347328	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000347328	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000522085	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
Frame-shit	ENST00000522085	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
5UTR-3CDS	ENST00000518561	ENST00000301463		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
5UTR-3CDS	ENST00000518561	ENST00000547837		TCGA	RV	CESC	TCGA-HM-A6W2-06A	LARP4	chr12	50794811	+	SPRYD3	chr12	53471045	-
In-frame	ENST00000330636	ENST00000324331		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000330636	ENST00000274680		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
intron-3CDS	ENST00000468929	ENST00000324331		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
intron-3CDS	ENST00000468929	ENST00000274680		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000464010	ENST00000324331		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000464010	ENST00000274680		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000480566	ENST00000324331		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000480566	ENST00000274680		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000500576	ENST00000324331		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
In-frame	ENST00000500576	ENST00000274680		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
intron-3CDS	ENST00000606472	ENST00000324331		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
intron-3CDS	ENST00000606472	ENST00000274680		TCGA	RV	CESC	TCGA-LP-A5U2-01A	LYRM4	chr6	5216851	-	FARS2	chr6	5613402	+
Frame-shit	ENST00000202917	ENST00000543106		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000202917	ENST00000389385		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000202917	ENST00000447659		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000202917	ENST00000551052		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000202917	ENST00000415485		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000202917	ENST00000548866		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000202917	ENST00000420983		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
5CDS-3UTR	ENST00000202917	ENST00000549913		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000543106		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000389385		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000447659		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000551052		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000415485		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000548866		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000445409	ENST00000420983		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
5CDS-3UTR	ENST00000445409	ENST00000549913		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000543106		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000389385		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000447659		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000551052		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000415485		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000548866		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000452357	ENST00000420983		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
5CDS-3UTR	ENST00000452357	ENST00000549913		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000543106		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000389385		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000447659		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000551052		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000415485		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000548866		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
Frame-shit	ENST00000551241	ENST00000420983		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
5CDS-3UTR	ENST00000551241	ENST00000549913		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000543106		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000389385		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000447659		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000551052		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000415485		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000548866		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3CDS	ENST00000553185	ENST00000420983		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
intron-3UTR	ENST00000553185	ENST00000549913		TCGA	RV	CESC	TCGA-VS-A9UB-01A	OAS1	chr12	113349040	+	RPH3A	chr12	113307564	+
5CDS-intron	ENST00000340385	ENST00000513761		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000340385	ENST00000347613		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000340385	ENST00000360642		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000340385	ENST00000504131		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000340385	ENST00000506924		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000470017	ENST00000513761		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000470017	ENST00000347613		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000470017	ENST00000360642		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000470017	ENST00000504131		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000470017	ENST00000506924		TCGA	RV	CESC	TCGA-EA-A3HS-01A	PRDX6	chr1	173457946	+	CLCN3	chr4	170623929	+
5UTR-3CDS	ENST00000398958	ENST00000371092		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000398958	ENST00000271002		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000398958	ENST00000283568		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-5UTR	ENST00000398958	ENST00000461681		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000373833	ENST00000371092		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000373833	ENST00000271002		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000373833	ENST00000283568		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
5UTR-5UTR	ENST00000373833	ENST00000461681		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000373832	ENST00000371092		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000373832	ENST00000271002		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000373832	ENST00000283568		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000373832	ENST00000461681		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000373831	ENST00000371092		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000373831	ENST00000271002		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000373831	ENST00000283568		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000373831	ENST00000461681		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000429051	ENST00000371092		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000429051	ENST00000271002		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000429051	ENST00000283568		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000429051	ENST00000461681		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RCC1	chr1	28834672	+	ITGB3BP	chr1	63920639	-
Frame-shit	ENST00000349703	ENST00000405015		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000349703	ENST00000431489		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000349703	ENST00000354487		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000349703	ENST00000263991		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000349703	ENST00000405289		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5CDS-intron	ENST00000349703	ENST00000496857		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000381897	ENST00000405015		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000381897	ENST00000431489		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000381897	ENST00000354487		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000381897	ENST00000263991		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000381897	ENST00000405289		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5CDS-intron	ENST00000381897	ENST00000496857		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5UTR-3CDS	ENST00000418436	ENST00000405015		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5UTR-3CDS	ENST00000418436	ENST00000431489		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5UTR-3CDS	ENST00000418436	ENST00000354487		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5UTR-3CDS	ENST00000418436	ENST00000263991		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5UTR-3CDS	ENST00000418436	ENST00000405289		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
5UTR-intron	ENST00000418436	ENST00000496857		TCGA	RV	CESC	TCGA-VS-A8EC-01A	RFC1	chr4	39343965	-	EHBP1	chr2	63169853	+
Frame-shit	ENST00000375759	ENST00000375799		TCGA	RV	CESC	TCGA-VS-A959-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16042732	+
Frame-shit	ENST00000375759	ENST00000375793		TCGA	RV	CESC	TCGA-VS-A959-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16042732	+
5CDS-intron	ENST00000375759	ENST00000477849		TCGA	RV	CESC	TCGA-VS-A959-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16042732	+
3UTR-3CDS	ENST00000471538	ENST00000375799		TCGA	RV	CESC	TCGA-VS-A959-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16042732	+
3UTR-3CDS	ENST00000471538	ENST00000375793		TCGA	RV	CESC	TCGA-VS-A959-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16042732	+
3UTR-intron	ENST00000471538	ENST00000477849		TCGA	RV	CESC	TCGA-VS-A959-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16042732	+
Frame-shit	ENST00000423759	ENST00000373829		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000423759	ENST00000538820		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
5CDS-3UTR	ENST00000423759	ENST00000465388		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000449580	ENST00000373829		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000449580	ENST00000538820		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
5CDS-3UTR	ENST00000449580	ENST00000465388		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000373790	ENST00000373829		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000373790	ENST00000538820		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
5CDS-3UTR	ENST00000373790	ENST00000465388		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000276072	ENST00000373829		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000276072	ENST00000538820		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
5CDS-3UTR	ENST00000276072	ENST00000465388		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
intron-3CDS	ENST00000461764	ENST00000373829		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
intron-3CDS	ENST00000461764	ENST00000538820		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
intron-3UTR	ENST00000461764	ENST00000465388		TCGA	RV	CESC	TCGA-EK-A2PI-01A	TAF1	chrX	70588020	+	ITGB1BP2	chrX	70523477	+
Frame-shit	ENST00000162749	ENST00000360168		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
Frame-shit	ENST00000162749	ENST00000358945		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000162749	ENST00000540037		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000162749	ENST00000228916		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000162749	ENST00000396966		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000162749	ENST00000543768		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000162749	ENST00000538979		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-3CDS	ENST00000540022	ENST00000360168		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-3CDS	ENST00000540022	ENST00000358945		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-5UTR	ENST00000540022	ENST00000540037		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-5UTR	ENST00000540022	ENST00000228916		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-5UTR	ENST00000540022	ENST00000396966		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-5UTR	ENST00000540022	ENST00000543768		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
intron-5UTR	ENST00000540022	ENST00000538979		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
Frame-shit	ENST00000366159	ENST00000360168		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
Frame-shit	ENST00000366159	ENST00000358945		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000366159	ENST00000540037		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000366159	ENST00000228916		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000366159	ENST00000396966		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000366159	ENST00000543768		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5CDS-5UTR	ENST00000366159	ENST00000538979		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-3CDS	ENST00000437813	ENST00000360168		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-3CDS	ENST00000437813	ENST00000358945		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-5UTR	ENST00000437813	ENST00000540037		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-5UTR	ENST00000437813	ENST00000228916		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-5UTR	ENST00000437813	ENST00000396966		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-5UTR	ENST00000437813	ENST00000543768		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
5UTR-5UTR	ENST00000437813	ENST00000538979		TCGA	RV	CESC	TCGA-VS-A94W-01A	TNFRSF1A	chr12	6442903	-	SCNN1A	chr12	6465046	-
Frame-shit	ENST00000367094	ENST00000310546		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	TULP4	chr6	158735300	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000367094	ENST00000507895		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	TULP4	chr6	158735300	+	SPSB4	chr3	140865984	+
Frame-shit	ENST00000367097	ENST00000310546		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	TULP4	chr6	158735300	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000367097	ENST00000507895		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	TULP4	chr6	158735300	+	SPSB4	chr3	140865984	+
5CDS-5UTR	ENST00000326685	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000326685	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000326685	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000326685	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000326685	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000356541	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000356541	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000356541	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000356541	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000356541	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000309868	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000309868	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000309868	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000309868	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000309868	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000506113	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000506113	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000506113	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000506113	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000506113	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000504238	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000504238	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000504238	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000504238	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000504238	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000508983	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-5UTR	ENST00000508983	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000508983	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000508983	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
5CDS-intron	ENST00000508983	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-5UTR	ENST00000517451	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-5UTR	ENST00000517451	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-intron	ENST00000517451	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-intron	ENST00000517451	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-intron	ENST00000517451	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-5UTR	ENST00000519549	ENST00000324695		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-5UTR	ENST00000519549	ENST00000433712		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-intron	ENST00000519549	ENST00000355722		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-intron	ENST00000519549	ENST00000409625		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
intron-intron	ENST00000519549	ENST00000466594		TCGA	RV	CESC	TCGA-HM-A3JJ-01A	ABLIM3	chr5	148521671	+	TRPM8	chr2	234835178	+
Frame-shit	ENST00000265846	ENST00000456758		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000457378		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000389574		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000452783		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000405266		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000401592		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000403868		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000425407		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000469755		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000265846	ENST00000413514		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
Frame-shit	ENST00000449296	ENST00000456758		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000457378		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000389574		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000452783		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000405266		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000401592		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000403868		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000425407		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000469755		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000449296	ENST00000413514		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
Frame-shit	ENST00000539900	ENST00000456758		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000457378		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000389574		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000452783		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000405266		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000401592		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000403868		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000425407		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000469755		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5CDS-intron	ENST00000539900	ENST00000413514		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-3CDS	ENST00000463358	ENST00000456758		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000457378		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000389574		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000452783		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000405266		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000401592		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000403868		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000425407		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000469755		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
5UTR-intron	ENST00000463358	ENST00000413514		TCGA	RV	CESC	TCGA-DS-A7WH-01A	ADAP1	chr7	959605	-	SUN1	chr7	908986	+
In-frame	ENST00000285243	ENST00000397661		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
In-frame	ENST00000285243	ENST00000592199		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
In-frame	ENST00000285243	ENST00000587760		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
In-frame	ENST00000285243	ENST00000585575		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
In-frame	ENST00000285243	ENST00000360105		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000285243	ENST00000588228		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000285243	ENST00000587260		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000285243	ENST00000358552		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
5CDS-intron	ENST00000285243	ENST00000588680		TCGA	RV	CESC	TCGA-C5-A7CM-01A	ANKRD40	chr17	48784882	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000222374	ENST00000240727		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000222374	ENST00000601144		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000222374	ENST00000421612		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000222374	ENST00000600404		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000222374	ENST00000595944		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000222374	ENST00000594567		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000593506	ENST00000240727		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000593506	ENST00000601144		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000593506	ENST00000421612		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000593506	ENST00000600404		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000593506	ENST00000595944		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000593506	ENST00000594567		TCGA	RV	CESC	TCGA-IR-A3LH-01A	CADM4	chr19	44143879	-	ZSCAN18	chr19	58601753	-
intron-3CDS	ENST00000556036	ENST00000355765		TCGA	RV	CESC	TCGA-VS-A9UO-01A	FANCM	chr14	45665750	+	PRPF39	chr14	45576654	+
Frame-shit	ENST00000267430	ENST00000355765		TCGA	RV	CESC	TCGA-VS-A9UO-01A	FANCM	chr14	45665750	+	PRPF39	chr14	45576654	+
Frame-shit	ENST00000542564	ENST00000355765		TCGA	RV	CESC	TCGA-VS-A9UO-01A	FANCM	chr14	45665750	+	PRPF39	chr14	45576654	+
intron-3CDS	ENST00000555013	ENST00000355765		TCGA	RV	CESC	TCGA-VS-A9UO-01A	FANCM	chr14	45665750	+	PRPF39	chr14	45576654	+
Frame-shit	ENST00000540746	ENST00000304613		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000540746	ENST00000368572		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000540746	ENST00000368571		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
5CDS-intron	ENST00000540746	ENST00000530127		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000544216	ENST00000304613		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000544216	ENST00000368572		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000544216	ENST00000368571		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
5CDS-intron	ENST00000544216	ENST00000530127		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000433627	ENST00000304613		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000433627	ENST00000368572		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000433627	ENST00000368571		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
5CDS-intron	ENST00000433627	ENST00000530127		TCGA	RV	CESC	TCGA-C5-A907-01A	LSM14A	chr19	34663668	+	KNDC1	chr10	134996848	+
Frame-shit	ENST00000216277	ENST00000551492		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000346562		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000341321		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000548645		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000356141		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000357798		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000547068		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000216277	ENST00000551008		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000216277	ENST00000550662		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000551492		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000346562		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000341321		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000548645		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000356141		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000357798		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000547068		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557320	ENST00000551008		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000557320	ENST00000550662		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000551492		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000346562		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000341321		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000548645		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000356141		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000357798		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000547068		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-3CDS	ENST00000554130	ENST00000551008		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
3UTR-intron	ENST00000554130	ENST00000550662		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000551492		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000346562		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000341321		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000548645		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000356141		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000357798		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000547068		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000557471	ENST00000551008		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000557471	ENST00000550662		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000551492		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000346562		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000341321		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000548645		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000356141		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000357798		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000547068		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000392990	ENST00000551008		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000392990	ENST00000550662		TCGA	RV	CESC	TCGA-EK-A2R7-01A	PAPOLA	chr14	96968937	+	NPAS3	chr14	34145417	+
5UTR-3CDS	ENST00000334186	ENST00000332955		TCGA	RV	CESC	TCGA-IR-A3LK-01A	PPFIA3	chr19	49622979	+	IZUMO1	chr19	49248545	-
intron-3CDS	ENST00000602351	ENST00000332955		TCGA	RV	CESC	TCGA-IR-A3LK-01A	PPFIA3	chr19	49622979	+	IZUMO1	chr19	49248545	-
5CDS-5UTR	ENST00000200453	ENST00000270221		TCGA	RV	CESC	TCGA-VS-A9UT-01A	PPP1R15A	chr19	49378155	+	EMP3	chr19	48830087	+
5CDS-intron	ENST00000200453	ENST00000596315		TCGA	RV	CESC	TCGA-VS-A9UT-01A	PPP1R15A	chr19	49378155	+	EMP3	chr19	48830087	+
5CDS-5UTR	ENST00000200453	ENST00000597279		TCGA	RV	CESC	TCGA-VS-A9UT-01A	PPP1R15A	chr19	49378155	+	EMP3	chr19	48830087	+
5UTR-3CDS	ENST00000375114	ENST00000328041		TCGA	RV	CESC	TCGA-UC-A7PF-01A	RALY	chr20	32581937	+	SLC24A3	chr20	19560644	+
5UTR-3CDS	ENST00000246194	ENST00000328041		TCGA	RV	CESC	TCGA-UC-A7PF-01A	RALY	chr20	32581937	+	SLC24A3	chr20	19560644	+
intron-3CDS	ENST00000493399	ENST00000328041		TCGA	RV	CESC	TCGA-UC-A7PF-01A	RALY	chr20	32581937	+	SLC24A3	chr20	19560644	+
5CDS-5UTR	ENST00000304987	ENST00000280325		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	SIK2	chr11	111491126	+	C11orf53	chr11	111152123	+
intron-5UTR	ENST00000533868	ENST00000280325		TCGA	RV	CESC	TCGA-ZJ-AAXB-01A	SIK2	chr11	111491126	+	C11orf53	chr11	111152123	+
In-frame	ENST00000542575	ENST00000343638		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000302904		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000527034		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000533177		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000436088		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000393606		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000529383		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000542575	ENST00000526094		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
5CDS-intron	ENST00000542575	ENST00000537550		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000343638		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000302904		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000527034		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000533177		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000436088		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000393606		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000529383		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000434726	ENST00000526094		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
5CDS-intron	ENST00000434726	ENST00000537550		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000343638		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000302904		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000527034		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000533177		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000436088		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000393606		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000529383		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
Frame-shit	ENST00000594991	ENST00000526094		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
5CDS-intron	ENST00000594991	ENST00000537550		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000343638		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000302904		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000527034		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000533177		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000436088		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000393606		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000529383		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-3CDS	ENST00000412532	ENST00000526094		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
intron-intron	ENST00000412532	ENST00000537550		TCGA	RV	CESC	TCGA-EA-A410-01A	SLC1A5	chr19	47278142	-	UBTF	chr17	42288699	-
In-frame	ENST00000536168	ENST00000394919		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000536168	ENST00000342444		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000536168	ENST00000317168		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000536168	ENST00000545550		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000536168	ENST00000317126		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000536168	ENST00000394915		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000536168	ENST00000492502		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
In-frame	ENST00000373109	ENST00000394919		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000373109	ENST00000342444		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000373109	ENST00000317168		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000373109	ENST00000545550		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000373109	ENST00000317126		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000373109	ENST00000394915		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000373109	ENST00000492502		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
Frame-shit	ENST00000317376	ENST00000394919		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000317376	ENST00000342444		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000317376	ENST00000317168		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000317376	ENST00000545550		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-3UTR	ENST00000317376	ENST00000317126		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000317376	ENST00000394915		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
5CDS-intron	ENST00000317376	ENST00000492502		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3CDS	ENST00000460053	ENST00000394919		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000460053	ENST00000342444		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000460053	ENST00000317168		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000460053	ENST00000545550		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000460053	ENST00000317126		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-intron	ENST00000460053	ENST00000394915		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-intron	ENST00000460053	ENST00000492502		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3CDS	ENST00000412663	ENST00000394919		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000412663	ENST00000342444		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000412663	ENST00000317168		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000412663	ENST00000545550		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-3UTR	ENST00000412663	ENST00000317126		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-intron	ENST00000412663	ENST00000394915		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
intron-intron	ENST00000412663	ENST00000492502		TCGA	RV	CESC	TCGA-EX-A8YF-01A	SPOCK2	chr10	73831902	-	ASCC1	chr10	73857208	-
In-frame	ENST00000383836	ENST00000302640		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000383836	ENST00000354582		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000383836	ENST00000423119		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000383836	ENST00000456211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000383836	ENST00000357086		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000383836	ENST00000544951		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000383836	ENST00000443694		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000383836	ENST00000463980		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000360413	ENST00000302640		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000360413	ENST00000354582		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000360413	ENST00000423119		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000360413	ENST00000456211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
In-frame	ENST00000360413	ENST00000357086		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000360413	ENST00000544951		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000360413	ENST00000443694		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
5CDS-intron	ENST00000360413	ENST00000463980		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000433332	ENST00000302640		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000433332	ENST00000354582		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000433332	ENST00000423119		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000433332	ENST00000456211		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-3CDS	ENST00000433332	ENST00000357086		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-intron	ENST00000433332	ENST00000544951		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-intron	ENST00000433332	ENST00000443694		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
intron-intron	ENST00000433332	ENST00000463980		TCGA	RV	CESC	TCGA-VS-A9UO-01A	SRGAP3	chr3	9032196	-	ITPR1	chr3	4808214	+
Frame-shit	ENST00000319006	ENST00000318562		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000319006	ENST00000533256		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000319006	ENST00000530636		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000319006	ENST00000526198		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000319006	ENST00000534449		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000318562		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000533256		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000530636		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000526198		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000528097	ENST00000534449		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000318562		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000533256		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000530636		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000526198		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000532202	ENST00000534449		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	TALDO1	chr11	747578	+	EPS8L2	chr11	720062	+
intron-5UTR	ENST00000560371	ENST00000321442		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
intron-intron	ENST00000560371	ENST00000515791		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
intron-5UTR	ENST00000560371	ENST00000502393		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-5UTR	ENST00000347662	ENST00000321442		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-intron	ENST00000347662	ENST00000515791		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-5UTR	ENST00000347662	ENST00000502393		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-5UTR	ENST00000392745	ENST00000321442		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-intron	ENST00000392745	ENST00000515791		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-5UTR	ENST00000392745	ENST00000502393		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
intron-5UTR	ENST00000539721	ENST00000321442		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
intron-intron	ENST00000539721	ENST00000515791		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
intron-5UTR	ENST00000539721	ENST00000502393		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-5UTR	ENST00000351691	ENST00000321442		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-intron	ENST00000351691	ENST00000515791		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
5UTR-5UTR	ENST00000351691	ENST00000502393		TCGA	RV	CESC	TCGA-C5-A8XH-01A	TRAF3	chr14	103296809	+	SFXN1	chr5	174919098	+
3UTR-3CDS	ENST00000494757	ENST00000393547		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
3UTR-3CDS	ENST00000494757	ENST00000398338		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
3UTR-3CDS	ENST00000494757	ENST00000315005		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
3UTR-3UTR	ENST00000494757	ENST00000526915		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000323571	ENST00000393547		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000323571	ENST00000398338		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000323571	ENST00000315005		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3UTR	ENST00000323571	ENST00000526915		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000585043	ENST00000393547		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000585043	ENST00000398338		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000585043	ENST00000315005		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3UTR	ENST00000585043	ENST00000526915		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000394103	ENST00000393547		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000394103	ENST00000398338		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000394103	ENST00000315005		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3UTR	ENST00000394103	ENST00000526915		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000536600	ENST00000393547		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000536600	ENST00000398338		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3CDS	ENST00000536600	ENST00000315005		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5UTR-3UTR	ENST00000536600	ENST00000526915		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000583130	ENST00000393547		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000583130	ENST00000398338		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000583130	ENST00000315005		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
intron-3UTR	ENST00000583130	ENST00000526915		TCGA	RV	CESC	TCGA-VS-A9UP-01A	WIPF2	chr17	38375744	+	DBF4B	chr17	42800248	+
5CDS-5UTR	ENST00000209875	ENST00000312156		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000209875	ENST00000435572		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000209875	ENST00000540264		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000209875	ENST00000553070		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000312156		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000435572		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000540264		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000553070		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000312156		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000435572		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000540264		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000553070		TCGA	RV	CESC	TCGA-DS-A5RQ-01A	CBX5	chr12	54645825	-	NFE2	chr12	54689088	-
Frame-shit	ENST00000437809	ENST00000368315		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000437809	ENST00000313695		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000437809	ENST00000361247		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000437809	ENST00000368316		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000437809	ENST00000462460		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000437809	ENST00000477754		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000437809	ENST00000313667		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000368331	ENST00000368315		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368331	ENST00000313695		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368331	ENST00000361247		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368331	ENST00000368316		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368331	ENST00000462460		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368331	ENST00000477754		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368331	ENST00000313667		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000271883	ENST00000368315		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000271883	ENST00000313695		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000271883	ENST00000361247		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000271883	ENST00000368316		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000271883	ENST00000462460		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000271883	ENST00000477754		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000271883	ENST00000313667		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000361040	ENST00000368315		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361040	ENST00000313695		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361040	ENST00000361247		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361040	ENST00000368316		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361040	ENST00000462460		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000361040	ENST00000477754		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000361040	ENST00000313667		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-3CDS	ENST00000471341	ENST00000368315		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-5UTR	ENST00000471341	ENST00000313695		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-5UTR	ENST00000471341	ENST00000361247		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-5UTR	ENST00000471341	ENST00000368316		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-5UTR	ENST00000471341	ENST00000462460		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-intron	ENST00000471341	ENST00000477754		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-intron	ENST00000471341	ENST00000313667		TCGA	RV	CESC	TCGA-HM-A6W2-01A	GON4L	chr1	155746186	-	ARHGEF2	chr1	155939091	-
5UTR-5UTR	ENST00000355630	ENST00000491545		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000435456		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000402844		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000544408		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000542412		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000491545		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000435456		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000402844		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000544408		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000542412		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000491545		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000435456		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000402844		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000544408		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000542412		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000491545		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000435456		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000402844		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000544408		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000542412		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000491545		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000435456		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000402844		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000544408		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000542412		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000491545		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000435456		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000402844		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000544408		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000542412		TCGA	RV	CESC	TCGA-UC-A7PF-01A	MKL1	chr22	41032482	-	SLC25A17	chr22	41175129	-
Frame-shit	ENST00000262065	ENST00000083182		TCGA	RV	CESC	TCGA-VS-A9UP-01A	MMD	chr17	53499031	-	APPBP2	chr17	58543820	-
5CDS-intron	ENST00000262065	ENST00000592995		TCGA	RV	CESC	TCGA-VS-A9UP-01A	MMD	chr17	53499031	-	APPBP2	chr17	58543820	-
5UTR-3CDS	ENST00000577038	ENST00000083182		TCGA	RV	CESC	TCGA-VS-A9UP-01A	MMD	chr17	53499031	-	APPBP2	chr17	58543820	-
5UTR-intron	ENST00000577038	ENST00000592995		TCGA	RV	CESC	TCGA-VS-A9UP-01A	MMD	chr17	53499031	-	APPBP2	chr17	58543820	-
In-frame	ENST00000296684	ENST00000274306		TCGA	RV	CESC	TCGA-VS-A8EI-01A	NDUFS4	chr5	52954454	+	GZMA	chr5	54401302	+
Frame-shit	ENST00000589123	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000589123	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000589123	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000589123	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000346156	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000346156	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000346156	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000346156	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000395111	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000395111	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000395111	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000395111	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000586919	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000586919	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000586919	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000586919	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000341919	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000341919	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000341919	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000341919	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000590282	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000590282	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000590282	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000590282	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000443272	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000443272	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000443272	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000443272	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
intron-3CDS	ENST00000588839	ENST00000246112		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
intron-3CDS	ENST00000588839	ENST00000482627		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
intron-5UTR	ENST00000588839	ENST00000452088		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
intron-intron	ENST00000588839	ENST00000478073		TCGA	RV	CESC	TCGA-VS-A9V0-01A	NFIC	chr19	3382241	+	TLE6	chr19	2980098	+
In-frame	ENST00000336868	ENST00000302538		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000544583		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000572441		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000574437		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000291107		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000543210		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000536794		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
5CDS-intron	ENST00000336868	ENST00000573895		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000302538		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000544583		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000572441		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000574437		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000291107		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000543210		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000536794		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000577098	ENST00000573895		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000302538		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000544583		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000572441		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000574437		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000291107		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000543210		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000536794		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000575801	ENST00000573895		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000302538		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000544583		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000572441		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000574437		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000291107		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000543210		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000536794		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000538650	ENST00000573895		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000302538		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000544583		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000572441		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000574437		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000291107		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000543210		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000536794		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000537628	ENST00000573895		TCGA	RV	CESC	TCGA-EK-A2RO-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
5CDS-5UTR	ENST00000579146	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000579146	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000579146	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000579146	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000300658	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000300658	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000300658	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000300658	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000378011	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000378011	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000378011	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000378011	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000429199	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000429199	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000429199	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000429199	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9U5-01A	PGAP3	chr17	37842175	-	ERBB2	chr17	37844949	+
Frame-shit	ENST00000481739	ENST00000589222		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000481739	ENST00000407086		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000481739	ENST00000390652		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000481739	ENST00000408905		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000481739	ENST00000588462		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000481739	ENST00000585744		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000481739	ENST00000588874		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000481739	ENST00000585812		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000356384	ENST00000589222		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000356384	ENST00000407086		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000356384	ENST00000390652		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000356384	ENST00000408905		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000356384	ENST00000588462		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-intron	ENST00000356384	ENST00000585744		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-intron	ENST00000356384	ENST00000588874		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-intron	ENST00000356384	ENST00000585812		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000540193	ENST00000589222		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000540193	ENST00000407086		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000540193	ENST00000390652		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000540193	ENST00000408905		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-3CDS	ENST00000540193	ENST00000588462		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-intron	ENST00000540193	ENST00000585744		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-intron	ENST00000540193	ENST00000588874		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
intron-intron	ENST00000540193	ENST00000585812		TCGA	RV	CESC	TCGA-C5-A8XH-01A	RXRA	chr9	137218505	+	BCAS3	chr17	58945937	+
5CDS-3UTR	ENST00000368738	ENST00000318789		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368738	ENST00000475937		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000493089		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000484350		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000318779		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000491238		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000498215		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000468577		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368738	ENST00000472382		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	S100A9	chr1	153333503	+	FOXP1	chr3	71007472	-
5CDS-5UTR	ENST00000313050	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000313050	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000313050	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000313050	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000313050	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000467838	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000467838	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000467838	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000467838	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000371706	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000371706	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000371706	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000371706	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000313084	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000313084	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000313084	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000313084	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000290037	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000290037	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000290037	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000290037	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000431893	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000431893	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-intron	ENST00000431893	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
5CDS-5UTR	ENST00000431893	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000455127		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000576730		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000572645		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000538396		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000573478		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000574190		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000398335	ENST00000570507		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000398335	ENST00000575090		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-intron	ENST00000398335	ENST00000576679		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000576431		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
intron-5UTR	ENST00000398335	ENST00000575061		TCGA	RV	CESC	TCGA-VS-A9UT-01A	SEC16A	chr9	139366427	-	FAM195B	chr17	79782430	-
Frame-shit	ENST00000534313	ENST00000308831		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000534313	ENST00000533360		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000534313	ENST00000532559		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000527525	ENST00000308831		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000527525	ENST00000533360		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000527525	ENST00000532559		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000394224	ENST00000308831		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000394224	ENST00000533360		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000394224	ENST00000532559		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000394227	ENST00000308831		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000394227	ENST00000533360		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000394227	ENST00000532559		TCGA	RV	CESC	TCGA-C5-A1M8-01A	SIPA1	chr11	65415129	+	RHOD	chr11	66833367	+
In-frame	ENST00000566228	ENST00000324288		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
In-frame	ENST00000566228	ENST00000381835		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
5CDS-3UTR	ENST00000566228	ENST00000537380		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
In-frame	ENST00000323433	ENST00000324288		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
In-frame	ENST00000323433	ENST00000381835		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
5CDS-3UTR	ENST00000323433	ENST00000537380		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
In-frame	ENST00000306030	ENST00000324288		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
In-frame	ENST00000306030	ENST00000381835		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
5CDS-3UTR	ENST00000306030	ENST00000537380		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
intron-3CDS	ENST00000568359	ENST00000324288		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
intron-3CDS	ENST00000568359	ENST00000381835		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
intron-3UTR	ENST00000568359	ENST00000537380		TCGA	RV	CESC	TCGA-C5-A1MJ-01A	SNX29	chr16	12172772	+	CIITA	chr16	10989139	+
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	CESC	TCGA-C5-A8XK-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000462705	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000462705	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000462705	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3UTR	ENST00000462705	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000393785	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000393785	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000393785	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3UTR	ENST00000393785	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000481632	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000481632	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000481632	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3UTR	ENST00000481632	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000471418	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000471418	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000471418	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3UTR	ENST00000471418	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3CDS	ENST00000357258	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3CDS	ENST00000357258	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3CDS	ENST00000357258	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3UTR	ENST00000357258	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000464560	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000464560	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000464560	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3UTR	ENST00000464560	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3CDS	ENST00000488663	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3CDS	ENST00000488663	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3CDS	ENST00000488663	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
5UTR-3UTR	ENST00000488663	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000474710	ENST00000541529		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000474710	ENST00000270776		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3CDS	ENST00000474710	ENST00000538557		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
intron-3UTR	ENST00000474710	ENST00000498356		TCGA	RV	CESC	TCGA-EA-A1QS-01A	ZBTB20	chr3	114519948	-	PGD	chr1	10479474	+
Frame-shit	ENST00000392676	ENST00000586178		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000392676	ENST00000415868		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000392676	ENST00000376381		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000392676	ENST00000593259		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000392677	ENST00000586178		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000392677	ENST00000415868		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000392677	ENST00000376381		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000392677	ENST00000593259		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000588877	ENST00000586178		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000588877	ENST00000415868		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000588877	ENST00000376381		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000588877	ENST00000593259		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000589609	ENST00000586178		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000589609	ENST00000415868		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000589609	ENST00000376381		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000589609	ENST00000593259		TCGA	RV	CESC	TCGA-VS-A8QC-01A	ABCA5	chr17	67290796	-	MBTD1	chr17	49258055	-
In-frame	ENST00000219299	ENST00000290776		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000219299	ENST00000537605		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000219299	ENST00000535318		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000219299	ENST00000565874		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
5CDS-3UTR	ENST00000219299	ENST00000565951		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000443128	ENST00000290776		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000443128	ENST00000537605		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000443128	ENST00000535318		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
In-frame	ENST00000443128	ENST00000565874		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
5CDS-3UTR	ENST00000443128	ENST00000565951		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
intron-3CDS	ENST00000566498	ENST00000290776		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
intron-3CDS	ENST00000566498	ENST00000537605		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
intron-3CDS	ENST00000566498	ENST00000535318		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
intron-3CDS	ENST00000566498	ENST00000565874		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
intron-3UTR	ENST00000566498	ENST00000565951		TCGA	RV	CESC	TCGA-EK-A2PM-01A	CCDC113	chr16	58301490	+	CPNE2	chr16	57179997	+
5CDS-5UTR	ENST00000409790	ENST00000571688		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000413364		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000339430		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000381810		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000570904		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000571459		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000409790	ENST00000572255		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000576036		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000574763		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000571976		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409790	ENST00000574703		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571688		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000413364		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000339430		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000381810		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000570904		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571459		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000409552	ENST00000572255		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000576036		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000574763		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000571976		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000409552	ENST00000574703		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000571688		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000413364		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000339430		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000381810		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000570904		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000571459		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-intron	ENST00000465491	ENST00000572255		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000576036		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000574763		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000571976		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000465491	ENST00000574703		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000571688		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000413364		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000339430		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000381810		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000570904		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000571459		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-intron	ENST00000381822	ENST00000572255		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000576036		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000574763		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000571976		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000381822	ENST00000574703		TCGA	RV	CESC	TCGA-MA-AA3Z-01A	CLEC16A	chr16	11154879	+	LITAF	chr16	11650591	-
Frame-shit	ENST00000330687	ENST00000258198		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000330687	ENST00000379482		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000330687	ENST00000443351		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
5CDS-intron	ENST00000330687	ENST00000570201		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
5CDS-intron	ENST00000330687	ENST00000440564		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000394106	ENST00000258198		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000394106	ENST00000379482		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000394106	ENST00000443351		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
5CDS-intron	ENST00000394106	ENST00000570201		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
5CDS-intron	ENST00000394106	ENST00000440564		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000563952	ENST00000258198		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000563952	ENST00000379482		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
Frame-shit	ENST00000563952	ENST00000443351		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
5CDS-intron	ENST00000563952	ENST00000570201		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
5CDS-intron	ENST00000563952	ENST00000440564		TCGA	RV	CESC	TCGA-C5-A3HF-01A	CMTM4	chr16	66657307	-	DYNC1LI2	chr16	66770147	-
intron-3UTR	ENST00000524630	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-5UTR	ENST00000524630	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000524630	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000524630	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000524630	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-3UTR	ENST00000529919	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-5UTR	ENST00000529919	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000529919	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000529919	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000529919	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-3UTR	ENST00000399039	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-5UTR	ENST00000399039	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000399039	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000399039	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
intron-intron	ENST00000399039	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000360682	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000360682	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000360682	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000360682	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000360682	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000361796	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000361796	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361796	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361796	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361796	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000361391	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000361391	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361391	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361391	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361391	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000530094	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000530094	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000530094	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000530094	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000530094	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000428599	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000428599	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000428599	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000428599	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000428599	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000361332	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000361332	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361332	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361332	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000361332	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000527467	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000527467	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000527467	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000527467	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000527467	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000415361	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000415361	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000415361	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000415361	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000415361	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000532245	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000532245	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532245	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532245	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532245	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000532463	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000532463	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532463	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532463	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532463	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000528232	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000528232	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000528232	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000528232	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000528232	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000529986	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000529986	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529986	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529986	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529986	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000531014	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000531014	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000531014	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000531014	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000531014	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000358694	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000358694	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000358694	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000358694	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000358694	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000526772	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000526772	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526772	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526772	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526772	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000532787	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000532787	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532787	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532787	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532787	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000533667	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000533667	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000533667	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000533667	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000533667	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000529873	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000529873	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529873	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529873	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529873	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000525902	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000525902	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000525902	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000525902	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000525902	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000529526	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000529526	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529526	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529526	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000529526	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000532649	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000532649	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532649	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532649	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532649	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000426142	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000426142	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000426142	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000426142	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000426142	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000532844	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000532844	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532844	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532844	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000532844	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000528621	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000528621	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000528621	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000528621	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000528621	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000399050	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000399050	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000399050	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000399050	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000399050	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000526357	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000526357	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526357	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526357	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526357	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000530748	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000530748	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000530748	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000530748	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000530748	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000534579	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000534579	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000534579	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000534579	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000534579	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-3UTR	ENST00000526938	ENST00000525620		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-5UTR	ENST00000526938	ENST00000535888		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526938	ENST00000544661		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526938	ENST00000332793		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5UTR-intron	ENST00000526938	ENST00000526800		TCGA	RV	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934337	+
5CDS-5UTR	ENST00000289371	ENST00000308528		TCGA	RV	CESC	TCGA-EA-A1QS-01A	EIF5B	chr2	99954052	+	LYG1	chr2	99912165	-
5CDS-5UTR	ENST00000289371	ENST00000409448		TCGA	RV	CESC	TCGA-EA-A1QS-01A	EIF5B	chr2	99954052	+	LYG1	chr2	99912165	-
Frame-shit	ENST00000441802	ENST00000394480		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000557856		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000357724		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000355254		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000360948		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000542733		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000558676		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000441802	ENST00000317501		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
5CDS-intron	ENST00000441802	ENST00000558306		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
5CDS-intron	ENST00000441802	ENST00000540489		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000394480		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000557856		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000357724		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000355254		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000360948		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000542733		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000558676		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-3CDS	ENST00000512347	ENST00000317501		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-intron	ENST00000512347	ENST00000558306		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
intron-intron	ENST00000512347	ENST00000540489		TCGA	RV	CESC	TCGA-HM-A3JK-01A	FAT1	chr4	187627717	-	NTRK3	chr15	88680792	-
Frame-shit	ENST00000540235	ENST00000280326		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000540235	ENST00000503026		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000540235	ENST00000515390		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000540235	ENST00000515676		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000540235	ENST00000506600		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000393930	ENST00000280326		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393930	ENST00000503026		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393930	ENST00000515390		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393930	ENST00000515676		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393930	ENST00000506600		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000393931	ENST00000280326		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393931	ENST00000503026		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393931	ENST00000515390		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393931	ENST00000515676		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393931	ENST00000506600		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000310706	ENST00000280326		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000310706	ENST00000503026		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000310706	ENST00000515390		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000310706	ENST00000515676		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
intron-intron	ENST00000310706	ENST00000506600		TCGA	RV	CESC	TCGA-EK-A2RE-01A	JUP	chr17	39775692	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000368321	ENST00000318443		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368321	ENST00000537340		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368321	ENST00000318424		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368321	ENST00000561213		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368321	ENST00000564751		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368320	ENST00000318443		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368320	ENST00000537340		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368320	ENST00000318424		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368320	ENST00000561213		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
Frame-shit	ENST00000368320	ENST00000564751		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000368319	ENST00000318443		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000368319	ENST00000537340		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000368319	ENST00000318424		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000368319	ENST00000561213		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000368319	ENST00000564751		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000482337	ENST00000318443		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000482337	ENST00000537340		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000482337	ENST00000318424		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000482337	ENST00000561213		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
intron-3CDS	ENST00000482337	ENST00000564751		TCGA	RV	CESC	TCGA-MA-AA41-01A	KIAA0907	chr1	155887290	-	CD276	chr15	74001989	+
In-frame	ENST00000264963	ENST00000327896		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000264963	ENST00000417561		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000264963	ENST00000490605		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000264963	ENST00000393526		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
5CDS-5UTR	ENST00000264963	ENST00000470789		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000377079	ENST00000327896		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000377079	ENST00000417561		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000377079	ENST00000490605		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
In-frame	ENST00000377079	ENST00000393526		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
5CDS-5UTR	ENST00000377079	ENST00000470789		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000426463	ENST00000327896		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000426463	ENST00000417561		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000426463	ENST00000490605		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000426463	ENST00000393526		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-5UTR	ENST00000426463	ENST00000470789		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000537039	ENST00000327896		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000537039	ENST00000417561		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000537039	ENST00000490605		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
Frame-shit	ENST00000537039	ENST00000393526		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
5CDS-5UTR	ENST00000537039	ENST00000470789		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000534882	ENST00000327896		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000534882	ENST00000417561		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000534882	ENST00000490605		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-3CDS	ENST00000534882	ENST00000393526		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
intron-5UTR	ENST00000534882	ENST00000470789		TCGA	RV	CESC	TCGA-EA-A439-01A	LMAN2L	chr2	97399256	-	FAM178B	chr2	97544230	-
5UTR-3CDS	ENST00000319481	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-3CDS	ENST00000319481	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-3CDS	ENST00000319481	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000319481	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000319481	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000319481	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000319481	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000399443	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000399443	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000399443	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399443	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399443	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399443	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399443	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000357041	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000357041	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000357041	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000357041	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000357041	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000357041	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000357041	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000399441	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000399441	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-3CDS	ENST00000399441	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399441	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399441	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399441	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
intron-5UTR	ENST00000399441	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-3CDS	ENST00000582618	ENST00000415083		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-3CDS	ENST00000582618	ENST00000542420		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-3CDS	ENST00000582618	ENST00000542743		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000582618	ENST00000539849		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000582618	ENST00000269137		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000582618	ENST00000545952		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
5UTR-5UTR	ENST00000582618	ENST00000585241		TCGA	RV	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21977619	-	SS18	chr18	23637706	-
Frame-shit	ENST00000542575	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000542575	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000542575	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000434726	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000434726	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000434726	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000594991	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000594991	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000594991	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000412532	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000412532	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000412532	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-01A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
In-frame	ENST00000372084	ENST00000275364		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
In-frame	ENST00000372084	ENST00000544127		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372084	ENST00000491117		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372084	ENST00000407904		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372084	ENST00000407653		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372084	ENST00000396960		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
Frame-shit	ENST00000372086	ENST00000275364		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
Frame-shit	ENST00000372086	ENST00000544127		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372086	ENST00000491117		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372086	ENST00000407904		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372086	ENST00000407653		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000372086	ENST00000396960		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
Frame-shit	ENST00000341771	ENST00000275364		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
Frame-shit	ENST00000341771	ENST00000544127		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000341771	ENST00000491117		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000341771	ENST00000407904		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000341771	ENST00000407653		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000341771	ENST00000396960		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-3CDS	ENST00000486676	ENST00000275364		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-3CDS	ENST00000486676	ENST00000544127		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000486676	ENST00000491117		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000486676	ENST00000407904		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000486676	ENST00000407653		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000486676	ENST00000396960		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
Frame-shit	ENST00000538496	ENST00000275364		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
Frame-shit	ENST00000538496	ENST00000544127		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000538496	ENST00000491117		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000538496	ENST00000407904		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000538496	ENST00000407653		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000538496	ENST00000396960		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-3CDS	ENST00000451835	ENST00000275364		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-3CDS	ENST00000451835	ENST00000544127		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000451835	ENST00000491117		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000451835	ENST00000407904		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000451835	ENST00000407653		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-intron	ENST00000451835	ENST00000396960		TCGA	RV	CESC	TCGA-EK-A2IR-01A	TESK2	chr1	45851584	-	GNA12	chr7	2834777	-
intron-3CDS	ENST00000351097	ENST00000299340		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
intron-3UTR	ENST00000351097	ENST00000435845		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
intron-intron	ENST00000351097	ENST00000400043		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
In-frame	ENST00000285679	ENST00000299340		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
5CDS-3UTR	ENST00000285679	ENST00000435845		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
5CDS-intron	ENST00000285679	ENST00000400043		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
In-frame	ENST00000285681	ENST00000299340		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
5CDS-3UTR	ENST00000285681	ENST00000435845		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
5CDS-intron	ENST00000285681	ENST00000400043		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
In-frame	ENST00000400183	ENST00000299340		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
5CDS-3UTR	ENST00000400183	ENST00000435845		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
5CDS-intron	ENST00000400183	ENST00000400043		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
intron-3CDS	ENST00000547201	ENST00000299340		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
intron-3UTR	ENST00000547201	ENST00000435845		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
intron-intron	ENST00000547201	ENST00000400043		TCGA	RV	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840953	-
intron-intron	ENST00000477333	ENST00000326291		TCGA	RV	CESC	TCGA-EK-A3GN-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000477333	ENST00000489922		TCGA	RV	CESC	TCGA-EK-A3GN-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000539231	ENST00000326291		TCGA	RV	CESC	TCGA-EK-A3GN-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000539231	ENST00000489922		TCGA	RV	CESC	TCGA-EK-A3GN-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000377687	ENST00000326291		TCGA	RV	CESC	TCGA-EK-A3GN-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000377687	ENST00000489922		TCGA	RV	CESC	TCGA-EK-A3GN-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
5CDS-5UTR	ENST00000278823	ENST00000294119		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000278823	ENST00000301935		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-intron	ENST00000278823	ENST00000533000		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000278823	ENST00000529640		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000278823	ENST00000524762		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000524902	ENST00000294119		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000524902	ENST00000301935		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-intron	ENST00000524902	ENST00000533000		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000524902	ENST00000529640		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000524902	ENST00000524762		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000527204	ENST00000294119		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000527204	ENST00000301935		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-intron	ENST00000527204	ENST00000533000		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000527204	ENST00000529640		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000527204	ENST00000524762		TCGA	RV	CESC	TCGA-VS-A952-01A	MTA2	chr11	62364788	-	UBXN1	chr11	62446424	-
5CDS-5UTR	ENST00000324932	ENST00000351018		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000324932	ENST00000396979		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000324932	ENST00000396978		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000324932	ENST00000533217		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000359171	ENST00000351018		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000359171	ENST00000396979		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000359171	ENST00000396978		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000359171	ENST00000533217		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000355260	ENST00000351018		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000355260	ENST00000396979		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000355260	ENST00000396978		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000355260	ENST00000533217		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397004	ENST00000351018		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397004	ENST00000396979		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397004	ENST00000396978		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397004	ENST00000533217		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397007	ENST00000351018		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397007	ENST00000396979		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397007	ENST00000396978		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
5CDS-5UTR	ENST00000397007	ENST00000533217		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000488828	ENST00000351018		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000488828	ENST00000396979		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000488828	ENST00000396978		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
intron-5UTR	ENST00000488828	ENST00000533217		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NUP98	chr11	3797112	-	RHOG	chr11	3849436	-
Frame-shit	ENST00000542575	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000542575	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000542575	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000434726	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000434726	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000434726	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000594991	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000594991	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000594991	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000412532	ENST00000354293		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000412532	ENST00000600199		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000412532	ENST00000359032		TCGA	RV	CESC	TCGA-UC-A7PG-06A	SLC1A5	chr19	47285640	-	AP2A1	chr19	50285014	+
Frame-shit	ENST00000258991	ENST00000589651		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
Frame-shit	ENST00000258991	ENST00000270233		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
Frame-shit	ENST00000583097	ENST00000589651		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
Frame-shit	ENST00000583097	ENST00000270233		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
Frame-shit	ENST00000584379	ENST00000589651		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
Frame-shit	ENST00000584379	ENST00000270233		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
intron-3CDS	ENST00000581812	ENST00000589651		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
intron-3CDS	ENST00000581812	ENST00000270233		TCGA	RV	CESC	TCGA-EA-A556-01A	TEX2	chr17	62248460	-	BCAM	chr19	45314482	+
In-frame	ENST00000450114	ENST00000348639		TCGA	RV	CESC	TCGA-C5-A7X3-01A	WEE1	chr11	9608403	+	CHRNA3	chr15	78894606	-
In-frame	ENST00000450114	ENST00000326828		TCGA	RV	CESC	TCGA-C5-A7X3-01A	WEE1	chr11	9608403	+	CHRNA3	chr15	78894606	-
5CDS-intron	ENST00000450114	ENST00000559941		TCGA	RV	CESC	TCGA-C5-A7X3-01A	WEE1	chr11	9608403	+	CHRNA3	chr15	78894606	-
In-frame	ENST00000299613	ENST00000348639		TCGA	RV	CESC	TCGA-C5-A7X3-01A	WEE1	chr11	9608403	+	CHRNA3	chr15	78894606	-
In-frame	ENST00000299613	ENST00000326828		TCGA	RV	CESC	TCGA-C5-A7X3-01A	WEE1	chr11	9608403	+	CHRNA3	chr15	78894606	-
5CDS-intron	ENST00000299613	ENST00000559941		TCGA	RV	CESC	TCGA-C5-A7X3-01A	WEE1	chr11	9608403	+	CHRNA3	chr15	78894606	-
Frame-shit	ENST00000373233	ENST00000361383		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000373233	ENST00000405275		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000373233	ENST00000373473		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000373233	ENST00000473857		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000373233	ENST00000373469		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000309279	ENST00000361383		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000309279	ENST00000405275		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000309279	ENST00000373473		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000309279	ENST00000473857		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000309279	ENST00000373469		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000373222	ENST00000361383		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000373222	ENST00000405275		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000373222	ENST00000373473		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000373222	ENST00000473857		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000373222	ENST00000373469		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000480022	ENST00000361383		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000480022	ENST00000405275		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000480022	ENST00000373473		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
intron-3UTR	ENST00000480022	ENST00000473857		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
intron-3UTR	ENST00000480022	ENST00000373469		TCGA	RV	CESC	TCGA-C5-A7CO-01A	CHD6	chr20	40141485	-	CTNNBL1	chr20	36488301	+
5CDS-intron	ENST00000248553	ENST00000300134		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000248553	ENST00000538913		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000248553	ENST00000543873		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000248553	ENST00000556155		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000248553	ENST00000537215		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000248553	ENST00000454075		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000429938	ENST00000300134		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000429938	ENST00000538913		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000429938	ENST00000543873		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000429938	ENST00000556155		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000429938	ENST00000537215		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000429938	ENST00000454075		TCGA	RV	CESC	TCGA-VS-A958-01A	HSPB1	chr7	75933612	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000540235	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000540235	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000540235	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000540235	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000540235	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393930	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393930	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393930	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393930	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393930	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393931	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393931	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393931	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393931	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393931	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000310706	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000310706	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000310706	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000310706	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000310706	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	JUP	chr17	39775692	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000252242	ENST00000270189		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000252242	ENST00000429089		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000252242	ENST00000220809		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000252242	ENST00000352041		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000252242	ENST00000519510		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000252242	ENST00000429710		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000252242	ENST00000524009		TCGA	RV	CESC	TCGA-EA-A5FO-01A	KRT5	chr12	52908359	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000178640	ENST00000358767		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000178640	ENST00000546225		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000178640	ENST00000335894		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000178640	ENST00000360277		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000178640	ENST00000512104		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000178640	ENST00000560790		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
3UTR-intron	ENST00000560591	ENST00000358767		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
3UTR-intron	ENST00000560591	ENST00000546225		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
3UTR-intron	ENST00000560591	ENST00000335894		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
3UTR-intron	ENST00000560591	ENST00000360277		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
3UTR-intron	ENST00000560591	ENST00000512104		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
3UTR-intron	ENST00000560591	ENST00000560790		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000395476	ENST00000358767		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000395476	ENST00000546225		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000395476	ENST00000335894		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000395476	ENST00000360277		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000395476	ENST00000512104		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000395476	ENST00000560790		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000354498	ENST00000358767		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000354498	ENST00000546225		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000354498	ENST00000335894		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000354498	ENST00000360277		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000354498	ENST00000512104		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000354498	ENST00000560790		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
intron-intron	ENST00000340972	ENST00000358767		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
intron-intron	ENST00000340972	ENST00000546225		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
intron-intron	ENST00000340972	ENST00000335894		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
intron-intron	ENST00000340972	ENST00000360277		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
intron-intron	ENST00000340972	ENST00000512104		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
intron-intron	ENST00000340972	ENST00000560790		TCGA	RV	CESC	TCGA-C5-A7X3-01A	MAP2K5	chr15	67885312	+	IQCH	chr15	67782341	+
5CDS-intron	ENST00000281928	ENST00000299732		TCGA	RV	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000281928	ENST00000416617		TCGA	RV	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000281928	ENST00000546692		TCGA	RV	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113638618	-
5UTR-intron	ENST00000551197	ENST00000299732		TCGA	RV	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113638618	-
5UTR-intron	ENST00000551197	ENST00000416617		TCGA	RV	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113638618	-
5UTR-intron	ENST00000551197	ENST00000546692		TCGA	RV	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113638618	-
Frame-shit	ENST00000233146	ENST00000392347		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
Frame-shit	ENST00000233146	ENST00000389641		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-intron	ENST00000233146	ENST00000392346		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-5UTR	ENST00000233146	ENST00000327026		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-5UTR	ENST00000233146	ENST00000392343		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
Frame-shit	ENST00000543555	ENST00000392347		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
Frame-shit	ENST00000543555	ENST00000389641		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-intron	ENST00000543555	ENST00000392346		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-5UTR	ENST00000543555	ENST00000327026		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-5UTR	ENST00000543555	ENST00000392343		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
Frame-shit	ENST00000406134	ENST00000392347		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
Frame-shit	ENST00000406134	ENST00000389641		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-intron	ENST00000406134	ENST00000392346		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-5UTR	ENST00000406134	ENST00000327026		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
5CDS-5UTR	ENST00000406134	ENST00000392343		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
intron-3CDS	ENST00000461394	ENST00000392347		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
intron-3CDS	ENST00000461394	ENST00000389641		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
intron-intron	ENST00000461394	ENST00000392346		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
intron-5UTR	ENST00000461394	ENST00000327026		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
intron-5UTR	ENST00000461394	ENST00000392343		TCGA	RV	CESC	TCGA-ZJ-AB0I-01A	MSH2	chr2	47637511	+	CCDC57	chr17	80121233	-
Frame-shit	ENST00000374399	ENST00000361548		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000374399	ENST00000342072		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000374399	ENST00000350501		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000374399	ENST00000530984		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000374399	ENST00000356046		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000374399	ENST00000236255		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
Frame-shit	ENST00000003912	ENST00000361548		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000003912	ENST00000342072		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000003912	ENST00000350501		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000003912	ENST00000530984		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000003912	ENST00000356046		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000003912	ENST00000236255		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
Frame-shit	ENST00000358028	ENST00000361548		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000358028	ENST00000342072		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000358028	ENST00000350501		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000358028	ENST00000530984		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000358028	ENST00000356046		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000358028	ENST00000236255		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
Frame-shit	ENST00000339255	ENST00000361548		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000339255	ENST00000342072		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000339255	ENST00000350501		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000339255	ENST00000530984		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000339255	ENST00000356046		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000339255	ENST00000236255		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
Frame-shit	ENST00000428131	ENST00000361548		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000428131	ENST00000342072		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000428131	ENST00000350501		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-3UTR	ENST00000428131	ENST00000530984		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000428131	ENST00000356046		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-5UTR	ENST00000428131	ENST00000236255		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
intron-3CDS	ENST00000488155	ENST00000361548		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000488155	ENST00000342072		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000488155	ENST00000350501		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
intron-3UTR	ENST00000488155	ENST00000530984		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000488155	ENST00000356046		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
intron-5UTR	ENST00000488155	ENST00000236255		TCGA	RV	CESC	TCGA-DS-A1O9-01A	NIPAL3	chr1	24771734	+	GRHL3	chr1	24657916	+
5CDS-intron	ENST00000263388	ENST00000263377		TCGA	RV	CESC	TCGA-HM-A6W2-01A	NOTCH3	chr19	15308311	-	BRD4	chr19	15360101	-
5CDS-intron	ENST00000263388	ENST00000371835		TCGA	RV	CESC	TCGA-HM-A6W2-01A	NOTCH3	chr19	15308311	-	BRD4	chr19	15360101	-
5CDS-intron	ENST00000263388	ENST00000360016		TCGA	RV	CESC	TCGA-HM-A6W2-01A	NOTCH3	chr19	15308311	-	BRD4	chr19	15360101	-
5CDS-intron	ENST00000263388	ENST00000602230		TCGA	RV	CESC	TCGA-HM-A6W2-01A	NOTCH3	chr19	15308311	-	BRD4	chr19	15360101	-
Frame-shit	ENST00000448841	ENST00000369902		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000448841	ENST00000369899		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000448841	ENST00000423559		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
5CDS-3UTR	ENST00000448841	ENST00000471000		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000369889	ENST00000369902		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000369889	ENST00000369899		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000369889	ENST00000423559		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3UTR	ENST00000369889	ENST00000471000		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
5UTR-3UTR	ENST00000279249	ENST00000524482		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
5UTR-3UTR	ENST00000279249	ENST00000534078		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
5UTR-3UTR	ENST00000279249	ENST00000526171		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
5UTR-3UTR	ENST00000279249	ENST00000279242		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
5UTR-intron	ENST00000279249	ENST00000531705		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000533419	ENST00000524482		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000533419	ENST00000534078		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000533419	ENST00000526171		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000533419	ENST00000279242		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-intron	ENST00000533419	ENST00000531705		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000544348	ENST00000524482		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000544348	ENST00000534078		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000544348	ENST00000526171		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-3UTR	ENST00000544348	ENST00000279242		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
intron-intron	ENST00000544348	ENST00000531705		TCGA	RV	CESC	TCGA-VS-A8EC-01A	CDC42EP2	chr11	65082425	+	MRPL49	chr11	64892960	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5CDS-intron	ENST00000342922	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000342922	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000342922	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000342922	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402799	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402799	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402799	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402799	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000311027	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000311027	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000311027	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000311027	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000406482	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000406482	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000406482	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000406482	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000407859	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000407859	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000407859	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000407859	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000349238	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000349238	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000349238	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000349238	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395344	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395344	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395344	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395344	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395336	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395336	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395336	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000395336	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402192	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402192	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402192	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000402192	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000405573	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000405573	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000405573	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5CDS-intron	ENST00000405573	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
intron-intron	ENST00000489415	ENST00000378600		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
intron-intron	ENST00000489415	ENST00000378603		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
intron-intron	ENST00000489415	ENST00000256996		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
intron-intron	ENST00000489415	ENST00000378601		TCGA	RV	CESC	TCGA-C5-A7X5-01A	MADD	chr11	47317606	+	DDB2	chr11	47254365	+
5UTR-5UTR	ENST00000374189	ENST00000451320		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
5UTR-5UTR	ENST00000374189	ENST00000429148		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
5UTR-5UTR	ENST00000374189	ENST00000353617		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
5UTR-5UTR	ENST00000374189	ENST00000405727		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
5UTR-5UTR	ENST00000374189	ENST00000356064		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
5UTR-intron	ENST00000374189	ENST00000511289		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000451320		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000429148		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000353617		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000405727		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000356064		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000374182	ENST00000511289		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000451320		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000429148		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000353617		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000405727		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000356064		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000360332	ENST00000511289		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000451320		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000429148		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000353617		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000405727		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000356064		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000374174	ENST00000511289		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000451320		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000429148		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000353617		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000405727		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000356064		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000395611	ENST00000511289		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000451320		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000429148		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000353617		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000405727		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000356064		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000459755	ENST00000511289		TCGA	RV	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49514864	+	ARFIP1	chr4	153750777	+
In-frame	ENST00000397661	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000397661	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000592199	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000592199	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000587760	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000587760	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000585575	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000585575	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000360105	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000360105	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000588228	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000588228	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000587260	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000587260	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
In-frame	ENST00000358552	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-intron	ENST00000358552	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
intron-3CDS	ENST00000588680	ENST00000251472		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
intron-intron	ENST00000588680	ENST00000591495		TCGA	RV	CESC	TCGA-VS-A952-01A	NFIX	chr19	13136366	+	MAST1	chr19	12975623	+
5CDS-5UTR	ENST00000374736	ENST00000538962		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000374736	ENST00000309195		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000374736	ENST00000407693		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000374736	ENST00000238248		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000494467	ENST00000538962		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000494467	ENST00000309195		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000494467	ENST00000407693		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000494467	ENST00000238248		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000423487	ENST00000538962		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000423487	ENST00000309195		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000423487	ENST00000407693		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
5CDS-5UTR	ENST00000423487	ENST00000238248		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000374733	ENST00000538962		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000374733	ENST00000309195		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000374733	ENST00000407693		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
intron-5UTR	ENST00000374733	ENST00000238248		TCGA	RV	CESC	TCGA-ZJ-A8QO-01A	ABCA1	chr9	107665895	-	PTGR1	chr9	114359712	-
Frame-shit	ENST00000434302	ENST00000409293		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
5CDS-5UTR	ENST00000434302	ENST00000469144		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
5CDS-3UTR	ENST00000434302	ENST00000590269		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
Frame-shit	ENST00000438847	ENST00000409293		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
5CDS-5UTR	ENST00000438847	ENST00000469144		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
5CDS-3UTR	ENST00000438847	ENST00000590269		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
3UTR-3CDS	ENST00000604556	ENST00000409293		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
3UTR-5UTR	ENST00000604556	ENST00000469144		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
3UTR-3UTR	ENST00000604556	ENST00000590269		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
Frame-shit	ENST00000262622	ENST00000409293		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
5CDS-5UTR	ENST00000262622	ENST00000469144		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
5CDS-3UTR	ENST00000262622	ENST00000590269		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	CHST8	chr19	34180297	+	C19orf24	chr19	1278776	+
In-frame	ENST00000359282	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359282	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359282	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359282	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359282	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000603815	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000603815	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000603815	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000603815	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000603815	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000437231	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000437231	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000437231	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000437231	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000437231	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000447282	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000447282	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000447282	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000447282	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000447282	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000549863	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000549863	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000549863	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000549863	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000549863	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
In-frame	ENST00000359462	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359462	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359462	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359462	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000359462	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000546463	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546463	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546463	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546463	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000546463	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000552296	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552296	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552296	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552296	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552296	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000552819	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552819	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552819	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552819	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000552819	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000455667	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000455667	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000455667	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000455667	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000455667	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000439930	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439930	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439930	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439930	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439930	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000548933	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548933	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548933	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548933	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548933	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000541275	ENST00000280326		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000541275	ENST00000503026		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000541275	ENST00000515390		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000541275	ENST00000515676		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-intron	ENST00000541275	ENST00000506600		TCGA	RV	CESC	TCGA-BI-A0VS-01A	PCBP2	chr12	53873616	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000404072	ENST00000323205		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
intron-3CDS	ENST00000404072	ENST00000248924		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
intron-3UTR	ENST00000404072	ENST00000415371		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
intron-3CDS	ENST00000468288	ENST00000323205		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
intron-3CDS	ENST00000468288	ENST00000248924		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
intron-3UTR	ENST00000468288	ENST00000415371		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
5UTR-3CDS	ENST00000356976	ENST00000323205		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
5UTR-3CDS	ENST00000356976	ENST00000248924		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
5UTR-3UTR	ENST00000356976	ENST00000415371		TCGA	RV	CESC	TCGA-EA-A556-01A	PICK1	chr22	38453594	+	GCAT	chr22	38209470	+
Frame-shit	ENST00000540980	ENST00000540480		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000540980	ENST00000537664		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000540980	ENST00000476287		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000540980	ENST00000252510		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
5CDS-3UTR	ENST00000540980	ENST00000496635		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000392092	ENST00000540480		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000392092	ENST00000537664		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000392092	ENST00000476287		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000392092	ENST00000252510		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
5CDS-3UTR	ENST00000392092	ENST00000496635		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000230354	ENST00000540480		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000230354	ENST00000537664		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000230354	ENST00000476287		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
Frame-shit	ENST00000230354	ENST00000252510		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
5CDS-3UTR	ENST00000230354	ENST00000496635		TCGA	RV	CESC	TCGA-EA-A556-01A	TBP	chr6	170873720	+	FAM120B	chr6	170713638	+
intron-intron	ENST00000245907	ENST00000216297		TCGA	RV	CESC	TCGA-Q1-A5R1-01A	C3	chr19	6677846	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000245907	ENST00000555943		TCGA	RV	CESC	TCGA-Q1-A5R1-01A	C3	chr19	6677846	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000599668	ENST00000216297		TCGA	RV	CESC	TCGA-Q1-A5R1-01A	C3	chr19	6677846	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000599668	ENST00000555943		TCGA	RV	CESC	TCGA-Q1-A5R1-01A	C3	chr19	6677846	-	SUPT16H	chr14	21829491	-
intron-3CDS	ENST00000519824	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000519824	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-intron	ENST00000519824	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000522746	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000522746	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-intron	ENST00000522746	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000523509	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000523509	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-intron	ENST00000523509	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000401979	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000401979	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-intron	ENST00000401979	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000519110	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000519110	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-intron	ENST00000519110	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000522250	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000522250	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-intron	ENST00000522250	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000517654	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000517654	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-intron	ENST00000517654	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000519540	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000519540	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-intron	ENST00000519540	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000522941	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-3CDS	ENST00000522941	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
intron-intron	ENST00000522941	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000518879	ENST00000357668		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-3CDS	ENST00000518879	ENST00000518721		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
5UTR-intron	ENST00000518879	ENST00000520625		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FAM49B	chr8	130983189	-	ASAP1	chr8	131165051	-
In-frame	ENST00000335255	ENST00000298834		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
In-frame	ENST00000335255	ENST00000426438		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
In-frame	ENST00000335255	ENST00000314845		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
Frame-shit	ENST00000335255	ENST00000533727		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
Frame-shit	ENST00000335255	ENST00000534300		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
Frame-shit	ENST00000335255	ENST00000458649		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
Frame-shit	ENST00000335255	ENST00000528950		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
5CDS-intron	ENST00000335255	ENST00000529963		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000298834		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000426438		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000314845		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000533727		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000534300		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000458649		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-3CDS	ENST00000529652	ENST00000528950		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
intron-intron	ENST00000529652	ENST00000529963		TCGA	RV	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	AMBRA1	chr11	46419493	-
3UTR-intron	ENST00000378565	ENST00000518164		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000521291		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000396070		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000287038		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000523172		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000518164		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000521291		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000396070		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000287038		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000523172		TCGA	RV	CESC	TCGA-EA-A5O9-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
In-frame	ENST00000534313	ENST00000317568		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000534313	ENST00000531296		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000534313	ENST00000355991		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000534313	ENST00000416776		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
In-frame	ENST00000527525	ENST00000317568		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527525	ENST00000531296		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527525	ENST00000355991		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527525	ENST00000416776		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
In-frame	ENST00000394224	ENST00000317568		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000394224	ENST00000531296		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000394224	ENST00000355991		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000394224	ENST00000416776		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
In-frame	ENST00000394227	ENST00000317568		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000394227	ENST00000531296		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000394227	ENST00000355991		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000394227	ENST00000416776		TCGA	RV	CESC	TCGA-DS-A1O9-01A	SIPA1	chr11	65412600	+	FRMD8	chr11	65178713	+
In-frame	ENST00000418703	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000418703	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000418703	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000418703	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000418703	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000261740	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000261740	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000261740	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000261740	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000261740	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000392719	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000392719	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000392719	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000392719	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000392719	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000346520	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000346520	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000346520	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000346520	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000346520	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000541794	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000541794	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000541794	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000541794	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000541794	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000536838	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000536838	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000536838	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000536838	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000536838	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000544971	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000544971	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000544971	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000544971	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000544971	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000537083	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000537083	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000537083	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
In-frame	ENST00000537083	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
5CDS-intron	ENST00000537083	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-3CDS	ENST00000536570	ENST00000355312		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-3CDS	ENST00000536570	ENST00000356259		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-3CDS	ENST00000536570	ENST00000338373		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-3CDS	ENST00000536570	ENST00000360185		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000343646		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000354574		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000457474		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000361006		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000553118		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000551209		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000548655		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000547815		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
intron-intron	ENST00000536570	ENST00000320063		TCGA	RV	CESC	TCGA-IR-A3LI-01A	TRPV4	chr12	110230168	-	GIT2	chr12	110391039	-
Frame-shit	ENST00000305533	ENST00000296490		TCGA	RV	CESC	TCGA-EK-A2PG-01A	TWF2	chr3	52273008	-	WDR82	chr3	52291535	-
Frame-shit	ENST00000499914	ENST00000296490		TCGA	RV	CESC	TCGA-EK-A2PG-01A	TWF2	chr3	52273008	-	WDR82	chr3	52291535	-
In-frame	ENST00000608083	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000608083	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000608083	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377855	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000377855	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000545482	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000545482	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000361521	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000361521	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377842	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000377842	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000377845	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000377845	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000520777		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000360522		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000378710		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000357210		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000355826		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000518681		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000505820		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000378712		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000504599		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
In-frame	ENST00000541130	ENST00000378708		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
5CDS-intron	ENST00000541130	ENST00000512004		TCGA	RV	CESC	TCGA-C5-A8YQ-01A	ACOT7	chr1	6378552	-	MIB2	chr1	1560666	+
Frame-shit	ENST00000584601	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000584601	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584601	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000406381	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000406381	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000406381	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000541774	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000541774	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000541774	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000445658	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000445658	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000445658	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000540147	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000540147	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540147	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000584450	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000584450	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000584450	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000269571	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000269571	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000269571	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000578199	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000578199	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000578199	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000540042	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000540042	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
5CDS-intron	ENST00000540042	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-3CDS	ENST00000584888	ENST00000346872		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-3CDS	ENST00000584888	ENST00000394189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000439167		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000535189		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000377944		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000377945		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000377952		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000377958		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000346243		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000350532		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000351680		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000467757		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000439016		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
intron-intron	ENST00000584888	ENST00000583368		TCGA	RV	CESC	TCGA-C5-A2LX-01A	ERBB2	chr17	37872858	+	IKZF3	chr17	37985741	-
Frame-shit	ENST00000400556	ENST00000328827		TCGA	RV	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80014987	-
5CDS-intron	ENST00000400556	ENST00000547571		TCGA	RV	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80014987	-
Frame-shit	ENST00000400555	ENST00000328827		TCGA	RV	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80014987	-
5CDS-intron	ENST00000400555	ENST00000547571		TCGA	RV	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80014987	-
intron-3CDS	ENST00000580583	ENST00000328827		TCGA	RV	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80014987	-
intron-intron	ENST00000580583	ENST00000547571		TCGA	RV	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000342572	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
5UTR-3CDS	ENST00000342572	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
5UTR-3CDS	ENST00000342572	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000306645	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000306645	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000306645	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000437807	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000437807	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000437807	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
5UTR-3CDS	ENST00000336995	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
5UTR-3CDS	ENST00000336995	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
5UTR-3CDS	ENST00000336995	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000434650	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000434650	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000434650	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000583617	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000583617	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000583617	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000577436	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000577436	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000577436	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000585064	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000585064	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000585064	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000577732	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000577732	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000577732	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000578919	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000578919	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000578919	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000585080	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000585080	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000585080	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000578913	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000578913	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
Frame-shit	ENST00000578913	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000583359	ENST00000337014		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000583359	ENST00000577944		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
In-frame	ENST00000583359	ENST00000327949		TCGA	RV	CESC	TCGA-DG-A2KM-01A	C17orf62	chr17	80403740	-	HEXDC	chr17	80391534	+
5CDS-intron	ENST00000309311	ENST00000233057		TCGA	RV	CESC	TCGA-LP-A5U2-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000309311	ENST00000395127		TCGA	RV	CESC	TCGA-LP-A5U2-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000309311	ENST00000405334		TCGA	RV	CESC	TCGA-LP-A5U2-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000600720	ENST00000233057		TCGA	RV	CESC	TCGA-LP-A5U2-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000600720	ENST00000395127		TCGA	RV	CESC	TCGA-LP-A5U2-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000600720	ENST00000405334		TCGA	RV	CESC	TCGA-LP-A5U2-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000471231	ENST00000324685		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000471231	ENST00000402121		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000471231	ENST00000563683		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000471231	ENST00000357890		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
5CDS-3UTR	ENST00000471231	ENST00000567365		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000338343	ENST00000324685		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000338343	ENST00000402121		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000338343	ENST00000563683		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000338343	ENST00000357890		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
5CDS-3UTR	ENST00000338343	ENST00000567365		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000562319	ENST00000324685		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000562319	ENST00000402121		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000562319	ENST00000563683		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000562319	ENST00000357890		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
5CDS-3UTR	ENST00000562319	ENST00000567365		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000380310	ENST00000324685		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000380310	ENST00000402121		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000380310	ENST00000563683		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000380310	ENST00000357890		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
5CDS-3UTR	ENST00000380310	ENST00000567365		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000565690	ENST00000324685		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000565690	ENST00000402121		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000565690	ENST00000563683		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
Frame-shit	ENST00000565690	ENST00000357890		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
5CDS-3UTR	ENST00000565690	ENST00000567365		TCGA	RV	CESC	TCGA-DS-A1OC-01A	FBXL19	chr16	30941905	+	RNF40	chr16	30785259	+
5UTR-3CDS	ENST00000441788	ENST00000589123		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-3CDS	ENST00000441788	ENST00000346156		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-3CDS	ENST00000441788	ENST00000395111		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-3CDS	ENST00000441788	ENST00000586919		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-3CDS	ENST00000441788	ENST00000341919		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-3CDS	ENST00000441788	ENST00000590282		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-3CDS	ENST00000441788	ENST00000443272		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
5UTR-intron	ENST00000441788	ENST00000588839		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000589123		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000346156		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000395111		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000586919		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000341919		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000590282		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000313639	ENST00000443272		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-intron	ENST00000313639	ENST00000588839		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000589123		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000346156		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000395111		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000586919		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000341919		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000590282		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-3CDS	ENST00000395095	ENST00000443272		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
intron-intron	ENST00000395095	ENST00000588839		TCGA	RV	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	NFIC	chr19	3381710	+
In-frame	ENST00000535193	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
In-frame	ENST00000543771	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
In-frame	ENST00000381306	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
In-frame	ENST00000381309	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
5UTR-3CDS	ENST00000442236	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
3UTR-3CDS	ENST00000489243	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
intron-3CDS	ENST00000536108	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
intron-3CDS	ENST00000428870	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
Frame-shit	ENST00000401787	ENST00000190165		TCGA	RV	CESC	TCGA-EK-A2IR-01A	KDM4C	chr9	6814745	+	DMRT3	chr9	990041	+
5CDS-5UTR	ENST00000296444	ENST00000328631		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000340879		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000432678		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000431721		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000449610		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000413298		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000450045		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000446860		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000417896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000443964		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000436134		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000296444	ENST00000453202		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000328631		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000340879		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000432678		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000431721		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000449610		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000413298		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000450045		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000446860		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000417896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000443964		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000436134		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000444115	ENST00000453202		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000328631		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000340879		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000432678		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000431721		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000449610		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000413298		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000450045		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000446860		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000417896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000443964		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000436134		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000426002	ENST00000453202		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000328631		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000340879		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000432678		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000431721		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000449610		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000413298		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000450045		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000446860		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000417896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000443964		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000436134		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000465449	ENST00000453202		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000328631		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000340879		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000432678		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000431721		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000449610		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000413298		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000450045		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000446860		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000417896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000443964		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000436134		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000442747	ENST00000453202		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000328631		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000340879		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000432678		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000431721		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000449610		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000413298		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000450045		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000446860		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000417896		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000443964		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000436134		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
intron-5UTR	ENST00000443308	ENST00000453202		TCGA	RV	CESC	TCGA-VS-A8EC-01A	SHISA5	chr3	48538570	-	IP6K2	chr3	48732851	-
5CDS-5UTR	ENST00000232165	ENST00000403028		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000232165	ENST00000329873		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-3UTR	ENST00000232165	ENST00000559223		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000232165	ENST00000558653		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000232165	ENST00000251250		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-intron	ENST00000232165	ENST00000415425		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000438097	ENST00000403028		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000438097	ENST00000329873		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-3UTR	ENST00000438097	ENST00000559223		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000438097	ENST00000558653		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000438097	ENST00000251250		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-intron	ENST00000438097	ENST00000415425		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000566215	ENST00000403028		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000566215	ENST00000329873		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-3UTR	ENST00000566215	ENST00000559223		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000566215	ENST00000558653		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000566215	ENST00000251250		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-intron	ENST00000566215	ENST00000415425		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000428984	ENST00000403028		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000428984	ENST00000329873		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-3UTR	ENST00000428984	ENST00000559223		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000428984	ENST00000558653		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000428984	ENST00000251250		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-intron	ENST00000428984	ENST00000415425		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000397954	ENST00000403028		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000397954	ENST00000329873		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-3UTR	ENST00000397954	ENST00000559223		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000397954	ENST00000558653		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000397954	ENST00000251250		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-intron	ENST00000397954	ENST00000415425		TCGA	RV	CESC	TCGA-IR-A3LB-01A	UBE3A	chr15	25620612	-	DTWD1	chr15	49917310	+
5CDS-5UTR	ENST00000418929	ENST00000301200		TCGA	RV	CESC	TCGA-C5-A7X3-01A	PRR12	chr19	50124879	+	CDC42EP5	chr19	54982906	-
5CDS-5UTR	ENST00000418929	ENST00000472703		TCGA	RV	CESC	TCGA-C5-A7X3-01A	PRR12	chr19	50124879	+	CDC42EP5	chr19	54982906	-
Frame-shit	ENST00000379834	ENST00000503581		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
Frame-shit	ENST00000379834	ENST00000370621		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
Frame-shit	ENST00000379834	ENST00000370616		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000393380		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000342421		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000370618		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000486069		TCGA	RV	CESC	TCGA-ZJ-A8QQ-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000368738	ENST00000322776		TCGA	RV	CESC	TCGA-EK-A2PL-01A	S100A9	chr1	153333503	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368738	ENST00000532303		TCGA	RV	CESC	TCGA-EK-A2PL-01A	S100A9	chr1	153333503	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368738	ENST00000529927		TCGA	RV	CESC	TCGA-EK-A2PL-01A	S100A9	chr1	153333503	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368738	ENST00000415352		TCGA	RV	CESC	TCGA-EK-A2PL-01A	S100A9	chr1	153333503	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368738	ENST00000526169		TCGA	RV	CESC	TCGA-EK-A2PL-01A	S100A9	chr1	153333503	+	NDUFV1	chr11	67375697	+
intron-3CDS	ENST00000419821	ENST00000543473		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000419821	ENST00000397564		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-intron	ENST00000419821	ENST00000541280		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
5UTR-3CDS	ENST00000392533	ENST00000543473		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
5UTR-3CDS	ENST00000392533	ENST00000397564		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
5UTR-intron	ENST00000392533	ENST00000541280		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000537952	ENST00000543473		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000537952	ENST00000397564		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-intron	ENST00000537952	ENST00000541280		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000543709	ENST00000543473		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000543709	ENST00000397564		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-intron	ENST00000543709	ENST00000541280		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000536979	ENST00000543473		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-3CDS	ENST00000536979	ENST00000397564		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
intron-intron	ENST00000536979	ENST00000541280		TCGA	RV	CESC	TCGA-DS-A0VM-01A	TAOK3	chr12	118810453	-	SUDS3	chr12	118823919	+
Frame-shit	ENST00000306065	ENST00000444215		TCGA	RV	CESC	TCGA-DG-A2KM-01A	ANKRD27	chr19	33106564	-	TDRD12	chr19	33222631	+
Frame-shit	ENST00000306065	ENST00000421545		TCGA	RV	CESC	TCGA-DG-A2KM-01A	ANKRD27	chr19	33106564	-	TDRD12	chr19	33222631	+
intron-3CDS	ENST00000587352	ENST00000444215		TCGA	RV	CESC	TCGA-DG-A2KM-01A	ANKRD27	chr19	33106564	-	TDRD12	chr19	33222631	+
intron-3CDS	ENST00000587352	ENST00000421545		TCGA	RV	CESC	TCGA-DG-A2KM-01A	ANKRD27	chr19	33106564	-	TDRD12	chr19	33222631	+
Frame-shit	ENST00000357559	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5CDS-3UTR	ENST00000357559	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5UTR-3CDS	ENST00000305586	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5UTR-3UTR	ENST00000305586	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
intron-3CDS	ENST00000491674	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
intron-3UTR	ENST00000491674	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
intron-3CDS	ENST00000491062	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
intron-3UTR	ENST00000491062	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5UTR-3CDS	ENST00000468861	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5UTR-3UTR	ENST00000468861	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
Frame-shit	ENST00000445140	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5CDS-3UTR	ENST00000445140	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
Frame-shit	ENST00000480918	ENST00000454872		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5CDS-3UTR	ENST00000480918	ENST00000473253		TCGA	RV	CESC	TCGA-C5-A1ML-01A	FXR1	chr3	180653019	+	NAALADL2	chr3	175165017	+
5CDS-intron	ENST00000339276	ENST00000270189		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000339276	ENST00000429089		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000339276	ENST00000220809		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000339276	ENST00000352041		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000339276	ENST00000519510		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000339276	ENST00000429710		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000339276	ENST00000524009		TCGA	RV	CESC	TCGA-VS-A958-01A	SFN	chr1	27190947	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000331925	ENST00000360359		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000535627		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000470698		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000360359		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000535627		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000470698		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000360359		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000535627		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000470698		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000360359		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000535627		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000470698		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000260270	ENST00000524908		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FDX1	chr11	110306682	+	KNCN	chr1	47015674	-
5CDS-intron	ENST00000260270	ENST00000481882		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FDX1	chr11	110306682	+	KNCN	chr1	47015674	-
5CDS-intron	ENST00000260270	ENST00000396314		TCGA	RV	CESC	TCGA-C5-A7X5-01A	FDX1	chr11	110306682	+	KNCN	chr1	47015674	-
Frame-shit	ENST00000346145	ENST00000381916		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000346145	ENST00000333602		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000346145	ENST00000428187		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000346145	ENST00000392400		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000346145	ENST00000316664		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
5CDS-5UTR	ENST00000346145	ENST00000468819		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000349607	ENST00000381916		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000349607	ENST00000333602		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000349607	ENST00000428187		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000349607	ENST00000392400		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000349607	ENST00000316664		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
5CDS-5UTR	ENST00000349607	ENST00000468819		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000463781	ENST00000381916		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000463781	ENST00000333602		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000463781	ENST00000428187		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000463781	ENST00000392400		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000463781	ENST00000316664		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
5CDS-5UTR	ENST00000463781	ENST00000468819		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000475231	ENST00000381916		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000475231	ENST00000333602		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000475231	ENST00000428187		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000475231	ENST00000392400		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
Frame-shit	ENST00000475231	ENST00000316664		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
5CDS-5UTR	ENST00000475231	ENST00000468819		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
intron-3CDS	ENST00000478685	ENST00000381916		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
intron-3CDS	ENST00000478685	ENST00000333602		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
intron-3CDS	ENST00000478685	ENST00000428187		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
intron-3CDS	ENST00000478685	ENST00000392400		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
intron-3CDS	ENST00000478685	ENST00000316664		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
intron-5UTR	ENST00000478685	ENST00000468819		TCGA	RV	CESC	TCGA-C5-A8XK-01A	MUC4	chr3	195495893	-	TNK2	chr3	195610180	-
5CDS-intron	ENST00000361677	ENST00000443584		TCGA	RV	CESC	TCGA-4J-AA1J-01A	RUNDC1	chr17	41142453	+	RGS9	chr17	63223393	+
5CDS-intron	ENST00000361677	ENST00000449996		TCGA	RV	CESC	TCGA-4J-AA1J-01A	RUNDC1	chr17	41142453	+	RGS9	chr17	63223393	+
5CDS-intron	ENST00000361677	ENST00000262406		TCGA	RV	CESC	TCGA-4J-AA1J-01A	RUNDC1	chr17	41142453	+	RGS9	chr17	63223393	+
5CDS-intron	ENST00000361677	ENST00000577186		TCGA	RV	CESC	TCGA-4J-AA1J-01A	RUNDC1	chr17	41142453	+	RGS9	chr17	63223393	+
5UTR-3CDS	ENST00000344337	ENST00000310169		TCGA	RV	CESC	TCGA-LP-A5U2-01A	KPNA1	chr3	122233604	-	CHRNA9	chr4	40350899	+
5UTR-intron	ENST00000344337	ENST00000502377		TCGA	RV	CESC	TCGA-LP-A5U2-01A	KPNA1	chr3	122233604	-	CHRNA9	chr4	40350899	+
intron-3CDS	ENST00000466923	ENST00000310169		TCGA	RV	CESC	TCGA-LP-A5U2-01A	KPNA1	chr3	122233604	-	CHRNA9	chr4	40350899	+
intron-intron	ENST00000466923	ENST00000502377		TCGA	RV	CESC	TCGA-LP-A5U2-01A	KPNA1	chr3	122233604	-	CHRNA9	chr4	40350899	+
5UTR-3UTR	ENST00000533486	ENST00000528638		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
5UTR-3UTR	ENST00000533486	ENST00000313578		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
5UTR-3UTR	ENST00000534141	ENST00000528638		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
5UTR-3UTR	ENST00000534141	ENST00000313578		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000260056	ENST00000528638		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000260056	ENST00000313578		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
5UTR-3UTR	ENST00000527633	ENST00000528638		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
5UTR-3UTR	ENST00000527633	ENST00000313578		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000525117	ENST00000528638		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000525117	ENST00000313578		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000532548	ENST00000528638		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
intron-3UTR	ENST00000532548	ENST00000313578		TCGA	RV	CESC	TCGA-VS-A8EH-01A	RAB30	chr11	82782733	-	AQP11	chr11	77314601	+
5CDS-intron	ENST00000237530	ENST00000267101		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000237530	ENST00000450146		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000237530	ENST00000415288		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000237530	ENST00000553131		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000237530	ENST00000411731		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000237530	ENST00000549832		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373622	ENST00000267101		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373622	ENST00000450146		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373622	ENST00000415288		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373622	ENST00000553131		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373622	ENST00000411731		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373622	ENST00000549832		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000470352	ENST00000267101		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000470352	ENST00000450146		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000470352	ENST00000415288		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000470352	ENST00000553131		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000470352	ENST00000411731		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000470352	ENST00000549832		TCGA	RV	CESC	TCGA-EA-A3HS-01A	RPN2	chr20	35870020	+	ERBB3	chr12	56492035	+
Frame-shit	ENST00000339276	ENST00000280326		TCGA	RV	CESC	TCGA-JW-A5VL-01A	SFN	chr1	27190947	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339276	ENST00000503026		TCGA	RV	CESC	TCGA-JW-A5VL-01A	SFN	chr1	27190947	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339276	ENST00000515390		TCGA	RV	CESC	TCGA-JW-A5VL-01A	SFN	chr1	27190947	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339276	ENST00000515676		TCGA	RV	CESC	TCGA-JW-A5VL-01A	SFN	chr1	27190947	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000339276	ENST00000506600		TCGA	RV	CESC	TCGA-JW-A5VL-01A	SFN	chr1	27190947	+	CCT5	chr5	10250033	+
5CDS-5UTR	ENST00000462484	ENST00000372124		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000462484	ENST00000339463		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000462484	ENST00000450530		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000462484	ENST00000534944		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000462484	ENST00000372122		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000462484	ENST00000372123		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5UTR-5UTR	ENST00000334856	ENST00000372124		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5UTR-5UTR	ENST00000334856	ENST00000339463		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5UTR-5UTR	ENST00000334856	ENST00000450530		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5UTR-5UTR	ENST00000334856	ENST00000534944		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5UTR-5UTR	ENST00000334856	ENST00000372122		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5UTR-5UTR	ENST00000334856	ENST00000372123		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000460843	ENST00000372124		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000460843	ENST00000339463		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000460843	ENST00000450530		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000460843	ENST00000534944		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000460843	ENST00000372122		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
5CDS-5UTR	ENST00000460843	ENST00000372123		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
3UTR-5UTR	ENST00000371394	ENST00000372124		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
3UTR-5UTR	ENST00000371394	ENST00000339463		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
3UTR-5UTR	ENST00000371394	ENST00000450530		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
3UTR-5UTR	ENST00000371394	ENST00000534944		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
3UTR-5UTR	ENST00000371394	ENST00000372122		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
3UTR-5UTR	ENST00000371394	ENST00000372123		TCGA	RV	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135862046	+
intron-intron	ENST00000544892	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000544892	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000544892	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000544892	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000544892	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000320031	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000320031	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000320031	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000320031	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000320031	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000007722	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000007722	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000007722	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000007722	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000007722	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A2LV-01A	ITGA3	chr17	48167844	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000330722	ENST00000300134		TCGA	RV	CESC	TCGA-HM-A4S6-01A	KRT6A	chr12	52880958	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000330722	ENST00000538913		TCGA	RV	CESC	TCGA-HM-A4S6-01A	KRT6A	chr12	52880958	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000330722	ENST00000543873		TCGA	RV	CESC	TCGA-HM-A4S6-01A	KRT6A	chr12	52880958	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000330722	ENST00000556155		TCGA	RV	CESC	TCGA-HM-A4S6-01A	KRT6A	chr12	52880958	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000330722	ENST00000537215		TCGA	RV	CESC	TCGA-HM-A4S6-01A	KRT6A	chr12	52880958	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000330722	ENST00000454075		TCGA	RV	CESC	TCGA-HM-A4S6-01A	KRT6A	chr12	52880958	-	STAT6	chr12	57496773	-
5UTR-3CDS	ENST00000381352	ENST00000266517		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
5UTR-3CDS	ENST00000381352	ENST00000335148		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
intron-3CDS	ENST00000405154	ENST00000266517		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
intron-3CDS	ENST00000405154	ENST00000335148		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
5UTR-3CDS	ENST00000542865	ENST00000266517		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
5UTR-3CDS	ENST00000542865	ENST00000335148		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
5UTR-3CDS	ENST00000541490	ENST00000266517		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
5UTR-3CDS	ENST00000541490	ENST00000335148		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
intron-3CDS	ENST00000282884	ENST00000266517		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
intron-3CDS	ENST00000282884	ENST00000335148		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
3UTR-3CDS	ENST00000538081	ENST00000266517		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
3UTR-3CDS	ENST00000538081	ENST00000335148		TCGA	RV	CESC	TCGA-BI-A0VS-01A	RASSF8	chr12	26148063	+	ETNK1	chr12	22796697	+
intron-intron	ENST00000421351	ENST00000270189		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
intron-intron	ENST00000421351	ENST00000429089		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
intron-intron	ENST00000421351	ENST00000220809		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
intron-intron	ENST00000421351	ENST00000352041		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
intron-intron	ENST00000421351	ENST00000519510		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
intron-intron	ENST00000421351	ENST00000429710		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
intron-intron	ENST00000421351	ENST00000524009		TCGA	RV	CESC	TCGA-HM-A4S6-01A	PERP	chr6	138411926	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000454817	ENST00000257497		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000454817	ENST00000376911		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000454817	ENST00000491192		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000328333	ENST00000257497		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000328333	ENST00000376911		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000328333	ENST00000491192		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000470076	ENST00000257497		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000470076	ENST00000376911		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000470076	ENST00000491192		TCGA	RV	CESC	TCGA-HM-A4S6-01A	COL7A1	chr3	48601506	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000591778	ENST00000251195		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000591778	ENST00000466308		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000591778	ENST00000373220		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000591778	ENST00000520551		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000591778	ENST00000318121		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000262776	ENST00000251195		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000262776	ENST00000466308		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000262776	ENST00000373220		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000262776	ENST00000520551		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000262776	ENST00000318121		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000585407	ENST00000251195		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000585407	ENST00000466308		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000585407	ENST00000373220		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000585407	ENST00000520551		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
intron-intron	ENST00000585407	ENST00000318121		TCGA	RV	CESC	TCGA-VS-A9UO-01A	LGALS3BP	chr17	76967338	-	CLSPN	chr1	36214444	-
5CDS-intron	ENST00000562057	ENST00000257497		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000562057	ENST00000376911		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000562057	ENST00000491192		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
3UTR-intron	ENST00000344051	ENST00000257497		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
3UTR-intron	ENST00000344051	ENST00000376911		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
3UTR-intron	ENST00000344051	ENST00000491192		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000431806	ENST00000257497		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000431806	ENST00000376911		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000431806	ENST00000491192		TCGA	RV	CESC	TCGA-EA-A3HS-01A	SPINT1	chr15	41149852	+	ANXA1	chr9	75772570	+
Frame-shit	ENST00000272427	ENST00000471595		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000478469		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000251654		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000483687		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000490504		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000466072		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000482086		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000468777		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000462637		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000272427	ENST00000469217		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-3UTR	ENST00000272427	ENST00000474833		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-3CDS	ENST00000490919	ENST00000471595		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000478469		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000251654		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000483687		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000490504		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000466072		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000482086		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000468777		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000462637		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-intron	ENST00000490919	ENST00000469217		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
intron-3UTR	ENST00000490919	ENST00000474833		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
Frame-shit	ENST00000410104	ENST00000471595		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000478469		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000251654		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000483687		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000490504		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000466072		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000482086		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000468777		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000462637		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000410104	ENST00000469217		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-3UTR	ENST00000410104	ENST00000474833		TCGA	RV	CESC	TCGA-VS-A953-01A	EXOC6B	chr2	73052927	-	PCCB	chr3	136045645	+
5CDS-intron	ENST00000336861	ENST00000270189		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000336861	ENST00000429089		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000336861	ENST00000220809		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000336861	ENST00000352041		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000336861	ENST00000519510		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000336861	ENST00000429710		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000336861	ENST00000524009		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000270189		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000429089		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000220809		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000352041		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000519510		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000429710		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000246635	ENST00000524009		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000270189		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000429089		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000220809		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000352041		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000519510		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000429710		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587544	ENST00000524009		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000270189		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000429089		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000220809		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000352041		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000519510		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000429710		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
intron-intron	ENST00000587118	ENST00000524009		TCGA	RV	CESC	TCGA-MA-AA43-01A	KRT13	chr17	39657233	-	PLAT	chr8	42051245	-
5CDS-5UTR	ENST00000330722	ENST00000228741		TCGA	RV	CESC	TCGA-DG-A2KM-01A	KRT6A	chr12	52880958	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000330722	ENST00000552142		TCGA	RV	CESC	TCGA-DG-A2KM-01A	KRT6A	chr12	52880958	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000330722	ENST00000549529		TCGA	RV	CESC	TCGA-DG-A2KM-01A	KRT6A	chr12	52880958	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000248553	ENST00000270189		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000248553	ENST00000429089		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000248553	ENST00000220809		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000248553	ENST00000352041		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000248553	ENST00000519510		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000248553	ENST00000429710		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000248553	ENST00000524009		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000270189		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000429089		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000220809		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000352041		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000519510		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000429710		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000429938	ENST00000524009		TCGA	RV	CESC	TCGA-EK-A2PM-01A	HSPB1	chr7	75933612	+	PLAT	chr8	42051245	-
Frame-shit	ENST00000539801	ENST00000381750		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000539801	ENST00000381730		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000539801	ENST00000381728		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000539801	ENST00000448872		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000539801	ENST00000381732		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000539801	ENST00000445485		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
Frame-shit	ENST00000381652	ENST00000381750		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000381652	ENST00000381730		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000381652	ENST00000381728		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000381652	ENST00000448872		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000381652	ENST00000381732		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000381652	ENST00000445485		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
Frame-shit	ENST00000544510	ENST00000381750		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000544510	ENST00000381730		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000544510	ENST00000381728		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000544510	ENST00000448872		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000544510	ENST00000381732		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
5CDS-intron	ENST00000544510	ENST00000445485		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
intron-3CDS	ENST00000487310	ENST00000381750		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
intron-intron	ENST00000487310	ENST00000381730		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
intron-intron	ENST00000487310	ENST00000381728		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
intron-intron	ENST00000487310	ENST00000448872		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
intron-intron	ENST00000487310	ENST00000381732		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
intron-intron	ENST00000487310	ENST00000445485		TCGA	RV	CESC	TCGA-PN-A8MA-01A	JAK2	chr9	5090911	+	RCL1	chr9	4834141	+
In-frame	ENST00000361566	ENST00000280326		TCGA	RV	CESC	TCGA-EX-A1H5-01A	KRT19	chr17	39679869	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000361566	ENST00000503026		TCGA	RV	CESC	TCGA-EX-A1H5-01A	KRT19	chr17	39679869	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000361566	ENST00000515390		TCGA	RV	CESC	TCGA-EX-A1H5-01A	KRT19	chr17	39679869	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000361566	ENST00000515676		TCGA	RV	CESC	TCGA-EX-A1H5-01A	KRT19	chr17	39679869	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000361566	ENST00000506600		TCGA	RV	CESC	TCGA-EX-A1H5-01A	KRT19	chr17	39679869	-	CCT5	chr5	10250033	+
In-frame	ENST00000336868	ENST00000302538		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000544583		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000572441		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000574437		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000291107		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000543210		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000336868	ENST00000536794		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
5CDS-intron	ENST00000336868	ENST00000573895		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000302538		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000544583		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000572441		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000574437		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000291107		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000543210		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000577098	ENST00000536794		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000577098	ENST00000573895		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000302538		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000544583		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000572441		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000574437		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000291107		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000543210		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000575801	ENST00000536794		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000575801	ENST00000573895		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000302538		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000544583		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000572441		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000574437		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000291107		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000543210		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000538650	ENST00000536794		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000538650	ENST00000573895		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000302538		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000544583		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000572441		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000574437		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000291107		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000543210		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-3CDS	ENST00000537628	ENST00000536794		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
intron-intron	ENST00000537628	ENST00000573895		TCGA	RV	CESC	TCGA-MY-A913-01A	NXN	chr17	882559	-	ABR	chr17	916404	-
In-frame	ENST00000566620	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000566620	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000566620	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
Frame-shit	ENST00000268613	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
Frame-shit	ENST00000268613	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000268613	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000565636	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000565636	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000565636	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000431540	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000431540	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000431540	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000428848	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000428848	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000428848	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000567445	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000567445	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000567445	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000446376	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
In-frame	ENST00000446376	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5CDS-intron	ENST00000446376	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
intron-3CDS	ENST00000569454	ENST00000283033		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
intron-3CDS	ENST00000569454	ENST00000356957		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
intron-intron	ENST00000569454	ENST00000570917		TCGA	RV	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11792181	-
5UTR-3CDS	ENST00000382004	ENST00000375789		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000382004	ENST00000480913		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000382004	ENST00000375787		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000382004	ENST00000375792		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000443533		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000493926		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000413532		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000411456		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000451411		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000488668		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000430482		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000437889		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000414455		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000490871		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000444699		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000454138		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000400062		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000466207		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000383409		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000400063		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000413655		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000494351		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000424790		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000447101		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000427126		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000473167		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000426149		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000382004	ENST00000434464		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-3CDS	ENST00000358730	ENST00000375789		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000358730	ENST00000480913		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000358730	ENST00000375787		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000358730	ENST00000375792		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000443533		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000493926		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000413532		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000411456		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000451411		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000488668		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000430482		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000437889		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000414455		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000490871		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000444699		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000454138		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000400062		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000466207		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000383409		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000400063		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000413655		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000494351		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000424790		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000447101		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000427126		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000473167		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000426149		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000358730	ENST00000434464		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-3CDS	ENST00000302303	ENST00000375789		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000302303	ENST00000480913		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000302303	ENST00000375787		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-5UTR	ENST00000302303	ENST00000375792		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000443533		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000493926		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000413532		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000411456		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000451411		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000488668		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000430482		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000437889		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000414455		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000490871		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000444699		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000454138		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000400062		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000466207		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000383409		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000400063		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000413655		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000494351		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000424790		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000447101		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000427126		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000473167		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000426149		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5UTR-intron	ENST00000302303	ENST00000434464		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-3CDS	ENST00000381984	ENST00000375789		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000381984	ENST00000480913		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000381984	ENST00000375787		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-5UTR	ENST00000381984	ENST00000375792		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000443533		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000493926		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000413532		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000411456		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000451411		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000488668		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000430482		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000437889		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000414455		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000490871		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000444699		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000454138		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000400062		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000466207		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000383409		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000400063		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000413655		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000494351		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000424790		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000447101		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000427126		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000473167		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000426149		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
intron-intron	ENST00000381984	ENST00000434464		TCGA	RV	CESC	TCGA-VS-A9UT-01A	RFX3	chr9	3525747	-	DDAH2	chr6	31696522	-
5CDS-intron	ENST00000254351	ENST00000270189		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000254351	ENST00000429089		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000254351	ENST00000220809		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000254351	ENST00000352041		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000254351	ENST00000519510		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000254351	ENST00000429710		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000254351	ENST00000524009		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000270189		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000429089		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000220809		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000352041		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000519510		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000429710		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000381150	ENST00000524009		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000270189		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000429089		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000220809		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000352041		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000519510		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000429710		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000403076	ENST00000524009		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000270189		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000429089		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000220809		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000352041		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000519510		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000429710		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
intron-intron	ENST00000482879	ENST00000524009		TCGA	RV	CESC	TCGA-IR-A3LC-01A	SDC1	chr2	20400560	-	PLAT	chr8	42051245	-
Frame-shit	ENST00000354532	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000354532	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000599846	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000599846	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
intron-3CDS	ENST00000596957	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
intron-3CDS	ENST00000596957	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000347545	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000347545	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000378152	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000378152	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000337665	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000337665	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-01A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000390006	ENST00000337014		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000390006	ENST00000577944		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000390006	ENST00000327949		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000309794	ENST00000337014		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000309794	ENST00000577944		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000309794	ENST00000327949		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000345415	ENST00000337014		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000345415	ENST00000577944		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000345415	ENST00000327949		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000457415	ENST00000337014		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000457415	ENST00000577944		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000457415	ENST00000327949		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000412079	ENST00000337014		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000412079	ENST00000577944		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000412079	ENST00000327949		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
3UTR-3CDS	ENST00000581743	ENST00000337014		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
3UTR-3CDS	ENST00000581743	ENST00000577944		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
3UTR-3CDS	ENST00000581743	ENST00000327949		TCGA	RV	CESC	TCGA-VS-A8EK-01A	NARF	chr17	80426772	+	HEXDC	chr17	80397507	+
In-frame	ENST00000246548	ENST00000415930		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
In-frame	ENST00000246548	ENST00000356487		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
In-frame	ENST00000246548	ENST00000586425		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000439527	ENST00000415930		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000439527	ENST00000356487		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000439527	ENST00000586425		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000592791	ENST00000415930		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000592791	ENST00000356487		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000592791	ENST00000586425		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000588585	ENST00000415930		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000588585	ENST00000356487		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
intron-3CDS	ENST00000588585	ENST00000586425		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	UBA2	chr19	34919475	+	GPI	chr19	34869839	+
5CDS-intron	ENST00000295688	ENST00000300134		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000295688	ENST00000538913		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000295688	ENST00000543873		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000295688	ENST00000556155		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000295688	ENST00000537215		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000295688	ENST00000454075		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000368259	ENST00000300134		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000368259	ENST00000538913		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000368259	ENST00000543873		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000368259	ENST00000556155		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000368259	ENST00000537215		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000368259	ENST00000454075		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368261	ENST00000300134		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368261	ENST00000538913		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368261	ENST00000543873		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368261	ENST00000556155		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368261	ENST00000537215		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368261	ENST00000454075		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000472765	ENST00000300134		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000472765	ENST00000538913		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000472765	ENST00000543873		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000472765	ENST00000556155		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000472765	ENST00000537215		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000472765	ENST00000454075		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368256	ENST00000300134		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368256	ENST00000538913		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368256	ENST00000543873		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368256	ENST00000556155		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368256	ENST00000537215		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
intron-intron	ENST00000368256	ENST00000454075		TCGA	RV	CESC	TCGA-EA-A5ZE-01A	CCT3	chr1	156278760	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000379834	ENST00000503581		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
Frame-shit	ENST00000379834	ENST00000370621		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
Frame-shit	ENST00000379834	ENST00000370616		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000393380		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000342421		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000370618		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
5CDS-intron	ENST00000379834	ENST00000486069		TCGA	RV	CESC	TCGA-EK-A2H0-01A	RIOK1	chr6	7414623	+	EYS	chr6	66006012	-
In-frame	ENST00000265857	ENST00000297440		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
In-frame	ENST00000265857	ENST00000313147		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
5CDS-intron	ENST00000265857	ENST00000438961		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
5CDS-intron	ENST00000265857	ENST00000403952		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
In-frame	ENST00000407192	ENST00000297440		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
In-frame	ENST00000407192	ENST00000313147		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
5CDS-intron	ENST00000407192	ENST00000438961		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
5CDS-intron	ENST00000407192	ENST00000403952		TCGA	RV	CESC	TCGA-JW-A5VJ-01A	GET4	chr7	927156	+	HEATR2	chr7	794226	+
In-frame	ENST00000263816	ENST00000453153		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
In-frame	ENST00000263816	ENST00000453929		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
5CDS-5UTR	ENST00000263816	ENST00000495505		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
intron-3CDS	ENST00000443831	ENST00000453153		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
intron-3CDS	ENST00000443831	ENST00000453929		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
intron-5UTR	ENST00000443831	ENST00000495505		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
intron-3CDS	ENST00000461418	ENST00000453153		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
intron-3CDS	ENST00000461418	ENST00000453929		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
intron-5UTR	ENST00000461418	ENST00000495505		TCGA	RV	CESC	TCGA-EK-A2RJ-01A	LRP2	chr2	170018982	-	FASTKD1	chr2	170388000	-
In-frame	ENST00000314103	ENST00000399151		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CHAF1B	chr21	37763966	+	DOPEY2	chr21	37665618	+
5CDS-intron	ENST00000314103	ENST00000492760		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CHAF1B	chr21	37763966	+	DOPEY2	chr21	37665618	+
3UTR-3CDS	ENST00000480486	ENST00000399151		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CHAF1B	chr21	37763966	+	DOPEY2	chr21	37665618	+
3UTR-intron	ENST00000480486	ENST00000492760		TCGA	RV	CESC	TCGA-DS-A1OC-01A	CHAF1B	chr21	37763966	+	DOPEY2	chr21	37665618	+
5CDS-intron	ENST00000311208	ENST00000322776		TCGA	RV	CESC	TCGA-EK-A3GJ-01A	KRT17	chr17	39775689	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000311208	ENST00000532303		TCGA	RV	CESC	TCGA-EK-A3GJ-01A	KRT17	chr17	39775689	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000311208	ENST00000529927		TCGA	RV	CESC	TCGA-EK-A3GJ-01A	KRT17	chr17	39775689	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000311208	ENST00000415352		TCGA	RV	CESC	TCGA-EK-A3GJ-01A	KRT17	chr17	39775689	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000311208	ENST00000526169		TCGA	RV	CESC	TCGA-EK-A3GJ-01A	KRT17	chr17	39775689	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000331483	ENST00000270189		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000331483	ENST00000429089		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000331483	ENST00000220809		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000331483	ENST00000352041		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000331483	ENST00000519510		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000331483	ENST00000429710		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000331483	ENST00000524009		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000270189		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000429089		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000220809		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000352041		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000519510		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000429710		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000576390	ENST00000524009		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000270189		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000429089		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000220809		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000352041		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000519510		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000429710		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000439918	ENST00000524009		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000270189		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000429089		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000220809		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000352041		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000519510		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000429710		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
intron-intron	ENST00000472244	ENST00000524009		TCGA	RV	CESC	TCGA-EA-A5FO-01A	P4HB	chr17	79801042	-	PLAT	chr8	42051245	-
Frame-shit	ENST00000354532	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000354532	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000599846	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000599846	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
intron-3CDS	ENST00000596957	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
intron-3CDS	ENST00000596957	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000347545	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000347545	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000378152	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000378152	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000337665	ENST00000598441		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000337665	ENST00000221448		TCGA	RV	CESC	TCGA-UC-A7PG-06A	ARHGEF1	chr19	42399559	+	SNRNP70	chr19	49604647	+
Frame-shit	ENST00000256216	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000256216	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000256216	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000256216	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000256216	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000256216	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000515320	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000515320	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000515320	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000515320	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000515320	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3UTR	ENST00000515320	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000510025	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000510025	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000510025	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000510025	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000510025	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3UTR	ENST00000510025	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000504811	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000504811	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000504811	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000414835	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000414835	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000414835	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000414835	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3CDS	ENST00000414835	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5UTR-3UTR	ENST00000414835	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000513628	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000513628	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000513628	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000513628	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000513628	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3UTR	ENST00000513628	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000509514	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000509514	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000509514	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000509514	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000509514	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3UTR	ENST00000509514	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000522415	ENST00000274456		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000522415	ENST00000513374		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000522415	ENST00000504771		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000522415	ENST00000503646		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3CDS	ENST00000522415	ENST00000504642		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
intron-3UTR	ENST00000522415	ENST00000415806		TCGA	RV	CESC	TCGA-JW-A5VL-01A	HSD17B4	chr5	118792063	+	TNFAIP8	chr5	118728511	+
5CDS-intron	ENST00000601521	ENST00000354185		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RPS5	chr19	58906170	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000598098	ENST00000354185		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RPS5	chr19	58906170	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000598495	ENST00000354185		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RPS5	chr19	58906170	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000196551	ENST00000354185		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RPS5	chr19	58906170	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000596046	ENST00000354185		TCGA	RV	CESC	TCGA-LP-A5U2-01A	RPS5	chr19	58906170	+	DDX21	chr10	70723858	+
In-frame	ENST00000379370	ENST00000394532		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
In-frame	ENST00000379370	ENST00000309032		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000379370	ENST00000544785		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
5CDS-intron	ENST00000379370	ENST00000394531		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
intron-3CDS	ENST00000477585	ENST00000394532		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
intron-3CDS	ENST00000477585	ENST00000309032		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
intron-intron	ENST00000477585	ENST00000544785		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
intron-intron	ENST00000477585	ENST00000394531		TCGA	RV	CESC	TCGA-UC-A7PD-01A	AGRN	chr1	957842	+	BAD	chr11	64039275	-
Frame-shit	ENST00000368874	ENST00000368868		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368874	ENST00000447402		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368874	ENST00000426705		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368874	ENST00000435071		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368874	ENST00000473693		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000368868		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000447402		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000426705		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000271657	ENST00000435071		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000271657	ENST00000473693		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000368868		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000447402		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000426705		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368875	ENST00000435071		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368875	ENST00000473693		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368873	ENST00000368868		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368873	ENST00000447402		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368873	ENST00000426705		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368873	ENST00000435071		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368873	ENST00000473693		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000368868		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000447402		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000426705		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000529142	ENST00000435071		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000529142	ENST00000473693		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368872	ENST00000368868		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368872	ENST00000447402		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368872	ENST00000426705		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368872	ENST00000435071		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368872	ENST00000473693		TCGA	RV	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151342245	-
5CDS-intron	ENST00000258733	ENST00000322231		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000339077		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000539124		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000542558		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000409689		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000545443		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000479288		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000322275		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000410047		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000258733	ENST00000545771		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000322231		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000339077		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000539124		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000542558		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000409689		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000545443		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000479288		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000322275		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000410047		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000381990	ENST00000545771		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000322231		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000339077		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000539124		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000542558		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000409689		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000545443		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000479288		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000322275		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000410047		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000409458	ENST00000545771		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000322231		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000339077		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000539124		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000542558		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000409689		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000545443		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000479288		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000322275		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000410047		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000539136	ENST00000545771		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000322231		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000339077		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000539124		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000542558		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000409689		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000545443		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000479288		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000322275		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000410047		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
5CDS-intron	ENST00000453162	ENST00000545771		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000322231		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000339077		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000539124		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000542558		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000409689		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000545443		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000479288		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000322275		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000410047		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
intron-intron	ENST00000478451	ENST00000545771		TCGA	RV	CESC	TCGA-DS-A7WI-01A	GPNMB	chr7	23293931	+	KLHL7	chr7	23195610	+
In-frame	ENST00000579146	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000579146	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000579146	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000579146	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000579146	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000579146	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000579146	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000579146	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000579146	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000579146	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000300658	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000300658	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000300658	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000300658	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-3CDS	ENST00000378011	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-intron	ENST00000378011	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-intron	ENST00000378011	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
intron-intron	ENST00000378011	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000584601		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000406381		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000541774		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000445658		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000540147		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000584450		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
In-frame	ENST00000429199	ENST00000269571		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000429199	ENST00000578199		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000429199	ENST00000540042		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000429199	ENST00000584888		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PGAP3	chr17	37840850	-	ERBB2	chr17	37880979	+
5CDS-intron	ENST00000336861	ENST00000354185		TCGA	RV	CESC	TCGA-EA-A3QE-01A	KRT13	chr17	39657233	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000246635	ENST00000354185		TCGA	RV	CESC	TCGA-EA-A3QE-01A	KRT13	chr17	39657233	-	DDX21	chr10	70723858	+
intron-intron	ENST00000587544	ENST00000354185		TCGA	RV	CESC	TCGA-EA-A3QE-01A	KRT13	chr17	39657233	-	DDX21	chr10	70723858	+
intron-intron	ENST00000587118	ENST00000354185		TCGA	RV	CESC	TCGA-EA-A3QE-01A	KRT13	chr17	39657233	-	DDX21	chr10	70723858	+
Frame-shit	ENST00000256496	ENST00000302640		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000256496	ENST00000354582		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000256496	ENST00000423119		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
In-frame	ENST00000256496	ENST00000456211		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
In-frame	ENST00000256496	ENST00000357086		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000256496	ENST00000544951		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
In-frame	ENST00000256496	ENST00000443694		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
5CDS-3UTR	ENST00000256496	ENST00000463980		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000419534	ENST00000302640		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000419534	ENST00000354582		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000419534	ENST00000423119		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
In-frame	ENST00000419534	ENST00000456211		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
In-frame	ENST00000419534	ENST00000357086		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000419534	ENST00000544951		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
In-frame	ENST00000419534	ENST00000443694		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
5CDS-3UTR	ENST00000419534	ENST00000463980		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000302640		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000354582		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000423119		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000456211		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000357086		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000544951		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3CDS	ENST00000468010	ENST00000443694		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
intron-3UTR	ENST00000468010	ENST00000463980		TCGA	RV	CESC	TCGA-EA-A50E-01A	ARL8B	chr3	5164273	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000346991	ENST00000356113		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000346991	ENST00000414170		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000346991	ENST00000299022		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000346991	ENST00000433326		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000527044	ENST00000356113		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000527044	ENST00000414170		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000527044	ENST00000299022		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000527044	ENST00000433326		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000399668	ENST00000356113		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000399668	ENST00000414170		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000399668	ENST00000299022		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5UTR-3CDS	ENST00000399668	ENST00000433326		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
intron-3CDS	ENST00000531626	ENST00000356113		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
intron-3CDS	ENST00000531626	ENST00000414170		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
intron-3CDS	ENST00000531626	ENST00000299022		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
intron-3CDS	ENST00000531626	ENST00000433326		TCGA	RV	CESC	TCGA-IR-A3LK-01A	CASC5	chr15	40886590	+	LIPC	chr15	58855704	+
5CDS-intron	ENST00000167586	ENST00000216297		TCGA	RV	CESC	TCGA-FU-A3HY-01A	KRT14	chr17	39738531	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000167586	ENST00000555943		TCGA	RV	CESC	TCGA-FU-A3HY-01A	KRT14	chr17	39738531	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000359337	ENST00000399640		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-intron	ENST00000359337	ENST00000319914		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-5UTR	ENST00000359337	ENST00000521180		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-5UTR	ENST00000359337	ENST00000522652		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-5UTR	ENST00000359337	ENST00000519435		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-intron	ENST00000449103	ENST00000399640		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-intron	ENST00000449103	ENST00000319914		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-5UTR	ENST00000449103	ENST00000521180		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-5UTR	ENST00000449103	ENST00000522652		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5CDS-5UTR	ENST00000449103	ENST00000519435		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
intron-intron	ENST00000496720	ENST00000399640		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
intron-intron	ENST00000496720	ENST00000319914		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
intron-5UTR	ENST00000496720	ENST00000521180		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
intron-5UTR	ENST00000496720	ENST00000522652		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
intron-5UTR	ENST00000496720	ENST00000519435		TCGA	RV	CESC	TCGA-VS-A9V0-01A	PLXNB2	chr22	50718434	-	ST3GAL1	chr8	134511432	-
5UTR-3CDS	ENST00000589222	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000589222	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000589222	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000589222	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-intron	ENST00000589222	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000407086	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000407086	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000407086	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000407086	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-intron	ENST00000407086	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000390652	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000390652	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000390652	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-3CDS	ENST00000390652	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
5UTR-intron	ENST00000390652	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000408905	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000408905	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000408905	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000408905	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-intron	ENST00000408905	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588462	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588462	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588462	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588462	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-intron	ENST00000588462	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585744	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585744	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585744	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585744	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-intron	ENST00000585744	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588874	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588874	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588874	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000588874	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-intron	ENST00000588874	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585812	ENST00000443572		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585812	ENST00000406116		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585812	ENST00000225577		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000585812	ENST00000393021		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-intron	ENST00000585812	ENST00000587061		TCGA	RV	CESC	TCGA-C5-A907-01A	BCAS3	chr17	58755275	+	RPS6KB1	chr17	57990045	+
intron-3CDS	ENST00000405088	ENST00000288607		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
intron-3CDS	ENST00000405088	ENST00000404674		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
intron-3CDS	ENST00000405088	ENST00000252329		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
intron-3CDS	ENST00000471899	ENST00000288607		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
intron-3CDS	ENST00000471899	ENST00000404674		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
intron-3CDS	ENST00000471899	ENST00000252329		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
Frame-shit	ENST00000297508	ENST00000288607		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
Frame-shit	ENST00000297508	ENST00000404674		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
Frame-shit	ENST00000297508	ENST00000252329		TCGA	RV	CESC	TCGA-C5-A1BM-01A	MICALL2	chr7	1498820	-	PSMG3	chr7	1607486	-
In-frame	ENST00000263846	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000263846	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000263846	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000263846	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-intron	ENST00000263846	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
In-frame	ENST00000540677	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000540677	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000540677	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000540677	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-intron	ENST00000540677	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
In-frame	ENST00000539008	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000539008	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000539008	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000539008	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-intron	ENST00000539008	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
In-frame	ENST00000542836	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000542836	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000542836	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000542836	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-intron	ENST00000542836	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
In-frame	ENST00000542670	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000542670	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000542670	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000542670	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-intron	ENST00000542670	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
In-frame	ENST00000535826	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000535826	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000535826	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-3UTR	ENST00000535826	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
5CDS-intron	ENST00000535826	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
intron-3CDS	ENST00000540831	ENST00000301761		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
intron-3CDS	ENST00000540831	ENST00000542074		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
intron-3UTR	ENST00000540831	ENST00000537782		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
intron-3UTR	ENST00000540831	ENST00000543265		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
intron-intron	ENST00000540831	ENST00000534878		TCGA	RV	CESC	TCGA-MY-A5BF-01A	SYT7	chr11	61290547	-	SDHAF2	chr11	61213413	+
Frame-shit	ENST00000252242	ENST00000379802		TCGA	RV	CESC	TCGA-VS-A8EB-01A	KRT5	chr12	52908361	-	DSP	chr6	7575528	+
Frame-shit	ENST00000252242	ENST00000418664		TCGA	RV	CESC	TCGA-VS-A8EB-01A	KRT5	chr12	52908361	-	DSP	chr6	7575528	+
Frame-shit	ENST00000360614	ENST00000423169		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
In-frame	ENST00000360614	ENST00000267868		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000360614	ENST00000557850		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000360614	ENST00000532743		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000360614	ENST00000382643		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
5CDS-3UTR	ENST00000360614	ENST00000530766		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000585374	ENST00000423169		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000585374	ENST00000267868		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000585374	ENST00000557850		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000585374	ENST00000532743		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000585374	ENST00000382643		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
5CDS-3UTR	ENST00000585374	ENST00000530766		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000593119	ENST00000423169		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
In-frame	ENST00000593119	ENST00000267868		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000593119	ENST00000557850		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000593119	ENST00000532743		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000593119	ENST00000382643		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
5CDS-3UTR	ENST00000593119	ENST00000530766		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000540670	ENST00000423169		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
In-frame	ENST00000540670	ENST00000267868		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000540670	ENST00000557850		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000540670	ENST00000532743		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000540670	ENST00000382643		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
5CDS-3UTR	ENST00000540670	ENST00000530766		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000590729	ENST00000423169		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
In-frame	ENST00000590729	ENST00000267868		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000590729	ENST00000557850		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000590729	ENST00000532743		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000590729	ENST00000382643		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
5CDS-3UTR	ENST00000590729	ENST00000530766		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
intron-3CDS	ENST00000590511	ENST00000423169		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
intron-3CDS	ENST00000590511	ENST00000267868		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
intron-3CDS	ENST00000590511	ENST00000557850		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
intron-3CDS	ENST00000590511	ENST00000532743		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
intron-3CDS	ENST00000590511	ENST00000382643		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
intron-3UTR	ENST00000590511	ENST00000530766		TCGA	RV	CESC	TCGA-EA-A50E-01A	LONP1	chr19	5700800	-	RAD51	chr15	41023253	+
Frame-shit	ENST00000368851	ENST00000472647		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
Frame-shit	ENST00000368851	ENST00000367811		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
5CDS-intron	ENST00000368851	ENST00000469474		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
5UTR-3CDS	ENST00000368850	ENST00000472647		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
5UTR-3CDS	ENST00000368850	ENST00000367811		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
5UTR-intron	ENST00000368850	ENST00000469474		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
3UTR-3CDS	ENST00000465319	ENST00000472647		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
3UTR-3CDS	ENST00000465319	ENST00000367811		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
3UTR-intron	ENST00000465319	ENST00000469474		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	SLC16A10	chr6	111498868	+	NME7	chr1	169102055	-
5UTR-3CDS	ENST00000216639	ENST00000216277		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000216639	ENST00000557320		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000216639	ENST00000554130		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000216639	ENST00000557471		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
5UTR-intron	ENST00000216639	ENST00000392990		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
intron-3CDS	ENST00000555067	ENST00000216277		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
intron-intron	ENST00000555067	ENST00000557320		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
intron-intron	ENST00000555067	ENST00000554130		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
intron-intron	ENST00000555067	ENST00000557471		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
intron-intron	ENST00000555067	ENST00000392990		TCGA	RV	CESC	TCGA-VS-A8EC-01A	VRK1	chr14	97263784	+	PAPOLA	chr14	97022184	+
5CDS-intron	ENST00000368738	ENST00000270189		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000368738	ENST00000429089		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000368738	ENST00000220809		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000368738	ENST00000352041		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000368738	ENST00000519510		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000368738	ENST00000429710		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000368738	ENST00000524009		TCGA	RV	CESC	TCGA-VS-A958-01A	S100A9	chr1	153333503	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000270189		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000429089		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000220809		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000352041		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000519510		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000429710		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000053867	ENST00000524009		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000270189		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000429089		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000220809		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000352041		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000519510		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000429710		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589265	ENST00000524009		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000270189		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000429089		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000220809		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000352041		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000519510		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000429710		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589923	ENST00000524009		TCGA	RV	CESC	TCGA-HM-A4S6-01A	GRN	chr17	42430470	+	PLAT	chr8	42051245	-
5UTR-3CDS	ENST00000392011	ENST00000296474		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
5UTR-3CDS	ENST00000392011	ENST00000344206		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
5UTR-3CDS	ENST00000409212	ENST00000296474		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
5UTR-3CDS	ENST00000409212	ENST00000344206		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
5UTR-3CDS	ENST00000344528	ENST00000296474		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
5UTR-3CDS	ENST00000344528	ENST00000344206		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
intron-3CDS	ENST00000489601	ENST00000296474		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
intron-3CDS	ENST00000489601	ENST00000344206		TCGA	RV	CESC	TCGA-DS-A7WH-01A	SH3BP4	chr2	235904020	+	MST1R	chr3	49936696	-
5CDS-intron	ENST00000263918	ENST00000233099		TCGA	RV	CESC	TCGA-HM-A6W2-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37195744	-
5CDS-intron	ENST00000263918	ENST00000354531		TCGA	RV	CESC	TCGA-HM-A6W2-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37195744	-
5CDS-intron	ENST00000379213	ENST00000233099		TCGA	RV	CESC	TCGA-HM-A6W2-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37195744	-
5CDS-intron	ENST00000379213	ENST00000354531		TCGA	RV	CESC	TCGA-HM-A6W2-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37195744	-
In-frame	ENST00000522566	ENST00000309982		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000522566	ENST00000438105		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000522566	ENST00000297574		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000522566	ENST00000330955		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000522566	ENST00000306391		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-3UTR	ENST00000522566	ENST00000523754		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
In-frame	ENST00000358755	ENST00000309982		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000358755	ENST00000438105		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000358755	ENST00000297574		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000358755	ENST00000330955		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000358755	ENST00000306391		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-3UTR	ENST00000358755	ENST00000523754		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
In-frame	ENST00000523739	ENST00000309982		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000523739	ENST00000438105		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000523739	ENST00000297574		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000523739	ENST00000330955		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000523739	ENST00000306391		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-3UTR	ENST00000523739	ENST00000523754		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000540287	ENST00000309982		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000540287	ENST00000438105		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
Frame-shit	ENST00000540287	ENST00000297574		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000540287	ENST00000330955		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-intron	ENST00000540287	ENST00000306391		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-3UTR	ENST00000540287	ENST00000523754		TCGA	RV	CESC	TCGA-DS-A3LQ-01A	FZD6	chr8	104312512	+	BAALC	chr8	104240217	+
5CDS-3UTR	ENST00000336861	ENST00000355327		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000336861	ENST00000261862		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000336861	ENST00000357769		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000336861	ENST00000567838		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000246635	ENST00000355327		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000246635	ENST00000261862		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000246635	ENST00000357769		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000246635	ENST00000567838		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000587544	ENST00000355327		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000587544	ENST00000261862		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-intron	ENST00000587544	ENST00000357769		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-intron	ENST00000587544	ENST00000567838		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000587118	ENST00000355327		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000587118	ENST00000261862		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-intron	ENST00000587118	ENST00000357769		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
intron-intron	ENST00000587118	ENST00000567838		TCGA	RV	CESC	TCGA-EK-A2RC-01A	KRT13	chr17	39657233	-	THSD4	chr15	72072881	+
In-frame	ENST00000530675	ENST00000361236		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
In-frame	ENST00000530675	ENST00000398136		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000530675	ENST00000532161		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000530675	ENST00000525577		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
In-frame	ENST00000227758	ENST00000361236		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
In-frame	ENST00000227758	ENST00000398136		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000227758	ENST00000532161		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000227758	ENST00000525577		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
In-frame	ENST00000532672	ENST00000361236		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
In-frame	ENST00000532672	ENST00000398136		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000532672	ENST00000532161		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000532672	ENST00000525577		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
3UTR-3CDS	ENST00000527910	ENST00000361236		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
3UTR-3CDS	ENST00000527910	ENST00000398136		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
3UTR-5UTR	ENST00000527910	ENST00000532161		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
3UTR-5UTR	ENST00000527910	ENST00000525577		TCGA	RV	CESC	TCGA-DS-A0VL-01A	BIRC2	chr11	102239279	+	TMEM123	chr11	102272937	-
intron-3CDS	ENST00000503238	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000358350	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000537810	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000264319	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000507711	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000514783	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000514783	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000514783	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-3CDS	ENST00000507873	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-3CDS	ENST00000506685	ENST00000508632		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	RV	CESC	TCGA-HM-A6W2-06A	FRYL	chr4	48782095	-	OCIAD2	chr4	48887582	-
In-frame	ENST00000304718	ENST00000377122		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
In-frame	ENST00000304718	ENST00000417816		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
In-frame	ENST00000304718	ENST00000377159		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
5CDS-intron	ENST00000304718	ENST00000377119		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
5CDS-intron	ENST00000304718	ENST00000464278		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
Frame-shit	ENST00000485685	ENST00000377122		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
Frame-shit	ENST00000485685	ENST00000417816		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
Frame-shit	ENST00000485685	ENST00000377159		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
5CDS-intron	ENST00000485685	ENST00000377119		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
5CDS-intron	ENST00000485685	ENST00000464278		TCGA	RV	CESC	TCGA-C5-A3HD-01B	GGNBP2	chr17	34901666	+	NEBL	chr10	21101869	-
5CDS-intron	ENST00000304636	ENST00000257497		TCGA	RV	CESC	TCGA-EK-A2RO-01A	COL3A1	chr2	189877472	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000304636	ENST00000376911		TCGA	RV	CESC	TCGA-EK-A2RO-01A	COL3A1	chr2	189877472	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000304636	ENST00000491192		TCGA	RV	CESC	TCGA-EK-A2RO-01A	COL3A1	chr2	189877472	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000317840	ENST00000257497		TCGA	RV	CESC	TCGA-EK-A2RO-01A	COL3A1	chr2	189877472	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000317840	ENST00000376911		TCGA	RV	CESC	TCGA-EK-A2RO-01A	COL3A1	chr2	189877472	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000317840	ENST00000491192		TCGA	RV	CESC	TCGA-EK-A2RO-01A	COL3A1	chr2	189877472	+	ANXA1	chr9	75772570	+
In-frame	ENST00000297071	ENST00000434909		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
In-frame	ENST00000297071	ENST00000509504		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
In-frame	ENST00000297071	ENST00000311813		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5CDS-3UTR	ENST00000297071	ENST00000482461		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5CDS-3UTR	ENST00000297071	ENST00000441328		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5CDS-3UTR	ENST00000297071	ENST00000409899		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5CDS-3UTR	ENST00000297071	ENST00000409611		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000392502	ENST00000434909		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000392502	ENST00000509504		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000392502	ENST00000311813		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000392502	ENST00000482461		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000392502	ENST00000441328		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000392502	ENST00000409899		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000392502	ENST00000409611		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000538367	ENST00000434909		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000538367	ENST00000509504		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000538367	ENST00000311813		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000538367	ENST00000482461		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000538367	ENST00000441328		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000538367	ENST00000409899		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000538367	ENST00000409611		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3CDS	ENST00000474586	ENST00000434909		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3CDS	ENST00000474586	ENST00000509504		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3CDS	ENST00000474586	ENST00000311813		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3UTR	ENST00000474586	ENST00000482461		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3UTR	ENST00000474586	ENST00000441328		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3UTR	ENST00000474586	ENST00000409899		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
intron-3UTR	ENST00000474586	ENST00000409611		TCGA	RV	CESC	TCGA-EK-A2PM-01A	TRA2A	chr7	23571408	-	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000340513	ENST00000376075		TCGA	RV	CESC	TCGA-LP-A7HU-01A	TPX2	chr20	30327424	+	COX4I2	chr20	30232571	+
5UTR-3UTR	ENST00000340513	ENST00000490030		TCGA	RV	CESC	TCGA-LP-A7HU-01A	TPX2	chr20	30327424	+	COX4I2	chr20	30232571	+
5UTR-3CDS	ENST00000300403	ENST00000376075		TCGA	RV	CESC	TCGA-LP-A7HU-01A	TPX2	chr20	30327424	+	COX4I2	chr20	30232571	+
5UTR-3UTR	ENST00000300403	ENST00000490030		TCGA	RV	CESC	TCGA-LP-A7HU-01A	TPX2	chr20	30327424	+	COX4I2	chr20	30232571	+
5CDS-5UTR	ENST00000309156	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000309156	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309156	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000309156	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000309185	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000309185	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000309185	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000394211	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394211	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000394211	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-intron	ENST00000578702	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-5UTR	ENST00000578702	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
3UTR-intron	ENST00000578702	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000445327	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000445327	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000445327	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000394209	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394209	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000394209	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000584601		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000406381		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000541774		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000394204	ENST00000445658		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000540147		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000584450		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000269571		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000578199		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-5UTR	ENST00000394204	ENST00000540042		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000394204	ENST00000584888		TCGA	RV	CESC	TCGA-LP-A5U3-01A	GRB7	chr17	37898709	+	ERBB2	chr17	37863243	+
5CDS-intron	ENST00000313949	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000313949	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000313949	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371098	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371098	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371098	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371075	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371075	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371075	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371100	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371100	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371100	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371099	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371099	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371099	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371102	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371102	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371102	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000464624	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000464624	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000464624	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000306120	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000306120	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000306120	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371095	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371095	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371095	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371085	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371085	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000371085	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000354359	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000354359	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000354359	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000265620	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000265620	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000265620	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000306090	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000306090	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000306090	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371081	ENST00000261531		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371081	ENST00000554775		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
intron-intron	ENST00000371081	ENST00000555761		TCGA	RV	CESC	TCGA-JX-A3PZ-01A	GNAS	chr20	57486241	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000442011	ENST00000257497		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000442011	ENST00000376911		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000442011	ENST00000491192		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000305126	ENST00000257497		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000305126	ENST00000376911		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000305126	ENST00000491192		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000508076	ENST00000257497		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000508076	ENST00000376911		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000508076	ENST00000491192		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000504185	ENST00000257497		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000504185	ENST00000376911		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000504185	ENST00000491192		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	TGFBI	chr5	135399504	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000336861	ENST00000300134		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336861	ENST00000538913		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336861	ENST00000543873		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336861	ENST00000556155		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336861	ENST00000537215		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336861	ENST00000454075		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000246635	ENST00000300134		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000246635	ENST00000538913		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000246635	ENST00000543873		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000246635	ENST00000556155		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000246635	ENST00000537215		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000246635	ENST00000454075		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587544	ENST00000300134		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587544	ENST00000538913		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587544	ENST00000543873		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587544	ENST00000556155		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587544	ENST00000537215		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587544	ENST00000454075		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587118	ENST00000300134		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587118	ENST00000538913		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587118	ENST00000543873		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587118	ENST00000556155		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587118	ENST00000537215		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
intron-intron	ENST00000587118	ENST00000454075		TCGA	RV	CESC	TCGA-FU-A5XV-01A	KRT13	chr17	39657233	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000265062	ENST00000257497		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000265062	ENST00000376911		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000265062	ENST00000491192		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000482525	ENST00000257497		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000482525	ENST00000376911		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000482525	ENST00000491192		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000485280	ENST00000257497		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000485280	ENST00000376911		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000485280	ENST00000491192		TCGA	RV	CESC	TCGA-EK-A2RO-01A	RAB7A	chr3	128533639	+	ANXA1	chr9	75772570	+
In-frame	ENST00000435817	ENST00000293373		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
Frame-shit	ENST00000435817	ENST00000545638		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
5CDS-intron	ENST00000435817	ENST00000552211		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
intron-3CDS	ENST00000523856	ENST00000293373		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
intron-3CDS	ENST00000523856	ENST00000545638		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
intron-intron	ENST00000523856	ENST00000552211		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
5UTR-3CDS	ENST00000522126	ENST00000293373		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
5UTR-3CDS	ENST00000522126	ENST00000545638		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
5UTR-intron	ENST00000522126	ENST00000552211		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
In-frame	ENST00000522783	ENST00000293373		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
Frame-shit	ENST00000522783	ENST00000545638		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
5CDS-intron	ENST00000522783	ENST00000552211		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
In-frame	ENST00000519800	ENST00000293373		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
Frame-shit	ENST00000519800	ENST00000545638		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
5CDS-intron	ENST00000519800	ENST00000552211		TCGA	RV	CESC	TCGA-VS-A9U7-01A	FCHSD1	chr5	141029926	-	NCKAP1L	chr12	54936359	+
intron-3CDS	ENST00000263377	ENST00000353151		TCGA	RV	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	CSN2	chr4	70826725	-
intron-3CDS	ENST00000371835	ENST00000353151		TCGA	RV	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	CSN2	chr4	70826725	-
5UTR-3CDS	ENST00000360016	ENST00000353151		TCGA	RV	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	CSN2	chr4	70826725	-
intron-3CDS	ENST00000602230	ENST00000353151		TCGA	RV	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	CSN2	chr4	70826725	-
5UTR-3CDS	ENST00000361654	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000361654	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000361654	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000361654	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000545889	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000545889	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000545889	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000545889	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000302528	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000302528	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000302528	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000302528	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000358808	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000358808	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000358808	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000358808	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000537178	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000537178	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000537178	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5UTR-3CDS	ENST00000537178	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540338	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540338	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540338	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540338	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000536634	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000536634	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000536634	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000536634	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540539	ENST00000536306		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540539	ENST00000543897		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540539	ENST00000336229		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
intron-3CDS	ENST00000540539	ENST00000538116		TCGA	RV	CESC	TCGA-ZJ-AAXN-01A	CLIP1	chr12	122907068	-	ZCCHC8	chr12	122958822	-
5CDS-intron	ENST00000248553	ENST00000360325		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000248553	ENST00000538261		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000248553	ENST00000397317		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000248553	ENST00000571881		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000248553	ENST00000573745		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000429938	ENST00000360325		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000429938	ENST00000538261		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000429938	ENST00000397317		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000429938	ENST00000571881		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000429938	ENST00000573745		TCGA	RV	CESC	TCGA-DS-A1OB-01A	HSPB1	chr7	75933609	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000228928	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000228928	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000228928	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000551007	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000551007	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000551007	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548514	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548514	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548514	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000546638	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000546638	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000546638	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LL-01A	OAS3	chr12	113411054	+	ANXA1	chr9	75772570	+
3UTR-intron	ENST00000331595	ENST00000257497		TCGA	RV	CESC	TCGA-MA-AA43-01A	BGN	chrX	152775004	+	ANXA1	chr9	75772570	+
3UTR-intron	ENST00000331595	ENST00000376911		TCGA	RV	CESC	TCGA-MA-AA43-01A	BGN	chrX	152775004	+	ANXA1	chr9	75772570	+
3UTR-intron	ENST00000331595	ENST00000491192		TCGA	RV	CESC	TCGA-MA-AA43-01A	BGN	chrX	152775004	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000480756	ENST00000257497		TCGA	RV	CESC	TCGA-MA-AA43-01A	BGN	chrX	152775004	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000480756	ENST00000376911		TCGA	RV	CESC	TCGA-MA-AA43-01A	BGN	chrX	152775004	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000480756	ENST00000491192		TCGA	RV	CESC	TCGA-MA-AA43-01A	BGN	chrX	152775004	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000419304	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000419304	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000419304	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000419572	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000419572	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000419572	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000401412	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000401412	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000401412	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000486219	ENST00000257497		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000486219	ENST00000376911		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000486219	ENST00000491192		TCGA	RV	CESC	TCGA-IR-A3LB-01A	AGR2	chr7	16832266	-	ANXA1	chr9	75772570	+
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	CESC	TCGA-ZJ-AAX8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-intron	ENST00000248553	ENST00000484427		TCGA	RV	CESC	TCGA-EK-A2RC-01A	HSPB1	chr7	75933612	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000248553	ENST00000371764		TCGA	RV	CESC	TCGA-EK-A2RC-01A	HSPB1	chr7	75933612	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000429938	ENST00000484427		TCGA	RV	CESC	TCGA-EK-A2RC-01A	HSPB1	chr7	75933612	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000429938	ENST00000371764		TCGA	RV	CESC	TCGA-EK-A2RC-01A	HSPB1	chr7	75933612	+	DDX27	chr20	47849303	+
In-frame	ENST00000397732	ENST00000456935		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
In-frame	ENST00000397732	ENST00000221363		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
5CDS-intron	ENST00000397732	ENST00000495617		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
intron-3CDS	ENST00000428311	ENST00000456935		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
intron-3CDS	ENST00000428311	ENST00000221363		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
intron-intron	ENST00000428311	ENST00000495617		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
intron-3CDS	ENST00000493776	ENST00000456935		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
intron-3CDS	ENST00000493776	ENST00000221363		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
intron-intron	ENST00000493776	ENST00000495617		TCGA	RV	CESC	TCGA-IR-A3LI-01A	ZNF709	chr19	12595469	-	MAN2B1	chr19	12758412	-
Frame-shit	ENST00000316485	ENST00000375735		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
5CDS-intron	ENST00000316485	ENST00000334267		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
5CDS-intron	ENST00000316485	ENST00000398093		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
Frame-shit	ENST00000371158	ENST00000375735		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
5CDS-intron	ENST00000371158	ENST00000334267		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
5CDS-intron	ENST00000371158	ENST00000398093		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
Frame-shit	ENST00000543708	ENST00000375735		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
5CDS-intron	ENST00000543708	ENST00000334267		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
5CDS-intron	ENST00000543708	ENST00000398093		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
intron-3CDS	ENST00000545929	ENST00000375735		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
intron-intron	ENST00000545929	ENST00000334267		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
intron-intron	ENST00000545929	ENST00000398093		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
intron-3CDS	ENST00000472512	ENST00000375735		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
intron-intron	ENST00000472512	ENST00000334267		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
intron-intron	ENST00000472512	ENST00000398093		TCGA	RV	CESC	TCGA-Q1-A6DT-01A	INADL	chr1	62483619	+	DYNC2H1	chr11	103151077	+
In-frame	ENST00000261721	ENST00000529202		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000261721	ENST00000263182		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000261721	ENST00000528583		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000261721	ENST00000525090		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5CDS-intron	ENST00000261721	ENST00000527505		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000379403	ENST00000529202		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000379403	ENST00000263182		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000379403	ENST00000528583		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
In-frame	ENST00000379403	ENST00000525090		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5CDS-intron	ENST00000379403	ENST00000527505		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5UTR-3CDS	ENST00000560015	ENST00000529202		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5UTR-3CDS	ENST00000560015	ENST00000263182		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5UTR-3CDS	ENST00000560015	ENST00000528583		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5UTR-3CDS	ENST00000560015	ENST00000525090		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
5UTR-intron	ENST00000560015	ENST00000527505		TCGA	RV	CESC	TCGA-VS-A9UO-01A	BTBD1	chr15	83710480	-	BBOX1	chr11	27114715	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	CESC	TCGA-VS-A9UD-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000535206	ENST00000472232		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000467389		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000379704		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
Frame-shit	ENST00000379731	ENST00000472232		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000467389		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000379704		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-3CDS	ENST00000541851	ENST00000472232		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000467389		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000379704		TCGA	RV	CESC	TCGA-EA-A1QS-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-5UTR	ENST00000584601	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000406381	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000541774	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000445658	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
5UTR-5UTR	ENST00000540147	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000584450	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000269571	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000578199	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000540042	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000584888	ENST00000302584		TCGA	RV	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37856564	+	NEUROD2	chr17	37762857	-
In-frame	ENST00000395146	ENST00000427191		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
In-frame	ENST00000395146	ENST00000436978		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000502971		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000411767		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000316707		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000395146	ENST00000511467		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
In-frame	ENST00000307808	ENST00000427191		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
In-frame	ENST00000307808	ENST00000436978		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000502971		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000411767		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000316707		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000307808	ENST00000511467		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
In-frame	ENST00000544085	ENST00000427191		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
In-frame	ENST00000544085	ENST00000436978		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000544085	ENST00000502971		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000544085	ENST00000411767		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000544085	ENST00000316707		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
5CDS-intron	ENST00000544085	ENST00000511467		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000511996	ENST00000427191		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
intron-3CDS	ENST00000511996	ENST00000436978		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000502971		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000411767		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000316707		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
intron-intron	ENST00000511996	ENST00000511467		TCGA	RV	CESC	TCGA-EA-A5ZD-01A	AFF1	chr4	88048855	+	PTPN13	chr4	87718027	+
In-frame	ENST00000379802	ENST00000330430		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000379802	ENST00000371374		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000379802	ENST00000306764		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000379802	ENST00000405162		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000418664	ENST00000330430		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000418664	ENST00000371374		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000418664	ENST00000306764		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
In-frame	ENST00000418664	ENST00000405162		TCGA	RV	CESC	TCGA-DG-A2KL-01A	DSP	chr6	7572301	+	RCAN2	chr6	46216633	-
Frame-shit	ENST00000359282	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000359282	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000359282	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000603815	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000603815	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000603815	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000437231	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000437231	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000437231	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000447282	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000447282	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000447282	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000549863	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000549863	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000549863	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000359462	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000359462	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000359462	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000546463	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000546463	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000546463	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000552296	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000552296	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000552296	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000552819	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000552819	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000552819	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000455667	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000455667	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000455667	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000439930	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000439930	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000439930	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000548933	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000548933	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
5CDS-intron	ENST00000548933	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
intron-3CDS	ENST00000541275	ENST00000257863		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
intron-3CDS	ENST00000541275	ENST00000550311		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
intron-intron	ENST00000541275	ENST00000379791		TCGA	RV	CESC	TCGA-C5-A1MQ-01A	PCBP2	chr12	53862616	+	AMHR2	chr12	53823930	+
Frame-shit	ENST00000421967	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000426689	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000452211	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000450160	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000426723	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000444069	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000415644	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000415053	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000442597	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
In-frame	ENST00000447314	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000451657	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000435684	ENST00000434006		TCGA	RV	CESC	TCGA-C5-A1M6-01A	NME6	chr3	48338217	-	SPINK8	chr3	48351436	-
In-frame	ENST00000586228	ENST00000352456		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000586228	ENST00000595018		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000586228	ENST00000392006		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000586228	ENST00000378215		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000586228	ENST00000602130		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000586228	ENST00000593587		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000586228	ENST00000263367		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
5CDS-intron	ENST00000586228	ENST00000594207		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000352456		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000595018		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000392006		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000378215		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000602130		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000593587		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
In-frame	ENST00000313040	ENST00000263367		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
5CDS-intron	ENST00000313040	ENST00000594207		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000352456		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000595018		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000392006		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000378215		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000602130		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000593587		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589707	ENST00000263367		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-intron	ENST00000589707	ENST00000594207		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000352456		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000595018		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000392006		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000378215		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000602130		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000593587		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589005	ENST00000263367		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-intron	ENST00000589005	ENST00000594207		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000352456		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000595018		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000392006		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000378215		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000602130		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000593587		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000391961	ENST00000263367		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-intron	ENST00000391961	ENST00000594207		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000352456		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000595018		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000392006		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000378215		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000602130		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000593587		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-3CDS	ENST00000589237	ENST00000263367		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-intron	ENST00000589237	ENST00000594207		TCGA	RV	CESC	TCGA-JW-A5VI-01A	ZNF227	chr19	44722005	+	HNRNPUL1	chr19	41798150	+
intron-intron	ENST00000368708	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368708	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368708	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368708	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368708	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000487430	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000487430	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000487430	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000487430	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000487430	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000497140	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000497140	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000497140	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000497140	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000497140	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368710	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368710	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368710	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368710	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368710	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368709	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368709	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368709	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368709	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368709	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368707	ENST00000322776		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368707	ENST00000532303		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368707	ENST00000529927		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368707	ENST00000415352		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368707	ENST00000526169		TCGA	RV	CESC	TCGA-C5-A1M8-01A	S100A2	chr1	153533819	-	NDUFV1	chr11	67375697	+
In-frame	ENST00000253925	ENST00000355303		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000253925	ENST00000398543		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000253925	ENST00000538023		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000253925	ENST00000316296		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000253925	ENST00000530676		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000253925	ENST00000531349		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
5CDS-intron	ENST00000253925	ENST00000525494		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000389547	ENST00000355303		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000389547	ENST00000398543		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000389547	ENST00000538023		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000389547	ENST00000316296		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000389547	ENST00000530676		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
In-frame	ENST00000389547	ENST00000531349		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
5CDS-intron	ENST00000389547	ENST00000525494		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-3CDS	ENST00000530548	ENST00000355303		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-3CDS	ENST00000530548	ENST00000398543		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-3CDS	ENST00000530548	ENST00000538023		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-3CDS	ENST00000530548	ENST00000316296		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-3CDS	ENST00000530548	ENST00000530676		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-3CDS	ENST00000530548	ENST00000531349		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
intron-intron	ENST00000530548	ENST00000525494		TCGA	RV	CESC	TCGA-IR-A3LA-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	69962564	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	CESC	TCGA-WL-A834-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	CESC	TCGA-ZJ-AAXT-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000066544	ENST00000319977		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000066544	ENST00000585683		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000066544	ENST00000245382		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000531206	ENST00000319977		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000531206	ENST00000585683		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000531206	ENST00000245382		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
Frame-shit	ENST00000446365	ENST00000319977		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
Frame-shit	ENST00000446365	ENST00000585683		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
Frame-shit	ENST00000446365	ENST00000245382		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000527547	ENST00000319977		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000527547	ENST00000585683		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
In-frame	ENST00000527547	ENST00000245382		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
intron-3CDS	ENST00000528748	ENST00000319977		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
intron-3CDS	ENST00000528748	ENST00000585683		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
intron-3CDS	ENST00000528748	ENST00000245382		TCGA	LD	CESC	TCGA-4J-AA1J-01A	CDC27	chr17	45219219	-	C17orf53	chr17	42231924	+
intron-3CDS	ENST00000584601	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584601	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584601	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584601	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584601	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000406381	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000406381	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000406381	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000406381	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000406381	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000541774	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000541774	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000541774	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000541774	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000541774	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
5UTR-3CDS	ENST00000540147	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
5UTR-3CDS	ENST00000540147	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
5UTR-3CDS	ENST00000540147	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
5UTR-3CDS	ENST00000540147	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
5UTR-3CDS	ENST00000540147	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000578199	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000578199	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000578199	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000578199	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000578199	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000540042	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000540042	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000540042	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000540042	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000540042	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	LD	CESC	TCGA-4J-AA1J-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000453594	ENST00000443584		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000453594	ENST00000449996		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
intron-3CDS	ENST00000453594	ENST00000262406		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
intron-intron	ENST00000453594	ENST00000577186		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
Frame-shit	ENST00000409446	ENST00000443584		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
Frame-shit	ENST00000409446	ENST00000449996		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
Frame-shit	ENST00000409446	ENST00000262406		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
5CDS-intron	ENST00000409446	ENST00000577186		TCGA	LD	CESC	TCGA-4J-AA1J-01A	PTGES3L	chr17	41131187	-	RGS9	chr17	63206606	+
In-frame	ENST00000355078	ENST00000255194		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000355078	ENST00000519295		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
5CDS-intron	ENST00000355078	ENST00000523204		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000302763	ENST00000255194		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000302763	ENST00000519295		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
5CDS-intron	ENST00000302763	ENST00000523204		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000518825	ENST00000255194		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000518825	ENST00000519295		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
5CDS-intron	ENST00000518825	ENST00000523204		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
3UTR-3CDS	ENST00000520400	ENST00000255194		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
3UTR-3CDS	ENST00000520400	ENST00000519295		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
3UTR-intron	ENST00000520400	ENST00000523204		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000540387	ENST00000255194		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
In-frame	ENST00000540387	ENST00000519295		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
5CDS-intron	ENST00000540387	ENST00000523204		TCGA	LD	CESC	TCGA-BI-A0VR-01A	CTNNA1	chr5	138223331	+	AP3B1	chr5	77477486	-
5CDS-5UTR	ENST00000398022	ENST00000246229		TCGA	LD	CESC	TCGA-BI-A0VS-01A	TM9SF4	chr20	30749168	+	PLAGL2	chr20	30790095	-
5CDS-5UTR	ENST00000217315	ENST00000246229		TCGA	LD	CESC	TCGA-BI-A0VS-01A	TM9SF4	chr20	30749168	+	PLAGL2	chr20	30790095	-
Frame-shit	ENST00000341776	ENST00000297153		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
Frame-shit	ENST00000341776	ENST00000434837		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
Frame-shit	ENST00000341776	ENST00000505425		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000341776	ENST00000510077		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000397311	ENST00000297153		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000397311	ENST00000434837		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000397311	ENST00000505425		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-intron	ENST00000397311	ENST00000510077		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000541660	ENST00000297153		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000541660	ENST00000434837		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000541660	ENST00000505425		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-intron	ENST00000541660	ENST00000510077		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000474854	ENST00000297153		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000474854	ENST00000434837		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000474854	ENST00000505425		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
intron-intron	ENST00000474854	ENST00000510077		TCGA	LD	CESC	TCGA-C5-A1BJ-01A	JARID2	chr6	15246815	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000383202	ENST00000484501		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000383202	ENST00000329582		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000383202	ENST00000309741		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000236698	ENST00000484501		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000236698	ENST00000329582		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000236698	ENST00000309741		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
intron-intron	ENST00000434713	ENST00000484501		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
intron-intron	ENST00000434713	ENST00000329582		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
intron-3UTR	ENST00000434713	ENST00000309741		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
intron-intron	ENST00000480733	ENST00000484501		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
intron-intron	ENST00000480733	ENST00000329582		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
intron-3UTR	ENST00000480733	ENST00000309741		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000536929	ENST00000484501		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000536929	ENST00000329582		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000536929	ENST00000309741		TCGA	LD	CESC	TCGA-C5-A1BL-01A	STAG1	chr3	136082208	-	IL20RB	chr3	136728955	+
5UTR-3CDS	ENST00000341807	ENST00000520356		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-3CDS	ENST00000341807	ENST00000520727		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-3CDS	ENST00000341807	ENST00000429442		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-3CDS	ENST00000341807	ENST00000377838		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-3CDS	ENST00000341807	ENST00000520214		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-3CDS	ENST00000341807	ENST00000523399		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-intron	ENST00000341807	ENST00000517307		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000303045	ENST00000520356		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000303045	ENST00000520727		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000303045	ENST00000429442		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000303045	ENST00000377838		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000303045	ENST00000520214		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000303045	ENST00000523399		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5CDS-intron	ENST00000303045	ENST00000517307		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000435777	ENST00000520356		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000435777	ENST00000520727		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000435777	ENST00000429442		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000435777	ENST00000377838		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000435777	ENST00000520214		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
Frame-shit	ENST00000435777	ENST00000523399		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5CDS-intron	ENST00000435777	ENST00000517307		TCGA	LD	CESC	TCGA-C5-A1M5-01A	COL22A1	chr8	139603667	-	ZFAT	chr8	135649955	-
5UTR-3CDS	ENST00000591790	ENST00000586855		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
5UTR-3CDS	ENST00000591790	ENST00000358992		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
5UTR-3CDS	ENST00000504904	ENST00000586855		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
5UTR-3CDS	ENST00000504904	ENST00000358992		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
intron-3CDS	ENST00000292069	ENST00000586855		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
intron-3CDS	ENST00000292069	ENST00000358992		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
intron-3CDS	ENST00000342634	ENST00000586855		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
intron-3CDS	ENST00000342634	ENST00000358992		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
5UTR-3CDS	ENST00000589652	ENST00000586855		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
5UTR-3CDS	ENST00000589652	ENST00000358992		TCGA	LD	CESC	TCGA-C5-A1M5-01A	ZNF667	chr19	56983068	-	ZSCAN5B	chr19	56703422	-
Frame-shit	ENST00000262971	ENST00000262962		TCGA	LD	CESC	TCGA-C5-A1M7-01A	PIAS4	chr19	4013347	+	CCDC94	chr19	4267621	+
intron-3CDS	ENST00000596144	ENST00000262962		TCGA	LD	CESC	TCGA-C5-A1M7-01A	PIAS4	chr19	4013347	+	CCDC94	chr19	4267621	+
5UTR-3CDS	ENST00000479650	ENST00000298585		TCGA	LD	CESC	TCGA-C5-A1MJ-01A	DPH7	chr9	140468660	-	ZMYND19	chr9	140481559	-
5UTR-5UTR	ENST00000479650	ENST00000471957		TCGA	LD	CESC	TCGA-C5-A1MJ-01A	DPH7	chr9	140468660	-	ZMYND19	chr9	140481559	-
Frame-shit	ENST00000277540	ENST00000298585		TCGA	LD	CESC	TCGA-C5-A1MJ-01A	DPH7	chr9	140468660	-	ZMYND19	chr9	140481559	-
5CDS-5UTR	ENST00000277540	ENST00000471957		TCGA	LD	CESC	TCGA-C5-A1MJ-01A	DPH7	chr9	140468660	-	ZMYND19	chr9	140481559	-
5CDS-5UTR	ENST00000375687	ENST00000170150		TCGA	LD	CESC	TCGA-C5-A1MK-01A	ASXL1	chr20	30946635	+	BPIFB2	chr20	31596347	+
5CDS-5UTR	ENST00000542461	ENST00000170150		TCGA	LD	CESC	TCGA-C5-A1MK-01A	ASXL1	chr20	30946635	+	BPIFB2	chr20	31596347	+
intron-5UTR	ENST00000375689	ENST00000170150		TCGA	LD	CESC	TCGA-C5-A1MK-01A	ASXL1	chr20	30946635	+	BPIFB2	chr20	31596347	+
intron-5UTR	ENST00000306058	ENST00000170150		TCGA	LD	CESC	TCGA-C5-A1MK-01A	ASXL1	chr20	30946635	+	BPIFB2	chr20	31596347	+
intron-5UTR	ENST00000470145	ENST00000170150		TCGA	LD	CESC	TCGA-C5-A1MK-01A	ASXL1	chr20	30946635	+	BPIFB2	chr20	31596347	+
5UTR-3CDS	ENST00000202028	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-3CDS	ENST00000202028	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-intron	ENST00000202028	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-3CDS	ENST00000373950	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-3CDS	ENST00000373950	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-intron	ENST00000373950	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-3CDS	ENST00000441639	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-3CDS	ENST00000441639	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5UTR-intron	ENST00000441639	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000373946	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000373946	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-intron	ENST00000373946	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000338074	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000338074	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-intron	ENST00000338074	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000373941	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000373941	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-intron	ENST00000373941	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000479336	ENST00000373030		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-3CDS	ENST00000479336	ENST00000373039		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
intron-intron	ENST00000479336	ENST00000471199		TCGA	LD	CESC	TCGA-C5-A1MK-01A	EPB41L1	chr20	34700402	+	IFT52	chr20	42264566	+
5CDS-5UTR	ENST00000437809	ENST00000336429		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000437809	ENST00000398019		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000437809	ENST00000540675		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000437809	ENST00000546027		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000368331	ENST00000336429		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000368331	ENST00000398019		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000368331	ENST00000540675		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000368331	ENST00000546027		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000271883	ENST00000336429		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000271883	ENST00000398019		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000271883	ENST00000540675		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000271883	ENST00000546027		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000361040	ENST00000336429		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000361040	ENST00000398019		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000361040	ENST00000540675		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5CDS-5UTR	ENST00000361040	ENST00000546027		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5UTR-5UTR	ENST00000471341	ENST00000336429		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5UTR-5UTR	ENST00000471341	ENST00000398019		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5UTR-5UTR	ENST00000471341	ENST00000540675		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
5UTR-5UTR	ENST00000471341	ENST00000546027		TCGA	LD	CESC	TCGA-C5-A1MK-01A	GON4L	chr1	155783425	-	SERPINB7	chr18	61449589	+
3UTR-3CDS	ENST00000539805	ENST00000407721		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
3UTR-3CDS	ENST00000539805	ENST00000355527		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
5UTR-3CDS	ENST00000480436	ENST00000407721		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
5UTR-3CDS	ENST00000480436	ENST00000355527		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
Frame-shit	ENST00000337743	ENST00000407721		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
Frame-shit	ENST00000337743	ENST00000355527		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
intron-3CDS	ENST00000544472	ENST00000407721		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
intron-3CDS	ENST00000544472	ENST00000355527		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TASP1	chr20	13415691	-	DHCR7	chr11	71152486	-
intron-3CDS	ENST00000468874	ENST00000310380		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000468874	ENST00000437101		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000468874	ENST00000429994		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000468874	ENST00000355729		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000468874	ENST00000460582		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000468874	ENST00000356740		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
5UTR-3CDS	ENST00000542230	ENST00000310380		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
5UTR-3CDS	ENST00000542230	ENST00000437101		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
5UTR-3CDS	ENST00000542230	ENST00000429994		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
5UTR-3CDS	ENST00000542230	ENST00000355729		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
5UTR-5UTR	ENST00000542230	ENST00000460582		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
5UTR-5UTR	ENST00000542230	ENST00000356740		TCGA	LD	CESC	TCGA-C5-A1MK-01A	TMEM50B	chr21	34852145	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000454872	ENST00000330394		TCGA	LD	CESC	TCGA-C5-A1ML-01A	NAALADL2	chr3	175042114	+	EPHB3	chr3	184299041	+
3UTR-3CDS	ENST00000473253	ENST00000330394		TCGA	LD	CESC	TCGA-C5-A1ML-01A	NAALADL2	chr3	175042114	+	EPHB3	chr3	184299041	+
intron-5UTR	ENST00000374189	ENST00000451320		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374189	ENST00000429148		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374189	ENST00000353617		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374189	ENST00000405727		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374189	ENST00000356064		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000374189	ENST00000511289		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000451320		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000429148		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000353617		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000405727		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374182	ENST00000356064		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000374182	ENST00000511289		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000451320		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000429148		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000353617		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000405727		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000360332	ENST00000356064		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000360332	ENST00000511289		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000451320		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000429148		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000353617		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000405727		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000374174	ENST00000356064		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000374174	ENST00000511289		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000451320		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000429148		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000353617		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000405727		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000395611	ENST00000356064		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000395611	ENST00000511289		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000451320		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000429148		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000353617		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000405727		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-5UTR	ENST00000459755	ENST00000356064		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
intron-intron	ENST00000459755	ENST00000511289		TCGA	LD	CESC	TCGA-C5-A2LT-01A	MAPK8	chr10	49534008	+	ARFIP1	chr4	153750777	+
Frame-shit	ENST00000215917	ENST00000308342		TCGA	LD	CESC	TCGA-C5-A2LT-01A	SRRD	chr22	26882029	+	SNX32	chr11	65616949	+
5CDS-3UTR	ENST00000215917	ENST00000531795		TCGA	LD	CESC	TCGA-C5-A2LT-01A	SRRD	chr22	26882029	+	SNX32	chr11	65616949	+
In-frame	ENST00000334976	ENST00000376916		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
Frame-shit	ENST00000334976	ENST00000389208		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
5CDS-intron	ENST00000334976	ENST00000597030		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
In-frame	ENST00000376918	ENST00000376916		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
Frame-shit	ENST00000376918	ENST00000389208		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
5CDS-intron	ENST00000376918	ENST00000597030		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
In-frame	ENST00000598585	ENST00000376916		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
Frame-shit	ENST00000598585	ENST00000389208		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
5CDS-intron	ENST00000598585	ENST00000597030		TCGA	LD	CESC	TCGA-C5-A2LV-01A	EMC10	chr19	50984234	+	ASPDH	chr19	51015030	-
intron-3CDS	ENST00000384891	ENST00000338970		TCGA	LD	CESC	TCGA-C5-A2LX-01A	MIR205HG	chr1	209606052	+	RPL14	chr3	40503099	+
intron-3CDS	ENST00000384891	ENST00000396203		TCGA	LD	CESC	TCGA-C5-A2LX-01A	MIR205HG	chr1	209606052	+	RPL14	chr3	40503099	+
intron-3CDS	ENST00000384891	ENST00000416518		TCGA	LD	CESC	TCGA-C5-A2LX-01A	MIR205HG	chr1	209606052	+	RPL14	chr3	40503099	+
intron-intron	ENST00000384891	ENST00000461368		TCGA	LD	CESC	TCGA-C5-A2LX-01A	MIR205HG	chr1	209606052	+	RPL14	chr3	40503099	+
5CDS-intron	ENST00000423118	ENST00000339021		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000355803		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000325437		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000397514		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000397515		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000403747		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000566587		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000406620		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000423118	ENST00000402301		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000339021		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000355803		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000325437		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000397514		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000397515		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000403747		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000566587		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000406620		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-intron	ENST00000262304	ENST00000402301		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000339021		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000355803		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000325437		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000397514		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000397515		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000403747		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000566587		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000406620		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5UTR-intron	ENST00000561991	ENST00000402301		TCGA	LD	CESC	TCGA-C5-A2LX-01A	PKD1	chr16	2155323	-	UBE2I	chr16	1365655	+
5CDS-5UTR	ENST00000421905	ENST00000396720		TCGA	LD	CESC	TCGA-C5-A2M1-01A	PPP1R37	chr19	45596785	+	GLTSCR1	chr19	48173700	+
5CDS-5UTR	ENST00000221462	ENST00000396720		TCGA	LD	CESC	TCGA-C5-A2M1-01A	PPP1R37	chr19	45596785	+	GLTSCR1	chr19	48173700	+
3UTR-5UTR	ENST00000496125	ENST00000396720		TCGA	LD	CESC	TCGA-C5-A2M1-01A	PPP1R37	chr19	45596785	+	GLTSCR1	chr19	48173700	+
In-frame	ENST00000375441	ENST00000434316		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000375441	ENST00000375391		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000375441	ENST00000474393		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
In-frame	ENST00000451881	ENST00000434316		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000451881	ENST00000375391		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000451881	ENST00000474393		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
In-frame	ENST00000326335	ENST00000434316		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000326335	ENST00000375391		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000326335	ENST00000474393		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
In-frame	ENST00000375440	ENST00000434316		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000375440	ENST00000375391		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
5CDS-intron	ENST00000375440	ENST00000474393		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
intron-3CDS	ENST00000463426	ENST00000434316		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
intron-intron	ENST00000463426	ENST00000375391		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
intron-intron	ENST00000463426	ENST00000474393		TCGA	LD	CESC	TCGA-C5-A3HD-01B	CUL4A	chr13	113909439	+	TMCO3	chr13	114193672	+
Frame-shit	ENST00000396472	ENST00000540871		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
In-frame	ENST00000396472	ENST00000261479		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000396472	ENST00000553809		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000396472	ENST00000555764		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
In-frame	ENST00000396472	ENST00000556506		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000382406	ENST00000540871		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
In-frame	ENST00000382406	ENST00000261479		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000382406	ENST00000553809		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000382406	ENST00000555764		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
In-frame	ENST00000382406	ENST00000556506		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000280987	ENST00000540871		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
In-frame	ENST00000280987	ENST00000261479		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000280987	ENST00000553809		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000280987	ENST00000555764		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
In-frame	ENST00000280987	ENST00000556506		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
3UTR-3CDS	ENST00000554052	ENST00000540871		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
3UTR-3CDS	ENST00000554052	ENST00000261479		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
3UTR-3CDS	ENST00000554052	ENST00000553809		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
3UTR-3CDS	ENST00000554052	ENST00000555764		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
3UTR-3CDS	ENST00000554052	ENST00000556506		TCGA	LD	CESC	TCGA-C5-A3HD-01B	FAM177A1	chr14	35515834	+	PSMA6	chr14	35786455	+
Frame-shit	ENST00000377316	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
Frame-shit	ENST00000377316	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
5CDS-intron	ENST00000377316	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
In-frame	ENST00000377321	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
In-frame	ENST00000377321	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
5CDS-intron	ENST00000377321	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
Frame-shit	ENST00000377326	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
Frame-shit	ENST00000377326	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
5CDS-intron	ENST00000377326	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
Frame-shit	ENST00000312049	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
Frame-shit	ENST00000312049	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
5CDS-intron	ENST00000312049	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
In-frame	ENST00000315422	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
In-frame	ENST00000315422	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
5CDS-intron	ENST00000315422	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000443283	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000443283	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-intron	ENST00000443283	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000394374	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000394374	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-intron	ENST00000394374	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000337652	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000337652	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-intron	ENST00000337652	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000394376	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000394376	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-intron	ENST00000394376	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000377313	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000377313	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-intron	ENST00000377313	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000478548	ENST00000418331		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-3CDS	ENST00000478548	ENST00000440289		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
intron-intron	ENST00000478548	ENST00000526550		TCGA	LD	CESC	TCGA-C5-A3HD-01B	MEN1	chr11	64577137	-	PTPRJ	chr11	48149332	+
5CDS-intron	ENST00000377122	ENST00000490126		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-intron	ENST00000377122	ENST00000225410		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000377122	ENST00000588253		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000377122	ENST00000592616		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000377122	ENST00000590858		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-intron	ENST00000417816	ENST00000490126		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-intron	ENST00000417816	ENST00000225410		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000417816	ENST00000588253		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000417816	ENST00000592616		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000417816	ENST00000590858		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-intron	ENST00000377159	ENST00000490126		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-intron	ENST00000377159	ENST00000225410		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000377159	ENST00000588253		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000377159	ENST00000592616		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
5CDS-5UTR	ENST00000377159	ENST00000590858		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-intron	ENST00000377119	ENST00000490126		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-intron	ENST00000377119	ENST00000225410		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-5UTR	ENST00000377119	ENST00000588253		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-5UTR	ENST00000377119	ENST00000592616		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-5UTR	ENST00000377119	ENST00000590858		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-intron	ENST00000464278	ENST00000490126		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-intron	ENST00000464278	ENST00000225410		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-5UTR	ENST00000464278	ENST00000588253		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-5UTR	ENST00000464278	ENST00000592616		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
intron-5UTR	ENST00000464278	ENST00000590858		TCGA	LD	CESC	TCGA-C5-A3HD-01B	NEBL	chr10	21101698	-	ZNHIT3	chr17	34853450	+
Frame-shit	ENST00000261778	ENST00000296543		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
Frame-shit	ENST00000261778	ENST00000398947		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
5CDS-intron	ENST00000261778	ENST00000480277		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
5CDS-intron	ENST00000261778	ENST00000515576		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
intron-3CDS	ENST00000561931	ENST00000296543		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
intron-3CDS	ENST00000561931	ENST00000398947		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
intron-intron	ENST00000561931	ENST00000480277		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
intron-intron	ENST00000561931	ENST00000515576		TCGA	LD	CESC	TCGA-C5-A3HD-01B	TANGO6	chr16	68941478	+	NAA15	chr4	140307287	+
Frame-shit	ENST00000588025	ENST00000396231		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000588025	ENST00000262726		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000588025	ENST00000358439		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000588025	ENST00000356087		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
5CDS-intron	ENST00000588025	ENST00000461800		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000423140	ENST00000396231		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000423140	ENST00000262726		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000423140	ENST00000358439		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000423140	ENST00000356087		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
5CDS-intron	ENST00000423140	ENST00000461800		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000314606	ENST00000396231		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000314606	ENST00000262726		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000314606	ENST00000358439		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000314606	ENST00000356087		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
5CDS-intron	ENST00000314606	ENST00000461800		TCGA	LD	CESC	TCGA-C5-A3HE-01A	FARSA	chr19	13044364	-	EFCAB6	chr22	44112852	-
Frame-shit	ENST00000375759	ENST00000375838		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
Frame-shit	ENST00000375759	ENST00000375847		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
Frame-shit	ENST00000375759	ENST00000375849		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
5CDS-intron	ENST00000375759	ENST00000483270		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
intron-3CDS	ENST00000471538	ENST00000375838		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
intron-3CDS	ENST00000471538	ENST00000375847		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
intron-3CDS	ENST00000471538	ENST00000375849		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
intron-intron	ENST00000471538	ENST00000483270		TCGA	LD	CESC	TCGA-C5-A3HF-01A	SPEN	chr1	16174645	+	DNAJC16	chr1	15886021	+
Frame-shit	ENST00000311234	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000311234	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000311234	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000311234	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-5UTR	ENST00000311234	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-intron	ENST00000311234	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000398119	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000398119	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000398119	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000398119	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-5UTR	ENST00000398119	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-intron	ENST00000398119	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000497989	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000497989	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3UTR	ENST00000497989	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3UTR	ENST00000497989	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-5UTR	ENST00000497989	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-intron	ENST00000497989	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3CDS	ENST00000425000	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3CDS	ENST00000425000	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3UTR	ENST00000425000	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3UTR	ENST00000425000	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-5UTR	ENST00000425000	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-intron	ENST00000425000	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000490542	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000490542	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3UTR	ENST00000490542	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3UTR	ENST00000490542	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-5UTR	ENST00000490542	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-intron	ENST00000490542	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000463928	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000463928	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000463928	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000463928	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-5UTR	ENST00000463928	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-intron	ENST00000463928	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000420668	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
Frame-shit	ENST00000420668	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000420668	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000420668	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-5UTR	ENST00000420668	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5CDS-intron	ENST00000420668	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3CDS	ENST00000491723	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3CDS	ENST00000491723	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3UTR	ENST00000491723	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-3UTR	ENST00000491723	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-5UTR	ENST00000491723	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
5UTR-intron	ENST00000491723	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000442263	ENST00000258761		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000442263	ENST00000433922		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3UTR	ENST00000442263	ENST00000432311		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3UTR	ENST00000442263	ENST00000452975		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-5UTR	ENST00000442263	ENST00000405202		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-intron	ENST00000442263	ENST00000407633		TCGA	LD	CESC	TCGA-C5-A7CG-01A	INTS6	chr13	52025161	-	BZW2	chr7	16714037	+
intron-3CDS	ENST00000490220	ENST00000398907		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000490220	ENST00000398905		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000490220	ENST00000288319		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000398897		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000398911		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000398910		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000417133		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000442448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000453032		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000398919		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000429727		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
intron-intron	ENST00000490220	ENST00000485493		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000398600	ENST00000398907		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000398600	ENST00000398905		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000398600	ENST00000288319		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000398897		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000398911		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000398910		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000417133		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000442448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000453032		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000398919		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000429727		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398600	ENST00000485493		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000398598	ENST00000398907		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000398598	ENST00000398905		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000398598	ENST00000288319		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000398897		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000398911		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000398910		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000417133		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000442448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000453032		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000398919		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000429727		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000398598	ENST00000485493		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000455164	ENST00000398907		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000455164	ENST00000398905		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000455164	ENST00000288319		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000398897		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000398911		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000398910		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000417133		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000442448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000453032		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000398919		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000429727		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000455164	ENST00000485493		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000288383	ENST00000398907		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000288383	ENST00000398905		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
Frame-shit	ENST00000288383	ENST00000288319		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000398897		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000398911		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000398910		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000417133		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000442448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000453032		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000398919		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000429727		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000288383	ENST00000485493		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	MX1	chr21	42809079	+	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000344691	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000344691	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000325074	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000437180	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000300305	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000399240	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000486278	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000494829	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000487990		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000399272		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000489903		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000313806		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000443408		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000482533		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000481448		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000381132		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000381135		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000358356	ENST00000492600		TCGA	LD	CESC	TCGA-C5-A7CJ-01A	RUNX1	chr21	36231771	-	RCAN1	chr21	35896008	-
intron-3CDS	ENST00000538132	ENST00000243903		TCGA	LD	CESC	TCGA-C5-A7CO-01A	AHCY	chr20	32868833	-	ACTR5	chr20	37380774	+
intron-3CDS	ENST00000217426	ENST00000243903		TCGA	LD	CESC	TCGA-C5-A7CO-01A	AHCY	chr20	32868833	-	ACTR5	chr20	37380774	+
intron-3CDS	ENST00000468908	ENST00000243903		TCGA	LD	CESC	TCGA-C5-A7CO-01A	AHCY	chr20	32868833	-	ACTR5	chr20	37380774	+
5CDS-intron	ENST00000394919	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394919	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394919	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394919	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394919	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000342444	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000342444	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000342444	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000342444	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000342444	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317168	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317168	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317168	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317168	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317168	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000545550	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000545550	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000545550	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000545550	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000545550	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317126	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317126	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317126	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317126	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317126	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394915	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394915	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394915	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394915	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394915	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
intron-intron	ENST00000492502	ENST00000401998		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
intron-intron	ENST00000492502	ENST00000361114		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
intron-intron	ENST00000492502	ENST00000398761		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
intron-intron	ENST00000492502	ENST00000418483		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
intron-intron	ENST00000492502	ENST00000398763		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
intron-intron	ENST00000492502	ENST00000604025		TCGA	LD	CESC	TCGA-C5-A7UC-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74139341	-
Frame-shit	ENST00000223273	ENST00000312891		TCGA	LD	CESC	TCGA-C5-A7UC-01A	YAE1D1	chr7	39606146	+	GJC3	chr7	99521226	-
Frame-shit	ENST00000448268	ENST00000312891		TCGA	LD	CESC	TCGA-C5-A7UC-01A	YAE1D1	chr7	39606146	+	GJC3	chr7	99521226	-
Frame-shit	ENST00000432096	ENST00000312891		TCGA	LD	CESC	TCGA-C5-A7UC-01A	YAE1D1	chr7	39606146	+	GJC3	chr7	99521226	-
intron-3CDS	ENST00000469737	ENST00000312891		TCGA	LD	CESC	TCGA-C5-A7UC-01A	YAE1D1	chr7	39606146	+	GJC3	chr7	99521226	-
In-frame	ENST00000354179	ENST00000393847		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000354179	ENST00000412757		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000354179	ENST00000572888		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000439151	ENST00000393847		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000439151	ENST00000412757		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000439151	ENST00000572888		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000347982	ENST00000393847		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000347982	ENST00000412757		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000347982	ENST00000572888		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
intron-3CDS	ENST00000361032	ENST00000393847		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
intron-3CDS	ENST00000361032	ENST00000412757		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
intron-3CDS	ENST00000361032	ENST00000572888		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
intron-3CDS	ENST00000511258	ENST00000393847		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
intron-3CDS	ENST00000511258	ENST00000412757		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
intron-3CDS	ENST00000511258	ENST00000572888		TCGA	LD	CESC	TCGA-C5-A7UH-01A	NSD1	chr5	176619020	+	DPEP2	chr16	68023301	-
In-frame	ENST00000237536	ENST00000373664		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
Frame-shit	ENST00000237536	ENST00000344359		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
5CDS-intron	ENST00000237536	ENST00000598590		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
Frame-shit	ENST00000279034	ENST00000373664		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
In-frame	ENST00000279034	ENST00000344359		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
5CDS-intron	ENST00000279034	ENST00000598590		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
intron-3CDS	ENST00000456801	ENST00000373664		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
intron-3CDS	ENST00000456801	ENST00000344359		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
intron-intron	ENST00000456801	ENST00000598590		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
Frame-shit	ENST00000357779	ENST00000373664		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
In-frame	ENST00000357779	ENST00000344359		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
5CDS-intron	ENST00000357779	ENST00000598590		TCGA	LD	CESC	TCGA-C5-A7UH-01A	SOGA1	chr20	35457457	-	RBL1	chr20	35632269	-
Frame-shit	ENST00000400338	ENST00000216027		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000400338	ENST00000398941		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000400338	ENST00000495977		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
In-frame	ENST00000400335	ENST00000216027		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
In-frame	ENST00000400335	ENST00000398941		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000400335	ENST00000495977		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000327813	ENST00000216027		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000327813	ENST00000398941		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000327813	ENST00000495977		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000407188	ENST00000216027		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
Frame-shit	ENST00000407188	ENST00000398941		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
5CDS-3UTR	ENST00000407188	ENST00000495977		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
3UTR-3CDS	ENST00000479755	ENST00000216027		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
3UTR-3CDS	ENST00000479755	ENST00000398941		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
3UTR-3UTR	ENST00000479755	ENST00000495977		TCGA	LD	CESC	TCGA-C5-A7X3-01A	KREMEN1	chr22	29538088	+	HSCB	chr22	29147229	+
In-frame	ENST00000303127	ENST00000510123		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
In-frame	ENST00000303127	ENST00000389158		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5CDS-intron	ENST00000303127	ENST00000507413		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5CDS-intron	ENST00000303127	ENST00000509257		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
In-frame	ENST00000515209	ENST00000510123		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
In-frame	ENST00000515209	ENST00000389158		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5CDS-intron	ENST00000515209	ENST00000507413		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5CDS-intron	ENST00000515209	ENST00000509257		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5UTR-3CDS	ENST00000506310	ENST00000510123		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5UTR-3CDS	ENST00000506310	ENST00000389158		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5UTR-intron	ENST00000506310	ENST00000507413		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
5UTR-intron	ENST00000506310	ENST00000509257		TCGA	LD	CESC	TCGA-C5-A7X3-01A	LMAN2	chr5	176778174	-	NOP16	chr5	175813910	-
intron-3CDS	ENST00000601806	ENST00000270645		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-intron	ENST00000601806	ENST00000593644		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-3CDS	ENST00000291281	ENST00000270645		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-intron	ENST00000291281	ENST00000593644		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-3CDS	ENST00000433867	ENST00000270645		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-intron	ENST00000433867	ENST00000593644		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-3CDS	ENST00000600194	ENST00000270645		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-intron	ENST00000600194	ENST00000593644		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-3CDS	ENST00000595515	ENST00000270645		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-intron	ENST00000595515	ENST00000593644		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-3CDS	ENST00000593492	ENST00000270645		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
intron-intron	ENST00000593492	ENST00000593644		TCGA	LD	CESC	TCGA-C5-A7X3-01A	PRKD2	chr19	47214900	-	RCN3	chr19	50046448	+
Frame-shit	ENST00000396795	ENST00000422785		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396795	ENST00000604599		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396795	ENST00000538862		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396795	ENST00000229265		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396795	ENST00000535406		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396795	ENST00000540683		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
In-frame	ENST00000319770	ENST00000422785		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000319770	ENST00000604599		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000319770	ENST00000538862		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000319770	ENST00000229265		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000319770	ENST00000535406		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000319770	ENST00000540683		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
In-frame	ENST00000396801	ENST00000422785		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396801	ENST00000604599		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396801	ENST00000538862		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396801	ENST00000229265		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396801	ENST00000535406		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396801	ENST00000540683		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
In-frame	ENST00000361959	ENST00000422785		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000361959	ENST00000604599		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000361959	ENST00000538862		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000361959	ENST00000229265		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000361959	ENST00000535406		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000361959	ENST00000540683		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
In-frame	ENST00000355772	ENST00000422785		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000355772	ENST00000604599		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000355772	ENST00000538862		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000355772	ENST00000229265		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000355772	ENST00000535406		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000355772	ENST00000540683		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
In-frame	ENST00000396799	ENST00000422785		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396799	ENST00000604599		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396799	ENST00000538862		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396799	ENST00000229265		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396799	ENST00000535406		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
5CDS-intron	ENST00000396799	ENST00000540683		TCGA	LD	CESC	TCGA-C5-A7X3-01A	ZNF384	chr12	6778197	-	CDCA3	chr12	6958828	-
Frame-shit	ENST00000341068	ENST00000544547		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
Frame-shit	ENST00000341068	ENST00000332345		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
Frame-shit	ENST00000341068	ENST00000393310		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
Frame-shit	ENST00000341068	ENST00000410093		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
Frame-shit	ENST00000341068	ENST00000409441		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
Frame-shit	ENST00000341068	ENST00000338045		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
5CDS-intron	ENST00000341068	ENST00000462817		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
5CDS-intron	ENST00000341068	ENST00000542845		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
5CDS-intron	ENST00000341068	ENST00000393314		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000489177	ENST00000544547		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000489177	ENST00000332345		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000489177	ENST00000393310		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000489177	ENST00000410093		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000489177	ENST00000409441		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000489177	ENST00000338045		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-intron	ENST00000489177	ENST00000462817		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-intron	ENST00000489177	ENST00000542845		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-intron	ENST00000489177	ENST00000393314		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ANAPC1	chr2	112596015	-	LIMS1	chr2	109292334	+
intron-3CDS	ENST00000263377	ENST00000430939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000263377	ENST00000221742		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000263377	ENST00000600144		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000263377	ENST00000598504		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000263377	ENST00000544886		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000371835	ENST00000430939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000371835	ENST00000221742		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000371835	ENST00000600144		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000371835	ENST00000598504		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000371835	ENST00000544886		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
5UTR-3CDS	ENST00000360016	ENST00000430939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
5UTR-3CDS	ENST00000360016	ENST00000221742		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
5UTR-5UTR	ENST00000360016	ENST00000600144		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
5UTR-5UTR	ENST00000360016	ENST00000598504		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
5UTR-5UTR	ENST00000360016	ENST00000544886		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000602230	ENST00000430939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000602230	ENST00000221742		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000602230	ENST00000600144		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000602230	ENST00000598504		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000602230	ENST00000544886		TCGA	LD	CESC	TCGA-C5-A7X5-01A	BRD4	chr19	15443101	-	SLC1A6	chr19	15083729	-
In-frame	ENST00000233892	ENST00000263960		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000233892	ENST00000409398		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000233892	ENST00000488445		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000233892	ENST00000545340		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000233892	ENST00000409010		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000409916	ENST00000263960		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000409916	ENST00000409398		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000409916	ENST00000488445		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000409916	ENST00000545340		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000409916	ENST00000409010		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000323303	ENST00000263960		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000323303	ENST00000409398		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000323303	ENST00000488445		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000323303	ENST00000545340		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000323303	ENST00000409010		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000448447	ENST00000263960		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000448447	ENST00000409398		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000448447	ENST00000488445		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000448447	ENST00000545340		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000448447	ENST00000409010		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
3UTR-3CDS	ENST00000497443	ENST00000263960		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
3UTR-3CDS	ENST00000497443	ENST00000409398		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
3UTR-intron	ENST00000497443	ENST00000488445		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
3UTR-intron	ENST00000497443	ENST00000545340		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
3UTR-intron	ENST00000497443	ENST00000409010		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000409360	ENST00000263960		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000409360	ENST00000409398		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000409360	ENST00000488445		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000409360	ENST00000545340		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000409360	ENST00000409010		TCGA	LD	CESC	TCGA-C5-A7X5-01A	MOB4	chr2	198405161	+	COQ10B	chr2	198334794	+
In-frame	ENST00000283206	ENST00000295408		TCGA	LD	CESC	TCGA-C5-A7X5-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000421804		TCGA	LD	CESC	TCGA-C5-A7X5-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000409780		TCGA	LD	CESC	TCGA-C5-A7X5-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	LD	CESC	TCGA-C5-A7X5-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	LD	CESC	TCGA-C5-A7X5-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	LD	CESC	TCGA-C5-A7X5-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000319380	ENST00000355797		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
In-frame	ENST00000319380	ENST00000375036		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
In-frame	ENST00000319380	ENST00000449428		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
In-frame	ENST00000319380	ENST00000592148		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
5CDS-5UTR	ENST00000319380	ENST00000585519		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
5CDS-5UTR	ENST00000319380	ENST00000588114		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
5CDS-5UTR	ENST00000319380	ENST00000589082		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000587581	ENST00000355797		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000587581	ENST00000375036		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000587581	ENST00000449428		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000587581	ENST00000592148		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000587581	ENST00000585519		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000587581	ENST00000588114		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000587581	ENST00000589082		TCGA	LD	CESC	TCGA-C5-A7X5-01A	UBE2O	chr17	74448807	-	MXRA7	chr17	74684258	-
Frame-shit	ENST00000369426	ENST00000283206		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
5CDS-intron	ENST00000369426	ENST00000463427		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
Frame-shit	ENST00000235521	ENST00000283206		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
5CDS-intron	ENST00000235521	ENST00000463427		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
Frame-shit	ENST00000537870	ENST00000283206		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
5CDS-intron	ENST00000537870	ENST00000463427		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
intron-3CDS	ENST00000497761	ENST00000283206		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
intron-intron	ENST00000497761	ENST00000463427		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	TMEM87B	chr2	112838634	+
Frame-shit	ENST00000369426	ENST00000327939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	ZAR1	chr4	48496118	+
Frame-shit	ENST00000235521	ENST00000327939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	ZAR1	chr4	48496118	+
Frame-shit	ENST00000537870	ENST00000327939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	ZAR1	chr4	48496118	+
intron-3CDS	ENST00000497761	ENST00000327939		TCGA	LD	CESC	TCGA-C5-A7X5-01A	WARS2	chr1	119618973	-	ZAR1	chr4	48496118	+
Frame-shit	ENST00000360647	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
Frame-shit	ENST00000468369	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
In-frame	ENST00000484491	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
In-frame	ENST00000544464	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
Frame-shit	ENST00000492394	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
Frame-shit	ENST00000485866	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
5UTR-3CDS	ENST00000497929	ENST00000296220		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF148	chr3	124996570	-	OSBPL11	chr3	125257477	-
intron-intron	ENST00000586458	ENST00000601590		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000586458	ENST00000599180		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000586458	ENST00000246549		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5UTR-intron	ENST00000334116	ENST00000601590		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5UTR-5UTR	ENST00000334116	ENST00000599180		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5UTR-5UTR	ENST00000334116	ENST00000246549		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000591340	ENST00000601590		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000591340	ENST00000599180		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000591340	ENST00000246549		TCGA	LD	CESC	TCGA-C5-A7X5-01A	ZNF529	chr19	37063235	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000462484	ENST00000372124		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000462484	ENST00000339463		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000462484	ENST00000450530		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000462484	ENST00000534944		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000462484	ENST00000372122		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000462484	ENST00000372123		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5UTR-intron	ENST00000334856	ENST00000372124		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5UTR-intron	ENST00000334856	ENST00000339463		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5UTR-intron	ENST00000334856	ENST00000450530		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5UTR-intron	ENST00000334856	ENST00000534944		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5UTR-intron	ENST00000334856	ENST00000372122		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5UTR-intron	ENST00000334856	ENST00000372123		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000460843	ENST00000372124		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000460843	ENST00000339463		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000460843	ENST00000450530		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000460843	ENST00000534944		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000460843	ENST00000372122		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
5CDS-intron	ENST00000460843	ENST00000372123		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
3UTR-intron	ENST00000371394	ENST00000372124		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
3UTR-intron	ENST00000371394	ENST00000339463		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
3UTR-intron	ENST00000371394	ENST00000450530		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
3UTR-intron	ENST00000371394	ENST00000534944		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
3UTR-intron	ENST00000371394	ENST00000372122		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
3UTR-intron	ENST00000371394	ENST00000372123		TCGA	LD	CESC	TCGA-C5-A7XC-01A	EHMT1	chr9	140513501	+	GFI1B	chr9	135853851	+
Frame-shit	ENST00000544305	ENST00000373484		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000544305	ENST00000409190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000374630	ENST00000373484		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000374630	ENST00000409190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000400191	ENST00000373484		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000400191	ENST00000409190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000374632	ENST00000373484		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000374632	ENST00000409190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000374627	ENST00000373484		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000374627	ENST00000409190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
intron-3CDS	ENST00000465676	ENST00000373484		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
intron-3CDS	ENST00000465676	ENST00000409190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	EPHB2	chr1	23111569	+	SYNC	chr1	33161645	-
Frame-shit	ENST00000375120	ENST00000377837		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
Frame-shit	ENST00000375120	ENST00000377836		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
5CDS-5UTR	ENST00000375120	ENST00000471190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
5CDS-intron	ENST00000375120	ENST00000377834		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
5CDS-intron	ENST00000375120	ENST00000487437		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
5CDS-intron	ENST00000375120	ENST00000489730		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
intron-3CDS	ENST00000466697	ENST00000377837		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
intron-3CDS	ENST00000466697	ENST00000377836		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
intron-5UTR	ENST00000466697	ENST00000471190		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
intron-intron	ENST00000466697	ENST00000377834		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
intron-intron	ENST00000466697	ENST00000487437		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
intron-intron	ENST00000466697	ENST00000489730		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	OTUD3	chr1	20209227	+	HES2	chr1	6473342	-
Frame-shit	ENST00000369784	ENST00000443756		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
Frame-shit	ENST00000369784	ENST00000545132		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
Frame-shit	ENST00000369784	ENST00000294353		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
Frame-shit	ENST00000487146	ENST00000443756		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
Frame-shit	ENST00000487146	ENST00000545132		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
Frame-shit	ENST00000487146	ENST00000294353		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
In-frame	ENST00000602849	ENST00000443756		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
In-frame	ENST00000602849	ENST00000545132		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
In-frame	ENST00000602849	ENST00000294353		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	RBM15	chr1	110882624	+	ZYG11B	chr1	53250549	+
5UTR-3CDS	ENST00000430629	ENST00000608083		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000430629	ENST00000377855		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000430629	ENST00000545482		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000430629	ENST00000361521		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000430629	ENST00000377842		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000430629	ENST00000377845		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-intron	ENST00000430629	ENST00000541130		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000536657	ENST00000608083		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000536657	ENST00000377855		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000536657	ENST00000545482		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000536657	ENST00000361521		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000536657	ENST00000377842		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000536657	ENST00000377845		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
5UTR-intron	ENST00000536657	ENST00000541130		TCGA	LD	CESC	TCGA-C5-A8YQ-01A	WASF2	chr1	27816497	-	ACOT7	chr1	6355040	-
Frame-shit	ENST00000224337	ENST00000357947		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
5CDS-5UTR	ENST00000224337	ENST00000469598		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
Frame-shit	ENST00000371176	ENST00000357947		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
5CDS-5UTR	ENST00000371176	ENST00000469598		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
Frame-shit	ENST00000427367	ENST00000357947		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
5CDS-5UTR	ENST00000427367	ENST00000469598		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
Frame-shit	ENST00000413476	ENST00000357947		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
5CDS-5UTR	ENST00000413476	ENST00000469598		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
Frame-shit	ENST00000495266	ENST00000357947		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
5CDS-5UTR	ENST00000495266	ENST00000469598		TCGA	LD	CESC	TCGA-C5-A8YR-01A	BLNK	chr10	98031109	-	TLL2	chr10	98157059	-
5CDS-5UTR	ENST00000417172	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-intron	ENST00000417172	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-5UTR	ENST00000361388	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-intron	ENST00000361388	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-5UTR	ENST00000422748	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-intron	ENST00000422748	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-5UTR	ENST00000361675	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-intron	ENST00000361675	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-5UTR	ENST00000361901	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
5CDS-intron	ENST00000361901	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-5UTR	ENST00000393118	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-intron	ENST00000393118	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-5UTR	ENST00000495522	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-intron	ENST00000495522	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-5UTR	ENST00000424922	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-intron	ENST00000424922	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-5UTR	ENST00000543443	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-intron	ENST00000543443	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-5UTR	ENST00000466704	ENST00000275767		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
intron-intron	ENST00000466704	ENST00000466307		TCGA	LD	CESC	TCGA-C5-A8YR-01A	CALD1	chr7	134552555	+	TMEM140	chr7	134849170	+
Frame-shit	ENST00000359376	ENST00000537098		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
Frame-shit	ENST00000359376	ENST00000539778		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
5CDS-3UTR	ENST00000359376	ENST00000566513		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
5CDS-3UTR	ENST00000359376	ENST00000398040		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
intron-3CDS	ENST00000565400	ENST00000537098		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
intron-3CDS	ENST00000565400	ENST00000539778		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
intron-3UTR	ENST00000565400	ENST00000566513		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
intron-3UTR	ENST00000565400	ENST00000398040		TCGA	LD	CESC	TCGA-C5-A8YR-01A	PLCG2	chr16	81819787	+	CMIP	chr16	81733290	+
5CDS-intron	ENST00000415807	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
5CDS-intron	ENST00000336824	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
5CDS-intron	ENST00000416957	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
5CDS-intron	ENST00000392699	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
5CDS-intron	ENST00000421757	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
5CDS-intron	ENST00000423424	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
intron-intron	ENST00000476794	ENST00000410534		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	SOX2-OT	chr3	181417386	+
Frame-shit	ENST00000415807	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000415807	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000415807	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000336824	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000336824	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000336824	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000416957	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000416957	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000416957	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000392699	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000392699	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000392699	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000421757	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000421757	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000421757	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000423424	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000423424	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000423424	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000476794	ENST00000433971		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000476794	ENST00000345063		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000476794	ENST00000488841		TCGA	LD	CESC	TCGA-C5-A8ZZ-01A	FNDC3B	chr3	171830380	+	TPRG1	chr3	189028175	+
In-frame	ENST00000369705	ENST00000513973		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
In-frame	ENST00000369705	ENST00000512866		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
In-frame	ENST00000369705	ENST00000283977		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
In-frame	ENST00000369705	ENST00000506587		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000541327	ENST00000513973		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000541327	ENST00000512866		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000541327	ENST00000283977		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000541327	ENST00000506587		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000543031	ENST00000513973		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000543031	ENST00000512866		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000543031	ENST00000283977		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
Frame-shit	ENST00000543031	ENST00000506587		TCGA	LD	CESC	TCGA-C5-A901-01A	ME1	chr6	84055892	-	PGM3	chr6	83885779	-
In-frame	ENST00000360001	ENST00000378891		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
In-frame	ENST00000360001	ENST00000378888		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
In-frame	ENST00000263741	ENST00000378891		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
In-frame	ENST00000263741	ENST00000378888		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
In-frame	ENST00000545427	ENST00000378891		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
In-frame	ENST00000545427	ENST00000378888		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
intron-3CDS	ENST00000459994	ENST00000378891		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
intron-3CDS	ENST00000459994	ENST00000378888		TCGA	LD	CESC	TCGA-C5-A902-01A	SDF4	chr1	1158624	-	DVL1	chr1	1278138	-
In-frame	ENST00000352456	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000352456	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000352456	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000352456	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000352456	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
In-frame	ENST00000595018	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000595018	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000595018	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000595018	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000595018	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
In-frame	ENST00000392006	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000392006	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000392006	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000392006	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000392006	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-3CDS	ENST00000378215	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-3CDS	ENST00000378215	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-3CDS	ENST00000378215	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-intron	ENST00000378215	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-intron	ENST00000378215	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
In-frame	ENST00000602130	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000602130	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000602130	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000602130	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000602130	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
In-frame	ENST00000593587	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000593587	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000593587	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000593587	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000593587	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
In-frame	ENST00000263367	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000263367	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
Frame-shit	ENST00000263367	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000263367	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
5CDS-intron	ENST00000263367	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-3CDS	ENST00000594207	ENST00000590333		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-3CDS	ENST00000594207	ENST00000309383		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-3CDS	ENST00000594207	ENST00000585418		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-intron	ENST00000594207	ENST00000326848		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
intron-intron	ENST00000594207	ENST00000588584		TCGA	LD	CESC	TCGA-C5-A907-01A	HNRNPUL1	chr19	41787180	+	BRSK1	chr19	55795889	+
In-frame	ENST00000316763	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
In-frame	ENST00000316763	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
In-frame	ENST00000377011	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
In-frame	ENST00000377011	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000599538	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000599538	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000443401	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000443401	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000601341	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000601341	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000594948	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000594948	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000601912	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000601912	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000594092	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000594092	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000593919	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
Frame-shit	ENST00000593919	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
5UTR-3CDS	ENST00000424804	ENST00000412770		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
5UTR-3CDS	ENST00000424804	ENST00000587283		TCGA	LD	CESC	TCGA-C5-A907-01A	VRK3	chr19	50504047	-	PPP6R1	chr19	55753856	-
5UTR-intron	ENST00000333952	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000333952	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000333952	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-intron	ENST00000598513	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000598513	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000598513	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-intron	ENST00000599012	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000599012	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000599012	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
intron-intron	ENST00000594681	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
intron-3UTR	ENST00000594681	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
intron-3UTR	ENST00000594681	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-intron	ENST00000598806	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000598806	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000598806	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-intron	ENST00000601828	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000601828	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000601828	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
intron-intron	ENST00000601413	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
intron-3UTR	ENST00000601413	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
intron-3UTR	ENST00000601413	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-intron	ENST00000595293	ENST00000592765		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000595293	ENST00000361680		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5UTR-3UTR	ENST00000595293	ENST00000355868		TCGA	LD	CESC	TCGA-C5-A907-01A	ZNF677	chr19	53758087	-	WDR88	chr19	33666302	+
5CDS-5UTR	ENST00000359543	ENST00000329565		TCGA	LD	CESC	TCGA-DG-A2KH-01A	EMP2	chr16	10641397	-	SNN	chr16	11769831	+
intron-5UTR	ENST00000566033	ENST00000329565		TCGA	LD	CESC	TCGA-DG-A2KH-01A	EMP2	chr16	10641397	-	SNN	chr16	11769831	+
5CDS-5UTR	ENST00000536829	ENST00000329565		TCGA	LD	CESC	TCGA-DG-A2KH-01A	EMP2	chr16	10641397	-	SNN	chr16	11769831	+
In-frame	ENST00000468888	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000468888	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000468888	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000468888	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000468888	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000399362	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000399362	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000399362	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000399362	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000399362	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
intron-3CDS	ENST00000539981	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
intron-5UTR	ENST00000539981	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
intron-5UTR	ENST00000539981	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
intron-5UTR	ENST00000539981	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
intron-intron	ENST00000539981	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000359576	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000359576	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000359576	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000359576	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000359576	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-3CDS	ENST00000307312	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-5UTR	ENST00000307312	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-5UTR	ENST00000307312	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-5UTR	ENST00000307312	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-intron	ENST00000307312	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000480013	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000480013	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000480013	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000480013	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000480013	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000461133	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000461133	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000461133	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000461133	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000461133	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000313350	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000313350	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000313350	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000313350	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000313350	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000487200	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000487200	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000487200	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000487200	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000487200	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
In-frame	ENST00000333778	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000333778	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000333778	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000333778	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5CDS-intron	ENST00000333778	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-3CDS	ENST00000482896	ENST00000307363		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-5UTR	ENST00000482896	ENST00000399402		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-5UTR	ENST00000482896	ENST00000445488		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-5UTR	ENST00000482896	ENST00000307377		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-intron	ENST00000482896	ENST00000497796		TCGA	LD	CESC	TCGA-DG-A2KL-01A	CLASP2	chr3	33673784	-	GLB1	chr3	33114205	-
5UTR-intron	ENST00000511725	ENST00000277198		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
5UTR-3UTR	ENST00000511725	ENST00000297979		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
5UTR-3UTR	ENST00000511725	ENST00000375315		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
5UTR-intron	ENST00000511725	ENST00000395357		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
5UTR-intron	ENST00000511725	ENST00000425634		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
5UTR-intron	ENST00000511725	ENST00000433691		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
5UTR-intron	ENST00000511725	ENST00000473778		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000253815	ENST00000277198		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000253815	ENST00000297979		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000253815	ENST00000375315		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000253815	ENST00000395357		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000253815	ENST00000425634		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000253815	ENST00000433691		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000253815	ENST00000473778		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000398733	ENST00000277198		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000398733	ENST00000297979		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000398733	ENST00000375315		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000398733	ENST00000395357		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000398733	ENST00000425634		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000398733	ENST00000433691		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000398733	ENST00000473778		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000505548	ENST00000277198		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000505548	ENST00000297979		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000505548	ENST00000375315		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000505548	ENST00000395357		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000505548	ENST00000425634		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000505548	ENST00000433691		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000505548	ENST00000473778		TCGA	LD	CESC	TCGA-DS-A0VL-01A	UBE2D2	chr5	138906197	+	C9orf3	chr9	97848964	+
intron-3CDS	ENST00000351097	ENST00000299340		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
intron-3UTR	ENST00000351097	ENST00000435845		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
intron-intron	ENST00000351097	ENST00000400043		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
In-frame	ENST00000285679	ENST00000299340		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5CDS-3UTR	ENST00000285679	ENST00000435845		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5CDS-intron	ENST00000285679	ENST00000400043		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
In-frame	ENST00000285681	ENST00000299340		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5CDS-3UTR	ENST00000285681	ENST00000435845		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5CDS-intron	ENST00000285681	ENST00000400043		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
In-frame	ENST00000400183	ENST00000299340		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5CDS-3UTR	ENST00000400183	ENST00000435845		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5CDS-intron	ENST00000400183	ENST00000400043		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
intron-3CDS	ENST00000547201	ENST00000299340		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
intron-3UTR	ENST00000547201	ENST00000435845		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
intron-intron	ENST00000547201	ENST00000400043		TCGA	LD	CESC	TCGA-DS-A0VL-01A	USP25	chr21	17191165	+	CYYR1	chr21	27840950	-
5UTR-3CDS	ENST00000368655	ENST00000271638		TCGA	LD	CESC	TCGA-DS-A0VM-01A	GATAD2B	chr1	153895209	-	S100A11	chr1	152006276	-
5UTR-5UTR	ENST00000368655	ENST00000478109		TCGA	LD	CESC	TCGA-DS-A0VM-01A	GATAD2B	chr1	153895209	-	S100A11	chr1	152006276	-
5CDS-intron	ENST00000427191	ENST00000395146		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000427191	ENST00000307808		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000427191	ENST00000544085		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-3UTR	ENST00000427191	ENST00000511996		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000436978	ENST00000395146		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000436978	ENST00000307808		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000436978	ENST00000544085		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-3UTR	ENST00000436978	ENST00000511996		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
intron-intron	ENST00000502971	ENST00000395146		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
intron-intron	ENST00000502971	ENST00000307808		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
intron-intron	ENST00000502971	ENST00000544085		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
intron-3UTR	ENST00000502971	ENST00000511996		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000411767	ENST00000395146		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000411767	ENST00000307808		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000411767	ENST00000544085		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-3UTR	ENST00000411767	ENST00000511996		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000316707	ENST00000395146		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000316707	ENST00000307808		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000316707	ENST00000544085		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-3UTR	ENST00000316707	ENST00000511996		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000511467	ENST00000395146		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000511467	ENST00000307808		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-intron	ENST00000511467	ENST00000544085		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5CDS-3UTR	ENST00000511467	ENST00000511996		TCGA	LD	CESC	TCGA-DS-A0VN-01A	PTPN13	chr4	87695684	+	AFF1	chr4	87894982	+
5UTR-3CDS	ENST00000602758	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602758	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602719	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602719	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
intron-3CDS	ENST00000602583	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
intron-3CDS	ENST00000602583	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602675	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602675	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000284245	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000284245	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602914	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602914	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602766	ENST00000253457		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
5UTR-3CDS	ENST00000602766	ENST00000435200		TCGA	LD	CESC	TCGA-DS-A1O9-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814886	-
Frame-shit	ENST00000302349	ENST00000261692		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000302349	ENST00000538446		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000302349	ENST00000535979		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000302349	ENST00000542174		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000302349	ENST00000544658		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
Frame-shit	ENST00000541076	ENST00000261692		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000541076	ENST00000538446		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000541076	ENST00000535979		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000541076	ENST00000542174		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000541076	ENST00000544658		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
In-frame	ENST00000606320	ENST00000261692		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000606320	ENST00000538446		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000606320	ENST00000535979		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000606320	ENST00000542174		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000606320	ENST00000544658		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
Frame-shit	ENST00000392425	ENST00000261692		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000392425	ENST00000538446		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000392425	ENST00000535979		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000392425	ENST00000542174		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000392425	ENST00000544658		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
intron-3CDS	ENST00000539639	ENST00000261692		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
intron-5UTR	ENST00000539639	ENST00000538446		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
intron-5UTR	ENST00000539639	ENST00000535979		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
intron-5UTR	ENST00000539639	ENST00000542174		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
intron-5UTR	ENST00000539639	ENST00000544658		TCGA	LD	CESC	TCGA-DS-A1O9-01A	MPHOSPH9	chr12	123645328	-	CDK2AP1	chr12	123751829	-
intron-intron	ENST00000298198	ENST00000310653		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PGM2L1	chr11	74047729	-	RAB6A	chr11	73390972	-
intron-intron	ENST00000298198	ENST00000336083		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PGM2L1	chr11	74047729	-	RAB6A	chr11	73390972	-
intron-intron	ENST00000298198	ENST00000536566		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PGM2L1	chr11	74047729	-	RAB6A	chr11	73390972	-
intron-intron	ENST00000298198	ENST00000541588		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PGM2L1	chr11	74047729	-	RAB6A	chr11	73390972	-
In-frame	ENST00000282406	ENST00000330266		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
In-frame	ENST00000282406	ENST00000405975		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
In-frame	ENST00000282406	ENST00000415080		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
In-frame	ENST00000282406	ENST00000405006		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
5CDS-intron	ENST00000282406	ENST00000485353		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
5CDS-intron	ENST00000282406	ENST00000402360		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
5CDS-intron	ENST00000282406	ENST00000404790		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
5CDS-intron	ENST00000282406	ENST00000403856		TCGA	LD	CESC	TCGA-DS-A1O9-01A	PLEKHH2	chr2	43871935	+	THADA	chr2	43755127	-
Frame-shit	ENST00000313117	ENST00000449105		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
In-frame	ENST00000313117	ENST00000409636		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000313117	ENST00000378915		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000313117	ENST00000608859		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000313117	ENST00000409328		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000313117	ENST00000358367		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
In-frame	ENST00000313117	ENST00000410076		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
5CDS-5UTR	ENST00000313117	ENST00000498516		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000449105		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000409636		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000378915		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000608859		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000409328		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000358367		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-3CDS	ENST00000446327	ENST00000410076		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
intron-5UTR	ENST00000446327	ENST00000498516		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000409276	ENST00000449105		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
In-frame	ENST00000409276	ENST00000409636		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000409276	ENST00000378915		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000409276	ENST00000608859		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000409276	ENST00000409328		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000409276	ENST00000358367		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
In-frame	ENST00000409276	ENST00000410076		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
5CDS-5UTR	ENST00000409276	ENST00000498516		TCGA	LD	CESC	TCGA-DS-A1O9-01A	SRSF7	chr2	38973286	-	HNRNPLL	chr2	38829742	-
Frame-shit	ENST00000373867	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000373867	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000373868	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000373868	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000442566	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000442566	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000277705	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000277705	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000419214	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000419214	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
In-frame	ENST00000468840	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000468840	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000435852	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000435852	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000422313	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000422313	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
intron-3CDS	ENST00000510215	ENST00000296370		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
intron-3UTR	ENST00000510215	ENST00000513778		TCGA	LD	CESC	TCGA-DS-A1OB-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000533820	ENST00000524482		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533820	ENST00000534078		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533820	ENST00000526171		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533820	ENST00000279242		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533820	ENST00000531705		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-3UTR	ENST00000533129	ENST00000524482		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533129	ENST00000534078		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533129	ENST00000526171		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533129	ENST00000279242		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000533129	ENST00000531705		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-3UTR	ENST00000524773	ENST00000524482		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000524773	ENST00000534078		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000524773	ENST00000526171		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000524773	ENST00000279242		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000524773	ENST00000531705		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-3UTR	ENST00000279247	ENST00000524482		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000279247	ENST00000534078		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000279247	ENST00000526171		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000279247	ENST00000279242		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000279247	ENST00000531705		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
intron-3UTR	ENST00000527469	ENST00000524482		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
intron-intron	ENST00000527469	ENST00000534078		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
intron-intron	ENST00000527469	ENST00000526171		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
intron-intron	ENST00000527469	ENST00000279242		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
intron-intron	ENST00000527469	ENST00000531705		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-3UTR	ENST00000527323	ENST00000524482		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000527323	ENST00000534078		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000527323	ENST00000526171		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000527323	ENST00000279242		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-intron	ENST00000527323	ENST00000531705		TCGA	LD	CESC	TCGA-DS-A1OC-01A	CAPN1	chr11	64956217	+	MRPL49	chr11	64891974	+
5CDS-5UTR	ENST00000373314	ENST00000316694		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373314	ENST00000352886		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373314	ENST00000539052		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373314	ENST00000354098		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373312	ENST00000316694		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373312	ENST00000352886		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373312	ENST00000539052		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000373312	ENST00000354098		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5UTR-5UTR	ENST00000468379	ENST00000316694		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5UTR-5UTR	ENST00000468379	ENST00000352886		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5UTR-5UTR	ENST00000468379	ENST00000539052		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
5UTR-5UTR	ENST00000468379	ENST00000354098		TCGA	LD	CESC	TCGA-DS-A1OC-01A	FAM129B	chr9	130293927	-	SHMT1	chr17	18259314	-
In-frame	ENST00000287996	ENST00000375512		TCGA	LD	CESC	TCGA-DS-A1OC-01A	IPPK	chr9	95418738	-	BICD2	chr9	95491518	-
In-frame	ENST00000287996	ENST00000356884		TCGA	LD	CESC	TCGA-DS-A1OC-01A	IPPK	chr9	95418738	-	BICD2	chr9	95491518	-
intron-3CDS	ENST00000486841	ENST00000375512		TCGA	LD	CESC	TCGA-DS-A1OC-01A	IPPK	chr9	95418738	-	BICD2	chr9	95491518	-
intron-3CDS	ENST00000486841	ENST00000356884		TCGA	LD	CESC	TCGA-DS-A1OC-01A	IPPK	chr9	95418738	-	BICD2	chr9	95491518	-
intron-3CDS	ENST00000375522	ENST00000375512		TCGA	LD	CESC	TCGA-DS-A1OC-01A	IPPK	chr9	95418738	-	BICD2	chr9	95491518	-
intron-3CDS	ENST00000375522	ENST00000356884		TCGA	LD	CESC	TCGA-DS-A1OC-01A	IPPK	chr9	95418738	-	BICD2	chr9	95491518	-
In-frame	ENST00000262189	ENST00000409508		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
In-frame	ENST00000262189	ENST00000328843		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
5CDS-intron	ENST00000262189	ENST00000465593		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
In-frame	ENST00000355193	ENST00000409508		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
In-frame	ENST00000355193	ENST00000328843		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
5CDS-intron	ENST00000355193	ENST00000465593		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-3CDS	ENST00000485655	ENST00000409508		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-3CDS	ENST00000485655	ENST00000328843		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-intron	ENST00000485655	ENST00000465593		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-3CDS	ENST00000485241	ENST00000409508		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-3CDS	ENST00000485241	ENST00000328843		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-intron	ENST00000485241	ENST00000465593		TCGA	LD	CESC	TCGA-DS-A1OC-01A	KMT2C	chr7	152007051	-	DNAH11	chr7	21856085	+
intron-3CDS	ENST00000427025	ENST00000450536		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000427025	ENST00000367663		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000427025	ENST00000409812		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000427025	ENST00000258062		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000427025	ENST00000415951		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-intron	ENST00000427025	ENST00000531675		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000343505	ENST00000450536		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000343505	ENST00000367663		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000343505	ENST00000409812		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000343505	ENST00000258062		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000343505	ENST00000415951		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-intron	ENST00000343505	ENST00000531675		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000479393	ENST00000450536		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000479393	ENST00000367663		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000479393	ENST00000409812		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000479393	ENST00000258062		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000479393	ENST00000415951		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
intron-intron	ENST00000479393	ENST00000531675		TCGA	LD	CESC	TCGA-DS-A1OC-01A	NHSL1	chr6	139013613	-	REPS1	chr6	139242261	-
5UTR-3CDS	ENST00000362003	ENST00000255622		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000362003	ENST00000496514		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-5UTR	ENST00000362003	ENST00000429163		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000400151	ENST00000255622		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000400151	ENST00000496514		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-5UTR	ENST00000400151	ENST00000429163		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
3UTR-3CDS	ENST00000482726	ENST00000255622		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
3UTR-3CDS	ENST00000482726	ENST00000496514		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
3UTR-5UTR	ENST00000482726	ENST00000429163		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000470161	ENST00000255622		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000470161	ENST00000496514		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-5UTR	ENST00000470161	ENST00000429163		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000521023	ENST00000255622		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-3CDS	ENST00000521023	ENST00000496514		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
5UTR-5UTR	ENST00000521023	ENST00000429163		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
intron-3CDS	ENST00000505655	ENST00000255622		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
intron-3CDS	ENST00000505655	ENST00000496514		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
intron-5UTR	ENST00000505655	ENST00000429163		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PCGF3	chr4	699759	+	PDE6B	chr4	647641	+
In-frame	ENST00000368279	ENST00000361084		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
5CDS-3UTR	ENST00000368279	ENST00000487325		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
In-frame	ENST00000368273	ENST00000361084		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
5CDS-3UTR	ENST00000368273	ENST00000487325		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
In-frame	ENST00000368277	ENST00000361084		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
5CDS-3UTR	ENST00000368277	ENST00000487325		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
In-frame	ENST00000565805	ENST00000361084		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
5CDS-3UTR	ENST00000565805	ENST00000487325		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
In-frame	ENST00000567140	ENST00000361084		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
5CDS-3UTR	ENST00000567140	ENST00000487325		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PMF1	chr1	156182967	+	RAB25	chr1	156038061	+
5CDS-intron	ENST00000587708	ENST00000592889		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000587708	ENST00000588992		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000587708	ENST00000344990		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000587708	ENST00000246532		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000587708	ENST00000592537		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000587708	ENST00000587101		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000591949	ENST00000592889		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000591949	ENST00000588992		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000591949	ENST00000344990		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000591949	ENST00000246532		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000591949	ENST00000592537		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000591949	ENST00000587101		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000222266	ENST00000592889		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000222266	ENST00000588992		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000222266	ENST00000344990		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000222266	ENST00000246532		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000222266	ENST00000592537		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
5CDS-intron	ENST00000222266	ENST00000587101		TCGA	LD	CESC	TCGA-DS-A1OC-01A	PSENEN	chr19	36237424	+	IGFLR1	chr19	36230670	-
intron-3CDS	ENST00000512913	ENST00000232458		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000512913	ENST00000392692		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000512913	ENST00000427830		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000512913	ENST00000417960		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000512913	ENST00000441497		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000512913	ENST00000540509		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000265073	ENST00000232458		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000265073	ENST00000392692		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000265073	ENST00000427830		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000265073	ENST00000417960		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000265073	ENST00000441497		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000265073	ENST00000540509		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000515355	ENST00000232458		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000515355	ENST00000392692		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000515355	ENST00000427830		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000515355	ENST00000417960		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000515355	ENST00000441497		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000515355	ENST00000540509		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000502897	ENST00000232458		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000502897	ENST00000392692		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000502897	ENST00000427830		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000502897	ENST00000417960		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000502897	ENST00000441497		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5UTR-3CDS	ENST00000502897	ENST00000540509		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000504789	ENST00000232458		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000504789	ENST00000392692		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000504789	ENST00000427830		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000504789	ENST00000417960		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000504789	ENST00000441497		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
intron-3CDS	ENST00000504789	ENST00000540509		TCGA	LD	CESC	TCGA-DS-A1OC-01A	SUB1	chr5	32585731	+	ECT2	chr3	172479400	+
5CDS-intron	ENST00000450454	ENST00000495646		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000450454	ENST00000336689		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000450454	ENST00000437606		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000450454	ENST00000449467		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374601	ENST00000495646		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374601	ENST00000336689		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374601	ENST00000437606		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000374601	ENST00000449467		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000461794	ENST00000495646		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000461794	ENST00000336689		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000461794	ENST00000437606		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000461794	ENST00000449467		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TCEA3	chr1	23743742	-	ASAP3	chr1	23782687	-
In-frame	ENST00000373463	ENST00000291416		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
In-frame	ENST00000373463	ENST00000543586		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
5CDS-5UTR	ENST00000373463	ENST00000485148		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
In-frame	ENST00000329151	ENST00000291416		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
In-frame	ENST00000329151	ENST00000543586		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
5CDS-5UTR	ENST00000329151	ENST00000485148		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
5UTR-3CDS	ENST00000475208	ENST00000291416		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
5UTR-3CDS	ENST00000475208	ENST00000543586		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
5UTR-5UTR	ENST00000475208	ENST00000485148		TCGA	LD	CESC	TCGA-DS-A1OC-01A	TMEM54	chr1	33363727	-	TRIM62	chr1	33631167	-
5UTR-5UTR	ENST00000441788	ENST00000382159		TCGA	LD	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	GNG7	chr19	2520723	-
intron-5UTR	ENST00000313639	ENST00000382159		TCGA	LD	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	GNG7	chr19	2520723	-
intron-5UTR	ENST00000395095	ENST00000382159		TCGA	LD	CESC	TCGA-DS-A1OD-01A	FZR1	chr19	3506472	+	GNG7	chr19	2520723	-
In-frame	ENST00000589123	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000589123	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000346156	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000346156	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000395111	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000395111	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000586919	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000586919	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000341919	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000341919	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000590282	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000590282	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000443272	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000443272	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
intron-3CDS	ENST00000588839	ENST00000252622		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
intron-5UTR	ENST00000588839	ENST00000589532		TCGA	LD	CESC	TCGA-DS-A1OD-01A	NFIC	chr19	3435205	+	LSM7	chr19	2324195	-
In-frame	ENST00000541529	ENST00000356607		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
5CDS-intron	ENST00000541529	ENST00000538836		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
5CDS-3UTR	ENST00000541529	ENST00000492696		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
In-frame	ENST00000270776	ENST00000356607		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
5CDS-intron	ENST00000270776	ENST00000538836		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
5CDS-3UTR	ENST00000270776	ENST00000492696		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
In-frame	ENST00000538557	ENST00000356607		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
5CDS-intron	ENST00000538557	ENST00000538836		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
5CDS-3UTR	ENST00000538557	ENST00000492696		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
intron-3CDS	ENST00000498356	ENST00000356607		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
intron-intron	ENST00000498356	ENST00000538836		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
intron-3UTR	ENST00000498356	ENST00000492696		TCGA	LD	CESC	TCGA-DS-A1OD-01A	PGD	chr1	10460629	+	PEX14	chr1	10596270	+
Frame-shit	ENST00000400911	ENST00000266557		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
5CDS-3UTR	ENST00000400911	ENST00000541233		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
Frame-shit	ENST00000361716	ENST00000266557		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
5CDS-3UTR	ENST00000361716	ENST00000541233		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
5UTR-3CDS	ENST00000544432	ENST00000266557		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
5UTR-3UTR	ENST00000544432	ENST00000541233		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
Frame-shit	ENST00000535180	ENST00000266557		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
5CDS-3UTR	ENST00000535180	ENST00000541233		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
Frame-shit	ENST00000396308	ENST00000266557		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
5CDS-3UTR	ENST00000396308	ENST00000541233		TCGA	LD	CESC	TCGA-DS-A1OD-01A	VAMP1	chr12	6579696	-	CD27	chr12	6554590	+
In-frame	ENST00000336156	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000336156	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
Frame-shit	ENST00000391627	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
Frame-shit	ENST00000391627	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000251993	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000251993	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
intron-3CDS	ENST00000474515	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
intron-3CDS	ENST00000474515	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000443310	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000443310	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000496226	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000496226	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000492273	ENST00000357450		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000492273	ENST00000404354		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	KIAA0930	chr22	45607837	-	SMC1B	chr22	45741450	-
In-frame	ENST00000521689	ENST00000445593		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000521689	ENST00000521545		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000254898	ENST00000445593		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000254898	ENST00000521545		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000524308	ENST00000445593		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000524308	ENST00000521545		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
5UTR-3CDS	ENST00000522025	ENST00000445593		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
5UTR-3CDS	ENST00000522025	ENST00000521545		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000520016	ENST00000445593		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
In-frame	ENST00000520016	ENST00000521545		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
intron-3CDS	ENST00000518238	ENST00000445593		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
intron-3CDS	ENST00000518238	ENST00000521545		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	MATN2	chr8	98954127	+	LAPTM4B	chr8	98827556	+
5UTR-3CDS	ENST00000251849	ENST00000429711		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000251849	ENST00000396957		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000251849	ENST00000273223		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000251849	ENST00000435983		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000251849	ENST00000396953		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000442415	ENST00000429711		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000442415	ENST00000396957		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000442415	ENST00000273223		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000442415	ENST00000435983		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000442415	ENST00000396953		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
intron-3CDS	ENST00000534997	ENST00000429711		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
intron-3CDS	ENST00000534997	ENST00000396957		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
intron-3CDS	ENST00000534997	ENST00000273223		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
intron-3CDS	ENST00000534997	ENST00000435983		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
intron-3CDS	ENST00000534997	ENST00000396953		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000542177	ENST00000429711		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000542177	ENST00000396957		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000542177	ENST00000273223		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000542177	ENST00000435983		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
5UTR-3CDS	ENST00000542177	ENST00000396953		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	RAF1	chr3	12705312	-	RPL32	chr3	12877722	-
In-frame	ENST00000360586	ENST00000395425		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
In-frame	ENST00000360586	ENST00000247191		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
In-frame	ENST00000420358	ENST00000395425		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
In-frame	ENST00000420358	ENST00000247191		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
intron-3CDS	ENST00000359167	ENST00000395425		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
intron-3CDS	ENST00000359167	ENST00000247191		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
In-frame	ENST00000421192	ENST00000395425		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
In-frame	ENST00000421192	ENST00000247191		TCGA	LD	CESC	TCGA-DS-A3LQ-01A	WDHD1	chr14	55473998	-	DLGAP5	chr14	55617566	-
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	CESC	TCGA-DS-A7WF-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
Frame-shit	ENST00000358026	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000358026	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000344626	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000344626	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000429416	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000429416	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000541122	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000541122	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000589677	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000589677	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000444061	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000444061	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000590574	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000590574	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000413806	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000413806	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000450717	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
Frame-shit	ENST00000450717	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	LD	CESC	TCGA-DS-A7WF-01A	SMARCA4	chr19	11101999	+	CARM1	chr19	11032291	+
In-frame	ENST00000375687	ENST00000374980		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ASXL1	chr20	30956926	+	EIF2S2	chr20	32693351	-
In-frame	ENST00000542461	ENST00000374980		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ASXL1	chr20	30956926	+	EIF2S2	chr20	32693351	-
In-frame	ENST00000375689	ENST00000374980		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ASXL1	chr20	30956926	+	EIF2S2	chr20	32693351	-
In-frame	ENST00000306058	ENST00000374980		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ASXL1	chr20	30956926	+	EIF2S2	chr20	32693351	-
3UTR-3CDS	ENST00000470145	ENST00000374980		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ASXL1	chr20	30956926	+	EIF2S2	chr20	32693351	-
Frame-shit	ENST00000359653	ENST00000368842		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
Frame-shit	ENST00000359653	ENST00000368839		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
5CDS-intron	ENST00000359653	ENST00000392757		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
5CDS-3UTR	ENST00000359653	ENST00000482963		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
intron-3CDS	ENST00000471421	ENST00000368842		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
intron-3CDS	ENST00000471421	ENST00000368839		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
intron-intron	ENST00000471421	ENST00000392757		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
intron-3UTR	ENST00000471421	ENST00000482963		TCGA	LD	CESC	TCGA-DS-A7WH-01A	ZRANB1	chr10	126672257	+	LHPP	chr10	126301833	+
5CDS-5UTR	ENST00000271069	ENST00000257100		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000271069	ENST00000373648		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000271069	ENST00000360482		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000271069	ENST00000533231		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373672	ENST00000257100		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373672	ENST00000373648		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373672	ENST00000360482		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373672	ENST00000533231		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000461217	ENST00000257100		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000461217	ENST00000373648		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000461217	ENST00000360482		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000461217	ENST00000533231		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373668	ENST00000257100		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373668	ENST00000373648		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373668	ENST00000360482		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000373668	ENST00000533231		TCGA	LD	CESC	TCGA-EA-A1QS-01A	COL16A1	chr1	32155342	-	SPOCD1	chr1	32267306	-
Frame-shit	ENST00000289371	ENST00000308528		TCGA	LD	CESC	TCGA-EA-A1QS-01A	EIF5B	chr2	99954052	+	LYG1	chr2	99909103	-
Frame-shit	ENST00000289371	ENST00000409448		TCGA	LD	CESC	TCGA-EA-A1QS-01A	EIF5B	chr2	99954052	+	LYG1	chr2	99909103	-
Frame-shit	ENST00000327044	ENST00000379339		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
Frame-shit	ENST00000327044	ENST00000448924		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
Frame-shit	ENST00000327044	ENST00000294576		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
Frame-shit	ENST00000327044	ENST00000421241		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5CDS-5UTR	ENST00000327044	ENST00000482816		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5CDS-5UTR	ENST00000327044	ENST00000437760		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5CDS-5UTR	ENST00000327044	ENST00000379320		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5CDS-5UTR	ENST00000327044	ENST00000379319		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-3CDS	ENST00000487214	ENST00000379339		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-3CDS	ENST00000487214	ENST00000448924		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-3CDS	ENST00000487214	ENST00000294576		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-3CDS	ENST00000487214	ENST00000421241		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-5UTR	ENST00000487214	ENST00000482816		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-5UTR	ENST00000487214	ENST00000437760		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-5UTR	ENST00000487214	ENST00000379320		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
5UTR-5UTR	ENST00000487214	ENST00000379319		TCGA	LD	CESC	TCGA-EA-A1QS-01A	NOC2L	chr1	894595	-	C1orf159	chr1	1022977	-
intron-3CDS	ENST00000393799	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393799	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393799	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393799	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393799	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393799	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000393799	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000530427	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000530427	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000530427	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000530427	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000530427	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000530427	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000530427	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393800	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393800	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393800	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393800	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393800	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393800	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000393800	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000534534	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000534534	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000534534	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000534534	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000534534	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000534534	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000534534	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524845	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524845	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524845	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524845	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524845	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524845	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000524845	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265637	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265637	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265637	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265637	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265637	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265637	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000265637	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524904	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524904	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524904	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524904	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524904	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000524904	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000524904	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393801	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393801	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393801	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393801	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393801	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000393801	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000393801	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265636	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265636	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265636	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265636	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265636	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000265636	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000265636	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000529710	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000529710	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000529710	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000529710	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000529710	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000529710	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000529710	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000527403	ENST00000346672		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000527403	ENST00000360962		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000527403	ENST00000527634		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000527403	ENST00000540737		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000527403	ENST00000532565		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-3CDS	ENST00000527403	ENST00000525449		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
intron-intron	ENST00000527403	ENST00000527368		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PPP6R3	chr11	68272739	+	C11orf80	chr11	66583524	+
In-frame	ENST00000338368	ENST00000297423		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
In-frame	ENST00000338368	ENST00000518074		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
In-frame	ENST00000338368	ENST00000541342		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5CDS-3UTR	ENST00000338368	ENST00000521214		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000338368	ENST00000517693		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000338368	ENST00000518060		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
In-frame	ENST00000314191	ENST00000297423		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
In-frame	ENST00000314191	ENST00000518074		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
In-frame	ENST00000314191	ENST00000541342		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5CDS-3UTR	ENST00000314191	ENST00000521214		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000314191	ENST00000517693		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000314191	ENST00000518060		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000297423		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000518074		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000541342		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5UTR-3UTR	ENST00000523565	ENST00000521214		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5UTR-intron	ENST00000523565	ENST00000517693		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
5UTR-intron	ENST00000523565	ENST00000518060		TCGA	LD	CESC	TCGA-EA-A1QT-01A	PRKDC	chr8	48730011	-	SPIDR	chr8	48508373	+
In-frame	ENST00000598913	ENST00000299977		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5CDS-intron	ENST00000598913	ENST00000542451		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5CDS-intron	ENST00000598913	ENST00000592325		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
In-frame	ENST00000314471	ENST00000299977		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5CDS-intron	ENST00000314471	ENST00000542451		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5CDS-intron	ENST00000314471	ENST00000592325		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
3UTR-3CDS	ENST00000594204	ENST00000299977		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
3UTR-intron	ENST00000594204	ENST00000542451		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
3UTR-intron	ENST00000594204	ENST00000592325		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
In-frame	ENST00000596368	ENST00000299977		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5CDS-intron	ENST00000596368	ENST00000542451		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5CDS-intron	ENST00000596368	ENST00000592325		TCGA	LD	CESC	TCGA-EA-A3HR-01A	SAMD4B	chr19	39847729	+	SLFN5	chr17	33591202	+
5UTR-intron	ENST00000322366	ENST00000395169		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000359221		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000361569		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000395166		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000449047		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000395161		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000513839		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000395157		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000322366	ENST00000395160		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000395169		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000359221		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000361569		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000395166		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000449047		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000395161		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000513839		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000395157		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
5UTR-intron	ENST00000295888	ENST00000395160		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000395169		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000359221		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000361569		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000395166		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000449047		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000395161		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000513839		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000395157		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
intron-intron	ENST00000512267	ENST00000395160		TCGA	LD	CESC	TCGA-EA-A3HS-01A	WDFY3	chr4	85818064	-	MAPK10	chr4	87222013	-
Frame-shit	ENST00000260442	ENST00000261837		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
Frame-shit	ENST00000260442	ENST00000396335		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
Frame-shit	ENST00000260442	ENST00000358784		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
5CDS-intron	ENST00000260442	ENST00000559348		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
5CDS-intron	ENST00000260442	ENST00000560116		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
intron-3CDS	ENST00000561198	ENST00000261837		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
intron-3CDS	ENST00000561198	ENST00000396335		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
intron-3CDS	ENST00000561198	ENST00000358784		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
intron-intron	ENST00000561198	ENST00000559348		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
intron-intron	ENST00000561198	ENST00000560116		TCGA	LD	CESC	TCGA-EA-A3QD-01A	BCL2L10	chr15	52404435	-	GNB5	chr15	52446273	-
Frame-shit	ENST00000354300	ENST00000228827		TCGA	LD	CESC	TCGA-EA-A3QD-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110895439	-
Frame-shit	ENST00000354300	ENST00000543199		TCGA	LD	CESC	TCGA-EA-A3QD-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110895439	-
Frame-shit	ENST00000354300	ENST00000537466		TCGA	LD	CESC	TCGA-EA-A3QD-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110895439	-
5CDS-intron	ENST00000354300	ENST00000552180		TCGA	LD	CESC	TCGA-EA-A3QD-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110895439	-
Frame-shit	ENST00000257821	ENST00000361236		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
Frame-shit	ENST00000257821	ENST00000398136		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000257821	ENST00000532161		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000257821	ENST00000525577		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
Frame-shit	ENST00000323180	ENST00000361236		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
Frame-shit	ENST00000323180	ENST00000398136		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000323180	ENST00000532161		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000323180	ENST00000525577		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
Frame-shit	ENST00000418153	ENST00000361236		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
Frame-shit	ENST00000418153	ENST00000398136		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000418153	ENST00000532161		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
5CDS-5UTR	ENST00000418153	ENST00000525577		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
intron-3CDS	ENST00000527753	ENST00000361236		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
intron-3CDS	ENST00000527753	ENST00000398136		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
intron-5UTR	ENST00000527753	ENST00000532161		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
intron-5UTR	ENST00000527753	ENST00000525577		TCGA	LD	CESC	TCGA-EA-A411-01A	PHF21A	chr11	46098305	-	TMEM123	chr11	102272937	-
In-frame	ENST00000371108	ENST00000559935		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000371108	ENST00000559416		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000371108	ENST00000558813		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000371108	ENST00000331200		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000371108	ENST00000455976		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000371108	ENST00000559540		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
5CDS-intron	ENST00000371108	ENST00000561350		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000263440	ENST00000559935		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000263440	ENST00000559416		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000263440	ENST00000558813		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000263440	ENST00000331200		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000263440	ENST00000455976		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
In-frame	ENST00000263440	ENST00000559540		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
5CDS-intron	ENST00000263440	ENST00000561350		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-3CDS	ENST00000494765	ENST00000559935		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-3CDS	ENST00000494765	ENST00000559416		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-3CDS	ENST00000494765	ENST00000558813		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-3CDS	ENST00000494765	ENST00000331200		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-3CDS	ENST00000494765	ENST00000455976		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-3CDS	ENST00000494765	ENST00000559540		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
intron-intron	ENST00000494765	ENST00000561350		TCGA	LD	CESC	TCGA-EA-A44S-01A	ALG6	chr1	63872797	+	DUT	chr15	48626614	+
5CDS-intron	ENST00000383202	ENST00000484501		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000383202	ENST00000329582		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000383202	ENST00000309741		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000236698	ENST00000484501		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000236698	ENST00000329582		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000236698	ENST00000309741		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000434713	ENST00000484501		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000434713	ENST00000329582		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000434713	ENST00000309741		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
intron-intron	ENST00000480733	ENST00000484501		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
intron-intron	ENST00000480733	ENST00000329582		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
intron-3UTR	ENST00000480733	ENST00000309741		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000536929	ENST00000484501		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000536929	ENST00000329582		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000536929	ENST00000309741		TCGA	LD	CESC	TCGA-EA-A44S-01A	STAG1	chr3	136076562	-	IL20RB	chr3	136728955	+
In-frame	ENST00000427191	ENST00000395146		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000427191	ENST00000307808		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000427191	ENST00000544085		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-intron	ENST00000427191	ENST00000511996		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000436978	ENST00000395146		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000436978	ENST00000307808		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000436978	ENST00000544085		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-intron	ENST00000436978	ENST00000511996		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000502971	ENST00000395146		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000502971	ENST00000307808		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000502971	ENST00000544085		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-intron	ENST00000502971	ENST00000511996		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000411767	ENST00000395146		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000411767	ENST00000307808		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000411767	ENST00000544085		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-intron	ENST00000411767	ENST00000511996		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000316707	ENST00000395146		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000316707	ENST00000307808		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000316707	ENST00000544085		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-intron	ENST00000316707	ENST00000511996		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000511467	ENST00000395146		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
In-frame	ENST00000511467	ENST00000307808		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000511467	ENST00000544085		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-intron	ENST00000511467	ENST00000511996		TCGA	LD	CESC	TCGA-EA-A5ZD-01A	PTPN13	chr4	87610343	+	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000330978	ENST00000219150		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	BOLA2	chr16	29465338	-	CORO1A	chr16	30196529	+
5CDS-3UTR	ENST00000330978	ENST00000566619		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	BOLA2	chr16	29465338	-	CORO1A	chr16	30196529	+
5CDS-5UTR	ENST00000330978	ENST00000570045		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	BOLA2	chr16	29465338	-	CORO1A	chr16	30196529	+
5CDS-5UTR	ENST00000330978	ENST00000565497		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	BOLA2	chr16	29465338	-	CORO1A	chr16	30196529	+
5CDS-intron	ENST00000441802	ENST00000448662		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000431808		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000284776		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000437304		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000319471		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000449407		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000355634		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000441802	ENST00000393528		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000441802	ENST00000418609		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000441802	ENST00000498125		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000512347	ENST00000448662		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000431808		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000284776		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000437304		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000319471		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000449407		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000355634		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000512347	ENST00000393528		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000512347	ENST00000418609		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000512347	ENST00000498125		TCGA	LD	CESC	TCGA-EA-A5ZE-01A	FAT1	chr4	187524057	-	SORBS2	chr4	186696520	-
Frame-shit	ENST00000283943	ENST00000295190		TCGA	LD	CESC	TCGA-EA-A97N-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000389045	ENST00000295190		TCGA	LD	CESC	TCGA-EA-A97N-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000389044	ENST00000295190		TCGA	LD	CESC	TCGA-EA-A97N-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000543084	ENST00000295190		TCGA	LD	CESC	TCGA-EA-A97N-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000409677	ENST00000295190		TCGA	LD	CESC	TCGA-EA-A97N-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000295688	ENST00000361170		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000295688	ENST00000498755		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000368259	ENST00000361170		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000368259	ENST00000498755		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
In-frame	ENST00000368261	ENST00000361170		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000368261	ENST00000498755		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000472765	ENST00000361170		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000472765	ENST00000498755		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
intron-3CDS	ENST00000368256	ENST00000361170		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
intron-intron	ENST00000368256	ENST00000498755		TCGA	LD	CESC	TCGA-EK-A2H0-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
intron-3CDS	ENST00000458477	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000458477	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000458477	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000458477	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
Frame-shit	ENST00000228307	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000228307	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000228307	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000228307	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
Frame-shit	ENST00000424649	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000424649	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000424649	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000424649	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-3CDS	ENST00000397506	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000397506	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000397506	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000397506	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-3CDS	ENST00000536957	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000536957	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000536957	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000536957	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
Frame-shit	ENST00000267257	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000267257	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000267257	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
5CDS-intron	ENST00000267257	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-3CDS	ENST00000538144	ENST00000229340		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000538144	ENST00000432953		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000538144	ENST00000534951		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
intron-intron	ENST00000538144	ENST00000543364		TCGA	LD	CESC	TCGA-EK-A2H0-01A	PXN	chr12	120703420	-	RAB35	chr12	120546271	-
In-frame	ENST00000539229	ENST00000393958		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000539229	ENST00000393960		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000539229	ENST00000355677		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-5UTR	ENST00000539229	ENST00000524491		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000539229	ENST00000529047		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000539229	ENST00000393955		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000539229	ENST00000528224		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000316367	ENST00000393958		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000316367	ENST00000393960		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000316367	ENST00000355677		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-5UTR	ENST00000316367	ENST00000524491		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000316367	ENST00000529047		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000316367	ENST00000393955		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000316367	ENST00000528224		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000342456	ENST00000393958		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000342456	ENST00000393960		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000342456	ENST00000355677		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-5UTR	ENST00000342456	ENST00000524491		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000342456	ENST00000529047		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000342456	ENST00000393955		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000342456	ENST00000528224		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000007633	ENST00000393958		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000007633	ENST00000393960		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
In-frame	ENST00000007633	ENST00000355677		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-5UTR	ENST00000007633	ENST00000524491		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000007633	ENST00000529047		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000007633	ENST00000393955		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
5CDS-intron	ENST00000007633	ENST00000528224		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-3CDS	ENST00000434449	ENST00000393958		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-3CDS	ENST00000434449	ENST00000393960		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-3CDS	ENST00000434449	ENST00000355677		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-5UTR	ENST00000434449	ENST00000524491		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-intron	ENST00000434449	ENST00000529047		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-intron	ENST00000434449	ENST00000393955		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
3UTR-intron	ENST00000434449	ENST00000528224		TCGA	LD	CESC	TCGA-EK-A2IP-01A	ALDH3B1	chr11	67786724	+	PC	chr11	66639630	-
intron-5UTR	ENST00000593786	ENST00000538132		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000593786	ENST00000217426		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000593786	ENST00000468908		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000374796	ENST00000538132		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000374796	ENST00000217426		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000374796	ENST00000468908		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000359003	ENST00000538132		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000359003	ENST00000217426		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000359003	ENST00000468908		TCGA	LD	CESC	TCGA-EK-A2IR-01A	NCOA6	chr20	33356267	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000292123	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000292123	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000292123	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000292123	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000292123	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000592224	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000592224	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000592224	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000592224	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000592224	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
intron-5UTR	ENST00000586934	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
intron-5UTR	ENST00000586934	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
intron-5UTR	ENST00000586934	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
intron-intron	ENST00000586934	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
intron-intron	ENST00000586934	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000454510	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000454510	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000454510	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000454510	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000454510	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000433404	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000433404	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000433404	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000433404	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000433404	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000588852	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000588852	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000588852	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000588852	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000588852	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000538656	ENST00000585605		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000538656	ENST00000587950		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-5UTR	ENST00000538656	ENST00000309324		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000538656	ENST00000590389		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
5CDS-intron	ENST00000538656	ENST00000587589		TCGA	LD	CESC	TCGA-EK-A2PG-01A	SAFB	chr19	5653431	+	C19orf70	chr19	5678659	-
Frame-shit	ENST00000512701	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000512701	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000355694	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000355694	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000380850	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000380850	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000297615	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000297615	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
intron-3CDS	ENST00000507285	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
intron-intron	ENST00000507285	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
intron-3CDS	ENST00000507993	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
intron-intron	ENST00000507993	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
Frame-shit	ENST00000541445	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
5CDS-intron	ENST00000541445	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
intron-3CDS	ENST00000582994	ENST00000319264		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
intron-intron	ENST00000582994	ENST00000489107		TCGA	LD	CESC	TCGA-EK-A2PG-01A	TTC39B	chr9	15307082	-	LURAP1L	chr9	12821385	+
5UTR-5UTR	ENST00000571102	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
5UTR-5UTR	ENST00000571102	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
5UTR-5UTR	ENST00000571102	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
5UTR-intron	ENST00000571102	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000431515	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000431515	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000431515	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-intron	ENST00000431515	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000440027	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000440027	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000440027	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-intron	ENST00000440027	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000262300	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000262300	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000262300	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-intron	ENST00000262300	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000574385	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000574385	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000574385	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-intron	ENST00000574385	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000574730	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000574730	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000574730	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-intron	ENST00000574730	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000573944	ENST00000253928		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000573944	ENST00000399667		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-5UTR	ENST00000573944	ENST00000416288		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
intron-intron	ENST00000573944	ENST00000570752		TCGA	LD	CESC	TCGA-EK-A2PI-01A	PKMYT1	chr16	3019889	-	FLYWCH1	chr16	2964177	+
In-frame	ENST00000248041	ENST00000269878		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
In-frame	ENST00000248041	ENST00000379859		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000248041	ENST00000541493		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
Frame-shit	ENST00000326742	ENST00000269878		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
Frame-shit	ENST00000326742	ENST00000379859		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000326742	ENST00000541493		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
Frame-shit	ENST00000402119	ENST00000269878		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
Frame-shit	ENST00000402119	ENST00000379859		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000402119	ENST00000541493		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000591841	ENST00000269878		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000591841	ENST00000379859		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
intron-5UTR	ENST00000591841	ENST00000541493		TCGA	LD	CESC	TCGA-EK-A2PM-01A	CYP4F11	chr19	16045021	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000384891	ENST00000338970		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MIR205HG	chr1	209605674	+	RPL14	chr3	40503560	+
intron-3CDS	ENST00000384891	ENST00000396203		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MIR205HG	chr1	209605674	+	RPL14	chr3	40503560	+
intron-3UTR	ENST00000384891	ENST00000416518		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MIR205HG	chr1	209605674	+	RPL14	chr3	40503560	+
intron-intron	ENST00000384891	ENST00000461368		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MIR205HG	chr1	209605674	+	RPL14	chr3	40503560	+
Frame-shit	ENST00000396324	ENST00000326799		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000396324	ENST00000376016		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000396324	ENST00000375972		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000396324	ENST00000463270		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000396324	ENST00000477432		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000452625	ENST00000326799		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000452625	ENST00000376016		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000452625	ENST00000375972		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000452625	ENST00000463270		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000452625	ENST00000477432		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000576790	ENST00000326799		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000576790	ENST00000376016		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000576790	ENST00000375972		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000576790	ENST00000463270		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000576790	ENST00000477432		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000300036	ENST00000326799		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000300036	ENST00000376016		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
Frame-shit	ENST00000300036	ENST00000375972		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000300036	ENST00000463270		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
5CDS-intron	ENST00000300036	ENST00000477432		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
intron-3CDS	ENST00000573908	ENST00000326799		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
intron-3CDS	ENST00000573908	ENST00000376016		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
intron-3CDS	ENST00000573908	ENST00000375972		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
intron-intron	ENST00000573908	ENST00000463270		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
intron-intron	ENST00000573908	ENST00000477432		TCGA	LD	CESC	TCGA-EK-A2PM-01A	MYH11	chr16	15820705	-	YME1L1	chr10	27437969	-
In-frame	ENST00000264156	ENST00000264158		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
In-frame	ENST00000264156	ENST00000539493		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
In-frame	ENST00000264156	ENST00000442034		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5CDS-3UTR	ENST00000264156	ENST00000487003		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5CDS-intron	ENST00000264156	ENST00000425393		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5UTR-3CDS	ENST00000492091	ENST00000264158		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5UTR-3CDS	ENST00000492091	ENST00000539493		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5UTR-3CDS	ENST00000492091	ENST00000442034		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5UTR-3UTR	ENST00000492091	ENST00000487003		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5UTR-intron	ENST00000492091	ENST00000425393		TCGA	LD	CESC	TCGA-EK-A2R7-01A	MCM6	chr2	136622583	-	RAB3GAP1	chr2	135887565	+
5CDS-intron	ENST00000232458	ENST00000483846		TCGA	LD	CESC	TCGA-EK-A2R9-01A	ECT2	chr3	172474955	+	EGFEM1P	chr3	168031859	+
5CDS-intron	ENST00000392692	ENST00000483846		TCGA	LD	CESC	TCGA-EK-A2R9-01A	ECT2	chr3	172474955	+	EGFEM1P	chr3	168031859	+
5CDS-intron	ENST00000427830	ENST00000483846		TCGA	LD	CESC	TCGA-EK-A2R9-01A	ECT2	chr3	172474955	+	EGFEM1P	chr3	168031859	+
5CDS-intron	ENST00000417960	ENST00000483846		TCGA	LD	CESC	TCGA-EK-A2R9-01A	ECT2	chr3	172474955	+	EGFEM1P	chr3	168031859	+
5CDS-intron	ENST00000441497	ENST00000483846		TCGA	LD	CESC	TCGA-EK-A2R9-01A	ECT2	chr3	172474955	+	EGFEM1P	chr3	168031859	+
5CDS-intron	ENST00000540509	ENST00000483846		TCGA	LD	CESC	TCGA-EK-A2R9-01A	ECT2	chr3	172474955	+	EGFEM1P	chr3	168031859	+
5UTR-3CDS	ENST00000295822	ENST00000295797		TCGA	LD	CESC	TCGA-EK-A2R9-01A	EIF5A2	chr3	170626332	-	PRKCI	chr3	170011171	+
5UTR-3CDS	ENST00000460117	ENST00000295797		TCGA	LD	CESC	TCGA-EK-A2R9-01A	EIF5A2	chr3	170626332	-	PRKCI	chr3	170011171	+
5UTR-3CDS	ENST00000487522	ENST00000295797		TCGA	LD	CESC	TCGA-EK-A2R9-01A	EIF5A2	chr3	170626332	-	PRKCI	chr3	170011171	+
5UTR-3CDS	ENST00000474096	ENST00000295797		TCGA	LD	CESC	TCGA-EK-A2R9-01A	EIF5A2	chr3	170626332	-	PRKCI	chr3	170011171	+
5CDS-intron	ENST00000395833	ENST00000534312		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000395850		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000533403		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000351554		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000415002		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000445143		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000426650		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000437761		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000527577		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000395833	ENST00000528700		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-intron	ENST00000257818	ENST00000534312		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000395850		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000533403		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000351554		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000415002		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000445143		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000426650		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000437761		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000527577		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
5CDS-5UTR	ENST00000257818	ENST00000528700		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-intron	ENST00000493667	ENST00000534312		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000395850		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000533403		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000351554		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000415002		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000445143		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000426650		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000437761		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000527577		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-5UTR	ENST00000493667	ENST00000528700		TCGA	LD	CESC	TCGA-EK-A2RA-01A	LMO2	chr11	33886148	-	CD59	chr11	33744009	-
intron-3CDS	ENST00000384891	ENST00000338970		TCGA	LD	CESC	TCGA-EK-A2RC-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
intron-3CDS	ENST00000384891	ENST00000396203		TCGA	LD	CESC	TCGA-EK-A2RC-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
intron-3UTR	ENST00000384891	ENST00000416518		TCGA	LD	CESC	TCGA-EK-A2RC-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
intron-intron	ENST00000384891	ENST00000461368		TCGA	LD	CESC	TCGA-EK-A2RC-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
In-frame	ENST00000449105	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000449105	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000449105	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000449105	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000449105	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409636	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409636	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409636	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409636	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000409636	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000378915	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000378915	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000378915	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000378915	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000378915	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000608859	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000608859	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000608859	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000608859	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000608859	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409328	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409328	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409328	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000409328	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000409328	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000358367	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000358367	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000358367	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000358367	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000358367	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000410076	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000410076	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000410076	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
In-frame	ENST00000410076	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
5CDS-3UTR	ENST00000410076	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
intron-3CDS	ENST00000498516	ENST00000575270		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
intron-3CDS	ENST00000498516	ENST00000349223		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
intron-3CDS	ENST00000498516	ENST00000329524		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
intron-3CDS	ENST00000498516	ENST00000346183		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
intron-3UTR	ENST00000498516	ENST00000535127		TCGA	LD	CESC	TCGA-EK-A2RJ-01A	HNRNPLL	chr2	38812786	-	NFATC3	chr16	68191772	+
intron-3CDS	ENST00000545844	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000545844	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000545844	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000567887	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000567887	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000567887	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000372915	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000372915	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000372915	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000361689	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000361689	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000361689	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000539005	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000539005	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000539005	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000317713	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000317713	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000317713	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000564288	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000564288	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000564288	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000289893	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000289893	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000289893	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000536367	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000536367	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000536367	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000484793	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000484793	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000484793	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000602421	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000602421	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000602421	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000476350	ENST00000432648		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-3CDS	ENST00000476350	ENST00000446189		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000476350	ENST00000372984		TCGA	LD	CESC	TCGA-EK-A2RL-01A	MACF1	chr1	39571388	+	AKIRIN1	chr1	39463842	+
intron-intron	ENST00000456518	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000456518	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000456518	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000456518	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000456518	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000397174	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000397174	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000397174	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000397174	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000397174	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000402904	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000402904	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000402904	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000402904	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000402904	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000361191	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000361191	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000361191	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000361191	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000361191	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000397171	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000397171	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000397171	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000397171	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000397171	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000361705	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000361705	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000361705	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000361705	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000361705	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000326197	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000326197	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000326197	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000326197	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000326197	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000372595	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000372595	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000372595	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000372595	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000372595	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000337495	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000337495	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000337495	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000337495	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000337495	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000372596	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000372596	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000372596	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000372596	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000372596	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000372597	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000372597	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000372597	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000372597	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000372597	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000472037	ENST00000467129		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000472037	ENST00000381808		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000472037	ENST00000381812		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000472037	ENST00000339987		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000472037	ENST00000360779		TCGA	LD	CESC	TCGA-EK-A2RM-01A	SCMH1	chr1	41707731	-	SDCBP2	chr20	1301079	-
intron-3CDS	ENST00000263377	ENST00000263388		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15273373	-
intron-3CDS	ENST00000371835	ENST00000263388		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15273373	-
5UTR-3CDS	ENST00000360016	ENST00000263388		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15273373	-
intron-3CDS	ENST00000602230	ENST00000263388		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15273373	-
Frame-shit	ENST00000262291	ENST00000346141		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000262291	ENST00000325752		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000262291	ENST00000340993		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000262291	ENST00000394239		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000262291	ENST00000592426		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000262291	ENST00000376094		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000262291	ENST00000539018		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000262291	ENST00000591611		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000537567	ENST00000346141		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000537567	ENST00000325752		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000537567	ENST00000340993		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000537567	ENST00000394239		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000537567	ENST00000592426		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000537567	ENST00000376094		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000537567	ENST00000539018		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000537567	ENST00000591611		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000539763	ENST00000346141		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000539763	ENST00000325752		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000539763	ENST00000340993		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000539763	ENST00000394239		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000539763	ENST00000592426		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000539763	ENST00000376094		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000539763	ENST00000539018		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000539763	ENST00000591611		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000536180	ENST00000346141		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000536180	ENST00000325752		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000536180	ENST00000340993		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000536180	ENST00000394239		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000536180	ENST00000592426		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000536180	ENST00000376094		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000536180	ENST00000539018		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000536180	ENST00000591611		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000545362	ENST00000346141		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000545362	ENST00000325752		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000545362	ENST00000340993		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000545362	ENST00000394239		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
Frame-shit	ENST00000545362	ENST00000592426		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000545362	ENST00000376094		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000545362	ENST00000539018		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
5CDS-intron	ENST00000545362	ENST00000591611		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-3CDS	ENST00000588617	ENST00000346141		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-3CDS	ENST00000588617	ENST00000325752		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-3CDS	ENST00000588617	ENST00000340993		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-3CDS	ENST00000588617	ENST00000394239		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-3CDS	ENST00000588617	ENST00000592426		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-intron	ENST00000588617	ENST00000376094		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-intron	ENST00000588617	ENST00000539018		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
intron-intron	ENST00000588617	ENST00000591611		TCGA	LD	CESC	TCGA-EK-A3GJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57944110	-
In-frame	ENST00000261590	ENST00000237014		TCGA	LD	CESC	TCGA-EK-A3GM-01A	DSG2	chr18	29078258	+	TTR	chr18	29172858	+
In-frame	ENST00000585206	ENST00000237014		TCGA	LD	CESC	TCGA-EK-A3GM-01A	DSG2	chr18	29078258	+	TTR	chr18	29172858	+
Frame-shit	ENST00000280285	ENST00000382275		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000280285	ENST00000507958		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000280285	ENST00000502796		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000280285	ENST00000511273		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000280285	ENST00000274170		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000280285	ENST00000506372		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
5CDS-intron	ENST00000280285	ENST00000510297		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000382142	ENST00000382275		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000382142	ENST00000507958		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000382142	ENST00000502796		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000382142	ENST00000511273		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000382142	ENST00000274170		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000382142	ENST00000506372		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
5CDS-intron	ENST00000382142	ENST00000510297		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000264934	ENST00000382275		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000264934	ENST00000507958		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000264934	ENST00000502796		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000264934	ENST00000511273		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000264934	ENST00000274170		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
Frame-shit	ENST00000264934	ENST00000506372		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
5CDS-intron	ENST00000264934	ENST00000510297		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-3CDS	ENST00000510216	ENST00000382275		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-3CDS	ENST00000510216	ENST00000507958		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-3CDS	ENST00000510216	ENST00000502796		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-3CDS	ENST00000510216	ENST00000511273		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-3CDS	ENST00000510216	ENST00000274170		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-3CDS	ENST00000510216	ENST00000506372		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-intron	ENST00000510216	ENST00000510297		TCGA	LD	CESC	TCGA-EK-A3GM-01A	MTMR12	chr5	32239107	-	CDH18	chr5	19520887	-
intron-5UTR	ENST00000367187	ENST00000367194		TCGA	LD	CESC	TCGA-EK-A3GN-01A	PIK3C2B	chr1	204463484	-	KISS1	chr1	204162042	-
intron-5UTR	ENST00000424712	ENST00000367194		TCGA	LD	CESC	TCGA-EK-A3GN-01A	PIK3C2B	chr1	204463484	-	KISS1	chr1	204162042	-
intron-5UTR	ENST00000496872	ENST00000367194		TCGA	LD	CESC	TCGA-EK-A3GN-01A	PIK3C2B	chr1	204463484	-	KISS1	chr1	204162042	-
5CDS-3UTR	ENST00000247843	ENST00000552554		TCGA	LD	CESC	TCGA-EK-A3GN-01A	YEATS4	chr12	69764755	+	PGAM1P5	chr12	96043104	+
5CDS-3UTR	ENST00000548020	ENST00000552554		TCGA	LD	CESC	TCGA-EK-A3GN-01A	YEATS4	chr12	69764755	+	PGAM1P5	chr12	96043104	+
In-frame	ENST00000209929	ENST00000367759		TCGA	LD	CESC	TCGA-FU-A23L-01A	FMO2	chr1	171174773	+	MROH9	chr1	171031273	+
5CDS-intron	ENST00000209929	ENST00000367758		TCGA	LD	CESC	TCGA-FU-A23L-01A	FMO2	chr1	171174773	+	MROH9	chr1	171031273	+
In-frame	ENST00000441535	ENST00000367759		TCGA	LD	CESC	TCGA-FU-A23L-01A	FMO2	chr1	171174773	+	MROH9	chr1	171031273	+
5CDS-intron	ENST00000441535	ENST00000367758		TCGA	LD	CESC	TCGA-FU-A23L-01A	FMO2	chr1	171174773	+	MROH9	chr1	171031273	+
3UTR-3CDS	ENST00000529935	ENST00000367759		TCGA	LD	CESC	TCGA-FU-A23L-01A	FMO2	chr1	171174773	+	MROH9	chr1	171031273	+
3UTR-intron	ENST00000529935	ENST00000367758		TCGA	LD	CESC	TCGA-FU-A23L-01A	FMO2	chr1	171174773	+	MROH9	chr1	171031273	+
Frame-shit	ENST00000296585	ENST00000503787		TCGA	LD	CESC	TCGA-FU-A2QG-01A	ITGA2	chr5	52285362	+	GPX8	chr5	54456158	+
5CDS-3UTR	ENST00000296585	ENST00000506123		TCGA	LD	CESC	TCGA-FU-A2QG-01A	ITGA2	chr5	52285362	+	GPX8	chr5	54456158	+
5CDS-3UTR	ENST00000296585	ENST00000296734		TCGA	LD	CESC	TCGA-FU-A2QG-01A	ITGA2	chr5	52285362	+	GPX8	chr5	54456158	+
5CDS-intron	ENST00000296585	ENST00000515370		TCGA	LD	CESC	TCGA-FU-A2QG-01A	ITGA2	chr5	52285362	+	GPX8	chr5	54456158	+
5UTR-3CDS	ENST00000378330	ENST00000301727		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
5UTR-3CDS	ENST00000378330	ENST00000565090		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
5UTR-3CDS	ENST00000378330	ENST00000564139		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
5UTR-3CDS	ENST00000301030	ENST00000301727		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
5UTR-3CDS	ENST00000301030	ENST00000565090		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
5UTR-3CDS	ENST00000301030	ENST00000564139		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
intron-3CDS	ENST00000563291	ENST00000301727		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
intron-3CDS	ENST00000563291	ENST00000565090		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
intron-3CDS	ENST00000563291	ENST00000564139		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
intron-3CDS	ENST00000567736	ENST00000301727		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
intron-3CDS	ENST00000567736	ENST00000565090		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
intron-3CDS	ENST00000567736	ENST00000564139		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	ANKRD11	chr16	89556653	-	E4F1	chr16	2278373	+
5CDS-5UTR	ENST00000342085	ENST00000590891		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000342085	ENST00000590965		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000342085	ENST00000591401		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000342085	ENST00000283474		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000342085	ENST00000591897		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000342085	ENST00000587615		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000342085	ENST00000587649		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000441549	ENST00000590891		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000441549	ENST00000590965		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000441549	ENST00000591401		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000441549	ENST00000283474		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000441549	ENST00000591897		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000441549	ENST00000587615		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000441549	ENST00000587649		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000268673	ENST00000590891		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000268673	ENST00000590965		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000268673	ENST00000591401		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000268673	ENST00000283474		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000268673	ENST00000591897		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000268673	ENST00000587615		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000268673	ENST00000587649		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000354836	ENST00000590891		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000354836	ENST00000590965		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000354836	ENST00000591401		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000354836	ENST00000283474		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000354836	ENST00000591897		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000354836	ENST00000587615		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-5UTR	ENST00000354836	ENST00000587649		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000389224	ENST00000590891		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000389224	ENST00000590965		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-intron	ENST00000389224	ENST00000591401		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-intron	ENST00000389224	ENST00000283474		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000389224	ENST00000591897		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000389224	ENST00000587615		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000389224	ENST00000587649		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000471311	ENST00000590891		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000471311	ENST00000590965		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-intron	ENST00000471311	ENST00000591401		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-intron	ENST00000471311	ENST00000283474		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000471311	ENST00000591897		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000471311	ENST00000587615		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
intron-5UTR	ENST00000471311	ENST00000587649		TCGA	LD	CESC	TCGA-FU-A3TQ-01A	PDPK1	chr16	2588137	+	UBALD1	chr16	4660556	-
5CDS-intron	ENST00000317987	ENST00000465301		TCGA	LD	CESC	TCGA-FU-A3TX-01A	FDCSP	chr4	71096968	+	RGAG1	chrX	109662230	+
5CDS-intron	ENST00000317987	ENST00000540313		TCGA	LD	CESC	TCGA-FU-A3TX-01A	FDCSP	chr4	71096968	+	RGAG1	chrX	109662230	+
5CDS-intron	ENST00000400556	ENST00000328827		TCGA	LD	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80062188	-
5CDS-5UTR	ENST00000400556	ENST00000547571		TCGA	LD	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80062188	-
5CDS-intron	ENST00000400555	ENST00000328827		TCGA	LD	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80062188	-
5CDS-5UTR	ENST00000400555	ENST00000547571		TCGA	LD	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80062188	-
intron-intron	ENST00000580583	ENST00000328827		TCGA	LD	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80062188	-
intron-5UTR	ENST00000580583	ENST00000547571		TCGA	LD	CESC	TCGA-FU-A3TX-01A	PPP4R1	chr18	9570155	-	PAWR	chr12	80062188	-
In-frame	ENST00000409790	ENST00000572173		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409790	ENST00000572992		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409790	ENST00000381820		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409790	ENST00000312499		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409790	ENST00000576027		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
In-frame	ENST00000409552	ENST00000572173		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409552	ENST00000572992		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409552	ENST00000381820		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409552	ENST00000312499		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000409552	ENST00000576027		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
intron-3CDS	ENST00000465491	ENST00000572173		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
intron-intron	ENST00000465491	ENST00000572992		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
intron-intron	ENST00000465491	ENST00000381820		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
intron-intron	ENST00000465491	ENST00000312499		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
intron-intron	ENST00000465491	ENST00000576027		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5UTR-3CDS	ENST00000381822	ENST00000572173		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5UTR-intron	ENST00000381822	ENST00000572992		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5UTR-intron	ENST00000381822	ENST00000381820		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5UTR-intron	ENST00000381822	ENST00000312499		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5UTR-intron	ENST00000381822	ENST00000576027		TCGA	LD	CESC	TCGA-FU-A40J-01A	CLEC16A	chr16	11220003	+	RMI2	chr16	11444499	+
5CDS-intron	ENST00000518525	ENST00000518527		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000518525	ENST00000377360		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000518525	ENST00000328939		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000518525	ENST00000390656		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000518525	ENST00000520740		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000518525	ENST00000434108		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000518525	ENST00000411494		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000518527		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000377360		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000328939		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265294	ENST00000390656		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265294	ENST00000520740		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265294	ENST00000434108		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265294	ENST00000411494		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000518527		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000377360		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000328939		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519385	ENST00000390656		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519385	ENST00000520740		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519385	ENST00000434108		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519385	ENST00000411494		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000518527		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000377360		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000328939		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000519598	ENST00000390656		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519598	ENST00000520740		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519598	ENST00000434108		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000519598	ENST00000411494		TCGA	LD	CESC	TCGA-FU-A40J-01A	GABRP	chr5	170232857	+	KCNIP1	chr5	170145762	+
Frame-shit	ENST00000331134	ENST00000374741		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5CDS-5UTR	ENST00000331134	ENST00000573786		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5CDS-3UTR	ENST00000331134	ENST00000571503		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
Frame-shit	ENST00000374747	ENST00000374741		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5CDS-5UTR	ENST00000374747	ENST00000573786		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5CDS-3UTR	ENST00000374747	ENST00000571503		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5UTR-3CDS	ENST00000539314	ENST00000374741		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5UTR-5UTR	ENST00000539314	ENST00000573786		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5UTR-3UTR	ENST00000539314	ENST00000571503		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-3CDS	ENST00000572760	ENST00000374741		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-5UTR	ENST00000572760	ENST00000573786		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-3UTR	ENST00000572760	ENST00000571503		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-3CDS	ENST00000573876	ENST00000374741		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-5UTR	ENST00000573876	ENST00000573786		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-3UTR	ENST00000573876	ENST00000571503		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-3CDS	ENST00000574344	ENST00000374741		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-5UTR	ENST00000574344	ENST00000573786		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
intron-3UTR	ENST00000574344	ENST00000571503		TCGA	LD	CESC	TCGA-FU-A5XV-01A	NPLOC4	chr17	79596751	-	OXLD1	chr17	79632614	-
5CDS-5UTR	ENST00000245407	ENST00000378823		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
5CDS-5UTR	ENST00000245407	ENST00000265335		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
5CDS-intron	ENST00000245407	ENST00000487596		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
5CDS-5UTR	ENST00000435065	ENST00000378823		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
5CDS-5UTR	ENST00000435065	ENST00000265335		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
5CDS-intron	ENST00000435065	ENST00000487596		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
intron-5UTR	ENST00000479605	ENST00000378823		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
intron-5UTR	ENST00000479605	ENST00000265335		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
intron-intron	ENST00000479605	ENST00000487596		TCGA	LD	CESC	TCGA-FU-A5XV-01A	SLC22A5	chr5	131706057	+	RAD50	chr5	131894976	+
intron-3CDS	ENST00000541285	ENST00000268719		TCGA	LD	CESC	TCGA-HM-A6W2-01A	ALKBH5	chr17	18088327	+	GID4	chr17	17962182	+
intron-intron	ENST00000541285	ENST00000376345		TCGA	LD	CESC	TCGA-HM-A6W2-01A	ALKBH5	chr17	18088327	+	GID4	chr17	17962182	+
intron-intron	ENST00000541285	ENST00000579871		TCGA	LD	CESC	TCGA-HM-A6W2-01A	ALKBH5	chr17	18088327	+	GID4	chr17	17962182	+
Frame-shit	ENST00000399138	ENST00000268719		TCGA	LD	CESC	TCGA-HM-A6W2-01A	ALKBH5	chr17	18088327	+	GID4	chr17	17962182	+
5CDS-intron	ENST00000399138	ENST00000376345		TCGA	LD	CESC	TCGA-HM-A6W2-01A	ALKBH5	chr17	18088327	+	GID4	chr17	17962182	+
5CDS-intron	ENST00000399138	ENST00000579871		TCGA	LD	CESC	TCGA-HM-A6W2-01A	ALKBH5	chr17	18088327	+	GID4	chr17	17962182	+
In-frame	ENST00000392568	ENST00000546474		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
In-frame	ENST00000392568	ENST00000327359		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
In-frame	ENST00000392568	ENST00000440513		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
In-frame	ENST00000392568	ENST00000392557		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
Frame-shit	ENST00000392568	ENST00000379937		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
Frame-shit	ENST00000392568	ENST00000547530		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
Frame-shit	ENST00000392568	ENST00000446501		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
5CDS-intron	ENST00000392568	ENST00000379932		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
5CDS-intron	ENST00000392568	ENST00000551787		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
5CDS-intron	ENST00000392568	ENST00000549044		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
5CDS-intron	ENST00000392568	ENST00000548421		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000546474		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000327359		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000440513		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000392557		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000379937		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000547530		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-3CDS	ENST00000550912	ENST00000446501		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-intron	ENST00000550912	ENST00000379932		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-intron	ENST00000550912	ENST00000551787		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-intron	ENST00000550912	ENST00000549044		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
intron-intron	ENST00000550912	ENST00000548421		TCGA	LD	CESC	TCGA-HM-A6W2-01A	NUDT14	chr14	105647466	-	BRF1	chr14	105676925	-
Frame-shit	ENST00000443326	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443326	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443326	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443326	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443326	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443326	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000414585	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000414585	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000414585	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000414585	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000414585	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000540643	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000540643	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000540643	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000540643	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000540643	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000432498	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000432498	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000432498	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000432498	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000432498	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000443011	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443011	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443011	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443011	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000443011	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400289	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400289	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400289	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400289	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400289	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
Frame-shit	ENST00000400288	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400288	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400288	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400288	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
5CDS-intron	ENST00000400288	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000535622		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000400246		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000266091		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000382105		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000400249		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000382112		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000382111		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-3CDS	ENST00000474741	ENST00000400248		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000474741	ENST00000494060		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000474741	ENST00000536766		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000474741	ENST00000400242		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
3UTR-intron	ENST00000474741	ENST00000539165		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SFI1	chr22	32014212	+	DEPDC5	chr22	32229901	+
In-frame	ENST00000268989	ENST00000344595		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2241039	+	SRR	chr17	2224600	+
5CDS-intron	ENST00000268989	ENST00000576848		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2241039	+	SRR	chr17	2224600	+
In-frame	ENST00000426855	ENST00000344595		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2241039	+	SRR	chr17	2224600	+
5CDS-intron	ENST00000426855	ENST00000576848		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2241039	+	SRR	chr17	2224600	+
In-frame	ENST00000574563	ENST00000344595		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2241039	+	SRR	chr17	2224600	+
5CDS-intron	ENST00000574563	ENST00000576848		TCGA	LD	CESC	TCGA-HM-A6W2-01A	SGSM2	chr17	2241039	+	SRR	chr17	2224600	+
Frame-shit	ENST00000368761	ENST00000368802		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000368761	ENST00000368805		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000368761	ENST00000435970		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000368761	ENST00000358835		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5CDS-intron	ENST00000368761	ENST00000462119		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000359831	ENST00000368802		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000359831	ENST00000368805		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000359831	ENST00000435970		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
Frame-shit	ENST00000359831	ENST00000358835		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5CDS-intron	ENST00000359831	ENST00000462119		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5UTR-3CDS	ENST00000392556	ENST00000368802		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5UTR-3CDS	ENST00000392556	ENST00000368805		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5UTR-3CDS	ENST00000392556	ENST00000435970		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5UTR-3CDS	ENST00000392556	ENST00000358835		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5UTR-intron	ENST00000392556	ENST00000462119		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
In-frame	ENST00000340026	ENST00000368802		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
In-frame	ENST00000340026	ENST00000368805		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
In-frame	ENST00000340026	ENST00000435970		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
In-frame	ENST00000340026	ENST00000358835		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5CDS-intron	ENST00000340026	ENST00000462119		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368731	ENST00000368802		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368731	ENST00000368805		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368731	ENST00000435970		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368731	ENST00000358835		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-intron	ENST00000368731	ENST00000462119		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368735	ENST00000368802		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368735	ENST00000368805		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368735	ENST00000435970		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-3CDS	ENST00000368735	ENST00000358835		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
intron-intron	ENST00000368735	ENST00000462119		TCGA	LD	CESC	TCGA-HM-A6W2-01A	TRAF3IP2	chr6	111901400	-	REV3L	chr6	111654570	-
5CDS-intron	ENST00000558401	ENST00000560775		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000558401	ENST00000434130		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000558401	ENST00000560780		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000558401	ENST00000558573		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-intron	ENST00000559916	ENST00000560775		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000559916	ENST00000434130		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000559916	ENST00000560780		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000559916	ENST00000558573		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-intron	ENST00000544417	ENST00000560775		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000544417	ENST00000434130		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000544417	ENST00000560780		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000544417	ENST00000558573		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
intron-intron	ENST00000559220	ENST00000560775		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
intron-5UTR	ENST00000559220	ENST00000434130		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
intron-5UTR	ENST00000559220	ENST00000560780		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
intron-5UTR	ENST00000559220	ENST00000558573		TCGA	LD	CESC	TCGA-IR-A3LA-01A	B2M	chr15	45003811	+	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000540367	ENST00000393946		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000540367	ENST00000525457		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000540367	ENST00000527043		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000540367	ENST00000526281		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-5UTR	ENST00000376618	ENST00000393946		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000376618	ENST00000525457		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000376618	ENST00000527043		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000376618	ENST00000526281		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-5UTR	ENST00000265641	ENST00000393946		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000265641	ENST00000525457		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000265641	ENST00000527043		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000265641	ENST00000526281		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-5UTR	ENST00000539743	ENST00000393946		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000539743	ENST00000525457		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000539743	ENST00000527043		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000539743	ENST00000526281		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
intron-5UTR	ENST00000537756	ENST00000393946		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
intron-intron	ENST00000537756	ENST00000525457		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
intron-intron	ENST00000537756	ENST00000527043		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
intron-intron	ENST00000537756	ENST00000526281		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-5UTR	ENST00000538994	ENST00000393946		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000538994	ENST00000525457		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000538994	ENST00000527043		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5CDS-intron	ENST00000538994	ENST00000526281		TCGA	LD	CESC	TCGA-IR-A3LA-01A	CPT1A	chr11	68560783	-	SYT12	chr11	66789340	+
5UTR-3CDS	ENST00000585548	ENST00000222214		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
5UTR-3CDS	ENST00000585548	ENST00000591470		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
5UTR-3CDS	ENST00000585548	ENST00000457854		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
5UTR-3CDS	ENST00000585548	ENST00000422947		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
5UTR-intron	ENST00000585548	ENST00000588242		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
intron-3CDS	ENST00000317060	ENST00000222214		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
intron-3CDS	ENST00000317060	ENST00000591470		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
intron-3CDS	ENST00000317060	ENST00000457854		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
intron-3CDS	ENST00000317060	ENST00000422947		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
intron-intron	ENST00000317060	ENST00000588242		TCGA	LD	CESC	TCGA-IR-A3LA-01A	DAND5	chr19	13076007	+	GCDH	chr19	13007724	+
5CDS-5UTR	ENST00000281928	ENST00000299732		TCGA	LD	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113646064	-
5CDS-5UTR	ENST00000281928	ENST00000416617		TCGA	LD	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113646064	-
5CDS-5UTR	ENST00000281928	ENST00000546692		TCGA	LD	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113646064	-
5UTR-5UTR	ENST00000551197	ENST00000299732		TCGA	LD	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113646064	-
5UTR-5UTR	ENST00000551197	ENST00000416617		TCGA	LD	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113646064	-
5UTR-5UTR	ENST00000551197	ENST00000546692		TCGA	LD	CESC	TCGA-IR-A3LB-01A	MED13L	chr12	116675273	-	IQCD	chr12	113646064	-
In-frame	ENST00000354293	ENST00000316763		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000354293	ENST00000377011		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000354293	ENST00000599538		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000354293	ENST00000443401		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000354293	ENST00000601341		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000354293	ENST00000594948		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000601912		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000594092		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000593919		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000424804		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000600199	ENST00000316763		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000600199	ENST00000377011		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000600199	ENST00000599538		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000600199	ENST00000443401		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000600199	ENST00000601341		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000600199	ENST00000594948		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-intron	ENST00000600199	ENST00000601912		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-intron	ENST00000600199	ENST00000594092		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-intron	ENST00000600199	ENST00000593919		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
intron-intron	ENST00000600199	ENST00000424804		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000359032	ENST00000316763		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000359032	ENST00000377011		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000359032	ENST00000599538		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000359032	ENST00000443401		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000359032	ENST00000601341		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
In-frame	ENST00000359032	ENST00000594948		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000601912		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000594092		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000593919		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000424804		TCGA	LD	CESC	TCGA-IR-A3LH-01A	AP2A1	chr19	50308833	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000352456	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
Frame-shit	ENST00000595018	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
Frame-shit	ENST00000392006	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
intron-3CDS	ENST00000378215	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
Frame-shit	ENST00000602130	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
Frame-shit	ENST00000593587	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
Frame-shit	ENST00000263367	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
intron-3CDS	ENST00000594207	ENST00000300873		TCGA	LD	CESC	TCGA-IR-A3LH-01A	HNRNPUL1	chr19	41787180	+	GNG8	chr19	47137461	-
intron-3CDS	ENST00000391826	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-3CDS	ENST00000391826	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-intron	ENST00000391826	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000595948	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000595948	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000595948	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000341114	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000341114	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000341114	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	IL4I1	chr19	50430951	-	TBC1D17	chr19	50385298	+
5CDS-5UTR	ENST00000600059	ENST00000339093		TCGA	LD	CESC	TCGA-IR-A3LH-01A	LMTK3	chr19	49000650	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000600059	ENST00000596358		TCGA	LD	CESC	TCGA-IR-A3LH-01A	LMTK3	chr19	49000650	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000600059	ENST00000391853		TCGA	LD	CESC	TCGA-IR-A3LH-01A	LMTK3	chr19	49000650	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000270238	ENST00000339093		TCGA	LD	CESC	TCGA-IR-A3LH-01A	LMTK3	chr19	49000650	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000270238	ENST00000596358		TCGA	LD	CESC	TCGA-IR-A3LH-01A	LMTK3	chr19	49000650	-	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000270238	ENST00000391853		TCGA	LD	CESC	TCGA-IR-A3LH-01A	LMTK3	chr19	49000650	-	NOSIP	chr19	50063949	-
intron-3CDS	ENST00000422090	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-3CDS	ENST00000422090	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-intron	ENST00000422090	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-3CDS	ENST00000413454	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-3CDS	ENST00000413454	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
intron-intron	ENST00000413454	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000352066	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000352066	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000352066	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000597029	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000597029	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000597029	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000597723	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000597723	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000597723	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000596217	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000596217	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000596217	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000600583	ENST00000221543		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-3CDS	ENST00000600583	ENST00000535102		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-intron	ENST00000600583	ENST00000598789		TCGA	LD	CESC	TCGA-IR-A3LH-01A	NUP62	chr19	50430951	-	TBC1D17	chr19	50385298	+
5UTR-5UTR	ENST00000340513	ENST00000376112		TCGA	LD	CESC	TCGA-IR-A3LH-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-5UTR	ENST00000340513	ENST00000376105		TCGA	LD	CESC	TCGA-IR-A3LH-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-5UTR	ENST00000300403	ENST00000376112		TCGA	LD	CESC	TCGA-IR-A3LH-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-5UTR	ENST00000300403	ENST00000376105		TCGA	LD	CESC	TCGA-IR-A3LH-01A	TPX2	chr20	30327424	+	ID1	chr20	30193175	+
5UTR-3CDS	ENST00000589160	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000589160	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000589160	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000589160	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000589160	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000337433	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000337433	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000337433	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000337433	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000337433	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588883	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588883	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588883	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588883	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000588883	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000413984	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000413984	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000413984	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000413984	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000413984	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588742	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588742	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588742	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588742	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000588742	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000300823	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000300823	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000300823	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000300823	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000300823	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588795	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588795	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588795	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000588795	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000588795	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000590089	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000590089	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000590089	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000590089	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000590089	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000454662	ENST00000392038		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000454662	ENST00000424901		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000454662	ENST00000311278		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-3CDS	ENST00000454662	ENST00000579047		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
5UTR-intron	ENST00000454662	ENST00000581582		TCGA	LD	CESC	TCGA-IR-A3LH-01A	ZNF226	chr19	44669960	+	AKT2	chr19	40748594	-
3UTR-3CDS	ENST00000313949	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000313949	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000313949	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000313949	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000313949	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371098	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371098	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371098	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371098	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371098	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000371075	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000371075	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000371075	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000371075	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000371075	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371100	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371100	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371100	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371100	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371100	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371099	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371099	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371099	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371099	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371099	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371102	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371102	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371102	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371102	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371102	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000464624	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000464624	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000464624	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000464624	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
3UTR-3CDS	ENST00000464624	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000306120	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000306120	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000306120	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000306120	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000306120	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371095	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371095	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371095	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371095	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371095	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371085	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371085	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000371085	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371085	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000371085	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000354359	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000354359	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000354359	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000354359	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000354359	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000265620	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000265620	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000265620	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000265620	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000265620	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000306090	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000306090	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
In-frame	ENST00000306090	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000306090	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
Frame-shit	ENST00000306090	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371081	ENST00000229239		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371081	ENST00000396856		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371081	ENST00000396861		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371081	ENST00000396859		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
intron-3CDS	ENST00000371081	ENST00000396858		TCGA	LD	CESC	TCGA-IR-A3LI-01A	GNAS	chr20	57478846	+	GAPDH	chr12	6647267	+
5CDS-3UTR	ENST00000378641	ENST00000483354		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378641	ENST00000380113		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378641	ENST00000455664		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378641	ENST00000399838		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000338037	ENST00000483354		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000338037	ENST00000380113		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000338037	ENST00000455664		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000338037	ENST00000399838		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378637	ENST00000483354		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378637	ENST00000380113		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378637	ENST00000455664		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
5CDS-3UTR	ENST00000378637	ENST00000399838		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
intron-3UTR	ENST00000494924	ENST00000483354		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
intron-3UTR	ENST00000494924	ENST00000380113		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
intron-3UTR	ENST00000494924	ENST00000455664		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
intron-3UTR	ENST00000494924	ENST00000399838		TCGA	LD	CESC	TCGA-IR-A3LK-01A	PLCB1	chr20	8131018	+	ITPA	chr20	3194631	+
Frame-shit	ENST00000307971	ENST00000372733		TCGA	LD	CESC	TCGA-IR-A3LK-01A	WFDC5	chr20	43743640	-	SDC4	chr20	43961709	-
5CDS-5UTR	ENST00000307971	ENST00000537976		TCGA	LD	CESC	TCGA-IR-A3LK-01A	WFDC5	chr20	43743640	-	SDC4	chr20	43961709	-
Frame-shit	ENST00000372789	ENST00000372733		TCGA	LD	CESC	TCGA-IR-A3LK-01A	WFDC5	chr20	43743640	-	SDC4	chr20	43961709	-
5CDS-5UTR	ENST00000372789	ENST00000537976		TCGA	LD	CESC	TCGA-IR-A3LK-01A	WFDC5	chr20	43743640	-	SDC4	chr20	43961709	-
5UTR-5UTR	ENST00000392259	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-3UTR	ENST00000392259	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000392259	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000392266	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-3UTR	ENST00000392266	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000392266	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000264274	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-3UTR	ENST00000264274	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000264274	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000432109	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-3UTR	ENST00000432109	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000432109	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000264275	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-3UTR	ENST00000264275	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000264275	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000392258	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-3UTR	ENST00000392258	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
5UTR-5UTR	ENST00000392258	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
3UTR-5UTR	ENST00000490682	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
3UTR-3UTR	ENST00000490682	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
3UTR-5UTR	ENST00000490682	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
intron-5UTR	ENST00000358485	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
intron-3UTR	ENST00000358485	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
intron-5UTR	ENST00000358485	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
intron-5UTR	ENST00000323492	ENST00000194530		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
intron-3UTR	ENST00000323492	ENST00000488196		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
intron-5UTR	ENST00000323492	ENST00000392249		TCGA	LD	CESC	TCGA-JW-A5VG-01A	CASP8	chr2	202098835	+	STRADB	chr2	202319469	+
In-frame	ENST00000425042	ENST00000307877		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
In-frame	ENST00000425042	ENST00000539137		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
In-frame	ENST00000425042	ENST00000355113		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
5CDS-intron	ENST00000425042	ENST00000602720		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
5CDS-intron	ENST00000425042	ENST00000542536		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
intron-3CDS	ENST00000532900	ENST00000307877		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
intron-3CDS	ENST00000532900	ENST00000539137		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
intron-3CDS	ENST00000532900	ENST00000355113		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
intron-intron	ENST00000532900	ENST00000602720		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
intron-intron	ENST00000532900	ENST00000542536		TCGA	LD	CESC	TCGA-JW-A5VI-01A	HID1	chr17	72968686	-	SRP68	chr17	74057655	-
In-frame	ENST00000448838	ENST00000282908		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000448838	ENST00000512636		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000448838	ENST00000510398		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000448838	ENST00000508728		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
In-frame	ENST00000227868	ENST00000282908		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000227868	ENST00000512636		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000227868	ENST00000510398		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000227868	ENST00000508728		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
In-frame	ENST00000430469	ENST00000282908		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000430469	ENST00000512636		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000430469	ENST00000510398		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
5CDS-intron	ENST00000430469	ENST00000508728		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
intron-3CDS	ENST00000477173	ENST00000282908		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
intron-intron	ENST00000477173	ENST00000512636		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
intron-intron	ENST00000477173	ENST00000510398		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
intron-intron	ENST00000477173	ENST00000508728		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PDHX	chr11	34953031	+	STK32B	chr4	5418572	+
In-frame	ENST00000012443	ENST00000377670		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
In-frame	ENST00000012443	ENST00000244303		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
In-frame	ENST00000012443	ENST00000339613		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000012443	ENST00000472815		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000012443	ENST00000300862		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000012443	ENST00000600383		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000012443	ENST00000420102		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000012443	ENST00000525854		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
In-frame	ENST00000391919	ENST00000377670		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
In-frame	ENST00000391919	ENST00000244303		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
In-frame	ENST00000391919	ENST00000339613		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000391919	ENST00000472815		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000391919	ENST00000300862		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000391919	ENST00000600383		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000391919	ENST00000420102		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
5CDS-intron	ENST00000391919	ENST00000525854		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	PPP5C	chr19	46879831	+	HIF3A	chr19	46838162	+
Frame-shit	ENST00000546530	ENST00000314045		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
Frame-shit	ENST00000546530	ENST00000306014		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5CDS-intron	ENST00000546530	ENST00000549271		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
Frame-shit	ENST00000261729	ENST00000314045		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
Frame-shit	ENST00000261729	ENST00000306014		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5CDS-intron	ENST00000261729	ENST00000549271		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
In-frame	ENST00000446861	ENST00000314045		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
In-frame	ENST00000446861	ENST00000306014		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5CDS-intron	ENST00000446861	ENST00000549271		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
In-frame	ENST00000548055	ENST00000314045		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
In-frame	ENST00000548055	ENST00000306014		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5CDS-intron	ENST00000548055	ENST00000549271		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5UTR-3CDS	ENST00000418411	ENST00000314045		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5UTR-3CDS	ENST00000418411	ENST00000306014		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5UTR-intron	ENST00000418411	ENST00000549271		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	RASAL1	chr12	113545890	-	DDX54	chr12	113616831	-
5CDS-5UTR	ENST00000336429	ENST00000382771		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000336429	ENST00000489441		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-intron	ENST00000336429	ENST00000464346		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000398019	ENST00000382771		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000398019	ENST00000489441		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-intron	ENST00000398019	ENST00000464346		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000540675	ENST00000382771		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000540675	ENST00000489441		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-intron	ENST00000540675	ENST00000464346		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000546027	ENST00000382771		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-5UTR	ENST00000546027	ENST00000489441		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
5CDS-intron	ENST00000546027	ENST00000464346		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	SERPINB7	chr18	61449774	+	SERPINB5	chr18	61151655	+
Frame-shit	ENST00000262238	ENST00000402714		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	YY1	chr14	100728803	+	EVL	chr14	100563818	+
Frame-shit	ENST00000262238	ENST00000544450		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	YY1	chr14	100728803	+	EVL	chr14	100563818	+
Frame-shit	ENST00000262238	ENST00000392920		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	YY1	chr14	100728803	+	EVL	chr14	100563818	+
5CDS-3UTR	ENST00000262238	ENST00000555048		TCGA	LD	CESC	TCGA-JW-A5VJ-01A	YY1	chr14	100728803	+	EVL	chr14	100563818	+
Frame-shit	ENST00000356840	ENST00000259727		TCGA	LD	CESC	TCGA-JW-A69B-01A	MYLIP	chr6	16144095	+	GMPR	chr6	16279016	+
5CDS-intron	ENST00000356840	ENST00000544145		TCGA	LD	CESC	TCGA-JW-A69B-01A	MYLIP	chr6	16144095	+	GMPR	chr6	16279016	+
Frame-shit	ENST00000349606	ENST00000259727		TCGA	LD	CESC	TCGA-JW-A69B-01A	MYLIP	chr6	16144095	+	GMPR	chr6	16279016	+
5CDS-intron	ENST00000349606	ENST00000544145		TCGA	LD	CESC	TCGA-JW-A69B-01A	MYLIP	chr6	16144095	+	GMPR	chr6	16279016	+
Frame-shit	ENST00000367469	ENST00000337019		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
Frame-shit	ENST00000367469	ENST00000366889		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
Frame-shit	ENST00000367469	ENST00000366888		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
5CDS-intron	ENST00000367469	ENST00000542669		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
Frame-shit	ENST00000367467	ENST00000337019		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
Frame-shit	ENST00000367467	ENST00000366889		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
Frame-shit	ENST00000367467	ENST00000366888		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
5CDS-intron	ENST00000367467	ENST00000542669		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
intron-3CDS	ENST00000470750	ENST00000337019		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
intron-3CDS	ENST00000470750	ENST00000366889		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
intron-3CDS	ENST00000470750	ENST00000366888		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
intron-intron	ENST00000470750	ENST00000542669		TCGA	LD	CESC	TCGA-JW-AAVH-01A	SASH1	chr6	148711398	+	PACRG	chr6	163510291	+
In-frame	ENST00000370558	ENST00000234701		TCGA	LD	CESC	TCGA-JX-A3PZ-01A	SH3GLB1	chr1	87181548	+	CLCA1	chr1	86934704	+
Frame-shit	ENST00000370558	ENST00000394711		TCGA	LD	CESC	TCGA-JX-A3PZ-01A	SH3GLB1	chr1	87181548	+	CLCA1	chr1	86934704	+
intron-3CDS	ENST00000535010	ENST00000234701		TCGA	LD	CESC	TCGA-JX-A3PZ-01A	SH3GLB1	chr1	87181548	+	CLCA1	chr1	86934704	+
intron-3CDS	ENST00000535010	ENST00000394711		TCGA	LD	CESC	TCGA-JX-A3PZ-01A	SH3GLB1	chr1	87181548	+	CLCA1	chr1	86934704	+
In-frame	ENST00000482504	ENST00000234701		TCGA	LD	CESC	TCGA-JX-A3PZ-01A	SH3GLB1	chr1	87181548	+	CLCA1	chr1	86934704	+
Frame-shit	ENST00000482504	ENST00000394711		TCGA	LD	CESC	TCGA-JX-A3PZ-01A	SH3GLB1	chr1	87181548	+	CLCA1	chr1	86934704	+
intron-3CDS	ENST00000487394	ENST00000527524		TCGA	LD	CESC	TCGA-JX-A5QV-01A	BCL3	chr19	45252303	+	GRIK4	chr11	120686087	+
intron-3CDS	ENST00000487394	ENST00000438375		TCGA	LD	CESC	TCGA-JX-A5QV-01A	BCL3	chr19	45252303	+	GRIK4	chr11	120686087	+
intron-intron	ENST00000487394	ENST00000527130		TCGA	LD	CESC	TCGA-JX-A5QV-01A	BCL3	chr19	45252303	+	GRIK4	chr11	120686087	+
In-frame	ENST00000164227	ENST00000527524		TCGA	LD	CESC	TCGA-JX-A5QV-01A	BCL3	chr19	45252303	+	GRIK4	chr11	120686087	+
In-frame	ENST00000164227	ENST00000438375		TCGA	LD	CESC	TCGA-JX-A5QV-01A	BCL3	chr19	45252303	+	GRIK4	chr11	120686087	+
5CDS-intron	ENST00000164227	ENST00000527130		TCGA	LD	CESC	TCGA-JX-A5QV-01A	BCL3	chr19	45252303	+	GRIK4	chr11	120686087	+
Frame-shit	ENST00000303657	ENST00000300146		TCGA	LD	CESC	TCGA-LP-A4AW-01A	RFX2	chr19	6039991	-	PATL1	chr11	59405884	-
Frame-shit	ENST00000359161	ENST00000300146		TCGA	LD	CESC	TCGA-LP-A4AW-01A	RFX2	chr19	6039991	-	PATL1	chr11	59405884	-
Frame-shit	ENST00000592546	ENST00000300146		TCGA	LD	CESC	TCGA-LP-A4AW-01A	RFX2	chr19	6039991	-	PATL1	chr11	59405884	-
intron-3CDS	ENST00000587700	ENST00000300146		TCGA	LD	CESC	TCGA-LP-A4AW-01A	RFX2	chr19	6039991	-	PATL1	chr11	59405884	-
5CDS-intron	ENST00000311127	ENST00000526343		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
5CDS-intron	ENST00000311127	ENST00000282441		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
5CDS-intron	ENST00000311127	ENST00000537274		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
5CDS-intron	ENST00000311127	ENST00000345877		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
5CDS-intron	ENST00000311127	ENST00000531439		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
5CDS-intron	ENST00000311127	ENST00000524575		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
5CDS-intron	ENST00000311127	ENST00000528834		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000526343		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000282441		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000537274		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000345877		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000531439		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000524575		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
intron-intron	ENST00000477536	ENST00000528834		TCGA	LD	CESC	TCGA-LP-A4AX-01A	HEG1	chr3	124709631	-	YAP1	chr11	102056749	+
Frame-shit	ENST00000341724	ENST00000378004		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000341724	ENST00000274498		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
5CDS-3UTR	ENST00000341724	ENST00000486650		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000372004	ENST00000378004		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000372004	ENST00000274498		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
5CDS-3UTR	ENST00000372004	ENST00000486650		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000371998	ENST00000378004		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000371998	ENST00000274498		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
5CDS-3UTR	ENST00000371998	ENST00000486650		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000371997	ENST00000378004		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
Frame-shit	ENST00000371997	ENST00000274498		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
5CDS-3UTR	ENST00000371997	ENST00000486650		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
3UTR-3CDS	ENST00000497292	ENST00000378004		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
3UTR-3CDS	ENST00000497292	ENST00000274498		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
3UTR-3UTR	ENST00000497292	ENST00000486650		TCGA	LD	CESC	TCGA-LP-A5U3-01A	NCOA3	chr20	46256767	+	ARHGAP26	chr5	142601923	+
In-frame	ENST00000475381	ENST00000376062		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000475381	ENST00000376055		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000475381	ENST00000307677		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000475381	ENST00000420653		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
In-frame	ENST00000273512	ENST00000376062		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000273512	ENST00000376055		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000273512	ENST00000307677		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000273512	ENST00000420653		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
In-frame	ENST00000538775	ENST00000376062		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000538775	ENST00000376055		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000538775	ENST00000307677		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000538775	ENST00000420653		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000543711	ENST00000376062		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000543711	ENST00000376055		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000543711	ENST00000307677		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000543711	ENST00000420653		TCGA	LD	CESC	TCGA-LP-A7HU-01A	NCEH1	chr3	172428637	-	BCL2L1	chr20	30253889	-
intron-intron	ENST00000245407	ENST00000378953		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000245407	ENST00000337752		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000245407	ENST00000378947		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000245407	ENST00000407797		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000245407	ENST00000464024		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000435065	ENST00000378953		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000435065	ENST00000337752		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000435065	ENST00000378947		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000435065	ENST00000407797		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000435065	ENST00000464024		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000479605	ENST00000378953		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000479605	ENST00000337752		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000479605	ENST00000378947		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000479605	ENST00000407797		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
intron-intron	ENST00000479605	ENST00000464024		TCGA	LD	CESC	TCGA-MA-AA3W-01A	SLC22A5	chr5	131714276	+	C5orf56	chr5	131822249	+
5CDS-intron	ENST00000203407	ENST00000328631		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000340879		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000432678		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000431721		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000449610		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000413298		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000450045		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000446860		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000417896		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000443964		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000436134		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000203407	ENST00000453202		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000328631		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000340879		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000432678		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000431721		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000449610		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000413298		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000450045		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000446860		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000417896		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000443964		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000436134		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
intron-intron	ENST00000493806	ENST00000453202		TCGA	LD	CESC	TCGA-MA-AA3W-01A	UQCRC1	chr3	48643203	-	IP6K2	chr3	48767210	-
5CDS-intron	ENST00000396373	ENST00000217246		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
5CDS-intron	ENST00000396373	ENST00000310348		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
5CDS-intron	ENST00000396373	ENST00000464883		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
5CDS-intron	ENST00000396373	ENST00000402914		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
5CDS-intron	ENST00000396373	ENST00000378058		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
5CDS-intron	ENST00000396373	ENST00000407045		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
3UTR-intron	ENST00000544715	ENST00000217246		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
3UTR-intron	ENST00000544715	ENST00000310348		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
3UTR-intron	ENST00000544715	ENST00000464883		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
3UTR-intron	ENST00000544715	ENST00000402914		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
3UTR-intron	ENST00000544715	ENST00000378058		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
3UTR-intron	ENST00000544715	ENST00000407045		TCGA	LD	CESC	TCGA-MA-AA3X-01A	ETV6	chr12	11905513	+	MACROD2	chr20	14830550	+
Frame-shit	ENST00000569188	ENST00000336278		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
5CDS-intron	ENST00000569188	ENST00000528525		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
intron-3CDS	ENST00000568321	ENST00000336278		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
intron-intron	ENST00000568321	ENST00000528525		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
Frame-shit	ENST00000219322	ENST00000336278		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
5CDS-intron	ENST00000219322	ENST00000528525		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
Frame-shit	ENST00000306560	ENST00000336278		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
5CDS-intron	ENST00000306560	ENST00000528525		TCGA	LD	CESC	TCGA-MA-AA3Y-01A	HAS3	chr16	69147445	+	SNTB2	chr16	69293953	+
intron-3CDS	ENST00000391826	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-intron	ENST00000391826	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-intron	ENST00000391826	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000595948	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000595948	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000595948	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000341114	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000341114	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000341114	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	IL4I1	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-3CDS	ENST00000422090	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-intron	ENST00000422090	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-intron	ENST00000422090	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-3CDS	ENST00000413454	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-intron	ENST00000413454	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
intron-intron	ENST00000413454	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000352066	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000352066	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000352066	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000597029	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000597029	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000597029	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000597723	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000597723	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000597723	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000596217	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000596217	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000596217	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-3CDS	ENST00000600583	ENST00000354293		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000600583	ENST00000600199		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5UTR-intron	ENST00000600583	ENST00000359032		TCGA	LD	CESC	TCGA-MA-AA3Z-01A	NUP62	chr19	50430951	-	AP2A1	chr19	50304647	+
5CDS-intron	ENST00000307102	ENST00000607093		TCGA	LD	CESC	TCGA-MA-AA41-01A	MAP2K1	chr15	66777529	+	LCE1C	chr1	152777974	-
5CDS-5UTR	ENST00000307102	ENST00000368768		TCGA	LD	CESC	TCGA-MA-AA41-01A	MAP2K1	chr15	66777529	+	LCE1C	chr1	152777974	-
5CDS-intron	ENST00000566326	ENST00000607093		TCGA	LD	CESC	TCGA-MA-AA41-01A	MAP2K1	chr15	66777529	+	LCE1C	chr1	152777974	-
5CDS-5UTR	ENST00000566326	ENST00000368768		TCGA	LD	CESC	TCGA-MA-AA41-01A	MAP2K1	chr15	66777529	+	LCE1C	chr1	152777974	-
5CDS-3UTR	ENST00000420826	ENST00000584767		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
5CDS-5UTR	ENST00000420826	ENST00000581589		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
5CDS-intron	ENST00000420826	ENST00000322444		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
intron-3UTR	ENST00000314523	ENST00000584767		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
intron-5UTR	ENST00000314523	ENST00000581589		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
intron-intron	ENST00000314523	ENST00000322444		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
5CDS-3UTR	ENST00000578238	ENST00000584767		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
5CDS-5UTR	ENST00000578238	ENST00000581589		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
5CDS-intron	ENST00000578238	ENST00000322444		TCGA	LD	CESC	TCGA-MA-AA41-01A	SUMO2	chr17	73170847	-	KCTD2	chr17	73030128	+
In-frame	ENST00000338316	ENST00000264645		TCGA	LD	CESC	TCGA-MA-AA43-01A	ADCY2	chr5	7414883	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000537121	ENST00000264645		TCGA	LD	CESC	TCGA-MA-AA43-01A	ADCY2	chr5	7414883	+	CASC3	chr17	38318006	+
intron-3CDS	ENST00000513693	ENST00000264645		TCGA	LD	CESC	TCGA-MA-AA43-01A	ADCY2	chr5	7414883	+	CASC3	chr17	38318006	+
In-frame	ENST00000264645	ENST00000338316		TCGA	LD	CESC	TCGA-MA-AA43-01A	CASC3	chr17	38323114	+	ADCY2	chr5	7414686	+
5CDS-intron	ENST00000264645	ENST00000537121		TCGA	LD	CESC	TCGA-MA-AA43-01A	CASC3	chr17	38323114	+	ADCY2	chr5	7414686	+
5CDS-intron	ENST00000264645	ENST00000513693		TCGA	LD	CESC	TCGA-MA-AA43-01A	CASC3	chr17	38323114	+	ADCY2	chr5	7414686	+
intron-3CDS	ENST00000394126	ENST00000474210		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-5UTR	ENST00000394126	ENST00000394231		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-intron	ENST00000394126	ENST00000577810		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-3CDS	ENST00000356271	ENST00000474210		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-5UTR	ENST00000356271	ENST00000394231		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-intron	ENST00000356271	ENST00000577810		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-3CDS	ENST00000394128	ENST00000474210		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-5UTR	ENST00000394128	ENST00000394231		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-intron	ENST00000394128	ENST00000577810		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-3CDS	ENST00000394127	ENST00000474210		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-5UTR	ENST00000394127	ENST00000394231		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-intron	ENST00000394127	ENST00000577810		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-3CDS	ENST00000501516	ENST00000474210		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-5UTR	ENST00000501516	ENST00000394231		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-intron	ENST00000501516	ENST00000577810		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-3CDS	ENST00000479829	ENST00000474210		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-5UTR	ENST00000479829	ENST00000394231		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
intron-intron	ENST00000479829	ENST00000577810		TCGA	LD	CESC	TCGA-MA-AA43-01A	MED24	chr17	38176178	-	MIEN1	chr17	37886786	-
Frame-shit	ENST00000419617	ENST00000343709		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
In-frame	ENST00000419617	ENST00000448384		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000419617	ENST00000521519		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000523601	ENST00000343709		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
Frame-shit	ENST00000523601	ENST00000448384		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
5CDS-intron	ENST00000523601	ENST00000521519		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
intron-3CDS	ENST00000521768	ENST00000343709		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
intron-3CDS	ENST00000521768	ENST00000448384		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
intron-intron	ENST00000521768	ENST00000521519		TCGA	LD	CESC	TCGA-MA-AA43-01A	STK3	chr8	99538970	-	LRRC69	chr8	92231118	+
intron-3UTR	ENST00000524630	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-5UTR	ENST00000524630	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000524630	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000524630	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000524630	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-3UTR	ENST00000529919	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-5UTR	ENST00000529919	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000529919	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000529919	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000529919	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-3UTR	ENST00000399039	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-5UTR	ENST00000399039	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000399039	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000399039	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
intron-intron	ENST00000399039	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000360682	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000360682	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000360682	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000360682	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000360682	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000361796	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000361796	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361796	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361796	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361796	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000361391	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000361391	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361391	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361391	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361391	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000530094	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000530094	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000530094	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000530094	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000530094	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000428599	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000428599	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000428599	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000428599	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000428599	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000361332	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000361332	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361332	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361332	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000361332	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000527467	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000527467	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000527467	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000527467	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000527467	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000415361	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000415361	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000415361	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000415361	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000415361	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000532245	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000532245	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532245	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532245	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532245	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000532463	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000532463	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532463	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532463	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532463	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000528232	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000528232	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000528232	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000528232	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000528232	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000529986	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000529986	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529986	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529986	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529986	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000531014	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000531014	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000531014	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000531014	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000531014	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000358694	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000358694	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000358694	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000358694	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000358694	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000526772	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000526772	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526772	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526772	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526772	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000532787	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000532787	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532787	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532787	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532787	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000533667	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000533667	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000533667	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000533667	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000533667	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000529873	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000529873	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529873	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529873	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529873	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000525902	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000525902	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000525902	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000525902	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000525902	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000529526	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000529526	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529526	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529526	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000529526	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000532649	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000532649	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532649	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532649	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532649	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000426142	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000426142	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000426142	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000426142	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000426142	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000532844	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000532844	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532844	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532844	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000532844	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000528621	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000528621	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000528621	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000528621	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000528621	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000399050	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000399050	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000399050	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000399050	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000399050	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000526357	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000526357	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526357	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526357	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526357	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000530748	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000530748	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000530748	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000530748	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000530748	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000534579	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000534579	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000534579	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000534579	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000534579	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-3UTR	ENST00000526938	ENST00000525620		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-5UTR	ENST00000526938	ENST00000535888		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526938	ENST00000544661		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526938	ENST00000332793		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5UTR-intron	ENST00000526938	ENST00000526800		TCGA	LD	CESC	TCGA-MU-A51Y-01A	CTNND1	chr11	57529518	+	SLC22A10	chr11	62934335	+
5CDS-3UTR	ENST00000298048	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000298048	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000298048	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000538311	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000538311	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000538311	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000536987	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000536987	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000536987	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000536860	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000536860	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000536860	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000545008	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000545008	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000545008	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000536329	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000536329	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000536329	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000541717	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000541717	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000541717	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000543751	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000543751	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000543751	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
3UTR-3UTR	ENST00000487398	ENST00000525951		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
3UTR-5UTR	ENST00000487398	ENST00000537076		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
3UTR-5UTR	ENST00000487398	ENST00000016913		TCGA	LD	CESC	TCGA-MU-A5YI-01A	MELK	chr9	36607670	+	MS4A12	chr11	60264786	+
Frame-shit	ENST00000254958	ENST00000334534		TCGA	LD	CESC	TCGA-MY-A5BE-01A	JAG1	chr20	10622108	-	SLX4IP	chr20	10582379	+
In-frame	ENST00000423891	ENST00000334534		TCGA	LD	CESC	TCGA-MY-A5BE-01A	JAG1	chr20	10622108	-	SLX4IP	chr20	10582379	+
intron-3CDS	ENST00000488480	ENST00000334534		TCGA	LD	CESC	TCGA-MY-A5BE-01A	JAG1	chr20	10622108	-	SLX4IP	chr20	10582379	+
5CDS-3UTR	ENST00000260247	ENST00000525739		TCGA	LD	CESC	TCGA-MY-A913-01A	DCUN1D5	chr11	102953985	-	WTAPP1	chr11	102668755	+
intron-3UTR	ENST00000531543	ENST00000525739		TCGA	LD	CESC	TCGA-MY-A913-01A	DCUN1D5	chr11	102953985	-	WTAPP1	chr11	102668755	+
intron-3UTR	ENST00000529076	ENST00000525739		TCGA	LD	CESC	TCGA-MY-A913-01A	DCUN1D5	chr11	102953985	-	WTAPP1	chr11	102668755	+
Frame-shit	ENST00000375735	ENST00000315274		TCGA	LD	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103041019	+	MMP1	chr11	102666022	-
intron-3CDS	ENST00000334267	ENST00000315274		TCGA	LD	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103041019	+	MMP1	chr11	102666022	-
Frame-shit	ENST00000398093	ENST00000315274		TCGA	LD	CESC	TCGA-MY-A913-01A	DYNC2H1	chr11	103041019	+	MMP1	chr11	102666022	-
intron-3CDS	ENST00000315274	ENST00000260247		TCGA	LD	CESC	TCGA-MY-A913-01A	MMP1	chr11	102668797	-	DCUN1D5	chr11	102960035	-
intron-intron	ENST00000315274	ENST00000531543		TCGA	LD	CESC	TCGA-MY-A913-01A	MMP1	chr11	102668797	-	DCUN1D5	chr11	102960035	-
intron-5UTR	ENST00000315274	ENST00000529076		TCGA	LD	CESC	TCGA-MY-A913-01A	MMP1	chr11	102668797	-	DCUN1D5	chr11	102960035	-
Frame-shit	ENST00000223864	ENST00000539801		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
Frame-shit	ENST00000223864	ENST00000381652		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
Frame-shit	ENST00000223864	ENST00000544510		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
5CDS-intron	ENST00000223864	ENST00000487310		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
5UTR-3CDS	ENST00000482696	ENST00000539801		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
5UTR-3CDS	ENST00000482696	ENST00000381652		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
5UTR-3CDS	ENST00000482696	ENST00000544510		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
5UTR-intron	ENST00000482696	ENST00000487310		TCGA	LD	CESC	TCGA-PN-A8MA-01A	PLGRKT	chr9	5431897	-	JAK2	chr9	5123004	+
In-frame	ENST00000404338	ENST00000413379		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
In-frame	ENST00000404338	ENST00000540850		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
In-frame	ENST00000404338	ENST00000598840		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
In-frame	ENST00000404338	ENST00000270225		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
In-frame	ENST00000404338	ENST00000392776		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000598548	ENST00000413379		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000598548	ENST00000540850		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000598548	ENST00000598840		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000598548	ENST00000270225		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000598548	ENST00000392776		TCGA	LD	CESC	TCGA-Q1-A5R2-01A	ARHGAP35	chr19	47425613	+	SAE1	chr19	47673075	+
Frame-shit	ENST00000523111	ENST00000523944		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
Frame-shit	ENST00000523111	ENST00000262105		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5CDS-intron	ENST00000523111	ENST00000518680		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5UTR-3CDS	ENST00000521346	ENST00000523944		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5UTR-3CDS	ENST00000521346	ENST00000262105		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5UTR-intron	ENST00000521346	ENST00000518680		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5UTR-3CDS	ENST00000517630	ENST00000523944		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5UTR-3CDS	ENST00000517630	ENST00000262105		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
5UTR-intron	ENST00000517630	ENST00000518680		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
intron-3CDS	ENST00000520809	ENST00000523944		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
intron-3CDS	ENST00000520809	ENST00000262105		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
intron-intron	ENST00000520809	ENST00000518680		TCGA	LD	CESC	TCGA-Q1-A6DT-01A	UBE2V2	chr8	48921030	+	MCM4	chr8	48879925	+
intron-3CDS	ENST00000506177	ENST00000247306		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
intron-3CDS	ENST00000506177	ENST00000369585		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
Frame-shit	ENST00000379290	ENST00000247306		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
In-frame	ENST00000379290	ENST00000369585		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
Frame-shit	ENST00000379289	ENST00000247306		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
In-frame	ENST00000379289	ENST00000369585		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
In-frame	ENST00000379288	ENST00000247306		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
Frame-shit	ENST00000379288	ENST00000369585		TCGA	LD	CESC	TCGA-Q1-A73P-01A	TTLL10	chr1	1120489	+	CTAG2	chrX	153880541	-
In-frame	ENST00000584601	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	LD	CESC	TCGA-Q1-A73R-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
In-frame	ENST00000260795	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
In-frame	ENST00000352904	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	LD	CESC	TCGA-Q1-A73R-01A	FGFR3	chr4	1808947	+	TACC3	chr4	1742621	+
5CDS-5UTR	ENST00000579146	ENST00000394246		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000579146	ENST00000269582		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000579146	ENST00000581428		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000300658	ENST00000394246		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000300658	ENST00000269582		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000300658	ENST00000581428		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000378011	ENST00000394246		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000378011	ENST00000269582		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000378011	ENST00000581428		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000429199	ENST00000394246		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000429199	ENST00000269582		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000429199	ENST00000581428		TCGA	LD	CESC	TCGA-Q1-A73R-01A	PGAP3	chr17	37844087	-	PNMT	chr17	37825882	+
intron-3CDS	ENST00000344423	ENST00000301905		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
intron-3CDS	ENST00000344423	ENST00000522944		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
5UTR-3CDS	ENST00000523202	ENST00000301905		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
5UTR-3CDS	ENST00000523202	ENST00000522944		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
intron-3CDS	ENST00000523095	ENST00000301905		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
intron-3CDS	ENST00000523095	ENST00000522944		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
intron-3CDS	ENST00000519730	ENST00000301905		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
intron-3CDS	ENST00000519730	ENST00000522944		TCGA	LD	CESC	TCGA-Q1-A73S-01A	ZNF395	chr8	28242597	-	PBK	chr8	27668651	-
Frame-shit	ENST00000539605	ENST00000320574		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
Frame-shit	ENST00000539605	ENST00000535270		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
5CDS-intron	ENST00000539605	ENST00000434528		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
Frame-shit	ENST00000357997	ENST00000320574		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
Frame-shit	ENST00000357997	ENST00000535270		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
5CDS-intron	ENST00000357997	ENST00000434528		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-3CDS	ENST00000542282	ENST00000320574		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-3CDS	ENST00000542282	ENST00000535270		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-intron	ENST00000542282	ENST00000434528		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-3CDS	ENST00000542657	ENST00000320574		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-3CDS	ENST00000542657	ENST00000535270		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-intron	ENST00000542657	ENST00000434528		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-3CDS	ENST00000542374	ENST00000320574		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-3CDS	ENST00000542374	ENST00000535270		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
intron-intron	ENST00000542374	ENST00000434528		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
Frame-shit	ENST00000337516	ENST00000320574		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
Frame-shit	ENST00000337516	ENST00000535270		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
5CDS-intron	ENST00000337516	ENST00000434528		TCGA	LD	CESC	TCGA-R2-A69V-01A	ANKLE2	chr12	133324418	-	POLE	chr12	133209381	-
Frame-shit	ENST00000396401	ENST00000378017		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
Frame-shit	ENST00000396401	ENST00000518547		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-5UTR	ENST00000396401	ENST00000354184		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000396401	ENST00000395508		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000396401	ENST00000325064		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000396401	ENST00000431961		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000396401	ENST00000523587		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000396401	ENST00000524090		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
Frame-shit	ENST00000521604	ENST00000378017		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
Frame-shit	ENST00000521604	ENST00000518547		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-5UTR	ENST00000521604	ENST00000354184		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000521604	ENST00000395508		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000521604	ENST00000325064		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000521604	ENST00000431961		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000521604	ENST00000523587		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5CDS-intron	ENST00000521604	ENST00000524090		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-3CDS	ENST00000521086	ENST00000378017		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-3CDS	ENST00000521086	ENST00000518547		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-5UTR	ENST00000521086	ENST00000354184		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-intron	ENST00000521086	ENST00000395508		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-intron	ENST00000521086	ENST00000325064		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-intron	ENST00000521086	ENST00000431961		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-intron	ENST00000521086	ENST00000523587		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
5UTR-intron	ENST00000521086	ENST00000524090		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-3CDS	ENST00000522635	ENST00000378017		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-3CDS	ENST00000522635	ENST00000518547		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-5UTR	ENST00000522635	ENST00000354184		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000522635	ENST00000395508		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000522635	ENST00000325064		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000522635	ENST00000431961		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000522635	ENST00000523587		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000522635	ENST00000524090		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-3CDS	ENST00000520534	ENST00000378017		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-3CDS	ENST00000520534	ENST00000518547		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-5UTR	ENST00000520534	ENST00000354184		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000520534	ENST00000395508		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000520534	ENST00000325064		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000520534	ENST00000431961		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000520534	ENST00000523587		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000520534	ENST00000524090		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-3CDS	ENST00000518784	ENST00000378017		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-3CDS	ENST00000518784	ENST00000518547		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-5UTR	ENST00000518784	ENST00000354184		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000518784	ENST00000395508		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000518784	ENST00000325064		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000518784	ENST00000431961		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000518784	ENST00000523587		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
intron-intron	ENST00000518784	ENST00000524090		TCGA	LD	CESC	TCGA-R2-A69V-01A	TCEA1	chr8	54906228	-	MTSS1	chr8	125716432	-
3UTR-3CDS	ENST00000398645	ENST00000325558		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000398645	ENST00000543125		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000398645	ENST00000538258		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-3CDS	ENST00000529006	ENST00000325558		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000529006	ENST00000543125		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000529006	ENST00000538258		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-3CDS	ENST00000526258	ENST00000325558		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000526258	ENST00000543125		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000526258	ENST00000538258		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-3CDS	ENST00000308783	ENST00000325558		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000308783	ENST00000543125		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000308783	ENST00000538258		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-3CDS	ENST00000530342	ENST00000325558		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000530342	ENST00000543125		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
3UTR-intron	ENST00000530342	ENST00000538258		TCGA	LD	CESC	TCGA-RA-A741-01A	KDM2A	chr11	67023760	+	PGA3	chr11	60975870	+
intron-3CDS	ENST00000319481	ENST00000310999		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000319481	ENST00000430466		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000319481	ENST00000524576		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000319481	ENST00000329819		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
5UTR-3CDS	ENST00000399443	ENST00000310999		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
5UTR-3CDS	ENST00000399443	ENST00000430466		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
5UTR-5UTR	ENST00000399443	ENST00000524576		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
5UTR-5UTR	ENST00000399443	ENST00000329819		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000357041	ENST00000310999		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000357041	ENST00000430466		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000357041	ENST00000524576		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000357041	ENST00000329819		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000399441	ENST00000310999		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000399441	ENST00000430466		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000399441	ENST00000524576		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000399441	ENST00000329819		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000582618	ENST00000310999		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-3CDS	ENST00000582618	ENST00000430466		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000582618	ENST00000524576		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000582618	ENST00000329819		TCGA	LD	CESC	TCGA-RA-A741-01A	OSBPL1A	chr18	21851586	-	MRPL11	chr11	66205730	-
intron-5UTR	ENST00000487394	ENST00000587331		TCGA	LD	CESC	TCGA-VS-A8EC-01A	BCL3	chr19	45259597	+	CEACAM16	chr19	45204631	+
intron-5UTR	ENST00000487394	ENST00000405314		TCGA	LD	CESC	TCGA-VS-A8EC-01A	BCL3	chr19	45259597	+	CEACAM16	chr19	45204631	+
5CDS-5UTR	ENST00000164227	ENST00000587331		TCGA	LD	CESC	TCGA-VS-A8EC-01A	BCL3	chr19	45259597	+	CEACAM16	chr19	45204631	+
5CDS-5UTR	ENST00000164227	ENST00000405314		TCGA	LD	CESC	TCGA-VS-A8EC-01A	BCL3	chr19	45259597	+	CEACAM16	chr19	45204631	+
3UTR-3CDS	ENST00000359867	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000359867	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000359867	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000359867	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000359867	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000359867	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000359867	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000359867	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000396832	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000396832	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000396832	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000396832	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000396832	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000396832	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000396832	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000396832	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000400206	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000400206	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-3CDS	ENST00000400206	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000400206	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000400206	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000400206	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000400206	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
3UTR-intron	ENST00000400206	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
In-frame	ENST00000403904	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
In-frame	ENST00000403904	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
In-frame	ENST00000403904	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
5CDS-intron	ENST00000403904	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
5CDS-intron	ENST00000403904	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
5CDS-intron	ENST00000403904	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
5CDS-intron	ENST00000403904	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
5CDS-intron	ENST00000403904	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000413574	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000413574	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000413574	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000413574	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000413574	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000413574	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000413574	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000413574	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000405675	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000405675	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000405675	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000405675	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000405675	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000405675	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000405675	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000405675	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000498529	ENST00000332509		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000498529	ENST00000335539		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-3CDS	ENST00000498529	ENST00000402064		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000498529	ENST00000490473		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000498529	ENST00000436218		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000498529	ENST00000447598		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000498529	ENST00000435484		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
intron-intron	ENST00000498529	ENST00000417303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CSNK1E	chr22	38689261	-	PLA2G6	chr22	38512218	-
5CDS-intron	ENST00000356079	ENST00000581852		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000403303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000383096		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000300227		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000579916		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000406524		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000583930		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000402325		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000579947		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000356079	ENST00000583550		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000581852		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000403303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000383096		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000300227		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000579916		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000406524		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000583930		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000402325		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000579947		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
3UTR-intron	ENST00000461371	ENST00000583550		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000581852		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000403303		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000383096		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000300227		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000579916		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000406524		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000583930		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000402325		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000579947		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
5CDS-intron	ENST00000429815	ENST00000583550		TCGA	LD	CESC	TCGA-VS-A8EC-01A	CYP20A1	chr2	204116832	+	CCDC178	chr18	30795659	-
Frame-shit	ENST00000357056	ENST00000389857		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-intron	ENST00000357056	ENST00000331194		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-intron	ENST00000357056	ENST00000389856		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-intron	ENST00000357056	ENST00000553403		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-5UTR	ENST00000357056	ENST00000554165		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
Frame-shit	ENST00000328459	ENST00000389857		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-intron	ENST00000328459	ENST00000331194		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-intron	ENST00000328459	ENST00000389856		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-intron	ENST00000328459	ENST00000553403		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-5UTR	ENST00000328459	ENST00000554165		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
intron-3CDS	ENST00000554654	ENST00000389857		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
intron-intron	ENST00000554654	ENST00000331194		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
intron-intron	ENST00000554654	ENST00000389856		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
intron-intron	ENST00000554654	ENST00000553403		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
intron-5UTR	ENST00000554654	ENST00000554165		TCGA	LD	CESC	TCGA-VS-A8EC-01A	TTC7B	chr14	91247082	-	CCDC88C	chr14	91883182	-
5CDS-5UTR	ENST00000272321	ENST00000313349		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000272321	ENST00000476805		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409199	ENST00000313349		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409199	ENST00000476805		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409120	ENST00000313349		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409120	ENST00000476805		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000398544	ENST00000313349		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000398544	ENST00000476805		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409562	ENST00000313349		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409562	ENST00000476805		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5UTR-5UTR	ENST00000409835	ENST00000313349		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5UTR-5UTR	ENST00000409835	ENST00000476805		TCGA	LD	CESC	TCGA-VS-A8EC-01A	WDPCP	chr2	63664555	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000268489	ENST00000429149		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-intron	ENST00000268489	ENST00000569641		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-intron	ENST00000268489	ENST00000288098		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-intron	ENST00000268489	ENST00000566361		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-5UTR	ENST00000397992	ENST00000429149		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-intron	ENST00000397992	ENST00000569641		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-intron	ENST00000397992	ENST00000288098		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
5CDS-intron	ENST00000397992	ENST00000566361		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
intron-5UTR	ENST00000558842	ENST00000429149		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
intron-intron	ENST00000558842	ENST00000569641		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
intron-intron	ENST00000558842	ENST00000288098		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
intron-intron	ENST00000558842	ENST00000566361		TCGA	LD	CESC	TCGA-VS-A8EC-01A	ZFHX3	chr16	72984368	-	IL34	chr16	70680451	+
Frame-shit	ENST00000431281	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000431281	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000431281	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000591859	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000591859	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000591859	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000586346	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000586346	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000586346	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
In-frame	ENST00000398322	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
In-frame	ENST00000398322	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
In-frame	ENST00000398322	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000592162	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000592162	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000592162	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000376955	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000376955	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
Frame-shit	ENST00000376955	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
In-frame	ENST00000321854	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
In-frame	ENST00000321854	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
In-frame	ENST00000321854	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000591136	ENST00000496930		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000591136	ENST00000393465		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000591136	ENST00000320254		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ACBD4	chr17	43216527	+	LRRC37A	chr17	44412911	+
intron-3CDS	ENST00000394071	ENST00000553891		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-3CDS	ENST00000394071	ENST00000318876		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-3CDS	ENST00000394071	ENST00000556143		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-intron	ENST00000394071	ENST00000394207		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-intron	ENST00000394071	ENST00000555072		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-intron	ENST00000394071	ENST00000554145		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5UTR-3CDS	ENST00000286523	ENST00000553891		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5UTR-3CDS	ENST00000286523	ENST00000318876		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5UTR-3CDS	ENST00000286523	ENST00000556143		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5UTR-intron	ENST00000286523	ENST00000394207		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5UTR-intron	ENST00000286523	ENST00000555072		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5UTR-intron	ENST00000286523	ENST00000554145		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-3CDS	ENST00000486739	ENST00000553891		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-3CDS	ENST00000486739	ENST00000318876		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-3CDS	ENST00000486739	ENST00000556143		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-intron	ENST00000486739	ENST00000394207		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-intron	ENST00000486739	ENST00000555072		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
intron-intron	ENST00000486739	ENST00000554145		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	ELMSAN1	chr14	74226466	-	ZFYVE1	chr14	73465023	-
5CDS-5UTR	ENST00000528896	ENST00000293493		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-5UTR	ENST00000528896	ENST00000339069		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-5UTR	ENST00000528896	ENST00000314537		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-5UTR	ENST00000528896	ENST00000352855		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-5UTR	ENST00000528896	ENST00000577353		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-5UTR	ENST00000528896	ENST00000398285		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-intron	ENST00000528896	ENST00000548791		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-intron	ENST00000528896	ENST00000551817		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-intron	ENST00000528896	ENST00000550606		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-intron	ENST00000528896	ENST00000552724		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-intron	ENST00000528896	ENST00000547258		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5CDS-intron	ENST00000528896	ENST00000551221		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000544884	ENST00000293493		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000544884	ENST00000339069		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000544884	ENST00000314537		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000544884	ENST00000352855		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000544884	ENST00000577353		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000544884	ENST00000398285		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000544884	ENST00000548791		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000544884	ENST00000551817		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000544884	ENST00000550606		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000544884	ENST00000552724		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000544884	ENST00000547258		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000544884	ENST00000551221		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000389003	ENST00000293493		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000389003	ENST00000339069		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000389003	ENST00000314537		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000389003	ENST00000352855		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000389003	ENST00000577353		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-5UTR	ENST00000389003	ENST00000398285		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000389003	ENST00000548791		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000389003	ENST00000551817		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000389003	ENST00000550606		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000389003	ENST00000552724		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000389003	ENST00000547258		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-intron	ENST00000389003	ENST00000551221		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-5UTR	ENST00000579924	ENST00000293493		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-5UTR	ENST00000579924	ENST00000339069		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-5UTR	ENST00000579924	ENST00000314537		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-5UTR	ENST00000579924	ENST00000352855		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-5UTR	ENST00000579924	ENST00000577353		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-5UTR	ENST00000579924	ENST00000398285		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-intron	ENST00000579924	ENST00000548791		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-intron	ENST00000579924	ENST00000551817		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-intron	ENST00000579924	ENST00000550606		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-intron	ENST00000579924	ENST00000552724		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-intron	ENST00000579924	ENST00000547258		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
intron-intron	ENST00000579924	ENST00000551221		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	KIAA0100	chr17	26970628	-	CRHR1	chr17	43884376	+
5UTR-3CDS	ENST00000354329	ENST00000254066		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000354329	ENST00000394089		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000354329	ENST00000425707		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000354329	ENST00000394086		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000354329	ENST00000394081		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000354329	ENST00000420042		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-3CDS	ENST00000529578	ENST00000254066		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-3CDS	ENST00000529578	ENST00000394089		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000529578	ENST00000425707		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000529578	ENST00000394086		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000529578	ENST00000394081		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000529578	ENST00000420042		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-3CDS	ENST00000533112	ENST00000254066		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-3CDS	ENST00000533112	ENST00000394089		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000533112	ENST00000425707		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000533112	ENST00000394086		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000533112	ENST00000394081		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
intron-intron	ENST00000533112	ENST00000420042		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000531253	ENST00000254066		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000531253	ENST00000394089		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000531253	ENST00000425707		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000531253	ENST00000394086		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000531253	ENST00000394081		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000531253	ENST00000420042		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000527372	ENST00000254066		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000527372	ENST00000394089		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000527372	ENST00000425707		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000527372	ENST00000394086		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000527372	ENST00000394081		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
5UTR-intron	ENST00000527372	ENST00000420042		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO18A	chr17	27507331	-	RARA	chr17	38504568	+
Frame-shit	ENST00000318217	ENST00000315392		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000318217	ENST00000493200		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000318217	ENST00000539608		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000318217	ENST00000444911		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000318217	ENST00000394316		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
In-frame	ENST00000394649	ENST00000315392		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000394649	ENST00000493200		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394649	ENST00000539608		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000394649	ENST00000444911		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000394649	ENST00000394316		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000579584	ENST00000315392		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-5UTR	ENST00000579584	ENST00000493200		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000579584	ENST00000539608		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-3UTR	ENST00000579584	ENST00000444911		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
5CDS-intron	ENST00000579584	ENST00000394316		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-3CDS	ENST00000584232	ENST00000315392		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-5UTR	ENST00000584232	ENST00000493200		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-3UTR	ENST00000584232	ENST00000539608		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-3UTR	ENST00000584232	ENST00000444911		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-intron	ENST00000584232	ENST00000394316		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-3CDS	ENST00000583621	ENST00000315392		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-5UTR	ENST00000583621	ENST00000493200		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-3UTR	ENST00000583621	ENST00000539608		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-3UTR	ENST00000583621	ENST00000444911		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
intron-intron	ENST00000583621	ENST00000394316		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	MYO1D	chr17	30980861	-	PLXDC1	chr17	37224212	-
Frame-shit	ENST00000580974	ENST00000336915		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000580974	ENST00000584924		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000299954	ENST00000336915		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000299954	ENST00000584924		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000335257	ENST00000336915		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000335257	ENST00000584924		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000581322	ENST00000336915		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
Frame-shit	ENST00000581322	ENST00000584924		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	PITPNC1	chr17	65374318	+	SKAP1	chr17	46248021	-
3UTR-3CDS	ENST00000579301	ENST00000269033		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SMURF2P1	chr17	28927934	+	SSH2	chr17	28030080	-
3UTR-3CDS	ENST00000579301	ENST00000540801		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SMURF2P1	chr17	28927934	+	SSH2	chr17	28030080	-
3UTR-5UTR	ENST00000579301	ENST00000324677		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SMURF2P1	chr17	28927934	+	SSH2	chr17	28030080	-
3UTR-intron	ENST00000579301	ENST00000582084		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SMURF2P1	chr17	28927934	+	SSH2	chr17	28030080	-
3UTR-intron	ENST00000579301	ENST00000590153		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SMURF2P1	chr17	28927934	+	SSH2	chr17	28030080	-
3UTR-intron	ENST00000579301	ENST00000579954		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SMURF2P1	chr17	28927934	+	SSH2	chr17	28030080	-
Frame-shit	ENST00000269033	ENST00000426726		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
Frame-shit	ENST00000269033	ENST00000590941		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
Frame-shit	ENST00000269033	ENST00000225441		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
Frame-shit	ENST00000540801	ENST00000426726		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
Frame-shit	ENST00000540801	ENST00000590941		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
Frame-shit	ENST00000540801	ENST00000225441		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
5UTR-3CDS	ENST00000324677	ENST00000426726		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
5UTR-3CDS	ENST00000324677	ENST00000590941		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
5UTR-3CDS	ENST00000324677	ENST00000225441		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000582084	ENST00000426726		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000582084	ENST00000590941		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000582084	ENST00000225441		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000590153	ENST00000426726		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000590153	ENST00000590941		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000590153	ENST00000225441		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000579954	ENST00000426726		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000579954	ENST00000590941		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
intron-3CDS	ENST00000579954	ENST00000225441		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	SSH2	chr17	28022477	-	RUNDC3A	chr17	42393753	+
Frame-shit	ENST00000393066	ENST00000397786		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
5CDS-intron	ENST00000393066	ENST00000580896		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
Frame-shit	ENST00000262294	ENST00000397786		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
5CDS-intron	ENST00000262294	ENST00000580896		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
Frame-shit	ENST00000376149	ENST00000397786		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
5CDS-intron	ENST00000376149	ENST00000580896		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
Frame-shit	ENST00000393065	ENST00000397786		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
5CDS-intron	ENST00000393065	ENST00000580896		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
intron-3CDS	ENST00000584889	ENST00000397786		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
intron-intron	ENST00000584889	ENST00000580896		TCGA	LD	CESC	TCGA-VS-A8EJ-01A	TRIM37	chr17	57148184	-	MED13	chr17	60130066	-
5CDS-intron	ENST00000327134	ENST00000446160		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PAK2	chr3	196547438	+	ANKUB1	chr3	149569113	-
5CDS-intron	ENST00000327134	ENST00000383050		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PAK2	chr3	196547438	+	ANKUB1	chr3	149569113	-
5CDS-intron	ENST00000327134	ENST00000462519		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PAK2	chr3	196547438	+	ANKUB1	chr3	149569113	-
5CDS-5UTR	ENST00000327134	ENST00000473672		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PAK2	chr3	196547438	+	ANKUB1	chr3	149569113	-
5CDS-intron	ENST00000514342	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514342	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000514342	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505697	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000505697	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-intron	ENST00000511363	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
3UTR-5UTR	ENST00000511363	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000503750	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000503750	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000281631	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000281631	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000514067	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000514067	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000505554	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000505554	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000513738	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-5UTR	ENST00000513738	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000287152		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000394362		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000373213		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000373216		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000229913		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000373215		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000538893		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-intron	ENST00000503665	ENST00000541946		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-5UTR	ENST00000503665	ENST00000465719		TCGA	LD	CESC	TCGA-VS-A8EK-01A	PARP8	chr5	50122637	+	KIF6	chr6	39659638	-
intron-3CDS	ENST00000418703	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000418703	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000418703	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000418703	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000418703	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000261740	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000261740	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000261740	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000261740	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000392719	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000392719	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000392719	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000392719	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-3CDS	ENST00000346520	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000346520	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000346520	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5UTR-intron	ENST00000346520	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000541794	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000541794	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000541794	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000541794	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536838	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000536838	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000536838	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000536838	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000544971	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000544971	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000544971	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000544971	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000537083	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000537083	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000537083	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000537083	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000355312		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000356259		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000338373		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000360185		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000343646		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000354574		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000457474		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000361006		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000553118		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-3CDS	ENST00000536570	ENST00000551209		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000536570	ENST00000548655		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000536570	ENST00000547815		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
intron-intron	ENST00000536570	ENST00000320063		TCGA	LD	CESC	TCGA-VS-A8EL-01A	TRPV4	chr12	110271155	-	GIT2	chr12	110399490	-
5CDS-5UTR	ENST00000339082	ENST00000270066		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000339082	ENST00000601170		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000601723	ENST00000270066		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000601723	ENST00000601170		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000340093	ENST00000270066		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000340093	ENST00000601170		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000221264	ENST00000270066		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000221264	ENST00000601170		TCGA	LD	CESC	TCGA-VS-A8Q8-01A	PLAUR	chr19	44171733	-	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000316448	ENST00000419318		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	CALR	chr19	13051701	+	ZNF799	chr19	12504237	-
5CDS-5UTR	ENST00000316448	ENST00000430385		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	CALR	chr19	13051701	+	ZNF799	chr19	12504237	-
5CDS-5UTR	ENST00000316448	ENST00000595766		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	CALR	chr19	13051701	+	ZNF799	chr19	12504237	-
intron-3CDS	ENST00000397668	ENST00000316939		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	HOOK2	chr19	12903138	-	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000264827	ENST00000316939		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	HOOK2	chr19	12903138	-	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000589965	ENST00000316939		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	HOOK2	chr19	12903138	-	GADD45GIP1	chr19	13065340	-
Frame-shit	ENST00000558518	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
Frame-shit	ENST00000557933	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
Frame-shit	ENST00000455727	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
Frame-shit	ENST00000535915	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
Frame-shit	ENST00000545707	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
Frame-shit	ENST00000558013	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
intron-3CDS	ENST00000560628	ENST00000316448		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	LDLR	chr19	11227674	+	CALR	chr19	13049948	+
Frame-shit	ENST00000012443	ENST00000316939		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	PPP5C	chr19	46879831	+	GADD45GIP1	chr19	13065340	-
Frame-shit	ENST00000391919	ENST00000316939		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	PPP5C	chr19	46879831	+	GADD45GIP1	chr19	13065340	-
In-frame	ENST00000254321	ENST00000602198		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
In-frame	ENST00000254321	ENST00000253435		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-3UTR	ENST00000254321	ENST00000601707		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
5CDS-5UTR	ENST00000254321	ENST00000598265		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000482090	ENST00000602198		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3CDS	ENST00000482090	ENST00000253435		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
intron-3UTR	ENST00000482090	ENST00000601707		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
intron-5UTR	ENST00000482090	ENST00000598265		TCGA	LD	CESC	TCGA-VS-A8Q9-01A	ZNF700	chr19	12036088	+	TEX101	chr19	43920033	+
Frame-shit	ENST00000375592	ENST00000358432		TCGA	LD	CESC	TCGA-VS-A8QC-01A	FBXO42	chr1	16632298	-	EPHA2	chr1	16451815	-
5CDS-intron	ENST00000375592	ENST00000461614		TCGA	LD	CESC	TCGA-VS-A8QC-01A	FBXO42	chr1	16632298	-	EPHA2	chr1	16451815	-
5UTR-3CDS	ENST00000478089	ENST00000358432		TCGA	LD	CESC	TCGA-VS-A8QC-01A	FBXO42	chr1	16632298	-	EPHA2	chr1	16451815	-
5UTR-intron	ENST00000478089	ENST00000461614		TCGA	LD	CESC	TCGA-VS-A8QC-01A	FBXO42	chr1	16632298	-	EPHA2	chr1	16451815	-
In-frame	ENST00000229854	ENST00000371117		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
In-frame	ENST00000229854	ENST00000340994		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
In-frame	ENST00000596288	ENST00000371117		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
In-frame	ENST00000596288	ENST00000340994		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
intron-3CDS	ENST00000419835	ENST00000371117		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
intron-3CDS	ENST00000419835	ENST00000340994		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
intron-3CDS	ENST00000476448	ENST00000371117		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
intron-3CDS	ENST00000476448	ENST00000340994		TCGA	LD	CESC	TCGA-VS-A8QC-01A	MCM3	chr6	52148092	-	PKHD1	chr6	51918049	-
5CDS-intron	ENST00000427191	ENST00000473559		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000427191	ENST00000503001		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-3UTR	ENST00000427191	ENST00000295898		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000436978	ENST00000473559		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000436978	ENST00000503001		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-3UTR	ENST00000436978	ENST00000295898		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
intron-intron	ENST00000502971	ENST00000473559		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
intron-intron	ENST00000502971	ENST00000503001		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
intron-3UTR	ENST00000502971	ENST00000295898		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000411767	ENST00000473559		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000411767	ENST00000503001		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-3UTR	ENST00000411767	ENST00000295898		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000316707	ENST00000473559		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000316707	ENST00000503001		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-3UTR	ENST00000316707	ENST00000295898		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000511467	ENST00000473559		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000511467	ENST00000503001		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-3UTR	ENST00000511467	ENST00000295898		TCGA	LD	CESC	TCGA-VS-A8QC-01A	PTPN13	chr4	87656899	+	C4orf36	chr4	87797596	-
5CDS-intron	ENST00000378372	ENST00000323327		TCGA	LD	CESC	TCGA-VS-A8QF-01A	HSPA14	chr10	14891810	+	C10orf67	chr10	23493184	-
intron-intron	ENST00000493863	ENST00000323327		TCGA	LD	CESC	TCGA-VS-A8QF-01A	HSPA14	chr10	14891810	+	C10orf67	chr10	23493184	-
intron-intron	ENST00000437161	ENST00000323327		TCGA	LD	CESC	TCGA-VS-A8QF-01A	HSPA14	chr10	14891810	+	C10orf67	chr10	23493184	-
5UTR-3CDS	ENST00000372990	ENST00000325006		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000372990	ENST00000446544		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000372990	ENST00000531335		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000372990	ENST00000474594		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000372990	ENST00000446212		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000372990	ENST00000490911		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-intron	ENST00000372990	ENST00000472554		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000289248	ENST00000325006		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000289248	ENST00000446544		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000289248	ENST00000531335		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000289248	ENST00000474594		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000289248	ENST00000446212		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000289248	ENST00000490911		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-intron	ENST00000289248	ENST00000472554		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000538156	ENST00000325006		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000538156	ENST00000446544		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000538156	ENST00000531335		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000538156	ENST00000474594		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000538156	ENST00000446212		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000538156	ENST00000490911		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-intron	ENST00000538156	ENST00000472554		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000372985	ENST00000325006		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000372985	ENST00000446544		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000372985	ENST00000531335		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000372985	ENST00000474594		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000372985	ENST00000446212		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-3CDS	ENST00000372985	ENST00000490911		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
intron-intron	ENST00000372985	ENST00000472554		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000540558	ENST00000325006		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000540558	ENST00000446544		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000540558	ENST00000531335		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000540558	ENST00000474594		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000540558	ENST00000446212		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-3CDS	ENST00000540558	ENST00000490911		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5UTR-intron	ENST00000540558	ENST00000472554		TCGA	LD	CESC	TCGA-VS-A8QF-01A	RHBDL2	chr1	39407354	-	AHCYL2	chr7	129062681	+
5CDS-intron	ENST00000380377	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000380377	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000380377	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000380377	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000306388	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000306388	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000306388	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000306388	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000520361	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000520361	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000520361	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000520361	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000518338	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000518338	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000518338	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000518338	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000522370	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000522370	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000522370	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000522370	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000520039	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000520039	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000520039	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000520039	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000517679	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000517679	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000517679	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-intron	ENST00000517679	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000517881	ENST00000512033		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000517881	ENST00000296679		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000517881	ENST00000414719		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
intron-intron	ENST00000517881	ENST00000507029		TCGA	LD	CESC	TCGA-VS-A8QF-01A	TBCA	chr5	77004067	-	WDR41	chr5	76836361	-
5CDS-5UTR	ENST00000297423	ENST00000276570		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
5CDS-3UTR	ENST00000297423	ENST00000519330		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
5CDS-5UTR	ENST00000518074	ENST00000276570		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
5CDS-3UTR	ENST00000518074	ENST00000519330		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
5CDS-5UTR	ENST00000541342	ENST00000276570		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
5CDS-3UTR	ENST00000541342	ENST00000519330		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
3UTR-5UTR	ENST00000521214	ENST00000276570		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
3UTR-3UTR	ENST00000521214	ENST00000519330		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
intron-5UTR	ENST00000517693	ENST00000276570		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
intron-3UTR	ENST00000517693	ENST00000519330		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
intron-5UTR	ENST00000518060	ENST00000276570		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
intron-3UTR	ENST00000518060	ENST00000519330		TCGA	LD	CESC	TCGA-VS-A94W-01A	SPIDR	chr8	48206619	+	DNAJC5B	chr8	66955723	+
In-frame	ENST00000291041	ENST00000415766		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
Frame-shit	ENST00000291041	ENST00000561639		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
Frame-shit	ENST00000291041	ENST00000388833		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
5CDS-3UTR	ENST00000291041	ENST00000562321		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
intron-3CDS	ENST00000575198	ENST00000415766		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
intron-3CDS	ENST00000575198	ENST00000561639		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
intron-3CDS	ENST00000575198	ENST00000388833		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
intron-3UTR	ENST00000575198	ENST00000562321		TCGA	LD	CESC	TCGA-VS-A94X-01A	PSKH1	chr16	67943609	+	TSNAXIP1	chr16	67855002	+
5CDS-intron	ENST00000418919	ENST00000542120		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000418919	ENST00000229088		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-3UTR	ENST00000418919	ENST00000456757		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000418919	ENST00000539867		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000258145	ENST00000542120		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000258145	ENST00000229088		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-3UTR	ENST00000258145	ENST00000456757		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000258145	ENST00000539867		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000543646	ENST00000542120		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000543646	ENST00000229088		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-3UTR	ENST00000543646	ENST00000456757		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000543646	ENST00000539867		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000542058	ENST00000542120		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000542058	ENST00000229088		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-3UTR	ENST00000542058	ENST00000456757		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
5CDS-intron	ENST00000542058	ENST00000539867		TCGA	LD	CESC	TCGA-VS-A94Y-01A	GNS	chr12	65138589	-	TBC1D30	chr12	65212236	+
intron-intron	ENST00000281405	ENST00000304031		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-3UTR	ENST00000281405	ENST00000402541		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-intron	ENST00000281405	ENST00000406618		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-intron	ENST00000345530	ENST00000304031		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-3UTR	ENST00000345530	ENST00000402541		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-intron	ENST00000345530	ENST00000406618		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-intron	ENST00000416055	ENST00000304031		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-3UTR	ENST00000416055	ENST00000402541		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
intron-intron	ENST00000416055	ENST00000406618		TCGA	LD	CESC	TCGA-VS-A94Y-01A	WDR35	chr2	20151505	-	HS1BP3	chr2	20834733	-
5CDS-5UTR	ENST00000368874	ENST00000368868		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368874	ENST00000447402		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368874	ENST00000426705		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368874	ENST00000435071		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368874	ENST00000473693		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000271657	ENST00000368868		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000271657	ENST00000447402		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000271657	ENST00000426705		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000271657	ENST00000435071		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000271657	ENST00000473693		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368875	ENST00000368868		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368875	ENST00000447402		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368875	ENST00000426705		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368875	ENST00000435071		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368875	ENST00000473693		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368873	ENST00000368868		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368873	ENST00000447402		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368873	ENST00000426705		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368873	ENST00000435071		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368873	ENST00000473693		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
intron-5UTR	ENST00000529142	ENST00000368868		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
intron-5UTR	ENST00000529142	ENST00000447402		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
intron-5UTR	ENST00000529142	ENST00000426705		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
intron-5UTR	ENST00000529142	ENST00000435071		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
intron-5UTR	ENST00000529142	ENST00000473693		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368872	ENST00000368868		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368872	ENST00000447402		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368872	ENST00000426705		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368872	ENST00000435071		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
5CDS-5UTR	ENST00000368872	ENST00000473693		TCGA	LD	CESC	TCGA-VS-A950-01A	PI4KB	chr1	151288049	-	SELENBP1	chr1	151345174	-
In-frame	ENST00000566620	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000566620	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000566620	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
Frame-shit	ENST00000268613	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
Frame-shit	ENST00000268613	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000268613	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000565636	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000565636	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000565636	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000431540	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000431540	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000431540	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000428848	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000428848	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000428848	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000567445	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000567445	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000567445	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000446376	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
In-frame	ENST00000446376	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000446376	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
intron-3CDS	ENST00000569454	ENST00000283033		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
intron-3CDS	ENST00000569454	ENST00000356957		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
intron-intron	ENST00000569454	ENST00000570917		TCGA	LD	CESC	TCGA-VS-A953-01A	CDH13	chr16	82660742	+	TXNDC11	chr16	11785938	-
5CDS-intron	ENST00000394071	ENST00000554546		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000356296		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000557597		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000555238		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000355058		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000359560		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000555394		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000454166		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000544991		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000560335		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000555738		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000559312		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000554521		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000535282		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000556600		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000394071	ENST00000556772		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000554546		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000356296		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000557597		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000555238		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000355058		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000359560		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000555394		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000454166		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000544991		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000560335		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000555738		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000559312		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000554521		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000535282		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000556600		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
5CDS-intron	ENST00000286523	ENST00000556772		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000554546		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000356296		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000557597		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000555238		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000355058		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000359560		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000555394		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000454166		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000544991		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000560335		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000555738		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000559312		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000554521		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000535282		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000556600		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000486739	ENST00000556772		TCGA	LD	CESC	TCGA-VS-A953-01A	ELMSAN1	chr14	74203701	-	NUMB	chr14	73926011	-
intron-intron	ENST00000345057	ENST00000278795		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000345057	ENST00000305958		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000345057	ENST00000339123		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000345057	ENST00000484515		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000345057	ENST00000346595		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000345057	ENST00000379460		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000486556	ENST00000278795		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000486556	ENST00000305958		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000486556	ENST00000339123		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000486556	ENST00000484515		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000486556	ENST00000346595		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000486556	ENST00000379460		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000566104	ENST00000278795		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000566104	ENST00000305958		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000566104	ENST00000339123		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000566104	ENST00000484515		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000566104	ENST00000346595		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
intron-intron	ENST00000566104	ENST00000379460		TCGA	LD	CESC	TCGA-VS-A953-01A	TRADD	chr16	67188359	-	SMOX	chr20	4101627	+
3UTR-3CDS	ENST00000291041	ENST00000358514		TCGA	LD	CESC	TCGA-VS-A959-01A	PSKH1	chr16	67961667	+	PSMB10	chr16	67969340	-
intron-3CDS	ENST00000575198	ENST00000358514		TCGA	LD	CESC	TCGA-VS-A959-01A	PSKH1	chr16	67961667	+	PSMB10	chr16	67969340	-
5CDS-5UTR	ENST00000348165	ENST00000355848		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000348165	ENST00000407324		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000348165	ENST00000410067		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000348165	ENST00000409302		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000348165	ENST00000470189		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000389103	ENST00000355848		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000389103	ENST00000407324		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000389103	ENST00000410067		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000389103	ENST00000409302		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000389103	ENST00000470189		TCGA	LD	CESC	TCGA-VS-A959-01A	UBE3C	chr7	156976723	+	C1D	chr2	68274451	-
Frame-shit	ENST00000308420	ENST00000381573		TCGA	LD	CESC	TCGA-VS-A9U7-01A	RLN2	chr9	5304370	-	CD274	chr9	5462834	+
Frame-shit	ENST00000308420	ENST00000381577		TCGA	LD	CESC	TCGA-VS-A9U7-01A	RLN2	chr9	5304370	-	CD274	chr9	5462834	+
5CDS-3UTR	ENST00000308420	ENST00000498261		TCGA	LD	CESC	TCGA-VS-A9U7-01A	RLN2	chr9	5304370	-	CD274	chr9	5462834	+
Frame-shit	ENST00000381627	ENST00000381573		TCGA	LD	CESC	TCGA-VS-A9U7-01A	RLN2	chr9	5304370	-	CD274	chr9	5462834	+
Frame-shit	ENST00000381627	ENST00000381577		TCGA	LD	CESC	TCGA-VS-A9U7-01A	RLN2	chr9	5304370	-	CD274	chr9	5462834	+
5CDS-3UTR	ENST00000381627	ENST00000498261		TCGA	LD	CESC	TCGA-VS-A9U7-01A	RLN2	chr9	5304370	-	CD274	chr9	5462834	+
Frame-shit	ENST00000297268	ENST00000532636		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
Frame-shit	ENST00000297268	ENST00000533540		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
Frame-shit	ENST00000297268	ENST00000453788		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
Frame-shit	ENST00000297268	ENST00000534624		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
In-frame	ENST00000297268	ENST00000227378		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
5CDS-intron	ENST00000297268	ENST00000534319		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
5CDS-intron	ENST00000297268	ENST00000526110		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
5CDS-intron	ENST00000297268	ENST00000526862		TCGA	LD	CESC	TCGA-VS-A9UH-01A	COL1A2	chr7	94058742	+	HSPA8	chr11	122931966	-
3UTR-intron	ENST00000472200	ENST00000484501		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
3UTR-intron	ENST00000472200	ENST00000329582		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
3UTR-5UTR	ENST00000472200	ENST00000309741		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
5UTR-intron	ENST00000446465	ENST00000484501		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
5UTR-intron	ENST00000446465	ENST00000329582		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
5UTR-5UTR	ENST00000446465	ENST00000309741		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000393079	ENST00000484501		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000393079	ENST00000329582		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
intron-5UTR	ENST00000393079	ENST00000309741		TCGA	LD	CESC	TCGA-VS-A9UH-01A	SLC35G2	chr3	136538470	+	IL20RB	chr3	136699308	+
5UTR-3UTR	ENST00000532855	ENST00000525739		TCGA	LD	CESC	TCGA-VS-A9UO-01A	MMP12	chr11	102737046	-	WTAPP1	chr11	102701463	+
Frame-shit	ENST00000263694	ENST00000265379		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
Frame-shit	ENST00000263694	ENST00000432398		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
5UTR-3CDS	ENST00000489853	ENST00000265379		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
5UTR-3CDS	ENST00000489853	ENST00000432398		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
intron-3CDS	ENST00000373720	ENST00000265379		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
intron-3CDS	ENST00000373720	ENST00000432398		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
Frame-shit	ENST00000446633	ENST00000265379		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
Frame-shit	ENST00000446633	ENST00000432398		TCGA	LD	CESC	TCGA-VS-A9UO-01A	SNRNP40	chr1	31754221	-	COL6A5	chr3	130187639	+
3UTR-5UTR	ENST00000525739	ENST00000532855		TCGA	LD	CESC	TCGA-VS-A9UO-01A	WTAPP1	chr11	102703637	+	MMP12	chr11	102738799	-
5CDS-intron	ENST00000357575	ENST00000568911		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PQLC1	chr18	77710724	-	RBFADN	chr18	77837589	+
5CDS-intron	ENST00000397778	ENST00000568911		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PQLC1	chr18	77710724	-	RBFADN	chr18	77837589	+
5UTR-intron	ENST00000409073	ENST00000568911		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PQLC1	chr18	77710724	-	RBFADN	chr18	77837589	+
5CDS-intron	ENST00000590381	ENST00000568911		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PQLC1	chr18	77710724	-	RBFADN	chr18	77837589	+
intron-intron	ENST00000590895	ENST00000568911		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PQLC1	chr18	77710724	-	RBFADN	chr18	77837589	+
intron-3CDS	ENST00000540871	ENST00000396526		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
intron-3CDS	ENST00000540871	ENST00000396534		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
intron-3CDS	ENST00000540871	ENST00000362031		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
intron-3CDS	ENST00000540871	ENST00000355110		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000261479	ENST00000396526		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000261479	ENST00000396534		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000261479	ENST00000362031		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000261479	ENST00000355110		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000553809	ENST00000396526		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000553809	ENST00000396534		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000553809	ENST00000362031		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000553809	ENST00000355110		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
5UTR-3CDS	ENST00000555764	ENST00000396526		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
5UTR-3CDS	ENST00000555764	ENST00000396534		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
5UTR-3CDS	ENST00000555764	ENST00000362031		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
5UTR-3CDS	ENST00000555764	ENST00000355110		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000556506	ENST00000396526		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000556506	ENST00000396534		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000556506	ENST00000362031		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000556506	ENST00000355110		TCGA	LD	CESC	TCGA-VS-A9UP-01A	PSMA6	chr14	35761758	+	SNX6	chr14	35072677	-
Frame-shit	ENST00000264657	ENST00000225916		TCGA	LD	CESC	TCGA-VS-A9UP-01A	STAT3	chr17	40500407	-	KAT2A	chr17	40272847	-
In-frame	ENST00000585517	ENST00000225916		TCGA	LD	CESC	TCGA-VS-A9UP-01A	STAT3	chr17	40500407	-	KAT2A	chr17	40272847	-
intron-3CDS	ENST00000389272	ENST00000225916		TCGA	LD	CESC	TCGA-VS-A9UP-01A	STAT3	chr17	40500407	-	KAT2A	chr17	40272847	-
In-frame	ENST00000588969	ENST00000225916		TCGA	LD	CESC	TCGA-VS-A9UP-01A	STAT3	chr17	40500407	-	KAT2A	chr17	40272847	-
In-frame	ENST00000404395	ENST00000225916		TCGA	LD	CESC	TCGA-VS-A9UP-01A	STAT3	chr17	40500407	-	KAT2A	chr17	40272847	-
intron-3CDS	ENST00000590776	ENST00000225916		TCGA	LD	CESC	TCGA-VS-A9UP-01A	STAT3	chr17	40500407	-	KAT2A	chr17	40272847	-
Frame-shit	ENST00000374142	ENST00000324856		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
Frame-shit	ENST00000374142	ENST00000457599		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
Frame-shit	ENST00000374142	ENST00000374152		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
5CDS-intron	ENST00000374142	ENST00000540690		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
intron-3CDS	ENST00000478902	ENST00000324856		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
intron-3CDS	ENST00000478902	ENST00000457599		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
intron-3CDS	ENST00000478902	ENST00000374152		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
intron-intron	ENST00000478902	ENST00000540690		TCGA	LD	CESC	TCGA-VS-A9UP-01A	ZDHHC18	chr1	27153630	+	ARID1A	chr1	27098991	+
5CDS-3UTR	ENST00000361837	ENST00000397066		TCGA	LD	CESC	TCGA-VS-A9UT-01A	C16orf59	chr16	2512476	+	CCNF	chr16	2508158	+
5CDS-3UTR	ENST00000569496	ENST00000397066		TCGA	LD	CESC	TCGA-VS-A9UT-01A	C16orf59	chr16	2512476	+	CCNF	chr16	2508158	+
5CDS-3UTR	ENST00000563531	ENST00000397066		TCGA	LD	CESC	TCGA-VS-A9UT-01A	C16orf59	chr16	2512476	+	CCNF	chr16	2508158	+
5CDS-3UTR	ENST00000483320	ENST00000397066		TCGA	LD	CESC	TCGA-VS-A9UT-01A	C16orf59	chr16	2512476	+	CCNF	chr16	2508158	+
5CDS-5UTR	ENST00000264018	ENST00000525102		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000264018	ENST00000357590		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000264018	ENST00000545985		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000264018	ENST00000538950		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000264018	ENST00000330775		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000534980	ENST00000525102		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000534980	ENST00000357590		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000534980	ENST00000545985		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000534980	ENST00000538950		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000534980	ENST00000330775		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000526070	ENST00000525102		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000526070	ENST00000357590		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000526070	ENST00000545985		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000526070	ENST00000538950		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-5UTR	ENST00000526070	ENST00000330775		TCGA	LD	CESC	TCGA-VS-A9UT-01A	DDX6	chr11	118650341	-	SLC37A4	chr11	118900274	-
5CDS-intron	ENST00000296933	ENST00000518527		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000296933	ENST00000377360		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000296933	ENST00000328939		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000296933	ENST00000390656		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000296933	ENST00000520740		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000296933	ENST00000434108		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000296933	ENST00000411494		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265094	ENST00000518527		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265094	ENST00000377360		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265094	ENST00000328939		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000265094	ENST00000390656		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265094	ENST00000520740		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265094	ENST00000434108		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000265094	ENST00000411494		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393802	ENST00000518527		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393802	ENST00000377360		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393802	ENST00000328939		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393802	ENST00000390656		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000393802	ENST00000520740		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000393802	ENST00000434108		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000393802	ENST00000411494		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000425623	ENST00000518527		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000425623	ENST00000377360		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000425623	ENST00000328939		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000425623	ENST00000390656		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000425623	ENST00000520740		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000425623	ENST00000434108		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000425623	ENST00000411494		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000522891	ENST00000518527		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000522891	ENST00000377360		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000522891	ENST00000328939		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-intron	ENST00000522891	ENST00000390656		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000522891	ENST00000520740		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000522891	ENST00000434108		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000522891	ENST00000411494		TCGA	LD	CESC	TCGA-VS-A9UT-01A	FBXW11	chr5	171433462	-	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000200453	ENST00000270221		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP1R15A	chr19	49378155	+	EMP3	chr19	48825071	+
5CDS-intron	ENST00000200453	ENST00000596315		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP1R15A	chr19	49378155	+	EMP3	chr19	48825071	+
5CDS-intron	ENST00000200453	ENST00000597279		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP1R15A	chr19	49378155	+	EMP3	chr19	48825071	+
5CDS-5UTR	ENST00000322088	ENST00000598409		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000322088	ENST00000600547		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000444322	ENST00000598409		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000444322	ENST00000600547		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000477989	ENST00000598409		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000477989	ENST00000600547		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000462990	ENST00000598409		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000462990	ENST00000600547		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000473455	ENST00000598409		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000473455	ENST00000600547		TCGA	LD	CESC	TCGA-VS-A9UT-01A	PPP2R1A	chr19	52693427	+	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000420908	ENST00000448803		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-5UTR	ENST00000420908	ENST00000546148		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-5UTR	ENST00000420908	ENST00000334141		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-intron	ENST00000420908	ENST00000358472		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-5UTR	ENST00000420908	ENST00000379358		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-5UTR	ENST00000420908	ENST00000327179		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-intron	ENST00000420908	ENST00000541040		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-intron	ENST00000420908	ENST00000538076		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-intron	ENST00000420908	ENST00000485222		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
intron-intron	ENST00000420908	ENST00000303310		TCGA	LD	CESC	TCGA-VS-A9UT-01A	UBE2Q2P2	chr15	83073482	+	ZSCAN2	chr15	85147051	+
In-frame	ENST00000296161	ENST00000232125		TCGA	LD	CESC	TCGA-VS-A9UV-01A	DTX3L	chr3	122289519	+	FAM162A	chr3	122126128	+
In-frame	ENST00000296161	ENST00000477892		TCGA	LD	CESC	TCGA-VS-A9UV-01A	DTX3L	chr3	122289519	+	FAM162A	chr3	122126128	+
Frame-shit	ENST00000296161	ENST00000469967		TCGA	LD	CESC	TCGA-VS-A9UV-01A	DTX3L	chr3	122289519	+	FAM162A	chr3	122126128	+
In-frame	ENST00000383661	ENST00000232125		TCGA	LD	CESC	TCGA-VS-A9UV-01A	DTX3L	chr3	122289519	+	FAM162A	chr3	122126128	+
In-frame	ENST00000383661	ENST00000477892		TCGA	LD	CESC	TCGA-VS-A9UV-01A	DTX3L	chr3	122289519	+	FAM162A	chr3	122126128	+
Frame-shit	ENST00000383661	ENST00000469967		TCGA	LD	CESC	TCGA-VS-A9UV-01A	DTX3L	chr3	122289519	+	FAM162A	chr3	122126128	+
5CDS-intron	ENST00000335255	ENST00000433765		TCGA	LD	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	CHRM4	chr11	46408136	-
intron-intron	ENST00000529652	ENST00000433765		TCGA	LD	CESC	TCGA-VS-A9V0-01A	FOXK2	chr17	80478183	+	CHRM4	chr11	46408136	-
Frame-shit	ENST00000313056	ENST00000591776		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
Frame-shit	ENST00000313056	ENST00000469257		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
5CDS-3UTR	ENST00000313056	ENST00000310837		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
Frame-shit	ENST00000329197	ENST00000591776		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
Frame-shit	ENST00000329197	ENST00000469257		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
5CDS-3UTR	ENST00000329197	ENST00000310837		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
intron-3CDS	ENST00000578287	ENST00000591776		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
intron-3CDS	ENST00000578287	ENST00000469257		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
intron-3UTR	ENST00000578287	ENST00000310837		TCGA	LD	CESC	TCGA-VS-A9V0-01A	OGFOD3	chr17	80369331	-	EIF1	chr17	39847034	+
5CDS-5UTR	ENST00000262741	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000262741	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000262741	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000262741	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000372006	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000372006	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000372006	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000372006	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000340332	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000340332	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000340332	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000340332	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000420542	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000420542	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000420542	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000420542	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000354242	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000354242	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000354242	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000354242	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000540385	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000540385	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000540385	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000540385	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423209	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423209	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423209	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-5UTR	ENST00000423209	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000488808	ENST00000319928		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000488808	ENST00000271139		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000488808	ENST00000371940		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
intron-5UTR	ENST00000488808	ENST00000477318		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PIK3R3	chr1	46543187	-	MOB3C	chr1	47079043	-
5CDS-intron	ENST00000369110	ENST00000495032		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PREP	chr6	105845728	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000369110	ENST00000434063		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PREP	chr6	105845728	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000369110	ENST00000429611		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PREP	chr6	105845728	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000369110	ENST00000425358		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PREP	chr6	105845728	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000369110	ENST00000428939		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PREP	chr6	105845728	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000369110	ENST00000593300		TCGA	LD	CESC	TCGA-VS-A9V0-01A	PREP	chr6	105845728	-	HOTAIRM1	chr7	27139398	+
Frame-shit	ENST00000296370	ENST00000258761		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
Frame-shit	ENST00000296370	ENST00000433922		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000296370	ENST00000432311		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
5CDS-3UTR	ENST00000296370	ENST00000452975		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
5CDS-5UTR	ENST00000296370	ENST00000405202		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
5CDS-intron	ENST00000296370	ENST00000407633		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-3CDS	ENST00000513778	ENST00000258761		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-3CDS	ENST00000513778	ENST00000433922		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-3UTR	ENST00000513778	ENST00000432311		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-3UTR	ENST00000513778	ENST00000452975		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-5UTR	ENST00000513778	ENST00000405202		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-intron	ENST00000513778	ENST00000407633		TCGA	LD	CESC	TCGA-VS-A9V0-01A	S100P	chr4	6695797	+	BZW2	chr7	16714037	+
intron-intron	ENST00000458258	ENST00000604609		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
intron-intron	ENST00000458258	ENST00000252809		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
5CDS-intron	ENST00000334318	ENST00000604609		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
5CDS-intron	ENST00000334318	ENST00000252809		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
5CDS-intron	ENST00000374257	ENST00000604609		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
5CDS-intron	ENST00000374257	ENST00000252809		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
intron-intron	ENST00000374255	ENST00000604609		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
intron-intron	ENST00000374255	ENST00000252809		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
5CDS-intron	ENST00000343327	ENST00000604609		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
5CDS-intron	ENST00000343327	ENST00000252809		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
intron-intron	ENST00000487997	ENST00000604609		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
intron-intron	ENST00000487997	ENST00000252809		TCGA	LD	CESC	TCGA-VS-A9V1-01A	PTBP3	chr9	115060112	-	GDF15	chr19	18493123	+
In-frame	ENST00000225777	ENST00000318430		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000225777	ENST00000589691		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
5CDS-intron	ENST00000225777	ENST00000591144		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000585591	ENST00000318430		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000585591	ENST00000589691		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
5CDS-intron	ENST00000585591	ENST00000591144		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000589711	ENST00000318430		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000589711	ENST00000589691		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
5CDS-intron	ENST00000589711	ENST00000591144		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000588282	ENST00000318430		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
In-frame	ENST00000588282	ENST00000589691		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
5CDS-intron	ENST00000588282	ENST00000591144		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
intron-3CDS	ENST00000590201	ENST00000318430		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
intron-3CDS	ENST00000590201	ENST00000589691		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
intron-intron	ENST00000590201	ENST00000591144		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
intron-3CDS	ENST00000592456	ENST00000318430		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
intron-3CDS	ENST00000592456	ENST00000589691		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
intron-intron	ENST00000592456	ENST00000591144		TCGA	LD	CESC	TCGA-VS-A9V5-01A	SYNGR2	chr17	76164796	+	TMC8	chr17	76130475	+
Frame-shit	ENST00000313288	ENST00000481110		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
Frame-shit	ENST00000313288	ENST00000440486		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
Frame-shit	ENST00000313288	ENST00000412135		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
Frame-shit	ENST00000313288	ENST00000340107		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
Frame-shit	ENST00000313288	ENST00000260795		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
Frame-shit	ENST00000313288	ENST00000352904		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
5CDS-intron	ENST00000313288	ENST00000474521		TCGA	LD	CESC	TCGA-WL-A834-01A	TACC3	chr4	1737559	+	FGFR3	chr4	1803092	+
Frame-shit	ENST00000313899	ENST00000319540		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000313899	ENST00000273908		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
In-frame	ENST00000313899	ENST00000282709		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000353341	ENST00000319540		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000353341	ENST00000273908		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
In-frame	ENST00000353341	ENST00000282709		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000543098	ENST00000319540		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000543098	ENST00000273908		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
In-frame	ENST00000543098	ENST00000282709		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000352301	ENST00000319540		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000352301	ENST00000273908		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
In-frame	ENST00000352301	ENST00000282709		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000508119	ENST00000319540		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000508119	ENST00000273908		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000508119	ENST00000282709		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000541060	ENST00000319540		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000541060	ENST00000273908		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000541060	ENST00000282709		TCGA	LD	CESC	TCGA-ZJ-A8QO-01A	HNRNPD	chr4	83294599	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000295688	ENST00000361170		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000295688	ENST00000498755		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000368259	ENST00000361170		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000368259	ENST00000498755		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
In-frame	ENST00000368261	ENST00000361170		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000368261	ENST00000498755		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
Frame-shit	ENST00000472765	ENST00000361170		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
5CDS-intron	ENST00000472765	ENST00000498755		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
intron-3CDS	ENST00000368256	ENST00000361170		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
intron-intron	ENST00000368256	ENST00000498755		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	CCT3	chr1	156280349	-	IQGAP3	chr1	156510708	-
intron-3CDS	ENST00000458477	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000458477	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000458477	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000458477	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
Frame-shit	ENST00000228307	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000228307	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000228307	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000228307	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
Frame-shit	ENST00000424649	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000424649	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000424649	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000424649	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-3CDS	ENST00000397506	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000397506	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000397506	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000397506	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-3CDS	ENST00000536957	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000536957	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000536957	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000536957	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
Frame-shit	ENST00000267257	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000267257	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000267257	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
5CDS-intron	ENST00000267257	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-3CDS	ENST00000538144	ENST00000229340		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000538144	ENST00000432953		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000538144	ENST00000534951		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-intron	ENST00000538144	ENST00000543364		TCGA	LD	CESC	TCGA-ZJ-A8QQ-01A	PXN	chr12	120703419	-	RAB35	chr12	120546270	-
intron-3CDS	ENST00000563580	ENST00000393799		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000530427		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000393800		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000534534		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000524845		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000265637		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000524904		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000393801		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000265636		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000529710		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
intron-intron	ENST00000563580	ENST00000527403		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000564910	ENST00000393799		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000530427		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000393800		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000534534		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000524845		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000265637		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000524904		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000393801		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000265636		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000529710		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000564910	ENST00000527403		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000261890	ENST00000393799		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000530427		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000393800		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000534534		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000524845		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000265637		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000524904		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000393801		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000265636		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000529710		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000261890	ENST00000527403		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000565075	ENST00000393799		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000530427		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000393800		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000534534		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000524845		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000265637		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000524904		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000393801		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000265636		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000529710		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000565075	ENST00000527403		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000435304	ENST00000393799		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000530427		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000393800		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000534534		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000524845		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000265637		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000524904		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000393801		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000265636		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000529710		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000435304	ENST00000527403		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000569896	ENST00000393799		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000530427		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000393800		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000534534		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000524845		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000265637		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000524904		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000393801		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000265636		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000529710		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000569896	ENST00000527403		TCGA	LD	CESC	TCGA-ZJ-A8QR-01A	RAB11A	chr15	66161963	+	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000379942	ENST00000373652		TCGA	LD	CESC	TCGA-ZJ-AAX4-01A	PHKA2	chrX	18923876	-	FBXO36	chr2	230840957	+
Frame-shit	ENST00000379942	ENST00000283946		TCGA	LD	CESC	TCGA-ZJ-AAX4-01A	PHKA2	chrX	18923876	-	FBXO36	chr2	230840957	+
Frame-shit	ENST00000379942	ENST00000409992		TCGA	LD	CESC	TCGA-ZJ-AAX4-01A	PHKA2	chrX	18923876	-	FBXO36	chr2	230840957	+
intron-3CDS	ENST00000481718	ENST00000373652		TCGA	LD	CESC	TCGA-ZJ-AAX4-01A	PHKA2	chrX	18923876	-	FBXO36	chr2	230840957	+
intron-3CDS	ENST00000481718	ENST00000283946		TCGA	LD	CESC	TCGA-ZJ-AAX4-01A	PHKA2	chrX	18923876	-	FBXO36	chr2	230840957	+
intron-3CDS	ENST00000481718	ENST00000409992		TCGA	LD	CESC	TCGA-ZJ-AAX4-01A	PHKA2	chrX	18923876	-	FBXO36	chr2	230840957	+
5UTR-intron	ENST00000318789	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318789	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318789	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318789	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000475937	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000475937	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000475937	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000475937	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000493089	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000493089	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000493089	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000493089	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000484350	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000484350	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000484350	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000484350	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318779	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318779	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318779	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5UTR-intron	ENST00000318779	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000491238	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000491238	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000491238	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000491238	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000498215	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000498215	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000498215	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000498215	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000468577	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000468577	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000468577	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000468577	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000472382	ENST00000415609		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000472382	ENST00000349511		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000472382	ENST00000361055		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
intron-intron	ENST00000472382	ENST00000540295		TCGA	LD	CESC	TCGA-ZJ-AAXB-01A	FOXP1	chr3	71542577	-	UBA3	chr3	69129304	-
5CDS-3UTR	ENST00000263238	ENST00000395996		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5CDS-3UTR	ENST00000263238	ENST00000358544		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5CDS-3UTR	ENST00000263238	ENST00000357162		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5CDS-intron	ENST00000263238	ENST00000355155		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5CDS-intron	ENST00000263238	ENST00000441350		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5CDS-intron	ENST00000263238	ENST00000521932		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5UTR-3UTR	ENST00000536059	ENST00000395996		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5UTR-3UTR	ENST00000536059	ENST00000358544		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5UTR-3UTR	ENST00000536059	ENST00000357162		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5UTR-intron	ENST00000536059	ENST00000355155		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5UTR-intron	ENST00000536059	ENST00000441350		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
5UTR-intron	ENST00000536059	ENST00000521932		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
intron-3UTR	ENST00000535589	ENST00000395996		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
intron-3UTR	ENST00000535589	ENST00000358544		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
intron-3UTR	ENST00000535589	ENST00000357162		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
intron-intron	ENST00000535589	ENST00000355155		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
intron-intron	ENST00000535589	ENST00000441350		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
intron-intron	ENST00000535589	ENST00000521932		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	ACTR3	chr2	114647900	+	VPS13B	chr8	100587886	+
In-frame	ENST00000372318	ENST00000262915		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
In-frame	ENST00000372318	ENST00000372375		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
In-frame	ENST00000372318	ENST00000351035		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372374		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000353126		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000545417		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000330208		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000335430		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372377		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000361392		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000361400		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000347631		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000361812		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372362		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000531451		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372366		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372365		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372368		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000332628		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372372		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000531816		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000528371		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372369		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000531993		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000361746		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000533933		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000372367		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
5CDS-intron	ENST00000372318	ENST00000461375		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-3CDS	ENST00000479055	ENST00000262915		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-3CDS	ENST00000479055	ENST00000372375		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-3CDS	ENST00000479055	ENST00000351035		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372374		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000353126		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000545417		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000330208		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000335430		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372377		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000361392		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000361400		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000347631		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000361812		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372362		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000531451		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372366		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372365		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372368		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000332628		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372372		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000531816		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000528371		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372369		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000531993		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000361746		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000533933		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000372367		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-intron	ENST00000479055	ENST00000461375		TCGA	LD	CESC	TCGA-ZJ-AAXN-01A	CCDC24	chr1	44459636	+	ST3GAL3	chr1	44290403	+
3UTR-3CDS	ENST00000508198	ENST00000347580		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
3UTR-3CDS	ENST00000508198	ENST00000379853		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
3UTR-3CDS	ENST00000508198	ENST00000265708		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
3UTR-3CDS	ENST00000508198	ENST00000521880		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
3UTR-intron	ENST00000508198	ENST00000523181		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000435205	ENST00000347580		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000435205	ENST00000379853		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000435205	ENST00000265708		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000435205	ENST00000521880		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
5UTR-intron	ENST00000435205	ENST00000523181		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000505231	ENST00000347580		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000505231	ENST00000379853		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000505231	ENST00000265708		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000505231	ENST00000521880		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
intron-intron	ENST00000505231	ENST00000523181		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	FAM160A1	chr4	152330617	+	ADAM2	chr8	39627094	-
5CDS-5UTR	ENST00000376621	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000383450	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000441604	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000550904	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000428189	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000551708	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000437917	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000548423	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000383596	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000550942	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000454829	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000552589	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000417834	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
intron-5UTR	ENST00000551903	ENST00000332029		TCGA	LD	CESC	TCGA-ZJ-AB0I-01A	GNL1	chr6	30520244	-	SOCS1	chr16	11349385	-
5UTR-3CDS	ENST00000355831	ENST00000283243		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000355831	ENST00000392771		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-intron	ENST00000355831	ENST00000460710		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000343439	ENST00000283243		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000343439	ENST00000392771		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-intron	ENST00000343439	ENST00000460710		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000392782	ENST00000283243		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000392782	ENST00000392771		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-intron	ENST00000392782	ENST00000460710		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000392783	ENST00000283243		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000392783	ENST00000392771		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-intron	ENST00000392783	ENST00000460710		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000483316	ENST00000283243		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-3CDS	ENST00000483316	ENST00000392771		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
5UTR-intron	ENST00000483316	ENST00000460710		TCGA	RV	CHOL	TCGA-W5-AA30-01A	BAZ2B	chr2	160412334	-	PLA2R1	chr2	160885474	-
In-frame	ENST00000350638	ENST00000422223		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000350638	ENST00000380881		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000350638	ENST00000380880		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
5CDS-intron	ENST00000350638	ENST00000380894		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
5CDS-intron	ENST00000350638	ENST00000486223		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000379163	ENST00000422223		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000379163	ENST00000380881		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000379163	ENST00000380880		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
5CDS-intron	ENST00000379163	ENST00000380894		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
5CDS-intron	ENST00000379163	ENST00000486223		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000395934	ENST00000422223		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000395934	ENST00000380881		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
In-frame	ENST00000395934	ENST00000380880		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
5CDS-intron	ENST00000395934	ENST00000380894		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
5CDS-intron	ENST00000395934	ENST00000486223		TCGA	RV	CHOL	TCGA-ZU-A8S4-01A	ELP4	chr11	31625454	+	FREM1	chr9	14816869	-
Frame-shit	ENST00000540480	ENST00000443326		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000540480	ENST00000414585		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000540480	ENST00000540643		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000540480	ENST00000432498		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000540480	ENST00000443011		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000540480	ENST00000400289		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000540480	ENST00000400288		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
5CDS-intron	ENST00000540480	ENST00000474741		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000443326		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000414585		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000540643		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000432498		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000443011		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000400289		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000537664	ENST00000400288		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
5CDS-intron	ENST00000537664	ENST00000474741		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000443326		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000414585		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000540643		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000432498		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000443011		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000400289		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
Frame-shit	ENST00000476287	ENST00000400288		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
5CDS-intron	ENST00000476287	ENST00000474741		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000443326		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000414585		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000540643		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000432498		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000443011		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000400289		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000252510	ENST00000400288		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-intron	ENST00000252510	ENST00000474741		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000443326		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000414585		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000540643		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000432498		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000443011		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000400289		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-3CDS	ENST00000496635	ENST00000400288		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
intron-intron	ENST00000496635	ENST00000474741		TCGA	RV	CHOL	TCGA-W5-AA34-01A	FAM120B	chr6	170632347	+	SFI1	chr22	31942847	+
5CDS-intron	ENST00000261647	ENST00000250144		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TTC19	chr17	15903559	+	MMP28	chr17	34097331	-
5CDS-intron	ENST00000486880	ENST00000250144		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TTC19	chr17	15903559	+	MMP28	chr17	34097331	-
3UTR-intron	ENST00000497842	ENST00000250144		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TTC19	chr17	15903559	+	MMP28	chr17	34097331	-
Frame-shit	ENST00000323482	ENST00000360469		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000323482	ENST00000543233		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
Frame-shit	ENST00000432802	ENST00000360469		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000432802	ENST00000543233		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
Frame-shit	ENST00000376726	ENST00000360469		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000376726	ENST00000543233		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
intron-3CDS	ENST00000484396	ENST00000360469		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
intron-5UTR	ENST00000484396	ENST00000543233		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
intron-3CDS	ENST00000537502	ENST00000360469		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
intron-5UTR	ENST00000537502	ENST00000543233		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
intron-3CDS	ENST00000542618	ENST00000360469		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
intron-5UTR	ENST00000542618	ENST00000543233		TCGA	RV	CHOL	TCGA-3X-AAVE-01A	ACSS1	chr20	25028721	-	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000606080	ENST00000369042		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	FRK	chr6	116381131	-	BEND3	chr6	107420500	-
5CDS-5UTR	ENST00000606080	ENST00000429433		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	FRK	chr6	116381131	-	BEND3	chr6	107420500	-
intron-5UTR	ENST00000538210	ENST00000369042		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	FRK	chr6	116381131	-	BEND3	chr6	107420500	-
intron-5UTR	ENST00000538210	ENST00000429433		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	FRK	chr6	116381131	-	BEND3	chr6	107420500	-
In-frame	ENST00000344721	ENST00000366933		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
5CDS-3UTR	ENST00000344721	ENST00000471021		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
Frame-shit	ENST00000355292	ENST00000366933		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
5CDS-3UTR	ENST00000355292	ENST00000471021		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
Frame-shit	ENST00000358102	ENST00000366933		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
5CDS-3UTR	ENST00000358102	ENST00000471021		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
Frame-shit	ENST00000512865	ENST00000366933		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
5CDS-3UTR	ENST00000512865	ENST00000471021		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
Frame-shit	ENST00000511528	ENST00000366933		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
5CDS-3UTR	ENST00000511528	ENST00000471021		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
intron-3CDS	ENST00000503313	ENST00000366933		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
intron-3UTR	ENST00000503313	ENST00000471021		TCGA	RV	CHOL	TCGA-W5-AA2T-01A	NR3C2	chr4	149356256	-	SPATA17	chr1	218036116	+
Frame-shit	ENST00000027335	ENST00000336148		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000027335	ENST00000519348		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000027335	ENST00000297592		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
Frame-shit	ENST00000441892	ENST00000336148		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000441892	ENST00000519348		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000441892	ENST00000297592		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
Frame-shit	ENST00000450165	ENST00000336148		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000450165	ENST00000519348		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000450165	ENST00000297592		TCGA	RV	CHOL	TCGA-W5-AA38-01A	CDH17	chr8	95160972	-	RAD54B	chr8	95423543	-
In-frame	ENST00000261643	ENST00000421807		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000261643	ENST00000406424		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000261643	ENST00000320345		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000261643	ENST00000397335		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000261643	ENST00000542125		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000536205	ENST00000421807		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000536205	ENST00000406424		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000536205	ENST00000320345		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000536205	ENST00000397335		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000536205	ENST00000542125		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000537334	ENST00000421807		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000537334	ENST00000406424		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000537334	ENST00000320345		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000537334	ENST00000397335		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
In-frame	ENST00000537334	ENST00000542125		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
intron-3CDS	ENST00000429152	ENST00000421807		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
intron-3CDS	ENST00000429152	ENST00000406424		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
intron-3CDS	ENST00000429152	ENST00000320345		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
intron-3CDS	ENST00000429152	ENST00000397335		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
intron-3CDS	ENST00000429152	ENST00000542125		TCGA	RV	CHOL	TCGA-W5-AA31-01A	COX10	chr17	14063264	+	INPP5K	chr17	1401416	-
intron-3CDS	ENST00000534836	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000534836	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000534836	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000534836	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000534836	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000534836	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000534836	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000534836	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000541045	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000541045	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000541045	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-3CDS	ENST00000541045	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000541045	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000541045	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000541045	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
intron-intron	ENST00000541045	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000536908	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000536908	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000536908	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000536908	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000536908	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000536908	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000536908	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000536908	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000378738	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000378738	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000378738	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000378738	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000378738	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000378738	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000378738	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000378738	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394832	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394832	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394832	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394832	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394832	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394832	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394832	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394832	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000320856	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000320856	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000320856	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000320856	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000320856	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000320856	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000320856	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000320856	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394835	ENST00000353139		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394835	ENST00000360679		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394835	ENST00000394406		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
In-frame	ENST00000394835	ENST00000335166		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394835	ENST00000416895		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394835	ENST00000361253		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394835	ENST00000588142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
5CDS-intron	ENST00000394835	ENST00000589665		TCGA	RV	CHOL	TCGA-W5-AA31-01A	EFCAB5	chr17	28296385	+	ACACA	chr17	35564714	-
Frame-shit	ENST00000304478	ENST00000380183		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RNMTL1	chr17	691372	+	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000304478	ENST00000572022		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RNMTL1	chr17	691372	+	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000304478	ENST00000380173		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RNMTL1	chr17	691372	+	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000304478	ENST00000573359		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RNMTL1	chr17	691372	+	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000376020	ENST00000374690		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000376020	ENST00000513847		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000376020	ENST00000504326		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000376020	ENST00000396044		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000376020	ENST00000396043		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
Frame-shit	ENST00000289292	ENST00000374690		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000289292	ENST00000513847		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000289292	ENST00000504326		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000289292	ENST00000396044		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
5CDS-3UTR	ENST00000289292	ENST00000396043		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3CDS	ENST00000483955	ENST00000374690		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000483955	ENST00000513847		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000483955	ENST00000504326		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000483955	ENST00000396044		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000483955	ENST00000396043		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3CDS	ENST00000460112	ENST00000374690		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000460112	ENST00000513847		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000460112	ENST00000504326		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000460112	ENST00000396044		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
intron-3UTR	ENST00000460112	ENST00000396043		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	SHROOM4	chrX	50438786	-	AR	chrX	66905852	+
Frame-shit	ENST00000217233	ENST00000328041		TCGA	RV	CHOL	TCGA-3X-AAVB-01A	TRIB3	chr20	372223	+	SLC24A3	chr20	19496132	+
intron-3CDS	ENST00000485293	ENST00000328041		TCGA	RV	CHOL	TCGA-3X-AAVB-01A	TRIB3	chr20	372223	+	SLC24A3	chr20	19496132	+
Frame-shit	ENST00000422053	ENST00000328041		TCGA	RV	CHOL	TCGA-3X-AAVB-01A	TRIB3	chr20	372223	+	SLC24A3	chr20	19496132	+
Frame-shit	ENST00000409078	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000409078	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000409078	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000409078	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000409078	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000409078	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000409078	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000541859	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000541859	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000541859	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000541859	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000541859	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000541859	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000541859	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000541377	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000541377	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000541377	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000541377	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000541377	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000541377	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000541377	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000455322	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000455322	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000455322	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000455322	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000455322	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000455322	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000455322	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000397587	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000397587	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000397587	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000397587	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000397587	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000397587	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000397587	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000263710	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000263710	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000263710	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000263710	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000263710	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000263710	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
5CDS-intron	ENST00000263710	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000545861	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000545861	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000545861	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000545861	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000545861	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000545861	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000545861	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000430234	ENST00000402508		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000430234	ENST00000403359		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-3CDS	ENST00000430234	ENST00000316377		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000430234	ENST00000480038		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000430234	ENST00000378314		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000430234	ENST00000405808		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
intron-intron	ENST00000430234	ENST00000434523		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	CLASP1	chr2	122363277	-	FBXO11	chr2	48047595	-
Frame-shit	ENST00000377047	ENST00000377067		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	GPC6	chr13	93879869	+	GPC5	chr13	92797083	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	GPC6	chr13	93879869	+	GPC5	chr13	92797083	+
Frame-shit	ENST00000318217	ENST00000225893		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000318217	ENST00000561193		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000318217	ENST00000560016		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000318217	ENST00000427275		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
In-frame	ENST00000394649	ENST00000225893		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
In-frame	ENST00000394649	ENST00000561193		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
In-frame	ENST00000394649	ENST00000560016		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
In-frame	ENST00000394649	ENST00000427275		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000579584	ENST00000225893		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000579584	ENST00000561193		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000579584	ENST00000560016		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
Frame-shit	ENST00000579584	ENST00000427275		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000584232	ENST00000225893		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000584232	ENST00000561193		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000584232	ENST00000560016		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000584232	ENST00000427275		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000583621	ENST00000225893		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000583621	ENST00000561193		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000583621	ENST00000560016		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
intron-3CDS	ENST00000583621	ENST00000427275		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO1D	chr17	31048041	-	HNF1B	chr17	36065056	-
5CDS-intron	ENST00000377179	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
5CDS-intron	ENST00000377179	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
5UTR-intron	ENST00000483450	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
5UTR-intron	ENST00000483450	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000426120	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000426120	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000481554	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000481554	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000487312	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000487312	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000452316	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000452316	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000429714	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000429714	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000466714	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000466714	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000383655	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000383655	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000474196	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000474196	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000436574	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000436574	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000490260	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000490260	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000458265	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000458265	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000484052	ENST00000259750		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-intron	ENST00000484052	ENST00000304139		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	ZNF311	chr6	28966511	-	TTBK1	chr6	43237381	+
intron-5UTR	ENST00000409466	ENST00000520552		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409466	ENST00000335659		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409466	ENST00000519597		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409466	ENST00000520311		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409466	ENST00000519316		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-intron	ENST00000409466	ENST00000524319		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000334816	ENST00000520552		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000334816	ENST00000335659		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000334816	ENST00000519597		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000334816	ENST00000520311		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000334816	ENST00000519316		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-intron	ENST00000334816	ENST00000524319		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409877	ENST00000520552		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409877	ENST00000335659		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409877	ENST00000519597		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409877	ENST00000520311		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409877	ENST00000519316		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-intron	ENST00000409877	ENST00000524319		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409523	ENST00000520552		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409523	ENST00000335659		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409523	ENST00000519597		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409523	ENST00000520311		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-5UTR	ENST00000409523	ENST00000519316		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
intron-intron	ENST00000409523	ENST00000524319		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000498049	ENST00000520552		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000498049	ENST00000335659		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000498049	ENST00000519597		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000498049	ENST00000520311		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-5UTR	ENST00000498049	ENST00000519316		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
5UTR-intron	ENST00000498049	ENST00000524319		TCGA	RV	CHOL	TCGA-ZH-A8Y2-01A	C2orf76	chr2	120124366	-	ANKRD46	chr8	101542088	-
In-frame	ENST00000318789	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
In-frame	ENST00000318789	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000318789	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000475937	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000475937	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000475937	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
In-frame	ENST00000493089	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
In-frame	ENST00000493089	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000493089	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000484350	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000484350	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000484350	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
intron-3CDS	ENST00000318779	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
intron-3CDS	ENST00000318779	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
intron-intron	ENST00000318779	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000491238	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000491238	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000491238	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000498215	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000498215	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000498215	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000468577	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000468577	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5CDS-intron	ENST00000468577	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5UTR-3CDS	ENST00000472382	ENST00000359120		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5UTR-3CDS	ENST00000472382	ENST00000511217		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
5UTR-intron	ENST00000472382	ENST00000511705		TCGA	RV	CHOL	TCGA-WD-A7RX-01A	FOXP1	chr3	71090479	-	SH3RF2	chr5	145379621	+
Frame-shit	ENST00000421306	ENST00000552276		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000421306	ENST00000435558		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000421306	ENST00000551178		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000421306	ENST00000547178		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000421306	ENST00000225328		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000421306	ENST00000345901		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
In-frame	ENST00000421306	ENST00000552050		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5CDS-intron	ENST00000421306	ENST00000550772		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000262483	ENST00000552276		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000262483	ENST00000435558		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000262483	ENST00000551178		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000262483	ENST00000547178		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000262483	ENST00000225328		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
Frame-shit	ENST00000262483	ENST00000345901		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
In-frame	ENST00000262483	ENST00000552050		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5CDS-intron	ENST00000262483	ENST00000550772		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000552276		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000435558		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000551178		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000547178		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000225328		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000345901		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-3CDS	ENST00000576664	ENST00000552050		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5UTR-intron	ENST00000576664	ENST00000550772		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PITPNM3	chr17	6371545	-	P2RX5	chr17	3595088	-
5CDS-intron	ENST00000412504	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000412504	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000412504	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000412504	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000412504	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000412504	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000072516	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000072516	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000072516	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000072516	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000072516	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000072516	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000443369	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000443369	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000443369	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000443369	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000443369	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000443369	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000439062	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000439062	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000439062	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000439062	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000439062	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000439062	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000447382	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000447382	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000447382	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000447382	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000447382	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000447382	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000422485	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422485	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422485	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422485	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422485	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422485	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000434491	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000434491	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000434491	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000434491	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000434491	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000434491	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000422940	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422940	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422940	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422940	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422940	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000422940	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-intron	ENST00000317757	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000317757	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000317757	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000317757	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000317757	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000317757	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
intron-intron	ENST00000465496	ENST00000478145		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
intron-5UTR	ENST00000465496	ENST00000381580		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
intron-5UTR	ENST00000465496	ENST00000344103		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
intron-5UTR	ENST00000465496	ENST00000303415		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
intron-5UTR	ENST00000465496	ENST00000381583		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
intron-5UTR	ENST00000465496	ENST00000216927		TCGA	RV	CHOL	TCGA-W5-AA39-01A	IL1RAP	chr3	190347287	+	SIRPG	chr20	1630054	-
5CDS-5UTR	ENST00000268712	ENST00000399849		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
5CDS-5UTR	ENST00000268712	ENST00000322941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
5CDS-5UTR	ENST00000395851	ENST00000399849		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
5CDS-5UTR	ENST00000395851	ENST00000322941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
5CDS-5UTR	ENST00000395857	ENST00000399849		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
5CDS-5UTR	ENST00000395857	ENST00000322941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
intron-5UTR	ENST00000395848	ENST00000399849		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
intron-5UTR	ENST00000395848	ENST00000322941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
intron-5UTR	ENST00000583226	ENST00000399849		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
intron-5UTR	ENST00000583226	ENST00000322941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NCOR1	chr17	15973479	-	HIC1	chr17	1959965	+
intron-intron	ENST00000480944	ENST00000360416		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
intron-intron	ENST00000480944	ENST00000379980		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
intron-intron	ENST00000480944	ENST00000396239		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
intron-intron	ENST00000480944	ENST00000269243		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000394509	ENST00000360416		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000394509	ENST00000379980		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000394509	ENST00000396239		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000394509	ENST00000269243		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000536149	ENST00000360416		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000536149	ENST00000379980		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000536149	ENST00000396239		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000536149	ENST00000269243		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000435911	ENST00000360416		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000435911	ENST00000379980		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000435911	ENST00000396239		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000435911	ENST00000269243		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000586216	ENST00000360416		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000586216	ENST00000379980		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000586216	ENST00000396239		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
5CDS-intron	ENST00000586216	ENST00000269243		TCGA	RV	CHOL	TCGA-W5-AA31-01A	CCL14	chr17	34313607	-	MYH10	chr17	8526815	-
Frame-shit	ENST00000449833	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000449833	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000449833	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449833	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449833	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449833	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449833	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449833	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449833	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000409161	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000409161	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000409161	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409161	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409161	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409161	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409161	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409161	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409161	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000423696	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000423696	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000423696	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000423696	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000423696	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000423696	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000423696	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000423696	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000423696	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000338508	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000338508	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000338508	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000338508	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000338508	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000338508	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000338508	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000338508	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000338508	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000409530	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000409530	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000409530	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409530	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409530	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409530	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409530	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409530	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000409530	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000449116	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000449116	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000449116	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449116	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449116	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449116	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449116	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449116	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000449116	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000357171	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000357171	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000357171	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000357171	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000357171	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000357171	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000357171	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000357171	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000357171	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000468619	ENST00000294064		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000468619	ENST00000531509		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000468619	ENST00000544263		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-intron	ENST00000468619	ENST00000529024		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-intron	ENST00000468619	ENST00000532963		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-intron	ENST00000468619	ENST00000531619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-intron	ENST00000468619	ENST00000545272		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-intron	ENST00000468619	ENST00000526068		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-intron	ENST00000468619	ENST00000534628		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000339208	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000339208	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000339208	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000339208	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000346661	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000346661	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000346661	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000346661	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000345615	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000345615	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000345615	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000345615	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000502449	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000502449	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000502449	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000502449	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000591288	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000591288	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000591288	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000591288	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000394378	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000394378	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000394378	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000394378	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000585472	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000585472	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-3CDS	ENST00000585472	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
intron-intron	ENST00000585472	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
5UTR-3CDS	ENST00000588194	ENST00000447110		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
5UTR-3CDS	ENST00000588194	ENST00000581552		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
5UTR-3CDS	ENST00000588194	ENST00000584803		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
5UTR-intron	ENST00000588194	ENST00000583222		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SYNRG	chr17	35939228	-	PIK3R5	chr17	8809054	-
5CDS-intron	ENST00000356136	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356136	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356136	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356136	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356136	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356136	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356136	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-5UTR	ENST00000356136	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000528420	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
5CDS-5UTR	ENST00000528420	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000533454	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000533454	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000531818	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000531818	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000532130	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000532130	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000539288	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000539288	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-intron	ENST00000525872	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
3UTR-5UTR	ENST00000525872	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000449833		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000409161		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000423696		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000338508		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000409530		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000449116		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-intron	ENST00000538870	ENST00000357171		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000538870	ENST00000468619		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70666787	-
Frame-shit	ENST00000398645	ENST00000310137		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000398645	ENST00000393979		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000398645	ENST00000409372		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000398645	ENST00000443702		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000398645	ENST00000409738		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000398645	ENST00000461478		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000529006	ENST00000310137		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000529006	ENST00000393979		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000529006	ENST00000409372		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000529006	ENST00000443702		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000529006	ENST00000409738		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000529006	ENST00000461478		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000526258	ENST00000310137		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000526258	ENST00000393979		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000526258	ENST00000409372		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000526258	ENST00000443702		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-intron	ENST00000526258	ENST00000409738		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000526258	ENST00000461478		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000308783	ENST00000310137		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000308783	ENST00000393979		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000308783	ENST00000409372		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000308783	ENST00000443702		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-intron	ENST00000308783	ENST00000409738		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000308783	ENST00000461478		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000530342	ENST00000310137		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000530342	ENST00000393979		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000530342	ENST00000409372		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000530342	ENST00000443702		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-intron	ENST00000530342	ENST00000409738		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000530342	ENST00000461478		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	KDM2A	chr11	66888829	+	RBM14	chr11	66391685	+
5UTR-3CDS	ENST00000419197	ENST00000388752		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000419197	ENST00000230413		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000419197	ENST00000489623		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000419197	ENST00000487429		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000419197	ENST00000468957		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
3UTR-3CDS	ENST00000526888	ENST00000388752		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
3UTR-3CDS	ENST00000526888	ENST00000230413		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
3UTR-3CDS	ENST00000526888	ENST00000489623		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
3UTR-3CDS	ENST00000526888	ENST00000487429		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
3UTR-3CDS	ENST00000526888	ENST00000468957		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000527958	ENST00000388752		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000527958	ENST00000230413		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000527958	ENST00000489623		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000527958	ENST00000487429		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000527958	ENST00000468957		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000529887	ENST00000388752		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000529887	ENST00000230413		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000529887	ENST00000489623		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000529887	ENST00000487429		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000529887	ENST00000468957		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000530272	ENST00000388752		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000530272	ENST00000230413		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000530272	ENST00000489623		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000530272	ENST00000487429		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
5UTR-3CDS	ENST00000530272	ENST00000468957		TCGA	RV	CHOL	TCGA-3X-AAVC-01A	PAFAH1B2	chr11	117015134	+	MRPL2	chr6	43025971	-
In-frame	ENST00000377921	ENST00000316157		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
5CDS-intron	ENST00000377921	ENST00000469487		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
Frame-shit	ENST00000345264	ENST00000316157		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
5CDS-intron	ENST00000345264	ENST00000469487		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
intron-3CDS	ENST00000602389	ENST00000316157		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
intron-intron	ENST00000602389	ENST00000469487		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
intron-3CDS	ENST00000464074	ENST00000316157		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
intron-intron	ENST00000464074	ENST00000469487		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	RSU1	chr10	16858972	-	LARP4B	chr10	863829	-
Frame-shit	ENST00000261712	ENST00000354059		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PSMD11	chr17	30781637	+	CCL15	chr17	34325427	-
Frame-shit	ENST00000457654	ENST00000354059		TCGA	RV	CHOL	TCGA-W5-AA31-01A	PSMD11	chr17	30781637	+	CCL15	chr17	34325427	-
Frame-shit	ENST00000338034	ENST00000408982		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000338034	ENST00000262477		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000537505		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000546142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000341923		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000570487		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000395962	ENST00000408982		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000395962	ENST00000262477		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000537505		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000546142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000341923		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000570487		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000426905	ENST00000408982		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000426905	ENST00000262477		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000537505		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000546142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000341923		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000570487		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5UTR-3CDS	ENST00000609345	ENST00000408982		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5UTR-3CDS	ENST00000609345	ENST00000262477		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000537505		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000546142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000341923		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000570487		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
intron-3CDS	ENST00000578071	ENST00000408982		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
intron-3CDS	ENST00000578071	ENST00000262477		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000537505		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000546142		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000341923		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000570487		TCGA	RV	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12909238	-	RABEP1	chr17	5211989	+
5CDS-5UTR	ENST00000369535	ENST00000399136		TCGA	RV	CHOL	TCGA-W6-AA0S-01A	NRAS	chr1	115258671	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000369535	ENST00000342108		TCGA	RV	CHOL	TCGA-W6-AA0S-01A	NRAS	chr1	115258671	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000369535	ENST00000399139		TCGA	RV	CHOL	TCGA-W6-AA0S-01A	NRAS	chr1	115258671	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000369535	ENST00000399137		TCGA	RV	CHOL	TCGA-W6-AA0S-01A	NRAS	chr1	115258671	-	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000369535	ENST00000399135		TCGA	RV	CHOL	TCGA-W6-AA0S-01A	NRAS	chr1	115258671	-	CLDN14	chr21	37834074	-
5CDS-intron	ENST00000369535	ENST00000478313		TCGA	RV	CHOL	TCGA-W6-AA0S-01A	NRAS	chr1	115258671	-	CLDN14	chr21	37834074	-
Frame-shit	ENST00000247833	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000247833	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000247833	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000247833	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000247833	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000247833	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000247833	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000247833	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000247833	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
Frame-shit	ENST00000378815	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000378815	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000378815	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000378815	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000378815	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000378815	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000378815	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000378815	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000378815	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-3CDS	ENST00000325555	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000325555	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000325555	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000325555	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000325555	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000325555	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000325555	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000325555	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000325555	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
Frame-shit	ENST00000483530	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000483530	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000483530	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000483530	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000483530	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000483530	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000483530	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000483530	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000483530	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
Frame-shit	ENST00000550536	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000550536	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000550536	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000550536	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000550536	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000550536	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000550536	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000550536	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000550536	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
Frame-shit	ENST00000362025	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000362025	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000362025	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000362025	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000362025	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000362025	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000362025	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000362025	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000362025	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-3CDS	ENST00000551641	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000551641	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000551641	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000551641	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000551641	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000551641	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000551641	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000551641	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000551641	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-3CDS	ENST00000553099	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000553099	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000553099	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000553099	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-5UTR	ENST00000553099	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000553099	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000553099	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000553099	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
5UTR-intron	ENST00000553099	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-3CDS	ENST00000550847	ENST00000331471		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000550847	ENST00000488961		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000550847	ENST00000330891		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000550847	ENST00000553096		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000550847	ENST00000476098		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-intron	ENST00000550847	ENST00000266661		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-intron	ENST00000550847	ENST00000551160		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-intron	ENST00000550847	ENST00000393365		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
intron-intron	ENST00000550847	ENST00000533674		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	RAB3IP	chr12	70178595	+	BEST3	chr12	70072673	-
Frame-shit	ENST00000421807	ENST00000254719		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
5CDS-intron	ENST00000421807	ENST00000573924		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
5UTR-3CDS	ENST00000406424	ENST00000254719		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
5UTR-intron	ENST00000406424	ENST00000573924		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
5UTR-3CDS	ENST00000320345	ENST00000254719		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
5UTR-intron	ENST00000320345	ENST00000573924		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
intron-3CDS	ENST00000397335	ENST00000254719		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
intron-intron	ENST00000397335	ENST00000573924		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
Frame-shit	ENST00000542125	ENST00000254719		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
5CDS-intron	ENST00000542125	ENST00000573924		TCGA	RV	CHOL	TCGA-W5-AA31-01A	INPP5K	chr17	1417166	-	RPA1	chr17	1746097	+
Frame-shit	ENST00000354329	ENST00000356175		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000354329	ENST00000358273		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000354329	ENST00000431387		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000354329	ENST00000581113		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000354329	ENST00000417592		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000354329	ENST00000444181		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
intron-3CDS	ENST00000529578	ENST00000356175		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
intron-3CDS	ENST00000529578	ENST00000358273		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
intron-3CDS	ENST00000529578	ENST00000431387		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
intron-intron	ENST00000529578	ENST00000581113		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
intron-intron	ENST00000529578	ENST00000417592		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
intron-intron	ENST00000529578	ENST00000444181		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000533112	ENST00000356175		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000533112	ENST00000358273		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000533112	ENST00000431387		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000533112	ENST00000581113		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000533112	ENST00000417592		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000533112	ENST00000444181		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000531253	ENST00000356175		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000531253	ENST00000358273		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000531253	ENST00000431387		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000531253	ENST00000581113		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000531253	ENST00000417592		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000531253	ENST00000444181		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000527372	ENST00000356175		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000527372	ENST00000358273		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
Frame-shit	ENST00000527372	ENST00000431387		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000527372	ENST00000581113		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000527372	ENST00000417592		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
5CDS-intron	ENST00000527372	ENST00000444181		TCGA	RV	CHOL	TCGA-W5-AA31-01A	MYO18A	chr17	27492960	-	NF1	chr17	29483001	+
In-frame	ENST00000264645	ENST00000394121		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	CASC3	chr17	38324670	+	THRA	chr17	38249273	+
Frame-shit	ENST00000264645	ENST00000264637		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	CASC3	chr17	38324670	+	THRA	chr17	38249273	+
5CDS-intron	ENST00000264645	ENST00000584985		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	CASC3	chr17	38324670	+	THRA	chr17	38249273	+
5CDS-intron	ENST00000264645	ENST00000450525		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	CASC3	chr17	38324670	+	THRA	chr17	38249273	+
5CDS-intron	ENST00000264645	ENST00000546243		TCGA	RV	CHOL	TCGA-ZH-A8Y4-01A	CASC3	chr17	38324670	+	THRA	chr17	38249273	+
Frame-shit	ENST00000263846	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000263846	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000263846	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000263846	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
5CDS-intron	ENST00000263846	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000540677	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000540677	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000540677	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000540677	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
5CDS-intron	ENST00000540677	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000539008	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000539008	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000539008	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000539008	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
5CDS-intron	ENST00000539008	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542836	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542836	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542836	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542836	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
5CDS-intron	ENST00000542836	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542670	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542670	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542670	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000542670	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
5CDS-intron	ENST00000542670	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000535826	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000535826	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000535826	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
Frame-shit	ENST00000535826	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
5CDS-intron	ENST00000535826	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
intron-3CDS	ENST00000540831	ENST00000527697		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
intron-3CDS	ENST00000540831	ENST00000278829		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
intron-3CDS	ENST00000540831	ENST00000540820		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
intron-3CDS	ENST00000540831	ENST00000525588		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
intron-intron	ENST00000540831	ENST00000529525		TCGA	RV	CHOL	TCGA-YR-A95A-01A	SYT7	chr11	61318856	-	FADS3	chr11	61646319	-
In-frame	ENST00000358136	ENST00000280193		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
5CDS-intron	ENST00000358136	ENST00000507638		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
In-frame	ENST00000356315	ENST00000280193		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
5CDS-intron	ENST00000356315	ENST00000507638		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-3CDS	ENST00000496628	ENST00000280193		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-intron	ENST00000496628	ENST00000507638		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-3CDS	ENST00000543766	ENST00000280193		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-intron	ENST00000543766	ENST00000507638		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-3CDS	ENST00000471923	ENST00000280193		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-intron	ENST00000471923	ENST00000507638		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-3CDS	ENST00000543710	ENST00000280193		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
intron-intron	ENST00000543710	ENST00000507638		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	VPS13D	chr1	12353761	+	VEGFC	chr4	177650900	-
In-frame	ENST00000448150	ENST00000368069		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
In-frame	ENST00000448150	ENST00000241704		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
In-frame	ENST00000367649	ENST00000368069		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
In-frame	ENST00000367649	ENST00000241704		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
intron-3CDS	ENST00000465723	ENST00000368069		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
intron-3CDS	ENST00000465723	ENST00000241704		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
intron-3CDS	ENST00000462775	ENST00000368069		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
intron-3CDS	ENST00000462775	ENST00000241704		TCGA	RV	CHOL	TCGA-4G-AAZO-01A	RASAL2	chr1	178269253	+	COPA	chr1	160310084	-
In-frame	ENST00000254719	ENST00000437219		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
In-frame	ENST00000254719	ENST00000309182		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
5CDS-intron	ENST00000254719	ENST00000446363		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
5CDS-5UTR	ENST00000254719	ENST00000419248		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
5CDS-5UTR	ENST00000254719	ENST00000409644		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
5CDS-intron	ENST00000254719	ENST00000545662		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
intron-3CDS	ENST00000573924	ENST00000437219		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
intron-3CDS	ENST00000573924	ENST00000309182		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
intron-intron	ENST00000573924	ENST00000446363		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
intron-5UTR	ENST00000573924	ENST00000419248		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
intron-5UTR	ENST00000573924	ENST00000409644		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
intron-intron	ENST00000573924	ENST00000545662		TCGA	RV	CHOL	TCGA-W5-AA31-01A	RPA1	chr17	1756483	+	WDR81	chr17	1633674	+
In-frame	ENST00000261716	ENST00000268712		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
In-frame	ENST00000261716	ENST00000395851		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5CDS-intron	ENST00000261716	ENST00000395857		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5CDS-intron	ENST00000261716	ENST00000395848		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5CDS-intron	ENST00000261716	ENST00000583226		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
In-frame	ENST00000536202	ENST00000268712		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
In-frame	ENST00000536202	ENST00000395851		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5CDS-intron	ENST00000536202	ENST00000395857		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5CDS-intron	ENST00000536202	ENST00000395848		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5CDS-intron	ENST00000536202	ENST00000583226		TCGA	RV	CHOL	TCGA-W5-AA31-01A	TAOK1	chr17	27838010	+	NCOR1	chr17	15984041	-
5UTR-3CDS	ENST00000450241	ENST00000319023		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000450241	ENST00000539574		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000450241	ENST00000530055		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000450241	ENST00000526039		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000414720	ENST00000319023		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000414720	ENST00000539574		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000414720	ENST00000530055		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000414720	ENST00000526039		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000455521	ENST00000319023		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000455521	ENST00000539574		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000455521	ENST00000530055		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000455521	ENST00000526039		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000595687	ENST00000319023		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000595687	ENST00000539574		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000595687	ENST00000530055		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000595687	ENST00000526039		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000594395	ENST00000319023		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000594395	ENST00000539574		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000594395	ENST00000530055		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000594395	ENST00000526039		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000340963	ENST00000319023		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000340963	ENST00000539574		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000340963	ENST00000530055		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000340963	ENST00000526039		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596073	-	NADSYN1	chr11	71201891	+
In-frame	ENST00000373886	ENST00000369061		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000357555		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000358487		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000356226		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000369060		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000369059		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000346997		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000457416		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000351936		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000360144		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000369056		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000490349		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000359354		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000373886	ENST00000478859		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
In-frame	ENST00000263103	ENST00000369061		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000357555		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000358487		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000356226		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000369060		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000369059		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000346997		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000457416		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000351936		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000360144		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000369056		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000490349		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000359354		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000263103	ENST00000478859		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000476684	ENST00000369061		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000357555		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000358487		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000356226		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000369060		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000369059		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000346997		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000457416		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000351936		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000360144		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000369056		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000490349		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000359354		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000476684	ENST00000478859		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	BICC1	chr10	60563002	+	FGFR2	chr10	123239535	-
Frame-shit	ENST00000284719	ENST00000258418		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
Frame-shit	ENST00000284719	ENST00000410084		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
Frame-shit	ENST00000284719	ENST00000409788		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5CDS-intron	ENST00000284719	ENST00000484398		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
In-frame	ENST00000344357	ENST00000258418		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
In-frame	ENST00000344357	ENST00000410084		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
In-frame	ENST00000344357	ENST00000409788		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5CDS-intron	ENST00000344357	ENST00000484398		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
Frame-shit	ENST00000428402	ENST00000258418		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
Frame-shit	ENST00000428402	ENST00000410084		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
Frame-shit	ENST00000428402	ENST00000409788		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5CDS-intron	ENST00000428402	ENST00000484398		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
In-frame	ENST00000409546	ENST00000258418		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
In-frame	ENST00000409546	ENST00000410084		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
In-frame	ENST00000409546	ENST00000409788		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5CDS-intron	ENST00000409546	ENST00000484398		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5UTR-3CDS	ENST00000392560	ENST00000258418		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5UTR-3CDS	ENST00000392560	ENST00000410084		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5UTR-3CDS	ENST00000392560	ENST00000409788		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
5UTR-intron	ENST00000392560	ENST00000484398		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	OLA1	chr2	174987908	-	CAB39	chr2	231663444	+
intron-intron	ENST00000556679	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000556679	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000556679	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000556679	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000556679	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000456570	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000456570	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000456570	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000456570	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000456570	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000477310	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000477310	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000477310	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000477310	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000477310	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000425368	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000425368	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000425368	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000425368	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000425368	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497841	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497841	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497841	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497841	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000497841	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417261	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417261	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417261	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417261	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000417261	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427888	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427888	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427888	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427888	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427888	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000459734	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000459734	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000459734	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000459734	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000459734	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000455591	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000455591	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000455591	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000455591	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000455591	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000433503	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000433503	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000433503	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000433503	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000433503	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000474621	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000474621	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000474621	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000474621	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000474621	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000424727	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000424727	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000424727	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000424727	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000424727	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000436692	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000436692	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000436692	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000436692	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000436692	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000473139	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000473139	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000473139	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000473139	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000473139	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000399981	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000399981	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000399981	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000399981	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000399981	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419920	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419920	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419920	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419920	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419920	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000465211	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000465211	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000465211	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000465211	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000465211	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375455	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375455	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375455	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375455	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000375455	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000489605	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000489605	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000489605	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000489605	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000489605	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000426239	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000426239	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000426239	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000426239	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000426239	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419411	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419411	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419411	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419411	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000419411	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000460958	ENST00000322776		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000460958	ENST00000532303		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000460958	ENST00000529927		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000460958	ENST00000415352		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000460958	ENST00000526169		TCGA	RV	CHOL	TCGA-W5-AA36-01A	CFB	chr6	31919861	+	NDUFV1	chr11	67375697	+
5UTR-3CDS	ENST00000438493	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000438493	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000438493	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-5UTR	ENST00000438493	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000452682	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000452682	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000452682	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-5UTR	ENST00000452682	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
3UTR-3CDS	ENST00000498586	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
3UTR-3CDS	ENST00000498586	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
3UTR-3CDS	ENST00000498586	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
3UTR-5UTR	ENST00000498586	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000430396	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000430396	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000430396	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-5UTR	ENST00000430396	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000374087	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000374087	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000374087	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-5UTR	ENST00000374087	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000414907	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000414907	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-3CDS	ENST00000414907	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
5UTR-5UTR	ENST00000414907	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000344348	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000344348	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000344348	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-5UTR	ENST00000344348	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000374082	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000374082	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000374082	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-5UTR	ENST00000374082	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000443446	ENST00000377921		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000443446	ENST00000345264		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-3CDS	ENST00000443446	ENST00000602389		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
intron-5UTR	ENST00000443446	ENST00000464074		TCGA	RV	CHOL	TCGA-W5-AA2U-01A	NCOA4	chr10	51565296	+	RSU1	chr10	16635495	-
In-frame	ENST00000356175	ENST00000353533		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
In-frame	ENST00000356175	ENST00000415385		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
5CDS-3UTR	ENST00000356175	ENST00000581941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
In-frame	ENST00000358273	ENST00000353533		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
In-frame	ENST00000358273	ENST00000415385		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
5CDS-3UTR	ENST00000358273	ENST00000581941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
In-frame	ENST00000431387	ENST00000353533		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
In-frame	ENST00000431387	ENST00000415385		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
5CDS-3UTR	ENST00000431387	ENST00000581941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3CDS	ENST00000581113	ENST00000353533		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3CDS	ENST00000581113	ENST00000415385		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3UTR	ENST00000581113	ENST00000581941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3CDS	ENST00000417592	ENST00000353533		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3CDS	ENST00000417592	ENST00000415385		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3UTR	ENST00000417592	ENST00000581941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3CDS	ENST00000444181	ENST00000353533		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3CDS	ENST00000444181	ENST00000415385		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
intron-3UTR	ENST00000444181	ENST00000581941		TCGA	RV	CHOL	TCGA-W5-AA31-01A	NF1	chr17	29509683	+	MAP2K4	chr17	12028611	+
5CDS-intron	ENST00000377795	ENST00000484427		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000377795	ENST00000371764		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
intron-intron	ENST00000353334	ENST00000484427		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
intron-intron	ENST00000353334	ENST00000371764		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
intron-intron	ENST00000524315	ENST00000484427		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
intron-intron	ENST00000524315	ENST00000371764		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
intron-intron	ENST00000009530	ENST00000484427		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
intron-intron	ENST00000009530	ENST00000371764		TCGA	RV	CHOL	TCGA-W5-AA2H-01A	CD74	chr5	149781200	-	DDX27	chr20	47849303	+
In-frame	ENST00000329078	ENST00000261712		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SPNS2	chr17	4428488	+	PSMD11	chr17	30804539	+
In-frame	ENST00000329078	ENST00000457654		TCGA	RV	CHOL	TCGA-W5-AA31-01A	SPNS2	chr17	4428488	+	PSMD11	chr17	30804539	+
5CDS-5UTR	ENST00000282516	ENST00000292431		TCGA	RV	CHOL	TCGA-ZH-A8Y6-01A	NIPBL	chr5	36972143	+	NACC1	chr19	13246014	+
5CDS-5UTR	ENST00000448238	ENST00000292431		TCGA	RV	CHOL	TCGA-ZH-A8Y6-01A	NIPBL	chr5	36972143	+	NACC1	chr19	13246014	+
3UTR-5UTR	ENST00000504430	ENST00000292431		TCGA	RV	CHOL	TCGA-ZH-A8Y6-01A	NIPBL	chr5	36972143	+	NACC1	chr19	13246014	+
In-frame	ENST00000311161	ENST00000310653		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000311161	ENST00000336083		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000311161	ENST00000536566		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000311161	ENST00000541588		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000357440	ENST00000310653		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000357440	ENST00000336083		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000357440	ENST00000536566		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000357440	ENST00000541588		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000544554	ENST00000310653		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000544554	ENST00000336083		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000544554	ENST00000536566		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000544554	ENST00000541588		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000546034	ENST00000310653		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000546034	ENST00000336083		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000546034	ENST00000536566		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000546034	ENST00000541588		TCGA	RV	CHOL	TCGA-W5-AA2X-01A	SLC29A2	chr11	66133407	-	RAB6A	chr11	73390765	-
In-frame	ENST00000369061	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369061	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369061	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369061	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369061	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000357555	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000357555	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000357555	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000357555	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000357555	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000358487	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000358487	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000358487	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000358487	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000358487	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000356226	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000356226	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000356226	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000356226	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000356226	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000369060	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369060	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369060	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369060	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369060	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000369059	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369059	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369059	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369059	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369059	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
In-frame	ENST00000346997	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000346997	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000346997	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000346997	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000346997	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000457416	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000457416	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000457416	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000457416	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000457416	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000351936	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000351936	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000351936	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000351936	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000351936	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000360144	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000360144	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000360144	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000360144	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000360144	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
In-frame	ENST00000369056	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369056	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369056	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369056	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000369056	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-3CDS	ENST00000490349	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000490349	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000490349	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000490349	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000490349	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-3CDS	ENST00000359354	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000359354	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000359354	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000359354	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
intron-intron	ENST00000359354	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
Frame-shit	ENST00000478859	ENST00000369287		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000478859	ENST00000543782		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000478859	ENST00000497592		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000478859	ENST00000369285		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
5CDS-intron	ENST00000478859	ENST00000369286		TCGA	RV	CHOL	TCGA-W5-AA2Z-01A	FGFR2	chr10	123243212	-	C10orf118	chr10	115910979	-
In-frame	ENST00000368226	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368226	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000368226	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368227	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368227	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000368227	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000532331	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000532331	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000532331	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368213	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368213	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000368213	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368210	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368210	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000368210	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368215	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368215	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000368215	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368207	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000368207	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5CDS-5UTR	ENST00000368207	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5UTR-3CDS	ENST00000524481	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5UTR-3CDS	ENST00000524481	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
5UTR-5UTR	ENST00000524481	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
intron-3CDS	ENST00000525459	ENST00000369603		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
intron-3CDS	ENST00000525459	ENST00000369592		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
intron-5UTR	ENST00000525459	ENST00000471297		TCGA	RV	CHOL	TCGA-ZH-A8Y1-01A	PTPRK	chr6	128561180	-	SMNDC1	chr10	112058548	-
In-frame	ENST00000369061	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369061	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369061	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000357555	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000357555	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000357555	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000358487	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000358487	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000358487	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000356226	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000356226	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000356226	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000369060	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369060	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369060	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000369059	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369059	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369059	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
In-frame	ENST00000346997	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000346997	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000346997	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000457416	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000457416	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000457416	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000351936	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000351936	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000351936	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000360144	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000360144	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000360144	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
In-frame	ENST00000369056	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369056	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369056	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-3CDS	ENST00000490349	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000490349	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000490349	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-3CDS	ENST00000359354	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000359354	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000359354	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000478859	ENST00000373886		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000478859	ENST00000263103		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000478859	ENST00000476684		TCGA	RV	CHOL	TCGA-ZH-A8Y5-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
In-frame	ENST00000369061	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
In-frame	ENST00000369061	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000369061	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000357555	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000357555	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000357555	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000358487	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000358487	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000358487	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000356226	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000356226	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000356226	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000369060	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000369060	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000369060	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000369059	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000369059	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000369059	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
In-frame	ENST00000346997	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
In-frame	ENST00000346997	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000346997	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000457416	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000457416	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000457416	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000351936	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000351936	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000351936	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000360144	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000360144	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000360144	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
In-frame	ENST00000369056	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
In-frame	ENST00000369056	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000369056	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
intron-3CDS	ENST00000490349	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
intron-3CDS	ENST00000490349	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
intron-intron	ENST00000490349	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
intron-3CDS	ENST00000359354	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
intron-3CDS	ENST00000359354	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
intron-intron	ENST00000359354	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000478859	ENST00000373886		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
Frame-shit	ENST00000478859	ENST00000263103		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
5CDS-intron	ENST00000478859	ENST00000476684		TCGA	RV	CHOL	TCGA-W5-AA2W-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60566344	+
In-frame	ENST00000369061	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369061	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369061	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369061	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369061	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000357555	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000358487	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000356226	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369060	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369059	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000346997	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000457416	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000351936	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000360144	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369056	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-5UTR	ENST00000490349	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-5UTR	ENST00000359354	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000392903		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000260777		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000355371		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000392901		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000478859	ENST00000497044		TCGA	RV	CHOL	TCGA-W5-AA2Q-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000344663	ENST00000215368		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	MUM1	chr19	1367219	+	EFNA2	chr19	1299823	+
Frame-shit	ENST00000591806	ENST00000215368		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	MUM1	chr19	1367219	+	EFNA2	chr19	1299823	+
Frame-shit	ENST00000311401	ENST00000215368		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	MUM1	chr19	1367219	+	EFNA2	chr19	1299823	+
Frame-shit	ENST00000415183	ENST00000215368		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	MUM1	chr19	1367219	+	EFNA2	chr19	1299823	+
intron-3CDS	ENST00000591453	ENST00000215368		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	MUM1	chr19	1367219	+	EFNA2	chr19	1299823	+
5CDS-intron	ENST00000359947	ENST00000405088		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000359947	ENST00000471899		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000359947	ENST00000297508		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000438120	ENST00000405088		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000438120	ENST00000471899		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000438120	ENST00000297508		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000372413	ENST00000405088		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000372413	ENST00000471899		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000372413	ENST00000297508		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000372414	ENST00000405088		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000372414	ENST00000471899		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
5CDS-intron	ENST00000372414	ENST00000297508		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
intron-intron	ENST00000422171	ENST00000405088		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
intron-intron	ENST00000422171	ENST00000471899		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
intron-intron	ENST00000422171	ENST00000297508		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
intron-intron	ENST00000496447	ENST00000405088		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
intron-intron	ENST00000496447	ENST00000471899		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
intron-intron	ENST00000496447	ENST00000297508		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	PTPRF	chr1	44044591	+	MICALL2	chr7	1468427	-
Frame-shit	ENST00000262435	ENST00000308736		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	SMURF2	chr17	62657947	-	DHX37	chr12	125444969	-
Frame-shit	ENST00000262435	ENST00000544745		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	SMURF2	chr17	62657947	-	DHX37	chr12	125444969	-
intron-3CDS	ENST00000578200	ENST00000308736		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	SMURF2	chr17	62657947	-	DHX37	chr12	125444969	-
intron-3CDS	ENST00000578200	ENST00000544745		TCGA	LD	CHOL	TCGA-3X-AAVA-01A	SMURF2	chr17	62657947	-	DHX37	chr12	125444969	-
intron-3CDS	ENST00000265350	ENST00000341865		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
intron-intron	ENST00000265350	ENST00000356542		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
intron-3CDS	ENST00000467535	ENST00000341865		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
intron-intron	ENST00000467535	ENST00000356542		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
Frame-shit	ENST00000409312	ENST00000341865		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
5CDS-intron	ENST00000409312	ENST00000356542		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
intron-3CDS	ENST00000409060	ENST00000341865		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
intron-intron	ENST00000409060	ENST00000356542		TCGA	LD	CHOL	TCGA-3X-AAVC-01A	MED20	chr6	41877083	-	C6orf132	chr6	42075321	-
5UTR-3CDS	ENST00000375441	ENST00000434316		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5UTR-intron	ENST00000375441	ENST00000375391		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5UTR-3UTR	ENST00000375441	ENST00000474393		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5UTR-3CDS	ENST00000451881	ENST00000434316		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5UTR-intron	ENST00000451881	ENST00000375391		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5UTR-3UTR	ENST00000451881	ENST00000474393		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
intron-3CDS	ENST00000326335	ENST00000434316		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
intron-intron	ENST00000326335	ENST00000375391		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
intron-3UTR	ENST00000326335	ENST00000474393		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
Frame-shit	ENST00000375440	ENST00000434316		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5CDS-intron	ENST00000375440	ENST00000375391		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5CDS-3UTR	ENST00000375440	ENST00000474393		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
3UTR-3CDS	ENST00000463426	ENST00000434316		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
3UTR-intron	ENST00000463426	ENST00000375391		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
3UTR-3UTR	ENST00000463426	ENST00000474393		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	CUL4A	chr13	113864402	+	TMCO3	chr13	114188360	+
5UTR-3CDS	ENST00000393923	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
5UTR-intron	ENST00000393923	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000412622	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000412622	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000431670	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000431670	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000393925	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000393925	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000481953	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000481953	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000495180	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000495180	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000478922	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000478922	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000477695	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000477695	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000470699	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000470699	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PHLDB2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000393934	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PLCXD2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000393934	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PLCXD2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
3UTR-3CDS	ENST00000477665	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PLCXD2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
3UTR-intron	ENST00000477665	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PLCXD2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-3CDS	ENST00000472215	ENST00000452346		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PLCXD2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
intron-intron	ENST00000472215	ENST00000419127		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	PLCXD2	chr3	111451550	+	TMPRSS7	chr3	111756919	+
Frame-shit	ENST00000327347	ENST00000535784		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000327347	ENST00000423462		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000327347	ENST00000378000		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000327347	ENST00000298942		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000327347	ENST00000485788		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
Frame-shit	ENST00000378614	ENST00000535784		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000378614	ENST00000423462		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000378614	ENST00000378000		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000378614	ENST00000298942		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000378614	ENST00000485788		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
Frame-shit	ENST00000545675	ENST00000535784		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000545675	ENST00000423462		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000545675	ENST00000378000		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000545675	ENST00000298942		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5CDS-intron	ENST00000545675	ENST00000485788		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
intron-3CDS	ENST00000537130	ENST00000535784		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
intron-intron	ENST00000537130	ENST00000423462		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
intron-intron	ENST00000537130	ENST00000378000		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
intron-intron	ENST00000537130	ENST00000298942		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
intron-intron	ENST00000537130	ENST00000485788		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5UTR-3CDS	ENST00000494329	ENST00000535784		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5UTR-intron	ENST00000494329	ENST00000423462		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5UTR-intron	ENST00000494329	ENST00000378000		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5UTR-intron	ENST00000494329	ENST00000298942		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5UTR-intron	ENST00000494329	ENST00000485788		TCGA	LD	CHOL	TCGA-3X-AAVE-01A	SEPHS1	chr10	13386758	-	PTER	chr10	16547019	+
5UTR-3CDS	ENST00000303406	ENST00000405109		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000303406	ENST00000407609		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000303406	ENST00000405256		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000303406	ENST00000343941		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3UTR	ENST00000303406	ENST00000492025		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000507650	ENST00000405109		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000507650	ENST00000407609		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000507650	ENST00000405256		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000507650	ENST00000343941		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3UTR	ENST00000507650	ENST00000492025		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000609810	ENST00000405109		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000609810	ENST00000407609		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000609810	ENST00000405256		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000609810	ENST00000343941		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3UTR	ENST00000609810	ENST00000492025		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000430889	ENST00000405109		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000430889	ENST00000407609		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000430889	ENST00000405256		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000430889	ENST00000343941		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3UTR	ENST00000430889	ENST00000492025		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC4	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000394331	ENST00000405109		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000394331	ENST00000407609		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000394331	ENST00000405256		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000394331	ENST00000343941		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3UTR	ENST00000394331	ENST00000492025		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000243108	ENST00000405109		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000243108	ENST00000407609		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000243108	ENST00000405256		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3CDS	ENST00000243108	ENST00000343941		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
intron-3UTR	ENST00000243108	ENST00000492025		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	HOXC6	chr12	54411198	+	KBTBD12	chr3	127682032	+
5UTR-3CDS	ENST00000374012	ENST00000397527		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-3CDS	ENST00000374012	ENST00000342580		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-intron	ENST00000374012	ENST00000476146		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-intron	ENST00000374012	ENST00000397524		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-3CDS	ENST00000439301	ENST00000397527		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-3CDS	ENST00000439301	ENST00000342580		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-intron	ENST00000439301	ENST00000476146		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
5UTR-intron	ENST00000439301	ENST00000397524		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
3UTR-3CDS	ENST00000481202	ENST00000397527		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
3UTR-3CDS	ENST00000481202	ENST00000342580		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
3UTR-intron	ENST00000481202	ENST00000476146		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
3UTR-intron	ENST00000481202	ENST00000397524		TCGA	LD	CHOL	TCGA-W5-AA2U-01A	PHF20	chr20	34360001	+	CEP250	chr20	34096772	+
Frame-shit	ENST00000310137	ENST00000398645		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
Frame-shit	ENST00000310137	ENST00000529006		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000310137	ENST00000526258		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000310137	ENST00000308783		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
5CDS-intron	ENST00000310137	ENST00000530342		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000393979	ENST00000398645		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000393979	ENST00000529006		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000393979	ENST00000526258		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000393979	ENST00000308783		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000393979	ENST00000530342		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000409372	ENST00000398645		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000409372	ENST00000529006		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000409372	ENST00000526258		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000409372	ENST00000308783		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000409372	ENST00000530342		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000443702	ENST00000398645		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000443702	ENST00000529006		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000443702	ENST00000526258		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000443702	ENST00000308783		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000443702	ENST00000530342		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000409738	ENST00000398645		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000409738	ENST00000529006		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000409738	ENST00000526258		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000409738	ENST00000308783		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000409738	ENST00000530342		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000461478	ENST00000398645		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000461478	ENST00000529006		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000461478	ENST00000526258		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000461478	ENST00000308783		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000461478	ENST00000530342		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	RBM14	chr11	66393149	+	KDM2A	chr11	66947550	+
Frame-shit	ENST00000449833	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000449833	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000449833	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000449833	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000409161	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000409161	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000409161	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000409161	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000423696	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000423696	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000423696	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000423696	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000338508	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000338508	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000338508	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000338508	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000409530	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000409530	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000409530	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000409530	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000449116	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000449116	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000449116	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000449116	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000357171	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000357171	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000357171	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000357171	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000468619	ENST00000263672		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000468619	ENST00000530257		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000468619	ENST00000526361		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
intron-intron	ENST00000468619	ENST00000528265		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SHANK2	chr11	70505933	-	SPCS2	chr11	74687902	+
Frame-shit	ENST00000355086	ENST00000552285		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000355086	ENST00000315970		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000355086	ENST00000439210		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000355086	ENST00000389146		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000355086	ENST00000413095		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000355086	ENST00000551035		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000355086	ENST00000435406		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000355086	ENST00000257966		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000355086	ENST00000389142		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000357825	ENST00000552285		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000357825	ENST00000315970		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000357825	ENST00000439210		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
Frame-shit	ENST00000357825	ENST00000389146		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000357825	ENST00000413095		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000357825	ENST00000551035		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000357825	ENST00000435406		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000357825	ENST00000257966		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000357825	ENST00000389142		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543397	ENST00000552285		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543397	ENST00000315970		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543397	ENST00000439210		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543397	ENST00000389146		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-intron	ENST00000543397	ENST00000413095		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-intron	ENST00000543397	ENST00000551035		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-intron	ENST00000543397	ENST00000435406		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-intron	ENST00000543397	ENST00000257966		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
intron-intron	ENST00000543397	ENST00000389142		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64238663	+	OS9	chr12	58109543	+
In-frame	ENST00000355086	ENST00000542120		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
In-frame	ENST00000355086	ENST00000229088		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000355086	ENST00000456757		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000355086	ENST00000539867		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
In-frame	ENST00000357825	ENST00000542120		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
In-frame	ENST00000357825	ENST00000229088		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000357825	ENST00000456757		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000357825	ENST00000539867		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
In-frame	ENST00000543397	ENST00000542120		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
In-frame	ENST00000543397	ENST00000229088		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000543397	ENST00000456757		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000543397	ENST00000539867		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	SRGAP1	chr12	64410792	+	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000356136	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000356136	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000356136	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000356136	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000356136	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000356136	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000356136	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-5UTR	ENST00000356136	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-intron	ENST00000528420	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
5CDS-5UTR	ENST00000528420	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000533454	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000533454	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000531818	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000531818	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000532130	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000532130	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000539288	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000539288	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-intron	ENST00000525872	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
3UTR-5UTR	ENST00000525872	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000449833		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000409161		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000423696		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000338508		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000409530		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000449116		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-intron	ENST00000538870	ENST00000357171		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000538870	ENST00000468619		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	UVRAG	chr11	75623083	+	SHANK2	chr11	70653276	-
intron-3CDS	ENST00000450241	ENST00000319023		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000450241	ENST00000539574		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000450241	ENST00000530055		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3UTR	ENST00000450241	ENST00000526039		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000414720	ENST00000319023		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000414720	ENST00000539574		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000414720	ENST00000530055		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000414720	ENST00000526039		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000455521	ENST00000319023		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000455521	ENST00000539574		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000455521	ENST00000530055		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000455521	ENST00000526039		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000595687	ENST00000319023		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000595687	ENST00000539574		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000595687	ENST00000530055		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3UTR	ENST00000595687	ENST00000526039		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000594395	ENST00000319023		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000594395	ENST00000539574		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000594395	ENST00000530055		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3UTR	ENST00000594395	ENST00000526039		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000340963	ENST00000319023		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000340963	ENST00000539574		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3CDS	ENST00000340963	ENST00000530055		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
5UTR-3UTR	ENST00000340963	ENST00000526039		TCGA	LD	CHOL	TCGA-W5-AA2X-01A	ZNF780A	chr19	40596813	-	NADSYN1	chr11	71201891	+
intron-3CDS	ENST00000475805	ENST00000369061		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000357555		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000358487		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000356226		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000369060		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000369059		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000346997		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000457416		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000351936		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000360144		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000369056		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000490349		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000359354		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000475805	ENST00000478859		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000341179	ENST00000369061		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000357555		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000358487		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000356226		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000369060		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000369059		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000346997		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000457416		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000351936		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000360144		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000369056		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000490349		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000359354		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000341179	ENST00000478859		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000372923	ENST00000369061		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000357555		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000358487		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000356226		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000369060		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000369059		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000346997		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000457416		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000351936		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000360144		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000369056		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000490349		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000359354		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000372923	ENST00000478859		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000393594	ENST00000369061		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000357555		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000358487		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000356226		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000369060		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000369059		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000346997		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000457416		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000351936		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000360144		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000369056		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000490349		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000359354		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000393594	ENST00000478859		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000486160	ENST00000369061		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000357555		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000358487		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000356226		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000369060		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000369059		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000346997		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000457416		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000351936		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000360144		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000369056		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000490349		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000359354		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000486160	ENST00000478859		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000493925	ENST00000369061		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000357555		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000358487		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000356226		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000369060		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000369059		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000346997		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000457416		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000351936		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000360144		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000369056		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000490349		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000359354		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000493925	ENST00000478859		TCGA	LD	CHOL	TCGA-W5-AA2Z-01A	DNM1	chr9	130954059	+	FGFR2	chr10	123239535	-
In-frame	ENST00000280571	ENST00000420886		TCGA	LD	CHOL	TCGA-W5-AA30-01A	RILPL2	chr12	123915055	-	SBNO1	chr12	123782718	-
In-frame	ENST00000280571	ENST00000267176		TCGA	LD	CHOL	TCGA-W5-AA30-01A	RILPL2	chr12	123915055	-	SBNO1	chr12	123782718	-
In-frame	ENST00000280571	ENST00000602750		TCGA	LD	CHOL	TCGA-W5-AA30-01A	RILPL2	chr12	123915055	-	SBNO1	chr12	123782718	-
In-frame	ENST00000280571	ENST00000602398		TCGA	LD	CHOL	TCGA-W5-AA30-01A	RILPL2	chr12	123915055	-	SBNO1	chr12	123782718	-
Frame-shit	ENST00000338034	ENST00000408982		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000338034	ENST00000262477		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000537505		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000546142		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000341923		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000338034	ENST00000570487		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000395962	ENST00000408982		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000395962	ENST00000262477		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000537505		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000546142		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000341923		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000395962	ENST00000570487		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000426905	ENST00000408982		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
Frame-shit	ENST00000426905	ENST00000262477		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000537505		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000546142		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000341923		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5CDS-intron	ENST00000426905	ENST00000570487		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5UTR-3CDS	ENST00000609345	ENST00000408982		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5UTR-3CDS	ENST00000609345	ENST00000262477		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000537505		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000546142		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000341923		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
5UTR-intron	ENST00000609345	ENST00000570487		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-3CDS	ENST00000578071	ENST00000408982		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-3CDS	ENST00000578071	ENST00000262477		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000537505		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000546142		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000341923		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-intron	ENST00000578071	ENST00000570487		TCGA	LD	CHOL	TCGA-W5-AA31-01A	ELAC2	chr17	12913930	-	RABEP1	chr17	5211989	+
intron-3CDS	ENST00000575800	ENST00000336452		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000336458		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000576930		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000572815		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000573542		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000419711		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000571955		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000575800	ENST00000416016		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
In-frame	ENST00000301329	ENST00000336452		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000336458		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000576930		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000572815		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000573542		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000419711		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000571955		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301329	ENST00000416016		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
In-frame	ENST00000301328	ENST00000336452		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000336458		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000576930		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000572815		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000573542		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000419711		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000571955		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000301328	ENST00000416016		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
In-frame	ENST00000536578	ENST00000336452		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000336458		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000576930		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000572815		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000573542		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000419711		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000571955		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000536578	ENST00000416016		TCGA	LD	CHOL	TCGA-W5-AA31-01A	GLOD4	chr17	673109	-	EIF5A	chr17	7212934	+
intron-3CDS	ENST00000360502	ENST00000379672		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000360502	ENST00000340825		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000360502	ENST00000262444		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-intron	ENST00000360502	ENST00000578087		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000285013	ENST00000379672		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000285013	ENST00000340825		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000285013	ENST00000262444		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-intron	ENST00000285013	ENST00000578087		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000526861	ENST00000379672		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000526861	ENST00000340825		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000526861	ENST00000262444		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-intron	ENST00000526861	ENST00000578087		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000542635	ENST00000379672		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000542635	ENST00000340825		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000542635	ENST00000262444		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-intron	ENST00000542635	ENST00000578087		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000534689	ENST00000379672		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000534689	ENST00000340825		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-3CDS	ENST00000534689	ENST00000262444		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
5UTR-intron	ENST00000534689	ENST00000578087		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000533791	ENST00000379672		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000533791	ENST00000340825		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-3CDS	ENST00000533791	ENST00000262444		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
intron-intron	ENST00000533791	ENST00000578087		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SLFN13	chr17	33775741	-	ARHGAP44	chr17	12855818	+
3UTR-3CDS	ENST00000579301	ENST00000395511		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SMURF2P1	chr17	28927934	+	DHRS7B	chr17	21081546	+
3UTR-3CDS	ENST00000579301	ENST00000579303		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SMURF2P1	chr17	28927934	+	DHRS7B	chr17	21081546	+
3UTR-intron	ENST00000579301	ENST00000581463		TCGA	LD	CHOL	TCGA-W5-AA31-01A	SMURF2P1	chr17	28927934	+	DHRS7B	chr17	21081546	+
5CDS-intron	ENST00000261647	ENST00000250144		TCGA	LD	CHOL	TCGA-W5-AA31-01A	TTC19	chr17	15903559	+	MMP28	chr17	34083438	-
5CDS-intron	ENST00000486880	ENST00000250144		TCGA	LD	CHOL	TCGA-W5-AA31-01A	TTC19	chr17	15903559	+	MMP28	chr17	34083438	-
3UTR-intron	ENST00000497842	ENST00000250144		TCGA	LD	CHOL	TCGA-W5-AA31-01A	TTC19	chr17	15903559	+	MMP28	chr17	34083438	-
5CDS-intron	ENST00000374431	ENST00000324350		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374431	ENST00000373191		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374431	ENST00000397828		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374431	ENST00000246314		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374431	ENST00000471099		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000541779	ENST00000324350		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000541779	ENST00000373191		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000541779	ENST00000397828		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000541779	ENST00000246314		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000541779	ENST00000471099		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374430	ENST00000324350		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374430	ENST00000373191		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374430	ENST00000397828		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374430	ENST00000246314		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000374430	ENST00000471099		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000358883	ENST00000324350		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000358883	ENST00000373191		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000358883	ENST00000397828		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000358883	ENST00000246314		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000358883	ENST00000471099		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000538760	ENST00000324350		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000538760	ENST00000373191		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000538760	ENST00000397828		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000538760	ENST00000246314		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
5CDS-intron	ENST00000538760	ENST00000471099		TCGA	LD	CHOL	TCGA-W5-AA34-01A	LPAR1	chr9	113703701	-	AGO3	chr1	36499775	+
In-frame	ENST00000372396	ENST00000234961		TCGA	LD	CHOL	TCGA-W5-AA36-01A	KDM4A	chr1	44121437	+	OPRD1	chr1	29185466	+
3UTR-3CDS	ENST00000463151	ENST00000234961		TCGA	LD	CHOL	TCGA-W5-AA36-01A	KDM4A	chr1	44121437	+	OPRD1	chr1	29185466	+
intron-intron	ENST00000406486	ENST00000347330		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000413209		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000338641		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000403435		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000361452		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000403999		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000334961		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000353887		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000361166		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000397789		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000406486	ENST00000361676		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000347330		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000413209		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000338641		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000403435		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000361452		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000403999		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000334961		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000353887		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000361166		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000397789		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000358431	ENST00000361676		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000347330		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000413209		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000338641		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000403435		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000361452		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000403999		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000334961		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000353887		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000361166		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000397789		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
intron-intron	ENST00000401395	ENST00000361676		TCGA	LD	CHOL	TCGA-W5-AA39-01A	KIAA1671	chr22	25508429	+	NF2	chr22	30032740	+
In-frame	ENST00000262713	ENST00000506447		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
In-frame	ENST00000262713	ENST00000325971		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
In-frame	ENST00000262713	ENST00000430049		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5CDS-3UTR	ENST00000262713	ENST00000540847		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5UTR-3CDS	ENST00000397388	ENST00000506447		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5UTR-3CDS	ENST00000397388	ENST00000325971		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5UTR-3CDS	ENST00000397388	ENST00000430049		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5UTR-3UTR	ENST00000397388	ENST00000540847		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
Frame-shit	ENST00000361265	ENST00000506447		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
Frame-shit	ENST00000361265	ENST00000325971		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
Frame-shit	ENST00000361265	ENST00000430049		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5CDS-3UTR	ENST00000361265	ENST00000540847		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	AJUBA	chr14	23445854	-	CEP192	chr18	13087016	+
5UTR-3CDS	ENST00000446592	ENST00000276708		TCGA	LD	CHOL	TCGA-W6-AA0S-01A	CCDC26	chr8	130692174	-	GSDMC	chr8	130772835	-
Frame-shit	ENST00000404338	ENST00000542575		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
Frame-shit	ENST00000404338	ENST00000434726		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
Frame-shit	ENST00000404338	ENST00000594991		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
Frame-shit	ENST00000404338	ENST00000412532		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
intron-3CDS	ENST00000598548	ENST00000542575		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
intron-3CDS	ENST00000598548	ENST00000434726		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
intron-3CDS	ENST00000598548	ENST00000594991		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
intron-3CDS	ENST00000598548	ENST00000412532		TCGA	LD	CHOL	TCGA-YR-A95A-01A	ARHGAP35	chr19	47492932	+	SLC1A5	chr19	47282165	-
5CDS-3UTR	ENST00000520429	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000520429	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000520429	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000369220	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000369220	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000369220	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000520371	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000520371	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000520371	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000523799	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000523799	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000523799	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5UTR-3UTR	ENST00000523985	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5UTR-3UTR	ENST00000523985	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5UTR-3UTR	ENST00000523985	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000518714	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000518714	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000518714	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5UTR-3UTR	ENST00000521017	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5UTR-3UTR	ENST00000521017	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5UTR-3UTR	ENST00000521017	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000482541	ENST00000471864		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000482541	ENST00000484285		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000482541	ENST00000377680		TCGA	LD	CHOL	TCGA-YR-A95A-01A	CCNC	chr6	100016372	-	FAM201A	chr9	38621829	+
In-frame	ENST00000369061	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000369061	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000357555	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000357555	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000358487	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000358487	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000356226	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000356226	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000369060	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000369060	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000369059	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000369059	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
In-frame	ENST00000346997	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000346997	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000457416	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000457416	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000351936	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000351936	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000360144	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000360144	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
In-frame	ENST00000369056	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000369056	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
intron-3CDS	ENST00000490349	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
intron-intron	ENST00000490349	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
intron-3CDS	ENST00000359354	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
intron-intron	ENST00000359354	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
Frame-shit	ENST00000478859	ENST00000606080		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5CDS-intron	ENST00000478859	ENST00000538210		TCGA	LD	CHOL	TCGA-ZH-A8Y1-01A	FGFR2	chr10	123263304	-	FRK	chr6	116325161	-
5UTR-3CDS	ENST00000588552	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5UTR-3CDS	ENST00000588552	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5UTR-3CDS	ENST00000588552	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5UTR-intron	ENST00000588552	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000262963	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000262963	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000262963	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000262963	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000372412	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000372412	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000372412	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000372412	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000348075	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000348075	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000348075	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000348075	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000357368	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000357368	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000357368	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000357368	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000353284	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000353284	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000353284	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000353284	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000587303	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000587303	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000587303	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000587303	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000588012	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000588012	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000588012	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000588012	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000592099	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000592099	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
Frame-shit	ENST00000592099	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5CDS-intron	ENST00000592099	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
intron-3CDS	ENST00000590509	ENST00000344824		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
intron-3CDS	ENST00000590509	ENST00000538887		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
intron-3CDS	ENST00000590509	ENST00000300933		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
intron-intron	ENST00000590509	ENST00000591645		TCGA	LD	CHOL	TCGA-ZH-A8Y8-01A	PTPRS	chr19	5265019	-	TPM4	chr19	16198837	+
5UTR-5UTR	ENST00000381298	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000381298	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000336909	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381287	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000502326	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381294	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000536319	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381293	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000381286	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000522633	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
intron-5UTR	ENST00000396816	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000520984		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000311212		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000519744		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000517844		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000520347		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000519882		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000521272		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
5UTR-5UTR	ENST00000577363	ENST00000518336		TCGA	LD	CHOL	TCGA-ZU-A8S4-01A	IL6ST	chr5	55290612	-	ZNF706	chr8	102213971	-
In-frame	ENST00000376542	ENST00000262460		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
5CDS-3UTR	ENST00000376542	ENST00000429262		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
5CDS-intron	ENST00000376542	ENST00000484893		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
In-frame	ENST00000339157	ENST00000262460		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
5CDS-3UTR	ENST00000339157	ENST00000429262		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
5CDS-intron	ENST00000339157	ENST00000484893		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
intron-3CDS	ENST00000481556	ENST00000262460		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
intron-3UTR	ENST00000481556	ENST00000429262		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
intron-intron	ENST00000481556	ENST00000484893		TCGA	RV	COAD	TCGA-AA-3660-01A	ABHD12	chr20	25371149	-	GINS1	chr20	25422338	+
5UTR-5UTR	ENST00000378330	ENST00000317147		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-5UTR	ENST00000378330	ENST00000569240		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-5UTR	ENST00000378330	ENST00000441024		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-intron	ENST00000378330	ENST00000569732		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-intron	ENST00000378330	ENST00000245138		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-5UTR	ENST00000301030	ENST00000317147		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-5UTR	ENST00000301030	ENST00000569240		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-5UTR	ENST00000301030	ENST00000441024		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-intron	ENST00000301030	ENST00000569732		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
5UTR-intron	ENST00000301030	ENST00000245138		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-5UTR	ENST00000563291	ENST00000317147		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-5UTR	ENST00000563291	ENST00000569240		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-5UTR	ENST00000563291	ENST00000441024		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-intron	ENST00000563291	ENST00000569732		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-intron	ENST00000563291	ENST00000245138		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-5UTR	ENST00000567736	ENST00000317147		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-5UTR	ENST00000567736	ENST00000569240		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-5UTR	ENST00000567736	ENST00000441024		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-intron	ENST00000567736	ENST00000569732		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
intron-intron	ENST00000567736	ENST00000245138		TCGA	RV	COAD	TCGA-A6-6650-01B	ANKRD11	chr16	89484692	-	CNOT1	chr16	58633415	-
In-frame	ENST00000283558	ENST00000438911		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000283558	ENST00000530374		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000283558	ENST00000403000		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000283558	ENST00000424149		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000283558	ENST00000306145		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000375630	ENST00000438911		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000375630	ENST00000530374		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000375630	ENST00000403000		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000375630	ENST00000424149		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000375630	ENST00000306145		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000487903	ENST00000438911		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000487903	ENST00000530374		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000487903	ENST00000403000		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000487903	ENST00000424149		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000487903	ENST00000306145		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000375645	ENST00000438911		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
In-frame	ENST00000375645	ENST00000530374		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000375645	ENST00000403000		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000375645	ENST00000424149		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
5CDS-intron	ENST00000375645	ENST00000306145		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
intron-3CDS	ENST00000419448	ENST00000438911		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
intron-3CDS	ENST00000419448	ENST00000530374		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
intron-intron	ENST00000419448	ENST00000403000		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
intron-intron	ENST00000419448	ENST00000424149		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
intron-intron	ENST00000419448	ENST00000306145		TCGA	RV	COAD	TCGA-A6-5656-01A	ATP11A	chr13	113530255	+	CYHR1	chr8	145678843	-
Frame-shit	ENST00000455895	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000455895	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000455895	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000413080	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000413080	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000413080	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000341071	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000341071	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000341071	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000526031	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000526031	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000526031	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000419121	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000419121	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000419121	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000446293	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000446293	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000446293	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
intron-3CDS	ENST00000463967	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
intron-3CDS	ENST00000463967	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
intron-intron	ENST00000463967	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000449308	ENST00000373297		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000449308	ENST00000314607		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000449308	ENST00000482131		TCGA	RV	COAD	TCGA-A6-5664-01A	BSDC1	chr1	32859681	-	ZMYM4	chr1	35824526	+
intron-intron	ENST00000593699	ENST00000315289		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000593699	ENST00000395265		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000593699	ENST00000373789		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000593699	ENST00000395260		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000372499	ENST00000315289		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000372499	ENST00000395265		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000372499	ENST00000373789		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000372499	ENST00000395260		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000496424	ENST00000315289		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000496424	ENST00000395265		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000496424	ENST00000373789		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-intron	ENST00000496424	ENST00000395260		TCGA	RV	COAD	TCGA-AD-6899-01A	C10orf11	chr10	77198252	+	RTKN2	chr10	64005816	-
intron-3CDS	ENST00000375885	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375885	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000375882	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375882	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000375865	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375865	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000375866	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000375866	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000439572	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000439572	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000452985	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000452985	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000488020	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000488020	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000413083	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000413083	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000418230	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000418230	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000458330	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000458330	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000424502	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000424502	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000443673	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000443673	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000485003	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000485003	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000429633	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000429633	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000455161	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000455161	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000422261	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422261	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000422567	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000422567	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000480866	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000480866	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000416194	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000416194	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000431476	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000431476	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000436169	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000436169	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000400116	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400116	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000383433	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383433	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000464220	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000464220	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000383431	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383431	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000383427	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000383427	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000400110	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000400110	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000428483	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000428483	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000454382	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454382	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000468132	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000468132	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000454511	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000454511	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000448596	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000448596	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000432290	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000432290	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000451917	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000451917	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000476022	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000476022	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000437010	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000437010	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000412802	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000412802	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-3CDS	ENST00000453234	ENST00000375663		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000482996		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000444930		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000435657		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000487524		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000457796		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000469542		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000211402		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000462946		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000422694		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000491232		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000424974		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000425144		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
intron-intron	ENST00000453234	ENST00000474299		TCGA	RV	COAD	TCGA-D5-6538-01A	CSNK2B	chr6	31639061	+	VARS	chr6	31760897	-
In-frame	ENST00000351989	ENST00000252137		TCGA	RV	COAD	TCGA-A6-5657-01A	DGCR8	chr22	20082318	+	DGCR14	chr22	19127242	-
In-frame	ENST00000383024	ENST00000252137		TCGA	RV	COAD	TCGA-A6-5657-01A	DGCR8	chr22	20082318	+	DGCR14	chr22	19127242	-
In-frame	ENST00000407755	ENST00000252137		TCGA	RV	COAD	TCGA-A6-5657-01A	DGCR8	chr22	20082318	+	DGCR14	chr22	19127242	-
5CDS-5UTR	ENST00000357674	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000357674	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000357674	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000357674	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000357674	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000357674	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000314062	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000314062	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000314062	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000314062	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000314062	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000314062	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000346964	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000346964	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000346964	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000346964	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000346964	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000346964	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000419354	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000419354	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000419354	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000419354	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000419354	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000419354	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000452595	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000452595	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000452595	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000452595	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000452595	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-intron	ENST00000452595	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000422288	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000422288	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000422288	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000422288	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000422288	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000422288	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000448528	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000448528	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000448528	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000448528	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000448528	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000448528	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000443183	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000443183	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000443183	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000443183	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-5UTR	ENST00000443183	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
intron-intron	ENST00000443183	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000450955	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000450955	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000450955	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000450955	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000450955	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000450955	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000392382	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000392382	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000392382	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000392382	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-5UTR	ENST00000392382	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5CDS-intron	ENST00000392382	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5UTR-5UTR	ENST00000485409	ENST00000415149		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5UTR-5UTR	ENST00000485409	ENST00000402543		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5UTR-5UTR	ENST00000485409	ENST00000325805		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5UTR-5UTR	ENST00000485409	ENST00000416476		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5UTR-5UTR	ENST00000485409	ENST00000406780		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
5UTR-intron	ENST00000485409	ENST00000473542		TCGA	RV	COAD	TCGA-G4-6297-01A	DLG1	chr3	197023217	-	BBX	chr3	107364683	+
Frame-shit	ENST00000202028	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000202028	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000373950	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000373950	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000441639	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000441639	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000373946	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000373946	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000338074	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000338074	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000373941	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000373941	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000479336	ENST00000062104		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
Frame-shit	ENST00000479336	ENST00000346199		TCGA	RV	COAD	TCGA-G4-6323-01A	EPB41L1	chr20	34800298	+	NNAT	chr20	36151069	+
intron-5UTR	ENST00000441802	ENST00000296533		TCGA	RV	COAD	TCGA-D5-5538-01A	FAT1	chr4	187647508	-	NPY1R	chr4	164247857	-
intron-5UTR	ENST00000441802	ENST00000509586		TCGA	RV	COAD	TCGA-D5-5538-01A	FAT1	chr4	187647508	-	NPY1R	chr4	164247857	-
intron-5UTR	ENST00000512347	ENST00000296533		TCGA	RV	COAD	TCGA-D5-5538-01A	FAT1	chr4	187647508	-	NPY1R	chr4	164247857	-
intron-5UTR	ENST00000512347	ENST00000509586		TCGA	RV	COAD	TCGA-D5-5538-01A	FAT1	chr4	187647508	-	NPY1R	chr4	164247857	-
5CDS-intron	ENST00000341700	ENST00000474301		TCGA	RV	COAD	TCGA-AY-6196-01A	GNA14	chr9	80262586	-	TNFSF8	chr9	117680418	-
5CDS-intron	ENST00000341700	ENST00000223795		TCGA	RV	COAD	TCGA-AY-6196-01A	GNA14	chr9	80262586	-	TNFSF8	chr9	117680418	-
intron-intron	ENST00000464095	ENST00000474301		TCGA	RV	COAD	TCGA-AY-6196-01A	GNA14	chr9	80262586	-	TNFSF8	chr9	117680418	-
intron-intron	ENST00000464095	ENST00000223795		TCGA	RV	COAD	TCGA-AY-6196-01A	GNA14	chr9	80262586	-	TNFSF8	chr9	117680418	-
Frame-shit	ENST00000268182	ENST00000379122		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
Frame-shit	ENST00000268182	ENST00000332496		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000560263		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000411539		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000379122		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000332496		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000560263		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000411539		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000379122		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000332496		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000560263		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000411539		TCGA	RV	COAD	TCGA-AY-6196-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
3UTR-3CDS	ENST00000342232	ENST00000284818		TCGA	RV	COAD	TCGA-AY-A71X-01A	JPH1	chr8	75149443	-	LY96	chr8	74922236	+
3UTR-3CDS	ENST00000342232	ENST00000518893		TCGA	RV	COAD	TCGA-AY-A71X-01A	JPH1	chr8	75149443	-	LY96	chr8	74922236	+
5UTR-3CDS	ENST00000518195	ENST00000284818		TCGA	RV	COAD	TCGA-AY-A71X-01A	JPH1	chr8	75149443	-	LY96	chr8	74922236	+
5UTR-3CDS	ENST00000518195	ENST00000518893		TCGA	RV	COAD	TCGA-AY-A71X-01A	JPH1	chr8	75149443	-	LY96	chr8	74922236	+
intron-3CDS	ENST00000377093	ENST00000337907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377093	ENST00000377464		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377093	ENST00000400907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377093	ENST00000400908		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377093	ENST00000476556		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377093	ENST00000460659		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
Frame-shit	ENST00000263934	ENST00000337907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000263934	ENST00000377464		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000263934	ENST00000400907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000263934	ENST00000400908		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000263934	ENST00000476556		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000263934	ENST00000460659		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
Frame-shit	ENST00000377086	ENST00000337907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377086	ENST00000377464		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377086	ENST00000400907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377086	ENST00000400908		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377086	ENST00000476556		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377086	ENST00000460659		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-3CDS	ENST00000377083	ENST00000337907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377083	ENST00000377464		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377083	ENST00000400907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377083	ENST00000400908		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377083	ENST00000476556		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000377083	ENST00000460659		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
Frame-shit	ENST00000377081	ENST00000337907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377081	ENST00000377464		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377081	ENST00000400907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377081	ENST00000400908		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377081	ENST00000476556		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000377081	ENST00000460659		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-3CDS	ENST00000465635	ENST00000337907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000465635	ENST00000377464		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000465635	ENST00000400907		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000465635	ENST00000400908		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000465635	ENST00000476556		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
intron-intron	ENST00000465635	ENST00000460659		TCGA	RV	COAD	TCGA-A6-5664-01A	KIF1B	chr1	10435431	+	RERE	chr1	8617582	-
5CDS-5UTR	ENST00000303400	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000303400	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000303400	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000303400	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000505177	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000505177	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000505177	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000505177	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000264750	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000264750	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000264750	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000264750	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000452175	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000452175	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000452175	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000452175	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000514708	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000514708	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000514708	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000514708	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000510794	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000510794	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000510794	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000510794	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000505839	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000505839	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000505839	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000505839	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000512289	ENST00000382952		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000512289	ENST00000290921		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000512289	ENST00000510568		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000512289	ENST00000515690		TCGA	RV	COAD	TCGA-D5-6531-01A	MAEA	chr4	1283770	+	CTBP1	chr4	1235307	-
intron-3CDS	ENST00000405088	ENST00000354216		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000369892		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000358711		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000369908		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000405088	ENST00000492660		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000354216		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000369892		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000358711		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000369908		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000471899	ENST00000492660		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000354216		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000369892		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
Frame-shit	ENST00000297508	ENST00000358711		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000369908		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000297508	ENST00000492660		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
5CDS-5UTR	ENST00000285039	ENST00000261596		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000285039	ENST00000581568		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
5CDS-5UTR	ENST00000324581	ENST00000261596		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000324581	ENST00000581568		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
5CDS-5UTR	ENST00000592688	ENST00000261596		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000592688	ENST00000581568		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
intron-5UTR	ENST00000587895	ENST00000261596		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
intron-intron	ENST00000587895	ENST00000581568		TCGA	RV	COAD	TCGA-CA-5256-01A	MYO5B	chr18	47361714	-	LPIN2	chr18	2960847	-
Frame-shit	ENST00000219022	ENST00000360184		TCGA	RV	COAD	TCGA-G4-6293-01A	OLFM4	chr13	53626192	+	DYNC1H1	chr14	102449356	+
5CDS-intron	ENST00000219022	ENST00000556791		TCGA	RV	COAD	TCGA-G4-6293-01A	OLFM4	chr13	53626192	+	DYNC1H1	chr14	102449356	+
5CDS-intron	ENST00000260766	ENST00000427662		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-intron	ENST00000260766	ENST00000369774		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-intron	ENST00000260766	ENST00000355946		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000260766	ENST00000315994		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000260766	ENST00000540321		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000260766	ENST00000538130		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-intron	ENST00000371380	ENST00000427662		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-intron	ENST00000371380	ENST00000369774		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-intron	ENST00000371380	ENST00000355946		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000371380	ENST00000315994		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000371380	ENST00000540321		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000371380	ENST00000538130		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000371385	ENST00000427662		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000371385	ENST00000369774		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000371385	ENST00000355946		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000371385	ENST00000315994		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000371385	ENST00000540321		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000371385	ENST00000538130		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000371375	ENST00000427662		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000371375	ENST00000369774		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000371375	ENST00000355946		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000371375	ENST00000315994		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000371375	ENST00000540321		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000371375	ENST00000538130		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000464214	ENST00000427662		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000464214	ENST00000369774		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-intron	ENST00000464214	ENST00000355946		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000464214	ENST00000315994		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000464214	ENST00000540321		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
intron-5UTR	ENST00000464214	ENST00000538130		TCGA	RV	COAD	TCGA-G4-6314-01A	PLCE1	chr10	95792009	+	SH3PXD2A	chr10	105365674	-
5CDS-5UTR	ENST00000230419	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000230419	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000230419	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000349241	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000349241	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000349241	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000345201	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000345201	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000345201	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000352931	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000352931	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000352931	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
intron-5UTR	ENST00000481273	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
intron-5UTR	ENST00000481273	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
intron-intron	ENST00000481273	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000476760	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000476760	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000476760	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000471863	ENST00000443035		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-5UTR	ENST00000471863	ENST00000431932		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000471863	ENST00000567323		TCGA	RV	COAD	TCGA-A6-6138-01A	PTK7	chr6	43044305	+	DENND4A	chr15	66053776	-
5CDS-intron	ENST00000409839	ENST00000367669		TCGA	RV	COAD	TCGA-D5-6536-01A	REG3A	chr2	79384133	-	RFWD2	chr1	176129420	-
5CDS-intron	ENST00000409839	ENST00000308769		TCGA	RV	COAD	TCGA-D5-6536-01A	REG3A	chr2	79384133	-	RFWD2	chr1	176129420	-
5CDS-intron	ENST00000393878	ENST00000367669		TCGA	RV	COAD	TCGA-D5-6536-01A	REG3A	chr2	79384133	-	RFWD2	chr1	176129420	-
5CDS-intron	ENST00000393878	ENST00000308769		TCGA	RV	COAD	TCGA-D5-6536-01A	REG3A	chr2	79384133	-	RFWD2	chr1	176129420	-
intron-intron	ENST00000305165	ENST00000367669		TCGA	RV	COAD	TCGA-D5-6536-01A	REG3A	chr2	79384133	-	RFWD2	chr1	176129420	-
intron-intron	ENST00000305165	ENST00000308769		TCGA	RV	COAD	TCGA-D5-6536-01A	REG3A	chr2	79384133	-	RFWD2	chr1	176129420	-
Frame-shit	ENST00000259119	ENST00000295797		TCGA	RV	COAD	TCGA-DM-A0XF-01A	SKIL	chr3	170079217	+	PRKCI	chr3	169981167	+
Frame-shit	ENST00000426052	ENST00000295797		TCGA	RV	COAD	TCGA-DM-A0XF-01A	SKIL	chr3	170079217	+	PRKCI	chr3	169981167	+
intron-3CDS	ENST00000490989	ENST00000295797		TCGA	RV	COAD	TCGA-DM-A0XF-01A	SKIL	chr3	170079217	+	PRKCI	chr3	169981167	+
Frame-shit	ENST00000413427	ENST00000295797		TCGA	RV	COAD	TCGA-DM-A0XF-01A	SKIL	chr3	170079217	+	PRKCI	chr3	169981167	+
Frame-shit	ENST00000458537	ENST00000295797		TCGA	RV	COAD	TCGA-DM-A0XF-01A	SKIL	chr3	170079217	+	PRKCI	chr3	169981167	+
5UTR-3CDS	ENST00000338244	ENST00000460006		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-3CDS	ENST00000338244	ENST00000379062		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-3UTR	ENST00000338244	ENST00000379070		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-5UTR	ENST00000338244	ENST00000535100		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3CDS	ENST00000379333	ENST00000460006		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3CDS	ENST00000379333	ENST00000379062		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3UTR	ENST00000379333	ENST00000379070		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-5UTR	ENST00000379333	ENST00000535100		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-3CDS	ENST00000424750	ENST00000460006		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-3CDS	ENST00000424750	ENST00000379062		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-3UTR	ENST00000424750	ENST00000379070		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
5UTR-5UTR	ENST00000424750	ENST00000535100		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3CDS	ENST00000468355	ENST00000460006		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3CDS	ENST00000468355	ENST00000379062		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3UTR	ENST00000468355	ENST00000379070		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-5UTR	ENST00000468355	ENST00000535100		TCGA	RV	COAD	TCGA-DM-A1HA-01A	SLC23A2	chr20	4982052	-	CDS2	chr20	5163033	+
intron-3CDS	ENST00000374919	ENST00000446394		TCGA	RV	COAD	TCGA-A6-A56B-01A	SPIN3	chrX	57021156	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000374919	ENST00000371681		TCGA	RV	COAD	TCGA-A6-A56B-01A	SPIN3	chrX	57021156	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000374919	ENST00000298068		TCGA	RV	COAD	TCGA-A6-A56B-01A	SPIN3	chrX	57021156	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000374919	ENST00000536715		TCGA	RV	COAD	TCGA-A6-A56B-01A	SPIN3	chrX	57021156	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000374919	ENST00000498446		TCGA	RV	COAD	TCGA-A6-A56B-01A	SPIN3	chrX	57021156	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000374919	ENST00000371667		TCGA	RV	COAD	TCGA-A6-A56B-01A	SPIN3	chrX	57021156	-	HECTD2	chr10	93185038	+
5CDS-5UTR	ENST00000373825	ENST00000370598		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5CDS-intron	ENST00000373825	ENST00000238918		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5CDS-intron	ENST00000373825	ENST00000546190		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5UTR-5UTR	ENST00000423325	ENST00000370598		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5UTR-intron	ENST00000423325	ENST00000238918		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5UTR-intron	ENST00000423325	ENST00000546190		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5UTR-5UTR	ENST00000373822	ENST00000370598		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5UTR-intron	ENST00000373822	ENST00000238918		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
5UTR-intron	ENST00000373822	ENST00000546190		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
intron-5UTR	ENST00000373821	ENST00000370598		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
intron-intron	ENST00000373821	ENST00000238918		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
intron-intron	ENST00000373821	ENST00000546190		TCGA	RV	COAD	TCGA-AA-3655-01A	SRPK1	chr6	35888245	-	BAI3	chr6	69347283	+
In-frame	ENST00000361421	ENST00000423902		TCGA	RV	COAD	TCGA-4T-AA8H-01A	TOX	chr8	60031445	-	CHD7	chr8	61693559	+
In-frame	ENST00000361421	ENST00000524602		TCGA	RV	COAD	TCGA-4T-AA8H-01A	TOX	chr8	60031445	-	CHD7	chr8	61693559	+
In-frame	ENST00000361421	ENST00000525508		TCGA	RV	COAD	TCGA-4T-AA8H-01A	TOX	chr8	60031445	-	CHD7	chr8	61693559	+
5CDS-intron	ENST00000361421	ENST00000529472		TCGA	RV	COAD	TCGA-4T-AA8H-01A	TOX	chr8	60031445	-	CHD7	chr8	61693559	+
3UTR-3CDS	ENST00000395996	ENST00000360863		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
3UTR-5UTR	ENST00000395996	ENST00000523287		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
3UTR-5UTR	ENST00000395996	ENST00000523437		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
3UTR-intron	ENST00000395996	ENST00000519421		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
In-frame	ENST00000358544	ENST00000360863		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
5CDS-5UTR	ENST00000358544	ENST00000523287		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
5CDS-5UTR	ENST00000358544	ENST00000523437		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
5CDS-intron	ENST00000358544	ENST00000519421		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
In-frame	ENST00000357162	ENST00000360863		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
5CDS-5UTR	ENST00000357162	ENST00000523287		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
5CDS-5UTR	ENST00000357162	ENST00000523437		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
5CDS-intron	ENST00000357162	ENST00000519421		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-3CDS	ENST00000355155	ENST00000360863		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000355155	ENST00000523287		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000355155	ENST00000523437		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-intron	ENST00000355155	ENST00000519421		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-3CDS	ENST00000441350	ENST00000360863		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000441350	ENST00000523287		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000441350	ENST00000523437		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-intron	ENST00000441350	ENST00000519421		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-3CDS	ENST00000521932	ENST00000360863		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000521932	ENST00000523287		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000521932	ENST00000523437		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-intron	ENST00000521932	ENST00000519421		TCGA	RV	COAD	TCGA-AY-A71X-01A	VPS13B	chr8	100821758	+	RGS22	chr8	101092583	-
intron-5UTR	ENST00000464611	ENST00000292123		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-5UTR	ENST00000464611	ENST00000592224		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-3UTR	ENST00000464611	ENST00000586934		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-3UTR	ENST00000464611	ENST00000454510		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-3UTR	ENST00000464611	ENST00000433404		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-intron	ENST00000464611	ENST00000588852		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-intron	ENST00000464611	ENST00000538656		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-5UTR	ENST00000331789	ENST00000292123		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-5UTR	ENST00000331789	ENST00000592224		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-3UTR	ENST00000331789	ENST00000586934		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-3UTR	ENST00000331789	ENST00000454510		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-3UTR	ENST00000331789	ENST00000433404		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-intron	ENST00000331789	ENST00000588852		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
intron-intron	ENST00000331789	ENST00000538656		TCGA	RV	COAD	TCGA-A6-6649-01A	ACTB	chr7	5567255	-	SAFB	chr19	5623150	+
In-frame	ENST00000354532	ENST00000354216		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000354532	ENST00000369892		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000354532	ENST00000358711		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000354532	ENST00000369908		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000354532	ENST00000492660		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000599846	ENST00000354216		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000599846	ENST00000369892		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000599846	ENST00000358711		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000599846	ENST00000369908		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000599846	ENST00000492660		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000354216		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000369892		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000358711		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000369908		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-intron	ENST00000596957	ENST00000492660		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000347545	ENST00000354216		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000347545	ENST00000369892		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000347545	ENST00000358711		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000347545	ENST00000369908		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000347545	ENST00000492660		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000378152	ENST00000354216		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000378152	ENST00000369892		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000378152	ENST00000358711		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000378152	ENST00000369908		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000378152	ENST00000492660		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000337665	ENST00000354216		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000337665	ENST00000369892		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000337665	ENST00000358711		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000337665	ENST00000369908		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000337665	ENST00000492660		TCGA	RV	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000589222	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000589222	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000589222	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000589222	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000589222	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000589222	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000407086	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000407086	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000407086	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000407086	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000407086	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000407086	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000390652	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000390652	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000390652	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000390652	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000390652	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000390652	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000408905	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000408905	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000408905	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000408905	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000408905	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000408905	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588462	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588462	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588462	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588462	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588462	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000588462	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000585744	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000585744	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000585744	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000585744	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000585744	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000585744	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588874	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588874	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588874	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588874	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
In-frame	ENST00000588874	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000588874	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
intron-3CDS	ENST00000585812	ENST00000570565		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
intron-3CDS	ENST00000585812	ENST00000442502		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
intron-3CDS	ENST00000585812	ENST00000340813		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
intron-3CDS	ENST00000585812	ENST00000451037		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
intron-3CDS	ENST00000585812	ENST00000285273		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
intron-5UTR	ENST00000585812	ENST00000571918		TCGA	RV	COAD	TCGA-A6-5657-01A	BCAS3	chr17	58967132	+	CA10	chr17	49731097	-
5CDS-5UTR	ENST00000341446	ENST00000538666		TCGA	RV	COAD	TCGA-AA-3660-01A	BRI3BP	chr12	125478549	+	IL22	chr12	68647274	-
5CDS-5UTR	ENST00000341446	ENST00000328087		TCGA	RV	COAD	TCGA-AA-3660-01A	BRI3BP	chr12	125478549	+	IL22	chr12	68647274	-
Frame-shit	ENST00000255608	ENST00000398665		TCGA	RV	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2015296	-	DOT1L	chr19	2226182	+
5CDS-intron	ENST00000255608	ENST00000608122		TCGA	RV	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2015296	-	DOT1L	chr19	2226182	+
intron-3CDS	ENST00000590646	ENST00000398665		TCGA	RV	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2015296	-	DOT1L	chr19	2226182	+
intron-intron	ENST00000590646	ENST00000608122		TCGA	RV	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2015296	-	DOT1L	chr19	2226182	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000537098	ENST00000396981		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000537098	ENST00000572484		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000539778	ENST00000396981		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000539778	ENST00000572484		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000566513	ENST00000396981		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000566513	ENST00000572484		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000398040	ENST00000396981		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000398040	ENST00000572484		TCGA	RV	COAD	TCGA-QL-A97D-01A	CMIP	chr16	81479146	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000524630	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000524630	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000529919	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000529919	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000399039	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000399039	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000360682	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000360682	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000361796	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000361796	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000361391	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000361391	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000530094	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000530094	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000428599	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000428599	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000361332	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000361332	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000527467	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000527467	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000415361	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000415361	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532245	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532245	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532463	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532463	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000528232	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000528232	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000529986	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000529986	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000531014	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000531014	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000358694	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000358694	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000526772	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000526772	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532787	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532787	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000533667	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000533667	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000529873	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000529873	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000525902	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000525902	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000529526	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000529526	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532649	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532649	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000426142	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000426142	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532844	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000532844	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000528621	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000528621	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000399050	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-5UTR	ENST00000399050	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000526357	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000526357	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000530748	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000530748	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000534579	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000534579	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000526938	ENST00000436147		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
intron-5UTR	ENST00000526938	ENST00000422652		TCGA	RV	COAD	TCGA-A6-A566-01A	CTNND1	chr11	57529591	+	BTBD18	chr11	57518708	-
5UTR-3CDS	ENST00000348367	ENST00000432306		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000348367	ENST00000393077		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-intron	ENST00000348367	ENST00000483122		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000423155	ENST00000432306		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000423155	ENST00000393077		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-intron	ENST00000423155	ENST00000483122		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000369425	ENST00000432306		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000369425	ENST00000393077		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-intron	ENST00000369425	ENST00000483122		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000480130	ENST00000432306		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000480130	ENST00000393077		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
5UTR-intron	ENST00000480130	ENST00000483122		TCGA	RV	COAD	TCGA-G4-6625-01A	GPAM	chr10	113942552	-	VTI1A	chr10	114286846	+
Frame-shit	ENST00000372343	ENST00000360403		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
5CDS-intron	ENST00000372343	ENST00000372183		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
5CDS-intron	ENST00000372343	ENST00000480675		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
intron-3CDS	ENST00000372339	ENST00000360403		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
intron-intron	ENST00000372339	ENST00000372183		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
intron-intron	ENST00000372339	ENST00000480675		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
intron-3CDS	ENST00000492152	ENST00000360403		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
intron-intron	ENST00000492152	ENST00000372183		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
intron-intron	ENST00000492152	ENST00000480675		TCGA	RV	COAD	TCGA-DM-A285-01A	IPO13	chr1	44426934	+	EIF2B3	chr1	45323479	-
Frame-shit	ENST00000366621	ENST00000397558		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
Frame-shit	ENST00000366621	ENST00000446727		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
5CDS-intron	ENST00000366621	ENST00000257583		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
5CDS-intron	ENST00000366621	ENST00000546857		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-3CDS	ENST00000472190	ENST00000397558		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-3CDS	ENST00000472190	ENST00000446727		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-intron	ENST00000472190	ENST00000257583		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-intron	ENST00000472190	ENST00000546857		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-3CDS	ENST00000366620	ENST00000397558		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-3CDS	ENST00000366620	ENST00000446727		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-intron	ENST00000366620	ENST00000257583		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
intron-intron	ENST00000366620	ENST00000546857		TCGA	RV	COAD	TCGA-AZ-6607-01A	KCNK1	chr1	233750272	+	CCDC64	chr12	120509426	+
5UTR-3CDS	ENST00000519728	ENST00000395996		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-3CDS	ENST00000519728	ENST00000358544		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-3CDS	ENST00000519728	ENST00000357162		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-intron	ENST00000519728	ENST00000355155		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-intron	ENST00000519728	ENST00000441350		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-intron	ENST00000519728	ENST00000521932		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-3CDS	ENST00000520220	ENST00000395996		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-3CDS	ENST00000520220	ENST00000358544		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-3CDS	ENST00000520220	ENST00000357162		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-intron	ENST00000520220	ENST00000355155		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-intron	ENST00000520220	ENST00000441350		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
5UTR-intron	ENST00000520220	ENST00000521932		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
intron-3CDS	ENST00000420292	ENST00000395996		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
intron-3CDS	ENST00000420292	ENST00000358544		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
intron-3CDS	ENST00000420292	ENST00000357162		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
intron-intron	ENST00000420292	ENST00000355155		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
intron-intron	ENST00000420292	ENST00000441350		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
intron-intron	ENST00000420292	ENST00000521932		TCGA	RV	COAD	TCGA-A6-5666-01A	LYN	chr8	56792662	+	VPS13B	chr8	100513915	+
Frame-shit	ENST00000372009	ENST00000458657		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000372009	ENST00000535358		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000372009	ENST00000444751		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000361297	ENST00000458657		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
Frame-shit	ENST00000361297	ENST00000535358		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
5CDS-3UTR	ENST00000361297	ENST00000444751		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
intron-3CDS	ENST00000477968	ENST00000458657		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
intron-3CDS	ENST00000477968	ENST00000535358		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
intron-3UTR	ENST00000477968	ENST00000444751		TCGA	RV	COAD	TCGA-AD-6890-01A	MAST2	chr1	46348067	+	C1orf228	chr1	45189794	+
5CDS-intron	ENST00000280285	ENST00000282469		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000280285	ENST00000509059		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000280285	ENST00000356031		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000280285	ENST00000440995		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000280285	ENST00000303129		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000382142	ENST00000282469		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000382142	ENST00000509059		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000382142	ENST00000356031		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000382142	ENST00000440995		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000382142	ENST00000303129		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000264934	ENST00000282469		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000264934	ENST00000509059		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000264934	ENST00000356031		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000264934	ENST00000440995		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
5CDS-intron	ENST00000264934	ENST00000303129		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
intron-intron	ENST00000510216	ENST00000282469		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
intron-intron	ENST00000510216	ENST00000509059		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
intron-intron	ENST00000510216	ENST00000356031		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
intron-intron	ENST00000510216	ENST00000440995		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
intron-intron	ENST00000510216	ENST00000303129		TCGA	RV	COAD	TCGA-DM-A1D8-01A	MTMR12	chr5	32312864	-	SPEF2	chr5	35727777	+
In-frame	ENST00000264663	ENST00000342362		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000382002		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000231423		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000513753		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000397391		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000348262		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000542609		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000310101		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000264663	ENST00000511486		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
5CDS-5UTR	ENST00000264663	ENST00000509934		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000342362		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000382002		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000231423		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000513753		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000397391		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000348262		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000542609		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000310101		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000344920	ENST00000511486		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
5CDS-5UTR	ENST00000344920	ENST00000509934		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000342362		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000382002		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000231423		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000513753		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000397391		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000348262		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000542609		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000310101		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000512996	ENST00000511486		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
5CDS-5UTR	ENST00000512996	ENST00000509934		TCGA	RV	COAD	TCGA-D5-6924-01A	NNT	chr5	43628489	+	PRLR	chr5	35072846	-
In-frame	ENST00000291041	ENST00000394806		TCGA	RV	COAD	TCGA-A6-6650-01B	PSKH1	chr16	67943609	+	C16orf87	chr16	46858394	-
In-frame	ENST00000291041	ENST00000285697		TCGA	RV	COAD	TCGA-A6-6650-01B	PSKH1	chr16	67943609	+	C16orf87	chr16	46858394	-
5CDS-5UTR	ENST00000291041	ENST00000564250		TCGA	RV	COAD	TCGA-A6-6650-01B	PSKH1	chr16	67943609	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000575198	ENST00000394806		TCGA	RV	COAD	TCGA-A6-6650-01B	PSKH1	chr16	67943609	+	C16orf87	chr16	46858394	-
intron-3CDS	ENST00000575198	ENST00000285697		TCGA	RV	COAD	TCGA-A6-6650-01B	PSKH1	chr16	67943609	+	C16orf87	chr16	46858394	-
intron-5UTR	ENST00000575198	ENST00000564250		TCGA	RV	COAD	TCGA-A6-6650-01B	PSKH1	chr16	67943609	+	C16orf87	chr16	46858394	-
5UTR-5UTR	ENST00000417201	ENST00000373840		TCGA	RV	COAD	TCGA-CM-4747-01A	RBM18	chr9	125026994	-	RAB14	chr9	123955697	-
5UTR-5UTR	ENST00000483428	ENST00000373840		TCGA	RV	COAD	TCGA-CM-4747-01A	RBM18	chr9	125026994	-	RAB14	chr9	123955697	-
5CDS-5UTR	ENST00000500597	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000500597	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000500597	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000500597	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000500597	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000500597	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000407977	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000407977	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000407977	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000407977	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000407977	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000407977	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000583753	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000583753	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000583753	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000583753	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000583753	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000583753	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000584437	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000584437	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000584437	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000584437	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000584437	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000584437	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000577716	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000577716	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000577716	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000577716	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000577716	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000577716	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000581868	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000581868	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000581868	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000581868	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000581868	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000581868	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000577625	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000577625	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000577625	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000577625	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000577625	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000577625	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000580014	ENST00000254066		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000580014	ENST00000394089		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000580014	ENST00000425707		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000580014	ENST00000394086		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000580014	ENST00000394081		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
intron-intron	ENST00000580014	ENST00000420042		TCGA	RV	COAD	TCGA-CM-6167-01A	RNF43	chr17	56492687	-	RARA	chr17	38487109	+
In-frame	ENST00000284637	ENST00000357154		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
In-frame	ENST00000284637	ENST00000357545		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
In-frame	ENST00000284637	ENST00000504953		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
In-frame	ENST00000284637	ENST00000511531		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
In-frame	ENST00000284637	ENST00000506886		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000507137		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000510741		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000502330		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000541354		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000512681		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000511269		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000535728		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000421836		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000534949		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000541637		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-5UTR	ENST00000284637	ENST00000512648		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-3CDS	ENST00000508685	ENST00000357154		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-3CDS	ENST00000508685	ENST00000357545		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-3CDS	ENST00000508685	ENST00000504953		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-3CDS	ENST00000508685	ENST00000511531		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-3CDS	ENST00000508685	ENST00000506886		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000507137		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000510741		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000502330		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000541354		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000512681		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000511269		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000535728		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000421836		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000534949		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000541637		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5UTR-5UTR	ENST00000508685	ENST00000512648		TCGA	RV	COAD	TCGA-AZ-6607-01A	SH3RF1	chr4	170057469	-	SPOCK3	chr4	167810395	-
5CDS-intron	ENST00000374232	ENST00000337530		TCGA	RV	COAD	TCGA-5M-AAT4-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000374244		TCGA	RV	COAD	TCGA-5M-AAT4-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000536272		TCGA	RV	COAD	TCGA-5M-AAT4-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000337530		TCGA	RV	COAD	TCGA-5M-AAT4-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000374244		TCGA	RV	COAD	TCGA-5M-AAT4-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000536272		TCGA	RV	COAD	TCGA-5M-AAT4-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000359655	ENST00000354185		TCGA	RV	COAD	TCGA-A6-5665-01A	SUPV3L1	chr10	70968854	+	DDX21	chr10	70723858	+
intron-intron	ENST00000483572	ENST00000354185		TCGA	RV	COAD	TCGA-A6-5665-01A	SUPV3L1	chr10	70968854	+	DDX21	chr10	70723858	+
In-frame	ENST00000344204	ENST00000406396		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
5CDS-5UTR	ENST00000344204	ENST00000589592		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
5CDS-5UTR	ENST00000344204	ENST00000326575		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
In-frame	ENST00000537187	ENST00000406396		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
5CDS-5UTR	ENST00000537187	ENST00000589592		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
5CDS-5UTR	ENST00000537187	ENST00000326575		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
In-frame	ENST00000509967	ENST00000406396		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
5CDS-5UTR	ENST00000509967	ENST00000589592		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
5CDS-5UTR	ENST00000509967	ENST00000326575		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
intron-3CDS	ENST00000515710	ENST00000406396		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
intron-5UTR	ENST00000515710	ENST00000589592		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
intron-5UTR	ENST00000515710	ENST00000326575		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
intron-3CDS	ENST00000344135	ENST00000406396		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
intron-5UTR	ENST00000344135	ENST00000589592		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
intron-5UTR	ENST00000344135	ENST00000326575		TCGA	RV	COAD	TCGA-AY-6196-01A	TRIO	chr5	14297372	+	KDSR	chr18	61006116	-
Frame-shit	ENST00000351842	ENST00000320476		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000351842	ENST00000356994		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000351842	ENST00000377533		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
5CDS-intron	ENST00000351842	ENST00000546337		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000265560	ENST00000320476		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000265560	ENST00000356994		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000265560	ENST00000377533		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
5CDS-intron	ENST00000265560	ENST00000546337		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
intron-3CDS	ENST00000488520	ENST00000320476		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
intron-3CDS	ENST00000488520	ENST00000356994		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
intron-3CDS	ENST00000488520	ENST00000377533		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
intron-intron	ENST00000488520	ENST00000546337		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000416417	ENST00000320476		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000416417	ENST00000356994		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000416417	ENST00000377533		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
5CDS-intron	ENST00000416417	ENST00000546337		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000415188	ENST00000320476		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000415188	ENST00000356994		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
Frame-shit	ENST00000415188	ENST00000377533		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
5CDS-intron	ENST00000415188	ENST00000546337		TCGA	RV	COAD	TCGA-D5-6534-01A	USP4	chr3	49362135	-	SCRIB	chr8	144877700	-
In-frame	ENST00000566780	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
5CDS-intron	ENST00000566780	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
In-frame	ENST00000406884	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
5CDS-intron	ENST00000406884	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
intron-3CDS	ENST00000539474	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
intron-intron	ENST00000539474	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
intron-3CDS	ENST00000402655	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
intron-intron	ENST00000402655	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
In-frame	ENST00000408984	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
5CDS-intron	ENST00000408984	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
In-frame	ENST00000355860	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
5CDS-intron	ENST00000355860	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
3UTR-3CDS	ENST00000565791	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
3UTR-intron	ENST00000565791	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
intron-3CDS	ENST00000569818	ENST00000302536		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
intron-intron	ENST00000569818	ENST00000563850		TCGA	RV	COAD	TCGA-A6-4105-01A	WWOX	chr16	78198186	+	VAT1L	chr16	78005747	+
5UTR-5UTR	ENST00000491507	ENST00000318789		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000491507	ENST00000475937		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000491507	ENST00000493089		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000491507	ENST00000484350		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000491507	ENST00000318779		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000491507	ENST00000491238		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000491507	ENST00000498215		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000491507	ENST00000468577		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000491507	ENST00000472382		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000477374	ENST00000318789		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000477374	ENST00000475937		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000477374	ENST00000493089		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000477374	ENST00000484350		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000477374	ENST00000318779		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000477374	ENST00000491238		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000477374	ENST00000498215		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000477374	ENST00000468577		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000477374	ENST00000472382		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-5UTR	ENST00000478296	ENST00000318789		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-5UTR	ENST00000478296	ENST00000475937		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-5UTR	ENST00000478296	ENST00000493089		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-intron	ENST00000478296	ENST00000484350		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-5UTR	ENST00000478296	ENST00000318779		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-intron	ENST00000478296	ENST00000491238		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-intron	ENST00000478296	ENST00000498215		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-intron	ENST00000478296	ENST00000468577		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
intron-intron	ENST00000478296	ENST00000472382		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000422325	ENST00000318789		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000422325	ENST00000475937		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000422325	ENST00000493089		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000422325	ENST00000484350		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-5UTR	ENST00000422325	ENST00000318779		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000422325	ENST00000491238		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000422325	ENST00000498215		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000422325	ENST00000468577		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5CDS-intron	ENST00000422325	ENST00000472382		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000400845	ENST00000318789		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000400845	ENST00000475937		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000400845	ENST00000493089		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000400845	ENST00000484350		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-5UTR	ENST00000400845	ENST00000318779		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000400845	ENST00000491238		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000400845	ENST00000498215		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000400845	ENST00000468577		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
5UTR-intron	ENST00000400845	ENST00000472382		TCGA	RV	COAD	TCGA-F4-6459-01A	ZNF717	chr3	75832457	-	FOXP1	chr3	71542706	-
Frame-shit	ENST00000338432	ENST00000242576		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000338432	ENST00000336865		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377854	ENST00000242576		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377854	ENST00000336865		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377848	ENST00000242576		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377848	ENST00000336865		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000242576		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000336865		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000242576		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000336865		TCGA	RV	COAD	TCGA-D5-5537-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-5UTR	ENST00000325006	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000325006	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000446544	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000531335	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000474594	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
5CDS-5UTR	ENST00000446212	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000490911	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000328631		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000340879		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000432678		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000431721		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000449610		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000413298		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000450045		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000446860		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000417896		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000443964		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000436134		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
intron-5UTR	ENST00000472554	ENST00000453202		TCGA	RV	COAD	TCGA-CM-4747-01A	AHCYL2	chr7	129008392	+	IP6K2	chr3	48732854	-
Frame-shit	ENST00000343245	ENST00000230173		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000343245	ENST00000367608		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000343245	ENST00000296932		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000343245	ENST00000367609		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
5CDS-intron	ENST00000343245	ENST00000545477		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000369070	ENST00000230173		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000369070	ENST00000367608		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000369070	ENST00000296932		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000369070	ENST00000367609		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-intron	ENST00000369070	ENST00000545477		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000369076	ENST00000230173		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000369076	ENST00000367608		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000369076	ENST00000296932		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000369076	ENST00000367609		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
5CDS-intron	ENST00000369076	ENST00000545477		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000360666	ENST00000230173		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000360666	ENST00000367608		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000360666	ENST00000296932		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000360666	ENST00000367609		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-intron	ENST00000360666	ENST00000545477		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000475645	ENST00000230173		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000475645	ENST00000367608		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000475645	ENST00000296932		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-3CDS	ENST00000475645	ENST00000367609		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
intron-intron	ENST00000475645	ENST00000545477		TCGA	RV	COAD	TCGA-AY-6196-01A	ATG5	chr6	106756239	-	GPR126	chr6	142736106	+
Frame-shit	ENST00000220659	ENST00000281156		TCGA	RV	COAD	TCGA-CA-6719-01A	BRF2	chr8	37704372	-	KHDRBS2	chr6	62757899	-
Frame-shit	ENST00000520601	ENST00000281156		TCGA	RV	COAD	TCGA-CA-6719-01A	BRF2	chr8	37704372	-	KHDRBS2	chr6	62757899	-
intron-3CDS	ENST00000521170	ENST00000281156		TCGA	RV	COAD	TCGA-CA-6719-01A	BRF2	chr8	37704372	-	KHDRBS2	chr6	62757899	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3810-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000327064	ENST00000305883		TCGA	RV	COAD	TCGA-CM-6167-01A	CARM1	chr19	10982598	+	KLF11	chr2	10187777	+
Frame-shit	ENST00000327064	ENST00000540845		TCGA	RV	COAD	TCGA-CM-6167-01A	CARM1	chr19	10982598	+	KLF11	chr2	10187777	+
Frame-shit	ENST00000327064	ENST00000535335		TCGA	RV	COAD	TCGA-CM-6167-01A	CARM1	chr19	10982598	+	KLF11	chr2	10187777	+
Frame-shit	ENST00000344150	ENST00000305883		TCGA	RV	COAD	TCGA-CM-6167-01A	CARM1	chr19	10982598	+	KLF11	chr2	10187777	+
Frame-shit	ENST00000344150	ENST00000540845		TCGA	RV	COAD	TCGA-CM-6167-01A	CARM1	chr19	10982598	+	KLF11	chr2	10187777	+
Frame-shit	ENST00000344150	ENST00000535335		TCGA	RV	COAD	TCGA-CM-6167-01A	CARM1	chr19	10982598	+	KLF11	chr2	10187777	+
Frame-shit	ENST00000540306	ENST00000225992		TCGA	RV	COAD	TCGA-F4-6461-01A	DHX8	chr17	41561553	+	PPY	chr17	42018582	-
Frame-shit	ENST00000540306	ENST00000591228		TCGA	RV	COAD	TCGA-F4-6461-01A	DHX8	chr17	41561553	+	PPY	chr17	42018582	-
Frame-shit	ENST00000540306	ENST00000587006		TCGA	RV	COAD	TCGA-F4-6461-01A	DHX8	chr17	41561553	+	PPY	chr17	42018582	-
Frame-shit	ENST00000262415	ENST00000225992		TCGA	RV	COAD	TCGA-F4-6461-01A	DHX8	chr17	41561553	+	PPY	chr17	42018582	-
Frame-shit	ENST00000262415	ENST00000591228		TCGA	RV	COAD	TCGA-F4-6461-01A	DHX8	chr17	41561553	+	PPY	chr17	42018582	-
Frame-shit	ENST00000262415	ENST00000587006		TCGA	RV	COAD	TCGA-F4-6461-01A	DHX8	chr17	41561553	+	PPY	chr17	42018582	-
intron-3CDS	ENST00000409063	ENST00000383768		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
intron-3CDS	ENST00000409063	ENST00000421010		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
In-frame	ENST00000312428	ENST00000383768		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
In-frame	ENST00000312428	ENST00000421010		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
In-frame	ENST00000410072	ENST00000383768		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
In-frame	ENST00000410072	ENST00000421010		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
intron-3CDS	ENST00000484183	ENST00000383768		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
intron-3CDS	ENST00000484183	ENST00000421010		TCGA	RV	COAD	TCGA-CM-5868-01A	DNAH7	chr2	196933421	-	ZCWPW2	chr3	28520305	+
Frame-shit	ENST00000317089	ENST00000262134		TCGA	RV	COAD	TCGA-CM-4743-01A	DNAJA2	chr16	46992915	-	LPCAT2	chr16	55562289	+
5CDS-intron	ENST00000317089	ENST00000565056		TCGA	RV	COAD	TCGA-CM-4743-01A	DNAJA2	chr16	46992915	-	LPCAT2	chr16	55562289	+
5CDS-5UTR	ENST00000452533	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000452533	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000452533	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000452533	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000452533	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000553257	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000553257	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000553257	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000553257	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000553257	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000549701	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000549701	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000549701	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000549701	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000549701	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000358214	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000358214	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000358214	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000358214	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000358214	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000548671	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000548671	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
3UTR-intron	ENST00000548671	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
3UTR-intron	ENST00000548671	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000548671	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000266481	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000266481	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000266481	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000266481	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000266481	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000547312	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000547312	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000547312	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000547312	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000547312	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000414834	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000414834	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000414834	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000414834	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000414834	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381000	ENST00000545802		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381000	ENST00000546076		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000381000	ENST00000544427		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000381000	ENST00000535215		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381000	ENST00000261177		TCGA	RV	COAD	TCGA-D5-6929-01A	DNM1L	chr12	32832399	+	TSPAN11	chr12	31106915	+
Frame-shit	ENST00000376460	ENST00000366943		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000376460	ENST00000307340		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
5CDS-intron	ENST00000376460	ENST00000366942		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000339416	ENST00000366943		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000339416	ENST00000307340		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
5CDS-intron	ENST00000339416	ENST00000366942		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000448493	ENST00000366943		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000448493	ENST00000307340		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
5CDS-intron	ENST00000448493	ENST00000366942		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000442173	ENST00000366943		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
Frame-shit	ENST00000442173	ENST00000307340		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
5CDS-intron	ENST00000442173	ENST00000366942		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
intron-3CDS	ENST00000461998	ENST00000366943		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
intron-3CDS	ENST00000461998	ENST00000307340		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
intron-intron	ENST00000461998	ENST00000366942		TCGA	RV	COAD	TCGA-QL-A97D-01A	DOCK9	chr13	99607689	-	USH2A	chr1	215812580	-
5CDS-5UTR	ENST00000237853	ENST00000338252		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000508830		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000359176		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000395812		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000325674		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000395813		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000510756		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000237853	ENST00000508608		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000341926		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000511049		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000309190		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000509903		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000511782		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000504465		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000348386		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000508579		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000237853	ENST00000515663		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000338252		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000508830		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000359176		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000395812		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000325674		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000395813		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000510756		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000431061	ENST00000508608		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000341926		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000511049		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000309190		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000509903		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000511782		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000504465		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000348386		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000508579		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000431061	ENST00000515663		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000338252		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000508830		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000359176		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000395812		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000325674		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000395813		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000510756		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000506628	ENST00000508608		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000341926		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000511049		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000309190		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000509903		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000511782		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000504465		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000348386		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000508579		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000506628	ENST00000515663		TCGA	RV	COAD	TCGA-DM-A1D8-01A	ELL2	chr5	95278706	-	CAST	chr5	96011243	+
intron-3CDS	ENST00000528282	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000528282	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000528282	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000528282	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000528282	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000528282	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530481	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530481	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530481	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530481	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000530481	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000530481	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000445890	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000445890	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000445890	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000445890	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000445890	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000445890	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000337057	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000337057	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000337057	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000337057	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-intron	ENST00000337057	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-intron	ENST00000337057	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530757	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530757	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530757	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530757	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000530757	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000530757	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000392427	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000392427	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000392427	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-3CDS	ENST00000392427	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-intron	ENST00000392427	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
5UTR-intron	ENST00000392427	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000368128	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000368128	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000368128	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000368128	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000368128	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000368128	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527411	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527411	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527411	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527411	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000527411	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000527411	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000524581	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000524581	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000524581	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000524581	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000524581	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000524581	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525271	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525271	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525271	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525271	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000525271	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000525271	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525193	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525193	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525193	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000525193	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000525193	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000525193	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527659	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527659	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527659	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000527659	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000527659	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000527659	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000529208	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000529208	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000529208	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000529208	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000529208	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000529208	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000531410	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000531410	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000531410	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000531410	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000531410	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000531410	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530148	ENST00000591517		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530148	ENST00000586296		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530148	ENST00000589130		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-3CDS	ENST00000530148	ENST00000396857		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000530148	ENST00000423454		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
intron-intron	ENST00000530148	ENST00000589002		TCGA	RV	COAD	TCGA-AY-6196-01A	EPB41L2	chr6	131384295	-	MAP4K1	chr19	39078457	-
Frame-shit	ENST00000396373	ENST00000326765		TCGA	RV	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12939843	+
Frame-shit	ENST00000396373	ENST00000356591		TCGA	RV	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12939843	+
3UTR-3CDS	ENST00000544715	ENST00000326765		TCGA	RV	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12939843	+
3UTR-3CDS	ENST00000544715	ENST00000356591		TCGA	RV	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12939843	+
5CDS-intron	ENST00000265755	ENST00000006777		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000265755	ENST00000318622		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000265755	ENST00000468304		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000265755	ENST00000428119		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000455841	ENST00000006777		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000455841	ENST00000318622		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000455841	ENST00000468304		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000455841	ENST00000428119		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000424337	ENST00000006777		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000424337	ENST00000318622		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000424337	ENST00000468304		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000424337	ENST00000428119		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000476977	ENST00000006777		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000476977	ENST00000318622		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000476977	ENST00000468304		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000476977	ENST00000428119		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
3UTR-intron	ENST00000489094	ENST00000006777		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
3UTR-5UTR	ENST00000489094	ENST00000318622		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
3UTR-3UTR	ENST00000489094	ENST00000468304		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
3UTR-intron	ENST00000489094	ENST00000428119		TCGA	RV	COAD	TCGA-CM-6677-01A	GTF2IRD1	chr7	73938484	+	RHBDD2	chr7	75510683	+
In-frame	ENST00000369483	ENST00000369522		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
In-frame	ENST00000369483	ENST00000369518		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
5CDS-intron	ENST00000369483	ENST00000477590		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
In-frame	ENST00000369486	ENST00000369522		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
In-frame	ENST00000369486	ENST00000369518		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
5CDS-intron	ENST00000369486	ENST00000477590		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
In-frame	ENST00000318837	ENST00000369522		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
In-frame	ENST00000318837	ENST00000369518		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
5CDS-intron	ENST00000318837	ENST00000477590		TCGA	RV	COAD	TCGA-AZ-4323-01A	IGSF3	chr1	117208906	-	SYCP1	chr1	115489867	+
5UTR-intron	ENST00000374864	ENST00000445403		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-5UTR	ENST00000374864	ENST00000373578		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000374864	ENST00000360723		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000374864	ENST00000358208		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000374864	ENST00000373567		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000374864	ENST00000373558		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000374864	ENST00000477066		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000535650	ENST00000445403		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-5UTR	ENST00000535650	ENST00000373578		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000535650	ENST00000360723		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000535650	ENST00000358208		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000535650	ENST00000373567		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000535650	ENST00000373558		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000535650	ENST00000477066		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000262650	ENST00000445403		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-5UTR	ENST00000262650	ENST00000373578		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000262650	ENST00000360723		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000262650	ENST00000358208		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000262650	ENST00000373567		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000262650	ENST00000373558		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
5UTR-intron	ENST00000262650	ENST00000477066		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-intron	ENST00000483727	ENST00000445403		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-5UTR	ENST00000483727	ENST00000373578		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-intron	ENST00000483727	ENST00000360723		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-intron	ENST00000483727	ENST00000358208		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-intron	ENST00000483727	ENST00000373567		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-intron	ENST00000483727	ENST00000373558		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-intron	ENST00000483727	ENST00000477066		TCGA	RV	COAD	TCGA-NH-A50V-01A	ITCH	chr20	32957276	+	SRC	chr20	35993607	+
intron-3CDS	ENST00000597933	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000597933	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000597933	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000597933	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
intron-intron	ENST00000597933	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000602122	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000602122	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000602122	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000602122	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000602122	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000361790	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000361790	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000361790	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000361790	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000361790	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000360798	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000360798	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000360798	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000360798	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000360798	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
In-frame	ENST00000354900	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
In-frame	ENST00000354900	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
In-frame	ENST00000354900	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
In-frame	ENST00000354900	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000354900	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000347609	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000347609	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000347609	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000347609	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000347609	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000427250	ENST00000391976		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000427250	ENST00000310931		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000427250	ENST00000391975		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000427250	ENST00000427183		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000427250	ENST00000476807		TCGA	RV	COAD	TCGA-CK-6746-01A	LSR	chr19	35758865	+	HDLBP	chr2	242202277	-
Frame-shit	ENST00000354570	ENST00000434900		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000520708		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000518759		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000360422		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000330432		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000428397		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000452687		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000229768		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000524163		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000419506		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000414028		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000435918		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000337049		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-intron	ENST00000354570	ENST00000523520		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000522555		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000354570	ENST00000522236		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
Frame-shit	ENST00000454590	ENST00000434900		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000520708		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000518759		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000360422		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000330432		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000428397		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000452687		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000229768		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000524163		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000419506		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000414028		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000435918		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000337049		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-intron	ENST00000454590	ENST00000523520		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000522555		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000454590	ENST00000522236		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
Frame-shit	ENST00000544465	ENST00000434900		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000520708		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000518759		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000360422		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000330432		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000428397		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000452687		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000229768		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000524163		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000419506		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000414028		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000435918		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000337049		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-intron	ENST00000544465	ENST00000523520		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000522555		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000544465	ENST00000522236		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
Frame-shit	ENST00000438100	ENST00000434900		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000520708		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000518759		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000360422		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000330432		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000428397		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000452687		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000229768		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000524163		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000419506		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000414028		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000435918		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000337049		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-intron	ENST00000438100	ENST00000523520		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000522555		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000438100	ENST00000522236		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-3CDS	ENST00000432797	ENST00000434900		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000520708		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000518759		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000360422		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000330432		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000428397		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000452687		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000229768		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000524163		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000419506		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000414028		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000435918		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000337049		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-intron	ENST00000432797	ENST00000523520		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000522555		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
5UTR-5UTR	ENST00000432797	ENST00000522236		TCGA	RV	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154410961	+
In-frame	ENST00000369393	ENST00000369042		TCGA	RV	COAD	TCGA-AA-3685-01A	MDN1	chr6	90380638	-	BEND3	chr6	107392154	-
In-frame	ENST00000369393	ENST00000429433		TCGA	RV	COAD	TCGA-AA-3685-01A	MDN1	chr6	90380638	-	BEND3	chr6	107392154	-
In-frame	ENST00000428876	ENST00000369042		TCGA	RV	COAD	TCGA-AA-3685-01A	MDN1	chr6	90380638	-	BEND3	chr6	107392154	-
In-frame	ENST00000428876	ENST00000429433		TCGA	RV	COAD	TCGA-AA-3685-01A	MDN1	chr6	90380638	-	BEND3	chr6	107392154	-
In-frame	ENST00000468568	ENST00000369042		TCGA	RV	COAD	TCGA-AA-3685-01A	MDN1	chr6	90380638	-	BEND3	chr6	107392154	-
In-frame	ENST00000468568	ENST00000429433		TCGA	RV	COAD	TCGA-AA-3685-01A	MDN1	chr6	90380638	-	BEND3	chr6	107392154	-
intron-5UTR	ENST00000405088	ENST00000448701		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	KLK1	chr19	51323699	-
intron-5UTR	ENST00000405088	ENST00000301420		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	KLK1	chr19	51323699	-
intron-5UTR	ENST00000471899	ENST00000448701		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	KLK1	chr19	51323699	-
intron-5UTR	ENST00000471899	ENST00000301420		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	KLK1	chr19	51323699	-
5CDS-5UTR	ENST00000297508	ENST00000448701		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	KLK1	chr19	51323699	-
5CDS-5UTR	ENST00000297508	ENST00000301420		TCGA	RV	COAD	TCGA-CK-6751-01A	MICALL2	chr7	1486349	-	KLK1	chr19	51323699	-
In-frame	ENST00000421797	ENST00000253861		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
In-frame	ENST00000421797	ENST00000539845		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000421797	ENST00000393161		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000421797	ENST00000545148		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000421797	ENST00000460346		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000421797	ENST00000541309		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000429546	ENST00000253861		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000429546	ENST00000539845		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000429546	ENST00000393161		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000429546	ENST00000545148		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000429546	ENST00000460346		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000429546	ENST00000541309		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
In-frame	ENST00000352689	ENST00000253861		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
In-frame	ENST00000352689	ENST00000539845		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000352689	ENST00000393161		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000352689	ENST00000545148		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000352689	ENST00000460346		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
5CDS-intron	ENST00000352689	ENST00000541309		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000498778	ENST00000253861		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000498778	ENST00000539845		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000498778	ENST00000393161		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000498778	ENST00000545148		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000498778	ENST00000460346		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
intron-intron	ENST00000498778	ENST00000541309		TCGA	RV	COAD	TCGA-G4-6315-01A	MKLN1	chr7	131130662	+	EXOC4	chr7	133682245	+
Frame-shit	ENST00000446906	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000446906	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000446906	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000446906	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000446906	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000446906	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
5CDS-intron	ENST00000446906	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377072	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377072	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377072	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377072	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377072	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377072	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
5CDS-intron	ENST00000377072	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000307729	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000307729	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000307729	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000307729	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000307729	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000307729	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
5CDS-intron	ENST00000307729	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377059	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377059	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377059	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377059	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377059	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000377059	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
5CDS-intron	ENST00000377059	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000495130	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000495130	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000495130	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000495130	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000495130	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000495130	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-intron	ENST00000495130	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377100	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377100	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377100	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377100	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377100	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377100	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-intron	ENST00000377100	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377091	ENST00000394919		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377091	ENST00000342444		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377091	ENST00000317168		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377091	ENST00000545550		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377091	ENST00000317126		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-3CDS	ENST00000377091	ENST00000394915		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
intron-intron	ENST00000377091	ENST00000492502		TCGA	RV	COAD	TCGA-D5-6922-01A	MLLT10	chr10	21906136	+	ASCC1	chr10	73892939	-
Frame-shit	ENST00000416426	ENST00000225893		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000416426	ENST00000561193		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000416426	ENST00000560016		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000416426	ENST00000427275		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000284073	ENST00000225893		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000284073	ENST00000561193		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000284073	ENST00000560016		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000284073	ENST00000427275		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000322684	ENST00000225893		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000322684	ENST00000561193		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000322684	ENST00000560016		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000322684	ENST00000427275		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000442934	ENST00000225893		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000442934	ENST00000561193		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000442934	ENST00000560016		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000442934	ENST00000427275		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000579180	ENST00000225893		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000579180	ENST00000561193		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000579180	ENST00000560016		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000579180	ENST00000427275		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000579505	ENST00000225893		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000579505	ENST00000561193		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000579505	ENST00000560016		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
intron-3CDS	ENST00000579505	ENST00000427275		TCGA	RV	COAD	TCGA-NH-A50U-01A	MSI2	chr17	55478832	+	HNF1B	chr17	36070671	-
Frame-shit	ENST00000381538	ENST00000509093		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000381538	ENST00000264389		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000381538	ENST00000503682		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000381538	ENST00000511653		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
5CDS-3UTR	ENST00000381538	ENST00000511708		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
In-frame	ENST00000507489	ENST00000509093		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
In-frame	ENST00000507489	ENST00000264389		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
In-frame	ENST00000507489	ENST00000503682		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
In-frame	ENST00000507489	ENST00000511653		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
5CDS-3UTR	ENST00000507489	ENST00000511708		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000329043	ENST00000509093		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000329043	ENST00000264389		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000329043	ENST00000503682		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
Frame-shit	ENST00000329043	ENST00000511653		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
5CDS-3UTR	ENST00000329043	ENST00000511708		TCGA	RV	COAD	TCGA-AZ-6601-01A	NFXL1	chr4	47892630	-	COPS4	chr4	83970319	+
5UTR-5UTR	ENST00000427836	ENST00000199940		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000427836	ENST00000360351		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000427836	ENST00000361559		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000427836	ENST00000392194		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-intron	ENST00000427836	ENST00000447185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-intron	ENST00000427836	ENST00000475600		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000389247	ENST00000199940		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000389247	ENST00000360351		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000389247	ENST00000361559		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000389247	ENST00000392194		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-intron	ENST00000389247	ENST00000447185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-intron	ENST00000389247	ENST00000475600		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000457206	ENST00000199940		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000457206	ENST00000360351		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000457206	ENST00000361559		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-5UTR	ENST00000457206	ENST00000392194		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-intron	ENST00000457206	ENST00000447185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
5UTR-intron	ENST00000457206	ENST00000475600		TCGA	RV	COAD	TCGA-DM-A1D0-01A	PLEKHM3	chr2	208890113	-	MAP2	chr2	210489777	+
Frame-shit	ENST00000580170	ENST00000350638		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000580170	ENST00000379163		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
In-frame	ENST00000580170	ENST00000395934		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000332175	ENST00000350638		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000332175	ENST00000379163		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
In-frame	ENST00000332175	ENST00000395934		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000400060	ENST00000350638		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000400060	ENST00000379163		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
In-frame	ENST00000400060	ENST00000395934		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000400053	ENST00000350638		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000400053	ENST00000379163		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
In-frame	ENST00000400053	ENST00000395934		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000444013	ENST00000350638		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
Frame-shit	ENST00000444013	ENST00000379163		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
In-frame	ENST00000444013	ENST00000395934		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
intron-3CDS	ENST00000578571	ENST00000350638		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
intron-3CDS	ENST00000578571	ENST00000379163		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
intron-3CDS	ENST00000578571	ENST00000395934		TCGA	RV	COAD	TCGA-DM-A1D6-01A	PTPRM	chr18	8143777	+	ELP4	chr11	31804941	+
In-frame	ENST00000262879	ENST00000374864		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000262879	ENST00000535650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000262879	ENST00000262650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-intron	ENST00000262879	ENST00000483727		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
In-frame	ENST00000397042	ENST00000374864		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000397042	ENST00000535650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000397042	ENST00000262650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-intron	ENST00000397042	ENST00000483727		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
In-frame	ENST00000397038	ENST00000374864		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000397038	ENST00000535650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000397038	ENST00000262650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-intron	ENST00000397038	ENST00000483727		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-3CDS	ENST00000537204	ENST00000374864		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-5UTR	ENST00000537204	ENST00000535650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-5UTR	ENST00000537204	ENST00000262650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-intron	ENST00000537204	ENST00000483727		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
In-frame	ENST00000397040	ENST00000374864		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000397040	ENST00000535650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-5UTR	ENST00000397040	ENST00000262650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-intron	ENST00000397040	ENST00000483727		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-3CDS	ENST00000490114	ENST00000374864		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-5UTR	ENST00000490114	ENST00000535650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-5UTR	ENST00000490114	ENST00000262650		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
intron-intron	ENST00000490114	ENST00000483727		TCGA	RV	COAD	TCGA-A6-2675-01A	RALGAPB	chr20	37199490	+	ITCH	chr20	33000321	+
5CDS-intron	ENST00000334062	ENST00000337221		TCGA	RV	COAD	TCGA-DM-A28A-01A	RASA3	chr13	114765061	-	SCARA3	chr8	27528417	+
5CDS-intron	ENST00000334062	ENST00000301904		TCGA	RV	COAD	TCGA-DM-A28A-01A	RASA3	chr13	114765061	-	SCARA3	chr8	27528417	+
5CDS-intron	ENST00000389544	ENST00000337221		TCGA	RV	COAD	TCGA-DM-A28A-01A	RASA3	chr13	114765061	-	SCARA3	chr8	27528417	+
5CDS-intron	ENST00000389544	ENST00000301904		TCGA	RV	COAD	TCGA-DM-A28A-01A	RASA3	chr13	114765061	-	SCARA3	chr8	27528417	+
intron-intron	ENST00000542651	ENST00000337221		TCGA	RV	COAD	TCGA-DM-A28A-01A	RASA3	chr13	114765061	-	SCARA3	chr8	27528417	+
intron-intron	ENST00000542651	ENST00000301904		TCGA	RV	COAD	TCGA-DM-A28A-01A	RASA3	chr13	114765061	-	SCARA3	chr8	27528417	+
In-frame	ENST00000356286	ENST00000448525		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
In-frame	ENST00000356286	ENST00000382745		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
In-frame	ENST00000356286	ENST00000262318		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
5CDS-intron	ENST00000356286	ENST00000566812		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
In-frame	ENST00000353660	ENST00000448525		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
In-frame	ENST00000353660	ENST00000382745		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
In-frame	ENST00000353660	ENST00000262318		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
5CDS-intron	ENST00000353660	ENST00000566812		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
Frame-shit	ENST00000382181	ENST00000448525		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
Frame-shit	ENST00000382181	ENST00000382745		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
Frame-shit	ENST00000382181	ENST00000262318		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
5CDS-intron	ENST00000382181	ENST00000566812		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000475269	ENST00000448525		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000475269	ENST00000382745		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000475269	ENST00000262318		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-intron	ENST00000475269	ENST00000566812		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000400245	ENST00000448525		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000400245	ENST00000382745		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000400245	ENST00000262318		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-intron	ENST00000400245	ENST00000566812		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000400247	ENST00000448525		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000400247	ENST00000382745		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000400247	ENST00000262318		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
intron-intron	ENST00000400247	ENST00000566812		TCGA	RV	COAD	TCGA-5M-AAT4-01A	RBCK1	chr20	400375	+	CLCN7	chr16	1509188	-
5UTR-3CDS	ENST00000398958	ENST00000373710		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000398958	ENST00000536859		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000398958	ENST00000373709		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000398958	ENST00000536384		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000398958	ENST00000491976		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000373710		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000536859		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000373709		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000536384		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000373833	ENST00000491976		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000373710		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000536859		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000373709		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000536384		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000373832	ENST00000491976		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000373710		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000536859		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000373709		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000536384		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000373831	ENST00000491976		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000373710		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000536859		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000373709		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000536384		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000429051	ENST00000491976		TCGA	RV	COAD	TCGA-CK-5916-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
In-frame	ENST00000357387	ENST00000230658		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
In-frame	ENST00000357387	ENST00000511384		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
5CDS-intron	ENST00000357387	ENST00000505475		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
In-frame	ENST00000296782	ENST00000230658		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
In-frame	ENST00000296782	ENST00000511384		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
5CDS-intron	ENST00000296782	ENST00000505475		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
intron-3CDS	ENST00000503698	ENST00000230658		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
intron-3CDS	ENST00000503698	ENST00000511384		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
intron-intron	ENST00000503698	ENST00000505475		TCGA	RV	COAD	TCGA-CA-5254-01A	RICTOR	chr5	39074213	-	ISL1	chr5	50680375	+
In-frame	ENST00000413379	ENST00000382353		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
5CDS-3UTR	ENST00000413379	ENST00000478546		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
5UTR-3CDS	ENST00000540850	ENST00000382353		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
5UTR-3UTR	ENST00000540850	ENST00000478546		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
In-frame	ENST00000598840	ENST00000382353		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
5CDS-3UTR	ENST00000598840	ENST00000478546		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
In-frame	ENST00000270225	ENST00000382353		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
5CDS-3UTR	ENST00000270225	ENST00000478546		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
In-frame	ENST00000392776	ENST00000382353		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
5CDS-3UTR	ENST00000392776	ENST00000478546		TCGA	RV	COAD	TCGA-D5-6533-01A	SAE1	chr19	47646862	+	FGF9	chr13	22275329	+
intron-3CDS	ENST00000538941	ENST00000306467		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-3CDS	ENST00000538941	ENST00000306481		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-3CDS	ENST00000538941	ENST00000328236		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-intron	ENST00000538941	ENST00000395431		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-intron	ENST00000538941	ENST00000515110		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
Frame-shit	ENST00000563290	ENST00000306467		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
Frame-shit	ENST00000563290	ENST00000306481		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
Frame-shit	ENST00000563290	ENST00000328236		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
5CDS-intron	ENST00000563290	ENST00000395431		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
5CDS-intron	ENST00000563290	ENST00000515110		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
In-frame	ENST00000324767	ENST00000306467		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
In-frame	ENST00000324767	ENST00000306481		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
In-frame	ENST00000324767	ENST00000328236		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
5CDS-intron	ENST00000324767	ENST00000395431		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
5CDS-intron	ENST00000324767	ENST00000515110		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-3CDS	ENST00000562890	ENST00000306467		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-3CDS	ENST00000562890	ENST00000306481		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-3CDS	ENST00000562890	ENST00000328236		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-intron	ENST00000562890	ENST00000395431		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
intron-intron	ENST00000562890	ENST00000515110		TCGA	RV	COAD	TCGA-AA-A02K-01A	SCAPER	chr15	77176153	-	CEP120	chr5	122685783	-
5UTR-3CDS	ENST00000394947	ENST00000261918		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
5UTR-5UTR	ENST00000394947	ENST00000542748		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
5UTR-5UTR	ENST00000394947	ENST00000543145		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
intron-3CDS	ENST00000360439	ENST00000261918		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
intron-5UTR	ENST00000360439	ENST00000542748		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
intron-5UTR	ENST00000360439	ENST00000543145		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
intron-3CDS	ENST00000394949	ENST00000261918		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
intron-5UTR	ENST00000394949	ENST00000542748		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
intron-5UTR	ENST00000394949	ENST00000543145		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
5UTR-3CDS	ENST00000567289	ENST00000261918		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
5UTR-5UTR	ENST00000567289	ENST00000542748		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
5UTR-5UTR	ENST00000567289	ENST00000543145		TCGA	RV	COAD	TCGA-F4-6461-01A	SIN3A	chr15	75743764	-	SEMA7A	chr15	74711293	-
5CDS-intron	ENST00000428135	ENST00000406775		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5CDS-intron	ENST00000428135	ENST00000342771		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5CDS-intron	ENST00000428135	ENST00000403018		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5CDS-intron	ENST00000428135	ENST00000489774		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409389	ENST00000406775		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409389	ENST00000342771		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409389	ENST00000403018		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409389	ENST00000489774		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409604	ENST00000406775		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409604	ENST00000342771		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409604	ENST00000403018		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
intron-intron	ENST00000409604	ENST00000489774		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5UTR-intron	ENST00000496855	ENST00000406775		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5UTR-intron	ENST00000496855	ENST00000342771		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5UTR-intron	ENST00000496855	ENST00000403018		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
5UTR-intron	ENST00000496855	ENST00000489774		TCGA	RV	COAD	TCGA-AZ-4323-01A	SNX13	chr7	17836450	-	AUTS2	chr7	69755354	+
In-frame	ENST00000282369	ENST00000515393		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000282369	ENST00000429576		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000282369	ENST00000312216		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000282369	ENST00000505208		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000282369	ENST00000514040		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000282369	ENST00000505078		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000513154	ENST00000515393		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000513154	ENST00000429576		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000513154	ENST00000312216		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000513154	ENST00000505208		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000513154	ENST00000514040		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000513154	ENST00000505078		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000514154	ENST00000515393		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000514154	ENST00000429576		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000514154	ENST00000312216		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
In-frame	ENST00000514154	ENST00000505208		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000514154	ENST00000514040		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000514154	ENST00000505078		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000515104	ENST00000515393		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000515104	ENST00000429576		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000515104	ENST00000312216		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000515104	ENST00000505208		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000515104	ENST00000514040		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000515104	ENST00000505078		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379618	ENST00000515393		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379618	ENST00000429576		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379618	ENST00000312216		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379618	ENST00000505208		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000379618	ENST00000514040		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000379618	ENST00000505078		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379617	ENST00000515393		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379617	ENST00000429576		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379617	ENST00000312216		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000379617	ENST00000505208		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000379617	ENST00000514040		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000379617	ENST00000505078		TCGA	RV	COAD	TCGA-DM-A280-01A	TRIM36	chr5	114480295	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000331569	ENST00000484427		TCGA	RV	COAD	TCGA-CM-5344-01A	ZNF703	chr8	37557537	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000331569	ENST00000371764		TCGA	RV	COAD	TCGA-CM-5344-01A	ZNF703	chr8	37557537	+	DDX27	chr20	47849303	+
Frame-shit	ENST00000353139	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000353139	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000353139	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000353139	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000353139	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000353139	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000360679	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000360679	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000360679	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000360679	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000360679	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000360679	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000394406	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000394406	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000394406	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000394406	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000394406	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000394406	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000335166	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000335166	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000335166	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000335166	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000335166	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
In-frame	ENST00000335166	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000416895	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000416895	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000416895	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000416895	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000416895	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000416895	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000361253	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000361253	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000361253	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000361253	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000361253	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000361253	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000588142	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000588142	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000588142	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000588142	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000588142	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000588142	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000589665	ENST00000360317		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000589665	ENST00000394175		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000589665	ENST00000309481		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000589665	ENST00000520542		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000589665	ENST00000418519		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000589665	ENST00000394179		TCGA	RV	COAD	TCGA-D5-6929-01A	ACACA	chr17	35627642	-	GSDMB	chr17	38068750	-
5CDS-intron	ENST00000331925	ENST00000360359		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000535627		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000470698		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000360359		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000535627		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000470698		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000360359		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000535627		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000470698		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000360359		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000535627		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000470698		TCGA	RV	COAD	TCGA-D5-6931-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000354185		TCGA	RV	COAD	TCGA-D5-6923-01A	ACTG1	chr17	79476999	-	DDX21	chr10	70723858	+
intron-intron	ENST00000573283	ENST00000354185		TCGA	RV	COAD	TCGA-D5-6923-01A	ACTG1	chr17	79476999	-	DDX21	chr10	70723858	+
intron-intron	ENST00000575842	ENST00000354185		TCGA	RV	COAD	TCGA-D5-6923-01A	ACTG1	chr17	79476999	-	DDX21	chr10	70723858	+
intron-intron	ENST00000575087	ENST00000354185		TCGA	RV	COAD	TCGA-D5-6923-01A	ACTG1	chr17	79476999	-	DDX21	chr10	70723858	+
Frame-shit	ENST00000371839	ENST00000396153		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
Frame-shit	ENST00000371839	ENST00000371778		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
5CDS-intron	ENST00000371839	ENST00000545823		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
5CDS-intron	ENST00000371839	ENST00000472808		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
Frame-shit	ENST00000371838	ENST00000396153		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
Frame-shit	ENST00000371838	ENST00000371778		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
5CDS-intron	ENST00000371838	ENST00000545823		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
5CDS-intron	ENST00000371838	ENST00000472808		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
Frame-shit	ENST00000371836	ENST00000396153		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
Frame-shit	ENST00000371836	ENST00000371778		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
5CDS-intron	ENST00000371836	ENST00000545823		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
5CDS-intron	ENST00000371836	ENST00000472808		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-3CDS	ENST00000334103	ENST00000396153		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-3CDS	ENST00000334103	ENST00000371778		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-intron	ENST00000334103	ENST00000545823		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-intron	ENST00000334103	ENST00000472808		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-3CDS	ENST00000497451	ENST00000396153		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-3CDS	ENST00000497451	ENST00000371778		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-intron	ENST00000497451	ENST00000545823		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
intron-intron	ENST00000497451	ENST00000472808		TCGA	RV	COAD	TCGA-CK-4952-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51210447	-
3UTR-3CDS	ENST00000426898	ENST00000256404		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
3UTR-5UTR	ENST00000426898	ENST00000521284		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
Frame-shit	ENST00000425752	ENST00000256404		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
5CDS-5UTR	ENST00000425752	ENST00000521284		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
Frame-shit	ENST00000423947	ENST00000256404		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
5CDS-5UTR	ENST00000423947	ENST00000521284		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
Frame-shit	ENST00000435642	ENST00000256404		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
5CDS-5UTR	ENST00000435642	ENST00000521284		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
Frame-shit	ENST00000320560	ENST00000256404		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
5CDS-5UTR	ENST00000320560	ENST00000521284		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
intron-3CDS	ENST00000441606	ENST00000256404		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
intron-5UTR	ENST00000441606	ENST00000521284		TCGA	RV	COAD	TCGA-CM-5868-01A	ANO6	chr12	45610174	+	PEBP4	chr8	22675248	-
In-frame	ENST00000319670	ENST00000373511		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000319670	ENST00000373498		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000319670	ENST00000350766		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000319670	ENST00000373503		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000319670	ENST00000394063		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000319670	ENST00000265960		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000319670	ENST00000373497		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
5CDS-intron	ENST00000319670	ENST00000394060		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
5CDS-5UTR	ENST00000319670	ENST00000483937		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000373511		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000373498		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000350766		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000373503		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000394063		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000265960		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
In-frame	ENST00000359920	ENST00000373497		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
5CDS-intron	ENST00000359920	ENST00000394060		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
5CDS-5UTR	ENST00000359920	ENST00000483937		TCGA	RV	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128230388	-
5UTR-3CDS	ENST00000282050	ENST00000282058		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
5UTR-intron	ENST00000282050	ENST00000585518		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
5UTR-3UTR	ENST00000282050	ENST00000588704		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3CDS	ENST00000593152	ENST00000282058		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-intron	ENST00000593152	ENST00000585518		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3UTR	ENST00000593152	ENST00000588704		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3CDS	ENST00000590665	ENST00000282058		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-intron	ENST00000590665	ENST00000585518		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3UTR	ENST00000590665	ENST00000588704		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3CDS	ENST00000398752	ENST00000282058		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-intron	ENST00000398752	ENST00000585518		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3UTR	ENST00000398752	ENST00000588704		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3CDS	ENST00000591267	ENST00000282058		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-intron	ENST00000591267	ENST00000585518		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
intron-3UTR	ENST00000591267	ENST00000588704		TCGA	RV	COAD	TCGA-CM-5348-01A	ATP5A1	chr18	43684103	-	HAUS1	chr18	43698147	+
Frame-shit	ENST00000220659	ENST00000358138		TCGA	RV	COAD	TCGA-AZ-6607-01A	BRF2	chr8	37706114	-	C8orf86	chr8	38370157	-
5CDS-intron	ENST00000220659	ENST00000437935		TCGA	RV	COAD	TCGA-AZ-6607-01A	BRF2	chr8	37706114	-	C8orf86	chr8	38370157	-
Frame-shit	ENST00000520601	ENST00000358138		TCGA	RV	COAD	TCGA-AZ-6607-01A	BRF2	chr8	37706114	-	C8orf86	chr8	38370157	-
5CDS-intron	ENST00000520601	ENST00000437935		TCGA	RV	COAD	TCGA-AZ-6607-01A	BRF2	chr8	37706114	-	C8orf86	chr8	38370157	-
Frame-shit	ENST00000521170	ENST00000358138		TCGA	RV	COAD	TCGA-AZ-6607-01A	BRF2	chr8	37706114	-	C8orf86	chr8	38370157	-
5CDS-intron	ENST00000521170	ENST00000437935		TCGA	RV	COAD	TCGA-AZ-6607-01A	BRF2	chr8	37706114	-	C8orf86	chr8	38370157	-
intron-intron	ENST00000267485	ENST00000517939		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000267485	ENST00000517781		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000267485	ENST00000378439		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000267485	ENST00000276659		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-intron	ENST00000334342	ENST00000517939		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000334342	ENST00000517781		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000334342	ENST00000378439		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000334342	ENST00000276659		TCGA	RV	COAD	TCGA-AY-6196-01A	C14orf37	chr14	58764673	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000396946	ENST00000332435		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-5UTR	ENST00000396946	ENST00000376782		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-5UTR	ENST00000396946	ENST00000359374		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-5UTR	ENST00000396946	ENST00000376785		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-3UTR	ENST00000396946	ENST00000463141		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000443494		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000437507		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000443142		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000453694		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000471263		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000455948		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000428913		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000446493		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000451875		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000472459		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000437373		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000431032		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000433264		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000432545		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000459984		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000432904		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000420100		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000432227		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000444027		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000476397		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000400662		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000383613		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000400660		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000400659		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000476699		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000417738		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000429558		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000441251		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000431416		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000477956		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000417275		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000444794		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000442585		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000412396		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
5UTR-intron	ENST00000396946	ENST00000484119		TCGA	RV	COAD	TCGA-DM-A28F-01A	CARD11	chr7	3083301	-	ZNRD1	chr6	30029292	+
Frame-shit	ENST00000181839	ENST00000005257		TCGA	RV	COAD	TCGA-5M-AATA-01A	CDK13	chr7	40041630	+	RALA	chr7	39745722	+
5CDS-3UTR	ENST00000181839	ENST00000468201		TCGA	RV	COAD	TCGA-5M-AATA-01A	CDK13	chr7	40041630	+	RALA	chr7	39745722	+
Frame-shit	ENST00000340829	ENST00000005257		TCGA	RV	COAD	TCGA-5M-AATA-01A	CDK13	chr7	40041630	+	RALA	chr7	39745722	+
5CDS-3UTR	ENST00000340829	ENST00000468201		TCGA	RV	COAD	TCGA-5M-AATA-01A	CDK13	chr7	40041630	+	RALA	chr7	39745722	+
3UTR-3CDS	ENST00000484589	ENST00000005257		TCGA	RV	COAD	TCGA-5M-AATA-01A	CDK13	chr7	40041630	+	RALA	chr7	39745722	+
3UTR-3UTR	ENST00000484589	ENST00000468201		TCGA	RV	COAD	TCGA-5M-AATA-01A	CDK13	chr7	40041630	+	RALA	chr7	39745722	+
In-frame	ENST00000257209	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000257209	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000257209	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000257209	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000445677	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000445677	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000445677	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000445677	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000590592	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000590592	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000590592	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000590592	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000359247	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000359247	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000359247	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000359247	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000591635	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000591635	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000591635	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000591635	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000592128	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
In-frame	ENST00000592128	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-5UTR	ENST00000592128	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
5CDS-intron	ENST00000592128	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
intron-3CDS	ENST00000587493	ENST00000431530		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
intron-3CDS	ENST00000587493	ENST00000380808		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
intron-5UTR	ENST00000587493	ENST00000542829		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
intron-intron	ENST00000587493	ENST00000400542		TCGA	RV	COAD	TCGA-DM-A1HA-01A	FHOD3	chr18	34340745	+	MTUS2	chr13	30054287	+
Frame-shit	ENST00000251808	ENST00000521689		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000251808	ENST00000254898		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000251808	ENST00000524308		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000251808	ENST00000522025		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000251808	ENST00000520016		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
5CDS-intron	ENST00000251808	ENST00000518238		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000395927	ENST00000521689		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000395927	ENST00000254898		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000395927	ENST00000524308		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000395927	ENST00000522025		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000395927	ENST00000520016		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
5CDS-intron	ENST00000395927	ENST00000518238		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
intron-3CDS	ENST00000517674	ENST00000521689		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
intron-3CDS	ENST00000517674	ENST00000254898		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
intron-3CDS	ENST00000517674	ENST00000524308		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
intron-3CDS	ENST00000517674	ENST00000522025		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
intron-3CDS	ENST00000517674	ENST00000520016		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
intron-intron	ENST00000517674	ENST00000518238		TCGA	RV	COAD	TCGA-AZ-6608-01A	GRHL2	chr8	102661727	+	MATN2	chr8	98991114	+
Frame-shit	ENST00000374864	ENST00000373606		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
In-frame	ENST00000374864	ENST00000397156		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000374864	ENST00000397150		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000374864	ENST00000397152		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000374864	ENST00000373605		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000374864	ENST00000397151		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000535650	ENST00000373606		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000535650	ENST00000397156		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000535650	ENST00000397150		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000535650	ENST00000397152		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000535650	ENST00000373605		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000535650	ENST00000397151		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
Frame-shit	ENST00000262650	ENST00000373606		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
In-frame	ENST00000262650	ENST00000397156		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000262650	ENST00000397150		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000262650	ENST00000397152		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000262650	ENST00000373605		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
5CDS-3UTR	ENST00000262650	ENST00000397151		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000483727	ENST00000373606		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000483727	ENST00000397156		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000483727	ENST00000397150		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000483727	ENST00000397152		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000483727	ENST00000373605		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000483727	ENST00000397151		TCGA	RV	COAD	TCGA-CM-6170-01A	ITCH	chr20	32996598	+	MANBAL	chr20	35944711	+
intron-intron	ENST00000540661	ENST00000354185		TCGA	RV	COAD	TCGA-A6-6648-01A	MTMR6	chr13	25821372	-	DDX21	chr10	70723858	+
intron-intron	ENST00000381801	ENST00000354185		TCGA	RV	COAD	TCGA-A6-6648-01A	MTMR6	chr13	25821372	-	DDX21	chr10	70723858	+
intron-intron	ENST00000482345	ENST00000354185		TCGA	RV	COAD	TCGA-A6-6648-01A	MTMR6	chr13	25821372	-	DDX21	chr10	70723858	+
In-frame	ENST00000038176	ENST00000361421		TCGA	RV	COAD	TCGA-G4-6626-01A	NSMAF	chr8	59572132	-	TOX	chr8	59764364	-
intron-3CDS	ENST00000427130	ENST00000361421		TCGA	RV	COAD	TCGA-G4-6626-01A	NSMAF	chr8	59572132	-	TOX	chr8	59764364	-
intron-3CDS	ENST00000519858	ENST00000361421		TCGA	RV	COAD	TCGA-G4-6626-01A	NSMAF	chr8	59572132	-	TOX	chr8	59764364	-
In-frame	ENST00000438045	ENST00000265734		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
In-frame	ENST00000438045	ENST00000424848		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
5CDS-intron	ENST00000438045	ENST00000491250		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
In-frame	ENST00000248633	ENST00000265734		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
In-frame	ENST00000248633	ENST00000424848		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
5CDS-intron	ENST00000248633	ENST00000491250		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
In-frame	ENST00000428214	ENST00000265734		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
In-frame	ENST00000428214	ENST00000424848		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
5CDS-intron	ENST00000428214	ENST00000491250		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
intron-3CDS	ENST00000541751	ENST00000265734		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
intron-3CDS	ENST00000541751	ENST00000424848		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
intron-intron	ENST00000541751	ENST00000491250		TCGA	RV	COAD	TCGA-AA-3697-01A	PEX1	chr7	92157621	-	CDK6	chr7	92355107	-
5CDS-5UTR	ENST00000338368	ENST00000519846		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000338368	ENST00000518592		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000338368	ENST00000325897		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000338368	ENST00000518858		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000314191	ENST00000519846		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000314191	ENST00000518592		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000314191	ENST00000325897		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000314191	ENST00000518858		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5UTR-5UTR	ENST00000523565	ENST00000519846		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5UTR-intron	ENST00000523565	ENST00000518592		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5UTR-5UTR	ENST00000523565	ENST00000325897		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
5UTR-intron	ENST00000523565	ENST00000518858		TCGA	RV	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62212236	+
intron-3CDS	ENST00000380393	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000380393	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000380393	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000380393	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000380393	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-5UTR	ENST00000380393	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000216877	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000216877	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000216877	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000216877	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000216877	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-5UTR	ENST00000216877	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000358719	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000358719	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000358719	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000358719	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000358719	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-5UTR	ENST00000358719	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000399903	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000399903	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000399903	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000399903	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000399903	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-5UTR	ENST00000399903	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000425918	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000425918	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000425918	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000425918	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000425918	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-5UTR	ENST00000425918	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000318266	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000318266	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000318266	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000318266	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-3CDS	ENST00000318266	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
5UTR-5UTR	ENST00000318266	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000356147	ENST00000473997		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000356147	ENST00000346416		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000356147	ENST00000339269		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000356147	ENST00000357886		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-3CDS	ENST00000356147	ENST00000544843		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
intron-5UTR	ENST00000356147	ENST00000477105		TCGA	RV	COAD	TCGA-A6-2677-01B	PTPRA	chr20	2854406	+	CDK5RAP1	chr20	31975339	-
Frame-shit	ENST00000409535	ENST00000354883		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
Frame-shit	ENST00000409535	ENST00000336733		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
5CDS-3UTR	ENST00000409535	ENST00000536651		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
5CDS-3UTR	ENST00000409535	ENST00000413054		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
5CDS-3UTR	ENST00000409535	ENST00000484768		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
Frame-shit	ENST00000296477	ENST00000354883		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
Frame-shit	ENST00000296477	ENST00000336733		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
5CDS-3UTR	ENST00000296477	ENST00000536651		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
5CDS-3UTR	ENST00000296477	ENST00000413054		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
5CDS-3UTR	ENST00000296477	ENST00000484768		TCGA	RV	COAD	TCGA-AD-6899-01A	RAD54L2	chr3	51669805	+	SLC25A26	chr3	66312475	+
Frame-shit	ENST00000357277	ENST00000380122		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
In-frame	ENST00000357277	ENST00000398155		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
5CDS-3UTR	ENST00000357277	ENST00000485153		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
Frame-shit	ENST00000303843	ENST00000380122		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
In-frame	ENST00000303843	ENST00000398155		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
5CDS-3UTR	ENST00000303843	ENST00000485153		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
Frame-shit	ENST00000380064	ENST00000380122		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
In-frame	ENST00000380064	ENST00000398155		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
5CDS-3UTR	ENST00000380064	ENST00000485153		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
intron-3CDS	ENST00000469714	ENST00000380122		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
intron-3CDS	ENST00000469714	ENST00000398155		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
intron-3UTR	ENST00000469714	ENST00000485153		TCGA	RV	COAD	TCGA-AZ-4614-01A	REPS2	chrX	17047746	+	TXLNG	chrX	16859551	+
Frame-shit	ENST00000508628	ENST00000361193		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000508628	ENST00000411502		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000508628	ENST00000546047		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000571602		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000572725		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000361193		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000411502		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000546047		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000571602		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000572725		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000582970	ENST00000361193		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000582970	ENST00000411502		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000582970	ENST00000546047		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000571602		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000572725		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000361193		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000411502		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000546047		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000571602		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000572725		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000336301	ENST00000361193		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000336301	ENST00000411502		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000336301	ENST00000546047		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000571602		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000572725		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000361193		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000411502		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000546047		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000571602		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000572725		TCGA	RV	COAD	TCGA-CA-6716-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-5UTR	ENST00000343638	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000343638	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000343638	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000343638	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000343638	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000343638	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000302904	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000302904	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000302904	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000302904	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000302904	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000302904	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000527034	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000527034	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000527034	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000527034	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000527034	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000527034	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000533177	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000533177	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000533177	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000533177	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000533177	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000533177	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000436088	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000436088	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000436088	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000436088	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000436088	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000436088	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000393606	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000393606	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000393606	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000393606	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000393606	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000393606	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000529383	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000529383	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000529383	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000529383	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000529383	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000529383	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000526094	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000526094	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000526094	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000526094	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-5UTR	ENST00000526094	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
5CDS-intron	ENST00000526094	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000537550	ENST00000570565		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000537550	ENST00000442502		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000537550	ENST00000340813		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000537550	ENST00000451037		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000537550	ENST00000285273		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
intron-intron	ENST00000537550	ENST00000571918		TCGA	RV	COAD	TCGA-DM-A0XF-01A	UBTF	chr17	42286720	-	CA10	chr17	50008492	-
Frame-shit	ENST00000373297	ENST00000455895		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
Frame-shit	ENST00000373297	ENST00000413080		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
Frame-shit	ENST00000373297	ENST00000341071		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000373297	ENST00000526031		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000373297	ENST00000419121		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000373297	ENST00000446293		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000373297	ENST00000463967		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000373297	ENST00000449308		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
Frame-shit	ENST00000314607	ENST00000455895		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
Frame-shit	ENST00000314607	ENST00000413080		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
Frame-shit	ENST00000314607	ENST00000341071		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000314607	ENST00000526031		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000314607	ENST00000419121		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000314607	ENST00000446293		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000314607	ENST00000463967		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
5CDS-intron	ENST00000314607	ENST00000449308		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-3CDS	ENST00000482131	ENST00000455895		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-3CDS	ENST00000482131	ENST00000413080		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-3CDS	ENST00000482131	ENST00000341071		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-intron	ENST00000482131	ENST00000526031		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-intron	ENST00000482131	ENST00000419121		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-intron	ENST00000482131	ENST00000446293		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-intron	ENST00000482131	ENST00000463967		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
intron-intron	ENST00000482131	ENST00000449308		TCGA	RV	COAD	TCGA-A6-5664-01A	ZMYM4	chr1	35791006	+	BSDC1	chr1	32852496	-
In-frame	ENST00000311637	ENST00000357199		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
Frame-shit	ENST00000311637	ENST00000289953		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
In-frame	ENST00000338821	ENST00000357199		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
Frame-shit	ENST00000338821	ENST00000289953		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
In-frame	ENST00000402822	ENST00000357199		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
Frame-shit	ENST00000402822	ENST00000289953		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
intron-3CDS	ENST00000477492	ENST00000357199		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
intron-3CDS	ENST00000477492	ENST00000289953		TCGA	RV	COAD	TCGA-AD-6965-01A	ATP9A	chr20	50286536	-	WFDC8	chr20	44190858	-
Frame-shit	ENST00000338205	ENST00000375464		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000338205	ENST00000488630		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
Frame-shit	ENST00000259335	ENST00000375464		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000259335	ENST00000488630		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
5UTR-3CDS	ENST00000374378	ENST00000375464		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
5UTR-intron	ENST00000374378	ENST00000488630		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
intron-3CDS	ENST00000465499	ENST00000375464		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
intron-intron	ENST00000465499	ENST00000488630		TCGA	RV	COAD	TCGA-AY-6196-01A	KIAA0368	chr9	114145491	-	C9orf89	chr9	95869956	+
In-frame	ENST00000275034	ENST00000275036		TCGA	RV	COAD	TCGA-AA-A02K-01A	PHIP	chr6	79752560	-	HMGN3	chr6	79924739	-
In-frame	ENST00000275034	ENST00000344726		TCGA	RV	COAD	TCGA-AA-A02K-01A	PHIP	chr6	79752560	-	HMGN3	chr6	79924739	-
intron-3CDS	ENST00000479165	ENST00000275036		TCGA	RV	COAD	TCGA-AA-A02K-01A	PHIP	chr6	79752560	-	HMGN3	chr6	79924739	-
intron-3CDS	ENST00000479165	ENST00000344726		TCGA	RV	COAD	TCGA-AA-A02K-01A	PHIP	chr6	79752560	-	HMGN3	chr6	79924739	-
Frame-shit	ENST00000443326	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443326	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443326	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443326	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443326	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000443326	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000443326	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000443326	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000443326	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000414585	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000414585	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000414585	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000414585	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000414585	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000414585	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000414585	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000414585	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000414585	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000540643	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000540643	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000540643	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000540643	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000540643	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000540643	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000540643	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000540643	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000540643	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000432498	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000432498	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000432498	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000432498	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000432498	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000432498	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000432498	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000432498	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000432498	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443011	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443011	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443011	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443011	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000443011	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000443011	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000443011	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000443011	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000443011	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400289	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400289	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400289	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400289	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400289	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000400289	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000400289	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000400289	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000400289	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400288	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400288	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400288	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400288	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
Frame-shit	ENST00000400288	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000400288	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000400288	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000400288	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000400288	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000474741	ENST00000403222		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000474741	ENST00000407373		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000474741	ENST00000332585		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000474741	ENST00000382310		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000474741	ENST00000446658		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000474741	ENST00000401475		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000474741	ENST00000437268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000474741	ENST00000535268		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000474741	ENST00000496575		TCGA	RV	COAD	TCGA-DM-A1D7-01A	SFI1	chr22	31904362	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000392011	ENST00000401884		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
5UTR-3CDS	ENST00000392011	ENST00000342631		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
5UTR-3CDS	ENST00000392011	ENST00000405547		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
5UTR-3CDS	ENST00000392011	ENST00000310397		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
5UTR-intron	ENST00000392011	ENST00000469006		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000409212	ENST00000401884		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000409212	ENST00000342631		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000409212	ENST00000405547		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000409212	ENST00000310397		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-intron	ENST00000409212	ENST00000469006		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000344528	ENST00000401884		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000344528	ENST00000342631		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000344528	ENST00000405547		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000344528	ENST00000310397		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-intron	ENST00000344528	ENST00000469006		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000489601	ENST00000401884		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000489601	ENST00000342631		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000489601	ENST00000405547		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-3CDS	ENST00000489601	ENST00000310397		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
intron-intron	ENST00000489601	ENST00000469006		TCGA	RV	COAD	TCGA-A6-2684-01A	SH3BP4	chr2	235860814	+	SNED1	chr2	241973152	+
Frame-shit	ENST00000272313	ENST00000394555		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000272313	ENST00000394554		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000272313	ENST00000424836		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000272313	ENST00000355426		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
5CDS-intron	ENST00000272313	ENST00000497698		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000407823	ENST00000394555		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000407823	ENST00000394554		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000407823	ENST00000424836		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000407823	ENST00000355426		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
5CDS-intron	ENST00000407823	ENST00000497698		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000345102	ENST00000394555		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000345102	ENST00000394554		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000345102	ENST00000424836		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
Frame-shit	ENST00000345102	ENST00000355426		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
5CDS-intron	ENST00000345102	ENST00000497698		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
intron-3CDS	ENST00000477749	ENST00000394555		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
intron-3CDS	ENST00000477749	ENST00000394554		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
intron-3CDS	ENST00000477749	ENST00000424836		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
intron-3CDS	ENST00000477749	ENST00000355426		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
intron-intron	ENST00000477749	ENST00000497698		TCGA	RV	COAD	TCGA-DM-A288-01A	SMEK2	chr2	55842587	-	EFEMP1	chr2	56108869	-
intron-3CDS	ENST00000515837	ENST00000306078		TCGA	RV	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160151	+	KCNG3	chr2	42671719	-
intron-3CDS	ENST00000515837	ENST00000394973		TCGA	RV	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160151	+	KCNG3	chr2	42671719	-
intron-3CDS	ENST00000334888	ENST00000306078		TCGA	RV	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160151	+	KCNG3	chr2	42671719	-
intron-3CDS	ENST00000334888	ENST00000394973		TCGA	RV	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160151	+	KCNG3	chr2	42671719	-
5UTR-3CDS	ENST00000398979	ENST00000306078		TCGA	RV	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160151	+	KCNG3	chr2	42671719	-
5UTR-3CDS	ENST00000398979	ENST00000394973		TCGA	RV	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160151	+	KCNG3	chr2	42671719	-
Frame-shit	ENST00000409119	ENST00000373610		TCGA	RV	COAD	TCGA-A6-6648-01A	TNFRSF14	chr1	2489907	+	TXLNA	chr1	32659666	+
Frame-shit	ENST00000409119	ENST00000373609		TCGA	RV	COAD	TCGA-A6-6648-01A	TNFRSF14	chr1	2489907	+	TXLNA	chr1	32659666	+
Frame-shit	ENST00000355716	ENST00000373610		TCGA	RV	COAD	TCGA-A6-6648-01A	TNFRSF14	chr1	2489907	+	TXLNA	chr1	32659666	+
Frame-shit	ENST00000355716	ENST00000373609		TCGA	RV	COAD	TCGA-A6-6648-01A	TNFRSF14	chr1	2489907	+	TXLNA	chr1	32659666	+
3UTR-3CDS	ENST00000442392	ENST00000373610		TCGA	RV	COAD	TCGA-A6-6648-01A	TNFRSF14	chr1	2489907	+	TXLNA	chr1	32659666	+
3UTR-3CDS	ENST00000442392	ENST00000373609		TCGA	RV	COAD	TCGA-A6-6648-01A	TNFRSF14	chr1	2489907	+	TXLNA	chr1	32659666	+
In-frame	ENST00000430559	ENST00000267328		TCGA	RV	COAD	TCGA-DM-A1D7-01A	TNFSF13B	chr13	108922772	+	RAB20	chr13	111176544	-
In-frame	ENST00000375887	ENST00000267328		TCGA	RV	COAD	TCGA-DM-A1D7-01A	TNFSF13B	chr13	108922772	+	RAB20	chr13	111176544	-
In-frame	ENST00000542136	ENST00000267328		TCGA	RV	COAD	TCGA-DM-A1D7-01A	TNFSF13B	chr13	108922772	+	RAB20	chr13	111176544	-
3UTR-3CDS	ENST00000479435	ENST00000267328		TCGA	RV	COAD	TCGA-DM-A1D7-01A	TNFSF13B	chr13	108922772	+	RAB20	chr13	111176544	-
Frame-shit	ENST00000340513	ENST00000201979		TCGA	RV	COAD	TCGA-D5-6531-01A	TPX2	chr20	30347982	+	REM1	chr20	30071962	+
Frame-shit	ENST00000300403	ENST00000201979		TCGA	RV	COAD	TCGA-D5-6531-01A	TPX2	chr20	30347982	+	REM1	chr20	30071962	+
In-frame	ENST00000220509	ENST00000394480		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
In-frame	ENST00000220509	ENST00000557856		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
In-frame	ENST00000220509	ENST00000357724		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
In-frame	ENST00000220509	ENST00000355254		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
In-frame	ENST00000220509	ENST00000360948		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
5CDS-intron	ENST00000220509	ENST00000542733		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
5CDS-intron	ENST00000220509	ENST00000558676		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
5CDS-intron	ENST00000220509	ENST00000317501		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
5CDS-intron	ENST00000220509	ENST00000558306		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
5CDS-intron	ENST00000220509	ENST00000540489		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-3CDS	ENST00000558474	ENST00000394480		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-3CDS	ENST00000558474	ENST00000557856		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-3CDS	ENST00000558474	ENST00000357724		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-3CDS	ENST00000558474	ENST00000355254		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-3CDS	ENST00000558474	ENST00000360948		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-intron	ENST00000558474	ENST00000542733		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-intron	ENST00000558474	ENST00000558676		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-intron	ENST00000558474	ENST00000317501		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-intron	ENST00000558474	ENST00000558306		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
intron-intron	ENST00000558474	ENST00000540489		TCGA	RV	COAD	TCGA-A6-2674-01A	VPS18	chr15	41193212	+	NTRK3	chr15	88423659	-
Frame-shit	ENST00000265846	ENST00000265857		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
5CDS-5UTR	ENST00000265846	ENST00000407192		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
Frame-shit	ENST00000449296	ENST00000265857		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
5CDS-5UTR	ENST00000449296	ENST00000407192		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
Frame-shit	ENST00000539900	ENST00000265857		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
5CDS-5UTR	ENST00000539900	ENST00000407192		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
5UTR-3CDS	ENST00000463358	ENST00000265857		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
5UTR-5UTR	ENST00000463358	ENST00000407192		TCGA	RV	COAD	TCGA-D5-6541-01A	ADAP1	chr7	959605	-	GET4	chr7	925693	+
Frame-shit	ENST00000566621	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
Frame-shit	ENST00000566621	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
5CDS-3UTR	ENST00000566621	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
Frame-shit	ENST00000437989	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
Frame-shit	ENST00000437989	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
5CDS-3UTR	ENST00000437989	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
Frame-shit	ENST00000569302	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
Frame-shit	ENST00000569302	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
5CDS-3UTR	ENST00000569302	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000567389	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000567389	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3UTR	ENST00000567389	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000562877	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000562877	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3UTR	ENST00000562877	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000338183	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000338183	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3UTR	ENST00000338183	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000565792	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000565792	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3UTR	ENST00000565792	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000562489	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000562489	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3UTR	ENST00000562489	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000563167	ENST00000318445		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3CDS	ENST00000563167	ENST00000424469		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
intron-3UTR	ENST00000563167	ENST00000555549		TCGA	RV	COAD	TCGA-CM-5348-01A	C15orf41	chr15	36872162	+	SLCO3A1	chr15	92663695	+
5UTR-intron	ENST00000237163	ENST00000429054		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-5UTR	ENST00000237163	ENST00000259939		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-3UTR	ENST00000237163	ENST00000486622		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-intron	ENST00000349129	ENST00000429054		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-5UTR	ENST00000349129	ENST00000259939		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-3UTR	ENST00000349129	ENST00000486622		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-intron	ENST00000536812	ENST00000429054		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-5UTR	ENST00000536812	ENST00000259939		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-3UTR	ENST00000536812	ENST00000486622		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
intron-intron	ENST00000369739	ENST00000429054		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
intron-5UTR	ENST00000369739	ENST00000259939		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
intron-3UTR	ENST00000369739	ENST00000486622		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
intron-intron	ENST00000484282	ENST00000429054		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
intron-5UTR	ENST00000484282	ENST00000259939		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
intron-3UTR	ENST00000484282	ENST00000486622		TCGA	RV	COAD	TCGA-AA-3685-01A	DOPEY1	chr6	83777498	+	RNF144B	chr6	18399730	+
5UTR-5UTR	ENST00000375114	ENST00000540582		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000375114	ENST00000374491		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000375114	ENST00000374492		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000375114	ENST00000541621		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000375114	ENST00000542871		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-5UTR	ENST00000246194	ENST00000540582		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000246194	ENST00000374491		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000246194	ENST00000374492		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000246194	ENST00000541621		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5UTR-intron	ENST00000246194	ENST00000542871		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
intron-5UTR	ENST00000493399	ENST00000540582		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
intron-intron	ENST00000493399	ENST00000374491		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
intron-intron	ENST00000493399	ENST00000374492		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
intron-intron	ENST00000493399	ENST00000541621		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
intron-intron	ENST00000493399	ENST00000542871		TCGA	RV	COAD	TCGA-A6-2675-01A	RALY	chr20	32581937	+	EDEM2	chr20	33805864	-
5CDS-intron	ENST00000344691	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000344691	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000344691	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000325074	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000325074	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000325074	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000437180	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000437180	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000437180	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000300305	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000300305	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000300305	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000399240	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000399240	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000399240	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000486278	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000486278	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000486278	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
intron-intron	ENST00000494829	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
intron-intron	ENST00000494829	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
intron-intron	ENST00000494829	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000358356	ENST00000315769		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000358356	ENST00000297737		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
5CDS-intron	ENST00000358356	ENST00000523823		TCGA	RV	COAD	TCGA-A6-A56B-01A	RUNX1	chr21	36259140	-	ZMAT4	chr8	40532450	-
intron-5UTR	ENST00000539115	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000539115	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-intron	ENST00000539115	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000379188	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000379188	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-intron	ENST00000379188	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-5UTR	ENST00000379177	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-5UTR	ENST00000379177	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-intron	ENST00000379177	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-5UTR	ENST00000304543	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-5UTR	ENST00000304543	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-intron	ENST00000304543	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000459724	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000459724	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-intron	ENST00000459724	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-5UTR	ENST00000540034	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-5UTR	ENST00000540034	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
5UTR-intron	ENST00000540034	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000338565	ENST00000287275		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-5UTR	ENST00000338565	ENST00000532258		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
intron-intron	ENST00000338565	ENST00000533636		TCGA	RV	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58607125	-
Frame-shit	ENST00000357429	ENST00000404767		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
Frame-shit	ENST00000357429	ENST00000389470		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
5CDS-intron	ENST00000357429	ENST00000493531		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
Frame-shit	ENST00000397100	ENST00000404767		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
Frame-shit	ENST00000397100	ENST00000389470		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
5CDS-intron	ENST00000397100	ENST00000493531		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
Frame-shit	ENST00000397098	ENST00000404767		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
Frame-shit	ENST00000397098	ENST00000389470		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
5CDS-intron	ENST00000397098	ENST00000493531		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
5UTR-3CDS	ENST00000488073	ENST00000404767		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
5UTR-3CDS	ENST00000488073	ENST00000389470		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
5UTR-intron	ENST00000488073	ENST00000493531		TCGA	RV	COAD	TCGA-G4-6626-01A	C7orf50	chr7	1166893	-	INTS1	chr7	1535900	-
In-frame	ENST00000433477	ENST00000296543		TCGA	RV	COAD	TCGA-AA-3495-01A	CTSO	chr4	156849488	-	NAA15	chr4	140305986	+
In-frame	ENST00000433477	ENST00000398947		TCGA	RV	COAD	TCGA-AA-3495-01A	CTSO	chr4	156849488	-	NAA15	chr4	140305986	+
5CDS-intron	ENST00000433477	ENST00000480277		TCGA	RV	COAD	TCGA-AA-3495-01A	CTSO	chr4	156849488	-	NAA15	chr4	140305986	+
5CDS-intron	ENST00000433477	ENST00000515576		TCGA	RV	COAD	TCGA-AA-3495-01A	CTSO	chr4	156849488	-	NAA15	chr4	140305986	+
5UTR-3CDS	ENST00000202028	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-3CDS	ENST00000202028	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000202028	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000202028	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000202028	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-3CDS	ENST00000373950	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-3CDS	ENST00000373950	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000373950	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000373950	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000373950	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-3CDS	ENST00000441639	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-3CDS	ENST00000441639	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000441639	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000441639	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
5UTR-intron	ENST00000441639	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000373946	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000373946	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000373946	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000373946	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000373946	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000338074	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000338074	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000338074	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000338074	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000338074	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000373941	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000373941	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000373941	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000373941	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000373941	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000479336	ENST00000548411		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-3CDS	ENST00000479336	ENST00000281474		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000479336	ENST00000551848		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000479336	ENST00000550207		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
intron-intron	ENST00000479336	ENST00000551086		TCGA	RV	COAD	TCGA-NH-A8F7-01A	EPB41L1	chr20	34700402	+	BICD1	chr12	32446928	+
In-frame	ENST00000307602	ENST00000260129		TCGA	RV	COAD	TCGA-CA-6715-01A	HOOK3	chr8	42761401	+	TGS1	chr8	56695307	+
intron-3CDS	ENST00000524839	ENST00000260129		TCGA	RV	COAD	TCGA-CA-6715-01A	HOOK3	chr8	42761401	+	TGS1	chr8	56695307	+
Frame-shit	ENST00000262134	ENST00000317089		TCGA	RV	COAD	TCGA-CM-4743-01A	LPCAT2	chr16	55543264	+	DNAJA2	chr16	46991132	-
intron-3CDS	ENST00000565056	ENST00000317089		TCGA	RV	COAD	TCGA-CM-4743-01A	LPCAT2	chr16	55543264	+	DNAJA2	chr16	46991132	-
5CDS-intron	ENST00000261267	ENST00000322776		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000261267	ENST00000532303		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000261267	ENST00000529927		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000261267	ENST00000415352		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000261267	ENST00000526169		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000549690	ENST00000322776		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000549690	ENST00000532303		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000549690	ENST00000529927		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000549690	ENST00000415352		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000549690	ENST00000526169		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000548839	ENST00000322776		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000548839	ENST00000532303		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000548839	ENST00000529927		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000548839	ENST00000415352		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000548839	ENST00000526169		TCGA	RV	COAD	TCGA-F4-6570-01A	LYZ	chr12	69748014	+	NDUFV1	chr11	67375697	+
intron-3CDS	ENST00000546115	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-5UTR	ENST00000546115	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-intron	ENST00000546115	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-3CDS	ENST00000373730	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-5UTR	ENST00000373730	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-intron	ENST00000373730	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
In-frame	ENST00000297908	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000297908	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-intron	ENST00000297908	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
In-frame	ENST00000344641	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000344641	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-intron	ENST00000344641	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
In-frame	ENST00000373723	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000373723	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-intron	ENST00000373723	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
In-frame	ENST00000373729	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000373729	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-intron	ENST00000373729	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-3CDS	ENST00000373724	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-5UTR	ENST00000373724	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
intron-intron	ENST00000373724	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
In-frame	ENST00000394315	ENST00000321582		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000394315	ENST00000474723		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5CDS-intron	ENST00000394315	ENST00000373776		TCGA	RV	COAD	TCGA-DM-A28A-01A	MRRF	chr9	125054119	+	TTLL11	chr9	124633027	-
5UTR-3CDS	ENST00000349945	ENST00000254950		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5UTR-intron	ENST00000349945	ENST00000564399		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
Frame-shit	ENST00000432919	ENST00000254950		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5CDS-intron	ENST00000432919	ENST00000564399		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
Frame-shit	ENST00000354436	ENST00000254950		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5CDS-intron	ENST00000354436	ENST00000564399		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
Frame-shit	ENST00000567239	ENST00000254950		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5CDS-intron	ENST00000567239	ENST00000564399		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5UTR-3CDS	ENST00000393742	ENST00000254950		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5UTR-intron	ENST00000393742	ENST00000564399		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5UTR-3CDS	ENST00000566899	ENST00000254950		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
5UTR-intron	ENST00000566899	ENST00000564399		TCGA	RV	COAD	TCGA-CM-5860-01A	NFAT5	chr16	69600277	+	VPS4A	chr16	69349911	+
In-frame	ENST00000341376	ENST00000483722		TCGA	RV	COAD	TCGA-DM-A1D7-01A	NFYA	chr6	41058048	+	TREML2	chr6	41162571	-
In-frame	ENST00000353205	ENST00000483722		TCGA	RV	COAD	TCGA-DM-A1D7-01A	NFYA	chr6	41058048	+	TREML2	chr6	41162571	-
5UTR-3CDS	ENST00000320201	ENST00000541529		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-3CDS	ENST00000320201	ENST00000270776		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-5UTR	ENST00000320201	ENST00000538557		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-intron	ENST00000320201	ENST00000498356		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-3CDS	ENST00000392428	ENST00000541529		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-3CDS	ENST00000392428	ENST00000270776		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-5UTR	ENST00000392428	ENST00000538557		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-intron	ENST00000392428	ENST00000498356		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-3CDS	ENST00000280562	ENST00000541529		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-3CDS	ENST00000280562	ENST00000270776		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-5UTR	ENST00000280562	ENST00000538557		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
5UTR-intron	ENST00000280562	ENST00000498356		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000542749	ENST00000541529		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000542749	ENST00000270776		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-5UTR	ENST00000542749	ENST00000538557		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-intron	ENST00000542749	ENST00000498356		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000546049	ENST00000541529		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000546049	ENST00000270776		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-5UTR	ENST00000546049	ENST00000538557		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-intron	ENST00000546049	ENST00000498356		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000451868	ENST00000541529		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000451868	ENST00000270776		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-5UTR	ENST00000451868	ENST00000538557		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
intron-intron	ENST00000451868	ENST00000498356		TCGA	RV	COAD	TCGA-A6-5664-01A	PITPNM2	chr12	123594932	-	PGD	chr1	10459686	+
In-frame	ENST00000319104	ENST00000437682		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
In-frame	ENST00000319104	ENST00000519315		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
In-frame	ENST00000319104	ENST00000379907		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5CDS-intron	ENST00000319104	ENST00000524303		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5UTR-3CDS	ENST00000319073	ENST00000437682		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5UTR-3CDS	ENST00000319073	ENST00000519315		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5UTR-3CDS	ENST00000319073	ENST00000379907		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5UTR-intron	ENST00000319073	ENST00000524303		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
Frame-shit	ENST00000534961	ENST00000437682		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
Frame-shit	ENST00000534961	ENST00000519315		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
Frame-shit	ENST00000534961	ENST00000379907		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5CDS-intron	ENST00000534961	ENST00000524303		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
In-frame	ENST00000527424	ENST00000437682		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
In-frame	ENST00000527424	ENST00000519315		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
In-frame	ENST00000527424	ENST00000379907		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
5CDS-intron	ENST00000527424	ENST00000524303		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
intron-3CDS	ENST00000526349	ENST00000437682		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
intron-3CDS	ENST00000526349	ENST00000519315		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
intron-3CDS	ENST00000526349	ENST00000379907		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
intron-intron	ENST00000526349	ENST00000524303		TCGA	RV	COAD	TCGA-CM-6166-01A	RNF170	chr8	42742871	-	ADAM32	chr8	39079129	+
In-frame	ENST00000299240	ENST00000534695		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
In-frame	ENST00000299240	ENST00000455725		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
In-frame	ENST00000299240	ENST00000531273		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000299240	ENST00000420461		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000299240	ENST00000378852		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000299240	ENST00000534600		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000299240	ENST00000529334		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
In-frame	ENST00000039989	ENST00000534695		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
In-frame	ENST00000039989	ENST00000455725		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
In-frame	ENST00000039989	ENST00000531273		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000039989	ENST00000420461		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000039989	ENST00000378852		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000039989	ENST00000534600		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-intron	ENST00000039989	ENST00000529334		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-3CDS	ENST00000526774	ENST00000534695		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-3CDS	ENST00000526774	ENST00000455725		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-3CDS	ENST00000526774	ENST00000531273		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-intron	ENST00000526774	ENST00000420461		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-intron	ENST00000526774	ENST00000378852		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-intron	ENST00000526774	ENST00000534600		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
intron-intron	ENST00000526774	ENST00000529334		TCGA	RV	COAD	TCGA-AA-A02K-01A	TTC17	chr11	43380663	+	API5	chr11	43340190	+
5CDS-5UTR	ENST00000261427	ENST00000395719		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000261427	ENST00000359707		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000261427	ENST00000357854		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-intron	ENST00000261427	ENST00000502654		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000295963	ENST00000395719		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000295963	ENST00000359707		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000295963	ENST00000357854		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
intron-intron	ENST00000295963	ENST00000502654		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
3UTR-5UTR	ENST00000438068	ENST00000395719		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
3UTR-5UTR	ENST00000438068	ENST00000359707		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
3UTR-5UTR	ENST00000438068	ENST00000357854		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
3UTR-intron	ENST00000438068	ENST00000502654		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000503368	ENST00000395719		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000503368	ENST00000359707		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000503368	ENST00000357854		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-intron	ENST00000503368	ENST00000502654		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000445950	ENST00000395719		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000445950	ENST00000359707		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000445950	ENST00000357854		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-intron	ENST00000445950	ENST00000502654		TCGA	RV	COAD	TCGA-DM-A28A-01A	UBE2K	chr4	39757359	+	G3BP2	chr4	76587233	-
5CDS-intron	ENST00000295598	ENST00000354185		TCGA	RV	COAD	TCGA-CK-4952-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000537345	ENST00000354185		TCGA	RV	COAD	TCGA-CK-4952-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000369496	ENST00000354185		TCGA	RV	COAD	TCGA-CK-4952-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
intron-intron	ENST00000491156	ENST00000354185		TCGA	RV	COAD	TCGA-CK-4952-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000317501		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000558306		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000540489		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000317501		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000558306		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000540489		TCGA	RV	COAD	TCGA-CK-5916-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5UTR-3CDS	ENST00000373871	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373871	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373871	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000436342	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000436342	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000436342	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000373864	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000373864	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000373864	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000540618	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000540618	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000540618	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000545175	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000545175	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000545175	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373863	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373863	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373863	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000471498	ENST00000393963		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000471498	ENST00000261047		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000471498	ENST00000471108		TCGA	RV	COAD	TCGA-5M-AAT6-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000446828	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000446828	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000446828	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000446828	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-3CDS	ENST00000424227	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000424227	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000424227	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000424227	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
5UTR-3CDS	ENST00000443863	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
5UTR-5UTR	ENST00000443863	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
5UTR-5UTR	ENST00000443863	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
5UTR-intron	ENST00000443863	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-3CDS	ENST00000535426	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000535426	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000535426	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000535426	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-3CDS	ENST00000265026	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000265026	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000265026	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000265026	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-3CDS	ENST00000448876	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000448876	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000448876	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000448876	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-3CDS	ENST00000454237	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000454237	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000454237	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000454237	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-3CDS	ENST00000438798	ENST00000264670		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000438798	ENST00000539938		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-5UTR	ENST00000438798	ENST00000506139		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
intron-intron	ENST00000438798	ENST00000505264		TCGA	RV	COAD	TCGA-F4-6459-01A	MAP3K13	chr3	185046750	+	NSUN2	chr5	6625782	-
In-frame	ENST00000215838	ENST00000490103		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000215838	ENST00000397871		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000215838	ENST00000397872		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000215838	ENST00000397873		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000405742	ENST00000490103		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000405742	ENST00000397871		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000405742	ENST00000397872		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000405742	ENST00000397873		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000407817	ENST00000490103		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000407817	ENST00000397871		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000407817	ENST00000397872		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
In-frame	ENST00000407817	ENST00000397873		TCGA	RV	COAD	TCGA-AD-6965-01A	TCN2	chr22	31010488	+	THOC5	chr22	29908125	-
intron-3CDS	ENST00000280772	ENST00000224784		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000280772	ENST00000458208		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-intron	ENST00000280772	ENST00000480297		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
Frame-shit	ENST00000373827	ENST00000224784		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
Frame-shit	ENST00000373827	ENST00000458208		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
5CDS-intron	ENST00000373827	ENST00000480297		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000355288	ENST00000224784		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000355288	ENST00000458208		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-intron	ENST00000355288	ENST00000480297		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000503366	ENST00000224784		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000503366	ENST00000458208		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-intron	ENST00000503366	ENST00000480297		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
5UTR-3CDS	ENST00000510382	ENST00000224784		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
5UTR-3CDS	ENST00000510382	ENST00000458208		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
5UTR-intron	ENST00000510382	ENST00000480297		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000460468	ENST00000224784		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000460468	ENST00000458208		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-intron	ENST00000460468	ENST00000480297		TCGA	RV	COAD	TCGA-D5-6536-01A	ANK3	chr10	62374944	-	ACTA2	chr10	90697999	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6650-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000361866	ENST00000513761		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000361866	ENST00000347613		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000361866	ENST00000360642		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000361866	ENST00000504131		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000361866	ENST00000506924		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000498614	ENST00000513761		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000498614	ENST00000347613		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000498614	ENST00000360642		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000498614	ENST00000504131		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000498614	ENST00000506924		TCGA	RV	COAD	TCGA-G4-6626-01A	COL6A1	chr21	47424962	+	CLCN3	chr4	170623929	+
intron-3CDS	ENST00000338675	ENST00000397510		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-3CDS	ENST00000338675	ENST00000608174		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-3CDS	ENST00000338675	ENST00000397512		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-intron	ENST00000338675	ENST00000528024		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
Frame-shit	ENST00000382409	ENST00000397510		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
Frame-shit	ENST00000382409	ENST00000608174		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
Frame-shit	ENST00000382409	ENST00000397512		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
5CDS-intron	ENST00000382409	ENST00000528024		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-3CDS	ENST00000525904	ENST00000397510		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-3CDS	ENST00000525904	ENST00000608174		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-3CDS	ENST00000525904	ENST00000397512		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
intron-intron	ENST00000525904	ENST00000528024		TCGA	RV	COAD	TCGA-D5-5538-01A	DEAF1	chr11	686858	-	TMEM80	chr11	700615	+
In-frame	ENST00000375712	ENST00000341197		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000375712	ENST00000423191		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000375712	ENST00000372999		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000375712	ENST00000358131		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-intron	ENST00000375712	ENST00000435864		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
In-frame	ENST00000418717	ENST00000341197		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000418717	ENST00000423191		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000418717	ENST00000372999		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000418717	ENST00000358131		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
5CDS-intron	ENST00000418717	ENST00000435864		TCGA	RV	COAD	TCGA-G4-6625-01A	KIF3B	chr20	30898984	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000497424	ENST00000378423		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
intron-5UTR	ENST00000497424	ENST00000353224		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
intron-5UTR	ENST00000497424	ENST00000378429		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
5CDS-5UTR	ENST00000316562	ENST00000378423		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
5CDS-5UTR	ENST00000316562	ENST00000353224		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
5CDS-5UTR	ENST00000316562	ENST00000378429		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
5CDS-5UTR	ENST00000610179	ENST00000378423		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
5CDS-5UTR	ENST00000610179	ENST00000353224		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
5CDS-5UTR	ENST00000610179	ENST00000378429		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
intron-5UTR	ENST00000464452	ENST00000378423		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
intron-5UTR	ENST00000464452	ENST00000353224		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
intron-5UTR	ENST00000464452	ENST00000378429		TCGA	RV	COAD	TCGA-DM-A1HA-01A	PANK2	chr20	3870375	+	PAK7	chr20	9624987	-
intron-5UTR	ENST00000404910	ENST00000316997		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
intron-3UTR	ENST00000404910	ENST00000444524		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
intron-5UTR	ENST00000404910	ENST00000409864		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
5CDS-5UTR	ENST00000254661	ENST00000316997		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
5CDS-3UTR	ENST00000254661	ENST00000444524		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
5CDS-5UTR	ENST00000254661	ENST00000409864		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
5UTR-5UTR	ENST00000409726	ENST00000316997		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
5UTR-3UTR	ENST00000409726	ENST00000444524		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
5UTR-5UTR	ENST00000409726	ENST00000409864		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
intron-5UTR	ENST00000403885	ENST00000316997		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
intron-3UTR	ENST00000403885	ENST00000444524		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
intron-5UTR	ENST00000403885	ENST00000409864		TCGA	RV	COAD	TCGA-NH-A5IV-01A	RAMP1	chr2	238768370	+	RBM44	chr2	238722235	+
Frame-shit	ENST00000230640	ENST00000519479		TCGA	RV	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB4	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000519479		TCGA	RV	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB4	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000519479		TCGA	RV	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB4	chr5	140874374	+
5UTR-3CDS	ENST00000462705	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000462705	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000462705	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3UTR	ENST00000462705	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000393785	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000393785	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000393785	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3UTR	ENST00000393785	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000481632	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000481632	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000481632	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3UTR	ENST00000481632	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000471418	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000471418	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000471418	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3UTR	ENST00000471418	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000357258	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000357258	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000357258	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3UTR	ENST00000357258	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000464560	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000464560	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000464560	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3UTR	ENST00000464560	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000488663	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000488663	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3CDS	ENST00000488663	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
5UTR-3UTR	ENST00000488663	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000474710	ENST00000521913		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000474710	ENST00000311151		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3CDS	ENST00000474710	ENST00000523027		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
intron-3UTR	ENST00000474710	ENST00000521983		TCGA	RV	COAD	TCGA-A6-6137-01A	ZBTB20	chr3	114412375	-	DPYSL2	chr8	26492296	+
In-frame	ENST00000423902	ENST00000361421		TCGA	RV	COAD	TCGA-4T-AA8H-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000524602	ENST00000361421		TCGA	RV	COAD	TCGA-4T-AA8H-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000525508	ENST00000361421		TCGA	RV	COAD	TCGA-4T-AA8H-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
intron-3CDS	ENST00000529472	ENST00000361421		TCGA	RV	COAD	TCGA-4T-AA8H-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
5CDS-intron	ENST00000216181	ENST00000270189		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000216181	ENST00000429089		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000216181	ENST00000220809		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000216181	ENST00000352041		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000216181	ENST00000519510		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000216181	ENST00000429710		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000216181	ENST00000524009		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000270189		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000429089		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000220809		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000352041		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000519510		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000429710		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000475726	ENST00000524009		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000270189		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000429089		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000220809		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000352041		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000519510		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000429710		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
intron-intron	ENST00000401701	ENST00000524009		TCGA	RV	COAD	TCGA-F4-6805-01A	MYH9	chr22	36677327	-	PLAT	chr8	42051245	-
5UTR-5UTR	ENST00000392350	ENST00000469972		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392350	ENST00000372047		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392350	ENST00000372050		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392350	ENST00000393160		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392350	ENST00000393157		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392350	ENST00000542690		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392350	ENST00000372062		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000469972		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000372047		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000372050		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000393160		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000393157		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000542690		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000325795	ENST00000372062		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000469972		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000372047		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000372050		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000393160		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000393157		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000542690		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
intron-5UTR	ENST00000496543	ENST00000372062		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000469972		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000372047		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000372050		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000393160		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000393157		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000542690		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000392349	ENST00000372062		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000469972		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000372047		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000372050		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000393160		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000393157		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000542690		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5UTR-5UTR	ENST00000409519	ENST00000372062		TCGA	RV	COAD	TCGA-DM-A28A-01A	ORMDL1	chr2	190648995	-	RALGDS	chr9	135979718	-
5CDS-intron	ENST00000413366	ENST00000424486		TCGA	RV	COAD	TCGA-AY-A8YK-01A	PRKCA	chr17	64492401	+	TMEM100	chr17	53805343	-
5CDS-5UTR	ENST00000413366	ENST00000575734		TCGA	RV	COAD	TCGA-AY-A8YK-01A	PRKCA	chr17	64492401	+	TMEM100	chr17	53805343	-
5CDS-intron	ENST00000413366	ENST00000570586		TCGA	RV	COAD	TCGA-AY-A8YK-01A	PRKCA	chr17	64492401	+	TMEM100	chr17	53805343	-
intron-intron	ENST00000583361	ENST00000424486		TCGA	RV	COAD	TCGA-AY-A8YK-01A	PRKCA	chr17	64492401	+	TMEM100	chr17	53805343	-
intron-5UTR	ENST00000583361	ENST00000575734		TCGA	RV	COAD	TCGA-AY-A8YK-01A	PRKCA	chr17	64492401	+	TMEM100	chr17	53805343	-
intron-intron	ENST00000583361	ENST00000570586		TCGA	RV	COAD	TCGA-AY-A8YK-01A	PRKCA	chr17	64492401	+	TMEM100	chr17	53805343	-
In-frame	ENST00000398022	ENST00000278980		TCGA	RV	COAD	TCGA-A6-2675-01A	TM9SF4	chr20	30749168	+	COMMD7	chr20	31315949	-
In-frame	ENST00000398022	ENST00000446419		TCGA	RV	COAD	TCGA-A6-2675-01A	TM9SF4	chr20	30749168	+	COMMD7	chr20	31315949	-
In-frame	ENST00000217315	ENST00000278980		TCGA	RV	COAD	TCGA-A6-2675-01A	TM9SF4	chr20	30749168	+	COMMD7	chr20	31315949	-
In-frame	ENST00000217315	ENST00000446419		TCGA	RV	COAD	TCGA-A6-2675-01A	TM9SF4	chr20	30749168	+	COMMD7	chr20	31315949	-
In-frame	ENST00000357613	ENST00000308159		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
In-frame	ENST00000357613	ENST00000569842		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000357613	ENST00000564887		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-3UTR	ENST00000357613	ENST00000569595		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000357613	ENST00000542526		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000569540	ENST00000308159		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000569540	ENST00000569842		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000569540	ENST00000564887		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000569540	ENST00000569595		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000569540	ENST00000542526		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
In-frame	ENST00000561878	ENST00000308159		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
In-frame	ENST00000561878	ENST00000569842		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000561878	ENST00000564887		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-3UTR	ENST00000561878	ENST00000569595		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000561878	ENST00000542526		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000567796	ENST00000308159		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000567796	ENST00000569842		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000567796	ENST00000564887		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000567796	ENST00000569595		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000567796	ENST00000542526		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000566980	ENST00000308159		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000566980	ENST00000569842		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000566980	ENST00000564887		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000566980	ENST00000569595		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000566980	ENST00000542526		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
In-frame	ENST00000569276	ENST00000308159		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
In-frame	ENST00000569276	ENST00000569842		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000569276	ENST00000564887		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-3UTR	ENST00000569276	ENST00000569595		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000569276	ENST00000542526		TCGA	RV	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498366	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000254799	ENST00000402918		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000254799	ENST00000435824		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000439371	ENST00000402918		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000439371	ENST00000435824		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000502323	ENST00000402918		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000502323	ENST00000435824		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000545193	ENST00000402918		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
5CDS-5UTR	ENST00000545193	ENST00000435824		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
intron-5UTR	ENST00000508091	ENST00000402918		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
intron-5UTR	ENST00000508091	ENST00000435824		TCGA	RV	COAD	TCGA-RU-A8FL-01A	GRSF1	chr4	71698024	-	ELFN2	chr22	37772036	-
Frame-shit	ENST00000281928	ENST00000283228		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000281928	ENST00000440835		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000281928	ENST00000537619		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000281928	ENST00000378778		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000281928	ENST00000342084		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000281928	ENST00000549308		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000551197	ENST00000283228		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551197	ENST00000440835		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551197	ENST00000537619		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551197	ENST00000378778		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551197	ENST00000342084		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551197	ENST00000549308		TCGA	RV	COAD	TCGA-CM-6675-01A	MED13L	chr12	116534474	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000317552	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000317552	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000453318	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000453318	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000380779	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000380779	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000380780	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000380780	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
5UTR-3CDS	ENST00000380785	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
5UTR-3CDS	ENST00000380785	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
5UTR-3CDS	ENST00000380787	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
5UTR-3CDS	ENST00000380787	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000380782	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000380782	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000479925	ENST00000276204		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000479925	ENST00000276202		TCGA	RV	COAD	TCGA-AZ-4323-01A	MID1	chrX	10851673	-	DOCK11	chrX	117796649	+
In-frame	ENST00000382172	ENST00000356711		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
In-frame	ENST00000382172	ENST00000251041		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
In-frame	ENST00000382172	ENST00000357550		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
5CDS-intron	ENST00000382172	ENST00000457511		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
5CDS-intron	ENST00000382172	ENST00000467639		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
intron-3CDS	ENST00000469167	ENST00000356711		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
intron-3CDS	ENST00000469167	ENST00000251041		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
intron-3CDS	ENST00000469167	ENST00000357550		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
intron-intron	ENST00000469167	ENST00000457511		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
intron-intron	ENST00000469167	ENST00000467639		TCGA	RV	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	MYO16	chr13	109507791	+
5CDS-intron	ENST00000309364	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000309364	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000359180	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000359180	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000317589	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000317589	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000355397	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000355397	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000429027	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000429027	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5UTR-intron	ENST00000539256	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5UTR-intron	ENST00000539256	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000299275	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000299275	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000538714	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000538714	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
intron-intron	ENST00000543806	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
intron-intron	ENST00000543806	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
intron-intron	ENST00000424268	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
intron-intron	ENST00000424268	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000540972	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-intron	ENST00000540972	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
intron-intron	ENST00000510738	ENST00000535390		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
intron-intron	ENST00000510738	ENST00000228837		TCGA	RV	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4553402	-
5CDS-5UTR	ENST00000424085	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000424085	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000424085	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000257075	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000257075	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000257075	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000373747	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000373747	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000373747	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000426105	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000426105	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000426105	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000440538	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000440538	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000440538	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000373741	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000373741	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000373741	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000423018	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000423018	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000423018	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000373742	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000373742	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-intron	ENST00000373742	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5UTR-5UTR	ENST00000490546	ENST00000377948		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5UTR-5UTR	ENST00000490546	ENST00000377939		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5UTR-intron	ENST00000490546	ENST00000483336		TCGA	RV	COAD	TCGA-D5-5537-01A	PUM1	chr1	31452909	-	RNF207	chr1	6266236	+
5CDS-5UTR	ENST00000255559	ENST00000537330		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000255559	ENST00000570891		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000255559	ENST00000306801		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000255559	ENST00000544334		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-intron	ENST00000255559	ENST00000575542		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000542342	ENST00000537330		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000542342	ENST00000570891		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000542342	ENST00000306801		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000542342	ENST00000544334		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-intron	ENST00000542342	ENST00000575542		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
intron-5UTR	ENST00000579988	ENST00000537330		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
intron-5UTR	ENST00000579988	ENST00000570891		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
intron-5UTR	ENST00000579988	ENST00000306801		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
intron-5UTR	ENST00000579988	ENST00000544334		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
intron-intron	ENST00000579988	ENST00000575542		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000579732	ENST00000537330		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000579732	ENST00000570891		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000579732	ENST00000306801		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-5UTR	ENST00000579732	ENST00000544334		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
5CDS-intron	ENST00000579732	ENST00000575542		TCGA	RV	COAD	TCGA-AY-A8YK-01A	SLC39A11	chr17	71027695	-	RPTOR	chr17	78681641	+
Frame-shit	ENST00000430627	ENST00000394303		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
Frame-shit	ENST00000430627	ENST00000394310		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
Frame-shit	ENST00000430627	ENST00000344140		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
5CDS-5UTR	ENST00000430627	ENST00000582877		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
Frame-shit	ENST00000447079	ENST00000394303		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
Frame-shit	ENST00000447079	ENST00000394310		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
Frame-shit	ENST00000447079	ENST00000344140		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
5CDS-5UTR	ENST00000447079	ENST00000582877		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
intron-3CDS	ENST00000559545	ENST00000394303		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
intron-3CDS	ENST00000559545	ENST00000394310		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
intron-3CDS	ENST00000559545	ENST00000344140		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
intron-5UTR	ENST00000559545	ENST00000582877		TCGA	RV	COAD	TCGA-AA-A02K-01A	CDK12	chr17	37646986	+	CACNB1	chr17	37347846	-
5CDS-5UTR	ENST00000378863	ENST00000473131		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-5UTR	ENST00000378863	ENST00000203001		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-intron	ENST00000378863	ENST00000453074		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-5UTR	ENST00000452938	ENST00000473131		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-5UTR	ENST00000452938	ENST00000203001		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-intron	ENST00000452938	ENST00000453074		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-5UTR	ENST00000378868	ENST00000473131		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-5UTR	ENST00000378868	ENST00000203001		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
5CDS-intron	ENST00000378868	ENST00000453074		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000464921	ENST00000473131		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000464921	ENST00000203001		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
intron-intron	ENST00000464921	ENST00000453074		TCGA	RV	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	5996136	+	TRMT6	chr20	5925560	-
Frame-shit	ENST00000307650	ENST00000280326		TCGA	RV	COAD	TCGA-A6-5667-01A	FAM195A	chr16	698474	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000307650	ENST00000503026		TCGA	RV	COAD	TCGA-A6-5667-01A	FAM195A	chr16	698474	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000307650	ENST00000515390		TCGA	RV	COAD	TCGA-A6-5667-01A	FAM195A	chr16	698474	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000307650	ENST00000515676		TCGA	RV	COAD	TCGA-A6-5667-01A	FAM195A	chr16	698474	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000307650	ENST00000506600		TCGA	RV	COAD	TCGA-A6-5667-01A	FAM195A	chr16	698474	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000361236	ENST00000260228		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
intron-intron	ENST00000361236	ENST00000544938		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
In-frame	ENST00000398136	ENST00000260228		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
5CDS-intron	ENST00000398136	ENST00000544938		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
5UTR-3CDS	ENST00000532161	ENST00000260228		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
5UTR-intron	ENST00000532161	ENST00000544938		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
5UTR-3CDS	ENST00000525577	ENST00000260228		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
5UTR-intron	ENST00000525577	ENST00000544938		TCGA	RV	COAD	TCGA-CA-5254-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102464326	-
Frame-shit	ENST00000395965	ENST00000407149		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
Frame-shit	ENST00000395965	ENST00000379551		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000395965	ENST00000505123		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000395965	ENST00000446965		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-3CDS	ENST00000505869	ENST00000407149		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-3CDS	ENST00000505869	ENST00000379551		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-5UTR	ENST00000505869	ENST00000505123		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-5UTR	ENST00000505869	ENST00000446965		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-3CDS	ENST00000509739	ENST00000407149		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-3CDS	ENST00000509739	ENST00000379551		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-5UTR	ENST00000509739	ENST00000505123		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
intron-5UTR	ENST00000509739	ENST00000446965		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
In-frame	ENST00000509163	ENST00000407149		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
In-frame	ENST00000509163	ENST00000379551		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000509163	ENST00000505123		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000509163	ENST00000446965		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5UTR-3CDS	ENST00000504768	ENST00000407149		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5UTR-3CDS	ENST00000504768	ENST00000379551		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5UTR-5UTR	ENST00000504768	ENST00000505123		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
5UTR-5UTR	ENST00000504768	ENST00000446965		TCGA	RV	COAD	TCGA-CM-4747-01A	FAM172A	chr5	93294482	-	PRR16	chr5	120021649	+
In-frame	ENST00000534894	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000534894	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000534894	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000534894	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000536810	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000536810	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000536810	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000536810	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000545257	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000545257	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000545257	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000545257	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000355995	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000355995	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000355995	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000355995	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000543371	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000543371	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000543371	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000543371	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000355717	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000355717	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000355717	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000355717	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000538897	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000538897	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000538897	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000538897	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000349937	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000349937	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000349937	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000349937	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000369397	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000369397	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000369397	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000369397	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000352065	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000352065	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000352065	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000352065	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000369395	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000369395	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
In-frame	ENST00000369395	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5CDS-intron	ENST00000369395	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5UTR-3CDS	ENST00000542695	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5UTR-3CDS	ENST00000542695	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5UTR-3CDS	ENST00000542695	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5UTR-intron	ENST00000542695	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000369389	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000369389	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000369389	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-intron	ENST00000369389	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000369386	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000369386	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000369386	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-intron	ENST00000369386	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000466338	ENST00000423902		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000466338	ENST00000524602		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-3CDS	ENST00000466338	ENST00000525508		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
intron-intron	ENST00000466338	ENST00000529472		TCGA	RV	COAD	TCGA-F4-6807-01A	TCF7L2	chr10	114799885	+	CHD7	chr8	61693559	+
5UTR-5UTR	ENST00000353703	ENST00000376062		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000353703	ENST00000376055		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000353703	ENST00000307677		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000353703	ENST00000420653		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
3UTR-5UTR	ENST00000479421	ENST00000376062		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
3UTR-5UTR	ENST00000479421	ENST00000376055		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
3UTR-5UTR	ENST00000479421	ENST00000307677		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
3UTR-5UTR	ENST00000479421	ENST00000420653		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000372839	ENST00000376062		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000372839	ENST00000376055		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000372839	ENST00000307677		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
5UTR-5UTR	ENST00000372839	ENST00000420653		TCGA	RV	COAD	TCGA-A6-2675-01A	YWHAB	chr20	43514527	+	BCL2L1	chr20	30310133	-
In-frame	ENST00000520381	ENST00000412460		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
In-frame	ENST00000520381	ENST00000262210		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
5CDS-intron	ENST00000520381	ENST00000521168		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
In-frame	ENST00000262215	ENST00000412460		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
In-frame	ENST00000262215	ENST00000262210		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
5CDS-intron	ENST00000262215	ENST00000521168		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
intron-3CDS	ENST00000517955	ENST00000412460		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
intron-3CDS	ENST00000517955	ENST00000262210		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
intron-intron	ENST00000517955	ENST00000521168		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
5UTR-3CDS	ENST00000518230	ENST00000412460		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
5UTR-3CDS	ENST00000518230	ENST00000262210		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
5UTR-intron	ENST00000518230	ENST00000521168		TCGA	RV	COAD	TCGA-RU-A8FL-01A	ARFGEF1	chr8	68150578	-	CSPP1	chr8	68024207	+
5UTR-3CDS	ENST00000382004	ENST00000375370		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000382004	ENST00000538138		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-3UTR	ENST00000382004	ENST00000465174		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000382004	ENST00000544902		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-3CDS	ENST00000358730	ENST00000375370		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000358730	ENST00000538138		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-3UTR	ENST00000358730	ENST00000465174		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000358730	ENST00000544902		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-3CDS	ENST00000302303	ENST00000375370		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000302303	ENST00000538138		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-3UTR	ENST00000302303	ENST00000465174		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000302303	ENST00000544902		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-3CDS	ENST00000381984	ENST00000375370		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000381984	ENST00000538138		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-3UTR	ENST00000381984	ENST00000465174		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000381984	ENST00000544902		TCGA	RV	COAD	TCGA-D5-6536-01A	RFX3	chr9	3525747	-	TFDP1	chr13	114265311	+
Frame-shit	ENST00000379802	ENST00000391976		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000379802	ENST00000310931		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000379802	ENST00000391975		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000379802	ENST00000427183		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
5CDS-intron	ENST00000379802	ENST00000476807		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000418664	ENST00000391976		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000418664	ENST00000310931		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000418664	ENST00000391975		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
Frame-shit	ENST00000418664	ENST00000427183		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
5CDS-intron	ENST00000418664	ENST00000476807		TCGA	RV	COAD	TCGA-DM-A0X9-01A	DSP	chr6	7575721	+	HDLBP	chr2	242170359	-
In-frame	ENST00000374864	ENST00000374820		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
5CDS-3UTR	ENST00000374864	ENST00000452740		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
5CDS-intron	ENST00000374864	ENST00000480175		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
In-frame	ENST00000535650	ENST00000374820		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
5CDS-3UTR	ENST00000535650	ENST00000452740		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
5CDS-intron	ENST00000535650	ENST00000480175		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
In-frame	ENST00000262650	ENST00000374820		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
5CDS-3UTR	ENST00000262650	ENST00000452740		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
5CDS-intron	ENST00000262650	ENST00000480175		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
intron-3CDS	ENST00000483727	ENST00000374820		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
intron-3UTR	ENST00000483727	ENST00000452740		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
intron-intron	ENST00000483727	ENST00000480175		TCGA	RV	COAD	TCGA-G4-6303-01A	ITCH	chr20	33077731	+	PIGU	chr20	33148783	-
In-frame	ENST00000354377	ENST00000339615		TCGA	RV	COAD	TCGA-QG-A5YV-01A	ZNF774	chr15	90902189	+	TTLL13	chr15	90796481	+
In-frame	ENST00000354377	ENST00000438251		TCGA	RV	COAD	TCGA-QG-A5YV-01A	ZNF774	chr15	90902189	+	TTLL13	chr15	90796481	+
3UTR-3CDS	ENST00000558115	ENST00000339615		TCGA	RV	COAD	TCGA-QG-A5YV-01A	ZNF774	chr15	90902189	+	TTLL13	chr15	90796481	+
3UTR-3CDS	ENST00000558115	ENST00000438251		TCGA	RV	COAD	TCGA-QG-A5YV-01A	ZNF774	chr15	90902189	+	TTLL13	chr15	90796481	+
In-frame	ENST00000379090	ENST00000339615		TCGA	RV	COAD	TCGA-QG-A5YV-01A	ZNF774	chr15	90902189	+	TTLL13	chr15	90796481	+
In-frame	ENST00000379090	ENST00000438251		TCGA	RV	COAD	TCGA-QG-A5YV-01A	ZNF774	chr15	90902189	+	TTLL13	chr15	90796481	+
In-frame	ENST00000256496	ENST00000351842		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
In-frame	ENST00000256496	ENST00000265560		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
5CDS-5UTR	ENST00000256496	ENST00000488520		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
5CDS-intron	ENST00000256496	ENST00000416417		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
5CDS-intron	ENST00000256496	ENST00000415188		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
In-frame	ENST00000419534	ENST00000351842		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
In-frame	ENST00000419534	ENST00000265560		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
5CDS-5UTR	ENST00000419534	ENST00000488520		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
5CDS-intron	ENST00000419534	ENST00000416417		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
5CDS-intron	ENST00000419534	ENST00000415188		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
intron-3CDS	ENST00000468010	ENST00000351842		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
intron-3CDS	ENST00000468010	ENST00000265560		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
intron-5UTR	ENST00000468010	ENST00000488520		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
intron-intron	ENST00000468010	ENST00000416417		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
intron-intron	ENST00000468010	ENST00000415188		TCGA	RV	COAD	TCGA-D5-6534-01A	ARL8B	chr3	5164273	+	USP4	chr3	49339975	-
In-frame	ENST00000398665	ENST00000255608		TCGA	RV	COAD	TCGA-AA-3511-01A	DOT1L	chr19	2223485	+	BTBD2	chr19	1997462	-
5CDS-5UTR	ENST00000398665	ENST00000590646		TCGA	RV	COAD	TCGA-AA-3511-01A	DOT1L	chr19	2223485	+	BTBD2	chr19	1997462	-
intron-3CDS	ENST00000608122	ENST00000255608		TCGA	RV	COAD	TCGA-AA-3511-01A	DOT1L	chr19	2223485	+	BTBD2	chr19	1997462	-
intron-5UTR	ENST00000608122	ENST00000590646		TCGA	RV	COAD	TCGA-AA-3511-01A	DOT1L	chr19	2223485	+	BTBD2	chr19	1997462	-
Frame-shit	ENST00000382303	ENST00000453981		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000382303	ENST00000432829		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000382303	ENST00000469391		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000382303	ENST00000382331		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000382303	ENST00000382329		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000382303	ENST00000493666		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
3UTR-3CDS	ENST00000489369	ENST00000453981		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
3UTR-3CDS	ENST00000489369	ENST00000432829		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
3UTR-3CDS	ENST00000489369	ENST00000469391		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
3UTR-intron	ENST00000489369	ENST00000382331		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
3UTR-intron	ENST00000489369	ENST00000382329		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
3UTR-intron	ENST00000489369	ENST00000493666		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000382297	ENST00000453981		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000382297	ENST00000432829		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000382297	ENST00000469391		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000382297	ENST00000382331		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000382297	ENST00000382329		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000382297	ENST00000493666		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
intron-3CDS	ENST00000382293	ENST00000453981		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
intron-3CDS	ENST00000382293	ENST00000432829		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
intron-3CDS	ENST00000382293	ENST00000469391		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
intron-intron	ENST00000382293	ENST00000382331		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
intron-intron	ENST00000382293	ENST00000382329		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
intron-intron	ENST00000382293	ENST00000493666		TCGA	RV	COAD	TCGA-CA-6716-01A	KANK1	chr9	677009	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000345136	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000345136	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000345136	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000345136	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000345136	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000357649	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000357649	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000357649	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000357649	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000357649	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354589	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354589	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354589	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354589	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354589	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000398774	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000398774	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000398774	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000398774	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000398774	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000322810	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000322810	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000322810	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000322810	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000322810	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354958	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354958	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354958	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354958	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000354958	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000356346	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000356346	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000356346	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000356346	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000356346	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000436759	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000436759	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000436759	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000436759	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000436759	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000527096	ENST00000322776		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000527096	ENST00000532303		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000527096	ENST00000529927		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000527096	ENST00000415352		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000527096	ENST00000526169		TCGA	RV	COAD	TCGA-AU-6004-01A	PLEC	chr8	144989321	-	NDUFV1	chr11	67375697	+
In-frame	ENST00000369983	ENST00000343289		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
In-frame	ENST00000369983	ENST00000404739		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
5CDS-intron	ENST00000369983	ENST00000369857		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
5CDS-intron	ENST00000369983	ENST00000423468		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
5CDS-intron	ENST00000369983	ENST00000470299		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
intron-3CDS	ENST00000476019	ENST00000343289		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
intron-3CDS	ENST00000476019	ENST00000404739		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
intron-intron	ENST00000476019	ENST00000369857		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
intron-intron	ENST00000476019	ENST00000423468		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
intron-intron	ENST00000476019	ENST00000470299		TCGA	RV	COAD	TCGA-CA-5254-01A	GBF1	chr10	104019873	+	NT5C2	chr10	104866463	-
In-frame	ENST00000535741	ENST00000409598		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000535741	ENST00000424281		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000535741	ENST00000304527		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000535741	ENST00000455740		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000535741	ENST00000409252		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000535741	ENST00000514152		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000535741	ENST00000427414		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000535741	ENST00000604030		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000409598		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000424281		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000304527		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000455740		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000409252		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000514152		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000427414		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000510413	ENST00000604030		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000409598		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000424281		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000304527		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000455740		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000409252		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000514152		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000427414		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
intron-intron	ENST00000503716	ENST00000604030		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000409598		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000424281		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000304527		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000455740		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000409252		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000514152		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
In-frame	ENST00000357115	ENST00000427414		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000357115	ENST00000604030		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000409598		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000424281		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000304527		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000455740		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000409252		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000514152		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000427414		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000507224	ENST00000604030		TCGA	RV	COAD	TCGA-CM-6170-01A	LRBA	chr4	151682935	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000380958	ENST00000241453		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
Frame-shit	ENST00000380958	ENST00000380982		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
Frame-shit	ENST00000380958	ENST00000537084		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
5CDS-intron	ENST00000380958	ENST00000469894		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
Frame-shit	ENST00000399613	ENST00000241453		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
Frame-shit	ENST00000399613	ENST00000380982		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
Frame-shit	ENST00000399613	ENST00000537084		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
5CDS-intron	ENST00000399613	ENST00000469894		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000241453		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000380982		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000537084		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-intron	ENST00000282391	ENST00000469894		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000241453		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000380982		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000537084		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
intron-intron	ENST00000483842	ENST00000469894		TCGA	RV	COAD	TCGA-AA-3712-01A	PAN3	chr13	28752072	+	FLT3	chr13	28644749	-
In-frame	ENST00000344691	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
5CDS-5UTR	ENST00000344691	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
In-frame	ENST00000325074	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
5CDS-5UTR	ENST00000325074	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
Frame-shit	ENST00000437180	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
5CDS-5UTR	ENST00000437180	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
In-frame	ENST00000300305	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
5CDS-5UTR	ENST00000300305	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-3CDS	ENST00000399240	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-5UTR	ENST00000399240	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-3CDS	ENST00000486278	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-5UTR	ENST00000486278	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-3CDS	ENST00000494829	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-5UTR	ENST00000494829	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
In-frame	ENST00000358356	ENST00000394236		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
5CDS-5UTR	ENST00000358356	ENST00000407433		TCGA	RV	COAD	TCGA-A6-6654-01A	RUNX1	chr21	36206707	-	PROS1	chr3	93646251	-
intron-intron	ENST00000371348	ENST00000371917		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371348	ENST00000493140		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371344	ENST00000371917		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371344	ENST00000493140		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000234831	ENST00000371917		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000234831	ENST00000493140		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371341	ENST00000371917		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371341	ENST00000493140		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000470395	ENST00000371917		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000470395	ENST00000493140		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371337	ENST00000371917		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371337	ENST00000493140		TCGA	RV	COAD	TCGA-G4-6315-01A	TMEM59	chr1	54497690	-	ARFGEF2	chr20	47615777	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2674-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000266754	ENST00000354725		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
5CDS-intron	ENST00000266754	ENST00000467238		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
In-frame	ENST00000547754	ENST00000354725		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
5CDS-intron	ENST00000547754	ENST00000467238		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
intron-3CDS	ENST00000547739	ENST00000354725		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
intron-intron	ENST00000547739	ENST00000467238		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
In-frame	ENST00000539410	ENST00000354725		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
5CDS-intron	ENST00000539410	ENST00000467238		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
5UTR-3CDS	ENST00000537247	ENST00000354725		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
5UTR-intron	ENST00000537247	ENST00000467238		TCGA	RV	COAD	TCGA-G4-6626-01A	GAS2L3	chr12	100995531	+	SND1	chr7	127334882	+
Frame-shit	ENST00000371795	ENST00000360289		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000371795	ENST00000448642		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000371795	ENST00000404387		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000371795	ENST00000298649		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000371795	ENST00000359426		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
5CDS-3UTR	ENST00000371795	ENST00000494253		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000416601	ENST00000360289		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000416601	ENST00000448642		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000416601	ENST00000404387		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000416601	ENST00000298649		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
Frame-shit	ENST00000416601	ENST00000359426		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
5CDS-3UTR	ENST00000416601	ENST00000494253		TCGA	RV	COAD	TCGA-CA-5254-01A	IFIT5	chr10	91174560	+	HK1	chr10	71103583	+
In-frame	ENST00000368226	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368226	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000368226	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368227	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000368227	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000532331	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000532331	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368213	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000368213	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368210	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000368210	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368215	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000368215	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000368207	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000368207	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-3CDS	ENST00000524481	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5UTR-intron	ENST00000524481	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000528282		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000530481		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000445890		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000337057		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000530757		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000392427		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000368128		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000527411		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000524581		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000525271		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000525193		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000527659		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000529208		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
In-frame	ENST00000525459	ENST00000531410		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
5CDS-intron	ENST00000525459	ENST00000530148		TCGA	RV	COAD	TCGA-CM-6164-01A	PTPRK	chr6	128841404	-	EPB41L2	chr6	131184858	-
intron-5UTR	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-5UTR	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-5UTR	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-5UTR	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-5UTR	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-5UTR	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-5UTR	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-5UTR	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-5UTR	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-5UTR	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-5UTR	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-5UTR	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2677-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32740520	+
In-frame	ENST00000155840	ENST00000506823		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
In-frame	ENST00000155840	ENST00000508122		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000155840	ENST00000457021		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000155840	ENST00000511251		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
In-frame	ENST00000335475	ENST00000506823		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
In-frame	ENST00000335475	ENST00000508122		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000335475	ENST00000457021		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000335475	ENST00000511251		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
3UTR-3CDS	ENST00000526095	ENST00000506823		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
3UTR-3CDS	ENST00000526095	ENST00000508122		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
3UTR-intron	ENST00000526095	ENST00000457021		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
3UTR-intron	ENST00000526095	ENST00000511251		TCGA	RV	COAD	TCGA-D5-5538-01A	KCNQ1	chr11	2799267	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000219022	ENST00000513761		TCGA	RV	COAD	TCGA-G4-6323-01A	OLFM4	chr13	53626192	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000219022	ENST00000347613		TCGA	RV	COAD	TCGA-G4-6323-01A	OLFM4	chr13	53626192	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000219022	ENST00000360642		TCGA	RV	COAD	TCGA-G4-6323-01A	OLFM4	chr13	53626192	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000219022	ENST00000504131		TCGA	RV	COAD	TCGA-G4-6323-01A	OLFM4	chr13	53626192	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000219022	ENST00000506924		TCGA	RV	COAD	TCGA-G4-6323-01A	OLFM4	chr13	53626192	+	CLCN3	chr4	170623929	+
3UTR-3CDS	ENST00000578868	ENST00000302538		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-3CDS	ENST00000578868	ENST00000544583		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-intron	ENST00000578868	ENST00000572441		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-intron	ENST00000578868	ENST00000574437		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-intron	ENST00000578868	ENST00000291107		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-intron	ENST00000578868	ENST00000543210		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-intron	ENST00000578868	ENST00000536794		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
3UTR-intron	ENST00000578868	ENST00000573895		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
In-frame	ENST00000321337	ENST00000302538		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
In-frame	ENST00000321337	ENST00000544583		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000321337	ENST00000572441		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000321337	ENST00000574437		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000321337	ENST00000291107		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000321337	ENST00000543210		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000321337	ENST00000536794		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000321337	ENST00000573895		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
In-frame	ENST00000429205	ENST00000302538		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
In-frame	ENST00000429205	ENST00000544583		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000429205	ENST00000572441		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000429205	ENST00000574437		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000429205	ENST00000291107		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000429205	ENST00000543210		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000429205	ENST00000536794		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
5CDS-intron	ENST00000429205	ENST00000573895		TCGA	RV	COAD	TCGA-CM-6163-01A	SENP3	chr17	7470322	+	ABR	chr17	962107	-
In-frame	ENST00000262570	ENST00000260386		TCGA	RV	COAD	TCGA-AM-5820-01A	CHCHD3	chr7	132659929	-	ITPKA	chr15	41794600	+
intron-3CDS	ENST00000448878	ENST00000260386		TCGA	RV	COAD	TCGA-AM-5820-01A	CHCHD3	chr7	132659929	-	ITPKA	chr15	41794600	+
intron-3CDS	ENST00000476546	ENST00000260386		TCGA	RV	COAD	TCGA-AM-5820-01A	CHCHD3	chr7	132659929	-	ITPKA	chr15	41794600	+
In-frame	ENST00000542753	ENST00000260386		TCGA	RV	COAD	TCGA-AM-5820-01A	CHCHD3	chr7	132659929	-	ITPKA	chr15	41794600	+
5CDS-intron	ENST00000225428	ENST00000540235		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5CDS-intron	ENST00000225428	ENST00000393930		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5CDS-intron	ENST00000225428	ENST00000393931		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5CDS-intron	ENST00000225428	ENST00000310706		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5UTR-intron	ENST00000536127	ENST00000540235		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5UTR-intron	ENST00000536127	ENST00000393930		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5UTR-intron	ENST00000536127	ENST00000393931		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5UTR-intron	ENST00000536127	ENST00000310706		TCGA	RV	COAD	TCGA-AD-6899-01A	CWC25	chr17	36981419	-	JUP	chr17	39915122	-
5UTR-3CDS	ENST00000584601	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000584601	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000584601	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-intron	ENST00000584601	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000406381	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000406381	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000406381	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-intron	ENST00000406381	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000541774	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000541774	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000541774	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000541774	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000445658	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000445658	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000445658	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000445658	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000540147	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000540147	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000540147	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000540147	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000584450	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000584450	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000584450	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000584450	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000269571	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000269571	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000269571	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000269571	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000578199	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000578199	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-3CDS	ENST00000578199	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5UTR-intron	ENST00000578199	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000540042	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000540042	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000540042	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000540042	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000584888	ENST00000457167		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000584888	ENST00000426588		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-3CDS	ENST00000584888	ENST00000316603		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
intron-intron	ENST00000584888	ENST00000589547		TCGA	RV	COAD	TCGA-D5-6531-01A	ERBB2	chr17	37844531	+	DNAJC7	chr17	40134419	-
5CDS-5UTR	ENST00000394936	ENST00000393330		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394936	ENST00000247829		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394936	ENST00000546561		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394936	ENST00000552128		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394936	ENST00000552786		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-5UTR	ENST00000394934	ENST00000393330		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394934	ENST00000247829		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394934	ENST00000546561		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394934	ENST00000552128		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000394934	ENST00000552786		TCGA	RV	COAD	TCGA-CK-4948-01B	PSAP	chr10	73576056	-	TSPAN8	chr12	71835367	-
In-frame	ENST00000393245	ENST00000325006		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000393245	ENST00000446544		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000393245	ENST00000531335		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000393245	ENST00000474594		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000393245	ENST00000446212		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000393245	ENST00000490911		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000393245	ENST00000472554		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000265388	ENST00000325006		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000265388	ENST00000446544		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000265388	ENST00000531335		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000265388	ENST00000474594		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000265388	ENST00000446212		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000265388	ENST00000490911		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000265388	ENST00000472554		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-3CDS	ENST00000482320	ENST00000325006		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-3CDS	ENST00000482320	ENST00000446544		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-3CDS	ENST00000482320	ENST00000531335		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-3CDS	ENST00000482320	ENST00000474594		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-3CDS	ENST00000482320	ENST00000446212		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-3CDS	ENST00000482320	ENST00000490911		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5UTR-intron	ENST00000482320	ENST00000472554		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471234	ENST00000325006		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471234	ENST00000446544		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471234	ENST00000531335		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471234	ENST00000474594		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471234	ENST00000446212		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471234	ENST00000490911		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000471234	ENST00000472554		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471166	ENST00000325006		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471166	ENST00000446544		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471166	ENST00000531335		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471166	ENST00000474594		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471166	ENST00000446212		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000471166	ENST00000490911		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000471166	ENST00000472554		TCGA	RV	COAD	TCGA-CM-4747-01A	TNPO3	chr7	128694705	-	AHCYL2	chr7	129019482	+
In-frame	ENST00000376542	ENST00000380737		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
In-frame	ENST00000376542	ENST00000315985		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
5CDS-3UTR	ENST00000376542	ENST00000523473		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
In-frame	ENST00000339157	ENST00000380737		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
In-frame	ENST00000339157	ENST00000315985		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
5CDS-3UTR	ENST00000339157	ENST00000523473		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
intron-3CDS	ENST00000481556	ENST00000380737		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
intron-3CDS	ENST00000481556	ENST00000315985		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
intron-3UTR	ENST00000481556	ENST00000523473		TCGA	RV	COAD	TCGA-CM-5860-01A	ABHD12	chr20	25295561	-	PPP2R2A	chr8	26196406	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-6781-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000345097	ENST00000395834		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000345097	ENST00000216378		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000345097	ENST00000356146		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
In-frame	ENST00000261302	ENST00000395834		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000261302	ENST00000216378		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000261302	ENST00000356146		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
In-frame	ENST00000557258	ENST00000395834		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000557258	ENST00000216378		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000557258	ENST00000356146		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
Frame-shit	ENST00000555353	ENST00000395834		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000555353	ENST00000216378		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
5CDS-intron	ENST00000555353	ENST00000356146		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
intron-3CDS	ENST00000555658	ENST00000395834		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
intron-intron	ENST00000555658	ENST00000216378		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
intron-intron	ENST00000555658	ENST00000356146		TCGA	RV	COAD	TCGA-A6-5667-01A	FOXN3	chr14	89878278	-	CDKL1	chr14	50796899	-
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	COAD	TCGA-CK-5915-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	COAD	TCGA-CK-5915-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
intron-3CDS	ENST00000439040	ENST00000260818		TCGA	RV	COAD	TCGA-D5-5540-01A	ATP13A3	chr3	194206523	-	DNAJC13	chr3	132219638	+
intron-intron	ENST00000439040	ENST00000486798		TCGA	RV	COAD	TCGA-D5-5540-01A	ATP13A3	chr3	194206523	-	DNAJC13	chr3	132219638	+
intron-3CDS	ENST00000256031	ENST00000260818		TCGA	RV	COAD	TCGA-D5-5540-01A	ATP13A3	chr3	194206523	-	DNAJC13	chr3	132219638	+
intron-intron	ENST00000256031	ENST00000486798		TCGA	RV	COAD	TCGA-D5-5540-01A	ATP13A3	chr3	194206523	-	DNAJC13	chr3	132219638	+
Frame-shit	ENST00000258761	ENST00000405709		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000258761	ENST00000331762		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000258761	ENST00000452895		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000258761	ENST00000415362		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000258761	ENST00000447215		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000258761	ENST00000437687		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000258761	ENST00000489381		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000258761	ENST00000450877		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000433922	ENST00000405709		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000433922	ENST00000331762		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000433922	ENST00000452895		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000433922	ENST00000415362		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000433922	ENST00000447215		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000433922	ENST00000437687		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000433922	ENST00000489381		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000433922	ENST00000450877		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-3CDS	ENST00000432311	ENST00000405709		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-3CDS	ENST00000432311	ENST00000331762		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-3CDS	ENST00000432311	ENST00000452895		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-3CDS	ENST00000432311	ENST00000415362		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-intron	ENST00000432311	ENST00000447215		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-intron	ENST00000432311	ENST00000437687		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-5UTR	ENST00000432311	ENST00000489381		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
3UTR-5UTR	ENST00000432311	ENST00000450877		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000452975	ENST00000405709		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000452975	ENST00000331762		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000452975	ENST00000452895		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000452975	ENST00000415362		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000452975	ENST00000447215		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000452975	ENST00000437687		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000452975	ENST00000489381		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000452975	ENST00000450877		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000405202	ENST00000405709		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000405202	ENST00000331762		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000405202	ENST00000452895		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000405202	ENST00000415362		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000405202	ENST00000447215		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000405202	ENST00000437687		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000405202	ENST00000489381		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000405202	ENST00000450877		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000407633	ENST00000405709		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000407633	ENST00000331762		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000407633	ENST00000452895		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000407633	ENST00000415362		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000407633	ENST00000447215		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000407633	ENST00000437687		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000407633	ENST00000489381		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000407633	ENST00000450877		TCGA	RV	COAD	TCGA-AA-3492-01A	BZW2	chr7	16722470	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000284049	ENST00000504776		TCGA	RV	COAD	TCGA-DM-A288-01A	CHD1	chr5	98215256	-	RGMB	chr5	98128789	+
5CDS-intron	ENST00000284049	ENST00000308234		TCGA	RV	COAD	TCGA-DM-A288-01A	CHD1	chr5	98215256	-	RGMB	chr5	98128789	+
5CDS-intron	ENST00000284049	ENST00000513185		TCGA	RV	COAD	TCGA-DM-A288-01A	CHD1	chr5	98215256	-	RGMB	chr5	98128789	+
intron-intron	ENST00000511067	ENST00000504776		TCGA	RV	COAD	TCGA-DM-A288-01A	CHD1	chr5	98215256	-	RGMB	chr5	98128789	+
intron-intron	ENST00000511067	ENST00000308234		TCGA	RV	COAD	TCGA-DM-A288-01A	CHD1	chr5	98215256	-	RGMB	chr5	98128789	+
intron-intron	ENST00000511067	ENST00000513185		TCGA	RV	COAD	TCGA-DM-A288-01A	CHD1	chr5	98215256	-	RGMB	chr5	98128789	+
3UTR-3CDS	ENST00000578646	ENST00000285039		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
3UTR-3CDS	ENST00000578646	ENST00000324581		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
3UTR-intron	ENST00000578646	ENST00000592688		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
3UTR-intron	ENST00000578646	ENST00000587895		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
In-frame	ENST00000261537	ENST00000285039		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
In-frame	ENST00000261537	ENST00000324581		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
5CDS-intron	ENST00000261537	ENST00000592688		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
5CDS-intron	ENST00000261537	ENST00000587895		TCGA	RV	COAD	TCGA-G4-6322-01A	MIB1	chr18	19438607	+	MYO5B	chr18	47406825	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-5659-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000317501		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000558306		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000540489		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000317501		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000558306		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000540489		TCGA	RV	COAD	TCGA-CK-5913-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5UTR-3CDS	ENST00000261681	ENST00000315266		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000261681	ENST00000478722		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000261681	ENST00000459628		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000261681	ENST00000543237		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000261681	ENST00000305960		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000555925	ENST00000315266		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000555925	ENST00000478722		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000555925	ENST00000459628		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000555925	ENST00000543237		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000555925	ENST00000305960		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
3UTR-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
3UTR-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
3UTR-3CDS	ENST00000554911	ENST00000459628		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
3UTR-3CDS	ENST00000554911	ENST00000543237		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
3UTR-3CDS	ENST00000554911	ENST00000305960		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
3UTR-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000556345	ENST00000459628		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000556345	ENST00000543237		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3CDS	ENST00000556345	ENST00000305960		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
5UTR-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	COAD	TCGA-AU-6004-01A	MPP5	chr14	67708250	+	GPHN	chr14	67525366	+
In-frame	ENST00000336665	ENST00000342016		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000336665	ENST00000362053		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000304032	ENST00000342016		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000304032	ENST00000362053		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000409538	ENST00000342016		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000409538	ENST00000362053		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000428334	ENST00000342016		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000428334	ENST00000362053		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000409457	ENST00000342016		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000409457	ENST00000362053		TCGA	RV	COAD	TCGA-AY-5543-01A	AGAP1	chr2	236715975	+	CIR1	chr2	175252507	-
In-frame	ENST00000398519	ENST00000269389		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
5CDS-intron	ENST00000398519	ENST00000580437		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
In-frame	ENST00000314028	ENST00000269389		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
5CDS-intron	ENST00000314028	ENST00000580437		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
Frame-shit	ENST00000392334	ENST00000269389		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
5CDS-intron	ENST00000392334	ENST00000580437		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
intron-3CDS	ENST00000578904	ENST00000269389		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
intron-intron	ENST00000578904	ENST00000580437		TCGA	RV	COAD	TCGA-AZ-6601-01A	CSNK1D	chr17	80223562	-	SECTM1	chr17	80280887	-
In-frame	ENST00000423902	ENST00000534894		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000536810		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000545257		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000355995		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000543371		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000355717		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000538897		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000349937		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000369397		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000352065		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000423902	ENST00000369395		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000423902	ENST00000542695		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000423902	ENST00000369389		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000423902	ENST00000369386		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000423902	ENST00000466338		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000534894		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000536810		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000545257		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000355995		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000543371		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000355717		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000538897		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000349937		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000369397		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000352065		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000524602	ENST00000369395		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000524602	ENST00000542695		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000524602	ENST00000369389		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000524602	ENST00000369386		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000524602	ENST00000466338		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000534894		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000536810		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000545257		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000355995		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000543371		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000355717		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000538897		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000349937		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000369397		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000352065		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000525508	ENST00000369395		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000525508	ENST00000542695		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000525508	ENST00000369389		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000525508	ENST00000369386		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000525508	ENST00000466338		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000534894		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000536810		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000545257		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000355995		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000543371		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000355717		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000538897		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000349937		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000369397		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000352065		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000529472	ENST00000369395		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000529472	ENST00000542695		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000529472	ENST00000369389		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000529472	ENST00000369386		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000529472	ENST00000466338		TCGA	RV	COAD	TCGA-F4-6807-01A	CHD7	chr8	61655656	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000309311	ENST00000484427		TCGA	RV	COAD	TCGA-CM-4747-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000309311	ENST00000371764		TCGA	RV	COAD	TCGA-CM-4747-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
intron-intron	ENST00000600720	ENST00000484427		TCGA	RV	COAD	TCGA-CM-4747-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
intron-intron	ENST00000600720	ENST00000371764		TCGA	RV	COAD	TCGA-CM-4747-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
In-frame	ENST00000253861	ENST00000262570		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
In-frame	ENST00000253861	ENST00000448878		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
5CDS-intron	ENST00000253861	ENST00000476546		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
5CDS-intron	ENST00000253861	ENST00000542753		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
In-frame	ENST00000539845	ENST00000262570		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
In-frame	ENST00000539845	ENST00000448878		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
5CDS-intron	ENST00000539845	ENST00000476546		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
5CDS-intron	ENST00000539845	ENST00000542753		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
In-frame	ENST00000393161	ENST00000262570		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
In-frame	ENST00000393161	ENST00000448878		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
5CDS-intron	ENST00000393161	ENST00000476546		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
5CDS-intron	ENST00000393161	ENST00000542753		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000545148	ENST00000262570		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000545148	ENST00000448878		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-intron	ENST00000545148	ENST00000476546		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-intron	ENST00000545148	ENST00000542753		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000460346	ENST00000262570		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000460346	ENST00000448878		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-intron	ENST00000460346	ENST00000476546		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-intron	ENST00000460346	ENST00000542753		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000541309	ENST00000262570		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000541309	ENST00000448878		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-intron	ENST00000541309	ENST00000476546		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-intron	ENST00000541309	ENST00000542753		TCGA	RV	COAD	TCGA-G4-6626-01A	EXOC4	chr7	133059756	+	CHCHD3	chr7	132754989	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-2684-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000356805	ENST00000441003		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
Frame-shit	ENST00000356805	ENST00000359061		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
5CDS-intron	ENST00000356805	ENST00000361558		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
5CDS-intron	ENST00000356805	ENST00000333592		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
Frame-shit	ENST00000333896	ENST00000441003		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
Frame-shit	ENST00000333896	ENST00000359061		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
5CDS-intron	ENST00000333896	ENST00000361558		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
5CDS-intron	ENST00000333896	ENST00000333592		TCGA	RV	COAD	TCGA-A6-A565-01A	SPTBN1	chr2	54856940	+	MUC2	chr11	1092080	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	COAD	TCGA-A6-3809-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000352393	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000352393	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000352393	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000352393	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000352393	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317677	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317677	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317677	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317677	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317677	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397445	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397445	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397445	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397445	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397445	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317619	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317619	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317619	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317619	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000317619	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397443	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397443	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397443	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397443	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397443	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397446	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397446	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397446	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397446	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000397446	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000397442	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000397442	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000397442	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000397442	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000397442	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000475146	ENST00000322776		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000475146	ENST00000532303		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000475146	ENST00000529927		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000475146	ENST00000415352		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000475146	ENST00000526169		TCGA	RV	COAD	TCGA-A6-6651-01A	CPNE1	chr20	34213968	-	NDUFV1	chr11	67375697	+
Frame-shit	ENST00000355502	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000355502	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000355502	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000594617	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
In-frame	ENST00000594617	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
In-frame	ENST00000594617	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000447275	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000447275	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000447275	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000262805	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000262805	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000262805	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000594465	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000594465	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000594465	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000539010	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000539010	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000539010	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000598111	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000598111	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000598111	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000597297	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000597297	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000597297	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000596647	ENST00000600328		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000596647	ENST00000600359		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
intron-3CDS	ENST00000596647	ENST00000392413		TCGA	RV	COAD	TCGA-D5-6541-01A	PDE4C	chr19	18343760	-	KIAA1683	chr19	18368916	-
Frame-shit	ENST00000437635	ENST00000339796		TCGA	RV	COAD	TCGA-D5-6530-01A	C6orf222	chr6	36293060	-	ETV7	chr6	36322464	-
5CDS-intron	ENST00000437635	ENST00000373737		TCGA	RV	COAD	TCGA-D5-6530-01A	C6orf222	chr6	36293060	-	ETV7	chr6	36322464	-
5CDS-intron	ENST00000437635	ENST00000340181		TCGA	RV	COAD	TCGA-D5-6530-01A	C6orf222	chr6	36293060	-	ETV7	chr6	36322464	-
5CDS-intron	ENST00000437635	ENST00000373738		TCGA	RV	COAD	TCGA-D5-6530-01A	C6orf222	chr6	36293060	-	ETV7	chr6	36322464	-
5CDS-intron	ENST00000437635	ENST00000538992		TCGA	RV	COAD	TCGA-D5-6530-01A	C6orf222	chr6	36293060	-	ETV7	chr6	36322464	-
5CDS-intron	ENST00000304636	ENST00000270189		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000429089		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000220809		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000352041		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000519510		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000429710		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000524009		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000270189		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000429089		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000220809		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000352041		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000519510		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000429710		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000524009		TCGA	RV	COAD	TCGA-A6-5664-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
Frame-shit	ENST00000324817	ENST00000432886		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
Frame-shit	ENST00000324817	ENST00000538295		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
Frame-shit	ENST00000324817	ENST00000544439		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
Frame-shit	ENST00000324817	ENST00000378533		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
Frame-shit	ENST00000324817	ENST00000343800		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
5CDS-5UTR	ENST00000324817	ENST00000479015		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
intron-3CDS	ENST00000496531	ENST00000432886		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
intron-3CDS	ENST00000496531	ENST00000538295		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
intron-3CDS	ENST00000496531	ENST00000544439		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
intron-3CDS	ENST00000496531	ENST00000378533		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
intron-3CDS	ENST00000496531	ENST00000343800		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
intron-5UTR	ENST00000496531	ENST00000479015		TCGA	RV	COAD	TCGA-F4-6459-01A	MED14	chrX	40547706	-	SRPX	chrX	38009147	-
In-frame	ENST00000358598	ENST00000580974		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000358598	ENST00000299954		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000358598	ENST00000335257		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000358598	ENST00000581322		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000392711	ENST00000580974		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000392711	ENST00000299954		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000392711	ENST00000335257		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000392711	ENST00000581322		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000589228	ENST00000580974		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000589228	ENST00000299954		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000589228	ENST00000335257		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000589228	ENST00000581322		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000536854	ENST00000580974		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000536854	ENST00000299954		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000536854	ENST00000335257		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000536854	ENST00000581322		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000586397	ENST00000580974		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000586397	ENST00000299954		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000586397	ENST00000335257		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000586397	ENST00000581322		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000588188	ENST00000580974		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000588188	ENST00000299954		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000588188	ENST00000335257		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000588188	ENST00000581322		TCGA	RV	COAD	TCGA-D5-6929-01A	PRKAR1A	chr17	66511717	+	PITPNC1	chr17	65528918	+
Frame-shit	ENST00000368226	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368226	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000356698		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000368317		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	COAD	TCGA-CA-5255-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-5UTR	ENST00000344710	ENST00000361682		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000344710	ENST00000403184		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000344710	ENST00000403710		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000344710	ENST00000407537		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000344710	ENST00000406520		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000344710	ENST00000449653		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000344710	ENST00000493893		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397525	ENST00000361682		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397525	ENST00000403184		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397525	ENST00000403710		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397525	ENST00000407537		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397525	ENST00000406520		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000397525	ENST00000449653		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000397525	ENST00000493893		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000330125	ENST00000361682		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000330125	ENST00000403184		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000330125	ENST00000403710		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000330125	ENST00000407537		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000330125	ENST00000406520		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000330125	ENST00000449653		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000330125	ENST00000493893		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397523	ENST00000361682		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397523	ENST00000403184		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397523	ENST00000403710		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397523	ENST00000407537		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000397523	ENST00000406520		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000397523	ENST00000449653		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
5CDS-intron	ENST00000397523	ENST00000493893		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000382180	ENST00000361682		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000382180	ENST00000403184		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000382180	ENST00000403710		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000382180	ENST00000407537		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000382180	ENST00000406520		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-intron	ENST00000382180	ENST00000449653		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-intron	ENST00000382180	ENST00000493893		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000441289	ENST00000361682		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000441289	ENST00000403184		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000441289	ENST00000403710		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000441289	ENST00000407537		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-5UTR	ENST00000441289	ENST00000406520		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-intron	ENST00000441289	ENST00000449653		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-intron	ENST00000441289	ENST00000493893		TCGA	RV	COAD	TCGA-A6-5657-01A	EIF4ENIF1	chr22	31867830	-	COMT	chr22	19948722	+
intron-intron	ENST00000373017	ENST00000371754		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000373017	ENST00000469991		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000373017	ENST00000371752		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000373017	ENST00000396105		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000470902	ENST00000371754		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000470902	ENST00000469991		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000470902	ENST00000371752		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000470902	ENST00000396105		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000540948	ENST00000371754		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000540948	ENST00000469991		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000540948	ENST00000371752		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000540948	ENST00000396105		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000277480	ENST00000371754		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000277480	ENST00000469991		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000277480	ENST00000371752		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000277480	ENST00000396105		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373013	ENST00000371754		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373013	ENST00000469991		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373013	ENST00000371752		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373013	ENST00000396105		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000372998	ENST00000371754		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000372998	ENST00000469991		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000372998	ENST00000371752		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000372998	ENST00000396105		TCGA	RV	COAD	TCGA-AA-A01P-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000373635	ENST00000409720		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
In-frame	ENST00000373635	ENST00000356853		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
5CDS-intron	ENST00000373635	ENST00000483627		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
In-frame	ENST00000308696	ENST00000409720		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
In-frame	ENST00000308696	ENST00000356853		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
5CDS-intron	ENST00000308696	ENST00000483627		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
In-frame	ENST00000409643	ENST00000409720		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
In-frame	ENST00000409643	ENST00000356853		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
5CDS-intron	ENST00000409643	ENST00000483627		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
intron-3CDS	ENST00000488354	ENST00000409720		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
intron-3CDS	ENST00000488354	ENST00000356853		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
intron-intron	ENST00000488354	ENST00000483627		TCGA	RV	COAD	TCGA-G4-6307-01A	PSMD1	chr2	232011070	+	NHEJ1	chr2	220012517	-
Frame-shit	ENST00000368226	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368226	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368226	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368226	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000368226	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368227	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368227	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368227	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368227	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000368227	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000532331	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000532331	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000532331	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000532331	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000532331	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368213	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368213	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368213	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368213	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000368213	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368210	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368210	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368210	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368210	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000368210	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368215	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368215	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368215	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368215	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000368215	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368207	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368207	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368207	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368207	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000368207	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5UTR-3CDS	ENST00000524481	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5UTR-3CDS	ENST00000524481	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5UTR-3CDS	ENST00000524481	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5UTR-3CDS	ENST00000524481	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5UTR-3UTR	ENST00000524481	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000525459	ENST00000369760		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000525459	ENST00000356489		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000525459	ENST00000320393		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000525459	ENST00000545529		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
5CDS-3UTR	ENST00000525459	ENST00000486968		TCGA	RV	COAD	TCGA-G4-6625-01A	PTPRK	chr6	128841404	-	BCKDHB	chr6	80837264	+
Frame-shit	ENST00000368226	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368226	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000356698		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000368317		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	COAD	TCGA-D5-6539-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
intron-intron	ENST00000598913	ENST00000595535		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000598913	ENST00000352632		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000598913	ENST00000344104		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000598913	ENST00000338932		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000598913	ENST00000598249		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000598913	ENST00000392025		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000598913	ENST00000392023		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-3UTR	ENST00000598913	ENST00000593816		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000595535		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000352632		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000344104		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000338932		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000598249		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000392025		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-intron	ENST00000314471	ENST00000392023		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
5UTR-3UTR	ENST00000314471	ENST00000593816		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000595535		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000352632		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000344104		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000338932		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000598249		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000392025		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000594204	ENST00000392023		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-3UTR	ENST00000594204	ENST00000593816		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000595535		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000352632		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000344104		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000338932		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000598249		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000392025		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-intron	ENST00000596368	ENST00000392023		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
intron-3UTR	ENST00000596368	ENST00000593816		TCGA	RV	COAD	TCGA-AM-5820-01A	SAMD4B	chr19	39839029	+	SPTBN4	chr19	41078244	+
Frame-shit	ENST00000379056	ENST00000216181		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
5CDS-intron	ENST00000379056	ENST00000475726		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
5CDS-intron	ENST00000379056	ENST00000401701		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-3CDS	ENST00000529421	ENST00000216181		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000529421	ENST00000475726		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000529421	ENST00000401701		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-3CDS	ENST00000530705	ENST00000216181		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000530705	ENST00000475726		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000530705	ENST00000401701		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-3CDS	ENST00000379060	ENST00000216181		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000379060	ENST00000475726		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000379060	ENST00000401701		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-3CDS	ENST00000379055	ENST00000216181		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000379055	ENST00000475726		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000379055	ENST00000401701		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-3CDS	ENST00000309246	ENST00000216181		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000309246	ENST00000475726		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
intron-intron	ENST00000309246	ENST00000401701		TCGA	RV	COAD	TCGA-DM-A285-01A	TPT1	chr13	45911008	-	MYH9	chr22	36695088	-
In-frame	ENST00000423902	ENST00000361421		TCGA	RV	COAD	TCGA-CM-6172-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000524602	ENST00000361421		TCGA	RV	COAD	TCGA-CM-6172-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000525508	ENST00000361421		TCGA	RV	COAD	TCGA-CM-6172-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
intron-3CDS	ENST00000529472	ENST00000361421		TCGA	RV	COAD	TCGA-CM-6172-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
intron-3CDS	ENST00000393330	ENST00000299767		TCGA	RV	COAD	TCGA-CK-6751-01A	TSPAN8	chr12	71518880	-	HSP90B1	chr12	104333287	+
Frame-shit	ENST00000247829	ENST00000299767		TCGA	RV	COAD	TCGA-CK-6751-01A	TSPAN8	chr12	71518880	-	HSP90B1	chr12	104333287	+
Frame-shit	ENST00000546561	ENST00000299767		TCGA	RV	COAD	TCGA-CK-6751-01A	TSPAN8	chr12	71518880	-	HSP90B1	chr12	104333287	+
intron-3CDS	ENST00000552128	ENST00000299767		TCGA	RV	COAD	TCGA-CK-6751-01A	TSPAN8	chr12	71518880	-	HSP90B1	chr12	104333287	+
intron-3CDS	ENST00000552786	ENST00000299767		TCGA	RV	COAD	TCGA-CK-6751-01A	TSPAN8	chr12	71518880	-	HSP90B1	chr12	104333287	+
intron-3CDS	ENST00000528282	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000528282	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000528282	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000528282	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000528282	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000528282	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530481	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530481	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530481	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530481	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530481	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000530481	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000445890	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000445890	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000445890	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000445890	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000445890	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000445890	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000337057	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000337057	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000337057	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000337057	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000337057	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-intron	ENST00000337057	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530757	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530757	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530757	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530757	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530757	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000530757	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000392427	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000392427	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000392427	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000392427	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-3CDS	ENST00000392427	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
5UTR-intron	ENST00000392427	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000368128	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000368128	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000368128	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000368128	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000368128	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000368128	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527411	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527411	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527411	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527411	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527411	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000527411	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000524581	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000524581	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000524581	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000524581	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000524581	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000524581	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525271	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525271	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525271	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525271	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525271	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000525271	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525193	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525193	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525193	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525193	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000525193	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000525193	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527659	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527659	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527659	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527659	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000527659	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000527659	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000529208	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000529208	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000529208	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000529208	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000529208	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000529208	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000531410	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000531410	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000531410	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000531410	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000531410	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000531410	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530148	ENST00000264657		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530148	ENST00000585517		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530148	ENST00000389272		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530148	ENST00000588969		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-3CDS	ENST00000530148	ENST00000404395		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
intron-intron	ENST00000530148	ENST00000590776		TCGA	RV	COAD	TCGA-G4-6317-02A	EPB41L2	chr6	131384295	-	STAT3	chr17	40474512	-
In-frame	ENST00000225428	ENST00000318008		TCGA	RV	COAD	TCGA-AA-A02K-01A	CWC25	chr17	36971114	-	LASP1	chr17	37074858	+
Frame-shit	ENST00000225428	ENST00000433206		TCGA	RV	COAD	TCGA-AA-A02K-01A	CWC25	chr17	36971114	-	LASP1	chr17	37074858	+
In-frame	ENST00000225428	ENST00000435347		TCGA	RV	COAD	TCGA-AA-A02K-01A	CWC25	chr17	36971114	-	LASP1	chr17	37074858	+
Frame-shit	ENST00000536127	ENST00000318008		TCGA	RV	COAD	TCGA-AA-A02K-01A	CWC25	chr17	36971114	-	LASP1	chr17	37074858	+
Frame-shit	ENST00000536127	ENST00000433206		TCGA	RV	COAD	TCGA-AA-A02K-01A	CWC25	chr17	36971114	-	LASP1	chr17	37074858	+
Frame-shit	ENST00000536127	ENST00000435347		TCGA	RV	COAD	TCGA-AA-A02K-01A	CWC25	chr17	36971114	-	LASP1	chr17	37074858	+
Frame-shit	ENST00000368226	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368226	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000356698		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000368317		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	COAD	TCGA-QG-A5YX-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000261332	ENST00000285093		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
intron-3CDS	ENST00000261332	ENST00000589432		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
intron-3CDS	ENST00000261332	ENST00000587994		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
intron-3CDS	ENST00000589881	ENST00000285093		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
intron-3CDS	ENST00000589881	ENST00000589432		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
intron-3CDS	ENST00000589881	ENST00000587994		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
5UTR-3CDS	ENST00000399061	ENST00000285093		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
5UTR-3CDS	ENST00000399061	ENST00000589432		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
5UTR-3CDS	ENST00000399061	ENST00000587994		TCGA	RV	COAD	TCGA-D5-6929-01A	ZNF24	chr18	32924334	-	ACAA2	chr18	47322251	-
intron-3CDS	ENST00000381395	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000381406	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000416167	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000300632	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000434045	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000381392	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000381389	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000418738	ENST00000280326		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000503026		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000515390		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000515676		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000506600		TCGA	RV	COAD	TCGA-G4-6314-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000408952	ENST00000344843		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5UTR-5UTR	ENST00000408952	ENST00000493287		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5UTR-intron	ENST00000408952	ENST00000482352		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000400809	ENST00000344843		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000400809	ENST00000493287		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-intron	ENST00000400809	ENST00000482352		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-3CDS	ENST00000505849	ENST00000344843		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-5UTR	ENST00000505849	ENST00000493287		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-intron	ENST00000505849	ENST00000482352		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000408918	ENST00000344843		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000408918	ENST00000493287		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-intron	ENST00000408918	ENST00000482352		TCGA	RV	COAD	TCGA-D5-6924-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000252519	ENST00000467482		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
In-frame	ENST00000252519	ENST00000380929		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
5CDS-intron	ENST00000252519	ENST00000487206		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
In-frame	ENST00000427411	ENST00000467482		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
Frame-shit	ENST00000427411	ENST00000380929		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
5CDS-intron	ENST00000427411	ENST00000487206		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
intron-3CDS	ENST00000471548	ENST00000467482		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
intron-3CDS	ENST00000471548	ENST00000380929		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
intron-intron	ENST00000471548	ENST00000487206		TCGA	RV	COAD	TCGA-AZ-6605-01A	ACE2	chrX	15596212	-	GPR143	chrX	9693880	-
Frame-shit	ENST00000264335	ENST00000421807		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-5UTR	ENST00000264335	ENST00000406424		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-5UTR	ENST00000264335	ENST00000320345		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000264335	ENST00000397335		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000264335	ENST00000542125		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-3CDS	ENST00000571732	ENST00000421807		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-5UTR	ENST00000571732	ENST00000406424		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-5UTR	ENST00000571732	ENST00000320345		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-intron	ENST00000571732	ENST00000397335		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-intron	ENST00000571732	ENST00000542125		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
Frame-shit	ENST00000573026	ENST00000421807		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-5UTR	ENST00000573026	ENST00000406424		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-5UTR	ENST00000573026	ENST00000320345		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000573026	ENST00000397335		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000573026	ENST00000542125		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
Frame-shit	ENST00000575977	ENST00000421807		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-5UTR	ENST00000575977	ENST00000406424		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-5UTR	ENST00000575977	ENST00000320345		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000575977	ENST00000397335		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000575977	ENST00000542125		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-3CDS	ENST00000498643	ENST00000421807		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-5UTR	ENST00000498643	ENST00000406424		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-5UTR	ENST00000498643	ENST00000320345		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-intron	ENST00000498643	ENST00000397335		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5UTR-intron	ENST00000498643	ENST00000542125		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	INPP5K	chr17	1417273	-
5CDS-intron	ENST00000331925	ENST00000300134		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000538913		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000543873		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000556155		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000537215		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000454075		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000300134		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000538913		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000543873		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000556155		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000537215		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000454075		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000300134		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000538913		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000543873		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000556155		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000537215		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000454075		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000300134		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000538913		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000543873		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000556155		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000537215		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000454075		TCGA	RV	COAD	TCGA-G4-6586-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000457167	ENST00000355528		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5CDS-intron	ENST00000457167	ENST00000397466		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5CDS-intron	ENST00000457167	ENST00000539345		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5CDS-intron	ENST00000457167	ENST00000576691		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-3CDS	ENST00000426588	ENST00000355528		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-intron	ENST00000426588	ENST00000397466		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-intron	ENST00000426588	ENST00000539345		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-intron	ENST00000426588	ENST00000576691		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5UTR-3CDS	ENST00000316603	ENST00000355528		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5UTR-intron	ENST00000316603	ENST00000397466		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5UTR-intron	ENST00000316603	ENST00000539345		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
5UTR-intron	ENST00000316603	ENST00000576691		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-3CDS	ENST00000589547	ENST00000355528		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-intron	ENST00000589547	ENST00000397466		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-intron	ENST00000589547	ENST00000539345		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-intron	ENST00000589547	ENST00000576691		TCGA	RV	COAD	TCGA-AA-A01Z-01A	DNAJC7	chr17	40169358	-	TBCD	chr17	80869634	+
intron-3CDS	ENST00000537645	ENST00000314391		TCGA	RV	COAD	TCGA-QG-A5YX-01A	ZNF460	chr19	57792204	+	C19orf18	chr19	58470085	-
In-frame	ENST00000360338	ENST00000314391		TCGA	RV	COAD	TCGA-QG-A5YX-01A	ZNF460	chr19	57792204	+	C19orf18	chr19	58470085	-
5UTR-3CDS	ENST00000353703	ENST00000373365		TCGA	RV	COAD	TCGA-DM-A1D7-01A	YWHAB	chr20	43514527	+	GLO1	chr6	38654750	-
5UTR-intron	ENST00000353703	ENST00000470973		TCGA	RV	COAD	TCGA-DM-A1D7-01A	YWHAB	chr20	43514527	+	GLO1	chr6	38654750	-
3UTR-3CDS	ENST00000479421	ENST00000373365		TCGA	RV	COAD	TCGA-DM-A1D7-01A	YWHAB	chr20	43514527	+	GLO1	chr6	38654750	-
3UTR-intron	ENST00000479421	ENST00000470973		TCGA	RV	COAD	TCGA-DM-A1D7-01A	YWHAB	chr20	43514527	+	GLO1	chr6	38654750	-
5UTR-3CDS	ENST00000372839	ENST00000373365		TCGA	RV	COAD	TCGA-DM-A1D7-01A	YWHAB	chr20	43514527	+	GLO1	chr6	38654750	-
5UTR-intron	ENST00000372839	ENST00000470973		TCGA	RV	COAD	TCGA-DM-A1D7-01A	YWHAB	chr20	43514527	+	GLO1	chr6	38654750	-
intron-3CDS	ENST00000541478	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000541478	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000541478	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000541478	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000541478	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
Frame-shit	ENST00000535715	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
Frame-shit	ENST00000535715	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
Frame-shit	ENST00000535715	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
Frame-shit	ENST00000535715	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
Frame-shit	ENST00000535715	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000422031	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000422031	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000422031	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000422031	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000422031	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000428192	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000428192	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000428192	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000428192	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000428192	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000538426	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000538426	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000538426	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000538426	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000538426	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543004	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543004	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543004	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543004	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543004	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000536443	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000536443	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000536443	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000536443	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000536443	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543988	ENST00000304363		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543988	ENST00000401547		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543988	ENST00000405515		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543988	ENST00000402789		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
intron-3CDS	ENST00000543988	ENST00000402185		TCGA	RV	COAD	TCGA-DM-A1D0-01A	OTUB1	chr11	63769283	+	SUV420H1	chr11	67939176	-
In-frame	ENST00000439174	ENST00000306729		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
In-frame	ENST00000439174	ENST00000306739		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
In-frame	ENST00000439174	ENST00000580534		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000439174	ENST00000581647		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000439174	ENST00000582404		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
Frame-shit	ENST00000541118	ENST00000306729		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
Frame-shit	ENST00000541118	ENST00000306739		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
Frame-shit	ENST00000541118	ENST00000580534		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000541118	ENST00000581647		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000541118	ENST00000582404		TCGA	RV	COAD	TCGA-D5-6929-01A	GNA13	chr17	63049620	-	ASPSCR1	chr17	79966913	+
In-frame	ENST00000368226	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368226	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368227	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368227	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000532331	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000532331	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368213	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368213	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368210	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368210	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368215	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368215	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368207	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368207	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000525459	ENST00000356698		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000525459	ENST00000368317		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	COAD	TCGA-DM-A1HB-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-intron	ENST00000219022	ENST00000300134		TCGA	RV	COAD	TCGA-AA-A02Y-01A	OLFM4	chr13	53626192	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000219022	ENST00000538913		TCGA	RV	COAD	TCGA-AA-A02Y-01A	OLFM4	chr13	53626192	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000219022	ENST00000543873		TCGA	RV	COAD	TCGA-AA-A02Y-01A	OLFM4	chr13	53626192	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000219022	ENST00000556155		TCGA	RV	COAD	TCGA-AA-A02Y-01A	OLFM4	chr13	53626192	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000219022	ENST00000537215		TCGA	RV	COAD	TCGA-AA-A02Y-01A	OLFM4	chr13	53626192	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000219022	ENST00000454075		TCGA	RV	COAD	TCGA-AA-A02Y-01A	OLFM4	chr13	53626192	+	STAT6	chr12	57496773	-
Frame-shit	ENST00000409304	ENST00000281828		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
In-frame	ENST00000409304	ENST00000536361		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
Frame-shit	ENST00000258405	ENST00000281828		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
In-frame	ENST00000258405	ENST00000536361		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
Frame-shit	ENST00000409840	ENST00000281828		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
In-frame	ENST00000409840	ENST00000536361		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
Frame-shit	ENST00000447280	ENST00000281828		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
In-frame	ENST00000447280	ENST00000536361		TCGA	RV	COAD	TCGA-D5-5539-01A	SERPINE2	chr2	224849469	-	FARSB	chr2	223436741	-
Frame-shit	ENST00000451813	ENST00000357156		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-3UTR	ENST00000451813	ENST00000480759		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000451813	ENST00000417166		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000451813	ENST00000300469		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000451813	ENST00000374846		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
Frame-shit	ENST00000252015	ENST00000357156		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-3UTR	ENST00000252015	ENST00000480759		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000252015	ENST00000417166		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000252015	ENST00000300469		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000252015	ENST00000374846		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
Frame-shit	ENST00000539834	ENST00000357156		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-3UTR	ENST00000539834	ENST00000480759		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000539834	ENST00000417166		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000539834	ENST00000300469		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000539834	ENST00000374846		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
Frame-shit	ENST00000432634	ENST00000357156		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-3UTR	ENST00000432634	ENST00000480759		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000432634	ENST00000417166		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000432634	ENST00000300469		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
5CDS-intron	ENST00000432634	ENST00000374846		TCGA	RV	COAD	TCGA-A6-6782-01A	TRPC4AP	chr20	33622926	-	DYNLRB1	chr20	33128385	+
Frame-shit	ENST00000264335	ENST00000313486		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
Frame-shit	ENST00000264335	ENST00000539476		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
5UTR-3CDS	ENST00000571732	ENST00000313486		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
5UTR-3CDS	ENST00000571732	ENST00000539476		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
Frame-shit	ENST00000573026	ENST00000313486		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
Frame-shit	ENST00000573026	ENST00000539476		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
Frame-shit	ENST00000575977	ENST00000313486		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
Frame-shit	ENST00000575977	ENST00000539476		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
5UTR-3CDS	ENST00000498643	ENST00000313486		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
5UTR-3CDS	ENST00000498643	ENST00000539476		TCGA	RV	COAD	TCGA-AZ-4614-01A	YWHAE	chr17	1303341	-	PITPNA	chr17	1424939	-
5CDS-3UTR	ENST00000372759	ENST00000468258		TCGA	RV	COAD	TCGA-A6-5660-01A	ZMPSTE24	chr1	40734207	+	TMCO2	chr1	40716955	+
5CDS-3UTR	ENST00000372759	ENST00000372766		TCGA	RV	COAD	TCGA-A6-5660-01A	ZMPSTE24	chr1	40734207	+	TMCO2	chr1	40716955	+
intron-3UTR	ENST00000479131	ENST00000468258		TCGA	RV	COAD	TCGA-A6-5660-01A	ZMPSTE24	chr1	40734207	+	TMCO2	chr1	40716955	+
intron-3UTR	ENST00000479131	ENST00000372766		TCGA	RV	COAD	TCGA-A6-5660-01A	ZMPSTE24	chr1	40734207	+	TMCO2	chr1	40716955	+
5CDS-intron	ENST00000261267	ENST00000354185		TCGA	RV	COAD	TCGA-G4-6299-01A	LYZ	chr12	69748014	+	DDX21	chr10	70723858	+
intron-intron	ENST00000549690	ENST00000354185		TCGA	RV	COAD	TCGA-G4-6299-01A	LYZ	chr12	69748014	+	DDX21	chr10	70723858	+
intron-intron	ENST00000548839	ENST00000354185		TCGA	RV	COAD	TCGA-G4-6299-01A	LYZ	chr12	69748014	+	DDX21	chr10	70723858	+
In-frame	ENST00000317025	ENST00000265707		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
Frame-shit	ENST00000317025	ENST00000379866		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-intron	ENST00000317025	ENST00000520772		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-intron	ENST00000317025	ENST00000541111		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-3UTR	ENST00000317025	ENST00000523755		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
In-frame	ENST00000433384	ENST00000265707		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
Frame-shit	ENST00000433384	ENST00000379866		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-intron	ENST00000433384	ENST00000520772		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-intron	ENST00000433384	ENST00000541111		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-3UTR	ENST00000433384	ENST00000523755		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
In-frame	ENST00000527502	ENST00000265707		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
Frame-shit	ENST00000527502	ENST00000379866		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-intron	ENST00000527502	ENST00000520772		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-intron	ENST00000527502	ENST00000541111		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
5CDS-3UTR	ENST00000527502	ENST00000523755		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-3CDS	ENST00000316985	ENST00000265707		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-3CDS	ENST00000316985	ENST00000379866		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-intron	ENST00000316985	ENST00000520772		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-intron	ENST00000316985	ENST00000541111		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-3UTR	ENST00000316985	ENST00000523755		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-3CDS	ENST00000525081	ENST00000265707		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-3CDS	ENST00000525081	ENST00000379866		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-intron	ENST00000525081	ENST00000520772		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-intron	ENST00000525081	ENST00000541111		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-3UTR	ENST00000525081	ENST00000523755		TCGA	RV	COAD	TCGA-D5-6926-01A	WHSC1L1	chr8	38137058	-	ADAM18	chr8	39587417	+
intron-intron	ENST00000348956	ENST00000216297		TCGA	RV	COAD	TCGA-F4-6463-01A	CKB	chr14	103986004	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000348956	ENST00000555943		TCGA	RV	COAD	TCGA-F4-6463-01A	CKB	chr14	103986004	-	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000155840	ENST00000176195		TCGA	RV	COAD	TCGA-DM-A0XF-01A	KCNQ1	chr11	2549248	+	SCT	chr11	626530	-
Frame-shit	ENST00000335475	ENST00000176195		TCGA	RV	COAD	TCGA-DM-A0XF-01A	KCNQ1	chr11	2549248	+	SCT	chr11	626530	-
intron-3CDS	ENST00000526095	ENST00000176195		TCGA	RV	COAD	TCGA-DM-A0XF-01A	KCNQ1	chr11	2549248	+	SCT	chr11	626530	-
3UTR-3CDS	ENST00000498438	ENST00000330579		TCGA	LD	COAD	TCGA-3L-AA1B-01A	HOXD11	chr2	176969354	+	NOC4L	chr12	132635526	+
3UTR-intron	ENST00000498438	ENST00000535343		TCGA	LD	COAD	TCGA-3L-AA1B-01A	HOXD11	chr2	176969354	+	NOC4L	chr12	132635526	+
3UTR-5UTR	ENST00000498438	ENST00000538784		TCGA	LD	COAD	TCGA-3L-AA1B-01A	HOXD11	chr2	176969354	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000249504	ENST00000330579		TCGA	LD	COAD	TCGA-3L-AA1B-01A	HOXD11	chr2	176969354	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000249504	ENST00000535343		TCGA	LD	COAD	TCGA-3L-AA1B-01A	HOXD11	chr2	176969354	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000249504	ENST00000538784		TCGA	LD	COAD	TCGA-3L-AA1B-01A	HOXD11	chr2	176969354	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000592179	ENST00000269228		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000592179	ENST00000412552		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000592179	ENST00000540608		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000322980	ENST00000269228		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000322980	ENST00000412552		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000322980	ENST00000540608		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000585908	ENST00000269228		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000585908	ENST00000412552		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000585908	ENST00000540608		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000284207	ENST00000269228		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000284207	ENST00000412552		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
5CDS-intron	ENST00000284207	ENST00000540608		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000586511	ENST00000269228		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000586511	ENST00000412552		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000586511	ENST00000540608		TCGA	LD	COAD	TCGA-4N-A93T-01A	ANKRD29	chr18	21209817	-	NPC1	chr18	21102870	-
intron-intron	ENST00000466084	ENST00000326047		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
intron-intron	ENST00000466084	ENST00000425755		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
5CDS-intron	ENST00000296127	ENST00000326047		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
5CDS-intron	ENST00000296127	ENST00000425755		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
5CDS-intron	ENST00000424952	ENST00000326047		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
5CDS-intron	ENST00000424952	ENST00000425755		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
5CDS-intron	ENST00000342790	ENST00000326047		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
5CDS-intron	ENST00000342790	ENST00000425755		TCGA	LD	COAD	TCGA-4T-AA8H-01A	ZDHHC3	chr3	44986660	-	KIF15	chr3	44914821	+
intron-3CDS	ENST00000368321	ENST00000322989		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-5UTR	ENST00000368321	ENST00000563390		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368321	ENST00000575669		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368321	ENST00000576436		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368321	ENST00000565420		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368321	ENST00000569083		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-3CDS	ENST00000368320	ENST00000322989		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-5UTR	ENST00000368320	ENST00000563390		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368320	ENST00000575669		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368320	ENST00000576436		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368320	ENST00000565420		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368320	ENST00000569083		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-3CDS	ENST00000368319	ENST00000322989		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-5UTR	ENST00000368319	ENST00000563390		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368319	ENST00000575669		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368319	ENST00000576436		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368319	ENST00000565420		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000368319	ENST00000569083		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-3CDS	ENST00000482337	ENST00000322989		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-5UTR	ENST00000482337	ENST00000563390		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000482337	ENST00000575669		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000482337	ENST00000576436		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000482337	ENST00000565420		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-intron	ENST00000482337	ENST00000569083		TCGA	LD	COAD	TCGA-5M-AAT4-01A	KIAA0907	chr1	155884004	-	RPS15A	chr16	18801659	-
intron-5UTR	ENST00000378863	ENST00000473131		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000378863	ENST00000203001		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-intron	ENST00000378863	ENST00000453074		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000452938	ENST00000473131		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000452938	ENST00000203001		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-intron	ENST00000452938	ENST00000453074		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000378868	ENST00000473131		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000378868	ENST00000203001		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-intron	ENST00000378868	ENST00000453074		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000464921	ENST00000473131		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-5UTR	ENST00000464921	ENST00000203001		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
intron-intron	ENST00000464921	ENST00000453074		TCGA	LD	COAD	TCGA-5M-AATA-01A	CRLS1	chr20	6004068	+	TRMT6	chr20	5925560	-
5CDS-5UTR	ENST00000242067	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000242067	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-intron	ENST00000242067	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000242067	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000242067	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-3UTR	ENST00000242067	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000355070	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000355070	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-intron	ENST00000355070	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000355070	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000355070	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-3UTR	ENST00000355070	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000350941	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000350941	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-intron	ENST00000350941	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000350941	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000350941	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-3UTR	ENST00000350941	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000354265	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000354265	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-intron	ENST00000354265	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000354265	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000354265	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-3UTR	ENST00000354265	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000396127	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000396127	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-intron	ENST00000396127	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000396127	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-5UTR	ENST00000396127	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5CDS-3UTR	ENST00000396127	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000425508	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000425508	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-intron	ENST00000425508	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000425508	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000425508	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-3UTR	ENST00000425508	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000482941	ENST00000311117		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000482941	ENST00000334914		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-intron	ENST00000482941	ENST00000257745		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000482941	ENST00000334877		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-5UTR	ENST00000482941	ENST00000476671		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
intron-3UTR	ENST00000482941	ENST00000480368		TCGA	LD	COAD	TCGA-A6-2674-01A	BBS9	chr7	33644587	+	KMT2E	chr7	104681286	+
5UTR-3CDS	ENST00000415149	ENST00000361138		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-intron	ENST00000415149	ENST00000471372		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-3CDS	ENST00000402543	ENST00000361138		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-intron	ENST00000402543	ENST00000471372		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-3CDS	ENST00000325805	ENST00000361138		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-intron	ENST00000325805	ENST00000471372		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-3CDS	ENST00000416476	ENST00000361138		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
5UTR-intron	ENST00000416476	ENST00000471372		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
intron-3CDS	ENST00000406780	ENST00000361138		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
intron-intron	ENST00000406780	ENST00000471372		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
intron-3CDS	ENST00000473542	ENST00000361138		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
intron-intron	ENST00000473542	ENST00000471372		TCGA	LD	COAD	TCGA-A6-2674-01A	BBX	chr3	107245245	+	SMC5	chr9	72959060	+
In-frame	ENST00000315691	ENST00000316549		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
5CDS-intron	ENST00000315691	ENST00000498717		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
3UTR-3CDS	ENST00000493396	ENST00000316549		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
3UTR-intron	ENST00000493396	ENST00000498717		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
intron-3CDS	ENST00000495414	ENST00000316549		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
intron-intron	ENST00000495414	ENST00000498717		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
intron-3CDS	ENST00000441925	ENST00000316549		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
intron-intron	ENST00000441925	ENST00000498717		TCGA	LD	COAD	TCGA-A6-2674-01A	C3orf58	chr3	143691831	+	SLC9A9	chr3	143515745	-
In-frame	ENST00000321341	ENST00000442544		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
In-frame	ENST00000321341	ENST00000412726		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
In-frame	ENST00000321341	ENST00000581580		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
5CDS-intron	ENST00000321341	ENST00000580146		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
intron-3CDS	ENST00000382927	ENST00000442544		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
intron-3CDS	ENST00000382927	ENST00000412726		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
intron-3CDS	ENST00000382927	ENST00000581580		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
intron-intron	ENST00000382927	ENST00000580146		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
3UTR-3CDS	ENST00000585680	ENST00000442544		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
3UTR-3CDS	ENST00000585680	ENST00000412726		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
3UTR-3CDS	ENST00000585680	ENST00000581580		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
3UTR-intron	ENST00000585680	ENST00000580146		TCGA	LD	COAD	TCGA-A6-2674-01A	ME2	chr18	48466756	+	DCC	chr18	50831948	+
5UTR-5UTR	ENST00000262244	ENST00000380003		TCGA	LD	COAD	TCGA-A6-2674-01A	MOB3B	chr9	27529553	-	C9orf72	chr9	27567162	-
5UTR-5UTR	ENST00000262244	ENST00000488117		TCGA	LD	COAD	TCGA-A6-2674-01A	MOB3B	chr9	27529553	-	C9orf72	chr9	27567162	-
5UTR-5UTR	ENST00000262244	ENST00000379997		TCGA	LD	COAD	TCGA-A6-2674-01A	MOB3B	chr9	27529553	-	C9orf72	chr9	27567162	-
intron-5UTR	ENST00000603061	ENST00000380003		TCGA	LD	COAD	TCGA-A6-2674-01A	MOB3B	chr9	27529553	-	C9orf72	chr9	27567162	-
intron-5UTR	ENST00000603061	ENST00000488117		TCGA	LD	COAD	TCGA-A6-2674-01A	MOB3B	chr9	27529553	-	C9orf72	chr9	27567162	-
intron-5UTR	ENST00000603061	ENST00000379997		TCGA	LD	COAD	TCGA-A6-2674-01A	MOB3B	chr9	27529553	-	C9orf72	chr9	27567162	-
intron-3CDS	ENST00000470422	ENST00000217381		TCGA	LD	COAD	TCGA-A6-2675-01A	RRBP1	chr20	17639241	-	SNTA1	chr20	32026832	-
Frame-shit	ENST00000246043	ENST00000217381		TCGA	LD	COAD	TCGA-A6-2675-01A	RRBP1	chr20	17639241	-	SNTA1	chr20	32026832	-
Frame-shit	ENST00000377813	ENST00000217381		TCGA	LD	COAD	TCGA-A6-2675-01A	RRBP1	chr20	17639241	-	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000377807	ENST00000217381		TCGA	LD	COAD	TCGA-A6-2675-01A	RRBP1	chr20	17639241	-	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000360807	ENST00000217381		TCGA	LD	COAD	TCGA-A6-2675-01A	RRBP1	chr20	17639241	-	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000455029	ENST00000217381		TCGA	LD	COAD	TCGA-A6-2675-01A	RRBP1	chr20	17639241	-	SNTA1	chr20	32026832	-
Frame-shit	ENST00000252032	ENST00000541428		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
Frame-shit	ENST00000252032	ENST00000379454		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000523897		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000522919		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000356457		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000518068		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000517903		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000445642		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000517847		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000522835		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000517856		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000389204		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000522603		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000379449		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000252032	ENST00000517661		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
In-frame	ENST00000453730	ENST00000541428		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
In-frame	ENST00000453730	ENST00000379454		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000523897		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000522919		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000356457		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000518068		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000517903		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000445642		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000517847		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000522835		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000517856		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000389204		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000522603		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000379449		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5CDS-intron	ENST00000453730	ENST00000517661		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-3CDS	ENST00000498079	ENST00000541428		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-3CDS	ENST00000498079	ENST00000379454		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000523897		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000522919		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000356457		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000518068		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000517903		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000445642		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000517847		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000522835		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000517856		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000389204		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000522603		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000379449		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
5UTR-intron	ENST00000498079	ENST00000517661		TCGA	LD	COAD	TCGA-A6-2677-01A	C20orf194	chr20	3285087	-	ASPH	chr8	62559437	-
In-frame	ENST00000027335	ENST00000397228		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000027335	ENST00000523887		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000027335	ENST00000276461		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000027335	ENST00000518586		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000027335	ENST00000335171		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000027335	ENST00000523107		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000027335	ENST00000519638		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000397228		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000523887		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000276461		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000518586		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000335171		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000523107		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000441892	ENST00000519638		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000397228		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000523887		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000276461		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000518586		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000335171		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000523107		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
In-frame	ENST00000450165	ENST00000519638		TCGA	LD	COAD	TCGA-A6-2677-01A	CDH17	chr8	95206863	-	ERLIN2	chr8	37597883	+
5CDS-5UTR	ENST00000305188	ENST00000544172		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-5UTR	ENST00000305188	ENST00000397501		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-5UTR	ENST00000305188	ENST00000338238		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-5UTR	ENST00000305188	ENST00000346049		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-5UTR	ENST00000305188	ENST00000420218		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-5UTR	ENST00000305188	ENST00000517339		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-intron	ENST00000305188	ENST00000519650		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
5CDS-intron	ENST00000305188	ENST00000397497		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000397418	ENST00000544172		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000397418	ENST00000397501		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000397418	ENST00000338238		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000397418	ENST00000346049		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000397418	ENST00000420218		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000397418	ENST00000517339		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-intron	ENST00000397418	ENST00000519650		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-intron	ENST00000397418	ENST00000397497		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000523910	ENST00000544172		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000523910	ENST00000397501		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000523910	ENST00000338238		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000523910	ENST00000346049		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000523910	ENST00000420218		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-5UTR	ENST00000523910	ENST00000517339		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-intron	ENST00000523910	ENST00000519650		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
intron-intron	ENST00000523910	ENST00000397497		TCGA	LD	COAD	TCGA-A6-2677-01A	ESCO2	chr8	27641574	+	PTK2B	chr8	27255065	+
Frame-shit	ENST00000349714	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000349714	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000349714	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000349714	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000349714	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000349714	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000349714	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000359226	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000359226	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000359226	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000359226	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000359226	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000359226	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-intron	ENST00000359226	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374384	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374384	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374384	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374384	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374384	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374384	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000374384	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374380	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374380	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374380	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374380	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374380	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374380	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000374380	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374385	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374385	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374385	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374385	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000374385	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374385	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000374385	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
In-frame	ENST00000374377	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
In-frame	ENST00000374377	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
In-frame	ENST00000374377	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
In-frame	ENST00000374377	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
In-frame	ENST00000374377	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000374377	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000374377	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000397556	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000397556	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000397556	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000397556	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000397556	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000397556	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000397556	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000407996	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000407996	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000407996	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000407996	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000407996	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000407996	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-intron	ENST00000407996	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000540457	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000540457	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000540457	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000540457	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000540457	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000540457	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000540457	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000542501	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000542501	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000542501	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000542501	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
Frame-shit	ENST00000542501	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-3UTR	ENST00000542501	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5CDS-intron	ENST00000542501	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000397554	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000397554	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000397554	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000397554	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000397554	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3UTR	ENST00000397554	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-intron	ENST00000397554	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3CDS	ENST00000491125	ENST00000519416		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3CDS	ENST00000491125	ENST00000520615		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3CDS	ENST00000491125	ENST00000443286		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3CDS	ENST00000491125	ENST00000520340		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3CDS	ENST00000491125	ENST00000518415		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000522752		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000348567		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000330691		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000317827		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000379931		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000276520		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-3UTR	ENST00000491125	ENST00000520973		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
5UTR-intron	ENST00000491125	ENST00000520611		TCGA	LD	COAD	TCGA-A6-2677-01A	UQCC1	chr20	33934967	-	TACC1	chr8	38682826	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	COAD	TCGA-A6-2686-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
In-frame	ENST00000568000	ENST00000402384		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
In-frame	ENST00000568000	ENST00000406470		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
In-frame	ENST00000568000	ENST00000265577		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
In-frame	ENST00000568000	ENST00000396675		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
In-frame	ENST00000568000	ENST00000401396		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
In-frame	ENST00000568000	ENST00000422063		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
5CDS-intron	ENST00000568000	ENST00000407906		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
5CDS-intron	ENST00000568000	ENST00000476942		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000561540	ENST00000402384		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000561540	ENST00000406470		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000561540	ENST00000265577		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000561540	ENST00000396675		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000561540	ENST00000401396		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000561540	ENST00000422063		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-intron	ENST00000561540	ENST00000407906		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-intron	ENST00000561540	ENST00000476942		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000568721	ENST00000402384		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000568721	ENST00000406470		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000568721	ENST00000265577		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000568721	ENST00000396675		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000568721	ENST00000401396		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-3CDS	ENST00000568721	ENST00000422063		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-intron	ENST00000568721	ENST00000407906		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
intron-intron	ENST00000568721	ENST00000476942		TCGA	LD	COAD	TCGA-A6-3809-01A	KCTD13	chr16	29934511	-	ICA1	chr7	8183602	-
In-frame	ENST00000424970	ENST00000373232		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5CDS-intron	ENST00000424970	ENST00000608321		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5CDS-intron	ENST00000424970	ENST00000495346		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
Frame-shit	ENST00000394833	ENST00000373232		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5CDS-intron	ENST00000394833	ENST00000608321		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5CDS-intron	ENST00000394833	ENST00000495346		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
Frame-shit	ENST00000356736	ENST00000373232		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5CDS-intron	ENST00000356736	ENST00000608321		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5CDS-intron	ENST00000356736	ENST00000495346		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5UTR-3CDS	ENST00000510255	ENST00000373232		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5UTR-intron	ENST00000510255	ENST00000608321		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
5UTR-intron	ENST00000510255	ENST00000495346		TCGA	LD	COAD	TCGA-A6-3809-01A	SLC39A8	chr4	103228593	-	PPA1	chr10	71969441	-
intron-5UTR	ENST00000379261	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000379261	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000379261	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000379261	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000379261	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000379261	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000416382	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000416382	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000416382	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000416382	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000416382	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000450189	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000450189	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000450189	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000450189	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000450189	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000542579	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000542579	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000542579	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000542579	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000542579	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000399850	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000399850	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000399850	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000399850	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000399850	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000417956	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000417956	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000417956	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000417956	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000417956	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354440	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354440	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354440	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354440	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354440	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000427450	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000427450	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000427450	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000427450	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000427450	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000315874	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000315874	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000315874	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000315874	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000315874	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000608830	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000608830	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000608830	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000608830	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000608830	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000609692	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000609692	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000609692	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000609692	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000609692	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000354897	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354897	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354897	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354897	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000354897	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000381602		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000397962		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000309776		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000509513		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000397959		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000381591		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000403354		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000381607		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000402736		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000602682		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000381604		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000537122	ENST00000381584		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000537122	ENST00000558098		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000537122	ENST00000545619		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000537122	ENST00000535374		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
intron-intron	ENST00000537122	ENST00000473115		TCGA	LD	COAD	TCGA-A6-3810-01A	CELF2	chr10	11060126	+	ZMYND11	chr10	225934	+
5CDS-3UTR	ENST00000261609	ENST00000262461		TCGA	LD	COAD	TCGA-A6-5656-01A	HERC2	chr15	28525214	-	SLC12A2	chr5	127524635	+
5CDS-intron	ENST00000261609	ENST00000343225		TCGA	LD	COAD	TCGA-A6-5656-01A	HERC2	chr15	28525214	-	SLC12A2	chr5	127524635	+
5CDS-intron	ENST00000261609	ENST00000507791		TCGA	LD	COAD	TCGA-A6-5656-01A	HERC2	chr15	28525214	-	SLC12A2	chr5	127524635	+
intron-3UTR	ENST00000563945	ENST00000262461		TCGA	LD	COAD	TCGA-A6-5656-01A	HERC2	chr15	28525214	-	SLC12A2	chr5	127524635	+
intron-intron	ENST00000563945	ENST00000343225		TCGA	LD	COAD	TCGA-A6-5656-01A	HERC2	chr15	28525214	-	SLC12A2	chr5	127524635	+
intron-intron	ENST00000563945	ENST00000507791		TCGA	LD	COAD	TCGA-A6-5656-01A	HERC2	chr15	28525214	-	SLC12A2	chr5	127524635	+
In-frame	ENST00000305877	ENST00000263207		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000305877	ENST00000344269		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000305877	ENST00000406522		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000305877	ENST00000401994		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000305877	ENST00000406259		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
5CDS-5UTR	ENST00000305877	ENST00000487793		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000359540	ENST00000263207		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000359540	ENST00000344269		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000359540	ENST00000406522		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000359540	ENST00000401994		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
In-frame	ENST00000359540	ENST00000406259		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
5CDS-5UTR	ENST00000359540	ENST00000487793		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000398512	ENST00000263207		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000398512	ENST00000344269		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000398512	ENST00000406522		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000398512	ENST00000401994		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000398512	ENST00000406259		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-5UTR	ENST00000398512	ENST00000487793		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000436990	ENST00000263207		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000436990	ENST00000344269		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000436990	ENST00000406522		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000436990	ENST00000401994		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-3CDS	ENST00000436990	ENST00000406259		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-5UTR	ENST00000436990	ENST00000487793		TCGA	LD	COAD	TCGA-A6-5657-01A	BCR	chr22	23615961	+	ARVCF	chr22	19969614	-
intron-5UTR	ENST00000406486	ENST00000382565		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000382578		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000382566		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000348295		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000544772		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000404276		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000328354		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000405598		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000382580		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000402731		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000406486	ENST00000403642		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-intron	ENST00000406486	ENST00000464581		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000382565		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000382578		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000382566		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000348295		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000544772		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000404276		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000328354		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000405598		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000382580		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000402731		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000358431	ENST00000403642		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-intron	ENST00000358431	ENST00000464581		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000382565		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000382578		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000382566		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000348295		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000544772		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000404276		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000328354		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000405598		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000382580		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000402731		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-5UTR	ENST00000401395	ENST00000403642		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
intron-intron	ENST00000401395	ENST00000464581		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25508429	+	CHEK2	chr22	29130715	-
In-frame	ENST00000406486	ENST00000354336		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25425507	+	CRKL	chr22	21303999	+
In-frame	ENST00000358431	ENST00000354336		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25425507	+	CRKL	chr22	21303999	+
intron-3CDS	ENST00000401395	ENST00000354336		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25425507	+	CRKL	chr22	21303999	+
5UTR-intron	ENST00000406486	ENST00000344710		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
5UTR-intron	ENST00000406486	ENST00000397525		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
5UTR-intron	ENST00000406486	ENST00000330125		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
5UTR-intron	ENST00000406486	ENST00000397523		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
5UTR-intron	ENST00000406486	ENST00000382180		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
5UTR-5UTR	ENST00000406486	ENST00000441289		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000358431	ENST00000344710		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000358431	ENST00000397525		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000358431	ENST00000330125		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000358431	ENST00000397523		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000358431	ENST00000382180		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-5UTR	ENST00000358431	ENST00000441289		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000401395	ENST00000344710		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000401395	ENST00000397525		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000401395	ENST00000330125		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000401395	ENST00000397523		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-intron	ENST00000401395	ENST00000382180		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
intron-5UTR	ENST00000401395	ENST00000441289		TCGA	LD	COAD	TCGA-A6-5657-01A	KIAA1671	chr22	25410533	+	EIF4ENIF1	chr22	31833804	-
In-frame	ENST00000318217	ENST00000395346		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
In-frame	ENST00000318217	ENST00000308360		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
5CDS-5UTR	ENST00000318217	ENST00000543734		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
5CDS-intron	ENST00000318217	ENST00000465444		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-3CDS	ENST00000394649	ENST00000395346		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-3CDS	ENST00000394649	ENST00000308360		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-5UTR	ENST00000394649	ENST00000543734		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-intron	ENST00000394649	ENST00000465444		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
In-frame	ENST00000579584	ENST00000395346		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
In-frame	ENST00000579584	ENST00000308360		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
5CDS-5UTR	ENST00000579584	ENST00000543734		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
5CDS-intron	ENST00000579584	ENST00000465444		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-3CDS	ENST00000584232	ENST00000395346		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-3CDS	ENST00000584232	ENST00000308360		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-5UTR	ENST00000584232	ENST00000543734		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-intron	ENST00000584232	ENST00000465444		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
In-frame	ENST00000583621	ENST00000395346		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
In-frame	ENST00000583621	ENST00000308360		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
5CDS-5UTR	ENST00000583621	ENST00000543734		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
5CDS-intron	ENST00000583621	ENST00000465444		TCGA	LD	COAD	TCGA-A6-5657-01A	MYO1D	chr17	31203796	-	PIGS	chr17	26897981	-
intron-5UTR	ENST00000382151	ENST00000425759		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000382151	ENST00000292733		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000382151	ENST00000542773		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000382151	ENST00000263205		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000382151	ENST00000406969		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000382151	ENST00000382974		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000382151	ENST00000541476		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-intron	ENST00000382151	ENST00000478831		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000425759		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000292733		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000542773		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000263205		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000406969		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000382974		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000266095	ENST00000541476		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-intron	ENST00000266095	ENST00000478831		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000425759		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000292733		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000542773		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000263205		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000406969		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000382974		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000397500	ENST00000541476		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
5UTR-intron	ENST00000397500	ENST00000478831		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000425759		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000292733		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000542773		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000263205		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000406969		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000382974		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000336566	ENST00000541476		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-intron	ENST00000336566	ENST00000478831		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000425759		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000292733		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000542773		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000263205		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000406969		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000382974		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000439502	ENST00000541476		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-intron	ENST00000439502	ENST00000478831		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000425759		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000292733		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000542773		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000263205		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000406969		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000382974		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-5UTR	ENST00000478893	ENST00000541476		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
intron-intron	ENST00000478893	ENST00000478831		TCGA	LD	COAD	TCGA-A6-5657-01A	PISD	chr22	32026790	-	MED15	chr22	20891404	+
Frame-shit	ENST00000215730	ENST00000443326		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
Frame-shit	ENST00000215730	ENST00000414585		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
Frame-shit	ENST00000215730	ENST00000540643		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
Frame-shit	ENST00000215730	ENST00000432498		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
Frame-shit	ENST00000215730	ENST00000443011		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
Frame-shit	ENST00000215730	ENST00000400289		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
Frame-shit	ENST00000215730	ENST00000400288		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
5CDS-3UTR	ENST00000215730	ENST00000474741		TCGA	LD	COAD	TCGA-A6-5657-01A	SNAP29	chr22	21224821	+	SFI1	chr22	32012731	+
intron-intron	ENST00000433608	ENST00000431639		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-5UTR	ENST00000433608	ENST00000316024		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000433608	ENST00000457584		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000433608	ENST00000396463		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000433608	ENST00000534050		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000393382	ENST00000431639		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-5UTR	ENST00000393382	ENST00000316024		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000393382	ENST00000457584		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000393382	ENST00000396463		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000393382	ENST00000534050		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000470462	ENST00000431639		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-5UTR	ENST00000470462	ENST00000316024		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000470462	ENST00000457584		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000470462	ENST00000396463		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
intron-intron	ENST00000470462	ENST00000534050		TCGA	LD	COAD	TCGA-A6-5657-01A	TTLL6	chr17	46893201	-	WRAP53	chr17	7590695	+
In-frame	ENST00000300896	ENST00000576629		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
In-frame	ENST00000300896	ENST00000333412		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
intron-3CDS	ENST00000592339	ENST00000576629		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
intron-3CDS	ENST00000592339	ENST00000333412		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
In-frame	ENST00000393003	ENST00000576629		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
In-frame	ENST00000393003	ENST00000333412		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
intron-3CDS	ENST00000586881	ENST00000576629		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
intron-3CDS	ENST00000586881	ENST00000333412		TCGA	LD	COAD	TCGA-A6-5657-01A	USP32	chr17	58372044	-	LRRC37A2	chr17	44630766	+
In-frame	ENST00000311117	ENST00000353024		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000311117	ENST00000392712		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000311117	ENST00000368849		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000311117	ENST00000368848		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000311117	ENST00000538902		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334914	ENST00000353024		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334914	ENST00000392712		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334914	ENST00000368849		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334914	ENST00000368848		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334914	ENST00000538902		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000257745	ENST00000353024		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000257745	ENST00000392712		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000257745	ENST00000368849		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000257745	ENST00000368848		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000257745	ENST00000538902		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334877	ENST00000353024		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334877	ENST00000392712		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334877	ENST00000368849		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334877	ENST00000368848		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
In-frame	ENST00000334877	ENST00000538902		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000476671	ENST00000353024		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000476671	ENST00000392712		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000476671	ENST00000368849		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000476671	ENST00000368848		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000476671	ENST00000538902		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000480368	ENST00000353024		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000480368	ENST00000392712		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000480368	ENST00000368849		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000480368	ENST00000368848		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000480368	ENST00000538902		TCGA	LD	COAD	TCGA-A6-5660-01A	KMT2E	chr7	104748372	+	TUFT1	chr1	151542133	+
intron-3CDS	ENST00000492698	ENST00000244061		TCGA	LD	COAD	TCGA-A6-5660-01A	LAMA5	chr20	60937456	-	RNF114	chr20	48558098	+
Frame-shit	ENST00000252999	ENST00000244061		TCGA	LD	COAD	TCGA-A6-5660-01A	LAMA5	chr20	60937456	-	RNF114	chr20	48558098	+
Frame-shit	ENST00000370692	ENST00000244061		TCGA	LD	COAD	TCGA-A6-5660-01A	LAMA5	chr20	60937456	-	RNF114	chr20	48558098	+
Frame-shit	ENST00000370677	ENST00000244061		TCGA	LD	COAD	TCGA-A6-5660-01A	LAMA5	chr20	60937456	-	RNF114	chr20	48558098	+
3UTR-3CDS	ENST00000375114	ENST00000328041		TCGA	LD	COAD	TCGA-A6-5660-01A	RALY	chr20	32666359	+	SLC24A3	chr20	19698172	+
3UTR-3CDS	ENST00000246194	ENST00000328041		TCGA	LD	COAD	TCGA-A6-5660-01A	RALY	chr20	32666359	+	SLC24A3	chr20	19698172	+
intron-3CDS	ENST00000493399	ENST00000328041		TCGA	LD	COAD	TCGA-A6-5660-01A	RALY	chr20	32666359	+	SLC24A3	chr20	19698172	+
In-frame	ENST00000353024	ENST00000311117		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000353024	ENST00000334914		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000353024	ENST00000257745		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000353024	ENST00000334877		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000353024	ENST00000476671		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000353024	ENST00000480368		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000392712	ENST00000311117		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000392712	ENST00000334914		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000392712	ENST00000257745		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000392712	ENST00000334877		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000392712	ENST00000476671		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000392712	ENST00000480368		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368849	ENST00000311117		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368849	ENST00000334914		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368849	ENST00000257745		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368849	ENST00000334877		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000368849	ENST00000476671		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000368849	ENST00000480368		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368848	ENST00000311117		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368848	ENST00000334914		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368848	ENST00000257745		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000368848	ENST00000334877		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000368848	ENST00000476671		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000368848	ENST00000480368		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000538902	ENST00000311117		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000538902	ENST00000334914		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000538902	ENST00000257745		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
In-frame	ENST00000538902	ENST00000334877		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000538902	ENST00000476671		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5CDS-intron	ENST00000538902	ENST00000480368		TCGA	LD	COAD	TCGA-A6-5660-01A	TUFT1	chr1	151538704	+	KMT2E	chr7	104749389	+
5UTR-3CDS	ENST00000428443	ENST00000420890		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
5UTR-intron	ENST00000428443	ENST00000480419		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
5UTR-intron	ENST00000428443	ENST00000409284		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
5UTR-intron	ENST00000428443	ENST00000295723		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
intron-3CDS	ENST00000486468	ENST00000420890		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
intron-intron	ENST00000486468	ENST00000480419		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
intron-intron	ENST00000486468	ENST00000409284		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
intron-intron	ENST00000486468	ENST00000295723		TCGA	LD	COAD	TCGA-A6-5661-01A	SESTD1	chr2	180129226	-	CCDC141	chr2	179826210	-
Frame-shit	ENST00000005260	ENST00000394702		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
Frame-shit	ENST00000005260	ENST00000331242		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
Frame-shit	ENST00000005260	ENST00000413276		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
Frame-shit	ENST00000005260	ENST00000411766		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5CDS-5UTR	ENST00000005260	ENST00000432937		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5CDS-5UTR	ENST00000005260	ENST00000394703		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5CDS-intron	ENST00000005260	ENST00000580710		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5CDS-5UTR	ENST00000005260	ENST00000414194		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-3CDS	ENST00000462558	ENST00000394702		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-3CDS	ENST00000462558	ENST00000331242		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-3CDS	ENST00000462558	ENST00000413276		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-3CDS	ENST00000462558	ENST00000411766		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-5UTR	ENST00000462558	ENST00000432937		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-5UTR	ENST00000462558	ENST00000394703		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-intron	ENST00000462558	ENST00000580710		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-5UTR	ENST00000462558	ENST00000414194		TCGA	LD	COAD	TCGA-A6-5667-01A	BAIAP2L1	chr7	98030114	-	DMTF1	chr7	86800311	+
5UTR-intron	ENST00000373448	ENST00000400522		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
5UTR-intron	ENST00000373448	ENST00000524882		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
5UTR-intron	ENST00000373447	ENST00000400522		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
5UTR-intron	ENST00000373447	ENST00000524882		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
intron-intron	ENST00000449821	ENST00000400522		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
intron-intron	ENST00000449821	ENST00000524882		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
intron-intron	ENST00000487362	ENST00000400522		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
intron-intron	ENST00000487362	ENST00000524882		TCGA	LD	COAD	TCGA-A6-5667-01A	TTI1	chr20	36661806	-	EFCAB8	chr20	31546227	+
Frame-shit	ENST00000538132	ENST00000260379		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5CDS-intron	ENST00000538132	ENST00000357790		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5CDS-intron	ENST00000538132	ENST00000560274		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
In-frame	ENST00000217426	ENST00000260379		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5CDS-intron	ENST00000217426	ENST00000357790		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5CDS-intron	ENST00000217426	ENST00000560274		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5UTR-3CDS	ENST00000468908	ENST00000260379		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5UTR-intron	ENST00000468908	ENST00000357790		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5UTR-intron	ENST00000468908	ENST00000560274		TCGA	LD	COAD	TCGA-A6-6648-01A	AHCY	chr20	32883201	-	RPLP1	chr15	69745986	+
5CDS-intron	ENST00000284049	ENST00000504776		TCGA	LD	COAD	TCGA-A6-6648-01A	CHD1	chr5	98204199	-	RGMB	chr5	98128789	+
5CDS-intron	ENST00000284049	ENST00000308234		TCGA	LD	COAD	TCGA-A6-6648-01A	CHD1	chr5	98204199	-	RGMB	chr5	98128789	+
5CDS-intron	ENST00000284049	ENST00000513185		TCGA	LD	COAD	TCGA-A6-6648-01A	CHD1	chr5	98204199	-	RGMB	chr5	98128789	+
5UTR-intron	ENST00000511067	ENST00000504776		TCGA	LD	COAD	TCGA-A6-6648-01A	CHD1	chr5	98204199	-	RGMB	chr5	98128789	+
5UTR-intron	ENST00000511067	ENST00000308234		TCGA	LD	COAD	TCGA-A6-6648-01A	CHD1	chr5	98204199	-	RGMB	chr5	98128789	+
5UTR-intron	ENST00000511067	ENST00000513185		TCGA	LD	COAD	TCGA-A6-6648-01A	CHD1	chr5	98204199	-	RGMB	chr5	98128789	+
In-frame	ENST00000434600	ENST00000276201		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000434600	ENST00000345865		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
5CDS-intron	ENST00000434600	ENST00000478840		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000538785	ENST00000276201		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000538785	ENST00000345865		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
5CDS-intron	ENST00000538785	ENST00000478840		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000200639	ENST00000276201		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000200639	ENST00000345865		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
5CDS-intron	ENST00000200639	ENST00000478840		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000371335	ENST00000276201		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000371335	ENST00000345865		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
5CDS-intron	ENST00000371335	ENST00000478840		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
intron-3CDS	ENST00000540603	ENST00000276201		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
intron-3CDS	ENST00000540603	ENST00000345865		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
intron-intron	ENST00000540603	ENST00000478840		TCGA	LD	COAD	TCGA-A6-6650-01A	LAMP2	chrX	119602961	-	UPF3B	chrX	118985836	-
In-frame	ENST00000357654	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000357654	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000357654	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000351666	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000351666	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000351666	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000309486	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000309486	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000309486	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000346315	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000346315	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000346315	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000354071	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000354071	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000354071	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000352993	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000352993	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000352993	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000468300	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000468300	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000468300	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000591534	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000591534	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000591534	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000591849	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000591849	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000591849	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000586385	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000586385	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000586385	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000493795	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
Frame-shit	ENST00000493795	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000493795	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000471181	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000471181	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000471181	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000491747	ENST00000309428		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
In-frame	ENST00000491747	ENST00000585894		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000491747	ENST00000543197		TCGA	LD	COAD	TCGA-A6-6652-01A	BRCA1	chr17	41199660	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000396373	ENST00000326765		TCGA	LD	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12965195	+
5CDS-intron	ENST00000396373	ENST00000356591		TCGA	LD	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12965195	+
3UTR-intron	ENST00000544715	ENST00000326765		TCGA	LD	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12965195	+
3UTR-intron	ENST00000544715	ENST00000356591		TCGA	LD	COAD	TCGA-A6-6653-01A	ETV6	chr12	11803094	+	APOLD1	chr12	12965195	+
5CDS-intron	ENST00000428135	ENST00000403050		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000428135	ENST00000445996		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000428135	ENST00000469407		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000409389	ENST00000403050		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000409389	ENST00000445996		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000409389	ENST00000469407		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000409604	ENST00000403050		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000409604	ENST00000445996		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000409604	ENST00000469407		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
intron-intron	ENST00000496855	ENST00000403050		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
intron-intron	ENST00000496855	ENST00000445996		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
intron-3UTR	ENST00000496855	ENST00000469407		TCGA	LD	COAD	TCGA-A6-6653-01A	SNX13	chr7	17979907	-	PHF14	chr7	11150977	+
5CDS-5UTR	ENST00000334528	ENST00000341807		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000334528	ENST00000303045		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000334528	ENST00000435777		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000561249	ENST00000341807		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000561249	ENST00000303045		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000561249	ENST00000435777		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000559047	ENST00000341807		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000559047	ENST00000303045		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
5CDS-5UTR	ENST00000559047	ENST00000435777		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000558197	ENST00000341807		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000558197	ENST00000303045		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000558197	ENST00000435777		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000559150	ENST00000341807		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000559150	ENST00000303045		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000559150	ENST00000435777		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000320930	ENST00000341807		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000320930	ENST00000303045		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
intron-5UTR	ENST00000320930	ENST00000435777		TCGA	LD	COAD	TCGA-A6-6782-01A	FMN1	chr15	33256308	-	COL22A1	chr8	139672723	-
In-frame	ENST00000263401	ENST00000529230		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000263401	ENST00000415402		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000263401	ENST00000312055		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000263401	ENST00000354558		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
5CDS-intron	ENST00000263401	ENST00000532321		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000452374	ENST00000529230		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000452374	ENST00000415402		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000452374	ENST00000312055		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000452374	ENST00000354558		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
5CDS-intron	ENST00000452374	ENST00000532321		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000532705	ENST00000529230		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000532705	ENST00000415402		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000532705	ENST00000312055		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000532705	ENST00000354558		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
5CDS-intron	ENST00000532705	ENST00000532321		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
intron-3CDS	ENST00000533308	ENST00000529230		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
intron-3CDS	ENST00000533308	ENST00000415402		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
intron-3CDS	ENST00000533308	ENST00000312055		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
intron-3CDS	ENST00000533308	ENST00000354558		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
intron-intron	ENST00000533308	ENST00000532321		TCGA	LD	COAD	TCGA-A6-A56B-01A	COMMD9	chr11	36310912	-	CKAP5	chr11	46812133	-
In-frame	ENST00000525364	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000525364	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000525364	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
In-frame	ENST00000270176	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000270176	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000270176	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
In-frame	ENST00000420247	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000420247	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000420247	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
In-frame	ENST00000533862	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000533862	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000533862	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
In-frame	ENST00000279270	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000279270	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000279270	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
In-frame	ENST00000524944	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000524944	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000524944	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
In-frame	ENST00000527009	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000527009	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000527009	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
intron-3CDS	ENST00000534462	ENST00000320580		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
intron-intron	ENST00000534462	ENST00000529757		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
intron-intron	ENST00000534462	ENST00000524815		TCGA	LD	COAD	TCGA-A6-A56B-01A	SCYL1	chr11	65300276	+	PACS1	chr11	65977833	+
intron-3CDS	ENST00000255608	ENST00000398665		TCGA	LD	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2013546	-	DOT1L	chr19	2226182	+
intron-intron	ENST00000255608	ENST00000608122		TCGA	LD	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2013546	-	DOT1L	chr19	2226182	+
intron-3CDS	ENST00000590646	ENST00000398665		TCGA	LD	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2013546	-	DOT1L	chr19	2226182	+
intron-intron	ENST00000590646	ENST00000608122		TCGA	LD	COAD	TCGA-AA-3511-01A	BTBD2	chr19	2013546	-	DOT1L	chr19	2226182	+
In-frame	ENST00000216962	ENST00000373973		TCGA	LD	COAD	TCGA-AA-3660-01A	PYGB	chr20	25273249	+	CNBD2	chr20	34575317	+
In-frame	ENST00000216962	ENST00000349339		TCGA	LD	COAD	TCGA-AA-3660-01A	PYGB	chr20	25273249	+	CNBD2	chr20	34575317	+
In-frame	ENST00000216962	ENST00000538900		TCGA	LD	COAD	TCGA-AA-3660-01A	PYGB	chr20	25273249	+	CNBD2	chr20	34575317	+
intron-3CDS	ENST00000471359	ENST00000373973		TCGA	LD	COAD	TCGA-AA-3660-01A	PYGB	chr20	25273249	+	CNBD2	chr20	34575317	+
intron-3CDS	ENST00000471359	ENST00000349339		TCGA	LD	COAD	TCGA-AA-3660-01A	PYGB	chr20	25273249	+	CNBD2	chr20	34575317	+
intron-3CDS	ENST00000471359	ENST00000538900		TCGA	LD	COAD	TCGA-AA-3660-01A	PYGB	chr20	25273249	+	CNBD2	chr20	34575317	+
Frame-shit	ENST00000331302	ENST00000380183		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000331302	ENST00000572022		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000331302	ENST00000380173		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000331302	ENST00000573359		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000323434	ENST00000380183		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000323434	ENST00000572022		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000323434	ENST00000380173		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000323434	ENST00000573359		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000536489	ENST00000380183		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000536489	ENST00000572022		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000536489	ENST00000380173		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000536489	ENST00000573359		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
5UTR-3CDS	ENST00000576001	ENST00000380183		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
5UTR-3CDS	ENST00000576001	ENST00000572022		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
5UTR-3CDS	ENST00000576001	ENST00000380173		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
5UTR-3CDS	ENST00000576001	ENST00000573359		TCGA	LD	COAD	TCGA-AA-3662-01A	RPH3AL	chr17	169211	-	ALOX15B	chr17	7942704	+
Frame-shit	ENST00000297423	ENST00000445593		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000297423	ENST00000521545		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000518074	ENST00000445593		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000518074	ENST00000521545		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000541342	ENST00000445593		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000541342	ENST00000521545		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
3UTR-3CDS	ENST00000521214	ENST00000445593		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
3UTR-3CDS	ENST00000521214	ENST00000521545		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000517693	ENST00000445593		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000517693	ENST00000521545		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518060	ENST00000445593		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518060	ENST00000521545		TCGA	LD	COAD	TCGA-AA-3662-01A	SPIDR	chr8	48511758	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000267890	ENST00000263805		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000267890	ENST00000565380		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000267890	ENST00000565611		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
5CDS-intron	ENST00000267890	ENST00000565660		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000567840	ENST00000263805		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000567840	ENST00000565380		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000567840	ENST00000565611		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
5CDS-intron	ENST00000567840	ENST00000565660		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000567274	ENST00000263805		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000567274	ENST00000565380		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000567274	ENST00000565611		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
5CDS-intron	ENST00000567274	ENST00000565660		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
intron-3CDS	ENST00000567485	ENST00000263805		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
intron-3CDS	ENST00000567485	ENST00000565380		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
intron-3CDS	ENST00000567485	ENST00000565611		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
intron-intron	ENST00000567485	ENST00000565660		TCGA	LD	COAD	TCGA-AA-3697-01A	TTBK2	chr15	43132558	-	ZNF106	chr15	42710149	-
Frame-shit	ENST00000282344	ENST00000400324		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
Frame-shit	ENST00000282344	ENST00000400330		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
Frame-shit	ENST00000282344	ENST00000400319		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
Frame-shit	ENST00000282344	ENST00000400320		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
Frame-shit	ENST00000282344	ENST00000377908		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
Frame-shit	ENST00000282344	ENST00000267215		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
5CDS-intron	ENST00000282344	ENST00000465066		TCGA	LD	COAD	TCGA-AA-3697-01A	USP12	chr13	27664020	-	DIAPH3	chr13	60616954	-
intron-3UTR	ENST00000338675	ENST00000397594		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
intron-3UTR	ENST00000338675	ENST00000397596		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
intron-3UTR	ENST00000338675	ENST00000451590		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
intron-3UTR	ENST00000338675	ENST00000417302		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
intron-3UTR	ENST00000338675	ENST00000311189		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
intron-intron	ENST00000338675	ENST00000468682		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5CDS-3UTR	ENST00000382409	ENST00000397594		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5CDS-3UTR	ENST00000382409	ENST00000397596		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5CDS-3UTR	ENST00000382409	ENST00000451590		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5CDS-3UTR	ENST00000382409	ENST00000417302		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5CDS-3UTR	ENST00000382409	ENST00000311189		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5CDS-intron	ENST00000382409	ENST00000468682		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5UTR-3UTR	ENST00000525904	ENST00000397594		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5UTR-3UTR	ENST00000525904	ENST00000397596		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5UTR-3UTR	ENST00000525904	ENST00000451590		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5UTR-3UTR	ENST00000525904	ENST00000417302		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5UTR-3UTR	ENST00000525904	ENST00000311189		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
5UTR-intron	ENST00000525904	ENST00000468682		TCGA	LD	COAD	TCGA-AD-6888-01A	DEAF1	chr11	680963	-	HRAS	chr11	532755	-
Frame-shit	ENST00000369043	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
In-frame	ENST00000535655	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
Frame-shit	ENST00000224652	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
Frame-shit	ENST00000369040	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
Frame-shit	ENST00000540606	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
In-frame	ENST00000543447	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
intron-3CDS	ENST00000481784	ENST00000359299		TCGA	LD	COAD	TCGA-AD-6899-01A	ATE1	chr10	123596233	-	ANXA10	chr4	169060637	+
5CDS-intron	ENST00000519389	ENST00000423889		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000519389	ENST00000338957		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000374727	ENST00000423889		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000374727	ENST00000338957		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000336279	ENST00000423889		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000336279	ENST00000338957		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000441993	ENST00000423889		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000441993	ENST00000338957		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000419594	ENST00000423889		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000419594	ENST00000338957		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000343002	ENST00000423889		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
5CDS-intron	ENST00000343002	ENST00000338957		TCGA	LD	COAD	TCGA-AD-6899-01A	HEPH	chrX	65428088	+	ZC3H12B	chrX	64708526	+
3UTR-3UTR	ENST00000518421	ENST00000270189		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000518421	ENST00000429089		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000518421	ENST00000220809		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000518421	ENST00000352041		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000518421	ENST00000519510		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000518421	ENST00000429710		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000518421	ENST00000524009		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000270189		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000429089		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000220809		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000352041		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000519510		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000429710		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000174653	ENST00000524009		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000270189		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000429089		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000220809		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000352041		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000519510		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000429710		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
3UTR-3UTR	ENST00000396926	ENST00000524009		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000270189		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000429089		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000220809		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000352041		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000519510		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000429710		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000520685	ENST00000524009		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000270189		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000429089		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000220809		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000352041		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000519510		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000429710		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
intron-3UTR	ENST00000517922	ENST00000524009		TCGA	LD	COAD	TCGA-AD-6901-01A	AP3M2	chr8	42027577	+	PLAT	chr8	42033669	-
5CDS-intron	ENST00000319670	ENST00000373511		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000373498		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000350766		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000373503		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000394063		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000265960		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000373497		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000319670	ENST00000394060		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-5UTR	ENST00000319670	ENST00000483937		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000373511		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000373498		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000350766		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000373503		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000394063		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000265960		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000373497		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-intron	ENST00000359920	ENST00000394060		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
5CDS-5UTR	ENST00000359920	ENST00000483937		TCGA	LD	COAD	TCGA-AD-6901-01A	ARHGEF18	chr19	7506938	+	MAPKAP1	chr9	128233694	-
In-frame	ENST00000432306	ENST00000534894		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000536810		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000545257		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000355995		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000543371		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000355717		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000538897		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000349937		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000369397		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000352065		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000369395		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000432306	ENST00000542695		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369389		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369386		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000466338		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000534894		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000536810		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000545257		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000355995		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000543371		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000355717		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000538897		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000349937		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000369397		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000352065		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000369395		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000393077	ENST00000542695		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369389		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369386		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000466338		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000534894		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000536810		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000545257		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355995		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000543371		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355717		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000538897		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000349937		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369397		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000352065		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369395		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000483122	ENST00000542695		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369389		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369386		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000466338		TCGA	LD	COAD	TCGA-AD-6963-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000380243	ENST00000331768		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
5CDS-5UTR	ENST00000380243	ENST00000329331		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
5CDS-5UTR	ENST00000380243	ENST00000436070		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
5CDS-5UTR	ENST00000380243	ENST00000453938		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000557769	ENST00000331768		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000557769	ENST00000329331		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000557769	ENST00000436070		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000557769	ENST00000453938		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000555822	ENST00000331768		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000555822	ENST00000329331		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000555822	ENST00000436070		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
intron-5UTR	ENST00000555822	ENST00000453938		TCGA	LD	COAD	TCGA-AD-6964-01A	CCDC85C	chr14	100069504	-	SETD3	chr14	99932150	-
In-frame	ENST00000432306	ENST00000534894		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000536810		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000545257		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000355995		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000543371		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000355717		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000538897		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000349937		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000369397		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000352065		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000369395		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000432306	ENST00000542695		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369389		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369386		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000466338		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000534894		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000536810		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000545257		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000355995		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000543371		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000355717		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000538897		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000349937		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000369397		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000352065		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000369395		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000393077	ENST00000542695		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369389		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369386		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000466338		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000534894		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000536810		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000545257		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355995		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000543371		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355717		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000538897		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000349937		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369397		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000352065		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369395		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000483122	ENST00000542695		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369389		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369386		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000466338		TCGA	LD	COAD	TCGA-AD-6965-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
3UTR-3CDS	ENST00000551025	ENST00000262903		TCGA	LD	COAD	TCGA-AD-A5EJ-01A	CASP8AP2	chr6	90566918	+	HACE1	chr6	105178291	-
3UTR-3CDS	ENST00000551025	ENST00000369125		TCGA	LD	COAD	TCGA-AD-A5EJ-01A	CASP8AP2	chr6	90566918	+	HACE1	chr6	105178291	-
3UTR-5UTR	ENST00000551025	ENST00000517995		TCGA	LD	COAD	TCGA-AD-A5EJ-01A	CASP8AP2	chr6	90566918	+	HACE1	chr6	105178291	-
intron-3CDS	ENST00000493368	ENST00000336755		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
intron-5UTR	ENST00000493368	ENST00000534928		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
intron-3UTR	ENST00000493368	ENST00000461038		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
intron-intron	ENST00000493368	ENST00000322831		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
In-frame	ENST00000318158	ENST00000336755		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000318158	ENST00000534928		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000318158	ENST00000461038		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000318158	ENST00000322831		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
In-frame	ENST00000607784	ENST00000336755		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
5CDS-5UTR	ENST00000607784	ENST00000534928		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
5CDS-3UTR	ENST00000607784	ENST00000461038		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
5CDS-intron	ENST00000607784	ENST00000322831		TCGA	LD	COAD	TCGA-AD-A5EK-01A	GRHPR	chr9	37432135	+	ZCCHC7	chr9	37302185	+
In-frame	ENST00000357485	ENST00000377075		TCGA	LD	COAD	TCGA-AM-5820-01A	ARID5A	chr2	97202567	+	CNNM4	chr2	97462749	+
5CDS-5UTR	ENST00000357485	ENST00000540067		TCGA	LD	COAD	TCGA-AM-5820-01A	ARID5A	chr2	97202567	+	CNNM4	chr2	97462749	+
5CDS-3UTR	ENST00000357485	ENST00000496186		TCGA	LD	COAD	TCGA-AM-5820-01A	ARID5A	chr2	97202567	+	CNNM4	chr2	97462749	+
intron-3CDS	ENST00000454558	ENST00000377075		TCGA	LD	COAD	TCGA-AM-5820-01A	ARID5A	chr2	97202567	+	CNNM4	chr2	97462749	+
intron-5UTR	ENST00000454558	ENST00000540067		TCGA	LD	COAD	TCGA-AM-5820-01A	ARID5A	chr2	97202567	+	CNNM4	chr2	97462749	+
intron-3UTR	ENST00000454558	ENST00000496186		TCGA	LD	COAD	TCGA-AM-5820-01A	ARID5A	chr2	97202567	+	CNNM4	chr2	97462749	+
Frame-shit	ENST00000609104	ENST00000375500		TCGA	LD	COAD	TCGA-AM-5820-01A	USP6NL	chr10	11639630	-	LYZL1	chr10	29580772	+
intron-3CDS	ENST00000277575	ENST00000375500		TCGA	LD	COAD	TCGA-AM-5820-01A	USP6NL	chr10	11639630	-	LYZL1	chr10	29580772	+
intron-3CDS	ENST00000379237	ENST00000375500		TCGA	LD	COAD	TCGA-AM-5820-01A	USP6NL	chr10	11639630	-	LYZL1	chr10	29580772	+
intron-3CDS	ENST00000443016	ENST00000375500		TCGA	LD	COAD	TCGA-AM-5820-01A	USP6NL	chr10	11639630	-	LYZL1	chr10	29580772	+
intron-3CDS	ENST00000609853	ENST00000375500		TCGA	LD	COAD	TCGA-AM-5820-01A	USP6NL	chr10	11639630	-	LYZL1	chr10	29580772	+
In-frame	ENST00000302692	ENST00000278359		TCGA	LD	COAD	TCGA-AY-5543-01A	SLC25A33	chr1	9613863	+	APIP	chr11	34905051	-
In-frame	ENST00000302692	ENST00000395787		TCGA	LD	COAD	TCGA-AY-5543-01A	SLC25A33	chr1	9613863	+	APIP	chr11	34905051	-
5CDS-5UTR	ENST00000302692	ENST00000527830		TCGA	LD	COAD	TCGA-AY-5543-01A	SLC25A33	chr1	9613863	+	APIP	chr11	34905051	-
intron-3CDS	ENST00000421184	ENST00000263346		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000563406		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000263347		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000393092	ENST00000263346		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000563406		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000263347		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000261615	ENST00000263346		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000563406		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000263347		TCGA	LD	COAD	TCGA-AY-A54L-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
In-frame	ENST00000414242	ENST00000381655		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
In-frame	ENST00000414242	ENST00000255283		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
5CDS-intron	ENST00000414242	ENST00000491840		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
In-frame	ENST00000361479	ENST00000381655		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
In-frame	ENST00000361479	ENST00000255283		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
5CDS-intron	ENST00000361479	ENST00000491840		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
intron-3CDS	ENST00000496525	ENST00000381655		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
intron-3CDS	ENST00000496525	ENST00000255283		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
intron-intron	ENST00000496525	ENST00000491840		TCGA	LD	COAD	TCGA-AY-A54L-01A	MPHOSPH8	chr13	20208101	+	ATP8A2	chr13	26535713	+
intron-3CDS	ENST00000540326	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-intron	ENST00000540326	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-3CDS	ENST00000373603	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-intron	ENST00000373603	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
5UTR-3CDS	ENST00000373600	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
5UTR-intron	ENST00000373600	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
5UTR-3CDS	ENST00000320246	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
5UTR-intron	ENST00000320246	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-3CDS	ENST00000545174	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-intron	ENST00000545174	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-3CDS	ENST00000394199	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-intron	ENST00000394199	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-3CDS	ENST00000546191	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-intron	ENST00000546191	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-3CDS	ENST00000539416	ENST00000376447		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
intron-intron	ENST00000539416	ENST00000340717		TCGA	LD	COAD	TCGA-AY-A71X-01A	NEK6	chr9	127020364	+	RASEF	chr9	85616045	-
3UTR-3CDS	ENST00000579301	ENST00000570565		TCGA	LD	COAD	TCGA-AY-A8YK-01A	SMURF2P1	chr17	28937960	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000579301	ENST00000442502		TCGA	LD	COAD	TCGA-AY-A8YK-01A	SMURF2P1	chr17	28937960	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000579301	ENST00000340813		TCGA	LD	COAD	TCGA-AY-A8YK-01A	SMURF2P1	chr17	28937960	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000579301	ENST00000451037		TCGA	LD	COAD	TCGA-AY-A8YK-01A	SMURF2P1	chr17	28937960	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000579301	ENST00000285273		TCGA	LD	COAD	TCGA-AY-A8YK-01A	SMURF2P1	chr17	28937960	+	CA10	chr17	49825178	-
3UTR-5UTR	ENST00000579301	ENST00000571918		TCGA	LD	COAD	TCGA-AY-A8YK-01A	SMURF2P1	chr17	28937960	+	CA10	chr17	49825178	-
In-frame	ENST00000261716	ENST00000262291		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
In-frame	ENST00000261716	ENST00000537567		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000261716	ENST00000539763		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000261716	ENST00000536180		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000261716	ENST00000545362		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000261716	ENST00000588617		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
intron-3CDS	ENST00000536202	ENST00000262291		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
intron-3CDS	ENST00000536202	ENST00000537567		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
intron-5UTR	ENST00000536202	ENST00000539763		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
intron-5UTR	ENST00000536202	ENST00000536180		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
intron-intron	ENST00000536202	ENST00000545362		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
intron-intron	ENST00000536202	ENST00000588617		TCGA	LD	COAD	TCGA-AZ-4323-01A	TAOK1	chr17	27844674	+	VMP1	chr17	57842332	+
In-frame	ENST00000262291	ENST00000345847		TCGA	LD	COAD	TCGA-AZ-4323-01A	VMP1	chr17	57816308	+	KRTAP4-6	chr17	39296700	-
intron-3CDS	ENST00000537567	ENST00000345847		TCGA	LD	COAD	TCGA-AZ-4323-01A	VMP1	chr17	57816308	+	KRTAP4-6	chr17	39296700	-
5UTR-3CDS	ENST00000539763	ENST00000345847		TCGA	LD	COAD	TCGA-AZ-4323-01A	VMP1	chr17	57816308	+	KRTAP4-6	chr17	39296700	-
In-frame	ENST00000536180	ENST00000345847		TCGA	LD	COAD	TCGA-AZ-4323-01A	VMP1	chr17	57816308	+	KRTAP4-6	chr17	39296700	-
In-frame	ENST00000545362	ENST00000345847		TCGA	LD	COAD	TCGA-AZ-4323-01A	VMP1	chr17	57816308	+	KRTAP4-6	chr17	39296700	-
intron-3CDS	ENST00000588617	ENST00000345847		TCGA	LD	COAD	TCGA-AZ-4323-01A	VMP1	chr17	57816308	+	KRTAP4-6	chr17	39296700	-
5UTR-5UTR	ENST00000355897	ENST00000474528		TCGA	LD	COAD	TCGA-AZ-4684-01A	GPR160	chr3	169756831	+	SFXN5	chr2	73227616	-
5UTR-5UTR	ENST00000355897	ENST00000272433		TCGA	LD	COAD	TCGA-AZ-4684-01A	GPR160	chr3	169756831	+	SFXN5	chr2	73227616	-
5UTR-5UTR	ENST00000355897	ENST00000410065		TCGA	LD	COAD	TCGA-AZ-4684-01A	GPR160	chr3	169756831	+	SFXN5	chr2	73227616	-
3UTR-5UTR	ENST00000482813	ENST00000474528		TCGA	LD	COAD	TCGA-AZ-4684-01A	GPR160	chr3	169756831	+	SFXN5	chr2	73227616	-
3UTR-5UTR	ENST00000482813	ENST00000272433		TCGA	LD	COAD	TCGA-AZ-4684-01A	GPR160	chr3	169756831	+	SFXN5	chr2	73227616	-
3UTR-5UTR	ENST00000482813	ENST00000410065		TCGA	LD	COAD	TCGA-AZ-4684-01A	GPR160	chr3	169756831	+	SFXN5	chr2	73227616	-
Frame-shit	ENST00000607452	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
5CDS-intron	ENST00000607452	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-3CDS	ENST00000303536	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-intron	ENST00000303536	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-3CDS	ENST00000394666	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-intron	ENST00000394666	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-3CDS	ENST00000606865	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-intron	ENST00000606865	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
3UTR-3CDS	ENST00000458030	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
3UTR-intron	ENST00000458030	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
Frame-shit	ENST00000422521	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
5CDS-intron	ENST00000422521	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
Frame-shit	ENST00000606082	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
5CDS-intron	ENST00000606082	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-3CDS	ENST00000406041	ENST00000356458		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
intron-intron	ENST00000406041	ENST00000490828		TCGA	LD	COAD	TCGA-AZ-6599-01A	ACYP2	chr2	54200947	+	EML6	chr2	55126778	+
In-frame	ENST00000356175	ENST00000540200		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
5CDS-5UTR	ENST00000356175	ENST00000003607		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
In-frame	ENST00000358273	ENST00000540200		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
5CDS-5UTR	ENST00000358273	ENST00000003607		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-3CDS	ENST00000431387	ENST00000540200		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-5UTR	ENST00000431387	ENST00000003607		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-3CDS	ENST00000581113	ENST00000540200		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-5UTR	ENST00000581113	ENST00000003607		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-3CDS	ENST00000417592	ENST00000540200		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-5UTR	ENST00000417592	ENST00000003607		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-3CDS	ENST00000444181	ENST00000540200		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
intron-5UTR	ENST00000444181	ENST00000003607		TCGA	LD	COAD	TCGA-AZ-6600-01A	NF1	chr17	29592357	+	POLDIP2	chr17	26682902	-
Frame-shit	ENST00000533895	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000533895	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000424158	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000424158	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000532779	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000532779	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000399066	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000399066	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000446070	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000446070	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000528331	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000528331	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000276646	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000276646	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000528647	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000528647	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000440310	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000440310	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000433638	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000433638	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000408908	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000408908	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000408889	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000408889	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000422135	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000422135	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000419099	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000419099	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000533065	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000533065	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000533171	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000533171	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
intron-3CDS	ENST00000529175	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
intron-3CDS	ENST00000529175	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000529690	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
Frame-shit	ENST00000529690	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
intron-3CDS	ENST00000527707	ENST00000239690		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
intron-3CDS	ENST00000527707	ENST00000427660		TCGA	LD	COAD	TCGA-AZ-6600-01A	SYBU	chr8	110598289	-	NUDCD1	chr8	110257710	-
In-frame	ENST00000509093	ENST00000381538		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000509093	ENST00000507489		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000509093	ENST00000329043		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000264389	ENST00000381538		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000264389	ENST00000507489		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000264389	ENST00000329043		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000503682	ENST00000381538		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000503682	ENST00000507489		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000503682	ENST00000329043		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000511653	ENST00000381538		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000511653	ENST00000507489		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
In-frame	ENST00000511653	ENST00000329043		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
3UTR-3CDS	ENST00000511708	ENST00000381538		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
3UTR-3CDS	ENST00000511708	ENST00000507489		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
3UTR-3CDS	ENST00000511708	ENST00000329043		TCGA	LD	COAD	TCGA-AZ-6601-01A	COPS4	chr4	83966858	+	NFXL1	chr4	47888016	-
Frame-shit	ENST00000331373	ENST00000276410		TCGA	LD	COAD	TCGA-AZ-6606-01A	POMK	chr8	42958973	+	CHRNA6	chr8	42620347	-
Frame-shit	ENST00000331373	ENST00000534622		TCGA	LD	COAD	TCGA-AZ-6606-01A	POMK	chr8	42958973	+	CHRNA6	chr8	42620347	-
5CDS-5UTR	ENST00000331373	ENST00000530869		TCGA	LD	COAD	TCGA-AZ-6606-01A	POMK	chr8	42958973	+	CHRNA6	chr8	42620347	-
intron-3CDS	ENST00000282388	ENST00000358138		TCGA	LD	COAD	TCGA-AZ-6607-01A	ZFP36L2	chr8	37706114	-	C8orf86	chr8	38370157	-
intron-intron	ENST00000282388	ENST00000437935		TCGA	LD	COAD	TCGA-AZ-6607-01A	ZFP36L2	chr8	37706114	-	C8orf86	chr8	38370157	-
In-frame	ENST00000393043	ENST00000556440		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
In-frame	ENST00000393043	ENST00000553412		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
5CDS-intron	ENST00000393043	ENST00000581056		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
5CDS-intron	ENST00000393043	ENST00000577476		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
In-frame	ENST00000269122	ENST00000556440		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
In-frame	ENST00000269122	ENST00000553412		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
5CDS-intron	ENST00000269122	ENST00000581056		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
5CDS-intron	ENST00000269122	ENST00000577476		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-3CDS	ENST00000579456	ENST00000556440		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-3CDS	ENST00000579456	ENST00000553412		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-intron	ENST00000579456	ENST00000581056		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-intron	ENST00000579456	ENST00000577476		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-3CDS	ENST00000579815	ENST00000556440		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-3CDS	ENST00000579815	ENST00000553412		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-intron	ENST00000579815	ENST00000581056		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
intron-intron	ENST00000579815	ENST00000577476		TCGA	LD	COAD	TCGA-CA-5254-01A	CLTC	chr17	57739004	+	CEP95	chr17	62532720	+
Frame-shit	ENST00000332674	ENST00000372277		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
Frame-shit	ENST00000332674	ENST00000372281		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
Frame-shit	ENST00000332674	ENST00000372275		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
Frame-shit	ENST00000332674	ENST00000372274		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
5CDS-3UTR	ENST00000332674	ENST00000467529		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000361248	ENST00000372277		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000361248	ENST00000372281		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000361248	ENST00000372275		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000361248	ENST00000372274		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3UTR	ENST00000361248	ENST00000467529		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000239007	ENST00000372277		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000239007	ENST00000372281		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000239007	ENST00000372275		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000239007	ENST00000372274		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3UTR	ENST00000239007	ENST00000467529		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000393134	ENST00000372277		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000393134	ENST00000372281		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000393134	ENST00000372275		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000393134	ENST00000372274		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3UTR	ENST00000393134	ENST00000467529		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000485566	ENST00000372277		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000485566	ENST00000372281		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000485566	ENST00000372275		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000485566	ENST00000372274		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3UTR	ENST00000485566	ENST00000467529		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000369612	ENST00000372277		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000369612	ENST00000372281		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000369612	ENST00000372275		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3CDS	ENST00000369612	ENST00000372274		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
intron-3UTR	ENST00000369612	ENST00000467529		TCGA	LD	COAD	TCGA-CA-5254-01A	MXI1	chr10	111967840	+	TMEM254	chr10	81841597	+
5CDS-intron	ENST00000324262	ENST00000269228		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
5CDS-intron	ENST00000324262	ENST00000412552		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
5CDS-intron	ENST00000324262	ENST00000540608		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
5CDS-intron	ENST00000579847	ENST00000269228		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
5CDS-intron	ENST00000579847	ENST00000412552		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
5CDS-intron	ENST00000579847	ENST00000540608		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
intron-intron	ENST00000580229	ENST00000269228		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
intron-intron	ENST00000580229	ENST00000412552		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
intron-intron	ENST00000580229	ENST00000540608		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
intron-intron	ENST00000324301	ENST00000269228		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
intron-intron	ENST00000324301	ENST00000412552		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
intron-intron	ENST00000324301	ENST00000540608		TCGA	LD	COAD	TCGA-CA-5256-01A	CNDP2	chr18	72173246	+	NPC1	chr18	21086606	-
5CDS-intron	ENST00000261667	ENST00000607334		TCGA	LD	COAD	TCGA-CA-6716-01A	KPNA3	chr13	50279757	-	DLEU2	chr13	50571555	-
In-frame	ENST00000421184	ENST00000263346		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000421184	ENST00000563406		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000421184	ENST00000263347		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
In-frame	ENST00000393092	ENST00000263346		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000393092	ENST00000563406		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000393092	ENST00000263347		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
In-frame	ENST00000261615	ENST00000263346		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000261615	ENST00000563406		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000261615	ENST00000263347		TCGA	LD	COAD	TCGA-CK-4947-01B	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
Frame-shit	ENST00000252804	ENST00000399161		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
Frame-shit	ENST00000252804	ENST00000428368		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
5CDS-5UTR	ENST00000252804	ENST00000407844		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
5CDS-5UTR	ENST00000252804	ENST00000471668		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
intron-3CDS	ENST00000483018	ENST00000399161		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
intron-3CDS	ENST00000483018	ENST00000428368		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
intron-5UTR	ENST00000483018	ENST00000407844		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
intron-5UTR	ENST00000483018	ENST00000471668		TCGA	LD	COAD	TCGA-CK-5913-01A	PXDN	chr2	1748028	-	MYT1L	chr2	1844615	-
5UTR-3CDS	ENST00000357402	ENST00000414689		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000357402	ENST00000279396		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000357402	ENST00000561899		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000357402	ENST00000566848		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000452209	ENST00000414689		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000452209	ENST00000279396		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000452209	ENST00000561899		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000452209	ENST00000566848		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000395353	ENST00000414689		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000395353	ENST00000279396		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000395353	ENST00000561899		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
5UTR-3CDS	ENST00000395353	ENST00000566848		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
intron-3CDS	ENST00000566554	ENST00000414689		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
intron-3CDS	ENST00000566554	ENST00000279396		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
intron-3CDS	ENST00000566554	ENST00000561899		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
intron-3CDS	ENST00000566554	ENST00000566848		TCGA	LD	COAD	TCGA-CK-5915-01A	MVP	chr16	29831831	+	TMEM219	chr16	29979346	+
intron-3CDS	ENST00000421184	ENST00000263346		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000563406		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000263347		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000393092	ENST00000263346		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000563406		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000263347		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000261615	ENST00000263346		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000563406		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000263347		TCGA	LD	COAD	TCGA-CK-6751-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	COAD	TCGA-CM-4743-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	COAD	TCGA-CM-4743-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-intron	ENST00000366882	ENST00000356284		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-intron	ENST00000366882	ENST00000354536		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-3UTR	ENST00000366882	ENST00000477998		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-intron	ENST00000354448	ENST00000356284		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-intron	ENST00000354448	ENST00000354536		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-3UTR	ENST00000354448	ENST00000477998		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-intron	ENST00000539869	ENST00000356284		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-intron	ENST00000539869	ENST00000354536		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
5CDS-3UTR	ENST00000539869	ENST00000477998		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
intron-intron	ENST00000535229	ENST00000356284		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
intron-intron	ENST00000535229	ENST00000354536		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
intron-3UTR	ENST00000535229	ENST00000477998		TCGA	LD	COAD	TCGA-CM-4743-01A	PDE10A	chr6	165844910	-	SMOC2	chr6	169073752	+
intron-3CDS	ENST00000560386	ENST00000332408		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
intron-3CDS	ENST00000560386	ENST00000396535		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
intron-3CDS	ENST00000560386	ENST00000537958		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
Frame-shit	ENST00000256538	ENST00000332408		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
Frame-shit	ENST00000256538	ENST00000396535		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
Frame-shit	ENST00000256538	ENST00000537958		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
Frame-shit	ENST00000440392	ENST00000332408		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
Frame-shit	ENST00000440392	ENST00000396535		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
Frame-shit	ENST00000440392	ENST00000537958		TCGA	LD	COAD	TCGA-CM-5348-01A	DPH6	chr15	35838320	-	SHC4	chr15	49127219	-
In-frame	ENST00000366554	ENST00000366560		TCGA	LD	COAD	TCGA-CM-5348-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5CDS-5UTR	ENST00000366554	ENST00000493477		TCGA	LD	COAD	TCGA-CM-5348-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
In-frame	ENST00000331838	ENST00000366560		TCGA	LD	COAD	TCGA-CM-5348-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5CDS-5UTR	ENST00000331838	ENST00000493477		TCGA	LD	COAD	TCGA-CM-5348-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5UTR-3CDS	ENST00000469376	ENST00000366560		TCGA	LD	COAD	TCGA-CM-5348-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5UTR-5UTR	ENST00000469376	ENST00000493477		TCGA	LD	COAD	TCGA-CM-5348-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5CDS-intron	ENST00000318445	ENST00000560386		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
5CDS-intron	ENST00000318445	ENST00000256538		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
5CDS-intron	ENST00000318445	ENST00000440392		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
5CDS-intron	ENST00000424469	ENST00000560386		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
5CDS-intron	ENST00000424469	ENST00000256538		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
5CDS-intron	ENST00000424469	ENST00000440392		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
3UTR-intron	ENST00000555549	ENST00000560386		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
3UTR-intron	ENST00000555549	ENST00000256538		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
3UTR-intron	ENST00000555549	ENST00000440392		TCGA	LD	COAD	TCGA-CM-5348-01A	SLCO3A1	chr15	92669489	+	DPH6	chr15	35834708	-
5UTR-3CDS	ENST00000561311	ENST00000261893		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
5UTR-3CDS	ENST00000561311	ENST00000413507		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
intron-3CDS	ENST00000306829	ENST00000261893		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
intron-3CDS	ENST00000306829	ENST00000413507		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
intron-3CDS	ENST00000559908	ENST00000261893		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
intron-3CDS	ENST00000559908	ENST00000413507		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
intron-3CDS	ENST00000472902	ENST00000261893		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
intron-3CDS	ENST00000472902	ENST00000413507		TCGA	LD	COAD	TCGA-CM-5348-01A	TLN2	chr15	62881961	+	LACTB	chr15	63414835	+
5CDS-5UTR	ENST00000264335	ENST00000426742		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000264335	ENST00000265038		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-intron	ENST00000264335	ENST00000462279		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000264335	ENST00000543101		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-5UTR	ENST00000571732	ENST00000426742		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-5UTR	ENST00000571732	ENST00000265038		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-intron	ENST00000571732	ENST00000462279		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-5UTR	ENST00000571732	ENST00000543101		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000573026	ENST00000426742		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000573026	ENST00000265038		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-intron	ENST00000573026	ENST00000462279		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000573026	ENST00000543101		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000575977	ENST00000426742		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000575977	ENST00000265038		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-intron	ENST00000575977	ENST00000462279		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000575977	ENST00000543101		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-5UTR	ENST00000498643	ENST00000426742		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-5UTR	ENST00000498643	ENST00000265038		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-intron	ENST00000498643	ENST00000462279		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
5UTR-5UTR	ENST00000498643	ENST00000543101		TCGA	LD	COAD	TCGA-CM-5348-01A	YWHAE	chr17	1303341	-	ERCC8	chr5	60224786	-
intron-3CDS	ENST00000367604	ENST00000316999		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000367604	ENST00000370452		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000367604	ENST00000370455		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-intron	ENST00000367604	ENST00000422334		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000367603	ENST00000316999		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000367603	ENST00000370452		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000367603	ENST00000370455		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-intron	ENST00000367603	ENST00000422334		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000012134	ENST00000316999		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000012134	ENST00000370452		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000012134	ENST00000370455		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-intron	ENST00000012134	ENST00000422334		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000474532	ENST00000316999		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000474532	ENST00000370452		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000474532	ENST00000370455		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-intron	ENST00000474532	ENST00000422334		TCGA	LD	COAD	TCGA-CM-5349-01A	HIVEP2	chr6	143267081	-	SMAP1	chr6	71508360	+
intron-3CDS	ENST00000357613	ENST00000308159		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000357613	ENST00000569842		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000357613	ENST00000564887		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000357613	ENST00000569595		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000357613	ENST00000542526		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
In-frame	ENST00000569540	ENST00000308159		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
In-frame	ENST00000569540	ENST00000569842		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000569540	ENST00000564887		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
5CDS-3UTR	ENST00000569540	ENST00000569595		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000569540	ENST00000542526		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000561878	ENST00000308159		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000561878	ENST00000569842		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000561878	ENST00000564887		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000561878	ENST00000569595		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000561878	ENST00000542526		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000567796	ENST00000308159		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000567796	ENST00000569842		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000567796	ENST00000564887		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000567796	ENST00000569595		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000567796	ENST00000542526		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000566980	ENST00000308159		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000566980	ENST00000569842		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000566980	ENST00000564887		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000566980	ENST00000569595		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000566980	ENST00000542526		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000569276	ENST00000308159		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3CDS	ENST00000569276	ENST00000569842		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000569276	ENST00000564887		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-3UTR	ENST00000569276	ENST00000569595		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
intron-5UTR	ENST00000569276	ENST00000542526		TCGA	LD	COAD	TCGA-CM-5349-01A	TMEM170A	chr16	75498130	-	NUP93	chr16	56839416	+
5CDS-5UTR	ENST00000379151	ENST00000583027		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	MIR5006	chr13	42142441	-
5CDS-5UTR	ENST00000361121	ENST00000583027		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	MIR5006	chr13	42142441	-
5UTR-5UTR	ENST00000357537	ENST00000583027		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	MIR5006	chr13	42142441	-
intron-5UTR	ENST00000473119	ENST00000583027		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	MIR5006	chr13	42142441	-
Frame-shit	ENST00000379151	ENST00000379310		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5CDS-intron	ENST00000379151	ENST00000281496		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5CDS-intron	ENST00000379151	ENST00000478987		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
Frame-shit	ENST00000361121	ENST00000379310		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5CDS-intron	ENST00000361121	ENST00000281496		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5CDS-intron	ENST00000361121	ENST00000478987		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5UTR-3CDS	ENST00000357537	ENST00000379310		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5UTR-intron	ENST00000357537	ENST00000281496		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5UTR-intron	ENST00000357537	ENST00000478987		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
intron-3CDS	ENST00000473119	ENST00000379310		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
intron-intron	ENST00000473119	ENST00000281496		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
intron-intron	ENST00000473119	ENST00000478987		TCGA	LD	COAD	TCGA-CM-5862-01A	GPALPP1	chr13	45583014	+	VWA8	chr13	42142441	-
5CDS-intron	ENST00000240617	ENST00000609686		TCGA	LD	COAD	TCGA-CM-5862-01A	PLBD1	chr12	14720516	-	GRIN2B	chr12	14134510	-
5UTR-3CDS	ENST00000474528	ENST00000579991		TCGA	LD	COAD	TCGA-CM-5868-01A	SFXN5	chr2	73267983	-	DYNLL2	chr17	56166503	+
Frame-shit	ENST00000272433	ENST00000579991		TCGA	LD	COAD	TCGA-CM-5868-01A	SFXN5	chr2	73267983	-	DYNLL2	chr17	56166503	+
Frame-shit	ENST00000410065	ENST00000579991		TCGA	LD	COAD	TCGA-CM-5868-01A	SFXN5	chr2	73267983	-	DYNLL2	chr17	56166503	+
Frame-shit	ENST00000230640	ENST00000398610		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA10	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000398610		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA10	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000398610		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA10	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000398587		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA11	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000518882		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA11	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000398587		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA11	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000518882		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA11	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000398587		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA11	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000518882		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA11	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000252085		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA12	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000252085		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA12	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000252085		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA12	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000398604		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA8	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000398604		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA8	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000398604		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA8	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000573521		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA9	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000573521		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA9	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000573521		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGA9	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000520790		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB6	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000520790		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB6	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000520790		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB6	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000398594		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB7	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000398594		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB7	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000398594		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGB7	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000308177		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC3	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000308177		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC3	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000308177		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC3	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000306593		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC4	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000306593		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC4	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000306593		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC4	chr5	140874374	+
Frame-shit	ENST00000230640	ENST00000252087		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC5	chr5	140874374	+
Frame-shit	ENST00000545714	ENST00000252087		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC5	chr5	140874374	+
intron-3CDS	ENST00000504388	ENST00000252087		TCGA	LD	COAD	TCGA-CM-6163-01A	SKIV2L2	chr5	54624639	+	PCDHGC5	chr5	140874374	+
5CDS-5UTR	ENST00000354981	ENST00000483485		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000354981	ENST00000377759		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000354981	ENST00000377768		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000354981	ENST00000606557		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000354981	ENST00000606602		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000354981	ENST00000481323		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000354981	ENST00000486039		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-5UTR	ENST00000378003	ENST00000483485		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-5UTR	ENST00000378003	ENST00000377759		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-5UTR	ENST00000378003	ENST00000377768		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-intron	ENST00000378003	ENST00000606557		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-intron	ENST00000378003	ENST00000606602		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-intron	ENST00000378003	ENST00000481323		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5UTR-intron	ENST00000378003	ENST00000486039		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000355755	ENST00000483485		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000355755	ENST00000377759		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000355755	ENST00000377768		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000355755	ENST00000606557		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000355755	ENST00000606602		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000355755	ENST00000481323		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000355755	ENST00000486039		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000408042	ENST00000483485		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000408042	ENST00000377759		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-5UTR	ENST00000408042	ENST00000377768		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000408042	ENST00000606557		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000408042	ENST00000606602		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000408042	ENST00000481323		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000408042	ENST00000486039		TCGA	LD	COAD	TCGA-CM-6164-01A	KIF16B	chr20	16506737	-	SNX5	chr20	17923839	-
5CDS-intron	ENST00000305883	ENST00000449601		TCGA	LD	COAD	TCGA-CM-6167-01A	KLF11	chr2	10186546	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000305883	ENST00000434431		TCGA	LD	COAD	TCGA-CM-6167-01A	KLF11	chr2	10186546	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000540845	ENST00000449601		TCGA	LD	COAD	TCGA-CM-6167-01A	KLF11	chr2	10186546	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000540845	ENST00000434431		TCGA	LD	COAD	TCGA-CM-6167-01A	KLF11	chr2	10186546	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000535335	ENST00000449601		TCGA	LD	COAD	TCGA-CM-6167-01A	KLF11	chr2	10186546	+	TMEM247	chr2	46711383	+
5CDS-intron	ENST00000535335	ENST00000434431		TCGA	LD	COAD	TCGA-CM-6167-01A	KLF11	chr2	10186546	+	TMEM247	chr2	46711383	+
In-frame	ENST00000398174	ENST00000245663		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000398174	ENST00000395104		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000398174	ENST00000302995		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
5CDS-intron	ENST00000398174	ENST00000480766		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000340852	ENST00000245663		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000340852	ENST00000395104		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000340852	ENST00000302995		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
5CDS-intron	ENST00000340852	ENST00000480766		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000335574	ENST00000245663		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000335574	ENST00000395104		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000335574	ENST00000302995		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
5CDS-intron	ENST00000335574	ENST00000480766		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000376127	ENST00000245663		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
In-frame	ENST00000376127	ENST00000395104		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000376127	ENST00000302995		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
5CDS-intron	ENST00000376127	ENST00000480766		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
3UTR-3CDS	ENST00000492709	ENST00000245663		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
3UTR-3CDS	ENST00000492709	ENST00000395104		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
3UTR-3CDS	ENST00000492709	ENST00000302995		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
3UTR-intron	ENST00000492709	ENST00000480766		TCGA	LD	COAD	TCGA-CM-6170-01A	HM13	chr20	30137924	+	ZBTB46	chr20	62407315	-
5CDS-5UTR	ENST00000255175	ENST00000356562		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
5CDS-5UTR	ENST00000255175	ENST00000324384		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
5CDS-5UTR	ENST00000342374	ENST00000356562		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
5CDS-5UTR	ENST00000342374	ENST00000324384		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
5CDS-5UTR	ENST00000541235	ENST00000356562		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
5CDS-5UTR	ENST00000541235	ENST00000324384		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
intron-5UTR	ENST00000468234	ENST00000356562		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
intron-5UTR	ENST00000468234	ENST00000324384		TCGA	LD	COAD	TCGA-CM-6170-01A	SERINC3	chr20	43138532	-	WFDC11	chr20	44279290	-
3UTR-5UTR	ENST00000262461	ENST00000521850		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
3UTR-intron	ENST00000262461	ENST00000517575		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
3UTR-intron	ENST00000262461	ENST00000593851		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
3UTR-5UTR	ENST00000343225	ENST00000521850		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
3UTR-intron	ENST00000343225	ENST00000517575		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
3UTR-intron	ENST00000343225	ENST00000593851		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
intron-5UTR	ENST00000507791	ENST00000521850		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
intron-intron	ENST00000507791	ENST00000517575		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
intron-intron	ENST00000507791	ENST00000593851		TCGA	LD	COAD	TCGA-CM-6170-01A	SLC12A2	chr5	127524015	+	C5orf58	chr5	169660264	+
In-frame	ENST00000432306	ENST00000534894		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000536810		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000545257		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000355995		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000543371		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000355717		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000538897		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000349937		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000369397		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000352065		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000432306	ENST00000369395		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000432306	ENST00000542695		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369389		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369386		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000466338		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000534894		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000536810		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000545257		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000355995		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000543371		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000355717		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000538897		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000349937		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000369397		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000352065		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000393077	ENST00000369395		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000393077	ENST00000542695		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369389		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369386		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000466338		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000534894		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000536810		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000545257		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355995		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000543371		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355717		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000538897		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000349937		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369397		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000352065		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369395		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000483122	ENST00000542695		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369389		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369386		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000466338		TCGA	LD	COAD	TCGA-CM-6170-01A	VTI1A	chr10	114224416	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000344930	ENST00000393500		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000393494		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000403559		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000408937		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000350908		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000393498		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000393489		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000393491		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000459666		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000378237		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000360232		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000390668		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000344930	ENST00000462331		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-5UTR	ENST00000423627	ENST00000393500		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000393494		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000403559		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000408937		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000350908		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000393498		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000393489		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000393491		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000459666		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000378237		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000360232		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000390668		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000423627	ENST00000462331		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-5UTR	ENST00000395391	ENST00000393500		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000393494		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000403559		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000408937		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000350908		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000393498		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000393489		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000393491		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000459666		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000378237		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000360232		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000390668		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5CDS-intron	ENST00000395391	ENST00000462331		TCGA	LD	COAD	TCGA-CM-6170-01A	ZNF107	chr7	64152338	+	FOXP2	chr7	113802999	+
5UTR-3CDS	ENST00000396526	ENST00000504830		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-3CDS	ENST00000396526	ENST00000352040		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-5UTR	ENST00000396526	ENST00000504582		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-5UTR	ENST00000396526	ENST00000515401		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-3CDS	ENST00000396534	ENST00000504830		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-3CDS	ENST00000396534	ENST00000352040		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-5UTR	ENST00000396534	ENST00000504582		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-5UTR	ENST00000396534	ENST00000515401		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
In-frame	ENST00000362031	ENST00000504830		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
In-frame	ENST00000362031	ENST00000352040		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000362031	ENST00000504582		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000362031	ENST00000515401		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-3CDS	ENST00000355110	ENST00000504830		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-3CDS	ENST00000355110	ENST00000352040		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-5UTR	ENST00000355110	ENST00000504582		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
5UTR-5UTR	ENST00000355110	ENST00000515401		TCGA	LD	COAD	TCGA-CM-6172-01A	SNX6	chr14	35099113	-	ADAMTS12	chr5	33751653	-
intron-5UTR	ENST00000539115	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000539115	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000539115	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000379188	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000379188	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000379188	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000379177	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000379177	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-intron	ENST00000379177	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000304543	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000304543	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-intron	ENST00000304543	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000459724	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000459724	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000459724	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000540034	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-5UTR	ENST00000540034	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
5UTR-intron	ENST00000540034	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000338565	ENST00000287275		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000338565	ENST00000532258		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000338565	ENST00000533636		TCGA	LD	COAD	TCGA-CM-6172-01A	ZFX	chrX	24170947	+	GLYATL2	chr11	58611997	-
intron-3CDS	ENST00000464615	ENST00000418310		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
intron-3CDS	ENST00000464615	ENST00000336180		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
intron-3CDS	ENST00000464615	ENST00000538333		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
intron-3UTR	ENST00000464615	ENST00000491052		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
In-frame	ENST00000265758	ENST00000418310		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
In-frame	ENST00000265758	ENST00000336180		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
In-frame	ENST00000265758	ENST00000538333		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
5CDS-3UTR	ENST00000265758	ENST00000491052		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
3UTR-3CDS	ENST00000423166	ENST00000418310		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
3UTR-3CDS	ENST00000423166	ENST00000336180		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
3UTR-3CDS	ENST00000423166	ENST00000538333		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
3UTR-3UTR	ENST00000423166	ENST00000491052		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
In-frame	ENST00000423497	ENST00000418310		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
In-frame	ENST00000423497	ENST00000336180		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
In-frame	ENST00000423497	ENST00000538333		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
5CDS-3UTR	ENST00000423497	ENST00000491052		TCGA	LD	COAD	TCGA-CM-6675-01A	WBSCR22	chr7	73112024	+	LIMK1	chr7	73520205	+
5CDS-intron	ENST00000325722	ENST00000393217		TCGA	LD	COAD	TCGA-CM-6677-01A	KIAA0319L	chr1	35925906	-	LRRIQ1	chr12	85656693	+
5CDS-3UTR	ENST00000325722	ENST00000528777		TCGA	LD	COAD	TCGA-CM-6677-01A	KIAA0319L	chr1	35925906	-	LRRIQ1	chr12	85656693	+
intron-intron	ENST00000373266	ENST00000393217		TCGA	LD	COAD	TCGA-CM-6677-01A	KIAA0319L	chr1	35925906	-	LRRIQ1	chr12	85656693	+
intron-3UTR	ENST00000373266	ENST00000528777		TCGA	LD	COAD	TCGA-CM-6677-01A	KIAA0319L	chr1	35925906	-	LRRIQ1	chr12	85656693	+
5UTR-intron	ENST00000485551	ENST00000393217		TCGA	LD	COAD	TCGA-CM-6677-01A	KIAA0319L	chr1	35925906	-	LRRIQ1	chr12	85656693	+
5UTR-3UTR	ENST00000485551	ENST00000528777		TCGA	LD	COAD	TCGA-CM-6677-01A	KIAA0319L	chr1	35925906	-	LRRIQ1	chr12	85656693	+
intron-3CDS	ENST00000421184	ENST00000263346		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000563406		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000263347		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000393092	ENST00000263346		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000563406		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000263347		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000261615	ENST00000263346		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000563406		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000263347		TCGA	LD	COAD	TCGA-CM-6680-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000378641	ENST00000278795		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378641	ENST00000305958		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378641	ENST00000339123		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378641	ENST00000484515		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378641	ENST00000346595		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378641	ENST00000379460		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000338037	ENST00000278795		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000338037	ENST00000305958		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000338037	ENST00000339123		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000338037	ENST00000484515		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000338037	ENST00000346595		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000338037	ENST00000379460		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378637	ENST00000278795		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378637	ENST00000305958		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378637	ENST00000339123		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378637	ENST00000484515		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378637	ENST00000346595		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-intron	ENST00000378637	ENST00000379460		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
3UTR-intron	ENST00000494924	ENST00000278795		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
3UTR-intron	ENST00000494924	ENST00000305958		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
3UTR-intron	ENST00000494924	ENST00000339123		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
3UTR-intron	ENST00000494924	ENST00000484515		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
3UTR-intron	ENST00000494924	ENST00000346595		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
3UTR-intron	ENST00000494924	ENST00000379460		TCGA	LD	COAD	TCGA-D5-5541-01A	PLCB1	chr20	8714039	+	SMOX	chr20	4101627	+
5CDS-5UTR	ENST00000354532	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000354532	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000599846	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000599846	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
intron-5UTR	ENST00000596957	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
intron-5UTR	ENST00000596957	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000347545	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000347545	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000378152	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000378152	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000337665	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000337665	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6529-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
intron-5UTR	ENST00000370790	ENST00000359282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000603815		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000437231		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000447282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000549863		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000359462		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000546463		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000552296		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000370790	ENST00000552819		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000370790	ENST00000455667		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000370790	ENST00000439930		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000370790	ENST00000548933		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000370790	ENST00000541275		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000359282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000603815		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000437231		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000447282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000549863		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000359462		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000546463		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000552296		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000343004	ENST00000552819		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000343004	ENST00000455667		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000343004	ENST00000439930		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000343004	ENST00000548933		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000343004	ENST00000541275		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000359282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000603815		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000437231		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000447282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000549863		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000359462		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000546463		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000552296		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000298090	ENST00000552819		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000298090	ENST00000455667		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000298090	ENST00000439930		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000298090	ENST00000548933		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000298090	ENST00000541275		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000359282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000603815		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000437231		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000447282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000549863		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000359462		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000546463		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000552296		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000486347	ENST00000552819		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000486347	ENST00000455667		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000486347	ENST00000439930		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000486347	ENST00000548933		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000486347	ENST00000541275		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000359282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000603815		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000437231		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000447282		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000549863		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000359462		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000546463		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000552296		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000493333	ENST00000552819		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000493333	ENST00000455667		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000493333	ENST00000439930		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-intron	ENST00000493333	ENST00000548933		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
5UTR-5UTR	ENST00000493333	ENST00000541275		TCGA	LD	COAD	TCGA-D5-6529-01A	FAM122B	chrX	133931151	-	PCBP2	chr12	53848510	+
In-frame	ENST00000395952	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000395952	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000395952	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000395952	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000395952	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-3CDS	ENST00000375842	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-3CDS	ENST00000375842	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-3CDS	ENST00000375842	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-3CDS	ENST00000375842	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5UTR-intron	ENST00000375842	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000440843	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000440843	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000440843	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
In-frame	ENST00000440843	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000440843	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000471644	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000471644	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000471644	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000471644	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000471644	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
Frame-shit	ENST00000538874	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
Frame-shit	ENST00000538874	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
Frame-shit	ENST00000538874	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
Frame-shit	ENST00000538874	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
5CDS-intron	ENST00000538874	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550556	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550556	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550556	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550556	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550556	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547161	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547161	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547161	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547161	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547161	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000464268	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000464268	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000464268	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000464268	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000464268	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000444818	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000444818	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000444818	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000444818	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000444818	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000551038	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000551038	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000551038	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000551038	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000551038	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549543	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549543	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549543	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549543	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549543	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000494438	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000494438	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000494438	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000494438	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000494438	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000413853	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000413853	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000413853	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000413853	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000413853	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549853	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549853	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549853	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549853	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549853	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547325	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547325	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547325	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000547325	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000547325	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000488103	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000488103	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000488103	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000488103	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000488103	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000457366	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000457366	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000457366	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000457366	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000457366	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000548592	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000548592	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000548592	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000548592	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000548592	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000482058	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000482058	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000482058	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000482058	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000482058	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000446529	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000446529	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000446529	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000446529	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000446529	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000552042	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000552042	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000552042	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000552042	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000552042	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000546528	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000546528	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000546528	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000546528	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000546528	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000475067	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000475067	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000475067	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000475067	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000475067	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000429735	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000429735	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000429735	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000429735	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000429735	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549722	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549722	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549722	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000549722	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000549722	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550719	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550719	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550719	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000550719	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000550719	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000495335	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000495335	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000495335	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000495335	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000495335	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000432617	ENST00000375784		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000432617	ENST00000375779		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000432617	ENST00000375780		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-3CDS	ENST00000432617	ENST00000395892		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000457485		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000423804		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000447369		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000447338		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000422167		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000438708		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000431921		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000415179		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000418285		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000423055		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000442045		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000435242		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000400052		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000383404		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000383405		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000400058		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000456863		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000434202		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000420458		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000433916		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000425464		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000423143		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000438750		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
intron-intron	ENST00000432617	ENST00000451546		TCGA	LD	COAD	TCGA-D5-6531-01A	ABHD16A	chr6	31668719	-	CLIC1	chr6	31700175	-
Frame-shit	ENST00000256079	ENST00000256062		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
Frame-shit	ENST00000256079	ENST00000551659		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
Frame-shit	ENST00000256079	ENST00000552618		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
5CDS-5UTR	ENST00000256079	ENST00000319685		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
5CDS-5UTR	ENST00000256079	ENST00000539277		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
5CDS-5UTR	ENST00000256079	ENST00000381224		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-3CDS	ENST00000544829	ENST00000256062		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-3CDS	ENST00000544829	ENST00000551659		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-3CDS	ENST00000544829	ENST00000552618		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-5UTR	ENST00000544829	ENST00000319685		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-5UTR	ENST00000544829	ENST00000539277		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-5UTR	ENST00000544829	ENST00000381224		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-3CDS	ENST00000538338	ENST00000256062		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-3CDS	ENST00000538338	ENST00000551659		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-3CDS	ENST00000538338	ENST00000552618		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-5UTR	ENST00000538338	ENST00000319685		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-5UTR	ENST00000538338	ENST00000539277		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
intron-5UTR	ENST00000538338	ENST00000381224		TCGA	LD	COAD	TCGA-D5-6533-01A	IPO8	chr12	30848498	-	TMTC1	chr12	29689250	-
Frame-shit	ENST00000515837	ENST00000306078		TCGA	LD	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160804	+	KCNG3	chr2	42671719	-
Frame-shit	ENST00000515837	ENST00000394973		TCGA	LD	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160804	+	KCNG3	chr2	42671719	-
Frame-shit	ENST00000334888	ENST00000306078		TCGA	LD	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160804	+	KCNG3	chr2	42671719	-
Frame-shit	ENST00000334888	ENST00000394973		TCGA	LD	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160804	+	KCNG3	chr2	42671719	-
5UTR-3CDS	ENST00000398979	ENST00000306078		TCGA	LD	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160804	+	KCNG3	chr2	42671719	-
5UTR-3CDS	ENST00000398979	ENST00000394973		TCGA	LD	COAD	TCGA-D5-6534-01A	TMEM216	chr11	61160804	+	KCNG3	chr2	42671719	-
In-frame	ENST00000409839	ENST00000440909		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000448921		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000437397		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000355814		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000393087		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000393088		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000404814		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000449399		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
In-frame	ENST00000409839	ENST00000402629		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
5CDS-intron	ENST00000409839	ENST00000555289		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000440909		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000448921		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000437397		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000355814		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000393087		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000393088		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000404814		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000449399		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000393878	ENST00000402629		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
5CDS-intron	ENST00000393878	ENST00000555289		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000440909		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000448921		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000437397		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000355814		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000393087		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000393088		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000404814		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000449399		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
Frame-shit	ENST00000305165	ENST00000402629		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
5CDS-intron	ENST00000305165	ENST00000555289		TCGA	LD	COAD	TCGA-D5-6536-01A	REG3A	chr2	79385774	-	SERPINA1	chr14	94847478	-
5CDS-5UTR	ENST00000357641	ENST00000373731		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-intron	ENST00000357641	ENST00000474988		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000357641	ENST00000544295		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000357641	ENST00000449081		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000357641	ENST00000536244		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000339717	ENST00000373731		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-intron	ENST00000339717	ENST00000474988		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000339717	ENST00000544295		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000339717	ENST00000449081		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000339717	ENST00000536244		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000534694	ENST00000373731		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-intron	ENST00000534694	ENST00000474988		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000534694	ENST00000544295		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000534694	ENST00000449081		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000534694	ENST00000536244		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000543502	ENST00000373731		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-intron	ENST00000543502	ENST00000474988		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000543502	ENST00000544295		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000543502	ENST00000449081		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000543502	ENST00000536244		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000443324	ENST00000373731		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-intron	ENST00000443324	ENST00000474988		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000443324	ENST00000544295		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000443324	ENST00000449081		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000443324	ENST00000536244		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000534400	ENST00000373731		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
intron-intron	ENST00000534400	ENST00000474988		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000534400	ENST00000544295		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000534400	ENST00000449081		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000534400	ENST00000536244		TCGA	LD	COAD	TCGA-D5-6539-01A	BRPF3	chr6	36193141	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000354532	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000354532	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000599846	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000599846	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
intron-5UTR	ENST00000596957	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
intron-5UTR	ENST00000596957	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000347545	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000347545	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000378152	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000378152	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000337665	ENST00000338761		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5CDS-5UTR	ENST00000337665	ENST00000493111		TCGA	LD	COAD	TCGA-D5-6541-01A	ARHGEF1	chr19	42400555	+	TMEM120A	chr7	75617834	-
5UTR-intron	ENST00000392446	ENST00000423230		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000392446	ENST00000398656		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000392446	ENST00000534366		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000392446	ENST00000528919		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000392446	ENST00000326134		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000392446	ENST00000527071		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000392446	ENST00000544576		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000423230		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000398656		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000534366		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000528919		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000326134		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000527071		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000302345	ENST00000544576		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000423230		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000398656		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000534366		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000528919		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000326134		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000527071		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591773	ENST00000544576		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000423230		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000398656		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000534366		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000528919		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000326134		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000527071		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5UTR-intron	ENST00000591732	ENST00000544576		TCGA	LD	COAD	TCGA-D5-6541-01A	CANT1	chr17	77005746	-	MROH1	chr8	145275503	+
5CDS-5UTR	ENST00000325722	ENST00000378609		TCGA	LD	COAD	TCGA-D5-6922-01A	KIAA0319L	chr1	35928222	-	GNB1	chr1	1770677	-
5CDS-5UTR	ENST00000325722	ENST00000472614		TCGA	LD	COAD	TCGA-D5-6922-01A	KIAA0319L	chr1	35928222	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000373266	ENST00000378609		TCGA	LD	COAD	TCGA-D5-6922-01A	KIAA0319L	chr1	35928222	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000373266	ENST00000472614		TCGA	LD	COAD	TCGA-D5-6922-01A	KIAA0319L	chr1	35928222	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000485551	ENST00000378609		TCGA	LD	COAD	TCGA-D5-6922-01A	KIAA0319L	chr1	35928222	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000485551	ENST00000472614		TCGA	LD	COAD	TCGA-D5-6922-01A	KIAA0319L	chr1	35928222	-	GNB1	chr1	1770677	-
In-frame	ENST00000366554	ENST00000366560		TCGA	LD	COAD	TCGA-D5-6923-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5CDS-5UTR	ENST00000366554	ENST00000493477		TCGA	LD	COAD	TCGA-D5-6923-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
In-frame	ENST00000331838	ENST00000366560		TCGA	LD	COAD	TCGA-D5-6923-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5CDS-5UTR	ENST00000331838	ENST00000493477		TCGA	LD	COAD	TCGA-D5-6923-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5UTR-3CDS	ENST00000469376	ENST00000366560		TCGA	LD	COAD	TCGA-D5-6923-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
5UTR-5UTR	ENST00000469376	ENST00000493477		TCGA	LD	COAD	TCGA-D5-6923-01A	OPN3	chr1	241803184	-	FH	chr1	241680616	-
intron-3CDS	ENST00000378034	ENST00000416383		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
intron-3CDS	ENST00000378034	ENST00000298876		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
intron-3CDS	ENST00000378034	ENST00000535986		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
intron-intron	ENST00000378034	ENST00000538647		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000258607	ENST00000416383		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000258607	ENST00000298876		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000258607	ENST00000535986		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
5CDS-intron	ENST00000258607	ENST00000538647		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000378037	ENST00000416383		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000378037	ENST00000298876		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000378037	ENST00000535986		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
5CDS-intron	ENST00000378037	ENST00000538647		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000490903	ENST00000416383		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000490903	ENST00000298876		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
In-frame	ENST00000490903	ENST00000535986		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
5CDS-intron	ENST00000490903	ENST00000538647		TCGA	LD	COAD	TCGA-D5-6926-01A	CKAP2	chr13	53048219	+	SMCO2	chr12	27654856	+
5UTR-3CDS	ENST00000283365	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000283365	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000283365	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000283365	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-5UTR	ENST00000283365	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-5UTR	ENST00000283365	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-intron	ENST00000283365	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-intron	ENST00000283365	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000596745	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000596745	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000596745	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000596745	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-5UTR	ENST00000596745	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-5UTR	ENST00000596745	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-intron	ENST00000596745	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-intron	ENST00000596745	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000315456	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000315456	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000315456	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-3CDS	ENST00000315456	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-5UTR	ENST00000315456	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-5UTR	ENST00000315456	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-intron	ENST00000315456	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
5UTR-intron	ENST00000315456	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598334	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598334	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598334	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598334	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000598334	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000598334	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000598334	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000598334	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000554864	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000554864	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000554864	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000554864	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000554864	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000554864	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000554864	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000554864	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399121	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399121	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399121	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399121	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000399121	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000399121	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000399121	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000399121	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000595022	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000595022	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000595022	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000595022	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000595022	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000595022	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000595022	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000595022	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269190	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269190	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269190	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269190	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000269190	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000269190	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000269190	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000269190	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399097	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399097	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399097	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399097	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000399097	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000399097	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000399097	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000399097	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598774	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598774	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598774	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598774	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000598774	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000598774	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000598774	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000598774	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598142	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598142	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598142	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000598142	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000598142	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000598142	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000598142	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000598142	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000348997	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000348997	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000348997	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000348997	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000348997	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000348997	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000348997	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000348997	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597599	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597599	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597599	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597599	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000597599	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000597599	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000597599	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000597599	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269191	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269191	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269191	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269191	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000269191	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000269191	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000269191	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000269191	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000444659	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000444659	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000444659	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000444659	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000444659	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000444659	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000444659	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000444659	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399113	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399113	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399113	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000399113	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000399113	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000399113	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000399113	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000399113	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000601125	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000601125	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000601125	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000601125	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000601125	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000601125	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000601125	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000601125	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269192	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269192	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269192	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000269192	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000269192	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000269192	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000269192	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000269192	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000591182	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000591182	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000591182	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000591182	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000591182	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000591182	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000591182	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000591182	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597674	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597674	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597674	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000597674	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000597674	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000597674	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000597674	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000597674	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000556414	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000556414	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000556414	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000556414	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000556414	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000556414	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000556414	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000556414	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000599844	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000599844	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000599844	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000599844	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000599844	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000599844	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000599844	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000599844	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000590831	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000590831	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000590831	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000590831	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000590831	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000590831	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000590831	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000590831	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000592449	ENST00000361205		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000592449	ENST00000399848		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000592449	ENST00000359446		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-3CDS	ENST00000592449	ENST00000587757		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000592449	ENST00000585931		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-5UTR	ENST00000592449	ENST00000586765		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000592449	ENST00000590308		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
intron-intron	ENST00000592449	ENST00000592991		TCGA	LD	COAD	TCGA-D5-6929-01A	DTNA	chr18	32073478	+	LDLRAD4	chr18	13621116	+
Frame-shit	ENST00000354329	ENST00000318217		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
In-frame	ENST00000354329	ENST00000394649		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000354329	ENST00000579584		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000354329	ENST00000584232		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000354329	ENST00000583621		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5UTR-3CDS	ENST00000529578	ENST00000318217		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5UTR-3CDS	ENST00000529578	ENST00000394649		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5UTR-intron	ENST00000529578	ENST00000579584		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5UTR-intron	ENST00000529578	ENST00000584232		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5UTR-intron	ENST00000529578	ENST00000583621		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
Frame-shit	ENST00000533112	ENST00000318217		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
In-frame	ENST00000533112	ENST00000394649		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000533112	ENST00000579584		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000533112	ENST00000584232		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000533112	ENST00000583621		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
Frame-shit	ENST00000531253	ENST00000318217		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
In-frame	ENST00000531253	ENST00000394649		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000531253	ENST00000579584		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000531253	ENST00000584232		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000531253	ENST00000583621		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
Frame-shit	ENST00000527372	ENST00000318217		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
In-frame	ENST00000527372	ENST00000394649		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000527372	ENST00000579584		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000527372	ENST00000584232		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000527372	ENST00000583621		TCGA	LD	COAD	TCGA-D5-6929-01A	MYO18A	chr17	27409334	-	MYO1D	chr17	30821933	-
In-frame	ENST00000571995	ENST00000588240		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
In-frame	ENST00000571995	ENST00000592237		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
In-frame	ENST00000571995	ENST00000311979		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
intron-3CDS	ENST00000571880	ENST00000588240		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
intron-3CDS	ENST00000571880	ENST00000592237		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
intron-3CDS	ENST00000571880	ENST00000311979		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
5UTR-3CDS	ENST00000269347	ENST00000588240		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
5UTR-3CDS	ENST00000269347	ENST00000592237		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
5UTR-3CDS	ENST00000269347	ENST00000311979		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
In-frame	ENST00000538809	ENST00000588240		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
In-frame	ENST00000538809	ENST00000592237		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
In-frame	ENST00000538809	ENST00000311979		TCGA	LD	COAD	TCGA-D5-6929-01A	RAB40B	chr17	80656331	-	TAF15	chr17	34165428	+
intron-3CDS	ENST00000342234	ENST00000390242		TCGA	LD	COAD	TCGA-D5-6929-01A	SP6	chr17	45924405	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000536300	ENST00000390242		TCGA	LD	COAD	TCGA-D5-6929-01A	SP6	chr17	45924405	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000590652	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
intron-intron	ENST00000590652	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
In-frame	ENST00000587129	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000587129	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
In-frame	ENST00000590842	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000590842	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
In-frame	ENST00000334295	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000334295	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
In-frame	ENST00000593035	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000593035	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
In-frame	ENST00000383056	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000383056	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
In-frame	ENST00000589049	ENST00000257192		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000589049	ENST00000462981		TCGA	LD	COAD	TCGA-D5-6929-01A	TPGS2	chr18	34398857	-	DSG1	chr18	28906544	+
5CDS-intron	ENST00000300896	ENST00000299341		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000300896	ENST00000376352		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000300896	ENST00000405898		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000300896	ENST00000434978		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000300896	ENST00000398391		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000592339	ENST00000299341		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000592339	ENST00000376352		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000592339	ENST00000405898		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000592339	ENST00000434978		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-intron	ENST00000592339	ENST00000398391		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000393003	ENST00000299341		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000393003	ENST00000376352		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000393003	ENST00000405898		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000393003	ENST00000434978		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000393003	ENST00000398391		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000586881	ENST00000299341		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000586881	ENST00000376352		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000586881	ENST00000405898		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000586881	ENST00000434978		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
intron-intron	ENST00000586881	ENST00000398391		TCGA	LD	COAD	TCGA-D5-6929-01A	USP32	chr17	58258685	-	STXBP4	chr17	53150261	+
5CDS-5UTR	ENST00000279550	ENST00000261168		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000279550	ENST00000543189		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000279550	ENST00000536444		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000279550	ENST00000544627		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-3UTR	ENST00000279550	ENST00000541654		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000279550	ENST00000540793		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000228251	ENST00000261168		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000228251	ENST00000543189		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000228251	ENST00000536444		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000228251	ENST00000544627		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-3UTR	ENST00000228251	ENST00000541654		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
5CDS-5UTR	ENST00000228251	ENST00000540793		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000546164	ENST00000261168		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000546164	ENST00000543189		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000546164	ENST00000536444		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000546164	ENST00000544627		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
intron-3UTR	ENST00000546164	ENST00000541654		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
intron-5UTR	ENST00000546164	ENST00000540793		TCGA	LD	COAD	TCGA-D5-6929-01A	YBX3	chr12	10865810	-	ATF7IP	chr12	14576843	+
In-frame	ENST00000373830	ENST00000345512		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
In-frame	ENST00000373830	ENST00000373779		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
In-frame	ENST00000373830	ENST00000356870		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
In-frame	ENST00000373830	ENST00000323874		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
In-frame	ENST00000373830	ENST00000428026		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
In-frame	ENST00000373830	ENST00000460170		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
5CDS-3UTR	ENST00000373830	ENST00000415600		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3CDS	ENST00000495995	ENST00000345512		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3CDS	ENST00000495995	ENST00000373779		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3CDS	ENST00000495995	ENST00000356870		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3CDS	ENST00000495995	ENST00000323874		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3CDS	ENST00000495995	ENST00000428026		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3CDS	ENST00000495995	ENST00000460170		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
3UTR-3UTR	ENST00000495995	ENST00000415600		TCGA	LD	COAD	TCGA-D5-6931-01A	TRNAU1AP	chr1	28880249	+	PTPRU	chr1	29618381	+
In-frame	ENST00000403729	ENST00000601375		TCGA	LD	COAD	TCGA-D5-6932-01A	ANTXR2	chr4	80952777	-	OR7E94P	chr4	80509244	-
intron-3CDS	ENST00000482406	ENST00000601375		TCGA	LD	COAD	TCGA-D5-6932-01A	ANTXR2	chr4	80952777	-	OR7E94P	chr4	80509244	-
Frame-shit	ENST00000404191	ENST00000601375		TCGA	LD	COAD	TCGA-D5-6932-01A	ANTXR2	chr4	80952777	-	OR7E94P	chr4	80509244	-
intron-3CDS	ENST00000346652	ENST00000601375		TCGA	LD	COAD	TCGA-D5-6932-01A	ANTXR2	chr4	80952777	-	OR7E94P	chr4	80509244	-
In-frame	ENST00000307333	ENST00000601375		TCGA	LD	COAD	TCGA-D5-6932-01A	ANTXR2	chr4	80952777	-	OR7E94P	chr4	80509244	-
In-frame	ENST00000295465	ENST00000601375		TCGA	LD	COAD	TCGA-D5-6932-01A	ANTXR2	chr4	80952777	-	OR7E94P	chr4	80509244	-
In-frame	ENST00000295025	ENST00000402291		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000295025	ENST00000356719		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000295025	ENST00000295031		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000295025	ENST00000453873		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000295025	ENST00000482513		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000394479	ENST00000402291		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000394479	ENST00000356719		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000394479	ENST00000295031		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000394479	ENST00000453873		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000394479	ENST00000482513		TCGA	LD	COAD	TCGA-D5-6932-01A	REL	chr2	61145741	+	KIAA1841	chr2	61343114	+
In-frame	ENST00000391976	ENST00000379802		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
In-frame	ENST00000391976	ENST00000418664		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
In-frame	ENST00000310931	ENST00000379802		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
In-frame	ENST00000310931	ENST00000418664		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
Frame-shit	ENST00000391975	ENST00000379802		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
Frame-shit	ENST00000391975	ENST00000418664		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
In-frame	ENST00000427183	ENST00000379802		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
In-frame	ENST00000427183	ENST00000418664		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
intron-3CDS	ENST00000476807	ENST00000379802		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
intron-3CDS	ENST00000476807	ENST00000418664		TCGA	LD	COAD	TCGA-DM-A0X9-01A	HDLBP	chr2	242173235	-	DSP	chr6	7576527	+
Frame-shit	ENST00000357236	ENST00000377452		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000357236	ENST00000494921		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
In-frame	ENST00000329494	ENST00000377452		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000329494	ENST00000494921		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
In-frame	ENST00000262547	ENST00000377452		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000262547	ENST00000494921		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
5UTR-3CDS	ENST00000487128	ENST00000377452		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
5UTR-intron	ENST00000487128	ENST00000494921		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000358866	ENST00000377452		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000358866	ENST00000494921		TCGA	LD	COAD	TCGA-DM-A0XD-01A	DZANK1	chr20	18407711	-	DTD1	chr20	18724744	+
In-frame	ENST00000395863	ENST00000298049		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
5CDS-5UTR	ENST00000395863	ENST00000217182		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
In-frame	ENST00000395864	ENST00000298049		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
5CDS-5UTR	ENST00000395864	ENST00000217182		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
In-frame	ENST00000450594	ENST00000298049		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
5CDS-5UTR	ENST00000450594	ENST00000217182		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
intron-3CDS	ENST00000460817	ENST00000298049		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
intron-5UTR	ENST00000460817	ENST00000217182		TCGA	LD	COAD	TCGA-DM-A0XF-01A	BMP7	chr20	55840761	-	EEF1A2	chr20	62129187	-
In-frame	ENST00000466830	ENST00000383768		TCGA	LD	COAD	TCGA-DM-A0XF-01A	CMC1	chr3	28304871	+	ZCWPW2	chr3	28533618	+
In-frame	ENST00000466830	ENST00000421010		TCGA	LD	COAD	TCGA-DM-A0XF-01A	CMC1	chr3	28304871	+	ZCWPW2	chr3	28533618	+
intron-3CDS	ENST00000423894	ENST00000383768		TCGA	LD	COAD	TCGA-DM-A0XF-01A	CMC1	chr3	28304871	+	ZCWPW2	chr3	28533618	+
intron-3CDS	ENST00000423894	ENST00000421010		TCGA	LD	COAD	TCGA-DM-A0XF-01A	CMC1	chr3	28304871	+	ZCWPW2	chr3	28533618	+
intron-3CDS	ENST00000469102	ENST00000383768		TCGA	LD	COAD	TCGA-DM-A0XF-01A	CMC1	chr3	28304871	+	ZCWPW2	chr3	28533618	+
intron-3CDS	ENST00000469102	ENST00000421010		TCGA	LD	COAD	TCGA-DM-A0XF-01A	CMC1	chr3	28304871	+	ZCWPW2	chr3	28533618	+
intron-3CDS	ENST00000535924	ENST00000606738		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-5UTR	ENST00000535924	ENST00000435576		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-3CDS	ENST00000483110	ENST00000606738		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-5UTR	ENST00000483110	ENST00000435576		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
In-frame	ENST00000284031	ENST00000606738		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
5CDS-5UTR	ENST00000284031	ENST00000435576		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
In-frame	ENST00000539042	ENST00000606738		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
5CDS-5UTR	ENST00000539042	ENST00000435576		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-3CDS	ENST00000426972	ENST00000606738		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-5UTR	ENST00000426972	ENST00000435576		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-3CDS	ENST00000542148	ENST00000606738		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
intron-5UTR	ENST00000542148	ENST00000435576		TCGA	LD	COAD	TCGA-DM-A0XF-01A	DDAH1	chr1	85930426	-	TRABD2B	chr1	48267291	-
In-frame	ENST00000343882	ENST00000530927		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
In-frame	ENST00000343882	ENST00000380815		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
5CDS-intron	ENST00000343882	ENST00000467288		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
In-frame	ENST00000406360	ENST00000530927		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
In-frame	ENST00000406360	ENST00000380815		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
5CDS-intron	ENST00000406360	ENST00000467288		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
intron-3CDS	ENST00000540898	ENST00000530927		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
intron-3CDS	ENST00000540898	ENST00000380815		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
intron-intron	ENST00000540898	ENST00000467288		TCGA	LD	COAD	TCGA-DM-A0XF-01A	FOXO3	chr6	108883032	+	GMDS	chr6	1961200	-
Frame-shit	ENST00000481195	ENST00000231512		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	C5orf15	chr5	133295711	-
5CDS-5UTR	ENST00000481195	ENST00000507191		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	C5orf15	chr5	133295711	-
5UTR-3CDS	ENST00000231504	ENST00000231512		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	C5orf15	chr5	133295711	-
5UTR-5UTR	ENST00000231504	ENST00000507191		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	C5orf15	chr5	133295711	-
In-frame	ENST00000481195	ENST00000395044		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
In-frame	ENST00000481195	ENST00000265333		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
In-frame	ENST00000481195	ENST00000395047		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
5CDS-intron	ENST00000481195	ENST00000466080		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
5UTR-3CDS	ENST00000231504	ENST00000395044		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
5UTR-3CDS	ENST00000231504	ENST00000265333		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
5UTR-3CDS	ENST00000231504	ENST00000395047		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
5UTR-intron	ENST00000231504	ENST00000466080		TCGA	LD	COAD	TCGA-DM-A0XF-01A	PPP2CA	chr5	133561451	-	VDAC1	chr5	133309539	-
In-frame	ENST00000373803	ENST00000358791		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000373803	ENST00000262591		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000373803	ENST00000371608		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000373803	ENST00000609336		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000373803	ENST00000485049		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000359675	ENST00000358791		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000359675	ENST00000262591		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000359675	ENST00000371608		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000359675	ENST00000609336		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000359675	ENST00000485049		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000349004	ENST00000358791		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000349004	ENST00000262591		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000349004	ENST00000371608		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000349004	ENST00000609336		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000349004	ENST00000485049		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
Frame-shit	ENST00000373773	ENST00000358791		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
Frame-shit	ENST00000373773	ENST00000262591		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
Frame-shit	ENST00000373773	ENST00000371608		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
Frame-shit	ENST00000373773	ENST00000609336		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000373773	ENST00000485049		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000540765	ENST00000358791		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000540765	ENST00000262591		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000540765	ENST00000371608		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000540765	ENST00000609336		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000540765	ENST00000485049		TCGA	LD	COAD	TCGA-DM-A1D0-01A	NDRG3	chr20	35310921	-	BCAS4	chr20	49434748	+
In-frame	ENST00000374586	ENST00000374647		TCGA	LD	COAD	TCGA-DM-A1D4-01A	TMEM245	chr9	111843119	-	IKBKAP	chr9	111689733	-
5CDS-intron	ENST00000374586	ENST00000537196		TCGA	LD	COAD	TCGA-DM-A1D4-01A	TMEM245	chr9	111843119	-	IKBKAP	chr9	111689733	-
5CDS-intron	ENST00000374586	ENST00000467959		TCGA	LD	COAD	TCGA-DM-A1D4-01A	TMEM245	chr9	111843119	-	IKBKAP	chr9	111689733	-
In-frame	ENST00000519824	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519824	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519824	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519824	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000519824	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000519824	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000522746	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000522746	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000522746	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000522746	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000522746	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000522746	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000523509	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000523509	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000523509	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000523509	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000523509	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000523509	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000401979	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000401979	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000401979	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000401979	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000401979	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000401979	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000519110	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000519110	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000519110	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000519110	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000519110	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000519110	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522250	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522250	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522250	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522250	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-intron	ENST00000522250	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-5UTR	ENST00000522250	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000517654	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000517654	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000517654	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
Frame-shit	ENST00000517654	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000517654	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000517654	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519540	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519540	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519540	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000519540	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-intron	ENST00000519540	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000519540	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522941	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522941	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522941	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-3CDS	ENST00000522941	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-intron	ENST00000522941	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
5UTR-5UTR	ENST00000522941	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
intron-3CDS	ENST00000518879	ENST00000334049		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
intron-3CDS	ENST00000518879	ENST00000535121		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
intron-3CDS	ENST00000518879	ENST00000269162		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
intron-3CDS	ENST00000518879	ENST00000423027		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
intron-intron	ENST00000518879	ENST00000590972		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
intron-5UTR	ENST00000518879	ENST00000602628		TCGA	LD	COAD	TCGA-DM-A1D6-01A	FAM49B	chr8	130883621	-	GNAL	chr18	11862394	+
In-frame	ENST00000339561	ENST00000371460		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000339561	ENST00000371459		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000339561	ENST00000371461		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000339561	ENST00000306867		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000339561	ENST00000371458		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000339561	ENST00000459689		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000185206	ENST00000371460		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000185206	ENST00000371459		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000185206	ENST00000371461		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000185206	ENST00000306867		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000185206	ENST00000371458		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000185206	ENST00000459689		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000544153	ENST00000371460		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000544153	ENST00000371459		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000544153	ENST00000371461		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
In-frame	ENST00000544153	ENST00000306867		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000544153	ENST00000371458		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000544153	ENST00000459689		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486570	ENST00000371460		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486570	ENST00000371459		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486570	ENST00000371461		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486570	ENST00000306867		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
intron-intron	ENST00000486570	ENST00000371458		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
intron-intron	ENST00000486570	ENST00000459689		TCGA	LD	COAD	TCGA-DM-A1D7-01A	CLIC5	chr6	45916993	-	SUPT3H	chr6	45073743	-
5CDS-5UTR	ENST00000359947	ENST00000414809		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000359947	ENST00000372359		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000359947	ENST00000498139		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000359947	ENST00000479128		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000359947	ENST00000472435		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000359947	ENST00000372354		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-intron	ENST00000359947	ENST00000438616		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000438120	ENST00000414809		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000438120	ENST00000372359		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000438120	ENST00000498139		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000438120	ENST00000479128		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000438120	ENST00000472435		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000438120	ENST00000372354		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-intron	ENST00000438120	ENST00000438616		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372413	ENST00000414809		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372413	ENST00000372359		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372413	ENST00000498139		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372413	ENST00000479128		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372413	ENST00000472435		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372413	ENST00000372354		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-intron	ENST00000372413	ENST00000438616		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372414	ENST00000414809		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372414	ENST00000372359		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372414	ENST00000498139		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372414	ENST00000479128		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372414	ENST00000472435		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000372414	ENST00000372354		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-intron	ENST00000372414	ENST00000438616		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000422171	ENST00000414809		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000422171	ENST00000372359		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000422171	ENST00000498139		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000422171	ENST00000479128		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000422171	ENST00000472435		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000422171	ENST00000372354		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-intron	ENST00000422171	ENST00000438616		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-5UTR	ENST00000496447	ENST00000414809		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-5UTR	ENST00000496447	ENST00000372359		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-5UTR	ENST00000496447	ENST00000498139		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-5UTR	ENST00000496447	ENST00000479128		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-5UTR	ENST00000496447	ENST00000472435		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-5UTR	ENST00000496447	ENST00000372354		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
intron-intron	ENST00000496447	ENST00000438616		TCGA	LD	COAD	TCGA-DM-A1D8-01A	PTPRF	chr1	44058272	+	ARTN	chr1	44401327	+
5CDS-5UTR	ENST00000354725	ENST00000000233		TCGA	LD	COAD	TCGA-DM-A1D8-01A	SND1	chr7	127334962	+	ARF5	chr7	127228458	+
5CDS-5UTR	ENST00000354725	ENST00000467281		TCGA	LD	COAD	TCGA-DM-A1D8-01A	SND1	chr7	127334962	+	ARF5	chr7	127228458	+
intron-5UTR	ENST00000467238	ENST00000000233		TCGA	LD	COAD	TCGA-DM-A1D8-01A	SND1	chr7	127334962	+	ARF5	chr7	127228458	+
intron-5UTR	ENST00000467238	ENST00000467281		TCGA	LD	COAD	TCGA-DM-A1D8-01A	SND1	chr7	127334962	+	ARF5	chr7	127228458	+
5CDS-5UTR	ENST00000344836	ENST00000564869		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
5CDS-intron	ENST00000344836	ENST00000333050		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
intron-5UTR	ENST00000381886	ENST00000564869		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
intron-intron	ENST00000381886	ENST00000333050		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
intron-5UTR	ENST00000535863	ENST00000564869		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
intron-intron	ENST00000535863	ENST00000333050		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
intron-5UTR	ENST00000566224	ENST00000564869		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
intron-intron	ENST00000566224	ENST00000333050		TCGA	LD	COAD	TCGA-DM-A1D8-01A	USP7	chr16	9057064	-	TMEM186	chr16	8875301	-
5CDS-5UTR	ENST00000321442	ENST00000359546		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-intron	ENST00000321442	ENST00000506642		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000321442	ENST00000393745		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000321442	ENST00000512824		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000321442	ENST00000515094		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
intron-5UTR	ENST00000515791	ENST00000359546		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
intron-intron	ENST00000515791	ENST00000506642		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
intron-5UTR	ENST00000515791	ENST00000393745		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
intron-5UTR	ENST00000515791	ENST00000512824		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
intron-5UTR	ENST00000515791	ENST00000515094		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000502393	ENST00000359546		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-intron	ENST00000502393	ENST00000506642		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000502393	ENST00000393745		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000502393	ENST00000512824		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5CDS-5UTR	ENST00000502393	ENST00000515094		TCGA	LD	COAD	TCGA-DM-A1DA-01A	SFXN1	chr5	174919270	+	CPLX2	chr5	175305655	+
5UTR-3CDS	ENST00000455485	ENST00000215754		TCGA	LD	COAD	TCGA-DM-A1HA-01A	GUSBP11	chr22	24029018	-	MIF	chr22	24236959	+
5UTR-3CDS	ENST00000261716	ENST00000394859		TCGA	LD	COAD	TCGA-DM-A1HA-01A	TAOK1	chr17	27718042	+	ANKRD13B	chr17	27934760	+
5UTR-3CDS	ENST00000536202	ENST00000394859		TCGA	LD	COAD	TCGA-DM-A1HA-01A	TAOK1	chr17	27718042	+	ANKRD13B	chr17	27934760	+
In-frame	ENST00000297641	ENST00000380647		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
In-frame	ENST00000297641	ENST00000262360		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
In-frame	ENST00000297641	ENST00000425824		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
5CDS-intron	ENST00000297641	ENST00000380641		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
5CDS-intron	ENST00000297641	ENST00000484374		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
In-frame	ENST00000380701	ENST00000380647		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
In-frame	ENST00000380701	ENST00000262360		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
In-frame	ENST00000380701	ENST00000425824		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
5CDS-intron	ENST00000380701	ENST00000380641		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
5CDS-intron	ENST00000380701	ENST00000484374		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-3CDS	ENST00000535968	ENST00000380647		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-3CDS	ENST00000535968	ENST00000262360		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-3CDS	ENST00000535968	ENST00000425824		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-intron	ENST00000535968	ENST00000380641		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-intron	ENST00000535968	ENST00000484374		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-3CDS	ENST00000486641	ENST00000380647		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-3CDS	ENST00000486641	ENST00000262360		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-3CDS	ENST00000486641	ENST00000425824		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-intron	ENST00000486641	ENST00000380641		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
intron-intron	ENST00000486641	ENST00000484374		TCGA	LD	COAD	TCGA-DM-A28A-01A	CCDC171	chr9	15784692	+	CNTLN	chr9	17457522	+
In-frame	ENST00000343289	ENST00000260746		TCGA	LD	COAD	TCGA-DM-A28A-01A	NT5C2	chr10	104899163	-	ARL3	chr10	104449700	-
Frame-shit	ENST00000404739	ENST00000260746		TCGA	LD	COAD	TCGA-DM-A28A-01A	NT5C2	chr10	104899163	-	ARL3	chr10	104449700	-
5UTR-3CDS	ENST00000369857	ENST00000260746		TCGA	LD	COAD	TCGA-DM-A28A-01A	NT5C2	chr10	104899163	-	ARL3	chr10	104449700	-
Frame-shit	ENST00000423468	ENST00000260746		TCGA	LD	COAD	TCGA-DM-A28A-01A	NT5C2	chr10	104899163	-	ARL3	chr10	104449700	-
intron-3CDS	ENST00000470299	ENST00000260746		TCGA	LD	COAD	TCGA-DM-A28A-01A	NT5C2	chr10	104899163	-	ARL3	chr10	104449700	-
5UTR-3CDS	ENST00000322067	ENST00000358951		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-intron	ENST00000322067	ENST00000462353		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-3CDS	ENST00000469520	ENST00000358951		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-intron	ENST00000469520	ENST00000462353		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-3CDS	ENST00000354807	ENST00000358951		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-intron	ENST00000354807	ENST00000462353		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
intron-3CDS	ENST00000544404	ENST00000358951		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
intron-intron	ENST00000544404	ENST00000462353		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-3CDS	ENST00000414869	ENST00000358951		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-intron	ENST00000414869	ENST00000462353		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-3CDS	ENST00000482136	ENST00000358951		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5UTR-intron	ENST00000482136	ENST00000462353		TCGA	LD	COAD	TCGA-DM-A28F-01A	BPNT1	chr1	220263028	-	RAB3GAP2	chr1	220327399	-
5CDS-intron	ENST00000382172	ENST00000302979		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
5CDS-intron	ENST00000382172	ENST00000399697		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
5CDS-intron	ENST00000382172	ENST00000465887		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
5CDS-intron	ENST00000382172	ENST00000399696		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
intron-intron	ENST00000469167	ENST00000302979		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
intron-intron	ENST00000469167	ENST00000399697		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
intron-intron	ENST00000469167	ENST00000465887		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
intron-intron	ENST00000469167	ENST00000399696		TCGA	LD	COAD	TCGA-DM-A28F-01A	MIPEP	chr13	24380089	-	POLR1D	chr13	28312844	+
Frame-shit	ENST00000352251	ENST00000382172		TCGA	LD	COAD	TCGA-DM-A28F-01A	PROSER1	chr13	39603418	-	MIPEP	chr13	24444334	-
5CDS-intron	ENST00000352251	ENST00000469167		TCGA	LD	COAD	TCGA-DM-A28F-01A	PROSER1	chr13	39603418	-	MIPEP	chr13	24444334	-
Frame-shit	ENST00000350125	ENST00000382172		TCGA	LD	COAD	TCGA-DM-A28F-01A	PROSER1	chr13	39603418	-	MIPEP	chr13	24444334	-
5CDS-intron	ENST00000350125	ENST00000469167		TCGA	LD	COAD	TCGA-DM-A28F-01A	PROSER1	chr13	39603418	-	MIPEP	chr13	24444334	-
intron-3CDS	ENST00000484434	ENST00000382172		TCGA	LD	COAD	TCGA-DM-A28F-01A	PROSER1	chr13	39603418	-	MIPEP	chr13	24444334	-
intron-intron	ENST00000484434	ENST00000469167		TCGA	LD	COAD	TCGA-DM-A28F-01A	PROSER1	chr13	39603418	-	MIPEP	chr13	24444334	-
5UTR-intron	ENST00000527073	ENST00000360421		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5UTR-intron	ENST00000527073	ENST00000377871		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5UTR-intron	ENST00000527073	ENST00000458333		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5UTR-intron	ENST00000527073	ENST00000421062		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5UTR-intron	ENST00000527073	ENST00000537349		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000525631	ENST00000360421		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000525631	ENST00000377871		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000525631	ENST00000458333		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000525631	ENST00000421062		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000525631	ENST00000537349		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000307366	ENST00000360421		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000307366	ENST00000377871		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000307366	ENST00000458333		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000307366	ENST00000421062		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000307366	ENST00000537349		TCGA	LD	COAD	TCGA-DM-A28F-01A	TMEM223	chr11	62559151	-	SLC22A6	chr11	62703958	-
intron-3CDS	ENST00000431530	ENST00000366956		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000431530	ENST00000543945		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-intron	ENST00000431530	ENST00000491277		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000380808	ENST00000366956		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000380808	ENST00000543945		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-intron	ENST00000380808	ENST00000491277		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000542829	ENST00000366956		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000542829	ENST00000543945		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-intron	ENST00000542829	ENST00000491277		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000400542	ENST00000366956		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-3CDS	ENST00000400542	ENST00000543945		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
intron-intron	ENST00000400542	ENST00000491277		TCGA	LD	COAD	TCGA-F4-6459-01A	MTUS2	chr13	29394748	+	PTPN14	chr1	214576296	-
In-frame	ENST00000503238	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000503238	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000503238	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000503238	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000503238	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000503238	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000358350	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000358350	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000358350	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000358350	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000358350	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000358350	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000537810	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000537810	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000537810	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000537810	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000537810	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000537810	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5UTR-3CDS	ENST00000264319	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5UTR-3CDS	ENST00000264319	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5UTR-3CDS	ENST00000264319	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5UTR-3CDS	ENST00000264319	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5UTR-intron	ENST00000264319	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5UTR-intron	ENST00000264319	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000507711	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000507711	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000507711	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
In-frame	ENST00000507711	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000507711	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
5CDS-intron	ENST00000507711	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000514783	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000514783	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000514783	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000514783	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-intron	ENST00000514783	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-intron	ENST00000514783	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000507873	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000507873	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000507873	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000507873	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-intron	ENST00000507873	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-intron	ENST00000507873	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000506685	ENST00000273857		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000506685	ENST00000508498		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000506685	ENST00000502252		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-3CDS	ENST00000506685	ENST00000505909		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-intron	ENST00000506685	ENST00000504584		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
intron-intron	ENST00000506685	ENST00000515827		TCGA	LD	COAD	TCGA-F4-6461-01A	FRYL	chr4	48572844	-	CORIN	chr4	47628538	-
Frame-shit	ENST00000361205	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000361205	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000361205	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000361205	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399848	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399848	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399848	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399848	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000359446	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000359446	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000359446	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000359446	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000587757	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000587757	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000587757	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000587757	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000585931	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000585931	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000585931	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000585931	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000586765	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000586765	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000586765	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000586765	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000590308	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000590308	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000590308	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000590308	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000592991	ENST00000315677		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000592991	ENST00000581527		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000592991	ENST00000400147		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000400149		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000400155		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000400150		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000584874		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000534970		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000539435		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000581699		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000400145		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000515196		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000592991	ENST00000478161		TCGA	LD	COAD	TCGA-F4-6461-01A	LDLRAD4	chr18	13621270	+	DLGAP1	chr18	3582246	-
In-frame	ENST00000374479	ENST00000450454		TCGA	LD	COAD	TCGA-F4-6570-01A	FUCA1	chr1	24180850	-	TCEA3	chr1	23744502	-
In-frame	ENST00000374479	ENST00000374601		TCGA	LD	COAD	TCGA-F4-6570-01A	FUCA1	chr1	24180850	-	TCEA3	chr1	23744502	-
In-frame	ENST00000374479	ENST00000461794		TCGA	LD	COAD	TCGA-F4-6570-01A	FUCA1	chr1	24180850	-	TCEA3	chr1	23744502	-
Frame-shit	ENST00000254108	ENST00000247470		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
5CDS-intron	ENST00000254108	ENST00000350605		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
Frame-shit	ENST00000380244	ENST00000247470		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
5CDS-intron	ENST00000380244	ENST00000350605		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
Frame-shit	ENST00000568685	ENST00000247470		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
5CDS-intron	ENST00000568685	ENST00000350605		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
intron-3CDS	ENST00000474990	ENST00000247470		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
intron-intron	ENST00000474990	ENST00000350605		TCGA	LD	COAD	TCGA-F4-6809-01A	FUS	chr16	31193743	+	PYCARD	chr16	31213524	-
5CDS-intron	ENST00000354570	ENST00000434900		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000520708		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000518759		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000360422		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000330432		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000428397		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000452687		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000229768		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000524163		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000419506		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000414028		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000435918		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000337049		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-3UTR	ENST00000354570	ENST00000523520		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000522555		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000354570	ENST00000522236		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000434900		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000520708		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000518759		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000360422		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000330432		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000428397		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000452687		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000229768		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000524163		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000419506		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000414028		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000435918		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000337049		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-3UTR	ENST00000454590	ENST00000523520		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000522555		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000454590	ENST00000522236		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000434900		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000520708		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000518759		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000360422		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000330432		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000428397		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000452687		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000229768		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000524163		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000419506		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000414028		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000435918		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000337049		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-3UTR	ENST00000544465	ENST00000523520		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000522555		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000544465	ENST00000522236		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000434900		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000520708		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000518759		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000360422		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000330432		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000428397		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000452687		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000229768		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000524163		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000419506		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000414028		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000435918		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000337049		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-3UTR	ENST00000438100	ENST00000523520		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000522555		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5CDS-intron	ENST00000438100	ENST00000522236		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000434900		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000520708		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000518759		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000360422		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000330432		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000428397		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000452687		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000229768		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000524163		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000419506		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000414028		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000435918		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000337049		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-3UTR	ENST00000432797	ENST00000523520		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000522555		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
5UTR-intron	ENST00000432797	ENST00000522236		TCGA	LD	COAD	TCGA-F4-6854-01A	MAP7	chr6	136732758	-	OPRM1	chr6	154394650	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	COAD	TCGA-G4-6294-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000244289	ENST00000601181		TCGA	LD	COAD	TCGA-G4-6295-01A	LIPE	chr19	42927571	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000602000	ENST00000601181		TCGA	LD	COAD	TCGA-G4-6295-01A	LIPE	chr19	42927571	-	CXCL17	chr19	42938008	-
5CDS-intron	ENST00000262738	ENST00000382363		TCGA	LD	COAD	TCGA-G4-6298-01A	CELSR1	chr22	46929524	-	RNF215	chr22	30784268	-
5CDS-intron	ENST00000395964	ENST00000382363		TCGA	LD	COAD	TCGA-G4-6298-01A	CELSR1	chr22	46929524	-	RNF215	chr22	30784268	-
5UTR-intron	ENST00000497509	ENST00000382363		TCGA	LD	COAD	TCGA-G4-6298-01A	CELSR1	chr22	46929524	-	RNF215	chr22	30784268	-
intron-intron	ENST00000443149	ENST00000510407		TCGA	LD	COAD	TCGA-G4-6298-01A	KIAA2026	chr9	5988345	-	INSL6	chr9	5164265	-
intron-intron	ENST00000443149	ENST00000381641		TCGA	LD	COAD	TCGA-G4-6298-01A	KIAA2026	chr9	5988345	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000399933	ENST00000510407		TCGA	LD	COAD	TCGA-G4-6298-01A	KIAA2026	chr9	5988345	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000399933	ENST00000381641		TCGA	LD	COAD	TCGA-G4-6298-01A	KIAA2026	chr9	5988345	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381461	ENST00000510407		TCGA	LD	COAD	TCGA-G4-6298-01A	KIAA2026	chr9	5988345	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381461	ENST00000381641		TCGA	LD	COAD	TCGA-G4-6298-01A	KIAA2026	chr9	5988345	-	INSL6	chr9	5164265	-
5CDS-5UTR	ENST00000383440	ENST00000536353		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-5UTR	ENST00000383440	ENST00000357775		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-intron	ENST00000383440	ENST00000306084		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-intron	ENST00000383440	ENST00000426718		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-5UTR	ENST00000262126	ENST00000536353		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-5UTR	ENST00000262126	ENST00000357775		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-intron	ENST00000262126	ENST00000306084		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-intron	ENST00000262126	ENST00000426718		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
intron-5UTR	ENST00000540578	ENST00000536353		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
intron-5UTR	ENST00000540578	ENST00000357775		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
intron-intron	ENST00000540578	ENST00000306084		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
intron-intron	ENST00000540578	ENST00000426718		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-5UTR	ENST00000400020	ENST00000536353		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-5UTR	ENST00000400020	ENST00000357775		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-intron	ENST00000400020	ENST00000306084		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
5CDS-intron	ENST00000400020	ENST00000426718		TCGA	LD	COAD	TCGA-G4-6299-01A	ANKRD12	chr18	9275665	+	TXNDC2	chr18	9885959	+
Frame-shit	ENST00000315266	ENST00000261783		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
5CDS-intron	ENST00000315266	ENST00000556491		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
Frame-shit	ENST00000478722	ENST00000261783		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
5CDS-intron	ENST00000478722	ENST00000556491		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
Frame-shit	ENST00000459628	ENST00000261783		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
5CDS-intron	ENST00000459628	ENST00000556491		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
Frame-shit	ENST00000543237	ENST00000261783		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
5CDS-intron	ENST00000543237	ENST00000556491		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
Frame-shit	ENST00000305960	ENST00000261783		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
5CDS-intron	ENST00000305960	ENST00000556491		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
3UTR-3CDS	ENST00000544752	ENST00000261783		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
3UTR-intron	ENST00000544752	ENST00000556491		TCGA	LD	COAD	TCGA-G4-6299-01A	GPHN	chr14	67525503	+	ARG2	chr14	68113638	+
5UTR-intron	ENST00000548446	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000548446	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000548446	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000548446	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000548446	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000420353	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000420353	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000420353	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000420353	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000420353	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000415113	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000415113	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000415113	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000415113	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000415113	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000456903	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000456903	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000456903	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000456903	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000456903	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000548118	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000548118	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000548118	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000548118	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000548118	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000591397	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000591397	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000591397	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000591397	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
5UTR-intron	ENST00000591397	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000328463	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000328463	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000328463	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000328463	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000328463	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000550241		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000602871		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000394349		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000549164		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-intron	ENST00000546661	ENST00000338662		TCGA	LD	COAD	TCGA-G4-6304-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54063732	-
intron-3CDS	ENST00000523376	ENST00000379554		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000523376	ENST00000424273		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000523376	ENST00000379556		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000523376	ENST00000528567		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000523376	ENST00000525218		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000523376	ENST00000530161		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-intron	ENST00000523376	ENST00000447214		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-3CDS	ENST00000324229	ENST00000379554		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000324229	ENST00000424273		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000324229	ENST00000379556		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000324229	ENST00000528567		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000324229	ENST00000525218		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-5UTR	ENST00000324229	ENST00000530161		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
intron-intron	ENST00000324229	ENST00000447214		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-3CDS	ENST00000533448	ENST00000379554		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000424273		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000379556		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000528567		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000525218		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000530161		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
3UTR-intron	ENST00000533448	ENST00000447214		TCGA	LD	COAD	TCGA-G4-6306-01A	CALCB	chr11	15102507	+	INSC	chr11	15170676	+
Frame-shit	ENST00000263915	ENST00000373635		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
Frame-shit	ENST00000263915	ENST00000308696		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
Frame-shit	ENST00000263915	ENST00000409643		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
5CDS-intron	ENST00000263915	ENST00000488354		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
Frame-shit	ENST00000543549	ENST00000373635		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
Frame-shit	ENST00000543549	ENST00000308696		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
Frame-shit	ENST00000543549	ENST00000409643		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
5CDS-intron	ENST00000543549	ENST00000488354		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
intron-3CDS	ENST00000497306	ENST00000373635		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
intron-3CDS	ENST00000497306	ENST00000308696		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
intron-3CDS	ENST00000497306	ENST00000409643		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
intron-intron	ENST00000497306	ENST00000488354		TCGA	LD	COAD	TCGA-G4-6307-01A	GRB14	chr2	165404170	-	PSMD1	chr2	232018278	+
5UTR-3CDS	ENST00000479650	ENST00000298585		TCGA	LD	COAD	TCGA-G4-6309-01A	DPH7	chr9	140473077	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000479650	ENST00000471957		TCGA	LD	COAD	TCGA-G4-6309-01A	DPH7	chr9	140473077	-	ZMYND19	chr9	140483170	-
In-frame	ENST00000277540	ENST00000298585		TCGA	LD	COAD	TCGA-G4-6309-01A	DPH7	chr9	140473077	-	ZMYND19	chr9	140483170	-
5CDS-5UTR	ENST00000277540	ENST00000471957		TCGA	LD	COAD	TCGA-G4-6309-01A	DPH7	chr9	140473077	-	ZMYND19	chr9	140483170	-
5UTR-3CDS	ENST00000289431	ENST00000023939		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-3CDS	ENST00000289431	ENST00000395881		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-3CDS	ENST00000289431	ENST00000357348		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-intron	ENST00000289431	ENST00000484084		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-intron	ENST00000289431	ENST00000435342		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
intron-3CDS	ENST00000422556	ENST00000023939		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
intron-3CDS	ENST00000422556	ENST00000395881		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
intron-3CDS	ENST00000422556	ENST00000357348		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
intron-intron	ENST00000422556	ENST00000484084		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
intron-intron	ENST00000422556	ENST00000435342		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-3CDS	ENST00000543716	ENST00000023939		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-3CDS	ENST00000543716	ENST00000395881		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-3CDS	ENST00000543716	ENST00000357348		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-intron	ENST00000543716	ENST00000484084		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-intron	ENST00000543716	ENST00000435342		TCGA	LD	COAD	TCGA-G4-6315-01A	SPATA2	chr20	48531917	-	RTFDC1	chr20	55088371	+
5UTR-intron	ENST00000393223	ENST00000236826		TCGA	LD	COAD	TCGA-G4-6317-01A	MTMR2	chr11	95647406	-	MMP8	chr11	102595734	-
intron-intron	ENST00000346299	ENST00000236826		TCGA	LD	COAD	TCGA-G4-6317-01A	MTMR2	chr11	95647406	-	MMP8	chr11	102595734	-
5UTR-intron	ENST00000409459	ENST00000236826		TCGA	LD	COAD	TCGA-G4-6317-01A	MTMR2	chr11	95647406	-	MMP8	chr11	102595734	-
5UTR-intron	ENST00000352297	ENST00000236826		TCGA	LD	COAD	TCGA-G4-6317-01A	MTMR2	chr11	95647406	-	MMP8	chr11	102595734	-
intron-intron	ENST00000484818	ENST00000236826		TCGA	LD	COAD	TCGA-G4-6317-01A	MTMR2	chr11	95647406	-	MMP8	chr11	102595734	-
5CDS-intron	ENST00000292147	ENST00000389341		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000342301		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000533720		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000526816		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000529067		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000560558		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000560398		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000529952		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000292147	ENST00000524801		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000389341		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000342301		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000533720		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000526816		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000529067		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000560558		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000560398		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000529952		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5CDS-intron	ENST00000600651	ENST00000524801		TCGA	LD	COAD	TCGA-G4-6322-01A	ETHE1	chr19	44031249	-	POU2F2	chr19	42600395	-
5UTR-3CDS	ENST00000367328	ENST00000239374		TCGA	LD	COAD	TCGA-G4-6322-01A	PLEKHG1	chr6	150971922	+	CCDC170	chr6	151857453	+
5UTR-3CDS	ENST00000367328	ENST00000367290		TCGA	LD	COAD	TCGA-G4-6322-01A	PLEKHG1	chr6	150971922	+	CCDC170	chr6	151857453	+
5UTR-3UTR	ENST00000367328	ENST00000544131		TCGA	LD	COAD	TCGA-G4-6322-01A	PLEKHG1	chr6	150971922	+	CCDC170	chr6	151857453	+
intron-3CDS	ENST00000358517	ENST00000239374		TCGA	LD	COAD	TCGA-G4-6322-01A	PLEKHG1	chr6	150971922	+	CCDC170	chr6	151857453	+
intron-3CDS	ENST00000358517	ENST00000367290		TCGA	LD	COAD	TCGA-G4-6322-01A	PLEKHG1	chr6	150971922	+	CCDC170	chr6	151857453	+
intron-3UTR	ENST00000358517	ENST00000544131		TCGA	LD	COAD	TCGA-G4-6322-01A	PLEKHG1	chr6	150971922	+	CCDC170	chr6	151857453	+
Frame-shit	ENST00000373635	ENST00000324695		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
Frame-shit	ENST00000373635	ENST00000433712		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000373635	ENST00000355722		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000373635	ENST00000409625		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000373635	ENST00000466594		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
Frame-shit	ENST00000308696	ENST00000324695		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
Frame-shit	ENST00000308696	ENST00000433712		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000308696	ENST00000355722		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000308696	ENST00000409625		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000308696	ENST00000466594		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
Frame-shit	ENST00000409643	ENST00000324695		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
Frame-shit	ENST00000409643	ENST00000433712		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000409643	ENST00000355722		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000409643	ENST00000409625		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
5CDS-intron	ENST00000409643	ENST00000466594		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
3UTR-3CDS	ENST00000488354	ENST00000324695		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
3UTR-3CDS	ENST00000488354	ENST00000433712		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
3UTR-intron	ENST00000488354	ENST00000355722		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
3UTR-intron	ENST00000488354	ENST00000409625		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
3UTR-intron	ENST00000488354	ENST00000466594		TCGA	LD	COAD	TCGA-G4-6322-01A	PSMD1	chr2	231951895	+	TRPM8	chr2	234888832	+
In-frame	ENST00000475381	ENST00000329251		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
Frame-shit	ENST00000475381	ENST00000378019		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5CDS-intron	ENST00000475381	ENST00000532986		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
In-frame	ENST00000273512	ENST00000329251		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
Frame-shit	ENST00000273512	ENST00000378019		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5CDS-intron	ENST00000273512	ENST00000532986		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
In-frame	ENST00000538775	ENST00000329251		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
Frame-shit	ENST00000538775	ENST00000378019		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5CDS-intron	ENST00000538775	ENST00000532986		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5UTR-3CDS	ENST00000543711	ENST00000329251		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5UTR-3CDS	ENST00000543711	ENST00000378019		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5UTR-intron	ENST00000543711	ENST00000532986		TCGA	LD	COAD	TCGA-G4-6323-01A	NCEH1	chr3	172428637	-	EEF1G	chr11	62327309	-
5UTR-3CDS	ENST00000400259	ENST00000290122		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000400259	ENST00000374663		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000344548	ENST00000290122		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000344548	ENST00000374663		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000315554	ENST00000290122		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000315554	ENST00000374663		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
3UTR-3CDS	ENST00000498236	ENST00000290122		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
3UTR-3CDS	ENST00000498236	ENST00000374663		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000421089	ENST00000290122		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
5UTR-3CDS	ENST00000421089	ENST00000374663		TCGA	LD	COAD	TCGA-G4-6588-01A	CDC42	chr1	22379235	+	CELA3A	chr1	22331940	+
Frame-shit	ENST00000354655	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354655	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354655	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354655	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354655	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354655	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
5CDS-intron	ENST00000354655	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-3CDS	ENST00000479936	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-3CDS	ENST00000479936	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-3CDS	ENST00000479936	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-3CDS	ENST00000479936	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-3CDS	ENST00000479936	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-3CDS	ENST00000479936	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
3UTR-intron	ENST00000479936	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000393081	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000393081	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000393081	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000393081	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000393081	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000393081	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
5CDS-intron	ENST00000393081	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000433418	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000433418	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000433418	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000433418	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000433418	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000433418	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
5CDS-intron	ENST00000433418	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000356116	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000356116	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000356116	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000356116	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000356116	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000356116	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
5CDS-intron	ENST00000356116	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354273	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354273	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354273	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354273	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354273	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
Frame-shit	ENST00000354273	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
5CDS-intron	ENST00000354273	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-3CDS	ENST00000369410	ENST00000369043		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-3CDS	ENST00000369410	ENST00000535655		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-3CDS	ENST00000369410	ENST00000224652		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-3CDS	ENST00000369410	ENST00000369040		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-3CDS	ENST00000369410	ENST00000540606		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-3CDS	ENST00000369410	ENST00000543447		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
intron-intron	ENST00000369410	ENST00000481784		TCGA	LD	COAD	TCGA-G4-6625-01A	ACSL5	chr10	114158767	+	ATE1	chr10	123549804	-
5UTR-3CDS	ENST00000348579	ENST00000290949		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
5UTR-3CDS	ENST00000348579	ENST00000540149		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
5UTR-5UTR	ENST00000348579	ENST00000602876		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
5UTR-intron	ENST00000348579	ENST00000567694		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
intron-3CDS	ENST00000566075	ENST00000290949		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
intron-3CDS	ENST00000566075	ENST00000540149		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
intron-5UTR	ENST00000566075	ENST00000602876		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
intron-intron	ENST00000566075	ENST00000567694		TCGA	LD	COAD	TCGA-G4-6625-01A	ZDHHC1	chr16	67450074	-	ATP6V0D1	chr16	67487618	-
5UTR-5UTR	ENST00000541477	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000541477	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000541477	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000229277	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000229277	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000229277	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000538763	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000538763	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000538763	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000544774	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000544774	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000544774	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000545045	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000545045	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000545045	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-5UTR	ENST00000535366	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-5UTR	ENST00000535366	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-5UTR	ENST00000535366	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-5UTR	ENST00000534977	ENST00000540656		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-5UTR	ENST00000534977	ENST00000320591		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-5UTR	ENST00000534977	ENST00000534837		TCGA	LD	COAD	TCGA-G4-6626-01A	ENO2	chr12	7023823	+	PIANP	chr12	6807270	-
intron-3CDS	ENST00000421184	ENST00000263346		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000563406		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000263347		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000393092	ENST00000263346		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000563406		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000263347		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000261615	ENST00000263346		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000563406		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000263347		TCGA	LD	COAD	TCGA-G4-6627-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000309364	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000309364	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000359180	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000359180	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000317589	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000317589	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000355397	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000355397	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000429027	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000429027	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5UTR-intron	ENST00000539256	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5UTR-intron	ENST00000539256	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000299275	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000299275	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000538714	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000538714	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
intron-intron	ENST00000543806	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
intron-intron	ENST00000543806	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
intron-intron	ENST00000424268	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
intron-intron	ENST00000424268	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000540972	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
5CDS-intron	ENST00000540972	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
intron-intron	ENST00000510738	ENST00000535390		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
intron-intron	ENST00000510738	ENST00000228837		TCGA	LD	COAD	TCGA-NH-A50U-01A	PLEKHA5	chr12	19283064	+	FGF6	chr12	4554439	-
Frame-shit	ENST00000438423	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000438423	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000267811	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000267811	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000452095	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000452095	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000333725	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000333725	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000557843	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
Frame-shit	ENST00000557843	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000560764	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000560764	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000543579	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000543579	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000537840	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000537840	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000343827	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000343827	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000559710	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000559710	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000559703	ENST00000397609		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000559703	ENST00000491535		TCGA	LD	COAD	TCGA-NH-A50U-01A	TCF12	chr15	57384089	+	FAM98B	chr15	38756233	+
intron-3CDS	ENST00000356333	ENST00000390242		TCGA	LD	COAD	TCGA-NH-A6GB-01A	FAM156A	chrX	52956884	-	IGKJ1	chr2	89161432	-
intron-3CDS	ENST00000316310	ENST00000390242		TCGA	LD	COAD	TCGA-NH-A6GB-01A	FAM156A	chrX	52956884	-	IGKJ1	chr2	89161432	-
intron-3CDS	ENST00000330025	ENST00000390242		TCGA	LD	COAD	TCGA-NH-A6GB-01A	FAM156A	chrX	52956884	-	IGKJ1	chr2	89161432	-
intron-3CDS	ENST00000512364	ENST00000390242		TCGA	LD	COAD	TCGA-NH-A6GB-01A	FAM156A	chrX	52956884	-	IGKJ1	chr2	89161432	-
intron-3CDS	ENST00000414076	ENST00000390242		TCGA	LD	COAD	TCGA-NH-A6GB-01A	FAM156A	chrX	52956884	-	IGKJ1	chr2	89161432	-
intron-3CDS	ENST00000493931	ENST00000390242		TCGA	LD	COAD	TCGA-NH-A6GB-01A	FAM156A	chrX	52956884	-	IGKJ1	chr2	89161432	-
Frame-shit	ENST00000390268	ENST00000390240		TCGA	LD	COAD	TCGA-QG-A5YW-01A	IGKV2D-26	chr2	90025510	+	IGKJ3	chr2	89160765	-
5CDS-5UTR	ENST00000401998	ENST00000441508		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000401998	ENST00000398786		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000361114	ENST00000441508		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000361114	ENST00000398786		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000398761	ENST00000441508		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000398761	ENST00000398786		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000418483	ENST00000441508		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000418483	ENST00000398786		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000398763	ENST00000441508		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000398763	ENST00000398786		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
intron-5UTR	ENST00000604025	ENST00000441508		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
intron-5UTR	ENST00000604025	ENST00000398786		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	MICU1	chr10	74234858	-	C10orf105	chr10	73476099	-
5UTR-3CDS	ENST00000535141	ENST00000358767		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000535141	ENST00000546225		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000535141	ENST00000335894		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000535141	ENST00000360277		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-intron	ENST00000535141	ENST00000512104		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-intron	ENST00000535141	ENST00000560790		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
Frame-shit	ENST00000307897	ENST00000358767		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
Frame-shit	ENST00000307897	ENST00000546225		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
Frame-shit	ENST00000307897	ENST00000335894		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
Frame-shit	ENST00000307897	ENST00000360277		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000307897	ENST00000512104		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000307897	ENST00000560790		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000446801	ENST00000358767		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000446801	ENST00000546225		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000446801	ENST00000335894		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000446801	ENST00000360277		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-intron	ENST00000446801	ENST00000512104		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-intron	ENST00000446801	ENST00000560790		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000565627	ENST00000358767		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000565627	ENST00000546225		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000565627	ENST00000335894		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000565627	ENST00000360277		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-intron	ENST00000565627	ENST00000512104		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
5UTR-intron	ENST00000565627	ENST00000560790		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
3UTR-3CDS	ENST00000565960	ENST00000358767		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
3UTR-3CDS	ENST00000565960	ENST00000546225		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
3UTR-3CDS	ENST00000565960	ENST00000335894		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
3UTR-3CDS	ENST00000565960	ENST00000360277		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
3UTR-intron	ENST00000565960	ENST00000512104		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
3UTR-intron	ENST00000565960	ENST00000560790		TCGA	LD	COAD	TCGA-QG-A5Z1-01A	ZWILCH	chr15	66807982	+	IQCH	chr15	67757465	+
In-frame	ENST00000412460	ENST00000276603		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
Frame-shit	ENST00000412460	ENST00000276602		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
5CDS-intron	ENST00000412460	ENST00000520783		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
In-frame	ENST00000262210	ENST00000276603		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
Frame-shit	ENST00000262210	ENST00000276602		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
5CDS-intron	ENST00000262210	ENST00000520783		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
intron-3CDS	ENST00000521168	ENST00000276603		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
intron-3CDS	ENST00000521168	ENST00000276602		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
intron-intron	ENST00000521168	ENST00000520783		TCGA	LD	COAD	TCGA-RU-A8FL-01A	CSPP1	chr8	68015370	+	TERF1	chr8	73958196	+
5CDS-5UTR	ENST00000338368	ENST00000519846		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000338368	ENST00000518592		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000338368	ENST00000325897		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000338368	ENST00000518858		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-5UTR	ENST00000314191	ENST00000519846		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000314191	ENST00000518592		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000314191	ENST00000325897		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000314191	ENST00000518858		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5UTR-5UTR	ENST00000523565	ENST00000519846		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5UTR-intron	ENST00000523565	ENST00000518592		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5UTR-intron	ENST00000523565	ENST00000325897		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5UTR-intron	ENST00000523565	ENST00000518858		TCGA	LD	COAD	TCGA-RU-A8FL-01A	PRKDC	chr8	48824970	-	CLVS1	chr8	62204877	+
5UTR-5UTR	ENST00000379649	ENST00000419152		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000532400		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000532741		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000317198		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000526838		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000442189		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000528610		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000423316		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000395119		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000529272		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000531621		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-5UTR	ENST00000379649	ENST00000524624		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-intron	ENST00000379649	ENST00000531770		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000419152		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000532400		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000532741		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000317198		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000526838		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000442189		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000528610		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000423316		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000395119		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000529272		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000531621		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-5UTR	ENST00000239878	ENST00000524624		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5CDS-intron	ENST00000239878	ENST00000531770		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000419152		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000532400		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000532741		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000317198		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000526838		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000442189		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000528610		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000423316		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000395119		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000529272		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000531621		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-5UTR	ENST00000379641	ENST00000524624		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
intron-intron	ENST00000379641	ENST00000531770		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	EEF1D	chr8	144669022	-
5UTR-intron	ENST00000379649	ENST00000338910		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	PSPC1	chr13	20251963	-
5UTR-5UTR	ENST00000379649	ENST00000497722		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	PSPC1	chr13	20251963	-
5CDS-intron	ENST00000239878	ENST00000338910		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	PSPC1	chr13	20251963	-
5CDS-5UTR	ENST00000239878	ENST00000497722		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	PSPC1	chr13	20251963	-
intron-intron	ENST00000379641	ENST00000338910		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	PSPC1	chr13	20251963	-
intron-5UTR	ENST00000379641	ENST00000497722		TCGA	LD	COAD	TCGA-RU-A8FL-01A	UFM1	chr13	38924192	+	PSPC1	chr13	20251963	-
5CDS-intron	ENST00000283943	ENST00000482518		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000283943	ENST00000392054		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000283943	ENST00000409462		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000283943	ENST00000392055		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000283943	ENST00000354069		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389045	ENST00000482518		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389045	ENST00000392054		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389045	ENST00000409462		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389045	ENST00000392055		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389045	ENST00000354069		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389044	ENST00000482518		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389044	ENST00000392054		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389044	ENST00000409462		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389044	ENST00000392055		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000389044	ENST00000354069		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000543084	ENST00000482518		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000543084	ENST00000392054		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000543084	ENST00000409462		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000543084	ENST00000392055		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000543084	ENST00000354069		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000409677	ENST00000482518		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000409677	ENST00000392054		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000409677	ENST00000409462		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000409677	ENST00000392055		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
intron-intron	ENST00000409677	ENST00000354069		TCGA	LD	COAD	TCGA-T9-A92H-01A	TRIP12	chr2	230678586	-	PID1	chr2	229890824	-
3UTR-3CDS	ENST00000558401	ENST00000280326		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000558401	ENST00000503026		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000558401	ENST00000515390		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000558401	ENST00000515676		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000558401	ENST00000506600		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000559916	ENST00000280326		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559916	ENST00000503026		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559916	ENST00000515390		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559916	ENST00000515676		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559916	ENST00000506600		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000544417	ENST00000280326		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544417	ENST00000503026		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544417	ENST00000515390		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544417	ENST00000515676		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544417	ENST00000506600		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000559220	ENST00000280326		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559220	ENST00000503026		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559220	ENST00000515390		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559220	ENST00000515676		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
intron-intron	ENST00000559220	ENST00000506600		TCGA	RV	DLBC	TCGA-GS-A9U3-01A	B2M	chr15	45010359	+	CCT5	chr5	10250033	+
5CDS-5UTR	ENST00000255476	ENST00000350148		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
5CDS-5UTR	ENST00000255476	ENST00000379826		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
5CDS-5UTR	ENST00000255476	ENST00000483941		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
5CDS-intron	ENST00000255476	ENST00000399275		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
intron-5UTR	ENST00000472888	ENST00000350148		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
intron-5UTR	ENST00000472888	ENST00000379826		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
intron-5UTR	ENST00000472888	ENST00000483941		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
intron-intron	ENST00000472888	ENST00000399275		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	RFXAP	chr13	37394094	+	SMAD9	chr13	37454012	-
5CDS-5UTR	ENST00000398571	ENST00000402291		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
5CDS-5UTR	ENST00000398571	ENST00000356719		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
5CDS-5UTR	ENST00000398571	ENST00000295031		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
5CDS-intron	ENST00000398571	ENST00000453873		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
5CDS-3UTR	ENST00000398571	ENST00000482513		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
intron-5UTR	ENST00000472689	ENST00000402291		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
intron-5UTR	ENST00000472689	ENST00000356719		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
intron-5UTR	ENST00000472689	ENST00000295031		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
intron-intron	ENST00000472689	ENST00000453873		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
intron-3UTR	ENST00000472689	ENST00000482513		TCGA	RV	DLBC	TCGA-FF-8043-01A	USP34	chr2	61546308	-	KIAA1841	chr2	61295984	+
Frame-shit	ENST00000344111	ENST00000297440		TCGA	RV	DLBC	TCGA-FA-A82F-01A	COX19	chr7	1015064	-	HEATR2	chr7	810108	+
Frame-shit	ENST00000344111	ENST00000313147		TCGA	RV	DLBC	TCGA-FA-A82F-01A	COX19	chr7	1015064	-	HEATR2	chr7	810108	+
5CDS-intron	ENST00000344111	ENST00000438961		TCGA	RV	DLBC	TCGA-FA-A82F-01A	COX19	chr7	1015064	-	HEATR2	chr7	810108	+
5CDS-intron	ENST00000344111	ENST00000403952		TCGA	RV	DLBC	TCGA-FA-A82F-01A	COX19	chr7	1015064	-	HEATR2	chr7	810108	+
5CDS-5UTR	ENST00000300648	ENST00000377795		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	GCN1L1	chr12	120607973	-	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000300648	ENST00000353334		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	GCN1L1	chr12	120607973	-	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000300648	ENST00000524315		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	GCN1L1	chr12	120607973	-	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000300648	ENST00000009530		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	GCN1L1	chr12	120607973	-	CD74	chr5	149792314	-
In-frame	ENST00000265537	ENST00000430069		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
In-frame	ENST00000265537	ENST00000457928		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
In-frame	ENST00000415258	ENST00000430069		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
In-frame	ENST00000415258	ENST00000457928		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
In-frame	ENST00000414984	ENST00000430069		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
In-frame	ENST00000414984	ENST00000457928		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
intron-3CDS	ENST00000467936	ENST00000430069		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
intron-3CDS	ENST00000467936	ENST00000457928		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	LARS2	chr3	45461221	+	TBL1XR1	chr3	176769514	-
5CDS-5UTR	ENST00000264246	ENST00000393845		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000264246	ENST00000295868		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000264246	ENST00000475568		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000264246	ENST00000308346		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000478182	ENST00000393845		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000478182	ENST00000295868		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000478182	ENST00000475568		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000478182	ENST00000308346		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000383668	ENST00000393845		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000383668	ENST00000295868		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000383668	ENST00000475568		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000383668	ENST00000308346		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000383669	ENST00000393845		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-5UTR	ENST00000383669	ENST00000295868		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000383669	ENST00000475568		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5CDS-intron	ENST00000383669	ENST00000308346		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	CD80	chr3	119276476	-	WDR52	chr3	113152516	-
5UTR-3CDS	ENST00000484302	ENST00000580974		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000484302	ENST00000299954		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000484302	ENST00000335257		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000484302	ENST00000581322		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000225648	ENST00000580974		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000225648	ENST00000299954		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000225648	ENST00000335257		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000225648	ENST00000581322		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490419	ENST00000580974		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490419	ENST00000299954		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490419	ENST00000335257		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490419	ENST00000581322		TCGA	RV	DLBC	TCGA-FF-8047-01A	HOXB6	chr17	46681842	-	PITPNC1	chr17	65528918	+
In-frame	ENST00000405201	ENST00000355329		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122097254	-
Frame-shit	ENST00000404621	ENST00000355329		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122097254	-
5UTR-3CDS	ENST00000404121	ENST00000355329		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122097254	-
Frame-shit	ENST00000356219	ENST00000355329		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122097254	-
Frame-shit	ENST00000397355	ENST00000355329		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122097254	-
Frame-shit	ENST00000429285	ENST00000355329		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122097254	-
Frame-shit	ENST00000356948	ENST00000264560		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
Frame-shit	ENST00000356948	ENST00000338448		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
5CDS-intron	ENST00000356948	ENST00000593172		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
intron-3CDS	ENST00000350092	ENST00000264560		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
intron-3CDS	ENST00000350092	ENST00000338448		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
intron-intron	ENST00000350092	ENST00000593172		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
Frame-shit	ENST00000349038	ENST00000264560		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
Frame-shit	ENST00000349038	ENST00000338448		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
5CDS-intron	ENST00000349038	ENST00000593172		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
Frame-shit	ENST00000394601	ENST00000264560		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
Frame-shit	ENST00000394601	ENST00000338448		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
5CDS-intron	ENST00000394601	ENST00000593172		TCGA	RV	DLBC	TCGA-FF-8047-01A	PTBP1	chr19	804438	+	PALM	chr19	726138	+
5CDS-intron	ENST00000291842	ENST00000354185		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	SHKBP1	chr19	41097301	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000600733	ENST00000354185		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	SHKBP1	chr19	41097301	+	DDX21	chr10	70723858	+
intron-intron	ENST00000597649	ENST00000354185		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	SHKBP1	chr19	41097301	+	DDX21	chr10	70723858	+
5CDS-5UTR	ENST00000252577	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000252577	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000252577	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000252577	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000252577	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000252577	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000360315	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000360315	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000360315	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000360315	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000360315	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000360315	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-5UTR	ENST00000537887	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000537887	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000537887	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-5UTR	ENST00000537887	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000537887	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000537887	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000404158	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000404158	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000404158	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000404158	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000404158	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000404158	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000358713	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358713	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358713	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000358713	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358713	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358713	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-5UTR	ENST00000429563	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000429563	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000429563	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-5UTR	ENST00000429563	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000429563	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000429563	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000473184	ENST00000393029		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000473184	ENST00000393028		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000473184	ENST00000345425		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000473184	ENST00000393033		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000473184	ENST00000591349		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000473184	ENST00000586027		TCGA	RV	DLBC	TCGA-RQ-A6JB-01A	GATAD2A	chr19	19576423	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000530927	ENST00000376773		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000530927	ENST00000376772		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000530927	ENST00000376769		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000530927	ENST00000376765		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000530927	ENST00000376763		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000530927	ENST00000376758		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000441553		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000437937		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000446310		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000414618		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000434591		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000452227		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000430828		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000436591		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000448210		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000444994		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000412077		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000422273		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000433942		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000452679		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000417223		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000436833		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000428563		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000449435		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000455350		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000448378		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000429382		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000418211		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000444101		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000430959		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000400658		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000383612		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000400657		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000400656		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000400655		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000400654		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000448550		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000431424		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000414032		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000439463		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000451993		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000450177		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000437171		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000449087		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000431977		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000433662		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000458506		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000530927	ENST00000455887		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000380815	ENST00000376773		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000380815	ENST00000376772		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000380815	ENST00000376769		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000380815	ENST00000376765		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000380815	ENST00000376763		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-5UTR	ENST00000380815	ENST00000376758		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000441553		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000437937		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000446310		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000414618		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000434591		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000452227		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000430828		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000436591		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000448210		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000444994		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000412077		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000422273		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000433942		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000452679		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000417223		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000436833		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000428563		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000449435		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000455350		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000448378		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000429382		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000418211		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000444101		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000430959		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000400658		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000383612		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000400657		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000400656		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000400655		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000400654		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000448550		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000431424		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000414032		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000439463		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000451993		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000450177		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000437171		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000449087		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000431977		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000433662		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000458506		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
5CDS-intron	ENST00000380815	ENST00000455887		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-5UTR	ENST00000467288	ENST00000376773		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-5UTR	ENST00000467288	ENST00000376772		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-5UTR	ENST00000467288	ENST00000376769		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-5UTR	ENST00000467288	ENST00000376765		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-5UTR	ENST00000467288	ENST00000376763		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-5UTR	ENST00000467288	ENST00000376758		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000441553		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000437937		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000446310		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000414618		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000434591		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000452227		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000430828		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000436591		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000448210		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000444994		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000412077		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000422273		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000433942		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000452679		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000417223		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000436833		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000428563		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000449435		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000455350		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000448378		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000429382		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000418211		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000444101		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000430959		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000400658		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000383612		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000400657		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000400656		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000400655		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000400654		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000448550		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000431424		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000414032		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000439463		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000451993		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000450177		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000437171		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000449087		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000431977		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000433662		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000458506		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
intron-intron	ENST00000467288	ENST00000455887		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	GMDS	chr6	1930337	-	PPP1R11	chr6	30036367	+
Frame-shit	ENST00000342016	ENST00000264167		TCGA	RV	DLBC	TCGA-GS-A9TY-01A	CIR1	chr2	175216347	-	AGPS	chr2	178402802	+
Frame-shit	ENST00000342016	ENST00000409888		TCGA	RV	DLBC	TCGA-GS-A9TY-01A	CIR1	chr2	175216347	-	AGPS	chr2	178402802	+
3UTR-3CDS	ENST00000362053	ENST00000264167		TCGA	RV	DLBC	TCGA-GS-A9TY-01A	CIR1	chr2	175216347	-	AGPS	chr2	178402802	+
3UTR-3CDS	ENST00000362053	ENST00000409888		TCGA	RV	DLBC	TCGA-GS-A9TY-01A	CIR1	chr2	175216347	-	AGPS	chr2	178402802	+
In-frame	ENST00000421367	ENST00000280333		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	ERLIN1	chr10	101933965	-	DOCK1	chr10	129201319	+
5CDS-intron	ENST00000421367	ENST00000484400		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	ERLIN1	chr10	101933965	-	DOCK1	chr10	129201319	+
In-frame	ENST00000407654	ENST00000280333		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	ERLIN1	chr10	101933965	-	DOCK1	chr10	129201319	+
5CDS-intron	ENST00000407654	ENST00000484400		TCGA	RV	DLBC	TCGA-VB-A8QN-01A	ERLIN1	chr10	101933965	-	DOCK1	chr10	129201319	+
In-frame	ENST00000331925	ENST00000292174		TCGA	RV	DLBC	TCGA-GR-A4D9-01B	ACTG1	chr17	79476999	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000573283	ENST00000292174		TCGA	RV	DLBC	TCGA-GR-A4D9-01B	ACTG1	chr17	79476999	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000575842	ENST00000292174		TCGA	RV	DLBC	TCGA-GR-A4D9-01B	ACTG1	chr17	79476999	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000575087	ENST00000292174		TCGA	RV	DLBC	TCGA-GR-A4D9-01B	ACTG1	chr17	79476999	-	CXCR5	chr11	118754475	+
5CDS-intron	ENST00000309311	ENST00000264818		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000524462		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000525621		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000529370		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000309311	ENST00000529422		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000264818		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000524462		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000525621		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000529370		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
intron-intron	ENST00000600720	ENST00000529422		TCGA	RV	DLBC	TCGA-GS-A9TT-01A	EEF2	chr19	3976055	-	TYK2	chr19	10491352	-
5CDS-5UTR	ENST00000372009	ENST00000402363		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000537798		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000350030		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000372052		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000372009	ENST00000351223		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-intron	ENST00000372009	ENST00000530073		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000402363		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000537798		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000350030		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000372052		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-5UTR	ENST00000361297	ENST00000351223		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5CDS-intron	ENST00000361297	ENST00000530073		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000402363		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000537798		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000350030		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000372052		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-5UTR	ENST00000477968	ENST00000351223		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
intron-intron	ENST00000477968	ENST00000530073		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	MAST2	chr1	46348067	+	NASP	chr1	46056895	+
5UTR-3CDS	ENST00000368346	ENST00000368879		TCGA	RV	DLBC	TCGA-FF-8043-01A	ASH1L	chr1	155531944	-	ZNF687	chr1	151263191	+
5UTR-3CDS	ENST00000392403	ENST00000368879		TCGA	RV	DLBC	TCGA-FF-8043-01A	ASH1L	chr1	155531944	-	ZNF687	chr1	151263191	+
5UTR-3CDS	ENST00000548830	ENST00000368879		TCGA	RV	DLBC	TCGA-FF-8043-01A	ASH1L	chr1	155531944	-	ZNF687	chr1	151263191	+
In-frame	ENST00000265537	ENST00000292246		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
Frame-shit	ENST00000265537	ENST00000350459		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
In-frame	ENST00000265537	ENST00000396091		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000265537	ENST00000414522		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000265537	ENST00000451430		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-intron	ENST00000265537	ENST00000495772		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
In-frame	ENST00000415258	ENST00000292246		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
Frame-shit	ENST00000415258	ENST00000350459		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
In-frame	ENST00000415258	ENST00000396091		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000415258	ENST00000414522		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000415258	ENST00000451430		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-intron	ENST00000415258	ENST00000495772		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
In-frame	ENST00000414984	ENST00000292246		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
Frame-shit	ENST00000414984	ENST00000350459		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
In-frame	ENST00000414984	ENST00000396091		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000414984	ENST00000414522		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000414984	ENST00000451430		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-intron	ENST00000414984	ENST00000495772		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
3UTR-3CDS	ENST00000467936	ENST00000292246		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
3UTR-3CDS	ENST00000467936	ENST00000350459		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
3UTR-3CDS	ENST00000467936	ENST00000396091		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
3UTR-3UTR	ENST00000467936	ENST00000414522		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
3UTR-3UTR	ENST00000467936	ENST00000451430		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
3UTR-intron	ENST00000467936	ENST00000495772		TCGA	RV	DLBC	TCGA-FA-8693-01A	LARS2	chr3	45542071	+	ANO10	chr3	43408466	-
5CDS-5UTR	ENST00000566228	ENST00000571688		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000413364		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000339430		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000381810		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000570904		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000571459		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000566228	ENST00000572255		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000576036		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000574763		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000571976		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000566228	ENST00000574703		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000571688		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000413364		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000339430		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000381810		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000570904		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000571459		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000323433	ENST00000572255		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000576036		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000574763		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000571976		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000323433	ENST00000574703		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000571688		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000413364		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000339430		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000381810		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000570904		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000571459		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000306030	ENST00000572255		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000576036		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000574763		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000571976		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000306030	ENST00000574703		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000571688		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000413364		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000339430		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000381810		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000570904		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000571459		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-intron	ENST00000568359	ENST00000572255		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000576036		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000574763		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000571976		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
intron-5UTR	ENST00000568359	ENST00000574703		TCGA	RV	DLBC	TCGA-FF-8043-01A	SNX29	chr16	12371893	+	LITAF	chr16	11650591	-
5UTR-3CDS	ENST00000476844	ENST00000355849		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000476844	ENST00000520981		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000476844	ENST00000522578		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-3CDS	ENST00000492590	ENST00000355849		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000492590	ENST00000520981		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000492590	ENST00000522578		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
intron-3CDS	ENST00000466788	ENST00000355849		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
intron-intron	ENST00000466788	ENST00000520981		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
intron-intron	ENST00000466788	ENST00000522578		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-3CDS	ENST00000468189	ENST00000355849		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000468189	ENST00000520981		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000468189	ENST00000522578		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
intron-3CDS	ENST00000341848	ENST00000355849		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
intron-intron	ENST00000341848	ENST00000520981		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
intron-intron	ENST00000341848	ENST00000522578		TCGA	RV	DLBC	TCGA-FF-A7CQ-01A	FHIT	chr3	61027719	-	KHDRBS3	chr8	136554897	+
Frame-shit	ENST00000395443	ENST00000343010		TCGA	RV	DLBC	TCGA-G8-6909-01A	QRICH1	chr3	49069616	-	C3orf62	chr3	49311573	-
Frame-shit	ENST00000357496	ENST00000343010		TCGA	RV	DLBC	TCGA-G8-6909-01A	QRICH1	chr3	49069616	-	C3orf62	chr3	49311573	-
Frame-shit	ENST00000424300	ENST00000343010		TCGA	RV	DLBC	TCGA-G8-6909-01A	QRICH1	chr3	49069616	-	C3orf62	chr3	49311573	-
intron-3CDS	ENST00000479449	ENST00000343010		TCGA	RV	DLBC	TCGA-G8-6909-01A	QRICH1	chr3	49069616	-	C3orf62	chr3	49311573	-
Frame-shit	ENST00000377795	ENST00000292174		TCGA	RV	DLBC	TCGA-FA-A82F-01A	CD74	chr5	149781200	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000353334	ENST00000292174		TCGA	RV	DLBC	TCGA-FA-A82F-01A	CD74	chr5	149781200	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000524315	ENST00000292174		TCGA	RV	DLBC	TCGA-FA-A82F-01A	CD74	chr5	149781200	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000009530	ENST00000292174		TCGA	RV	DLBC	TCGA-FA-A82F-01A	CD74	chr5	149781200	-	CXCR5	chr11	118754475	+
Frame-shit	ENST00000506502	ENST00000394434		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
Frame-shit	ENST00000506502	ENST00000545646		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
Frame-shit	ENST00000506502	ENST00000274562		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
5CDS-intron	ENST00000506502	ENST00000510191		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
5CDS-5UTR	ENST00000506502	ENST00000511505		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
Frame-shit	ENST00000265271	ENST00000394434		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
Frame-shit	ENST00000265271	ENST00000545646		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
Frame-shit	ENST00000265271	ENST00000274562		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
5CDS-intron	ENST00000265271	ENST00000510191		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
5CDS-5UTR	ENST00000265271	ENST00000511505		TCGA	RV	DLBC	TCGA-FA-A7DS-01A	RBM27	chr5	145583387	+	LARS	chr5	145557228	-
In-frame	ENST00000430069	ENST00000378295		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000604074		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000354437		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000346387		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000357733		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000603362		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000604479		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000378285		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000378280		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
In-frame	ENST00000430069	ENST00000378288		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
5CDS-5UTR	ENST00000430069	ENST00000378290		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000378295		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000604074		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000354437		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000346387		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000357733		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000603362		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000604479		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000378285		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000378280		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
Frame-shit	ENST00000457928	ENST00000378288		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
5CDS-5UTR	ENST00000457928	ENST00000378290		TCGA	RV	DLBC	TCGA-FA-A4XK-01A	TBL1XR1	chr3	176771561	-	TP73	chr1	3624113	+
intron-5UTR	ENST00000409817	ENST00000309955		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000409817	ENST00000443227		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000341222		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000340870		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000355558		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000341582		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000342795		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000395148		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000423241		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000409817	ENST00000490965		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000409817	ENST00000440180		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000409817	ENST00000457277		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000409817	ENST00000494258		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000409817	ENST00000479953		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000309955		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000241393	ENST00000443227		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000341222		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000340870		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000355558		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000341582		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000342795		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000395148		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000423241		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000241393	ENST00000490965		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000241393	ENST00000440180		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000241393	ENST00000457277		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000241393	ENST00000494258		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000241393	ENST00000479953		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000309955		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000466288	ENST00000443227		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000341222		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000340870		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000355558		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000341582		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000342795		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000395148		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000423241		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000466288	ENST00000490965		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000466288	ENST00000440180		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000466288	ENST00000457277		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000466288	ENST00000494258		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000466288	ENST00000479953		TCGA	RV	DLBC	TCGA-FA-A6HN-01A	CXCR4	chr2	136875616	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000369426	ENST00000370656		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
5CDS-intron	ENST00000369426	ENST00000370654		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
5CDS-intron	ENST00000235521	ENST00000370656		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
5CDS-intron	ENST00000235521	ENST00000370654		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
intron-intron	ENST00000537870	ENST00000370656		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
intron-intron	ENST00000537870	ENST00000370654		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
5UTR-intron	ENST00000497761	ENST00000370656		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
5UTR-intron	ENST00000497761	ENST00000370654		TCGA	RV	DLBC	TCGA-GR-7353-01A	WARS2	chr1	119683178	-	RPF1	chr1	84961565	+
In-frame	ENST00000406606	ENST00000446176		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000406606	ENST00000420781		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000406606	ENST00000355681		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5CDS-intron	ENST00000406606	ENST00000443566		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5CDS-intron	ENST00000406606	ENST00000478129		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000371850	ENST00000446176		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000371850	ENST00000420781		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000371850	ENST00000355681		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5CDS-intron	ENST00000371850	ENST00000443566		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5CDS-intron	ENST00000371850	ENST00000478129		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000371851	ENST00000446176		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000371851	ENST00000420781		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
In-frame	ENST00000371851	ENST00000355681		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5CDS-intron	ENST00000371851	ENST00000443566		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5CDS-intron	ENST00000371851	ENST00000478129		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5UTR-3CDS	ENST00000486113	ENST00000446176		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5UTR-3CDS	ENST00000486113	ENST00000420781		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5UTR-3CDS	ENST00000486113	ENST00000355681		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5UTR-intron	ENST00000486113	ENST00000443566		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
5UTR-intron	ENST00000486113	ENST00000478129		TCGA	RV	DLBC	TCGA-GS-A9TW-01A	VAV2	chr9	136857197	-	FNBP1	chr9	132757237	-
intron-intron	ENST00000338450	ENST00000458711		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000338450	ENST00000424185		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000338450	ENST00000397191		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000338450	ENST00000470164		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000338450	ENST00000309957		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000333219	ENST00000458711		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000333219	ENST00000424185		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000333219	ENST00000397191		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000333219	ENST00000470164		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000333219	ENST00000309957		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000375775	ENST00000458711		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000375775	ENST00000424185		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000375775	ENST00000397191		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000375775	ENST00000470164		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000375775	ENST00000309957		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000375774	ENST00000458711		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000375774	ENST00000424185		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000375774	ENST00000397191		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000375774	ENST00000470164		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000375774	ENST00000309957		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000464141	ENST00000458711		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000464141	ENST00000424185		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-intron	ENST00000464141	ENST00000397191		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000464141	ENST00000470164		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000464141	ENST00000309957		TCGA	RV	DLBC	TCGA-GR-A4D4-01A	ING1	chr13	111366632	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000377795	ENST00000216297		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000377795	ENST00000555943		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000353334	ENST00000216297		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000353334	ENST00000555943		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524315	ENST00000216297		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524315	ENST00000555943		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000009530	ENST00000216297		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000009530	ENST00000555943		TCGA	RV	DLBC	TCGA-GR-A4D5-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
In-frame	ENST00000349703	ENST00000303538		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	RFC1	chr4	39328183	-	PDS5A	chr4	39827108	-
5CDS-intron	ENST00000349703	ENST00000503396		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	RFC1	chr4	39328183	-	PDS5A	chr4	39827108	-
In-frame	ENST00000381897	ENST00000303538		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	RFC1	chr4	39328183	-	PDS5A	chr4	39827108	-
5CDS-intron	ENST00000381897	ENST00000503396		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	RFC1	chr4	39328183	-	PDS5A	chr4	39827108	-
5UTR-3CDS	ENST00000418436	ENST00000303538		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	RFC1	chr4	39328183	-	PDS5A	chr4	39827108	-
5UTR-intron	ENST00000418436	ENST00000503396		TCGA	RV	DLBC	TCGA-GS-A9TV-01A	RFC1	chr4	39328183	-	PDS5A	chr4	39827108	-
Frame-shit	ENST00000324288	ENST00000511072		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000324288	ENST00000442529		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000324288	ENST00000378398		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000324288	ENST00000441472		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000324288	ENST00000378391		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000324288	ENST00000514189		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000324288	ENST00000270722		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
5CDS-3UTR	ENST00000324288	ENST00000512462		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000511072		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000442529		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000378398		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000441472		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000378391		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000514189		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
Frame-shit	ENST00000381835	ENST00000270722		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
5CDS-3UTR	ENST00000381835	ENST00000512462		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000511072		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000442529		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000378398		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000441472		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000378391		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000514189		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3CDS	ENST00000537380	ENST00000270722		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
3UTR-3UTR	ENST00000537380	ENST00000512462		TCGA	RV	DLBC	TCGA-GS-A9TZ-01A	CIITA	chr16	10971239	+	PRDM16	chr1	3301716	+
intron-intron	ENST00000390559	ENST00000351288		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-intron	ENST00000390559	ENST00000453750		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-5UTR	ENST00000390559	ENST00000409031		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-5UTR	ENST00000390559	ENST00000431183		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-intron	ENST00000390559	ENST00000443958		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-intron	ENST00000390559	ENST00000339679		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-intron	ENST00000390559	ENST00000452225		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-intron	ENST00000390559	ENST00000426662		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
intron-intron	ENST00000390559	ENST00000473720		TCGA	LD	DLBC	TCGA-FA-A6HO-01A	IGHM	chr14	106318172	-	SMPD4	chr2	130939291	-
In-frame	ENST00000405201	ENST00000355329		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122090714	-
Frame-shit	ENST00000404621	ENST00000355329		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122090714	-
5UTR-3CDS	ENST00000404121	ENST00000355329		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122090714	-
Frame-shit	ENST00000356219	ENST00000355329		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122090714	-
Frame-shit	ENST00000397355	ENST00000355329		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122090714	-
Frame-shit	ENST00000429285	ENST00000355329		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	NCOR2	chr12	124979693	-	MORN3	chr12	122090714	-
3UTR-3CDS	ENST00000592666	ENST00000159111		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	UHRF1	chr19	4941943	+	KDM4B	chr19	5047487	+
3UTR-3CDS	ENST00000592666	ENST00000381759		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	UHRF1	chr19	4941943	+	KDM4B	chr19	5047487	+
3UTR-3CDS	ENST00000592666	ENST00000536461		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	UHRF1	chr19	4941943	+	KDM4B	chr19	5047487	+
3UTR-3UTR	ENST00000592666	ENST00000592175		TCGA	LD	DLBC	TCGA-FA-A7DS-01A	UHRF1	chr19	4941943	+	KDM4B	chr19	5047487	+
5UTR-5UTR	ENST00000332029	ENST00000259523		TCGA	LD	DLBC	TCGA-FA-A7Q1-01A	SOCS1	chr16	11349936	-	MYC	chr8	128750497	+
5UTR-5UTR	ENST00000332029	ENST00000377970		TCGA	LD	DLBC	TCGA-FA-A7Q1-01A	SOCS1	chr16	11349936	-	MYC	chr8	128750497	+
5UTR-5UTR	ENST00000332029	ENST00000524013		TCGA	LD	DLBC	TCGA-FA-A7Q1-01A	SOCS1	chr16	11349936	-	MYC	chr8	128750497	+
Frame-shit	ENST00000295025	ENST00000316752		TCGA	LD	DLBC	TCGA-FA-A82F-01A	REL	chr2	61149134	+	PUS10	chr2	61172243	-
Frame-shit	ENST00000295025	ENST00000407787		TCGA	LD	DLBC	TCGA-FA-A82F-01A	REL	chr2	61149134	+	PUS10	chr2	61172243	-
5CDS-intron	ENST00000295025	ENST00000398658		TCGA	LD	DLBC	TCGA-FA-A82F-01A	REL	chr2	61149134	+	PUS10	chr2	61172243	-
In-frame	ENST00000394479	ENST00000316752		TCGA	LD	DLBC	TCGA-FA-A82F-01A	REL	chr2	61149134	+	PUS10	chr2	61172243	-
In-frame	ENST00000394479	ENST00000407787		TCGA	LD	DLBC	TCGA-FA-A82F-01A	REL	chr2	61149134	+	PUS10	chr2	61172243	-
5CDS-intron	ENST00000394479	ENST00000398658		TCGA	LD	DLBC	TCGA-FA-A82F-01A	REL	chr2	61149134	+	PUS10	chr2	61172243	-
intron-3CDS	ENST00000409817	ENST00000390539		TCGA	LD	DLBC	TCGA-FA-A86F-01A	CXCR4	chr2	136875616	-	IGHA2	chr14	106054731	-
In-frame	ENST00000241393	ENST00000390539		TCGA	LD	DLBC	TCGA-FA-A86F-01A	CXCR4	chr2	136875616	-	IGHA2	chr14	106054731	-
intron-3CDS	ENST00000466288	ENST00000390539		TCGA	LD	DLBC	TCGA-FA-A86F-01A	CXCR4	chr2	136875616	-	IGHA2	chr14	106054731	-
intron-3CDS	ENST00000181796	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000181796	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000181796	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378470	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378470	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378470	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000468747	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000468747	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000468747	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000378467	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000378467	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000378467	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378465	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378465	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378465	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378458	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378458	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378458	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000478076	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000478076	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000478076	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378462	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378462	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000378462	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000496330	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000496330	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000496330	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000479731	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000479731	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
intron-3CDS	ENST00000479731	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000471815	ENST00000263125		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000471815	ENST00000397176		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
5UTR-3CDS	ENST00000471815	ENST00000539722		TCGA	LD	DLBC	TCGA-FA-A86F-01A	FAM107B	chr10	14646239	-	PRKCQ	chr10	6540520	-
In-frame	ENST00000367419	ENST00000253329		TCGA	LD	DLBC	TCGA-FA-A86F-01A	GINM1	chr6	149887670	+	PPIL4	chr6	149862567	-
5CDS-intron	ENST00000367419	ENST00000340881		TCGA	LD	DLBC	TCGA-FA-A86F-01A	GINM1	chr6	149887670	+	PPIL4	chr6	149862567	-
Frame-shit	ENST00000261207	ENST00000322446		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
5CDS-intron	ENST00000261207	ENST00000538173		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
Frame-shit	ENST00000450142	ENST00000322446		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
5CDS-intron	ENST00000450142	ENST00000538173		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
Frame-shit	ENST00000437004	ENST00000322446		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
5CDS-intron	ENST00000437004	ENST00000538173		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
In-frame	ENST00000546369	ENST00000322446		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
5CDS-intron	ENST00000546369	ENST00000538173		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
Frame-shit	ENST00000550107	ENST00000322446		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
5CDS-intron	ENST00000550107	ENST00000538173		TCGA	LD	DLBC	TCGA-FF-8043-01A	PPP1R12A	chr12	80266588	-	EIF2S3L	chr12	10675202	+
intron-intron	ENST00000313349	ENST00000317676		TCGA	LD	DLBC	TCGA-FF-8043-01A	SERTAD2	chr2	64977415	-	DEFB124	chr20	30060841	-
intron-5UTR	ENST00000313349	ENST00000481595		TCGA	LD	DLBC	TCGA-FF-8043-01A	SERTAD2	chr2	64977415	-	DEFB124	chr20	30060841	-
5UTR-intron	ENST00000476805	ENST00000317676		TCGA	LD	DLBC	TCGA-FF-8043-01A	SERTAD2	chr2	64977415	-	DEFB124	chr20	30060841	-
5UTR-5UTR	ENST00000476805	ENST00000481595		TCGA	LD	DLBC	TCGA-FF-8043-01A	SERTAD2	chr2	64977415	-	DEFB124	chr20	30060841	-
intron-3CDS	ENST00000472863	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000472863	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000472863	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000472863	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000498678	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000498678	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000498678	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000498678	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000460160	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000460160	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000460160	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000460160	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000476342	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000476342	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000476342	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000476342	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000552000	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000552000	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000552000	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000552000	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000470495	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000470495	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000470495	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000470495	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000311626	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000311626	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000311626	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000311626	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490677	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490677	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490677	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000490677	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000485909	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000485909	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000485909	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000485909	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000489475	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000489475	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000489475	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000489475	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000465120	ENST00000580974		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000465120	ENST00000299954		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000465120	ENST00000335257		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000465120	ENST00000581322		TCGA	LD	DLBC	TCGA-FF-8047-01A	HOXB3	chr17	46681842	-	PITPNC1	chr17	65528918	+
5UTR-3CDS	ENST00000587758	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000587758	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000587758	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000588426	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000588426	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000588426	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000356783	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000356783	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000356783	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000291901	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000291901	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000291901	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000536926	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000536926	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000536926	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000588981	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000588981	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000588981	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
intron-3CDS	ENST00000587465	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
intron-3CDS	ENST00000587465	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
intron-5UTR	ENST00000587465	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
intron-3CDS	ENST00000585321	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
intron-3CDS	ENST00000585321	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
intron-5UTR	ENST00000585321	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000592920	ENST00000344887		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-3CDS	ENST00000592920	ENST00000588882		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
5UTR-5UTR	ENST00000592920	ENST00000590463		TCGA	LD	DLBC	TCGA-FF-A7CX-01A	TNNT1	chr19	55660529	-	TNNI3	chr19	55666198	-
In-frame	ENST00000251849	ENST00000412331		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
In-frame	ENST00000251849	ENST00000381683		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
In-frame	ENST00000251849	ENST00000406934		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
5CDS-intron	ENST00000251849	ENST00000476955		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
In-frame	ENST00000442415	ENST00000412331		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
In-frame	ENST00000442415	ENST00000381683		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
In-frame	ENST00000442415	ENST00000406934		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
5CDS-intron	ENST00000442415	ENST00000476955		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-3CDS	ENST00000534997	ENST00000412331		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-3CDS	ENST00000534997	ENST00000381683		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-3CDS	ENST00000534997	ENST00000406934		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-intron	ENST00000534997	ENST00000476955		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-3CDS	ENST00000542177	ENST00000412331		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-3CDS	ENST00000542177	ENST00000381683		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-3CDS	ENST00000542177	ENST00000406934		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
intron-intron	ENST00000542177	ENST00000476955		TCGA	LD	DLBC	TCGA-G8-6325-01A	RAF1	chr3	12653449	-	EIF3L	chr22	38282772	+
Frame-shit	ENST00000380739	ENST00000380520		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
Frame-shit	ENST00000380739	ENST00000380524		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
Frame-shit	ENST00000380739	ENST00000380529		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
Frame-shit	ENST00000380739	ENST00000380539		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
Frame-shit	ENST00000380739	ENST00000380546		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
Frame-shit	ENST00000380739	ENST00000335686		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000537185	ENST00000380520		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000537185	ENST00000380524		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000537185	ENST00000380529		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000537185	ENST00000380539		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000537185	ENST00000380546		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000537185	ENST00000335686		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000476896	ENST00000380520		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000476896	ENST00000380524		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000476896	ENST00000380529		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000476896	ENST00000380539		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000476896	ENST00000380546		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
5UTR-3CDS	ENST00000476896	ENST00000335686		TCGA	LD	DLBC	TCGA-G8-6326-01A	SERPINB1	chr6	2838116	-	SERPINB6	chr6	2953420	-
In-frame	ENST00000361421	ENST00000341695		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
In-frame	ENST00000361421	ENST00000348706		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
In-frame	ENST00000361421	ENST00000432483		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
5CDS-intron	ENST00000361421	ENST00000354147		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
5CDS-intron	ENST00000361421	ENST00000380004		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
5CDS-intron	ENST00000361421	ENST00000357415		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
5CDS-5UTR	ENST00000361421	ENST00000509426		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
5CDS-5UTR	ENST00000361421	ENST00000310267		TCGA	LD	DLBC	TCGA-G8-6326-01A	TOX	chr8	59851861	-	PPA2	chr4	106345479	-
5UTR-5UTR	ENST00000406870	ENST00000505618		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
5UTR-5UTR	ENST00000406870	ENST00000381799		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
5UTR-intron	ENST00000406870	ENST00000514143		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
intron-5UTR	ENST00000232014	ENST00000505618		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
intron-5UTR	ENST00000232014	ENST00000381799		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
intron-intron	ENST00000232014	ENST00000514143		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
intron-5UTR	ENST00000450123	ENST00000505618		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
intron-5UTR	ENST00000450123	ENST00000381799		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
intron-intron	ENST00000450123	ENST00000514143		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
5UTR-5UTR	ENST00000496823	ENST00000505618		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
5UTR-5UTR	ENST00000496823	ENST00000381799		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
5UTR-intron	ENST00000496823	ENST00000514143		TCGA	LD	DLBC	TCGA-G8-6906-01A	BCL6	chr3	187463198	-	RHOH	chr4	40244334	+
Frame-shit	ENST00000293677	ENST00000255608		TCGA	LD	DLBC	TCGA-GR-A4D4-01A	RAVER1	chr19	10443965	-	BTBD2	chr19	1997462	-
5CDS-5UTR	ENST00000293677	ENST00000590646		TCGA	LD	DLBC	TCGA-GR-A4D4-01A	RAVER1	chr19	10443965	-	BTBD2	chr19	1997462	-
Frame-shit	ENST00000297423	ENST00000343508		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000297423	ENST00000297405		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000297423	ENST00000455883		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000297423	ENST00000352409		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
5CDS-intron	ENST00000297423	ENST00000519485		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000518074	ENST00000343508		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000518074	ENST00000297405		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000518074	ENST00000455883		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000518074	ENST00000352409		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
5CDS-intron	ENST00000518074	ENST00000519485		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000541342	ENST00000343508		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000541342	ENST00000297405		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000541342	ENST00000455883		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000541342	ENST00000352409		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
5CDS-intron	ENST00000541342	ENST00000519485		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
3UTR-3CDS	ENST00000521214	ENST00000343508		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
3UTR-3CDS	ENST00000521214	ENST00000297405		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
3UTR-3CDS	ENST00000521214	ENST00000455883		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
3UTR-3CDS	ENST00000521214	ENST00000352409		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
3UTR-intron	ENST00000521214	ENST00000519485		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000517693	ENST00000343508		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000517693	ENST00000297405		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000517693	ENST00000455883		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000517693	ENST00000352409		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-intron	ENST00000517693	ENST00000519485		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000518060	ENST00000343508		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000518060	ENST00000297405		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000518060	ENST00000455883		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-3CDS	ENST00000518060	ENST00000352409		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
intron-intron	ENST00000518060	ENST00000519485		TCGA	LD	DLBC	TCGA-GS-A9TQ-01A	SPIDR	chr8	48511758	+	CSMD3	chr8	113569183	-
Frame-shit	ENST00000318789	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000318789	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000318789	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000318789	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000475937	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000475937	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000475937	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000475937	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000493089	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000493089	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000493089	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000493089	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000484350	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000484350	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000484350	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000484350	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000318779	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000318779	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
Frame-shit	ENST00000318779	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000318779	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-3CDS	ENST00000491238	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-3CDS	ENST00000491238	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-3CDS	ENST00000491238	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-intron	ENST00000491238	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000498215	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000498215	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000498215	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000498215	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000468577	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000468577	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
In-frame	ENST00000468577	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-intron	ENST00000468577	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-3CDS	ENST00000472382	ENST00000252699		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-3CDS	ENST00000472382	ENST00000424234		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-3CDS	ENST00000472382	ENST00000390009		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
intron-intron	ENST00000472382	ENST00000497637		TCGA	LD	DLBC	TCGA-GS-A9TU-01A	FOXP1	chr3	71247353	-	ACTN4	chr19	39217597	+
5CDS-3UTR	ENST00000337318	ENST00000474155		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-3UTR	ENST00000337318	ENST00000277570		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-intron	ENST00000337318	ENST00000379200		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-3UTR	ENST00000392754	ENST00000474155		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-3UTR	ENST00000392754	ENST00000277570		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-intron	ENST00000392754	ENST00000379200		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-3UTR	ENST00000280780	ENST00000474155		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-3UTR	ENST00000280780	ENST00000277570		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
5CDS-intron	ENST00000280780	ENST00000379200		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	FAM53B	chr10	126384727	-	PROSER2	chr10	11908530	+
In-frame	ENST00000521746	ENST00000487273		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
5CDS-intron	ENST00000521746	ENST00000466936		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
5CDS-intron	ENST00000521746	ENST00000481513		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
5CDS-intron	ENST00000521746	ENST00000484143		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
In-frame	ENST00000420274	ENST00000487273		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
5CDS-intron	ENST00000420274	ENST00000466936		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
5CDS-intron	ENST00000420274	ENST00000481513		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
5CDS-intron	ENST00000420274	ENST00000484143		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
3UTR-3CDS	ENST00000388745	ENST00000487273		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
3UTR-intron	ENST00000388745	ENST00000466936		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
3UTR-intron	ENST00000388745	ENST00000481513		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
3UTR-intron	ENST00000388745	ENST00000484143		TCGA	LD	DLBC	TCGA-GS-A9TV-01A	PLEKHA2	chr8	38775588	+	ADAM9	chr8	38876372	+
Frame-shit	ENST00000229335	ENST00000328306		TCGA	LD	DLBC	TCGA-GS-A9TW-01A	AICDA	chr12	8765356	-	SLC9A7	chrX	46541970	-
5CDS-intron	ENST00000229335	ENST00000464933		TCGA	LD	DLBC	TCGA-GS-A9TW-01A	AICDA	chr12	8765356	-	SLC9A7	chrX	46541970	-
Frame-shit	ENST00000537228	ENST00000328306		TCGA	LD	DLBC	TCGA-GS-A9TW-01A	AICDA	chr12	8765356	-	SLC9A7	chrX	46541970	-
5CDS-intron	ENST00000537228	ENST00000464933		TCGA	LD	DLBC	TCGA-GS-A9TW-01A	AICDA	chr12	8765356	-	SLC9A7	chrX	46541970	-
5UTR-3CDS	ENST00000406870	ENST00000390548		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	BCL6	chr3	187463198	-	IGHG1	chr14	106209407	-
intron-3CDS	ENST00000232014	ENST00000390548		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	BCL6	chr3	187463198	-	IGHG1	chr14	106209407	-
intron-3CDS	ENST00000450123	ENST00000390548		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	BCL6	chr3	187463198	-	IGHG1	chr14	106209407	-
5UTR-3CDS	ENST00000496823	ENST00000390548		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	BCL6	chr3	187463198	-	IGHG1	chr14	106209407	-
5CDS-5UTR	ENST00000409192	ENST00000322231		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000339077		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000539124		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000542558		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000409689		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000545443		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000479288		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409192	ENST00000322275		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409192	ENST00000410047		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409192	ENST00000545771		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000344962	ENST00000322231		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000339077		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000539124		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000542558		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000409689		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000545443		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000479288		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000344962	ENST00000322275		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000344962	ENST00000410047		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000344962	ENST00000545771		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409653	ENST00000322231		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000339077		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000539124		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000542558		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000409689		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000545443		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000479288		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409653	ENST00000322275		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409653	ENST00000410047		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409653	ENST00000545771		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409994	ENST00000322231		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000339077		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000539124		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000542558		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000409689		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000545443		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000479288		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-intron	ENST00000409994	ENST00000322275		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409994	ENST00000410047		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
5CDS-5UTR	ENST00000409994	ENST00000545771		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-5UTR	ENST00000483090	ENST00000322231		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000339077		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000539124		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000542558		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000409689		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000545443		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000479288		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-intron	ENST00000483090	ENST00000322275		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-5UTR	ENST00000483090	ENST00000410047		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
intron-5UTR	ENST00000483090	ENST00000545771		TCGA	LD	DLBC	TCGA-GS-A9TY-01A	FAM221A	chr7	23731215	+	KLHL7	chr7	23157453	+
In-frame	ENST00000263382	ENST00000264834		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	ASF1B	chr19	14236933	-	KLF1	chr19	12996626	-
In-frame	ENST00000592798	ENST00000264834		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	ASF1B	chr19	14236933	-	KLF1	chr19	12996626	-
In-frame	ENST00000474890	ENST00000264834		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	ASF1B	chr19	14236933	-	KLF1	chr19	12996626	-
intron-3UTR	ENST00000385231	ENST00000470041		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385231	ENST00000468509		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385231	ENST00000367129		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385231	ENST00000367128		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385231	ENST00000341209		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385231	ENST00000607379		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-3UTR	ENST00000385055	ENST00000470041		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385055	ENST00000468509		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385055	ENST00000367129		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385055	ENST00000367128		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385055	ENST00000341209		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-intron	ENST00000385055	ENST00000607379		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	C1orf132	chr1	207989274	-	FAM72A	chr1	206141446	-
intron-3CDS	ENST00000472729	ENST00000238714		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	COMMD1	chr2	62132993	+	PAPOLG	chr2	60987269	+
intron-intron	ENST00000472729	ENST00000483370		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	COMMD1	chr2	62132993	+	PAPOLG	chr2	60987269	+
Frame-shit	ENST00000311832	ENST00000238714		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	COMMD1	chr2	62132993	+	PAPOLG	chr2	60987269	+
5CDS-intron	ENST00000311832	ENST00000483370		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	COMMD1	chr2	62132993	+	PAPOLG	chr2	60987269	+
Frame-shit	ENST00000538736	ENST00000238714		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	COMMD1	chr2	62132993	+	PAPOLG	chr2	60987269	+
5CDS-intron	ENST00000538736	ENST00000483370		TCGA	LD	DLBC	TCGA-RQ-A6JB-01A	COMMD1	chr2	62132993	+	PAPOLG	chr2	60987269	+
5CDS-5UTR	ENST00000314797	ENST00000265062		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	COPG1	chr3	128987463	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000314797	ENST00000482525		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	COPG1	chr3	128987463	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000314797	ENST00000485280		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	COPG1	chr3	128987463	+	RAB7A	chr3	128514203	+
5UTR-intron	ENST00000434000	ENST00000454077		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
5UTR-5UTR	ENST00000434000	ENST00000389384		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
5UTR-intron	ENST00000434000	ENST00000593073		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
5CDS-intron	ENST00000591680	ENST00000454077		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
5CDS-5UTR	ENST00000591680	ENST00000389384		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
5CDS-intron	ENST00000591680	ENST00000593073		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-intron	ENST00000586265	ENST00000454077		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-5UTR	ENST00000586265	ENST00000389384		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-intron	ENST00000586265	ENST00000593073		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-intron	ENST00000592154	ENST00000454077		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-5UTR	ENST00000592154	ENST00000389384		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-intron	ENST00000592154	ENST00000593073		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-intron	ENST00000588554	ENST00000454077		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-5UTR	ENST00000588554	ENST00000389384		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
intron-intron	ENST00000588554	ENST00000593073		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	GPATCH8	chr17	42541840	-	ATXN7L3	chr17	42275498	-
5CDS-3UTR	ENST00000331563	ENST00000260197		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
5CDS-intron	ENST00000331563	ENST00000532451		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
5CDS-intron	ENST00000331563	ENST00000525532		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
5CDS-intron	ENST00000331563	ENST00000532694		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
5CDS-intron	ENST00000331563	ENST00000534286		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
5CDS-intron	ENST00000331563	ENST00000527934		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
intron-3UTR	ENST00000530695	ENST00000260197		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
intron-intron	ENST00000530695	ENST00000532451		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
intron-intron	ENST00000530695	ENST00000525532		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
intron-intron	ENST00000530695	ENST00000532694		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
intron-intron	ENST00000530695	ENST00000534286		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
intron-intron	ENST00000530695	ENST00000527934		TCGA	LD	DLBC	TCGA-VB-A8QN-01A	PKP3	chr11	403771	+	SORL1	chr11	121502725	+
Frame-shit	ENST00000399506	ENST00000437099		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000399506	ENST00000323816		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000399506	ENST00000432992		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000399506	ENST00000540214		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000399506	ENST00000585266		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000399506	ENST00000580865		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000399506	ENST00000583882		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000399506	ENST00000542249		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000399506	ENST00000396115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000399506	ENST00000579158		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-5UTR	ENST00000399506	ENST00000578655		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000302955	ENST00000437099		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000302955	ENST00000323816		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000302955	ENST00000432992		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000302955	ENST00000540214		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000302955	ENST00000585266		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000302955	ENST00000580865		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000302955	ENST00000583882		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000302955	ENST00000542249		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000302955	ENST00000396115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000302955	ENST00000579158		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-5UTR	ENST00000302955	ENST00000578655		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-3CDS	ENST00000399510	ENST00000437099		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-3CDS	ENST00000399510	ENST00000323816		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-3CDS	ENST00000399510	ENST00000432992		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-3CDS	ENST00000399510	ENST00000540214		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-3CDS	ENST00000399510	ENST00000585266		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-intron	ENST00000399510	ENST00000580865		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-intron	ENST00000399510	ENST00000583882		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-intron	ENST00000399510	ENST00000542249		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-intron	ENST00000399510	ENST00000396115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-intron	ENST00000399510	ENST00000579158		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
intron-5UTR	ENST00000399510	ENST00000578655		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000485100	ENST00000437099		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000485100	ENST00000323816		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000485100	ENST00000432992		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000485100	ENST00000540214		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
Frame-shit	ENST00000485100	ENST00000585266		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000485100	ENST00000580865		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000485100	ENST00000583882		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000485100	ENST00000542249		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000485100	ENST00000396115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-intron	ENST00000485100	ENST00000579158		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-5UTR	ENST00000485100	ENST00000578655		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	DLG4	chr17	7120437	-	GAS7	chr17	9885201	-
5CDS-5UTR	ENST00000272427	ENST00000483195		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000394019		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000423644		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000346834		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000359484		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000357822		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000358683		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000377632		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000272427	ENST00000377634		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000483195		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000394019		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000423644		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000346834		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000359484		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000357822		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000358683		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000377632		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
intron-5UTR	ENST00000490919	ENST00000377634		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000483195		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000394019		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000423644		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000346834		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000359484		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000357822		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000358683		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000377632		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000410104	ENST00000377634		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	EXOC6B	chr2	72945232	-	SLC4A5	chr2	74460690	-
5CDS-5UTR	ENST00000268182	ENST00000354377		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-intron	ENST00000268182	ENST00000558115		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-5UTR	ENST00000268182	ENST00000379090		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000354377		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560738	ENST00000558115		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000379090		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000354377		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560020	ENST00000558115		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000379090		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
Frame-shit	ENST00000354570	ENST00000372141		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000354570	ENST00000404547		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000354570	ENST00000372142		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000354570	ENST00000404576		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
Frame-shit	ENST00000354570	ENST00000556918		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000354570	ENST00000537893		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
5CDS-intron	ENST00000354570	ENST00000545131		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000454590	ENST00000372141		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000454590	ENST00000404547		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000454590	ENST00000372142		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000454590	ENST00000404576		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000454590	ENST00000556918		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000454590	ENST00000537893		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000454590	ENST00000545131		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000544465	ENST00000372141		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000544465	ENST00000404547		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000544465	ENST00000372142		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000544465	ENST00000404576		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000544465	ENST00000556918		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000544465	ENST00000537893		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000544465	ENST00000545131		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000438100	ENST00000372141		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000438100	ENST00000404547		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000438100	ENST00000372142		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000438100	ENST00000404576		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000438100	ENST00000556918		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000438100	ENST00000537893		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000438100	ENST00000545131		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000432797	ENST00000372141		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000432797	ENST00000404547		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000432797	ENST00000372142		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000432797	ENST00000404576		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-3CDS	ENST00000432797	ENST00000556918		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000432797	ENST00000537893		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
intron-intron	ENST00000432797	ENST00000545131		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	MAP7	chr6	136871480	-	NRG3	chr10	84118495	+
In-frame	ENST00000265433	ENST00000523719		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
In-frame	ENST00000265433	ENST00000276609		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
In-frame	ENST00000265433	ENST00000309536		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
5CDS-3UTR	ENST00000265433	ENST00000520249		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
5UTR-3CDS	ENST00000409330	ENST00000523719		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
5UTR-3CDS	ENST00000409330	ENST00000276609		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
5UTR-3CDS	ENST00000409330	ENST00000309536		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
5UTR-3UTR	ENST00000409330	ENST00000520249		TCGA	RV	ESCA	TCGA-RE-A7BO-01A	NBN	chr8	90994950	-	SLC26A7	chr8	92406025	+
5CDS-5UTR	ENST00000367137	ENST00000379339		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000448924		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000294576		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000421241		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000482816		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000437760		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000379320		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000367137	ENST00000379319		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000379339		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000448924		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000294576		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000421241		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000482816		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000437760		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000379320		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000468057	ENST00000379319		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SLC41A1	chr1	205779198	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000330817	ENST00000341280		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	ALG12	chr22	50303542	-	IL17REL	chr22	50447093	-
5CDS-5UTR	ENST00000330817	ENST00000389983		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	ALG12	chr22	50303542	-	IL17REL	chr22	50447093	-
intron-5UTR	ENST00000585509	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
intron-5UTR	ENST00000589297	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000591455	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000446868	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000361101	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000589296	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
intron-5UTR	ENST00000586175	ENST00000303592		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	CYTH1	chr17	76778284	-	KCNJ4	chr22	38824176	-
5UTR-5UTR	ENST00000267731	ENST00000290378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
5UTR-intron	ENST00000267731	ENST00000557860		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
intron-5UTR	ENST00000569811	ENST00000290378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
intron-intron	ENST00000569811	ENST00000557860		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
intron-5UTR	ENST00000342314	ENST00000290378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
intron-intron	ENST00000342314	ENST00000557860		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
intron-5UTR	ENST00000438958	ENST00000290378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
intron-intron	ENST00000438958	ENST00000557860		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GOLGA8B	chr15	34875717	-	ACTC1	chr15	35087031	-
Frame-shit	ENST00000360957	ENST00000431666		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
Frame-shit	ENST00000360957	ENST00000338624		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
In-frame	ENST00000360957	ENST00000245615		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
5CDS-intron	ENST00000360957	ENST00000391754		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
5CDS-intron	ENST00000360957	ENST00000474910		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
Frame-shit	ENST00000418234	ENST00000431666		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
Frame-shit	ENST00000418234	ENST00000338624		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
In-frame	ENST00000418234	ENST00000245615		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
5CDS-intron	ENST00000418234	ENST00000391754		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
5CDS-intron	ENST00000418234	ENST00000474910		TCGA	RV	ESCA	TCGA-L5-A891-01A	PPP1R13L	chr19	45885785	-	MBOAT7	chr19	54678125	-
5CDS-5UTR	ENST00000321030	ENST00000282282		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRPF31	chr19	54629992	+	ZNF547	chr19	57879912	+
5CDS-5UTR	ENST00000419967	ENST00000282282		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRPF31	chr19	54629992	+	ZNF547	chr19	57879912	+
5CDS-5UTR	ENST00000391755	ENST00000282282		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRPF31	chr19	54629992	+	ZNF547	chr19	57879912	+
3UTR-5UTR	ENST00000498612	ENST00000282282		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRPF31	chr19	54629992	+	ZNF547	chr19	57879912	+
In-frame	ENST00000341084	ENST00000409306		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
In-frame	ENST00000341084	ENST00000375551		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
In-frame	ENST00000341084	ENST00000375559		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
5CDS-intron	ENST00000341084	ENST00000483537		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
In-frame	ENST00000519449	ENST00000409306		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
In-frame	ENST00000519449	ENST00000375551		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
In-frame	ENST00000519449	ENST00000375559		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
5CDS-intron	ENST00000519449	ENST00000483537		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
intron-3CDS	ENST00000523255	ENST00000409306		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
intron-3CDS	ENST00000523255	ENST00000375551		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
intron-3CDS	ENST00000523255	ENST00000375559		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
intron-intron	ENST00000523255	ENST00000483537		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	RNF19A	chr8	101299729	-	F10	chr13	113792771	+
Frame-shit	ENST00000374232	ENST00000337530		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SNX30	chr9	115513437	+	KIAA1958	chr9	115407930	+
5CDS-intron	ENST00000374232	ENST00000374244		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SNX30	chr9	115513437	+	KIAA1958	chr9	115407930	+
5CDS-intron	ENST00000374232	ENST00000536272		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SNX30	chr9	115513437	+	KIAA1958	chr9	115407930	+
intron-3CDS	ENST00000604751	ENST00000337530		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SNX30	chr9	115513437	+	KIAA1958	chr9	115407930	+
intron-intron	ENST00000604751	ENST00000374244		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SNX30	chr9	115513437	+	KIAA1958	chr9	115407930	+
intron-intron	ENST00000604751	ENST00000536272		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SNX30	chr9	115513437	+	KIAA1958	chr9	115407930	+
Frame-shit	ENST00000382368	ENST00000332830		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
Frame-shit	ENST00000382368	ENST00000577226		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
5CDS-intron	ENST00000382368	ENST00000268756		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
5CDS-5UTR	ENST00000382368	ENST00000582655		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
Frame-shit	ENST00000453700	ENST00000332830		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
Frame-shit	ENST00000453700	ENST00000577226		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
5CDS-intron	ENST00000453700	ENST00000268756		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
5CDS-5UTR	ENST00000453700	ENST00000582655		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	FBXL18	chr7	5540119	-	PHF12	chr17	27238255	-
5UTR-3CDS	ENST00000405486	ENST00000396504		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
5UTR-3CDS	ENST00000405486	ENST00000355209		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
5UTR-intron	ENST00000405486	ENST00000337566		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
5UTR-intron	ENST00000405486	ENST00000407461		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
5UTR-5UTR	ENST00000405486	ENST00000420561		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-3CDS	ENST00000356244	ENST00000396504		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-3CDS	ENST00000356244	ENST00000355209		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-intron	ENST00000356244	ENST00000337566		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-intron	ENST00000356244	ENST00000407461		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-5UTR	ENST00000356244	ENST00000420561		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-3CDS	ENST00000455915	ENST00000396504		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-3CDS	ENST00000455915	ENST00000355209		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-intron	ENST00000455915	ENST00000337566		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-intron	ENST00000455915	ENST00000407461		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-5UTR	ENST00000455915	ENST00000420561		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-3CDS	ENST00000407260	ENST00000396504		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-3CDS	ENST00000407260	ENST00000355209		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-intron	ENST00000407260	ENST00000337566		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-intron	ENST00000407260	ENST00000407461		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
intron-5UTR	ENST00000407260	ENST00000420561		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41928749	-
Frame-shit	ENST00000296589	ENST00000382065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000296589	ENST00000231338		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000296589	ENST00000513065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
intron-3CDS	ENST00000342059	ENST00000382065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
intron-3CDS	ENST00000342059	ENST00000231338		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
intron-intron	ENST00000342059	ENST00000513065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000382102	ENST00000382065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000382102	ENST00000231338		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000382102	ENST00000513065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000509381	ENST00000382065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000509381	ENST00000231338		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000509381	ENST00000513065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000345083	ENST00000382065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000345083	ENST00000231338		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000345083	ENST00000513065		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SLC45A2	chr5	33982341	-	C1QTNF3	chr5	34035863	-
In-frame	ENST00000264012	ENST00000569600		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
In-frame	ENST00000264012	ENST00000219139		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
5CDS-3UTR	ENST00000264012	ENST00000569683		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
In-frame	ENST00000429102	ENST00000569600		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
In-frame	ENST00000429102	ENST00000219139		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
5CDS-3UTR	ENST00000429102	ENST00000569683		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3CDS	ENST00000581171	ENST00000569600		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3CDS	ENST00000581171	ENST00000219139		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3UTR	ENST00000581171	ENST00000569683		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3CDS	ENST00000569117	ENST00000569600		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3CDS	ENST00000569117	ENST00000219139		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3UTR	ENST00000569117	ENST00000569683		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CDH3	chr16	68679653	+	C16orf70	chr16	67154015	+
intron-3CDS	ENST00000396352	ENST00000265395		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	HOXA3	chr7	27179702	-	HIBADH	chr7	27672064	-
intron-3CDS	ENST00000317201	ENST00000265395		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	HOXA3	chr7	27179702	-	HIBADH	chr7	27672064	-
5UTR-3CDS	ENST00000521401	ENST00000265395		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	HOXA3	chr7	27179702	-	HIBADH	chr7	27672064	-
intron-5UTR	ENST00000391826	ENST00000593685		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000391826	ENST00000323039		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000391826	ENST00000348817		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-intron	ENST00000391826	ENST00000597639		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000391826	ENST00000430012		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000391826	ENST00000601972		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000595948	ENST00000593685		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000595948	ENST00000323039		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000595948	ENST00000348817		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000595948	ENST00000597639		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000595948	ENST00000430012		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000595948	ENST00000601972		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000341114	ENST00000593685		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000341114	ENST00000323039		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000341114	ENST00000348817		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000341114	ENST00000597639		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000341114	ENST00000430012		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000341114	ENST00000601972		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	IL4I1	chr19	50430951	-	DYRK1B	chr19	40322608	-
In-frame	ENST00000508628	ENST00000361193		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000508628	ENST00000411502		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000508628	ENST00000546047		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000571602		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000572725		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000361193		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000411502		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000546047		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000571602		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000572725		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000582970	ENST00000361193		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000582970	ENST00000411502		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000582970	ENST00000546047		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000571602		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000572725		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000361193		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000411502		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000546047		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000571602		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000572725		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000336301	ENST00000361193		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000336301	ENST00000411502		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000336301	ENST00000546047		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000571602		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000572725		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000361193		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000411502		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000546047		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000571602		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000572725		TCGA	RV	ESCA	TCGA-LN-A7HW-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000321276	ENST00000272895		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	SGPP2	chr2	223289540	+	ABCA12	chr2	215882856	-
Frame-shit	ENST00000321276	ENST00000389661		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	SGPP2	chr2	223289540	+	ABCA12	chr2	215882856	-
5CDS-intron	ENST00000321276	ENST00000412081		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	SGPP2	chr2	223289540	+	ABCA12	chr2	215882856	-
Frame-shit	ENST00000369005	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000369005	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
In-frame	ENST00000369005	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000369005	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000369005	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000369005	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000513429	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000513429	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000513429	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000513429	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000513429	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000513429	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000515273	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000515273	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
In-frame	ENST00000515273	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000515273	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000515273	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000515273	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000515603	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000515603	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
In-frame	ENST00000515603	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000515603	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000515603	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000515603	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000453444	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000453444	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
In-frame	ENST00000453444	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000453444	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000453444	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000453444	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000358010	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000358010	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000358010	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000358010	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000358010	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000358010	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000334433	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
Frame-shit	ENST00000334433	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
In-frame	ENST00000334433	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000334433	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000334433	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000334433	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369001	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369001	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369001	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369001	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369001	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369001	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369000	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369000	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369000	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369000	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369000	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369000	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000360561	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000360561	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000360561	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000360561	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000360561	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000360561	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000368999	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000368999	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000368999	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000368999	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000368999	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000368999	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369004	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369004	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000369004	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369004	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369004	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000369004	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000260733	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000260733	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000260733	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000260733	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000260733	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000260733	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000493951	ENST00000398250		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000493951	ENST00000439221		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-3CDS	ENST00000493951	ENST00000398248		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000493951	ENST00000541332		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000493951	ENST00000369073		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
intron-intron	ENST00000493951	ENST00000496437		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	TACC2	chr10	123848106	+	PPAPDC1A	chr10	122348815	+
5CDS-intron	ENST00000337137	ENST00000476901		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000337137	ENST00000290846		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000337137	ENST00000381019		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000337137	ENST00000424260		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000380995	ENST00000476901		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000380995	ENST00000290846		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000380995	ENST00000381019		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000380995	ENST00000424260		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000407381	ENST00000476901		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000407381	ENST00000290846		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000407381	ENST00000381019		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000407381	ENST00000424260		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000355704	ENST00000476901		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000355704	ENST00000290846		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000355704	ENST00000381019		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000355704	ENST00000424260		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000472791	ENST00000476901		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000472791	ENST00000290846		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000472791	ENST00000381019		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-intron	ENST00000472791	ENST00000424260		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000406733	ENST00000476901		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000406733	ENST00000290846		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000406733	ENST00000381019		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
5CDS-intron	ENST00000406733	ENST00000424260		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	TBC1D22A	chr22	47393605	+	TRMU	chr22	46752739	+
intron-3CDS	ENST00000374706	ENST00000395867		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
intron-3CDS	ENST00000374706	ENST00000374648		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
intron-3CDS	ENST00000374706	ENST00000357328		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
intron-3CDS	ENST00000374706	ENST00000494133		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
5UTR-3CDS	ENST00000265375	ENST00000395867		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
5UTR-3CDS	ENST00000265375	ENST00000374648		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
5UTR-3CDS	ENST00000265375	ENST00000357328		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
5UTR-3CDS	ENST00000265375	ENST00000494133		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000339497	ENST00000395867		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000339497	ENST00000374648		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000339497	ENST00000357328		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000339497	ENST00000494133		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000374704	ENST00000395867		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000374704	ENST00000374648		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000374704	ENST00000357328		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000374704	ENST00000494133		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
3UTR-3CDS	ENST00000492478	ENST00000395867		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
3UTR-3CDS	ENST00000492478	ENST00000374648		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
3UTR-3CDS	ENST00000492478	ENST00000357328		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
3UTR-3CDS	ENST00000492478	ENST00000494133		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	CCNY	chr10	35626135	+	ZNF248	chr10	38127039	-
Frame-shit	ENST00000454817	ENST00000420764		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
Frame-shit	ENST00000454817	ENST00000358747		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
Frame-shit	ENST00000454817	ENST00000395550		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000454817	ENST00000383733		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000454817	ENST00000337000		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000454817	ENST00000455886		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000454817	ENST00000482282		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
Frame-shit	ENST00000328333	ENST00000420764		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
Frame-shit	ENST00000328333	ENST00000358747		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
Frame-shit	ENST00000328333	ENST00000395550		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000328333	ENST00000383733		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000328333	ENST00000337000		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000328333	ENST00000455886		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
5CDS-intron	ENST00000328333	ENST00000482282		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-3CDS	ENST00000470076	ENST00000420764		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-3CDS	ENST00000470076	ENST00000358747		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-3CDS	ENST00000470076	ENST00000395550		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-intron	ENST00000470076	ENST00000383733		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-intron	ENST00000470076	ENST00000337000		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-intron	ENST00000470076	ENST00000455886		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
intron-intron	ENST00000470076	ENST00000482282		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	COL7A1	chr3	48630003	-	SLC26A6	chr3	48665471	-
In-frame	ENST00000405709	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000405709	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000405709	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000405709	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
In-frame	ENST00000331762	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000331762	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000331762	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000331762	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
Frame-shit	ENST00000452895	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000452895	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000452895	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000452895	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
In-frame	ENST00000415362	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000415362	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000415362	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000415362	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
In-frame	ENST00000447215	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000447215	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000447215	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000447215	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
In-frame	ENST00000437687	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000437687	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000437687	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
5CDS-intron	ENST00000437687	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-3CDS	ENST00000489381	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-intron	ENST00000489381	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-intron	ENST00000489381	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-intron	ENST00000489381	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-3CDS	ENST00000450877	ENST00000428084		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-intron	ENST00000450877	ENST00000494651		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-intron	ENST00000450877	ENST00000437633		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
intron-intron	ENST00000450877	ENST00000476846		TCGA	RV	ESCA	TCGA-JY-A938-01A	IMMP2L	chr7	111127294	-	DOCK4	chr7	111452005	-
In-frame	ENST00000326047	ENST00000376552		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
In-frame	ENST00000326047	ENST00000376520		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
In-frame	ENST00000326047	ENST00000376544		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
In-frame	ENST00000326047	ENST00000376537		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
5CDS-5UTR	ENST00000326047	ENST00000376534		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
5CDS-5UTR	ENST00000326047	ENST00000265284		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
5CDS-intron	ENST00000326047	ENST00000455913		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-3CDS	ENST00000425755	ENST00000376552		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-3CDS	ENST00000425755	ENST00000376520		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-3CDS	ENST00000425755	ENST00000376544		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-3CDS	ENST00000425755	ENST00000376537		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-5UTR	ENST00000425755	ENST00000376534		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-5UTR	ENST00000425755	ENST00000265284		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
intron-intron	ENST00000425755	ENST00000455913		TCGA	RV	ESCA	TCGA-L5-A891-01A	KIF15	chr3	44828066	+	TLE4	chr9	82188604	+
5UTR-3CDS	ENST00000343242	ENST00000301738		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MAFK	chr7	1570534	+	KCTD5	chr16	2752354	+
5UTR-3CDS	ENST00000343242	ENST00000564195		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MAFK	chr7	1570534	+	KCTD5	chr16	2752354	+
5UTR-intron	ENST00000343242	ENST00000569689		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MAFK	chr7	1570534	+	KCTD5	chr16	2752354	+
In-frame	ENST00000265421	ENST00000520810		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
In-frame	ENST00000265421	ENST00000416505		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
In-frame	ENST00000265421	ENST00000519735		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
In-frame	ENST00000265421	ENST00000520835		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5CDS-intron	ENST00000265421	ENST00000379708		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5CDS-intron	ENST00000265421	ENST00000518983		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5CDS-intron	ENST00000265421	ENST00000522147		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5CDS-intron	ENST00000265421	ENST00000522785		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-3CDS	ENST00000538005	ENST00000520810		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-3CDS	ENST00000538005	ENST00000416505		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-3CDS	ENST00000538005	ENST00000519735		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-3CDS	ENST00000538005	ENST00000520835		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-intron	ENST00000538005	ENST00000379708		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-intron	ENST00000538005	ENST00000518983		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-intron	ENST00000538005	ENST00000522147		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-intron	ENST00000538005	ENST00000522785		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000530566	ENST00000520810		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000530566	ENST00000416505		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000530566	ENST00000519735		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000530566	ENST00000520835		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000530566	ENST00000379708		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000530566	ENST00000518983		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000530566	ENST00000522147		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000530566	ENST00000522785		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000521492	ENST00000520810		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000521492	ENST00000416505		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000521492	ENST00000519735		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-3CDS	ENST00000521492	ENST00000520835		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000521492	ENST00000379708		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000521492	ENST00000518983		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000521492	ENST00000522147		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
intron-intron	ENST00000521492	ENST00000522785		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	POLB	chr8	42202537	+	IKBKB	chr8	42166419	+
5UTR-3CDS	ENST00000444397	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000444397	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-intron	ENST00000444397	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000360694	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000360694	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-intron	ENST00000360694	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000418635	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000418635	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-intron	ENST00000418635	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
Frame-shit	ENST00000448077	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
Frame-shit	ENST00000448077	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5CDS-intron	ENST00000448077	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000337400	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000337400	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-intron	ENST00000337400	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000311565	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-3CDS	ENST00000311565	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
5UTR-intron	ENST00000311565	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
intron-3CDS	ENST00000540939	ENST00000360359		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
intron-3CDS	ENST00000540939	ENST00000535627		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
intron-intron	ENST00000540939	ENST00000470698		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	PPARD	chr6	35314927	+	ANKS1A	chr6	34949467	+
intron-3CDS	ENST00000458477	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000458477	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000458477	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000228307	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000228307	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000228307	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000424649	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000424649	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000424649	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000397506	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000397506	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000397506	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000536957	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000536957	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000536957	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000267257	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000267257	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000267257	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000538144	ENST00000308366		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000538144	ENST00000423423		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000538144	ENST00000549767		TCGA	RV	ESCA	TCGA-L5-A891-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000437508	ENST00000506823		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
Frame-shit	ENST00000437508	ENST00000508122		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
5CDS-3UTR	ENST00000437508	ENST00000457021		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
5CDS-intron	ENST00000437508	ENST00000511251		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
intron-3CDS	ENST00000494872	ENST00000506823		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
intron-3CDS	ENST00000494872	ENST00000508122		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
intron-3UTR	ENST00000494872	ENST00000457021		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
intron-intron	ENST00000494872	ENST00000511251		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
Frame-shit	ENST00000338700	ENST00000506823		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
Frame-shit	ENST00000338700	ENST00000508122		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
5CDS-3UTR	ENST00000338700	ENST00000457021		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
5CDS-intron	ENST00000338700	ENST00000511251		TCGA	RV	ESCA	TCGA-ZR-A9CJ-01B	TRIM2	chr4	154237151	+	GALNTL6	chr4	173232765	+
In-frame	ENST00000547776	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5CDS-intron	ENST00000547776	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5CDS-intron	ENST00000547776	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
In-frame	ENST00000329257	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5CDS-intron	ENST00000329257	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5CDS-intron	ENST00000329257	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5UTR-3CDS	ENST00000547010	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5UTR-intron	ENST00000547010	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5UTR-intron	ENST00000547010	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000341752	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000341752	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000341752	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000549558	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000549558	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000549558	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000550693	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000550693	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000550693	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000549025	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000549025	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000549025	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000549493	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000549493	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000549493	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000547446	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000547446	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000547446	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000333732	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000333732	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000333732	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000546568	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000546568	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000546568	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000332712	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000332712	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000332712	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000546960	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000546960	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000546960	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-3CDS	ENST00000550833	ENST00000279907		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000550833	ENST00000356828		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
intron-intron	ENST00000550833	ENST00000545232		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	ANKS1B	chr12	100377882	-	UHRF1BP1L	chr12	100444096	-
5CDS-5UTR	ENST00000370033	ENST00000361198		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
5CDS-5UTR	ENST00000370033	ENST00000425280		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
5CDS-5UTR	ENST00000370033	ENST00000490751		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000311122	ENST00000361198		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000311122	ENST00000425280		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000311122	ENST00000490751		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000495001	ENST00000361198		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000495001	ENST00000425280		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000495001	ENST00000490751		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	C10orf76	chr10	103699620	-	LDB1	chr10	103871293	-
5CDS-5UTR	ENST00000265036	ENST00000508821		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000265036	ENST00000425382		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000265036	ENST00000438340		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000265036	ENST00000505959		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000453022	ENST00000508821		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000453022	ENST00000425382		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000453022	ENST00000438340		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000453022	ENST00000505959		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000545085	ENST00000508821		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000545085	ENST00000425382		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000545085	ENST00000438340		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000545085	ENST00000505959		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000509006	ENST00000508821		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000509006	ENST00000425382		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000509006	ENST00000438340		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000509006	ENST00000505959		TCGA	RV	ESCA	TCGA-VR-AA7D-01A	DEPDC1B	chr5	59995873	-	ELOVL7	chr5	60083258	-
5CDS-intron	ENST00000262809	ENST00000591142		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000262809	ENST00000591601		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000262809	ENST00000309340		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000262809	ENST00000250896		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-5UTR	ENST00000262809	ENST00000541165		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000262809	ENST00000591588		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000262809	ENST00000588014		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000596124	ENST00000591142		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000596124	ENST00000591601		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000596124	ENST00000309340		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000596124	ENST00000250896		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-5UTR	ENST00000596124	ENST00000541165		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000596124	ENST00000591588		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
5CDS-intron	ENST00000596124	ENST00000588014		TCGA	RV	ESCA	TCGA-L5-A891-01A	ELL	chr19	18569015	-	MKNK2	chr19	2046690	-
In-frame	ENST00000340736	ENST00000307751		TCGA	RV	ESCA	TCGA-L5-A891-01A	LPHN1	chr19	14288343	-	LGALS4	chr19	39299588	-
5CDS-intron	ENST00000340736	ENST00000597803		TCGA	RV	ESCA	TCGA-L5-A891-01A	LPHN1	chr19	14288343	-	LGALS4	chr19	39299588	-
In-frame	ENST00000361434	ENST00000307751		TCGA	RV	ESCA	TCGA-L5-A891-01A	LPHN1	chr19	14288343	-	LGALS4	chr19	39299588	-
5CDS-intron	ENST00000361434	ENST00000597803		TCGA	RV	ESCA	TCGA-L5-A891-01A	LPHN1	chr19	14288343	-	LGALS4	chr19	39299588	-
intron-3CDS	ENST00000591528	ENST00000307751		TCGA	RV	ESCA	TCGA-L5-A891-01A	LPHN1	chr19	14288343	-	LGALS4	chr19	39299588	-
intron-intron	ENST00000591528	ENST00000597803		TCGA	RV	ESCA	TCGA-L5-A891-01A	LPHN1	chr19	14288343	-	LGALS4	chr19	39299588	-
3UTR-3CDS	ENST00000522012	ENST00000262895		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
3UTR-3CDS	ENST00000522012	ENST00000593562		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
3UTR-3CDS	ENST00000522012	ENST00000301218		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000518454	ENST00000262895		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000518454	ENST00000593562		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000518454	ENST00000301218		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000265806	ENST00000262895		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000265806	ENST00000593562		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000265806	ENST00000301218		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000411463	ENST00000262895		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000411463	ENST00000593562		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000411463	ENST00000301218		TCGA	RV	ESCA	TCGA-L5-A891-01A	R3HCC1	chr8	23147982	+	GRIK5	chr19	42526506	-
In-frame	ENST00000176763	ENST00000393792		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	STK10	chr5	171544485	-	UBTD2	chr5	171661362	-
intron-3CDS	ENST00000517775	ENST00000393792		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	STK10	chr5	171544485	-	UBTD2	chr5	171661362	-
Frame-shit	ENST00000289119	ENST00000592179		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
Frame-shit	ENST00000289119	ENST00000322980		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
5CDS-intron	ENST00000289119	ENST00000585908		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
5CDS-intron	ENST00000289119	ENST00000284207		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
5CDS-intron	ENST00000289119	ENST00000586511		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000580981	ENST00000592179		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000580981	ENST00000322980		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000580981	ENST00000585908		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000580981	ENST00000284207		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000580981	ENST00000586511		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000578270	ENST00000592179		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000578270	ENST00000322980		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000578270	ENST00000585908		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000578270	ENST00000284207		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000578270	ENST00000586511		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000579875	ENST00000592179		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000579875	ENST00000322980		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000579875	ENST00000585908		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000579875	ENST00000284207		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000579875	ENST00000586511		TCGA	RV	ESCA	TCGA-L5-A893-01A	ABHD3	chr18	19244079	-	ANKRD29	chr18	21214113	-
3UTR-3CDS	ENST00000459979	ENST00000409900		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
3UTR-5UTR	ENST00000459979	ENST00000488080		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
3UTR-5UTR	ENST00000459979	ENST00000409156		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
3UTR-5UTR	ENST00000459979	ENST00000295497		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
3UTR-5UTR	ENST00000459979	ENST00000409597		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-3CDS	ENST00000468418	ENST00000409900		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000468418	ENST00000488080		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000468418	ENST00000409156		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000468418	ENST00000295497		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000468418	ENST00000409597		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-3CDS	ENST00000410016	ENST00000409900		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000410016	ENST00000488080		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000410016	ENST00000409156		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000410016	ENST00000295497		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000410016	ENST00000409597		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-3CDS	ENST00000249440	ENST00000409900		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000249440	ENST00000488080		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000249440	ENST00000409156		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000249440	ENST00000295497		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
intron-5UTR	ENST00000249440	ENST00000409597		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	HOXD3	chr2	177001727	+	CHN1	chr2	175677210	-
5CDS-intron	ENST00000435030	ENST00000487143		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
5CDS-intron	ENST00000435030	ENST00000355999		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
intron-intron	ENST00000414838	ENST00000487143		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
intron-intron	ENST00000414838	ENST00000355999		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
intron-intron	ENST00000464066	ENST00000487143		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
intron-intron	ENST00000464066	ENST00000355999		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
intron-intron	ENST00000397413	ENST00000487143		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
intron-intron	ENST00000397413	ENST00000355999		TCGA	RV	ESCA	TCGA-IG-A3YB-01A	KIF5C	chr2	149633312	+	STK39	chr2	169038600	-
In-frame	ENST00000344610	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000344610	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000344610	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000344610	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000344610	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000344610	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371059	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371059	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371059	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371059	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371059	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371059	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371060	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371060	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371060	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371060	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371060	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371060	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000349533	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000349533	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000349533	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000349533	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000349533	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000349533	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000406510	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000406510	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000406510	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000406510	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000406510	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000406510	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
3UTR-3CDS	ENST00000462765	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
3UTR-3CDS	ENST00000462765	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
3UTR-3CDS	ENST00000462765	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
3UTR-3CDS	ENST00000462765	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
3UTR-3CDS	ENST00000462765	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
3UTR-3CDS	ENST00000462765	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371058	ENST00000464356		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371058	ENST00000348159		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371058	ENST00000353795		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371058	ENST00000340875		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371058	ENST00000368240		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
In-frame	ENST00000371058	ENST00000360595		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	LEPR	chr1	66070920	+	MEF2D	chr1	156438812	-
Frame-shit	ENST00000293328	ENST00000264657		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	STAT5B	chr17	40354358	-	STAT3	chr17	40477079	-
Frame-shit	ENST00000293328	ENST00000585517		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	STAT5B	chr17	40354358	-	STAT3	chr17	40477079	-
Frame-shit	ENST00000293328	ENST00000389272		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	STAT5B	chr17	40354358	-	STAT3	chr17	40477079	-
Frame-shit	ENST00000293328	ENST00000588969		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	STAT5B	chr17	40354358	-	STAT3	chr17	40477079	-
Frame-shit	ENST00000293328	ENST00000404395		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	STAT5B	chr17	40354358	-	STAT3	chr17	40477079	-
5CDS-intron	ENST00000293328	ENST00000590776		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	STAT5B	chr17	40354358	-	STAT3	chr17	40477079	-
In-frame	ENST00000372084	ENST00000361249		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	TESK2	chr1	45851584	-	C8A	chr1	57349154	+
Frame-shit	ENST00000372086	ENST00000361249		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	TESK2	chr1	45851584	-	C8A	chr1	57349154	+
Frame-shit	ENST00000341771	ENST00000361249		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	TESK2	chr1	45851584	-	C8A	chr1	57349154	+
intron-3CDS	ENST00000486676	ENST00000361249		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	TESK2	chr1	45851584	-	C8A	chr1	57349154	+
Frame-shit	ENST00000538496	ENST00000361249		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	TESK2	chr1	45851584	-	C8A	chr1	57349154	+
intron-3CDS	ENST00000451835	ENST00000361249		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	TESK2	chr1	45851584	-	C8A	chr1	57349154	+
Frame-shit	ENST00000394670	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000394670	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000321233	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000321233	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000394673	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000394673	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000341711	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000341711	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000342555	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000342555	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000577908	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000577908	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
intron-3CDS	ENST00000584416	ENST00000424789		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
intron-3CDS	ENST00000584416	ENST00000389520		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	ZNF207	chr17	30696764	+	TANC2	chr17	61476182	+
Frame-shit	ENST00000265299	ENST00000265395		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	FAM188B	chr7	30821828	+	HIBADH	chr7	27672064	-
Frame-shit	ENST00000368226	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368226	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000368227	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368227	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000532331	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000532331	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000368213	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368213	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000368210	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368210	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000368215	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368215	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
Frame-shit	ENST00000368207	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-intron	ENST00000368207	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5UTR-3CDS	ENST00000524481	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5UTR-intron	ENST00000524481	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
intron-3CDS	ENST00000525459	ENST00000368149		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
intron-intron	ENST00000525459	ENST00000463225		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	ARHGAP18	chr6	129939997	-
5CDS-5UTR	ENST00000251849	ENST00000339137		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000251849	ENST00000376001		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000251849	ENST00000469914		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000442415	ENST00000339137		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000442415	ENST00000376001		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000442415	ENST00000469914		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000534997	ENST00000339137		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000534997	ENST00000376001		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000534997	ENST00000469914		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000542177	ENST00000339137		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000542177	ENST00000376001		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
5CDS-5UTR	ENST00000542177	ENST00000469914		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12632297	-	C9orf153	chr9	88844544	-
In-frame	ENST00000533211	ENST00000393958		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
In-frame	ENST00000533211	ENST00000393960		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
In-frame	ENST00000533211	ENST00000355677		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000533211	ENST00000524491		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000533211	ENST00000529047		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000533211	ENST00000393955		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000533211	ENST00000528224		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
Frame-shit	ENST00000309996	ENST00000393958		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
Frame-shit	ENST00000309996	ENST00000393960		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
Frame-shit	ENST00000309996	ENST00000355677		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000309996	ENST00000524491		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000309996	ENST00000529047		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000309996	ENST00000393955		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000309996	ENST00000528224		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
In-frame	ENST00000529997	ENST00000393958		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
In-frame	ENST00000529997	ENST00000393960		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
In-frame	ENST00000529997	ENST00000355677		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000529997	ENST00000524491		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000529997	ENST00000529047		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000529997	ENST00000393955		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
5CDS-intron	ENST00000529997	ENST00000528224		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	SPTBN2	chr11	66488555	-	PC	chr11	66639630	-
Frame-shit	ENST00000356083	ENST00000374126		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	COL27A1	chr9	116999995	+	ZNF618	chr9	116750601	+
Frame-shit	ENST00000356083	ENST00000288466		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	COL27A1	chr9	116999995	+	ZNF618	chr9	116750601	+
5CDS-intron	ENST00000356083	ENST00000470105		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	COL27A1	chr9	116999995	+	ZNF618	chr9	116750601	+
intron-3CDS	ENST00000477421	ENST00000374126		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	COL27A1	chr9	116999995	+	ZNF618	chr9	116750601	+
intron-3CDS	ENST00000477421	ENST00000288466		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	COL27A1	chr9	116999995	+	ZNF618	chr9	116750601	+
intron-intron	ENST00000477421	ENST00000470105		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	COL27A1	chr9	116999995	+	ZNF618	chr9	116750601	+
intron-3CDS	ENST00000338205	ENST00000374287		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000338205	ENST00000374283		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000338205	ENST00000394777		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000338205	ENST00000394779		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000338205	ENST00000318737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000259335	ENST00000374287		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000259335	ENST00000374283		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000259335	ENST00000394777		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000259335	ENST00000394779		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000259335	ENST00000318737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000374378	ENST00000374287		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000374378	ENST00000374283		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000374378	ENST00000394777		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000374378	ENST00000394779		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000374378	ENST00000318737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000465499	ENST00000374287		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000465499	ENST00000374283		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000465499	ENST00000394777		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000465499	ENST00000394779		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
intron-3CDS	ENST00000465499	ENST00000318737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	KIAA0368	chr9	114235177	-	C9orf84	chr9	114510479	-
5CDS-intron	ENST00000298249	ENST00000315289		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000298249	ENST00000395265		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000298249	ENST00000373789		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000298249	ENST00000395260		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000373758	ENST00000315289		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000373758	ENST00000395265		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000373758	ENST00000373789		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
5CDS-intron	ENST00000373758	ENST00000395260		TCGA	RV	ESCA	TCGA-L5-A8NR-01A	REEP3	chr10	65359043	+	RTKN2	chr10	64005816	-
Frame-shit	ENST00000260947	ENST00000437635		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	BARD1	chr2	215645284	-	C6orf222	chr6	36291967	-
In-frame	ENST00000449967	ENST00000437635		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	BARD1	chr2	215645284	-	C6orf222	chr6	36291967	-
intron-3CDS	ENST00000432456	ENST00000437635		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	BARD1	chr2	215645284	-	C6orf222	chr6	36291967	-
intron-3CDS	ENST00000471787	ENST00000437635		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	BARD1	chr2	215645284	-	C6orf222	chr6	36291967	-
5UTR-3CDS	ENST00000449309	ENST00000222982		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	FAM200A	chr7	99149477	-	CYP3A5	chr7	99264688	-
5UTR-3CDS	ENST00000449309	ENST00000343703		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	FAM200A	chr7	99149477	-	CYP3A5	chr7	99264688	-
5UTR-3UTR	ENST00000449309	ENST00000339843		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	FAM200A	chr7	99149477	-	CYP3A5	chr7	99264688	-
5UTR-5UTR	ENST00000449309	ENST00000480723		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	FAM200A	chr7	99149477	-	CYP3A5	chr7	99264688	-
5UTR-intron	ENST00000449309	ENST00000439761		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	FAM200A	chr7	99149477	-	CYP3A5	chr7	99264688	-
5UTR-5UTR	ENST00000591471	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000591471	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000591471	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000591471	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000591471	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000589218	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000589218	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000589218	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000589218	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
intron-5UTR	ENST00000589218	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000544914	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000544914	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000544914	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000544914	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5UTR-5UTR	ENST00000544914	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591417	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591417	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591417	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591417	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591417	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000592168	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000592168	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000592168	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000592168	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000592168	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392153	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392153	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392153	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392153	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000392153	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589392	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589392	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589392	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589392	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000589392	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000324411	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000324411	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000324411	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000324411	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000324411	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591259	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591259	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591259	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591259	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591259	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000541583	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000541583	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000541583	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000541583	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000541583	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591134	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591134	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591134	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591134	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000591134	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000586897	ENST00000599715		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000586897	ENST00000006724		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000586897	ENST00000338196		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000586897	ENST00000401731		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
5CDS-5UTR	ENST00000586897	ENST00000602225		TCGA	RV	ESCA	TCGA-L5-A891-01A	HKR1	chr19	37838774	+	CEACAM7	chr19	42191152	-
intron-3CDS	ENST00000261596	ENST00000315677		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000261596	ENST00000581527		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000261596	ENST00000400147		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000400149		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000400155		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000400150		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000584874		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000534970		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000539435		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000581699		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000400145		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000515196		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000261596	ENST00000478161		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000581568	ENST00000315677		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000581568	ENST00000581527		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000581568	ENST00000400147		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000400149		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000400155		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000400150		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000584874		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000534970		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000539435		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000581699		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000400145		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000515196		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
intron-intron	ENST00000581568	ENST00000478161		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	LPIN2	chr18	3013085	-	DLGAP1	chr18	3582246	-
In-frame	ENST00000290650	ENST00000220420		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	UBR1	chr15	43290366	-	TGM5	chr15	43552777	-
In-frame	ENST00000290650	ENST00000349114		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	UBR1	chr15	43290366	-	TGM5	chr15	43552777	-
3UTR-3CDS	ENST00000382177	ENST00000220420		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	UBR1	chr15	43290366	-	TGM5	chr15	43552777	-
3UTR-3CDS	ENST00000382177	ENST00000349114		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	UBR1	chr15	43290366	-	TGM5	chr15	43552777	-
intron-3CDS	ENST00000568782	ENST00000220420		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	UBR1	chr15	43290366	-	TGM5	chr15	43552777	-
intron-3CDS	ENST00000568782	ENST00000349114		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	UBR1	chr15	43290366	-	TGM5	chr15	43552777	-
In-frame	ENST00000341657	ENST00000389857		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000341657	ENST00000331194		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000341657	ENST00000389856		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000341657	ENST00000553403		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000341657	ENST00000554165		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
In-frame	ENST00000570535	ENST00000389857		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000570535	ENST00000331194		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000570535	ENST00000389856		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000570535	ENST00000553403		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000570535	ENST00000554165		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
In-frame	ENST00000574367	ENST00000389857		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000574367	ENST00000331194		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000574367	ENST00000389856		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000574367	ENST00000553403		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000574367	ENST00000554165		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
intron-3CDS	ENST00000573722	ENST00000389857		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
intron-intron	ENST00000573722	ENST00000331194		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
intron-intron	ENST00000573722	ENST00000389856		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
intron-intron	ENST00000573722	ENST00000553403		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
intron-intron	ENST00000573722	ENST00000554165		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
In-frame	ENST00000433651	ENST00000389857		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000433651	ENST00000331194		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000433651	ENST00000389856		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000433651	ENST00000553403		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-intron	ENST00000433651	ENST00000554165		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ANKFY1	chr17	4145551	-	CCDC88C	chr14	91757428	-
5CDS-5UTR	ENST00000264033	ENST00000361417		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBL	chr11	119077322	+	PHLDB1	chr11	118484531	+
5CDS-5UTR	ENST00000264033	ENST00000356063		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBL	chr11	119077322	+	PHLDB1	chr11	118484531	+
5CDS-intron	ENST00000264033	ENST00000534672		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBL	chr11	119077322	+	PHLDB1	chr11	118484531	+
5CDS-intron	ENST00000264033	ENST00000527898		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBL	chr11	119077322	+	PHLDB1	chr11	118484531	+
5CDS-intron	ENST00000264033	ENST00000524713		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBL	chr11	119077322	+	PHLDB1	chr11	118484531	+
5CDS-5UTR	ENST00000003100	ENST00000265742		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	CYP51A1	chr7	91763487	-	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000003100	ENST00000486698		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	CYP51A1	chr7	91763487	-	ANKIB1	chr7	91924203	+
intron-5UTR	ENST00000450723	ENST00000265742		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	CYP51A1	chr7	91763487	-	ANKIB1	chr7	91924203	+
intron-intron	ENST00000450723	ENST00000486698		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	CYP51A1	chr7	91763487	-	ANKIB1	chr7	91924203	+
In-frame	ENST00000221801	ENST00000520965		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	FBL	chr19	40327196	-	ZNF829	chr19	37406153	-
5CDS-5UTR	ENST00000221801	ENST00000391711		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	FBL	chr19	40327196	-	ZNF829	chr19	37406153	-
5UTR-3CDS	ENST00000593503	ENST00000520965		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	FBL	chr19	40327196	-	ZNF829	chr19	37406153	-
5UTR-5UTR	ENST00000593503	ENST00000391711		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	FBL	chr19	40327196	-	ZNF829	chr19	37406153	-
Frame-shit	ENST00000313735	ENST00000354329		TCGA	RV	ESCA	TCGA-L5-A4OH-01A	NOS2	chr17	26125726	-	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000313735	ENST00000529578		TCGA	RV	ESCA	TCGA-L5-A4OH-01A	NOS2	chr17	26125726	-	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000313735	ENST00000533112		TCGA	RV	ESCA	TCGA-L5-A4OH-01A	NOS2	chr17	26125726	-	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000313735	ENST00000531253		TCGA	RV	ESCA	TCGA-L5-A4OH-01A	NOS2	chr17	26125726	-	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000313735	ENST00000527372		TCGA	RV	ESCA	TCGA-L5-A4OH-01A	NOS2	chr17	26125726	-	MYO18A	chr17	27449271	-
Frame-shit	ENST00000357387	ENST00000263408		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	RICTOR	chr5	39074213	-	C9	chr5	39342298	-
5CDS-5UTR	ENST00000357387	ENST00000509186		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	RICTOR	chr5	39074213	-	C9	chr5	39342298	-
Frame-shit	ENST00000296782	ENST00000263408		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	RICTOR	chr5	39074213	-	C9	chr5	39342298	-
5CDS-5UTR	ENST00000296782	ENST00000509186		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	RICTOR	chr5	39074213	-	C9	chr5	39342298	-
intron-3CDS	ENST00000503698	ENST00000263408		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	RICTOR	chr5	39074213	-	C9	chr5	39342298	-
intron-5UTR	ENST00000503698	ENST00000509186		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	RICTOR	chr5	39074213	-	C9	chr5	39342298	-
5UTR-5UTR	ENST00000348405	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000348405	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000348405	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000348405	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000513858	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000513858	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000513858	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000513858	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000395310	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000395310	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000395310	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000395310	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000443462	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000443462	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000443462	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000443462	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000509142	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000509142	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000509142	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000509142	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000326950	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000326950	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000326950	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000326950	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000432794	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000432794	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000432794	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000432794	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000311785	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000311785	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000311785	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000311785	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000448323	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000448323	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000448323	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000448323	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000505472	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000505472	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000505472	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000505472	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000500777	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000500777	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000500777	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000500777	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508502	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508502	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508502	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508502	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000355196	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000355196	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000355196	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000355196	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000264405	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000264405	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000264405	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000264405	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000505984	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000505984	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000505984	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000505984	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508479	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508479	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508479	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000508479	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000436790	ENST00000505489		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000436790	ENST00000321945		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000436790	ENST00000506553		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000436790	ENST00000515303		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SEC31A	chr4	83812241	-	FAM175A	chr4	84403397	-
intron-3CDS	ENST00000460783	ENST00000400485		TCGA	RV	ESCA	TCGA-L5-A891-01A	SIM2	chr21	38103452	+	MORC3	chr21	37721609	+
intron-3UTR	ENST00000460783	ENST00000487909		TCGA	RV	ESCA	TCGA-L5-A891-01A	SIM2	chr21	38103452	+	MORC3	chr21	37721609	+
Frame-shit	ENST00000290399	ENST00000400485		TCGA	RV	ESCA	TCGA-L5-A891-01A	SIM2	chr21	38103452	+	MORC3	chr21	37721609	+
5CDS-3UTR	ENST00000290399	ENST00000487909		TCGA	RV	ESCA	TCGA-L5-A891-01A	SIM2	chr21	38103452	+	MORC3	chr21	37721609	+
Frame-shit	ENST00000430056	ENST00000400485		TCGA	RV	ESCA	TCGA-L5-A891-01A	SIM2	chr21	38103452	+	MORC3	chr21	37721609	+
5CDS-3UTR	ENST00000430056	ENST00000487909		TCGA	RV	ESCA	TCGA-L5-A891-01A	SIM2	chr21	38103452	+	MORC3	chr21	37721609	+
5UTR-3CDS	ENST00000257663	ENST00000336926		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	TMEM60	chr7	77427571	-	HIP1	chr7	75178299	-
5UTR-3CDS	ENST00000257663	ENST00000434438		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	TMEM60	chr7	77427571	-	HIP1	chr7	75178299	-
5UTR-intron	ENST00000257663	ENST00000479835		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	TMEM60	chr7	77427571	-	HIP1	chr7	75178299	-
In-frame	ENST00000317204	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000317204	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
5CDS-intron	ENST00000317204	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000527886	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000527886	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
5CDS-intron	ENST00000527886	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000525159	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000525159	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
5CDS-intron	ENST00000525159	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000263646	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000263646	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
5CDS-intron	ENST00000263646	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000542915	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
In-frame	ENST00000542915	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
5CDS-intron	ENST00000542915	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
intron-3CDS	ENST00000527938	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
intron-3CDS	ENST00000527938	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
intron-intron	ENST00000527938	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
intron-3CDS	ENST00000528719	ENST00000529681		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
intron-3CDS	ENST00000528719	ENST00000447027		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
intron-intron	ENST00000528719	ENST00000531082		TCGA	RV	ESCA	TCGA-2H-A9GI-01A	TOLLIP	chr11	1307232	-	MUC5B	chr11	1273573	+
5CDS-5UTR	ENST00000352645	ENST00000394253		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000352645	ENST00000373010		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000352645	ENST00000373006		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000352645	ENST00000297229		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-intron	ENST00000352645	ENST00000373009		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000351589	ENST00000394253		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000351589	ENST00000373010		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000351589	ENST00000373006		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000351589	ENST00000297229		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
5CDS-intron	ENST00000351589	ENST00000373009		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	ZC3H7B	chr22	41728231	+	USP49	chr6	41774749	-
In-frame	ENST00000066544	ENST00000421975		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000066544	ENST00000314144		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000066544	ENST00000436961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000531206	ENST00000421975		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000531206	ENST00000314144		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000531206	ENST00000436961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
5UTR-3CDS	ENST00000446365	ENST00000421975		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
5UTR-3CDS	ENST00000446365	ENST00000314144		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
5UTR-3CDS	ENST00000446365	ENST00000436961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000527547	ENST00000421975		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000527547	ENST00000314144		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
In-frame	ENST00000527547	ENST00000436961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
intron-3CDS	ENST00000528748	ENST00000421975		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
intron-3CDS	ENST00000528748	ENST00000314144		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
intron-3CDS	ENST00000528748	ENST00000436961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CDC27	chr17	45266512	-	CCT6B	chr17	33281618	-
5UTR-3CDS	ENST00000298784	ENST00000346932		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298784	ENST00000350527		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298784	ENST00000308713		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298784	ENST00000537485		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-intron	ENST00000298784	ENST00000562159		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298786	ENST00000346932		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298786	ENST00000350527		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298786	ENST00000308713		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-3CDS	ENST00000298786	ENST00000537485		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
5UTR-intron	ENST00000298786	ENST00000562159		TCGA	RV	ESCA	TCGA-V5-AASX-01A	FAM35A	chr10	88856746	+	SEZ6L2	chr16	29897070	-
Frame-shit	ENST00000392562	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392562	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
In-frame	ENST00000392562	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392562	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5CDS-3UTR	ENST00000392562	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000316804	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000316804	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
In-frame	ENST00000316804	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000316804	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5CDS-3UTR	ENST00000316804	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000316615	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000316615	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
In-frame	ENST00000316615	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000316615	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5CDS-3UTR	ENST00000316615	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392563	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
In-frame	ENST00000392563	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392563	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392563	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5CDS-3UTR	ENST00000392563	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392564	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
In-frame	ENST00000392564	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392564	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
Frame-shit	ENST00000392564	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5CDS-3UTR	ENST00000392564	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
intron-3CDS	ENST00000578961	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
intron-3CDS	ENST00000578961	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
intron-3CDS	ENST00000578961	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
intron-3CDS	ENST00000578961	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
intron-3UTR	ENST00000578961	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5UTR-3CDS	ENST00000462266	ENST00000375471		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5UTR-3CDS	ENST00000462266	ENST00000537499		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5UTR-3CDS	ENST00000462266	ENST00000413717		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5UTR-3CDS	ENST00000462266	ENST00000536552		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5UTR-3UTR	ENST00000462266	ENST00000460293		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	GRB2	chr17	73317740	-	PADI1	chr1	17570505	+
5CDS-5UTR	ENST00000408982	ENST00000318833		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	RABEP1	chr17	5235447	+	ZFP3	chr17	4994792	+
5CDS-5UTR	ENST00000262477	ENST00000318833		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	RABEP1	chr17	5235447	+	ZFP3	chr17	4994792	+
5CDS-5UTR	ENST00000537505	ENST00000318833		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	RABEP1	chr17	5235447	+	ZFP3	chr17	4994792	+
5CDS-5UTR	ENST00000546142	ENST00000318833		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	RABEP1	chr17	5235447	+	ZFP3	chr17	4994792	+
5CDS-5UTR	ENST00000341923	ENST00000318833		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	RABEP1	chr17	5235447	+	ZFP3	chr17	4994792	+
3UTR-5UTR	ENST00000570487	ENST00000318833		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	RABEP1	chr17	5235447	+	ZFP3	chr17	4994792	+
intron-3CDS	ENST00000336095	ENST00000215829		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
intron-3CDS	ENST00000336095	ENST00000402849		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
5UTR-3CDS	ENST00000358395	ENST00000215829		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
5UTR-3CDS	ENST00000358395	ENST00000402849		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
intron-3CDS	ENST00000432261	ENST00000215829		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
intron-3CDS	ENST00000432261	ENST00000402849		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
5UTR-3CDS	ENST00000545616	ENST00000215829		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
5UTR-3CDS	ENST00000545616	ENST00000402849		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RNF24	chr20	3996084	-	SNRPD3	chr22	24963952	+
In-frame	ENST00000508802	ENST00000381967		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-5UTR	ENST00000508802	ENST00000544359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-5UTR	ENST00000508802	ENST00000537241		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
In-frame	ENST00000261439	ENST00000381967		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-5UTR	ENST00000261439	ENST00000544359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-5UTR	ENST00000261439	ENST00000537241		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
In-frame	ENST00000402522	ENST00000381967		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-5UTR	ENST00000402522	ENST00000544359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-5UTR	ENST00000402522	ENST00000537241		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
intron-3CDS	ENST00000407365	ENST00000381967		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
intron-5UTR	ENST00000407365	ENST00000544359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
intron-5UTR	ENST00000407365	ENST00000537241		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	TBC1D1	chr4	37904133	+	PGM2	chr4	37831586	+
5CDS-3UTR	ENST00000211998	ENST00000593699		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000211998	ENST00000372499		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000211998	ENST00000496424		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372755	ENST00000593699		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372755	ENST00000372499		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000372755	ENST00000496424		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
3UTR-3UTR	ENST00000478896	ENST00000593699		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
3UTR-3UTR	ENST00000478896	ENST00000372499		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
3UTR-intron	ENST00000478896	ENST00000496424		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000417648	ENST00000593699		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000417648	ENST00000372499		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000417648	ENST00000496424		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	VCL	chr10	75802911	+	C10orf11	chr10	77795766	+
Frame-shit	ENST00000375687	ENST00000340513		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000375687	ENST00000300403		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000542461	ENST00000340513		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000542461	ENST00000300403		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000375689	ENST00000340513		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000375689	ENST00000300403		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000306058	ENST00000340513		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000306058	ENST00000300403		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
3UTR-3CDS	ENST00000470145	ENST00000340513		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
3UTR-3CDS	ENST00000470145	ENST00000300403		TCGA	RV	ESCA	TCGA-L5-A891-01A	ASXL1	chr20	30956926	+	TPX2	chr20	30359363	+
Frame-shit	ENST00000350061	ENST00000418458		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000350061	ENST00000394799		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
5CDS-intron	ENST00000350061	ENST00000460073		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000288139	ENST00000418458		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000288139	ENST00000394799		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
5CDS-intron	ENST00000288139	ENST00000460073		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000422281	ENST00000418458		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000422281	ENST00000394799		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
5CDS-intron	ENST00000422281	ENST00000460073		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
intron-3CDS	ENST00000498251	ENST00000418458		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
intron-3CDS	ENST00000498251	ENST00000394799		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
intron-intron	ENST00000498251	ENST00000460073		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000540742	ENST00000418458		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
Frame-shit	ENST00000540742	ENST00000394799		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
5CDS-intron	ENST00000540742	ENST00000460073		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
intron-3CDS	ENST00000544977	ENST00000418458		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
intron-3CDS	ENST00000544977	ENST00000394799		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
intron-intron	ENST00000544977	ENST00000460073		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CACNA1D	chr3	53804579	+	GNL3	chr3	52724608	+
In-frame	ENST00000361183	ENST00000248600		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000361183	ENST00000359697		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000361183	ENST00000340062		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
Frame-shit	ENST00000361183	ENST00000360591		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000361183	ENST00000431581		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000361183	ENST00000451157		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
5CDS-5UTR	ENST00000361183	ENST00000460184		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000458284	ENST00000248600		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000458284	ENST00000359697		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000458284	ENST00000340062		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
Frame-shit	ENST00000458284	ENST00000360591		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000458284	ENST00000431581		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000458284	ENST00000451157		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
5CDS-5UTR	ENST00000458284	ENST00000460184		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000490693	ENST00000248600		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000490693	ENST00000359697		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000490693	ENST00000340062		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
Frame-shit	ENST00000490693	ENST00000360591		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000490693	ENST00000431581		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000490693	ENST00000451157		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
5CDS-5UTR	ENST00000490693	ENST00000460184		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-3CDS	ENST00000466023	ENST00000248600		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-3CDS	ENST00000466023	ENST00000359697		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-3CDS	ENST00000466023	ENST00000340062		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-3CDS	ENST00000466023	ENST00000360591		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-3CDS	ENST00000466023	ENST00000431581		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-3CDS	ENST00000466023	ENST00000451157		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
intron-5UTR	ENST00000466023	ENST00000460184		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	CAPZA2	chr7	116528244	+	STYXL1	chr7	75658021	-
In-frame	ENST00000397901	ENST00000389301		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
In-frame	ENST00000397901	ENST00000568369		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000397901	ENST00000567284		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000397901	ENST00000389302		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000397901	ENST00000563673		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000397901	ENST00000534992		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000397901	ENST00000543736		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
In-frame	ENST00000253475	ENST00000389301		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
In-frame	ENST00000253475	ENST00000568369		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000253475	ENST00000567284		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000253475	ENST00000389302		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000253475	ENST00000563673		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000253475	ENST00000534992		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000253475	ENST00000543736		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-3CDS	ENST00000535997	ENST00000389301		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-3CDS	ENST00000535997	ENST00000568369		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000535997	ENST00000567284		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000535997	ENST00000389302		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000535997	ENST00000563673		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000535997	ENST00000534992		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000535997	ENST00000543736		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
In-frame	ENST00000550102	ENST00000389301		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
In-frame	ENST00000550102	ENST00000568369		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000550102	ENST00000567284		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000550102	ENST00000389302		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000550102	ENST00000563673		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000550102	ENST00000534992		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5CDS-intron	ENST00000550102	ENST00000543736		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-3CDS	ENST00000547614	ENST00000389301		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-3CDS	ENST00000547614	ENST00000568369		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000547614	ENST00000567284		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000547614	ENST00000389302		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000547614	ENST00000563673		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000547614	ENST00000534992		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
5UTR-intron	ENST00000547614	ENST00000543736		TCGA	RV	ESCA	TCGA-IG-A97H-01A	CHMP1A	chr16	89723990	-	FANCA	chr16	89851372	-
In-frame	ENST00000496972	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
In-frame	ENST00000496972	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000496972	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000496972	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000496972	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000405222	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000405222	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000405222	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000405222	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000405222	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000407661	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000407661	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407661	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407661	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407661	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000406818	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000406818	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000406818	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000406818	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000406818	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000407038	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000407038	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407038	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407038	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407038	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000404103	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000404103	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000404103	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000404103	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000404103	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000407186	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000407186	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407186	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407186	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000407186	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000288642	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
Frame-shit	ENST00000288642	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000288642	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000288642	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000288642	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
intron-3CDS	ENST00000545439	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
intron-3CDS	ENST00000545439	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
intron-5UTR	ENST00000545439	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
intron-5UTR	ENST00000545439	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
intron-5UTR	ENST00000545439	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5UTR-3CDS	ENST00000472690	ENST00000435504		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5UTR-3CDS	ENST00000472690	ENST00000336112		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5UTR-5UTR	ENST00000472690	ENST00000272341		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5UTR-5UTR	ENST00000472690	ENST00000404843		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5UTR-5UTR	ENST00000472690	ENST00000497092		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	DTNB	chr2	25818955	-	ASXL2	chr2	25991737	-
5CDS-5UTR	ENST00000268182	ENST00000354377		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-intron	ENST00000268182	ENST00000558115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-5UTR	ENST00000268182	ENST00000379090		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000354377		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560738	ENST00000558115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000379090		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000354377		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560020	ENST00000558115		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000379090		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-intron	ENST00000360614	ENST00000524754		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000360614	ENST00000527106		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000360614	ENST00000318336		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000360614	ENST00000286955		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000360614	ENST00000592563		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000585374	ENST00000524754		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000585374	ENST00000527106		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000585374	ENST00000318336		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000585374	ENST00000286955		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000585374	ENST00000592563		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000593119	ENST00000524754		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000593119	ENST00000527106		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000593119	ENST00000318336		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000593119	ENST00000286955		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000593119	ENST00000592563		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5UTR-intron	ENST00000540670	ENST00000524754		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5UTR-5UTR	ENST00000540670	ENST00000527106		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5UTR-5UTR	ENST00000540670	ENST00000318336		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5UTR-intron	ENST00000540670	ENST00000286955		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5UTR-intron	ENST00000540670	ENST00000592563		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000590729	ENST00000524754		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000590729	ENST00000527106		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-5UTR	ENST00000590729	ENST00000318336		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000590729	ENST00000286955		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
5CDS-intron	ENST00000590729	ENST00000592563		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
intron-intron	ENST00000590511	ENST00000524754		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
intron-5UTR	ENST00000590511	ENST00000527106		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
intron-5UTR	ENST00000590511	ENST00000318336		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
intron-intron	ENST00000590511	ENST00000286955		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
intron-intron	ENST00000590511	ENST00000592563		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	LONP1	chr19	5714194	-	FUT6	chr19	5835088	-
intron-intron	ENST00000368357	ENST00000368416		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368357	ENST00000368417		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368357	ENST00000546092		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368357	ENST00000545433		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368357	ENST00000476571		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000392477	ENST00000368416		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000392477	ENST00000368417		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000392477	ENST00000546092		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000392477	ENST00000545433		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000392477	ENST00000476571		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000229634	ENST00000368416		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000229634	ENST00000368417		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000229634	ENST00000546092		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000229634	ENST00000545433		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000229634	ENST00000476571		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000487635	ENST00000368416		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000487635	ENST00000368417		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000487635	ENST00000546092		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000487635	ENST00000545433		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000487635	ENST00000476571		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOA7	chr6	126112213	+	NKAIN2	chr6	125112485	+
5UTR-5UTR	ENST00000257821	ENST00000396841		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	PHF21A	chr11	46142486	-	LEUTX	chr19	40275167	+
5UTR-5UTR	ENST00000323180	ENST00000396841		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	PHF21A	chr11	46142486	-	LEUTX	chr19	40275167	+
5UTR-5UTR	ENST00000418153	ENST00000396841		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	PHF21A	chr11	46142486	-	LEUTX	chr19	40275167	+
intron-5UTR	ENST00000527753	ENST00000396841		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	PHF21A	chr11	46142486	-	LEUTX	chr19	40275167	+
5UTR-3CDS	ENST00000348370	ENST00000561311		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-3CDS	ENST00000348370	ENST00000306829		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-intron	ENST00000348370	ENST00000559908		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-intron	ENST00000348370	ENST00000472902		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-3CDS	ENST00000434298	ENST00000561311		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-3CDS	ENST00000434298	ENST00000306829		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-intron	ENST00000434298	ENST00000559908		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-intron	ENST00000434298	ENST00000472902		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-3CDS	ENST00000559209	ENST00000561311		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-3CDS	ENST00000559209	ENST00000306829		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-intron	ENST00000559209	ENST00000559908		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5UTR-intron	ENST00000559209	ENST00000472902		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-3CDS	ENST00000557998	ENST00000561311		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-3CDS	ENST00000557998	ENST00000306829		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-intron	ENST00000557998	ENST00000559908		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-intron	ENST00000557998	ENST00000472902		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-3CDS	ENST00000561186	ENST00000561311		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-3CDS	ENST00000561186	ENST00000306829		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-intron	ENST00000561186	ENST00000559908		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-intron	ENST00000561186	ENST00000472902		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-3CDS	ENST00000560080	ENST00000561311		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-3CDS	ENST00000560080	ENST00000306829		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-intron	ENST00000560080	ENST00000559908		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
intron-intron	ENST00000560080	ENST00000472902		TCGA	RV	ESCA	TCGA-2H-A9GQ-01A	RNF111	chr15	59280267	+	TLN2	chr15	63084840	+
5CDS-intron	ENST00000302516	ENST00000563392		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-3UTR	ENST00000302516	ENST00000570055		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-3UTR	ENST00000302516	ENST00000563206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-3UTR	ENST00000302516	ENST00000451014		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000568625		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000288071		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000393657		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
5CDS-intron	ENST00000302516	ENST00000355992		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SF3B3	chr16	70573110	+	DDX19B	chr16	70346512	+
Frame-shit	ENST00000295951	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000295951	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000295951	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000295951	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000416870	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000416870	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000416870	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000416870	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000295952	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000295952	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000295952	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000295952	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000383718	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000383718	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-intron	ENST00000383718	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-intron	ENST00000383718	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000428312	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000428312	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000428312	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000428312	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000449503	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000449503	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000449503	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000449503	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000472546	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000472546	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-intron	ENST00000472546	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-intron	ENST00000472546	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000442599	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000442599	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-intron	ENST00000442599	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-intron	ENST00000442599	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000495364	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000495364	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000495364	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000495364	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000494088	ENST00000396153		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
Frame-shit	ENST00000494088	ENST00000371778		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000494088	ENST00000545823		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000494088	ENST00000472808		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SLMAP	chr3	57894877	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000553974	ENST00000347230		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
intron-intron	ENST00000553974	ENST00000557306		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
intron-intron	ENST00000553974	ENST00000555452		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
In-frame	ENST00000555474	ENST00000347230		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5CDS-intron	ENST00000555474	ENST00000557306		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5CDS-intron	ENST00000555474	ENST00000555452		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
In-frame	ENST00000216442	ENST00000347230		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5CDS-intron	ENST00000216442	ENST00000557306		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5CDS-intron	ENST00000216442	ENST00000555452		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5UTR-3CDS	ENST00000555431	ENST00000347230		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5UTR-intron	ENST00000555431	ENST00000557306		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5UTR-intron	ENST00000555431	ENST00000555452		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
In-frame	ENST00000554236	ENST00000347230		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5CDS-intron	ENST00000554236	ENST00000557306		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
5CDS-intron	ENST00000554236	ENST00000555452		TCGA	RV	ESCA	TCGA-L5-A4OM-01A	ATP6V1D	chr14	67826375	-	ZFYVE26	chr14	68272335	-
Frame-shit	ENST00000219789	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000219789	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000219789	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000219789	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000219789	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
intron-3CDS	ENST00000567459	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
intron-3CDS	ENST00000567459	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
intron-3CDS	ENST00000567459	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
intron-3CDS	ENST00000567459	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
intron-intron	ENST00000567459	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000561555	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000561555	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000561555	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000561555	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000561555	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000566113	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000566113	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000566113	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000566113	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000566113	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000569956	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000569956	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000569956	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000569956	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000569956	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000570016	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000570016	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000570016	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000570016	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000570016	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000563415	ENST00000346932		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000563415	ENST00000350527		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000563415	ENST00000308713		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
Frame-shit	ENST00000563415	ENST00000537485		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000563415	ENST00000562159		TCGA	RV	ESCA	TCGA-LN-A8I0-01A	CDIPT	chr16	29871902	-	SEZ6L2	chr16	29885050	-
5CDS-intron	ENST00000369851	ENST00000393709		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000496961		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000533024		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000310611		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000527072		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000420578		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000528785		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000369868		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
5CDS-intron	ENST00000369851	ENST00000430195		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	GNAI3	chr1	110129504	+	CYB561D1	chr1	110037765	+
Frame-shit	ENST00000587309	ENST00000359945		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
Frame-shit	ENST00000587309	ENST00000409122		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000587309	ENST00000409464		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000587309	ENST00000588805		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
In-frame	ENST00000438933	ENST00000359945		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
In-frame	ENST00000438933	ENST00000409122		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000438933	ENST00000409464		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000438933	ENST00000588805		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
Frame-shit	ENST00000593135	ENST00000359945		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
Frame-shit	ENST00000593135	ENST00000409122		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000593135	ENST00000409464		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000593135	ENST00000588805		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
Frame-shit	ENST00000339151	ENST00000359945		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
Frame-shit	ENST00000339151	ENST00000409122		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000339151	ENST00000409464		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000339151	ENST00000588805		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
In-frame	ENST00000590129	ENST00000359945		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
In-frame	ENST00000590129	ENST00000409122		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000590129	ENST00000409464		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
5CDS-intron	ENST00000590129	ENST00000588805		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	KIF18B	chr17	43010280	-	C17orf104	chr17	42734495	+
3UTR-5UTR	ENST00000597933	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-5UTR	ENST00000597933	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
3UTR-intron	ENST00000597933	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000602122	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-intron	ENST00000602122	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000361790	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-intron	ENST00000361790	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000360798	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-intron	ENST00000360798	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000354900	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-intron	ENST00000354900	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000347609	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-intron	ENST00000347609	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000543010		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000391721		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000339757		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000448584		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000537859		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000427260		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000538819		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-5UTR	ENST00000427250	ENST00000263437		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5CDS-intron	ENST00000427250	ENST00000586512		TCGA	RV	ESCA	TCGA-L5-A891-01A	LSR	chr19	35741562	+	NLRP2	chr19	55481367	+
5UTR-3CDS	ENST00000588552	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5UTR-3CDS	ENST00000588552	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5UTR-3CDS	ENST00000588552	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5UTR-3CDS	ENST00000588552	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5UTR-5UTR	ENST00000588552	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000262963	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000262963	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000262963	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000262963	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000262963	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000372412	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000372412	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000372412	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000372412	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000372412	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000348075	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000348075	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000348075	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000348075	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000348075	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000357368	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000357368	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000357368	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000357368	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000357368	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000353284	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000353284	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000353284	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000353284	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000353284	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000587303	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000587303	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000587303	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000587303	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000587303	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000588012	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000588012	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000588012	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000588012	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000588012	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000592099	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000592099	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000592099	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000592099	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
5CDS-5UTR	ENST00000592099	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
intron-3CDS	ENST00000590509	ENST00000590550		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
intron-3CDS	ENST00000590509	ENST00000434436		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
intron-3CDS	ENST00000590509	ENST00000592012		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
intron-3CDS	ENST00000590509	ENST00000156825		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
intron-5UTR	ENST00000590509	ENST00000585967		TCGA	RV	ESCA	TCGA-L5-A891-01A	PTPRS	chr19	5211601	-	MBD3	chr19	1582711	-
Frame-shit	ENST00000254260	ENST00000590333		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
Frame-shit	ENST00000254260	ENST00000309383		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
Frame-shit	ENST00000254260	ENST00000585418		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5CDS-intron	ENST00000254260	ENST00000326848		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5CDS-intron	ENST00000254260	ENST00000588584		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5UTR-3CDS	ENST00000400226	ENST00000590333		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5UTR-3CDS	ENST00000400226	ENST00000309383		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5UTR-3CDS	ENST00000400226	ENST00000585418		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5UTR-intron	ENST00000400226	ENST00000326848		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5UTR-intron	ENST00000400226	ENST00000588584		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
intron-3CDS	ENST00000588683	ENST00000590333		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
intron-3CDS	ENST00000588683	ENST00000309383		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
intron-3CDS	ENST00000588683	ENST00000585418		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
intron-intron	ENST00000588683	ENST00000326848		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
intron-intron	ENST00000588683	ENST00000588584		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	RHPN2	chr19	33555690	-	BRSK1	chr19	55798375	+
5UTR-3CDS	ENST00000413852	ENST00000327697		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5UTR-3CDS	ENST00000413852	ENST00000432042		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5UTR-intron	ENST00000413852	ENST00000433785		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5UTR-intron	ENST00000413852	ENST00000497099		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
In-frame	ENST00000002829	ENST00000327697		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
In-frame	ENST00000002829	ENST00000432042		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5CDS-intron	ENST00000002829	ENST00000433785		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5CDS-intron	ENST00000002829	ENST00000497099		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
In-frame	ENST00000434342	ENST00000327697		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
In-frame	ENST00000434342	ENST00000432042		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5CDS-intron	ENST00000434342	ENST00000433785		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
5CDS-intron	ENST00000434342	ENST00000497099		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SEMA3F	chr3	50197167	+	RNF123	chr3	49742083	+
Frame-shit	ENST00000262325	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000262325	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000592545	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000592545	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000538556	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000538556	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000312678	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000312678	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000589344	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000589344	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000537622	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
Frame-shit	ENST00000537622	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
3UTR-3CDS	ENST00000545922	ENST00000254466		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
3UTR-3CDS	ENST00000545922	ENST00000587565		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	AP2B1	chr17	33984810	+	GAS2L2	chr17	34077337	-
intron-3CDS	ENST00000257765	ENST00000355773		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
intron-3UTR	ENST00000257765	ENST00000393019		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
intron-intron	ENST00000257765	ENST00000481996		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
Frame-shit	ENST00000370384	ENST00000355773		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
5CDS-3UTR	ENST00000370384	ENST00000393019		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
5CDS-intron	ENST00000370384	ENST00000481996		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
5UTR-3CDS	ENST00000484801	ENST00000355773		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
5UTR-3UTR	ENST00000484801	ENST00000393019		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
5UTR-intron	ENST00000484801	ENST00000481996		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KHDC1	chr6	74001721	-	SLC17A5	chr6	74325170	-
In-frame	ENST00000261681	ENST00000315266		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
In-frame	ENST00000261681	ENST00000478722		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-intron	ENST00000261681	ENST00000459628		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-intron	ENST00000261681	ENST00000543237		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-intron	ENST00000261681	ENST00000305960		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
In-frame	ENST00000555925	ENST00000315266		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
In-frame	ENST00000555925	ENST00000478722		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-intron	ENST00000555925	ENST00000459628		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-intron	ENST00000555925	ENST00000543237		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-intron	ENST00000555925	ENST00000305960		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
5CDS-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-intron	ENST00000554911	ENST00000459628		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-intron	ENST00000554911	ENST00000543237		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-intron	ENST00000554911	ENST00000305960		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-intron	ENST00000556345	ENST00000459628		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-intron	ENST00000556345	ENST00000543237		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-intron	ENST00000556345	ENST00000305960		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
intron-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	MPP5	chr14	67784196	+	GPHN	chr14	67555700	+
Frame-shit	ENST00000377748	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000377748	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000377748	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000377732	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000377732	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000377732	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000400915	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000400915	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000400915	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
Frame-shit	ENST00000377740	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000377740	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000377740	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5UTR-3CDS	ENST00000377737	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5UTR-3UTR	ENST00000377737	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
5UTR-3UTR	ENST00000377737	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000537245	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000537245	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000537245	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000544978	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000544978	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000544978	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000400913	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000400913	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000400913	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000340850	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000340850	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000340850	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000377725	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000377725	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000377725	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000377728	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000377728	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000377728	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000535355	ENST00000327300		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000535355	ENST00000307714		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000535355	ENST00000492989		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PLEKHG5	chr1	6579505	-	KHDRBS1	chr1	32495899	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5CDS-5UTR	ENST00000252577	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000252577	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000360315	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000360315	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5UTR-5UTR	ENST00000537887	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5UTR-intron	ENST00000537887	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000404158	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000404158	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000358713	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000358713	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5UTR-5UTR	ENST00000429563	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
5UTR-intron	ENST00000429563	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
intron-5UTR	ENST00000473184	ENST00000308064		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
intron-intron	ENST00000473184	ENST00000533673		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	GATAD2A	chr19	19576423	+	CHST1	chr11	45674156	-
In-frame	ENST00000319023	ENST00000262013		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000319023	ENST00000505279		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000319023	ENST00000357122		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
5CDS-intron	ENST00000319023	ENST00000509724		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
5CDS-intron	ENST00000319023	ENST00000510283		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000539574	ENST00000262013		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000539574	ENST00000505279		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000539574	ENST00000357122		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
5CDS-intron	ENST00000539574	ENST00000509724		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
5CDS-intron	ENST00000539574	ENST00000510283		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000530055	ENST00000262013		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000530055	ENST00000505279		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
In-frame	ENST00000530055	ENST00000357122		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
5CDS-intron	ENST00000530055	ENST00000509724		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
5CDS-intron	ENST00000530055	ENST00000510283		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
3UTR-3CDS	ENST00000526039	ENST00000262013		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
3UTR-3CDS	ENST00000526039	ENST00000505279		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
3UTR-3CDS	ENST00000526039	ENST00000357122		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
3UTR-intron	ENST00000526039	ENST00000509724		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
3UTR-intron	ENST00000526039	ENST00000510283		TCGA	RV	ESCA	TCGA-L5-A43I-01A	NADSYN1	chr11	71193071	+	SPAG9	chr17	49048217	-
Frame-shit	ENST00000506447	ENST00000374820		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
Frame-shit	ENST00000506447	ENST00000452740		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000506447	ENST00000480175		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
5UTR-3CDS	ENST00000325971	ENST00000374820		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
5UTR-3CDS	ENST00000325971	ENST00000452740		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
5UTR-5UTR	ENST00000325971	ENST00000480175		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
intron-3CDS	ENST00000430049	ENST00000374820		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
intron-3CDS	ENST00000430049	ENST00000452740		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
intron-5UTR	ENST00000430049	ENST00000480175		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
intron-3CDS	ENST00000540847	ENST00000374820		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
intron-3CDS	ENST00000540847	ENST00000452740		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
intron-5UTR	ENST00000540847	ENST00000480175		TCGA	RV	ESCA	TCGA-R6-A8WG-01A	CEP192	chr18	13001581	+	PIGU	chr20	33176411	-
5CDS-3UTR	ENST00000265299	ENST00000323037		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	FAM188B	chr7	30821828	+	ZNRF2	chr7	30405651	+
5CDS-intron	ENST00000265299	ENST00000459998		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	FAM188B	chr7	30821828	+	ZNRF2	chr7	30405651	+
In-frame	ENST00000314891	ENST00000299084		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LPCAT4	chr15	34654397	-	SPRED1	chr15	38591574	+
5CDS-3UTR	ENST00000314891	ENST00000561205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LPCAT4	chr15	34654397	-	SPRED1	chr15	38591574	+
intron-3CDS	ENST00000562431	ENST00000299084		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LPCAT4	chr15	34654397	-	SPRED1	chr15	38591574	+
intron-3UTR	ENST00000562431	ENST00000561205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LPCAT4	chr15	34654397	-	SPRED1	chr15	38591574	+
In-frame	ENST00000359428	ENST00000318560		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP214	chr9	134027281	+	ABL1	chr9	133747516	+
In-frame	ENST00000411637	ENST00000318560		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP214	chr9	134027281	+	ABL1	chr9	133747516	+
In-frame	ENST00000451030	ENST00000318560		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP214	chr9	134027281	+	ABL1	chr9	133747516	+
intron-3CDS	ENST00000483497	ENST00000318560		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP214	chr9	134027281	+	ABL1	chr9	133747516	+
intron-3CDS	ENST00000465486	ENST00000318560		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP214	chr9	134027281	+	ABL1	chr9	133747516	+
5CDS-intron	ENST00000541509	ENST00000396392		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000541509	ENST00000396396		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000541509	ENST00000604870		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000265382	ENST00000396392		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000265382	ENST00000396396		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000265382	ENST00000604870		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
intron-intron	ENST00000474356	ENST00000396392		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
intron-intron	ENST00000474356	ENST00000396396		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
intron-intron	ENST00000474356	ENST00000604870		TCGA	RV	ESCA	TCGA-L5-A891-01A	PIP5K1B	chr9	71491710	+	PGM5	chr9	71094334	+
5UTR-5UTR	ENST00000265343	ENST00000466212		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000265343	ENST00000335496		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-intron	ENST00000265343	ENST00000540400		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000265343	ENST00000375577		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000378595	ENST00000466212		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000378595	ENST00000335496		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-intron	ENST00000378595	ENST00000540400		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000378595	ENST00000375577		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000491831	ENST00000466212		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000491831	ENST00000335496		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-intron	ENST00000491831	ENST00000540400		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5UTR-5UTR	ENST00000491831	ENST00000375577		TCGA	RV	ESCA	TCGA-LN-A49M-01A	AFF4	chr5	132298951	-	SPATA21	chr1	16757917	-
5CDS-intron	ENST00000397412	ENST00000361339		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-intron	ENST00000397412	ENST00000426508		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-5UTR	ENST00000397412	ENST00000439987		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-intron	ENST00000436138	ENST00000361339		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-intron	ENST00000436138	ENST00000426508		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-5UTR	ENST00000436138	ENST00000439987		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-intron	ENST00000293925	ENST00000361339		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-intron	ENST00000293925	ENST00000426508		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-5UTR	ENST00000293925	ENST00000439987		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
intron-intron	ENST00000262317	ENST00000361339		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
intron-intron	ENST00000262317	ENST00000426508		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
intron-5UTR	ENST00000262317	ENST00000439987		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CRAMP1L	chr16	1664986	+	IFT140	chr16	1621535	-
5CDS-3UTR	ENST00000378204	ENST00000524325		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	EXT1	chr8	119122324	-	TSNARE1	chr8	143293674	-
5CDS-3UTR	ENST00000378204	ENST00000307180		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	EXT1	chr8	119122324	-	TSNARE1	chr8	143293674	-
5CDS-3UTR	ENST00000378204	ENST00000520166		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	EXT1	chr8	119122324	-	TSNARE1	chr8	143293674	-
5CDS-intron	ENST00000378204	ENST00000519651		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	EXT1	chr8	119122324	-	TSNARE1	chr8	143293674	-
5CDS-intron	ENST00000378204	ENST00000518928		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	EXT1	chr8	119122324	-	TSNARE1	chr8	143293674	-
5CDS-5UTR	ENST00000331244	ENST00000361781		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000331244	ENST00000429490		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000331244	ENST00000492601		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000331244	ENST00000361543		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-5UTR	ENST00000368644	ENST00000361781		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000368644	ENST00000429490		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000368644	ENST00000492601		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000368644	ENST00000361543		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
intron-5UTR	ENST00000496195	ENST00000361781		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
intron-intron	ENST00000496195	ENST00000429490		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
intron-intron	ENST00000496195	ENST00000492601		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
intron-intron	ENST00000496195	ENST00000361543		TCGA	RV	ESCA	TCGA-L5-A43E-01A	GLRX3	chr10	131934776	+	SGMS1	chr10	52279681	-
In-frame	ENST00000361804	ENST00000332674		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
In-frame	ENST00000361804	ENST00000361248		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
In-frame	ENST00000361804	ENST00000239007		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
In-frame	ENST00000361804	ENST00000393134		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
5CDS-3UTR	ENST00000361804	ENST00000485566		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
5CDS-3UTR	ENST00000361804	ENST00000369612		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
intron-3CDS	ENST00000462899	ENST00000332674		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
intron-3CDS	ENST00000462899	ENST00000361248		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
intron-3CDS	ENST00000462899	ENST00000239007		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
intron-3CDS	ENST00000462899	ENST00000393134		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
intron-3UTR	ENST00000462899	ENST00000485566		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
intron-3UTR	ENST00000462899	ENST00000369612		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMC3	chr10	112350330	+	MXI1	chr10	112038938	+
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
In-frame	ENST00000336229	ENST00000331738		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
In-frame	ENST00000336229	ENST00000354654		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	ESCA	TCGA-L5-A891-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122995735	-
Frame-shit	ENST00000285093	ENST00000285039		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
Frame-shit	ENST00000285093	ENST00000324581		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
5CDS-intron	ENST00000285093	ENST00000592688		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
5CDS-intron	ENST00000285093	ENST00000587895		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-3CDS	ENST00000589432	ENST00000285039		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-3CDS	ENST00000589432	ENST00000324581		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-intron	ENST00000589432	ENST00000592688		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-intron	ENST00000589432	ENST00000587895		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-3CDS	ENST00000587994	ENST00000285039		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-3CDS	ENST00000587994	ENST00000324581		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-intron	ENST00000587994	ENST00000592688		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
intron-intron	ENST00000587994	ENST00000587895		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACAA2	chr18	47339839	-	MYO5B	chr18	47380017	-
5CDS-intron	ENST00000543086	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000543086	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000546231	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000397203	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000360905	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000589028	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-intron	ENST00000355446	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000535572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000537687		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000315939		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000447667		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000530271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000540360		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000340908		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
3UTR-intron	ENST00000536573	ENST00000574564		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ERC1	chr12	1213990	+	WNK1	chr12	977032	+
5CDS-5UTR	ENST00000370357	ENST00000539115		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5CDS-5UTR	ENST00000370357	ENST00000379188		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5CDS-5UTR	ENST00000370357	ENST00000379177		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5CDS-5UTR	ENST00000370357	ENST00000304543		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5CDS-3UTR	ENST00000370357	ENST00000459724		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5CDS-3UTR	ENST00000370357	ENST00000540034		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5CDS-intron	ENST00000370357	ENST00000338565		TCGA	RV	ESCA	TCGA-VR-AA7B-01A	PASD1	chrX	150817174	+	ZFX	chrX	24225443	+
5UTR-intron	ENST00000461988	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-5UTR	ENST00000461988	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-3UTR	ENST00000461988	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-intron	ENST00000461988	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-intron	ENST00000419840	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-5UTR	ENST00000419840	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-3UTR	ENST00000419840	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-intron	ENST00000419840	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-intron	ENST00000394893	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-5UTR	ENST00000394893	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-3UTR	ENST00000394893	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
5UTR-intron	ENST00000394893	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000475509	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-5UTR	ENST00000475509	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-3UTR	ENST00000475509	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000475509	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000545601	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-5UTR	ENST00000545601	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-3UTR	ENST00000545601	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000545601	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000450476	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-5UTR	ENST00000450476	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-3UTR	ENST00000450476	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000450476	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000439269	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-5UTR	ENST00000439269	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-3UTR	ENST00000439269	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000439269	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49U-01A	POR	chr7	75544497	+	RHBDD2	chr7	75510683	+
Frame-shit	ENST00000285850	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000285850	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
5CDS-intron	ENST00000285850	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000555702	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
5CDS-intron	ENST00000555702	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397532	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
5CDS-intron	ENST00000397532	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397529	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
5CDS-intron	ENST00000397529	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
Frame-shit	ENST00000397528	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
5CDS-intron	ENST00000397528	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554061	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-intron	ENST00000554061	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000557515		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000338631		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000357481		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000605057		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000457657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000262710		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000397341		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-3CDS	ENST00000554517	ENST00000555053		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
intron-intron	ENST00000554517	ENST00000555352		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SLC7A7	chr14	23282109	-	ACIN1	chr14	23533697	-
In-frame	ENST00000361368	ENST00000292478		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
In-frame	ENST00000361368	ENST00000555673		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
5CDS-5UTR	ENST00000361368	ENST00000485746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
In-frame	ENST00000361125	ENST00000292478		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
In-frame	ENST00000361125	ENST00000555673		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
5CDS-5UTR	ENST00000361125	ENST00000485746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
intron-3CDS	ENST00000480055	ENST00000292478		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
intron-3CDS	ENST00000480055	ENST00000555673		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
intron-5UTR	ENST00000480055	ENST00000485746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	SMURF1	chr7	98741349	-	PTCD1	chr7	99027429	-
Frame-shit	ENST00000262376	ENST00000262370		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000262376	ENST00000415496		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000262376	ENST00000399577		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000262376	ENST00000588994		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000262376	ENST00000586183		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
5CDS-3UTR	ENST00000262376	ENST00000588015		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000545171	ENST00000262370		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000545171	ENST00000415496		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000545171	ENST00000399577		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000545171	ENST00000588994		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000545171	ENST00000586183		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
5CDS-3UTR	ENST00000545171	ENST00000588015		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000590769	ENST00000262370		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000590769	ENST00000415496		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000590769	ENST00000399577		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000590769	ENST00000588994		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000590769	ENST00000586183		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
5CDS-3UTR	ENST00000590769	ENST00000588015		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000396658	ENST00000262370		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000396658	ENST00000415496		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000396658	ENST00000399577		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000396658	ENST00000588994		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
Frame-shit	ENST00000396658	ENST00000586183		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
5CDS-3UTR	ENST00000396658	ENST00000588015		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
intron-3CDS	ENST00000585857	ENST00000262370		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
intron-3CDS	ENST00000585857	ENST00000415496		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
intron-3CDS	ENST00000585857	ENST00000399577		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
intron-3CDS	ENST00000585857	ENST00000588994		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
intron-3CDS	ENST00000585857	ENST00000586183		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
intron-3UTR	ENST00000585857	ENST00000588015		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	UBN1	chr16	4918904	+	MGRN1	chr16	4723499	+
In-frame	ENST00000359154	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000359154	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000359154	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000359154	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000359154	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000448661	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000448661	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000448661	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000448661	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000448661	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000569174	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000569174	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000569174	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000569174	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000569174	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000356003	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000356003	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000356003	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000356003	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
In-frame	ENST00000356003	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
3UTR-3CDS	ENST00000544162	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
3UTR-3CDS	ENST00000544162	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
3UTR-3CDS	ENST00000544162	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
3UTR-3CDS	ENST00000544162	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
3UTR-3CDS	ENST00000544162	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000542271	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000542271	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000542271	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000542271	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000542271	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000568684	ENST00000380898		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000568684	ENST00000447459		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000568684	ENST00000395724		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000568684	ENST00000380897		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
intron-3CDS	ENST00000568684	ENST00000569166		TCGA	RV	ESCA	TCGA-LN-A8HZ-01A	WWP2	chr16	69833198	+	GSG1L	chr16	27856382	-
5UTR-3CDS	ENST00000338483	ENST00000262241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
5UTR-3CDS	ENST00000338483	ENST00000570597		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
5UTR-3CDS	ENST00000538999	ENST00000262241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
5UTR-3CDS	ENST00000538999	ENST00000570597		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
5UTR-3CDS	ENST00000538320	ENST00000262241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
5UTR-3CDS	ENST00000538320	ENST00000570597		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
intron-3CDS	ENST00000426621	ENST00000262241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
intron-3CDS	ENST00000426621	ENST00000570597		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
intron-3CDS	ENST00000407965	ENST00000262241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
intron-3CDS	ENST00000407965	ENST00000570597		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	MAFF	chr22	38598219	+	RCOR1	chr14	103148232	+
intron-3CDS	ENST00000541742	ENST00000487338		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-5UTR	ENST00000541742	ENST00000498046		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-intron	ENST00000541742	ENST00000339986		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5UTR-3CDS	ENST00000490107	ENST00000487338		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5UTR-5UTR	ENST00000490107	ENST00000498046		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5UTR-intron	ENST00000490107	ENST00000339986		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
In-frame	ENST00000388985	ENST00000487338		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-5UTR	ENST00000388985	ENST00000498046		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-intron	ENST00000388985	ENST00000339986		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-3CDS	ENST00000366517	ENST00000487338		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-5UTR	ENST00000366517	ENST00000498046		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-intron	ENST00000366517	ENST00000339986		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
In-frame	ENST00000403792	ENST00000487338		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-5UTR	ENST00000403792	ENST00000498046		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-intron	ENST00000403792	ENST00000339986		TCGA	RV	ESCA	TCGA-LN-A4A1-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
Frame-shit	ENST00000262013	ENST00000393066		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000262013	ENST00000262294		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000262013	ENST00000376149		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000262013	ENST00000393065		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000262013	ENST00000584889		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000505279	ENST00000393066		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000505279	ENST00000262294		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000505279	ENST00000376149		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000505279	ENST00000393065		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000505279	ENST00000584889		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000357122	ENST00000393066		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000357122	ENST00000262294		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000357122	ENST00000376149		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000357122	ENST00000393065		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000357122	ENST00000584889		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
intron-3CDS	ENST00000509724	ENST00000393066		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
intron-3CDS	ENST00000509724	ENST00000262294		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
intron-5UTR	ENST00000509724	ENST00000376149		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
intron-5UTR	ENST00000509724	ENST00000393065		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
intron-5UTR	ENST00000509724	ENST00000584889		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000510283	ENST00000393066		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
Frame-shit	ENST00000510283	ENST00000262294		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000510283	ENST00000376149		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000510283	ENST00000393065		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
5CDS-5UTR	ENST00000510283	ENST00000584889		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	SPAG9	chr17	49057107	-	TRIM37	chr17	57168701	-
In-frame	ENST00000272895	ENST00000321276		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	ABCA12	chr2	215890397	-	SGPP2	chr2	223339287	+
In-frame	ENST00000389661	ENST00000321276		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	ABCA12	chr2	215890397	-	SGPP2	chr2	223339287	+
intron-3CDS	ENST00000412081	ENST00000321276		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	ABCA12	chr2	215890397	-	SGPP2	chr2	223339287	+
5UTR-3CDS	ENST00000396029	ENST00000371564		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396029	ENST00000396009		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396029	ENST00000609943		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396029	ENST00000610033		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396029	ENST00000414705		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396029	ENST00000609507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-3CDS	ENST00000396032	ENST00000371564		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396032	ENST00000396009		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396032	ENST00000609943		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396032	ENST00000610033		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396032	ENST00000414705		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
5UTR-intron	ENST00000396032	ENST00000609507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-3CDS	ENST00000371602	ENST00000371564		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000371602	ENST00000396009		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000371602	ENST00000609943		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000371602	ENST00000610033		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000371602	ENST00000414705		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000371602	ENST00000609507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-3CDS	ENST00000349014	ENST00000371564		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000349014	ENST00000396009		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000349014	ENST00000609943		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000349014	ENST00000610033		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000349014	ENST00000414705		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
intron-intron	ENST00000349014	ENST00000609507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ADNP	chr20	49547363	-	NFATC2	chr20	50015267	-
Frame-shit	ENST00000381669	ENST00000361906		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	BAIAP2L2	chr22	38493039	-	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000381669	ENST00000361684		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	BAIAP2L2	chr22	38493039	-	TMEM184B	chr22	38627340	-
5CDS-intron	ENST00000381669	ENST00000504337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	BAIAP2L2	chr22	38493039	-	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000332536	ENST00000361906		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	BAIAP2L2	chr22	38493039	-	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000332536	ENST00000361684		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	BAIAP2L2	chr22	38493039	-	TMEM184B	chr22	38627340	-
5CDS-intron	ENST00000332536	ENST00000504337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	BAIAP2L2	chr22	38493039	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000586702	ENST00000397661		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000592199		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000587760		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000585575		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000360105		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000588228		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000587260		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586702	ENST00000358552		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000586702	ENST00000588680		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000397661		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000592199		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000587760		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000585575		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000360105		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000588228		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000587260		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
Frame-shit	ENST00000294618	ENST00000358552		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
5CDS-3UTR	ENST00000294618	ENST00000588680		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000397661		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000592199		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000587760		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000585575		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000360105		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000588228		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000587260		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000319867	ENST00000358552		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000319867	ENST00000588680		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DOCK6	chr19	11373073	-	NFIX	chr19	13183861	+
5CDS-5UTR	ENST00000598205	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000598205	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000598205	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000376970	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000376970	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000376970	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000425460	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000425460	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000425460	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000440075	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000440075	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000440075	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000601313	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000601313	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000601313	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000262269	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000262269	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000262269	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000596571	ENST00000332427		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000596571	ENST00000537507		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000596571	ENST00000540510		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	MYH14	chr19	50714027	+	GPR19	chr12	12848445	-
Frame-shit	ENST00000495893	ENST00000475381		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000495893	ENST00000273512		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000495893	ENST00000538775		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000495893	ENST00000543711		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000494943	ENST00000475381		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000494943	ENST00000273512		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000494943	ENST00000538775		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000494943	ENST00000543711		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000467570	ENST00000475381		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000467570	ENST00000273512		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000467570	ENST00000538775		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000467570	ENST00000543711		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000474275	ENST00000475381		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000474275	ENST00000273512		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000474275	ENST00000538775		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-intron	ENST00000474275	ENST00000543711		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000497658	ENST00000475381		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000497658	ENST00000273512		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000497658	ENST00000538775		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-intron	ENST00000497658	ENST00000543711		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000481639	ENST00000475381		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000481639	ENST00000273512		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-3CDS	ENST00000481639	ENST00000538775		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
intron-intron	ENST00000481639	ENST00000543711		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	NCEH1	chr3	172365904	-
5UTR-3CDS	ENST00000375406	ENST00000293217		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACTL8	chr1	18081999	+	ACOX1	chr17	73974774	-
5UTR-5UTR	ENST00000375406	ENST00000537812		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACTL8	chr1	18081999	+	ACOX1	chr17	73974774	-
5UTR-5UTR	ENST00000375406	ENST00000301608		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACTL8	chr1	18081999	+	ACOX1	chr17	73974774	-
5UTR-5UTR	ENST00000375406	ENST00000591857		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACTL8	chr1	18081999	+	ACOX1	chr17	73974774	-
In-frame	ENST00000225428	ENST00000398575		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CWC25	chr17	36981419	-	C17orf98	chr17	36993493	-
5UTR-3CDS	ENST00000536127	ENST00000398575		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CWC25	chr17	36981419	-	C17orf98	chr17	36993493	-
Frame-shit	ENST00000313143	ENST00000332958		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	DVL3	chr3	183873584	+	RFX6	chr6	117252494	+
5CDS-intron	ENST00000313143	ENST00000471966		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	DVL3	chr3	183873584	+	RFX6	chr6	117252494	+
Frame-shit	ENST00000431765	ENST00000332958		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	DVL3	chr3	183873584	+	RFX6	chr6	117252494	+
5CDS-intron	ENST00000431765	ENST00000471966		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	DVL3	chr3	183873584	+	RFX6	chr6	117252494	+
3UTR-3CDS	ENST00000462665	ENST00000332958		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	DVL3	chr3	183873584	+	RFX6	chr6	117252494	+
3UTR-intron	ENST00000462665	ENST00000471966		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	DVL3	chr3	183873584	+	RFX6	chr6	117252494	+
In-frame	ENST00000479054	ENST00000420323		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
5CDS-intron	ENST00000479054	ENST00000466628		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
In-frame	ENST00000345716	ENST00000420323		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
5CDS-intron	ENST00000345716	ENST00000466628		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
In-frame	ENST00000488380	ENST00000420323		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
5CDS-intron	ENST00000488380	ENST00000466628		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
In-frame	ENST00000420808	ENST00000420323		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
5CDS-intron	ENST00000420808	ENST00000466628		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
intron-3CDS	ENST00000464280	ENST00000420323		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
intron-intron	ENST00000464280	ENST00000466628		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NISCH	chr3	52492860	+	DNAH1	chr3	52413921	+
Frame-shit	ENST00000360843	ENST00000332142		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000360843	ENST00000328032		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
5CDS-intron	ENST00000360843	ENST00000477019		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000431350	ENST00000332142		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000431350	ENST00000328032		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
5CDS-intron	ENST00000431350	ENST00000477019		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000442919	ENST00000332142		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000442919	ENST00000328032		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
5CDS-intron	ENST00000442919	ENST00000477019		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000521943	ENST00000332142		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
Frame-shit	ENST00000521943	ENST00000328032		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
5CDS-intron	ENST00000521943	ENST00000477019		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
intron-3CDS	ENST00000434911	ENST00000332142		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
intron-3CDS	ENST00000434911	ENST00000328032		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
intron-intron	ENST00000434911	ENST00000477019		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
intron-3CDS	ENST00000486857	ENST00000332142		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
intron-3CDS	ENST00000486857	ENST00000328032		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
intron-intron	ENST00000486857	ENST00000477019		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TLK1	chr2	171974249	-	KCNH7	chr2	163393590	-
5UTR-5UTR	ENST00000430629	ENST00000374005		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000399173		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000545953		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000430629	ENST00000374004		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000468038		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000374005		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000399173		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000545953		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000536657	ENST00000374004		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000468038		TCGA	RV	ESCA	TCGA-L5-A891-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
Frame-shit	ENST00000608083	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377855	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000545482	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000361521	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377842	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377845	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-3CDS	ENST00000541130	ENST00000377748		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000377732		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000400915		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000377740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000377737		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000537245		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000544978		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000400913		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000340850		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000377725		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000377728		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000535355		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
In-frame	ENST00000245907	ENST00000307635		TCGA	RV	ESCA	TCGA-JY-A938-01A	C3	chr19	6690640	-	ZNF556	chr19	2873494	+
In-frame	ENST00000245907	ENST00000586426		TCGA	RV	ESCA	TCGA-JY-A938-01A	C3	chr19	6690640	-	ZNF556	chr19	2873494	+
intron-3CDS	ENST00000599668	ENST00000307635		TCGA	RV	ESCA	TCGA-JY-A938-01A	C3	chr19	6690640	-	ZNF556	chr19	2873494	+
intron-3CDS	ENST00000599668	ENST00000586426		TCGA	RV	ESCA	TCGA-JY-A938-01A	C3	chr19	6690640	-	ZNF556	chr19	2873494	+
Frame-shit	ENST00000262033	ENST00000553127		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000262033	ENST00000321898		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000262033	ENST00000552918		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-intron	ENST00000262033	ENST00000547865		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-3UTR	ENST00000262033	ENST00000552557		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
intron-3CDS	ENST00000537473	ENST00000553127		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
intron-3CDS	ENST00000537473	ENST00000321898		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
intron-3CDS	ENST00000537473	ENST00000552918		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
intron-intron	ENST00000537473	ENST00000547865		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
intron-3UTR	ENST00000537473	ENST00000552557		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000414274	ENST00000553127		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000414274	ENST00000321898		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000414274	ENST00000552918		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-intron	ENST00000414274	ENST00000547865		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-3UTR	ENST00000414274	ENST00000552557		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000436399	ENST00000553127		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000436399	ENST00000321898		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000436399	ENST00000552918		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-intron	ENST00000436399	ENST00000547865		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-3UTR	ENST00000436399	ENST00000552557		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000448157	ENST00000553127		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000448157	ENST00000321898		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000448157	ENST00000552918		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-intron	ENST00000448157	ENST00000547865		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-3UTR	ENST00000448157	ENST00000552557		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000456859	ENST00000553127		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000456859	ENST00000321898		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
Frame-shit	ENST00000456859	ENST00000552918		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-intron	ENST00000456859	ENST00000547865		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5CDS-3UTR	ENST00000456859	ENST00000552557		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	PTGES3	chr12	57081782	-	SPATS2	chr12	49908338	+
5UTR-3CDS	ENST00000342907	ENST00000323786		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
5UTR-intron	ENST00000342907	ENST00000393612		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
5UTR-intron	ENST00000342907	ENST00000564653		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
intron-3CDS	ENST00000393640	ENST00000323786		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
intron-intron	ENST00000393640	ENST00000393612		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
intron-intron	ENST00000393640	ENST00000564653		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
5UTR-3CDS	ENST00000566097	ENST00000323786		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
5UTR-intron	ENST00000566097	ENST00000393612		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
5UTR-intron	ENST00000566097	ENST00000564653		TCGA	RV	ESCA	TCGA-L5-A4OJ-01A	ST3GAL2	chr16	70472852	-	COG4	chr16	70517872	-
In-frame	ENST00000336665	ENST00000294889		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	AGAP1	chr2	236877267	+	C1orf115	chr1	220869954	+
In-frame	ENST00000304032	ENST00000294889		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	AGAP1	chr2	236877267	+	C1orf115	chr1	220869954	+
In-frame	ENST00000409538	ENST00000294889		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	AGAP1	chr2	236877267	+	C1orf115	chr1	220869954	+
In-frame	ENST00000428334	ENST00000294889		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	AGAP1	chr2	236877267	+	C1orf115	chr1	220869954	+
intron-3CDS	ENST00000409457	ENST00000294889		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	AGAP1	chr2	236877267	+	C1orf115	chr1	220869954	+
5UTR-3CDS	ENST00000561924	ENST00000359087		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5UTR-3CDS	ENST00000561924	ENST00000290810		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5UTR-3CDS	ENST00000561924	ENST00000379463		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5UTR-5UTR	ENST00000561924	ENST00000394074		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5UTR-5UTR	ENST00000561924	ENST00000564040		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
In-frame	ENST00000290858	ENST00000359087		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
In-frame	ENST00000290858	ENST00000290810		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
In-frame	ENST00000290858	ENST00000379463		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5CDS-5UTR	ENST00000290858	ENST00000394074		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5CDS-5UTR	ENST00000290858	ENST00000564040		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
In-frame	ENST00000412916	ENST00000359087		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
In-frame	ENST00000412916	ENST00000290810		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
In-frame	ENST00000412916	ENST00000379463		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5CDS-5UTR	ENST00000412916	ENST00000394074		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
5CDS-5UTR	ENST00000412916	ENST00000564040		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
intron-3CDS	ENST00000568858	ENST00000359087		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
intron-3CDS	ENST00000568858	ENST00000290810		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
intron-3CDS	ENST00000568858	ENST00000379463		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
intron-5UTR	ENST00000568858	ENST00000394074		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
intron-5UTR	ENST00000568858	ENST00000564040		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CBFB	chr16	67070658	+	NAE1	chr16	66857503	-
intron-3CDS	ENST00000593786	ENST00000451813		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-3CDS	ENST00000593786	ENST00000252015		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-intron	ENST00000593786	ENST00000539834		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-intron	ENST00000593786	ENST00000432634		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-3CDS	ENST00000374796	ENST00000451813		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-3CDS	ENST00000374796	ENST00000252015		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-intron	ENST00000374796	ENST00000539834		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
intron-intron	ENST00000374796	ENST00000432634		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
5UTR-3CDS	ENST00000359003	ENST00000451813		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
5UTR-3CDS	ENST00000359003	ENST00000252015		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
5UTR-intron	ENST00000359003	ENST00000539834		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
5UTR-intron	ENST00000359003	ENST00000432634		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NCOA6	chr20	33413275	-	TRPC4AP	chr20	33637797	-
Frame-shit	ENST00000262879	ENST00000361383		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000262879	ENST00000405275		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000262879	ENST00000373473		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000262879	ENST00000473857		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000262879	ENST00000373469		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397042	ENST00000361383		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397042	ENST00000405275		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397042	ENST00000373473		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000397042	ENST00000473857		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000397042	ENST00000373469		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397038	ENST00000361383		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397038	ENST00000405275		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397038	ENST00000373473		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000397038	ENST00000473857		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000397038	ENST00000373469		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000537204	ENST00000361383		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000537204	ENST00000405275		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000537204	ENST00000373473		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3UTR	ENST00000537204	ENST00000473857		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3UTR	ENST00000537204	ENST00000373469		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397040	ENST00000361383		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397040	ENST00000405275		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000397040	ENST00000373473		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000397040	ENST00000473857		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
5CDS-3UTR	ENST00000397040	ENST00000373469		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000490114	ENST00000361383		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000490114	ENST00000405275		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3CDS	ENST00000490114	ENST00000373473		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3UTR	ENST00000490114	ENST00000473857		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
intron-3UTR	ENST00000490114	ENST00000373469		TCGA	RV	ESCA	TCGA-R6-A6Y0-01B	RALGAPB	chr20	37169835	+	CTNNBL1	chr20	36488301	+
Frame-shit	ENST00000550746	ENST00000283228		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000550746	ENST00000440835		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000550746	ENST00000537619		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000550746	ENST00000378778		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000550746	ENST00000342084		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000550746	ENST00000549308		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000319106	ENST00000283228		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000319106	ENST00000440835		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000319106	ENST00000537619		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000319106	ENST00000378778		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000319106	ENST00000342084		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000319106	ENST00000549308		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000485960	ENST00000283228		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000485960	ENST00000440835		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000485960	ENST00000537619		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000485960	ENST00000378778		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000485960	ENST00000342084		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000485960	ENST00000549308		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5UTR-3CDS	ENST00000393309	ENST00000283228		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000393309	ENST00000440835		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000393309	ENST00000537619		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000393309	ENST00000378778		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000393309	ENST00000342084		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000393309	ENST00000549308		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-3CDS	ENST00000548679	ENST00000283228		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000548679	ENST00000440835		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000548679	ENST00000537619		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000548679	ENST00000378778		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000548679	ENST00000342084		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000548679	ENST00000549308		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	TBC1D15	chr12	72266783	+	PTPRR	chr12	71286757	-
intron-3CDS	ENST00000430069	ENST00000328913		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
intron-3CDS	ENST00000430069	ENST00000473233		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
intron-3CDS	ENST00000430069	ENST00000447025		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
intron-3CDS	ENST00000430069	ENST00000414362		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
intron-intron	ENST00000430069	ENST00000468976		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
5UTR-3CDS	ENST00000457928	ENST00000328913		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
5UTR-3CDS	ENST00000457928	ENST00000473233		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
5UTR-3CDS	ENST00000457928	ENST00000447025		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
5UTR-3CDS	ENST00000457928	ENST00000414362		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
5UTR-intron	ENST00000457928	ENST00000468976		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	MCF2L2	chr3	183107567	-
5CDS-5UTR	ENST00000283921	ENST00000444405		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
5CDS-5UTR	ENST00000283921	ENST00000246891		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
5CDS-5UTR	ENST00000283921	ENST00000507763		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
5CDS-intron	ENST00000283921	ENST00000507772		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
5CDS-intron	ENST00000283921	ENST00000505782		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-5UTR	ENST00000396344	ENST00000444405		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-5UTR	ENST00000396344	ENST00000246891		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-5UTR	ENST00000396344	ENST00000507763		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-intron	ENST00000396344	ENST00000507772		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-intron	ENST00000396344	ENST00000505782		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-5UTR	ENST00000521421	ENST00000444405		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-5UTR	ENST00000521421	ENST00000246891		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-5UTR	ENST00000521421	ENST00000507763		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-intron	ENST00000521421	ENST00000507772		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
intron-intron	ENST00000521421	ENST00000505782		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	HOXA10	chr7	27212968	-	CSN1S1	chr4	70798262	+
Frame-shit	ENST00000248668	ENST00000356433		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LRFN1	chr19	39804571	-	DLL3	chr19	39993455	+
5CDS-intron	ENST00000248668	ENST00000600579		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LRFN1	chr19	39804571	-	DLL3	chr19	39993455	+
5CDS-intron	ENST00000248668	ENST00000205143		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	LRFN1	chr19	39804571	-	DLL3	chr19	39993455	+
Frame-shit	ENST00000358026	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000358026	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000358026	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000358026	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000344626	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000344626	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000344626	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000344626	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000429416	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000429416	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000429416	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000429416	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000541122	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000541122	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000541122	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000541122	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000589677	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000589677	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000589677	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000589677	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000444061	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000444061	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000444061	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000444061	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000590574	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000590574	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000590574	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000590574	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000413806	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000413806	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000413806	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000413806	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000450717	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000450717	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000450717	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000450717	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
intron-3CDS	ENST00000538456	ENST00000407327		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
intron-3CDS	ENST00000538456	ENST00000335757		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
intron-3CDS	ENST00000538456	ENST00000586078		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
intron-intron	ENST00000538456	ENST00000588214		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SMARCA4	chr19	11107220	+	SLC44A2	chr19	10745432	+
5UTR-3CDS	ENST00000397942	ENST00000299543		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	SOCS6	chr18	67956326	+	CTDP1	chr18	77455225	+
5UTR-3CDS	ENST00000397942	ENST00000075430		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	SOCS6	chr18	67956326	+	CTDP1	chr18	77455225	+
5UTR-intron	ENST00000397942	ENST00000587623		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	SOCS6	chr18	67956326	+	CTDP1	chr18	77455225	+
intron-3CDS	ENST00000582322	ENST00000299543		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	SOCS6	chr18	67956326	+	CTDP1	chr18	77455225	+
intron-3CDS	ENST00000582322	ENST00000075430		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	SOCS6	chr18	67956326	+	CTDP1	chr18	77455225	+
intron-intron	ENST00000582322	ENST00000587623		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	SOCS6	chr18	67956326	+	CTDP1	chr18	77455225	+
5CDS-5UTR	ENST00000331366	ENST00000010404		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000331366	ENST00000396210		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000331366	ENST00000535309		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000331366	ENST00000540056		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000331366	ENST00000396209		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000331366	ENST00000396207		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-intron	ENST00000331366	ENST00000359720		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000538596	ENST00000010404		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000538596	ENST00000396210		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000538596	ENST00000535309		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000538596	ENST00000540056		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000538596	ENST00000396209		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000538596	ENST00000396207		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-intron	ENST00000538596	ENST00000359720		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000546603	ENST00000010404		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000546603	ENST00000396210		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000546603	ENST00000535309		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000546603	ENST00000540056		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000546603	ENST00000396209		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-5UTR	ENST00000546603	ENST00000396207		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
intron-intron	ENST00000546603	ENST00000359720		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000360449	ENST00000010404		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000360449	ENST00000396210		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000360449	ENST00000535309		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000360449	ENST00000540056		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000360449	ENST00000396209		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-5UTR	ENST00000360449	ENST00000396207		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
5CDS-intron	ENST00000360449	ENST00000359720		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	CPNE8	chr12	39155914	-	MGST1	chr12	16507165	+
In-frame	ENST00000344338	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
In-frame	ENST00000368955	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
In-frame	ENST00000330163	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
In-frame	ENST00000338354	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
In-frame	ENST00000368956	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
In-frame	ENST00000368909	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
intron-3CDS	ENST00000359586	ENST00000528446		TCGA	RV	ESCA	TCGA-Q9-A6FW-01A	DMBT1	chr10	124380896	+	ARMS2	chr10	124216423	+
Frame-shit	ENST00000322349	ENST00000393217		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	EEA1	chr12	93322819	-	LRRIQ1	chr12	85497782	+
5CDS-intron	ENST00000322349	ENST00000528777		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	EEA1	chr12	93322819	-	LRRIQ1	chr12	85497782	+
5UTR-3CDS	ENST00000547833	ENST00000393217		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	EEA1	chr12	93322819	-	LRRIQ1	chr12	85497782	+
5UTR-intron	ENST00000547833	ENST00000528777		TCGA	RV	ESCA	TCGA-JY-A6FE-01A	EEA1	chr12	93322819	-	LRRIQ1	chr12	85497782	+
Frame-shit	ENST00000579585	ENST00000393547		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000579585	ENST00000398338		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000579585	ENST00000315005		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000579585	ENST00000526915		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
Frame-shit	ENST00000584573	ENST00000393547		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000584573	ENST00000398338		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000584573	ENST00000315005		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000584573	ENST00000526915		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
Frame-shit	ENST00000361733	ENST00000393547		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000361733	ENST00000398338		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000361733	ENST00000315005		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000361733	ENST00000526915		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
Frame-shit	ENST00000361357	ENST00000393547		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000361357	ENST00000398338		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000361357	ENST00000315005		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000361357	ENST00000526915		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
Frame-shit	ENST00000577395	ENST00000393547		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000577395	ENST00000398338		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000577395	ENST00000315005		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
5CDS-intron	ENST00000577395	ENST00000526915		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
intron-3CDS	ENST00000577784	ENST00000393547		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
intron-intron	ENST00000577784	ENST00000398338		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
intron-intron	ENST00000577784	ENST00000315005		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
intron-intron	ENST00000577784	ENST00000526915		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MAP3K3	chr17	61730016	+	DBF4B	chr17	42824451	+
In-frame	ENST00000368836	ENST00000337195		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
In-frame	ENST00000368836	ENST00000531469		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000368836	ENST00000494626		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
In-frame	ENST00000368836	ENST00000411419		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000368836	ENST00000476817		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000368836	ENST00000309035		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000368836	ENST00000334808		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	METTL10	chr10	126453961	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000433608	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TTLL6	chr17	46862285	-	NOS2	chr17	26116714	-
Frame-shit	ENST00000393382	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TTLL6	chr17	46862285	-	NOS2	chr17	26116714	-
intron-3CDS	ENST00000470462	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TTLL6	chr17	46862285	-	NOS2	chr17	26116714	-
Frame-shit	ENST00000245865	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000245865	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000245865	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000245865	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000245865	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000245865	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000245865	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000375840	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000375840	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000375840	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000375840	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000375840	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000375840	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000375840	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000392950	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000392950	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000392950	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000392950	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000392950	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000392950	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000392950	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000336174	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000336174	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000336174	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000336174	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000336174	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000336174	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000336174	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000447001	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000447001	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000447001	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000447001	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000447001	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000447001	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000447001	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000582137	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000582137	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000582137	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000582137	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000582137	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
In-frame	ENST00000582137	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000582137	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000580039	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000580039	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000580039	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000580039	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000580039	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000580039	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5UTR-intron	ENST00000580039	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000579340	ENST00000392562		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000579340	ENST00000316804		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000579340	ENST00000316615		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000579340	ENST00000392563		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000579340	ENST00000392564		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000579340	ENST00000578961		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000579340	ENST00000462266		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	STRADA	chr17	61790766	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000301764	ENST00000340437		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
Frame-shit	ENST00000301764	ENST00000394888		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
Frame-shit	ENST00000301764	ENST00000439958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
5CDS-intron	ENST00000301764	ENST00000494016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
5CDS-intron	ENST00000301764	ENST00000448745		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
5CDS-intron	ENST00000301764	ENST00000541963		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000450997	ENST00000340437		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000450997	ENST00000394888		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000450997	ENST00000439958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000450997	ENST00000494016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000450997	ENST00000448745		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000450997	ENST00000541963		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000451943	ENST00000340437		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000451943	ENST00000394888		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000451943	ENST00000439958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000451943	ENST00000494016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000451943	ENST00000448745		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000451943	ENST00000541963		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000538470	ENST00000340437		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000538470	ENST00000394888		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000538470	ENST00000439958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000538470	ENST00000494016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000538470	ENST00000448745		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000538470	ENST00000541963		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000545930	ENST00000340437		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000545930	ENST00000394888		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-3CDS	ENST00000545930	ENST00000439958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000545930	ENST00000494016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000545930	ENST00000448745		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
intron-intron	ENST00000545930	ENST00000541963		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DDB1	chr11	61080971	-	CPSF7	chr11	61183991	-
5UTR-3CDS	ENST00000561482	ENST00000321728		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-3CDS	ENST00000561482	ENST00000303531		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-intron	ENST00000561482	ENST00000482000		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-intron	ENST00000561482	ENST00000498058		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
Frame-shit	ENST00000160827	ENST00000321728		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
Frame-shit	ENST00000160827	ENST00000303531		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5CDS-intron	ENST00000160827	ENST00000482000		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5CDS-intron	ENST00000160827	ENST00000498058		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-3CDS	ENST00000400750	ENST00000321728		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-3CDS	ENST00000400750	ENST00000303531		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-intron	ENST00000400750	ENST00000482000		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
5UTR-intron	ENST00000400750	ENST00000498058		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-3CDS	ENST00000400751	ENST00000321728		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-3CDS	ENST00000400751	ENST00000303531		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-intron	ENST00000400751	ENST00000482000		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-intron	ENST00000400751	ENST00000498058		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-3CDS	ENST00000569382	ENST00000321728		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-3CDS	ENST00000569382	ENST00000303531		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-intron	ENST00000569382	ENST00000482000		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-intron	ENST00000569382	ENST00000498058		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-3CDS	ENST00000563263	ENST00000321728		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-3CDS	ENST00000563263	ENST00000303531		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-intron	ENST00000563263	ENST00000482000		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
intron-intron	ENST00000563263	ENST00000498058		TCGA	RV	ESCA	TCGA-R6-A6XG-01B	KIF22	chr16	29802150	+	PRKCB	chr16	24043457	+
Frame-shit	ENST00000559279	ENST00000395407		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000559279	ENST00000561153		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
In-frame	ENST00000559279	ENST00000340965		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
5CDS-intron	ENST00000559279	ENST00000561027		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000395392	ENST00000395407		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000395392	ENST00000561153		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
In-frame	ENST00000395392	ENST00000340965		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
5CDS-intron	ENST00000395392	ENST00000561027		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000352331	ENST00000395407		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000352331	ENST00000561153		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
In-frame	ENST00000352331	ENST00000340965		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
5CDS-intron	ENST00000352331	ENST00000561027		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000260363	ENST00000395407		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000260363	ENST00000561153		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
In-frame	ENST00000260363	ENST00000340965		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
5CDS-intron	ENST00000260363	ENST00000561027		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-3CDS	ENST00000558585	ENST00000395407		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-3CDS	ENST00000558585	ENST00000561153		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-3CDS	ENST00000558585	ENST00000340965		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-intron	ENST00000558585	ENST00000561027		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-3CDS	ENST00000537891	ENST00000395407		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-3CDS	ENST00000537891	ENST00000561153		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-3CDS	ENST00000537891	ENST00000340965		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
intron-intron	ENST00000537891	ENST00000561027		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	KIF23	chr15	69709850	+	PAQR5	chr15	69695920	+
Frame-shit	ENST00000531066	ENST00000318024		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000531066	ENST00000527020		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000531066	ENST00000005226		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000531066	ENST00000527720		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
5CDS-5UTR	ENST00000531066	ENST00000529563		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000355661	ENST00000318024		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000355661	ENST00000527020		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000355661	ENST00000005226		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000355661	ENST00000527720		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
5CDS-5UTR	ENST00000355661	ENST00000529563		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000448080	ENST00000318024		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000448080	ENST00000527020		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000448080	ENST00000005226		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000448080	ENST00000527720		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
5CDS-5UTR	ENST00000448080	ENST00000529563		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000532079	ENST00000318024		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000532079	ENST00000527020		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000532079	ENST00000005226		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000532079	ENST00000527720		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-5UTR	ENST00000532079	ENST00000529563		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000332954	ENST00000318024		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000332954	ENST00000527020		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000332954	ENST00000005226		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-3CDS	ENST00000332954	ENST00000527720		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
intron-5UTR	ENST00000332954	ENST00000529563		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	USH1C	chr11	17523527	-
Frame-shit	ENST00000313174	ENST00000377669		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
In-frame	ENST00000313174	ENST00000377666		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
5CDS-intron	ENST00000313174	ENST00000472022		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
Frame-shit	ENST00000305425	ENST00000377669		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
In-frame	ENST00000305425	ENST00000377666		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
5CDS-intron	ENST00000305425	ENST00000472022		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
Frame-shit	ENST00000354591	ENST00000377669		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
In-frame	ENST00000354591	ENST00000377666		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
5CDS-intron	ENST00000354591	ENST00000472022		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
Frame-shit	ENST00000359684	ENST00000377669		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
In-frame	ENST00000359684	ENST00000377666		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
5CDS-intron	ENST00000359684	ENST00000472022		TCGA	RV	ESCA	TCGA-XP-A8T8-01A	DACH1	chr13	72440054	-	KLF12	chr13	74269808	-
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
In-frame	ENST00000369774	ENST00000224950		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
In-frame	ENST00000369774	ENST00000369764		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
In-frame	ENST00000355946	ENST00000224950		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
In-frame	ENST00000355946	ENST00000369764		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105652010	-
5CDS-intron	ENST00000296043	ENST00000510197		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000339906		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000515604		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000424749		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000515589		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000510197		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000339906		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000515604		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000424749		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000515589		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	SHROOM3	chr4	77680848	+	FAM47E	chr4	77230297	+
In-frame	ENST00000590918	ENST00000588161		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000590918	ENST00000262633		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000590918	ENST00000592202		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000590918	ENST00000586618		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000590918	ENST00000589559		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000590918	ENST00000360475		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000590918	ENST00000589871		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000263281	ENST00000588161		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000263281	ENST00000262633		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000263281	ENST00000592202		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000263281	ENST00000586618		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000263281	ENST00000589559		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000263281	ENST00000360475		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000263281	ENST00000589871		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000304207	ENST00000588161		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000304207	ENST00000262633		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
In-frame	ENST00000304207	ENST00000592202		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000304207	ENST00000586618		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000304207	ENST00000589559		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000304207	ENST00000360475		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5CDS-intron	ENST00000304207	ENST00000589871		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-3CDS	ENST00000593127	ENST00000588161		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-3CDS	ENST00000593127	ENST00000262633		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-3CDS	ENST00000593127	ENST00000592202		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-intron	ENST00000593127	ENST00000586618		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-intron	ENST00000593127	ENST00000589559		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-intron	ENST00000593127	ENST00000360475		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
intron-intron	ENST00000593127	ENST00000589871		TCGA	RV	ESCA	TCGA-L5-A891-01A	GIPR	chr19	46173992	+	RBM42	chr19	36128060	+
5UTR-3CDS	ENST00000230859	ENST00000274192		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	PAPD7	chr5	6714812	+	SRD5A1	chr5	6662929	+
5UTR-3UTR	ENST00000230859	ENST00000537411		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	PAPD7	chr5	6714812	+	SRD5A1	chr5	6662929	+
5UTR-intron	ENST00000230859	ENST00000504286		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	PAPD7	chr5	6714812	+	SRD5A1	chr5	6662929	+
5UTR-intron	ENST00000230859	ENST00000538824		TCGA	RV	ESCA	TCGA-R6-A8W8-01B	PAPD7	chr5	6714812	+	SRD5A1	chr5	6662929	+
intron-3UTR	ENST00000494222	ENST00000464755		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
intron-3UTR	ENST00000494222	ENST00000371321		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000368990	ENST00000464755		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000368990	ENST00000371321		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000368988	ENST00000464755		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000368988	ENST00000371321		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000368989	ENST00000464755		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000368989	ENST00000371321		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000538022	ENST00000464755		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000538022	ENST00000371321		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000433307	ENST00000464755		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
5CDS-3UTR	ENST00000433307	ENST00000371321		TCGA	RV	ESCA	TCGA-L5-A88Y-01A	PLEKHA1	chr10	124159904	+	CYP2C19	chr10	96602594	+
Frame-shit	ENST00000262915	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000262915	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000262915	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000262915	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000262915	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000262915	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372375	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372375	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372375	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372375	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372375	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372375	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000351035	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000351035	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000351035	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000351035	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000351035	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000351035	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372374	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372374	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372374	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372374	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372374	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372374	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000353126	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000353126	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000353126	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000353126	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000353126	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000353126	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000545417	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000545417	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000545417	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000545417	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000545417	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000545417	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000330208	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000330208	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000330208	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000330208	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000330208	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000330208	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000335430	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000335430	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000335430	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000335430	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000335430	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000335430	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372377	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372377	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372377	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372377	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372377	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372377	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361392	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361392	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361392	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361392	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361392	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000361392	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361400	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361400	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361400	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361400	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361400	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000361400	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000347631	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000347631	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000347631	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000347631	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000347631	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000347631	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361812	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361812	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361812	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361812	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361812	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000361812	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372362	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372362	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372362	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372362	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372362	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372362	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531451	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531451	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531451	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531451	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531451	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000531451	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372366	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372366	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372366	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372366	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372366	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372366	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372365	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372365	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372365	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372365	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372365	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372365	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372368	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372368	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372368	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372368	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372368	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372368	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000332628	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000332628	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000332628	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000332628	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000332628	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000332628	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372372	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372372	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372372	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372372	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372372	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372372	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531816	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531816	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531816	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531816	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531816	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000531816	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000528371	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000528371	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000528371	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000528371	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000528371	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000528371	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372369	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372369	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372369	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372369	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372369	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372369	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531993	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531993	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531993	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531993	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000531993	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000531993	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361746	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361746	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361746	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361746	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000361746	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000361746	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000533933	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000533933	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000533933	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000533933	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000533933	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000533933	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372367	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372367	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372367	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372367	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
Frame-shit	ENST00000372367	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
5CDS-3UTR	ENST00000372367	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
3UTR-3CDS	ENST00000461375	ENST00000359947		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
3UTR-3CDS	ENST00000461375	ENST00000438120		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
3UTR-3CDS	ENST00000461375	ENST00000372413		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
3UTR-3CDS	ENST00000461375	ENST00000372414		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
3UTR-3CDS	ENST00000461375	ENST00000422171		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
3UTR-3UTR	ENST00000461375	ENST00000496447		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	ST3GAL3	chr1	44280605	+	PTPRF	chr1	44069087	+
In-frame	ENST00000557636	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000557636	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000557636	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000557636	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000557636	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-3CDS	ENST00000286650	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000286650	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000286650	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000286650	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000286650	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
In-frame	ENST00000298832	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000298832	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000298832	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000298832	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000298832	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
In-frame	ENST00000556893	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000556893	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000556893	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000556893	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000556893	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
In-frame	ENST00000554510	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000554510	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000554510	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000554510	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
5CDS-intron	ENST00000554510	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-3CDS	ENST00000556977	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000556977	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000556977	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000556977	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000556977	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-3CDS	ENST00000555422	ENST00000419727		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000555422	ENST00000559773		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000555422	ENST00000437176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000555422	ENST00000435893		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
intron-intron	ENST00000555422	ENST00000267569		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TTLL5	chr14	76259443	+	JDP2	chr14	75928129	+
Frame-shit	ENST00000302418	ENST00000375110		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
Frame-shit	ENST00000302418	ENST00000319778		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
Frame-shit	ENST00000302418	ENST00000263062		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
5CDS-intron	ENST00000302418	ENST00000480402		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
intron-3CDS	ENST00000493889	ENST00000375110		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
intron-3CDS	ENST00000493889	ENST00000319778		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
intron-3CDS	ENST00000493889	ENST00000263062		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
intron-intron	ENST00000493889	ENST00000480402		TCGA	RV	ESCA	TCGA-V5-AASW-01A	KIF5B	chr10	32317356	-	EPC1	chr10	32562209	-
5CDS-5UTR	ENST00000361368	ENST00000309955		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361368	ENST00000443227		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000341222		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000340870		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000355558		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000341582		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000342795		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000395148		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000423241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361368	ENST00000490965		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361368	ENST00000440180		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361368	ENST00000457277		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361368	ENST00000494258		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361368	ENST00000479953		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000309955		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361125	ENST00000443227		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000341222		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000340870		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000355558		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000341582		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000342795		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000395148		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000423241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361125	ENST00000490965		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000361125	ENST00000440180		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361125	ENST00000457277		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361125	ENST00000494258		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000361125	ENST00000479953		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000309955		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000480055	ENST00000443227		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000341222		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000340870		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000355558		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000341582		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000342795		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000395148		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000423241		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000480055	ENST00000490965		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000480055	ENST00000440180		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000480055	ENST00000457277		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000480055	ENST00000494258		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
intron-intron	ENST00000480055	ENST00000479953		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	SMURF1	chr7	98741349	-	CFLAR	chr2	201994452	+
In-frame	ENST00000292147	ENST00000339082		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
In-frame	ENST00000292147	ENST00000601723		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
In-frame	ENST00000292147	ENST00000340093		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
5CDS-intron	ENST00000292147	ENST00000221264		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
In-frame	ENST00000600651	ENST00000339082		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
In-frame	ENST00000600651	ENST00000601723		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
In-frame	ENST00000600651	ENST00000340093		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
5CDS-intron	ENST00000600651	ENST00000221264		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ETHE1	chr19	44030667	-	PLAUR	chr19	44159725	-
Frame-shit	ENST00000388995	ENST00000575403		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
Frame-shit	ENST00000388995	ENST00000477478		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000388995	ENST00000468679		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000388995	ENST00000461069		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000388995	ENST00000395615		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000388995	ENST00000261499		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000388995	ENST00000395616		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000388995	ENST00000268841		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
Frame-shit	ENST00000585154	ENST00000575403		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
Frame-shit	ENST00000585154	ENST00000477478		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000585154	ENST00000468679		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000585154	ENST00000461069		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000585154	ENST00000395615		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000585154	ENST00000261499		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000585154	ENST00000395616		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000585154	ENST00000268841		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
In-frame	ENST00000345041	ENST00000575403		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
In-frame	ENST00000345041	ENST00000477478		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000345041	ENST00000468679		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000345041	ENST00000461069		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000345041	ENST00000395615		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000345041	ENST00000261499		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000345041	ENST00000395616		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-intron	ENST00000345041	ENST00000268841		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FAM83G	chr17	18891560	-	B9D1	chr17	19261264	-
5CDS-3UTR	ENST00000268182	ENST00000331497		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	IQGAP1	chr15	90934105	+	NGRN	chr15	90814420	+
5CDS-3UTR	ENST00000268182	ENST00000379095		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	IQGAP1	chr15	90934105	+	NGRN	chr15	90814420	+
intron-3UTR	ENST00000560738	ENST00000331497		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	IQGAP1	chr15	90934105	+	NGRN	chr15	90814420	+
intron-3UTR	ENST00000560738	ENST00000379095		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	IQGAP1	chr15	90934105	+	NGRN	chr15	90814420	+
intron-3UTR	ENST00000560020	ENST00000331497		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	IQGAP1	chr15	90934105	+	NGRN	chr15	90814420	+
intron-3UTR	ENST00000560020	ENST00000379095		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	IQGAP1	chr15	90934105	+	NGRN	chr15	90814420	+
In-frame	ENST00000394126	ENST00000246672		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MED24	chr17	38178208	-	NR1D1	chr17	38253656	-
Frame-shit	ENST00000356271	ENST00000246672		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MED24	chr17	38178208	-	NR1D1	chr17	38253656	-
Frame-shit	ENST00000394128	ENST00000246672		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MED24	chr17	38178208	-	NR1D1	chr17	38253656	-
Frame-shit	ENST00000394127	ENST00000246672		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MED24	chr17	38178208	-	NR1D1	chr17	38253656	-
In-frame	ENST00000501516	ENST00000246672		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MED24	chr17	38178208	-	NR1D1	chr17	38253656	-
intron-3CDS	ENST00000479829	ENST00000246672		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MED24	chr17	38178208	-	NR1D1	chr17	38253656	-
Frame-shit	ENST00000372577	ENST00000372592		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
In-frame	ENST00000372577	ENST00000308941		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
Frame-shit	ENST00000372577	ENST00000353176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
Frame-shit	ENST00000372577	ENST00000421063		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
5CDS-3UTR	ENST00000372577	ENST00000487504		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
3UTR-3CDS	ENST00000550219	ENST00000372592		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
3UTR-3CDS	ENST00000550219	ENST00000308941		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
3UTR-3CDS	ENST00000550219	ENST00000353176		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
3UTR-3CDS	ENST00000550219	ENST00000421063		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
3UTR-3UTR	ENST00000550219	ENST00000487504		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131703724	+
intron-3CDS	ENST00000585331	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000585331	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000585331	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000585331	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000585331	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
Frame-shit	ENST00000317615	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000317615	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000317615	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000317615	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000317615	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
Frame-shit	ENST00000590217	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000590217	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000590217	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000590217	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
5CDS-intron	ENST00000590217	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-3CDS	ENST00000589405	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000589405	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000589405	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000589405	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
intron-intron	ENST00000589405	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	PSMG2	chr18	12703163	+	OSBPL1A	chr18	21914294	-
In-frame	ENST00000269485	ENST00000256858		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	TNFRSF11A	chr18	59992660	+	KIAA1468	chr18	59911997	+
In-frame	ENST00000269485	ENST00000398130		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	TNFRSF11A	chr18	59992660	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000269485	ENST00000592479		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	TNFRSF11A	chr18	59992660	+	KIAA1468	chr18	59911997	+
In-frame	ENST00000586569	ENST00000256858		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	TNFRSF11A	chr18	59992660	+	KIAA1468	chr18	59911997	+
In-frame	ENST00000586569	ENST00000398130		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	TNFRSF11A	chr18	59992660	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000586569	ENST00000592479		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	TNFRSF11A	chr18	59992660	+	KIAA1468	chr18	59911997	+
In-frame	ENST00000418814	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
5CDS-intron	ENST00000418814	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
intron-3CDS	ENST00000370479	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
intron-intron	ENST00000370479	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
In-frame	ENST00000505769	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
5CDS-intron	ENST00000505769	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
intron-3CDS	ENST00000457062	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
intron-intron	ENST00000457062	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
In-frame	ENST00000361499	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
5CDS-intron	ENST00000361499	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
In-frame	ENST00000505868	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
5CDS-intron	ENST00000505868	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
intron-3CDS	ENST00000508844	ENST00000421865		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
intron-intron	ENST00000508844	ENST00000498257		TCGA	RV	ESCA	TCGA-M9-A5M8-01A	FAM135A	chr6	71162274	+	LAMA2	chr6	129371063	+
5UTR-3CDS	ENST00000351960	ENST00000538872		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000351960	ENST00000326261		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-5UTR	ENST00000351960	ENST00000382841		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-intron	ENST00000351960	ENST00000537151		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000358965	ENST00000538872		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000358965	ENST00000326261		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-5UTR	ENST00000358965	ENST00000382841		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-intron	ENST00000358965	ENST00000537151		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000393695	ENST00000538872		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000393695	ENST00000326261		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-5UTR	ENST00000393695	ENST00000382841		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-intron	ENST00000393695	ENST00000537151		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000543450	ENST00000538872		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-3CDS	ENST00000543450	ENST00000326261		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-5UTR	ENST00000543450	ENST00000382841		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
5UTR-intron	ENST00000543450	ENST00000537151		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	NUMA1	chr11	71780888	-	IQSEC3	chr12	208312	+
In-frame	ENST00000490882	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000490882	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000490882	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000490882	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000490882	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000490882	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-3UTR	ENST00000490882	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000490882	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000490882	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000490882	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
In-frame	ENST00000429972	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000429972	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000429972	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000429972	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000429972	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000429972	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-3UTR	ENST00000429972	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000429972	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000429972	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000429972	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
In-frame	ENST00000295956	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000295956	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000295956	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000295956	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000295956	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000295956	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-3UTR	ENST00000295956	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000295956	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000295956	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000295956	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
In-frame	ENST00000358537	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000358537	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000358537	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000358537	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000358537	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000358537	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-3UTR	ENST00000358537	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000358537	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000358537	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000358537	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
In-frame	ENST00000357272	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000357272	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000357272	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000357272	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000357272	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000357272	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-3UTR	ENST00000357272	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000357272	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000357272	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000357272	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
In-frame	ENST00000348383	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000348383	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000348383	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000348383	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000348383	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000348383	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-3UTR	ENST00000348383	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-5UTR	ENST00000348383	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000348383	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
5CDS-intron	ENST00000348383	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-3CDS	ENST00000493452	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000493452	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000493452	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000493452	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000493452	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000493452	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-3UTR	ENST00000493452	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000493452	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-intron	ENST00000493452	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-intron	ENST00000493452	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-3CDS	ENST00000419752	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000419752	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000419752	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000419752	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000419752	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000419752	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-3UTR	ENST00000419752	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000419752	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-intron	ENST00000419752	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-intron	ENST00000419752	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-3CDS	ENST00000484981	ENST00000295951		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000484981	ENST00000416870		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000484981	ENST00000295952		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000484981	ENST00000383718		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000484981	ENST00000428312		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000484981	ENST00000449503		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-3UTR	ENST00000484981	ENST00000472546		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-5UTR	ENST00000484981	ENST00000442599		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-intron	ENST00000484981	ENST00000495364		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
intron-intron	ENST00000484981	ENST00000494088		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	FLNB	chr3	57994583	+	SLMAP	chr3	57875768	+
Frame-shit	ENST00000262510	ENST00000471389		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000262510	ENST00000394647		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000262510	ENST00000431610		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000262510	ENST00000460382		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000262510	ENST00000463855		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000262510	ENST00000472835		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
Frame-shit	ENST00000436936	ENST00000471389		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000436936	ENST00000394647		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000436936	ENST00000431610		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000436936	ENST00000460382		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000436936	ENST00000463855		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000436936	ENST00000472835		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
Frame-shit	ENST00000308149	ENST00000471389		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000308149	ENST00000394647		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000308149	ENST00000431610		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000308149	ENST00000460382		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000308149	ENST00000463855		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000308149	ENST00000472835		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000543141	ENST00000471389		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000543141	ENST00000394647		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000543141	ENST00000431610		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000543141	ENST00000460382		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
intron-3CDS	ENST00000543141	ENST00000463855		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
intron-3UTR	ENST00000543141	ENST00000472835		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
Frame-shit	ENST00000539144	ENST00000471389		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000539144	ENST00000394647		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000539144	ENST00000431610		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000539144	ENST00000460382		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
In-frame	ENST00000539144	ENST00000463855		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000539144	ENST00000472835		TCGA	RV	ESCA	TCGA-2H-A9GH-01A	NLRC5	chr16	57080553	+	FTO	chr16	54145674	+
Frame-shit	ENST00000356842	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5CDS-intron	ENST00000356842	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
Frame-shit	ENST00000359629	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5CDS-intron	ENST00000359629	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
Frame-shit	ENST00000538214	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5CDS-intron	ENST00000538214	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5UTR-3CDS	ENST00000537768	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5UTR-intron	ENST00000537768	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
Frame-shit	ENST00000335712	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5CDS-intron	ENST00000335712	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
intron-3CDS	ENST00000477659	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
intron-intron	ENST00000477659	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
Frame-shit	ENST00000358510	ENST00000361271		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5CDS-intron	ENST00000358510	ENST00000326961		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	BCL11A	chr2	60773106	-	PTPLA	chr10	17646046	-
5CDS-5UTR	ENST00000300413	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000300413	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000300413	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000300413	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000300413	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000579618	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000579618	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000579618	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000579618	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000579618	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5UTR-5UTR	ENST00000582475	ENST00000319481		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5UTR-intron	ENST00000582475	ENST00000399443		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5UTR-intron	ENST00000582475	ENST00000357041		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5UTR-5UTR	ENST00000582475	ENST00000399441		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5UTR-5UTR	ENST00000582475	ENST00000582618		TCGA	RV	ESCA	TCGA-L5-A4OF-01A	SNRPD1	chr18	19192404	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000356136	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000356136	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000356136	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000356136	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000356136	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000356136	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-intron	ENST00000356136	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5CDS-5UTR	ENST00000356136	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-intron	ENST00000528420	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-intron	ENST00000528420	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-5UTR	ENST00000528420	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-intron	ENST00000528420	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-intron	ENST00000528420	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-intron	ENST00000528420	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-intron	ENST00000528420	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
5UTR-5UTR	ENST00000528420	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000533454	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000533454	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000533454	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000533454	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000533454	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000533454	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000533454	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000533454	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000531818	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000531818	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000531818	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000531818	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000531818	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000531818	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000531818	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000531818	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000532130	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000532130	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000532130	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000532130	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000532130	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000532130	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000532130	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000532130	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539288	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539288	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000539288	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539288	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539288	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539288	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000539288	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000539288	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525872	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525872	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000525872	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525872	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525872	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525872	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000525872	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000525872	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000538870	ENST00000526660		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000538870	ENST00000289575		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000538870	ENST00000341411		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000538870	ENST00000532236		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000538870	ENST00000531756		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000538870	ENST00000525650		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-intron	ENST00000538870	ENST00000454962		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
intron-5UTR	ENST00000538870	ENST00000428359		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	UVRAG	chr11	75563045	+	SLCO2B1	chr11	74873700	+
3UTR-5UTR	ENST00000371471	ENST00000416600		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
3UTR-5UTR	ENST00000371471	ENST00000428216		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
3UTR-intron	ENST00000371471	ENST00000358134		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
3UTR-5UTR	ENST00000302342	ENST00000416600		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
3UTR-5UTR	ENST00000302342	ENST00000428216		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
3UTR-intron	ENST00000302342	ENST00000358134		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
intron-5UTR	ENST00000540425	ENST00000416600		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
intron-5UTR	ENST00000540425	ENST00000428216		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
intron-intron	ENST00000540425	ENST00000358134		TCGA	RV	ESCA	TCGA-IG-A50L-01A	ZNF217	chr20	52188260	-	MAVS	chr20	3841979	+
Frame-shit	ENST00000495893	ENST00000415807		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000495893	ENST00000336824		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000495893	ENST00000416957		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000392699		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000421757		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000423424		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000476794		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000494943	ENST00000415807		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000494943	ENST00000336824		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000494943	ENST00000416957		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000392699		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000421757		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000423424		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000476794		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000467570	ENST00000415807		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000467570	ENST00000336824		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000467570	ENST00000416957		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000392699		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000421757		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000423424		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000476794		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000474275	ENST00000415807		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000474275	ENST00000336824		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000474275	ENST00000416957		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000392699		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000421757		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000423424		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000476794		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000497658	ENST00000415807		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000497658	ENST00000336824		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000497658	ENST00000416957		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000392699		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000421757		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000423424		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000476794		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000481639	ENST00000415807		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000481639	ENST00000336824		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000481639	ENST00000416957		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000392699		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000421757		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000423424		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000476794		TCGA	RV	ESCA	TCGA-L5-A88S-01A	PHC3	chr3	169831148	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000427277	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000427277	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000297954	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000297954	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
3UTR-3CDS	ENST00000395475	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
3UTR-3CDS	ENST00000395475	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
5UTR-3CDS	ENST00000356055	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
5UTR-3CDS	ENST00000356055	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000349097	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000349097	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000395477	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000395477	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
intron-3CDS	ENST00000471076	ENST00000375472		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
intron-3CDS	ENST00000471076	ENST00000375469		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	WNK2	chr9	96031028	+	SUSD3	chr9	95838066	+
In-frame	ENST00000402693	ENST00000344749		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
In-frame	ENST00000402693	ENST00000262965		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000402693	ENST00000453954		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000402693	ENST00000395423		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000402693	ENST00000588136		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
In-frame	ENST00000388824	ENST00000344749		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
In-frame	ENST00000388824	ENST00000262965		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000388824	ENST00000453954		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000388824	ENST00000395423		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000388824	ENST00000588136		TCGA	RV	ESCA	TCGA-Q9-A6FU-01A	MEX3D	chr19	1567463	-	TCF3	chr19	1646426	-
Frame-shit	ENST00000264057	ENST00000409110		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
5CDS-intron	ENST00000264057	ENST00000461532		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
5CDS-intron	ENST00000264057	ENST00000449594		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
Frame-shit	ENST00000409813	ENST00000409110		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
5CDS-intron	ENST00000409813	ENST00000461532		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
5CDS-intron	ENST00000409813	ENST00000449594		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
intron-3CDS	ENST00000489613	ENST00000409110		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
intron-intron	ENST00000489613	ENST00000461532		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
intron-intron	ENST00000489613	ENST00000449594		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	DGKD	chr2	234299129	+	SAG	chr2	234243608	+
Frame-shit	ENST00000264033	ENST00000533632		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
In-frame	ENST00000264033	ENST00000528230		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
Frame-shit	ENST00000264033	ENST00000525303		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
Frame-shit	ENST00000264033	ENST00000434101		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
Frame-shit	ENST00000264033	ENST00000359005		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
5CDS-intron	ENST00000264033	ENST00000533058		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
5CDS-intron	ENST00000264033	ENST00000526141		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	CBL	chr11	119158656	+	TRAPPC4	chr11	118894031	+
In-frame	ENST00000396153	ENST00000372084		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
In-frame	ENST00000396153	ENST00000372086		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
In-frame	ENST00000396153	ENST00000341771		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-5UTR	ENST00000396153	ENST00000486676		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-5UTR	ENST00000396153	ENST00000538496		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-intron	ENST00000396153	ENST00000451835		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
Frame-shit	ENST00000371778	ENST00000372084		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
Frame-shit	ENST00000371778	ENST00000372086		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
Frame-shit	ENST00000371778	ENST00000341771		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-5UTR	ENST00000371778	ENST00000486676		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-5UTR	ENST00000371778	ENST00000538496		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-intron	ENST00000371778	ENST00000451835		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-3CDS	ENST00000545823	ENST00000372084		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-3CDS	ENST00000545823	ENST00000372086		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-3CDS	ENST00000545823	ENST00000341771		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-5UTR	ENST00000545823	ENST00000486676		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-5UTR	ENST00000545823	ENST00000538496		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-intron	ENST00000545823	ENST00000451835		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-3CDS	ENST00000472808	ENST00000372084		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-3CDS	ENST00000472808	ENST00000372086		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-3CDS	ENST00000472808	ENST00000341771		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-5UTR	ENST00000472808	ENST00000486676		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-5UTR	ENST00000472808	ENST00000538496		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
intron-intron	ENST00000472808	ENST00000451835		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	FAF1	chr1	51121114	-	TESK2	chr1	45821121	-
5CDS-intron	ENST00000343550	ENST00000303586		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000343550	ENST00000439785		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000343550	ENST00000601957		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000343550	ENST00000601142		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000343550	ENST00000426813		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000343550	ENST00000595818		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000303586		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000439785		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000601957		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000601142		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000222305	ENST00000426813		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000595818		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000303586		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000439785		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000601957		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000601142		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000595068	ENST00000426813		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000595818		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000379134	ENST00000303586		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000379134	ENST00000439785		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000379134	ENST00000601957		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000379134	ENST00000601142		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000379134	ENST00000426813		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000379134	ENST00000595818		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000303586		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000439785		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000601957		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000601142		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000594064	ENST00000426813		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000595818		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000303586		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000439785		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000601957		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000601142		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
intron-5UTR	ENST00000600341	ENST00000426813		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000595818		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760602	+	ZNF30	chr19	35433498	+
In-frame	ENST00000394440	ENST00000421745		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CCT4	chr2	62107421	-	BIRC6	chr2	32756422	+
intron-3CDS	ENST00000461540	ENST00000421745		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CCT4	chr2	62107421	-	BIRC6	chr2	32756422	+
In-frame	ENST00000544079	ENST00000421745		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CCT4	chr2	62107421	-	BIRC6	chr2	32756422	+
intron-3CDS	ENST00000544185	ENST00000421745		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CCT4	chr2	62107421	-	BIRC6	chr2	32756422	+
Frame-shit	ENST00000538252	ENST00000421745		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	CCT4	chr2	62107421	-	BIRC6	chr2	32756422	+
Frame-shit	ENST00000267615	ENST00000334746		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
Frame-shit	ENST00000267615	ENST00000554565		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000267615	ENST00000393170		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000267615	ENST00000298896		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000267615	ENST00000555525		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
Frame-shit	ENST00000354313	ENST00000334746		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
Frame-shit	ENST00000354313	ENST00000554565		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000354313	ENST00000393170		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000354313	ENST00000298896		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000354313	ENST00000555525		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
In-frame	ENST00000556603	ENST00000334746		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
In-frame	ENST00000556603	ENST00000554565		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000556603	ENST00000393170		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000556603	ENST00000298896		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000556603	ENST00000555525		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-3CDS	ENST00000555495	ENST00000334746		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-3CDS	ENST00000555495	ENST00000554565		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-intron	ENST00000555495	ENST00000393170		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-intron	ENST00000555495	ENST00000298896		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-intron	ENST00000555495	ENST00000555525		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-3CDS	ENST00000556954	ENST00000334746		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-3CDS	ENST00000556954	ENST00000554565		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-intron	ENST00000556954	ENST00000393170		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-intron	ENST00000556954	ENST00000298896		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
intron-intron	ENST00000556954	ENST00000555525		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	ITPK1	chr14	93542940	-	BTBD7	chr14	93730339	-
5CDS-intron	ENST00000397661	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000397661	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000397661	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000592199	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000592199	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000592199	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000587760	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000587760	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000587760	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000585575	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000585575	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000585575	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000360105	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000360105	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000360105	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000588228	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000588228	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000588228	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000587260	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000587260	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000587260	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000358552	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000358552	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000358552	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
intron-intron	ENST00000588680	ENST00000586702		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
intron-intron	ENST00000588680	ENST00000294618		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
intron-intron	ENST00000588680	ENST00000319867		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	NFIX	chr19	13136366	+	DOCK6	chr19	11364402	-
Frame-shit	ENST00000380737	ENST00000450849		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
Frame-shit	ENST00000380737	ENST00000301260		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000380737	ENST00000595916		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000380737	ENST00000398448		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000380737	ENST00000600960		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
Frame-shit	ENST00000315985	ENST00000450849		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
Frame-shit	ENST00000315985	ENST00000301260		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000315985	ENST00000595916		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000315985	ENST00000398448		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000315985	ENST00000600960		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
3UTR-3CDS	ENST00000523473	ENST00000450849		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
3UTR-3CDS	ENST00000523473	ENST00000301260		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
3UTR-intron	ENST00000523473	ENST00000595916		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
3UTR-intron	ENST00000523473	ENST00000398448		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
3UTR-intron	ENST00000523473	ENST00000600960		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	PPP2R2A	chr8	26151256	+	ATCAY	chr19	3913756	+
5CDS-intron	ENST00000368732	ENST00000587758		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000588426		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000356783		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000291901		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000536926		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000588981		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000587465		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000585321		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368732	ENST00000592920		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000587758		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000588426		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000356783		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000291901		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000536926		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000588981		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000587465		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000585321		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000368733	ENST00000592920		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000587758		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000588426		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000356783		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000291901		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000536926		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000588981		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000587465		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000585321		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000477801	ENST00000592920		TCGA	RV	ESCA	TCGA-IG-A5B8-01A	S100A8	chr1	153362508	-	TNNT1	chr19	55646910	-
In-frame	ENST00000246548	ENST00000264819		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
5CDS-5UTR	ENST00000246548	ENST00000592722		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
In-frame	ENST00000439527	ENST00000264819		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
5CDS-5UTR	ENST00000439527	ENST00000592722		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
intron-3CDS	ENST00000592791	ENST00000264819		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
intron-5UTR	ENST00000592791	ENST00000592722		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
intron-3CDS	ENST00000588585	ENST00000264819		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
intron-5UTR	ENST00000588585	ENST00000592722		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	UBA2	chr19	34941269	+	MIER2	chr19	334542	-
In-frame	ENST00000304239	ENST00000420980		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000304239	ENST00000412732		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000304239	ENST00000416611		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000304239	ENST00000414789		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000304239	ENST00000355526		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000304239	ENST00000456296		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000337995	ENST00000420980		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000337995	ENST00000412732		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000337995	ENST00000416611		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000337995	ENST00000414789		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000337995	ENST00000355526		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
In-frame	ENST00000337995	ENST00000456296		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
intron-3CDS	ENST00000586540	ENST00000420980		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
intron-3CDS	ENST00000586540	ENST00000412732		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
intron-3CDS	ENST00000586540	ENST00000416611		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
intron-3CDS	ENST00000586540	ENST00000414789		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
intron-3CDS	ENST00000586540	ENST00000355526		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
intron-3CDS	ENST00000586540	ENST00000456296		TCGA	RV	ESCA	TCGA-XP-A8T6-01A	ZNF420	chr19	37582023	+	DPF1	chr19	38704396	-
5CDS-intron	ENST00000415807	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000415807	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000336824	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000416957	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000392699	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000421757	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5CDS-intron	ENST00000423424	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000436636		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000538048		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000369326		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000341852		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000284483		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000470834		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000460047		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000475336		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000488470		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000357327		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000464785		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
intron-intron	ENST00000476794	ENST00000465393		TCGA	RV	ESCA	TCGA-L5-A88S-01A	FNDC3B	chr3	171851336	+	TNIK	chr3	171065007	-
5UTR-5UTR	ENST00000252577	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
5UTR-5UTR	ENST00000252577	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
5UTR-5UTR	ENST00000360315	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
5UTR-5UTR	ENST00000360315	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
5UTR-5UTR	ENST00000537887	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
5UTR-5UTR	ENST00000537887	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000404158	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000404158	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000358713	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000358713	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000429563	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000429563	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000473184	ENST00000243644		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000473184	ENST00000600703		TCGA	RV	ESCA	TCGA-L5-A891-01A	GATAD2A	chr19	19496947	+	ZNF350	chr19	52477784	-
5UTR-3CDS	ENST00000340645	ENST00000310864		TCGA	RV	ESCA	TCGA-LN-A5U7-01A	GOLGB1	chr3	121468479	-	IQCB1	chr3	121491560	-
5UTR-3CDS	ENST00000340645	ENST00000349820		TCGA	RV	ESCA	TCGA-LN-A5U7-01A	GOLGB1	chr3	121468479	-	IQCB1	chr3	121491560	-
5UTR-3CDS	ENST00000393667	ENST00000310864		TCGA	RV	ESCA	TCGA-LN-A5U7-01A	GOLGB1	chr3	121468479	-	IQCB1	chr3	121491560	-
5UTR-3CDS	ENST00000393667	ENST00000349820		TCGA	RV	ESCA	TCGA-LN-A5U7-01A	GOLGB1	chr3	121468479	-	IQCB1	chr3	121491560	-
intron-3CDS	ENST00000472829	ENST00000310864		TCGA	RV	ESCA	TCGA-LN-A5U7-01A	GOLGB1	chr3	121468479	-	IQCB1	chr3	121491560	-
intron-3CDS	ENST00000472829	ENST00000349820		TCGA	RV	ESCA	TCGA-LN-A5U7-01A	GOLGB1	chr3	121468479	-	IQCB1	chr3	121491560	-
In-frame	ENST00000328827	ENST00000261207		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
In-frame	ENST00000328827	ENST00000450142		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
In-frame	ENST00000328827	ENST00000437004		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5CDS-5UTR	ENST00000328827	ENST00000546369		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5CDS-5UTR	ENST00000328827	ENST00000550107		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5UTR-3CDS	ENST00000547571	ENST00000261207		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5UTR-3CDS	ENST00000547571	ENST00000450142		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5UTR-3CDS	ENST00000547571	ENST00000437004		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5UTR-5UTR	ENST00000547571	ENST00000546369		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
5UTR-5UTR	ENST00000547571	ENST00000550107		TCGA	RV	ESCA	TCGA-JY-A938-01A	PAWR	chr12	80083509	-	PPP1R12A	chr12	80266718	-
intron-5UTR	ENST00000427662	ENST00000224950		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000427662	ENST00000369764		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000369774	ENST00000224950		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000369774	ENST00000369764		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000355946	ENST00000224950		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000355946	ENST00000369764		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000315994	ENST00000224950		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000315994	ENST00000369764		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000540321	ENST00000224950		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000540321	ENST00000369764		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000538130	ENST00000224950		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000538130	ENST00000369764		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105677414	-
In-frame	ENST00000533820	ENST00000265755		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533820	ENST00000455841		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533820	ENST00000424337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533820	ENST00000476977		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
5CDS-3UTR	ENST00000533820	ENST00000489094		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533129	ENST00000265755		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533129	ENST00000455841		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533129	ENST00000424337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000533129	ENST00000476977		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
5CDS-3UTR	ENST00000533129	ENST00000489094		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000524773	ENST00000265755		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000524773	ENST00000455841		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000524773	ENST00000424337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000524773	ENST00000476977		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
5CDS-3UTR	ENST00000524773	ENST00000489094		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000279247	ENST00000265755		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000279247	ENST00000455841		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000279247	ENST00000424337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000279247	ENST00000476977		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
5CDS-3UTR	ENST00000279247	ENST00000489094		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
intron-3CDS	ENST00000527469	ENST00000265755		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
intron-3CDS	ENST00000527469	ENST00000455841		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
intron-3CDS	ENST00000527469	ENST00000424337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
intron-3CDS	ENST00000527469	ENST00000476977		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
intron-3UTR	ENST00000527469	ENST00000489094		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000527323	ENST00000265755		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000527323	ENST00000455841		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000527323	ENST00000424337		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
In-frame	ENST00000527323	ENST00000476977		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
5CDS-3UTR	ENST00000527323	ENST00000489094		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CAPN1	chr11	64973192	+	GTF2IRD1	chr7	73927160	+
Frame-shit	ENST00000352035	ENST00000450114		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000352035	ENST00000299613		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000590151	ENST00000450114		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000590151	ENST00000299613		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000353196	ENST00000450114		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000353196	ENST00000299613		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000537919	ENST00000450114		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000537919	ENST00000299613		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000393896	ENST00000450114		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
Frame-shit	ENST00000393896	ENST00000299613		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
intron-3CDS	ENST00000588779	ENST00000450114		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
intron-3CDS	ENST00000588779	ENST00000299613		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	ACLY	chr17	40030064	-	WEE1	chr11	9609996	+
5UTR-3CDS	ENST00000321599	ENST00000333486		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
5UTR-intron	ENST00000321599	ENST00000494212		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
5UTR-3CDS	ENST00000395238	ENST00000333486		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
5UTR-intron	ENST00000395238	ENST00000494212		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
5UTR-3CDS	ENST00000468463	ENST00000333486		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
5UTR-intron	ENST00000468463	ENST00000494212		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
intron-3CDS	ENST00000460540	ENST00000333486		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
intron-intron	ENST00000460540	ENST00000494212		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
intron-3CDS	ENST00000498149	ENST00000333486		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
intron-intron	ENST00000498149	ENST00000494212		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	IP6K1	chr3	49823787	-	UBA7	chr3	49847616	-
5CDS-5UTR	ENST00000293218	ENST00000314256		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000293218	ENST00000579208		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000293218	ENST00000375248		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000293218	ENST00000583795		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000589666	ENST00000314256		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000589666	ENST00000579208		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000589666	ENST00000375248		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000589666	ENST00000583795		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
Frame-shit	ENST00000327064	ENST00000599111		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000327064	ENST00000354276		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000327064	ENST00000413144		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000327064	ENST00000599921		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
5CDS-5UTR	ENST00000327064	ENST00000596510		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000344150	ENST00000599111		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000344150	ENST00000354276		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000344150	ENST00000413144		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
Frame-shit	ENST00000344150	ENST00000599921		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
5CDS-5UTR	ENST00000344150	ENST00000596510		TCGA	RV	ESCA	TCGA-L5-A891-01A	CARM1	chr19	10982598	+	PLA2G4C	chr19	48558306	-
5UTR-3CDS	ENST00000586178	ENST00000394121		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000586178	ENST00000264637		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000586178	ENST00000584985		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000586178	ENST00000450525		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000586178	ENST00000546243		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000415868	ENST00000394121		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000415868	ENST00000264637		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000415868	ENST00000584985		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000415868	ENST00000450525		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000415868	ENST00000546243		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000376381	ENST00000394121		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000376381	ENST00000264637		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000376381	ENST00000584985		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000376381	ENST00000450525		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
5UTR-3CDS	ENST00000376381	ENST00000546243		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000593259	ENST00000394121		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000593259	ENST00000264637		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000593259	ENST00000584985		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000593259	ENST00000450525		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
intron-3CDS	ENST00000593259	ENST00000546243		TCGA	RV	ESCA	TCGA-L5-A8NG-01A	MBTD1	chr17	49336504	-	THRA	chr17	38240088	+
In-frame	ENST00000202556	ENST00000261699		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
In-frame	ENST00000202556	ENST00000267436		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
In-frame	ENST00000202556	ENST00000421284		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
In-frame	ENST00000202556	ENST00000555423		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
Frame-shit	ENST00000202556	ENST00000555610		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
5CDS-intron	ENST00000202556	ENST00000556393		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000423488	ENST00000261699		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000423488	ENST00000267436		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000423488	ENST00000421284		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000423488	ENST00000555423		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000423488	ENST00000555610		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-intron	ENST00000423488	ENST00000556393		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000555391	ENST00000261699		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000555391	ENST00000267436		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000555391	ENST00000421284		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000555391	ENST00000555423		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-3CDS	ENST00000555391	ENST00000555610		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
intron-intron	ENST00000555391	ENST00000556393		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PPP1R13B	chr14	104313636	-	L2HGDH	chr14	50750751	-
In-frame	ENST00000545260	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545260	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000545260	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000545260	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000545693	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000545693	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000545693	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000350537	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000350537	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000350537	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000346874	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000346874	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000346874	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374789	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374789	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374789	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374790	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374790	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374790	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374794	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374794	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374794	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374788	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374788	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374788	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000466092	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-intron	ENST00000466092	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-intron	ENST00000466092	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374776	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374776	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374776	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000340077	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000340077	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000340077	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000544292	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-intron	ENST00000544292	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-intron	ENST00000544292	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
In-frame	ENST00000374773	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374773	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
5CDS-intron	ENST00000374773	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000342183		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000401710		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000404971		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000406316		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000405472		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000401669		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000406859		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-3CDS	ENST00000374768	ENST00000402717		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-intron	ENST00000374768	ENST00000331040		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
intron-intron	ENST00000374768	ENST00000405581		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	PARD3	chr10	34985246	-	NRXN1	chr2	50318632	-
Frame-shit	ENST00000264935	ENST00000512944		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
5CDS-intron	ENST00000264935	ENST00000510441		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
5CDS-intron	ENST00000264935	ENST00000315013		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
3UTR-3CDS	ENST00000444221	ENST00000512944		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
3UTR-intron	ENST00000444221	ENST00000510441		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
3UTR-intron	ENST00000444221	ENST00000315013		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
intron-3CDS	ENST00000514507	ENST00000512944		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
intron-intron	ENST00000514507	ENST00000510441		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
intron-intron	ENST00000514507	ENST00000315013		TCGA	RV	ESCA	TCGA-V5-AASW-01A	CEP72	chr5	648031	+	EXOC3	chr5	453485	+
5UTR-3CDS	ENST00000227495	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
5UTR-3CDS	ENST00000444328	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
5UTR-3CDS	ENST00000356132	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000530591	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000534083	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000392669	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000526756	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000526727	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000449406	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000532243	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000534457	ENST00000294312		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126225737	+	FGF19	chr11	69518132	-
Frame-shit	ENST00000524630	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000524630	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000524630	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000524630	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000524630	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000524630	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000524630	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000524630	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529919	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529919	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529919	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529919	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529919	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529919	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529919	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529919	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399039	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399039	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399039	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399039	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399039	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399039	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000399039	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000399039	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000360682	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000360682	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000360682	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000360682	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000360682	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000360682	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000360682	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000360682	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361796	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361796	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361796	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361796	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361796	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361796	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000361796	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000361796	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361391	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361391	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361391	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361391	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361391	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361391	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000361391	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000361391	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530094	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530094	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530094	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530094	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530094	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530094	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000530094	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000530094	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000428599	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000428599	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000428599	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000428599	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000428599	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000428599	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000428599	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000428599	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361332	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361332	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361332	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361332	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361332	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000361332	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000361332	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000361332	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000527467	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000527467	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000527467	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000527467	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000527467	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000527467	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000527467	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000527467	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000415361	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000415361	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000415361	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000415361	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000415361	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000415361	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000415361	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000415361	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532245	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532245	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532245	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532245	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532245	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532245	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532245	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532245	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532463	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532463	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532463	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532463	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532463	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532463	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532463	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532463	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528232	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528232	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528232	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528232	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528232	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528232	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000528232	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000528232	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529986	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529986	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529986	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529986	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529986	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529986	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529986	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529986	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000531014	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000531014	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000531014	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000531014	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000531014	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000531014	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000531014	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000531014	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000358694	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000358694	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000358694	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000358694	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000358694	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000358694	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000358694	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000358694	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526772	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526772	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526772	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526772	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526772	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526772	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000526772	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000526772	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532787	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532787	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532787	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532787	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532787	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532787	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532787	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532787	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000533667	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000533667	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000533667	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000533667	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000533667	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000533667	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000533667	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000533667	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529873	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529873	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529873	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529873	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529873	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529873	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529873	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529873	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000525902	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000525902	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000525902	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000525902	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000525902	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000525902	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000525902	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000525902	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529526	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529526	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529526	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529526	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529526	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000529526	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529526	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000529526	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532649	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532649	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532649	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532649	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532649	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532649	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532649	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532649	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000426142	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000426142	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000426142	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000426142	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000426142	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000426142	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000426142	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000426142	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532844	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532844	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532844	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532844	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532844	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000532844	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532844	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000532844	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528621	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528621	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528621	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528621	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528621	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000528621	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000528621	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000528621	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399050	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399050	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399050	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399050	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399050	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000399050	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000399050	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000399050	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526357	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526357	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526357	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526357	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526357	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526357	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000526357	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000526357	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530748	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530748	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530748	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530748	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530748	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000530748	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000530748	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000530748	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000534579	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000534579	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000534579	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000534579	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000534579	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000534579	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000534579	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000534579	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526938	ENST00000294053		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526938	ENST00000538039		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526938	ENST00000437826		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526938	ENST00000340729		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526938	ENST00000543042		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
Frame-shit	ENST00000526938	ENST00000445069		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000526938	ENST00000538021		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5CDS-intron	ENST00000526938	ENST00000542555		TCGA	RV	ESCA	TCGA-L5-A4OO-01A	CTNND1	chr11	57577695	+	CLPB	chr11	72091428	-
5UTR-3CDS	ENST00000303657	ENST00000252674		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
5UTR-intron	ENST00000303657	ENST00000585588		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
intron-3CDS	ENST00000359161	ENST00000252674		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
intron-intron	ENST00000359161	ENST00000585588		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
5UTR-3CDS	ENST00000592546	ENST00000252674		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
5UTR-intron	ENST00000592546	ENST00000585588		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
intron-3CDS	ENST00000587700	ENST00000252674		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
intron-intron	ENST00000587700	ENST00000585588		TCGA	RV	ESCA	TCGA-Z6-A8JD-01A	RFX2	chr19	6110404	-	MLLT1	chr19	6230724	-
In-frame	ENST00000368685	ENST00000331495		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
In-frame	ENST00000368685	ENST00000328118		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
5CDS-intron	ENST00000368685	ENST00000592006		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
5CDS-intron	ENST00000368685	ENST00000587489		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
3UTR-3CDS	ENST00000478558	ENST00000331495		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
3UTR-3CDS	ENST00000478558	ENST00000328118		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
3UTR-intron	ENST00000478558	ENST00000592006		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
3UTR-intron	ENST00000478558	ENST00000587489		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	SNAPIN	chr1	153632042	+	FMNL1	chr17	43317843	+
5CDS-intron	ENST00000287652	ENST00000287647		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000287652	ENST00000383807		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-3UTR	ENST00000287652	ENST00000383806		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-3UTR	ENST00000287652	ENST00000419585		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000287652	ENST00000431693		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000287652	ENST00000438741		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000448281	ENST00000287647		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000448281	ENST00000383807		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-3UTR	ENST00000448281	ENST00000383806		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-3UTR	ENST00000448281	ENST00000419585		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000448281	ENST00000431693		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
5CDS-intron	ENST00000448281	ENST00000438741		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-intron	ENST00000496355	ENST00000287647		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-intron	ENST00000496355	ENST00000383807		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-3UTR	ENST00000496355	ENST00000383806		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-3UTR	ENST00000496355	ENST00000419585		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-intron	ENST00000496355	ENST00000431693		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-intron	ENST00000496355	ENST00000438741		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TATDN2	chr3	10291298	+	FANCD2	chr3	10142872	+
intron-3CDS	ENST00000430069	ENST00000292782		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	DCUN1D1	chr3	182683541	-
intron-5UTR	ENST00000430069	ENST00000469954		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	DCUN1D1	chr3	182683541	-
5UTR-3CDS	ENST00000457928	ENST00000292782		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	DCUN1D1	chr3	182683541	-
5UTR-5UTR	ENST00000457928	ENST00000469954		TCGA	RV	ESCA	TCGA-LN-A8I1-01A	TBL1XR1	chr3	176914909	-	DCUN1D1	chr3	182683541	-
Frame-shit	ENST00000258534	ENST00000266743		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	DRAM1	chr12	102271698	+	SYCP3	chr12	102128822	-
Frame-shit	ENST00000258534	ENST00000392927		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	DRAM1	chr12	102271698	+	SYCP3	chr12	102128822	-
Frame-shit	ENST00000258534	ENST00000392924		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	DRAM1	chr12	102271698	+	SYCP3	chr12	102128822	-
Frame-shit	ENST00000544152	ENST00000266743		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	DRAM1	chr12	102271698	+	SYCP3	chr12	102128822	-
Frame-shit	ENST00000544152	ENST00000392927		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	DRAM1	chr12	102271698	+	SYCP3	chr12	102128822	-
Frame-shit	ENST00000544152	ENST00000392924		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	DRAM1	chr12	102271698	+	SYCP3	chr12	102128822	-
5UTR-5UTR	ENST00000430629	ENST00000361157		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	WASF2	chr1	27816497	-	IFI6	chr1	27995857	-
5UTR-5UTR	ENST00000430629	ENST00000339145		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	WASF2	chr1	27816497	-	IFI6	chr1	27995857	-
5UTR-5UTR	ENST00000430629	ENST00000362020		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	WASF2	chr1	27816497	-	IFI6	chr1	27995857	-
5UTR-5UTR	ENST00000536657	ENST00000361157		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	WASF2	chr1	27816497	-	IFI6	chr1	27995857	-
5UTR-5UTR	ENST00000536657	ENST00000339145		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	WASF2	chr1	27816497	-	IFI6	chr1	27995857	-
5UTR-5UTR	ENST00000536657	ENST00000362020		TCGA	RV	ESCA	TCGA-VR-A8EX-01A	WASF2	chr1	27816497	-	IFI6	chr1	27995857	-
Frame-shit	ENST00000340647	ENST00000393600		TCGA	RV	ESCA	TCGA-LN-A49L-01A	BRCC3	chrX	154306978	+	FAM50A	chrX	153673981	+
Frame-shit	ENST00000330045	ENST00000393600		TCGA	RV	ESCA	TCGA-LN-A49L-01A	BRCC3	chrX	154306978	+	FAM50A	chrX	153673981	+
Frame-shit	ENST00000369459	ENST00000393600		TCGA	RV	ESCA	TCGA-LN-A49L-01A	BRCC3	chrX	154306978	+	FAM50A	chrX	153673981	+
Frame-shit	ENST00000369462	ENST00000393600		TCGA	RV	ESCA	TCGA-LN-A49L-01A	BRCC3	chrX	154306978	+	FAM50A	chrX	153673981	+
Frame-shit	ENST00000399042	ENST00000393600		TCGA	RV	ESCA	TCGA-LN-A49L-01A	BRCC3	chrX	154306978	+	FAM50A	chrX	153673981	+
In-frame	ENST00000372396	ENST00000372470		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	KDM4A	chr1	44169783	+	MPL	chr1	43805635	+
In-frame	ENST00000372396	ENST00000413998		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	KDM4A	chr1	44169783	+	MPL	chr1	43805635	+
intron-3CDS	ENST00000463151	ENST00000372470		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	KDM4A	chr1	44169783	+	MPL	chr1	43805635	+
intron-3CDS	ENST00000463151	ENST00000413998		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	KDM4A	chr1	44169783	+	MPL	chr1	43805635	+
5CDS-3UTR	ENST00000397786	ENST00000578382		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MED13	chr17	60140428	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000397786	ENST00000583560		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MED13	chr17	60140428	-	MYO15B	chr17	73606247	+
intron-3UTR	ENST00000580896	ENST00000578382		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MED13	chr17	60140428	-	MYO15B	chr17	73606247	+
intron-3UTR	ENST00000580896	ENST00000583560		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MED13	chr17	60140428	-	MYO15B	chr17	73606247	+
5UTR-3CDS	ENST00000453658	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000453658	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000453658	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-5UTR	ENST00000453658	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000377259	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000377259	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000377259	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
5UTR-5UTR	ENST00000377259	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000377245	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000377245	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000377245	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000377245	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000348208	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000348208	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000348208	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000348208	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000265384	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000265384	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000265384	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000265384	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000535702	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000535702	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000535702	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000535702	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000539225	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000539225	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000539225	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000539225	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000498204	ENST00000396364		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000498204	ENST00000377270		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000498204	ENST00000396366		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-5UTR	ENST00000498204	ENST00000498653		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TJP2	chr9	71766687	+	FXN	chr9	71661301	+
intron-3CDS	ENST00000375789	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000375789	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000375789	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000375789	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000480913	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000480913	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000480913	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000480913	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000375787	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000375787	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000375787	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375787	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000375792	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000375792	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000375792	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-intron	ENST00000375792	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000443533	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000443533	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000443533	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000443533	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000493926	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000493926	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000493926	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000493926	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000413532	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000413532	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000413532	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413532	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000411456	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000411456	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000411456	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000411456	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000451411	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000451411	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000451411	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000451411	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000488668	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000488668	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000488668	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000488668	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000430482	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000430482	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000430482	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000430482	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000437889	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000437889	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000437889	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000437889	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000414455	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000414455	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000414455	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000414455	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000490871	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000490871	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000490871	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000490871	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000444699	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000444699	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000444699	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000444699	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000454138	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000454138	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000454138	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000454138	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000400062	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000400062	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000400062	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400062	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000466207	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000466207	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000466207	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000466207	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000383409	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000383409	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000383409	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000383409	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000400063	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000400063	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000400063	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000400063	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000413655	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000413655	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000413655	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000413655	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000494351	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000494351	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000494351	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000494351	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000424790	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000424790	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000424790	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000424790	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000447101	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000447101	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000447101	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000447101	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000427126	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000427126	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000427126	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000427126	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000473167	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000473167	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000473167	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000473167	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000426149	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000426149	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000426149	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000426149	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000434464	ENST00000229729		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000434464	ENST00000544672		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-3CDS	ENST00000434464	ENST00000375562		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000465707		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000417894		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000550821		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000550401		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000492911		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000453831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000546461		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000551168		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000495620		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000425238		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000548188		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000549663		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000469478		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000415517		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000547288		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000547493		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000463111		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000383379		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000547684		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000549677		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000497745		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000366281		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000442152		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000553147		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000553121		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
intron-intron	ENST00000434464	ENST00000495181		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	DDAH2	chr6	31697828	-	SLC44A4	chr6	31833561	-
5UTR-3CDS	ENST00000319592	ENST00000295974		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000319592	ENST00000513140		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000319592	ENST00000508593		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000319592	ENST00000506352		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-intron	ENST00000319592	ENST00000511572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000319592	ENST00000543538		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000319592	ENST00000502841		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000319592	ENST00000504305		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000295974		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000513140		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000508593		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000506352		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000381793	ENST00000511572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381793	ENST00000543538		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381793	ENST00000502841		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381793	ENST00000504305		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000295974		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000513140		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000508593		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000506352		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000381795	ENST00000511572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381795	ENST00000543538		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381795	ENST00000502841		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381795	ENST00000504305		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000295974		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000513140		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000508593		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000506352		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-intron	ENST00000295971	ENST00000511572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000295971	ENST00000543538		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000295971	ENST00000502841		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000295971	ENST00000504305		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000295974		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000513140		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000508593		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000506352		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000514014	ENST00000511572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000514014	ENST00000543538		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000514014	ENST00000502841		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000514014	ENST00000504305		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000295974		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000513140		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000508593		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000506352		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000515809	ENST00000511572		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000515809	ENST00000543538		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000515809	ENST00000502841		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000515809	ENST00000504305		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000388890	ENST00000310581		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000388890	ENST00000296820		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000388890	ENST00000334602		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000388890	ENST00000508104		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-intron	ENST00000388890	ENST00000522877		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000310581		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000296820		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000334602		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000508104		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-intron	ENST00000323510	ENST00000522877		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
Frame-shit	ENST00000483173	ENST00000310581		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
In-frame	ENST00000483173	ENST00000296820		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
Frame-shit	ENST00000483173	ENST00000334602		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
Frame-shit	ENST00000483173	ENST00000508104		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000483173	ENST00000522877		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
In-frame	ENST00000467963	ENST00000310581		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
Frame-shit	ENST00000467963	ENST00000296820		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
In-frame	ENST00000467963	ENST00000334602		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
In-frame	ENST00000467963	ENST00000508104		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000467963	ENST00000522877		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000435709	ENST00000310581		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000435709	ENST00000296820		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000435709	ENST00000334602		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000435709	ENST00000508104		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
5UTR-intron	ENST00000435709	ENST00000522877		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000310581		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000296820		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000334602		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000508104		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
intron-intron	ENST00000494422	ENST00000522877		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	891270	-	TERT	chr5	1282739	-
In-frame	ENST00000357674	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000357674	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000357674	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000357674	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000357674	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000314062	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000314062	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000314062	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000314062	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000314062	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000346964	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000346964	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000346964	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000346964	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000346964	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000419354	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000419354	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000419354	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000419354	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000419354	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000452595	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000452595	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000452595	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000452595	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-intron	ENST00000452595	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000422288	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000422288	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000422288	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000422288	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000422288	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000448528	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000448528	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000448528	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000448528	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000448528	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000443183	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000443183	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000443183	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-3CDS	ENST00000443183	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
intron-intron	ENST00000443183	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000450955	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000450955	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000450955	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000450955	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000450955	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000392382	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000392382	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000392382	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
In-frame	ENST00000392382	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000392382	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000485409	ENST00000392379		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000485409	ENST00000392378		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000485409	ENST00000358186		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000485409	ENST00000441275		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5UTR-intron	ENST00000485409	ENST00000476764		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	DLG1	chr3	197009550	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000322349	ENST00000548946		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000322349	ENST00000318066		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000322349	ENST00000550657		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000322349	ENST00000549833		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000322349	ENST00000552442		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000547833	ENST00000548946		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000547833	ENST00000318066		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000547833	ENST00000550657		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000547833	ENST00000549833		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000547833	ENST00000552442		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	EEA1	chr12	93322819	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000352035	ENST00000302584		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACLY	chr17	40039375	-	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000590151	ENST00000302584		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACLY	chr17	40039375	-	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000353196	ENST00000302584		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACLY	chr17	40039375	-	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000537919	ENST00000302584		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACLY	chr17	40039375	-	NEUROD2	chr17	37762857	-
5CDS-5UTR	ENST00000393896	ENST00000302584		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACLY	chr17	40039375	-	NEUROD2	chr17	37762857	-
intron-5UTR	ENST00000588779	ENST00000302584		TCGA	RV	ESCA	TCGA-VR-AA4D-01A	ACLY	chr17	40039375	-	NEUROD2	chr17	37762857	-
5CDS-intron	ENST00000336761	ENST00000589160		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000336761	ENST00000337433		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000336761	ENST00000588883		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000336761	ENST00000413984		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000336761	ENST00000588742		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000336761	ENST00000300823		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000336761	ENST00000588795		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000336761	ENST00000590089		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000336761	ENST00000454662		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000233078	ENST00000589160		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000233078	ENST00000337433		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000233078	ENST00000588883		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000233078	ENST00000413984		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000233078	ENST00000588742		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-3UTR	ENST00000233078	ENST00000300823		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000233078	ENST00000588795		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000233078	ENST00000590089		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
5CDS-intron	ENST00000233078	ENST00000454662		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-intron	ENST00000586579	ENST00000589160		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-intron	ENST00000586579	ENST00000337433		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-3UTR	ENST00000586579	ENST00000588883		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-3UTR	ENST00000586579	ENST00000413984		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-3UTR	ENST00000586579	ENST00000588742		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-3UTR	ENST00000586579	ENST00000300823		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-intron	ENST00000586579	ENST00000588795		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-intron	ENST00000586579	ENST00000590089		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
3UTR-intron	ENST00000586579	ENST00000454662		TCGA	RV	ESCA	TCGA-L5-A891-01A	DAZAP1	chr19	1422395	+	ZNF226	chr19	44679137	+
In-frame	ENST00000319349	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000319349	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
In-frame	ENST00000393664	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000393664	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000538265	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000538265	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000545954	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000545954	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
In-frame	ENST00000545089	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000545089	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
In-frame	ENST00000591713	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000591713	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
intron-3CDS	ENST00000586826	ENST00000309889		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
intron-3CDS	ENST00000586826	ENST00000578283		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	ETV4	chr17	41610042	-	TCAP	chr17	37821969	+
Frame-shit	ENST00000262065	ENST00000225983		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
Frame-shit	ENST00000262065	ENST00000393622		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
Frame-shit	ENST00000262065	ENST00000336057		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
Frame-shit	ENST00000262065	ENST00000586802		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
5UTR-3CDS	ENST00000577038	ENST00000225983		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
5UTR-3CDS	ENST00000577038	ENST00000393622		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
5UTR-3CDS	ENST00000577038	ENST00000336057		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
5UTR-3CDS	ENST00000577038	ENST00000586802		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	MMD	chr17	53499031	-	HDAC5	chr17	42165966	-
In-frame	ENST00000219368	ENST00000319410		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FA2H	chr16	74773921	-	KARS	chr16	75665753	-
In-frame	ENST00000219368	ENST00000302445		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FA2H	chr16	74773921	-	KARS	chr16	75665753	-
5CDS-intron	ENST00000219368	ENST00000568378		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FA2H	chr16	74773921	-	KARS	chr16	75665753	-
5UTR-3CDS	ENST00000544337	ENST00000319410		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FA2H	chr16	74773921	-	KARS	chr16	75665753	-
5UTR-3CDS	ENST00000544337	ENST00000302445		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FA2H	chr16	74773921	-	KARS	chr16	75665753	-
5UTR-intron	ENST00000544337	ENST00000568378		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	FA2H	chr16	74773921	-	KARS	chr16	75665753	-
5CDS-intron	ENST00000373095	ENST00000533988		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000524490		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000334736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000343878		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000525959		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000533248		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000525919		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000524767		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000525038		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-intron	ENST00000373095	ENST00000529032		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000533988		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000524490		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000334736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000343878		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000525959		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000533248		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000525919		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000524767		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000525038		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000373084	ENST00000529032		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000533988		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000524490		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000334736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000343878		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000525959		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000533248		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000525919		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000524767		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000525038		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
intron-intron	ENST00000300434	ENST00000529032		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	FAM102A	chr9	130742271	-	C11orf30	chr11	76255303	+
5CDS-5UTR	ENST00000268933	ENST00000291572		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000268933	ENST00000398061		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000268933	ENST00000327505		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000268933	ENST00000398063		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000268933	ENST00000398058		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000268933	ENST00000546158		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-intron	ENST00000268933	ENST00000479117		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000515028	ENST00000291572		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000515028	ENST00000398061		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000515028	ENST00000327505		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000515028	ENST00000398063		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000515028	ENST00000398058		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000515028	ENST00000546158		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
intron-intron	ENST00000515028	ENST00000479117		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000541226	ENST00000291572		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000541226	ENST00000398061		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000541226	ENST00000327505		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000541226	ENST00000398063		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000541226	ENST00000398058		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000541226	ENST00000546158		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-intron	ENST00000541226	ENST00000479117		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000537145	ENST00000291572		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000537145	ENST00000398061		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000537145	ENST00000327505		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000537145	ENST00000398063		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000537145	ENST00000398058		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000537145	ENST00000546158		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
5CDS-intron	ENST00000537145	ENST00000479117		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	EPN3	chr17	48616676	+	AGPAT3	chr21	45379515	+
Frame-shit	ENST00000335681	ENST00000337959		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000335681	ENST00000263246		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000335681	ENST00000407585		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000335681	ENST00000403744		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000335681	ENST00000402229		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000542504	ENST00000337959		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000542504	ENST00000263246		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000542504	ENST00000407585		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000542504	ENST00000403744		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
Frame-shit	ENST00000542504	ENST00000402229		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
intron-3CDS	ENST00000486017	ENST00000337959		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
intron-3CDS	ENST00000486017	ENST00000263246		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
intron-3CDS	ENST00000486017	ENST00000407585		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
intron-3CDS	ENST00000486017	ENST00000403744		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
intron-3CDS	ENST00000486017	ENST00000402229		TCGA	RV	ESCA	TCGA-VR-A8EY-01A	NPAS2	chr2	101521248	+	PACSIN2	chr22	43284804	-
In-frame	ENST00000216455	ENST00000254286		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	PSMA3	chr14	58734238	+	ACTR10	chr14	58669573	+
In-frame	ENST00000412908	ENST00000254286		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	PSMA3	chr14	58734238	+	ACTR10	chr14	58669573	+
In-frame	ENST00000557508	ENST00000254286		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	PSMA3	chr14	58734238	+	ACTR10	chr14	58669573	+
intron-3CDS	ENST00000554456	ENST00000254286		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	PSMA3	chr14	58734238	+	ACTR10	chr14	58669573	+
In-frame	ENST00000368226	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368226	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368227	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368227	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000532331	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000532331	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368213	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368213	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368210	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368210	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368215	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368215	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368207	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368207	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000525459	ENST00000356698		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000525459	ENST00000368317		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	ESCA	TCGA-JY-A938-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000543117	ENST00000539406		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000543117	ENST00000222792		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000543117	ENST00000435288		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000543117	ENST00000495789		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000543117	ENST00000539389		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000543117	ENST00000546235		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000543117	ENST00000409041		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000543117	ENST00000424025		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000543117	ENST00000439711		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000543117	ENST00000421775		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000543117	ENST00000410098		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265393	ENST00000539406		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265393	ENST00000222792		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265393	ENST00000435288		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265393	ENST00000495789		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265393	ENST00000539389		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265393	ENST00000546235		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000265393	ENST00000409041		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000265393	ENST00000424025		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000265393	ENST00000439711		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000265393	ENST00000421775		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000265393	ENST00000410098		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000409980	ENST00000539406		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000409980	ENST00000222792		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000409980	ENST00000435288		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000409980	ENST00000495789		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000409980	ENST00000539389		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000409980	ENST00000546235		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000409980	ENST00000409041		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000409980	ENST00000424025		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000409980	ENST00000439711		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000409980	ENST00000421775		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000409980	ENST00000410098		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000433216	ENST00000539406		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000433216	ENST00000222792		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000433216	ENST00000435288		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000433216	ENST00000495789		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000433216	ENST00000539389		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000433216	ENST00000546235		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000433216	ENST00000409041		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000433216	ENST00000424025		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000433216	ENST00000439711		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000433216	ENST00000421775		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000433216	ENST00000410098		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000396319	ENST00000539406		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000396319	ENST00000222792		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000396319	ENST00000435288		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000396319	ENST00000495789		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000396319	ENST00000539389		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000396319	ENST00000546235		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000396319	ENST00000409041		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000396319	ENST00000424025		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000396319	ENST00000439711		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000396319	ENST00000421775		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
5CDS-intron	ENST00000396319	ENST00000410098		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-3CDS	ENST00000494033	ENST00000539406		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-3CDS	ENST00000494033	ENST00000222792		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-3CDS	ENST00000494033	ENST00000435288		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-3CDS	ENST00000494033	ENST00000495789		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-3CDS	ENST00000494033	ENST00000539389		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-3CDS	ENST00000494033	ENST00000546235		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-intron	ENST00000494033	ENST00000409041		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-intron	ENST00000494033	ENST00000424025		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-intron	ENST00000494033	ENST00000439711		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-intron	ENST00000494033	ENST00000421775		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
intron-intron	ENST00000494033	ENST00000410098		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	TAX1BP1	chr7	27827222	+	CHN2	chr7	29394241	+
Frame-shit	ENST00000265070	ENST00000346872		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000394189		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000439167		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000535189		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000377944		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000377945		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000377952		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000377958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000346243		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000350532		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000351680		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000467757		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000439016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000265070	ENST00000583368		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-3CDS	ENST00000512668	ENST00000346872		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000394189		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000439167		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000535189		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000377944		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000377945		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000377952		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000377958		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000346243		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000350532		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000351680		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000467757		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000439016		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
5UTR-intron	ENST00000512668	ENST00000583368		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	GOLPH3	chr5	32173916	-	IKZF3	chr17	37944627	-
intron-intron	ENST00000525445	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-5UTR	ENST00000525445	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000525445	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000525445	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000525445	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000348655	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-5UTR	ENST00000348655	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000348655	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000348655	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000348655	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000397566	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-5UTR	ENST00000397566	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000397566	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000397566	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000397566	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397570	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-5UTR	ENST00000397570	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397570	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397570	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397570	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397574	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-5UTR	ENST00000397574	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397574	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397574	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5CDS-intron	ENST00000397574	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5UTR-intron	ENST00000397562	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5UTR-5UTR	ENST00000397562	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5UTR-intron	ENST00000397562	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5UTR-intron	ENST00000397562	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
5UTR-intron	ENST00000397562	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000330243	ENST00000398958		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-5UTR	ENST00000330243	ENST00000373833		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000330243	ENST00000373832		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000330243	ENST00000373831		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
intron-intron	ENST00000330243	ENST00000429051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	IRF7	chr11	615345	-	RCC1	chr1	28843237	+
In-frame	ENST00000251879	ENST00000394434		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000251879	ENST00000545646		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000251879	ENST00000274562		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000251879	ENST00000510191		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
5CDS-intron	ENST00000251879	ENST00000511505		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000414202	ENST00000394434		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000414202	ENST00000545646		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000414202	ENST00000274562		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000414202	ENST00000510191		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
5CDS-intron	ENST00000414202	ENST00000511505		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000381532	ENST00000394434		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000381532	ENST00000545646		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000381532	ENST00000274562		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000381532	ENST00000510191		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
5CDS-intron	ENST00000381532	ENST00000511505		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000418622	ENST00000394434		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000418622	ENST00000545646		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000418622	ENST00000274562		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000418622	ENST00000510191		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
5CDS-intron	ENST00000418622	ENST00000511505		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000449720	ENST00000394434		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000449720	ENST00000545646		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000449720	ENST00000274562		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
In-frame	ENST00000449720	ENST00000510191		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
5CDS-intron	ENST00000449720	ENST00000511505		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	KIAA1432	chr9	5757451	+	LARS	chr5	145515227	-
Frame-shit	ENST00000601806	ENST00000300976		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000601806	ENST00000595182		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000601806	ENST00000599006		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-3UTR	ENST00000601806	ENST00000596843		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
Frame-shit	ENST00000291281	ENST00000300976		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000291281	ENST00000595182		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000291281	ENST00000599006		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-3UTR	ENST00000291281	ENST00000596843		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
Frame-shit	ENST00000433867	ENST00000300976		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000433867	ENST00000595182		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000433867	ENST00000599006		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-3UTR	ENST00000433867	ENST00000596843		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
Frame-shit	ENST00000600194	ENST00000300976		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000600194	ENST00000595182		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000600194	ENST00000599006		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-3UTR	ENST00000600194	ENST00000596843		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
Frame-shit	ENST00000595515	ENST00000300976		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000595515	ENST00000595182		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-intron	ENST00000595515	ENST00000599006		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
5CDS-3UTR	ENST00000595515	ENST00000596843		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
intron-3CDS	ENST00000593492	ENST00000300976		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
intron-intron	ENST00000593492	ENST00000595182		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
intron-intron	ENST00000593492	ENST00000599006		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
intron-3UTR	ENST00000593492	ENST00000596843		TCGA	RV	ESCA	TCGA-L5-A891-01A	PRKD2	chr19	47204056	-	KLHL26	chr19	18778474	+
In-frame	ENST00000405088	ENST00000285381		TCGA	RV	ESCA	TCGA-V5-A7RB-01A	MICALL2	chr7	1481828	-	CA3	chr8	86354302	+
intron-3CDS	ENST00000471899	ENST00000285381		TCGA	RV	ESCA	TCGA-V5-A7RB-01A	MICALL2	chr7	1481828	-	CA3	chr8	86354302	+
In-frame	ENST00000297508	ENST00000285381		TCGA	RV	ESCA	TCGA-V5-A7RB-01A	MICALL2	chr7	1481828	-	CA3	chr8	86354302	+
In-frame	ENST00000399788	ENST00000305108		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
In-frame	ENST00000399788	ENST00000397265		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000542920		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000433832		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000399788	ENST00000537416		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000305108		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000397265		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000542920		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000433832		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
intron-intron	ENST00000540838	ENST00000537416		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000305108		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000397265		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000542920		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000433832		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000382815	ENST00000537416		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	KDM5A	chr12	430161	-	NINJ2	chr12	675344	-
In-frame	ENST00000375799	ENST00000382199		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375799	ENST00000421047		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375799	ENST00000457616		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375799	ENST00000346192		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
5CDS-intron	ENST00000375799	ENST00000494906		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375793	ENST00000382199		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375793	ENST00000421047		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375793	ENST00000457616		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
In-frame	ENST00000375793	ENST00000346192		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
5CDS-intron	ENST00000375793	ENST00000494906		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
intron-3CDS	ENST00000477849	ENST00000382199		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
intron-3CDS	ENST00000477849	ENST00000421047		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
intron-3CDS	ENST00000477849	ENST00000457616		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
intron-3CDS	ENST00000477849	ENST00000346192		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
intron-intron	ENST00000477849	ENST00000494906		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	PLEKHM2	chr1	16046415	+	IGF2BP2	chr3	185410550	-
5CDS-intron	ENST00000262544	ENST00000484001		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000262544	ENST00000435364		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000262544	ENST00000377681		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000262544	ENST00000489634		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000484001		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000435364		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000377681		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000489634		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000484001		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000435364		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000377681		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000489634		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000484001		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000435364		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000377681		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000489634		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000484001		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000435364		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000377681		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000489634		TCGA	RV	ESCA	TCGA-L5-A4ON-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
intron-3CDS	ENST00000375110	ENST00000298375		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000375110	ENST00000525281		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000375110	ENST00000532248		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000375110	ENST00000334019		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000375110	ENST00000345253		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
In-frame	ENST00000319778	ENST00000298375		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000319778	ENST00000525281		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000319778	ENST00000532248		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000319778	ENST00000334019		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000319778	ENST00000345253		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
In-frame	ENST00000263062	ENST00000298375		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000263062	ENST00000525281		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000263062	ENST00000532248		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000263062	ENST00000334019		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000263062	ENST00000345253		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5UTR-3CDS	ENST00000480402	ENST00000298375		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000480402	ENST00000525281		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000480402	ENST00000532248		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000480402	ENST00000334019		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000480402	ENST00000345253		TCGA	RV	ESCA	TCGA-IG-A8O2-01A	EPC1	chr10	32635691	-	AKR1E2	chr10	4872867	+
intron-3CDS	ENST00000584396	ENST00000476049		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	VEZF1	chr17	56065440	-	KRT222	chr17	38816459	-
intron-3CDS	ENST00000584396	ENST00000394052		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	VEZF1	chr17	56065440	-	KRT222	chr17	38816459	-
In-frame	ENST00000581208	ENST00000476049		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	VEZF1	chr17	56065440	-	KRT222	chr17	38816459	-
In-frame	ENST00000581208	ENST00000394052		TCGA	RV	ESCA	TCGA-JY-A6FB-01A	VEZF1	chr17	56065440	-	KRT222	chr17	38816459	-
In-frame	ENST00000265351	ENST00000375663		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000482996		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000444930		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000435657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000487524		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000457796		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000469542		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000211402		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000462946		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000422694		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000491232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000424974		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000425144		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5CDS-intron	ENST00000265351	ENST00000474299		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-3CDS	ENST00000424378	ENST00000375663		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000482996		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000444930		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000435657		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000487524		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000457796		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000469542		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000211402		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000462946		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000422694		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000491232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000424974		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000425144		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
intron-intron	ENST00000424378	ENST00000474299		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	XPO5	chr6	43492845	-	VARS	chr6	31747591	-
5UTR-3CDS	ENST00000378330	ENST00000389301		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000378330	ENST00000568369		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000567284		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000389302		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000563673		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000534992		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000543736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000301030	ENST00000389301		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000301030	ENST00000568369		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000567284		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000389302		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000563673		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000534992		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000543736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000563291	ENST00000389301		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000563291	ENST00000568369		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000567284		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000389302		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000563673		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000534992		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000543736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000567736	ENST00000389301		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000567736	ENST00000568369		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000567284		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000389302		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000563673		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000534992		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000543736		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000264657	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	STAT3	chr17	40540297	-	NOS2	chr17	26116714	-
5UTR-3CDS	ENST00000585517	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	STAT3	chr17	40540297	-	NOS2	chr17	26116714	-
5UTR-3CDS	ENST00000389272	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	STAT3	chr17	40540297	-	NOS2	chr17	26116714	-
5UTR-3CDS	ENST00000588969	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	STAT3	chr17	40540297	-	NOS2	chr17	26116714	-
5UTR-3CDS	ENST00000404395	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	STAT3	chr17	40540297	-	NOS2	chr17	26116714	-
intron-3CDS	ENST00000590776	ENST00000313735		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	STAT3	chr17	40540297	-	NOS2	chr17	26116714	-
In-frame	ENST00000056233	ENST00000242152		TCGA	RV	ESCA	TCGA-V5-A7RB-01A	NFE2L3	chr7	26192688	+	NPY	chr7	24324860	+
In-frame	ENST00000056233	ENST00000407573		TCGA	RV	ESCA	TCGA-V5-A7RB-01A	NFE2L3	chr7	26192688	+	NPY	chr7	24324860	+
Frame-shit	ENST00000056233	ENST00000405982		TCGA	RV	ESCA	TCGA-V5-A7RB-01A	NFE2L3	chr7	26192688	+	NPY	chr7	24324860	+
intron-3CDS	ENST00000585876	ENST00000586063		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
intron-3CDS	ENST00000585876	ENST00000270310		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
intron-3CDS	ENST00000585876	ENST00000588265		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
5UTR-3CDS	ENST00000588831	ENST00000586063		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
5UTR-3CDS	ENST00000588831	ENST00000270310		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
5UTR-3CDS	ENST00000588831	ENST00000588265		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
5UTR-3CDS	ENST00000246529	ENST00000586063		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
5UTR-3CDS	ENST00000246529	ENST00000270310		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
5UTR-3CDS	ENST00000246529	ENST00000588265		TCGA	RV	ESCA	TCGA-LN-A49L-01A	LRFN3	chr19	36428457	+	FXYD7	chr19	35639597	+
Frame-shit	ENST00000355528	ENST00000392347		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000355528	ENST00000389641		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000355528	ENST00000392346		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000355528	ENST00000327026		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000355528	ENST00000392343		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000397466	ENST00000392347		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000397466	ENST00000389641		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000397466	ENST00000392346		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000397466	ENST00000327026		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000397466	ENST00000392343		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000539345	ENST00000392347		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000539345	ENST00000389641		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000539345	ENST00000392346		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000539345	ENST00000327026		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000539345	ENST00000392343		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000576691	ENST00000392347		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000576691	ENST00000389641		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
intron-intron	ENST00000576691	ENST00000392346		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
intron-intron	ENST00000576691	ENST00000327026		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
intron-intron	ENST00000576691	ENST00000392343		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	TBCD	chr17	80772810	+	CCDC57	chr17	80059742	-
5CDS-3UTR	ENST00000342745	ENST00000555245		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
5CDS-3UTR	ENST00000342745	ENST00000556605		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
5CDS-3UTR	ENST00000342745	ENST00000336643		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
5CDS-intron	ENST00000342745	ENST00000031146		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
5CDS-intron	ENST00000342745	ENST00000557046		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
intron-3UTR	ENST00000553497	ENST00000555245		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
intron-3UTR	ENST00000553497	ENST00000556605		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
intron-3UTR	ENST00000553497	ENST00000336643		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
intron-intron	ENST00000553497	ENST00000031146		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
intron-intron	ENST00000553497	ENST00000557046		TCGA	RV	ESCA	TCGA-JY-A6F8-01A	KIAA0247	chr14	70170309	+	SLC39A9	chr14	69908786	+
In-frame	ENST00000419617	ENST00000520468		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000419617	ENST00000297564		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
In-frame	ENST00000419617	ENST00000520271		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000419617	ENST00000517682		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
In-frame	ENST00000419617	ENST00000524245		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
In-frame	ENST00000419617	ENST00000522940		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
In-frame	ENST00000419617	ENST00000518171		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000419617	ENST00000523016		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000520468		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000297564		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000520271		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000517682		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000524245		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000522940		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
Frame-shit	ENST00000523601	ENST00000518171		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
In-frame	ENST00000523601	ENST00000523016		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000520468		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000297564		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000520271		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000517682		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000524245		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000522940		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000518171		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
intron-3CDS	ENST00000521768	ENST00000523016		TCGA	RV	ESCA	TCGA-L5-A4OT-01A	STK3	chr8	99718695	-	COX6C	chr8	100899846	-
In-frame	ENST00000225724	ENST00000225719		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000225724	ENST00000543464		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
5CDS-3UTR	ENST00000225724	ENST00000584051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000451249	ENST00000225719		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000451249	ENST00000543464		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
5CDS-3UTR	ENST00000451249	ENST00000584051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000467337	ENST00000225719		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000467337	ENST00000543464		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
5CDS-3UTR	ENST00000467337	ENST00000584051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000581721	ENST00000225719		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
In-frame	ENST00000581721	ENST00000543464		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
5CDS-3UTR	ENST00000581721	ENST00000584051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
intron-3CDS	ENST00000579905	ENST00000225719		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
intron-3CDS	ENST00000579905	ENST00000543464		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
intron-3UTR	ENST00000579905	ENST00000584051		TCGA	RV	ESCA	TCGA-2H-A9GJ-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788198	+
Frame-shit	ENST00000357429	ENST00000402746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000357429	ENST00000399654		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000357429	ENST00000406869		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000357429	ENST00000265854		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000357429	ENST00000486340		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397100	ENST00000402746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397100	ENST00000399654		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397100	ENST00000406869		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397100	ENST00000265854		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000397100	ENST00000486340		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397098	ENST00000402746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397098	ENST00000399654		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397098	ENST00000406869		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397098	ENST00000265854		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000397098	ENST00000486340		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000402746		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000399654		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000406869		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000265854		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-intron	ENST00000488073	ENST00000486340		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
intron-5UTR	ENST00000482579	ENST00000488498		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	C1orf85	chr1	156263809	-	C1orf61	chr1	156374393	-
intron-5UTR	ENST00000482579	ENST00000368243		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	C1orf85	chr1	156263809	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000362007	ENST00000488498		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	C1orf85	chr1	156263809	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000362007	ENST00000368243		TCGA	RV	ESCA	TCGA-LN-A7HV-01A	C1orf85	chr1	156263809	-	C1orf61	chr1	156374393	-
5UTR-3CDS	ENST00000256383	ENST00000315266		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
5UTR-3CDS	ENST00000256383	ENST00000478722		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
5UTR-intron	ENST00000256383	ENST00000459628		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
5UTR-intron	ENST00000256383	ENST00000543237		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
5UTR-intron	ENST00000256383	ENST00000305960		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
5UTR-3UTR	ENST00000256383	ENST00000544752		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
intron-3CDS	ENST00000466499	ENST00000315266		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
intron-3CDS	ENST00000466499	ENST00000478722		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
intron-intron	ENST00000466499	ENST00000459628		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
intron-intron	ENST00000466499	ENST00000543237		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
intron-intron	ENST00000466499	ENST00000305960		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
intron-3UTR	ENST00000466499	ENST00000544752		TCGA	RV	ESCA	TCGA-LN-A5U5-01A	EIF2S1	chr14	67827173	+	GPHN	chr14	67576857	+
In-frame	ENST00000309428	ENST00000262325		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
In-frame	ENST00000309428	ENST00000592545		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
In-frame	ENST00000309428	ENST00000538556		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
In-frame	ENST00000309428	ENST00000312678		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
In-frame	ENST00000309428	ENST00000589344		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
In-frame	ENST00000309428	ENST00000537622		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5CDS-3UTR	ENST00000309428	ENST00000545922		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
Frame-shit	ENST00000585894	ENST00000262325		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
Frame-shit	ENST00000585894	ENST00000592545		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
Frame-shit	ENST00000585894	ENST00000538556		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
Frame-shit	ENST00000585894	ENST00000312678		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
Frame-shit	ENST00000585894	ENST00000589344		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
Frame-shit	ENST00000585894	ENST00000537622		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5CDS-3UTR	ENST00000585894	ENST00000545922		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3CDS	ENST00000543197	ENST00000262325		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3CDS	ENST00000543197	ENST00000592545		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3CDS	ENST00000543197	ENST00000538556		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3CDS	ENST00000543197	ENST00000312678		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3CDS	ENST00000543197	ENST00000589344		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3CDS	ENST00000543197	ENST00000537622		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
5UTR-3UTR	ENST00000543197	ENST00000545922		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	FAM134C	chr17	40738783	-	AP2B1	chr17	34001195	+
In-frame	ENST00000321990	ENST00000346872		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000394189		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000439167		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000535189		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000377944		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000377945		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000377952		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
In-frame	ENST00000321990	ENST00000377958		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000321990	ENST00000346243		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000321990	ENST00000350532		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000321990	ENST00000351680		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000321990	ENST00000467757		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000321990	ENST00000439016		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
Frame-shit	ENST00000321990	ENST00000583368		TCGA	RV	ESCA	TCGA-L5-A4OU-01A	ATAD5	chr17	29196664	+	IKZF3	chr17	37922746	-
5UTR-3CDS	ENST00000358026	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000358026	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000358026	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000358026	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000358026	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000358026	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-intron	ENST00000358026	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000344626	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000344626	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000344626	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000344626	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000344626	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000344626	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-intron	ENST00000344626	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000429416	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000429416	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000429416	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000429416	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000429416	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000429416	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-intron	ENST00000429416	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000541122	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000541122	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000541122	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000541122	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000541122	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000541122	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-intron	ENST00000541122	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000589677	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000589677	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000589677	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000589677	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000589677	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000589677	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-intron	ENST00000589677	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000444061	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000444061	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000444061	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000444061	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000444061	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000444061	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
5UTR-intron	ENST00000444061	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000590574	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000590574	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000590574	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000590574	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000590574	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000590574	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-intron	ENST00000590574	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000413806	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000413806	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000413806	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000413806	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000413806	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000413806	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-intron	ENST00000413806	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000450717	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000450717	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000450717	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000450717	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000450717	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000450717	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-intron	ENST00000450717	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000538456	ENST00000585892		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000538456	ENST00000314646		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000538456	ENST00000359692		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000538456	ENST00000389253		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000538456	ENST00000355667		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-3CDS	ENST00000538456	ENST00000408974		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
intron-intron	ENST00000538456	ENST00000591819		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	SMARCA4	chr19	11071850	+	DNM2	chr19	10916592	+
In-frame	ENST00000353139	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000353139	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000353139	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
In-frame	ENST00000360679	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000360679	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000360679	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
Frame-shit	ENST00000394406	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000394406	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000394406	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
Frame-shit	ENST00000335166	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000335166	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
5CDS-5UTR	ENST00000335166	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000416895	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000416895	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000416895	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000361253	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000361253	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000361253	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000588142	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000588142	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000588142	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000589665	ENST00000318008		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000589665	ENST00000433206		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000589665	ENST00000435347		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536201	-	LASP1	chr17	37034339	+
Frame-shit	ENST00000262879	ENST00000371741		TCGA	RV	ESCA	TCGA-VR-A8EQ-01A	RALGAPB	chr20	37128276	+	KCNB1	chr20	47991529	-
Frame-shit	ENST00000397042	ENST00000371741		TCGA	RV	ESCA	TCGA-VR-A8EQ-01A	RALGAPB	chr20	37128276	+	KCNB1	chr20	47991529	-
Frame-shit	ENST00000397038	ENST00000371741		TCGA	RV	ESCA	TCGA-VR-A8EQ-01A	RALGAPB	chr20	37128276	+	KCNB1	chr20	47991529	-
Frame-shit	ENST00000537204	ENST00000371741		TCGA	RV	ESCA	TCGA-VR-A8EQ-01A	RALGAPB	chr20	37128276	+	KCNB1	chr20	47991529	-
Frame-shit	ENST00000397040	ENST00000371741		TCGA	RV	ESCA	TCGA-VR-A8EQ-01A	RALGAPB	chr20	37128276	+	KCNB1	chr20	47991529	-
intron-3CDS	ENST00000490114	ENST00000371741		TCGA	RV	ESCA	TCGA-VR-A8EQ-01A	RALGAPB	chr20	37128276	+	KCNB1	chr20	47991529	-
Frame-shit	ENST00000284719	ENST00000342016		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
Frame-shit	ENST00000284719	ENST00000362053		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000344357	ENST00000342016		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000344357	ENST00000362053		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
Frame-shit	ENST00000428402	ENST00000342016		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
Frame-shit	ENST00000428402	ENST00000362053		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
In-frame	ENST00000409546	ENST00000342016		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
In-frame	ENST00000409546	ENST00000362053		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000392560	ENST00000342016		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000392560	ENST00000362053		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	OLA1	chr2	175087761	-	CIR1	chr2	175216453	-
In-frame	ENST00000012443	ENST00000352203		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
In-frame	ENST00000012443	ENST00000601498		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
In-frame	ENST00000012443	ENST00000599990		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000012443	ENST00000593442		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000012443	ENST00000263270		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000012443	ENST00000597020		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000012443	ENST00000601649		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
In-frame	ENST00000391919	ENST00000352203		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
In-frame	ENST00000391919	ENST00000601498		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
In-frame	ENST00000391919	ENST00000599990		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000391919	ENST00000593442		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000391919	ENST00000263270		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000391919	ENST00000597020		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000391919	ENST00000601649		TCGA	RV	ESCA	TCGA-L5-A43J-01A	PPP5C	chr19	46857246	+	AP2S1	chr19	47349399	-
In-frame	ENST00000275820	ENST00000432459		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
In-frame	ENST00000275820	ENST00000317955		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
In-frame	ENST00000275820	ENST00000405335		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
In-frame	ENST00000275820	ENST00000311822		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
In-frame	ENST00000275820	ENST00000392743		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
5CDS-intron	ENST00000275820	ENST00000392741		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
5CDS-intron	ENST00000275820	ENST00000392740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
5CDS-intron	ENST00000275820	ENST00000343665		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
5CDS-intron	ENST00000275820	ENST00000480011		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-3CDS	ENST00000460332	ENST00000432459		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-3CDS	ENST00000460332	ENST00000317955		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-3CDS	ENST00000460332	ENST00000405335		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-3CDS	ENST00000460332	ENST00000311822		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-3CDS	ENST00000460332	ENST00000392743		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-intron	ENST00000460332	ENST00000392741		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-intron	ENST00000460332	ENST00000392740		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-intron	ENST00000460332	ENST00000343665		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
3UTR-intron	ENST00000460332	ENST00000480011		TCGA	RV	ESCA	TCGA-L5-A4OS-01A	NOM1	chr7	156746992	+	RNF32	chr7	156468390	+
In-frame	ENST00000524189	ENST00000252032		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
5CDS-3UTR	ENST00000524189	ENST00000453730		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
5CDS-intron	ENST00000524189	ENST00000498079		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
In-frame	ENST00000521515	ENST00000252032		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
5CDS-3UTR	ENST00000521515	ENST00000453730		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
5CDS-intron	ENST00000521515	ENST00000498079		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
intron-3CDS	ENST00000404075	ENST00000252032		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
intron-3UTR	ENST00000404075	ENST00000453730		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
intron-intron	ENST00000404075	ENST00000498079		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	KIF13B	chr8	29013243	-	C20orf194	chr20	3262412	-
In-frame	ENST00000255882	ENST00000215730		TCGA	RV	ESCA	TCGA-LN-A4A2-01A	PI4KA	chr22	21212858	-	SNAP29	chr22	21224625	+
5UTR-3CDS	ENST00000572273	ENST00000215730		TCGA	RV	ESCA	TCGA-LN-A4A2-01A	PI4KA	chr22	21212858	-	SNAP29	chr22	21224625	+
intron-3CDS	ENST00000414196	ENST00000215730		TCGA	RV	ESCA	TCGA-LN-A4A2-01A	PI4KA	chr22	21212858	-	SNAP29	chr22	21224625	+
intron-3CDS	ENST00000466162	ENST00000215730		TCGA	RV	ESCA	TCGA-LN-A4A2-01A	PI4KA	chr22	21212858	-	SNAP29	chr22	21224625	+
5CDS-intron	ENST00000248594	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000248594	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000248594	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000248594	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000415482	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-5UTR	ENST00000415482	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-3UTR	ENST00000415482	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000415482	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000435495	ENST00000006777		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-5UTR	ENST00000435495	ENST00000318622		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-3UTR	ENST00000435495	ENST00000468304		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
intron-intron	ENST00000435495	ENST00000428119		TCGA	RV	ESCA	TCGA-LN-A49L-01A	PTPN12	chr7	77166962	+	RHBDD2	chr7	75510683	+
Frame-shit	ENST00000355078	ENST00000239938		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CTNNA1	chr5	138163407	+	EGR1	chr5	137802446	+
Frame-shit	ENST00000302763	ENST00000239938		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CTNNA1	chr5	138163407	+	EGR1	chr5	137802446	+
Frame-shit	ENST00000518825	ENST00000239938		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CTNNA1	chr5	138163407	+	EGR1	chr5	137802446	+
intron-3CDS	ENST00000520400	ENST00000239938		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CTNNA1	chr5	138163407	+	EGR1	chr5	137802446	+
intron-3CDS	ENST00000540387	ENST00000239938		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	CTNNA1	chr5	138163407	+	EGR1	chr5	137802446	+
In-frame	ENST00000291442	ENST00000252597		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NR2F6	chr19	17355752	-	USHBP1	chr19	17362826	-
In-frame	ENST00000291442	ENST00000431146		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NR2F6	chr19	17355752	-	USHBP1	chr19	17362826	-
5CDS-intron	ENST00000291442	ENST00000598570		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	NR2F6	chr19	17355752	-	USHBP1	chr19	17362826	-
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-3CDS	ENST00000405201	ENST00000376788		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-3CDS	ENST00000405201	ENST00000546215		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404621	ENST00000376788		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404621	ENST00000546215		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404121	ENST00000376788		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000404121	ENST00000546215		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000356219	ENST00000376788		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000356219	ENST00000546215		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000397355	ENST00000376788		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000397355	ENST00000546215		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000429285	ENST00000376788		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-3CDS	ENST00000429285	ENST00000546215		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
5UTR-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	ESCA	TCGA-2H-A9GN-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125271049	-
In-frame	ENST00000227495	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000227495	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000227495	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000444328	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000444328	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000444328	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000356132	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000356132	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000356132	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000530591	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000530591	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000530591	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000534083	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000534083	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000534083	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000392669	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000392669	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000392669	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
intron-3CDS	ENST00000526756	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
intron-3CDS	ENST00000526756	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
intron-3CDS	ENST00000526756	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000526727	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000526727	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000526727	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000449406	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000449406	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000449406	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000532243	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000532243	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000532243	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000534457	ENST00000434758		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000534457	ENST00000526781		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
In-frame	ENST00000534457	ENST00000534360		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	ST3GAL4	chr11	126279306	+	C11orf70	chr11	101929611	+
Frame-shit	ENST00000243578	ENST00000233596		TCGA	RV	ESCA	TCGA-L5-A891-01A	B9D2	chr19	41869337	-	REEP6	chr19	1495293	+
5UTR-3CDS	ENST00000601597	ENST00000233596		TCGA	RV	ESCA	TCGA-L5-A891-01A	B9D2	chr19	41869337	-	REEP6	chr19	1495293	+
5UTR-3CDS	ENST00000425241	ENST00000317096		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
5UTR-3CDS	ENST00000425241	ENST00000311101		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
5UTR-3CDS	ENST00000425241	ENST00000435888		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
5UTR-3CDS	ENST00000323373	ENST00000317096		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
5UTR-3CDS	ENST00000323373	ENST00000311101		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
5UTR-3CDS	ENST00000323373	ENST00000435888		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000393102	ENST00000317096		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000393102	ENST00000311101		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000393102	ENST00000435888		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000406272	ENST00000317096		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000406272	ENST00000311101		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000406272	ENST00000435888		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000478572	ENST00000317096		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000478572	ENST00000311101		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000478572	ENST00000435888		TCGA	RV	ESCA	TCGA-R6-A6Y2-01B	NR2C2	chr3	14989413	+	PARL	chr3	183585848	-
intron-3CDS	ENST00000304363	ENST00000397086		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000320225		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000566458		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000566397		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000565678		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000561718		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000568631		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000569598		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000304363	ENST00000301730		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-intron	ENST00000304363	ENST00000567147		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000397086		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000320225		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000566458		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000566397		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000565678		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000561718		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000568631		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000569598		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-3CDS	ENST00000401547	ENST00000301730		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
intron-intron	ENST00000401547	ENST00000567147		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000397086		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000320225		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000566458		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000566397		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000565678		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000561718		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000568631		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000569598		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000405515	ENST00000301730		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-intron	ENST00000405515	ENST00000567147		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000397086		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000320225		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000566458		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000566397		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000565678		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000561718		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000568631		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000569598		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402789	ENST00000301730		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-intron	ENST00000402789	ENST00000567147		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000397086		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000320225		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000566458		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000566397		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000565678		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000561718		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000568631		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000569598		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-3CDS	ENST00000402185	ENST00000301730		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
5UTR-intron	ENST00000402185	ENST00000567147		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	SUV420H1	chr11	67980944	-	RNPS1	chr16	2305727	-
Frame-shit	ENST00000373095	ENST00000268130		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
Frame-shit	ENST00000373095	ENST00000560294		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
5CDS-intron	ENST00000373095	ENST00000558000		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
5CDS-intron	ENST00000373095	ENST00000444934		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-3CDS	ENST00000373084	ENST00000268130		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-3CDS	ENST00000373084	ENST00000560294		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-intron	ENST00000373084	ENST00000558000		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-intron	ENST00000373084	ENST00000444934		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-3CDS	ENST00000300434	ENST00000268130		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-3CDS	ENST00000300434	ENST00000560294		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-intron	ENST00000300434	ENST00000558000		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-intron	ENST00000300434	ENST00000444934		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM102A	chr9	130715854	-	WDR93	chr15	90286523	+
intron-3CDS	ENST00000491671	ENST00000216211		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
intron-3CDS	ENST00000491671	ENST00000396082		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
5UTR-3CDS	ENST00000216214	ENST00000216211		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
5UTR-3CDS	ENST00000216214	ENST00000396082		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
5UTR-3CDS	ENST00000441876	ENST00000216211		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
5UTR-3CDS	ENST00000441876	ENST00000396082		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
5UTR-3CDS	ENST00000405673	ENST00000216211		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
5UTR-3CDS	ENST00000405673	ENST00000396082		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
intron-3CDS	ENST00000405548	ENST00000216211		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
intron-3CDS	ENST00000405548	ENST00000396082		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	FAM118A	chr22	45706064	+	UPK3A	chr22	45689062	+
In-frame	ENST00000451813	ENST00000253363		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000451813	ENST00000361162		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000451813	ENST00000528062		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000451813	ENST00000407261		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
5CDS-intron	ENST00000451813	ENST00000397370		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
5CDS-intron	ENST00000451813	ENST00000463098		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000252015	ENST00000253363		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000252015	ENST00000361162		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000252015	ENST00000528062		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000252015	ENST00000407261		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
5CDS-intron	ENST00000252015	ENST00000397370		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
5CDS-intron	ENST00000252015	ENST00000463098		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000539834	ENST00000253363		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000539834	ENST00000361162		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000539834	ENST00000528062		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000539834	ENST00000407261		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-intron	ENST00000539834	ENST00000397370		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-intron	ENST00000539834	ENST00000463098		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000432634	ENST00000253363		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000432634	ENST00000361162		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000432634	ENST00000528062		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-3CDS	ENST00000432634	ENST00000407261		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-intron	ENST00000432634	ENST00000397370		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
intron-intron	ENST00000432634	ENST00000463098		TCGA	RV	ESCA	TCGA-L5-A4OQ-01A	TRPC4AP	chr20	33657099	-	RBM39	chr20	34304727	-
In-frame	ENST00000519374	ENST00000393784		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000519374	ENST00000519860		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000519374	ENST00000523291		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-intron	ENST00000519374	ENST00000326654		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
In-frame	ENST00000519911	ENST00000393784		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000519911	ENST00000519860		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000519911	ENST00000523291		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-intron	ENST00000519911	ENST00000326654		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
In-frame	ENST00000265093	ENST00000393784		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000265093	ENST00000519860		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000265093	ENST00000523291		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-intron	ENST00000265093	ENST00000326654		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
In-frame	ENST00000517669	ENST00000393784		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000517669	ENST00000519860		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-3UTR	ENST00000517669	ENST00000523291		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
5CDS-intron	ENST00000517669	ENST00000326654		TCGA	RV	ESCA	TCGA-L5-A8NE-01A	ATP6V0E1	chr5	172410967	+	ERGIC1	chr5	172315702	+
In-frame	ENST00000375110	ENST00000383472		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000400091		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000262227		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000419673		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000531294		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000418986		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000314319		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000375110	ENST00000532996		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000383472		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000400091		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000262227		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000419673		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000531294		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000418986		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000314319		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000319778	ENST00000532996		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000383472		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000400091		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000262227		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000419673		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000531294		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000418986		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000314319		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
In-frame	ENST00000263062	ENST00000532996		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000383472		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000400091		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000262227		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000419673		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000531294		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000418986		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000314319		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
intron-3CDS	ENST00000480402	ENST00000532996		TCGA	RV	ESCA	TCGA-L5-A4OR-01A	EPC1	chr10	32580091	-	ARHGAP28	chr18	6873408	+
Frame-shit	ENST00000393043	ENST00000300896		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000393043	ENST00000592339		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000393043	ENST00000393003		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000393043	ENST00000586881		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
Frame-shit	ENST00000269122	ENST00000300896		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000269122	ENST00000592339		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000269122	ENST00000393003		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000269122	ENST00000586881		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
Frame-shit	ENST00000579456	ENST00000300896		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000579456	ENST00000592339		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000579456	ENST00000393003		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000579456	ENST00000586881		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
intron-3CDS	ENST00000579815	ENST00000300896		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
intron-intron	ENST00000579815	ENST00000592339		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
intron-intron	ENST00000579815	ENST00000393003		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
intron-intron	ENST00000579815	ENST00000586881		TCGA	RV	ESCA	TCGA-V5-A7RE-01A	CLTC	chr17	57697534	+	USP32	chr17	58422969	-
Frame-shit	ENST00000343411	ENST00000341690		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
Frame-shit	ENST00000343411	ENST00000567759		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
Frame-shit	ENST00000343411	ENST00000378541		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
Frame-shit	ENST00000343411	ENST00000541676		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
Frame-shit	ENST00000343411	ENST00000566732		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
Frame-shit	ENST00000343411	ENST00000570117		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5CDS-intron	ENST00000343411	ENST00000565544		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-3CDS	ENST00000569770	ENST00000341690		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-3CDS	ENST00000569770	ENST00000567759		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-3CDS	ENST00000569770	ENST00000378541		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-3CDS	ENST00000569770	ENST00000541676		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-3CDS	ENST00000569770	ENST00000566732		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-3CDS	ENST00000569770	ENST00000570117		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
5UTR-intron	ENST00000569770	ENST00000565544		TCGA	RV	ESCA	TCGA-JY-A6FA-01A	MBTPS1	chr16	84120963	-	TAF1C	chr16	84213950	-
intron-intron	ENST00000264818	ENST00000586218		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000593256		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000447337		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000354882		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000586590		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000586956		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000589555		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000587948		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000264818	ENST00000588560		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-intron	ENST00000524462	ENST00000586218		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000593256		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000447337		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000354882		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000586590		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000586956		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000589555		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000587948		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000524462	ENST00000588560		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-intron	ENST00000525621	ENST00000586218		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000593256		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000447337		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000354882		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000586590		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000586956		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000589555		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000587948		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000525621	ENST00000588560		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-intron	ENST00000529370	ENST00000586218		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000593256		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000447337		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000354882		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000586590		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000586956		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000589555		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000587948		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
5UTR-5UTR	ENST00000529370	ENST00000588560		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-intron	ENST00000529422	ENST00000586218		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000593256		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000447337		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000354882		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000586590		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000586956		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000589555		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000587948		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000529422	ENST00000588560		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	TYK2	chr19	10490291	-	TMEM205	chr19	11456304	-
Frame-shit	ENST00000263847	ENST00000257248		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	OSBP	chr11	59361077	-	GIF	chr11	59597018	-
In-frame	ENST00000263847	ENST00000541311		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	OSBP	chr11	59361077	-	GIF	chr11	59597018	-
In-frame	ENST00000262144	ENST00000319410		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	WDR59	chr16	74982417	-	KARS	chr16	75670445	-
In-frame	ENST00000262144	ENST00000302445		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	WDR59	chr16	74982417	-	KARS	chr16	75670445	-
5CDS-intron	ENST00000262144	ENST00000568378		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	WDR59	chr16	74982417	-	KARS	chr16	75670445	-
intron-3CDS	ENST00000562331	ENST00000319410		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	WDR59	chr16	74982417	-	KARS	chr16	75670445	-
intron-3CDS	ENST00000562331	ENST00000302445		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	WDR59	chr16	74982417	-	KARS	chr16	75670445	-
intron-intron	ENST00000562331	ENST00000568378		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	WDR59	chr16	74982417	-	KARS	chr16	75670445	-
In-frame	ENST00000540367	ENST00000305783		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000540367	ENST00000442346		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
Frame-shit	ENST00000376618	ENST00000305783		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000376618	ENST00000442346		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
Frame-shit	ENST00000265641	ENST00000305783		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000265641	ENST00000442346		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
In-frame	ENST00000539743	ENST00000305783		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
5CDS-3UTR	ENST00000539743	ENST00000442346		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
intron-3CDS	ENST00000537756	ENST00000305783		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
intron-3UTR	ENST00000537756	ENST00000442346		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
intron-3CDS	ENST00000538994	ENST00000305783		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
intron-3UTR	ENST00000538994	ENST00000442346		TCGA	RV	ESCA	TCGA-L5-A8NH-01A	CPT1A	chr11	68527037	-	RNFT1	chr17	58031507	-
In-frame	ENST00000262764	ENST00000335221		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000262764	ENST00000321892		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000262764	ENST00000306378		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000262764	ENST00000424123		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
5CDS-intron	ENST00000262764	ENST00000577770		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000329897	ENST00000335221		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000329897	ENST00000321892		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000329897	ENST00000306378		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000329897	ENST00000424123		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
5CDS-intron	ENST00000329897	ENST00000577770		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
3UTR-3CDS	ENST00000588281	ENST00000335221		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
3UTR-3CDS	ENST00000588281	ENST00000321892		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
3UTR-3CDS	ENST00000588281	ENST00000306378		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
3UTR-3CDS	ENST00000588281	ENST00000424123		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
3UTR-intron	ENST00000588281	ENST00000577770		TCGA	RV	ESCA	TCGA-L5-A4OW-01A	PGS1	chr17	76400170	+	BPTF	chr17	65916131	+
In-frame	ENST00000379370	ENST00000301011		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	AGRN	chr1	980903	+	ZC3H18	chr16	88664586	+
In-frame	ENST00000379370	ENST00000452588		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	AGRN	chr1	980903	+	ZC3H18	chr16	88664586	+
intron-3CDS	ENST00000477585	ENST00000301011		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	AGRN	chr1	980903	+	ZC3H18	chr16	88664586	+
intron-3CDS	ENST00000477585	ENST00000452588		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	AGRN	chr1	980903	+	ZC3H18	chr16	88664586	+
5UTR-3CDS	ENST00000346329	ENST00000525144		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000346329	ENST00000529097		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000346329	ENST00000525704		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000346329	ENST00000533026		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000346329	ENST00000416561		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000301843	ENST00000525144		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000301843	ENST00000529097		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000301843	ENST00000525704		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000301843	ENST00000533026		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000301843	ENST00000416561		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
3UTR-3CDS	ENST00000527622	ENST00000525144		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
3UTR-3CDS	ENST00000527622	ENST00000529097		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
3UTR-3CDS	ENST00000527622	ENST00000525704		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
3UTR-intron	ENST00000527622	ENST00000533026		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
3UTR-intron	ENST00000527622	ENST00000416561		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000376561	ENST00000525144		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000376561	ENST00000529097		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-3CDS	ENST00000376561	ENST00000525704		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000376561	ENST00000533026		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
5UTR-intron	ENST00000376561	ENST00000416561		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000538675	ENST00000525144		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000538675	ENST00000529097		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
intron-3CDS	ENST00000538675	ENST00000525704		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
intron-intron	ENST00000538675	ENST00000533026		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
intron-intron	ENST00000538675	ENST00000416561		TCGA	RV	ESCA	TCGA-IG-A3I8-01A	CTTN	chr11	70244720	+	KIRREL3	chr11	126343361	-
Frame-shit	ENST00000233146	ENST00000405271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000233146	ENST00000263735		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000543555	ENST00000405271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000543555	ENST00000263735		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000406134	ENST00000405271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000406134	ENST00000263735		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
intron-3CDS	ENST00000461394	ENST00000405271		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
intron-3CDS	ENST00000461394	ENST00000263735		TCGA	RV	ESCA	TCGA-L5-A8NI-01A	MSH2	chr2	47630541	+	EPCAM	chr2	47612305	+
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404621	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404621	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404121	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404121	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000356219	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000356219	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000397355	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000397355	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000429285	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000429285	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A43M-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000424085	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000424085	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000257075	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000257075	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373747	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373747	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000426105	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000426105	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000440538	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000440538	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373741	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373741	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000423018	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000423018	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373742	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373742	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
intron-intron	ENST00000490546	ENST00000469100		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
intron-intron	ENST00000490546	ENST00000373477		TCGA	RV	ESCA	TCGA-JY-A6FH-01A	PUM1	chr1	31532051	-	YARS	chr1	33276658	-
5UTR-3CDS	ENST00000313367	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000313367	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000313367	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000313367	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000313367	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000313367	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-intron	ENST00000313367	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000431825	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000431825	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000431825	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000431825	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000431825	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000431825	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-intron	ENST00000431825	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000352860	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000352860	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000352860	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000352860	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000352860	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000352860	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-intron	ENST00000352860	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000353930	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000353930	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000353930	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000353930	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000353930	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-3CDS	ENST00000353930	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
5UTR-intron	ENST00000353930	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396431	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396431	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396431	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396431	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396431	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396431	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-intron	ENST00000396431	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000409069	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000409069	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000409069	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000409069	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000409069	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000409069	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-intron	ENST00000409069	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396429	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396429	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396429	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396429	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396429	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000396429	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-intron	ENST00000396429	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000487020	ENST00000355303		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000487020	ENST00000398543		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000487020	ENST00000538023		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000487020	ENST00000316296		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000487020	ENST00000530676		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-3CDS	ENST00000487020	ENST00000531349		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
intron-intron	ENST00000487020	ENST00000525494		TCGA	RV	ESCA	TCGA-VR-A8EU-01A	OSBPL3	chr7	25019505	-	ANO1	chr11	69978025	+
Frame-shit	ENST00000220764	ENST00000522695		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
Frame-shit	ENST00000220764	ENST00000524300		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
Frame-shit	ENST00000220764	ENST00000523558		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
Frame-shit	ENST00000220764	ENST00000521210		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
In-frame	ENST00000220764	ENST00000355780		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
In-frame	ENST00000220764	ENST00000519961		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
Frame-shit	ENST00000220764	ENST00000521727		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
Frame-shit	ENST00000220764	ENST00000521451		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
Frame-shit	ENST00000220764	ENST00000522509		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
In-frame	ENST00000220764	ENST00000517542		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5CDS-intron	ENST00000220764	ENST00000524104		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5CDS-intron	ENST00000220764	ENST00000522962		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5CDS-intron	ENST00000220764	ENST00000521419		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000522695		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000524300		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000523558		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000521210		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000355780		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000519961		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000521727		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000521451		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000522509		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-3CDS	ENST00000519007	ENST00000517542		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-intron	ENST00000519007	ENST00000524104		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-intron	ENST00000519007	ENST00000522962		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
3UTR-intron	ENST00000519007	ENST00000521419		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000522695		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000524300		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000523558		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000521210		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000355780		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000519961		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000521727		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000521451		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000522509		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000522161	ENST00000517542		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-intron	ENST00000522161	ENST00000524104		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-intron	ENST00000522161	ENST00000522962		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-intron	ENST00000522161	ENST00000521419		TCGA	RV	ESCA	TCGA-2H-A9GG-01A	DECR1	chr8	91013789	+	STAU2	chr8	74464554	-
5UTR-3CDS	ENST00000336308	ENST00000346872		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000394189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000439167		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000535189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000377944		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000377945		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000377952		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000377958		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000346243		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000350532		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000351680		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000467757		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000336308	ENST00000439016		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-intron	ENST00000336308	ENST00000583368		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000346872		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000394189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000439167		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000535189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000377944		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000377945		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000377952		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000377958		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000346243		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000350532		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000351680		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000467757		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-3CDS	ENST00000578232	ENST00000439016		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
3UTR-intron	ENST00000578232	ENST00000583368		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000346872		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000394189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000439167		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000535189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000377944		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000377945		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000377952		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000377958		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000346243		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000350532		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000351680		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000467757		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000544210	ENST00000439016		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-intron	ENST00000544210	ENST00000583368		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000346872		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000394189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000439167		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000535189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000377944		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000377945		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000377952		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000377958		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000346243		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000350532		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000351680		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000467757		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000394250	ENST00000439016		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-intron	ENST00000394250	ENST00000583368		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000346872		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000394189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000439167		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000535189		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000377944		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000377945		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000377952		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000377958		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000346243		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000350532		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000351680		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000467757		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-3CDS	ENST00000580611	ENST00000439016		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
5UTR-intron	ENST00000580611	ENST00000583368		TCGA	RV	ESCA	TCGA-2H-A9GF-01A	STARD3	chr17	37793484	+	IKZF3	chr17	37988404	-
In-frame	ENST00000361813	ENST00000295688		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
In-frame	ENST00000361813	ENST00000368259		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
In-frame	ENST00000361813	ENST00000368261		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
In-frame	ENST00000361813	ENST00000472765		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
5CDS-intron	ENST00000361813	ENST00000368256		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368267	ENST00000295688		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368267	ENST00000368259		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368267	ENST00000368261		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368267	ENST00000472765		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-intron	ENST00000368267	ENST00000368256		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000489907	ENST00000295688		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000489907	ENST00000368259		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000489907	ENST00000368261		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000489907	ENST00000472765		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-intron	ENST00000489907	ENST00000368256		TCGA	RV	ESCA	TCGA-Z6-AAPN-01A	SMG5	chr1	156228796	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000355117	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000355117	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000355117	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000355117	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000355117	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-5UTR	ENST00000355117	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540841	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540841	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540841	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540841	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540841	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-5UTR	ENST00000540841	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540178	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540178	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540178	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540178	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000540178	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-5UTR	ENST00000540178	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000360409	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000360409	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
Frame-shit	ENST00000360409	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000360409	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000360409	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
5CDS-5UTR	ENST00000360409	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000417189	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000417189	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000417189	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000417189	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-3CDS	ENST00000417189	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
intron-5UTR	ENST00000417189	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357118	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357118	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
Frame-shit	ENST00000357118	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357118	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357118	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
5CDS-5UTR	ENST00000357118	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357785	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357785	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
Frame-shit	ENST00000357785	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357785	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000357785	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
5CDS-5UTR	ENST00000357785	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000272849	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000272849	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
Frame-shit	ENST00000272849	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000272849	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000272849	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
5CDS-5UTR	ENST00000272849	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000412873	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000412873	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
Frame-shit	ENST00000412873	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000412873	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000412873	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
5CDS-5UTR	ENST00000412873	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
3UTR-3CDS	ENST00000485684	ENST00000309446		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
3UTR-3CDS	ENST00000485684	ENST00000421199		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
3UTR-3CDS	ENST00000485684	ENST00000423015		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
3UTR-3CDS	ENST00000485684	ENST00000458272		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
3UTR-3CDS	ENST00000485684	ENST00000412414		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
3UTR-5UTR	ENST00000485684	ENST00000467833		TCGA	RV	ESCA	TCGA-L5-A8NT-01A	NRP2	chr2	206631527	+	KLF7	chr2	207953305	-
In-frame	ENST00000259526	ENST00000259486		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	NOV	chr8	120431585	+	ENPP2	chr8	120606100	-
In-frame	ENST00000259526	ENST00000427067		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	NOV	chr8	120431585	+	ENPP2	chr8	120606100	-
5CDS-intron	ENST00000259526	ENST00000522167		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	NOV	chr8	120431585	+	ENPP2	chr8	120606100	-
5CDS-intron	ENST00000259526	ENST00000522826		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	NOV	chr8	120431585	+	ENPP2	chr8	120606100	-
5CDS-intron	ENST00000259526	ENST00000075322		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	NOV	chr8	120431585	+	ENPP2	chr8	120606100	-
5CDS-intron	ENST00000259526	ENST00000518109		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	NOV	chr8	120431585	+	ENPP2	chr8	120606100	-
Frame-shit	ENST00000263620	ENST00000321030		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
Frame-shit	ENST00000263620	ENST00000419967		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
Frame-shit	ENST00000263620	ENST00000391755		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
5CDS-intron	ENST00000263620	ENST00000498612		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
intron-3CDS	ENST00000592216	ENST00000321030		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
intron-3CDS	ENST00000592216	ENST00000419967		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
intron-3CDS	ENST00000592216	ENST00000391755		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
intron-intron	ENST00000592216	ENST00000498612		TCGA	RV	ESCA	TCGA-L5-A891-01A	ARID3A	chr19	932742	+	PRPF31	chr19	54634738	+
5CDS-5UTR	ENST00000253363	ENST00000248984		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000253363	ENST00000543051		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000253363	ENST00000486651		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000361162	ENST00000248984		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000361162	ENST00000543051		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000361162	ENST00000486651		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000528062	ENST00000248984		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000528062	ENST00000543051		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000528062	ENST00000486651		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5UTR-5UTR	ENST00000407261	ENST00000248984		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5UTR-5UTR	ENST00000407261	ENST00000543051		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5UTR-5UTR	ENST00000407261	ENST00000486651		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000397370	ENST00000248984		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000397370	ENST00000543051		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
5CDS-5UTR	ENST00000397370	ENST00000486651		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
intron-5UTR	ENST00000463098	ENST00000248984		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
intron-5UTR	ENST00000463098	ENST00000543051		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
intron-5UTR	ENST00000463098	ENST00000486651		TCGA	RV	ESCA	TCGA-L5-A8NF-01A	RBM39	chr20	34326890	-	C22orf24	chr22	32334101	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	ESCA	TCGA-LN-A9FO-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737458	+
In-frame	ENST00000258198	ENST00000359087		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000258198	ENST00000290810		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000258198	ENST00000379463		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000258198	ENST00000394074		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
5CDS-intron	ENST00000258198	ENST00000564040		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000379482	ENST00000359087		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000379482	ENST00000290810		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000379482	ENST00000379463		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000379482	ENST00000394074		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
5CDS-intron	ENST00000379482	ENST00000564040		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000443351	ENST00000359087		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000443351	ENST00000290810		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000443351	ENST00000379463		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
In-frame	ENST00000443351	ENST00000394074		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
5CDS-intron	ENST00000443351	ENST00000564040		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000570201	ENST00000359087		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000570201	ENST00000290810		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000570201	ENST00000379463		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000570201	ENST00000394074		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-intron	ENST00000570201	ENST00000564040		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000440564	ENST00000359087		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000440564	ENST00000290810		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000440564	ENST00000379463		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000440564	ENST00000394074		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-intron	ENST00000440564	ENST00000564040		TCGA	RV	ESCA	TCGA-VR-A8Q7-01A	DYNC1LI2	chr16	66783100	-	NAE1	chr16	66839929	-
intron-3CDS	ENST00000477333	ENST00000326291		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	KLF5	chr13	73638021	+	PIBF1	chr13	73590007	+
intron-3UTR	ENST00000477333	ENST00000489922		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	KLF5	chr13	73638021	+	PIBF1	chr13	73590007	+
Frame-shit	ENST00000539231	ENST00000326291		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	KLF5	chr13	73638021	+	PIBF1	chr13	73590007	+
5CDS-3UTR	ENST00000539231	ENST00000489922		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	KLF5	chr13	73638021	+	PIBF1	chr13	73590007	+
Frame-shit	ENST00000377687	ENST00000326291		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	KLF5	chr13	73638021	+	PIBF1	chr13	73590007	+
5CDS-3UTR	ENST00000377687	ENST00000489922		TCGA	RV	ESCA	TCGA-LN-A4MQ-01A	KLF5	chr13	73638021	+	PIBF1	chr13	73590007	+
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404621	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404621	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404121	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404121	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000356219	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000356219	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000397355	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000397355	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000429285	ENST00000376788		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000429285	ENST00000546215		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	ESCA	TCGA-L5-A891-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000394287	ENST00000336308		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-intron	ENST00000394287	ENST00000578232		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000394287	ENST00000544210		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000394287	ENST00000394250		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000394287	ENST00000580611		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300651	ENST00000336308		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-intron	ENST00000300651	ENST00000578232		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300651	ENST00000544210		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300651	ENST00000394250		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000300651	ENST00000580611		TCGA	RV	ESCA	TCGA-L5-A88V-01A	MED1	chr17	37580880	-	STARD3	chr17	37809734	+
intron-3CDS	ENST00000437089	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000437089	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000437089	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000437089	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-3CDS	ENST00000454678	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-3CDS	ENST00000454678	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-5UTR	ENST00000454678	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000454678	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-3CDS	ENST00000453195	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-3CDS	ENST00000453195	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-5UTR	ENST00000453195	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000453195	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-3CDS	ENST00000487829	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-3CDS	ENST00000487829	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-5UTR	ENST00000487829	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
5UTR-intron	ENST00000487829	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000456770	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000456770	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000456770	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456770	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000439094	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000439094	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000439094	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000439094	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000425523	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000425523	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000425523	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425523	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000484938	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000484938	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000484938	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000484938	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000438908	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000438908	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000438908	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438908	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000455000	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000455000	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000455000	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000455000	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000436219	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000436219	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000436219	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000436219	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000475230	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000475230	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000475230	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000475230	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000433314	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000433314	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000433314	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000433314	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000447711	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000447711	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000447711	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000447711	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000456093	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000456093	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000456093	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000456093	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000486529	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000486529	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000486529	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000486529	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000438384	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000438384	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000438384	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000438384	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000432326	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000432326	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000432326	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000432326	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000425831	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000425831	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000425831	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000425831	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000481596	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000481596	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000481596	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000481596	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000463977	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000463977	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000463977	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000463977	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000383607	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000383607	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000383607	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000383607	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000327357	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000327357	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000327357	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000327357	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000396558	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000396558	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000396558	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000396558	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000450392	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000450392	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000450392	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000450392	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000415923	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000415923	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000415923	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000415923	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000428486	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000428486	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000428486	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000428486	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000477569	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000477569	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000477569	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477569	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000422349	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000422349	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000422349	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000422349	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000445259	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000445259	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000445259	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000445259	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000427535	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000427535	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000427535	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000427535	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000477353	ENST00000376437		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000477353	ENST00000376442		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-5UTR	ENST00000477353	ENST00000480966		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000477800		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000548461		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000449861		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000417308		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000492529		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000451748		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000424672		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000480637		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000453879		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000458094		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000462469		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000383576		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000383577		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000485518		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000414052		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000451456		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000461170		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000421095		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000445379		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-intron	ENST00000477353	ENST00000481393		TCGA	RV	ESCA	TCGA-JY-A939-01A	TRIM26	chr6	30181082	-	DHX16	chr6	30628019	-
intron-3CDS	ENST00000541478	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000535715	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000422031	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000428192	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000538426	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000543004	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
3UTR-3CDS	ENST00000536443	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000543988	ENST00000314133		TCGA	RV	ESCA	TCGA-L5-A891-01A	OTUB1	chr11	63756224	+	COX8A	chr11	63743697	+
In-frame	ENST00000388890	ENST00000336308		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000388890	ENST00000578232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000388890	ENST00000544210		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000388890	ENST00000394250		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000388890	ENST00000580611		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
In-frame	ENST00000323510	ENST00000336308		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000323510	ENST00000578232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000323510	ENST00000544210		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000323510	ENST00000394250		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000323510	ENST00000580611		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
In-frame	ENST00000483173	ENST00000336308		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000483173	ENST00000578232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000483173	ENST00000544210		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000483173	ENST00000394250		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000483173	ENST00000580611		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
In-frame	ENST00000467963	ENST00000336308		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000467963	ENST00000578232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000467963	ENST00000544210		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000467963	ENST00000394250		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000467963	ENST00000580611		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3CDS	ENST00000435709	ENST00000336308		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000435709	ENST00000578232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000435709	ENST00000544210		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000435709	ENST00000394250		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-intron	ENST00000435709	ENST00000580611		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3CDS	ENST00000494422	ENST00000336308		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000494422	ENST00000578232		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000494422	ENST00000544210		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000494422	ENST00000394250		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
intron-intron	ENST00000494422	ENST00000580611		TCGA	RV	ESCA	TCGA-R6-A8W5-01B	BRD9	chr5	876216	-	STARD3	chr17	37813261	+
Frame-shit	ENST00000379802	ENST00000379953		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	DSP	chr6	7542318	+	LY86	chr6	6649858	+
Frame-shit	ENST00000379802	ENST00000230568		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	DSP	chr6	7542318	+	LY86	chr6	6649858	+
Frame-shit	ENST00000418664	ENST00000379953		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	DSP	chr6	7542318	+	LY86	chr6	6649858	+
Frame-shit	ENST00000418664	ENST00000230568		TCGA	RV	ESCA	TCGA-JY-A6FD-01A	DSP	chr6	7542318	+	LY86	chr6	6649858	+
Frame-shit	ENST00000324096	ENST00000199764		TCGA	RV	ESCA	TCGA-L5-A891-01A	MAP1S	chr19	17835017	+	CEACAM6	chr19	42270091	+
intron-3CDS	ENST00000597681	ENST00000199764		TCGA	RV	ESCA	TCGA-L5-A891-01A	MAP1S	chr19	17835017	+	CEACAM6	chr19	42270091	+
Frame-shit	ENST00000544059	ENST00000199764		TCGA	RV	ESCA	TCGA-L5-A891-01A	MAP1S	chr19	17835017	+	CEACAM6	chr19	42270091	+
In-frame	ENST00000584601	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000406381	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000541774	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000445658	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000540147	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000584450	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000269571	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
intron-3CDS	ENST00000578199	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
intron-3CDS	ENST00000540042	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
intron-3CDS	ENST00000584888	ENST00000225426		TCGA	RV	ESCA	TCGA-L5-A88V-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000584601	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584601	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000406381	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000541774	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000445658	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540147	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000584450	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000269571	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000578199	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
In-frame	ENST00000540042	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	ERBB2	chr17	37872192	+	PPP1R1B	chr17	37790136	+
intron-5UTR	ENST00000336934	ENST00000355854		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000336934	ENST00000347776		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000336934	ENST00000409308		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000336934	ENST00000410043		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-intron	ENST00000336934	ENST00000409130		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000336934	ENST00000476943		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000255486	ENST00000355854		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000255486	ENST00000347776		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000255486	ENST00000409308		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000255486	ENST00000410043		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-intron	ENST00000255486	ENST00000409130		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000255486	ENST00000476943		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000399365	ENST00000355854		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000399365	ENST00000347776		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000399365	ENST00000409308		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000399365	ENST00000410043		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-intron	ENST00000399365	ENST00000409130		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000399365	ENST00000476943		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000487412	ENST00000355854		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000487412	ENST00000347776		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000487412	ENST00000409308		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000487412	ENST00000410043		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-intron	ENST00000487412	ENST00000409130		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000487412	ENST00000476943		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000439831	ENST00000355854		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000439831	ENST00000347776		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000439831	ENST00000409308		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000439831	ENST00000410043		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-intron	ENST00000439831	ENST00000409130		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000439831	ENST00000476943		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	STARD13	chr13	33924427	-	CAB39L	chr13	49957077	-
5CDS-3UTR	ENST00000339208	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000339208	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-3UTR	ENST00000346661	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000346661	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-3UTR	ENST00000345615	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000345615	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-3UTR	ENST00000502449	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000502449	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-3UTR	ENST00000591288	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000591288	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-3UTR	ENST00000394378	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000394378	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-3UTR	ENST00000585472	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5CDS-intron	ENST00000585472	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5UTR-3UTR	ENST00000588194	ENST00000349699		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
5UTR-intron	ENST00000588194	ENST00000394367		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	SYNRG	chr17	35928893	-	DDX52	chr17	35969957	-
intron-5UTR	ENST00000215794	ENST00000395738		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	USP18	chr22	18644253	+	ADM2	chr22	50920021	+
intron-5UTR	ENST00000215794	ENST00000362068		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	USP18	chr22	18644253	+	ADM2	chr22	50920021	+
intron-intron	ENST00000215794	ENST00000395737		TCGA	LD	ESCA	TCGA-2H-A9GF-01A	USP18	chr22	18644253	+	ADM2	chr22	50920021	+
intron-3CDS	ENST00000394235	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
intron-3CDS	ENST00000379549	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
intron-3CDS	ENST00000379550	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
intron-3CDS	ENST00000265495	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
intron-3CDS	ENST00000358635	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
intron-3CDS	ENST00000510408	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
intron-3CDS	ENST00000515489	ENST00000398955		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	ELF2	chr4	139979823	-	MGARP	chr4	140189919	-
In-frame	ENST00000367866	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
In-frame	ENST00000367866	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5CDS-3UTR	ENST00000367866	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3CDS	ENST00000452019	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3CDS	ENST00000452019	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3UTR	ENST00000452019	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
In-frame	ENST00000429375	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
In-frame	ENST00000429375	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5CDS-3UTR	ENST00000429375	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
3UTR-3CDS	ENST00000367865	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
3UTR-3CDS	ENST00000367865	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
3UTR-3UTR	ENST00000367865	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3CDS	ENST00000541643	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3CDS	ENST00000541643	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3UTR	ENST00000541643	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3CDS	ENST00000420254	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3CDS	ENST00000420254	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
5UTR-3UTR	ENST00000420254	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
intron-3CDS	ENST00000367862	ENST00000367872		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
intron-3CDS	ENST00000367862	ENST00000367870		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
intron-3UTR	ENST00000367862	ENST00000491055		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166973417	+
Frame-shit	ENST00000312989	ENST00000393877		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
Frame-shit	ENST00000312989	ENST00000308022		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
5CDS-5UTR	ENST00000312989	ENST00000541059		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
5CDS-5UTR	ENST00000312989	ENST00000452789		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
intron-3CDS	ENST00000532446	ENST00000393877		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
intron-3CDS	ENST00000532446	ENST00000308022		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
intron-5UTR	ENST00000532446	ENST00000541059		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
intron-5UTR	ENST00000532446	ENST00000452789		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
Frame-shit	ENST00000376745	ENST00000393877		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
Frame-shit	ENST00000376745	ENST00000308022		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
5CDS-5UTR	ENST00000376745	ENST00000541059		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
5CDS-5UTR	ENST00000376745	ENST00000452789		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
Frame-shit	ENST00000358239	ENST00000393877		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
Frame-shit	ENST00000358239	ENST00000308022		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
5CDS-5UTR	ENST00000358239	ENST00000541059		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
5CDS-5UTR	ENST00000358239	ENST00000452789		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PPP1CA	chr11	67169199	-	TMEM134	chr11	67234859	-
intron-3CDS	ENST00000408388	ENST00000311812		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PVT1	chr8	128806980	+	SNX31	chr8	101648239	-
intron-intron	ENST00000408388	ENST00000428383		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PVT1	chr8	128806980	+	SNX31	chr8	101648239	-
intron-intron	ENST00000408388	ENST00000519521		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PVT1	chr8	128806980	+	SNX31	chr8	101648239	-
intron-3CDS	ENST00000408388	ENST00000453321		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PVT1	chr8	128806980	+	TMEM67	chr8	94808129	+
intron-3CDS	ENST00000408388	ENST00000409623		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PVT1	chr8	128806980	+	TMEM67	chr8	94808129	+
intron-intron	ENST00000408388	ENST00000425545		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	PVT1	chr8	128806980	+	TMEM67	chr8	94808129	+
Frame-shit	ENST00000315082	ENST00000262305		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RHOT2	chr16	718699	+	RAB11FIP3	chr16	521295	+
Frame-shit	ENST00000315082	ENST00000457159		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RHOT2	chr16	718699	+	RAB11FIP3	chr16	521295	+
5CDS-intron	ENST00000315082	ENST00000450428		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RHOT2	chr16	718699	+	RAB11FIP3	chr16	521295	+
3UTR-3CDS	ENST00000569943	ENST00000262305		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RHOT2	chr16	718699	+	RAB11FIP3	chr16	521295	+
3UTR-3CDS	ENST00000569943	ENST00000457159		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RHOT2	chr16	718699	+	RAB11FIP3	chr16	521295	+
3UTR-intron	ENST00000569943	ENST00000450428		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RHOT2	chr16	718699	+	RAB11FIP3	chr16	521295	+
In-frame	ENST00000523629	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5CDS-3UTR	ENST00000523629	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3CDS	ENST00000396218	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3UTR	ENST00000396218	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
In-frame	ENST00000265814	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5CDS-3UTR	ENST00000265814	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3CDS	ENST00000360348	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3UTR	ENST00000360348	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3CDS	ENST00000436581	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3UTR	ENST00000436581	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3CDS	ENST00000520724	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3UTR	ENST00000520724	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5UTR-3CDS	ENST00000518844	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5UTR-3UTR	ENST00000518844	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5UTR-3CDS	ENST00000522163	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5UTR-3UTR	ENST00000522163	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3CDS	ENST00000422361	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3UTR	ENST00000422361	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3CDS	ENST00000521553	ENST00000263849		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
intron-3UTR	ENST00000521553	ENST00000521176		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	RUNX1T1	chr8	93088193	-	ZC2HC1A	chr8	79590798	+
5UTR-3CDS	ENST00000310924	ENST00000354189		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5UTR-3CDS	ENST00000310924	ENST00000395987		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5UTR-5UTR	ENST00000310924	ENST00000395990		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5UTR-5UTR	ENST00000310924	ENST00000320267		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5UTR-5UTR	ENST00000310924	ENST00000537577		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5UTR-intron	ENST00000310924	ENST00000545133		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5UTR-5UTR	ENST00000310924	ENST00000557684		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000576768	ENST00000354189		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000576768	ENST00000395987		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000576768	ENST00000395990		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000576768	ENST00000320267		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000576768	ENST00000537577		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-intron	ENST00000576768	ENST00000545133		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000576768	ENST00000557684		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000340848	ENST00000354189		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000340848	ENST00000395987		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000340848	ENST00000395990		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000340848	ENST00000320267		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000340848	ENST00000537577		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-intron	ENST00000340848	ENST00000545133		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000340848	ENST00000557684		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000572862	ENST00000354189		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000572862	ENST00000395987		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000572862	ENST00000395990		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000572862	ENST00000320267		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000572862	ENST00000537577		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-intron	ENST00000572862	ENST00000545133		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000572862	ENST00000557684		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000570373	ENST00000354189		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-3CDS	ENST00000570373	ENST00000395987		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000570373	ENST00000395990		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000570373	ENST00000320267		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000570373	ENST00000537577		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-intron	ENST00000570373	ENST00000545133		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
intron-5UTR	ENST00000570373	ENST00000557684		TCGA	LD	ESCA	TCGA-2H-A9GG-01A	TBC1D16	chr17	78009594	-	CASC1	chr12	25314131	-
5CDS-intron	ENST00000456935	ENST00000544494		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000456935	ENST00000380339		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000456935	ENST00000393261		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000456935	ENST00000587955		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000221363	ENST00000544494		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000221363	ENST00000380339		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000221363	ENST00000393261		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
5CDS-intron	ENST00000221363	ENST00000587955		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
intron-intron	ENST00000495617	ENST00000544494		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
intron-intron	ENST00000495617	ENST00000380339		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
intron-intron	ENST00000495617	ENST00000393261		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
intron-intron	ENST00000495617	ENST00000587955		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	MAN2B1	chr19	12759950	-	FBXW9	chr19	12802268	-
intron-5UTR	ENST00000494757	ENST00000301665		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
intron-intron	ENST00000494757	ENST00000496847		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-5UTR	ENST00000323571	ENST00000301665		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000323571	ENST00000496847		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-5UTR	ENST00000585043	ENST00000301665		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000585043	ENST00000496847		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-5UTR	ENST00000394103	ENST00000301665		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000394103	ENST00000496847		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-5UTR	ENST00000536600	ENST00000301665		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000536600	ENST00000496847		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-5UTR	ENST00000583130	ENST00000301665		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000583130	ENST00000496847		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	WIPF2	chr17	38412774	+	TMEM99	chr17	38989367	+
In-frame	ENST00000344157	ENST00000314167		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
In-frame	ENST00000344157	ENST00000511163		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
5CDS-intron	ENST00000344157	ENST00000509566		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
In-frame	ENST00000355665	ENST00000314167		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
In-frame	ENST00000355665	ENST00000511163		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
5CDS-intron	ENST00000355665	ENST00000509566		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
In-frame	ENST00000579690	ENST00000314167		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
In-frame	ENST00000579690	ENST00000511163		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
5CDS-intron	ENST00000579690	ENST00000509566		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
intron-3CDS	ENST00000552105	ENST00000314167		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
intron-3CDS	ENST00000552105	ENST00000511163		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
intron-intron	ENST00000552105	ENST00000509566		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
intron-3CDS	ENST00000550485	ENST00000314167		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
intron-3CDS	ENST00000550485	ENST00000511163		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
intron-intron	ENST00000550485	ENST00000509566		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	YTHDC1	chr4	69215444	-	GAK	chr4	891946	-
5UTR-3CDS	ENST00000307750	ENST00000341998		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	ZBTB5	chr9	37465212	-	SLC24A2	chr9	19577020	-
5UTR-3CDS	ENST00000307750	ENST00000286344		TCGA	LD	ESCA	TCGA-2H-A9GI-01A	ZBTB5	chr9	37465212	-	SLC24A2	chr9	19577020	-
5CDS-5UTR	ENST00000518421	ENST00000523510		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	AP3M2	chr8	42023078	+	PCAT2	chr8	128091378	-
5CDS-5UTR	ENST00000174653	ENST00000523510		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	AP3M2	chr8	42023078	+	PCAT2	chr8	128091378	-
5CDS-5UTR	ENST00000396926	ENST00000523510		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	AP3M2	chr8	42023078	+	PCAT2	chr8	128091378	-
intron-5UTR	ENST00000520685	ENST00000523510		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	AP3M2	chr8	42023078	+	PCAT2	chr8	128091378	-
5CDS-5UTR	ENST00000517922	ENST00000523510		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	AP3M2	chr8	42023078	+	PCAT2	chr8	128091378	-
intron-3CDS	ENST00000225823	ENST00000355528		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000225823	ENST00000397466		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000225823	ENST00000539345		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000225823	ENST00000576691		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-3CDS	ENST00000359872	ENST00000355528		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000359872	ENST00000397466		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000359872	ENST00000539345		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000359872	ENST00000576691		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-3CDS	ENST00000448983	ENST00000355528		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000448983	ENST00000397466		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000448983	ENST00000539345		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
intron-intron	ENST00000448983	ENST00000576691		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	ASIC2	chr17	32501579	-	TBCD	chr17	80879377	+
5UTR-3CDS	ENST00000356093	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
5UTR-3CDS	ENST00000398863	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
5UTR-3CDS	ENST00000343067	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
5UTR-3CDS	ENST00000349460	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
5UTR-3CDS	ENST00000373800	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
5UTR-3CDS	ENST00000347529	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
intron-3CDS	ENST00000373798	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
intron-3CDS	ENST00000373797	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
intron-3CDS	ENST00000460378	ENST00000322028		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	EPB41	chr1	29213722	+	POLR2L	chr11	840480	-
intron-3CDS	ENST00000421306	ENST00000574876		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000421306	ENST00000572293		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000421306	ENST00000269230		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000421306	ENST00000301396		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-5UTR	ENST00000421306	ENST00000436683		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-5UTR	ENST00000421306	ENST00000570823		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000262483	ENST00000574876		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000262483	ENST00000572293		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000262483	ENST00000269230		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000262483	ENST00000301396		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
5CDS-5UTR	ENST00000262483	ENST00000436683		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
5CDS-5UTR	ENST00000262483	ENST00000570823		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000576664	ENST00000574876		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000576664	ENST00000572293		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000576664	ENST00000269230		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-3CDS	ENST00000576664	ENST00000301396		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-5UTR	ENST00000576664	ENST00000436683		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
intron-5UTR	ENST00000576664	ENST00000570823		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PITPNM3	chr17	6428676	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000356692	ENST00000418530		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000356692	ENST00000256707		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000356692	ENST00000427284		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000356692	ENST00000473731		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000356692	ENST00000319688		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5CDS-intron	ENST00000356692	ENST00000436566		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5UTR-3CDS	ENST00000295862	ENST00000418530		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5UTR-3CDS	ENST00000295862	ENST00000256707		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5UTR-3CDS	ENST00000295862	ENST00000427284		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5UTR-3CDS	ENST00000295862	ENST00000473731		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5UTR-3CDS	ENST00000295862	ENST00000319688		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5UTR-intron	ENST00000295862	ENST00000436566		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000394284	ENST00000418530		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000394284	ENST00000256707		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000394284	ENST00000427284		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000394284	ENST00000473731		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000394284	ENST00000319688		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5CDS-intron	ENST00000394284	ENST00000436566		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000495566	ENST00000418530		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000495566	ENST00000256707		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000495566	ENST00000427284		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000495566	ENST00000473731		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000495566	ENST00000319688		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
5CDS-intron	ENST00000495566	ENST00000436566		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	PPP4R2	chr3	73047309	+	KIDINS220	chr2	8919944	-
Frame-shit	ENST00000340513	ENST00000444746		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000340513	ENST00000453091		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000340513	ENST00000428287		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000340513	ENST00000243326		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000340513	ENST00000430328		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
5CDS-intron	ENST00000340513	ENST00000433166		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
5CDS-intron	ENST00000340513	ENST00000457745		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000300403	ENST00000444746		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000300403	ENST00000453091		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000300403	ENST00000428287		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000300403	ENST00000243326		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
Frame-shit	ENST00000300403	ENST00000430328		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
5CDS-intron	ENST00000300403	ENST00000433166		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
5CDS-intron	ENST00000300403	ENST00000457745		TCGA	LD	ESCA	TCGA-2H-A9GJ-01A	TPX2	chr20	30347982	+	RIF1	chr2	152315325	+
5CDS-intron	ENST00000296511	ENST00000513449		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000296511	ENST00000389737		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000296511	ENST00000511366		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000501272	ENST00000513449		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000501272	ENST00000389737		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000501272	ENST00000511366		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000515017	ENST00000513449		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000515017	ENST00000389737		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000515017	ENST00000511366		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
intron-intron	ENST00000509016	ENST00000513449		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
intron-intron	ENST00000509016	ENST00000389737		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
intron-3UTR	ENST00000509016	ENST00000511366		TCGA	LD	ESCA	TCGA-2H-A9GM-01A	ANXA5	chr4	122599049	-	TRMT44	chr4	8494993	+
intron-intron	ENST00000331204	ENST00000392347		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000331204	ENST00000389641		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000331204	ENST00000392346		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-5UTR	ENST00000331204	ENST00000327026		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000331204	ENST00000392343		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000505490	ENST00000392347		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000505490	ENST00000389641		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000505490	ENST00000392346		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-5UTR	ENST00000505490	ENST00000327026		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000505490	ENST00000392343		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000512673	ENST00000392347		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000512673	ENST00000389641		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000512673	ENST00000392346		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-5UTR	ENST00000512673	ENST00000327026		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
intron-intron	ENST00000512673	ENST00000392343		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	ALYREF	chr17	79846317	-	CCDC57	chr17	80113504	-
5CDS-intron	ENST00000559624	ENST00000308580		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000559624	ENST00000544199		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000559624	ENST00000561136		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000382727	ENST00000308580		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000382727	ENST00000544199		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000382727	ENST00000561136		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000263791	ENST00000308580		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000263791	ENST00000544199		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5CDS-intron	ENST00000263791	ENST00000561136		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
intron-intron	ENST00000560648	ENST00000308580		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
intron-intron	ENST00000560648	ENST00000544199		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
intron-intron	ENST00000560648	ENST00000561136		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
intron-intron	ENST00000559311	ENST00000308580		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
intron-intron	ENST00000559311	ENST00000544199		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
intron-intron	ENST00000559311	ENST00000561136		TCGA	LD	ESCA	TCGA-2H-A9GN-01A	EIF2AK4	chr15	40247969	+	TMOD3	chr15	52223228	+
5UTR-3CDS	ENST00000358767	ENST00000178640		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000358767	ENST00000560591		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000358767	ENST00000395476		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000358767	ENST00000354498		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000358767	ENST00000340972		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-3CDS	ENST00000546225	ENST00000178640		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000546225	ENST00000560591		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000546225	ENST00000395476		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000546225	ENST00000354498		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5UTR-intron	ENST00000546225	ENST00000340972		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
Frame-shit	ENST00000335894	ENST00000178640		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000335894	ENST00000560591		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000335894	ENST00000395476		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000335894	ENST00000354498		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000335894	ENST00000340972		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-3CDS	ENST00000360277	ENST00000178640		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000360277	ENST00000560591		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000360277	ENST00000395476		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000360277	ENST00000354498		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000360277	ENST00000340972		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
Frame-shit	ENST00000512104	ENST00000178640		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000512104	ENST00000560591		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000512104	ENST00000395476		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000512104	ENST00000354498		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000512104	ENST00000340972		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-3CDS	ENST00000560790	ENST00000178640		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000560790	ENST00000560591		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000560790	ENST00000395476		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000560790	ENST00000354498		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
intron-intron	ENST00000560790	ENST00000340972		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	68098984	+
In-frame	ENST00000013125	ENST00000261699		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
In-frame	ENST00000013125	ENST00000267436		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
In-frame	ENST00000013125	ENST00000421284		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000013125	ENST00000555423		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000013125	ENST00000555610		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
5CDS-intron	ENST00000013125	ENST00000556393		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000557578	ENST00000261699		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000557578	ENST00000267436		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
intron-3CDS	ENST00000557578	ENST00000421284		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
intron-intron	ENST00000557578	ENST00000555423		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
intron-intron	ENST00000557578	ENST00000555610		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
intron-intron	ENST00000557578	ENST00000556393		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	MAP4K5	chr14	50901112	-	L2HGDH	chr14	50736048	-
5CDS-3UTR	ENST00000368357	ENST00000567272		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	NCOA7	chr6	126136550	+	PRELID1P1	chr6	126964716	+
5CDS-3UTR	ENST00000392477	ENST00000567272		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	NCOA7	chr6	126136550	+	PRELID1P1	chr6	126964716	+
5UTR-3UTR	ENST00000229634	ENST00000567272		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	NCOA7	chr6	126136550	+	PRELID1P1	chr6	126964716	+
3UTR-3UTR	ENST00000487635	ENST00000567272		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	NCOA7	chr6	126136550	+	PRELID1P1	chr6	126964716	+
5CDS-5UTR	ENST00000380737	ENST00000521913		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000380737	ENST00000311151		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000380737	ENST00000523027		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-intron	ENST00000380737	ENST00000521983		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000315985	ENST00000521913		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000315985	ENST00000311151		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000315985	ENST00000523027		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
5CDS-intron	ENST00000315985	ENST00000521983		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
3UTR-5UTR	ENST00000523473	ENST00000521913		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
3UTR-5UTR	ENST00000523473	ENST00000311151		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
3UTR-5UTR	ENST00000523473	ENST00000523027		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
3UTR-intron	ENST00000523473	ENST00000521983		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PPP2R2A	chr8	26196503	+	DPYSL2	chr8	26439485	+
Frame-shit	ENST00000373635	ENST00000349938		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
5CDS-3UTR	ENST00000373635	ENST00000483477		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
Frame-shit	ENST00000308696	ENST00000349938		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
5CDS-3UTR	ENST00000308696	ENST00000483477		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
Frame-shit	ENST00000409643	ENST00000349938		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
5CDS-3UTR	ENST00000409643	ENST00000483477		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
3UTR-3CDS	ENST00000488354	ENST00000349938		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
3UTR-3UTR	ENST00000488354	ENST00000483477		TCGA	LD	ESCA	TCGA-2H-A9GQ-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232196505	+
intron-intron	ENST00000537090	ENST00000410032		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-3UTR	ENST00000537090	ENST00000264605		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000537090	ENST00000445024		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000537090	ENST00000468178		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000537090	ENST00000338530		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000537090	ENST00000409373		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000321264	ENST00000410032		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-3UTR	ENST00000321264	ENST00000264605		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000321264	ENST00000445024		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000321264	ENST00000468178		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000321264	ENST00000338530		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000321264	ENST00000409373		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000403782	ENST00000410032		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-3UTR	ENST00000403782	ENST00000264605		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000403782	ENST00000445024		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000403782	ENST00000468178		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000403782	ENST00000338530		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000403782	ENST00000409373		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000342518	ENST00000410032		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-3UTR	ENST00000342518	ENST00000264605		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000342518	ENST00000445024		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000342518	ENST00000468178		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000342518	ENST00000338530		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000342518	ENST00000409373		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000486953	ENST00000410032		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-3UTR	ENST00000486953	ENST00000264605		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000486953	ENST00000445024		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000486953	ENST00000468178		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000486953	ENST00000338530		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
intron-intron	ENST00000486953	ENST00000409373		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	D2HGDH	chr2	242684359	+	MLPH	chr2	238463348	+
5CDS-5UTR	ENST00000261667	ENST00000495963		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
5CDS-3UTR	ENST00000261667	ENST00000378284		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
5CDS-3UTR	ENST00000261667	ENST00000378272		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
5CDS-3UTR	ENST00000261667	ENST00000242827		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
5CDS-3UTR	ENST00000261667	ENST00000378270		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
5CDS-intron	ENST00000261667	ENST00000378282		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
5CDS-intron	ENST00000261667	ENST00000378268		TCGA	LD	ESCA	TCGA-2H-A9GR-01A	KPNA3	chr13	50366574	-	EBPL	chr13	50235344	-
Frame-shit	ENST00000369331	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
5CDS-3UTR	ENST00000369331	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
Frame-shit	ENST00000369321	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
5CDS-3UTR	ENST00000369321	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
Frame-shit	ENST00000345633	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
5CDS-3UTR	ENST00000345633	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
Frame-shit	ENST00000369318	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
5CDS-3UTR	ENST00000369318	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
Frame-shit	ENST00000369315	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
5CDS-3UTR	ENST00000369315	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
intron-3CDS	ENST00000452490	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
intron-3UTR	ENST00000452490	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
intron-3CDS	ENST00000468790	ENST00000298746		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
intron-3UTR	ENST00000468790	ENST00000485065		TCGA	LD	ESCA	TCGA-IC-A6RE-01A	CASP7	chr10	115457362	+	TRUB1	chr10	116702404	+
In-frame	ENST00000359798	ENST00000314118		TCGA	LD	ESCA	TCGA-IC-A6RF-01A	ZNF808	chr19	53046600	+	PIGX	chr3	196454794	+
In-frame	ENST00000359798	ENST00000421265		TCGA	LD	ESCA	TCGA-IC-A6RF-01A	ZNF808	chr19	53046600	+	PIGX	chr3	196454794	+
5CDS-5UTR	ENST00000359798	ENST00000541663		TCGA	LD	ESCA	TCGA-IC-A6RF-01A	ZNF808	chr19	53046600	+	PIGX	chr3	196454794	+
5CDS-intron	ENST00000359798	ENST00000495440		TCGA	LD	ESCA	TCGA-IC-A6RF-01A	ZNF808	chr19	53046600	+	PIGX	chr3	196454794	+
In-frame	ENST00000263579	ENST00000227507		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	CCND1	chr11	69462762	+
Frame-shit	ENST00000263579	ENST00000536559		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	CCND1	chr11	69462762	+
intron-3CDS	ENST00000530860	ENST00000227507		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	CCND1	chr11	69462762	+
intron-3CDS	ENST00000530860	ENST00000536559		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	CCND1	chr11	69462762	+
Frame-shit	ENST00000263579	ENST00000526343		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000263579	ENST00000282441		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000263579	ENST00000537274		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000263579	ENST00000345877		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000263579	ENST00000531439		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000263579	ENST00000524575		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000263579	ENST00000528834		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000530860	ENST00000526343		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000530860	ENST00000282441		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000530860	ENST00000537274		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000530860	ENST00000345877		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000530860	ENST00000531439		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000530860	ENST00000524575		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
intron-intron	ENST00000530860	ENST00000528834		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	DCPS	chr11	126176639	+	YAP1	chr11	102033187	+
In-frame	ENST00000544604	ENST00000266088		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
5CDS-intron	ENST00000544604	ENST00000543737		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
5UTR-3CDS	ENST00000332811	ENST00000266088		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
5UTR-intron	ENST00000332811	ENST00000543737		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
intron-3CDS	ENST00000402174	ENST00000266088		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
intron-intron	ENST00000402174	ENST00000543737		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
intron-3CDS	ENST00000406323	ENST00000266088		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
intron-intron	ENST00000406323	ENST00000543737		TCGA	LD	ESCA	TCGA-IG-A3I8-01A	ZNRF3	chr22	29280054	+	SLC5A1	chr22	32445930	+
5UTR-5UTR	ENST00000396113	ENST00000522455		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000396113	ENST00000521695		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000396113	ENST00000521268		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000396113	ENST00000518566		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000396113	ENST00000517638		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
5UTR-intron	ENST00000396113	ENST00000523850		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
5UTR-intron	ENST00000396113	ENST00000521376		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000286687	ENST00000522455		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000286687	ENST00000521695		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000286687	ENST00000521268		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000286687	ENST00000518566		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000286687	ENST00000517638		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000286687	ENST00000523850		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000286687	ENST00000521376		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396111	ENST00000522455		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396111	ENST00000521695		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396111	ENST00000521268		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396111	ENST00000518566		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396111	ENST00000517638		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000396111	ENST00000523850		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000396111	ENST00000521376		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000521840	ENST00000522455		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000521840	ENST00000521695		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000521840	ENST00000521268		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000521840	ENST00000518566		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000521840	ENST00000517638		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000521840	ENST00000523850		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000521840	ENST00000521376		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000542894	ENST00000522455		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000542894	ENST00000521695		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000542894	ENST00000521268		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000542894	ENST00000518566		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000542894	ENST00000517638		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000542894	ENST00000523850		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000542894	ENST00000521376		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396124	ENST00000522455		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396124	ENST00000521695		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396124	ENST00000521268		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396124	ENST00000518566		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-5UTR	ENST00000396124	ENST00000517638		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000396124	ENST00000523850		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
intron-intron	ENST00000396124	ENST00000521376		TCGA	LD	ESCA	TCGA-IG-A4QS-01A	NDUFAF6	chr8	95908155	+	RALYL	chr8	85441534	+
In-frame	ENST00000254108	ENST00000244174		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000254108	ENST00000424344		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000254108	ENST00000369423		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000254108	ENST00000540897		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-intron	ENST00000254108	ENST00000494962		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
In-frame	ENST00000380244	ENST00000244174		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000380244	ENST00000424344		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000380244	ENST00000369423		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000380244	ENST00000540897		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-intron	ENST00000380244	ENST00000494962		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
In-frame	ENST00000568685	ENST00000244174		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000568685	ENST00000424344		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000568685	ENST00000369423		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-5UTR	ENST00000568685	ENST00000540897		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
5CDS-intron	ENST00000568685	ENST00000494962		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
intron-3CDS	ENST00000474990	ENST00000244174		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
intron-5UTR	ENST00000474990	ENST00000424344		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
intron-5UTR	ENST00000474990	ENST00000369423		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
intron-5UTR	ENST00000474990	ENST00000540897		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
intron-intron	ENST00000474990	ENST00000494962		TCGA	LD	ESCA	TCGA-IG-A51D-01A	FUS	chr16	31193985	+	IL9R	chrY	59335577	+
intron-3CDS	ENST00000437600	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000437600	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000292538	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000292538	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000393824	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000393824	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000547394	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000547394	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000360264	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000360264	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000425244	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000425244	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000292535	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000292535	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000549414	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000549414	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000556210	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000556210	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000550008	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000550008	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000546411	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
Frame-shit	ENST00000546411	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000560541	ENST00000536178		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
intron-3CDS	ENST00000560541	ENST00000306803		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	CUX1	chr7	101848450	+	SH2B2	chr7	101952097	+
In-frame	ENST00000555028	ENST00000216479		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
In-frame	ENST00000555028	ENST00000535854		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
5CDS-intron	ENST00000555028	ENST00000555517		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
5CDS-3UTR	ENST00000555028	ENST00000555457		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
3UTR-3CDS	ENST00000554076	ENST00000216479		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
3UTR-3CDS	ENST00000554076	ENST00000535854		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
3UTR-intron	ENST00000554076	ENST00000555517		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
3UTR-3UTR	ENST00000554076	ENST00000555457		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	LIN52	chr14	74551696	+	AHSA1	chr14	77928503	+
In-frame	ENST00000539805	ENST00000284951		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
In-frame	ENST00000539805	ENST00000378072		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5CDS-5UTR	ENST00000539805	ENST00000486903		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5UTR-3CDS	ENST00000480436	ENST00000284951		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5UTR-3CDS	ENST00000480436	ENST00000378072		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5UTR-5UTR	ENST00000480436	ENST00000486903		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
Frame-shit	ENST00000337743	ENST00000284951		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
Frame-shit	ENST00000337743	ENST00000378072		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5CDS-5UTR	ENST00000337743	ENST00000486903		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
Frame-shit	ENST00000544472	ENST00000284951		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
Frame-shit	ENST00000544472	ENST00000378072		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5CDS-5UTR	ENST00000544472	ENST00000486903		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	TASP1	chr20	13604093	-	SEL1L2	chr20	13830965	-
5UTR-5UTR	ENST00000301215	ENST00000489959		TCGA	LD	ESCA	TCGA-IG-A6QS-01A	ZNF526	chr19	42724539	+	CEACAMP10	chr19	43727110	-
intron-intron	ENST00000418066	ENST00000407572		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
intron-intron	ENST00000418066	ENST00000378240		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
intron-3UTR	ENST00000418066	ENST00000467536		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
5CDS-intron	ENST00000409920	ENST00000407572		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
5CDS-intron	ENST00000409920	ENST00000378240		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
5CDS-3UTR	ENST00000409920	ENST00000467536		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
5CDS-intron	ENST00000394295	ENST00000407572		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
5CDS-intron	ENST00000394295	ENST00000378240		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
5CDS-3UTR	ENST00000394295	ENST00000467536		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
intron-intron	ENST00000536030	ENST00000407572		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
intron-intron	ENST00000536030	ENST00000378240		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
intron-3UTR	ENST00000536030	ENST00000467536		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ANXA4	chr2	70015273	+	MEIG1	chr10	15028795	+
In-frame	ENST00000318522	ENST00000336596		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5CDS-intron	ENST00000318522	ENST00000452448		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5CDS-intron	ENST00000318522	ENST00000494014		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
In-frame	ENST00000402711	ENST00000336596		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5CDS-intron	ENST00000402711	ENST00000452448		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5CDS-intron	ENST00000402711	ENST00000494014		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
intron-3CDS	ENST00000482660	ENST00000336596		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
intron-intron	ENST00000482660	ENST00000452448		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
intron-intron	ENST00000482660	ENST00000494014		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
In-frame	ENST00000401738	ENST00000336596		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5CDS-intron	ENST00000401738	ENST00000452448		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5CDS-intron	ENST00000401738	ENST00000494014		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5UTR-3CDS	ENST00000453191	ENST00000336596		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5UTR-intron	ENST00000453191	ENST00000452448		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
5UTR-intron	ENST00000453191	ENST00000494014		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	EML4	chr2	42528532	+	EPHA3	chr3	89498375	+
In-frame	ENST00000337532	ENST00000320985		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
In-frame	ENST00000337532	ENST00000361642		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000337532	ENST00000559858		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000337532	ENST00000560721		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000337532	ENST00000542815		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000337532	ENST00000446923		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
In-frame	ENST00000375732	ENST00000320985		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
In-frame	ENST00000375732	ENST00000361642		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375732	ENST00000559858		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375732	ENST00000560721		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375732	ENST00000542815		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375732	ENST00000446923		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
Frame-shit	ENST00000540098	ENST00000320985		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
Frame-shit	ENST00000540098	ENST00000361642		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000540098	ENST00000559858		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000540098	ENST00000560721		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000540098	ENST00000542815		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000540098	ENST00000446923		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
In-frame	ENST00000375719	ENST00000320985		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
In-frame	ENST00000375719	ENST00000361642		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375719	ENST00000559858		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375719	ENST00000560721		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375719	ENST00000542815		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-3UTR	ENST00000375719	ENST00000446923		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
intron-3CDS	ENST00000445954	ENST00000320985		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
intron-3CDS	ENST00000445954	ENST00000361642		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
intron-3UTR	ENST00000445954	ENST00000559858		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
intron-3UTR	ENST00000445954	ENST00000560721		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
intron-3UTR	ENST00000445954	ENST00000542815		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
intron-3UTR	ENST00000445954	ENST00000446923		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5UTR-3CDS	ENST00000481244	ENST00000320985		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5UTR-3CDS	ENST00000481244	ENST00000361642		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5UTR-3UTR	ENST00000481244	ENST00000559858		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5UTR-3UTR	ENST00000481244	ENST00000560721		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5UTR-3UTR	ENST00000481244	ENST00000542815		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5UTR-3UTR	ENST00000481244	ENST00000446923		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	MPP7	chr10	28491082	-	ZEB1	chr10	31791276	+
5CDS-intron	ENST00000595830	ENST00000351097		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000595830	ENST00000285679		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000595830	ENST00000285681		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000595830	ENST00000400183		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000595830	ENST00000547201		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000396147	ENST00000351097		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000396147	ENST00000285679		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000396147	ENST00000285681		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000396147	ENST00000400183		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000396147	ENST00000547201		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599086	ENST00000351097		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599086	ENST00000285679		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599086	ENST00000285681		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599086	ENST00000400183		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599086	ENST00000547201		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000425570	ENST00000351097		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000425570	ENST00000285679		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000425570	ENST00000285681		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000425570	ENST00000400183		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000425570	ENST00000547201		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000600989	ENST00000351097		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000600989	ENST00000285679		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000600989	ENST00000285681		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000600989	ENST00000400183		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
5CDS-intron	ENST00000600989	ENST00000547201		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599852	ENST00000351097		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599852	ENST00000285679		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599852	ENST00000285681		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599852	ENST00000400183		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
intron-intron	ENST00000599852	ENST00000547201		TCGA	LD	ESCA	TCGA-IG-A8O2-01A	ZNF418	chr19	58441796	-	USP25	chr21	17203720	+
In-frame	ENST00000326793	ENST00000310380		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000326793	ENST00000437101		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
In-frame	ENST00000326793	ENST00000429994		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000326793	ENST00000355729		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
5CDS-5UTR	ENST00000326793	ENST00000460582		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
5CDS-5UTR	ENST00000326793	ENST00000356740		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000310380		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000437101		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000429994		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000355729		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000472860	ENST00000460582		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000472860	ENST00000356740		TCGA	LD	ESCA	TCGA-IG-A97H-01A	ACAP2	chr3	195163524	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000344034	ENST00000260570		TCGA	LD	ESCA	TCGA-IG-A97H-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682389	-
5CDS-intron	ENST00000344034	ENST00000359466		TCGA	LD	ESCA	TCGA-IG-A97H-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682389	-
5CDS-intron	ENST00000344034	ENST00000416524		TCGA	LD	ESCA	TCGA-IG-A97H-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682389	-
Frame-shit	ENST00000350803	ENST00000260570		TCGA	LD	ESCA	TCGA-IG-A97H-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682389	-
5CDS-intron	ENST00000350803	ENST00000359466		TCGA	LD	ESCA	TCGA-IG-A97H-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682389	-
5CDS-intron	ENST00000350803	ENST00000416524		TCGA	LD	ESCA	TCGA-IG-A97H-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682389	-
5UTR-3CDS	ENST00000327134	ENST00000357674		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-3CDS	ENST00000327134	ENST00000314062		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-3CDS	ENST00000327134	ENST00000346964		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-3CDS	ENST00000327134	ENST00000419354		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-intron	ENST00000327134	ENST00000452595		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-intron	ENST00000327134	ENST00000422288		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-intron	ENST00000327134	ENST00000448528		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-intron	ENST00000327134	ENST00000443183		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-intron	ENST00000327134	ENST00000450955		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-intron	ENST00000327134	ENST00000392382		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
5UTR-5UTR	ENST00000327134	ENST00000485409		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PAK2	chr3	196467028	+	DLG1	chr3	196921460	-
intron-3CDS	ENST00000408388	ENST00000262219		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PVT1	chr8	128806980	+	ANXA13	chr8	124724993	-
intron-3CDS	ENST00000408388	ENST00000419625		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PVT1	chr8	128806980	+	ANXA13	chr8	124724993	-
intron-intron	ENST00000408388	ENST00000519045		TCGA	LD	ESCA	TCGA-JY-A6F8-01A	PVT1	chr8	128806980	+	ANXA13	chr8	124724993	-
Frame-shit	ENST00000566620	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000566620	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000268613	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000268613	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000565636	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000565636	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000431540	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000431540	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000428848	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000428848	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000567445	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000567445	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000446376	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000446376	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
In-frame	ENST00000569454	ENST00000219454		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
In-frame	ENST00000569454	ENST00000568638		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	CDH13	chr16	83520260	+	WFDC1	chr16	84358025	+
In-frame	ENST00000584601	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000406381	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000541774	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000445658	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000540147	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000584450	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
In-frame	ENST00000269571	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
intron-3CDS	ENST00000578199	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
intron-3CDS	ENST00000540042	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
intron-3CDS	ENST00000584888	ENST00000225426		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	ERBB2	chr17	37876087	+	PSMB3	chr17	36916684	+
5CDS-5UTR	ENST00000361337	ENST00000373257		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	TOP1	chr20	39658095	+	LPIN3	chr20	39974436	+
5CDS-intron	ENST00000361337	ENST00000491528		TCGA	LD	ESCA	TCGA-JY-A6FA-01A	TOP1	chr20	39658095	+	LPIN3	chr20	39974436	+
Frame-shit	ENST00000359314	ENST00000370310		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	CD2AP	chr6	47445984	+	FAM69A	chr1	93341987	-
intron-3CDS	ENST00000486693	ENST00000370310		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	CD2AP	chr6	47445984	+	FAM69A	chr1	93341987	-
In-frame	ENST00000373060	ENST00000372899		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000373060	ENST00000372901		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000373060	ENST00000372883		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000373060	ENST00000372903		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000373063	ENST00000372899		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000373063	ENST00000372901		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000373063	ENST00000372883		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000373063	ENST00000372903		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000409208	ENST00000372899		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000409208	ENST00000372901		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000409208	ENST00000372883		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000409208	ENST00000372903		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000373057	ENST00000372899		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000373057	ENST00000372901		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000373057	ENST00000372883		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000373057	ENST00000372903		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000307972	ENST00000372899		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
In-frame	ENST00000307972	ENST00000372901		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000307972	ENST00000372883		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
5CDS-intron	ENST00000307972	ENST00000372903		TCGA	LD	ESCA	TCGA-JY-A6FB-01A	FOXP4	chr6	41555635	+	UBR2	chr6	42573459	+
intron-3CDS	ENST00000263867	ENST00000233838		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000263867	ENST00000430215		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-5UTR	ENST00000263867	ENST00000473665		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000409921	ENST00000233838		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000409921	ENST00000430215		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-5UTR	ENST00000409921	ENST00000473665		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000409670	ENST00000233838		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000409670	ENST00000430215		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-5UTR	ENST00000409670	ENST00000473665		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000409724	ENST00000233838		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000409724	ENST00000430215		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-5UTR	ENST00000409724	ENST00000473665		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000483659	ENST00000233838		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-3CDS	ENST00000483659	ENST00000430215		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
intron-5UTR	ENST00000483659	ENST00000473665		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	CAPG	chr2	85626327	-	GGCX	chr2	85781429	-
5CDS-5UTR	ENST00000301067	ENST00000256682		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
5CDS-5UTR	ENST00000301067	ENST00000447318		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
5CDS-5UTR	ENST00000301067	ENST00000541959		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
5CDS-5UTR	ENST00000301067	ENST00000541967		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
intron-5UTR	ENST00000549743	ENST00000256682		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
intron-5UTR	ENST00000549743	ENST00000447318		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
intron-5UTR	ENST00000549743	ENST00000541959		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
intron-5UTR	ENST00000549743	ENST00000541967		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	KMT2D	chr12	49443465	-	ARF3	chr12	49334971	-
intron-5UTR	ENST00000422090	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000422090	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000422090	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-intron	ENST00000422090	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000422090	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000422090	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000413454	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000413454	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000413454	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-intron	ENST00000413454	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000413454	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000413454	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000352066	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000352066	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000352066	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000352066	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000352066	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000352066	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597029	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597029	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597029	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000597029	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597029	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597029	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597723	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597723	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597723	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000597723	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597723	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000597723	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000596217	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000596217	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000596217	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000596217	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000596217	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000596217	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000600583	ENST00000593685		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000600583	ENST00000323039		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000600583	ENST00000348817		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000600583	ENST00000597639		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000600583	ENST00000430012		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000600583	ENST00000601972		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	NUP62	chr19	50430951	-	DYRK1B	chr19	40322608	-
In-frame	ENST00000421905	ENST00000245923		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000421905	ENST00000430715		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000421905	ENST00000344680		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000421905	ENST00000590526		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
5CDS-intron	ENST00000421905	ENST00000589384		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000221462	ENST00000245923		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000221462	ENST00000430715		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000221462	ENST00000344680		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
In-frame	ENST00000221462	ENST00000590526		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
5CDS-intron	ENST00000221462	ENST00000589384		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
intron-3CDS	ENST00000496125	ENST00000245923		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
intron-3CDS	ENST00000496125	ENST00000430715		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
intron-3CDS	ENST00000496125	ENST00000344680		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
intron-3CDS	ENST00000496125	ENST00000590526		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
intron-intron	ENST00000496125	ENST00000589384		TCGA	LD	ESCA	TCGA-JY-A6FD-01A	PPP1R37	chr19	45646891	+	RTN2	chr19	45989371	-
5CDS-intron	ENST00000328194	ENST00000457346		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000328194	ENST00000309263		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000328194	ENST00000450649		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000328194	ENST00000520467		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-5UTR	ENST00000328194	ENST00000534295		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000530044	ENST00000457346		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000530044	ENST00000309263		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000530044	ENST00000450649		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-intron	ENST00000530044	ENST00000520467		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
5CDS-5UTR	ENST00000530044	ENST00000534295		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000527700	ENST00000457346		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000527700	ENST00000309263		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000527700	ENST00000450649		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000527700	ENST00000520467		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-5UTR	ENST00000527700	ENST00000534295		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000526523	ENST00000457346		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000526523	ENST00000309263		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000526523	ENST00000450649		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-intron	ENST00000526523	ENST00000520467		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
intron-5UTR	ENST00000526523	ENST00000534295		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	DENND5A	chr11	9286508	-	SCUBE2	chr11	9144441	-
Frame-shit	ENST00000471389	ENST00000561648		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
Frame-shit	ENST00000471389	ENST00000563137		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
Frame-shit	ENST00000471389	ENST00000562871		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
Frame-shit	ENST00000471389	ENST00000262383		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
Frame-shit	ENST00000471389	ENST00000535559		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
Frame-shit	ENST00000471389	ENST00000567169		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
Frame-shit	ENST00000471389	ENST00000562520		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000561648		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000563137		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000562871		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000262383		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000535559		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000567169		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
5UTR-3CDS	ENST00000394647	ENST00000562520		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000561648		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000563137		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000562871		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000262383		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000535559		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000567169		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000431610	ENST00000562520		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000561648		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000563137		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000562871		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000262383		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000535559		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000567169		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000460382	ENST00000562520		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000561648		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000563137		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000562871		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000262383		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000535559		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000567169		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000463855	ENST00000562520		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000561648		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000563137		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000562871		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000262383		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000535559		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000567169		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-3CDS	ENST00000472835	ENST00000562520		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	FTO	chr16	53738141	+	ZNF423	chr16	49559405	-
intron-intron	ENST00000257290	ENST00000507166		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000257290	ENST00000358575		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000257290	ENST00000337488		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000257290	ENST00000507922		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000257290	ENST00000306932		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000257290	ENST00000510668		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000508170	ENST00000507166		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000508170	ENST00000358575		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000508170	ENST00000337488		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000508170	ENST00000507922		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000508170	ENST00000306932		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
intron-intron	ENST00000508170	ENST00000510668		TCGA	LD	ESCA	TCGA-JY-A6FE-01A	PDGFRA	chr4	55096773	+	FIP1L1	chr4	54319087	+
5CDS-intron	ENST00000304129	ENST00000594520		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	AFAP1L2	chr10	116164199	-	GLUD1P2	chr10	48171409	-
5CDS-intron	ENST00000369271	ENST00000594520		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	AFAP1L2	chr10	116164199	-	GLUD1P2	chr10	48171409	-
5CDS-intron	ENST00000545353	ENST00000594520		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	AFAP1L2	chr10	116164199	-	GLUD1P2	chr10	48171409	-
intron-intron	ENST00000491814	ENST00000594520		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	AFAP1L2	chr10	116164199	-	GLUD1P2	chr10	48171409	-
5CDS-3UTR	ENST00000425346	ENST00000420502		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	CYB561D2	chr3	50388991	+	SLC38A3	chr3	50251582	+
5CDS-3UTR	ENST00000424512	ENST00000420502		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	CYB561D2	chr3	50388991	+	SLC38A3	chr3	50251582	+
5CDS-3UTR	ENST00000232508	ENST00000420502		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	CYB561D2	chr3	50388991	+	SLC38A3	chr3	50251582	+
5CDS-3UTR	ENST00000418577	ENST00000420502		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	CYB561D2	chr3	50388991	+	SLC38A3	chr3	50251582	+
3UTR-3UTR	ENST00000419046	ENST00000420502		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	CYB561D2	chr3	50388991	+	SLC38A3	chr3	50251582	+
5UTR-3CDS	ENST00000543378	ENST00000325874		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
5UTR-intron	ENST00000543378	ENST00000581280		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
5UTR-intron	ENST00000543378	ENST00000394744		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000327564	ENST00000325874		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000327564	ENST00000581280		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000327564	ENST00000394744		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000394713	ENST00000325874		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000394713	ENST00000581280		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000394713	ENST00000394744		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000584368	ENST00000325874		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000584368	ENST00000581280		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000584368	ENST00000394744		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000341671	ENST00000325874		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000341671	ENST00000581280		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000341671	ENST00000394744		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000581786	ENST00000325874		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581786	ENST00000581280		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581786	ENST00000394744		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	LRRC37B	chr17	30335151	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000343053	ENST00000325285		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	NELFB	chr9	140161798	+	FBXW5	chr9	139836136	-
5CDS-5UTR	ENST00000343053	ENST00000483559		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	NELFB	chr9	140161798	+	FBXW5	chr9	139836136	-
intron-3CDS	ENST00000395347	ENST00000263102		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	SLC16A9	chr10	61469237	-	CCDC6	chr10	61552869	-
5UTR-3CDS	ENST00000395348	ENST00000263102		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	SLC16A9	chr10	61469237	-	CCDC6	chr10	61552869	-
5UTR-3CDS	ENST00000490066	ENST00000263102		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	SLC16A9	chr10	61469237	-	CCDC6	chr10	61552869	-
Frame-shit	ENST00000359626	ENST00000394702		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
Frame-shit	ENST00000359626	ENST00000331242		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
Frame-shit	ENST00000359626	ENST00000413276		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
5CDS-intron	ENST00000359626	ENST00000411766		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
5CDS-5UTR	ENST00000359626	ENST00000432937		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
5CDS-5UTR	ENST00000359626	ENST00000394703		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
5CDS-intron	ENST00000359626	ENST00000580710		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
5CDS-5UTR	ENST00000359626	ENST00000414194		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-3CDS	ENST00000491969	ENST00000394702		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-3CDS	ENST00000491969	ENST00000331242		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-3CDS	ENST00000491969	ENST00000413276		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-intron	ENST00000491969	ENST00000411766		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-5UTR	ENST00000491969	ENST00000432937		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-5UTR	ENST00000491969	ENST00000394703		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-intron	ENST00000491969	ENST00000580710		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
intron-5UTR	ENST00000491969	ENST00000414194		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	TYW1	chr7	66582605	+	DMTF1	chr7	86795799	+
Frame-shit	ENST00000450554	ENST00000326321		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
Frame-shit	ENST00000450554	ENST00000270442		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
5CDS-intron	ENST00000450554	ENST00000400827		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
5CDS-intron	ENST00000450554	ENST00000400829		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
Frame-shit	ENST00000308924	ENST00000326321		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
Frame-shit	ENST00000308924	ENST00000270442		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
5CDS-intron	ENST00000308924	ENST00000400827		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
5CDS-intron	ENST00000308924	ENST00000400829		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
intron-3CDS	ENST00000590551	ENST00000326321		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
intron-3CDS	ENST00000590551	ENST00000270442		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
intron-intron	ENST00000590551	ENST00000400827		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
intron-intron	ENST00000590551	ENST00000400829		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	U2AF2	chr19	56170711	+	KIR3DL2	chr19	55363453	+
intron-3CDS	ENST00000360605	ENST00000590247		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000360605	ENST00000419343		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000360605	ENST00000592786		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000360605	ENST00000379316		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-5UTR	ENST00000360605	ENST00000586035		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
In-frame	ENST00000542441	ENST00000590247		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
In-frame	ENST00000542441	ENST00000419343		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
In-frame	ENST00000542441	ENST00000592786		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
In-frame	ENST00000542441	ENST00000379316		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5CDS-5UTR	ENST00000542441	ENST00000586035		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000392271	ENST00000590247		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000392271	ENST00000419343		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000392271	ENST00000592786		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000392271	ENST00000379316		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000392271	ENST00000586035		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
Frame-shit	ENST00000312051	ENST00000590247		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
Frame-shit	ENST00000312051	ENST00000419343		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
Frame-shit	ENST00000312051	ENST00000592786		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
Frame-shit	ENST00000312051	ENST00000379316		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5CDS-5UTR	ENST00000312051	ENST00000586035		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000574176	ENST00000590247		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000574176	ENST00000419343		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000574176	ENST00000592786		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000574176	ENST00000379316		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
intron-5UTR	ENST00000574176	ENST00000586035		TCGA	LD	ESCA	TCGA-JY-A6FH-01A	URI1	chr19	30433571	+	PDCD5	chr19	33073101	+
5CDS-5UTR	ENST00000275230	ENST00000368134		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000275230	ENST00000457563		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000275230	ENST00000439090		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000275230	ENST00000437477		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000275230	ENST00000532763		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000275230	ENST00000533296		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000275230	ENST00000324172		TCGA	LD	ESCA	TCGA-JY-A938-01A	SLC2A12	chr6	134373516	-	SAMD3	chr6	130634238	-
5CDS-5UTR	ENST00000297423	ENST00000259089		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-intron	ENST00000297423	ENST00000529894		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-intron	ENST00000297423	ENST00000525389		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-5UTR	ENST00000518074	ENST00000259089		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-intron	ENST00000518074	ENST00000529894		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-intron	ENST00000518074	ENST00000525389		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-5UTR	ENST00000541342	ENST00000259089		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-intron	ENST00000541342	ENST00000529894		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
5CDS-intron	ENST00000541342	ENST00000525389		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
3UTR-5UTR	ENST00000521214	ENST00000259089		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
3UTR-intron	ENST00000521214	ENST00000529894		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
3UTR-intron	ENST00000521214	ENST00000525389		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-5UTR	ENST00000517693	ENST00000259089		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-intron	ENST00000517693	ENST00000529894		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-intron	ENST00000517693	ENST00000525389		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-5UTR	ENST00000518060	ENST00000259089		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-intron	ENST00000518060	ENST00000529894		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-intron	ENST00000518060	ENST00000525389		TCGA	LD	ESCA	TCGA-JY-A93E-01A	SPIDR	chr8	48206619	+	BLK	chr8	11400733	+
intron-3CDS	ENST00000588752	ENST00000334049		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588752	ENST00000535121		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588752	ENST00000269162		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588752	ENST00000423027		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-intron	ENST00000588752	ENST00000590972		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-5UTR	ENST00000588752	ENST00000602628		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000589238	ENST00000334049		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000589238	ENST00000535121		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000589238	ENST00000269162		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000589238	ENST00000423027		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-intron	ENST00000589238	ENST00000590972		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-5UTR	ENST00000589238	ENST00000602628		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000269159	ENST00000334049		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000269159	ENST00000535121		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000269159	ENST00000269162		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000269159	ENST00000423027		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
5CDS-intron	ENST00000269159	ENST00000590972		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000269159	ENST00000602628		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588927	ENST00000334049		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588927	ENST00000535121		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588927	ENST00000269162		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000588927	ENST00000423027		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-intron	ENST00000588927	ENST00000590972		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
intron-5UTR	ENST00000588927	ENST00000602628		TCGA	LD	ESCA	TCGA-L5-A43C-01A	IMPA2	chr18	11981764	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000539554	ENST00000279550		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
Frame-shit	ENST00000539554	ENST00000228251		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
5CDS-intron	ENST00000539554	ENST00000546164		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
intron-3CDS	ENST00000381881	ENST00000279550		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
intron-3CDS	ENST00000381881	ENST00000228251		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
intron-intron	ENST00000381881	ENST00000546164		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
In-frame	ENST00000320756	ENST00000279550		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
In-frame	ENST00000320756	ENST00000228251		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
5CDS-intron	ENST00000320756	ENST00000546164		TCGA	LD	ESCA	TCGA-L5-A43C-01A	MAGOHB	chr12	10762430	-	YBX3	chr12	10865932	-
5CDS-5UTR	ENST00000216218	ENST00000324000		TCGA	LD	ESCA	TCGA-L5-A43E-01A	ST13	chr22	41244298	-	ST8SIA3	chr18	55019707	+
5CDS-intron	ENST00000216218	ENST00000590600		TCGA	LD	ESCA	TCGA-L5-A43E-01A	ST13	chr22	41244298	-	ST8SIA3	chr18	55019707	+
3UTR-intron	ENST00000260641	ENST00000376250		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
3UTR-intron	ENST00000260641	ENST00000455100		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
intron-intron	ENST00000476840	ENST00000376250		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
intron-intron	ENST00000476840	ENST00000455100		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
intron-intron	ENST00000542850	ENST00000376250		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
intron-intron	ENST00000542850	ENST00000455100		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
3UTR-intron	ENST00000377982	ENST00000376250		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
3UTR-intron	ENST00000377982	ENST00000455100		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ACTR2	chr2	65496707	+	GGACT	chr13	101182723	-
In-frame	ENST00000340748	ENST00000264833		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
5CDS-5UTR	ENST00000340748	ENST00000590841		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
In-frame	ENST00000540357	ENST00000264833		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
5CDS-5UTR	ENST00000540357	ENST00000590841		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
In-frame	ENST00000359526	ENST00000264833		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
5CDS-5UTR	ENST00000359526	ENST00000590841		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
intron-3CDS	ENST00000589538	ENST00000264833		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
intron-5UTR	ENST00000589538	ENST00000590841		TCGA	LD	ESCA	TCGA-L5-A43I-01A	DNMT1	chr19	10246412	-	OLFM2	chr19	9968537	-
In-frame	ENST00000538689	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000538689	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000538689	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000538689	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000538689	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000538689	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000538689	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000538689	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000538689	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000538689	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000538689	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000538689	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000538689	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000220584	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000220584	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000220584	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000220584	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000220584	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000220584	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000220584	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000220584	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000220584	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000220584	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000220584	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000220584	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000220584	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-3CDS	ENST00000446331	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-3CDS	ENST00000446331	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-3CDS	ENST00000446331	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-3CDS	ENST00000446331	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-3CDS	ENST00000446331	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-3CDS	ENST00000446331	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-5UTR	ENST00000446331	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-5UTR	ENST00000446331	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-5UTR	ENST00000446331	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-5UTR	ENST00000446331	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-5UTR	ENST00000446331	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-5UTR	ENST00000446331	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
3UTR-intron	ENST00000446331	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000443614	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000443614	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000443614	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000443614	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000443614	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000443614	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000443614	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000443614	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000443614	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000443614	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000443614	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000443614	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000443614	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525900	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525900	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525900	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525900	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525900	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525900	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525900	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525900	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525900	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525900	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525900	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525900	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000525900	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528812	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528812	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528812	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528812	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528812	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528812	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528812	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528812	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528812	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528812	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528812	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528812	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000528812	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000530664	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000530664	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000530664	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000530664	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000530664	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000530664	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000530664	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000530664	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000530664	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000530664	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000530664	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000530664	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000530664	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528643	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528643	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528643	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528643	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528643	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000528643	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528643	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528643	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528643	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528643	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528643	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000528643	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000528643	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525777	ENST00000395957		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525777	ENST00000395958		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525777	ENST00000457309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525777	ENST00000395956		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525777	ENST00000353245		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
In-frame	ENST00000525777	ENST00000522542		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525777	ENST00000521309		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525777	ENST00000522819		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525777	ENST00000395953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525777	ENST00000395948		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525777	ENST00000395951		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000525777	ENST00000419477		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000525777	ENST00000492736		TCGA	LD	ESCA	TCGA-L5-A43I-01A	FDFT1	chr8	11683724	+	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000298310	ENST00000216373		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
Frame-shit	ENST00000298310	ENST00000543680		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
5CDS-intron	ENST00000298310	ENST00000555794		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-3CDS	ENST00000382135	ENST00000216373		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-3CDS	ENST00000382135	ENST00000543680		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-intron	ENST00000382135	ENST00000555794		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
Frame-shit	ENST00000545773	ENST00000216373		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
Frame-shit	ENST00000545773	ENST00000543680		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
5CDS-intron	ENST00000545773	ENST00000555794		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
5UTR-3CDS	ENST00000556925	ENST00000216373		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
5UTR-3CDS	ENST00000556925	ENST00000543680		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
5UTR-intron	ENST00000556925	ENST00000555794		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-3CDS	ENST00000546046	ENST00000216373		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-3CDS	ENST00000546046	ENST00000543680		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-intron	ENST00000546046	ENST00000555794		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-3CDS	ENST00000556672	ENST00000216373		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-3CDS	ENST00000556672	ENST00000543680		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
intron-intron	ENST00000556672	ENST00000555794		TCGA	LD	ESCA	TCGA-L5-A43I-01A	NEMF	chr14	50280706	-	SOS2	chr14	50612314	-
Frame-shit	ENST00000254260	ENST00000221455		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
Frame-shit	ENST00000254260	ENST00000391953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
Frame-shit	ENST00000254260	ENST00000544944		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
5UTR-3CDS	ENST00000400226	ENST00000221455		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
5UTR-3CDS	ENST00000400226	ENST00000391953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
5UTR-3CDS	ENST00000400226	ENST00000544944		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
intron-3CDS	ENST00000588683	ENST00000221455		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
intron-3CDS	ENST00000588683	ENST00000391953		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
intron-3CDS	ENST00000588683	ENST00000544944		TCGA	LD	ESCA	TCGA-L5-A43I-01A	RHPN2	chr19	33517410	-	CLASRP	chr19	45573795	+
5UTR-5UTR	ENST00000382869	ENST00000382592		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382869	ENST00000542899		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-intron	ENST00000382869	ENST00000472754		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382881	ENST00000382592		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382881	ENST00000542899		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-intron	ENST00000382881	ENST00000472754		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382874	ENST00000382592		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382874	ENST00000542899		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-intron	ENST00000382874	ENST00000472754		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382871	ENST00000382592		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-5UTR	ENST00000382871	ENST00000542899		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5UTR-intron	ENST00000382871	ENST00000472754		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
intron-5UTR	ENST00000382883	ENST00000382592		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
intron-5UTR	ENST00000382883	ENST00000542899		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
intron-intron	ENST00000382883	ENST00000472754		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
intron-5UTR	ENST00000494061	ENST00000382592		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
intron-5UTR	ENST00000494061	ENST00000542899		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
intron-intron	ENST00000494061	ENST00000472754		TCGA	LD	ESCA	TCGA-L5-A43I-01A	ZMYM2	chr13	20534166	+	LATS2	chr13	21620369	-
5CDS-5UTR	ENST00000587625	ENST00000355502		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000587625	ENST00000594617		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000587625	ENST00000447275		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000587625	ENST00000262805		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000587625	ENST00000594465		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000587625	ENST00000539010		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000587625	ENST00000598111		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000587625	ENST00000597297		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000587625	ENST00000596647		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000247970	ENST00000355502		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000247970	ENST00000594617		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000247970	ENST00000447275		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000247970	ENST00000262805		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000247970	ENST00000594465		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000247970	ENST00000539010		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000247970	ENST00000598111		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000247970	ENST00000597297		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000247970	ENST00000596647		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000588695	ENST00000355502		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000588695	ENST00000594617		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000588695	ENST00000447275		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000588695	ENST00000262805		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-5UTR	ENST00000588695	ENST00000594465		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000588695	ENST00000539010		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000588695	ENST00000598111		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000588695	ENST00000597297		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
5CDS-intron	ENST00000588695	ENST00000596647		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-5UTR	ENST00000380889	ENST00000355502		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-5UTR	ENST00000380889	ENST00000594617		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-intron	ENST00000380889	ENST00000447275		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-intron	ENST00000380889	ENST00000262805		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-5UTR	ENST00000380889	ENST00000594465		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-intron	ENST00000380889	ENST00000539010		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-intron	ENST00000380889	ENST00000598111		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-intron	ENST00000380889	ENST00000597297		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
3UTR-intron	ENST00000380889	ENST00000596647		TCGA	LD	ESCA	TCGA-L5-A43J-01A	PIN1	chr19	9949324	+	PDE4C	chr19	18344210	-
intron-3CDS	ENST00000357103	ENST00000421587		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000357103	ENST00000318588		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000357103	ENST00000361962		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000357103	ENST00000378163		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000357103	ENST00000378158		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000357103	ENST00000378166		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000357103	ENST00000442742		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-intron	ENST00000357103	ENST00000472704		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-intron	ENST00000357103	ENST00000378154		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000421587		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000318588		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000361962		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000378163		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000378158		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000378166		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-3CDS	ENST00000544470	ENST00000442742		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-intron	ENST00000544470	ENST00000472704		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
intron-intron	ENST00000544470	ENST00000378154		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ADIPOR2	chr12	1800379	+	CASK	chrX	41383287	-
In-frame	ENST00000435504	ENST00000380649		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5CDS-intron	ENST00000435504	ENST00000457468		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5CDS-intron	ENST00000435504	ENST00000461025		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5UTR-3CDS	ENST00000336112	ENST00000380649		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000336112	ENST00000457468		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000336112	ENST00000461025		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5UTR-3CDS	ENST00000272341	ENST00000380649		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000272341	ENST00000457468		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000272341	ENST00000461025		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
intron-3CDS	ENST00000404843	ENST00000380649		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
intron-intron	ENST00000404843	ENST00000457468		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
intron-intron	ENST00000404843	ENST00000461025		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
intron-3CDS	ENST00000497092	ENST00000380649		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
intron-intron	ENST00000497092	ENST00000457468		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
intron-intron	ENST00000497092	ENST00000461025		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ASXL2	chr2	26101035	-	HADHA	chr2	26432758	-
In-frame	ENST00000262367	ENST00000294016		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4043511	-
5CDS-5UTR	ENST00000262367	ENST00000571889		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4043511	-
In-frame	ENST00000382070	ENST00000294016		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4043511	-
5CDS-5UTR	ENST00000382070	ENST00000571889		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CREBBP	chr16	3929833	-	ADCY9	chr16	4043511	-
intron-3CDS	ENST00000261798	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
Frame-shit	ENST00000377843	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
intron-3CDS	ENST00000515435	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
intron-3CDS	ENST00000504676	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
Frame-shit	ENST00000515768	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
Frame-shit	ENST00000606719	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
intron-3CDS	ENST00000606299	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
intron-3CDS	ENST00000515748	ENST00000255266		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CSNK1A1	chr5	148885010	-	PDE6A	chr5	149264430	-
5CDS-5UTR	ENST00000398073	ENST00000399988		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000398073	ENST00000399989		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000398073	ENST00000399987		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000398073	ENST00000399992		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000398073	ENST00000399985		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000548823	ENST00000399988		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000548823	ENST00000399989		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000548823	ENST00000399987		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000548823	ENST00000399992		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
5CDS-5UTR	ENST00000548823	ENST00000399985		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
intron-5UTR	ENST00000547701	ENST00000399988		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
intron-5UTR	ENST00000547701	ENST00000399989		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
intron-5UTR	ENST00000547701	ENST00000399987		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
intron-5UTR	ENST00000547701	ENST00000399992		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
intron-5UTR	ENST00000547701	ENST00000399985		TCGA	LD	ESCA	TCGA-L5-A43M-01A	CTDSP2	chr12	58240155	-	MAGEB16	chrX	35820248	+
Frame-shit	ENST00000433197	ENST00000323776		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5CDS-intron	ENST00000433197	ENST00000419930		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5CDS-intron	ENST00000433197	ENST00000436259		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5CDS-intron	ENST00000433197	ENST00000468821		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5UTR-3CDS	ENST00000577567	ENST00000323776		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5UTR-intron	ENST00000577567	ENST00000419930		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5UTR-intron	ENST00000577567	ENST00000436259		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
5UTR-intron	ENST00000577567	ENST00000468821		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
intron-3CDS	ENST00000606895	ENST00000323776		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
intron-intron	ENST00000606895	ENST00000419930		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
intron-intron	ENST00000606895	ENST00000436259		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
intron-intron	ENST00000606895	ENST00000468821		TCGA	LD	ESCA	TCGA-L5-A43M-01A	ERN1	chr17	62152535	-	MYCBPAP	chr17	48594654	+
In-frame	ENST00000327044	ENST00000408952		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
In-frame	ENST00000327044	ENST00000400809		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
5CDS-5UTR	ENST00000327044	ENST00000505849		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
5CDS-intron	ENST00000327044	ENST00000408918		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
intron-3CDS	ENST00000487214	ENST00000408952		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
intron-3CDS	ENST00000487214	ENST00000400809		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
intron-5UTR	ENST00000487214	ENST00000505849		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
intron-intron	ENST00000487214	ENST00000408918		TCGA	LD	ESCA	TCGA-L5-A43M-01A	NOC2L	chr1	886507	-	CCNL2	chr1	1325943	-
3UTR-3CDS	ENST00000300289	ENST00000267812		TCGA	LD	ESCA	TCGA-L5-A43M-01A	PDIA3	chr15	44063656	+	MFAP1	chr15	44102073	-
intron-3CDS	ENST00000469684	ENST00000267812		TCGA	LD	ESCA	TCGA-L5-A43M-01A	PDIA3	chr15	44063656	+	MFAP1	chr15	44102073	-
3UTR-3CDS	ENST00000538521	ENST00000267812		TCGA	LD	ESCA	TCGA-L5-A43M-01A	PDIA3	chr15	44063656	+	MFAP1	chr15	44102073	-
Frame-shit	ENST00000603798	ENST00000542120		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000603798	ENST00000229088		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000603798	ENST00000456757		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000603798	ENST00000539867		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000398453	ENST00000542120		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000398453	ENST00000229088		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000398453	ENST00000456757		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000398453	ENST00000539867		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000603864	ENST00000542120		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000603864	ENST00000229088		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000603864	ENST00000456757		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000603864	ENST00000539867		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5UTR-3CDS	ENST00000605627	ENST00000542120		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5UTR-3CDS	ENST00000605627	ENST00000229088		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5UTR-intron	ENST00000605627	ENST00000456757		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5UTR-intron	ENST00000605627	ENST00000539867		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000603838	ENST00000542120		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000603838	ENST00000229088		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000603838	ENST00000456757		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000603838	ENST00000539867		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000604188	ENST00000542120		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
Frame-shit	ENST00000604188	ENST00000229088		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000604188	ENST00000456757		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
5CDS-intron	ENST00000604188	ENST00000539867		TCGA	LD	ESCA	TCGA-L5-A43M-01A	SMAGP	chr12	51663029	-	TBC1D30	chr12	65237160	+
intron-5UTR	ENST00000265343	ENST00000394667		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-5UTR	ENST00000265343	ENST00000502534		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000265343	ENST00000394665		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000265343	ENST00000506397		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000265343	ENST00000394668		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-5UTR	ENST00000378595	ENST00000394667		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-5UTR	ENST00000378595	ENST00000502534		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000378595	ENST00000394665		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000378595	ENST00000506397		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000378595	ENST00000394668		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-5UTR	ENST00000491831	ENST00000394667		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-5UTR	ENST00000491831	ENST00000502534		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000491831	ENST00000394665		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000491831	ENST00000506397		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
intron-intron	ENST00000491831	ENST00000394668		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	AFF4	chr5	132215369	-	RPL34	chr4	109541732	+
Frame-shit	ENST00000380525	ENST00000533594		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000380525	ENST00000526203		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000380525	ENST00000455942		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
Frame-shit	ENST00000397111	ENST00000533594		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000397111	ENST00000526203		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000397111	ENST00000455942		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
Frame-shit	ENST00000278224	ENST00000533594		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000278224	ENST00000526203		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000278224	ENST00000455942		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5UTR-3CDS	ENST00000470221	ENST00000533594		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000470221	ENST00000526203		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000470221	ENST00000455942		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
Frame-shit	ENST00000401769	ENST00000533594		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000401769	ENST00000526203		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000401769	ENST00000455942		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
Frame-shit	ENST00000397114	ENST00000533594		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000397114	ENST00000526203		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
5CDS-5UTR	ENST00000397114	ENST00000455942		TCGA	LD	ESCA	TCGA-L5-A4OF-01A	CARS	chr11	3028109	-	SLC22A18AS	chr11	2909865	-
intron-3CDS	ENST00000528712	ENST00000311922		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
intron-3CDS	ENST00000528712	ENST00000520847		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
intron-intron	ENST00000528712	ENST00000521778		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
intron-5UTR	ENST00000528712	ENST00000519576		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
In-frame	ENST00000335135	ENST00000311922		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
Frame-shit	ENST00000335135	ENST00000520847		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
5CDS-intron	ENST00000335135	ENST00000521778		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
5CDS-5UTR	ENST00000335135	ENST00000519576		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
In-frame	ENST00000532059	ENST00000311922		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
Frame-shit	ENST00000532059	ENST00000520847		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
5CDS-intron	ENST00000532059	ENST00000521778		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
5CDS-5UTR	ENST00000532059	ENST00000519576		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	GATA4	chr8	11566437	+	TRIB1	chr8	126448248	+
5UTR-3CDS	ENST00000307179	ENST00000560955		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000307179	ENST00000313478		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-intron	ENST00000307179	ENST00000561443		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000433963	ENST00000560955		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000433963	ENST00000313478		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-intron	ENST00000433963	ENST00000561443		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000396444	ENST00000560955		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000396444	ENST00000313478		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-intron	ENST00000396444	ENST00000561443		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000425032	ENST00000560955		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-3CDS	ENST00000425032	ENST00000313478		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
5UTR-intron	ENST00000425032	ENST00000561443		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
3UTR-3CDS	ENST00000558892	ENST00000560955		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
3UTR-3CDS	ENST00000558892	ENST00000313478		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
3UTR-intron	ENST00000558892	ENST00000561443		TCGA	LD	ESCA	TCGA-L5-A4OJ-01A	USP8	chr15	50716711	+	TRPM7	chr15	50884823	-
intron-3CDS	ENST00000589203	ENST00000389757		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
intron-3CDS	ENST00000589203	ENST00000389759		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
intron-intron	ENST00000589203	ENST00000495123		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
Frame-shit	ENST00000589498	ENST00000389757		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
In-frame	ENST00000589498	ENST00000389759		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
5CDS-intron	ENST00000589498	ENST00000495123		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
Frame-shit	ENST00000590202	ENST00000389757		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
In-frame	ENST00000590202	ENST00000389759		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
5CDS-intron	ENST00000590202	ENST00000495123		TCGA	LD	ESCA	TCGA-L5-A4OM-01A	ZNF519	chr18	14124349	-	PKP4	chr2	159537000	+
Frame-shit	ENST00000381668	ENST00000319234		TCGA	LD	ESCA	TCGA-L5-A4OO-01A	ATP8A1	chr4	42524177	-	SHISA3	chr4	42403029	+
Frame-shit	ENST00000264449	ENST00000319234		TCGA	LD	ESCA	TCGA-L5-A4OO-01A	ATP8A1	chr4	42524177	-	SHISA3	chr4	42403029	+
intron-3CDS	ENST00000510289	ENST00000319234		TCGA	LD	ESCA	TCGA-L5-A4OO-01A	ATP8A1	chr4	42524177	-	SHISA3	chr4	42403029	+
In-frame	ENST00000409508	ENST00000390239		TCGA	LD	ESCA	TCGA-L5-A4OO-01A	DNAH11	chr7	21778439	+	IGKJ4	chr2	89160433	-
In-frame	ENST00000328843	ENST00000390239		TCGA	LD	ESCA	TCGA-L5-A4OO-01A	DNAH11	chr7	21778439	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000465593	ENST00000390239		TCGA	LD	ESCA	TCGA-L5-A4OO-01A	DNAH11	chr7	21778439	+	IGKJ4	chr2	89160433	-
In-frame	ENST00000353139	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000353139	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000353139	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
In-frame	ENST00000360679	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000360679	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000360679	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
Frame-shit	ENST00000394406	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000394406	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000394406	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
Frame-shit	ENST00000335166	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000335166	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
5CDS-5UTR	ENST00000335166	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-3CDS	ENST00000416895	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000416895	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000416895	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-3CDS	ENST00000361253	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000361253	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000361253	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-3CDS	ENST00000588142	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000588142	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000588142	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-3CDS	ENST00000589665	ENST00000318008		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000589665	ENST00000433206		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000589665	ENST00000435347		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	ACACA	chr17	35536203	-	LASP1	chr17	37034337	+
intron-5UTR	ENST00000409900	ENST00000440016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000409900	ENST00000426965		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000488080	ENST00000440016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000488080	ENST00000426965		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000409156	ENST00000440016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000409156	ENST00000426965		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000295497	ENST00000440016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000295497	ENST00000426965		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000409597	ENST00000440016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
intron-5UTR	ENST00000409597	ENST00000426965		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	CHN1	chr2	175711659	-	HOXD-AS2	chr2	177001727	-
In-frame	ENST00000356083	ENST00000374126		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	COL27A1	chr9	117054490	+	ZNF618	chr9	116731397	+
In-frame	ENST00000356083	ENST00000288466		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	COL27A1	chr9	117054490	+	ZNF618	chr9	116731397	+
5CDS-intron	ENST00000356083	ENST00000470105		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	COL27A1	chr9	117054490	+	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000477421	ENST00000374126		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	COL27A1	chr9	117054490	+	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000477421	ENST00000288466		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	COL27A1	chr9	117054490	+	ZNF618	chr9	116731397	+
intron-intron	ENST00000477421	ENST00000470105		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	COL27A1	chr9	117054490	+	ZNF618	chr9	116731397	+
intron-3UTR	ENST00000586702	ENST00000495140		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	DOCK6	chr19	11323852	-	C3P1	chr19	10184593	+
5CDS-3UTR	ENST00000294618	ENST00000495140		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	DOCK6	chr19	11323852	-	C3P1	chr19	10184593	+
5CDS-3UTR	ENST00000319867	ENST00000495140		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	DOCK6	chr19	11323852	-	C3P1	chr19	10184593	+
In-frame	ENST00000544305	ENST00000404138		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000544305	ENST00000375647		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000544305	ENST00000374651		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374630	ENST00000404138		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374630	ENST00000375647		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374630	ENST00000374651		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000400191	ENST00000404138		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000400191	ENST00000375647		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000400191	ENST00000374651		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374632	ENST00000404138		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374632	ENST00000375647		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374632	ENST00000374651		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374627	ENST00000404138		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374627	ENST00000375647		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
In-frame	ENST00000374627	ENST00000374651		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
intron-3CDS	ENST00000465676	ENST00000404138		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
intron-3CDS	ENST00000465676	ENST00000375647		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
intron-3CDS	ENST00000465676	ENST00000374651		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	EPHB2	chr1	23111569	+	ZBTB40	chr1	22843793	+
intron-3CDS	ENST00000341217	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000341217	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000341217	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000341217	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000341217	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-3CDS	ENST00000581407	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581407	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581407	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581407	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581407	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-3CDS	ENST00000582266	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000582266	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000582266	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000582266	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000582266	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-3CDS	ENST00000452648	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000452648	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000452648	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000452648	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000452648	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-3CDS	ENST00000582059	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000582059	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000582059	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000582059	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000582059	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-3CDS	ENST00000583953	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000583953	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000583953	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000583953	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
intron-5UTR	ENST00000583953	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-3CDS	ENST00000577682	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000577682	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000577682	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000577682	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000577682	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-3CDS	ENST00000583522	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000583522	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000583522	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000583522	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000583522	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-3CDS	ENST00000581381	ENST00000354329		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581381	ENST00000529578		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581381	ENST00000533112		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581381	ENST00000531253		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
5UTR-5UTR	ENST00000581381	ENST00000527372		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27409456	-
3UTR-3CDS	ENST00000490088	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176974086	+	CIR1	chr2	175216453	-
3UTR-3CDS	ENST00000490088	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176974086	+	CIR1	chr2	175216453	-
intron-3CDS	ENST00000249501	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176974086	+	CIR1	chr2	175216453	-
intron-3CDS	ENST00000249501	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176974086	+	CIR1	chr2	175216453	-
intron-intron	ENST00000490088	ENST00000272746		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-intron	ENST00000490088	ENST00000359761		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-intron	ENST00000490088	ENST00000409415		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-intron	ENST00000490088	ENST00000392547		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-5UTR	ENST00000490088	ENST00000392546		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-5UTR	ENST00000490088	ENST00000409891		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-intron	ENST00000490088	ENST00000467149		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
intron-5UTR	ENST00000490088	ENST00000410117		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-intron	ENST00000249501	ENST00000272746		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-intron	ENST00000249501	ENST00000359761		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-intron	ENST00000249501	ENST00000409415		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-intron	ENST00000249501	ENST00000392547		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-5UTR	ENST00000249501	ENST00000392546		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-5UTR	ENST00000249501	ENST00000409891		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-intron	ENST00000249501	ENST00000467149		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-5UTR	ENST00000249501	ENST00000410117		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD10	chr2	176984229	+	WIPF1	chr2	175462396	-
3UTR-3CDS	ENST00000498438	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD11	chr2	176974086	+	CIR1	chr2	175216453	-
3UTR-3CDS	ENST00000498438	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD11	chr2	176974086	+	CIR1	chr2	175216453	-
3UTR-3CDS	ENST00000249504	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD11	chr2	176974086	+	CIR1	chr2	175216453	-
3UTR-3CDS	ENST00000249504	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	HOXD11	chr2	176974086	+	CIR1	chr2	175216453	-
5CDS-5UTR	ENST00000255681	ENST00000394532		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-5UTR	ENST00000255681	ENST00000309032		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-intron	ENST00000255681	ENST00000544785		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-5UTR	ENST00000255681	ENST00000394531		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-5UTR	ENST00000538595	ENST00000394532		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-5UTR	ENST00000538595	ENST00000309032		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-intron	ENST00000538595	ENST00000544785		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-5UTR	ENST00000538595	ENST00000394531		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
In-frame	ENST00000442598	ENST00000372009		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
In-frame	ENST00000442598	ENST00000361297		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
5CDS-intron	ENST00000442598	ENST00000477968		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
In-frame	ENST00000371975	ENST00000372009		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
In-frame	ENST00000371975	ENST00000361297		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
5CDS-intron	ENST00000371975	ENST00000477968		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
intron-3CDS	ENST00000473251	ENST00000372009		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
intron-3CDS	ENST00000473251	ENST00000361297		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
intron-intron	ENST00000473251	ENST00000477968		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RAD54L	chr1	46715791	+	MAST2	chr1	46498268	+
Frame-shit	ENST00000336061	ENST00000331710		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RASSF3	chr12	65004523	+	TBK1	chr12	64873792	+
Frame-shit	ENST00000542104	ENST00000331710		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RASSF3	chr12	65004523	+	TBK1	chr12	64873792	+
3UTR-3CDS	ENST00000540088	ENST00000331710		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	RASSF3	chr12	65004523	+	TBK1	chr12	64873792	+
In-frame	ENST00000458013	ENST00000409426		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000458013	ENST00000441902		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000458013	ENST00000368890		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000458013	ENST00000368888		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
5CDS-intron	ENST00000458013	ENST00000464105		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
5CDS-intron	ENST00000458013	ENST00000414290		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368843	ENST00000409426		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368843	ENST00000441902		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368843	ENST00000368890		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368843	ENST00000368888		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
5CDS-intron	ENST00000368843	ENST00000464105		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
5CDS-intron	ENST00000368843	ENST00000414290		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368838	ENST00000409426		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368838	ENST00000441902		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368838	ENST00000368890		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
In-frame	ENST00000368838	ENST00000368888		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
5CDS-intron	ENST00000368838	ENST00000464105		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
5CDS-intron	ENST00000368838	ENST00000414290		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
intron-3CDS	ENST00000482791	ENST00000409426		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
intron-3CDS	ENST00000482791	ENST00000441902		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
intron-3CDS	ENST00000482791	ENST00000368890		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
intron-3CDS	ENST00000482791	ENST00000368888		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
intron-intron	ENST00000482791	ENST00000464105		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
intron-intron	ENST00000482791	ENST00000414290		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SNX27	chr1	151655921	+	PIP5K1A	chr1	151212431	+
3UTR-3UTR	ENST00000452401	ENST00000398665		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SPPL2B	chr19	2334720	+	DOT1L	chr19	2232302	+
3UTR-intron	ENST00000452401	ENST00000608122		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	SPPL2B	chr19	2334720	+	DOT1L	chr19	2232302	+
5CDS-5UTR	ENST00000300896	ENST00000453134		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000300896	ENST00000583458		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000300896	ENST00000415831		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000300896	ENST00000582043		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000300896	ENST00000580155		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000300896	ENST00000584778		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000300896	ENST00000578887		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000592339	ENST00000453134		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000592339	ENST00000583458		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000592339	ENST00000415831		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-intron	ENST00000592339	ENST00000582043		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000592339	ENST00000580155		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000592339	ENST00000584778		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000592339	ENST00000578887		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000393003	ENST00000453134		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000393003	ENST00000583458		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000393003	ENST00000415831		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000393003	ENST00000582043		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000393003	ENST00000580155		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000393003	ENST00000584778		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000393003	ENST00000578887		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000586881	ENST00000453134		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000586881	ENST00000583458		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000586881	ENST00000415831		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-intron	ENST00000586881	ENST00000582043		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000586881	ENST00000580155		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000586881	ENST00000584778		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
intron-5UTR	ENST00000586881	ENST00000578887		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	USP32	chr17	58422842	-	RBFOX3	chr17	77303906	-
In-frame	ENST00000267199	ENST00000344275		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000442833		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000280560		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000540285		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000346530		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000392439		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000442028		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
In-frame	ENST00000267199	ENST00000542678		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
5CDS-intron	ENST00000267199	ENST00000541983		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000344275		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000442833		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000280560		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000540285		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000346530		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000392439		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000442028		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000542310	ENST00000542678		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-intron	ENST00000542310	ENST00000541983		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000344275		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000442833		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000280560		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000540285		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000346530		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000392439		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000442028		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000451053	ENST00000542678		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-intron	ENST00000451053	ENST00000541983		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	VPS33A	chr12	122734418	-	ABCB9	chr12	123435112	-
intron-3CDS	ENST00000272746	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000272746	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000359761	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000359761	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000409415	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000409415	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000392547	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000392547	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000392546	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000392546	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000409891	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000409891	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000467149	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
intron-3CDS	ENST00000467149	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000410117	ENST00000342016		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
5UTR-3CDS	ENST00000410117	ENST00000362053		TCGA	LD	ESCA	TCGA-L5-A4OQ-01A	WIPF1	chr2	175462329	-	CIR1	chr2	175216453	-
In-frame	ENST00000383472	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000383472	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000383472	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000383472	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000383472	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000383472	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000400091	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000400091	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000400091	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000400091	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000400091	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000400091	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000262227	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000262227	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000262227	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000262227	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000262227	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000262227	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000419673	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000419673	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000419673	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000419673	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000419673	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000419673	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000531294	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000531294	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000531294	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000531294	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000531294	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000531294	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000418986	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000418986	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000418986	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000418986	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000418986	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000418986	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000314319	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000314319	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000314319	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000314319	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000314319	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000314319	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000532996	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000532996	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000532996	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
In-frame	ENST00000532996	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000532996	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
5CDS-intron	ENST00000532996	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	ARHGAP28	chr18	6873774	+	L3MBTL4	chr18	6301956	-
Frame-shit	ENST00000400105	ENST00000361205		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000400105	ENST00000399848		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000400105	ENST00000359446		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400105	ENST00000587757		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400105	ENST00000585931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400105	ENST00000586765		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400105	ENST00000590308		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400105	ENST00000592991		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000317931	ENST00000361205		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000317931	ENST00000399848		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000317931	ENST00000359446		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000317931	ENST00000587757		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000317931	ENST00000585931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000317931	ENST00000586765		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000317931	ENST00000590308		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000317931	ENST00000592991		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000284898	ENST00000361205		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000284898	ENST00000399848		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000284898	ENST00000359446		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000284898	ENST00000587757		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000284898	ENST00000585931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000284898	ENST00000586765		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000284898	ENST00000590308		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000284898	ENST00000592991		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000400104	ENST00000361205		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000400104	ENST00000399848		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
Frame-shit	ENST00000400104	ENST00000359446		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400104	ENST00000587757		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400104	ENST00000585931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400104	ENST00000586765		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400104	ENST00000590308		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
5CDS-intron	ENST00000400104	ENST00000592991		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-3CDS	ENST00000535782	ENST00000361205		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-3CDS	ENST00000535782	ENST00000399848		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-3CDS	ENST00000535782	ENST00000359446		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000535782	ENST00000587757		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000535782	ENST00000585931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000535782	ENST00000586765		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000535782	ENST00000590308		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000535782	ENST00000592991		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-3CDS	ENST00000578677	ENST00000361205		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-3CDS	ENST00000578677	ENST00000399848		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-3CDS	ENST00000578677	ENST00000359446		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000578677	ENST00000587757		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000578677	ENST00000585931		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000578677	ENST00000586765		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000578677	ENST00000590308		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
intron-intron	ENST00000578677	ENST00000592991		TCGA	LD	ESCA	TCGA-L5-A4OR-01A	L3MBTL4	chr18	6301902	-	LDLRAD4	chr18	13438243	+
In-frame	ENST00000412331	ENST00000406386		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
5CDS-intron	ENST00000412331	ENST00000407319		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
5CDS-intron	ENST00000412331	ENST00000403663		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
In-frame	ENST00000381683	ENST00000406386		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
5CDS-intron	ENST00000381683	ENST00000407319		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
5CDS-intron	ENST00000381683	ENST00000403663		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
In-frame	ENST00000406934	ENST00000406386		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
5CDS-intron	ENST00000406934	ENST00000407319		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
5CDS-intron	ENST00000406934	ENST00000403663		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
intron-3CDS	ENST00000476955	ENST00000406386		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
intron-intron	ENST00000476955	ENST00000407319		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
intron-intron	ENST00000476955	ENST00000403663		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38106434	+
intron-3CDS	ENST00000540235	ENST00000319121		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	JUP	chr17	39919235	-	KLHL11	chr17	40011573	-
Frame-shit	ENST00000393930	ENST00000319121		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	JUP	chr17	39919235	-	KLHL11	chr17	40011573	-
Frame-shit	ENST00000393931	ENST00000319121		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	JUP	chr17	39919235	-	KLHL11	chr17	40011573	-
Frame-shit	ENST00000310706	ENST00000319121		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	JUP	chr17	39919235	-	KLHL11	chr17	40011573	-
Frame-shit	ENST00000339554	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000339554	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000371475	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000371475	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000371473	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000371473	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000437259	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000437259	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000392812	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000392812	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000265663	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000265663	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000371474	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000371474	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
In-frame	ENST00000371482	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000371482	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000371472	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000371472	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
Frame-shit	ENST00000541195	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000541195	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5UTR-3CDS	ENST00000484316	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5UTR-intron	ENST00000484316	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
intron-3CDS	ENST00000371468	ENST00000298585		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
intron-intron	ENST00000371468	ENST00000471957		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	NSMF	chr9	140346817	-	ZMYND19	chr9	140477138	-
5CDS-intron	ENST00000251849	ENST00000339137		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000251849	ENST00000376001		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000251849	ENST00000469914		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000442415	ENST00000339137		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000442415	ENST00000376001		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000442415	ENST00000469914		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000534997	ENST00000339137		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000534997	ENST00000376001		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000534997	ENST00000469914		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000542177	ENST00000339137		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000542177	ENST00000376001		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
5CDS-intron	ENST00000542177	ENST00000469914		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	RAF1	chr3	12629090	-	C9orf153	chr9	88850022	-
intron-3CDS	ENST00000298532	ENST00000341511		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	SNAPC4	chr9	139294586	-	ABCA2	chr9	139918688	-
intron-3CDS	ENST00000298532	ENST00000265662		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	SNAPC4	chr9	139294586	-	ABCA2	chr9	139918688	-
intron-3CDS	ENST00000298532	ENST00000371605		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	SNAPC4	chr9	139294586	-	ABCA2	chr9	139918688	-
intron-5UTR	ENST00000298532	ENST00000492260		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	SNAPC4	chr9	139294586	-	ABCA2	chr9	139918688	-
intron-intron	ENST00000556539	ENST00000548241		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
intron-intron	ENST00000556539	ENST00000267116		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5UTR-intron	ENST00000314128	ENST00000548241		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5UTR-intron	ENST00000314128	ENST00000267116		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5UTR-intron	ENST00000557235	ENST00000548241		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5UTR-intron	ENST00000557235	ENST00000267116		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5UTR-intron	ENST00000418572	ENST00000548241		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5UTR-intron	ENST00000418572	ENST00000267116		TCGA	LD	ESCA	TCGA-L5-A4OS-01A	STAT2	chr12	56753842	-	ANKRD52	chr12	56642654	-
5CDS-5UTR	ENST00000550735	ENST00000412615		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
5CDS-5UTR	ENST00000550735	ENST00000257604		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
5CDS-5UTR	ENST00000551404	ENST00000412615		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
5CDS-5UTR	ENST00000551404	ENST00000257604		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
intron-5UTR	ENST00000547305	ENST00000412615		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
intron-5UTR	ENST00000547305	ENST00000257604		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
intron-5UTR	ENST00000546394	ENST00000412615		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
intron-5UTR	ENST00000546394	ENST00000257604		TCGA	LD	ESCA	TCGA-L5-A4OT-01A	MAPKAPK5	chr12	112308984	+	TRAFD1	chr12	112568315	+
Frame-shit	ENST00000406875	ENST00000436336		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
Frame-shit	ENST00000406875	ENST00000451876		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
Frame-shit	ENST00000406875	ENST00000292476		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
5CDS-5UTR	ENST00000406875	ENST00000441580		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
5CDS-intron	ENST00000406875	ENST00000471455		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
Frame-shit	ENST00000428878	ENST00000436336		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
Frame-shit	ENST00000428878	ENST00000451876		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
Frame-shit	ENST00000428878	ENST00000292476		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
5CDS-5UTR	ENST00000428878	ENST00000441580		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
5CDS-intron	ENST00000428878	ENST00000471455		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
intron-3CDS	ENST00000342645	ENST00000436336		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
intron-3CDS	ENST00000342645	ENST00000451876		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
intron-3CDS	ENST00000342645	ENST00000292476		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
intron-5UTR	ENST00000342645	ENST00000441580		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
intron-intron	ENST00000342645	ENST00000471455		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	HIPK2	chr7	139477404	-	CPSF4	chr7	99042412	+
intron-5UTR	ENST00000405088	ENST00000401903		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
intron-5UTR	ENST00000405088	ENST00000316495		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
intron-intron	ENST00000405088	ENST00000478137		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
intron-5UTR	ENST00000471899	ENST00000401903		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
intron-5UTR	ENST00000471899	ENST00000316495		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
intron-intron	ENST00000471899	ENST00000478137		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
5CDS-5UTR	ENST00000297508	ENST00000401903		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
5CDS-5UTR	ENST00000297508	ENST00000316495		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
5CDS-intron	ENST00000297508	ENST00000478137		TCGA	LD	ESCA	TCGA-L5-A4OU-01A	MICALL2	chr7	1498820	-	ZFAND2A	chr7	1197893	-
Frame-shit	ENST00000225428	ENST00000283415		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	CWC25	chr17	36962550	-	LPCAT1	chr5	1489973	-
5CDS-intron	ENST00000225428	ENST00000503252		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	CWC25	chr17	36962550	-	LPCAT1	chr5	1489973	-
Frame-shit	ENST00000536127	ENST00000283415		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	CWC25	chr17	36962550	-	LPCAT1	chr5	1489973	-
5CDS-intron	ENST00000536127	ENST00000503252		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	CWC25	chr17	36962550	-	LPCAT1	chr5	1489973	-
Frame-shit	ENST00000583610	ENST00000430627		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
Frame-shit	ENST00000583610	ENST00000447079		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
5CDS-intron	ENST00000583610	ENST00000559545		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
Frame-shit	ENST00000394294	ENST00000430627		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
Frame-shit	ENST00000394294	ENST00000447079		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
5CDS-intron	ENST00000394294	ENST00000559545		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
Frame-shit	ENST00000264658	ENST00000430627		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
Frame-shit	ENST00000264658	ENST00000447079		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
5CDS-intron	ENST00000264658	ENST00000559545		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
intron-3CDS	ENST00000577399	ENST00000430627		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
intron-3CDS	ENST00000577399	ENST00000447079		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
intron-intron	ENST00000577399	ENST00000559545		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	FBXL20	chr17	37557614	-	CDK12	chr17	37657503	+
In-frame	ENST00000540235	ENST00000433608		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
In-frame	ENST00000540235	ENST00000393382		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
5CDS-intron	ENST00000540235	ENST00000470462		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
In-frame	ENST00000393930	ENST00000433608		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
In-frame	ENST00000393930	ENST00000393382		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
5CDS-intron	ENST00000393930	ENST00000470462		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
Frame-shit	ENST00000393931	ENST00000433608		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
Frame-shit	ENST00000393931	ENST00000393382		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
5CDS-intron	ENST00000393931	ENST00000470462		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
In-frame	ENST00000310706	ENST00000433608		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
In-frame	ENST00000310706	ENST00000393382		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
5CDS-intron	ENST00000310706	ENST00000470462		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	JUP	chr17	39925221	-	TTLL6	chr17	46865361	-
5UTR-5UTR	ENST00000574590	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
intron-5UTR	ENST00000575318	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
intron-5UTR	ENST00000572904	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
intron-5UTR	ENST00000262419	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
intron-5UTR	ENST00000432791	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
intron-5UTR	ENST00000393476	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
intron-5UTR	ENST00000576248	ENST00000329402		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KANSL1	chr17	44301037	-	GAST	chr17	39871684	+
In-frame	ENST00000394507	ENST00000265734		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
In-frame	ENST00000394507	ENST00000424848		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
5CDS-intron	ENST00000394507	ENST00000491250		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
Frame-shit	ENST00000340022	ENST00000265734		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
Frame-shit	ENST00000340022	ENST00000424848		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
5CDS-intron	ENST00000340022	ENST00000491250		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
Frame-shit	ENST00000412043	ENST00000265734		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
Frame-shit	ENST00000412043	ENST00000424848		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
5CDS-intron	ENST00000412043	ENST00000491250		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
Frame-shit	ENST00000394505	ENST00000265734		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
Frame-shit	ENST00000394505	ENST00000424848		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
5CDS-intron	ENST00000394505	ENST00000491250		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
In-frame	ENST00000394503	ENST00000265734		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
In-frame	ENST00000394503	ENST00000424848		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
5CDS-intron	ENST00000394503	ENST00000491250		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
intron-3CDS	ENST00000466166	ENST00000265734		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
intron-3CDS	ENST00000466166	ENST00000424848		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
intron-intron	ENST00000466166	ENST00000491250		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	KRIT1	chr7	91871348	-	CDK6	chr7	92247521	-
5UTR-5UTR	ENST00000541730	ENST00000309983		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	MBOAT1	chr6	20212367	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000324607	ENST00000309983		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	MBOAT1	chr6	20212367	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000536798	ENST00000309983		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	MBOAT1	chr6	20212367	-	TPMT	chr6	18149402	-
Frame-shit	ENST00000309983	ENST00000314100		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	TPMT	chr6	18149219	-	BTBD9	chr6	38312869	-
Frame-shit	ENST00000309983	ENST00000481247		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	TPMT	chr6	18149219	-	BTBD9	chr6	38312869	-
Frame-shit	ENST00000309983	ENST00000419706		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	TPMT	chr6	18149219	-	BTBD9	chr6	38312869	-
Frame-shit	ENST00000309983	ENST00000408958		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	TPMT	chr6	18149219	-	BTBD9	chr6	38312869	-
Frame-shit	ENST00000309983	ENST00000403056		TCGA	LD	ESCA	TCGA-L5-A4OW-01A	TPMT	chr6	18149219	-	BTBD9	chr6	38312869	-
3UTR-intron	ENST00000462274	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
3UTR-intron	ENST00000462274	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
3UTR-intron	ENST00000462274	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
3UTR-intron	ENST00000462274	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
3UTR-intron	ENST00000462274	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
3UTR-intron	ENST00000462274	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
5UTR-intron	ENST00000338785	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
5UTR-intron	ENST00000338785	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
5UTR-intron	ENST00000338785	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
5UTR-intron	ENST00000338785	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
5UTR-intron	ENST00000338785	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
5UTR-intron	ENST00000338785	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000451934	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000451934	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000451934	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000451934	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000451934	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000451934	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000321219	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000321219	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000321219	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000321219	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000321219	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000321219	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000339659	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000339659	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000339659	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000339659	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000339659	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000339659	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398960	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398960	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398960	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398960	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398960	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398960	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398956	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398956	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398956	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398956	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398956	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000398956	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000455387	ENST00000518347		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000455387	ENST00000424248		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000455387	ENST00000262585		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000455387	ENST00000519811		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000455387	ENST00000518806		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
intron-intron	ENST00000455387	ENST00000523308		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	DYRK1A	chr21	38739930	+	DENND3	chr8	142185299	+
Frame-shit	ENST00000398081	ENST00000285407		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000398081	ENST00000395884		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000468090	ENST00000285407		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000468090	ENST00000395884		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000291565	ENST00000285407		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000291565	ENST00000395884		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000327574	ENST00000285407		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
Frame-shit	ENST00000327574	ENST00000395884		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
3UTR-3CDS	ENST00000476313	ENST00000285407		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
3UTR-3CDS	ENST00000476313	ENST00000395884		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
intron-3CDS	ENST00000467908	ENST00000285407		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
intron-3CDS	ENST00000467908	ENST00000395884		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	PDXK	chr21	45154004	+	KLF10	chr8	103664625	-
5UTR-3UTR	ENST00000293328	ENST00000540900		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	STAT5B	chr17	40428266	-	NSRP1	chr17	28499560	+
5UTR-intron	ENST00000293328	ENST00000584423		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	STAT5B	chr17	40428266	-	NSRP1	chr17	28499560	+
5UTR-intron	ENST00000293328	ENST00000247026		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	STAT5B	chr17	40428266	-	NSRP1	chr17	28499560	+
5UTR-intron	ENST00000293328	ENST00000479218		TCGA	LD	ESCA	TCGA-L5-A4OX-01A	STAT5B	chr17	40428266	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000430627	ENST00000302584		TCGA	LD	ESCA	TCGA-L5-A88V-01A	CDK12	chr17	37649143	+	NEUROD2	chr17	37764318	-
5CDS-intron	ENST00000447079	ENST00000302584		TCGA	LD	ESCA	TCGA-L5-A88V-01A	CDK12	chr17	37649143	+	NEUROD2	chr17	37764318	-
intron-intron	ENST00000559545	ENST00000302584		TCGA	LD	ESCA	TCGA-L5-A88V-01A	CDK12	chr17	37649143	+	NEUROD2	chr17	37764318	-
In-frame	ENST00000309156	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000309156	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
In-frame	ENST00000309185	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000309185	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
In-frame	ENST00000394211	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000394211	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
3UTR-3CDS	ENST00000578702	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
3UTR-intron	ENST00000578702	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
In-frame	ENST00000445327	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000445327	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
In-frame	ENST00000394209	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000394209	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
In-frame	ENST00000394204	ENST00000269554		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5CDS-intron	ENST00000394204	ENST00000311500		TCGA	LD	ESCA	TCGA-L5-A88V-01A	GRB7	chr17	37898969	+	PIP4K2B	chr17	36927525	-
5UTR-3CDS	ENST00000336308	ENST00000583610		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000336308	ENST00000394294		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000336308	ENST00000264658		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000336308	ENST00000577399		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
3UTR-3CDS	ENST00000578232	ENST00000583610		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
3UTR-3CDS	ENST00000578232	ENST00000394294		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
3UTR-3CDS	ENST00000578232	ENST00000264658		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
3UTR-3CDS	ENST00000578232	ENST00000577399		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000544210	ENST00000583610		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000544210	ENST00000394294		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000544210	ENST00000264658		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000544210	ENST00000577399		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000394250	ENST00000583610		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000394250	ENST00000394294		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000394250	ENST00000264658		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000394250	ENST00000577399		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000580611	ENST00000583610		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000580611	ENST00000394294		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000580611	ENST00000264658		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5UTR-3CDS	ENST00000580611	ENST00000577399		TCGA	LD	ESCA	TCGA-L5-A88V-01A	STARD3	chr17	37793484	+	FBXL20	chr17	37459892	-
5CDS-intron	ENST00000318999	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000318999	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000318999	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000376478	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376478	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000376485	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376485	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000319027	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000319027	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000376483	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000376483	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000329992	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000329992	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-5UTR	ENST00000330083	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5CDS-intron	ENST00000330083	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-5UTR	ENST00000468713	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
3UTR-intron	ENST00000468713	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000423338	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423338	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000553093	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553093	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000445486	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445486	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000424121	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000424121	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000457161	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457161	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000450003	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450003	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000425448	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000425448	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000489189	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000489189	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000443114	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443114	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000553018	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000553018	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000454794	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454794	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000443391	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000443391	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000446100	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000446100	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000456704	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456704	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000448670	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000448670	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000481303	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000481303	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000417183	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000417183	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000546440	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000546440	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000420586	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000420586	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000445973	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000445973	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000418248	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000418248	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000450220	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000450220	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000432643	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432643	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000490845	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000490845	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000383584	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383584	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000551737	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000551737	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000383585	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383585	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000400576	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400576	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000400575	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000400575	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000383582	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000383582	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000479580	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000479580	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000449905	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000449905	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000547124	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000547124	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000442844	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000442844	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000430611	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000430611	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000423654	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000423654	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000428764	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000428764	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000416435	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416435	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000472552	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000472552	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000416917	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000416917	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000550031	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000550031	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000432356	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000432356	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000454987	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000454987	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000411724	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000411724	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000456215	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000456215	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000457334	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000457334	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000488324		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000399199		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-5UTR	ENST00000477838	ENST00000274853		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000498031		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000444206		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000438815		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000552716		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000491628		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000435929		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000412189		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000548255		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000493833		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000438945		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000455935		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000551049		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000472334		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000451544		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000437121		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000551034		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000465704		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000383573		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000400554		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000550073		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000492746		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000449705		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000443517		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000551784		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000487859		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
intron-intron	ENST00000477838	ENST00000435006		TCGA	LD	ESCA	TCGA-L5-A88Y-01A	ATAT1	chr6	30596207	+	PPP1R18	chr6	30654352	-
5UTR-3CDS	ENST00000520753	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520753	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520753	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520753	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520753	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520753	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520753	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000521613	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519940	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000519332	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
5UTR-3CDS	ENST00000520007	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000600800	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000357778	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000391898	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000359009	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000447740	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520153	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000520015	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000598205		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000376970		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000425460		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000440075		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000601313		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000262269		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000522431	ENST00000596571		TCGA	LD	ESCA	TCGA-L5-A891-01A	CARD8	chr19	48759049	-	MYH14	chr19	50752244	+
intron-3CDS	ENST00000254322	ENST00000252826		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-3CDS	ENST00000254322	ENST00000427978		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-3CDS	ENST00000254322	ENST00000355712		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-intron	ENST00000254322	ENST00000601347		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-3CDS	ENST00000396969	ENST00000252826		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-3CDS	ENST00000396969	ENST00000427978		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-3CDS	ENST00000396969	ENST00000355712		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
intron-intron	ENST00000396969	ENST00000601347		TCGA	LD	ESCA	TCGA-L5-A891-01A	DNAJB1	chr19	14638499	-	TRPM4	chr19	49703557	+
5CDS-intron	ENST00000270530	ENST00000588552		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000262963		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000372412		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000348075		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000357368		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000353284		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000587303		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000588012		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000592099		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000270530	ENST00000590509		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000588552		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000262963		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000372412		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000348075		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000357368		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000353284		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000587303		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000588012		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000592099		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5CDS-intron	ENST00000538904	ENST00000590509		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000588552		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000262963		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000372412		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000348075		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000357368		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000353284		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000587303		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000588012		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000592099		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
intron-intron	ENST00000600802	ENST00000590509		TCGA	LD	ESCA	TCGA-L5-A891-01A	EVI5L	chr19	7915008	+	PTPRS	chr19	5225855	-
5UTR-3UTR	ENST00000317683	ENST00000474284		TCGA	LD	ESCA	TCGA-L5-A891-01A	FBXO46	chr19	46234107	-	ZNF90	chr19	20216030	+
5UTR-3UTR	ENST00000317683	ENST00000418063		TCGA	LD	ESCA	TCGA-L5-A891-01A	FBXO46	chr19	46234107	-	ZNF90	chr19	20216030	+
5CDS-intron	ENST00000290573	ENST00000590933		TCGA	LD	ESCA	TCGA-L5-A891-01A	HK2	chr2	75101576	+	ZNF121	chr19	9679758	-
5CDS-5UTR	ENST00000290573	ENST00000586602		TCGA	LD	ESCA	TCGA-L5-A891-01A	HK2	chr2	75101576	+	ZNF121	chr19	9679758	-
5CDS-5UTR	ENST00000290573	ENST00000320451		TCGA	LD	ESCA	TCGA-L5-A891-01A	HK2	chr2	75101576	+	ZNF121	chr19	9679758	-
5CDS-intron	ENST00000409174	ENST00000590933		TCGA	LD	ESCA	TCGA-L5-A891-01A	HK2	chr2	75101576	+	ZNF121	chr19	9679758	-
5CDS-5UTR	ENST00000409174	ENST00000586602		TCGA	LD	ESCA	TCGA-L5-A891-01A	HK2	chr2	75101576	+	ZNF121	chr19	9679758	-
5CDS-5UTR	ENST00000409174	ENST00000320451		TCGA	LD	ESCA	TCGA-L5-A891-01A	HK2	chr2	75101576	+	ZNF121	chr19	9679758	-
Frame-shit	ENST00000377126	ENST00000397224		TCGA	LD	ESCA	TCGA-L5-A891-01A	KLF9	chr9	73027775	-	FOXRED2	chr22	36889850	-
Frame-shit	ENST00000377126	ENST00000216187		TCGA	LD	ESCA	TCGA-L5-A891-01A	KLF9	chr9	73027775	-	FOXRED2	chr22	36889850	-
Frame-shit	ENST00000377126	ENST00000366463		TCGA	LD	ESCA	TCGA-L5-A891-01A	KLF9	chr9	73027775	-	FOXRED2	chr22	36889850	-
Frame-shit	ENST00000377126	ENST00000397223		TCGA	LD	ESCA	TCGA-L5-A891-01A	KLF9	chr9	73027775	-	FOXRED2	chr22	36889850	-
intron-intron	ENST00000492698	ENST00000309950		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
intron-intron	ENST00000492698	ENST00000409042		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
5CDS-intron	ENST00000252999	ENST00000309950		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
5CDS-intron	ENST00000252999	ENST00000409042		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
5CDS-intron	ENST00000370692	ENST00000309950		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
5CDS-intron	ENST00000370692	ENST00000409042		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
5CDS-intron	ENST00000370677	ENST00000309950		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
5CDS-intron	ENST00000370677	ENST00000409042		TCGA	LD	ESCA	TCGA-L5-A891-01A	LAMA5	chr20	60926760	-	DAPL1	chr2	159718918	+
Frame-shit	ENST00000284719	ENST00000392552		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
Frame-shit	ENST00000284719	ENST00000392551		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
Frame-shit	ENST00000284719	ENST00000295500		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5CDS-intron	ENST00000284719	ENST00000459996		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5UTR-3CDS	ENST00000344357	ENST00000392552		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5UTR-3CDS	ENST00000344357	ENST00000392551		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5UTR-3CDS	ENST00000344357	ENST00000295500		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5UTR-intron	ENST00000344357	ENST00000459996		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
Frame-shit	ENST00000428402	ENST00000392552		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
Frame-shit	ENST00000428402	ENST00000392551		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
Frame-shit	ENST00000428402	ENST00000295500		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5CDS-intron	ENST00000428402	ENST00000459996		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
In-frame	ENST00000409546	ENST00000392552		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
In-frame	ENST00000409546	ENST00000392551		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
In-frame	ENST00000409546	ENST00000295500		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5CDS-intron	ENST00000409546	ENST00000459996		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
intron-3CDS	ENST00000392560	ENST00000392552		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
intron-3CDS	ENST00000392560	ENST00000392551		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
intron-3CDS	ENST00000392560	ENST00000295500		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
intron-intron	ENST00000392560	ENST00000459996		TCGA	LD	ESCA	TCGA-L5-A891-01A	OLA1	chr2	175087761	-	GPR155	chr2	175326400	-
5CDS-intron	ENST00000328195	ENST00000506177		TCGA	LD	ESCA	TCGA-L5-A891-01A	PROSC	chr8	37633534	+	TTLL10	chr1	1114569	+
5CDS-5UTR	ENST00000328195	ENST00000379290		TCGA	LD	ESCA	TCGA-L5-A891-01A	PROSC	chr8	37633534	+	TTLL10	chr1	1114569	+
5CDS-5UTR	ENST00000328195	ENST00000379289		TCGA	LD	ESCA	TCGA-L5-A891-01A	PROSC	chr8	37633534	+	TTLL10	chr1	1114569	+
5CDS-intron	ENST00000328195	ENST00000379288		TCGA	LD	ESCA	TCGA-L5-A891-01A	PROSC	chr8	37633534	+	TTLL10	chr1	1114569	+
In-frame	ENST00000361574	ENST00000458235		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
In-frame	ENST00000361574	ENST00000534444		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
5CDS-5UTR	ENST00000361574	ENST00000526008		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
5CDS-5UTR	ENST00000361574	ENST00000527670		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
In-frame	ENST00000587975	ENST00000458235		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
In-frame	ENST00000587975	ENST00000534444		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
5CDS-5UTR	ENST00000587975	ENST00000526008		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
5CDS-5UTR	ENST00000587975	ENST00000527670		TCGA	LD	ESCA	TCGA-L5-A891-01A	R3HDM4	chr19	913087	-	JAK3	chr19	17953981	-
5CDS-5UTR	ENST00000599117	ENST00000587340		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000599117	ENST00000254165		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000599117	ENST00000587492		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000599117	ENST00000391713		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000599117	ENST00000592355		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000599117	ENST00000591078		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000432763	ENST00000587340		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000432763	ENST00000254165		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000432763	ENST00000587492		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000432763	ENST00000391713		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000432763	ENST00000592355		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000432763	ENST00000591078		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000402194	ENST00000587340		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000402194	ENST00000254165		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000402194	ENST00000587492		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000402194	ENST00000391713		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000402194	ENST00000592355		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000402194	ENST00000591078		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000359191	ENST00000587340		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000359191	ENST00000254165		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000359191	ENST00000587492		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000359191	ENST00000391713		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000359191	ENST00000592355		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000359191	ENST00000591078		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000598725	ENST00000587340		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000598725	ENST00000254165		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000598725	ENST00000587492		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000598725	ENST00000391713		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-5UTR	ENST00000598725	ENST00000592355		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5CDS-intron	ENST00000598725	ENST00000591078		TCGA	LD	ESCA	TCGA-L5-A891-01A	SUPT5H	chr19	39966953	+	ZSCAN5A	chr19	56736417	-
5UTR-3CDS	ENST00000398505	ENST00000291527		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZBTB21	chr21	43430361	-	TFF1	chr21	43783516	-
5UTR-3CDS	ENST00000310826	ENST00000291527		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZBTB21	chr21	43430361	-	TFF1	chr21	43783516	-
5UTR-3CDS	ENST00000398499	ENST00000291527		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZBTB21	chr21	43430361	-	TFF1	chr21	43783516	-
5UTR-3CDS	ENST00000398511	ENST00000291527		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZBTB21	chr21	43430361	-	TFF1	chr21	43783516	-
5UTR-3CDS	ENST00000465968	ENST00000291527		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZBTB21	chr21	43430361	-	TFF1	chr21	43783516	-
5CDS-5UTR	ENST00000312026	ENST00000222032		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF417	chr19	58427747	-	CNFN	chr19	42893191	-
5CDS-5UTR	ENST00000312026	ENST00000597255		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF417	chr19	58427747	-	CNFN	chr19	42893191	-
5UTR-5UTR	ENST00000536263	ENST00000222032		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF417	chr19	58427747	-	CNFN	chr19	42893191	-
5UTR-5UTR	ENST00000536263	ENST00000597255		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF417	chr19	58427747	-	CNFN	chr19	42893191	-
5CDS-5UTR	ENST00000595559	ENST00000222032		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF417	chr19	58427747	-	CNFN	chr19	42893191	-
5CDS-5UTR	ENST00000595559	ENST00000597255		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF417	chr19	58427747	-	CNFN	chr19	42893191	-
In-frame	ENST00000391901	ENST00000328759		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
5CDS-intron	ENST00000391901	ENST00000593921		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
In-frame	ENST00000314121	ENST00000328759		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
5CDS-intron	ENST00000314121	ENST00000593921		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
In-frame	ENST00000448976	ENST00000328759		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
5CDS-intron	ENST00000448976	ENST00000593921		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
intron-3CDS	ENST00000487275	ENST00000328759		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
intron-intron	ENST00000487275	ENST00000593921		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF541	chr19	48047383	-	C19orf68	chr19	48697910	+
intron-intron	ENST00000356322	ENST00000543307		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000356322	ENST00000392219		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000356322	ENST00000541435		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000356322	ENST00000590686		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000356322	ENST00000342879		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000356322	ENST00000588699		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000356322	ENST00000423817		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000356322	ENST00000392218		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000356322	ENST00000591716		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000356322	ENST00000392217		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000270649	ENST00000543307		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000270649	ENST00000392219		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000270649	ENST00000541435		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000270649	ENST00000590686		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000270649	ENST00000342879		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000270649	ENST00000588699		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000270649	ENST00000423817		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-intron	ENST00000270649	ENST00000392218		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000270649	ENST00000591716		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3UTR	ENST00000270649	ENST00000392217		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF614	chr19	52518896	-	FXYD5	chr19	35660469	+
intron-3CDS	ENST00000356725	ENST00000361664		TCGA	LD	ESCA	TCGA-L5-A891-01A	ZNF790	chr19	37340904	-	C19orf45	chr19	7570210	+
5CDS-5UTR	ENST00000324856	ENST00000319394		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
5CDS-5UTR	ENST00000324856	ENST00000361771		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
5CDS-5UTR	ENST00000457599	ENST00000319394		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
5CDS-5UTR	ENST00000457599	ENST00000361771		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
intron-5UTR	ENST00000374152	ENST00000319394		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
intron-5UTR	ENST00000374152	ENST00000361771		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
intron-5UTR	ENST00000540690	ENST00000319394		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
intron-5UTR	ENST00000540690	ENST00000361771		TCGA	LD	ESCA	TCGA-L5-A893-01A	ARID1A	chr1	27024031	+	WDTC1	chr1	27587447	+
In-frame	ENST00000545314	ENST00000371429		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000545314	ENST00000540001		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000545314	ENST00000537333		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000545314	ENST00000234725		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000545314	ENST00000480952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
3UTR-3CDS	ENST00000470888	ENST00000371429		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
3UTR-3CDS	ENST00000470888	ENST00000540001		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
3UTR-5UTR	ENST00000470888	ENST00000537333		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
3UTR-5UTR	ENST00000470888	ENST00000234725		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
3UTR-5UTR	ENST00000470888	ENST00000480952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000546702	ENST00000371429		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000546702	ENST00000540001		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000546702	ENST00000537333		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000546702	ENST00000234725		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000546702	ENST00000480952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000395334	ENST00000371429		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000395334	ENST00000540001		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000395334	ENST00000537333		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000395334	ENST00000234725		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000395334	ENST00000480952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000327299	ENST00000371429		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
In-frame	ENST00000327299	ENST00000540001		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000327299	ENST00000537333		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000327299	ENST00000234725		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5CDS-5UTR	ENST00000327299	ENST00000480952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	AK4	chr1	65656512	+	NDC1	chr1	54293846	-
5UTR-3CDS	ENST00000556508	ENST00000538789		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000556508	ENST00000481602		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000556508	ENST00000374298		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-3CDS	ENST00000453495	ENST00000538789		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000453495	ENST00000481602		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000453495	ENST00000374298		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-3CDS	ENST00000414716	ENST00000538789		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000414716	ENST00000481602		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000414716	ENST00000374298		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-3CDS	ENST00000418279	ENST00000538789		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000418279	ENST00000481602		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
5UTR-intron	ENST00000418279	ENST00000374298		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	CEP170B	chr14	105331850	+	AUNIP	chr1	26164045	-
intron-intron	ENST00000378891	ENST00000408952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-intron	ENST00000378891	ENST00000400809		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-5UTR	ENST00000378891	ENST00000505849		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-intron	ENST00000378891	ENST00000408918		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-intron	ENST00000378888	ENST00000408952		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-intron	ENST00000378888	ENST00000400809		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-5UTR	ENST00000378888	ENST00000505849		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-intron	ENST00000378888	ENST00000408918		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	DVL1	chr1	1271000	-	CCNL2	chr1	1323890	-
intron-3CDS	ENST00000325285	ENST00000355097		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	FBXW5	chr9	139835795	-	ENTPD2	chr9	139946800	-
intron-intron	ENST00000325285	ENST00000460614		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	FBXW5	chr9	139835795	-	ENTPD2	chr9	139946800	-
intron-intron	ENST00000325285	ENST00000312665		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	FBXW5	chr9	139835795	-	ENTPD2	chr9	139946800	-
intron-3CDS	ENST00000483559	ENST00000355097		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	FBXW5	chr9	139835795	-	ENTPD2	chr9	139946800	-
intron-intron	ENST00000483559	ENST00000460614		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	FBXW5	chr9	139835795	-	ENTPD2	chr9	139946800	-
intron-intron	ENST00000483559	ENST00000312665		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	FBXW5	chr9	139835795	-	ENTPD2	chr9	139946800	-
intron-3UTR	ENST00000422163	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
intron-3UTR	ENST00000491100	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
5CDS-3UTR	ENST00000313601	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
5UTR-3UTR	ENST00000536647	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
intron-3UTR	ENST00000440628	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
intron-3UTR	ENST00000451956	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
intron-3UTR	ENST00000266027	ENST00000420502		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	GNAI2	chr3	50273885	+	SLC38A3	chr3	50251582	+
5CDS-5UTR	ENST00000308354	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000308354	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000308354	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000308354	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000397760	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000397760	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000397760	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000397760	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-5UTR	ENST00000339162	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-5UTR	ENST00000339162	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-intron	ENST00000339162	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-intron	ENST00000339162	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000397761	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000397761	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000397761	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000397761	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-5UTR	ENST00000409141	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-5UTR	ENST00000409141	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-intron	ENST00000409141	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
intron-intron	ENST00000409141	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000265810	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000265810	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000265810	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000265810	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000409417	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000409417	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000409417	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-intron	ENST00000409417	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
3UTR-5UTR	ENST00000448520	ENST00000240123		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
3UTR-5UTR	ENST00000448520	ENST00000523402		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
3UTR-intron	ENST00000448520	ENST00000523740		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
3UTR-intron	ENST00000448520	ENST00000428103		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PDLIM2	chr8	22449181	+	SORBS3	chr8	22411965	+
5CDS-5UTR	ENST00000531066	ENST00000370367		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	KHDC3L	chr6	74072440	+
5CDS-5UTR	ENST00000355661	ENST00000370367		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	KHDC3L	chr6	74072440	+
5CDS-5UTR	ENST00000448080	ENST00000370367		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	KHDC3L	chr6	74072440	+
intron-5UTR	ENST00000532079	ENST00000370367		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	KHDC3L	chr6	74072440	+
intron-5UTR	ENST00000332954	ENST00000370367		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PLEKHA7	chr11	17035536	-	KHDC3L	chr6	74072440	+
5CDS-3UTR	ENST00000396504	ENST00000326734		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	POLR3H	chr22	41936703	-	FAM87B	chr1	754103	+
5CDS-3UTR	ENST00000355209	ENST00000326734		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	POLR3H	chr22	41936703	-	FAM87B	chr1	754103	+
5CDS-3UTR	ENST00000337566	ENST00000326734		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	POLR3H	chr22	41936703	-	FAM87B	chr1	754103	+
5CDS-3UTR	ENST00000407461	ENST00000326734		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	POLR3H	chr22	41936703	-	FAM87B	chr1	754103	+
intron-3UTR	ENST00000420561	ENST00000326734		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	POLR3H	chr22	41936703	-	FAM87B	chr1	754103	+
In-frame	ENST00000253925	ENST00000340360		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
In-frame	ENST00000253925	ENST00000321448		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
In-frame	ENST00000253925	ENST00000527087		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000253925	ENST00000533598		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
In-frame	ENST00000389547	ENST00000340360		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
In-frame	ENST00000389547	ENST00000321448		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
In-frame	ENST00000389547	ENST00000527087		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000389547	ENST00000533598		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000530548	ENST00000340360		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000530548	ENST00000321448		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000530548	ENST00000527087		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
intron-intron	ENST00000530548	ENST00000533598		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	PPFIA1	chr11	70118542	+	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000399799	ENST00000320477		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ROCK1	chr18	18691436	-	CIDEA	chr18	12262824	+
intron-3UTR	ENST00000399799	ENST00000521296		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ROCK1	chr18	18691436	-	CIDEA	chr18	12262824	+
In-frame	ENST00000430379	ENST00000420764		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000430379	ENST00000358747		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000430379	ENST00000395550		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000430379	ENST00000383733		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000430379	ENST00000337000		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000430379	ENST00000455886		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5CDS-intron	ENST00000430379	ENST00000482282		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000319017	ENST00000420764		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000319017	ENST00000358747		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000319017	ENST00000395550		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000319017	ENST00000383733		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000319017	ENST00000337000		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
In-frame	ENST00000319017	ENST00000455886		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5CDS-intron	ENST00000319017	ENST00000482282		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000544097	ENST00000420764		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000544097	ENST00000358747		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000544097	ENST00000395550		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000544097	ENST00000383733		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000544097	ENST00000337000		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000544097	ENST00000455886		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-intron	ENST00000544097	ENST00000482282		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SLC25A20	chr3	48936123	-	SLC26A6	chr3	48664118	-
5UTR-3CDS	ENST00000566339	ENST00000301729		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SPSB3	chr16	1832503	-	ECI1	chr16	2293225	-
5UTR-3CDS	ENST00000566339	ENST00000562238		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SPSB3	chr16	1832503	-	ECI1	chr16	2293225	-
5UTR-3CDS	ENST00000566339	ENST00000570258		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SPSB3	chr16	1832503	-	ECI1	chr16	2293225	-
intron-3CDS	ENST00000301717	ENST00000301729		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SPSB3	chr16	1832503	-	ECI1	chr16	2293225	-
intron-3CDS	ENST00000301717	ENST00000562238		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SPSB3	chr16	1832503	-	ECI1	chr16	2293225	-
intron-3CDS	ENST00000301717	ENST00000570258		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	SPSB3	chr16	1832503	-	ECI1	chr16	2293225	-
Frame-shit	ENST00000433529	ENST00000272348		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000433529	ENST00000429728		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000433529	ENST00000482975		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000433529	ENST00000438261		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000433529	ENST00000449935		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000433529	ENST00000413456		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000433529	ENST00000454893		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
Frame-shit	ENST00000415783	ENST00000272348		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000415783	ENST00000429728		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000415783	ENST00000482975		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000415783	ENST00000438261		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000415783	ENST00000449935		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000415783	ENST00000413456		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000415783	ENST00000454893		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
Frame-shit	ENST00000282574	ENST00000272348		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000282574	ENST00000429728		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000282574	ENST00000482975		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000282574	ENST00000438261		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000282574	ENST00000449935		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000282574	ENST00000413456		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000282574	ENST00000454893		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
Frame-shit	ENST00000445587	ENST00000272348		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000445587	ENST00000429728		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000445587	ENST00000482975		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000445587	ENST00000438261		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000445587	ENST00000449935		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000445587	ENST00000413456		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5CDS-5UTR	ENST00000445587	ENST00000454893		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-3CDS	ENST00000482876	ENST00000272348		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-5UTR	ENST00000482876	ENST00000429728		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-5UTR	ENST00000482876	ENST00000482975		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-5UTR	ENST00000482876	ENST00000438261		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-5UTR	ENST00000482876	ENST00000449935		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-5UTR	ENST00000482876	ENST00000413456		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
5UTR-5UTR	ENST00000482876	ENST00000454893		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-3CDS	ENST00000416149	ENST00000272348		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-5UTR	ENST00000416149	ENST00000429728		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-5UTR	ENST00000416149	ENST00000482975		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-5UTR	ENST00000416149	ENST00000438261		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-5UTR	ENST00000416149	ENST00000449935		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-5UTR	ENST00000416149	ENST00000413456		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-5UTR	ENST00000416149	ENST00000454893		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	TIA1	chr2	70443340	-	SNRPG	chr2	70508816	-
intron-3CDS	ENST00000466084	ENST00000296129		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000466084	ENST00000425231		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000466084	ENST00000490471		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-3CDS	ENST00000296127	ENST00000296129		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000296127	ENST00000425231		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000296127	ENST00000490471		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-3CDS	ENST00000424952	ENST00000296129		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000424952	ENST00000425231		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000424952	ENST00000490471		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-3CDS	ENST00000342790	ENST00000296129		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000342790	ENST00000425231		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
intron-intron	ENST00000342790	ENST00000490471		TCGA	LD	ESCA	TCGA-L5-A8NE-01A	ZDHHC3	chr3	44959402	-	CDCP1	chr3	45130633	-
5CDS-5UTR	ENST00000005260	ENST00000265742		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	BAIAP2L1	chr7	97933508	-	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000005260	ENST00000486698		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	BAIAP2L1	chr7	97933508	-	ANKIB1	chr7	91924203	+
intron-5UTR	ENST00000462558	ENST00000265742		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	BAIAP2L1	chr7	97933508	-	ANKIB1	chr7	91924203	+
intron-intron	ENST00000462558	ENST00000486698		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	BAIAP2L1	chr7	97933508	-	ANKIB1	chr7	91924203	+
intron-3CDS	ENST00000343933	ENST00000375147		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	CORO2A	chr9	100884935	-	NCBP1	chr9	100403076	+
intron-intron	ENST00000343933	ENST00000491445		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	CORO2A	chr9	100884935	-	NCBP1	chr9	100403076	+
intron-3CDS	ENST00000375077	ENST00000375147		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	CORO2A	chr9	100884935	-	NCBP1	chr9	100403076	+
intron-intron	ENST00000375077	ENST00000491445		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	CORO2A	chr9	100884935	-	NCBP1	chr9	100403076	+
intron-3CDS	ENST00000553804	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000553804	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000553804	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000553804	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000553804	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257879	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257879	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257879	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257879	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000257879	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000347027	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000347027	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000347027	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000347027	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000347027	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000452168	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000452168	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000452168	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000452168	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000452168	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394229	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394229	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394229	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394229	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000394229	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257880	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257880	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257880	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000257880	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000257880	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394230	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394230	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394230	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000394230	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000394230	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000555728	ENST00000355192		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000555728	ENST00000308259		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000555728	ENST00000540804		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-3CDS	ENST00000555728	ENST00000535664		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
intron-intron	ENST00000555728	ENST00000538725		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	ITGA7	chr12	56109703	-	MSRB3	chr12	65720606	+
In-frame	ENST00000360663	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000360663	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000360663	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000360663	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000360663	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000360663	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-intron	ENST00000360663	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394828	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394828	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394828	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394828	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000394828	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000394828	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-intron	ENST00000394828	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394829	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394829	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394829	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
In-frame	ENST00000394829	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000394829	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000394829	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-intron	ENST00000394829	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000342558	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000342558	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000342558	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000342558	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000342558	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000342558	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-intron	ENST00000342558	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000545874	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000545874	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000545874	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000545874	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000545874	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000545874	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-intron	ENST00000545874	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000394822	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000394822	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000394822	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000394822	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000394822	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000394822	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-intron	ENST00000394822	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
Frame-shit	ENST00000544628	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
Frame-shit	ENST00000544628	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
Frame-shit	ENST00000544628	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
Frame-shit	ENST00000544628	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000544628	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-5UTR	ENST00000544628	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5CDS-intron	ENST00000544628	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000495897	ENST00000339859		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000495897	ENST00000408019		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000495897	ENST00000428547		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-3CDS	ENST00000495897	ENST00000394811		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000495897	ENST00000497106		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-5UTR	ENST00000495897	ENST00000422491		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
intron-intron	ENST00000495897	ENST00000319786		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	PPP3CB	chr10	75204483	-	USP54	chr10	75265184	-
5UTR-intron	ENST00000405486	ENST00000396504		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
5UTR-intron	ENST00000405486	ENST00000355209		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
5UTR-intron	ENST00000405486	ENST00000337566		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
5UTR-intron	ENST00000405486	ENST00000407461		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
5UTR-intron	ENST00000405486	ENST00000420561		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000356244	ENST00000396504		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000356244	ENST00000355209		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000356244	ENST00000337566		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000356244	ENST00000407461		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000356244	ENST00000420561		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000455915	ENST00000396504		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000455915	ENST00000355209		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000455915	ENST00000337566		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000455915	ENST00000407461		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000455915	ENST00000420561		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000407260	ENST00000396504		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000407260	ENST00000355209		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000407260	ENST00000337566		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000407260	ENST00000407461		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
intron-intron	ENST00000407260	ENST00000420561		TCGA	LD	ESCA	TCGA-L5-A8NF-01A	RANGAP1	chr22	41680905	-	POLR3H	chr22	41929691	-
Frame-shit	ENST00000270517	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000270517	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000270517	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-3CDS	ENST00000588998	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-intron	ENST00000588998	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-intron	ENST00000588998	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
In-frame	ENST00000252440	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000252440	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000252440	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-3CDS	ENST00000417981	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-intron	ENST00000417981	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-intron	ENST00000417981	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
Frame-shit	ENST00000591104	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000591104	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000591104	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
Frame-shit	ENST00000592312	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000592312	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-intron	ENST00000592312	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-3CDS	ENST00000591352	ENST00000380456		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-intron	ENST00000591352	ENST00000568628		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
intron-intron	ENST00000591352	ENST00000393423		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11508273	-
5CDS-5UTR	ENST00000287912	ENST00000338761		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
5CDS-5UTR	ENST00000287912	ENST00000493111		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
5CDS-5UTR	ENST00000401878	ENST00000338761		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
5CDS-5UTR	ENST00000401878	ENST00000493111		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
5CDS-5UTR	ENST00000392759	ENST00000338761		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
5CDS-5UTR	ENST00000392759	ENST00000493111		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
intron-5UTR	ENST00000486747	ENST00000338761		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
intron-5UTR	ENST00000486747	ENST00000493111		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
intron-5UTR	ENST00000341148	ENST00000338761		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
intron-5UTR	ENST00000341148	ENST00000493111		TCGA	LD	ESCA	TCGA-L5-A8NG-01A	RBM33	chr7	155437613	+	TMEM120A	chr7	75618542	-
In-frame	ENST00000393829	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000393829	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000393829	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000393829	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000393829	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000393829	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000546249	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000546249	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000546249	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000546249	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000546249	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000546249	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000537728	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000537728	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000537728	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000537728	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000537728	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000537728	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000264649	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000264649	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000264649	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000264649	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000264649	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000264649	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000585525	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000585525	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000585525	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000585525	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000585525	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000585525	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000343619	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000343619	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000343619	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000343619	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000343619	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000343619	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000544137	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
In-frame	ENST00000544137	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000544137	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000544137	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-5UTR	ENST00000544137	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5CDS-intron	ENST00000544137	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
intron-3CDS	ENST00000587797	ENST00000264657		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
intron-3CDS	ENST00000587797	ENST00000585517		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
intron-5UTR	ENST00000587797	ENST00000389272		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
intron-5UTR	ENST00000587797	ENST00000588969		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
intron-5UTR	ENST00000587797	ENST00000404395		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
intron-intron	ENST00000587797	ENST00000590776		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	ATP6V0A1	chr17	40666478	+	STAT3	chr17	40498731	-
5UTR-3CDS	ENST00000370651	ENST00000263388		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	PTP4A1	chr6	64282624	+	NOTCH3	chr19	15280981	-
5UTR-3CDS	ENST00000370650	ENST00000263388		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	PTP4A1	chr6	64282624	+	NOTCH3	chr19	15280981	-
Frame-shit	ENST00000578299	ENST00000263388		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	PTP4A1	chr6	64282624	+	NOTCH3	chr19	15280981	-
intron-3CDS	ENST00000473334	ENST00000263388		TCGA	LD	ESCA	TCGA-L5-A8NH-01A	PTP4A1	chr6	64282624	+	NOTCH3	chr19	15280981	-
intron-5UTR	ENST00000544564	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
intron-5UTR	ENST00000544564	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
intron-5UTR	ENST00000541571	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
intron-5UTR	ENST00000541571	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
intron-5UTR	ENST00000535424	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
intron-5UTR	ENST00000535424	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000378799	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000378799	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
3UTR-5UTR	ENST00000538565	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
3UTR-5UTR	ENST00000538565	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000606369	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000606369	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000329908	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000329908	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000538850	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000538850	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000378798	ENST00000268482		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5UTR-5UTR	ENST00000378798	ENST00000536867		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	IST1	chr16	71929492	+	DHX38	chr16	72130038	+
5CDS-intron	ENST00000406486	ENST00000483512		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KIAA1671	chr22	25445331	+	CNIH3	chr1	224868660	+
5CDS-intron	ENST00000406486	ENST00000272133		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KIAA1671	chr22	25445331	+	CNIH3	chr1	224868660	+
5CDS-intron	ENST00000358431	ENST00000483512		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KIAA1671	chr22	25445331	+	CNIH3	chr1	224868660	+
5CDS-intron	ENST00000358431	ENST00000272133		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KIAA1671	chr22	25445331	+	CNIH3	chr1	224868660	+
intron-intron	ENST00000401395	ENST00000483512		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KIAA1671	chr22	25445331	+	CNIH3	chr1	224868660	+
intron-intron	ENST00000401395	ENST00000272133		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KIAA1671	chr22	25445331	+	CNIH3	chr1	224868660	+
In-frame	ENST00000262189	ENST00000354725		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
5CDS-intron	ENST00000262189	ENST00000467238		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
In-frame	ENST00000355193	ENST00000354725		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
5CDS-intron	ENST00000355193	ENST00000467238		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
intron-3CDS	ENST00000485655	ENST00000354725		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
intron-intron	ENST00000485655	ENST00000467238		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
intron-3CDS	ENST00000485241	ENST00000354725		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
intron-intron	ENST00000485241	ENST00000467238		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	KMT2C	chr7	152132711	-	SND1	chr7	127447538	+
Frame-shit	ENST00000380737	ENST00000509990		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
Frame-shit	ENST00000380737	ENST00000361059		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-5UTR	ENST00000380737	ENST00000504203		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-5UTR	ENST00000380737	ENST00000502929		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-5UTR	ENST00000380737	ENST00000394800		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000380737	ENST00000507197		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000380737	ENST00000394805		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000380737	ENST00000502499		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000380737	ENST00000510056		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000380737	ENST00000503811		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
Frame-shit	ENST00000315985	ENST00000509990		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
Frame-shit	ENST00000315985	ENST00000361059		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-5UTR	ENST00000315985	ENST00000504203		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-5UTR	ENST00000315985	ENST00000502929		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-5UTR	ENST00000315985	ENST00000394800		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000315985	ENST00000507197		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000315985	ENST00000394805		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000315985	ENST00000502499		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000315985	ENST00000510056		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000315985	ENST00000503811		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-3CDS	ENST00000523473	ENST00000509990		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-3CDS	ENST00000523473	ENST00000361059		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-5UTR	ENST00000523473	ENST00000504203		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-5UTR	ENST00000523473	ENST00000502929		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-5UTR	ENST00000523473	ENST00000394800		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-intron	ENST00000523473	ENST00000507197		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-intron	ENST00000523473	ENST00000394805		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-intron	ENST00000523473	ENST00000502499		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-intron	ENST00000523473	ENST00000510056		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
3UTR-intron	ENST00000523473	ENST00000503811		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	PPP2R2A	chr8	26151256	+	MATR3	chr5	138650364	+
5CDS-intron	ENST00000310653	ENST00000294309		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000310653	ENST00000542467		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000310653	ENST00000442692		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000336083	ENST00000294309		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000336083	ENST00000542467		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000336083	ENST00000442692		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
intron-intron	ENST00000536566	ENST00000294309		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
intron-intron	ENST00000536566	ENST00000542467		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
intron-intron	ENST00000536566	ENST00000442692		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000541588	ENST00000294309		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000541588	ENST00000542467		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
5CDS-intron	ENST00000541588	ENST00000442692		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RAB6A	chr11	73471611	-	TPCN2	chr11	68926914	+
Frame-shit	ENST00000221452	ENST00000586228		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000221452	ENST00000313040		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000221452	ENST00000589707		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
In-frame	ENST00000221452	ENST00000589005		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
In-frame	ENST00000221452	ENST00000391961		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
5CDS-intron	ENST00000221452	ENST00000589237		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000540120	ENST00000586228		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000540120	ENST00000313040		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000540120	ENST00000589707		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
In-frame	ENST00000540120	ENST00000589005		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
In-frame	ENST00000540120	ENST00000391961		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
5CDS-intron	ENST00000540120	ENST00000589237		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000505236	ENST00000586228		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000505236	ENST00000313040		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
Frame-shit	ENST00000505236	ENST00000589707		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
In-frame	ENST00000505236	ENST00000589005		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
In-frame	ENST00000505236	ENST00000391961		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
5CDS-intron	ENST00000505236	ENST00000589237		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	RELB	chr19	45532250	+	ZNF227	chr19	44738855	+
intron-3CDS	ENST00000296043	ENST00000293872		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000296043	ENST00000337351		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000296043	ENST00000397783		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000296043	ENST00000397780		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-intron	ENST00000296043	ENST00000494366		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000473602	ENST00000293872		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000473602	ENST00000337351		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000473602	ENST00000397783		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000473602	ENST00000397780		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
intron-intron	ENST00000473602	ENST00000494366		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	SHROOM3	chr4	77507622	+	LUC7L	chr16	258187	-
5CDS-5UTR	ENST00000448507	ENST00000320912		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
5CDS-5UTR	ENST00000448507	ENST00000507420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
5CDS-5UTR	ENST00000448507	ENST00000382581		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
5CDS-5UTR	ENST00000409757	ENST00000320912		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
5CDS-5UTR	ENST00000409757	ENST00000507420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
5CDS-5UTR	ENST00000409757	ENST00000382581		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000410031	ENST00000320912		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000410031	ENST00000507420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000410031	ENST00000382581		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000451522	ENST00000320912		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000451522	ENST00000507420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000451522	ENST00000382581		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000446947	ENST00000320912		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000446947	ENST00000507420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000446947	ENST00000382581		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TBC1D14	chr4	6925838	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000354618	ENST00000434513		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000354618	ENST00000361221		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000354618	ENST00000452522		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000354618	ENST00000375415		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000354618	ENST00000375420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000354618	ENST00000469726		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000354618	ENST00000375408		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000354618	ENST00000167825		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000469141	ENST00000434513		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000469141	ENST00000361221		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000469141	ENST00000452522		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-5UTR	ENST00000469141	ENST00000375415		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000469141	ENST00000375420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000469141	ENST00000469726		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000469141	ENST00000375408		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
5UTR-intron	ENST00000469141	ENST00000167825		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-5UTR	ENST00000466743	ENST00000434513		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-5UTR	ENST00000466743	ENST00000361221		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-5UTR	ENST00000466743	ENST00000452522		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-5UTR	ENST00000466743	ENST00000375415		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-intron	ENST00000466743	ENST00000375420		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-intron	ENST00000466743	ENST00000469726		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-intron	ENST00000466743	ENST00000375408		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
intron-intron	ENST00000466743	ENST00000167825		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	THRAP3	chr1	36690106	+	ARHGEF10L	chr1	17907048	+
Frame-shit	ENST00000253047	ENST00000253048		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TMEM160	chr19	47549851	-	ZC3H4	chr19	47585552	-
5CDS-intron	ENST00000253047	ENST00000594019		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TMEM160	chr19	47549851	-	ZC3H4	chr19	47585552	-
In-frame	ENST00000375098	ENST00000343933		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
In-frame	ENST00000375098	ENST00000375077		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
intron-3CDS	ENST00000478530	ENST00000343933		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
intron-3CDS	ENST00000478530	ENST00000375077		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
In-frame	ENST00000342043	ENST00000343933		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
In-frame	ENST00000342043	ENST00000375077		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
In-frame	ENST00000341469	ENST00000343933		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
In-frame	ENST00000341469	ENST00000375077		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
intron-3CDS	ENST00000538344	ENST00000343933		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
intron-3CDS	ENST00000538344	ENST00000375077		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	TRIM14	chr9	100881264	-	CORO2A	chr9	100899970	-
intron-intron	ENST00000343550	ENST00000303586		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000343550	ENST00000439785		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000343550	ENST00000601957		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000343550	ENST00000601142		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-5UTR	ENST00000343550	ENST00000426813		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000343550	ENST00000595818		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000303586		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000439785		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000601957		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000601142		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000222305	ENST00000426813		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000222305	ENST00000595818		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000303586		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000439785		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000601957		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000601142		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000595068	ENST00000426813		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000595068	ENST00000595818		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000379134	ENST00000303586		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000379134	ENST00000439785		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000379134	ENST00000601957		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000379134	ENST00000601142		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-5UTR	ENST00000379134	ENST00000426813		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000379134	ENST00000595818		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000303586		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000439785		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000601957		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000601142		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-5UTR	ENST00000594064	ENST00000426813		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-intron	ENST00000594064	ENST00000595818		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000303586		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000439785		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000601957		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000601142		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-5UTR	ENST00000600341	ENST00000426813		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
intron-intron	ENST00000600341	ENST00000595818		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	USF2	chr19	35760906	+	ZNF30	chr19	35433498	+
5CDS-3UTR	ENST00000369577	ENST00000464978		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000369577	ENST00000369556		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000369577	ENST00000544441		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000369577	ENST00000369552		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000369577	ENST00000369557		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000339907	ENST00000464978		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000339907	ENST00000369556		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000339907	ENST00000544441		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000339907	ENST00000369552		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000339907	ENST00000369557		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000392985	ENST00000464978		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-3UTR	ENST00000392985	ENST00000369556		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000392985	ENST00000544441		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000392985	ENST00000369552		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
5CDS-intron	ENST00000392985	ENST00000369557		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
3UTR-3UTR	ENST00000369578	ENST00000464978		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
3UTR-3UTR	ENST00000369578	ENST00000369556		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
3UTR-intron	ENST00000369578	ENST00000544441		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
3UTR-intron	ENST00000369578	ENST00000369552		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
3UTR-intron	ENST00000369578	ENST00000369557		TCGA	LD	ESCA	TCGA-L5-A8NI-01A	ZNF292	chr6	87865477	+	SLC35A1	chr6	88210226	+
In-frame	ENST00000313654	ENST00000229304		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	LAMA3	chr18	21519350	+	APOBEC1	chr12	7805431	-
In-frame	ENST00000399516	ENST00000229304		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	LAMA3	chr18	21519350	+	APOBEC1	chr12	7805431	-
In-frame	ENST00000269217	ENST00000229304		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	LAMA3	chr18	21519350	+	APOBEC1	chr12	7805431	-
In-frame	ENST00000587184	ENST00000229304		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	LAMA3	chr18	21519350	+	APOBEC1	chr12	7805431	-
3UTR-3CDS	ENST00000588770	ENST00000229304		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	LAMA3	chr18	21519350	+	APOBEC1	chr12	7805431	-
5UTR-3CDS	ENST00000445299	ENST00000327134		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	SENP5	chr3	196594944	+	PAK2	chr3	196554067	+
5UTR-3CDS	ENST00000323460	ENST00000327134		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	SENP5	chr3	196594944	+	PAK2	chr3	196554067	+
5UTR-3CDS	ENST00000419026	ENST00000327134		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	SENP5	chr3	196594944	+	PAK2	chr3	196554067	+
intron-3CDS	ENST00000489744	ENST00000327134		TCGA	LD	ESCA	TCGA-L5-A8NJ-01A	SENP5	chr3	196594944	+	PAK2	chr3	196554067	+
In-frame	ENST00000589222	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000589222	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000407086	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000407086	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000390652	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000390652	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000408905	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000408905	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000588462	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000588462	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000585744	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000585744	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000588874	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
In-frame	ENST00000588874	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
intron-3CDS	ENST00000585812	ENST00000435607		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
intron-3CDS	ENST00000585812	ENST00000578147		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	BCAS3	chr17	59161925	+	SCN4A	chr17	62038791	-
Frame-shit	ENST00000327283	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000327283	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000327283	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000327283	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000327283	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000327283	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000591115	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000591115	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000591115	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000591115	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000591115	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000591115	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000353319	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000353319	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000353319	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000353319	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000353319	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000353319	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000309660	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000309660	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
Frame-shit	ENST00000309660	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000309660	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000309660	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000309660	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-3CDS	ENST00000589086	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-3CDS	ENST00000589086	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-3CDS	ENST00000589086	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-intron	ENST00000589086	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-intron	ENST00000589086	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-intron	ENST00000589086	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
In-frame	ENST00000591497	ENST00000400105		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
In-frame	ENST00000591497	ENST00000317931		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
In-frame	ENST00000591497	ENST00000284898		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000591497	ENST00000400104		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000591497	ENST00000535782		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
5CDS-intron	ENST00000591497	ENST00000578677		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	PTPN2	chr18	12814202	-	L3MBTL4	chr18	5969561	-
intron-intron	ENST00000360502	ENST00000316757		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	SLFN13	chr17	33766094	-	APBA3	chr19	3751772	-
intron-intron	ENST00000285013	ENST00000316757		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	SLFN13	chr17	33766094	-	APBA3	chr19	3751772	-
intron-intron	ENST00000526861	ENST00000316757		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	SLFN13	chr17	33766094	-	APBA3	chr19	3751772	-
intron-intron	ENST00000542635	ENST00000316757		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	SLFN13	chr17	33766094	-	APBA3	chr19	3751772	-
intron-intron	ENST00000534689	ENST00000316757		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	SLFN13	chr17	33766094	-	APBA3	chr19	3751772	-
intron-intron	ENST00000533791	ENST00000316757		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	SLFN13	chr17	33766094	-	APBA3	chr19	3751772	-
5CDS-3UTR	ENST00000424789	ENST00000371497		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	TANC2	chr17	61396451	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000424789	ENST00000603338		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	TANC2	chr17	61396451	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000424789	ENST00000329613		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	TANC2	chr17	61396451	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000389520	ENST00000371497		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	TANC2	chr17	61396451	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000389520	ENST00000603338		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	TANC2	chr17	61396451	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000389520	ENST00000329613		TCGA	LD	ESCA	TCGA-L5-A8NL-01A	TANC2	chr17	61396451	+	TSHZ2	chr20	52103683	+
intron-3CDS	ENST00000532481	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000532481	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000532481	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000532481	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-intron	ENST00000532481	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000527134	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000527134	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000527134	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000527134	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-intron	ENST00000527134	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000304716	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000304716	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000304716	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000304716	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-intron	ENST00000304716	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000526415	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000526415	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000526415	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000526415	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-intron	ENST00000526415	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
3UTR-3CDS	ENST00000531855	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
3UTR-3CDS	ENST00000531855	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
3UTR-3CDS	ENST00000531855	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
3UTR-3CDS	ENST00000531855	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
3UTR-intron	ENST00000531855	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000393427	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000393427	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000393427	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000393427	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-intron	ENST00000393427	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000525409	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000525409	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000525409	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-3CDS	ENST00000525409	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
5UTR-intron	ENST00000525409	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533193	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533193	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533193	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000533193	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-intron	ENST00000533193	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525034	ENST00000340353		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525034	ENST00000532959		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525034	ENST00000305494		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-3CDS	ENST00000525034	ENST00000535167		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
intron-intron	ENST00000525034	ENST00000355734		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	AAMDC	chr11	77532287	+	TMEM135	chr11	87006824	+
In-frame	ENST00000359373	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000359373	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000359373	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000359373	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000359373	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5UTR-3CDS	ENST00000495878	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5UTR-3CDS	ENST00000495878	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5UTR-3CDS	ENST00000495878	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5UTR-3CDS	ENST00000495878	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5UTR-intron	ENST00000495878	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000455638	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000455638	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000455638	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000455638	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000455638	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000393605	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000393605	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000393605	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000393605	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000393605	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000334211	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000334211	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000334211	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000334211	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000334211	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
Frame-shit	ENST00000393609	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
Frame-shit	ENST00000393609	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
Frame-shit	ENST00000393609	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
Frame-shit	ENST00000393609	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000393609	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000426523	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000426523	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000426523	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000426523	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000426523	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000429686	ENST00000371000		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000429686	ENST00000262345		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000429686	ENST00000541374		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
In-frame	ENST00000429686	ENST00000544434		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-intron	ENST00000429686	ENST00000465396		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	ARAP1	chr11	72404370	-	IL12RB2	chr1	67816553	+
5CDS-5UTR	ENST00000532982	ENST00000411426		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
5CDS-5UTR	ENST00000532982	ENST00000529618		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
5CDS-5UTR	ENST00000532982	ENST00000343597		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
5CDS-5UTR	ENST00000227451	ENST00000411426		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
5CDS-5UTR	ENST00000227451	ENST00000529618		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
5CDS-5UTR	ENST00000227451	ENST00000343597		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
intron-5UTR	ENST00000531902	ENST00000411426		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
intron-5UTR	ENST00000531902	ENST00000529618		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
intron-5UTR	ENST00000531902	ENST00000343597		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	DTX4	chr11	58967246	+	FAM111B	chr11	58891652	+
5CDS-5UTR	ENST00000300952	ENST00000592854		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	MIDN	chr19	1255693	+	C19orf38	chr19	10959117	+
5CDS-5UTR	ENST00000300952	ENST00000397820		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	MIDN	chr19	1255693	+	C19orf38	chr19	10959117	+
5CDS-5UTR	ENST00000591446	ENST00000592854		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	MIDN	chr19	1255693	+	C19orf38	chr19	10959117	+
5CDS-5UTR	ENST00000591446	ENST00000397820		TCGA	LD	ESCA	TCGA-L5-A8NS-01A	MIDN	chr19	1255693	+	C19orf38	chr19	10959117	+
intron-3CDS	ENST00000563675	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
intron-intron	ENST00000563675	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
intron-intron	ENST00000563675	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
intron-intron	ENST00000563675	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
intron-intron	ENST00000563675	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
intron-intron	ENST00000563675	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000541464	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000541464	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000541464	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000541464	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000541464	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000541464	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000381414	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000381414	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000381414	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000381414	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000381414	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000381414	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000396229	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000396229	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000396229	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000396229	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000396229	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000396229	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000542583	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000542583	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000542583	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000542583	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000542583	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000542583	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000219821	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000219821	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000219821	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000219821	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000219821	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000219821	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000561503	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000561503	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000561503	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000561503	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000561503	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000561503	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
Frame-shit	ENST00000564959	ENST00000300571		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000564959	ENST00000569102		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000564959	ENST00000535671		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000564959	ENST00000569479		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000564959	ENST00000537135		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
5CDS-intron	ENST00000564959	ENST00000569847		TCGA	LD	ESCA	TCGA-L5-A8NU-01A	TMC5	chr16	19508485	+	GPRC5B	chr16	19883272	-
In-frame	ENST00000353533	ENST00000262442		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
In-frame	ENST00000353533	ENST00000454412		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
In-frame	ENST00000353533	ENST00000608377		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
5CDS-3UTR	ENST00000353533	ENST00000396001		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
5CDS-intron	ENST00000353533	ENST00000579828		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
In-frame	ENST00000415385	ENST00000262442		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
In-frame	ENST00000415385	ENST00000454412		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
In-frame	ENST00000415385	ENST00000608377		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
5CDS-3UTR	ENST00000415385	ENST00000396001		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
5CDS-intron	ENST00000415385	ENST00000579828		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
intron-3CDS	ENST00000581941	ENST00000262442		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
intron-3CDS	ENST00000581941	ENST00000454412		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
intron-3CDS	ENST00000581941	ENST00000608377		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
intron-3UTR	ENST00000581941	ENST00000396001		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
intron-intron	ENST00000581941	ENST00000579828		TCGA	LD	ESCA	TCGA-L5-A8NV-01A	MAP2K4	chr17	11924318	+	DNAH9	chr17	11827131	+
In-frame	ENST00000381527	ENST00000381655		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
5CDS-intron	ENST00000381527	ENST00000255283		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
5CDS-3UTR	ENST00000381527	ENST00000491840		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
In-frame	ENST00000536792	ENST00000381655		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
5CDS-intron	ENST00000536792	ENST00000255283		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
5CDS-3UTR	ENST00000536792	ENST00000491840		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
intron-3CDS	ENST00000480323	ENST00000381655		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
intron-intron	ENST00000480323	ENST00000255283		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
intron-3UTR	ENST00000480323	ENST00000491840		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	CDK8	chr13	26928017	+	ATP8A2	chr13	26402256	+
5CDS-5UTR	ENST00000234296	ENST00000321153		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	ORC2	chr2	201790559	-	RPLP2	chr11	809992	+
5CDS-3UTR	ENST00000234296	ENST00000532004		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	ORC2	chr2	201790559	-	RPLP2	chr11	809992	+
5CDS-5UTR	ENST00000234296	ENST00000530797		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	ORC2	chr2	201790559	-	RPLP2	chr11	809992	+
intron-5UTR	ENST00000467605	ENST00000321153		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	ORC2	chr2	201790559	-	RPLP2	chr11	809992	+
intron-3UTR	ENST00000467605	ENST00000532004		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	ORC2	chr2	201790559	-	RPLP2	chr11	809992	+
intron-5UTR	ENST00000467605	ENST00000530797		TCGA	LD	ESCA	TCGA-L5-A8NW-01A	ORC2	chr2	201790559	-	RPLP2	chr11	809992	+
5CDS-5UTR	ENST00000263856	ENST00000456996		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-5UTR	ENST00000263856	ENST00000409511		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000263856	ENST00000352580		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000263856	ENST00000283635		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000263856	ENST00000538832		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000263856	ENST00000409781		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-5UTR	ENST00000409727	ENST00000456996		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-5UTR	ENST00000409727	ENST00000409511		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000409727	ENST00000352580		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000409727	ENST00000283635		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000409727	ENST00000538832		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000409727	ENST00000409781		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-5UTR	ENST00000409225	ENST00000456996		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-5UTR	ENST00000409225	ENST00000409511		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000409225	ENST00000352580		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000409225	ENST00000283635		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000409225	ENST00000538832		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000409225	ENST00000409781		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-5UTR	ENST00000439940	ENST00000456996		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-5UTR	ENST00000439940	ENST00000409511		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000439940	ENST00000352580		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000439940	ENST00000283635		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000439940	ENST00000538832		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
5CDS-intron	ENST00000439940	ENST00000409781		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-5UTR	ENST00000494623	ENST00000456996		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-5UTR	ENST00000494623	ENST00000409511		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000494623	ENST00000352580		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000494623	ENST00000283635		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000494623	ENST00000538832		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
intron-intron	ENST00000494623	ENST00000409781		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	CHMP3	chr2	86756341	-	CD8A	chr2	87028780	-
Frame-shit	ENST00000225235	ENST00000339022		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	TBC1D12	chr10	96256929	+	CYP2C18	chr10	96447527	+
Frame-shit	ENST00000225235	ENST00000285979		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	TBC1D12	chr10	96256929	+	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000485048	ENST00000339022		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	TBC1D12	chr10	96256929	+	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000485048	ENST00000285979		TCGA	LD	ESCA	TCGA-L7-A6VZ-01A	TBC1D12	chr10	96256929	+	CYP2C18	chr10	96447527	+
Frame-shit	ENST00000569600	ENST00000334315		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
Frame-shit	ENST00000569600	ENST00000378553		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
5CDS-3UTR	ENST00000569600	ENST00000563818		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
Frame-shit	ENST00000219139	ENST00000334315		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
Frame-shit	ENST00000219139	ENST00000378553		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
5CDS-3UTR	ENST00000219139	ENST00000563818		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
3UTR-3CDS	ENST00000569683	ENST00000334315		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
3UTR-3CDS	ENST00000569683	ENST00000378553		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
3UTR-3UTR	ENST00000569683	ENST00000563818		TCGA	LD	ESCA	TCGA-LN-A49L-01A	C16orf70	chr16	67144142	+	DNAAF1	chr16	84193280	+
5CDS-3UTR	ENST00000378847	ENST00000496136		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CAMK1D	chr10	12391909	+	ECHDC3	chr10	11789348	+
5CDS-3UTR	ENST00000378847	ENST00000379215		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CAMK1D	chr10	12391909	+	ECHDC3	chr10	11789348	+
3UTR-3UTR	ENST00000487696	ENST00000496136		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CAMK1D	chr10	12391909	+	ECHDC3	chr10	11789348	+
3UTR-3UTR	ENST00000487696	ENST00000379215		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CAMK1D	chr10	12391909	+	ECHDC3	chr10	11789348	+
5CDS-3UTR	ENST00000378845	ENST00000496136		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CAMK1D	chr10	12391909	+	ECHDC3	chr10	11789348	+
5CDS-3UTR	ENST00000378845	ENST00000379215		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CAMK1D	chr10	12391909	+	ECHDC3	chr10	11789348	+
5UTR-3CDS	ENST00000423902	ENST00000406337		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
5UTR-3CDS	ENST00000423902	ENST00000265713		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
5UTR-3CDS	ENST00000423902	ENST00000396930		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
5UTR-3CDS	ENST00000423902	ENST00000485568		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000524602	ENST00000406337		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000524602	ENST00000265713		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000524602	ENST00000396930		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000524602	ENST00000485568		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000525508	ENST00000406337		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000525508	ENST00000265713		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000525508	ENST00000396930		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000525508	ENST00000485568		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000529472	ENST00000406337		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000529472	ENST00000265713		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000529472	ENST00000396930		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000529472	ENST00000485568		TCGA	LD	ESCA	TCGA-LN-A49L-01A	CHD7	chr8	61591641	+	KAT6A	chr8	41845081	-
intron-3CDS	ENST00000482812	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000482812	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000482812	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000482812	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000482812	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000482812	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000482812	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3UTR	ENST00000482812	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-3CDS	ENST00000430044	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000430044	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000430044	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000430044	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000430044	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000430044	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000430044	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-3UTR	ENST00000430044	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3CDS	ENST00000452146	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000452146	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000452146	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000452146	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000452146	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000452146	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000452146	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3UTR	ENST00000452146	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-3CDS	ENST00000434507	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000434507	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000434507	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000434507	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000434507	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000434507	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000434507	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-3UTR	ENST00000434507	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3CDS	ENST00000415421	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000415421	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000415421	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000415421	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000415421	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000415421	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000415421	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3UTR	ENST00000415421	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-3CDS	ENST00000320311	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000320311	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000320311	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000320311	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000320311	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000320311	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-intron	ENST00000320311	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
3UTR-3UTR	ENST00000320311	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3CDS	ENST00000422997	ENST00000358849		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000422997	ENST00000542328		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000422997	ENST00000297504		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000422997	ENST00000356058		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000422997	ENST00000498578		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000422997	ENST00000477719		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-intron	ENST00000422997	ENST00000477092		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
intron-3UTR	ENST00000422997	ENST00000493338		TCGA	LD	ESCA	TCGA-LN-A49L-01A	GALNT11	chr7	151818989	+	ABCB8	chr7	150730692	+
Frame-shit	ENST00000262384	ENST00000311303		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
Frame-shit	ENST00000262384	ENST00000448542		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
Frame-shit	ENST00000262384	ENST00000416054		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
5CDS-intron	ENST00000262384	ENST00000532355		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
intron-3CDS	ENST00000565423	ENST00000311303		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
intron-3CDS	ENST00000565423	ENST00000448542		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
intron-3CDS	ENST00000565423	ENST00000416054		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
intron-intron	ENST00000565423	ENST00000532355		TCGA	LD	ESCA	TCGA-LN-A49L-01A	N4BP1	chr16	48594665	-	ABCC12	chr16	48167746	-
In-frame	ENST00000250495	ENST00000397002		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
Frame-shit	ENST00000250495	ENST00000561028		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
Frame-shit	ENST00000250495	ENST00000396997		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5CDS-5UTR	ENST00000250495	ENST00000560550		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5CDS-5UTR	ENST00000250495	ENST00000396995		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
In-frame	ENST00000524927	ENST00000397002		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
Frame-shit	ENST00000524927	ENST00000561028		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
Frame-shit	ENST00000524927	ENST00000396997		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5CDS-5UTR	ENST00000524927	ENST00000560550		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5CDS-5UTR	ENST00000524927	ENST00000396995		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5UTR-3CDS	ENST00000533242	ENST00000397002		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5UTR-3CDS	ENST00000533242	ENST00000561028		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5UTR-3CDS	ENST00000533242	ENST00000396997		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5UTR-5UTR	ENST00000533242	ENST00000560550		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
5UTR-5UTR	ENST00000533242	ENST00000396995		TCGA	LD	ESCA	TCGA-LN-A49L-01A	NEDD8	chr14	24701456	-	NRL	chr14	24550777	-
Frame-shit	ENST00000424085	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000424085	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000424085	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000257075	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000257075	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000257075	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000373747	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000373747	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373747	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000426105	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000426105	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000426105	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000440538	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000440538	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000440538	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373741	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373741	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373741	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000423018	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000423018	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000423018	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373742	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
In-frame	ENST00000373742	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
5CDS-5UTR	ENST00000373742	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000336798		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-3CDS	ENST00000490546	ENST00000339394		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
intron-5UTR	ENST00000490546	ENST00000471567		TCGA	LD	ESCA	TCGA-LN-A49L-01A	PUM1	chr1	31532051	-	SDC3	chr1	31351587	-
Frame-shit	ENST00000380985	ENST00000355078		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
Frame-shit	ENST00000380985	ENST00000302763		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
Frame-shit	ENST00000380985	ENST00000518825		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
5CDS-intron	ENST00000380985	ENST00000520400		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
5CDS-intron	ENST00000380985	ENST00000540387		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
Frame-shit	ENST00000502464	ENST00000355078		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
Frame-shit	ENST00000502464	ENST00000302763		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
Frame-shit	ENST00000502464	ENST00000518825		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
5CDS-intron	ENST00000502464	ENST00000520400		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
5CDS-intron	ENST00000502464	ENST00000540387		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
intron-3CDS	ENST00000515595	ENST00000355078		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
intron-3CDS	ENST00000515595	ENST00000302763		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
intron-3CDS	ENST00000515595	ENST00000518825		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
intron-intron	ENST00000515595	ENST00000520400		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
intron-intron	ENST00000515595	ENST00000540387		TCGA	LD	ESCA	TCGA-LN-A49M-01A	NLN	chr5	65081657	+	CTNNA1	chr5	138266272	+
5UTR-3CDS	ENST00000392259	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000392259	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000392259	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-3CDS	ENST00000392266	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000392266	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000392266	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-3CDS	ENST00000264274	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000264274	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000264274	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-3CDS	ENST00000432109	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000432109	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000432109	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-3CDS	ENST00000264275	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000264275	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000264275	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-3CDS	ENST00000392258	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000392258	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
5UTR-intron	ENST00000392258	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
3UTR-3CDS	ENST00000490682	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
3UTR-intron	ENST00000490682	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
3UTR-intron	ENST00000490682	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
intron-3CDS	ENST00000358485	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
intron-intron	ENST00000358485	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
intron-intron	ENST00000358485	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
intron-3CDS	ENST00000323492	ENST00000194530		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
intron-intron	ENST00000323492	ENST00000488196		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
intron-intron	ENST00000323492	ENST00000392249		TCGA	LD	ESCA	TCGA-LN-A49O-01A	CASP8	chr2	202098835	+	STRADB	chr2	202334676	+
In-frame	ENST00000328041	ENST00000255006		TCGA	LD	ESCA	TCGA-LN-A49O-01A	SLC24A3	chr20	19261731	+	RIN2	chr20	19970650	+
In-frame	ENST00000328041	ENST00000440354		TCGA	LD	ESCA	TCGA-LN-A49O-01A	SLC24A3	chr20	19261731	+	RIN2	chr20	19970650	+
5CDS-3UTR	ENST00000328041	ENST00000484638		TCGA	LD	ESCA	TCGA-LN-A49O-01A	SLC24A3	chr20	19261731	+	RIN2	chr20	19970650	+
intron-3CDS	ENST00000550574	ENST00000542955		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
intron-3CDS	ENST00000550574	ENST00000269593		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
Frame-shit	ENST00000541364	ENST00000542955		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
Frame-shit	ENST00000541364	ENST00000269593		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
Frame-shit	ENST00000301072	ENST00000542955		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
Frame-shit	ENST00000301072	ENST00000269593		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000549183	ENST00000542955		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000549183	ENST00000269593		TCGA	LD	ESCA	TCGA-LN-A49O-01A	TUBA1C	chr12	49663759	+	IGFBP4	chr17	38609237	+
In-frame	ENST00000354981	ENST00000581852		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000403303		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000383096		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000300227		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000579916		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000406524		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000583930		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000402325		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000354981	ENST00000579947		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000354981	ENST00000583550		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000581852		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000403303		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000383096		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000300227		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000579916		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000406524		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000583930		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000402325		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000378003	ENST00000579947		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000378003	ENST00000583550		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000581852		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000403303		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000383096		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000300227		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000579916		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000406524		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000583930		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000402325		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000355755	ENST00000579947		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000355755	ENST00000583550		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000581852		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000403303		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000383096		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000300227		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000579916		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000406524		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000583930		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000402325		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
In-frame	ENST00000408042	ENST00000579947		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000408042	ENST00000583550		TCGA	LD	ESCA	TCGA-LN-A49P-01A	KIF16B	chr20	16352310	-	CCDC178	chr18	30554645	-
5UTR-3UTR	ENST00000502976	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5UTR-3UTR	ENST00000422453	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5UTR-3UTR	ENST00000451728	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5UTR-3UTR	ENST00000446936	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5UTR-3UTR	ENST00000500450	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5UTR-3UTR	ENST00000504813	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5UTR-3UTR	ENST00000441626	ENST00000525262		TCGA	LD	ESCA	TCGA-LN-A49R-01A	CNBP	chr3	128902619	-	UNC93B6	chr11	71316395	+
5CDS-intron	ENST00000521654	ENST00000368416		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000368417		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000546092		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000545433		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000476571		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000368416		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000368417		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000546092		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000545433		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000476571		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000368416		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000368417		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000546092		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000545433		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000476571		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368414	ENST00000368416		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368414	ENST00000368417		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368414	ENST00000546092		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368414	ENST00000545433		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000368414	ENST00000476571		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000359704	ENST00000368416		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000359704	ENST00000368417		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000359704	ENST00000546092		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000359704	ENST00000545433		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000359704	ENST00000476571		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000368416		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000368417		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000546092		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000545433		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000476571		TCGA	LD	ESCA	TCGA-LN-A49R-01A	RNF217	chr6	125284572	+	NKAIN2	chr6	125112485	+
Frame-shit	ENST00000248594	ENST00000257626		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-intron	ENST00000248594	ENST00000441833		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-intron	ENST00000248594	ENST00000440473		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-5UTR	ENST00000248594	ENST00000430584		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
Frame-shit	ENST00000415482	ENST00000257626		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-intron	ENST00000415482	ENST00000441833		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-intron	ENST00000415482	ENST00000440473		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-5UTR	ENST00000415482	ENST00000430584		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
Frame-shit	ENST00000435495	ENST00000257626		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-intron	ENST00000435495	ENST00000441833		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-intron	ENST00000435495	ENST00000440473		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-5UTR	ENST00000435495	ENST00000430584		TCGA	LD	ESCA	TCGA-LN-A49U-01A	PTPN12	chr7	77221573	+	GSAP	chr7	77035422	-
5CDS-3UTR	ENST00000295851	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000295851	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000295851	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000295851	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000295851	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000261017	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000261017	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000261017	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000261017	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000261017	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000430418	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000430418	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000430418	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000430418	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000430418	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000424558	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000424558	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000424558	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000424558	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000424558	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5UTR-3UTR	ENST00000261016	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5UTR-3UTR	ENST00000261016	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5UTR-3UTR	ENST00000261016	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5UTR-3UTR	ENST00000261016	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5UTR-3UTR	ENST00000261016	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000422511	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000422511	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000422511	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000422511	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000422511	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000430574	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000430574	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000430574	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000430574	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000430574	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000261018	ENST00000475249		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000261018	ENST00000452904		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000261018	ENST00000409137		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000261018	ENST00000280295		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000261018	ENST00000409702		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ABI2	chr2	204193354	+	PPP1R1C	chr2	182926169	+
intron-3CDS	ENST00000560386	ENST00000156471		TCGA	LD	ESCA	TCGA-LN-A49V-01A	DPH6	chr15	35830475	-	AQR	chr15	35149307	-
Frame-shit	ENST00000256538	ENST00000156471		TCGA	LD	ESCA	TCGA-LN-A49V-01A	DPH6	chr15	35830475	-	AQR	chr15	35149307	-
Frame-shit	ENST00000440392	ENST00000156471		TCGA	LD	ESCA	TCGA-LN-A49V-01A	DPH6	chr15	35830475	-	AQR	chr15	35149307	-
Frame-shit	ENST00000310614	ENST00000354190		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
Frame-shit	ENST00000310614	ENST00000398492		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000310614	ENST00000227214		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000310614	ENST00000398494		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000310614	ENST00000543085		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-3UTR	ENST00000310614	ENST00000544532		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000310614	ENST00000535129		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-3CDS	ENST00000535529	ENST00000354190		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-3CDS	ENST00000535529	ENST00000398492		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000535529	ENST00000227214		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000535529	ENST00000398494		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000535529	ENST00000543085		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-3UTR	ENST00000535529	ENST00000544532		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000535529	ENST00000535129		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-3CDS	ENST00000411840	ENST00000354190		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-3CDS	ENST00000411840	ENST00000398492		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000411840	ENST00000227214		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000411840	ENST00000398494		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000411840	ENST00000543085		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-3UTR	ENST00000411840	ENST00000544532		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5UTR-5UTR	ENST00000411840	ENST00000535129		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-3CDS	ENST00000398483	ENST00000354190		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-3CDS	ENST00000398483	ENST00000398492		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000398483	ENST00000227214		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000398483	ENST00000398494		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000398483	ENST00000543085		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-3UTR	ENST00000398483	ENST00000544532		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000398483	ENST00000535129		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
Frame-shit	ENST00000542303	ENST00000354190		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
Frame-shit	ENST00000542303	ENST00000398492		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000542303	ENST00000227214		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000542303	ENST00000398494		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000542303	ENST00000543085		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-3UTR	ENST00000542303	ENST00000544532		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
5CDS-5UTR	ENST00000542303	ENST00000535129		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-3CDS	ENST00000314282	ENST00000354190		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-3CDS	ENST00000314282	ENST00000398492		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000314282	ENST00000227214		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000314282	ENST00000398494		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000314282	ENST00000543085		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-3UTR	ENST00000314282	ENST00000544532		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
intron-5UTR	ENST00000314282	ENST00000535129		TCGA	LD	ESCA	TCGA-LN-A49V-01A	MRPL48	chr11	73519395	+	PLEKHB1	chr11	73360057	+
In-frame	ENST00000372564	ENST00000372715		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
5CDS-intron	ENST00000372564	ENST00000483181		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
Frame-shit	ENST00000372559	ENST00000372715		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
5CDS-intron	ENST00000372559	ENST00000483181		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
In-frame	ENST00000372554	ENST00000372715		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
5CDS-intron	ENST00000372554	ENST00000483181		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
In-frame	ENST00000417224	ENST00000372715		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
5CDS-intron	ENST00000417224	ENST00000483181		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
In-frame	ENST00000416629	ENST00000372715		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
5CDS-intron	ENST00000416629	ENST00000483181		TCGA	LD	ESCA	TCGA-LN-A49V-01A	SH3GLB2	chr9	131771385	-	WDR34	chr9	131403218	-
5CDS-5UTR	ENST00000262577	ENST00000430474		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ZC3H3	chr8	144547887	-	LY6H	chr8	144241126	-
5CDS-5UTR	ENST00000262577	ENST00000342752		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ZC3H3	chr8	144547887	-	LY6H	chr8	144241126	-
5CDS-5UTR	ENST00000262577	ENST00000414417		TCGA	LD	ESCA	TCGA-LN-A49V-01A	ZC3H3	chr8	144547887	-	LY6H	chr8	144241126	-
5CDS-5UTR	ENST00000294053	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000294053	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000294053	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000294053	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-5UTR	ENST00000538039	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000538039	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000538039	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000538039	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-5UTR	ENST00000437826	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000437826	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000437826	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000437826	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-5UTR	ENST00000340729	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000340729	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000340729	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000340729	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-5UTR	ENST00000543042	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000543042	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000543042	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000543042	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-5UTR	ENST00000445069	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000445069	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000445069	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000445069	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-5UTR	ENST00000538021	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000538021	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000538021	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000538021	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-5UTR	ENST00000542555	ENST00000267731		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000542555	ENST00000569811		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000542555	ENST00000342314		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000542555	ENST00000438958		TCGA	LD	ESCA	TCGA-LN-A49W-01A	CLPB	chr11	72069924	-	GOLGA8B	chr15	34846157	-
5CDS-3UTR	ENST00000361837	ENST00000397066		TCGA	LD	ESCA	TCGA-LN-A49X-01A	C16orf59	chr16	2512480	+	CCNF	chr16	2508162	+
5CDS-3UTR	ENST00000569496	ENST00000397066		TCGA	LD	ESCA	TCGA-LN-A49X-01A	C16orf59	chr16	2512480	+	CCNF	chr16	2508162	+
5CDS-3UTR	ENST00000563531	ENST00000397066		TCGA	LD	ESCA	TCGA-LN-A49X-01A	C16orf59	chr16	2512480	+	CCNF	chr16	2508162	+
5CDS-3UTR	ENST00000483320	ENST00000397066		TCGA	LD	ESCA	TCGA-LN-A49X-01A	C16orf59	chr16	2512480	+	CCNF	chr16	2508162	+
Frame-shit	ENST00000265085	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000265085	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000265085	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000265085	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000265085	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000265085	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000520867	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000520867	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000520867	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000520867	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000520867	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000520867	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000334035	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000334035	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000334035	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000334035	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000334035	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000334035	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000519835	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000519835	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000519835	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000519835	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000519835	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000519835	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000522336	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000522336	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000522336	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000522336	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000522336	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000522336	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000517880	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
Frame-shit	ENST00000517880	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000517880	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000517880	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000517880	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000517880	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
intron-3CDS	ENST00000519467	ENST00000296444		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
intron-3CDS	ENST00000519467	ENST00000444115		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
intron-intron	ENST00000519467	ENST00000426002		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
intron-intron	ENST00000519467	ENST00000465449		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
intron-intron	ENST00000519467	ENST00000442747		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
intron-intron	ENST00000519467	ENST00000443308		TCGA	LD	ESCA	TCGA-LN-A4A1-01A	CPEB4	chr5	173337607	+	SHISA5	chr3	48520666	-
5UTR-3CDS	ENST00000369042	ENST00000230085		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
5UTR-intron	ENST00000369042	ENST00000426155		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
5UTR-intron	ENST00000369042	ENST00000349379		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
5UTR-intron	ENST00000369042	ENST00000368982		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
intron-3CDS	ENST00000429433	ENST00000230085		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
intron-intron	ENST00000429433	ENST00000426155		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
intron-intron	ENST00000429433	ENST00000349379		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
intron-intron	ENST00000429433	ENST00000368982		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	BEND3	chr6	107436294	-	SNX3	chr6	108544249	-
Frame-shit	ENST00000392474	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000538733	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000337174	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000347034	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000324774	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000545538	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000545538	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000412367	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000404169	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000402834	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000446440	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000392473	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000535524	ENST00000377069		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000542973		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000377071		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000536437		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000538046		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	LD	ESCA	TCGA-LN-A4A2-01A	CAMKK2	chr12	121706441	-	KDM2B	chr12	121891147	-
In-frame	ENST00000369705	ENST00000369747		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000369705	ENST00000503942		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000369705	ENST00000369745		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
Frame-shit	ENST00000541327	ENST00000369747		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000541327	ENST00000503942		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000541327	ENST00000369745		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
Frame-shit	ENST00000543031	ENST00000369747		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000543031	ENST00000503942		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000543031	ENST00000369745		TCGA	LD	ESCA	TCGA-LN-A4A9-01A	ME1	chr6	84025029	-	UBE3D	chr6	83667169	-
In-frame	ENST00000399336	ENST00000399410		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000399336	ENST00000349029		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000399336	ENST00000351154		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000399336	ENST00000399408		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000399336	ENST00000345148		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000399336	ENST00000346370		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
5CDS-intron	ENST00000399336	ENST00000576557		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000263012	ENST00000399410		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000263012	ENST00000349029		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000263012	ENST00000351154		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000263012	ENST00000399408		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000263012	ENST00000345148		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000263012	ENST00000346370		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
5CDS-intron	ENST00000263012	ENST00000576557		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000538468	ENST00000399410		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000538468	ENST00000349029		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000538468	ENST00000351154		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000538468	ENST00000399408		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000538468	ENST00000345148		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
In-frame	ENST00000538468	ENST00000346370		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
5CDS-intron	ENST00000538468	ENST00000576557		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-3CDS	ENST00000572932	ENST00000399410		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-3CDS	ENST00000572932	ENST00000349029		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-3CDS	ENST00000572932	ENST00000351154		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-3CDS	ENST00000572932	ENST00000399408		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-3CDS	ENST00000572932	ENST00000345148		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-3CDS	ENST00000572932	ENST00000346370		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-intron	ENST00000572932	ENST00000576557		TCGA	LD	ESCA	TCGA-LN-A4MQ-01A	NOMO3	chr16	16364685	+	ABCC1	chr16	16138307	+
intron-intron	ENST00000409532	ENST00000441339		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000409532	ENST00000308946		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000409532	ENST00000535407		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000409532	ENST00000541137		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264107	ENST00000441339		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264107	ENST00000308946		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264107	ENST00000535407		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000264107	ENST00000541137		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000343713	ENST00000441339		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000343713	ENST00000308946		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000343713	ENST00000535407		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000343713	ENST00000541137		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264106	ENST00000441339		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264106	ENST00000308946		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264106	ENST00000535407		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000264106	ENST00000541137		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000375221	ENST00000441339		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000375221	ENST00000308946		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000375221	ENST00000535407		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000375221	ENST00000541137		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409080	ENST00000441339		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409080	ENST00000308946		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000409080	ENST00000535407		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000409080	ENST00000541137		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	ITGA6	chr2	173292698	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000264932	ENST00000283426		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SDHA	chr5	233760	+	PLEKHG4B	chr5	139598	+
5CDS-intron	ENST00000504309	ENST00000283426		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SDHA	chr5	233760	+	PLEKHG4B	chr5	139598	+
5CDS-intron	ENST00000510361	ENST00000283426		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SDHA	chr5	233760	+	PLEKHG4B	chr5	139598	+
intron-intron	ENST00000507522	ENST00000283426		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SDHA	chr5	233760	+	PLEKHG4B	chr5	139598	+
5UTR-3CDS	ENST00000357395	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000357395	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000357395	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000358025	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000358025	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000358025	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000344113	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000344113	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000344113	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000341472	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000341472	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000341472	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000356081	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000356081	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5UTR-3CDS	ENST00000356081	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000554584	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000554584	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000554584	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000555002	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000555002	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000555002	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000394768	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000394768	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000394768	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000556725	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000556725	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000556725	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000553455	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000553455	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000553455	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000555022	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000555022	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000555022	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000554805	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000554805	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000554805	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000458046	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000458046	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000458046	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000441438	ENST00000308317		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000441438	ENST00000396249		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
intron-3CDS	ENST00000441438	ENST00000250379		TCGA	LD	ESCA	TCGA-LN-A5U6-01A	SYNE2	chr14	64319861	+	GEMIN2	chr14	39584033	+
5CDS-5UTR	ENST00000303910	ENST00000275162		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	HIST1H2AE	chr6	26217281	+	CLVS2	chr6	123318457	+
5CDS-intron	ENST00000303910	ENST00000368438		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	HIST1H2AE	chr6	26217281	+	CLVS2	chr6	123318457	+
5CDS-5UTR	ENST00000233146	ENST00000405271		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
5CDS-intron	ENST00000233146	ENST00000263735		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
5CDS-5UTR	ENST00000543555	ENST00000405271		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
5CDS-intron	ENST00000543555	ENST00000263735		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
5CDS-5UTR	ENST00000406134	ENST00000405271		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
5CDS-intron	ENST00000406134	ENST00000263735		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
intron-5UTR	ENST00000461394	ENST00000405271		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
intron-intron	ENST00000461394	ENST00000263735		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47596067	+
5UTR-3CDS	ENST00000318833	ENST00000471595		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000318833	ENST00000478469		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000318833	ENST00000251654		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000318833	ENST00000483687		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000318833	ENST00000490504		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-3CDS	ENST00000318833	ENST00000466072		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000318833	ENST00000482086		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000318833	ENST00000468777		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000318833	ENST00000462637		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000318833	ENST00000469217		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
5UTR-intron	ENST00000318833	ENST00000474833		TCGA	LD	ESCA	TCGA-LN-A5U7-01A	ZFP3	chr17	4981870	+	PCCB	chr3	135974698	+
Frame-shit	ENST00000323851	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
5CDS-5UTR	ENST00000323851	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
Frame-shit	ENST00000354944	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
5CDS-5UTR	ENST00000354944	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-3CDS	ENST00000521414	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-5UTR	ENST00000521414	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
5UTR-3CDS	ENST00000537882	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
5UTR-5UTR	ENST00000537882	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
Frame-shit	ENST00000414097	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
5CDS-5UTR	ENST00000414097	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-3CDS	ENST00000518176	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-5UTR	ENST00000518176	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-3CDS	ENST00000522476	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-5UTR	ENST00000522476	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-3CDS	ENST00000518066	ENST00000263408		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
intron-5UTR	ENST00000518066	ENST00000509186		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	NDRG1	chr8	134292477	-	C9	chr5	39342300	-
Frame-shit	ENST00000438447	ENST00000523207		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PDZD2	chr5	32053989	+	KCNB2	chr8	73848170	+
Frame-shit	ENST00000282493	ENST00000523207		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PDZD2	chr5	32053989	+	KCNB2	chr8	73848170	+
intron-3CDS	ENST00000513490	ENST00000523207		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PDZD2	chr5	32053989	+	KCNB2	chr8	73848170	+
5CDS-3UTR	ENST00000291547	ENST00000460259		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
5CDS-3UTR	ENST00000291547	ENST00000354250		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
5CDS-3UTR	ENST00000291547	ENST00000340344		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
5CDS-3UTR	ENST00000432907	ENST00000460259		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
5CDS-3UTR	ENST00000432907	ENST00000354250		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
5CDS-3UTR	ENST00000432907	ENST00000340344		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000607150	ENST00000460259		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000607150	ENST00000354250		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000607150	ENST00000340344		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	PKNOX1	chr21	44445057	+	NDUFV3	chr21	44328974	+
5UTR-3CDS	ENST00000464506	ENST00000361306		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	RAB9A	chrX	13722021	+	EGFL6	chrX	13635849	+
5UTR-3CDS	ENST00000464506	ENST00000380602		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	RAB9A	chrX	13722021	+	EGFL6	chrX	13635849	+
5UTR-intron	ENST00000464506	ENST00000473826		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	RAB9A	chrX	13722021	+	EGFL6	chrX	13635849	+
intron-3CDS	ENST00000243325	ENST00000361306		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	RAB9A	chrX	13722021	+	EGFL6	chrX	13635849	+
intron-3CDS	ENST00000243325	ENST00000380602		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	RAB9A	chrX	13722021	+	EGFL6	chrX	13635849	+
intron-intron	ENST00000243325	ENST00000473826		TCGA	LD	ESCA	TCGA-LN-A7HV-01A	RAB9A	chrX	13722021	+	EGFL6	chrX	13635849	+
5CDS-3UTR	ENST00000242839	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000242839	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000242839	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-3UTR	ENST00000400366	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000400366	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000400366	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-3UTR	ENST00000344297	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000344297	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000344297	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-3UTR	ENST00000400370	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000400370	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000400370	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-3UTR	ENST00000448424	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000448424	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000448424	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-3UTR	ENST00000418097	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000418097	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000418097	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000417240	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000417240	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000417240	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000482841	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000482841	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000482841	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000542656	ENST00000477333		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000542656	ENST00000539231		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000542656	ENST00000377687		TCGA	LD	ESCA	TCGA-LN-A7HX-01A	ATP7B	chr13	52585423	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000215832	ENST00000450651		TCGA	LD	ESCA	TCGA-LN-A7HY-01A	MAPK1	chr22	22221612	-	PI4KAP2	chr22	21827694	-
5CDS-5UTR	ENST00000398822	ENST00000450651		TCGA	LD	ESCA	TCGA-LN-A7HY-01A	MAPK1	chr22	22221612	-	PI4KAP2	chr22	21827694	-
5CDS-5UTR	ENST00000544786	ENST00000450651		TCGA	LD	ESCA	TCGA-LN-A7HY-01A	MAPK1	chr22	22221612	-	PI4KAP2	chr22	21827694	-
intron-5UTR	ENST00000491588	ENST00000450651		TCGA	LD	ESCA	TCGA-LN-A7HY-01A	MAPK1	chr22	22221612	-	PI4KAP2	chr22	21827694	-
Frame-shit	ENST00000181839	ENST00000403058		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000181839	ENST00000518318		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000181839	ENST00000517348		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000181839	ENST00000559001		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000181839	ENST00000464276		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000340829	ENST00000403058		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000340829	ENST00000518318		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000340829	ENST00000517348		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000340829	ENST00000559001		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000340829	ENST00000464276		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
3UTR-3CDS	ENST00000484589	ENST00000403058		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
3UTR-3CDS	ENST00000484589	ENST00000518318		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
3UTR-intron	ENST00000484589	ENST00000517348		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
3UTR-intron	ENST00000484589	ENST00000559001		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
3UTR-intron	ENST00000484589	ENST00000464276		TCGA	LD	ESCA	TCGA-LN-A8I0-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39472676	+
3UTR-5UTR	ENST00000414209	ENST00000407599		TCGA	LD	ESCA	TCGA-LN-A8I1-01A	JPX	chrX	73164497	+	GAGE10	chrX	49161331	+
5CDS-5UTR	ENST00000255078	ENST00000540367		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000255078	ENST00000376618		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000255078	ENST00000265641		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000255078	ENST00000539743		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000255078	ENST00000537756		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000255078	ENST00000538994		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000539224	ENST00000540367		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000539224	ENST00000376618		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000539224	ENST00000265641		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000539224	ENST00000539743		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-intron	ENST00000539224	ENST00000537756		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-intron	ENST00000539224	ENST00000538994		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000541229	ENST00000540367		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000541229	ENST00000376618		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000541229	ENST00000265641		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000541229	ENST00000539743		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-intron	ENST00000541229	ENST00000537756		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
intron-intron	ENST00000541229	ENST00000538994		TCGA	LD	ESCA	TCGA-LN-A9FO-01A	IGHMBP2	chr11	68685351	+	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000378609	ENST00000374515		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	GNB1	chr1	1721834	-	TXN	chr9	113013144	-
5CDS-intron	ENST00000378609	ENST00000374517		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	GNB1	chr1	1721834	-	TXN	chr9	113013144	-
5CDS-intron	ENST00000378609	ENST00000487892		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	GNB1	chr1	1721834	-	TXN	chr9	113013144	-
intron-intron	ENST00000472614	ENST00000374515		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	GNB1	chr1	1721834	-	TXN	chr9	113013144	-
intron-intron	ENST00000472614	ENST00000374517		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	GNB1	chr1	1721834	-	TXN	chr9	113013144	-
intron-intron	ENST00000472614	ENST00000487892		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	GNB1	chr1	1721834	-	TXN	chr9	113013144	-
In-frame	ENST00000374515	ENST00000378609		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	TXN	chr9	113007058	-	GNB1	chr1	1720708	-
5CDS-intron	ENST00000374515	ENST00000472614		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	TXN	chr9	113007058	-	GNB1	chr1	1720708	-
In-frame	ENST00000374517	ENST00000378609		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	TXN	chr9	113007058	-	GNB1	chr1	1720708	-
5CDS-intron	ENST00000374517	ENST00000472614		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	TXN	chr9	113007058	-	GNB1	chr1	1720708	-
5UTR-3CDS	ENST00000487892	ENST00000378609		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	TXN	chr9	113007058	-	GNB1	chr1	1720708	-
5UTR-intron	ENST00000487892	ENST00000472614		TCGA	LD	ESCA	TCGA-LN-A9FR-01A	TXN	chr9	113007058	-	GNB1	chr1	1720708	-
5CDS-5UTR	ENST00000336308	ENST00000346213		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000336308	ENST00000393860		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000336308	ENST00000547517		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
3UTR-5UTR	ENST00000578232	ENST00000346213		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
3UTR-5UTR	ENST00000578232	ENST00000393860		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
3UTR-5UTR	ENST00000578232	ENST00000547517		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000544210	ENST00000346213		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000544210	ENST00000393860		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000544210	ENST00000547517		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000394250	ENST00000346213		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000394250	ENST00000393860		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000394250	ENST00000547517		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000580611	ENST00000346213		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000580611	ENST00000393860		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
5CDS-5UTR	ENST00000580611	ENST00000547517		TCGA	LD	ESCA	TCGA-M9-A5M8-01A	STARD3	chr17	37810003	+	RAB5C	chr17	40282608	-
In-frame	ENST00000262995	ENST00000506140		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262995	ENST00000515571		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262995	ENST00000382599		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262995	ENST00000507294		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000262995	ENST00000314348		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000262995	ENST00000335585		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262994	ENST00000506140		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262994	ENST00000515571		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262994	ENST00000382599		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000262994	ENST00000507294		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000262994	ENST00000314348		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000262994	ENST00000335585		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000505913	ENST00000506140		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000505913	ENST00000515571		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000505913	ENST00000382599		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
In-frame	ENST00000505913	ENST00000507294		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000505913	ENST00000314348		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000505913	ENST00000335585		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
intron-3CDS	ENST00000515388	ENST00000506140		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
intron-3CDS	ENST00000515388	ENST00000515571		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
intron-3CDS	ENST00000515388	ENST00000382599		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
intron-3CDS	ENST00000515388	ENST00000507294		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
intron-5UTR	ENST00000515388	ENST00000314348		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
intron-5UTR	ENST00000515388	ENST00000335585		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	GAB1	chr4	144361535	+	PPP2R2C	chr4	6349737	-
5CDS-5UTR	ENST00000297423	ENST00000441964		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000297423	ENST00000344697		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000518074	ENST00000441964		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000518074	ENST00000344697		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000541342	ENST00000441964		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000541342	ENST00000344697		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
3UTR-5UTR	ENST00000521214	ENST00000441964		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
3UTR-5UTR	ENST00000521214	ENST00000344697		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000517693	ENST00000441964		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000517693	ENST00000344697		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000518060	ENST00000441964		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000518060	ENST00000344697		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	SPIDR	chr8	48203726	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000258399	ENST00000258412		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000258399	ENST00000445635		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000258399	ENST00000396809		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000258399	ENST00000444881		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000454775	ENST00000258412		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000454775	ENST00000445635		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000454775	ENST00000396809		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000454775	ENST00000444881		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000415516	ENST00000258412		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000415516	ENST00000445635		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000415516	ENST00000396809		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000415516	ENST00000444881		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000418019	ENST00000258412		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000418019	ENST00000445635		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000418019	ENST00000396809		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000418019	ENST00000444881		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000338465	ENST00000258412		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-intron	ENST00000338465	ENST00000445635		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000338465	ENST00000396809		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000338465	ENST00000444881		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000475553	ENST00000258412		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-intron	ENST00000475553	ENST00000445635		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000475553	ENST00000396809		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000475553	ENST00000444881		TCGA	LD	ESCA	TCGA-Q9-A6FU-01A	USP37	chr2	219339353	-	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000527001	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527001	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000257831	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000450654	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000530286	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000533754	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000531728	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000531794	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000525528		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000439476		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000533131		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000395986		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000418212		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000533246		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000356660		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000530861		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000438929		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000420794		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000395983		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000395980		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000584049		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000532997		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000395981		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000395978		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000525950		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
intron-5UTR	ENST00000527935	ENST00000314915		TCGA	LD	ESCA	TCGA-R6-A6DN-01B	EHF	chr11	34673153	+	BDNF	chr11	27680132	-
3UTR-3CDS	ENST00000532456	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
3UTR-5UTR	ENST00000532456	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
3UTR-5UTR	ENST00000532456	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
3UTR-5UTR	ENST00000532456	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
3UTR-5UTR	ENST00000532456	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5UTR-3CDS	ENST00000539648	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5UTR-5UTR	ENST00000539648	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5UTR-5UTR	ENST00000539648	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5UTR-5UTR	ENST00000539648	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5UTR-5UTR	ENST00000539648	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
Frame-shit	ENST00000528499	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000528499	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000528499	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000528499	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000528499	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
Frame-shit	ENST00000263574	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000263574	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000263574	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000263574	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000263574	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
Frame-shit	ENST00000345598	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000345598	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000345598	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000345598	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000345598	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
Frame-shit	ENST00000338167	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000338167	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000338167	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000338167	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000338167	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-3CDS	ENST00000278756	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000278756	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000278756	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000278756	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000278756	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-3CDS	ENST00000543137	ENST00000524381		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000543137	ENST00000529038		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000543137	ENST00000331898		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000543137	ENST00000374778		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000543137	ENST00000541867		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	APLP2	chr11	129939977	+	OPCML	chr11	132307253	-
5UTR-5UTR	ENST00000337195	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
5UTR-5UTR	ENST00000337195	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000531469	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000531469	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
5UTR-5UTR	ENST00000494626	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
5UTR-5UTR	ENST00000494626	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000411419	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000411419	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
5UTR-5UTR	ENST00000476817	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
5UTR-5UTR	ENST00000476817	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000309035	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000309035	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000334808	ENST00000445873		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-5UTR	ENST00000334808	ENST00000425505		TCGA	LD	ESCA	TCGA-R6-A6KZ-01A	CTBP2	chr10	126848888	-	TLX1NB	chr10	102886855	-
intron-3CDS	ENST00000408388	ENST00000595437		TCGA	LD	ESCA	TCGA-R6-A6L6-01B	PVT1	chr8	128806980	+	FARP1	chr13	99076826	+
intron-3CDS	ENST00000408388	ENST00000376586		TCGA	LD	ESCA	TCGA-R6-A6L6-01B	PVT1	chr8	128806980	+	FARP1	chr13	99076826	+
intron-3CDS	ENST00000408388	ENST00000319562		TCGA	LD	ESCA	TCGA-R6-A6L6-01B	PVT1	chr8	128806980	+	FARP1	chr13	99076826	+
intron-intron	ENST00000408388	ENST00000376581		TCGA	LD	ESCA	TCGA-R6-A6L6-01B	PVT1	chr8	128806980	+	FARP1	chr13	99076826	+
intron-intron	ENST00000408388	ENST00000593990		TCGA	LD	ESCA	TCGA-R6-A6L6-01B	PVT1	chr8	128806980	+	FARP1	chr13	99076826	+
Frame-shit	ENST00000526343	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000526343	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000526343	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000282441	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000282441	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000282441	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000537274	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000537274	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000537274	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000345877	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000345877	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000345877	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000531439	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000531439	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000531439	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000524575	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000524575	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
Frame-shit	ENST00000524575	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000528834	ENST00000455332		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000528834	ENST00000260187		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
intron-3CDS	ENST00000528834	ENST00000525735		TCGA	LD	ESCA	TCGA-R6-A6XQ-01B	YAP1	chr11	101985125	+	USP2	chr11	119230944	-
5CDS-5UTR	ENST00000413366	ENST00000533854		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	PRKCA	chr17	64302245	+	CACNG5	chr17	64873348	+
5CDS-intron	ENST00000413366	ENST00000169565		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	PRKCA	chr17	64302245	+	CACNG5	chr17	64873348	+
5CDS-intron	ENST00000413366	ENST00000307139		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	PRKCA	chr17	64302245	+	CACNG5	chr17	64873348	+
3UTR-5UTR	ENST00000583361	ENST00000533854		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	PRKCA	chr17	64302245	+	CACNG5	chr17	64873348	+
3UTR-intron	ENST00000583361	ENST00000169565		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	PRKCA	chr17	64302245	+	CACNG5	chr17	64873348	+
3UTR-intron	ENST00000583361	ENST00000307139		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	PRKCA	chr17	64302245	+	CACNG5	chr17	64873348	+
5CDS-5UTR	ENST00000356388	ENST00000494188		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000409892		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000409784		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000398529		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000409751		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000260638		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000356388	ENST00000356214		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000494188		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000409892		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000409784		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000398529		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000409751		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000260638		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000443619	ENST00000356214		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000494188		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000409892		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000409784		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000398529		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000409751		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000260638		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000474228	ENST00000356214		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPRED2	chr2	65659096	-	RAB1A	chr2	65331940	-
5CDS-intron	ENST00000358161	ENST00000372994		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
5CDS-intron	ENST00000358161	ENST00000492588		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
5CDS-intron	ENST00000372739	ENST00000372994		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
5CDS-intron	ENST00000372739	ENST00000492588		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
5CDS-intron	ENST00000372731	ENST00000372994		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
5CDS-intron	ENST00000372731	ENST00000492588		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
intron-intron	ENST00000475367	ENST00000372994		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
intron-intron	ENST00000475367	ENST00000492588		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	SPTAN1	chr9	131378005	+	C9orf16	chr9	130924126	+
5UTR-intron	ENST00000545826	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000545826	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000545826	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000513237	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000513237	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000513237	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000540549	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000540549	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000540549	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000380013	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000380013	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000380013	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
intron-intron	ENST00000305737	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
intron-intron	ENST00000305737	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
intron-intron	ENST00000305737	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000394764	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000394764	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000394764	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
3UTR-intron	ENST00000504042	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
3UTR-intron	ENST00000504042	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
3UTR-intron	ENST00000504042	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000413648	ENST00000420470		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000413648	ENST00000508036		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
5UTR-intron	ENST00000413648	ENST00000265154		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET2	chr4	106068136	+	ARHGEF38	chr4	106626471	+
intron-3CDS	ENST00000409262	ENST00000409731		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET3	chr2	74230293	+	ACTG2	chr2	74140612	+
intron-3CDS	ENST00000409262	ENST00000345517		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET3	chr2	74230293	+	ACTG2	chr2	74140612	+
intron-intron	ENST00000409262	ENST00000409918		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET3	chr2	74230293	+	ACTG2	chr2	74140612	+
intron-intron	ENST00000409262	ENST00000409624		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TET3	chr2	74230293	+	ACTG2	chr2	74140612	+
5UTR-3CDS	ENST00000361906	ENST00000381669		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TMEM184B	chr22	38668890	-	BAIAP2L2	chr22	38483271	-
5UTR-intron	ENST00000361906	ENST00000332536		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TMEM184B	chr22	38668890	-	BAIAP2L2	chr22	38483271	-
intron-3CDS	ENST00000361684	ENST00000381669		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TMEM184B	chr22	38668890	-	BAIAP2L2	chr22	38483271	-
intron-intron	ENST00000361684	ENST00000332536		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TMEM184B	chr22	38668890	-	BAIAP2L2	chr22	38483271	-
intron-3CDS	ENST00000504337	ENST00000381669		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TMEM184B	chr22	38668890	-	BAIAP2L2	chr22	38483271	-
intron-intron	ENST00000504337	ENST00000332536		TCGA	LD	ESCA	TCGA-R6-A6Y0-01B	TMEM184B	chr22	38668890	-	BAIAP2L2	chr22	38483271	-
5CDS-5UTR	ENST00000588240	ENST00000490126		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000588240	ENST00000225410		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000588240	ENST00000588253		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000588240	ENST00000592616		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-intron	ENST00000588240	ENST00000590858		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5UTR-5UTR	ENST00000592237	ENST00000490126		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5UTR-5UTR	ENST00000592237	ENST00000225410		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5UTR-5UTR	ENST00000592237	ENST00000588253		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5UTR-5UTR	ENST00000592237	ENST00000592616		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5UTR-intron	ENST00000592237	ENST00000590858		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000311979	ENST00000490126		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000311979	ENST00000225410		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000311979	ENST00000588253		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-5UTR	ENST00000311979	ENST00000592616		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
5CDS-intron	ENST00000311979	ENST00000590858		TCGA	LD	ESCA	TCGA-R6-A6Y2-01B	TAF15	chr17	34136580	+	ZNHIT3	chr17	34848657	+
intron-3CDS	ENST00000383777	ENST00000435459		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000383777	ENST00000383787		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000383777	ENST00000383785		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000383777	ENST00000383788		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000383777	ENST00000603752		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000383777	ENST00000383781		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000383777	ENST00000603808		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000383777	ENST00000383786		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
Frame-shit	ENST00000399451	ENST00000435459		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
Frame-shit	ENST00000399451	ENST00000383787		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
In-frame	ENST00000399451	ENST00000383785		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
Frame-shit	ENST00000399451	ENST00000383788		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
5CDS-intron	ENST00000399451	ENST00000603752		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
5CDS-intron	ENST00000399451	ENST00000383781		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
5CDS-intron	ENST00000399451	ENST00000603808		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
5CDS-intron	ENST00000399451	ENST00000383786		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000497037	ENST00000435459		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000497037	ENST00000383787		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000497037	ENST00000383785		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-3CDS	ENST00000497037	ENST00000383788		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000497037	ENST00000603752		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000497037	ENST00000383781		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000497037	ENST00000603808		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
intron-intron	ENST00000497037	ENST00000383786		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ANKRD28	chr3	15900884	-	COLQ	chr3	15531144	-
5UTR-intron	ENST00000584601	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000584601	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000406381	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000541774	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000445658	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540147	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584450	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000269571	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
5UTR-intron	ENST00000578199	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000540042	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000346872		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000394189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000439167		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000535189		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377944		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377945		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377952		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377958		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000346243		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000350532		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000351680		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000467757		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000439016		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000583368		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ERBB2	chr17	37849578	+	IKZF3	chr17	37914218	-
In-frame	ENST00000319349	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000319349	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000319349	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000393664	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000393664	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000393664	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000538265	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000538265	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000538265	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000545954	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000545954	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000545954	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000545089	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000545089	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000545089	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000591713	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000591713	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
Frame-shit	ENST00000591713	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
intron-3CDS	ENST00000586826	ENST00000591247		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
intron-3CDS	ENST00000586826	ENST00000293406		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
intron-3CDS	ENST00000586826	ENST00000585388		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	ETV4	chr17	41610042	-	LSM12	chr17	42141302	-
In-frame	ENST00000455833	ENST00000375217		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
In-frame	ENST00000455833	ENST00000375226		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
In-frame	ENST00000455833	ENST00000375267		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
In-frame	ENST00000455833	ENST00000375254		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
5CDS-intron	ENST00000455833	ENST00000375225		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
5CDS-intron	ENST00000455833	ENST00000429347		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
5CDS-intron	ENST00000455833	ENST00000375224		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
5CDS-intron	ENST00000455833	ENST00000543981		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
5CDS-intron	ENST00000455833	ENST00000467272		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
5CDS-intron	ENST00000455833	ENST00000375218		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	IFFO2	chr1	19243397	-	UBR4	chr1	19528309	-
Frame-shit	ENST00000359246	ENST00000427277		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
Frame-shit	ENST00000359246	ENST00000297954		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
Frame-shit	ENST00000359246	ENST00000395475		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-5UTR	ENST00000359246	ENST00000356055		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-5UTR	ENST00000359246	ENST00000349097		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-5UTR	ENST00000359246	ENST00000395477		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-intron	ENST00000359246	ENST00000471076		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
Frame-shit	ENST00000375376	ENST00000427277		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
Frame-shit	ENST00000375376	ENST00000297954		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
Frame-shit	ENST00000375376	ENST00000395475		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-5UTR	ENST00000375376	ENST00000356055		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-5UTR	ENST00000375376	ENST00000349097		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-5UTR	ENST00000375376	ENST00000395477		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5CDS-intron	ENST00000375376	ENST00000471076		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	PHF2	chr9	96339153	+	WNK2	chr9	96000515	+
5UTR-3CDS	ENST00000393328	ENST00000323084		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000393328	ENST00000397916		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000393331	ENST00000323084		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000393331	ENST00000397916		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000347630	ENST00000323084		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000347630	ENST00000397916		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000504102	ENST00000323084		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000504102	ENST00000397916		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
intron-3CDS	ENST00000503676	ENST00000323084		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
intron-3CDS	ENST00000503676	ENST00000397916		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000513080	ENST00000323084		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
5UTR-3CDS	ENST00000513080	ENST00000397916		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SPOP	chr17	47755295	-	TSPEAR	chr21	45953806	-
In-frame	ENST00000393651	ENST00000356362		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
In-frame	ENST00000393651	ENST00000469408		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000357311	ENST00000356362		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000357311	ENST00000469408		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000489828	ENST00000356362		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000489828	ENST00000469408		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000493638	ENST00000356362		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000493638	ENST00000469408		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	SRPK2	chr7	105029095	-	PUS7	chr7	105122887	-
3UTR-3CDS	ENST00000493499	ENST00000324306		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	STAG3L5P	chr7	99935887	+	ZKSCAN1	chr7	99627872	+
3UTR-3CDS	ENST00000493499	ENST00000426572		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	STAG3L5P	chr7	99935887	+	ZKSCAN1	chr7	99627872	+
3UTR-3CDS	ENST00000493499	ENST00000535170		TCGA	LD	ESCA	TCGA-R6-A8W5-01B	STAG3L5P	chr7	99935887	+	ZKSCAN1	chr7	99627872	+
3UTR-5UTR	ENST00000369331	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369331	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369331	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369331	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369321	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369321	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369321	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369321	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000345633	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000345633	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000345633	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000345633	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369318	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369318	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369318	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369318	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369315	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369315	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-intron	ENST00000369315	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
3UTR-5UTR	ENST00000369315	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-5UTR	ENST00000452490	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-intron	ENST00000452490	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-intron	ENST00000452490	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-5UTR	ENST00000452490	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-5UTR	ENST00000468790	ENST00000287022		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-intron	ENST00000468790	ENST00000517523		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-intron	ENST00000468790	ENST00000518406		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
intron-5UTR	ENST00000468790	ENST00000523920		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	CASP7	chr10	115490446	+	UQCRB	chr8	97247765	-
Frame-shit	ENST00000462138	ENST00000366955		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
5CDS-intron	ENST00000462138	ENST00000467765		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
Frame-shit	ENST00000423525	ENST00000366955		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
5CDS-intron	ENST00000423525	ENST00000467765		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
intron-3CDS	ENST00000461139	ENST00000366955		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
intron-intron	ENST00000461139	ENST00000467765		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
Frame-shit	ENST00000423516	ENST00000366955		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
5CDS-intron	ENST00000423516	ENST00000467765		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
Frame-shit	ENST00000296289	ENST00000366955		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
5CDS-intron	ENST00000296289	ENST00000467765		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	TKT	chr3	53274267	-	CENPF	chr1	214832214	+
intron-5UTR	ENST00000607252	ENST00000373060		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
intron-5UTR	ENST00000607252	ENST00000373063		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
intron-5UTR	ENST00000607252	ENST00000409208		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
intron-5UTR	ENST00000607252	ENST00000373057		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
intron-5UTR	ENST00000607252	ENST00000307972		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000318149	ENST00000373060		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000318149	ENST00000373063		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000318149	ENST00000409208		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000318149	ENST00000373057		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000318149	ENST00000307972		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000361428	ENST00000373060		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000361428	ENST00000373063		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000361428	ENST00000409208		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000361428	ENST00000373057		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
5CDS-5UTR	ENST00000361428	ENST00000307972		TCGA	LD	ESCA	TCGA-R6-A8W8-01B	ZNF318	chr6	43316062	-	FOXP4	chr6	41533483	+
Frame-shit	ENST00000327697	ENST00000471660		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
Frame-shit	ENST00000327697	ENST00000263780		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
Frame-shit	ENST00000327697	ENST00000494980		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
5CDS-3UTR	ENST00000327697	ENST00000472024		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000432042	ENST00000471660		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000432042	ENST00000263780		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000432042	ENST00000494980		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3UTR	ENST00000432042	ENST00000472024		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
Frame-shit	ENST00000433785	ENST00000471660		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
Frame-shit	ENST00000433785	ENST00000263780		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
Frame-shit	ENST00000433785	ENST00000494980		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
5CDS-3UTR	ENST00000433785	ENST00000472024		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000497099	ENST00000471660		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000497099	ENST00000263780		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000497099	ENST00000494980		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3UTR	ENST00000497099	ENST00000472024		TCGA	LD	ESCA	TCGA-R6-A8WG-01A	RNF123	chr3	49751607	+	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000285093	ENST00000285039		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000285093	ENST00000324581		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000285093	ENST00000592688		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-intron	ENST00000285093	ENST00000587895		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000589432	ENST00000285039		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000589432	ENST00000324581		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000589432	ENST00000592688		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-intron	ENST00000589432	ENST00000587895		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000587994	ENST00000285039		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000587994	ENST00000324581		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-3CDS	ENST00000587994	ENST00000592688		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
intron-intron	ENST00000587994	ENST00000587895		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ACAA2	chr18	47310249	-	MYO5B	chr18	47352993	-
Frame-shit	ENST00000357668	ENST00000445105		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
Frame-shit	ENST00000357668	ENST00000264730		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
Frame-shit	ENST00000357668	ENST00000454309		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
Frame-shit	ENST00000357668	ENST00000450716		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
5CDS-intron	ENST00000357668	ENST00000430714		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
5CDS-intron	ENST00000357668	ENST00000466144		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
In-frame	ENST00000518721	ENST00000445105		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
In-frame	ENST00000518721	ENST00000264730		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
In-frame	ENST00000518721	ENST00000454309		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
In-frame	ENST00000518721	ENST00000450716		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
5CDS-intron	ENST00000518721	ENST00000430714		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
5CDS-intron	ENST00000518721	ENST00000466144		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
intron-3CDS	ENST00000520625	ENST00000445105		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
intron-3CDS	ENST00000520625	ENST00000264730		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
intron-3CDS	ENST00000520625	ENST00000454309		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
intron-3CDS	ENST00000520625	ENST00000450716		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
intron-intron	ENST00000520625	ENST00000430714		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
intron-intron	ENST00000520625	ENST00000466144		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	ASAP1	chr8	131370263	-	FGF12	chr3	192078327	-
In-frame	ENST00000337198	ENST00000507754		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
In-frame	ENST00000337198	ENST00000252576		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
In-frame	ENST00000337198	ENST00000503283		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
In-frame	ENST00000337198	ENST00000512771		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
In-frame	ENST00000337198	ENST00000428459		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000347770	ENST00000507754		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000347770	ENST00000252576		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000347770	ENST00000503283		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000347770	ENST00000512771		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000347770	ENST00000428459		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000522311	ENST00000507754		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000522311	ENST00000252576		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000522311	ENST00000503283		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000522311	ENST00000512771		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000522311	ENST00000428459		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	AZIN1	chr8	103848484	-	NDUFA13	chr19	19636991	+
5CDS-5UTR	ENST00000308482	ENST00000404910		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000308482	ENST00000254661		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000308482	ENST00000409726		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000308482	ENST00000403885		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
intron-5UTR	ENST00000468950	ENST00000404910		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
intron-5UTR	ENST00000468950	ENST00000254661		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
intron-5UTR	ENST00000468950	ENST00000409726		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
intron-5UTR	ENST00000468950	ENST00000403885		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000289175	ENST00000404910		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000289175	ENST00000254661		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000289175	ENST00000409726		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000289175	ENST00000403885		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000244815	ENST00000404910		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000244815	ENST00000254661		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000244815	ENST00000409726		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000244815	ENST00000403885		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000392000	ENST00000404910		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000392000	ENST00000254661		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000392000	ENST00000409726		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
5CDS-5UTR	ENST00000392000	ENST00000403885		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	LRRFIP1	chr2	238668848	+	RAMP1	chr2	238785866	+
Frame-shit	ENST00000507754	ENST00000337198		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000507754	ENST00000347770		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
5CDS-5UTR	ENST00000507754	ENST00000522311		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000252576	ENST00000337198		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000252576	ENST00000347770		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
5CDS-5UTR	ENST00000252576	ENST00000522311		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000503283	ENST00000337198		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000503283	ENST00000347770		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
5CDS-5UTR	ENST00000503283	ENST00000522311		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000512771	ENST00000337198		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000512771	ENST00000347770		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
5CDS-5UTR	ENST00000512771	ENST00000522311		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000428459	ENST00000337198		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
Frame-shit	ENST00000428459	ENST00000347770		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
5CDS-5UTR	ENST00000428459	ENST00000522311		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	NDUFA13	chr19	19627141	+	AZIN1	chr8	103852051	-
5CDS-3UTR	ENST00000377595	ENST00000477333		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	UCHL3	chr13	76135017	+	KLF5	chr13	73636247	+
5CDS-3UTR	ENST00000377595	ENST00000539231		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	UCHL3	chr13	76135017	+	KLF5	chr13	73636247	+
5CDS-3UTR	ENST00000377595	ENST00000377687		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	UCHL3	chr13	76135017	+	KLF5	chr13	73636247	+
intron-3UTR	ENST00000606347	ENST00000477333		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	UCHL3	chr13	76135017	+	KLF5	chr13	73636247	+
intron-3UTR	ENST00000606347	ENST00000539231		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	UCHL3	chr13	76135017	+	KLF5	chr13	73636247	+
intron-3UTR	ENST00000606347	ENST00000377687		TCGA	LD	ESCA	TCGA-V5-A7RB-01A	UCHL3	chr13	76135017	+	KLF5	chr13	73636247	+
intron-5UTR	ENST00000338110	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000395248	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000575627	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000566897	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000569545	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000563060	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000412304	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000564546	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000564595	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000569798	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000395240	ENST00000573319		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	ALDOA	chr16	30077248	+	BCAR4	chr16	11914154	-
5CDS-intron	ENST00000251166	ENST00000572173		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000251166	ENST00000572992		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000251166	ENST00000381820		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000251166	ENST00000312499		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000251166	ENST00000576027		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000539968	ENST00000572173		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-3UTR	ENST00000539968	ENST00000572992		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000539968	ENST00000381820		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000539968	ENST00000312499		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000539968	ENST00000576027		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000537233	ENST00000572173		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000537233	ENST00000572992		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000537233	ENST00000381820		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000537233	ENST00000312499		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000537233	ENST00000576027		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000574025	ENST00000572173		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000574025	ENST00000572992		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000574025	ENST00000381820		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000574025	ENST00000312499		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000574025	ENST00000576027		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000423908	ENST00000572173		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000423908	ENST00000572992		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000423908	ENST00000381820		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000423908	ENST00000312499		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000423908	ENST00000576027		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000577144	ENST00000572173		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-3UTR	ENST00000577144	ENST00000572992		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000577144	ENST00000381820		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000577144	ENST00000312499		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
intron-intron	ENST00000577144	ENST00000576027		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	CORO7	chr16	4466460	-	RMI2	chr16	11409998	+
In-frame	ENST00000251241	ENST00000351388		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000251241	ENST00000458650		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000251241	ENST00000323322		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000251241	ENST00000342364		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000451169	ENST00000351388		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000451169	ENST00000458650		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000451169	ENST00000323322		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000451169	ENST00000342364		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000425628	ENST00000351388		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000425628	ENST00000458650		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000425628	ENST00000323322		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
In-frame	ENST00000425628	ENST00000342364		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	DHX40	chr17	57665414	+	GH1	chr17	61995866	-
5CDS-5UTR	ENST00000167462	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000167462	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000375227	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000392550	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000578363	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000577200	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	LLGL2	chr17	73555491	+	FAM222B	chr17	27093725	-
intron-3CDS	ENST00000456989	ENST00000362042		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000456989	ENST00000585291		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000456989	ENST00000357480		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000456989	ENST00000361665		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000456989	ENST00000579481		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000456989	ENST00000582155		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000456989	ENST00000583378		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000456989	ENST00000536222		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000544503	ENST00000362042		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000544503	ENST00000585291		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000544503	ENST00000357480		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000544503	ENST00000361665		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000544503	ENST00000579481		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000544503	ENST00000582155		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000544503	ENST00000583378		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000544503	ENST00000536222		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000264644	ENST00000362042		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000264644	ENST00000585291		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000264644	ENST00000357480		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000264644	ENST00000361665		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000264644	ENST00000579481		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000264644	ENST00000582155		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000264644	ENST00000583378		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000264644	ENST00000536222		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-3CDS	ENST00000540388	ENST00000362042		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-3CDS	ENST00000540388	ENST00000585291		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-3CDS	ENST00000540388	ENST00000357480		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-intron	ENST00000540388	ENST00000361665		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-intron	ENST00000540388	ENST00000579481		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-intron	ENST00000540388	ENST00000582155		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-intron	ENST00000540388	ENST00000583378		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
3UTR-intron	ENST00000540388	ENST00000536222		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000436615	ENST00000362042		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000436615	ENST00000585291		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-3CDS	ENST00000436615	ENST00000357480		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000436615	ENST00000361665		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000436615	ENST00000579481		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000436615	ENST00000582155		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000436615	ENST00000583378		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
intron-intron	ENST00000436615	ENST00000536222		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	RAPGEFL1	chr17	38333797	+	NFE2L1	chr17	46133747	+
Frame-shit	ENST00000448276	ENST00000245865		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000448276	ENST00000375840		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000448276	ENST00000392950		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000448276	ENST00000336174		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000448276	ENST00000447001		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000448276	ENST00000582137		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-5UTR	ENST00000448276	ENST00000580039		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-intron	ENST00000448276	ENST00000579340		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000323347	ENST00000245865		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000323347	ENST00000375840		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000323347	ENST00000392950		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000323347	ENST00000336174		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000323347	ENST00000447001		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000323347	ENST00000582137		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-5UTR	ENST00000323347	ENST00000580039		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-intron	ENST00000323347	ENST00000579340		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000225742	ENST00000245865		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000225742	ENST00000375840		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000225742	ENST00000392950		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000225742	ENST00000336174		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000225742	ENST00000447001		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
Frame-shit	ENST00000225742	ENST00000582137		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-5UTR	ENST00000225742	ENST00000580039		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-intron	ENST00000225742	ENST00000579340		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	SMARCD2	chr17	61910947	-	STRADA	chr17	61784778	-
5CDS-intron	ENST00000300896	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000300896	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000300896	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000300896	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000300896	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000300896	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000300896	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-5UTR	ENST00000300896	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-5UTR	ENST00000300896	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000592339	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-5UTR	ENST00000592339	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-5UTR	ENST00000592339	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-intron	ENST00000393003	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-5UTR	ENST00000393003	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5CDS-5UTR	ENST00000393003	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000341217		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000581407		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000582266		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000452648		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000582059		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000583953		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-intron	ENST00000586881	ENST00000577682		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-5UTR	ENST00000586881	ENST00000583522		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
intron-5UTR	ENST00000586881	ENST00000581381		TCGA	LD	ESCA	TCGA-V5-A7RE-01A	USP32	chr17	58422842	-	FAM222B	chr17	27117443	-
5UTR-3CDS	ENST00000264010	ENST00000295470		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000264010	ENST00000349655		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000264010	ENST00000602300		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000264010	ENST00000502762		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000264010	ENST00000514511		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-3CDS	ENST00000401394	ENST00000295470		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000401394	ENST00000349655		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000401394	ENST00000602300		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000401394	ENST00000502762		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
5UTR-5UTR	ENST00000401394	ENST00000514511		TCGA	LD	ESCA	TCGA-V5-AASV-01A	CTCF	chr16	67605167	+	HNRNPDL	chr4	83350565	-
In-frame	ENST00000542802	ENST00000389840		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
In-frame	ENST00000542802	ENST00000585328		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5CDS-5UTR	ENST00000542802	ENST00000586052		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
Frame-shit	ENST00000312010	ENST00000389840		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
Frame-shit	ENST00000312010	ENST00000585328		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5CDS-5UTR	ENST00000312010	ENST00000586052		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
In-frame	ENST00000449938	ENST00000389840		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
In-frame	ENST00000449938	ENST00000585328		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5CDS-5UTR	ENST00000449938	ENST00000586052		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5UTR-3CDS	ENST00000588467	ENST00000389840		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5UTR-3CDS	ENST00000588467	ENST00000585328		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5UTR-5UTR	ENST00000588467	ENST00000586052		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
intron-3CDS	ENST00000589424	ENST00000389840		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
intron-3CDS	ENST00000589424	ENST00000585328		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
intron-5UTR	ENST00000589424	ENST00000586052		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
intron-3CDS	ENST00000590546	ENST00000389840		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
intron-3CDS	ENST00000590546	ENST00000585328		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
intron-5UTR	ENST00000590546	ENST00000586052		TCGA	LD	ESCA	TCGA-V5-AASV-01A	USP36	chr17	76808942	-	DNAH17	chr17	76433950	-
5CDS-5UTR	ENST00000318560	ENST00000265381		TCGA	LD	ESCA	TCGA-V5-AASW-01A	ABL1	chr9	133710912	+	APBA1	chr9	72132195	-
5CDS-intron	ENST00000318560	ENST00000470082		TCGA	LD	ESCA	TCGA-V5-AASW-01A	ABL1	chr9	133710912	+	APBA1	chr9	72132195	-
Frame-shit	ENST00000286548	ENST00000375326		TCGA	LD	ESCA	TCGA-V5-AASW-01A	GNAQ	chr9	80646016	-	FBP1	chr9	97382773	-
Frame-shit	ENST00000286548	ENST00000415431		TCGA	LD	ESCA	TCGA-V5-AASW-01A	GNAQ	chr9	80646016	-	FBP1	chr9	97382773	-
intron-3CDS	ENST00000397476	ENST00000375326		TCGA	LD	ESCA	TCGA-V5-AASW-01A	GNAQ	chr9	80646016	-	FBP1	chr9	97382773	-
intron-3CDS	ENST00000397476	ENST00000415431		TCGA	LD	ESCA	TCGA-V5-AASW-01A	GNAQ	chr9	80646016	-	FBP1	chr9	97382773	-
In-frame	ENST00000369705	ENST00000369747		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000369705	ENST00000503942		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000369705	ENST00000369745		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
intron-3CDS	ENST00000541327	ENST00000369747		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
intron-intron	ENST00000541327	ENST00000503942		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
intron-intron	ENST00000541327	ENST00000369745		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
Frame-shit	ENST00000543031	ENST00000369747		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000543031	ENST00000503942		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000543031	ENST00000369745		TCGA	LD	ESCA	TCGA-VR-A8EO-01A	ME1	chr6	84108086	-	UBE3D	chr6	83667169	-
5CDS-intron	ENST00000327158	ENST00000268989		TCGA	LD	ESCA	TCGA-VR-A8EQ-01A	TIMM22	chr17	900473	+	SGSM2	chr17	2279391	+
5CDS-intron	ENST00000327158	ENST00000426855		TCGA	LD	ESCA	TCGA-VR-A8EQ-01A	TIMM22	chr17	900473	+	SGSM2	chr17	2279391	+
5CDS-intron	ENST00000327158	ENST00000574563		TCGA	LD	ESCA	TCGA-VR-A8EQ-01A	TIMM22	chr17	900473	+	SGSM2	chr17	2279391	+
5UTR-3CDS	ENST00000326448	ENST00000436636		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000538048		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000369326		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000341852		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000284483		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000470834		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000460047		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000475336		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000488470		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000326448	ENST00000357327		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-intron	ENST00000326448	ENST00000464785		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-intron	ENST00000326448	ENST00000465393		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000436636		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000538048		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000369326		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000341852		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000284483		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000470834		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000460047		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000475336		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000488470		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-3CDS	ENST00000483465	ENST00000357327		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-intron	ENST00000483465	ENST00000464785		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
intron-intron	ENST00000483465	ENST00000465393		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000436636		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000538048		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000369326		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000341852		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000284483		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000470834		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000460047		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000475336		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000488470		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000496589	ENST00000357327		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-intron	ENST00000496589	ENST00000464785		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-intron	ENST00000496589	ENST00000465393		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000436636		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000538048		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000369326		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000341852		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000284483		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000470834		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000460047		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000475336		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000488470		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-3CDS	ENST00000477495	ENST00000357327		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-intron	ENST00000477495	ENST00000464785		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
5UTR-intron	ENST00000477495	ENST00000465393		TCGA	LD	ESCA	TCGA-VR-A8ER-01A	IFT80	chr3	160116934	-	TNIK	chr3	170946010	-
Frame-shit	ENST00000331710	ENST00000265732		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	TBK1	chr12	64889555	+	RBM48	chr7	92161718	+
Frame-shit	ENST00000331710	ENST00000481551		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	TBK1	chr12	64889555	+	RBM48	chr7	92161718	+
5UTR-3CDS	ENST00000353703	ENST00000372806		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-intron	ENST00000353703	ENST00000396731		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-3UTR	ENST00000353703	ENST00000372801		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-3UTR	ENST00000353703	ENST00000499879		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-intron	ENST00000353703	ENST00000487587		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
3UTR-3CDS	ENST00000479421	ENST00000372806		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
3UTR-intron	ENST00000479421	ENST00000396731		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
3UTR-3UTR	ENST00000479421	ENST00000372801		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
3UTR-3UTR	ENST00000479421	ENST00000499879		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
3UTR-intron	ENST00000479421	ENST00000487587		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-3CDS	ENST00000372839	ENST00000372806		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-intron	ENST00000372839	ENST00000396731		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-3UTR	ENST00000372839	ENST00000372801		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-3UTR	ENST00000372839	ENST00000499879		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
5UTR-intron	ENST00000372839	ENST00000487587		TCGA	LD	ESCA	TCGA-VR-A8ET-01A	YWHAB	chr20	43514527	+	STK4	chr20	43703659	+
Frame-shit	ENST00000346329	ENST00000390344		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	CTTN	chr11	70256066	+	TRGV5	chr7	38389266	-
Frame-shit	ENST00000301843	ENST00000390344		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	CTTN	chr11	70256066	+	TRGV5	chr7	38389266	-
3UTR-3CDS	ENST00000527622	ENST00000390344		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	CTTN	chr11	70256066	+	TRGV5	chr7	38389266	-
Frame-shit	ENST00000376561	ENST00000390344		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	CTTN	chr11	70256066	+	TRGV5	chr7	38389266	-
intron-3CDS	ENST00000538675	ENST00000390344		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	CTTN	chr11	70256066	+	TRGV5	chr7	38389266	-
5CDS-5UTR	ENST00000264501	ENST00000296513		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-5UTR	ENST00000264501	ENST00000388724		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-intron	ENST00000264501	ENST00000388725		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-intron	ENST00000264501	ENST00000492454		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-5UTR	ENST00000455637	ENST00000296513		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-5UTR	ENST00000455637	ENST00000388724		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-intron	ENST00000455637	ENST00000388725		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-intron	ENST00000455637	ENST00000492454		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-5UTR	ENST00000388738	ENST00000296513		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-5UTR	ENST00000388738	ENST00000388724		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-intron	ENST00000388738	ENST00000388725		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
5CDS-intron	ENST00000388738	ENST00000492454		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
3UTR-5UTR	ENST00000495260	ENST00000296513		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
3UTR-5UTR	ENST00000495260	ENST00000388724		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
3UTR-intron	ENST00000495260	ENST00000388725		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
3UTR-intron	ENST00000495260	ENST00000492454		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	KIAA1109	chr4	123118429	+	ADAD1	chr4	123301217	+
Frame-shit	ENST00000262467	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000262467	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000345221	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000345221	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000269280	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000269280	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000572272	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000572272	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000354411	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000354411	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000577119	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
Frame-shit	ENST00000577119	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
5UTR-3CDS	ENST00000571307	ENST00000225698		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
5UTR-3CDS	ENST00000571307	ENST00000574444		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	NLRP1	chr17	5485179	-	C1QBP	chr17	5338286	-
intron-intron	ENST00000268489	ENST00000537792		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-intron	ENST00000268489	ENST00000537465		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-intron	ENST00000268489	ENST00000237353		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-5UTR	ENST00000268489	ENST00000355636		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-5UTR	ENST00000268489	ENST00000543746		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
5UTR-intron	ENST00000397992	ENST00000537792		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
5UTR-intron	ENST00000397992	ENST00000537465		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
5UTR-intron	ENST00000397992	ENST00000237353		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
5UTR-5UTR	ENST00000397992	ENST00000355636		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
5UTR-5UTR	ENST00000397992	ENST00000543746		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-intron	ENST00000558842	ENST00000537792		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-intron	ENST00000558842	ENST00000537465		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-intron	ENST00000558842	ENST00000237353		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-5UTR	ENST00000558842	ENST00000355636		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-5UTR	ENST00000558842	ENST00000543746		TCGA	LD	ESCA	TCGA-VR-A8EU-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72198815	-
intron-3CDS	ENST00000263956	ENST00000374866		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	GTF3C3	chr2	197643759	-	COL5A2	chr2	189917694	-
intron-3CDS	ENST00000409364	ENST00000374866		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	GTF3C3	chr2	197643759	-	COL5A2	chr2	189917694	-
intron-3CDS	ENST00000470386	ENST00000374866		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	GTF3C3	chr2	197643759	-	COL5A2	chr2	189917694	-
Frame-shit	ENST00000375299	ENST00000375312		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000360383		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000356221		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000375310		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000375308		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000252457		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000252458		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5CDS-intron	ENST00000375299	ENST00000461716		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375312		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000360383		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000356221		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375310		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375308		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000252457		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000252458		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5CDS-intron	ENST00000351487	ENST00000461716		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375312		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000360383		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000356221		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375310		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375308		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000252457		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000252458		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-intron	ENST00000475218	ENST00000461716		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
In-frame	ENST00000371822	ENST00000276204		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
In-frame	ENST00000371822	ENST00000276202		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
In-frame	ENST00000254029	ENST00000276204		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
In-frame	ENST00000254029	ENST00000276202		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
In-frame	ENST00000371825	ENST00000276204		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
In-frame	ENST00000371825	ENST00000276202		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
intron-3CDS	ENST00000493448	ENST00000276204		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
intron-3CDS	ENST00000493448	ENST00000276202		TCGA	LD	ESCA	TCGA-VR-A8EW-01A	WDR44	chrX	117544922	+	DOCK11	chrX	117758502	+
5CDS-intron	ENST00000357430	ENST00000488477		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	ACSL3	chr2	223799405	+	KCNE4	chr2	223916852	+
5CDS-5UTR	ENST00000357430	ENST00000281830		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	ACSL3	chr2	223799405	+	KCNE4	chr2	223916852	+
5CDS-intron	ENST00000357430	ENST00000604125		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	ACSL3	chr2	223799405	+	KCNE4	chr2	223916852	+
5CDS-intron	ENST00000392066	ENST00000488477		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	ACSL3	chr2	223799405	+	KCNE4	chr2	223916852	+
5CDS-5UTR	ENST00000392066	ENST00000281830		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	ACSL3	chr2	223799405	+	KCNE4	chr2	223916852	+
5CDS-intron	ENST00000392066	ENST00000604125		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	ACSL3	chr2	223799405	+	KCNE4	chr2	223916852	+
Frame-shit	ENST00000558939	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000558939	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000558939	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000442299	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000442299	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000442299	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000317509	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000317509	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000317509	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000560589	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000560589	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000560589	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000559929	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000559929	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000559929	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000559048	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000559048	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000559048	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000560939	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000560939	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000560939	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000557997	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000557997	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000557997	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000539550	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
In-frame	ENST00000539550	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000539550	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000558201	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000558201	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000558201	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000440567	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000440567	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000440567	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
In-frame	ENST00000559191	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000559191	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000559191	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000558379	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000558379	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000558379	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000557907	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000557907	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000557907	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000451782	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
Frame-shit	ENST00000451782	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000451782	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
intron-3CDS	ENST00000559574	ENST00000248975		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
intron-3CDS	ENST00000559574	ENST00000397492		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
intron-3UTR	ENST00000559574	ENST00000471374		TCGA	LD	ESCA	TCGA-VR-A8Q7-01A	TLE3	chr15	70345566	-	YWHAH	chr22	32352126	+
3UTR-3CDS	ENST00000494318	ENST00000254942		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
3UTR-3CDS	ENST00000494318	ENST00000603068		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
3UTR-5UTR	ENST00000494318	ENST00000569611		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
3UTR-5UTR	ENST00000494318	ENST00000567296		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-3CDS	ENST00000354370	ENST00000254942		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-3CDS	ENST00000354370	ENST00000603068		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-5UTR	ENST00000354370	ENST00000569611		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-5UTR	ENST00000354370	ENST00000567296		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-3CDS	ENST00000396423	ENST00000254942		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-3CDS	ENST00000396423	ENST00000603068		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-5UTR	ENST00000396423	ENST00000569611		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
intron-5UTR	ENST00000396423	ENST00000567296		TCGA	LD	ESCA	TCGA-XP-A8T6-01A	HNF4G	chr8	76320199	+	TERF2	chr16	69406258	-
5CDS-5UTR	ENST00000339775	ENST00000430815		TCGA	LD	ESCA	TCGA-XP-A8T8-01A	BTG3	chr21	18977178	-	C21orf91-OT1	chr21	19159527	-
5CDS-5UTR	ENST00000348354	ENST00000430815		TCGA	LD	ESCA	TCGA-XP-A8T8-01A	BTG3	chr21	18977178	-	C21orf91-OT1	chr21	19159527	-
intron-5UTR	ENST00000464058	ENST00000430815		TCGA	LD	ESCA	TCGA-XP-A8T8-01A	BTG3	chr21	18977178	-	C21orf91-OT1	chr21	19159527	-
5CDS-5UTR	ENST00000319023	ENST00000407721		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
5CDS-5UTR	ENST00000319023	ENST00000355527		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
5CDS-5UTR	ENST00000539574	ENST00000407721		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
5CDS-5UTR	ENST00000539574	ENST00000355527		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
5CDS-5UTR	ENST00000530055	ENST00000407721		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
5CDS-5UTR	ENST00000530055	ENST00000355527		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
intron-5UTR	ENST00000526039	ENST00000407721		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
intron-5UTR	ENST00000526039	ENST00000355527		TCGA	LD	ESCA	TCGA-Z6-A9VB-01A	NADSYN1	chr11	71202949	+	DHCR7	chr11	71156004	-
In-frame	ENST00000448841	ENST00000369902		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
In-frame	ENST00000448841	ENST00000369899		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
In-frame	ENST00000448841	ENST00000423559		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
5CDS-3UTR	ENST00000448841	ENST00000471000		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
In-frame	ENST00000369889	ENST00000369902		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
In-frame	ENST00000369889	ENST00000369899		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
In-frame	ENST00000369889	ENST00000423559		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
5CDS-3UTR	ENST00000369889	ENST00000471000		TCGA	RV	GBM	TCGA-27-2524-01A	WBP1L	chr10	104569811	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000324331	ENST00000301887		TCGA	RV	GBM	TCGA-41-5651-01A	FARS2	chr6	5613553	+	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000324331	ENST00000435842		TCGA	RV	GBM	TCGA-41-5651-01A	FARS2	chr6	5613553	+	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000324331	ENST00000527716		TCGA	RV	GBM	TCGA-41-5651-01A	FARS2	chr6	5613553	+	BATF2	chr11	64757284	-
Frame-shit	ENST00000274680	ENST00000301887		TCGA	RV	GBM	TCGA-41-5651-01A	FARS2	chr6	5613553	+	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000274680	ENST00000435842		TCGA	RV	GBM	TCGA-41-5651-01A	FARS2	chr6	5613553	+	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000274680	ENST00000527716		TCGA	RV	GBM	TCGA-41-5651-01A	FARS2	chr6	5613553	+	BATF2	chr11	64757284	-
In-frame	ENST00000534526	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
In-frame	ENST00000534526	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
5CDS-intron	ENST00000534526	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000531134	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000531134	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000531134	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000427716	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000427716	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000427716	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000266482	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000266482	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000266482	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000546442	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000546442	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000546442	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000525053	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000525053	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000525053	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000381025	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000381025	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000381025	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000472289	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000472289	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000472289	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000473513	ENST00000343742		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-3CDS	ENST00000473513	ENST00000298910		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
intron-intron	ENST00000473513	ENST00000481256		TCGA	RV	GBM	TCGA-06-0129-01A	FGD4	chr12	32552893	+	LRRK2	chr12	40619357	+
In-frame	ENST00000315183	ENST00000321728		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
In-frame	ENST00000315183	ENST00000303531		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
5CDS-intron	ENST00000315183	ENST00000482000		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
5CDS-intron	ENST00000315183	ENST00000498058		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
3UTR-3CDS	ENST00000562829	ENST00000321728		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
3UTR-3CDS	ENST00000562829	ENST00000303531		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
3UTR-intron	ENST00000562829	ENST00000482000		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
3UTR-intron	ENST00000562829	ENST00000498058		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
In-frame	ENST00000395799	ENST00000321728		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
In-frame	ENST00000395799	ENST00000303531		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
5CDS-intron	ENST00000395799	ENST00000482000		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
5CDS-intron	ENST00000395799	ENST00000498058		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
intron-3CDS	ENST00000432286	ENST00000321728		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
intron-3CDS	ENST00000432286	ENST00000303531		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
intron-intron	ENST00000432286	ENST00000482000		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
intron-intron	ENST00000432286	ENST00000498058		TCGA	RV	GBM	TCGA-06-0882-01A	TNRC6A	chr16	24741621	+	PRKCB	chr16	24192111	+
5UTR-intron	ENST00000389153	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5UTR-intron	ENST00000389153	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5CDS-intron	ENST00000608853	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5CDS-intron	ENST00000608853	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5CDS-intron	ENST00000377617	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5CDS-intron	ENST00000377617	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5CDS-intron	ENST00000550104	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5CDS-intron	ENST00000550104	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
intron-intron	ENST00000542287	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
intron-intron	ENST00000542287	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
intron-intron	ENST00000535949	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
intron-intron	ENST00000535949	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5UTR-intron	ENST00000549455	ENST00000202773		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
5UTR-intron	ENST00000549455	ENST00000424576		TCGA	RV	GBM	TCGA-06-0747-01A	ATXN2	chr12	112036588	-	RPL6	chr12	112849246	-
In-frame	ENST00000261318	ENST00000267260		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119583186	+
5CDS-intron	ENST00000261318	ENST00000537597		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119583186	+
intron-3CDS	ENST00000548356	ENST00000267260		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119583186	+
intron-intron	ENST00000548356	ENST00000537597		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119583186	+
In-frame	ENST00000536380	ENST00000267260		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119583186	+
5CDS-intron	ENST00000536380	ENST00000537597		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119583186	+
In-frame	ENST00000273130	ENST00000282538		TCGA	RV	GBM	TCGA-14-0790-01B	DYNC1LI1	chr3	32611838	-	GADL1	chr3	30903257	-
5CDS-intron	ENST00000273130	ENST00000498387		TCGA	RV	GBM	TCGA-14-0790-01B	DYNC1LI1	chr3	32611838	-	GADL1	chr3	30903257	-
5CDS-intron	ENST00000273130	ENST00000454381		TCGA	RV	GBM	TCGA-14-0790-01B	DYNC1LI1	chr3	32611838	-	GADL1	chr3	30903257	-
In-frame	ENST00000432458	ENST00000282538		TCGA	RV	GBM	TCGA-14-0790-01B	DYNC1LI1	chr3	32611838	-	GADL1	chr3	30903257	-
5CDS-intron	ENST00000432458	ENST00000498387		TCGA	RV	GBM	TCGA-14-0790-01B	DYNC1LI1	chr3	32611838	-	GADL1	chr3	30903257	-
5CDS-intron	ENST00000432458	ENST00000454381		TCGA	RV	GBM	TCGA-14-0790-01B	DYNC1LI1	chr3	32611838	-	GADL1	chr3	30903257	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	GBM	TCGA-14-1823-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000373548	ENST00000373710		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
Frame-shit	ENST00000373548	ENST00000536859		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5CDS-intron	ENST00000373548	ENST00000373709		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5CDS-intron	ENST00000373548	ENST00000536384		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5CDS-intron	ENST00000373548	ENST00000491976		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5UTR-3CDS	ENST00000373541	ENST00000373710		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5UTR-3CDS	ENST00000373541	ENST00000536859		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5UTR-intron	ENST00000373541	ENST00000373709		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5UTR-intron	ENST00000373541	ENST00000536384		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5UTR-intron	ENST00000373541	ENST00000491976		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
intron-3CDS	ENST00000490081	ENST00000373710		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
intron-3CDS	ENST00000490081	ENST00000536859		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
intron-intron	ENST00000490081	ENST00000373709		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
intron-intron	ENST00000490081	ENST00000536384		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
intron-intron	ENST00000490081	ENST00000491976		TCGA	RV	GBM	TCGA-27-2519-01A	HDAC1	chr1	32768334	+	SERINC2	chr1	31883232	+
5CDS-intron	ENST00000433360	ENST00000421837		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433360	ENST00000354829		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433360	ENST00000342499		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433360	ENST00000417625		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433360	ENST00000415413		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433360	ENST00000477658		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433360	ENST00000444905		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433360	ENST00000312017		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433360	ENST00000222382		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000340694	ENST00000421837		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000340694	ENST00000354829		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000340694	ENST00000342499		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000340694	ENST00000417625		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000340694	ENST00000415413		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000340694	ENST00000477658		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000340694	ENST00000444905		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000340694	ENST00000312017		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000340694	ENST00000222382		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000424654	ENST00000421837		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000424654	ENST00000354829		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000424654	ENST00000342499		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000424654	ENST00000417625		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000424654	ENST00000415413		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000424654	ENST00000477658		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000424654	ENST00000444905		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000424654	ENST00000312017		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000424654	ENST00000222382		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433881	ENST00000421837		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433881	ENST00000354829		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433881	ENST00000342499		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433881	ENST00000417625		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000433881	ENST00000415413		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433881	ENST00000477658		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433881	ENST00000444905		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433881	ENST00000312017		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000433881	ENST00000222382		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000289495	ENST00000421837		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000289495	ENST00000354829		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000289495	ENST00000342499		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000289495	ENST00000417625		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000289495	ENST00000415413		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000289495	ENST00000477658		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000289495	ENST00000444905		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000289495	ENST00000312017		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000289495	ENST00000222382		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000456331	ENST00000421837		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000456331	ENST00000354829		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000456331	ENST00000342499		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000456331	ENST00000417625		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-intron	ENST00000456331	ENST00000415413		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000456331	ENST00000477658		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000456331	ENST00000444905		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000456331	ENST00000312017		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
5CDS-3UTR	ENST00000456331	ENST00000222382		TCGA	RV	GBM	TCGA-14-1402-02A	PPP1R9A	chr7	94540820	+	CYP3A43	chr7	99454456	+
In-frame	ENST00000373547	ENST00000294244		TCGA	RV	GBM	TCGA-28-1753-01A	PPP6C	chr9	127933364	-	C11orf84	chr11	63594400	+
In-frame	ENST00000415905	ENST00000294244		TCGA	RV	GBM	TCGA-28-1753-01A	PPP6C	chr9	127933364	-	C11orf84	chr11	63594400	+
In-frame	ENST00000451402	ENST00000294244		TCGA	RV	GBM	TCGA-28-1753-01A	PPP6C	chr9	127933364	-	C11orf84	chr11	63594400	+
5UTR-3CDS	ENST00000373546	ENST00000294244		TCGA	RV	GBM	TCGA-28-1753-01A	PPP6C	chr9	127933364	-	C11orf84	chr11	63594400	+
5CDS-5UTR	ENST00000393386	ENST00000397752		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393386	ENST00000318493		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000436117		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000495962		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000539704		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000397752		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000318493		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000436117		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000495962		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000539704		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000397752		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000318493		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000436117		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000495962		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000539704		TCGA	RV	GBM	TCGA-06-5417-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000255674	ENST00000400384		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-intron	ENST00000255674	ENST00000540640		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000255674	ENST00000592595		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000255674	ENST00000588540		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-intron	ENST00000255674	ENST00000587823		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000454359	ENST00000400384		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-intron	ENST00000454359	ENST00000540640		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000454359	ENST00000592595		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000454359	ENST00000588540		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-intron	ENST00000454359	ENST00000587823		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000437017	ENST00000400384		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-intron	ENST00000437017	ENST00000540640		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000437017	ENST00000592595		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000437017	ENST00000588540		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-intron	ENST00000437017	ENST00000587823		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
intron-5UTR	ENST00000579986	ENST00000400384		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
intron-intron	ENST00000579986	ENST00000540640		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
intron-5UTR	ENST00000579986	ENST00000592595		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
intron-5UTR	ENST00000579986	ENST00000588540		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
intron-intron	ENST00000579986	ENST00000587823		TCGA	RV	GBM	TCGA-06-5413-01A	RTTN	chr18	67866650	-	MAPK4	chr18	48189459	+
5CDS-5UTR	ENST00000263593	ENST00000356438		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
5CDS-5UTR	ENST00000263593	ENST00000425380		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
5CDS-5UTR	ENST00000263593	ENST00000526028		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
5CDS-5UTR	ENST00000545756	ENST00000356438		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
5CDS-5UTR	ENST00000545756	ENST00000425380		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
5CDS-5UTR	ENST00000545756	ENST00000526028		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
intron-5UTR	ENST00000525730	ENST00000356438		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
intron-5UTR	ENST00000525730	ENST00000425380		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
intron-5UTR	ENST00000525730	ENST00000526028		TCGA	RV	GBM	TCGA-06-0125-02A	SIAE	chr11	124539256	-	HYLS1	chr11	125769239	+
3UTR-intron	ENST00000317357	ENST00000369066		TCGA	RV	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106899569	+
3UTR-intron	ENST00000317357	ENST00000535438		TCGA	RV	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106899569	+
3UTR-intron	ENST00000317357	ENST00000487681		TCGA	RV	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106899569	+
3UTR-intron	ENST00000494935	ENST00000369066		TCGA	RV	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106899569	+
3UTR-intron	ENST00000494935	ENST00000535438		TCGA	RV	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106899569	+
3UTR-intron	ENST00000494935	ENST00000487681		TCGA	RV	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106899569	+
5CDS-3UTR	ENST00000253251	ENST00000479574		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000253251	ENST00000373842		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000253251	ENST00000398997		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-3UTR	ENST00000377157	ENST00000479574		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000377157	ENST00000373842		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000377157	ENST00000398997		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-3UTR	ENST00000343090	ENST00000479574		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000343090	ENST00000373842		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000343090	ENST00000398997		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
intron-3UTR	ENST00000377153	ENST00000479574		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
intron-5UTR	ENST00000377153	ENST00000373842		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
intron-5UTR	ENST00000377153	ENST00000398997		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
3UTR-3UTR	ENST00000475795	ENST00000479574		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
3UTR-5UTR	ENST00000475795	ENST00000373842		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
3UTR-5UTR	ENST00000475795	ENST00000398997		TCGA	RV	GBM	TCGA-12-3652-01A	UBE4B	chr1	10190871	+	MED18	chr1	28657108	+
In-frame	ENST00000253861	ENST00000594800		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
5CDS-3UTR	ENST00000253861	ENST00000602069		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
5CDS-3UTR	ENST00000253861	ENST00000357052		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
In-frame	ENST00000539845	ENST00000594800		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
5CDS-3UTR	ENST00000539845	ENST00000602069		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
5CDS-3UTR	ENST00000539845	ENST00000357052		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
In-frame	ENST00000393161	ENST00000594800		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
5CDS-3UTR	ENST00000393161	ENST00000602069		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
5CDS-3UTR	ENST00000393161	ENST00000357052		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3CDS	ENST00000545148	ENST00000594800		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3UTR	ENST00000545148	ENST00000602069		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3UTR	ENST00000545148	ENST00000357052		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3CDS	ENST00000460346	ENST00000594800		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3UTR	ENST00000460346	ENST00000602069		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3UTR	ENST00000460346	ENST00000357052		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3CDS	ENST00000541309	ENST00000594800		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3UTR	ENST00000541309	ENST00000602069		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
intron-3UTR	ENST00000541309	ENST00000357052		TCGA	RV	GBM	TCGA-19-0957-02A	EXOC4	chr7	133002144	+	RAB4B	chr19	41285924	+
Frame-shit	ENST00000242505	ENST00000539909		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
Frame-shit	ENST00000242505	ENST00000286621		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
Frame-shit	ENST00000242505	ENST00000372734		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
Frame-shit	ENST00000242505	ENST00000541550		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
5CDS-intron	ENST00000242505	ENST00000467840		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
intron-3CDS	ENST00000607940	ENST00000539909		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
intron-3CDS	ENST00000607940	ENST00000286621		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
intron-3CDS	ENST00000607940	ENST00000372734		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
intron-3CDS	ENST00000607940	ENST00000541550		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
intron-intron	ENST00000607940	ENST00000467840		TCGA	RV	GBM	TCGA-28-5204-01A	FAM149B1	chr10	74970196	+	ADK	chr10	76349040	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	GBM	TCGA-06-2567-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000354386	ENST00000261681		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000354386	ENST00000555925		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000354386	ENST00000554911		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000354386	ENST00000556345		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000556134	ENST00000261681		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000556134	ENST00000555925		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000556134	ENST00000554911		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000556134	ENST00000556345		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000423743	ENST00000261681		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000423743	ENST00000555925		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000423743	ENST00000554911		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000423743	ENST00000556345		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000261244	ENST00000261681		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
Frame-shit	ENST00000261244	ENST00000555925		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000261244	ENST00000554911		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5CDS-intron	ENST00000261244	ENST00000556345		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
3UTR-3CDS	ENST00000538571	ENST00000261681		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
3UTR-3CDS	ENST00000538571	ENST00000555925		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
3UTR-intron	ENST00000538571	ENST00000554911		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
3UTR-intron	ENST00000538571	ENST00000556345		TCGA	RV	GBM	TCGA-02-0033-01A	KIAA0586	chr14	58910893	+	MPP5	chr14	67799497	+
5UTR-3CDS	ENST00000495013	ENST00000378688		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
5UTR-3CDS	ENST00000495013	ENST00000542664		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
5UTR-3CDS	ENST00000495013	ENST00000543956		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000258648	ENST00000378688		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000258648	ENST00000542664		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000258648	ENST00000543956		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000378586	ENST00000378688		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000378586	ENST00000542664		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000378586	ENST00000543956		TCGA	RV	GBM	TCGA-12-0619-01A	MED4	chr13	48653980	-	HTR2A	chr13	47409774	-
In-frame	ENST00000554503	ENST00000537081		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
In-frame	ENST00000554503	ENST00000257861		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
5CDS-5UTR	ENST00000554503	ENST00000550083		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
Frame-shit	ENST00000393825	ENST00000537081		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
Frame-shit	ENST00000393825	ENST00000257861		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
5CDS-5UTR	ENST00000393825	ENST00000550083		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
In-frame	ENST00000556732	ENST00000537081		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
In-frame	ENST00000556732	ENST00000257861		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
5CDS-5UTR	ENST00000556732	ENST00000550083		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
intron-3CDS	ENST00000557276	ENST00000537081		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
intron-3CDS	ENST00000557276	ENST00000257861		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
intron-5UTR	ENST00000557276	ENST00000550083		TCGA	RV	GBM	TCGA-06-0129-01A	NDUFA4L2	chr12	57630376	-	AVIL	chr12	58197174	-
Frame-shit	ENST00000377532	ENST00000541529		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
Frame-shit	ENST00000377532	ENST00000270776		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
Frame-shit	ENST00000377532	ENST00000538557		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
5CDS-intron	ENST00000377532	ENST00000498356		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
Frame-shit	ENST00000361923	ENST00000541529		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
Frame-shit	ENST00000361923	ENST00000270776		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
Frame-shit	ENST00000361923	ENST00000538557		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
5CDS-intron	ENST00000361923	ENST00000498356		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
intron-3CDS	ENST00000377541	ENST00000541529		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
intron-3CDS	ENST00000377541	ENST00000270776		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
intron-3CDS	ENST00000377541	ENST00000538557		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
intron-intron	ENST00000377541	ENST00000498356		TCGA	RV	GBM	TCGA-06-0879-01A	PER3	chr1	7890221	+	PGD	chr1	10471475	+
Frame-shit	ENST00000340652	ENST00000267328		TCGA	RV	GBM	TCGA-06-2558-01A	VWC2	chr7	49815727	+	RAB20	chr13	111176544	-
In-frame	ENST00000566780	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000566780	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000566780	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000566780	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000566780	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000566780	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000566780	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000566780	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000566780	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000406884	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000406884	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000406884	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000406884	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000406884	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000406884	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000406884	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000406884	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000406884	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000539474	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000539474	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000539474	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000539474	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000539474	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000539474	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000539474	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000539474	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000539474	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000402655	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000402655	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000402655	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000402655	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000402655	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000402655	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000402655	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000402655	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000402655	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000408984	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000408984	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000408984	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000408984	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000408984	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000408984	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000408984	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000408984	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000408984	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000355860	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000355860	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000355860	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000355860	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
In-frame	ENST00000355860	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000355860	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000355860	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000355860	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000355860	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3CDS	ENST00000565791	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3CDS	ENST00000565791	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3CDS	ENST00000565791	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3CDS	ENST00000565791	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3CDS	ENST00000565791	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3CDS	ENST00000565791	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3UTR	ENST00000565791	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3UTR	ENST00000565791	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
3UTR-3UTR	ENST00000565791	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000569818	ENST00000566621		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000569818	ENST00000437989		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000569818	ENST00000569302		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000569818	ENST00000567389		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000569818	ENST00000562877		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000569818	ENST00000338183		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000569818	ENST00000565792		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000569818	ENST00000562489		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000569818	ENST00000563167		TCGA	RV	GBM	TCGA-06-5415-01A	WWOX	chr16	78198186	+	C15orf41	chr15	37100525	+
Frame-shit	ENST00000414563	ENST00000159060		TCGA	RV	GBM	TCGA-14-1402-02A	ZDHHC14	chr6	158014178	+	NOX3	chr6	155732494	-
Frame-shit	ENST00000359775	ENST00000159060		TCGA	RV	GBM	TCGA-14-1402-02A	ZDHHC14	chr6	158014178	+	NOX3	chr6	155732494	-
3UTR-3CDS	ENST00000341375	ENST00000159060		TCGA	RV	GBM	TCGA-14-1402-02A	ZDHHC14	chr6	158014178	+	NOX3	chr6	155732494	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	GBM	TCGA-14-1829-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000398810	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000398810	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000439599	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000439599	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000398812	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000398812	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000335866	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000335866	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000402578	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000402578	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000403097	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000403097	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
In-frame	ENST00000406641	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
In-frame	ENST00000406641	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000357271	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000357271	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000407526	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000407526	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000401949	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
Frame-shit	ENST00000401949	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
In-frame	ENST00000402497	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
In-frame	ENST00000402497	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
intron-3CDS	ENST00000483819	ENST00000242108		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
intron-3CDS	ENST00000483819	ENST00000534978		TCGA	RV	GBM	TCGA-14-0736-02A	GRB10	chr7	50737419	-	EEPD1	chr7	36278594	+
5CDS-5UTR	ENST00000322231	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000322231	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-3UTR	ENST00000322231	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000339077	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000339077	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-3UTR	ENST00000339077	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000539124	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000539124	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-3UTR	ENST00000539124	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000542558	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000542558	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-3UTR	ENST00000542558	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000409689	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000409689	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-3UTR	ENST00000409689	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000545443	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-5UTR	ENST00000545443	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
5CDS-3UTR	ENST00000545443	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000479288	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000479288	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-3UTR	ENST00000479288	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000322275	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000322275	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-3UTR	ENST00000322275	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000410047	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000410047	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-3UTR	ENST00000410047	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000545771	ENST00000396668		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-5UTR	ENST00000545771	ENST00000396667		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
intron-3UTR	ENST00000545771	ENST00000453686		TCGA	RV	GBM	TCGA-14-0736-02A	KLHL7	chr7	23191828	+	TMEM106B	chr7	12254435	+
In-frame	ENST00000392328	ENST00000409998		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
In-frame	ENST00000392328	ENST00000392370		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
In-frame	ENST00000392328	ENST00000410068		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
5CDS-intron	ENST00000392328	ENST00000479784		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
In-frame	ENST00000281416	ENST00000409998		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
In-frame	ENST00000281416	ENST00000392370		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
In-frame	ENST00000281416	ENST00000410068		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
5CDS-intron	ENST00000281416	ENST00000479784		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-3CDS	ENST00000535751	ENST00000409998		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-3CDS	ENST00000535751	ENST00000392370		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-3CDS	ENST00000535751	ENST00000410068		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-intron	ENST00000535751	ENST00000479784		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-3CDS	ENST00000489793	ENST00000409998		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-3CDS	ENST00000489793	ENST00000392370		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-3CDS	ENST00000489793	ENST00000410068		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
intron-intron	ENST00000489793	ENST00000479784		TCGA	RV	GBM	TCGA-06-2561-01A	MFSD6	chr2	191302287	+	CALCRL	chr2	188228229	-
5UTR-3CDS	ENST00000366882	ENST00000487338		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
5UTR-5UTR	ENST00000366882	ENST00000498046		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
5UTR-intron	ENST00000366882	ENST00000339986		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
intron-3CDS	ENST00000354448	ENST00000487338		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
intron-5UTR	ENST00000354448	ENST00000498046		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
intron-intron	ENST00000354448	ENST00000339986		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
Frame-shit	ENST00000539869	ENST00000487338		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
5CDS-5UTR	ENST00000539869	ENST00000498046		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
5CDS-intron	ENST00000539869	ENST00000339986		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
intron-3CDS	ENST00000535229	ENST00000487338		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
intron-5UTR	ENST00000535229	ENST00000498046		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
intron-intron	ENST00000535229	ENST00000339986		TCGA	RV	GBM	TCGA-14-1402-02A	PDE10A	chr6	166075435	-	ZNF695	chr1	247109129	-
Frame-shit	ENST00000222584	ENST00000258733		TCGA	RV	GBM	TCGA-28-1747-01C	SP4	chr7	21468410	+	GPNMB	chr7	23313140	+
Frame-shit	ENST00000222584	ENST00000381990		TCGA	RV	GBM	TCGA-28-1747-01C	SP4	chr7	21468410	+	GPNMB	chr7	23313140	+
5CDS-intron	ENST00000222584	ENST00000409458		TCGA	RV	GBM	TCGA-28-1747-01C	SP4	chr7	21468410	+	GPNMB	chr7	23313140	+
5CDS-intron	ENST00000222584	ENST00000539136		TCGA	RV	GBM	TCGA-28-1747-01C	SP4	chr7	21468410	+	GPNMB	chr7	23313140	+
5CDS-intron	ENST00000222584	ENST00000453162		TCGA	RV	GBM	TCGA-28-1747-01C	SP4	chr7	21468410	+	GPNMB	chr7	23313140	+
5CDS-3UTR	ENST00000222584	ENST00000478451		TCGA	RV	GBM	TCGA-28-1747-01C	SP4	chr7	21468410	+	GPNMB	chr7	23313140	+
intron-3CDS	ENST00000374515	ENST00000296499		TCGA	RV	GBM	TCGA-14-0871-01A	TXN	chr9	113013100	-	NDST3	chr4	119059209	+
intron-3CDS	ENST00000374515	ENST00000433996		TCGA	RV	GBM	TCGA-14-0871-01A	TXN	chr9	113013100	-	NDST3	chr4	119059209	+
In-frame	ENST00000374517	ENST00000296499		TCGA	RV	GBM	TCGA-14-0871-01A	TXN	chr9	113013100	-	NDST3	chr4	119059209	+
In-frame	ENST00000374517	ENST00000433996		TCGA	RV	GBM	TCGA-14-0871-01A	TXN	chr9	113013100	-	NDST3	chr4	119059209	+
intron-3CDS	ENST00000487892	ENST00000296499		TCGA	RV	GBM	TCGA-14-0871-01A	TXN	chr9	113013100	-	NDST3	chr4	119059209	+
intron-3CDS	ENST00000487892	ENST00000433996		TCGA	RV	GBM	TCGA-14-0871-01A	TXN	chr9	113013100	-	NDST3	chr4	119059209	+
Frame-shit	ENST00000396432	ENST00000331161		TCGA	RV	GBM	TCGA-06-5415-01A	ARHGAP21	chr10	24955914	-	ENKUR	chr10	25284798	-
Frame-shit	ENST00000396432	ENST00000376363		TCGA	RV	GBM	TCGA-06-5415-01A	ARHGAP21	chr10	24955914	-	ENKUR	chr10	25284798	-
intron-3CDS	ENST00000320481	ENST00000331161		TCGA	RV	GBM	TCGA-06-5415-01A	ARHGAP21	chr10	24955914	-	ENKUR	chr10	25284798	-
intron-3CDS	ENST00000320481	ENST00000376363		TCGA	RV	GBM	TCGA-06-5415-01A	ARHGAP21	chr10	24955914	-	ENKUR	chr10	25284798	-
intron-3CDS	ENST00000493154	ENST00000331161		TCGA	RV	GBM	TCGA-06-5415-01A	ARHGAP21	chr10	24955914	-	ENKUR	chr10	25284798	-
intron-3CDS	ENST00000493154	ENST00000376363		TCGA	RV	GBM	TCGA-06-5415-01A	ARHGAP21	chr10	24955914	-	ENKUR	chr10	25284798	-
Frame-shit	ENST00000343245	ENST00000369037		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000343245	ENST00000453874		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000343245	ENST00000369031		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000369070	ENST00000369037		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
In-frame	ENST00000369070	ENST00000453874		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000369070	ENST00000369031		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000369076	ENST00000369037		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
In-frame	ENST00000369076	ENST00000453874		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
5CDS-intron	ENST00000369076	ENST00000369031		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
3UTR-3CDS	ENST00000360666	ENST00000369037		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
3UTR-3CDS	ENST00000360666	ENST00000453874		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
3UTR-intron	ENST00000360666	ENST00000369031		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
5UTR-3CDS	ENST00000475645	ENST00000369037		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
5UTR-3CDS	ENST00000475645	ENST00000453874		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
5UTR-intron	ENST00000475645	ENST00000369031		TCGA	RV	GBM	TCGA-06-1804-01A	ATG5	chr6	106649847	-	PDSS2	chr6	107475981	-
Frame-shit	ENST00000566621	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000566621	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
5CDS-intron	ENST00000566621	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000437989	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
5CDS-intron	ENST00000437989	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000569302	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
5CDS-intron	ENST00000569302	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000567389	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-intron	ENST00000567389	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562877	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-intron	ENST00000562877	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000338183	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-intron	ENST00000338183	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000565792	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-intron	ENST00000565792	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000562489	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-intron	ENST00000562489	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000338564		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000561208		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000397624		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000382766		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000444725		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000340545		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000559085		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000219869		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000557796		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000397620		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000424352		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-3CDS	ENST00000563167	ENST00000559561		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
intron-intron	ENST00000563167	ENST00000559408		TCGA	RV	GBM	TCGA-06-0174-01A	C15orf41	chr15	36872162	+	MEIS2	chr15	37242601	-
Frame-shit	ENST00000373867	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
5CDS-intron	ENST00000373867	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
In-frame	ENST00000373868	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
5CDS-intron	ENST00000373868	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
In-frame	ENST00000442566	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
5CDS-intron	ENST00000442566	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
In-frame	ENST00000277705	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
5CDS-intron	ENST00000277705	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
In-frame	ENST00000419214	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
5CDS-intron	ENST00000419214	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
Frame-shit	ENST00000468840	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
5CDS-intron	ENST00000468840	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
intron-3CDS	ENST00000435852	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
intron-intron	ENST00000435852	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
intron-3CDS	ENST00000422313	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
intron-intron	ENST00000422313	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
intron-3CDS	ENST00000510215	ENST00000242505		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
intron-intron	ENST00000510215	ENST00000607940		TCGA	RV	GBM	TCGA-28-5204-01A	FAM13C	chr10	61011335	-	FAM149B1	chr10	74934445	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	GBM	TCGA-14-0789-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
3UTR-3CDS	ENST00000398922	ENST00000528416		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
3UTR-3CDS	ENST00000398922	ENST00000415073		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
3UTR-3CDS	ENST00000398922	ENST00000252268		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
3UTR-intron	ENST00000398922	ENST00000532264		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
In-frame	ENST00000532971	ENST00000528416		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000532971	ENST00000415073		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000532971	ENST00000252268		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000532971	ENST00000532264		TCGA	RV	GBM	TCGA-06-5415-01A	METTL12	chr11	62433418	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000491145	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
In-frame	ENST00000395720	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
In-frame	ENST00000357698	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
In-frame	ENST00000380230	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
intron-3CDS	ENST00000496660	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
intron-3CDS	ENST00000319580	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
In-frame	ENST00000395723	ENST00000323544		TCGA	RV	GBM	TCGA-06-0152-02A	ANKDD1A	chr15	65234762	+	PLEKHO2	chr15	65152093	+
5CDS-5UTR	ENST00000356015	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000356015	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000432560	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000432560	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000357586	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000357586	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000405198	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000405198	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000317368	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000317368	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000402502	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000402502	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000415447	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000415447	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000472057	ENST00000248929		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000472057	ENST00000454798		TCGA	RV	GBM	TCGA-41-2572-01A	AP1B1	chr22	29734979	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000366542	ENST00000308105		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-5UTR	ENST00000366542	ENST00000366537		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-intron	ENST00000366542	ENST00000470211		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-5UTR	ENST00000366543	ENST00000308105		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-5UTR	ENST00000366543	ENST00000366537		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-intron	ENST00000366543	ENST00000470211		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-5UTR	ENST00000366544	ENST00000308105		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-5UTR	ENST00000366544	ENST00000366537		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-intron	ENST00000366544	ENST00000470211		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-5UTR	ENST00000468254	ENST00000308105		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-5UTR	ENST00000468254	ENST00000366537		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-intron	ENST00000468254	ENST00000470211		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-5UTR	ENST00000481987	ENST00000308105		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-5UTR	ENST00000481987	ENST00000366537		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-intron	ENST00000481987	ENST00000470211		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-5UTR	ENST00000490813	ENST00000308105		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-5UTR	ENST00000490813	ENST00000366537		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
intron-intron	ENST00000490813	ENST00000470211		TCGA	RV	GBM	TCGA-06-2561-01A	CEP170	chr1	243349561	-	C1orf100	chr1	244527990	+
5CDS-5UTR	ENST00000370489	ENST00000371581		TCGA	RV	GBM	TCGA-06-2563-01A	ENTPD7	chr10	101439632	+	IDE	chr10	94250352	-
5CDS-5UTR	ENST00000370489	ENST00000265986		TCGA	RV	GBM	TCGA-06-2563-01A	ENTPD7	chr10	101439632	+	IDE	chr10	94250352	-
5CDS-5UTR	ENST00000370489	ENST00000496903		TCGA	RV	GBM	TCGA-06-2563-01A	ENTPD7	chr10	101439632	+	IDE	chr10	94250352	-
5UTR-3CDS	ENST00000368655	ENST00000239468		TCGA	RV	GBM	TCGA-19-2619-01A	GATAD2B	chr1	153895209	-	TNFSF18	chr1	173013109	-
5UTR-3CDS	ENST00000368655	ENST00000404377		TCGA	RV	GBM	TCGA-19-2619-01A	GATAD2B	chr1	153895209	-	TNFSF18	chr1	173013109	-
intron-3CDS	ENST00000379933	ENST00000429723		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
intron-3CDS	ENST00000379933	ENST00000379715		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
intron-3CDS	ENST00000379933	ENST00000507463		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000379938	ENST00000429723		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000379938	ENST00000379715		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000379938	ENST00000507463		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000334984	ENST00000429723		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000334984	ENST00000379715		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000334984	ENST00000507463		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000349384	ENST00000429723		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000349384	ENST00000379715		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5UTR-3CDS	ENST00000349384	ENST00000507463		TCGA	RV	GBM	TCGA-06-5412-01A	RREB1	chr6	7108293	+	EEF1E1	chr6	8097700	-
5CDS-5UTR	ENST00000377707	ENST00000379992		TCGA	RV	GBM	TCGA-06-0211-02A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000377707	ENST00000493941		TCGA	RV	GBM	TCGA-06-0211-02A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000377707	ENST00000308675		TCGA	RV	GBM	TCGA-06-0211-02A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000377700	ENST00000379992		TCGA	RV	GBM	TCGA-06-0211-02A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000377700	ENST00000493941		TCGA	RV	GBM	TCGA-06-0211-02A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000377700	ENST00000308675		TCGA	RV	GBM	TCGA-06-0211-02A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
Frame-shit	ENST00000252699	ENST00000371626		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
5CDS-intron	ENST00000252699	ENST00000471493		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
5CDS-intron	ENST00000252699	ENST00000610127		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
Frame-shit	ENST00000424234	ENST00000371626		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
5CDS-intron	ENST00000424234	ENST00000471493		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
5CDS-intron	ENST00000424234	ENST00000610127		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
Frame-shit	ENST00000390009	ENST00000371626		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
5CDS-intron	ENST00000390009	ENST00000471493		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
5CDS-intron	ENST00000390009	ENST00000610127		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
intron-3CDS	ENST00000497637	ENST00000371626		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
intron-intron	ENST00000497637	ENST00000471493		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
intron-intron	ENST00000497637	ENST00000610127		TCGA	RV	GBM	TCGA-14-1034-02B	ACTN4	chr19	39138547	+	TXNDC12	chr1	52507269	-
intron-3CDS	ENST00000421834	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000421834	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000421834	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000421834	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000421834	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000421834	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000421834	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370769	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370769	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370769	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370769	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370769	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370769	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370769	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000312431	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000312431	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000312431	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000312431	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000312431	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000312431	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000312431	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
Frame-shit	ENST00000370754	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
Frame-shit	ENST00000370754	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
Frame-shit	ENST00000370754	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
5CDS-intron	ENST00000370754	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
5CDS-intron	ENST00000370754	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
5CDS-intron	ENST00000370754	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
5CDS-intron	ENST00000370754	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370788	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370788	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370788	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370788	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370788	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370788	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370788	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000361203	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000361203	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000361203	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000361203	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000361203	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000361203	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000361203	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000244364	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000244364	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000244364	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000244364	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000244364	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000244364	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000244364	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000446842	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000446842	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000446842	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000446842	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000446842	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000446842	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000446842	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000340834	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000340834	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000340834	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000340834	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000340834	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000340834	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000340834	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370765	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370765	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000370765	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370765	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370765	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370765	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000370765	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000518935	ENST00000503581		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000518935	ENST00000370621		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-3CDS	ENST00000518935	ENST00000370616		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000518935	ENST00000393380		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000518935	ENST00000342421		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000518935	ENST00000370618		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
intron-intron	ENST00000518935	ENST00000486069		TCGA	RV	GBM	TCGA-06-0216-01B	DST	chr6	56716195	-	EYS	chr6	64574251	-
Frame-shit	ENST00000230036	ENST00000378198		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
Frame-shit	ENST00000230036	ENST00000545995		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
In-frame	ENST00000230036	ENST00000341060		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
5CDS-intron	ENST00000230036	ENST00000478285		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
intron-3CDS	ENST00000474784	ENST00000378198		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
intron-3CDS	ENST00000474784	ENST00000545995		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
intron-3CDS	ENST00000474784	ENST00000341060		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
intron-intron	ENST00000474784	ENST00000478285		TCGA	RV	GBM	TCGA-76-4929-01A	GPLD1	chr6	24433415	-	TDP2	chr6	24651297	-
intron-3CDS	ENST00000228955	ENST00000373025		TCGA	RV	GBM	TCGA-06-0129-01A	GTF2H3	chr12	124123890	+	PGC	chr6	41705566	-
intron-intron	ENST00000228955	ENST00000425343		TCGA	RV	GBM	TCGA-06-0129-01A	GTF2H3	chr12	124123890	+	PGC	chr6	41705566	-
In-frame	ENST00000543341	ENST00000373025		TCGA	RV	GBM	TCGA-06-0129-01A	GTF2H3	chr12	124123890	+	PGC	chr6	41705566	-
5CDS-intron	ENST00000543341	ENST00000425343		TCGA	RV	GBM	TCGA-06-0129-01A	GTF2H3	chr12	124123890	+	PGC	chr6	41705566	-
In-frame	ENST00000403681	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000403681	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000403681	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000403681	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000541363	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000541363	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000541363	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000541363	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000393577	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000393577	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000393577	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000393577	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000393578	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000393578	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000393578	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000393578	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000425208	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000425208	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000425208	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000425208	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000536545	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000536545	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000536545	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000536545	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000354636	ENST00000229179		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000354636	ENST00000378905		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000354636	ENST00000539906		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
5CDS-intron	ENST00000354636	ENST00000401003		TCGA	RV	GBM	TCGA-06-0187-01A	HMGA2	chr12	66232349	+	NUP107	chr12	69109407	+
In-frame	ENST00000398645	ENST00000393946		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
In-frame	ENST00000398645	ENST00000525457		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
In-frame	ENST00000398645	ENST00000527043		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
5CDS-intron	ENST00000398645	ENST00000526281		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
In-frame	ENST00000529006	ENST00000393946		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
In-frame	ENST00000529006	ENST00000525457		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
In-frame	ENST00000529006	ENST00000527043		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
5CDS-intron	ENST00000529006	ENST00000526281		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
3UTR-3CDS	ENST00000526258	ENST00000393946		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
3UTR-3CDS	ENST00000526258	ENST00000525457		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
3UTR-3CDS	ENST00000526258	ENST00000527043		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
3UTR-intron	ENST00000526258	ENST00000526281		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-3CDS	ENST00000308783	ENST00000393946		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-3CDS	ENST00000308783	ENST00000525457		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-3CDS	ENST00000308783	ENST00000527043		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-intron	ENST00000308783	ENST00000526281		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-3CDS	ENST00000530342	ENST00000393946		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-3CDS	ENST00000530342	ENST00000525457		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-3CDS	ENST00000530342	ENST00000527043		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
intron-intron	ENST00000530342	ENST00000526281		TCGA	RV	GBM	TCGA-02-2486-01A	KDM2A	chr11	66999431	+	SYT12	chr11	66812064	+
Frame-shit	ENST00000296306	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000296306	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000296306	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000310340	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000310340	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000310340	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000453061	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000453061	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000453061	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000504346	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000504346	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000504346	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000383028	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000383028	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000383028	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000536264	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000536264	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000536264	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
intron-3CDS	ENST00000502311	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
intron-3CDS	ENST00000502311	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
intron-3CDS	ENST00000502311	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000503111	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000503111	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000503111	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000509768	ENST00000248701		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000509768	ENST00000506738		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
Frame-shit	ENST00000509768	ENST00000504762		TCGA	RV	GBM	TCGA-27-1830-01A	PIGG	chr4	502759	+	SPINK2	chr4	57676350	-
In-frame	ENST00000302516	ENST00000563392		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000570055		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000563206		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000451014		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000568625		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000288071		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000393657		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000302516	ENST00000355992		TCGA	RV	GBM	TCGA-26-5133-01A	SF3B3	chr16	70595687	+	DDX19B	chr16	70358488	+
3UTR-3CDS	ENST00000578312	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
3UTR-3CDS	ENST00000578312	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000262394	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000262394	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000579733	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000579733	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000583193	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000583193	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000581185	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000581185	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000427287	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000427287	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000348811	ENST00000394287		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
Frame-shit	ENST00000348811	ENST00000300651		TCGA	RV	GBM	TCGA-27-2524-01A	WSB1	chr17	25621461	+	MED1	chr17	37576171	-
In-frame	ENST00000296824	ENST00000310581		TCGA	RV	GBM	TCGA-06-2564-01A	CCDC127	chr5	216844	-	TERT	chr5	1282739	-
Frame-shit	ENST00000296824	ENST00000296820		TCGA	RV	GBM	TCGA-06-2564-01A	CCDC127	chr5	216844	-	TERT	chr5	1282739	-
In-frame	ENST00000296824	ENST00000334602		TCGA	RV	GBM	TCGA-06-2564-01A	CCDC127	chr5	216844	-	TERT	chr5	1282739	-
In-frame	ENST00000296824	ENST00000508104		TCGA	RV	GBM	TCGA-06-2564-01A	CCDC127	chr5	216844	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000296824	ENST00000522877		TCGA	RV	GBM	TCGA-06-2564-01A	CCDC127	chr5	216844	-	TERT	chr5	1282739	-
Frame-shit	ENST00000294304	ENST00000321297		TCGA	RV	GBM	TCGA-06-2561-01A	LRP5	chr11	68207384	+	ATG16L2	chr11	72539404	+
In-frame	ENST00000294304	ENST00000534905		TCGA	RV	GBM	TCGA-06-2561-01A	LRP5	chr11	68207384	+	ATG16L2	chr11	72539404	+
5CDS-intron	ENST00000294304	ENST00000451353		TCGA	RV	GBM	TCGA-06-2561-01A	LRP5	chr11	68207384	+	ATG16L2	chr11	72539404	+
intron-3CDS	ENST00000529481	ENST00000321297		TCGA	RV	GBM	TCGA-06-2561-01A	LRP5	chr11	68207384	+	ATG16L2	chr11	72539404	+
intron-3CDS	ENST00000529481	ENST00000534905		TCGA	RV	GBM	TCGA-06-2561-01A	LRP5	chr11	68207384	+	ATG16L2	chr11	72539404	+
intron-intron	ENST00000529481	ENST00000451353		TCGA	RV	GBM	TCGA-06-2561-01A	LRP5	chr11	68207384	+	ATG16L2	chr11	72539404	+
5CDS-5UTR	ENST00000464356	ENST00000527985		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000464356	ENST00000287169		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-intron	ENST00000464356	ENST00000527090		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000348159	ENST00000527985		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000348159	ENST00000287169		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-intron	ENST00000348159	ENST00000527090		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000353795	ENST00000527985		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000353795	ENST00000287169		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-intron	ENST00000353795	ENST00000527090		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000340875	ENST00000527985		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000340875	ENST00000287169		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-intron	ENST00000340875	ENST00000527090		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000368240	ENST00000527985		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000368240	ENST00000287169		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-intron	ENST00000368240	ENST00000527090		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000360595	ENST00000527985		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-5UTR	ENST00000360595	ENST00000287169		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
5CDS-intron	ENST00000360595	ENST00000527090		TCGA	RV	GBM	TCGA-27-2524-01A	MEF2D	chr1	156438572	-	ZDHHC5	chr11	57449894	+
Frame-shit	ENST00000394464	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000343796	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000415690	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000424646	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000504572	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000394466	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000231509	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000416954	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
Frame-shit	ENST00000503201	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
5UTR-3CDS	ENST00000504336	ENST00000289448		TCGA	RV	GBM	TCGA-27-1831-01A	NR3C1	chr5	142693567	-	HMHB1	chr5	143200045	+
5CDS-5UTR	ENST00000402685	ENST00000546373		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000402685	ENST00000551568		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000402685	ENST00000338356		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000402685	ENST00000549691		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000539469	ENST00000546373		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000539469	ENST00000551568		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000539469	ENST00000338356		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000539469	ENST00000549691		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000298919	ENST00000546373		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000298919	ENST00000551568		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000298919	ENST00000338356		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000298919	ENST00000549691		TCGA	RV	GBM	TCGA-26-5132-01A	PDZRN4	chr12	41949562	+	CPM	chr12	69326620	-
Frame-shit	ENST00000541529	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000541529	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000270776	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000270776	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000538557	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000538557	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-3CDS	ENST00000498356	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-3CDS	ENST00000498356	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-01A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
In-frame	ENST00000594800	ENST00000253861		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
In-frame	ENST00000594800	ENST00000539845		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
In-frame	ENST00000594800	ENST00000393161		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
5CDS-intron	ENST00000594800	ENST00000545148		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
5CDS-intron	ENST00000594800	ENST00000460346		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
5CDS-intron	ENST00000594800	ENST00000541309		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
3UTR-3CDS	ENST00000602069	ENST00000253861		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
3UTR-3CDS	ENST00000602069	ENST00000539845		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
3UTR-3CDS	ENST00000602069	ENST00000393161		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
3UTR-intron	ENST00000602069	ENST00000545148		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
3UTR-intron	ENST00000602069	ENST00000460346		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
3UTR-intron	ENST00000602069	ENST00000541309		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
In-frame	ENST00000357052	ENST00000253861		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
In-frame	ENST00000357052	ENST00000539845		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
In-frame	ENST00000357052	ENST00000393161		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
5CDS-intron	ENST00000357052	ENST00000545148		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
5CDS-intron	ENST00000357052	ENST00000460346		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
5CDS-intron	ENST00000357052	ENST00000541309		TCGA	RV	GBM	TCGA-19-0957-02A	RAB4B	chr19	41284296	+	EXOC4	chr7	133041084	+
In-frame	ENST00000401642	ENST00000326902		TCGA	RV	GBM	TCGA-76-4928-01B	SCFD2	chr4	54218765	-	GSX2	chr4	54967749	+
In-frame	ENST00000401642	ENST00000503800		TCGA	RV	GBM	TCGA-76-4928-01B	SCFD2	chr4	54218765	-	GSX2	chr4	54967749	+
5CDS-3UTR	ENST00000401642	ENST00000548609		TCGA	RV	GBM	TCGA-76-4928-01B	SCFD2	chr4	54218765	-	GSX2	chr4	54967749	+
In-frame	ENST00000388940	ENST00000326902		TCGA	RV	GBM	TCGA-76-4928-01B	SCFD2	chr4	54218765	-	GSX2	chr4	54967749	+
In-frame	ENST00000388940	ENST00000503800		TCGA	RV	GBM	TCGA-76-4928-01B	SCFD2	chr4	54218765	-	GSX2	chr4	54967749	+
5CDS-3UTR	ENST00000388940	ENST00000548609		TCGA	RV	GBM	TCGA-76-4928-01B	SCFD2	chr4	54218765	-	GSX2	chr4	54967749	+
5UTR-3CDS	ENST00000261716	ENST00000254066		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000261716	ENST00000394089		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000261716	ENST00000425707		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000261716	ENST00000394086		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000261716	ENST00000394081		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000261716	ENST00000420042		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000536202	ENST00000254066		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-3CDS	ENST00000536202	ENST00000394089		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000536202	ENST00000425707		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000536202	ENST00000394086		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000536202	ENST00000394081		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
5UTR-intron	ENST00000536202	ENST00000420042		TCGA	RV	GBM	TCGA-06-0141-01A	TAOK1	chr17	27718042	+	RARA	chr17	38504568	+
In-frame	ENST00000264951	ENST00000541742		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000264951	ENST00000490107		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000264951	ENST00000388985		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000264951	ENST00000366517		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000264951	ENST00000403792		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000392981	ENST00000541742		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000392981	ENST00000490107		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000392981	ENST00000388985		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000392981	ENST00000366517		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000392981	ENST00000403792		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000463916	ENST00000541742		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000463916	ENST00000490107		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000463916	ENST00000388985		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000463916	ENST00000366517		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000463916	ENST00000403792		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000544157	ENST00000541742		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000544157	ENST00000490107		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000544157	ENST00000388985		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-5UTR	ENST00000544157	ENST00000366517		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-intron	ENST00000544157	ENST00000403792		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000465074	ENST00000541742		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000465074	ENST00000490107		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000465074	ENST00000388985		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-5UTR	ENST00000465074	ENST00000366517		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
5UTR-intron	ENST00000465074	ENST00000403792		TCGA	RV	GBM	TCGA-14-1402-02A	XRN1	chr3	142166712	-	SMYD3	chr1	246093239	-
In-frame	ENST00000377674	ENST00000377828		TCGA	RV	GBM	TCGA-14-0786-01B	ZBTB48	chr1	6647351	+	ESPN	chr1	6488286	+
5CDS-intron	ENST00000377674	ENST00000461727		TCGA	RV	GBM	TCGA-14-0786-01B	ZBTB48	chr1	6647351	+	ESPN	chr1	6488286	+
5CDS-intron	ENST00000377674	ENST00000475228		TCGA	RV	GBM	TCGA-14-0786-01B	ZBTB48	chr1	6647351	+	ESPN	chr1	6488286	+
5CDS-intron	ENST00000377674	ENST00000416731		TCGA	RV	GBM	TCGA-14-0786-01B	ZBTB48	chr1	6647351	+	ESPN	chr1	6488286	+
In-frame	ENST00000344147	ENST00000373713		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
5CDS-5UTR	ENST00000344147	ENST00000497275		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
3UTR-3CDS	ENST00000479629	ENST00000373713		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
3UTR-5UTR	ENST00000479629	ENST00000497275		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
In-frame	ENST00000373714	ENST00000373713		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
5CDS-5UTR	ENST00000373714	ENST00000497275		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
In-frame	ENST00000546109	ENST00000373713		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
5CDS-5UTR	ENST00000546109	ENST00000497275		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
In-frame	ENST00000422613	ENST00000373713		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
5CDS-5UTR	ENST00000422613	ENST00000497275		TCGA	RV	GBM	TCGA-14-0786-01B	ZCCHC17	chr1	31792013	+	FABP3	chr1	31842404	-
intron-3CDS	ENST00000506722	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000506722	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-intron	ENST00000506722	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000394537	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000394537	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
5CDS-intron	ENST00000394537	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000357077	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000357077	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
5CDS-intron	ENST00000357077	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000264366	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000264366	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
5CDS-intron	ENST00000264366	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000509550	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000509550	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-intron	ENST00000509550	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000510275	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000510275	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-intron	ENST00000510275	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000504887	ENST00000336498		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-3CDS	ENST00000504887	ENST00000414545		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
intron-intron	ENST00000504887	ENST00000510076		TCGA	RV	GBM	TCGA-27-1830-01A	ANK2	chr4	113970968	+	ARHGAP10	chr4	148944414	+
In-frame	ENST00000261318	ENST00000398004		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SLC35E3	chr12	69145812	+
5CDS-intron	ENST00000261318	ENST00000538043		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SLC35E3	chr12	69145812	+
intron-3CDS	ENST00000548356	ENST00000398004		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SLC35E3	chr12	69145812	+
intron-intron	ENST00000548356	ENST00000538043		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SLC35E3	chr12	69145812	+
In-frame	ENST00000536380	ENST00000398004		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SLC35E3	chr12	69145812	+
5CDS-intron	ENST00000536380	ENST00000538043		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SLC35E3	chr12	69145812	+
In-frame	ENST00000276925	ENST00000264057		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
Frame-shit	ENST00000276925	ENST00000409813		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
5CDS-3UTR	ENST00000276925	ENST00000489613		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
intron-3CDS	ENST00000380142	ENST00000264057		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
intron-3CDS	ENST00000380142	ENST00000409813		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
intron-3UTR	ENST00000380142	ENST00000489613		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
intron-3CDS	ENST00000539462	ENST00000264057		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
intron-3CDS	ENST00000539462	ENST00000409813		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
intron-3UTR	ENST00000539462	ENST00000489613		TCGA	RV	GBM	TCGA-06-0155-01B	CDKN2B	chr9	22008797	-	DGKD	chr2	234296903	+
Frame-shit	ENST00000221466	ENST00000545387		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000221466	ENST00000402551		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000221466	ENST00000316273		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000221466	ENST00000597011		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000221466	ENST00000599246		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000221466	ENST00000598162		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
5CDS-intron	ENST00000221466	ENST00000601496		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000426395	ENST00000545387		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000426395	ENST00000402551		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000426395	ENST00000316273		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000426395	ENST00000597011		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000426395	ENST00000599246		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000426395	ENST00000598162		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
5CDS-intron	ENST00000426395	ENST00000601496		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-3CDS	ENST00000594823	ENST00000545387		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-3CDS	ENST00000594823	ENST00000402551		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-3CDS	ENST00000594823	ENST00000316273		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-3CDS	ENST00000594823	ENST00000597011		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-3CDS	ENST00000594823	ENST00000599246		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-3CDS	ENST00000594823	ENST00000598162		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
3UTR-intron	ENST00000594823	ENST00000601496		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000599988	ENST00000545387		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000599988	ENST00000402551		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000599988	ENST00000316273		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000599988	ENST00000597011		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000599988	ENST00000599246		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000599988	ENST00000598162		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-intron	ENST00000599988	ENST00000601496		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000596975	ENST00000545387		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000596975	ENST00000402551		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000596975	ENST00000316273		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000596975	ENST00000597011		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000596975	ENST00000599246		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-3CDS	ENST00000596975	ENST00000598162		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
intron-intron	ENST00000596975	ENST00000601496		TCGA	RV	GBM	TCGA-14-1402-02A	FCGRT	chr19	50017743	+	BCAT2	chr19	49303554	-
Frame-shit	ENST00000553277	ENST00000265351		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
5CDS-intron	ENST00000553277	ENST00000424378		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
Frame-shit	ENST00000243077	ENST00000265351		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
5CDS-intron	ENST00000243077	ENST00000424378		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
Frame-shit	ENST00000338962	ENST00000265351		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
5CDS-intron	ENST00000338962	ENST00000424378		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
Frame-shit	ENST00000554174	ENST00000265351		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
5CDS-intron	ENST00000554174	ENST00000424378		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
intron-3CDS	ENST00000553446	ENST00000265351		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
intron-intron	ENST00000553446	ENST00000424378		TCGA	RV	GBM	TCGA-06-0686-01A	LRP1	chr12	57539273	+	XPO5	chr6	43530083	-
Frame-shit	ENST00000378536	ENST00000291386		TCGA	RV	GBM	TCGA-06-2565-01A	SKI	chr1	2161174	+	SSU72	chr1	1500296	-
In-frame	ENST00000378536	ENST00000359060		TCGA	RV	GBM	TCGA-06-2565-01A	SKI	chr1	2161174	+	SSU72	chr1	1500296	-
intron-3CDS	ENST00000478223	ENST00000291386		TCGA	RV	GBM	TCGA-06-2565-01A	SKI	chr1	2161174	+	SSU72	chr1	1500296	-
intron-3CDS	ENST00000478223	ENST00000359060		TCGA	RV	GBM	TCGA-06-2565-01A	SKI	chr1	2161174	+	SSU72	chr1	1500296	-
In-frame	ENST00000457580	ENST00000449052		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000443370		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000349350		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000348028		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000421100		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000427578		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000546292		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000546213		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000538115		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000457580	ENST00000542585		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000449052		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000443370		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000349350		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000348028		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000421100		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000427578		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000546292		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000546213		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000538115		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000388793	ENST00000542585		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000449052		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000443370		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000349350		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000348028		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000421100		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000427578		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000546292		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000546213		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000538115		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000432932	ENST00000542585		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000449052		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000443370		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000349350		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000348028		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000421100		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000427578		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000546292		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000546213		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000538115		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
In-frame	ENST00000347433	ENST00000542585		TCGA	RV	GBM	TCGA-28-2499-01A	SRRT	chr7	100473333	+	ZAN	chr7	100377068	+
intron-5UTR	ENST00000511642	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000511642	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000511642	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000511642	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000511642	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000415497	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000415497	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000415497	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000415497	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000415497	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000372988	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000372988	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000372988	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000372988	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000372988	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000510503	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000510503	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000510503	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000510503	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000510503	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000511686	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-5UTR	ENST00000511686	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000511686	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000511686	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
5UTR-intron	ENST00000511686	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000372991	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000372991	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000372991	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000372991	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000372991	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000372987	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000372987	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000372987	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000372987	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000372987	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000414200	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000414200	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000414200	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000414200	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000414200	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	CCND3	chr6	42016239	-	C6orf89	chr6	36846784	+
Frame-shit	ENST00000246069	ENST00000296824		TCGA	RV	GBM	TCGA-06-2564-01A	DSTN	chr20	17550856	+	CCDC127	chr5	206073	-
5UTR-3CDS	ENST00000474024	ENST00000296824		TCGA	RV	GBM	TCGA-06-2564-01A	DSTN	chr20	17550856	+	CCDC127	chr5	206073	-
Frame-shit	ENST00000440314	ENST00000261250		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
Frame-shit	ENST00000440314	ENST00000545746		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
5CDS-intron	ENST00000440314	ENST00000509318		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
Frame-shit	ENST00000444507	ENST00000261250		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
Frame-shit	ENST00000444507	ENST00000545746		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
5CDS-intron	ENST00000444507	ENST00000509318		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
Frame-shit	ENST00000252322	ENST00000261250		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
Frame-shit	ENST00000252322	ENST00000545746		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
5CDS-intron	ENST00000252322	ENST00000509318		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
intron-3CDS	ENST00000514026	ENST00000261250		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
intron-3CDS	ENST00000514026	ENST00000545746		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
intron-intron	ENST00000514026	ENST00000509318		TCGA	RV	GBM	TCGA-06-5856-01A	EFCAB4B	chr12	3782612	-	C12orf4	chr12	4600400	-
In-frame	ENST00000405709	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000405709	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000405709	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000405709	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000405709	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000405709	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000405709	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000405709	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000331762	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000331762	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000331762	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000331762	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000331762	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000331762	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000331762	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000331762	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
Frame-shit	ENST00000452895	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
Frame-shit	ENST00000452895	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
Frame-shit	ENST00000452895	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
Frame-shit	ENST00000452895	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
Frame-shit	ENST00000452895	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000452895	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000452895	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000452895	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000415362	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000415362	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000415362	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000415362	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000415362	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000415362	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000415362	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000415362	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000447215	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000447215	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000447215	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000447215	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000447215	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000447215	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000447215	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000447215	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000437687	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000437687	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000437687	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000437687	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000437687	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000437687	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000437687	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000437687	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000489381	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000489381	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000489381	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000489381	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-3CDS	ENST00000489381	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000489381	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000489381	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
intron-intron	ENST00000489381	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000450877	ENST00000447467		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000450877	ENST00000324972		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000450877	ENST00000537881		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000450877	ENST00000437599		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
In-frame	ENST00000450877	ENST00000359388		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000450877	ENST00000413338		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000450877	ENST00000457059		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
5CDS-intron	ENST00000450877	ENST00000497626		TCGA	RV	GBM	TCGA-06-0184-01A	IMMP2L	chr7	110526649	-	DYNC1I1	chr7	95657487	+
Frame-shit	ENST00000438925	ENST00000370597		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000438925	ENST00000298819		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000438925	ENST00000370591		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5CDS-intron	ENST00000438925	ENST00000468549		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
In-frame	ENST00000370782	ENST00000370597		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
In-frame	ENST00000370782	ENST00000298819		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
In-frame	ENST00000370782	ENST00000370591		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5CDS-intron	ENST00000370782	ENST00000468549		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000327238	ENST00000370597		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000327238	ENST00000298819		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000327238	ENST00000370591		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5CDS-intron	ENST00000327238	ENST00000468549		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5UTR-3CDS	ENST00000327277	ENST00000370597		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5UTR-3CDS	ENST00000327277	ENST00000298819		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5UTR-3CDS	ENST00000327277	ENST00000370591		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5UTR-intron	ENST00000327277	ENST00000468549		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000355839	ENST00000370597		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000355839	ENST00000298819		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
Frame-shit	ENST00000355839	ENST00000370591		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5CDS-intron	ENST00000355839	ENST00000468549		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
intron-3CDS	ENST00000483626	ENST00000370597		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
intron-3CDS	ENST00000483626	ENST00000298819		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
intron-3CDS	ENST00000483626	ENST00000370591		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
intron-intron	ENST00000483626	ENST00000468549		TCGA	RV	GBM	TCGA-06-0214-01A	MMS19	chr10	99258030	-	CRTAC1	chr10	99667904	-
5CDS-5UTR	ENST00000330579	ENST00000257549		TCGA	RV	GBM	TCGA-06-0129-01A	NOC4L	chr12	132629150	+	SDS	chr12	113837515	-
intron-5UTR	ENST00000535343	ENST00000257549		TCGA	RV	GBM	TCGA-06-0129-01A	NOC4L	chr12	132629150	+	SDS	chr12	113837515	-
intron-5UTR	ENST00000538784	ENST00000257549		TCGA	RV	GBM	TCGA-06-0129-01A	NOC4L	chr12	132629150	+	SDS	chr12	113837515	-
intron-intron	ENST00000413953	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000413953	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000413953	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000413953	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000347140	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000347140	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000347140	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000347140	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000358907	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000358907	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000358907	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000358907	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000402412	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000402412	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000402412	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000402412	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000441731	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000441731	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000441731	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000441731	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000403821	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000403821	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000403821	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000403821	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000546843	ENST00000448662		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000431808		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000284776		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000437304		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000319471		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000449407		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000355634		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000546843	ENST00000393528		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000546843	ENST00000418609		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
intron-intron	ENST00000546843	ENST00000498125		TCGA	RV	GBM	TCGA-06-0178-01A	R3HDM2	chr12	57704047	-	SORBS2	chr4	186696520	-
Frame-shit	ENST00000376957	ENST00000554684		TCGA	RV	GBM	TCGA-08-0386-01A	SRM	chr1	11118857	-	SMEK1	chr14	91957146	-
Frame-shit	ENST00000376957	ENST00000428424		TCGA	RV	GBM	TCGA-08-0386-01A	SRM	chr1	11118857	-	SMEK1	chr14	91957146	-
Frame-shit	ENST00000376957	ENST00000337238		TCGA	RV	GBM	TCGA-08-0386-01A	SRM	chr1	11118857	-	SMEK1	chr14	91957146	-
Frame-shit	ENST00000376957	ENST00000554943		TCGA	RV	GBM	TCGA-08-0386-01A	SRM	chr1	11118857	-	SMEK1	chr14	91957146	-
Frame-shit	ENST00000376957	ENST00000555462		TCGA	RV	GBM	TCGA-08-0386-01A	SRM	chr1	11118857	-	SMEK1	chr14	91957146	-
5CDS-intron	ENST00000376957	ENST00000555718		TCGA	RV	GBM	TCGA-08-0386-01A	SRM	chr1	11118857	-	SMEK1	chr14	91957146	-
3UTR-5UTR	ENST00000555245	ENST00000399782		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-5UTR	ENST00000555245	ENST00000317582		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-5UTR	ENST00000555245	ENST00000543133		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-5UTR	ENST00000555245	ENST00000538149		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-5UTR	ENST00000555245	ENST00000337612		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-5UTR	ENST00000555245	ENST00000493680		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-5UTR	ENST00000555245	ENST00000355028		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-intron	ENST00000555245	ENST00000418951		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
3UTR-intron	ENST00000555245	ENST00000485631		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000399782		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000317582		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000543133		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000538149		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000337612		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000493680		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000556605	ENST00000355028		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-intron	ENST00000556605	ENST00000418951		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-intron	ENST00000556605	ENST00000485631		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000399782		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000317582		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000543133		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000538149		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000337612		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000493680		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000336643	ENST00000355028		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-intron	ENST00000336643	ENST00000418951		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-intron	ENST00000336643	ENST00000485631		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000399782		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000317582		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000543133		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000538149		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000337612		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000493680		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-5UTR	ENST00000031146	ENST00000355028		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-intron	ENST00000031146	ENST00000418951		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
intron-intron	ENST00000031146	ENST00000485631		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000399782		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000317582		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000543133		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000538149		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000337612		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000493680		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-5UTR	ENST00000557046	ENST00000355028		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-intron	ENST00000557046	ENST00000418951		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
5CDS-intron	ENST00000557046	ENST00000485631		TCGA	RV	GBM	TCGA-06-1804-01A	SLC39A9	chr14	69908983	+	BCL2L13	chr22	18138428	+
Frame-shit	ENST00000196169	ENST00000378720		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000196169	ENST00000378697		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
5CDS-intron	ENST00000196169	ENST00000495654		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000377894	ENST00000378720		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000377894	ENST00000378697		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
5CDS-intron	ENST00000377894	ENST00000495654		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000535286	ENST00000378720		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000535286	ENST00000378697		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
5CDS-intron	ENST00000535286	ENST00000495654		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000377881	ENST00000378720		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
Frame-shit	ENST00000377881	ENST00000378697		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
5CDS-intron	ENST00000377881	ENST00000495654		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
intron-3CDS	ENST00000463109	ENST00000378720		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
intron-3CDS	ENST00000463109	ENST00000378697		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
intron-intron	ENST00000463109	ENST00000495654		TCGA	RV	GBM	TCGA-06-1804-01A	TDRD3	chr13	61109367	+	ESD	chr13	47345631	-
5UTR-intron	ENST00000547303	ENST00000543426		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000547303	ENST00000228682		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000547303	ENST00000546141		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-intron	ENST00000551116	ENST00000543426		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000551116	ENST00000228682		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000551116	ENST00000546141		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-intron	ENST00000346473	ENST00000543426		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000346473	ENST00000228682		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000346473	ENST00000546141		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-intron	ENST00000552740	ENST00000543426		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000552740	ENST00000228682		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000552740	ENST00000546141		TCGA	RV	GBM	TCGA-06-5859-01A	DDIT3	chr12	57914201	-	GLI1	chr12	57857448	+
In-frame	ENST00000303460	ENST00000408946		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
In-frame	ENST00000303460	ENST00000398213		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000303460	ENST00000302533		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000303460	ENST00000557259		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000303460	ENST00000547925		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
5CDS-intron	ENST00000303460	ENST00000454792		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
intron-3CDS	ENST00000511575	ENST00000408946		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
intron-3CDS	ENST00000511575	ENST00000398213		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000511575	ENST00000302533		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000511575	ENST00000557259		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000511575	ENST00000547925		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
intron-intron	ENST00000511575	ENST00000454792		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC10	chr12	54379794	+	WIBG	chr12	56297264	-
Frame-shit	ENST00000549396	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
Frame-shit	ENST00000549396	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
In-frame	ENST00000550584	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
Frame-shit	ENST00000550584	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000549325	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000549325	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000545296	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000545296	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000550359	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000550359	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000407050	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000407050	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000333447	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000333447	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
In-frame	ENST00000548586	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
Frame-shit	ENST00000548586	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000443686	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000443686	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
In-frame	ENST00000552948	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
Frame-shit	ENST00000552948	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000541570	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000541570	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000541017	ENST00000324472		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
intron-3CDS	ENST00000541017	ENST00000413230		TCGA	RV	GBM	TCGA-06-0129-01A	PPFIA2	chr12	82070570	-	DPY19L2	chr12	63954442	-
5CDS-intron	ENST00000293677	ENST00000586702		TCGA	RV	GBM	TCGA-06-1804-01A	RAVER1	chr19	10439318	-	DOCK6	chr19	11356554	-
5CDS-intron	ENST00000293677	ENST00000294618		TCGA	RV	GBM	TCGA-06-1804-01A	RAVER1	chr19	10439318	-	DOCK6	chr19	11356554	-
5CDS-intron	ENST00000293677	ENST00000319867		TCGA	RV	GBM	TCGA-06-1804-01A	RAVER1	chr19	10439318	-	DOCK6	chr19	11356554	-
In-frame	ENST00000537081	ENST00000253083		TCGA	RV	GBM	TCGA-06-0129-01A	AVIL	chr12	58200143	-	HIP1R	chr12	123332578	+
5CDS-intron	ENST00000537081	ENST00000537322		TCGA	RV	GBM	TCGA-06-0129-01A	AVIL	chr12	58200143	-	HIP1R	chr12	123332578	+
In-frame	ENST00000257861	ENST00000253083		TCGA	RV	GBM	TCGA-06-0129-01A	AVIL	chr12	58200143	-	HIP1R	chr12	123332578	+
5CDS-intron	ENST00000257861	ENST00000537322		TCGA	RV	GBM	TCGA-06-0129-01A	AVIL	chr12	58200143	-	HIP1R	chr12	123332578	+
5UTR-3CDS	ENST00000550083	ENST00000253083		TCGA	RV	GBM	TCGA-06-0129-01A	AVIL	chr12	58200143	-	HIP1R	chr12	123332578	+
5UTR-intron	ENST00000550083	ENST00000537322		TCGA	RV	GBM	TCGA-06-0129-01A	AVIL	chr12	58200143	-	HIP1R	chr12	123332578	+
Frame-shit	ENST00000409790	ENST00000283033		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000409790	ENST00000356957		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
5CDS-5UTR	ENST00000409790	ENST00000570917		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000409552	ENST00000283033		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000409552	ENST00000356957		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
5CDS-5UTR	ENST00000409552	ENST00000570917		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000465491	ENST00000283033		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000465491	ENST00000356957		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-5UTR	ENST00000465491	ENST00000570917		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000381822	ENST00000283033		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000381822	ENST00000356957		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-5UTR	ENST00000381822	ENST00000570917		TCGA	RV	GBM	TCGA-41-5651-01A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
5UTR-3CDS	ENST00000064778	ENST00000566228		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000064778	ENST00000323433		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000064778	ENST00000306030		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-intron	ENST00000064778	ENST00000568359		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000450446	ENST00000566228		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000450446	ENST00000323433		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000450446	ENST00000306030		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-intron	ENST00000450446	ENST00000568359		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000356467	ENST00000566228		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000356467	ENST00000323433		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-3CDS	ENST00000356467	ENST00000306030		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5UTR-intron	ENST00000356467	ENST00000568359		TCGA	RV	GBM	TCGA-06-0125-02A	FAM168A	chr11	73308968	-	SNX29	chr16	12571576	+
5CDS-5UTR	ENST00000425759	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000425759	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000425759	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000425759	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000425759	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000425759	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000425759	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000292733	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000292733	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000292733	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000292733	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000292733	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000292733	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000292733	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-5UTR	ENST00000542773	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-5UTR	ENST00000542773	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-5UTR	ENST00000542773	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-5UTR	ENST00000542773	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-5UTR	ENST00000542773	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-intron	ENST00000542773	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-intron	ENST00000542773	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000263205	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000263205	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000263205	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000263205	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000263205	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000263205	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000263205	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000406969	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000406969	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000406969	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000406969	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000406969	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000406969	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000406969	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000382974	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000382974	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000382974	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000382974	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000382974	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000382974	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000382974	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000541476	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000541476	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000541476	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000541476	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-5UTR	ENST00000541476	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000541476	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5CDS-intron	ENST00000541476	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-5UTR	ENST00000478831	ENST00000361682		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-5UTR	ENST00000478831	ENST00000403184		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-5UTR	ENST00000478831	ENST00000403710		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-5UTR	ENST00000478831	ENST00000407537		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-5UTR	ENST00000478831	ENST00000406520		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-intron	ENST00000478831	ENST00000449653		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
intron-intron	ENST00000478831	ENST00000493893		TCGA	RV	GBM	TCGA-32-2638-01A	MED15	chr22	20891491	+	COMT	chr22	19948722	+
5UTR-5UTR	ENST00000338586	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000338515	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367171	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367169	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000539706	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000339876	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367170	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000360049	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367172	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000403080	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000404076	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000401399	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000404907	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000513543	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000495396	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-02A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
Frame-shit	ENST00000541529	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000541529	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000541529	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000270776	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000270776	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000270776	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000538557	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
Frame-shit	ENST00000538557	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
5CDS-intron	ENST00000538557	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-3CDS	ENST00000498356	ENST00000303635		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-3CDS	ENST00000498356	ENST00000439411		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000476163		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000557126		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000473578		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000467404		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
intron-intron	ENST00000498356	ENST00000476864		TCGA	RV	GBM	TCGA-06-0190-02A	PGD	chr1	10459761	+	CAMTA1	chr1	7309551	+
In-frame	ENST00000373635	ENST00000341772		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
5CDS-intron	ENST00000373635	ENST00000482831		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
In-frame	ENST00000308696	ENST00000341772		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
5CDS-intron	ENST00000308696	ENST00000482831		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
In-frame	ENST00000409643	ENST00000341772		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
5CDS-intron	ENST00000409643	ENST00000482831		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
intron-3CDS	ENST00000488354	ENST00000341772		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
intron-intron	ENST00000488354	ENST00000482831		TCGA	RV	GBM	TCGA-27-1830-01A	PSMD1	chr2	231945028	+	DNER	chr2	230377652	-
In-frame	ENST00000336199	ENST00000331110		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000348120		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000366563		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000366564		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000366565		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000446183		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000366562		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000401882		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000336199	ENST00000407727		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000331110		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000348120		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000366563		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000366564		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000366565		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000446183		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000366562		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000401882		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000366540	ENST00000407727		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000331110		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000348120		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000366563		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000366564		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000366565		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000446183		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000366562		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000401882		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000366539	ENST00000407727		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000331110		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000348120		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000366563		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000366564		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000366565		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000446183		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000366562		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000401882		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
In-frame	ENST00000263826	ENST00000407727		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000331110		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000348120		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000366563		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000366564		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000366565		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000446183		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000366562		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000401882		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000492957	ENST00000407727		TCGA	RV	GBM	TCGA-06-0216-01B	AKT3	chr1	244006427	-	RGS7	chr1	240990472	-
Frame-shit	ENST00000321949	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000321949	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000321949	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
5CDS-3UTR	ENST00000321949	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000338797	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000338797	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000338797	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
5CDS-3UTR	ENST00000338797	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000594658	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000594658	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000594658	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3UTR	ENST00000594658	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000601916	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000601916	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000601916	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3UTR	ENST00000601916	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-02A	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
In-frame	ENST00000373381	ENST00000374076		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
In-frame	ENST00000373381	ENST00000608611		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000373380	ENST00000374076		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000373380	ENST00000608611		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000373377	ENST00000374076		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000373377	ENST00000608611		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000373388	ENST00000374076		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000373388	ENST00000608611		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000489419	ENST00000374076		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000489419	ENST00000608611		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000338325	ENST00000374076		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
intron-3CDS	ENST00000338325	ENST00000608611		TCGA	RV	GBM	TCGA-28-2514-01A	CSMD2	chr1	34312485	-	TMEM222	chr1	27657211	+
In-frame	ENST00000380648	ENST00000358864		TCGA	RV	GBM	TCGA-06-0747-01A	EBF4	chr20	2674428	+	TMC2	chr20	2621780	+
5CDS-intron	ENST00000380648	ENST00000496948		TCGA	RV	GBM	TCGA-06-0747-01A	EBF4	chr20	2674428	+	TMC2	chr20	2621780	+
In-frame	ENST00000609451	ENST00000358864		TCGA	RV	GBM	TCGA-06-0747-01A	EBF4	chr20	2674428	+	TMC2	chr20	2621780	+
5CDS-intron	ENST00000609451	ENST00000496948		TCGA	RV	GBM	TCGA-06-0747-01A	EBF4	chr20	2674428	+	TMC2	chr20	2621780	+
intron-3CDS	ENST00000477287	ENST00000358864		TCGA	RV	GBM	TCGA-06-0747-01A	EBF4	chr20	2674428	+	TMC2	chr20	2621780	+
intron-intron	ENST00000477287	ENST00000496948		TCGA	RV	GBM	TCGA-06-0747-01A	EBF4	chr20	2674428	+	TMC2	chr20	2621780	+
In-frame	ENST00000454000	ENST00000544305		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000454000	ENST00000374630		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000454000	ENST00000400191		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000454000	ENST00000374632		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000454000	ENST00000374627		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5CDS-3UTR	ENST00000454000	ENST00000465676		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5UTR-3CDS	ENST00000318220	ENST00000544305		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5UTR-3CDS	ENST00000318220	ENST00000374630		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5UTR-3CDS	ENST00000318220	ENST00000400191		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5UTR-3CDS	ENST00000318220	ENST00000374632		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5UTR-3CDS	ENST00000318220	ENST00000374627		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5UTR-3UTR	ENST00000318220	ENST00000465676		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
3UTR-3CDS	ENST00000478653	ENST00000544305		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
3UTR-3CDS	ENST00000478653	ENST00000374630		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
3UTR-3CDS	ENST00000478653	ENST00000400191		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
3UTR-3CDS	ENST00000478653	ENST00000374632		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
3UTR-3CDS	ENST00000478653	ENST00000374627		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
3UTR-3UTR	ENST00000478653	ENST00000465676		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000318249	ENST00000544305		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000318249	ENST00000374630		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000318249	ENST00000400191		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000318249	ENST00000374632		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000318249	ENST00000374627		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5CDS-3UTR	ENST00000318249	ENST00000465676		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000342104	ENST00000544305		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000342104	ENST00000374630		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000342104	ENST00000400191		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000342104	ENST00000374632		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
In-frame	ENST00000342104	ENST00000374627		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5CDS-3UTR	ENST00000342104	ENST00000465676		TCGA	RV	GBM	TCGA-28-2513-01A	NBPF3	chr1	21771712	+	EPHB2	chr1	23189530	+
5CDS-intron	ENST00000379540	ENST00000481295		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379540	ENST00000379124		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379540	ENST00000379126		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379540	ENST00000379127		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379540	ENST00000379133		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379540	ENST00000297623		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379521	ENST00000481295		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379521	ENST00000379124		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379521	ENST00000379126		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379521	ENST00000379127		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379521	ENST00000379133		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000379521	ENST00000297623		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000318524	ENST00000481295		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000318524	ENST00000379124		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000318524	ENST00000379126		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000318524	ENST00000379127		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000318524	ENST00000379133		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
5CDS-intron	ENST00000318524	ENST00000297623		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
intron-intron	ENST00000463421	ENST00000481295		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
intron-intron	ENST00000463421	ENST00000379124		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
intron-intron	ENST00000463421	ENST00000379126		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
intron-intron	ENST00000463421	ENST00000379127		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
intron-intron	ENST00000463421	ENST00000379133		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
intron-intron	ENST00000463421	ENST00000297623		TCGA	RV	GBM	TCGA-12-3652-01A	NFX1	chr9	33295425	+	C9orf24	chr9	34382867	-
In-frame	ENST00000371927	ENST00000308448		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371927	ENST00000328142		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371927	ENST00000400215		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000371927	ENST00000541004		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000371927	ENST00000495903		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371926	ENST00000308448		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371926	ENST00000328142		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371926	ENST00000400215		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000371926	ENST00000541004		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000371926	ENST00000495903		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000461650	ENST00000308448		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000461650	ENST00000328142		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000461650	ENST00000400215		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000461650	ENST00000541004		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000461650	ENST00000495903		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371924	ENST00000308448		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371924	ENST00000328142		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000371924	ENST00000400215		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000371924	ENST00000541004		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000371924	ENST00000495903		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000371922	ENST00000308448		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000371922	ENST00000328142		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000371922	ENST00000400215		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000371922	ENST00000541004		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000371922	ENST00000495903		TCGA	RV	GBM	TCGA-06-0648-01A	STAMBPL1	chr10	90661495	+	ATAD1	chr10	89516679	-
In-frame	ENST00000333538	ENST00000433360		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
In-frame	ENST00000333538	ENST00000340694		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
In-frame	ENST00000333538	ENST00000424654		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
In-frame	ENST00000333538	ENST00000433881		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
In-frame	ENST00000333538	ENST00000289495		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
In-frame	ENST00000333538	ENST00000456331		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
3UTR-3CDS	ENST00000498380	ENST00000433360		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
3UTR-3CDS	ENST00000498380	ENST00000340694		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
3UTR-3CDS	ENST00000498380	ENST00000424654		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
3UTR-3CDS	ENST00000498380	ENST00000433881		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
3UTR-3CDS	ENST00000498380	ENST00000289495		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
3UTR-3CDS	ENST00000498380	ENST00000456331		TCGA	RV	GBM	TCGA-19-2619-01A	WBSCR17	chr7	70800719	+	PPP1R9A	chr7	94827661	+
5CDS-intron	ENST00000393829	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000393829	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000393829	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000393829	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000393829	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000393829	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000546249	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000546249	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000546249	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000546249	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000546249	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000546249	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000537728	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000537728	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000537728	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000537728	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000537728	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000537728	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000264649	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000264649	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000264649	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000264649	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000264649	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000264649	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000585525	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000585525	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000585525	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000585525	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000585525	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000585525	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000343619	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000343619	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000343619	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000343619	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000343619	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
5CDS-intron	ENST00000343619	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000544137	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000544137	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000544137	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000544137	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000544137	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000544137	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000587797	ENST00000401702		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000587797	ENST00000397326		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000587797	ENST00000397328		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000587797	ENST00000359787		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000587797	ENST00000406324		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
intron-intron	ENST00000587797	ENST00000472240		TCGA	RV	GBM	TCGA-14-0787-01A	ATP6V0A1	chr17	40622236	+	MB	chr22	36033255	-
In-frame	ENST00000423902	ENST00000361421		TCGA	RV	GBM	TCGA-06-5414-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000524602	ENST00000361421		TCGA	RV	GBM	TCGA-06-5414-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000525508	ENST00000361421		TCGA	RV	GBM	TCGA-06-5414-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
intron-3CDS	ENST00000529472	ENST00000361421		TCGA	RV	GBM	TCGA-06-5414-01A	CHD7	chr8	61655656	+	TOX	chr8	59872567	-
In-frame	ENST00000399262	ENST00000277746		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5CDS-intron	ENST00000399262	ENST00000435510		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
intron-3CDS	ENST00000402544	ENST00000277746		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
intron-intron	ENST00000402544	ENST00000435510		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5UTR-3CDS	ENST00000399251	ENST00000277746		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5UTR-intron	ENST00000399251	ENST00000435510		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5UTR-3CDS	ENST00000542921	ENST00000277746		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5UTR-intron	ENST00000542921	ENST00000435510		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5UTR-3CDS	ENST00000489372	ENST00000277746		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
5UTR-intron	ENST00000489372	ENST00000435510		TCGA	RV	GBM	TCGA-76-4929-01A	JMJD1C	chr10	65024411	-	NRBF2	chr10	64905969	+
Frame-shit	ENST00000332180	ENST00000266674		TCGA	RV	GBM	TCGA-06-0129-01A	KIAA1033	chr12	105538650	+	LGR5	chr12	71928895	+
Frame-shit	ENST00000332180	ENST00000536515		TCGA	RV	GBM	TCGA-06-0129-01A	KIAA1033	chr12	105538650	+	LGR5	chr12	71928895	+
Frame-shit	ENST00000332180	ENST00000540815		TCGA	RV	GBM	TCGA-06-0129-01A	KIAA1033	chr12	105538650	+	LGR5	chr12	71928895	+
intron-3CDS	ENST00000547171	ENST00000266674		TCGA	RV	GBM	TCGA-06-0129-01A	KIAA1033	chr12	105538650	+	LGR5	chr12	71928895	+
intron-3CDS	ENST00000547171	ENST00000536515		TCGA	RV	GBM	TCGA-06-0129-01A	KIAA1033	chr12	105538650	+	LGR5	chr12	71928895	+
intron-3CDS	ENST00000547171	ENST00000540815		TCGA	RV	GBM	TCGA-06-0129-01A	KIAA1033	chr12	105538650	+	LGR5	chr12	71928895	+
In-frame	ENST00000405201	ENST00000308736		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
In-frame	ENST00000405201	ENST00000544745		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000404621	ENST00000308736		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000404621	ENST00000544745		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
5UTR-3CDS	ENST00000404121	ENST00000308736		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
5UTR-3CDS	ENST00000404121	ENST00000544745		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000356219	ENST00000308736		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000356219	ENST00000544745		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000397355	ENST00000308736		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000397355	ENST00000544745		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000429285	ENST00000308736		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000429285	ENST00000544745		TCGA	RV	GBM	TCGA-06-0878-01A	NCOR2	chr12	124950719	-	DHX37	chr12	125450358	-
Frame-shit	ENST00000262051	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262051	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000262051	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262051	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262051	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262051	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262051	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
In-frame	ENST00000547198	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547198	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000547198	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547198	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547198	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547198	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547198	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
Frame-shit	ENST00000262052	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262052	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000262052	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262052	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262052	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262052	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000262052	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
Frame-shit	ENST00000394904	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000394904	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000394904	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000394904	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000394904	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000394904	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000394904	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
Frame-shit	ENST00000547688	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547688	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000547688	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547688	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547688	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547688	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000547688	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
In-frame	ENST00000541174	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000541174	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000541174	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000541174	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000541174	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000541174	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000541174	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
Frame-shit	ENST00000545993	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000545993	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000545993	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000545993	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000545993	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000545993	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000545993	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
In-frame	ENST00000546743	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000546743	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-3UTR	ENST00000546743	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000546743	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000546743	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000546743	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
5CDS-5UTR	ENST00000546743	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-3CDS	ENST00000549193	ENST00000340802		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-5UTR	ENST00000549193	ENST00000359794		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-3UTR	ENST00000549193	ENST00000551548		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-5UTR	ENST00000549193	ENST00000395233		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-5UTR	ENST00000549193	ENST00000551804		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-5UTR	ENST00000549193	ENST00000547587		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
intron-5UTR	ENST00000549193	ENST00000312352		TCGA	RV	GBM	TCGA-06-0129-01A	SLC11A2	chr12	51386593	-	PFKM	chr12	48516550	+
Frame-shit	ENST00000262144	ENST00000380483		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
Frame-shit	ENST00000262144	ENST00000380485		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
Frame-shit	ENST00000262144	ENST00000380488		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
Frame-shit	ENST00000262144	ENST00000546332		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
5CDS-5UTR	ENST00000262144	ENST00000473862		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
intron-3CDS	ENST00000562331	ENST00000380483		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
intron-3CDS	ENST00000562331	ENST00000380485		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
intron-3CDS	ENST00000562331	ENST00000380488		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
intron-3CDS	ENST00000562331	ENST00000546332		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
intron-5UTR	ENST00000562331	ENST00000473862		TCGA	RV	GBM	TCGA-06-2569-01A	WDR59	chr16	74942806	-	ASB9	chrX	15272966	-
Frame-shit	ENST00000268070	ENST00000374431		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
Frame-shit	ENST00000268070	ENST00000541779		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
Frame-shit	ENST00000268070	ENST00000374430		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
Frame-shit	ENST00000268070	ENST00000358883		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
Frame-shit	ENST00000268070	ENST00000538760		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000559976	ENST00000374431		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000559976	ENST00000541779		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000559976	ENST00000374430		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000559976	ENST00000358883		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000559976	ENST00000538760		TCGA	RV	GBM	TCGA-14-1034-02B	ADAMTS17	chr15	100589062	-	LPAR1	chr9	113638002	-
5UTR-5UTR	ENST00000357681	ENST00000338586		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000338515		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000367171		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000367169		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000539706		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000339876		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000367170		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000360049		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000367172		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000403080		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000404076		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000357681	ENST00000401399		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000357681	ENST00000404907		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000357681	ENST00000513543		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000357681	ENST00000495396		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000338586		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000338515		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000367171		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000367169		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000539706		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000339876		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000367170		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000360049		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000367172		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000403080		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000404076		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000391954	ENST00000401399		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000391954	ENST00000404907		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000391954	ENST00000513543		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000391954	ENST00000495396		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000338586		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000338515		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000367171		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000367169		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000539706		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000339876		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000367170		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000360049		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000367172		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000403080		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000404076		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367218	ENST00000401399		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000367218	ENST00000404907		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000367218	ENST00000513543		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000367218	ENST00000495396		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000338586		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000338515		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000367171		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000367169		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000539706		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000339876		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000367170		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000360049		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000367172		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000403080		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000404076		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-5UTR	ENST00000367219	ENST00000401399		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000367219	ENST00000404907		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000367219	ENST00000513543		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
5UTR-intron	ENST00000367219	ENST00000495396		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000338586		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000338515		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000367171		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000367169		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000539706		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000339876		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000367170		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000360049		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000367172		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000403080		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000404076		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000341360	ENST00000401399		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-intron	ENST00000341360	ENST00000404907		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-intron	ENST00000341360	ENST00000513543		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-intron	ENST00000341360	ENST00000495396		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000338586		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000338515		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000367171		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000367169		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000539706		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000339876		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000367170		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000360049		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000367172		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000403080		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000404076		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-5UTR	ENST00000466407	ENST00000401399		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-intron	ENST00000466407	ENST00000404907		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-intron	ENST00000466407	ENST00000513543		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
intron-intron	ENST00000466407	ENST00000495396		TCGA	RV	GBM	TCGA-06-5411-01A	ATP2B4	chr1	203596347	+	NFASC	chr1	204889760	+
Frame-shit	ENST00000321949	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000321949	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000321949	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
5CDS-3UTR	ENST00000321949	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000338797	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000338797	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
Frame-shit	ENST00000338797	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
5CDS-3UTR	ENST00000338797	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000594658	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000594658	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000594658	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3UTR	ENST00000594658	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000601916	ENST00000300976		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000601916	ENST00000595182		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3CDS	ENST00000601916	ENST00000599006		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
intron-3UTR	ENST00000601916	ENST00000596843		TCGA	RV	GBM	TCGA-06-0211-01B	CRTC1	chr19	18794638	+	KLHL26	chr19	18775071	+
In-frame	ENST00000371191	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371191	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371191	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000371191	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000407417	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000407417	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000407417	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000407417	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-3CDS	ENST00000479364	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-3CDS	ENST00000479364	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-3CDS	ENST00000479364	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-5UTR	ENST00000479364	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371189	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371189	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371189	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000371189	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000403491	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000403491	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000403491	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000403491	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371187	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371187	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371187	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000371187	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000485903	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000485903	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000485903	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000485903	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371185	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371185	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371185	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000371185	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371184	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371184	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
In-frame	ENST00000371184	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000371184	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-3CDS	ENST00000357977	ENST00000371947		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-3CDS	ENST00000357977	ENST00000437752		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-3CDS	ENST00000357977	ENST00000331772		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
intron-5UTR	ENST00000357977	ENST00000466945		TCGA	RV	GBM	TCGA-19-0957-02A	NFIA	chr1	61554352	+	RNLS	chr10	90122482	-
Frame-shit	ENST00000545664	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
5CDS-intron	ENST00000545664	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
Frame-shit	ENST00000269740	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
5CDS-intron	ENST00000269740	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-3CDS	ENST00000455372	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-intron	ENST00000455372	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-3CDS	ENST00000590875	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-intron	ENST00000590875	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-02A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
Frame-shit	ENST00000307877	ENST00000372853		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000307877	ENST00000452446		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000307877	ENST00000372850		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000307877	ENST00000372847		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000307877	ENST00000483206		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000539137	ENST00000372853		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000539137	ENST00000452446		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000539137	ENST00000372850		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000539137	ENST00000372847		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000539137	ENST00000483206		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000355113	ENST00000372853		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000355113	ENST00000452446		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
In-frame	ENST00000355113	ENST00000372850		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000355113	ENST00000372847		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000355113	ENST00000483206		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000602720	ENST00000372853		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000602720	ENST00000452446		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000602720	ENST00000372850		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
Frame-shit	ENST00000602720	ENST00000372847		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000602720	ENST00000483206		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000542536	ENST00000372853		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000542536	ENST00000452446		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000542536	ENST00000372850		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000542536	ENST00000372847		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5UTR-3UTR	ENST00000542536	ENST00000483206		TCGA	RV	GBM	TCGA-06-0219-01A	SRP68	chr17	74039910	-	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000280333	ENST00000470165		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
5CDS-5UTR	ENST00000280333	ENST00000416979		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
5CDS-intron	ENST00000280333	ENST00000370151		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
5CDS-intron	ENST00000280333	ENST00000370147		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
5CDS-intron	ENST00000280333	ENST00000370148		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
intron-3UTR	ENST00000484400	ENST00000470165		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
intron-5UTR	ENST00000484400	ENST00000416979		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
intron-intron	ENST00000484400	ENST00000370151		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
intron-intron	ENST00000484400	ENST00000370147		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
intron-intron	ENST00000484400	ENST00000370148		TCGA	RV	GBM	TCGA-02-2483-01A	DOCK1	chr10	128798571	+	DPCD	chr10	103347033	+
In-frame	ENST00000528416	ENST00000265465		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
In-frame	ENST00000528416	ENST00000541089		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
5CDS-intron	ENST00000528416	ENST00000534785		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000415073	ENST00000265465		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000415073	ENST00000541089		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
intron-intron	ENST00000415073	ENST00000534785		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
In-frame	ENST00000252268	ENST00000265465		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
In-frame	ENST00000252268	ENST00000541089		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
5CDS-intron	ENST00000252268	ENST00000534785		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000532264	ENST00000265465		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000532264	ENST00000541089		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
intron-intron	ENST00000532264	ENST00000534785		TCGA	RV	GBM	TCGA-06-0141-01A	DPF2	chr11	65113830	+	POLA2	chr11	65049950	+
In-frame	ENST00000297153	ENST00000230419		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000297153	ENST00000349241		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000297153	ENST00000345201		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000297153	ENST00000352931		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000297153	ENST00000481273		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5CDS-intron	ENST00000297153	ENST00000476760		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5CDS-intron	ENST00000297153	ENST00000471863		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000434837	ENST00000230419		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000434837	ENST00000349241		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000434837	ENST00000345201		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000434837	ENST00000352931		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000434837	ENST00000481273		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5CDS-intron	ENST00000434837	ENST00000476760		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5CDS-intron	ENST00000434837	ENST00000471863		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000505425	ENST00000230419		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000505425	ENST00000349241		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000505425	ENST00000345201		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000505425	ENST00000352931		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
In-frame	ENST00000505425	ENST00000481273		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5CDS-intron	ENST00000505425	ENST00000476760		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5CDS-intron	ENST00000505425	ENST00000471863		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-3CDS	ENST00000510077	ENST00000230419		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-3CDS	ENST00000510077	ENST00000349241		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-3CDS	ENST00000510077	ENST00000345201		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-3CDS	ENST00000510077	ENST00000352931		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-3CDS	ENST00000510077	ENST00000481273		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-intron	ENST00000510077	ENST00000476760		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
intron-intron	ENST00000510077	ENST00000471863		TCGA	RV	GBM	TCGA-06-0129-01A	MDGA1	chr6	37623476	-	PTK7	chr6	43126555	+
5UTR-5UTR	ENST00000338586	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338586	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338586	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338586	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338515	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338515	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338515	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000338515	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367171	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367171	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367171	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367171	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367169	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367169	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367169	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367169	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000539706	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000539706	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000539706	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000539706	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000339876	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000339876	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000339876	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000339876	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367170	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367170	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367170	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367170	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000360049	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000360049	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000360049	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000360049	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367172	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367172	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367172	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000367172	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000403080	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000403080	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000403080	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000403080	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404076	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404076	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404076	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404076	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000401399	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000401399	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000401399	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000401399	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404907	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404907	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404907	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000404907	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000513543	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000513543	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000513543	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000513543	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000495396	ENST00000367176		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000495396	ENST00000367177		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000495396	ENST00000496057		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000495396	ENST00000367175		TCGA	RV	GBM	TCGA-27-1834-01A	NFASC	chr1	204797910	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000392474	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000392474	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000392474	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000392474	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000538733	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000538733	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000538733	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000538733	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000337174	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000337174	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000337174	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000337174	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000347034	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000347034	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000347034	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000347034	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000324774	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000324774	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000324774	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000324774	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000545538	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000545538	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000545538	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000545538	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000412367	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000412367	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000412367	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000412367	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000404169	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000404169	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000404169	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000404169	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000402834	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000402834	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000402834	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000402834	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000446440	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000446440	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000446440	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000446440	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000392473	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000392473	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000392473	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000392473	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
intron-5UTR	ENST00000535524	ENST00000333003		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
intron-intron	ENST00000535524	ENST00000545833		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
intron-5UTR	ENST00000535524	ENST00000393101		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
intron-5UTR	ENST00000535524	ENST00000330677		TCGA	RV	GBM	TCGA-06-0129-01A	CAMKK2	chr12	121682943	-	NR2C1	chr12	95461167	-
In-frame	ENST00000423729	ENST00000304733		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
In-frame	ENST00000423729	ENST00000002501		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
Frame-shit	ENST00000423729	ENST00000392973		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
In-frame	ENST00000423729	ENST00000568838		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
In-frame	ENST00000331662	ENST00000304733		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
In-frame	ENST00000331662	ENST00000002501		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
Frame-shit	ENST00000331662	ENST00000392973		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
In-frame	ENST00000331662	ENST00000568838		TCGA	RV	GBM	TCGA-06-0157-01A	NAT8L	chr4	2062889	+	DBNDD1	chr16	90075838	-
Frame-shit	ENST00000398556	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000398556	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000398547	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000398547	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
In-frame	ENST00000373658	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000373658	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
In-frame	ENST00000373655	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000373655	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000398542	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000398542	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
intron-3CDS	ENST00000465256	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
intron-3UTR	ENST00000465256	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
In-frame	ENST00000257070	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000257070	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000527361	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000527361	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
intron-3CDS	ENST00000440175	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
intron-3UTR	ENST00000440175	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
In-frame	ENST00000398538	ENST00000331351		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000398538	ENST00000475436		TCGA	RV	GBM	TCGA-16-1045-01B	BAI2	chr1	32221600	-	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000418530	ENST00000335012		TCGA	RV	GBM	TCGA-06-0171-02A	KIDINS220	chr2	8952525	-	C3orf70	chr3	184801351	-
In-frame	ENST00000256707	ENST00000335012		TCGA	RV	GBM	TCGA-06-0171-02A	KIDINS220	chr2	8952525	-	C3orf70	chr3	184801351	-
In-frame	ENST00000427284	ENST00000335012		TCGA	RV	GBM	TCGA-06-0171-02A	KIDINS220	chr2	8952525	-	C3orf70	chr3	184801351	-
Frame-shit	ENST00000473731	ENST00000335012		TCGA	RV	GBM	TCGA-06-0171-02A	KIDINS220	chr2	8952525	-	C3orf70	chr3	184801351	-
In-frame	ENST00000319688	ENST00000335012		TCGA	RV	GBM	TCGA-06-0171-02A	KIDINS220	chr2	8952525	-	C3orf70	chr3	184801351	-
intron-3CDS	ENST00000436566	ENST00000335012		TCGA	RV	GBM	TCGA-06-0171-02A	KIDINS220	chr2	8952525	-	C3orf70	chr3	184801351	-
Frame-shit	ENST00000536101	ENST00000263228		TCGA	RV	GBM	TCGA-19-2625-01A	MYO18B	chr22	26228964	+	UBE2R2	chr9	33911962	+
Frame-shit	ENST00000335473	ENST00000263228		TCGA	RV	GBM	TCGA-19-2625-01A	MYO18B	chr22	26228964	+	UBE2R2	chr9	33911962	+
Frame-shit	ENST00000407587	ENST00000263228		TCGA	RV	GBM	TCGA-19-2625-01A	MYO18B	chr22	26228964	+	UBE2R2	chr9	33911962	+
intron-3CDS	ENST00000536204	ENST00000263228		TCGA	RV	GBM	TCGA-19-2625-01A	MYO18B	chr22	26228964	+	UBE2R2	chr9	33911962	+
5CDS-intron	ENST00000301180	ENST00000548589		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000301180	ENST00000552699		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000301180	ENST00000267115		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000301180	ENST00000549385		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000301180	ENST00000423828		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000301180	ENST00000395006		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000301180	ENST00000547798		TCGA	RV	GBM	TCGA-06-1804-01A	DIP2B	chr12	50899023	+	TMBIM6	chr12	50146247	+
Frame-shit	ENST00000513376	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
In-frame	ENST00000205214	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
Frame-shit	ENST00000434343	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
In-frame	ENST00000451613	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
Frame-shit	ENST00000602986	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
In-frame	ENST00000502617	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
intron-3CDS	ENST00000510762	ENST00000343457		TCGA	RV	GBM	TCGA-06-2559-01A	AASDH	chr4	57217508	-	LRRC66	chr4	52869558	-
In-frame	ENST00000436008	ENST00000296861		TCGA	RV	GBM	TCGA-06-0129-01A	SLC22A23	chr6	3410422	-	TNFRSF21	chr6	47221257	-
In-frame	ENST00000406686	ENST00000296861		TCGA	RV	GBM	TCGA-06-0129-01A	SLC22A23	chr6	3410422	-	TNFRSF21	chr6	47221257	-
Frame-shit	ENST00000380302	ENST00000296861		TCGA	RV	GBM	TCGA-06-0129-01A	SLC22A23	chr6	3410422	-	TNFRSF21	chr6	47221257	-
Frame-shit	ENST00000490273	ENST00000296861		TCGA	RV	GBM	TCGA-06-0129-01A	SLC22A23	chr6	3410422	-	TNFRSF21	chr6	47221257	-
In-frame	ENST00000380298	ENST00000296861		TCGA	RV	GBM	TCGA-06-0129-01A	SLC22A23	chr6	3410422	-	TNFRSF21	chr6	47221257	-
intron-3CDS	ENST00000433689	ENST00000296861		TCGA	RV	GBM	TCGA-06-0129-01A	SLC22A23	chr6	3410422	-	TNFRSF21	chr6	47221257	-
In-frame	ENST00000373036	ENST00000373019		TCGA	RV	GBM	TCGA-06-0141-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38453508	-
5CDS-intron	ENST00000373036	ENST00000448721		TCGA	RV	GBM	TCGA-06-0141-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38453508	-
5CDS-5UTR	ENST00000373036	ENST00000489537		TCGA	RV	GBM	TCGA-06-0141-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38453508	-
intron-3CDS	ENST00000468190	ENST00000373019		TCGA	RV	GBM	TCGA-06-0141-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38453508	-
intron-intron	ENST00000468190	ENST00000448721		TCGA	RV	GBM	TCGA-06-0141-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38453508	-
intron-5UTR	ENST00000468190	ENST00000489537		TCGA	RV	GBM	TCGA-06-0141-01A	MTF1	chr1	38322923	-	SF3A3	chr1	38453508	-
5CDS-intron	ENST00000357067	ENST00000324557		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000357067	ENST00000402825		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000357067	ENST00000359140		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000357067	ENST00000404464		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000357067	ENST00000357474		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000438320	ENST00000324557		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000438320	ENST00000402825		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000438320	ENST00000359140		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000438320	ENST00000404464		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000438320	ENST00000357474		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000510370	ENST00000324557		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000510370	ENST00000402825		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000510370	ENST00000359140		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000510370	ENST00000404464		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5CDS-intron	ENST00000510370	ENST00000357474		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5UTR-intron	ENST00000513383	ENST00000324557		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5UTR-intron	ENST00000513383	ENST00000402825		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5UTR-intron	ENST00000513383	ENST00000359140		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5UTR-intron	ENST00000513383	ENST00000404464		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
5UTR-intron	ENST00000513383	ENST00000357474		TCGA	RV	GBM	TCGA-06-0644-01A	DCTD	chr4	183836076	-	ECE2	chr3	184001573	+
In-frame	ENST00000338086	ENST00000403006		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
Frame-shit	ENST00000338086	ENST00000381090		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000338086	ENST00000237822		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000338086	ENST00000435420		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000338086	ENST00000440866		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000338086	ENST00000541941		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000338086	ENST00000419825		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
In-frame	ENST00000319801	ENST00000403006		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
Frame-shit	ENST00000319801	ENST00000381090		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000319801	ENST00000237822		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000319801	ENST00000435420		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000319801	ENST00000440866		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000319801	ENST00000541941		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000319801	ENST00000419825		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
In-frame	ENST00000361078	ENST00000403006		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
Frame-shit	ENST00000361078	ENST00000381090		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000361078	ENST00000237822		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000361078	ENST00000435420		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000361078	ENST00000440866		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000361078	ENST00000541941		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000361078	ENST00000419825		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
Frame-shit	ENST00000536417	ENST00000403006		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
In-frame	ENST00000536417	ENST00000381090		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000536417	ENST00000237822		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000536417	ENST00000435420		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000536417	ENST00000440866		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000536417	ENST00000541941		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000536417	ENST00000419825		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
Frame-shit	ENST00000403432	ENST00000403006		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
In-frame	ENST00000403432	ENST00000381090		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000403432	ENST00000237822		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000403432	ENST00000435420		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000403432	ENST00000440866		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000403432	ENST00000541941		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5CDS-intron	ENST00000403432	ENST00000419825		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-3CDS	ENST00000420234	ENST00000403006		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-3CDS	ENST00000420234	ENST00000381090		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-intron	ENST00000420234	ENST00000237822		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-intron	ENST00000420234	ENST00000435420		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-intron	ENST00000420234	ENST00000440866		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-intron	ENST00000420234	ENST00000541941		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
intron-intron	ENST00000420234	ENST00000419825		TCGA	RV	GBM	TCGA-14-0789-01A	PUM2	chr2	20490413	-	C2orf43	chr2	20884683	-
5UTR-3CDS	ENST00000250559	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000250559	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000250559	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000393436	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000393436	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000393436	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000341355	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000341355	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000341355	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000537460	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000537460	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000537460	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
intron-3CDS	ENST00000463493	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
intron-3CDS	ENST00000463493	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
intron-5UTR	ENST00000463493	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000450214	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000450214	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000450214	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000543393	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000543393	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000543393	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000378985	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000378985	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000378985	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000540209	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000540209	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000540209	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000539091	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000539091	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000539091	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000542145	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000542145	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000542145	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000543697	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000543697	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000543697	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000541216	ENST00000398073		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000541216	ENST00000548823		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000541216	ENST00000547701		TCGA	RV	GBM	TCGA-26-5135-01A	RAP1B	chr12	69004823	+	CTDSP2	chr12	58223379	-
In-frame	ENST00000326019	ENST00000515877		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000326019	ENST00000503738		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000326019	ENST00000458167		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000326019	ENST00000424214		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000326019	ENST00000407583		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000326019	ENST00000264718		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000326019	ENST00000610189		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000326019	ENST00000461249		TCGA	RV	GBM	TCGA-06-0743-01A	SLC4A1AP	chr2	27892254	+	GPN1	chr2	27870703	+
In-frame	ENST00000301180	ENST00000372978		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
In-frame	ENST00000301180	ENST00000494547		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
In-frame	ENST00000301180	ENST00000456846		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
In-frame	ENST00000301180	ENST00000372982		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
In-frame	ENST00000301180	ENST00000472818		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
In-frame	ENST00000301180	ENST00000372977		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
5CDS-3UTR	ENST00000301180	ENST00000482926		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000301180	ENST00000465926		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000301180	ENST00000482432		TCGA	RV	GBM	TCGA-06-0129-01A	DIP2B	chr12	51128913	+	TAF8	chr6	42019095	+
Frame-shit	ENST00000543470	ENST00000389794		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
Frame-shit	ENST00000543470	ENST00000389793		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
5CDS-intron	ENST00000543470	ENST00000536965		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
5CDS-5UTR	ENST00000543470	ENST00000473037		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
Frame-shit	ENST00000366960	ENST00000389794		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
Frame-shit	ENST00000366960	ENST00000389793		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
5CDS-intron	ENST00000366960	ENST00000536965		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
5CDS-5UTR	ENST00000366960	ENST00000473037		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
Frame-shit	ENST00000366959	ENST00000389794		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
Frame-shit	ENST00000366959	ENST00000389793		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
5CDS-intron	ENST00000366959	ENST00000536965		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
5CDS-5UTR	ENST00000366959	ENST00000473037		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
intron-3CDS	ENST00000543354	ENST00000389794		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
intron-3CDS	ENST00000543354	ENST00000389793		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
intron-intron	ENST00000543354	ENST00000536965		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
intron-5UTR	ENST00000543354	ENST00000473037		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
3UTR-3CDS	ENST00000490299	ENST00000389794		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
3UTR-3CDS	ENST00000490299	ENST00000389793		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
3UTR-intron	ENST00000490299	ENST00000536965		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
3UTR-5UTR	ENST00000490299	ENST00000473037		TCGA	RV	GBM	TCGA-27-2523-01A	RPS6KC1	chr1	213303232	+	LYST	chr1	235840919	-
In-frame	ENST00000324856	ENST00000371833		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
5CDS-intron	ENST00000324856	ENST00000476096		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
In-frame	ENST00000457599	ENST00000371833		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
5CDS-intron	ENST00000457599	ENST00000476096		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
intron-3CDS	ENST00000374152	ENST00000371833		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
intron-intron	ENST00000374152	ENST00000476096		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
intron-3CDS	ENST00000540690	ENST00000371833		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
intron-intron	ENST00000540690	ENST00000476096		TCGA	RV	GBM	TCGA-28-2514-01A	ARID1A	chr1	27024031	+	BEND5	chr1	49202124	-
5CDS-intron	ENST00000324856	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000324856	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000324856	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000324856	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-02A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
In-frame	ENST00000308197	ENST00000229268		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
In-frame	ENST00000308197	ENST00000389231		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
5CDS-intron	ENST00000308197	ENST00000541969		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
In-frame	ENST00000433805	ENST00000229268		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
In-frame	ENST00000433805	ENST00000389231		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
5CDS-intron	ENST00000433805	ENST00000541969		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
In-frame	ENST00000546544	ENST00000229268		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
In-frame	ENST00000546544	ENST00000389231		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
5CDS-intron	ENST00000546544	ENST00000541969		TCGA	RV	GBM	TCGA-06-0129-01A	COQ10A	chr12	56663345	+	USP5	chr12	6964565	+
Frame-shit	ENST00000338564	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000338564	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000338564	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000338564	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000338564	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000561208	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000561208	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000561208	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000561208	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000561208	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397624	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397624	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397624	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397624	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397624	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000382766	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000382766	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000382766	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000382766	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000382766	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000444725	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000444725	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000444725	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000444725	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000444725	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000340545	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000340545	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000340545	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000340545	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000340545	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000559085	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000559085	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000559085	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000559085	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000559085	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000219869	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000219869	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000219869	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000219869	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000219869	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000557796	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000557796	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000557796	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000557796	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000557796	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397620	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397620	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397620	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397620	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000397620	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000424352	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000424352	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000424352	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000424352	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
Frame-shit	ENST00000424352	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000559561	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000559561	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000559561	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000559561	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
In-frame	ENST00000559561	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
intron-3CDS	ENST00000559408	ENST00000396604		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
intron-3CDS	ENST00000559408	ENST00000396602		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
intron-3CDS	ENST00000559408	ENST00000530463		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
intron-3CDS	ENST00000559408	ENST00000396597		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
intron-3CDS	ENST00000559408	ENST00000299606		TCGA	RV	GBM	TCGA-06-0174-01A	MEIS2	chr15	37329015	-	ZNF143	chr11	9516193	+
5UTR-3CDS	ENST00000325875	ENST00000259400		TCGA	RV	GBM	TCGA-06-0744-01A	RMI1	chr9	86595806	+	STX17	chr9	102691060	+
5UTR-3CDS	ENST00000325875	ENST00000525640		TCGA	RV	GBM	TCGA-06-0744-01A	RMI1	chr9	86595806	+	STX17	chr9	102691060	+
5UTR-3CDS	ENST00000325875	ENST00000534052		TCGA	RV	GBM	TCGA-06-0744-01A	RMI1	chr9	86595806	+	STX17	chr9	102691060	+
5UTR-intron	ENST00000325875	ENST00000525847		TCGA	RV	GBM	TCGA-06-0744-01A	RMI1	chr9	86595806	+	STX17	chr9	102691060	+
5CDS-intron	ENST00000253048	ENST00000426895		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000547186		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000397241		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000427853		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000383827		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000455274		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000430793		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-intron	ENST00000253048	ENST00000466245		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000426895		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000547186		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000397241		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000427853		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000383827		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000455274		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000430793		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
intron-intron	ENST00000594019	ENST00000466245		TCGA	RV	GBM	TCGA-14-0817-01A	ZC3H4	chr19	47589641	-	TTLL3	chr3	9896243	+
5CDS-5UTR	ENST00000025301	ENST00000498078		TCGA	RV	GBM	TCGA-06-2558-01A	AKAP11	chr13	42882745	+	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000025301	ENST00000323563		TCGA	RV	GBM	TCGA-06-2558-01A	AKAP11	chr13	42882745	+	MRPS31	chr13	41303737	-
5CDS-intron	ENST00000375799	ENST00000428417		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375799	ENST00000376014		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000375799	ENST00000400796		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375799	ENST00000434578		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375799	ENST00000376008		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000375793	ENST00000428417		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375793	ENST00000376014		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000375793	ENST00000400796		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375793	ENST00000434578		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375793	ENST00000376008		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
intron-intron	ENST00000477849	ENST00000428417		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
intron-5UTR	ENST00000477849	ENST00000376014		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
intron-intron	ENST00000477849	ENST00000400796		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
intron-5UTR	ENST00000477849	ENST00000434578		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
intron-5UTR	ENST00000477849	ENST00000376008		TCGA	RV	GBM	TCGA-12-3650-01A	PLEKHM2	chr1	16046415	+	TMEM51	chr1	15536986	+
Frame-shit	ENST00000545664	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
5CDS-intron	ENST00000545664	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
Frame-shit	ENST00000269740	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
5CDS-intron	ENST00000269740	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-3CDS	ENST00000455372	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-intron	ENST00000455372	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-3CDS	ENST00000590875	ENST00000221566		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
intron-intron	ENST00000590875	ENST00000586711		TCGA	RV	GBM	TCGA-06-0125-01A	SLC39A3	chr19	2737046	-	SGTA	chr19	2765283	-
5CDS-3UTR	ENST00000398073	ENST00000553221		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000398073	ENST00000257910		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000398073	ENST00000547992		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000398073	ENST00000547472		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000548823	ENST00000553221		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000548823	ENST00000257910		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000548823	ENST00000547992		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000548823	ENST00000547472		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000547701	ENST00000553221		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000547701	ENST00000257910		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
intron-intron	ENST00000547701	ENST00000547992		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
intron-intron	ENST00000547701	ENST00000547472		TCGA	RV	GBM	TCGA-16-0846-01A	CTDSP2	chr12	58240155	-	TSPAN31	chr12	58140372	+
Frame-shit	ENST00000553066	ENST00000389397		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000553066	ENST00000389398		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000553066	ENST00000563755		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000550443	ENST00000389397		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000550443	ENST00000389398		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000550443	ENST00000563755		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000207437	ENST00000389397		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000207437	ENST00000389398		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000207437	ENST00000563755		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000552568	ENST00000389397		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000552568	ENST00000389398		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
Frame-shit	ENST00000552568	ENST00000563755		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
3UTR-3CDS	ENST00000550152	ENST00000389397		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
3UTR-3CDS	ENST00000550152	ENST00000389398		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
3UTR-3CDS	ENST00000550152	ENST00000563755		TCGA	RV	GBM	TCGA-06-0156-01A	MYL6B	chr12	56547876	+	VWA3A	chr16	22161108	+
5CDS-5UTR	ENST00000356388	ENST00000206595		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
5CDS-intron	ENST00000356388	ENST00000544007		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
5CDS-intron	ENST00000356388	ENST00000438909		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
5CDS-intron	ENST00000356388	ENST00000553504		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-5UTR	ENST00000443619	ENST00000206595		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-intron	ENST00000443619	ENST00000544007		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-intron	ENST00000443619	ENST00000438909		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-intron	ENST00000443619	ENST00000553504		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-5UTR	ENST00000474228	ENST00000206595		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-intron	ENST00000474228	ENST00000544007		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-intron	ENST00000474228	ENST00000438909		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
intron-intron	ENST00000474228	ENST00000553504		TCGA	RV	GBM	TCGA-28-2514-01A	SPRED2	chr2	65659096	-	G2E3	chr14	31050282	+
5CDS-5UTR	ENST00000446828	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000446828	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000446828	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000446828	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-3UTR	ENST00000446828	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5UTR-5UTR	ENST00000424227	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5UTR-5UTR	ENST00000424227	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5UTR-5UTR	ENST00000424227	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5UTR-5UTR	ENST00000424227	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5UTR-3UTR	ENST00000424227	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000443863	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000443863	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000443863	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000443863	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-3UTR	ENST00000443863	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000535426	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000535426	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000535426	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000535426	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-3UTR	ENST00000535426	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000265026	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000265026	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000265026	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-5UTR	ENST00000265026	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
intron-3UTR	ENST00000265026	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000448876	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000448876	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000448876	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000448876	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-3UTR	ENST00000448876	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000454237	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000454237	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000454237	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000454237	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-3UTR	ENST00000454237	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000438798	ENST00000598095		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000438798	ENST00000426897		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000438798	ENST00000323906		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-5UTR	ENST00000438798	ENST00000535669		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
5CDS-3UTR	ENST00000438798	ENST00000596426		TCGA	RV	GBM	TCGA-06-5859-01A	MAP3K13	chr3	185003431	+	CD37	chr19	49840166	+
Frame-shit	ENST00000360565	ENST00000006275		TCGA	RV	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668452	-
5CDS-intron	ENST00000360565	ENST00000588062		TCGA	RV	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668452	-
5CDS-intron	ENST00000360565	ENST00000585934		TCGA	RV	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668452	-
5CDS-intron	ENST00000360565	ENST00000592647		TCGA	RV	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668452	-
In-frame	ENST00000455089	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
In-frame	ENST00000342916	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
In-frame	ENST00000344576	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
In-frame	ENST00000420316	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
In-frame	ENST00000275493	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
In-frame	ENST00000442591	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
3UTR-3CDS	ENST00000463948	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
intron-3CDS	ENST00000454757	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	EGFR	chr7	55087058	+	ERP44	chr9	102784508	-
5UTR-3CDS	ENST00000299293	ENST00000455537		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
5UTR-intron	ENST00000299293	ENST00000286452		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
5UTR-3CDS	ENST00000549921	ENST00000455537		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
5UTR-intron	ENST00000549921	ENST00000286452		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
5UTR-3CDS	ENST00000550389	ENST00000455537		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
5UTR-intron	ENST00000550389	ENST00000286452		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000397997	ENST00000455537		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
intron-intron	ENST00000397997	ENST00000286452		TCGA	RV	GBM	TCGA-06-0129-01A	FRS2	chr12	69864310	+	KIF5A	chr12	57957222	+
Frame-shit	ENST00000377069	ENST00000425217		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
Frame-shit	ENST00000377069	ENST00000339824		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000377069	ENST00000302438		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000377069	ENST00000545002		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-3CDS	ENST00000542973	ENST00000425217		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-3CDS	ENST00000542973	ENST00000339824		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-intron	ENST00000542973	ENST00000302438		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-intron	ENST00000542973	ENST00000545002		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
Frame-shit	ENST00000377071	ENST00000425217		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
Frame-shit	ENST00000377071	ENST00000339824		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000377071	ENST00000302438		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000377071	ENST00000545002		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
In-frame	ENST00000536437	ENST00000425217		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
In-frame	ENST00000536437	ENST00000339824		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000536437	ENST00000302438		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000536437	ENST00000545002		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
Frame-shit	ENST00000538046	ENST00000425217		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
Frame-shit	ENST00000538046	ENST00000339824		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000538046	ENST00000302438		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
5CDS-intron	ENST00000538046	ENST00000545002		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-3CDS	ENST00000543852	ENST00000425217		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-3CDS	ENST00000543852	ENST00000339824		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-intron	ENST00000543852	ENST00000302438		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
intron-intron	ENST00000543852	ENST00000545002		TCGA	RV	GBM	TCGA-06-5856-01A	KDM2B	chr12	121986782	-	KSR2	chr12	118298236	-
Frame-shit	ENST00000296543	ENST00000374431		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
In-frame	ENST00000296543	ENST00000541779		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000296543	ENST00000374430		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000296543	ENST00000358883		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
In-frame	ENST00000296543	ENST00000538760		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000398947	ENST00000374431		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
In-frame	ENST00000398947	ENST00000541779		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000398947	ENST00000374430		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000398947	ENST00000358883		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
In-frame	ENST00000398947	ENST00000538760		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000480277	ENST00000374431		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000480277	ENST00000541779		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000480277	ENST00000374430		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000480277	ENST00000358883		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000480277	ENST00000538760		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000515576	ENST00000374431		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000515576	ENST00000541779		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000515576	ENST00000374430		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000515576	ENST00000358883		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000515576	ENST00000538760		TCGA	RV	GBM	TCGA-06-0129-01A	NAA15	chr4	140222985	+	LPAR1	chr9	113638002	-
5CDS-3UTR	ENST00000346365	ENST00000396613		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000346365	ENST00000377959		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000346365	ENST00000377960		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000346365	ENST00000474050		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379158	ENST00000396613		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379158	ENST00000377959		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379158	ENST00000377960		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379158	ENST00000474050		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379155	ENST00000396613		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379155	ENST00000377959		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379155	ENST00000377960		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
5CDS-3UTR	ENST00000379155	ENST00000474050		TCGA	RV	GBM	TCGA-27-2523-01A	NUDT2	chr9	34339164	+	GLIPR2	chr9	36162359	+
Frame-shit	ENST00000368842	ENST00000368693		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000368842	ENST00000368695		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000368842	ENST00000449042		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
5CDS-5UTR	ENST00000368842	ENST00000368689		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
5CDS-intron	ENST00000368842	ENST00000477963		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-3CDS	ENST00000368839	ENST00000368693		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000368839	ENST00000368695		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000368839	ENST00000449042		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000368839	ENST00000368689		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-intron	ENST00000368839	ENST00000477963		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-3CDS	ENST00000392757	ENST00000368693		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000392757	ENST00000368695		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000392757	ENST00000449042		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000392757	ENST00000368689		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-intron	ENST00000392757	ENST00000477963		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-3CDS	ENST00000482963	ENST00000368693		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000482963	ENST00000368695		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000482963	ENST00000449042		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-5UTR	ENST00000482963	ENST00000368689		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
intron-intron	ENST00000482963	ENST00000477963		TCGA	RV	GBM	TCGA-02-2483-01A	LHPP	chr10	126205840	+	FANK1	chr10	127668730	+
Frame-shit	ENST00000398073	ENST00000462284		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000356290		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000540827		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000258149		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000428863		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000393412		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000258148		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000544561		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000393410		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000393413		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000517852		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000545204		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000350057		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000360430		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000398073	ENST00000299252		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-intron	ENST00000398073	ENST00000348801		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-intron	ENST00000398073	ENST00000478070		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-intron	ENST00000398073	ENST00000544125		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
Frame-shit	ENST00000548823	ENST00000462284		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000356290		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000540827		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000258149		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000428863		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000393412		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000258148		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000544561		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000393410		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000393413		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000517852		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000545204		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000350057		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000360430		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000548823	ENST00000299252		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-intron	ENST00000548823	ENST00000348801		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-intron	ENST00000548823	ENST00000478070		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-intron	ENST00000548823	ENST00000544125		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-3CDS	ENST00000547701	ENST00000462284		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000356290		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000540827		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000258149		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000428863		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000393412		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000258148		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000544561		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000393410		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000393413		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000517852		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000545204		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000350057		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000360430		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-5UTR	ENST00000547701	ENST00000299252		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-intron	ENST00000547701	ENST00000348801		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-intron	ENST00000547701	ENST00000478070		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
intron-intron	ENST00000547701	ENST00000544125		TCGA	RV	GBM	TCGA-06-5856-01A	CTDSP2	chr12	58240155	-	MDM2	chr12	69202988	+
5CDS-5UTR	ENST00000441750	ENST00000409533		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-5UTR	ENST00000441750	ENST00000409230		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-5UTR	ENST00000441750	ENST00000331342		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-intron	ENST00000441750	ENST00000481155		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-5UTR	ENST00000281513	ENST00000409533		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-5UTR	ENST00000281513	ENST00000409230		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-5UTR	ENST00000281513	ENST00000331342		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5CDS-intron	ENST00000281513	ENST00000481155		TCGA	RV	GBM	TCGA-06-0156-01A	NBAS	chr2	15691617	-	C2orf82	chr2	233734995	+
5UTR-3CDS	ENST00000301011	ENST00000397901		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000301011	ENST00000253475		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000301011	ENST00000535997		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000301011	ENST00000550102		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000301011	ENST00000547614		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000397901		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000253475		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000535997		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000550102		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000452588	ENST00000547614		TCGA	RV	GBM	TCGA-06-0210-01A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000394331	ENST00000408946		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-3CDS	ENST00000394331	ENST00000398213		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000394331	ENST00000302533		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000394331	ENST00000557259		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000394331	ENST00000547925		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-intron	ENST00000394331	ENST00000454792		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-3CDS	ENST00000243108	ENST00000408946		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-3CDS	ENST00000243108	ENST00000398213		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000243108	ENST00000302533		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000243108	ENST00000557259		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-5UTR	ENST00000243108	ENST00000547925		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
intron-intron	ENST00000243108	ENST00000454792		TCGA	RV	GBM	TCGA-19-2624-01A	HOXC6	chr12	54388800	+	WIBG	chr12	56297264	-
5CDS-intron	ENST00000324856	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000324856	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000324856	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000324856	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000457599	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
5CDS-intron	ENST00000374152	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000557878		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000559275		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000324103		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
intron-intron	ENST00000540690	ENST00000382687		TCGA	RV	GBM	TCGA-06-0125-01A	ARID1A	chr1	27094490	+	RNF31	chr14	24624366	+
In-frame	ENST00000344771	ENST00000250784		TCGA	RV	GBM	TCGA-06-0132-01A	SRCAP	chr16	30727800	+	RPS4Y1	chrY	2722641	+
5CDS-3UTR	ENST00000344771	ENST00000477725		TCGA	RV	GBM	TCGA-06-0132-01A	SRCAP	chr16	30727800	+	RPS4Y1	chrY	2722641	+
In-frame	ENST00000395059	ENST00000250784		TCGA	RV	GBM	TCGA-06-0132-01A	SRCAP	chr16	30727800	+	RPS4Y1	chrY	2722641	+
5CDS-3UTR	ENST00000395059	ENST00000477725		TCGA	RV	GBM	TCGA-06-0132-01A	SRCAP	chr16	30727800	+	RPS4Y1	chrY	2722641	+
In-frame	ENST00000262518	ENST00000250784		TCGA	RV	GBM	TCGA-06-0132-01A	SRCAP	chr16	30727800	+	RPS4Y1	chrY	2722641	+
5CDS-3UTR	ENST00000262518	ENST00000477725		TCGA	RV	GBM	TCGA-06-0132-01A	SRCAP	chr16	30727800	+	RPS4Y1	chrY	2722641	+
In-frame	ENST00000297273	ENST00000340652		TCGA	RV	GBM	TCGA-06-2557-01A	CASD1	chr7	94147635	+	VWC2	chr7	49951630	+
5UTR-3CDS	ENST00000301011	ENST00000397901		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000301011	ENST00000253475		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000301011	ENST00000535997		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000301011	ENST00000550102		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000301011	ENST00000547614		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000397901		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000253475		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000535997		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000452588	ENST00000550102		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000452588	ENST00000547614		TCGA	RV	GBM	TCGA-06-0210-02A	ZC3H18	chr16	88636974	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000455089	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000455089	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
In-frame	ENST00000455089	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000455089	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000342916	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000342916	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000342916	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000342916	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000344576	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000344576	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000344576	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000344576	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000420316	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000420316	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000420316	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000420316	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000275493	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000275493	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
In-frame	ENST00000275493	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000275493	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000442591	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000442591	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000442591	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000442591	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000463948	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000463948	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000463948	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
intron-3CDS	ENST00000463948	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000454757	ENST00000418919		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000454757	ENST00000258145		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
In-frame	ENST00000454757	ENST00000543646		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000454757	ENST00000542058		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55240817	+	GNS	chr12	65110599	-
Frame-shit	ENST00000396299	ENST00000330883		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000396299	ENST00000392968		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000396299	ENST00000262186		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
5CDS-intron	ENST00000396299	ENST00000430723		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000357727	ENST00000330883		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000357727	ENST00000392968		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000357727	ENST00000262186		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
5CDS-intron	ENST00000357727	ENST00000430723		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000396300	ENST00000330883		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000396300	ENST00000392968		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000396300	ENST00000262186		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
5CDS-intron	ENST00000396300	ENST00000430723		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000409603	ENST00000330883		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000409603	ENST00000392968		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
Frame-shit	ENST00000409603	ENST00000262186		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
5CDS-intron	ENST00000409603	ENST00000430723		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-3CDS	ENST00000396298	ENST00000330883		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-3CDS	ENST00000396298	ENST00000392968		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-3CDS	ENST00000396298	ENST00000262186		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-intron	ENST00000396298	ENST00000430723		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-3CDS	ENST00000482692	ENST00000330883		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-3CDS	ENST00000482692	ENST00000392968		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-3CDS	ENST00000482692	ENST00000262186		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
intron-intron	ENST00000482692	ENST00000430723		TCGA	RV	GBM	TCGA-27-2528-01A	CREB5	chr7	28610155	+	KCNH2	chr7	150646137	-
5UTR-3UTR	ENST00000338586	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000338586	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000338515	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000338515	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367171	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367171	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367169	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367169	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000539706	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000539706	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000339876	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000339876	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367170	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367170	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000360049	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000360049	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367172	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367172	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000403080	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000403080	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000404076	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000404076	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000401399	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000401399	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000404907	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000404907	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000513543	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000513543	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000495396	ENST00000367203		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000495396	ENST00000367204		TCGA	RV	GBM	TCGA-06-0157-01A	NFASC	chr1	204797910	+	SOX13	chr1	204082043	+
Frame-shit	ENST00000398073	ENST00000381441		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
Frame-shit	ENST00000398073	ENST00000334635		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5CDS-intron	ENST00000398073	ENST00000513800		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5CDS-intron	ENST00000398073	ENST00000381437		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5CDS-intron	ENST00000398073	ENST00000451288		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
Frame-shit	ENST00000548823	ENST00000381441		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
Frame-shit	ENST00000548823	ENST00000334635		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5CDS-intron	ENST00000548823	ENST00000513800		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5CDS-intron	ENST00000548823	ENST00000381437		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5CDS-intron	ENST00000548823	ENST00000451288		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
intron-3CDS	ENST00000547701	ENST00000381441		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
intron-3CDS	ENST00000547701	ENST00000334635		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
intron-intron	ENST00000547701	ENST00000513800		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
intron-intron	ENST00000547701	ENST00000381437		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
intron-intron	ENST00000547701	ENST00000451288		TCGA	RV	GBM	TCGA-06-2559-01A	CTDSP2	chr12	58240155	-	DCUN1D4	chr4	52765436	+
5UTR-intron	ENST00000488834	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5UTR-intron	ENST00000488834	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000474597	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000244763	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000397511	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000534851	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000489567	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000479365	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000378707		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000359836		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000541735		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000343523		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000378677		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000357033		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000474231		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000378723		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000378702		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000361471		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000378680		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000288447		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-intron	ENST00000462112	ENST00000445312		TCGA	RV	GBM	TCGA-06-2569-01A	SSR1	chr6	7310150	-	DMD	chrX	32328393	-
5CDS-5UTR	ENST00000394507	ENST00000455502		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394507	ENST00000248572		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394507	ENST00000429473		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394507	ENST00000430875		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394507	ENST00000428834		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000340022	ENST00000455502		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000340022	ENST00000248572		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000340022	ENST00000429473		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000340022	ENST00000430875		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000340022	ENST00000428834		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000412043	ENST00000455502		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000412043	ENST00000248572		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000412043	ENST00000429473		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000412043	ENST00000430875		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000412043	ENST00000428834		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394505	ENST00000455502		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394505	ENST00000248572		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394505	ENST00000429473		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394505	ENST00000430875		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394505	ENST00000428834		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394503	ENST00000455502		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394503	ENST00000248572		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394503	ENST00000429473		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394503	ENST00000430875		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
5CDS-5UTR	ENST00000394503	ENST00000428834		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
intron-5UTR	ENST00000466166	ENST00000455502		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
intron-5UTR	ENST00000466166	ENST00000248572		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
intron-5UTR	ENST00000466166	ENST00000429473		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
intron-5UTR	ENST00000466166	ENST00000430875		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
intron-5UTR	ENST00000466166	ENST00000428834		TCGA	RV	GBM	TCGA-32-2615-01A	KRIT1	chr7	91866981	-	GNGT1	chr7	93536048	+
Frame-shit	ENST00000462284	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000462284	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000462284	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000462284	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000462284	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000462284	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000462284	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000462284	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000356290	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000356290	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000356290	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000356290	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000356290	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000356290	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000356290	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000356290	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000540827	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000540827	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000540827	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000540827	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000540827	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000540827	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000540827	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000540827	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000258149	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000258149	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000258149	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258149	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258149	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258149	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258149	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258149	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000428863	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000428863	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000428863	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000428863	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000428863	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000428863	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000428863	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000428863	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393412	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393412	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393412	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393412	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393412	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393412	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393412	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393412	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000258148	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000258148	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000258148	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258148	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258148	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258148	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258148	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000258148	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000544561	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000544561	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000544561	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000544561	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000544561	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000544561	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000544561	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000544561	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393410	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393410	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393410	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393410	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393410	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393410	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393410	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393410	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393413	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393413	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000393413	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393413	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393413	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393413	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393413	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000393413	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000517852	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000517852	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000517852	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000517852	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000517852	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000517852	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000517852	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000517852	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000545204	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000545204	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000545204	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000545204	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000545204	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000545204	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000545204	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000545204	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000350057	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000350057	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000350057	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000350057	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000350057	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000350057	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000350057	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000350057	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000360430	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000360430	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000360430	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000360430	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000360430	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000360430	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000360430	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000360430	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000299252	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000299252	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000299252	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000299252	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000299252	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000299252	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000299252	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000299252	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000348801	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000348801	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000348801	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000348801	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000348801	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000348801	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000348801	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000348801	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000478070	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000478070	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
Frame-shit	ENST00000478070	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000478070	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000478070	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000478070	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000478070	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-intron	ENST00000478070	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-3CDS	ENST00000544125	ENST00000455089		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-3CDS	ENST00000544125	ENST00000342916		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-3CDS	ENST00000544125	ENST00000344576		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-intron	ENST00000544125	ENST00000420316		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-intron	ENST00000544125	ENST00000275493		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-intron	ENST00000544125	ENST00000442591		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-intron	ENST00000544125	ENST00000463948		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
intron-intron	ENST00000544125	ENST00000454757		TCGA	RV	GBM	TCGA-19-2624-01A	MDM2	chr12	69203072	+	EGFR	chr7	55231426	+
5CDS-5UTR	ENST00000263921	ENST00000512091		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-5UTR	ENST00000263921	ENST00000514591		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000511324		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000506700		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000509896		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000545650		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000508693		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000507164		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000507625		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000514157		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000504896		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000514996		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000506720		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000506746		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000508946		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000263921	ENST00000508078		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-5UTR	ENST00000512964	ENST00000512091		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-5UTR	ENST00000512964	ENST00000514591		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000511324		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000506700		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000509896		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000545650		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000508693		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000507164		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000507625		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000514157		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000504896		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000514996		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000506720		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000506746		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000508946		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-intron	ENST00000512964	ENST00000508078		TCGA	RV	GBM	TCGA-19-0957-02A	CHIC2	chr4	54880004	-	LPHN3	chr4	62248842	+
5CDS-5UTR	ENST00000350026	ENST00000461783		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000449545		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000367174		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000456144		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000318981		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000360366		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000529824		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000456877		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000528391		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000350026	ENST00000275246		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-5UTR	ENST00000346085	ENST00000461783		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000449545		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000367174		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000456144		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000318981		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000360366		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000529824		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000456877		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000528391		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000346085	ENST00000275246		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-5UTR	ENST00000367148	ENST00000461783		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000449545		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000367174		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000456144		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000318981		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000360366		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000529824		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000456877		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000528391		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000367148	ENST00000275246		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-5UTR	ENST00000275248	ENST00000461783		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000449545		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000367174		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000456144		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000318981		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000360366		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000529824		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000456877		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000528391		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
5CDS-intron	ENST00000275248	ENST00000275246		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-5UTR	ENST00000478761	ENST00000461783		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000449545		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000367174		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000456144		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000318981		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000360366		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000529824		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000456877		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000528391		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
intron-intron	ENST00000478761	ENST00000275246		TCGA	RV	GBM	TCGA-19-5960-01A	ARID1B	chr6	157100605	+	TIAM2	chr6	155411423	+
Frame-shit	ENST00000449981	ENST00000356757		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-3UTR	ENST00000449981	ENST00000336655		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-5UTR	ENST00000449981	ENST00000497775		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
Frame-shit	ENST00000359357	ENST00000356757		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-3UTR	ENST00000359357	ENST00000336655		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-5UTR	ENST00000359357	ENST00000497775		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
Frame-shit	ENST00000441566	ENST00000356757		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-3UTR	ENST00000441566	ENST00000336655		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-5UTR	ENST00000441566	ENST00000497775		TCGA	RV	GBM	TCGA-06-0129-01A	DNAH8	chr6	38919296	+	TMEM217	chr6	37180772	-
5CDS-intron	ENST00000373996	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5CDS-intron	ENST00000373996	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5CDS-intron	ENST00000313400	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5CDS-intron	ENST00000313400	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5CDS-intron	ENST00000361209	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5CDS-intron	ENST00000361209	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5UTR-intron	ENST00000361477	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
5UTR-intron	ENST00000361477	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
intron-intron	ENST00000288520	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
intron-intron	ENST00000288520	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
intron-intron	ENST00000341734	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
intron-intron	ENST00000341734	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
intron-intron	ENST00000358637	ENST00000464609		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
intron-intron	ENST00000358637	ENST00000219409		TCGA	RV	GBM	TCGA-02-2483-01A	ASTN2	chr9	119976637	-	ARHGDIG	chr16	332025	+
In-frame	ENST00000257897	ENST00000453321		TCGA	RV	GBM	TCGA-06-0178-01A	AGAP2	chr12	58123422	-	TMEM67	chr8	94827533	+
In-frame	ENST00000257897	ENST00000409623		TCGA	RV	GBM	TCGA-06-0178-01A	AGAP2	chr12	58123422	-	TMEM67	chr8	94827533	+
5CDS-intron	ENST00000257897	ENST00000425545		TCGA	RV	GBM	TCGA-06-0178-01A	AGAP2	chr12	58123422	-	TMEM67	chr8	94827533	+
In-frame	ENST00000547588	ENST00000453321		TCGA	RV	GBM	TCGA-06-0178-01A	AGAP2	chr12	58123422	-	TMEM67	chr8	94827533	+
In-frame	ENST00000547588	ENST00000409623		TCGA	RV	GBM	TCGA-06-0178-01A	AGAP2	chr12	58123422	-	TMEM67	chr8	94827533	+
5CDS-intron	ENST00000547588	ENST00000425545		TCGA	RV	GBM	TCGA-06-0178-01A	AGAP2	chr12	58123422	-	TMEM67	chr8	94827533	+
Frame-shit	ENST00000303375	ENST00000587250		TCGA	RV	GBM	TCGA-27-2524-01A	MRC2	chr17	60705281	+	RND2	chr17	41177977	+
Frame-shit	ENST00000303375	ENST00000544533		TCGA	RV	GBM	TCGA-27-2524-01A	MRC2	chr17	60705281	+	RND2	chr17	41177977	+
intron-3CDS	ENST00000446119	ENST00000587250		TCGA	RV	GBM	TCGA-27-2524-01A	MRC2	chr17	60705281	+	RND2	chr17	41177977	+
intron-3CDS	ENST00000446119	ENST00000544533		TCGA	RV	GBM	TCGA-27-2524-01A	MRC2	chr17	60705281	+	RND2	chr17	41177977	+
intron-3CDS	ENST00000580916	ENST00000587250		TCGA	RV	GBM	TCGA-27-2524-01A	MRC2	chr17	60705281	+	RND2	chr17	41177977	+
intron-3CDS	ENST00000580916	ENST00000544533		TCGA	RV	GBM	TCGA-27-2524-01A	MRC2	chr17	60705281	+	RND2	chr17	41177977	+
In-frame	ENST00000318522	ENST00000421587		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000318522	ENST00000318588		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000318522	ENST00000361962		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000318522	ENST00000378163		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000318522	ENST00000378158		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000318522	ENST00000378166		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000318522	ENST00000442742		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5CDS-5UTR	ENST00000318522	ENST00000472704		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5CDS-5UTR	ENST00000318522	ENST00000378154		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000421587		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000318588		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000361962		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000378163		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000378158		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000378166		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000402711	ENST00000442742		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5CDS-5UTR	ENST00000402711	ENST00000472704		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5CDS-5UTR	ENST00000402711	ENST00000378154		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000421587		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000318588		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000361962		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000378163		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000378158		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000378166		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-3CDS	ENST00000482660	ENST00000442742		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-5UTR	ENST00000482660	ENST00000472704		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
3UTR-5UTR	ENST00000482660	ENST00000378154		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000421587		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000318588		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000361962		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000378163		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000378158		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000378166		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
In-frame	ENST00000401738	ENST00000442742		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5CDS-5UTR	ENST00000401738	ENST00000472704		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5CDS-5UTR	ENST00000401738	ENST00000378154		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000421587		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000318588		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000361962		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000378163		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000378158		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000378166		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-3CDS	ENST00000453191	ENST00000442742		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-5UTR	ENST00000453191	ENST00000472704		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
intron-5UTR	ENST00000453191	ENST00000378154		TCGA	RV	GBM	TCGA-06-0158-01A	EML4	chr2	42396776	+	CASK	chrX	41420897	-
5UTR-3CDS	ENST00000264229	ENST00000511469		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
5UTR-3CDS	ENST00000264229	ENST00000264218		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
5UTR-3CDS	ENST00000264229	ENST00000505262		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
5UTR-3CDS	ENST00000264229	ENST00000507338		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
5UTR-5UTR	ENST00000264229	ENST00000515325		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000541073	ENST00000511469		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000541073	ENST00000264218		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000541073	ENST00000505262		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000541073	ENST00000507338		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-5UTR	ENST00000541073	ENST00000515325		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000504228	ENST00000511469		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000504228	ENST00000264218		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000504228	ENST00000505262		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000504228	ENST00000507338		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-5UTR	ENST00000504228	ENST00000515325		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000505410	ENST00000511469		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000505410	ENST00000264218		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000505410	ENST00000505262		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-3CDS	ENST00000505410	ENST00000507338		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
intron-5UTR	ENST00000505410	ENST00000515325		TCGA	RV	GBM	TCGA-06-2559-01A	KIAA1211	chr4	57045596	+	NMU	chr4	56496627	-
In-frame	ENST00000338586	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000338586	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338586	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338586	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338586	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338586	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338586	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338586	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000338515	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000338515	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338515	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338515	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338515	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338515	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338515	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000338515	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367171	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367171	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367171	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367171	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367171	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367171	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367171	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367171	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367169	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367169	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367169	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367169	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367169	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367169	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367169	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367169	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000539706	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000539706	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000539706	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000539706	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000539706	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000539706	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000539706	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000539706	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000339876	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000339876	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000339876	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000339876	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000339876	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000339876	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000339876	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000339876	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367170	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367170	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367170	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367170	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367170	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367170	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367170	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367170	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000360049	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000360049	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000360049	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000360049	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000360049	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000360049	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000360049	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000360049	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367172	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000367172	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367172	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367172	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367172	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367172	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367172	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000367172	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-3CDS	ENST00000403080	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-3CDS	ENST00000403080	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000403080	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000403080	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000403080	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000403080	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000403080	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000403080	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000404076	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000404076	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404076	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404076	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404076	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404076	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404076	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404076	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000401399	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000401399	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000401399	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000401399	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000401399	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000401399	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000401399	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000401399	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000404907	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000404907	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404907	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404907	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404907	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404907	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404907	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000404907	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000513543	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
In-frame	ENST00000513543	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000513543	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000513543	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000513543	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000513543	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000513543	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
5CDS-intron	ENST00000513543	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-3CDS	ENST00000495396	ENST00000341307		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-3CDS	ENST00000495396	ENST00000356000		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000495396	ENST00000538995		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000495396	ENST00000377819		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000495396	ENST00000339997		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000495396	ENST00000540798		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000495396	ENST00000537981		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
intron-intron	ENST00000495396	ENST00000354497		TCGA	RV	GBM	TCGA-12-1597-01B	NFASC	chr1	204951148	+	RTN3	chr11	63525628	+
Frame-shit	ENST00000370206	ENST00000370205		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000370206	ENST00000495856		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
Frame-shit	ENST00000538964	ENST00000370205		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000538964	ENST00000495856		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
Frame-shit	ENST00000394202	ENST00000370205		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000394202	ENST00000495856		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-3CDS	ENST00000545882	ENST00000370205		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-intron	ENST00000545882	ENST00000495856		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-3CDS	ENST00000487539	ENST00000370205		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-intron	ENST00000487539	ENST00000495856		TCGA	RV	GBM	TCGA-26-5136-01B	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
In-frame	ENST00000540080	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000433436	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000538225	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000345519	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000470744	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000242285	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000466396	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000396603	ENST00000263228		TCGA	RV	GBM	TCGA-28-5204-01A	CLTA	chr9	36204176	+	UBE2R2	chr9	33911962	+
In-frame	ENST00000448507	ENST00000307358		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000448507	ENST00000382512		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000409757	ENST00000307358		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000409757	ENST00000382512		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000410031	ENST00000307358		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000410031	ENST00000382512		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000451522	ENST00000307358		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
In-frame	ENST00000451522	ENST00000382512		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000446947	ENST00000307358		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
intron-3CDS	ENST00000446947	ENST00000382512		TCGA	RV	GBM	TCGA-28-5204-01A	TBC1D14	chr4	6996029	+	HTRA3	chr4	8288288	+
Frame-shit	ENST00000257897	ENST00000228606		TCGA	RV	GBM	TCGA-12-1597-01B	AGAP2	chr12	58127809	-	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000257897	ENST00000546496		TCGA	RV	GBM	TCGA-12-1597-01B	AGAP2	chr12	58127809	-	CYP27B1	chr12	58159980	-
Frame-shit	ENST00000547588	ENST00000228606		TCGA	RV	GBM	TCGA-12-1597-01B	AGAP2	chr12	58127809	-	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000547588	ENST00000546496		TCGA	RV	GBM	TCGA-12-1597-01B	AGAP2	chr12	58127809	-	CYP27B1	chr12	58159980	-
In-frame	ENST00000358387	ENST00000315717		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
In-frame	ENST00000358387	ENST00000295685		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
5CDS-3UTR	ENST00000358387	ENST00000477992		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
intron-3CDS	ENST00000546290	ENST00000315717		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
intron-3CDS	ENST00000546290	ENST00000295685		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
intron-3UTR	ENST00000546290	ENST00000477992		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
intron-3CDS	ENST00000502625	ENST00000315717		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
intron-3CDS	ENST00000502625	ENST00000295685		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
intron-3UTR	ENST00000502625	ENST00000477992		TCGA	RV	GBM	TCGA-06-5415-01A	TXNDC15	chr5	134210220	+	ARPC2	chr2	219103387	+
5CDS-5UTR	ENST00000216267	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000216267	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000216267	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000216267	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404034	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404034	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404034	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404034	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404760	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404760	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404760	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000404760	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000457780	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000457780	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000457780	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000457780	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000542442	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000542442	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000542442	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000542442	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000342989	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000342989	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000342989	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-5UTR	ENST00000342989	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
intron-5UTR	ENST00000459821	ENST00000497036		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
intron-5UTR	ENST00000459821	ENST00000395780		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
intron-5UTR	ENST00000459821	ENST00000215659		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
intron-5UTR	ENST00000459821	ENST00000395778		TCGA	RV	GBM	TCGA-06-0648-01A	BRD1	chr22	50181038	-	MAPK12	chr22	50696730	-
5CDS-intron	ENST00000380512	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000380512	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000380512	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-intron	ENST00000293831	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000293831	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000293831	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-intron	ENST00000577269	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000577269	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000577269	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-intron	ENST00000582746	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000582746	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
5CDS-5UTR	ENST00000582746	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
intron-intron	ENST00000581808	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
intron-5UTR	ENST00000581808	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
intron-5UTR	ENST00000581808	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-02B	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302493	-
In-frame	ENST00000405546	ENST00000305784		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5CDS-intron	ENST00000405546	ENST00000493095		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5UTR-3CDS	ENST00000402096	ENST00000305784		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5UTR-intron	ENST00000402096	ENST00000493095		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
In-frame	ENST00000404914	ENST00000305784		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5CDS-intron	ENST00000404914	ENST00000493095		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
3UTR-3CDS	ENST00000491867	ENST00000305784		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
3UTR-intron	ENST00000491867	ENST00000493095		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5UTR-3CDS	ENST00000396411	ENST00000305784		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5UTR-intron	ENST00000396411	ENST00000493095		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
Frame-shit	ENST00000474739	ENST00000305784		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
5CDS-intron	ENST00000474739	ENST00000493095		TCGA	RV	GBM	TCGA-32-2615-01A	ATG4B	chr2	242590750	+	DTYMK	chr2	242615652	-
Frame-shit	ENST00000380512	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
In-frame	ENST00000380512	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
In-frame	ENST00000380512	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000293831	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000293831	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000293831	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000577269	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000577269	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000577269	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000582746	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000582746	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
Frame-shit	ENST00000582746	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
intron-3CDS	ENST00000581808	ENST00000310544		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
intron-3CDS	ENST00000581808	ENST00000413580		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
intron-3CDS	ENST00000581808	ENST00000514112		TCGA	RV	GBM	TCGA-14-1034-01A	EIF4A1	chr17	7478576	+	PHOSPHO1	chr17	47302366	-
5CDS-5UTR	ENST00000302349	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000302349	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000302349	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000302349	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000302349	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000541076	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000541076	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000541076	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000541076	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000541076	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000606320	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000606320	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000606320	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000606320	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000606320	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000392425	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000392425	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000392425	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000392425	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000392425	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000539639	ENST00000510325		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000539639	ENST00000359359		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000539639	ENST00000480824		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000539639	ENST00000355190		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
intron-intron	ENST00000539639	ENST00000373685		TCGA	RV	GBM	TCGA-06-0129-01A	MPHOSPH9	chr12	123678933	-	C6orf89	chr6	36846784	+
In-frame	ENST00000308177	ENST00000275262		TCGA	RV	GBM	TCGA-06-0129-01A	PCDHGC3	chr5	140858113	+	QKI	chr6	163956014	+
In-frame	ENST00000308177	ENST00000392127		TCGA	RV	GBM	TCGA-06-0129-01A	PCDHGC3	chr5	140858113	+	QKI	chr6	163956014	+
In-frame	ENST00000308177	ENST00000453779		TCGA	RV	GBM	TCGA-06-0129-01A	PCDHGC3	chr5	140858113	+	QKI	chr6	163956014	+
In-frame	ENST00000308177	ENST00000361752		TCGA	RV	GBM	TCGA-06-0129-01A	PCDHGC3	chr5	140858113	+	QKI	chr6	163956014	+
In-frame	ENST00000308177	ENST00000361195		TCGA	RV	GBM	TCGA-06-0129-01A	PCDHGC3	chr5	140858113	+	QKI	chr6	163956014	+
In-frame	ENST00000308177	ENST00000424802		TCGA	RV	GBM	TCGA-06-0129-01A	PCDHGC3	chr5	140858113	+	QKI	chr6	163956014	+
5UTR-5UTR	ENST00000338586	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000338515	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367171	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367169	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000539706	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000339876	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367170	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000360049	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367172	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000403080	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000404076	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000401399	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000404907	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000513543	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000495396	ENST00000343110		TCGA	RV	GBM	TCGA-06-0210-01A	NFASC	chr1	204797910	+	PRELP	chr1	203452297	+
5CDS-5UTR	ENST00000394121	ENST00000301659		TCGA	RV	GBM	TCGA-16-1045-01B	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000264637	ENST00000301659		TCGA	RV	GBM	TCGA-16-1045-01B	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000584985	ENST00000301659		TCGA	RV	GBM	TCGA-16-1045-01B	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000450525	ENST00000301659		TCGA	RV	GBM	TCGA-16-1045-01B	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000546243	ENST00000301659		TCGA	RV	GBM	TCGA-16-1045-01B	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5UTR-5UTR	ENST00000250559	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000250559	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000250559	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000250559	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000393436	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000393436	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000393436	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000393436	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000341355	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000341355	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000341355	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000341355	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000537460	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000537460	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000537460	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000537460	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000463493	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000463493	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000463493	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
intron-intron	ENST00000463493	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000450214	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000450214	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000450214	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000450214	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000543393	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000543393	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000543393	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000543393	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000378985	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000378985	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000378985	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000378985	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000540209	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000540209	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000540209	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000540209	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000539091	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000539091	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000539091	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000539091	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000542145	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000542145	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000542145	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000542145	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000543697	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000543697	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000543697	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000543697	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000541216	ENST00000546373		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000541216	ENST00000551568		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000541216	ENST00000338356		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000541216	ENST00000549691		TCGA	RV	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	CPM	chr12	69326620	-
In-frame	ENST00000335263	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000335263	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
Frame-shit	ENST00000424963	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
Frame-shit	ENST00000424963	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000322340	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000322340	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
5UTR-3CDS	ENST00000499851	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
5UTR-3CDS	ENST00000499851	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000342702	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000342702	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000556807	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000556807	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000558567	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000558567	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000299135	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000299135	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000454394	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000454394	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000556511	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
In-frame	ENST00000556511	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
3UTR-3CDS	ENST00000557186	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
3UTR-3CDS	ENST00000557186	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
intron-3CDS	ENST00000545563	ENST00000591090		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
intron-3CDS	ENST00000545563	ENST00000357332		TCGA	RV	GBM	TCGA-14-0736-02A	WDR20	chr14	102606509	+	ASNA1	chr19	12856191	+
5UTR-3CDS	ENST00000344318	ENST00000307790		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-3CDS	ENST00000344318	ENST00000397771		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-3CDS	ENST00000344318	ENST00000542393		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-intron	ENST00000344318	ENST00000478812		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-3CDS	ENST00000397781	ENST00000307790		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-3CDS	ENST00000397781	ENST00000397771		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-3CDS	ENST00000397781	ENST00000542393		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
5UTR-intron	ENST00000397781	ENST00000478812		TCGA	RV	GBM	TCGA-41-2572-01A	ZMAT5	chr22	30162861	-	ASCC2	chr22	30186537	-
Frame-shit	ENST00000367142	ENST00000367136		TCGA	RV	GBM	TCGA-19-2619-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205811017	-
5CDS-5UTR	ENST00000367142	ENST00000460624		TCGA	RV	GBM	TCGA-19-2619-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205811017	-
intron-3CDS	ENST00000464938	ENST00000367136		TCGA	RV	GBM	TCGA-19-2619-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205811017	-
intron-5UTR	ENST00000464938	ENST00000460624		TCGA	RV	GBM	TCGA-19-2619-01A	NUCKS1	chr1	205719085	-	PM20D1	chr1	205811017	-
Frame-shit	ENST00000597960	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000597960	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000597960	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000597960	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000597960	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000610101	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000610101	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000610101	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000610101	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000610101	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000596558	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000596558	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000596558	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000596558	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000596558	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000222308	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000222308	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000222308	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000222308	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000222308	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000608443	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000608443	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000608443	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000608443	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000608443	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000453489	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000453489	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000453489	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000453489	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000453489	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-02B	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-5UTR	ENST00000179259	ENST00000537971		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
5CDS-5UTR	ENST00000179259	ENST00000011898		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
5CDS-5UTR	ENST00000179259	ENST00000407263		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
5CDS-intron	ENST00000179259	ENST00000492305		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
intron-5UTR	ENST00000537251	ENST00000537971		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
intron-5UTR	ENST00000537251	ENST00000011898		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
intron-5UTR	ENST00000537251	ENST00000407263		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
intron-intron	ENST00000537251	ENST00000492305		TCGA	RV	GBM	TCGA-06-0157-01A	C12orf5	chr12	4430469	+	TSPAN9	chr12	3310343	+
Frame-shit	ENST00000300146	ENST00000392793		TCGA	RV	GBM	TCGA-26-5132-01A	PATL1	chr11	59434326	-	TECTA	chr11	121058541	+
Frame-shit	ENST00000300146	ENST00000264037		TCGA	RV	GBM	TCGA-26-5132-01A	PATL1	chr11	59434326	-	TECTA	chr11	121058541	+
5CDS-intron	ENST00000300146	ENST00000478058		TCGA	RV	GBM	TCGA-26-5132-01A	PATL1	chr11	59434326	-	TECTA	chr11	121058541	+
In-frame	ENST00000280979	ENST00000250457		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
In-frame	ENST00000280979	ENST00000553215		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000280979	ENST00000547327		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000280979	ENST00000557521		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
In-frame	ENST00000557354	ENST00000250457		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
In-frame	ENST00000557354	ENST00000553215		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000557354	ENST00000547327		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000557354	ENST00000557521		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
In-frame	ENST00000557272	ENST00000250457		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
In-frame	ENST00000557272	ENST00000553215		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000557272	ENST00000547327		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000557272	ENST00000557521		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
3UTR-3CDS	ENST00000554449	ENST00000250457		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
3UTR-3CDS	ENST00000554449	ENST00000553215		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
3UTR-intron	ENST00000554449	ENST00000547327		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
3UTR-intron	ENST00000554449	ENST00000557521		TCGA	RV	GBM	TCGA-06-5413-01A	AKAP6	chr14	32903023	+	EGLN3	chr14	34400421	-
5UTR-3CDS	ENST00000554144	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
5UTR-3CDS	ENST00000420433	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
5UTR-3CDS	ENST00000556376	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000381260	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
5UTR-3CDS	ENST00000337881	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
5UTR-3CDS	ENST00000605395	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000508121	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000503639	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000553379	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000381255	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000317745	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000555760	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
intron-3CDS	ENST00000556614	ENST00000295645		TCGA	RV	GBM	TCGA-06-2559-01A	HOPX	chr4	57547421	-	PDCL2	chr4	56448404	-
In-frame	ENST00000356401	ENST00000296435		TCGA	RV	GBM	TCGA-14-2554-01A	ARIH2	chr3	48965246	+	CAMP	chr3	48265844	+
In-frame	ENST00000356401	ENST00000576243		TCGA	RV	GBM	TCGA-14-2554-01A	ARIH2	chr3	48965246	+	CAMP	chr3	48265844	+
In-frame	ENST00000449376	ENST00000296435		TCGA	RV	GBM	TCGA-14-2554-01A	ARIH2	chr3	48965246	+	CAMP	chr3	48265844	+
In-frame	ENST00000449376	ENST00000576243		TCGA	RV	GBM	TCGA-14-2554-01A	ARIH2	chr3	48965246	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000490095	ENST00000296435		TCGA	RV	GBM	TCGA-14-2554-01A	ARIH2	chr3	48965246	+	CAMP	chr3	48265844	+
intron-3CDS	ENST00000490095	ENST00000576243		TCGA	RV	GBM	TCGA-14-2554-01A	ARIH2	chr3	48965246	+	CAMP	chr3	48265844	+
Frame-shit	ENST00000455089	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
5CDS-intron	ENST00000455089	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
Frame-shit	ENST00000342916	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
5CDS-intron	ENST00000342916	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
Frame-shit	ENST00000344576	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
5CDS-intron	ENST00000344576	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
Frame-shit	ENST00000420316	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
5CDS-intron	ENST00000420316	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
Frame-shit	ENST00000275493	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
5CDS-intron	ENST00000275493	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
Frame-shit	ENST00000442591	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
5CDS-intron	ENST00000442591	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
3UTR-3CDS	ENST00000463948	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
3UTR-intron	ENST00000463948	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
intron-3CDS	ENST00000454757	ENST00000228705		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
intron-intron	ENST00000454757	ENST00000551214		TCGA	RV	GBM	TCGA-19-2624-01A	EGFR	chr7	55087058	+	PPM1H	chr12	63195940	-
In-frame	ENST00000261318	ENST00000462284		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000261318	ENST00000356290		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000261318	ENST00000540827		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000261318	ENST00000258149		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000261318	ENST00000428863		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000393412		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000258148		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000544561		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000393410		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000393413		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000517852		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000545204		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000350057		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000360430		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000299252		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000348801		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000478070		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000261318	ENST00000544125		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-3CDS	ENST00000548356	ENST00000462284		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-3CDS	ENST00000548356	ENST00000356290		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-3CDS	ENST00000548356	ENST00000540827		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-3CDS	ENST00000548356	ENST00000258149		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-3CDS	ENST00000548356	ENST00000428863		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000393412		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000258148		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000544561		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000393410		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000393413		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000517852		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000545204		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000350057		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000360430		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000299252		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000348801		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000478070		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
intron-intron	ENST00000548356	ENST00000544125		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000536380	ENST00000462284		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000536380	ENST00000356290		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000536380	ENST00000540827		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000536380	ENST00000258149		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
In-frame	ENST00000536380	ENST00000428863		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000393412		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000258148		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000544561		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000393410		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000393413		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000517852		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000545204		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000350057		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000360430		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000299252		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000348801		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000478070		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
5CDS-intron	ENST00000536380	ENST00000544125		TCGA	RV	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	MDM2	chr12	69229609	+
Frame-shit	ENST00000597960	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000597960	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000597960	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000597960	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000597960	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000610101	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000610101	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000610101	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000610101	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000610101	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000596558	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000596558	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000596558	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000596558	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000596558	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000222308	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000222308	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000222308	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000222308	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000222308	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000608443	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000608443	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000608443	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000608443	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000608443	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000453489	ENST00000430939		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000453489	ENST00000221742		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000453489	ENST00000600144		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000453489	ENST00000598504		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000453489	ENST00000544886		TCGA	RV	GBM	TCGA-14-1034-01A	FKBP8	chr19	18644080	-	SLC1A6	chr19	15061202	-
5CDS-5UTR	ENST00000372733	ENST00000423431		TCGA	RV	GBM	TCGA-12-5295-01A	SDC4	chr20	43976965	-	SPCS1	chr3	52740660	+
5CDS-5UTR	ENST00000372733	ENST00000233025		TCGA	RV	GBM	TCGA-12-5295-01A	SDC4	chr20	43976965	-	SPCS1	chr3	52740660	+
5CDS-5UTR	ENST00000372733	ENST00000602728		TCGA	RV	GBM	TCGA-12-5295-01A	SDC4	chr20	43976965	-	SPCS1	chr3	52740660	+
5UTR-5UTR	ENST00000537976	ENST00000423431		TCGA	RV	GBM	TCGA-12-5295-01A	SDC4	chr20	43976965	-	SPCS1	chr3	52740660	+
5UTR-5UTR	ENST00000537976	ENST00000233025		TCGA	RV	GBM	TCGA-12-5295-01A	SDC4	chr20	43976965	-	SPCS1	chr3	52740660	+
5UTR-5UTR	ENST00000537976	ENST00000602728		TCGA	RV	GBM	TCGA-12-5295-01A	SDC4	chr20	43976965	-	SPCS1	chr3	52740660	+
Frame-shit	ENST00000377093	ENST00000253251		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377093	ENST00000377157		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377093	ENST00000343090		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377093	ENST00000377153		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377093	ENST00000475795		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000263934	ENST00000253251		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000263934	ENST00000377157		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000263934	ENST00000343090		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000263934	ENST00000377153		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000263934	ENST00000475795		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377086	ENST00000253251		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377086	ENST00000377157		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377086	ENST00000343090		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377086	ENST00000377153		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377086	ENST00000475795		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377083	ENST00000253251		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377083	ENST00000377157		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377083	ENST00000343090		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377083	ENST00000377153		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377083	ENST00000475795		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377081	ENST00000253251		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377081	ENST00000377157		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
Frame-shit	ENST00000377081	ENST00000343090		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377081	ENST00000377153		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
5CDS-intron	ENST00000377081	ENST00000475795		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000465635	ENST00000253251		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000465635	ENST00000377157		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000465635	ENST00000343090		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000465635	ENST00000377153		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000465635	ENST00000475795		TCGA	RV	GBM	TCGA-16-1045-01B	KIF1B	chr1	10292492	+	UBE4B	chr1	10238702	+
In-frame	ENST00000393446	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393446	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393446	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000393446	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393446	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000265437	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000265437	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000265437	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000265437	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000265437	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393451	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393451	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393451	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000393451	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393451	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393449	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393449	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393449	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000393449	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000393449	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000323984	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000323984	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000323984	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000323984	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000323984	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000432298	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000432298	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000432298	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000432298	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000432298	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000422922	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000422922	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000422922	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000422922	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000422922	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000487459	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000487459	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000487459	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000487459	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000487459	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393443	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393443	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393443	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393443	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393443	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393447	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393447	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393447	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393447	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393447	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393444	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393444	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393444	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393444	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000393444	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000465133	ENST00000341049		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000465133	ENST00000393470		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000465133	ENST00000405348		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000465133	ENST00000393468		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000465133	ENST00000393467		TCGA	RV	GBM	TCGA-06-0184-01A	ST7	chr7	116593745	+	CAV1	chr7	116199000	+
In-frame	ENST00000310823	ENST00000381844		TCGA	RV	GBM	TCGA-76-4929-01A	ADAM17	chr2	9675963	-	YWHAQ	chr2	9731644	-
In-frame	ENST00000310823	ENST00000238081		TCGA	RV	GBM	TCGA-76-4929-01A	ADAM17	chr2	9675963	-	YWHAQ	chr2	9731644	-
5CDS-5UTR	ENST00000310823	ENST00000474715		TCGA	RV	GBM	TCGA-76-4929-01A	ADAM17	chr2	9675963	-	YWHAQ	chr2	9731644	-
In-frame	ENST00000497134	ENST00000381844		TCGA	RV	GBM	TCGA-76-4929-01A	ADAM17	chr2	9675963	-	YWHAQ	chr2	9731644	-
In-frame	ENST00000497134	ENST00000238081		TCGA	RV	GBM	TCGA-76-4929-01A	ADAM17	chr2	9675963	-	YWHAQ	chr2	9731644	-
5CDS-5UTR	ENST00000497134	ENST00000474715		TCGA	RV	GBM	TCGA-76-4929-01A	ADAM17	chr2	9675963	-	YWHAQ	chr2	9731644	-
5CDS-intron	ENST00000296328	ENST00000455270		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5CDS-5UTR	ENST00000296328	ENST00000296277		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5CDS-5UTR	ENST00000296328	ENST00000433055		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5UTR-intron	ENST00000428095	ENST00000455270		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5UTR-5UTR	ENST00000428095	ENST00000296277		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5UTR-5UTR	ENST00000428095	ENST00000433055		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5UTR-intron	ENST00000535858	ENST00000455270		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5UTR-5UTR	ENST00000535858	ENST00000296277		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5UTR-5UTR	ENST00000535858	ENST00000433055		TCGA	RV	GBM	TCGA-06-5415-01A	UBXN7	chr3	196159198	-	RPL39L	chr3	186845850	-
5CDS-intron	ENST00000413953	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000413953	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000413953	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000413953	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000422156		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000540759		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000550465		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000354947		TCGA	RV	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57689182	-	PIP4K2C	chr12	57989671	+
In-frame	ENST00000398073	ENST00000267103		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000398073	ENST00000548632		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000398073	ENST00000549488		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
In-frame	ENST00000548823	ENST00000267103		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000548823	ENST00000548632		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000548823	ENST00000549488		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
intron-3CDS	ENST00000547701	ENST00000267103		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
intron-intron	ENST00000547701	ENST00000548632		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
intron-intron	ENST00000547701	ENST00000549488		TCGA	RV	GBM	TCGA-41-2571-01A	CTDSP2	chr12	58240155	-	C12orf10	chr12	53699692	+
In-frame	ENST00000374865	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	MRPL50	chr9	104160783	-	ERP44	chr9	102822454	-
In-frame	ENST00000539624	ENST00000262455		TCGA	RV	GBM	TCGA-06-0744-01A	MRPL50	chr9	104160783	-	ERP44	chr9	102822454	-
In-frame	ENST00000338586	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338586	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338586	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338586	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000338586	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338515	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338515	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338515	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000338515	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000338515	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367171	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367171	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367171	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367171	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000367171	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367169	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367169	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367169	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367169	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000367169	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000539706	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000539706	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000539706	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000539706	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000539706	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000339876	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000339876	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000339876	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000339876	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000339876	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367170	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367170	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367170	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367170	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000367170	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360049	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360049	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360049	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360049	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000360049	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367172	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367172	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367172	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000367172	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000367172	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000403080	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000403080	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000403080	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000403080	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-intron	ENST00000403080	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404076	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404076	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404076	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404076	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000404076	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000401399	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000401399	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000401399	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000401399	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000401399	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404907	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404907	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404907	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000404907	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000404907	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000513543	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000513543	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000513543	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
In-frame	ENST00000513543	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000513543	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000495396	ENST00000392302		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000495396	ENST00000368196		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000495396	ENST00000524377		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000495396	ENST00000358660		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
intron-intron	ENST00000495396	ENST00000531606		TCGA	RV	GBM	TCGA-06-5411-01A	NFASC	chr1	204951148	+	NTRK1	chr1	156844363	+
Frame-shit	ENST00000552285	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
In-frame	ENST00000552285	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000552285	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000552285	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000315970	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
In-frame	ENST00000315970	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000315970	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000315970	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000439210	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
In-frame	ENST00000439210	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000439210	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000439210	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000389146	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
In-frame	ENST00000389146	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000389146	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000389146	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000413095	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000413095	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000413095	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-intron	ENST00000413095	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000551035	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000551035	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000551035	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-intron	ENST00000551035	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000435406	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000435406	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-3CDS	ENST00000435406	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
intron-intron	ENST00000435406	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000257966	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
In-frame	ENST00000257966	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000257966	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000257966	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000389142	ENST00000311915		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
In-frame	ENST00000389142	ENST00000544871		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000389142	ENST00000398055		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000389142	ENST00000540673		TCGA	RV	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	C12orf66	chr12	64588438	-
5UTR-intron	ENST00000299293	ENST00000355192		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000299293	ENST00000308259		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000299293	ENST00000540804		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000299293	ENST00000535664		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000299293	ENST00000538725		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000549921	ENST00000355192		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000549921	ENST00000308259		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000549921	ENST00000540804		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000549921	ENST00000535664		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000549921	ENST00000538725		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000550389	ENST00000355192		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000550389	ENST00000308259		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000550389	ENST00000540804		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000550389	ENST00000535664		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
5UTR-intron	ENST00000550389	ENST00000538725		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000397997	ENST00000355192		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000397997	ENST00000308259		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000397997	ENST00000540804		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000397997	ENST00000535664		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
intron-intron	ENST00000397997	ENST00000538725		TCGA	RV	GBM	TCGA-06-0138-01A	FRS2	chr12	69864310	+	MSRB3	chr12	65881784	+
Frame-shit	ENST00000389629	ENST00000394907		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
5CDS-intron	ENST00000389629	ENST00000535975		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
5CDS-intron	ENST00000389629	ENST00000305435		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
5CDS-intron	ENST00000389629	ENST00000563582		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
3UTR-3CDS	ENST00000462276	ENST00000394907		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
3UTR-intron	ENST00000462276	ENST00000535975		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
3UTR-intron	ENST00000462276	ENST00000305435		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
3UTR-intron	ENST00000462276	ENST00000563582		TCGA	LD	GBM	TCGA-02-0055-01A	RTF1	chr15	41709511	+	NRG4	chr15	76248352	-
5CDS-3UTR	ENST00000548256	ENST00000551553		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000548256	ENST00000266646		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5UTR-3UTR	ENST00000551420	ENST00000551553		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5UTR-3UTR	ENST00000551420	ENST00000266646		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000300209	ENST00000551553		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000300209	ENST00000266646		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
intron-3UTR	ENST00000552307	ENST00000551553		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
intron-3UTR	ENST00000552307	ENST00000266646		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000333012	ENST00000551553		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000333012	ENST00000266646		TCGA	LD	GBM	TCGA-02-2485-01A	METTL21B	chr12	58166911	+	INHBE	chr12	57849877	+
intron-3CDS	ENST00000413953	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000413953	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3UTR	ENST00000413953	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
5UTR-3CDS	ENST00000347140	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
5UTR-3CDS	ENST00000347140	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
5UTR-3UTR	ENST00000347140	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000358907	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000358907	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3UTR	ENST00000358907	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
5UTR-3CDS	ENST00000402412	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
5UTR-3CDS	ENST00000402412	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
5UTR-3UTR	ENST00000402412	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000441731	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000441731	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3UTR	ENST00000441731	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000403821	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000403821	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3UTR	ENST00000403821	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000546843	ENST00000262027		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3CDS	ENST00000546843	ENST00000315473		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
intron-3UTR	ENST00000546843	ENST00000447721		TCGA	LD	GBM	TCGA-02-2485-01A	R3HDM2	chr12	57824503	-	MARS	chr12	57898008	+
Frame-shit	ENST00000373381	ENST00000379959		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
Frame-shit	ENST00000373381	ENST00000379954		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
Frame-shit	ENST00000373381	ENST00000256876		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373380	ENST00000379959		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373380	ENST00000379954		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373380	ENST00000256876		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373377	ENST00000379959		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373377	ENST00000379954		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373377	ENST00000256876		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373388	ENST00000379959		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373388	ENST00000379954		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000373388	ENST00000256876		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000489419	ENST00000379959		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000489419	ENST00000379954		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000489419	ENST00000256876		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000338325	ENST00000379959		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000338325	ENST00000379954		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
intron-3CDS	ENST00000338325	ENST00000256876		TCGA	LD	GBM	TCGA-02-2486-01A	CSMD2	chr1	34312485	-	IL2RA	chr10	6060082	-
In-frame	ENST00000377648	ENST00000377828		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
5CDS-intron	ENST00000377648	ENST00000461727		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
5CDS-intron	ENST00000377648	ENST00000475228		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
5CDS-intron	ENST00000377648	ENST00000416731		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
3UTR-3CDS	ENST00000495385	ENST00000377828		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
3UTR-intron	ENST00000495385	ENST00000461727		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
3UTR-intron	ENST00000495385	ENST00000475228		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
3UTR-intron	ENST00000495385	ENST00000416731		TCGA	LD	GBM	TCGA-02-2486-01A	PHF13	chr1	6674165	+	ESPN	chr1	6488286	+
In-frame	ENST00000230640	ENST00000356956		TCGA	LD	GBM	TCGA-02-2486-01A	SKIV2L2	chr5	54603975	+	IGF2R	chr6	160412216	+
5CDS-intron	ENST00000230640	ENST00000475584		TCGA	LD	GBM	TCGA-02-2486-01A	SKIV2L2	chr5	54603975	+	IGF2R	chr6	160412216	+
Frame-shit	ENST00000545714	ENST00000356956		TCGA	LD	GBM	TCGA-02-2486-01A	SKIV2L2	chr5	54603975	+	IGF2R	chr6	160412216	+
5CDS-intron	ENST00000545714	ENST00000475584		TCGA	LD	GBM	TCGA-02-2486-01A	SKIV2L2	chr5	54603975	+	IGF2R	chr6	160412216	+
3UTR-3CDS	ENST00000504388	ENST00000356956		TCGA	LD	GBM	TCGA-02-2486-01A	SKIV2L2	chr5	54603975	+	IGF2R	chr6	160412216	+
3UTR-intron	ENST00000504388	ENST00000475584		TCGA	LD	GBM	TCGA-02-2486-01A	SKIV2L2	chr5	54603975	+	IGF2R	chr6	160412216	+
In-frame	ENST00000545122	ENST00000373381		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000545122	ENST00000373380		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000545122	ENST00000373377		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000545122	ENST00000373388		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000545122	ENST00000489419		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000545122	ENST00000338325		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
Frame-shit	ENST00000309777	ENST00000373381		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000309777	ENST00000373380		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000309777	ENST00000373377		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000309777	ENST00000373388		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000309777	ENST00000489419		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000309777	ENST00000338325		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
intron-3CDS	ENST00000373593	ENST00000373381		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
intron-intron	ENST00000373593	ENST00000373380		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
intron-intron	ENST00000373593	ENST00000373377		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
intron-intron	ENST00000373593	ENST00000373388		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
intron-intron	ENST00000373593	ENST00000489419		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
intron-intron	ENST00000373593	ENST00000338325		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
Frame-shit	ENST00000344461	ENST00000373381		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000344461	ENST00000373380		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000344461	ENST00000373377		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000344461	ENST00000373388		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000344461	ENST00000489419		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5CDS-intron	ENST00000344461	ENST00000338325		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-3CDS	ENST00000485689	ENST00000373381		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-intron	ENST00000485689	ENST00000373380		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-intron	ENST00000485689	ENST00000373377		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-intron	ENST00000485689	ENST00000373388		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-intron	ENST00000485689	ENST00000489419		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-intron	ENST00000485689	ENST00000338325		TCGA	LD	GBM	TCGA-02-2486-01A	TMEM234	chr1	32682860	-	CSMD2	chr1	34258127	-
5UTR-5UTR	ENST00000550487	ENST00000553127		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550487	ENST00000321898		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550487	ENST00000552918		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550487	ENST00000547865		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-intron	ENST00000550487	ENST00000552557		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000317943	ENST00000553127		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000317943	ENST00000321898		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000317943	ENST00000552918		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000317943	ENST00000547865		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-intron	ENST00000317943	ENST00000552557		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550654	ENST00000553127		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550654	ENST00000321898		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550654	ENST00000552918		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000550654	ENST00000547865		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-intron	ENST00000550654	ENST00000552557		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000548985	ENST00000553127		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000548985	ENST00000321898		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000548985	ENST00000552918		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-5UTR	ENST00000548985	ENST00000547865		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
5UTR-intron	ENST00000548985	ENST00000552557		TCGA	LD	GBM	TCGA-06-0125-01A	COX14	chr12	50506084	+	SPATS2	chr12	49854553	+
Frame-shit	ENST00000260270	ENST00000355439		TCGA	LD	GBM	TCGA-06-0125-01A	FDX1	chr11	110327771	+	SLC35E2	chr1	1666274	-
Frame-shit	ENST00000260270	ENST00000400924		TCGA	LD	GBM	TCGA-06-0125-01A	FDX1	chr11	110327771	+	SLC35E2	chr1	1666274	-
Frame-shit	ENST00000260270	ENST00000246421		TCGA	LD	GBM	TCGA-06-0125-01A	FDX1	chr11	110327771	+	SLC35E2	chr1	1666274	-
5CDS-5UTR	ENST00000260270	ENST00000475229		TCGA	LD	GBM	TCGA-06-0125-01A	FDX1	chr11	110327771	+	SLC35E2	chr1	1666274	-
5CDS-5UTR	ENST00000430627	ENST00000209728		TCGA	LD	GBM	TCGA-06-0130-01A	CDK12	chr17	37619370	+	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000447079	ENST00000209728		TCGA	LD	GBM	TCGA-06-0130-01A	CDK12	chr17	37619370	+	CDC6	chr17	38445660	+
intron-5UTR	ENST00000559545	ENST00000209728		TCGA	LD	GBM	TCGA-06-0130-01A	CDK12	chr17	37619370	+	CDC6	chr17	38445660	+
In-frame	ENST00000257626	ENST00000248600		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
In-frame	ENST00000257626	ENST00000359697		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
In-frame	ENST00000257626	ENST00000340062		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
In-frame	ENST00000257626	ENST00000360591		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
In-frame	ENST00000257626	ENST00000431581		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
In-frame	ENST00000257626	ENST00000451157		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
5CDS-intron	ENST00000257626	ENST00000460184		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000441833	ENST00000248600		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000441833	ENST00000359697		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000441833	ENST00000340062		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000441833	ENST00000360591		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000441833	ENST00000431581		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000441833	ENST00000451157		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-intron	ENST00000441833	ENST00000460184		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000440473	ENST00000248600		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000440473	ENST00000359697		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000440473	ENST00000340062		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000440473	ENST00000360591		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000440473	ENST00000431581		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000440473	ENST00000451157		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-intron	ENST00000440473	ENST00000460184		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000430584	ENST00000248600		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000430584	ENST00000359697		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000430584	ENST00000340062		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000430584	ENST00000360591		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000430584	ENST00000431581		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000430584	ENST00000451157		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-intron	ENST00000430584	ENST00000460184		TCGA	LD	GBM	TCGA-06-0130-01A	GSAP	chr7	77006165	-	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000543727	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543727	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543727	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543727	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000543727	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000543727	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000543727	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000543727	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000543727	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550559	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550559	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550559	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550559	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000550559	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000550559	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000550559	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000550559	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000550559	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000548851	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000548851	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000548851	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000548851	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000548851	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000548851	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000548851	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000548851	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000548851	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000454289	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000454289	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000454289	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000454289	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000454289	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000454289	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000454289	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000454289	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000454289	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000540550	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000540550	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000540550	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000540550	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000540550	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000540550	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000540550	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000540550	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000540550	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000323833	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000323833	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000323833	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000323833	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000323833	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000323833	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000323833	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000323833	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000323833	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
In-frame	ENST00000350762	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
In-frame	ENST00000350762	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
In-frame	ENST00000350762	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
In-frame	ENST00000350762	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000350762	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000350762	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000350762	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000350762	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000350762	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000497617	ENST00000552285		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000497617	ENST00000315970		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000497617	ENST00000439210		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000497617	ENST00000389146		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000497617	ENST00000413095		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000497617	ENST00000551035		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000497617	ENST00000435406		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000497617	ENST00000257966		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
intron-intron	ENST00000497617	ENST00000389142		TCGA	LD	GBM	TCGA-06-0130-01A	TSFM	chr12	58190168	+	OS9	chr12	58109543	+
Frame-shit	ENST00000250784	ENST00000566620		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
Frame-shit	ENST00000250784	ENST00000268613		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
Frame-shit	ENST00000250784	ENST00000565636		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
Frame-shit	ENST00000250784	ENST00000431540		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
5CDS-intron	ENST00000250784	ENST00000428848		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
5CDS-intron	ENST00000250784	ENST00000567445		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
5CDS-intron	ENST00000250784	ENST00000446376		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
5CDS-3UTR	ENST00000250784	ENST00000569454		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-3CDS	ENST00000477725	ENST00000566620		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-3CDS	ENST00000477725	ENST00000268613		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-3CDS	ENST00000477725	ENST00000565636		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-3CDS	ENST00000477725	ENST00000431540		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-intron	ENST00000477725	ENST00000428848		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-intron	ENST00000477725	ENST00000567445		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-intron	ENST00000477725	ENST00000446376		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
intron-3UTR	ENST00000477725	ENST00000569454		TCGA	LD	GBM	TCGA-06-0132-01A	RPS4Y1	chrY	2712298	+	CDH13	chr16	83158990	+
5UTR-intron	ENST00000395535	ENST00000285279		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000433959		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000545390		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000428648		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000428097		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000418904		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000454227		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000453256		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000427700		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000395535	ENST00000471168		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000285279		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000433959		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000545390		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000428648		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000428097		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000418904		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000454227		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000453256		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000427700		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000352861	ENST00000471168		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000285279		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000433959		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000545390		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000428648		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000428097		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000418904		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000454227		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000453256		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000427700		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5UTR-intron	ENST00000415949	ENST00000471168		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000285279		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000433959		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000545390		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000428648		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000428097		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000418904		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000454227		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000453256		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000427700		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
intron-intron	ENST00000450622	ENST00000471168		TCGA	LD	GBM	TCGA-06-0132-01A	SEC61G	chr7	54826851	-	VOPP1	chr7	55503867	-
5CDS-5UTR	ENST00000548256	ENST00000546373		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000548256	ENST00000551568		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000548256	ENST00000338356		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000548256	ENST00000549691		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000551420	ENST00000546373		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000551420	ENST00000551568		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5UTR-5UTR	ENST00000551420	ENST00000338356		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5UTR-intron	ENST00000551420	ENST00000549691		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000300209	ENST00000546373		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000300209	ENST00000551568		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000300209	ENST00000338356		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000300209	ENST00000549691		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000552307	ENST00000546373		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000552307	ENST00000551568		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000552307	ENST00000338356		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
intron-intron	ENST00000552307	ENST00000549691		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000333012	ENST00000546373		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000333012	ENST00000551568		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000333012	ENST00000338356		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000333012	ENST00000549691		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	CPM	chr12	69326620	-
In-frame	ENST00000548256	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
In-frame	ENST00000548256	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000548256	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000551420	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000551420	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000551420	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
In-frame	ENST00000300209	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
In-frame	ENST00000300209	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000300209	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000552307	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000552307	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000552307	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
In-frame	ENST00000333012	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
In-frame	ENST00000333012	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000333012	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	METTL21B	chr12	58166911	+	LYZ	chr12	69743888	+
In-frame	ENST00000398004	ENST00000552285		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
In-frame	ENST00000398004	ENST00000315970		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
In-frame	ENST00000398004	ENST00000439210		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
In-frame	ENST00000398004	ENST00000389146		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000398004	ENST00000413095		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000398004	ENST00000551035		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000398004	ENST00000435406		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000398004	ENST00000257966		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000398004	ENST00000389142		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000538043	ENST00000552285		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000538043	ENST00000315970		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000538043	ENST00000439210		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000538043	ENST00000389146		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000538043	ENST00000413095		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000538043	ENST00000551035		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000538043	ENST00000435406		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000538043	ENST00000257966		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000538043	ENST00000389142		TCGA	LD	GBM	TCGA-06-0138-01A	SLC35E3	chr12	69145970	+	OS9	chr12	58109543	+
5CDS-5UTR	ENST00000543727	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000543727	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000543727	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000550559	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000550559	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000550559	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000548851	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000548851	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000548851	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000454289	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000454289	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000454289	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000540550	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000540550	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000540550	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000323833	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000323833	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000323833	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000350762	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-5UTR	ENST00000350762	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
5CDS-intron	ENST00000350762	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
3UTR-5UTR	ENST00000497617	ENST00000543426		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
3UTR-5UTR	ENST00000497617	ENST00000228682		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
3UTR-intron	ENST00000497617	ENST00000546141		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58180945	+	GLI1	chr12	57858456	+
In-frame	ENST00000543727	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000543727	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000543727	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000550559	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000550559	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000550559	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000548851	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000548851	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000548851	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000454289	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000454289	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000454289	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000540550	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000540550	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000540550	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000323833	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000323833	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000323833	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000350762	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
In-frame	ENST00000350762	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000350762	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
3UTR-3CDS	ENST00000497617	ENST00000261267		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
3UTR-3CDS	ENST00000497617	ENST00000549690		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
3UTR-3CDS	ENST00000497617	ENST00000548839		TCGA	LD	GBM	TCGA-06-0138-01A	TSFM	chr12	58186856	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000247843	ENST00000262027		TCGA	LD	GBM	TCGA-06-0138-01A	YEATS4	chr12	69764755	+	MARS	chr12	57905481	+
Frame-shit	ENST00000247843	ENST00000315473		TCGA	LD	GBM	TCGA-06-0138-01A	YEATS4	chr12	69764755	+	MARS	chr12	57905481	+
5CDS-3UTR	ENST00000247843	ENST00000447721		TCGA	LD	GBM	TCGA-06-0138-01A	YEATS4	chr12	69764755	+	MARS	chr12	57905481	+
Frame-shit	ENST00000548020	ENST00000262027		TCGA	LD	GBM	TCGA-06-0138-01A	YEATS4	chr12	69764755	+	MARS	chr12	57905481	+
Frame-shit	ENST00000548020	ENST00000315473		TCGA	LD	GBM	TCGA-06-0138-01A	YEATS4	chr12	69764755	+	MARS	chr12	57905481	+
5CDS-3UTR	ENST00000548020	ENST00000447721		TCGA	LD	GBM	TCGA-06-0138-01A	YEATS4	chr12	69764755	+	MARS	chr12	57905481	+
5UTR-3UTR	ENST00000486869	ENST00000263119		TCGA	LD	GBM	TCGA-06-0141-01A	GBAP1	chr1	155186175	-	CABIN1	chr22	24574329	+
5UTR-3UTR	ENST00000486869	ENST00000405822		TCGA	LD	GBM	TCGA-06-0141-01A	GBAP1	chr1	155186175	-	CABIN1	chr22	24574329	+
5UTR-3UTR	ENST00000486869	ENST00000398319		TCGA	LD	GBM	TCGA-06-0141-01A	GBAP1	chr1	155186175	-	CABIN1	chr22	24574329	+
5UTR-3UTR	ENST00000486869	ENST00000337989		TCGA	LD	GBM	TCGA-06-0141-01A	GBAP1	chr1	155186175	-	CABIN1	chr22	24574329	+
5UTR-intron	ENST00000486869	ENST00000485008		TCGA	LD	GBM	TCGA-06-0141-01A	GBAP1	chr1	155186175	-	CABIN1	chr22	24574329	+
5UTR-3CDS	ENST00000373566	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000373566	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000373563	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000373563	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409480	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409480	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409547	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409547	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409196	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409196	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409451	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
5UTR-3CDS	ENST00000409451	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
3UTR-3CDS	ENST00000482666	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
3UTR-3CDS	ENST00000482666	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
intron-3CDS	ENST00000452341	ENST00000304546		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
intron-3CDS	ENST00000452341	ENST00000409941		TCGA	LD	GBM	TCGA-06-0141-01A	GIGYF2	chr2	233562102	+	ECEL1	chr2	233345866	-
3UTR-3UTR	ENST00000251595	ENST00000355852		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000322099		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000461554		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000484633		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000395013		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000395014		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000428823		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000251595	ENST00000471622		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000355852		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000322099		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000461554		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000484633		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000395013		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000395014		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000428823		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
3UTR-3UTR	ENST00000397806	ENST00000471622		TCGA	LD	GBM	TCGA-06-0141-01A	HBA2	chr16	223631	+	PCBP4	chr3	51991704	-
Frame-shit	ENST00000306726	ENST00000368346		TCGA	LD	GBM	TCGA-06-0141-01A	PTPN9	chr15	75871055	-	ASH1L	chr1	155324421	-
Frame-shit	ENST00000306726	ENST00000392403		TCGA	LD	GBM	TCGA-06-0141-01A	PTPN9	chr15	75871055	-	ASH1L	chr1	155324421	-
5CDS-intron	ENST00000306726	ENST00000548830		TCGA	LD	GBM	TCGA-06-0141-01A	PTPN9	chr15	75871055	-	ASH1L	chr1	155324421	-
intron-3CDS	ENST00000564970	ENST00000368346		TCGA	LD	GBM	TCGA-06-0141-01A	PTPN9	chr15	75871055	-	ASH1L	chr1	155324421	-
intron-3CDS	ENST00000564970	ENST00000392403		TCGA	LD	GBM	TCGA-06-0141-01A	PTPN9	chr15	75871055	-	ASH1L	chr1	155324421	-
intron-intron	ENST00000564970	ENST00000548830		TCGA	LD	GBM	TCGA-06-0141-01A	PTPN9	chr15	75871055	-	ASH1L	chr1	155324421	-
5UTR-intron	ENST00000437398	ENST00000567134		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000437398	ENST00000308588		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000437398	ENST00000564644		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000437398	ENST00000371091		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000437398	ENST00000564675		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000314328	ENST00000567134		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000314328	ENST00000308588		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000314328	ENST00000564644		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000314328	ENST00000371091		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000314328	ENST00000564675		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000541492	ENST00000567134		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000541492	ENST00000308588		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000541492	ENST00000564644		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000541492	ENST00000371091		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
5UTR-intron	ENST00000541492	ENST00000564675		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
3UTR-intron	ENST00000416735	ENST00000567134		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
3UTR-intron	ENST00000416735	ENST00000308588		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
3UTR-intron	ENST00000416735	ENST00000564644		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
3UTR-intron	ENST00000416735	ENST00000371091		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
3UTR-intron	ENST00000416735	ENST00000564675		TCGA	LD	GBM	TCGA-06-0141-01A	SPECC1L	chr22	24666951	+	SNUPN	chr15	75918712	-
intron-3CDS	ENST00000323541	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000323541	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000323541	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000323541	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000323541	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-intron	ENST00000323541	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-3CDS	ENST00000454838	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000454838	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000454838	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000454838	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000454838	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-intron	ENST00000454838	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-3CDS	ENST00000449825	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000449825	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000449825	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000449825	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000449825	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-intron	ENST00000449825	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-3CDS	ENST00000323578	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000323578	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000323578	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000323578	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000323578	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-intron	ENST00000323578	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-3CDS	ENST00000429789	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000429789	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000429789	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000429789	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000429789	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-intron	ENST00000429789	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-3CDS	ENST00000336845	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000336845	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000336845	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000336845	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000336845	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-intron	ENST00000336845	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-3CDS	ENST00000528581	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000528581	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000528581	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000528581	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000528581	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-intron	ENST00000528581	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-3CDS	ENST00000436108	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000436108	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000436108	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000436108	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-5UTR	ENST00000436108	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
5UTR-intron	ENST00000436108	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-3CDS	ENST00000526714	ENST00000251166		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000526714	ENST00000539968		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000526714	ENST00000537233		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000526714	ENST00000574025		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-5UTR	ENST00000526714	ENST00000423908		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-intron	ENST00000526714	ENST00000577144		TCGA	LD	GBM	TCGA-06-0156-01A	CHID1	chr11	910775	-	CORO7	chr16	4438632	-
intron-3CDS	ENST00000273009	ENST00000441750		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000273009	ENST00000281513		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000360410	ENST00000441750		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000360410	ENST00000281513		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
In-frame	ENST00000325385	ENST00000441750		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
In-frame	ENST00000325385	ENST00000281513		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000409401	ENST00000441750		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000409401	ENST00000281513		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
In-frame	ENST00000409307	ENST00000441750		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
In-frame	ENST00000409307	ENST00000281513		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000470087	ENST00000441750		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
intron-3CDS	ENST00000470087	ENST00000281513		TCGA	LD	GBM	TCGA-06-0156-01A	DIS3L2	chr2	233164829	+	NBAS	chr2	15523441	-
5UTR-3CDS	ENST00000257290	ENST00000401642		TCGA	LD	GBM	TCGA-06-0156-01A	PDGFRA	chr4	55095582	+	SCFD2	chr4	54140168	-
5UTR-3CDS	ENST00000257290	ENST00000388940		TCGA	LD	GBM	TCGA-06-0156-01A	PDGFRA	chr4	55095582	+	SCFD2	chr4	54140168	-
5UTR-3CDS	ENST00000508170	ENST00000401642		TCGA	LD	GBM	TCGA-06-0156-01A	PDGFRA	chr4	55095582	+	SCFD2	chr4	54140168	-
5UTR-3CDS	ENST00000508170	ENST00000388940		TCGA	LD	GBM	TCGA-06-0156-01A	PDGFRA	chr4	55095582	+	SCFD2	chr4	54140168	-
5CDS-5UTR	ENST00000272203	ENST00000548804		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-intron	ENST00000272203	ENST00000337737		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-intron	ENST00000272203	ENST00000548198		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-intron	ENST00000272203	ENST00000551632		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-5UTR	ENST00000414478	ENST00000548804		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-intron	ENST00000414478	ENST00000337737		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-intron	ENST00000414478	ENST00000548198		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-intron	ENST00000414478	ENST00000551632		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
intron-5UTR	ENST00000485632	ENST00000548804		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
intron-intron	ENST00000485632	ENST00000337737		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
intron-intron	ENST00000485632	ENST00000548198		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
intron-intron	ENST00000485632	ENST00000551632		TCGA	LD	GBM	TCGA-06-0157-01A	PLEKHA6	chr1	204210503	-	DTX3	chr12	57998578	+
5CDS-5UTR	ENST00000262031	ENST00000571688		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000413364		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000339430		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000381810		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000570904		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000571459		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000262031	ENST00000572255		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000576036		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000574763		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000571976		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000262031	ENST00000574703		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000571688		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000413364		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000339430		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000381810		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000570904		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000571459		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-intron	ENST00000552247	ENST00000572255		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000576036		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000574763		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000571976		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000552247	ENST00000574703		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000571688		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000413364		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000339430		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000381810		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000570904		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000571459		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-intron	ENST00000549945	ENST00000572255		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000576036		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000574763		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000571976		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
3UTR-5UTR	ENST00000549945	ENST00000574703		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000571688		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000413364		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000339430		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000381810		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000570904		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000571459		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-intron	ENST00000550726	ENST00000572255		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000576036		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000574763		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000571976		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000550726	ENST00000574703		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000571688		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000413364		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000339430		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000381810		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000570904		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000571459		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-intron	ENST00000542360	ENST00000572255		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000576036		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000574763		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000571976		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000542360	ENST00000574703		TCGA	LD	GBM	TCGA-06-0157-01A	RBMS2	chr12	56915873	+	LITAF	chr16	11650591	-
Frame-shit	ENST00000487990	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
Frame-shit	ENST00000399272	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
5UTR-3CDS	ENST00000489903	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
Frame-shit	ENST00000313806	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
In-frame	ENST00000443408	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
Frame-shit	ENST00000482533	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
In-frame	ENST00000481448	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
Frame-shit	ENST00000381132	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
Frame-shit	ENST00000381135	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
intron-3CDS	ENST00000492600	ENST00000256447		TCGA	LD	GBM	TCGA-06-0158-01A	RCAN1	chr21	35893797	-	CD180	chr5	66481845	-
In-frame	ENST00000546373	ENST00000229179		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000546373	ENST00000378905		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000546373	ENST00000539906		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000546373	ENST00000401003		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000551568	ENST00000229179		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000551568	ENST00000378905		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000551568	ENST00000539906		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000551568	ENST00000401003		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000338356	ENST00000229179		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000338356	ENST00000378905		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000338356	ENST00000539906		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000338356	ENST00000401003		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000549691	ENST00000229179		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000549691	ENST00000378905		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000549691	ENST00000539906		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
intron-intron	ENST00000549691	ENST00000401003		TCGA	LD	GBM	TCGA-06-0174-01A	CPM	chr12	69326458	-	NUP107	chr12	69135593	+
In-frame	ENST00000552285	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000552285	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000552285	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000552285	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000552285	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000315970	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000315970	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000315970	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000315970	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000315970	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000439210	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000439210	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000439210	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000439210	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000439210	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000389146	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000389146	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000389146	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000389146	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000389146	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000413095	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000413095	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000413095	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3UTR	ENST00000413095	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3UTR	ENST00000413095	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000551035	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000551035	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000551035	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3UTR	ENST00000551035	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3UTR	ENST00000551035	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000435406	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000435406	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3CDS	ENST00000435406	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3UTR	ENST00000435406	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-3UTR	ENST00000435406	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000257966	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000257966	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000257966	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000257966	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000257966	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000389142	ENST00000435070		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000389142	ENST00000456847		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
In-frame	ENST00000389142	ENST00000266679		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000389142	ENST00000550987		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000389142	ENST00000551516		TCGA	LD	GBM	TCGA-06-0174-01A	OS9	chr12	58090156	+	CPSF6	chr12	69644909	+
intron-intron	ENST00000413953	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000413953	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000413953	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000413953	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000347140	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000358907	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000402412	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000441731	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
5CDS-intron	ENST00000403821	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000422156		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000540759		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000550465		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
intron-intron	ENST00000546843	ENST00000354947		TCGA	LD	GBM	TCGA-06-0174-01A	R3HDM2	chr12	57682792	-	PIP4K2C	chr12	57989671	+
Frame-shit	ENST00000333942	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000333942	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000333942	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000358365	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000358365	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000358365	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5UTR-3CDS	ENST00000583994	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5UTR-3CDS	ENST00000583994	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5UTR-5UTR	ENST00000583994	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000545287	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000545287	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000545287	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5UTR-3CDS	ENST00000354266	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5UTR-3CDS	ENST00000354266	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5UTR-5UTR	ENST00000354266	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000394692	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000394692	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000394692	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000581094	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000581094	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000581094	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
3UTR-3CDS	ENST00000580976	ENST00000225823		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
3UTR-3CDS	ENST00000580976	ENST00000359872		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
3UTR-5UTR	ENST00000580976	ENST00000448983		TCGA	LD	GBM	TCGA-06-0174-01A	RHOT1	chr17	30469748	+	ASIC2	chr17	31439085	-
Frame-shit	ENST00000396604	ENST00000566621		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396604	ENST00000437989		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396604	ENST00000569302		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396604	ENST00000567389		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396604	ENST00000562877		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396604	ENST00000338183		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396604	ENST00000565792		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396604	ENST00000562489		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396604	ENST00000563167		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396602	ENST00000566621		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396602	ENST00000437989		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396602	ENST00000569302		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396602	ENST00000567389		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396602	ENST00000562877		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396602	ENST00000338183		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396602	ENST00000565792		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396602	ENST00000562489		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396602	ENST00000563167		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000530463	ENST00000566621		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000530463	ENST00000437989		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000530463	ENST00000569302		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000530463	ENST00000567389		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000530463	ENST00000562877		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000530463	ENST00000338183		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000530463	ENST00000565792		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000530463	ENST00000562489		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000530463	ENST00000563167		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396597	ENST00000566621		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396597	ENST00000437989		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000396597	ENST00000569302		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396597	ENST00000567389		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396597	ENST00000562877		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000396597	ENST00000338183		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396597	ENST00000565792		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396597	ENST00000562489		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000396597	ENST00000563167		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000299606	ENST00000566621		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000299606	ENST00000437989		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000299606	ENST00000569302		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000299606	ENST00000567389		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000299606	ENST00000562877		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-5UTR	ENST00000299606	ENST00000338183		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000299606	ENST00000565792		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000299606	ENST00000562489		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
5CDS-intron	ENST00000299606	ENST00000563167		TCGA	LD	GBM	TCGA-06-0174-01A	ZNF143	chr11	9501093	+	C15orf41	chr15	36936479	+
Frame-shit	ENST00000334344	ENST00000550929		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
Frame-shit	ENST00000334344	ENST00000262055		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000334344	ENST00000380123		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000334344	ENST00000418425		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000334344	ENST00000547008		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000334344	ENST00000552739		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000334344	ENST00000548516		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3CDS	ENST00000422737	ENST00000550929		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3CDS	ENST00000422737	ENST00000262055		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3UTR	ENST00000422737	ENST00000380123		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3UTR	ENST00000422737	ENST00000418425		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3UTR	ENST00000422737	ENST00000547008		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3UTR	ENST00000422737	ENST00000552739		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-3UTR	ENST00000422737	ENST00000548516		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000479608	ENST00000550929		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000479608	ENST00000262055		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000479608	ENST00000380123		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000479608	ENST00000418425		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000479608	ENST00000547008		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000479608	ENST00000552739		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000479608	ENST00000548516		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000444670	ENST00000550929		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000444670	ENST00000262055		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000444670	ENST00000380123		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000444670	ENST00000418425		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000444670	ENST00000547008		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000444670	ENST00000552739		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000444670	ENST00000548516		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000457135	ENST00000550929		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000457135	ENST00000262055		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000457135	ENST00000380123		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000457135	ENST00000418425		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000457135	ENST00000547008		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000457135	ENST00000552739		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000457135	ENST00000548516		TCGA	LD	GBM	TCGA-06-0178-01A	ARID2	chr12	46125097	+	LETMD1	chr12	51450133	+
5UTR-5UTR	ENST00000317147	ENST00000258187		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000317147	ENST00000394282		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000317147	ENST00000394279		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000566192		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000568640		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000563022		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000569923		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000356752		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000563799		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000562999		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000317147	ENST00000570248		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000569240	ENST00000258187		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000569240	ENST00000394282		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000569240	ENST00000394279		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000566192		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000568640		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000563022		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000569923		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000356752		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000563799		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000562999		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000569240	ENST00000570248		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000441024	ENST00000258187		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000441024	ENST00000394282		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-5UTR	ENST00000441024	ENST00000394279		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000566192		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000568640		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000563022		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000569923		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000356752		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000563799		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000562999		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
5UTR-intron	ENST00000441024	ENST00000570248		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-5UTR	ENST00000569732	ENST00000258187		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-5UTR	ENST00000569732	ENST00000394282		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-5UTR	ENST00000569732	ENST00000394279		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000566192		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000568640		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000563022		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000569923		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000356752		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000563799		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000562999		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000569732	ENST00000570248		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-5UTR	ENST00000245138	ENST00000258187		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-5UTR	ENST00000245138	ENST00000394282		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-5UTR	ENST00000245138	ENST00000394279		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000566192		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000568640		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000563022		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000569923		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000356752		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000563799		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000562999		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
intron-intron	ENST00000245138	ENST00000570248		TCGA	LD	GBM	TCGA-06-0178-01A	CNOT1	chr16	58663632	-	NDRG4	chr16	58521660	+
Frame-shit	ENST00000448662	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000448662	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000448662	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000448662	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000448662	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000448662	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000448662	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000448662	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000448662	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000431808	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000431808	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000431808	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000431808	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000431808	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000431808	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000431808	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000431808	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000431808	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000284776	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000284776	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000284776	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000284776	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000284776	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000284776	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000284776	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000284776	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000284776	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437304	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437304	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437304	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437304	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437304	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437304	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437304	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437304	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437304	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000319471	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000319471	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000319471	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000319471	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000319471	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000319471	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000319471	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000319471	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000319471	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000449407	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000449407	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000449407	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000449407	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000449407	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000449407	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000449407	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000449407	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000449407	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000355634	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000355634	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000355634	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
Frame-shit	ENST00000355634	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000355634	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000355634	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000355634	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000355634	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000355634	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000393528	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000393528	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000393528	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
In-frame	ENST00000393528	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000393528	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000393528	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000393528	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000393528	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000393528	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000418609	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000418609	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000418609	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000418609	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000418609	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000418609	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000418609	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000418609	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000418609	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000498125	ENST00000552285		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000498125	ENST00000315970		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000498125	ENST00000439210		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000498125	ENST00000389146		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000498125	ENST00000413095		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000498125	ENST00000551035		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000498125	ENST00000435406		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000498125	ENST00000257966		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
intron-intron	ENST00000498125	ENST00000389142		TCGA	LD	GBM	TCGA-06-0178-01A	SORBS2	chr4	186578578	-	OS9	chr12	58109543	+
5CDS-5UTR	ENST00000457580	ENST00000342032		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000457580	ENST00000409146		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-intron	ENST00000457580	ENST00000498609		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000388793	ENST00000342032		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000388793	ENST00000409146		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-intron	ENST00000388793	ENST00000498609		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000432932	ENST00000342032		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000432932	ENST00000409146		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-intron	ENST00000432932	ENST00000498609		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000347433	ENST00000342032		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-5UTR	ENST00000347433	ENST00000409146		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
5CDS-intron	ENST00000347433	ENST00000498609		TCGA	LD	GBM	TCGA-06-0184-01A	SRRT	chr7	100479862	+	PPP1R17	chr7	31732020	+
intron-intron	ENST00000251076	ENST00000361570		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000304494		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000579755		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000579122		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000578845		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000530628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000498124		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000251076	ENST00000498628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000251076	ENST00000494262		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000446177		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000479692		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000497750		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000251076	ENST00000470819		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000361570		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000304494		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000579755		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000579122		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000578845		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000530628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000498124		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000543779	ENST00000498628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000543779	ENST00000494262		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000446177		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000479692		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000497750		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000543779	ENST00000470819		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000361570		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000304494		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000579755		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000579122		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000578845		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000530628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000498124		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000449909	ENST00000498628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000449909	ENST00000494262		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000446177		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000479692		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000497750		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000449909	ENST00000470819		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000361570		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000304494		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000579755		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000579122		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000578845		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000530628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000498124		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000560421	ENST00000498628		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000560421	ENST00000494262		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000446177		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000479692		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000497750		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-intron	ENST00000560421	ENST00000470819		TCGA	LD	GBM	TCGA-06-0190-01A	DMXL2	chr15	51740655	-	CDKN2A	chr9	21995160	-
intron-5UTR	ENST00000397786	ENST00000544305		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000397786	ENST00000374630		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000397786	ENST00000400191		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000397786	ENST00000374632		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-intron	ENST00000397786	ENST00000374627		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-intron	ENST00000397786	ENST00000465676		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000580896	ENST00000544305		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000580896	ENST00000374630		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000580896	ENST00000400191		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-5UTR	ENST00000580896	ENST00000374632		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-intron	ENST00000580896	ENST00000374627		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
intron-intron	ENST00000580896	ENST00000465676		TCGA	LD	GBM	TCGA-06-0190-01A	MED13	chr17	60061945	-	EPHB2	chr1	23037459	+
Frame-shit	ENST00000356607	ENST00000529430		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5CDS-5UTR	ENST00000356607	ENST00000533682		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5CDS-intron	ENST00000356607	ENST00000525602		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5CDS-5UTR	ENST00000356607	ENST00000302731		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5UTR-3CDS	ENST00000538836	ENST00000529430		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5UTR-5UTR	ENST00000538836	ENST00000533682		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5UTR-intron	ENST00000538836	ENST00000525602		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5UTR-5UTR	ENST00000538836	ENST00000302731		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
intron-3CDS	ENST00000492696	ENST00000529430		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
intron-5UTR	ENST00000492696	ENST00000533682		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
intron-intron	ENST00000492696	ENST00000525602		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
intron-5UTR	ENST00000492696	ENST00000302731		TCGA	LD	GBM	TCGA-06-0190-01A	PEX14	chr1	10555378	+	CLP1	chr11	57426927	+
5CDS-5UTR	ENST00000262971	ENST00000287275		TCGA	LD	GBM	TCGA-06-0190-01A	PIAS4	chr19	4029034	+	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000262971	ENST00000532258		TCGA	LD	GBM	TCGA-06-0190-01A	PIAS4	chr19	4029034	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000262971	ENST00000533636		TCGA	LD	GBM	TCGA-06-0190-01A	PIAS4	chr19	4029034	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000596144	ENST00000287275		TCGA	LD	GBM	TCGA-06-0190-01A	PIAS4	chr19	4029034	+	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000596144	ENST00000532258		TCGA	LD	GBM	TCGA-06-0190-01A	PIAS4	chr19	4029034	+	GLYATL2	chr11	58611997	-
intron-intron	ENST00000596144	ENST00000533636		TCGA	LD	GBM	TCGA-06-0190-01A	PIAS4	chr19	4029034	+	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000254323	ENST00000319545		TCGA	LD	GBM	TCGA-06-0190-01A	ZSWIM4	chr19	13906615	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000254323	ENST00000040663		TCGA	LD	GBM	TCGA-06-0190-01A	ZSWIM4	chr19	13906615	+	MRI1	chr19	13879375	+
intron-intron	ENST00000440752	ENST00000319545		TCGA	LD	GBM	TCGA-06-0190-01A	ZSWIM4	chr19	13906615	+	MRI1	chr19	13879375	+
intron-intron	ENST00000440752	ENST00000040663		TCGA	LD	GBM	TCGA-06-0190-01A	ZSWIM4	chr19	13906615	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000397901	ENST00000564878		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000397901	ENST00000393062		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000397901	ENST00000378247		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000397901	ENST00000563972		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000253475	ENST00000564878		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000253475	ENST00000393062		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000253475	ENST00000378247		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000253475	ENST00000563972		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000535997	ENST00000564878		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000535997	ENST00000393062		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000535997	ENST00000378247		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5CDS-intron	ENST00000535997	ENST00000563972		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
intron-intron	ENST00000550102	ENST00000564878		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
intron-intron	ENST00000550102	ENST00000393062		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
intron-intron	ENST00000550102	ENST00000378247		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
intron-intron	ENST00000550102	ENST00000563972		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5UTR-intron	ENST00000547614	ENST00000564878		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5UTR-intron	ENST00000547614	ENST00000393062		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5UTR-intron	ENST00000547614	ENST00000378247		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
5UTR-intron	ENST00000547614	ENST00000563972		TCGA	LD	GBM	TCGA-06-0210-01A	CHMP1A	chr16	89715759	-	SPIRE2	chr16	89924746	+
intron-3CDS	ENST00000488813	ENST00000395891		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
intron-3CDS	ENST00000488813	ENST00000453890		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
intron-intron	ENST00000488813	ENST00000471043		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
intron-3CDS	ENST00000395879	ENST00000395891		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
intron-3CDS	ENST00000395879	ENST00000453890		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
intron-intron	ENST00000395879	ENST00000471043		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-3CDS	ENST00000395880	ENST00000395891		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-3CDS	ENST00000395880	ENST00000453890		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-intron	ENST00000395880	ENST00000471043		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-3CDS	ENST00000310564	ENST00000395891		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-3CDS	ENST00000310564	ENST00000453890		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-intron	ENST00000310564	ENST00000471043		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-3CDS	ENST00000223336	ENST00000395891		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-3CDS	ENST00000223336	ENST00000453890		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5UTR-intron	ENST00000223336	ENST00000471043		TCGA	LD	GBM	TCGA-06-0210-01A	COA1	chr7	43769028	-	HECW1	chr7	43580762	+
5CDS-intron	ENST00000395891	ENST00000488813		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000395891	ENST00000395879		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000395891	ENST00000395880		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000395891	ENST00000310564		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000395891	ENST00000223336		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000453890	ENST00000488813		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000453890	ENST00000395879		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000453890	ENST00000395880		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000453890	ENST00000310564		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
5CDS-intron	ENST00000453890	ENST00000223336		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
intron-intron	ENST00000471043	ENST00000488813		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
intron-intron	ENST00000471043	ENST00000395879		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
intron-intron	ENST00000471043	ENST00000395880		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
intron-intron	ENST00000471043	ENST00000310564		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
intron-intron	ENST00000471043	ENST00000223336		TCGA	LD	GBM	TCGA-06-0210-01A	HECW1	chr7	43519343	+	COA1	chr7	43649094	-
Frame-shit	ENST00000395535	ENST00000455089		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
Frame-shit	ENST00000395535	ENST00000342916		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
Frame-shit	ENST00000395535	ENST00000344576		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
Frame-shit	ENST00000395535	ENST00000420316		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
Frame-shit	ENST00000395535	ENST00000275493		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
Frame-shit	ENST00000395535	ENST00000442591		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000395535	ENST00000463948		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000395535	ENST00000454757		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000352861	ENST00000455089		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000352861	ENST00000342916		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000352861	ENST00000344576		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000352861	ENST00000420316		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000352861	ENST00000275493		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000352861	ENST00000442591		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000352861	ENST00000463948		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000352861	ENST00000454757		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000415949	ENST00000455089		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000415949	ENST00000342916		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000415949	ENST00000344576		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000415949	ENST00000420316		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000415949	ENST00000275493		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000415949	ENST00000442591		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000415949	ENST00000463948		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000415949	ENST00000454757		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000450622	ENST00000455089		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000450622	ENST00000342916		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000450622	ENST00000344576		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000450622	ENST00000420316		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000450622	ENST00000275493		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
In-frame	ENST00000450622	ENST00000442591		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000450622	ENST00000463948		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-intron	ENST00000450622	ENST00000454757		TCGA	LD	GBM	TCGA-06-0211-01A	SEC61G	chr7	54825188	-	EGFR	chr7	55224226	+
5CDS-5UTR	ENST00000377707	ENST00000379992		TCGA	LD	GBM	TCGA-06-0211-01A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000377707	ENST00000493941		TCGA	LD	GBM	TCGA-06-0211-01A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000377707	ENST00000308675		TCGA	LD	GBM	TCGA-06-0211-01A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000377700	ENST00000379992		TCGA	LD	GBM	TCGA-06-0211-01A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000377700	ENST00000493941		TCGA	LD	GBM	TCGA-06-0211-01A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000377700	ENST00000308675		TCGA	LD	GBM	TCGA-06-0211-01A	SHB	chr9	38016008	-	LINGO2	chr9	27950704	-
Frame-shit	ENST00000261254	ENST00000237837		TCGA	LD	GBM	TCGA-06-0221-02A	CCND2	chr12	4398156	+	FGF23	chr12	4481863	-
intron-3CDS	ENST00000541542	ENST00000237837		TCGA	LD	GBM	TCGA-06-0221-02A	CCND2	chr12	4398156	+	FGF23	chr12	4481863	-
Frame-shit	ENST00000436648	ENST00000294016		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
5CDS-5UTR	ENST00000436648	ENST00000571889		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
Frame-shit	ENST00000321919	ENST00000294016		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
5CDS-5UTR	ENST00000321919	ENST00000571889		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
Frame-shit	ENST00000381983	ENST00000294016		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
5CDS-5UTR	ENST00000381983	ENST00000571889		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
Frame-shit	ENST00000591451	ENST00000294016		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
5CDS-5UTR	ENST00000591451	ENST00000571889		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
intron-3CDS	ENST00000586901	ENST00000294016		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
intron-5UTR	ENST00000586901	ENST00000571889		TCGA	LD	GBM	TCGA-06-0221-02A	GLYR1	chr16	4895075	-	ADCY9	chr16	4057559	-
intron-3CDS	ENST00000602550	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602550	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602550	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3CDS	ENST00000438412	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3CDS	ENST00000438412	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3UTR	ENST00000438412	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000444126	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000444126	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000444126	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000449544	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000449544	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000449544	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000454129	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000454129	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000454129	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000454269	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000454269	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000454269	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3CDS	ENST00000426882	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3CDS	ENST00000426882	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3UTR	ENST00000426882	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3CDS	ENST00000412685	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3CDS	ENST00000412685	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5UTR-3UTR	ENST00000412685	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000413358	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000413358	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000413358	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602290	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602290	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602290	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602498	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602498	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602498	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602591	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602591	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602591	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602698	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602698	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602698	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602861	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602861	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602861	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602319	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602319	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602319	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602516	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000602516	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000602516	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000421520	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000421520	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000421520	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000416289	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000416289	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000416289	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000458584	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000458584	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000458584	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000443909	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000443909	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000443909	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000443079	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000443079	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000443079	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000432895	ENST00000353533		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3CDS	ENST00000432895	ENST00000415385		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
intron-3UTR	ENST00000432895	ENST00000581941		TCGA	LD	GBM	TCGA-06-0221-02A	HCG18	chr6	30294131	-	MAP2K4	chr17	12011107	+
5CDS-5UTR	ENST00000353533	ENST00000602550		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000438412		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000444126		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000449544		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000454129		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000454269		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000426882		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000412685		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000413358		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000353533	ENST00000602290		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000602498		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000602591		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000602698		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000602861		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000602319		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000602516		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000421520		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000416289		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000458584		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000443909		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000443079		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000353533	ENST00000432895		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000602550		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000438412		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000444126		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000449544		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000454129		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000454269		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000426882		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000412685		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000413358		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-5UTR	ENST00000415385	ENST00000602290		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000602498		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000602591		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000602698		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000602861		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000602319		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000602516		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000421520		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000416289		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000458584		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000443909		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000443079		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
5CDS-intron	ENST00000415385	ENST00000432895		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000602550		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000438412		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000444126		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000449544		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000454129		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000454269		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000426882		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000412685		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000413358		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-5UTR	ENST00000581941	ENST00000602290		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000602498		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000602591		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000602698		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000602861		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000602319		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000602516		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000421520		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000416289		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000458584		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000443909		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000443079		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
3UTR-intron	ENST00000581941	ENST00000432895		TCGA	LD	GBM	TCGA-06-0221-02A	MAP2K4	chr17	11999011	+	HCG18	chr6	30264014	-
intron-3CDS	ENST00000308624	ENST00000382110		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
intron-3CDS	ENST00000308624	ENST00000324266		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
intron-3UTR	ENST00000308624	ENST00000469147		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
intron-3CDS	ENST00000407292	ENST00000382110		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
intron-3CDS	ENST00000407292	ENST00000324266		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
intron-3UTR	ENST00000407292	ENST00000469147		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
3UTR-3CDS	ENST00000467759	ENST00000382110		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
3UTR-3CDS	ENST00000467759	ENST00000324266		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
3UTR-3UTR	ENST00000467759	ENST00000469147		TCGA	LD	GBM	TCGA-06-0221-02A	SNTG2	chr2	1206365	+	TRAPPC12	chr2	3461392	+
Frame-shit	ENST00000306357	ENST00000572555		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
Frame-shit	ENST00000306357	ENST00000395902		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
Frame-shit	ENST00000306357	ENST00000449552		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
Frame-shit	ENST00000306357	ENST00000571708		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000306357	ENST00000449697		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000306357	ENST00000395671		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000306357	ENST00000395672		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000306357	ENST00000414850		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
In-frame	ENST00000574431	ENST00000572555		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
In-frame	ENST00000574431	ENST00000395902		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
Frame-shit	ENST00000574431	ENST00000449552		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
In-frame	ENST00000574431	ENST00000571708		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000574431	ENST00000449697		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000574431	ENST00000395671		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000574431	ENST00000395672		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
5CDS-intron	ENST00000574431	ENST00000414850		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-3CDS	ENST00000573373	ENST00000572555		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-3CDS	ENST00000573373	ENST00000395902		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-3CDS	ENST00000573373	ENST00000449552		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-3CDS	ENST00000573373	ENST00000571708		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-intron	ENST00000573373	ENST00000449697		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-intron	ENST00000573373	ENST00000395671		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-intron	ENST00000573373	ENST00000395672		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
intron-intron	ENST00000573373	ENST00000414850		TCGA	LD	GBM	TCGA-06-0221-02A	STX8	chr17	9395146	-	TRIM16L	chr17	18638190	+
Frame-shit	ENST00000308448	ENST00000404771		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000372440		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000372443		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000286628		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000286627		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000354353		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000404857		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000308448	ENST00000406533		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000308448	ENST00000484507		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000308448	ENST00000481070		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000308448	ENST00000480683		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000404771		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000372440		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000372443		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000286628		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000286627		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000354353		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000404857		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
In-frame	ENST00000328142	ENST00000406533		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000328142	ENST00000484507		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000328142	ENST00000481070		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000328142	ENST00000480683		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000404771		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000372440		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000372443		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000286628		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000286627		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000354353		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000404857		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000400215	ENST00000406533		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000400215	ENST00000484507		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000400215	ENST00000481070		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000400215	ENST00000480683		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000404771		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000372440		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000372443		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000286628		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000286627		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000354353		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000404857		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
Frame-shit	ENST00000541004	ENST00000406533		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000541004	ENST00000484507		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000541004	ENST00000481070		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000541004	ENST00000480683		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000404771		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000372440		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000372443		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000286628		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000286627		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000354353		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000404857		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000495903	ENST00000406533		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000495903	ENST00000484507		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000495903	ENST00000481070		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000495903	ENST00000480683		TCGA	LD	GBM	TCGA-06-0645-01A	ATAD1	chr10	89574195	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000244769	ENST00000368911		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-5UTR	ENST00000244769	ENST00000323817		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-intron	ENST00000244769	ENST00000413605		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-intron	ENST00000244769	ENST00000497709		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-intron	ENST00000436367	ENST00000368911		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-5UTR	ENST00000436367	ENST00000323817		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-intron	ENST00000436367	ENST00000413605		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5UTR-intron	ENST00000436367	ENST00000497709		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
intron-intron	ENST00000467008	ENST00000368911		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
intron-5UTR	ENST00000467008	ENST00000323817		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
intron-intron	ENST00000467008	ENST00000413605		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
intron-intron	ENST00000467008	ENST00000497709		TCGA	LD	GBM	TCGA-06-0646-01A	ATXN1	chr6	16486203	-	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000261811	ENST00000513454		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5CDS-5UTR	ENST00000261811	ENST00000311337		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5CDS-5UTR	ENST00000261811	ENST00000458112		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5CDS-5UTR	ENST00000261811	ENST00000500692		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5CDS-5UTR	ENST00000261811	ENST00000508177		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5CDS-5UTR	ENST00000261811	ENST00000503794		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5CDS-5UTR	ENST00000261811	ENST00000542860		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000513454		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000311337		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000458112		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000500692		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000508177		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000503794		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
intron-5UTR	ENST00000509789	ENST00000542860		TCGA	LD	GBM	TCGA-06-0649-01B	CYSTM1	chr5	139574237	+	GNPDA1	chr5	141391606	-
5UTR-3CDS	ENST00000564349	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
5UTR-3CDS	ENST00000564349	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
5UTR-3CDS	ENST00000564349	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
5UTR-3CDS	ENST00000564349	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
5UTR-intron	ENST00000564349	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
5UTR-intron	ENST00000564349	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000300005	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000300005	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000300005	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000300005	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000300005	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000300005	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000357967	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000357967	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000357967	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000357967	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000357967	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000357967	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000569729	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000569729	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000569729	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000569729	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000569729	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000569729	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000389345	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000389345	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000389345	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000389345	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000389345	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000389345	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000563117	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000563117	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000563117	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000563117	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000563117	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000563117	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000568251	ENST00000599056		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000568251	ENST00000418871		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000568251	ENST00000429604		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-3CDS	ENST00000568251	ENST00000601421		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000568251	ENST00000355147		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
intron-intron	ENST00000568251	ENST00000599729		TCGA	LD	GBM	TCGA-06-0649-01B	ERI2	chr16	20907630	-	ZNF160	chr19	53573515	-
Frame-shit	ENST00000406486	ENST00000215794		TCGA	LD	GBM	TCGA-06-0649-01B	KIAA1671	chr22	25445331	+	USP18	chr22	18659539	+
Frame-shit	ENST00000358431	ENST00000215794		TCGA	LD	GBM	TCGA-06-0649-01B	KIAA1671	chr22	25445331	+	USP18	chr22	18659539	+
intron-3CDS	ENST00000401395	ENST00000215794		TCGA	LD	GBM	TCGA-06-0649-01B	KIAA1671	chr22	25445331	+	USP18	chr22	18659539	+
5CDS-5UTR	ENST00000393223	ENST00000466152		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000393223	ENST00000371588		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000393223	ENST00000371582		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000393223	ENST00000371583		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000346299	ENST00000466152		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000346299	ENST00000371588		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000346299	ENST00000371582		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000346299	ENST00000371583		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000409459	ENST00000466152		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000409459	ENST00000371588		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000409459	ENST00000371582		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000409459	ENST00000371583		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000352297	ENST00000466152		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000352297	ENST00000371588		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000352297	ENST00000371582		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-5UTR	ENST00000352297	ENST00000371583		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5UTR-5UTR	ENST00000484818	ENST00000466152		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5UTR-5UTR	ENST00000484818	ENST00000371588		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5UTR-5UTR	ENST00000484818	ENST00000371582		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5UTR-5UTR	ENST00000484818	ENST00000371583		TCGA	LD	GBM	TCGA-06-0649-01B	MTMR2	chr11	95598765	-	DPM1	chr20	49551773	-
5CDS-intron	ENST00000254488	ENST00000343849		TCGA	LD	GBM	TCGA-06-0649-01B	SLC6A11	chr3	10916780	+	CAV3	chr3	8883028	+
5CDS-3UTR	ENST00000254488	ENST00000472766		TCGA	LD	GBM	TCGA-06-0649-01B	SLC6A11	chr3	10916780	+	CAV3	chr3	8883028	+
5CDS-intron	ENST00000254488	ENST00000397368		TCGA	LD	GBM	TCGA-06-0649-01B	SLC6A11	chr3	10916780	+	CAV3	chr3	8883028	+
intron-intron	ENST00000454147	ENST00000343849		TCGA	LD	GBM	TCGA-06-0649-01B	SLC6A11	chr3	10916780	+	CAV3	chr3	8883028	+
intron-3UTR	ENST00000454147	ENST00000472766		TCGA	LD	GBM	TCGA-06-0649-01B	SLC6A11	chr3	10916780	+	CAV3	chr3	8883028	+
intron-intron	ENST00000454147	ENST00000397368		TCGA	LD	GBM	TCGA-06-0649-01B	SLC6A11	chr3	10916780	+	CAV3	chr3	8883028	+
Frame-shit	ENST00000228705	ENST00000542245		TCGA	LD	GBM	TCGA-06-0686-01A	PPM1H	chr12	63113951	-	CAPN11	chr6	44134495	+
Frame-shit	ENST00000228705	ENST00000398776		TCGA	LD	GBM	TCGA-06-0686-01A	PPM1H	chr12	63113951	-	CAPN11	chr6	44134495	+
5UTR-3CDS	ENST00000551214	ENST00000542245		TCGA	LD	GBM	TCGA-06-0686-01A	PPM1H	chr12	63113951	-	CAPN11	chr6	44134495	+
5UTR-3CDS	ENST00000551214	ENST00000398776		TCGA	LD	GBM	TCGA-06-0686-01A	PPM1H	chr12	63113951	-	CAPN11	chr6	44134495	+
5UTR-5UTR	ENST00000250559	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000393436	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000341355	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000537460	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000463493	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000450214	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000543393	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000378985	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000540209	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000539091	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000542145	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000543697	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
5UTR-5UTR	ENST00000541216	ENST00000372014		TCGA	LD	GBM	TCGA-06-0686-01A	RAP1B	chr12	69004823	+	MRPL14	chr6	44084366	-
Frame-shit	ENST00000378209	ENST00000302692		TCGA	LD	GBM	TCGA-06-0743-01A	DFFB	chr1	3784617	+	SLC25A33	chr1	9627342	+
intron-3CDS	ENST00000341385	ENST00000302692		TCGA	LD	GBM	TCGA-06-0743-01A	DFFB	chr1	3784617	+	SLC25A33	chr1	9627342	+
intron-3CDS	ENST00000378212	ENST00000302692		TCGA	LD	GBM	TCGA-06-0743-01A	DFFB	chr1	3784617	+	SLC25A33	chr1	9627342	+
Frame-shit	ENST00000338895	ENST00000302692		TCGA	LD	GBM	TCGA-06-0743-01A	DFFB	chr1	3784617	+	SLC25A33	chr1	9627342	+
intron-3CDS	ENST00000379081	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000379081	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
intron-intron	ENST00000379081	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379087	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379087	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000379087	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000379080	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000379080	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
intron-intron	ENST00000379080	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379084	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379084	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000379084	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379089	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379089	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000379089	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000445726	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000445726	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000445726	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000297620	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000297620	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000297620	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379078	ENST00000382865		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
Frame-shit	ENST00000379078	ENST00000511885		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000379078	ENST00000515357		TCGA	LD	GBM	TCGA-06-0744-01A	FAM219A	chr9	34458202	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000367155	ENST00000367282		TCGA	LD	GBM	TCGA-06-0750-01A	KLHDC8A	chr1	205305928	-	GPR37L1	chr1	202096868	+
intron-3CDS	ENST00000367156	ENST00000367282		TCGA	LD	GBM	TCGA-06-0750-01A	KLHDC8A	chr1	205305928	-	GPR37L1	chr1	202096868	+
intron-3CDS	ENST00000539253	ENST00000367282		TCGA	LD	GBM	TCGA-06-0750-01A	KLHDC8A	chr1	205305928	-	GPR37L1	chr1	202096868	+
intron-3CDS	ENST00000537168	ENST00000367282		TCGA	LD	GBM	TCGA-06-0750-01A	KLHDC8A	chr1	205305928	-	GPR37L1	chr1	202096868	+
intron-3CDS	ENST00000460687	ENST00000367282		TCGA	LD	GBM	TCGA-06-0750-01A	KLHDC8A	chr1	205305928	-	GPR37L1	chr1	202096868	+
intron-3CDS	ENST00000606529	ENST00000367282		TCGA	LD	GBM	TCGA-06-0750-01A	KLHDC8A	chr1	205305928	-	GPR37L1	chr1	202096868	+
5UTR-3UTR	ENST00000367176	ENST00000483099		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000367176	ENST00000414487		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000367176	ENST00000367208		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000367177	ENST00000483099		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000367177	ENST00000414487		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000367177	ENST00000367208		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000496057	ENST00000483099		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000496057	ENST00000414487		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
5UTR-3UTR	ENST00000496057	ENST00000367208		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
intron-3UTR	ENST00000367175	ENST00000483099		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
intron-3UTR	ENST00000367175	ENST00000414487		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
intron-3UTR	ENST00000367175	ENST00000367208		TCGA	LD	GBM	TCGA-06-0750-01A	LRRN2	chr1	204654448	-	SNRPE	chr1	203834169	+
intron-3CDS	ENST00000482436	ENST00000254770		TCGA	LD	GBM	TCGA-06-0750-01A	ZNF713	chr7	55974072	+	LANCL2	chr7	55459486	+
intron-intron	ENST00000482436	ENST00000486376		TCGA	LD	GBM	TCGA-06-0750-01A	ZNF713	chr7	55974072	+	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000429591	ENST00000254770		TCGA	LD	GBM	TCGA-06-0750-01A	ZNF713	chr7	55974072	+	LANCL2	chr7	55459486	+
intron-intron	ENST00000429591	ENST00000486376		TCGA	LD	GBM	TCGA-06-0750-01A	ZNF713	chr7	55974072	+	LANCL2	chr7	55459486	+
Frame-shit	ENST00000323060	ENST00000591776		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
Frame-shit	ENST00000323060	ENST00000469257		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
5CDS-intron	ENST00000323060	ENST00000310837		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
Frame-shit	ENST00000263275	ENST00000591776		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
Frame-shit	ENST00000263275	ENST00000469257		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
5CDS-intron	ENST00000263275	ENST00000310837		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
intron-3CDS	ENST00000544371	ENST00000591776		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
intron-3CDS	ENST00000544371	ENST00000469257		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
intron-intron	ENST00000544371	ENST00000310837		TCGA	LD	GBM	TCGA-06-0878-01A	OPA3	chr19	46087881	-	EIF1	chr17	39846030	+
In-frame	ENST00000434748	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
In-frame	ENST00000434748	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
5CDS-intron	ENST00000434748	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
In-frame	ENST00000261673	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
In-frame	ENST00000261673	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
5CDS-intron	ENST00000261673	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
intron-3CDS	ENST00000542061	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
intron-3CDS	ENST00000542061	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
intron-intron	ENST00000542061	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	FBRSL1	chr12	133067447	+	SFSWAP	chr12	132262610	+
Frame-shit	ENST00000507088	ENST00000450662		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
5CDS-intron	ENST00000507088	ENST00000305286		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
Frame-shit	ENST00000225969	ENST00000450662		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
5CDS-intron	ENST00000225969	ENST00000305286		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
In-frame	ENST00000503633	ENST00000450662		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
5CDS-intron	ENST00000503633	ENST00000305286		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
intron-3CDS	ENST00000442592	ENST00000450662		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
intron-intron	ENST00000442592	ENST00000305286		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
Frame-shit	ENST00000511860	ENST00000450662		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
5CDS-intron	ENST00000511860	ENST00000305286		TCGA	LD	GBM	TCGA-06-0882-01A	MRPL27	chr17	48447393	-	EFCAB3	chr17	60455329	+
Frame-shit	ENST00000252804	ENST00000283943		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
Frame-shit	ENST00000252804	ENST00000389045		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
Frame-shit	ENST00000252804	ENST00000389044		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
5CDS-intron	ENST00000252804	ENST00000543084		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
5CDS-intron	ENST00000252804	ENST00000409677		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
intron-3CDS	ENST00000483018	ENST00000283943		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
intron-3CDS	ENST00000483018	ENST00000389045		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
intron-3CDS	ENST00000483018	ENST00000389044		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
intron-intron	ENST00000483018	ENST00000543084		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
intron-intron	ENST00000483018	ENST00000409677		TCGA	LD	GBM	TCGA-06-0882-01A	PXDN	chr2	1651944	-	TRIP12	chr2	230638977	-
In-frame	ENST00000339570	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000339570	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
5CDS-intron	ENST00000339570	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000415380	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000415380	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
5CDS-intron	ENST00000415380	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000261693	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000261693	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
5CDS-intron	ENST00000261693	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000376788	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000376788	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
5CDS-intron	ENST00000376788	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000546215	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
In-frame	ENST00000546215	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
5CDS-intron	ENST00000546215	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000535005	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000535005	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-intron	ENST00000535005	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000541205	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000541205	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-intron	ENST00000541205	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000540495	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000540495	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-intron	ENST00000540495	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000544327	ENST00000261674		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-3CDS	ENST00000544327	ENST00000541286		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
intron-intron	ENST00000544327	ENST00000539506		TCGA	LD	GBM	TCGA-06-0882-01A	SCARB1	chr12	125348141	-	SFSWAP	chr12	132209950	+
Frame-shit	ENST00000383836	ENST00000545121		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
Frame-shit	ENST00000383836	ENST00000357172		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
5CDS-intron	ENST00000383836	ENST00000467362		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
Frame-shit	ENST00000360413	ENST00000545121		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
Frame-shit	ENST00000360413	ENST00000357172		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
5CDS-intron	ENST00000360413	ENST00000467362		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
intron-3CDS	ENST00000433332	ENST00000545121		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
intron-3CDS	ENST00000433332	ENST00000357172		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
intron-intron	ENST00000433332	ENST00000467362		TCGA	LD	GBM	TCGA-06-0882-01A	SRGAP3	chr3	9290569	-	CEPT1	chr1	111717501	+
In-frame	ENST00000283943	ENST00000430249		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-5UTR	ENST00000283943	ENST00000233072		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000283943	ENST00000451903		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000283943	ENST00000497121		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
In-frame	ENST00000389045	ENST00000430249		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-5UTR	ENST00000389045	ENST00000233072		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000389045	ENST00000451903		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000389045	ENST00000497121		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
In-frame	ENST00000389044	ENST00000430249		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-5UTR	ENST00000389044	ENST00000233072		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000389044	ENST00000451903		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000389044	ENST00000497121		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-3CDS	ENST00000543084	ENST00000430249		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-5UTR	ENST00000543084	ENST00000233072		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-intron	ENST00000543084	ENST00000451903		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-intron	ENST00000543084	ENST00000497121		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-3CDS	ENST00000409677	ENST00000430249		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-5UTR	ENST00000409677	ENST00000233072		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-intron	ENST00000409677	ENST00000451903		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-intron	ENST00000409677	ENST00000497121		TCGA	LD	GBM	TCGA-06-0882-01A	TRIP12	chr2	230650473	-	CPS1	chr2	211421443	+
intron-3CDS	ENST00000287461	ENST00000320159		TCGA	LD	GBM	TCGA-06-0882-01A	ZNF689	chr16	30616402	-	ZNF48	chr16	30409176	+
intron-3CDS	ENST00000566673	ENST00000320159		TCGA	LD	GBM	TCGA-06-0882-01A	ZNF689	chr16	30616402	-	ZNF48	chr16	30409176	+
5UTR-3CDS	ENST00000333055	ENST00000261937		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000333055	ENST00000393347		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000333055	ENST00000502649		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-5UTR	ENST00000333055	ENST00000424276		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000307826	ENST00000261937		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000307826	ENST00000393347		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000307826	ENST00000502649		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-5UTR	ENST00000307826	ENST00000424276		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000446023	ENST00000261937		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000446023	ENST00000393347		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000446023	ENST00000502649		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-5UTR	ENST00000446023	ENST00000424276		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000393340	ENST00000261937		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000393340	ENST00000393347		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-3CDS	ENST00000393340	ENST00000502649		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
5UTR-5UTR	ENST00000393340	ENST00000424276		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000427865	ENST00000261937		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000427865	ENST00000393347		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000427865	ENST00000502649		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-5UTR	ENST00000427865	ENST00000424276		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000506708	ENST00000261937		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000506708	ENST00000393347		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000506708	ENST00000502649		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-5UTR	ENST00000506708	ENST00000424276		TCGA	LD	GBM	TCGA-06-1804-01A	MGAT1	chr5	180235648	-	FLT4	chr5	180058778	-
intron-3CDS	ENST00000422156	ENST00000548249		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000422156	ENST00000537439		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000422156	ENST00000434715		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000422156	ENST00000543672		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
intron-5UTR	ENST00000422156	ENST00000551400		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000540759	ENST00000548249		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000540759	ENST00000537439		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000540759	ENST00000434715		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000540759	ENST00000543672		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000540759	ENST00000551400		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000550465	ENST00000548249		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000550465	ENST00000537439		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000550465	ENST00000434715		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000550465	ENST00000543672		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000550465	ENST00000551400		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000354947	ENST00000548249		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000354947	ENST00000537439		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000354947	ENST00000434715		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000354947	ENST00000543672		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000354947	ENST00000551400		TCGA	LD	GBM	TCGA-06-2558-01A	PIP4K2C	chr12	57989814	+	DCTN2	chr12	57929628	-
In-frame	ENST00000322644	ENST00000281419		TCGA	LD	GBM	TCGA-06-2558-01A	POLR2A	chr17	7388176	+	ASAP2	chr2	9419446	+
In-frame	ENST00000322644	ENST00000315273		TCGA	LD	GBM	TCGA-06-2558-01A	POLR2A	chr17	7388176	+	ASAP2	chr2	9419446	+
5CDS-intron	ENST00000322644	ENST00000491413		TCGA	LD	GBM	TCGA-06-2558-01A	POLR2A	chr17	7388176	+	ASAP2	chr2	9419446	+
In-frame	ENST00000572844	ENST00000281419		TCGA	LD	GBM	TCGA-06-2558-01A	POLR2A	chr17	7388176	+	ASAP2	chr2	9419446	+
In-frame	ENST00000572844	ENST00000315273		TCGA	LD	GBM	TCGA-06-2558-01A	POLR2A	chr17	7388176	+	ASAP2	chr2	9419446	+
5CDS-intron	ENST00000572844	ENST00000491413		TCGA	LD	GBM	TCGA-06-2558-01A	POLR2A	chr17	7388176	+	ASAP2	chr2	9419446	+
Frame-shit	ENST00000320442	ENST00000548256		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-5UTR	ENST00000320442	ENST00000551420		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-5UTR	ENST00000320442	ENST00000300209		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-intron	ENST00000320442	ENST00000552307		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-intron	ENST00000320442	ENST00000333012		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
Frame-shit	ENST00000379218	ENST00000548256		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-5UTR	ENST00000379218	ENST00000551420		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-5UTR	ENST00000379218	ENST00000300209		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-intron	ENST00000379218	ENST00000552307		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5CDS-intron	ENST00000379218	ENST00000333012		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
intron-3CDS	ENST00000490243	ENST00000548256		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
intron-5UTR	ENST00000490243	ENST00000551420		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
intron-5UTR	ENST00000490243	ENST00000300209		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
intron-intron	ENST00000490243	ENST00000552307		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
intron-intron	ENST00000490243	ENST00000333012		TCGA	LD	GBM	TCGA-06-2558-01A	SLC26A10	chr12	58014235	+	METTL21B	chr12	58174038	+
5UTR-3CDS	ENST00000380599	ENST00000543245		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
5UTR-3CDS	ENST00000380599	ENST00000356839		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
5UTR-3CDS	ENST00000380599	ENST00000350303		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
5UTR-3UTR	ENST00000380599	ENST00000581562		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
intron-3CDS	ENST00000311403	ENST00000543245		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
intron-3CDS	ENST00000311403	ENST00000356839		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
intron-3CDS	ENST00000311403	ENST00000350303		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
intron-3UTR	ENST00000311403	ENST00000581562		TCGA	LD	GBM	TCGA-06-2558-01A	ZBTB4	chr17	7382775	-	ACADVL	chr17	7123923	+
5CDS-5UTR	ENST00000397097	ENST00000589721		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5CDS-5UTR	ENST00000397097	ENST00000589327		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000397097	ENST00000588606		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000397097	ENST00000586005		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000397097	ENST00000591870		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000397097	ENST00000588500		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000397097	ENST00000586440		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-5UTR	ENST00000343776	ENST00000589721		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-5UTR	ENST00000343776	ENST00000589327		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000343776	ENST00000588606		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000343776	ENST00000586005		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000343776	ENST00000591870		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000343776	ENST00000588500		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000343776	ENST00000586440		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-5UTR	ENST00000608949	ENST00000589721		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-5UTR	ENST00000608949	ENST00000589327		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000608949	ENST00000588606		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000608949	ENST00000586005		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000608949	ENST00000591870		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000608949	ENST00000588500		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
5UTR-intron	ENST00000608949	ENST00000586440		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-5UTR	ENST00000465266	ENST00000589721		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-5UTR	ENST00000465266	ENST00000589327		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-intron	ENST00000465266	ENST00000588606		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-intron	ENST00000465266	ENST00000586005		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-intron	ENST00000465266	ENST00000591870		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-intron	ENST00000465266	ENST00000588500		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
3UTR-intron	ENST00000465266	ENST00000586440		TCGA	LD	GBM	TCGA-06-2558-01A	ZNF678	chr1	227751425	+	SMIM22	chr16	4844953	+
In-frame	ENST00000506198	ENST00000257290		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5CDS-intron	ENST00000506198	ENST00000508170		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
In-frame	ENST00000381334	ENST00000257290		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5CDS-intron	ENST00000381334	ENST00000508170		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5UTR-3CDS	ENST00000542052	ENST00000257290		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5UTR-intron	ENST00000542052	ENST00000508170		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
intron-3CDS	ENST00000514904	ENST00000257290		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
intron-intron	ENST00000514904	ENST00000508170		TCGA	LD	GBM	TCGA-06-2559-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
In-frame	ENST00000543727	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000543727	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000543727	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000543727	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000543727	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
In-frame	ENST00000550559	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000550559	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000550559	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000550559	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000550559	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
In-frame	ENST00000548851	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000548851	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000548851	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000548851	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000548851	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
In-frame	ENST00000454289	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000454289	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000454289	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000454289	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000454289	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
In-frame	ENST00000540550	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000540550	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000540550	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000540550	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000540550	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
In-frame	ENST00000323833	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000323833	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000323833	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000323833	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000323833	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5UTR-3CDS	ENST00000350762	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5UTR-5UTR	ENST00000350762	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5UTR-5UTR	ENST00000350762	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5UTR-3UTR	ENST00000350762	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
5UTR-3UTR	ENST00000350762	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
3UTR-3CDS	ENST00000497617	ENST00000548256		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
3UTR-5UTR	ENST00000497617	ENST00000551420		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
3UTR-5UTR	ENST00000497617	ENST00000300209		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
3UTR-3UTR	ENST00000497617	ENST00000552307		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
3UTR-3UTR	ENST00000497617	ENST00000333012		TCGA	LD	GBM	TCGA-06-2559-01A	TSFM	chr12	58177066	+	METTL21B	chr12	58166800	+
intron-3CDS	ENST00000553221	ENST00000537081		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
intron-3CDS	ENST00000553221	ENST00000257861		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
intron-intron	ENST00000553221	ENST00000550083		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000257910	ENST00000537081		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000257910	ENST00000257861		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
5CDS-intron	ENST00000257910	ENST00000550083		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000547992	ENST00000537081		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000547992	ENST00000257861		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
5CDS-intron	ENST00000547992	ENST00000550083		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000547472	ENST00000537081		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000547472	ENST00000257861		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
5CDS-intron	ENST00000547472	ENST00000550083		TCGA	LD	GBM	TCGA-06-2559-01A	TSPAN31	chr12	58140914	+	AVIL	chr12	58191778	-
Frame-shit	ENST00000409236	ENST00000361999		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000409236	ENST00000355123		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000409236	ENST00000406921		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000409236	ENST00000407704		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000356421	ENST00000361999		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000356421	ENST00000355123		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000356421	ENST00000406921		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000356421	ENST00000407704		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000317233	ENST00000361999		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000317233	ENST00000355123		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000317233	ENST00000406921		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000317233	ENST00000407704		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000409579	ENST00000361999		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
Frame-shit	ENST00000409579	ENST00000355123		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000409579	ENST00000406921		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
5CDS-intron	ENST00000409579	ENST00000407704		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
intron-3CDS	ENST00000483600	ENST00000361999		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
intron-3CDS	ENST00000483600	ENST00000355123		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
intron-intron	ENST00000483600	ENST00000406921		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
intron-intron	ENST00000483600	ENST00000407704		TCGA	LD	GBM	TCGA-06-2561-01A	AFF3	chr2	100289000	-	ITSN2	chr2	24435617	-
In-frame	ENST00000360822	ENST00000306730		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000360822	ENST00000558136		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
In-frame	ENST00000359309	ENST00000306730		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000359309	ENST00000558136		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
In-frame	ENST00000349780	ENST00000306730		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000349780	ENST00000558136		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
In-frame	ENST00000360190	ENST00000306730		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000360190	ENST00000558136		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
intron-3CDS	ENST00000480467	ENST00000306730		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
intron-5UTR	ENST00000480467	ENST00000558136		TCGA	LD	GBM	TCGA-06-2562-01A	CDK5RAP2	chr9	123199573	-	AVEN	chr15	34168196	-
In-frame	ENST00000437099	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000437099	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000437099	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000437099	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
In-frame	ENST00000323816	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000323816	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000323816	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000323816	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
In-frame	ENST00000432992	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000432992	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000432992	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000432992	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
Frame-shit	ENST00000540214	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000540214	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000540214	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000540214	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
In-frame	ENST00000585266	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000585266	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000585266	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000585266	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-3CDS	ENST00000580865	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-5UTR	ENST00000580865	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-5UTR	ENST00000580865	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-5UTR	ENST00000580865	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-3CDS	ENST00000583882	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-5UTR	ENST00000583882	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-5UTR	ENST00000583882	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
intron-5UTR	ENST00000583882	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
Frame-shit	ENST00000542249	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000542249	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000542249	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000542249	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
In-frame	ENST00000396115	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000396115	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000396115	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000396115	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
Frame-shit	ENST00000579158	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000579158	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000579158	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5CDS-5UTR	ENST00000579158	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5UTR-3CDS	ENST00000578655	ENST00000347519		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5UTR-5UTR	ENST00000578655	ENST00000530996		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5UTR-5UTR	ENST00000578655	ENST00000542700		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
5UTR-5UTR	ENST00000578655	ENST00000609024		TCGA	LD	GBM	TCGA-06-2562-01A	GAS7	chr17	9923094	-	CHMP4A	chr14	24681035	-
Frame-shit	ENST00000373566	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000373566	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000373566	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
5CDS-intron	ENST00000373566	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000373563	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000373563	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000373563	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
5CDS-intron	ENST00000373563	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409480	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409480	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409480	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
5CDS-intron	ENST00000409480	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409547	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409547	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409547	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
5CDS-intron	ENST00000409547	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409196	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409196	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409196	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
5CDS-intron	ENST00000409196	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409451	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409451	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
Frame-shit	ENST00000409451	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
5CDS-intron	ENST00000409451	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-3CDS	ENST00000482666	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-3CDS	ENST00000482666	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-3CDS	ENST00000482666	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-intron	ENST00000482666	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-3CDS	ENST00000452341	ENST00000264051		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-3CDS	ENST00000452341	ENST00000373552		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-3CDS	ENST00000452341	ENST00000539537		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
intron-intron	ENST00000452341	ENST00000409079		TCGA	LD	GBM	TCGA-06-2562-01A	GIGYF2	chr2	233621044	+	NGEF	chr2	233750079	-
In-frame	ENST00000336787	ENST00000373996		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
In-frame	ENST00000336787	ENST00000313400		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
In-frame	ENST00000336787	ENST00000361209		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-5UTR	ENST00000336787	ENST00000361477		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000336787	ENST00000288520		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000336787	ENST00000341734		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000336787	ENST00000358637		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
In-frame	ENST00000396307	ENST00000373996		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
In-frame	ENST00000396307	ENST00000313400		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
In-frame	ENST00000396307	ENST00000361209		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-5UTR	ENST00000396307	ENST00000361477		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000396307	ENST00000288520		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000396307	ENST00000341734		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000396307	ENST00000358637		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
Frame-shit	ENST00000564609	ENST00000373996		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
Frame-shit	ENST00000564609	ENST00000313400		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
Frame-shit	ENST00000564609	ENST00000361209		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-5UTR	ENST00000564609	ENST00000361477		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000564609	ENST00000288520		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000564609	ENST00000341734		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000564609	ENST00000358637		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
Frame-shit	ENST00000569493	ENST00000373996		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
Frame-shit	ENST00000569493	ENST00000313400		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
Frame-shit	ENST00000569493	ENST00000361209		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-5UTR	ENST00000569493	ENST00000361477		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000569493	ENST00000288520		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000569493	ENST00000341734		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
5CDS-intron	ENST00000569493	ENST00000358637		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-3CDS	ENST00000561545	ENST00000373996		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-3CDS	ENST00000561545	ENST00000313400		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-3CDS	ENST00000561545	ENST00000361209		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-5UTR	ENST00000561545	ENST00000361477		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-intron	ENST00000561545	ENST00000288520		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-intron	ENST00000561545	ENST00000341734		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-intron	ENST00000561545	ENST00000358637		TCGA	LD	GBM	TCGA-06-2562-01A	RAB27A	chr15	55516087	-	ASTN2	chr9	119626012	-
intron-5UTR	ENST00000545111	ENST00000558772		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000545111	ENST00000219919		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000545111	ENST00000536493		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-intron	ENST00000545111	ENST00000559443		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000394232	ENST00000558772		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000394232	ENST00000219919		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000394232	ENST00000536493		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-intron	ENST00000394232	ENST00000559443		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000557291	ENST00000558772		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000557291	ENST00000219919		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000557291	ENST00000536493		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-intron	ENST00000557291	ENST00000559443		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000330276	ENST00000558772		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000330276	ENST00000219919		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-5UTR	ENST00000330276	ENST00000536493		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
intron-intron	ENST00000330276	ENST00000559443		TCGA	LD	GBM	TCGA-06-2562-01A	SV2B	chr15	91672040	+	AQP9	chr15	58458872	+
5CDS-intron	ENST00000379370	ENST00000449969		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
5CDS-intron	ENST00000379370	ENST00000288766		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
5CDS-intron	ENST00000379370	ENST00000378488		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
5CDS-intron	ENST00000379370	ENST00000419816		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
5CDS-intron	ENST00000379370	ENST00000378486		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
intron-intron	ENST00000477585	ENST00000449969		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
intron-intron	ENST00000477585	ENST00000288766		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
intron-intron	ENST00000477585	ENST00000378488		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
intron-intron	ENST00000477585	ENST00000419816		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
intron-intron	ENST00000477585	ENST00000378486		TCGA	LD	GBM	TCGA-06-2565-01A	AGRN	chr1	957842	+	PLCH2	chr1	2361777	+
intron-3UTR	ENST00000359867	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000359867	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000359867	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000359867	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000396832	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000396832	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000396832	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000396832	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000400206	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000400206	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000400206	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000400206	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000403904	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000403904	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000403904	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000403904	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000413574	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000413574	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000413574	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000413574	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000405675	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000405675	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000405675	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000405675	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000498529	ENST00000396821		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000498529	ENST00000444597		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-3UTR	ENST00000498529	ENST00000381633		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-intron	ENST00000498529	ENST00000432525		TCGA	LD	GBM	TCGA-06-2565-01A	CSNK1E	chr22	38690410	-	DDX17	chr22	38881123	-
intron-5UTR	ENST00000377093	ENST00000356093		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377093	ENST00000398863		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377093	ENST00000343067		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377093	ENST00000349460		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-intron	ENST00000377093	ENST00000373800		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377093	ENST00000347529		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377093	ENST00000373798		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377093	ENST00000373797		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-intron	ENST00000377093	ENST00000460378		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000356093		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000398863		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000343067		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000349460		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-intron	ENST00000263934	ENST00000373800		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000347529		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000373798		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000263934	ENST00000373797		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-intron	ENST00000263934	ENST00000460378		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000356093		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000398863		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000343067		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000349460		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-intron	ENST00000377086	ENST00000373800		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000347529		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000373798		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377086	ENST00000373797		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-intron	ENST00000377086	ENST00000460378		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000356093		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000398863		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000343067		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000349460		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-intron	ENST00000377083	ENST00000373800		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000347529		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000373798		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000377083	ENST00000373797		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-intron	ENST00000377083	ENST00000460378		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000356093		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000398863		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000343067		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000349460		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-intron	ENST00000377081	ENST00000373800		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000347529		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000373798		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-5UTR	ENST00000377081	ENST00000373797		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
5CDS-intron	ENST00000377081	ENST00000460378		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000356093		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000398863		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000343067		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000349460		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-intron	ENST00000465635	ENST00000373800		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000347529		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000373798		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-5UTR	ENST00000465635	ENST00000373797		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
intron-intron	ENST00000465635	ENST00000460378		TCGA	LD	GBM	TCGA-06-2565-01A	KIF1B	chr1	10384120	+	EPB41	chr1	29313943	+
In-frame	ENST00000395535	ENST00000455089		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
In-frame	ENST00000395535	ENST00000342916		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
In-frame	ENST00000395535	ENST00000344576		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
In-frame	ENST00000395535	ENST00000420316		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
In-frame	ENST00000395535	ENST00000275493		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
In-frame	ENST00000395535	ENST00000442591		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000395535	ENST00000463948		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000395535	ENST00000454757		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000352861	ENST00000455089		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000352861	ENST00000342916		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000352861	ENST00000344576		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000352861	ENST00000420316		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000352861	ENST00000275493		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000352861	ENST00000442591		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000352861	ENST00000463948		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000352861	ENST00000454757		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000415949	ENST00000455089		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000415949	ENST00000342916		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000415949	ENST00000344576		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000415949	ENST00000420316		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000415949	ENST00000275493		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000415949	ENST00000442591		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000415949	ENST00000463948		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000415949	ENST00000454757		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000450622	ENST00000455089		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000450622	ENST00000342916		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000450622	ENST00000344576		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000450622	ENST00000420316		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000450622	ENST00000275493		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000450622	ENST00000442591		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000450622	ENST00000463948		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000450622	ENST00000454757		TCGA	LD	GBM	TCGA-06-2565-01A	SEC61G	chr7	54823472	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000550487	ENST00000301149		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000550487	ENST00000547190		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000550487	ENST00000548814		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3CDS	ENST00000317943	ENST00000301149		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000317943	ENST00000547190		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000317943	ENST00000548814		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3CDS	ENST00000550654	ENST00000301149		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000550654	ENST00000547190		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000550654	ENST00000548814		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3CDS	ENST00000548985	ENST00000301149		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000548985	ENST00000547190		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5UTR-3UTR	ENST00000548985	ENST00000548814		TCGA	LD	GBM	TCGA-06-2569-01A	COX14	chr12	50506084	+	GPD1	chr12	50500588	+
5CDS-5UTR	ENST00000159111	ENST00000518864		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-5UTR	ENST00000159111	ENST00000522124		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000159111	ENST00000517473		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000159111	ENST00000276467		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000159111	ENST00000520697		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-5UTR	ENST00000381759	ENST00000518864		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-5UTR	ENST00000381759	ENST00000522124		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000381759	ENST00000517473		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000381759	ENST00000276467		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000381759	ENST00000520697		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-5UTR	ENST00000536461	ENST00000518864		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-5UTR	ENST00000536461	ENST00000522124		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000536461	ENST00000517473		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000536461	ENST00000276467		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
5CDS-intron	ENST00000536461	ENST00000520697		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
3UTR-5UTR	ENST00000592175	ENST00000518864		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
3UTR-5UTR	ENST00000592175	ENST00000522124		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
3UTR-intron	ENST00000592175	ENST00000517473		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
3UTR-intron	ENST00000592175	ENST00000276467		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
3UTR-intron	ENST00000592175	ENST00000520697		TCGA	LD	GBM	TCGA-06-2570-01A	KDM4B	chr19	5047680	+	SNTG1	chr8	51085121	+
In-frame	ENST00000450793	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000450793	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000450793	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000450793	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000538141	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000538141	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000538141	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000538141	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000380180	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000380180	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000380180	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000380180	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000318007	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000318007	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000318007	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000318007	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000437932	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000437932	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000437932	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000437932	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000317968	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000317968	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000317968	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000317968	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5UTR-3CDS	ENST00000542407	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5UTR-intron	ENST00000542407	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5UTR-intron	ENST00000542407	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5UTR-intron	ENST00000542407	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000508216	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000508216	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000508216	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000508216	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000514743	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000514743	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000514743	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000514743	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
intron-3CDS	ENST00000380176	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
intron-intron	ENST00000380176	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
intron-intron	ENST00000380176	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
intron-intron	ENST00000380176	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000359265	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000359265	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000359265	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000359265	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
Frame-shit	ENST00000512274	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000512274	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000512274	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000512274	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
In-frame	ENST00000504489	ENST00000260867		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000504489	ENST00000485812		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000504489	ENST00000374064		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
5CDS-intron	ENST00000504489	ENST00000374065		TCGA	LD	GBM	TCGA-06-2570-01A	PDLIM5	chr4	95376535	+	TIMM23	chr10	51613311	+
intron-3CDS	ENST00000413953	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000413953	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000413953	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000413953	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000413953	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000413953	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-5UTR	ENST00000413953	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3UTR	ENST00000413953	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000347140	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000347140	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000347140	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000347140	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000347140	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000347140	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-5UTR	ENST00000347140	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3UTR	ENST00000347140	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000358907	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000358907	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000358907	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000358907	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000358907	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000358907	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-5UTR	ENST00000358907	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3UTR	ENST00000358907	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000402412	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000402412	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000402412	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000402412	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000402412	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000402412	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-5UTR	ENST00000402412	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
5UTR-3UTR	ENST00000402412	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000441731	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000441731	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000441731	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000441731	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000441731	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000441731	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-5UTR	ENST00000441731	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3UTR	ENST00000441731	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000403821	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000403821	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000403821	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000403821	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000403821	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000403821	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-5UTR	ENST00000403821	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3UTR	ENST00000403821	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000546843	ENST00000543727		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000546843	ENST00000550559		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000546843	ENST00000548851		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000546843	ENST00000454289		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000546843	ENST00000540550		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3CDS	ENST00000546843	ENST00000323833		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-5UTR	ENST00000546843	ENST00000350762		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
intron-3UTR	ENST00000546843	ENST00000497617		TCGA	LD	GBM	TCGA-06-2570-01A	R3HDM2	chr12	57789532	-	TSFM	chr12	58176893	+
Frame-shit	ENST00000354179	ENST00000366898		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000354179	ENST00000366897		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000354179	ENST00000366896		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000354179	ENST00000366894		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000354179	ENST00000338468		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000354179	ENST00000366892		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000439151	ENST00000366898		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000439151	ENST00000366897		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000439151	ENST00000366896		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000439151	ENST00000366894		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000439151	ENST00000338468		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000439151	ENST00000366892		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000347982	ENST00000366898		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000347982	ENST00000366897		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000347982	ENST00000366896		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000347982	ENST00000366894		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000347982	ENST00000338468		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000347982	ENST00000366892		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000361032	ENST00000366898		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000361032	ENST00000366897		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000361032	ENST00000366896		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000361032	ENST00000366894		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000361032	ENST00000338468		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
Frame-shit	ENST00000361032	ENST00000366892		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
intron-3CDS	ENST00000511258	ENST00000366898		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
intron-3CDS	ENST00000511258	ENST00000366897		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
intron-3CDS	ENST00000511258	ENST00000366896		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
intron-3CDS	ENST00000511258	ENST00000366894		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
intron-3CDS	ENST00000511258	ENST00000338468		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
intron-3CDS	ENST00000511258	ENST00000366892		TCGA	LD	GBM	TCGA-06-5408-01A	NSD1	chr5	176675325	+	PARK2	chr6	161990448	-
5CDS-5UTR	ENST00000371477	ENST00000442253		TCGA	LD	GBM	TCGA-06-5412-01A	CDC5L	chr6	44376369	+	PAQR8	chr6	52267960	+
5CDS-5UTR	ENST00000371477	ENST00000360726		TCGA	LD	GBM	TCGA-06-5412-01A	CDC5L	chr6	44376369	+	PAQR8	chr6	52267960	+
5CDS-intron	ENST00000550916	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000550916	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000550916	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000550916	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000378689	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000378689	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000378689	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000378689	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000435775	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000435775	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000435775	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000435775	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5UTR-intron	ENST00000378692	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5UTR-intron	ENST00000378692	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5UTR-intron	ENST00000378692	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5UTR-intron	ENST00000378692	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000320460	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000320460	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000320460	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000320460	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000547164	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000547164	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000547164	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
5CDS-intron	ENST00000547164	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
intron-intron	ENST00000441218	ENST00000550187		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
intron-intron	ENST00000441218	ENST00000547157		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
intron-intron	ENST00000441218	ENST00000327772		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
intron-intron	ENST00000441218	ENST00000547986		TCGA	LD	GBM	TCGA-06-5412-01A	GLIPR1L2	chr12	75785130	+	NDUFA12	chr12	95291086	-
intron-3CDS	ENST00000591040	ENST00000426216		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-3CDS	ENST00000591040	ENST00000307671		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000591040	ENST00000586722		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000591040	ENST00000591464		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000591040	ENST00000458297		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000591040	ENST00000543761		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-3CDS	ENST00000592416	ENST00000426216		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-3CDS	ENST00000592416	ENST00000307671		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000592416	ENST00000586722		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000592416	ENST00000591464		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000592416	ENST00000458297		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
intron-intron	ENST00000592416	ENST00000543761		TCGA	LD	GBM	TCGA-06-5413-01A	MEX3C	chr18	48722937	-	ATP9B	chr18	77037054	+
Frame-shit	ENST00000421109	ENST00000442544		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000421109	ENST00000412726		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000421109	ENST00000581580		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
5CDS-3UTR	ENST00000421109	ENST00000580146		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000394166	ENST00000442544		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000394166	ENST00000412726		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000394166	ENST00000581580		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
5CDS-3UTR	ENST00000394166	ENST00000580146		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000394171	ENST00000442544		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000394171	ENST00000412726		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000394171	ENST00000581580		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
5CDS-3UTR	ENST00000394171	ENST00000580146		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000453270	ENST00000442544		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000453270	ENST00000412726		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000453270	ENST00000581580		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
5CDS-3UTR	ENST00000453270	ENST00000580146		TCGA	LD	GBM	TCGA-06-5413-01A	NR2F2	chr15	96877832	+	DCC	chr18	50592416	+
Frame-shit	ENST00000553525	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000553525	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000553525	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000553525	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000555571	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000555571	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000555571	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000555571	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000553530	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000553530	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000553530	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000553530	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000556437	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000556437	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000556437	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000556437	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000355512	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000355512	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000355512	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000355512	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000406236	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000406236	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000406236	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000406236	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000404301	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000404301	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000404301	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000404301	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000407322	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000407322	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000407322	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000407322	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000402788	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000402788	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000402788	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000402788	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000343854	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000343854	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
Frame-shit	ENST00000343854	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
5CDS-intron	ENST00000343854	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000434263	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000434263	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000434263	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-intron	ENST00000434263	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000554782	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000554782	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000554782	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-intron	ENST00000554782	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000553690	ENST00000280979		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000553690	ENST00000557354		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-3CDS	ENST00000553690	ENST00000557272		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
intron-intron	ENST00000553690	ENST00000554449		TCGA	LD	GBM	TCGA-06-5413-01A	RGS6	chr14	72818902	+	AKAP6	chr14	33046326	+
In-frame	ENST00000368491	ENST00000368508		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
In-frame	ENST00000368491	ENST00000368507		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
Frame-shit	ENST00000368488	ENST00000368508		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
Frame-shit	ENST00000368488	ENST00000368507		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000360290	ENST00000368508		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000360290	ENST00000368507		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000392500	ENST00000368508		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000392500	ENST00000368507		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000419517	ENST00000368508		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000419517	ENST00000368507		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000472713	ENST00000368508		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
intron-3CDS	ENST00000472713	ENST00000368507		TCGA	LD	GBM	TCGA-06-5418-01A	CEP85L	chr6	118802942	-	ROS1	chr6	117641193	-
5CDS-intron	ENST00000350721	ENST00000403050		TCGA	LD	GBM	TCGA-06-5856-01A	ATR	chr3	142284963	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000350721	ENST00000445996		TCGA	LD	GBM	TCGA-06-5856-01A	ATR	chr3	142284963	-	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000350721	ENST00000469407		TCGA	LD	GBM	TCGA-06-5856-01A	ATR	chr3	142284963	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000383101	ENST00000403050		TCGA	LD	GBM	TCGA-06-5856-01A	ATR	chr3	142284963	-	PHF14	chr7	11150977	+
5CDS-intron	ENST00000383101	ENST00000445996		TCGA	LD	GBM	TCGA-06-5856-01A	ATR	chr3	142284963	-	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000383101	ENST00000469407		TCGA	LD	GBM	TCGA-06-5856-01A	ATR	chr3	142284963	-	PHF14	chr7	11150977	+
Frame-shit	ENST00000261318	ENST00000281938		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000261318	ENST00000542496		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	HSPB8	chr12	119624830	+
intron-3CDS	ENST00000548356	ENST00000281938		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	HSPB8	chr12	119624830	+
intron-3UTR	ENST00000548356	ENST00000542496		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	HSPB8	chr12	119624830	+
Frame-shit	ENST00000536380	ENST00000281938		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000536380	ENST00000542496		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000261318	ENST00000267260		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119600476	+
5CDS-intron	ENST00000261318	ENST00000537597		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119600476	+
intron-3UTR	ENST00000548356	ENST00000267260		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119600476	+
intron-intron	ENST00000548356	ENST00000537597		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119600476	+
5CDS-3UTR	ENST00000536380	ENST00000267260		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119600476	+
5CDS-intron	ENST00000536380	ENST00000537597		TCGA	LD	GBM	TCGA-06-5856-01A	C12orf49	chr12	117175595	-	SRRM4	chr12	119600476	+
In-frame	ENST00000229195	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000229195	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000229195	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000229195	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
5CDS-intron	ENST00000229195	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
5CDS-intron	ENST00000229195	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000418359	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000418359	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000418359	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
In-frame	ENST00000418359	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
5CDS-intron	ENST00000418359	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
5CDS-intron	ENST00000418359	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000548230	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000548230	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000548230	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000548230	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-intron	ENST00000548230	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-intron	ENST00000548230	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000551483	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000551483	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000551483	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-3CDS	ENST00000551483	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-intron	ENST00000551483	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
intron-intron	ENST00000551483	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	CNOT2	chr12	70672054	+	ERBB3	chr12	56493958	+
5CDS-5UTR	ENST00000450485	ENST00000548553		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
5CDS-5UTR	ENST00000450485	ENST00000332160		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
5CDS-5UTR	ENST00000333479	ENST00000548553		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
5CDS-5UTR	ENST00000333479	ENST00000332160		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000545065	ENST00000548553		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000545065	ENST00000332160		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000537348	ENST00000548553		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000537348	ENST00000332160		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000436959	ENST00000548553		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000436959	ENST00000332160		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000534995	ENST00000548553		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000534995	ENST00000332160		TCGA	LD	GBM	TCGA-06-5856-01A	KNTC1	chr12	123024301	+	METTL7A	chr12	51318820	+
intron-5UTR	ENST00000576906	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000576906	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000576906	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000576906	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000407558	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000407558	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000407558	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000608722	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000608722	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000608722	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000424546	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000424546	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000424546	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000573580	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000573580	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000573580	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000421765	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000421765	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000421765	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000610180	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000610180	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000610180	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000608993	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000608993	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000608993	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000360862	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000360862	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000360862	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000414063	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000414063	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000414063	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-intron	ENST00000570551	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-5UTR	ENST00000570551	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
3UTR-intron	ENST00000570551	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000572942	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000572942	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000572942	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000576916	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000576916	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000576916	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000575076	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000575076	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000575076	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000577013	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000577013	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000577013	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000570819	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-5UTR	ENST00000570819	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5UTR-intron	ENST00000570819	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000325568		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000534507		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000572584	ENST00000531965		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000396887		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000529699		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000526464		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000440815		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000529550		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000551122		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000525643		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000528163		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000530890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000444393		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000533097		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000008180		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000396890		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000548652		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000530538		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000549213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000552936		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000548476		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000552664		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000552356		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000551513		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-5UTR	ENST00000572584	ENST00000382213		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
intron-intron	ENST00000572584	ENST00000548246		TCGA	LD	GBM	TCGA-06-5856-01A	NAA60	chr16	3508181	+	IL32	chr16	3115785	+
5CDS-intron	ENST00000304301	ENST00000382668		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000304301	ENST00000382666		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000304301	ENST00000427358		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000586252	ENST00000382668		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000586252	ENST00000382666		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000586252	ENST00000427358		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000586536	ENST00000382668		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000586536	ENST00000382666		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000586536	ENST00000427358		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000405142	ENST00000382668		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000405142	ENST00000382666		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000405142	ENST00000427358		TCGA	LD	GBM	TCGA-06-5856-01A	NUDT16L1	chr16	4744239	+	FAHD1	chr16	1888017	+
Frame-shit	ENST00000247833	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000247833	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000247833	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000247833	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000247833	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000247833	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
Frame-shit	ENST00000378815	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000378815	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000378815	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000378815	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000378815	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000378815	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5UTR-3CDS	ENST00000325555	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000325555	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5UTR-5UTR	ENST00000325555	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000325555	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000325555	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000325555	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
Frame-shit	ENST00000483530	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000483530	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000483530	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000483530	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000483530	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000483530	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
Frame-shit	ENST00000550536	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000550536	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000550536	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000550536	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000550536	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000550536	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
Frame-shit	ENST00000362025	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000362025	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000362025	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000362025	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000362025	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000362025	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-3CDS	ENST00000551641	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000551641	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-5UTR	ENST00000551641	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000551641	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000551641	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000551641	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-3CDS	ENST00000553099	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000553099	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-5UTR	ENST00000553099	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000553099	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000553099	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000553099	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-3CDS	ENST00000550847	ENST00000267101		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000550847	ENST00000450146		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-5UTR	ENST00000550847	ENST00000415288		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000550847	ENST00000553131		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000550847	ENST00000411731		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
intron-intron	ENST00000550847	ENST00000549832		TCGA	LD	GBM	TCGA-06-5856-01A	RAB3IP	chr12	70150443	+	ERBB3	chr12	56477535	+
In-frame	ENST00000439268	ENST00000312511		TCGA	LD	GBM	TCGA-06-5856-01A	RANBP3	chr19	5927979	-	PRM1	chr16	11375087	-
In-frame	ENST00000340578	ENST00000312511		TCGA	LD	GBM	TCGA-06-5856-01A	RANBP3	chr19	5927979	-	PRM1	chr16	11375087	-
In-frame	ENST00000541471	ENST00000312511		TCGA	LD	GBM	TCGA-06-5856-01A	RANBP3	chr19	5927979	-	PRM1	chr16	11375087	-
In-frame	ENST00000591092	ENST00000312511		TCGA	LD	GBM	TCGA-06-5856-01A	RANBP3	chr19	5927979	-	PRM1	chr16	11375087	-
In-frame	ENST00000034275	ENST00000312511		TCGA	LD	GBM	TCGA-06-5856-01A	RANBP3	chr19	5927979	-	PRM1	chr16	11375087	-
intron-3CDS	ENST00000591124	ENST00000312511		TCGA	LD	GBM	TCGA-06-5856-01A	RANBP3	chr19	5927979	-	PRM1	chr16	11375087	-
Frame-shit	ENST00000546591	ENST00000454682		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000546591	ENST00000550952		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000546591	ENST00000356769		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000546591	ENST00000552540		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000546591	ENST00000393891		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000546591	ENST00000548563		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000546591	ENST00000546392		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000546591	ENST00000551793		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000501597	ENST00000454682		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000501597	ENST00000550952		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000501597	ENST00000356769		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000501597	ENST00000552540		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000501597	ENST00000393891		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000501597	ENST00000548563		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000501597	ENST00000546392		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000501597	ENST00000551793		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-3CDS	ENST00000552314	ENST00000454682		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-3CDS	ENST00000552314	ENST00000550952		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-3CDS	ENST00000552314	ENST00000356769		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-3CDS	ENST00000552314	ENST00000552540		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-3CDS	ENST00000552314	ENST00000393891		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-5UTR	ENST00000552314	ENST00000548563		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-5UTR	ENST00000552314	ENST00000546392		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
3UTR-5UTR	ENST00000552314	ENST00000551793		TCGA	LD	GBM	TCGA-06-5856-01A	RPL41	chr12	56510995	+	NACA	chr12	57108471	-
Frame-shit	ENST00000604567	ENST00000377069		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000604567	ENST00000542973		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000604567	ENST00000377071		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000604567	ENST00000536437		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000604567	ENST00000538046		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000604567	ENST00000543852		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
Frame-shit	ENST00000542440	ENST00000377069		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000542440	ENST00000542973		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000542440	ENST00000377071		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000542440	ENST00000536437		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000542440	ENST00000538046		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000542440	ENST00000543852		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
Frame-shit	ENST00000267197	ENST00000377069		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000267197	ENST00000542973		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000267197	ENST00000377071		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000267197	ENST00000536437		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000267197	ENST00000538046		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-intron	ENST00000267197	ENST00000543852		TCGA	LD	GBM	TCGA-06-5856-01A	SETD1B	chr12	122248741	+	KDM2B	chr12	122013764	-
5CDS-5UTR	ENST00000543473	ENST00000257904		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000543473	ENST00000312990		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-intron	ENST00000543473	ENST00000549606		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000543473	ENST00000540325		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000543473	ENST00000551888		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000397564	ENST00000257904		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000397564	ENST00000312990		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-intron	ENST00000397564	ENST00000549606		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000397564	ENST00000540325		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
5CDS-5UTR	ENST00000397564	ENST00000551888		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000541280	ENST00000257904		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000541280	ENST00000312990		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
intron-intron	ENST00000541280	ENST00000549606		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000541280	ENST00000540325		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000541280	ENST00000551888		TCGA	LD	GBM	TCGA-06-5856-01A	SUDS3	chr12	118829087	+	CDK4	chr12	58145519	-
In-frame	ENST00000449592	ENST00000537081		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
In-frame	ENST00000449592	ENST00000257861		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
5CDS-intron	ENST00000449592	ENST00000550083		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000540377	ENST00000537081		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000540377	ENST00000257861		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
intron-intron	ENST00000540377	ENST00000550083		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000538055	ENST00000537081		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000538055	ENST00000257861		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
intron-intron	ENST00000538055	ENST00000550083		TCGA	LD	GBM	TCGA-06-5856-01A	TMEM120B	chr12	122150870	+	AVIL	chr12	58193703	-
In-frame	ENST00000543727	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
In-frame	ENST00000550559	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
In-frame	ENST00000548851	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
In-frame	ENST00000454289	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
In-frame	ENST00000540550	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
In-frame	ENST00000323833	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
In-frame	ENST00000350762	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
3UTR-3CDS	ENST00000497617	ENST00000229135		TCGA	LD	GBM	TCGA-06-5856-01A	TSFM	chr12	58180074	+	IFNG	chr12	68549145	-
5UTR-3CDS	ENST00000304735	ENST00000550418		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-3CDS	ENST00000304735	ENST00000553186		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-3CDS	ENST00000304735	ENST00000547372		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-3CDS	ENST00000304735	ENST00000422070		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-3CDS	ENST00000304735	ENST00000535565		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000547427		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000552089		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000547338		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000436368		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000311745		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000355637		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-intron	ENST00000304735	ENST00000340209		TCGA	LD	GBM	TCGA-06-5856-01A	VASN	chr16	4421994	+	RBFOX1	chr16	7759058	+
5UTR-3CDS	ENST00000543426	ENST00000548249		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000543426	ENST00000537439		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000543426	ENST00000434715		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000543426	ENST00000543672		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-5UTR	ENST00000543426	ENST00000551400		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000228682	ENST00000548249		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000228682	ENST00000537439		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000228682	ENST00000434715		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000228682	ENST00000543672		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-5UTR	ENST00000228682	ENST00000551400		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000546141	ENST00000548249		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000546141	ENST00000537439		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000546141	ENST00000434715		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000546141	ENST00000543672		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
5UTR-5UTR	ENST00000546141	ENST00000551400		TCGA	LD	GBM	TCGA-06-5859-01A	GLI1	chr12	57853984	+	DCTN2	chr12	57929628	-
intron-intron	ENST00000413953	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000413953	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000413953	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000413953	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000413953	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000413953	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000413953	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000413953	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000347140	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-3UTR	ENST00000347140	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000358907	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000358907	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-intron	ENST00000402412	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
5UTR-3UTR	ENST00000402412	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000441731	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000441731	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000403821	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000403821	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000543727		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000550559		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000548851		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000454289		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000540550		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000323833		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-intron	ENST00000546843	ENST00000350762		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000546843	ENST00000497617		TCGA	LD	GBM	TCGA-06-5859-01A	R3HDM2	chr12	57824503	-	TSFM	chr12	58189960	+
intron-3CDS	ENST00000452201	ENST00000587244		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
intron-intron	ENST00000452201	ENST00000299721		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
In-frame	ENST00000398417	ENST00000587244		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
5CDS-intron	ENST00000398417	ENST00000299721		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
In-frame	ENST00000342988	ENST00000587244		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
5CDS-intron	ENST00000342988	ENST00000299721		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
intron-3CDS	ENST00000588745	ENST00000587244		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
intron-intron	ENST00000588745	ENST00000299721		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
intron-3CDS	ENST00000586253	ENST00000587244		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
intron-intron	ENST00000586253	ENST00000299721		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	CPLX4	chr18	56943966	-
intron-3CDS	ENST00000452201	ENST00000256852		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
intron-3CDS	ENST00000452201	ENST00000334889		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
Frame-shit	ENST00000398417	ENST00000256852		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
Frame-shit	ENST00000398417	ENST00000334889		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
Frame-shit	ENST00000342988	ENST00000256852		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
Frame-shit	ENST00000342988	ENST00000334889		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
intron-3CDS	ENST00000588745	ENST00000256852		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
intron-3CDS	ENST00000588745	ENST00000334889		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
intron-3CDS	ENST00000586253	ENST00000256852		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
intron-3CDS	ENST00000586253	ENST00000334889		TCGA	LD	GBM	TCGA-06-5859-01A	SMAD4	chr18	48586286	+	RAX	chr18	56936733	-
In-frame	ENST00000535334	ENST00000357674		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000314062		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000346964		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000419354		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000452595		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000422288		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000448528		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000443183		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000450955		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000535334	ENST00000392382		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
5CDS-intron	ENST00000535334	ENST00000485409		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000357674		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000314062		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000346964		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000419354		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000452595		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000422288		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000448528		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000443183		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000450955		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000303097	ENST00000392382		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-intron	ENST00000303097	ENST00000485409		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000357674		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000314062		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000346964		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000419354		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000452595		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000422288		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000448528		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000443183		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000450955		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000394222	ENST00000392382		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
5CDS-intron	ENST00000394222	ENST00000485409		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000357674		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000314062		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000346964		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000419354		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000452595		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000422288		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000448528		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000443183		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000450955		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000539730	ENST00000392382		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-intron	ENST00000539730	ENST00000485409		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000357674		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000314062		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000346964		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000419354		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000452595		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000422288		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000448528		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000443183		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000450955		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
In-frame	ENST00000471138	ENST00000392382		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
5CDS-intron	ENST00000471138	ENST00000485409		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000357674		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000314062		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000346964		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000419354		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000452595		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000422288		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000448528		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000443183		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000450955		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-3CDS	ENST00000486562	ENST00000392382		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
intron-intron	ENST00000486562	ENST00000485409		TCGA	LD	GBM	TCGA-06-A5U1-01A	ARL13B	chr3	93722752	+	DLG1	chr3	196812627	-
5CDS-5UTR	ENST00000372484	ENST00000488498		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000372484	ENST00000368243		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000354880	ENST00000488498		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000354880	ENST00000368243		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000191018	ENST00000488498		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000191018	ENST00000368243		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000372459	ENST00000488498		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000372459	ENST00000368243		TCGA	LD	GBM	TCGA-06-A6S0-01A	CTSA	chr20	44523772	+	C1orf61	chr1	156374393	-
5UTR-3CDS	ENST00000378566	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000603301	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000488109	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000322813	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000605244	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000378561	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000378557	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
5UTR-3CDS	ENST00000378554	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
5UTR-3CDS	ENST00000605392	ENST00000263228		TCGA	LD	GBM	TCGA-06-A6S0-01A	FAM214B	chr9	35115668	-	UBE2R2	chr9	33886879	+
5UTR-3UTR	ENST00000338586	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000338586	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000338515	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000338515	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367171	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367171	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367169	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367169	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000539706	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000539706	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000339876	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000339876	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367170	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367170	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000360049	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000360049	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000367172	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000367172	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000403080	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000403080	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000404076	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000404076	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-3UTR	ENST00000401399	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
5UTR-5UTR	ENST00000401399	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000404907	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000404907	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000513543	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000513543	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000495396	ENST00000367203		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000495396	ENST00000367204		TCGA	LD	GBM	TCGA-06-A6S0-01A	NFASC	chr1	204889868	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000548589	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
intron-5UTR	ENST00000548589	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
intron-5UTR	ENST00000548589	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
intron-5UTR	ENST00000548589	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
intron-5UTR	ENST00000548589	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000552699	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000552699	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000552699	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000552699	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000552699	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000267115	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000267115	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000267115	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000267115	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000267115	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000549385	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000549385	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000549385	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000549385	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000549385	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000423828	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000423828	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000423828	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000423828	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000423828	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000395006	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000395006	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000395006	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000395006	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000395006	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000547798	ENST00000331872		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000547798	ENST00000417584		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000547798	ENST00000311223		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000547798	ENST00000491322		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
5CDS-5UTR	ENST00000547798	ENST00000339526		TCGA	LD	GBM	TCGA-06-A6S0-01A	TMBIM6	chr12	50152545	+	GLUL	chr1	182357885	-
In-frame	ENST00000285279	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
5CDS-intron	ENST00000285279	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000433959	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000433959	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000545390	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000545390	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000428648	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000428648	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000428097	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000428097	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000418904	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000418904	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000454227	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000454227	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000453256	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000453256	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
5UTR-3CDS	ENST00000427700	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
5UTR-intron	ENST00000427700	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-3CDS	ENST00000471168	ENST00000254770		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
intron-intron	ENST00000471168	ENST00000486376		TCGA	LD	GBM	TCGA-06-A6S0-01A	VOPP1	chr7	55639964	-	LANCL2	chr7	55459486	+
Frame-shit	ENST00000361570	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
Frame-shit	ENST00000361570	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
5CDS-intron	ENST00000361570	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000304494	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000304494	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000304494	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
Frame-shit	ENST00000579755	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
Frame-shit	ENST00000579755	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
5CDS-intron	ENST00000579755	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000579122	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000579122	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000579122	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000578845	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000578845	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000578845	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
Frame-shit	ENST00000530628	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
Frame-shit	ENST00000530628	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
5CDS-intron	ENST00000530628	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000498124	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000498124	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000498124	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000498628	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000498628	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000498628	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000494262	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000494262	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000494262	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000446177	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000446177	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000446177	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000479692	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000479692	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000479692	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000497750	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000497750	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000497750	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000470819	ENST00000322475		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000470819	ENST00000280057		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-intron	ENST00000470819	ENST00000497449		TCGA	LD	GBM	TCGA-06-A6S1-01A	CDKN2A	chr9	21994138	-	FAM124A	chr13	51825604	+
intron-3CDS	ENST00000382882	ENST00000513615		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000382882	ENST00000281243		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000382882	ENST00000428702		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000382882	ENST00000508623		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000411638	ENST00000513615		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000411638	ENST00000281243		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000411638	ENST00000428702		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000411638	ENST00000508623		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000542778	ENST00000513615		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000542778	ENST00000281243		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000542778	ENST00000428702		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000542778	ENST00000508623		TCGA	LD	GBM	TCGA-06-A6S1-01A	NELFA	chr4	2043443	-	QDPR	chr4	17506098	-
intron-3CDS	ENST00000535916	ENST00000340647		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000535916	ENST00000330045		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000535916	ENST00000369459		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000535916	ENST00000369462		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-intron	ENST00000535916	ENST00000399042		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000340647		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000330045		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000369459		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
In-frame	ENST00000286428	ENST00000369462		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
5CDS-intron	ENST00000286428	ENST00000399042		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000340647		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000330045		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000369459		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-3CDS	ENST00000459836	ENST00000369462		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
intron-intron	ENST00000459836	ENST00000399042		TCGA	LD	GBM	TCGA-06-A6S1-01A	VBP1	chrX	154444852	+	BRCC3	chrX	154300602	+
Frame-shit	ENST00000258111	ENST00000311915		TCGA	LD	GBM	TCGA-06-A7TK-01A	KCNMB4	chr12	70760850	+	C12orf66	chr12	64588438	-
In-frame	ENST00000258111	ENST00000544871		TCGA	LD	GBM	TCGA-06-A7TK-01A	KCNMB4	chr12	70760850	+	C12orf66	chr12	64588438	-
Frame-shit	ENST00000258111	ENST00000398055		TCGA	LD	GBM	TCGA-06-A7TK-01A	KCNMB4	chr12	70760850	+	C12orf66	chr12	64588438	-
5CDS-intron	ENST00000258111	ENST00000540673		TCGA	LD	GBM	TCGA-06-A7TK-01A	KCNMB4	chr12	70760850	+	C12orf66	chr12	64588438	-
intron-5UTR	ENST00000553277	ENST00000393240		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553277	ENST00000261205		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553277	ENST00000457153		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553277	ENST00000552744		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-3UTR	ENST00000553277	ENST00000549454		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000243077	ENST00000393240		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000243077	ENST00000261205		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000243077	ENST00000457153		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000243077	ENST00000552744		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000243077	ENST00000549454		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000338962	ENST00000393240		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000338962	ENST00000261205		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000338962	ENST00000457153		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000338962	ENST00000552744		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-3UTR	ENST00000338962	ENST00000549454		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000554174	ENST00000393240		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000554174	ENST00000261205		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000554174	ENST00000457153		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000554174	ENST00000552744		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-3UTR	ENST00000554174	ENST00000549454		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553446	ENST00000393240		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553446	ENST00000261205		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553446	ENST00000457153		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000553446	ENST00000552744		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
intron-3UTR	ENST00000553446	ENST00000549454		TCGA	LD	GBM	TCGA-06-A7TK-01A	LRP1	chr12	57575074	+	SYT1	chr12	79611283	+
5CDS-intron	ENST00000462284	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000462284	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000356290	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000540827	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258149	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000428863	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393412	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000258148	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000544561	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393410	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000393413	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000517852	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000545204	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000350057	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000360430	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000299252	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000348801	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
5CDS-intron	ENST00000478070	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000335762		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399655		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000480911		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399644		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000344100		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399638		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399629		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399597		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000327702		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399621		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399649		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399637		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000402845		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399591		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399641		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000347598		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399606		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399595		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399601		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399603		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399634		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000399617		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000406454		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
intron-intron	ENST00000544125	ENST00000491104		TCGA	LD	GBM	TCGA-06-A7TK-01A	MDM2	chr12	69203072	+	CACNA1C	chr12	2742795	+
Frame-shit	ENST00000548256	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
Frame-shit	ENST00000548256	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000548256	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000548256	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5UTR-3CDS	ENST00000551420	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5UTR-3CDS	ENST00000551420	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5UTR-intron	ENST00000551420	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5UTR-intron	ENST00000551420	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
Frame-shit	ENST00000300209	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
Frame-shit	ENST00000300209	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000300209	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000300209	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
intron-3CDS	ENST00000552307	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
intron-3CDS	ENST00000552307	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
intron-intron	ENST00000552307	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
intron-intron	ENST00000552307	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
Frame-shit	ENST00000333012	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
Frame-shit	ENST00000333012	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000333012	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
5CDS-intron	ENST00000333012	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	METTL21B	chr12	58166911	+	CNOT2	chr12	70704675	+
Frame-shit	ENST00000552285	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000552285	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000552285	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000315970	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000315970	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000315970	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000439210	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000439210	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000439210	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000389146	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000389146	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000389146	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000413095	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000413095	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000413095	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000551035	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000551035	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000551035	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000435406	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000435406	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000435406	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000257966	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000257966	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000257966	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000389142	ENST00000355086		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000389142	ENST00000357825		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
Frame-shit	ENST00000389142	ENST00000543397		TCGA	LD	GBM	TCGA-06-A7TK-01A	OS9	chr12	58089626	+	SRGAP1	chr12	64410730	+
5UTR-3CDS	ENST00000397096	ENST00000305108		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000397096	ENST00000397265		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000397096	ENST00000542920		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000397096	ENST00000433832		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-intron	ENST00000397096	ENST00000537416		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000427057	ENST00000305108		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000427057	ENST00000397265		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000427057	ENST00000542920		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000427057	ENST00000433832		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-intron	ENST00000427057	ENST00000537416		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
In-frame	ENST00000228820	ENST00000305108		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
In-frame	ENST00000228820	ENST00000397265		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000228820	ENST00000542920		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000228820	ENST00000433832		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000228820	ENST00000537416		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000447133	ENST00000305108		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000447133	ENST00000397265		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000447133	ENST00000542920		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000447133	ENST00000433832		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
5UTR-intron	ENST00000447133	ENST00000537416		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000476985	ENST00000305108		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000476985	ENST00000397265		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000476985	ENST00000542920		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000476985	ENST00000433832		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
intron-intron	ENST00000476985	ENST00000537416		TCGA	LD	GBM	TCGA-06-A7TK-01A	PARP11	chr12	3982378	-	NINJ2	chr12	675344	-
In-frame	ENST00000543727	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000543727	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-intron	ENST00000543727	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-5UTR	ENST00000543727	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000550559	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000550559	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-intron	ENST00000550559	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-5UTR	ENST00000550559	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000548851	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000548851	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-intron	ENST00000548851	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-5UTR	ENST00000548851	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000454289	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000454289	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-intron	ENST00000454289	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-5UTR	ENST00000454289	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000540550	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000540550	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-intron	ENST00000540550	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-5UTR	ENST00000540550	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000323833	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
In-frame	ENST00000323833	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-intron	ENST00000323833	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5CDS-5UTR	ENST00000323833	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5UTR-3CDS	ENST00000350762	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5UTR-3CDS	ENST00000350762	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5UTR-intron	ENST00000350762	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
5UTR-5UTR	ENST00000350762	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
3UTR-3CDS	ENST00000497617	ENST00000229195		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
3UTR-3CDS	ENST00000497617	ENST00000418359		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
3UTR-intron	ENST00000497617	ENST00000548230		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
3UTR-5UTR	ENST00000497617	ENST00000551483		TCGA	LD	GBM	TCGA-06-A7TK-01A	TSFM	chr12	58177066	+	CNOT2	chr12	70732223	+
Frame-shit	ENST00000433119	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000433119	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000433119	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000433119	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000433119	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000433119	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000433119	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000433119	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000295757	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000295757	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000295757	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000295757	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000295757	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000295757	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000295757	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000295757	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000402259	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000402259	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3UTR	ENST00000402259	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3UTR	ENST00000402259	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000402259	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000402259	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000402259	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000402259	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000402271	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000402271	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000402271	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000402271	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000402271	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000402271	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000402271	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000402271	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000446613	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000446613	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3UTR	ENST00000446613	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3UTR	ENST00000446613	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000446613	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000446613	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000446613	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000446613	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000404548	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000404548	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000404548	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000404548	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404548	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404548	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404548	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404548	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000404040	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000404040	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000404040	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000404040	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404040	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404040	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404040	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000404040	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000405025	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000405025	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000405025	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000405025	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000405025	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000405025	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000405025	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000405025	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000522202	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000522202	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000522202	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000522202	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000522202	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000522202	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000522202	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000522202	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000437379	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
Frame-shit	ENST00000437379	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000437379	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-3UTR	ENST00000437379	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000437379	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000437379	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000437379	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
5CDS-intron	ENST00000437379	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000495099	ENST00000435459		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000495099	ENST00000383787		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3UTR	ENST00000495099	ENST00000383785		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3UTR	ENST00000495099	ENST00000383788		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000495099	ENST00000603752		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000495099	ENST00000383781		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000495099	ENST00000603808		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-intron	ENST00000495099	ENST00000383786		TCGA	LD	GBM	TCGA-06-A7TL-01A	HDAC11	chr3	13525064	+	COLQ	chr3	15495438	-
intron-3CDS	ENST00000493952	ENST00000357716		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
intron-3CDS	ENST00000493952	ENST00000486284		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
intron-3CDS	ENST00000493952	ENST00000389336		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
intron-3CDS	ENST00000493952	ENST00000402647		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
intron-3CDS	ENST00000493952	ENST00000403881		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
intron-intron	ENST00000493952	ENST00000458641		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000338745	ENST00000357716		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000338745	ENST00000486284		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000338745	ENST00000389336		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000338745	ENST00000402647		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000338745	ENST00000403881		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5CDS-intron	ENST00000338745	ENST00000458641		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000417717	ENST00000357716		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000417717	ENST00000486284		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000417717	ENST00000389336		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000417717	ENST00000402647		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000417717	ENST00000403881		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5CDS-intron	ENST00000417717	ENST00000458641		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000454909	ENST00000357716		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000454909	ENST00000486284		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000454909	ENST00000389336		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000454909	ENST00000402647		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
Frame-shit	ENST00000454909	ENST00000403881		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5CDS-intron	ENST00000454909	ENST00000458641		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5UTR-3CDS	ENST00000475083	ENST00000357716		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5UTR-3CDS	ENST00000475083	ENST00000486284		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5UTR-3CDS	ENST00000475083	ENST00000389336		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5UTR-3CDS	ENST00000475083	ENST00000402647		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5UTR-3CDS	ENST00000475083	ENST00000403881		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
5UTR-intron	ENST00000475083	ENST00000458641		TCGA	LD	GBM	TCGA-06-A7TL-01A	SATB1	chr3	18456603	-	GRM7	chr3	7721736	+
3UTR-3CDS	ENST00000453168	ENST00000245046		TCGA	LD	GBM	TCGA-06-A7TL-01A	STT3B	chr3	31574804	+	EMC3	chr3	10019130	-
3UTR-5UTR	ENST00000453168	ENST00000497557		TCGA	LD	GBM	TCGA-06-A7TL-01A	STT3B	chr3	31574804	+	EMC3	chr3	10019130	-
3UTR-5UTR	ENST00000453168	ENST00000429759		TCGA	LD	GBM	TCGA-06-A7TL-01A	STT3B	chr3	31574804	+	EMC3	chr3	10019130	-
In-frame	ENST00000295770	ENST00000245046		TCGA	LD	GBM	TCGA-06-A7TL-01A	STT3B	chr3	31574804	+	EMC3	chr3	10019130	-
5CDS-5UTR	ENST00000295770	ENST00000497557		TCGA	LD	GBM	TCGA-06-A7TL-01A	STT3B	chr3	31574804	+	EMC3	chr3	10019130	-
5CDS-5UTR	ENST00000295770	ENST00000429759		TCGA	LD	GBM	TCGA-06-A7TL-01A	STT3B	chr3	31574804	+	EMC3	chr3	10019130	-
Frame-shit	ENST00000283629	ENST00000205636		TCGA	LD	GBM	TCGA-06-A7TL-01A	UBP1	chr3	33467082	-	CMTM6	chr3	32533378	-
Frame-shit	ENST00000447368	ENST00000205636		TCGA	LD	GBM	TCGA-06-A7TL-01A	UBP1	chr3	33467082	-	CMTM6	chr3	32533378	-
Frame-shit	ENST00000283628	ENST00000205636		TCGA	LD	GBM	TCGA-06-A7TL-01A	UBP1	chr3	33467082	-	CMTM6	chr3	32533378	-
intron-3CDS	ENST00000486388	ENST00000205636		TCGA	LD	GBM	TCGA-06-A7TL-01A	UBP1	chr3	33467082	-	CMTM6	chr3	32533378	-
Frame-shit	ENST00000397927	ENST00000275428		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000397927	ENST00000005374		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
In-frame	ENST00000397927	ENST00000409144		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000397927	ENST00000409390		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000397927	ENST00000598361		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
5CDS-intron	ENST00000397927	ENST00000409436		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000313669	ENST00000275428		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000313669	ENST00000005374		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
In-frame	ENST00000313669	ENST00000409144		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000313669	ENST00000409390		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000313669	ENST00000598361		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
5CDS-intron	ENST00000313669	ENST00000409436		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000528707	ENST00000275428		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000528707	ENST00000005374		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
In-frame	ENST00000528707	ENST00000409144		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000528707	ENST00000409390		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
Frame-shit	ENST00000528707	ENST00000598361		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
5CDS-intron	ENST00000528707	ENST00000409436		TCGA	LD	GBM	TCGA-12-0616-01A	COL26A1	chr7	101176424	+	GGCT	chr7	30536851	-
intron-3CDS	ENST00000396193	ENST00000285279		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000396193	ENST00000433959		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000396193	ENST00000545390		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000396193	ENST00000428648		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000396193	ENST00000428097		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000396193	ENST00000418904		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-intron	ENST00000396193	ENST00000454227		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000396193	ENST00000453256		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000396193	ENST00000427700		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000396193	ENST00000471168		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396191	ENST00000285279		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396191	ENST00000433959		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396191	ENST00000545390		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396191	ENST00000428648		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396191	ENST00000428097		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396191	ENST00000418904		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000396191	ENST00000454227		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396191	ENST00000453256		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396191	ENST00000427700		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396191	ENST00000471168		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000321453	ENST00000285279		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000321453	ENST00000433959		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000321453	ENST00000545390		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000321453	ENST00000428648		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000321453	ENST00000428097		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000321453	ENST00000418904		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000321453	ENST00000454227		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000321453	ENST00000453256		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000321453	ENST00000427700		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000321453	ENST00000471168		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396184	ENST00000285279		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396184	ENST00000433959		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396184	ENST00000545390		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396184	ENST00000428648		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396184	ENST00000428097		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396184	ENST00000418904		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000396184	ENST00000454227		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396184	ENST00000453256		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396184	ENST00000427700		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396184	ENST00000471168		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000479980	ENST00000285279		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000479980	ENST00000433959		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000479980	ENST00000545390		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000479980	ENST00000428648		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000479980	ENST00000428097		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000479980	ENST00000418904		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-intron	ENST00000479980	ENST00000454227		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000479980	ENST00000453256		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000479980	ENST00000427700		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000479980	ENST00000471168		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396182	ENST00000285279		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396182	ENST00000433959		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
In-frame	ENST00000396182	ENST00000545390		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396182	ENST00000428648		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396182	ENST00000428097		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396182	ENST00000418904		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000396182	ENST00000454227		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396182	ENST00000453256		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396182	ENST00000427700		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000396182	ENST00000471168		TCGA	LD	GBM	TCGA-12-0616-01A	PDE1C	chr7	32091166	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000361368	ENST00000397927		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
Frame-shit	ENST00000361368	ENST00000313669		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
Frame-shit	ENST00000361368	ENST00000528707		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
Frame-shit	ENST00000361125	ENST00000397927		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
Frame-shit	ENST00000361125	ENST00000313669		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
Frame-shit	ENST00000361125	ENST00000528707		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
intron-3CDS	ENST00000480055	ENST00000397927		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
intron-3CDS	ENST00000480055	ENST00000313669		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
intron-3CDS	ENST00000480055	ENST00000528707		TCGA	LD	GBM	TCGA-12-0616-01A	SMURF1	chr7	98741349	-	COL26A1	chr7	101176363	+
Frame-shit	ENST00000428135	ENST00000404826		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
Frame-shit	ENST00000428135	ENST00000389531		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
5CDS-intron	ENST00000428135	ENST00000466611		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
Frame-shit	ENST00000409389	ENST00000404826		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
Frame-shit	ENST00000409389	ENST00000389531		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
5CDS-intron	ENST00000409389	ENST00000466611		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
Frame-shit	ENST00000409604	ENST00000404826		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
Frame-shit	ENST00000409604	ENST00000389531		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
5CDS-intron	ENST00000409604	ENST00000466611		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
intron-3CDS	ENST00000496855	ENST00000404826		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
intron-3CDS	ENST00000496855	ENST00000389531		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
intron-intron	ENST00000496855	ENST00000466611		TCGA	LD	GBM	TCGA-12-0616-01A	SNX13	chr7	17979907	-	SDK1	chr7	4245511	+
5UTR-3CDS	ENST00000299293	ENST00000548804		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000299293	ENST00000337737		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000299293	ENST00000548198		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000299293	ENST00000551632		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000548804		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000337737		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000548198		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000551632		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000548804		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000337737		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000548198		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000551632		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000548804		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000337737		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000548198		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000551632		TCGA	LD	GBM	TCGA-12-3653-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5CDS-intron	ENST00000368346	ENST00000488498		TCGA	LD	GBM	TCGA-14-0787-01A	ASH1L	chr1	155385535	-	C1orf61	chr1	156384545	-
5CDS-intron	ENST00000368346	ENST00000368243		TCGA	LD	GBM	TCGA-14-0787-01A	ASH1L	chr1	155385535	-	C1orf61	chr1	156384545	-
5CDS-intron	ENST00000392403	ENST00000488498		TCGA	LD	GBM	TCGA-14-0787-01A	ASH1L	chr1	155385535	-	C1orf61	chr1	156384545	-
5CDS-intron	ENST00000392403	ENST00000368243		TCGA	LD	GBM	TCGA-14-0787-01A	ASH1L	chr1	155385535	-	C1orf61	chr1	156384545	-
intron-intron	ENST00000548830	ENST00000488498		TCGA	LD	GBM	TCGA-14-0787-01A	ASH1L	chr1	155385535	-	C1orf61	chr1	156384545	-
intron-intron	ENST00000548830	ENST00000368243		TCGA	LD	GBM	TCGA-14-0787-01A	ASH1L	chr1	155385535	-	C1orf61	chr1	156384545	-
Frame-shit	ENST00000350796	ENST00000571995		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
5CDS-intron	ENST00000350796	ENST00000571880		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
5CDS-5UTR	ENST00000350796	ENST00000269347		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
5CDS-5UTR	ENST00000350796	ENST00000538809		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-3CDS	ENST00000396741	ENST00000571995		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-intron	ENST00000396741	ENST00000571880		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-5UTR	ENST00000396741	ENST00000269347		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-5UTR	ENST00000396741	ENST00000538809		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-3CDS	ENST00000488964	ENST00000571995		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-intron	ENST00000488964	ENST00000571880		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-5UTR	ENST00000488964	ENST00000269347		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
intron-5UTR	ENST00000488964	ENST00000538809		TCGA	LD	GBM	TCGA-14-0787-01A	CYTH3	chr7	6312105	-	RAB40B	chr17	80618923	-
5CDS-intron	ENST00000479054	ENST00000438911		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000479054	ENST00000530374		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000479054	ENST00000403000		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000479054	ENST00000424149		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000479054	ENST00000306145		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000345716	ENST00000438911		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000345716	ENST00000530374		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000345716	ENST00000403000		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000345716	ENST00000424149		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000345716	ENST00000306145		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000488380	ENST00000438911		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000488380	ENST00000530374		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000488380	ENST00000403000		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000488380	ENST00000424149		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000488380	ENST00000306145		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000420808	ENST00000438911		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-intron	ENST00000420808	ENST00000530374		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000420808	ENST00000403000		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000420808	ENST00000424149		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
5CDS-5UTR	ENST00000420808	ENST00000306145		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
intron-intron	ENST00000464280	ENST00000438911		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
intron-intron	ENST00000464280	ENST00000530374		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
intron-5UTR	ENST00000464280	ENST00000403000		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
intron-5UTR	ENST00000464280	ENST00000424149		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
intron-5UTR	ENST00000464280	ENST00000306145		TCGA	LD	GBM	TCGA-14-0787-01A	NISCH	chr3	52504923	+	CYHR1	chr8	145690479	-
Frame-shit	ENST00000337907	ENST00000471889		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
Frame-shit	ENST00000337907	ENST00000377479		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
Frame-shit	ENST00000337907	ENST00000289877		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
5CDS-3UTR	ENST00000337907	ENST00000481265		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000377464	ENST00000471889		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000377464	ENST00000377479		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000377464	ENST00000289877		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3UTR	ENST00000377464	ENST00000481265		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
Frame-shit	ENST00000400907	ENST00000471889		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
Frame-shit	ENST00000400907	ENST00000377479		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
Frame-shit	ENST00000400907	ENST00000289877		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
5CDS-3UTR	ENST00000400907	ENST00000481265		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
In-frame	ENST00000400908	ENST00000471889		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
In-frame	ENST00000400908	ENST00000377479		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
In-frame	ENST00000400908	ENST00000289877		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
5CDS-3UTR	ENST00000400908	ENST00000481265		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000476556	ENST00000471889		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000476556	ENST00000377479		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000476556	ENST00000289877		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3UTR	ENST00000476556	ENST00000481265		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000460659	ENST00000471889		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000460659	ENST00000377479		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3CDS	ENST00000460659	ENST00000289877		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
intron-3UTR	ENST00000460659	ENST00000481265		TCGA	LD	GBM	TCGA-14-0787-01A	RERE	chr1	8601273	-	SLC45A1	chr1	8395497	+
5CDS-5UTR	ENST00000326737	ENST00000588552		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000262963		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000372412		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000348075		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000357368		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000353284		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000587303		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000588012		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-5UTR	ENST00000326737	ENST00000592099		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
5CDS-intron	ENST00000326737	ENST00000590509		TCGA	LD	GBM	TCGA-14-0789-01A	HARBI1	chr11	46637118	-	PTPRS	chr19	5246056	-
Frame-shit	ENST00000356175	ENST00000325874		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
Frame-shit	ENST00000358273	ENST00000325874		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000431387	ENST00000325874		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000581280		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000394744		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	GBM	TCGA-14-0789-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000437600	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000437600	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000437600	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000437600	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000437600	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000437600	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000437600	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000437600	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000292538	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000292538	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292538	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292538	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292538	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292538	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000292538	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292538	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000393824	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000393824	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000393824	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000393824	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000393824	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000393824	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000393824	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000393824	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-3CDS	ENST00000547394	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-3CDS	ENST00000547394	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000547394	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000547394	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000547394	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000547394	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-intron	ENST00000547394	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000547394	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000360264	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000360264	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000360264	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000360264	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000360264	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000360264	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000360264	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000360264	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000425244	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000425244	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000425244	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000425244	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000425244	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000425244	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000425244	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000425244	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000292535	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000292535	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292535	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292535	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292535	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292535	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000292535	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000292535	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000549414	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000549414	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000549414	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000549414	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000549414	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000549414	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000549414	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000549414	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000556210	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000556210	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000556210	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000556210	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000556210	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000556210	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000556210	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000556210	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000550008	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000550008	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000550008	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000550008	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000550008	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000550008	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000550008	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000550008	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000546411	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
In-frame	ENST00000546411	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000546411	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000546411	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000546411	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000546411	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000546411	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000546411	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-3CDS	ENST00000560541	ENST00000399322		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-3CDS	ENST00000560541	ENST00000258767		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-5UTR	ENST00000560541	ENST00000403951		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-5UTR	ENST00000560541	ENST00000402815		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-5UTR	ENST00000560541	ENST00000407950		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-5UTR	ENST00000560541	ENST00000444700		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-intron	ENST00000560541	ENST00000406247		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
3UTR-5UTR	ENST00000560541	ENST00000403963		TCGA	LD	GBM	TCGA-14-0790-01B	CUX1	chr7	101671425	+	DGKB	chr7	14881075	-
intron-3UTR	ENST00000269383	ENST00000225614		TCGA	LD	GBM	TCGA-14-0790-01B	TRIM65	chr17	73887358	-	GALK1	chr17	73747818	-
intron-intron	ENST00000269383	ENST00000588479		TCGA	LD	GBM	TCGA-14-0790-01B	TRIM65	chr17	73887358	-	GALK1	chr17	73747818	-
intron-intron	ENST00000269383	ENST00000437911		TCGA	LD	GBM	TCGA-14-0790-01B	TRIM65	chr17	73887358	-	GALK1	chr17	73747818	-
intron-3CDS	ENST00000411630	ENST00000257290		TCGA	LD	GBM	TCGA-14-0817-01A	DANCR	chr4	53580405	+	PDGFRA	chr4	55143555	+
intron-intron	ENST00000411630	ENST00000508170		TCGA	LD	GBM	TCGA-14-0817-01A	DANCR	chr4	53580405	+	PDGFRA	chr4	55143555	+
In-frame	ENST00000335154	ENST00000336023		TCGA	LD	GBM	TCGA-14-0817-01A	FMNL3	chr12	50100838	-	TUBA1B	chr12	49523505	-
In-frame	ENST00000550488	ENST00000336023		TCGA	LD	GBM	TCGA-14-0817-01A	FMNL3	chr12	50100838	-	TUBA1B	chr12	49523505	-
In-frame	ENST00000352151	ENST00000336023		TCGA	LD	GBM	TCGA-14-0817-01A	FMNL3	chr12	50100838	-	TUBA1B	chr12	49523505	-
In-frame	ENST00000293590	ENST00000336023		TCGA	LD	GBM	TCGA-14-0817-01A	FMNL3	chr12	50100838	-	TUBA1B	chr12	49523505	-
intron-3CDS	ENST00000550668	ENST00000336023		TCGA	LD	GBM	TCGA-14-0817-01A	FMNL3	chr12	50100838	-	TUBA1B	chr12	49523505	-
Frame-shit	ENST00000307768	ENST00000253048		TCGA	LD	GBM	TCGA-14-0817-01A	JAGN1	chr3	9934710	+	ZC3H4	chr19	47589795	-
5CDS-intron	ENST00000307768	ENST00000594019		TCGA	LD	GBM	TCGA-14-0817-01A	JAGN1	chr3	9934710	+	ZC3H4	chr19	47589795	-
intron-3CDS	ENST00000489724	ENST00000253048		TCGA	LD	GBM	TCGA-14-0817-01A	JAGN1	chr3	9934710	+	ZC3H4	chr19	47589795	-
intron-intron	ENST00000489724	ENST00000594019		TCGA	LD	GBM	TCGA-14-0817-01A	JAGN1	chr3	9934710	+	ZC3H4	chr19	47589795	-
Frame-shit	ENST00000447750	ENST00000376840		TCGA	LD	GBM	TCGA-14-0871-01A	GDI1	chrX	153667210	+	TBC1D8	chr2	101644815	-
Frame-shit	ENST00000447750	ENST00000409318		TCGA	LD	GBM	TCGA-14-0871-01A	GDI1	chrX	153667210	+	TBC1D8	chr2	101644815	-
5CDS-intron	ENST00000447750	ENST00000462819		TCGA	LD	GBM	TCGA-14-0871-01A	GDI1	chrX	153667210	+	TBC1D8	chr2	101644815	-
intron-3CDS	ENST00000465640	ENST00000376840		TCGA	LD	GBM	TCGA-14-0871-01A	GDI1	chrX	153667210	+	TBC1D8	chr2	101644815	-
intron-3CDS	ENST00000465640	ENST00000409318		TCGA	LD	GBM	TCGA-14-0871-01A	GDI1	chrX	153667210	+	TBC1D8	chr2	101644815	-
intron-intron	ENST00000465640	ENST00000462819		TCGA	LD	GBM	TCGA-14-0871-01A	GDI1	chrX	153667210	+	TBC1D8	chr2	101644815	-
Frame-shit	ENST00000296499	ENST00000358151		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000296499	ENST00000355824		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000296499	ENST00000309235		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000296499	ENST00000374374		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
Frame-shit	ENST00000433996	ENST00000358151		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000433996	ENST00000355824		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000433996	ENST00000309235		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000433996	ENST00000374374		TCGA	LD	GBM	TCGA-14-0871-01A	NDST3	chr4	119064839	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000257100	ENST00000566855		TCGA	LD	GBM	TCGA-14-1034-01A	SPOCD1	chr1	32263808	-	C1orf234	chr1	23337693	-
3UTR-intron	ENST00000373648	ENST00000566855		TCGA	LD	GBM	TCGA-14-1034-01A	SPOCD1	chr1	32263808	-	C1orf234	chr1	23337693	-
5CDS-intron	ENST00000360482	ENST00000566855		TCGA	LD	GBM	TCGA-14-1034-01A	SPOCD1	chr1	32263808	-	C1orf234	chr1	23337693	-
5CDS-intron	ENST00000533231	ENST00000566855		TCGA	LD	GBM	TCGA-14-1034-01A	SPOCD1	chr1	32263808	-	C1orf234	chr1	23337693	-
5UTR-5UTR	ENST00000382159	ENST00000221566		TCGA	LD	GBM	TCGA-14-1402-02A	GNG7	chr19	2702644	-	SGTA	chr19	2769089	-
5UTR-intron	ENST00000382159	ENST00000586711		TCGA	LD	GBM	TCGA-14-1402-02A	GNG7	chr19	2702644	-	SGTA	chr19	2769089	-
In-frame	ENST00000275036	ENST00000184266		TCGA	LD	GBM	TCGA-14-1402-02A	HMGN3	chr6	79944263	-	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000275036	ENST00000485064		TCGA	LD	GBM	TCGA-14-1402-02A	HMGN3	chr6	79944263	-	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000275036	ENST00000492739		TCGA	LD	GBM	TCGA-14-1402-02A	HMGN3	chr6	79944263	-	NDUFB4	chr3	120319958	+
In-frame	ENST00000344726	ENST00000184266		TCGA	LD	GBM	TCGA-14-1402-02A	HMGN3	chr6	79944263	-	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000344726	ENST00000485064		TCGA	LD	GBM	TCGA-14-1402-02A	HMGN3	chr6	79944263	-	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000344726	ENST00000492739		TCGA	LD	GBM	TCGA-14-1402-02A	HMGN3	chr6	79944263	-	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000335388	ENST00000159060		TCGA	LD	GBM	TCGA-14-1402-02A	LPAL2	chr6	160940998	-	NOX3	chr6	155732494	-
Frame-shit	ENST00000361574	ENST00000356663		TCGA	LD	GBM	TCGA-14-1402-02A	R3HDM4	chr19	913087	-	TMEM259	chr19	1010894	-
In-frame	ENST00000361574	ENST00000333175		TCGA	LD	GBM	TCGA-14-1402-02A	R3HDM4	chr19	913087	-	TMEM259	chr19	1010894	-
Frame-shit	ENST00000587975	ENST00000356663		TCGA	LD	GBM	TCGA-14-1402-02A	R3HDM4	chr19	913087	-	TMEM259	chr19	1010894	-
In-frame	ENST00000587975	ENST00000333175		TCGA	LD	GBM	TCGA-14-1402-02A	R3HDM4	chr19	913087	-	TMEM259	chr19	1010894	-
In-frame	ENST00000348405	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000348405	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000348405	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000348405	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000348405	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000513858	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000513858	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000513858	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000513858	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000513858	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000395310	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000395310	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000395310	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000395310	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000395310	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000443462	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000443462	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000443462	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000443462	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000443462	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000509142	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000509142	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000509142	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000509142	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000509142	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000326950	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000326950	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000326950	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000326950	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000326950	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000432794	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000432794	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000432794	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000432794	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000432794	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000311785	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000311785	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000311785	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000311785	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000311785	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000448323	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000448323	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000448323	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000448323	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000448323	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505472	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505472	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505472	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505472	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000505472	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000500777	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000500777	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000500777	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000500777	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000500777	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508502	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508502	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508502	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508502	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000508502	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
Frame-shit	ENST00000355196	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
Frame-shit	ENST00000355196	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
Frame-shit	ENST00000355196	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
Frame-shit	ENST00000355196	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000355196	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
intron-3CDS	ENST00000264405	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
intron-3CDS	ENST00000264405	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
intron-3CDS	ENST00000264405	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
intron-3CDS	ENST00000264405	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
intron-5UTR	ENST00000264405	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505984	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505984	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505984	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000505984	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000505984	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508479	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508479	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508479	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
In-frame	ENST00000508479	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-5UTR	ENST00000508479	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5UTR-3CDS	ENST00000436790	ENST00000295470		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5UTR-3CDS	ENST00000436790	ENST00000349655		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5UTR-3CDS	ENST00000436790	ENST00000602300		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5UTR-3CDS	ENST00000436790	ENST00000502762		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5UTR-5UTR	ENST00000436790	ENST00000514511		TCGA	LD	GBM	TCGA-14-1402-02A	SEC31A	chr4	83799883	-	HNRNPDL	chr4	83348717	-
5CDS-intron	ENST00000361731	ENST00000335388		TCGA	LD	GBM	TCGA-14-1402-02A	SFT2D1	chr6	166755907	-	LPAL2	chr6	160882407	-
5UTR-intron	ENST00000487841	ENST00000335388		TCGA	LD	GBM	TCGA-14-1402-02A	SFT2D1	chr6	166755907	-	LPAL2	chr6	160882407	-
In-frame	ENST00000275300	ENST00000414563		TCGA	LD	GBM	TCGA-14-1402-02A	SLC22A3	chr6	160829953	+	ZDHHC14	chr6	157963617	+
In-frame	ENST00000275300	ENST00000359775		TCGA	LD	GBM	TCGA-14-1402-02A	SLC22A3	chr6	160829953	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000275300	ENST00000341375		TCGA	LD	GBM	TCGA-14-1402-02A	SLC22A3	chr6	160829953	+	ZDHHC14	chr6	157963617	+
In-frame	ENST00000392145	ENST00000414563		TCGA	LD	GBM	TCGA-14-1402-02A	SLC22A3	chr6	160829953	+	ZDHHC14	chr6	157963617	+
In-frame	ENST00000392145	ENST00000359775		TCGA	LD	GBM	TCGA-14-1402-02A	SLC22A3	chr6	160829953	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000392145	ENST00000341375		TCGA	LD	GBM	TCGA-14-1402-02A	SLC22A3	chr6	160829953	+	ZDHHC14	chr6	157963617	+
5CDS-5UTR	ENST00000356239	ENST00000395535		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000356239	ENST00000352861		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000356239	ENST00000415949		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000356239	ENST00000450622		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000358100	ENST00000395535		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000358100	ENST00000352861		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000358100	ENST00000415949		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000358100	ENST00000450622		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000359028	ENST00000395535		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000359028	ENST00000352861		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000359028	ENST00000415949		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000359028	ENST00000450622		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000394564	ENST00000395535		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000394564	ENST00000352861		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000394564	ENST00000415949		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5CDS-5UTR	ENST00000394564	ENST00000450622		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
intron-5UTR	ENST00000491695	ENST00000395535		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
intron-5UTR	ENST00000491695	ENST00000352861		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
intron-5UTR	ENST00000491695	ENST00000415949		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
intron-5UTR	ENST00000491695	ENST00000450622		TCGA	LD	GBM	TCGA-14-1823-01A	AKAP9	chr7	91570461	+	SEC61G	chr7	54825287	-
5UTR-intron	ENST00000229195	ENST00000238571		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000229195	ENST00000325680		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000229195	ENST00000552421		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000229195	ENST00000546901		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000418359	ENST00000238571		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000418359	ENST00000325680		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000418359	ENST00000552421		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
5UTR-intron	ENST00000418359	ENST00000546901		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000548230	ENST00000238571		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000548230	ENST00000325680		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000548230	ENST00000552421		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000548230	ENST00000546901		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000551483	ENST00000238571		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000551483	ENST00000325680		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000551483	ENST00000552421		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
intron-intron	ENST00000551483	ENST00000546901		TCGA	LD	GBM	TCGA-14-1823-01A	CNOT2	chr12	70637260	+	YLPM1	chr14	75295916	+
In-frame	ENST00000371730	ENST00000606738		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
5CDS-5UTR	ENST00000371730	ENST00000435576		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
In-frame	ENST00000371733	ENST00000606738		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
5CDS-5UTR	ENST00000371733	ENST00000435576		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
intron-3CDS	ENST00000396122	ENST00000606738		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
intron-5UTR	ENST00000396122	ENST00000435576		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
intron-3CDS	ENST00000493793	ENST00000606738		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
intron-5UTR	ENST00000493793	ENST00000435576		TCGA	LD	GBM	TCGA-16-1045-01B	EPS15	chr1	51984871	-	TRABD2B	chr1	48267291	-
5UTR-3CDS	ENST00000247087	ENST00000556029		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000247087	ENST00000343315		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000247087	ENST00000266732		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000247087	ENST00000393053		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000247087	ENST00000261210		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-3UTR	ENST00000247087	ENST00000548223		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-3CDS	ENST00000374011	ENST00000556029		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000374011	ENST00000343315		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000374011	ENST00000266732		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000374011	ENST00000393053		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000374011	ENST00000261210		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-3UTR	ENST00000374011	ENST00000548223		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-3CDS	ENST00000480033	ENST00000556029		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000480033	ENST00000343315		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000480033	ENST00000266732		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000480033	ENST00000393053		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-intron	ENST00000480033	ENST00000261210		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
5UTR-3UTR	ENST00000480033	ENST00000548223		TCGA	LD	GBM	TCGA-19-0957-02A	AHDC1	chr1	27929908	-	TMPO	chr12	98938008	+
Frame-shit	ENST00000360565	ENST00000006275		TCGA	LD	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000360565	ENST00000588062		TCGA	LD	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000360565	ENST00000585934		TCGA	LD	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000360565	ENST00000592647		TCGA	LD	GBM	TCGA-19-2620-01A	SCAF1	chr19	50150087	+	TRAPPC6A	chr19	45668228	-
5CDS-intron	ENST00000506087	ENST00000296582		TCGA	LD	GBM	TCGA-19-2620-01A	TMEM192	chr4	166021780	-	TMEM184C	chr4	148593018	+
5CDS-intron	ENST00000506087	ENST00000508208		TCGA	LD	GBM	TCGA-19-2620-01A	TMEM192	chr4	166021780	-	TMEM184C	chr4	148593018	+
5CDS-intron	ENST00000306480	ENST00000296582		TCGA	LD	GBM	TCGA-19-2620-01A	TMEM192	chr4	166021780	-	TMEM184C	chr4	148593018	+
5CDS-intron	ENST00000306480	ENST00000508208		TCGA	LD	GBM	TCGA-19-2620-01A	TMEM192	chr4	166021780	-	TMEM184C	chr4	148593018	+
intron-3CDS	ENST00000359999	ENST00000377966		TCGA	LD	GBM	TCGA-19-2625-01A	CRB2	chr9	126140660	+	RECK	chr9	36102096	+
intron-intron	ENST00000359999	ENST00000479053		TCGA	LD	GBM	TCGA-19-2625-01A	CRB2	chr9	126140660	+	RECK	chr9	36102096	+
3UTR-3CDS	ENST00000373631	ENST00000377966		TCGA	LD	GBM	TCGA-19-2625-01A	CRB2	chr9	126140660	+	RECK	chr9	36102096	+
3UTR-intron	ENST00000373631	ENST00000479053		TCGA	LD	GBM	TCGA-19-2625-01A	CRB2	chr9	126140660	+	RECK	chr9	36102096	+
3UTR-3CDS	ENST00000373629	ENST00000377966		TCGA	LD	GBM	TCGA-19-2625-01A	CRB2	chr9	126140660	+	RECK	chr9	36102096	+
3UTR-intron	ENST00000373629	ENST00000479053		TCGA	LD	GBM	TCGA-19-2625-01A	CRB2	chr9	126140660	+	RECK	chr9	36102096	+
Frame-shit	ENST00000331457	ENST00000216181		TCGA	LD	GBM	TCGA-19-2625-01A	DRG1	chr22	31823168	+	MYH9	chr22	36723533	-
5CDS-intron	ENST00000331457	ENST00000475726		TCGA	LD	GBM	TCGA-19-2625-01A	DRG1	chr22	31823168	+	MYH9	chr22	36723533	-
5CDS-intron	ENST00000331457	ENST00000401701		TCGA	LD	GBM	TCGA-19-2625-01A	DRG1	chr22	31823168	+	MYH9	chr22	36723533	-
intron-3CDS	ENST00000433341	ENST00000216181		TCGA	LD	GBM	TCGA-19-2625-01A	DRG1	chr22	31823168	+	MYH9	chr22	36723533	-
intron-intron	ENST00000433341	ENST00000475726		TCGA	LD	GBM	TCGA-19-2625-01A	DRG1	chr22	31823168	+	MYH9	chr22	36723533	-
intron-intron	ENST00000433341	ENST00000401701		TCGA	LD	GBM	TCGA-19-2625-01A	DRG1	chr22	31823168	+	MYH9	chr22	36723533	-
intron-3CDS	ENST00000298004	ENST00000378357		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
intron-3UTR	ENST00000298004	ENST00000493245		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
intron-3CDS	ENST00000378617	ENST00000378357		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
intron-3UTR	ENST00000378617	ENST00000493245		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
5UTR-3CDS	ENST00000361778	ENST00000378357		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
5UTR-3UTR	ENST00000361778	ENST00000493245		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
5UTR-3CDS	ENST00000341666	ENST00000378357		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
5UTR-3UTR	ENST00000341666	ENST00000493245		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
5UTR-3CDS	ENST00000492770	ENST00000378357		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
5UTR-3UTR	ENST00000492770	ENST00000493245		TCGA	LD	GBM	TCGA-19-2625-01A	PIGO	chr9	35096558	-	CA9	chr9	35679851	+
intron-3CDS	ENST00000405409	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000414461	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000449924	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000262829	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000397303	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000359369	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000416721	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
In-frame	ENST00000438146	ENST00000215886		TCGA	LD	GBM	TCGA-19-2625-01A	RBFOX2	chr22	36424288	-	LGALS2	chr22	37967938	-
Frame-shit	ENST00000377966	ENST00000536101		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
Frame-shit	ENST00000377966	ENST00000335473		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
Frame-shit	ENST00000377966	ENST00000407587		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
5CDS-intron	ENST00000377966	ENST00000536204		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
3UTR-3CDS	ENST00000479053	ENST00000536101		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
3UTR-3CDS	ENST00000479053	ENST00000335473		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
3UTR-3CDS	ENST00000479053	ENST00000407587		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
3UTR-intron	ENST00000479053	ENST00000536204		TCGA	LD	GBM	TCGA-19-2625-01A	RECK	chr9	36052320	+	MYO18B	chr22	26399231	+
Frame-shit	ENST00000449054	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
Frame-shit	ENST00000449054	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
Frame-shit	ENST00000379238	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
Frame-shit	ENST00000379238	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
Frame-shit	ENST00000360802	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
In-frame	ENST00000360802	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
5UTR-3CDS	ENST00000379239	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
5UTR-3CDS	ENST00000379239	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000539807	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000539807	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
Frame-shit	ENST00000418786	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
In-frame	ENST00000418786	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000379225	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000379225	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000379235	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000379235	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000480885	ENST00000248899		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
intron-3CDS	ENST00000480885	ENST00000397147		TCGA	LD	GBM	TCGA-19-2625-01A	UBAP2	chr9	33986758	-	NCF4	chr22	37271695	+
5CDS-5UTR	ENST00000544604	ENST00000249014		TCGA	LD	GBM	TCGA-19-2625-01A	ZNRF3	chr22	29280054	+	CDC42EP1	chr22	37962079	+
5UTR-5UTR	ENST00000332811	ENST00000249014		TCGA	LD	GBM	TCGA-19-2625-01A	ZNRF3	chr22	29280054	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000402174	ENST00000249014		TCGA	LD	GBM	TCGA-19-2625-01A	ZNRF3	chr22	29280054	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000406323	ENST00000249014		TCGA	LD	GBM	TCGA-19-2625-01A	ZNRF3	chr22	29280054	+	CDC42EP1	chr22	37962079	+
Frame-shit	ENST00000409790	ENST00000283033		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000409790	ENST00000356957		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
5CDS-5UTR	ENST00000409790	ENST00000570917		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000409552	ENST00000283033		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000409552	ENST00000356957		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
5CDS-5UTR	ENST00000409552	ENST00000570917		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000465491	ENST00000283033		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000465491	ENST00000356957		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-5UTR	ENST00000465491	ENST00000570917		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000381822	ENST00000283033		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000381822	ENST00000356957		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
intron-5UTR	ENST00000381822	ENST00000570917		TCGA	LD	GBM	TCGA-19-4065-02A	CLEC16A	chr16	11076848	+	TXNDC11	chr16	11778101	-
Frame-shit	ENST00000324871	ENST00000395487		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000324871	ENST00000429094		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000324871	ENST00000551601		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000324871	ENST00000452445		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000324871	ENST00000549027		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000324871	ENST00000333837		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000324871	ENST00000437801		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5CDS-intron	ENST00000324871	ENST00000547172		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5CDS-intron	ENST00000324871	ENST00000548826		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000395487		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000429094		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000551601		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000452445		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000549027		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000333837		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000257848	ENST00000437801		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5CDS-intron	ENST00000257848	ENST00000547172		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5CDS-intron	ENST00000257848	ENST00000548826		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000395487		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000429094		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000551601		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000452445		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000549027		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000333837		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-3CDS	ENST00000548681	ENST00000437801		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-intron	ENST00000548681	ENST00000547172		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
5UTR-intron	ENST00000548681	ENST00000548826		TCGA	LD	GBM	TCGA-19-5960-01A	METTL1	chr12	58165757	-	NELL2	chr12	45004753	-
Frame-shit	ENST00000395487	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000395487	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000395487	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000395487	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000395487	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000395487	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000395487	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000395487	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000395487	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000429094	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000429094	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000429094	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000429094	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000429094	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000429094	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000429094	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000429094	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000429094	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000551601	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000551601	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000551601	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000551601	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000551601	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000551601	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000551601	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000551601	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000551601	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000452445	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000452445	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000452445	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000452445	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000452445	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000452445	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000452445	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000452445	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000452445	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000549027	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000549027	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000549027	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
In-frame	ENST00000549027	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549027	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549027	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549027	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549027	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000549027	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000333837	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000333837	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000333837	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000333837	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000333837	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000333837	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000333837	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000333837	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000333837	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437801	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437801	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437801	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000437801	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437801	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437801	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437801	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437801	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000437801	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000547172	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000547172	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000547172	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000547172	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-intron	ENST00000547172	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-intron	ENST00000547172	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-intron	ENST00000547172	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-intron	ENST00000547172	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
intron-intron	ENST00000547172	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000548826	ENST00000552285		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000548826	ENST00000315970		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000548826	ENST00000439210		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
Frame-shit	ENST00000548826	ENST00000389146		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548826	ENST00000413095		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548826	ENST00000551035		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548826	ENST00000435406		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548826	ENST00000257966		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000548826	ENST00000389142		TCGA	LD	GBM	TCGA-19-5960-01A	NELL2	chr12	45269008	-	OS9	chr12	58109543	+
3UTR-intron	ENST00000317357	ENST00000369066		TCGA	LD	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106808726	+
3UTR-intron	ENST00000317357	ENST00000535438		TCGA	LD	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106808726	+
3UTR-intron	ENST00000317357	ENST00000487681		TCGA	LD	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106808726	+
3UTR-intron	ENST00000494935	ENST00000369066		TCGA	LD	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106808726	+
3UTR-intron	ENST00000494935	ENST00000535438		TCGA	LD	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106808726	+
3UTR-intron	ENST00000494935	ENST00000487681		TCGA	LD	GBM	TCGA-19-5960-01A	SOBP	chr6	107956673	+	AIM1	chr6	106808726	+
5CDS-intron	ENST00000543727	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000543727	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000550559	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000550559	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000548851	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000548851	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000454289	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000454289	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000540550	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000540550	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000323833	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000323833	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000350762	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
5CDS-intron	ENST00000350762	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
3UTR-intron	ENST00000497617	ENST00000256151		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
3UTR-intron	ENST00000497617	ENST00000548126		TCGA	LD	GBM	TCGA-19-5960-01A	TSFM	chr12	58180945	+	CCDC59	chr12	82617473	-
In-frame	ENST00000332592	ENST00000377049		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
Frame-shit	ENST00000332592	ENST00000320498		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
Frame-shit	ENST00000478244	ENST00000377049		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
Frame-shit	ENST00000478244	ENST00000320498		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
Frame-shit	ENST00000375399	ENST00000377049		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
Frame-shit	ENST00000375399	ENST00000320498		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
intron-3CDS	ENST00000460318	ENST00000377049		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
intron-3CDS	ENST00000460318	ENST00000320498		TCGA	LD	GBM	TCGA-19-A60I-01A	DCUN1D2	chr13	114128439	-	CORT	chr1	10511434	+
5CDS-5UTR	ENST00000455089	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
5CDS-5UTR	ENST00000455089	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000342916	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000342916	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000344576	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000344576	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000420316	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000420316	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
5CDS-5UTR	ENST00000275493	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
5CDS-5UTR	ENST00000275493	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000442591	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000442591	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000463948	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
intron-5UTR	ENST00000463948	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
5CDS-5UTR	ENST00000454757	ENST00000402886		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
5CDS-5UTR	ENST00000454757	ENST00000338863		TCGA	LD	GBM	TCGA-19-A60I-01A	EGFR	chr7	55268106	+	TEAD3	chr6	35454488	-
In-frame	ENST00000269051	ENST00000302823		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000269051	ENST00000295854		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000269051	ENST00000472206		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
5CDS-intron	ENST00000269051	ENST00000487393		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
5CDS-5UTR	ENST00000269051	ENST00000427473		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000538145	ENST00000302823		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000538145	ENST00000295854		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000538145	ENST00000472206		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
5CDS-intron	ENST00000538145	ENST00000487393		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
5CDS-5UTR	ENST00000538145	ENST00000427473		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000536287	ENST00000302823		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000536287	ENST00000295854		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
In-frame	ENST00000536287	ENST00000472206		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
5CDS-intron	ENST00000536287	ENST00000487393		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
5CDS-5UTR	ENST00000536287	ENST00000427473		TCGA	LD	GBM	TCGA-19-A60I-01A	RHBDL3	chr17	30625223	+	CTLA4	chr2	204735309	+
intron-3CDS	ENST00000395535	ENST00000490799		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000395535	ENST00000394602		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000395535	ENST00000355574		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000352861	ENST00000490799		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000352861	ENST00000394602		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000352861	ENST00000355574		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000415949	ENST00000490799		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000415949	ENST00000394602		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000415949	ENST00000355574		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000450622	ENST00000490799		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000450622	ENST00000394602		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
intron-3CDS	ENST00000450622	ENST00000355574		TCGA	LD	GBM	TCGA-19-A60I-01A	SEC61G	chr7	54820019	-	SLC26A8	chr6	35965696	-
5CDS-3UTR	ENST00000306279	ENST00000459775		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
5CDS-3UTR	ENST00000306279	ENST00000450066		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
5CDS-3UTR	ENST00000306279	ENST00000409025		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
5CDS-3UTR	ENST00000306279	ENST00000409470		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
5CDS-3UTR	ENST00000306279	ENST00000323701		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
5CDS-3UTR	ENST00000306279	ENST00000409766		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
3UTR-3UTR	ENST00000463422	ENST00000459775		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
3UTR-3UTR	ENST00000463422	ENST00000450066		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
3UTR-3UTR	ENST00000463422	ENST00000409025		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
3UTR-3UTR	ENST00000463422	ENST00000409470		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
3UTR-3UTR	ENST00000463422	ENST00000323701		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
3UTR-3UTR	ENST00000463422	ENST00000409766		TCGA	LD	GBM	TCGA-19-A6J4-01A	ATOH8	chr2	85982080	+	USP39	chr2	85846343	+
Frame-shit	ENST00000368491	ENST00000352896		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000368491	ENST00000368475		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000368491	ENST00000338891		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000368491	ENST00000521531		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5CDS-intron	ENST00000368491	ENST00000522284		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000368488	ENST00000352896		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
In-frame	ENST00000368488	ENST00000368475		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000368488	ENST00000338891		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
In-frame	ENST00000368488	ENST00000521531		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5CDS-intron	ENST00000368488	ENST00000522284		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000360290	ENST00000352896		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000360290	ENST00000368475		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000360290	ENST00000338891		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5UTR-3CDS	ENST00000360290	ENST00000521531		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5UTR-intron	ENST00000360290	ENST00000522284		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000392500	ENST00000352896		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
In-frame	ENST00000392500	ENST00000368475		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000392500	ENST00000338891		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
In-frame	ENST00000392500	ENST00000521531		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5CDS-intron	ENST00000392500	ENST00000522284		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000419517	ENST00000352896		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000419517	ENST00000368475		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000419517	ENST00000338891		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000419517	ENST00000521531		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
5CDS-intron	ENST00000419517	ENST00000522284		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000472713	ENST00000352896		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000472713	ENST00000368475		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000472713	ENST00000338891		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
intron-3CDS	ENST00000472713	ENST00000521531		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
intron-intron	ENST00000472713	ENST00000522284		TCGA	LD	GBM	TCGA-19-A6J4-01A	CEP85L	chr6	118953616	-	FAM184A	chr6	119281349	-
Frame-shit	ENST00000481110	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000481110	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000481110	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000481110	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000481110	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000481110	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000481110	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000481110	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000440486	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000440486	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000412135	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000412135	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000340107	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000340107	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000260795	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000260795	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
In-frame	ENST00000352904	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
5CDS-intron	ENST00000352904	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000298834		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000426438		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000314845		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000533727		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000534300		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000458649		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-3CDS	ENST00000474521	ENST00000528950		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
intron-intron	ENST00000474521	ENST00000529963		TCGA	LD	GBM	TCGA-19-A6J4-01A	FGFR3	chr4	1808661	+	AMBRA1	chr11	46439602	-
Frame-shit	ENST00000392562	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000392562	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392562	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392562	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392562	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392562	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000316804	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000316804	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316804	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316804	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316804	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316804	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000316615	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000316615	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316615	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316615	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316615	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000316615	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000392563	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000392563	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392563	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392563	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392563	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392563	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000392564	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000392564	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392564	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392564	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392564	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000392564	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000578961	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
Frame-shit	ENST00000578961	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000578961	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000578961	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000578961	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
5CDS-intron	ENST00000578961	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
intron-3CDS	ENST00000462266	ENST00000296444		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
intron-3CDS	ENST00000462266	ENST00000444115		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
intron-intron	ENST00000462266	ENST00000426002		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
intron-intron	ENST00000462266	ENST00000465449		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
intron-intron	ENST00000462266	ENST00000442747		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
intron-intron	ENST00000462266	ENST00000443308		TCGA	LD	GBM	TCGA-19-A6J4-01A	GRB2	chr17	73389632	-	SHISA5	chr3	48520666	-
3UTR-3CDS	ENST00000525037	ENST00000354329		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
3UTR-intron	ENST00000525037	ENST00000529578		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
3UTR-intron	ENST00000525037	ENST00000533112		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
3UTR-intron	ENST00000525037	ENST00000531253		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
3UTR-intron	ENST00000525037	ENST00000527372		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
Frame-shit	ENST00000530173	ENST00000354329		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000530173	ENST00000529578		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000530173	ENST00000533112		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000530173	ENST00000531253		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000530173	ENST00000527372		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
Frame-shit	ENST00000322157	ENST00000354329		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000322157	ENST00000529578		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000322157	ENST00000533112		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000322157	ENST00000531253		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000322157	ENST00000527372		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
Frame-shit	ENST00000544660	ENST00000354329		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000544660	ENST00000529578		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000544660	ENST00000533112		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000544660	ENST00000531253		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5CDS-intron	ENST00000544660	ENST00000527372		TCGA	LD	GBM	TCGA-19-A6J4-01A	NPEPPS	chr17	45623359	+	MYO18A	chr17	27449271	-
5UTR-3CDS	ENST00000418115	ENST00000406590		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000418115	ENST00000570646		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000418115	ENST00000458134		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000418115	ENST00000219700		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000418115	ENST00000575120		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000418115	ENST00000574594		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000418115	ENST00000398595		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000418115	ENST00000414777		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000454011	ENST00000406590		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000454011	ENST00000570646		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000454011	ENST00000458134		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000454011	ENST00000219700		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000454011	ENST00000575120		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000454011	ENST00000574594		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000454011	ENST00000398595		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000454011	ENST00000414777		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000422781	ENST00000406590		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000422781	ENST00000570646		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000422781	ENST00000458134		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000422781	ENST00000219700		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000422781	ENST00000575120		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000422781	ENST00000574594		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000422781	ENST00000398595		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-intron	ENST00000422781	ENST00000414777		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-3CDS	ENST00000265538	ENST00000406590		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-3CDS	ENST00000265538	ENST00000570646		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-3CDS	ENST00000265538	ENST00000458134		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-3CDS	ENST00000265538	ENST00000219700		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-3CDS	ENST00000265538	ENST00000575120		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-intron	ENST00000265538	ENST00000574594		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-intron	ENST00000265538	ENST00000398595		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
intron-intron	ENST00000265538	ENST00000414777		TCGA	LD	GBM	TCGA-19-A6J4-01A	RHOA	chr3	49449253	-	HMOX2	chr16	4559413	+
5UTR-3CDS	ENST00000392038	ENST00000255608		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
5UTR-5UTR	ENST00000392038	ENST00000590646		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
intron-3CDS	ENST00000424901	ENST00000255608		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
intron-5UTR	ENST00000424901	ENST00000590646		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
intron-3CDS	ENST00000311278	ENST00000255608		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
intron-5UTR	ENST00000311278	ENST00000590646		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
5UTR-3CDS	ENST00000579047	ENST00000255608		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
5UTR-5UTR	ENST00000579047	ENST00000590646		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
intron-3CDS	ENST00000581582	ENST00000255608		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
intron-5UTR	ENST00000581582	ENST00000590646		TCGA	LD	GBM	TCGA-19-A6J5-01A	AKT2	chr19	40791088	-	BTBD2	chr19	1997462	-
Frame-shit	ENST00000308448	ENST00000298784		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
Frame-shit	ENST00000308448	ENST00000298786		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
In-frame	ENST00000328142	ENST00000298784		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
In-frame	ENST00000328142	ENST00000298786		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
In-frame	ENST00000400215	ENST00000298784		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
In-frame	ENST00000400215	ENST00000298786		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
Frame-shit	ENST00000541004	ENST00000298784		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
Frame-shit	ENST00000541004	ENST00000298786		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
intron-3CDS	ENST00000495903	ENST00000298784		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
intron-3CDS	ENST00000495903	ENST00000298786		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATAD1	chr10	89544227	-	FAM35A	chr10	88930235	+
5UTR-5UTR	ENST00000327245	ENST00000523767		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATP10B	chr5	160278948	-	NDST1	chr5	149900430	+
5UTR-5UTR	ENST00000327245	ENST00000261797		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATP10B	chr5	160278948	-	NDST1	chr5	149900430	+
5UTR-intron	ENST00000327245	ENST00000521752		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATP10B	chr5	160278948	-	NDST1	chr5	149900430	+
5UTR-5UTR	ENST00000518411	ENST00000523767		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATP10B	chr5	160278948	-	NDST1	chr5	149900430	+
5UTR-5UTR	ENST00000518411	ENST00000261797		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATP10B	chr5	160278948	-	NDST1	chr5	149900430	+
5UTR-intron	ENST00000518411	ENST00000521752		TCGA	LD	GBM	TCGA-19-A6J5-01A	ATP10B	chr5	160278948	-	NDST1	chr5	149900430	+
Frame-shit	ENST00000333229	ENST00000322088		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
Frame-shit	ENST00000333229	ENST00000444322		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000333229	ENST00000477989		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000333229	ENST00000462990		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000333229	ENST00000473455		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
Frame-shit	ENST00000342449	ENST00000322088		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
Frame-shit	ENST00000342449	ENST00000444322		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000342449	ENST00000477989		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000342449	ENST00000462990		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000342449	ENST00000473455		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
Frame-shit	ENST00000380800	ENST00000322088		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
Frame-shit	ENST00000380800	ENST00000444322		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000380800	ENST00000477989		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000380800	ENST00000462990		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-intron	ENST00000380800	ENST00000473455		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-3CDS	ENST00000341322	ENST00000322088		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-3CDS	ENST00000341322	ENST00000444322		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-intron	ENST00000341322	ENST00000477989		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-intron	ENST00000341322	ENST00000462990		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-intron	ENST00000341322	ENST00000473455		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-3CDS	ENST00000470108	ENST00000322088		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-3CDS	ENST00000470108	ENST00000444322		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-intron	ENST00000470108	ENST00000477989		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-intron	ENST00000470108	ENST00000462990		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
intron-intron	ENST00000470108	ENST00000473455		TCGA	LD	GBM	TCGA-19-A6J5-01A	BRWD1	chr21	40636386	-	PPP2R1A	chr19	52719032	+
5CDS-5UTR	ENST00000361866	ENST00000588030		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000589660		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000588090		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000591935		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000589710		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000588230		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000413636		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000586472		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000589686		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000444172		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000587323		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000320936		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000587896		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000589235		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000585630		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-5UTR	ENST00000361866	ENST00000586773		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
5CDS-intron	ENST00000361866	ENST00000590188		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000588030		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000589660		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000588090		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000591935		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000589710		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000588230		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000413636		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000586472		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000589686		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000444172		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000587323		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000320936		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000587896		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000589235		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000585630		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-5UTR	ENST00000498614	ENST00000586773		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
intron-intron	ENST00000498614	ENST00000590188		TCGA	LD	GBM	TCGA-19-A6J5-01A	COL6A1	chr21	47401861	+	CIRBP	chr19	1270927	+
In-frame	ENST00000321949	ENST00000348943		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000321949	ENST00000325495		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
5CDS-intron	ENST00000321949	ENST00000602219		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000338797	ENST00000348943		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000338797	ENST00000325495		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
5CDS-intron	ENST00000338797	ENST00000602219		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000594658	ENST00000348943		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000594658	ENST00000325495		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
5CDS-intron	ENST00000594658	ENST00000602219		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000601916	ENST00000348943		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
In-frame	ENST00000601916	ENST00000325495		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
5CDS-intron	ENST00000601916	ENST00000602219		TCGA	LD	GBM	TCGA-19-A6J5-01A	CRTC1	chr19	18860685	+	HNRNPM	chr19	8548042	+
Frame-shit	ENST00000348943	ENST00000262971		TCGA	LD	GBM	TCGA-19-A6J5-01A	HNRNPM	chr19	8539128	+	PIAS4	chr19	4037372	+
5CDS-intron	ENST00000348943	ENST00000596144		TCGA	LD	GBM	TCGA-19-A6J5-01A	HNRNPM	chr19	8539128	+	PIAS4	chr19	4037372	+
Frame-shit	ENST00000325495	ENST00000262971		TCGA	LD	GBM	TCGA-19-A6J5-01A	HNRNPM	chr19	8539128	+	PIAS4	chr19	4037372	+
5CDS-intron	ENST00000325495	ENST00000596144		TCGA	LD	GBM	TCGA-19-A6J5-01A	HNRNPM	chr19	8539128	+	PIAS4	chr19	4037372	+
intron-3CDS	ENST00000602219	ENST00000262971		TCGA	LD	GBM	TCGA-19-A6J5-01A	HNRNPM	chr19	8539128	+	PIAS4	chr19	4037372	+
intron-intron	ENST00000602219	ENST00000596144		TCGA	LD	GBM	TCGA-19-A6J5-01A	HNRNPM	chr19	8539128	+	PIAS4	chr19	4037372	+
5CDS-5UTR	ENST00000251203	ENST00000246554		TCGA	LD	GBM	TCGA-19-A6J5-01A	PBX4	chr19	19710101	-	COX6B1	chr19	36142135	+
5CDS-5UTR	ENST00000251203	ENST00000592141		TCGA	LD	GBM	TCGA-19-A6J5-01A	PBX4	chr19	19710101	-	COX6B1	chr19	36142135	+
5CDS-5UTR	ENST00000251203	ENST00000392201		TCGA	LD	GBM	TCGA-19-A6J5-01A	PBX4	chr19	19710101	-	COX6B1	chr19	36142135	+
5CDS-intron	ENST00000521381	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521381	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521381	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521381	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-5UTR	ENST00000521381	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521381	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521657	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521657	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521657	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521657	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-5UTR	ENST00000521657	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000521657	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000517643	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000517643	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000517643	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000517643	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-5UTR	ENST00000517643	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000517643	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000274335	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000274335	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000274335	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000274335	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-5UTR	ENST00000274335	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000274335	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000396611	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000396611	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000396611	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000396611	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-5UTR	ENST00000396611	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-intron	ENST00000396611	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000320694	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000320694	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000320694	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000320694	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-5UTR	ENST00000320694	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000320694	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000336483	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000336483	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000336483	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000336483	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-5UTR	ENST00000336483	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000336483	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000523872	ENST00000538184		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000523872	ENST00000502274		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000523872	ENST00000515425		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000523872	ENST00000512049		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-5UTR	ENST00000523872	ENST00000394358		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
intron-intron	ENST00000523872	ENST00000513340		TCGA	LD	GBM	TCGA-19-A6J5-01A	PIK3R1	chr5	67522837	+	SH3TC2	chr5	148431803	-
5CDS-5UTR	ENST00000322088	ENST00000600412		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-5UTR	ENST00000322088	ENST00000396424		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-intron	ENST00000322088	ENST00000598440		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-5UTR	ENST00000444322	ENST00000600412		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-5UTR	ENST00000444322	ENST00000396424		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-intron	ENST00000444322	ENST00000598440		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
intron-5UTR	ENST00000477989	ENST00000600412		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
intron-5UTR	ENST00000477989	ENST00000396424		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
intron-intron	ENST00000477989	ENST00000598440		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-5UTR	ENST00000462990	ENST00000600412		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-5UTR	ENST00000462990	ENST00000396424		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-intron	ENST00000462990	ENST00000598440		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
intron-5UTR	ENST00000473455	ENST00000600412		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
intron-5UTR	ENST00000473455	ENST00000396424		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
intron-intron	ENST00000473455	ENST00000598440		TCGA	LD	GBM	TCGA-19-A6J5-01A	PPP2R1A	chr19	52716363	+	ZNF665	chr19	53669600	-
5CDS-5UTR	ENST00000393386	ENST00000397752		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393386	ENST00000318493		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000436117		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000495962		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000539704		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000397752		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000318493		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000436117		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000495962		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000539704		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000397752		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000318493		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000436117		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000495962		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000539704		TCGA	LD	GBM	TCGA-19-A6J5-01A	PTPRZ1	chr7	121568275	+	MET	chr7	116339125	+
intron-5UTR	ENST00000595535	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000595535	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000595535	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000595535	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000595535	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-5UTR	ENST00000352632	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000352632	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000352632	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000352632	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000352632	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-5UTR	ENST00000344104	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000344104	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000344104	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000344104	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000344104	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-5UTR	ENST00000338932	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000338932	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000338932	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000338932	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000338932	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-5UTR	ENST00000598249	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000598249	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000598249	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000598249	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
5UTR-intron	ENST00000598249	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-5UTR	ENST00000392025	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392025	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392025	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392025	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392025	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-5UTR	ENST00000392023	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392023	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392023	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392023	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000392023	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-5UTR	ENST00000593816	ENST00000392038		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000593816	ENST00000424901		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000593816	ENST00000311278		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000593816	ENST00000579047		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-intron	ENST00000593816	ENST00000581582		TCGA	LD	GBM	TCGA-19-A6J5-01A	SPTBN4	chr19	40973212	+	AKT2	chr19	40771258	-
intron-3CDS	ENST00000342944	ENST00000354232		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF254	chr19	24270139	+	ETFB	chr19	51857562	-
intron-3CDS	ENST00000342944	ENST00000309244		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF254	chr19	24270139	+	ETFB	chr19	51857562	-
In-frame	ENST00000339642	ENST00000354232		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF254	chr19	24270139	+	ETFB	chr19	51857562	-
In-frame	ENST00000339642	ENST00000309244		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF254	chr19	24270139	+	ETFB	chr19	51857562	-
In-frame	ENST00000357002	ENST00000354232		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF254	chr19	24270139	+	ETFB	chr19	51857562	-
In-frame	ENST00000357002	ENST00000309244		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF254	chr19	24270139	+	ETFB	chr19	51857562	-
intron-3CDS	ENST00000598446	ENST00000361866		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
intron-intron	ENST00000598446	ENST00000498614		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
In-frame	ENST00000594154	ENST00000361866		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
5CDS-intron	ENST00000594154	ENST00000498614		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
Frame-shit	ENST00000221315	ENST00000361866		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
5CDS-intron	ENST00000221315	ENST00000498614		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
Frame-shit	ENST00000597273	ENST00000361866		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
5CDS-intron	ENST00000597273	ENST00000498614		TCGA	LD	GBM	TCGA-19-A6J5-01A	ZNF432	chr19	52550107	-	COL6A1	chr21	47404183	+
intron-3CDS	ENST00000518347	ENST00000522684		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000535192		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000519465		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000517887		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000521059		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000395218		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000538769		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000340930		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000519419		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518347	ENST00000430260		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518347	ENST00000519881		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518347	ENST00000520892		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518347	ENST00000519635		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518347	ENST00000517712		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3UTR	ENST00000518347	ENST00000522950		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518347	ENST00000520151		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000522684		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
In-frame	ENST00000424248	ENST00000535192		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000519465		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000517887		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000521059		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000395218		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
In-frame	ENST00000424248	ENST00000538769		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000340930		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000519419		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000424248	ENST00000430260		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000424248	ENST00000519881		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000424248	ENST00000520892		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000424248	ENST00000519635		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000424248	ENST00000517712		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-3UTR	ENST00000424248	ENST00000522950		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000424248	ENST00000520151		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000522684		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
In-frame	ENST00000262585	ENST00000535192		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000519465		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000517887		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000521059		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000395218		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
In-frame	ENST00000262585	ENST00000538769		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000340930		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000519419		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000262585	ENST00000430260		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000262585	ENST00000519881		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000262585	ENST00000520892		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000262585	ENST00000519635		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000262585	ENST00000517712		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-3UTR	ENST00000262585	ENST00000522950		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000262585	ENST00000520151		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000522684		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
In-frame	ENST00000519811	ENST00000535192		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000519465		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000517887		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000521059		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000395218		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
In-frame	ENST00000519811	ENST00000538769		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000340930		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000519419		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
Frame-shit	ENST00000519811	ENST00000430260		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000519811	ENST00000519881		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000519811	ENST00000520892		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000519811	ENST00000519635		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000519811	ENST00000517712		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-3UTR	ENST00000519811	ENST00000522950		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5CDS-intron	ENST00000519811	ENST00000520151		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000522684		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000535192		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000519465		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000517887		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000521059		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000395218		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000538769		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000340930		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000519419		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000518806	ENST00000430260		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518806	ENST00000519881		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518806	ENST00000520892		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518806	ENST00000519635		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518806	ENST00000517712		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3UTR	ENST00000518806	ENST00000522950		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000518806	ENST00000520151		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000522684		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000535192		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000519465		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000517887		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000521059		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000395218		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000538769		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000340930		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000519419		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3CDS	ENST00000523308	ENST00000430260		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000523308	ENST00000519881		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000523308	ENST00000520892		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000523308	ENST00000519635		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000523308	ENST00000517712		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-3UTR	ENST00000523308	ENST00000522950		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
intron-intron	ENST00000523308	ENST00000520151		TCGA	LD	GBM	TCGA-26-5133-01A	DENND3	chr8	142154358	+	PTK2	chr8	141669777	-
5UTR-3CDS	ENST00000522684	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000535192	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000519465	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000517887	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000521059	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000395218	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000538769	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000340930	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000519419	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000430260	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000519881	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000520892	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000519635	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000517712	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000522950	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000520151	ENST00000518347		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000424248		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000262585		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000519811		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000518806		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000523308		TCGA	LD	GBM	TCGA-26-5133-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5CDS-5UTR	ENST00000566228	ENST00000246841		TCGA	LD	GBM	TCGA-26-5133-01A	SNX29	chr16	12371893	+	FLRT1	chr11	63870666	+
5CDS-5UTR	ENST00000323433	ENST00000246841		TCGA	LD	GBM	TCGA-26-5133-01A	SNX29	chr16	12371893	+	FLRT1	chr11	63870666	+
5CDS-5UTR	ENST00000306030	ENST00000246841		TCGA	LD	GBM	TCGA-26-5133-01A	SNX29	chr16	12371893	+	FLRT1	chr11	63870666	+
intron-5UTR	ENST00000568359	ENST00000246841		TCGA	LD	GBM	TCGA-26-5133-01A	SNX29	chr16	12371893	+	FLRT1	chr11	63870666	+
Frame-shit	ENST00000216160	ENST00000404072		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
5CDS-intron	ENST00000216160	ENST00000468288		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
5CDS-intron	ENST00000216160	ENST00000356976		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
Frame-shit	ENST00000331454	ENST00000404072		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
5CDS-intron	ENST00000331454	ENST00000468288		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
5CDS-intron	ENST00000331454	ENST00000356976		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
intron-3CDS	ENST00000488859	ENST00000404072		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
intron-intron	ENST00000488859	ENST00000468288		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
intron-intron	ENST00000488859	ENST00000356976		TCGA	LD	GBM	TCGA-26-5133-01A	TAB1	chr22	39817976	+	PICK1	chr22	38467689	+
Frame-shit	ENST00000306888	ENST00000441222		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
Frame-shit	ENST00000306888	ENST00000451218		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
Frame-shit	ENST00000306888	ENST00000508499		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
5CDS-intron	ENST00000306888	ENST00000504078		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
In-frame	ENST00000263925	ENST00000441222		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
In-frame	ENST00000263925	ENST00000451218		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
In-frame	ENST00000263925	ENST00000508499		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
5CDS-intron	ENST00000263925	ENST00000504078		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
intron-3CDS	ENST00000504605	ENST00000441222		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
intron-3CDS	ENST00000504605	ENST00000451218		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
intron-3CDS	ENST00000504605	ENST00000508499		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
intron-intron	ENST00000504605	ENST00000504078		TCGA	LD	GBM	TCGA-26-5134-01A	LNX1	chr4	54373484	-	USP46	chr4	53494330	-
In-frame	ENST00000381295	ENST00000229179		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000381295	ENST00000378905		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000381295	ENST00000539906		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000381295	ENST00000401003		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000346134	ENST00000229179		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000346134	ENST00000378905		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000346134	ENST00000539906		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000346134	ENST00000401003		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000349598	ENST00000229179		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000349598	ENST00000378905		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
In-frame	ENST00000349598	ENST00000539906		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000349598	ENST00000401003		TCGA	LD	GBM	TCGA-26-5135-01A	EXOC1	chr4	56726707	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000256544	ENST00000393245		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
5UTR-3CDS	ENST00000256544	ENST00000265388		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
5UTR-3CDS	ENST00000256544	ENST00000482320		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
5UTR-3CDS	ENST00000256544	ENST00000471234		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
5UTR-3CDS	ENST00000256544	ENST00000471166		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
intron-3CDS	ENST00000560915	ENST00000393245		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
intron-3CDS	ENST00000560915	ENST00000265388		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
intron-3CDS	ENST00000560915	ENST00000482320		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
intron-3CDS	ENST00000560915	ENST00000471234		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
intron-3CDS	ENST00000560915	ENST00000471166		TCGA	LD	GBM	TCGA-26-5135-01A	KATNBL1	chr15	34502152	-	TNPO3	chr7	128624313	-
5CDS-5UTR	ENST00000544494	ENST00000334482		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000544494	ENST00000301522		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000544494	ENST00000435703		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000380339	ENST00000334482		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000380339	ENST00000301522		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000380339	ENST00000435703		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000393261	ENST00000334482		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000393261	ENST00000301522		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000393261	ENST00000435703		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000587955	ENST00000334482		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000587955	ENST00000301522		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
5CDS-5UTR	ENST00000587955	ENST00000435703		TCGA	LD	GBM	TCGA-26-5136-01B	FBXW9	chr19	12805408	-	PRDX2	chr19	12912084	-
In-frame	ENST00000254323	ENST00000368309		TCGA	LD	GBM	TCGA-26-5139-01A	ZSWIM4	chr19	13920034	+	UBQLN4	chr1	156012704	-
5CDS-intron	ENST00000254323	ENST00000472638		TCGA	LD	GBM	TCGA-26-5139-01A	ZSWIM4	chr19	13920034	+	UBQLN4	chr1	156012704	-
In-frame	ENST00000440752	ENST00000368309		TCGA	LD	GBM	TCGA-26-5139-01A	ZSWIM4	chr19	13920034	+	UBQLN4	chr1	156012704	-
5CDS-intron	ENST00000440752	ENST00000472638		TCGA	LD	GBM	TCGA-26-5139-01A	ZSWIM4	chr19	13920034	+	UBQLN4	chr1	156012704	-
Frame-shit	ENST00000265748	ENST00000403058		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
Frame-shit	ENST00000265748	ENST00000518318		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000265748	ENST00000517348		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000265748	ENST00000559001		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000265748	ENST00000464276		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
Frame-shit	ENST00000396068	ENST00000403058		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
Frame-shit	ENST00000396068	ENST00000518318		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000396068	ENST00000517348		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000396068	ENST00000559001		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000396068	ENST00000464276		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
intron-3CDS	ENST00000495714	ENST00000403058		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
intron-3CDS	ENST00000495714	ENST00000518318		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
intron-intron	ENST00000495714	ENST00000517348		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
intron-intron	ENST00000495714	ENST00000559001		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
intron-intron	ENST00000495714	ENST00000464276		TCGA	LD	GBM	TCGA-26-A7UX-01B	ANLN	chr7	36463552	+	POU6F2	chr7	39500146	+
Frame-shit	ENST00000254770	ENST00000285279		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
Frame-shit	ENST00000254770	ENST00000433959		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
Frame-shit	ENST00000254770	ENST00000545390		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000428648		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000428097		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000418904		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000254770	ENST00000454227		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000453256		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000427700		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000471168		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000486376	ENST00000285279		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000486376	ENST00000433959		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000486376	ENST00000545390		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000428648		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000428097		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000418904		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-intron	ENST00000486376	ENST00000454227		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000453256		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000427700		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000471168		TCGA	LD	GBM	TCGA-26-A7UX-01B	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5UTR-3CDS	ENST00000304425	ENST00000396081		TCGA	LD	GBM	TCGA-26-A7UX-01B	MIR31HG	chr9	21559488	-	HERPUD2	chr7	35712888	-
5UTR-3CDS	ENST00000304425	ENST00000311350		TCGA	LD	GBM	TCGA-26-A7UX-01B	MIR31HG	chr9	21559488	-	HERPUD2	chr7	35712888	-
5UTR-intron	ENST00000304425	ENST00000426180		TCGA	LD	GBM	TCGA-26-A7UX-01B	MIR31HG	chr9	21559488	-	HERPUD2	chr7	35712888	-
Frame-shit	ENST00000403058	ENST00000535891		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000403058	ENST00000258749		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000403058	ENST00000431169		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000403058	ENST00000538464		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
5CDS-5UTR	ENST00000403058	ENST00000491444		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000518318	ENST00000535891		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000518318	ENST00000258749		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000518318	ENST00000431169		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000518318	ENST00000538464		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
5CDS-5UTR	ENST00000518318	ENST00000491444		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000517348	ENST00000535891		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000517348	ENST00000258749		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000517348	ENST00000431169		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000517348	ENST00000538464		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-5UTR	ENST00000517348	ENST00000491444		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000559001	ENST00000535891		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000559001	ENST00000258749		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000559001	ENST00000431169		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000559001	ENST00000538464		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
5CDS-5UTR	ENST00000559001	ENST00000491444		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000464276	ENST00000535891		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000464276	ENST00000258749		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000464276	ENST00000431169		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-3CDS	ENST00000464276	ENST00000538464		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
intron-5UTR	ENST00000464276	ENST00000491444		TCGA	LD	GBM	TCGA-26-A7UX-01B	POU6F2	chr7	39503983	+	AOAH	chr7	36571950	-
Frame-shit	ENST00000288828	ENST00000405863		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000288828	ENST00000602349		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000288828	ENST00000497400		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
Frame-shit	ENST00000401525	ENST00000405863		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000401525	ENST00000602349		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000401525	ENST00000497400		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
Frame-shit	ENST00000404704	ENST00000405863		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000404704	ENST00000602349		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000404704	ENST00000497400		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
intron-3CDS	ENST00000485854	ENST00000405863		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
intron-5UTR	ENST00000485854	ENST00000602349		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
intron-3UTR	ENST00000485854	ENST00000497400		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
Frame-shit	ENST00000382384	ENST00000405863		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000382384	ENST00000602349		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000382384	ENST00000497400		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
Frame-shit	ENST00000484262	ENST00000405863		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000484262	ENST00000602349		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000484262	ENST00000497400		TCGA	LD	GBM	TCGA-26-A7UX-01B	WIPI2	chr7	5267842	+	NXPH1	chr7	8790638	+
3UTR-3CDS	ENST00000411630	ENST00000494664		TCGA	LD	GBM	TCGA-27-1830-01A	DANCR	chr4	53579126	+	TIMMDC1	chr3	119219542	+
3UTR-intron	ENST00000411630	ENST00000493694		TCGA	LD	GBM	TCGA-27-1830-01A	DANCR	chr4	53579126	+	TIMMDC1	chr3	119219542	+
5UTR-3CDS	ENST00000409598	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000409598	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000409598	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000409598	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-3CDS	ENST00000424281	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000424281	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000424281	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000424281	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-3CDS	ENST00000304527	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000304527	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000304527	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000304527	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-3CDS	ENST00000455740	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000455740	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000455740	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000455740	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-3CDS	ENST00000409252	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000409252	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000409252	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000409252	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-3CDS	ENST00000514152	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000514152	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000514152	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000514152	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
intron-3CDS	ENST00000427414	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
intron-5UTR	ENST00000427414	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
intron-intron	ENST00000427414	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
intron-5UTR	ENST00000427414	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-3CDS	ENST00000604030	ENST00000506646		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000604030	ENST00000507078		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-intron	ENST00000604030	ENST00000338977		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5UTR-5UTR	ENST00000604030	ENST00000511833		TCGA	LD	GBM	TCGA-27-1830-01A	SH3D19	chr4	152147199	-	ZNF721	chr4	466490	-
5CDS-intron	ENST00000302538	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
5CDS-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
5CDS-intron	ENST00000302538	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
5CDS-intron	ENST00000302538	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
5CDS-intron	ENST00000302538	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000544583	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000572441	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000574437	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000291107	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000543210	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000536794	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000573895	ENST00000264335		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	GBM	TCGA-27-1831-01A	ABR	chr17	1082961	-	YWHAE	chr17	1273035	-
In-frame	ENST00000280481	ENST00000379480		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
In-frame	ENST00000280481	ENST00000379477		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
In-frame	ENST00000280481	ENST00000430347		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
5CDS-intron	ENST00000280481	ENST00000239852		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
intron-3CDS	ENST00000482551	ENST00000379480		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
intron-3CDS	ENST00000482551	ENST00000379477		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
intron-3CDS	ENST00000482551	ENST00000430347		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
intron-intron	ENST00000482551	ENST00000239852		TCGA	LD	GBM	TCGA-27-1831-01A	FREM2	chr13	39438743	+	MTRF1	chr13	41808143	-
5UTR-5UTR	ENST00000472748	ENST00000338586		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000338515		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000367171		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000367169		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000539706		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000339876		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000367170		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000360049		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000367172		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000403080		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000404076		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000401399		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000472748	ENST00000404907		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-intron	ENST00000472748	ENST00000513543		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-intron	ENST00000472748	ENST00000495396		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000338586		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000338515		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000367171		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000367169		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000539706		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000339876		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000367170		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000360049		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000367172		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000403080		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000404076		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000401399		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000422440	ENST00000404907		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-intron	ENST00000422440	ENST00000513543		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-intron	ENST00000422440	ENST00000495396		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000338586		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000338515		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000367171		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000367169		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000539706		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000339876		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000367170		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000360049		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000367172		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000403080		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000404076		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000401399		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-5UTR	ENST00000392592	ENST00000404907		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-intron	ENST00000392592	ENST00000513543		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5UTR-intron	ENST00000392592	ENST00000495396		TCGA	LD	GBM	TCGA-27-1831-01A	SLC25A12	chr2	172749715	-	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000371759	ENST00000242719		TCGA	LD	GBM	TCGA-27-1832-01A	C1orf185	chr1	51584473	+	RNF11	chr1	51702406	+
5CDS-3UTR	ENST00000371759	ENST00000494873		TCGA	LD	GBM	TCGA-27-1832-01A	C1orf185	chr1	51584473	+	RNF11	chr1	51702406	+
5CDS-5UTR	ENST00000467127	ENST00000242719		TCGA	LD	GBM	TCGA-27-1832-01A	C1orf185	chr1	51584473	+	RNF11	chr1	51702406	+
5CDS-3UTR	ENST00000467127	ENST00000494873		TCGA	LD	GBM	TCGA-27-1832-01A	C1orf185	chr1	51584473	+	RNF11	chr1	51702406	+
3UTR-5UTR	ENST00000474016	ENST00000242719		TCGA	LD	GBM	TCGA-27-1832-01A	C1orf185	chr1	51584473	+	RNF11	chr1	51702406	+
3UTR-3UTR	ENST00000474016	ENST00000494873		TCGA	LD	GBM	TCGA-27-1832-01A	C1orf185	chr1	51584473	+	RNF11	chr1	51702406	+
Frame-shit	ENST00000371730	ENST00000371759		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
5CDS-5UTR	ENST00000371730	ENST00000467127		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
5CDS-3UTR	ENST00000371730	ENST00000474016		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
Frame-shit	ENST00000371733	ENST00000371759		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
5CDS-5UTR	ENST00000371733	ENST00000467127		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
5CDS-3UTR	ENST00000371733	ENST00000474016		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
intron-3CDS	ENST00000396122	ENST00000371759		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
intron-5UTR	ENST00000396122	ENST00000467127		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
intron-3UTR	ENST00000396122	ENST00000474016		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
intron-3CDS	ENST00000493793	ENST00000371759		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
intron-5UTR	ENST00000493793	ENST00000467127		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
intron-3UTR	ENST00000493793	ENST00000474016		TCGA	LD	GBM	TCGA-27-1832-01A	EPS15	chr1	51984871	-	C1orf185	chr1	51578136	+
5CDS-3UTR	ENST00000334370	ENST00000473762		TCGA	LD	GBM	TCGA-27-1834-01A	MEGF8	chr19	42848985	+	CEACAMP3	chr19	42110519	+
5CDS-3UTR	ENST00000251268	ENST00000473762		TCGA	LD	GBM	TCGA-27-1834-01A	MEGF8	chr19	42848985	+	CEACAMP3	chr19	42110519	+
intron-3UTR	ENST00000378073	ENST00000473762		TCGA	LD	GBM	TCGA-27-1834-01A	MEGF8	chr19	42848985	+	CEACAMP3	chr19	42110519	+
In-frame	ENST00000247178	ENST00000360689		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
In-frame	ENST00000247178	ENST00000394586		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
In-frame	ENST00000247178	ENST00000557164		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
In-frame	ENST00000247178	ENST00000394585		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
In-frame	ENST00000247178	ENST00000358307		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
5CDS-intron	ENST00000247178	ENST00000417683		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
5CDS-3UTR	ENST00000247178	ENST00000554765		TCGA	LD	GBM	TCGA-27-1835-01A	ATG14	chr14	55878320	-	FUT8	chr14	66135961	+
5CDS-3UTR	ENST00000374379	ENST00000485046		TCGA	LD	GBM	TCGA-27-1835-01A	CLIC4	chr1	25140710	+	PLOD1	chr1	12008033	+
5CDS-3UTR	ENST00000374379	ENST00000376369		TCGA	LD	GBM	TCGA-27-1835-01A	CLIC4	chr1	25140710	+	PLOD1	chr1	12008033	+
5CDS-3UTR	ENST00000374379	ENST00000196061		TCGA	LD	GBM	TCGA-27-1835-01A	CLIC4	chr1	25140710	+	PLOD1	chr1	12008033	+
3UTR-3UTR	ENST00000497755	ENST00000485046		TCGA	LD	GBM	TCGA-27-1835-01A	CLIC4	chr1	25140710	+	PLOD1	chr1	12008033	+
3UTR-3UTR	ENST00000497755	ENST00000376369		TCGA	LD	GBM	TCGA-27-1835-01A	CLIC4	chr1	25140710	+	PLOD1	chr1	12008033	+
3UTR-3UTR	ENST00000497755	ENST00000196061		TCGA	LD	GBM	TCGA-27-1835-01A	CLIC4	chr1	25140710	+	PLOD1	chr1	12008033	+
Frame-shit	ENST00000320895	ENST00000337537		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
In-frame	ENST00000320895	ENST00000555899		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
In-frame	ENST00000320895	ENST00000422769		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
5CDS-intron	ENST00000320895	ENST00000553266		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-3CDS	ENST00000507807	ENST00000337537		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-3CDS	ENST00000507807	ENST00000555899		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-3CDS	ENST00000507807	ENST00000422769		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-intron	ENST00000507807	ENST00000553266		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
Frame-shit	ENST00000320927	ENST00000337537		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
In-frame	ENST00000320927	ENST00000555899		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
In-frame	ENST00000320927	ENST00000422769		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
5CDS-intron	ENST00000320927	ENST00000553266		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-3CDS	ENST00000506641	ENST00000337537		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-3CDS	ENST00000506641	ENST00000555899		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-3CDS	ENST00000506641	ENST00000422769		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
intron-intron	ENST00000506641	ENST00000553266		TCGA	LD	GBM	TCGA-27-1835-01A	CLPTM1L	chr5	1344466	-	PPP2R5E	chr14	63842826	-
Frame-shit	ENST00000446378	ENST00000323848		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
Frame-shit	ENST00000446378	ENST00000447431		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
Frame-shit	ENST00000446378	ENST00000374389		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
5CDS-intron	ENST00000446378	ENST00000479034		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
5CDS-intron	ENST00000446378	ENST00000537199		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
intron-3CDS	ENST00000505466	ENST00000323848		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
intron-3CDS	ENST00000505466	ENST00000447431		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
intron-3CDS	ENST00000505466	ENST00000374389		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
intron-intron	ENST00000505466	ENST00000479034		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
intron-intron	ENST00000505466	ENST00000537199		TCGA	LD	GBM	TCGA-27-1835-01A	CMYA5	chr5	79084927	+	SRRM1	chr1	24998673	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	LD	GBM	TCGA-27-1835-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000235332	ENST00000446378		TCGA	LD	GBM	TCGA-27-1835-01A	MIIP	chr1	12090181	+	CMYA5	chr5	79084794	+
5CDS-intron	ENST00000235332	ENST00000505466		TCGA	LD	GBM	TCGA-27-1835-01A	MIIP	chr1	12090181	+	CMYA5	chr5	79084794	+
intron-3CDS	ENST00000436478	ENST00000446378		TCGA	LD	GBM	TCGA-27-1835-01A	MIIP	chr1	12090181	+	CMYA5	chr5	79084794	+
intron-intron	ENST00000436478	ENST00000505466		TCGA	LD	GBM	TCGA-27-1835-01A	MIIP	chr1	12090181	+	CMYA5	chr5	79084794	+
3UTR-3CDS	ENST00000466860	ENST00000446378		TCGA	LD	GBM	TCGA-27-1835-01A	MIIP	chr1	12090181	+	CMYA5	chr5	79084794	+
3UTR-intron	ENST00000466860	ENST00000505466		TCGA	LD	GBM	TCGA-27-1835-01A	MIIP	chr1	12090181	+	CMYA5	chr5	79084794	+
Frame-shit	ENST00000555166	ENST00000310581		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
In-frame	ENST00000555166	ENST00000296820		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
Frame-shit	ENST00000555166	ENST00000334602		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
Frame-shit	ENST00000555166	ENST00000508104		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000555166	ENST00000522877		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
Frame-shit	ENST00000556492	ENST00000310581		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
In-frame	ENST00000556492	ENST00000296820		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
Frame-shit	ENST00000556492	ENST00000334602		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
Frame-shit	ENST00000556492	ENST00000508104		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000556492	ENST00000522877		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000554703	ENST00000310581		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000554703	ENST00000296820		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000554703	ENST00000334602		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000554703	ENST00000508104		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
intron-intron	ENST00000554703	ENST00000522877		TCGA	LD	GBM	TCGA-27-1835-01A	NAA30	chr14	57866601	+	TERT	chr5	1282739	-
In-frame	ENST00000353383	ENST00000355797		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
In-frame	ENST00000353383	ENST00000375036		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
In-frame	ENST00000353383	ENST00000449428		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
In-frame	ENST00000353383	ENST00000592148		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
5CDS-5UTR	ENST00000353383	ENST00000585519		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
5CDS-5UTR	ENST00000353383	ENST00000588114		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
5CDS-5UTR	ENST00000353383	ENST00000589082		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000489697	ENST00000355797		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000489697	ENST00000375036		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000489697	ENST00000449428		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000489697	ENST00000592148		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000489697	ENST00000585519		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000489697	ENST00000588114		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000489697	ENST00000589082		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000261641	ENST00000355797		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000261641	ENST00000375036		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000261641	ENST00000449428		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-3CDS	ENST00000261641	ENST00000592148		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000261641	ENST00000585519		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000261641	ENST00000588114		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
intron-5UTR	ENST00000261641	ENST00000589082		TCGA	LD	GBM	TCGA-27-1835-01A	RAI1	chr17	17701827	+	MXRA7	chr17	74684258	-
In-frame	ENST00000316754	ENST00000460742		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
Frame-shit	ENST00000316754	ENST00000259983		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
Frame-shit	ENST00000316754	ENST00000426700		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
5CDS-5UTR	ENST00000316754	ENST00000467832		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
5CDS-5UTR	ENST00000316754	ENST00000379586		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
5CDS-5UTR	ENST00000316754	ENST00000503680		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
3UTR-3CDS	ENST00000557133	ENST00000460742		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
3UTR-3CDS	ENST00000557133	ENST00000259983		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
3UTR-3CDS	ENST00000557133	ENST00000426700		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
3UTR-5UTR	ENST00000557133	ENST00000467832		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
3UTR-5UTR	ENST00000557133	ENST00000379586		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
3UTR-5UTR	ENST00000557133	ENST00000503680		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
In-frame	ENST00000555125	ENST00000460742		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
Frame-shit	ENST00000555125	ENST00000259983		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
Frame-shit	ENST00000555125	ENST00000426700		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
5CDS-5UTR	ENST00000555125	ENST00000467832		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
5CDS-5UTR	ENST00000555125	ENST00000379586		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
5CDS-5UTR	ENST00000555125	ENST00000503680		TCGA	LD	GBM	TCGA-27-1835-01A	RHOJ	chr14	63671765	+	C6orf52	chr6	10671831	-
Frame-shit	ENST00000416247	ENST00000557636		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
5CDS-intron	ENST00000416247	ENST00000286650		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
5CDS-intron	ENST00000416247	ENST00000298832		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
5CDS-intron	ENST00000416247	ENST00000556893		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
5CDS-intron	ENST00000416247	ENST00000554510		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
5CDS-intron	ENST00000416247	ENST00000556977		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
5CDS-intron	ENST00000416247	ENST00000555422		TCGA	LD	GBM	TCGA-27-1835-01A	SMIM13	chr6	11094622	+	TTLL5	chr14	76184204	+
Frame-shit	ENST00000313288	ENST00000481110		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
In-frame	ENST00000313288	ENST00000440486		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
In-frame	ENST00000313288	ENST00000412135		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
In-frame	ENST00000313288	ENST00000340107		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
In-frame	ENST00000313288	ENST00000260795		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
In-frame	ENST00000313288	ENST00000352904		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
5CDS-intron	ENST00000313288	ENST00000474521		TCGA	LD	GBM	TCGA-27-1835-01A	TACC3	chr4	1741494	+	FGFR3	chr4	1808629	+
intron-intron	ENST00000557636	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000557636	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000557636	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000557636	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000557636	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000286650	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000286650	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000286650	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000286650	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000286650	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000298832	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000298832	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000298832	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000298832	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000298832	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556893	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556893	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556893	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556893	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556893	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000554510	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000554510	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000554510	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000554510	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000554510	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556977	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556977	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556977	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556977	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000556977	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000555422	ENST00000553443		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000555422	ENST00000476979		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000555422	ENST00000267368		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000555422	ENST00000382320		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-intron	ENST00000555422	ENST00000554555		TCGA	LD	GBM	TCGA-27-1835-01A	TTLL5	chr14	76127980	+	TTC6	chr14	38385703	+
intron-3CDS	ENST00000469100	ENST00000373456		TCGA	LD	GBM	TCGA-27-1835-01A	YARS	chr1	33276192	-	RNF19B	chr1	33415375	-
intron-3CDS	ENST00000469100	ENST00000356990		TCGA	LD	GBM	TCGA-27-1835-01A	YARS	chr1	33276192	-	RNF19B	chr1	33415375	-
intron-3CDS	ENST00000469100	ENST00000235150		TCGA	LD	GBM	TCGA-27-1835-01A	YARS	chr1	33276192	-	RNF19B	chr1	33415375	-
In-frame	ENST00000373477	ENST00000373456		TCGA	LD	GBM	TCGA-27-1835-01A	YARS	chr1	33276192	-	RNF19B	chr1	33415375	-
In-frame	ENST00000373477	ENST00000356990		TCGA	LD	GBM	TCGA-27-1835-01A	YARS	chr1	33276192	-	RNF19B	chr1	33415375	-
In-frame	ENST00000373477	ENST00000235150		TCGA	LD	GBM	TCGA-27-1835-01A	YARS	chr1	33276192	-	RNF19B	chr1	33415375	-
Frame-shit	ENST00000262891	ENST00000420980		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000262891	ENST00000412732		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000262891	ENST00000416611		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000262891	ENST00000414789		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000262891	ENST00000355526		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000262891	ENST00000456296		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000300843	ENST00000420980		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000300843	ENST00000412732		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000300843	ENST00000416611		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000300843	ENST00000414789		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000300843	ENST00000355526		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000300843	ENST00000456296		TCGA	LD	GBM	TCGA-27-2519-01A	MARK4	chr19	45754897	+	DPF1	chr19	38713348	-
3UTR-3UTR	ENST00000379153	ENST00000507796		TCGA	LD	GBM	TCGA-27-2521-01A	CD83	chr6	14136205	+	FAM138E	chr15	102496110	+
Frame-shit	ENST00000380249	ENST00000262244		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
5CDS-5UTR	ENST00000380249	ENST00000603061		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
Frame-shit	ENST00000338382	ENST00000262244		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
5CDS-5UTR	ENST00000338382	ENST00000603061		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
Frame-shit	ENST00000605086	ENST00000262244		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
5CDS-5UTR	ENST00000605086	ENST00000603061		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
intron-3CDS	ENST00000604828	ENST00000262244		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
intron-5UTR	ENST00000604828	ENST00000603061		TCGA	LD	GBM	TCGA-27-2521-01A	FOCAD	chr9	20867011	+	MOB3B	chr9	27359234	-
In-frame	ENST00000319540	ENST00000295470		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000319540	ENST00000349655		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000319540	ENST00000602300		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000319540	ENST00000502762		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
5CDS-intron	ENST00000319540	ENST00000514511		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000273908	ENST00000295470		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000273908	ENST00000349655		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000273908	ENST00000602300		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000273908	ENST00000502762		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
5CDS-intron	ENST00000273908	ENST00000514511		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000282709	ENST00000295470		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000282709	ENST00000349655		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000282709	ENST00000602300		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
In-frame	ENST00000282709	ENST00000502762		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
5CDS-intron	ENST00000282709	ENST00000514511		TCGA	LD	GBM	TCGA-27-2521-01A	SCD5	chr4	83719459	-	HNRNPDL	chr4	83349599	-
Frame-shit	ENST00000357674	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000357674	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000357674	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000357674	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000314062	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000314062	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000314062	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000314062	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000346964	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000346964	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000346964	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000346964	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000419354	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000419354	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000419354	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000419354	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000452595	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000452595	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000452595	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000452595	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000422288	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000422288	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000422288	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000422288	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000448528	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000448528	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000448528	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000448528	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000443183	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000443183	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000443183	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000443183	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000450955	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000450955	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000450955	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000450955	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000392382	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000392382	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000392382	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000392382	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
intron-3CDS	ENST00000485409	ENST00000231887		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000485409	ENST00000456310		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000485409	ENST00000475987		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000485409	ENST00000440662		TCGA	LD	GBM	TCGA-27-2523-01A	DLG1	chr3	196863413	-	EHHADH	chr3	184966305	-
intron-3UTR	ENST00000360614	ENST00000586683		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000252445		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000587806		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000589171		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000591674		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000586120		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000590700		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000360614	ENST00000591912		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-3UTR	ENST00000585374	ENST00000586683		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000252445		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000587806		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000589171		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000591674		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000586120		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000590700		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000585374	ENST00000591912		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-3UTR	ENST00000593119	ENST00000586683		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000252445		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000587806		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000589171		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000591674		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000586120		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000590700		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000593119	ENST00000591912		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-3UTR	ENST00000540670	ENST00000586683		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000252445		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000587806		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000589171		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000591674		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000586120		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000590700		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000540670	ENST00000591912		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-3UTR	ENST00000590729	ENST00000586683		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000252445		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000587806		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000589171		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000591674		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000586120		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000590700		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590729	ENST00000591912		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-3UTR	ENST00000590511	ENST00000586683		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000252445		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000587806		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000589171		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000591674		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000586120		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000590700		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-intron	ENST00000590511	ENST00000591912		TCGA	LD	GBM	TCGA-27-2523-01A	LONP1	chr19	5717542	-	ELOF1	chr19	11662861	-
intron-3CDS	ENST00000579649	ENST00000439268		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
intron-3CDS	ENST00000579649	ENST00000340578		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
intron-3CDS	ENST00000579649	ENST00000541471		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
intron-3CDS	ENST00000579649	ENST00000591092		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
intron-3CDS	ENST00000579649	ENST00000034275		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
intron-intron	ENST00000579649	ENST00000591124		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
Frame-shit	ENST00000582380	ENST00000439268		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
Frame-shit	ENST00000582380	ENST00000340578		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
Frame-shit	ENST00000582380	ENST00000541471		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
Frame-shit	ENST00000582380	ENST00000591092		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
Frame-shit	ENST00000582380	ENST00000034275		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5CDS-intron	ENST00000582380	ENST00000591124		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000577222	ENST00000439268		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000577222	ENST00000340578		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000577222	ENST00000541471		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000577222	ENST00000591092		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000577222	ENST00000034275		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-intron	ENST00000577222	ENST00000591124		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000347512	ENST00000439268		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000347512	ENST00000340578		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000347512	ENST00000541471		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000347512	ENST00000591092		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000347512	ENST00000034275		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-intron	ENST00000347512	ENST00000591124		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000579446	ENST00000439268		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000579446	ENST00000340578		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000579446	ENST00000541471		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000579446	ENST00000591092		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000579446	ENST00000034275		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-intron	ENST00000579446	ENST00000591124		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000394580	ENST00000439268		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000394580	ENST00000340578		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000394580	ENST00000541471		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000394580	ENST00000591092		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-3CDS	ENST00000394580	ENST00000034275		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
5UTR-intron	ENST00000394580	ENST00000591124		TCGA	LD	GBM	TCGA-27-2523-01A	RPL36	chr19	5690338	+	RANBP3	chr19	5928098	-
Frame-shit	ENST00000265728	ENST00000331872		TCGA	LD	GBM	TCGA-27-2524-01A	DBF4	chr7	87507540	+	GLUL	chr1	182355022	-
Frame-shit	ENST00000265728	ENST00000417584		TCGA	LD	GBM	TCGA-27-2524-01A	DBF4	chr7	87507540	+	GLUL	chr1	182355022	-
Frame-shit	ENST00000265728	ENST00000311223		TCGA	LD	GBM	TCGA-27-2524-01A	DBF4	chr7	87507540	+	GLUL	chr1	182355022	-
5CDS-5UTR	ENST00000265728	ENST00000491322		TCGA	LD	GBM	TCGA-27-2524-01A	DBF4	chr7	87507540	+	GLUL	chr1	182355022	-
5CDS-5UTR	ENST00000265728	ENST00000339526		TCGA	LD	GBM	TCGA-27-2524-01A	DBF4	chr7	87507540	+	GLUL	chr1	182355022	-
Frame-shit	ENST00000366628	ENST00000558879		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
Frame-shit	ENST00000366628	ENST00000301981		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
Frame-shit	ENST00000366628	ENST00000422500		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366628	ENST00000442993		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366628	ENST00000447360		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366628	ENST00000331450		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366628	ENST00000559399		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
Frame-shit	ENST00000366627	ENST00000558879		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
Frame-shit	ENST00000366627	ENST00000301981		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
Frame-shit	ENST00000366627	ENST00000422500		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366627	ENST00000442993		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366627	ENST00000447360		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366627	ENST00000331450		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000366627	ENST00000559399		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000490098	ENST00000558879		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000490098	ENST00000301981		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000490098	ENST00000422500		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000490098	ENST00000442993		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000490098	ENST00000447360		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000490098	ENST00000331450		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000490098	ENST00000559399		TCGA	LD	GBM	TCGA-27-2524-01A	NTPCR	chr1	233092189	+	LRRC28	chr15	99926235	+
Frame-shit	ENST00000382902	ENST00000369162		TCGA	LD	GBM	TCGA-27-2526-01A	OTUD7A	chr15	31862221	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000382902	ENST00000522650		TCGA	LD	GBM	TCGA-27-2526-01A	OTUD7A	chr15	31862221	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000382902	ENST00000369143		TCGA	LD	GBM	TCGA-27-2526-01A	OTUD7A	chr15	31862221	-	ASCC3	chr6	100988263	-
Frame-shit	ENST00000307050	ENST00000369162		TCGA	LD	GBM	TCGA-27-2526-01A	OTUD7A	chr15	31862221	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000307050	ENST00000522650		TCGA	LD	GBM	TCGA-27-2526-01A	OTUD7A	chr15	31862221	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000307050	ENST00000369143		TCGA	LD	GBM	TCGA-27-2526-01A	OTUD7A	chr15	31862221	-	ASCC3	chr6	100988263	-
In-frame	ENST00000254480	ENST00000579662		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
In-frame	ENST00000254480	ENST00000339591		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
In-frame	ENST00000254480	ENST00000200181		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
In-frame	ENST00000254480	ENST00000450894		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
In-frame	ENST00000254480	ENST00000449880		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5CDS-intron	ENST00000254480	ENST00000584558		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5UTR-3CDS	ENST00000425518	ENST00000579662		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5UTR-3CDS	ENST00000425518	ENST00000339591		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5UTR-3CDS	ENST00000425518	ENST00000200181		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5UTR-3CDS	ENST00000425518	ENST00000450894		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5UTR-3CDS	ENST00000425518	ENST00000449880		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
5UTR-intron	ENST00000425518	ENST00000584558		TCGA	LD	GBM	TCGA-27-2526-01A	SMARCC1	chr3	47676680	-	ITGB4	chr17	73744922	+
intron-intron	ENST00000463381	ENST00000396299		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000463381	ENST00000357727		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000463381	ENST00000396300		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000463381	ENST00000409603		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000463381	ENST00000396298		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000463381	ENST00000482692		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000473312	ENST00000396299		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000473312	ENST00000357727		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000473312	ENST00000396300		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000473312	ENST00000409603		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000473312	ENST00000396298		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000473312	ENST00000482692		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000479901	ENST00000396299		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000479901	ENST00000357727		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000479901	ENST00000396300		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000479901	ENST00000409603		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000479901	ENST00000396298		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000479901	ENST00000482692		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000397238	ENST00000396299		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000397238	ENST00000357727		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000397238	ENST00000396300		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000397238	ENST00000409603		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000397238	ENST00000396298		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000397238	ENST00000482692		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000476375	ENST00000396299		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000476375	ENST00000357727		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000476375	ENST00000396300		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000476375	ENST00000409603		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000476375	ENST00000396298		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000476375	ENST00000482692		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000335367	ENST00000396299		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000335367	ENST00000357727		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000335367	ENST00000396300		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000335367	ENST00000409603		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000335367	ENST00000396298		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
intron-intron	ENST00000335367	ENST00000482692		TCGA	LD	GBM	TCGA-27-2528-01A	AGAP3	chr7	150784159	+	CREB5	chr7	28527793	+
Frame-shit	ENST00000539406	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000222792	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000435288	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000495789	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000539389	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000546235	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000409041	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000424025	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000439711	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000421775	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000410098	ENST00000289407		TCGA	LD	GBM	TCGA-27-2528-01A	CHN2	chr7	29186576	+	TSPAN33	chr7	128801520	+
5UTR-3CDS	ENST00000474874	ENST00000054666		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
5UTR-5UTR	ENST00000474874	ENST00000470357		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
5UTR-3CDS	ENST00000377482	ENST00000054666		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
5UTR-5UTR	ENST00000377482	ENST00000470357		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
intron-3CDS	ENST00000467067	ENST00000054666		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
intron-5UTR	ENST00000467067	ENST00000470357		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
5UTR-3CDS	ENST00000469499	ENST00000054666		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
5UTR-5UTR	ENST00000469499	ENST00000470357		TCGA	LD	GBM	TCGA-27-2528-01A	ERRFI1	chr1	8086218	-	VAMP3	chr1	7837220	+
intron-3CDS	ENST00000382902	ENST00000334528		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-3CDS	ENST00000382902	ENST00000561249		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-3CDS	ENST00000382902	ENST00000559047		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-intron	ENST00000382902	ENST00000558197		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-intron	ENST00000382902	ENST00000559150		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-intron	ENST00000382902	ENST00000320930		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-3CDS	ENST00000307050	ENST00000334528		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-3CDS	ENST00000307050	ENST00000561249		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-3CDS	ENST00000307050	ENST00000559047		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-intron	ENST00000307050	ENST00000558197		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-intron	ENST00000307050	ENST00000559150		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
intron-intron	ENST00000307050	ENST00000320930		TCGA	LD	GBM	TCGA-28-1747-01C	OTUD7A	chr15	32162710	-	FMN1	chr15	33091154	-
5CDS-5UTR	ENST00000545604	ENST00000491129		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000545604	ENST00000046087		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000545604	ENST00000419417		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-5UTR	ENST00000540354	ENST00000491129		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000540354	ENST00000046087		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000540354	ENST00000419417		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-5UTR	ENST00000381552	ENST00000491129		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000381552	ENST00000046087		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000381552	ENST00000419417		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-5UTR	ENST00000266509	ENST00000491129		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000266509	ENST00000046087		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000266509	ENST00000419417		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
intron-5UTR	ENST00000535609	ENST00000491129		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
intron-intron	ENST00000535609	ENST00000046087		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
intron-intron	ENST00000535609	ENST00000419417		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-5UTR	ENST00000545102	ENST00000491129		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000545102	ENST00000046087		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
5CDS-intron	ENST00000545102	ENST00000419417		TCGA	LD	GBM	TCGA-28-1747-01C	SLCO1C1	chr12	20876188	+	ZPBP	chr7	49940811	-
In-frame	ENST00000222584	ENST00000258733		TCGA	LD	GBM	TCGA-28-1747-01C	SP4	chr7	21469210	+	GPNMB	chr7	23313140	+
In-frame	ENST00000222584	ENST00000381990		TCGA	LD	GBM	TCGA-28-1747-01C	SP4	chr7	21469210	+	GPNMB	chr7	23313140	+
5CDS-intron	ENST00000222584	ENST00000409458		TCGA	LD	GBM	TCGA-28-1747-01C	SP4	chr7	21469210	+	GPNMB	chr7	23313140	+
5CDS-intron	ENST00000222584	ENST00000539136		TCGA	LD	GBM	TCGA-28-1747-01C	SP4	chr7	21469210	+	GPNMB	chr7	23313140	+
5CDS-intron	ENST00000222584	ENST00000453162		TCGA	LD	GBM	TCGA-28-1747-01C	SP4	chr7	21469210	+	GPNMB	chr7	23313140	+
5CDS-3UTR	ENST00000222584	ENST00000478451		TCGA	LD	GBM	TCGA-28-1747-01C	SP4	chr7	21469210	+	GPNMB	chr7	23313140	+
5CDS-5UTR	ENST00000267202	ENST00000202967		TCGA	LD	GBM	TCGA-28-1747-01C	VPS37B	chr12	123380499	-	SIRT4	chr12	120741364	+
5CDS-intron	ENST00000267202	ENST00000537892		TCGA	LD	GBM	TCGA-28-1747-01C	VPS37B	chr12	123380499	-	SIRT4	chr12	120741364	+
In-frame	ENST00000294244	ENST00000255681		TCGA	LD	GBM	TCGA-28-1753-01A	C11orf84	chr11	63586474	+	MACROD1	chr11	63782753	-
5CDS-intron	ENST00000294244	ENST00000538595		TCGA	LD	GBM	TCGA-28-1753-01A	C11orf84	chr11	63586474	+	MACROD1	chr11	63782753	-
5CDS-5UTR	ENST00000357028	ENST00000246841		TCGA	LD	GBM	TCGA-28-1753-01A	MED27	chr9	134889724	-	FLRT1	chr11	63870666	+
5CDS-5UTR	ENST00000292035	ENST00000246841		TCGA	LD	GBM	TCGA-28-1753-01A	MED27	chr9	134889724	-	FLRT1	chr11	63870666	+
intron-5UTR	ENST00000474263	ENST00000246841		TCGA	LD	GBM	TCGA-28-1753-01A	MED27	chr9	134889724	-	FLRT1	chr11	63870666	+
In-frame	ENST00000264057	ENST00000373368		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
In-frame	ENST00000264057	ENST00000168148		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
5CDS-intron	ENST00000264057	ENST00000492481		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
In-frame	ENST00000409813	ENST00000373368		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
In-frame	ENST00000409813	ENST00000168148		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
5CDS-intron	ENST00000409813	ENST00000492481		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
intron-3CDS	ENST00000489613	ENST00000373368		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
intron-3CDS	ENST00000489613	ENST00000168148		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
intron-intron	ENST00000489613	ENST00000492481		TCGA	LD	GBM	TCGA-28-2499-01A	DGKD	chr2	234299129	+	SPP2	chr2	234967480	+
5UTR-intron	ENST00000373566	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373566	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373566	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373566	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373563	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373563	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373563	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000373563	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409480	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409480	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409480	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409480	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409547	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409547	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409547	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409547	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409196	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409196	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409196	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409196	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409451	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409451	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409451	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5UTR-intron	ENST00000409451	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
3UTR-intron	ENST00000482666	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
3UTR-intron	ENST00000482666	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
3UTR-intron	ENST00000482666	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
3UTR-intron	ENST00000482666	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
intron-intron	ENST00000452341	ENST00000402136		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
intron-intron	ENST00000452341	ENST00000407315		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
intron-intron	ENST00000452341	ENST00000402545		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
intron-intron	ENST00000452341	ENST00000497486		TCGA	LD	GBM	TCGA-28-2499-01A	GIGYF2	chr2	233562102	+	THAP4	chr2	242573494	-
5CDS-intron	ENST00000402136	ENST00000402530		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5CDS-intron	ENST00000402136	ENST00000274979		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5CDS-intron	ENST00000402136	ENST00000402430		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5CDS-intron	ENST00000407315	ENST00000402530		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5CDS-intron	ENST00000407315	ENST00000274979		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5CDS-intron	ENST00000407315	ENST00000402430		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
intron-intron	ENST00000402545	ENST00000402530		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
intron-intron	ENST00000402545	ENST00000274979		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
intron-intron	ENST00000402545	ENST00000402430		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5UTR-intron	ENST00000497486	ENST00000402530		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5UTR-intron	ENST00000497486	ENST00000274979		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5UTR-intron	ENST00000497486	ENST00000402430		TCGA	LD	GBM	TCGA-28-2499-01A	THAP4	chr2	242541311	-	ANO7	chr2	242151509	+
5UTR-3CDS	ENST00000395535	ENST00000395422		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	CHCHD2	chr7	56174263	-
5UTR-3CDS	ENST00000352861	ENST00000395422		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	CHCHD2	chr7	56174263	-
5UTR-3CDS	ENST00000415949	ENST00000395422		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	CHCHD2	chr7	56174263	-
intron-3CDS	ENST00000450622	ENST00000395422		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	CHCHD2	chr7	56174263	-
5UTR-5UTR	ENST00000395535	ENST00000452681		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395535	ENST00000537360		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395535	ENST00000297373		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000395535	ENST00000489604		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000352861	ENST00000452681		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000352861	ENST00000537360		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000352861	ENST00000297373		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000352861	ENST00000489604		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000415949	ENST00000452681		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000415949	ENST00000537360		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000415949	ENST00000297373		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
5UTR-5UTR	ENST00000415949	ENST00000489604		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000450622	ENST00000452681		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000450622	ENST00000537360		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000450622	ENST00000297373		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
intron-5UTR	ENST00000450622	ENST00000489604		TCGA	LD	GBM	TCGA-28-2513-01A	SEC61G	chr7	54826851	-	PHKG1	chr7	56156668	-
In-frame	ENST00000373095	ENST00000338961		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
5CDS-5UTR	ENST00000373095	ENST00000277462		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
5CDS-5UTR	ENST00000373095	ENST00000483625		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
intron-3CDS	ENST00000373084	ENST00000338961		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000373084	ENST00000277462		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000373084	ENST00000483625		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
intron-3CDS	ENST00000300434	ENST00000338961		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000300434	ENST00000277462		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000300434	ENST00000483625		TCGA	LD	GBM	TCGA-28-5204-01A	FAM102A	chr9	130742271	-	PTGES2	chr9	130887720	-
Frame-shit	ENST00000377110	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000377111	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000377105	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000377106	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000360823	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000357533	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000396285	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000358082	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000396292	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000408909	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000396280	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
Frame-shit	ENST00000423814	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
intron-3CDS	ENST00000377101	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
intron-3CDS	ENST00000396283	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
intron-3CDS	ENST00000361823	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
intron-3CDS	ENST00000377097	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
intron-3CDS	ENST00000437699	ENST00000281156		TCGA	LD	GBM	TCGA-28-5204-01A	TRPM3	chr9	73296422	-	KHDRBS2	chr6	62407158	-
5UTR-intron	ENST00000287585	ENST00000410534		TCGA	LD	GBM	TCGA-28-5207-01A	LHFPL4	chr3	9595369	-	SOX2-OT	chr3	181281508	+
intron-intron	ENST00000495730	ENST00000410534		TCGA	LD	GBM	TCGA-28-5207-01A	LHFPL4	chr3	9595369	-	SOX2-OT	chr3	181281508	+
Frame-shit	ENST00000540661	ENST00000381020		TCGA	LD	GBM	TCGA-28-5207-01A	MTMR6	chr13	25841917	-	CDX2	chr13	28537506	-
5CDS-5UTR	ENST00000540661	ENST00000548877		TCGA	LD	GBM	TCGA-28-5207-01A	MTMR6	chr13	25841917	-	CDX2	chr13	28537506	-
Frame-shit	ENST00000381801	ENST00000381020		TCGA	LD	GBM	TCGA-28-5207-01A	MTMR6	chr13	25841917	-	CDX2	chr13	28537506	-
5CDS-5UTR	ENST00000381801	ENST00000548877		TCGA	LD	GBM	TCGA-28-5207-01A	MTMR6	chr13	25841917	-	CDX2	chr13	28537506	-
intron-3CDS	ENST00000482345	ENST00000381020		TCGA	LD	GBM	TCGA-28-5207-01A	MTMR6	chr13	25841917	-	CDX2	chr13	28537506	-
intron-5UTR	ENST00000482345	ENST00000548877		TCGA	LD	GBM	TCGA-28-5207-01A	MTMR6	chr13	25841917	-	CDX2	chr13	28537506	-
Frame-shit	ENST00000328923	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
In-frame	ENST00000328923	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
5CDS-3UTR	ENST00000328923	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000554600	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000554600	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000554600	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
Frame-shit	ENST00000557487	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
In-frame	ENST00000557487	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
5CDS-3UTR	ENST00000557487	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
Frame-shit	ENST00000414700	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
In-frame	ENST00000414700	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
5CDS-3UTR	ENST00000414700	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
Frame-shit	ENST00000553474	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
In-frame	ENST00000553474	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
5CDS-3UTR	ENST00000553474	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
Frame-shit	ENST00000449049	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
In-frame	ENST00000449049	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
5CDS-3UTR	ENST00000449049	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
Frame-shit	ENST00000393827	ENST00000320442		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
In-frame	ENST00000393827	ENST00000379218		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
5CDS-3UTR	ENST00000393827	ENST00000490243		TCGA	LD	GBM	TCGA-28-5207-01A	SHMT2	chr12	57627893	+	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000543727	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000543727	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000543727	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000543727	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000543727	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000543727	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000543727	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3UTR	ENST00000543727	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000550559	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3UTR	ENST00000550559	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000548851	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3UTR	ENST00000548851	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000454289	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3UTR	ENST00000454289	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3CDS	ENST00000540550	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
3UTR-3UTR	ENST00000540550	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000323833	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3UTR	ENST00000323833	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000350762	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3UTR	ENST00000350762	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000372445		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000436109		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000372444		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000372449		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000259751		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000372452		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3CDS	ENST00000497617	ENST00000438588		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
intron-3UTR	ENST00000497617	ENST00000483640		TCGA	LD	GBM	TCGA-28-5207-01A	TSFM	chr12	58191070	+	TJAP1	chr6	43473034	+
In-frame	ENST00000400521	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
In-frame	ENST00000400519	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
In-frame	ENST00000535882	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
In-frame	ENST00000334363	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
intron-3CDS	ENST00000400518	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
intron-3CDS	ENST00000542719	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
intron-3CDS	ENST00000491939	ENST00000216117		TCGA	LD	GBM	TCGA-28-5207-01A	TXNRD2	chr22	19929224	-	HMOX1	chr22	35782678	+
intron-3CDS	ENST00000261900	ENST00000552285		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000261900	ENST00000315970		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000261900	ENST00000439210		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000261900	ENST00000389146		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-intron	ENST00000261900	ENST00000413095		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-intron	ENST00000261900	ENST00000551035		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-intron	ENST00000261900	ENST00000435406		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-intron	ENST00000261900	ENST00000257966		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
intron-intron	ENST00000261900	ENST00000389142		TCGA	LD	GBM	TCGA-28-5209-01A	CCNT1	chr12	49086022	-	OS9	chr12	58109543	+
Frame-shit	ENST00000380050	ENST00000287957		TCGA	LD	GBM	TCGA-28-5216-01A	CDK14	chr7	90547039	+	GATAD1	chr7	92078066	+
Frame-shit	ENST00000265741	ENST00000287957		TCGA	LD	GBM	TCGA-28-5216-01A	CDK14	chr7	90547039	+	GATAD1	chr7	92078066	+
Frame-shit	ENST00000406263	ENST00000287957		TCGA	LD	GBM	TCGA-28-5216-01A	CDK14	chr7	90547039	+	GATAD1	chr7	92078066	+
Frame-shit	ENST00000436577	ENST00000287957		TCGA	LD	GBM	TCGA-28-5216-01A	CDK14	chr7	90547039	+	GATAD1	chr7	92078066	+
intron-3CDS	ENST00000496279	ENST00000287957		TCGA	LD	GBM	TCGA-28-5216-01A	CDK14	chr7	90547039	+	GATAD1	chr7	92078066	+
5CDS-intron	ENST00000378609	ENST00000358603		TCGA	LD	GBM	TCGA-28-5216-01A	GNB1	chr1	1724684	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000378609	ENST00000371226		TCGA	LD	GBM	TCGA-28-5216-01A	GNB1	chr1	1724684	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000378609	ENST00000467063		TCGA	LD	GBM	TCGA-28-5216-01A	GNB1	chr1	1724684	-	OMA1	chr1	58946846	-
intron-intron	ENST00000472614	ENST00000358603		TCGA	LD	GBM	TCGA-28-5216-01A	GNB1	chr1	1724684	-	OMA1	chr1	58946846	-
intron-intron	ENST00000472614	ENST00000371226		TCGA	LD	GBM	TCGA-28-5216-01A	GNB1	chr1	1724684	-	OMA1	chr1	58946846	-
intron-intron	ENST00000472614	ENST00000467063		TCGA	LD	GBM	TCGA-28-5216-01A	GNB1	chr1	1724684	-	OMA1	chr1	58946846	-
5UTR-3CDS	ENST00000554144	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000554144	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-5UTR	ENST00000554144	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000420433	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000420433	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-5UTR	ENST00000420433	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000556376	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000556376	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-5UTR	ENST00000556376	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000381260	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000381260	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000381260	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000337881	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000337881	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-5UTR	ENST00000337881	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000605395	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-3CDS	ENST00000605395	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
5UTR-5UTR	ENST00000605395	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000508121	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000508121	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000508121	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000503639	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000503639	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000503639	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000553379	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000553379	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000553379	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000381255	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000381255	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000381255	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000317745	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000317745	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000317745	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000555760	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000555760	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000555760	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000556614	ENST00000295666		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000556614	ENST00000537922		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000556614	ENST00000512512		TCGA	LD	GBM	TCGA-28-5216-01A	HOPX	chr4	57547421	-	IGFBP7	chr4	57907099	-
Frame-shit	ENST00000264741	ENST00000264231		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-5UTR	ENST00000264741	ENST00000474523		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-3UTR	ENST00000264741	ENST00000493094		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-3UTR	ENST00000264741	ENST00000468801		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-intron	ENST00000264741	ENST00000538678		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
Frame-shit	ENST00000422441	ENST00000264231		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-5UTR	ENST00000422441	ENST00000474523		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-3UTR	ENST00000422441	ENST00000493094		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-3UTR	ENST00000422441	ENST00000468801		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5CDS-intron	ENST00000422441	ENST00000538678		TCGA	LD	GBM	TCGA-28-5216-01A	ITGA9	chr3	37560845	+	POPDC2	chr3	119361408	-
5UTR-3CDS	ENST00000257290	ENST00000282020		TCGA	LD	GBM	TCGA-28-5216-01A	PDGFRA	chr4	55095582	+	GRID2	chr4	93511282	+
5UTR-3UTR	ENST00000257290	ENST00000505687		TCGA	LD	GBM	TCGA-28-5216-01A	PDGFRA	chr4	55095582	+	GRID2	chr4	93511282	+
5UTR-3UTR	ENST00000257290	ENST00000510992		TCGA	LD	GBM	TCGA-28-5216-01A	PDGFRA	chr4	55095582	+	GRID2	chr4	93511282	+
5UTR-3CDS	ENST00000508170	ENST00000282020		TCGA	LD	GBM	TCGA-28-5216-01A	PDGFRA	chr4	55095582	+	GRID2	chr4	93511282	+
5UTR-3UTR	ENST00000508170	ENST00000505687		TCGA	LD	GBM	TCGA-28-5216-01A	PDGFRA	chr4	55095582	+	GRID2	chr4	93511282	+
5UTR-3UTR	ENST00000508170	ENST00000510992		TCGA	LD	GBM	TCGA-28-5216-01A	PDGFRA	chr4	55095582	+	GRID2	chr4	93511282	+
Frame-shit	ENST00000242351	ENST00000265735		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000242351	ENST00000445866		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000242351	ENST00000437425		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000242351	ENST00000447873		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000242351	ENST00000428696		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000242351	ENST00000415788		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000464606	ENST00000265735		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000464606	ENST00000445866		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000464606	ENST00000437425		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000464606	ENST00000447873		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000464606	ENST00000428696		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000464606	ENST00000415788		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000471652	ENST00000265735		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000471652	ENST00000445866		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000471652	ENST00000437425		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000471652	ENST00000447873		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000471652	ENST00000428696		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
Frame-shit	ENST00000471652	ENST00000415788		TCGA	LD	GBM	TCGA-28-5216-01A	ZC3HAV1	chr7	138758602	-	SGCE	chr7	94257671	-
intron-3CDS	ENST00000322231	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000339077	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000539124	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000542558	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000409689	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000545443	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000479288	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
In-frame	ENST00000322275	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
Frame-shit	ENST00000410047	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000545771	ENST00000288602		TCGA	LD	GBM	TCGA-28-5218-01A	KLHL7	chr7	23165418	+	BRAF	chr7	140482957	-
Frame-shit	ENST00000457714	ENST00000259037		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000457714	ENST00000493866		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000457714	ENST00000472629		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
5CDS-3UTR	ENST00000457714	ENST00000473500		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000361589	ENST00000259037		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000361589	ENST00000493866		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000361589	ENST00000472629		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
5CDS-3UTR	ENST00000361589	ENST00000473500		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000401917	ENST00000259037		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000401917	ENST00000493866		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000401917	ENST00000472629		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
5CDS-3UTR	ENST00000401917	ENST00000473500		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000545397	ENST00000259037		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000545397	ENST00000493866		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
Frame-shit	ENST00000545397	ENST00000472629		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
5CDS-3UTR	ENST00000545397	ENST00000473500		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
intron-3CDS	ENST00000466350	ENST00000259037		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
intron-3CDS	ENST00000466350	ENST00000493866		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
intron-3CDS	ENST00000466350	ENST00000472629		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
intron-3UTR	ENST00000466350	ENST00000473500		TCGA	LD	GBM	TCGA-28-5220-01A	NLGN1	chr3	173322881	+	NDUFB5	chr3	179341708	+
5UTR-3CDS	ENST00000358026	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000358026	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000344626	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000344626	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000429416	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000429416	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000541122	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000541122	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000589677	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000589677	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000444061	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000444061	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000590574	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000590574	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000413806	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000413806	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000450717	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000450717	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	LD	GBM	TCGA-28-5220-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
In-frame	ENST00000404479	ENST00000599227		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
Frame-shit	ENST00000404479	ENST00000269829		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
In-frame	ENST00000404479	ENST00000594384		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000404479	ENST00000596597		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000404479	ENST00000596825		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000404479	ENST00000333581		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000404479	ENST00000599953		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000404479	ENST00000596652		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000404479	ENST00000600044		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000404479	ENST00000600220		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000404479	ENST00000596929		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000404479	ENST00000595981		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000404479	ENST00000415203		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
In-frame	ENST00000318709	ENST00000599227		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
Frame-shit	ENST00000318709	ENST00000269829		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
In-frame	ENST00000318709	ENST00000594384		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000318709	ENST00000596597		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000318709	ENST00000596825		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000318709	ENST00000333581		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000318709	ENST00000599953		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000318709	ENST00000596652		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000318709	ENST00000600044		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000318709	ENST00000600220		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000318709	ENST00000596929		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000318709	ENST00000595981		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000318709	ENST00000415203		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-3CDS	ENST00000459629	ENST00000599227		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-3CDS	ENST00000459629	ENST00000269829		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-3CDS	ENST00000459629	ENST00000594384		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-intron	ENST00000459629	ENST00000596597		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-intron	ENST00000459629	ENST00000596825		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-intron	ENST00000459629	ENST00000333581		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-5UTR	ENST00000459629	ENST00000599953		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-5UTR	ENST00000459629	ENST00000596652		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-5UTR	ENST00000459629	ENST00000600044		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-5UTR	ENST00000459629	ENST00000600220		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-intron	ENST00000459629	ENST00000596929		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-intron	ENST00000459629	ENST00000595981		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
3UTR-intron	ENST00000459629	ENST00000415203		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
In-frame	ENST00000409301	ENST00000599227		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
Frame-shit	ENST00000409301	ENST00000269829		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
In-frame	ENST00000409301	ENST00000594384		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000409301	ENST00000596597		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000409301	ENST00000596825		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000409301	ENST00000333581		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000409301	ENST00000599953		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000409301	ENST00000596652		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000409301	ENST00000600044		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-5UTR	ENST00000409301	ENST00000600220		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000409301	ENST00000596929		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000409301	ENST00000595981		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
5CDS-intron	ENST00000409301	ENST00000415203		TCGA	LD	GBM	TCGA-32-1970-01A	AVL9	chr7	32535414	+	ZNF544	chr19	58772217	+
In-frame	ENST00000409280	ENST00000242209		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
In-frame	ENST00000409280	ENST00000538336		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
In-frame	ENST00000409280	ENST00000538443		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000409280	ENST00000489038		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000409280	ENST00000490776		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
In-frame	ENST00000283905	ENST00000242209		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
In-frame	ENST00000283905	ENST00000538336		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
In-frame	ENST00000283905	ENST00000538443		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000283905	ENST00000489038		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
5CDS-intron	ENST00000283905	ENST00000490776		TCGA	LD	GBM	TCGA-32-1970-01A	C7orf31	chr7	25191215	-	FKBP9	chr7	33042288	+
5CDS-5UTR	ENST00000593149	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000593149	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000593149	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000593149	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-5UTR	ENST00000248342	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000248342	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000248342	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000248342	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
3UTR-5UTR	ENST00000593062	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
3UTR-intron	ENST00000593062	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
3UTR-intron	ENST00000593062	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
3UTR-intron	ENST00000593062	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-5UTR	ENST00000538434	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000538434	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000538434	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000538434	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-5UTR	ENST00000588934	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000588934	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000588934	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000588934	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-5UTR	ENST00000545173	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000545173	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000545173	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000545173	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-5UTR	ENST00000592558	ENST00000572681		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000592558	ENST00000575839		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000592558	ENST00000160740		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
5CDS-intron	ENST00000592558	ENST00000575354		TCGA	LD	GBM	TCGA-32-1970-01A	EIF3K	chr19	39114832	+	CIC	chr19	42775927	+
Frame-shit	ENST00000509137	ENST00000355481		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000509137	ENST00000360985		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000509137	ENST00000359596		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000292853	ENST00000355481		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000292853	ENST00000360985		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000292853	ENST00000359596		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000600828	ENST00000355481		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000600828	ENST00000360985		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
Frame-shit	ENST00000600828	ENST00000359596		TCGA	LD	GBM	TCGA-32-1970-01A	FBXO27	chr19	39517510	-	RYR1	chr19	39033987	+
5CDS-intron	ENST00000528094	ENST00000391788		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-5UTR	ENST00000528094	ENST00000360465		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-3UTR	ENST00000528094	ENST00000531472		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000528094	ENST00000598192		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000528094	ENST00000594530		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000533418	ENST00000391788		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-5UTR	ENST00000533418	ENST00000360465		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-3UTR	ENST00000533418	ENST00000531472		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000533418	ENST00000598192		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000533418	ENST00000594530		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000313777	ENST00000391788		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-5UTR	ENST00000313777	ENST00000360465		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-3UTR	ENST00000313777	ENST00000531472		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000313777	ENST00000598192		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000313777	ENST00000594530		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000445575	ENST00000391788		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-5UTR	ENST00000445575	ENST00000360465		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-3UTR	ENST00000445575	ENST00000531472		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000445575	ENST00000598192		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
5CDS-intron	ENST00000445575	ENST00000594530		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-intron	ENST00000534008	ENST00000391788		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-5UTR	ENST00000534008	ENST00000360465		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-3UTR	ENST00000534008	ENST00000531472		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-intron	ENST00000534008	ENST00000598192		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-intron	ENST00000534008	ENST00000594530		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-intron	ENST00000526575	ENST00000391788		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-5UTR	ENST00000526575	ENST00000360465		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-3UTR	ENST00000526575	ENST00000531472		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-intron	ENST00000526575	ENST00000598192		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
intron-intron	ENST00000526575	ENST00000594530		TCGA	LD	GBM	TCGA-32-1970-01A	FUZ	chr19	50311671	-	ZNF528	chr19	52904938	+
In-frame	ENST00000283928	ENST00000323446		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
In-frame	ENST00000283928	ENST00000392518		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
In-frame	ENST00000283928	ENST00000598293		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
In-frame	ENST00000283928	ENST00000354199		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
In-frame	ENST00000283928	ENST00000405931		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
5CDS-intron	ENST00000283928	ENST00000598714		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
intron-3CDS	ENST00000466516	ENST00000323446		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
intron-3CDS	ENST00000466516	ENST00000392518		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
intron-3CDS	ENST00000466516	ENST00000598293		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
intron-3CDS	ENST00000466516	ENST00000354199		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
intron-3CDS	ENST00000466516	ENST00000405931		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
intron-intron	ENST00000466516	ENST00000598714		TCGA	LD	GBM	TCGA-32-1970-01A	JAZF1	chr7	28220082	-	CPT1C	chr19	50211980	+
Frame-shit	ENST00000306984	ENST00000589824		TCGA	LD	GBM	TCGA-32-1970-01A	MPLKIP	chr7	40173828	-	NLRP11	chr19	56307616	-
Frame-shit	ENST00000306984	ENST00000592953		TCGA	LD	GBM	TCGA-32-1970-01A	MPLKIP	chr7	40173828	-	NLRP11	chr19	56307616	-
Frame-shit	ENST00000306984	ENST00000589093		TCGA	LD	GBM	TCGA-32-1970-01A	MPLKIP	chr7	40173828	-	NLRP11	chr19	56307616	-
Frame-shit	ENST00000306984	ENST00000360133		TCGA	LD	GBM	TCGA-32-1970-01A	MPLKIP	chr7	40173828	-	NLRP11	chr19	56307616	-
Frame-shit	ENST00000306984	ENST00000443188		TCGA	LD	GBM	TCGA-32-1970-01A	MPLKIP	chr7	40173828	-	NLRP11	chr19	56307616	-
intron-3CDS	ENST00000457714	ENST00000447857		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-intron	ENST00000457714	ENST00000593725		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-3CDS	ENST00000361589	ENST00000447857		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-intron	ENST00000361589	ENST00000593725		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-3CDS	ENST00000401917	ENST00000447857		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-intron	ENST00000401917	ENST00000593725		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-3CDS	ENST00000545397	ENST00000447857		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-intron	ENST00000545397	ENST00000593725		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-3CDS	ENST00000466350	ENST00000447857		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
intron-intron	ENST00000466350	ENST00000593725		TCGA	LD	GBM	TCGA-32-1970-01A	NLGN1	chr3	173115853	+	CCDC155	chr19	49916225	+
Frame-shit	ENST00000254260	ENST00000539406		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000254260	ENST00000222792		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000254260	ENST00000435288		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000254260	ENST00000495789		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000254260	ENST00000539389		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000254260	ENST00000546235		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000254260	ENST00000409041		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000254260	ENST00000424025		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000254260	ENST00000439711		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000254260	ENST00000421775		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000254260	ENST00000410098		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000400226	ENST00000539406		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000400226	ENST00000222792		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000400226	ENST00000435288		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000400226	ENST00000495789		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000400226	ENST00000539389		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
Frame-shit	ENST00000400226	ENST00000546235		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000400226	ENST00000409041		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000400226	ENST00000424025		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000400226	ENST00000439711		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000400226	ENST00000421775		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5CDS-intron	ENST00000400226	ENST00000410098		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000588683	ENST00000539406		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000588683	ENST00000222792		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000588683	ENST00000435288		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000588683	ENST00000495789		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000588683	ENST00000539389		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000588683	ENST00000546235		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-intron	ENST00000588683	ENST00000409041		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-intron	ENST00000588683	ENST00000424025		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-intron	ENST00000588683	ENST00000439711		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-intron	ENST00000588683	ENST00000421775		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-intron	ENST00000588683	ENST00000410098		TCGA	LD	GBM	TCGA-32-1970-01A	RHPN2	chr19	33481420	-	CHN2	chr7	29394241	+
5UTR-3CDS	ENST00000523638	ENST00000395891		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
5UTR-3CDS	ENST00000523638	ENST00000453890		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
5UTR-3UTR	ENST00000523638	ENST00000471043		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
5UTR-3CDS	ENST00000592282	ENST00000395891		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
5UTR-3CDS	ENST00000592282	ENST00000453890		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
5UTR-3UTR	ENST00000592282	ENST00000471043		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
intron-3CDS	ENST00000588993	ENST00000395891		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
intron-3CDS	ENST00000588993	ENST00000453890		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
intron-3UTR	ENST00000588993	ENST00000471043		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
intron-3CDS	ENST00000593142	ENST00000395891		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
intron-3CDS	ENST00000593142	ENST00000453890		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
intron-3UTR	ENST00000593142	ENST00000471043		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF260	chr19	37019121	-	HECW1	chr7	43436413	+
Frame-shit	ENST00000599227	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000599227	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000599227	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
In-frame	ENST00000269829	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000269829	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000269829	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
Frame-shit	ENST00000594384	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000594384	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000594384	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
3UTR-3CDS	ENST00000596597	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
3UTR-3UTR	ENST00000596597	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
3UTR-3UTR	ENST00000596597	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
Frame-shit	ENST00000596825	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000596825	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000596825	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
In-frame	ENST00000333581	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000333581	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000333581	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5UTR-3CDS	ENST00000599953	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5UTR-3UTR	ENST00000599953	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5UTR-3UTR	ENST00000599953	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
In-frame	ENST00000596652	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000596652	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000596652	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3CDS	ENST00000600044	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000600044	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000600044	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3CDS	ENST00000600220	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000600220	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000600220	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
In-frame	ENST00000596929	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000596929	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000596929	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
In-frame	ENST00000595981	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000595981	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
5CDS-3UTR	ENST00000595981	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3CDS	ENST00000415203	ENST00000354293		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000415203	ENST00000600199		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
intron-3UTR	ENST00000415203	ENST00000359032		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF544	chr19	58758160	+	AP2A1	chr19	50285014	+
In-frame	ENST00000601415	ENST00000601181		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF550	chr19	58063995	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000325134	ENST00000601181		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF550	chr19	58063995	-	CXCL17	chr19	42938008	-
In-frame	ENST00000457177	ENST00000601181		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF550	chr19	58063995	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000506609	ENST00000601181		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF550	chr19	58063995	-	CXCL17	chr19	42938008	-
5UTR-3CDS	ENST00000321287	ENST00000005257		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
5UTR-3UTR	ENST00000321287	ENST00000468201		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
5UTR-3CDS	ENST00000403906	ENST00000005257		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
5UTR-3UTR	ENST00000403906	ENST00000468201		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
5UTR-3CDS	ENST00000601151	ENST00000005257		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
5UTR-3UTR	ENST00000601151	ENST00000468201		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
intron-3CDS	ENST00000327920	ENST00000005257		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
intron-3UTR	ENST00000327920	ENST00000468201		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF610	chr19	52839759	+	RALA	chr7	39745722	+
intron-3CDS	ENST00000600175	ENST00000391945		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000600175	ENST00000391944		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000600175	ENST00000485403		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000600175	ENST00000391940		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000600175	ENST00000221481		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000601768	ENST00000391945		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000601768	ENST00000391944		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000601768	ENST00000485403		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000601768	ENST00000391940		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000601768	ENST00000221481		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000427512	ENST00000391945		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000427512	ENST00000391944		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000427512	ENST00000485403		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000427512	ENST00000391940		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000427512	ENST00000221481		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000343280	ENST00000391945		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000343280	ENST00000391944		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000343280	ENST00000485403		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000343280	ENST00000391940		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000343280	ENST00000221481		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000356584	ENST00000391945		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000356584	ENST00000391944		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000356584	ENST00000485403		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000356584	ENST00000391940		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000356584	ENST00000221481		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000425074	ENST00000391945		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-3CDS	ENST00000425074	ENST00000391944		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000425074	ENST00000485403		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000425074	ENST00000391940		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
intron-intron	ENST00000425074	ENST00000221481		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF772	chr19	57978327	-	ERCC2	chr19	45860957	-
In-frame	ENST00000593916	ENST00000342669		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000593916	ENST00000585392		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000593916	ENST00000587367		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000593916	ENST00000588599		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000593916	ENST00000391932		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000593916	ENST00000588301		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000593916	ENST00000590212		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-intron	ENST00000593916	ENST00000587579		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
In-frame	ENST00000598770	ENST00000342669		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000598770	ENST00000585392		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000598770	ENST00000587367		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000598770	ENST00000588599		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000598770	ENST00000391932		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000598770	ENST00000588301		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000598770	ENST00000590212		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-intron	ENST00000598770	ENST00000587579		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
In-frame	ENST00000599847	ENST00000342669		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000599847	ENST00000585392		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000599847	ENST00000587367		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000599847	ENST00000588599		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000599847	ENST00000391932		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000599847	ENST00000588301		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000599847	ENST00000590212		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-intron	ENST00000599847	ENST00000587579		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
In-frame	ENST00000282292	ENST00000342669		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000282292	ENST00000585392		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000282292	ENST00000587367		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000282292	ENST00000588599		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000282292	ENST00000391932		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000282292	ENST00000588301		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-5UTR	ENST00000282292	ENST00000590212		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5CDS-intron	ENST00000282292	ENST00000587579		TCGA	LD	GBM	TCGA-32-1970-01A	ZNF773	chr19	58016154	+	SNRPD2	chr19	46190985	-
5UTR-3CDS	ENST00000479650	ENST00000298585		TCGA	LD	GBM	TCGA-32-1980-01A	DPH7	chr9	140458886	-	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000479650	ENST00000471957		TCGA	LD	GBM	TCGA-32-1980-01A	DPH7	chr9	140458886	-	ZMYND19	chr9	140483170	-
Frame-shit	ENST00000277540	ENST00000298585		TCGA	LD	GBM	TCGA-32-1980-01A	DPH7	chr9	140458886	-	ZMYND19	chr9	140483170	-
5CDS-5UTR	ENST00000277540	ENST00000471957		TCGA	LD	GBM	TCGA-32-1980-01A	DPH7	chr9	140458886	-	ZMYND19	chr9	140483170	-
In-frame	ENST00000293872	ENST00000546373		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000293872	ENST00000551568		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000293872	ENST00000338356		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000293872	ENST00000549691		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000337351	ENST00000546373		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000337351	ENST00000551568		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000337351	ENST00000338356		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000337351	ENST00000549691		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000397783	ENST00000546373		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000397783	ENST00000551568		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
In-frame	ENST00000397783	ENST00000338356		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000397783	ENST00000549691		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
Frame-shit	ENST00000397780	ENST00000546373		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
Frame-shit	ENST00000397780	ENST00000551568		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
Frame-shit	ENST00000397780	ENST00000338356		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000397780	ENST00000549691		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5UTR-3CDS	ENST00000494366	ENST00000546373		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5UTR-3CDS	ENST00000494366	ENST00000551568		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5UTR-3CDS	ENST00000494366	ENST00000338356		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
5UTR-intron	ENST00000494366	ENST00000549691		TCGA	LD	GBM	TCGA-32-1980-01A	LUC7L	chr16	270648	-	CPM	chr12	69265736	-
intron-5UTR	ENST00000309060	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000309060	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000309060	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000309060	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000309060	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000309060	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000309060	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000309060	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000309060	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000540170	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000540170	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000540170	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000540170	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000540170	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000540170	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000540170	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000540170	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000540170	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000559234	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000559234	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000559234	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000559234	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000559234	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000559234	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000559234	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000559234	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000559234	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000557816	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000557816	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000557816	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000557816	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000557816	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000557816	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000557816	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000557816	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000557816	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000558993	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000558993	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000558993	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000558993	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000558993	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000558993	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000558993	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000558993	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000558993	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000544979	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000544979	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000544979	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000544979	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000544979	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000544979	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000544979	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000544979	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000544979	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-5UTR	ENST00000560361	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-5UTR	ENST00000560361	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000560361	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000560361	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-5UTR	ENST00000560361	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000560361	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000560361	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000560361	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000560361	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000432768	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000432768	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000432768	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000432768	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-5UTR	ENST00000432768	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000432768	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000432768	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000432768	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
intron-intron	ENST00000432768	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-5UTR	ENST00000561291	ENST00000355502		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-5UTR	ENST00000561291	ENST00000594617		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000561291	ENST00000447275		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000561291	ENST00000262805		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-5UTR	ENST00000561291	ENST00000594465		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000561291	ENST00000539010		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000561291	ENST00000598111		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000561291	ENST00000597297		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
5UTR-intron	ENST00000561291	ENST00000596647		TCGA	LD	GBM	TCGA-32-1980-01A	ZHX3	chr20	39896103	-	PDE4C	chr19	18344210	-
In-frame	ENST00000366767	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366767	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366767	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366767	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366769	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366769	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366769	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366769	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366764	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366764	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366764	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366764	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000334218	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000334218	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000334218	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000334218	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366766	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366766	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366766	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366766	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000535525	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000535525	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000535525	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000535525	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366765	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366765	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366765	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
In-frame	ENST00000366765	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
intron-3CDS	ENST00000488131	ENST00000404233		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
intron-3CDS	ENST00000488131	ENST00000529972		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
intron-3CDS	ENST00000488131	ENST00000525859		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
intron-3CDS	ENST00000488131	ENST00000543287		TCGA	LD	GBM	TCGA-32-1982-01A	CDC42BPA	chr1	227400837	-	HYOU1	chr11	118920549	-
intron-3CDS	ENST00000573951	ENST00000314616		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000573951	ENST00000347486		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000538765	ENST00000314616		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000538765	ENST00000347486		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
Frame-shit	ENST00000219069	ENST00000314616		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
Frame-shit	ENST00000219069	ENST00000347486		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000573578	ENST00000314616		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000573578	ENST00000347486		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000574253	ENST00000314616		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000574253	ENST00000347486		TCGA	LD	GBM	TCGA-32-1982-01A	ZNF263	chr16	3338570	+	SUPT6H	chr17	27022370	+
intron-3CDS	ENST00000312239	ENST00000477853		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000312239	ENST00000480380		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000312239	ENST00000375199		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000312239	ENST00000375208		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000312239	ENST00000356068		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-3CDS	ENST00000487117	ENST00000477853		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000487117	ENST00000480380		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000487117	ENST00000375199		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000487117	ENST00000375208		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000487117	ENST00000356068		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-3CDS	ENST00000375000	ENST00000477853		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375000	ENST00000480380		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375000	ENST00000375199		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375000	ENST00000375208		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375000	ENST00000356068		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-3CDS	ENST00000375003	ENST00000477853		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375003	ENST00000480380		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375003	ENST00000375199		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375003	ENST00000375208		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
intron-intron	ENST00000375003	ENST00000356068		TCGA	LD	GBM	TCGA-32-5222-01A	HP1BP3	chr1	21113688	-	EMC1	chr1	19568967	-
In-frame	ENST00000380338	ENST00000543880		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
In-frame	ENST00000380338	ENST00000604921		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
5UTR-3CDS	ENST00000355930	ENST00000543880		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
5UTR-3CDS	ENST00000355930	ENST00000604921		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
In-frame	ENST00000429426	ENST00000543880		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
In-frame	ENST00000429426	ENST00000604921		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
5UTR-3CDS	ENST00000475957	ENST00000543880		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
5UTR-3CDS	ENST00000475957	ENST00000604921		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
intron-3CDS	ENST00000380321	ENST00000543880		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
intron-3CDS	ENST00000380321	ENST00000604921		TCGA	LD	GBM	TCGA-32-5222-01A	MLLT3	chr9	20620653	-	IZUMO3	chr9	24545059	-
In-frame	ENST00000361445	ENST00000303635		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
In-frame	ENST00000361445	ENST00000439411		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000361445	ENST00000476163		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000361445	ENST00000557126		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000361445	ENST00000473578		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000361445	ENST00000467404		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000361445	ENST00000476864		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-3CDS	ENST00000376838	ENST00000303635		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-3CDS	ENST00000376838	ENST00000439411		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000376838	ENST00000476163		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000376838	ENST00000557126		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000376838	ENST00000473578		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000376838	ENST00000467404		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000376838	ENST00000476864		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-3CDS	ENST00000495435	ENST00000303635		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-3CDS	ENST00000495435	ENST00000439411		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000495435	ENST00000476163		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000495435	ENST00000557126		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000495435	ENST00000473578		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000495435	ENST00000467404		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000495435	ENST00000476864		TCGA	LD	GBM	TCGA-32-5222-01A	MTOR	chr1	11313896	-	CAMTA1	chr1	6880241	+
In-frame	ENST00000345512	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
5CDS-intron	ENST00000345512	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
In-frame	ENST00000373779	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
5CDS-intron	ENST00000373779	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
In-frame	ENST00000356870	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
5CDS-intron	ENST00000356870	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
In-frame	ENST00000323874	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
5CDS-intron	ENST00000323874	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
In-frame	ENST00000428026	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
5CDS-intron	ENST00000428026	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
In-frame	ENST00000460170	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
5CDS-intron	ENST00000460170	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
intron-3CDS	ENST00000415600	ENST00000376810		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
intron-intron	ENST00000415600	ENST00000376804		TCGA	LD	GBM	TCGA-32-5222-01A	PTPRU	chr1	29563229	+	UBIAD1	chr1	11345701	+
In-frame	ENST00000270625	ENST00000598810		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000270625	ENST00000593945		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000270625	ENST00000601519		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000270625	ENST00000311227		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000270625	ENST00000377214		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000270625	ENST00000539846		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
5CDS-5UTR	ENST00000270625	ENST00000598397		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000596873	ENST00000598810		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000596873	ENST00000593945		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000596873	ENST00000601519		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000596873	ENST00000311227		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000596873	ENST00000377214		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000596873	ENST00000539846		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
5CDS-5UTR	ENST00000596873	ENST00000598397		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000594493	ENST00000598810		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000594493	ENST00000593945		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000594493	ENST00000601519		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000594493	ENST00000311227		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000594493	ENST00000377214		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
In-frame	ENST00000594493	ENST00000539846		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
5CDS-5UTR	ENST00000594493	ENST00000598397		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000599561	ENST00000598810		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000599561	ENST00000593945		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000599561	ENST00000601519		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000599561	ENST00000311227		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000599561	ENST00000377214		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
Frame-shit	ENST00000599561	ENST00000539846		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
5CDS-5UTR	ENST00000599561	ENST00000598397		TCGA	LD	GBM	TCGA-32-5222-01A	RPS11	chr19	50001303	+	TEAD2	chr19	49854622	-
intron-5UTR	ENST00000416284	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000416284	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000416284	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000416284	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000416284	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000416284	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551619	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551619	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551619	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551619	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551619	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000550003	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000550003	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000550003	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000550003	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000550003	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551449	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551449	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551449	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000551449	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000551449	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000549456	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000549456	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000549456	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-intron	ENST00000549456	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
intron-5UTR	ENST00000549456	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	FAM19A2	chr12	62585693	-	PCBP2	chr12	53848510	+
5UTR-3CDS	ENST00000299293	ENST00000548804		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000299293	ENST00000337737		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000299293	ENST00000548198		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000299293	ENST00000551632		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000548804		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000337737		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000548198		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000549921	ENST00000551632		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000548804		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000337737		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000548198		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5UTR-3CDS	ENST00000550389	ENST00000551632		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000548804		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000337737		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000548198		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
intron-3CDS	ENST00000397997	ENST00000551632		TCGA	LD	GBM	TCGA-41-2571-01A	FRS2	chr12	69864310	+	DTX3	chr12	58002860	+
5CDS-5UTR	ENST00000266673	ENST00000393330		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000266673	ENST00000247829		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000266673	ENST00000546561		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000266673	ENST00000552128		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000266673	ENST00000552786		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000549735	ENST00000393330		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000549735	ENST00000247829		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000549735	ENST00000546561		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000549735	ENST00000552128		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000549735	ENST00000552786		TCGA	LD	GBM	TCGA-41-2571-01A	TMEM19	chr12	72083484	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000353364	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000353364	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000353364	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000353364	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000353364	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000353364	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000280377	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000280377	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000280377	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000280377	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000280377	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000393654	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000393654	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000393654	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000393654	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000393654	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-intron	ENST00000550632	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-intron	ENST00000550632	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-intron	ENST00000550632	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-intron	ENST00000550632	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
3UTR-5UTR	ENST00000550632	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000359282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000603815		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000437231		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000447282		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000549863		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000359462		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000546463		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000552296		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000312635	ENST00000552819		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000312635	ENST00000455667		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000312635	ENST00000439930		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-intron	ENST00000312635	ENST00000548933		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
5CDS-5UTR	ENST00000312635	ENST00000541275		TCGA	LD	GBM	TCGA-41-2571-01A	USP15	chr12	62654284	+	PCBP2	chr12	53848510	+
In-frame	ENST00000382368	ENST00000596731		TCGA	LD	GBM	TCGA-41-2572-01A	FBXL18	chr7	5540119	-	WDR83OS	chr19	12780047	-
In-frame	ENST00000382368	ENST00000222190		TCGA	LD	GBM	TCGA-41-2572-01A	FBXL18	chr7	5540119	-	WDR83OS	chr19	12780047	-
5CDS-intron	ENST00000382368	ENST00000600694		TCGA	LD	GBM	TCGA-41-2572-01A	FBXL18	chr7	5540119	-	WDR83OS	chr19	12780047	-
In-frame	ENST00000453700	ENST00000596731		TCGA	LD	GBM	TCGA-41-2572-01A	FBXL18	chr7	5540119	-	WDR83OS	chr19	12780047	-
In-frame	ENST00000453700	ENST00000222190		TCGA	LD	GBM	TCGA-41-2572-01A	FBXL18	chr7	5540119	-	WDR83OS	chr19	12780047	-
5CDS-intron	ENST00000453700	ENST00000600694		TCGA	LD	GBM	TCGA-41-2572-01A	FBXL18	chr7	5540119	-	WDR83OS	chr19	12780047	-
Frame-shit	ENST00000455789	ENST00000313010		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
Frame-shit	ENST00000455789	ENST00000393399		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
5CDS-5UTR	ENST00000455789	ENST00000535099		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
5CDS-intron	ENST00000455789	ENST00000525772		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
Frame-shit	ENST00000310015	ENST00000313010		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
Frame-shit	ENST00000310015	ENST00000393399		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
5CDS-5UTR	ENST00000310015	ENST00000535099		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
5CDS-intron	ENST00000310015	ENST00000525772		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
Frame-shit	ENST00000418194	ENST00000313010		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
Frame-shit	ENST00000418194	ENST00000393399		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
5CDS-5UTR	ENST00000418194	ENST00000535099		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
5CDS-intron	ENST00000418194	ENST00000525772		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
intron-3CDS	ENST00000483084	ENST00000313010		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
intron-3CDS	ENST00000483084	ENST00000393399		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
intron-5UTR	ENST00000483084	ENST00000535099		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
intron-intron	ENST00000483084	ENST00000525772		TCGA	LD	GBM	TCGA-41-2572-01A	SP3	chr2	174819601	-	PRCP	chr11	82564320	-
intron-3CDS	ENST00000207549	ENST00000368682		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000354650		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000229471		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000368667		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000368678		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000229470		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000356013		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000207549	ENST00000538466		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-intron	ENST00000207549	ENST00000476769		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000368682		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000354650		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000229471		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000368667		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000368678		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000229470		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000356013		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000412096	ENST00000538466		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-intron	ENST00000412096	ENST00000476769		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000368682		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000354650		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000229471		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000368667		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000368678		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000229470		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000356013		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000587504	ENST00000538466		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-intron	ENST00000587504	ENST00000476769		TCGA	LD	GBM	TCGA-41-2572-01A	UNC13D	chr17	73824038	-	FYN	chr6	111983150	-
intron-3CDS	ENST00000592864	ENST00000335523		TCGA	LD	GBM	TCGA-41-3915-01A	CACNA1A	chr19	13734692	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000360228	ENST00000335523		TCGA	LD	GBM	TCGA-41-3915-01A	CACNA1A	chr19	13734692	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000573710	ENST00000335523		TCGA	LD	GBM	TCGA-41-3915-01A	CACNA1A	chr19	13734692	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000574822	ENST00000335523		TCGA	LD	GBM	TCGA-41-3915-01A	CACNA1A	chr19	13734692	-	VSTM2B	chr19	30054753	+
5UTR-5UTR	ENST00000315367	ENST00000520686		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000521988		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-intron	ENST00000315367	ENST00000537541		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000518748		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-intron	ENST00000315367	ENST00000523580		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-intron	ENST00000315367	ENST00000520430		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000517858		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000517540		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000378861		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000524037		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-intron	ENST00000315367	ENST00000521617		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-intron	ENST00000315367	ENST00000519069		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000524107		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
5UTR-5UTR	ENST00000315367	ENST00000519969		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000520686		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000521988		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-intron	ENST00000519516	ENST00000537541		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000518748		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-intron	ENST00000519516	ENST00000523580		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-intron	ENST00000519516	ENST00000520430		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000517858		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000517540		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000378861		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000524037		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-intron	ENST00000519516	ENST00000521617		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-intron	ENST00000519516	ENST00000519069		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000524107		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-5UTR	ENST00000519516	ENST00000519969		TCGA	LD	GBM	TCGA-41-3915-01A	PLEKHF2	chr8	96146258	+	TRIQK	chr8	93966792	-
intron-3CDS	ENST00000522695	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000522695	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000522695	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-5UTR	ENST00000522695	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000524300	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000524300	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000524300	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000524300	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000523558	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000523558	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000523558	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000523558	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521210	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521210	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521210	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000521210	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000355780	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000355780	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000355780	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000355780	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000519961	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000519961	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000519961	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-5UTR	ENST00000519961	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000521727	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000521727	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000521727	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-5UTR	ENST00000521727	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521451	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521451	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521451	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000521451	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000522509	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000522509	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-3CDS	ENST00000522509	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
intron-5UTR	ENST00000522509	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000517542	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000517542	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000517542	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000517542	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000524104	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000524104	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000524104	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000524104	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000522962	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000522962	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000522962	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000522962	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521419	ENST00000519595		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521419	ENST00000518642		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000521419	ENST00000250173		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-5UTR	ENST00000521419	ENST00000520446		TCGA	LD	GBM	TCGA-41-3915-01A	STAU2	chr8	74659018	-	LRRC6	chr8	133673873	-
5UTR-3CDS	ENST00000520686	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000520686	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000520686	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000520686	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000520686	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000520686	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000521988	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000521988	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000521988	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000521988	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000521988	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000521988	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000537541	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000537541	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000537541	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000537541	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000537541	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000537541	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000518748	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000518748	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000518748	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000518748	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000518748	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000518748	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000523580	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000523580	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000523580	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000523580	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000523580	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000523580	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000520430	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000520430	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000520430	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000520430	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000520430	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000520430	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517858	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517858	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517858	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517858	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517858	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517858	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517540	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517540	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517540	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517540	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517540	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000517540	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000378861	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000378861	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000378861	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000378861	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000378861	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000378861	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524037	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524037	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524037	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524037	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524037	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524037	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000521617	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000521617	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000521617	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000521617	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000521617	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000521617	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000519069	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000519069	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000519069	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000519069	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000519069	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
intron-3CDS	ENST00000519069	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524107	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524107	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524107	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524107	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524107	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000524107	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000519969	ENST00000284878		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000519969	ENST00000400166		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000519969	ENST00000356275		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000519969	ENST00000400165		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000519969	ENST00000306618		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
5UTR-3CDS	ENST00000519969	ENST00000400169		TCGA	LD	GBM	TCGA-41-3915-01A	TRIQK	chr8	93966634	-	CXADR	chr21	18919345	+
In-frame	ENST00000394413	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394413	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394413	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394413	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000394413	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000530902	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000530902	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000530902	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000530902	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5UTR-intron	ENST00000530902	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000508545	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000508545	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000508545	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000508545	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000508545	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394414	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394414	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394414	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394414	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000394414	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394411	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394411	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394411	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394411	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000394411	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000453001	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000453001	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000453001	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000453001	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000453001	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000356826	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000356826	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000356826	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000356826	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000356826	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394410	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394410	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394410	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000394410	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000394410	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000336640	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000336640	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000336640	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000336640	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000336640	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000504198	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000504198	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000504198	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000504198	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000504198	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394409	ENST00000295688		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394409	ENST00000368259		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394409	ENST00000368261		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000394409	ENST00000472765		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000394409	ENST00000368256		TCGA	LD	GBM	TCGA-41-4097-01A	PPP2R2B	chr5	146017814	-	CCT3	chr1	156294880	-
In-frame	ENST00000354883	ENST00000254636		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000354883	ENST00000449247		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000354883	ENST00000410111		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000354883	ENST00000442664		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000354883	ENST00000409051		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
5CDS-intron	ENST00000354883	ENST00000490238		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000336733	ENST00000254636		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000336733	ENST00000449247		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000336733	ENST00000410111		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000336733	ENST00000442664		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000336733	ENST00000409051		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
5CDS-intron	ENST00000336733	ENST00000490238		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000536651	ENST00000254636		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000536651	ENST00000449247		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000536651	ENST00000410111		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000536651	ENST00000442664		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000536651	ENST00000409051		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-intron	ENST00000536651	ENST00000490238		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000413054	ENST00000254636		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000413054	ENST00000449247		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000413054	ENST00000410111		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000413054	ENST00000442664		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
In-frame	ENST00000413054	ENST00000409051		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
5CDS-intron	ENST00000413054	ENST00000490238		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000484768	ENST00000254636		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000484768	ENST00000449247		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000484768	ENST00000410111		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000484768	ENST00000442664		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000484768	ENST00000409051		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
3UTR-intron	ENST00000484768	ENST00000490238		TCGA	LD	GBM	TCGA-41-4097-01A	SLC25A26	chr3	66313803	+	IMMT	chr2	86374956	-
Frame-shit	ENST00000300737	ENST00000464356		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000300737	ENST00000348159		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000300737	ENST00000353795		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000300737	ENST00000340875		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000300737	ENST00000368240		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-intron	ENST00000300737	ENST00000360595		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
Frame-shit	ENST00000527651	ENST00000464356		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000527651	ENST00000348159		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000527651	ENST00000353795		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000527651	ENST00000340875		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000527651	ENST00000368240		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
5CDS-intron	ENST00000527651	ENST00000360595		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-3CDS	ENST00000527484	ENST00000464356		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000527484	ENST00000348159		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000527484	ENST00000353795		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000527484	ENST00000340875		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000527484	ENST00000368240		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-intron	ENST00000527484	ENST00000360595		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-3CDS	ENST00000533977	ENST00000464356		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000533977	ENST00000348159		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000533977	ENST00000353795		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000533977	ENST00000340875		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-5UTR	ENST00000533977	ENST00000368240		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-intron	ENST00000533977	ENST00000360595		TCGA	LD	GBM	TCGA-41-4097-01A	STIM1	chr11	3877639	+	MEF2D	chr1	156453222	-
intron-intron	ENST00000341156	ENST00000543727		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000341156	ENST00000550559		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000341156	ENST00000548851		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000341156	ENST00000454289		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000341156	ENST00000540550		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000341156	ENST00000323833		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000341156	ENST00000350762		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000341156	ENST00000497617		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000543727		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000550559		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000548851		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000454289		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000540550		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000323833		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000418555	ENST00000350762		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000418555	ENST00000497617		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000543727		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000550559		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000548851		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000454289		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000540550		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000323833		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000449184	ENST00000350762		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000449184	ENST00000497617		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000543727		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000550559		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000548851		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000454289		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000540550		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000323833		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550764	ENST00000350762		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000550764	ENST00000497617		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000543727		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000550559		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000548851		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000454289		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000540550		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000323833		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000552350	ENST00000350762		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000552350	ENST00000497617		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000543727		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000550559		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000548851		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000454289		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000540550		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000323833		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-intron	ENST00000550943	ENST00000350762		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000550943	ENST00000497617		TCGA	LD	GBM	TCGA-41-5651-01A	B4GALNT1	chr12	58020445	-	TSFM	chr12	58189960	+
Frame-shit	ENST00000357731	ENST00000370920		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
5CDS-intron	ENST00000357731	ENST00000477096		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
5CDS-intron	ENST00000357731	ENST00000254821		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
intron-3CDS	ENST00000306821	ENST00000370920		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
intron-intron	ENST00000306821	ENST00000477096		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
intron-intron	ENST00000306821	ENST00000254821		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
Frame-shit	ENST00000434200	ENST00000370920		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
5CDS-intron	ENST00000434200	ENST00000477096		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
5CDS-intron	ENST00000434200	ENST00000254821		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
intron-3CDS	ENST00000467479	ENST00000370920		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
intron-intron	ENST00000467479	ENST00000477096		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
intron-intron	ENST00000467479	ENST00000254821		TCGA	LD	GBM	TCGA-41-5651-01A	NEGR1	chr1	72748002	-	ZRANB2	chr1	71544391	-
In-frame	ENST00000552285	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000552285	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000315970	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000315970	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000439210	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000439210	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389146	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389146	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000413095	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000413095	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000551035	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000551035	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000435406	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000435406	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000257966	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000257966	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389142	ENST00000455537		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389142	ENST00000286452		TCGA	LD	GBM	TCGA-41-5651-01A	OS9	chr12	58090156	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000196169	ENST00000543426		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000196169	ENST00000228682		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000196169	ENST00000546141		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000377894	ENST00000543426		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000377894	ENST00000228682		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000377894	ENST00000546141		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
In-frame	ENST00000535286	ENST00000543426		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
Frame-shit	ENST00000535286	ENST00000228682		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
In-frame	ENST00000535286	ENST00000546141		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
5UTR-3CDS	ENST00000377881	ENST00000543426		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
5UTR-3CDS	ENST00000377881	ENST00000228682		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
5UTR-3CDS	ENST00000377881	ENST00000546141		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000463109	ENST00000543426		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000463109	ENST00000228682		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
intron-3CDS	ENST00000463109	ENST00000546141		TCGA	LD	GBM	TCGA-41-5651-01A	TDRD3	chr13	60971539	+	GLI1	chr12	57864100	+
5CDS-3UTR	ENST00000543727	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000543727	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000550559	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000550559	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000548851	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000548851	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000454289	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000454289	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
intron-3UTR	ENST00000540550	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
intron-3UTR	ENST00000540550	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000323833	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000323833	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000350762	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
5CDS-3UTR	ENST00000350762	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
3UTR-3UTR	ENST00000497617	ENST00000551553		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
3UTR-3UTR	ENST00000497617	ENST00000266646		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58186856	+	INHBE	chr12	57849877	+
Frame-shit	ENST00000543727	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000543727	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000543727	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000543727	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000543727	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000543727	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000543727	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000543727	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000543727	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000550559	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000550559	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000550559	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000550559	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000550559	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000550559	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000550559	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000550559	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000550559	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000548851	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000548851	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000548851	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000548851	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000548851	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000548851	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000548851	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000548851	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000548851	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000454289	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000454289	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000454289	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000454289	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000454289	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000454289	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000454289	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000454289	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000454289	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000540550	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000540550	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000540550	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000540550	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000540550	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000540550	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000540550	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000540550	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000540550	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000323833	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000323833	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000323833	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000323833	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000323833	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000323833	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000323833	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000323833	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000323833	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000350762	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000350762	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000350762	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
Frame-shit	ENST00000350762	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000350762	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000350762	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000350762	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000350762	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-intron	ENST00000350762	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-3CDS	ENST00000497617	ENST00000552285		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-3CDS	ENST00000497617	ENST00000315970		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-3CDS	ENST00000497617	ENST00000439210		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-3CDS	ENST00000497617	ENST00000389146		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-intron	ENST00000497617	ENST00000413095		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-intron	ENST00000497617	ENST00000551035		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-intron	ENST00000497617	ENST00000435406		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-intron	ENST00000497617	ENST00000257966		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
3UTR-intron	ENST00000497617	ENST00000389142		TCGA	LD	GBM	TCGA-41-5651-01A	TSFM	chr12	58180945	+	OS9	chr12	58109872	+
5CDS-3UTR	ENST00000299980	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
5CDS-3UTR	ENST00000423132	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
5CDS-3UTR	ENST00000433195	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
5CDS-3UTR	ENST00000569748	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
5CDS-3UTR	ENST00000393512	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
intron-3UTR	ENST00000570297	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
5CDS-3UTR	ENST00000564155	ENST00000437774		TCGA	LD	GBM	TCGA-4W-AA9R-01A	AP1G1	chr16	71772845	-	AFG3L1P	chr16	90050939	+
Frame-shit	ENST00000263921	ENST00000257290		TCGA	LD	GBM	TCGA-4W-AA9R-01A	CHIC2	chr4	54930349	-	PDGFRA	chr4	55151538	+
5CDS-intron	ENST00000263921	ENST00000508170		TCGA	LD	GBM	TCGA-4W-AA9R-01A	CHIC2	chr4	54930349	-	PDGFRA	chr4	55151538	+
Frame-shit	ENST00000512964	ENST00000257290		TCGA	LD	GBM	TCGA-4W-AA9R-01A	CHIC2	chr4	54930349	-	PDGFRA	chr4	55151538	+
5CDS-intron	ENST00000512964	ENST00000508170		TCGA	LD	GBM	TCGA-4W-AA9R-01A	CHIC2	chr4	54930349	-	PDGFRA	chr4	55151538	+
Frame-shit	ENST00000268695	ENST00000415766		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000268695	ENST00000561639		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000268695	ENST00000388833		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5CDS-intron	ENST00000268695	ENST00000562321		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
intron-3CDS	ENST00000542788	ENST00000415766		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
intron-3CDS	ENST00000542788	ENST00000561639		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
intron-3CDS	ENST00000542788	ENST00000388833		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
intron-intron	ENST00000542788	ENST00000562321		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5UTR-3CDS	ENST00000565364	ENST00000415766		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5UTR-3CDS	ENST00000565364	ENST00000561639		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5UTR-3CDS	ENST00000565364	ENST00000388833		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5UTR-intron	ENST00000565364	ENST00000562321		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000568311	ENST00000415766		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000568311	ENST00000561639		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000568311	ENST00000388833		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5CDS-intron	ENST00000568311	ENST00000562321		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000569433	ENST00000415766		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000569433	ENST00000561639		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
Frame-shit	ENST00000569433	ENST00000388833		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5CDS-intron	ENST00000569433	ENST00000562321		TCGA	LD	GBM	TCGA-4W-AA9R-01A	GALNS	chr16	88923166	-	TSNAXIP1	chr16	67858486	+
5UTR-5UTR	ENST00000538274	ENST00000378330		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000538274	ENST00000301030		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000538274	ENST00000563291		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000538274	ENST00000567736		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000258180	ENST00000378330		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000258180	ENST00000301030		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-intron	ENST00000258180	ENST00000563291		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-intron	ENST00000258180	ENST00000567736		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000566428	ENST00000378330		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000566428	ENST00000301030		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-intron	ENST00000566428	ENST00000563291		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-intron	ENST00000566428	ENST00000567736		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000567328	ENST00000378330		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000567328	ENST00000301030		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-intron	ENST00000567328	ENST00000563291		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
intron-intron	ENST00000567328	ENST00000567736		TCGA	LD	GBM	TCGA-4W-AA9R-01A	KIAA0513	chr16	85061464	+	ANKRD11	chr16	89484776	-
In-frame	ENST00000392894	ENST00000305354		TCGA	LD	GBM	TCGA-4W-AA9R-01A	RNF13	chr3	149570383	+	TM4SF4	chr3	149193610	+
In-frame	ENST00000344229	ENST00000305354		TCGA	LD	GBM	TCGA-4W-AA9R-01A	RNF13	chr3	149570383	+	TM4SF4	chr3	149193610	+
intron-3CDS	ENST00000361785	ENST00000305354		TCGA	LD	GBM	TCGA-4W-AA9R-01A	RNF13	chr3	149570383	+	TM4SF4	chr3	149193610	+
In-frame	ENST00000373203	ENST00000373176		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000373203	ENST00000373156		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000373203	ENST00000223836		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000344849	ENST00000373176		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000344849	ENST00000373156		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
In-frame	ENST00000344849	ENST00000223836		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
intron-3CDS	ENST00000480266	ENST00000373176		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
intron-3CDS	ENST00000480266	ENST00000373156		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
intron-3CDS	ENST00000480266	ENST00000223836		TCGA	LD	GBM	TCGA-4W-AA9S-01A	ENG	chr9	130605373	-	AK1	chr9	130630791	-
5CDS-intron	ENST00000544305	ENST00000495646		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000544305	ENST00000336689		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000544305	ENST00000437606		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000544305	ENST00000449467		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374630	ENST00000495646		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374630	ENST00000336689		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374630	ENST00000437606		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000374630	ENST00000449467		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000400191	ENST00000495646		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000400191	ENST00000336689		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000400191	ENST00000437606		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000400191	ENST00000449467		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374632	ENST00000495646		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374632	ENST00000336689		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374632	ENST00000437606		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000374632	ENST00000449467		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374627	ENST00000495646		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374627	ENST00000336689		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-intron	ENST00000374627	ENST00000437606		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
5CDS-5UTR	ENST00000374627	ENST00000449467		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
3UTR-intron	ENST00000465676	ENST00000495646		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
3UTR-intron	ENST00000465676	ENST00000336689		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
3UTR-intron	ENST00000465676	ENST00000437606		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
3UTR-5UTR	ENST00000465676	ENST00000449467		TCGA	LD	GBM	TCGA-4W-AA9S-01A	EPHB2	chr1	23191705	+	ASAP3	chr1	23782687	-
intron-5UTR	ENST00000426327	ENST00000265755		TCGA	LD	GBM	TCGA-4W-AA9S-01A	GATSL2	chr7	74433263	+	GTF2IRD1	chr7	73922405	+
intron-5UTR	ENST00000426327	ENST00000455841		TCGA	LD	GBM	TCGA-4W-AA9S-01A	GATSL2	chr7	74433263	+	GTF2IRD1	chr7	73922405	+
intron-5UTR	ENST00000426327	ENST00000424337		TCGA	LD	GBM	TCGA-4W-AA9S-01A	GATSL2	chr7	74433263	+	GTF2IRD1	chr7	73922405	+
intron-5UTR	ENST00000426327	ENST00000476977		TCGA	LD	GBM	TCGA-4W-AA9S-01A	GATSL2	chr7	74433263	+	GTF2IRD1	chr7	73922405	+
intron-5UTR	ENST00000426327	ENST00000489094		TCGA	LD	GBM	TCGA-4W-AA9S-01A	GATSL2	chr7	74433263	+	GTF2IRD1	chr7	73922405	+
intron-3CDS	ENST00000382148	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382148	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382148	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382148	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382148	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382148	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382148	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000447367	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000447367	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000447367	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000447367	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000447367	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000447367	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000447367	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382150	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382150	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382150	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382150	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382150	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382150	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382150	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382152	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382152	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382152	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382152	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382152	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382152	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382152	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-3CDS	ENST00000509207	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-3CDS	ENST00000509207	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-3CDS	ENST00000509207	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-3CDS	ENST00000509207	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-intron	ENST00000509207	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-intron	ENST00000509207	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
5UTR-intron	ENST00000509207	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382149	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382149	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382149	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000382149	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382149	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382149	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000382149	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000359001	ENST00000398051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000359001	ENST00000398052		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000359001	ENST00000504933		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-3CDS	ENST00000359001	ENST00000345167		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000359001	ENST00000503518		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000359001	ENST00000442472		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
intron-intron	ENST00000359001	ENST00000509545		TCGA	LD	GBM	TCGA-4W-AA9S-01A	KCNIP4	chr4	21546013	-	GRK4	chr4	3005958	+
In-frame	ENST00000437198	ENST00000371073		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
In-frame	ENST00000437198	ENST00000290039		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000437198	ENST00000495994		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
In-frame	ENST00000420015	ENST00000371073		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
In-frame	ENST00000420015	ENST00000290039		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000420015	ENST00000495994		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
Frame-shit	ENST00000341484	ENST00000371073		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
Frame-shit	ENST00000341484	ENST00000290039		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000341484	ENST00000495994		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
In-frame	ENST00000539279	ENST00000371073		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
In-frame	ENST00000539279	ENST00000290039		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000539279	ENST00000495994		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
intron-3CDS	ENST00000566021	ENST00000371073		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
intron-3CDS	ENST00000566021	ENST00000290039		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
intron-3UTR	ENST00000566021	ENST00000495994		TCGA	LD	GBM	TCGA-4W-AA9S-01A	PARN	chr16	14687158	-	CACHD1	chr1	65016277	+
5CDS-intron	ENST00000426263	ENST00000431635		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000426263	ENST00000236051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000426263	ENST00000472982		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
intron-intron	ENST00000475162	ENST00000431635		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
intron-intron	ENST00000475162	ENST00000236051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
intron-intron	ENST00000475162	ENST00000472982		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000415851	ENST00000431635		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000415851	ENST00000236051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000415851	ENST00000472982		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000372500	ENST00000431635		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000372500	ENST00000236051		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
5CDS-intron	ENST00000372500	ENST00000472982		TCGA	LD	GBM	TCGA-4W-AA9S-01A	SLC2A1	chr1	43424305	-	EBNA1BP2	chr1	43681064	-
In-frame	ENST00000360909	ENST00000355238		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
In-frame	ENST00000360909	ENST00000369622		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
In-frame	ENST00000351081	ENST00000355238		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
In-frame	ENST00000351081	ENST00000369622		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
In-frame	ENST00000395125	ENST00000355238		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
In-frame	ENST00000395125	ENST00000369622		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
Frame-shit	ENST00000556135	ENST00000355238		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
Frame-shit	ENST00000556135	ENST00000369622		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
intron-3CDS	ENST00000553966	ENST00000355238		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
intron-3CDS	ENST00000553966	ENST00000369622		TCGA	LD	GBM	TCGA-4W-AA9T-01A	DAAM1	chr14	59758024	+	SYNCRIP	chr6	86329135	-
In-frame	ENST00000294383	ENST00000371269		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
In-frame	ENST00000294383	ENST00000537443		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
In-frame	ENST00000294383	ENST00000535035		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
In-frame	ENST00000407756	ENST00000371269		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
In-frame	ENST00000407756	ENST00000537443		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
In-frame	ENST00000407756	ENST00000535035		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
intron-3CDS	ENST00000484447	ENST00000371269		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
intron-3CDS	ENST00000484447	ENST00000537443		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
intron-3CDS	ENST00000484447	ENST00000535035		TCGA	LD	GBM	TCGA-4W-AA9T-01A	USP24	chr1	55637229	-	DHCR24	chr1	55337286	-
Frame-shit	ENST00000354700	ENST00000378891		TCGA	LD	GBM	TCGA-76-4926-01B	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
Frame-shit	ENST00000354700	ENST00000378888		TCGA	LD	GBM	TCGA-76-4926-01B	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
5UTR-3CDS	ENST00000353662	ENST00000378891		TCGA	LD	GBM	TCGA-76-4926-01B	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
5UTR-3CDS	ENST00000353662	ENST00000378888		TCGA	LD	GBM	TCGA-76-4926-01B	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
intron-3CDS	ENST00000379037	ENST00000378891		TCGA	LD	GBM	TCGA-76-4926-01B	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
intron-3CDS	ENST00000379037	ENST00000378888		TCGA	LD	GBM	TCGA-76-4926-01B	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
5UTR-intron	ENST00000372037	ENST00000371837		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
5UTR-intron	ENST00000372037	ENST00000487618		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
5UTR-5UTR	ENST00000372037	ENST00000336233		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
5UTR-5UTR	ENST00000372037	ENST00000456827		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
intron-intron	ENST00000480152	ENST00000371837		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
intron-intron	ENST00000480152	ENST00000487618		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
intron-5UTR	ENST00000480152	ENST00000336233		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
intron-5UTR	ENST00000480152	ENST00000456827		TCGA	LD	GBM	TCGA-76-4926-01B	BMPR1A	chr10	88516676	+	LIPA	chr10	91007406	-
Frame-shit	ENST00000371121	ENST00000217971		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
5CDS-intron	ENST00000371121	ENST00000535419		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
Frame-shit	ENST00000371122	ENST00000217971		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
5CDS-intron	ENST00000371122	ENST00000535419		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
Frame-shit	ENST00000371123	ENST00000217971		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
5CDS-intron	ENST00000371123	ENST00000535419		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
intron-3CDS	ENST00000478420	ENST00000217971		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
intron-intron	ENST00000478420	ENST00000535419		TCGA	LD	GBM	TCGA-76-4926-01B	SMARCA1	chrX	128599497	-	PGRMC1	chrX	118374272	+
5CDS-intron	ENST00000218089	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-5UTR	ENST00000218089	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000218089	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-5UTR	ENST00000469481	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
intron-intron	ENST00000469481	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-5UTR	ENST00000354548	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000354548	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-5UTR	ENST00000371160	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371160	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-5UTR	ENST00000371157	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371157	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-5UTR	ENST00000371145	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371145	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000425146		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-5UTR	ENST00000371144	ENST00000446737		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000372010		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000519681		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000372007		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000518291		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000484442		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000262836		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000360648		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5CDS-intron	ENST00000371144	ENST00000417227		TCGA	LD	GBM	TCGA-76-4926-01B	STAG2	chrX	123191827	+	PAK3	chrX	110257056	+
5UTR-intron	ENST00000290776	ENST00000304031		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000290776	ENST00000402541		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000290776	ENST00000406618		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000537605	ENST00000304031		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000537605	ENST00000402541		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000537605	ENST00000406618		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000535318	ENST00000304031		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000535318	ENST00000402541		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
5UTR-intron	ENST00000535318	ENST00000406618		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
intron-intron	ENST00000565874	ENST00000304031		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
intron-intron	ENST00000565874	ENST00000402541		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
intron-intron	ENST00000565874	ENST00000406618		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
intron-intron	ENST00000565951	ENST00000304031		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
intron-intron	ENST00000565951	ENST00000402541		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
intron-intron	ENST00000565951	ENST00000406618		TCGA	LD	GBM	TCGA-76-4929-01A	CPNE2	chr16	57126702	+	HS1BP3	chr2	20760275	-
In-frame	ENST00000336078	ENST00000259727		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
5CDS-intron	ENST00000336078	ENST00000544145		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
In-frame	ENST00000591083	ENST00000259727		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
5CDS-intron	ENST00000591083	ENST00000544145		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
In-frame	ENST00000589288	ENST00000259727		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
5CDS-intron	ENST00000589288	ENST00000544145		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
In-frame	ENST00000591230	ENST00000259727		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
5CDS-intron	ENST00000591230	ENST00000544145		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
In-frame	ENST00000591808	ENST00000259727		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
5CDS-intron	ENST00000591808	ENST00000544145		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
intron-3CDS	ENST00000588956	ENST00000259727		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
intron-intron	ENST00000588956	ENST00000544145		TCGA	LD	GBM	TCGA-76-4929-01A	ZNF532	chr18	56621031	+	GMPR	chr6	16247073	+
In-frame	ENST00000255409	ENST00000393386		TCGA	LD	GBM	TCGA-76-4931-01A	CHI3L1	chr1	203153704	-	PTPRZ1	chr7	121668606	+
In-frame	ENST00000255409	ENST00000449182		TCGA	LD	GBM	TCGA-76-4931-01A	CHI3L1	chr1	203153704	-	PTPRZ1	chr7	121668606	+
5CDS-intron	ENST00000255409	ENST00000483028		TCGA	LD	GBM	TCGA-76-4931-01A	CHI3L1	chr1	203153704	-	PTPRZ1	chr7	121668606	+
Frame-shit	ENST00000337288	ENST00000304031		TCGA	LD	GBM	TCGA-76-4931-01A	STARD7	chr2	96852955	-	HS1BP3	chr2	20824652	-
5CDS-intron	ENST00000337288	ENST00000402541		TCGA	LD	GBM	TCGA-76-4931-01A	STARD7	chr2	96852955	-	HS1BP3	chr2	20824652	-
5CDS-intron	ENST00000337288	ENST00000406618		TCGA	LD	GBM	TCGA-76-4931-01A	STARD7	chr2	96852955	-	HS1BP3	chr2	20824652	-
5UTR-3CDS	ENST00000462501	ENST00000304031		TCGA	LD	GBM	TCGA-76-4931-01A	STARD7	chr2	96852955	-	HS1BP3	chr2	20824652	-
5UTR-intron	ENST00000462501	ENST00000402541		TCGA	LD	GBM	TCGA-76-4931-01A	STARD7	chr2	96852955	-	HS1BP3	chr2	20824652	-
5UTR-intron	ENST00000462501	ENST00000406618		TCGA	LD	GBM	TCGA-76-4931-01A	STARD7	chr2	96852955	-	HS1BP3	chr2	20824652	-
5UTR-intron	ENST00000521452	ENST00000327300		TCGA	LD	GBM	TCGA-76-4932-01A	TMEM200B	chr1	29450368	-	KHDRBS1	chr1	32525764	+
5UTR-intron	ENST00000521452	ENST00000307714		TCGA	LD	GBM	TCGA-76-4932-01A	TMEM200B	chr1	29450368	-	KHDRBS1	chr1	32525764	+
5UTR-intron	ENST00000521452	ENST00000492989		TCGA	LD	GBM	TCGA-76-4932-01A	TMEM200B	chr1	29450368	-	KHDRBS1	chr1	32525764	+
intron-intron	ENST00000420504	ENST00000327300		TCGA	LD	GBM	TCGA-76-4932-01A	TMEM200B	chr1	29450368	-	KHDRBS1	chr1	32525764	+
intron-intron	ENST00000420504	ENST00000307714		TCGA	LD	GBM	TCGA-76-4932-01A	TMEM200B	chr1	29450368	-	KHDRBS1	chr1	32525764	+
intron-intron	ENST00000420504	ENST00000492989		TCGA	LD	GBM	TCGA-76-4932-01A	TMEM200B	chr1	29450368	-	KHDRBS1	chr1	32525764	+
Frame-shit	ENST00000302516	ENST00000481739		TCGA	LD	GBM	TCGA-OX-A56R-01A	SF3B3	chr16	70597953	+	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000302516	ENST00000356384		TCGA	LD	GBM	TCGA-OX-A56R-01A	SF3B3	chr16	70597953	+	RXRA	chr9	137293478	+
5CDS-intron	ENST00000302516	ENST00000540193		TCGA	LD	GBM	TCGA-OX-A56R-01A	SF3B3	chr16	70597953	+	RXRA	chr9	137293478	+
Frame-shit	ENST00000555447	ENST00000336735		TCGA	LD	GBM	TCGA-OX-A56R-01A	STON2	chr14	81837332	-	SEL1L	chr14	81972585	-
Frame-shit	ENST00000555447	ENST00000555824		TCGA	LD	GBM	TCGA-OX-A56R-01A	STON2	chr14	81837332	-	SEL1L	chr14	81972585	-
In-frame	ENST00000267540	ENST00000336735		TCGA	LD	GBM	TCGA-OX-A56R-01A	STON2	chr14	81837332	-	SEL1L	chr14	81972585	-
In-frame	ENST00000267540	ENST00000555824		TCGA	LD	GBM	TCGA-OX-A56R-01A	STON2	chr14	81837332	-	SEL1L	chr14	81972585	-
intron-3CDS	ENST00000556280	ENST00000336735		TCGA	LD	GBM	TCGA-OX-A56R-01A	STON2	chr14	81837332	-	SEL1L	chr14	81972585	-
intron-3CDS	ENST00000556280	ENST00000555824		TCGA	LD	GBM	TCGA-OX-A56R-01A	STON2	chr14	81837332	-	SEL1L	chr14	81972585	-
5UTR-3CDS	ENST00000568446	ENST00000366898		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
5UTR-3CDS	ENST00000568446	ENST00000366897		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
5UTR-3CDS	ENST00000568446	ENST00000366896		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
5UTR-5UTR	ENST00000568446	ENST00000366894		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
5UTR-5UTR	ENST00000568446	ENST00000338468		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
5UTR-5UTR	ENST00000568446	ENST00000366892		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000567225	ENST00000366898		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000567225	ENST00000366897		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000567225	ENST00000366896		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000567225	ENST00000366894		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000567225	ENST00000338468		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000567225	ENST00000366892		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000288177	ENST00000366898		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000288177	ENST00000366897		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000288177	ENST00000366896		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000288177	ENST00000366894		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000288177	ENST00000338468		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000288177	ENST00000366892		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000565637	ENST00000366898		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000565637	ENST00000366897		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000565637	ENST00000366896		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000565637	ENST00000366894		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000565637	ENST00000338468		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000565637	ENST00000366892		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000565100	ENST00000366898		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000565100	ENST00000366897		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000565100	ENST00000366896		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000565100	ENST00000366894		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000565100	ENST00000338468		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000565100	ENST00000366892		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000564230	ENST00000366898		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000564230	ENST00000366897		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-3CDS	ENST00000564230	ENST00000366896		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000564230	ENST00000366894		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000564230	ENST00000338468		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
intron-5UTR	ENST00000564230	ENST00000366892		TCGA	LD	GBM	TCGA-OX-A56R-01A	ZNF19	chr16	71528857	-	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000336761	ENST00000372583		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000336761	ENST00000372584		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000336761	ENST00000247584		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000336761	ENST00000429157		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000336761	ENST00000460604		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000233078	ENST00000372583		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000233078	ENST00000372584		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000233078	ENST00000247584		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000233078	ENST00000429157		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000233078	ENST00000460604		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000586579	ENST00000372583		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000586579	ENST00000372584		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000586579	ENST00000247584		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000586579	ENST00000429157		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
intron-intron	ENST00000586579	ENST00000460604		TCGA	LD	GBM	TCGA-RR-A6KA-01A	DAZAP1	chr19	1430361	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000261900	ENST00000550574		TCGA	LD	GBM	TCGA-RR-A6KB-01A	CCNT1	chr12	49091921	-	TUBA1C	chr12	49666036	+
5CDS-intron	ENST00000261900	ENST00000541364		TCGA	LD	GBM	TCGA-RR-A6KB-01A	CCNT1	chr12	49091921	-	TUBA1C	chr12	49666036	+
5CDS-intron	ENST00000261900	ENST00000301072		TCGA	LD	GBM	TCGA-RR-A6KB-01A	CCNT1	chr12	49091921	-	TUBA1C	chr12	49666036	+
5CDS-intron	ENST00000261900	ENST00000549183		TCGA	LD	GBM	TCGA-RR-A6KB-01A	CCNT1	chr12	49091921	-	TUBA1C	chr12	49666036	+
Frame-shit	ENST00000272427	ENST00000220763		TCGA	LD	GBM	TCGA-RR-A6KB-01A	EXOC6B	chr2	72945232	-	CPQ	chr8	97892026	+
5CDS-intron	ENST00000272427	ENST00000529551		TCGA	LD	GBM	TCGA-RR-A6KB-01A	EXOC6B	chr2	72945232	-	CPQ	chr8	97892026	+
intron-3CDS	ENST00000490919	ENST00000220763		TCGA	LD	GBM	TCGA-RR-A6KB-01A	EXOC6B	chr2	72945232	-	CPQ	chr8	97892026	+
intron-intron	ENST00000490919	ENST00000529551		TCGA	LD	GBM	TCGA-RR-A6KB-01A	EXOC6B	chr2	72945232	-	CPQ	chr8	97892026	+
Frame-shit	ENST00000410104	ENST00000220763		TCGA	LD	GBM	TCGA-RR-A6KB-01A	EXOC6B	chr2	72945232	-	CPQ	chr8	97892026	+
5CDS-intron	ENST00000410104	ENST00000529551		TCGA	LD	GBM	TCGA-RR-A6KB-01A	EXOC6B	chr2	72945232	-	CPQ	chr8	97892026	+
5CDS-5UTR	ENST00000536525	ENST00000393791		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000536525	ENST00000356411		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000536525	ENST00000424809		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000536525	ENST00000393797		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000536525	ENST00000550288		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000536525	ENST00000430041		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000536525	ENST00000550454		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000397909	ENST00000393791		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000397909	ENST00000356411		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000397909	ENST00000424809		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000397909	ENST00000393797		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000397909	ENST00000550288		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000397909	ENST00000430041		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000397909	ENST00000550454		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000228327	ENST00000393791		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000228327	ENST00000356411		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000228327	ENST00000424809		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000228327	ENST00000393797		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000228327	ENST00000550288		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000228327	ENST00000430041		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000228327	ENST00000550454		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000266692	ENST00000393791		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000266692	ENST00000356411		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000266692	ENST00000424809		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000266692	ENST00000393797		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000266692	ENST00000550288		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000266692	ENST00000430041		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-intron	ENST00000266692	ENST00000550454		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000552300	ENST00000393791		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000552300	ENST00000356411		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000552300	ENST00000424809		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000552300	ENST00000393797		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000552300	ENST00000550288		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-intron	ENST00000552300	ENST00000430041		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-intron	ENST00000552300	ENST00000550454		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000541270	ENST00000393791		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000541270	ENST00000356411		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000541270	ENST00000424809		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000541270	ENST00000393797		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-5UTR	ENST00000541270	ENST00000550288		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-intron	ENST00000541270	ENST00000430041		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
intron-intron	ENST00000541270	ENST00000550454		TCGA	LD	GBM	TCGA-RR-A6KB-01A	NAV3	chr12	78452895	+	ARHGAP9	chr12	57873207	-
5CDS-5UTR	ENST00000359019	ENST00000311083		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000359019	ENST00000552330		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000359019	ENST00000546966		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000359019	ENST00000547435		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000311083		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000552330		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000546966		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000547435		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000311083		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000552330		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000546966		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000547435		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000311083		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000552330		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000546966		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000547435		TCGA	LD	GBM	TCGA-RR-A6KB-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
In-frame	ENST00000356126	ENST00000504968		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
In-frame	ENST00000356126	ENST00000399100		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
In-frame	ENST00000356126	ENST00000265175		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
In-frame	ENST00000357146	ENST00000504968		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
In-frame	ENST00000357146	ENST00000399100		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
In-frame	ENST00000357146	ENST00000265175		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
5UTR-3CDS	ENST00000581618	ENST00000504968		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
5UTR-3CDS	ENST00000581618	ENST00000399100		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
5UTR-3CDS	ENST00000581618	ENST00000265175		TCGA	LD	GBM	TCGA-RR-A6KC-01A	PSMD12	chr17	65362528	-	SEC24B	chr4	110427487	+
Frame-shit	ENST00000336665	ENST00000450966		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000336665	ENST00000251722		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000336665	ENST00000427112		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000336665	ENST00000496298		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000336665	ENST00000409945		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000336665	ENST00000443711		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000304032	ENST00000450966		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000304032	ENST00000251722		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000304032	ENST00000427112		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000304032	ENST00000496298		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000304032	ENST00000409945		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000304032	ENST00000443711		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000409538	ENST00000450966		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000409538	ENST00000251722		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000409538	ENST00000427112		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000409538	ENST00000496298		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000409538	ENST00000409945		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000409538	ENST00000443711		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000428334	ENST00000450966		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000428334	ENST00000251722		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000428334	ENST00000427112		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000428334	ENST00000496298		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000428334	ENST00000409945		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000428334	ENST00000443711		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000409457	ENST00000450966		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000409457	ENST00000251722		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000409457	ENST00000427112		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000409457	ENST00000496298		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000409457	ENST00000409945		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
5CDS-intron	ENST00000409457	ENST00000443711		TCGA	RV	HNSC	TCGA-CQ-6222-01A	AGAP1	chr2	236659132	+	USP40	chr2	234389943	-
Frame-shit	ENST00000257497	ENST00000314888		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000257497	ENST00000540444		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
5CDS-intron	ENST00000257497	ENST00000464379		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000376911	ENST00000314888		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000376911	ENST00000540444		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
5CDS-intron	ENST00000376911	ENST00000464379		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000491192	ENST00000314888		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000491192	ENST00000540444		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
5CDS-intron	ENST00000491192	ENST00000464379		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ANXA1	chr9	75785309	+	TLN1	chr9	35720506	-
In-frame	ENST00000311380	ENST00000369701		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
5CDS-intron	ENST00000311380	ENST00000369699		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
Frame-shit	ENST00000375250	ENST00000369701		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
5CDS-intron	ENST00000375250	ENST00000369699		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
intron-3CDS	ENST00000492028	ENST00000369701		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
intron-intron	ENST00000492028	ENST00000369699		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
Frame-shit	ENST00000344936	ENST00000369701		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
5CDS-intron	ENST00000344936	ENST00000369699		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
Frame-shit	ENST00000396144	ENST00000369701		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
5CDS-intron	ENST00000396144	ENST00000369699		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
Frame-shit	ENST00000375245	ENST00000369701		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
5CDS-intron	ENST00000375245	ENST00000369699		TCGA	RV	HNSC	TCGA-CN-4727-01A	ARHGAP12	chr10	32197100	-	SORCS3	chr10	106916896	+
5CDS-5UTR	ENST00000263674	ENST00000393597		TCGA	RV	HNSC	TCGA-CN-A498-01A	ARHGEF17	chr11	73022875	+	P2RY2	chr11	72945201	+
5CDS-5UTR	ENST00000263674	ENST00000311131		TCGA	RV	HNSC	TCGA-CN-A498-01A	ARHGEF17	chr11	73022875	+	P2RY2	chr11	72945201	+
5CDS-5UTR	ENST00000263674	ENST00000393596		TCGA	RV	HNSC	TCGA-CN-A498-01A	ARHGEF17	chr11	73022875	+	P2RY2	chr11	72945201	+
intron-5UTR	ENST00000536170	ENST00000393597		TCGA	RV	HNSC	TCGA-CN-A498-01A	ARHGEF17	chr11	73022875	+	P2RY2	chr11	72945201	+
intron-5UTR	ENST00000536170	ENST00000311131		TCGA	RV	HNSC	TCGA-CN-A498-01A	ARHGEF17	chr11	73022875	+	P2RY2	chr11	72945201	+
intron-5UTR	ENST00000536170	ENST00000393596		TCGA	RV	HNSC	TCGA-CN-A498-01A	ARHGEF17	chr11	73022875	+	P2RY2	chr11	72945201	+
Frame-shit	ENST00000566621	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
Frame-shit	ENST00000566621	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
5CDS-intron	ENST00000566621	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
Frame-shit	ENST00000437989	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
Frame-shit	ENST00000437989	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
5CDS-intron	ENST00000437989	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
Frame-shit	ENST00000569302	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
Frame-shit	ENST00000569302	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
5CDS-intron	ENST00000569302	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000567389	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000567389	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-intron	ENST00000567389	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000562877	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000562877	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-intron	ENST00000562877	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000338183	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000338183	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-intron	ENST00000338183	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000565792	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000565792	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-intron	ENST00000565792	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000562489	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000562489	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-intron	ENST00000562489	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000563167	ENST00000415757		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-3CDS	ENST00000563167	ENST00000389232		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
intron-intron	ENST00000563167	ENST00000559917		TCGA	RV	HNSC	TCGA-HD-8224-01A	C15orf41	chr15	36872162	+	RYR3	chr15	34014916	+
3UTR-3CDS	ENST00000517298	ENST00000418930		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
3UTR-3CDS	ENST00000517298	ENST00000256117		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
3UTR-3CDS	ENST00000517298	ENST00000416274		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
3UTR-3UTR	ENST00000517298	ENST00000519128		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
3UTR-5UTR	ENST00000517298	ENST00000517476		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
3UTR-5UTR	ENST00000517298	ENST00000521429		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
Frame-shit	ENST00000321764	ENST00000418930		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
Frame-shit	ENST00000321764	ENST00000256117		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
Frame-shit	ENST00000321764	ENST00000416274		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
5CDS-3UTR	ENST00000321764	ENST00000519128		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
5CDS-5UTR	ENST00000321764	ENST00000517476		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
5CDS-5UTR	ENST00000321764	ENST00000521429		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CA13	chr8	86163166	+	E2F5	chr8	86114382	+
5UTR-5UTR	ENST00000417172	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-intron	ENST00000417172	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-5UTR	ENST00000361388	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-intron	ENST00000361388	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-5UTR	ENST00000422748	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-intron	ENST00000422748	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-5UTR	ENST00000361675	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-intron	ENST00000361675	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-5UTR	ENST00000361901	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
5UTR-intron	ENST00000361901	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-5UTR	ENST00000393118	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-intron	ENST00000393118	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-5UTR	ENST00000495522	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-intron	ENST00000495522	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-5UTR	ENST00000424922	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-intron	ENST00000424922	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-5UTR	ENST00000543443	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-intron	ENST00000543443	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-5UTR	ENST00000466704	ENST00000457545		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
intron-intron	ENST00000466704	ENST00000423958		TCGA	RV	HNSC	TCGA-CV-7407-01A	CALD1	chr7	134528722	+	AKR1B15	chr7	134249350	+
Frame-shit	ENST00000225726	ENST00000258399		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
Frame-shit	ENST00000225726	ENST00000454775		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000225726	ENST00000415516		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000225726	ENST00000418019		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000225726	ENST00000338465		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-intron	ENST00000225726	ENST00000475553		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
Frame-shit	ENST00000403162	ENST00000258399		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
Frame-shit	ENST00000403162	ENST00000454775		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000403162	ENST00000415516		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000403162	ENST00000418019		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000403162	ENST00000338465		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-intron	ENST00000403162	ENST00000475553		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
Frame-shit	ENST00000582252	ENST00000258399		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
Frame-shit	ENST00000582252	ENST00000454775		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000582252	ENST00000415516		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000582252	ENST00000418019		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-5UTR	ENST00000582252	ENST00000338465		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
5CDS-intron	ENST00000582252	ENST00000475553		TCGA	RV	HNSC	TCGA-F7-A50I-01A	CCDC47	chr17	61838274	-	USP37	chr2	219418447	-
In-frame	ENST00000366767	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366767	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366767	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000366767	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366769	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366769	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366769	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000366769	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366764	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366764	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366764	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000366764	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000334218	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000334218	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000334218	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000334218	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366766	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366766	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366766	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000366766	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000535525	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000535525	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000535525	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000535525	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366765	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366765	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000366765	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5CDS-intron	ENST00000366765	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5UTR-3CDS	ENST00000488131	ENST00000401604		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5UTR-3CDS	ENST00000488131	ENST00000373985		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5UTR-3CDS	ENST00000488131	ENST00000373980		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
5UTR-intron	ENST00000488131	ENST00000373975		TCGA	RV	HNSC	TCGA-CV-7407-01A	CDC42BPA	chr1	227268594	-	PRKG1	chr10	52912924	+
In-frame	ENST00000380050	ENST00000297431		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
5CDS-5UTR	ENST00000380050	ENST00000545943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
5CDS-5UTR	ENST00000380050	ENST00000447452		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
5CDS-5UTR	ENST00000380050	ENST00000485726		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-3CDS	ENST00000265741	ENST00000297431		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000265741	ENST00000545943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000265741	ENST00000447452		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000265741	ENST00000485726		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-3CDS	ENST00000406263	ENST00000297431		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000406263	ENST00000545943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000406263	ENST00000447452		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000406263	ENST00000485726		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-3CDS	ENST00000436577	ENST00000297431		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000436577	ENST00000545943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000436577	ENST00000447452		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000436577	ENST00000485726		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-3CDS	ENST00000496279	ENST00000297431		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000496279	ENST00000545943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000496279	ENST00000447452		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
intron-5UTR	ENST00000496279	ENST00000485726		TCGA	RV	HNSC	TCGA-DQ-7589-01A	CDK14	chr7	90233563	+	ORC5	chr7	103844682	-
5CDS-5UTR	ENST00000274695	ENST00000420517		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000274695	ENST00000470361		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000274695	ENST00000452583		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000274695	ENST00000432997		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000274695	ENST00000358316		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378624	ENST00000420517		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000378624	ENST00000470361		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378624	ENST00000452583		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378624	ENST00000432997		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378624	ENST00000358316		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378610	ENST00000420517		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000378610	ENST00000470361		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378610	ENST00000452583		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378610	ENST00000432997		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000378610	ENST00000358316		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000476517	ENST00000420517		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
intron-3UTR	ENST00000476517	ENST00000470361		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000476517	ENST00000452583		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000476517	ENST00000432997		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000476517	ENST00000358316		TCGA	RV	HNSC	TCGA-BA-A4II-01A	CDKAL1	chr6	20649608	+	KCNMB2	chr3	178525131	+
intron-3CDS	ENST00000309534	ENST00000352241		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000448226		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000472437		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000328528		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000314589		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000394355		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000314557		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000394351		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000309534	ENST00000531774		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-intron	ENST00000309534	ENST00000394348		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000352241		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000448226		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000472437		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000328528		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000314589		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000394355		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000314557		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000394351		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000398392	ENST00000531774		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-intron	ENST00000398392	ENST00000394348		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000352241		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000448226		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000472437		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000328528		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000314589		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000394355		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000314557		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000394351		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000482016	ENST00000531774		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-intron	ENST00000482016	ENST00000394348		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000352241		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000448226		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000472437		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000328528		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000314589		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000394355		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000314557		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000394351		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-3CDS	ENST00000462901	ENST00000531774		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
5UTR-intron	ENST00000462901	ENST00000394348		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000352241		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000448226		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000472437		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000328528		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000314589		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000394355		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000314557		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000394351		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000474441	ENST00000531774		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
intron-intron	ENST00000474441	ENST00000394348		TCGA	RV	HNSC	TCGA-CV-5432-01A	CGGBP1	chr3	88190120	-	MITF	chr3	69998202	+
In-frame	ENST00000547956	ENST00000392842		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000547956	ENST00000357881		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
5CDS-intron	ENST00000547956	ENST00000229387		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000549260	ENST00000392842		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000549260	ENST00000357881		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
5CDS-intron	ENST00000549260	ENST00000229387		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000303694	ENST00000392842		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000303694	ENST00000357881		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
5CDS-intron	ENST00000303694	ENST00000229387		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000546689	ENST00000392842		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
In-frame	ENST00000546689	ENST00000357881		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
5CDS-intron	ENST00000546689	ENST00000229387		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
intron-3CDS	ENST00000550711	ENST00000392842		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
intron-3CDS	ENST00000550711	ENST00000357881		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
intron-intron	ENST00000550711	ENST00000229387		TCGA	RV	HNSC	TCGA-CV-7183-01A	CHST11	chr12	104995769	+	RFX4	chr12	107075771	+
5CDS-intron	ENST00000400337	ENST00000324460		TCGA	RV	HNSC	TCGA-CV-7418-01A	COL18A1	chr21	46932177	+	HSPA5	chr9	128003622	-
5CDS-intron	ENST00000355480	ENST00000324460		TCGA	RV	HNSC	TCGA-CV-7418-01A	COL18A1	chr21	46932177	+	HSPA5	chr9	128003622	-
5CDS-intron	ENST00000359759	ENST00000324460		TCGA	RV	HNSC	TCGA-CV-7418-01A	COL18A1	chr21	46932177	+	HSPA5	chr9	128003622	-
intron-intron	ENST00000459895	ENST00000324460		TCGA	RV	HNSC	TCGA-CV-7418-01A	COL18A1	chr21	46932177	+	HSPA5	chr9	128003622	-
5UTR-intron	ENST00000244728	ENST00000521002		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000244728	ENST00000433756		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000244728	ENST00000262103		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000244728	ENST00000523092		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370819	ENST00000521002		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370819	ENST00000433756		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370819	ENST00000262103		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370819	ENST00000523092		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000535941	ENST00000521002		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000535941	ENST00000433756		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000535941	ENST00000262103		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5UTR-intron	ENST00000535941	ENST00000523092		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370808	ENST00000521002		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370808	ENST00000433756		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370808	ENST00000262103		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000370808	ENST00000523092		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000467045	ENST00000521002		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000467045	ENST00000433756		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000467045	ENST00000262103		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
intron-intron	ENST00000467045	ENST00000523092		TCGA	RV	HNSC	TCGA-CR-7383-01A	COL21A1	chr6	56112185	-	EFCAB1	chr8	49643203	-
5CDS-5UTR	ENST00000375820	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000375820	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000375820	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000543140	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000543140	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
intron-intron	ENST00000543140	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000467182	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000467182	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
intron-intron	ENST00000467182	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL4A1	chr13	110801318	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000300527	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000300527	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000300527	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000310645	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000310645	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-intron	ENST00000310645	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000357838	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000357838	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-intron	ENST00000357838	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000409416	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000409416	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-intron	ENST00000409416	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000397763	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000397763	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-intron	ENST00000397763	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000460886	ENST00000228741		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000460886	ENST00000552142		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
intron-intron	ENST00000460886	ENST00000549529		TCGA	RV	HNSC	TCGA-CR-7382-01A	COL6A2	chr21	47552763	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000398519	ENST00000269389		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000398519	ENST00000580437		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000314028	ENST00000269389		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000314028	ENST00000580437		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000392334	ENST00000269389		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
5CDS-5UTR	ENST00000392334	ENST00000580437		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000578904	ENST00000269389		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000578904	ENST00000580437		TCGA	RV	HNSC	TCGA-CV-5440-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80285168	-
In-frame	ENST00000257215	ENST00000308287		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DAGLA	chr11	61502474	+	MS4A10	chr11	60561445	+
5CDS-intron	ENST00000371269	ENST00000260356		TCGA	RV	HNSC	TCGA-CN-4742-01A	DHCR24	chr1	55315306	-	THBS1	chr15	39873127	+
intron-intron	ENST00000537443	ENST00000260356		TCGA	RV	HNSC	TCGA-CN-4742-01A	DHCR24	chr1	55315306	-	THBS1	chr15	39873127	+
intron-intron	ENST00000535035	ENST00000260356		TCGA	RV	HNSC	TCGA-CN-4742-01A	DHCR24	chr1	55315306	-	THBS1	chr15	39873127	+
Frame-shit	ENST00000280886	ENST00000392793		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
Frame-shit	ENST00000280886	ENST00000264037		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
5CDS-intron	ENST00000280886	ENST00000478058		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
5UTR-3CDS	ENST00000381496	ENST00000392793		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
5UTR-3CDS	ENST00000381496	ENST00000264037		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
5UTR-intron	ENST00000381496	ENST00000478058		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
intron-3CDS	ENST00000540204	ENST00000392793		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
intron-3CDS	ENST00000540204	ENST00000264037		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
intron-intron	ENST00000540204	ENST00000478058		TCGA	RV	HNSC	TCGA-CV-7177-01A	DIP2C	chr10	518379	-	TECTA	chr11	120996011	+
Frame-shit	ENST00000357674	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000357674	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000357674	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000357674	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000357674	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000357674	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000357674	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000314062	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000314062	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000314062	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000314062	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000314062	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000314062	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000314062	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000346964	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000346964	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000346964	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000346964	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000346964	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000346964	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000346964	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000419354	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000419354	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000419354	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000419354	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000419354	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000419354	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000419354	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000452595	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000452595	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000452595	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000452595	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-intron	ENST00000452595	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-intron	ENST00000452595	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-intron	ENST00000452595	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000422288	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000422288	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000422288	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000422288	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000422288	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000422288	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000422288	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000448528	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000448528	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000448528	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000448528	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000448528	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000448528	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000448528	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000443183	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000443183	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000443183	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-3CDS	ENST00000443183	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-intron	ENST00000443183	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-intron	ENST00000443183	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
intron-intron	ENST00000443183	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000450955	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000450955	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000450955	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000450955	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000450955	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000450955	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000450955	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000392382	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000392382	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000392382	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
Frame-shit	ENST00000392382	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000392382	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000392382	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5CDS-intron	ENST00000392382	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-3CDS	ENST00000485409	ENST00000392432		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-3CDS	ENST00000485409	ENST00000273580		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-3CDS	ENST00000485409	ENST00000381975		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-3CDS	ENST00000485409	ENST00000347147		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-intron	ENST00000485409	ENST00000476750		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-intron	ENST00000485409	ENST00000473092		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
5UTR-intron	ENST00000485409	ENST00000330115		TCGA	RV	HNSC	TCGA-BA-A6DB-01A	DLG1	chr3	197009550	-	TMEM44	chr3	194344424	-
In-frame	ENST00000264211	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
In-frame	ENST00000264211	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000400422	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000400422	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000602326	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000602326	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
intron-3CDS	ENST00000374935	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
intron-3CDS	ENST00000374935	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
In-frame	ENST00000374937	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
In-frame	ENST00000374937	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000536266	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000536266	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
intron-3CDS	ENST00000374933	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
intron-3CDS	ENST00000374933	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
5UTR-3CDS	ENST00000544689	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
5UTR-3CDS	ENST00000544689	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
In-frame	ENST00000356916	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
In-frame	ENST00000356916	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000374927	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000374927	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
intron-3CDS	ENST00000537738	ENST00000326279		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
intron-3CDS	ENST00000537738	ENST00000254231		TCGA	RV	HNSC	TCGA-DQ-7591-01A	EIF4G3	chr1	21267984	-	LIN28A	chr1	26737877	+
Frame-shit	ENST00000371730	ENST00000371714		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000371710		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000337809		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000435686		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000447887		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000453295		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000428468		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000530544		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000531828		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371730	ENST00000361556		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
5CDS-intron	ENST00000371730	ENST00000473207		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
5CDS-intron	ENST00000371730	ENST00000462759		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
5CDS-intron	ENST00000371730	ENST00000486942		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000371714		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000371710		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000337809		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000435686		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000447887		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000453295		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000428468		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000530544		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000531828		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
Frame-shit	ENST00000371733	ENST00000361556		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
5CDS-intron	ENST00000371733	ENST00000473207		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
5CDS-intron	ENST00000371733	ENST00000462759		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
5CDS-intron	ENST00000371733	ENST00000486942		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000371714		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000371710		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000337809		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000435686		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000447887		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000453295		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000428468		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000530544		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000531828		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000396122	ENST00000361556		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-intron	ENST00000396122	ENST00000473207		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-intron	ENST00000396122	ENST00000462759		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-intron	ENST00000396122	ENST00000486942		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000371714		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000371710		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000337809		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000435686		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000447887		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000453295		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000428468		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000530544		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000531828		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000493793	ENST00000361556		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-intron	ENST00000493793	ENST00000473207		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-intron	ENST00000493793	ENST00000462759		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-intron	ENST00000493793	ENST00000486942		TCGA	RV	HNSC	TCGA-CV-5971-01A	EPS15	chr1	51946945	-	OSBPL9	chr1	52246836	+
intron-3CDS	ENST00000371547	ENST00000496972		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000405222		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000407661		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000406818		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000407038		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000404103		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000407186		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000288642		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371547	ENST00000545439		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-intron	ENST00000371547	ENST00000472690		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000496972		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000405222		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000407661		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000406818		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000407038		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000404103		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000407186		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000288642		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000371552	ENST00000545439		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-intron	ENST00000371552	ENST00000472690		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000496972		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000405222		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000407661		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000406818		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000407038		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000404103		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000407186		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000288642		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000371543	ENST00000545439		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
5CDS-intron	ENST00000371543	ENST00000472690		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000496972		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000405222		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000407661		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000406818		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000407038		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000404103		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000407186		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000288642		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000443748	ENST00000545439		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
5CDS-intron	ENST00000443748	ENST00000472690		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000496972		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000405222		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000407661		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000406818		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000407038		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000404103		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000407186		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000288642		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
Frame-shit	ENST00000260762	ENST00000545439		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
5CDS-intron	ENST00000260762	ENST00000472690		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000496972		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000405222		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000407661		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000406818		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000407038		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000404103		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000407186		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000288642		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-3CDS	ENST00000497262	ENST00000545439		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
intron-intron	ENST00000497262	ENST00000472690		TCGA	RV	HNSC	TCGA-BB-7861-01A	EXOC6	chr10	94608391	+	DTNB	chr2	25611230	-
5CDS-intron	ENST00000289081	ENST00000277198		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000289081	ENST00000297979		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000289081	ENST00000375315		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000289081	ENST00000395357		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000289081	ENST00000425634		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000289081	ENST00000433691		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000289081	ENST00000473778		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000277198		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000297979		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000375315		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000395357		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000425634		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000433691		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000375305	ENST00000473778		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000277198		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000297979		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000375315		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000395357		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000425634		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000433691		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000464653	ENST00000473778		TCGA	RV	HNSC	TCGA-BA-6873-01A	FANCC	chr9	98002931	-	C9orf3	chr9	97822976	+
5CDS-5UTR	ENST00000324331	ENST00000379350		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-5UTR	ENST00000324331	ENST00000379348		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000324331	ENST00000332995		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000324331	ENST00000482982		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000324331	ENST00000379345		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000324331	ENST00000457702		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000324331	ENST00000379335		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000324331	ENST00000379329		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-5UTR	ENST00000274680	ENST00000379350		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-5UTR	ENST00000274680	ENST00000379348		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000274680	ENST00000332995		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000274680	ENST00000482982		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000274680	ENST00000379345		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000274680	ENST00000457702		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000274680	ENST00000379335		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
5CDS-intron	ENST00000274680	ENST00000379329		TCGA	RV	HNSC	TCGA-CV-6935-01A	FARS2	chr6	5613553	+	PHACTR1	chr6	12718931	+
Frame-shit	ENST00000434748	ENST00000330579		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000434748	ENST00000535343		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000434748	ENST00000538784		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000261673	ENST00000330579		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000261673	ENST00000535343		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000261673	ENST00000538784		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000542061	ENST00000330579		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000542061	ENST00000535343		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000542061	ENST00000538784		TCGA	RV	HNSC	TCGA-MT-A67A-01A	FBRSL1	chr12	133067447	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000257209	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
5CDS-intron	ENST00000257209	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
Frame-shit	ENST00000445677	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
5CDS-intron	ENST00000445677	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
Frame-shit	ENST00000590592	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
5CDS-intron	ENST00000590592	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
Frame-shit	ENST00000359247	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
5CDS-intron	ENST00000359247	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
intron-3CDS	ENST00000591635	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
intron-intron	ENST00000591635	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
intron-3CDS	ENST00000592128	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
intron-intron	ENST00000592128	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
intron-3CDS	ENST00000587493	ENST00000261326		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
intron-intron	ENST00000587493	ENST00000588132		TCGA	RV	HNSC	TCGA-DQ-5630-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33828885	+
5UTR-intron	ENST00000318789	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318789	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-intron	ENST00000475937	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000475937	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-intron	ENST00000493089	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000493089	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000484350	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000484350	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-intron	ENST00000318779	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
5UTR-5UTR	ENST00000318779	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000491238	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000491238	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000498215	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000498215	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000468577	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000468577	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000472382	ENST00000425534		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000389826		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000448225		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000295612		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000468147		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000472382	ENST00000421769		TCGA	RV	HNSC	TCGA-CV-A45X-01A	FOXP1	chr3	71542577	-	EIF4E3	chr3	71777774	-
Frame-shit	ENST00000471389	ENST00000355537		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000471389	ENST00000590564		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
5UTR-3CDS	ENST00000394647	ENST00000355537		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
5UTR-intron	ENST00000394647	ENST00000590564		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-3CDS	ENST00000431610	ENST00000355537		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-intron	ENST00000431610	ENST00000590564		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-3CDS	ENST00000460382	ENST00000355537		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-intron	ENST00000460382	ENST00000590564		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-3CDS	ENST00000463855	ENST00000355537		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-intron	ENST00000463855	ENST00000590564		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-3CDS	ENST00000472835	ENST00000355537		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
intron-intron	ENST00000472835	ENST00000590564		TCGA	RV	HNSC	TCGA-CN-5364-01A	FTO	chr16	53738141	+	ZNF536	chr19	31025754	+
Frame-shit	ENST00000357308	ENST00000410022		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000357308	ENST00000471185		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000357308	ENST00000303698		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000357308	ENST00000394305		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000357308	ENST00000462320		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
Frame-shit	ENST00000361060	ENST00000410022		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000361060	ENST00000471185		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000361060	ENST00000303698		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000361060	ENST00000394305		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-intron	ENST00000361060	ENST00000462320		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5UTR-3CDS	ENST00000494201	ENST00000410022		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5UTR-intron	ENST00000494201	ENST00000471185		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5UTR-intron	ENST00000494201	ENST00000303698		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5UTR-intron	ENST00000494201	ENST00000394305		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5UTR-intron	ENST00000494201	ENST00000462320		TCGA	RV	HNSC	TCGA-CR-7369-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69650849	-
5CDS-5UTR	ENST00000230882	ENST00000531499		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000230882	ENST00000535815		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000230882	ENST00000238699		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000230882	ENST00000529300		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000357703	ENST00000531499		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000357703	ENST00000535815		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000357703	ENST00000238699		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000357703	ENST00000529300		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5UTR-5UTR	ENST00000537449	ENST00000531499		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5UTR-5UTR	ENST00000537449	ENST00000535815		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5UTR-5UTR	ENST00000537449	ENST00000238699		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
5UTR-5UTR	ENST00000537449	ENST00000529300		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000513625	ENST00000531499		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000513625	ENST00000535815		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000513625	ENST00000238699		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000513625	ENST00000529300		TCGA	RV	HNSC	TCGA-HD-A6HZ-01A	GHR	chr5	42566046	+	GPR68	chr14	91701523	-
Frame-shit	ENST00000381971	ENST00000466387		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000381971	ENST00000496558		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000381971	ENST00000361291		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000381971	ENST00000402739		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000381971	ENST00000540488		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000381971	ENST00000541047		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000381971	ENST00000343114		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000381971	ENST00000496251		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000381971	ENST00000409266		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000324333	ENST00000466387		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000324333	ENST00000496558		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000324333	ENST00000361291		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000324333	ENST00000402739		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000324333	ENST00000540488		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
In-frame	ENST00000324333	ENST00000541047		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000324333	ENST00000343114		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000324333	ENST00000496251		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
5CDS-intron	ENST00000324333	ENST00000409266		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000466387		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000496558		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000361291		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000402739		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000540488		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000541047		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-3CDS	ENST00000461870	ENST00000343114		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-intron	ENST00000461870	ENST00000496251		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
intron-intron	ENST00000461870	ENST00000409266		TCGA	RV	HNSC	TCGA-CN-5365-01A	GLIS3	chr9	4117768	-	CTNNA2	chr2	80874710	+
Frame-shit	ENST00000251808	ENST00000360473		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	KCNRG	chr13	50594350	+
Frame-shit	ENST00000251808	ENST00000312942		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	KCNRG	chr13	50594350	+
5UTR-3CDS	ENST00000395927	ENST00000360473		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	KCNRG	chr13	50594350	+
5UTR-3CDS	ENST00000395927	ENST00000312942		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000517674	ENST00000360473		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000517674	ENST00000312942		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	KCNRG	chr13	50594350	+
Frame-shit	ENST00000392870	ENST00000334464		TCGA	RV	HNSC	TCGA-BA-4075-01A	GRK5	chr10	121156284	+	PDZD8	chr10	119078485	-
5CDS-intron	ENST00000392870	ENST00000482496		TCGA	RV	HNSC	TCGA-BA-4075-01A	GRK5	chr10	121156284	+	PDZD8	chr10	119078485	-
Frame-shit	ENST00000369108	ENST00000334464		TCGA	RV	HNSC	TCGA-BA-4075-01A	GRK5	chr10	121156284	+	PDZD8	chr10	119078485	-
5CDS-intron	ENST00000369108	ENST00000482496		TCGA	RV	HNSC	TCGA-BA-4075-01A	GRK5	chr10	121156284	+	PDZD8	chr10	119078485	-
intron-3CDS	ENST00000473264	ENST00000334464		TCGA	RV	HNSC	TCGA-BA-4075-01A	GRK5	chr10	121156284	+	PDZD8	chr10	119078485	-
intron-intron	ENST00000473264	ENST00000482496		TCGA	RV	HNSC	TCGA-BA-4075-01A	GRK5	chr10	121156284	+	PDZD8	chr10	119078485	-
5UTR-3CDS	ENST00000265755	ENST00000417009		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000265755	ENST00000444799		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000265755	ENST00000413065		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000265755	ENST00000248566		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000265755	ENST00000493858		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-3CDS	ENST00000455841	ENST00000417009		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000455841	ENST00000444799		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000455841	ENST00000413065		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000455841	ENST00000248566		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000455841	ENST00000493858		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-3CDS	ENST00000424337	ENST00000417009		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000424337	ENST00000444799		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000424337	ENST00000413065		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000424337	ENST00000248566		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
5UTR-intron	ENST00000424337	ENST00000493858		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-3CDS	ENST00000476977	ENST00000417009		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000476977	ENST00000444799		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000476977	ENST00000413065		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000476977	ENST00000248566		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000476977	ENST00000493858		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-3CDS	ENST00000489094	ENST00000417009		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000489094	ENST00000444799		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000489094	ENST00000413065		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000489094	ENST00000248566		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-intron	ENST00000489094	ENST00000493858		TCGA	RV	HNSC	TCGA-MT-A51X-01A	GTF2IRD1	chr7	73868506	+	SHFM1	chr7	96251955	-
intron-3CDS	ENST00000380252	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	HBG2	chr11	5367003	-	TRIM22	chr11	5718478	+
5UTR-3CDS	ENST00000380259	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	HBG2	chr11	5367003	-	TRIM22	chr11	5718478	+
intron-3CDS	ENST00000336906	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	HBG2	chr11	5367003	-	TRIM22	chr11	5718478	+
Frame-shit	ENST00000372583	ENST00000331302		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000372583	ENST00000323434		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000372583	ENST00000536489		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5CDS-intron	ENST00000372583	ENST00000576001		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000372584	ENST00000331302		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000372584	ENST00000323434		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000372584	ENST00000536489		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5CDS-intron	ENST00000372584	ENST00000576001		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000247584	ENST00000331302		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000247584	ENST00000323434		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000247584	ENST00000536489		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5CDS-intron	ENST00000247584	ENST00000576001		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000429157	ENST00000331302		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000429157	ENST00000323434		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000429157	ENST00000536489		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5CDS-intron	ENST00000429157	ENST00000576001		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5UTR-3CDS	ENST00000460604	ENST00000331302		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5UTR-3CDS	ENST00000460604	ENST00000323434		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5UTR-3CDS	ENST00000460604	ENST00000536489		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
5UTR-intron	ENST00000460604	ENST00000576001		TCGA	RV	HNSC	TCGA-BB-A5HU-01A	HIVEP3	chr1	41984073	-	RPH3AL	chr17	171206	-
Frame-shit	ENST00000383329	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000383329	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000383329	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000383329	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000383329	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000383329	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000383329	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000383329	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000383329	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000376228	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000376228	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000376228	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000376228	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000376228	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000376228	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000376228	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000376228	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000376228	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000423509	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000423509	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000423509	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000423509	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000423509	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000423509	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000423509	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000423509	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000423509	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000430940	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000430940	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000430940	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000430940	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000430940	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000430940	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000430940	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000430940	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000430940	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422726	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422726	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422726	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422726	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422726	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422726	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422726	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422726	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422726	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000424832	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000424832	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000424832	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000424832	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000424832	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000424832	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000424832	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000424832	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000424832	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458192	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458192	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458192	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458192	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458192	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458192	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458192	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458192	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458192	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422921	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422921	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422921	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422921	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000422921	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422921	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422921	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422921	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000422921	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000456487	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000456487	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000456487	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000456487	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000456487	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000456487	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000456487	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000456487	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000456487	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000420206	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000420206	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000420206	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000420206	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000420206	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000420206	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000420206	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000420206	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000420206	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495725	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495725	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495725	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495725	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495725	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495725	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495725	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495725	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495725	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419135	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419135	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419135	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419135	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419135	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419135	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419135	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419135	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419135	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000433153	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000433153	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000433153	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000433153	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000433153	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000433153	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000433153	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000433153	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000433153	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000429840	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000429840	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000429840	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000429840	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000429840	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000429840	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000429840	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000429840	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000429840	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000457903	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000457903	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000457903	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000457903	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000457903	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000457903	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000457903	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000457903	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000457903	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000479546	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000479546	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000479546	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000479546	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000479546	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000479546	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000479546	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000479546	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000479546	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400395	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400395	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400395	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400395	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400395	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400395	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400395	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400395	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400395	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383323	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383323	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383323	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383323	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383323	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383323	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383323	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383323	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383323	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000434884	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000434884	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000434884	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000434884	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000434884	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000434884	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000434884	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000434884	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000434884	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400394	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400394	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400394	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400394	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400394	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400394	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400394	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400394	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400394	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000494871	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000494871	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000494871	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000494871	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000494871	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000494871	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000494871	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000494871	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000494871	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453809	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453809	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453809	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453809	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453809	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000453809	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000453809	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000453809	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000453809	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000414249	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000414249	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000414249	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000414249	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000414249	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000414249	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000414249	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000414249	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000414249	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419590	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419590	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419590	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419590	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000419590	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419590	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419590	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419590	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000419590	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000438171	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000438171	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000438171	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000438171	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000438171	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000438171	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000438171	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000438171	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000438171	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000552865	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000552865	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000552865	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000552865	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000552865	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000552865	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000552865	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000552865	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000552865	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495898	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495898	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495898	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495898	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000495898	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495898	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495898	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495898	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000495898	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383483	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383483	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383483	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383483	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383483	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383483	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383483	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383483	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383483	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383487	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383487	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383487	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383487	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000383487	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383487	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383487	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383487	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000383487	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458668	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458668	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458668	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458668	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000458668	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458668	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458668	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458668	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000458668	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400341	ENST00000451292		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400341	ENST00000377797		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400341	ENST00000445265		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400341	ENST00000323668		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000400341	ENST00000439160		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400341	ENST00000394269		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400341	ENST00000504761		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400341	ENST00000513346		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
intron-intron	ENST00000400341	ENST00000506063		TCGA	RV	HNSC	TCGA-CV-6961-01A	HLA-C	chr6	31236528	-	TCOF1	chr5	149777917	+
Frame-shit	ENST00000248553	ENST00000342992		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000248553	ENST00000460472		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000248553	ENST00000589042		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000248553	ENST00000342175		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000248553	ENST00000359218		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000248553	ENST00000591111		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000248553	ENST00000360870		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
Frame-shit	ENST00000429938	ENST00000342992		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000429938	ENST00000460472		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000429938	ENST00000589042		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000429938	ENST00000342175		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000429938	ENST00000359218		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000429938	ENST00000591111		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5CDS-intron	ENST00000429938	ENST00000360870		TCGA	RV	HNSC	TCGA-HD-8224-01A	HSPB1	chr7	75933609	+	TTN	chr2	179537430	-
5UTR-3UTR	ENST00000342160	ENST00000506793		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
5UTR-3UTR	ENST00000342160	ENST00000281543		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
5UTR-3UTR	ENST00000262854	ENST00000506793		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
5UTR-3UTR	ENST00000262854	ENST00000281543		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
intron-3UTR	ENST00000474288	ENST00000506793		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
intron-3UTR	ENST00000474288	ENST00000281543		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
5UTR-3UTR	ENST00000218328	ENST00000506793		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
5UTR-3UTR	ENST00000218328	ENST00000281543		TCGA	RV	HNSC	TCGA-CN-6024-01A	HUWE1	chrX	53707002	-	GUF1	chr4	44682711	+
5UTR-3CDS	ENST00000409599	ENST00000370608		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
5UTR-3CDS	ENST00000409599	ENST00000284027		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
5UTR-5UTR	ENST00000409599	ENST00000531325		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
intron-3CDS	ENST00000233957	ENST00000370608		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
intron-3CDS	ENST00000233957	ENST00000284027		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
intron-5UTR	ENST00000233957	ENST00000531325		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
intron-3CDS	ENST00000334376	ENST00000370608		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
intron-3CDS	ENST00000334376	ENST00000284027		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
intron-5UTR	ENST00000334376	ENST00000531325		TCGA	RV	HNSC	TCGA-CV-7406-01A	IL18R1	chr2	102972860	+	MCOLN2	chr1	85406674	-
Frame-shit	ENST00000394735	ENST00000394767		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
5CDS-5UTR	ENST00000394735	ENST00000466963		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
5CDS-5UTR	ENST00000394735	ENST00000426831		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
In-frame	ENST00000340139	ENST00000394767		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
5CDS-5UTR	ENST00000340139	ENST00000466963		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
5CDS-5UTR	ENST00000340139	ENST00000426831		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
In-frame	ENST00000451321	ENST00000394767		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
5CDS-5UTR	ENST00000451321	ENST00000466963		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
5CDS-5UTR	ENST00000451321	ENST00000426831		TCGA	RV	HNSC	TCGA-CN-5364-01A	INTS12	chr4	106613133	-	CXXC4	chr4	105393523	-
In-frame	ENST00000274364	ENST00000355044		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
In-frame	ENST00000274364	ENST00000423111		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
In-frame	ENST00000274364	ENST00000303745		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5CDS-intron	ENST00000274364	ENST00000529665		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5CDS-intron	ENST00000274364	ENST00000527407		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000379730	ENST00000355044		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000379730	ENST00000423111		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5UTR-3CDS	ENST00000379730	ENST00000303745		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000379730	ENST00000529665		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
5UTR-intron	ENST00000379730	ENST00000527407		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000396234	ENST00000355044		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000396234	ENST00000423111		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000396234	ENST00000303745		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-intron	ENST00000396234	ENST00000529665		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-intron	ENST00000396234	ENST00000527407		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000502745	ENST00000355044		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000502745	ENST00000423111		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000502745	ENST00000303745		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-intron	ENST00000502745	ENST00000529665		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-intron	ENST00000502745	ENST00000527407		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000508410	ENST00000355044		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000508410	ENST00000423111		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-3CDS	ENST00000508410	ENST00000303745		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-intron	ENST00000508410	ENST00000529665		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-intron	ENST00000508410	ENST00000527407		TCGA	RV	HNSC	TCGA-CV-7243-01A	IQGAP2	chr5	75866482	+	ATRNL1	chr10	117278773	+
intron-5UTR	ENST00000409532	ENST00000434735		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000409532	ENST00000342494		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-intron	ENST00000409532	ENST00000535089		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000409532	ENST00000280774		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000409532	ENST00000536398		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000409532	ENST00000340074		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000409532	ENST00000540230		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000409532	ENST00000537063		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-intron	ENST00000409532	ENST00000535900		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000434735		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000342494		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-intron	ENST00000264107	ENST00000535089		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000280774		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000536398		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000340074		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000540230		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-5UTR	ENST00000264107	ENST00000537063		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
intron-intron	ENST00000264107	ENST00000535900		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000434735		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000342494		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-intron	ENST00000343713	ENST00000535089		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000280774		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000536398		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000340074		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000540230		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000343713	ENST00000537063		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-intron	ENST00000343713	ENST00000535900		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000434735		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000342494		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-intron	ENST00000264106	ENST00000535089		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000280774		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000536398		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000340074		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000540230		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000264106	ENST00000537063		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-intron	ENST00000264106	ENST00000535900		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000434735		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000342494		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-intron	ENST00000375221	ENST00000535089		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000280774		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000536398		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000340074		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000540230		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-5UTR	ENST00000375221	ENST00000537063		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
3UTR-intron	ENST00000375221	ENST00000535900		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000434735		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000342494		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-intron	ENST00000409080	ENST00000535089		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000280774		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000536398		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000340074		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000540230		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-5UTR	ENST00000409080	ENST00000537063		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
5CDS-intron	ENST00000409080	ENST00000535900		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	ITGA6	chr2	173371002	+	UBE3B	chr12	109919442	+
In-frame	ENST00000539801	ENST00000321612		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
5CDS-intron	ENST00000539801	ENST00000460457		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
In-frame	ENST00000381652	ENST00000321612		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
5CDS-intron	ENST00000381652	ENST00000460457		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
intron-3CDS	ENST00000544510	ENST00000321612		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
intron-intron	ENST00000544510	ENST00000460457		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
intron-3CDS	ENST00000487310	ENST00000321612		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
intron-intron	ENST00000487310	ENST00000460457		TCGA	RV	HNSC	TCGA-HD-7229-01A	JAK2	chr9	5029906	+	GLDC	chr9	6565429	-
In-frame	ENST00000251879	ENST00000380672		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000251879	ENST00000380667		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000251879	ENST00000545497		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000251879	ENST00000380666		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000251879	ENST00000471301		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000414202	ENST00000380672		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000414202	ENST00000380667		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000414202	ENST00000545497		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000414202	ENST00000380666		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000414202	ENST00000471301		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000381532	ENST00000380672		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000381532	ENST00000380667		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000381532	ENST00000545497		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000381532	ENST00000380666		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000381532	ENST00000471301		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000418622	ENST00000380672		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000418622	ENST00000380667		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000418622	ENST00000545497		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000418622	ENST00000380666		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000418622	ENST00000471301		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000449720	ENST00000380672		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000449720	ENST00000380667		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000449720	ENST00000545497		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000449720	ENST00000380666		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
In-frame	ENST00000449720	ENST00000471301		TCGA	RV	HNSC	TCGA-CV-7415-01A	KIAA1432	chr9	5656690	+	BNC2	chr9	16583083	-
Frame-shit	ENST00000401507	ENST00000274487		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
5CDS-intron	ENST00000401507	ENST00000509467		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
3UTR-3CDS	ENST00000509663	ENST00000274487		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
3UTR-intron	ENST00000509663	ENST00000509467		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
5UTR-3CDS	ENST00000381103	ENST00000274487		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
5UTR-intron	ENST00000381103	ENST00000509467		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
Frame-shit	ENST00000407818	ENST00000274487		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
5CDS-intron	ENST00000407818	ENST00000509467		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
intron-3CDS	ENST00000506857	ENST00000274487		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
intron-intron	ENST00000506857	ENST00000509467		TCGA	RV	HNSC	TCGA-CR-7380-01A	KIF2A	chr5	61602363	+	ADAMTS19	chr5	128956311	+
In-frame	ENST00000167586	ENST00000339022		TCGA	RV	HNSC	TCGA-CQ-6229-01A	KRT14	chr17	39738531	-	CYP2C18	chr10	96447527	+
In-frame	ENST00000167586	ENST00000285979		TCGA	RV	HNSC	TCGA-CQ-6229-01A	KRT14	chr17	39738531	-	CYP2C18	chr10	96447527	+
intron-5UTR	ENST00000252242	ENST00000303562		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
intron-5UTR	ENST00000252242	ENST00000554617		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
intron-5UTR	ENST00000252242	ENST00000556324		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
intron-5UTR	ENST00000252242	ENST00000535987		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
intron-intron	ENST00000252242	ENST00000555242		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
intron-intron	ENST00000252242	ENST00000555686		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
intron-intron	ENST00000252242	ENST00000555347		TCGA	RV	HNSC	TCGA-CV-7410-01A	KRT5	chr12	52910965	-	FOS	chr14	75745529	+
5CDS-5UTR	ENST00000252242	ENST00000395388		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-5UTR	ENST00000252242	ENST00000374982		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000383127		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000459705		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000434866		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000416883		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000481943		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000411505		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000414698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000546379		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000493431		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000418111		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000383259		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000551750		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000461633		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000383258		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000442960		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000549531		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000482781		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000415767		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000411524		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000553193		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000498597		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-intron	ENST00000252242	ENST00000427753		TCGA	RV	HNSC	TCGA-DQ-7590-01A	KRT5	chr12	52908359	-	HLA-DRA	chr6	32407655	+
5CDS-5UTR	ENST00000308330	ENST00000393330		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000308330	ENST00000247829		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000308330	ENST00000546561		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000308330	ENST00000552128		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000308330	ENST00000552786		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000541171	ENST00000393330		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000541171	ENST00000247829		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000541171	ENST00000546561		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000541171	ENST00000552128		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000541171	ENST00000552786		TCGA	RV	HNSC	TCGA-UF-A7JH-01A	LEMD3	chr12	65564898	+	TSPAN8	chr12	71676599	-
Frame-shit	ENST00000215832	ENST00000277541		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
5CDS-intron	ENST00000215832	ENST00000491649		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
Frame-shit	ENST00000398822	ENST00000277541		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
5CDS-intron	ENST00000398822	ENST00000491649		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
Frame-shit	ENST00000544786	ENST00000277541		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
5CDS-intron	ENST00000544786	ENST00000491649		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
intron-3CDS	ENST00000491588	ENST00000277541		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
intron-intron	ENST00000491588	ENST00000491649		TCGA	RV	HNSC	TCGA-CN-A498-01A	MAPK1	chr22	22153301	-	NOTCH1	chr9	139414017	-
5CDS-5UTR	ENST00000339514	ENST00000355537		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-intron	ENST00000339514	ENST00000590564		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-5UTR	ENST00000392318	ENST00000355537		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-intron	ENST00000392318	ENST00000590564		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-5UTR	ENST00000304164	ENST00000355537		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-intron	ENST00000304164	ENST00000590564		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-5UTR	ENST00000392316	ENST00000355537		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
5CDS-intron	ENST00000392316	ENST00000590564		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
intron-5UTR	ENST00000439065	ENST00000355537		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
intron-intron	ENST00000439065	ENST00000590564		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
intron-5UTR	ENST00000496992	ENST00000355537		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
intron-intron	ENST00000496992	ENST00000590564		TCGA	RV	HNSC	TCGA-CQ-6225-01A	MYO1B	chr2	192214951	+	ZNF536	chr19	30934468	+
In-frame	ENST00000454872	ENST00000460779		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
In-frame	ENST00000454872	ENST00000467632		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
In-frame	ENST00000454872	ENST00000295881		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
In-frame	ENST00000454872	ENST00000383673		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
intron-3CDS	ENST00000473253	ENST00000460779		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
intron-3CDS	ENST00000473253	ENST00000467632		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
intron-3CDS	ENST00000473253	ENST00000295881		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
intron-3CDS	ENST00000473253	ENST00000383673		TCGA	RV	HNSC	TCGA-BB-4223-01A	NAALADL2	chr3	175455187	+	DRD3	chr3	113858543	-
In-frame	ENST00000328965	ENST00000361193		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000328965	ENST00000411502		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000328965	ENST00000546047		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000328965	ENST00000571602		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000328965	ENST00000572725		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000531220	ENST00000361193		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000531220	ENST00000411502		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
In-frame	ENST00000531220	ENST00000546047		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000531220	ENST00000571602		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
5CDS-intron	ENST00000531220	ENST00000572725		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000534735	ENST00000361193		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000534735	ENST00000411502		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
intron-3CDS	ENST00000534735	ENST00000546047		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
intron-intron	ENST00000534735	ENST00000571602		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
intron-intron	ENST00000534735	ENST00000572725		TCGA	RV	HNSC	TCGA-CV-5443-01A	OAF	chr11	120097705	+	SLC26A11	chr17	78215570	+
Frame-shit	ENST00000359568	ENST00000296484		TCGA	RV	HNSC	TCGA-CV-6961-01A	PCNT	chr21	47811291	+	POC1A	chr3	52110001	-
Frame-shit	ENST00000359568	ENST00000394970		TCGA	RV	HNSC	TCGA-CV-6961-01A	PCNT	chr21	47811291	+	POC1A	chr3	52110001	-
In-frame	ENST00000359568	ENST00000474012		TCGA	RV	HNSC	TCGA-CV-6961-01A	PCNT	chr21	47811291	+	POC1A	chr3	52110001	-
3UTR-3CDS	ENST00000480896	ENST00000296484		TCGA	RV	HNSC	TCGA-CV-6961-01A	PCNT	chr21	47811291	+	POC1A	chr3	52110001	-
3UTR-3CDS	ENST00000480896	ENST00000394970		TCGA	RV	HNSC	TCGA-CV-6961-01A	PCNT	chr21	47811291	+	POC1A	chr3	52110001	-
3UTR-3CDS	ENST00000480896	ENST00000474012		TCGA	RV	HNSC	TCGA-CV-6961-01A	PCNT	chr21	47811291	+	POC1A	chr3	52110001	-
In-frame	ENST00000495893	ENST00000275364		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000495893	ENST00000544127		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000495893	ENST00000491117		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000495893	ENST00000407904		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000495893	ENST00000407653		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000495893	ENST00000396960		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000494943	ENST00000275364		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000494943	ENST00000544127		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000494943	ENST00000491117		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000494943	ENST00000407904		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000494943	ENST00000407653		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000494943	ENST00000396960		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000467570	ENST00000275364		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000467570	ENST00000544127		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000467570	ENST00000491117		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000467570	ENST00000407904		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000467570	ENST00000407653		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000467570	ENST00000396960		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000474275	ENST00000275364		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000474275	ENST00000544127		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000474275	ENST00000491117		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000474275	ENST00000407904		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000474275	ENST00000407653		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000474275	ENST00000396960		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000497658	ENST00000275364		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000497658	ENST00000544127		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000497658	ENST00000491117		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000497658	ENST00000407904		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000497658	ENST00000407653		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000497658	ENST00000396960		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000481639	ENST00000275364		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
In-frame	ENST00000481639	ENST00000544127		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000481639	ENST00000491117		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000481639	ENST00000407904		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000481639	ENST00000407653		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-intron	ENST00000481639	ENST00000396960		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	PHC3	chr3	169896561	-	GNA12	chr7	2834777	-
5CDS-5UTR	ENST00000360453	ENST00000333677		TCGA	RV	HNSC	TCGA-CN-A63U-01A	PPARGC1B	chr5	149109983	+	ARHGEF37	chr5	148977322	+
5CDS-5UTR	ENST00000394320	ENST00000333677		TCGA	RV	HNSC	TCGA-CN-A63U-01A	PPARGC1B	chr5	149109983	+	ARHGEF37	chr5	148977322	+
3UTR-5UTR	ENST00000461780	ENST00000333677		TCGA	RV	HNSC	TCGA-CN-A63U-01A	PPARGC1B	chr5	149109983	+	ARHGEF37	chr5	148977322	+
5CDS-5UTR	ENST00000309241	ENST00000333677		TCGA	RV	HNSC	TCGA-CN-A63U-01A	PPARGC1B	chr5	149109983	+	ARHGEF37	chr5	148977322	+
intron-5UTR	ENST00000403750	ENST00000333677		TCGA	RV	HNSC	TCGA-CN-A63U-01A	PPARGC1B	chr5	149109983	+	ARHGEF37	chr5	148977322	+
In-frame	ENST00000412327	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000412327	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000412327	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000335025	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000335025	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000335025	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000492445	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000492445	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000492445	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000398831	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000398831	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000398831	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000406385	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000406385	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000406385	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000456792	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000456792	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
In-frame	ENST00000456792	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
intron-3CDS	ENST00000446951	ENST00000406486		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
intron-3CDS	ENST00000446951	ENST00000358431		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
intron-3CDS	ENST00000446951	ENST00000401395		TCGA	RV	HNSC	TCGA-CV-7424-01A	PPIL2	chr22	22037546	+	KIAA1671	chr22	25577666	+
5CDS-5UTR	ENST00000353383	ENST00000528697		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
5CDS-5UTR	ENST00000353383	ENST00000530763		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
5CDS-5UTR	ENST00000353383	ENST00000534577		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
5CDS-intron	ENST00000353383	ENST00000278198		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
5CDS-intron	ENST00000353383	ENST00000527150		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-5UTR	ENST00000489697	ENST00000528697		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-5UTR	ENST00000489697	ENST00000530763		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-5UTR	ENST00000489697	ENST00000534577		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-intron	ENST00000489697	ENST00000278198		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-intron	ENST00000489697	ENST00000527150		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-5UTR	ENST00000261641	ENST00000528697		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-5UTR	ENST00000261641	ENST00000530763		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-5UTR	ENST00000261641	ENST00000534577		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-intron	ENST00000261641	ENST00000278198		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
intron-intron	ENST00000261641	ENST00000527150		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	RAI1	chr17	17707163	+	LRRC4C	chr11	40669828	-
In-frame	ENST00000262241	ENST00000359520		TCGA	RV	HNSC	TCGA-CN-A49A-01A	RCOR1	chr14	103167667	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000262241	ENST00000561228		TCGA	RV	HNSC	TCGA-CN-A49A-01A	RCOR1	chr14	103167667	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000262241	ENST00000558678		TCGA	RV	HNSC	TCGA-CN-A49A-01A	RCOR1	chr14	103167667	+	TECPR2	chr14	102963316	+
In-frame	ENST00000570597	ENST00000359520		TCGA	RV	HNSC	TCGA-CN-A49A-01A	RCOR1	chr14	103167667	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000570597	ENST00000561228		TCGA	RV	HNSC	TCGA-CN-A49A-01A	RCOR1	chr14	103167667	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000570597	ENST00000558678		TCGA	RV	HNSC	TCGA-CN-A49A-01A	RCOR1	chr14	103167667	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000430083	ENST00000226279		TCGA	RV	HNSC	TCGA-CN-4731-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
intron-3CDS	ENST00000328444	ENST00000226279		TCGA	RV	HNSC	TCGA-CN-4731-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
Frame-shit	ENST00000430083	ENST00000226279		TCGA	RV	HNSC	TCGA-CN-5369-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
intron-3CDS	ENST00000328444	ENST00000226279		TCGA	RV	HNSC	TCGA-CN-5369-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
Frame-shit	ENST00000521654	ENST00000368226		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000521654	ENST00000368227		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000521654	ENST00000532331		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000521654	ENST00000368213		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000521654	ENST00000368210		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000521654	ENST00000368215		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000521654	ENST00000368207		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000521654	ENST00000524481		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000521654	ENST00000525459		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000368226		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000368227		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000532331		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000368213		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000368210		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000368215		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
Frame-shit	ENST00000560949	ENST00000368207		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000560949	ENST00000524481		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000560949	ENST00000525459		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000368226		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000368227		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000532331		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000368213		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000368210		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000368215		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000454842	ENST00000368207		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000454842	ENST00000524481		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000454842	ENST00000525459		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000368226		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000368227		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000532331		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000368213		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000368210		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000368215		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000368414	ENST00000368207		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000368414	ENST00000524481		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000368414	ENST00000525459		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000368226		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000368227		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000532331		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000368213		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000368210		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000368215		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000359704	ENST00000368207		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000359704	ENST00000524481		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000359704	ENST00000525459		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000368226		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000368227		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000532331		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000368213		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000368210		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000368215		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000275184	ENST00000368207		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000275184	ENST00000524481		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000275184	ENST00000525459		TCGA	RV	HNSC	TCGA-CV-A45Z-01A	RNF217	chr6	125284572	+	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000549920	ENST00000225964		TCGA	RV	HNSC	TCGA-D6-A6EP-01A	RPL18	chr19	49118650	-	COL1A1	chr17	48278993	-
intron-3CDS	ENST00000550645	ENST00000225964		TCGA	RV	HNSC	TCGA-D6-A6EP-01A	RPL18	chr19	49118650	-	COL1A1	chr17	48278993	-
intron-3CDS	ENST00000552588	ENST00000225964		TCGA	RV	HNSC	TCGA-D6-A6EP-01A	RPL18	chr19	49118650	-	COL1A1	chr17	48278993	-
intron-3CDS	ENST00000549273	ENST00000225964		TCGA	RV	HNSC	TCGA-D6-A6EP-01A	RPL18	chr19	49118650	-	COL1A1	chr17	48278993	-
5CDS-5UTR	ENST00000256190	ENST00000376141		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	SBF2	chr11	9917490	-	PAGE4	chrX	49595002	+
5CDS-5UTR	ENST00000256190	ENST00000218068		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	SBF2	chr11	9917490	-	PAGE4	chrX	49595002	+
5CDS-3UTR	ENST00000256190	ENST00000478785		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	SBF2	chr11	9917490	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000527019	ENST00000376141		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	SBF2	chr11	9917490	-	PAGE4	chrX	49595002	+
intron-5UTR	ENST00000527019	ENST00000218068		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	SBF2	chr11	9917490	-	PAGE4	chrX	49595002	+
intron-3UTR	ENST00000527019	ENST00000478785		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	SBF2	chr11	9917490	-	PAGE4	chrX	49595002	+
5CDS-intron	ENST00000445299	ENST00000486944		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000445299	ENST00000497599		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000445299	ENST00000392685		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000445299	ENST00000314235		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000445299	ENST00000349697		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000445299	ENST00000485523		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000323460	ENST00000486944		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000323460	ENST00000497599		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000323460	ENST00000392685		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000323460	ENST00000314235		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000323460	ENST00000349697		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000323460	ENST00000485523		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000419026	ENST00000486944		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000419026	ENST00000497599		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000419026	ENST00000392685		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000419026	ENST00000314235		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000419026	ENST00000349697		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
5CDS-intron	ENST00000419026	ENST00000485523		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-intron	ENST00000489744	ENST00000486944		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-intron	ENST00000489744	ENST00000497599		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-intron	ENST00000489744	ENST00000392685		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-intron	ENST00000489744	ENST00000314235		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-intron	ENST00000489744	ENST00000349697		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-intron	ENST00000489744	ENST00000485523		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	SENP5	chr3	196657771	+	KCNMB3	chr3	178962481	-
intron-3CDS	ENST00000477049	ENST00000334270		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
intron-intron	ENST00000477049	ENST00000461970		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
In-frame	ENST00000224140	ENST00000334270		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
5CDS-intron	ENST00000224140	ENST00000461970		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
In-frame	ENST00000393220	ENST00000334270		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
5CDS-intron	ENST00000393220	ENST00000461970		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
In-frame	ENST00000372169	ENST00000334270		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
5CDS-intron	ENST00000372169	ENST00000461970		TCGA	RV	HNSC	TCGA-CV-7238-01A	SETX	chr9	135224639	-	TTF1	chr9	135262008	-
Frame-shit	ENST00000339276	ENST00000391976		TCGA	RV	HNSC	TCGA-CV-A6JM-01A	SFN	chr1	27190947	+	HDLBP	chr2	242194995	-
Frame-shit	ENST00000339276	ENST00000310931		TCGA	RV	HNSC	TCGA-CV-A6JM-01A	SFN	chr1	27190947	+	HDLBP	chr2	242194995	-
Frame-shit	ENST00000339276	ENST00000391975		TCGA	RV	HNSC	TCGA-CV-A6JM-01A	SFN	chr1	27190947	+	HDLBP	chr2	242194995	-
5CDS-intron	ENST00000339276	ENST00000427183		TCGA	RV	HNSC	TCGA-CV-A6JM-01A	SFN	chr1	27190947	+	HDLBP	chr2	242194995	-
5CDS-intron	ENST00000339276	ENST00000476807		TCGA	RV	HNSC	TCGA-CV-A6JM-01A	SFN	chr1	27190947	+	HDLBP	chr2	242194995	-
intron-intron	ENST00000521198	ENST00000360359		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521198	ENST00000535627		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521198	ENST00000470698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000522398	ENST00000360359		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000522398	ENST00000535627		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000522398	ENST00000470698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520976	ENST00000360359		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520976	ENST00000535627		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520976	ENST00000470698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000396596	ENST00000360359		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000396596	ENST00000535627		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000396596	ENST00000470698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000345714	ENST00000360359		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000345714	ENST00000535627		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000345714	ENST00000470698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521435	ENST00000360359		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521435	ENST00000535627		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521435	ENST00000470698		TCGA	RV	HNSC	TCGA-DQ-7590-01A	SGK3	chr8	67774257	+	ANKS1A	chr6	34977682	+
In-frame	ENST00000375300	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000375300	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000375300	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000375300	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000375300	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000375300	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000292055	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000292055	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000292055	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000292055	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000292055	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000292055	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5UTR-3CDS	ENST00000375288	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5UTR-3CDS	ENST00000375288	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5UTR-3CDS	ENST00000375288	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5UTR-3CDS	ENST00000375288	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5UTR-3CDS	ENST00000375288	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5UTR-3UTR	ENST00000375288	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000434315	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000434315	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000434315	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000434315	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000434315	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000434315	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000542607	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000542607	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000542607	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000542607	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000542607	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000542607	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000446921	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000446921	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000446921	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000446921	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
In-frame	ENST00000446921	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000446921	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000488337	ENST00000527185		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000488337	ENST00000528682		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000488337	ENST00000524871		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000488337	ENST00000418526		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000488337	ENST00000279463		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
intron-3UTR	ENST00000488337	ENST00000524560		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	SIK3	chr11	116797935	-	CNTN5	chr11	100126492	+
Frame-shit	ENST00000318445	ENST00000398015		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
5CDS-intron	ENST00000318445	ENST00000488154		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
5CDS-intron	ENST00000318445	ENST00000493838		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
Frame-shit	ENST00000424469	ENST00000398015		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
5CDS-intron	ENST00000424469	ENST00000488154		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
5CDS-intron	ENST00000424469	ENST00000493838		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
intron-3CDS	ENST00000555549	ENST00000398015		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
intron-intron	ENST00000555549	ENST00000488154		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
intron-intron	ENST00000555549	ENST00000493838		TCGA	RV	HNSC	TCGA-H7-A76A-01A	SLCO3A1	chr15	92459688	+	EPHB1	chr3	134959990	+
Frame-shit	ENST00000361368	ENST00000312891		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
Frame-shit	ENST00000361125	ENST00000312891		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
intron-3CDS	ENST00000480055	ENST00000312891		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
5CDS-intron	ENST00000383836	ENST00000352432		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000383836	ENST00000343816		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000383836	ENST00000360273		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000383836	ENST00000383800		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000383836	ENST00000397077		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-intron	ENST00000383836	ENST00000467702		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-intron	ENST00000360413	ENST00000352432		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000360413	ENST00000343816		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000360413	ENST00000360273		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000360413	ENST00000383800		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-5UTR	ENST00000360413	ENST00000397077		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
5CDS-intron	ENST00000360413	ENST00000467702		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
intron-intron	ENST00000433332	ENST00000352432		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
intron-5UTR	ENST00000433332	ENST00000343816		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
intron-5UTR	ENST00000433332	ENST00000360273		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
intron-5UTR	ENST00000433332	ENST00000383800		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
intron-5UTR	ENST00000433332	ENST00000397077		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
intron-intron	ENST00000433332	ENST00000467702		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10491546	-
Frame-shit	ENST00000393651	ENST00000419735		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
5CDS-5UTR	ENST00000393651	ENST00000477775		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
5CDS-intron	ENST00000393651	ENST00000318724		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
5CDS-intron	ENST00000393651	ENST00000478915		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
5CDS-intron	ENST00000393651	ENST00000388807		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
5CDS-5UTR	ENST00000393651	ENST00000472910		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-3CDS	ENST00000357311	ENST00000419735		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-5UTR	ENST00000357311	ENST00000477775		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000357311	ENST00000318724		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000357311	ENST00000478915		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000357311	ENST00000388807		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-5UTR	ENST00000357311	ENST00000472910		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-3CDS	ENST00000489828	ENST00000419735		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-5UTR	ENST00000489828	ENST00000477775		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000489828	ENST00000318724		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000489828	ENST00000478915		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000489828	ENST00000388807		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-5UTR	ENST00000489828	ENST00000472910		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-3CDS	ENST00000493638	ENST00000419735		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-5UTR	ENST00000493638	ENST00000477775		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000493638	ENST00000318724		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000493638	ENST00000478915		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-intron	ENST00000493638	ENST00000388807		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
intron-5UTR	ENST00000493638	ENST00000472910		TCGA	RV	HNSC	TCGA-CV-7418-01A	SRPK2	chr7	105029095	-	ATXN7L1	chr7	105305735	-
Frame-shit	ENST00000355683	ENST00000216361		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
Frame-shit	ENST00000355683	ENST00000396618		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
Frame-shit	ENST00000355683	ENST00000475087		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
5CDS-5UTR	ENST00000355683	ENST00000460581		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
5CDS-intron	ENST00000355683	ENST00000382493		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
Frame-shit	ENST00000357479	ENST00000216361		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
Frame-shit	ENST00000357479	ENST00000396618		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
Frame-shit	ENST00000357479	ENST00000475087		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
5CDS-5UTR	ENST00000357479	ENST00000460581		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
5CDS-intron	ENST00000357479	ENST00000382493		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
intron-3CDS	ENST00000366206	ENST00000216361		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
intron-3CDS	ENST00000366206	ENST00000396618		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
intron-3CDS	ENST00000366206	ENST00000475087		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
intron-5UTR	ENST00000366206	ENST00000460581		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
intron-intron	ENST00000366206	ENST00000382493		TCGA	RV	HNSC	TCGA-C9-A480-01A	STRN3	chr14	31495110	-	COCH	chr14	31346778	+
In-frame	ENST00000216297	ENST00000430710		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
In-frame	ENST00000216297	ENST00000399982		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
In-frame	ENST00000216297	ENST00000557364		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
5CDS-intron	ENST00000216297	ENST00000555962		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
In-frame	ENST00000555943	ENST00000430710		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
In-frame	ENST00000555943	ENST00000399982		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
In-frame	ENST00000555943	ENST00000557364		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
5CDS-intron	ENST00000555943	ENST00000555962		TCGA	RV	HNSC	TCGA-CQ-6222-01A	SUPT16H	chr14	21852021	-	CHD8	chr14	21878147	-
Frame-shit	ENST00000314616	ENST00000428869		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000314616	ENST00000431965		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000314616	ENST00000256425		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000314616	ENST00000588444		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000314616	ENST00000436348		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000314616	ENST00000398439		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
5CDS-intron	ENST00000314616	ENST00000587291		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000347486	ENST00000428869		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000347486	ENST00000431965		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000347486	ENST00000256425		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000347486	ENST00000588444		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000347486	ENST00000436348		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
Frame-shit	ENST00000347486	ENST00000398439		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
5CDS-intron	ENST00000347486	ENST00000587291		TCGA	RV	HNSC	TCGA-CV-5966-01A	SUPT6H	chr17	27008422	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000366890	ENST00000264930		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TAF1A	chr1	222757470	-	SLC12A7	chr5	1085588	-
Frame-shit	ENST00000350027	ENST00000264930		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TAF1A	chr1	222757470	-	SLC12A7	chr5	1085588	-
In-frame	ENST00000352967	ENST00000264930		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TAF1A	chr1	222757470	-	SLC12A7	chr5	1085588	-
intron-3CDS	ENST00000391882	ENST00000264930		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TAF1A	chr1	222757470	-	SLC12A7	chr5	1085588	-
In-frame	ENST00000543857	ENST00000264930		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TAF1A	chr1	222757470	-	SLC12A7	chr5	1085588	-
5UTR-3CDS	ENST00000465263	ENST00000264930		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TAF1A	chr1	222757470	-	SLC12A7	chr5	1085588	-
In-frame	ENST00000264866	ENST00000315368		TCGA	RV	HNSC	TCGA-HD-7753-01A	TBC1D19	chr4	26641809	+	ANAPC4	chr4	25381996	+
In-frame	ENST00000264866	ENST00000510092		TCGA	RV	HNSC	TCGA-HD-7753-01A	TBC1D19	chr4	26641809	+	ANAPC4	chr4	25381996	+
In-frame	ENST00000511789	ENST00000315368		TCGA	RV	HNSC	TCGA-HD-7753-01A	TBC1D19	chr4	26641809	+	ANAPC4	chr4	25381996	+
In-frame	ENST00000511789	ENST00000510092		TCGA	RV	HNSC	TCGA-HD-7753-01A	TBC1D19	chr4	26641809	+	ANAPC4	chr4	25381996	+
3UTR-3CDS	ENST00000515568	ENST00000315368		TCGA	RV	HNSC	TCGA-HD-7753-01A	TBC1D19	chr4	26641809	+	ANAPC4	chr4	25381996	+
3UTR-3CDS	ENST00000515568	ENST00000510092		TCGA	RV	HNSC	TCGA-HD-7753-01A	TBC1D19	chr4	26641809	+	ANAPC4	chr4	25381996	+
intron-5UTR	ENST00000389327	ENST00000521243		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-3UTR	ENST00000389327	ENST00000521035		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000389327	ENST00000427715		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000389327	ENST00000519688		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-intron	ENST00000389327	ENST00000456015		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-5UTR	ENST00000389328	ENST00000521243		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-3UTR	ENST00000389328	ENST00000521035		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-5UTR	ENST00000389328	ENST00000427715		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-5UTR	ENST00000389328	ENST00000519688		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-intron	ENST00000389328	ENST00000456015		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-5UTR	ENST00000438773	ENST00000521243		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-3UTR	ENST00000438773	ENST00000521035		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-5UTR	ENST00000438773	ENST00000427715		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-5UTR	ENST00000438773	ENST00000519688		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
5CDS-intron	ENST00000438773	ENST00000456015		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000522504	ENST00000521243		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-3UTR	ENST00000522504	ENST00000521035		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000522504	ENST00000427715		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-5UTR	ENST00000522504	ENST00000519688		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-intron	ENST00000522504	ENST00000456015		TCGA	RV	HNSC	TCGA-CV-A45X-01A	TRAPPC9	chr8	141436714	-	SLC30A8	chr8	118159058	+
intron-3CDS	ENST00000351097	ENST00000359568		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
intron-3UTR	ENST00000351097	ENST00000480896		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
In-frame	ENST00000285679	ENST00000359568		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
5CDS-3UTR	ENST00000285679	ENST00000480896		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
In-frame	ENST00000285681	ENST00000359568		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
5CDS-3UTR	ENST00000285681	ENST00000480896		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
In-frame	ENST00000400183	ENST00000359568		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
5CDS-3UTR	ENST00000400183	ENST00000480896		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
3UTR-3CDS	ENST00000547201	ENST00000359568		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
3UTR-3UTR	ENST00000547201	ENST00000480896		TCGA	RV	HNSC	TCGA-CN-4739-01A	USP25	chr21	17183529	+	PCNT	chr21	47841884	+
In-frame	ENST00000219689	ENST00000383018		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	USP31	chr16	23159959	-	SNRNP25	chr16	105459	+
5CDS-3UTR	ENST00000219689	ENST00000493672		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	USP31	chr16	23159959	-	SNRNP25	chr16	105459	+
intron-3CDS	ENST00000567975	ENST00000383018		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	USP31	chr16	23159959	-	SNRNP25	chr16	105459	+
intron-3UTR	ENST00000567975	ENST00000493672		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	USP31	chr16	23159959	-	SNRNP25	chr16	105459	+
Frame-shit	ENST00000216639	ENST00000554335		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
Frame-shit	ENST00000216639	ENST00000251091		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
5CDS-3UTR	ENST00000216639	ENST00000555112		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
5CDS-3UTR	ENST00000216639	ENST00000392067		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
5CDS-3UTR	ENST00000216639	ENST00000357634		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
5CDS-intron	ENST00000216639	ENST00000555192		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
3UTR-3CDS	ENST00000555067	ENST00000554335		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
3UTR-3CDS	ENST00000555067	ENST00000251091		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
3UTR-3UTR	ENST00000555067	ENST00000555112		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
3UTR-3UTR	ENST00000555067	ENST00000392067		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
3UTR-3UTR	ENST00000555067	ENST00000357634		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
3UTR-intron	ENST00000555067	ENST00000555192		TCGA	RV	HNSC	TCGA-HD-7753-01A	VRK1	chr14	97327072	+	SAMD4A	chr14	55168780	+
5UTR-5UTR	ENST00000317025	ENST00000519476		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000317025	ENST00000297720		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000317025	ENST00000524874		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000317025	ENST00000379957		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000317025	ENST00000523983		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000317025	ENST00000527710		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000317025	ENST00000528827		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000433384	ENST00000519476		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000433384	ENST00000297720		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000433384	ENST00000524874		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000433384	ENST00000379957		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000433384	ENST00000523983		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000433384	ENST00000527710		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000433384	ENST00000528827		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000527502	ENST00000519476		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000527502	ENST00000297720		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000527502	ENST00000524874		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000527502	ENST00000379957		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000527502	ENST00000523983		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000527502	ENST00000527710		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000527502	ENST00000528827		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000316985	ENST00000519476		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000316985	ENST00000297720		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000316985	ENST00000524874		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000316985	ENST00000379957		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000316985	ENST00000523983		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000316985	ENST00000527710		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000316985	ENST00000528827		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000525081	ENST00000519476		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000525081	ENST00000297720		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000525081	ENST00000524874		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000525081	ENST00000379957		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000525081	ENST00000523983		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-intron	ENST00000525081	ENST00000527710		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
intron-intron	ENST00000525081	ENST00000528827		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	WHSC1L1	chr8	38239317	-	LETM2	chr8	38245468	+
In-frame	ENST00000326648	ENST00000204549		TCGA	RV	HNSC	TCGA-CQ-6225-01A	ZNF609	chr15	64792365	+	PDCD7	chr15	65421508	-
In-frame	ENST00000416172	ENST00000204549		TCGA	RV	HNSC	TCGA-CQ-6225-01A	ZNF609	chr15	64792365	+	PDCD7	chr15	65421508	-
intron-3CDS	ENST00000559364	ENST00000204549		TCGA	RV	HNSC	TCGA-CQ-6225-01A	ZNF609	chr15	64792365	+	PDCD7	chr15	65421508	-
5CDS-5UTR	ENST00000221561	ENST00000228741		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000221561	ENST00000552142		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000221561	ENST00000549529		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000327141	ENST00000228741		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000327141	ENST00000552142		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-intron	ENST00000327141	ENST00000549529		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000592330	ENST00000228741		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000592330	ENST00000552142		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-intron	ENST00000592330	ENST00000549529		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000586839	ENST00000228741		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000586839	ENST00000552142		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
intron-intron	ENST00000586839	ENST00000549529		TCGA	RV	HNSC	TCGA-CN-6012-01A	AES	chr19	3052908	-	ELK3	chr12	96588323	+
5UTR-5UTR	ENST00000561924	ENST00000439040		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
5UTR-5UTR	ENST00000561924	ENST00000256031		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000290858	ENST00000439040		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000290858	ENST00000256031		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000412916	ENST00000439040		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000412916	ENST00000256031		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
intron-5UTR	ENST00000568858	ENST00000439040		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
intron-5UTR	ENST00000568858	ENST00000256031		TCGA	RV	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67070658	+	ATP13A3	chr3	194182965	-
In-frame	ENST00000372522	ENST00000431635		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
In-frame	ENST00000372522	ENST00000236051		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
5CDS-intron	ENST00000372522	ENST00000472982		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
Frame-shit	ENST00000372521	ENST00000431635		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
Frame-shit	ENST00000372521	ENST00000236051		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
5CDS-intron	ENST00000372521	ENST00000472982		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
Frame-shit	ENST00000537227	ENST00000431635		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
Frame-shit	ENST00000537227	ENST00000236051		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
5CDS-intron	ENST00000537227	ENST00000472982		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
5UTR-3CDS	ENST00000497437	ENST00000431635		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
5UTR-3CDS	ENST00000497437	ENST00000236051		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
5UTR-intron	ENST00000497437	ENST00000472982		TCGA	RV	HNSC	TCGA-BB-8596-01A	CCDC23	chr1	43282102	-	EBNA1BP2	chr1	43632590	-
In-frame	ENST00000357749	ENST00000382148		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000357749	ENST00000447367		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000357749	ENST00000382150		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000357749	ENST00000382152		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000357749	ENST00000509207		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000357749	ENST00000382149		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000357749	ENST00000359001		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000382148		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000447367		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000382150		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000382152		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000467744	ENST00000509207		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000467744	ENST00000382149		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000467744	ENST00000359001		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000537751	ENST00000382148		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000537751	ENST00000447367		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000537751	ENST00000382150		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
In-frame	ENST00000537751	ENST00000382152		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000537751	ENST00000509207		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000537751	ENST00000382149		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000537751	ENST00000359001		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000382148		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000447367		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000382150		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000382152		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000358786	ENST00000509207		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000358786	ENST00000382149		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000358786	ENST00000359001		TCGA	RV	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85149193	-	KCNIP4	chr4	20852290	-
5CDS-intron	ENST00000361654	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000361654	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000361654	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000361654	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000545889	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000545889	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000545889	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000545889	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000302528	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000302528	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000302528	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000302528	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000358808	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000358808	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000358808	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000358808	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000537178	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000537178	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000537178	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000537178	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000540338	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000540338	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-5UTR	ENST00000540338	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
5CDS-intron	ENST00000540338	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000536634	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000536634	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000536634	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000536634	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000540539	ENST00000536306		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000540539	ENST00000543897		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000540539	ENST00000336229		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000540539	ENST00000538116		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CLIP1	chr12	122861936	-	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000448521	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000448521	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000456905	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000456905	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000440166	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000440166	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000452943	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000452943	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000468694	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000468694	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
3UTR-intron	ENST00000494774	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
3UTR-intron	ENST00000494774	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000490734	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000490734	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000497184	ENST00000322349		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-intron	ENST00000497184	ENST00000547833		TCGA	RV	HNSC	TCGA-CR-7382-01A	DBNL	chr7	44101257	+	EEA1	chr12	93229203	-
intron-5UTR	ENST00000342350	ENST00000344686		TCGA	RV	HNSC	TCGA-BB-7871-01A	DCAKD	chr17	43128921	-	MAP3K14	chr17	43362316	-
5UTR-5UTR	ENST00000588499	ENST00000344686		TCGA	RV	HNSC	TCGA-BB-7871-01A	DCAKD	chr17	43128921	-	MAP3K14	chr17	43362316	-
5UTR-5UTR	ENST00000588295	ENST00000344686		TCGA	RV	HNSC	TCGA-BB-7871-01A	DCAKD	chr17	43128921	-	MAP3K14	chr17	43362316	-
intron-5UTR	ENST00000310604	ENST00000344686		TCGA	RV	HNSC	TCGA-BB-7871-01A	DCAKD	chr17	43128921	-	MAP3K14	chr17	43362316	-
intron-5UTR	ENST00000452796	ENST00000344686		TCGA	RV	HNSC	TCGA-BB-7871-01A	DCAKD	chr17	43128921	-	MAP3K14	chr17	43362316	-
5CDS-intron	ENST00000371269	ENST00000260356		TCGA	RV	HNSC	TCGA-CV-7255-01A	DHCR24	chr1	55315306	-	THBS1	chr15	39873127	+
intron-intron	ENST00000537443	ENST00000260356		TCGA	RV	HNSC	TCGA-CV-7255-01A	DHCR24	chr1	55315306	-	THBS1	chr15	39873127	+
intron-intron	ENST00000535035	ENST00000260356		TCGA	RV	HNSC	TCGA-CV-7255-01A	DHCR24	chr1	55315306	-	THBS1	chr15	39873127	+
5UTR-3CDS	ENST00000392509	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
5UTR-3CDS	ENST00000392509	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
5UTR-3CDS	ENST00000548342	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
5UTR-3CDS	ENST00000548342	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000242577	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000242577	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000548214	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000548214	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000392508	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000392508	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000550178	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000550178	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000550845	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000550845	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000549989	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000549989	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000552870	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000552870	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000552316	ENST00000288532		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-3CDS	ENST00000552316	ENST00000445328		TCGA	RV	HNSC	TCGA-F7-7848-01A	DYNLL1	chr12	120907907	+	COQ5	chr12	120947926	-
intron-intron	ENST00000462274	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-intron	ENST00000462274	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-intron	ENST00000462274	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-intron	ENST00000462274	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-intron	ENST00000462274	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-5UTR	ENST00000462274	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-intron	ENST00000462274	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
intron-intron	ENST00000462274	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000338785	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000338785	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000451934	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000451934	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000321219	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000321219	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000339659	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000339659	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000398960	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398960	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000398956	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000398956	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000344691		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000325074		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000437180		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000300305		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000399240		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000455387	ENST00000486278		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000494829		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000455387	ENST00000358356		TCGA	RV	HNSC	TCGA-CQ-7065-01A	DYRK1A	chr21	38868560	+	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000234590	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-6488-01A	ENO1	chr1	8921061	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000234590	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-6488-01A	ENO1	chr1	8921061	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000367511	ENST00000377559		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
5CDS-intron	ENST00000367511	ENST00000265459		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
5CDS-intron	ENST00000367511	ENST00000301894		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
5CDS-intron	ENST00000367511	ENST00000377551		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
5CDS-intron	ENST00000367511	ENST00000409571		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
5CDS-intron	ENST00000367511	ENST00000496291		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
intron-intron	ENST00000487074	ENST00000377559		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
intron-intron	ENST00000487074	ENST00000265459		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
intron-intron	ENST00000487074	ENST00000301894		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
intron-intron	ENST00000487074	ENST00000377551		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
intron-intron	ENST00000487074	ENST00000409571		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
intron-intron	ENST00000487074	ENST00000496291		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	FAM129A	chr1	184943434	-	NRXN2	chr11	64457948	-
Frame-shit	ENST00000588025	ENST00000308724		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000588025	ENST00000397120		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000588025	ENST00000556277		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
Frame-shit	ENST00000423140	ENST00000308724		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000423140	ENST00000397120		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000423140	ENST00000556277		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
Frame-shit	ENST00000314606	ENST00000308724		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000314606	ENST00000397120		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000314606	ENST00000556277		TCGA	RV	HNSC	TCGA-CV-5978-01A	FARSA	chr19	13033294	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000311172	ENST00000575800		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000311172	ENST00000301329		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000311172	ENST00000301328		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000311172	ENST00000536578		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409314	ENST00000575800		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409314	ENST00000301329		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409314	ENST00000301328		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000409314	ENST00000536578		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409418	ENST00000575800		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409418	ENST00000301329		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409418	ENST00000301328		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000409418	ENST00000536578		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000458644	ENST00000575800		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000458644	ENST00000301329		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000458644	ENST00000301328		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-5UTR	ENST00000458644	ENST00000536578		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409853	ENST00000575800		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409853	ENST00000301329		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000409853	ENST00000301328		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000409853	ENST00000536578		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000409263	ENST00000575800		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000409263	ENST00000301329		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000409263	ENST00000301328		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
intron-5UTR	ENST00000409263	ENST00000536578		TCGA	RV	HNSC	TCGA-CV-6962-01A	FCHSD2	chr11	72712035	-	GLOD4	chr17	681984	-
Frame-shit	ENST00000343958	ENST00000436874		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000343958	ENST00000261219		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000343958	ENST00000356859		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
Frame-shit	ENST00000546711	ENST00000436874		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000546711	ENST00000261219		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000546711	ENST00000356859		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
Frame-shit	ENST00000549499	ENST00000436874		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000549499	ENST00000261219		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000549499	ENST00000356859		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5UTR-3CDS	ENST00000550368	ENST00000436874		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5UTR-5UTR	ENST00000550368	ENST00000261219		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
5UTR-5UTR	ENST00000550368	ENST00000356859		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	FGD6	chr12	95602619	-	VEZT	chr12	95645716	+
Frame-shit	ENST00000481110	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000481110	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000481110	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000440486	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000440486	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000440486	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000412135	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000412135	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000412135	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000340107	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000340107	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000340107	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000260795	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000260795	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000260795	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000352904	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000352904	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000352904	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000474521	ENST00000433971		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000474521	ENST00000345063		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000474521	ENST00000488841		TCGA	RV	HNSC	TCGA-CV-7177-01A	FGFR3	chr4	1795770	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000275364	ENST00000495893		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000275364	ENST00000494943		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000275364	ENST00000467570		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000275364	ENST00000474275		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000275364	ENST00000497658		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000275364	ENST00000481639		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
Frame-shit	ENST00000544127	ENST00000495893		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000544127	ENST00000494943		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000544127	ENST00000467570		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000544127	ENST00000474275		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000544127	ENST00000497658		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000544127	ENST00000481639		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-3CDS	ENST00000491117	ENST00000495893		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000491117	ENST00000494943		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000491117	ENST00000467570		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000491117	ENST00000474275		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000491117	ENST00000497658		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000491117	ENST00000481639		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-3CDS	ENST00000407904	ENST00000495893		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407904	ENST00000494943		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407904	ENST00000467570		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407904	ENST00000474275		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407904	ENST00000497658		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407904	ENST00000481639		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-3CDS	ENST00000407653	ENST00000495893		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407653	ENST00000494943		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407653	ENST00000467570		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407653	ENST00000474275		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407653	ENST00000497658		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000407653	ENST00000481639		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-3CDS	ENST00000396960	ENST00000495893		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000396960	ENST00000494943		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000396960	ENST00000467570		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000396960	ENST00000474275		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000396960	ENST00000497658		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
intron-5UTR	ENST00000396960	ENST00000481639		TCGA	RV	HNSC	TCGA-CQ-A4CA-01A	GNA12	chr7	2883487	-	PHC3	chr3	169896726	-
5CDS-5UTR	ENST00000251808	ENST00000520643		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000251808	ENST00000251809		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000251808	ENST00000520508		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000251808	ENST00000388798		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-intron	ENST00000251808	ENST00000523302		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000395927	ENST00000520643		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000395927	ENST00000251809		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000395927	ENST00000520508		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-5UTR	ENST00000395927	ENST00000388798		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
5CDS-intron	ENST00000395927	ENST00000523302		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
intron-5UTR	ENST00000517674	ENST00000520643		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
intron-5UTR	ENST00000517674	ENST00000251809		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
intron-5UTR	ENST00000517674	ENST00000520508		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
intron-5UTR	ENST00000517674	ENST00000388798		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
intron-intron	ENST00000517674	ENST00000523302		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102661727	+	SPAG1	chr8	101174507	+
Frame-shit	ENST00000315765	ENST00000526355		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	HEPHL1	chr11	93797676	+	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000315765	ENST00000282249		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	HEPHL1	chr11	93797676	+	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000315765	ENST00000347596		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	HEPHL1	chr11	93797676	+	GUCY1A2	chr11	106856857	-
5CDS-intron	ENST00000348943	ENST00000393958		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-5UTR	ENST00000348943	ENST00000393960		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000348943	ENST00000355677		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000348943	ENST00000524491		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000348943	ENST00000529047		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000348943	ENST00000393955		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000348943	ENST00000528224		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000325495	ENST00000393958		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-5UTR	ENST00000325495	ENST00000393960		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000325495	ENST00000355677		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000325495	ENST00000524491		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000325495	ENST00000529047		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000325495	ENST00000393955		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
5CDS-intron	ENST00000325495	ENST00000528224		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-intron	ENST00000602219	ENST00000393958		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-5UTR	ENST00000602219	ENST00000393960		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-intron	ENST00000602219	ENST00000355677		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-intron	ENST00000602219	ENST00000524491		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-intron	ENST00000602219	ENST00000529047		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-intron	ENST00000602219	ENST00000393955		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
intron-intron	ENST00000602219	ENST00000528224		TCGA	RV	HNSC	TCGA-IQ-7631-01A	HNRNPM	chr19	8509995	+	PC	chr11	66721907	-
In-frame	ENST00000577917	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000577917	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000577917	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000577917	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000577917	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000577917	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000577917	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000581893	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000581893	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581893	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581893	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581893	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581893	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581893	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000411793	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000411793	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000411793	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000411793	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000411793	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000411793	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000411793	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000301382	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000301382	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000301382	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000301382	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000301382	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000301382	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000301382	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000581773	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000581773	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581773	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581773	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581773	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581773	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581773	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000423665	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000423665	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000423665	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000423665	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000423665	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000423665	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000423665	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000583928	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000583928	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000583928	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000583928	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000583928	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000583928	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000583928	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000342970	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000342970	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000342970	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000342970	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000342970	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000342970	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000342970	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-3CDS	ENST00000422535	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-3CDS	ENST00000422535	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000422535	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000422535	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000422535	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000422535	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000422535	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-3CDS	ENST00000577701	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-3CDS	ENST00000577701	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000577701	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000577701	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000577701	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000577701	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
intron-intron	ENST00000577701	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000581521	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000581521	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581521	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581521	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581521	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581521	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000581521	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000339423	ENST00000292123		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000339423	ENST00000592224		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000339423	ENST00000586934		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000339423	ENST00000454510		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000339423	ENST00000433404		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000339423	ENST00000588852		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
5CDS-intron	ENST00000339423	ENST00000538656		TCGA	RV	HNSC	TCGA-CR-7374-01A	HSD11B1L	chr19	5687679	+	SAFB	chr19	5664033	+
In-frame	ENST00000353170	ENST00000309893		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
5CDS-intron	ENST00000353170	ENST00000568801		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
In-frame	ENST00000347925	ENST00000309893		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
5CDS-intron	ENST00000347925	ENST00000568801		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
intron-3CDS	ENST00000566349	ENST00000309893		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
intron-intron	ENST00000566349	ENST00000568801		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
In-frame	ENST00000270583	ENST00000309893		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
5CDS-intron	ENST00000270583	ENST00000568801		TCGA	RV	HNSC	TCGA-BA-A4II-01A	KLHDC4	chr16	87799398	-	CA5A	chr16	87936126	-
Frame-shit	ENST00000226725	ENST00000317133		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000375741		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000375739		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000370623		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000544132		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000218789		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000375736		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000426073		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000375737		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000375723		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000226725	ENST00000478679		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
5CDS-intron	ENST00000226725	ENST00000483189		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000317133		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000375741		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000375739		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000370623		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000544132		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000218789		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000375736		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000426073		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000375737		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000375723		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000514860	ENST00000478679		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
5CDS-intron	ENST00000514860	ENST00000483189		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000317133		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000375741		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000375739		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000370623		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000544132		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000218789		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000375736		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000426073		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000375737		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000375723		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000538127	ENST00000478679		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
5CDS-intron	ENST00000538127	ENST00000483189		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000317133		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000375741		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000375739		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000370623		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000544132		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000218789		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000375736		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000426073		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000375737		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000375723		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000421009	ENST00000478679		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
5CDS-intron	ENST00000421009	ENST00000483189		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000317133		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000375741		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000375739		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000370623		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000544132		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000218789		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000375736		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000426073		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000375737		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000375723		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000506761	ENST00000478679		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
5CDS-intron	ENST00000506761	ENST00000483189		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000317133		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000375741		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000375739		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000370623		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000544132		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000218789		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000375736		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000426073		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000375737		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000375723		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-3CDS	ENST00000509028	ENST00000478679		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
3UTR-intron	ENST00000509028	ENST00000483189		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	KLHL2	chr4	166184511	+	ARHGEF7	chr13	111929934	+
Frame-shit	ENST00000261667	ENST00000380752		TCGA	RV	HNSC	TCGA-D6-6827-01A	KPNA3	chr13	50285027	-	SLC7A1	chr13	30107119	-
5CDS-intron	ENST00000261667	ENST00000473577		TCGA	RV	HNSC	TCGA-D6-6827-01A	KPNA3	chr13	50285027	-	SLC7A1	chr13	30107119	-
5CDS-intron	ENST00000167586	ENST00000371917		TCGA	RV	HNSC	TCGA-CR-7382-01A	KRT14	chr17	39738531	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000167586	ENST00000493140		TCGA	RV	HNSC	TCGA-CR-7382-01A	KRT14	chr17	39738531	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000252242	ENST00000264818		TCGA	RV	HNSC	TCGA-CV-6933-01A	KRT5	chr12	52908359	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000252242	ENST00000524462		TCGA	RV	HNSC	TCGA-CV-6933-01A	KRT5	chr12	52908359	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000252242	ENST00000525621		TCGA	RV	HNSC	TCGA-CV-6933-01A	KRT5	chr12	52908359	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000252242	ENST00000529370		TCGA	RV	HNSC	TCGA-CV-6933-01A	KRT5	chr12	52908359	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000252242	ENST00000529422		TCGA	RV	HNSC	TCGA-CV-6933-01A	KRT5	chr12	52908359	-	TYK2	chr19	10491352	-
Frame-shit	ENST00000216237	ENST00000296350		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	L3MBTL2	chr22	41617291	+	MFI2	chr3	196744161	-
5CDS-intron	ENST00000216237	ENST00000296351		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	L3MBTL2	chr22	41617291	+	MFI2	chr3	196744161	-
intron-3CDS	ENST00000489136	ENST00000296350		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	L3MBTL2	chr22	41617291	+	MFI2	chr3	196744161	-
intron-intron	ENST00000489136	ENST00000296351		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	L3MBTL2	chr22	41617291	+	MFI2	chr3	196744161	-
Frame-shit	ENST00000517503	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
5CDS-intron	ENST00000517503	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
Frame-shit	ENST00000292494	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
5CDS-intron	ENST00000292494	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
In-frame	ENST00000429120	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
5CDS-intron	ENST00000429120	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
Frame-shit	ENST00000521699	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
5CDS-intron	ENST00000521699	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000520531	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000520531	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
Frame-shit	ENST00000520466	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
5CDS-intron	ENST00000520466	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000521003	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000521003	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000522528	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000522528	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000522971	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000522971	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000519611	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000519611	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
In-frame	ENST00000521182	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
5CDS-intron	ENST00000521182	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000519546	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000519546	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000523847	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000523847	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000522024	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000522024	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-3CDS	ENST00000519615	ENST00000301263		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
intron-intron	ENST00000519615	ENST00000518434		TCGA	RV	HNSC	TCGA-F7-A623-01A	LY6E	chr8	144103826	+	LY6D	chr8	143868008	-
In-frame	ENST00000263881	ENST00000318522		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
In-frame	ENST00000263881	ENST00000402711		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000263881	ENST00000482660		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000263881	ENST00000401738		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000263881	ENST00000453191		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5UTR-3CDS	ENST00000437545	ENST00000318522		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5UTR-3CDS	ENST00000437545	ENST00000402711		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5UTR-intron	ENST00000437545	ENST00000482660		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5UTR-intron	ENST00000437545	ENST00000401738		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5UTR-intron	ENST00000437545	ENST00000453191		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
In-frame	ENST00000341681	ENST00000318522		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
In-frame	ENST00000341681	ENST00000402711		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000341681	ENST00000482660		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000341681	ENST00000401738		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000341681	ENST00000453191		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
In-frame	ENST00000484274	ENST00000318522		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
In-frame	ENST00000484274	ENST00000402711		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000484274	ENST00000482660		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000484274	ENST00000401738		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5CDS-intron	ENST00000484274	ENST00000453191		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-3CDS	ENST00000536018	ENST00000318522		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-3CDS	ENST00000536018	ENST00000402711		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-intron	ENST00000536018	ENST00000482660		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-intron	ENST00000536018	ENST00000401738		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-intron	ENST00000536018	ENST00000453191		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-3CDS	ENST00000474502	ENST00000318522		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-3CDS	ENST00000474502	ENST00000402711		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-intron	ENST00000474502	ENST00000482660		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-intron	ENST00000474502	ENST00000401738		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
intron-intron	ENST00000474502	ENST00000453191		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	MAP4K3	chr2	39605207	-	EML4	chr2	42507990	+
5UTR-5UTR	ENST00000373511	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000373511	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373511	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373511	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373511	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373511	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373511	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000373498	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000373498	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373498	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373498	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373498	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373498	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373498	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000350766	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000350766	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000350766	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000350766	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000350766	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000350766	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000350766	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000373503	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000373503	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373503	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373503	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373503	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373503	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000373503	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000394063	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000394063	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394063	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394063	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394063	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394063	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394063	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000265960	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000265960	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000265960	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000265960	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000265960	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000265960	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000265960	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000373497	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000373497	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373497	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373497	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373497	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373497	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000373497	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000394060	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-5UTR	ENST00000394060	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394060	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394060	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394060	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394060	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
5UTR-intron	ENST00000394060	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000483937	ENST00000473039		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-5UTR	ENST00000483937	ENST00000373624		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000483937	ENST00000542603		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000483937	ENST00000394219		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000483937	ENST00000373620		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000483937	ENST00000394215		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
intron-intron	ENST00000483937	ENST00000373618		TCGA	RV	HNSC	TCGA-CV-A45T-01A	MAPKAP1	chr9	128469250	-	DENND1A	chr9	126554909	-
Frame-shit	ENST00000331320	ENST00000430725		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000331320	ENST00000325438		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000331320	ENST00000458164		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000331320	ENST00000447393		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
In-frame	ENST00000331320	ENST00000547217		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000331320	ENST00000551743		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
In-frame	ENST00000331320	ENST00000551801		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000406191	ENST00000430725		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000406191	ENST00000325438		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000406191	ENST00000458164		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000406191	ENST00000447393		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
In-frame	ENST00000406191	ENST00000547217		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000406191	ENST00000551743		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
In-frame	ENST00000406191	ENST00000551801		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000405646	ENST00000430725		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000405646	ENST00000325438		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000405646	ENST00000458164		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000405646	ENST00000447393		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
In-frame	ENST00000405646	ENST00000547217		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
Frame-shit	ENST00000405646	ENST00000551743		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
In-frame	ENST00000405646	ENST00000551801		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000430725		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000325438		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000458164		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000447393		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000547217		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000551743		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000435036	ENST00000551801		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MTA1	chr14	105886400	+	PACS2	chr14	105860891	+
intron-3CDS	ENST00000419292	ENST00000422959		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000307305		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000424760		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000415251		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000275575		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000450574		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000416283		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000419292	ENST00000248550		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
intron-intron	ENST00000419292	ENST00000454592		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000422959		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000307305		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000424760		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000415251		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000275575		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000450574		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000416283		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000351870	ENST00000248550		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000351870	ENST00000454592		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000422959		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000307305		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000424760		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000415251		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000275575		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000450574		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000416283		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000406735	ENST00000248550		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-intron	ENST00000406735	ENST00000454592		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000422959		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000307305		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000424760		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000415251		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000275575		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000450574		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000416283		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-3CDS	ENST00000481516	ENST00000248550		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
5UTR-intron	ENST00000481516	ENST00000454592		TCGA	RV	HNSC	TCGA-CQ-5326-01A	MTERF	chr7	91509369	-	PHTF2	chr7	77522925	+
Frame-shit	ENST00000409261	ENST00000281924		TCGA	RV	HNSC	TCGA-IQ-A6SH-01A	NCKAP5	chr2	134060609	-	TMEM163	chr2	135223796	-
Frame-shit	ENST00000409213	ENST00000281924		TCGA	RV	HNSC	TCGA-IQ-A6SH-01A	NCKAP5	chr2	134060609	-	TMEM163	chr2	135223796	-
Frame-shit	ENST00000405974	ENST00000281924		TCGA	RV	HNSC	TCGA-IQ-A6SH-01A	NCKAP5	chr2	134060609	-	TMEM163	chr2	135223796	-
Frame-shit	ENST00000317721	ENST00000281924		TCGA	RV	HNSC	TCGA-IQ-A6SH-01A	NCKAP5	chr2	134060609	-	TMEM163	chr2	135223796	-
intron-3CDS	ENST00000473859	ENST00000281924		TCGA	RV	HNSC	TCGA-IQ-A6SH-01A	NCKAP5	chr2	134060609	-	TMEM163	chr2	135223796	-
Frame-shit	ENST00000277541	ENST00000215832		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
Frame-shit	ENST00000277541	ENST00000398822		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
Frame-shit	ENST00000277541	ENST00000544786		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
5CDS-intron	ENST00000277541	ENST00000491588		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
intron-3CDS	ENST00000491649	ENST00000215832		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
intron-3CDS	ENST00000491649	ENST00000398822		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
intron-3CDS	ENST00000491649	ENST00000544786		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
intron-intron	ENST00000491649	ENST00000491588		TCGA	RV	HNSC	TCGA-CN-A498-01A	NOTCH1	chr9	139405604	-	MAPK1	chr22	22143097	-
Frame-shit	ENST00000607016	ENST00000504376		TCGA	RV	HNSC	TCGA-CR-7379-01A	NUDT3	chr6	34360041	-	CDH12	chr5	21817241	-
Frame-shit	ENST00000607016	ENST00000382254		TCGA	RV	HNSC	TCGA-CR-7379-01A	NUDT3	chr6	34360041	-	CDH12	chr5	21817241	-
Frame-shit	ENST00000607016	ENST00000522262		TCGA	RV	HNSC	TCGA-CR-7379-01A	NUDT3	chr6	34360041	-	CDH12	chr5	21817241	-
5CDS-5UTR	ENST00000607016	ENST00000521384		TCGA	RV	HNSC	TCGA-CR-7379-01A	NUDT3	chr6	34360041	-	CDH12	chr5	21817241	-
intron-3CDS	ENST00000351960	ENST00000339276		TCGA	RV	HNSC	TCGA-CV-5979-01A	NUMA1	chr11	71732272	-	SFN	chr1	27189704	+
intron-3CDS	ENST00000358965	ENST00000339276		TCGA	RV	HNSC	TCGA-CV-5979-01A	NUMA1	chr11	71732272	-	SFN	chr1	27189704	+
intron-3CDS	ENST00000393695	ENST00000339276		TCGA	RV	HNSC	TCGA-CV-5979-01A	NUMA1	chr11	71732272	-	SFN	chr1	27189704	+
intron-3CDS	ENST00000543450	ENST00000339276		TCGA	RV	HNSC	TCGA-CV-5979-01A	NUMA1	chr11	71732272	-	SFN	chr1	27189704	+
5CDS-3UTR	ENST00000445937	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000445937	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000445937	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000445937	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000445937	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000445937	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000531443	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000531443	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000531443	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000531443	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000531443	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000531443	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000517566	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000517566	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-3UTR	ENST00000517566	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000517566	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000517566	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5CDS-intron	ENST00000517566	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5UTR-3UTR	ENST00000452423	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5UTR-3UTR	ENST00000452423	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5UTR-3UTR	ENST00000452423	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5UTR-intron	ENST00000452423	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5UTR-intron	ENST00000452423	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
5UTR-intron	ENST00000452423	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000442977	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000442977	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000442977	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000442977	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000442977	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000442977	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000521963	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000521963	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000521963	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000521963	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000521963	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000521963	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000312046	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000312046	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000312046	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000312046	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000312046	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000312046	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000449762	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000449762	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000449762	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000449762	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000449762	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000449762	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000297447	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000297447	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000297447	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000297447	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000297447	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000297447	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000521592	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000521592	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000521592	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000521592	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000521592	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000521592	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000497705	ENST00000395996		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000497705	ENST00000358544		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-3UTR	ENST00000497705	ENST00000357162		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000497705	ENST00000355155		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000497705	ENST00000441350		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
intron-intron	ENST00000497705	ENST00000521932		TCGA	RV	HNSC	TCGA-CN-A63W-01A	OXR1	chr8	107371864	+	VPS13B	chr8	100711753	+
In-frame	ENST00000355852	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000355852	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000355852	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
Frame-shit	ENST00000322099	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000322099	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000322099	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
Frame-shit	ENST00000461554	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000461554	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000461554	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
Frame-shit	ENST00000484633	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000484633	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000484633	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000395013	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000395013	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000395013	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
intron-3CDS	ENST00000395014	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
intron-intron	ENST00000395014	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
intron-intron	ENST00000395014	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
In-frame	ENST00000428823	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000428823	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000428823	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
In-frame	ENST00000471622	ENST00000296484		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000471622	ENST00000394970		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
5CDS-intron	ENST00000471622	ENST00000474012		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	PCBP4	chr3	51995026	-	POC1A	chr3	52130728	-
3UTR-3CDS	ENST00000331563	ENST00000252244		TCGA	RV	HNSC	TCGA-CQ-A4CE-01A	PKP3	chr11	404681	+	KRT1	chr12	53074191	-
intron-3CDS	ENST00000530695	ENST00000252244		TCGA	RV	HNSC	TCGA-CQ-A4CE-01A	PKP3	chr11	404681	+	KRT1	chr12	53074191	-
Frame-shit	ENST00000369110	ENST00000368226		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000369110	ENST00000368227		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000369110	ENST00000532331		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000369110	ENST00000368213		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000369110	ENST00000368210		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000369110	ENST00000368215		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000369110	ENST00000368207		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000369110	ENST00000524481		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
5CDS-5UTR	ENST00000369110	ENST00000525459		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	PREP	chr6	105729621	-	PTPRK	chr6	128643455	-
Frame-shit	ENST00000540871	ENST00000396472		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
Frame-shit	ENST00000540871	ENST00000382406		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
Frame-shit	ENST00000540871	ENST00000280987		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
5CDS-intron	ENST00000540871	ENST00000554052		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000261479	ENST00000396472		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000261479	ENST00000382406		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000261479	ENST00000280987		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000261479	ENST00000554052		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000553809	ENST00000396472		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000553809	ENST00000382406		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000553809	ENST00000280987		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000553809	ENST00000554052		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000555764	ENST00000396472		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000555764	ENST00000382406		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000555764	ENST00000280987		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000555764	ENST00000554052		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000556506	ENST00000396472		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000556506	ENST00000382406		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000556506	ENST00000280987		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000556506	ENST00000554052		TCGA	RV	HNSC	TCGA-CN-A497-01A	PSMA6	chr14	35747924	+	FAM177A1	chr14	35522484	+
5UTR-intron	ENST00000367689	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-intron	ENST00000367689	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-3UTR	ENST00000367689	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-intron	ENST00000357444	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-intron	ENST00000357444	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-3UTR	ENST00000357444	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-intron	ENST00000251507	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-intron	ENST00000251507	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
5UTR-3UTR	ENST00000251507	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000325589	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000325589	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000325589	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000367686	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000367686	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000367686	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000367687	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000367687	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000367687	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000347255	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000347255	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000347255	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000489615	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000489615	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000489615	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000478442	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000478442	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000478442	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000486220	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000486220	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000486220	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000392064	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000392064	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000392064	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000367688	ENST00000546011		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-intron	ENST00000367688	ENST00000209884		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
intron-3UTR	ENST00000367688	ENST00000493170		TCGA	RV	HNSC	TCGA-CN-5361-01A	RABGAP1L	chr1	174128795	+	KLHL20	chr1	173702852	+
Frame-shit	ENST00000430083	ENST00000226279		TCGA	RV	HNSC	TCGA-CN-4730-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
intron-3CDS	ENST00000328444	ENST00000226279		TCGA	RV	HNSC	TCGA-CN-4730-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
Frame-shit	ENST00000368732	ENST00000369981		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368732	ENST00000369985		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368732	ENST00000369977		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368732	ENST00000369975		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
5CDS-intron	ENST00000368732	ENST00000462633		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368733	ENST00000369981		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368733	ENST00000369985		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368733	ENST00000369977		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000368733	ENST00000369975		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
5CDS-intron	ENST00000368733	ENST00000462633		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000477801	ENST00000369981		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000477801	ENST00000369985		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000477801	ENST00000369977		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000477801	ENST00000369975		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
intron-intron	ENST00000477801	ENST00000462633		TCGA	RV	HNSC	TCGA-CV-7183-01A	S100A8	chr1	153362508	-	MYO6	chr6	76595721	+
5UTR-3CDS	ENST00000379958	ENST00000305866		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
5UTR-5UTR	ENST00000379958	ENST00000541136		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
5UTR-5UTR	ENST00000379958	ENST00000544910		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
5UTR-5UTR	ENST00000379958	ENST00000535481		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
5UTR-5UTR	ENST00000379958	ENST00000317751		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
5UTR-5UTR	ENST00000379958	ENST00000251739		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
5UTR-intron	ENST00000379958	ENST00000474412		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	SAMD9	chr7	92744108	-	CCDC132	chr7	92869179	+
Frame-shit	ENST00000355875	ENST00000366542		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000355875	ENST00000366543		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000355875	ENST00000366544		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000355875	ENST00000468254		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000355875	ENST00000481987		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000355875	ENST00000490813		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000366541	ENST00000366542		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000366541	ENST00000366543		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000366541	ENST00000366544		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000366541	ENST00000468254		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000366541	ENST00000481987		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000366541	ENST00000490813		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5UTR-3CDS	ENST00000343783	ENST00000366542		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5UTR-3CDS	ENST00000343783	ENST00000366543		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5UTR-3CDS	ENST00000343783	ENST00000366544		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5UTR-intron	ENST00000343783	ENST00000468254		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5UTR-intron	ENST00000343783	ENST00000481987		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5UTR-intron	ENST00000343783	ENST00000490813		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000391846	ENST00000366542		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000391846	ENST00000366543		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
Frame-shit	ENST00000391846	ENST00000366544		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000391846	ENST00000468254		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000391846	ENST00000481987		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
5CDS-intron	ENST00000391846	ENST00000490813		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-3CDS	ENST00000496361	ENST00000366542		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-3CDS	ENST00000496361	ENST00000366543		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-3CDS	ENST00000496361	ENST00000366544		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-intron	ENST00000496361	ENST00000468254		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-intron	ENST00000496361	ENST00000481987		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-intron	ENST00000496361	ENST00000490813		TCGA	RV	HNSC	TCGA-BA-4074-01A	SDCCAG8	chr1	243419542	+	CEP170	chr1	243336148	-
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
Frame-shit	ENST00000369774	ENST00000369764		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
Frame-shit	ENST00000355946	ENST00000369764		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	HNSC	TCGA-CV-5976-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105659981	-
Frame-shit	ENST00000342228	ENST00000284268		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000342228	ENST00000535119		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000342228	ENST00000503939		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
Frame-shit	ENST00000520262	ENST00000284268		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000520262	ENST00000535119		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000520262	ENST00000503939		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
Frame-shit	ENST00000520179	ENST00000284268		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000520179	ENST00000535119		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000520179	ENST00000503939		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
intron-3CDS	ENST00000523340	ENST00000284268		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
intron-intron	ENST00000523340	ENST00000535119		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
intron-intron	ENST00000523340	ENST00000503939		TCGA	RV	HNSC	TCGA-CV-7099-01A	SLC20A2	chr8	42286276	-	ANKH	chr5	14769300	-
In-frame	ENST00000373371	ENST00000435213		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
In-frame	ENST00000373371	ENST00000314904		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
In-frame	ENST00000373371	ENST00000373387		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5CDS-intron	ENST00000373371	ENST00000496711		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5UTR-3CDS	ENST00000373352	ENST00000435213		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5UTR-3CDS	ENST00000373352	ENST00000314904		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5UTR-3CDS	ENST00000373352	ENST00000373387		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5UTR-intron	ENST00000373352	ENST00000496711		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
In-frame	ENST00000373360	ENST00000435213		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
In-frame	ENST00000373360	ENST00000314904		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
In-frame	ENST00000373360	ENST00000373387		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5CDS-intron	ENST00000373360	ENST00000496711		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
intron-3CDS	ENST00000485806	ENST00000435213		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
intron-3CDS	ENST00000485806	ENST00000314904		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
intron-3CDS	ENST00000485806	ENST00000373387		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
intron-intron	ENST00000485806	ENST00000496711		TCGA	RV	HNSC	TCGA-CR-6478-01A	SLC2A8	chr9	130162285	+	GARNL3	chr9	130116125	+
5UTR-3CDS	ENST00000398637	ENST00000573500		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000398637	ENST00000576221		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000398637	ENST00000268896		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000398637	ENST00000576183		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-5UTR	ENST00000398637	ENST00000325214		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-3CDS	ENST00000549049	ENST00000573500		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000549049	ENST00000576221		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000549049	ENST00000268896		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000549049	ENST00000576183		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-5UTR	ENST00000549049	ENST00000325214		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-3CDS	ENST00000439706	ENST00000573500		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000439706	ENST00000576221		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000439706	ENST00000268896		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-intron	ENST00000439706	ENST00000576183		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-5UTR	ENST00000439706	ENST00000325214		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-3CDS	ENST00000546893	ENST00000573500		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000546893	ENST00000576221		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000546893	ENST00000268896		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000546893	ENST00000576183		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-5UTR	ENST00000546893	ENST00000325214		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-3CDS	ENST00000549633	ENST00000573500		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000549633	ENST00000576221		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000549633	ENST00000268896		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000549633	ENST00000576183		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-5UTR	ENST00000549633	ENST00000325214		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-3CDS	ENST00000552197	ENST00000573500		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000552197	ENST00000576221		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000552197	ENST00000268896		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-intron	ENST00000552197	ENST00000576183		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
intron-5UTR	ENST00000552197	ENST00000325214		TCGA	RV	HNSC	TCGA-CQ-A4C9-01A	SLC38A1	chr12	46662309	-	PCTP	chr17	53844696	+
5UTR-3CDS	ENST00000299977	ENST00000536708		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-3CDS	ENST00000299977	ENST00000338399		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-intron	ENST00000299977	ENST00000578663		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-3CDS	ENST00000542451	ENST00000536708		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-3CDS	ENST00000542451	ENST00000338399		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-intron	ENST00000542451	ENST00000578663		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-3CDS	ENST00000592325	ENST00000536708		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-3CDS	ENST00000592325	ENST00000338399		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
5UTR-intron	ENST00000592325	ENST00000578663		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	SLFN5	chr17	33570162	+	CDK5RAP3	chr17	46050885	+
Frame-shit	ENST00000263694	ENST00000356093		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000398863		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000343067		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000349460		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000373800		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000347529		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000373798		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
Frame-shit	ENST00000263694	ENST00000373797		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
5CDS-intron	ENST00000263694	ENST00000460378		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000356093		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000398863		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000343067		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000349460		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000373800		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000347529		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000373798		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000489853	ENST00000373797		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-intron	ENST00000489853	ENST00000460378		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000356093		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000398863		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000343067		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000349460		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000373800		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000347529		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000373798		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000373720	ENST00000373797		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-intron	ENST00000373720	ENST00000460378		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000356093		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000398863		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000343067		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000349460		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000373800		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000347529		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000373798		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
In-frame	ENST00000446633	ENST00000373797		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
5CDS-intron	ENST00000446633	ENST00000460378		TCGA	RV	HNSC	TCGA-DQ-7591-01A	SNRNP40	chr1	31762101	-	EPB41	chr1	29365766	+
intron-3CDS	ENST00000300150	ENST00000531066		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
intron-3CDS	ENST00000300150	ENST00000355661		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
intron-3CDS	ENST00000300150	ENST00000448080		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
intron-intron	ENST00000300150	ENST00000532079		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
intron-intron	ENST00000300150	ENST00000332954		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000337979	ENST00000531066		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000337979	ENST00000355661		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000337979	ENST00000448080		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5CDS-intron	ENST00000337979	ENST00000532079		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5CDS-intron	ENST00000337979	ENST00000332954		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000535361	ENST00000531066		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000535361	ENST00000355661		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000535361	ENST00000448080		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5CDS-intron	ENST00000535361	ENST00000532079		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5CDS-intron	ENST00000535361	ENST00000332954		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5UTR-3CDS	ENST00000437946	ENST00000531066		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5UTR-3CDS	ENST00000437946	ENST00000355661		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5UTR-3CDS	ENST00000437946	ENST00000448080		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5UTR-intron	ENST00000437946	ENST00000532079		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5UTR-intron	ENST00000437946	ENST00000332954		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000529177	ENST00000531066		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000529177	ENST00000355661		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
Frame-shit	ENST00000529177	ENST00000448080		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5CDS-intron	ENST00000529177	ENST00000532079		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
5CDS-intron	ENST00000529177	ENST00000332954		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	STX3	chr11	59523108	+	PLEKHA7	chr11	16816261	-
In-frame	ENST00000344949	ENST00000471714		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
In-frame	ENST00000344949	ENST00000284322		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
In-frame	ENST00000344949	ENST00000495063		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
5CDS-intron	ENST00000344949	ENST00000383691		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
5CDS-5UTR	ENST00000344949	ENST00000532144		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
In-frame	ENST00000394144	ENST00000471714		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
In-frame	ENST00000394144	ENST00000284322		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
In-frame	ENST00000394144	ENST00000495063		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
5CDS-intron	ENST00000394144	ENST00000383691		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
5CDS-5UTR	ENST00000394144	ENST00000532144		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
3UTR-3CDS	ENST00000486274	ENST00000471714		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
3UTR-3CDS	ENST00000486274	ENST00000284322		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
3UTR-3CDS	ENST00000486274	ENST00000495063		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
3UTR-intron	ENST00000486274	ENST00000383691		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
3UTR-5UTR	ENST00000486274	ENST00000532144		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
Frame-shit	ENST00000475134	ENST00000471714		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
Frame-shit	ENST00000475134	ENST00000284322		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
Frame-shit	ENST00000475134	ENST00000495063		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
5CDS-intron	ENST00000475134	ENST00000383691		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
5CDS-5UTR	ENST00000475134	ENST00000532144		TCGA	RV	HNSC	TCGA-DQ-7589-01A	TBC1D23	chr3	100000691	+	ABI3BP	chr3	100645325	-
Frame-shit	ENST00000406644	ENST00000407071		TCGA	RV	HNSC	TCGA-CR-7388-01A	TEF	chr22	41763603	+	KIF26B	chr1	245704069	+
Frame-shit	ENST00000406644	ENST00000366518		TCGA	RV	HNSC	TCGA-CR-7388-01A	TEF	chr22	41763603	+	KIF26B	chr1	245704069	+
5CDS-intron	ENST00000406644	ENST00000479506		TCGA	RV	HNSC	TCGA-CR-7388-01A	TEF	chr22	41763603	+	KIF26B	chr1	245704069	+
intron-3CDS	ENST00000266304	ENST00000407071		TCGA	RV	HNSC	TCGA-CR-7388-01A	TEF	chr22	41763603	+	KIF26B	chr1	245704069	+
intron-3CDS	ENST00000266304	ENST00000366518		TCGA	RV	HNSC	TCGA-CR-7388-01A	TEF	chr22	41763603	+	KIF26B	chr1	245704069	+
intron-intron	ENST00000266304	ENST00000479506		TCGA	RV	HNSC	TCGA-CR-7388-01A	TEF	chr22	41763603	+	KIF26B	chr1	245704069	+
Frame-shit	ENST00000374692	ENST00000357685		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374692	ENST00000393032		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374692	ENST00000361053		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374692	ENST00000438022		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374692	ENST00000526088		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
5CDS-5UTR	ENST00000374692	ENST00000532593		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
5CDS-5UTR	ENST00000374692	ENST00000531169		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374688	ENST00000357685		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374688	ENST00000393032		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374688	ENST00000361053		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374688	ENST00000438022		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
Frame-shit	ENST00000374688	ENST00000526088		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
5CDS-5UTR	ENST00000374688	ENST00000532593		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
5CDS-5UTR	ENST00000374688	ENST00000531169		TCGA	RV	HNSC	TCGA-P3-A5Q6-01A	TMEM38B	chr9	108510471	+	BCO2	chr11	112064197	+
5CDS-3UTR	ENST00000291574	ENST00000477916		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	TRAPPC10	chr21	45432441	+	MDS2	chr1	23966170	+
5CDS-3UTR	ENST00000291574	ENST00000374555		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	TRAPPC10	chr21	45432441	+	MDS2	chr1	23966170	+
5CDS-3UTR	ENST00000380221	ENST00000477916		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	TRAPPC10	chr21	45432441	+	MDS2	chr1	23966170	+
5CDS-3UTR	ENST00000380221	ENST00000374555		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	TRAPPC10	chr21	45432441	+	MDS2	chr1	23966170	+
intron-3UTR	ENST00000483973	ENST00000477916		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	TRAPPC10	chr21	45432441	+	MDS2	chr1	23966170	+
intron-3UTR	ENST00000483973	ENST00000374555		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	TRAPPC10	chr21	45432441	+	MDS2	chr1	23966170	+
Frame-shit	ENST00000319380	ENST00000269033		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
Frame-shit	ENST00000319380	ENST00000540801		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
5CDS-intron	ENST00000319380	ENST00000324677		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
5CDS-intron	ENST00000319380	ENST00000582084		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
5CDS-intron	ENST00000319380	ENST00000590153		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
5CDS-intron	ENST00000319380	ENST00000579954		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
intron-3CDS	ENST00000587581	ENST00000269033		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
intron-3CDS	ENST00000587581	ENST00000540801		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
intron-intron	ENST00000587581	ENST00000324677		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
intron-intron	ENST00000587581	ENST00000582084		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
intron-intron	ENST00000587581	ENST00000590153		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
intron-intron	ENST00000587581	ENST00000579954		TCGA	RV	HNSC	TCGA-F7-8298-01A	UBE2O	chr17	74448807	-	SSH2	chr17	27963820	-
Frame-shit	ENST00000261708	ENST00000589222		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
Frame-shit	ENST00000261708	ENST00000407086		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
Frame-shit	ENST00000261708	ENST00000390652		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
Frame-shit	ENST00000261708	ENST00000408905		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
Frame-shit	ENST00000261708	ENST00000588462		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
Frame-shit	ENST00000261708	ENST00000585744		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
Frame-shit	ENST00000261708	ENST00000588874		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5CDS-intron	ENST00000261708	ENST00000585812		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000589222		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000407086		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000390652		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000408905		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000588462		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000585744		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-3CDS	ENST00000490218	ENST00000588874		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
5UTR-intron	ENST00000490218	ENST00000585812		TCGA	RV	HNSC	TCGA-F7-A50I-01A	UTP6	chr17	30214255	-	BCAS3	chr17	59112027	+
In-frame	ENST00000406606	ENST00000303407		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000406606	ENST00000473349		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000406606	ENST00000371834		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000406606	ENST00000357885		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
In-frame	ENST00000371850	ENST00000303407		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000371850	ENST00000473349		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000371850	ENST00000371834		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000371850	ENST00000357885		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
In-frame	ENST00000371851	ENST00000303407		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000371851	ENST00000473349		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000371851	ENST00000371834		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-intron	ENST00000371851	ENST00000357885		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5UTR-3CDS	ENST00000486113	ENST00000303407		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5UTR-intron	ENST00000486113	ENST00000473349		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5UTR-intron	ENST00000486113	ENST00000371834		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5UTR-intron	ENST00000486113	ENST00000357885		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	VAV2	chr9	136857197	-	BRD3	chr9	136910543	-
5CDS-5UTR	ENST00000432306	ENST00000354655		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-3UTR	ENST00000432306	ENST00000479936		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000432306	ENST00000393081		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000432306	ENST00000433418		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000432306	ENST00000356116		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000432306	ENST00000354273		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-intron	ENST00000432306	ENST00000369410		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000393077	ENST00000354655		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-3UTR	ENST00000393077	ENST00000479936		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000393077	ENST00000393081		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000393077	ENST00000433418		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000393077	ENST00000356116		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-5UTR	ENST00000393077	ENST00000354273		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5CDS-intron	ENST00000393077	ENST00000369410		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-5UTR	ENST00000483122	ENST00000354655		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-3UTR	ENST00000483122	ENST00000479936		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-5UTR	ENST00000483122	ENST00000393081		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-5UTR	ENST00000483122	ENST00000433418		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-5UTR	ENST00000483122	ENST00000356116		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-5UTR	ENST00000483122	ENST00000354273		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
intron-intron	ENST00000483122	ENST00000369410		TCGA	RV	HNSC	TCGA-F7-A623-01A	VTI1A	chr10	114224416	+	ACSL5	chr10	114154676	+
5UTR-3CDS	ENST00000380916	ENST00000380110		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000380916	ENST00000223951		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000380916	ENST00000544538		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000380916	ENST00000397312		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000380916	ENST00000380117		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-intron	ENST00000380916	ENST00000462649		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000497966	ENST00000380110		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000497966	ENST00000223951		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000497966	ENST00000544538		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000497966	ENST00000397312		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-3CDS	ENST00000497966	ENST00000380117		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
5UTR-intron	ENST00000497966	ENST00000462649		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ZDHHC21	chr9	14690335	-	ELAVL2	chr9	23731123	-
intron-3CDS	ENST00000586458	ENST00000324675		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	ZNF529	chr19	37063235	-	FAM187B	chr19	35716115	-
5UTR-3CDS	ENST00000334116	ENST00000324675		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	ZNF529	chr19	37063235	-	FAM187B	chr19	35716115	-
Frame-shit	ENST00000591340	ENST00000324675		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	ZNF529	chr19	37063235	-	FAM187B	chr19	35716115	-
5UTR-3CDS	ENST00000344275	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000344275	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000344275	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000344275	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-intron	ENST00000344275	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000442833	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000442833	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000442833	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000442833	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-intron	ENST00000442833	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000280560	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000280560	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000280560	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000280560	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-intron	ENST00000280560	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000540285	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000540285	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000540285	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000540285	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-intron	ENST00000540285	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000346530	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000346530	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000346530	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-3CDS	ENST00000346530	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
5UTR-intron	ENST00000346530	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000392439	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000392439	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000392439	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000392439	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-intron	ENST00000392439	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000442028	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000442028	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000442028	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000442028	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-intron	ENST00000442028	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000542678	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000542678	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000542678	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000542678	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-intron	ENST00000542678	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000541983	ENST00000302349		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000541983	ENST00000541076		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000541983	ENST00000606320		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-3CDS	ENST00000541983	ENST00000392425		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
intron-intron	ENST00000541983	ENST00000539639		TCGA	RV	HNSC	TCGA-CR-6482-01A	ABCB9	chr12	123450834	-	MPHOSPH9	chr12	123651336	-
Frame-shit	ENST00000209665	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-6940-01A	ADH7	chr4	100333418	-	CXCR5	chr11	118754475	+
Frame-shit	ENST00000437033	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-6940-01A	ADH7	chr4	100333418	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000482593	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-6940-01A	ADH7	chr4	100333418	-	CXCR5	chr11	118754475	+
intron-3CDS	ENST00000476959	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-6940-01A	ADH7	chr4	100333418	-	CXCR5	chr11	118754475	+
In-frame	ENST00000285518	ENST00000399881		TCGA	RV	HNSC	TCGA-CV-7446-01A	AGPAT5	chr8	6599272	+	KCNU1	chr8	36721922	+
5CDS-intron	ENST00000285518	ENST00000518904		TCGA	RV	HNSC	TCGA-CV-7446-01A	AGPAT5	chr8	6599272	+	KCNU1	chr8	36721922	+
3UTR-3CDS	ENST00000530716	ENST00000399881		TCGA	RV	HNSC	TCGA-CV-7446-01A	AGPAT5	chr8	6599272	+	KCNU1	chr8	36721922	+
3UTR-intron	ENST00000530716	ENST00000518904		TCGA	RV	HNSC	TCGA-CV-7446-01A	AGPAT5	chr8	6599272	+	KCNU1	chr8	36721922	+
Frame-shit	ENST00000299626	ENST00000294312		TCGA	RV	HNSC	TCGA-CQ-6224-01A	ALG8	chr11	77835067	-	FGF19	chr11	69514344	-
Frame-shit	ENST00000376156	ENST00000294312		TCGA	RV	HNSC	TCGA-CQ-6224-01A	ALG8	chr11	77835067	-	FGF19	chr11	69514344	-
intron-3CDS	ENST00000532552	ENST00000294312		TCGA	RV	HNSC	TCGA-CQ-6224-01A	ALG8	chr11	77835067	-	FGF19	chr11	69514344	-
intron-3CDS	ENST00000368315	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000368315	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-intron	ENST00000368315	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000313695	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000313695	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-intron	ENST00000313695	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
Frame-shit	ENST00000361247	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
Frame-shit	ENST00000361247	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
5CDS-intron	ENST00000361247	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000368316	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000368316	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-intron	ENST00000368316	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000462460	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000462460	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-intron	ENST00000462460	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000477754	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000477754	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
intron-intron	ENST00000477754	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
Frame-shit	ENST00000313667	ENST00000361813		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
Frame-shit	ENST00000313667	ENST00000368267		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
5CDS-intron	ENST00000313667	ENST00000489907		TCGA	RV	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155948156	-	SMG5	chr1	156244477	-
5UTR-3CDS	ENST00000273859	ENST00000295454		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
5UTR-5UTR	ENST00000273859	ENST00000538619		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
5UTR-3UTR	ENST00000273859	ENST00000509366		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
5UTR-3CDS	ENST00000504445	ENST00000295454		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
5UTR-5UTR	ENST00000504445	ENST00000538619		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
5UTR-3UTR	ENST00000504445	ENST00000509366		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
intron-3CDS	ENST00000512393	ENST00000295454		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
intron-5UTR	ENST00000512393	ENST00000538619		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
intron-3UTR	ENST00000512393	ENST00000509366		TCGA	RV	HNSC	TCGA-CV-6948-01A	ATP10D	chr4	47487536	+	GABRB1	chr4	47033931	+
intron-3CDS	ENST00000306448	ENST00000327783		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000389125		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000399913		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000399914		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000535441		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000389124		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000399907		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000399909		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000306448	ENST00000309434		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-5UTR	ENST00000306448	ENST00000472429		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000327783		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000389125		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000399913		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000399914		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000535441		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000389124		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000399907		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000399909		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-3CDS	ENST00000522587	ENST00000309434		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
5UTR-5UTR	ENST00000522587	ENST00000472429		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000327783		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000389125		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000399913		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000399914		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000535441		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000389124		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000399907		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000399909		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-3CDS	ENST00000505245	ENST00000309434		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
intron-5UTR	ENST00000505245	ENST00000472429		TCGA	RV	HNSC	TCGA-CN-6992-01A	ATP6V1E2	chr2	46762952	-	GRIK1	chr21	31015289	-
In-frame	ENST00000314100	ENST00000354190		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000314100	ENST00000398492		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000314100	ENST00000227214		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000314100	ENST00000398494		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000314100	ENST00000543085		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000314100	ENST00000544532		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000314100	ENST00000535129		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000481247	ENST00000354190		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000481247	ENST00000398492		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000481247	ENST00000227214		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000481247	ENST00000398494		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000481247	ENST00000543085		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000481247	ENST00000544532		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000481247	ENST00000535129		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000419706	ENST00000354190		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000419706	ENST00000398492		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000419706	ENST00000227214		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000419706	ENST00000398494		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
In-frame	ENST00000419706	ENST00000543085		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000419706	ENST00000544532		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000419706	ENST00000535129		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000408958	ENST00000354190		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000408958	ENST00000398492		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000408958	ENST00000227214		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000408958	ENST00000398494		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000408958	ENST00000543085		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000408958	ENST00000544532		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000408958	ENST00000535129		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000403056	ENST00000354190		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000403056	ENST00000398492		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000403056	ENST00000227214		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000403056	ENST00000398494		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000403056	ENST00000543085		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000403056	ENST00000544532		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
5CDS-intron	ENST00000403056	ENST00000535129		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	BTBD9	chr6	38545376	-	PLEKHB1	chr11	73371798	+
Frame-shit	ENST00000566621	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000566621	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000566621	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000566621	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000566621	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000566621	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000566621	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000437989	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000437989	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000437989	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000437989	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000437989	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000437989	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000437989	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000569302	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000569302	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000569302	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000569302	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000569302	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000569302	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000569302	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000567389	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000567389	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000567389	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000567389	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000567389	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000567389	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000567389	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000562877	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000562877	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000562877	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000562877	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000562877	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000562877	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000562877	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000338183	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000338183	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000338183	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000338183	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000338183	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000338183	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
5CDS-3UTR	ENST00000338183	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3CDS	ENST00000565792	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3CDS	ENST00000565792	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000565792	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000565792	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000565792	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000565792	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000565792	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3CDS	ENST00000562489	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3CDS	ENST00000562489	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000562489	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000562489	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000562489	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000562489	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000562489	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3CDS	ENST00000563167	ENST00000484457		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3CDS	ENST00000563167	ENST00000538892		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000563167	ENST00000283627		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000563167	ENST00000538181		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000563167	ENST00000446237		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000563167	ENST00000507198		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
intron-3UTR	ENST00000563167	ENST00000542085		TCGA	RV	HNSC	TCGA-F7-A623-01A	C15orf41	chr15	36950106	+	FBXL2	chr3	33425481	+
Frame-shit	ENST00000235307	ENST00000258341		TCGA	RV	HNSC	TCGA-CV-7263-01A	C1orf21	chr1	184446737	+	LAMC1	chr1	183085712	+
5CDS-intron	ENST00000235307	ENST00000466964		TCGA	RV	HNSC	TCGA-CV-7263-01A	C1orf21	chr1	184446737	+	LAMC1	chr1	183085712	+
intron-3CDS	ENST00000367514	ENST00000258341		TCGA	RV	HNSC	TCGA-CV-7263-01A	C1orf21	chr1	184446737	+	LAMC1	chr1	183085712	+
intron-intron	ENST00000367514	ENST00000466964		TCGA	RV	HNSC	TCGA-CV-7263-01A	C1orf21	chr1	184446737	+	LAMC1	chr1	183085712	+
intron-5UTR	ENST00000277198	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000277198	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000277198	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000277198	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000277198	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000297979	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000297979	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000297979	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000297979	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000297979	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000375315	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000375315	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000375315	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000375315	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000375315	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000395357	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000395357	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000395357	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000395357	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000395357	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000425634	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000425634	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000425634	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000425634	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000425634	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000433691	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000433691	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000433691	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000433691	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000433691	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000473778	ENST00000577830		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000473778	ENST00000407144		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000473778	ENST00000360238		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000473778	ENST00000577840		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000473778	ENST00000578357		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97741709	+	CUEDC1	chr17	55963240	-
Frame-shit	ENST00000341502	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5CDS-intron	ENST00000341502	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-3CDS	ENST00000341749	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-intron	ENST00000341749	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-3CDS	ENST00000557038	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-intron	ENST00000557038	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-3CDS	ENST00000396165	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-intron	ENST00000396165	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
Frame-shit	ENST00000396158	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5CDS-intron	ENST00000396158	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
Frame-shit	ENST00000280083	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5CDS-intron	ENST00000280083	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5UTR-3CDS	ENST00000556148	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5UTR-intron	ENST00000556148	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
Frame-shit	ENST00000348007	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5CDS-intron	ENST00000348007	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-3CDS	ENST00000553352	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-intron	ENST00000553352	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-3CDS	ENST00000553383	ENST00000280082		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
intron-intron	ENST00000553383	ENST00000556784		TCGA	RV	HNSC	TCGA-CQ-5332-01A	CTAGE5	chr14	39736726	+	MIA2	chr14	39721952	+
5CDS-5UTR	ENST00000264010	ENST00000602377		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CTCF	chr16	67663436	+	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000264010	ENST00000268797		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CTCF	chr16	67663436	+	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000401394	ENST00000602377		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CTCF	chr16	67663436	+	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000401394	ENST00000268797		TCGA	RV	HNSC	TCGA-P3-A6T7-01A	CTCF	chr16	67663436	+	GFOD2	chr16	67719705	-
intron-intron	ENST00000373095	ENST00000371917		TCGA	RV	HNSC	TCGA-CV-A460-01A	FAM102A	chr9	130703160	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000373095	ENST00000493140		TCGA	RV	HNSC	TCGA-CV-A460-01A	FAM102A	chr9	130703160	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000373084	ENST00000371917		TCGA	RV	HNSC	TCGA-CV-A460-01A	FAM102A	chr9	130703160	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000373084	ENST00000493140		TCGA	RV	HNSC	TCGA-CV-A460-01A	FAM102A	chr9	130703160	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000300434	ENST00000371917		TCGA	RV	HNSC	TCGA-CV-A460-01A	FAM102A	chr9	130703160	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000300434	ENST00000493140		TCGA	RV	HNSC	TCGA-CV-A460-01A	FAM102A	chr9	130703160	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000313949	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000313949	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371098	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371075	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371100	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371099	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371102	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000464624	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000306120	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371095	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000371085	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000354359	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000265620	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
5CDS-intron	ENST00000306090	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000378482		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000422612		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000545599		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000286824		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
intron-intron	ENST00000371081	ENST00000488893		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GNAS	chr20	57486241	+	TSPAN7	chrX	38505515	+
Frame-shit	ENST00000247815	ENST00000398016		TCGA	RV	HNSC	TCGA-DQ-7594-01A	HELB	chr12	66704388	+	GRIP1	chr12	66773216	-
Frame-shit	ENST00000247815	ENST00000359742		TCGA	RV	HNSC	TCGA-DQ-7594-01A	HELB	chr12	66704388	+	GRIP1	chr12	66773216	-
Frame-shit	ENST00000247815	ENST00000286445		TCGA	RV	HNSC	TCGA-DQ-7594-01A	HELB	chr12	66704388	+	GRIP1	chr12	66773216	-
5CDS-intron	ENST00000247815	ENST00000542021		TCGA	RV	HNSC	TCGA-DQ-7594-01A	HELB	chr12	66704388	+	GRIP1	chr12	66773216	-
Frame-shit	ENST00000371378	ENST00000257177		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
Frame-shit	ENST00000371378	ENST00000371544		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-5UTR	ENST00000371378	ENST00000371541		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-intron	ENST00000371378	ENST00000355809		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
Frame-shit	ENST00000194214	ENST00000257177		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
Frame-shit	ENST00000194214	ENST00000371544		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-5UTR	ENST00000194214	ENST00000371541		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-intron	ENST00000194214	ENST00000355809		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
Frame-shit	ENST00000371377	ENST00000257177		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
Frame-shit	ENST00000371377	ENST00000371544		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-5UTR	ENST00000371377	ENST00000371541		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-intron	ENST00000371377	ENST00000355809		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
intron-3CDS	ENST00000489675	ENST00000257177		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
intron-3CDS	ENST00000489675	ENST00000371544		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
intron-5UTR	ENST00000489675	ENST00000371541		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
intron-intron	ENST00000489675	ENST00000355809		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
In-frame	ENST00000371376	ENST00000257177		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
In-frame	ENST00000371376	ENST00000371544		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-5UTR	ENST00000371376	ENST00000371541		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
5CDS-intron	ENST00000371376	ENST00000355809		TCGA	RV	HNSC	TCGA-CV-5970-01A	HSPB11	chr1	54405658	-	ZCCHC11	chr1	52962855	-
3UTR-3CDS	ENST00000484501	ENST00000360284		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-3CDS	ENST00000484501	ENST00000545748		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-3CDS	ENST00000484501	ENST00000550082		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-3UTR	ENST00000484501	ENST00000547206		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-5UTR	ENST00000484501	ENST00000243050		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-5UTR	ENST00000484501	ENST00000394825		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-5UTR	ENST00000484501	ENST00000394824		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
3UTR-5UTR	ENST00000484501	ENST00000548232		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
In-frame	ENST00000329582	ENST00000360284		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
In-frame	ENST00000329582	ENST00000545748		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
In-frame	ENST00000329582	ENST00000550082		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5CDS-3UTR	ENST00000329582	ENST00000547206		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5CDS-5UTR	ENST00000329582	ENST00000243050		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5CDS-5UTR	ENST00000329582	ENST00000394825		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5CDS-5UTR	ENST00000329582	ENST00000394824		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5CDS-5UTR	ENST00000329582	ENST00000548232		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000309741	ENST00000360284		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000309741	ENST00000545748		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000309741	ENST00000550082		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000309741	ENST00000547206		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000309741	ENST00000243050		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000309741	ENST00000394825		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000309741	ENST00000394824		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000309741	ENST00000548232		TCGA	RV	HNSC	TCGA-BA-6871-01A	IL20RB	chr3	136677043	+	NR4A1	chr12	52448111	+
Frame-shit	ENST00000524189	ENST00000555449		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000524189	ENST00000331299		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000524189	ENST00000557611		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000521515	ENST00000555449		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000521515	ENST00000331299		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000521515	ENST00000557611		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000404075	ENST00000555449		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000404075	ENST00000331299		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000404075	ENST00000557611		TCGA	RV	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28950262	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	HNSC	TCGA-CR-7389-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	HNSC	TCGA-IQ-A61O-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000361566	ENST00000360325		TCGA	RV	HNSC	TCGA-CN-4739-01A	KRT19	chr17	39679869	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000361566	ENST00000538261		TCGA	RV	HNSC	TCGA-CN-4739-01A	KRT19	chr17	39679869	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000361566	ENST00000397317		TCGA	RV	HNSC	TCGA-CN-4739-01A	KRT19	chr17	39679869	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000361566	ENST00000571881		TCGA	RV	HNSC	TCGA-CN-4739-01A	KRT19	chr17	39679869	-	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000361566	ENST00000573745		TCGA	RV	HNSC	TCGA-CN-4739-01A	KRT19	chr17	39679869	-	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000330722	ENST00000267101		TCGA	RV	HNSC	TCGA-DQ-5624-01A	KRT6A	chr12	52880958	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000330722	ENST00000450146		TCGA	RV	HNSC	TCGA-DQ-5624-01A	KRT6A	chr12	52880958	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000330722	ENST00000415288		TCGA	RV	HNSC	TCGA-DQ-5624-01A	KRT6A	chr12	52880958	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000330722	ENST00000553131		TCGA	RV	HNSC	TCGA-DQ-5624-01A	KRT6A	chr12	52880958	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000330722	ENST00000411731		TCGA	RV	HNSC	TCGA-DQ-5624-01A	KRT6A	chr12	52880958	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000330722	ENST00000549832		TCGA	RV	HNSC	TCGA-DQ-5624-01A	KRT6A	chr12	52880958	-	ERBB3	chr12	56492035	+
5CDS-5UTR	ENST00000178640	ENST00000336787		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000178640	ENST00000396307		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000178640	ENST00000564609		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000178640	ENST00000569493		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-intron	ENST00000178640	ENST00000561545		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
3UTR-5UTR	ENST00000560591	ENST00000336787		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
3UTR-5UTR	ENST00000560591	ENST00000396307		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
3UTR-5UTR	ENST00000560591	ENST00000564609		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
3UTR-5UTR	ENST00000560591	ENST00000569493		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
3UTR-intron	ENST00000560591	ENST00000561545		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000395476	ENST00000336787		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000395476	ENST00000396307		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000395476	ENST00000564609		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000395476	ENST00000569493		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
5CDS-intron	ENST00000395476	ENST00000561545		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000354498	ENST00000336787		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000354498	ENST00000396307		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000354498	ENST00000564609		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000354498	ENST00000569493		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-intron	ENST00000354498	ENST00000561545		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000340972	ENST00000336787		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000340972	ENST00000396307		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000340972	ENST00000564609		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000340972	ENST00000569493		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
intron-intron	ENST00000340972	ENST00000561545		TCGA	RV	HNSC	TCGA-CR-7386-01A	MAP2K5	chr15	67835808	+	RAB27A	chr15	55527154	-
Frame-shit	ENST00000229795	ENST00000347528		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229795	ENST00000289734		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229795	ENST00000379758		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229795	ENST00000396942		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229795	ENST00000396945		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229795	ENST00000352337		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229795	ENST00000265709		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229795	ENST00000457297		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229795	ENST00000522231		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229795	ENST00000522543		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229795	ENST00000314214		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229795	ENST00000521407		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000347528		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000289734		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000379758		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000396942		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000396945		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000352337		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000229794	ENST00000265709		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229794	ENST00000457297		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229794	ENST00000522231		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229794	ENST00000522543		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229794	ENST00000314214		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000229794	ENST00000521407		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000347528		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000289734		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000379758		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000396942		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000396945		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000352337		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000468133	ENST00000265709		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000468133	ENST00000457297		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000468133	ENST00000522231		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000468133	ENST00000522543		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000468133	ENST00000314214		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000468133	ENST00000521407		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000347528		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000289734		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000379758		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000396942		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000396945		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000352337		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000310795	ENST00000265709		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000310795	ENST00000457297		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000310795	ENST00000522231		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000310795	ENST00000522543		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000310795	ENST00000314214		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000310795	ENST00000521407		TCGA	RV	HNSC	TCGA-F7-A50I-01A	MAPK14	chr6	35996050	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000407073	ENST00000535787		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
5UTR-intron	ENST00000407073	ENST00000241416		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
5UTR-intron	ENST00000407073	ENST00000404590		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
5UTR-intron	ENST00000407073	ENST00000495775		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000478804	ENST00000535787		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000478804	ENST00000241416		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000478804	ENST00000404590		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000478804	ENST00000495775		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000404807	ENST00000535787		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000404807	ENST00000241416		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000404807	ENST00000404590		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
intron-intron	ENST00000404807	ENST00000495775		TCGA	RV	HNSC	TCGA-CV-6938-01A	MBD5	chr2	148779253	+	ACVR2A	chr2	148653870	+
5CDS-intron	ENST00000372330	ENST00000367545		TCGA	RV	HNSC	TCGA-CR-7382-01A	MMP9	chr20	44645199	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000372330	ENST00000367526		TCGA	RV	HNSC	TCGA-CR-7382-01A	MMP9	chr20	44645199	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000372330	ENST00000480333		TCGA	RV	HNSC	TCGA-CR-7382-01A	MMP9	chr20	44645199	+	UTRN	chr6	144665237	+
5CDS-5UTR	ENST00000438925	ENST00000401998		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000438925	ENST00000361114		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000438925	ENST00000398761		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000438925	ENST00000418483		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000438925	ENST00000398763		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000438925	ENST00000604025		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370782	ENST00000401998		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370782	ENST00000361114		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370782	ENST00000398761		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000370782	ENST00000418483		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000370782	ENST00000398763		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000370782	ENST00000604025		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000327238	ENST00000401998		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000327238	ENST00000361114		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000327238	ENST00000398761		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000327238	ENST00000418483		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000327238	ENST00000398763		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000327238	ENST00000604025		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000327277	ENST00000401998		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000327277	ENST00000361114		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000327277	ENST00000398761		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5UTR-intron	ENST00000327277	ENST00000418483		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5UTR-intron	ENST00000327277	ENST00000398763		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000327277	ENST00000604025		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000355839	ENST00000401998		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000355839	ENST00000361114		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000355839	ENST00000398761		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000355839	ENST00000418483		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000355839	ENST00000398763		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000355839	ENST00000604025		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
intron-5UTR	ENST00000483626	ENST00000401998		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
intron-5UTR	ENST00000483626	ENST00000361114		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
intron-5UTR	ENST00000483626	ENST00000398761		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
intron-intron	ENST00000483626	ENST00000418483		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
intron-intron	ENST00000483626	ENST00000398763		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
intron-5UTR	ENST00000483626	ENST00000604025		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	MMS19	chr10	99258030	-	MICU1	chr10	74326552	-
5CDS-intron	ENST00000405201	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000405201	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000404621	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000404621	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000404121	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000404121	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000356219	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000356219	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000397355	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000397355	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
intron-intron	ENST00000429285	ENST00000484427		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
intron-intron	ENST00000429285	ENST00000371764		TCGA	RV	HNSC	TCGA-CR-5243-01A	NCOR2	chr12	124808962	-	DDX27	chr20	47849303	+
In-frame	ENST00000319481	ENST00000356711		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000319481	ENST00000251041		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000319481	ENST00000357550		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000319481	ENST00000457511		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000319481	ENST00000467639		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5UTR-3CDS	ENST00000399443	ENST00000356711		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000399443	ENST00000251041		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000399443	ENST00000357550		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000399443	ENST00000457511		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000399443	ENST00000467639		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
In-frame	ENST00000357041	ENST00000356711		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000357041	ENST00000251041		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000357041	ENST00000357550		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000357041	ENST00000457511		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000357041	ENST00000467639		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-3CDS	ENST00000399441	ENST00000356711		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000399441	ENST00000251041		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000399441	ENST00000357550		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000399441	ENST00000457511		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000399441	ENST00000467639		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-3CDS	ENST00000582618	ENST00000356711		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000582618	ENST00000251041		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000582618	ENST00000357550		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000582618	ENST00000457511		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
intron-intron	ENST00000582618	ENST00000467639		TCGA	RV	HNSC	TCGA-T3-A92M-01A	OSBPL1A	chr18	21819184	-	MYO16	chr13	109772718	+
In-frame	ENST00000355680	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000355680	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000355680	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000355680	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000355680	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397638	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397638	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397638	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397638	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000397638	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000291705	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000291705	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000291705	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000291705	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000291705	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000458387	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000458387	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000458387	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000458387	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000458387	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000451211	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000451211	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000451211	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000451211	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000451211	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397637	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397637	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397637	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000397637	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000397637	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000334494	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000334494	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000334494	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000334494	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000334494	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
Frame-shit	ENST00000397628	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
Frame-shit	ENST00000397628	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
Frame-shit	ENST00000397628	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
Frame-shit	ENST00000397628	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000397628	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000440086	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000440086	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000440086	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000440086	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000440086	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
3UTR-3CDS	ENST00000491389	ENST00000333781		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
3UTR-3CDS	ENST00000491389	ENST00000541890		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
3UTR-3CDS	ENST00000491389	ENST00000398753		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
3UTR-3CDS	ENST00000491389	ENST00000380708		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
3UTR-3UTR	ENST00000491389	ENST00000466787		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	PRMT2	chr21	48069651	+	WRB	chr21	40762624	+
In-frame	ENST00000262293	ENST00000322652		TCGA	RV	HNSC	TCGA-F7-8298-01A	PRR11	chr17	57275150	+	SUZ12	chr17	30315339	+
In-frame	ENST00000262293	ENST00000580398		TCGA	RV	HNSC	TCGA-F7-8298-01A	PRR11	chr17	57275150	+	SUZ12	chr17	30315339	+
Frame-shit	ENST00000291041	ENST00000230895		TCGA	RV	HNSC	TCGA-UF-A71A-06A	PSKH1	chr16	67943609	+	DAP	chr5	10683683	-
5CDS-intron	ENST00000291041	ENST00000432074		TCGA	RV	HNSC	TCGA-UF-A71A-06A	PSKH1	chr16	67943609	+	DAP	chr5	10683683	-
5CDS-intron	ENST00000291041	ENST00000510546		TCGA	RV	HNSC	TCGA-UF-A71A-06A	PSKH1	chr16	67943609	+	DAP	chr5	10683683	-
intron-3CDS	ENST00000575198	ENST00000230895		TCGA	RV	HNSC	TCGA-UF-A71A-06A	PSKH1	chr16	67943609	+	DAP	chr5	10683683	-
intron-intron	ENST00000575198	ENST00000432074		TCGA	RV	HNSC	TCGA-UF-A71A-06A	PSKH1	chr16	67943609	+	DAP	chr5	10683683	-
intron-intron	ENST00000575198	ENST00000510546		TCGA	RV	HNSC	TCGA-UF-A71A-06A	PSKH1	chr16	67943609	+	DAP	chr5	10683683	-
Frame-shit	ENST00000330852	ENST00000265404		TCGA	RV	HNSC	TCGA-QK-A8Z8-01A	RAB28	chr4	13462323	-	STAP1	chr4	68456602	+
Frame-shit	ENST00000330852	ENST00000396225		TCGA	RV	HNSC	TCGA-QK-A8Z8-01A	RAB28	chr4	13462323	-	STAP1	chr4	68456602	+
Frame-shit	ENST00000288723	ENST00000265404		TCGA	RV	HNSC	TCGA-QK-A8Z8-01A	RAB28	chr4	13462323	-	STAP1	chr4	68456602	+
Frame-shit	ENST00000288723	ENST00000396225		TCGA	RV	HNSC	TCGA-QK-A8Z8-01A	RAB28	chr4	13462323	-	STAP1	chr4	68456602	+
Frame-shit	ENST00000338176	ENST00000265404		TCGA	RV	HNSC	TCGA-QK-A8Z8-01A	RAB28	chr4	13462323	-	STAP1	chr4	68456602	+
Frame-shit	ENST00000338176	ENST00000396225		TCGA	RV	HNSC	TCGA-QK-A8Z8-01A	RAB28	chr4	13462323	-	STAP1	chr4	68456602	+
5CDS-intron	ENST00000372189	ENST00000357028		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372189	ENST00000292035		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372189	ENST00000474263		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372195	ENST00000357028		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372195	ENST00000292035		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372195	ENST00000474263		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372190	ENST00000357028		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372190	ENST00000292035		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372190	ENST00000474263		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
intron-intron	ENST00000481260	ENST00000357028		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
intron-intron	ENST00000481260	ENST00000292035		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
intron-intron	ENST00000481260	ENST00000474263		TCGA	RV	HNSC	TCGA-CV-A45W-01A	RAPGEF1	chr9	134497183	-	MED27	chr9	134769379	-
5CDS-5UTR	ENST00000355294	ENST00000367120		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
5CDS-5UTR	ENST00000355294	ENST00000537984		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
5CDS-3UTR	ENST00000355294	ENST00000463979		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
5CDS-5UTR	ENST00000367117	ENST00000367120		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
5CDS-5UTR	ENST00000367117	ENST00000537984		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
5CDS-3UTR	ENST00000367117	ENST00000463979		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
intron-5UTR	ENST00000304534	ENST00000367120		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
intron-5UTR	ENST00000304534	ENST00000537984		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
intron-3UTR	ENST00000304534	ENST00000463979		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
intron-5UTR	ENST00000491368	ENST00000367120		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
intron-5UTR	ENST00000491368	ENST00000537984		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
intron-3UTR	ENST00000491368	ENST00000463979		TCGA	RV	HNSC	TCGA-DQ-7591-01A	RASSF5	chr1	206711622	+	IKBKE	chr1	206644499	+
5UTR-3CDS	ENST00000398958	ENST00000373710		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000398958	ENST00000536859		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000398958	ENST00000373709		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000398958	ENST00000536384		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000398958	ENST00000491976		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000373710		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000536859		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000373709		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373833	ENST00000536384		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000373833	ENST00000491976		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000373710		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000536859		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000373709		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373832	ENST00000536384		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000373832	ENST00000491976		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000373710		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000536859		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000373709		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000373831	ENST00000536384		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000373831	ENST00000491976		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000373710		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000536859		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000373709		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000429051	ENST00000536384		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000429051	ENST00000491976		TCGA	RV	HNSC	TCGA-CR-6473-01A	RCC1	chr1	28834672	+	SERINC2	chr1	31905814	+
5CDS-intron	ENST00000541979	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000541979	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000541979	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000541979	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000541979	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000541979	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000541979	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000541979	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000541979	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000541979	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000541979	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000541979	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000465038	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000465038	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000465038	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000465038	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000465038	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000465038	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000352853	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000352853	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000352853	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000352853	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000352853	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000352853	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371438	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371438	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371438	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371438	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371438	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371438	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371436	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371436	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371436	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371436	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371436	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371436	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000576263	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000576263	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000576263	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000576263	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000576263	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000576263	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371432	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371432	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371432	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371432	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000371432	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000371432	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000359524	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000359524	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000359524	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000359524	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000359524	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-intron	ENST00000359524	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000341653		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000358402		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000555932		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000284165		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000358664		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000555419		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-5UTR	ENST00000483243	ENST00000557277		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-5UTR	ENST00000483243	ENST00000556979		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-5UTR	ENST00000483243	ENST00000555667		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-5UTR	ENST00000483243	ENST00000557746		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-5UTR	ENST00000483243	ENST00000556443		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
intron-intron	ENST00000483243	ENST00000246163		TCGA	RV	HNSC	TCGA-CN-5367-01A	RUNX2	chr6	45399756	+	MAX	chr14	65544754	-
5CDS-5UTR	ENST00000481739	ENST00000405995		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000481739	ENST00000357304		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000481739	ENST00000458550		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000481739	ENST00000372249		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000481739	ENST00000465931		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
3UTR-5UTR	ENST00000356384	ENST00000405995		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
3UTR-5UTR	ENST00000356384	ENST00000357304		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
3UTR-intron	ENST00000356384	ENST00000458550		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
3UTR-intron	ENST00000356384	ENST00000372249		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
3UTR-intron	ENST00000356384	ENST00000465931		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000540193	ENST00000405995		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-5UTR	ENST00000540193	ENST00000357304		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000540193	ENST00000458550		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000540193	ENST00000372249		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
5CDS-intron	ENST00000540193	ENST00000465931		TCGA	RV	HNSC	TCGA-D6-8569-01A	RXRA	chr9	137313651	+	PRRC2B	chr9	134305477	+
intron-intron	ENST00000368708	ENST00000518164		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000521291		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000396070		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000287038		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000523172		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000518164		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000521291		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000396070		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000287038		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000523172		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000518164		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000521291		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000396070		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000287038		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000523172		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000518164		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000521291		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000396070		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000287038		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000523172		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000518164		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000521291		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000396070		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000287038		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000523172		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000518164		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000521291		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000396070		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000287038		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000523172		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-5UTR	ENST00000538941	ENST00000388942		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
5CDS-intron	ENST00000538941	ENST00000559079		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
5CDS-5UTR	ENST00000563290	ENST00000388942		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
5CDS-intron	ENST00000563290	ENST00000559079		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
5CDS-5UTR	ENST00000324767	ENST00000388942		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
5CDS-intron	ENST00000324767	ENST00000559079		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
intron-5UTR	ENST00000562890	ENST00000388942		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
intron-intron	ENST00000562890	ENST00000559079		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	SCAPER	chr15	76696865	-	C15orf27	chr15	76426509	+
In-frame	ENST00000517913	ENST00000046794		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
5CDS-intron	ENST00000517913	ENST00000521416		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
In-frame	ENST00000435422	ENST00000046794		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
5CDS-intron	ENST00000435422	ENST00000521416		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
In-frame	ENST00000447401	ENST00000046794		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
5CDS-intron	ENST00000447401	ENST00000521416		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
In-frame	ENST00000337851	ENST00000046794		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
5CDS-intron	ENST00000337851	ENST00000521416		TCGA	RV	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169720376	-
intron-3CDS	ENST00000395347	ENST00000280772		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
intron-3CDS	ENST00000395347	ENST00000373827		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
intron-3CDS	ENST00000395347	ENST00000355288		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
intron-3CDS	ENST00000395347	ENST00000503366		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
intron-intron	ENST00000395347	ENST00000510382		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
intron-intron	ENST00000395347	ENST00000460468		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000395348	ENST00000280772		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000395348	ENST00000373827		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000395348	ENST00000355288		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000395348	ENST00000503366		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-intron	ENST00000395348	ENST00000510382		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-intron	ENST00000395348	ENST00000460468		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000490066	ENST00000280772		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000490066	ENST00000373827		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000490066	ENST00000355288		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-3CDS	ENST00000490066	ENST00000503366		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-intron	ENST00000490066	ENST00000510382		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
5UTR-intron	ENST00000490066	ENST00000460468		TCGA	RV	HNSC	TCGA-CR-7367-01A	SLC16A9	chr10	61469237	-	ANK3	chr10	61815794	-
In-frame	ENST00000361193	ENST00000328965		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000361193	ENST00000531220		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
5CDS-intron	ENST00000361193	ENST00000534735		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000411502	ENST00000328965		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000411502	ENST00000531220		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
5CDS-intron	ENST00000411502	ENST00000534735		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000546047	ENST00000328965		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000546047	ENST00000531220		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
5CDS-intron	ENST00000546047	ENST00000534735		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
intron-3CDS	ENST00000571602	ENST00000328965		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
intron-3CDS	ENST00000571602	ENST00000531220		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
intron-intron	ENST00000571602	ENST00000534735		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000572725	ENST00000328965		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
In-frame	ENST00000572725	ENST00000531220		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
5CDS-intron	ENST00000572725	ENST00000534735		TCGA	RV	HNSC	TCGA-CV-5443-01A	SLC26A11	chr17	78211393	+	OAF	chr11	120099577	+
intron-3CDS	ENST00000541742	ENST00000487338		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-5UTR	ENST00000541742	ENST00000498046		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-intron	ENST00000541742	ENST00000339986		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5UTR-3CDS	ENST00000490107	ENST00000487338		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5UTR-5UTR	ENST00000490107	ENST00000498046		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5UTR-intron	ENST00000490107	ENST00000339986		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
In-frame	ENST00000388985	ENST00000487338		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-5UTR	ENST00000388985	ENST00000498046		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-intron	ENST00000388985	ENST00000339986		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-3CDS	ENST00000366517	ENST00000487338		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-5UTR	ENST00000366517	ENST00000498046		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
intron-intron	ENST00000366517	ENST00000339986		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
In-frame	ENST00000403792	ENST00000487338		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-5UTR	ENST00000403792	ENST00000498046		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
5CDS-intron	ENST00000403792	ENST00000339986		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMYD3	chr1	246670356	-	ZNF695	chr1	247131094	-
Frame-shit	ENST00000393651	ENST00000450689		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
In-frame	ENST00000393651	ENST00000297222		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
Frame-shit	ENST00000393651	ENST00000444627		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
In-frame	ENST00000393651	ENST00000416314		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
5CDS-intron	ENST00000393651	ENST00000490995		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
Frame-shit	ENST00000357311	ENST00000450689		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
In-frame	ENST00000357311	ENST00000297222		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
Frame-shit	ENST00000357311	ENST00000444627		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
In-frame	ENST00000357311	ENST00000416314		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
5CDS-intron	ENST00000357311	ENST00000490995		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
In-frame	ENST00000489828	ENST00000450689		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
Frame-shit	ENST00000489828	ENST00000297222		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
Frame-shit	ENST00000489828	ENST00000444627		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
Frame-shit	ENST00000489828	ENST00000416314		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
5CDS-intron	ENST00000489828	ENST00000490995		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
intron-3CDS	ENST00000493638	ENST00000450689		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
intron-3CDS	ENST00000493638	ENST00000297222		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
intron-3CDS	ENST00000493638	ENST00000444627		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
intron-3CDS	ENST00000493638	ENST00000416314		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
intron-intron	ENST00000493638	ENST00000490995		TCGA	RV	HNSC	TCGA-BB-4224-01A	SRPK2	chr7	104844075	-	KIAA1324L	chr7	86509846	-
intron-3CDS	ENST00000487143	ENST00000334956		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000487143	ENST00000539723		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000487143	ENST00000550549		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
intron-5UTR	ENST00000487143	ENST00000538608		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
intron-5UTR	ENST00000487143	ENST00000526746		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
Frame-shit	ENST00000355999	ENST00000334956		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
Frame-shit	ENST00000355999	ENST00000539723		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
Frame-shit	ENST00000355999	ENST00000550549		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
5CDS-5UTR	ENST00000355999	ENST00000538608		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
5CDS-5UTR	ENST00000355999	ENST00000526746		TCGA	RV	HNSC	TCGA-QK-A6IG-01A	STK39	chr2	169103738	-	PARVA	chr11	12495292	+
Frame-shit	ENST00000447399	ENST00000450114		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SWAP70	chr11	9715833	+	WEE1	chr11	9603079	+
Frame-shit	ENST00000447399	ENST00000299613		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SWAP70	chr11	9715833	+	WEE1	chr11	9603079	+
Frame-shit	ENST00000318950	ENST00000450114		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SWAP70	chr11	9715833	+	WEE1	chr11	9603079	+
Frame-shit	ENST00000318950	ENST00000299613		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SWAP70	chr11	9715833	+	WEE1	chr11	9603079	+
Frame-shit	ENST00000361905	ENST00000356136		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000361905	ENST00000528420		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-5UTR	ENST00000361905	ENST00000533454		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361905	ENST00000531818		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361905	ENST00000532130		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361905	ENST00000539288		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361905	ENST00000525872		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361905	ENST00000538870		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000527636	ENST00000356136		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000527636	ENST00000528420		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-5UTR	ENST00000527636	ENST00000533454		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527636	ENST00000531818		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527636	ENST00000532130		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527636	ENST00000539288		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527636	ENST00000525872		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527636	ENST00000538870		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000527575	ENST00000356136		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000527575	ENST00000528420		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-5UTR	ENST00000527575	ENST00000533454		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527575	ENST00000531818		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527575	ENST00000532130		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527575	ENST00000539288		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527575	ENST00000525872		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000527575	ENST00000538870		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000334310	ENST00000356136		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000334310	ENST00000528420		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-5UTR	ENST00000334310	ENST00000533454		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000334310	ENST00000531818		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000334310	ENST00000532130		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000334310	ENST00000539288		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000334310	ENST00000525872		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000334310	ENST00000538870		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000361985	ENST00000356136		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
Frame-shit	ENST00000361985	ENST00000528420		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-5UTR	ENST00000361985	ENST00000533454		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361985	ENST00000531818		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361985	ENST00000532130		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361985	ENST00000539288		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361985	ENST00000525872		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
5CDS-intron	ENST00000361985	ENST00000538870		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-3CDS	ENST00000526600	ENST00000356136		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-3CDS	ENST00000526600	ENST00000528420		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-5UTR	ENST00000526600	ENST00000533454		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-intron	ENST00000526600	ENST00000531818		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-intron	ENST00000526600	ENST00000532130		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-intron	ENST00000526600	ENST00000539288		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-intron	ENST00000526600	ENST00000525872		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
intron-intron	ENST00000526600	ENST00000538870		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TEAD1	chr11	12785981	+	UVRAG	chr11	75672488	+
In-frame	ENST00000283916	ENST00000248701		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
In-frame	ENST00000283916	ENST00000506738		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
In-frame	ENST00000283916	ENST00000504762		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
5UTR-3CDS	ENST00000545541	ENST00000248701		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
5UTR-3CDS	ENST00000545541	ENST00000506738		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
5UTR-3CDS	ENST00000545541	ENST00000504762		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
5UTR-3CDS	ENST00000509584	ENST00000248701		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
5UTR-3CDS	ENST00000509584	ENST00000506738		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
5UTR-3CDS	ENST00000509584	ENST00000504762		TCGA	RV	HNSC	TCGA-F7-7848-01A	TMPRSS11D	chr4	68749644	-	SPINK2	chr4	57677960	-
In-frame	ENST00000245912	ENST00000599564		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
In-frame	ENST00000245912	ENST00000317991		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
In-frame	ENST00000245912	ENST00000504615		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
In-frame	ENST00000245912	ENST00000411896		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
5CDS-intron	ENST00000245912	ENST00000424536		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
5CDS-intron	ENST00000245912	ENST00000598073		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000326176	ENST00000599564		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000326176	ENST00000317991		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000326176	ENST00000504615		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000326176	ENST00000411896		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
5CDS-intron	ENST00000326176	ENST00000424536		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
5CDS-intron	ENST00000326176	ENST00000598073		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000599359	ENST00000599564		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000599359	ENST00000317991		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000599359	ENST00000504615		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
Frame-shit	ENST00000599359	ENST00000411896		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
5CDS-intron	ENST00000599359	ENST00000424536		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
5CDS-intron	ENST00000599359	ENST00000598073		TCGA	RV	HNSC	TCGA-CN-5369-01A	TNFSF14	chr19	6667124	-	GRAMD1A	chr19	35510095	+
In-frame	ENST00000264731	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000264731	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
intron-3CDS	ENST00000382063	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
intron-5UTR	ENST00000382063	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000418709	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000418709	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000320472	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000320472	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000392460	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000392460	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000440651	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000440651	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000354600	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000354600	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000437221	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000437221	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000392463	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000392463	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000392461	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000392461	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000456148	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000456148	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
intron-3CDS	ENST00000449992	ENST00000319332		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
intron-5UTR	ENST00000449992	ENST00000427335		TCGA	RV	HNSC	TCGA-CN-A49A-01A	TP63	chr3	189526315	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000334379	ENST00000229633		TCGA	RV	HNSC	TCGA-CV-5434-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
In-frame	ENST00000368332	ENST00000229633		TCGA	RV	HNSC	TCGA-CV-5434-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
In-frame	ENST00000450358	ENST00000229633		TCGA	RV	HNSC	TCGA-CV-5434-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
intron-3CDS	ENST00000489934	ENST00000229633		TCGA	RV	HNSC	TCGA-CV-5434-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
In-frame	ENST00000458659	ENST00000302787		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
5CDS-intron	ENST00000458659	ENST00000512189		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
intron-3CDS	ENST00000501704	ENST00000302787		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
intron-intron	ENST00000501704	ENST00000512189		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
intron-3CDS	ENST00000261489	ENST00000302787		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
intron-intron	ENST00000261489	ENST00000512189		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
5UTR-3CDS	ENST00000460842	ENST00000302787		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
5UTR-intron	ENST00000460842	ENST00000512189		TCGA	RV	HNSC	TCGA-CN-4728-01A	TSC22D1	chr13	45147299	-	LETM1	chr4	1827410	-
In-frame	ENST00000520539	ENST00000560371		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000520539	ENST00000347662		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000520539	ENST00000392745		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000520539	ENST00000539721		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000520539	ENST00000351691		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000220959	ENST00000560371		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000220959	ENST00000347662		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000220959	ENST00000392745		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000220959	ENST00000539721		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000220959	ENST00000351691		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000518205	ENST00000560371		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000518205	ENST00000347662		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000518205	ENST00000392745		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000518205	ENST00000539721		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000518205	ENST00000351691		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000521922	ENST00000560371		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000521922	ENST00000347662		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
In-frame	ENST00000521922	ENST00000392745		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000521922	ENST00000539721		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-intron	ENST00000521922	ENST00000351691		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
intron-3CDS	ENST00000519528	ENST00000560371		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
intron-3CDS	ENST00000519528	ENST00000347662		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
intron-3CDS	ENST00000519528	ENST00000392745		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
intron-intron	ENST00000519528	ENST00000539721		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
intron-intron	ENST00000519528	ENST00000351691		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	UBR5	chr8	103269860	-	TRAF3	chr14	103352526	+
5CDS-5UTR	ENST00000535572	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000535572	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000535572	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000535572	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000537687	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000537687	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000537687	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000537687	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000315939	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000315939	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000315939	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000315939	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000447667	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000447667	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000447667	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000447667	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000530271	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000530271	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000530271	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000530271	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000540360	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000540360	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000540360	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000540360	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000340908	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000340908	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000340908	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000340908	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000574564	ENST00000159111		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000574564	ENST00000381759		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000574564	ENST00000536461		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000574564	ENST00000592175		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	WNK1	chr12	863490	+	KDM4B	chr19	5016268	+
Frame-shit	ENST00000403733	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000403733	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000403733	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5CDS-5UTR	ENST00000403733	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5UTR-3CDS	ENST00000378925	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5UTR-3CDS	ENST00000378925	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5UTR-3CDS	ENST00000378925	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5UTR-5UTR	ENST00000378925	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000513834	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000513834	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000513834	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5CDS-5UTR	ENST00000513834	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000448232	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000448232	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
Frame-shit	ENST00000448232	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5CDS-5UTR	ENST00000448232	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000504005	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000504005	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000504005	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-5UTR	ENST00000504005	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000506225	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000506225	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000506225	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-5UTR	ENST00000506225	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000508747	ENST00000393540		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000508747	ENST00000307588		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-3CDS	ENST00000508747	ENST00000510617		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
intron-5UTR	ENST00000508747	ENST00000507501		TCGA	RV	HNSC	TCGA-H7-A6C4-01A	WWC2	chr4	184020775	+	CCDC110	chr4	186392203	-
5UTR-3CDS	ENST00000356401	ENST00000344204		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-3CDS	ENST00000356401	ENST00000537187		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-3CDS	ENST00000356401	ENST00000509967		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-intron	ENST00000356401	ENST00000515710		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-intron	ENST00000356401	ENST00000344135		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-3CDS	ENST00000449376	ENST00000344204		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-3CDS	ENST00000449376	ENST00000537187		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-3CDS	ENST00000449376	ENST00000509967		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-intron	ENST00000449376	ENST00000515710		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-intron	ENST00000449376	ENST00000344135		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
3UTR-3CDS	ENST00000490095	ENST00000344204		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
3UTR-3CDS	ENST00000490095	ENST00000537187		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
3UTR-3CDS	ENST00000490095	ENST00000509967		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
3UTR-intron	ENST00000490095	ENST00000515710		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
3UTR-intron	ENST00000490095	ENST00000344135		TCGA	RV	HNSC	TCGA-BA-5153-01A	ARIH2	chr3	48956431	+	TRIO	chr5	14286980	+
5UTR-3CDS	ENST00000396441	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000396441	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000396441	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000396441	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000396441	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000396441	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389707	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000389707	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000401424	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000401424	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000401424	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000401424	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000401424	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000401424	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000389708	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000389708	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000361003	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000361003	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403290	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000403290	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403510	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403510	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403510	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403510	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-3CDS	ENST00000403510	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
5UTR-intron	ENST00000403510	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000403482	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000403482	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000361905		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000527636		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000527575		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000334310		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-3CDS	ENST00000497429	ENST00000361985		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
intron-intron	ENST00000497429	ENST00000526600		TCGA	RV	HNSC	TCGA-CV-6961-01A	ARNTL	chr11	13299470	+	TEAD1	chr11	12883797	+
Frame-shit	ENST00000305877	ENST00000447733		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000305877	ENST00000449058		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000305877	ENST00000425375		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000305877	ENST00000411850		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000305877	ENST00000436462		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000305877	ENST00000382034		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000359540	ENST00000447733		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000359540	ENST00000449058		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000359540	ENST00000425375		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000359540	ENST00000411850		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000359540	ENST00000436462		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000359540	ENST00000382034		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000398512	ENST00000447733		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000398512	ENST00000449058		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000398512	ENST00000425375		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000398512	ENST00000411850		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000398512	ENST00000436462		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
Frame-shit	ENST00000398512	ENST00000382034		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000436990	ENST00000447733		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000436990	ENST00000449058		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000436990	ENST00000425375		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000436990	ENST00000411850		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000436990	ENST00000436462		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
intron-3CDS	ENST00000436990	ENST00000382034		TCGA	RV	HNSC	TCGA-CV-7421-01A	BCR	chr22	23524426	+	TOM1	chr22	35723264	+
5CDS-5UTR	ENST00000342704	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
5UTR-5UTR	ENST00000375279	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000344201	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000397798	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000346541	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000397800	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000492345	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000359606	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000491618	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
intron-5UTR	ENST00000543126	ENST00000201979		TCGA	RV	HNSC	TCGA-CN-A6UY-01A	CBFA2T2	chr20	32078107	+	REM1	chr20	30064030	+
5CDS-5UTR	ENST00000262738	ENST00000337959		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000262738	ENST00000263246		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000262738	ENST00000407585		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000262738	ENST00000403744		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000262738	ENST00000402229		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000395964	ENST00000337959		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000395964	ENST00000263246		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000395964	ENST00000407585		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000395964	ENST00000403744		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
5CDS-5UTR	ENST00000395964	ENST00000402229		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
intron-5UTR	ENST00000497509	ENST00000337959		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
intron-5UTR	ENST00000497509	ENST00000263246		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
intron-5UTR	ENST00000497509	ENST00000407585		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
intron-5UTR	ENST00000497509	ENST00000403744		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
intron-5UTR	ENST00000497509	ENST00000402229		TCGA	RV	HNSC	TCGA-CV-6941-01A	CELSR1	chr22	46859604	-	PACSIN2	chr22	43308163	-
In-frame	ENST00000357749	ENST00000373119		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
In-frame	ENST00000357749	ENST00000373114		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
5UTR-3CDS	ENST00000467744	ENST00000373119		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
5UTR-3CDS	ENST00000467744	ENST00000373114		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
intron-3CDS	ENST00000537751	ENST00000373119		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
intron-3CDS	ENST00000537751	ENST00000373114		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
In-frame	ENST00000358786	ENST00000373119		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
In-frame	ENST00000358786	ENST00000373114		TCGA	RV	HNSC	TCGA-CR-7367-01A	CHM	chrX	85282495	-	KLHL4	chrX	86868880	+
In-frame	ENST00000547956	ENST00000229330		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
5CDS-intron	ENST00000547956	ENST00000550335		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
In-frame	ENST00000549260	ENST00000229330		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
5CDS-intron	ENST00000549260	ENST00000550335		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
In-frame	ENST00000303694	ENST00000229330		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
5CDS-intron	ENST00000303694	ENST00000550335		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
In-frame	ENST00000546689	ENST00000229330		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
5CDS-intron	ENST00000546689	ENST00000550335		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
intron-3CDS	ENST00000550711	ENST00000229330		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
intron-intron	ENST00000550711	ENST00000550335		TCGA	RV	HNSC	TCGA-CV-7416-01A	CHST11	chr12	104851292	+	HCFC2	chr12	104459945	+
In-frame	ENST00000376873	ENST00000393020		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000376873	ENST00000529221		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000376873	ENST00000314756		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000376873	ENST00000483239		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
5CDS-3UTR	ENST00000376873	ENST00000478125		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000393020		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000529221		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000314756		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000483239		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
5CDS-3UTR	ENST00000299339	ENST00000478125		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
Frame-shit	ENST00000376855	ENST00000393020		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
Frame-shit	ENST00000376855	ENST00000529221		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
Frame-shit	ENST00000376855	ENST00000314756		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
Frame-shit	ENST00000376855	ENST00000483239		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
5CDS-3UTR	ENST00000376855	ENST00000478125		TCGA	RV	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96212717	+	TTC12	chr11	113220795	+
intron-3CDS	ENST00000540367	ENST00000334134		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	FGF3	chr11	69631191	-
5UTR-3CDS	ENST00000376618	ENST00000334134		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	FGF3	chr11	69631191	-
5UTR-3CDS	ENST00000265641	ENST00000334134		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000539743	ENST00000334134		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000537756	ENST00000334134		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000538994	ENST00000334134		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	FGF3	chr11	69631191	-
5UTR-3CDS	ENST00000267085	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
5UTR-3CDS	ENST00000267085	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
5UTR-3CDS	ENST00000379843	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
5UTR-3CDS	ENST00000379843	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
5UTR-3CDS	ENST00000379846	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
5UTR-3CDS	ENST00000379846	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000444623	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000444623	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000453446	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000453446	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000542115	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000542115	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000491654	ENST00000609999		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
intron-3CDS	ENST00000491654	ENST00000267017		TCGA	RV	HNSC	TCGA-P3-A6SX-01A	CSAD	chr12	53574351	-	NPFF	chr12	53900926	-
In-frame	ENST00000296414	ENST00000396578		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	DAPP1	chr4	100784229	+	COL4A3	chr2	228176502	+
5CDS-intron	ENST00000296414	ENST00000468753		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	DAPP1	chr4	100784229	+	COL4A3	chr2	228176502	+
In-frame	ENST00000512369	ENST00000396578		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	DAPP1	chr4	100784229	+	COL4A3	chr2	228176502	+
5CDS-intron	ENST00000512369	ENST00000468753		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	DAPP1	chr4	100784229	+	COL4A3	chr2	228176502	+
In-frame	ENST00000377452	ENST00000202677		TCGA	RV	HNSC	TCGA-CV-5440-01A	DTD1	chr20	18608877	+	RALGAPA2	chr20	20527476	-
5CDS-intron	ENST00000377452	ENST00000495793		TCGA	RV	HNSC	TCGA-CV-5440-01A	DTD1	chr20	18608877	+	RALGAPA2	chr20	20527476	-
3UTR-3CDS	ENST00000494921	ENST00000202677		TCGA	RV	HNSC	TCGA-CV-5440-01A	DTD1	chr20	18608877	+	RALGAPA2	chr20	20527476	-
3UTR-intron	ENST00000494921	ENST00000495793		TCGA	RV	HNSC	TCGA-CV-5440-01A	DTD1	chr20	18608877	+	RALGAPA2	chr20	20527476	-
5UTR-3CDS	ENST00000318789	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000318789	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000475937	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000475937	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000493089	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000493089	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000484350	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000484350	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000318779	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5UTR-3CDS	ENST00000318779	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000491238	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000491238	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000498215	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000498215	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000468577	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000468577	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000472382	ENST00000356297		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
intron-3CDS	ENST00000472382	ENST00000543296		TCGA	RV	HNSC	TCGA-CN-5370-01A	FOXP1	chr3	71542577	-	PXDNL	chr8	52412330	-
5CDS-intron	ENST00000340250	ENST00000354817		TCGA	RV	HNSC	TCGA-CN-5364-01A	FSCN1	chr7	5646279	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000340250	ENST00000527202		TCGA	RV	HNSC	TCGA-CN-5364-01A	FSCN1	chr7	5646279	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000340250	ENST00000532502		TCGA	RV	HNSC	TCGA-CN-5364-01A	FSCN1	chr7	5646279	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000382361	ENST00000354817		TCGA	RV	HNSC	TCGA-CN-5364-01A	FSCN1	chr7	5646279	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000382361	ENST00000527202		TCGA	RV	HNSC	TCGA-CN-5364-01A	FSCN1	chr7	5646279	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000382361	ENST00000532502		TCGA	RV	HNSC	TCGA-CN-5364-01A	FSCN1	chr7	5646279	+	FAR1	chr11	13744912	+
Frame-shit	ENST00000377047	ENST00000377067		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	HNSC	TCGA-CQ-6224-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000277817	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
Frame-shit	ENST00000277817	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-intron	ENST00000277817	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-5UTR	ENST00000277817	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
In-frame	ENST00000412272	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
In-frame	ENST00000412272	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-intron	ENST00000412272	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-5UTR	ENST00000412272	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
In-frame	ENST00000395198	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
In-frame	ENST00000395198	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-intron	ENST00000395198	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-5UTR	ENST00000395198	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
In-frame	ENST00000373700	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
In-frame	ENST00000373700	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-intron	ENST00000373700	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
5CDS-5UTR	ENST00000373700	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
3UTR-3CDS	ENST00000395187	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
3UTR-3CDS	ENST00000395187	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
3UTR-intron	ENST00000395187	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
3UTR-5UTR	ENST00000395187	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-3CDS	ENST00000480158	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-3CDS	ENST00000480158	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-intron	ENST00000480158	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-5UTR	ENST00000480158	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-3CDS	ENST00000492996	ENST00000433211		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-3CDS	ENST00000492996	ENST00000373744		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-intron	ENST00000492996	ENST00000545309		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
intron-5UTR	ENST00000492996	ENST00000373735		TCGA	RV	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69748420	-	CTNNA3	chr10	67748555	-
3UTR-intron	ENST00000529261	ENST00000395648		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
3UTR-5UTR	ENST00000529261	ENST00000308212		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
3UTR-5UTR	ENST00000529261	ENST00000533940		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
3UTR-intron	ENST00000529261	ENST00000525680		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
3UTR-intron	ENST00000529261	ENST00000531130		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
3UTR-intron	ENST00000529261	ENST00000531928		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-intron	ENST00000278353	ENST00000395648		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-5UTR	ENST00000278353	ENST00000308212		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-5UTR	ENST00000278353	ENST00000533940		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-intron	ENST00000278353	ENST00000525680		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-intron	ENST00000278353	ENST00000531130		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-intron	ENST00000278353	ENST00000531928		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
intron-intron	ENST00000395700	ENST00000395648		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
intron-5UTR	ENST00000395700	ENST00000308212		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
intron-5UTR	ENST00000395700	ENST00000533940		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
intron-intron	ENST00000395700	ENST00000525680		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
intron-intron	ENST00000395700	ENST00000531130		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
intron-intron	ENST00000395700	ENST00000531928		TCGA	RV	HNSC	TCGA-CR-6478-01A	HSD17B12	chr11	43837941	+	TP53I11	chr11	44960741	-
5CDS-intron	ENST00000336861	ENST00000354817		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000336861	ENST00000527202		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000336861	ENST00000532502		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000246635	ENST00000354817		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000246635	ENST00000527202		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000246635	ENST00000532502		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
intron-intron	ENST00000587544	ENST00000354817		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
intron-intron	ENST00000587544	ENST00000527202		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
intron-intron	ENST00000587544	ENST00000532502		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
intron-intron	ENST00000587118	ENST00000354817		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
intron-intron	ENST00000587118	ENST00000527202		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
intron-intron	ENST00000587118	ENST00000532502		TCGA	RV	HNSC	TCGA-HD-8224-01A	KRT13	chr17	39657233	-	FAR1	chr11	13744912	+
Frame-shit	ENST00000330909	ENST00000488423		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000330909	ENST00000383775		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5CDS-5UTR	ENST00000330909	ENST00000285082		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000402939	ENST00000488423		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000402939	ENST00000383775		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5CDS-5UTR	ENST00000402939	ENST00000285082		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000483466	ENST00000488423		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000483466	ENST00000383775		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5CDS-5UTR	ENST00000483466	ENST00000285082		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000497477	ENST00000488423		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
Frame-shit	ENST00000497477	ENST00000383775		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5CDS-5UTR	ENST00000497477	ENST00000285082		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5UTR-3CDS	ENST00000470990	ENST00000488423		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5UTR-3CDS	ENST00000470990	ENST00000383775		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
5UTR-5UTR	ENST00000470990	ENST00000285082		TCGA	RV	HNSC	TCGA-CR-5248-01A	MAGI1	chr3	65607647	-	DPH3	chr3	16302336	-
In-frame	ENST00000367321	ENST00000425013		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
In-frame	ENST00000367321	ENST00000389902		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
5CDS-intron	ENST00000367321	ENST00000469375		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
intron-3CDS	ENST00000367307	ENST00000425013		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
intron-3CDS	ENST00000367307	ENST00000389902		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
intron-intron	ENST00000367307	ENST00000469375		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
3UTR-3CDS	ENST00000478643	ENST00000425013		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
3UTR-3CDS	ENST00000478643	ENST00000389902		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
3UTR-intron	ENST00000478643	ENST00000469375		TCGA	RV	HNSC	TCGA-CV-7236-01A	MTHFD1L	chr6	151293194	+	RNF216	chr7	5760803	-
5CDS-intron	ENST00000431794	ENST00000368622		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
5CDS-intron	ENST00000431794	ENST00000368625		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
5CDS-intron	ENST00000268852	ENST00000368622		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
5CDS-intron	ENST00000268852	ENST00000368625		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
5CDS-intron	ENST00000586007	ENST00000368622		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
5CDS-intron	ENST00000586007	ENST00000368625		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
intron-intron	ENST00000544606	ENST00000368622		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
intron-intron	ENST00000544606	ENST00000368625		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
intron-intron	ENST00000590081	ENST00000368622		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
intron-intron	ENST00000590081	ENST00000368625		TCGA	RV	HNSC	TCGA-DQ-5624-01A	MYO19	chr17	34881059	-	STK32C	chr10	134137877	-
5UTR-3CDS	ENST00000369981	ENST00000370010		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369981	ENST00000370014		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369981	ENST00000447266		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369981	ENST00000541192		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-intron	ENST00000369981	ENST00000327284		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-intron	ENST00000369981	ENST00000436928		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369985	ENST00000370010		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369985	ENST00000370014		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369985	ENST00000447266		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369985	ENST00000541192		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-intron	ENST00000369985	ENST00000327284		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-intron	ENST00000369985	ENST00000436928		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369977	ENST00000370010		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369977	ENST00000370014		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369977	ENST00000447266		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-3CDS	ENST00000369977	ENST00000541192		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-intron	ENST00000369977	ENST00000327284		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
5UTR-intron	ENST00000369977	ENST00000436928		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000369975	ENST00000370010		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000369975	ENST00000370014		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000369975	ENST00000447266		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000369975	ENST00000541192		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-intron	ENST00000369975	ENST00000327284		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-intron	ENST00000369975	ENST00000436928		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-3CDS	ENST00000462633	ENST00000541192		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-intron	ENST00000462633	ENST00000327284		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	HNSC	TCGA-DQ-7589-01A	MYO6	chr6	76459140	+	SENP6	chr6	76419243	+
Frame-shit	ENST00000355117	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000355117	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000355117	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000355117	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000355117	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000355117	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000540841	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540841	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540841	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540841	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540841	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000540841	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000540178	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540178	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540178	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540178	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000540178	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000540178	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000360409	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000360409	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000360409	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000417189	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000417189	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000417189	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000417189	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000417189	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000417189	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000357118	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357118	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000357118	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000357785	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000357785	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000357785	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000272849	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000272849	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000272849	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
Frame-shit	ENST00000412873	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-intron	ENST00000412873	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
5CDS-3UTR	ENST00000412873	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
intron-3CDS	ENST00000485684	ENST00000406610		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000485684	ENST00000462231		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000485684	ENST00000349953		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000485684	ENST00000358768		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
intron-intron	ENST00000485684	ENST00000351153		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
intron-3UTR	ENST00000485684	ENST00000488622		TCGA	RV	HNSC	TCGA-P3-A6T3-01A	NRP2	chr2	206562445	+	PARD3B	chr2	206480180	+
In-frame	ENST00000284548	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
In-frame	ENST00000284548	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5CDS-5UTR	ENST00000284548	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
In-frame	ENST00000570156	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
In-frame	ENST00000570156	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5CDS-5UTR	ENST00000570156	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5UTR-3CDS	ENST00000366709	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5UTR-3CDS	ENST00000366709	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5UTR-5UTR	ENST00000366709	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
In-frame	ENST00000422127	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
In-frame	ENST00000422127	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5CDS-5UTR	ENST00000422127	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5UTR-3CDS	ENST00000366707	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5UTR-3CDS	ENST00000366707	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
5UTR-5UTR	ENST00000366707	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
intron-3CDS	ENST00000359599	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
intron-3CDS	ENST00000359599	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
intron-5UTR	ENST00000359599	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
intron-3CDS	ENST00000602685	ENST00000377022		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
intron-3CDS	ENST00000602685	ENST00000344008		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
intron-5UTR	ENST00000602685	ENST00000478728		TCGA	RV	HNSC	TCGA-BB-4223-01A	OBSCN	chr1	228412435	+	CASZ1	chr1	10725628	-
In-frame	ENST00000264833	ENST00000264828		TCGA	RV	HNSC	TCGA-CR-7388-01A	OLFM2	chr19	10046980	-	COL5A3	chr19	10080358	-
intron-3CDS	ENST00000590841	ENST00000264828		TCGA	RV	HNSC	TCGA-CR-7388-01A	OLFM2	chr19	10046980	-	COL5A3	chr19	10080358	-
Frame-shit	ENST00000227638	ENST00000315765		TCGA	RV	HNSC	TCGA-CV-7247-01A	PANX1	chr11	93862659	+	HEPHL1	chr11	93826667	+
Frame-shit	ENST00000436171	ENST00000315765		TCGA	RV	HNSC	TCGA-CV-7247-01A	PANX1	chr11	93862659	+	HEPHL1	chr11	93826667	+
5CDS-intron	ENST00000392723	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000392723	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000392723	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000392723	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000361398	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000361398	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000361398	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000361398	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000271715	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000271715	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000271715	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000271715	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000368863	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000368863	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000368863	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000368863	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000409503	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000409503	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000409503	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000409503	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000531094	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000531094	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000531094	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000531094	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5UTR-intron	ENST00000540984	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5UTR-intron	ENST00000540984	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5UTR-intron	ENST00000540984	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5UTR-intron	ENST00000540984	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000491586	ENST00000445055		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000491586	ENST00000343164		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000491586	ENST00000539668		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5CDS-intron	ENST00000491586	ENST00000436453		TCGA	RV	HNSC	TCGA-UF-A7JD-01A	POGZ	chr1	151395873	-	SLC6A13	chr12	352979	-
5UTR-3CDS	ENST00000312828	ENST00000357637		TCGA	RV	HNSC	TCGA-CV-6954-01A	RNF152	chr18	59560028	-	PIGN	chr18	59774318	-
5UTR-3CDS	ENST00000312828	ENST00000400334		TCGA	RV	HNSC	TCGA-CV-6954-01A	RNF152	chr18	59560028	-	PIGN	chr18	59774318	-
5UTR-intron	ENST00000312828	ENST00000593225		TCGA	RV	HNSC	TCGA-CV-6954-01A	RNF152	chr18	59560028	-	PIGN	chr18	59774318	-
5UTR-3CDS	ENST00000588064	ENST00000357637		TCGA	RV	HNSC	TCGA-CV-6954-01A	RNF152	chr18	59560028	-	PIGN	chr18	59774318	-
5UTR-3CDS	ENST00000588064	ENST00000400334		TCGA	RV	HNSC	TCGA-CV-6954-01A	RNF152	chr18	59560028	-	PIGN	chr18	59774318	-
5UTR-intron	ENST00000588064	ENST00000593225		TCGA	RV	HNSC	TCGA-CV-6954-01A	RNF152	chr18	59560028	-	PIGN	chr18	59774318	-
intron-intron	ENST00000379056	ENST00000267101		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000450146		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000415288		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000553131		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000411731		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000549832		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000267101		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000450146		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000415288		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000553131		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000411731		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000549832		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000267101		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000450146		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000415288		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000553131		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000411731		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000549832		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000267101		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000450146		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000415288		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000553131		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000411731		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000549832		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000267101		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000450146		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000415288		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000553131		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000411731		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000549832		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000267101		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000450146		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000415288		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000553131		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000411731		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000549832		TCGA	RV	HNSC	TCGA-CN-5356-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
In-frame	ENST00000355621	ENST00000358303		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000355621	ENST00000360708		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000355621	ENST00000311873		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000355621	ENST00000481503		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000473814	ENST00000358303		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000473814	ENST00000360708		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000473814	ENST00000311873		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
In-frame	ENST00000473814	ENST00000481503		TCGA	RV	HNSC	TCGA-F7-A623-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129668869	-
Frame-shit	ENST00000264689	ENST00000281821		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
Frame-shit	ENST00000264689	ENST00000409854		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
Frame-shit	ENST00000264689	ENST00000409938		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
Frame-shit	ENST00000264689	ENST00000392071		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
5CDS-intron	ENST00000264689	ENST00000469354		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
intron-3CDS	ENST00000502282	ENST00000281821		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
intron-3CDS	ENST00000502282	ENST00000409854		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
intron-3CDS	ENST00000502282	ENST00000409938		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
intron-3CDS	ENST00000502282	ENST00000392071		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
intron-intron	ENST00000502282	ENST00000469354		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	UFSP2	chr4	186347020	-	EPHA4	chr2	222365892	-
3UTR-intron	ENST00000459775	ENST00000393761		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
3UTR-intron	ENST00000459775	ENST00000393759		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
3UTR-intron	ENST00000459775	ENST00000349455		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
3UTR-intron	ENST00000459775	ENST00000331469		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
3UTR-intron	ENST00000459775	ENST00000390655		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
3UTR-intron	ENST00000459775	ENST00000431506		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-intron	ENST00000450066	ENST00000393761		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-intron	ENST00000450066	ENST00000393759		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-intron	ENST00000450066	ENST00000349455		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-intron	ENST00000450066	ENST00000331469		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-intron	ENST00000450066	ENST00000390655		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-intron	ENST00000450066	ENST00000431506		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409025	ENST00000393761		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409025	ENST00000393759		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409025	ENST00000349455		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409025	ENST00000331469		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409025	ENST00000390655		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409025	ENST00000431506		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409470	ENST00000393761		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409470	ENST00000393759		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409470	ENST00000349455		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409470	ENST00000331469		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409470	ENST00000390655		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409470	ENST00000431506		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000323701	ENST00000393761		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000323701	ENST00000393759		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000323701	ENST00000349455		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000323701	ENST00000331469		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000323701	ENST00000390655		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000323701	ENST00000431506		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409766	ENST00000393761		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409766	ENST00000393759		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409766	ENST00000349455		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409766	ENST00000331469		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409766	ENST00000390655		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
5CDS-intron	ENST00000409766	ENST00000431506		TCGA	RV	HNSC	TCGA-CV-7421-01A	USP39	chr2	85848702	+	CD8B	chr2	87049497	-
intron-5UTR	ENST00000464611	ENST00000246802		TCGA	RV	HNSC	TCGA-CQ-A4CD-01A	ACTB	chr7	5567255	-	GLTSCR2	chr19	48248811	+
intron-intron	ENST00000464611	ENST00000598681		TCGA	RV	HNSC	TCGA-CQ-A4CD-01A	ACTB	chr7	5567255	-	GLTSCR2	chr19	48248811	+
intron-5UTR	ENST00000331789	ENST00000246802		TCGA	RV	HNSC	TCGA-CQ-A4CD-01A	ACTB	chr7	5567255	-	GLTSCR2	chr19	48248811	+
intron-intron	ENST00000331789	ENST00000598681		TCGA	RV	HNSC	TCGA-CQ-A4CD-01A	ACTB	chr7	5567255	-	GLTSCR2	chr19	48248811	+
Frame-shit	ENST00000534328	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	AP2A2	chr11	926088	+	TRIM22	chr11	5718478	+
Frame-shit	ENST00000332231	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	AP2A2	chr11	926088	+	TRIM22	chr11	5718478	+
Frame-shit	ENST00000448903	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	AP2A2	chr11	926088	+	TRIM22	chr11	5718478	+
intron-3CDS	ENST00000525891	ENST00000379965		TCGA	RV	HNSC	TCGA-CV-7424-01A	AP2A2	chr11	926088	+	TRIM22	chr11	5718478	+
Frame-shit	ENST00000389532	ENST00000357365		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000389532	ENST00000298537		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000389532	ENST00000371725		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
5CDS-intron	ENST00000389532	ENST00000461693		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000312405	ENST00000357365		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000312405	ENST00000298537		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000312405	ENST00000371725		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-intron	ENST00000312405	ENST00000461693		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000483991	ENST00000357365		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000483991	ENST00000298537		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000483991	ENST00000371725		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
intron-intron	ENST00000483991	ENST00000461693		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000409386	ENST00000357365		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000409386	ENST00000298537		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000409386	ENST00000371725		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
5CDS-intron	ENST00000409386	ENST00000461693		TCGA	RV	HNSC	TCGA-D6-8569-01A	CAMSAP1	chr9	138798846	-	SDCCAG3	chr9	139302390	-
5CDS-intron	ENST00000540367	ENST00000540363		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000540367	ENST00000331597		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000540367	ENST00000427714		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000376618	ENST00000540363		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000376618	ENST00000331597		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000376618	ENST00000427714		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000265641	ENST00000540363		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000265641	ENST00000331597		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000265641	ENST00000427714		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000539743	ENST00000540363		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000539743	ENST00000331597		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
5CDS-intron	ENST00000539743	ENST00000427714		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-intron	ENST00000537756	ENST00000540363		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-intron	ENST00000537756	ENST00000331597		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-intron	ENST00000537756	ENST00000427714		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-intron	ENST00000538994	ENST00000540363		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-intron	ENST00000538994	ENST00000331597		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-intron	ENST00000538994	ENST00000427714		TCGA	RV	HNSC	TCGA-CN-A49C-01A	CPT1A	chr11	68549239	-	P4HA3	chr11	74000175	-
intron-3UTR	ENST00000548567	ENST00000547990		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000548567	ENST00000546809		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000548567	ENST00000308796		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000351328	ENST00000547990		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000351328	ENST00000546809		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000351328	ENST00000308796		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000542324	ENST00000547990		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000542324	ENST00000546809		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
intron-3UTR	ENST00000542324	ENST00000308796		TCGA	RV	HNSC	TCGA-DQ-7591-01A	CS	chr12	56685415	-	MUCL1	chr12	55251977	+
In-frame	ENST00000437600	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000437600	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000292538	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000292538	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000393824	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000393824	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000547394	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000547394	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000360264	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000360264	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000425244	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000425244	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000292535	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000292535	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000549414	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000549414	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000556210	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000556210	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000550008	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000550008	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
In-frame	ENST00000546411	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5CDS-5UTR	ENST00000546411	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
3UTR-3CDS	ENST00000560541	ENST00000423059		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
3UTR-5UTR	ENST00000560541	ENST00000480061		TCGA	RV	HNSC	TCGA-CV-6961-01A	CUX1	chr7	101713697	+	THSD7A	chr7	11676588	-
5UTR-3CDS	ENST00000473039	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5UTR-3CDS	ENST00000473039	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5UTR-intron	ENST00000473039	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
In-frame	ENST00000373624	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
In-frame	ENST00000373624	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5CDS-intron	ENST00000373624	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
intron-3CDS	ENST00000542603	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
intron-3CDS	ENST00000542603	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
intron-intron	ENST00000542603	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
In-frame	ENST00000394219	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
In-frame	ENST00000394219	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5CDS-intron	ENST00000394219	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
In-frame	ENST00000373620	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
In-frame	ENST00000373620	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5CDS-intron	ENST00000373620	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
Frame-shit	ENST00000394215	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
Frame-shit	ENST00000394215	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5CDS-intron	ENST00000394215	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
Frame-shit	ENST00000373618	ENST00000373203		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
Frame-shit	ENST00000373618	ENST00000344849		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5CDS-intron	ENST00000373618	ENST00000480266		TCGA	RV	HNSC	TCGA-CV-A45T-01A	DENND1A	chr9	126319849	-	ENG	chr9	130581111	-
5CDS-5UTR	ENST00000263697	ENST00000320567		TCGA	RV	HNSC	TCGA-DQ-7591-01A	DNAJC8	chr1	28559432	-	C1orf172	chr1	27278903	-
5UTR-5UTR	ENST00000489277	ENST00000320567		TCGA	RV	HNSC	TCGA-DQ-7591-01A	DNAJC8	chr1	28559432	-	C1orf172	chr1	27278903	-
Frame-shit	ENST00000455089	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000455089	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000455089	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000455089	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000342916	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000342916	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000342916	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000342916	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000344576	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000344576	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000344576	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000344576	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000420316	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000420316	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000420316	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000420316	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000275493	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000275493	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000275493	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000275493	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000442591	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
Frame-shit	ENST00000442591	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000442591	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000442591	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
3UTR-3CDS	ENST00000463948	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
3UTR-3CDS	ENST00000463948	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
3UTR-5UTR	ENST00000463948	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
3UTR-intron	ENST00000463948	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000454757	ENST00000442713		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000454757	ENST00000269445		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
intron-5UTR	ENST00000454757	ENST00000584977		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
intron-intron	ENST00000454757	ENST00000578396		TCGA	RV	HNSC	TCGA-BA-6872-01A	EGFR	chr7	55087058	+	DYM	chr18	46918015	-
In-frame	ENST00000377828	ENST00000375771		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
In-frame	ENST00000377828	ENST00000375766		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000377828	ENST00000400773		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000377828	ENST00000441801		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000377828	ENST00000332305		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-3UTR	ENST00000377828	ENST00000509138		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
In-frame	ENST00000461727	ENST00000375771		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
In-frame	ENST00000461727	ENST00000375766		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000461727	ENST00000400773		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000461727	ENST00000441801		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000461727	ENST00000332305		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-3UTR	ENST00000461727	ENST00000509138		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
3UTR-3CDS	ENST00000475228	ENST00000375771		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
3UTR-3CDS	ENST00000475228	ENST00000375766		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
3UTR-3CDS	ENST00000475228	ENST00000400773		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
3UTR-intron	ENST00000475228	ENST00000441801		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
3UTR-intron	ENST00000475228	ENST00000332305		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
3UTR-3UTR	ENST00000475228	ENST00000509138		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
In-frame	ENST00000416731	ENST00000375771		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
In-frame	ENST00000416731	ENST00000375766		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000416731	ENST00000400773		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000416731	ENST00000441801		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000416731	ENST00000332305		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-3UTR	ENST00000416731	ENST00000509138		TCGA	RV	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6517432	+	FBLIM1	chr1	16111043	+
5CDS-5UTR	ENST00000370310	ENST00000337338		TCGA	RV	HNSC	TCGA-BB-4223-01A	FAM69A	chr1	93426933	-	LRRC8D	chr1	90309197	+
5CDS-5UTR	ENST00000370310	ENST00000394593		TCGA	RV	HNSC	TCGA-BB-4223-01A	FAM69A	chr1	93426933	-	LRRC8D	chr1	90309197	+
Frame-shit	ENST00000380502	ENST00000371720		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
Frame-shit	ENST00000380502	ENST00000371717		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
5CDS-5UTR	ENST00000380502	ENST00000399219		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
5CDS-intron	ENST00000380502	ENST00000462616		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
intron-3CDS	ENST00000380496	ENST00000371720		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
intron-3CDS	ENST00000380496	ENST00000371717		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
intron-5UTR	ENST00000380496	ENST00000399219		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
intron-intron	ENST00000380496	ENST00000462616		TCGA	RV	HNSC	TCGA-DQ-7589-01A	HAUS6	chr9	19094315	-	PMPCA	chr9	139306942	+
intron-5UTR	ENST00000369609	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369609	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369609	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369607	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369607	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369607	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000369606	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000369606	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000369606	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000263518	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000263518	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000263518	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000470142	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000470142	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000470142	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000393549	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000393549	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000393549	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000455588	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000455588	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000455588	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000369602	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000369602	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
5UTR-5UTR	ENST00000369602	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369601	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369601	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000369601	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000492469	ENST00000496390		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000492469	ENST00000369575		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
intron-5UTR	ENST00000492469	ENST00000424127		TCGA	RV	HNSC	TCGA-CV-6953-01A	IKBKG	chrX	153775960	+	GAB3	chrX	153944604	-
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	HNSC	TCGA-CR-7399-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	HNSC	TCGA-CR-7399-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
5UTR-3CDS	ENST00000321599	ENST00000331456		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-3CDS	ENST00000321599	ENST00000469027		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-intron	ENST00000321599	ENST00000473863		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-3CDS	ENST00000395238	ENST00000331456		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-3CDS	ENST00000395238	ENST00000469027		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-intron	ENST00000395238	ENST00000473863		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-3CDS	ENST00000468463	ENST00000331456		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-3CDS	ENST00000468463	ENST00000469027		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5UTR-intron	ENST00000468463	ENST00000473863		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
intron-3CDS	ENST00000460540	ENST00000331456		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
intron-3CDS	ENST00000460540	ENST00000469027		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
intron-intron	ENST00000460540	ENST00000473863		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
intron-3CDS	ENST00000498149	ENST00000331456		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
intron-3CDS	ENST00000498149	ENST00000469027		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
intron-intron	ENST00000498149	ENST00000473863		TCGA	RV	HNSC	TCGA-CR-6488-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49877806	-
5CDS-5UTR	ENST00000283249	ENST00000474820		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000348849		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000409075		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000409289		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000392753		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000283249	ENST00000409972		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000474820		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000348849		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000409075		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000409289		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000392753		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-5UTR	ENST00000485635	ENST00000409972		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000474820		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000348849		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000409075		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000409289		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000392753		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000428609	ENST00000409972		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000474820		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000348849		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000409075		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000409289		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000392753		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409967	ENST00000409972		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000474820		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000348849		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000409075		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000409289		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000392753		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5CDS-5UTR	ENST00000409872	ENST00000409972		TCGA	RV	HNSC	TCGA-D6-8568-01A	ITGB6	chr2	161051880	-	RBMS1	chr2	161174738	-
5UTR-3CDS	ENST00000261425	ENST00000276033		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
5UTR-3CDS	ENST00000261425	ENST00000587091		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
5UTR-3CDS	ENST00000508137	ENST00000276033		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
5UTR-3CDS	ENST00000508137	ENST00000587091		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000504108	ENST00000276033		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000504108	ENST00000587091		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000359687	ENST00000276033		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000359687	ENST00000587091		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000381930	ENST00000276033		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000381930	ENST00000587091		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000261426	ENST00000276033		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
intron-3CDS	ENST00000261426	ENST00000587091		TCGA	RV	HNSC	TCGA-CV-7238-01A	KLHL5	chr4	39046716	+	SLC16A2	chrX	73740825	+
5CDS-intron	ENST00000393561	ENST00000419735		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393561	ENST00000477775		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393561	ENST00000318724		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393561	ENST00000478915		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393561	ENST00000388807		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393561	ENST00000472910		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000222399	ENST00000419735		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000222399	ENST00000477775		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000222399	ENST00000318724		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000222399	ENST00000478915		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000222399	ENST00000388807		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000222399	ENST00000472910		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393560	ENST00000419735		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393560	ENST00000477775		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393560	ENST00000318724		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393560	ENST00000478915		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393560	ENST00000388807		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
5CDS-intron	ENST00000393560	ENST00000472910		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000474380	ENST00000419735		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000474380	ENST00000477775		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000474380	ENST00000318724		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000474380	ENST00000478915		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000474380	ENST00000388807		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000474380	ENST00000472910		TCGA	RV	HNSC	TCGA-CN-5359-01A	LAMB1	chr7	107626467	-	ATXN7L1	chr7	105401909	-
In-frame	ENST00000264963	ENST00000327896		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000264963	ENST00000417561		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000264963	ENST00000490605		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000264963	ENST00000393526		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000264963	ENST00000470789		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000377079	ENST00000327896		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000377079	ENST00000417561		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000377079	ENST00000490605		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000377079	ENST00000393526		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000377079	ENST00000470789		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000426463	ENST00000327896		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000426463	ENST00000417561		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000426463	ENST00000490605		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000426463	ENST00000393526		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000426463	ENST00000470789		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000537039	ENST00000327896		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000537039	ENST00000417561		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
Frame-shit	ENST00000537039	ENST00000490605		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000537039	ENST00000393526		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000537039	ENST00000470789		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000534882	ENST00000327896		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000534882	ENST00000417561		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000534882	ENST00000490605		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000534882	ENST00000393526		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
5CDS-intron	ENST00000534882	ENST00000470789		TCGA	RV	HNSC	TCGA-CV-6936-01A	LMAN2L	chr2	97400146	-	FAM178B	chr2	97595057	-
In-frame	ENST00000397463	ENST00000409261		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000397463	ENST00000409213		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000397463	ENST00000405974		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000397463	ENST00000317721		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
5CDS-5UTR	ENST00000397463	ENST00000473859		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
Frame-shit	ENST00000345008	ENST00000409261		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
Frame-shit	ENST00000345008	ENST00000409213		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
Frame-shit	ENST00000345008	ENST00000405974		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
Frame-shit	ENST00000345008	ENST00000317721		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
5CDS-5UTR	ENST00000345008	ENST00000473859		TCGA	RV	HNSC	TCGA-BA-6872-01A	LYPD1	chr2	133425973	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000389794	ENST00000602281		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
In-frame	ENST00000389794	ENST00000539444		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000602873		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000366633		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000366636		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000535983		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000537876		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-5UTR	ENST00000389794	ENST00000366637		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-5UTR	ENST00000389794	ENST00000439617		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000427560		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389794	ENST00000317586		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
In-frame	ENST00000389793	ENST00000602281		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
In-frame	ENST00000389793	ENST00000539444		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000602873		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000366633		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000366636		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000535983		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000537876		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-5UTR	ENST00000389793	ENST00000366637		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-5UTR	ENST00000389793	ENST00000439617		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000427560		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5CDS-intron	ENST00000389793	ENST00000317586		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-3CDS	ENST00000536965	ENST00000602281		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-3CDS	ENST00000536965	ENST00000539444		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000602873		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000366633		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000366636		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000535983		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000537876		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-5UTR	ENST00000536965	ENST00000366637		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-5UTR	ENST00000536965	ENST00000439617		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000427560		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
intron-intron	ENST00000536965	ENST00000317586		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-3CDS	ENST00000473037	ENST00000602281		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-3CDS	ENST00000473037	ENST00000539444		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000602873		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000366633		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000366636		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000535983		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000537876		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-5UTR	ENST00000473037	ENST00000366637		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-5UTR	ENST00000473037	ENST00000439617		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000427560		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
5UTR-intron	ENST00000473037	ENST00000317586		TCGA	RV	HNSC	TCGA-CQ-6228-01A	LYST	chr1	235880012	-	DISC1	chr1	231930988	+
Frame-shit	ENST00000377182	ENST00000537855		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000379096		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000518937		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000519303		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000517427		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000520527		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000448733		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000379097		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
5CDS-intron	ENST00000377182	ENST00000523395		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-3CDS	ENST00000460688	ENST00000537855		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000379096		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000518937		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000519303		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000517427		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000520527		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000448733		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000379097		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-intron	ENST00000460688	ENST00000523395		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	TPD52	chr8	80870670	-
intron-3CDS	ENST00000383737	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000383737	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000383737	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
In-frame	ENST00000395734	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
In-frame	ENST00000395734	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
5CDS-intron	ENST00000395734	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
In-frame	ENST00000426837	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
In-frame	ENST00000426837	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
5CDS-intron	ENST00000426837	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
In-frame	ENST00000360240	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
In-frame	ENST00000360240	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
5CDS-intron	ENST00000360240	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000439356	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000439356	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000439356	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000264724	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000264724	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000264724	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000420772	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000420772	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000420772	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000441748	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000441748	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000441748	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000462206	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000462206	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000462206	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000434267	ENST00000361658		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-3CDS	ENST00000434267	ENST00000395544		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-intron	ENST00000434267	ENST00000580130		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	MAP4	chr3	47956307	-	ULK2	chr17	19681029	-
intron-5UTR	ENST00000367584	ENST00000429150		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000416623		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000392309		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000392307		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000437412		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000444202		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000493898		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000360537		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000367584	ENST00000354765		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000367584	ENST00000367572		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000367584	ENST00000367571		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000429150		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000416623		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000392309		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000392307		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000437412		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000444202		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000493898		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000360537		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000427704	ENST00000354765		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000427704	ENST00000367572		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000427704	ENST00000367571		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000429150		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000416623		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000392309		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000392307		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000437412		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000444202		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000493898		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000360537		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000305766	ENST00000354765		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000305766	ENST00000367572		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000305766	ENST00000367571		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000429150		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000416623		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000392309		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000392307		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000437412		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000444202		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000493898		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000360537		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000440869	ENST00000354765		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000440869	ENST00000367572		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000440869	ENST00000367571		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000429150		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000416623		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000392309		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000392307		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000437412		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000444202		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000493898		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000360537		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000367582	ENST00000354765		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000367582	ENST00000367572		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000367582	ENST00000367571		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000429150		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000416623		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000392309		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000392307		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000437412		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000444202		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000493898		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000360537		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000397980	ENST00000354765		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000397980	ENST00000367572		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000397980	ENST00000367571		TCGA	RV	HNSC	TCGA-BA-4076-01A	PHACTR2	chr6	143999346	+	PLAGL1	chr6	144290115	-
Frame-shit	ENST00000262741	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000262741	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000372006	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000372006	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000340332	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000340332	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000420542	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000420542	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000354242	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000354242	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
intron-3CDS	ENST00000540385	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
intron-5UTR	ENST00000540385	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000423209	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000423209	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
intron-3CDS	ENST00000488808	ENST00000359600		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
intron-5UTR	ENST00000488808	ENST00000464588		TCGA	RV	HNSC	TCGA-CV-7414-01A	PIK3R3	chr1	46597519	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000253925	ENST00000310137		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000253925	ENST00000393979		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000253925	ENST00000409372		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000253925	ENST00000443702		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000253925	ENST00000409738		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000253925	ENST00000461478		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000389547	ENST00000310137		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000389547	ENST00000393979		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000389547	ENST00000409372		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000389547	ENST00000443702		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000389547	ENST00000409738		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000389547	ENST00000461478		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000530548	ENST00000310137		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000530548	ENST00000393979		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000530548	ENST00000409372		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000530548	ENST00000443702		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
intron-intron	ENST00000530548	ENST00000409738		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000530548	ENST00000461478		TCGA	RV	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000380158	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000380158	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000380158	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000380158	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000380158	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-intron	ENST00000380158	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000264572	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000264572	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000264572	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000264572	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000264572	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-intron	ENST00000264572	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408927	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408927	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408927	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408927	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408927	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-intron	ENST00000408927	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
3UTR-3UTR	ENST00000512857	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
3UTR-3UTR	ENST00000512857	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
3UTR-3UTR	ENST00000512857	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
3UTR-3UTR	ENST00000512857	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
3UTR-3UTR	ENST00000512857	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
3UTR-intron	ENST00000512857	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000453712	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000453712	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000453712	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000453712	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000453712	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-intron	ENST00000453712	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000339360	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000339360	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000339360	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000339360	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000339360	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-intron	ENST00000339360	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408900	ENST00000515255		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408900	ENST00000394730		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408900	ENST00000515279		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408900	ENST00000360505		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-3UTR	ENST00000408900	ENST00000394728		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5CDS-intron	ENST00000408900	ENST00000507281		TCGA	RV	HNSC	TCGA-CR-7388-01A	RAP1GDS1	chr4	99273752	+	GSTCD	chr4	106766598	+
5UTR-3CDS	ENST00000393445	ENST00000186436		TCGA	RV	HNSC	TCGA-CV-A45R-01A	REV1	chr2	100106279	-	TMEM131	chr2	98392481	-
5UTR-intron	ENST00000393445	ENST00000425805		TCGA	RV	HNSC	TCGA-CV-A45R-01A	REV1	chr2	100106279	-	TMEM131	chr2	98392481	-
5UTR-3CDS	ENST00000258428	ENST00000186436		TCGA	RV	HNSC	TCGA-CV-A45R-01A	REV1	chr2	100106279	-	TMEM131	chr2	98392481	-
5UTR-intron	ENST00000258428	ENST00000425805		TCGA	RV	HNSC	TCGA-CV-A45R-01A	REV1	chr2	100106279	-	TMEM131	chr2	98392481	-
intron-3CDS	ENST00000465835	ENST00000186436		TCGA	RV	HNSC	TCGA-CV-A45R-01A	REV1	chr2	100106279	-	TMEM131	chr2	98392481	-
intron-intron	ENST00000465835	ENST00000425805		TCGA	RV	HNSC	TCGA-CV-A45R-01A	REV1	chr2	100106279	-	TMEM131	chr2	98392481	-
5CDS-intron	ENST00000382298	ENST00000262043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-intron	ENST00000382298	ENST00000509330		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-intron	ENST00000382298	ENST00000393387		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-3UTR	ENST00000382298	ENST00000420043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5UTR-intron	ENST00000402364	ENST00000262043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5UTR-intron	ENST00000402364	ENST00000509330		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5UTR-intron	ENST00000402364	ENST00000393387		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5UTR-3UTR	ENST00000402364	ENST00000420043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-intron	ENST00000382292	ENST00000262043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-intron	ENST00000382292	ENST00000509330		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-intron	ENST00000382292	ENST00000393387		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-3UTR	ENST00000382292	ENST00000420043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
intron-intron	ENST00000476776	ENST00000262043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
intron-intron	ENST00000476776	ENST00000509330		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
intron-intron	ENST00000476776	ENST00000393387		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
intron-3UTR	ENST00000476776	ENST00000420043		TCGA	RV	HNSC	TCGA-CV-7248-01A	SACS	chr13	23932474	-	PHF3	chr6	64487959	+
5CDS-intron	ENST00000339276	ENST00000264818		TCGA	RV	HNSC	TCGA-BA-6872-01A	SFN	chr1	27190947	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000339276	ENST00000524462		TCGA	RV	HNSC	TCGA-BA-6872-01A	SFN	chr1	27190947	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000339276	ENST00000525621		TCGA	RV	HNSC	TCGA-BA-6872-01A	SFN	chr1	27190947	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000339276	ENST00000529370		TCGA	RV	HNSC	TCGA-BA-6872-01A	SFN	chr1	27190947	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000339276	ENST00000529422		TCGA	RV	HNSC	TCGA-BA-6872-01A	SFN	chr1	27190947	+	TYK2	chr19	10491352	-
5UTR-3CDS	ENST00000380752	ENST00000380680		TCGA	RV	HNSC	TCGA-F7-A622-01A	SLC7A1	chr13	30127898	-	UBL3	chr13	30351400	-
intron-3CDS	ENST00000473577	ENST00000380680		TCGA	RV	HNSC	TCGA-F7-A622-01A	SLC7A1	chr13	30127898	-	UBL3	chr13	30351400	-
In-frame	ENST00000575142	ENST00000389840		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
In-frame	ENST00000575142	ENST00000585328		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
5CDS-5UTR	ENST00000575142	ENST00000586052		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
In-frame	ENST00000206020	ENST00000389840		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
In-frame	ENST00000206020	ENST00000585328		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
5CDS-5UTR	ENST00000206020	ENST00000586052		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
intron-3CDS	ENST00000573366	ENST00000389840		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
intron-3CDS	ENST00000573366	ENST00000585328		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
intron-5UTR	ENST00000573366	ENST00000586052		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
5UTR-3CDS	ENST00000571023	ENST00000389840		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
5UTR-3CDS	ENST00000571023	ENST00000585328		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
5UTR-5UTR	ENST00000571023	ENST00000586052		TCGA	RV	HNSC	TCGA-P3-A5QE-01A	SPAG7	chr17	4871015	-	DNAH17	chr17	76471915	-
In-frame	ENST00000383202	ENST00000310546		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000383202	ENST00000507895		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
In-frame	ENST00000236698	ENST00000310546		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000236698	ENST00000507895		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
Frame-shit	ENST00000434713	ENST00000310546		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000434713	ENST00000507895		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
intron-3CDS	ENST00000480733	ENST00000310546		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
intron-3UTR	ENST00000480733	ENST00000507895		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
Frame-shit	ENST00000536929	ENST00000310546		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000536929	ENST00000507895		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	STAG1	chr3	136117591	-	SPSB4	chr3	140865984	+
In-frame	ENST00000334398	ENST00000504387		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
In-frame	ENST00000334398	ENST00000379446		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
5CDS-intron	ENST00000334398	ENST00000379433		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
5CDS-intron	ENST00000334398	ENST00000508800		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
In-frame	ENST00000369439	ENST00000504387		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
In-frame	ENST00000369439	ENST00000379446		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
5CDS-intron	ENST00000369439	ENST00000379433		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
5CDS-intron	ENST00000369439	ENST00000508800		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
intron-3CDS	ENST00000461075	ENST00000504387		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
intron-3CDS	ENST00000461075	ENST00000379446		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
intron-intron	ENST00000461075	ENST00000379433		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
intron-intron	ENST00000461075	ENST00000508800		TCGA	RV	HNSC	TCGA-BB-7861-01A	TMLHE	chrX	154743647	-	NEDD9	chr6	11193925	-
In-frame	ENST00000389327	ENST00000522684		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000535192		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000519465		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000517887		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000521059		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000395218		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000538769		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000340930		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000519419		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389327	ENST00000430260		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389327	ENST00000519881		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389327	ENST00000520892		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389327	ENST00000519635		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389327	ENST00000517712		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389327	ENST00000522950		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389327	ENST00000520151		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000522684		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000535192		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000519465		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000517887		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000521059		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000395218		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000538769		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000340930		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000519419		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000389328	ENST00000430260		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389328	ENST00000519881		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389328	ENST00000520892		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389328	ENST00000519635		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389328	ENST00000517712		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389328	ENST00000522950		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000389328	ENST00000520151		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000522684		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000535192		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000519465		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000517887		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000521059		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000395218		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000538769		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000340930		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000519419		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000438773	ENST00000430260		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000438773	ENST00000519881		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000438773	ENST00000520892		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000438773	ENST00000519635		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000438773	ENST00000517712		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000438773	ENST00000522950		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
5CDS-intron	ENST00000438773	ENST00000520151		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000522684		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000535192		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000519465		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000517887		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000521059		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000395218		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000538769		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000340930		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000519419		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-3CDS	ENST00000522504	ENST00000430260		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-intron	ENST00000522504	ENST00000519881		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-intron	ENST00000522504	ENST00000520892		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-intron	ENST00000522504	ENST00000519635		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-intron	ENST00000522504	ENST00000517712		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-intron	ENST00000522504	ENST00000522950		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
intron-intron	ENST00000522504	ENST00000520151		TCGA	RV	HNSC	TCGA-CV-6953-01A	TRAPPC9	chr8	141415676	-	PTK2	chr8	141696793	-
In-frame	ENST00000393020	ENST00000541515		TCGA	RV	HNSC	TCGA-CR-6467-01A	TTC12	chr11	113215162	+	LUC7L2	chr7	139097297	+
In-frame	ENST00000529221	ENST00000541515		TCGA	RV	HNSC	TCGA-CR-6467-01A	TTC12	chr11	113215162	+	LUC7L2	chr7	139097297	+
In-frame	ENST00000314756	ENST00000541515		TCGA	RV	HNSC	TCGA-CR-6467-01A	TTC12	chr11	113215162	+	LUC7L2	chr7	139097297	+
In-frame	ENST00000483239	ENST00000541515		TCGA	RV	HNSC	TCGA-CR-6467-01A	TTC12	chr11	113215162	+	LUC7L2	chr7	139097297	+
3UTR-3CDS	ENST00000478125	ENST00000541515		TCGA	RV	HNSC	TCGA-CR-6467-01A	TTC12	chr11	113215162	+	LUC7L2	chr7	139097297	+
Frame-shit	ENST00000357056	ENST00000422945		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000556068		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000554442		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000328724		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000350249		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000445439		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000334743		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000557095		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000556260		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000556946		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000357056	ENST00000557714		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
Frame-shit	ENST00000328459	ENST00000422945		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000556068		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000554442		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000328724		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000350249		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000445439		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000334743		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000557095		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000556260		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000556946		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000328459	ENST00000557714		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000554654	ENST00000422945		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000556068		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000554442		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000328724		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000350249		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000445439		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000334743		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000557095		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000556260		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000556946		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000554654	ENST00000557714		TCGA	RV	HNSC	TCGA-CN-4735-01A	TTC7B	chr14	91196419	-	PPP2R5C	chr14	102323023	+
5CDS-5UTR	ENST00000211998	ENST00000369893		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
5CDS-3UTR	ENST00000211998	ENST00000602785		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
5CDS-5UTR	ENST00000372755	ENST00000369893		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
5CDS-3UTR	ENST00000372755	ENST00000602785		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
3UTR-5UTR	ENST00000478896	ENST00000369893		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
3UTR-3UTR	ENST00000478896	ENST00000602785		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
5CDS-5UTR	ENST00000417648	ENST00000369893		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
5CDS-3UTR	ENST00000417648	ENST00000602785		TCGA	RV	HNSC	TCGA-CN-A499-01A	VCL	chr10	75802911	+	SFXN2	chr10	104486369	+
In-frame	ENST00000326793	ENST00000265239		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
In-frame	ENST00000326793	ENST00000455191		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
Frame-shit	ENST00000326793	ENST00000453254		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
5CDS-intron	ENST00000326793	ENST00000480302		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
intron-3CDS	ENST00000472860	ENST00000265239		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
intron-3CDS	ENST00000472860	ENST00000455191		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
intron-3CDS	ENST00000472860	ENST00000453254		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
intron-intron	ENST00000472860	ENST00000480302		TCGA	RV	HNSC	TCGA-CV-5970-01A	ACAP2	chr3	195163524	-	IQCG	chr3	197640913	-
In-frame	ENST00000343823	ENST00000358138		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
5CDS-intron	ENST00000343823	ENST00000437935		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
In-frame	ENST00000250635	ENST00000358138		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
5CDS-intron	ENST00000250635	ENST00000437935		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
In-frame	ENST00000545394	ENST00000358138		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
5CDS-intron	ENST00000545394	ENST00000437935		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
In-frame	ENST00000428278	ENST00000358138		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
5CDS-intron	ENST00000428278	ENST00000437935		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
In-frame	ENST00000521652	ENST00000358138		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
5CDS-intron	ENST00000521652	ENST00000437935		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
3UTR-3CDS	ENST00000524263	ENST00000358138		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
3UTR-intron	ENST00000524263	ENST00000437935		TCGA	RV	HNSC	TCGA-CR-7364-01A	ASH2L	chr8	37968351	+	C8orf86	chr8	38374030	-
3UTR-intron	ENST00000331595	ENST00000342992		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000460472		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000589042		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000342175		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000359218		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000591111		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000360870		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000342992		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000460472		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000589042		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000342175		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000359218		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000591111		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000360870		TCGA	RV	HNSC	TCGA-DQ-5625-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5UTR-3CDS	ENST00000475962	ENST00000403807		TCGA	RV	HNSC	TCGA-CX-7086-01A	CBX7	chr22	39545794	-	VPREB1	chr22	22599358	+
5UTR-intron	ENST00000475962	ENST00000302273		TCGA	RV	HNSC	TCGA-CX-7086-01A	CBX7	chr22	39545794	-	VPREB1	chr22	22599358	+
In-frame	ENST00000216133	ENST00000403807		TCGA	RV	HNSC	TCGA-CX-7086-01A	CBX7	chr22	39545794	-	VPREB1	chr22	22599358	+
5CDS-intron	ENST00000216133	ENST00000302273		TCGA	RV	HNSC	TCGA-CX-7086-01A	CBX7	chr22	39545794	-	VPREB1	chr22	22599358	+
In-frame	ENST00000401405	ENST00000403807		TCGA	RV	HNSC	TCGA-CX-7086-01A	CBX7	chr22	39545794	-	VPREB1	chr22	22599358	+
5CDS-intron	ENST00000401405	ENST00000302273		TCGA	RV	HNSC	TCGA-CX-7086-01A	CBX7	chr22	39545794	-	VPREB1	chr22	22599358	+
intron-intron	ENST00000320895	ENST00000371917		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000320895	ENST00000493140		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000507807	ENST00000371917		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000507807	ENST00000493140		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000320927	ENST00000371917		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000320927	ENST00000493140		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000506641	ENST00000371917		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000506641	ENST00000493140		TCGA	RV	HNSC	TCGA-CN-6020-01A	CLPTM1L	chr5	1317983	-	ARFGEF2	chr20	47615777	+
5CDS-5UTR	ENST00000261798	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
5CDS-5UTR	ENST00000377843	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
5UTR-5UTR	ENST00000515435	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
5UTR-5UTR	ENST00000504676	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
5CDS-5UTR	ENST00000515768	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
intron-5UTR	ENST00000606719	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
intron-5UTR	ENST00000606299	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
5CDS-5UTR	ENST00000515748	ENST00000333677		TCGA	RV	HNSC	TCGA-BB-A5HZ-01A	CSNK1A1	chr5	148929638	-	ARHGEF37	chr5	148977322	+
In-frame	ENST00000250454	ENST00000263966		TCGA	RV	HNSC	TCGA-BB-4217-01A	EAPP	chr14	34993903	-	USP13	chr3	179447977	+
5CDS-3UTR	ENST00000250454	ENST00000482333		TCGA	RV	HNSC	TCGA-BB-4217-01A	EAPP	chr14	34993903	-	USP13	chr3	179447977	+
5CDS-3UTR	ENST00000250454	ENST00000496897		TCGA	RV	HNSC	TCGA-BB-4217-01A	EAPP	chr14	34993903	-	USP13	chr3	179447977	+
5CDS-intron	ENST00000309311	ENST00000513761		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000347613		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000360642		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000504131		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000309311	ENST00000506924		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000513761		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000347613		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000360642		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000504131		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000600720	ENST00000506924		TCGA	RV	HNSC	TCGA-BB-4223-01A	EEF2	chr19	3976055	-	CLCN3	chr4	170623929	+
In-frame	ENST00000378204	ENST00000409003		TCGA	RV	HNSC	TCGA-CN-5370-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000314727		TCGA	RV	HNSC	TCGA-CN-5370-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	HNSC	TCGA-CN-5370-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
In-frame	ENST00000257209	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000257209	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
In-frame	ENST00000445677	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000445677	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
In-frame	ENST00000590592	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000590592	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
In-frame	ENST00000359247	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000359247	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
intron-3CDS	ENST00000591635	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
intron-3UTR	ENST00000591635	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
intron-3CDS	ENST00000592128	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
intron-3UTR	ENST00000592128	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
intron-3CDS	ENST00000587493	ENST00000261326		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
intron-3UTR	ENST00000587493	ENST00000588132		TCGA	RV	HNSC	TCGA-CV-6954-01A	FHOD3	chr18	33952707	+	MOCOS	chr18	33836931	+
5CDS-5UTR	ENST00000257209	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-intron	ENST00000257209	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-5UTR	ENST00000257209	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-5UTR	ENST00000445677	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-intron	ENST00000445677	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-5UTR	ENST00000445677	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-5UTR	ENST00000590592	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-intron	ENST00000590592	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
5CDS-5UTR	ENST00000590592	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000359247	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-intron	ENST00000359247	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000359247	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000591635	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-intron	ENST00000591635	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000591635	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000592128	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-intron	ENST00000592128	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000592128	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000587493	ENST00000528170		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-intron	ENST00000587493	ENST00000337911		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
intron-5UTR	ENST00000587493	ENST00000405633		TCGA	RV	HNSC	TCGA-CV-5440-01A	FHOD3	chr18	34267141	+	MS4A15	chr11	60531179	+
In-frame	ENST00000254108	ENST00000268281		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000254108	ENST00000418068		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000254108	ENST00000569305		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000380244	ENST00000268281		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000380244	ENST00000418068		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000380244	ENST00000569305		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000568685	ENST00000268281		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000568685	ENST00000418068		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
In-frame	ENST00000568685	ENST00000569305		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
intron-3CDS	ENST00000474990	ENST00000268281		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
intron-3CDS	ENST00000474990	ENST00000418068		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
intron-3CDS	ENST00000474990	ENST00000569305		TCGA	RV	HNSC	TCGA-CV-6941-01A	FUS	chr16	31195717	+	PRSS36	chr16	31161052	-
5CDS-intron	ENST00000053867	ENST00000513761		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000053867	ENST00000347613		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000053867	ENST00000360642		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000053867	ENST00000504131		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000053867	ENST00000506924		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589265	ENST00000513761		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589265	ENST00000347613		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589265	ENST00000360642		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589265	ENST00000504131		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589265	ENST00000506924		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589923	ENST00000513761		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589923	ENST00000347613		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589923	ENST00000360642		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589923	ENST00000504131		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000589923	ENST00000506924		TCGA	RV	HNSC	TCGA-CV-7090-01A	GRN	chr17	42430470	+	CLCN3	chr4	170623929	+
5CDS-3UTR	ENST00000248553	ENST00000355327		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000248553	ENST00000261862		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000248553	ENST00000357769		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000248553	ENST00000567838		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000429938	ENST00000355327		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000429938	ENST00000261862		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000429938	ENST00000357769		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000429938	ENST00000567838		TCGA	RV	HNSC	TCGA-HD-7753-01A	HSPB1	chr7	75933612	+	THSD4	chr15	72072881	+
Frame-shit	ENST00000377967	ENST00000366756		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	KDM6A	chrX	44833960	+	DLL1	chr6	170595386	-
Frame-shit	ENST00000382899	ENST00000366756		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	KDM6A	chrX	44833960	+	DLL1	chr6	170595386	-
Frame-shit	ENST00000536777	ENST00000366756		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	KDM6A	chrX	44833960	+	DLL1	chr6	170595386	-
Frame-shit	ENST00000543216	ENST00000366756		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	KDM6A	chrX	44833960	+	DLL1	chr6	170595386	-
intron-3CDS	ENST00000479423	ENST00000366756		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	KDM6A	chrX	44833960	+	DLL1	chr6	170595386	-
5CDS-intron	ENST00000336861	ENST00000216297		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000336861	ENST00000555943		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000246635	ENST00000216297		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000246635	ENST00000555943		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000587544	ENST00000216297		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000587544	ENST00000555943		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000587118	ENST00000216297		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000587118	ENST00000555943		TCGA	RV	HNSC	TCGA-CN-6012-01A	KRT13	chr17	39657233	-	SUPT16H	chr14	21829491	-
intron-3CDS	ENST00000375258	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	METTL8	chr2	172271113	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000463392	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	METTL8	chr2	172271113	-	RFTN2	chr2	198437004	-
5UTR-3CDS	ENST00000216181	ENST00000216185		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5UTR-3CDS	ENST00000216181	ENST00000416967		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5UTR-5UTR	ENST00000216181	ENST00000487725		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5UTR-5UTR	ENST00000216181	ENST00000403313		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000475726	ENST00000216185		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000475726	ENST00000416967		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000475726	ENST00000487725		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000475726	ENST00000403313		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000401701	ENST00000216185		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000401701	ENST00000416967		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000401701	ENST00000487725		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000401701	ENST00000403313		TCGA	RV	HNSC	TCGA-CN-A49A-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5CDS-intron	ENST00000282516	ENST00000282469		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000282516	ENST00000509059		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000282516	ENST00000356031		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000282516	ENST00000440995		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000282516	ENST00000303129		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000448238	ENST00000282469		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000448238	ENST00000509059		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000448238	ENST00000356031		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000448238	ENST00000440995		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-intron	ENST00000448238	ENST00000303129		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000282469		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000509059		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000356031		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000440995		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000303129		TCGA	RV	HNSC	TCGA-CV-7418-01A	NIPBL	chr5	36958333	+	SPEF2	chr5	35753726	+
5CDS-5UTR	ENST00000353265	ENST00000308064		TCGA	RV	HNSC	TCGA-DQ-7591-01A	PARD6G	chr18	77960593	-	CHST1	chr11	45674156	-
5CDS-intron	ENST00000353265	ENST00000533673		TCGA	RV	HNSC	TCGA-DQ-7591-01A	PARD6G	chr18	77960593	-	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000470488	ENST00000308064		TCGA	RV	HNSC	TCGA-DQ-7591-01A	PARD6G	chr18	77960593	-	CHST1	chr11	45674156	-
5CDS-intron	ENST00000470488	ENST00000533673		TCGA	RV	HNSC	TCGA-DQ-7591-01A	PARD6G	chr18	77960593	-	CHST1	chr11	45674156	-
In-frame	ENST00000381989	ENST00000357250		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
5CDS-intron	ENST00000381989	ENST00000320755		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
5CDS-intron	ENST00000381989	ENST00000370499		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
5CDS-intron	ENST00000381989	ENST00000489611		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
5CDS-intron	ENST00000381989	ENST00000370496		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
intron-3CDS	ENST00000480576	ENST00000357250		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000320755		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000370499		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000489611		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000370496		TCGA	RV	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25073439	-	COL9A1	chr6	70993523	-
5CDS-intron	ENST00000345988	ENST00000367545		TCGA	RV	HNSC	TCGA-CV-7430-01A	PPL	chr16	4932508	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000345988	ENST00000367526		TCGA	RV	HNSC	TCGA-CV-7430-01A	PPL	chr16	4932508	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000345988	ENST00000480333		TCGA	RV	HNSC	TCGA-CV-7430-01A	PPL	chr16	4932508	-	UTRN	chr6	144665237	+
intron-intron	ENST00000590782	ENST00000367545		TCGA	RV	HNSC	TCGA-CV-7430-01A	PPL	chr16	4932508	-	UTRN	chr6	144665237	+
intron-intron	ENST00000590782	ENST00000367526		TCGA	RV	HNSC	TCGA-CV-7430-01A	PPL	chr16	4932508	-	UTRN	chr6	144665237	+
intron-intron	ENST00000590782	ENST00000480333		TCGA	RV	HNSC	TCGA-CV-7430-01A	PPL	chr16	4932508	-	UTRN	chr6	144665237	+
In-frame	ENST00000373635	ENST00000505330		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000504381		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000507488		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000393221		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000533801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000510168		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000508532		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000504948		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000513801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000328560		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000428331		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000359644		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000373635	ENST00000422190		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
5CDS-intron	ENST00000373635	ENST00000509150		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000505330		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000504381		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000507488		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000393221		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000533801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000510168		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000508532		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000504948		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000513801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000328560		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000428331		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000359644		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000308696	ENST00000422190		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
5CDS-intron	ENST00000308696	ENST00000509150		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000505330		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000504381		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000507488		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000393221		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000533801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000510168		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000508532		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000504948		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000513801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000328560		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000428331		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000359644		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
In-frame	ENST00000409643	ENST00000422190		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
5CDS-intron	ENST00000409643	ENST00000509150		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000505330		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000504381		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000507488		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000393221		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000533801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000510168		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000508532		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000504948		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000513801		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000328560		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000428331		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000359644		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000488354	ENST00000422190		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-intron	ENST00000488354	ENST00000509150		TCGA	RV	HNSC	TCGA-CV-7177-01A	PSMD1	chr2	232011070	+	ATP2C1	chr3	130659474	+
intron-3CDS	ENST00000356415	ENST00000369478		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000356415	ENST00000369477		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
5UTR-3CDS	ENST00000436150	ENST00000369478		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
5UTR-3CDS	ENST00000436150	ENST00000369477		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
5UTR-3CDS	ENST00000369709	ENST00000369478		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
5UTR-3CDS	ENST00000369709	ENST00000369477		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000545460	ENST00000369478		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000545460	ENST00000369477		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000494982	ENST00000369478		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000494982	ENST00000369477		TCGA	RV	HNSC	TCGA-HD-7831-01A	RAP1A	chr1	112162556	+	CD2	chr1	117297253	+
Frame-shit	ENST00000293677	ENST00000160262		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	RAVER1	chr19	10443965	-	ICAM3	chr19	10449624	-
5CDS-5UTR	ENST00000293677	ENST00000589261		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	RAVER1	chr19	10443965	-	ICAM3	chr19	10449624	-
Frame-shit	ENST00000399799	ENST00000306851		TCGA	RV	HNSC	TCGA-CV-6953-01A	ROCK1	chr18	18690779	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000399799	ENST00000237019		TCGA	RV	HNSC	TCGA-CV-6953-01A	ROCK1	chr18	18690779	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000399799	ENST00000383131		TCGA	RV	HNSC	TCGA-CV-6953-01A	ROCK1	chr18	18690779	-	B4GALT6	chr18	29246335	-
In-frame	ENST00000270162	ENST00000270112		TCGA	RV	HNSC	TCGA-CR-7372-01A	SIK1	chr21	44845287	-	HUNK	chr21	33312477	+
5CDS-intron	ENST00000270162	ENST00000465574		TCGA	RV	HNSC	TCGA-CR-7372-01A	SIK1	chr21	44845287	-	HUNK	chr21	33312477	+
5CDS-intron	ENST00000316999	ENST00000257765		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000316999	ENST00000370384		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-5UTR	ENST00000316999	ENST00000484801		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000370452	ENST00000257765		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000370452	ENST00000370384		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-5UTR	ENST00000370452	ENST00000484801		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000370455	ENST00000257765		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000370455	ENST00000370384		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-5UTR	ENST00000370455	ENST00000484801		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
intron-intron	ENST00000422334	ENST00000257765		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
intron-intron	ENST00000422334	ENST00000370384		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
intron-5UTR	ENST00000422334	ENST00000484801		TCGA	RV	HNSC	TCGA-F7-A623-01A	SMAP1	chr6	71508440	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000361368	ENST00000483612		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000361368	ENST00000292401		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000361368	ENST00000411734		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000361125	ENST00000483612		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000361125	ENST00000292401		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000361125	ENST00000411734		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
intron-intron	ENST00000480055	ENST00000483612		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
intron-intron	ENST00000480055	ENST00000292401		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
intron-intron	ENST00000480055	ENST00000411734		TCGA	RV	HNSC	TCGA-CN-6018-01A	SMURF1	chr7	98741349	-	AZGP1	chr7	99569629	-
In-frame	ENST00000374232	ENST00000380647		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
In-frame	ENST00000374232	ENST00000262360		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
In-frame	ENST00000374232	ENST00000425824		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
5CDS-intron	ENST00000374232	ENST00000380641		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
5CDS-intron	ENST00000374232	ENST00000484374		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
intron-3CDS	ENST00000604751	ENST00000380647		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
intron-3CDS	ENST00000604751	ENST00000262360		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
intron-3CDS	ENST00000604751	ENST00000425824		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
intron-intron	ENST00000604751	ENST00000380641		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
intron-intron	ENST00000604751	ENST00000484374		TCGA	RV	HNSC	TCGA-DQ-7589-01A	SNX30	chr9	115513437	+	CNTLN	chr9	17484293	+
Frame-shit	ENST00000337768	ENST00000302188		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000337768	ENST00000444339		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
Frame-shit	ENST00000406540	ENST00000302188		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000406540	ENST00000444339		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
In-frame	ENST00000405491	ENST00000302188		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000405491	ENST00000444339		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
Frame-shit	ENST00000464789	ENST00000302188		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000464789	ENST00000444339		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
intron-3CDS	ENST00000404798	ENST00000302188		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
intron-intron	ENST00000404798	ENST00000444339		TCGA	RV	HNSC	TCGA-CV-7413-01A	SUPT7L	chr2	27883851	-	RBKS	chr2	28004655	-
In-frame	ENST00000215790	ENST00000396504		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000215790	ENST00000355209		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000215790	ENST00000337566		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000215790	ENST00000407461		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
5CDS-intron	ENST00000215790	ENST00000420561		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000403477	ENST00000396504		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000403477	ENST00000355209		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000403477	ENST00000337566		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
In-frame	ENST00000403477	ENST00000407461		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
5CDS-intron	ENST00000403477	ENST00000420561		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
Frame-shit	ENST00000403362	ENST00000396504		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
Frame-shit	ENST00000403362	ENST00000355209		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
Frame-shit	ENST00000403362	ENST00000337566		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
Frame-shit	ENST00000403362	ENST00000407461		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
5CDS-intron	ENST00000403362	ENST00000420561		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
intron-3CDS	ENST00000490449	ENST00000396504		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
intron-3CDS	ENST00000490449	ENST00000355209		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
intron-3CDS	ENST00000490449	ENST00000337566		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
intron-3CDS	ENST00000490449	ENST00000407461		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
intron-intron	ENST00000490449	ENST00000420561		TCGA	RV	HNSC	TCGA-CX-7086-01A	TBC1D10A	chr22	30695433	-	POLR3H	chr22	41936799	-
intron-3UTR	ENST00000346141	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000346141	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000346141	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000346141	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-intron	ENST00000346141	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000325752	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000325752	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000325752	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000325752	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-intron	ENST00000325752	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000340993	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000340993	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000340993	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000340993	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-intron	ENST00000340993	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000394239	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000394239	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000394239	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000394239	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-intron	ENST00000394239	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000592426	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000592426	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000592426	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000592426	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-intron	ENST00000592426	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000376094	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000376094	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000376094	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-3UTR	ENST00000376094	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5CDS-intron	ENST00000376094	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000539018	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000539018	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000539018	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-3UTR	ENST00000539018	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
intron-intron	ENST00000539018	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5UTR-3UTR	ENST00000591611	ENST00000538935		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5UTR-3UTR	ENST00000591611	ENST00000359570		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5UTR-3UTR	ENST00000591611	ENST00000450745		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5UTR-3UTR	ENST00000591611	ENST00000455936		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
5UTR-intron	ENST00000591611	ENST00000474278		TCGA	RV	HNSC	TCGA-BB-4217-01A	TUBD1	chr17	57963444	-	INPP5D	chr2	234091056	+
In-frame	ENST00000353024	ENST00000271636		TCGA	RV	HNSC	TCGA-CV-7261-01A	TUFT1	chr1	151512902	+	CGN	chr1	151509206	+
In-frame	ENST00000392712	ENST00000271636		TCGA	RV	HNSC	TCGA-CV-7261-01A	TUFT1	chr1	151512902	+	CGN	chr1	151509206	+
In-frame	ENST00000368849	ENST00000271636		TCGA	RV	HNSC	TCGA-CV-7261-01A	TUFT1	chr1	151512902	+	CGN	chr1	151509206	+
In-frame	ENST00000368848	ENST00000271636		TCGA	RV	HNSC	TCGA-CV-7261-01A	TUFT1	chr1	151512902	+	CGN	chr1	151509206	+
5UTR-3CDS	ENST00000538902	ENST00000271636		TCGA	RV	HNSC	TCGA-CV-7261-01A	TUFT1	chr1	151512902	+	CGN	chr1	151509206	+
3UTR-3CDS	ENST00000465952	ENST00000267163		TCGA	RV	HNSC	TCGA-D6-6827-01A	USPL1	chr13	31192193	+	RB1	chr13	48916735	+
3UTR-intron	ENST00000465952	ENST00000484879		TCGA	RV	HNSC	TCGA-D6-6827-01A	USPL1	chr13	31192193	+	RB1	chr13	48916735	+
5UTR-3CDS	ENST00000255304	ENST00000267163		TCGA	RV	HNSC	TCGA-D6-6827-01A	USPL1	chr13	31192193	+	RB1	chr13	48916735	+
5UTR-intron	ENST00000255304	ENST00000484879		TCGA	RV	HNSC	TCGA-D6-6827-01A	USPL1	chr13	31192193	+	RB1	chr13	48916735	+
intron-3CDS	ENST00000466398	ENST00000424785		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000466398	ENST00000464248		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000466398	ENST00000434643		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
5UTR-3CDS	ENST00000410066	ENST00000424785		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
5UTR-5UTR	ENST00000410066	ENST00000464248		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
5UTR-5UTR	ENST00000410066	ENST00000434643		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-3CDS	ENST00000336917	ENST00000424785		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000336917	ENST00000464248		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000336917	ENST00000434643		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-3CDS	ENST00000409343	ENST00000424785		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000409343	ENST00000464248		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000409343	ENST00000434643		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-3CDS	ENST00000409692	ENST00000424785		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000409692	ENST00000464248		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
intron-5UTR	ENST00000409692	ENST00000434643		TCGA	RV	HNSC	TCGA-CV-7235-01A	ZNF385B	chr2	180725828	-	FKBP7	chr2	179330658	-
5CDS-intron	ENST00000373953	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000373953	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000373953	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000440666	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000440666	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000440666	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000339411	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000339411	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000339411	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000482946	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000482946	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000482946	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35263760	+	ANKS1A	chr6	34977682	+
intron-3CDS	ENST00000318560	ENST00000372358		TCGA	RV	HNSC	TCGA-CV-6950-01A	ABL1	chr9	133589842	+	EXOSC2	chr9	133570879	+
intron-3CDS	ENST00000318560	ENST00000546165		TCGA	RV	HNSC	TCGA-CV-6950-01A	ABL1	chr9	133589842	+	EXOSC2	chr9	133570879	+
intron-3CDS	ENST00000318560	ENST00000372352		TCGA	RV	HNSC	TCGA-CV-6950-01A	ABL1	chr9	133589842	+	EXOSC2	chr9	133570879	+
intron-3CDS	ENST00000318560	ENST00000372351		TCGA	RV	HNSC	TCGA-CV-6950-01A	ABL1	chr9	133589842	+	EXOSC2	chr9	133570879	+
intron-intron	ENST00000318560	ENST00000467138		TCGA	RV	HNSC	TCGA-CV-6950-01A	ABL1	chr9	133589842	+	EXOSC2	chr9	133570879	+
5UTR-3CDS	ENST00000560302	ENST00000422057		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000560302	ENST00000317318		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000560302	ENST00000423270		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000560302	ENST00000559447		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-3CDS	ENST00000394518	ENST00000422057		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000394518	ENST00000317318		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000394518	ENST00000423270		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000394518	ENST00000559447		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-3CDS	ENST00000361243	ENST00000422057		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000361243	ENST00000317318		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000361243	ENST00000423270		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5UTR-intron	ENST00000361243	ENST00000559447		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-3CDS	ENST00000560579	ENST00000422057		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-intron	ENST00000560579	ENST00000317318		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-intron	ENST00000560579	ENST00000423270		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-intron	ENST00000560579	ENST00000559447		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-3CDS	ENST00000394510	ENST00000422057		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-intron	ENST00000394510	ENST00000317318		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-intron	ENST00000394510	ENST00000423270		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
intron-intron	ENST00000394510	ENST00000559447		TCGA	RV	HNSC	TCGA-CQ-6219-01A	AKAP13	chr15	85924029	+	RFX7	chr15	56379707	-
5CDS-5UTR	ENST00000379887	ENST00000542035		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000379887	ENST00000544411		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000379887	ENST00000340912		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000379887	ENST00000544171		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000562891	ENST00000542035		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000562891	ENST00000544411		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000562891	ENST00000340912		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
intron-5UTR	ENST00000562891	ENST00000544171		TCGA	RV	HNSC	TCGA-UF-A7JK-01A	ARIH1	chr15	72847704	+	SENP8	chr15	72431918	+
5UTR-intron	ENST00000548446	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000548446	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000548446	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000548446	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000548446	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000420353	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000420353	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000420353	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000420353	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000420353	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000415113	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000415113	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000415113	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000415113	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000415113	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000456903	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000456903	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000456903	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000456903	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-5UTR	ENST00000456903	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000548118	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000548118	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000548118	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000548118	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-5UTR	ENST00000548118	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000591397	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000591397	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000591397	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000591397	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000591397	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000328463	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000328463	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000328463	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000328463	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-5UTR	ENST00000328463	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000546661	ENST00000550241		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000546661	ENST00000602871		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000546661	ENST00000394349		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000546661	ENST00000549164		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
intron-5UTR	ENST00000546661	ENST00000338662		TCGA	RV	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54070182	-
In-frame	ENST00000399782	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000399782	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000399782	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000399782	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-intron	ENST00000399782	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-intron	ENST00000399782	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000317582	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000317582	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000317582	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000317582	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-intron	ENST00000317582	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-intron	ENST00000317582	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5UTR-3CDS	ENST00000543133	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5UTR-3CDS	ENST00000543133	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5UTR-3CDS	ENST00000543133	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5UTR-3CDS	ENST00000543133	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5UTR-intron	ENST00000543133	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5UTR-intron	ENST00000543133	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000538149	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000538149	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000538149	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000538149	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000538149	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000538149	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000337612	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000337612	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000337612	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000337612	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000337612	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000337612	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000493680	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000493680	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000493680	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
In-frame	ENST00000493680	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-intron	ENST00000493680	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-intron	ENST00000493680	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000355028	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000355028	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000355028	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000355028	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000355028	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000355028	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000418951	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000418951	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000418951	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000418951	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000418951	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000418951	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000485631	ENST00000437079		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000485631	ENST00000287546		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000485631	ENST00000436792		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-3CDS	ENST00000485631	ENST00000446204		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000485631	ENST00000424463		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
intron-intron	ENST00000485631	ENST00000463687		TCGA	RV	HNSC	TCGA-T3-A92N-01A	BCL2L13	chr22	18178976	+	VPS8	chr3	184616353	+
5CDS-5UTR	ENST00000305877	ENST00000413389		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000305877	ENST00000326010		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000305877	ENST00000382760		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000305877	ENST00000498140		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-5UTR	ENST00000359540	ENST00000413389		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000359540	ENST00000326010		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000359540	ENST00000382760		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000359540	ENST00000498140		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-5UTR	ENST00000398512	ENST00000413389		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000398512	ENST00000326010		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000398512	ENST00000382760		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
5CDS-intron	ENST00000398512	ENST00000498140		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
intron-5UTR	ENST00000436990	ENST00000413389		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
intron-intron	ENST00000436990	ENST00000326010		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
intron-intron	ENST00000436990	ENST00000382760		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
intron-intron	ENST00000436990	ENST00000498140		TCGA	RV	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24890077	+
In-frame	ENST00000549621	ENST00000251808		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
5CDS-5UTR	ENST00000549621	ENST00000395927		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
5CDS-intron	ENST00000549621	ENST00000517674		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
In-frame	ENST00000548278	ENST00000251808		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
5CDS-5UTR	ENST00000548278	ENST00000395927		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
5CDS-intron	ENST00000548278	ENST00000517674		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
In-frame	ENST00000552495	ENST00000251808		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
5CDS-5UTR	ENST00000552495	ENST00000395927		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
5CDS-intron	ENST00000552495	ENST00000517674		TCGA	RV	HNSC	TCGA-CV-7253-01A	C12orf52	chr12	113624853	+	GRHL2	chr8	102555469	+
In-frame	ENST00000568224	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000568224	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
In-frame	ENST00000535392	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000535392	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000359984	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000359984	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
In-frame	ENST00000360019	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000360019	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000569430	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000569430	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
In-frame	ENST00000333496	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000333496	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
In-frame	ENST00000355477	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000355477	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
In-frame	ENST00000354630	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000354630	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000357806	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000357806	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000357857	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000357857	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
In-frame	ENST00000567963	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000567963	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000395653	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000395653	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000565316	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
5CDS-3UTR	ENST00000565316	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
intron-3CDS	ENST00000357076	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
intron-3UTR	ENST00000357076	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
intron-3CDS	ENST00000567160	ENST00000333334		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
intron-3UTR	ENST00000567160	ENST00000556865		TCGA	RV	HNSC	TCGA-CR-5247-01A	CLN3	chr16	28495327	-	C15orf32	chr15	93043588	+
Frame-shit	ENST00000302177	ENST00000553525		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000555571		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000553530		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000556437		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000355512		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000406236		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000404301		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000407322		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000402788		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000302177	ENST00000343854		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
5CDS-5UTR	ENST00000302177	ENST00000434263		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
5CDS-intron	ENST00000302177	ENST00000554782		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
5CDS-3UTR	ENST00000302177	ENST00000553690		TCGA	RV	HNSC	TCGA-QK-A8Z7-01A	FOXA3	chr19	46367783	+	RGS6	chr14	72921236	+
5UTR-3CDS	ENST00000399932	ENST00000293872		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000399932	ENST00000337351		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000399932	ENST00000397783		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000399932	ENST00000397780		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-intron	ENST00000399932	ENST00000494366		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301679	ENST00000293872		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301679	ENST00000337351		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301679	ENST00000397783		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301679	ENST00000397780		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-intron	ENST00000301679	ENST00000494366		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000442458	ENST00000293872		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000442458	ENST00000337351		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000442458	ENST00000397783		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000442458	ENST00000397780		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-intron	ENST00000442458	ENST00000494366		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301678	ENST00000293872		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301678	ENST00000337351		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301678	ENST00000397783		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000301678	ENST00000397780		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-intron	ENST00000301678	ENST00000494366		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000450082	ENST00000293872		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000450082	ENST00000337351		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000450082	ENST00000397783		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000450082	ENST00000397780		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-intron	ENST00000450082	ENST00000494366		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000600536	ENST00000293872		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000600536	ENST00000337351		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000600536	ENST00000397783		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-3CDS	ENST00000600536	ENST00000397780		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5UTR-intron	ENST00000600536	ENST00000494366		TCGA	RV	HNSC	TCGA-CV-6940-01A	ITFG3	chr16	299653	+	LUC7L	chr16	258187	-
5CDS-intron	ENST00000341776	ENST00000397022		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000353147		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000352392		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000349999		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000317896		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000357618		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000470149		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000336625		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000488199		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000461397		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000341776	ENST00000309234		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000397022		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000353147		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000352392		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000349999		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000317896		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000357618		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000470149		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000336625		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000488199		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000461397		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5UTR-intron	ENST00000397311	ENST00000309234		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000397022		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000353147		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000352392		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000349999		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000317896		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000357618		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000470149		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000336625		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000488199		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000461397		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
5CDS-intron	ENST00000541660	ENST00000309234		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000397022		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000353147		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000352392		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000349999		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000317896		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000357618		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000470149		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000336625		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000488199		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000461397		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
intron-intron	ENST00000474854	ENST00000309234		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091069	+
In-frame	ENST00000448637	ENST00000319332		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000448637	ENST00000427335		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000312675	ENST00000319332		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000312675	ENST00000427335		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
In-frame	ENST00000543006	ENST00000319332		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
5CDS-5UTR	ENST00000543006	ENST00000427335		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
3UTR-3CDS	ENST00000471917	ENST00000319332		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
3UTR-5UTR	ENST00000471917	ENST00000427335		TCGA	RV	HNSC	TCGA-CV-6941-01A	LPP	chr3	188327632	+	LEPREL1	chr3	189713231	-
Frame-shit	ENST00000355117	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000355117	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000355117	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000355117	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000355117	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000355117	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000540841	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540841	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540841	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540841	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540841	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000540841	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000540178	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000540178	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000360409	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000360409	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000417189	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000417189	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000417189	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000417189	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000417189	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000417189	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000357118	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357118	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357118	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357118	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357118	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000357118	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000357785	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000357785	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000272849	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000272849	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000272849	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000272849	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000272849	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000272849	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000412873	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000412873	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000412873	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000412873	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000412873	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000412873	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000485684	ENST00000406610		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000462231		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000349953		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000358768		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000351153		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000485684	ENST00000488622		TCGA	RV	HNSC	TCGA-CV-7090-01A	NRP2	chr2	206548087	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000287437	ENST00000337019		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
Frame-shit	ENST00000287437	ENST00000366889		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
Frame-shit	ENST00000287437	ENST00000366888		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
5CDS-3UTR	ENST00000287437	ENST00000542669		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
Frame-shit	ENST00000522563	ENST00000337019		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
Frame-shit	ENST00000522563	ENST00000366889		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
Frame-shit	ENST00000522563	ENST00000366888		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
5CDS-3UTR	ENST00000522563	ENST00000542669		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3CDS	ENST00000517315	ENST00000337019		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3CDS	ENST00000517315	ENST00000366889		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3CDS	ENST00000517315	ENST00000366888		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3UTR	ENST00000517315	ENST00000542669		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3CDS	ENST00000521460	ENST00000337019		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3CDS	ENST00000521460	ENST00000366889		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3CDS	ENST00000521460	ENST00000366888		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
intron-3UTR	ENST00000521460	ENST00000542669		TCGA	RV	HNSC	TCGA-BA-4077-01B	NSMCE2	chr8	126114729	+	PACRG	chr6	163235179	+
Frame-shit	ENST00000319481	ENST00000339486		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
Frame-shit	ENST00000319481	ENST00000581585		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
Frame-shit	ENST00000319481	ENST00000577501		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
In-frame	ENST00000399443	ENST00000339486		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
In-frame	ENST00000399443	ENST00000581585		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
In-frame	ENST00000399443	ENST00000577501		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
Frame-shit	ENST00000357041	ENST00000339486		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
Frame-shit	ENST00000357041	ENST00000581585		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
Frame-shit	ENST00000357041	ENST00000577501		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
intron-3CDS	ENST00000399441	ENST00000339486		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
intron-3CDS	ENST00000399441	ENST00000581585		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
intron-3CDS	ENST00000399441	ENST00000577501		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
intron-3CDS	ENST00000582618	ENST00000339486		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
intron-3CDS	ENST00000582618	ENST00000581585		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
intron-3CDS	ENST00000582618	ENST00000577501		TCGA	RV	HNSC	TCGA-CQ-5332-01A	OSBPL1A	chr18	21805006	-	RIOK3	chr18	21053393	+
5CDS-intron	ENST00000355703	ENST00000267101		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000355703	ENST00000450146		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000355703	ENST00000415288		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000355703	ENST00000553131		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000355703	ENST00000411731		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000355703	ENST00000549832		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000531280	ENST00000267101		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000531280	ENST00000450146		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000531280	ENST00000415288		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000531280	ENST00000553131		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000531280	ENST00000411731		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000531280	ENST00000549832		TCGA	RV	HNSC	TCGA-DQ-7595-01A	PCNXL3	chr11	65404910	+	ERBB3	chr12	56492035	+
In-frame	ENST00000401827	ENST00000519301		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000520407		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000523079		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000338921		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000356819		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000287845		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000341377		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000287842		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000521670		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000405005		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000520502		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000401827	ENST00000539990		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000401827	ENST00000523681		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000519301		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000520407		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000523079		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000338921		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000356819		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000287845		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000341377		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000287842		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000521670		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000405005		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000520502		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000396642	ENST00000539990		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000396642	ENST00000523681		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000519301		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000520407		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000523079		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000338921		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000356819		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000287845		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000341377		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000287842		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000521670		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000405005		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000520502		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
In-frame	ENST00000379419	ENST00000539990		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000379419	ENST00000523681		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000519301		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000520407		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000523079		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000338921		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000356819		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000287845		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000341377		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000287842		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000521670		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000405005		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000520502		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000518667	ENST00000539990		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
intron-intron	ENST00000518667	ENST00000523681		TCGA	RV	HNSC	TCGA-CQ-5334-01A	PDE7A	chr8	66691955	-	NRG1	chr8	32585467	+
5CDS-5UTR	ENST00000373647	ENST00000373670		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
5CDS-5UTR	ENST00000373647	ENST00000357244		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
5CDS-5UTR	ENST00000373647	ENST00000423239		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
5CDS-5UTR	ENST00000373647	ENST00000373665		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
5CDS-5UTR	ENST00000373647	ENST00000335387		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
5CDS-intron	ENST00000373647	ENST00000478216		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
5CDS-intron	ENST00000373647	ENST00000471874		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000493854	ENST00000373670		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000493854	ENST00000357244		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000493854	ENST00000423239		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000493854	ENST00000373665		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000493854	ENST00000335387		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-intron	ENST00000493854	ENST00000478216		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-intron	ENST00000493854	ENST00000471874		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000373643	ENST00000373670		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000373643	ENST00000357244		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000373643	ENST00000423239		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000373643	ENST00000373665		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-5UTR	ENST00000373643	ENST00000335387		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-intron	ENST00000373643	ENST00000478216		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
intron-intron	ENST00000373643	ENST00000471874		TCGA	RV	HNSC	TCGA-F7-A61W-01A	RABGAP1	chr9	125719488	+	RC3H2	chr9	125659855	-
In-frame	ENST00000556569	ENST00000332981		TCGA	RV	HNSC	TCGA-BB-4227-01A	RP11-47I22.3	chr14	62037478	+	PRKCH	chr14	61952220	+
In-frame	ENST00000556569	ENST00000555082		TCGA	RV	HNSC	TCGA-BB-4227-01A	RP11-47I22.3	chr14	62037478	+	PRKCH	chr14	61952220	+
5CDS-intron	ENST00000556569	ENST00000556245		TCGA	RV	HNSC	TCGA-BB-4227-01A	RP11-47I22.3	chr14	62037478	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000556717	ENST00000332981		TCGA	RV	HNSC	TCGA-BB-4227-01A	RP11-47I22.3	chr14	62037478	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000556717	ENST00000555082		TCGA	RV	HNSC	TCGA-BB-4227-01A	RP11-47I22.3	chr14	62037478	+	PRKCH	chr14	61952220	+
intron-intron	ENST00000556717	ENST00000556245		TCGA	RV	HNSC	TCGA-BB-4227-01A	RP11-47I22.3	chr14	62037478	+	PRKCH	chr14	61952220	+
In-frame	ENST00000357436	ENST00000407673		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000357436	ENST00000401624		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000357436	ENST00000404898		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000357436	ENST00000400164		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000357436	ENST00000336649		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000357436	ENST00000402142		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
5CDS-intron	ENST00000357436	ENST00000471970		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000336738	ENST00000407673		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000336738	ENST00000401624		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000336738	ENST00000404898		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000336738	ENST00000400164		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000336738	ENST00000336649		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000336738	ENST00000402142		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
5CDS-intron	ENST00000336738	ENST00000471970		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000442465	ENST00000407673		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000442465	ENST00000401624		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000442465	ENST00000404898		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000442465	ENST00000400164		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000442465	ENST00000336649		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000442465	ENST00000402142		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
5CDS-intron	ENST00000442465	ENST00000471970		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-3CDS	ENST00000495174	ENST00000407673		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-3CDS	ENST00000495174	ENST00000401624		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-3CDS	ENST00000495174	ENST00000404898		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-3CDS	ENST00000495174	ENST00000400164		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-3CDS	ENST00000495174	ENST00000336649		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-3CDS	ENST00000495174	ENST00000402142		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
3UTR-intron	ENST00000495174	ENST00000471970		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000599616	ENST00000407673		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000599616	ENST00000401624		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000599616	ENST00000404898		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000599616	ENST00000400164		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000599616	ENST00000336649		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
In-frame	ENST00000599616	ENST00000402142		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
5CDS-intron	ENST00000599616	ENST00000471970		TCGA	RV	HNSC	TCGA-CV-6941-01A	SH3BP1	chr22	38039795	+	CACNA1I	chr22	40057970	+
Frame-shit	ENST00000397149	ENST00000535206		TCGA	RV	HNSC	TCGA-CV-7428-01A	SMU1	chr9	33068822	-	B4GALT1	chr9	33104779	-
5CDS-intron	ENST00000397149	ENST00000379731		TCGA	RV	HNSC	TCGA-CV-7428-01A	SMU1	chr9	33068822	-	B4GALT1	chr9	33104779	-
5CDS-intron	ENST00000397149	ENST00000541851		TCGA	RV	HNSC	TCGA-CV-7428-01A	SMU1	chr9	33068822	-	B4GALT1	chr9	33104779	-
In-frame	ENST00000536631	ENST00000535206		TCGA	RV	HNSC	TCGA-CV-7428-01A	SMU1	chr9	33068822	-	B4GALT1	chr9	33104779	-
5CDS-intron	ENST00000536631	ENST00000379731		TCGA	RV	HNSC	TCGA-CV-7428-01A	SMU1	chr9	33068822	-	B4GALT1	chr9	33104779	-
5CDS-intron	ENST00000536631	ENST00000541851		TCGA	RV	HNSC	TCGA-CV-7428-01A	SMU1	chr9	33068822	-	B4GALT1	chr9	33104779	-
Frame-shit	ENST00000340513	ENST00000278979		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000340513	ENST00000398083		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000340513	ENST00000486996		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000340513	ENST00000398084		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000340513	ENST00000375966		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000340513	ENST00000339738		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000340513	ENST00000493115		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
Frame-shit	ENST00000300403	ENST00000278979		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000300403	ENST00000398083		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000300403	ENST00000486996		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000300403	ENST00000398084		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000300403	ENST00000375966		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000300403	ENST00000339738		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
5CDS-intron	ENST00000300403	ENST00000493115		TCGA	RV	HNSC	TCGA-CV-7421-01A	TPX2	chr20	30347982	+	DUSP15	chr20	30438479	-
intron-3CDS	ENST00000560371	ENST00000361246		TCGA	RV	HNSC	TCGA-CN-4735-01A	TRAF3	chr14	103296809	+	CDC42BPB	chr14	103450093	-
5UTR-3CDS	ENST00000347662	ENST00000361246		TCGA	RV	HNSC	TCGA-CN-4735-01A	TRAF3	chr14	103296809	+	CDC42BPB	chr14	103450093	-
5UTR-3CDS	ENST00000392745	ENST00000361246		TCGA	RV	HNSC	TCGA-CN-4735-01A	TRAF3	chr14	103296809	+	CDC42BPB	chr14	103450093	-
intron-3CDS	ENST00000539721	ENST00000361246		TCGA	RV	HNSC	TCGA-CN-4735-01A	TRAF3	chr14	103296809	+	CDC42BPB	chr14	103450093	-
5UTR-3CDS	ENST00000351691	ENST00000361246		TCGA	RV	HNSC	TCGA-CN-4735-01A	TRAF3	chr14	103296809	+	CDC42BPB	chr14	103450093	-
5CDS-intron	ENST00000320610	ENST00000588651		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000320610	ENST00000361113		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000320610	ENST00000588174		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000253159	ENST00000588651		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000253159	ENST00000361113		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000253159	ENST00000588174		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
intron-intron	ENST00000583095	ENST00000588651		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
intron-intron	ENST00000583095	ENST00000361113		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
intron-intron	ENST00000583095	ENST00000588174		TCGA	RV	HNSC	TCGA-CN-4725-01A	ZNF236	chr18	74593468	+	ZNF627	chr19	11725342	+
In-frame	ENST00000300870	ENST00000376958		TCGA	RV	HNSC	TCGA-CV-A465-01A	ZNF267	chr16	31896577	+	GPR180	chr13	95273332	+
In-frame	ENST00000394846	ENST00000376958		TCGA	RV	HNSC	TCGA-CV-A465-01A	ZNF267	chr16	31896577	+	GPR180	chr13	95273332	+
intron-3CDS	ENST00000317829	ENST00000325212		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317829	ENST00000344196		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317829	ENST00000411936		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317829	ENST00000531700		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-intron	ENST00000317829	ENST00000531622		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317837	ENST00000325212		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317837	ENST00000344196		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317837	ENST00000411936		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000317837	ENST00000531700		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-intron	ENST00000317837	ENST00000531622		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000433060	ENST00000325212		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000433060	ENST00000344196		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000433060	ENST00000411936		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000433060	ENST00000531700		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-intron	ENST00000433060	ENST00000531622		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000539727	ENST00000325212		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000539727	ENST00000344196		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000539727	ENST00000411936		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-3CDS	ENST00000539727	ENST00000531700		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
intron-intron	ENST00000539727	ENST00000531622		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	AMOTL1	chr11	94462221	+	KIAA1731	chr11	93454478	+
In-frame	ENST00000286800	ENST00000309117		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000286800	ENST00000399000		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000286800	ENST00000288304		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000286800	ENST00000539844		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000286800	ENST00000399001		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000286800	ENST00000476950		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000286800	ENST00000398998		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
In-frame	ENST00000399921	ENST00000309117		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000399921	ENST00000399000		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000399921	ENST00000288304		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000399921	ENST00000539844		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000399921	ENST00000399001		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000399921	ENST00000476950		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000399921	ENST00000398998		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-3CDS	ENST00000462262	ENST00000309117		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-5UTR	ENST00000462262	ENST00000399000		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-5UTR	ENST00000462262	ENST00000288304		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-5UTR	ENST00000462262	ENST00000539844		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-intron	ENST00000462262	ENST00000399001		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-intron	ENST00000462262	ENST00000476950		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
intron-intron	ENST00000462262	ENST00000398998		TCGA	RV	HNSC	TCGA-CQ-7065-01A	BACH1	chr21	30702014	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000443035	ENST00000537259		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-3UTR	ENST00000443035	ENST00000339868		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-3UTR	ENST00000443035	ENST00000261892		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000443035	ENST00000544319		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000443035	ENST00000399033		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000443035	ENST00000546330		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000443035	ENST00000449142		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000431932	ENST00000537259		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-3UTR	ENST00000431932	ENST00000339868		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-3UTR	ENST00000431932	ENST00000261892		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000431932	ENST00000544319		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000431932	ENST00000399033		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000431932	ENST00000546330		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-intron	ENST00000431932	ENST00000449142		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-intron	ENST00000567323	ENST00000537259		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-3UTR	ENST00000567323	ENST00000339868		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-3UTR	ENST00000567323	ENST00000261892		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-intron	ENST00000567323	ENST00000544319		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-intron	ENST00000567323	ENST00000399033		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-intron	ENST00000567323	ENST00000546330		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5UTR-intron	ENST00000567323	ENST00000449142		TCGA	RV	HNSC	TCGA-P3-A6T6-01A	DENND4A	chr15	65982753	-	SLC24A1	chr15	65947068	+
5CDS-5UTR	ENST00000400274	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000400274	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000400274	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000427143	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000427143	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000427143	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000318711	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000318711	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000318711	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000417564	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000417564	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000417564	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000457905	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000457905	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000457905	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000466639	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000466639	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000466639	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000435722	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000435722	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
5CDS-5UTR	ENST00000435722	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
intron-5UTR	ENST00000479654	ENST00000318948		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
intron-5UTR	ENST00000479654	ENST00000400199		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
intron-5UTR	ENST00000479654	ENST00000400202		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DIP2A	chr21	47929289	+	NRIP1	chr21	16340847	-
Frame-shit	ENST00000369144	ENST00000508802		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
Frame-shit	ENST00000369144	ENST00000261439		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000369144	ENST00000402522		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000369144	ENST00000407365		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
Frame-shit	ENST00000541549	ENST00000508802		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
Frame-shit	ENST00000541549	ENST00000261439		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000541549	ENST00000402522		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
5CDS-intron	ENST00000541549	ENST00000407365		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	EIF3A	chr10	120809313	-	TBC1D1	chr4	38091553	+
In-frame	ENST00000543086	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000543086	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000543086	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
In-frame	ENST00000546231	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000546231	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000546231	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
In-frame	ENST00000397203	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000397203	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000397203	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
In-frame	ENST00000360905	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000360905	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000360905	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
In-frame	ENST00000589028	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000589028	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000589028	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
In-frame	ENST00000355446	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000355446	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5CDS-intron	ENST00000355446	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
intron-3CDS	ENST00000536573	ENST00000014930		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
intron-intron	ENST00000536573	ENST00000540916		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
intron-intron	ENST00000536573	ENST00000536942		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	ERC1	chr12	1517413	+	HEBP1	chr12	13142349	-
5UTR-3CDS	ENST00000312753	ENST00000339556		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	GNRHR2	chr1	145515189	-	S100A13	chr1	153591514	-
5UTR-3CDS	ENST00000312753	ENST00000392622		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	GNRHR2	chr1	145515189	-	S100A13	chr1	153591514	-
5UTR-3CDS	ENST00000312753	ENST00000392623		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	GNRHR2	chr1	145515189	-	S100A13	chr1	153591514	-
5UTR-3CDS	ENST00000312753	ENST00000440685		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	GNRHR2	chr1	145515189	-	S100A13	chr1	153591514	-
5UTR-3CDS	ENST00000312753	ENST00000368699		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	GNRHR2	chr1	145515189	-	S100A13	chr1	153591514	-
5UTR-5UTR	ENST00000312753	ENST00000491177		TCGA	RV	HNSC	TCGA-TN-A7HJ-01A	GNRHR2	chr1	145515189	-	S100A13	chr1	153591514	-
5CDS-5UTR	ENST00000375712	ENST00000278886		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KIF3B	chr20	30904677	+	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000375712	ENST00000422516		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KIF3B	chr20	30904677	+	NINL	chr20	25507234	-
5CDS-intron	ENST00000375712	ENST00000464285		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KIF3B	chr20	30904677	+	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000418717	ENST00000278886		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KIF3B	chr20	30904677	+	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000418717	ENST00000422516		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KIF3B	chr20	30904677	+	NINL	chr20	25507234	-
5CDS-intron	ENST00000418717	ENST00000464285		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KIF3B	chr20	30904677	+	NINL	chr20	25507234	-
In-frame	ENST00000406516	ENST00000381061		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000406516	ENST00000252934		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000406516	ENST00000498009		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000406516	ENST00000402380		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-3CDS	ENST00000444929	ENST00000381061		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-3CDS	ENST00000444929	ENST00000252934		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-intron	ENST00000444929	ENST00000498009		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-intron	ENST00000444929	ENST00000402380		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000331728	ENST00000381061		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000331728	ENST00000252934		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000331728	ENST00000498009		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000331728	ENST00000402380		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000333611	ENST00000381061		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000333611	ENST00000252934		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000333611	ENST00000498009		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000333611	ENST00000402380		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000340552	ENST00000381061		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
In-frame	ENST00000340552	ENST00000252934		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000340552	ENST00000498009		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000340552	ENST00000402380		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-3CDS	ENST00000467301	ENST00000381061		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-3CDS	ENST00000467301	ENST00000252934		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-intron	ENST00000467301	ENST00000498009		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
intron-intron	ENST00000467301	ENST00000402380		TCGA	RV	HNSC	TCGA-CV-6941-01A	LIMK2	chr22	31654412	+	ATXN10	chr22	46202839	+
Frame-shit	ENST00000341653	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000341653	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000341653	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358402	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000358402	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555932	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-intron	ENST00000555932	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000284165	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000284165	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000358664	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000358664	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-3CDS	ENST00000555419	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
intron-intron	ENST00000555419	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000557277	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-intron	ENST00000557277	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556979	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000556979	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000555667	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000555667	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000557746	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000557746	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000556443	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000556443	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000541979		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000465038		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000352853		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000371438		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000371436		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000576263		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000371432		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
Frame-shit	ENST00000246163	ENST00000359524		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5CDS-intron	ENST00000246163	ENST00000483243		TCGA	RV	HNSC	TCGA-CN-5367-01A	MAX	chr14	65560426	-	RUNX2	chr6	45405684	+
5UTR-3CDS	ENST00000304593	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000304593	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
intron-3CDS	ENST00000476924	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
intron-intron	ENST00000476924	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-3CDS	ENST00000353339	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000353339	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-3CDS	ENST00000354503	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000354503	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
intron-3CDS	ENST00000409565	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
intron-intron	ENST00000409565	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-3CDS	ENST00000409616	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000409616	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-3CDS	ENST00000337110	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000337110	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
intron-3CDS	ENST00000524634	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
intron-intron	ENST00000524634	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-3CDS	ENST00000349901	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000349901	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-3CDS	ENST00000392059	ENST00000396578		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
5UTR-intron	ENST00000392059	ENST00000468753		TCGA	RV	HNSC	TCGA-CV-7433-01A	MFF	chr2	228193505	+	COL4A3	chr2	228147081	+
In-frame	ENST00000355280	ENST00000251535		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MINK1	chr17	4736935	+	ALOX12	chr17	6903655	+
In-frame	ENST00000347992	ENST00000251535		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MINK1	chr17	4736935	+	ALOX12	chr17	6903655	+
In-frame	ENST00000453408	ENST00000251535		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MINK1	chr17	4736935	+	ALOX12	chr17	6903655	+
5UTR-3CDS	ENST00000373803	ENST00000304062		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000373803	ENST00000505203		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000359675	ENST00000304062		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000359675	ENST00000505203		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000349004	ENST00000304062		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000349004	ENST00000505203		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
intron-3CDS	ENST00000373773	ENST00000304062		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
intron-3CDS	ENST00000373773	ENST00000505203		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000540765	ENST00000304062		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000540765	ENST00000505203		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	NDRG3	chr20	35374448	-	CPLX1	chr4	786396	-
In-frame	ENST00000380958	ENST00000376214		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
In-frame	ENST00000380958	ENST00000376213		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000395882		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000304053		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000376208		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000277120		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000323115		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000359847		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000380958	ENST00000395866		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-3CDS	ENST00000399613	ENST00000376214		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-3CDS	ENST00000399613	ENST00000376213		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000395882		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000304053		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000376208		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000277120		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000323115		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000359847		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5UTR-intron	ENST00000399613	ENST00000395866		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-3CDS	ENST00000282391	ENST00000376214		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-3CDS	ENST00000282391	ENST00000376213		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000395882		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000304053		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000376208		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000277120		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000323115		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000359847		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000282391	ENST00000395866		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-3CDS	ENST00000483842	ENST00000376214		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-3CDS	ENST00000483842	ENST00000376213		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000395882		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000304053		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000376208		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000277120		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000323115		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000359847		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000483842	ENST00000395866		TCGA	RV	HNSC	TCGA-BB-4223-01A	PAN3	chr13	28713224	+	NTRK2	chr9	87549077	+
5CDS-5UTR	ENST00000317096	ENST00000334444		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-intron	ENST00000317096	ENST00000265586		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-intron	ENST00000317096	ENST00000492216		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000317096	ENST00000427120		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000317096	ENST00000392579		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000317096	ENST00000382494		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000317096	ENST00000446941		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000311101	ENST00000334444		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-intron	ENST00000311101	ENST00000265586		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-intron	ENST00000311101	ENST00000492216		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000311101	ENST00000427120		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000311101	ENST00000392579		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000311101	ENST00000382494		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000311101	ENST00000446941		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000435888	ENST00000334444		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-intron	ENST00000435888	ENST00000265586		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-intron	ENST00000435888	ENST00000492216		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000435888	ENST00000427120		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000435888	ENST00000392579		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000435888	ENST00000382494		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000435888	ENST00000446941		TCGA	RV	HNSC	TCGA-BA-A6DL-01A	PARL	chr3	183602510	-	ABCC5	chr3	183732235	-
5CDS-5UTR	ENST00000395782	ENST00000353383		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000395782	ENST00000489697		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000395782	ENST00000261641		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-5UTR	ENST00000395783	ENST00000353383		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000395783	ENST00000489697		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000395783	ENST00000261641		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-5UTR	ENST00000435340	ENST00000353383		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000435340	ENST00000489697		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000435340	ENST00000261641		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-5UTR	ENST00000255389	ENST00000353383		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000255389	ENST00000489697		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000255389	ENST00000261641		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-5UTR	ENST00000395781	ENST00000353383		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000395781	ENST00000489697		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5CDS-intron	ENST00000395781	ENST00000261641		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
intron-5UTR	ENST00000484838	ENST00000353383		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
intron-intron	ENST00000484838	ENST00000489697		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
intron-intron	ENST00000484838	ENST00000261641		TCGA	RV	HNSC	TCGA-BA-6869-01A	PEMT	chr17	17480234	-	RAI1	chr17	17627342	+
5UTR-3CDS	ENST00000405995	ENST00000276893		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
5UTR-intron	ENST00000405995	ENST00000381373		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
5UTR-intron	ENST00000405995	ENST00000485617		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-3CDS	ENST00000357304	ENST00000276893		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000357304	ENST00000381373		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000357304	ENST00000485617		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-3CDS	ENST00000458550	ENST00000276893		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000458550	ENST00000381373		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000458550	ENST00000485617		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-3CDS	ENST00000372249	ENST00000276893		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000372249	ENST00000381373		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000372249	ENST00000485617		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-3CDS	ENST00000465931	ENST00000276893		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000465931	ENST00000381373		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
intron-intron	ENST00000465931	ENST00000485617		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6475391	+
In-frame	ENST00000357248	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000357248	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000349721	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000349721	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000382203	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000382203	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000382194	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
In-frame	ENST00000382194	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000491574	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000491574	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000324954	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000324954	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000302401	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000302401	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000382186	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000382186	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000382185	ENST00000382276		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
intron-3CDS	ENST00000382185	ENST00000569227		TCGA	RV	HNSC	TCGA-CV-7415-01A	SMARCA2	chr9	2088613	+	DMRT1	chr9	916763	+
Frame-shit	ENST00000301740	ENST00000293851		TCGA	RV	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836122	-
Frame-shit	ENST00000301740	ENST00000576886		TCGA	RV	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836122	-
Frame-shit	ENST00000301740	ENST00000570702		TCGA	RV	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836122	-
intron-3CDS	ENST00000574593	ENST00000293851		TCGA	RV	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836122	-
intron-3CDS	ENST00000574593	ENST00000576886		TCGA	RV	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836122	-
intron-3CDS	ENST00000574593	ENST00000570702		TCGA	RV	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836122	-
5UTR-3CDS	ENST00000340513	ENST00000287272		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000340513	ENST00000453357		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000340513	ENST00000404895		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000340513	ENST00000420357		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000340513	ENST00000416672		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-intron	ENST00000340513	ENST00000449677		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000300403	ENST00000287272		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000300403	ENST00000453357		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000300403	ENST00000404895		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000300403	ENST00000420357		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000300403	ENST00000416672		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
5UTR-intron	ENST00000300403	ENST00000449677		TCGA	RV	HNSC	TCGA-CN-6992-01A	TPX2	chr20	30330450	+	UNC5D	chr8	35406810	+
Frame-shit	ENST00000321582	ENST00000537618		TCGA	RV	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124794002	-	NDUFA8	chr9	124910556	-
Frame-shit	ENST00000321582	ENST00000373768		TCGA	RV	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124794002	-	NDUFA8	chr9	124910556	-
intron-3CDS	ENST00000474723	ENST00000537618		TCGA	RV	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124794002	-	NDUFA8	chr9	124910556	-
intron-3CDS	ENST00000474723	ENST00000373768		TCGA	RV	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124794002	-	NDUFA8	chr9	124910556	-
Frame-shit	ENST00000373776	ENST00000537618		TCGA	RV	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124794002	-	NDUFA8	chr9	124910556	-
Frame-shit	ENST00000373776	ENST00000373768		TCGA	RV	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124794002	-	NDUFA8	chr9	124910556	-
In-frame	ENST00000263461	ENST00000329399		TCGA	RV	HNSC	TCGA-DQ-7593-01A	WDR11	chr10	122664928	+	PDLIM1	chr10	97031541	-
5CDS-intron	ENST00000263461	ENST00000477757		TCGA	RV	HNSC	TCGA-DQ-7593-01A	WDR11	chr10	122664928	+	PDLIM1	chr10	97031541	-
3UTR-3CDS	ENST00000604509	ENST00000329399		TCGA	RV	HNSC	TCGA-DQ-7593-01A	WDR11	chr10	122664928	+	PDLIM1	chr10	97031541	-
3UTR-intron	ENST00000604509	ENST00000477757		TCGA	RV	HNSC	TCGA-DQ-7593-01A	WDR11	chr10	122664928	+	PDLIM1	chr10	97031541	-
intron-3CDS	ENST00000296490	ENST00000307092		TCGA	RV	HNSC	TCGA-CN-4731-01A	WDR82	chr3	52321849	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000296490	ENST00000307076		TCGA	RV	HNSC	TCGA-CN-4731-01A	WDR82	chr3	52321849	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000296490	ENST00000422318		TCGA	RV	HNSC	TCGA-CN-4731-01A	WDR82	chr3	52321849	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000296490	ENST00000459839		TCGA	RV	HNSC	TCGA-CN-4731-01A	WDR82	chr3	52321849	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000296490	ENST00000490681		TCGA	RV	HNSC	TCGA-CN-4731-01A	WDR82	chr3	52321849	-	NT5DC2	chr3	52563350	-
intron-intron	ENST00000530124	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000530124	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000257247	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000257247	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000525875	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000525875	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000378024	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000378024	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-6474-01A	AHNAK	chr11	62283375	-	SUPT16H	chr14	21829491	-
In-frame	ENST00000421745	ENST00000345662		TCGA	RV	HNSC	TCGA-F7-A624-01A	BIRC6	chr2	32774548	+	SPAST	chr2	32372287	+
In-frame	ENST00000421745	ENST00000315285		TCGA	RV	HNSC	TCGA-F7-A624-01A	BIRC6	chr2	32774548	+	SPAST	chr2	32372287	+
5UTR-5UTR	ENST00000370033	ENST00000361198		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
5UTR-5UTR	ENST00000370033	ENST00000425280		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
5UTR-5UTR	ENST00000370033	ENST00000490751		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
5UTR-5UTR	ENST00000311122	ENST00000361198		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
5UTR-5UTR	ENST00000311122	ENST00000425280		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
5UTR-5UTR	ENST00000311122	ENST00000490751		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000495001	ENST00000361198		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000495001	ENST00000425280		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
intron-5UTR	ENST00000495001	ENST00000490751		TCGA	RV	HNSC	TCGA-F7-A61W-01A	C10orf76	chr10	103815842	-	LDB1	chr10	103871293	-
In-frame	ENST00000547956	ENST00000525566		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000429002		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000503506		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000526691		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000388854		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000354940		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000526390		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000529546		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000540716		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000524698		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000542918		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000378070		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000397736		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000427956		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000547956	ENST00000526950		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
5CDS-intron	ENST00000547956	ENST00000526006		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000525566		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000429002		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000503506		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000526691		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000388854		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000354940		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000526390		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000529546		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000540716		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000524698		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000542918		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000378070		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000397736		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000427956		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000549260	ENST00000526950		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
5CDS-intron	ENST00000549260	ENST00000526006		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000525566		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000429002		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000503506		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000526691		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000388854		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000354940		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000526390		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000529546		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000540716		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000524698		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000542918		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000378070		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000397736		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000427956		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000303694	ENST00000526950		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
5CDS-intron	ENST00000303694	ENST00000526006		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000525566		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000429002		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000503506		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000526691		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000388854		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000354940		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000526390		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000529546		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000540716		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000524698		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000542918		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000378070		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000397736		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000427956		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
In-frame	ENST00000546689	ENST00000526950		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
5CDS-intron	ENST00000546689	ENST00000526006		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000525566		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000429002		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000503506		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000526691		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000388854		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000354940		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000526390		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000529546		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000540716		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000524698		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000542918		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000378070		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000397736		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000427956		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-3CDS	ENST00000550711	ENST00000526950		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
intron-intron	ENST00000550711	ENST00000526006		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CHST11	chr12	104995769	+	TXNRD1	chr12	104732917	+
5UTR-5UTR	ENST00000495963	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5UTR-5UTR	ENST00000495963	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5UTR-intron	ENST00000495963	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378284	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378284	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-intron	ENST00000378284	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378272	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378272	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-intron	ENST00000378272	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000242827	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000242827	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-intron	ENST00000242827	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378270	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378270	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-intron	ENST00000378270	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378282	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378282	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-intron	ENST00000378282	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378268	ENST00000378434		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-5UTR	ENST00000378268	ENST00000345941		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
5CDS-intron	ENST00000378268	ENST00000465365		TCGA	RV	HNSC	TCGA-BA-5555-01A	EBPL	chr13	50265390	-	LPAR6	chr13	48989946	-
Frame-shit	ENST00000330386	ENST00000261674		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000330386	ENST00000541286		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000330386	ENST00000539506		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000389561	ENST00000261674		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000389561	ENST00000541286		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000389561	ENST00000539506		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000333577	ENST00000261674		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000333577	ENST00000541286		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000333577	ENST00000539506		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000332482	ENST00000261674		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000332482	ENST00000541286		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000332482	ENST00000539506		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000389562	ENST00000261674		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000389562	ENST00000541286		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000389562	ENST00000539506		TCGA	RV	HNSC	TCGA-CQ-7067-01A	EP400	chr12	132476001	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000359015	ENST00000451320		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
5CDS-intron	ENST00000359015	ENST00000429148		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
5CDS-intron	ENST00000359015	ENST00000353617		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
5CDS-intron	ENST00000359015	ENST00000405727		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
5CDS-intron	ENST00000359015	ENST00000356064		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
5CDS-3UTR	ENST00000359015	ENST00000511289		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-3CDS	ENST00000355845	ENST00000451320		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000355845	ENST00000429148		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000355845	ENST00000353617		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000355845	ENST00000405727		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000355845	ENST00000356064		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-3UTR	ENST00000355845	ENST00000511289		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-3CDS	ENST00000463140	ENST00000451320		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000463140	ENST00000429148		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000463140	ENST00000353617		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000463140	ENST00000405727		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-intron	ENST00000463140	ENST00000356064		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
intron-3UTR	ENST00000463140	ENST00000511289		TCGA	RV	HNSC	TCGA-CN-4736-01A	MAP3K5	chr6	137112848	-	ARFIP1	chr4	153793604	+
5CDS-5UTR	ENST00000356462	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000356462	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400345	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000400345	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000589054	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000589054	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5UTR-5UTR	ENST00000256832	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5UTR-5UTR	ENST00000256832	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382850	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000382850	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000256830	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000256830	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
3UTR-5UTR	ENST00000588516	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
3UTR-5UTR	ENST00000588516	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5UTR-5UTR	ENST00000456986	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5UTR-5UTR	ENST00000456986	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5UTR-5UTR	ENST00000435432	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5UTR-5UTR	ENST00000435432	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000357895	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000357895	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000586263	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-5UTR	ENST00000586263	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000456173	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000456173	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000431212	ENST00000262150		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
intron-5UTR	ENST00000431212	ENST00000540086		TCGA	RV	HNSC	TCGA-CN-5359-01A	NEDD4L	chr18	55833093	+	CDH19	chr18	64239553	-
5CDS-intron	ENST00000238570	ENST00000557636		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000238570	ENST00000286650		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000238570	ENST00000298832		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000238570	ENST00000556893		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000238570	ENST00000554510		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000238570	ENST00000556977		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000238570	ENST00000555422		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000557636		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000286650		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000298832		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000556893		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000554510		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000556977		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000304743	ENST00000555422		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000557636		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000286650		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000298832		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000556893		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000554510		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000556977		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
5CDS-intron	ENST00000439984	ENST00000555422		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000557636		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000286650		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000298832		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000556893		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000554510		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000556977		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
3UTR-intron	ENST00000556272	ENST00000555422		TCGA	RV	HNSC	TCGA-BA-A6D8-01A	PCNX	chr14	71570386	+	TTLL5	chr14	76420767	+
In-frame	ENST00000257821	ENST00000262366		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
In-frame	ENST00000257821	ENST00000433375		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000323180	ENST00000262366		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000323180	ENST00000433375		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
In-frame	ENST00000418153	ENST00000262366		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
In-frame	ENST00000418153	ENST00000433375		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000527753	ENST00000262366		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000527753	ENST00000433375		TCGA	RV	HNSC	TCGA-CN-6994-01A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
Frame-shit	ENST00000230419	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000230419	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000230419	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000349241	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000349241	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000349241	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000345201	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000345201	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000345201	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000352931	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000352931	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000352931	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
intron-3CDS	ENST00000481273	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
intron-3CDS	ENST00000481273	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
intron-intron	ENST00000481273	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000476760	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000476760	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000476760	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000471863	ENST00000360359		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000471863	ENST00000535627		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000471863	ENST00000470698		TCGA	RV	HNSC	TCGA-BA-4078-01A	PTK7	chr6	43044305	+	ANKS1A	chr6	34935016	+
5UTR-3CDS	ENST00000381196	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000381196	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000381196	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000381196	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000381196	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000360074	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000360074	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000360074	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000360074	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000360074	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000537002	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000537002	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000537002	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000537002	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000537002	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000397617	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397617	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397617	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397617	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397617	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000358503	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000358503	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000358503	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000358503	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000358503	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000397611	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397611	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397611	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397611	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397611	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000355233	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000355233	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000355233	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000355233	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000355233	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000356435	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000356435	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000356435	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000356435	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000356435	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000540109	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000540109	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000540109	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000540109	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000540109	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000486161	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000486161	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000486161	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000486161	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000486161	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000397606	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397606	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397606	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397606	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000397606	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-3CDS	ENST00000463477	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000463477	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000463477	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000463477	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5UTR-intron	ENST00000463477	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-3CDS	ENST00000471274	ENST00000293230		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000471274	ENST00000586160		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000471274	ENST00000589342		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000471274	ENST00000590175		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
intron-intron	ENST00000471274	ENST00000589145		TCGA	RV	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74527224	-
5CDS-intron	ENST00000368732	ENST00000216297		TCGA	RV	HNSC	TCGA-CV-5970-01A	S100A8	chr1	153362508	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000368732	ENST00000555943		TCGA	RV	HNSC	TCGA-CV-5970-01A	S100A8	chr1	153362508	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000368733	ENST00000216297		TCGA	RV	HNSC	TCGA-CV-5970-01A	S100A8	chr1	153362508	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000368733	ENST00000555943		TCGA	RV	HNSC	TCGA-CV-5970-01A	S100A8	chr1	153362508	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000477801	ENST00000216297		TCGA	RV	HNSC	TCGA-CV-5970-01A	S100A8	chr1	153362508	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000477801	ENST00000555943		TCGA	RV	HNSC	TCGA-CV-5970-01A	S100A8	chr1	153362508	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000373463	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-5250-01A	TMEM54	chr1	33360196	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000373463	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-5250-01A	TMEM54	chr1	33360196	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000329151	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-5250-01A	TMEM54	chr1	33360196	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000329151	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-5250-01A	TMEM54	chr1	33360196	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000475208	ENST00000216297		TCGA	RV	HNSC	TCGA-CR-5250-01A	TMEM54	chr1	33360196	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000475208	ENST00000555943		TCGA	RV	HNSC	TCGA-CR-5250-01A	TMEM54	chr1	33360196	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000262291	ENST00000346141		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000262291	ENST00000325752		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000262291	ENST00000340993		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000262291	ENST00000394239		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000262291	ENST00000592426		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000262291	ENST00000376094		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000262291	ENST00000539018		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000262291	ENST00000591611		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000537567	ENST00000346141		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000537567	ENST00000325752		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000537567	ENST00000340993		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000537567	ENST00000394239		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000537567	ENST00000592426		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000537567	ENST00000376094		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000537567	ENST00000539018		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000537567	ENST00000591611		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000539763	ENST00000346141		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000539763	ENST00000325752		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000539763	ENST00000340993		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000539763	ENST00000394239		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000539763	ENST00000592426		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000539763	ENST00000376094		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000539763	ENST00000539018		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000539763	ENST00000591611		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000536180	ENST00000346141		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000536180	ENST00000325752		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000536180	ENST00000340993		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000536180	ENST00000394239		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000536180	ENST00000592426		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000536180	ENST00000376094		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000536180	ENST00000539018		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000536180	ENST00000591611		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000545362	ENST00000346141		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000545362	ENST00000325752		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000545362	ENST00000340993		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000545362	ENST00000394239		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000545362	ENST00000592426		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-intron	ENST00000545362	ENST00000376094		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000545362	ENST00000539018		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
5CDS-5UTR	ENST00000545362	ENST00000591611		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000588617	ENST00000346141		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000588617	ENST00000325752		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000588617	ENST00000340993		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000588617	ENST00000394239		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000588617	ENST00000592426		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-intron	ENST00000588617	ENST00000376094		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-5UTR	ENST00000588617	ENST00000539018		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
intron-5UTR	ENST00000588617	ENST00000591611		TCGA	RV	HNSC	TCGA-BA-A6DJ-01A	VMP1	chr17	57895134	+	TUBD1	chr17	57955695	-
In-frame	ENST00000437048	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000437048	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000437048	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000437048	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000437048	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000437048	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000437048	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000437048	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-3CDS	ENST00000574029	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-3CDS	ENST00000574029	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000574029	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000574029	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000574029	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000574029	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000574029	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000574029	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-3CDS	ENST00000576149	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-3CDS	ENST00000576149	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000576149	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000576149	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000576149	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000576149	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000576149	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
intron-intron	ENST00000576149	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-3CDS	ENST00000446250	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-3CDS	ENST00000446250	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-intron	ENST00000446250	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-intron	ENST00000446250	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-intron	ENST00000446250	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-intron	ENST00000446250	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-intron	ENST00000446250	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5UTR-intron	ENST00000446250	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000291074	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000291074	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000291074	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000291074	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000291074	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000291074	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000291074	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000291074	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000571805	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000571805	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000571805	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000571805	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000571805	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000571805	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000571805	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000571805	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000401468	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000401468	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000401468	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000401468	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000401468	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000401468	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000401468	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
5CDS-intron	ENST00000401468	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-A45X-01A	VPS53	chr17	600658	-	ABR	chr17	1003975	-
In-frame	ENST00000379825	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000379825	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000379825	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
In-frame	ENST00000309615	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000309615	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000309615	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
In-frame	ENST00000397172	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000397172	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000397172	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-3CDS	ENST00000379817	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000379817	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000379817	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-3CDS	ENST00000436040	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000436040	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000436040	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
In-frame	ENST00000379819	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000379819	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000379819	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-3CDS	ENST00000468275	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000468275	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000468275	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-3CDS	ENST00000463596	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000463596	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000463596	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
In-frame	ENST00000476858	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000476858	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5CDS-5UTR	ENST00000476858	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5UTR-3CDS	ENST00000379813	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5UTR-5UTR	ENST00000379813	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
5UTR-5UTR	ENST00000379813	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-3CDS	ENST00000473270	ENST00000379471		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000473270	ENST00000464829		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
intron-5UTR	ENST00000473270	ENST00000455041		TCGA	RV	HNSC	TCGA-CR-7376-01A	APTX	chr9	33001565	-	NOL6	chr9	33472410	-
In-frame	ENST00000582520	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
In-frame	ENST00000269321	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000400721	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000584461	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000541078	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000580685	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000581876	ENST00000376929		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000506690		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000389805		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000402874		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000510187		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000360718		TCGA	RV	HNSC	TCGA-CR-7398-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000287394	ENST00000436443		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
Frame-shit	ENST00000287394	ENST00000342788		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
Frame-shit	ENST00000287394	ENST00000402597		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5CDS-intron	ENST00000287394	ENST00000484474		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-3CDS	ENST00000521903	ENST00000436443		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-3CDS	ENST00000521903	ENST00000342788		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-3CDS	ENST00000521903	ENST00000402597		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-intron	ENST00000521903	ENST00000484474		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-3CDS	ENST00000534257	ENST00000436443		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-3CDS	ENST00000534257	ENST00000342788		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-3CDS	ENST00000534257	ENST00000402597		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
5UTR-intron	ENST00000534257	ENST00000484474		TCGA	RV	HNSC	TCGA-CV-6935-01A	ATAD2	chr8	124381298	-	ERBB4	chr2	212530202	-
Frame-shit	ENST00000382518	ENST00000404984		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382518	ENST00000402050		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382518	ENST00000438376		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382518	ENST00000325979		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000382518	ENST00000497572		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000009180	ENST00000404984		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000009180	ENST00000402050		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000009180	ENST00000438376		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000009180	ENST00000325979		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000009180	ENST00000497572		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382515	ENST00000404984		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382515	ENST00000402050		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382515	ENST00000438376		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000382515	ENST00000325979		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000382515	ENST00000497572		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000481267	ENST00000404984		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000481267	ENST00000402050		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000481267	ENST00000438376		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000481267	ENST00000325979		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000481267	ENST00000497572		TCGA	RV	HNSC	TCGA-HD-7229-01A	CD9	chr12	6347427	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000360467	ENST00000369360		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
Frame-shit	ENST00000360467	ENST00000360478		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
Frame-shit	ENST00000360467	ENST00000359988		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
Frame-shit	ENST00000360467	ENST00000369358		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
intron-3CDS	ENST00000462309	ENST00000369360		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
intron-3CDS	ENST00000462309	ENST00000360478		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
intron-3CDS	ENST00000462309	ENST00000359988		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
intron-3CDS	ENST00000462309	ENST00000369358		TCGA	RV	HNSC	TCGA-HD-8224-01A	COL4A2	chr13	111144524	+	NRAP	chr10	115348838	-
5UTR-3CDS	ENST00000473039	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
5UTR-3CDS	ENST00000473039	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
In-frame	ENST00000373624	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
In-frame	ENST00000373624	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000542603	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000542603	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
In-frame	ENST00000394219	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
In-frame	ENST00000394219	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
In-frame	ENST00000373620	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
In-frame	ENST00000373620	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000394215	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000394215	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000373618	ENST00000537618		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
Frame-shit	ENST00000373618	ENST00000373768		TCGA	RV	HNSC	TCGA-H7-A76A-01A	DENND1A	chr9	126371715	-	NDUFA8	chr9	124914687	-
intron-3CDS	ENST00000508032	ENST00000345843		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-3CDS	ENST00000508032	ENST00000342295		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-3CDS	ENST00000508032	ENST00000361572		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-3CDS	ENST00000508032	ENST00000348160		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-3CDS	ENST00000508032	ENST00000355476		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-3UTR	ENST00000508032	ENST00000511401		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-5UTR	ENST00000508032	ENST00000507561		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-5UTR	ENST00000508032	ENST00000504907		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
intron-5UTR	ENST00000508032	ENST00000342320		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
Frame-shit	ENST00000336812	ENST00000345843		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
Frame-shit	ENST00000336812	ENST00000342295		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
Frame-shit	ENST00000336812	ENST00000361572		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
Frame-shit	ENST00000336812	ENST00000348160		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
Frame-shit	ENST00000336812	ENST00000355476		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
5CDS-3UTR	ENST00000336812	ENST00000511401		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
5CDS-5UTR	ENST00000336812	ENST00000507561		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
5CDS-5UTR	ENST00000336812	ENST00000504907		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
5CDS-5UTR	ENST00000336812	ENST00000342320		TCGA	RV	HNSC	TCGA-CV-7090-01A	DHX15	chr4	24550478	-	RBPJ	chr4	26387975	+
5CDS-intron	ENST00000268206	ENST00000538056		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000268206	ENST00000251108		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000268206	ENST00000496952		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000268206	ENST00000444959		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000359445	ENST00000538056		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000359445	ENST00000251108		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000359445	ENST00000496952		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-intron	ENST00000359445	ENST00000444959		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
intron-intron	ENST00000561331	ENST00000538056		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
intron-intron	ENST00000561331	ENST00000251108		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
intron-intron	ENST00000561331	ENST00000496952		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
intron-intron	ENST00000561331	ENST00000444959		TCGA	RV	HNSC	TCGA-CV-7102-01A	EFTUD1	chr15	82507058	-	CDADC1	chr13	49848427	+
5CDS-5UTR	ENST00000559624	ENST00000421388		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
5CDS-intron	ENST00000559624	ENST00000558647		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
5CDS-5UTR	ENST00000382727	ENST00000421388		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
5CDS-intron	ENST00000382727	ENST00000558647		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
5CDS-5UTR	ENST00000263791	ENST00000421388		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
5CDS-intron	ENST00000263791	ENST00000558647		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
intron-5UTR	ENST00000560648	ENST00000421388		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
intron-intron	ENST00000560648	ENST00000558647		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
intron-5UTR	ENST00000559311	ENST00000421388		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
intron-intron	ENST00000559311	ENST00000558647		TCGA	RV	HNSC	TCGA-CR-5243-01A	EIF2AK4	chr15	40241469	+	ANKRD34C	chr15	79585583	+
Frame-shit	ENST00000257209	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000257209	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
Frame-shit	ENST00000445677	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000445677	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
Frame-shit	ENST00000590592	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000590592	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
Frame-shit	ENST00000359247	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
5CDS-3UTR	ENST00000359247	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-3CDS	ENST00000591635	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-3UTR	ENST00000591635	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-3CDS	ENST00000592128	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-3UTR	ENST00000592128	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-3CDS	ENST00000587493	ENST00000261326		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-3UTR	ENST00000587493	ENST00000588132		TCGA	RV	HNSC	TCGA-T3-A92M-01A	FHOD3	chr18	33877963	+	MOCOS	chr18	33836931	+
intron-intron	ENST00000476233	ENST00000408982		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000476233	ENST00000262477		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000476233	ENST00000537505		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000476233	ENST00000546142		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000476233	ENST00000341923		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000476233	ENST00000570487		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000354667	ENST00000408982		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000354667	ENST00000262477		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000354667	ENST00000537505		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000354667	ENST00000546142		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000354667	ENST00000341923		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000354667	ENST00000570487		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000356674	ENST00000408982		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000356674	ENST00000262477		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000356674	ENST00000537505		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000356674	ENST00000546142		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000356674	ENST00000341923		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000356674	ENST00000570487		TCGA	RV	HNSC	TCGA-CN-6989-01A	HNRNPA2B1	chr7	26231467	-	RABEP1	chr17	5283828	+
Frame-shit	ENST00000361566	ENST00000524630		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529919		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000399039		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000360682		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000361796		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000361391		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000530094		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000428599		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000361332		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000527467		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000415361		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532245		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532463		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000528232		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529986		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000531014		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000358694		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000526772		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532787		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000533667		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529873		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000525902		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529526		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532649		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000426142		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532844		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000528621		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000399050		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000526357		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000530748		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000534579		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000526938		TCGA	RV	HNSC	TCGA-CQ-6225-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
5CDS-5UTR	ENST00000294304	ENST00000247956		TCGA	RV	HNSC	TCGA-IQ-7631-01A	LRP5	chr11	68080273	+	ZNF317	chr19	9266601	+
5CDS-5UTR	ENST00000294304	ENST00000360385		TCGA	RV	HNSC	TCGA-IQ-7631-01A	LRP5	chr11	68080273	+	ZNF317	chr19	9266601	+
intron-5UTR	ENST00000529481	ENST00000247956		TCGA	RV	HNSC	TCGA-IQ-7631-01A	LRP5	chr11	68080273	+	ZNF317	chr19	9266601	+
intron-5UTR	ENST00000529481	ENST00000360385		TCGA	RV	HNSC	TCGA-IQ-7631-01A	LRP5	chr11	68080273	+	ZNF317	chr19	9266601	+
5CDS-5UTR	ENST00000255681	ENST00000394532		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-5UTR	ENST00000255681	ENST00000309032		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-intron	ENST00000255681	ENST00000544785		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-5UTR	ENST00000255681	ENST00000394531		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-5UTR	ENST00000538595	ENST00000394532		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-5UTR	ENST00000538595	ENST00000309032		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-intron	ENST00000538595	ENST00000544785		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5UTR-5UTR	ENST00000538595	ENST00000394531		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	MACROD1	chr11	63918711	-	BAD	chr11	64051848	-
5CDS-intron	ENST00000360284	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-intron	ENST00000360284	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-5UTR	ENST00000360284	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-intron	ENST00000545748	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-intron	ENST00000545748	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-5UTR	ENST00000545748	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-intron	ENST00000550082	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-intron	ENST00000550082	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
5CDS-5UTR	ENST00000550082	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000547206	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000547206	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-5UTR	ENST00000547206	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000243050	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000243050	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-5UTR	ENST00000243050	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000394825	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000394825	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-5UTR	ENST00000394825	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000394824	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000394824	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-5UTR	ENST00000394824	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000548232	ENST00000484501		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-intron	ENST00000548232	ENST00000329582		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
intron-5UTR	ENST00000548232	ENST00000309741		TCGA	RV	HNSC	TCGA-BA-6871-01A	NR4A1	chr12	52435713	+	IL20RB	chr3	136699308	+
In-frame	ENST00000393923	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
In-frame	ENST00000393923	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
5CDS-intron	ENST00000393923	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000412622	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000412622	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000412622	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000431670	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000431670	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000431670	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000393925	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000393925	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000393925	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000481953	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000481953	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000481953	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000495180	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000495180	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000495180	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000478922	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000478922	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000478922	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000477695	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000477695	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000477695	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000470699	ENST00000352690		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000470699	ENST00000283285		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-intron	ENST00000470699	ENST00000438817		TCGA	RV	HNSC	TCGA-BA-5555-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111366390	+
intron-3CDS	ENST00000548961	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000548961	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-intron	ENST00000548961	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000427314	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000427314	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-intron	ENST00000427314	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000312377	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000312377	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-intron	ENST00000312377	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000434422	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000434422	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-intron	ENST00000434422	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000454520	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000454520	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-intron	ENST00000454520	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000551016	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000551016	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-intron	ENST00000551016	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000547905	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-3CDS	ENST00000547905	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-intron	ENST00000547905	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000547061	ENST00000317551		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-3CDS	ENST00000547061	ENST00000422340		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
intron-intron	ENST00000547061	ENST00000547852		TCGA	RV	HNSC	TCGA-BB-7862-01A	RACGAP1	chr12	50419181	-	CERS5	chr12	50537840	-
5UTR-5UTR	ENST00000353383	ENST00000395782		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
5UTR-5UTR	ENST00000353383	ENST00000395783		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
5UTR-5UTR	ENST00000353383	ENST00000435340		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
5UTR-5UTR	ENST00000353383	ENST00000255389		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
5UTR-5UTR	ENST00000353383	ENST00000395781		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
5UTR-intron	ENST00000353383	ENST00000484838		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000489697	ENST00000395782		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000489697	ENST00000395783		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000489697	ENST00000435340		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000489697	ENST00000255389		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000489697	ENST00000395781		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-intron	ENST00000489697	ENST00000484838		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000261641	ENST00000395782		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000261641	ENST00000395783		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000261641	ENST00000435340		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000261641	ENST00000255389		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-5UTR	ENST00000261641	ENST00000395781		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
intron-intron	ENST00000261641	ENST00000484838		TCGA	RV	HNSC	TCGA-BA-6869-01A	RAI1	chr17	17627473	+	PEMT	chr17	17480341	-
In-frame	ENST00000327155	ENST00000269142		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000327155	ENST00000400466		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000327155	ENST00000578121		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000399722	ENST00000269142		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000399722	ENST00000400466		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000399722	ENST00000578121		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000399725	ENST00000269142		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000399725	ENST00000400466		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000399725	ENST00000578121		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000360790	ENST00000269142		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000360790	ENST00000400466		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
In-frame	ENST00000360790	ENST00000578121		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
intron-3CDS	ENST00000581687	ENST00000269142		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
intron-3CDS	ENST00000581687	ENST00000400466		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
intron-3CDS	ENST00000581687	ENST00000578121		TCGA	RV	HNSC	TCGA-BB-7872-01A	RBBP8	chr18	20516923	+	TAF4B	chr18	23845134	+
5CDS-intron	ENST00000549920	ENST00000556679		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000456570		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000477310		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000425368		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000497841		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000417261		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000427888		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000459734		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000455591		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000433503		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000474621		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000424727		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000436692		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000473139		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000399981		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000419920		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000465211		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000375455		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000489605		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000426239		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000419411		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000549920	ENST00000460958		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000556679		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000456570		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000477310		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000425368		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000497841		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000417261		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000427888		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000459734		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000455591		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000433503		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000474621		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000424727		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000436692		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000473139		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000399981		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000419920		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000465211		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000375455		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000489605		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000426239		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000419411		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000550645	ENST00000460958		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000556679		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000456570		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000477310		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000425368		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000497841		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000417261		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000427888		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000459734		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000455591		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000433503		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000474621		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000424727		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000436692		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000473139		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000399981		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000419920		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000465211		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000375455		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000489605		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000426239		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000419411		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000552588	ENST00000460958		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000556679		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000456570		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000477310		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000425368		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000497841		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000417261		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000427888		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000459734		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000455591		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000433503		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000474621		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000424727		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000436692		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000473139		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000399981		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000419920		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000465211		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000375455		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000489605		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000426239		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000419411		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-intron	ENST00000549273	ENST00000460958		TCGA	RV	HNSC	TCGA-CR-7376-01A	RPL18	chr19	49118585	-	CFB	chr6	31913427	+
intron-3CDS	ENST00000456518	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000456518	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000456518	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000456518	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000456518	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000456518	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000397174	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000397174	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000397174	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000397174	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000397174	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000397174	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000402904	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000402904	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000402904	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000402904	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000402904	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000402904	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000361191	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000361191	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000361191	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000361191	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000361191	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000361191	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000397171	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000397171	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000397171	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000397171	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000397171	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000397171	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000361705	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000361705	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000361705	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000361705	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000361705	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000361705	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000326197	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000326197	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000326197	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000326197	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000326197	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000326197	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000372595	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000372595	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000372595	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000372595	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000372595	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000372595	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
Frame-shit	ENST00000337495	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000337495	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000337495	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000337495	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000337495	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000337495	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-3CDS	ENST00000372596	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-5UTR	ENST00000372596	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-intron	ENST00000372596	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-intron	ENST00000372596	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-5UTR	ENST00000372596	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-5UTR	ENST00000372596	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-3CDS	ENST00000372597	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-5UTR	ENST00000372597	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-intron	ENST00000372597	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-intron	ENST00000372597	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-5UTR	ENST00000372597	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
5UTR-5UTR	ENST00000372597	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000472037	ENST00000296444		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000472037	ENST00000444115		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000472037	ENST00000426002		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000472037	ENST00000465449		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000472037	ENST00000442747		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000472037	ENST00000443308		TCGA	RV	HNSC	TCGA-CR-7397-01A	SCMH1	chr1	41651793	-	SHISA5	chr3	48538726	-
Frame-shit	ENST00000360168	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000360168	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000360168	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000360168	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000358945	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000358945	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000358945	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000358945	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000540037	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
In-frame	ENST00000540037	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000540037	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000540037	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
In-frame	ENST00000228916	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000228916	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000228916	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000228916	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
3UTR-3CDS	ENST00000396966	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
3UTR-3CDS	ENST00000396966	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
3UTR-intron	ENST00000396966	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
3UTR-intron	ENST00000396966	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000543768	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
Frame-shit	ENST00000543768	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000543768	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5CDS-intron	ENST00000543768	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
intron-3CDS	ENST00000538979	ENST00000280665		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
intron-3CDS	ENST00000538979	ENST00000397173		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
intron-intron	ENST00000538979	ENST00000541700		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
intron-intron	ENST00000538979	ENST00000540622		TCGA	RV	HNSC	TCGA-BA-6871-01A	SCNN1A	chr12	6457893	-	DCP1B	chr12	2055452	-
5UTR-3CDS	ENST00000357395	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5UTR-3CDS	ENST00000357395	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5UTR-3CDS	ENST00000357395	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5UTR-5UTR	ENST00000357395	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5UTR-intron	ENST00000357395	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000358025	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000358025	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000358025	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5CDS-5UTR	ENST00000358025	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5CDS-intron	ENST00000358025	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000344113	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000344113	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000344113	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5CDS-5UTR	ENST00000344113	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5CDS-intron	ENST00000344113	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000341472	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000341472	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000341472	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000341472	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000341472	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000356081	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000356081	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000356081	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000356081	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000356081	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000554584	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000554584	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000554584	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5CDS-5UTR	ENST00000554584	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
5CDS-intron	ENST00000554584	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000555002	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000555002	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000555002	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000555002	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000555002	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000394768	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000394768	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000394768	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000394768	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000394768	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000556725	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000556725	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000556725	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000556725	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000556725	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000553455	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000553455	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000553455	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000553455	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000553455	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000555022	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000555022	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000555022	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000555022	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000555022	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000554805	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000554805	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000554805	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000554805	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000554805	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000458046	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000458046	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000458046	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000458046	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000458046	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000441438	ENST00000267615		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000441438	ENST00000354313		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-3CDS	ENST00000441438	ENST00000556603		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-5UTR	ENST00000441438	ENST00000555495		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
intron-intron	ENST00000441438	ENST00000556954		TCGA	RV	HNSC	TCGA-CQ-6229-01A	SYNE2	chr14	64486811	+	ITPK1	chr14	93460342	-
In-frame	ENST00000337137	ENST00000323205		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000337137	ENST00000248924		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
5CDS-intron	ENST00000337137	ENST00000415371		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
intron-3CDS	ENST00000380995	ENST00000323205		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
intron-3CDS	ENST00000380995	ENST00000248924		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
intron-intron	ENST00000380995	ENST00000415371		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000407381	ENST00000323205		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000407381	ENST00000248924		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
5CDS-intron	ENST00000407381	ENST00000415371		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000355704	ENST00000323205		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000355704	ENST00000248924		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
5CDS-intron	ENST00000355704	ENST00000415371		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
intron-3CDS	ENST00000472791	ENST00000323205		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
intron-3CDS	ENST00000472791	ENST00000248924		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
intron-intron	ENST00000472791	ENST00000415371		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000406733	ENST00000323205		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
In-frame	ENST00000406733	ENST00000248924		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
5CDS-intron	ENST00000406733	ENST00000415371		TCGA	RV	HNSC	TCGA-CV-6941-01A	TBC1D22A	chr22	47393605	+	GCAT	chr22	38206034	+
5CDS-5UTR	ENST00000378308	ENST00000498078		TCGA	RV	HNSC	TCGA-CV-6953-01A	USP9X	chrX	41022130	+	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000378308	ENST00000323563		TCGA	RV	HNSC	TCGA-CV-6953-01A	USP9X	chrX	41022130	+	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000324545	ENST00000498078		TCGA	RV	HNSC	TCGA-CV-6953-01A	USP9X	chrX	41022130	+	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000324545	ENST00000323563		TCGA	RV	HNSC	TCGA-CV-6953-01A	USP9X	chrX	41022130	+	MRPS31	chr13	41303737	-
In-frame	ENST00000323116	ENST00000420415		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
In-frame	ENST00000323116	ENST00000360110		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
5CDS-3UTR	ENST00000323116	ENST00000540528		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
5CDS-3UTR	ENST00000323116	ENST00000392396		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
5CDS-3UTR	ENST00000323116	ENST00000535031		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
5CDS-5UTR	ENST00000323116	ENST00000465288		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3CDS	ENST00000493826	ENST00000420415		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3CDS	ENST00000493826	ENST00000360110		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3UTR	ENST00000493826	ENST00000540528		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3UTR	ENST00000493826	ENST00000392396		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3UTR	ENST00000493826	ENST00000535031		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-5UTR	ENST00000493826	ENST00000465288		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3CDS	ENST00000482794	ENST00000420415		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3CDS	ENST00000482794	ENST00000360110		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3UTR	ENST00000482794	ENST00000540528		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3UTR	ENST00000482794	ENST00000392396		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-3UTR	ENST00000482794	ENST00000535031		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
intron-5UTR	ENST00000482794	ENST00000465288		TCGA	RV	HNSC	TCGA-CV-6937-01A	ATP11B	chr3	182587119	+	TFRC	chr3	195785503	-
In-frame	ENST00000399782	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5CDS-intron	ENST00000399782	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
In-frame	ENST00000317582	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5CDS-intron	ENST00000317582	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5UTR-3CDS	ENST00000543133	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5UTR-intron	ENST00000543133	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
Frame-shit	ENST00000538149	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5CDS-intron	ENST00000538149	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5UTR-3CDS	ENST00000337612	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5UTR-intron	ENST00000337612	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
In-frame	ENST00000493680	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5CDS-intron	ENST00000493680	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
In-frame	ENST00000355028	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5CDS-intron	ENST00000355028	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
In-frame	ENST00000418951	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
5CDS-intron	ENST00000418951	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
intron-3CDS	ENST00000485631	ENST00000261726		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
intron-intron	ENST00000485631	ENST00000551604		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	BCL2L13	chr22	18138598	+	CUX2	chr12	111772245	+
In-frame	ENST00000349769	ENST00000526054		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
Frame-shit	ENST00000349769	ENST00000529182		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
In-frame	ENST00000349769	ENST00000377348		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
Frame-shit	ENST00000349769	ENST00000292510		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
5CDS-intron	ENST00000349769	ENST00000526734		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
intron-3CDS	ENST00000531727	ENST00000526054		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
intron-3CDS	ENST00000531727	ENST00000529182		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
intron-3CDS	ENST00000531727	ENST00000377348		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
intron-3CDS	ENST00000531727	ENST00000292510		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
intron-intron	ENST00000531727	ENST00000526734		TCGA	RV	HNSC	TCGA-P3-A5QF-01A	CPSF1	chr8	145624978	-	VPS28	chr8	145649305	-
5UTR-3CDS	ENST00000473039	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
Frame-shit	ENST00000373624	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
In-frame	ENST00000542603	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
Frame-shit	ENST00000394219	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
Frame-shit	ENST00000373620	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
In-frame	ENST00000394215	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
In-frame	ENST00000373618	ENST00000372469		TCGA	RV	HNSC	TCGA-CV-7438-01A	DENND1A	chr9	126345448	-	PRRX2	chr9	132481510	+
5UTR-3CDS	ENST00000351989	ENST00000400358		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
5UTR-3CDS	ENST00000351989	ENST00000400359		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
5UTR-intron	ENST00000351989	ENST00000470591		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
5UTR-3CDS	ENST00000383024	ENST00000400358		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
5UTR-3CDS	ENST00000383024	ENST00000400359		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
5UTR-intron	ENST00000383024	ENST00000470591		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
intron-3CDS	ENST00000407755	ENST00000400358		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
intron-3CDS	ENST00000407755	ENST00000400359		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
intron-intron	ENST00000407755	ENST00000470591		TCGA	RV	HNSC	TCGA-CV-6948-01A	DGCR8	chr22	20067906	+	SGSM1	chr22	25240864	+
intron-3CDS	ENST00000311172	ENST00000526355		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000311172	ENST00000282249		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000311172	ENST00000347596		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000409314	ENST00000526355		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000409314	ENST00000282249		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000409314	ENST00000347596		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000409418	ENST00000526355		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000409418	ENST00000282249		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
Frame-shit	ENST00000409418	ENST00000347596		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5UTR-3CDS	ENST00000458644	ENST00000526355		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5UTR-3CDS	ENST00000458644	ENST00000282249		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5UTR-3CDS	ENST00000458644	ENST00000347596		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5UTR-3CDS	ENST00000409853	ENST00000526355		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5UTR-3CDS	ENST00000409853	ENST00000282249		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5UTR-3CDS	ENST00000409853	ENST00000347596		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000409263	ENST00000526355		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000409263	ENST00000282249		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
intron-3CDS	ENST00000409263	ENST00000347596		TCGA	RV	HNSC	TCGA-CN-5367-01A	FCHSD2	chr11	72851076	-	GUCY1A2	chr11	106856857	-
5CDS-3UTR	ENST00000251808	ENST00000478111		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5CDS-5UTR	ENST00000251808	ENST00000420995		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5CDS-5UTR	ENST00000251808	ENST00000378182		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5CDS-5UTR	ENST00000251808	ENST00000356017		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5CDS-5UTR	ENST00000251808	ENST00000457662		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5CDS-intron	ENST00000251808	ENST00000298772		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5UTR-3UTR	ENST00000395927	ENST00000478111		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5UTR-5UTR	ENST00000395927	ENST00000420995		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5UTR-5UTR	ENST00000395927	ENST00000378182		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5UTR-5UTR	ENST00000395927	ENST00000356017		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5UTR-5UTR	ENST00000395927	ENST00000457662		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
5UTR-intron	ENST00000395927	ENST00000298772		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
intron-3UTR	ENST00000517674	ENST00000478111		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
intron-5UTR	ENST00000517674	ENST00000420995		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
intron-5UTR	ENST00000517674	ENST00000378182		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
intron-5UTR	ENST00000517674	ENST00000356017		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
intron-5UTR	ENST00000517674	ENST00000457662		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
intron-intron	ENST00000517674	ENST00000298772		TCGA	RV	HNSC	TCGA-CV-7253-01A	GRHL2	chr8	102505017	+	TRIM13	chr13	50571803	+
In-frame	ENST00000256458	ENST00000383836		TCGA	RV	HNSC	TCGA-CV-7430-01A	IRAK2	chr3	10206732	+	SRGAP3	chr3	9166601	-
In-frame	ENST00000256458	ENST00000360413		TCGA	RV	HNSC	TCGA-CV-7430-01A	IRAK2	chr3	10206732	+	SRGAP3	chr3	9166601	-
5CDS-5UTR	ENST00000256458	ENST00000433332		TCGA	RV	HNSC	TCGA-CV-7430-01A	IRAK2	chr3	10206732	+	SRGAP3	chr3	9166601	-
5UTR-5UTR	ENST00000399353	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399353	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399353	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399353	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399353	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399353	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399353	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000381318	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381318	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381318	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381318	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381318	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381318	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381318	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000381291	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381291	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381291	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381291	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381291	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381291	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381291	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000381285	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381285	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381285	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381285	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381285	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381285	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000381285	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000399367	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399367	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399367	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399367	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399367	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399367	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399367	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000399352	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399352	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399352	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399352	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399352	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399352	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399352	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000399355	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399355	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399355	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399355	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399355	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399355	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399355	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-5UTR	ENST00000399349	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399349	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399349	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399349	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399349	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399349	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
5UTR-intron	ENST00000399349	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-5UTR	ENST00000399338	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399338	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399338	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399338	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399338	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399338	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399338	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-5UTR	ENST00000379960	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000379960	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000379960	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000379960	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000379960	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000379960	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000379960	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-5UTR	ENST00000437442	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000437442	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000437442	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000437442	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000437442	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000437442	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000437442	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-5UTR	ENST00000399326	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399326	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399326	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399326	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399326	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399326	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000399326	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-5UTR	ENST00000488166	ENST00000400128		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000488166	ENST00000400131		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000488166	ENST00000400135		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000488166	ENST00000400127		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000488166	ENST00000338326		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000488166	ENST00000299295		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
intron-intron	ENST00000488166	ENST00000543733		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	ITSN1	chr21	35015019	+	CHODL	chr21	19289537	+
Frame-shit	ENST00000222644	ENST00000313367		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000222644	ENST00000431825		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000222644	ENST00000352860		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000222644	ENST00000353930		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000222644	ENST00000396431		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000222644	ENST00000409069		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000222644	ENST00000396429		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
5CDS-intron	ENST00000222644	ENST00000487020		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000313367		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000431825		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000352860		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000353930		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000396431		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000409069		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-3CDS	ENST00000409761	ENST00000396429		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
intron-intron	ENST00000409761	ENST00000487020		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000313367		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000431825		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000352860		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000353930		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000396431		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000409069		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
Frame-shit	ENST00000396475	ENST00000396429		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
5CDS-intron	ENST00000396475	ENST00000487020		TCGA	RV	HNSC	TCGA-CV-7248-01A	MPP6	chr7	24663403	+	OSBPL3	chr7	24903218	-
5UTR-5UTR	ENST00000339562	ENST00000310454		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000339562	ENST00000409125		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000339562	ENST00000438166		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000339562	ENST00000540309		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000339562	ENST00000409674		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-intron	ENST00000339562	ENST00000496190		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000426264	ENST00000310454		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000426264	ENST00000409125		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000426264	ENST00000438166		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000426264	ENST00000540309		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000426264	ENST00000409674		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-intron	ENST00000426264	ENST00000496190		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409572	ENST00000310454		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409572	ENST00000409125		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409572	ENST00000438166		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409572	ENST00000540309		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409572	ENST00000409674		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-intron	ENST00000409572	ENST00000496190		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000539077	ENST00000310454		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000539077	ENST00000409125		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000539077	ENST00000438166		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000539077	ENST00000540309		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
intron-5UTR	ENST00000539077	ENST00000409674		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
intron-intron	ENST00000539077	ENST00000496190		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409108	ENST00000310454		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409108	ENST00000409125		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409108	ENST00000438166		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409108	ENST00000540309		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000409108	ENST00000409674		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-intron	ENST00000409108	ENST00000496190		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000429376	ENST00000310454		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000429376	ENST00000409125		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000429376	ENST00000438166		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000429376	ENST00000540309		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-5UTR	ENST00000429376	ENST00000409674		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
5UTR-intron	ENST00000429376	ENST00000496190		TCGA	RV	HNSC	TCGA-HD-A634-01A	NR4A2	chr2	157187180	-	GPD2	chr2	157332610	+
In-frame	ENST00000227638	ENST00000315765		TCGA	RV	HNSC	TCGA-CQ-5332-01A	PANX1	chr11	93862659	+	HEPHL1	chr11	93844703	+
In-frame	ENST00000436171	ENST00000315765		TCGA	RV	HNSC	TCGA-CQ-5332-01A	PANX1	chr11	93862659	+	HEPHL1	chr11	93844703	+
intron-3CDS	ENST00000424085	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-3CDS	ENST00000424085	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-3CDS	ENST00000424085	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-intron	ENST00000424085	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000257075	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000257075	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000257075	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000257075	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000373747	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000373747	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000373747	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000373747	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000426105	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000426105	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000426105	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000426105	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000440538	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000440538	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000440538	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000440538	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
Frame-shit	ENST00000373741	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
Frame-shit	ENST00000373741	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
Frame-shit	ENST00000373741	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000373741	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000423018	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000423018	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
In-frame	ENST00000423018	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000423018	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
Frame-shit	ENST00000373742	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
Frame-shit	ENST00000373742	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
Frame-shit	ENST00000373742	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5CDS-intron	ENST00000373742	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-3CDS	ENST00000490546	ENST00000264229		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-3CDS	ENST00000490546	ENST00000541073		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-3CDS	ENST00000490546	ENST00000504228		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
intron-intron	ENST00000490546	ENST00000505410		TCGA	RV	HNSC	TCGA-BB-7861-01A	PUM1	chr1	31465237	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000286827	ENST00000400314		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000286827	ENST00000400310		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000286827	ENST00000449640		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000286827	ENST00000400309		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000286827	ENST00000400308		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-intron	ENST00000286827	ENST00000400304		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-intron	ENST00000286827	ENST00000423045		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-3CDS	ENST00000541036	ENST00000400314		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-3CDS	ENST00000541036	ENST00000400310		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-3CDS	ENST00000541036	ENST00000449640		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-3CDS	ENST00000541036	ENST00000400309		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-3CDS	ENST00000541036	ENST00000400308		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-intron	ENST00000541036	ENST00000400304		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
intron-intron	ENST00000541036	ENST00000423045		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000469412	ENST00000400314		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000469412	ENST00000400310		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000469412	ENST00000449640		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000469412	ENST00000400309		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-3CDS	ENST00000469412	ENST00000400308		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-intron	ENST00000469412	ENST00000400304		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
5UTR-intron	ENST00000469412	ENST00000423045		TCGA	RV	HNSC	TCGA-CR-7367-01A	TIAM1	chr21	32711558	-	PCBP3	chr21	47316122	+
Frame-shit	ENST00000265069	ENST00000283426		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	ZFR	chr5	32379221	-	PLEKHG4B	chr5	181629	+
5UTR-3CDS	ENST00000510369	ENST00000283426		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	ZFR	chr5	32379221	-	PLEKHG4B	chr5	181629	+
In-frame	ENST00000356860	ENST00000454872		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
5CDS-intron	ENST00000356860	ENST00000473253		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
In-frame	ENST00000356253	ENST00000454872		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
5CDS-intron	ENST00000356253	ENST00000473253		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
In-frame	ENST00000423588	ENST00000454872		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
5CDS-intron	ENST00000423588	ENST00000473253		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
intron-3CDS	ENST00000464354	ENST00000454872		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
intron-intron	ENST00000464354	ENST00000473253		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
intron-3CDS	ENST00000535308	ENST00000454872		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
intron-intron	ENST00000535308	ENST00000473253		TCGA	RV	HNSC	TCGA-CN-4723-01A	CACNA2D1	chr7	81964451	-	NAALADL2	chr3	175455094	+
In-frame	ENST00000596435	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000596435	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000596435	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000596435	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000596435	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
In-frame	ENST00000344019	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000344019	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000344019	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000344019	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000344019	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
In-frame	ENST00000597551	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000597551	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000597551	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000597551	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000597551	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
In-frame	ENST00000204637	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000204637	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000204637	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000204637	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000204637	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
In-frame	ENST00000600429	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000600429	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000600429	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000600429	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000600429	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
In-frame	ENST00000594009	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000594009	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000594009	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000594009	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000594009	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
In-frame	ENST00000595510	ENST00000293350		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000595510	ENST00000540132		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000595510	ENST00000455361		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000595510	ENST00000433981		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000595510	ENST00000598015		TCGA	RV	HNSC	TCGA-CN-4736-01A	FLT3LG	chr19	49979823	+	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000252242	ENST00000360359		TCGA	RV	HNSC	TCGA-CV-6937-01A	KRT5	chr12	52908361	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000252242	ENST00000535627		TCGA	RV	HNSC	TCGA-CV-6937-01A	KRT5	chr12	52908361	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000252242	ENST00000470698		TCGA	RV	HNSC	TCGA-CV-6937-01A	KRT5	chr12	52908361	-	ANKS1A	chr6	34977682	+
In-frame	ENST00000361828	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361828	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361828	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361828	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361828	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361510	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361510	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361510	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361510	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361510	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361150	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361150	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361150	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361150	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361150	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361715	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361715	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361715	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361715	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361715	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361908	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361908	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000361908	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361908	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000361908	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000392438	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000392438	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000392438	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000392438	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
5CDS-intron	ENST00000392438	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
intron-3CDS	ENST00000487986	ENST00000392443		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
intron-3CDS	ENST00000487986	ENST00000342695		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
intron-3CDS	ENST00000487986	ENST00000295548		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
intron-intron	ENST00000487986	ENST00000400270		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
intron-intron	ENST00000487986	ENST00000482964		TCGA	RV	HNSC	TCGA-CV-7434-01A	OPA1	chr3	193311198	+	ATP13A4	chr3	193177020	-
In-frame	ENST00000342435	ENST00000217246		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
In-frame	ENST00000342435	ENST00000310348		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000342435	ENST00000464883		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000342435	ENST00000402914		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000342435	ENST00000378058		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000342435	ENST00000407045		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
In-frame	ENST00000448205	ENST00000217246		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
In-frame	ENST00000448205	ENST00000310348		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448205	ENST00000464883		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448205	ENST00000402914		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448205	ENST00000378058		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448205	ENST00000407045		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
In-frame	ENST00000487389	ENST00000217246		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
In-frame	ENST00000487389	ENST00000310348		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000487389	ENST00000464883		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000487389	ENST00000402914		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000487389	ENST00000378058		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000487389	ENST00000407045		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000448787	ENST00000217246		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
Frame-shit	ENST00000448787	ENST00000310348		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448787	ENST00000464883		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448787	ENST00000402914		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448787	ENST00000378058		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
5CDS-intron	ENST00000448787	ENST00000407045		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
intron-3CDS	ENST00000484560	ENST00000217246		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
intron-3CDS	ENST00000484560	ENST00000310348		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
intron-intron	ENST00000484560	ENST00000464883		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
intron-intron	ENST00000484560	ENST00000402914		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
intron-intron	ENST00000484560	ENST00000378058		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
intron-intron	ENST00000484560	ENST00000407045		TCGA	RV	HNSC	TCGA-QK-A6V9-01A	PLSCR1	chr3	146234793	-	MACROD2	chr20	16021846	+
In-frame	ENST00000518852	ENST00000356766		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000518852	ENST00000521356		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000518852	ENST00000454009		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000240139	ENST00000356766		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000240139	ENST00000521356		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000240139	ENST00000454009		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000289963	ENST00000356766		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000289963	ENST00000521356		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000289963	ENST00000454009		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000397775	ENST00000356766		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000397775	ENST00000521356		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
In-frame	ENST00000397775	ENST00000454009		TCGA	RV	HNSC	TCGA-CN-4731-01A	PPP3CC	chr8	22333137	+	PIWIL2	chr8	22138633	+
intron-intron	ENST00000368708	ENST00000518164		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000521291		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000396070		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000287038		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000523172		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000518164		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000521291		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000396070		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000287038		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000523172		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000518164		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000521291		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000396070		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000287038		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000523172		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000518164		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000521291		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000396070		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000287038		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000523172		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000518164		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000521291		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000396070		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000287038		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000523172		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000518164		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000521291		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000396070		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000287038		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000523172		TCGA	RV	HNSC	TCGA-CV-7434-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5UTR-3CDS	ENST00000361781	ENST00000327946		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
5UTR-intron	ENST00000361781	ENST00000536331		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
5UTR-intron	ENST00000361781	ENST00000552278		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-3CDS	ENST00000429490	ENST00000327946		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-intron	ENST00000429490	ENST00000536331		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-intron	ENST00000429490	ENST00000552278		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-3CDS	ENST00000492601	ENST00000327946		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-intron	ENST00000492601	ENST00000536331		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-intron	ENST00000492601	ENST00000552278		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-3CDS	ENST00000361543	ENST00000327946		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-intron	ENST00000361543	ENST00000536331		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
intron-intron	ENST00000361543	ENST00000552278		TCGA	RV	HNSC	TCGA-BA-6868-01B	SGMS1	chr10	52226650	-	GRID1	chr10	87675996	-
Frame-shit	ENST00000394817	ENST00000302060		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
5CDS-intron	ENST00000394817	ENST00000505268		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
Frame-shit	ENST00000265195	ENST00000302060		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
5CDS-intron	ENST00000265195	ENST00000505268		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
Frame-shit	ENST00000509534	ENST00000302060		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
5CDS-intron	ENST00000509534	ENST00000505268		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
intron-3CDS	ENST00000515008	ENST00000302060		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
intron-intron	ENST00000515008	ENST00000505268		TCGA	RV	HNSC	TCGA-CN-A63T-01A	SIL1	chr5	138456724	-	DNAJC18	chr5	138749961	-
5CDS-5UTR	ENST00000317635	ENST00000536252		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5CDS-intron	ENST00000317635	ENST00000545103		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000317635	ENST00000540348		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000317635	ENST00000543944		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000317635	ENST00000297661		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000317635	ENST00000379186		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000317635	ENST00000359544		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000584432	ENST00000536252		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-intron	ENST00000584432	ENST00000545103		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000584432	ENST00000540348		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000584432	ENST00000543944		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000584432	ENST00000297661		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000584432	ENST00000379186		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000584432	ENST00000359544		TCGA	RV	HNSC	TCGA-DQ-5629-01A	TMEM11	chr17	21117404	-	UBAP1	chr9	34220906	+
5UTR-3CDS	ENST00000446856	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000446856	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000446856	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000446856	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-intron	ENST00000446856	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000264758	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000264758	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000264758	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000264758	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-intron	ENST00000264758	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000398125	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000398125	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000398125	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000398125	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-intron	ENST00000398125	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000513328	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000513328	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000513328	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000513328	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-intron	ENST00000513328	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000503455	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000503455	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000503455	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000503455	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
5UTR-intron	ENST00000503455	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000355842	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000355842	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000355842	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000355842	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-intron	ENST00000355842	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398123	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398123	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398123	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398123	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-intron	ENST00000398123	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398129	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398129	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398129	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000398129	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-intron	ENST00000398129	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000538860	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000538860	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000538860	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000538860	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
intron-intron	ENST00000538860	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-5978-01A	ADD1	chr4	2845751	+	ADK	chr10	76153899	+
3UTR-intron	ENST00000346329	ENST00000398158		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000346329	ENST00000398165		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000346329	ENST00000359624		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000346329	ENST00000352178		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000346329	ENST00000398168		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000346329	ENST00000544202		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000346329	ENST00000470912		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000398158		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000398165		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000359624		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000352178		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000398168		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000544202		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000301843	ENST00000470912		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000398158		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000398165		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000359624		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000352178		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000398168		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000544202		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000527622	ENST00000470912		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000398158		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000398165		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000359624		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000352178		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000398168		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000544202		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000376561	ENST00000470912		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000398158		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000398165		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000359624		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000352178		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000398168		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000544202		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
intron-intron	ENST00000538675	ENST00000470912		TCGA	RV	HNSC	TCGA-CV-5441-01A	CTTN	chr11	70282681	+	CBS	chr21	44476011	-
In-frame	ENST00000310974	ENST00000404826		TCGA	RV	HNSC	TCGA-CV-7437-01A	DPY19L1	chr7	35050080	-	SDK1	chr7	3861082	+
In-frame	ENST00000310974	ENST00000389531		TCGA	RV	HNSC	TCGA-CV-7437-01A	DPY19L1	chr7	35050080	-	SDK1	chr7	3861082	+
5CDS-intron	ENST00000310974	ENST00000466611		TCGA	RV	HNSC	TCGA-CV-7437-01A	DPY19L1	chr7	35050080	-	SDK1	chr7	3861082	+
intron-3CDS	ENST00000462134	ENST00000404826		TCGA	RV	HNSC	TCGA-CV-7437-01A	DPY19L1	chr7	35050080	-	SDK1	chr7	3861082	+
intron-3CDS	ENST00000462134	ENST00000389531		TCGA	RV	HNSC	TCGA-CV-7437-01A	DPY19L1	chr7	35050080	-	SDK1	chr7	3861082	+
intron-intron	ENST00000462134	ENST00000466611		TCGA	RV	HNSC	TCGA-CV-7437-01A	DPY19L1	chr7	35050080	-	SDK1	chr7	3861082	+
Frame-shit	ENST00000496972	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000496972	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000496972	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000496972	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000496972	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000496972	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000496972	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000496972	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000496972	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000405222	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000405222	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000405222	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407661	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000407661	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000407661	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000406818	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000406818	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000406818	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407038	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000407038	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000407038	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000404103	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000404103	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000404103	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000407186	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000407186	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000407186	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000288642	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000288642	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000288642	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
Frame-shit	ENST00000545439	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000545439	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
5CDS-intron	ENST00000545439	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000541284		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000451834		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000423368		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000361528		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000356162		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000428680		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-3CDS	ENST00000472690	ENST00000315544		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-intron	ENST00000472690	ENST00000473470		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
intron-intron	ENST00000472690	ENST00000414802		TCGA	RV	HNSC	TCGA-CV-7424-01A	DTNB	chr2	25674417	-	CNOT4	chr7	135107102	-
3UTR-3CDS	ENST00000462274	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
3UTR-3CDS	ENST00000462274	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
3UTR-5UTR	ENST00000462274	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
5UTR-3CDS	ENST00000338785	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
5UTR-3CDS	ENST00000338785	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
5UTR-5UTR	ENST00000338785	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000451934	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000451934	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-5UTR	ENST00000451934	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000321219	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000321219	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-5UTR	ENST00000321219	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000339659	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000339659	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-5UTR	ENST00000339659	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000398960	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000398960	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-5UTR	ENST00000398960	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000398956	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000398956	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-5UTR	ENST00000398956	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000455387	ENST00000290219		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-3CDS	ENST00000455387	ENST00000381995		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
intron-5UTR	ENST00000455387	ENST00000405436		TCGA	RV	HNSC	TCGA-D6-A4Z9-01A	DYRK1A	chr21	38739930	+	IFNGR2	chr21	34793787	+
In-frame	ENST00000388995	ENST00000284154		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
In-frame	ENST00000388995	ENST00000573099		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000388995	ENST00000395635		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000585154	ENST00000284154		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000585154	ENST00000573099		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000585154	ENST00000395635		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000345041	ENST00000284154		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000345041	ENST00000573099		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
In-frame	ENST00000345041	ENST00000395635		TCGA	RV	HNSC	TCGA-CV-5440-01A	FAM83G	chr17	18906833	-	GRAP	chr17	18925457	-
Frame-shit	ENST00000327171	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
Frame-shit	ENST00000560031	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
Frame-shit	ENST00000396509	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
Frame-shit	ENST00000543495	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
Frame-shit	ENST00000544523	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
Frame-shit	ENST00000559454	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
3UTR-3CDS	ENST00000561014	ENST00000340827		TCGA	RV	HNSC	TCGA-CQ-6228-01A	GALK2	chr15	49584734	+	C15orf43	chr15	45270687	+
Frame-shit	ENST00000535741	ENST00000409598		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000535741	ENST00000424281		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000535741	ENST00000304527		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000535741	ENST00000455740		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000535741	ENST00000409252		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000535741	ENST00000514152		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000535741	ENST00000427414		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000535741	ENST00000604030		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000409598		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000424281		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000304527		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000455740		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000409252		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000514152		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000510413	ENST00000427414		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000510413	ENST00000604030		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000409598		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000424281		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000304527		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000455740		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000409252		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000514152		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-3CDS	ENST00000503716	ENST00000427414		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
intron-intron	ENST00000503716	ENST00000604030		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000409598		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000424281		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000304527		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000455740		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000409252		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000514152		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000357115	ENST00000427414		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000357115	ENST00000604030		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000409598		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000424281		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000304527		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000455740		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000409252		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000514152		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
Frame-shit	ENST00000507224	ENST00000427414		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
5CDS-intron	ENST00000507224	ENST00000604030		TCGA	RV	HNSC	TCGA-BA-4074-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152070713	-
5UTR-3CDS	ENST00000571669	ENST00000540306		TCGA	RV	HNSC	TCGA-F7-8298-01A	METTL16	chr17	2376818	-	DHX8	chr17	41566817	+
5UTR-3CDS	ENST00000571669	ENST00000262415		TCGA	RV	HNSC	TCGA-F7-8298-01A	METTL16	chr17	2376818	-	DHX8	chr17	41566817	+
Frame-shit	ENST00000263092	ENST00000540306		TCGA	RV	HNSC	TCGA-F7-8298-01A	METTL16	chr17	2376818	-	DHX8	chr17	41566817	+
Frame-shit	ENST00000263092	ENST00000262415		TCGA	RV	HNSC	TCGA-F7-8298-01A	METTL16	chr17	2376818	-	DHX8	chr17	41566817	+
intron-3CDS	ENST00000538844	ENST00000540306		TCGA	RV	HNSC	TCGA-F7-8298-01A	METTL16	chr17	2376818	-	DHX8	chr17	41566817	+
intron-3CDS	ENST00000538844	ENST00000262415		TCGA	RV	HNSC	TCGA-F7-8298-01A	METTL16	chr17	2376818	-	DHX8	chr17	41566817	+
In-frame	ENST00000262370	ENST00000566228		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000262370	ENST00000323433		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000262370	ENST00000306030		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
5CDS-intron	ENST00000262370	ENST00000568359		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000415496	ENST00000566228		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000415496	ENST00000323433		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000415496	ENST00000306030		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
5CDS-intron	ENST00000415496	ENST00000568359		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000399577	ENST00000566228		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000399577	ENST00000323433		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000399577	ENST00000306030		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
5CDS-intron	ENST00000399577	ENST00000568359		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000588994	ENST00000566228		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000588994	ENST00000323433		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000588994	ENST00000306030		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
5CDS-intron	ENST00000588994	ENST00000568359		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000586183	ENST00000566228		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000586183	ENST00000323433		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
In-frame	ENST00000586183	ENST00000306030		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
5CDS-intron	ENST00000586183	ENST00000568359		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
intron-3CDS	ENST00000588015	ENST00000566228		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
intron-3CDS	ENST00000588015	ENST00000323433		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
intron-3CDS	ENST00000588015	ENST00000306030		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
intron-intron	ENST00000588015	ENST00000568359		TCGA	RV	HNSC	TCGA-CV-7102-01A	MGRN1	chr16	4715152	+	SNX29	chr16	12571576	+
5CDS-intron	ENST00000356175	ENST00000582674		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000328381		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000443677		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000324689		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000535306		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000582674		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000328381		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000443677		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000324689		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000535306		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000582674		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000328381		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000443677		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000324689		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000535306		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000582674		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000328381		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000443677		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000324689		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000535306		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000582674		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000328381		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000443677		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000324689		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000535306		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000582674		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000328381		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000443677		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000324689		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000535306		TCGA	RV	HNSC	TCGA-HL-7533-01A	NF1	chr17	29497015	+	RNF135	chr17	29324260	+
Frame-shit	ENST00000291442	ENST00000252597		TCGA	RV	HNSC	TCGA-D6-6516-01A	NR2F6	chr19	17351480	-	USHBP1	chr19	17362826	-
Frame-shit	ENST00000291442	ENST00000431146		TCGA	RV	HNSC	TCGA-D6-6516-01A	NR2F6	chr19	17351480	-	USHBP1	chr19	17362826	-
5CDS-intron	ENST00000291442	ENST00000598570		TCGA	RV	HNSC	TCGA-D6-6516-01A	NR2F6	chr19	17351480	-	USHBP1	chr19	17362826	-
Frame-shit	ENST00000545260	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000545260	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000545260	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000545260	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000545260	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000545693	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000545693	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000545693	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000545693	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000545693	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000350537	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000350537	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000350537	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000350537	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000350537	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000346874	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000346874	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000346874	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000346874	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000346874	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374789	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374789	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374789	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374789	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374789	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374790	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374790	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374790	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374790	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374790	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374794	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374794	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374794	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374794	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374794	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374788	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374788	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374788	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374788	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374788	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000466092	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000466092	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000466092	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000466092	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000466092	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374776	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374776	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374776	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374776	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374776	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000340077	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000340077	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000340077	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000340077	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000340077	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000544292	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000544292	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000544292	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000544292	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000544292	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374773	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374773	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000374773	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374773	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000374773	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000374768	ENST00000537576		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000374768	ENST00000305242		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000374768	ENST00000545014		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000374768	ENST00000480504		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000374768	ENST00000239715		TCGA	RV	HNSC	TCGA-CR-7377-01A	PARD3	chr10	35103804	-	ARMC4	chr10	28196706	-
5CDS-5UTR	ENST00000408982	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000408982	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000262477	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000537505	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000546142	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000341923	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-intron	ENST00000570487	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-01A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
Frame-shit	ENST00000312397	ENST00000527185		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
Frame-shit	ENST00000312397	ENST00000528682		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
Frame-shit	ENST00000312397	ENST00000524871		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
5CDS-intron	ENST00000312397	ENST00000418526		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
5CDS-intron	ENST00000312397	ENST00000279463		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
5CDS-intron	ENST00000312397	ENST00000524560		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000528573	ENST00000527185		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000528573	ENST00000528682		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000528573	ENST00000524871		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000528573	ENST00000418526		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000528573	ENST00000279463		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000528573	ENST00000524560		TCGA	RV	HNSC	TCGA-CV-7100-01A	SART1	chr11	65735292	+	CNTN5	chr11	99690275	+
In-frame	ENST00000252996	ENST00000355957		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
In-frame	ENST00000252996	ENST00000361770		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
5CDS-5UTR	ENST00000252996	ENST00000359617		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
5CDS-5UTR	ENST00000252996	ENST00000371141		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
5CDS-5UTR	ENST00000252996	ENST00000371132		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
5CDS-3UTR	ENST00000252996	ENST00000496003		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
5CDS-3UTR	ENST00000252996	ENST00000358029		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
5CDS-3UTR	ENST00000252996	ENST00000361830		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-3CDS	ENST00000609045	ENST00000355957		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-3CDS	ENST00000609045	ENST00000361770		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-5UTR	ENST00000609045	ENST00000359617		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-5UTR	ENST00000609045	ENST00000371141		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-5UTR	ENST00000609045	ENST00000371132		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-3UTR	ENST00000609045	ENST00000496003		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-3UTR	ENST00000609045	ENST00000358029		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
intron-3UTR	ENST00000609045	ENST00000361830		TCGA	RV	HNSC	TCGA-BB-7866-01A	TAF4	chr20	60572606	-	STX16	chr20	57242546	+
Frame-shit	ENST00000453386	ENST00000256906		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
5CDS-intron	ENST00000453386	ENST00000426880		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
5UTR-3CDS	ENST00000382191	ENST00000256906		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
5UTR-intron	ENST00000382191	ENST00000426880		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
intron-3CDS	ENST00000471134	ENST00000256906		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
intron-intron	ENST00000471134	ENST00000426880		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
Frame-shit	ENST00000342294	ENST00000256906		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
5CDS-intron	ENST00000342294	ENST00000426880		TCGA	RV	HNSC	TCGA-QK-A64Z-01A	TRA2B	chr3	185655613	-	HRH4	chr18	22048752	+
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	HNSC	TCGA-T2-A6WX-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000396787	ENST00000263228		TCGA	RV	HNSC	TCGA-MT-A51X-01A	UNC13B	chr9	35231216	+	UBE2R2	chr9	33886879	+
Frame-shit	ENST00000378495	ENST00000263228		TCGA	RV	HNSC	TCGA-MT-A51X-01A	UNC13B	chr9	35231216	+	UBE2R2	chr9	33886879	+
Frame-shit	ENST00000378496	ENST00000263228		TCGA	RV	HNSC	TCGA-MT-A51X-01A	UNC13B	chr9	35231216	+	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000481299	ENST00000263228		TCGA	RV	HNSC	TCGA-MT-A51X-01A	UNC13B	chr9	35231216	+	UBE2R2	chr9	33886879	+
5CDS-intron	ENST00000582520	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000582520	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000582520	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000582520	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000582520	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000582520	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000269321	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000269321	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000269321	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000269321	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000269321	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000269321	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000400721	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000400721	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000400721	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000400721	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000400721	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000400721	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000584461	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000584461	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000584461	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000584461	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000584461	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000584461	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000541078	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000541078	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000541078	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000541078	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000541078	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000541078	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000580685	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000580685	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000580685	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000580685	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000580685	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000580685	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000581876	ENST00000267101		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000581876	ENST00000450146		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000581876	ENST00000415288		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000581876	ENST00000553131		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000581876	ENST00000411731		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000581876	ENST00000549832		TCGA	RV	HNSC	TCGA-BA-5555-01A	ARHGDIA	chr17	79825598	-	ERBB3	chr12	56492035	+
Frame-shit	ENST00000375110	ENST00000338415		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
Frame-shit	ENST00000375110	ENST00000537448		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
Frame-shit	ENST00000319778	ENST00000338415		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
Frame-shit	ENST00000319778	ENST00000537448		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
Frame-shit	ENST00000263062	ENST00000338415		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
Frame-shit	ENST00000263062	ENST00000537448		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
intron-3CDS	ENST00000480402	ENST00000338415		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
intron-3CDS	ENST00000480402	ENST00000537448		TCGA	RV	HNSC	TCGA-UF-A71E-01A	EPC1	chr10	32594700	-	QPCT	chr2	37586723	+
intron-intron	ENST00000579662	ENST00000404460		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000303908		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000409158		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000403716		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000234115		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000439822		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000487980		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000438882		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000538982		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000409612		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000579662	ENST00000409279		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000404460		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000303908		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000409158		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000403716		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000234115		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000439822		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000487980		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000438882		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000538982		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000409612		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000339591	ENST00000409279		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000404460		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000303908		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000409158		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000403716		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000234115		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000439822		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000487980		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000438882		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000538982		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000409612		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000200181	ENST00000409279		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000404460		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000303908		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000409158		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000403716		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000234115		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000439822		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000487980		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000438882		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000538982		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000409612		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000450894	ENST00000409279		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000404460		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000303908		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000409158		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000403716		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000234115		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000439822		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000487980		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000438882		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000538982		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000409612		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000449880	ENST00000409279		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000404460		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000303908		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000409158		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000403716		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000234115		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000439822		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000487980		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000438882		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000538982		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000409612		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000584558	ENST00000409279		TCGA	RV	HNSC	TCGA-CV-5436-01A	ITGB4	chr17	73753898	+	PLEKHB2	chr2	131876464	+
In-frame	ENST00000336861	ENST00000308724		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000336861	ENST00000397120		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000336861	ENST00000556277		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
Frame-shit	ENST00000246635	ENST00000308724		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000246635	ENST00000397120		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000246635	ENST00000556277		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000587544	ENST00000308724		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000587544	ENST00000397120		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000587544	ENST00000556277		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000587118	ENST00000308724		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000587118	ENST00000397120		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000587118	ENST00000556277		TCGA	RV	HNSC	TCGA-CX-7086-01A	KRT13	chr17	39657233	-	AP1G2	chr14	24037279	-
Frame-shit	ENST00000353533	ENST00000356126		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
5CDS-intron	ENST00000353533	ENST00000357146		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
5CDS-5UTR	ENST00000353533	ENST00000581618		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
Frame-shit	ENST00000415385	ENST00000356126		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
5CDS-intron	ENST00000415385	ENST00000357146		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
5CDS-5UTR	ENST00000415385	ENST00000581618		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
intron-3CDS	ENST00000581941	ENST00000356126		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
intron-intron	ENST00000581941	ENST00000357146		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
intron-5UTR	ENST00000581941	ENST00000581618		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	MAP2K4	chr17	11924318	+	PSMD12	chr17	65353694	-
5CDS-intron	ENST00000377705	ENST00000465508		TCGA	RV	HNSC	TCGA-CV-7253-01A	NOL9	chr1	6614167	-	DNAJC11	chr1	6741097	-
5CDS-intron	ENST00000377705	ENST00000349363		TCGA	RV	HNSC	TCGA-CV-7253-01A	NOL9	chr1	6614167	-	DNAJC11	chr1	6741097	-
5CDS-intron	ENST00000377705	ENST00000377577		TCGA	RV	HNSC	TCGA-CV-7253-01A	NOL9	chr1	6614167	-	DNAJC11	chr1	6741097	-
5CDS-intron	ENST00000377705	ENST00000294401		TCGA	RV	HNSC	TCGA-CV-7253-01A	NOL9	chr1	6614167	-	DNAJC11	chr1	6741097	-
5CDS-5UTR	ENST00000377705	ENST00000542246		TCGA	RV	HNSC	TCGA-CV-7253-01A	NOL9	chr1	6614167	-	DNAJC11	chr1	6741097	-
5CDS-5UTR	ENST00000377705	ENST00000377573		TCGA	RV	HNSC	TCGA-CV-7253-01A	NOL9	chr1	6614167	-	DNAJC11	chr1	6741097	-
5CDS-intron	ENST00000323060	ENST00000589876		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000323060	ENST00000245925		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000323060	ENST00000536630		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000323060	ENST00000587152		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000323060	ENST00000586902		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000263275	ENST00000589876		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000263275	ENST00000245925		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000263275	ENST00000536630		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000263275	ENST00000587152		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-intron	ENST00000263275	ENST00000586902		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
intron-intron	ENST00000544371	ENST00000589876		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
intron-intron	ENST00000544371	ENST00000245925		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
intron-intron	ENST00000544371	ENST00000536630		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
intron-intron	ENST00000544371	ENST00000587152		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
intron-intron	ENST00000544371	ENST00000586902		TCGA	RV	HNSC	TCGA-CV-6441-01A	OPA3	chr19	46087881	-	EML2	chr19	46145610	-
5CDS-5UTR	ENST00000408982	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000408982	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000408982	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000262477	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000262477	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000537505	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000537505	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000546142	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000546142	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-5UTR	ENST00000341923	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5CDS-intron	ENST00000341923	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000571816		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000572430		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000262482		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000575111		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-5UTR	ENST00000570487	ENST00000576229		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
3UTR-intron	ENST00000570487	ENST00000570492		TCGA	RV	HNSC	TCGA-UF-A71A-06A	RABEP1	chr17	5235447	+	RNF167	chr17	4843782	+
5UTR-3CDS	ENST00000375114	ENST00000409299		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
5UTR-3CDS	ENST00000375114	ENST00000344022		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
5UTR-3CDS	ENST00000375114	ENST00000217398		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
5UTR-3CDS	ENST00000246194	ENST00000409299		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
5UTR-3CDS	ENST00000246194	ENST00000344022		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
5UTR-3CDS	ENST00000246194	ENST00000217398		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
intron-3CDS	ENST00000493399	ENST00000409299		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
intron-3CDS	ENST00000493399	ENST00000344022		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
intron-3CDS	ENST00000493399	ENST00000217398		TCGA	RV	HNSC	TCGA-QK-A6IJ-01A	RALY	chr20	32581937	+	PXMP4	chr20	32302542	-
In-frame	ENST00000379888	ENST00000370689		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000379888	ENST00000370685		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000379888	ENST00000394838		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000379888	ENST00000370682		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000379888	ENST00000394839		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000379888	ENST00000370688		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000379888	ENST00000470673		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000379888	ENST00000370680		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000446108	ENST00000370689		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000446108	ENST00000370685		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000446108	ENST00000394838		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000446108	ENST00000370682		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000446108	ENST00000394839		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
In-frame	ENST00000446108	ENST00000370688		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000446108	ENST00000470673		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
5CDS-3UTR	ENST00000446108	ENST00000370680		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000476706	ENST00000370689		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000476706	ENST00000370685		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000476706	ENST00000394838		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000476706	ENST00000370682		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000476706	ENST00000394839		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000476706	ENST00000370688		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000476706	ENST00000470673		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3UTR	ENST00000476706	ENST00000370680		TCGA	RV	HNSC	TCGA-MT-A67F-01A	RBM17	chr10	6148201	+	PRKACB	chr1	84644860	+
intron-3CDS	ENST00000499676	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000499676	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000499676	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000499676	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
In-frame	ENST00000489671	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
In-frame	ENST00000489671	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
In-frame	ENST00000489671	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5CDS-intron	ENST00000489671	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000486111	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000486111	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000486111	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000486111	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000477292	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000477292	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000477292	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000477292	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000495310	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000495310	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000495310	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000495310	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-3CDS	ENST00000467072	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-3CDS	ENST00000467072	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-3CDS	ENST00000467072	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-intron	ENST00000467072	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-3CDS	ENST00000317104	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-3CDS	ENST00000317104	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-3CDS	ENST00000317104	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-intron	ENST00000317104	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000310282	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000310282	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000310282	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000310282	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000479040	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000479040	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000479040	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000479040	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000397991	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000397991	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000397991	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000397991	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000464782	ENST00000347053		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000464782	ENST00000297135		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-3CDS	ENST00000464782	ENST00000393603		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
intron-intron	ENST00000464782	ENST00000475638		TCGA	RV	HNSC	TCGA-CR-5247-01A	TFDP2	chr3	141811903	-	COG5	chr7	106964966	-
5UTR-5UTR	ENST00000380909	ENST00000367922		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
5UTR-5UTR	ENST00000380909	ENST00000367921		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
5UTR-5UTR	ENST00000303434	ENST00000367922		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
5UTR-5UTR	ENST00000303434	ENST00000367921		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000395827	ENST00000367922		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000395827	ENST00000367921		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000395829	ENST00000367922		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000395829	ENST00000367921		TCGA	RV	HNSC	TCGA-CV-7422-01A	TRABD	chr22	50624405	+	DDR2	chr1	162625001	+
In-frame	ENST00000508803	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000508803	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000508803	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382892	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000382892	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382891	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000382891	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000382895	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000382895	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000482415	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-intron	ENST00000482415	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-3CDS	ENST00000382888	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
intron-intron	ENST00000382888	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000514045	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000514045	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000436793	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000436793	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000420906	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000420906	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000503128	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000503128	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000422959		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000307305		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000424760		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000415251		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000275575		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000450574		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000416283		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
In-frame	ENST00000398261	ENST00000248550		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
5CDS-intron	ENST00000398261	ENST00000454592		TCGA	RV	HNSC	TCGA-HD-8224-01A	WHSC1	chr4	1902978	+	PHTF2	chr7	77522925	+
Frame-shit	ENST00000375458	ENST00000303735		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000375458	ENST00000409149		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000375458	ENST00000409058		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000375458	ENST00000409662		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000375458	ENST00000493887		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000342193	ENST00000303735		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000342193	ENST00000409149		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000342193	ENST00000409058		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000342193	ENST00000409662		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000342193	ENST00000493887		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000409184	ENST00000303735		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000409184	ENST00000409149		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000409184	ENST00000409058		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000409184	ENST00000409662		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000409184	ENST00000493887		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000392717	ENST00000303735		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000392717	ENST00000409149		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000392717	ENST00000409058		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000392717	ENST00000409662		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000392717	ENST00000493887		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000194871	ENST00000303735		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000194871	ENST00000409149		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000194871	ENST00000409058		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
Frame-shit	ENST00000194871	ENST00000409662		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5CDS-intron	ENST00000194871	ENST00000493887		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5UTR-3CDS	ENST00000491126	ENST00000303735		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5UTR-3CDS	ENST00000491126	ENST00000409149		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5UTR-3CDS	ENST00000491126	ENST00000409058		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5UTR-3CDS	ENST00000491126	ENST00000409662		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
5UTR-intron	ENST00000491126	ENST00000493887		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165796066	-
In-frame	ENST00000262367	ENST00000355178		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000262367	ENST00000282185		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000262367	ENST00000458350		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000262367	ENST00000513443		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000262367	ENST00000513634		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
5CDS-intron	ENST00000262367	ENST00000514253		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000382070	ENST00000355178		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000382070	ENST00000282185		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000382070	ENST00000458350		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000382070	ENST00000513443		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
In-frame	ENST00000382070	ENST00000513634		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
5CDS-intron	ENST00000382070	ENST00000514253		TCGA	RV	HNSC	TCGA-CR-7374-01A	CREBBP	chr16	3900298	-	ATG10	chr5	81354314	+
intron-3CDS	ENST00000202028	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-intron	ENST00000202028	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
5UTR-3CDS	ENST00000373950	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
5UTR-intron	ENST00000373950	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-3CDS	ENST00000441639	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-intron	ENST00000441639	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-3CDS	ENST00000373946	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-intron	ENST00000373946	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-3CDS	ENST00000338074	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-intron	ENST00000338074	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-3CDS	ENST00000373941	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-intron	ENST00000373941	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-3CDS	ENST00000479336	ENST00000381458		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
intron-intron	ENST00000479336	ENST00000463090		TCGA	RV	HNSC	TCGA-CN-4733-01A	EPB41L1	chr20	34680735	+	TGM3	chr20	2290303	+
Frame-shit	ENST00000222224	ENST00000394140		TCGA	RV	HNSC	TCGA-QK-A652-01A	LENG1	chr19	54662020	-	NIT2	chr3	100059917	+
Frame-shit	ENST00000533902	ENST00000255684		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
Frame-shit	ENST00000533902	ENST00000394618		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
Frame-shit	ENST00000533902	ENST00000340246		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
Frame-shit	ENST00000533902	ENST00000425950		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
Frame-shit	ENST00000533902	ENST00000415491		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000280258	ENST00000255684		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000280258	ENST00000394618		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000280258	ENST00000340246		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000280258	ENST00000425950		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000280258	ENST00000415491		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000441050	ENST00000255684		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000441050	ENST00000394618		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000441050	ENST00000340246		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000441050	ENST00000425950		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000441050	ENST00000415491		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000531521	ENST00000255684		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000531521	ENST00000394618		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000531521	ENST00000340246		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000531521	ENST00000425950		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
intron-3CDS	ENST00000531521	ENST00000415491		TCGA	RV	HNSC	TCGA-P3-A6T5-01A	PRSS23	chr11	86534635	+	LGALS12	chr11	63277935	+
Frame-shit	ENST00000346348	ENST00000355238		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
In-frame	ENST00000346348	ENST00000369622		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
Frame-shit	ENST00000314673	ENST00000355238		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
In-frame	ENST00000314673	ENST00000369622		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
Frame-shit	ENST00000513865	ENST00000355238		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
In-frame	ENST00000513865	ENST00000369622		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
intron-3CDS	ENST00000505648	ENST00000355238		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
intron-3CDS	ENST00000505648	ENST00000369622		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
intron-3CDS	ENST00000508980	ENST00000355238		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
intron-3CDS	ENST00000508980	ENST00000369622		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
Frame-shit	ENST00000369627	ENST00000355238		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
In-frame	ENST00000369627	ENST00000369622		TCGA	RV	HNSC	TCGA-CV-6962-01A	SNX14	chr6	86303297	-	SYNCRIP	chr6	86325065	-
5UTR-3CDS	ENST00000487143	ENST00000409261		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
5UTR-3CDS	ENST00000487143	ENST00000409213		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
5UTR-3CDS	ENST00000487143	ENST00000405974		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
5UTR-3CDS	ENST00000487143	ENST00000317721		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
5UTR-5UTR	ENST00000487143	ENST00000473859		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000355999	ENST00000409261		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000355999	ENST00000409213		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000355999	ENST00000405974		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
In-frame	ENST00000355999	ENST00000317721		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
5CDS-5UTR	ENST00000355999	ENST00000473859		TCGA	RV	HNSC	TCGA-CN-A49A-01A	STK39	chr2	168869144	-	NCKAP5	chr2	133489624	-
5CDS-intron	ENST00000382456	ENST00000264818		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000382456	ENST00000524462		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000382456	ENST00000525621		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000382456	ENST00000529370		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000382456	ENST00000529422		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000411763	ENST00000264818		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000411763	ENST00000524462		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000411763	ENST00000525621		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000411763	ENST00000529370		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000411763	ENST00000529422		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292807	ENST00000264818		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292807	ENST00000524462		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292807	ENST00000525621		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292807	ENST00000529370		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292807	ENST00000529422		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000439647	ENST00000264818		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000439647	ENST00000524462		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000439647	ENST00000525621		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000439647	ENST00000529370		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000439647	ENST00000529422		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000461733	ENST00000264818		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000461733	ENST00000524462		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000461733	ENST00000525621		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000461733	ENST00000529370		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
intron-intron	ENST00000461733	ENST00000529422		TCGA	RV	HNSC	TCGA-CR-7374-01A	AP2M1	chr3	183901878	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000360184	ENST00000267101		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000360184	ENST00000450146		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000360184	ENST00000415288		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000360184	ENST00000553131		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000360184	ENST00000411731		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000360184	ENST00000549832		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000556791	ENST00000267101		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000556791	ENST00000450146		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000556791	ENST00000415288		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000556791	ENST00000553131		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000556791	ENST00000411731		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000556791	ENST00000549832		TCGA	RV	HNSC	TCGA-UF-A718-01A	DYNC1H1	chr14	102517128	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000299767	ENST00000367545		TCGA	RV	HNSC	TCGA-BB-7871-01A	HSP90B1	chr12	104341704	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000299767	ENST00000367526		TCGA	RV	HNSC	TCGA-BB-7871-01A	HSP90B1	chr12	104341704	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000299767	ENST00000480333		TCGA	RV	HNSC	TCGA-BB-7871-01A	HSP90B1	chr12	104341704	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000360565	ENST00000596435		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
5CDS-intron	ENST00000360565	ENST00000344019		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
5CDS-intron	ENST00000360565	ENST00000597551		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
5CDS-intron	ENST00000360565	ENST00000204637		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
5CDS-intron	ENST00000360565	ENST00000600429		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
5CDS-intron	ENST00000360565	ENST00000594009		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
5CDS-intron	ENST00000360565	ENST00000595510		TCGA	RV	HNSC	TCGA-CN-4731-01A	SCAF1	chr19	50156962	+	FLT3LG	chr19	49982166	+
In-frame	ENST00000551577	ENST00000354981		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
In-frame	ENST00000551577	ENST00000378003		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
In-frame	ENST00000551577	ENST00000355755		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
5CDS-intron	ENST00000551577	ENST00000408042		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
In-frame	ENST00000266534	ENST00000354981		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
In-frame	ENST00000266534	ENST00000378003		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
In-frame	ENST00000266534	ENST00000355755		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
5CDS-intron	ENST00000266534	ENST00000408042		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000536799	ENST00000354981		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000536799	ENST00000378003		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000536799	ENST00000355755		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-intron	ENST00000536799	ENST00000408042		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000546978	ENST00000354981		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000546978	ENST00000378003		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000546978	ENST00000355755		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
intron-intron	ENST00000546978	ENST00000408042		TCGA	RV	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44537427	+	KIF16B	chr20	16293063	-
Frame-shit	ENST00000381669	ENST00000332509		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
Frame-shit	ENST00000381669	ENST00000335539		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
Frame-shit	ENST00000381669	ENST00000402064		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000381669	ENST00000490473		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000381669	ENST00000436218		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000381669	ENST00000447598		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000381669	ENST00000435484		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000381669	ENST00000417303		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
Frame-shit	ENST00000332536	ENST00000332509		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
Frame-shit	ENST00000332536	ENST00000335539		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
Frame-shit	ENST00000332536	ENST00000402064		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000332536	ENST00000490473		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000332536	ENST00000436218		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000332536	ENST00000447598		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000332536	ENST00000435484		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
5CDS-intron	ENST00000332536	ENST00000417303		TCGA	RV	HNSC	TCGA-CN-4740-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38516916	-
Frame-shit	ENST00000439174	ENST00000376663		TCGA	RV	HNSC	TCGA-CV-7429-01A	GNA13	chr17	63049620	-	BMI1	chr10	22617063	+
In-frame	ENST00000541118	ENST00000376663		TCGA	RV	HNSC	TCGA-CV-7429-01A	GNA13	chr17	63049620	-	BMI1	chr10	22617063	+
5UTR-3CDS	ENST00000503427	ENST00000533820		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000503427	ENST00000533129		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000503427	ENST00000524773		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000503427	ENST00000279247		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000503427	ENST00000527469		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000503427	ENST00000527323		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000502717	ENST00000533820		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000502717	ENST00000533129		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000502717	ENST00000524773		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000502717	ENST00000279247		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000502717	ENST00000527469		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000502717	ENST00000527323		TCGA	RV	HNSC	TCGA-CN-5355-01A	HMGXB3	chr5	149380742	+	CAPN1	chr11	64972154	+
5CDS-intron	ENST00000330722	ENST00000367669		TCGA	RV	HNSC	TCGA-CV-A461-01A	KRT6A	chr12	52880958	-	RFWD2	chr1	176129420	-
5CDS-intron	ENST00000330722	ENST00000308769		TCGA	RV	HNSC	TCGA-CV-A461-01A	KRT6A	chr12	52880958	-	RFWD2	chr1	176129420	-
intron-3CDS	ENST00000545844	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000545844	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000545844	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000567887	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000567887	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000567887	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000372915	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000372915	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000372915	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000361689	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000361689	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000361689	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000539005	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000539005	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000539005	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000317713	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000317713	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000317713	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000564288	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000564288	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000564288	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000289893	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000289893	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000289893	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000536367	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000536367	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000536367	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000484793	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000484793	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000484793	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000602421	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000602421	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000602421	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000476350	ENST00000432648		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-3CDS	ENST00000476350	ENST00000446189		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
intron-intron	ENST00000476350	ENST00000372984		TCGA	RV	HNSC	TCGA-CV-7235-01A	MACF1	chr1	39571389	+	AKIRIN1	chr1	39463843	+
5UTR-3CDS	ENST00000199940	ENST00000392237		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
5UTR-3CDS	ENST00000199940	ENST00000358299		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
5UTR-intron	ENST00000199940	ENST00000425178		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
5UTR-intron	ENST00000199940	ENST00000418208		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000360351	ENST00000392237		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000360351	ENST00000358299		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000360351	ENST00000425178		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000360351	ENST00000418208		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000361559	ENST00000392237		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000361559	ENST00000358299		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000361559	ENST00000425178		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000361559	ENST00000418208		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000392194	ENST00000392237		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000392194	ENST00000358299		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000392194	ENST00000425178		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000392194	ENST00000418208		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000447185	ENST00000392237		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000447185	ENST00000358299		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000447185	ENST00000425178		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000447185	ENST00000418208		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000475600	ENST00000392237		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-3CDS	ENST00000475600	ENST00000358299		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000475600	ENST00000425178		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
intron-intron	ENST00000475600	ENST00000418208		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	MAP2	chr2	210289000	+	ICA1L	chr2	203680732	-
5CDS-intron	ENST00000550697	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000550697	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000548580	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000548580	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000293422	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000293422	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000348108	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000348108	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000549017	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000549017	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000549566	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000549566	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000536128	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000536128	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000547649	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000547649	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000547408	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000547408	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000551589	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000551589	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000548400	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000548400	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000548293	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000548293	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000551954	ENST00000216297		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000551954	ENST00000555943		TCGA	RV	HNSC	TCGA-D6-A6EN-01A	MYL6	chr12	56555358	+	SUPT16H	chr14	21829491	-
5CDS-5UTR	ENST00000356770	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000356770	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000356770	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000356770	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000356770	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000356770	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000394830	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000394830	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000394830	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000394830	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000394830	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000394830	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000296302	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000296302	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000296302	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000296302	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000296302	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000296302	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000337303	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000337303	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000337303	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000337303	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000337303	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000337303	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000410007	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000410007	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000410007	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000410007	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000410007	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000410007	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409057	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409057	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409057	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409057	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409057	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000409057	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409114	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409114	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409114	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409114	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409114	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000409114	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409767	ENST00000478968		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409767	ENST00000394783		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409767	ENST00000407584		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409767	ENST00000266014		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-5UTR	ENST00000409767	ENST00000491606		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
5CDS-intron	ENST00000409767	ENST00000463827		TCGA	RV	HNSC	TCGA-QK-A6VC-01A	PBRM1	chr3	52712516	-	GLT8D1	chr3	52734512	-
Frame-shit	ENST00000335312	ENST00000395045		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000335312	ENST00000590821		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000335312	ENST00000395040		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000335312	ENST00000310132		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000335312	ENST00000585778		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
Frame-shit	ENST00000539785	ENST00000395045		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000539785	ENST00000590821		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000539785	ENST00000395040		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000539785	ENST00000310132		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000539785	ENST00000585778		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
Frame-shit	ENST00000589578	ENST00000395045		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000589578	ENST00000590821		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000589578	ENST00000395040		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000589578	ENST00000310132		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000589578	ENST00000585778		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
Frame-shit	ENST00000537021	ENST00000395045		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000537021	ENST00000590821		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000537021	ENST00000395040		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000537021	ENST00000310132		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000537021	ENST00000585778		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5UTR-3CDS	ENST00000587482	ENST00000395045		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5UTR-intron	ENST00000587482	ENST00000590821		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5UTR-intron	ENST00000587482	ENST00000395040		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5UTR-intron	ENST00000587482	ENST00000310132		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5UTR-intron	ENST00000587482	ENST00000585778		TCGA	RV	HNSC	TCGA-CN-4741-01A	PIP5K1C	chr19	3700295	-	MATK	chr19	3781670	-
5CDS-intron	ENST00000265340	ENST00000471826		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000265340	ENST00000401867		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000265340	ENST00000379086		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000265340	ENST00000166534		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000265340	ENST00000360568		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000265340	ENST00000379104		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000265340	ENST00000379100		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-intron	ENST00000506438	ENST00000471826		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000506438	ENST00000401867		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000506438	ENST00000379086		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000506438	ENST00000166534		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000506438	ENST00000360568		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000506438	ENST00000379104		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
5CDS-5UTR	ENST00000506438	ENST00000379100		TCGA	RV	HNSC	TCGA-DQ-7590-01A	PITX1	chr5	134369403	-	P4HA2	chr5	131554337	-
In-frame	ENST00000267163	ENST00000371951		TCGA	RV	HNSC	TCGA-D6-6827-01A	RB1	chr13	48881542	+	HTR2C	chrX	114141152	+
In-frame	ENST00000267163	ENST00000276198		TCGA	RV	HNSC	TCGA-D6-6827-01A	RB1	chr13	48881542	+	HTR2C	chrX	114141152	+
Frame-shit	ENST00000267163	ENST00000371950		TCGA	RV	HNSC	TCGA-D6-6827-01A	RB1	chr13	48881542	+	HTR2C	chrX	114141152	+
intron-3CDS	ENST00000484879	ENST00000371951		TCGA	RV	HNSC	TCGA-D6-6827-01A	RB1	chr13	48881542	+	HTR2C	chrX	114141152	+
intron-3CDS	ENST00000484879	ENST00000276198		TCGA	RV	HNSC	TCGA-D6-6827-01A	RB1	chr13	48881542	+	HTR2C	chrX	114141152	+
intron-3CDS	ENST00000484879	ENST00000371950		TCGA	RV	HNSC	TCGA-D6-6827-01A	RB1	chr13	48881542	+	HTR2C	chrX	114141152	+
In-frame	ENST00000262544	ENST00000336755		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000262544	ENST00000534928		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-3UTR	ENST00000262544	ENST00000461038		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-intron	ENST00000262544	ENST00000322831		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000336714	ENST00000336755		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000336714	ENST00000534928		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-3UTR	ENST00000336714	ENST00000461038		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-intron	ENST00000336714	ENST00000322831		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000377475	ENST00000336755		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000377475	ENST00000534928		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-3UTR	ENST00000377475	ENST00000461038		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-intron	ENST00000377475	ENST00000322831		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000377465	ENST00000336755		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
In-frame	ENST00000377465	ENST00000534928		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-3UTR	ENST00000377465	ENST00000461038		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5CDS-intron	ENST00000377465	ENST00000322831		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
intron-3CDS	ENST00000494645	ENST00000336755		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
intron-3CDS	ENST00000494645	ENST00000534928		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
intron-3UTR	ENST00000494645	ENST00000461038		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
intron-intron	ENST00000494645	ENST00000322831		TCGA	RV	HNSC	TCGA-CV-A45T-01A	SEC23B	chr20	18506576	+	ZCCHC7	chr9	37349354	+
5UTR-3CDS	ENST00000437152	ENST00000280187		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000437152	ENST00000393658		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000437152	ENST00000506894		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000437152	ENST00000515090		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-intron	ENST00000437152	ENST00000506219		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000245908	ENST00000280187		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000245908	ENST00000393658		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000245908	ENST00000506894		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-3CDS	ENST00000245908	ENST00000515090		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
5UTR-intron	ENST00000245908	ENST00000506219		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
intron-3CDS	ENST00000599563	ENST00000280187		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
intron-3CDS	ENST00000599563	ENST00000393658		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
intron-3CDS	ENST00000599563	ENST00000506894		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
intron-3CDS	ENST00000599563	ENST00000515090		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
intron-intron	ENST00000599563	ENST00000506219		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	SH2D3A	chr19	6767398	-	GPM6A	chr4	176573138	-
Frame-shit	ENST00000342704	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
Frame-shit	ENST00000342704	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
Frame-shit	ENST00000342704	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
Frame-shit	ENST00000342704	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5CDS-3UTR	ENST00000342704	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5UTR-3CDS	ENST00000375279	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5UTR-3CDS	ENST00000375279	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5UTR-3CDS	ENST00000375279	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5UTR-3CDS	ENST00000375279	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5UTR-3UTR	ENST00000375279	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000344201	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000344201	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000344201	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000344201	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000344201	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397798	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397798	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397798	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397798	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000397798	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000346541	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000346541	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000346541	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000346541	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000346541	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397800	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397800	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397800	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000397800	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000397800	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000492345	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000492345	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000492345	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000492345	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000492345	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000359606	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000359606	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000359606	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000359606	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000359606	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000491618	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000491618	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000491618	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000491618	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000491618	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000543126	ENST00000398174		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000543126	ENST00000340852		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000543126	ENST00000335574		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3CDS	ENST00000543126	ENST00000376127		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
intron-3UTR	ENST00000543126	ENST00000492709		TCGA	RV	HNSC	TCGA-CN-6024-01A	CBFA2T2	chr20	32078107	+	HM13	chr20	30132750	+
5CDS-intron	ENST00000053867	ENST00000370096		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
5CDS-intron	ENST00000053867	ENST00000353414		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
5CDS-intron	ENST00000053867	ENST00000358392		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
5CDS-intron	ENST00000053867	ENST00000512756		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
5CDS-intron	ENST00000053867	ENST00000461720		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589265	ENST00000370096		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589265	ENST00000353414		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589265	ENST00000358392		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589265	ENST00000512756		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589265	ENST00000461720		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589923	ENST00000370096		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589923	ENST00000353414		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589923	ENST00000358392		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589923	ENST00000512756		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
intron-intron	ENST00000589923	ENST00000461720		TCGA	RV	HNSC	TCGA-CQ-A4CI-01A	GRN	chr17	42430470	+	COL11A1	chr1	103491508	-
In-frame	ENST00000558518	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558518	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558518	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558518	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558518	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558518	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000558518	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000557933	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000455727	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000455727	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000455727	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000455727	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000455727	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000455727	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000455727	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000535915	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000535915	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000535915	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000535915	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000535915	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000535915	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000535915	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000545707	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000545707	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000545707	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000545707	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000545707	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000545707	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000545707	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558013	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558013	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558013	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558013	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558013	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000558013	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000558013	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000585892		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000314646		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000359692		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000389253		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000355667		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000408974		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
intron-intron	ENST00000560628	ENST00000591819		TCGA	RV	HNSC	TCGA-CN-5367-01A	LDLR	chr19	11240346	+	DNM2	chr19	10935733	+
In-frame	ENST00000399799	ENST00000442544		TCGA	RV	HNSC	TCGA-CV-5434-01A	ROCK1	chr18	18586312	-	DCC	chr18	50912413	+
In-frame	ENST00000399799	ENST00000412726		TCGA	RV	HNSC	TCGA-CV-5434-01A	ROCK1	chr18	18586312	-	DCC	chr18	50912413	+
In-frame	ENST00000399799	ENST00000581580		TCGA	RV	HNSC	TCGA-CV-5434-01A	ROCK1	chr18	18586312	-	DCC	chr18	50912413	+
5CDS-intron	ENST00000399799	ENST00000580146		TCGA	RV	HNSC	TCGA-CV-5434-01A	ROCK1	chr18	18586312	-	DCC	chr18	50912413	+
Frame-shit	ENST00000361337	ENST00000570565		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TOP1	chr20	39658095	+	CA10	chr17	49825178	-
Frame-shit	ENST00000361337	ENST00000442502		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TOP1	chr20	39658095	+	CA10	chr17	49825178	-
Frame-shit	ENST00000361337	ENST00000340813		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TOP1	chr20	39658095	+	CA10	chr17	49825178	-
Frame-shit	ENST00000361337	ENST00000451037		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TOP1	chr20	39658095	+	CA10	chr17	49825178	-
Frame-shit	ENST00000361337	ENST00000285273		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TOP1	chr20	39658095	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000361337	ENST00000571918		TCGA	RV	HNSC	TCGA-MZ-A7D7-01A	TOP1	chr20	39658095	+	CA10	chr17	49825178	-
Frame-shit	ENST00000348165	ENST00000389413		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000348165	ENST00000409483		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000348165	ENST00000389416		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000348165	ENST00000389418		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000348165	ENST00000404321		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000389103	ENST00000389413		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000389103	ENST00000409483		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000389103	ENST00000389416		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000389103	ENST00000389418		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
Frame-shit	ENST00000389103	ENST00000404321		TCGA	RV	HNSC	TCGA-CR-7389-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157997965	-
In-frame	ENST00000373275	ENST00000375915		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	BRWD3	chrX	80047353	-	FAM155A	chr13	107823134	-
intron-3CDS	ENST00000473691	ENST00000375915		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	BRWD3	chrX	80047353	-	FAM155A	chr13	107823134	-
3UTR-3CDS	ENST00000508198	ENST00000393381		TCGA	RV	HNSC	TCGA-D6-A6EO-01A	FAM160A1	chr4	152330617	+	C4orf27	chr4	170674986	-
5UTR-3CDS	ENST00000435205	ENST00000393381		TCGA	RV	HNSC	TCGA-D6-A6EO-01A	FAM160A1	chr4	152330617	+	C4orf27	chr4	170674986	-
intron-3CDS	ENST00000505231	ENST00000393381		TCGA	RV	HNSC	TCGA-D6-A6EO-01A	FAM160A1	chr4	152330617	+	C4orf27	chr4	170674986	-
Frame-shit	ENST00000366862	ENST00000375318		TCGA	RV	HNSC	TCGA-CV-7406-01A	FBXO28	chr1	224302098	+	LYZL2	chr10	30901829	-
Frame-shit	ENST00000424254	ENST00000375318		TCGA	RV	HNSC	TCGA-CV-7406-01A	FBXO28	chr1	224302098	+	LYZL2	chr10	30901829	-
5CDS-intron	ENST00000380406	ENST00000309364		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000359180		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000317589		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000355397		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000429027		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000539256		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000299275		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000538714		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000543806		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000424268		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000540972		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380406	ENST00000510738		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000309364		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000359180		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000317589		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000355397		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000429027		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000539256		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000299275		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000538714		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000543806		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000424268		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000540972		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000380405	ENST00000510738		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000309364		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000359180		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000317589		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000355397		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000429027		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000539256		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000299275		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000538714		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000543806		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000424268		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000540972		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000320027	ENST00000510738		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000309364		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000359180		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000317589		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000355397		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000429027		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000539256		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000299275		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000538714		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000543806		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000424268		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000540972		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000445273	ENST00000510738		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000309364		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000359180		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000317589		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000355397		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000429027		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000539256		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000299275		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000538714		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000543806		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000424268		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000540972		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000429785	ENST00000510738		TCGA	RV	HNSC	TCGA-CR-6474-01A	HSPH1	chr13	31710765	-	PLEKHA5	chr12	19441012	+
intron-5UTR	ENST00000484501	ENST00000288986		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
intron-5UTR	ENST00000484501	ENST00000481752		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
intron-intron	ENST00000484501	ENST00000469404		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000329582	ENST00000288986		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000329582	ENST00000481752		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
5CDS-intron	ENST00000329582	ENST00000469404		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
3UTR-5UTR	ENST00000309741	ENST00000288986		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
3UTR-5UTR	ENST00000309741	ENST00000481752		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
3UTR-intron	ENST00000309741	ENST00000469404		TCGA	RV	HNSC	TCGA-CX-7086-01A	IL20RB	chr3	136714398	+	NCK1	chr3	136646826	+
In-frame	ENST00000397661	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000397661	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000397661	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000397661	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000397661	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000397661	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000397661	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000592199	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000592199	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000592199	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000592199	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000592199	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000592199	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000592199	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587760	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587760	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587760	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587760	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587760	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000587760	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000587760	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000585575	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000585575	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000585575	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000585575	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000585575	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000585575	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000585575	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000360105	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000360105	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000360105	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000360105	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000360105	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000360105	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000360105	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000588228	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000588228	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000588228	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000588228	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000588228	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000588228	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000588228	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587260	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587260	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587260	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587260	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000587260	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000587260	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000587260	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000358552	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000358552	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000358552	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000358552	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
In-frame	ENST00000358552	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000358552	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000358552	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000588680	ENST00000424082		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000588680	ENST00000259351		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000588680	ENST00000394022		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000588680	ENST00000373436		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000588680	ENST00000373434		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-intron	ENST00000588680	ENST00000394011		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-intron	ENST00000588680	ENST00000480993		TCGA	RV	HNSC	TCGA-CV-7428-01A	NFIX	chr19	13136366	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000542515	ENST00000227507		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
intron-intron	ENST00000542515	ENST00000536559		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
In-frame	ENST00000279147	ENST00000227507		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
5CDS-intron	ENST00000279147	ENST00000536559		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
In-frame	ENST00000536870	ENST00000227507		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
5CDS-intron	ENST00000536870	ENST00000536559		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
In-frame	ENST00000535657	ENST00000227507		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
5CDS-intron	ENST00000535657	ENST00000536559		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
In-frame	ENST00000539414	ENST00000227507		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
5CDS-intron	ENST00000539414	ENST00000536559		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
In-frame	ENST00000542341	ENST00000227507		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
5CDS-intron	ENST00000542341	ENST00000536559		TCGA	RV	HNSC	TCGA-DQ-7589-01A	ORAOV1	chr11	69489958	-	CCND1	chr11	69457799	+
intron-intron	ENST00000368708	ENST00000518164		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000521291		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000396070		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000287038		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368708	ENST00000523172		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000518164		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000521291		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000396070		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000287038		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000487430	ENST00000523172		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000518164		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000521291		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000396070		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000287038		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000497140	ENST00000523172		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000518164		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000521291		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000396070		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000287038		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368710	ENST00000523172		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000518164		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000521291		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000396070		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000287038		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-intron	ENST00000368709	ENST00000523172		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000518164		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000521291		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000396070		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000287038		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
intron-intron	ENST00000368707	ENST00000523172		TCGA	RV	HNSC	TCGA-CN-5369-01A	S100A2	chr1	153533816	-	RPL30	chr8	99058697	-
5CDS-5UTR	ENST00000336665	ENST00000272930		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000336665	ENST00000409633		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000336665	ENST00000414443		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-intron	ENST00000336665	ENST00000409953		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000336665	ENST00000409332		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000304032	ENST00000272930		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000304032	ENST00000409633		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000304032	ENST00000414443		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-intron	ENST00000304032	ENST00000409953		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000304032	ENST00000409332		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000409538	ENST00000272930		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000409538	ENST00000409633		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000409538	ENST00000414443		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-intron	ENST00000409538	ENST00000409953		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000409538	ENST00000409332		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000428334	ENST00000272930		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000428334	ENST00000409633		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000428334	ENST00000414443		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-intron	ENST00000428334	ENST00000409953		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
intron-5UTR	ENST00000428334	ENST00000409332		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000409457	ENST00000272930		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000409457	ENST00000409633		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000409457	ENST00000414443		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-intron	ENST00000409457	ENST00000409953		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-5UTR	ENST00000409457	ENST00000409332		TCGA	RV	HNSC	TCGA-CR-6484-01A	AGAP1	chr2	236403493	+	UBE2F	chr2	238881734	+
5CDS-intron	ENST00000283558	ENST00000458711		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000283558	ENST00000424185		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000283558	ENST00000397191		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000283558	ENST00000470164		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000283558	ENST00000309957		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000375630	ENST00000458711		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000375630	ENST00000424185		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000375630	ENST00000397191		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000375630	ENST00000470164		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000375630	ENST00000309957		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000487903	ENST00000458711		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000487903	ENST00000424185		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000487903	ENST00000397191		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000487903	ENST00000470164		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000487903	ENST00000309957		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000375645	ENST00000458711		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000375645	ENST00000424185		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-intron	ENST00000375645	ENST00000397191		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000375645	ENST00000470164		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
5CDS-3UTR	ENST00000375645	ENST00000309957		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
intron-intron	ENST00000419448	ENST00000458711		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
intron-intron	ENST00000419448	ENST00000424185		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
intron-intron	ENST00000419448	ENST00000397191		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000419448	ENST00000470164		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
intron-3UTR	ENST00000419448	ENST00000309957		TCGA	RV	HNSC	TCGA-QK-A8ZA-01A	ATP11A	chr13	113344769	+	CARKD	chr13	111274563	+
In-frame	ENST00000377809	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000402010	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000413835	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000377810	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000315032	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000508192	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000361128	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000350490	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000502399	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000509502	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000513765	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000408948	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
In-frame	ENST00000425897	ENST00000294244		TCGA	RV	HNSC	TCGA-BA-A4II-01A	MARK2	chr11	63668150	+	C11orf84	chr11	63594400	+
5UTR-3CDS	ENST00000262510	ENST00000512062		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-3CDS	ENST00000262510	ENST00000307892		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-intron	ENST00000262510	ENST00000515314		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-intron	ENST00000262510	ENST00000561792		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-3CDS	ENST00000436936	ENST00000512062		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-3CDS	ENST00000436936	ENST00000307892		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-intron	ENST00000436936	ENST00000515314		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-intron	ENST00000436936	ENST00000561792		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-3CDS	ENST00000308149	ENST00000512062		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-3CDS	ENST00000308149	ENST00000307892		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-intron	ENST00000308149	ENST00000515314		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
5UTR-intron	ENST00000308149	ENST00000561792		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-3CDS	ENST00000543141	ENST00000512062		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-3CDS	ENST00000543141	ENST00000307892		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-intron	ENST00000543141	ENST00000515314		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-intron	ENST00000543141	ENST00000561792		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-3CDS	ENST00000539144	ENST00000512062		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-3CDS	ENST00000539144	ENST00000307892		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-intron	ENST00000539144	ENST00000515314		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-intron	ENST00000539144	ENST00000561792		TCGA	RV	HNSC	TCGA-D6-8568-01A	NLRC5	chr16	57051100	+	CYB5B	chr16	69492996	+
intron-intron	ENST00000341744	ENST00000371917		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000341744	ENST00000493140		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000395816	ENST00000371917		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000395816	ENST00000493140		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000347215	ENST00000371917		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000347215	ENST00000493140		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000265626	ENST00000371917		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000265626	ENST00000493140		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000395814	ENST00000371917		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000395814	ENST00000493140		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000472841	ENST00000371917		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000472841	ENST00000493140		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	PMEPA1	chr20	56223454	-	ARFGEF2	chr20	47615777	+
intron-3CDS	ENST00000419071	ENST00000219207		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
intron-3CDS	ENST00000419071	ENST00000569059		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
Frame-shit	ENST00000268835	ENST00000219207		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
Frame-shit	ENST00000268835	ENST00000569059		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
intron-3CDS	ENST00000536323	ENST00000219207		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
intron-3CDS	ENST00000536323	ENST00000569059		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
Frame-shit	ENST00000542013	ENST00000219207		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
Frame-shit	ENST00000542013	ENST00000569059		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
intron-3CDS	ENST00000575337	ENST00000219207		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
intron-3CDS	ENST00000575337	ENST00000569059		TCGA	RV	HNSC	TCGA-BA-A8YP-01A	PRPSAP2	chr17	18770647	+	PLLP	chr16	57292496	-
intron-3CDS	ENST00000358794	ENST00000396981		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000358794	ENST00000572484		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
In-frame	ENST00000305218	ENST00000396981		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000305218	ENST00000572484		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
In-frame	ENST00000538945	ENST00000396981		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000538945	ENST00000572484		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
In-frame	ENST00000543847	ENST00000396981		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000543847	ENST00000572484		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000540501	ENST00000396981		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000540501	ENST00000572484		TCGA	RV	HNSC	TCGA-D6-A74Q-01A	STIP1	chr11	63953742	+	UBE2G1	chr17	4210418	-
Frame-shit	ENST00000539652	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5CDS-3UTR	ENST00000539652	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
Frame-shit	ENST00000556010	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5CDS-3UTR	ENST00000556010	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
Frame-shit	ENST00000358230	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5CDS-3UTR	ENST00000358230	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
intron-3CDS	ENST00000544599	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
intron-3UTR	ENST00000544599	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
Frame-shit	ENST00000286424	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5CDS-3UTR	ENST00000286424	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
Frame-shit	ENST00000398033	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5CDS-3UTR	ENST00000398033	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
Frame-shit	ENST00000542724	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5CDS-3UTR	ENST00000542724	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5UTR-3CDS	ENST00000535812	ENST00000186436		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
5UTR-3UTR	ENST00000535812	ENST00000425805		TCGA	RV	HNSC	TCGA-CR-6478-01A	TMBIM4	chr12	66563635	-	TMEM131	chr2	98430851	-
Frame-shit	ENST00000310301	ENST00000221561		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
Frame-shit	ENST00000310301	ENST00000327141		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5CDS-intron	ENST00000310301	ENST00000592330		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5CDS-intron	ENST00000310301	ENST00000586839		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
Frame-shit	ENST00000395969	ENST00000221561		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
Frame-shit	ENST00000395969	ENST00000327141		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5CDS-intron	ENST00000395969	ENST00000592330		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5CDS-intron	ENST00000395969	ENST00000586839		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5UTR-3CDS	ENST00000466017	ENST00000221561		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5UTR-3CDS	ENST00000466017	ENST00000327141		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5UTR-intron	ENST00000466017	ENST00000592330		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
5UTR-intron	ENST00000466017	ENST00000586839		TCGA	RV	HNSC	TCGA-CV-7421-01A	VPS41	chr7	38829401	-	AES	chr19	3054192	-
Frame-shit	ENST00000313949	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000313949	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000313949	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000313949	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371098	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371098	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371098	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-intron	ENST00000371098	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000371075	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000371075	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000371075	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000371075	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371100	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371100	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371100	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000371100	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371099	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371099	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371099	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-intron	ENST00000371099	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371102	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371102	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371102	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000371102	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000464624	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000464624	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
Frame-shit	ENST00000464624	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000464624	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000306120	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000306120	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000306120	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-intron	ENST00000306120	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371095	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371095	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371095	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000371095	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371085	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371085	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000371085	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000371085	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000354359	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000354359	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000354359	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000354359	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000265620	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000265620	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000265620	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000265620	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000306090	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000306090	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000306090	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
5CDS-intron	ENST00000306090	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371081	ENST00000261023		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371081	ENST00000374907		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-3CDS	ENST00000371081	ENST00000433736		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
intron-intron	ENST00000371081	ENST00000474571		TCGA	RV	HNSC	TCGA-CV-5978-01A	GNAS	chr20	57486241	+	ITGAV	chr2	187540547	+
In-frame	ENST00000373625	ENST00000294413		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
In-frame	ENST00000373625	ENST00000374352		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000413854		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000243186		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000455194		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000425135		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000340849		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000349320		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000346452		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000349438		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
5CDS-intron	ENST00000373625	ENST00000495048		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000537234	ENST00000294413		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000537234	ENST00000374352		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000413854		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000243186		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000455194		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000425135		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000340849		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000349320		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000346452		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000349438		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000537234	ENST00000495048		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000469790	ENST00000294413		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000469790	ENST00000374352		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000413854		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000243186		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000455194		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000425135		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000340849		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000349320		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000346452		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000349438		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000469790	ENST00000495048		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000545542	ENST00000294413		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000545542	ENST00000374352		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000413854		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000243186		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000455194		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000425135		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000340849		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000349320		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000346452		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000349438		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-intron	ENST00000545542	ENST00000495048		TCGA	RV	HNSC	TCGA-DQ-7591-01A	KPNA6	chr1	32573735	+	RHCE	chr1	25697031	-
intron-3CDS	ENST00000448637	ENST00000458420		TCGA	RV	HNSC	TCGA-CV-7410-01A	LPP	chr3	187943315	+	CLSTN2	chr3	140251166	+
5UTR-3CDS	ENST00000312675	ENST00000458420		TCGA	RV	HNSC	TCGA-CV-7410-01A	LPP	chr3	187943315	+	CLSTN2	chr3	140251166	+
5UTR-3CDS	ENST00000543006	ENST00000458420		TCGA	RV	HNSC	TCGA-CV-7410-01A	LPP	chr3	187943315	+	CLSTN2	chr3	140251166	+
intron-3CDS	ENST00000471917	ENST00000458420		TCGA	RV	HNSC	TCGA-CV-7410-01A	LPP	chr3	187943315	+	CLSTN2	chr3	140251166	+
Frame-shit	ENST00000416426	ENST00000225298		TCGA	RV	HNSC	TCGA-BB-4227-01A	MSI2	chr17	55478832	+	UTP18	chr17	49374326	+
Frame-shit	ENST00000284073	ENST00000225298		TCGA	RV	HNSC	TCGA-BB-4227-01A	MSI2	chr17	55478832	+	UTP18	chr17	49374326	+
Frame-shit	ENST00000322684	ENST00000225298		TCGA	RV	HNSC	TCGA-BB-4227-01A	MSI2	chr17	55478832	+	UTP18	chr17	49374326	+
Frame-shit	ENST00000442934	ENST00000225298		TCGA	RV	HNSC	TCGA-BB-4227-01A	MSI2	chr17	55478832	+	UTP18	chr17	49374326	+
Frame-shit	ENST00000579180	ENST00000225298		TCGA	RV	HNSC	TCGA-BB-4227-01A	MSI2	chr17	55478832	+	UTP18	chr17	49374326	+
intron-3CDS	ENST00000579505	ENST00000225298		TCGA	RV	HNSC	TCGA-BB-4227-01A	MSI2	chr17	55478832	+	UTP18	chr17	49374326	+
intron-3CDS	ENST00000397063	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	NFE2L2	chr2	178129260	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000397062	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	NFE2L2	chr2	178129260	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000446151	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	NFE2L2	chr2	178129260	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000464747	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	NFE2L2	chr2	178129260	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000423513	ENST00000295049		TCGA	RV	HNSC	TCGA-DQ-7594-01A	NFE2L2	chr2	178129260	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000549920	ENST00000326195		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000549920	ENST00000376545		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000549920	ENST00000396515		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000457111		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000452530		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000416932		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000470464		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000419893		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000448939		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000457970		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000475528		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000457078		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000412443		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000546690		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000421608		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000486105		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000383588		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000383587		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000400609		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000485585		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000426219		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000421042		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000552867		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000454094		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000494413		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000423247		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000420257		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000456791		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000549920	ENST00000495194		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000550645	ENST00000326195		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000550645	ENST00000376545		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000550645	ENST00000396515		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000457111		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000452530		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000416932		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000470464		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000419893		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000448939		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000457970		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000475528		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000457078		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000412443		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000546690		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000421608		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000486105		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000383588		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000383587		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000400609		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000485585		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000426219		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000421042		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000552867		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000454094		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000494413		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000423247		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000420257		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000456791		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000550645	ENST00000495194		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000552588	ENST00000326195		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000552588	ENST00000376545		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000552588	ENST00000396515		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000457111		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000452530		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000416932		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000470464		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000419893		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000448939		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000457970		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000475528		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000457078		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000412443		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000546690		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000421608		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000486105		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000383588		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000383587		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000400609		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000485585		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000426219		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000421042		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000552867		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000454094		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000494413		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000423247		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000420257		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000456791		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000552588	ENST00000495194		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000549273	ENST00000326195		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000549273	ENST00000376545		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000549273	ENST00000396515		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000457111		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000452530		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000416932		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000470464		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000419893		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000448939		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000457970		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000475528		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000457078		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000412443		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000546690		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000421608		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000486105		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000383588		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000383587		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000400609		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000485585		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000426219		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000421042		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000552867		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000454094		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000494413		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000423247		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000420257		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000456791		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000549273	ENST00000495194		TCGA	RV	HNSC	TCGA-CV-7253-01A	RPL18	chr19	49118590	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000259400	ENST00000338488		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000259400	ENST00000395097		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000259400	ENST00000330847		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000525640	ENST00000338488		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000525640	ENST00000395097		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000525640	ENST00000330847		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000534052	ENST00000338488		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000534052	ENST00000395097		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000534052	ENST00000330847		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
intron-intron	ENST00000525847	ENST00000338488		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
intron-intron	ENST00000525847	ENST00000395097		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
intron-intron	ENST00000525847	ENST00000330847		TCGA	RV	HNSC	TCGA-BA-A4IH-01A	STX17	chr9	102691125	+	NR4A3	chr9	102606931	+
5CDS-intron	ENST00000167586	ENST00000264818		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	KRT14	chr17	39738531	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000167586	ENST00000524462		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	KRT14	chr17	39738531	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000167586	ENST00000525621		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	KRT14	chr17	39738531	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000167586	ENST00000529370		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	KRT14	chr17	39738531	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000167586	ENST00000529422		TCGA	RV	HNSC	TCGA-IQ-A61E-01A	KRT14	chr17	39738531	-	TYK2	chr19	10491352	-
Frame-shit	ENST00000402746	ENST00000265965		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000402746	ENST00000528200		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000402746	ENST00000532265		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000402746	ENST00000532212		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000399654	ENST00000265965		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000399654	ENST00000528200		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000399654	ENST00000532265		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000399654	ENST00000532212		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
In-frame	ENST00000406869	ENST00000265965		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000406869	ENST00000528200		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000406869	ENST00000532265		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000406869	ENST00000532212		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000265854	ENST00000265965		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000265854	ENST00000528200		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000265854	ENST00000532265		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000265854	ENST00000532212		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000486340	ENST00000265965		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000486340	ENST00000528200		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000486340	ENST00000532265		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000486340	ENST00000532212		TCGA	RV	HNSC	TCGA-DQ-7591-01A	MAD1L1	chr7	2188787	-	SERGEF	chr11	17809960	-
In-frame	ENST00000262948	ENST00000541212		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000262948	ENST00000340175		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000262948	ENST00000261817		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000262948	ENST00000542602		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
Frame-shit	ENST00000394867	ENST00000541212		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000394867	ENST00000340175		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000394867	ENST00000261817		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000394867	ENST00000542602		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5UTR-3CDS	ENST00000599345	ENST00000541212		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5UTR-intron	ENST00000599345	ENST00000340175		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5UTR-intron	ENST00000599345	ENST00000261817		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5UTR-intron	ENST00000599345	ENST00000542602		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000550697	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000550697	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000550697	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000550697	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548580	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548580	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548580	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548580	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000293422	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000293422	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000293422	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000293422	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000348108	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000348108	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000348108	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000348108	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000549017	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000549017	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000549017	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000549017	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000549566	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000549566	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000549566	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000549566	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000536128	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000536128	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000536128	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000536128	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000547649	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000547649	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000547649	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000547649	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000547408	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000547408	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000547408	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000547408	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551589	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551589	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551589	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551589	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548400	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000548400	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548400	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000548400	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000548293	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000548293	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000548293	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000548293	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551954	ENST00000371754		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000551954	ENST00000469991		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551954	ENST00000371752		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000551954	ENST00000396105		TCGA	RV	HNSC	TCGA-BA-5559-01A	MYL6	chr12	56555358	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000475381	ENST00000351008		TCGA	RV	HNSC	TCGA-CV-7430-01A	NCEH1	chr3	172428637	-	SPATA16	chr3	172674614	-
In-frame	ENST00000273512	ENST00000351008		TCGA	RV	HNSC	TCGA-CV-7430-01A	NCEH1	chr3	172428637	-	SPATA16	chr3	172674614	-
In-frame	ENST00000538775	ENST00000351008		TCGA	RV	HNSC	TCGA-CV-7430-01A	NCEH1	chr3	172428637	-	SPATA16	chr3	172674614	-
5UTR-3CDS	ENST00000543711	ENST00000351008		TCGA	RV	HNSC	TCGA-CV-7430-01A	NCEH1	chr3	172428637	-	SPATA16	chr3	172674614	-
Frame-shit	ENST00000305798	ENST00000395169		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
Frame-shit	ENST00000305798	ENST00000359221		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
Frame-shit	ENST00000305798	ENST00000361569		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
In-frame	ENST00000305798	ENST00000395166		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
Frame-shit	ENST00000305798	ENST00000449047		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
In-frame	ENST00000305798	ENST00000395161		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000305798	ENST00000513839		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000305798	ENST00000395157		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000305798	ENST00000395160		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000505184	ENST00000395169		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000505184	ENST00000359221		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000505184	ENST00000361569		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000505184	ENST00000395166		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000505184	ENST00000449047		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000505184	ENST00000395161		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-intron	ENST00000505184	ENST00000513839		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-intron	ENST00000505184	ENST00000395157		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-intron	ENST00000505184	ENST00000395160		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000509168	ENST00000395169		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000509168	ENST00000359221		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000509168	ENST00000361569		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000509168	ENST00000395166		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000509168	ENST00000449047		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000509168	ENST00000395161		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-intron	ENST00000509168	ENST00000513839		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-intron	ENST00000509168	ENST00000395157		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
intron-intron	ENST00000509168	ENST00000395160		TCGA	RV	HNSC	TCGA-UP-A6WW-01A	TSPAN5	chr4	99579297	-	MAPK10	chr4	86938528	-
5UTR-3UTR	ENST00000319394	ENST00000487305		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-3UTR	ENST00000319394	ENST00000336294		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-3UTR	ENST00000319394	ENST00000456834		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-5UTR	ENST00000319394	ENST00000373634		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-5UTR	ENST00000319394	ENST00000427288		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-3UTR	ENST00000361771	ENST00000487305		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-3UTR	ENST00000361771	ENST00000336294		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-3UTR	ENST00000361771	ENST00000456834		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-5UTR	ENST00000361771	ENST00000373634		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
5UTR-5UTR	ENST00000361771	ENST00000427288		TCGA	RV	HNSC	TCGA-DQ-7591-01A	WDTC1	chr1	27561442	+	TMEM39B	chr1	32540552	+
Frame-shit	ENST00000308742	ENST00000548547		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ALG10B	chr12	38712260	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000308742	ENST00000301464		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ALG10B	chr12	38712260	+	IGFBP6	chr12	53495829	+
5CDS-3UTR	ENST00000308742	ENST00000549628		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ALG10B	chr12	38712260	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000551464	ENST00000548547		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ALG10B	chr12	38712260	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000551464	ENST00000301464		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ALG10B	chr12	38712260	+	IGFBP6	chr12	53495829	+
5CDS-3UTR	ENST00000551464	ENST00000549628		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ALG10B	chr12	38712260	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000361246	ENST00000554684		TCGA	RV	HNSC	TCGA-CN-4735-01A	CDC42BPB	chr14	103470265	-	SMEK1	chr14	91927951	-
Frame-shit	ENST00000361246	ENST00000428424		TCGA	RV	HNSC	TCGA-CN-4735-01A	CDC42BPB	chr14	103470265	-	SMEK1	chr14	91927951	-
Frame-shit	ENST00000361246	ENST00000337238		TCGA	RV	HNSC	TCGA-CN-4735-01A	CDC42BPB	chr14	103470265	-	SMEK1	chr14	91927951	-
Frame-shit	ENST00000361246	ENST00000554943		TCGA	RV	HNSC	TCGA-CN-4735-01A	CDC42BPB	chr14	103470265	-	SMEK1	chr14	91927951	-
Frame-shit	ENST00000361246	ENST00000555462		TCGA	RV	HNSC	TCGA-CN-4735-01A	CDC42BPB	chr14	103470265	-	SMEK1	chr14	91927951	-
5CDS-5UTR	ENST00000361246	ENST00000555718		TCGA	RV	HNSC	TCGA-CN-4735-01A	CDC42BPB	chr14	103470265	-	SMEK1	chr14	91927951	-
intron-intron	ENST00000540367	ENST00000449833		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000540367	ENST00000409161		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000540367	ENST00000423696		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000540367	ENST00000338508		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000540367	ENST00000409530		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000540367	ENST00000449116		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000540367	ENST00000357171		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000540367	ENST00000468619		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000449833		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000409161		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000423696		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000338508		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000409530		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000449116		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000376618	ENST00000357171		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-5UTR	ENST00000376618	ENST00000468619		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000449833		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000409161		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000423696		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000338508		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000409530		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000449116		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-intron	ENST00000265641	ENST00000357171		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
5UTR-5UTR	ENST00000265641	ENST00000468619		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000449833		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000409161		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000423696		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000338508		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000409530		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000449116		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000539743	ENST00000357171		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000539743	ENST00000468619		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000449833		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000409161		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000423696		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000338508		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000409530		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000449116		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000537756	ENST00000357171		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000537756	ENST00000468619		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000449833		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000409161		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000423696		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000338508		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000409530		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000449116		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-intron	ENST00000538994	ENST00000357171		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
intron-5UTR	ENST00000538994	ENST00000468619		TCGA	RV	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68609243	-	SHANK2	chr11	70653276	-
Frame-shit	ENST00000369483	ENST00000369482		TCGA	RV	HNSC	TCGA-CV-A6JU-01A	IGSF3	chr1	117208906	-	C1orf137	chr1	117237381	+
Frame-shit	ENST00000369486	ENST00000369482		TCGA	RV	HNSC	TCGA-CV-A6JU-01A	IGSF3	chr1	117208906	-	C1orf137	chr1	117237381	+
Frame-shit	ENST00000318837	ENST00000369482		TCGA	RV	HNSC	TCGA-CV-A6JU-01A	IGSF3	chr1	117208906	-	C1orf137	chr1	117237381	+
3UTR-intron	ENST00000378565	ENST00000518164		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000521291		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000396070		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000287038		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000523172		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000518164		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000521291		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000396070		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000287038		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000523172		TCGA	RV	HNSC	TCGA-MT-A51X-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
In-frame	ENST00000262878	ENST00000592694		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000262878	ENST00000337679		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
In-frame	ENST00000262878	ENST00000392124		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000262878	ENST00000339413		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000262878	ENST00000592246		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000262878	ENST00000329420		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000262878	ENST00000591784		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
5CDS-intron	ENST00000262878	ENST00000591755		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
5CDS-intron	ENST00000262878	ENST00000587361		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
In-frame	ENST00000373694	ENST00000592694		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000373694	ENST00000337679		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
In-frame	ENST00000373694	ENST00000392124		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000373694	ENST00000339413		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000373694	ENST00000592246		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000373694	ENST00000329420		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
Frame-shit	ENST00000373694	ENST00000591784		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
5CDS-intron	ENST00000373694	ENST00000591755		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
5CDS-intron	ENST00000373694	ENST00000587361		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMHD1	chr20	35547767	-	YIF1B	chr19	38796147	-
In-frame	ENST00000429429	ENST00000302787		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
5CDS-intron	ENST00000429429	ENST00000512189		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
In-frame	ENST00000489418	ENST00000302787		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
5CDS-intron	ENST00000489418	ENST00000512189		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
In-frame	ENST00000318386	ENST00000302787		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
5CDS-intron	ENST00000318386	ENST00000512189		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
In-frame	ENST00000488267	ENST00000302787		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
5CDS-intron	ENST00000488267	ENST00000512189		TCGA	RV	HNSC	TCGA-CR-7370-01A	SLBP	chr4	1696501	-	LETM1	chr4	1827410	-
Frame-shit	ENST00000377892	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
Frame-shit	ENST00000377890	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
Frame-shit	ENST00000377891	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
intron-3CDS	ENST00000377889	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
Frame-shit	ENST00000535296	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
intron-3CDS	ENST00000338663	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
intron-3CDS	ENST00000538682	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
intron-3CDS	ENST00000536981	ENST00000301788		TCGA	RV	HNSC	TCGA-CV-6441-01A	SLC3A2	chr11	62639141	+	POLR2G	chr11	62532654	+
5CDS-intron	ENST00000444636	ENST00000287600		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000444636	ENST00000409772		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000444636	ENST00000477748		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000415673	ENST00000287600		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000415673	ENST00000409772		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000415673	ENST00000477748		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000396563	ENST00000287600		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000396563	ENST00000409772		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000396563	ENST00000477748		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000243810	ENST00000287600		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000243810	ENST00000409772		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
5CDS-intron	ENST00000243810	ENST00000477748		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
intron-intron	ENST00000458341	ENST00000287600		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
intron-intron	ENST00000458341	ENST00000409772		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
intron-intron	ENST00000458341	ENST00000477748		TCGA	RV	HNSC	TCGA-QK-A8Z9-01B	SP140L	chr2	231256944	+	PDE6D	chr2	232603912	-
intron-3CDS	ENST00000504734	ENST00000332549		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000504734	ENST00000393414		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000504734	ENST00000441002		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000504734	ENST00000485335		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000415618	ENST00000332549		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000415618	ENST00000393414		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000415618	ENST00000441002		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000415618	ENST00000485335		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000452673	ENST00000332549		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000452673	ENST00000393414		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000452673	ENST00000441002		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
5CDS-intron	ENST00000452673	ENST00000485335		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000247461	ENST00000332549		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000247461	ENST00000393414		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000247461	ENST00000441002		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
5CDS-intron	ENST00000247461	ENST00000485335		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000512607	ENST00000332549		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000512607	ENST00000393414		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000512607	ENST00000441002		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000512607	ENST00000485335		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000503126	ENST00000332549		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000503126	ENST00000393414		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000503126	ENST00000441002		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000503126	ENST00000485335		TCGA	RV	HNSC	TCGA-CV-5443-01A	CANX	chr5	179157926	+	IL1R2	chr2	102638649	+
In-frame	ENST00000332050	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000332050	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332050	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000332050	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332050	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332050	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332050	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332050	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
In-frame	ENST00000397938	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000397938	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000397938	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000397938	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000397938	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000397938	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000397938	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000397938	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
In-frame	ENST00000406548	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000406548	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000406548	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000406548	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000406548	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000406548	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000406548	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000406548	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
In-frame	ENST00000331029	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000331029	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000331029	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000331029	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000331029	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000331029	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000331029	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000331029	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
In-frame	ENST00000414183	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000414183	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000414183	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000414183	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000414183	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000414183	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000414183	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000414183	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
In-frame	ENST00000333395	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000333395	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000333395	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000333395	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000333395	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000333395	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000333395	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000333395	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
In-frame	ENST00000332035	ENST00000302538		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000332035	ENST00000544583		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332035	ENST00000572441		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000332035	ENST00000574437		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332035	ENST00000291107		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332035	ENST00000543210		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332035	ENST00000536794		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-intron	ENST00000332035	ENST00000573895		TCGA	RV	HNSC	TCGA-CV-7421-01A	EWSR1	chr22	29669853	+	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000361961	ENST00000393330		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361961	ENST00000247829		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361961	ENST00000546561		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000361961	ENST00000552128		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361961	ENST00000552786		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000395670	ENST00000393330		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000395670	ENST00000247829		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000395670	ENST00000546561		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000395670	ENST00000552128		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000395670	ENST00000552786		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000544797	ENST00000393330		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000544797	ENST00000247829		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000544797	ENST00000546561		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000544797	ENST00000552128		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000544797	ENST00000552786		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361418	ENST00000393330		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361418	ENST00000247829		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361418	ENST00000546561		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000361418	ENST00000552128		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000361418	ENST00000552786		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000541463	ENST00000393330		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000541463	ENST00000247829		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000541463	ENST00000546561		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000541463	ENST00000552128		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000541463	ENST00000552786		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547745	ENST00000393330		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547745	ENST00000247829		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547745	ENST00000546561		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
intron-intron	ENST00000547745	ENST00000552128		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547745	ENST00000552786		TCGA	RV	HNSC	TCGA-CR-6478-01A	KIF21A	chr12	39836729	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000425759	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5UTR-5UTR	ENST00000425759	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5UTR-5UTR	ENST00000425759	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000292733	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000292733	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000292733	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5UTR-5UTR	ENST00000542773	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5UTR-5UTR	ENST00000542773	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5UTR-5UTR	ENST00000542773	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000263205	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000263205	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000263205	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000406969	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000406969	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000406969	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000382974	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000382974	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
5CDS-5UTR	ENST00000382974	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000541476	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000541476	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000541476	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000478831	ENST00000328879		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000478831	ENST00000440659		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
intron-5UTR	ENST00000478831	ENST00000470335		TCGA	RV	HNSC	TCGA-BB-8601-01A	MED15	chr22	20862033	+	KLHL22	chr22	20843531	-
In-frame	ENST00000344204	ENST00000337537		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000344204	ENST00000555899		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000344204	ENST00000422769		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
5CDS-5UTR	ENST00000344204	ENST00000553266		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000537187	ENST00000337537		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000537187	ENST00000555899		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000537187	ENST00000422769		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
5CDS-5UTR	ENST00000537187	ENST00000553266		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000509967	ENST00000337537		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000509967	ENST00000555899		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000509967	ENST00000422769		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
5CDS-5UTR	ENST00000509967	ENST00000553266		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-3CDS	ENST00000515710	ENST00000337537		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-3CDS	ENST00000515710	ENST00000555899		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-3CDS	ENST00000515710	ENST00000422769		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-5UTR	ENST00000515710	ENST00000553266		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-3CDS	ENST00000344135	ENST00000337537		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-3CDS	ENST00000344135	ENST00000555899		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-3CDS	ENST00000344135	ENST00000422769		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
intron-5UTR	ENST00000344135	ENST00000553266		TCGA	RV	HNSC	TCGA-BA-5153-01A	TRIO	chr5	14280545	+	PPP2R5E	chr14	63848875	-
In-frame	ENST00000582707	ENST00000261600		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
5CDS-intron	ENST00000582707	ENST00000582313		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
In-frame	ENST00000400266	ENST00000261600		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
5CDS-intron	ENST00000400266	ENST00000582313		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
In-frame	ENST00000383589	ENST00000261600		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
5CDS-intron	ENST00000383589	ENST00000582313		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
In-frame	ENST00000261601	ENST00000261600		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
5CDS-intron	ENST00000261601	ENST00000582313		TCGA	RV	HNSC	TCGA-IQ-A61G-01A	USP14	chr18	180339	+	THOC1	chr18	216633	-
5CDS-intron	ENST00000331925	ENST00000344836		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
5CDS-intron	ENST00000331925	ENST00000381886		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
5CDS-intron	ENST00000331925	ENST00000535863		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
5CDS-intron	ENST00000331925	ENST00000566224		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000573283	ENST00000344836		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000573283	ENST00000381886		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000573283	ENST00000535863		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000573283	ENST00000566224		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575842	ENST00000344836		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575842	ENST00000381886		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575842	ENST00000535863		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575842	ENST00000566224		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575087	ENST00000344836		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575087	ENST00000381886		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575087	ENST00000535863		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
intron-intron	ENST00000575087	ENST00000566224		TCGA	RV	HNSC	TCGA-CV-A460-01A	ACTG1	chr17	79476999	-	USP7	chr16	9030586	-
5UTR-3CDS	ENST00000335793	ENST00000392650		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-3CDS	ENST00000335793	ENST00000388726		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-5UTR	ENST00000335793	ENST00000410094		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-3CDS	ENST00000439510	ENST00000392650		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-3CDS	ENST00000439510	ENST00000388726		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-5UTR	ENST00000439510	ENST00000410094		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-3CDS	ENST00000581014	ENST00000392650		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-3CDS	ENST00000581014	ENST00000388726		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5UTR-5UTR	ENST00000581014	ENST00000410094		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
intron-3CDS	ENST00000582303	ENST00000392650		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
intron-3CDS	ENST00000582303	ENST00000388726		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
intron-5UTR	ENST00000582303	ENST00000410094		TCGA	RV	HNSC	TCGA-CV-A460-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71335079	-
5CDS-intron	ENST00000340170	ENST00000399782		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000340170	ENST00000317582		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000340170	ENST00000543133		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000340170	ENST00000538149		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000340170	ENST00000337612		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000340170	ENST00000493680		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000340170	ENST00000355028		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000340170	ENST00000418951		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000340170	ENST00000485631		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000399782		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000317582		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000543133		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000538149		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000337612		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000493680		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000263208	ENST00000355028		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000263208	ENST00000418951		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000263208	ENST00000485631		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000399782		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000317582		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000543133		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000538149		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000337612		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000493680		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000541063	ENST00000355028		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-3UTR	ENST00000541063	ENST00000418951		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-3UTR	ENST00000541063	ENST00000485631		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000399782		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000317582		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000543133		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000538149		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000337612		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000493680		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000546308	ENST00000355028		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-3UTR	ENST00000546308	ENST00000418951		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-3UTR	ENST00000546308	ENST00000485631		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000399782		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000317582		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000543133		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000538149		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000337612		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000493680		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-intron	ENST00000464189	ENST00000355028		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-3UTR	ENST00000464189	ENST00000418951		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
intron-3UTR	ENST00000464189	ENST00000485631		TCGA	RV	HNSC	TCGA-CV-7255-01A	HIRA	chr22	19418963	-	BCL2L13	chr22	18209443	+
In-frame	ENST00000294981	ENST00000414007		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
5CDS-5UTR	ENST00000294981	ENST00000419187		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
5CDS-intron	ENST00000294981	ENST00000471256		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
In-frame	ENST00000367103	ENST00000414007		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
5CDS-5UTR	ENST00000367103	ENST00000419187		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
5CDS-intron	ENST00000367103	ENST00000471256		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
intron-3CDS	ENST00000479009	ENST00000414007		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
intron-5UTR	ENST00000479009	ENST00000419187		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
intron-intron	ENST00000479009	ENST00000471256		TCGA	RV	HNSC	TCGA-CV-5435-01A	MAPKAPK2	chr1	206858853	+	SRGAP2	chr1	206589249	+
intron-3CDS	ENST00000322723	ENST00000261973		TCGA	RV	HNSC	TCGA-CR-7370-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000540173		TCGA	RV	HNSC	TCGA-CR-7370-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000527432		TCGA	RV	HNSC	TCGA-CR-7370-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000525321		TCGA	RV	HNSC	TCGA-CR-7370-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000526754		TCGA	RV	HNSC	TCGA-CR-7370-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000532483		TCGA	RV	HNSC	TCGA-CR-7370-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
In-frame	ENST00000319550	ENST00000369002		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	NT5DC1	chr6	116436933	+	SEC63	chr6	108204350	-
5CDS-intron	ENST00000319550	ENST00000460009		TCGA	RV	HNSC	TCGA-MT-A7BN-01A	NT5DC1	chr6	116436933	+	SEC63	chr6	108204350	-
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000480033		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000480033		TCGA	RV	HNSC	TCGA-UF-A7J9-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
In-frame	ENST00000288986	ENST00000383202		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
In-frame	ENST00000288986	ENST00000236698		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-5UTR	ENST00000288986	ENST00000434713		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-5UTR	ENST00000288986	ENST00000480733		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-intron	ENST00000288986	ENST00000536929		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
In-frame	ENST00000481752	ENST00000383202		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
In-frame	ENST00000481752	ENST00000236698		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-5UTR	ENST00000481752	ENST00000434713		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-5UTR	ENST00000481752	ENST00000480733		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-intron	ENST00000481752	ENST00000536929		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
In-frame	ENST00000469404	ENST00000383202		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
In-frame	ENST00000469404	ENST00000236698		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-5UTR	ENST00000469404	ENST00000434713		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-5UTR	ENST00000469404	ENST00000480733		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
5CDS-intron	ENST00000469404	ENST00000536929		TCGA	RV	HNSC	TCGA-UF-A7JA-01A	NCK1	chr3	136664594	+	STAG1	chr3	136240259	-
In-frame	ENST00000275230	ENST00000367858		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
Frame-shit	ENST00000275230	ENST00000524929		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000413996		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000237305		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000367857		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000528577		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000475719		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000489458		TCGA	RV	HNSC	TCGA-BA-4078-01A	SLC2A12	chr6	134373516	-	SGK1	chr6	134583286	-
In-frame	ENST00000558939	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000442299	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000317509	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000560589	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000559929	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000559048	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000560939	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000557997	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
Frame-shit	ENST00000539550	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000558201	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000440567	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
intron-3CDS	ENST00000559191	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000558379	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000557907	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
In-frame	ENST00000451782	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
intron-3CDS	ENST00000559574	ENST00000249861		TCGA	RV	HNSC	TCGA-CN-4738-01A	TLE3	chr15	70386871	-	THAP10	chr15	71175247	-
Frame-shit	ENST00000357402	ENST00000300870		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
5CDS-3UTR	ENST00000357402	ENST00000394846		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
intron-3CDS	ENST00000452209	ENST00000300870		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
intron-3UTR	ENST00000452209	ENST00000394846		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
Frame-shit	ENST00000395353	ENST00000300870		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
5CDS-3UTR	ENST00000395353	ENST00000394846		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
intron-3CDS	ENST00000566554	ENST00000300870		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
intron-3UTR	ENST00000566554	ENST00000394846		TCGA	RV	HNSC	TCGA-CR-6474-01A	MVP	chr16	29842394	+	ZNF267	chr16	31925797	+
Frame-shit	ENST00000409003	ENST00000262878		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMD12	chr8	119592954	-	SAMHD1	chr20	35545233	-
Frame-shit	ENST00000409003	ENST00000373694		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMD12	chr8	119592954	-	SAMHD1	chr20	35545233	-
Frame-shit	ENST00000314727	ENST00000262878		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMD12	chr8	119592954	-	SAMHD1	chr20	35545233	-
Frame-shit	ENST00000314727	ENST00000373694		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMD12	chr8	119592954	-	SAMHD1	chr20	35545233	-
intron-3CDS	ENST00000527515	ENST00000262878		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMD12	chr8	119592954	-	SAMHD1	chr20	35545233	-
intron-3CDS	ENST00000527515	ENST00000373694		TCGA	RV	HNSC	TCGA-BA-5559-01A	SAMD12	chr8	119592954	-	SAMHD1	chr20	35545233	-
In-frame	ENST00000369902	ENST00000539909		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000369902	ENST00000286621		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000369902	ENST00000372734		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000369902	ENST00000541550		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
5CDS-intron	ENST00000369902	ENST00000467840		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
In-frame	ENST00000369899	ENST00000539909		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000369899	ENST00000286621		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000369899	ENST00000372734		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000369899	ENST00000541550		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
5CDS-intron	ENST00000369899	ENST00000467840		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
In-frame	ENST00000423559	ENST00000539909		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000423559	ENST00000286621		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000423559	ENST00000372734		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
Frame-shit	ENST00000423559	ENST00000541550		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
5CDS-intron	ENST00000423559	ENST00000467840		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000471000	ENST00000539909		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000471000	ENST00000286621		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000471000	ENST00000372734		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000471000	ENST00000541550		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
intron-intron	ENST00000471000	ENST00000467840		TCGA	RV	HNSC	TCGA-4P-AA8J-01A	SUFU	chr10	104309863	+	ADK	chr10	76468079	+
In-frame	ENST00000412704	ENST00000359206		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000412704	ENST00000358400		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000412704	ENST00000265723		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000412704	ENST00000545634		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000412704	ENST00000453593		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000376887	ENST00000359206		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000376887	ENST00000358400		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000376887	ENST00000265723		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000376887	ENST00000545634		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000376887	ENST00000453593		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000536256	ENST00000359206		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000536256	ENST00000358400		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000536256	ENST00000265723		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000536256	ENST00000545634		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000536256	ENST00000453593		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000431522	ENST00000359206		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000431522	ENST00000358400		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000431522	ENST00000265723		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000431522	ENST00000545634		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
In-frame	ENST00000431522	ENST00000453593		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
3UTR-3CDS	ENST00000538287	ENST00000359206		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
3UTR-3CDS	ENST00000538287	ENST00000358400		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
3UTR-3CDS	ENST00000538287	ENST00000265723		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
3UTR-3CDS	ENST00000538287	ENST00000545634		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
3UTR-3CDS	ENST00000538287	ENST00000453593		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
intron-3CDS	ENST00000474158	ENST00000359206		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
intron-3CDS	ENST00000474158	ENST00000358400		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
intron-3CDS	ENST00000474158	ENST00000265723		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
intron-3CDS	ENST00000474158	ENST00000545634		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
intron-3CDS	ENST00000474158	ENST00000453593		TCGA	RV	HNSC	TCGA-CR-6467-01A	ABCC4	chr13	95829961	-	ABCB4	chr7	87038708	-
intron-3CDS	ENST00000361570	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000361570	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000361570	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000361570	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000304494	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000304494	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000304494	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
5CDS-3UTR	ENST00000304494	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000579755	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000579755	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000579755	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000579755	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000579122	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000579122	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000579122	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
5CDS-3UTR	ENST00000579122	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000578845	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000578845	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000578845	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000578845	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000530628	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000530628	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000530628	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000530628	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000498124	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000498124	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000498124	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
5CDS-3UTR	ENST00000498124	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000498628	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000498628	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000498628	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000498628	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000494262	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000494262	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000494262	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000494262	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000446177	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000446177	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
In-frame	ENST00000446177	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
5CDS-3UTR	ENST00000446177	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000479692	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000479692	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000479692	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000479692	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000497750	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000497750	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000497750	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000497750	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000470819	ENST00000580900		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000470819	ENST00000380172		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3CDS	ENST00000470819	ENST00000460874		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
intron-3UTR	ENST00000470819	ENST00000427788		TCGA	RV	HNSC	TCGA-CQ-7063-01A	CDKN2A	chr9	21974677	-	MTAP	chr9	21815432	+
Frame-shit	ENST00000421834	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000421834	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000421834	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000421834	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370769	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370769	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370769	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000370769	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
3UTR-3CDS	ENST00000312431	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
3UTR-3CDS	ENST00000312431	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
3UTR-3CDS	ENST00000312431	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
3UTR-intron	ENST00000312431	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370754	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370754	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370754	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000370754	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370788	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370788	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000370788	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000370788	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000361203	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000361203	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000361203	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000361203	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000244364	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000244364	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000244364	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000244364	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000446842	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000446842	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000446842	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000446842	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5UTR-3CDS	ENST00000340834	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5UTR-3CDS	ENST00000340834	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5UTR-3CDS	ENST00000340834	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
5UTR-intron	ENST00000340834	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000370765	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000370765	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000370765	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-intron	ENST00000370765	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000518935	ENST00000267620		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000518935	ENST00000342058		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000518935	ENST00000556154		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
intron-intron	ENST00000518935	ENST00000556961		TCGA	RV	HNSC	TCGA-CV-7248-01A	DST	chr6	56368795	-	FBLN5	chr14	92403545	-
In-frame	ENST00000604948	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000604948	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000604948	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000604948	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000557565	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000557565	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000557565	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000557565	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000250377	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000250377	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000250377	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000250377	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000321130	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000321130	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000321130	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000321130	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000534898	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000534898	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000534898	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000534898	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000603544	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000603544	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000603544	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000603544	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000605870	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000605870	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000605870	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000605870	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-3CDS	ENST00000603588	ENST00000396472		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-3CDS	ENST00000603588	ENST00000382406		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-3CDS	ENST00000603588	ENST00000280987		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-intron	ENST00000603588	ENST00000554052		TCGA	RV	HNSC	TCGA-CV-A45U-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
Frame-shit	ENST00000425013	ENST00000367321		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000425013	ENST00000367307		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000425013	ENST00000478643		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
Frame-shit	ENST00000389902	ENST00000367321		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
5CDS-intron	ENST00000389902	ENST00000367307		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
5CDS-3UTR	ENST00000389902	ENST00000478643		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
intron-3CDS	ENST00000469375	ENST00000367321		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
intron-intron	ENST00000469375	ENST00000367307		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
intron-3UTR	ENST00000469375	ENST00000478643		TCGA	RV	HNSC	TCGA-CV-7236-01A	RNF216	chr7	5764955	-	MTHFD1L	chr6	151330955	+
Frame-shit	ENST00000298552	ENST00000372546		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
Frame-shit	ENST00000298552	ENST00000406974		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
Frame-shit	ENST00000298552	ENST00000540102		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
In-frame	ENST00000545250	ENST00000372546		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
In-frame	ENST00000545250	ENST00000406974		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
In-frame	ENST00000545250	ENST00000540102		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
In-frame	ENST00000440111	ENST00000372546		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
In-frame	ENST00000440111	ENST00000406974		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
In-frame	ENST00000440111	ENST00000540102		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
Frame-shit	ENST00000403810	ENST00000372546		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
Frame-shit	ENST00000403810	ENST00000406974		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
Frame-shit	ENST00000403810	ENST00000540102		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
intron-3CDS	ENST00000475903	ENST00000372546		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
intron-3CDS	ENST00000475903	ENST00000406974		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
intron-3CDS	ENST00000475903	ENST00000540102		TCGA	RV	HNSC	TCGA-CR-6487-01A	TSC1	chr9	135796750	-	DOLPP1	chr9	131848988	+
3UTR-intron	ENST00000331595	ENST00000342992		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000460472		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000589042		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000342175		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000359218		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000591111		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-intron	ENST00000331595	ENST00000360870		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000342992		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000460472		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000589042		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000342175		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000359218		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000591111		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
5CDS-intron	ENST00000480756	ENST00000360870		TCGA	RV	HNSC	TCGA-CV-5971-01A	BGN	chrX	152774998	+	TTN	chr2	179511286	-
3UTR-3CDS	ENST00000524814	ENST00000355703		TCGA	RV	HNSC	TCGA-F7-7848-01A	RPS6KB2	chr11	67196711	+	PCNXL3	chr11	65385411	+
3UTR-intron	ENST00000524814	ENST00000531280		TCGA	RV	HNSC	TCGA-F7-7848-01A	RPS6KB2	chr11	67196711	+	PCNXL3	chr11	65385411	+
Frame-shit	ENST00000539188	ENST00000355703		TCGA	RV	HNSC	TCGA-F7-7848-01A	RPS6KB2	chr11	67196711	+	PCNXL3	chr11	65385411	+
5CDS-intron	ENST00000539188	ENST00000531280		TCGA	RV	HNSC	TCGA-F7-7848-01A	RPS6KB2	chr11	67196711	+	PCNXL3	chr11	65385411	+
Frame-shit	ENST00000312629	ENST00000355703		TCGA	RV	HNSC	TCGA-F7-7848-01A	RPS6KB2	chr11	67196711	+	PCNXL3	chr11	65385411	+
5CDS-intron	ENST00000312629	ENST00000531280		TCGA	RV	HNSC	TCGA-F7-7848-01A	RPS6KB2	chr11	67196711	+	PCNXL3	chr11	65385411	+
intron-3CDS	ENST00000354552	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
intron-3CDS	ENST00000331335	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
intron-3CDS	ENST00000398326	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
5UTR-3CDS	ENST00000476723	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
intron-3CDS	ENST00000487087	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
5UTR-3CDS	ENST00000471562	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
5UTR-3CDS	ENST00000383694	ENST00000193391		TCGA	RV	HNSC	TCGA-HD-7753-01A	FILIP1L	chr3	99594916	-	IMPG2	chr3	100988417	-
Frame-shit	ENST00000332556	ENST00000375441		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
Frame-shit	ENST00000332556	ENST00000451881		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
Frame-shit	ENST00000332556	ENST00000326335		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
Frame-shit	ENST00000332556	ENST00000375440		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
5CDS-intron	ENST00000332556	ENST00000463426		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000397181	ENST00000375441		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000397181	ENST00000451881		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000397181	ENST00000326335		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000397181	ENST00000375440		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-intron	ENST00000397181	ENST00000463426		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000471046	ENST00000375441		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000471046	ENST00000451881		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000471046	ENST00000326335		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-3CDS	ENST00000471046	ENST00000375440		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
intron-intron	ENST00000471046	ENST00000463426		TCGA	RV	HNSC	TCGA-CQ-A4C7-01A	LAMP1	chr13	113965182	+	CUL4A	chr13	113917801	+
Frame-shit	ENST00000256646	ENST00000336338		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NOTCH2	chr1	120611948	-	SPAG17	chr1	118524024	-
5CDS-5UTR	ENST00000256646	ENST00000492438		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NOTCH2	chr1	120611948	-	SPAG17	chr1	118524024	-
intron-3CDS	ENST00000602566	ENST00000336338		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NOTCH2	chr1	120611948	-	SPAG17	chr1	118524024	-
intron-5UTR	ENST00000602566	ENST00000492438		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NOTCH2	chr1	120611948	-	SPAG17	chr1	118524024	-
intron-3CDS	ENST00000493703	ENST00000336338		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NOTCH2	chr1	120611948	-	SPAG17	chr1	118524024	-
intron-5UTR	ENST00000493703	ENST00000492438		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NOTCH2	chr1	120611948	-	SPAG17	chr1	118524024	-
5CDS-5UTR	ENST00000381196	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000381196	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000360074	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000360074	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000537002	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000537002	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000397617	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000397617	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000358503	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000358503	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000397611	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000397611	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000355233	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000355233	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000356435	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000356435	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000540109	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000540109	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000486161	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000486161	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000397606	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000397606	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000463477	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
5CDS-5UTR	ENST00000463477	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
intron-5UTR	ENST00000471274	ENST00000522495		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
intron-5UTR	ENST00000471274	ENST00000518237		TCGA	RV	HNSC	TCGA-CV-7407-01A	PTPRD	chr9	8733780	-	IDO1	chr8	39771408	+
intron-3CDS	ENST00000476901	ENST00000454366		TCGA	RV	HNSC	TCGA-CN-A63W-01A	TRMU	chr22	46746360	+	GTSE1	chr22	46725255	+
In-frame	ENST00000290846	ENST00000454366		TCGA	RV	HNSC	TCGA-CN-A63W-01A	TRMU	chr22	46746360	+	GTSE1	chr22	46725255	+
In-frame	ENST00000381019	ENST00000454366		TCGA	RV	HNSC	TCGA-CN-A63W-01A	TRMU	chr22	46746360	+	GTSE1	chr22	46725255	+
3UTR-3CDS	ENST00000424260	ENST00000454366		TCGA	RV	HNSC	TCGA-CN-A63W-01A	TRMU	chr22	46746360	+	GTSE1	chr22	46725255	+
Frame-shit	ENST00000339486	ENST00000269142		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
5CDS-intron	ENST00000339486	ENST00000400466		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
5CDS-intron	ENST00000339486	ENST00000578121		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
Frame-shit	ENST00000581585	ENST00000269142		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
5CDS-intron	ENST00000581585	ENST00000400466		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
5CDS-intron	ENST00000581585	ENST00000578121		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
Frame-shit	ENST00000577501	ENST00000269142		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
5CDS-intron	ENST00000577501	ENST00000400466		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
5CDS-intron	ENST00000577501	ENST00000578121		TCGA	RV	HNSC	TCGA-CV-7101-01A	RIOK3	chr18	21033466	+	TAF4B	chr18	23969809	+
Frame-shit	ENST00000269187	ENST00000372009		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
Frame-shit	ENST00000269187	ENST00000361297		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
5CDS-intron	ENST00000269187	ENST00000477968		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
Frame-shit	ENST00000590986	ENST00000372009		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
Frame-shit	ENST00000590986	ENST00000361297		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
5CDS-intron	ENST00000590986	ENST00000477968		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
Frame-shit	ENST00000440549	ENST00000372009		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
Frame-shit	ENST00000440549	ENST00000361297		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
5CDS-intron	ENST00000440549	ENST00000477968		TCGA	RV	HNSC	TCGA-CV-7235-01A	SLC39A6	chr18	33694060	-	MAST2	chr1	46485268	+
Frame-shit	ENST00000260356	ENST00000519301		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000520407		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000523079		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000338921		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000356819		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000287845		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000341377		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000287842		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000521670		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000405005		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000520502		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000260356	ENST00000539990		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000260356	ENST00000523681		TCGA	RV	HNSC	TCGA-CN-5370-01A	THBS1	chr15	39876623	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000382303	ENST00000453981		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-3CDS	ENST00000382303	ENST00000432829		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-3CDS	ENST00000382303	ENST00000469391		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-intron	ENST00000382303	ENST00000382331		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-intron	ENST00000382303	ENST00000382329		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-intron	ENST00000382303	ENST00000493666		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
3UTR-3CDS	ENST00000489369	ENST00000453981		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
3UTR-3CDS	ENST00000489369	ENST00000432829		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
3UTR-3CDS	ENST00000489369	ENST00000469391		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
3UTR-intron	ENST00000489369	ENST00000382331		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
3UTR-intron	ENST00000489369	ENST00000382329		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
3UTR-intron	ENST00000489369	ENST00000493666		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-3CDS	ENST00000382297	ENST00000453981		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-3CDS	ENST00000382297	ENST00000432829		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-3CDS	ENST00000382297	ENST00000469391		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-intron	ENST00000382297	ENST00000382331		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-intron	ENST00000382297	ENST00000382329		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-intron	ENST00000382297	ENST00000493666		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-3CDS	ENST00000382293	ENST00000453981		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-3CDS	ENST00000382293	ENST00000432829		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-3CDS	ENST00000382293	ENST00000469391		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-intron	ENST00000382293	ENST00000382331		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-intron	ENST00000382293	ENST00000382329		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
intron-intron	ENST00000382293	ENST00000493666		TCGA	RV	HNSC	TCGA-F7-A50J-01A	KANK1	chr9	504754	+	DOCK8	chr9	441875	+
5UTR-3CDS	ENST00000586869	ENST00000158009		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NLE1	chr17	33466254	-	FNDC8	chr17	33454061	+
Frame-shit	ENST00000442241	ENST00000158009		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NLE1	chr17	33466254	-	FNDC8	chr17	33454061	+
intron-3CDS	ENST00000360831	ENST00000158009		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NLE1	chr17	33466254	-	FNDC8	chr17	33454061	+
5UTR-3CDS	ENST00000593176	ENST00000158009		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NLE1	chr17	33466254	-	FNDC8	chr17	33454061	+
intron-3UTR	ENST00000509122	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000509122	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000509122	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000509122	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000512981	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000512981	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000512981	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
3UTR-3UTR	ENST00000512981	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000396448	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000396448	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000396448	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000396448	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000264312	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000264312	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000264312	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000264312	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000381473	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000381473	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000381473	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000381473	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000444354	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000444354	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000444354	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000444354	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000506801	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000506801	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000506801	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000506801	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000425583	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000425583	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000425583	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
5UTR-3UTR	ENST00000425583	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000508293	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000508293	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000508293	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000508293	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000513391	ENST00000396613		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000513391	ENST00000377959		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000513391	ENST00000377960		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
intron-3UTR	ENST00000513391	ENST00000474050		TCGA	RV	HNSC	TCGA-CN-A63U-01A	OCIAD1	chr4	48833266	+	GLIPR2	chr9	36162359	+
Frame-shit	ENST00000248553	ENST00000339514		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000248553	ENST00000392318		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000248553	ENST00000304164		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000248553	ENST00000392316		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000248553	ENST00000439065		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
5CDS-intron	ENST00000248553	ENST00000496992		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000429938	ENST00000339514		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000429938	ENST00000392318		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000429938	ENST00000304164		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000429938	ENST00000392316		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000429938	ENST00000439065		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
5CDS-intron	ENST00000429938	ENST00000496992		TCGA	RV	HNSC	TCGA-CV-6960-01A	HSPB1	chr7	75933609	+	MYO1B	chr2	192275792	+
Frame-shit	ENST00000371621	ENST00000337233		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
Frame-shit	ENST00000371621	ENST00000359949		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5CDS-3UTR	ENST00000371621	ENST00000540930		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5CDS-3UTR	ENST00000371621	ENST00000541532		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5CDS-intron	ENST00000371621	ENST00000543171		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5UTR-3CDS	ENST00000541713	ENST00000337233		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5UTR-3CDS	ENST00000541713	ENST00000359949		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5UTR-3UTR	ENST00000541713	ENST00000540930		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5UTR-3UTR	ENST00000541713	ENST00000541532		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5UTR-intron	ENST00000541713	ENST00000543171		TCGA	RV	HNSC	TCGA-CN-5364-01A	PTPN1	chr20	49127127	+	P2RX4	chr12	121654937	+
5CDS-5UTR	ENST00000339276	ENST00000228741		TCGA	RV	HNSC	TCGA-D6-6517-01A	SFN	chr1	27190947	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000339276	ENST00000552142		TCGA	RV	HNSC	TCGA-D6-6517-01A	SFN	chr1	27190947	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000339276	ENST00000549529		TCGA	RV	HNSC	TCGA-D6-6517-01A	SFN	chr1	27190947	+	ELK3	chr12	96588323	+
In-frame	ENST00000273038	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
In-frame	ENST00000273038	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
5CDS-intron	ENST00000273038	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
In-frame	ENST00000430365	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
In-frame	ENST00000430365	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
5CDS-intron	ENST00000430365	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
Frame-shit	ENST00000404339	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
Frame-shit	ENST00000404339	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
5CDS-intron	ENST00000404339	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-3CDS	ENST00000480288	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-3CDS	ENST00000480288	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-intron	ENST00000480288	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
In-frame	ENST00000413604	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
In-frame	ENST00000413604	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
5CDS-intron	ENST00000413604	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-3CDS	ENST00000451674	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-3CDS	ENST00000451674	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-intron	ENST00000451674	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-3CDS	ENST00000424529	ENST00000256509		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-3CDS	ENST00000424529	ENST00000397491		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
intron-intron	ENST00000424529	ENST00000489224		TCGA	RV	HNSC	TCGA-D6-6826-01A	VGLL4	chr3	11643307	-	CHL1	chr3	419501	+
In-frame	ENST00000400137	ENST00000460006		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
In-frame	ENST00000400137	ENST00000379062		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000400137	ENST00000379070		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000400137	ENST00000535100		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
In-frame	ENST00000381724	ENST00000460006		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
In-frame	ENST00000381724	ENST00000379062		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000381724	ENST00000379070		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000381724	ENST00000535100		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3CDS	ENST00000460490	ENST00000460006		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3CDS	ENST00000460490	ENST00000379062		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3UTR	ENST00000460490	ENST00000379070		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3UTR	ENST00000460490	ENST00000535100		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
Frame-shit	ENST00000381719	ENST00000460006		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
Frame-shit	ENST00000381719	ENST00000379062		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000381719	ENST00000379070		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000381719	ENST00000535100		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
In-frame	ENST00000381715	ENST00000460006		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
In-frame	ENST00000381715	ENST00000379062		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000381715	ENST00000379070		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-3UTR	ENST00000381715	ENST00000535100		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3CDS	ENST00000439640	ENST00000460006		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3CDS	ENST00000439640	ENST00000379062		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3UTR	ENST00000439640	ENST00000379070		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
intron-3UTR	ENST00000439640	ENST00000535100		TCGA	RV	HNSC	TCGA-CV-6937-01A	FKBP1A	chr20	1373478	-	CDS2	chr20	5169713	+
5CDS-5UTR	ENST00000340513	ENST00000375114		TCGA	RV	HNSC	TCGA-CV-6959-01A	TPX2	chr20	30366787	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000340513	ENST00000246194		TCGA	RV	HNSC	TCGA-CV-6959-01A	TPX2	chr20	30366787	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000340513	ENST00000493399		TCGA	RV	HNSC	TCGA-CV-6959-01A	TPX2	chr20	30366787	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000300403	ENST00000375114		TCGA	RV	HNSC	TCGA-CV-6959-01A	TPX2	chr20	30366787	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000300403	ENST00000246194		TCGA	RV	HNSC	TCGA-CV-6959-01A	TPX2	chr20	30366787	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000300403	ENST00000493399		TCGA	RV	HNSC	TCGA-CV-6959-01A	TPX2	chr20	30366787	+	RALY	chr20	32659872	+
5CDS-intron	ENST00000251879	ENST00000397745		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
5CDS-intron	ENST00000251879	ENST00000397747		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
5CDS-intron	ENST00000414202	ENST00000397745		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
5CDS-intron	ENST00000414202	ENST00000397747		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
5UTR-intron	ENST00000381532	ENST00000397745		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
5UTR-intron	ENST00000381532	ENST00000397747		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
intron-intron	ENST00000418622	ENST00000397745		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
intron-intron	ENST00000418622	ENST00000397747		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
intron-intron	ENST00000449720	ENST00000397745		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
intron-intron	ENST00000449720	ENST00000397747		TCGA	RV	HNSC	TCGA-HL-7533-01A	KIAA1432	chr9	5629453	+	PDCD1LG2	chr9	5549335	+
intron-intron	ENST00000270189	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000270189	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000429089	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000429089	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000220809	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000220809	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000352041	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000352041	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000519510	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000519510	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000429710	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000429710	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524009	ENST00000216297		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524009	ENST00000555943		TCGA	RV	HNSC	TCGA-DQ-7589-01A	PLAT	chr8	42032755	-	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000344532	ENST00000313640		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
Frame-shit	ENST00000344532	ENST00000313624		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
Frame-shit	ENST00000344532	ENST00000398762		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
5CDS-5UTR	ENST00000344532	ENST00000476830		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
Frame-shit	ENST00000430805	ENST00000313640		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
Frame-shit	ENST00000430805	ENST00000313624		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
Frame-shit	ENST00000430805	ENST00000398762		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
5CDS-5UTR	ENST00000430805	ENST00000476830		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000544492	ENST00000313640		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000544492	ENST00000313624		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000544492	ENST00000398762		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-5UTR	ENST00000544492	ENST00000476830		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000544904	ENST00000313640		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000544904	ENST00000313624		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000544904	ENST00000398762		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-5UTR	ENST00000544904	ENST00000476830		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000481144	ENST00000313640		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000481144	ENST00000313624		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-3CDS	ENST00000481144	ENST00000398762		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
intron-5UTR	ENST00000481144	ENST00000476830		TCGA	RV	HNSC	TCGA-RS-A6TP-01A	RCBTB2	chr13	49084765	-	EPSTI1	chr13	43500565	-
In-frame	ENST00000269221	ENST00000338910		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	C18orf8	chr18	21089243	+	PSPC1	chr13	20346683	-
5CDS-intron	ENST00000269221	ENST00000497722		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	C18orf8	chr18	21089243	+	PSPC1	chr13	20346683	-
intron-3CDS	ENST00000590868	ENST00000338910		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	C18orf8	chr18	21089243	+	PSPC1	chr13	20346683	-
intron-intron	ENST00000590868	ENST00000497722		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	C18orf8	chr18	21089243	+	PSPC1	chr13	20346683	-
intron-3CDS	ENST00000591367	ENST00000338910		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	C18orf8	chr18	21089243	+	PSPC1	chr13	20346683	-
intron-intron	ENST00000591367	ENST00000497722		TCGA	RV	HNSC	TCGA-BA-A6DE-01A	C18orf8	chr18	21089243	+	PSPC1	chr13	20346683	-
5CDS-intron	ENST00000272227	ENST00000527132		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5CDS-intron	ENST00000272227	ENST00000396505		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5CDS-intron	ENST00000272227	ENST00000326932		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5CDS-intron	ENST00000272227	ENST00000525493		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5CDS-intron	ENST00000272227	ENST00000450094		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404371	ENST00000527132		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404371	ENST00000396505		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404371	ENST00000326932		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404371	ENST00000525493		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404371	ENST00000450094		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404824	ENST00000527132		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404824	ENST00000396505		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404824	ENST00000326932		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404824	ENST00000525493		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000404824	ENST00000450094		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000540494	ENST00000527132		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000540494	ENST00000396505		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000540494	ENST00000326932		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000540494	ENST00000525493		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000540494	ENST00000450094		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000381611	ENST00000527132		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000381611	ENST00000396505		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000381611	ENST00000326932		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000381611	ENST00000525493		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
intron-intron	ENST00000381611	ENST00000450094		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000489662	ENST00000527132		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000489662	ENST00000396505		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000489662	ENST00000326932		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000489662	ENST00000525493		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
5UTR-intron	ENST00000489662	ENST00000450094		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	PDIA6	chr2	10952804	-	DKK3	chr11	11990034	-
Frame-shit	ENST00000353265	ENST00000295049		TCGA	RV	HNSC	TCGA-HD-7753-01A	PARD6G	chr18	78005160	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000470488	ENST00000295049		TCGA	RV	HNSC	TCGA-HD-7753-01A	PARD6G	chr18	78005160	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000221476	ENST00000263593		TCGA	RV	HNSC	TCGA-CV-5971-01A	CKM	chr19	45809672	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000221476	ENST00000545756		TCGA	RV	HNSC	TCGA-CV-5971-01A	CKM	chr19	45809672	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000221476	ENST00000525730		TCGA	RV	HNSC	TCGA-CV-5971-01A	CKM	chr19	45809672	-	SIAE	chr11	124543777	-
In-frame	ENST00000357674	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000357674	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000357674	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000357674	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000357674	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000314062	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000314062	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000314062	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000314062	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000314062	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000346964	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000346964	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000346964	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000346964	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000346964	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000419354	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000419354	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000419354	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000419354	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000419354	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000452595	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000452595	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000452595	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000452595	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-intron	ENST00000452595	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000422288	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000422288	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000422288	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000422288	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000422288	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000448528	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000448528	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000448528	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000448528	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000448528	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000443183	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000443183	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000443183	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-3CDS	ENST00000443183	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
intron-intron	ENST00000443183	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000450955	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000450955	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000450955	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000450955	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000450955	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000392382	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000392382	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000392382	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
In-frame	ENST00000392382	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000392382	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5UTR-3CDS	ENST00000485409	ENST00000392379		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5UTR-3CDS	ENST00000485409	ENST00000392378		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5UTR-3CDS	ENST00000485409	ENST00000358186		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5UTR-3CDS	ENST00000485409	ENST00000441275		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5UTR-intron	ENST00000485409	ENST00000476764		TCGA	RV	HNSC	TCGA-P3-A5QA-01A	DLG1	chr3	197023217	-	BDH1	chr3	197241287	-
5CDS-intron	ENST00000262948	ENST00000546333		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	RP11-87C12.2	chr12	122353762	+
5CDS-intron	ENST00000394867	ENST00000546333		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	RP11-87C12.2	chr12	122353762	+
5UTR-intron	ENST00000599345	ENST00000546333		TCGA	RV	HNSC	TCGA-BA-A4IG-01A	MAP2K2	chr19	4110507	-	RP11-87C12.2	chr12	122353762	+
In-frame	ENST00000393386	ENST00000289407		TCGA	RV	HNSC	TCGA-CV-5434-01A	PTPRZ1	chr7	121695141	+	TSPAN33	chr7	128801520	+
In-frame	ENST00000449182	ENST00000289407		TCGA	RV	HNSC	TCGA-CV-5434-01A	PTPRZ1	chr7	121695141	+	TSPAN33	chr7	128801520	+
intron-3CDS	ENST00000483028	ENST00000289407		TCGA	RV	HNSC	TCGA-CV-5434-01A	PTPRZ1	chr7	121695141	+	TSPAN33	chr7	128801520	+
Frame-shit	ENST00000361757	ENST00000539243		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000361757	ENST00000313093		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000361757	ENST00000536472		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000361757	ENST00000590214		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000361757	ENST00000586866		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000361757	ENST00000543365		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000361757	ENST00000592335		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000361757	ENST00000590577		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000361757	ENST00000591169		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000587024	ENST00000539243		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000587024	ENST00000313093		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000587024	ENST00000536472		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000587024	ENST00000590214		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000587024	ENST00000586866		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000587024	ENST00000543365		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000587024	ENST00000592335		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000587024	ENST00000590577		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000587024	ENST00000591169		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000438103	ENST00000539243		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000438103	ENST00000313093		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
Frame-shit	ENST00000438103	ENST00000536472		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000438103	ENST00000590214		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000438103	ENST00000586866		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
In-frame	ENST00000438103	ENST00000543365		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000438103	ENST00000592335		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000438103	ENST00000590577		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-intron	ENST00000438103	ENST00000591169		TCGA	RV	HNSC	TCGA-UF-A7JC-01A	SBNO2	chr19	1116020	-	HMHA1	chr19	1080463	+
5CDS-3UTR	ENST00000271069	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000271069	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000271069	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000271069	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000271069	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000373672	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000373672	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000373672	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000373672	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000373672	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000461217	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000461217	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000461217	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000461217	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000461217	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000373668	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000373668	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000373668	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-intron	ENST00000373668	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-intron	ENST00000373668	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-5UTR	ENST00000301764	ENST00000300150		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5CDS-5UTR	ENST00000301764	ENST00000337979		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5CDS-5UTR	ENST00000301764	ENST00000535361		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5CDS-5UTR	ENST00000301764	ENST00000437946		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5CDS-5UTR	ENST00000301764	ENST00000529177		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000450997	ENST00000300150		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000450997	ENST00000337979		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000450997	ENST00000535361		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000450997	ENST00000437946		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000450997	ENST00000529177		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000451943	ENST00000300150		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000451943	ENST00000337979		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000451943	ENST00000535361		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000451943	ENST00000437946		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000451943	ENST00000529177		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000538470	ENST00000300150		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000538470	ENST00000337979		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000538470	ENST00000535361		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000538470	ENST00000437946		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
intron-5UTR	ENST00000538470	ENST00000529177		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5UTR-5UTR	ENST00000545930	ENST00000300150		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5UTR-5UTR	ENST00000545930	ENST00000337979		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5UTR-5UTR	ENST00000545930	ENST00000535361		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5UTR-5UTR	ENST00000545930	ENST00000437946		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
5UTR-5UTR	ENST00000545930	ENST00000529177		TCGA	RV	HNSC	TCGA-QK-A6VB-01A	DDB1	chr11	61091451	-	STX3	chr11	59540684	+
3UTR-3CDS	ENST00000398606	ENST00000284727		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
3UTR-intron	ENST00000398606	ENST00000409194		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
3UTR-intron	ENST00000398606	ENST00000392541		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
Frame-shit	ENST00000398603	ENST00000284727		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000398603	ENST00000409194		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000398603	ENST00000392541		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
intron-3CDS	ENST00000498765	ENST00000284727		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
intron-intron	ENST00000498765	ENST00000409194		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
intron-intron	ENST00000498765	ENST00000392541		TCGA	RV	HNSC	TCGA-D6-6517-01A	GSTP1	chr11	67354121	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000252244	ENST00000360359		TCGA	RV	HNSC	TCGA-CV-6954-01A	KRT1	chr12	53068520	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000252244	ENST00000535627		TCGA	RV	HNSC	TCGA-CV-6954-01A	KRT1	chr12	53068520	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000252244	ENST00000470698		TCGA	RV	HNSC	TCGA-CV-6954-01A	KRT1	chr12	53068520	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000374399	ENST00000361548		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000374399	ENST00000342072		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000374399	ENST00000350501		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000374399	ENST00000530984		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000374399	ENST00000356046		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000374399	ENST00000236255		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000003912	ENST00000361548		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000003912	ENST00000342072		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000003912	ENST00000350501		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000003912	ENST00000530984		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000003912	ENST00000356046		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000003912	ENST00000236255		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000358028	ENST00000361548		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000358028	ENST00000342072		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000358028	ENST00000350501		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000358028	ENST00000530984		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000358028	ENST00000356046		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000358028	ENST00000236255		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000339255	ENST00000361548		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000339255	ENST00000342072		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000339255	ENST00000350501		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000339255	ENST00000530984		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000339255	ENST00000356046		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000339255	ENST00000236255		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000428131	ENST00000361548		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000428131	ENST00000342072		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000428131	ENST00000350501		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000428131	ENST00000530984		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000428131	ENST00000356046		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
5CDS-intron	ENST00000428131	ENST00000236255		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
intron-intron	ENST00000488155	ENST00000361548		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
intron-intron	ENST00000488155	ENST00000342072		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
intron-intron	ENST00000488155	ENST00000350501		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
intron-intron	ENST00000488155	ENST00000530984		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
intron-intron	ENST00000488155	ENST00000356046		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
intron-intron	ENST00000488155	ENST00000236255		TCGA	RV	HNSC	TCGA-HD-8314-01A	NIPAL3	chr1	24779994	+	GRHL3	chr1	24690675	+
In-frame	ENST00000297438	ENST00000220751		TCGA	RV	HNSC	TCGA-CV-5430-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90798821	+
In-frame	ENST00000297438	ENST00000540020		TCGA	RV	HNSC	TCGA-CV-5430-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90798821	+
In-frame	ENST00000451899	ENST00000220751		TCGA	RV	HNSC	TCGA-CV-5430-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90798821	+
In-frame	ENST00000451899	ENST00000540020		TCGA	RV	HNSC	TCGA-CV-5430-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90798821	+
In-frame	ENST00000520659	ENST00000220751		TCGA	RV	HNSC	TCGA-CV-5430-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90798821	+
In-frame	ENST00000520659	ENST00000540020		TCGA	RV	HNSC	TCGA-CV-5430-01A	OSGIN2	chr8	90926974	+	RIPK2	chr8	90798821	+
In-frame	ENST00000336868	ENST00000431639		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
In-frame	ENST00000336868	ENST00000316024		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
In-frame	ENST00000336868	ENST00000457584		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
In-frame	ENST00000336868	ENST00000396463		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
In-frame	ENST00000336868	ENST00000534050		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000577098	ENST00000431639		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000577098	ENST00000316024		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000577098	ENST00000457584		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000577098	ENST00000396463		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000577098	ENST00000534050		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000575801	ENST00000431639		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000575801	ENST00000316024		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000575801	ENST00000457584		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000575801	ENST00000396463		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000575801	ENST00000534050		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000538650	ENST00000431639		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000538650	ENST00000316024		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000538650	ENST00000457584		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000538650	ENST00000396463		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000538650	ENST00000534050		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000537628	ENST00000431639		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000537628	ENST00000316024		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000537628	ENST00000457584		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000537628	ENST00000396463		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000537628	ENST00000534050		TCGA	RV	HNSC	TCGA-CQ-7065-01A	NXN	chr17	882559	-	WRAP53	chr17	7604059	+
5CDS-intron	ENST00000243924	ENST00000513761		TCGA	RV	HNSC	TCGA-HD-A633-01A	PI3	chr20	43805185	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000243924	ENST00000347613		TCGA	RV	HNSC	TCGA-HD-A633-01A	PI3	chr20	43805185	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000243924	ENST00000360642		TCGA	RV	HNSC	TCGA-HD-A633-01A	PI3	chr20	43805185	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000243924	ENST00000504131		TCGA	RV	HNSC	TCGA-HD-A633-01A	PI3	chr20	43805185	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000243924	ENST00000506924		TCGA	RV	HNSC	TCGA-HD-A633-01A	PI3	chr20	43805185	+	CLCN3	chr4	170623929	+
5UTR-3CDS	ENST00000407597	ENST00000467482		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000407597	ENST00000380929		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-intron	ENST00000407597	ENST00000487206		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000424279	ENST00000467482		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000424279	ENST00000380929		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-intron	ENST00000424279	ENST00000487206		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000536365	ENST00000467482		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000536365	ENST00000380929		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-intron	ENST00000536365	ENST00000487206		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000380961	ENST00000467482		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000380961	ENST00000380929		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-intron	ENST00000380961	ENST00000487206		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000217964	ENST00000467482		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-3CDS	ENST00000217964	ENST00000380929		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
5UTR-intron	ENST00000217964	ENST00000487206		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
intron-3CDS	ENST00000497555	ENST00000467482		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
intron-3CDS	ENST00000497555	ENST00000380929		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
intron-intron	ENST00000497555	ENST00000487206		TCGA	RV	HNSC	TCGA-HL-7533-01A	TBL1X	chrX	9469889	+	GPR143	chrX	9711713	-
Frame-shit	ENST00000264249	ENST00000425019		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000324219		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000350198		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000302217		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000413150		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000347699		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000456652		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000264249	ENST00000350878		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
5CDS-intron	ENST00000264249	ENST00000498066		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000425019		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000324219		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000350198		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000302217		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000413150		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000347699		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000456652		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
In-frame	ENST00000542617	ENST00000350878		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
5CDS-intron	ENST00000542617	ENST00000498066		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000425019		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000324219		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000350198		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000302217		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000413150		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000347699		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000456652		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
Frame-shit	ENST00000409701	ENST00000350878		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
5CDS-intron	ENST00000409701	ENST00000498066		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000425019		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000324219		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000350198		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000302217		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000413150		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000347699		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000456652		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-3CDS	ENST00000485085	ENST00000350878		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
intron-intron	ENST00000485085	ENST00000498066		TCGA	RV	HNSC	TCGA-CQ-A4CH-01A	CHST10	chr2	101019026	-	MAP4K4	chr2	102440390	+
5CDS-intron	ENST00000598884	ENST00000536044		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000598884	ENST00000540413		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000598884	ENST00000263431		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000598884	ENST00000542049		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000301457	ENST00000536044		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000301457	ENST00000540413		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000301457	ENST00000263431		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
5CDS-intron	ENST00000301457	ENST00000542049		TCGA	RV	HNSC	TCGA-D6-6515-01A	NDUFA7	chr19	8381380	-	PRKCG	chr19	54406327	+
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
In-frame	ENST00000369774	ENST00000369764		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
In-frame	ENST00000355946	ENST00000369764		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	HNSC	TCGA-DQ-5630-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105642599	-
In-frame	ENST00000470487	ENST00000261024		TCGA	RV	HNSC	TCGA-CV-7261-01A	GOLIM4	chr3	167742314	-	SLC40A1	chr2	190440046	-
5CDS-5UTR	ENST00000470487	ENST00000418714		TCGA	RV	HNSC	TCGA-CV-7261-01A	GOLIM4	chr3	167742314	-	SLC40A1	chr2	190440046	-
In-frame	ENST00000309027	ENST00000261024		TCGA	RV	HNSC	TCGA-CV-7261-01A	GOLIM4	chr3	167742314	-	SLC40A1	chr2	190440046	-
5CDS-5UTR	ENST00000309027	ENST00000418714		TCGA	RV	HNSC	TCGA-CV-7261-01A	GOLIM4	chr3	167742314	-	SLC40A1	chr2	190440046	-
In-frame	ENST00000377387	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
In-frame	ENST00000377390	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
Frame-shit	ENST00000377394	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
In-frame	ENST00000227503	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
In-frame	ENST00000334944	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
In-frame	ENST00000422298	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
Frame-shit	ENST00000433274	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
intron-3CDS	ENST00000489544	ENST00000255695		TCGA	RV	HNSC	TCGA-BB-8596-01A	SF1	chr11	64534372	-	HRASLS2	chr11	63326132	-
In-frame	ENST00000254043	ENST00000421745		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	KRT15	chr17	39669998	-	BIRC6	chr2	32820101	+
Frame-shit	ENST00000393974	ENST00000421745		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	KRT15	chr17	39669998	-	BIRC6	chr2	32820101	+
Frame-shit	ENST00000393981	ENST00000421745		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	KRT15	chr17	39669998	-	BIRC6	chr2	32820101	+
Frame-shit	ENST00000393976	ENST00000421745		TCGA	RV	HNSC	TCGA-T2-A6X0-01A	KRT15	chr17	39669998	-	BIRC6	chr2	32820101	+
In-frame	ENST00000537045	ENST00000355303		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000537045	ENST00000398543		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000537045	ENST00000538023		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000537045	ENST00000316296		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000537045	ENST00000530676		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
5CDS-intron	ENST00000537045	ENST00000531349		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
5CDS-intron	ENST00000537045	ENST00000525494		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000263196	ENST00000355303		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000263196	ENST00000398543		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000263196	ENST00000538023		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000263196	ENST00000316296		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000263196	ENST00000530676		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
5CDS-intron	ENST00000263196	ENST00000531349		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
5CDS-intron	ENST00000263196	ENST00000525494		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000545799	ENST00000355303		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000545799	ENST00000398543		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000545799	ENST00000538023		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000545799	ENST00000316296		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
In-frame	ENST00000545799	ENST00000530676		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
5CDS-intron	ENST00000545799	ENST00000531349		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
5CDS-intron	ENST00000545799	ENST00000525494		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-3CDS	ENST00000473832	ENST00000355303		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-3CDS	ENST00000473832	ENST00000398543		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-3CDS	ENST00000473832	ENST00000538023		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-3CDS	ENST00000473832	ENST00000316296		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-3CDS	ENST00000473832	ENST00000530676		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-intron	ENST00000473832	ENST00000531349		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
intron-intron	ENST00000473832	ENST00000525494		TCGA	RV	HNSC	TCGA-CR-7399-01A	DGCR2	chr22	19109641	-	ANO1	chr11	69949172	+
Frame-shit	ENST00000330722	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-A6JZ-01A	KRT6A	chr12	52880958	-	CXCR5	chr11	118754475	+
5UTR-3CDS	ENST00000371399	ENST00000542507		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000371399	ENST00000373812		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000371399	ENST00000541996		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3UTR	ENST00000371399	ENST00000478283		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000072644	ENST00000542507		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000072644	ENST00000373812		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000072644	ENST00000541996		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000072644	ENST00000478283		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
In-frame	ENST00000539954	ENST00000542507		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000539954	ENST00000373812		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
In-frame	ENST00000539954	ENST00000541996		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000539954	ENST00000478283		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000469457	ENST00000542507		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000469457	ENST00000373812		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3CDS	ENST00000469457	ENST00000541996		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
5UTR-3UTR	ENST00000469457	ENST00000478283		TCGA	RV	HNSC	TCGA-CQ-6228-01A	YIPF1	chr1	54343988	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000541908	ENST00000261195		TCGA	RV	HNSC	TCGA-F7-A50G-01A	AEBP2	chr12	19646920	+	GYS2	chr12	21699404	-
Frame-shit	ENST00000398864	ENST00000261195		TCGA	RV	HNSC	TCGA-F7-A50G-01A	AEBP2	chr12	19646920	+	GYS2	chr12	21699404	-
Frame-shit	ENST00000266508	ENST00000261195		TCGA	RV	HNSC	TCGA-F7-A50G-01A	AEBP2	chr12	19646920	+	GYS2	chr12	21699404	-
Frame-shit	ENST00000360995	ENST00000261195		TCGA	RV	HNSC	TCGA-F7-A50G-01A	AEBP2	chr12	19646920	+	GYS2	chr12	21699404	-
Frame-shit	ENST00000313949	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000313949	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-3CDS	ENST00000371098	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-intron	ENST00000371098	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
Frame-shit	ENST00000371075	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000371075	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000371100	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000371100	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-3CDS	ENST00000371099	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-intron	ENST00000371099	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000371102	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000371102	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
Frame-shit	ENST00000464624	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000464624	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-3CDS	ENST00000306120	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-intron	ENST00000306120	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000371095	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000371095	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000371085	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000371085	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000354359	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000354359	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000265620	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000265620	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
In-frame	ENST00000306090	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000306090	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-3CDS	ENST00000371081	ENST00000539317		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
intron-intron	ENST00000371081	ENST00000487871		TCGA	RV	HNSC	TCGA-H7-7774-01A	GNAS	chr20	57486241	+	SMAP2	chr1	40878688	+
5CDS-intron	ENST00000367590	ENST00000367627		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
5CDS-intron	ENST00000367590	ENST00000352445		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
5CDS-intron	ENST00000367590	ENST00000495145		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
intron-intron	ENST00000367589	ENST00000367627		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
intron-intron	ENST00000367589	ENST00000352445		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
intron-intron	ENST00000367589	ENST00000495145		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
intron-intron	ENST00000467345	ENST00000367627		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
intron-intron	ENST00000467345	ENST00000352445		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
intron-intron	ENST00000467345	ENST00000495145		TCGA	RV	HNSC	TCGA-CV-7091-01A	XPR1	chr1	180805852	+	TOR3A	chr1	179066963	+
In-frame	ENST00000294304	ENST00000294053		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
In-frame	ENST00000294304	ENST00000538039		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
In-frame	ENST00000294304	ENST00000437826		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
In-frame	ENST00000294304	ENST00000340729		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
In-frame	ENST00000294304	ENST00000543042		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
In-frame	ENST00000294304	ENST00000445069		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
5CDS-intron	ENST00000294304	ENST00000538021		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
5CDS-intron	ENST00000294304	ENST00000542555		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-3CDS	ENST00000529481	ENST00000294053		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-3CDS	ENST00000529481	ENST00000538039		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-3CDS	ENST00000529481	ENST00000437826		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-3CDS	ENST00000529481	ENST00000340729		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-3CDS	ENST00000529481	ENST00000543042		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-3CDS	ENST00000529481	ENST00000445069		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-intron	ENST00000529481	ENST00000538021		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
intron-intron	ENST00000529481	ENST00000542555		TCGA	RV	HNSC	TCGA-CV-7418-01A	LRP5	chr11	68080273	+	CLPB	chr11	72070052	-
5UTR-5UTR	ENST00000339514	ENST00000358470		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-5UTR	ENST00000339514	ENST00000392320		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-intron	ENST00000339514	ENST00000470708		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-5UTR	ENST00000339514	ENST00000409995		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-5UTR	ENST00000392318	ENST00000358470		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-5UTR	ENST00000392318	ENST00000392320		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-intron	ENST00000392318	ENST00000470708		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
5UTR-5UTR	ENST00000392318	ENST00000409995		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000304164	ENST00000358470		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000304164	ENST00000392320		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-intron	ENST00000304164	ENST00000470708		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000304164	ENST00000409995		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000392316	ENST00000358470		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000392316	ENST00000392320		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-intron	ENST00000392316	ENST00000470708		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000392316	ENST00000409995		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000439065	ENST00000358470		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000439065	ENST00000392320		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-intron	ENST00000439065	ENST00000470708		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000439065	ENST00000409995		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000496992	ENST00000358470		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000496992	ENST00000392320		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-intron	ENST00000496992	ENST00000470708		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
intron-5UTR	ENST00000496992	ENST00000409995		TCGA	RV	HNSC	TCGA-BA-4075-01A	MYO1B	chr2	192110352	+	STAT4	chr2	192012930	-
Frame-shit	ENST00000227638	ENST00000263468		TCGA	RV	HNSC	TCGA-CQ-6228-01A	PANX1	chr11	93886796	+	KIAA1377	chr11	101814996	+
5CDS-intron	ENST00000227638	ENST00000537689		TCGA	RV	HNSC	TCGA-CQ-6228-01A	PANX1	chr11	93886796	+	KIAA1377	chr11	101814996	+
Frame-shit	ENST00000436171	ENST00000263468		TCGA	RV	HNSC	TCGA-CQ-6228-01A	PANX1	chr11	93886796	+	KIAA1377	chr11	101814996	+
5CDS-intron	ENST00000436171	ENST00000537689		TCGA	RV	HNSC	TCGA-CQ-6228-01A	PANX1	chr11	93886796	+	KIAA1377	chr11	101814996	+
5CDS-intron	ENST00000429709	ENST00000418734		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000429709	ENST00000397676		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000429709	ENST00000445626		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000429709	ENST00000455059		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000429709	ENST00000463495		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000450518	ENST00000418734		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000450518	ENST00000397676		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000450518	ENST00000445626		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000450518	ENST00000455059		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000450518	ENST00000463495		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000392662	ENST00000418734		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000392662	ENST00000397676		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000392662	ENST00000445626		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000392662	ENST00000455059		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
5CDS-intron	ENST00000392662	ENST00000463495		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
intron-intron	ENST00000467615	ENST00000418734		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
intron-intron	ENST00000467615	ENST00000397676		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
intron-intron	ENST00000467615	ENST00000445626		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
intron-intron	ENST00000467615	ENST00000455059		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
intron-intron	ENST00000467615	ENST00000463495		TCGA	RV	HNSC	TCGA-CV-7103-01A	ACTL6A	chr3	179288029	+	ALG3	chr3	183963600	-
In-frame	ENST00000475805	ENST00000373017		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000475805	ENST00000470902		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000475805	ENST00000540948		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000475805	ENST00000277480		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000475805	ENST00000373013		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000475805	ENST00000372998		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
In-frame	ENST00000341179	ENST00000373017		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000341179	ENST00000470902		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000341179	ENST00000540948		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000341179	ENST00000277480		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000341179	ENST00000373013		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000341179	ENST00000372998		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
In-frame	ENST00000372923	ENST00000373017		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000372923	ENST00000470902		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000372923	ENST00000540948		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000372923	ENST00000277480		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000372923	ENST00000373013		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000372923	ENST00000372998		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
In-frame	ENST00000393594	ENST00000373017		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000393594	ENST00000470902		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000393594	ENST00000540948		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000393594	ENST00000277480		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000393594	ENST00000373013		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000393594	ENST00000372998		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
In-frame	ENST00000486160	ENST00000373017		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000486160	ENST00000470902		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000486160	ENST00000540948		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000486160	ENST00000277480		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000486160	ENST00000373013		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
5CDS-3UTR	ENST00000486160	ENST00000372998		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
intron-3CDS	ENST00000493925	ENST00000373017		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
intron-3UTR	ENST00000493925	ENST00000470902		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
intron-3UTR	ENST00000493925	ENST00000540948		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
intron-3UTR	ENST00000493925	ENST00000277480		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
intron-3UTR	ENST00000493925	ENST00000373013		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
intron-3UTR	ENST00000493925	ENST00000372998		TCGA	RV	HNSC	TCGA-CN-4723-01A	DNM1	chr9	130965910	+	LCN2	chr9	130913917	+
In-frame	ENST00000288986	ENST00000014930		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
5CDS-5UTR	ENST00000288986	ENST00000540916		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
5CDS-intron	ENST00000288986	ENST00000536942		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
In-frame	ENST00000481752	ENST00000014930		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
5CDS-5UTR	ENST00000481752	ENST00000540916		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
5CDS-intron	ENST00000481752	ENST00000536942		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
In-frame	ENST00000469404	ENST00000014930		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
5CDS-5UTR	ENST00000469404	ENST00000540916		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
5CDS-intron	ENST00000469404	ENST00000536942		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	NCK1	chr3	136665137	+	HEBP1	chr12	13128413	-
Frame-shit	ENST00000407775	ENST00000262219		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
In-frame	ENST00000407775	ENST00000419625		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
5CDS-intron	ENST00000407775	ENST00000519045		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
Frame-shit	ENST00000520492	ENST00000262219		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
In-frame	ENST00000520492	ENST00000419625		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
5CDS-intron	ENST00000520492	ENST00000519045		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
Frame-shit	ENST00000517361	ENST00000262219		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
In-frame	ENST00000517361	ENST00000419625		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
5CDS-intron	ENST00000517361	ENST00000519045		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
intron-3CDS	ENST00000522296	ENST00000262219		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
intron-3CDS	ENST00000522296	ENST00000419625		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
intron-intron	ENST00000522296	ENST00000519045		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
intron-3CDS	ENST00000378472	ENST00000262219		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
intron-3CDS	ENST00000378472	ENST00000419625		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
intron-intron	ENST00000378472	ENST00000519045		TCGA	RV	HNSC	TCGA-MZ-A5BI-01A	ZFPM2	chr8	106646585	+	ANXA13	chr8	124693599	-
5CDS-intron	ENST00000313949	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000313949	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000371098	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000371098	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371075	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371075	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371100	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371100	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000371099	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000371099	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371102	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371102	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000464624	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000464624	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000306120	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000306120	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371095	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371095	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371085	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371085	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000354359	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000354359	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000265620	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000265620	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000306090	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000306090	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000371081	ENST00000322349		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
intron-intron	ENST00000371081	ENST00000547833		TCGA	RV	HNSC	TCGA-CN-6010-01A	GNAS	chr20	57486241	+	EEA1	chr12	93229203	-
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	HNSC	TCGA-CR-7370-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	HNSC	TCGA-CR-7370-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-intron	ENST00000430629	ENST00000480033		TCGA	RV	HNSC	TCGA-CR-7370-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	HNSC	TCGA-CR-7370-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	HNSC	TCGA-CR-7370-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-intron	ENST00000536657	ENST00000480033		TCGA	RV	HNSC	TCGA-CR-7370-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
In-frame	ENST00000361354	ENST00000545260		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000545693		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000350537		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000346874		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000374789		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000374790		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000374794		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000361354	ENST00000374788		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000361354	ENST00000466092		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000361354	ENST00000374776		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000361354	ENST00000340077		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000361354	ENST00000544292		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000361354	ENST00000374773		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000361354	ENST00000374768		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000545260		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000545693		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000350537		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000346874		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000374789		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000374790		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000374794		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000360982	ENST00000374788		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000360982	ENST00000466092		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000360982	ENST00000374776		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000360982	ENST00000340077		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000360982	ENST00000544292		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000360982	ENST00000374773		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
5CDS-intron	ENST00000360982	ENST00000374768		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000545260		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000545693		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000350537		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000346874		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000374789		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000374790		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000374794		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-3CDS	ENST00000478449	ENST00000374788		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-intron	ENST00000478449	ENST00000466092		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-intron	ENST00000478449	ENST00000374776		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-intron	ENST00000478449	ENST00000340077		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-intron	ENST00000478449	ENST00000544292		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-intron	ENST00000478449	ENST00000374773		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
intron-intron	ENST00000478449	ENST00000374768		TCGA	RV	HNSC	TCGA-CN-4742-01A	NCKAP1	chr2	183888534	-	PARD3	chr10	34985347	-
In-frame	ENST00000378308	ENST00000595483		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	USP9X	chrX	41078484	+	BLVRB	chr19	40964452	-
In-frame	ENST00000378308	ENST00000263368		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	USP9X	chrX	41078484	+	BLVRB	chr19	40964452	-
In-frame	ENST00000324545	ENST00000595483		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	USP9X	chrX	41078484	+	BLVRB	chr19	40964452	-
In-frame	ENST00000324545	ENST00000263368		TCGA	RV	HNSC	TCGA-T2-A6WZ-01A	USP9X	chrX	41078484	+	BLVRB	chr19	40964452	-
In-frame	ENST00000455089	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000455089	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000455089	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000455089	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000455089	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-intron	ENST00000455089	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000342916	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000342916	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000342916	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000342916	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000342916	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-intron	ENST00000342916	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000344576	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000344576	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000344576	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000344576	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000344576	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-intron	ENST00000344576	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000420316	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000420316	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000420316	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000420316	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000420316	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-intron	ENST00000420316	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000275493	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000275493	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000275493	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000275493	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000275493	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-intron	ENST00000275493	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000442591	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000442591	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
In-frame	ENST00000442591	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000442591	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-5UTR	ENST00000442591	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5CDS-intron	ENST00000442591	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
3UTR-3CDS	ENST00000463948	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
3UTR-3CDS	ENST00000463948	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
3UTR-3CDS	ENST00000463948	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
3UTR-5UTR	ENST00000463948	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
3UTR-5UTR	ENST00000463948	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
3UTR-intron	ENST00000463948	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
intron-3CDS	ENST00000454757	ENST00000370841		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
intron-3CDS	ENST00000454757	ENST00000370834		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
intron-3CDS	ENST00000454757	ENST00000541113		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
intron-5UTR	ENST00000454757	ENST00000543667		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
intron-5UTR	ENST00000454757	ENST00000420607		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
intron-intron	ENST00000454757	ENST00000481374		TCGA	RV	HNSC	TCGA-CV-6941-01A	EGFR	chr7	55087058	+	ACADM	chr1	76198329	+
5UTR-3CDS	ENST00000340553	ENST00000327757		TCGA	RV	HNSC	TCGA-BA-7269-01A	FOXN2	chr2	48541953	+	PLB1	chr2	28863793	+
5UTR-3CDS	ENST00000340553	ENST00000422425		TCGA	RV	HNSC	TCGA-BA-7269-01A	FOXN2	chr2	48541953	+	PLB1	chr2	28863793	+
5UTR-3CDS	ENST00000340553	ENST00000541605		TCGA	RV	HNSC	TCGA-BA-7269-01A	FOXN2	chr2	48541953	+	PLB1	chr2	28863793	+
5UTR-intron	ENST00000340553	ENST00000329020		TCGA	RV	HNSC	TCGA-BA-7269-01A	FOXN2	chr2	48541953	+	PLB1	chr2	28863793	+
Frame-shit	ENST00000341426	ENST00000378609		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
5CDS-intron	ENST00000341426	ENST00000472614		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
In-frame	ENST00000341991	ENST00000378609		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
5CDS-intron	ENST00000341991	ENST00000472614		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
intron-3CDS	ENST00000378625	ENST00000378609		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
intron-intron	ENST00000378625	ENST00000472614		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
intron-3CDS	ENST00000344463	ENST00000378609		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
intron-intron	ENST00000344463	ENST00000472614		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
5UTR-3CDS	ENST00000492768	ENST00000378609		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
5UTR-intron	ENST00000492768	ENST00000472614		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
In-frame	ENST00000342348	ENST00000378609		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
5CDS-intron	ENST00000342348	ENST00000472614		TCGA	RV	HNSC	TCGA-DQ-7591-01A	NADK	chr1	1688620	-	GNB1	chr1	1720708	-
In-frame	ENST00000283243	ENST00000283249		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000283243	ENST00000485635		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000283243	ENST00000428609		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000283243	ENST00000409967		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000283243	ENST00000409872		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
In-frame	ENST00000392771	ENST00000283249		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000392771	ENST00000485635		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000392771	ENST00000428609		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000392771	ENST00000409967		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000392771	ENST00000409872		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
intron-3CDS	ENST00000460710	ENST00000283249		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000460710	ENST00000485635		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000460710	ENST00000428609		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000460710	ENST00000409967		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000460710	ENST00000409872		TCGA	RV	HNSC	TCGA-CR-7370-01A	PLA2R1	chr2	160832579	-	ITGB6	chr2	160998582	-
5CDS-intron	ENST00000211998	ENST00000535742		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-3UTR	ENST00000211998	ENST00000546025		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-3UTR	ENST00000211998	ENST00000345254		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000211998	ENST00000540668		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000211998	ENST00000339365		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000211998	ENST00000411652		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000211998	ENST00000496827		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000372755	ENST00000535742		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-3UTR	ENST00000372755	ENST00000546025		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-3UTR	ENST00000372755	ENST00000345254		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000372755	ENST00000540668		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000372755	ENST00000339365		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000372755	ENST00000411652		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000372755	ENST00000496827		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-intron	ENST00000478896	ENST00000535742		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-3UTR	ENST00000478896	ENST00000546025		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-3UTR	ENST00000478896	ENST00000345254		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-intron	ENST00000478896	ENST00000540668		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-intron	ENST00000478896	ENST00000339365		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-intron	ENST00000478896	ENST00000411652		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
3UTR-intron	ENST00000478896	ENST00000496827		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000417648	ENST00000535742		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-3UTR	ENST00000417648	ENST00000546025		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-3UTR	ENST00000417648	ENST00000345254		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000417648	ENST00000540668		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000417648	ENST00000339365		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000417648	ENST00000411652		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
5CDS-intron	ENST00000417648	ENST00000496827		TCGA	RV	HNSC	TCGA-CR-7402-01A	VCL	chr10	75802911	+	SEC24C	chr10	75526518	+
In-frame	ENST00000443572	ENST00000262291		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000443572	ENST00000537567		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000443572	ENST00000539763		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000443572	ENST00000536180		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000443572	ENST00000545362		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000443572	ENST00000588617		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000406116	ENST00000262291		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000406116	ENST00000537567		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000406116	ENST00000539763		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000406116	ENST00000536180		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000406116	ENST00000545362		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000406116	ENST00000588617		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000225577	ENST00000262291		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000225577	ENST00000537567		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000225577	ENST00000539763		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000225577	ENST00000536180		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000225577	ENST00000545362		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000225577	ENST00000588617		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000393021	ENST00000262291		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000393021	ENST00000537567		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000393021	ENST00000539763		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000393021	ENST00000536180		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
In-frame	ENST00000393021	ENST00000545362		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
5CDS-intron	ENST00000393021	ENST00000588617		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000587061	ENST00000262291		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000587061	ENST00000537567		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000587061	ENST00000539763		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000587061	ENST00000536180		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
intron-3CDS	ENST00000587061	ENST00000545362		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
intron-intron	ENST00000587061	ENST00000588617		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	RPS6KB1	chr17	57990165	+	VMP1	chr17	57886157	+
5UTR-3CDS	ENST00000265565	ENST00000254480		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
5UTR-5UTR	ENST00000265565	ENST00000425518		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
5UTR-3CDS	ENST00000441517	ENST00000254480		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
5UTR-5UTR	ENST00000441517	ENST00000425518		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
5UTR-3CDS	ENST00000545718	ENST00000254480		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
5UTR-5UTR	ENST00000545718	ENST00000425518		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
intron-3CDS	ENST00000465628	ENST00000254480		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
intron-5UTR	ENST00000465628	ENST00000425518		TCGA	RV	HNSC	TCGA-CV-6962-01A	SCAP	chr3	47517289	-	SMARCC1	chr3	47712207	-
In-frame	ENST00000261745	ENST00000555449		TCGA	RV	HNSC	TCGA-CV-6940-01A	NAA25	chr12	112525487	-	SLC25A21	chr14	37154130	-
In-frame	ENST00000261745	ENST00000331299		TCGA	RV	HNSC	TCGA-CV-6940-01A	NAA25	chr12	112525487	-	SLC25A21	chr14	37154130	-
5CDS-intron	ENST00000261745	ENST00000557611		TCGA	RV	HNSC	TCGA-CV-6940-01A	NAA25	chr12	112525487	-	SLC25A21	chr14	37154130	-
5CDS-5UTR	ENST00000339276	ENST00000228741		TCGA	RV	HNSC	TCGA-F7-A623-01A	SFN	chr1	27190947	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000339276	ENST00000552142		TCGA	RV	HNSC	TCGA-F7-A623-01A	SFN	chr1	27190947	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000339276	ENST00000549529		TCGA	RV	HNSC	TCGA-F7-A623-01A	SFN	chr1	27190947	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000382564	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000382564	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000382564	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000382564	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000382564	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000486355	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000486355	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000486355	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000486355	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000486355	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000491873	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000491873	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000491873	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000491873	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000491873	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000479269	ENST00000539909		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000479269	ENST00000286621		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000479269	ENST00000372734		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000479269	ENST00000541550		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
5CDS-intron	ENST00000479269	ENST00000467840		TCGA	RV	HNSC	TCGA-CV-7103-01A	DNAJC19	chr3	180705811	-	ADK	chr10	76285014	+
In-frame	ENST00000303575	ENST00000557636		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000303575	ENST00000286650		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000303575	ENST00000298832		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000303575	ENST00000556893		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000303575	ENST00000554510		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000303575	ENST00000556977		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-intron	ENST00000303575	ENST00000555422		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-3CDS	ENST00000557670	ENST00000557636		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000557670	ENST00000286650		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000557670	ENST00000298832		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000557670	ENST00000556893		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000557670	ENST00000554510		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000557670	ENST00000556977		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
intron-intron	ENST00000557670	ENST00000555422		TCGA	RV	HNSC	TCGA-CV-6961-01A	TMED10	chr14	75643058	-	TTLL5	chr14	76286350	+
5CDS-3UTR	ENST00000458477	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-intron	ENST00000458477	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-3UTR	ENST00000228307	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-intron	ENST00000228307	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-3UTR	ENST00000424649	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-intron	ENST00000424649	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
intron-3UTR	ENST00000397506	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
intron-intron	ENST00000397506	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-3UTR	ENST00000536957	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-intron	ENST00000536957	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-3UTR	ENST00000267257	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5CDS-intron	ENST00000267257	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5UTR-3UTR	ENST00000538144	ENST00000257552		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
5UTR-intron	ENST00000538144	ENST00000546622		TCGA	RV	HNSC	TCGA-CV-7253-01A	PXN	chr12	120659426	-	MSI1	chr12	120780908	-
In-frame	ENST00000519728	ENST00000394480		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000557856		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000357724		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000355254		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000360948		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000542733		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000558676		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519728	ENST00000317501		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000519728	ENST00000558306		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000519728	ENST00000540489		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000394480		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000557856		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000357724		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000355254		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000360948		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000542733		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000558676		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520220	ENST00000317501		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000520220	ENST00000558306		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000520220	ENST00000540489		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000394480		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000557856		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000357724		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000355254		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000360948		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000542733		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000558676		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000420292	ENST00000317501		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000420292	ENST00000558306		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000420292	ENST00000540489		TCGA	RV	HNSC	TCGA-CN-6997-01A	LYN	chr8	56866543	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000357575	ENST00000451882		TCGA	RV	HNSC	TCGA-CV-7434-01A	PQLC1	chr18	77703329	-	HSBP1L1	chr18	77726612	+
Frame-shit	ENST00000397778	ENST00000451882		TCGA	RV	HNSC	TCGA-CV-7434-01A	PQLC1	chr18	77703329	-	HSBP1L1	chr18	77726612	+
Frame-shit	ENST00000409073	ENST00000451882		TCGA	RV	HNSC	TCGA-CV-7434-01A	PQLC1	chr18	77703329	-	HSBP1L1	chr18	77726612	+
Frame-shit	ENST00000590381	ENST00000451882		TCGA	RV	HNSC	TCGA-CV-7434-01A	PQLC1	chr18	77703329	-	HSBP1L1	chr18	77726612	+
intron-3CDS	ENST00000590895	ENST00000451882		TCGA	RV	HNSC	TCGA-CV-7434-01A	PQLC1	chr18	77703329	-	HSBP1L1	chr18	77726612	+
5CDS-5UTR	ENST00000452825	ENST00000342160		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000452825	ENST00000262854		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-intron	ENST00000452825	ENST00000474288		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000452825	ENST00000218328		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375401	ENST00000342160		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375401	ENST00000262854		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-intron	ENST00000375401	ENST00000474288		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375401	ENST00000218328		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000404049	ENST00000342160		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000404049	ENST00000262854		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-intron	ENST00000404049	ENST00000474288		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000404049	ENST00000218328		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375379	ENST00000342160		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375379	ENST00000262854		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-intron	ENST00000375379	ENST00000474288		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375379	ENST00000218328		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375383	ENST00000342160		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375383	ENST00000262854		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-intron	ENST00000375383	ENST00000474288		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
5CDS-5UTR	ENST00000375383	ENST00000218328		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
intron-5UTR	ENST00000465402	ENST00000342160		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
intron-5UTR	ENST00000465402	ENST00000262854		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
intron-intron	ENST00000465402	ENST00000474288		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
intron-5UTR	ENST00000465402	ENST00000218328		TCGA	RV	HNSC	TCGA-KU-A66T-01A	KDM5C	chrX	53245256	-	HUWE1	chrX	53707139	-
In-frame	ENST00000450904	ENST00000449833		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
In-frame	ENST00000450904	ENST00000409161		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000450904	ENST00000423696		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000450904	ENST00000338508		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000450904	ENST00000409530		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000450904	ENST00000449116		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000450904	ENST00000357171		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000450904	ENST00000468619		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000362034	ENST00000449833		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
Frame-shit	ENST00000362034	ENST00000409161		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
In-frame	ENST00000362034	ENST00000423696		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
In-frame	ENST00000362034	ENST00000338508		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000362034	ENST00000409530		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000362034	ENST00000449116		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000362034	ENST00000357171		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
5CDS-intron	ENST00000362034	ENST00000468619		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000567045	ENST00000449833		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000567045	ENST00000409161		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000567045	ENST00000423696		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-3CDS	ENST00000567045	ENST00000338508		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000567045	ENST00000409530		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000567045	ENST00000449116		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000567045	ENST00000357171		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
intron-intron	ENST00000567045	ENST00000468619		TCGA	RV	HNSC	TCGA-F7-7848-01A	MRPL21	chr11	68660358	-	SHANK2	chr11	70319544	-
In-frame	ENST00000014930	ENST00000288986		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
In-frame	ENST00000014930	ENST00000481752		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
Frame-shit	ENST00000014930	ENST00000469404		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
intron-3CDS	ENST00000540916	ENST00000288986		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
intron-3CDS	ENST00000540916	ENST00000481752		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
intron-3CDS	ENST00000540916	ENST00000469404		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
intron-3CDS	ENST00000536942	ENST00000288986		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
intron-3CDS	ENST00000536942	ENST00000481752		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
intron-3CDS	ENST00000536942	ENST00000469404		TCGA	RV	HNSC	TCGA-QK-A8ZB-01A	HEBP1	chr12	13140086	-	NCK1	chr3	136667101	+
5CDS-5UTR	ENST00000367157	ENST00000476884		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367157	ENST00000367153		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367157	ENST00000367154		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367157	ENST00000391936		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367157	ENST00000367149		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367157	ENST00000367151		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367157	ENST00000367152		TCGA	RV	HNSC	TCGA-BA-6871-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205389702	-
Frame-shit	ENST00000393537	ENST00000327896		TCGA	RV	HNSC	TCGA-CR-6478-01A	ANKRD39	chr2	97523625	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000393537	ENST00000417561		TCGA	RV	HNSC	TCGA-CR-6478-01A	ANKRD39	chr2	97523625	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000393537	ENST00000490605		TCGA	RV	HNSC	TCGA-CR-6478-01A	ANKRD39	chr2	97523625	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000393537	ENST00000393526		TCGA	RV	HNSC	TCGA-CR-6478-01A	ANKRD39	chr2	97523625	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000393537	ENST00000470789		TCGA	RV	HNSC	TCGA-CR-6478-01A	ANKRD39	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000544301	ENST00000322349		TCGA	RV	HNSC	TCGA-D6-6826-01A	VIM	chr10	17279592	+	EEA1	chr12	93229203	-
intron-intron	ENST00000544301	ENST00000547833		TCGA	RV	HNSC	TCGA-D6-6826-01A	VIM	chr10	17279592	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000224237	ENST00000322349		TCGA	RV	HNSC	TCGA-D6-6826-01A	VIM	chr10	17279592	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000224237	ENST00000547833		TCGA	RV	HNSC	TCGA-D6-6826-01A	VIM	chr10	17279592	+	EEA1	chr12	93229203	-
intron-intron	ENST00000485947	ENST00000322349		TCGA	RV	HNSC	TCGA-D6-6826-01A	VIM	chr10	17279592	+	EEA1	chr12	93229203	-
intron-intron	ENST00000485947	ENST00000547833		TCGA	RV	HNSC	TCGA-D6-6826-01A	VIM	chr10	17279592	+	EEA1	chr12	93229203	-
intron-3CDS	ENST00000368708	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-5978-01A	S100A2	chr1	153533819	-	CXCR5	chr11	118754475	+
Frame-shit	ENST00000487430	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-5978-01A	S100A2	chr1	153533819	-	CXCR5	chr11	118754475	+
In-frame	ENST00000497140	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-5978-01A	S100A2	chr1	153533819	-	CXCR5	chr11	118754475	+
In-frame	ENST00000368710	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-5978-01A	S100A2	chr1	153533819	-	CXCR5	chr11	118754475	+
Frame-shit	ENST00000368709	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-5978-01A	S100A2	chr1	153533819	-	CXCR5	chr11	118754475	+
In-frame	ENST00000368707	ENST00000292174		TCGA	RV	HNSC	TCGA-CV-5978-01A	S100A2	chr1	153533819	-	CXCR5	chr11	118754475	+
5CDS-3UTR	ENST00000271069	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000271069	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000271069	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000271069	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000271069	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000373672	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000373672	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000373672	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000373672	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000373672	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000461217	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000461217	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000461217	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000461217	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000461217	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000373668	ENST00000435070		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000373668	ENST00000456847		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-3UTR	ENST00000373668	ENST00000266679		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-intron	ENST00000373668	ENST00000550987		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
intron-intron	ENST00000373668	ENST00000551516		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	COL16A1	chr1	32119200	-	CPSF6	chr12	69663292	+
Frame-shit	ENST00000426333	ENST00000264651		TCGA	RV	HNSC	TCGA-CN-5370-01A	EFTUD2	chr17	42956924	-	KRT24	chr17	38858185	-
Frame-shit	ENST00000592576	ENST00000264651		TCGA	RV	HNSC	TCGA-CN-5370-01A	EFTUD2	chr17	42956924	-	KRT24	chr17	38858185	-
In-frame	ENST00000591382	ENST00000264651		TCGA	RV	HNSC	TCGA-CN-5370-01A	EFTUD2	chr17	42956924	-	KRT24	chr17	38858185	-
In-frame	ENST00000402521	ENST00000264651		TCGA	RV	HNSC	TCGA-CN-5370-01A	EFTUD2	chr17	42956924	-	KRT24	chr17	38858185	-
intron-3CDS	ENST00000589211	ENST00000264651		TCGA	RV	HNSC	TCGA-CN-5370-01A	EFTUD2	chr17	42956924	-	KRT24	chr17	38858185	-
Frame-shit	ENST00000377182	ENST00000276585		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
In-frame	ENST00000377182	ENST00000521434		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
Frame-shit	ENST00000377182	ENST00000521605		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
5CDS-intron	ENST00000377182	ENST00000522987		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000460688	ENST00000276585		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000460688	ENST00000521434		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000460688	ENST00000521605		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
intron-intron	ENST00000460688	ENST00000522987		TCGA	RV	HNSC	TCGA-BA-6868-01B	MAMDC2	chr9	72746528	+	MRPS28	chr8	80831383	-
In-frame	ENST00000292363	ENST00000329267		TCGA	RV	HNSC	TCGA-CN-A6V6-01A	RNF126	chr19	649679	-	PRSS57	chr19	687188	-
In-frame	ENST00000374864	ENST00000253381		TCGA	RV	HNSC	TCGA-CV-5443-01A	ITCH	chr20	33059320	+	DEFB118	chr20	29960660	+
In-frame	ENST00000535650	ENST00000253381		TCGA	RV	HNSC	TCGA-CV-5443-01A	ITCH	chr20	33059320	+	DEFB118	chr20	29960660	+
In-frame	ENST00000262650	ENST00000253381		TCGA	RV	HNSC	TCGA-CV-5443-01A	ITCH	chr20	33059320	+	DEFB118	chr20	29960660	+
3UTR-3CDS	ENST00000483727	ENST00000253381		TCGA	RV	HNSC	TCGA-CV-5443-01A	ITCH	chr20	33059320	+	DEFB118	chr20	29960660	+
In-frame	ENST00000309955	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000309955	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000309955	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000443227	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000443227	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000443227	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000341222	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000341222	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000341222	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000340870	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000340870	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000340870	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000355558	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000355558	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000355558	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000341582	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000341582	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000341582	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000342795	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000342795	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000342795	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000395148	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000395148	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000395148	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000423241	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000423241	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000423241	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000440180	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000440180	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000440180	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000457277	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000457277	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000457277	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000494258	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000494258	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000494258	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000479953	ENST00000237889		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000479953	ENST00000433898		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000479953	ENST00000454214		TCGA	RV	HNSC	TCGA-P3-A6T4-01A	CFLAR	chr2	202005162	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000332149	ENST00000291560		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
Frame-shit	ENST00000332149	ENST00000542962		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
Frame-shit	ENST00000398585	ENST00000291560		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
Frame-shit	ENST00000398585	ENST00000542962		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
In-frame	ENST00000458356	ENST00000291560		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
Frame-shit	ENST00000458356	ENST00000542962		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
intron-3CDS	ENST00000497881	ENST00000291560		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
intron-3CDS	ENST00000497881	ENST00000542962		TCGA	RV	HNSC	TCGA-P3-A6T8-01A	TMPRSS2	chr21	42843733	-	HSF2BP	chr21	44949842	-
In-frame	ENST00000392411	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000392411	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000392411	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000392411	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000321280	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000321280	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000321280	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000321280	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000428708	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000428708	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000428708	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000428708	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000575712	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000575712	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000575712	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000575712	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000575245	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000575245	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000575245	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000575245	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000435091	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000435091	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000435091	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000435091	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000321300	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000321300	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000321300	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
5CDS-intron	ENST00000321300	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
3UTR-3CDS	ENST00000573894	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
3UTR-3CDS	ENST00000573894	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
3UTR-3CDS	ENST00000573894	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
3UTR-intron	ENST00000573894	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
intron-3CDS	ENST00000416299	ENST00000355528		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
intron-3CDS	ENST00000416299	ENST00000397466		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
intron-3CDS	ENST00000416299	ENST00000539345		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
intron-intron	ENST00000416299	ENST00000576691		TCGA	RV	HNSC	TCGA-BA-6871-01A	BAIAP2	chr17	79060380	+	TBCD	chr17	80847544	+
In-frame	ENST00000381809	ENST00000381750		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381809	ENST00000381730		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381809	ENST00000381728		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381809	ENST00000448872		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381809	ENST00000381732		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381809	ENST00000445485		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
Frame-shit	ENST00000359883	ENST00000381750		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000359883	ENST00000381730		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000359883	ENST00000381728		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000359883	ENST00000448872		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000359883	ENST00000381732		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000359883	ENST00000445485		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
intron-3CDS	ENST00000447596	ENST00000381750		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
intron-intron	ENST00000447596	ENST00000381730		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
intron-intron	ENST00000447596	ENST00000381728		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
intron-intron	ENST00000447596	ENST00000448872		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
intron-intron	ENST00000447596	ENST00000381732		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
intron-intron	ENST00000447596	ENST00000445485		TCGA	RV	HNSC	TCGA-CR-7399-01A	AK3	chr9	4722506	-	RCL1	chr9	4823548	+
In-frame	ENST00000262455	ENST00000263671		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ERP44	chr9	102814699	-	CHRDL2	chr11	74429877	-
In-frame	ENST00000262455	ENST00000376332		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ERP44	chr9	102814699	-	CHRDL2	chr11	74429877	-
5CDS-5UTR	ENST00000262455	ENST00000534159		TCGA	RV	HNSC	TCGA-DQ-5624-01A	ERP44	chr9	102814699	-	CHRDL2	chr11	74429877	-
3UTR-3CDS	ENST00000435070	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000435070	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000435070	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000435070	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000456847	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000456847	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000456847	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000456847	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000266679	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000266679	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000266679	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000266679	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-3CDS	ENST00000550987	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-3CDS	ENST00000550987	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-intron	ENST00000550987	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-intron	ENST00000550987	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
In-frame	ENST00000551516	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
Frame-shit	ENST00000551516	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
5CDS-intron	ENST00000551516	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
5CDS-intron	ENST00000551516	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-01A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-3CDS	ENST00000368708	ENST00000454903		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000406242		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000604404		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000435734		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000603181		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000604255		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000346446		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000344013		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000603449		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000406988		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000605550		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000604804		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000605552		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000535103		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000603524		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000604621		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
intron-3CDS	ENST00000368708	ENST00000605677		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000454903		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000406242		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000604404		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000435734		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000603181		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000604255		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000346446		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000344013		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000603449		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000406988		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000605550		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000604804		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000487430	ENST00000605552		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000535103		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000603524		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000604621		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000487430	ENST00000605677		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000497140	ENST00000454903		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000406242		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000604404		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000435734		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000603181		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000604255		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000346446		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000344013		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000497140	ENST00000603449		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000406988		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000605550		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000604804		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000497140	ENST00000605552		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000535103		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000603524		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000604621		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000497140	ENST00000605677		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368710	ENST00000454903		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000406242		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000604404		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000435734		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000603181		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000604255		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000346446		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000344013		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368710	ENST00000603449		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000406988		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000605550		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000604804		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368710	ENST00000605552		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000535103		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000603524		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000604621		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368710	ENST00000605677		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000454903		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000406242		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000604404		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000435734		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000603181		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000604255		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000346446		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000344013		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000603449		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000406988		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000605550		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000604804		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368709	ENST00000605552		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000535103		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000603524		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000604621		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368709	ENST00000605677		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368707	ENST00000454903		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000406242		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000604404		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000435734		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000603181		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000604255		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000346446		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000344013		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368707	ENST00000603449		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000406988		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000605550		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000604804		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
Frame-shit	ENST00000368707	ENST00000605552		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000535103		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000603524		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000604621		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000368707	ENST00000605677		TCGA	RV	HNSC	TCGA-D6-A4ZB-01A	S100A2	chr1	153533819	-	FXYD3	chr19	35612126	+
In-frame	ENST00000581396	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000581396	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000581396	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000379504	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000379504	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000379504	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000318094	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000318094	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000318094	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000395739	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000395739	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000395739	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000535933	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000535933	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000535933	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000540946	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000540946	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000540946	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000542206	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
In-frame	ENST00000542206	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
5CDS-5UTR	ENST00000542206	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-3CDS	ENST00000478943	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-3CDS	ENST00000478943	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-5UTR	ENST00000478943	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-3CDS	ENST00000577517	ENST00000585101		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-3CDS	ENST00000577517	ENST00000474627		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-5UTR	ENST00000577517	ENST00000469327		TCGA	RV	HNSC	TCGA-CV-7253-01A	TOM1L2	chr17	17810761	-	ATPAF2	chr17	17928018	-
intron-3CDS	ENST00000534797	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000534797	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000534797	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000534797	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000534797	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-5UTR	ENST00000534797	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397614	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397614	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397614	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397614	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397614	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-5UTR	ENST00000397614	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397615	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397615	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397615	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397615	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000397615	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-5UTR	ENST00000397615	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000397604	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000397604	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000397604	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000397604	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000397604	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-5UTR	ENST00000397604	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000533410	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000533410	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000533410	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000533410	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000533410	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-5UTR	ENST00000533410	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000438658	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000438658	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000438658	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000438658	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000438658	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-5UTR	ENST00000438658	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000354420	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000354420	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000354420	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000354420	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000354420	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-5UTR	ENST00000354420	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000356187	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000356187	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000356187	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000356187	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-3CDS	ENST00000356187	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5UTR-5UTR	ENST00000356187	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000533592	ENST00000397594		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000533592	ENST00000397596		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000533592	ENST00000451590		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000533592	ENST00000417302		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-3CDS	ENST00000533592	ENST00000311189		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
intron-5UTR	ENST00000533592	ENST00000468682		TCGA	RV	HNSC	TCGA-CR-7382-01A	RNH1	chr11	507113	-	HRAS	chr11	533944	-
5CDS-intron	ENST00000337225	ENST00000216297		TCGA	RV	HNSC	TCGA-CV-5441-01A	CXCL14	chr5	134906376	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000337225	ENST00000555943		TCGA	RV	HNSC	TCGA-CV-5441-01A	CXCL14	chr5	134906376	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000512158	ENST00000216297		TCGA	RV	HNSC	TCGA-CV-5441-01A	CXCL14	chr5	134906376	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000512158	ENST00000555943		TCGA	RV	HNSC	TCGA-CV-5441-01A	CXCL14	chr5	134906376	-	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000251808	ENST00000324989		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
Frame-shit	ENST00000251808	ENST00000397890		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5CDS-5UTR	ENST00000251808	ENST00000511535		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5CDS-5UTR	ENST00000251808	ENST00000512574		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5UTR-3CDS	ENST00000395927	ENST00000324989		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5UTR-3CDS	ENST00000395927	ENST00000397890		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5UTR-5UTR	ENST00000395927	ENST00000511535		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5UTR-5UTR	ENST00000395927	ENST00000512574		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
intron-3CDS	ENST00000517674	ENST00000324989		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
intron-3CDS	ENST00000517674	ENST00000397890		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
intron-5UTR	ENST00000517674	ENST00000511535		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
intron-5UTR	ENST00000517674	ENST00000512574		TCGA	RV	HNSC	TCGA-IQ-A61H-01A	GRHL2	chr8	102505017	+	CRMP1	chr4	5830395	-
5CDS-5UTR	ENST00000381809	ENST00000417746		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000381809	ENST00000456383		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000381809	ENST00000381434		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-intron	ENST00000381809	ENST00000463336		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
intron-5UTR	ENST00000359883	ENST00000417746		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
intron-5UTR	ENST00000359883	ENST00000456383		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
intron-5UTR	ENST00000359883	ENST00000381434		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
intron-intron	ENST00000359883	ENST00000463336		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000447596	ENST00000417746		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000447596	ENST00000456383		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-5UTR	ENST00000447596	ENST00000381434		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
5CDS-intron	ENST00000447596	ENST00000463336		TCGA	RV	HNSC	TCGA-C9-A47Z-01A	AK3	chr9	4740937	-	IL33	chr9	6241684	+
In-frame	ENST00000261965	ENST00000375370		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000261965	ENST00000538138		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000261965	ENST00000465174		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000261965	ENST00000544902		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
In-frame	ENST00000375669	ENST00000375370		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375669	ENST00000538138		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000375669	ENST00000465174		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375669	ENST00000544902		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
intron-3CDS	ENST00000462580	ENST00000375370		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000462580	ENST00000538138		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
intron-3UTR	ENST00000462580	ENST00000465174		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000462580	ENST00000544902		TCGA	RV	HNSC	TCGA-CV-7416-01A	TUBGCP3	chr13	113219425	-	TFDP1	chr13	114265311	+
5UTR-3CDS	ENST00000508803	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
5UTR-intron	ENST00000508803	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000382892	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000382892	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000382891	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000382891	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000382895	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000382895	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000482415	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000482415	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000382888	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000382888	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
5UTR-3CDS	ENST00000514045	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
5UTR-intron	ENST00000514045	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000436793	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000436793	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000420906	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000420906	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000503128	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000503128	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-3CDS	ENST00000398261	ENST00000326291		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
intron-intron	ENST00000398261	ENST00000489922		TCGA	RV	HNSC	TCGA-HD-7753-01A	WHSC1	chr4	1873269	+	PIBF1	chr13	73539412	+
In-frame	ENST00000393561	ENST00000356362		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
In-frame	ENST00000393561	ENST00000469408		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
Frame-shit	ENST00000222399	ENST00000356362		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
Frame-shit	ENST00000222399	ENST00000469408		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
Frame-shit	ENST00000393560	ENST00000356362		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
Frame-shit	ENST00000393560	ENST00000469408		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
intron-3CDS	ENST00000474380	ENST00000356362		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
intron-3CDS	ENST00000474380	ENST00000469408		TCGA	RV	HNSC	TCGA-BA-6868-01B	LAMB1	chr7	107626467	-	PUS7	chr7	105098373	-
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	HNSC	TCGA-CN-6988-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
In-frame	ENST00000255681	ENST00000257264		TCGA	RV	HNSC	TCGA-CN-A49C-01A	MACROD1	chr11	63918711	-	TCN1	chr11	59622308	-
5CDS-5UTR	ENST00000255681	ENST00000532419		TCGA	RV	HNSC	TCGA-CN-A49C-01A	MACROD1	chr11	63918711	-	TCN1	chr11	59622308	-
5UTR-3CDS	ENST00000538595	ENST00000257264		TCGA	RV	HNSC	TCGA-CN-A49C-01A	MACROD1	chr11	63918711	-	TCN1	chr11	59622308	-
5UTR-5UTR	ENST00000538595	ENST00000532419		TCGA	RV	HNSC	TCGA-CN-A49C-01A	MACROD1	chr11	63918711	-	TCN1	chr11	59622308	-
intron-intron	ENST00000368708	ENST00000284049		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
intron-intron	ENST00000368708	ENST00000511067		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000487430	ENST00000284049		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000487430	ENST00000511067		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000497140	ENST00000284049		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000497140	ENST00000511067		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000368710	ENST00000284049		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000368710	ENST00000511067		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000368709	ENST00000284049		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000368709	ENST00000511067		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000368707	ENST00000284049		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000368707	ENST00000511067		TCGA	RV	HNSC	TCGA-CR-7373-01A	S100A2	chr1	153533819	-	CHD1	chr5	98219587	-
Frame-shit	ENST00000262033	ENST00000454682		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000550952		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000356769		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000552540		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000393891		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000262033	ENST00000548563		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000262033	ENST00000546392		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000262033	ENST00000551793		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000454682		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000550952		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000356769		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000552540		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000393891		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-5UTR	ENST00000537473	ENST00000548563		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-5UTR	ENST00000537473	ENST00000546392		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-5UTR	ENST00000537473	ENST00000551793		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000454682		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000550952		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000356769		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000552540		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000393891		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000414274	ENST00000548563		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000414274	ENST00000546392		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000414274	ENST00000551793		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000454682		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000550952		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000356769		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000552540		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000393891		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000436399	ENST00000548563		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000436399	ENST00000546392		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000436399	ENST00000551793		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000454682		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000550952		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000356769		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000552540		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000393891		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000448157	ENST00000548563		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000448157	ENST00000546392		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000448157	ENST00000551793		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000454682		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000550952		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000356769		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000552540		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000393891		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000456859	ENST00000548563		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000456859	ENST00000546392		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000456859	ENST00000551793		TCGA	RV	HNSC	TCGA-HD-7832-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
In-frame	ENST00000371269	ENST00000258229		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000371269	ENST00000344698		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000371269	ENST00000488780		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000371269	ENST00000520463		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000371269	ENST00000430153		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
Frame-shit	ENST00000537443	ENST00000258229		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000537443	ENST00000344698		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000537443	ENST00000488780		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000537443	ENST00000520463		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000537443	ENST00000430153		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
In-frame	ENST00000535035	ENST00000258229		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000535035	ENST00000344698		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000535035	ENST00000488780		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000535035	ENST00000520463		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
5CDS-intron	ENST00000535035	ENST00000430153		TCGA	RV	HNSC	TCGA-CV-7253-01A	DHCR24	chr1	55319710	-	PCNXL2	chr1	233314921	-
Frame-shit	ENST00000318562	ENST00000371694		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000318562	ENST00000371696		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000318562	ENST00000538402		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000533256	ENST00000371694		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000533256	ENST00000371696		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000533256	ENST00000538402		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000530636	ENST00000371694		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000530636	ENST00000371696		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000530636	ENST00000538402		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000526198	ENST00000371694		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000526198	ENST00000371696		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
Frame-shit	ENST00000526198	ENST00000538402		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
intron-3CDS	ENST00000534449	ENST00000371694		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
intron-3CDS	ENST00000534449	ENST00000371696		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
intron-3CDS	ENST00000534449	ENST00000538402		TCGA	RV	HNSC	TCGA-CQ-5333-01A	EPS8L2	chr11	709608	+	AGPAT2	chr9	139569259	-
5CDS-intron	ENST00000441802	ENST00000454703		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000515030		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000281455		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000507295		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000437665		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000504342		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000504900		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
5CDS-5UTR	ENST00000441802	ENST00000513317		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-intron	ENST00000512347	ENST00000454703		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000515030		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000281455		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000507295		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000437665		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000504342		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000504900		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
intron-5UTR	ENST00000512347	ENST00000513317		TCGA	RV	HNSC	TCGA-CN-4722-01A	FAT1	chr4	187627717	-	ACSL1	chr4	185724700	-
In-frame	ENST00000441802	ENST00000458385		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
5CDS-intron	ENST00000441802	ENST00000514798		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
5CDS-intron	ENST00000441802	ENST00000296775		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
5CDS-intron	ENST00000441802	ENST00000502992		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
intron-3CDS	ENST00000512347	ENST00000458385		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
intron-intron	ENST00000512347	ENST00000514798		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
intron-intron	ENST00000512347	ENST00000296775		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
intron-intron	ENST00000512347	ENST00000502992		TCGA	RV	HNSC	TCGA-DQ-7588-01A	FAT1	chr4	187554838	-	KIAA1430	chr4	186085333	-
3UTR-3CDS	ENST00000435070	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000435070	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000435070	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000435070	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000456847	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000456847	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000456847	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000456847	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000266679	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-3CDS	ENST00000266679	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000266679	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
3UTR-intron	ENST00000266679	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-3CDS	ENST00000550987	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-3CDS	ENST00000550987	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-intron	ENST00000550987	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
intron-intron	ENST00000550987	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
In-frame	ENST00000551516	ENST00000271069		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
Frame-shit	ENST00000551516	ENST00000373672		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
5CDS-intron	ENST00000551516	ENST00000461217		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
5CDS-intron	ENST00000551516	ENST00000373668		TCGA	RV	HNSC	TCGA-KU-A6H7-06A	CPSF6	chr12	69656342	+	COL16A1	chr1	32118454	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	HNSC	TCGA-CR-6473-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1739325	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	HNSC	TCGA-CV-7100-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
Frame-shit	ENST00000260356	ENST00000441037		TCGA	RV	HNSC	TCGA-CV-6960-01A	THBS1	chr15	39881555	+	AGBL1	chr15	86790902	+
Frame-shit	ENST00000260356	ENST00000421325		TCGA	RV	HNSC	TCGA-CV-6960-01A	THBS1	chr15	39881555	+	AGBL1	chr15	86790902	+
5CDS-intron	ENST00000260356	ENST00000389298		TCGA	RV	HNSC	TCGA-CV-6960-01A	THBS1	chr15	39881555	+	AGBL1	chr15	86790902	+
5UTR-3CDS	ENST00000443839	ENST00000425759		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-3CDS	ENST00000443839	ENST00000292733		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000443839	ENST00000542773		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000443839	ENST00000263205		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000443839	ENST00000406969		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000443839	ENST00000382974		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000443839	ENST00000541476		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000443839	ENST00000478831		TCGA	LD	HNSC	TCGA-4P-AA8J-01A	SMPD4P1	chr22	20980383	-	MED15	chr22	20936898	+
Frame-shit	ENST00000543923	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000543923	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000543923	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000543923	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000543923	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000543923	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5UTR-3CDS	ENST00000435985	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5UTR-3CDS	ENST00000435985	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5UTR-3CDS	ENST00000435985	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5UTR-3CDS	ENST00000435985	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5UTR-3CDS	ENST00000435985	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5UTR-intron	ENST00000435985	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000280020	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000280020	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000280020	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000280020	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000280020	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000280020	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000591619	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000591619	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000591619	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000591619	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000591619	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000591619	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586135	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586135	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586135	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586135	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586135	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-intron	ENST00000586135	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000592521	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000592521	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000592521	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000592521	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000592521	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000592521	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586501	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586501	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586501	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586501	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000586501	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-intron	ENST00000586501	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000601437	ENST00000371460		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000601437	ENST00000371459		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000601437	ENST00000371461		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000601437	ENST00000306867		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000601437	ENST00000371458		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
intron-intron	ENST00000601437	ENST00000459689		TCGA	LD	HNSC	TCGA-BA-4075-01A	KIAA1328	chr18	34415339	+	SUPT3H	chr6	44797594	-
5CDS-5UTR	ENST00000313654	ENST00000304621		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000313654	ENST00000317571		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000313654	ENST00000578150		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000313654	ENST00000584250		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000313654	ENST00000577185		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000313654	ENST00000540918		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000399516	ENST00000304621		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000399516	ENST00000317571		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000399516	ENST00000578150		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000399516	ENST00000584250		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000399516	ENST00000577185		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000399516	ENST00000540918		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000269217	ENST00000304621		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000269217	ENST00000317571		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000269217	ENST00000578150		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000269217	ENST00000584250		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000269217	ENST00000577185		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000269217	ENST00000540918		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000587184	ENST00000304621		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-5UTR	ENST00000587184	ENST00000317571		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-3UTR	ENST00000587184	ENST00000578150		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000587184	ENST00000584250		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000587184	ENST00000577185		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
5CDS-intron	ENST00000587184	ENST00000540918		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
3UTR-5UTR	ENST00000588770	ENST00000304621		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
3UTR-5UTR	ENST00000588770	ENST00000317571		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
3UTR-3UTR	ENST00000588770	ENST00000578150		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
3UTR-intron	ENST00000588770	ENST00000584250		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
3UTR-intron	ENST00000588770	ENST00000577185		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
3UTR-intron	ENST00000588770	ENST00000540918		TCGA	LD	HNSC	TCGA-BA-4075-01A	LAMA3	chr18	21529888	+	TTC39C	chr18	21644104	+
Frame-shit	ENST00000471595	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000471595	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000471595	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000478469	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000478469	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000478469	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000251654	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000251654	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000251654	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000483687	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000483687	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000483687	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000490504	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000490504	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000490504	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000466072	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000466072	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000466072	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
intron-3CDS	ENST00000482086	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
intron-3UTR	ENST00000482086	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
intron-5UTR	ENST00000482086	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000468777	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000468777	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000468777	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000462637	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000462637	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000462637	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
Frame-shit	ENST00000469217	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-3UTR	ENST00000469217	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
5CDS-5UTR	ENST00000469217	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
3UTR-3CDS	ENST00000474833	ENST00000398015		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
3UTR-3UTR	ENST00000474833	ENST00000488154		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
3UTR-5UTR	ENST00000474833	ENST00000493838		TCGA	LD	HNSC	TCGA-BA-4075-01A	PCCB	chr3	135969400	+	EPHB1	chr3	134825290	+
In-frame	ENST00000367021	ENST00000235307		TCGA	LD	HNSC	TCGA-BA-4077-01B	IRF6	chr1	209969693	-	C1orf21	chr1	184588652	+
5CDS-3UTR	ENST00000367021	ENST00000367514		TCGA	LD	HNSC	TCGA-BA-4077-01B	IRF6	chr1	209969693	-	C1orf21	chr1	184588652	+
Frame-shit	ENST00000542854	ENST00000235307		TCGA	LD	HNSC	TCGA-BA-4077-01B	IRF6	chr1	209969693	-	C1orf21	chr1	184588652	+
5CDS-3UTR	ENST00000542854	ENST00000367514		TCGA	LD	HNSC	TCGA-BA-4077-01B	IRF6	chr1	209969693	-	C1orf21	chr1	184588652	+
Frame-shit	ENST00000329399	ENST00000371227		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000371249		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000306402		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000353505		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000371246		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000347291		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000393949		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000371247		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
In-frame	ENST00000329399	ENST00000607232		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000371245		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000361941		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000277982		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000354106		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000371239		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
Frame-shit	ENST00000329399	ENST00000371241		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5CDS-intron	ENST00000329399	ENST00000474353		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371227		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371249		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000306402		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000353505		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371246		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000347291		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000393949		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371247		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000607232		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371245		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000361941		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000277982		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000354106		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371239		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-3CDS	ENST00000477757	ENST00000371241		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
5UTR-intron	ENST00000477757	ENST00000474353		TCGA	LD	HNSC	TCGA-BA-4077-01B	PDLIM1	chr10	97050577	-	SORBS1	chr10	97074883	-
In-frame	ENST00000506538	ENST00000395634		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000450761		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000509025		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000379671		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000257435		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000447165		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000446294		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000506538	ENST00000515855		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000507742		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000509979		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000419114		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000509427		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000453526		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000455559		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000506538	ENST00000508870		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000395634		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000450761		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000509025		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000379671		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000257435		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000447165		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000446294		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000513710	ENST00000515855		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000507742		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000509979		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000419114		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000509427		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000453526		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000455559		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000513710	ENST00000508870		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000395634		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000450761		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000509025		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000379671		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000257435		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000447165		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000446294		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000505303	ENST00000515855		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000507742		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000509979		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000419114		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000509427		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000453526		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000455559		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
5CDS-5UTR	ENST00000505303	ENST00000508870		TCGA	LD	HNSC	TCGA-BA-4077-01B	WDR36	chr5	110428316	+	NREP	chr5	111071204	-
In-frame	ENST00000360359	ENST00000378454		TCGA	LD	HNSC	TCGA-BA-4078-01A	ANKS1A	chr6	34857376	+	DCDC2	chr6	24353851	-
5CDS-intron	ENST00000360359	ENST00000378450		TCGA	LD	HNSC	TCGA-BA-4078-01A	ANKS1A	chr6	34857376	+	DCDC2	chr6	24353851	-
In-frame	ENST00000535627	ENST00000378454		TCGA	LD	HNSC	TCGA-BA-4078-01A	ANKS1A	chr6	34857376	+	DCDC2	chr6	24353851	-
5CDS-intron	ENST00000535627	ENST00000378450		TCGA	LD	HNSC	TCGA-BA-4078-01A	ANKS1A	chr6	34857376	+	DCDC2	chr6	24353851	-
intron-3CDS	ENST00000470698	ENST00000378454		TCGA	LD	HNSC	TCGA-BA-4078-01A	ANKS1A	chr6	34857376	+	DCDC2	chr6	24353851	-
intron-intron	ENST00000470698	ENST00000378450		TCGA	LD	HNSC	TCGA-BA-4078-01A	ANKS1A	chr6	34857376	+	DCDC2	chr6	24353851	-
5CDS-5UTR	ENST00000375203	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
5CDS-5UTR	ENST00000375201	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000468502	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000549095	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000427136	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000439240	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000475964	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000547111	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000293709	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000383156	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000467437	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000553220	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000425571	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000435768	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
intron-5UTR	ENST00000476416	ENST00000377989		TCGA	LD	HNSC	TCGA-BA-4078-01A	ATF6B	chr6	32084257	-	CMAHP	chr6	25115328	-
Frame-shit	ENST00000375749	ENST00000538689		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
Frame-shit	ENST00000375749	ENST00000220584		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000446331		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000443614		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000525900		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000528812		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000530664		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000528643		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375749	ENST00000525777		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
Frame-shit	ENST00000375730	ENST00000538689		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
Frame-shit	ENST00000375730	ENST00000220584		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000446331		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000443614		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000525900		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000528812		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000530664		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000528643		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5CDS-3UTR	ENST00000375730	ENST00000525777		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3CDS	ENST00000539210	ENST00000538689		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3CDS	ENST00000539210	ENST00000220584		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000446331		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000443614		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000525900		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000528812		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000530664		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000528643		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
5UTR-3UTR	ENST00000539210	ENST00000525777		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3CDS	ENST00000486717	ENST00000538689		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3CDS	ENST00000486717	ENST00000220584		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000446331		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000443614		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000525900		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000528812		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000530664		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000528643		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
3UTR-3UTR	ENST00000486717	ENST00000525777		TCGA	LD	HNSC	TCGA-BA-4078-01A	POFUT1	chr20	30795868	+	FDFT1	chr8	11689027	+
Frame-shit	ENST00000338368	ENST00000297423		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
Frame-shit	ENST00000338368	ENST00000518074		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
Frame-shit	ENST00000338368	ENST00000541342		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5CDS-3UTR	ENST00000338368	ENST00000521214		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000338368	ENST00000517693		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000338368	ENST00000518060		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
Frame-shit	ENST00000314191	ENST00000297423		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
Frame-shit	ENST00000314191	ENST00000518074		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
Frame-shit	ENST00000314191	ENST00000541342		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5CDS-3UTR	ENST00000314191	ENST00000521214		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000314191	ENST00000517693		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5CDS-intron	ENST00000314191	ENST00000518060		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000297423		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000518074		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5UTR-3CDS	ENST00000523565	ENST00000541342		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5UTR-3UTR	ENST00000523565	ENST00000521214		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5UTR-intron	ENST00000523565	ENST00000517693		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
5UTR-intron	ENST00000523565	ENST00000518060		TCGA	LD	HNSC	TCGA-BA-4078-01A	PRKDC	chr8	48839754	-	SPIDR	chr8	48508373	+
In-frame	ENST00000382009	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000382009	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
5CDS-intron	ENST00000382009	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000237364	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000237364	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
5CDS-intron	ENST00000237364	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000467087	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000467087	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
5CDS-intron	ENST00000467087	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000412829	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000412829	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
5CDS-intron	ENST00000412829	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000467011	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000467011	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
5CDS-intron	ENST00000467011	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000465503	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000465503	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
5CDS-intron	ENST00000465503	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
intron-3CDS	ENST00000478425	ENST00000264866		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
intron-3CDS	ENST00000478425	ENST00000511789		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
intron-intron	ENST00000478425	ENST00000515568		TCGA	LD	HNSC	TCGA-BA-5151-01A	STIM2	chr4	26862991	+	TBC1D19	chr4	26721703	+
In-frame	ENST00000262031	ENST00000454682		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000262031	ENST00000550952		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000262031	ENST00000356769		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000262031	ENST00000552540		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000262031	ENST00000393891		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000262031	ENST00000548563		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000262031	ENST00000546392		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
5CDS-intron	ENST00000262031	ENST00000551793		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000454682		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000550952		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000356769		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000552540		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000393891		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000548563		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000552247	ENST00000546392		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-intron	ENST00000552247	ENST00000551793		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000454682		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000550952		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000356769		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000552540		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000393891		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000548563		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-3CDS	ENST00000549945	ENST00000546392		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
intron-intron	ENST00000549945	ENST00000551793		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000454682		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000550952		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000356769		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000552540		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000393891		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000548563		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000550726	ENST00000546392		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
5CDS-intron	ENST00000550726	ENST00000551793		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000454682		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000550952		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000356769		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000552540		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000393891		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000548563		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
In-frame	ENST00000542360	ENST00000546392		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
5CDS-intron	ENST00000542360	ENST00000551793		TCGA	LD	HNSC	TCGA-BA-5152-01A	RBMS2	chr12	56980710	+	NACA	chr12	57106974	-
5UTR-intron	ENST00000420415	ENST00000540235		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000420415	ENST00000393930		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000420415	ENST00000393931		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000420415	ENST00000310706		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-intron	ENST00000360110	ENST00000540235		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000360110	ENST00000393930		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000360110	ENST00000393931		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000360110	ENST00000310706		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-intron	ENST00000540528	ENST00000540235		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000540528	ENST00000393930		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000540528	ENST00000393931		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000540528	ENST00000310706		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-intron	ENST00000392396	ENST00000540235		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-5UTR	ENST00000392396	ENST00000393930		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-5UTR	ENST00000392396	ENST00000393931		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-5UTR	ENST00000392396	ENST00000310706		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-intron	ENST00000535031	ENST00000540235		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000535031	ENST00000393930		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000535031	ENST00000393931		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000535031	ENST00000310706		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-intron	ENST00000465288	ENST00000540235		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-5UTR	ENST00000465288	ENST00000393930		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-5UTR	ENST00000465288	ENST00000393931		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
intron-5UTR	ENST00000465288	ENST00000310706		TCGA	LD	HNSC	TCGA-BA-5557-01A	TFRC	chr3	195808914	-	JUP	chr17	39928114	-
5CDS-intron	ENST00000309731	ENST00000319622		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000565184		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000389093		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000335181		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000568883		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000449901		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000565154		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
5CDS-intron	ENST00000309731	ENST00000568459		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000319622		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000565184		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000389093		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000335181		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000568883		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000449901		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000565154		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
intron-intron	ENST00000564184	ENST00000568459		TCGA	LD	HNSC	TCGA-BA-5558-01A	GRAMD2	chr15	72490072	-	PKM	chr15	72494961	-
In-frame	ENST00000592694	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000592694	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000592694	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000337679	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000337679	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000337679	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000392124	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000392124	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000392124	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000339413	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000339413	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000339413	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000592246	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000592246	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000592246	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000329420	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000329420	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000329420	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
Frame-shit	ENST00000591784	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
Frame-shit	ENST00000591784	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000591784	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000591755	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
In-frame	ENST00000591755	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
5CDS-intron	ENST00000591755	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
intron-3CDS	ENST00000587361	ENST00000409003		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
intron-3CDS	ENST00000587361	ENST00000314727		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
intron-intron	ENST00000587361	ENST00000527515		TCGA	LD	HNSC	TCGA-BA-5559-01A	YIF1B	chr19	38800045	-	SAMD12	chr8	119452200	-
Frame-shit	ENST00000276585	ENST00000377182		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
5CDS-intron	ENST00000276585	ENST00000460688		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
In-frame	ENST00000521434	ENST00000377182		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
5CDS-intron	ENST00000521434	ENST00000460688		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
intron-3CDS	ENST00000521605	ENST00000377182		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
intron-intron	ENST00000521605	ENST00000460688		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
5UTR-3CDS	ENST00000522987	ENST00000377182		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
5UTR-intron	ENST00000522987	ENST00000460688		TCGA	LD	HNSC	TCGA-BA-6868-01B	MRPS28	chr8	80915234	-	MAMDC2	chr9	72723127	+
Frame-shit	ENST00000329399	ENST00000315183		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5CDS-intron	ENST00000329399	ENST00000562829		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5CDS-intron	ENST00000329399	ENST00000395799		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5CDS-intron	ENST00000329399	ENST00000432286		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5UTR-3CDS	ENST00000477757	ENST00000315183		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5UTR-intron	ENST00000477757	ENST00000562829		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5UTR-intron	ENST00000477757	ENST00000395799		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
5UTR-intron	ENST00000477757	ENST00000432286		TCGA	LD	HNSC	TCGA-BA-6869-01A	PDLIM1	chr10	97023621	-	TNRC6A	chr16	24800553	+
Frame-shit	ENST00000541529	ENST00000377298		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
In-frame	ENST00000541529	ENST00000361311		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
Frame-shit	ENST00000541529	ENST00000377288		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
5CDS-5UTR	ENST00000541529	ENST00000477264		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
Frame-shit	ENST00000270776	ENST00000377298		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
In-frame	ENST00000270776	ENST00000361311		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
Frame-shit	ENST00000270776	ENST00000377288		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
5CDS-5UTR	ENST00000270776	ENST00000477264		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
Frame-shit	ENST00000538557	ENST00000377298		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
In-frame	ENST00000538557	ENST00000361311		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
Frame-shit	ENST00000538557	ENST00000377288		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
5CDS-5UTR	ENST00000538557	ENST00000477264		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
intron-3CDS	ENST00000498356	ENST00000377298		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
intron-3CDS	ENST00000498356	ENST00000361311		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
intron-3CDS	ENST00000498356	ENST00000377288		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
intron-5UTR	ENST00000498356	ENST00000477264		TCGA	LD	HNSC	TCGA-BA-6869-01A	PGD	chr1	10459761	+	CLSTN1	chr1	9790763	-
5UTR-3CDS	ENST00000373953	ENST00000360359		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
5UTR-intron	ENST00000373953	ENST00000535627		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
5UTR-intron	ENST00000373953	ENST00000470698		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-3CDS	ENST00000440666	ENST00000360359		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000440666	ENST00000535627		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000440666	ENST00000470698		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-3CDS	ENST00000339411	ENST00000360359		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000339411	ENST00000535627		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000339411	ENST00000470698		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-3CDS	ENST00000482946	ENST00000360359		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000482946	ENST00000535627		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000482946	ENST00000470698		TCGA	LD	HNSC	TCGA-BA-6871-01A	ZNF76	chr6	35227504	+	ANKS1A	chr6	34985250	+
intron-intron	ENST00000525975	ENST00000494911		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000525975	ENST00000395900		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000525975	ENST00000459866		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-3UTR	ENST00000525975	ENST00000525436		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000525975	ENST00000478367		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000525975	ENST00000426618		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000525975	ENST00000442957		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000379016	ENST00000494911		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000379016	ENST00000395900		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000379016	ENST00000459866		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-3UTR	ENST00000379016	ENST00000525436		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000379016	ENST00000478367		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000379016	ENST00000426618		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000379016	ENST00000442957		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000303296	ENST00000494911		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000303296	ENST00000395900		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000303296	ENST00000459866		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-3UTR	ENST00000303296	ENST00000525436		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000303296	ENST00000478367		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000303296	ENST00000426618		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
5UTR-intron	ENST00000303296	ENST00000442957		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000456517	ENST00000494911		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000456517	ENST00000395900		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000456517	ENST00000459866		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-3UTR	ENST00000456517	ENST00000525436		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000456517	ENST00000478367		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000456517	ENST00000426618		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000456517	ENST00000442957		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000534262	ENST00000494911		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000534262	ENST00000395900		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000534262	ENST00000459866		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-3UTR	ENST00000534262	ENST00000525436		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000534262	ENST00000478367		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000534262	ENST00000426618		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
intron-intron	ENST00000534262	ENST00000442957		TCGA	LD	HNSC	TCGA-BA-6872-01A	HIPK3	chr11	33279435	+	WT1-AS	chr11	32473567	+
Frame-shit	ENST00000329841	ENST00000268035		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
Frame-shit	ENST00000329841	ENST00000558762		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000329841	ENST00000560432		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
Frame-shit	ENST00000346623	ENST00000268035		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
Frame-shit	ENST00000346623	ENST00000558762		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
5CDS-3UTR	ENST00000346623	ENST00000560432		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
intron-3CDS	ENST00000557963	ENST00000268035		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
intron-3CDS	ENST00000557963	ENST00000558762		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
intron-3UTR	ENST00000557963	ENST00000560432		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
3UTR-3CDS	ENST00000560555	ENST00000268035		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
3UTR-3CDS	ENST00000560555	ENST00000558762		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
3UTR-3UTR	ENST00000560555	ENST00000560432		TCGA	LD	HNSC	TCGA-BA-6873-01A	ALDH1A3	chr15	101427917	+	IGF1R	chr15	99434554	+
In-frame	ENST00000322147	ENST00000284382		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000322147	ENST00000538112		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000322147	ENST00000394113		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000322147	ENST00000560944		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
In-frame	ENST00000301873	ENST00000284382		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000301873	ENST00000538112		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000301873	ENST00000394113		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000301873	ENST00000560944		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000530785	ENST00000284382		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000530785	ENST00000538112		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000530785	ENST00000394113		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-5UTR	ENST00000530785	ENST00000560944		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000529189	ENST00000284382		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000529189	ENST00000538112		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000529189	ENST00000394113		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-5UTR	ENST00000529189	ENST00000560944		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000532932	ENST00000284382		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000532932	ENST00000538112		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000532932	ENST00000394113		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-5UTR	ENST00000532932	ENST00000560944		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000536982	ENST00000284382		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000536982	ENST00000538112		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000536982	ENST00000394113		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
intron-5UTR	ENST00000536982	ENST00000560944		TCGA	LD	HNSC	TCGA-BA-6873-01A	LTBP3	chr11	65321172	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000377809	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000377809	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000402010	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000402010	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000413835	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000413835	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
5UTR-3CDS	ENST00000377810	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
5UTR-3CDS	ENST00000377810	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000315032	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000315032	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000508192	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000508192	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000361128	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000361128	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000350490	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000350490	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000502399	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
Frame-shit	ENST00000502399	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000509502	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000509502	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000513765	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000513765	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000408948	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000408948	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000425897	ENST00000253362		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
intron-3CDS	ENST00000425897	ENST00000354932		TCGA	LD	HNSC	TCGA-BA-7269-01A	MARK2	chr11	63607032	+	BPIFA2	chr20	31765953	+
5CDS-intron	ENST00000261716	ENST00000353265		TCGA	LD	HNSC	TCGA-BA-7269-01A	TAOK1	chr17	27794234	+	PARD6G	chr18	77941033	-
5CDS-intron	ENST00000261716	ENST00000470488		TCGA	LD	HNSC	TCGA-BA-7269-01A	TAOK1	chr17	27794234	+	PARD6G	chr18	77941033	-
5CDS-intron	ENST00000536202	ENST00000353265		TCGA	LD	HNSC	TCGA-BA-7269-01A	TAOK1	chr17	27794234	+	PARD6G	chr18	77941033	-
5CDS-intron	ENST00000536202	ENST00000470488		TCGA	LD	HNSC	TCGA-BA-7269-01A	TAOK1	chr17	27794234	+	PARD6G	chr18	77941033	-
5CDS-5UTR	ENST00000330687	ENST00000226444		TCGA	LD	HNSC	TCGA-BA-A4IG-01A	CMTM4	chr16	66730243	-	SULT1E1	chr4	70723371	-
5CDS-5UTR	ENST00000394106	ENST00000226444		TCGA	LD	HNSC	TCGA-BA-A4IG-01A	CMTM4	chr16	66730243	-	SULT1E1	chr4	70723371	-
intron-5UTR	ENST00000563952	ENST00000226444		TCGA	LD	HNSC	TCGA-BA-A4IG-01A	CMTM4	chr16	66730243	-	SULT1E1	chr4	70723371	-
Frame-shit	ENST00000254051	ENST00000246657		TCGA	LD	HNSC	TCGA-BA-A4IG-01A	TNS4	chr17	38643288	-	CCR7	chr17	38712070	-
In-frame	ENST00000254051	ENST00000579344		TCGA	LD	HNSC	TCGA-BA-A4IG-01A	TNS4	chr17	38643288	-	CCR7	chr17	38712070	-
5CDS-5UTR	ENST00000356239	ENST00000265742		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000356239	ENST00000486698		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-5UTR	ENST00000358100	ENST00000265742		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000358100	ENST00000486698		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-5UTR	ENST00000359028	ENST00000265742		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000359028	ENST00000486698		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-5UTR	ENST00000394564	ENST00000265742		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000394564	ENST00000486698		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
intron-5UTR	ENST00000491695	ENST00000265742		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
intron-intron	ENST00000491695	ENST00000486698		TCGA	LD	HNSC	TCGA-BA-A4II-01A	AKAP9	chr7	91570461	+	ANKIB1	chr7	91924203	+
intron-3CDS	ENST00000405402	ENST00000253457		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
intron-3CDS	ENST00000405402	ENST00000435200		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
Frame-shit	ENST00000253458	ENST00000253457		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
Frame-shit	ENST00000253458	ENST00000435200		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
Frame-shit	ENST00000393243	ENST00000253457		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
Frame-shit	ENST00000393243	ENST00000435200		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
intron-3CDS	ENST00000471070	ENST00000253457		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
intron-3CDS	ENST00000471070	ENST00000435200		TCGA	LD	HNSC	TCGA-BA-A4II-01A	GSE1	chr16	85647004	+	EMC8	chr16	85822656	-
In-frame	ENST00000423485	ENST00000582809		TCGA	LD	HNSC	TCGA-BA-A4II-01A	TOP2A	chr17	38572992	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000423485	ENST00000577616		TCGA	LD	HNSC	TCGA-BA-A4II-01A	TOP2A	chr17	38572992	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000423485	ENST00000326270		TCGA	LD	HNSC	TCGA-BA-A4II-01A	TOP2A	chr17	38572992	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000423485	ENST00000346027		TCGA	LD	HNSC	TCGA-BA-A4II-01A	TOP2A	chr17	38572992	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000423485	ENST00000343388		TCGA	LD	HNSC	TCGA-BA-A4II-01A	TOP2A	chr17	38572992	-	TLK2	chr17	60637377	+
5CDS-intron	ENST00000423485	ENST00000542523		TCGA	LD	HNSC	TCGA-BA-A4II-01A	TOP2A	chr17	38572992	-	TLK2	chr17	60637377	+
5UTR-intron	ENST00000431639	ENST00000582151		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
5UTR-intron	ENST00000431639	ENST00000250124		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
5UTR-intron	ENST00000431639	ENST00000396501		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
5UTR-intron	ENST00000431639	ENST00000423172		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000316024	ENST00000582151		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000316024	ENST00000250124		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000316024	ENST00000396501		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000316024	ENST00000423172		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000457584	ENST00000582151		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000457584	ENST00000250124		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000457584	ENST00000396501		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000457584	ENST00000423172		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000396463	ENST00000582151		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000396463	ENST00000250124		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000396463	ENST00000396501		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000396463	ENST00000423172		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000534050	ENST00000582151		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000534050	ENST00000250124		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000534050	ENST00000396501		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
intron-intron	ENST00000534050	ENST00000423172		TCGA	LD	HNSC	TCGA-BA-A4II-01A	WRAP53	chr17	7589396	+	MPDU1	chr17	7495169	+
5UTR-5UTR	ENST00000368006	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000368006	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-5UTR	ENST00000458050	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000458050	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
intron-5UTR	ENST00000545495	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
intron-intron	ENST00000545495	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-5UTR	ENST00000392188	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000392188	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-5UTR	ENST00000489249	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000489249	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-5UTR	ENST00000490843	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000490843	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-5UTR	ENST00000368005	ENST00000368003		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
5UTR-intron	ENST00000368005	ENST00000473766		TCGA	LD	HNSC	TCGA-BA-A6D8-01A	DEDD	chr1	161100605	-	UFC1	chr1	161123716	+
In-frame	ENST00000253251	ENST00000356607		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5CDS-intron	ENST00000253251	ENST00000538836		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5CDS-3UTR	ENST00000253251	ENST00000492696		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5UTR-3CDS	ENST00000377157	ENST00000356607		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5UTR-intron	ENST00000377157	ENST00000538836		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5UTR-3UTR	ENST00000377157	ENST00000492696		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
In-frame	ENST00000343090	ENST00000356607		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5CDS-intron	ENST00000343090	ENST00000538836		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5CDS-3UTR	ENST00000343090	ENST00000492696		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
In-frame	ENST00000377153	ENST00000356607		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5CDS-intron	ENST00000377153	ENST00000538836		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
5CDS-3UTR	ENST00000377153	ENST00000492696		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
intron-3CDS	ENST00000475795	ENST00000356607		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
intron-intron	ENST00000475795	ENST00000538836		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
intron-3UTR	ENST00000475795	ENST00000492696		TCGA	LD	HNSC	TCGA-BA-A6DJ-01A	UBE4B	chr1	10093752	+	PEX14	chr1	10596270	+
Frame-shit	ENST00000540080	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000540080	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000540080	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000540080	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000540080	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000540080	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000433436	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000433436	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000433436	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000433436	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000433436	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000433436	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000538225	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000538225	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000538225	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000538225	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000538225	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000538225	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000345519	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000345519	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000345519	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000345519	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000345519	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000345519	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000470744	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000470744	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000470744	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000470744	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000470744	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000470744	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000242285	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000242285	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000242285	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000242285	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000242285	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000242285	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000466396	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000466396	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000466396	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000466396	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000466396	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000466396	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000396603	ENST00000396594		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
Frame-shit	ENST00000396603	ENST00000539815		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000396603	ENST00000543356		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-intron	ENST00000396603	ENST00000539208		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000396603	ENST00000447283		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
5CDS-5UTR	ENST00000396603	ENST00000377902		TCGA	LD	HNSC	TCGA-BA-A6DL-01A	CLTA	chr9	36204176	+	GNE	chr9	36249394	-
3UTR-3CDS	ENST00000411630	ENST00000263956		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	DANCR	chr4	53579126	+	GTF3C3	chr2	197634763	-
3UTR-intron	ENST00000411630	ENST00000409364		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	DANCR	chr4	53579126	+	GTF3C3	chr2	197634763	-
3UTR-intron	ENST00000411630	ENST00000470386		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	DANCR	chr4	53579126	+	GTF3C3	chr2	197634763	-
5UTR-3CDS	ENST00000304056	ENST00000396193		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
5UTR-intron	ENST00000304056	ENST00000396191		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
5UTR-intron	ENST00000304056	ENST00000321453		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
5UTR-intron	ENST00000304056	ENST00000396184		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
5UTR-intron	ENST00000304056	ENST00000479980		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
5UTR-intron	ENST00000304056	ENST00000396182		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
intron-3CDS	ENST00000485611	ENST00000396193		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
intron-intron	ENST00000485611	ENST00000396191		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
intron-intron	ENST00000485611	ENST00000321453		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
intron-intron	ENST00000485611	ENST00000396184		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
intron-intron	ENST00000485611	ENST00000479980		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
intron-intron	ENST00000485611	ENST00000396182		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	KBTBD2	chr7	32931148	-	PDE1C	chr7	32209568	-
5UTR-3CDS	ENST00000318948	ENST00000284116		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000318948	ENST00000581140		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000318948	ENST00000581276		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000400199	ENST00000284116		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000400199	ENST00000581140		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000400199	ENST00000581276		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000400202	ENST00000284116		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000400202	ENST00000581140		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
5UTR-3CDS	ENST00000400202	ENST00000581276		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	NRIP1	chr21	16437066	-	GDPD1	chr17	57322775	+
Frame-shit	ENST00000308488	ENST00000278550		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
5CDS-intron	ENST00000308488	ENST00000533038		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
Frame-shit	ENST00000360355	ENST00000278550		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
5CDS-intron	ENST00000360355	ENST00000533038		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
intron-3CDS	ENST00000480887	ENST00000278550		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
intron-intron	ENST00000480887	ENST00000533038		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
5UTR-3CDS	ENST00000530604	ENST00000278550		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
5UTR-intron	ENST00000530604	ENST00000533038		TCGA	LD	HNSC	TCGA-BA-A8YP-01A	RSF1	chr11	77531574	-	TENM4	chr11	78449615	-
5CDS-intron	ENST00000323116	ENST00000454872		TCGA	LD	HNSC	TCGA-BB-4223-01A	ATP11B	chr3	182587119	+	NAALADL2	chr3	175373269	+
5CDS-intron	ENST00000323116	ENST00000473253		TCGA	LD	HNSC	TCGA-BB-4223-01A	ATP11B	chr3	182587119	+	NAALADL2	chr3	175373269	+
intron-intron	ENST00000493826	ENST00000454872		TCGA	LD	HNSC	TCGA-BB-4223-01A	ATP11B	chr3	182587119	+	NAALADL2	chr3	175373269	+
intron-intron	ENST00000493826	ENST00000473253		TCGA	LD	HNSC	TCGA-BB-4223-01A	ATP11B	chr3	182587119	+	NAALADL2	chr3	175373269	+
intron-intron	ENST00000482794	ENST00000454872		TCGA	LD	HNSC	TCGA-BB-4223-01A	ATP11B	chr3	182587119	+	NAALADL2	chr3	175373269	+
intron-intron	ENST00000482794	ENST00000473253		TCGA	LD	HNSC	TCGA-BB-4223-01A	ATP11B	chr3	182587119	+	NAALADL2	chr3	175373269	+
5UTR-intron	ENST00000548446	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000548446	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000548446	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000548446	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-5UTR	ENST00000548446	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000420353	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000420353	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000420353	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000420353	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-5UTR	ENST00000420353	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000415113	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000415113	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000415113	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000415113	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-5UTR	ENST00000415113	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000456903	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000456903	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000456903	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000456903	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-5UTR	ENST00000456903	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000548118	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000548118	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000548118	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000548118	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-5UTR	ENST00000548118	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000591397	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000591397	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000591397	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-intron	ENST00000591397	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
5UTR-5UTR	ENST00000591397	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000328463	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000328463	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000328463	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000328463	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-5UTR	ENST00000328463	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000546661	ENST00000550241		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000546661	ENST00000602871		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000546661	ENST00000394349		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-intron	ENST00000546661	ENST00000549164		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
intron-5UTR	ENST00000546661	ENST00000338662		TCGA	LD	HNSC	TCGA-BB-4224-01A	ATF7	chr12	54020064	-	ATP5G2	chr12	54070444	-
Frame-shit	ENST00000277541	ENST00000357365		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000277541	ENST00000298537		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
Frame-shit	ENST00000277541	ENST00000371725		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
5CDS-intron	ENST00000277541	ENST00000461693		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000491649	ENST00000357365		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000491649	ENST00000298537		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
intron-3CDS	ENST00000491649	ENST00000371725		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
intron-intron	ENST00000491649	ENST00000461693		TCGA	LD	HNSC	TCGA-BB-4224-01A	NOTCH1	chr9	139438476	-	SDCCAG3	chr9	139302390	-
intron-intron	ENST00000430725	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
intron-intron	ENST00000325438	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
intron-intron	ENST00000458164	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
intron-intron	ENST00000447393	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
intron-intron	ENST00000547217	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
intron-intron	ENST00000551743	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
intron-intron	ENST00000551801	ENST00000408206		TCGA	LD	HNSC	TCGA-BB-4224-01A	PACS2	chr14	105820070	+	DIO3OS	chr14	102019094	-
5CDS-intron	ENST00000155840	ENST00000406787		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
5CDS-intron	ENST00000155840	ENST00000342303		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
5CDS-intron	ENST00000155840	ENST00000407364		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
5CDS-intron	ENST00000155840	ENST00000303459		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
5CDS-intron	ENST00000155840	ENST00000403099		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
5CDS-intron	ENST00000155840	ENST00000379199		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000335475	ENST00000406787		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000335475	ENST00000342303		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000335475	ENST00000407364		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000335475	ENST00000303459		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000335475	ENST00000403099		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000335475	ENST00000379199		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000526095	ENST00000406787		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000526095	ENST00000342303		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000526095	ENST00000407364		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000526095	ENST00000303459		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000526095	ENST00000403099		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
intron-intron	ENST00000526095	ENST00000379199		TCGA	LD	HNSC	TCGA-BB-4225-01A	KCNQ1	chr11	2466714	+	METTL15	chr11	28548022	+
5CDS-5UTR	ENST00000320717	ENST00000339514		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000320717	ENST00000392318		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000320717	ENST00000304164		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000320717	ENST00000392316		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000320717	ENST00000439065		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000320717	ENST00000496992		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000339514		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000392318		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000304164		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000392316		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000338435	ENST00000439065		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000338435	ENST00000496992		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000339514		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000392318		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000304164		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000392316		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409626	ENST00000439065		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409626	ENST00000496992		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000339514		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000392318		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000304164		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000392316		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409428	ENST00000439065		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409428	ENST00000496992		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000339514		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000392318		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000304164		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000392316		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409215	ENST00000439065		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409215	ENST00000496992		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000339514		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000392318		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000304164		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000392316		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000471443	ENST00000439065		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000471443	ENST00000496992		TCGA	LD	HNSC	TCGA-BB-4227-01A	GLS	chr2	191789319	+	MYO1B	chr2	192141613	+
Frame-shit	ENST00000323534	ENST00000299381		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152880846	+	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000323534	ENST00000470481		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152880846	+	ANAPC16	chr10	73990124	+
3UTR-intron	ENST00000323534	ENST00000394919		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
3UTR-intron	ENST00000323534	ENST00000342444		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
3UTR-intron	ENST00000323534	ENST00000317168		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
3UTR-intron	ENST00000323534	ENST00000545550		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
3UTR-intron	ENST00000323534	ENST00000317126		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
3UTR-intron	ENST00000323534	ENST00000394915		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
3UTR-5UTR	ENST00000323534	ENST00000492502		TCGA	LD	HNSC	TCGA-BB-4227-01A	RAP2B	chr3	152881366	+	ASCC1	chr10	73975830	-
Frame-shit	ENST00000321582	ENST00000537618		TCGA	LD	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124801551	-	NDUFA8	chr9	124910556	-
Frame-shit	ENST00000321582	ENST00000373768		TCGA	LD	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124801551	-	NDUFA8	chr9	124910556	-
5UTR-3CDS	ENST00000474723	ENST00000537618		TCGA	LD	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124801551	-	NDUFA8	chr9	124910556	-
5UTR-3CDS	ENST00000474723	ENST00000373768		TCGA	LD	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124801551	-	NDUFA8	chr9	124910556	-
Frame-shit	ENST00000373776	ENST00000537618		TCGA	LD	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124801551	-	NDUFA8	chr9	124910556	-
Frame-shit	ENST00000373776	ENST00000373768		TCGA	LD	HNSC	TCGA-BB-4227-01A	TTLL11	chr9	124801551	-	NDUFA8	chr9	124910556	-
In-frame	ENST00000277817	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
Frame-shit	ENST00000277817	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000277817	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-5UTR	ENST00000277817	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
Frame-shit	ENST00000412272	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
In-frame	ENST00000412272	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000412272	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-5UTR	ENST00000412272	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
Frame-shit	ENST00000395198	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
In-frame	ENST00000395198	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000395198	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-5UTR	ENST00000395198	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
Frame-shit	ENST00000373700	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
In-frame	ENST00000373700	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000373700	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-5UTR	ENST00000373700	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
3UTR-3CDS	ENST00000395187	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
3UTR-3CDS	ENST00000395187	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
3UTR-intron	ENST00000395187	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
3UTR-5UTR	ENST00000395187	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000480158	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000480158	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-intron	ENST00000480158	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-5UTR	ENST00000480158	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000492996	ENST00000433211		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000492996	ENST00000373744		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-intron	ENST00000492996	ENST00000545309		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
intron-5UTR	ENST00000492996	ENST00000373735		TCGA	LD	HNSC	TCGA-BB-7861-01A	HERC4	chr10	69749968	-	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000374980	ENST00000593786		TCGA	LD	HNSC	TCGA-BB-7866-01A	EIF2S2	chr20	32686304	-	NCOA6	chr20	33331145	-
5CDS-intron	ENST00000374980	ENST00000374796		TCGA	LD	HNSC	TCGA-BB-7866-01A	EIF2S2	chr20	32686304	-	NCOA6	chr20	33331145	-
5CDS-intron	ENST00000374980	ENST00000359003		TCGA	LD	HNSC	TCGA-BB-7866-01A	EIF2S2	chr20	32686304	-	NCOA6	chr20	33331145	-
Frame-shit	ENST00000264951	ENST00000392993		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
Frame-shit	ENST00000264951	ENST00000544571		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
5CDS-5UTR	ENST00000264951	ENST00000466685		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
Frame-shit	ENST00000392981	ENST00000392993		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
Frame-shit	ENST00000392981	ENST00000544571		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
5CDS-5UTR	ENST00000392981	ENST00000466685		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000463916	ENST00000392993		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000463916	ENST00000544571		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-5UTR	ENST00000463916	ENST00000466685		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000544157	ENST00000392993		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000544157	ENST00000544571		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-5UTR	ENST00000544157	ENST00000466685		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000465074	ENST00000392993		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000465074	ENST00000544571		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
intron-5UTR	ENST00000465074	ENST00000466685		TCGA	LD	HNSC	TCGA-BB-7866-01A	XRN1	chr3	142066076	-	GK5	chr3	141934534	-
5CDS-5UTR	ENST00000539909	ENST00000546088		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
5CDS-intron	ENST00000539909	ENST00000448108		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
5CDS-5UTR	ENST00000286621	ENST00000546088		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
5CDS-intron	ENST00000286621	ENST00000448108		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
5CDS-5UTR	ENST00000372734	ENST00000546088		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
5CDS-intron	ENST00000372734	ENST00000448108		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
intron-5UTR	ENST00000541550	ENST00000546088		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
intron-intron	ENST00000541550	ENST00000448108		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
intron-5UTR	ENST00000467840	ENST00000546088		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
intron-intron	ENST00000467840	ENST00000448108		TCGA	LD	HNSC	TCGA-BB-7871-01A	ADK	chr10	75984349	+	TAF1D	chr11	93465457	-
3UTR-3UTR	ENST00000372236	ENST00000337147		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-3UTR	ENST00000372236	ENST00000367075		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-intron	ENST00000372236	ENST00000392177		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-intron	ENST00000372236	ENST00000476189		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
intron-3UTR	ENST00000535400	ENST00000337147		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
intron-3UTR	ENST00000535400	ENST00000367075		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
intron-intron	ENST00000535400	ENST00000392177		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
intron-intron	ENST00000535400	ENST00000476189		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-3UTR	ENST00000372226	ENST00000337147		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-3UTR	ENST00000372226	ENST00000367075		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-intron	ENST00000372226	ENST00000392177		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
3UTR-intron	ENST00000372226	ENST00000476189		TCGA	LD	HNSC	TCGA-BB-7871-01A	POLH	chr6	43583262	+	EZR	chr6	159187476	-
5UTR-3CDS	ENST00000359941	ENST00000265724		TCGA	LD	HNSC	TCGA-BB-7872-01A	TP53TG1	chr7	86970839	-	ABCB1	chr7	87183248	-
5UTR-3CDS	ENST00000359941	ENST00000543898		TCGA	LD	HNSC	TCGA-BB-7872-01A	TP53TG1	chr7	86970839	-	ABCB1	chr7	87183248	-
5UTR-intron	ENST00000359941	ENST00000488737		TCGA	LD	HNSC	TCGA-BB-7872-01A	TP53TG1	chr7	86970839	-	ABCB1	chr7	87183248	-
5CDS-3UTR	ENST00000358731	ENST00000450213		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	BDP1	chr5	70779723	+	PMCHL2	chr5	70673333	+
5UTR-3UTR	ENST00000380675	ENST00000450213		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	BDP1	chr5	70779723	+	PMCHL2	chr5	70673333	+
5UTR-5UTR	ENST00000307569	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000307569	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000307569	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000307569	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000324432	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000324432	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000324432	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000324432	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000446600	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000446600	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000446600	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000446600	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-5UTR	ENST00000413936	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-5UTR	ENST00000413936	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-intron	ENST00000413936	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-intron	ENST00000413936	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000430490	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-5UTR	ENST00000430490	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000430490	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
5UTR-intron	ENST00000430490	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-5UTR	ENST00000472426	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-5UTR	ENST00000472426	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-intron	ENST00000472426	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-intron	ENST00000472426	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-5UTR	ENST00000446820	ENST00000336517		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-5UTR	ENST00000446820	ENST00000394857		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-intron	ENST00000446820	ENST00000416245		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
intron-intron	ENST00000446820	ENST00000467555		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	DTX2	chr7	76093026	+	ZP3	chr7	76054369	+
Frame-shit	ENST00000245441	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
Frame-shit	ENST00000389868	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
Frame-shit	ENST00000530997	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
Frame-shit	ENST00000382043	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
Frame-shit	ENST00000382041	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
Frame-shit	ENST00000324330	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
Frame-shit	ENST00000453196	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
intron-3CDS	ENST00000486200	ENST00000324679		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	NIN	chr14	51237106	-	SAV1	chr14	51132337	-
5UTR-5UTR	ENST00000394947	ENST00000567134		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000394947	ENST00000308588		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000394947	ENST00000564644		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000394947	ENST00000371091		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000394947	ENST00000564675		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000360439	ENST00000567134		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000360439	ENST00000308588		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000360439	ENST00000564644		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000360439	ENST00000371091		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000360439	ENST00000564675		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000394949	ENST00000567134		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000394949	ENST00000308588		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000394949	ENST00000564644		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000394949	ENST00000371091		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
intron-5UTR	ENST00000394949	ENST00000564675		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000567289	ENST00000567134		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000567289	ENST00000308588		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000567289	ENST00000564644		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000567289	ENST00000371091		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-5UTR	ENST00000567289	ENST00000564675		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SIN3A	chr15	75743764	-	SNUPN	chr15	75913397	-
5UTR-intron	ENST00000491545	ENST00000216024		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5UTR-intron	ENST00000491545	ENST00000428462		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5UTR-5UTR	ENST00000491545	ENST00000464842		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5CDS-intron	ENST00000435456	ENST00000216024		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5CDS-intron	ENST00000435456	ENST00000428462		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5CDS-5UTR	ENST00000435456	ENST00000464842		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
intron-intron	ENST00000402844	ENST00000216024		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
intron-intron	ENST00000402844	ENST00000428462		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
intron-5UTR	ENST00000402844	ENST00000464842		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5UTR-intron	ENST00000544408	ENST00000216024		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5UTR-intron	ENST00000544408	ENST00000428462		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5UTR-5UTR	ENST00000544408	ENST00000464842		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5CDS-intron	ENST00000542412	ENST00000216024		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5CDS-intron	ENST00000542412	ENST00000428462		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
5CDS-5UTR	ENST00000542412	ENST00000464842		TCGA	LD	HNSC	TCGA-BB-A5HY-01A	SLC25A17	chr22	41195027	-	DMC1	chr22	38965395	-
In-frame	ENST00000325722	ENST00000373347		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
5CDS-intron	ENST00000325722	ENST00000495979		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
5CDS-intron	ENST00000325722	ENST00000235180		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
intron-3CDS	ENST00000373266	ENST00000373347		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
intron-intron	ENST00000373266	ENST00000495979		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
intron-intron	ENST00000373266	ENST00000235180		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
intron-3CDS	ENST00000485551	ENST00000373347		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
intron-intron	ENST00000485551	ENST00000495979		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
intron-intron	ENST00000485551	ENST00000235180		TCGA	LD	HNSC	TCGA-CN-4723-01A	KIAA0319L	chr1	36019951	-	DLGAP3	chr1	35334690	-
In-frame	ENST00000264313	ENST00000226432		TCGA	LD	HNSC	TCGA-CN-4725-01A	SLAIN2	chr4	48385801	+	CWH43	chr4	49005752	+
In-frame	ENST00000264313	ENST00000513409		TCGA	LD	HNSC	TCGA-CN-4725-01A	SLAIN2	chr4	48385801	+	CWH43	chr4	49005752	+
intron-3CDS	ENST00000506375	ENST00000226432		TCGA	LD	HNSC	TCGA-CN-4725-01A	SLAIN2	chr4	48385801	+	CWH43	chr4	49005752	+
intron-3CDS	ENST00000506375	ENST00000513409		TCGA	LD	HNSC	TCGA-CN-4725-01A	SLAIN2	chr4	48385801	+	CWH43	chr4	49005752	+
In-frame	ENST00000512093	ENST00000226432		TCGA	LD	HNSC	TCGA-CN-4725-01A	SLAIN2	chr4	48385801	+	CWH43	chr4	49005752	+
In-frame	ENST00000512093	ENST00000513409		TCGA	LD	HNSC	TCGA-CN-4725-01A	SLAIN2	chr4	48385801	+	CWH43	chr4	49005752	+
In-frame	ENST00000223500	ENST00000379725		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
In-frame	ENST00000223500	ENST00000379723		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
In-frame	ENST00000223500	ENST00000379721		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
In-frame	ENST00000419016	ENST00000379725		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
In-frame	ENST00000419016	ENST00000379723		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
In-frame	ENST00000419016	ENST00000379721		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000487080	ENST00000379725		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000487080	ENST00000379723		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000487080	ENST00000379721		TCGA	LD	HNSC	TCGA-CN-4726-01A	CHMP5	chr9	33276562	+	SPINK4	chr9	33245110	+
In-frame	ENST00000257192	ENST00000379802		TCGA	LD	HNSC	TCGA-CN-4726-01A	DSG1	chr18	28911830	+	DSP	chr6	7568014	+
In-frame	ENST00000257192	ENST00000418664		TCGA	LD	HNSC	TCGA-CN-4726-01A	DSG1	chr18	28911830	+	DSP	chr6	7568014	+
intron-3CDS	ENST00000462981	ENST00000379802		TCGA	LD	HNSC	TCGA-CN-4726-01A	DSG1	chr18	28911830	+	DSP	chr6	7568014	+
intron-3CDS	ENST00000462981	ENST00000418664		TCGA	LD	HNSC	TCGA-CN-4726-01A	DSG1	chr18	28911830	+	DSP	chr6	7568014	+
In-frame	ENST00000316878	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-4726-01A	PPP1R9B	chr17	48226508	-	COL1A1	chr17	48270211	-
5UTR-3CDS	ENST00000501501	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-4726-01A	PPP1R9B	chr17	48226508	-	COL1A1	chr17	48270211	-
3UTR-3CDS	ENST00000476359	ENST00000286448		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
3UTR-3UTR	ENST00000476359	ENST00000479687		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
3UTR-3UTR	ENST00000476359	ENST00000262640		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
3UTR-3UTR	ENST00000476359	ENST00000460621		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
Frame-shit	ENST00000297967	ENST00000286448		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
5CDS-3UTR	ENST00000297967	ENST00000479687		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
5CDS-3UTR	ENST00000297967	ENST00000262640		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
5CDS-3UTR	ENST00000297967	ENST00000460621		TCGA	LD	HNSC	TCGA-CN-4728-01A	NLGN4Y	chrY	16734471	+	VAMP7	chrY	59272371	+
Frame-shit	ENST00000336308	ENST00000582888		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000336308	ENST00000602676		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000336308	ENST00000322297		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000336308	ENST00000583542		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000336308	ENST00000588673		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
3UTR-3CDS	ENST00000578232	ENST00000582888		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
3UTR-3CDS	ENST00000578232	ENST00000602676		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
3UTR-3CDS	ENST00000578232	ENST00000322297		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
3UTR-3CDS	ENST00000578232	ENST00000583542		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
3UTR-3CDS	ENST00000578232	ENST00000588673		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
In-frame	ENST00000544210	ENST00000582888		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
In-frame	ENST00000544210	ENST00000602676		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
In-frame	ENST00000544210	ENST00000322297		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
In-frame	ENST00000544210	ENST00000583542		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
In-frame	ENST00000544210	ENST00000588673		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000394250	ENST00000582888		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000394250	ENST00000602676		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000394250	ENST00000322297		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000394250	ENST00000583542		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000394250	ENST00000588673		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000580611	ENST00000582888		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000580611	ENST00000602676		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000580611	ENST00000322297		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000580611	ENST00000583542		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
Frame-shit	ENST00000580611	ENST00000588673		TCGA	LD	HNSC	TCGA-CN-4730-01A	STARD3	chr17	37814775	+	OAZ1	chr19	2271781	+
5CDS-5UTR	ENST00000377892	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
5CDS-5UTR	ENST00000377890	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
5CDS-5UTR	ENST00000377891	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
5CDS-5UTR	ENST00000377889	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
5CDS-5UTR	ENST00000535296	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
intron-5UTR	ENST00000338663	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
intron-5UTR	ENST00000538682	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
intron-5UTR	ENST00000536981	ENST00000294117		TCGA	LD	HNSC	TCGA-CN-4731-01A	SLC3A2	chr11	62623853	+	GNG3	chr11	62475172	+
Frame-shit	ENST00000381750	ENST00000223864		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000381750	ENST00000482696		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000381730	ENST00000223864		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000381730	ENST00000482696		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000381728	ENST00000223864		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000381728	ENST00000482696		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000448872	ENST00000223864		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000448872	ENST00000482696		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000381732	ENST00000223864		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000381732	ENST00000482696		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000445485	ENST00000223864		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000445485	ENST00000482696		TCGA	LD	HNSC	TCGA-CN-4733-01A	RCL1	chr9	4793227	+	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000327040	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000327040	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000327040	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000327040	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000327040	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-intron	ENST00000327040	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-intron	ENST00000327040	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
Frame-shit	ENST00000440756	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000440756	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000440756	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000440756	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000440756	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-intron	ENST00000440756	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-intron	ENST00000440756	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-3CDS	ENST00000286485	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000286485	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000286485	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000286485	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000286485	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-intron	ENST00000286485	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-intron	ENST00000286485	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-3CDS	ENST00000428502	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000428502	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000428502	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000428502	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000428502	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-intron	ENST00000428502	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-intron	ENST00000428502	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
Frame-shit	ENST00000523619	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000523619	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000523619	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000523619	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000523619	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-intron	ENST00000523619	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
5CDS-intron	ENST00000523619	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-3CDS	ENST00000520789	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000520789	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000520789	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000520789	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-5UTR	ENST00000520789	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-intron	ENST00000520789	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
intron-intron	ENST00000520789	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4735-01A	PSD3	chr8	18725184	-	ANO1	chr11	69933858	+
In-frame	ENST00000257836	ENST00000399302		TCGA	LD	HNSC	TCGA-CN-4736-01A	PRRG4	chr11	32852178	+	QSER1	chr11	32975403	+
5CDS-intron	ENST00000257836	ENST00000527250		TCGA	LD	HNSC	TCGA-CN-4736-01A	PRRG4	chr11	32852178	+	QSER1	chr11	32975403	+
5CDS-intron	ENST00000257836	ENST00000527788		TCGA	LD	HNSC	TCGA-CN-4736-01A	PRRG4	chr11	32852178	+	QSER1	chr11	32975403	+
5CDS-3UTR	ENST00000225235	ENST00000394036		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000225235	ENST00000394045		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000225235	ENST00000348459		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000225235	ENST00000371332		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000225235	ENST00000239026		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
5CDS-intron	ENST00000225235	ENST00000394044		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
5CDS-intron	ENST00000225235	ENST00000462057		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000485048	ENST00000394036		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000485048	ENST00000394045		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000485048	ENST00000348459		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000485048	ENST00000371332		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000485048	ENST00000239026		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-intron	ENST00000485048	ENST00000394044		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-intron	ENST00000485048	ENST00000462057		TCGA	LD	HNSC	TCGA-CN-4737-01A	TBC1D12	chr10	96201776	+	HELLS	chr10	96347986	+
intron-3CDS	ENST00000375063	ENST00000259455		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
intron-5UTR	ENST00000375063	ENST00000477471		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
In-frame	ENST00000375064	ENST00000259455		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
5CDS-5UTR	ENST00000375064	ENST00000477471		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
Frame-shit	ENST00000342112	ENST00000259455		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
5CDS-5UTR	ENST00000342112	ENST00000477471		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
In-frame	ENST00000375066	ENST00000259455		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
5CDS-5UTR	ENST00000375066	ENST00000477471		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
5UTR-3CDS	ENST00000493589	ENST00000259455		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
5UTR-5UTR	ENST00000493589	ENST00000477471		TCGA	LD	HNSC	TCGA-CN-4739-01A	TBC1D2	chr9	100991234	-	GABBR2	chr9	101258796	-
In-frame	ENST00000394071	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000394071	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000394071	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000394071	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000394071	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000394071	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000394071	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000286523	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000286523	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000286523	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000286523	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000286523	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
In-frame	ENST00000286523	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
5CDS-intron	ENST00000286523	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000486739	ENST00000355303		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000486739	ENST00000398543		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000486739	ENST00000538023		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000486739	ENST00000316296		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000486739	ENST00000530676		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-3CDS	ENST00000486739	ENST00000531349		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
intron-intron	ENST00000486739	ENST00000525494		TCGA	LD	HNSC	TCGA-CN-4742-01A	ELMSAN1	chr14	74194161	-	ANO1	chr11	69957813	+
5CDS-5UTR	ENST00000309446	ENST00000264276		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000309446	ENST00000467448		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000309446	ENST00000496244		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-intron	ENST00000309446	ENST00000457679		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000421199	ENST00000264276		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000421199	ENST00000467448		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000421199	ENST00000496244		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-intron	ENST00000421199	ENST00000457679		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000423015	ENST00000264276		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000423015	ENST00000467448		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000423015	ENST00000496244		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-intron	ENST00000423015	ENST00000457679		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000458272	ENST00000264276		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000458272	ENST00000467448		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-5UTR	ENST00000458272	ENST00000496244		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
5CDS-intron	ENST00000458272	ENST00000457679		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000412414	ENST00000264276		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000412414	ENST00000467448		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000412414	ENST00000496244		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-intron	ENST00000412414	ENST00000457679		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000467833	ENST00000264276		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000467833	ENST00000467448		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-5UTR	ENST00000467833	ENST00000496244		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
intron-intron	ENST00000467833	ENST00000457679		TCGA	LD	HNSC	TCGA-CN-4742-01A	KLF7	chr2	208030191	-	ALS2	chr2	202633668	-
Frame-shit	ENST00000307404	ENST00000345136		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000357649		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000354589		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000398774		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000322810		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000354958		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000356346		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000436759		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000307404	ENST00000527096		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000345136		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000357649		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000354589		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000398774		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000322810		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000354958		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000356346		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000436759		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
Frame-shit	ENST00000529231	ENST00000527096		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000345136		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000357649		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000354589		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000398774		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000322810		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000354958		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000356346		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000436759		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
intron-3CDS	ENST00000525016	ENST00000527096		TCGA	LD	HNSC	TCGA-CN-5355-01A	BOP1	chr8	145500212	-	PLEC	chr8	145012860	-
In-frame	ENST00000543727	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000543727	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000543727	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000543727	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000543727	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000543727	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000543727	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000543727	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000543727	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000550559	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000550559	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000550559	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000550559	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000550559	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000550559	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000550559	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000550559	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000550559	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000548851	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000548851	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000548851	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000548851	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000548851	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000548851	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000548851	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000548851	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000548851	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000454289	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000454289	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000454289	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000454289	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000454289	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000454289	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000454289	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000454289	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000454289	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-3CDS	ENST00000540550	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-3CDS	ENST00000540550	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-3CDS	ENST00000540550	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-3CDS	ENST00000540550	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-intron	ENST00000540550	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-intron	ENST00000540550	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-intron	ENST00000540550	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-intron	ENST00000540550	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
intron-intron	ENST00000540550	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000323833	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000323833	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000323833	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000323833	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000323833	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000323833	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000323833	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000323833	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000323833	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000350762	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000350762	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000350762	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
In-frame	ENST00000350762	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000350762	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000350762	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000350762	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000350762	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
5CDS-intron	ENST00000350762	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-3CDS	ENST00000497617	ENST00000552285		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-3CDS	ENST00000497617	ENST00000315970		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-3CDS	ENST00000497617	ENST00000439210		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-3CDS	ENST00000497617	ENST00000389146		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-intron	ENST00000497617	ENST00000413095		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-intron	ENST00000497617	ENST00000551035		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-intron	ENST00000497617	ENST00000435406		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-intron	ENST00000497617	ENST00000257966		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
3UTR-intron	ENST00000497617	ENST00000389142		TCGA	LD	HNSC	TCGA-CN-5359-01A	TSFM	chr12	58186856	+	OS9	chr12	58089745	+
Frame-shit	ENST00000295640	ENST00000215957		TCGA	LD	HNSC	TCGA-CN-5361-01A	RNPEP	chr1	201973624	+	MICALL1	chr22	38328805	+
5CDS-3UTR	ENST00000295640	ENST00000402631		TCGA	LD	HNSC	TCGA-CN-5361-01A	RNPEP	chr1	201973624	+	MICALL1	chr22	38328805	+
Frame-shit	ENST00000367286	ENST00000215957		TCGA	LD	HNSC	TCGA-CN-5361-01A	RNPEP	chr1	201973624	+	MICALL1	chr22	38328805	+
5CDS-3UTR	ENST00000367286	ENST00000402631		TCGA	LD	HNSC	TCGA-CN-5361-01A	RNPEP	chr1	201973624	+	MICALL1	chr22	38328805	+
3UTR-3CDS	ENST00000471105	ENST00000215957		TCGA	LD	HNSC	TCGA-CN-5361-01A	RNPEP	chr1	201973624	+	MICALL1	chr22	38328805	+
3UTR-3UTR	ENST00000471105	ENST00000402631		TCGA	LD	HNSC	TCGA-CN-5361-01A	RNPEP	chr1	201973624	+	MICALL1	chr22	38328805	+
5CDS-intron	ENST00000373825	ENST00000410534		TCGA	LD	HNSC	TCGA-CN-5361-01A	SRPK1	chr6	35888245	-	SOX2-OT	chr3	181281508	+
5UTR-intron	ENST00000423325	ENST00000410534		TCGA	LD	HNSC	TCGA-CN-5361-01A	SRPK1	chr6	35888245	-	SOX2-OT	chr3	181281508	+
5UTR-intron	ENST00000373822	ENST00000410534		TCGA	LD	HNSC	TCGA-CN-5361-01A	SRPK1	chr6	35888245	-	SOX2-OT	chr3	181281508	+
intron-intron	ENST00000373821	ENST00000410534		TCGA	LD	HNSC	TCGA-CN-5361-01A	SRPK1	chr6	35888245	-	SOX2-OT	chr3	181281508	+
Frame-shit	ENST00000263398	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000263398	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000526025	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000526025	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000449691	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000449691	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000360158	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000360158	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000415148	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000415148	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000437706	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000437706	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000433354	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000433354	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000428726	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000428726	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000526669	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000526669	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000433892	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000433892	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000278386	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000278386	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000434472	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000434472	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
Frame-shit	ENST00000352818	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-3UTR	ENST00000352818	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
intron-3CDS	ENST00000528922	ENST00000299413		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
intron-3UTR	ENST00000528922	ENST00000532066		TCGA	LD	HNSC	TCGA-CN-5363-01A	CD44	chr11	35160917	+	TRIM44	chr11	35747472	+
5CDS-intron	ENST00000398238	ENST00000245865		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000375840		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000392950		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000336174		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000447001		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000582137		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000580039		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000398238	ENST00000579340		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000245865		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000375840		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000392950		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000336174		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000447001		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000582137		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000580039		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000225282	ENST00000579340		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000245865		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000375840		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000392950		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000336174		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000447001		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000582137		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000580039		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
5CDS-intron	ENST00000575068	ENST00000579340		TCGA	LD	HNSC	TCGA-CN-5363-01A	NSF	chr17	44782220	+	STRADA	chr17	61767957	-
Frame-shit	ENST00000377828	ENST00000375771		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000377828	ENST00000375766		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000377828	ENST00000400773		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000377828	ENST00000441801		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000377828	ENST00000332305		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-3UTR	ENST00000377828	ENST00000509138		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000461727	ENST00000375771		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000461727	ENST00000375766		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000461727	ENST00000400773		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000461727	ENST00000441801		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000461727	ENST00000332305		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-3UTR	ENST00000461727	ENST00000509138		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000475228	ENST00000375771		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000475228	ENST00000375766		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
intron-3CDS	ENST00000475228	ENST00000400773		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
intron-intron	ENST00000475228	ENST00000441801		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
intron-intron	ENST00000475228	ENST00000332305		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
intron-3UTR	ENST00000475228	ENST00000509138		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000416731	ENST00000375771		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000416731	ENST00000375766		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
Frame-shit	ENST00000416731	ENST00000400773		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000416731	ENST00000441801		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-intron	ENST00000416731	ENST00000332305		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-3UTR	ENST00000416731	ENST00000509138		TCGA	LD	HNSC	TCGA-CN-5366-01A	ESPN	chr1	6520170	+	FBLIM1	chr1	16111043	+
5CDS-5UTR	ENST00000524892	ENST00000064778		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000524892	ENST00000450446		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000524892	ENST00000356467		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000298815	ENST00000064778		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000298815	ENST00000450446		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000298815	ENST00000356467		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
3UTR-5UTR	ENST00000534060	ENST00000064778		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
3UTR-5UTR	ENST00000534060	ENST00000450446		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
3UTR-5UTR	ENST00000534060	ENST00000356467		TCGA	LD	HNSC	TCGA-CN-5367-01A	ARHGAP42	chr11	100665897	+	FAM168A	chr11	73179537	-
5UTR-3CDS	ENST00000579795	ENST00000338368		TCGA	LD	HNSC	TCGA-CN-5370-01A	FOXN1	chr17	26833461	+	PRKDC	chr8	48697878	-
5UTR-3CDS	ENST00000579795	ENST00000314191		TCGA	LD	HNSC	TCGA-CN-5370-01A	FOXN1	chr17	26833461	+	PRKDC	chr8	48697878	-
5UTR-5UTR	ENST00000579795	ENST00000523565		TCGA	LD	HNSC	TCGA-CN-5370-01A	FOXN1	chr17	26833461	+	PRKDC	chr8	48697878	-
intron-3CDS	ENST00000226247	ENST00000338368		TCGA	LD	HNSC	TCGA-CN-5370-01A	FOXN1	chr17	26833461	+	PRKDC	chr8	48697878	-
intron-3CDS	ENST00000226247	ENST00000314191		TCGA	LD	HNSC	TCGA-CN-5370-01A	FOXN1	chr17	26833461	+	PRKDC	chr8	48697878	-
intron-5UTR	ENST00000226247	ENST00000523565		TCGA	LD	HNSC	TCGA-CN-5370-01A	FOXN1	chr17	26833461	+	PRKDC	chr8	48697878	-
intron-5UTR	ENST00000395169	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395169	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395169	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000395169	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000359221	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000359221	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000359221	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000359221	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
5UTR-5UTR	ENST00000361569	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
5UTR-5UTR	ENST00000361569	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
5UTR-5UTR	ENST00000361569	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
5UTR-intron	ENST00000361569	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395166	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395166	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395166	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000395166	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000449047	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000449047	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000449047	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000449047	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395161	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395161	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395161	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000395161	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000513839	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000513839	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000513839	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000513839	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395157	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395157	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395157	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000395157	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395160	ENST00000509176		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395160	ENST00000333691		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-5UTR	ENST00000395160	ENST00000432775		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000395160	ENST00000504150		TCGA	LD	HNSC	TCGA-CN-6010-01A	MAPK10	chr4	87374183	-	CCSER1	chr4	91229395	+
intron-intron	ENST00000229201	ENST00000311966		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000229201	ENST00000476991		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000229201	ENST00000539272		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000553532	ENST00000311966		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000553532	ENST00000476991		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000553532	ENST00000539272		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000554616	ENST00000311966		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000554616	ENST00000476991		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
intron-intron	ENST00000554616	ENST00000539272		TCGA	LD	HNSC	TCGA-CN-6012-01A	TIMELESS	chr12	56831250	-	GLS2	chr12	56865679	-
5UTR-3CDS	ENST00000427410	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000427410	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000427410	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000427410	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000427410	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000447388	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000447388	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000447388	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000447388	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000447388	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000425457	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000425457	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000425457	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000425457	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000425457	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000456393	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000456393	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000456393	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000456393	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000456393	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000372654	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-3CDS	ENST00000372654	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000372654	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000372654	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5UTR-intron	ENST00000372654	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000372653	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000372653	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372653	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372653	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372653	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000372652	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000372652	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372652	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372652	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372652	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000372651	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000372651	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372651	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372651	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000372651	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000440226	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000440226	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000440226	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000440226	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000440226	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000308733	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000308733	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000308733	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000308733	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000308733	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000483091	ENST00000372621		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-3CDS	ENST00000483091	ENST00000541520		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000483091	ENST00000475060		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000483091	ENST00000543104		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
intron-intron	ENST00000483091	ENST00000372616		TCGA	LD	HNSC	TCGA-CN-6013-01A	NFYC	chr1	41157539	+	CTPS1	chr1	41466701	+
5CDS-intron	ENST00000381227	ENST00000309042		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
5CDS-intron	ENST00000381227	ENST00000514063		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
intron-intron	ENST00000431623	ENST00000309042		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
intron-intron	ENST00000431623	ENST00000514063		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
5CDS-intron	ENST00000441246	ENST00000309042		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
5CDS-intron	ENST00000441246	ENST00000514063		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
5CDS-intron	ENST00000314595	ENST00000309042		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
5CDS-intron	ENST00000314595	ENST00000514063		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
intron-intron	ENST00000510355	ENST00000309042		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
intron-intron	ENST00000510355	ENST00000514063		TCGA	LD	HNSC	TCGA-CN-6013-01A	POLR2B	chr4	57857064	+	REST	chr4	57832822	+
In-frame	ENST00000278317	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000360603	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000381561	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000381549	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000381548	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000381579	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000381589	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000381558	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000397301	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000446240	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
In-frame	ENST00000397304	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
3UTR-3CDS	ENST00000493234	ENST00000225964		TCGA	LD	HNSC	TCGA-CN-6017-01A	TNNT3	chr11	1956115	+	COL1A1	chr17	48275355	-
5UTR-3CDS	ENST00000358767	ENST00000178640		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000358767	ENST00000560591		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000358767	ENST00000395476		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000358767	ENST00000354498		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000358767	ENST00000340972		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-3CDS	ENST00000546225	ENST00000178640		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000546225	ENST00000560591		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000546225	ENST00000395476		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000546225	ENST00000354498		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-intron	ENST00000546225	ENST00000340972		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
In-frame	ENST00000335894	ENST00000178640		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000335894	ENST00000560591		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000335894	ENST00000395476		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000335894	ENST00000354498		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000335894	ENST00000340972		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-3CDS	ENST00000360277	ENST00000178640		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000360277	ENST00000560591		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000360277	ENST00000395476		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000360277	ENST00000354498		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000360277	ENST00000340972		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
In-frame	ENST00000512104	ENST00000178640		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000512104	ENST00000560591		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000512104	ENST00000395476		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000512104	ENST00000354498		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5CDS-intron	ENST00000512104	ENST00000340972		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-3CDS	ENST00000560790	ENST00000178640		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000560790	ENST00000560591		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000560790	ENST00000395476		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000560790	ENST00000354498		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
intron-intron	ENST00000560790	ENST00000340972		TCGA	LD	HNSC	TCGA-CN-6022-01A	IQCH	chr15	67553732	+	MAP2K5	chr15	67985856	+
5UTR-3CDS	ENST00000396113	ENST00000414645		TCGA	LD	HNSC	TCGA-CN-6023-01A	NDUFAF6	chr8	95987643	+	DPY19L4	chr8	95738559	+
intron-3CDS	ENST00000286687	ENST00000414645		TCGA	LD	HNSC	TCGA-CN-6023-01A	NDUFAF6	chr8	95987643	+	DPY19L4	chr8	95738559	+
intron-3CDS	ENST00000396111	ENST00000414645		TCGA	LD	HNSC	TCGA-CN-6023-01A	NDUFAF6	chr8	95987643	+	DPY19L4	chr8	95738559	+
intron-3CDS	ENST00000521840	ENST00000414645		TCGA	LD	HNSC	TCGA-CN-6023-01A	NDUFAF6	chr8	95987643	+	DPY19L4	chr8	95738559	+
intron-3CDS	ENST00000542894	ENST00000414645		TCGA	LD	HNSC	TCGA-CN-6023-01A	NDUFAF6	chr8	95987643	+	DPY19L4	chr8	95738559	+
intron-3CDS	ENST00000396124	ENST00000414645		TCGA	LD	HNSC	TCGA-CN-6023-01A	NDUFAF6	chr8	95987643	+	DPY19L4	chr8	95738559	+
Frame-shit	ENST00000229239	ENST00000535648		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000346706		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000340094		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000345230		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
In-frame	ENST00000229239	ENST00000350763		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000341037		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000423613		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000537320		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000229239	ENST00000542877		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
5CDS-intron	ENST00000229239	ENST00000481475		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000535648		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000346706		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000340094		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000345230		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
In-frame	ENST00000396856	ENST00000350763		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000341037		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000423613		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000537320		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396856	ENST00000542877		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
5CDS-intron	ENST00000396856	ENST00000481475		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000535648		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000346706		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000340094		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000345230		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
In-frame	ENST00000396861	ENST00000350763		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000341037		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000423613		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000537320		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396861	ENST00000542877		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
5CDS-intron	ENST00000396861	ENST00000481475		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000535648		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000346706		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000340094		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000345230		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
In-frame	ENST00000396859	ENST00000350763		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000341037		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000423613		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000537320		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396859	ENST00000542877		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
5CDS-intron	ENST00000396859	ENST00000481475		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000535648		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000346706		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000340094		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000345230		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
In-frame	ENST00000396858	ENST00000350763		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000341037		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000423613		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000537320		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
Frame-shit	ENST00000396858	ENST00000542877		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
5CDS-intron	ENST00000396858	ENST00000481475		TCGA	LD	HNSC	TCGA-CN-6024-01A	GAPDH	chr12	6646176	+	TNC	chr9	117783546	-
In-frame	ENST00000375759	ENST00000329454		TCGA	LD	HNSC	TCGA-CN-6024-01A	SPEN	chr1	16174645	+	C1orf64	chr1	16332414	+
intron-3CDS	ENST00000471538	ENST00000329454		TCGA	LD	HNSC	TCGA-CN-6024-01A	SPEN	chr1	16174645	+	C1orf64	chr1	16332414	+
5UTR-5UTR	ENST00000233143	ENST00000300527		TCGA	LD	HNSC	TCGA-CN-6989-01A	TMSB10	chr2	85132842	+	COL6A2	chr21	47531364	+
5UTR-5UTR	ENST00000233143	ENST00000310645		TCGA	LD	HNSC	TCGA-CN-6989-01A	TMSB10	chr2	85132842	+	COL6A2	chr21	47531364	+
5UTR-5UTR	ENST00000233143	ENST00000357838		TCGA	LD	HNSC	TCGA-CN-6989-01A	TMSB10	chr2	85132842	+	COL6A2	chr21	47531364	+
5UTR-5UTR	ENST00000233143	ENST00000409416		TCGA	LD	HNSC	TCGA-CN-6989-01A	TMSB10	chr2	85132842	+	COL6A2	chr21	47531364	+
5UTR-5UTR	ENST00000233143	ENST00000397763		TCGA	LD	HNSC	TCGA-CN-6989-01A	TMSB10	chr2	85132842	+	COL6A2	chr21	47531364	+
5UTR-intron	ENST00000233143	ENST00000460886		TCGA	LD	HNSC	TCGA-CN-6989-01A	TMSB10	chr2	85132842	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000302550	ENST00000473875		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000302550	ENST00000366534		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000302550	ENST00000366533		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000302550	ENST00000366531		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000263831	ENST00000473875		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000263831	ENST00000366534		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000263831	ENST00000366533		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000263831	ENST00000366531		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
3UTR-intron	ENST00000484738	ENST00000473875		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
3UTR-intron	ENST00000484738	ENST00000366534		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
3UTR-intron	ENST00000484738	ENST00000366533		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
3UTR-intron	ENST00000484738	ENST00000366531		TCGA	LD	HNSC	TCGA-CN-6992-01A	DESI2	chr1	244816657	+	C1orf101	chr1	244798791	+
Frame-shit	ENST00000397786	ENST00000444766		TCGA	LD	HNSC	TCGA-CN-6992-01A	MED13	chr17	60040113	-	INTS2	chr17	59989431	-
Frame-shit	ENST00000397786	ENST00000251334		TCGA	LD	HNSC	TCGA-CN-6992-01A	MED13	chr17	60040113	-	INTS2	chr17	59989431	-
intron-3CDS	ENST00000580896	ENST00000444766		TCGA	LD	HNSC	TCGA-CN-6992-01A	MED13	chr17	60040113	-	INTS2	chr17	59989431	-
intron-3CDS	ENST00000580896	ENST00000251334		TCGA	LD	HNSC	TCGA-CN-6992-01A	MED13	chr17	60040113	-	INTS2	chr17	59989431	-
In-frame	ENST00000396062	ENST00000556036		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
In-frame	ENST00000396062	ENST00000267430		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
In-frame	ENST00000396062	ENST00000542564		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
5CDS-intron	ENST00000396062	ENST00000555013		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
Frame-shit	ENST00000216330	ENST00000556036		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
Frame-shit	ENST00000216330	ENST00000267430		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
Frame-shit	ENST00000216330	ENST00000542564		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
5CDS-intron	ENST00000216330	ENST00000555013		TCGA	LD	HNSC	TCGA-CN-6994-01A	FKBP3	chr14	45598997	-	FANCM	chr14	45618040	+
5UTR-3CDS	ENST00000395680	ENST00000284509		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000395680	ENST00000559829		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-5UTR	ENST00000395680	ENST00000558959		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000395681	ENST00000284509		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000395681	ENST00000559829		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-5UTR	ENST00000395681	ENST00000558959		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000252029	ENST00000284509		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000252029	ENST00000559829		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-5UTR	ENST00000252029	ENST00000558959		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000395678	ENST00000284509		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-3CDS	ENST00000395678	ENST00000559829		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5UTR-5UTR	ENST00000395678	ENST00000558959		TCGA	LD	HNSC	TCGA-CN-6994-01A	TYMP	chr22	50968333	-	ATP8B4	chr15	50279746	-
5CDS-5UTR	ENST00000355303	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000355303	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000355303	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000398543	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000398543	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000398543	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000538023	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000538023	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000538023	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000316296	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000316296	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000316296	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000530676	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000530676	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000530676	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000531349	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000531349	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-5UTR	ENST00000531349	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
intron-5UTR	ENST00000525494	ENST00000445078		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
intron-5UTR	ENST00000525494	ENST00000456237		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
intron-5UTR	ENST00000525494	ENST00000442948		TCGA	LD	HNSC	TCGA-CN-6995-01A	ANO1	chr11	69978185	+	FOLR3	chr11	71846993	+
5CDS-intron	ENST00000315266	ENST00000553974		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000315266	ENST00000555474		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000315266	ENST00000216442		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000315266	ENST00000555431		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000315266	ENST00000554236		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000478722	ENST00000553974		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000478722	ENST00000555474		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000478722	ENST00000216442		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000478722	ENST00000555431		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000478722	ENST00000554236		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000459628	ENST00000553974		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000459628	ENST00000555474		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000459628	ENST00000216442		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000459628	ENST00000555431		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000459628	ENST00000554236		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000543237	ENST00000553974		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000543237	ENST00000555474		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000543237	ENST00000216442		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000543237	ENST00000555431		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000543237	ENST00000554236		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000305960	ENST00000553974		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000305960	ENST00000555474		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000305960	ENST00000216442		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000305960	ENST00000555431		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000305960	ENST00000554236		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
3UTR-intron	ENST00000544752	ENST00000553974		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
3UTR-intron	ENST00000544752	ENST00000555474		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
3UTR-intron	ENST00000544752	ENST00000216442		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
3UTR-intron	ENST00000544752	ENST00000555431		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
3UTR-intron	ENST00000544752	ENST00000554236		TCGA	LD	HNSC	TCGA-CN-A49A-01A	GPHN	chr14	67490392	+	ATP6V1D	chr14	67819757	-
Frame-shit	ENST00000584601	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000406381	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000406381	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000541774	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000541774	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000445658	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000445658	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000540147	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540147	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000584450	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584450	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000269571	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000269571	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000578199	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000578199	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
In-frame	ENST00000540042	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000540042	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000584888	ENST00000346872		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000394189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000439167		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000535189		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000377944		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000377945		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000377952		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000377958		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000346243		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000350532		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000351680		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000467757		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000439016		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584888	ENST00000583368		TCGA	LD	HNSC	TCGA-CN-A49C-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37949186	-
5CDS-5UTR	ENST00000323959	ENST00000335185		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
5CDS-5UTR	ENST00000323959	ENST00000534415		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
5CDS-5UTR	ENST00000323959	ENST00000531481		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000524827	ENST00000335185		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000524827	ENST00000534415		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000524827	ENST00000531481		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000526480	ENST00000335185		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000526480	ENST00000534415		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000526480	ENST00000531481		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000438862	ENST00000335185		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000438862	ENST00000534415		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000438862	ENST00000531481		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000431742	ENST00000335185		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000431742	ENST00000534415		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
intron-5UTR	ENST00000431742	ENST00000531481		TCGA	LD	HNSC	TCGA-CN-A63T-01A	CSTF3	chr11	33112078	-	CCDC73	chr11	32781804	-
5UTR-3CDS	ENST00000491545	ENST00000216225		TCGA	LD	HNSC	TCGA-CN-A63U-01A	SLC25A17	chr22	41188529	-	RBX1	chr22	41363803	+
Frame-shit	ENST00000435456	ENST00000216225		TCGA	LD	HNSC	TCGA-CN-A63U-01A	SLC25A17	chr22	41188529	-	RBX1	chr22	41363803	+
intron-3CDS	ENST00000402844	ENST00000216225		TCGA	LD	HNSC	TCGA-CN-A63U-01A	SLC25A17	chr22	41188529	-	RBX1	chr22	41363803	+
Frame-shit	ENST00000544408	ENST00000216225		TCGA	LD	HNSC	TCGA-CN-A63U-01A	SLC25A17	chr22	41188529	-	RBX1	chr22	41363803	+
intron-3CDS	ENST00000542412	ENST00000216225		TCGA	LD	HNSC	TCGA-CN-A63U-01A	SLC25A17	chr22	41188529	-	RBX1	chr22	41363803	+
5UTR-3CDS	ENST00000560626	ENST00000219689		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
5UTR-intron	ENST00000560626	ENST00000567975		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
5UTR-3CDS	ENST00000558305	ENST00000219689		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
5UTR-intron	ENST00000558305	ENST00000567975		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
5UTR-3CDS	ENST00000567337	ENST00000219689		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
5UTR-intron	ENST00000567337	ENST00000567975		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
intron-3CDS	ENST00000312493	ENST00000219689		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
intron-intron	ENST00000312493	ENST00000567975		TCGA	LD	HNSC	TCGA-CN-A63W-01A	PEAK1	chr15	77712348	-	USP31	chr16	23113784	-
intron-3CDS	ENST00000368748	ENST00000307098		TCGA	LD	HNSC	TCGA-CN-A641-01A	SPRR2G	chr1	153122380	-	SPRR1B	chr1	153004936	+
intron-3CDS	ENST00000368748	ENST00000392661		TCGA	LD	HNSC	TCGA-CN-A641-01A	SPRR2G	chr1	153122380	-	SPRR1B	chr1	153004936	+
5CDS-intron	ENST00000357066	ENST00000585748		TCGA	LD	HNSC	TCGA-CN-A642-01A	MOB3A	chr19	2076810	-	STK11	chr19	1216267	+
5CDS-intron	ENST00000357066	ENST00000326873		TCGA	LD	HNSC	TCGA-CN-A642-01A	MOB3A	chr19	2076810	-	STK11	chr19	1216267	+
intron-intron	ENST00000592143	ENST00000585748		TCGA	LD	HNSC	TCGA-CN-A642-01A	MOB3A	chr19	2076810	-	STK11	chr19	1216267	+
intron-intron	ENST00000592143	ENST00000326873		TCGA	LD	HNSC	TCGA-CN-A642-01A	MOB3A	chr19	2076810	-	STK11	chr19	1216267	+
5CDS-intron	ENST00000592280	ENST00000585748		TCGA	LD	HNSC	TCGA-CN-A642-01A	MOB3A	chr19	2076810	-	STK11	chr19	1216267	+
5CDS-intron	ENST00000592280	ENST00000326873		TCGA	LD	HNSC	TCGA-CN-A642-01A	MOB3A	chr19	2076810	-	STK11	chr19	1216267	+
intron-3CDS	ENST00000540367	ENST00000334134		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68607020	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000376618	ENST00000334134		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68607020	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000265641	ENST00000334134		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68607020	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000539743	ENST00000334134		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68607020	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000537756	ENST00000334134		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68607020	-	FGF3	chr11	69631191	-
intron-3CDS	ENST00000538994	ENST00000334134		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68607020	-	FGF3	chr11	69631191	-
5CDS-intron	ENST00000540367	ENST00000449833		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000409161		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000423696		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000338508		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000409530		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000449116		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000357171		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000540367	ENST00000468619		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000449833		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000409161		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000423696		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000338508		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000409530		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000449116		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000357171		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000376618	ENST00000468619		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000449833		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000409161		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000423696		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000338508		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000409530		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000449116		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000357171		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000265641	ENST00000468619		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000449833		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000409161		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000423696		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000338508		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000409530		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000449116		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000357171		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5CDS-intron	ENST00000539743	ENST00000468619		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000449833		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000409161		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000423696		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000338508		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000409530		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000449116		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000357171		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
5UTR-intron	ENST00000537756	ENST00000468619		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000449833		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000409161		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000423696		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000338508		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000409530		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000449116		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000357171		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
intron-intron	ENST00000538994	ENST00000468619		TCGA	LD	HNSC	TCGA-CQ-5323-01A	CPT1A	chr11	68540733	-	SHANK2	chr11	70885890	-
In-frame	ENST00000311172	ENST00000351960		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000311172	ENST00000358965		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000311172	ENST00000393695		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
5CDS-intron	ENST00000311172	ENST00000543450		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000409314	ENST00000351960		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000409314	ENST00000358965		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000409314	ENST00000393695		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
5CDS-intron	ENST00000409314	ENST00000543450		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000409418	ENST00000351960		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000409418	ENST00000358965		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000409418	ENST00000393695		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
5CDS-intron	ENST00000409418	ENST00000543450		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000458644	ENST00000351960		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000458644	ENST00000358965		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000458644	ENST00000393695		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
5CDS-intron	ENST00000458644	ENST00000543450		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
Frame-shit	ENST00000409853	ENST00000351960		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
Frame-shit	ENST00000409853	ENST00000358965		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
Frame-shit	ENST00000409853	ENST00000393695		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
5CDS-intron	ENST00000409853	ENST00000543450		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
intron-3CDS	ENST00000409263	ENST00000351960		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
intron-3CDS	ENST00000409263	ENST00000358965		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
intron-3CDS	ENST00000409263	ENST00000393695		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
intron-intron	ENST00000409263	ENST00000543450		TCGA	LD	HNSC	TCGA-CQ-5323-01A	FCHSD2	chr11	72600874	-	NUMA1	chr11	71717309	-
In-frame	ENST00000361756	ENST00000253925		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
In-frame	ENST00000361756	ENST00000389547		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5CDS-3UTR	ENST00000361756	ENST00000530548		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
Frame-shit	ENST00000533380	ENST00000253925		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
Frame-shit	ENST00000533380	ENST00000389547		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5CDS-3UTR	ENST00000533380	ENST00000530548		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
Frame-shit	ENST00000393713	ENST00000253925		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
Frame-shit	ENST00000393713	ENST00000389547		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5CDS-3UTR	ENST00000393713	ENST00000530548		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
3UTR-3CDS	ENST00000490867	ENST00000253925		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
3UTR-3CDS	ENST00000490867	ENST00000389547		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
3UTR-3UTR	ENST00000490867	ENST00000530548		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5UTR-3CDS	ENST00000545854	ENST00000253925		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5UTR-3CDS	ENST00000545854	ENST00000389547		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5UTR-3UTR	ENST00000545854	ENST00000530548		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
Frame-shit	ENST00000530137	ENST00000253925		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
Frame-shit	ENST00000530137	ENST00000389547		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
5CDS-3UTR	ENST00000530137	ENST00000530548		TCGA	LD	HNSC	TCGA-CQ-5323-01A	RNF121	chr11	71640170	+	PPFIA1	chr11	70218318	+
In-frame	ENST00000326397	ENST00000448662		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000431808		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000284776		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000437304		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000319471		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000449407		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000355634		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000393528		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000326397	ENST00000418609		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
5CDS-5UTR	ENST00000326397	ENST00000498125		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000448662		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000431808		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000284776		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000437304		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000319471		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000449407		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000355634		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000393528		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000327570	ENST00000418609		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
5CDS-5UTR	ENST00000327570	ENST00000498125		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000448662		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000431808		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000284776		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000437304		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000319471		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000449407		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000355634		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000393528		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000510968	ENST00000418609		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
5CDS-5UTR	ENST00000510968	ENST00000498125		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000448662		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000431808		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000284776		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000437304		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000319471		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000449407		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000355634		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000393528		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000512740	ENST00000418609		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
5CDS-5UTR	ENST00000512740	ENST00000498125		TCGA	LD	HNSC	TCGA-CQ-5326-01A	RWDD4	chr4	184572137	-	SORBS2	chr4	186573882	-
In-frame	ENST00000366794	ENST00000328205		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
In-frame	ENST00000366794	ENST00000366801		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
In-frame	ENST00000366794	ENST00000481685		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000490921	ENST00000328205		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000490921	ENST00000366801		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000490921	ENST00000481685		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366792	ENST00000328205		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366792	ENST00000366801		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366792	ENST00000481685		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366791	ENST00000328205		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366791	ENST00000366801		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366791	ENST00000481685		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366790	ENST00000328205		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366790	ENST00000366801		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000366790	ENST00000481685		TCGA	LD	HNSC	TCGA-CQ-5332-01A	PARP1	chr1	226561927	-	LIN9	chr1	226438620	-
5CDS-intron	ENST00000372484	ENST00000481847		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372484	ENST00000243938		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372484	ENST00000372632		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372484	ENST00000372630		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000354880	ENST00000481847		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000354880	ENST00000243938		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000354880	ENST00000372632		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000354880	ENST00000372630		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000191018	ENST00000481847		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000191018	ENST00000243938		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000191018	ENST00000372632		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000191018	ENST00000372630		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372459	ENST00000481847		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372459	ENST00000243938		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372459	ENST00000372632		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
5CDS-intron	ENST00000372459	ENST00000372630		TCGA	LD	HNSC	TCGA-CQ-6220-01A	CTSA	chr20	44523772	+	WFDC3	chr20	44418584	-
Frame-shit	ENST00000304636	ENST00000316084		TCGA	LD	HNSC	TCGA-CQ-6221-01A	COL3A1	chr2	189870985	+	RPS4X	chrX	71492622	-
5CDS-5UTR	ENST00000304636	ENST00000486733		TCGA	LD	HNSC	TCGA-CQ-6221-01A	COL3A1	chr2	189870985	+	RPS4X	chrX	71492622	-
5CDS-intron	ENST00000304636	ENST00000373626		TCGA	LD	HNSC	TCGA-CQ-6221-01A	COL3A1	chr2	189870985	+	RPS4X	chrX	71492622	-
intron-3CDS	ENST00000317840	ENST00000316084		TCGA	LD	HNSC	TCGA-CQ-6221-01A	COL3A1	chr2	189870985	+	RPS4X	chrX	71492622	-
intron-5UTR	ENST00000317840	ENST00000486733		TCGA	LD	HNSC	TCGA-CQ-6221-01A	COL3A1	chr2	189870985	+	RPS4X	chrX	71492622	-
intron-intron	ENST00000317840	ENST00000373626		TCGA	LD	HNSC	TCGA-CQ-6221-01A	COL3A1	chr2	189870985	+	RPS4X	chrX	71492622	-
5CDS-5UTR	ENST00000517913	ENST00000046794		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-intron	ENST00000517913	ENST00000521416		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-5UTR	ENST00000435422	ENST00000046794		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-intron	ENST00000435422	ENST00000521416		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-5UTR	ENST00000447401	ENST00000046794		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-intron	ENST00000447401	ENST00000521416		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-5UTR	ENST00000337851	ENST00000046794		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5CDS-intron	ENST00000337851	ENST00000521416		TCGA	LD	HNSC	TCGA-CQ-6221-01A	SGCD	chr5	155771687	+	LCP2	chr5	169724729	-
5UTR-3CDS	ENST00000381196	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000381196	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000381196	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000381196	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000381196	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000360074	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000360074	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000360074	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000360074	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000360074	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000537002	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000537002	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000537002	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000537002	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000537002	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000397617	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397617	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397617	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397617	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397617	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000358503	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000358503	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000358503	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000358503	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000358503	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000397611	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397611	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397611	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397611	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397611	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000355233	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000355233	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000355233	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000355233	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000355233	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000356435	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000356435	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000356435	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000356435	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000356435	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000540109	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000540109	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000540109	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000540109	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000540109	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000486161	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000486161	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000486161	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000486161	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000486161	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000397606	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397606	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397606	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397606	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000397606	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-3CDS	ENST00000463477	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000463477	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000463477	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000463477	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
5UTR-5UTR	ENST00000463477	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-3CDS	ENST00000471274	ENST00000293230		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000471274	ENST00000586160		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000471274	ENST00000589342		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000471274	ENST00000590175		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
intron-5UTR	ENST00000471274	ENST00000589145		TCGA	LD	HNSC	TCGA-CQ-6224-01A	PTPRD	chr9	9938507	-	CYGB	chr17	74524693	-
In-frame	ENST00000262325	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
In-frame	ENST00000592545	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
5UTR-3CDS	ENST00000538556	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
In-frame	ENST00000312678	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
In-frame	ENST00000589344	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
In-frame	ENST00000537622	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
intron-3CDS	ENST00000545922	ENST00000267328		TCGA	LD	HNSC	TCGA-CQ-6225-01A	AP2B1	chr17	33921086	+	RAB20	chr13	111176544	-
Frame-shit	ENST00000306796	ENST00000392347		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
Frame-shit	ENST00000306796	ENST00000389641		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000306796	ENST00000392346		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000306796	ENST00000327026		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000306796	ENST00000392343		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
Frame-shit	ENST00000354321	ENST00000392347		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
Frame-shit	ENST00000354321	ENST00000389641		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000354321	ENST00000392346		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000354321	ENST00000327026		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000354321	ENST00000392343		TCGA	LD	HNSC	TCGA-CQ-6225-01A	DUS1L	chr17	80018577	-	CCDC57	chr17	80059742	-
5CDS-5UTR	ENST00000559624	ENST00000563128		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000559624	ENST00000300215		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000559624	ENST00000540029		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000559624	ENST00000441366		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000382727	ENST00000563128		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000382727	ENST00000300215		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000382727	ENST00000540029		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000382727	ENST00000441366		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000263791	ENST00000563128		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000263791	ENST00000300215		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000263791	ENST00000540029		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000263791	ENST00000441366		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000560648	ENST00000563128		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000560648	ENST00000300215		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000560648	ENST00000540029		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000560648	ENST00000441366		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
intron-5UTR	ENST00000559311	ENST00000563128		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
intron-5UTR	ENST00000559311	ENST00000300215		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
intron-5UTR	ENST00000559311	ENST00000540029		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
intron-5UTR	ENST00000559311	ENST00000441366		TCGA	LD	HNSC	TCGA-CQ-6225-01A	EIF2AK4	chr15	40231818	+	EPB42	chr15	43495473	-
5UTR-5UTR	ENST00000356218	ENST00000253354		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
5UTR-intron	ENST00000356218	ENST00000464032		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
3UTR-5UTR	ENST00000557103	ENST00000253354		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
3UTR-intron	ENST00000557103	ENST00000464032		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-5UTR	ENST00000395718	ENST00000253354		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-intron	ENST00000395718	ENST00000464032		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-5UTR	ENST00000344768	ENST00000253354		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-intron	ENST00000344768	ENST00000464032		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-5UTR	ENST00000554167	ENST00000253354		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-intron	ENST00000554167	ENST00000464032		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-5UTR	ENST00000553556	ENST00000253354		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
intron-intron	ENST00000553556	ENST00000464032		TCGA	LD	HNSC	TCGA-CQ-6227-01A	FRMD6	chr14	52037128	+	BPIFB1	chr20	31873839	+
Frame-shit	ENST00000366641	ENST00000366649		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
Frame-shit	ENST00000366641	ENST00000318906		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
Frame-shit	ENST00000366641	ENST00000366651		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
5CDS-5UTR	ENST00000366641	ENST00000471936		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
intron-3CDS	ENST00000476717	ENST00000366649		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
intron-3CDS	ENST00000476717	ENST00000318906		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
intron-3CDS	ENST00000476717	ENST00000366651		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
intron-5UTR	ENST00000476717	ENST00000471936		TCGA	LD	HNSC	TCGA-CQ-6228-01A	EGLN1	chr1	231556744	-	C1orf131	chr1	231374934	-
5UTR-3CDS	ENST00000452400	ENST00000260247		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
5UTR-intron	ENST00000452400	ENST00000531543		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
5UTR-intron	ENST00000452400	ENST00000529076		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
intron-3CDS	ENST00000267974	ENST00000260247		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
intron-intron	ENST00000267974	ENST00000531543		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
intron-intron	ENST00000267974	ENST00000529076		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
intron-3CDS	ENST00000524223	ENST00000260247		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
intron-intron	ENST00000524223	ENST00000531543		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
intron-intron	ENST00000524223	ENST00000529076		TCGA	LD	HNSC	TCGA-CQ-6228-01A	NCOA2	chr8	71315935	-	DCUN1D5	chr11	102954055	-
Frame-shit	ENST00000252599	ENST00000252603		TCGA	LD	HNSC	TCGA-CQ-7067-01A	COLGALT1	chr19	17670230	+	PGLS	chr19	17626982	+
intron-3CDS	ENST00000601354	ENST00000252603		TCGA	LD	HNSC	TCGA-CQ-7067-01A	COLGALT1	chr19	17670230	+	PGLS	chr19	17626982	+
intron-3CDS	ENST00000313349	ENST00000295400		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
intron-3CDS	ENST00000313349	ENST00000445399		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
intron-3CDS	ENST00000313349	ENST00000418333		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
intron-3CDS	ENST00000313349	ENST00000450929		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
intron-3CDS	ENST00000313349	ENST00000444975		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
intron-5UTR	ENST00000313349	ENST00000460808		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5UTR-3CDS	ENST00000476805	ENST00000295400		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5UTR-3CDS	ENST00000476805	ENST00000445399		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5UTR-3CDS	ENST00000476805	ENST00000418333		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5UTR-3CDS	ENST00000476805	ENST00000450929		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5UTR-3CDS	ENST00000476805	ENST00000444975		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5UTR-5UTR	ENST00000476805	ENST00000460808		TCGA	LD	HNSC	TCGA-CQ-7069-01A	SERTAD2	chr2	64977415	-	TGFA	chr2	70692865	-
5CDS-5UTR	ENST00000331925	ENST00000307098		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-intron	ENST00000331925	ENST00000392661		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-5UTR	ENST00000573283	ENST00000307098		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-intron	ENST00000573283	ENST00000392661		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-5UTR	ENST00000575842	ENST00000307098		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-intron	ENST00000575842	ENST00000392661		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-5UTR	ENST00000575087	ENST00000307098		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5CDS-intron	ENST00000575087	ENST00000392661		TCGA	LD	HNSC	TCGA-CQ-7071-01A	ACTG1	chr17	79479258	-	SPRR1B	chr1	153004803	+
5UTR-3CDS	ENST00000407597	ENST00000380861		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000407597	ENST00000454666		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-intron	ENST00000407597	ENST00000466248		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000424279	ENST00000380861		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000424279	ENST00000454666		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-intron	ENST00000424279	ENST00000466248		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000536365	ENST00000380861		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000536365	ENST00000454666		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-intron	ENST00000536365	ENST00000466248		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000380961	ENST00000380861		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000380961	ENST00000454666		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-intron	ENST00000380961	ENST00000466248		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000217964	ENST00000380861		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-3CDS	ENST00000217964	ENST00000454666		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
5UTR-intron	ENST00000217964	ENST00000466248		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
intron-3CDS	ENST00000497555	ENST00000380861		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
intron-3CDS	ENST00000497555	ENST00000454666		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
intron-intron	ENST00000497555	ENST00000466248		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TBL1X	chrX	9469889	+	WWC3	chrX	10058811	+
Frame-shit	ENST00000551577	ENST00000354981		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
Frame-shit	ENST00000551577	ENST00000378003		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
Frame-shit	ENST00000551577	ENST00000355755		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
5CDS-intron	ENST00000551577	ENST00000408042		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
Frame-shit	ENST00000266534	ENST00000354981		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
Frame-shit	ENST00000266534	ENST00000378003		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
Frame-shit	ENST00000266534	ENST00000355755		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
5CDS-intron	ENST00000266534	ENST00000408042		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
In-frame	ENST00000536799	ENST00000354981		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
In-frame	ENST00000536799	ENST00000378003		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
In-frame	ENST00000536799	ENST00000355755		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
5CDS-intron	ENST00000536799	ENST00000408042		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000546978	ENST00000354981		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000546978	ENST00000378003		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000546978	ENST00000355755		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
intron-intron	ENST00000546978	ENST00000408042		TCGA	LD	HNSC	TCGA-CQ-7072-01A	TMEM117	chr12	44338145	+	KIF16B	chr20	16293063	-
intron-3CDS	ENST00000254190	ENST00000312989		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000254190	ENST00000532446		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000254190	ENST00000376745		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-intron	ENST00000254190	ENST00000358239		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-3CDS	ENST00000543813	ENST00000312989		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000543813	ENST00000532446		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000543813	ENST00000376745		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
intron-intron	ENST00000543813	ENST00000358239		TCGA	LD	HNSC	TCGA-CQ-A4C6-01A	CHSY1	chr15	101775460	-	PPP1CA	chr11	67168670	-
5UTR-3CDS	ENST00000602758	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-intron	ENST00000602758	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-3CDS	ENST00000602719	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-intron	ENST00000602719	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
intron-3CDS	ENST00000602583	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
intron-intron	ENST00000602583	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-3CDS	ENST00000602675	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-intron	ENST00000602675	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-3CDS	ENST00000284245	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-intron	ENST00000284245	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-3CDS	ENST00000602914	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-intron	ENST00000602914	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-3CDS	ENST00000602766	ENST00000253457		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5UTR-intron	ENST00000602766	ENST00000435200		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	C16orf74	chr16	85784532	-	EMC8	chr16	85814079	-
5CDS-intron	ENST00000415807	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000415807	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000415807	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000336824	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000336824	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000336824	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000416957	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000416957	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000416957	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000392699	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000392699	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000392699	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000421757	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000421757	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000421757	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000423424	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000423424	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
5CDS-intron	ENST00000423424	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
intron-intron	ENST00000476794	ENST00000307145		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
intron-intron	ENST00000476794	ENST00000560473		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
intron-intron	ENST00000476794	ENST00000500533		TCGA	LD	HNSC	TCGA-CQ-A4C7-01A	FNDC3B	chr3	171851336	+	KLF13	chr15	31727573	+
intron-intron	ENST00000342016	ENST00000397063		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000342016	ENST00000397062		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000342016	ENST00000446151		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000342016	ENST00000464747		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000342016	ENST00000423513		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000362053	ENST00000397063		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000362053	ENST00000397062		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000362053	ENST00000446151		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000362053	ENST00000464747		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
intron-intron	ENST00000362053	ENST00000423513		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	CIR1	chr2	175260329	-	NFE2L2	chr2	178148533	-
Frame-shit	ENST00000350638	ENST00000531120		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
Frame-shit	ENST00000350638	ENST00000524896		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000350638	ENST00000532054		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
Frame-shit	ENST00000379163	ENST00000531120		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
Frame-shit	ENST00000379163	ENST00000524896		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000379163	ENST00000532054		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
Frame-shit	ENST00000395934	ENST00000531120		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
Frame-shit	ENST00000395934	ENST00000524896		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000395934	ENST00000532054		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	ELP4	chr11	31671769	+	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000283148	ENST00000450466		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000283148	ENST00000383233		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000283148	ENST00000542162		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000283148	ENST00000399707		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000283148	ENST00000475185		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000540130	ENST00000450466		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000540130	ENST00000383233		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000540130	ENST00000542162		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000540130	ENST00000399707		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000540130	ENST00000475185		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000409501	ENST00000450466		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000409501	ENST00000383233		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000409501	ENST00000542162		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000409501	ENST00000399707		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5CDS-intron	ENST00000409501	ENST00000475185		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000409032	ENST00000450466		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000409032	ENST00000383233		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000409032	ENST00000542162		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000409032	ENST00000399707		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000409032	ENST00000475185		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000428048	ENST00000450466		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000428048	ENST00000383233		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000428048	ENST00000542162		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000428048	ENST00000399707		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
intron-intron	ENST00000428048	ENST00000475185		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5UTR-intron	ENST00000479621	ENST00000450466		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5UTR-intron	ENST00000479621	ENST00000383233		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5UTR-intron	ENST00000479621	ENST00000542162		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5UTR-intron	ENST00000479621	ENST00000399707		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
5UTR-intron	ENST00000479621	ENST00000475185		TCGA	LD	HNSC	TCGA-CQ-A4C9-01A	UXS1	chr2	106774514	-	TMEM241	chr18	20979611	-
In-frame	ENST00000328432	ENST00000442080		TCGA	LD	HNSC	TCGA-CQ-A4CB-01A	PPP1R2	chr3	195269727	-	GMNC	chr3	190578647	-
5CDS-intron	ENST00000328432	ENST00000479491		TCGA	LD	HNSC	TCGA-CQ-A4CB-01A	PPP1R2	chr3	195269727	-	GMNC	chr3	190578647	-
In-frame	ENST00000401998	ENST00000394903		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000401998	ENST00000338820		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000401998	ENST00000444643		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000401998	ENST00000461919		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000361114	ENST00000394903		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000361114	ENST00000338820		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000361114	ENST00000444643		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000361114	ENST00000461919		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000398761	ENST00000394903		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000398761	ENST00000338820		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000398761	ENST00000444643		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000398761	ENST00000461919		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000418483	ENST00000394903		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000418483	ENST00000338820		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000418483	ENST00000444643		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000418483	ENST00000461919		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000398763	ENST00000394903		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000398763	ENST00000338820		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000398763	ENST00000444643		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
Frame-shit	ENST00000398763	ENST00000461919		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
intron-3CDS	ENST00000604025	ENST00000394903		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
intron-3CDS	ENST00000604025	ENST00000338820		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
intron-3CDS	ENST00000604025	ENST00000444643		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
intron-3CDS	ENST00000604025	ENST00000461919		TCGA	LD	HNSC	TCGA-CQ-A4CG-01A	MICU1	chr10	74234858	-	DNAJB12	chr10	74096454	-
In-frame	ENST00000405015	ENST00000233114		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405015	ENST00000409908		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405015	ENST00000409476		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405015	ENST00000539945		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000405015	ENST00000544381		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000405015	ENST00000394423		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405015	ENST00000462944		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
In-frame	ENST00000431489	ENST00000233114		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000431489	ENST00000409908		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000431489	ENST00000409476		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000431489	ENST00000539945		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000431489	ENST00000544381		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000431489	ENST00000394423		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000431489	ENST00000462944		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
In-frame	ENST00000354487	ENST00000233114		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000354487	ENST00000409908		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000354487	ENST00000409476		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000354487	ENST00000539945		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000354487	ENST00000544381		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000354487	ENST00000394423		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000354487	ENST00000462944		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
In-frame	ENST00000263991	ENST00000233114		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000263991	ENST00000409908		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000263991	ENST00000409476		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000263991	ENST00000539945		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000263991	ENST00000544381		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000263991	ENST00000394423		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000263991	ENST00000462944		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
In-frame	ENST00000405289	ENST00000233114		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405289	ENST00000409908		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405289	ENST00000409476		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405289	ENST00000539945		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000405289	ENST00000544381		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000405289	ENST00000394423		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000405289	ENST00000462944		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-3CDS	ENST00000496857	ENST00000233114		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-intron	ENST00000496857	ENST00000409908		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-intron	ENST00000496857	ENST00000409476		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-intron	ENST00000496857	ENST00000539945		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-5UTR	ENST00000496857	ENST00000544381		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-5UTR	ENST00000496857	ENST00000394423		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
intron-intron	ENST00000496857	ENST00000462944		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	EHBP1	chr2	63101667	+	MDH1	chr2	63821622	+
3UTR-5UTR	ENST00000381166	ENST00000572316		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000381166	ENST00000354968		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000381166	ENST00000393450		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000427855	ENST00000572316		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000427855	ENST00000354968		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000427855	ENST00000393450		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000340738	ENST00000572316		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000340738	ENST00000354968		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
3UTR-5UTR	ENST00000340738	ENST00000393450		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000554301	ENST00000572316		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000554301	ENST00000354968		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000554301	ENST00000393450		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000555445	ENST00000572316		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000555445	ENST00000354968		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000555445	ENST00000393450		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000554314	ENST00000572316		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000554314	ENST00000354968		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000554314	ENST00000393450		TCGA	LD	HNSC	TCGA-CQ-A4CH-01A	PAPLN	chr14	73741167	+	MYL4	chr17	45286755	+
In-frame	ENST00000543155	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000543155	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000543155	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000543155	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000543155	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000543155	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
5CDS-intron	ENST00000543155	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-3CDS	ENST00000542150	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-3CDS	ENST00000542150	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-3CDS	ENST00000542150	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-3CDS	ENST00000542150	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-3CDS	ENST00000542150	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-3CDS	ENST00000542150	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
intron-intron	ENST00000542150	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000229251	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000229251	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000229251	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000229251	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000229251	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000229251	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
5CDS-intron	ENST00000229251	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000539735	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000539735	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000539735	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000539735	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000539735	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000539735	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
5CDS-intron	ENST00000539735	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000538410	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000538410	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000538410	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000538410	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000538410	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000538410	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
5CDS-intron	ENST00000538410	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534947	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534947	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534947	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534947	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534947	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534947	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
5CDS-intron	ENST00000534947	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534877	ENST00000392514		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534877	ENST00000551150		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534877	ENST00000552292		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534877	ENST00000313104		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534877	ENST00000546989		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
In-frame	ENST00000534877	ENST00000228306		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
5CDS-intron	ENST00000534877	ENST00000550296		TCGA	LD	HNSC	TCGA-CR-5243-01A	COPS7A	chr12	6833984	+	RPLP0	chr12	120635265	-
Frame-shit	ENST00000319023	ENST00000398606		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
Frame-shit	ENST00000319023	ENST00000398603		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
5CDS-3UTR	ENST00000319023	ENST00000498765		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000539574	ENST00000398606		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000539574	ENST00000398603		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3UTR	ENST00000539574	ENST00000498765		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000530055	ENST00000398606		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000530055	ENST00000398603		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3UTR	ENST00000530055	ENST00000498765		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000526039	ENST00000398606		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000526039	ENST00000398603		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
intron-3UTR	ENST00000526039	ENST00000498765		TCGA	LD	HNSC	TCGA-CR-5247-01A	NADSYN1	chr11	71169590	+	GSTP1	chr11	67352156	+
5CDS-intron	ENST00000436639	ENST00000368326		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
5CDS-intron	ENST00000436639	ENST00000368325		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
5CDS-intron	ENST00000436639	ENST00000368328		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
intron-intron	ENST00000302071	ENST00000368326		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
intron-intron	ENST00000302071	ENST00000368325		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
intron-intron	ENST00000302071	ENST00000368328		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
intron-intron	ENST00000356644	ENST00000368326		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
intron-intron	ENST00000356644	ENST00000368325		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
intron-intron	ENST00000356644	ENST00000368328		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
5UTR-intron	ENST00000517548	ENST00000368326		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
5UTR-intron	ENST00000517548	ENST00000368325		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
5UTR-intron	ENST00000517548	ENST00000368328		TCGA	LD	HNSC	TCGA-CR-5250-01A	SESN1	chr6	109414998	-	CENPW	chr6	126667351	+
Frame-shit	ENST00000597629	ENST00000582888		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000597629	ENST00000602676		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000597629	ENST00000322297		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000597629	ENST00000583542		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000597629	ENST00000588673		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000248673	ENST00000582888		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000248673	ENST00000602676		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000248673	ENST00000322297		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000248673	ENST00000583542		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000248673	ENST00000588673		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000594045	ENST00000582888		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000594045	ENST00000602676		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000594045	ENST00000322297		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
Frame-shit	ENST00000594045	ENST00000583542		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
In-frame	ENST00000594045	ENST00000588673		TCGA	LD	HNSC	TCGA-CR-5250-01A	ZFP36	chr19	39897568	+	OAZ1	chr19	2271384	+
In-frame	ENST00000376873	ENST00000393020		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000376873	ENST00000529221		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000376873	ENST00000314756		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000376873	ENST00000483239		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
5CDS-3UTR	ENST00000376873	ENST00000478125		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000393020		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000529221		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000314756		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
In-frame	ENST00000299339	ENST00000483239		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
5CDS-3UTR	ENST00000299339	ENST00000478125		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
intron-3CDS	ENST00000376855	ENST00000393020		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
intron-3CDS	ENST00000376855	ENST00000529221		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
intron-3CDS	ENST00000376855	ENST00000314756		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
intron-3CDS	ENST00000376855	ENST00000483239		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
intron-3UTR	ENST00000376855	ENST00000478125		TCGA	LD	HNSC	TCGA-CR-6467-01A	CLDN10	chr13	96229592	+	TTC12	chr11	113220795	+
Frame-shit	ENST00000336273	ENST00000521689		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
Frame-shit	ENST00000336273	ENST00000254898		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
Frame-shit	ENST00000336273	ENST00000524308		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-5UTR	ENST00000336273	ENST00000522025		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-5UTR	ENST00000336273	ENST00000520016		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-intron	ENST00000336273	ENST00000518238		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
Frame-shit	ENST00000519934	ENST00000521689		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
Frame-shit	ENST00000519934	ENST00000254898		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
Frame-shit	ENST00000519934	ENST00000524308		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-5UTR	ENST00000519934	ENST00000522025		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-5UTR	ENST00000519934	ENST00000520016		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-intron	ENST00000519934	ENST00000518238		TCGA	LD	HNSC	TCGA-CR-6467-01A	MTDH	chr8	98657115	+	MATN2	chr8	98973636	+
5CDS-5UTR	ENST00000283943	ENST00000482518		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000283943	ENST00000392054		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000283943	ENST00000409462		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000283943	ENST00000392055		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000283943	ENST00000354069		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000389045	ENST00000482518		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000389045	ENST00000392054		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000389045	ENST00000409462		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000389045	ENST00000392055		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000389045	ENST00000354069		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000389044	ENST00000482518		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000389044	ENST00000392054		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000389044	ENST00000409462		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000389044	ENST00000392055		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000389044	ENST00000354069		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000543084	ENST00000482518		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000543084	ENST00000392054		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000543084	ENST00000409462		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000543084	ENST00000392055		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000543084	ENST00000354069		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000409677	ENST00000482518		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000409677	ENST00000392054		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000409677	ENST00000409462		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000409677	ENST00000392055		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000409677	ENST00000354069		TCGA	LD	HNSC	TCGA-CR-6467-01A	TRIP12	chr2	230744698	-	PID1	chr2	230020680	-
Frame-shit	ENST00000309364	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000309364	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000309364	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000309364	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000309364	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000359180	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000359180	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000359180	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000359180	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000359180	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000317589	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000317589	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000317589	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000317589	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000317589	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000355397	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000355397	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000355397	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000355397	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000355397	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000429027	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000429027	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000429027	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000429027	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000429027	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000539256	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000539256	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000539256	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5UTR-3CDS	ENST00000539256	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5UTR-5UTR	ENST00000539256	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000299275	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000299275	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000299275	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000299275	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000299275	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000538714	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000538714	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000538714	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000538714	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000538714	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000543806	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000543806	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000543806	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000543806	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-5UTR	ENST00000543806	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000424268	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000424268	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000424268	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000424268	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-5UTR	ENST00000424268	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000540972	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000540972	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000540972	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000540972	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000540972	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000510738	ENST00000548249		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000510738	ENST00000537439		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000510738	ENST00000434715		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000510738	ENST00000543672		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
intron-5UTR	ENST00000510738	ENST00000551400		TCGA	LD	HNSC	TCGA-CR-6470-01A	PLEKHA5	chr12	19285384	+	DCTN2	chr12	57929628	-
In-frame	ENST00000366514	ENST00000541742		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
In-frame	ENST00000366514	ENST00000490107		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
In-frame	ENST00000366514	ENST00000388985		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000366514	ENST00000366517		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000366514	ENST00000403792		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
In-frame	ENST00000544618	ENST00000541742		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
In-frame	ENST00000544618	ENST00000490107		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
In-frame	ENST00000544618	ENST00000388985		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000544618	ENST00000366517		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000544618	ENST00000403792		TCGA	LD	HNSC	TCGA-CR-6474-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000476975	ENST00000327896		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000476975	ENST00000417561		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000476975	ENST00000490605		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000476975	ENST00000393526		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000476975	ENST00000470789		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000318357	ENST00000327896		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000318357	ENST00000417561		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000318357	ENST00000490605		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000318357	ENST00000393526		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000318357	ENST00000470789		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000418232	ENST00000327896		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000418232	ENST00000417561		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000418232	ENST00000490605		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000418232	ENST00000393526		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000418232	ENST00000470789		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000331001	ENST00000327896		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000331001	ENST00000417561		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000331001	ENST00000490605		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000331001	ENST00000393526		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000331001	ENST00000470789		TCGA	LD	HNSC	TCGA-CR-6478-01A	ANKRD23	chr2	97523625	-	FAM178B	chr2	97568444	-
3UTR-3CDS	ENST00000462876	ENST00000358204		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
3UTR-intron	ENST00000462876	ENST00000537767		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
3UTR-intron	ENST00000462876	ENST00000393481		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
3UTR-3UTR	ENST00000462876	ENST00000485009		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
In-frame	ENST00000222693	ENST00000358204		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
5CDS-intron	ENST00000222693	ENST00000537767		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
5CDS-intron	ENST00000222693	ENST00000393481		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
5CDS-3UTR	ENST00000222693	ENST00000485009		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
intron-3CDS	ENST00000343213	ENST00000358204		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
intron-intron	ENST00000343213	ENST00000537767		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
intron-intron	ENST00000343213	ENST00000393481		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
intron-3UTR	ENST00000343213	ENST00000485009		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
Frame-shit	ENST00000393480	ENST00000358204		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
5CDS-intron	ENST00000393480	ENST00000537767		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
5CDS-intron	ENST00000393480	ENST00000393481		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
5CDS-3UTR	ENST00000393480	ENST00000485009		TCGA	LD	HNSC	TCGA-CR-6478-01A	CAV2	chr7	116140501	+	TES	chr7	115889074	+
In-frame	ENST00000415930	ENST00000503581		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000415930	ENST00000370621		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000415930	ENST00000370616		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000415930	ENST00000393380		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000415930	ENST00000342421		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000415930	ENST00000370618		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000415930	ENST00000486069		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000356487	ENST00000503581		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000356487	ENST00000370621		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000356487	ENST00000370616		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000356487	ENST00000393380		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000356487	ENST00000342421		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000356487	ENST00000370618		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000356487	ENST00000486069		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000586425	ENST00000503581		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000586425	ENST00000370621		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
In-frame	ENST00000586425	ENST00000370616		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000586425	ENST00000393380		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000586425	ENST00000342421		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000586425	ENST00000370618		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000586425	ENST00000486069		TCGA	LD	HNSC	TCGA-CR-6478-01A	GPI	chr19	34887335	+	EYS	chr6	65767620	-
5UTR-3CDS	ENST00000486765	ENST00000264926		TCGA	LD	HNSC	TCGA-CR-6480-01A	C1orf174	chr1	3809447	-	RAD18	chr3	8923143	-
5UTR-intron	ENST00000486765	ENST00000495087		TCGA	LD	HNSC	TCGA-CR-6480-01A	C1orf174	chr1	3809447	-	RAD18	chr3	8923143	-
In-frame	ENST00000361605	ENST00000264926		TCGA	LD	HNSC	TCGA-CR-6480-01A	C1orf174	chr1	3809447	-	RAD18	chr3	8923143	-
5CDS-intron	ENST00000361605	ENST00000495087		TCGA	LD	HNSC	TCGA-CR-6480-01A	C1orf174	chr1	3809447	-	RAD18	chr3	8923143	-
5UTR-5UTR	ENST00000396000	ENST00000552432		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000396000	ENST00000547379		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000396000	ENST00000549465		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000396000	ENST00000552024		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000396000	ENST00000261187		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000396000	ENST00000543448		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000396000	ENST00000549588		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000262735	ENST00000552432		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000262735	ENST00000547379		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000262735	ENST00000549465		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000262735	ENST00000552024		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000262735	ENST00000261187		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000262735	ENST00000543448		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000262735	ENST00000549588		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000407236	ENST00000552432		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000407236	ENST00000547379		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000407236	ENST00000549465		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-5UTR	ENST00000407236	ENST00000552024		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000407236	ENST00000261187		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000407236	ENST00000543448		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
5UTR-intron	ENST00000407236	ENST00000549588		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000481567	ENST00000552432		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000481567	ENST00000547379		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000481567	ENST00000549465		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000481567	ENST00000552024		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000481567	ENST00000261187		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000481567	ENST00000543448		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000481567	ENST00000549588		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000402126	ENST00000552432		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000402126	ENST00000547379		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000402126	ENST00000549465		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000402126	ENST00000552024		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000402126	ENST00000261187		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000402126	ENST00000543448		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000402126	ENST00000549588		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000434345	ENST00000552432		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000434345	ENST00000547379		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000434345	ENST00000549465		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-5UTR	ENST00000434345	ENST00000552024		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000434345	ENST00000261187		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000434345	ENST00000543448		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
intron-intron	ENST00000434345	ENST00000549588		TCGA	LD	HNSC	TCGA-CR-6480-01A	PPARA	chr22	46547873	+	SLC16A7	chr12	60048933	+
Frame-shit	ENST00000466830	ENST00000383768		TCGA	LD	HNSC	TCGA-CR-6481-01A	CMC1	chr3	28283303	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000466830	ENST00000421010		TCGA	LD	HNSC	TCGA-CR-6481-01A	CMC1	chr3	28283303	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000423894	ENST00000383768		TCGA	LD	HNSC	TCGA-CR-6481-01A	CMC1	chr3	28283303	+	ZCWPW2	chr3	28476601	+
Frame-shit	ENST00000423894	ENST00000421010		TCGA	LD	HNSC	TCGA-CR-6481-01A	CMC1	chr3	28283303	+	ZCWPW2	chr3	28476601	+
intron-3CDS	ENST00000469102	ENST00000383768		TCGA	LD	HNSC	TCGA-CR-6481-01A	CMC1	chr3	28283303	+	ZCWPW2	chr3	28476601	+
intron-3CDS	ENST00000469102	ENST00000421010		TCGA	LD	HNSC	TCGA-CR-6481-01A	CMC1	chr3	28283303	+	ZCWPW2	chr3	28476601	+
intron-3CDS	ENST00000361961	ENST00000390240		TCGA	LD	HNSC	TCGA-CR-6481-01A	KIF21A	chr12	39725532	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000395670	ENST00000390240		TCGA	LD	HNSC	TCGA-CR-6481-01A	KIF21A	chr12	39725532	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000544797	ENST00000390240		TCGA	LD	HNSC	TCGA-CR-6481-01A	KIF21A	chr12	39725532	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000361418	ENST00000390240		TCGA	LD	HNSC	TCGA-CR-6481-01A	KIF21A	chr12	39725532	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000541463	ENST00000390240		TCGA	LD	HNSC	TCGA-CR-6481-01A	KIF21A	chr12	39725532	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000547745	ENST00000390240		TCGA	LD	HNSC	TCGA-CR-6481-01A	KIF21A	chr12	39725532	-	IGKJ3	chr2	89160769	-
Frame-shit	ENST00000225402	ENST00000373094		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
Frame-shit	ENST00000225402	ENST00000373097		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
Frame-shit	ENST00000225402	ENST00000406881		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
Frame-shit	ENST00000225402	ENST00000298274		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
Frame-shit	ENST00000225402	ENST00000361655		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
Frame-shit	ENST00000225402	ENST00000373088		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
5CDS-3UTR	ENST00000225402	ENST00000504220		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
5CDS-intron	ENST00000225402	ENST00000395337		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
5CDS-intron	ENST00000225402	ENST00000361724		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3CDS	ENST00000590321	ENST00000373094		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3CDS	ENST00000590321	ENST00000373097		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3CDS	ENST00000590321	ENST00000406881		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3CDS	ENST00000590321	ENST00000298274		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3CDS	ENST00000590321	ENST00000361655		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3CDS	ENST00000590321	ENST00000373088		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-3UTR	ENST00000590321	ENST00000504220		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-intron	ENST00000590321	ENST00000395337		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
intron-intron	ENST00000590321	ENST00000361724		TCGA	LD	HNSC	TCGA-CR-6488-01A	AATF	chr17	35388982	+	PCDH11X	chrX	91873263	+
Frame-shit	ENST00000338825	ENST00000519416		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
Frame-shit	ENST00000338825	ENST00000520615		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
Frame-shit	ENST00000338825	ENST00000443286		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000520340		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000518415		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000522752		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000348567		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000330691		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000317827		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000379931		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000276520		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000520973		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
5CDS-intron	ENST00000338825	ENST00000520611		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-3CDS	ENST00000520657	ENST00000519416		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-3CDS	ENST00000520657	ENST00000520615		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-3CDS	ENST00000520657	ENST00000443286		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000520340		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000518415		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000522752		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000348567		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000330691		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000317827		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000379931		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000276520		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000520973		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
intron-intron	ENST00000520657	ENST00000520611		TCGA	LD	HNSC	TCGA-CR-7364-01A	EIF4EBP1	chr8	37888236	+	TACC1	chr8	38704217	+
In-frame	ENST00000366514	ENST00000541742		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
In-frame	ENST00000366514	ENST00000490107		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
In-frame	ENST00000366514	ENST00000388985		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000366514	ENST00000366517		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000366514	ENST00000403792		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000544618	ENST00000541742		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000544618	ENST00000490107		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000544618	ENST00000388985		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000544618	ENST00000366517		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000544618	ENST00000403792		TCGA	LD	HNSC	TCGA-CR-7367-01A	TFB2M	chr1	246711847	-	SMYD3	chr1	246093239	-
In-frame	ENST00000310380	ENST00000361828		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000310380	ENST00000361510		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000310380	ENST00000361150		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000310380	ENST00000361715		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000310380	ENST00000361908		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000310380	ENST00000392438		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
5CDS-intron	ENST00000310380	ENST00000487986		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
Frame-shit	ENST00000437101	ENST00000361828		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
Frame-shit	ENST00000437101	ENST00000361510		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
Frame-shit	ENST00000437101	ENST00000361150		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
Frame-shit	ENST00000437101	ENST00000361715		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
Frame-shit	ENST00000437101	ENST00000361908		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
Frame-shit	ENST00000437101	ENST00000392438		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
5CDS-intron	ENST00000437101	ENST00000487986		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000429994	ENST00000361828		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000429994	ENST00000361510		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000429994	ENST00000361150		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000429994	ENST00000361715		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000429994	ENST00000361908		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000429994	ENST00000392438		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
5CDS-intron	ENST00000429994	ENST00000487986		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000355729	ENST00000361828		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000355729	ENST00000361510		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000355729	ENST00000361150		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000355729	ENST00000361715		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000355729	ENST00000361908		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000355729	ENST00000392438		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
5CDS-intron	ENST00000355729	ENST00000487986		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000460582	ENST00000361828		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000460582	ENST00000361510		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000460582	ENST00000361150		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000460582	ENST00000361715		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000460582	ENST00000361908		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000460582	ENST00000392438		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-intron	ENST00000460582	ENST00000487986		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000356740	ENST00000361828		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000356740	ENST00000361510		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000356740	ENST00000361150		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000356740	ENST00000361715		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000356740	ENST00000361908		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-3CDS	ENST00000356740	ENST00000392438		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
intron-intron	ENST00000356740	ENST00000487986		TCGA	LD	HNSC	TCGA-CR-7367-01A	XXYLT1	chr3	194877178	-	OPA1	chr3	193332512	+
In-frame	ENST00000409682	ENST00000283233		TCGA	LD	HNSC	TCGA-CR-7370-01A	PSMD14	chr2	162242082	+	CCDC148	chr2	159077225	-
In-frame	ENST00000409682	ENST00000409187		TCGA	LD	HNSC	TCGA-CR-7370-01A	PSMD14	chr2	162242082	+	CCDC148	chr2	159077225	-
5CDS-intron	ENST00000409682	ENST00000536771		TCGA	LD	HNSC	TCGA-CR-7370-01A	PSMD14	chr2	162242082	+	CCDC148	chr2	159077225	-
5CDS-intron	ENST00000409682	ENST00000409889		TCGA	LD	HNSC	TCGA-CR-7370-01A	PSMD14	chr2	162242082	+	CCDC148	chr2	159077225	-
5CDS-intron	ENST00000409682	ENST00000491563		TCGA	LD	HNSC	TCGA-CR-7370-01A	PSMD14	chr2	162242082	+	CCDC148	chr2	159077225	-
5CDS-5UTR	ENST00000399799	ENST00000294189		TCGA	LD	HNSC	TCGA-CR-7371-01A	ROCK1	chr18	18690779	-	RPL29	chr3	52029896	-
5CDS-intron	ENST00000399799	ENST00000466397		TCGA	LD	HNSC	TCGA-CR-7371-01A	ROCK1	chr18	18690779	-	RPL29	chr3	52029896	-
5CDS-intron	ENST00000399799	ENST00000479017		TCGA	LD	HNSC	TCGA-CR-7371-01A	ROCK1	chr18	18690779	-	RPL29	chr3	52029896	-
5CDS-intron	ENST00000399799	ENST00000495383		TCGA	LD	HNSC	TCGA-CR-7371-01A	ROCK1	chr18	18690779	-	RPL29	chr3	52029896	-
5CDS-intron	ENST00000399799	ENST00000475248		TCGA	LD	HNSC	TCGA-CR-7371-01A	ROCK1	chr18	18690779	-	RPL29	chr3	52029896	-
5CDS-intron	ENST00000399799	ENST00000481629		TCGA	LD	HNSC	TCGA-CR-7371-01A	ROCK1	chr18	18690779	-	RPL29	chr3	52029896	-
In-frame	ENST00000269886	ENST00000600324		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
In-frame	ENST00000269886	ENST00000594605		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
5CDS-intron	ENST00000269886	ENST00000597593		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
In-frame	ENST00000598564	ENST00000600324		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
In-frame	ENST00000598564	ENST00000594605		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
5CDS-intron	ENST00000598564	ENST00000597593		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
In-frame	ENST00000417295	ENST00000600324		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
In-frame	ENST00000417295	ENST00000594605		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
5CDS-intron	ENST00000417295	ENST00000597593		TCGA	LD	HNSC	TCGA-CR-7371-01A	SH3GL1	chr19	4400321	-	STAP2	chr19	4334041	-
intron-intron	ENST00000339438	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000339438	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000339438	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000339438	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000438362	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000438362	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000438362	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000438362	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000358528	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000358528	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000358528	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000358528	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000261443	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000261443	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000261443	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000261443	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000530886	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000530886	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000530886	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000530886	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000369530	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000369530	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000369530	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000369530	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000483407	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000483407	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000483407	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000483407	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000534699	ENST00000512062		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000534699	ENST00000307892		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000534699	ENST00000515314		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-intron	ENST00000534699	ENST00000561792		TCGA	LD	HNSC	TCGA-CR-7374-01A	CSDE1	chr1	115280620	-	CYB5B	chr16	69464057	+
intron-3CDS	ENST00000390237	ENST00000328089		TCGA	LD	HNSC	TCGA-CR-7374-01A	IGKC	chr2	89156768	-	SPSB1	chr1	9416165	+
intron-3CDS	ENST00000390237	ENST00000357898		TCGA	LD	HNSC	TCGA-CR-7374-01A	IGKC	chr2	89156768	-	SPSB1	chr1	9416165	+
intron-3CDS	ENST00000390237	ENST00000377399		TCGA	LD	HNSC	TCGA-CR-7374-01A	IGKC	chr2	89156768	-	SPSB1	chr1	9416165	+
5UTR-3CDS	ENST00000375114	ENST00000237530		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
5UTR-3CDS	ENST00000375114	ENST00000373622		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
5UTR-intron	ENST00000375114	ENST00000470352		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
5UTR-3CDS	ENST00000246194	ENST00000237530		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
5UTR-3CDS	ENST00000246194	ENST00000373622		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
5UTR-intron	ENST00000246194	ENST00000470352		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
intron-3CDS	ENST00000493399	ENST00000237530		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
intron-3CDS	ENST00000493399	ENST00000373622		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
intron-intron	ENST00000493399	ENST00000470352		TCGA	LD	HNSC	TCGA-CR-7374-01A	RALY	chr20	32619410	+	RPN2	chr20	35852281	+
Frame-shit	ENST00000359626	ENST00000359801		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
Frame-shit	ENST00000359626	ENST00000444444		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
5CDS-5UTR	ENST00000359626	ENST00000537284		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
5CDS-5UTR	ENST00000359626	ENST00000608747		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
intron-3CDS	ENST00000491969	ENST00000359801		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
intron-3CDS	ENST00000491969	ENST00000444444		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
intron-5UTR	ENST00000491969	ENST00000537284		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
intron-5UTR	ENST00000491969	ENST00000608747		TCGA	LD	HNSC	TCGA-CR-7374-01A	TYW1	chr7	66660324	+	SIRPB2	chr20	1460710	-
5CDS-5UTR	ENST00000223500	ENST00000450095		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000223500	ENST00000556278		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000223500	ENST00000378842		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-intron	ENST00000223500	ENST00000488412		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000419016	ENST00000450095		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000419016	ENST00000556278		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000419016	ENST00000378842		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
5CDS-intron	ENST00000419016	ENST00000488412		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
intron-5UTR	ENST00000487080	ENST00000450095		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
intron-5UTR	ENST00000487080	ENST00000556278		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
intron-5UTR	ENST00000487080	ENST00000378842		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
intron-intron	ENST00000487080	ENST00000488412		TCGA	LD	HNSC	TCGA-CR-7376-01A	CHMP5	chr9	33276562	+	GALT	chr9	34646674	+
intron-3CDS	ENST00000351266	ENST00000402558		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
intron-intron	ENST00000351266	ENST00000379174		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
intron-intron	ENST00000351266	ENST00000379166		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
intron-intron	ENST00000351266	ENST00000345050		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
5UTR-3CDS	ENST00000378980	ENST00000402558		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
5UTR-intron	ENST00000378980	ENST00000379174		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
5UTR-intron	ENST00000378980	ENST00000379166		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
5UTR-intron	ENST00000378980	ENST00000345050		TCGA	LD	HNSC	TCGA-CR-7376-01A	CNTFR	chr9	34581093	-	KIF24	chr9	34297112	-
Frame-shit	ENST00000379540	ENST00000343259		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000379540	ENST00000378387		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000379540	ENST00000378395		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
5CDS-5UTR	ENST00000379540	ENST00000490970		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000379521	ENST00000343259		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000379521	ENST00000378387		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000379521	ENST00000378395		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
5CDS-5UTR	ENST00000379521	ENST00000490970		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000318524	ENST00000343259		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000318524	ENST00000378387		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000318524	ENST00000378395		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
5CDS-5UTR	ENST00000318524	ENST00000490970		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
intron-3CDS	ENST00000463421	ENST00000343259		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
intron-3CDS	ENST00000463421	ENST00000378387		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
intron-3CDS	ENST00000463421	ENST00000378395		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
intron-5UTR	ENST00000463421	ENST00000490970		TCGA	LD	HNSC	TCGA-CR-7376-01A	NFX1	chr9	33319125	+	ARHGEF39	chr9	35664123	-
Frame-shit	ENST00000396787	ENST00000453597		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
Frame-shit	ENST00000396787	ENST00000335998		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000396787	ENST00000312316		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000396787	ENST00000541010		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000396787	ENST00000454002		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000396787	ENST00000545841		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
Frame-shit	ENST00000378495	ENST00000453597		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
Frame-shit	ENST00000378495	ENST00000335998		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378495	ENST00000312316		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378495	ENST00000541010		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378495	ENST00000454002		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378495	ENST00000545841		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
Frame-shit	ENST00000378496	ENST00000453597		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
Frame-shit	ENST00000378496	ENST00000335998		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378496	ENST00000312316		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378496	ENST00000541010		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378496	ENST00000454002		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
5CDS-5UTR	ENST00000378496	ENST00000545841		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
intron-3CDS	ENST00000481299	ENST00000453597		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
intron-3CDS	ENST00000481299	ENST00000335998		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
intron-5UTR	ENST00000481299	ENST00000312316		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
intron-5UTR	ENST00000481299	ENST00000541010		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
intron-5UTR	ENST00000481299	ENST00000454002		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
intron-5UTR	ENST00000481299	ENST00000545841		TCGA	LD	HNSC	TCGA-CR-7376-01A	UNC13B	chr9	35162302	+	DNAJB5	chr9	34993197	+
Frame-shit	ENST00000543086	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000543086	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000543086	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
5CDS-intron	ENST00000543086	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000546231	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000546231	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000546231	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
5CDS-intron	ENST00000546231	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000397203	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000397203	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000397203	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
5CDS-intron	ENST00000397203	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000360905	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000360905	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000360905	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
5CDS-intron	ENST00000360905	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000589028	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000589028	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000589028	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
5CDS-intron	ENST00000589028	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000355446	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000355446	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
Frame-shit	ENST00000355446	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
5CDS-intron	ENST00000355446	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
3UTR-3CDS	ENST00000536573	ENST00000376070		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
3UTR-3CDS	ENST00000536573	ENST00000376087		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
3UTR-3CDS	ENST00000536573	ENST00000436985		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
3UTR-intron	ENST00000536573	ENST00000466890		TCGA	LD	HNSC	TCGA-CR-7377-01A	ERC1	chr12	1225199	+	ANKRD26	chr10	27294652	-
In-frame	ENST00000357389	ENST00000335288		TCGA	LD	HNSC	TCGA-CR-7379-01A	GAS6	chr13	114549500	-	ATP4B	chr13	114309257	-
In-frame	ENST00000327773	ENST00000335288		TCGA	LD	HNSC	TCGA-CR-7379-01A	GAS6	chr13	114549500	-	ATP4B	chr13	114309257	-
intron-3CDS	ENST00000476291	ENST00000335288		TCGA	LD	HNSC	TCGA-CR-7379-01A	GAS6	chr13	114549500	-	ATP4B	chr13	114309257	-
intron-3CDS	ENST00000418959	ENST00000335288		TCGA	LD	HNSC	TCGA-CR-7379-01A	GAS6	chr13	114549500	-	ATP4B	chr13	114309257	-
intron-3CDS	ENST00000450766	ENST00000335288		TCGA	LD	HNSC	TCGA-CR-7379-01A	GAS6	chr13	114549500	-	ATP4B	chr13	114309257	-
In-frame	ENST00000355761	ENST00000335288		TCGA	LD	HNSC	TCGA-CR-7379-01A	GAS6	chr13	114549500	-	ATP4B	chr13	114309257	-
5CDS-intron	ENST00000253048	ENST00000413379		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
5CDS-intron	ENST00000253048	ENST00000540850		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
5CDS-intron	ENST00000253048	ENST00000598840		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
5CDS-intron	ENST00000253048	ENST00000270225		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
5CDS-intron	ENST00000253048	ENST00000392776		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
intron-intron	ENST00000594019	ENST00000413379		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
intron-intron	ENST00000594019	ENST00000540850		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
intron-intron	ENST00000594019	ENST00000598840		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
intron-intron	ENST00000594019	ENST00000270225		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
intron-intron	ENST00000594019	ENST00000392776		TCGA	LD	HNSC	TCGA-CR-7379-01A	ZC3H4	chr19	47584770	-	SAE1	chr19	47706928	+
5CDS-5UTR	ENST00000299518	ENST00000409568		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5CDS-5UTR	ENST00000299518	ENST00000328828		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5CDS-5UTR	ENST00000558554	ENST00000409568		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5CDS-5UTR	ENST00000558554	ENST00000328828		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5CDS-5UTR	ENST00000559205	ENST00000409568		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5CDS-5UTR	ENST00000559205	ENST00000328828		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5UTR-5UTR	ENST00000441490	ENST00000409568		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5UTR-5UTR	ENST00000441490	ENST00000328828		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
intron-5UTR	ENST00000558535	ENST00000409568		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
intron-5UTR	ENST00000558535	ENST00000328828		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
intron-5UTR	ENST00000561366	ENST00000409568		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
intron-5UTR	ENST00000561366	ENST00000328828		TCGA	LD	HNSC	TCGA-CR-7380-01A	IDH3A	chr15	78441772	+	SH2D7	chr15	78386458	+
5CDS-3UTR	ENST00000446488	ENST00000305885		TCGA	LD	HNSC	TCGA-CR-7382-01A	NFRKB	chr11	129762610	-	FEN1	chr11	61564394	+
5CDS-3UTR	ENST00000304521	ENST00000305885		TCGA	LD	HNSC	TCGA-CR-7382-01A	NFRKB	chr11	129762610	-	FEN1	chr11	61564394	+
5CDS-3UTR	ENST00000524794	ENST00000305885		TCGA	LD	HNSC	TCGA-CR-7382-01A	NFRKB	chr11	129762610	-	FEN1	chr11	61564394	+
5CDS-3UTR	ENST00000524746	ENST00000305885		TCGA	LD	HNSC	TCGA-CR-7382-01A	NFRKB	chr11	129762610	-	FEN1	chr11	61564394	+
5CDS-3UTR	ENST00000526940	ENST00000305885		TCGA	LD	HNSC	TCGA-CR-7382-01A	NFRKB	chr11	129762610	-	FEN1	chr11	61564394	+
In-frame	ENST00000381441	ENST00000454189		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000381441	ENST00000398361		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000381441	ENST00000316715		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000381441	ENST00000493677		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000381441	ENST00000355135		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000381441	ENST00000356942		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
In-frame	ENST00000334635	ENST00000454189		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000334635	ENST00000398361		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000334635	ENST00000316715		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000334635	ENST00000493677		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000334635	ENST00000355135		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000334635	ENST00000356942		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
3UTR-3CDS	ENST00000513800	ENST00000454189		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
3UTR-5UTR	ENST00000513800	ENST00000398361		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
3UTR-5UTR	ENST00000513800	ENST00000316715		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
3UTR-5UTR	ENST00000513800	ENST00000493677		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
3UTR-5UTR	ENST00000513800	ENST00000355135		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
3UTR-5UTR	ENST00000513800	ENST00000356942		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000381437	ENST00000454189		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000381437	ENST00000398361		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000381437	ENST00000316715		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000381437	ENST00000493677		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000381437	ENST00000355135		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000381437	ENST00000356942		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
In-frame	ENST00000451288	ENST00000454189		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000451288	ENST00000398361		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000451288	ENST00000316715		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000451288	ENST00000493677		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000451288	ENST00000355135		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5CDS-5UTR	ENST00000451288	ENST00000356942		TCGA	LD	HNSC	TCGA-CR-7383-01A	DCUN1D4	chr4	52729875	+	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000360540	ENST00000378004		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000360540	ENST00000274498		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-intron	ENST00000360540	ENST00000486650		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
Frame-shit	ENST00000544451	ENST00000378004		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
Frame-shit	ENST00000544451	ENST00000274498		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5CDS-intron	ENST00000544451	ENST00000486650		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000519559	ENST00000378004		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000519559	ENST00000274498		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-intron	ENST00000519559	ENST00000486650		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000522514	ENST00000378004		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000522514	ENST00000274498		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-intron	ENST00000522514	ENST00000486650		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000521344	ENST00000378004		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-3CDS	ENST00000521344	ENST00000274498		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
5UTR-intron	ENST00000521344	ENST00000486650		TCGA	LD	HNSC	TCGA-CR-7383-01A	PCMTD1	chr8	52811490	-	ARHGAP26	chr5	142586763	+
intron-3CDS	ENST00000316881	ENST00000393066		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000316881	ENST00000262294		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000316881	ENST00000376149		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000316881	ENST00000393065		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000316881	ENST00000584889		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-3CDS	ENST00000573108	ENST00000393066		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000573108	ENST00000262294		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000573108	ENST00000376149		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000573108	ENST00000393065		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000573108	ENST00000584889		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-3CDS	ENST00000537230	ENST00000393066		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000537230	ENST00000262294		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000537230	ENST00000376149		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000537230	ENST00000393065		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
intron-intron	ENST00000537230	ENST00000584889		TCGA	LD	HNSC	TCGA-CR-7385-01A	TRIM25	chr17	54969379	-	TRIM37	chr17	57060282	-
5UTR-5UTR	ENST00000561924	ENST00000439040		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
5UTR-5UTR	ENST00000561924	ENST00000256031		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000290858	ENST00000439040		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000290858	ENST00000256031		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000412916	ENST00000439040		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000412916	ENST00000256031		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
intron-5UTR	ENST00000568858	ENST00000439040		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
intron-5UTR	ENST00000568858	ENST00000256031		TCGA	LD	HNSC	TCGA-CR-7388-01A	CBFB	chr16	67063716	+	ATP13A3	chr3	194182965	-
5CDS-5UTR	ENST00000310823	ENST00000360635		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000310823	ENST00000238091		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000310823	ENST00000355346		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-intron	ENST00000310823	ENST00000490426		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000310823	ENST00000359712		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000310823	ENST00000488451		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000310823	ENST00000456913		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000497134	ENST00000360635		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000497134	ENST00000238091		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000497134	ENST00000355346		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-intron	ENST00000497134	ENST00000490426		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000497134	ENST00000359712		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000497134	ENST00000488451		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
5CDS-5UTR	ENST00000497134	ENST00000456913		TCGA	LD	HNSC	TCGA-CR-7389-01A	ADAM17	chr2	9695638	-	ITGB1BP1	chr2	9558861	-
Frame-shit	ENST00000368445	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368445	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368445	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368445	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000368445	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368449	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368449	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368449	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000368449	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000368449	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000448116	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000448116	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000448116	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000448116	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000448116	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368450	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368450	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368450	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368450	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000368450	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368453	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368453	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368453	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
In-frame	ENST00000368453	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000368453	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000606391	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000606391	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000606391	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000606391	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000606391	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
intron-3CDS	ENST00000490667	ENST00000556931		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
intron-3CDS	ENST00000490667	ENST00000505139		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
intron-3CDS	ENST00000490667	ENST00000368408		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
intron-3CDS	ENST00000490667	ENST00000418360		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
intron-intron	ENST00000490667	ENST00000498667		TCGA	LD	HNSC	TCGA-CR-7390-01A	SHC1	chr1	154938019	-	EFNA3	chr1	155057567	+
Frame-shit	ENST00000297423	ENST00000370189		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000297423	ENST00000529992		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000297423	ENST00000306121		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
5CDS-intron	ENST00000297423	ENST00000473868		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000518074	ENST00000370189		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000518074	ENST00000529992		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000518074	ENST00000306121		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
5CDS-intron	ENST00000518074	ENST00000473868		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000541342	ENST00000370189		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000541342	ENST00000529992		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000541342	ENST00000306121		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
5CDS-intron	ENST00000541342	ENST00000473868		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
3UTR-3CDS	ENST00000521214	ENST00000370189		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
3UTR-3CDS	ENST00000521214	ENST00000529992		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
3UTR-3CDS	ENST00000521214	ENST00000306121		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
3UTR-intron	ENST00000521214	ENST00000473868		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000517693	ENST00000370189		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000517693	ENST00000529992		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000517693	ENST00000306121		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
5CDS-intron	ENST00000517693	ENST00000473868		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
intron-3CDS	ENST00000518060	ENST00000370189		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
intron-3CDS	ENST00000518060	ENST00000529992		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
intron-3CDS	ENST00000518060	ENST00000306121		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
intron-intron	ENST00000518060	ENST00000473868		TCGA	LD	HNSC	TCGA-CR-7390-01A	SPIDR	chr8	48626203	+	SNX7	chr1	99225610	+
5CDS-intron	ENST00000437600	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000437600	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000437600	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000437600	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292538	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292538	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292538	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292538	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000393824	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000393824	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000393824	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000393824	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000547394	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000547394	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000547394	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000547394	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000360264	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000360264	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000360264	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000360264	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000425244	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000425244	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000425244	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000425244	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292535	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292535	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292535	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000292535	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000549414	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000549414	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000549414	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000549414	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000556210	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000556210	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000556210	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000556210	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000550008	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000550008	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000550008	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000550008	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000546411	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000546411	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000546411	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
5CDS-intron	ENST00000546411	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
3UTR-intron	ENST00000560541	ENST00000462876		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
3UTR-intron	ENST00000560541	ENST00000222693		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
3UTR-intron	ENST00000560541	ENST00000343213		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
3UTR-intron	ENST00000560541	ENST00000393480		TCGA	LD	HNSC	TCGA-CR-7392-01A	CUX1	chr7	101758553	+	CAV2	chr7	115956486	+
In-frame	ENST00000370888	ENST00000514921		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370888	ENST00000274897		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370888	ENST00000370877		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370888	ENST00000509997		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370888	ENST00000370876		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
5CDS-3UTR	ENST00000370888	ENST00000511744		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
5CDS-3UTR	ENST00000370888	ENST00000358276		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
5CDS-3UTR	ENST00000370888	ENST00000502396		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370882	ENST00000514921		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370882	ENST00000274897		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370882	ENST00000370877		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370882	ENST00000509997		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
In-frame	ENST00000370882	ENST00000370876		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
5CDS-3UTR	ENST00000370882	ENST00000511744		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
5CDS-3UTR	ENST00000370882	ENST00000358276		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
5CDS-3UTR	ENST00000370882	ENST00000502396		TCGA	LD	HNSC	TCGA-CR-7392-01A	LRRC1	chr6	53660213	+	MLIP	chr6	53989271	+
Frame-shit	ENST00000315872	ENST00000449576		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
Frame-shit	ENST00000315872	ENST00000396099		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
Frame-shit	ENST00000315872	ENST00000425416		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-5UTR	ENST00000315872	ENST00000256720		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000315872	ENST00000396097		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000315872	ENST00000404113		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000315872	ENST00000464517		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000315872	ENST00000396098		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-3CDS	ENST00000462366	ENST00000449576		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-3CDS	ENST00000462366	ENST00000396099		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-3CDS	ENST00000462366	ENST00000425416		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-5UTR	ENST00000462366	ENST00000256720		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-intron	ENST00000462366	ENST00000396097		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-intron	ENST00000462366	ENST00000404113		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-intron	ENST00000462366	ENST00000464517		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
intron-intron	ENST00000462366	ENST00000396098		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
Frame-shit	ENST00000401753	ENST00000449576		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
Frame-shit	ENST00000401753	ENST00000396099		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
Frame-shit	ENST00000401753	ENST00000425416		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-5UTR	ENST00000401753	ENST00000256720		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000401753	ENST00000396097		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000401753	ENST00000404113		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000401753	ENST00000464517		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5CDS-intron	ENST00000401753	ENST00000396098		TCGA	LD	HNSC	TCGA-CR-7392-01A	ROCK2	chr2	11332274	-	LPIN1	chr2	11905659	+
5UTR-3CDS	ENST00000378609	ENST00000341426		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000378609	ENST00000341991		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000378609	ENST00000378625		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000378609	ENST00000344463		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000378609	ENST00000492768		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000378609	ENST00000342348		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000341426		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000341991		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000378625		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-3CDS	ENST00000472614	ENST00000344463		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000472614	ENST00000492768		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
5UTR-5UTR	ENST00000472614	ENST00000342348		TCGA	LD	HNSC	TCGA-CR-7395-01A	GNB1	chr1	1822259	-	NADK	chr1	1688749	-
Frame-shit	ENST00000374864	ENST00000360314		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000374864	ENST00000371336		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000374864	ENST00000434344		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000535650	ENST00000360314		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000535650	ENST00000371336		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000535650	ENST00000434344		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000262650	ENST00000360314		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000262650	ENST00000371336		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000262650	ENST00000434344		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
intron-3CDS	ENST00000483727	ENST00000360314		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
intron-3CDS	ENST00000483727	ENST00000371336		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
intron-3CDS	ENST00000483727	ENST00000434344		TCGA	LD	HNSC	TCGA-CR-7397-01A	ITCH	chr20	33012331	+	CASS4	chr20	55020956	+
In-frame	ENST00000554659	ENST00000329153		TCGA	LD	HNSC	TCGA-CR-7399-01A	VTI1B	chr14	68123133	-	PLEKHH1	chr14	68052285	+
In-frame	ENST00000554659	ENST00000417684		TCGA	LD	HNSC	TCGA-CR-7399-01A	VTI1B	chr14	68123133	-	PLEKHH1	chr14	68052285	+
5CDS-intron	ENST00000554659	ENST00000559832		TCGA	LD	HNSC	TCGA-CR-7399-01A	VTI1B	chr14	68123133	-	PLEKHH1	chr14	68052285	+
In-frame	ENST00000261590	ENST00000308128		TCGA	LD	HNSC	TCGA-CR-7402-01A	DSG2	chr18	29121277	+	DSG4	chr18	28979235	+
In-frame	ENST00000261590	ENST00000359747		TCGA	LD	HNSC	TCGA-CR-7402-01A	DSG2	chr18	29121277	+	DSG4	chr18	28979235	+
intron-3CDS	ENST00000585206	ENST00000308128		TCGA	LD	HNSC	TCGA-CR-7402-01A	DSG2	chr18	29121277	+	DSG4	chr18	28979235	+
intron-3CDS	ENST00000585206	ENST00000359747		TCGA	LD	HNSC	TCGA-CR-7402-01A	DSG2	chr18	29121277	+	DSG4	chr18	28979235	+
Frame-shit	ENST00000368407	ENST00000368433		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
Frame-shit	ENST00000368407	ENST00000315144		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
Frame-shit	ENST00000368407	ENST00000368432		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368407	ENST00000368431		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368407	ENST00000292180		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368407	ENST00000487371		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368407	ENST00000405236		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368407	ENST00000295530		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-5UTR	ENST00000368407	ENST00000368428		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
Frame-shit	ENST00000368406	ENST00000368433		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
Frame-shit	ENST00000368406	ENST00000315144		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
Frame-shit	ENST00000368406	ENST00000368432		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368406	ENST00000368431		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368406	ENST00000292180		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368406	ENST00000487371		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368406	ENST00000405236		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-intron	ENST00000368406	ENST00000295530		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
5CDS-5UTR	ENST00000368406	ENST00000368428		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-3CDS	ENST00000469878	ENST00000368433		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-3CDS	ENST00000469878	ENST00000315144		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-3CDS	ENST00000469878	ENST00000368432		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-intron	ENST00000469878	ENST00000368431		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-intron	ENST00000469878	ENST00000292180		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-intron	ENST00000469878	ENST00000487371		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-intron	ENST00000469878	ENST00000405236		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-intron	ENST00000469878	ENST00000295530		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
3UTR-5UTR	ENST00000469878	ENST00000368428		TCGA	LD	HNSC	TCGA-CR-7404-01A	EFNA1	chr1	155100545	+	FLAD1	chr1	154962036	+
Frame-shit	ENST00000338154	ENST00000545604		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338154	ENST00000540354		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338154	ENST00000381552		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338154	ENST00000266509		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000338154	ENST00000535609		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000338154	ENST00000545102		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000357988	ENST00000545604		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000357988	ENST00000540354		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000357988	ENST00000381552		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000357988	ENST00000266509		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000357988	ENST00000535609		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000357988	ENST00000545102		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338946	ENST00000545604		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338946	ENST00000540354		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338946	ENST00000381552		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000338946	ENST00000266509		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000338946	ENST00000535609		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000338946	ENST00000545102		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000322659	ENST00000545604		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000322659	ENST00000540354		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000322659	ENST00000381552		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
Frame-shit	ENST00000322659	ENST00000266509		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000322659	ENST00000535609		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
5CDS-intron	ENST00000322659	ENST00000545102		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
intron-3CDS	ENST00000462182	ENST00000545604		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
intron-3CDS	ENST00000462182	ENST00000540354		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
intron-3CDS	ENST00000462182	ENST00000381552		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
intron-3CDS	ENST00000462182	ENST00000266509		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
intron-intron	ENST00000462182	ENST00000535609		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
intron-intron	ENST00000462182	ENST00000545102		TCGA	LD	HNSC	TCGA-CV-5430-01A	PHF8	chrX	54048692	-	SLCO1C1	chr12	20870066	+
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	HNSC	TCGA-CV-5431-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000583610	ENST00000378449		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000583610	ENST00000433649		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000583610	ENST00000268876		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000583610	ENST00000394570		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000583610	ENST00000591048		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000394294	ENST00000378449		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000394294	ENST00000433649		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000394294	ENST00000268876		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000394294	ENST00000394570		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000394294	ENST00000591048		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000264658	ENST00000378449		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000264658	ENST00000433649		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000264658	ENST00000268876		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000264658	ENST00000394570		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
In-frame	ENST00000264658	ENST00000591048		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
intron-3CDS	ENST00000577399	ENST00000378449		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
intron-3CDS	ENST00000577399	ENST00000433649		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
intron-3CDS	ENST00000577399	ENST00000268876		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
intron-3CDS	ENST00000577399	ENST00000394570		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
intron-3CDS	ENST00000577399	ENST00000591048		TCGA	LD	HNSC	TCGA-CV-5431-01A	FBXL20	chr17	37557614	-	UNC45B	chr17	33498341	+
5CDS-5UTR	ENST00000393359	ENST00000431197		TCGA	LD	HNSC	TCGA-CV-5431-01A	TGFBRAP1	chr2	105912813	-	CCDC146	chr7	76866264	+
5CDS-5UTR	ENST00000393359	ENST00000285871		TCGA	LD	HNSC	TCGA-CV-5431-01A	TGFBRAP1	chr2	105912813	-	CCDC146	chr7	76866264	+
5CDS-intron	ENST00000393359	ENST00000415740		TCGA	LD	HNSC	TCGA-CV-5431-01A	TGFBRAP1	chr2	105912813	-	CCDC146	chr7	76866264	+
5CDS-5UTR	ENST00000258449	ENST00000431197		TCGA	LD	HNSC	TCGA-CV-5431-01A	TGFBRAP1	chr2	105912813	-	CCDC146	chr7	76866264	+
5CDS-5UTR	ENST00000258449	ENST00000285871		TCGA	LD	HNSC	TCGA-CV-5431-01A	TGFBRAP1	chr2	105912813	-	CCDC146	chr7	76866264	+
5CDS-intron	ENST00000258449	ENST00000415740		TCGA	LD	HNSC	TCGA-CV-5431-01A	TGFBRAP1	chr2	105912813	-	CCDC146	chr7	76866264	+
In-frame	ENST00000232375	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000232375	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5CDS-intron	ENST00000232375	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000536104	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000536104	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5CDS-intron	ENST00000536104	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000416568	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000416568	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5CDS-intron	ENST00000416568	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
Frame-shit	ENST00000541519	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
Frame-shit	ENST00000541519	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5CDS-intron	ENST00000541519	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000383734	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
In-frame	ENST00000383734	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5CDS-intron	ENST00000383734	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5UTR-3CDS	ENST00000490115	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5UTR-3CDS	ENST00000490115	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
5UTR-intron	ENST00000490115	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
intron-3CDS	ENST00000545984	ENST00000454817		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
intron-3CDS	ENST00000545984	ENST00000328333		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
intron-intron	ENST00000545984	ENST00000470076		TCGA	LD	HNSC	TCGA-CV-5432-01A	PFKFB4	chr3	48559419	-	COL7A1	chr3	48608711	-
Frame-shit	ENST00000407008	ENST00000345365		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000407008	ENST00000394589		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000407008	ENST00000360276		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000407008	ENST00000335858		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000407008	ENST00000590016		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000407008	ENST00000460118		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
5CDS-5UTR	ENST00000407008	ENST00000590380		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
5CDS-intron	ENST00000407008	ENST00000357906		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000345365		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000394589		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000360276		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000335858		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000590016		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000460118		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-5UTR	ENST00000583517	ENST00000590380		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
3UTR-intron	ENST00000583517	ENST00000357906		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000345365		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000394589		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000360276		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000335858		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000590016		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000460118		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
5CDS-5UTR	ENST00000582037	ENST00000590380		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
5CDS-intron	ENST00000582037	ENST00000357906		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51D	chr17	33433500	-
Frame-shit	ENST00000407008	ENST00000593039		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51L3-RFFL	chr17	33433500	-
3UTR-3CDS	ENST00000583517	ENST00000593039		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51L3-RFFL	chr17	33433500	-
Frame-shit	ENST00000582037	ENST00000593039		TCGA	LD	HNSC	TCGA-CV-5434-01A	NLK	chr17	26370357	+	RAD51L3-RFFL	chr17	33433500	-
Frame-shit	ENST00000242057	ENST00000262067		TCGA	LD	HNSC	TCGA-CV-5436-01A	AHR	chr7	17349747	+	TSPAN13	chr7	16823042	+
5CDS-intron	ENST00000242057	ENST00000466195		TCGA	LD	HNSC	TCGA-CV-5436-01A	AHR	chr7	17349747	+	TSPAN13	chr7	16823042	+
intron-3CDS	ENST00000492120	ENST00000262067		TCGA	LD	HNSC	TCGA-CV-5436-01A	AHR	chr7	17349747	+	TSPAN13	chr7	16823042	+
intron-intron	ENST00000492120	ENST00000466195		TCGA	LD	HNSC	TCGA-CV-5436-01A	AHR	chr7	17349747	+	TSPAN13	chr7	16823042	+
Frame-shit	ENST00000334534	ENST00000328041		TCGA	LD	HNSC	TCGA-CV-5436-01A	SLX4IP	chr20	10438879	+	SLC24A3	chr20	19261603	+
In-frame	ENST00000307179	ENST00000324324		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000307179	ENST00000267836		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
5CDS-intron	ENST00000307179	ENST00000557868		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000433963	ENST00000324324		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000433963	ENST00000267836		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
5CDS-intron	ENST00000433963	ENST00000557868		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000396444	ENST00000324324		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000396444	ENST00000267836		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
5CDS-intron	ENST00000396444	ENST00000557868		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000425032	ENST00000324324		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000425032	ENST00000267836		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
5CDS-intron	ENST00000425032	ENST00000557868		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
intron-3CDS	ENST00000558892	ENST00000324324		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
intron-3CDS	ENST00000558892	ENST00000267836		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
intron-intron	ENST00000558892	ENST00000557868		TCGA	LD	HNSC	TCGA-CV-5440-01A	USP8	chr15	50782722	+	MYEF2	chr15	48461036	-
In-frame	ENST00000381341	ENST00000295966		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
In-frame	ENST00000381341	ENST00000482387		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
5CDS-intron	ENST00000381341	ENST00000472469		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
5CDS-intron	ENST00000381341	ENST00000491845		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
5CDS-intron	ENST00000381341	ENST00000478363		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
In-frame	ENST00000233084	ENST00000295966		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
In-frame	ENST00000233084	ENST00000482387		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
5CDS-intron	ENST00000233084	ENST00000472469		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
5CDS-intron	ENST00000233084	ENST00000491845		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
5CDS-intron	ENST00000233084	ENST00000478363		TCGA	LD	HNSC	TCGA-CV-5441-01A	DDX1	chr2	15736887	+	C3orf67	chr3	58792182	-
3UTR-intron	ENST00000263946	ENST00000540235		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-3UTR	ENST00000263946	ENST00000393930		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-3UTR	ENST00000263946	ENST00000393931		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-3UTR	ENST00000263946	ENST00000310706		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-intron	ENST00000367324	ENST00000540235		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-3UTR	ENST00000367324	ENST00000393930		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-3UTR	ENST00000367324	ENST00000393931		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
3UTR-3UTR	ENST00000367324	ENST00000310706		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-intron	ENST00000352845	ENST00000540235		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-3UTR	ENST00000352845	ENST00000393930		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-3UTR	ENST00000352845	ENST00000393931		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-3UTR	ENST00000352845	ENST00000310706		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-intron	ENST00000475988	ENST00000540235		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-3UTR	ENST00000475988	ENST00000393930		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-3UTR	ENST00000475988	ENST00000393931		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
intron-3UTR	ENST00000475988	ENST00000310706		TCGA	LD	HNSC	TCGA-CV-5442-01A	PKP1	chr1	201302031	+	JUP	chr17	39911426	-
5CDS-5UTR	ENST00000223864	ENST00000381573		TCGA	LD	HNSC	TCGA-CV-5443-01A	PLGRKT	chr9	5431897	-	CD274	chr9	5456100	+
5CDS-5UTR	ENST00000223864	ENST00000381577		TCGA	LD	HNSC	TCGA-CV-5443-01A	PLGRKT	chr9	5431897	-	CD274	chr9	5456100	+
5CDS-intron	ENST00000223864	ENST00000498261		TCGA	LD	HNSC	TCGA-CV-5443-01A	PLGRKT	chr9	5431897	-	CD274	chr9	5456100	+
5UTR-5UTR	ENST00000482696	ENST00000381573		TCGA	LD	HNSC	TCGA-CV-5443-01A	PLGRKT	chr9	5431897	-	CD274	chr9	5456100	+
5UTR-5UTR	ENST00000482696	ENST00000381577		TCGA	LD	HNSC	TCGA-CV-5443-01A	PLGRKT	chr9	5431897	-	CD274	chr9	5456100	+
5UTR-intron	ENST00000482696	ENST00000498261		TCGA	LD	HNSC	TCGA-CV-5443-01A	PLGRKT	chr9	5431897	-	CD274	chr9	5456100	+
In-frame	ENST00000251527	ENST00000361727		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
5CDS-intron	ENST00000251527	ENST00000538075		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
5CDS-intron	ENST00000251527	ENST00000463592		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-3CDS	ENST00000497111	ENST00000361727		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000497111	ENST00000538075		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000497111	ENST00000463592		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-3CDS	ENST00000435514	ENST00000361727		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000435514	ENST00000538075		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000435514	ENST00000463592		TCGA	LD	HNSC	TCGA-CV-5444-01A	ESYT2	chr7	158540885	-	CNTNAP2	chr7	146740999	+
intron-intron	ENST00000536668	ENST00000523102		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000536668	ENST00000524270		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000536668	ENST00000519357		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000536668	ENST00000437851		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000544994	ENST00000523102		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000544994	ENST00000524270		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000544994	ENST00000519357		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000544994	ENST00000437851		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000228811	ENST00000523102		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000228811	ENST00000524270		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000228811	ENST00000519357		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000228811	ENST00000437851		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000540107	ENST00000523102		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000540107	ENST00000524270		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000540107	ENST00000519357		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000540107	ENST00000437851		TCGA	LD	HNSC	TCGA-CV-5444-01A	PRR4	chr12	11273609	-	SPSB2	chr12	6991451	-
In-frame	ENST00000357701	ENST00000373960		TCGA	LD	HNSC	TCGA-CV-5971-01A	MYBPC2	chr19	50955260	+	DES	chr2	220286062	+
5CDS-5UTR	ENST00000341376	ENST00000373161		TCGA	LD	HNSC	TCGA-CV-5973-01A	NFYA	chr6	41062236	+	TSPO2	chr6	41010705	+
5CDS-5UTR	ENST00000341376	ENST00000373158		TCGA	LD	HNSC	TCGA-CV-5973-01A	NFYA	chr6	41062236	+	TSPO2	chr6	41010705	+
5CDS-5UTR	ENST00000341376	ENST00000470917		TCGA	LD	HNSC	TCGA-CV-5973-01A	NFYA	chr6	41062236	+	TSPO2	chr6	41010705	+
5CDS-5UTR	ENST00000353205	ENST00000373161		TCGA	LD	HNSC	TCGA-CV-5973-01A	NFYA	chr6	41062236	+	TSPO2	chr6	41010705	+
5CDS-5UTR	ENST00000353205	ENST00000373158		TCGA	LD	HNSC	TCGA-CV-5973-01A	NFYA	chr6	41062236	+	TSPO2	chr6	41010705	+
5CDS-5UTR	ENST00000353205	ENST00000470917		TCGA	LD	HNSC	TCGA-CV-5973-01A	NFYA	chr6	41062236	+	TSPO2	chr6	41010705	+
intron-3CDS	ENST00000541478	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000541478	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
intron-3CDS	ENST00000541478	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000535715	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000535715	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000535715	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000422031	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000422031	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000422031	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000428192	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000428192	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000428192	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000538426	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000538426	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000538426	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000543004	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000543004	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000543004	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
3UTR-3CDS	ENST00000536443	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
3UTR-3CDS	ENST00000536443	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
3UTR-3CDS	ENST00000536443	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000543988	ENST00000528057		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000543988	ENST00000334205		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
In-frame	ENST00000543988	ENST00000294261		TCGA	LD	HNSC	TCGA-CV-5973-01A	OTUB1	chr11	63756224	+	RPS6KA4	chr11	64132773	+
intron-intron	ENST00000302386	ENST00000391950		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000302386	ENST00000389167		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000302386	ENST00000380728		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000577035	ENST00000391950		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000577035	ENST00000389167		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000577035	ENST00000380728		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000571129	ENST00000391950		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000571129	ENST00000389167		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000571129	ENST00000380728		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000571253	ENST00000391950		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000571253	ENST00000389167		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000571253	ENST00000380728		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000573928	ENST00000391950		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000573928	ENST00000389167		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
intron-intron	ENST00000573928	ENST00000380728		TCGA	LD	HNSC	TCGA-CV-5979-01A	GABARAP	chr17	7144743	-	GPS2	chr17	7217978	-
5CDS-5UTR	ENST00000361565	ENST00000367306		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5CDS-5UTR	ENST00000361565	ENST00000340006		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5CDS-5UTR	ENST00000361565	ENST00000531916		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5CDS-5UTR	ENST00000361565	ENST00000532460		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5CDS-5UTR	ENST00000361565	ENST00000533432		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5CDS-5UTR	ENST00000361565	ENST00000526723		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5CDS-5UTR	ENST00000361565	ENST00000458271		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000367306		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000340006		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000531916		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000532460		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000533432		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000526723		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
intron-5UTR	ENST00000464348	ENST00000458271		TCGA	LD	HNSC	TCGA-CV-5979-01A	IPO9	chr1	201840455	+	CSRP1	chr1	201465432	-
5UTR-3CDS	ENST00000375114	ENST00000375687		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-3UTR	ENST00000375114	ENST00000542461		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-intron	ENST00000375114	ENST00000375689		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-intron	ENST00000375114	ENST00000306058		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-3UTR	ENST00000375114	ENST00000470145		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-3CDS	ENST00000246194	ENST00000375687		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-3UTR	ENST00000246194	ENST00000542461		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-intron	ENST00000246194	ENST00000375689		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-intron	ENST00000246194	ENST00000306058		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
5UTR-3UTR	ENST00000246194	ENST00000470145		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
intron-3CDS	ENST00000493399	ENST00000375687		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000493399	ENST00000542461		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
intron-intron	ENST00000493399	ENST00000375689		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
intron-intron	ENST00000493399	ENST00000306058		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000493399	ENST00000470145		TCGA	LD	HNSC	TCGA-CV-6433-01A	RALY	chr20	32619410	+	ASXL1	chr20	31015931	+
In-frame	ENST00000371378	ENST00000371429		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000371378	ENST00000540001		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000371378	ENST00000537333		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000371378	ENST00000234725		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-intron	ENST00000371378	ENST00000480952		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
In-frame	ENST00000194214	ENST00000371429		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000194214	ENST00000540001		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000194214	ENST00000537333		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000194214	ENST00000234725		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5CDS-intron	ENST00000194214	ENST00000480952		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3CDS	ENST00000371377	ENST00000371429		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3UTR	ENST00000371377	ENST00000540001		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3UTR	ENST00000371377	ENST00000537333		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3UTR	ENST00000371377	ENST00000234725		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-intron	ENST00000371377	ENST00000480952		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5UTR-3CDS	ENST00000489675	ENST00000371429		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5UTR-3UTR	ENST00000489675	ENST00000540001		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5UTR-3UTR	ENST00000489675	ENST00000537333		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5UTR-3UTR	ENST00000489675	ENST00000234725		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
5UTR-intron	ENST00000489675	ENST00000480952		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3CDS	ENST00000371376	ENST00000371429		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3UTR	ENST00000371376	ENST00000540001		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3UTR	ENST00000371376	ENST00000537333		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-3UTR	ENST00000371376	ENST00000234725		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
intron-intron	ENST00000371376	ENST00000480952		TCGA	LD	HNSC	TCGA-CV-6441-01A	HSPB11	chr1	54389577	-	NDC1	chr1	54238162	-
In-frame	ENST00000525428	ENST00000368503		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000525428	ENST00000296955		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000525428	ENST00000338728		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
5CDS-intron	ENST00000525428	ENST00000534777		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000263309	ENST00000368503		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000263309	ENST00000296955		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000263309	ENST00000338728		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
5CDS-intron	ENST00000263309	ENST00000534777		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000525064	ENST00000368503		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000525064	ENST00000296955		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000525064	ENST00000338728		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
5CDS-intron	ENST00000525064	ENST00000534777		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000532069	ENST00000368503		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000532069	ENST00000296955		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000532069	ENST00000338728		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
5CDS-intron	ENST00000532069	ENST00000534777		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000528364	ENST00000368503		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000528364	ENST00000296955		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
In-frame	ENST00000528364	ENST00000338728		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
5CDS-intron	ENST00000528364	ENST00000534777		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
intron-3CDS	ENST00000533957	ENST00000368503		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
intron-3CDS	ENST00000533957	ENST00000296955		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
intron-3CDS	ENST00000533957	ENST00000338728		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
intron-intron	ENST00000533957	ENST00000534777		TCGA	LD	HNSC	TCGA-CV-6933-01A	CLNS1A	chr11	77348635	-	DCBLD1	chr6	117853423	+
Frame-shit	ENST00000321505	ENST00000369426		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
Frame-shit	ENST00000321505	ENST00000235521		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
5CDS-5UTR	ENST00000321505	ENST00000537870		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
5CDS-intron	ENST00000321505	ENST00000497761		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
Frame-shit	ENST00000389726	ENST00000369426		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
Frame-shit	ENST00000389726	ENST00000235521		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
5CDS-5UTR	ENST00000389726	ENST00000537870		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
5CDS-intron	ENST00000389726	ENST00000497761		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
Frame-shit	ENST00000265654	ENST00000369426		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
Frame-shit	ENST00000265654	ENST00000235521		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
5CDS-5UTR	ENST00000265654	ENST00000537870		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
5CDS-intron	ENST00000265654	ENST00000497761		TCGA	LD	HNSC	TCGA-CV-6937-01A	KIAA1549L	chr11	33596419	+	WARS2	chr1	119619230	-
In-frame	ENST00000328879	ENST00000321505		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
In-frame	ENST00000328879	ENST00000389726		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
5CDS-intron	ENST00000328879	ENST00000265654		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
Frame-shit	ENST00000440659	ENST00000321505		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
Frame-shit	ENST00000440659	ENST00000389726		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
5CDS-intron	ENST00000440659	ENST00000265654		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
intron-3CDS	ENST00000470335	ENST00000321505		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
intron-3CDS	ENST00000470335	ENST00000389726		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
intron-intron	ENST00000470335	ENST00000265654		TCGA	LD	HNSC	TCGA-CV-6937-01A	KLHL22	chr22	20819145	-	KIAA1549L	chr11	33677558	+
intron-3CDS	ENST00000443839	ENST00000328879		TCGA	LD	HNSC	TCGA-CV-6937-01A	SMPD4P1	chr22	20967950	-	KLHL22	chr22	20825802	-
intron-intron	ENST00000443839	ENST00000440659		TCGA	LD	HNSC	TCGA-CV-6937-01A	SMPD4P1	chr22	20967950	-	KLHL22	chr22	20825802	-
intron-intron	ENST00000443839	ENST00000470335		TCGA	LD	HNSC	TCGA-CV-6937-01A	SMPD4P1	chr22	20967950	-	KLHL22	chr22	20825802	-
In-frame	ENST00000294304	ENST00000216027		TCGA	LD	HNSC	TCGA-CV-6939-01A	LRP5	chr11	68214001	+	HSCB	chr22	29139870	+
In-frame	ENST00000294304	ENST00000398941		TCGA	LD	HNSC	TCGA-CV-6939-01A	LRP5	chr11	68214001	+	HSCB	chr22	29139870	+
5CDS-3UTR	ENST00000294304	ENST00000495977		TCGA	LD	HNSC	TCGA-CV-6939-01A	LRP5	chr11	68214001	+	HSCB	chr22	29139870	+
intron-3CDS	ENST00000529481	ENST00000216027		TCGA	LD	HNSC	TCGA-CV-6939-01A	LRP5	chr11	68214001	+	HSCB	chr22	29139870	+
intron-3CDS	ENST00000529481	ENST00000398941		TCGA	LD	HNSC	TCGA-CV-6939-01A	LRP5	chr11	68214001	+	HSCB	chr22	29139870	+
intron-3UTR	ENST00000529481	ENST00000495977		TCGA	LD	HNSC	TCGA-CV-6939-01A	LRP5	chr11	68214001	+	HSCB	chr22	29139870	+
In-frame	ENST00000358658	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
3UTR-3CDS	ENST00000355369	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
3UTR-3CDS	ENST00000339885	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
Frame-shit	ENST00000526799	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
In-frame	ENST00000356632	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
In-frame	ENST00000340252	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
In-frame	ENST00000355721	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
intron-3CDS	ENST00000528884	ENST00000300146		TCGA	LD	HNSC	TCGA-CV-6939-01A	NAALADL1	chr11	64813294	-	PATL1	chr11	59421545	-
intron-3CDS	ENST00000368315	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000368315	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-intron	ENST00000368315	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
5UTR-3CDS	ENST00000313695	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
5UTR-3CDS	ENST00000313695	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
5UTR-intron	ENST00000313695	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000361247	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000361247	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-intron	ENST00000361247	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000368316	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000368316	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-intron	ENST00000368316	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000462460	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000462460	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-intron	ENST00000462460	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000477754	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000477754	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-intron	ENST00000477754	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000313667	ENST00000361813		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-3CDS	ENST00000313667	ENST00000368267		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
intron-intron	ENST00000313667	ENST00000489907		TCGA	LD	HNSC	TCGA-CV-6941-01A	ARHGEF2	chr1	155947858	-	SMG5	chr1	156244477	-
In-frame	ENST00000381061	ENST00000248846		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
5CDS-intron	ENST00000381061	ENST00000491449		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
5CDS-intron	ENST00000381061	ENST00000439308		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
In-frame	ENST00000252934	ENST00000248846		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
5CDS-intron	ENST00000252934	ENST00000491449		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
5CDS-intron	ENST00000252934	ENST00000439308		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
intron-3CDS	ENST00000498009	ENST00000248846		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
intron-intron	ENST00000498009	ENST00000491449		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
intron-intron	ENST00000498009	ENST00000439308		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
intron-3CDS	ENST00000402380	ENST00000248846		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
intron-intron	ENST00000402380	ENST00000491449		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
intron-intron	ENST00000402380	ENST00000439308		TCGA	LD	HNSC	TCGA-CV-6941-01A	ATXN10	chr22	46136418	+	TUBGCP6	chr22	50666457	-
5CDS-5UTR	ENST00000397493	ENST00000396884		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-5UTR	ENST00000397493	ENST00000360880		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-intron	ENST00000397493	ENST00000470555		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-5UTR	ENST00000327423	ENST00000396884		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-5UTR	ENST00000327423	ENST00000360880		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-intron	ENST00000327423	ENST00000470555		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-5UTR	ENST00000434485	ENST00000396884		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-5UTR	ENST00000434485	ENST00000360880		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
5CDS-intron	ENST00000434485	ENST00000470555		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
intron-5UTR	ENST00000461722	ENST00000396884		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
intron-5UTR	ENST00000461722	ENST00000360880		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
intron-intron	ENST00000461722	ENST00000470555		TCGA	LD	HNSC	TCGA-CV-6941-01A	PRR14L	chr22	32134373	-	SOX10	chr22	38379875	-
Frame-shit	ENST00000344921	ENST00000216139		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000344921	ENST00000529621		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000344921	ENST00000527761		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
Frame-shit	ENST00000263121	ENST00000216139		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000263121	ENST00000529621		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000263121	ENST00000527761		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
Frame-shit	ENST00000407422	ENST00000216139		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000407422	ENST00000529621		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000407422	ENST00000527761		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
Frame-shit	ENST00000407082	ENST00000216139		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000407082	ENST00000529621		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
5CDS-intron	ENST00000407082	ENST00000527761		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
intron-3CDS	ENST00000477836	ENST00000216139		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
intron-intron	ENST00000477836	ENST00000529621		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
intron-intron	ENST00000477836	ENST00000527761		TCGA	LD	HNSC	TCGA-CV-6941-01A	SMARCB1	chr22	24167602	+	ACR	chr22	51182489	+
Frame-shit	ENST00000264731	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000264731	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000264731	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
intron-3CDS	ENST00000382063	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
intron-intron	ENST00000382063	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
intron-intron	ENST00000382063	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000418709	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000418709	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000418709	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000320472	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000320472	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000320472	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000392460	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000392460	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000392460	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000440651	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000440651	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000440651	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000354600	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000354600	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000354600	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000437221	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000437221	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000437221	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000392463	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000392463	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000392463	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000392461	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000392461	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000392461	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
Frame-shit	ENST00000456148	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000456148	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
5CDS-intron	ENST00000456148	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
intron-3CDS	ENST00000449992	ENST00000350796		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
intron-intron	ENST00000449992	ENST00000396741		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
intron-intron	ENST00000449992	ENST00000488964		TCGA	LD	HNSC	TCGA-CV-6941-01A	TP63	chr3	189526315	+	CYTH3	chr7	6230162	-
In-frame	ENST00000368842	ENST00000261778		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000368842	ENST00000561931		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
In-frame	ENST00000368839	ENST00000261778		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000368839	ENST00000561931		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
In-frame	ENST00000392757	ENST00000261778		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000392757	ENST00000561931		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
intron-3CDS	ENST00000482963	ENST00000261778		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
intron-intron	ENST00000482963	ENST00000561931		TCGA	LD	HNSC	TCGA-CV-6948-01A	LHPP	chr10	126172895	+	TANGO6	chr16	69056731	+
5CDS-3UTR	ENST00000170447	ENST00000548458		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000170447	ENST00000549893		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000170447	ENST00000443585		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000170447	ENST00000552457		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-3UTR	ENST00000411987	ENST00000548458		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000411987	ENST00000549893		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000411987	ENST00000443585		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000411987	ENST00000552457		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-3UTR	ENST00000448482	ENST00000548458		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000448482	ENST00000549893		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000448482	ENST00000443585		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
5CDS-intron	ENST00000448482	ENST00000552457		TCGA	LD	HNSC	TCGA-CV-6948-01A	MKRN2	chr3	12618240	+	C12orf75	chr12	105720748	+
In-frame	ENST00000399312	ENST00000265944		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
5CDS-intron	ENST00000399312	ENST00000543632		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
5CDS-intron	ENST00000399312	ENST00000376302		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
5CDS-intron	ENST00000399312	ENST00000376301		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
5CDS-intron	ENST00000399312	ENST00000478093		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
intron-3CDS	ENST00000482679	ENST00000265944		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
intron-intron	ENST00000482679	ENST00000543632		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
intron-intron	ENST00000482679	ENST00000376302		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
intron-intron	ENST00000482679	ENST00000376301		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
intron-intron	ENST00000482679	ENST00000478093		TCGA	LD	HNSC	TCGA-CV-6948-01A	MRPS6	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-3CDS	ENST00000381151	ENST00000265944		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000381151	ENST00000543632		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000381151	ENST00000376302		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000381151	ENST00000376301		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000381151	ENST00000478093		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-3CDS	ENST00000608209	ENST00000265944		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000608209	ENST00000543632		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000608209	ENST00000376302		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000608209	ENST00000376301		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5UTR-intron	ENST00000608209	ENST00000478093		TCGA	LD	HNSC	TCGA-CV-6948-01A	SLC5A3	chr21	35446045	+	MYO3A	chr10	26490194	+
5CDS-3UTR	ENST00000381031	ENST00000419462		TCGA	LD	HNSC	TCGA-CV-6948-01A	TTC38	chr22	46674558	+	NACAP1	chr8	102379851	+
5CDS-3UTR	ENST00000445282	ENST00000419462		TCGA	LD	HNSC	TCGA-CV-6948-01A	TTC38	chr22	46674558	+	NACAP1	chr8	102379851	+
5CDS-intron	ENST00000326799	ENST00000376070		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000326799	ENST00000376087		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000326799	ENST00000436985		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000326799	ENST00000466890		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000376016	ENST00000376070		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000376016	ENST00000376087		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000376016	ENST00000436985		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000376016	ENST00000466890		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000375972	ENST00000376070		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000375972	ENST00000376087		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000375972	ENST00000436985		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000375972	ENST00000466890		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000463270	ENST00000376070		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000463270	ENST00000376087		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000463270	ENST00000436985		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000463270	ENST00000466890		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000477432	ENST00000376070		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000477432	ENST00000376087		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000477432	ENST00000436985		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
intron-intron	ENST00000477432	ENST00000466890		TCGA	LD	HNSC	TCGA-CV-6948-01A	YME1L1	chr10	27431316	-	ANKRD26	chr10	27284076	-
Frame-shit	ENST00000540593	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
5CDS-intron	ENST00000540593	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
Frame-shit	ENST00000324593	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
5CDS-intron	ENST00000324593	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
3UTR-3CDS	ENST00000412490	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
3UTR-intron	ENST00000412490	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
Frame-shit	ENST00000442160	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
5CDS-intron	ENST00000442160	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
Frame-shit	ENST00000555044	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
5CDS-intron	ENST00000555044	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
Frame-shit	ENST00000334521	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
5CDS-intron	ENST00000334521	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
intron-3CDS	ENST00000556797	ENST00000555028		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
intron-intron	ENST00000556797	ENST00000554076		TCGA	LD	HNSC	TCGA-CV-6948-01A	ZNF410	chr14	74376133	+	LIN52	chr14	74665625	+
Frame-shit	ENST00000532481	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000527134	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000304716	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000526415	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
intron-3CDS	ENST00000531855	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000393427	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000525409	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000533193	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000525034	ENST00000306238		TCGA	LD	HNSC	TCGA-CV-6951-01A	AAMDC	chr11	77553674	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000394919	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394919	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000342444	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000317168	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545550	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000317126	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
Frame-shit	ENST00000394915	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000401998		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000361114		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000398761		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000418483		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-3CDS	ENST00000492502	ENST00000398763		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
intron-intron	ENST00000492502	ENST00000604025		TCGA	LD	HNSC	TCGA-CV-6953-01A	ASCC1	chr10	73956569	-	MICU1	chr10	74167795	-
In-frame	ENST00000545260	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000545693	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000350537	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000346874	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000374789	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000374790	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000374794	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000374788	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
5UTR-3CDS	ENST00000466092	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000374776	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000340077	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
Frame-shit	ENST00000544292	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000374773	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
intron-3CDS	ENST00000374768	ENST00000368984		TCGA	LD	HNSC	TCGA-CV-6953-01A	PARD3	chr10	34620045	-	HTRA1	chr10	124248418	+
In-frame	ENST00000368738	ENST00000390548		TCGA	LD	HNSC	TCGA-CV-6953-01A	S100A9	chr1	153330837	+	IGHG1	chr14	106209181	-
intron-3CDS	ENST00000368750	ENST00000368748		TCGA	LD	HNSC	TCGA-CV-6953-01A	SPRR2E	chr1	153066029	-	SPRR2G	chr1	153122507	-
intron-3CDS	ENST00000368751	ENST00000368748		TCGA	LD	HNSC	TCGA-CV-6953-01A	SPRR2E	chr1	153066029	-	SPRR2G	chr1	153122507	-
5CDS-intron	ENST00000340250	ENST00000382368		TCGA	LD	HNSC	TCGA-CV-6956-01A	FSCN1	chr7	5645015	+	FBXL18	chr7	5478282	-
5CDS-intron	ENST00000340250	ENST00000453700		TCGA	LD	HNSC	TCGA-CV-6956-01A	FSCN1	chr7	5645015	+	FBXL18	chr7	5478282	-
5CDS-intron	ENST00000382361	ENST00000382368		TCGA	LD	HNSC	TCGA-CV-6956-01A	FSCN1	chr7	5645015	+	FBXL18	chr7	5478282	-
5CDS-intron	ENST00000382361	ENST00000453700		TCGA	LD	HNSC	TCGA-CV-6956-01A	FSCN1	chr7	5645015	+	FBXL18	chr7	5478282	-
In-frame	ENST00000557636	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
5CDS-intron	ENST00000557636	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
intron-3CDS	ENST00000286650	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
intron-intron	ENST00000286650	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
In-frame	ENST00000298832	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
5CDS-intron	ENST00000298832	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
In-frame	ENST00000556893	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
5CDS-intron	ENST00000556893	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
In-frame	ENST00000554510	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
5CDS-intron	ENST00000554510	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
intron-3CDS	ENST00000556977	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
intron-intron	ENST00000556977	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
intron-3CDS	ENST00000555422	ENST00000303575		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
intron-intron	ENST00000555422	ENST00000557670		TCGA	LD	HNSC	TCGA-CV-6961-01A	TTLL5	chr14	76259443	+	TMED10	chr14	75618846	-
5CDS-intron	ENST00000375640	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375640	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375640	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375641	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375641	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375638	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375638	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375635	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375635	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375639	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375639	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375642	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375642	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000395789	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395789	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000375633	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000375633	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-3UTR	ENST00000395788	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
5CDS-intron	ENST00000395788	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000424962	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000424962	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000456268	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456268	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000435938	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000435938	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000433752	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433752	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000458514	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000458514	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000549426	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000549426	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000550200	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550200	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000430690	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000430690	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000436558	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436558	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000456690	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000456690	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000439907	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439907	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000444974	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444974	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000439865	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000439865	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000413638	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000413638	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000423640	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423640	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000444192	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444192	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000551797	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551797	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000552514	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000552514	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000440361	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000440361	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000443974	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000443974	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000416886	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000416886	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000436205	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436205	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000450610	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000450610	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000433697	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000433697	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000414434	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414434	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000421605	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421605	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000444331	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000444331	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000551957	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000551957	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000550492	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550492	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000423916	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000423916	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000436495	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000436495	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000426843	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000426843	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000421039	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000421039	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000414536	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000414536	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000400038	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400038	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000383384	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383384	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000383385	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383385	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000383383	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000383383	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000547624	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000547624	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000550685	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000550685	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000400037	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400037	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000400035	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400035	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000400034	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400034	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000396581		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-3UTR	ENST00000400039	ENST00000489892		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000376724		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000307859		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000497688		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000433713		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000436951		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000437563		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000470577		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000552119		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000429471		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000431397		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000475016		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000548672		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000445004		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000425845		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000488232		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000418267		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000383610		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000476094		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000547289		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000400651		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000434151		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000462556		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000549728		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000421981		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000430485		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000456884		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
intron-intron	ENST00000400039	ENST00000486552		TCGA	LD	HNSC	TCGA-CV-6962-01A	C6orf48	chr6	31805212	+	TRIM40	chr6	30104189	+
Frame-shit	ENST00000515393	ENST00000535648		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000346706		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000340094		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000345230		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
In-frame	ENST00000515393	ENST00000350763		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000341037		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000423613		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000537320		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000515393	ENST00000542877		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
5CDS-intron	ENST00000515393	ENST00000481475		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000535648		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000346706		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000340094		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000345230		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000350763		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000341037		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000423613		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000537320		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000429576	ENST00000542877		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-intron	ENST00000429576	ENST00000481475		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000535648		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000346706		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000340094		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000345230		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
In-frame	ENST00000312216	ENST00000350763		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000341037		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000423613		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000537320		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000312216	ENST00000542877		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
5CDS-intron	ENST00000312216	ENST00000481475		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000535648		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000346706		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000340094		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000345230		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
In-frame	ENST00000505208	ENST00000350763		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000341037		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000423613		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000537320		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
Frame-shit	ENST00000505208	ENST00000542877		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
5CDS-intron	ENST00000505208	ENST00000481475		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000535648		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000346706		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000340094		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000345230		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000350763		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000341037		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000423613		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000537320		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000514040	ENST00000542877		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-intron	ENST00000514040	ENST00000481475		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000535648		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000346706		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000340094		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000345230		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000350763		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000341037		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000423613		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000537320		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-3CDS	ENST00000505078	ENST00000542877		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
intron-intron	ENST00000505078	ENST00000481475		TCGA	LD	HNSC	TCGA-CV-7097-01A	MCTP1	chr5	94259667	-	TNC	chr9	117783546	-
In-frame	ENST00000334220	ENST00000216479		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
In-frame	ENST00000334220	ENST00000535854		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
5CDS-intron	ENST00000334220	ENST00000555517		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
5CDS-intron	ENST00000334220	ENST00000555457		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
Frame-shit	ENST00000334212	ENST00000216479		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
Frame-shit	ENST00000334212	ENST00000535854		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
5CDS-intron	ENST00000334212	ENST00000555517		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
5CDS-intron	ENST00000334212	ENST00000555457		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
3UTR-3CDS	ENST00000555190	ENST00000216479		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
3UTR-3CDS	ENST00000555190	ENST00000535854		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
3UTR-intron	ENST00000555190	ENST00000555517		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
3UTR-intron	ENST00000555190	ENST00000555457		TCGA	LD	HNSC	TCGA-CV-7099-01A	DLST	chr14	75356052	+	AHSA1	chr14	77930941	+
Frame-shit	ENST00000558518	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000558518	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000558518	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000558518	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
Frame-shit	ENST00000557933	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000557933	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000557933	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000557933	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
Frame-shit	ENST00000455727	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000455727	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000455727	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000455727	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
Frame-shit	ENST00000535915	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000535915	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000535915	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000535915	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
Frame-shit	ENST00000545707	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000545707	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000545707	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000545707	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
Frame-shit	ENST00000558013	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000558013	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000558013	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000558013	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
intron-3CDS	ENST00000560628	ENST00000253680		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
intron-intron	ENST00000560628	ENST00000397372		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
intron-intron	ENST00000560628	ENST00000593154		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
intron-intron	ENST00000560628	ENST00000588246		TCGA	LD	HNSC	TCGA-CV-7100-01A	LDLR	chr19	11200291	+	HSH2D	chr19	16263362	+
Frame-shit	ENST00000275428	ENST00000323037		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
5CDS-intron	ENST00000275428	ENST00000459998		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-3CDS	ENST00000005374	ENST00000323037		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-intron	ENST00000005374	ENST00000459998		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-3CDS	ENST00000409144	ENST00000323037		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-intron	ENST00000409144	ENST00000459998		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-3CDS	ENST00000409390	ENST00000323037		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-intron	ENST00000409390	ENST00000459998		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
Frame-shit	ENST00000598361	ENST00000323037		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
5CDS-intron	ENST00000598361	ENST00000459998		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
Frame-shit	ENST00000409436	ENST00000323037		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
5CDS-intron	ENST00000409436	ENST00000459998		TCGA	LD	HNSC	TCGA-CV-7101-01A	GGCT	chr7	30538419	-	ZNRF2	chr7	30363258	+
intron-5UTR	ENST00000430069	ENST00000447063		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
intron-5UTR	ENST00000430069	ENST00000524591		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
intron-3UTR	ENST00000430069	ENST00000528335		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
intron-5UTR	ENST00000430069	ENST00000400069		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
intron-5UTR	ENST00000430069	ENST00000528753		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
5UTR-5UTR	ENST00000457928	ENST00000447063		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
5UTR-5UTR	ENST00000457928	ENST00000524591		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
5UTR-3UTR	ENST00000457928	ENST00000528335		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
5UTR-5UTR	ENST00000457928	ENST00000400069		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
5UTR-5UTR	ENST00000457928	ENST00000528753		TCGA	LD	HNSC	TCGA-CV-7101-01A	TBL1XR1	chr3	176914909	-	KIAA1456	chr8	12863711	+
intron-3CDS	ENST00000356218	ENST00000337334		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000356218	ENST00000353130		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000356218	ENST00000395752		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-intron	ENST00000356218	ENST00000554241		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000557103	ENST00000337334		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000557103	ENST00000353130		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000557103	ENST00000395752		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-intron	ENST00000557103	ENST00000554241		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000395718	ENST00000337334		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000395718	ENST00000353130		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000395718	ENST00000395752		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-intron	ENST00000395718	ENST00000554241		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000344768	ENST00000337334		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000344768	ENST00000353130		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000344768	ENST00000395752		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-intron	ENST00000344768	ENST00000554241		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000554167	ENST00000337334		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000554167	ENST00000353130		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000554167	ENST00000395752		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-intron	ENST00000554167	ENST00000554241		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000553556	ENST00000337334		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000553556	ENST00000353130		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000553556	ENST00000395752		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-intron	ENST00000553556	ENST00000554241		TCGA	LD	HNSC	TCGA-CV-7103-01A	FRMD6	chr14	51958252	+	ABHD12B	chr14	51368547	+
intron-3CDS	ENST00000464611	ENST00000369733		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
intron-3CDS	ENST00000464611	ENST00000353479		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
intron-intron	ENST00000464611	ENST00000480127		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
intron-intron	ENST00000464611	ENST00000393211		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
In-frame	ENST00000331789	ENST00000369733		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
In-frame	ENST00000331789	ENST00000353479		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
5CDS-intron	ENST00000331789	ENST00000480127		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
5CDS-intron	ENST00000331789	ENST00000393211		TCGA	LD	HNSC	TCGA-CV-7104-01A	ACTB	chr7	5569166	-	COL17A1	chr10	105801102	-
intron-3CDS	ENST00000396757	ENST00000314888		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000396757	ENST00000540444		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-5UTR	ENST00000396757	ENST00000464379		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000259633	ENST00000314888		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000259633	ENST00000540444		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-5UTR	ENST00000259633	ENST00000464379		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000490239	ENST00000314888		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000490239	ENST00000540444		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-5UTR	ENST00000490239	ENST00000464379		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000378431	ENST00000314888		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000378431	ENST00000540444		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-5UTR	ENST00000378431	ENST00000464379		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000378430	ENST00000314888		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-3CDS	ENST00000378430	ENST00000540444		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
intron-5UTR	ENST00000378430	ENST00000464379		TCGA	LD	HNSC	TCGA-CV-7104-01A	CD72	chr9	35646400	-	TLN1	chr9	35703673	-
Frame-shit	ENST00000313654	ENST00000300413		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
5CDS-3UTR	ENST00000313654	ENST00000579618		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
5CDS-3UTR	ENST00000313654	ENST00000582475		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
Frame-shit	ENST00000399516	ENST00000300413		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
5CDS-3UTR	ENST00000399516	ENST00000579618		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
5CDS-3UTR	ENST00000399516	ENST00000582475		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3CDS	ENST00000269217	ENST00000300413		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3UTR	ENST00000269217	ENST00000579618		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3UTR	ENST00000269217	ENST00000582475		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3CDS	ENST00000587184	ENST00000300413		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3UTR	ENST00000587184	ENST00000579618		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3UTR	ENST00000587184	ENST00000582475		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3CDS	ENST00000588770	ENST00000300413		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3UTR	ENST00000588770	ENST00000579618		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
intron-3UTR	ENST00000588770	ENST00000582475		TCGA	LD	HNSC	TCGA-CV-7104-01A	LAMA3	chr18	21357583	+	SNRPD1	chr18	19209023	+
In-frame	ENST00000524892	ENST00000526343		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000524892	ENST00000282441		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000524892	ENST00000537274		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000524892	ENST00000345877		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000524892	ENST00000531439		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000524892	ENST00000524575		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
5CDS-intron	ENST00000524892	ENST00000528834		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000298815	ENST00000526343		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000298815	ENST00000282441		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000298815	ENST00000537274		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000298815	ENST00000345877		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000298815	ENST00000531439		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000298815	ENST00000524575		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
5CDS-intron	ENST00000298815	ENST00000528834		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-3CDS	ENST00000534060	ENST00000526343		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-3CDS	ENST00000534060	ENST00000282441		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-3CDS	ENST00000534060	ENST00000537274		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-3CDS	ENST00000534060	ENST00000345877		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-3CDS	ENST00000534060	ENST00000531439		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-3CDS	ENST00000534060	ENST00000524575		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
intron-intron	ENST00000534060	ENST00000528834		TCGA	LD	HNSC	TCGA-CV-7235-01A	ARHGAP42	chr11	100558563	+	YAP1	chr11	102076624	+
In-frame	ENST00000372797	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372797	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
5CDS-3UTR	ENST00000372797	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372802	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372802	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
5CDS-3UTR	ENST00000372802	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372792	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372792	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
5CDS-3UTR	ENST00000372792	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372798	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372798	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
5CDS-3UTR	ENST00000372798	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000340450	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000340450	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
5CDS-3UTR	ENST00000340450	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372805	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372805	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
5CDS-3UTR	ENST00000372805	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
intron-3CDS	ENST00000479759	ENST00000347132		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
intron-3CDS	ENST00000479759	ENST00000509682		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
intron-3UTR	ENST00000479759	ENST00000506017		TCGA	LD	HNSC	TCGA-CV-7235-01A	CAP1	chr1	40527484	+	KCNQ4	chr1	41285547	+
In-frame	ENST00000372009	ENST00000375706		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
Frame-shit	ENST00000372009	ENST00000375704		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
Frame-shit	ENST00000372009	ENST00000525374		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
In-frame	ENST00000361297	ENST00000375706		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
Frame-shit	ENST00000361297	ENST00000375704		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
Frame-shit	ENST00000361297	ENST00000525374		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
intron-3CDS	ENST00000477968	ENST00000375706		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
intron-3CDS	ENST00000477968	ENST00000375704		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
intron-3CDS	ENST00000477968	ENST00000525374		TCGA	LD	HNSC	TCGA-CV-7235-01A	MAST2	chr1	46489652	+	CARD16	chr11	104915385	-
3UTR-5UTR	ENST00000396613	ENST00000450095		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-5UTR	ENST00000396613	ENST00000556278		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-5UTR	ENST00000396613	ENST00000378842		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-intron	ENST00000396613	ENST00000488412		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
intron-5UTR	ENST00000377959	ENST00000450095		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
intron-5UTR	ENST00000377959	ENST00000556278		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
intron-5UTR	ENST00000377959	ENST00000378842		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
intron-intron	ENST00000377959	ENST00000488412		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000377960	ENST00000450095		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000377960	ENST00000556278		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000377960	ENST00000378842		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
5CDS-intron	ENST00000377960	ENST00000488412		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-5UTR	ENST00000474050	ENST00000450095		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-5UTR	ENST00000474050	ENST00000556278		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-5UTR	ENST00000474050	ENST00000378842		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
3UTR-intron	ENST00000474050	ENST00000488412		TCGA	LD	HNSC	TCGA-CV-7238-01A	GLIPR2	chr9	36150946	+	GALT	chr9	34646674	+
5CDS-5UTR	ENST00000262577	ENST00000521193		TCGA	LD	HNSC	TCGA-CV-7238-01A	ZC3H3	chr8	144618427	-	TOP1MT	chr8	144413509	-
5CDS-5UTR	ENST00000262577	ENST00000519148		TCGA	LD	HNSC	TCGA-CV-7238-01A	ZC3H3	chr8	144618427	-	TOP1MT	chr8	144413509	-
5CDS-intron	ENST00000262577	ENST00000505857		TCGA	LD	HNSC	TCGA-CV-7238-01A	ZC3H3	chr8	144618427	-	TOP1MT	chr8	144413509	-
5CDS-intron	ENST00000262577	ENST00000329245		TCGA	LD	HNSC	TCGA-CV-7238-01A	ZC3H3	chr8	144618427	-	TOP1MT	chr8	144413509	-
5CDS-5UTR	ENST00000262577	ENST00000523676		TCGA	LD	HNSC	TCGA-CV-7238-01A	ZC3H3	chr8	144618427	-	TOP1MT	chr8	144413509	-
Frame-shit	ENST00000377532	ENST00000303635		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
Frame-shit	ENST00000377532	ENST00000439411		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377532	ENST00000476163		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377532	ENST00000557126		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377532	ENST00000473578		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377532	ENST00000467404		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377532	ENST00000476864		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
Frame-shit	ENST00000361923	ENST00000303635		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
Frame-shit	ENST00000361923	ENST00000439411		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000361923	ENST00000476163		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000361923	ENST00000557126		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000361923	ENST00000473578		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000361923	ENST00000467404		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000361923	ENST00000476864		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
Frame-shit	ENST00000377541	ENST00000303635		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
Frame-shit	ENST00000377541	ENST00000439411		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377541	ENST00000476163		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377541	ENST00000557126		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377541	ENST00000473578		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377541	ENST00000467404		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
5CDS-intron	ENST00000377541	ENST00000476864		TCGA	LD	HNSC	TCGA-CV-7242-01A	PER3	chr1	7854068	+	CAMTA1	chr1	7792508	+
In-frame	ENST00000352456	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000352456	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000352456	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000352456	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000595018	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000595018	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000595018	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000595018	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000392006	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000392006	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000392006	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000392006	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-3CDS	ENST00000378215	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-3CDS	ENST00000378215	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-intron	ENST00000378215	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-intron	ENST00000378215	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000602130	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000602130	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000602130	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000602130	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000593587	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000593587	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000593587	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000593587	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000263367	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
In-frame	ENST00000263367	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000263367	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-intron	ENST00000263367	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-3CDS	ENST00000594207	ENST00000595085		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-3CDS	ENST00000594207	ENST00000269980		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-intron	ENST00000594207	ENST00000457836		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
intron-intron	ENST00000594207	ENST00000535632		TCGA	LD	HNSC	TCGA-CV-7245-01A	HNRNPUL1	chr19	41787180	+	BCKDHA	chr19	41916542	+
5CDS-5UTR	ENST00000374242	ENST00000374287		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5CDS-5UTR	ENST00000374242	ENST00000374283		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5CDS-intron	ENST00000374242	ENST00000394777		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5CDS-intron	ENST00000374242	ENST00000394779		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5CDS-intron	ENST00000374242	ENST00000318737		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-5UTR	ENST00000374238	ENST00000374287		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-5UTR	ENST00000374238	ENST00000374283		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-intron	ENST00000374238	ENST00000394777		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-intron	ENST00000374238	ENST00000394779		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-intron	ENST00000374238	ENST00000318737		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-5UTR	ENST00000497712	ENST00000374287		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-5UTR	ENST00000497712	ENST00000374283		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-intron	ENST00000497712	ENST00000394777		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-intron	ENST00000497712	ENST00000394779		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5UTR-intron	ENST00000497712	ENST00000318737		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-5UTR	ENST00000374236	ENST00000374287		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-5UTR	ENST00000374236	ENST00000374283		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-intron	ENST00000374236	ENST00000394777		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-intron	ENST00000374236	ENST00000394779		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-intron	ENST00000374236	ENST00000318737		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-5UTR	ENST00000374234	ENST00000374287		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-5UTR	ENST00000374234	ENST00000374283		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-intron	ENST00000374234	ENST00000394777		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-intron	ENST00000374234	ENST00000394779		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
intron-intron	ENST00000374234	ENST00000318737		TCGA	LD	HNSC	TCGA-CV-7247-01A	INIP	chr9	115478741	-	C9orf84	chr9	114548315	-
5CDS-5UTR	ENST00000301740	ENST00000293851		TCGA	LD	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836605	-
5CDS-5UTR	ENST00000301740	ENST00000576886		TCGA	LD	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836605	-
5CDS-5UTR	ENST00000301740	ENST00000570702		TCGA	LD	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836605	-
intron-5UTR	ENST00000574593	ENST00000293851		TCGA	LD	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836605	-
intron-5UTR	ENST00000574593	ENST00000576886		TCGA	LD	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836605	-
intron-5UTR	ENST00000574593	ENST00000570702		TCGA	LD	HNSC	TCGA-CV-7247-01A	SRRM2	chr16	2810500	+	PRSS33	chr16	2836605	-
5CDS-5UTR	ENST00000273853	ENST00000265404		TCGA	LD	HNSC	TCGA-CV-7248-01A	CENPC	chr4	68383874	-	STAP1	chr4	68424470	+
5CDS-5UTR	ENST00000273853	ENST00000396225		TCGA	LD	HNSC	TCGA-CV-7248-01A	CENPC	chr4	68383874	-	STAP1	chr4	68424470	+
In-frame	ENST00000303052	ENST00000444766		TCGA	LD	HNSC	TCGA-CV-7253-01A	CSNK1G1	chr15	64592518	-	INTS2	chr17	59947349	-
In-frame	ENST00000303052	ENST00000251334		TCGA	LD	HNSC	TCGA-CV-7253-01A	CSNK1G1	chr15	64592518	-	INTS2	chr17	59947349	-
In-frame	ENST00000607537	ENST00000444766		TCGA	LD	HNSC	TCGA-CV-7253-01A	CSNK1G1	chr15	64592518	-	INTS2	chr17	59947349	-
In-frame	ENST00000607537	ENST00000251334		TCGA	LD	HNSC	TCGA-CV-7253-01A	CSNK1G1	chr15	64592518	-	INTS2	chr17	59947349	-
In-frame	ENST00000303032	ENST00000444766		TCGA	LD	HNSC	TCGA-CV-7253-01A	CSNK1G1	chr15	64592518	-	INTS2	chr17	59947349	-
In-frame	ENST00000303032	ENST00000251334		TCGA	LD	HNSC	TCGA-CV-7253-01A	CSNK1G1	chr15	64592518	-	INTS2	chr17	59947349	-
In-frame	ENST00000313654	ENST00000396623		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
In-frame	ENST00000313654	ENST00000415254		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
5CDS-3UTR	ENST00000313654	ENST00000496501		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
5CDS-intron	ENST00000313654	ENST00000379385		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
In-frame	ENST00000399516	ENST00000396623		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
In-frame	ENST00000399516	ENST00000415254		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
5CDS-3UTR	ENST00000399516	ENST00000496501		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
5CDS-intron	ENST00000399516	ENST00000379385		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3CDS	ENST00000269217	ENST00000396623		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3CDS	ENST00000269217	ENST00000415254		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3UTR	ENST00000269217	ENST00000496501		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-intron	ENST00000269217	ENST00000379385		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3CDS	ENST00000587184	ENST00000396623		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3CDS	ENST00000587184	ENST00000415254		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3UTR	ENST00000587184	ENST00000496501		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-intron	ENST00000587184	ENST00000379385		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3CDS	ENST00000588770	ENST00000396623		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3CDS	ENST00000588770	ENST00000415254		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-3UTR	ENST00000588770	ENST00000496501		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
intron-intron	ENST00000588770	ENST00000379385		TCGA	LD	HNSC	TCGA-CV-7254-01A	LAMA3	chr18	21390467	+	ADHFE1	chr8	67372543	+
In-frame	ENST00000222120	ENST00000344338		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
In-frame	ENST00000222120	ENST00000368955		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
In-frame	ENST00000222120	ENST00000330163		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
In-frame	ENST00000222120	ENST00000338354		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
In-frame	ENST00000222120	ENST00000368956		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
In-frame	ENST00000222120	ENST00000368909		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
In-frame	ENST00000222120	ENST00000359586		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000344338		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000368955		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000330163		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000338354		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000368956		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000368909		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
Frame-shit	ENST00000589655	ENST00000359586		TCGA	LD	HNSC	TCGA-CV-7254-01A	RAB3D	chr19	11447848	-	DMBT1	chr10	124395507	+
5CDS-intron	ENST00000409068	ENST00000324589		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409068	ENST00000349752		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409068	ENST00000406653		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409068	ENST00000356174		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409068	ENST00000420311		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409068	ENST00000486564		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409085	ENST00000324589		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409085	ENST00000349752		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409085	ENST00000406653		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409085	ENST00000356174		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409085	ENST00000420311		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000409085	ENST00000486564		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000406297	ENST00000324589		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000406297	ENST00000349752		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000406297	ENST00000406653		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000406297	ENST00000356174		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000406297	ENST00000420311		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
5CDS-intron	ENST00000406297	ENST00000486564		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-intron	ENST00000470281	ENST00000324589		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-intron	ENST00000470281	ENST00000349752		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-intron	ENST00000470281	ENST00000406653		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-intron	ENST00000470281	ENST00000356174		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-intron	ENST00000470281	ENST00000420311		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-intron	ENST00000470281	ENST00000486564		TCGA	LD	HNSC	TCGA-CV-7255-01A	AAK1	chr2	69783992	-	GALNT14	chr2	31369976	-
intron-3UTR	ENST00000271332	ENST00000256637		TCGA	LD	HNSC	TCGA-CV-7255-01A	CELSR2	chr1	109816514	+	SORT1	chr1	109854753	-
intron-intron	ENST00000271332	ENST00000538502		TCGA	LD	HNSC	TCGA-CV-7255-01A	CELSR2	chr1	109816514	+	SORT1	chr1	109854753	-
intron-intron	ENST00000271332	ENST00000482236		TCGA	LD	HNSC	TCGA-CV-7255-01A	CELSR2	chr1	109816514	+	SORT1	chr1	109854753	-
3UTR-3UTR	ENST00000498157	ENST00000256637		TCGA	LD	HNSC	TCGA-CV-7255-01A	CELSR2	chr1	109816514	+	SORT1	chr1	109854753	-
3UTR-intron	ENST00000498157	ENST00000538502		TCGA	LD	HNSC	TCGA-CV-7255-01A	CELSR2	chr1	109816514	+	SORT1	chr1	109854753	-
3UTR-intron	ENST00000498157	ENST00000482236		TCGA	LD	HNSC	TCGA-CV-7255-01A	CELSR2	chr1	109816514	+	SORT1	chr1	109854753	-
intron-3CDS	ENST00000368315	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-5UTR	ENST00000368315	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-3CDS	ENST00000313695	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-5UTR	ENST00000313695	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
In-frame	ENST00000361247	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
5CDS-5UTR	ENST00000361247	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-3CDS	ENST00000368316	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-5UTR	ENST00000368316	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-3CDS	ENST00000462460	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-5UTR	ENST00000462460	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-3CDS	ENST00000477754	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
intron-5UTR	ENST00000477754	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
In-frame	ENST00000313667	ENST00000368309		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
5CDS-5UTR	ENST00000313667	ENST00000472638		TCGA	LD	HNSC	TCGA-CV-7261-01A	ARHGEF2	chr1	155948156	-	UBQLN4	chr1	156021648	-
Frame-shit	ENST00000376279	ENST00000343098		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
Frame-shit	ENST00000376279	ENST00000424728		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000376279	ENST00000465275		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000376279	ENST00000546113		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
Frame-shit	ENST00000376286	ENST00000343098		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
Frame-shit	ENST00000376286	ENST00000424728		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000376286	ENST00000465275		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000376286	ENST00000546113		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
Frame-shit	ENST00000376285	ENST00000343098		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
Frame-shit	ENST00000376285	ENST00000424728		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000376285	ENST00000465275		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000376285	ENST00000546113		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
3UTR-3CDS	ENST00000485946	ENST00000343098		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
3UTR-3CDS	ENST00000485946	ENST00000424728		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
3UTR-intron	ENST00000485946	ENST00000465275		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
3UTR-intron	ENST00000485946	ENST00000546113		TCGA	LD	HNSC	TCGA-CV-7261-01A	PCCA	chr13	100809594	+	FSIP2	chr2	186692883	+
intron-5UTR	ENST00000296043	ENST00000261037		TCGA	LD	HNSC	TCGA-CV-7261-01A	SHROOM3	chr4	77507622	+	COL8A1	chr3	99463741	+
intron-5UTR	ENST00000296043	ENST00000273342		TCGA	LD	HNSC	TCGA-CV-7261-01A	SHROOM3	chr4	77507622	+	COL8A1	chr3	99463741	+
intron-intron	ENST00000296043	ENST00000463753		TCGA	LD	HNSC	TCGA-CV-7261-01A	SHROOM3	chr4	77507622	+	COL8A1	chr3	99463741	+
intron-5UTR	ENST00000473602	ENST00000261037		TCGA	LD	HNSC	TCGA-CV-7261-01A	SHROOM3	chr4	77507622	+	COL8A1	chr3	99463741	+
intron-5UTR	ENST00000473602	ENST00000273342		TCGA	LD	HNSC	TCGA-CV-7261-01A	SHROOM3	chr4	77507622	+	COL8A1	chr3	99463741	+
intron-intron	ENST00000473602	ENST00000463753		TCGA	LD	HNSC	TCGA-CV-7261-01A	SHROOM3	chr4	77507622	+	COL8A1	chr3	99463741	+
In-frame	ENST00000354960	ENST00000399075		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
Frame-shit	ENST00000354960	ENST00000504110		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
In-frame	ENST00000394439	ENST00000399075		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
Frame-shit	ENST00000394439	ENST00000504110		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
In-frame	ENST00000264805	ENST00000399075		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
Frame-shit	ENST00000264805	ENST00000504110		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
intron-3CDS	ENST00000512739	ENST00000399075		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
intron-3CDS	ENST00000512739	ENST00000504110		TCGA	LD	HNSC	TCGA-CV-7406-01A	PDE5A	chr4	120517678	-	C4orf3	chr4	120219934	-
5CDS-3UTR	ENST00000321169	ENST00000443029		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000321169	ENST00000383790		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000321169	ENST00000450816		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000321169	ENST00000383789		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-5UTR	ENST00000321169	ENST00000584799		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-3UTR	ENST00000435217	ENST00000443029		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000435217	ENST00000383790		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000435217	ENST00000450816		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000435217	ENST00000383789		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-5UTR	ENST00000435217	ENST00000584799		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-3UTR	ENST00000451445	ENST00000443029		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000451445	ENST00000383790		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000451445	ENST00000450816		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000451445	ENST00000383789		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-5UTR	ENST00000451445	ENST00000584799		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-3UTR	ENST00000456194	ENST00000443029		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000456194	ENST00000383790		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000456194	ENST00000450816		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000456194	ENST00000383789		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
5CDS-5UTR	ENST00000456194	ENST00000584799		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
intron-3UTR	ENST00000457447	ENST00000443029		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
intron-intron	ENST00000457447	ENST00000383790		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
intron-intron	ENST00000457447	ENST00000450816		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
intron-intron	ENST00000457447	ENST00000383789		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
intron-5UTR	ENST00000457447	ENST00000584799		TCGA	LD	HNSC	TCGA-CV-7407-01A	HACL1	chr3	15613175	-	METTL6	chr3	15425694	-
In-frame	ENST00000281394	ENST00000430487		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
In-frame	ENST00000281394	ENST00000403751		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
5CDS-intron	ENST00000281394	ENST00000468326		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
In-frame	ENST00000294952	ENST00000430487		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
In-frame	ENST00000294952	ENST00000403751		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
5CDS-intron	ENST00000294952	ENST00000468326		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
In-frame	ENST00000449090	ENST00000430487		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
In-frame	ENST00000449090	ENST00000403751		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
5CDS-intron	ENST00000449090	ENST00000468326		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
3UTR-3CDS	ENST00000476199	ENST00000430487		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
3UTR-3CDS	ENST00000476199	ENST00000403751		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
3UTR-intron	ENST00000476199	ENST00000468326		TCGA	LD	HNSC	TCGA-CV-7407-01A	PPP1R21	chr2	48738607	+	GTF2A1L	chr2	48896861	+
In-frame	ENST00000240587	ENST00000333625		TCGA	LD	HNSC	TCGA-CV-7407-01A	TSHZ3	chr19	31840086	-	IFNL1	chr19	39787445	+
In-frame	ENST00000558569	ENST00000333625		TCGA	LD	HNSC	TCGA-CV-7407-01A	TSHZ3	chr19	31840086	-	IFNL1	chr19	39787445	+
5CDS-5UTR	ENST00000332624	ENST00000359878		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5CDS-5UTR	ENST00000332624	ENST00000409157		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5CDS-5UTR	ENST00000332624	ENST00000468413		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5CDS-5UTR	ENST00000430254	ENST00000359878		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5CDS-5UTR	ENST00000430254	ENST00000409157		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5CDS-5UTR	ENST00000430254	ENST00000468413		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5UTR-5UTR	ENST00000451703	ENST00000359878		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5UTR-5UTR	ENST00000451703	ENST00000409157		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5UTR-5UTR	ENST00000451703	ENST00000468413		TCGA	LD	HNSC	TCGA-CV-7409-01A	TRAK2	chr2	202285140	-	KCTD18	chr2	201371814	-
5CDS-intron	ENST00000346798	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000346798	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000354192	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000354192	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000348990	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000348990	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000357903	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000357903	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000358918	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000358918	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000359726	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000359726	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000448388	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000448388	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000440126	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000440126	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-intron	ENST00000439274	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000439274	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5UTR-intron	ENST00000474136	ENST00000468874		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5UTR-5UTR	ENST00000474136	ENST00000542230		TCGA	LD	HNSC	TCGA-CV-7410-01A	APP	chr21	27462259	-	TMEM50B	chr21	34841233	-
5CDS-5UTR	ENST00000334256	ENST00000326448		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5CDS-intron	ENST00000334256	ENST00000483465		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5CDS-5UTR	ENST00000334256	ENST00000496589		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5CDS-5UTR	ENST00000334256	ENST00000477495		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-5UTR	ENST00000469804	ENST00000326448		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-intron	ENST00000469804	ENST00000483465		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-5UTR	ENST00000469804	ENST00000496589		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-5UTR	ENST00000469804	ENST00000477495		TCGA	LD	HNSC	TCGA-CV-7413-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
In-frame	ENST00000375512	ENST00000375543		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
In-frame	ENST00000375512	ENST00000375544		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
In-frame	ENST00000375512	ENST00000395538		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
5CDS-intron	ENST00000375512	ENST00000450139		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
intron-3CDS	ENST00000356884	ENST00000375543		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
intron-3CDS	ENST00000356884	ENST00000375544		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
intron-3CDS	ENST00000356884	ENST00000395538		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
intron-intron	ENST00000356884	ENST00000450139		TCGA	LD	HNSC	TCGA-CV-7414-01A	BICD2	chr9	95477535	-	ASPN	chr9	95228853	-
Frame-shit	ENST00000296585	ENST00000296684		TCGA	LD	HNSC	TCGA-CV-7414-01A	ITGA2	chr5	52285362	+	NDUFS4	chr5	52942063	+
5CDS-intron	ENST00000396720	ENST00000542455		TCGA	LD	HNSC	TCGA-CV-7415-01A	GLTSCR1	chr19	48177019	+	ZNF793	chr19	38039264	+
5CDS-intron	ENST00000396720	ENST00000587143		TCGA	LD	HNSC	TCGA-CV-7415-01A	GLTSCR1	chr19	48177019	+	ZNF793	chr19	38039264	+
5CDS-intron	ENST00000396720	ENST00000588578		TCGA	LD	HNSC	TCGA-CV-7415-01A	GLTSCR1	chr19	48177019	+	ZNF793	chr19	38039264	+
5CDS-intron	ENST00000396720	ENST00000587986		TCGA	LD	HNSC	TCGA-CV-7415-01A	GLTSCR1	chr19	48177019	+	ZNF793	chr19	38039264	+
5CDS-intron	ENST00000396720	ENST00000589319		TCGA	LD	HNSC	TCGA-CV-7415-01A	GLTSCR1	chr19	48177019	+	ZNF793	chr19	38039264	+
5CDS-intron	ENST00000396720	ENST00000445217		TCGA	LD	HNSC	TCGA-CV-7415-01A	GLTSCR1	chr19	48177019	+	ZNF793	chr19	38039264	+
5UTR-3CDS	ENST00000265755	ENST00000248553		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
5UTR-5UTR	ENST00000265755	ENST00000429938		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
5UTR-3CDS	ENST00000455841	ENST00000248553		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
5UTR-5UTR	ENST00000455841	ENST00000429938		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
5UTR-3CDS	ENST00000424337	ENST00000248553		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
5UTR-5UTR	ENST00000424337	ENST00000429938		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
intron-3CDS	ENST00000476977	ENST00000248553		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
intron-5UTR	ENST00000476977	ENST00000429938		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
intron-3CDS	ENST00000489094	ENST00000248553		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
intron-5UTR	ENST00000489094	ENST00000429938		TCGA	LD	HNSC	TCGA-CV-7415-01A	GTF2IRD1	chr7	73868506	+	HSPB1	chr7	75933119	+
intron-3CDS	ENST00000367069	ENST00000325102		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000367069	ENST00000245551		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000367069	ENST00000579297		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000367069	ENST00000577542		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000367069	ENST00000580571		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000367069	ENST00000579119		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-intron	ENST00000367069	ENST00000578305		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000607398	ENST00000325102		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000607398	ENST00000245551		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000607398	ENST00000579297		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000607398	ENST00000577542		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000607398	ENST00000580571		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000607398	ENST00000579119		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-intron	ENST00000607398	ENST00000578305		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000449822	ENST00000325102		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000449822	ENST00000245551		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000449822	ENST00000579297		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000449822	ENST00000577542		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000449822	ENST00000580571		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000449822	ENST00000579119		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-intron	ENST00000449822	ENST00000578305		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000297262	ENST00000325102		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000297262	ENST00000245551		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000297262	ENST00000579297		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000297262	ENST00000577542		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000297262	ENST00000580571		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000297262	ENST00000579119		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-intron	ENST00000297262	ENST00000578305		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000252655	ENST00000325102		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000252655	ENST00000245551		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000252655	ENST00000579297		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000252655	ENST00000577542		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000252655	ENST00000580571		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-3CDS	ENST00000252655	ENST00000579119		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
intron-intron	ENST00000252655	ENST00000578305		TCGA	LD	HNSC	TCGA-CV-7416-01A	RSPH3	chr6	159420744	-	MIF4GD	chr17	73264273	-
Frame-shit	ENST00000335255	ENST00000269373		TCGA	LD	HNSC	TCGA-CV-7418-01A	FOXK2	chr17	80540810	+	FN3KRP	chr17	80684356	+
Frame-shit	ENST00000335255	ENST00000535965		TCGA	LD	HNSC	TCGA-CV-7418-01A	FOXK2	chr17	80540810	+	FN3KRP	chr17	80684356	+
intron-3CDS	ENST00000529652	ENST00000269373		TCGA	LD	HNSC	TCGA-CV-7418-01A	FOXK2	chr17	80540810	+	FN3KRP	chr17	80684356	+
intron-3CDS	ENST00000529652	ENST00000535965		TCGA	LD	HNSC	TCGA-CV-7418-01A	FOXK2	chr17	80540810	+	FN3KRP	chr17	80684356	+
In-frame	ENST00000441310	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000441310	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000441310	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
5CDS-intron	ENST00000441310	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000418224	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000418224	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000418224	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
5CDS-intron	ENST00000418224	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000409823	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000409823	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000409823	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
5CDS-intron	ENST00000409823	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000421722	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000421722	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000421722	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-intron	ENST00000421722	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000447232	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000447232	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000447232	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
5CDS-intron	ENST00000447232	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000432292	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000432292	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
In-frame	ENST00000432292	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
5CDS-intron	ENST00000432292	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000409985	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000409985	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000409985	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-intron	ENST00000409985	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000374826	ENST00000392332		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000374826	ENST00000359678		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000374826	ENST00000410045		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-intron	ENST00000374826	ENST00000486981		TCGA	LD	HNSC	TCGA-CV-7418-01A	PMS1	chr2	190738382	+	HIBCH	chr2	191110938	-
intron-3CDS	ENST00000332509	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000332509	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000335539	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000335539	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000402064	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000402064	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000490473	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000490473	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000436218	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000436218	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000447598	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000447598	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000435484	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000435484	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000417303	ENST00000405555		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
intron-3CDS	ENST00000417303	ENST00000266214		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLA2G6	chr22	38538057	-	SCARF2	chr22	20780307	-
5UTR-intron	ENST00000270189	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000270189	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000429089	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000429089	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000220809	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000220809	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000352041	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000352041	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000519510	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000519510	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000429710	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000429710	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000524009	ENST00000400522		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
5UTR-intron	ENST00000524009	ENST00000524882		TCGA	LD	HNSC	TCGA-CV-7421-01A	PLAT	chr8	42065012	-	EFCAB8	chr20	31531442	+
intron-3CDS	ENST00000528190	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000528190	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000528190	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000528190	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000528190	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-intron	ENST00000528190	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000393389	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000393389	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000393389	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000393389	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000393389	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000393389	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5UTR-3CDS	ENST00000528722	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5UTR-3CDS	ENST00000528722	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5UTR-3CDS	ENST00000528722	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5UTR-3CDS	ENST00000528722	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5UTR-3CDS	ENST00000528722	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5UTR-intron	ENST00000528722	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000260047	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000260047	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000260047	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000260047	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000260047	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000260047	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000526731	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000526731	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000526731	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000526731	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000526731	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000526731	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000531895	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000531895	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000531895	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000531895	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000531895	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000531895	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000393392	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000393392	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000393392	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000393392	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000393392	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-intron	ENST00000393392	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000533342	ENST00000532317		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000533342	ENST00000526033		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000533342	ENST00000393346		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000533342	ENST00000528398		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
In-frame	ENST00000533342	ENST00000356360		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000533342	ENST00000528411		TCGA	LD	HNSC	TCGA-CV-7422-01A	ANKRD42	chr11	82909684	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000451320	ENST00000357067		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000451320	ENST00000438320		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000451320	ENST00000510370		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-intron	ENST00000451320	ENST00000513383		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-3CDS	ENST00000429148	ENST00000357067		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000429148	ENST00000438320		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000429148	ENST00000510370		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-intron	ENST00000429148	ENST00000513383		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-3CDS	ENST00000353617	ENST00000357067		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-5UTR	ENST00000353617	ENST00000438320		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-5UTR	ENST00000353617	ENST00000510370		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-intron	ENST00000353617	ENST00000513383		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-3CDS	ENST00000405727	ENST00000357067		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000405727	ENST00000438320		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000405727	ENST00000510370		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-intron	ENST00000405727	ENST00000513383		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-3CDS	ENST00000356064	ENST00000357067		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-5UTR	ENST00000356064	ENST00000438320		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-5UTR	ENST00000356064	ENST00000510370		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
5UTR-intron	ENST00000356064	ENST00000513383		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-3CDS	ENST00000511289	ENST00000357067		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000511289	ENST00000438320		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-5UTR	ENST00000511289	ENST00000510370		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
intron-intron	ENST00000511289	ENST00000513383		TCGA	LD	HNSC	TCGA-CV-7422-01A	ARFIP1	chr4	153701378	+	DCTD	chr4	183836728	-
In-frame	ENST00000265742	ENST00000351004		TCGA	LD	HNSC	TCGA-CV-7424-01A	ANKIB1	chr7	92021606	+	GNAI1	chr7	79828541	+
In-frame	ENST00000265742	ENST00000457358		TCGA	LD	HNSC	TCGA-CV-7424-01A	ANKIB1	chr7	92021606	+	GNAI1	chr7	79828541	+
5CDS-intron	ENST00000265742	ENST00000490206		TCGA	LD	HNSC	TCGA-CV-7424-01A	ANKIB1	chr7	92021606	+	GNAI1	chr7	79828541	+
intron-3CDS	ENST00000486698	ENST00000351004		TCGA	LD	HNSC	TCGA-CV-7424-01A	ANKIB1	chr7	92021606	+	GNAI1	chr7	79828541	+
intron-3CDS	ENST00000486698	ENST00000457358		TCGA	LD	HNSC	TCGA-CV-7424-01A	ANKIB1	chr7	92021606	+	GNAI1	chr7	79828541	+
intron-intron	ENST00000486698	ENST00000490206		TCGA	LD	HNSC	TCGA-CV-7424-01A	ANKIB1	chr7	92021606	+	GNAI1	chr7	79828541	+
intron-3CDS	ENST00000428417	ENST00000376030		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000428417	ENST00000503743		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000428417	ENST00000422387		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000428417	ENST00000361144		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000428417	ENST00000400798		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000428417	ENST00000400797		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000376014	ENST00000376030		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000376014	ENST00000503743		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000376014	ENST00000422387		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000376014	ENST00000361144		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000376014	ENST00000400798		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
intron-3CDS	ENST00000376014	ENST00000400797		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000400796	ENST00000376030		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000400796	ENST00000503743		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000400796	ENST00000422387		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000400796	ENST00000361144		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000400796	ENST00000400798		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000400796	ENST00000400797		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000434578	ENST00000376030		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000434578	ENST00000503743		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000434578	ENST00000422387		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000434578	ENST00000361144		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000434578	ENST00000400798		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000434578	ENST00000400797		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000376008	ENST00000376030		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000376008	ENST00000503743		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000376008	ENST00000422387		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000376008	ENST00000361144		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000376008	ENST00000400798		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
5UTR-3CDS	ENST00000376008	ENST00000400797		TCGA	LD	HNSC	TCGA-CV-7428-01A	TMEM51	chr1	15480450	+	KAZN	chr1	15370485	+
In-frame	ENST00000521015	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000521015	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000521015	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
In-frame	ENST00000256398	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000256398	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000256398	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
In-frame	ENST00000542181	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000542181	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000542181	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000523760	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
intron-intron	ENST00000523760	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
intron-intron	ENST00000523760	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
In-frame	ENST00000524103	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000524103	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000524103	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
In-frame	ENST00000537665	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000537665	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000537665	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
In-frame	ENST00000380353	ENST00000261839		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000380353	ENST00000443683		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
5CDS-intron	ENST00000380353	ENST00000541028		TCGA	LD	HNSC	TCGA-CV-7430-01A	ELP3	chr8	28016150	+	MYO5C	chr15	52500840	-
Frame-shit	ENST00000329399	ENST00000371227		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371249		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000306402		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000353505		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371246		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000347291		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000393949		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371247		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000607232		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371245		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000361941		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000277982		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000354106		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371239		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371241		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5CDS-intron	ENST00000329399	ENST00000474353		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371227		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371249		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000306402		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000353505		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371246		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000347291		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000393949		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371247		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000607232		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371245		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000361941		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000277982		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000354106		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371239		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-3CDS	ENST00000477757	ENST00000371241		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
5UTR-intron	ENST00000477757	ENST00000474353		TCGA	LD	HNSC	TCGA-CV-7430-01A	PDLIM1	chr10	97023621	-	SORBS1	chr10	97081778	-
In-frame	ENST00000356082	ENST00000222553		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
5CDS-intron	ENST00000356082	ENST00000354289		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
5CDS-intron	ENST00000356082	ENST00000484527		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
Frame-shit	ENST00000391911	ENST00000222553		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
5CDS-intron	ENST00000391911	ENST00000354289		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
5CDS-intron	ENST00000391911	ENST00000484527		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
In-frame	ENST00000367030	ENST00000222553		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
5CDS-intron	ENST00000367030	ENST00000354289		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
5CDS-intron	ENST00000367030	ENST00000484527		TCGA	LD	HNSC	TCGA-CV-7433-01A	LAMB3	chr1	209795881	-	NAMPT	chr7	105894950	-
Frame-shit	ENST00000356462	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000356462	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
Frame-shit	ENST00000400345	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000400345	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000589054	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000589054	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5UTR-3CDS	ENST00000256832	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5UTR-5UTR	ENST00000256832	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
Frame-shit	ENST00000382850	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000382850	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
Frame-shit	ENST00000256830	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000256830	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
3UTR-3CDS	ENST00000588516	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
3UTR-5UTR	ENST00000588516	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5UTR-3CDS	ENST00000456986	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5UTR-5UTR	ENST00000456986	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5UTR-3CDS	ENST00000435432	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5UTR-5UTR	ENST00000435432	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
Frame-shit	ENST00000357895	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000357895	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
Frame-shit	ENST00000586263	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000586263	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000456173	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000456173	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000431212	ENST00000396981		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000431212	ENST00000572484		TCGA	LD	HNSC	TCGA-CV-7435-01A	NEDD4L	chr18	55833093	+	UBE2G1	chr17	4210418	-
5CDS-intron	ENST00000261207	ENST00000590652		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000261207	ENST00000587129		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000261207	ENST00000590842		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000261207	ENST00000334295		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000261207	ENST00000593035		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000261207	ENST00000383056		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000261207	ENST00000589049		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000590652		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000587129		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000590842		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000334295		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000593035		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000383056		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000450142	ENST00000589049		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000590652		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000587129		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000590842		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000334295		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000593035		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000383056		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000437004	ENST00000589049		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000590652		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000587129		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000590842		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000334295		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000593035		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000383056		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
intron-intron	ENST00000546369	ENST00000589049		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000590652		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000587129		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000590842		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000334295		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000593035		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000383056		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
5CDS-intron	ENST00000550107	ENST00000589049		TCGA	LD	HNSC	TCGA-CV-7438-01A	PPP1R12A	chr12	80328475	-	TPGS2	chr18	34398936	-
In-frame	ENST00000262189	ENST00000265755		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000262189	ENST00000455841		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000262189	ENST00000424337		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000262189	ENST00000476977		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
5CDS-intron	ENST00000262189	ENST00000489094		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000355193	ENST00000265755		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000355193	ENST00000455841		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000355193	ENST00000424337		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
In-frame	ENST00000355193	ENST00000476977		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
5CDS-intron	ENST00000355193	ENST00000489094		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485655	ENST00000265755		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485655	ENST00000455841		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485655	ENST00000424337		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485655	ENST00000476977		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-intron	ENST00000485655	ENST00000489094		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485241	ENST00000265755		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485241	ENST00000455841		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485241	ENST00000424337		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-3CDS	ENST00000485241	ENST00000476977		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
intron-intron	ENST00000485241	ENST00000489094		TCGA	LD	HNSC	TCGA-CV-7440-01A	KMT2C	chr7	151902191	-	GTF2IRD1	chr7	74004180	+
3UTR-3CDS	ENST00000261783	ENST00000287996		TCGA	LD	HNSC	TCGA-CV-7446-01A	ARG2	chr14	68118063	+	IPPK	chr9	95414921	-
3UTR-intron	ENST00000261783	ENST00000486841		TCGA	LD	HNSC	TCGA-CV-7446-01A	ARG2	chr14	68118063	+	IPPK	chr9	95414921	-
3UTR-intron	ENST00000261783	ENST00000375522		TCGA	LD	HNSC	TCGA-CV-7446-01A	ARG2	chr14	68118063	+	IPPK	chr9	95414921	-
intron-3CDS	ENST00000556491	ENST00000287996		TCGA	LD	HNSC	TCGA-CV-7446-01A	ARG2	chr14	68118063	+	IPPK	chr9	95414921	-
intron-intron	ENST00000556491	ENST00000486841		TCGA	LD	HNSC	TCGA-CV-7446-01A	ARG2	chr14	68118063	+	IPPK	chr9	95414921	-
intron-intron	ENST00000556491	ENST00000375522		TCGA	LD	HNSC	TCGA-CV-7446-01A	ARG2	chr14	68118063	+	IPPK	chr9	95414921	-
Frame-shit	ENST00000287996	ENST00000554659		TCGA	LD	HNSC	TCGA-CV-7446-01A	IPPK	chr9	95418738	-	VTI1B	chr14	68118198	-
intron-3CDS	ENST00000486841	ENST00000554659		TCGA	LD	HNSC	TCGA-CV-7446-01A	IPPK	chr9	95418738	-	VTI1B	chr14	68118198	-
intron-3CDS	ENST00000375522	ENST00000554659		TCGA	LD	HNSC	TCGA-CV-7446-01A	IPPK	chr9	95418738	-	VTI1B	chr14	68118198	-
5UTR-3CDS	ENST00000452400	ENST00000220849		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
5UTR-3CDS	ENST00000452400	ENST00000519030		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
5UTR-5UTR	ENST00000452400	ENST00000519517		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000267974	ENST00000220849		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000267974	ENST00000519030		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
intron-5UTR	ENST00000267974	ENST00000519517		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000524223	ENST00000220849		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000524223	ENST00000519030		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
intron-5UTR	ENST00000524223	ENST00000519517		TCGA	LD	HNSC	TCGA-CV-7446-01A	NCOA2	chr8	71315935	-	EIF3E	chr8	109215732	-
Frame-shit	ENST00000354764	ENST00000374423		TCGA	LD	HNSC	TCGA-CV-7568-01A	PGAP1	chr2	197735665	-	ZDBF2	chr2	207169441	+
Frame-shit	ENST00000409475	ENST00000374423		TCGA	LD	HNSC	TCGA-CV-7568-01A	PGAP1	chr2	197735665	-	ZDBF2	chr2	207169441	+
intron-3CDS	ENST00000409188	ENST00000374423		TCGA	LD	HNSC	TCGA-CV-7568-01A	PGAP1	chr2	197735665	-	ZDBF2	chr2	207169441	+
intron-3CDS	ENST00000485830	ENST00000374423		TCGA	LD	HNSC	TCGA-CV-7568-01A	PGAP1	chr2	197735665	-	ZDBF2	chr2	207169441	+
5CDS-intron	ENST00000230449	ENST00000398540		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000230449	ENST00000542259		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000230449	ENST00000497757		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000230449	ENST00000478263		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000448181	ENST00000398540		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000448181	ENST00000542259		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000448181	ENST00000497757		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
5CDS-intron	ENST00000448181	ENST00000478263		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
intron-intron	ENST00000475028	ENST00000398540		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
intron-intron	ENST00000475028	ENST00000542259		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
intron-intron	ENST00000475028	ENST00000497757		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
intron-intron	ENST00000475028	ENST00000478263		TCGA	LD	HNSC	TCGA-CV-A45P-01A	EXOC2	chr6	488979	-	FRMD4B	chr3	69385737	-
In-frame	ENST00000336755	ENST00000262544		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000336755	ENST00000336714		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000336755	ENST00000377475		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000336755	ENST00000377465		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
5CDS-intron	ENST00000336755	ENST00000494645		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000534928	ENST00000262544		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000534928	ENST00000336714		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000534928	ENST00000377475		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
In-frame	ENST00000534928	ENST00000377465		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
5CDS-intron	ENST00000534928	ENST00000494645		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
3UTR-3CDS	ENST00000461038	ENST00000262544		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
3UTR-3CDS	ENST00000461038	ENST00000336714		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
3UTR-3CDS	ENST00000461038	ENST00000377475		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
3UTR-3CDS	ENST00000461038	ENST00000377465		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
3UTR-intron	ENST00000461038	ENST00000494645		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
intron-3CDS	ENST00000322831	ENST00000262544		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
intron-3CDS	ENST00000322831	ENST00000336714		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
intron-3CDS	ENST00000322831	ENST00000377475		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
intron-3CDS	ENST00000322831	ENST00000377465		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
intron-intron	ENST00000322831	ENST00000494645		TCGA	LD	HNSC	TCGA-CV-A45T-01A	ZCCHC7	chr9	37327831	+	SEC23B	chr20	18522940	+
intron-3CDS	ENST00000438576	ENST00000312515		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000438576	ENST00000376991		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000438576	ENST00000527119		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000438576	ENST00000532933		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000449692	ENST00000312515		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000449692	ENST00000376991		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000449692	ENST00000527119		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000449692	ENST00000532933		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000530188	ENST00000312515		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000530188	ENST00000376991		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000530188	ENST00000527119		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
intron-3CDS	ENST00000530188	ENST00000532933		TCGA	LD	HNSC	TCGA-CV-A45U-01A	C11orf68	chr11	65686513	-	DRAP1	chr11	65687490	+
5UTR-3CDS	ENST00000286953	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000286953	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000286953	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000286953	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-3CDS	ENST00000554880	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-3CDS	ENST00000554880	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-3CDS	ENST00000554880	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
intron-intron	ENST00000554880	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000555030	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000555030	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000555030	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000555030	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000414262	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000414262	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000414262	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000414262	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000553430	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000553430	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000553430	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553430	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000557040	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000557040	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000557040	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000557040	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000553449	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000553449	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000553449	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000553449	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000554713	ENST00000546474		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000554713	ENST00000327359		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-3CDS	ENST00000554713	ENST00000440513		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000392557		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000379937		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000547530		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000446501		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000379932		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000551787		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000549044		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5UTR-intron	ENST00000554713	ENST00000548421		TCGA	LD	HNSC	TCGA-CV-A45W-01A	C14orf2	chr14	104387807	-	BRF1	chr14	105718916	-
5CDS-5UTR	ENST00000487273	ENST00000426742		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000487273	ENST00000265038		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
5CDS-intron	ENST00000487273	ENST00000462279		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
5CDS-5UTR	ENST00000487273	ENST00000543101		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000466936	ENST00000426742		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000466936	ENST00000265038		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-intron	ENST00000466936	ENST00000462279		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000466936	ENST00000543101		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000481513	ENST00000426742		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000481513	ENST00000265038		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-intron	ENST00000481513	ENST00000462279		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000481513	ENST00000543101		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000484143	ENST00000426742		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000484143	ENST00000265038		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-intron	ENST00000484143	ENST00000462279		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
intron-5UTR	ENST00000484143	ENST00000543101		TCGA	LD	HNSC	TCGA-CV-A45X-01A	ADAM9	chr8	38948865	+	ERCC8	chr5	60224786	-
Frame-shit	ENST00000400338	ENST00000215832		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000400338	ENST00000398822		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000400338	ENST00000544786		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
5CDS-5UTR	ENST00000400338	ENST00000491588		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000400335	ENST00000215832		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000400335	ENST00000398822		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000400335	ENST00000544786		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
5CDS-5UTR	ENST00000400335	ENST00000491588		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000327813	ENST00000215832		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000327813	ENST00000398822		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000327813	ENST00000544786		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
5CDS-5UTR	ENST00000327813	ENST00000491588		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000407188	ENST00000215832		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000407188	ENST00000398822		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000407188	ENST00000544786		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
5CDS-5UTR	ENST00000407188	ENST00000491588		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000479755	ENST00000215832		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000479755	ENST00000398822		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000479755	ENST00000544786		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
intron-5UTR	ENST00000479755	ENST00000491588		TCGA	LD	HNSC	TCGA-CV-A45X-01A	KREMEN1	chr22	29469215	+	MAPK1	chr22	22123609	-
5CDS-intron	ENST00000253925	ENST00000514361		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000503028		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000310092		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000396053		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000408993		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000578778		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000483858		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000398692		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000506523		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000530235		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000532968		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000253925	ENST00000409406		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-intron	ENST00000253925	ENST00000515838		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-intron	ENST00000389547	ENST00000514361		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000503028		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000310092		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000396053		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000408993		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000578778		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000483858		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000398692		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000506523		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000530235		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000532968		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-5UTR	ENST00000389547	ENST00000409406		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
5CDS-intron	ENST00000389547	ENST00000515838		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-intron	ENST00000530548	ENST00000514361		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000503028		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000310092		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000396053		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000408993		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000578778		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000483858		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000398692		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000506523		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000530235		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000532968		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-5UTR	ENST00000530548	ENST00000409406		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-intron	ENST00000530548	ENST00000515838		TCGA	LD	HNSC	TCGA-CV-A45X-01A	PPFIA1	chr11	70118542	+	RBM4	chr11	66407171	+
intron-3CDS	ENST00000442339	ENST00000550433		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000548513		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000549446		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000298972		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000341669		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000350228		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000540018		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000442339	ENST00000393288		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000442339	ENST00000548243		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000550433		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000548513		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000549446		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000298972		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000341669		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000350228		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000540018		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409004	ENST00000393288		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000409004	ENST00000548243		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000550433		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000548513		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000549446		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000298972		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000341669		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000350228		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000540018		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409799	ENST00000393288		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000409799	ENST00000548243		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000550433		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000548513		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000549446		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000298972		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000341669		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000350228		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000540018		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000409445	ENST00000393288		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000409445	ENST00000548243		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000550433		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000548513		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000549446		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000298972		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000341669		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000350228		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000540018		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000393284	ENST00000393288		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000393284	ENST00000548243		TCGA	LD	HNSC	TCGA-CV-A45Y-01A	CAPS2	chr12	75764859	-	KCNC2	chr12	75445097	-
5CDS-3UTR	ENST00000357066	ENST00000585548		TCGA	LD	HNSC	TCGA-CV-A461-01A	MOB3A	chr19	2078139	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000357066	ENST00000317060		TCGA	LD	HNSC	TCGA-CV-A461-01A	MOB3A	chr19	2078139	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000592143	ENST00000585548		TCGA	LD	HNSC	TCGA-CV-A461-01A	MOB3A	chr19	2078139	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000592143	ENST00000317060		TCGA	LD	HNSC	TCGA-CV-A461-01A	MOB3A	chr19	2078139	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592280	ENST00000585548		TCGA	LD	HNSC	TCGA-CV-A461-01A	MOB3A	chr19	2078139	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592280	ENST00000317060		TCGA	LD	HNSC	TCGA-CV-A461-01A	MOB3A	chr19	2078139	-	DAND5	chr19	13084203	+
In-frame	ENST00000457913	ENST00000358015		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000457913	ENST00000416373		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000277225	ENST00000358015		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000277225	ENST00000416373		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000441147	ENST00000358015		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000441147	ENST00000416373		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000542028	ENST00000358015		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
In-frame	ENST00000542028	ENST00000416373		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000497489	ENST00000358015		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000497489	ENST00000416373		TCGA	LD	HNSC	TCGA-CV-A464-01A	ZNF462	chr9	109746690	+	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000410042	ENST00000327896		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
intron-3CDS	ENST00000410042	ENST00000417561		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
intron-3CDS	ENST00000410042	ENST00000490605		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
intron-intron	ENST00000410042	ENST00000393526		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
intron-intron	ENST00000410042	ENST00000470789		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000338148	ENST00000327896		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000338148	ENST00000417561		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000338148	ENST00000490605		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-intron	ENST00000338148	ENST00000393526		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-intron	ENST00000338148	ENST00000470789		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000409145	ENST00000327896		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000409145	ENST00000417561		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000409145	ENST00000490605		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-intron	ENST00000409145	ENST00000393526		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-intron	ENST00000409145	ENST00000470789		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
3UTR-3CDS	ENST00000465432	ENST00000327896		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
3UTR-3CDS	ENST00000465432	ENST00000417561		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
3UTR-3CDS	ENST00000465432	ENST00000490605		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
3UTR-intron	ENST00000465432	ENST00000393526		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
3UTR-intron	ENST00000465432	ENST00000470789		TCGA	LD	HNSC	TCGA-CV-A465-01A	MRPL30	chr2	99797712	+	FAM178B	chr2	97626177	-
5UTR-3CDS	ENST00000395957	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-3CDS	ENST00000395957	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-intron	ENST00000395957	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-intron	ENST00000395957	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-3CDS	ENST00000395958	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-3CDS	ENST00000395958	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-intron	ENST00000395958	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-intron	ENST00000395958	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000457309	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000457309	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000457309	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000457309	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395956	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395956	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395956	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395956	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000353245	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000353245	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000353245	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000353245	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000522542	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000522542	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000522542	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000522542	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-3CDS	ENST00000521309	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-3CDS	ENST00000521309	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-intron	ENST00000521309	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
5UTR-intron	ENST00000521309	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000522819	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000522819	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000522819	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000522819	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395953	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395953	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395953	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395953	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395948	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395948	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395948	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395948	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395951	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000395951	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395951	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000395951	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000419477	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000419477	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000419477	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000419477	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000492736	ENST00000377351		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-3CDS	ENST00000492736	ENST00000335972		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000492736	ENST00000490869		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
intron-intron	ENST00000492736	ENST00000377269		TCGA	LD	HNSC	TCGA-CV-A6JD-01A	YWHAZ	chr8	101964157	-	UBA1	chrX	47058202	+
In-frame	ENST00000358691	ENST00000356126		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
Frame-shit	ENST00000358691	ENST00000357146		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
5CDS-intron	ENST00000358691	ENST00000581618		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
In-frame	ENST00000580168	ENST00000356126		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
Frame-shit	ENST00000580168	ENST00000357146		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
5CDS-intron	ENST00000580168	ENST00000581618		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
intron-3CDS	ENST00000580662	ENST00000356126		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
intron-3CDS	ENST00000580662	ENST00000357146		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
intron-intron	ENST00000580662	ENST00000581618		TCGA	LD	HNSC	TCGA-CV-A6JE-01A	HELZ	chr17	65147162	-	PSMD12	chr17	65337168	-
Frame-shit	ENST00000346329	ENST00000476844		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000346329	ENST00000492590		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000346329	ENST00000466788		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000346329	ENST00000468189		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000346329	ENST00000341848		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000301843	ENST00000476844		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000301843	ENST00000492590		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000301843	ENST00000466788		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000301843	ENST00000468189		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000301843	ENST00000341848		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
intron-3CDS	ENST00000527622	ENST00000476844		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
intron-3CDS	ENST00000527622	ENST00000492590		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
intron-5UTR	ENST00000527622	ENST00000466788		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
intron-5UTR	ENST00000527622	ENST00000468189		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
intron-5UTR	ENST00000527622	ENST00000341848		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000376561	ENST00000476844		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000376561	ENST00000492590		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000376561	ENST00000466788		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000376561	ENST00000468189		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000376561	ENST00000341848		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000538675	ENST00000476844		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
Frame-shit	ENST00000538675	ENST00000492590		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000538675	ENST00000466788		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000538675	ENST00000468189		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-5UTR	ENST00000538675	ENST00000341848		TCGA	LD	HNSC	TCGA-CV-A6JN-01A	CTTN	chr11	70269101	+	FHIT	chr3	59999801	-
5CDS-intron	ENST00000357674	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000357674	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000314062	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000314062	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000346964	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000346964	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000419354	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000419354	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000452595	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000452595	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000422288	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000422288	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000448528	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000448528	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000443183	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000443183	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000450955	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000450955	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000392382	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-intron	ENST00000392382	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
intron-intron	ENST00000485409	ENST00000232003		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
intron-intron	ENST00000485409	ENST00000468154		TCGA	LD	HNSC	TCGA-CX-7082-01A	DLG1	chr3	196831774	-	HRG	chr3	186391697	+
5CDS-5UTR	ENST00000374980	ENST00000519476		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000374980	ENST00000297720		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000374980	ENST00000524874		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000374980	ENST00000379957		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000374980	ENST00000523983		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
5CDS-intron	ENST00000374980	ENST00000527710		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
5CDS-intron	ENST00000374980	ENST00000528827		TCGA	LD	HNSC	TCGA-CX-7082-01A	EIF2S2	chr20	32699902	-	LETM2	chr8	38245468	+
Frame-shit	ENST00000344663	ENST00000398665		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
5CDS-intron	ENST00000344663	ENST00000608122		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
Frame-shit	ENST00000591806	ENST00000398665		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
5CDS-intron	ENST00000591806	ENST00000608122		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
Frame-shit	ENST00000311401	ENST00000398665		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
5CDS-intron	ENST00000311401	ENST00000608122		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
Frame-shit	ENST00000415183	ENST00000398665		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
5CDS-intron	ENST00000415183	ENST00000608122		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
intron-3CDS	ENST00000591453	ENST00000398665		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
intron-intron	ENST00000591453	ENST00000608122		TCGA	LD	HNSC	TCGA-CX-7082-01A	MUM1	chr19	1360257	+	DOT1L	chr19	2220107	+
In-frame	ENST00000334534	ENST00000460006		TCGA	LD	HNSC	TCGA-CX-7082-01A	SLX4IP	chr20	10582467	+	CDS2	chr20	5154169	+
5CDS-intron	ENST00000334534	ENST00000379062		TCGA	LD	HNSC	TCGA-CX-7082-01A	SLX4IP	chr20	10582467	+	CDS2	chr20	5154169	+
5CDS-intron	ENST00000334534	ENST00000379070		TCGA	LD	HNSC	TCGA-CX-7082-01A	SLX4IP	chr20	10582467	+	CDS2	chr20	5154169	+
5CDS-intron	ENST00000334534	ENST00000535100		TCGA	LD	HNSC	TCGA-CX-7082-01A	SLX4IP	chr20	10582467	+	CDS2	chr20	5154169	+
intron-3CDS	ENST00000368748	ENST00000360379		TCGA	LD	HNSC	TCGA-CX-7085-01A	SPRR2G	chr1	153122490	-	SPRR2D	chr1	153012767	-
intron-3CDS	ENST00000368748	ENST00000368758		TCGA	LD	HNSC	TCGA-CX-7085-01A	SPRR2G	chr1	153122490	-	SPRR2D	chr1	153012767	-
intron-3CDS	ENST00000368748	ENST00000368757		TCGA	LD	HNSC	TCGA-CX-7085-01A	SPRR2G	chr1	153122490	-	SPRR2D	chr1	153012767	-
intron-3CDS	ENST00000368748	ENST00000368756		TCGA	LD	HNSC	TCGA-CX-7085-01A	SPRR2G	chr1	153122490	-	SPRR2D	chr1	153012767	-
5CDS-intron	ENST00000305877	ENST00000413389		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000305877	ENST00000326010		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000305877	ENST00000382760		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000305877	ENST00000498140		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000359540	ENST00000413389		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000359540	ENST00000326010		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000359540	ENST00000382760		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000359540	ENST00000498140		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000398512	ENST00000413389		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000398512	ENST00000326010		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000398512	ENST00000382760		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
5CDS-intron	ENST00000398512	ENST00000498140		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
intron-intron	ENST00000436990	ENST00000413389		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
intron-intron	ENST00000436990	ENST00000326010		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
intron-intron	ENST00000436990	ENST00000382760		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
intron-intron	ENST00000436990	ENST00000498140		TCGA	LD	HNSC	TCGA-CX-7086-01A	BCR	chr22	23524426	+	UPB1	chr22	24896075	+
Frame-shit	ENST00000368790	ENST00000392653		TCGA	LD	HNSC	TCGA-CX-7086-01A	CRCT1	chr1	152488486	+	SPRR2A	chr1	153029129	-
In-frame	ENST00000403222	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000403222	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000407373	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000332585	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000382310	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000446658	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000401475	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
In-frame	ENST00000437268	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000535268	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000347330		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000413209		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000338641		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000403435		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000361452		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000403999		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000334961		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000353887		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000361166		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000397789		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-3CDS	ENST00000496575	ENST00000361676		TCGA	LD	HNSC	TCGA-CX-7086-01A	OSBP2	chr22	31266669	+	NF2	chr22	30038191	+
intron-intron	ENST00000359543	ENST00000260197		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000359543	ENST00000532451		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000359543	ENST00000525532		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000359543	ENST00000532694		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000359543	ENST00000534286		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-5UTR	ENST00000359543	ENST00000527934		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000566033	ENST00000260197		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000566033	ENST00000532451		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000566033	ENST00000525532		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000566033	ENST00000532694		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000566033	ENST00000534286		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-5UTR	ENST00000566033	ENST00000527934		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000536829	ENST00000260197		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000536829	ENST00000532451		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000536829	ENST00000525532		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000536829	ENST00000532694		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-intron	ENST00000536829	ENST00000534286		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-5UTR	ENST00000536829	ENST00000527934		TCGA	LD	HNSC	TCGA-CX-7219-01A	EMP2	chr16	10626061	-	SORL1	chr11	121461197	+
intron-5UTR	ENST00000421834	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000421834	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000421834	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000421834	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000421834	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000370769	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370769	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370769	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370769	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370769	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000312431	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000312431	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000312431	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000312431	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000312431	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000370754	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370754	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370754	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370754	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370754	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000370788	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370788	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370788	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370788	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370788	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000361203	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000361203	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000361203	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000361203	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000361203	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000244364	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000244364	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000244364	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000244364	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000244364	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000446842	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000446842	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000446842	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000446842	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000446842	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000340834	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000340834	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000340834	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000340834	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000340834	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000370765	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370765	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370765	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370765	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000370765	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-5UTR	ENST00000518935	ENST00000380749		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000518935	ENST00000361263		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000518935	ENST00000380748		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000518935	ENST00000489072		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
intron-intron	ENST00000518935	ENST00000380747		TCGA	LD	HNSC	TCGA-D6-6517-01A	DST	chr6	56323168	-	HMGN1	chr21	40720983	-
Frame-shit	ENST00000334047	ENST00000346672		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000360962		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000527634		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000540737		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000532565		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000525449		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000334047	ENST00000527368		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000346672		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000360962		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000527634		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000540737		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000532565		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000525449		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000370207	ENST00000527368		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000346672		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000360962		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000527634		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000540737		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000532565		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000525449		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-intron	ENST00000480356	ENST00000527368		TCGA	LD	HNSC	TCGA-D6-6517-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-intron	ENST00000579419	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000579419	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000579419	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000579419	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000357896	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000357896	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000357896	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000357896	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000395418	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000395418	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000395418	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000395418	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000585089	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000585089	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000585089	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000585089	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000585313	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000585313	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000585313	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000585313	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000578122	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000578122	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000578122	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000578122	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000578985	ENST00000431468		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-intron	ENST00000578985	ENST00000438614		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000578985	ENST00000536498		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
5UTR-5UTR	ENST00000578985	ENST00000226218		TCGA	LD	HNSC	TCGA-D6-6517-01A	IFT20	chr17	26662366	-	VTN	chr17	26697291	-
Frame-shit	ENST00000356082	ENST00000409581		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000356082	ENST00000337386		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000356082	ENST00000357215		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000356082	ENST00000409641		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000356082	ENST00000545490		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
5CDS-intron	ENST00000356082	ENST00000484774		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000391911	ENST00000409581		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000391911	ENST00000337386		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000391911	ENST00000357215		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000391911	ENST00000409641		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000391911	ENST00000545490		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
5CDS-intron	ENST00000391911	ENST00000484774		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000367030	ENST00000409581		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000367030	ENST00000337386		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000367030	ENST00000357215		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000367030	ENST00000409641		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
Frame-shit	ENST00000367030	ENST00000545490		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
5CDS-intron	ENST00000367030	ENST00000484774		TCGA	LD	HNSC	TCGA-D6-6825-01A	LAMB3	chr1	209795881	-	NAB1	chr2	191537827	+
In-frame	ENST00000399975	ENST00000373973		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000399975	ENST00000349339		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000399975	ENST00000538900		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000399976	ENST00000373973		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000399976	ENST00000349339		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000399976	ENST00000538900		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000334352	ENST00000373973		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000334352	ENST00000349339		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
In-frame	ENST00000334352	ENST00000538900		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000535828	ENST00000373973		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000535828	ENST00000349339		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000535828	ENST00000538900		TCGA	LD	HNSC	TCGA-D6-6825-01A	USP16	chr21	30403094	+	CNBD2	chr20	34560551	+
Frame-shit	ENST00000522208	ENST00000355235		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
Frame-shit	ENST00000522208	ENST00000356834		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000522208	ENST00000518085		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000522208	ENST00000519746		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000522208	ENST00000444477		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
Frame-shit	ENST00000521389	ENST00000355235		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
Frame-shit	ENST00000521389	ENST00000356834		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000521389	ENST00000518085		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000521389	ENST00000519746		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000521389	ENST00000444477		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
Frame-shit	ENST00000261947	ENST00000355235		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
Frame-shit	ENST00000261947	ENST00000356834		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000261947	ENST00000518085		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000261947	ENST00000519746		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-intron	ENST00000261947	ENST00000444477		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
intron-3CDS	ENST00000520564	ENST00000355235		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
intron-3CDS	ENST00000520564	ENST00000356834		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
intron-intron	ENST00000520564	ENST00000518085		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
intron-intron	ENST00000520564	ENST00000519746		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
intron-intron	ENST00000520564	ENST00000444477		TCGA	LD	HNSC	TCGA-D6-6826-01A	RNF130	chr5	179440061	-	TBC1D9B	chr5	179331812	-
5CDS-5UTR	ENST00000392650	ENST00000335793		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000392650	ENST00000439510		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000392650	ENST00000581014		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000392650	ENST00000582303		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000388726	ENST00000335793		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000388726	ENST00000439510		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000388726	ENST00000581014		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000388726	ENST00000582303		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000410094	ENST00000335793		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000410094	ENST00000439510		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000410094	ENST00000581014		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000410094	ENST00000582303		TCGA	LD	HNSC	TCGA-D6-6826-01A	SDK2	chr17	71361397	-	CDC42EP4	chr17	71282751	-
intron-3CDS	ENST00000541478	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000541478	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000541478	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000541478	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000541478	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000541478	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
Frame-shit	ENST00000535715	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
Frame-shit	ENST00000535715	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
Frame-shit	ENST00000535715	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
Frame-shit	ENST00000535715	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
Frame-shit	ENST00000535715	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
5CDS-5UTR	ENST00000535715	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000422031	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000422031	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000422031	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000422031	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000422031	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000422031	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000428192	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000428192	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000428192	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000428192	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000428192	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000428192	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000538426	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000538426	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000538426	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000538426	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000538426	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000538426	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543004	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543004	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543004	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543004	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543004	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000543004	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000536443	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000536443	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000536443	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000536443	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000536443	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000536443	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543988	ENST00000368373		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543988	ENST00000327247		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543988	ENST00000427500		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543988	ENST00000536770		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-3CDS	ENST00000543988	ENST00000428024		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
intron-5UTR	ENST00000543988	ENST00000493842		TCGA	LD	HNSC	TCGA-D6-8568-01A	OTUB1	chr11	63768992	+	GBA	chr1	155208441	-
5CDS-3UTR	ENST00000371817	ENST00000334208		TCGA	LD	HNSC	TCGA-D6-8569-01A	COL5A1	chr9	137664680	+	SPATA31D3	chr9	84561383	+
intron-3UTR	ENST00000464187	ENST00000334208		TCGA	LD	HNSC	TCGA-D6-8569-01A	COL5A1	chr9	137664680	+	SPATA31D3	chr9	84561383	+
5CDS-intron	ENST00000406697	ENST00000281171		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000348962		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000542557		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000544244		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000445537		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000442921		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000543886		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000406697	ENST00000544706		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000281171		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000348962		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000542557		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000544244		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000445537		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000442921		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000543886		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000328916	ENST00000544706		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000281171		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000348962		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000542557		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000544244		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000445537		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000442921		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000543886		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5CDS-intron	ENST00000360817	ENST00000544706		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000281171		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000348962		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000542557		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000544244		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000445537		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000442921		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000543886		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
5UTR-intron	ENST00000402681	ENST00000544706		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000281171		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000348962		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000542557		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000544244		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000445537		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000442921		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000543886		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-intron	ENST00000495061	ENST00000544706		TCGA	LD	HNSC	TCGA-D6-A4ZB-01A	C1S	chr12	7170371	+	PTPRO	chr12	15563214	+
intron-5UTR	ENST00000296181	ENST00000398056		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000296181	ENST00000522444		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000296181	ENST00000398054		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000296181	ENST00000381840		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000296181	ENST00000381841		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000296181	ENST00000427924		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000296181	ENST00000518650		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000398056		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000522444		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000398054		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000381840		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000381841		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000427924		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000461306	ENST00000518650		TCGA	LD	HNSC	TCGA-D6-A6EM-01A	ITGB5	chr3	124620113	-	FGL1	chr8	17743080	-
In-frame	ENST00000445930	ENST00000550347		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
In-frame	ENST00000445930	ENST00000420613		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
5CDS-5UTR	ENST00000445930	ENST00000548701		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
5CDS-5UTR	ENST00000445930	ENST00000553086		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
5CDS-intron	ENST00000445930	ENST00000357861		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
In-frame	ENST00000606149	ENST00000550347		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
In-frame	ENST00000606149	ENST00000420613		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
5CDS-5UTR	ENST00000606149	ENST00000548701		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
5CDS-5UTR	ENST00000606149	ENST00000553086		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
5CDS-intron	ENST00000606149	ENST00000357861		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
intron-3CDS	ENST00000557557	ENST00000550347		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
intron-3CDS	ENST00000557557	ENST00000420613		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
intron-5UTR	ENST00000557557	ENST00000548701		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
intron-5UTR	ENST00000557557	ENST00000553086		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
intron-intron	ENST00000557557	ENST00000357861		TCGA	LD	HNSC	TCGA-D6-A6ES-01A	PSMC6	chr14	53178242	+	KANSL2	chr12	49048843	-
intron-3CDS	ENST00000383440	ENST00000339486		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000383440	ENST00000581585		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000383440	ENST00000577501		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000262126	ENST00000339486		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000262126	ENST00000581585		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000262126	ENST00000577501		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000540578	ENST00000339486		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000540578	ENST00000581585		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000540578	ENST00000577501		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
5UTR-3CDS	ENST00000400020	ENST00000339486		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
5UTR-3CDS	ENST00000400020	ENST00000581585		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
5UTR-3CDS	ENST00000400020	ENST00000577501		TCGA	LD	HNSC	TCGA-D6-A74Q-01A	ANKRD12	chr18	9137871	+	RIOK3	chr18	21042928	+
Frame-shit	ENST00000266483	ENST00000548547		TCGA	LD	HNSC	TCGA-DQ-5624-01A	ALG10	chr12	34177094	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000266483	ENST00000301464		TCGA	LD	HNSC	TCGA-DQ-5624-01A	ALG10	chr12	34177094	+	IGFBP6	chr12	53495829	+
5CDS-3UTR	ENST00000266483	ENST00000549628		TCGA	LD	HNSC	TCGA-DQ-5624-01A	ALG10	chr12	34177094	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000538927	ENST00000548547		TCGA	LD	HNSC	TCGA-DQ-5624-01A	ALG10	chr12	34177094	+	IGFBP6	chr12	53495829	+
Frame-shit	ENST00000538927	ENST00000301464		TCGA	LD	HNSC	TCGA-DQ-5624-01A	ALG10	chr12	34177094	+	IGFBP6	chr12	53495829	+
5CDS-3UTR	ENST00000538927	ENST00000549628		TCGA	LD	HNSC	TCGA-DQ-5624-01A	ALG10	chr12	34177094	+	IGFBP6	chr12	53495829	+
In-frame	ENST00000345044	ENST00000266604		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000345044	ENST00000446587		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
intron-3CDS	ENST00000403208	ENST00000266604		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
intron-3CDS	ENST00000403208	ENST00000446587		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000398356	ENST00000266604		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000398356	ENST00000446587		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000405847	ENST00000266604		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000405847	ENST00000446587		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
3UTR-3CDS	ENST00000467660	ENST00000266604		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
3UTR-3CDS	ENST00000467660	ENST00000446587		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000316185	ENST00000266604		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
In-frame	ENST00000316185	ENST00000446587		TCGA	LD	HNSC	TCGA-DQ-5624-01A	SLC2A11	chr22	24217428	+	LLPH	chr12	66517798	-
5CDS-5UTR	ENST00000421905	ENST00000262894		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
5CDS-5UTR	ENST00000421905	ENST00000592780		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
5CDS-5UTR	ENST00000421905	ENST00000590612		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
5CDS-5UTR	ENST00000221462	ENST00000262894		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
5CDS-5UTR	ENST00000221462	ENST00000592780		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
5CDS-5UTR	ENST00000221462	ENST00000590612		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
3UTR-5UTR	ENST00000496125	ENST00000262894		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
3UTR-5UTR	ENST00000496125	ENST00000592780		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
3UTR-5UTR	ENST00000496125	ENST00000590612		TCGA	LD	HNSC	TCGA-DQ-5629-01A	PPP1R37	chr19	45596785	+	ZNF225	chr19	44619913	+
intron-3CDS	ENST00000373458	ENST00000373433		TCGA	LD	HNSC	TCGA-DQ-5631-01A	VSTM2L	chr20	36561991	+	RPRD1B	chr20	36718128	+
intron-3UTR	ENST00000373458	ENST00000471511		TCGA	LD	HNSC	TCGA-DQ-5631-01A	VSTM2L	chr20	36561991	+	RPRD1B	chr20	36718128	+
Frame-shit	ENST00000373461	ENST00000373433		TCGA	LD	HNSC	TCGA-DQ-5631-01A	VSTM2L	chr20	36561991	+	RPRD1B	chr20	36718128	+
5CDS-3UTR	ENST00000373461	ENST00000471511		TCGA	LD	HNSC	TCGA-DQ-5631-01A	VSTM2L	chr20	36561991	+	RPRD1B	chr20	36718128	+
intron-3CDS	ENST00000373459	ENST00000373433		TCGA	LD	HNSC	TCGA-DQ-5631-01A	VSTM2L	chr20	36561991	+	RPRD1B	chr20	36718128	+
intron-3UTR	ENST00000373459	ENST00000471511		TCGA	LD	HNSC	TCGA-DQ-5631-01A	VSTM2L	chr20	36561991	+	RPRD1B	chr20	36718128	+
5UTR-intron	ENST00000244769	ENST00000339302		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000244769	ENST00000430298		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000244769	ENST00000397755		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000244769	ENST00000596883		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000244769	ENST00000397759		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000436367	ENST00000339302		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000436367	ENST00000430298		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000436367	ENST00000397755		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000436367	ENST00000596883		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
5UTR-intron	ENST00000436367	ENST00000397759		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
intron-intron	ENST00000467008	ENST00000339302		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
intron-intron	ENST00000467008	ENST00000430298		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
intron-intron	ENST00000467008	ENST00000397755		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
intron-intron	ENST00000467008	ENST00000596883		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
intron-intron	ENST00000467008	ENST00000397759		TCGA	LD	HNSC	TCGA-DQ-7589-01A	ATXN1	chr6	16522858	-	ZNF788	chr19	12246590	+
In-frame	ENST00000589222	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000589222	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000589222	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000589222	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000589222	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000589222	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000407086	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000407086	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000407086	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000407086	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000407086	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000407086	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000390652	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000390652	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000390652	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000390652	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000390652	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000390652	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000408905	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000408905	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000408905	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000408905	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000408905	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000408905	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000588462	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588462	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588462	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588462	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588462	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588462	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000585744	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000585744	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000585744	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000585744	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000585744	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000585744	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000588874	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588874	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588874	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588874	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588874	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
5CDS-intron	ENST00000588874	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
intron-3CDS	ENST00000585812	ENST00000582809		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
intron-intron	ENST00000585812	ENST00000577616		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
intron-intron	ENST00000585812	ENST00000326270		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
intron-intron	ENST00000585812	ENST00000346027		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
intron-intron	ENST00000585812	ENST00000343388		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
intron-intron	ENST00000585812	ENST00000542523		TCGA	LD	HNSC	TCGA-DQ-7589-01A	BCAS3	chr17	59155890	+	TLK2	chr17	60673946	+
In-frame	ENST00000227507	ENST00000168712		TCGA	LD	HNSC	TCGA-DQ-7589-01A	CCND1	chr11	69458759	+	FGF4	chr11	69588895	-
5CDS-intron	ENST00000227507	ENST00000538040		TCGA	LD	HNSC	TCGA-DQ-7589-01A	CCND1	chr11	69458759	+	FGF4	chr11	69588895	-
intron-3CDS	ENST00000536559	ENST00000168712		TCGA	LD	HNSC	TCGA-DQ-7589-01A	CCND1	chr11	69458759	+	FGF4	chr11	69588895	-
intron-intron	ENST00000536559	ENST00000538040		TCGA	LD	HNSC	TCGA-DQ-7589-01A	CCND1	chr11	69458759	+	FGF4	chr11	69588895	-
5CDS-5UTR	ENST00000540306	ENST00000398472		TCGA	LD	HNSC	TCGA-DQ-7589-01A	DHX8	chr17	41561553	+	KRTAP4-1	chr17	39341573	-
5CDS-5UTR	ENST00000262415	ENST00000398472		TCGA	LD	HNSC	TCGA-DQ-7589-01A	DHX8	chr17	41561553	+	KRTAP4-1	chr17	39341573	-
Frame-shit	ENST00000394126	ENST00000580825		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394126	ENST00000254079		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394126	ENST00000579000		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394126	ENST00000394265		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394126	ENST00000394267		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000356271	ENST00000580825		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000356271	ENST00000254079		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000356271	ENST00000579000		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000356271	ENST00000394265		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000356271	ENST00000394267		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394128	ENST00000580825		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394128	ENST00000254079		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394128	ENST00000579000		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394128	ENST00000394265		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000394128	ENST00000394267		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
In-frame	ENST00000394127	ENST00000580825		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
In-frame	ENST00000394127	ENST00000254079		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
In-frame	ENST00000394127	ENST00000579000		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
In-frame	ENST00000394127	ENST00000394265		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
In-frame	ENST00000394127	ENST00000394267		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000501516	ENST00000580825		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000501516	ENST00000254079		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000501516	ENST00000579000		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000501516	ENST00000394265		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000501516	ENST00000394267		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000479829	ENST00000580825		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000479829	ENST00000254079		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000479829	ENST00000579000		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000479829	ENST00000394265		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000479829	ENST00000394267		TCGA	LD	HNSC	TCGA-DQ-7589-01A	MED24	chr17	38182409	-	PPP1R1B	chr17	37791860	+
In-frame	ENST00000255977	ENST00000288602		TCGA	LD	HNSC	TCGA-DQ-7590-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000437223	ENST00000288602		TCGA	LD	HNSC	TCGA-DQ-7590-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140481493	-
In-frame	ENST00000474576	ENST00000288602		TCGA	LD	HNSC	TCGA-DQ-7590-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000480552	ENST00000288602		TCGA	LD	HNSC	TCGA-DQ-7590-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140481493	-
In-frame	ENST00000443720	ENST00000288602		TCGA	LD	HNSC	TCGA-DQ-7590-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000481705	ENST00000288602		TCGA	LD	HNSC	TCGA-DQ-7590-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140481493	-
Frame-shit	ENST00000262460	ENST00000376309		TCGA	LD	HNSC	TCGA-DQ-7591-01A	GINS1	chr20	25388531	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000429262	ENST00000376309		TCGA	LD	HNSC	TCGA-DQ-7591-01A	GINS1	chr20	25388531	+	DEFB123	chr20	30037832	+
3UTR-3CDS	ENST00000484893	ENST00000376309		TCGA	LD	HNSC	TCGA-DQ-7591-01A	GINS1	chr20	25388531	+	DEFB123	chr20	30037832	+
5CDS-3UTR	ENST00000367302	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367302	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367302	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367302	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367302	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367302	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367302	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367296	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367296	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367296	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367296	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367296	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367296	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367296	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000295624	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000295624	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000295624	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000295624	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000295624	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000295624	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000295624	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367297	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367297	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367297	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367297	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367297	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367297	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367297	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367300	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367300	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-3UTR	ENST00000367300	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367300	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367300	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367300	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
5CDS-intron	ENST00000367300	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-3UTR	ENST00000367295	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-3UTR	ENST00000367295	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-3UTR	ENST00000367295	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000367295	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000367295	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000367295	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000367295	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-3UTR	ENST00000469130	ENST00000569256		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-3UTR	ENST00000469130	ENST00000248098		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-3UTR	ENST00000469130	ENST00000562684		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000469130	ENST00000561516		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000469130	ENST00000382711		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000469130	ENST00000569765		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
intron-intron	ENST00000469130	ENST00000382710		TCGA	LD	HNSC	TCGA-DQ-7591-01A	NAV1	chr1	201618553	+	HN1L	chr16	1741844	+
In-frame	ENST00000546111	ENST00000266560		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5CDS-intron	ENST00000546111	ENST00000542370		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
Frame-shit	ENST00000535923	ENST00000266560		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5CDS-intron	ENST00000535923	ENST00000542370		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
Frame-shit	ENST00000542912	ENST00000266560		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5CDS-intron	ENST00000542912	ENST00000542370		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
Frame-shit	ENST00000440277	ENST00000266560		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5CDS-intron	ENST00000440277	ENST00000542370		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
Frame-shit	ENST00000399433	ENST00000266560		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5CDS-intron	ENST00000399433	ENST00000542370		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5UTR-3CDS	ENST00000544134	ENST00000266560		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
5UTR-intron	ENST00000544134	ENST00000542370		TCGA	LD	HNSC	TCGA-DQ-7591-01A	PHB2	chr12	7079359	-	RBP5	chr12	7277326	-
intron-5UTR	ENST00000539805	ENST00000538132		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000539805	ENST00000217426		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000539805	ENST00000468908		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
5UTR-5UTR	ENST00000480436	ENST00000538132		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
5UTR-5UTR	ENST00000480436	ENST00000217426		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
5UTR-5UTR	ENST00000480436	ENST00000468908		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000337743	ENST00000538132		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000337743	ENST00000217426		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000337743	ENST00000468908		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000544472	ENST00000538132		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000544472	ENST00000217426		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000544472	ENST00000468908		TCGA	LD	HNSC	TCGA-DQ-7591-01A	TASP1	chr20	13509093	-	AHCY	chr20	32883391	-
Frame-shit	ENST00000263035	ENST00000281141		TCGA	LD	HNSC	TCGA-DQ-7592-01A	DHTKD1	chr10	12111186	+	CDC123	chr10	12272947	+
5CDS-3UTR	ENST00000263035	ENST00000455773		TCGA	LD	HNSC	TCGA-DQ-7592-01A	DHTKD1	chr10	12111186	+	CDC123	chr10	12272947	+
5CDS-3UTR	ENST00000263035	ENST00000378900		TCGA	LD	HNSC	TCGA-DQ-7592-01A	DHTKD1	chr10	12111186	+	CDC123	chr10	12272947	+
intron-3CDS	ENST00000465617	ENST00000281141		TCGA	LD	HNSC	TCGA-DQ-7592-01A	DHTKD1	chr10	12111186	+	CDC123	chr10	12272947	+
intron-3UTR	ENST00000465617	ENST00000455773		TCGA	LD	HNSC	TCGA-DQ-7592-01A	DHTKD1	chr10	12111186	+	CDC123	chr10	12272947	+
intron-3UTR	ENST00000465617	ENST00000378900		TCGA	LD	HNSC	TCGA-DQ-7592-01A	DHTKD1	chr10	12111186	+	CDC123	chr10	12272947	+
5UTR-3CDS	ENST00000299293	ENST00000308330		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
5UTR-3UTR	ENST00000299293	ENST00000541171		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
5UTR-3CDS	ENST00000549921	ENST00000308330		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
5UTR-3UTR	ENST00000549921	ENST00000541171		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
5UTR-3CDS	ENST00000550389	ENST00000308330		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
5UTR-3UTR	ENST00000550389	ENST00000541171		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
intron-3CDS	ENST00000397997	ENST00000308330		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
intron-3UTR	ENST00000397997	ENST00000541171		TCGA	LD	HNSC	TCGA-DQ-7592-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65604706	+
In-frame	ENST00000249373	ENST00000249344		TCGA	LD	HNSC	TCGA-DQ-7592-01A	SMO	chr7	128849238	+	STRIP2	chr7	129104453	+
In-frame	ENST00000249373	ENST00000435494		TCGA	LD	HNSC	TCGA-DQ-7592-01A	SMO	chr7	128849238	+	STRIP2	chr7	129104453	+
In-frame	ENST00000264167	ENST00000233892		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
5CDS-5UTR	ENST00000264167	ENST00000409916		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
5CDS-5UTR	ENST00000264167	ENST00000323303		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
5CDS-5UTR	ENST00000264167	ENST00000448447		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
5CDS-3UTR	ENST00000264167	ENST00000497443		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
5CDS-3UTR	ENST00000264167	ENST00000409360		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
intron-3CDS	ENST00000409888	ENST00000233892		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
intron-5UTR	ENST00000409888	ENST00000409916		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
intron-5UTR	ENST00000409888	ENST00000323303		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
intron-5UTR	ENST00000409888	ENST00000448447		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
intron-3UTR	ENST00000409888	ENST00000497443		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
intron-3UTR	ENST00000409888	ENST00000409360		TCGA	LD	HNSC	TCGA-DQ-7594-01A	AGPS	chr2	178378636	+	MOB4	chr2	198404835	+
Frame-shit	ENST00000375258	ENST00000295049		TCGA	LD	HNSC	TCGA-DQ-7594-01A	METTL8	chr2	172248553	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000463392	ENST00000295049		TCGA	LD	HNSC	TCGA-DQ-7594-01A	METTL8	chr2	172248553	-	RFTN2	chr2	198437004	-
5CDS-3UTR	ENST00000346672	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000346672	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000360962	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000360962	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5UTR-3UTR	ENST00000527634	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5UTR-3UTR	ENST00000527634	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000540737	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000540737	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5UTR-3UTR	ENST00000532565	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5UTR-3UTR	ENST00000532565	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000525449	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000525449	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
3UTR-3UTR	ENST00000527368	ENST00000532620		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
3UTR-3UTR	ENST00000527368	ENST00000608857		TCGA	LD	HNSC	TCGA-F7-7848-01A	C11orf80	chr11	66526567	+	TSGA10IP	chr11	65713186	+
5UTR-intron	ENST00000358691	ENST00000494757		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000358691	ENST00000323571		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000358691	ENST00000585043		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000358691	ENST00000394103		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000358691	ENST00000536600		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000358691	ENST00000583130		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-intron	ENST00000580168	ENST00000494757		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580168	ENST00000323571		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580168	ENST00000585043		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580168	ENST00000394103		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580168	ENST00000536600		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580168	ENST00000583130		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-intron	ENST00000580662	ENST00000494757		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580662	ENST00000323571		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580662	ENST00000585043		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580662	ENST00000394103		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580662	ENST00000536600		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
5UTR-5UTR	ENST00000580662	ENST00000583130		TCGA	LD	HNSC	TCGA-F7-8298-01A	HELZ	chr17	65235549	-	WIPF2	chr17	38412643	+
intron-intron	ENST00000526568	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000526568	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000526568	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000526568	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000526568	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000527979	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000527979	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000527979	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000527979	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000527979	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000533400	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000533400	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000533400	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000533400	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-3UTR	ENST00000533400	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000436863	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000436863	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000436863	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000436863	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-3UTR	ENST00000436863	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000393136	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000393136	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000393136	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000393136	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000393136	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000446369	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000446369	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000446369	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000446369	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000446369	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000353247	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000353247	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000353247	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000353247	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000353247	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000594519	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000594519	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000594519	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000594519	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000594519	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000598974	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000598974	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000598974	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000598974	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-3UTR	ENST00000598974	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000415981	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000415981	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000415981	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000415981	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000415981	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000593315	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000593315	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000593315	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000593315	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000593315	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000525825	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000525825	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000525825	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000525825	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000525825	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000534497	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000534497	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000534497	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000534497	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000534497	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000531166	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000531166	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000531166	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-intron	ENST00000531166	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
intron-3UTR	ENST00000531166	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000528974	ENST00000553443		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000528974	ENST00000476979		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000528974	ENST00000267368		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000528974	ENST00000382320		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-3UTR	ENST00000528974	ENST00000554555		TCGA	LD	HNSC	TCGA-F7-8489-01A	CASP1	chr11	104903791	-	TTC6	chr14	38271299	+
5CDS-intron	ENST00000268489	ENST00000537792		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000268489	ENST00000537465		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000268489	ENST00000237353		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000268489	ENST00000355636		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000268489	ENST00000543746		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000397992	ENST00000537792		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000397992	ENST00000537465		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000397992	ENST00000237353		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000397992	ENST00000355636		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-intron	ENST00000397992	ENST00000543746		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000537792		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000537465		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000237353		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000355636		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000543746		TCGA	LD	HNSC	TCGA-F7-8489-01A	ZFHX3	chr16	72923630	-	PMFBP1	chr16	72153988	-
5CDS-5UTR	ENST00000540691	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000540691	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000539106	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000539106	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000222307	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000222307	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
intron-5UTR	ENST00000600796	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
intron-intron	ENST00000600796	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000601630	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000601630	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000599000	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000599000	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000595073	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000595073	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000599319	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000599319	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000602094	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000602094	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-5UTR	ENST00000598830	ENST00000594325		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000598830	ENST00000392386		TCGA	LD	HNSC	TCGA-F7-A61V-01A	KXD1	chr19	18675831	+	CRLF1	chr19	18683817	-
5CDS-intron	ENST00000372070	ENST00000324350		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000372070	ENST00000373191		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000372070	ENST00000397828		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000372070	ENST00000246314		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000372070	ENST00000471099		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351829	ENST00000324350		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351829	ENST00000373191		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351829	ENST00000397828		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000351829	ENST00000246314		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351829	ENST00000471099		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000471651	ENST00000324350		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000471651	ENST00000373191		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000471651	ENST00000397828		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000471651	ENST00000246314		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000471651	ENST00000471099		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
intron-intron	ENST00000473038	ENST00000324350		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
intron-intron	ENST00000473038	ENST00000373191		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
intron-intron	ENST00000473038	ENST00000397828		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
intron-5UTR	ENST00000473038	ENST00000246314		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
intron-intron	ENST00000473038	ENST00000471099		TCGA	LD	HNSC	TCGA-F7-A61W-01A	AKR1A1	chr1	46027550	+	AGO3	chr1	36469942	+
Frame-shit	ENST00000334047	ENST00000346672		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000360962		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000527634		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000540737		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000532565		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000334047	ENST00000525449		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000334047	ENST00000527368		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000346672		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000360962		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000527634		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000540737		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000532565		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
Frame-shit	ENST00000370207	ENST00000525449		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000370207	ENST00000527368		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000346672		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000360962		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000527634		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000540737		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000532565		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-3CDS	ENST00000480356	ENST00000525449		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5UTR-intron	ENST00000480356	ENST00000527368		TCGA	LD	HNSC	TCGA-F7-A620-01A	F3	chr1	95007093	-	C11orf80	chr11	66583524	+
5CDS-intron	ENST00000361523	ENST00000434000		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000361523	ENST00000591680		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-5UTR	ENST00000361523	ENST00000586265		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000361523	ENST00000592154		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000361523	ENST00000588554		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000590099	ENST00000434000		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000590099	ENST00000591680		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-5UTR	ENST00000590099	ENST00000586265		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000590099	ENST00000592154		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000590099	ENST00000588554		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000438274	ENST00000434000		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000438274	ENST00000591680		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-5UTR	ENST00000438274	ENST00000586265		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000438274	ENST00000592154		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5CDS-intron	ENST00000438274	ENST00000588554		TCGA	LD	HNSC	TCGA-F7-A623-01A	BECN1	chr17	40965966	-	GPATCH8	chr17	42516083	-
5UTR-3CDS	ENST00000327671	ENST00000256257		TCGA	LD	HNSC	TCGA-F7-A623-01A	FUT10	chr8	33330582	-	RNF122	chr8	33416289	-
intron-3CDS	ENST00000518672	ENST00000256257		TCGA	LD	HNSC	TCGA-F7-A623-01A	FUT10	chr8	33330582	-	RNF122	chr8	33416289	-
5UTR-3CDS	ENST00000524021	ENST00000256257		TCGA	LD	HNSC	TCGA-F7-A623-01A	FUT10	chr8	33330582	-	RNF122	chr8	33416289	-
5UTR-3CDS	ENST00000335589	ENST00000256257		TCGA	LD	HNSC	TCGA-F7-A623-01A	FUT10	chr8	33330582	-	RNF122	chr8	33416289	-
intron-3CDS	ENST00000518076	ENST00000256257		TCGA	LD	HNSC	TCGA-F7-A623-01A	FUT10	chr8	33330582	-	RNF122	chr8	33416289	-
In-frame	ENST00000524189	ENST00000555449		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000524189	ENST00000331299		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000524189	ENST00000557611		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000521515	ENST00000555449		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000521515	ENST00000331299		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000521515	ENST00000557611		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
5UTR-3CDS	ENST00000404075	ENST00000555449		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
5UTR-3CDS	ENST00000404075	ENST00000331299		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
5UTR-5UTR	ENST00000404075	ENST00000557611		TCGA	LD	HNSC	TCGA-F7-A623-01A	KIF13B	chr8	28956650	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000260970	ENST00000260956		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000260970	ENST00000409333		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000409714	ENST00000260956		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000409714	ENST00000409333		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000462903	ENST00000260956		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000462903	ENST00000409333		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000448752	ENST00000260956		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
Frame-shit	ENST00000448752	ENST00000409333		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
intron-3CDS	ENST00000482772	ENST00000260956		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
intron-3CDS	ENST00000482772	ENST00000409333		TCGA	LD	HNSC	TCGA-F7-A623-01A	PPIG	chr2	170471191	+	SSB	chr2	170661984	+
intron-3CDS	ENST00000424789	ENST00000535342		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000424789	ENST00000392769		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000424789	ENST00000541355		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000424789	ENST00000537949		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-intron	ENST00000424789	ENST00000317442		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-intron	ENST00000424789	ENST00000580482		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000389520	ENST00000535342		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000389520	ENST00000392769		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000389520	ENST00000541355		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-3CDS	ENST00000389520	ENST00000537949		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-intron	ENST00000389520	ENST00000317442		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
intron-intron	ENST00000389520	ENST00000580482		TCGA	LD	HNSC	TCGA-F7-A623-01A	TANC2	chr17	61176718	+	CEP112	chr17	63957716	-
In-frame	ENST00000403766	ENST00000376355		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
In-frame	ENST00000403766	ENST00000444838		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
In-frame	ENST00000403766	ENST00000376360		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
In-frame	ENST00000403766	ENST00000376354		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
In-frame	ENST00000403766	ENST00000339105		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000376440	ENST00000376355		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000376440	ENST00000444838		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000376440	ENST00000376360		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000376440	ENST00000376354		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000376440	ENST00000339105		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000460562	ENST00000376355		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000460562	ENST00000444838		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000460562	ENST00000376360		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000460562	ENST00000376354		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000460562	ENST00000339105		TCGA	LD	HNSC	TCGA-H7-A6C4-01A	UBAC2	chr13	99896878	+	CLYBL	chr13	100425078	+
3UTR-3CDS	ENST00000468573	ENST00000319653		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
3UTR-3CDS	ENST00000468573	ENST00000545751		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
3UTR-3CDS	ENST00000468573	ENST00000543681		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
3UTR-3UTR	ENST00000468573	ENST00000496950		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
5UTR-3CDS	ENST00000255380	ENST00000319653		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
5UTR-3CDS	ENST00000255380	ENST00000545751		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
5UTR-3CDS	ENST00000255380	ENST00000543681		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
5UTR-3UTR	ENST00000255380	ENST00000496950		TCGA	LD	HNSC	TCGA-HD-7229-01A	CHRM3	chr1	239990678	+	FMN2	chr1	240635672	+
In-frame	ENST00000300527	ENST00000216181		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000300527	ENST00000475726		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000300527	ENST00000401701		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
In-frame	ENST00000310645	ENST00000216181		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000310645	ENST00000475726		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000310645	ENST00000401701		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
In-frame	ENST00000357838	ENST00000216181		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000357838	ENST00000475726		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000357838	ENST00000401701		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
In-frame	ENST00000409416	ENST00000216181		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000409416	ENST00000475726		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000409416	ENST00000401701		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
In-frame	ENST00000397763	ENST00000216181		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000397763	ENST00000475726		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000397763	ENST00000401701		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
intron-3CDS	ENST00000460886	ENST00000216181		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
intron-intron	ENST00000460886	ENST00000475726		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
intron-intron	ENST00000460886	ENST00000401701		TCGA	LD	HNSC	TCGA-HD-7831-01A	COL6A2	chr21	47542072	+	MYH9	chr22	36695088	-
5CDS-intron	ENST00000519824	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000522746	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000523509	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000401979	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000519110	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000522250	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000517654	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000519540	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
5CDS-intron	ENST00000522941	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
intron-intron	ENST00000518879	ENST00000446592		TCGA	LD	HNSC	TCGA-HD-7831-01A	FAM49B	chr8	130863081	-	CCDC26	chr8	130411930	-
In-frame	ENST00000398844	ENST00000254908		TCGA	LD	HNSC	TCGA-HD-7832-01A	SEC24A	chr5	134028347	+	PCBD2	chr5	134294730	+
In-frame	ENST00000398844	ENST00000512783		TCGA	LD	HNSC	TCGA-HD-7832-01A	SEC24A	chr5	134028347	+	PCBD2	chr5	134294730	+
5CDS-3UTR	ENST00000398844	ENST00000510013		TCGA	LD	HNSC	TCGA-HD-7832-01A	SEC24A	chr5	134028347	+	PCBD2	chr5	134294730	+
In-frame	ENST00000322887	ENST00000254908		TCGA	LD	HNSC	TCGA-HD-7832-01A	SEC24A	chr5	134028347	+	PCBD2	chr5	134294730	+
In-frame	ENST00000322887	ENST00000512783		TCGA	LD	HNSC	TCGA-HD-7832-01A	SEC24A	chr5	134028347	+	PCBD2	chr5	134294730	+
5CDS-3UTR	ENST00000322887	ENST00000510013		TCGA	LD	HNSC	TCGA-HD-7832-01A	SEC24A	chr5	134028347	+	PCBD2	chr5	134294730	+
Frame-shit	ENST00000170150	ENST00000529681		TCGA	LD	HNSC	TCGA-HD-8314-01A	BPIFB2	chr20	31608393	+	MUC5B	chr11	1281856	+
Frame-shit	ENST00000170150	ENST00000447027		TCGA	LD	HNSC	TCGA-HD-8314-01A	BPIFB2	chr20	31608393	+	MUC5B	chr11	1281856	+
5CDS-intron	ENST00000170150	ENST00000531082		TCGA	LD	HNSC	TCGA-HD-8314-01A	BPIFB2	chr20	31608393	+	MUC5B	chr11	1281856	+
Frame-shit	ENST00000310454	ENST00000339562		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000310454	ENST00000426264		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000310454	ENST00000409572		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000310454	ENST00000539077		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000310454	ENST00000409108		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000310454	ENST00000429376		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5UTR-3CDS	ENST00000409125	ENST00000339562		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5UTR-3CDS	ENST00000409125	ENST00000426264		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5UTR-3CDS	ENST00000409125	ENST00000409572		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5UTR-3CDS	ENST00000409125	ENST00000539077		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5UTR-3CDS	ENST00000409125	ENST00000409108		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5UTR-3CDS	ENST00000409125	ENST00000429376		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000438166	ENST00000339562		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000438166	ENST00000426264		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000438166	ENST00000409572		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000438166	ENST00000539077		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000438166	ENST00000409108		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000438166	ENST00000429376		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000540309	ENST00000339562		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000540309	ENST00000426264		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000540309	ENST00000409572		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000540309	ENST00000539077		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000540309	ENST00000409108		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000540309	ENST00000429376		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000409674	ENST00000339562		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000409674	ENST00000426264		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000409674	ENST00000409572		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000409674	ENST00000539077		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
Frame-shit	ENST00000409674	ENST00000409108		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
In-frame	ENST00000409674	ENST00000429376		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
intron-3CDS	ENST00000496190	ENST00000339562		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
intron-3CDS	ENST00000496190	ENST00000426264		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
intron-3CDS	ENST00000496190	ENST00000409572		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
intron-3CDS	ENST00000496190	ENST00000539077		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
intron-3CDS	ENST00000496190	ENST00000409108		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
intron-3CDS	ENST00000496190	ENST00000429376		TCGA	LD	HNSC	TCGA-HD-A634-01A	GPD2	chr2	157332719	+	NR4A2	chr2	157182512	-
5CDS-intron	ENST00000263238	ENST00000375514		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000263238	ENST00000415876		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000263238	ENST00000535165		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000263238	ENST00000493021		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000263238	ENST00000272716		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000263238	ENST00000446997		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000263238	ENST00000421911		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000375514		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000415876		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000535165		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000493021		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000272716		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000446997		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000536059	ENST00000421911		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000375514		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000415876		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000535165		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000493021		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000272716		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000446997		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
5CDS-intron	ENST00000535589	ENST00000421911		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	ACTR3	chr2	114713283	+	SLC4A10	chr2	162477425	+
Frame-shit	ENST00000356860	ENST00000380050		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356860	ENST00000265741		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356860	ENST00000406263		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356860	ENST00000436577		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
5CDS-intron	ENST00000356860	ENST00000496279		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356253	ENST00000380050		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356253	ENST00000265741		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356253	ENST00000406263		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000356253	ENST00000436577		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
5CDS-intron	ENST00000356253	ENST00000496279		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000423588	ENST00000380050		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000423588	ENST00000265741		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000423588	ENST00000406263		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000423588	ENST00000436577		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-intron	ENST00000423588	ENST00000496279		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000464354	ENST00000380050		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000464354	ENST00000265741		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000464354	ENST00000406263		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000464354	ENST00000436577		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-intron	ENST00000464354	ENST00000496279		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000535308	ENST00000380050		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000535308	ENST00000265741		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000535308	ENST00000406263		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000535308	ENST00000436577		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
intron-intron	ENST00000535308	ENST00000496279		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	CACNA2D1	chr7	81611883	-	CDK14	chr7	90675212	+
5UTR-3CDS	ENST00000367838	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000367838	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000271357	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000271357	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000367836	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000367836	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
In-frame	ENST00000539777	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
In-frame	ENST00000539777	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000537209	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000537209	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000361697	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000361697	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000546300	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000546300	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000367835	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000367835	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000485232	ENST00000367846		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
intron-3CDS	ENST00000485232	ENST00000271373		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	GPR161	chr1	168105495	-	MPC2	chr1	167889869	-
3UTR-3CDS	ENST00000359947	ENST00000424843		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000359947	ENST00000276654		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-intron	ENST00000359947	ENST00000518375		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
intron-3CDS	ENST00000438120	ENST00000424843		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
intron-3CDS	ENST00000438120	ENST00000276654		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
intron-intron	ENST00000438120	ENST00000518375		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000372413	ENST00000424843		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000372413	ENST00000276654		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-intron	ENST00000372413	ENST00000518375		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000372414	ENST00000424843		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000372414	ENST00000276654		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-intron	ENST00000372414	ENST00000518375		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
intron-3CDS	ENST00000422171	ENST00000424843		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
intron-3CDS	ENST00000422171	ENST00000276654		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
intron-intron	ENST00000422171	ENST00000518375		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000496447	ENST00000424843		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-3CDS	ENST00000496447	ENST00000276654		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
3UTR-intron	ENST00000496447	ENST00000518375		TCGA	LD	HNSC	TCGA-HD-A6HZ-01A	PTPRF	chr1	44089074	+	LRP12	chr8	105521302	-
5UTR-intron	ENST00000333677	ENST00000384891		TCGA	LD	HNSC	TCGA-HD-A6I0-01A	ARHGEF37	chr5	148961187	+	MIR205HG	chr1	209602526	+
In-frame	ENST00000268182	ENST00000261854		TCGA	LD	HNSC	TCGA-HL-7533-01A	IQGAP1	chr15	90934105	+	SPPL2A	chr15	51000071	-
5CDS-intron	ENST00000268182	ENST00000559293		TCGA	LD	HNSC	TCGA-HL-7533-01A	IQGAP1	chr15	90934105	+	SPPL2A	chr15	51000071	-
intron-3CDS	ENST00000560738	ENST00000261854		TCGA	LD	HNSC	TCGA-HL-7533-01A	IQGAP1	chr15	90934105	+	SPPL2A	chr15	51000071	-
intron-intron	ENST00000560738	ENST00000559293		TCGA	LD	HNSC	TCGA-HL-7533-01A	IQGAP1	chr15	90934105	+	SPPL2A	chr15	51000071	-
intron-3CDS	ENST00000560020	ENST00000261854		TCGA	LD	HNSC	TCGA-HL-7533-01A	IQGAP1	chr15	90934105	+	SPPL2A	chr15	51000071	-
intron-intron	ENST00000560020	ENST00000559293		TCGA	LD	HNSC	TCGA-HL-7533-01A	IQGAP1	chr15	90934105	+	SPPL2A	chr15	51000071	-
5CDS-5UTR	ENST00000394936	ENST00000394919		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394936	ENST00000342444		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394936	ENST00000317168		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394936	ENST00000545550		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394936	ENST00000317126		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394936	ENST00000394915		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394936	ENST00000492502		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000394919		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000342444		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000317168		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000545550		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000317126		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000394915		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
5CDS-5UTR	ENST00000394934	ENST00000492502		TCGA	LD	HNSC	TCGA-IQ-7630-01A	PSAP	chr10	73610939	-	ASCC1	chr10	73973089	-
In-frame	ENST00000291576	ENST00000291574		TCGA	LD	HNSC	TCGA-IQ-7632-01A	PWP2	chr21	45544608	+	TRAPPC10	chr21	45494205	+
5CDS-intron	ENST00000291576	ENST00000380221		TCGA	LD	HNSC	TCGA-IQ-7632-01A	PWP2	chr21	45544608	+	TRAPPC10	chr21	45494205	+
5CDS-intron	ENST00000291576	ENST00000483973		TCGA	LD	HNSC	TCGA-IQ-7632-01A	PWP2	chr21	45544608	+	TRAPPC10	chr21	45494205	+
intron-3CDS	ENST00000494310	ENST00000291574		TCGA	LD	HNSC	TCGA-IQ-7632-01A	PWP2	chr21	45544608	+	TRAPPC10	chr21	45494205	+
intron-intron	ENST00000494310	ENST00000380221		TCGA	LD	HNSC	TCGA-IQ-7632-01A	PWP2	chr21	45544608	+	TRAPPC10	chr21	45494205	+
intron-intron	ENST00000494310	ENST00000483973		TCGA	LD	HNSC	TCGA-IQ-7632-01A	PWP2	chr21	45544608	+	TRAPPC10	chr21	45494205	+
5UTR-3CDS	ENST00000607062	ENST00000441310		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-3CDS	ENST00000607062	ENST00000418224		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000607062	ENST00000409823		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000607062	ENST00000421722		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000607062	ENST00000447232		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000607062	ENST00000432292		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000607062	ENST00000409985		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000607062	ENST00000374826		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-3CDS	ENST00000260952	ENST00000441310		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-3CDS	ENST00000260952	ENST00000418224		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000260952	ENST00000409823		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000260952	ENST00000421722		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000260952	ENST00000447232		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000260952	ENST00000432292		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000260952	ENST00000409985		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5UTR-intron	ENST00000260952	ENST00000374826		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000607535	ENST00000441310		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000607535	ENST00000418224		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607535	ENST00000409823		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607535	ENST00000421722		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607535	ENST00000447232		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607535	ENST00000432292		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607535	ENST00000409985		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607535	ENST00000374826		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000607690	ENST00000441310		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000607690	ENST00000418224		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607690	ENST00000409823		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607690	ENST00000421722		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607690	ENST00000447232		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607690	ENST00000432292		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607690	ENST00000409985		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607690	ENST00000374826		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000607829	ENST00000441310		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000607829	ENST00000418224		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607829	ENST00000409823		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607829	ENST00000421722		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607829	ENST00000447232		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607829	ENST00000432292		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607829	ENST00000409985		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
5CDS-intron	ENST00000607829	ENST00000374826		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	ASNSD1	chr2	190526336	+	PMS1	chr2	190708690	+
In-frame	ENST00000394773	ENST00000330574		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000278845	ENST00000330574		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
Frame-shit	ENST00000531557	ENST00000330574		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000494176	ENST00000330574		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000529309	ENST00000330574		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000438258	ENST00000330574		TCGA	LD	HNSC	TCGA-IQ-A61G-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
intron-3UTR	ENST00000518857	ENST00000395996		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
intron-3UTR	ENST00000518857	ENST00000358544		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
intron-3UTR	ENST00000518857	ENST00000357162		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
intron-intron	ENST00000518857	ENST00000355155		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
intron-intron	ENST00000518857	ENST00000441350		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
intron-intron	ENST00000518857	ENST00000521932		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-3UTR	ENST00000395862	ENST00000395996		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-3UTR	ENST00000395862	ENST00000358544		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-3UTR	ENST00000395862	ENST00000357162		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-intron	ENST00000395862	ENST00000355155		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-intron	ENST00000395862	ENST00000441350		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-intron	ENST00000395862	ENST00000521932		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-3UTR	ENST00000521514	ENST00000395996		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-3UTR	ENST00000521514	ENST00000358544		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-3UTR	ENST00000521514	ENST00000357162		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-intron	ENST00000521514	ENST00000355155		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-intron	ENST00000521514	ENST00000441350		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-intron	ENST00000521514	ENST00000521932		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-3UTR	ENST00000518738	ENST00000395996		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-3UTR	ENST00000518738	ENST00000358544		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-3UTR	ENST00000518738	ENST00000357162		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-intron	ENST00000518738	ENST00000355155		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-intron	ENST00000518738	ENST00000441350		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5CDS-intron	ENST00000518738	ENST00000521932		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	ATP6V1C1	chr8	104054635	+	VPS13B	chr8	100568678	+
5UTR-intron	ENST00000311172	ENST00000543304		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000311172	ENST00000334805		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000311172	ENST00000538536		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000311172	ENST00000538437		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000311172	ENST00000545082		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409314	ENST00000543304		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409314	ENST00000334805		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409314	ENST00000538536		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409314	ENST00000538437		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409314	ENST00000545082		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409418	ENST00000543304		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409418	ENST00000334805		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409418	ENST00000538536		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409418	ENST00000538437		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5CDS-intron	ENST00000409418	ENST00000545082		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000458644	ENST00000543304		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000458644	ENST00000334805		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000458644	ENST00000538536		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000458644	ENST00000538437		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000458644	ENST00000545082		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000409853	ENST00000543304		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000409853	ENST00000334805		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000409853	ENST00000538536		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000409853	ENST00000538437		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
5UTR-intron	ENST00000409853	ENST00000545082		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
intron-intron	ENST00000409263	ENST00000543304		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
intron-intron	ENST00000409263	ENST00000334805		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
intron-intron	ENST00000409263	ENST00000538536		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
intron-intron	ENST00000409263	ENST00000538437		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
intron-intron	ENST00000409263	ENST00000545082		TCGA	LD	HNSC	TCGA-IQ-A61H-01A	FCHSD2	chr11	72794740	-	STARD10	chr11	72504969	-
3UTR-3CDS	ENST00000509101	ENST00000395792		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	CXCL1	chr4	74735706	+	AFP	chr4	74319482	+
3UTR-3CDS	ENST00000509101	ENST00000226359		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	CXCL1	chr4	74735706	+	AFP	chr4	74319482	+
3UTR-3UTR	ENST00000509101	ENST00000506820		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	CXCL1	chr4	74735706	+	AFP	chr4	74319482	+
In-frame	ENST00000395761	ENST00000395792		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	CXCL1	chr4	74735706	+	AFP	chr4	74319482	+
In-frame	ENST00000395761	ENST00000226359		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	CXCL1	chr4	74735706	+	AFP	chr4	74319482	+
5CDS-3UTR	ENST00000395761	ENST00000506820		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	CXCL1	chr4	74735706	+	AFP	chr4	74319482	+
5CDS-3UTR	ENST00000289081	ENST00000481208		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
5CDS-3UTR	ENST00000289081	ENST00000343744		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
5CDS-3UTR	ENST00000289081	ENST00000371316		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
5CDS-3UTR	ENST00000375305	ENST00000481208		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
5CDS-3UTR	ENST00000375305	ENST00000343744		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
5CDS-3UTR	ENST00000375305	ENST00000371316		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
intron-3UTR	ENST00000464653	ENST00000481208		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
intron-3UTR	ENST00000464653	ENST00000343744		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
intron-3UTR	ENST00000464653	ENST00000371316		TCGA	LD	HNSC	TCGA-IQ-A61I-01A	FANCC	chr9	97897628	-	ACOT11	chr1	55050328	+
Frame-shit	ENST00000357749	ENST00000382148		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000357749	ENST00000447367		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000357749	ENST00000382150		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000357749	ENST00000382152		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000357749	ENST00000509207		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000357749	ENST00000382149		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000357749	ENST00000359001		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000382148		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000447367		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000382150		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000467744	ENST00000382152		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000467744	ENST00000509207		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000467744	ENST00000382149		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000467744	ENST00000359001		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000537751	ENST00000382148		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000537751	ENST00000447367		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000537751	ENST00000382150		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000537751	ENST00000382152		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000537751	ENST00000509207		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000537751	ENST00000382149		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000537751	ENST00000359001		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000382148		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000447367		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000382150		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000358786	ENST00000382152		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000358786	ENST00000509207		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000358786	ENST00000382149		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000358786	ENST00000359001		TCGA	LD	HNSC	TCGA-KU-A66T-01A	CHM	chrX	85128057	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000304698	ENST00000494295		TCGA	LD	HNSC	TCGA-KU-A66T-01A	FAM171B	chr2	187559138	+	ZNF75D	chrX	134385959	-
5CDS-intron	ENST00000304698	ENST00000370766		TCGA	LD	HNSC	TCGA-KU-A66T-01A	FAM171B	chr2	187559138	+	ZNF75D	chrX	134385959	-
5CDS-intron	ENST00000304698	ENST00000370764		TCGA	LD	HNSC	TCGA-KU-A66T-01A	FAM171B	chr2	187559138	+	ZNF75D	chrX	134385959	-
5UTR-3CDS	ENST00000339514	ENST00000361354		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
5UTR-3CDS	ENST00000339514	ENST00000360982		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
5UTR-intron	ENST00000339514	ENST00000478449		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
5UTR-3CDS	ENST00000392318	ENST00000361354		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
5UTR-3CDS	ENST00000392318	ENST00000360982		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
5UTR-intron	ENST00000392318	ENST00000478449		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000304164	ENST00000361354		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000304164	ENST00000360982		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-intron	ENST00000304164	ENST00000478449		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000392316	ENST00000361354		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000392316	ENST00000360982		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-intron	ENST00000392316	ENST00000478449		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000439065	ENST00000361354		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000439065	ENST00000360982		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-intron	ENST00000439065	ENST00000478449		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000496992	ENST00000361354		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-3CDS	ENST00000496992	ENST00000360982		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
intron-intron	ENST00000496992	ENST00000478449		TCGA	LD	HNSC	TCGA-KU-A66T-01A	MYO1B	chr2	192110352	+	NCKAP1	chr2	183829536	-
Frame-shit	ENST00000532636	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
intron-3CDS	ENST00000533540	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
In-frame	ENST00000453788	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
In-frame	ENST00000534624	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
Frame-shit	ENST00000227378	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
intron-3CDS	ENST00000534319	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
Frame-shit	ENST00000526110	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
intron-3CDS	ENST00000526862	ENST00000409977		TCGA	LD	HNSC	TCGA-KU-A6H7-01A	HSPA8	chr11	122931301	-	VSTM5	chr11	93554489	-
5CDS-intron	ENST00000308511	ENST00000518852		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000308511	ENST00000240139		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000308511	ENST00000289963		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000308511	ENST00000397775		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
intron-intron	ENST00000521301	ENST00000518852		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
intron-intron	ENST00000521301	ENST00000240139		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
intron-intron	ENST00000521301	ENST00000289963		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
intron-intron	ENST00000521301	ENST00000397775		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000389279	ENST00000518852		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000389279	ENST00000240139		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000389279	ENST00000289963		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5CDS-intron	ENST00000389279	ENST00000397775		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5UTR-intron	ENST00000520861	ENST00000518852		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5UTR-intron	ENST00000520861	ENST00000240139		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5UTR-intron	ENST00000520861	ENST00000289963		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5UTR-intron	ENST00000520861	ENST00000397775		TCGA	LD	HNSC	TCGA-MT-A67A-01A	CCAR2	chr8	22465578	+	PPP3CC	chr8	22398128	+
5UTR-3CDS	ENST00000344924	ENST00000457545		TCGA	LD	HNSC	TCGA-MT-A7BN-01A	BPGM	chr7	134331689	+	AKR1B15	chr7	134252910	+
5UTR-3CDS	ENST00000344924	ENST00000423958		TCGA	LD	HNSC	TCGA-MT-A7BN-01A	BPGM	chr7	134331689	+	AKR1B15	chr7	134252910	+
5UTR-3CDS	ENST00000418040	ENST00000457545		TCGA	LD	HNSC	TCGA-MT-A7BN-01A	BPGM	chr7	134331689	+	AKR1B15	chr7	134252910	+
5UTR-3CDS	ENST00000418040	ENST00000423958		TCGA	LD	HNSC	TCGA-MT-A7BN-01A	BPGM	chr7	134331689	+	AKR1B15	chr7	134252910	+
5UTR-3CDS	ENST00000393132	ENST00000457545		TCGA	LD	HNSC	TCGA-MT-A7BN-01A	BPGM	chr7	134331689	+	AKR1B15	chr7	134252910	+
5UTR-3CDS	ENST00000393132	ENST00000423958		TCGA	LD	HNSC	TCGA-MT-A7BN-01A	BPGM	chr7	134331689	+	AKR1B15	chr7	134252910	+
In-frame	ENST00000056233	ENST00000304842		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	NFE2L3	chr7	26223404	+	TPST1	chr7	65817492	+
5CDS-3UTR	ENST00000056233	ENST00000480281		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	NFE2L3	chr7	26223404	+	TPST1	chr7	65817492	+
In-frame	ENST00000322652	ENST00000543378		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000322652	ENST00000327564		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000322652	ENST00000394713		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000322652	ENST00000584368		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000322652	ENST00000341671		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
5CDS-intron	ENST00000322652	ENST00000581786		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000580398	ENST00000543378		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000580398	ENST00000327564		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000580398	ENST00000394713		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000580398	ENST00000584368		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
In-frame	ENST00000580398	ENST00000341671		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
5CDS-intron	ENST00000580398	ENST00000581786		TCGA	LD	HNSC	TCGA-MZ-A5BI-01A	SUZ12	chr17	30315516	+	LRRC37B	chr17	30380285	+
intron-3CDS	ENST00000529261	ENST00000443572		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000529261	ENST00000406116		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000529261	ENST00000225577		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-5UTR	ENST00000529261	ENST00000393021		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-intron	ENST00000529261	ENST00000587061		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000278353	ENST00000443572		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000278353	ENST00000406116		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000278353	ENST00000225577		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000278353	ENST00000393021		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000278353	ENST00000587061		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000395700	ENST00000443572		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000395700	ENST00000406116		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000395700	ENST00000225577		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-5UTR	ENST00000395700	ENST00000393021		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
intron-intron	ENST00000395700	ENST00000587061		TCGA	LD	HNSC	TCGA-MZ-A6I9-01A	HSD17B12	chr11	43861614	+	RPS6KB1	chr17	57987923	+
In-frame	ENST00000341776	ENST00000397022		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000353147		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000352392		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000349999		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000317896		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000357618		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000470149		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000336625		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000488199		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000461397		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000341776	ENST00000309234		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-3CDS	ENST00000397311	ENST00000397022		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000353147		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000352392		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000349999		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000317896		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000357618		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000470149		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000336625		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000488199		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000461397		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5UTR-intron	ENST00000397311	ENST00000309234		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
In-frame	ENST00000541660	ENST00000397022		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000353147		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000352392		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000349999		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000317896		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000357618		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000470149		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000336625		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000488199		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000461397		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
5CDS-intron	ENST00000541660	ENST00000309234		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-3CDS	ENST00000474854	ENST00000397022		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000353147		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000352392		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000349999		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000317896		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000357618		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000470149		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000336625		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000488199		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000461397		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
intron-intron	ENST00000474854	ENST00000309234		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	JARID2	chr6	15452406	+	HFE	chr6	26091542	+
Frame-shit	ENST00000356136	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000356136	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000356136	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000356136	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000356136	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000356136	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
5CDS-3UTR	ENST00000356136	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000528420	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000528420	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000528420	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000528420	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000528420	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
Frame-shit	ENST00000528420	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
5CDS-3UTR	ENST00000528420	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000533454	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000533454	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000533454	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000533454	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000533454	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000533454	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3UTR	ENST00000533454	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000531818	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000531818	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000531818	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000531818	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000531818	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000531818	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3UTR	ENST00000531818	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000532130	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000532130	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000532130	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000532130	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000532130	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000532130	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3UTR	ENST00000532130	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000539288	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000539288	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000539288	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000539288	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000539288	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000539288	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3UTR	ENST00000539288	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3CDS	ENST00000525872	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3CDS	ENST00000525872	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3CDS	ENST00000525872	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3CDS	ENST00000525872	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3CDS	ENST00000525872	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3CDS	ENST00000525872	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
3UTR-3UTR	ENST00000525872	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000538870	ENST00000531863		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000538870	ENST00000532677		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000538870	ENST00000453114		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000538870	ENST00000360510		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000538870	ENST00000541961		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3CDS	ENST00000538870	ENST00000530165		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
intron-3UTR	ENST00000538870	ENST00000533799		TCGA	LD	HNSC	TCGA-MZ-A7D7-01A	UVRAG	chr11	75623083	+	DPP3	chr11	66260187	+
5CDS-5UTR	ENST00000395487	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000395487	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-5UTR	ENST00000429094	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000429094	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-5UTR	ENST00000551601	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000551601	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-5UTR	ENST00000452445	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000452445	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-5UTR	ENST00000549027	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000549027	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-5UTR	ENST00000333837	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000333837	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-5UTR	ENST00000437801	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
5CDS-intron	ENST00000437801	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
intron-5UTR	ENST00000547172	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
intron-intron	ENST00000547172	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
intron-5UTR	ENST00000548826	ENST00000454784		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
intron-intron	ENST00000548826	ENST00000474954		TCGA	LD	HNSC	TCGA-P3-A5Q6-01A	NELL2	chr12	45000952	-	MUC19	chr12	40791681	+
3UTR-3CDS	ENST00000508198	ENST00000536101		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
3UTR-3CDS	ENST00000508198	ENST00000335473		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
3UTR-3CDS	ENST00000508198	ENST00000407587		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
3UTR-intron	ENST00000508198	ENST00000536204		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
5UTR-3CDS	ENST00000435205	ENST00000536101		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
5UTR-3CDS	ENST00000435205	ENST00000335473		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
5UTR-3CDS	ENST00000435205	ENST00000407587		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
5UTR-intron	ENST00000435205	ENST00000536204		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
intron-3CDS	ENST00000505231	ENST00000536101		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
intron-3CDS	ENST00000505231	ENST00000335473		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
intron-3CDS	ENST00000505231	ENST00000407587		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
intron-intron	ENST00000505231	ENST00000536204		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	FAM160A1	chr4	152403800	+	MYO18B	chr22	26264287	+
intron-3CDS	ENST00000216181	ENST00000405409		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000414461		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000449924		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000262829		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000397303		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000359369		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000416721		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000216181	ENST00000438146		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000405409		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000414461		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000449924		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000262829		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000397303		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000359369		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000416721		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000475726	ENST00000438146		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000405409		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000414461		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000449924		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000262829		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000397303		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000359369		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000416721		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
intron-3CDS	ENST00000401701	ENST00000438146		TCGA	LD	HNSC	TCGA-P3-A5QA-01A	MYH9	chr22	36678759	-	RBFOX2	chr22	36142608	-
5UTR-3CDS	ENST00000355834	ENST00000390238		TCGA	LD	HNSC	TCGA-P3-A6SW-01A	ZBTB49	chr4	4292080	+	IGKJ5	chr2	89160115	-
5UTR-3CDS	ENST00000538529	ENST00000390238		TCGA	LD	HNSC	TCGA-P3-A6SW-01A	ZBTB49	chr4	4292080	+	IGKJ5	chr2	89160115	-
5UTR-3CDS	ENST00000337872	ENST00000390238		TCGA	LD	HNSC	TCGA-P3-A6SW-01A	ZBTB49	chr4	4292080	+	IGKJ5	chr2	89160115	-
Frame-shit	ENST00000344700	ENST00000374316		TCGA	LD	HNSC	TCGA-P3-A6SX-01A	RPS10	chr6	34392446	-	ITPR3	chr6	33623543	+
Frame-shit	ENST00000344700	ENST00000605930		TCGA	LD	HNSC	TCGA-P3-A6SX-01A	RPS10	chr6	34392446	-	ITPR3	chr6	33623543	+
5UTR-3CDS	ENST00000494077	ENST00000374316		TCGA	LD	HNSC	TCGA-P3-A6SX-01A	RPS10	chr6	34392446	-	ITPR3	chr6	33623543	+
5UTR-3CDS	ENST00000494077	ENST00000605930		TCGA	LD	HNSC	TCGA-P3-A6SX-01A	RPS10	chr6	34392446	-	ITPR3	chr6	33623543	+
In-frame	ENST00000326199	ENST00000374316		TCGA	LD	HNSC	TCGA-P3-A6SX-01A	RPS10	chr6	34392446	-	ITPR3	chr6	33623543	+
In-frame	ENST00000326199	ENST00000605930		TCGA	LD	HNSC	TCGA-P3-A6SX-01A	RPS10	chr6	34392446	-	ITPR3	chr6	33623543	+
In-frame	ENST00000458578	ENST00000317361		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000458578	ENST00000399767		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000458578	ENST00000399774		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000458578	ENST00000399765		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000458578	ENST00000342111		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000458578	ENST00000551952		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000458578	ENST00000473439		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
In-frame	ENST00000342192	ENST00000317361		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000342192	ENST00000399767		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000342192	ENST00000399774		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000342192	ENST00000399765		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000342192	ENST00000342111		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000342192	ENST00000551952		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000342192	ENST00000473439		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
In-frame	ENST00000545681	ENST00000317361		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000545681	ENST00000399767		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000545681	ENST00000399774		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000545681	ENST00000399765		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000545681	ENST00000342111		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000545681	ENST00000551952		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000545681	ENST00000473439		TCGA	LD	HNSC	TCGA-P3-A6T0-01A	UBE2L3	chr22	21965332	+	BID	chr22	18222254	-
3UTR-3UTR	ENST00000532456	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
3UTR-3UTR	ENST00000532456	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
3UTR-intron	ENST00000532456	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
3UTR-intron	ENST00000532456	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
3UTR-intron	ENST00000532456	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5UTR-3UTR	ENST00000539648	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5UTR-3UTR	ENST00000539648	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5UTR-intron	ENST00000539648	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5UTR-intron	ENST00000539648	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5UTR-intron	ENST00000539648	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000528499	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000528499	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000528499	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000528499	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000528499	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000263574	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000263574	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000263574	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000263574	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000263574	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000345598	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000345598	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000345598	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000345598	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000345598	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000338167	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-3UTR	ENST00000338167	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000338167	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000338167	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000338167	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-3UTR	ENST00000278756	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-3UTR	ENST00000278756	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000278756	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000278756	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000278756	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-3UTR	ENST00000543137	ENST00000525620		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-3UTR	ENST00000543137	ENST00000535888		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000543137	ENST00000544661		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000543137	ENST00000332793		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
intron-intron	ENST00000543137	ENST00000526800		TCGA	LD	HNSC	TCGA-P3-A6T5-01A	APLP2	chr11	129939977	+	SLC22A10	chr11	63129852	+
5CDS-intron	ENST00000182096	ENST00000547405		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000452455		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000360610		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000441232		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000392934		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000547509		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000361685		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000182096	ENST00000550501		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000182096	ENST00000549145		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000182096	ENST00000553190		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000182096	ENST00000536007		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000541119		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000545503		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000182096	ENST00000361466		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000182096	ENST00000551300		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000182096	ENST00000550270		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000547405		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000452455		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000360610		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000441232		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000392934		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000547509		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000361685		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000485253	ENST00000550501		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000485253	ENST00000549145		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000485253	ENST00000553190		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000485253	ENST00000536007		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000541119		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000545503		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000485253	ENST00000361466		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000485253	ENST00000551300		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000485253	ENST00000550270		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000547405		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000452455		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000360610		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000441232		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000392934		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000547509		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000361685		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000419587	ENST00000550501		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000419587	ENST00000549145		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000419587	ENST00000553190		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000419587	ENST00000536007		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000541119		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000545503		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000419587	ENST00000361466		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000419587	ENST00000551300		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000419587	ENST00000550270		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000547405		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000452455		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000360610		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000441232		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000392934		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000547509		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000361685		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000389622	ENST00000550501		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000389622	ENST00000549145		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000389622	ENST00000553190		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000389622	ENST00000536007		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000541119		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000545503		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000389622	ENST00000361466		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000389622	ENST00000551300		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000389622	ENST00000550270		TCGA	LD	HNSC	TCGA-P3-A6T7-01A	CRYBG3	chr3	97619329	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000373206	ENST00000566100		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	AGO1	chr1	36367938	+	SLC25A3P1	chr1	53881196	-
5CDS-intron	ENST00000373204	ENST00000566100		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	AGO1	chr1	36367938	+	SLC25A3P1	chr1	53881196	-
3UTR-intron	ENST00000472200	ENST00000484501		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
3UTR-intron	ENST00000472200	ENST00000329582		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
3UTR-5UTR	ENST00000472200	ENST00000309741		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-intron	ENST00000446465	ENST00000484501		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-intron	ENST00000446465	ENST00000329582		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-5UTR	ENST00000446465	ENST00000309741		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-intron	ENST00000393079	ENST00000484501		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-intron	ENST00000393079	ENST00000329582		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-5UTR	ENST00000393079	ENST00000309741		TCGA	LD	HNSC	TCGA-P3-A6T8-01A	SLC35G2	chr3	136538056	+	IL20RB	chr3	136699308	+
5UTR-3CDS	ENST00000450466	ENST00000339486		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
5UTR-3CDS	ENST00000450466	ENST00000581585		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
5UTR-3CDS	ENST00000450466	ENST00000577501		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000383233	ENST00000339486		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000383233	ENST00000581585		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000383233	ENST00000577501		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000542162	ENST00000339486		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000542162	ENST00000581585		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000542162	ENST00000577501		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000399707	ENST00000339486		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000399707	ENST00000581585		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000399707	ENST00000577501		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
intron-3CDS	ENST00000475185	ENST00000339486		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
intron-3CDS	ENST00000475185	ENST00000581585		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
intron-3CDS	ENST00000475185	ENST00000577501		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	TMEM241	chr18	20964954	-	RIOK3	chr18	21046097	+
In-frame	ENST00000305135	ENST00000318351		TCGA	LD	HNSC	TCGA-QK-A64Z-01A	YEATS2	chr3	183480067	+	HTR3C	chr3	183773100	+
In-frame	ENST00000418929	ENST00000598441		TCGA	LD	HNSC	TCGA-QK-A6IG-01A	PRR12	chr19	50105175	+	SNRNP70	chr19	49604647	+
In-frame	ENST00000418929	ENST00000221448		TCGA	LD	HNSC	TCGA-QK-A6IG-01A	PRR12	chr19	50105175	+	SNRNP70	chr19	49604647	+
5CDS-intron	ENST00000306833	ENST00000537971		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-5UTR	ENST00000306833	ENST00000011898		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000306833	ENST00000407263		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000306833	ENST00000492305		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000389082	ENST00000537971		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-5UTR	ENST00000389082	ENST00000011898		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000389082	ENST00000407263		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000389082	ENST00000492305		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000536562	ENST00000537971		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-5UTR	ENST00000536562	ENST00000011898		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000536562	ENST00000407263		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000536562	ENST00000492305		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000354285	ENST00000537971		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-5UTR	ENST00000354285	ENST00000011898		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000354285	ENST00000407263		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5CDS-intron	ENST00000354285	ENST00000492305		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5UTR-intron	ENST00000545147	ENST00000537971		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5UTR-5UTR	ENST00000545147	ENST00000011898		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5UTR-intron	ENST00000545147	ENST00000407263		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
5UTR-intron	ENST00000545147	ENST00000492305		TCGA	LD	HNSC	TCGA-QK-A6IH-01A	DENND5B	chr12	31648744	-	TSPAN9	chr12	3192819	+
In-frame	ENST00000362042	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000362042	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
In-frame	ENST00000585291	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000585291	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
In-frame	ENST00000357480	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000357480	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
In-frame	ENST00000361665	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000361665	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
intron-3CDS	ENST00000579481	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
intron-5UTR	ENST00000579481	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
In-frame	ENST00000582155	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000582155	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
In-frame	ENST00000583378	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000583378	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
In-frame	ENST00000536222	ENST00000006101		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000536222	ENST00000584666		TCGA	LD	HNSC	TCGA-QK-A6VC-01A	NFE2L1	chr17	46133960	+	COPZ2	chr17	46111310	-
intron-3CDS	ENST00000540235	ENST00000269534		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
intron-3CDS	ENST00000540235	ENST00000521789		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
intron-3CDS	ENST00000540235	ENST00000435506		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
Frame-shit	ENST00000393930	ENST00000269534		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
In-frame	ENST00000393930	ENST00000521789		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
In-frame	ENST00000393930	ENST00000435506		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
Frame-shit	ENST00000393931	ENST00000269534		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
In-frame	ENST00000393931	ENST00000521789		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
In-frame	ENST00000393931	ENST00000435506		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
Frame-shit	ENST00000310706	ENST00000269534		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
In-frame	ENST00000310706	ENST00000521789		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
In-frame	ENST00000310706	ENST00000435506		TCGA	LD	HNSC	TCGA-QK-A8Z7-01A	JUP	chr17	39914967	-	NT5C3B	chr17	39981909	-
5CDS-5UTR	ENST00000506198	ENST00000264229		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000506198	ENST00000541073		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000506198	ENST00000504228		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000506198	ENST00000505410		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-5UTR	ENST00000381334	ENST00000264229		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000381334	ENST00000541073		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000381334	ENST00000504228		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000381334	ENST00000505410		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-5UTR	ENST00000542052	ENST00000264229		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000542052	ENST00000541073		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000542052	ENST00000504228		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
5CDS-intron	ENST00000542052	ENST00000505410		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
3UTR-5UTR	ENST00000514904	ENST00000264229		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
3UTR-intron	ENST00000514904	ENST00000541073		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
3UTR-intron	ENST00000514904	ENST00000504228		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
3UTR-intron	ENST00000514904	ENST00000505410		TCGA	LD	HNSC	TCGA-QK-A8Z8-01A	TMEM165	chr4	56290810	+	KIAA1211	chr4	57138487	+
Frame-shit	ENST00000380649	ENST00000544935		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000380649	ENST00000537384		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000380649	ENST00000406797		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000380649	ENST00000403562		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000380649	ENST00000360274		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
5CDS-intron	ENST00000380649	ENST00000488474		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000457468	ENST00000544935		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000457468	ENST00000537384		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000457468	ENST00000406797		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000457468	ENST00000403562		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
Frame-shit	ENST00000457468	ENST00000360274		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
5CDS-intron	ENST00000457468	ENST00000488474		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-3CDS	ENST00000461025	ENST00000544935		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-3CDS	ENST00000461025	ENST00000537384		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-3CDS	ENST00000461025	ENST00000406797		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-3CDS	ENST00000461025	ENST00000403562		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-3CDS	ENST00000461025	ENST00000360274		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-intron	ENST00000461025	ENST00000488474		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	HADHA	chr2	26453060	-	PRKAR1B	chr7	635941	-
intron-3CDS	ENST00000511685	ENST00000344721		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000511685	ENST00000355292		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000511685	ENST00000358102		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000511685	ENST00000512865		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000511685	ENST00000511528		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000511685	ENST00000503313		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000406950	ENST00000344721		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000406950	ENST00000355292		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000406950	ENST00000358102		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000406950	ENST00000512865		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000406950	ENST00000511528		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000406950	ENST00000503313		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000502950	ENST00000344721		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000502950	ENST00000355292		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000502950	ENST00000358102		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000502950	ENST00000512865		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000502950	ENST00000511528		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000502950	ENST00000503313		TCGA	LD	HNSC	TCGA-QK-A8Z9-01B	TENM3	chr4	183370236	+	NR3C2	chr4	149116013	-
5CDS-3UTR	ENST00000251527	ENST00000339368		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000251527	ENST00000509152		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000251527	ENST00000526473		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000497111	ENST00000339368		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000497111	ENST00000509152		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000497111	ENST00000526473		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000435514	ENST00000339368		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000435514	ENST00000509152		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000435514	ENST00000526473		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ESYT2	chr7	158590633	-	ZNF595	chr4	59323	+
5UTR-3CDS	ENST00000405995	ENST00000276893		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
5UTR-intron	ENST00000405995	ENST00000381373		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
5UTR-3UTR	ENST00000405995	ENST00000485617		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3CDS	ENST00000357304	ENST00000276893		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-intron	ENST00000357304	ENST00000381373		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3UTR	ENST00000357304	ENST00000485617		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3CDS	ENST00000458550	ENST00000276893		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-intron	ENST00000458550	ENST00000381373		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3UTR	ENST00000458550	ENST00000485617		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3CDS	ENST00000372249	ENST00000276893		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-intron	ENST00000372249	ENST00000381373		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3UTR	ENST00000372249	ENST00000485617		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3CDS	ENST00000465931	ENST00000276893		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-intron	ENST00000465931	ENST00000381373		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
intron-3UTR	ENST00000465931	ENST00000485617		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	PRRC2B	chr9	134269650	+	UHRF2	chr9	6504593	+
5CDS-5UTR	ENST00000268616	ENST00000562840		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ZCCHC14	chr16	87493614	-	C16orf95	chr16	87174709	-
5CDS-intron	ENST00000268616	ENST00000253461		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ZCCHC14	chr16	87493614	-	C16orf95	chr16	87174709	-
5CDS-intron	ENST00000268616	ENST00000567970		TCGA	LD	HNSC	TCGA-QK-A8ZA-01A	ZCCHC14	chr16	87493614	-	C16orf95	chr16	87174709	-
3UTR-3CDS	ENST00000484501	ENST00000014930		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
3UTR-5UTR	ENST00000484501	ENST00000540916		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
3UTR-intron	ENST00000484501	ENST00000536942		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
intron-3CDS	ENST00000329582	ENST00000014930		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
intron-5UTR	ENST00000329582	ENST00000540916		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
intron-intron	ENST00000329582	ENST00000536942		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
intron-3CDS	ENST00000309741	ENST00000014930		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
intron-5UTR	ENST00000309741	ENST00000540916		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
intron-intron	ENST00000309741	ENST00000536942		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	IL20RB	chr3	136665137	+	HEBP1	chr12	13128413	-
Frame-shit	ENST00000449576	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000449576	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
Frame-shit	ENST00000396099	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000396099	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
Frame-shit	ENST00000425416	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000425416	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
Frame-shit	ENST00000256720	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000256720	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
Frame-shit	ENST00000396097	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000396097	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
Frame-shit	ENST00000404113	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000404113	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
intron-3CDS	ENST00000464517	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
intron-intron	ENST00000464517	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
intron-3CDS	ENST00000396098	ENST00000367287		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
intron-intron	ENST00000396098	ENST00000482943		TCGA	LD	HNSC	TCGA-QK-A8ZB-01A	LPIN1	chr2	11960640	+	TIMM17A	chr1	201926639	+
5CDS-5UTR	ENST00000320717	ENST00000339514		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000320717	ENST00000392318		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000320717	ENST00000304164		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000320717	ENST00000392316		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000320717	ENST00000439065		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000320717	ENST00000496992		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000339514		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000392318		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000304164		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-5UTR	ENST00000338435	ENST00000392316		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000338435	ENST00000439065		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
5CDS-intron	ENST00000338435	ENST00000496992		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000339514		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000392318		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000304164		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409626	ENST00000392316		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409626	ENST00000439065		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409626	ENST00000496992		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000339514		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000392318		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000304164		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409428	ENST00000392316		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409428	ENST00000439065		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409428	ENST00000496992		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000339514		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000392318		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000304164		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000409215	ENST00000392316		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409215	ENST00000439065		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000409215	ENST00000496992		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000339514		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000392318		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000304164		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-5UTR	ENST00000471443	ENST00000392316		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000471443	ENST00000439065		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
intron-intron	ENST00000471443	ENST00000496992		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	GLS	chr2	191766752	+	MYO1B	chr2	192141613	+
In-frame	ENST00000287996	ENST00000375643		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
5CDS-5UTR	ENST00000287996	ENST00000375629		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
5CDS-5UTR	ENST00000287996	ENST00000443024		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
5CDS-5UTR	ENST00000287996	ENST00000447699		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
5CDS-intron	ENST00000287996	ENST00000375627		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
5CDS-intron	ENST00000287996	ENST00000474340		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-3CDS	ENST00000486841	ENST00000375643		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-5UTR	ENST00000486841	ENST00000375629		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-5UTR	ENST00000486841	ENST00000443024		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-5UTR	ENST00000486841	ENST00000447699		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-intron	ENST00000486841	ENST00000375627		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-intron	ENST00000486841	ENST00000474340		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-3CDS	ENST00000375522	ENST00000375643		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-5UTR	ENST00000375522	ENST00000375629		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-5UTR	ENST00000375522	ENST00000443024		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-5UTR	ENST00000375522	ENST00000447699		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-intron	ENST00000375522	ENST00000375627		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
intron-intron	ENST00000375522	ENST00000474340		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	IPPK	chr9	95432190	-	IARS	chr9	95019082	-
3UTR-3CDS	ENST00000585876	ENST00000601387		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-3CDS	ENST00000585876	ENST00000597595		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-3CDS	ENST00000585876	ENST00000598034		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-3CDS	ENST00000585876	ENST00000600322		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-3CDS	ENST00000585876	ENST00000602185		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-3CDS	ENST00000585876	ENST00000253054		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-intron	ENST00000585876	ENST00000594700		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
3UTR-intron	ENST00000585876	ENST00000595636		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000588831	ENST00000601387		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000588831	ENST00000597595		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000588831	ENST00000598034		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000588831	ENST00000600322		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000588831	ENST00000602185		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000588831	ENST00000253054		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-intron	ENST00000588831	ENST00000594700		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5UTR-intron	ENST00000588831	ENST00000595636		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000246529	ENST00000601387		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000246529	ENST00000597595		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000246529	ENST00000598034		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000246529	ENST00000600322		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000246529	ENST00000602185		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000246529	ENST00000253054		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-intron	ENST00000246529	ENST00000594700		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
intron-intron	ENST00000246529	ENST00000595636		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	LRFN3	chr19	36426684	+	GMFG	chr19	39823766	-
5CDS-3UTR	ENST00000595618	ENST00000592540		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	MYO9B	chr19	17213367	+	SPC24	chr19	11257106	-
5CDS-3UTR	ENST00000594824	ENST00000592540		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	MYO9B	chr19	17213367	+	SPC24	chr19	11257106	-
5CDS-3UTR	ENST00000397274	ENST00000592540		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	MYO9B	chr19	17213367	+	SPC24	chr19	11257106	-
3UTR-3UTR	ENST00000593411	ENST00000592540		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	MYO9B	chr19	17213367	+	SPC24	chr19	11257106	-
intron-3CDS	ENST00000384994	ENST00000528852		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	NEAT1	chr11	65191485	+	CNIH2	chr11	66050506	+
intron-3CDS	ENST00000384994	ENST00000311445		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	NEAT1	chr11	65191485	+	CNIH2	chr11	66050506	+
intron-3UTR	ENST00000384994	ENST00000530519		TCGA	LD	HNSC	TCGA-RS-A6TO-01A	NEAT1	chr11	65191485	+	CNIH2	chr11	66050506	+
In-frame	ENST00000375712	ENST00000409299		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	KIF3B	chr20	30904677	+	PXMP4	chr20	32302542	-
In-frame	ENST00000375712	ENST00000344022		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	KIF3B	chr20	30904677	+	PXMP4	chr20	32302542	-
In-frame	ENST00000375712	ENST00000217398		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	KIF3B	chr20	30904677	+	PXMP4	chr20	32302542	-
In-frame	ENST00000418717	ENST00000409299		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	KIF3B	chr20	30904677	+	PXMP4	chr20	32302542	-
In-frame	ENST00000418717	ENST00000344022		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	KIF3B	chr20	30904677	+	PXMP4	chr20	32302542	-
In-frame	ENST00000418717	ENST00000217398		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	KIF3B	chr20	30904677	+	PXMP4	chr20	32302542	-
Frame-shit	ENST00000278886	ENST00000310998		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000278886	ENST00000535842		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000278886	ENST00000375921		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000278886	ENST00000375938		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
5CDS-3UTR	ENST00000278886	ENST00000375934		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
5CDS-3UTR	ENST00000278886	ENST00000375922		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000422516	ENST00000310998		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000422516	ENST00000535842		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000422516	ENST00000375921		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
Frame-shit	ENST00000422516	ENST00000375938		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
5CDS-3UTR	ENST00000422516	ENST00000375934		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
5CDS-3UTR	ENST00000422516	ENST00000375922		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
intron-3CDS	ENST00000464285	ENST00000310998		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
intron-3CDS	ENST00000464285	ENST00000535842		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
intron-3CDS	ENST00000464285	ENST00000375921		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
intron-3CDS	ENST00000464285	ENST00000375938		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
intron-3UTR	ENST00000464285	ENST00000375934		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
intron-3UTR	ENST00000464285	ENST00000375922		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	NINL	chr20	25469880	-	TTLL9	chr20	30525199	+
In-frame	ENST00000451813	ENST00000237536		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000451813	ENST00000279034		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000451813	ENST00000456801		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000451813	ENST00000357779		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000252015	ENST00000237536		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000252015	ENST00000279034		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000252015	ENST00000456801		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000252015	ENST00000357779		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
intron-3CDS	ENST00000539834	ENST00000237536		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
intron-3CDS	ENST00000539834	ENST00000279034		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
intron-3CDS	ENST00000539834	ENST00000456801		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
intron-3CDS	ENST00000539834	ENST00000357779		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000432634	ENST00000237536		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000432634	ENST00000279034		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000432634	ENST00000456801		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
In-frame	ENST00000432634	ENST00000357779		TCGA	LD	HNSC	TCGA-RS-A6TP-01A	TRPC4AP	chr20	33665849	-	SOGA1	chr20	35433305	-
5CDS-intron	ENST00000389857	ENST00000509081		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
5CDS-intron	ENST00000389857	ENST00000264400		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
5CDS-intron	ENST00000389857	ENST00000335927		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
5CDS-intron	ENST00000389857	ENST00000436139		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
5CDS-intron	ENST00000389857	ENST00000514889		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000331194	ENST00000509081		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000331194	ENST00000264400		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000331194	ENST00000335927		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000331194	ENST00000436139		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000331194	ENST00000514889		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000389856	ENST00000509081		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000389856	ENST00000264400		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000389856	ENST00000335927		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000389856	ENST00000436139		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000389856	ENST00000514889		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000553403	ENST00000509081		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000553403	ENST00000264400		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000553403	ENST00000335927		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000553403	ENST00000436139		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000553403	ENST00000514889		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000554165	ENST00000509081		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000554165	ENST00000264400		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000554165	ENST00000335927		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000554165	ENST00000436139		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
intron-intron	ENST00000554165	ENST00000514889		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	CCDC88C	chr14	91772109	-	RASGEF1B	chr4	82836511	-
3UTR-3CDS	ENST00000354371	ENST00000216487		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
3UTR-3UTR	ENST00000354371	ENST00000418924		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
3UTR-intron	ENST00000354371	ENST00000557762		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-3CDS	ENST00000392008	ENST00000216487		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-3UTR	ENST00000392008	ENST00000418924		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-intron	ENST00000392008	ENST00000557762		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-3CDS	ENST00000409334	ENST00000216487		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-3UTR	ENST00000409334	ENST00000418924		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-intron	ENST00000409334	ENST00000557762		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-3CDS	ENST00000409629	ENST00000216487		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-3UTR	ENST00000409629	ENST00000418924		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
intron-intron	ENST00000409629	ENST00000557762		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	COPS8	chr2	238007681	+	RIN3	chr14	93151332	+
Frame-shit	ENST00000356607	ENST00000377022		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
Frame-shit	ENST00000356607	ENST00000344008		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
5CDS-intron	ENST00000356607	ENST00000478728		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
Frame-shit	ENST00000538836	ENST00000377022		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
Frame-shit	ENST00000538836	ENST00000344008		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
5CDS-intron	ENST00000538836	ENST00000478728		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
intron-3CDS	ENST00000492696	ENST00000377022		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
intron-3CDS	ENST00000492696	ENST00000344008		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
intron-intron	ENST00000492696	ENST00000478728		TCGA	LD	HNSC	TCGA-T2-A6X0-01A	PEX14	chr1	10683173	+	CASZ1	chr1	10856707	-
In-frame	ENST00000393965	ENST00000290536		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
In-frame	ENST00000393965	ENST00000409585		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
In-frame	ENST00000393965	ENST00000536235		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5CDS-5UTR	ENST00000393965	ENST00000358434		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5CDS-intron	ENST00000393965	ENST00000464686		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
In-frame	ENST00000290418	ENST00000290536		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
In-frame	ENST00000290418	ENST00000409585		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
In-frame	ENST00000290418	ENST00000536235		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5CDS-5UTR	ENST00000290418	ENST00000358434		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5CDS-intron	ENST00000290418	ENST00000464686		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5UTR-3CDS	ENST00000471713	ENST00000290536		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5UTR-3CDS	ENST00000471713	ENST00000409585		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5UTR-3CDS	ENST00000471713	ENST00000536235		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5UTR-5UTR	ENST00000471713	ENST00000358434		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
5UTR-intron	ENST00000471713	ENST00000464686		TCGA	LD	HNSC	TCGA-T3-A92M-01A	CCDC142	chr2	74708350	-	M1AP	chr2	74808974	-
Frame-shit	ENST00000372398	ENST00000259339		TCGA	LD	HNSC	TCGA-T3-A92M-01A	NCS1	chr9	132985438	+	TOR1B	chr9	132566352	+
5CDS-3UTR	ENST00000372398	ENST00000486372		TCGA	LD	HNSC	TCGA-T3-A92M-01A	NCS1	chr9	132985438	+	TOR1B	chr9	132566352	+
intron-3CDS	ENST00000493042	ENST00000259339		TCGA	LD	HNSC	TCGA-T3-A92M-01A	NCS1	chr9	132985438	+	TOR1B	chr9	132566352	+
intron-3UTR	ENST00000493042	ENST00000486372		TCGA	LD	HNSC	TCGA-T3-A92M-01A	NCS1	chr9	132985438	+	TOR1B	chr9	132566352	+
Frame-shit	ENST00000458469	ENST00000259339		TCGA	LD	HNSC	TCGA-T3-A92M-01A	NCS1	chr9	132985438	+	TOR1B	chr9	132566352	+
5CDS-3UTR	ENST00000458469	ENST00000486372		TCGA	LD	HNSC	TCGA-T3-A92M-01A	NCS1	chr9	132985438	+	TOR1B	chr9	132566352	+
5UTR-3CDS	ENST00000344318	ENST00000216121		TCGA	LD	HNSC	TCGA-T3-A92M-01A	ZMAT5	chr22	30162861	-	NIPSNAP1	chr22	29957851	-
5UTR-intron	ENST00000344318	ENST00000494966		TCGA	LD	HNSC	TCGA-T3-A92M-01A	ZMAT5	chr22	30162861	-	NIPSNAP1	chr22	29957851	-
5UTR-3CDS	ENST00000397781	ENST00000216121		TCGA	LD	HNSC	TCGA-T3-A92M-01A	ZMAT5	chr22	30162861	-	NIPSNAP1	chr22	29957851	-
5UTR-intron	ENST00000397781	ENST00000494966		TCGA	LD	HNSC	TCGA-T3-A92M-01A	ZMAT5	chr22	30162861	-	NIPSNAP1	chr22	29957851	-
In-frame	ENST00000367094	ENST00000340366		TCGA	LD	HNSC	TCGA-UF-A719-01A	TULP4	chr6	158919844	+	FNDC1	chr6	159635977	+
In-frame	ENST00000367094	ENST00000297267		TCGA	LD	HNSC	TCGA-UF-A719-01A	TULP4	chr6	158919844	+	FNDC1	chr6	159635977	+
5CDS-intron	ENST00000367094	ENST00000480856		TCGA	LD	HNSC	TCGA-UF-A719-01A	TULP4	chr6	158919844	+	FNDC1	chr6	159635977	+
In-frame	ENST00000367097	ENST00000340366		TCGA	LD	HNSC	TCGA-UF-A719-01A	TULP4	chr6	158919844	+	FNDC1	chr6	159635977	+
In-frame	ENST00000367097	ENST00000297267		TCGA	LD	HNSC	TCGA-UF-A719-01A	TULP4	chr6	158919844	+	FNDC1	chr6	159635977	+
5CDS-intron	ENST00000367097	ENST00000480856		TCGA	LD	HNSC	TCGA-UF-A719-01A	TULP4	chr6	158919844	+	FNDC1	chr6	159635977	+
5CDS-intron	ENST00000509894	ENST00000369760		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000509894	ENST00000356489		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000509894	ENST00000320393		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-3UTR	ENST00000509894	ENST00000545529		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000509894	ENST00000486968		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000230510	ENST00000369760		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000230510	ENST00000356489		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000230510	ENST00000320393		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-3UTR	ENST00000230510	ENST00000545529		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000230510	ENST00000486968		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000369798	ENST00000369760		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000369798	ENST00000356489		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000369798	ENST00000320393		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-3UTR	ENST00000369798	ENST00000545529		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
5CDS-intron	ENST00000369798	ENST00000486968		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
3UTR-intron	ENST00000515751	ENST00000369760		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
3UTR-intron	ENST00000515751	ENST00000356489		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
3UTR-intron	ENST00000515751	ENST00000320393		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
3UTR-3UTR	ENST00000515751	ENST00000545529		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
3UTR-intron	ENST00000515751	ENST00000486968		TCGA	LD	HNSC	TCGA-UF-A71A-01A	TTK	chr6	80724303	+	BCKDHB	chr6	80910651	+
In-frame	ENST00000450466	ENST00000320580		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5CDS-intron	ENST00000450466	ENST00000529757		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5CDS-intron	ENST00000450466	ENST00000524815		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
In-frame	ENST00000383233	ENST00000320580		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5CDS-intron	ENST00000383233	ENST00000529757		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5CDS-intron	ENST00000383233	ENST00000524815		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
3UTR-3CDS	ENST00000542162	ENST00000320580		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
3UTR-intron	ENST00000542162	ENST00000529757		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
3UTR-intron	ENST00000542162	ENST00000524815		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
intron-3CDS	ENST00000399707	ENST00000320580		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
intron-intron	ENST00000399707	ENST00000529757		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
intron-intron	ENST00000399707	ENST00000524815		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000475185	ENST00000320580		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5UTR-intron	ENST00000475185	ENST00000529757		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
5UTR-intron	ENST00000475185	ENST00000524815		TCGA	LD	HNSC	TCGA-UF-A71B-01A	TMEM241	chr18	20889644	-	PACS1	chr11	65960957	+
intron-3CDS	ENST00000381352	ENST00000544915		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000381352	ENST00000395901		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000381352	ENST00000546179		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000381352	ENST00000311001		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000381352	ENST00000261178		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000381352	ENST00000266503		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-intron	ENST00000381352	ENST00000539558		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-intron	ENST00000381352	ENST00000542388		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000405154	ENST00000544915		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000405154	ENST00000395901		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000405154	ENST00000546179		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000405154	ENST00000311001		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000405154	ENST00000261178		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000405154	ENST00000266503		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000405154	ENST00000539558		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000405154	ENST00000542388		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000542865	ENST00000544915		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000542865	ENST00000395901		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000542865	ENST00000546179		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000542865	ENST00000311001		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000542865	ENST00000261178		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000542865	ENST00000266503		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000542865	ENST00000539558		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000542865	ENST00000542388		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000541490	ENST00000544915		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000541490	ENST00000395901		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000541490	ENST00000546179		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000541490	ENST00000311001		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000541490	ENST00000261178		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000541490	ENST00000266503		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000541490	ENST00000539558		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000541490	ENST00000542388		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000282884	ENST00000544915		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000282884	ENST00000395901		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000282884	ENST00000546179		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000282884	ENST00000311001		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000282884	ENST00000261178		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-3CDS	ENST00000282884	ENST00000266503		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000282884	ENST00000539558		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
3UTR-intron	ENST00000282884	ENST00000542388		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000538081	ENST00000544915		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000538081	ENST00000395901		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000538081	ENST00000546179		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000538081	ENST00000311001		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000538081	ENST00000261178		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-3CDS	ENST00000538081	ENST00000266503		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-intron	ENST00000538081	ENST00000539558		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
intron-intron	ENST00000538081	ENST00000542388		TCGA	LD	HNSC	TCGA-UF-A7J9-01A	RASSF8	chr12	26221856	+	ARNTL2	chr12	27553467	+
5CDS-intron	ENST00000394729	ENST00000535225		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000394729	ENST00000358657		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000394729	ENST00000453097		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000394729	ENST00000394856		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000394729	ENST00000514353		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000394729	ENST00000546663		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000330452	ENST00000535225		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000330452	ENST00000358657		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000330452	ENST00000453097		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000330452	ENST00000394856		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000330452	ENST00000514353		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
5CDS-intron	ENST00000330452	ENST00000546663		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
intron-intron	ENST00000477794	ENST00000535225		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
intron-intron	ENST00000477794	ENST00000358657		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
intron-intron	ENST00000477794	ENST00000453097		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
intron-intron	ENST00000477794	ENST00000394856		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
intron-intron	ENST00000477794	ENST00000514353		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
intron-intron	ENST00000477794	ENST00000546663		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	PRKCD	chr3	53224017	+	SLC4A8	chr12	51883484	+
Frame-shit	ENST00000334690	ENST00000302327		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
Frame-shit	ENST00000334690	ENST00000434682		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
Frame-shit	ENST00000357207	ENST00000302327		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
Frame-shit	ENST00000357207	ENST00000434682		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
intron-3CDS	ENST00000511409	ENST00000302327		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
intron-3CDS	ENST00000511409	ENST00000434682		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
intron-3CDS	ENST00000512476	ENST00000302327		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
intron-3CDS	ENST00000512476	ENST00000434682		TCGA	LD	HNSC	TCGA-UF-A7JA-01A	TRAPPC11	chr4	184600639	+	ING2	chr4	184431435	+
5UTR-5UTR	ENST00000339020	ENST00000508821		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-intron	ENST00000339020	ENST00000425382		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-intron	ENST00000339020	ENST00000438340		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-5UTR	ENST00000339020	ENST00000505959		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-5UTR	ENST00000507416	ENST00000508821		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-intron	ENST00000507416	ENST00000425382		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-intron	ENST00000507416	ENST00000438340		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
5UTR-5UTR	ENST00000507416	ENST00000505959		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SMIM15	chr5	60456915	-	ELOVL7	chr5	60095057	-
intron-3CDS	ENST00000364849	ENST00000522909		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SNHG6	chr8	67837672	-	PPP1R42	chr8	67923066	-
intron-3CDS	ENST00000364849	ENST00000324682		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SNHG6	chr8	67837672	-	PPP1R42	chr8	67923066	-
intron-intron	ENST00000364849	ENST00000517834		TCGA	LD	HNSC	TCGA-UF-A7JD-01A	SNHG6	chr8	67837672	-	PPP1R42	chr8	67923066	-
5CDS-intron	ENST00000541908	ENST00000535651		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000541908	ENST00000433979		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000541908	ENST00000538779		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000541908	ENST00000266497		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000541908	ENST00000536967		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000398864	ENST00000535651		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000398864	ENST00000433979		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000398864	ENST00000538779		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000398864	ENST00000266497		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000398864	ENST00000536967		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000266508	ENST00000535651		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000266508	ENST00000433979		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000266508	ENST00000538779		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000266508	ENST00000266497		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000266508	ENST00000536967		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000360995	ENST00000535651		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000360995	ENST00000433979		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000360995	ENST00000538779		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000360995	ENST00000266497		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5CDS-intron	ENST00000360995	ENST00000536967		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	AEBP2	chr12	19626289	+	PIK3C2G	chr12	18762469	+
5UTR-3CDS	ENST00000381989	ENST00000357250		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
5UTR-intron	ENST00000381989	ENST00000320755		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
5UTR-intron	ENST00000381989	ENST00000370499		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
5UTR-intron	ENST00000381989	ENST00000489611		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
5UTR-intron	ENST00000381989	ENST00000370496		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
intron-3CDS	ENST00000480576	ENST00000357250		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000320755		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000370499		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000489611		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
intron-intron	ENST00000480576	ENST00000370496		TCGA	LD	HNSC	TCGA-UF-A7JJ-01A	PARP4	chr13	25086844	-	COL9A1	chr6	70993523	-
In-frame	ENST00000331373	ENST00000347528		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
In-frame	ENST00000331373	ENST00000289734		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
In-frame	ENST00000331373	ENST00000379758		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
In-frame	ENST00000331373	ENST00000396942		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
In-frame	ENST00000331373	ENST00000396945		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
In-frame	ENST00000331373	ENST00000352337		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
In-frame	ENST00000331373	ENST00000265709		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000331373	ENST00000457297		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000331373	ENST00000522231		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000331373	ENST00000522543		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000331373	ENST00000314214		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000331373	ENST00000521407		TCGA	LD	HNSC	TCGA-UF-A7JK-01A	POMK	chr8	42958973	+	ANK1	chr8	41591587	-
5CDS-5UTR	ENST00000227266	ENST00000532855		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	CTSC	chr11	88068105	-	MMP12	chr11	102743842	-
5CDS-5UTR	ENST00000524463	ENST00000532855		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	CTSC	chr11	88068105	-	MMP12	chr11	102743842	-
5CDS-5UTR	ENST00000529974	ENST00000532855		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	CTSC	chr11	88068105	-	MMP12	chr11	102743842	-
5UTR-5UTR	ENST00000393301	ENST00000532855		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	CTSC	chr11	88068105	-	MMP12	chr11	102743842	-
In-frame	ENST00000545249	ENST00000356136		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-5UTR	ENST00000545249	ENST00000528420		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000545249	ENST00000533454		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000545249	ENST00000531818		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000545249	ENST00000532130		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000545249	ENST00000539288		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000545249	ENST00000525872		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000545249	ENST00000538870		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-3CDS	ENST00000535107	ENST00000356136		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-5UTR	ENST00000535107	ENST00000528420		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000535107	ENST00000533454		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000535107	ENST00000531818		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000535107	ENST00000532130		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000535107	ENST00000539288		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000535107	ENST00000525872		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000535107	ENST00000538870		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
In-frame	ENST00000278671	ENST00000356136		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-5UTR	ENST00000278671	ENST00000528420		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000278671	ENST00000533454		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000278671	ENST00000531818		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000278671	ENST00000532130		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000278671	ENST00000539288		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000278671	ENST00000525872		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5CDS-intron	ENST00000278671	ENST00000538870		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-3CDS	ENST00000538404	ENST00000356136		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-5UTR	ENST00000538404	ENST00000528420		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000538404	ENST00000533454		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000538404	ENST00000531818		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000538404	ENST00000532130		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000538404	ENST00000539288		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000538404	ENST00000525872		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
intron-intron	ENST00000538404	ENST00000538870		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-3CDS	ENST00000539797	ENST00000356136		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-5UTR	ENST00000539797	ENST00000528420		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-intron	ENST00000539797	ENST00000533454		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-intron	ENST00000539797	ENST00000531818		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-intron	ENST00000539797	ENST00000532130		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-intron	ENST00000539797	ENST00000539288		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-intron	ENST00000539797	ENST00000525872		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
5UTR-intron	ENST00000539797	ENST00000538870		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	LAMTOR1	chr11	71809335	-	UVRAG	chr11	75562928	+
In-frame	ENST00000320580	ENST00000256999		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
In-frame	ENST00000320580	ENST00000356696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
In-frame	ENST00000320580	ENST00000343844		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
In-frame	ENST00000320580	ENST00000340334		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
In-frame	ENST00000320580	ENST00000533034		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
5CDS-intron	ENST00000320580	ENST00000525629		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000529757	ENST00000256999		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000529757	ENST00000356696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000529757	ENST00000343844		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000529757	ENST00000340334		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000529757	ENST00000533034		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-intron	ENST00000529757	ENST00000525629		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000524815	ENST00000256999		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000524815	ENST00000356696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000524815	ENST00000343844		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000524815	ENST00000340334		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-3CDS	ENST00000524815	ENST00000533034		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
intron-intron	ENST00000524815	ENST00000525629		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	PACS1	chr11	65961044	+	FOLH1	chr11	49179595	-
In-frame	ENST00000356136	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
In-frame	ENST00000356136	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
In-frame	ENST00000356136	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000356136	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000356136	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000356136	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000356136	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000356136	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000528420	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000528420	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000528420	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000528420	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000528420	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000528420	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000528420	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000528420	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000533454	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000533454	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000533454	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000533454	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000533454	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000533454	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000533454	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000533454	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000531818	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000531818	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000531818	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000531818	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000531818	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000531818	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000531818	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000531818	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000532130	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000532130	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000532130	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000532130	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000532130	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000532130	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000532130	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000532130	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000539288	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000539288	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000539288	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000539288	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000539288	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000539288	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000539288	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000539288	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000525872	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000525872	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000525872	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000525872	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000525872	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000525872	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000525872	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000525872	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000538870	ENST00000545643		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000538870	ENST00000537760		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000538870	ENST00000414023		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000538870	ENST00000529237		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000538870	ENST00000256196		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000538870	ENST00000534746		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000538870	ENST00000526063		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000538870	ENST00000532814		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	UVRAG	chr11	75526569	+	RRAS2	chr11	14317401	-
Frame-shit	ENST00000526343	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000526343	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000526343	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000526343	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000526343	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000526343	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000526343	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000526343	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000282441	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000282441	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000537274	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000537274	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000345877	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000345877	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000531439	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000531439	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
Frame-shit	ENST00000524575	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
5CDS-intron	ENST00000524575	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000449833		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000409161		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000423696		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000338508		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000409530		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000449116		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-3CDS	ENST00000528834	ENST00000357171		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-intron	ENST00000528834	ENST00000468619		TCGA	LD	HNSC	TCGA-UF-A7JV-01A	YAP1	chr11	102033302	+	SHANK2	chr11	70349036	-
intron-5UTR	ENST00000277198	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000277198	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000277198	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000277198	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000277198	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000297979	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000297979	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000297979	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000297979	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000297979	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000375315	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000375315	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-5UTR	ENST00000375315	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000375315	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
5CDS-intron	ENST00000375315	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000395357	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000395357	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000395357	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000395357	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000395357	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000425634	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000425634	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000425634	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000425634	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000425634	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000433691	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000433691	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000433691	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000433691	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000433691	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000473778	ENST00000577830		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000473778	ENST00000407144		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-5UTR	ENST00000473778	ENST00000360238		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000473778	ENST00000577840		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-intron	ENST00000473778	ENST00000578357		TCGA	LD	HNSC	TCGA-UP-A6WW-01A	C9orf3	chr9	97718297	+	CUEDC1	chr17	55963240	-
intron-3CDS	ENST00000469172	ENST00000448701		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
intron-3CDS	ENST00000469172	ENST00000301420		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
Frame-shit	ENST00000265866	ENST00000448701		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
Frame-shit	ENST00000265866	ENST00000301420		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
intron-3CDS	ENST00000441000	ENST00000448701		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
intron-3CDS	ENST00000441000	ENST00000301420		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
intron-3CDS	ENST00000354695	ENST00000448701		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
intron-3CDS	ENST00000354695	ENST00000301420		TCGA	RV	KICH	TCGA-KM-8441-01A	HNRNPH3	chr10	70102944	+	KLK1	chr19	51327043	-
intron-3CDS	ENST00000269886	ENST00000421182		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000269886	ENST00000357867		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000269886	ENST00000323926		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000269886	ENST00000336916		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000354785		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000357009		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000346544		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000345488		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000359671		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000446046		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000443816		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000432072		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000269886	ENST00000356005		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-intron	ENST00000269886	ENST00000490833		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-intron	ENST00000269886	ENST00000426059		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000598564	ENST00000421182		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000598564	ENST00000357867		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000598564	ENST00000323926		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-3CDS	ENST00000598564	ENST00000336916		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000354785		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000357009		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000346544		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000345488		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000359671		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000446046		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000443816		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000432072		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-5UTR	ENST00000598564	ENST00000356005		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-intron	ENST00000598564	ENST00000490833		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
intron-intron	ENST00000598564	ENST00000426059		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
Frame-shit	ENST00000417295	ENST00000421182		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
Frame-shit	ENST00000417295	ENST00000357867		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
Frame-shit	ENST00000417295	ENST00000323926		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
Frame-shit	ENST00000417295	ENST00000336916		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000354785		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000357009		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000346544		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000345488		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000359671		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000446046		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000443816		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000432072		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000417295	ENST00000356005		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-intron	ENST00000417295	ENST00000490833		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-intron	ENST00000417295	ENST00000426059		TCGA	RV	KICH	TCGA-KN-8427-01A	SH3GL1	chr19	4361313	-	FN1	chr2	216300790	-
5CDS-5UTR	ENST00000355327	ENST00000268154		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000355327	ENST00000560908		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
5CDS-5UTR	ENST00000261862	ENST00000268154		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000261862	ENST00000560908		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000357769	ENST00000268154		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000357769	ENST00000560908		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000567838	ENST00000268154		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000567838	ENST00000560908		TCGA	RV	KICH	TCGA-KL-8341-01A	THSD4	chr15	71549054	+	ZNF710	chr15	90610342	+
5CDS-5UTR	ENST00000249837	ENST00000025008		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000249837	ENST00000435644		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000249837	ENST00000521611		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-intron	ENST00000249837	ENST00000539297		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000261517	ENST00000025008		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000261517	ENST00000435644		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000261517	ENST00000521611		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-intron	ENST00000261517	ENST00000539297		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000395896	ENST00000025008		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000395896	ENST00000435644		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000395896	ENST00000521611		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-intron	ENST00000395896	ENST00000539297		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000395898	ENST00000025008		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000395898	ENST00000435644		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-5UTR	ENST00000395898	ENST00000521611		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
5CDS-intron	ENST00000395898	ENST00000539297		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
intron-5UTR	ENST00000558919	ENST00000025008		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
intron-5UTR	ENST00000558919	ENST00000435644		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
intron-5UTR	ENST00000558919	ENST00000521611		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
intron-intron	ENST00000558919	ENST00000539297		TCGA	RV	KICH	TCGA-KL-8341-01A	VPS13C	chr15	62292763	-	RB1CC1	chr8	53599527	-
In-frame	ENST00000252032	ENST00000379453		TCGA	RV	KICH	TCGA-KL-8328-01A	C20orf194	chr20	3388122	-	ADRA1D	chr20	4202777	-
intron-3CDS	ENST00000453730	ENST00000379453		TCGA	RV	KICH	TCGA-KL-8328-01A	C20orf194	chr20	3388122	-	ADRA1D	chr20	4202777	-
intron-3CDS	ENST00000498079	ENST00000379453		TCGA	RV	KICH	TCGA-KL-8328-01A	C20orf194	chr20	3388122	-	ADRA1D	chr20	4202777	-
5CDS-5UTR	ENST00000454584	ENST00000316399		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000454584	ENST00000396356		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000454584	ENST00000352083		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000454584	ENST00000528252		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000454584	ENST00000527619		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000454584	ENST00000528429		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000454584	ENST00000533658		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000316399		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000396356		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000352083		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000528252		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000527619		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000528429		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000278187	ENST00000533658		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000316399		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000396356		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000352083		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000528252		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000527619		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000528429		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
5CDS-5UTR	ENST00000433790	ENST00000533658		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000316399		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000396356		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000352083		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000528252		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000527619		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000528429		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
3UTR-5UTR	ENST00000533092	ENST00000533658		TCGA	RV	KICH	TCGA-KL-8339-01A	GAS2	chr11	22696560	+	SOX6	chr11	16362798	-
Frame-shit	ENST00000264933	ENST00000310581		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000264933	ENST00000296820		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000264933	ENST00000334602		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000264933	ENST00000508104		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000264933	ENST00000522877		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000505221	ENST00000310581		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000505221	ENST00000296820		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000505221	ENST00000334602		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000505221	ENST00000508104		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000505221	ENST00000522877		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000509581	ENST00000310581		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000509581	ENST00000296820		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000509581	ENST00000334602		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000509581	ENST00000508104		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000509581	ENST00000522877		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000507528	ENST00000310581		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000507528	ENST00000296820		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000507528	ENST00000334602		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000507528	ENST00000508104		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000507528	ENST00000522877		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
intron-3CDS	ENST00000511482	ENST00000310581		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
intron-3CDS	ENST00000511482	ENST00000296820		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
intron-3CDS	ENST00000511482	ENST00000334602		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
intron-3CDS	ENST00000511482	ENST00000508104		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
intron-5UTR	ENST00000511482	ENST00000522877		TCGA	RV	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1294781	-
Frame-shit	ENST00000263857	ENST00000165698		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000535845		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000541910		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000538924		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000540790		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000473407		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000409681	ENST00000165698		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000535845		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000541910		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000538924		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000540790		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000473407		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-3CDS	ENST00000483538	ENST00000165698		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000535845		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000541910		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000538924		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000540790		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000473407		TCGA	RV	KICH	TCGA-KO-8411-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000236671	ENST00000322349		TCGA	RV	KICH	TCGA-KL-8332-01A	CTSD	chr11	1773982	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000236671	ENST00000547833		TCGA	RV	KICH	TCGA-KL-8332-01A	CTSD	chr11	1773982	-	EEA1	chr12	93229203	-
Frame-shit	ENST00000443617	ENST00000399231		TCGA	RV	KICH	TCGA-KL-8341-01A	HERC1	chr15	63904450	-	MYO5A	chr15	52622696	-
Frame-shit	ENST00000443617	ENST00000356338		TCGA	RV	KICH	TCGA-KL-8341-01A	HERC1	chr15	63904450	-	MYO5A	chr15	52622696	-
Frame-shit	ENST00000443617	ENST00000358212		TCGA	RV	KICH	TCGA-KL-8341-01A	HERC1	chr15	63904450	-	MYO5A	chr15	52622696	-
Frame-shit	ENST00000443617	ENST00000399233		TCGA	RV	KICH	TCGA-KL-8341-01A	HERC1	chr15	63904450	-	MYO5A	chr15	52622696	-
Frame-shit	ENST00000443617	ENST00000553916		TCGA	RV	KICH	TCGA-KL-8341-01A	HERC1	chr15	63904450	-	MYO5A	chr15	52622696	-
intron-5UTR	ENST00000319592	ENST00000397002		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000319592	ENST00000561028		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000319592	ENST00000396997		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000319592	ENST00000560550		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000319592	ENST00000396995		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
5UTR-5UTR	ENST00000381793	ENST00000397002		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
5UTR-5UTR	ENST00000381793	ENST00000561028		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
5UTR-5UTR	ENST00000381793	ENST00000396997		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
5UTR-intron	ENST00000381793	ENST00000560550		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
5UTR-intron	ENST00000381793	ENST00000396995		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000381795	ENST00000397002		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000381795	ENST00000561028		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000381795	ENST00000396997		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000381795	ENST00000560550		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000381795	ENST00000396995		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000295971	ENST00000397002		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000295971	ENST00000561028		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000295971	ENST00000396997		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000295971	ENST00000560550		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000295971	ENST00000396995		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000514014	ENST00000397002		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000514014	ENST00000561028		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000514014	ENST00000396997		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000514014	ENST00000560550		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000514014	ENST00000396995		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000515809	ENST00000397002		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000515809	ENST00000561028		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-5UTR	ENST00000515809	ENST00000396997		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000515809	ENST00000560550		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
intron-intron	ENST00000515809	ENST00000396995		TCGA	RV	KICH	TCGA-KL-8339-01A	RBM47	chr4	40516533	-	NRL	chr14	24552084	-
In-frame	ENST00000273666	ENST00000336596		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000273666	ENST00000452448		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000273666	ENST00000494014		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000471454	ENST00000336596		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000471454	ENST00000452448		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000471454	ENST00000494014		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000472879	ENST00000336596		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000472879	ENST00000452448		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000472879	ENST00000494014		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000497029	ENST00000336596		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000497029	ENST00000452448		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000497029	ENST00000494014		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000492541	ENST00000336596		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000492541	ENST00000452448		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
In-frame	ENST00000492541	ENST00000494014		TCGA	RV	KICH	TCGA-KL-8341-01A	STXBP5L	chr3	121100379	+	EPHA3	chr3	89444987	+
5CDS-5UTR	ENST00000399332	ENST00000534993		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000543805		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000397071		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000335125		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000558753		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000537912		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000545240		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000399332	ENST00000382755		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000534993		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000543805		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000397071		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000335125		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000558753		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000537912		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000545240		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
5CDS-5UTR	ENST00000553700	ENST00000382755		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000534993		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000543805		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000397071		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000335125		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000558753		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000537912		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000545240		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-5UTR	ENST00000556474	ENST00000382755		TCGA	RV	KICH	TCGA-KL-8339-01A	HECTD1	chr14	31614013	-	DHRS4L2	chr14	24459391	+
intron-3CDS	ENST00000424843	ENST00000361115		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
intron-5UTR	ENST00000424843	ENST00000513525		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
intron-5UTR	ENST00000424843	ENST00000537013		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
In-frame	ENST00000276654	ENST00000361115		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
5CDS-5UTR	ENST00000276654	ENST00000513525		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
5CDS-5UTR	ENST00000276654	ENST00000537013		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
intron-3CDS	ENST00000518375	ENST00000361115		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
intron-5UTR	ENST00000518375	ENST00000513525		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
intron-5UTR	ENST00000518375	ENST00000537013		TCGA	RV	KICH	TCGA-KL-8341-01A	LRP12	chr8	105544135	-	CCL28	chr5	43388578	-
5CDS-intron	ENST00000346916	ENST00000311028		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000346916	ENST00000395923		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000346916	ENST00000220931		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000346916	ENST00000521599		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000346916	ENST00000522951		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000346916	ENST00000519508		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000346916	ENST00000521371		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000311028		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000395923		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000220931		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000521599		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000522951		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000519508		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000545507	ENST00000521371		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000311028		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000395923		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000220931		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000521599		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000522951		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000519508		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000333511	ENST00000521371		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000311028		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000395923		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000220931		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000521599		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000522951		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000519508		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000353555	ENST00000521371		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000311028		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000395923		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000220931		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000521599		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000522951		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000519508		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
intron-intron	ENST00000574970	ENST00000521371		TCGA	RV	KICH	TCGA-KL-8339-01A	BSG	chr19	583492	+	NCALD	chr8	102813898	-
5CDS-5UTR	ENST00000216181	ENST00000407479		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
5CDS-5UTR	ENST00000216181	ENST00000246949		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
5CDS-5UTR	ENST00000216181	ENST00000414110		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
5CDS-intron	ENST00000216181	ENST00000575152		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-5UTR	ENST00000475726	ENST00000407479		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-5UTR	ENST00000475726	ENST00000246949		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-5UTR	ENST00000475726	ENST00000414110		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-intron	ENST00000475726	ENST00000575152		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-5UTR	ENST00000401701	ENST00000407479		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-5UTR	ENST00000401701	ENST00000246949		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-5UTR	ENST00000401701	ENST00000414110		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
intron-intron	ENST00000401701	ENST00000575152		TCGA	RV	KICH	TCGA-KM-8438-01A	MYH9	chr22	36697580	-	DNASE1	chr16	3704962	+
Frame-shit	ENST00000292205	ENST00000280326		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000292205	ENST00000503026		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000292205	ENST00000515390		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000292205	ENST00000515676		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000292205	ENST00000506600		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
In-frame	ENST00000368474	ENST00000280326		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368474	ENST00000503026		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368474	ENST00000515390		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368474	ENST00000515676		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368474	ENST00000506600		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000368471	ENST00000280326		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368471	ENST00000503026		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368471	ENST00000515390		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368471	ENST00000515676		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000368471	ENST00000506600		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000471068	ENST00000280326		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
intron-intron	ENST00000471068	ENST00000503026		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
intron-intron	ENST00000471068	ENST00000515390		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
intron-intron	ENST00000471068	ENST00000515676		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
intron-intron	ENST00000471068	ENST00000506600		TCGA	RV	KICH	TCGA-KM-8639-01A	ADAR	chr1	154554538	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000476233	ENST00000468888		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476233	ENST00000399362		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476233	ENST00000539981		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476233	ENST00000359576		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476233	ENST00000307312		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476233	ENST00000480013		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476233	ENST00000461133		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476233	ENST00000313350		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476233	ENST00000487200		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476233	ENST00000333778		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476233	ENST00000482896		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000468888		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000399362		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000539981		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000359576		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000307312		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000480013		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000354667	ENST00000461133		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000354667	ENST00000313350		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000354667	ENST00000487200		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000354667	ENST00000333778		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000354667	ENST00000482896		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000468888		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000399362		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000539981		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000359576		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000307312		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000480013		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
In-frame	ENST00000356674	ENST00000461133		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000356674	ENST00000313350		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000356674	ENST00000487200		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000356674	ENST00000333778		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000356674	ENST00000482896		TCGA	RV	KICH	TCGA-KL-8339-01A	HNRNPA2B1	chr7	26231467	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000543304	ENST00000278590		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
Frame-shit	ENST00000543304	ENST00000528673		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
5CDS-5UTR	ENST00000543304	ENST00000453089		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
In-frame	ENST00000334805	ENST00000278590		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
In-frame	ENST00000334805	ENST00000528673		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
5CDS-5UTR	ENST00000334805	ENST00000453089		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
intron-3CDS	ENST00000538536	ENST00000278590		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
intron-3CDS	ENST00000538536	ENST00000528673		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
intron-5UTR	ENST00000538536	ENST00000453089		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
5UTR-3CDS	ENST00000538437	ENST00000278590		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
5UTR-3CDS	ENST00000538437	ENST00000528673		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
5UTR-5UTR	ENST00000538437	ENST00000453089		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
intron-3CDS	ENST00000545082	ENST00000278590		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
intron-3CDS	ENST00000545082	ENST00000528673		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
intron-5UTR	ENST00000545082	ENST00000453089		TCGA	RV	KICH	TCGA-KL-8339-01A	STARD10	chr11	72492020	-	ZC3H12C	chr11	110007388	+
5CDS-intron	ENST00000437600	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000437600	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000437600	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000437600	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000437600	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000292538	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000292538	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000292538	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000292538	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000292538	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393824	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393824	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393824	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393824	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393824	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000547394	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000547394	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000547394	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000547394	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000547394	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000360264	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000360264	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000360264	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000360264	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000360264	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000425244	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000425244	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000425244	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000425244	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000425244	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000292535	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000292535	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000292535	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000292535	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000292535	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549414	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549414	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549414	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549414	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549414	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000556210	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000556210	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000556210	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000556210	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000556210	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000550008	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000550008	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000550008	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000550008	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000550008	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000546411	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000546411	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000546411	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000546411	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000546411	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000560541	ENST00000513761		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000560541	ENST00000347613		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000560541	ENST00000360642		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000560541	ENST00000504131		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000560541	ENST00000506924		TCGA	RV	KICH	TCGA-KL-8341-01A	CUX1	chr7	101927249	+	CLCN3	chr4	170623929	+
intron-3CDS	ENST00000529261	ENST00000379079		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
intron-3CDS	ENST00000529261	ENST00000332351		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
intron-3CDS	ENST00000529261	ENST00000530998		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
intron-3CDS	ENST00000529261	ENST00000448076		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000278353	ENST00000379079		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000278353	ENST00000332351		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000278353	ENST00000530998		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000278353	ENST00000448076		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000395700	ENST00000379079		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000395700	ENST00000332351		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000395700	ENST00000530998		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
In-frame	ENST00000395700	ENST00000448076		TCGA	RV	KICH	TCGA-KL-8335-01A	HSD17B12	chr11	43702537	+	WT1	chr11	32450165	-
Frame-shit	ENST00000443503	ENST00000264741		TCGA	RV	KICH	TCGA-KL-8339-01A	CTDSPL	chr3	37903769	+	ITGA9	chr3	37774203	+
5CDS-intron	ENST00000443503	ENST00000422441		TCGA	RV	KICH	TCGA-KL-8339-01A	CTDSPL	chr3	37903769	+	ITGA9	chr3	37774203	+
Frame-shit	ENST00000273179	ENST00000264741		TCGA	RV	KICH	TCGA-KL-8339-01A	CTDSPL	chr3	37903769	+	ITGA9	chr3	37774203	+
5CDS-intron	ENST00000273179	ENST00000422441		TCGA	RV	KICH	TCGA-KL-8339-01A	CTDSPL	chr3	37903769	+	ITGA9	chr3	37774203	+
intron-3CDS	ENST00000310189	ENST00000264741		TCGA	RV	KICH	TCGA-KL-8339-01A	CTDSPL	chr3	37903769	+	ITGA9	chr3	37774203	+
intron-intron	ENST00000310189	ENST00000422441		TCGA	RV	KICH	TCGA-KL-8339-01A	CTDSPL	chr3	37903769	+	ITGA9	chr3	37774203	+
In-frame	ENST00000466830	ENST00000396328		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
In-frame	ENST00000466830	ENST00000557913		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
In-frame	ENST00000466830	ENST00000360509		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
In-frame	ENST00000466830	ENST00000559418		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
5CDS-5UTR	ENST00000466830	ENST00000567224		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000423894	ENST00000396328		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000423894	ENST00000557913		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000423894	ENST00000360509		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000423894	ENST00000559418		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-5UTR	ENST00000423894	ENST00000567224		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000469102	ENST00000396328		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000469102	ENST00000557913		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000469102	ENST00000360509		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-3CDS	ENST00000469102	ENST00000559418		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
intron-5UTR	ENST00000469102	ENST00000567224		TCGA	RV	KICH	TCGA-KL-8341-01A	CMC1	chr3	28304871	+	WDR72	chr15	53815519	-
In-frame	ENST00000316399	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000316399	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000316399	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
5CDS-intron	ENST00000316399	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000396356	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000396356	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000396356	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
5CDS-intron	ENST00000396356	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000352083	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000352083	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000352083	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
5CDS-intron	ENST00000352083	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
Frame-shit	ENST00000528252	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
Frame-shit	ENST00000528252	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
Frame-shit	ENST00000528252	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
5CDS-intron	ENST00000528252	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000527619	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000527619	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000527619	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
5CDS-intron	ENST00000527619	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
Frame-shit	ENST00000528429	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
Frame-shit	ENST00000528429	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
Frame-shit	ENST00000528429	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
5CDS-intron	ENST00000528429	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
intron-3CDS	ENST00000533658	ENST00000278174		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
intron-3CDS	ENST00000533658	ENST00000530907		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
intron-3CDS	ENST00000533658	ENST00000528120		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
intron-intron	ENST00000533658	ENST00000532261		TCGA	RV	KICH	TCGA-KL-8339-01A	SOX6	chr11	16339992	-	BTBD10	chr11	13427403	-
In-frame	ENST00000311852	ENST00000555209		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
In-frame	ENST00000311852	ENST00000359890		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
In-frame	ENST00000311852	ENST00000399922		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
In-frame	ENST00000311852	ENST00000346528		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
In-frame	ENST00000311852	ENST00000542016		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
5CDS-intron	ENST00000311852	ENST00000556984		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
3UTR-3CDS	ENST00000548162	ENST00000555209		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
3UTR-3CDS	ENST00000548162	ENST00000359890		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
3UTR-3CDS	ENST00000548162	ENST00000399922		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
3UTR-3CDS	ENST00000548162	ENST00000346528		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
3UTR-3CDS	ENST00000548162	ENST00000542016		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
3UTR-intron	ENST00000548162	ENST00000556984		TCGA	RV	KICH	TCGA-KL-8339-01A	MMP14	chr14	23306134	+	RBM23	chr14	23371591	-
intron-intron	ENST00000422794	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000422794	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000397602	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000397602	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000442682	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000442682	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000458494	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000458494	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000413208	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000413208	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	TMEM213	chr7	138491504	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000532456	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000532456	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000539648	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000539648	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000528499	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000528499	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000263574	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000263574	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000345598	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000345598	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000338167	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000338167	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000278756	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000278756	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000543137	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000543137	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000237623	ENST00000300134		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000237623	ENST00000538913		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000237623	ENST00000543873		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000237623	ENST00000556155		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000237623	ENST00000537215		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000237623	ENST00000454075		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000395080	ENST00000300134		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000395080	ENST00000538913		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000395080	ENST00000543873		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000395080	ENST00000556155		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000395080	ENST00000537215		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000395080	ENST00000454075		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000360804	ENST00000300134		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000360804	ENST00000538913		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000360804	ENST00000543873		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000360804	ENST00000556155		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000360804	ENST00000537215		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000360804	ENST00000454075		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509659	ENST00000300134		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509659	ENST00000538913		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509659	ENST00000543873		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509659	ENST00000556155		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509659	ENST00000537215		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509659	ENST00000454075		TCGA	RV	KICH	TCGA-KN-8418-01A	SPP1	chr4	88904562	+	STAT6	chr12	57496773	-
5CDS-3UTR	ENST00000421865	ENST00000498112		TCGA	RV	KICH	TCGA-KN-8428-01A	LAMA2	chr6	129204502	+	C6orf58	chr6	127899831	+
5CDS-3UTR	ENST00000421865	ENST00000329722		TCGA	RV	KICH	TCGA-KN-8428-01A	LAMA2	chr6	129204502	+	C6orf58	chr6	127899831	+
intron-3UTR	ENST00000498257	ENST00000498112		TCGA	RV	KICH	TCGA-KN-8428-01A	LAMA2	chr6	129204502	+	C6orf58	chr6	127899831	+
intron-3UTR	ENST00000498257	ENST00000329722		TCGA	RV	KICH	TCGA-KN-8428-01A	LAMA2	chr6	129204502	+	C6orf58	chr6	127899831	+
5CDS-intron	ENST00000248553	ENST00000264818		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000248553	ENST00000524462		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000248553	ENST00000525621		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000248553	ENST00000529370		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000248553	ENST00000529422		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000429938	ENST00000264818		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000429938	ENST00000524462		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000429938	ENST00000525621		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000429938	ENST00000529370		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000429938	ENST00000529422		TCGA	RV	KICH	TCGA-KM-8442-01A	HSPB1	chr7	75933612	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000313949	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000313949	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371098	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371098	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371075	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371075	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371100	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371100	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371099	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371099	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371102	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371102	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000464624	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000464624	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000306120	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000306120	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371095	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371095	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371085	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000371085	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000354359	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000354359	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000265620	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000265620	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000306090	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000306090	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371081	ENST00000371917		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000371081	ENST00000493140		TCGA	RV	KICH	TCGA-KN-8423-01A	GNAS	chr20	57486241	+	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000231368	ENST00000424459		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
Frame-shit	ENST00000231368	ENST00000514387		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
Frame-shit	ENST00000231368	ENST00000506184		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
Frame-shit	ENST00000231368	ENST00000454432		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
Frame-shit	ENST00000231368	ENST00000511209		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
Frame-shit	ENST00000231368	ENST00000264779		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
Frame-shit	ENST00000231368	ENST00000538707		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000424459		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000514387		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000506184		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000454432		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000511209		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000264779		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
intron-3CDS	ENST00000395770	ENST00000538707		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000424459		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000514387		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000506184		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000454432		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000511209		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000264779		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
3UTR-3CDS	ENST00000395784	ENST00000538707		TCGA	RV	KICH	TCGA-KM-8443-01A	LNPEP	chr5	96271878	+	GPBP1	chr5	56545281	+
5CDS-3UTR	ENST00000313949	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000313949	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371098	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371098	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371075	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371075	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371100	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371100	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371099	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371099	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371102	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371102	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000464624	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000464624	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000306120	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000306120	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371095	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371095	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371085	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371085	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000354359	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000354359	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000265620	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000265620	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000306090	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000306090	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371081	ENST00000318789		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371081	ENST00000475937		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000493089		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000484350		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000318779		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000491238		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000498215		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000468577		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000472382		TCGA	RV	KICH	TCGA-KM-8442-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000514985	ENST00000313164		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
5CDS-intron	ENST00000514985	ENST00000494960		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000511224	ENST00000313164		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000511224	ENST00000494960		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000506577	ENST00000313164		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000506577	ENST00000494960		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000507920	ENST00000313164		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000507920	ENST00000494960		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000509276	ENST00000313164		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000509276	ENST00000494960		TCGA	RV	KICH	TCGA-KN-8432-01A	SEPP1	chr5	42799982	-	C7	chr5	40954982	+
intron-intron	ENST00000544600	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	RHCG	chr15	90014642	-	C7	chr5	40954982	+
intron-intron	ENST00000544600	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	RHCG	chr15	90014642	-	C7	chr5	40954982	+
5CDS-intron	ENST00000268122	ENST00000313164		TCGA	RV	KICH	TCGA-KL-8325-01A	RHCG	chr15	90014642	-	C7	chr5	40954982	+
5CDS-intron	ENST00000268122	ENST00000494960		TCGA	RV	KICH	TCGA-KL-8325-01A	RHCG	chr15	90014642	-	C7	chr5	40954982	+
Frame-shit	ENST00000313949	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000313949	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000313949	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371098	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371098	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371075	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371075	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371100	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371100	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371099	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371099	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371102	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371102	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000464624	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000464624	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000306120	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000306120	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371095	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371095	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371085	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371085	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000354359	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000354359	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000265620	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000265620	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000306090	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000306090	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000361654		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000545889		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000302528		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000358808		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000537178		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000540338		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371081	ENST00000536634		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371081	ENST00000540539		TCGA	RV	KICH	TCGA-KN-8435-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000309311	ENST00000360359		TCGA	RV	KICH	TCGA-KM-8639-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000309311	ENST00000535627		TCGA	RV	KICH	TCGA-KM-8639-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000309311	ENST00000470698		TCGA	RV	KICH	TCGA-KM-8639-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000600720	ENST00000360359		TCGA	RV	KICH	TCGA-KM-8639-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000600720	ENST00000535627		TCGA	RV	KICH	TCGA-KM-8639-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000600720	ENST00000470698		TCGA	RV	KICH	TCGA-KM-8639-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
5CDS-3UTR	ENST00000309311	ENST00000355327		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000309311	ENST00000261862		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000357769		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000567838		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000600720	ENST00000355327		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000600720	ENST00000261862		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000600720	ENST00000357769		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000600720	ENST00000567838		TCGA	RV	KICH	TCGA-KL-8342-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000371917		TCGA	RV	KICH	TCGA-KL-8332-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000309311	ENST00000493140		TCGA	RV	KICH	TCGA-KL-8332-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000600720	ENST00000371917		TCGA	RV	KICH	TCGA-KL-8332-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000600720	ENST00000493140		TCGA	RV	KICH	TCGA-KL-8332-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
5CDS-3UTR	ENST00000309311	ENST00000355327		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000309311	ENST00000261862		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000357769		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000567838		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000600720	ENST00000355327		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000600720	ENST00000261862		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000600720	ENST00000357769		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000600720	ENST00000567838		TCGA	RV	KICH	TCGA-KL-8323-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000532456	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000532456	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000539648	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000539648	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000528499	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000528499	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000263574	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000263574	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000345598	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000345598	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000338167	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000338167	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000278756	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000278756	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000543137	ENST00000313164		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000543137	ENST00000494960		TCGA	RV	KICH	TCGA-KO-8403-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
Frame-shit	ENST00000393446	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393446	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393446	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393446	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000265437	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000265437	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000265437	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000265437	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000393451	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393451	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393451	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393451	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000393449	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393449	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393449	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393449	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000323984	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000323984	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000323984	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000323984	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000432298	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000432298	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000432298	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000432298	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000422922	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000422922	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000422922	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000422922	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000487459	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000487459	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000487459	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000487459	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393443	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393443	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393443	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393443	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393447	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393447	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393447	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393447	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393444	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393444	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393444	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393444	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000465133	ENST00000361183		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000465133	ENST00000458284		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000465133	ENST00000490693		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000465133	ENST00000466023		TCGA	RV	KICH	TCGA-KL-8341-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000356462	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000356462	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000400345	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000400345	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
intron-3CDS	ENST00000589054	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
intron-3CDS	ENST00000589054	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000256832	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000256832	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000382850	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000382850	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000256830	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000256830	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
intron-3CDS	ENST00000588516	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
intron-3CDS	ENST00000588516	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000456986	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000456986	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000435432	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000435432	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000357895	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000357895	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000586263	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
Frame-shit	ENST00000586263	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000456173	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000456173	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000431212	ENST00000355285		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
5UTR-3CDS	ENST00000431212	ENST00000578882		TCGA	LD	KICH	TCGA-KL-8329-01A	NEDD4L	chr18	55919286	+	APCDD1	chr18	10468466	+
intron-intron	ENST00000430710	ENST00000267406		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-5UTR	ENST00000430710	ENST00000555436		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-intron	ENST00000399982	ENST00000267406		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-5UTR	ENST00000399982	ENST00000555436		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-intron	ENST00000557364	ENST00000267406		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-5UTR	ENST00000557364	ENST00000555436		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-intron	ENST00000555962	ENST00000267406		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-5UTR	ENST00000555962	ENST00000555436		TCGA	LD	KICH	TCGA-KL-8339-01A	CHD8	chr14	21860710	-	CBLN3	chr14	24900128	-
intron-intron	ENST00000319592	ENST00000397002		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000319592	ENST00000561028		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000319592	ENST00000396997		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000319592	ENST00000560550		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000319592	ENST00000396995		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000381793	ENST00000397002		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000381793	ENST00000561028		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000381793	ENST00000396997		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000381793	ENST00000560550		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000381793	ENST00000396995		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
5UTR-intron	ENST00000381795	ENST00000397002		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
5UTR-intron	ENST00000381795	ENST00000561028		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
5UTR-intron	ENST00000381795	ENST00000396997		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
5UTR-intron	ENST00000381795	ENST00000560550		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
5UTR-intron	ENST00000381795	ENST00000396995		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000295971	ENST00000397002		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000295971	ENST00000561028		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000295971	ENST00000396997		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000295971	ENST00000560550		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000295971	ENST00000396995		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000514014	ENST00000397002		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000514014	ENST00000561028		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000514014	ENST00000396997		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000514014	ENST00000560550		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000514014	ENST00000396995		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000515809	ENST00000397002		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000515809	ENST00000561028		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000515809	ENST00000396997		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000515809	ENST00000560550		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
intron-intron	ENST00000515809	ENST00000396995		TCGA	LD	KICH	TCGA-KL-8339-01A	RBM47	chr4	40517884	-	NRL	chr14	24553954	-
Frame-shit	ENST00000309982	ENST00000220849		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000309982	ENST00000519030		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
5CDS-5UTR	ENST00000309982	ENST00000519517		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000438105	ENST00000220849		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000438105	ENST00000519030		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
5CDS-5UTR	ENST00000438105	ENST00000519517		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000297574	ENST00000220849		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000297574	ENST00000519030		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
5CDS-5UTR	ENST00000297574	ENST00000519517		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000330955	ENST00000220849		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000330955	ENST00000519030		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
5CDS-5UTR	ENST00000330955	ENST00000519517		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000306391	ENST00000220849		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000306391	ENST00000519030		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
5CDS-5UTR	ENST00000306391	ENST00000519517		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000523754	ENST00000220849		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000523754	ENST00000519030		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
intron-5UTR	ENST00000523754	ENST00000519517		TCGA	LD	KICH	TCGA-KL-8341-01A	BAALC	chr8	104153285	+	EIF3E	chr8	109215732	-
5CDS-5UTR	ENST00000543155	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000543155	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000543155	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
3UTR-5UTR	ENST00000542150	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
3UTR-5UTR	ENST00000542150	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
3UTR-5UTR	ENST00000542150	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000229251	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000229251	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000229251	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000539735	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000539735	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000539735	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000538410	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000538410	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000538410	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000534947	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000534947	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000534947	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000534877	ENST00000522356		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000534877	ENST00000508859		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000534877	ENST00000382776		TCGA	LD	KICH	TCGA-KL-8341-01A	COPS7A	chr12	6838615	+	ZDHHC11B	chr5	716980	-
5CDS-5UTR	ENST00000327367	ENST00000284509		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
5CDS-5UTR	ENST00000327367	ENST00000559829		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
5CDS-intron	ENST00000327367	ENST00000558959		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000559092	ENST00000284509		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000559092	ENST00000559829		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-intron	ENST00000559092	ENST00000558959		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000540846	ENST00000284509		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000540846	ENST00000559829		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-intron	ENST00000540846	ENST00000558959		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000439724	ENST00000284509		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000439724	ENST00000559829		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-intron	ENST00000439724	ENST00000558959		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000537194	ENST00000284509		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-5UTR	ENST00000537194	ENST00000559829		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
intron-intron	ENST00000537194	ENST00000558959		TCGA	LD	KICH	TCGA-KL-8341-01A	SMAD3	chr15	67358698	+	ATP8B4	chr15	50399205	-
In-frame	ENST00000267814	ENST00000336787		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
Frame-shit	ENST00000267814	ENST00000396307		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
Frame-shit	ENST00000267814	ENST00000564609		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
In-frame	ENST00000267814	ENST00000569493		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
5CDS-intron	ENST00000267814	ENST00000561545		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000558580	ENST00000336787		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000558580	ENST00000396307		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000558580	ENST00000564609		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000558580	ENST00000569493		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-intron	ENST00000558580	ENST00000561545		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000559562	ENST00000336787		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000559562	ENST00000396307		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000559562	ENST00000564609		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-3CDS	ENST00000559562	ENST00000569493		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
intron-intron	ENST00000559562	ENST00000561545		TCGA	LD	KICH	TCGA-KL-8341-01A	SORD	chr15	45315547	+	RAB27A	chr15	55497903	-
5CDS-intron	ENST00000396328	ENST00000337198		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000396328	ENST00000347770		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000396328	ENST00000522311		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000557913	ENST00000337198		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000557913	ENST00000347770		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000557913	ENST00000522311		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000360509	ENST00000337198		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000360509	ENST00000347770		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000360509	ENST00000522311		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000559418	ENST00000337198		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000559418	ENST00000347770		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
5CDS-intron	ENST00000559418	ENST00000522311		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000567224	ENST00000337198		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000567224	ENST00000347770		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
intron-intron	ENST00000567224	ENST00000522311		TCGA	LD	KICH	TCGA-KL-8341-01A	WDR72	chr15	53957769	-	AZIN1	chr8	103899375	-
In-frame	ENST00000379561	ENST00000261799		TCGA	LD	KICH	TCGA-KM-8443-01A	FOXO1	chr13	41239720	-	PDGFRB	chr5	149499686	-
5CDS-intron	ENST00000379561	ENST00000523456		TCGA	LD	KICH	TCGA-KM-8443-01A	FOXO1	chr13	41239720	-	PDGFRB	chr5	149499686	-
intron-3CDS	ENST00000473775	ENST00000261799		TCGA	LD	KICH	TCGA-KM-8443-01A	FOXO1	chr13	41239720	-	PDGFRB	chr5	149499686	-
intron-intron	ENST00000473775	ENST00000523456		TCGA	LD	KICH	TCGA-KM-8443-01A	FOXO1	chr13	41239720	-	PDGFRB	chr5	149499686	-
5CDS-intron	ENST00000378060	ENST00000378434		TCGA	LD	KICH	TCGA-KM-8443-01A	VPS36	chr13	53013233	-	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000378060	ENST00000345941		TCGA	LD	KICH	TCGA-KM-8443-01A	VPS36	chr13	53013233	-	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000378060	ENST00000465365		TCGA	LD	KICH	TCGA-KM-8443-01A	VPS36	chr13	53013233	-	LPAR6	chr13	48963948	-
5UTR-intron	ENST00000480923	ENST00000378434		TCGA	LD	KICH	TCGA-KM-8443-01A	VPS36	chr13	53013233	-	LPAR6	chr13	48963948	-
5UTR-intron	ENST00000480923	ENST00000345941		TCGA	LD	KICH	TCGA-KM-8443-01A	VPS36	chr13	53013233	-	LPAR6	chr13	48963948	-
5UTR-intron	ENST00000480923	ENST00000465365		TCGA	LD	KICH	TCGA-KM-8443-01A	VPS36	chr13	53013233	-	LPAR6	chr13	48963948	-
5UTR-3CDS	ENST00000560371	ENST00000558850		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000560371	ENST00000559185		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000560371	ENST00000442396		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000560371	ENST00000262236		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-intron	ENST00000560371	ENST00000420933		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000347662	ENST00000558850		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000347662	ENST00000559185		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000347662	ENST00000442396		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000347662	ENST00000262236		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-intron	ENST00000347662	ENST00000420933		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000392745	ENST00000558850		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000392745	ENST00000559185		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000392745	ENST00000442396		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000392745	ENST00000262236		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-intron	ENST00000392745	ENST00000420933		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000539721	ENST00000558850		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000539721	ENST00000559185		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000539721	ENST00000442396		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-3CDS	ENST00000539721	ENST00000262236		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5UTR-intron	ENST00000539721	ENST00000420933		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
intron-3CDS	ENST00000351691	ENST00000558850		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
intron-3CDS	ENST00000351691	ENST00000559185		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
intron-3CDS	ENST00000351691	ENST00000442396		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
intron-3CDS	ENST00000351691	ENST00000262236		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
intron-intron	ENST00000351691	ENST00000420933		TCGA	LD	KICH	TCGA-KN-8425-01A	TRAF3	chr14	103244012	+	ZNF839	chr14	102800891	+
5CDS-5UTR	ENST00000360876	ENST00000312371		TCGA	LD	KICH	TCGA-KN-8427-01A	EIF3B	chr7	2416710	+	AMZ1	chr7	2739868	+
5CDS-5UTR	ENST00000360876	ENST00000407112		TCGA	LD	KICH	TCGA-KN-8427-01A	EIF3B	chr7	2416710	+	AMZ1	chr7	2739868	+
5CDS-intron	ENST00000360876	ENST00000489665		TCGA	LD	KICH	TCGA-KN-8427-01A	EIF3B	chr7	2416710	+	AMZ1	chr7	2739868	+
5CDS-5UTR	ENST00000397011	ENST00000312371		TCGA	LD	KICH	TCGA-KN-8427-01A	EIF3B	chr7	2416710	+	AMZ1	chr7	2739868	+
5CDS-5UTR	ENST00000397011	ENST00000407112		TCGA	LD	KICH	TCGA-KN-8427-01A	EIF3B	chr7	2416710	+	AMZ1	chr7	2739868	+
5CDS-intron	ENST00000397011	ENST00000489665		TCGA	LD	KICH	TCGA-KN-8427-01A	EIF3B	chr7	2416710	+	AMZ1	chr7	2739868	+
Frame-shit	ENST00000264933	ENST00000310581		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000264933	ENST00000296820		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000264933	ENST00000334602		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000264933	ENST00000508104		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000264933	ENST00000522877		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000505221	ENST00000310581		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000505221	ENST00000296820		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000505221	ENST00000334602		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000505221	ENST00000508104		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000505221	ENST00000522877		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000509581	ENST00000310581		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000509581	ENST00000296820		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000509581	ENST00000334602		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000509581	ENST00000508104		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000509581	ENST00000522877		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000507528	ENST00000310581		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000507528	ENST00000296820		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000507528	ENST00000334602		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
Frame-shit	ENST00000507528	ENST00000508104		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000507528	ENST00000522877		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000310581		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000296820		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000334602		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000508104		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
intron-intron	ENST00000511482	ENST00000522877		TCGA	LD	KICH	TCGA-KN-8435-01A	PDCD6	chr5	271936	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000283426	ENST00000338316		TCGA	LD	KICH	TCGA-KN-8435-01A	PLEKHG4B	chr5	113563	+	ADCY2	chr5	7520851	+
intron-intron	ENST00000283426	ENST00000537121		TCGA	LD	KICH	TCGA-KN-8435-01A	PLEKHG4B	chr5	113563	+	ADCY2	chr5	7520851	+
intron-intron	ENST00000283426	ENST00000513693		TCGA	LD	KICH	TCGA-KN-8435-01A	PLEKHG4B	chr5	113563	+	ADCY2	chr5	7520851	+
Frame-shit	ENST00000358595	ENST00000355151		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000397496		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000555345		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000432849		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000553711		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000397505		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000557221		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000358595	ENST00000311892		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000358595	ENST00000556840		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000358595	ENST00000461594		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000358595	ENST00000555536		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000355151		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000397496		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000555345		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000432849		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000553711		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000397505		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000557221		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000354396	ENST00000311892		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000354396	ENST00000556840		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000354396	ENST00000461594		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000354396	ENST00000555536		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000515192	ENST00000355151		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000515192	ENST00000397496		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000515192	ENST00000555345		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000515192	ENST00000432849		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000515192	ENST00000553711		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000515192	ENST00000397505		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000515192	ENST00000557221		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000515192	ENST00000311892		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000515192	ENST00000556840		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000515192	ENST00000461594		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000515192	ENST00000555536		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000355151		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000397496		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000555345		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000432849		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000553711		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000397505		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000557221		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
In-frame	ENST00000505755	ENST00000311892		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
Frame-shit	ENST00000505755	ENST00000556840		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000505755	ENST00000461594		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-intron	ENST00000505755	ENST00000555536		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000355151		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000397496		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000555345		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000432849		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000553711		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000397505		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000557221		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000311892		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-3CDS	ENST00000468970	ENST00000556840		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-intron	ENST00000468970	ENST00000461594		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
intron-intron	ENST00000468970	ENST00000555536		TCGA	LD	KICH	TCGA-KO-8404-01A	ARNT	chr1	150818739	-	MRPL52	chr14	23303381	+
5CDS-3UTR	ENST00000199280	ENST00000318789		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000199280	ENST00000475937		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000493089		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000484350		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000318779		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000491238		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000498215		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000468577		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000199280	ENST00000472382		TCGA	RV	KIRC	TCGA-B0-5691-01A	AQP2	chr12	50352664	+	FOXP1	chr3	71007472	-
Frame-shit	ENST00000303329	ENST00000327536		TCGA	RV	KIRC	TCGA-BP-5169-01A	ARNT2	chr15	80750317	+	TNFAIP8L3	chr15	51350640	-
Frame-shit	ENST00000533983	ENST00000327536		TCGA	RV	KIRC	TCGA-BP-5169-01A	ARNT2	chr15	80750317	+	TNFAIP8L3	chr15	51350640	-
Frame-shit	ENST00000527771	ENST00000327536		TCGA	RV	KIRC	TCGA-BP-5169-01A	ARNT2	chr15	80750317	+	TNFAIP8L3	chr15	51350640	-
intron-3CDS	ENST00000531595	ENST00000327536		TCGA	RV	KIRC	TCGA-BP-5169-01A	ARNT2	chr15	80750317	+	TNFAIP8L3	chr15	51350640	-
intron-3CDS	ENST00000526421	ENST00000280326		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
intron-intron	ENST00000526421	ENST00000503026		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
intron-intron	ENST00000526421	ENST00000515390		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
intron-intron	ENST00000526421	ENST00000515676		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
intron-intron	ENST00000526421	ENST00000506600		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000263464	ENST00000280326		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000263464	ENST00000503026		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000263464	ENST00000515390		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000263464	ENST00000515676		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000263464	ENST00000506600		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000532808	ENST00000280326		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000532808	ENST00000503026		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000532808	ENST00000515390		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000532808	ENST00000515676		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000532808	ENST00000506600		TCGA	RV	KIRC	TCGA-A3-3319-01A	BIRC3	chr11	102208465	+	CCT5	chr5	10250033	+
In-frame	ENST00000394806	ENST00000317147		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
In-frame	ENST00000394806	ENST00000569240		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
In-frame	ENST00000394806	ENST00000441024		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
5CDS-intron	ENST00000394806	ENST00000569732		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
5CDS-intron	ENST00000394806	ENST00000245138		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
In-frame	ENST00000285697	ENST00000317147		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
In-frame	ENST00000285697	ENST00000569240		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
In-frame	ENST00000285697	ENST00000441024		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
5CDS-intron	ENST00000285697	ENST00000569732		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
5CDS-intron	ENST00000285697	ENST00000245138		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
intron-3CDS	ENST00000564250	ENST00000317147		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
intron-3CDS	ENST00000564250	ENST00000569240		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
intron-3CDS	ENST00000564250	ENST00000441024		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
intron-intron	ENST00000564250	ENST00000569732		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
intron-intron	ENST00000564250	ENST00000245138		TCGA	RV	KIRC	TCGA-CJ-4923-01A	C16orf87	chr16	46864996	-	CNOT1	chr16	58581200	-
Frame-shit	ENST00000321617	ENST00000262765		TCGA	RV	KIRC	TCGA-BP-4983-01A	CASKIN2	chr17	73509792	-	QRICH2	chr17	74286158	-
intron-3CDS	ENST00000433559	ENST00000262765		TCGA	RV	KIRC	TCGA-BP-4983-01A	CASKIN2	chr17	73509792	-	QRICH2	chr17	74286158	-
Frame-shit	ENST00000581870	ENST00000262765		TCGA	RV	KIRC	TCGA-BP-4983-01A	CASKIN2	chr17	73509792	-	QRICH2	chr17	74286158	-
intron-3CDS	ENST00000341807	ENST00000336148		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
intron-intron	ENST00000341807	ENST00000519348		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
intron-intron	ENST00000341807	ENST00000297592		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
Frame-shit	ENST00000303045	ENST00000336148		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000303045	ENST00000519348		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000303045	ENST00000297592		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
Frame-shit	ENST00000435777	ENST00000336148		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000435777	ENST00000519348		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
5CDS-intron	ENST00000435777	ENST00000297592		TCGA	RV	KIRC	TCGA-BP-5198-01A	COL22A1	chr8	139889993	-	RAD54B	chr8	95423543	-
In-frame	ENST00000418814	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
Frame-shit	ENST00000418814	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
5CDS-3UTR	ENST00000418814	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
In-frame	ENST00000370479	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
Frame-shit	ENST00000370479	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
5CDS-3UTR	ENST00000370479	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
In-frame	ENST00000505769	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
Frame-shit	ENST00000505769	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
5CDS-3UTR	ENST00000505769	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
In-frame	ENST00000457062	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
Frame-shit	ENST00000457062	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
5CDS-3UTR	ENST00000457062	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
In-frame	ENST00000361499	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
Frame-shit	ENST00000361499	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
5CDS-3UTR	ENST00000361499	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
In-frame	ENST00000505868	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
Frame-shit	ENST00000505868	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
5CDS-3UTR	ENST00000505868	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
intron-3CDS	ENST00000508844	ENST00000388923		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
intron-3CDS	ENST00000508844	ENST00000608326		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
intron-3UTR	ENST00000508844	ENST00000608891		TCGA	RV	KIRC	TCGA-G6-A8L8-01A	FAM135A	chr6	71138122	+	C6orf163	chr6	88074679	+
In-frame	ENST00000285046	ENST00000261667		TCGA	RV	KIRC	TCGA-CJ-4895-01A	FGD5	chr3	14952436	+	KPNA3	chr13	50280508	-
In-frame	ENST00000543601	ENST00000261667		TCGA	RV	KIRC	TCGA-CJ-4895-01A	FGD5	chr3	14952436	+	KPNA3	chr13	50280508	-
3UTR-3CDS	ENST00000476851	ENST00000261667		TCGA	RV	KIRC	TCGA-CJ-4895-01A	FGD5	chr3	14952436	+	KPNA3	chr13	50280508	-
5UTR-3CDS	ENST00000476844	ENST00000478300		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000476844	ENST00000295894		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000476844	ENST00000479198		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000476844	ENST00000478744		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000476844	ENST00000460711		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000476844	ENST00000465156		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000492590	ENST00000478300		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000492590	ENST00000295894		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000492590	ENST00000479198		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000492590	ENST00000478744		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000492590	ENST00000460711		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000492590	ENST00000465156		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000466788	ENST00000478300		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000466788	ENST00000295894		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000466788	ENST00000479198		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000466788	ENST00000478744		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000466788	ENST00000460711		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000466788	ENST00000465156		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000468189	ENST00000478300		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000468189	ENST00000295894		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3CDS	ENST00000468189	ENST00000479198		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000468189	ENST00000478744		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000468189	ENST00000460711		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
5UTR-3UTR	ENST00000468189	ENST00000465156		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000341848	ENST00000478300		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000341848	ENST00000295894		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000341848	ENST00000479198		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000341848	ENST00000478744		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000341848	ENST00000460711		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000341848	ENST00000465156		TCGA	RV	KIRC	TCGA-BP-4969-01A	FHIT	chr3	61186291	-	SYNPR	chr3	63466508	+
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	KIRC	TCGA-BP-4968-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	KIRC	TCGA-BP-4968-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
In-frame	ENST00000368594	ENST00000264474		TCGA	RV	KIRC	TCGA-BP-4774-01A	INPP5A	chr10	134563349	+	CSTA	chr3	122056394	+
Frame-shit	ENST00000368594	ENST00000479204		TCGA	RV	KIRC	TCGA-BP-4774-01A	INPP5A	chr10	134563349	+	CSTA	chr3	122056394	+
In-frame	ENST00000368593	ENST00000264474		TCGA	RV	KIRC	TCGA-BP-4774-01A	INPP5A	chr10	134563349	+	CSTA	chr3	122056394	+
Frame-shit	ENST00000368593	ENST00000479204		TCGA	RV	KIRC	TCGA-BP-4774-01A	INPP5A	chr10	134563349	+	CSTA	chr3	122056394	+
intron-3CDS	ENST00000487614	ENST00000264474		TCGA	RV	KIRC	TCGA-BP-4774-01A	INPP5A	chr10	134563349	+	CSTA	chr3	122056394	+
intron-3CDS	ENST00000487614	ENST00000479204		TCGA	RV	KIRC	TCGA-BP-4774-01A	INPP5A	chr10	134563349	+	CSTA	chr3	122056394	+
Frame-shit	ENST00000302475	ENST00000316549		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
5CDS-intron	ENST00000302475	ENST00000498717		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
5UTR-3CDS	ENST00000514701	ENST00000316549		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
5UTR-intron	ENST00000514701	ENST00000498717		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
intron-3CDS	ENST00000515367	ENST00000316549		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
intron-intron	ENST00000515367	ENST00000498717		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
intron-3CDS	ENST00000408903	ENST00000316549		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
intron-intron	ENST00000408903	ENST00000498717		TCGA	RV	KIRC	TCGA-CJ-4886-01A	MCC	chr5	112630026	-	SLC9A9	chr3	143551063	-
intron-5UTR	ENST00000216181	ENST00000377795		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000216181	ENST00000353334		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000216181	ENST00000524315		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000216181	ENST00000009530		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000475726	ENST00000377795		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000475726	ENST00000353334		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000475726	ENST00000524315		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000475726	ENST00000009530		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000401701	ENST00000377795		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000401701	ENST00000353334		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000401701	ENST00000524315		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-5UTR	ENST00000401701	ENST00000009530		TCGA	RV	KIRC	TCGA-A3-A6NL-01A	MYH9	chr22	36685235	-	CD74	chr5	149792314	-
intron-intron	ENST00000354329	ENST00000381395		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000354329	ENST00000381406		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000354329	ENST00000416167		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-5UTR	ENST00000354329	ENST00000300632		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000354329	ENST00000434045		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000354329	ENST00000381392		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000354329	ENST00000381389		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000354329	ENST00000418738		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000381395		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000381406		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000416167		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-5UTR	ENST00000529578	ENST00000300632		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000434045		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000381392		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000381389		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000529578	ENST00000418738		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000381395		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000381406		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000416167		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-5UTR	ENST00000533112	ENST00000300632		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000434045		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000381392		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000381389		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000533112	ENST00000418738		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000381395		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000381406		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000416167		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-5UTR	ENST00000531253	ENST00000300632		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000434045		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000381392		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000381389		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000531253	ENST00000418738		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000381395		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000381406		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000416167		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-5UTR	ENST00000527372	ENST00000300632		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000434045		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000381392		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000381389		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
intron-intron	ENST00000527372	ENST00000418738		TCGA	RV	KIRC	TCGA-B8-A54K-01A	MYO18A	chr17	27421031	-	IGF2	chr11	2170575	-
5CDS-intron	ENST00000334527	ENST00000563763		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000334527	ENST00000574946		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000334527	ENST00000573634		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000334527	ENST00000317744		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000334527	ENST00000574232		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000334527	ENST00000539421		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000299734	ENST00000563763		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000299734	ENST00000574946		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000299734	ENST00000573634		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000299734	ENST00000317744		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000299734	ENST00000574232		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000299734	ENST00000539421		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000585098	ENST00000563763		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000585098	ENST00000574946		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000585098	ENST00000573634		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000585098	ENST00000317744		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000585098	ENST00000574232		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000585098	ENST00000539421		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000380025	ENST00000563763		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000380025	ENST00000574946		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000380025	ENST00000573634		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000380025	ENST00000317744		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000380025	ENST00000574232		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000380025	ENST00000539421		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000402554	ENST00000563763		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000402554	ENST00000574946		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000402554	ENST00000573634		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000402554	ENST00000317744		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000402554	ENST00000574232		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
5CDS-intron	ENST00000402554	ENST00000539421		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000583066	ENST00000563763		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000583066	ENST00000574946		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000583066	ENST00000573634		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000583066	ENST00000317744		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000583066	ENST00000574232		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
intron-intron	ENST00000583066	ENST00000539421		TCGA	RV	KIRC	TCGA-B0-4694-01A	NDEL1	chr17	8363478	+	WSCD1	chr17	5998422	+
Frame-shit	ENST00000376573	ENST00000369252		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000376573	ENST00000533213		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000376573	ENST00000277895		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000376573	ENST00000369266		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000376573	ENST00000392952		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000376573	ENST00000369253		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-5UTR	ENST00000376573	ENST00000477638		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000545335	ENST00000369252		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000545335	ENST00000533213		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000545335	ENST00000277895		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000545335	ENST00000369266		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000545335	ENST00000392952		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000545335	ENST00000369253		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-5UTR	ENST00000545335	ENST00000477638		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000323883	ENST00000369252		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000323883	ENST00000533213		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
Frame-shit	ENST00000323883	ENST00000277895		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000323883	ENST00000369266		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000323883	ENST00000392952		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-intron	ENST00000323883	ENST00000369253		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5CDS-5UTR	ENST00000323883	ENST00000477638		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-3CDS	ENST00000422321	ENST00000369252		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-3CDS	ENST00000422321	ENST00000533213		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-3CDS	ENST00000422321	ENST00000277895		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-intron	ENST00000422321	ENST00000369266		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-intron	ENST00000422321	ENST00000392952		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-intron	ENST00000422321	ENST00000369253		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-5UTR	ENST00000422321	ENST00000477638		TCGA	RV	KIRC	TCGA-B0-4696-01A	PIP4K2A	chr10	22880558	-	ABLIM1	chr10	116361720	-
5UTR-3CDS	ENST00000379122	ENST00000268130		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-3CDS	ENST00000379122	ENST00000560294		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-intron	ENST00000379122	ENST00000558000		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-intron	ENST00000379122	ENST00000444934		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-3CDS	ENST00000332496	ENST00000268130		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-3CDS	ENST00000332496	ENST00000560294		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-intron	ENST00000332496	ENST00000558000		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
5UTR-intron	ENST00000332496	ENST00000444934		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-3CDS	ENST00000560263	ENST00000268130		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-3CDS	ENST00000560263	ENST00000560294		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-intron	ENST00000560263	ENST00000558000		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-intron	ENST00000560263	ENST00000444934		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-3CDS	ENST00000411539	ENST00000268130		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-3CDS	ENST00000411539	ENST00000560294		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-intron	ENST00000411539	ENST00000558000		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
intron-intron	ENST00000411539	ENST00000444934		TCGA	RV	KIRC	TCGA-B0-4690-01A	SEMA4B	chr15	90728313	+	WDR93	chr15	90255257	+
Frame-shit	ENST00000235345	ENST00000265717		TCGA	RV	KIRC	TCGA-B0-4945-01A	SLC35D1	chr1	67515465	-	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000235345	ENST00000393613		TCGA	RV	KIRC	TCGA-B0-4945-01A	SLC35D1	chr1	67515465	-	PRKAR2B	chr7	106762397	+
Frame-shit	ENST00000506472	ENST00000265717		TCGA	RV	KIRC	TCGA-B0-4945-01A	SLC35D1	chr1	67515465	-	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000506472	ENST00000393613		TCGA	RV	KIRC	TCGA-B0-4945-01A	SLC35D1	chr1	67515465	-	PRKAR2B	chr7	106762397	+
5UTR-3CDS	ENST00000375859	ENST00000358077		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000375859	ENST00000472284		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000375859	ENST00000469640		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000375859	ENST00000408954		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000375859	ENST00000491893		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3UTR	ENST00000375859	ENST00000466188		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000541629	ENST00000358077		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000541629	ENST00000472284		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000541629	ENST00000469640		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000541629	ENST00000408954		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3CDS	ENST00000541629	ENST00000491893		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
5UTR-3UTR	ENST00000541629	ENST00000466188		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000469017	ENST00000358077		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000469017	ENST00000472284		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000469017	ENST00000469640		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000469017	ENST00000408954		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000469017	ENST00000491893		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
3UTR-3UTR	ENST00000469017	ENST00000466188		TCGA	RV	KIRC	TCGA-B8-A8YJ-01A	SPIN1	chr9	91003453	+	DAPK1	chr9	90283512	+
Frame-shit	ENST00000287652	ENST00000402198		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000287652	ENST00000402466		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000287652	ENST00000406341		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000287652	ENST00000407969		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000287652	ENST00000302463		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
5CDS-3UTR	ENST00000287652	ENST00000488236		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000448281	ENST00000402198		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000448281	ENST00000402466		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000448281	ENST00000406341		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000448281	ENST00000407969		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
Frame-shit	ENST00000448281	ENST00000302463		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
5CDS-3UTR	ENST00000448281	ENST00000488236		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-3CDS	ENST00000496355	ENST00000402198		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-3CDS	ENST00000496355	ENST00000402466		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-3CDS	ENST00000496355	ENST00000406341		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-3CDS	ENST00000496355	ENST00000407969		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-3CDS	ENST00000496355	ENST00000302463		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-3UTR	ENST00000496355	ENST00000488236		TCGA	RV	KIRC	TCGA-B0-5081-01A	TATDN2	chr3	10312699	+	SETD5	chr3	9506109	+
intron-intron	ENST00000346128	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000346128	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000346128	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000346128	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000346128	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000400011	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000400011	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000400011	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000400011	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000400011	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000356107	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000356107	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000356107	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000356107	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000356107	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000545208	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000545208	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000545208	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000545208	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000545208	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495972	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495972	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495972	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495972	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495972	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3374-01A	TJP1	chr15	29992356	-	TYK2	chr19	10491352	-
intron-intron	ENST00000548589	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548589	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548589	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548589	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548589	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000552699	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000552699	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000552699	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000552699	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000552699	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000267115	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000267115	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000267115	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000267115	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000267115	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549385	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549385	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549385	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549385	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549385	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000423828	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000423828	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000423828	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000423828	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000423828	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395006	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395006	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395006	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395006	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395006	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000547798	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000547798	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000547798	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000547798	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
intron-intron	ENST00000547798	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3362-01A	TMBIM6	chr12	50158717	+	TYK2	chr19	10491352	-
Frame-shit	ENST00000476941	ENST00000295874		TCGA	RV	KIRC	TCGA-BP-4963-01A	TRPC1	chr3	142467302	+	PTPRG	chr3	61734552	+
Frame-shit	ENST00000476941	ENST00000474889		TCGA	RV	KIRC	TCGA-BP-4963-01A	TRPC1	chr3	142467302	+	PTPRG	chr3	61734552	+
5CDS-3UTR	ENST00000476941	ENST00000495879		TCGA	RV	KIRC	TCGA-BP-4963-01A	TRPC1	chr3	142467302	+	PTPRG	chr3	61734552	+
Frame-shit	ENST00000273482	ENST00000295874		TCGA	RV	KIRC	TCGA-BP-4963-01A	TRPC1	chr3	142467302	+	PTPRG	chr3	61734552	+
Frame-shit	ENST00000273482	ENST00000474889		TCGA	RV	KIRC	TCGA-BP-4963-01A	TRPC1	chr3	142467302	+	PTPRG	chr3	61734552	+
5CDS-3UTR	ENST00000273482	ENST00000495879		TCGA	RV	KIRC	TCGA-BP-4963-01A	TRPC1	chr3	142467302	+	PTPRG	chr3	61734552	+
Frame-shit	ENST00000293218	ENST00000413366		TCGA	RV	KIRC	TCGA-BP-4983-01A	UNK	chr17	73781065	+	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000293218	ENST00000583361		TCGA	RV	KIRC	TCGA-BP-4983-01A	UNK	chr17	73781065	+	PRKCA	chr17	64492319	+
Frame-shit	ENST00000589666	ENST00000413366		TCGA	RV	KIRC	TCGA-BP-4983-01A	UNK	chr17	73781065	+	PRKCA	chr17	64492319	+
5CDS-intron	ENST00000589666	ENST00000583361		TCGA	RV	KIRC	TCGA-BP-4983-01A	UNK	chr17	73781065	+	PRKCA	chr17	64492319	+
5UTR-3UTR	ENST00000378308	ENST00000325250		TCGA	RV	KIRC	TCGA-BP-4349-01A	USP9X	chrX	40945362	+	MAGEB18	chrX	26158297	+
5UTR-3UTR	ENST00000324545	ENST00000325250		TCGA	RV	KIRC	TCGA-BP-4349-01A	USP9X	chrX	40945362	+	MAGEB18	chrX	26158297	+
Frame-shit	ENST00000478253	ENST00000490882		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000429972		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000295956		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000358537		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000357272		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000348383		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000493452		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000419752		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
5CDS-intron	ENST00000478253	ENST00000484981		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000490882		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000429972		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000295956		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000358537		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000357272		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000348383		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000493452		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000419752		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
5CDS-intron	ENST00000295962	ENST00000484981		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000490882		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000429972		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000295956		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000358537		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000357272		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000348383		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000493452		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000419752		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-intron	ENST00000480457	ENST00000484981		TCGA	RV	KIRC	TCGA-AS-3777-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000283558	ENST00000356049		TCGA	RV	KIRC	TCGA-BP-5173-01A	ATP11A	chr13	113344769	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000375630	ENST00000356049		TCGA	RV	KIRC	TCGA-BP-5173-01A	ATP11A	chr13	113344769	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000487903	ENST00000356049		TCGA	RV	KIRC	TCGA-BP-5173-01A	ATP11A	chr13	113344769	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000375645	ENST00000356049		TCGA	RV	KIRC	TCGA-BP-5173-01A	ATP11A	chr13	113344769	+	C13orf35	chr13	113337588	+
intron-3CDS	ENST00000419448	ENST00000356049		TCGA	RV	KIRC	TCGA-BP-5173-01A	ATP11A	chr13	113344769	+	C13orf35	chr13	113337588	+
In-frame	ENST00000370187	ENST00000299163		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
5CDS-3UTR	ENST00000370187	ENST00000528044		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
In-frame	ENST00000393441	ENST00000299163		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
5CDS-3UTR	ENST00000393441	ENST00000528044		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
intron-3CDS	ENST00000408038	ENST00000299163		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
intron-3UTR	ENST00000408038	ENST00000528044		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
intron-3CDS	ENST00000493877	ENST00000299163		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
intron-3UTR	ENST00000493877	ENST00000528044		TCGA	RV	KIRC	TCGA-BP-5202-01A	BTRC	chr10	103190209	+	HIF1AN	chr10	102296168	+
5CDS-intron	ENST00000280527	ENST00000236957		TCGA	RV	KIRC	TCGA-BP-4774-01A	CRIM1	chr2	36669878	+	EEF1B2	chr2	207024637	+
5CDS-5UTR	ENST00000280527	ENST00000392221		TCGA	RV	KIRC	TCGA-BP-4774-01A	CRIM1	chr2	36669878	+	EEF1B2	chr2	207024637	+
5CDS-5UTR	ENST00000280527	ENST00000392222		TCGA	RV	KIRC	TCGA-BP-4774-01A	CRIM1	chr2	36669878	+	EEF1B2	chr2	207024637	+
intron-intron	ENST00000473403	ENST00000236957		TCGA	RV	KIRC	TCGA-BP-4774-01A	CRIM1	chr2	36669878	+	EEF1B2	chr2	207024637	+
intron-5UTR	ENST00000473403	ENST00000392221		TCGA	RV	KIRC	TCGA-BP-4774-01A	CRIM1	chr2	36669878	+	EEF1B2	chr2	207024637	+
intron-5UTR	ENST00000473403	ENST00000392222		TCGA	RV	KIRC	TCGA-BP-4774-01A	CRIM1	chr2	36669878	+	EEF1B2	chr2	207024637	+
5CDS-5UTR	ENST00000302243	ENST00000314423		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-5UTR	ENST00000302243	ENST00000352319		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-5UTR	ENST00000302243	ENST00000563094		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-intron	ENST00000302243	ENST00000569615		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
3UTR-5UTR	ENST00000562509	ENST00000314423		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
3UTR-5UTR	ENST00000562509	ENST00000352319		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
3UTR-5UTR	ENST00000562509	ENST00000563094		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
3UTR-intron	ENST00000562509	ENST00000569615		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-5UTR	ENST00000417604	ENST00000314423		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-5UTR	ENST00000417604	ENST00000352319		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-5UTR	ENST00000417604	ENST00000563094		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
5CDS-intron	ENST00000417604	ENST00000569615		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
intron-5UTR	ENST00000443119	ENST00000314423		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
intron-5UTR	ENST00000443119	ENST00000352319		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
intron-5UTR	ENST00000443119	ENST00000563094		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
intron-intron	ENST00000443119	ENST00000569615		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19A	chr16	70390150	+	CIRH1A	chr16	69167361	+
intron-3CDS	ENST00000202028	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000202028	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000202028	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373950	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373950	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000373950	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000441639	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000441639	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000441639	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
Frame-shit	ENST00000373946	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
Frame-shit	ENST00000373946	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
5CDS-3UTR	ENST00000373946	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000338074	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000338074	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000338074	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373941	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373941	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000373941	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000479336	ENST00000374012		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000479336	ENST00000439301		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000479336	ENST00000481202		TCGA	RV	KIRC	TCGA-B0-4811-01A	EPB41L1	chr20	34713449	+	PHF20	chr20	34430495	+
In-frame	ENST00000375915	ENST00000252936		TCGA	RV	KIRC	TCGA-B0-4688-01A	FAM155A	chr13	108518030	-	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000375915	ENST00000417178		TCGA	RV	KIRC	TCGA-B0-4688-01A	FAM155A	chr13	108518030	-	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000375915	ENST00000368563		TCGA	RV	KIRC	TCGA-B0-4688-01A	FAM155A	chr13	108518030	-	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000375915	ENST00000368562		TCGA	RV	KIRC	TCGA-B0-4688-01A	FAM155A	chr13	108518030	-	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000375915	ENST00000543663		TCGA	RV	KIRC	TCGA-B0-4688-01A	FAM155A	chr13	108518030	-	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000375915	ENST00000470829		TCGA	RV	KIRC	TCGA-B0-4688-01A	FAM155A	chr13	108518030	-	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000380502	ENST00000494753		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000411567		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000276914		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000380465		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000380464		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000380496	ENST00000494753		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380496	ENST00000411567		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380496	ENST00000276914		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380496	ENST00000380465		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380496	ENST00000380464		TCGA	RV	KIRC	TCGA-B0-4821-01A	HAUS6	chr9	19070217	-	PLIN2	chr9	19131269	-
5UTR-3CDS	ENST00000429149	ENST00000261783		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
5UTR-3UTR	ENST00000429149	ENST00000556491		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
intron-3CDS	ENST00000569641	ENST00000261783		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
intron-3UTR	ENST00000569641	ENST00000556491		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
intron-3CDS	ENST00000288098	ENST00000261783		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
intron-3UTR	ENST00000288098	ENST00000556491		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
intron-3CDS	ENST00000566361	ENST00000261783		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
intron-3UTR	ENST00000566361	ENST00000556491		TCGA	RV	KIRC	TCGA-B2-4098-01A	IL34	chr16	70613952	+	ARG2	chr14	68087611	+
Frame-shit	ENST00000535193	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000535193	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000535193	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000535193	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
Frame-shit	ENST00000543771	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000543771	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000543771	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000543771	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
Frame-shit	ENST00000381306	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000381306	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000381306	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000381306	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
Frame-shit	ENST00000381309	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000381309	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000381309	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000381309	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-3CDS	ENST00000442236	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-intron	ENST00000442236	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-intron	ENST00000442236	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-intron	ENST00000442236	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
3UTR-3CDS	ENST00000489243	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
3UTR-intron	ENST00000489243	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
3UTR-intron	ENST00000489243	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
3UTR-intron	ENST00000489243	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5UTR-3CDS	ENST00000536108	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5UTR-intron	ENST00000536108	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5UTR-intron	ENST00000536108	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5UTR-intron	ENST00000536108	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-3CDS	ENST00000428870	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-intron	ENST00000428870	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-intron	ENST00000428870	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
intron-intron	ENST00000428870	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
Frame-shit	ENST00000401787	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000401787	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000401787	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-intron	ENST00000401787	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	KDM4C	chr9	6805774	+	RFX3	chr9	3225280	-
5CDS-5UTR	ENST00000273261	ENST00000523719		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-5UTR	ENST00000273261	ENST00000276609		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-5UTR	ENST00000273261	ENST00000309536		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-intron	ENST00000273261	ENST00000520249		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-5UTR	ENST00000383703	ENST00000523719		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-5UTR	ENST00000383703	ENST00000276609		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-5UTR	ENST00000383703	ENST00000309536		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5CDS-intron	ENST00000383703	ENST00000520249		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5UTR-5UTR	ENST00000496559	ENST00000523719		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5UTR-5UTR	ENST00000496559	ENST00000276609		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5UTR-5UTR	ENST00000496559	ENST00000309536		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
5UTR-intron	ENST00000496559	ENST00000520249		TCGA	RV	KIRC	TCGA-B0-5713-01A	LRIG1	chr3	66444464	-	SLC26A7	chr8	92261767	+
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRC	TCGA-B0-5705-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
5CDS-5UTR	ENST00000357214	ENST00000487451		TCGA	RV	KIRC	TCGA-B0-5705-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRC	TCGA-B0-5705-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
intron-5UTR	ENST00000468598	ENST00000487451		TCGA	RV	KIRC	TCGA-B0-5705-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
5UTR-3CDS	ENST00000491545	ENST00000268933		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-intron	ENST00000491545	ENST00000515028		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-intron	ENST00000491545	ENST00000541226		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-intron	ENST00000491545	ENST00000537145		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
In-frame	ENST00000435456	ENST00000268933		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5CDS-intron	ENST00000435456	ENST00000515028		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5CDS-intron	ENST00000435456	ENST00000541226		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5CDS-intron	ENST00000435456	ENST00000537145		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
intron-3CDS	ENST00000402844	ENST00000268933		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
intron-intron	ENST00000402844	ENST00000515028		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
intron-intron	ENST00000402844	ENST00000541226		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
intron-intron	ENST00000402844	ENST00000537145		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-3CDS	ENST00000544408	ENST00000268933		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-intron	ENST00000544408	ENST00000515028		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-intron	ENST00000544408	ENST00000541226		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5UTR-intron	ENST00000544408	ENST00000537145		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
In-frame	ENST00000542412	ENST00000268933		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5CDS-intron	ENST00000542412	ENST00000515028		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5CDS-intron	ENST00000542412	ENST00000541226		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
5CDS-intron	ENST00000542412	ENST00000537145		TCGA	RV	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616245	+
Frame-shit	ENST00000354883	ENST00000478136		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
Frame-shit	ENST00000354883	ENST00000496687		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
5CDS-intron	ENST00000354883	ENST00000491017		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
Frame-shit	ENST00000336733	ENST00000478136		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
Frame-shit	ENST00000336733	ENST00000496687		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
5CDS-intron	ENST00000336733	ENST00000491017		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
3UTR-3CDS	ENST00000536651	ENST00000478136		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
3UTR-3CDS	ENST00000536651	ENST00000496687		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
3UTR-intron	ENST00000536651	ENST00000491017		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
Frame-shit	ENST00000413054	ENST00000478136		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
Frame-shit	ENST00000413054	ENST00000496687		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
5CDS-intron	ENST00000413054	ENST00000491017		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
3UTR-3CDS	ENST00000484768	ENST00000478136		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
3UTR-3CDS	ENST00000484768	ENST00000496687		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
3UTR-intron	ENST00000484768	ENST00000491017		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC25A26	chr3	66396832	+	FAM19A1	chr3	68587907	+
Frame-shit	ENST00000280871	ENST00000310581		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
Frame-shit	ENST00000280871	ENST00000296820		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
Frame-shit	ENST00000280871	ENST00000334602		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
Frame-shit	ENST00000280871	ENST00000508104		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000280871	ENST00000522877		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000380858	ENST00000310581		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000380858	ENST00000296820		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000380858	ENST00000334602		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000380858	ENST00000508104		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
intron-intron	ENST00000380858	ENST00000522877		TCGA	RV	KIRC	TCGA-CJ-5680-01A	SLC2A13	chr12	40345059	-	TERT	chr5	1282739	-
Frame-shit	ENST00000520701	ENST00000358746		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
5CDS-intron	ENST00000520701	ENST00000515176		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
Frame-shit	ENST00000243389	ENST00000358746		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
5CDS-intron	ENST00000243389	ENST00000515176		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
intron-3CDS	ENST00000429484	ENST00000358746		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
intron-intron	ENST00000429484	ENST00000515176		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
Frame-shit	ENST00000521925	ENST00000358746		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
5CDS-intron	ENST00000521925	ENST00000515176		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
intron-3CDS	ENST00000521351	ENST00000358746		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
intron-intron	ENST00000521351	ENST00000515176		TCGA	RV	KIRC	TCGA-B8-4143-01A	SLC36A1	chr5	150859050	+	TTC37	chr5	94803693	-
5UTR-intron	ENST00000327473	ENST00000282469		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
5UTR-intron	ENST00000327473	ENST00000509059		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
5UTR-intron	ENST00000327473	ENST00000356031		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
5UTR-intron	ENST00000327473	ENST00000440995		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
5UTR-intron	ENST00000327473	ENST00000303129		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
3UTR-intron	ENST00000598107	ENST00000282469		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
3UTR-intron	ENST00000598107	ENST00000509059		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
3UTR-intron	ENST00000598107	ENST00000356031		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
3UTR-intron	ENST00000598107	ENST00000440995		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
3UTR-intron	ENST00000598107	ENST00000303129		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
intron-intron	ENST00000536716	ENST00000282469		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
intron-intron	ENST00000536716	ENST00000509059		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
intron-intron	ENST00000536716	ENST00000356031		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
intron-intron	ENST00000536716	ENST00000440995		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
intron-intron	ENST00000536716	ENST00000303129		TCGA	RV	KIRC	TCGA-B4-5377-01A	TNFAIP8L1	chr19	4639641	+	SPEF2	chr5	35691139	+
5UTR-5UTR	ENST00000541110	ENST00000377136		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000541110	ENST00000377133		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000541110	ENST00000442615		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000377132		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000396792		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000473369		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000453467		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000454071		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000552011		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000440557		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000416582		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000493309		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000456657		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000436167		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000551060		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000440672		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000444920		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000487930		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000443407		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000412956		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000546418		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000421808		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000431658		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000492722		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000400694		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000400693		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000546570		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000383550		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000400689		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000490560		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000400714		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000400713		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000548244		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000383644		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000400712		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000461453		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000435958		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000458051		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000552129		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000415581		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000438840		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000494944		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000439879		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000449826		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000550783		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000446161		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000418376		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000541110	ENST00000498404		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000372917	ENST00000377136		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000372917	ENST00000377133		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000372917	ENST00000442615		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000377132		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000396792		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000473369		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000453467		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000454071		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000552011		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000440557		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000416582		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000493309		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000456657		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000436167		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000551060		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000440672		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000444920		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000487930		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000443407		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000412956		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000546418		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000421808		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000431658		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000492722		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000400694		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000400693		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000546570		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000383550		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000400689		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000490560		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000400714		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000400713		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000548244		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000383644		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000400712		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000461453		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000435958		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000458051		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000552129		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000415581		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000438840		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000494944		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000439879		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000449826		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000550783		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000446161		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000418376		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372917	ENST00000498404		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000372922	ENST00000377136		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000372922	ENST00000377133		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000372922	ENST00000442615		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000377132		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000396792		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000473369		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000453467		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000454071		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000552011		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000440557		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000416582		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000493309		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000456657		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000436167		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000551060		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000440672		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000444920		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000487930		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000443407		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000412956		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000546418		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000421808		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000431658		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000492722		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000400694		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000400693		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000546570		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000383550		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000400689		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000490560		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000400714		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000400713		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000548244		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000383644		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000400712		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000461453		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000435958		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000458051		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000552129		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000415581		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000438840		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000494944		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000439879		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000449826		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000550783		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000446161		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000418376		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000372922	ENST00000498404		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000340840	ENST00000377136		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000340840	ENST00000377133		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000340840	ENST00000442615		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000377132		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000396792		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000473369		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000453467		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000454071		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000552011		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000440557		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000416582		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000493309		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000456657		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000436167		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000551060		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000440672		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000444920		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000487930		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000443407		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000412956		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000546418		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000421808		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000431658		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000492722		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000400694		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000400693		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000546570		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000383550		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000400689		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000490560		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000400714		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000400713		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000548244		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000383644		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000400712		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000461453		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000435958		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000458051		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000552129		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000415581		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000438840		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000494944		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000439879		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000449826		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000550783		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000446161		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000418376		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000340840	ENST00000498404		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000354325	ENST00000377136		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000354325	ENST00000377133		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-5UTR	ENST00000354325	ENST00000442615		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000377132		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000396792		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000473369		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000453467		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000454071		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000552011		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000440557		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000416582		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000493309		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000456657		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000436167		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000551060		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000440672		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000444920		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000487930		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000443407		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000412956		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000546418		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000421808		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000431658		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000492722		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000400694		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000400693		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000546570		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000383550		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000400689		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000490560		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000400714		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000400713		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000548244		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000383644		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000400712		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000461453		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000435958		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000458051		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000552129		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000415581		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000438840		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000494944		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000439879		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000449826		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000550783		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000446161		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000418376		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
5UTR-intron	ENST00000354325	ENST00000498404		TCGA	RV	KIRC	TCGA-A3-3313-01A	TRERF1	chr6	42418915	-	OR2H1	chr6	29426231	+
intron-intron	ENST00000498443	ENST00000233057		TCGA	RV	KIRC	TCGA-B0-5691-01A	TSPAN1	chr1	46651630	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000498443	ENST00000395127		TCGA	RV	KIRC	TCGA-B0-5691-01A	TSPAN1	chr1	46651630	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000498443	ENST00000405334		TCGA	RV	KIRC	TCGA-B0-5691-01A	TSPAN1	chr1	46651630	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000372003	ENST00000233057		TCGA	RV	KIRC	TCGA-B0-5691-01A	TSPAN1	chr1	46651630	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000372003	ENST00000395127		TCGA	RV	KIRC	TCGA-B0-5691-01A	TSPAN1	chr1	46651630	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000372003	ENST00000405334		TCGA	RV	KIRC	TCGA-B0-5691-01A	TSPAN1	chr1	46651630	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000372067	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372067	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000417285	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000417285	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000324450	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000324450	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000413642	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000413642	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000372055	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000372055	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000482630	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000482630	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000425836	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000425836	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372064	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372064	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372077	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372077	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000520948	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000520948	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000523873	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000523873	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000523950	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000523950	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000518689	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000518689	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000523125	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000523125	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000457104	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000457104	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000518824	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000518824	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000230480	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
intron-intron	ENST00000230480	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3313-01A	VEGFA	chr6	43754224	+	DDX27	chr20	47849303	+
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000462705	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000393785	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000481632	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000471418	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000357258	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000464560	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000488663	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000474710	ENST00000498645		TCGA	RV	KIRC	TCGA-B0-5096-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115529261	-
Frame-shit	ENST00000238855	ENST00000396671		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238855	ENST00000356447		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238855	ENST00000416420		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238855	ENST00000280696		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000422803	ENST00000396671		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000422803	ENST00000356447		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000422803	ENST00000416420		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000422803	ENST00000280696		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238856	ENST00000396671		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238856	ENST00000356447		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238856	ENST00000416420		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000238856	ENST00000280696		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409933	ENST00000396671		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409933	ENST00000356447		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409933	ENST00000416420		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409933	ENST00000280696		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409183	ENST00000396671		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409183	ENST00000356447		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409183	ENST00000416420		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000409183	ENST00000280696		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
In-frame	ENST00000487769	ENST00000396671		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
In-frame	ENST00000487769	ENST00000356447		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
In-frame	ENST00000487769	ENST00000416420		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
In-frame	ENST00000487769	ENST00000280696		TCGA	RV	KIRC	TCGA-CJ-5681-01A	AFTPH	chr2	64812679	+	THRB	chr3	24193981	-
Frame-shit	ENST00000532219	ENST00000324896		TCGA	RV	KIRC	TCGA-A3-3317-01A	ANKHD1-EIF4EBP3	chr5	139929154	+	GTF2I	chr7	74072011	+
5CDS-intron	ENST00000532219	ENST00000353920		TCGA	RV	KIRC	TCGA-A3-3317-01A	ANKHD1-EIF4EBP3	chr5	139929154	+	GTF2I	chr7	74072011	+
5CDS-intron	ENST00000532219	ENST00000346152		TCGA	RV	KIRC	TCGA-A3-3317-01A	ANKHD1-EIF4EBP3	chr5	139929154	+	GTF2I	chr7	74072011	+
5CDS-intron	ENST00000532219	ENST00000416070		TCGA	RV	KIRC	TCGA-A3-3317-01A	ANKHD1-EIF4EBP3	chr5	139929154	+	GTF2I	chr7	74072011	+
5CDS-intron	ENST00000532219	ENST00000443166		TCGA	RV	KIRC	TCGA-A3-3317-01A	ANKHD1-EIF4EBP3	chr5	139929154	+	GTF2I	chr7	74072011	+
5CDS-intron	ENST00000532219	ENST00000438130		TCGA	RV	KIRC	TCGA-A3-3317-01A	ANKHD1-EIF4EBP3	chr5	139929154	+	GTF2I	chr7	74072011	+
In-frame	ENST00000255194	ENST00000447998		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000255194	ENST00000424236		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000255194	ENST00000446090		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000255194	ENST00000521093		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
In-frame	ENST00000519295	ENST00000447998		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000519295	ENST00000424236		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000519295	ENST00000446090		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000519295	ENST00000521093		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
intron-3CDS	ENST00000523204	ENST00000447998		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
intron-5UTR	ENST00000523204	ENST00000424236		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
intron-5UTR	ENST00000523204	ENST00000446090		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
intron-5UTR	ENST00000523204	ENST00000521093		TCGA	RV	KIRC	TCGA-BP-4986-01A	AP3B1	chr5	77423854	-	DCTN4	chr5	150136049	-
5CDS-5UTR	ENST00000303329	ENST00000395032		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000303329	ENST00000358152		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000303329	ENST00000278865		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-intron	ENST00000303329	ENST00000526199		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-intron	ENST00000303329	ENST00000534744		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000533983	ENST00000395032		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000533983	ENST00000358152		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000533983	ENST00000278865		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-intron	ENST00000533983	ENST00000526199		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-intron	ENST00000533983	ENST00000534744		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000527771	ENST00000395032		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000527771	ENST00000358152		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-5UTR	ENST00000527771	ENST00000278865		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-intron	ENST00000527771	ENST00000526199		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
5CDS-intron	ENST00000527771	ENST00000534744		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
intron-5UTR	ENST00000531595	ENST00000395032		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
intron-5UTR	ENST00000531595	ENST00000358152		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
intron-5UTR	ENST00000531595	ENST00000278865		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
intron-intron	ENST00000531595	ENST00000526199		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
intron-intron	ENST00000531595	ENST00000534744		TCGA	RV	KIRC	TCGA-B0-4688-01A	ARNT2	chr15	80873745	+	MS4A3	chr11	59834424	+
Frame-shit	ENST00000358791	ENST00000589222		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358791	ENST00000407086		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358791	ENST00000390652		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358791	ENST00000408905		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358791	ENST00000588462		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358791	ENST00000585744		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000358791	ENST00000588874		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000358791	ENST00000585812		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000589222		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000407086		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000390652		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000408905		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000588462		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000585744		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000262591	ENST00000588874		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000262591	ENST00000585812		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000589222		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000407086		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000390652		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000408905		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000588462		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000585744		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000371608	ENST00000588874		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000371608	ENST00000585812		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000589222		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000407086		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000390652		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000408905		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000588462		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000585744		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000609336	ENST00000588874		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000609336	ENST00000585812		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000589222		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000407086		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000390652		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000408905		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000588462		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000585744		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000485049	ENST00000588874		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
3UTR-3UTR	ENST00000485049	ENST00000585812		TCGA	RV	KIRC	TCGA-CJ-5683-01A	BCAS4	chr20	49411710	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000373886	ENST00000373910		TCGA	RV	KIRC	TCGA-CJ-4918-01A	BICC1	chr10	60273093	+	UBE2D1	chr10	60121098	+
intron-3CDS	ENST00000263103	ENST00000373910		TCGA	RV	KIRC	TCGA-CJ-4918-01A	BICC1	chr10	60273093	+	UBE2D1	chr10	60121098	+
intron-3CDS	ENST00000476684	ENST00000373910		TCGA	RV	KIRC	TCGA-CJ-4918-01A	BICC1	chr10	60273093	+	UBE2D1	chr10	60121098	+
In-frame	ENST00000378863	ENST00000379540		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000378863	ENST00000379521		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000378863	ENST00000318524		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
5CDS-intron	ENST00000378863	ENST00000463421		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000452938	ENST00000379540		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000452938	ENST00000379521		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000452938	ENST00000318524		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
5CDS-intron	ENST00000452938	ENST00000463421		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000378868	ENST00000379540		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000378868	ENST00000379521		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
In-frame	ENST00000378868	ENST00000318524		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
5CDS-intron	ENST00000378868	ENST00000463421		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
intron-3CDS	ENST00000464921	ENST00000379540		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
intron-3CDS	ENST00000464921	ENST00000379521		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
intron-3CDS	ENST00000464921	ENST00000318524		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
intron-intron	ENST00000464921	ENST00000463421		TCGA	RV	KIRC	TCGA-BP-5199-01A	CRLS1	chr20	5996136	+	NFX1	chr9	33328579	+
intron-3CDS	ENST00000563392	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-intron	ENST00000563392	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000570055	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-intron	ENST00000570055	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000563206	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-intron	ENST00000563206	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000451014	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-intron	ENST00000451014	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000568625	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
intron-intron	ENST00000568625	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
In-frame	ENST00000288071	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000288071	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
5UTR-3CDS	ENST00000393657	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
5UTR-intron	ENST00000393657	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
In-frame	ENST00000355992	ENST00000304372		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000355992	ENST00000562860		TCGA	RV	KIRC	TCGA-BP-5192-01A	DDX19B	chr16	70333257	+	KCTD19	chr16	67354788	-
In-frame	ENST00000309311	ENST00000263593		TCGA	RV	KIRC	TCGA-CW-5581-01A	EEF2	chr19	3976055	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000309311	ENST00000545756		TCGA	RV	KIRC	TCGA-CW-5581-01A	EEF2	chr19	3976055	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000309311	ENST00000525730		TCGA	RV	KIRC	TCGA-CW-5581-01A	EEF2	chr19	3976055	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000600720	ENST00000263593		TCGA	RV	KIRC	TCGA-CW-5581-01A	EEF2	chr19	3976055	-	SIAE	chr11	124543777	-
intron-intron	ENST00000600720	ENST00000545756		TCGA	RV	KIRC	TCGA-CW-5581-01A	EEF2	chr19	3976055	-	SIAE	chr11	124543777	-
intron-intron	ENST00000600720	ENST00000525730		TCGA	RV	KIRC	TCGA-CW-5581-01A	EEF2	chr19	3976055	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000370314	ENST00000355827		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000370314	ENST00000373054		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000370314	ENST00000373061		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000370314	ENST00000373049		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000370314	ENST00000324765		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000535043	ENST00000355827		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000535043	ENST00000373054		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000535043	ENST00000373061		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000535043	ENST00000373049		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
Frame-shit	ENST00000535043	ENST00000324765		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
intron-3CDS	ENST00000497894	ENST00000355827		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
intron-3CDS	ENST00000497894	ENST00000373054		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
intron-3CDS	ENST00000497894	ENST00000373061		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
intron-3CDS	ENST00000497894	ENST00000373049		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
intron-3CDS	ENST00000497894	ENST00000324765		TCGA	RV	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96684649	+
5CDS-5UTR	ENST00000367120	ENST00000219151		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
5CDS-5UTR	ENST00000367120	ENST00000307493		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
5CDS-5UTR	ENST00000367120	ENST00000520010		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
5CDS-5UTR	ENST00000537984	ENST00000219151		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
5CDS-5UTR	ENST00000537984	ENST00000307493		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
5CDS-5UTR	ENST00000537984	ENST00000520010		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
intron-5UTR	ENST00000463979	ENST00000219151		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
intron-5UTR	ENST00000463979	ENST00000307493		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
intron-5UTR	ENST00000463979	ENST00000520010		TCGA	RV	KIRC	TCGA-BP-4787-01A	IKBKE	chr1	206667324	+	ACSM1	chr16	20651906	-
Frame-shit	ENST00000296755	ENST00000295966		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
Frame-shit	ENST00000296755	ENST00000482387		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000296755	ENST00000472469		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000296755	ENST00000491845		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000296755	ENST00000478363		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
3UTR-3CDS	ENST00000504183	ENST00000295966		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
3UTR-3CDS	ENST00000504183	ENST00000482387		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
3UTR-intron	ENST00000504183	ENST00000472469		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
3UTR-intron	ENST00000504183	ENST00000491845		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
3UTR-intron	ENST00000504183	ENST00000478363		TCGA	RV	KIRC	TCGA-BP-4961-01A	MAP1B	chr5	71411626	+	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000307102	ENST00000437600		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000292538		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000393824		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000547394		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000360264		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000425244		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000292535		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000549414		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000556210		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000550008		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000546411		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
5CDS-intron	ENST00000307102	ENST00000560541		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000437600		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000292538		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000393824		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000547394		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000360264		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000425244		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000292535		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000549414		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000556210		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000550008		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000546411		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-intron	ENST00000566326	ENST00000560541		TCGA	RV	KIRC	TCGA-BP-5192-01A	MAP2K1	chr15	66679765	+	CUX1	chr7	101870647	+
intron-3CDS	ENST00000360772	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000360772	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000360772	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000359169	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000359169	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000359169	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000360304	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000360304	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000360304	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000418370	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000418370	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000418370	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000578202	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000578202	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000578202	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000354792	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000354792	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000354792	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000346322	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000346322	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000346322	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000583087	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000583087	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000583087	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000475616	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000475616	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000475616	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000510775	ENST00000263593		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000510775	ENST00000545756		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
intron-intron	ENST00000510775	ENST00000525730		TCGA	RV	KIRC	TCGA-BP-4968-01A	MYLK	chr3	123331145	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000323851	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000323851	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000354944	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000521414	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000537882	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000414097	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518176	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000522476	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000309364		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000359180		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000317589		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000355397		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000429027		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000539256		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000299275		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000538714		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000543806		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000424268		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000540972		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000518066	ENST00000510738		TCGA	RV	KIRC	TCGA-CJ-4639-01A	NDRG1	chr8	134249419	-	PLEKHA5	chr12	19441012	+
In-frame	ENST00000376279	ENST00000400324		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376279	ENST00000400330		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376279	ENST00000400319		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376279	ENST00000400320		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376279	ENST00000377908		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376279	ENST00000267215		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
5CDS-intron	ENST00000376279	ENST00000465066		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376286	ENST00000400324		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376286	ENST00000400330		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376286	ENST00000400319		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376286	ENST00000400320		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376286	ENST00000377908		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376286	ENST00000267215		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
5CDS-intron	ENST00000376286	ENST00000465066		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376285	ENST00000400324		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376285	ENST00000400330		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376285	ENST00000400319		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376285	ENST00000400320		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376285	ENST00000377908		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
In-frame	ENST00000376285	ENST00000267215		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
5CDS-intron	ENST00000376285	ENST00000465066		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-3CDS	ENST00000485946	ENST00000400324		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-3CDS	ENST00000485946	ENST00000400330		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-3CDS	ENST00000485946	ENST00000400319		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-3CDS	ENST00000485946	ENST00000400320		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-3CDS	ENST00000485946	ENST00000377908		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-3CDS	ENST00000485946	ENST00000267215		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
intron-intron	ENST00000485946	ENST00000465066		TCGA	RV	KIRC	TCGA-BP-4173-01A	PCCA	chr13	100861717	+	DIAPH3	chr13	60616954	-
5CDS-5UTR	ENST00000263666	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000263666	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000263666	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000263666	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466780	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466780	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466780	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466780	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000308537	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000308537	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000308537	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
5CDS-5UTR	ENST00000308537	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000462146	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000462146	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000462146	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000462146	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000535920	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000535920	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000535920	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000535920	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000479530	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000479530	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000479530	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000479530	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466348	ENST00000430702		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466348	ENST00000394020		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466348	ENST00000257527		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
intron-5UTR	ENST00000466348	ENST00000517905		TCGA	RV	KIRC	TCGA-B8-A7U6-01A	PDZRN3	chr3	73651505	-	ADAM19	chr5	156997988	-
In-frame	ENST00000394936	ENST00000263593		TCGA	RV	KIRC	TCGA-B8-5164-01A	PSAP	chr10	73576058	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000394936	ENST00000545756		TCGA	RV	KIRC	TCGA-B8-5164-01A	PSAP	chr10	73576058	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000394936	ENST00000525730		TCGA	RV	KIRC	TCGA-B8-5164-01A	PSAP	chr10	73576058	-	SIAE	chr11	124543777	-
In-frame	ENST00000394934	ENST00000263593		TCGA	RV	KIRC	TCGA-B8-5164-01A	PSAP	chr10	73576058	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000394934	ENST00000545756		TCGA	RV	KIRC	TCGA-B8-5164-01A	PSAP	chr10	73576058	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000394934	ENST00000525730		TCGA	RV	KIRC	TCGA-B8-5164-01A	PSAP	chr10	73576058	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000372733	ENST00000233057		TCGA	RV	KIRC	TCGA-B0-5691-01A	SDC4	chr20	43953928	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000372733	ENST00000395127		TCGA	RV	KIRC	TCGA-B0-5691-01A	SDC4	chr20	43953928	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000372733	ENST00000405334		TCGA	RV	KIRC	TCGA-B0-5691-01A	SDC4	chr20	43953928	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000537976	ENST00000233057		TCGA	RV	KIRC	TCGA-B0-5691-01A	SDC4	chr20	43953928	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000537976	ENST00000395127		TCGA	RV	KIRC	TCGA-B0-5691-01A	SDC4	chr20	43953928	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000537976	ENST00000405334		TCGA	RV	KIRC	TCGA-B0-5691-01A	SDC4	chr20	43953928	-	EIF2AK2	chr2	37342384	-
5CDS-5UTR	ENST00000376020	ENST00000376150		TCGA	RV	KIRC	TCGA-B0-4838-01A	SHROOM4	chrX	50556902	-	PAGE1	chrX	49459381	-
5CDS-5UTR	ENST00000289292	ENST00000376150		TCGA	RV	KIRC	TCGA-B0-4838-01A	SHROOM4	chrX	50556902	-	PAGE1	chrX	49459381	-
intron-5UTR	ENST00000483955	ENST00000376150		TCGA	RV	KIRC	TCGA-B0-4838-01A	SHROOM4	chrX	50556902	-	PAGE1	chrX	49459381	-
intron-5UTR	ENST00000460112	ENST00000376150		TCGA	RV	KIRC	TCGA-B0-4838-01A	SHROOM4	chrX	50556902	-	PAGE1	chrX	49459381	-
5CDS-intron	ENST00000305366	ENST00000484427		TCGA	RV	KIRC	TCGA-CJ-6032-01A	TM4SF1	chr3	149086810	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000305366	ENST00000371764		TCGA	RV	KIRC	TCGA-CJ-6032-01A	TM4SF1	chr3	149086810	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000472441	ENST00000484427		TCGA	RV	KIRC	TCGA-CJ-6032-01A	TM4SF1	chr3	149086810	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000472441	ENST00000371764		TCGA	RV	KIRC	TCGA-CJ-6032-01A	TM4SF1	chr3	149086810	-	DDX27	chr20	47849303	+
Frame-shit	ENST00000482026	ENST00000280326		TCGA	RV	KIRC	TCGA-A3-3382-01A	UGT1A3	chr2	234681945	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000482026	ENST00000503026		TCGA	RV	KIRC	TCGA-A3-3382-01A	UGT1A3	chr2	234681945	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000482026	ENST00000515390		TCGA	RV	KIRC	TCGA-A3-3382-01A	UGT1A3	chr2	234681945	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000482026	ENST00000515676		TCGA	RV	KIRC	TCGA-A3-3382-01A	UGT1A3	chr2	234681945	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000482026	ENST00000506600		TCGA	RV	KIRC	TCGA-A3-3382-01A	UGT1A3	chr2	234681945	+	CCT5	chr5	10250033	+
5CDS-5UTR	ENST00000515059	ENST00000535924		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000515059	ENST00000483110		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000515059	ENST00000284031		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000515059	ENST00000539042		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000515059	ENST00000426972		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000515059	ENST00000542148		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000440890	ENST00000535924		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000440890	ENST00000483110		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000440890	ENST00000284031		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000440890	ENST00000539042		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000440890	ENST00000426972		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000440890	ENST00000542148		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000264568	ENST00000535924		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000264568	ENST00000483110		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000264568	ENST00000284031		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000264568	ENST00000539042		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000264568	ENST00000426972		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000264568	ENST00000542148		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000394931	ENST00000535924		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000394931	ENST00000483110		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000394931	ENST00000284031		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000394931	ENST00000539042		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000394931	ENST00000426972		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000394931	ENST00000542148		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000502683	ENST00000535924		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000502683	ENST00000483110		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000502683	ENST00000284031		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000502683	ENST00000539042		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000502683	ENST00000426972		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-5UTR	ENST00000502683	ENST00000542148		TCGA	RV	KIRC	TCGA-B0-4698-01A	BMPR1B	chr4	96025718	+	DDAH1	chr1	85824530	-
5CDS-3UTR	ENST00000469185	ENST00000314332		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000469185	ENST00000396984		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-3UTR	ENST00000312541	ENST00000314332		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000312541	ENST00000396984		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-3UTR	ENST00000541522	ENST00000314332		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000541522	ENST00000396984		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-3UTR	ENST00000429381	ENST00000314332		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
5CDS-intron	ENST00000429381	ENST00000396984		TCGA	RV	KIRC	TCGA-A3-3313-01A	BTN2A1	chr6	26463753	+	HIST1H2BC	chr6	26115363	-
intron-3CDS	ENST00000329623	ENST00000262843		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C2CD2	chr21	43373479	-	MID2	chrX	107083900	+
intron-3CDS	ENST00000329623	ENST00000443968		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C2CD2	chr21	43373479	-	MID2	chrX	107083900	+
Frame-shit	ENST00000380486	ENST00000262843		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C2CD2	chr21	43373479	-	MID2	chrX	107083900	+
Frame-shit	ENST00000380486	ENST00000443968		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C2CD2	chr21	43373479	-	MID2	chrX	107083900	+
5UTR-3CDS	ENST00000478372	ENST00000262843		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C2CD2	chr21	43373479	-	MID2	chrX	107083900	+
5UTR-3CDS	ENST00000478372	ENST00000443968		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C2CD2	chr21	43373479	-	MID2	chrX	107083900	+
In-frame	ENST00000276704	ENST00000287394		TCGA	RV	KIRC	TCGA-BP-4962-01A	C8orf76	chr8	124250038	-	ATAD2	chr8	124351686	-
In-frame	ENST00000276704	ENST00000521903		TCGA	RV	KIRC	TCGA-BP-4962-01A	C8orf76	chr8	124250038	-	ATAD2	chr8	124351686	-
5CDS-intron	ENST00000276704	ENST00000534257		TCGA	RV	KIRC	TCGA-BP-4962-01A	C8orf76	chr8	124250038	-	ATAD2	chr8	124351686	-
5UTR-3CDS	ENST00000521310	ENST00000287394		TCGA	RV	KIRC	TCGA-BP-4962-01A	C8orf76	chr8	124250038	-	ATAD2	chr8	124351686	-
5UTR-3CDS	ENST00000521310	ENST00000521903		TCGA	RV	KIRC	TCGA-BP-4962-01A	C8orf76	chr8	124250038	-	ATAD2	chr8	124351686	-
5UTR-intron	ENST00000521310	ENST00000534257		TCGA	RV	KIRC	TCGA-BP-4962-01A	C8orf76	chr8	124250038	-	ATAD2	chr8	124351686	-
5CDS-intron	ENST00000360467	ENST00000322349		TCGA	RV	KIRC	TCGA-BP-4998-01A	COL4A2	chr13	111165374	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000360467	ENST00000547833		TCGA	RV	KIRC	TCGA-BP-4998-01A	COL4A2	chr13	111165374	+	EEA1	chr12	93229203	-
intron-intron	ENST00000462309	ENST00000322349		TCGA	RV	KIRC	TCGA-BP-4998-01A	COL4A2	chr13	111165374	+	EEA1	chr12	93229203	-
intron-intron	ENST00000462309	ENST00000547833		TCGA	RV	KIRC	TCGA-BP-4998-01A	COL4A2	chr13	111165374	+	EEA1	chr12	93229203	-
intron-3CDS	ENST00000524630	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000524630	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000529919	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000529919	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000399039	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000399039	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000360682	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000360682	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361796	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361796	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361391	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361391	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530094	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530094	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000428599	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000428599	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361332	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000361332	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000527467	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000527467	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000415361	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000415361	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532245	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532245	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532463	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532463	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528232	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528232	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529986	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529986	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000531014	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000531014	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000358694	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000358694	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526772	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526772	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532787	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532787	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000533667	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000533667	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529873	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529873	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000525902	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000525902	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529526	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000529526	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532649	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532649	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000426142	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000426142	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532844	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000532844	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528621	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000528621	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000399050	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000399050	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526357	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526357	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530748	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000530748	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000534579	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000534579	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526938	ENST00000378312		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
5UTR-3CDS	ENST00000526938	ENST00000278422		TCGA	RV	KIRC	TCGA-BP-4962-01A	CTNND1	chr11	57529518	+	TMX2	chr11	57505080	+
intron-3CDS	ENST00000545168	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000545168	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000545168	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000376989	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376989	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376989	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000238018	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000238018	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000238018	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000376986	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376986	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000376986	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
In-frame	ENST00000358399	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000358399	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000358399	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000477618	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000477618	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
intron-intron	ENST00000477618	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3313-01A	GDA	chr9	74867140	+	SIAE	chr11	124543777	-
5CDS-5UTR	ENST00000234160	ENST00000272746		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-5UTR	ENST00000234160	ENST00000359761		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-5UTR	ENST00000234160	ENST00000409415		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-5UTR	ENST00000234160	ENST00000392547		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-5UTR	ENST00000234160	ENST00000392546		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-5UTR	ENST00000234160	ENST00000409891		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-intron	ENST00000234160	ENST00000467149		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5CDS-5UTR	ENST00000234160	ENST00000410117		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000272746		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000359761		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000409415		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000392547		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000392546		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000409891		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-intron	ENST00000493692	ENST00000467149		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
3UTR-5UTR	ENST00000493692	ENST00000410117		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000272746		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000359761		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000409415		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000392547		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000392546		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000409891		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-intron	ENST00000452526	ENST00000467149		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
5UTR-5UTR	ENST00000452526	ENST00000410117		TCGA	RV	KIRC	TCGA-B0-5095-01A	GORASP2	chr2	171785913	+	WIPF1	chr2	175450339	-
In-frame	ENST00000412585	ENST00000280326		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000503026		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000515390		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000515676		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000506600		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000425848	ENST00000280326		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000503026		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000515390		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000515676		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000506600		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000450871	ENST00000280326		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000503026		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000515390		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000515676		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000506600		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000359635	ENST00000280326		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000503026		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000515390		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000515676		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000506600		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000435618	ENST00000280326		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000503026		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000515390		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000515676		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000506600		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000421349	ENST00000280326		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000503026		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000515390		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000515676		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000506600		TCGA	RV	KIRC	TCGA-CZ-5455-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000486901	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000486901	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000486901	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
In-frame	ENST00000374695	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000374695	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000374695	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000430507	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
intron-intron	ENST00000430507	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
intron-intron	ENST00000430507	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3372-01A	HSPG2	chr1	22148738	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000377093	ENST00000253251		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377093	ENST00000377157		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377093	ENST00000343090		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377093	ENST00000377153		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377093	ENST00000475795		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000263934	ENST00000253251		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000263934	ENST00000377157		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000263934	ENST00000343090		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000263934	ENST00000377153		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000263934	ENST00000475795		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377086	ENST00000253251		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377086	ENST00000377157		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377086	ENST00000343090		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377086	ENST00000377153		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377086	ENST00000475795		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377083	ENST00000253251		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377083	ENST00000377157		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377083	ENST00000343090		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377083	ENST00000377153		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377083	ENST00000475795		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377081	ENST00000253251		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377081	ENST00000377157		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000377081	ENST00000343090		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377081	ENST00000377153		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
5CDS-intron	ENST00000377081	ENST00000475795		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
intron-3CDS	ENST00000465635	ENST00000253251		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
intron-3CDS	ENST00000465635	ENST00000377157		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
intron-3CDS	ENST00000465635	ENST00000343090		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
intron-intron	ENST00000465635	ENST00000377153		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
intron-intron	ENST00000465635	ENST00000475795		TCGA	RV	KIRC	TCGA-BP-4338-01A	KIF1B	chr1	10292492	+	UBE4B	chr1	10231196	+
Frame-shit	ENST00000512091	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000512091	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000514591	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000514591	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000511324	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000511324	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000506700	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000506700	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000509896	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000509896	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000545650	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000545650	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000508693	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000508693	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000507164	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000507164	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000507625	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000507625	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000514157	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000514157	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000504896	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000504896	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000514996	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000514996	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000506720	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000506720	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000506746	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000506746	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000508946	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000508946	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
intron-3CDS	ENST00000508078	ENST00000339336		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
intron-3CDS	ENST00000508078	ENST00000504451		TCGA	RV	KIRC	TCGA-BP-5201-01A	LPHN3	chr4	62679607	+	AMTN	chr4	71389585	+
Frame-shit	ENST00000344191	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000351017	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000392108	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000392112	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000366806	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000447894	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000400822	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
intron-3CDS	ENST00000507679	ENST00000239587		TCGA	RV	KIRC	TCGA-B2-3924-01A	MLLT4	chr6	168227917	+	TTLL2	chr6	167752135	+
Frame-shit	ENST00000360772	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000360772	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000360772	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
In-frame	ENST00000359169	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000359169	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000359169	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
In-frame	ENST00000360304	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000360304	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000360304	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3CDS	ENST00000418370	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-5UTR	ENST00000418370	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3UTR	ENST00000418370	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3CDS	ENST00000578202	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-5UTR	ENST00000578202	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3UTR	ENST00000578202	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
Frame-shit	ENST00000354792	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000354792	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000354792	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
In-frame	ENST00000346322	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000346322	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000346322	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3CDS	ENST00000583087	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-5UTR	ENST00000583087	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3UTR	ENST00000583087	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
Frame-shit	ENST00000475616	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000475616	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-3UTR	ENST00000475616	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3CDS	ENST00000510775	ENST00000405863		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-5UTR	ENST00000510775	ENST00000602349		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
intron-3UTR	ENST00000510775	ENST00000497400		TCGA	RV	KIRC	TCGA-BP-4781-01A	MYLK	chr3	123367818	-	NXPH1	chr7	8790638	+
5CDS-5UTR	ENST00000251849	ENST00000314124		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000435575		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000435218		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000251849	ENST00000476331		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000251849	ENST00000431022		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000264728		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000314124		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000435575		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000435218		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000442415	ENST00000476331		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000442415	ENST00000431022		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000264728		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000314124		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000435575		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000435218		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000534997	ENST00000476331		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000534997	ENST00000431022		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000264728		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000314124		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000435575		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000435218		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000542177	ENST00000476331		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000542177	ENST00000431022		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000264728		TCGA	RV	KIRC	TCGA-CJ-4635-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
In-frame	ENST00000457580	ENST00000200457		TCGA	RV	KIRC	TCGA-B0-5097-01A	SRRT	chr7	100473333	+	TRIP6	chr7	100470246	+
In-frame	ENST00000388793	ENST00000200457		TCGA	RV	KIRC	TCGA-B0-5097-01A	SRRT	chr7	100473333	+	TRIP6	chr7	100470246	+
In-frame	ENST00000432932	ENST00000200457		TCGA	RV	KIRC	TCGA-B0-5097-01A	SRRT	chr7	100473333	+	TRIP6	chr7	100470246	+
In-frame	ENST00000347433	ENST00000200457		TCGA	RV	KIRC	TCGA-B0-5097-01A	SRRT	chr7	100473333	+	TRIP6	chr7	100470246	+
Frame-shit	ENST00000369426	ENST00000354219		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
In-frame	ENST00000369426	ENST00000256585		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
Frame-shit	ENST00000369426	ENST00000530654		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
5CDS-intron	ENST00000369426	ENST00000369401		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
Frame-shit	ENST00000235521	ENST00000354219		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
In-frame	ENST00000235521	ENST00000256585		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
Frame-shit	ENST00000235521	ENST00000530654		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
5CDS-intron	ENST00000235521	ENST00000369401		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
intron-3CDS	ENST00000537870	ENST00000354219		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
intron-3CDS	ENST00000537870	ENST00000256585		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
intron-3CDS	ENST00000537870	ENST00000530654		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
intron-intron	ENST00000537870	ENST00000369401		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
5UTR-3CDS	ENST00000497761	ENST00000354219		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
5UTR-3CDS	ENST00000497761	ENST00000256585		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
5UTR-3CDS	ENST00000497761	ENST00000530654		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
5UTR-intron	ENST00000497761	ENST00000369401		TCGA	RV	KIRC	TCGA-CJ-4894-01A	WARS2	chr1	119683178	-	REG4	chr1	120337308	-
3UTR-3CDS	ENST00000494757	ENST00000456989		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
3UTR-3CDS	ENST00000494757	ENST00000544503		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
3UTR-5UTR	ENST00000494757	ENST00000264644		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
3UTR-3UTR	ENST00000494757	ENST00000540388		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
3UTR-5UTR	ENST00000494757	ENST00000436615		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000323571	ENST00000456989		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000323571	ENST00000544503		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000323571	ENST00000264644		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3UTR	ENST00000323571	ENST00000540388		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000323571	ENST00000436615		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000585043	ENST00000456989		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000585043	ENST00000544503		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000585043	ENST00000264644		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3UTR	ENST00000585043	ENST00000540388		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000585043	ENST00000436615		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000394103	ENST00000456989		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000394103	ENST00000544503		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000394103	ENST00000264644		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3UTR	ENST00000394103	ENST00000540388		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000394103	ENST00000436615		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000536600	ENST00000456989		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3CDS	ENST00000536600	ENST00000544503		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000536600	ENST00000264644		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-3UTR	ENST00000536600	ENST00000540388		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5UTR-5UTR	ENST00000536600	ENST00000436615		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
intron-3CDS	ENST00000583130	ENST00000456989		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
intron-3CDS	ENST00000583130	ENST00000544503		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
intron-5UTR	ENST00000583130	ENST00000264644		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
intron-3UTR	ENST00000583130	ENST00000540388		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
intron-5UTR	ENST00000583130	ENST00000436615		TCGA	RV	KIRC	TCGA-CJ-4923-01A	WIPF2	chr17	38375744	+	RAPGEFL1	chr17	38337868	+
5CDS-intron	ENST00000318602	ENST00000354817		TCGA	RV	KIRC	TCGA-B4-5378-01A	A2M	chr12	9220308	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000318602	ENST00000527202		TCGA	RV	KIRC	TCGA-B4-5378-01A	A2M	chr12	9220308	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000318602	ENST00000532502		TCGA	RV	KIRC	TCGA-B4-5378-01A	A2M	chr12	9220308	-	FAR1	chr11	13744912	+
intron-intron	ENST00000542567	ENST00000354817		TCGA	RV	KIRC	TCGA-B4-5378-01A	A2M	chr12	9220308	-	FAR1	chr11	13744912	+
intron-intron	ENST00000542567	ENST00000527202		TCGA	RV	KIRC	TCGA-B4-5378-01A	A2M	chr12	9220308	-	FAR1	chr11	13744912	+
intron-intron	ENST00000542567	ENST00000532502		TCGA	RV	KIRC	TCGA-B4-5378-01A	A2M	chr12	9220308	-	FAR1	chr11	13744912	+
3UTR-3CDS	ENST00000247087	ENST00000378531		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
3UTR-5UTR	ENST00000247087	ENST00000606372		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
3UTR-intron	ENST00000247087	ENST00000378529		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
3UTR-3CDS	ENST00000374011	ENST00000378531		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
3UTR-5UTR	ENST00000374011	ENST00000606372		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
3UTR-intron	ENST00000374011	ENST00000378529		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
intron-3CDS	ENST00000480033	ENST00000378531		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
intron-5UTR	ENST00000480033	ENST00000606372		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
intron-intron	ENST00000480033	ENST00000378529		TCGA	RV	KIRC	TCGA-B0-4690-01A	AHDC1	chr1	27873772	-	MORN1	chr1	2268289	-
5CDS-5UTR	ENST00000264607	ENST00000519846		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000264607	ENST00000518592		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000264607	ENST00000325897		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000264607	ENST00000518858		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
intron-5UTR	ENST00000469885	ENST00000519846		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
intron-intron	ENST00000469885	ENST00000518592		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
intron-5UTR	ENST00000469885	ENST00000325897		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
intron-intron	ENST00000469885	ENST00000518858		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000409297	ENST00000519846		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000409297	ENST00000518592		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000409297	ENST00000325897		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000409297	ENST00000518858		TCGA	RV	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62212236	+
In-frame	ENST00000381668	ENST00000515064		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000381668	ENST00000441778		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000381668	ENST00000304523		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000381668	ENST00000502640		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
5CDS-intron	ENST00000381668	ENST00000503178		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
5CDS-intron	ENST00000381668	ENST00000503829		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000264449	ENST00000515064		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000264449	ENST00000441778		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000264449	ENST00000304523		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000264449	ENST00000502640		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
5CDS-intron	ENST00000264449	ENST00000503178		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
5CDS-intron	ENST00000264449	ENST00000503829		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000510289	ENST00000515064		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000510289	ENST00000441778		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000510289	ENST00000304523		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000510289	ENST00000502640		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
5CDS-intron	ENST00000510289	ENST00000503178		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
5CDS-intron	ENST00000510289	ENST00000503829		TCGA	RV	KIRC	TCGA-CW-5581-01A	ATP8A1	chr4	42658842	-	LDB2	chr4	16760883	-
In-frame	ENST00000375820	ENST00000508784		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000375820	ENST00000513320		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000375820	ENST00000379448		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000375820	ENST00000511534		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000543140	ENST00000508784		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000543140	ENST00000513320		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000543140	ENST00000379448		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000543140	ENST00000511534		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000467182	ENST00000508784		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000467182	ENST00000513320		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000467182	ENST00000379448		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000467182	ENST00000511534		TCGA	RV	KIRC	TCGA-BP-4986-01A	COL4A1	chr13	110801311	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000398665	ENST00000382349		TCGA	RV	KIRC	TCGA-A3-3325-01A	DOT1L	chr19	2207679	+	ONECUT3	chr19	1775152	+
intron-3CDS	ENST00000608122	ENST00000382349		TCGA	RV	KIRC	TCGA-A3-3325-01A	DOT1L	chr19	2207679	+	ONECUT3	chr19	1775152	+
5CDS-intron	ENST00000233813	ENST00000264818		TCGA	RV	KIRC	TCGA-A3-3317-01A	IGFBP5	chr2	217536828	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000233813	ENST00000524462		TCGA	RV	KIRC	TCGA-A3-3317-01A	IGFBP5	chr2	217536828	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000233813	ENST00000525621		TCGA	RV	KIRC	TCGA-A3-3317-01A	IGFBP5	chr2	217536828	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000233813	ENST00000529370		TCGA	RV	KIRC	TCGA-A3-3317-01A	IGFBP5	chr2	217536828	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000233813	ENST00000529422		TCGA	RV	KIRC	TCGA-A3-3317-01A	IGFBP5	chr2	217536828	-	TYK2	chr19	10491352	-
intron-3CDS	ENST00000424272	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000424272	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-intron	ENST00000424272	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409929	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-intron	ENST00000409929	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409589	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-intron	ENST00000409589	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-3CDS	ENST00000409329	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
5UTR-intron	ENST00000409329	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000409288	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-intron	ENST00000409288	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000410023	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-intron	ENST00000410023	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000425019		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000324219		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000350198		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000302217		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000413150		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000347699		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000456652		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-3CDS	ENST00000233946	ENST00000350878		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
intron-intron	ENST00000233946	ENST00000498066		TCGA	RV	KIRC	TCGA-CZ-4857-01A	IL1R1	chr2	102721332	+	MAP4K4	chr2	102499013	+
Frame-shit	ENST00000258874	ENST00000267953		TCGA	RV	KIRC	TCGA-B0-4700-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
Frame-shit	ENST00000258874	ENST00000335661		TCGA	RV	KIRC	TCGA-B0-4700-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000559722	ENST00000267953		TCGA	RV	KIRC	TCGA-B0-4700-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000559722	ENST00000335661		TCGA	RV	KIRC	TCGA-B0-4700-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
5CDS-intron	ENST00000378017	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000378017	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000518547	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000518547	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000354184	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000354184	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000395508	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000395508	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000325064	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000325064	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000431961	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000431961	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000523587	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000523587	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000524090	ENST00000484427		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
intron-intron	ENST00000524090	ENST00000371764		TCGA	RV	KIRC	TCGA-A3-3374-01A	MTSS1	chr8	125563031	-	DDX27	chr20	47849303	+
Frame-shit	ENST00000263857	ENST00000165698		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000535845		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000541910		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000538924		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000540790		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000473407		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000409681	ENST00000165698		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000535845		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000541910		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000538924		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000540790		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000473407		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-3CDS	ENST00000483538	ENST00000165698		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000535845		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000541910		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000538924		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000540790		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000473407		TCGA	RV	KIRC	TCGA-AK-3454-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
In-frame	ENST00000407847	ENST00000435489		TCGA	RV	KIRC	TCGA-BP-4986-01A	PRDM6	chr5	122495332	+	NIPAL4	chr5	156890102	+
In-frame	ENST00000407847	ENST00000311946		TCGA	RV	KIRC	TCGA-BP-4986-01A	PRDM6	chr5	122495332	+	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000407847	ENST00000521390		TCGA	RV	KIRC	TCGA-BP-4986-01A	PRDM6	chr5	122495332	+	NIPAL4	chr5	156890102	+
intron-3CDS	ENST00000464424	ENST00000435489		TCGA	RV	KIRC	TCGA-BP-4986-01A	PRDM6	chr5	122495332	+	NIPAL4	chr5	156890102	+
intron-3CDS	ENST00000464424	ENST00000311946		TCGA	RV	KIRC	TCGA-BP-4986-01A	PRDM6	chr5	122495332	+	NIPAL4	chr5	156890102	+
intron-3UTR	ENST00000464424	ENST00000521390		TCGA	RV	KIRC	TCGA-BP-4986-01A	PRDM6	chr5	122495332	+	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000310137	ENST00000533244		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
5CDS-5UTR	ENST00000310137	ENST00000310190		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-3CDS	ENST00000393979	ENST00000533244		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-5UTR	ENST00000393979	ENST00000310190		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-3CDS	ENST00000409372	ENST00000533244		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-5UTR	ENST00000409372	ENST00000310190		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-3CDS	ENST00000443702	ENST00000533244		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-5UTR	ENST00000443702	ENST00000310190		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-3CDS	ENST00000409738	ENST00000533244		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-5UTR	ENST00000409738	ENST00000310190		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-3CDS	ENST00000461478	ENST00000533244		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
intron-5UTR	ENST00000461478	ENST00000310190		TCGA	RV	KIRC	TCGA-B0-4833-01A	RBM14	chr11	66393149	+	CCS	chr11	66361113	+
5CDS-intron	ENST00000272233	ENST00000233057		TCGA	RV	KIRC	TCGA-B4-5378-01A	RHOB	chr2	20649200	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000272233	ENST00000395127		TCGA	RV	KIRC	TCGA-B4-5378-01A	RHOB	chr2	20649200	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000272233	ENST00000405334		TCGA	RV	KIRC	TCGA-B4-5378-01A	RHOB	chr2	20649200	+	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000401722	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000401722	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000401722	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000228318	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000228318	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000228318	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000188376	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000188376	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000188376	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000551917	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000551917	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000551917	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
In-frame	ENST00000552981	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000552981	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000552981	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000551265	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000551265	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000551265	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000547534	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000547534	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000547534	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000549338	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000549338	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000549338	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000548847	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000548847	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
intron-intron	ENST00000548847	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	SLC25A3	chr12	98995485	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000327367	ENST00000373913		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
Frame-shit	ENST00000327367	ENST00000401952		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
Frame-shit	ENST00000327367	ENST00000373907		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
Frame-shit	ENST00000327367	ENST00000339266		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
5CDS-3UTR	ENST00000327367	ENST00000475894		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
5CDS-3UTR	ENST00000327367	ENST00000340491		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000559092	ENST00000373913		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000559092	ENST00000401952		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000559092	ENST00000373907		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000559092	ENST00000339266		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000559092	ENST00000475894		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000559092	ENST00000340491		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000540846	ENST00000373913		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000540846	ENST00000401952		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000540846	ENST00000373907		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000540846	ENST00000339266		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000540846	ENST00000475894		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000540846	ENST00000340491		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000439724	ENST00000373913		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000439724	ENST00000401952		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000439724	ENST00000373907		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000439724	ENST00000339266		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000439724	ENST00000475894		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000439724	ENST00000340491		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000537194	ENST00000373913		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000537194	ENST00000401952		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000537194	ENST00000373907		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3CDS	ENST00000537194	ENST00000339266		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000537194	ENST00000475894		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
intron-3UTR	ENST00000537194	ENST00000340491		TCGA	RV	KIRC	TCGA-CW-6087-01A	SMAD3	chr15	67358698	+	DLGAP4	chr20	35125108	+
Frame-shit	ENST00000358409	ENST00000448120		TCGA	RV	KIRC	TCGA-CJ-6030-01A	TEAD4	chr12	3121398	+	TULP3	chr12	3018695	+
Frame-shit	ENST00000358409	ENST00000397132		TCGA	RV	KIRC	TCGA-CJ-6030-01A	TEAD4	chr12	3121398	+	TULP3	chr12	3018695	+
Frame-shit	ENST00000359864	ENST00000448120		TCGA	RV	KIRC	TCGA-CJ-6030-01A	TEAD4	chr12	3121398	+	TULP3	chr12	3018695	+
Frame-shit	ENST00000359864	ENST00000397132		TCGA	RV	KIRC	TCGA-CJ-6030-01A	TEAD4	chr12	3121398	+	TULP3	chr12	3018695	+
5UTR-3CDS	ENST00000397122	ENST00000448120		TCGA	RV	KIRC	TCGA-CJ-6030-01A	TEAD4	chr12	3121398	+	TULP3	chr12	3018695	+
5UTR-3CDS	ENST00000397122	ENST00000397132		TCGA	RV	KIRC	TCGA-CJ-6030-01A	TEAD4	chr12	3121398	+	TULP3	chr12	3018695	+
intron-3CDS	ENST00000563763	ENST00000262467		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000345221		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000269280		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000572272		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000354411		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000577119		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000571307		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000574946	ENST00000262467		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000345221		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000269280		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000572272		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000354411		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000577119		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000571307		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000573634	ENST00000262467		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000345221		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000269280		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000572272		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000354411		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000577119		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000571307		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000317744	ENST00000262467		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000345221		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000269280		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000572272		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000354411		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000577119		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000571307		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000574232	ENST00000262467		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000345221		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000269280		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000572272		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000354411		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000577119		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000571307		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000539421	ENST00000262467		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000345221		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000269280		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000572272		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000354411		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000577119		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000571307		TCGA	RV	KIRC	TCGA-CJ-5684-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
In-frame	ENST00000421419	ENST00000396231		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000421419	ENST00000262726		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000421419	ENST00000358439		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000421419	ENST00000356087		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000421419	ENST00000461800		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000377264	ENST00000396231		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000377264	ENST00000262726		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000377264	ENST00000358439		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000377264	ENST00000356087		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000377264	ENST00000461800		TCGA	RV	KIRC	TCGA-BP-4173-01A	ATG2A	chr11	64680510	-	EFCAB6	chr22	43936237	-
intron-5UTR	ENST00000417172	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000361388	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000422748	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000361675	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000361901	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000393118	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000495522	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000424922	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000543443	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000466704	ENST00000271636		TCGA	RV	KIRC	TCGA-AS-3777-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000209875	ENST00000312156		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000209875	ENST00000435572		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000209875	ENST00000540264		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000209875	ENST00000553070		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000312156		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000435572		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000540264		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000439541	ENST00000553070		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000312156		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000435572		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000540264		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000550411	ENST00000553070		TCGA	RV	KIRC	TCGA-BP-4761-01A	CBX5	chr12	54639899	-	NFE2	chr12	54689088	-
intron-intron	ENST00000548898	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000548898	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000548898	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000548898	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000548898	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000548898	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000548898	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552067	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000420846	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000548160	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000546939	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000552692	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000549117	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000257857	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000552754	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000270189		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000429089		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000220809		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000352041		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000519510		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000429710		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-intron	ENST00000550776	ENST00000524009		TCGA	RV	KIRC	TCGA-BP-5199-01A	CD63	chr12	56119254	-	PLAT	chr8	42051245	-
intron-3CDS	ENST00000442713	ENST00000586448		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
intron-3CDS	ENST00000442713	ENST00000255226		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
intron-3CDS	ENST00000442713	ENST00000589658		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
Frame-shit	ENST00000269445	ENST00000586448		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
Frame-shit	ENST00000269445	ENST00000255226		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
In-frame	ENST00000269445	ENST00000589658		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
intron-3CDS	ENST00000584977	ENST00000586448		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
intron-3CDS	ENST00000584977	ENST00000255226		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
intron-3CDS	ENST00000584977	ENST00000589658		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
5UTR-3CDS	ENST00000578396	ENST00000586448		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
5UTR-3CDS	ENST00000578396	ENST00000255226		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
5UTR-3CDS	ENST00000578396	ENST00000589658		TCGA	RV	KIRC	TCGA-B0-4844-01A	DYM	chr18	46904937	-	SLC14A2	chr18	43246102	+
Frame-shit	ENST00000373555	ENST00000373574		TCGA	RV	KIRC	TCGA-DV-5576-01A	GOLGA1	chr9	127660828	-	WDR38	chr9	127616484	+
5CDS-intron	ENST00000434000	ENST00000373297		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
5CDS-intron	ENST00000434000	ENST00000314607		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
5CDS-intron	ENST00000434000	ENST00000482131		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
5CDS-intron	ENST00000591680	ENST00000373297		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
5CDS-intron	ENST00000591680	ENST00000314607		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
5CDS-intron	ENST00000591680	ENST00000482131		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000586265	ENST00000373297		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000586265	ENST00000314607		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000586265	ENST00000482131		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000592154	ENST00000373297		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000592154	ENST00000314607		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000592154	ENST00000482131		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000588554	ENST00000373297		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000588554	ENST00000314607		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-intron	ENST00000588554	ENST00000482131		TCGA	RV	KIRC	TCGA-B8-5551-01A	GPATCH8	chr17	42501717	-	ZMYM4	chr1	35851043	+
intron-3CDS	ENST00000302640	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000302640	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000302640	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3UTR	ENST00000302640	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000354582	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000354582	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000354582	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000354582	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000423119	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000423119	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000423119	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000423119	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000456211	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000456211	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000456211	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3UTR	ENST00000456211	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000357086	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000357086	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000357086	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000357086	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000544951	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000544951	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
In-frame	ENST00000544951	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000544951	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000443694	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000443694	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000443694	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3UTR	ENST00000443694	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000463980	ENST00000358065		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000463980	ENST00000430981		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000463980	ENST00000425863		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
intron-3UTR	ENST00000463980	ENST00000462115		TCGA	RV	KIRC	TCGA-BP-5195-01A	ITPR1	chr3	4695570	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000515393	ENST00000264122		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000515393	ENST00000407712		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000515393	ENST00000394027		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000515393	ENST00000403724		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000515393	ENST00000405772		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000515393	ENST00000545639		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
Frame-shit	ENST00000429576	ENST00000264122		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000429576	ENST00000407712		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000429576	ENST00000394027		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000429576	ENST00000403724		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000429576	ENST00000405772		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000429576	ENST00000545639		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
Frame-shit	ENST00000312216	ENST00000264122		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000312216	ENST00000407712		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000312216	ENST00000394027		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000312216	ENST00000403724		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000312216	ENST00000405772		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000312216	ENST00000545639		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
Frame-shit	ENST00000505208	ENST00000264122		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505208	ENST00000407712		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505208	ENST00000394027		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505208	ENST00000403724		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505208	ENST00000405772		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505208	ENST00000545639		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
intron-3CDS	ENST00000514040	ENST00000264122		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
intron-intron	ENST00000514040	ENST00000407712		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
intron-intron	ENST00000514040	ENST00000394027		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
intron-intron	ENST00000514040	ENST00000403724		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
intron-intron	ENST00000514040	ENST00000405772		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
intron-intron	ENST00000514040	ENST00000545639		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
In-frame	ENST00000505078	ENST00000264122		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505078	ENST00000407712		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505078	ENST00000394027		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505078	ENST00000403724		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505078	ENST00000405772		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
5CDS-intron	ENST00000505078	ENST00000545639		TCGA	RV	KIRC	TCGA-B0-4849-01A	MCTP1	chr5	94204038	-	CBLB	chr3	105495386	-
In-frame	ENST00000405201	ENST00000370467		TCGA	RV	KIRC	TCGA-B0-4699-01A	NCOR2	chr12	124882665	-	FMR1NB	chrX	147084721	+
Frame-shit	ENST00000404621	ENST00000370467		TCGA	RV	KIRC	TCGA-B0-4699-01A	NCOR2	chr12	124882665	-	FMR1NB	chrX	147084721	+
Frame-shit	ENST00000404121	ENST00000370467		TCGA	RV	KIRC	TCGA-B0-4699-01A	NCOR2	chr12	124882665	-	FMR1NB	chrX	147084721	+
Frame-shit	ENST00000356219	ENST00000370467		TCGA	RV	KIRC	TCGA-B0-4699-01A	NCOR2	chr12	124882665	-	FMR1NB	chrX	147084721	+
Frame-shit	ENST00000397355	ENST00000370467		TCGA	RV	KIRC	TCGA-B0-4699-01A	NCOR2	chr12	124882665	-	FMR1NB	chrX	147084721	+
Frame-shit	ENST00000429285	ENST00000370467		TCGA	RV	KIRC	TCGA-B0-4699-01A	NCOR2	chr12	124882665	-	FMR1NB	chrX	147084721	+
5UTR-3CDS	ENST00000325083	ENST00000519301		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000520407		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000523079		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000338921		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000356819		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000287845		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000325083	ENST00000341377		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000325083	ENST00000287842		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000325083	ENST00000521670		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000325083	ENST00000405005		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000520502		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000539990		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000325083	ENST00000523681		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3CDS	ENST00000519253	ENST00000519301		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000520407		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000523079		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000338921		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000356819		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000287845		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000519253	ENST00000341377		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000519253	ENST00000287842		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000519253	ENST00000521670		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000519253	ENST00000405005		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000520502		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000539990		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000519253	ENST00000523681		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3CDS	ENST00000524226	ENST00000519301		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000520407		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000523079		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000338921		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000356819		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000287845		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000524226	ENST00000341377		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000524226	ENST00000287842		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000524226	ENST00000521670		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000524226	ENST00000405005		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000520502		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000539990		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000524226	ENST00000523681		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3CDS	ENST00000518537	ENST00000519301		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000520407		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000523079		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000338921		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000356819		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000287845		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000518537	ENST00000341377		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000518537	ENST00000287842		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000518537	ENST00000521670		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-3UTR	ENST00000518537	ENST00000405005		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000520502		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000539990		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
5UTR-intron	ENST00000518537	ENST00000523681		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-3CDS	ENST00000518936	ENST00000519301		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000520407		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000523079		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000338921		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000356819		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000287845		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-3UTR	ENST00000518936	ENST00000341377		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-3UTR	ENST00000518936	ENST00000287842		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-3UTR	ENST00000518936	ENST00000521670		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-3UTR	ENST00000518936	ENST00000405005		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000520502		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000539990		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
3UTR-intron	ENST00000518936	ENST00000523681		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-3CDS	ENST00000327578	ENST00000519301		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000520407		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000523079		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000338921		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000356819		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000287845		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-3UTR	ENST00000327578	ENST00000341377		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-3UTR	ENST00000327578	ENST00000287842		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-3UTR	ENST00000327578	ENST00000521670		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-3UTR	ENST00000327578	ENST00000405005		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000520502		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000539990		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
intron-intron	ENST00000327578	ENST00000523681		TCGA	RV	KIRC	TCGA-B8-5553-01A	PCM1	chr8	17782289	+	NRG1	chr8	32611890	+
Frame-shit	ENST00000263857	ENST00000165698		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000535845		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000541910		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000538924		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000540790		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000473407		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000409681	ENST00000165698		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000535845		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000541910		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000538924		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000540790		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000473407		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-3CDS	ENST00000483538	ENST00000165698		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000535845		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000541910		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000538924		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000540790		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000473407		TCGA	RV	KIRC	TCGA-B0-4822-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000345512	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000345512	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000345512	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000345512	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000373779	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000373779	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000373779	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000373779	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000356870	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000356870	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000356870	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000356870	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000323874	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000323874	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000323874	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000323874	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000428026	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000428026	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000428026	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000428026	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000460170	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
Frame-shit	ENST00000460170	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000460170	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000460170	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
3UTR-3CDS	ENST00000415600	ENST00000530878		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
3UTR-3CDS	ENST00000415600	ENST00000361897		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
3UTR-intron	ENST00000415600	ENST00000493151		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
3UTR-intron	ENST00000415600	ENST00000454693		TCGA	RV	KIRC	TCGA-B0-4698-01A	PTPRU	chr1	29618538	+	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000507668	ENST00000338008		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000507668	ENST00000510158		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-5UTR	ENST00000507668	ENST00000505560		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000507668	ENST00000512442		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000512972	ENST00000338008		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000512972	ENST00000510158		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-5UTR	ENST00000512972	ENST00000505560		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000512972	ENST00000512442		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000509193	ENST00000338008		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000509193	ENST00000510158		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-5UTR	ENST00000509193	ENST00000505560		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000509193	ENST00000512442		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000512721	ENST00000338008		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000512721	ENST00000510158		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-5UTR	ENST00000512721	ENST00000505560		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5CDS-intron	ENST00000512721	ENST00000512442		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5UTR-intron	ENST00000513907	ENST00000338008		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5UTR-intron	ENST00000513907	ENST00000510158		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5UTR-5UTR	ENST00000513907	ENST00000505560		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
5UTR-intron	ENST00000513907	ENST00000512442		TCGA	RV	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79723311	+
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRC	TCGA-BP-4758-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
5CDS-intron	ENST00000357214	ENST00000487451		TCGA	RV	KIRC	TCGA-BP-4758-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRC	TCGA-BP-4758-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-intron	ENST00000468598	ENST00000487451		TCGA	RV	KIRC	TCGA-BP-4758-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
In-frame	ENST00000336915	ENST00000389840		TCGA	RV	KIRC	TCGA-BP-4983-01A	SKAP1	chr17	46423267	-	DNAH17	chr17	76481115	-
In-frame	ENST00000336915	ENST00000585328		TCGA	RV	KIRC	TCGA-BP-4983-01A	SKAP1	chr17	46423267	-	DNAH17	chr17	76481115	-
5CDS-5UTR	ENST00000336915	ENST00000586052		TCGA	RV	KIRC	TCGA-BP-4983-01A	SKAP1	chr17	46423267	-	DNAH17	chr17	76481115	-
In-frame	ENST00000584924	ENST00000389840		TCGA	RV	KIRC	TCGA-BP-4983-01A	SKAP1	chr17	46423267	-	DNAH17	chr17	76481115	-
In-frame	ENST00000584924	ENST00000585328		TCGA	RV	KIRC	TCGA-BP-4983-01A	SKAP1	chr17	46423267	-	DNAH17	chr17	76481115	-
5CDS-5UTR	ENST00000584924	ENST00000586052		TCGA	RV	KIRC	TCGA-BP-4983-01A	SKAP1	chr17	46423267	-	DNAH17	chr17	76481115	-
5UTR-5UTR	ENST00000514251	ENST00000286353		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-5UTR	ENST00000514251	ENST00000502783		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-5UTR	ENST00000514251	ENST00000393010		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000505502		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000504264		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000508812		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000393007		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000321464	ENST00000286353		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000321464	ENST00000502783		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000321464	ENST00000393010		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000505502		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000504264		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000508812		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000393007		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000441582	ENST00000286353		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000441582	ENST00000502783		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000441582	ENST00000393010		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000505502		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000504264		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000508812		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000393007		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000512327	ENST00000286353		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000512327	ENST00000502783		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000512327	ENST00000393010		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000505502		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000504264		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000508812		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000393007		TCGA	RV	KIRC	TCGA-CJ-5671-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
Frame-shit	ENST00000196489	ENST00000377452		TCGA	RV	KIRC	TCGA-A3-3328-01A	ZNF416	chr19	58089425	-	DTD1	chr20	18724744	+
5CDS-intron	ENST00000196489	ENST00000494921		TCGA	RV	KIRC	TCGA-A3-3328-01A	ZNF416	chr19	58089425	-	DTD1	chr20	18724744	+
Frame-shit	ENST00000320895	ENST00000264933		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
Frame-shit	ENST00000320895	ENST00000505221		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000320895	ENST00000509581		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000320895	ENST00000507528		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000320895	ENST00000511482		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
Frame-shit	ENST00000507807	ENST00000264933		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
Frame-shit	ENST00000507807	ENST00000505221		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000507807	ENST00000509581		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000507807	ENST00000507528		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000507807	ENST00000511482		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
Frame-shit	ENST00000320927	ENST00000264933		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
Frame-shit	ENST00000320927	ENST00000505221		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000320927	ENST00000509581		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000320927	ENST00000507528		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5CDS-intron	ENST00000320927	ENST00000511482		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5UTR-3CDS	ENST00000506641	ENST00000264933		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5UTR-3CDS	ENST00000506641	ENST00000505221		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5UTR-intron	ENST00000506641	ENST00000509581		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5UTR-intron	ENST00000506641	ENST00000507528		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
5UTR-intron	ENST00000506641	ENST00000511482		TCGA	RV	KIRC	TCGA-BP-4991-01A	CLPTM1L	chr5	1320731	-	PDCD6	chr5	304292	+
Frame-shit	ENST00000395965	ENST00000437043		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
Frame-shit	ENST00000395965	ENST00000379904		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-intron	ENST00000395965	ENST00000510309		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-intron	ENST00000395965	ENST00000515095		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
Frame-shit	ENST00000505869	ENST00000437043		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
Frame-shit	ENST00000505869	ENST00000379904		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-intron	ENST00000505869	ENST00000510309		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-intron	ENST00000505869	ENST00000515095		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
intron-3CDS	ENST00000509739	ENST00000437043		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
intron-3CDS	ENST00000509739	ENST00000379904		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
intron-intron	ENST00000509739	ENST00000510309		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
intron-intron	ENST00000509739	ENST00000515095		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
Frame-shit	ENST00000509163	ENST00000437043		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
Frame-shit	ENST00000509163	ENST00000379904		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-intron	ENST00000509163	ENST00000510309		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-intron	ENST00000509163	ENST00000515095		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5UTR-3CDS	ENST00000504768	ENST00000437043		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5UTR-3CDS	ENST00000504768	ENST00000379904		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5UTR-intron	ENST00000504768	ENST00000510309		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5UTR-intron	ENST00000504768	ENST00000515095		TCGA	RV	KIRC	TCGA-BP-5004-01A	FAM172A	chr5	93386436	-	ERAP2	chr5	96251392	+
5CDS-3UTR	ENST00000270112	ENST00000468306		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000270112	ENST00000370401		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000270112	ENST00000432680		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000270112	ENST00000262858		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000270112	ENST00000426613		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
5CDS-intron	ENST00000270112	ENST00000455522		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
intron-3UTR	ENST00000465574	ENST00000468306		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
intron-3UTR	ENST00000465574	ENST00000370401		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
intron-3UTR	ENST00000465574	ENST00000432680		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
intron-3UTR	ENST00000465574	ENST00000262858		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
intron-3UTR	ENST00000465574	ENST00000426613		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
intron-intron	ENST00000465574	ENST00000455522		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HUNK	chr21	33246248	+	MAMLD1	chrX	149638017	+
Frame-shit	ENST00000398645	ENST00000320580		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
Frame-shit	ENST00000398645	ENST00000529757		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
Frame-shit	ENST00000398645	ENST00000524815		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
Frame-shit	ENST00000529006	ENST00000320580		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
Frame-shit	ENST00000529006	ENST00000529757		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
Frame-shit	ENST00000529006	ENST00000524815		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000526258	ENST00000320580		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000526258	ENST00000529757		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000526258	ENST00000524815		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000308783	ENST00000320580		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000308783	ENST00000529757		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000308783	ENST00000524815		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000530342	ENST00000320580		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000530342	ENST00000529757		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-3CDS	ENST00000530342	ENST00000524815		TCGA	RV	KIRC	TCGA-B0-5713-01A	KDM2A	chr11	66888829	+	PACS1	chr11	66010383	+
intron-5UTR	ENST00000354570	ENST00000462705		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000354570	ENST00000393785		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000354570	ENST00000481632		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000354570	ENST00000471418		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000354570	ENST00000357258		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000354570	ENST00000464560		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000354570	ENST00000488663		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000354570	ENST00000474710		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000454590	ENST00000462705		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000454590	ENST00000393785		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000454590	ENST00000481632		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000454590	ENST00000471418		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000454590	ENST00000357258		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000454590	ENST00000464560		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000454590	ENST00000488663		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000454590	ENST00000474710		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-5UTR	ENST00000544465	ENST00000462705		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-intron	ENST00000544465	ENST00000393785		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-intron	ENST00000544465	ENST00000481632		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-intron	ENST00000544465	ENST00000471418		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-5UTR	ENST00000544465	ENST00000357258		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-intron	ENST00000544465	ENST00000464560		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-5UTR	ENST00000544465	ENST00000488663		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
5CDS-intron	ENST00000544465	ENST00000474710		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000438100	ENST00000462705		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000438100	ENST00000393785		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000438100	ENST00000481632		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000438100	ENST00000471418		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000438100	ENST00000357258		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000438100	ENST00000464560		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000438100	ENST00000488663		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000438100	ENST00000474710		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000432797	ENST00000462705		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000432797	ENST00000393785		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000432797	ENST00000481632		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000432797	ENST00000471418		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000432797	ENST00000357258		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000432797	ENST00000464560		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-5UTR	ENST00000432797	ENST00000488663		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
intron-intron	ENST00000432797	ENST00000474710		TCGA	RV	KIRC	TCGA-BP-4346-01A	MAP7	chr6	136787899	-	ZBTB20	chr3	114619189	-
Frame-shit	ENST00000378137	ENST00000225402		TCGA	RV	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36864125	+	AATF	chr17	35345818	+
5CDS-intron	ENST00000378137	ENST00000590321		TCGA	RV	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36864125	+	AATF	chr17	35345818	+
Frame-shit	ENST00000325718	ENST00000225402		TCGA	RV	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36864125	+	AATF	chr17	35345818	+
5CDS-intron	ENST00000325718	ENST00000590321		TCGA	RV	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36864125	+	AATF	chr17	35345818	+
intron-3CDS	ENST00000579179	ENST00000225402		TCGA	RV	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36864125	+	AATF	chr17	35345818	+
intron-intron	ENST00000579179	ENST00000590321		TCGA	RV	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36864125	+	AATF	chr17	35345818	+
5CDS-intron	ENST00000407008	ENST00000477496		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000460856		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000240874		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000360013		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000393496		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000291478		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000428018		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000459915		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000407008	ENST00000462213		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000477496		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000460856		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000240874		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000360013		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000393496		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000291478		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000428018		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000459915		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000583517	ENST00000462213		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000477496		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000460856		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000240874		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000360013		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000393496		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000291478		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000428018		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000459915		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
intron-intron	ENST00000582037	ENST00000462213		TCGA	RV	KIRC	TCGA-BP-4798-01A	NLK	chr17	26512291	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000331483	ENST00000261531		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000331483	ENST00000554775		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000331483	ENST00000555761		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000576390	ENST00000261531		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000576390	ENST00000554775		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000576390	ENST00000555761		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000439918	ENST00000261531		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000439918	ENST00000554775		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000439918	ENST00000555761		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000472244	ENST00000261531		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000472244	ENST00000554775		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
intron-intron	ENST00000472244	ENST00000555761		TCGA	RV	KIRC	TCGA-CZ-5469-01A	P4HB	chr17	79801037	-	SNW1	chr14	78189203	-
In-frame	ENST00000376573	ENST00000396432		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5CDS-intron	ENST00000376573	ENST00000320481		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5CDS-intron	ENST00000376573	ENST00000493154		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
Frame-shit	ENST00000545335	ENST00000396432		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5CDS-intron	ENST00000545335	ENST00000320481		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5CDS-intron	ENST00000545335	ENST00000493154		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
intron-3CDS	ENST00000323883	ENST00000396432		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
intron-intron	ENST00000323883	ENST00000320481		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
intron-intron	ENST00000323883	ENST00000493154		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5UTR-3CDS	ENST00000422321	ENST00000396432		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5UTR-intron	ENST00000422321	ENST00000320481		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5UTR-intron	ENST00000422321	ENST00000493154		TCGA	RV	KIRC	TCGA-A3-3328-01A	PIP4K2A	chr10	22896856	-	ARHGAP21	chr10	24959326	-
5UTR-3CDS	ENST00000291547	ENST00000243297		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PKNOX1	chr21	44394774	+	H2BFM	chrX	103295395	+
5UTR-3CDS	ENST00000291547	ENST00000355016		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PKNOX1	chr21	44394774	+	H2BFM	chrX	103295395	+
5UTR-3CDS	ENST00000432907	ENST00000243297		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PKNOX1	chr21	44394774	+	H2BFM	chrX	103295395	+
5UTR-3CDS	ENST00000432907	ENST00000355016		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PKNOX1	chr21	44394774	+	H2BFM	chrX	103295395	+
intron-3CDS	ENST00000607150	ENST00000243297		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PKNOX1	chr21	44394774	+	H2BFM	chrX	103295395	+
intron-3CDS	ENST00000607150	ENST00000355016		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PKNOX1	chr21	44394774	+	H2BFM	chrX	103295395	+
5CDS-intron	ENST00000237623	ENST00000264818		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000237623	ENST00000524462		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000237623	ENST00000525621		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000237623	ENST00000529370		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000237623	ENST00000529422		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395080	ENST00000264818		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395080	ENST00000524462		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395080	ENST00000525621		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395080	ENST00000529370		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000395080	ENST00000529422		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000360804	ENST00000264818		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000360804	ENST00000524462		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000360804	ENST00000525621		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000360804	ENST00000529370		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000360804	ENST00000529422		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509659	ENST00000264818		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509659	ENST00000524462		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509659	ENST00000525621		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509659	ENST00000529370		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
intron-intron	ENST00000509659	ENST00000529422		TCGA	RV	KIRC	TCGA-AK-3444-01A	SPP1	chr4	88904562	+	TYK2	chr19	10491352	-
5UTR-intron	ENST00000394253	ENST00000372978		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000494547		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000456846		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000372982		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000472818		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000372977		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000482926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000465926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000394253	ENST00000482432		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000372978		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000494547		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000456846		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000372982		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000472818		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000372977		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000482926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000465926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373010	ENST00000482432		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000372978		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000494547		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000456846		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000372982		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000472818		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000372977		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000482926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000465926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000373006	ENST00000482432		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000372978		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000494547		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000456846		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000372982		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000472818		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000372977		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000482926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000465926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
5UTR-intron	ENST00000297229	ENST00000482432		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000372978		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000494547		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000456846		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000372982		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000472818		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000372977		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000482926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000465926		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
intron-intron	ENST00000373009	ENST00000482432		TCGA	RV	KIRC	TCGA-A3-3313-01A	USP49	chr6	41839302	-	TAF8	chr6	42044838	+
Frame-shit	ENST00000252486	ENST00000280326		TCGA	RV	KIRC	TCGA-A3-3313-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000503026		TCGA	RV	KIRC	TCGA-A3-3313-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000515390		TCGA	RV	KIRC	TCGA-A3-3313-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000515676		TCGA	RV	KIRC	TCGA-A3-3313-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000506600		TCGA	RV	KIRC	TCGA-A3-3313-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000316403	ENST00000280326		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000316403	ENST00000503026		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000316403	ENST00000515390		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000316403	ENST00000515676		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000316403	ENST00000506600		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000546343	ENST00000280326		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000546343	ENST00000503026		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000546343	ENST00000515390		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000546343	ENST00000515676		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000546343	ENST00000506600		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000560366	ENST00000280326		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000560366	ENST00000503026		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000560366	ENST00000515390		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000560366	ENST00000515676		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000560366	ENST00000506600		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000405140	ENST00000280326		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405140	ENST00000503026		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405140	ENST00000515390		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405140	ENST00000515676		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405140	ENST00000506600		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000523500	ENST00000280326		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000523500	ENST00000503026		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000523500	ENST00000515390		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000523500	ENST00000515676		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000523500	ENST00000506600		TCGA	RV	KIRC	TCGA-CJ-6030-01A	CLU	chr8	27455514	-	CCT5	chr5	10250033	+
5UTR-5UTR	ENST00000002596	ENST00000527185		TCGA	RV	KIRC	TCGA-CZ-5982-01A	HS3ST1	chr4	11430323	-	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000002596	ENST00000528682		TCGA	RV	KIRC	TCGA-CZ-5982-01A	HS3ST1	chr4	11430323	-	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000002596	ENST00000524871		TCGA	RV	KIRC	TCGA-CZ-5982-01A	HS3ST1	chr4	11430323	-	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000002596	ENST00000418526		TCGA	RV	KIRC	TCGA-CZ-5982-01A	HS3ST1	chr4	11430323	-	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000002596	ENST00000279463		TCGA	RV	KIRC	TCGA-CZ-5982-01A	HS3ST1	chr4	11430323	-	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000002596	ENST00000524560		TCGA	RV	KIRC	TCGA-CZ-5982-01A	HS3ST1	chr4	11430323	-	CNTN5	chr11	99426876	+
5UTR-3CDS	ENST00000265192	ENST00000323760		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000265192	ENST00000357274		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000265192	ENST00000348983		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000265192	ENST00000356505		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000265192	ENST00000415130		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000265192	ENST00000513970		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000265192	ENST00000514555		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000323760		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000357274		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000348983		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000356505		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000415130		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000513970		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
3UTR-3CDS	ENST00000511381	ENST00000514555		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000323760		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000357274		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000348983		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000356505		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000415130		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000513970		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000511706	ENST00000514555		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000323760		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000357274		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000348983		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000356505		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000415130		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000513970		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394795	ENST00000514555		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000323760		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000357274		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000348983		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000356505		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000415130		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000513970		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000510080	ENST00000514555		TCGA	RV	KIRC	TCGA-BP-5175-01A	PAIP2	chr5	138677669	+	CDC25C	chr5	137627805	-
5CDS-intron	ENST00000256474	ENST00000458385		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
5CDS-intron	ENST00000256474	ENST00000514798		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
5CDS-intron	ENST00000256474	ENST00000296775		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
5CDS-intron	ENST00000256474	ENST00000502992		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
intron-intron	ENST00000345392	ENST00000458385		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
intron-intron	ENST00000345392	ENST00000514798		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
intron-intron	ENST00000345392	ENST00000296775		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
intron-intron	ENST00000345392	ENST00000502992		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
3UTR-intron	ENST00000477538	ENST00000458385		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
3UTR-intron	ENST00000477538	ENST00000514798		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
3UTR-intron	ENST00000477538	ENST00000296775		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
3UTR-intron	ENST00000477538	ENST00000502992		TCGA	RV	KIRC	TCGA-CZ-5468-01A	VHL	chr3	10188320	+	KIAA1430	chr4	186128945	-
In-frame	ENST00000285238	ENST00000329117		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
5CDS-intron	ENST00000285238	ENST00000361588		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
intron-3CDS	ENST00000515707	ENST00000329117		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
intron-intron	ENST00000515707	ENST00000361588		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
intron-3CDS	ENST00000427699	ENST00000329117		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
intron-intron	ENST00000427699	ENST00000361588		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
intron-3CDS	ENST00000510891	ENST00000329117		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
intron-intron	ENST00000510891	ENST00000361588		TCGA	RV	KIRC	TCGA-CW-5584-01A	ABCC3	chr17	48751019	+	BCAN	chr1	156627467	+
5CDS-intron	ENST00000514455	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000511566	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
intron-intron	ENST00000376817	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
intron-intron	ENST00000512805	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
intron-intron	ENST00000504726	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
intron-intron	ENST00000511900	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
intron-intron	ENST00000456394	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
intron-intron	ENST00000505461	ENST00000354185		TCGA	RV	KIRC	TCGA-A3-3317-01A	GNB2L1	chr5	180663929	-	DDX21	chr10	70723858	+
In-frame	ENST00000604948	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000604948	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000604948	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000604948	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000557565	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000557565	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000557565	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000557565	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000250377	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000250377	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000250377	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000250377	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000321130	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000321130	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000321130	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000321130	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000534898	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000534898	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000534898	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000534898	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000603544	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000603544	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000603544	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000603544	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000605870	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000605870	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000605870	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
5CDS-intron	ENST00000605870	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-3CDS	ENST00000603588	ENST00000396472		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-3CDS	ENST00000603588	ENST00000382406		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-3CDS	ENST00000603588	ENST00000280987		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
intron-intron	ENST00000603588	ENST00000554052		TCGA	RV	KIRC	TCGA-B0-4849-01A	KIAA0391	chr14	35649983	+	FAM177A1	chr14	35546356	+
In-frame	ENST00000285968	ENST00000344400		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
In-frame	ENST00000285968	ENST00000423565		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
In-frame	ENST00000285968	ENST00000354475		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
5CDS-5UTR	ENST00000285968	ENST00000485942		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3CDS	ENST00000440390	ENST00000344400		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3CDS	ENST00000440390	ENST00000423565		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3CDS	ENST00000440390	ENST00000354475		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-5UTR	ENST00000440390	ENST00000485942		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3CDS	ENST00000489493	ENST00000344400		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3CDS	ENST00000489493	ENST00000423565		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3CDS	ENST00000489493	ENST00000354475		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-5UTR	ENST00000489493	ENST00000485942		TCGA	RV	KIRC	TCGA-B0-4690-01A	NUP205	chr7	135289208	+	WDR91	chr7	134882903	-
intron-3UTR	ENST00000435564	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000435564	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000435564	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000435564	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000435564	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000536095	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000536095	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000536095	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000536095	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000536095	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000409365	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000409365	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000409365	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000409365	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000409365	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000331935	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000331935	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000331935	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000331935	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000331935	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000351439	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000351439	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000351439	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000351439	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
5CDS-3UTR	ENST00000351439	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000410103	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000410103	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000410103	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000410103	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000410103	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000358139	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000358139	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000358139	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000358139	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000358139	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000456212	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000456212	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000456212	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000456212	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000456212	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000346717	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000346717	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000346717	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000346717	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000346717	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000482538	ENST00000475249		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000482538	ENST00000452904		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000482538	ENST00000409137		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000482538	ENST00000280295		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
intron-3UTR	ENST00000482538	ENST00000409702		TCGA	RV	KIRC	TCGA-BP-5006-01A	PDE1A	chr2	183291305	-	PPP1R1C	chr2	182926169	+
In-frame	ENST00000477593	ENST00000490337		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000477593	ENST00000389636		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000477593	ENST00000471742		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000477593	ENST00000302490		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000477593	ENST00000389634		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
5CDS-3UTR	ENST00000477593	ENST00000497291		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000544716	ENST00000490337		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000544716	ENST00000389636		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000544716	ENST00000471742		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000544716	ENST00000302490		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000544716	ENST00000389634		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
5CDS-3UTR	ENST00000544716	ENST00000497291		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
Frame-shit	ENST00000289153	ENST00000490337		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
Frame-shit	ENST00000289153	ENST00000389636		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
Frame-shit	ENST00000289153	ENST00000471742		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
Frame-shit	ENST00000289153	ENST00000302490		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
Frame-shit	ENST00000289153	ENST00000389634		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
5CDS-3UTR	ENST00000289153	ENST00000497291		TCGA	RV	KIRC	TCGA-B8-5163-01A	PIK3CB	chr3	138413628	-	KCNAB1	chr3	156175242	+
In-frame	ENST00000322088	ENST00000375587		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
In-frame	ENST00000322088	ENST00000375579		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000322088	ENST00000375576		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000444322	ENST00000375587		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000444322	ENST00000375579		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000444322	ENST00000375576		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
In-frame	ENST00000477989	ENST00000375587		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
In-frame	ENST00000477989	ENST00000375579		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000477989	ENST00000375576		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000462990	ENST00000375587		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000462990	ENST00000375579		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000462990	ENST00000375576		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000473455	ENST00000375587		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000473455	ENST00000375579		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000473455	ENST00000375576		TCGA	RV	KIRC	TCGA-A3-3328-01A	PPP2R1A	chr19	52693427	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000526660	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000316673		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000609795		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000457232		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000443598		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000316099		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000415691		TCGA	RV	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870949	+	HNF4A	chr20	43034698	+
5CDS-intron	ENST00000448507	ENST00000503278		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
5CDS-intron	ENST00000448507	ENST00000425103		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
5CDS-intron	ENST00000448507	ENST00000307659		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
5CDS-intron	ENST00000409757	ENST00000503278		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
5CDS-intron	ENST00000409757	ENST00000425103		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
5CDS-intron	ENST00000409757	ENST00000307659		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000410031	ENST00000503278		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000410031	ENST00000425103		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000410031	ENST00000307659		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000451522	ENST00000503278		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000451522	ENST00000425103		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000451522	ENST00000307659		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000446947	ENST00000503278		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000446947	ENST00000425103		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
intron-intron	ENST00000446947	ENST00000307659		TCGA	RV	KIRC	TCGA-CZ-4866-01A	TBC1D14	chr4	6925838	+	KIAA0232	chr4	6873301	+
5CDS-5UTR	ENST00000259746	ENST00000372014		TCGA	RV	KIRC	TCGA-B0-4836-01A	TMEM63B	chr6	44122182	+	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000323267	ENST00000372014		TCGA	RV	KIRC	TCGA-B0-4836-01A	TMEM63B	chr6	44122182	+	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000527188	ENST00000372014		TCGA	RV	KIRC	TCGA-B0-4836-01A	TMEM63B	chr6	44122182	+	MRPL14	chr6	44084366	-
Frame-shit	ENST00000301923	ENST00000263253		TCGA	RV	KIRC	TCGA-B0-5692-01A	TNRC6B	chr22	40552186	+	EP300	chr22	41572251	+
Frame-shit	ENST00000402203	ENST00000263253		TCGA	RV	KIRC	TCGA-B0-5692-01A	TNRC6B	chr22	40552186	+	EP300	chr22	41572251	+
intron-3CDS	ENST00000454349	ENST00000263253		TCGA	RV	KIRC	TCGA-B0-5692-01A	TNRC6B	chr22	40552186	+	EP300	chr22	41572251	+
intron-3CDS	ENST00000335727	ENST00000263253		TCGA	RV	KIRC	TCGA-B0-5692-01A	TNRC6B	chr22	40552186	+	EP300	chr22	41572251	+
intron-3CDS	ENST00000497559	ENST00000263253		TCGA	RV	KIRC	TCGA-B0-5692-01A	TNRC6B	chr22	40552186	+	EP300	chr22	41572251	+
In-frame	ENST00000513376	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000513376	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000513376	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000513376	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000513376	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000513376	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000513376	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000513376	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000513376	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000513376	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000205214	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000205214	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000205214	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000205214	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000205214	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000205214	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000205214	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000205214	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000205214	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000205214	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-3CDS	ENST00000434343	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-3CDS	ENST00000434343	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-3CDS	ENST00000434343	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-3CDS	ENST00000434343	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-intron	ENST00000434343	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-intron	ENST00000434343	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-intron	ENST00000434343	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-intron	ENST00000434343	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-intron	ENST00000434343	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
intron-intron	ENST00000434343	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000451613	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000451613	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000451613	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000451613	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000451613	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000451613	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000451613	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000451613	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000451613	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000451613	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000602986	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000602986	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000602986	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000602986	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000602986	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000602986	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000602986	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000602986	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000602986	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000602986	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000502617	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000502617	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000502617	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
Frame-shit	ENST00000502617	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000502617	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000502617	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000502617	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000502617	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000502617	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5CDS-intron	ENST00000502617	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-3CDS	ENST00000510762	ENST00000424120		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-3CDS	ENST00000510762	ENST00000413206		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-3CDS	ENST00000510762	ENST00000503292		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-3CDS	ENST00000510762	ENST00000389652		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-intron	ENST00000510762	ENST00000438599		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-intron	ENST00000510762	ENST00000511544		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-intron	ENST00000510762	ENST00000513811		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-intron	ENST00000510762	ENST00000507954		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-intron	ENST00000510762	ENST00000515124		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
5UTR-intron	ENST00000510762	ENST00000503658		TCGA	RV	KIRC	TCGA-CW-5581-01A	AASDH	chr4	57244314	-	CC2D2A	chr4	15564978	+
In-frame	ENST00000374706	ENST00000381196		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000360074		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000537002		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000397617		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000358503		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000397611		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000355233		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000356435		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000540109		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000486161		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000397606		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-5UTR	ENST00000374706	ENST00000463477		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374706	ENST00000471274		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
In-frame	ENST00000265375	ENST00000381196		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000360074		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000537002		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000397617		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000358503		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000397611		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000355233		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000356435		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000540109		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000486161		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000397606		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-5UTR	ENST00000265375	ENST00000463477		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000265375	ENST00000471274		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
In-frame	ENST00000339497	ENST00000381196		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000360074		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000537002		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000397617		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000358503		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000397611		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000355233		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000356435		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000540109		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000486161		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000397606		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-5UTR	ENST00000339497	ENST00000463477		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000339497	ENST00000471274		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
In-frame	ENST00000374704	ENST00000381196		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000360074		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000537002		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000397617		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000358503		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000397611		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000355233		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000356435		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000540109		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000486161		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000397606		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-5UTR	ENST00000374704	ENST00000463477		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000374704	ENST00000471274		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-3CDS	ENST00000492478	ENST00000381196		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000360074		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000537002		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000397617		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000358503		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000397611		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000355233		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000356435		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000540109		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000486161		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000397606		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-5UTR	ENST00000492478	ENST00000463477		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
3UTR-intron	ENST00000492478	ENST00000471274		TCGA	RV	KIRC	TCGA-B0-4688-01A	CCNY	chr10	35819171	+	PTPRD	chr9	10033790	-
5CDS-intron	ENST00000412585	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000412585	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000412585	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000412585	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000412585	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000425848	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000425848	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000425848	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000425848	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000425848	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000450871	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000450871	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000450871	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000450871	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000450871	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000359635	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000359635	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000359635	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000359635	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000359635	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000435618	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000435618	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000435618	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000435618	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000435618	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000421349	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000421349	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000421349	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000421349	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000421349	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	HLA-B	chr6	31321649	-	CLCN3	chr4	170623929	+
Frame-shit	ENST00000254101	ENST00000375337		TCGA	RV	KIRC	TCGA-CZ-5452-01A	PRKAB2	chr1	146643568	-	FBP2	chr9	97349751	-
intron-3CDS	ENST00000496858	ENST00000375337		TCGA	RV	KIRC	TCGA-CZ-5452-01A	PRKAB2	chr1	146643568	-	FBP2	chr9	97349751	-
In-frame	ENST00000425272	ENST00000375337		TCGA	RV	KIRC	TCGA-CZ-5452-01A	PRKAB2	chr1	146643568	-	FBP2	chr9	97349751	-
intron-3CDS	ENST00000414318	ENST00000355072		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-intron	ENST00000414318	ENST00000513806		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-3CDS	ENST00000253692	ENST00000355072		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-intron	ENST00000253692	ENST00000513806		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
5UTR-3CDS	ENST00000429383	ENST00000355072		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
5UTR-intron	ENST00000429383	ENST00000513806		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-3CDS	ENST00000446818	ENST00000355072		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-intron	ENST00000446818	ENST00000513806		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-3CDS	ENST00000429924	ENST00000355072		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
intron-intron	ENST00000429924	ENST00000513806		TCGA	RV	KIRC	TCGA-B0-4696-01A	TBC1D5	chr3	17783973	-	HTT	chr4	3225133	+
5UTR-3CDS	ENST00000313833	ENST00000522455		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000313833	ENST00000521695		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000313833	ENST00000521268		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000313833	ENST00000518566		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000313833	ENST00000517638		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000313833	ENST00000523850		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000313833	ENST00000521376		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000522455		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000521695		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000521268		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000518566		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000517638		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000523850		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000555087	ENST00000521376		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000522455		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000521695		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000521268		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000518566		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000517638		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000523850		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000440021	ENST00000521376		TCGA	RV	KIRC	TCGA-CZ-4865-01A	FBXO34	chr14	55738255	+	RALYL	chr8	85686814	+
Frame-shit	ENST00000377047	ENST00000377067		TCGA	RV	KIRC	TCGA-B0-4706-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	KIRC	TCGA-B0-4706-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000373036	ENST00000373710		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000373036	ENST00000536859		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000373036	ENST00000373709		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
Frame-shit	ENST00000373036	ENST00000536384		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
5CDS-3UTR	ENST00000373036	ENST00000491976		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000468190	ENST00000373710		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000468190	ENST00000536859		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000468190	ENST00000373709		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000468190	ENST00000536384		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000468190	ENST00000491976		TCGA	RV	KIRC	TCGA-B8-5164-01A	MTF1	chr1	38322923	-	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000338244	ENST00000246024		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-5UTR	ENST00000338244	ENST00000530935		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-3CDS	ENST00000379333	ENST00000246024		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-5UTR	ENST00000379333	ENST00000530935		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-3CDS	ENST00000424750	ENST00000246024		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-5UTR	ENST00000424750	ENST00000530935		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-3CDS	ENST00000468355	ENST00000246024		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
5UTR-5UTR	ENST00000468355	ENST00000530935		TCGA	RV	KIRC	TCGA-A3-3328-01A	SLC23A2	chr20	4951439	-	TMX4	chr20	7982188	-
In-frame	ENST00000355683	ENST00000298717		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
Frame-shit	ENST00000355683	ENST00000538267		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
5CDS-intron	ENST00000355683	ENST00000545319		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
In-frame	ENST00000357479	ENST00000298717		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
Frame-shit	ENST00000357479	ENST00000538267		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
5CDS-intron	ENST00000357479	ENST00000545319		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
intron-3CDS	ENST00000366206	ENST00000298717		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
intron-3CDS	ENST00000366206	ENST00000538267		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
intron-intron	ENST00000366206	ENST00000545319		TCGA	RV	KIRC	TCGA-CJ-5677-01A	STRN3	chr14	31404369	-	METTL3	chr14	21972024	-
intron-intron	ENST00000462705	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000471858		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000308611		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000295863		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000490004		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000440122		TCGA	RV	KIRC	TCGA-BP-4346-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3923-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5633-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000476844	ENST00000512453		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-3CDS	ENST00000476844	ENST00000282356		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-intron	ENST00000476844	ENST00000512890		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-3CDS	ENST00000492590	ENST00000512453		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-3CDS	ENST00000492590	ENST00000282356		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-intron	ENST00000492590	ENST00000512890		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
intron-3CDS	ENST00000466788	ENST00000512453		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
intron-3CDS	ENST00000466788	ENST00000282356		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
intron-intron	ENST00000466788	ENST00000512890		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-3CDS	ENST00000468189	ENST00000512453		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-3CDS	ENST00000468189	ENST00000282356		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
5UTR-intron	ENST00000468189	ENST00000512890		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
intron-3CDS	ENST00000341848	ENST00000512453		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
intron-3CDS	ENST00000341848	ENST00000282356		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
intron-intron	ENST00000341848	ENST00000512890		TCGA	RV	KIRC	TCGA-B2-4102-01A	FHIT	chr3	61027719	-	CAMK4	chr5	110679722	+
In-frame	ENST00000412585	ENST00000280326		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000503026		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000515390		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000515676		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412585	ENST00000506600		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000425848	ENST00000280326		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000503026		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000515390		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000515676		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000425848	ENST00000506600		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000450871	ENST00000280326		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000503026		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000515390		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000515676		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000450871	ENST00000506600		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000359635	ENST00000280326		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000503026		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000515390		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000515676		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000359635	ENST00000506600		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000435618	ENST00000280326		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000503026		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000515390		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000515676		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000435618	ENST00000506600		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000421349	ENST00000280326		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000503026		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000515390		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000515676		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
intron-intron	ENST00000421349	ENST00000506600		TCGA	RV	KIRC	TCGA-B0-5706-01A	HLA-B	chr6	31321649	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000476971	ENST00000400454		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PLAC1	chrX	133736081	-	DSCAM	chr21	41561165	-
5UTR-3CDS	ENST00000359237	ENST00000400454		TCGA	RV	KIRC	TCGA-CJ-5681-01A	PLAC1	chrX	133736081	-	DSCAM	chr21	41561165	-
Frame-shit	ENST00000262982	ENST00000371917		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
5CDS-intron	ENST00000262982	ENST00000493140		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
5UTR-3CDS	ENST00000542325	ENST00000371917		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
5UTR-intron	ENST00000542325	ENST00000493140		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
Frame-shit	ENST00000396192	ENST00000371917		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
5CDS-intron	ENST00000396192	ENST00000493140		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
intron-3CDS	ENST00000469700	ENST00000371917		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
intron-intron	ENST00000469700	ENST00000493140		TCGA	RV	KIRC	TCGA-DV-5565-01A	CSE1L	chr20	47675085	+	ARFGEF2	chr20	47648586	+
5UTR-3CDS	ENST00000344337	ENST00000469710		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
5UTR-3CDS	ENST00000344337	ENST00000493101		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
5UTR-3CDS	ENST00000344337	ENST00000264468		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
5UTR-3CDS	ENST00000344337	ENST00000330540		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
5UTR-intron	ENST00000344337	ENST00000483949		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
5UTR-intron	ENST00000344337	ENST00000393627		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
intron-3CDS	ENST00000466923	ENST00000469710		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
intron-3CDS	ENST00000466923	ENST00000493101		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
intron-3CDS	ENST00000466923	ENST00000264468		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
intron-3CDS	ENST00000466923	ENST00000330540		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
intron-intron	ENST00000466923	ENST00000483949		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
intron-intron	ENST00000466923	ENST00000393627		TCGA	RV	KIRC	TCGA-B0-4841-01A	KPNA1	chr3	122233604	-	CD86	chr3	121836895	+
5UTR-3CDS	ENST00000393328	ENST00000240364		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000393328	ENST00000513602		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000393328	ENST00000514018		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-3CDS	ENST00000393331	ENST00000240364		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000393331	ENST00000513602		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000393331	ENST00000514018		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-3CDS	ENST00000347630	ENST00000240364		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000347630	ENST00000513602		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000347630	ENST00000514018		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-3CDS	ENST00000504102	ENST00000240364		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000504102	ENST00000513602		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000504102	ENST00000514018		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
intron-3CDS	ENST00000503676	ENST00000240364		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
intron-5UTR	ENST00000503676	ENST00000513602		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
intron-5UTR	ENST00000503676	ENST00000514018		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-3CDS	ENST00000513080	ENST00000240364		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000513080	ENST00000513602		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
5UTR-5UTR	ENST00000513080	ENST00000514018		TCGA	RV	KIRC	TCGA-B0-4713-01A	SPOP	chr17	47755295	-	FAM117A	chr17	47799956	-
Frame-shit	ENST00000380647	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000380647	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000380647	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
5CDS-intron	ENST00000380647	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000262360	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000262360	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000262360	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
5CDS-intron	ENST00000262360	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000425824	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000425824	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000425824	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
5CDS-intron	ENST00000425824	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000380641	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000380641	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
Frame-shit	ENST00000380641	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
5CDS-intron	ENST00000380641	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
intron-3CDS	ENST00000484374	ENST00000382004		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
intron-3CDS	ENST00000484374	ENST00000358730		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
intron-3CDS	ENST00000484374	ENST00000302303		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
intron-intron	ENST00000484374	ENST00000381984		TCGA	RV	KIRC	TCGA-B0-4696-01A	CNTLN	chr9	17226285	+	RFX3	chr9	3248185	-
In-frame	ENST00000264933	ENST00000310581		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
Frame-shit	ENST00000264933	ENST00000296820		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000264933	ENST00000334602		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000264933	ENST00000508104		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000264933	ENST00000522877		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000505221	ENST00000310581		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
Frame-shit	ENST00000505221	ENST00000296820		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000505221	ENST00000334602		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000505221	ENST00000508104		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000505221	ENST00000522877		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000509581	ENST00000310581		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
Frame-shit	ENST00000509581	ENST00000296820		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000509581	ENST00000334602		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000509581	ENST00000508104		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000509581	ENST00000522877		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000507528	ENST00000310581		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
Frame-shit	ENST00000507528	ENST00000296820		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000507528	ENST00000334602		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000507528	ENST00000508104		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000507528	ENST00000522877		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000310581		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000296820		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000334602		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000511482	ENST00000508104		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
intron-intron	ENST00000511482	ENST00000522877		TCGA	RV	KIRC	TCGA-BP-4991-01A	PDCD6	chr5	272887	+	TERT	chr5	1282739	-
In-frame	ENST00000421306	ENST00000306357		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
In-frame	ENST00000421306	ENST00000574431		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
5CDS-intron	ENST00000421306	ENST00000573373		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
In-frame	ENST00000262483	ENST00000306357		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
In-frame	ENST00000262483	ENST00000574431		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
5CDS-intron	ENST00000262483	ENST00000573373		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
intron-3CDS	ENST00000576664	ENST00000306357		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
intron-3CDS	ENST00000576664	ENST00000574431		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
intron-intron	ENST00000576664	ENST00000573373		TCGA	RV	KIRC	TCGA-BP-4983-01A	PITPNM3	chr17	6406847	-	STX8	chr17	9281970	-
intron-3CDS	ENST00000394752	ENST00000458276		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-intron	ENST00000394752	ENST00000463153		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-3CDS	ENST00000394750	ENST00000458276		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-intron	ENST00000394750	ENST00000463153		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-3CDS	ENST00000358080	ENST00000458276		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-intron	ENST00000358080	ENST00000463153		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-3CDS	ENST00000296295	ENST00000458276		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-intron	ENST00000296295	ENST00000463153		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-3CDS	ENST00000470575	ENST00000458276		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
intron-intron	ENST00000470575	ENST00000463153		TCGA	RV	KIRC	TCGA-CZ-4861-01A	SFMBT1	chr3	53052102	-	ABHD5	chr3	43743707	+
Frame-shit	ENST00000336278	ENST00000314423		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
Frame-shit	ENST00000336278	ENST00000352319		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
Frame-shit	ENST00000336278	ENST00000563094		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
5CDS-intron	ENST00000336278	ENST00000569615		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
3UTR-3CDS	ENST00000528525	ENST00000314423		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
3UTR-3CDS	ENST00000528525	ENST00000352319		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
3UTR-3CDS	ENST00000528525	ENST00000563094		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
3UTR-intron	ENST00000528525	ENST00000569615		TCGA	RV	KIRC	TCGA-BP-4761-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69196986	+
5UTR-3CDS	ENST00000382303	ENST00000276893		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
5UTR-3CDS	ENST00000382303	ENST00000381373		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
5UTR-intron	ENST00000382303	ENST00000485617		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000489369	ENST00000276893		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000489369	ENST00000381373		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-intron	ENST00000489369	ENST00000485617		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000382297	ENST00000276893		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000382297	ENST00000381373		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-intron	ENST00000382297	ENST00000485617		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000382293	ENST00000276893		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000382293	ENST00000381373		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
intron-intron	ENST00000382293	ENST00000485617		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	UHRF2	chr9	6420912	+
5CDS-5UTR	ENST00000449910	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000449910	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000449910	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000449910	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000392480		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000295542		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000423025		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000368419		TCGA	RV	KIRC	TCGA-AS-3777-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-intron	ENST00000546373	ENST00000535593		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000546373	ENST00000542038		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000546373	ENST00000540141		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000546373	ENST00000229314		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000535593		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000542038		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000540141		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000229314		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000535593		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000542038		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000540141		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000229314		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000535593		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000542038		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000540141		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000229314		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
Frame-shit	ENST00000221419	ENST00000249396		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
Frame-shit	ENST00000221419	ENST00000392081		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
Frame-shit	ENST00000221419	ENST00000358931		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
5CDS-intron	ENST00000221419	ENST00000481381		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
5UTR-3CDS	ENST00000600873	ENST00000249396		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
5UTR-3CDS	ENST00000600873	ENST00000392081		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
5UTR-3CDS	ENST00000600873	ENST00000358931		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
5UTR-intron	ENST00000600873	ENST00000481381		TCGA	RV	KIRC	TCGA-B0-5116-01A	HNRNPL	chr19	39337956	-	SIRT2	chr19	39372131	-
intron-3CDS	ENST00000425759	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000425759	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-3CDS	ENST00000292733	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000292733	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-3CDS	ENST00000542773	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000542773	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
In-frame	ENST00000263205	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
5CDS-5UTR	ENST00000263205	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-3CDS	ENST00000406969	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000406969	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-3CDS	ENST00000382974	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000382974	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-3CDS	ENST00000541476	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000541476	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-3CDS	ENST00000478831	ENST00000315869		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
intron-5UTR	ENST00000478831	ENST00000487451		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	MED15	chr22	20929519	+	TFE3	chrX	48891766	-
In-frame	ENST00000361822	ENST00000358777		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000361822	ENST00000403660		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
5CDS-3UTR	ENST00000361822	ENST00000480278		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000450657	ENST00000358777		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000450657	ENST00000403660		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
5CDS-3UTR	ENST00000450657	ENST00000480278		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000421043	ENST00000358777		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000421043	ENST00000403660		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
5CDS-3UTR	ENST00000421043	ENST00000480278		TCGA	RV	KIRC	TCGA-B0-5081-01A	ZNF277	chr7	111846862	+	CEACAM19	chr19	45175868	+
Frame-shit	ENST00000381809	ENST00000453981		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000381809	ENST00000432829		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000381809	ENST00000469391		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000381809	ENST00000382331		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000381809	ENST00000382329		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
5CDS-intron	ENST00000381809	ENST00000493666		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-3CDS	ENST00000359883	ENST00000453981		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-3CDS	ENST00000359883	ENST00000432829		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-3CDS	ENST00000359883	ENST00000469391		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-3CDS	ENST00000359883	ENST00000382331		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-3CDS	ENST00000359883	ENST00000382329		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-intron	ENST00000359883	ENST00000493666		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000447596	ENST00000453981		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000447596	ENST00000432829		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000447596	ENST00000469391		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000447596	ENST00000382331		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
Frame-shit	ENST00000447596	ENST00000382329		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
5CDS-intron	ENST00000447596	ENST00000493666		TCGA	RV	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	379771	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-5635-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000520388	ENST00000294868		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-3CDS	ENST00000520388	ENST00000287713		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-intron	ENST00000520388	ENST00000473046		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
In-frame	ENST00000255189	ENST00000294868		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
In-frame	ENST00000255189	ENST00000287713		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
5CDS-intron	ENST00000255189	ENST00000473046		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-3CDS	ENST00000380311	ENST00000294868		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-3CDS	ENST00000380311	ENST00000287713		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-intron	ENST00000380311	ENST00000473046		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-3CDS	ENST00000540686	ENST00000294868		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-3CDS	ENST00000540686	ENST00000287713		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
intron-intron	ENST00000540686	ENST00000473046		TCGA	RV	KIRC	TCGA-CW-5589-01A	DMGDH	chr5	78301096	-	NMNAT2	chr1	183230438	-
Frame-shit	ENST00000357308	ENST00000410022		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-5UTR	ENST00000357308	ENST00000471185		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-5UTR	ENST00000357308	ENST00000303698		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-5UTR	ENST00000357308	ENST00000394305		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-intron	ENST00000357308	ENST00000462320		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
Frame-shit	ENST00000361060	ENST00000410022		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-5UTR	ENST00000361060	ENST00000471185		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-5UTR	ENST00000361060	ENST00000303698		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-5UTR	ENST00000361060	ENST00000394305		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5CDS-intron	ENST00000361060	ENST00000462320		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5UTR-3CDS	ENST00000494201	ENST00000410022		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5UTR-5UTR	ENST00000494201	ENST00000471185		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5UTR-5UTR	ENST00000494201	ENST00000303698		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5UTR-5UTR	ENST00000494201	ENST00000394305		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5UTR-intron	ENST00000494201	ENST00000462320		TCGA	RV	KIRC	TCGA-B0-5701-01A	GFPT1	chr2	69614197	-	NFU1	chr2	69646736	-
5UTR-intron	ENST00000380345	ENST00000377791		TCGA	RV	KIRC	TCGA-CJ-5681-01A	LHFPL2	chr5	77928087	-	HIST1H2AC	chr6	26138282	+
5UTR-3UTR	ENST00000380345	ENST00000602637		TCGA	RV	KIRC	TCGA-CJ-5681-01A	LHFPL2	chr5	77928087	-	HIST1H2AC	chr6	26138282	+
intron-intron	ENST00000515007	ENST00000377791		TCGA	RV	KIRC	TCGA-CJ-5681-01A	LHFPL2	chr5	77928087	-	HIST1H2AC	chr6	26138282	+
intron-3UTR	ENST00000515007	ENST00000602637		TCGA	RV	KIRC	TCGA-CJ-5681-01A	LHFPL2	chr5	77928087	-	HIST1H2AC	chr6	26138282	+
5UTR-intron	ENST00000515349	ENST00000377791		TCGA	RV	KIRC	TCGA-CJ-5681-01A	LHFPL2	chr5	77928087	-	HIST1H2AC	chr6	26138282	+
5UTR-3UTR	ENST00000515349	ENST00000602637		TCGA	RV	KIRC	TCGA-CJ-5681-01A	LHFPL2	chr5	77928087	-	HIST1H2AC	chr6	26138282	+
In-frame	ENST00000315869	ENST00000425759		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
In-frame	ENST00000315869	ENST00000292733		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5CDS-intron	ENST00000315869	ENST00000542773		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5CDS-intron	ENST00000315869	ENST00000263205		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5CDS-intron	ENST00000315869	ENST00000406969		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5CDS-intron	ENST00000315869	ENST00000382974		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5CDS-intron	ENST00000315869	ENST00000541476		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5CDS-intron	ENST00000315869	ENST00000478831		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-3CDS	ENST00000487451	ENST00000425759		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-3CDS	ENST00000487451	ENST00000292733		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000487451	ENST00000542773		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000487451	ENST00000263205		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000487451	ENST00000406969		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000487451	ENST00000382974		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000487451	ENST00000541476		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
5UTR-intron	ENST00000487451	ENST00000478831		TCGA	RV	KIRC	TCGA-6D-AA2E-01A	TFE3	chrX	48895535	-	MED15	chr22	20936898	+
Frame-shit	ENST00000330490	ENST00000370314		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
Frame-shit	ENST00000330490	ENST00000535043		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
5CDS-intron	ENST00000330490	ENST00000497894		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
Frame-shit	ENST00000354333	ENST00000370314		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
Frame-shit	ENST00000354333	ENST00000535043		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
5CDS-intron	ENST00000354333	ENST00000497894		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
3UTR-3CDS	ENST00000465978	ENST00000370314		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
3UTR-3CDS	ENST00000465978	ENST00000535043		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
3UTR-intron	ENST00000465978	ENST00000497894		TCGA	RV	KIRC	TCGA-CJ-5681-01A	C21orf90	chr21	45937718	+	GABRA3	chrX	151453207	-
In-frame	ENST00000320895	ENST00000510636		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000320895	ENST00000261944		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000320895	ENST00000506348		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000507807	ENST00000510636		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000507807	ENST00000261944		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000507807	ENST00000506348		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000320927	ENST00000510636		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000320927	ENST00000261944		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
In-frame	ENST00000320927	ENST00000506348		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
intron-3CDS	ENST00000506641	ENST00000510636		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
intron-3CDS	ENST00000506641	ENST00000261944		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
intron-3CDS	ENST00000506641	ENST00000506348		TCGA	RV	KIRC	TCGA-BP-5175-01A	CLPTM1L	chr5	1341786	-	CDHR2	chr5	176008344	+
Frame-shit	ENST00000283943	ENST00000295190		TCGA	RV	KIRC	TCGA-CJ-4923-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000389045	ENST00000295190		TCGA	RV	KIRC	TCGA-CJ-4923-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000389044	ENST00000295190		TCGA	RV	KIRC	TCGA-CJ-4923-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000543084	ENST00000295190		TCGA	RV	KIRC	TCGA-CJ-4923-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000409677	ENST00000295190		TCGA	RV	KIRC	TCGA-CJ-4923-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000544301	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000544301	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000544301	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000224237	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000224237	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000224237	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000485947	ENST00000263593		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
intron-intron	ENST00000485947	ENST00000545756		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
intron-intron	ENST00000485947	ENST00000525730		TCGA	RV	KIRC	TCGA-A3-3317-01A	VIM	chr10	17279584	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000540367	ENST00000300060		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000540367	ENST00000558177		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-3CDS	ENST00000376618	ENST00000300060		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-intron	ENST00000376618	ENST00000558177		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-3CDS	ENST00000265641	ENST00000300060		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-intron	ENST00000265641	ENST00000558177		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-3CDS	ENST00000539743	ENST00000300060		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000539743	ENST00000558177		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-3CDS	ENST00000537756	ENST00000300060		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000537756	ENST00000558177		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-3CDS	ENST00000538994	ENST00000300060		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000538994	ENST00000558177		TCGA	RV	KIRC	TCGA-AS-3777-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
Frame-shit	ENST00000275016	ENST00000293760		TCGA	RV	KIRC	TCGA-A3-3313-01A	CYP39A1	chr6	46620143	-	LEMD2	chr6	33748930	-
5CDS-5UTR	ENST00000275016	ENST00000508327		TCGA	RV	KIRC	TCGA-A3-3313-01A	CYP39A1	chr6	46620143	-	LEMD2	chr6	33748930	-
5CDS-5UTR	ENST00000275016	ENST00000502643		TCGA	RV	KIRC	TCGA-A3-3313-01A	CYP39A1	chr6	46620143	-	LEMD2	chr6	33748930	-
intron-3CDS	ENST00000489657	ENST00000293760		TCGA	RV	KIRC	TCGA-A3-3313-01A	CYP39A1	chr6	46620143	-	LEMD2	chr6	33748930	-
intron-5UTR	ENST00000489657	ENST00000508327		TCGA	RV	KIRC	TCGA-A3-3313-01A	CYP39A1	chr6	46620143	-	LEMD2	chr6	33748930	-
intron-5UTR	ENST00000489657	ENST00000502643		TCGA	RV	KIRC	TCGA-A3-3313-01A	CYP39A1	chr6	46620143	-	LEMD2	chr6	33748930	-
Frame-shit	ENST00000453981	ENST00000539801		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000453981	ENST00000381652		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000453981	ENST00000544510		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
5CDS-intron	ENST00000453981	ENST00000487310		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000432829	ENST00000539801		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000432829	ENST00000381652		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000432829	ENST00000544510		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
5CDS-intron	ENST00000432829	ENST00000487310		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000469391	ENST00000539801		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000469391	ENST00000381652		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
Frame-shit	ENST00000469391	ENST00000544510		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
5CDS-intron	ENST00000469391	ENST00000487310		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000382331	ENST00000539801		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000382331	ENST00000381652		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000382331	ENST00000544510		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-intron	ENST00000382331	ENST00000487310		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000382329	ENST00000539801		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000382329	ENST00000381652		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000382329	ENST00000544510		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-intron	ENST00000382329	ENST00000487310		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000493666	ENST00000539801		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000493666	ENST00000381652		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-3CDS	ENST00000493666	ENST00000544510		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
intron-intron	ENST00000493666	ENST00000487310		TCGA	RV	KIRC	TCGA-BP-4983-01A	DOCK8	chr9	340321	+	JAK2	chr9	5050686	+
5UTR-3CDS	ENST00000418115	ENST00000273598		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-3CDS	ENST00000418115	ENST00000436744		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-5UTR	ENST00000418115	ENST00000422593		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-3CDS	ENST00000454011	ENST00000273598		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-3CDS	ENST00000454011	ENST00000436744		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-5UTR	ENST00000454011	ENST00000422593		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-3CDS	ENST00000422781	ENST00000273598		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-3CDS	ENST00000422781	ENST00000436744		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
5UTR-5UTR	ENST00000422781	ENST00000422593		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
intron-3CDS	ENST00000265538	ENST00000273598		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
intron-3CDS	ENST00000265538	ENST00000436744		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
intron-5UTR	ENST00000265538	ENST00000422593		TCGA	RV	KIRC	TCGA-A3-3387-01A	RHOA	chr3	49449253	-	NICN1	chr3	49463861	-
In-frame	ENST00000441669	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000441669	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000441669	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000441669	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
In-frame	ENST00000316891	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000316891	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000316891	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000316891	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
In-frame	ENST00000372818	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000372818	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000372818	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000372818	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-3CDS	ENST00000491865	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000491865	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000491865	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000491865	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-3CDS	ENST00000541099	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000541099	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000541099	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000541099	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-3CDS	ENST00000537440	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000537440	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000537440	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000537440	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-3CDS	ENST00000537223	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000537223	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000537223	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000537223	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-3CDS	ENST00000545233	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000545233	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000545233	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5UTR-intron	ENST00000545233	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
In-frame	ENST00000544981	ENST00000372811		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000544981	ENST00000420632		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000544981	ENST00000372809		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000544981	ENST00000480630		TCGA	RV	KIRC	TCGA-EU-5906-01A	TRIT1	chr1	40348990	-	MFSD2A	chr1	40422759	+
Frame-shit	ENST00000262809	ENST00000439660		TCGA	RV	KIRC	TCGA-B0-4945-01A	ELL	chr19	18576222	-	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000262809	ENST00000578573		TCGA	RV	KIRC	TCGA-B0-4945-01A	ELL	chr19	18576222	-	CISD3	chr17	36887013	+
Frame-shit	ENST00000596124	ENST00000439660		TCGA	RV	KIRC	TCGA-B0-4945-01A	ELL	chr19	18576222	-	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000596124	ENST00000578573		TCGA	RV	KIRC	TCGA-B0-4945-01A	ELL	chr19	18576222	-	CISD3	chr17	36887013	+
In-frame	ENST00000395925	ENST00000309930		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
In-frame	ENST00000395925	ENST00000401647		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
In-frame	ENST00000395925	ENST00000335693		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000395925	ENST00000464028		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000395925	ENST00000540834		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
intron-3CDS	ENST00000479210	ENST00000309930		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
intron-3CDS	ENST00000479210	ENST00000401647		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
intron-3CDS	ENST00000479210	ENST00000335693		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
intron-intron	ENST00000479210	ENST00000464028		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
intron-intron	ENST00000479210	ENST00000540834		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
In-frame	ENST00000437480	ENST00000309930		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
In-frame	ENST00000437480	ENST00000401647		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
In-frame	ENST00000437480	ENST00000335693		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000437480	ENST00000464028		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000437480	ENST00000540834		TCGA	RV	KIRC	TCGA-CJ-5683-01A	GLI3	chr7	42262729	-	C7orf10	chr7	40789033	+
Frame-shit	ENST00000325722	ENST00000373555		TCGA	RV	KIRC	TCGA-DV-5576-01A	KIAA0319L	chr1	35972213	-	GOLGA1	chr9	127652757	-
intron-3CDS	ENST00000373266	ENST00000373555		TCGA	RV	KIRC	TCGA-DV-5576-01A	KIAA0319L	chr1	35972213	-	GOLGA1	chr9	127652757	-
intron-3CDS	ENST00000485551	ENST00000373555		TCGA	RV	KIRC	TCGA-DV-5576-01A	KIAA0319L	chr1	35972213	-	GOLGA1	chr9	127652757	-
Frame-shit	ENST00000283415	ENST00000230895		TCGA	RV	KIRC	TCGA-BP-5175-01A	LPCAT1	chr5	1523825	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000283415	ENST00000432074		TCGA	RV	KIRC	TCGA-BP-5175-01A	LPCAT1	chr5	1523825	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000283415	ENST00000510546		TCGA	RV	KIRC	TCGA-BP-5175-01A	LPCAT1	chr5	1523825	-	DAP	chr5	10683683	-
intron-3CDS	ENST00000503252	ENST00000230895		TCGA	RV	KIRC	TCGA-BP-5175-01A	LPCAT1	chr5	1523825	-	DAP	chr5	10683683	-
intron-intron	ENST00000503252	ENST00000432074		TCGA	RV	KIRC	TCGA-BP-5175-01A	LPCAT1	chr5	1523825	-	DAP	chr5	10683683	-
intron-intron	ENST00000503252	ENST00000510546		TCGA	RV	KIRC	TCGA-BP-5175-01A	LPCAT1	chr5	1523825	-	DAP	chr5	10683683	-
intron-intron	ENST00000381086	ENST00000513761		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381086	ENST00000347613		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381086	ENST00000360642		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381086	ENST00000504131		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381086	ENST00000506924		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000275521	ENST00000513761		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000275521	ENST00000347613		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000275521	ENST00000360642		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000275521	ENST00000504131		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000275521	ENST00000506924		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381083	ENST00000513761		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381083	ENST00000347613		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381083	ENST00000360642		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381083	ENST00000504131		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000381083	ENST00000506924		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000465642	ENST00000513761		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000465642	ENST00000347613		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000465642	ENST00000360642		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000465642	ENST00000504131		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000465642	ENST00000506924		TCGA	RV	KIRC	TCGA-CJ-6032-01A	IGFBP3	chr7	45951958	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000409419	ENST00000311028		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000409419	ENST00000395923		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000409419	ENST00000220931		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000409419	ENST00000521599		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000409419	ENST00000522951		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000409419	ENST00000519508		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000409419	ENST00000521371		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000311028		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000395923		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000220931		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000521599		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000522951		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000519508		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409587	ENST00000521371		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000311028		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000395923		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000220931		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000521599		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000522951		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000519508		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
intron-intron	ENST00000594085	ENST00000521371		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000311028		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000395923		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000220931		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000521599		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000522951		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000519508		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409735	ENST00000521371		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000311028		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000395923		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000220931		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000521599		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000522951		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000519508		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000356508	ENST00000521371		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000311028		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000395923		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000220931		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000521599		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000522951		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000519508		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000409281	ENST00000521371		TCGA	RV	KIRC	TCGA-A3-3374-01A	PLD3	chr19	40884390	+	NCALD	chr8	102813898	-
In-frame	ENST00000407559	ENST00000262178		TCGA	RV	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158684024	+	VIPR2	chr7	158851269	-
In-frame	ENST00000407559	ENST00000377633		TCGA	RV	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158684024	+	VIPR2	chr7	158851269	-
In-frame	ENST00000407559	ENST00000402066		TCGA	RV	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158684024	+	VIPR2	chr7	158851269	-
5CDS-intron	ENST00000407559	ENST00000421760		TCGA	RV	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158684024	+	VIPR2	chr7	158851269	-
5UTR-3UTR	ENST00000382303	ENST00000344545		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
5UTR-3UTR	ENST00000382303	ENST00000381428		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
5UTR-intron	ENST00000382303	ENST00000314556		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-3UTR	ENST00000489369	ENST00000344545		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-3UTR	ENST00000489369	ENST00000381428		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-intron	ENST00000489369	ENST00000314556		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-3UTR	ENST00000382297	ENST00000344545		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-3UTR	ENST00000382297	ENST00000381428		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-intron	ENST00000382297	ENST00000314556		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-3UTR	ENST00000382293	ENST00000344545		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-3UTR	ENST00000382293	ENST00000381428		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
intron-intron	ENST00000382293	ENST00000314556		TCGA	RV	KIRC	TCGA-BP-4983-01A	KANK1	chr9	540667	+	TPD52L3	chr9	6330182	+
Frame-shit	ENST00000283943	ENST00000295190		TCGA	RV	KIRC	TCGA-BP-4977-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000389045	ENST00000295190		TCGA	RV	KIRC	TCGA-BP-4977-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000389044	ENST00000295190		TCGA	RV	KIRC	TCGA-BP-4977-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000543084	ENST00000295190		TCGA	RV	KIRC	TCGA-BP-4977-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000409677	ENST00000295190		TCGA	RV	KIRC	TCGA-BP-4977-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	KIRC	TCGA-B2-3924-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-5UTR	ENST00000377791	ENST00000380345		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HIST1H2AC	chr6	26124977	+	LHFPL2	chr5	77860694	-
intron-intron	ENST00000377791	ENST00000515007		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HIST1H2AC	chr6	26124977	+	LHFPL2	chr5	77860694	-
intron-intron	ENST00000377791	ENST00000515349		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HIST1H2AC	chr6	26124977	+	LHFPL2	chr5	77860694	-
intron-5UTR	ENST00000602637	ENST00000380345		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HIST1H2AC	chr6	26124977	+	LHFPL2	chr5	77860694	-
intron-intron	ENST00000602637	ENST00000515007		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HIST1H2AC	chr6	26124977	+	LHFPL2	chr5	77860694	-
intron-intron	ENST00000602637	ENST00000515349		TCGA	RV	KIRC	TCGA-CJ-5681-01A	HIST1H2AC	chr6	26124977	+	LHFPL2	chr5	77860694	-
3UTR-3CDS	ENST00000505350	ENST00000273450		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
3UTR-5UTR	ENST00000505350	ENST00000472186		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
3UTR-5UTR	ENST00000505350	ENST00000452905		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
3UTR-5UTR	ENST00000505350	ENST00000393434		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
3UTR-5UTR	ENST00000505350	ENST00000393431		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
3UTR-intron	ENST00000505350	ENST00000413612		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
3UTR-5UTR	ENST00000505350	ENST00000455064		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-3CDS	ENST00000457016	ENST00000273450		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000457016	ENST00000472186		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000457016	ENST00000452905		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000457016	ENST00000393434		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000457016	ENST00000393431		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-intron	ENST00000457016	ENST00000413612		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000457016	ENST00000455064		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-3CDS	ENST00000257430	ENST00000273450		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000257430	ENST00000472186		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000257430	ENST00000452905		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000257430	ENST00000393434		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000257430	ENST00000393431		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000257430	ENST00000413612		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000257430	ENST00000455064		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-3CDS	ENST00000508376	ENST00000273450		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508376	ENST00000472186		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508376	ENST00000452905		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508376	ENST00000393434		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508376	ENST00000393431		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000508376	ENST00000413612		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508376	ENST00000455064		TCGA	RV	KIRC	TCGA-CJ-4886-01A	APC	chr5	112043579	+	ALDH1L1	chr3	125879845	-
Frame-shit	ENST00000400274	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000400274	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000400274	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000400274	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000427143	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000427143	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000427143	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000427143	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000318711	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000318711	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000318711	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000318711	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000417564	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000417564	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000417564	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000417564	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000457905	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000457905	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000457905	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000457905	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000466639	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000466639	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000466639	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000466639	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000435722	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000435722	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
Frame-shit	ENST00000435722	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000435722	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
intron-3CDS	ENST00000479654	ENST00000245838		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
intron-3CDS	ENST00000479654	ENST00000355725		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
intron-3CDS	ENST00000479654	ENST00000491737		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
intron-intron	ENST00000479654	ENST00000497887		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DIP2A	chr21	47879135	+	THOC2	chrX	122802165	-
intron-intron	ENST00000252590	ENST00000513761		TCGA	RV	KIRC	TCGA-AK-3444-01A	PLVAP	chr19	17462264	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000252590	ENST00000347613		TCGA	RV	KIRC	TCGA-AK-3444-01A	PLVAP	chr19	17462264	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000252590	ENST00000360642		TCGA	RV	KIRC	TCGA-AK-3444-01A	PLVAP	chr19	17462264	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000252590	ENST00000504131		TCGA	RV	KIRC	TCGA-AK-3444-01A	PLVAP	chr19	17462264	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000252590	ENST00000506924		TCGA	RV	KIRC	TCGA-AK-3444-01A	PLVAP	chr19	17462264	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394936	ENST00000264818		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394936	ENST00000524462		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394936	ENST00000525621		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394936	ENST00000529370		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394936	ENST00000529422		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394934	ENST00000264818		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394934	ENST00000524462		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394934	ENST00000525621		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394934	ENST00000529370		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000394934	ENST00000529422		TCGA	RV	KIRC	TCGA-CZ-5454-01A	PSAP	chr10	73576058	-	TYK2	chr19	10491352	-
5CDS-5UTR	ENST00000275015	ENST00000393844		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000313248		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000427851		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000371740		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000371755		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000371731		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000393841		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000371713		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000371724		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-5UTR	ENST00000275015	ENST00000371708		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
5CDS-intron	ENST00000275015	ENST00000472176		TCGA	RV	KIRC	TCGA-A3-3311-01A	NFKBIE	chr6	44227780	-	SLC29A1	chr6	44194997	+
intron-intron	ENST00000532456	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000532456	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000539648	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000528499	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000263574	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000345598	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000338167	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000278756	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000309364		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000359180		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000317589		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000355397		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000429027		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000539256		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000299275		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000538714		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000543806		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000424268		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000540972		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000543137	ENST00000510738		TCGA	RV	KIRC	TCGA-A3-3319-01A	APLP2	chr11	130014699	+	PLEKHA5	chr12	19441012	+
In-frame	ENST00000395965	ENST00000476844		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
In-frame	ENST00000395965	ENST00000492590		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000395965	ENST00000466788		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000395965	ENST00000468189		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000395965	ENST00000341848		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000505869	ENST00000476844		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000505869	ENST00000492590		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000505869	ENST00000466788		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000505869	ENST00000468189		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000505869	ENST00000341848		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000509739	ENST00000476844		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000509739	ENST00000492590		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000509739	ENST00000466788		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000509739	ENST00000468189		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000509739	ENST00000341848		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000509163	ENST00000476844		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000509163	ENST00000492590		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000509163	ENST00000466788		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000509163	ENST00000468189		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000509163	ENST00000341848		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000504768	ENST00000476844		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000504768	ENST00000492590		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000504768	ENST00000466788		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000504768	ENST00000468189		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000504768	ENST00000341848		TCGA	RV	KIRC	TCGA-B2-4101-01A	FAM172A	chr5	93294482	-	FHIT	chr3	59738047	-
5UTR-intron	ENST00000377897	ENST00000311713		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000377897	ENST00000278856		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000529106		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000525239		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000525752		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000377897	ENST00000540620		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000311713		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000278856		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000529106		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000525239		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000525752		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000540620		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000311713		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000278856		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000529106		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000525239		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000525752		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000540620		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000311713		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000278856		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000529106		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000525239		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000525752		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000540620		TCGA	RV	KIRC	TCGA-BP-4331-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
In-frame	ENST00000371117	ENST00000330430		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000371117	ENST00000371374		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000371117	ENST00000306764		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000371117	ENST00000405162		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000340994	ENST00000330430		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000340994	ENST00000371374		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000340994	ENST00000306764		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
In-frame	ENST00000340994	ENST00000405162		TCGA	RV	KIRC	TCGA-A3-3313-01A	PKHD1	chr6	51695659	-	RCAN2	chr6	46216633	-
intron-intron	ENST00000504734	ENST00000270189		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000504734	ENST00000429089		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000504734	ENST00000220809		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000504734	ENST00000352041		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000504734	ENST00000519510		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000504734	ENST00000429710		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000504734	ENST00000524009		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000270189		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000429089		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000220809		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000352041		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000519510		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000429710		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000415618	ENST00000524009		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000270189		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000429089		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000220809		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000352041		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000519510		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000429710		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000452673	ENST00000524009		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000270189		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000429089		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000220809		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000352041		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000519510		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000429710		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000247461	ENST00000524009		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000270189		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000429089		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000220809		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000352041		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000519510		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000429710		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000512607	ENST00000524009		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000270189		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000429089		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000220809		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000352041		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000519510		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000429710		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
intron-intron	ENST00000503126	ENST00000524009		TCGA	RV	KIRC	TCGA-AK-3444-01A	CANX	chr5	179157926	+	PLAT	chr8	42051245	-
Frame-shit	ENST00000280527	ENST00000305249		TCGA	RV	KIRC	TCGA-CJ-5681-01A	CRIM1	chr2	36749456	+	TACR1	chr2	75347894	-
Frame-shit	ENST00000280527	ENST00000409848		TCGA	RV	KIRC	TCGA-CJ-5681-01A	CRIM1	chr2	36749456	+	TACR1	chr2	75347894	-
Frame-shit	ENST00000280527	ENST00000497764		TCGA	RV	KIRC	TCGA-CJ-5681-01A	CRIM1	chr2	36749456	+	TACR1	chr2	75347894	-
intron-3CDS	ENST00000473403	ENST00000305249		TCGA	RV	KIRC	TCGA-CJ-5681-01A	CRIM1	chr2	36749456	+	TACR1	chr2	75347894	-
intron-3CDS	ENST00000473403	ENST00000409848		TCGA	RV	KIRC	TCGA-CJ-5681-01A	CRIM1	chr2	36749456	+	TACR1	chr2	75347894	-
intron-3CDS	ENST00000473403	ENST00000497764		TCGA	RV	KIRC	TCGA-CJ-5681-01A	CRIM1	chr2	36749456	+	TACR1	chr2	75347894	-
5CDS-intron	ENST00000400337	ENST00000460734		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
5CDS-5UTR	ENST00000400337	ENST00000539173		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
5CDS-5UTR	ENST00000400337	ENST00000437626		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
5CDS-5UTR	ENST00000400337	ENST00000389863		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
5CDS-5UTR	ENST00000400337	ENST00000348831		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
5CDS-intron	ENST00000400337	ENST00000360697		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-intron	ENST00000355480	ENST00000460734		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000355480	ENST00000539173		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000355480	ENST00000437626		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000355480	ENST00000389863		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000355480	ENST00000348831		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-intron	ENST00000355480	ENST00000360697		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-intron	ENST00000359759	ENST00000460734		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000359759	ENST00000539173		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000359759	ENST00000437626		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000359759	ENST00000389863		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000359759	ENST00000348831		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-intron	ENST00000359759	ENST00000360697		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-intron	ENST00000459895	ENST00000460734		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000459895	ENST00000539173		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000459895	ENST00000437626		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000459895	ENST00000389863		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-5UTR	ENST00000459895	ENST00000348831		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
intron-intron	ENST00000459895	ENST00000360697		TCGA	RV	KIRC	TCGA-CJ-4635-01A	COL18A1	chr21	46825388	+	ADARB1	chr21	46591525	+
In-frame	ENST00000323851	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000323851	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000323851	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000323851	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000323851	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
In-frame	ENST00000354944	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000354944	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000354944	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000354944	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000354944	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-3CDS	ENST00000521414	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000521414	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000521414	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000521414	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000521414	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5UTR-3CDS	ENST00000537882	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5UTR-5UTR	ENST00000537882	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5UTR-5UTR	ENST00000537882	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5UTR-5UTR	ENST00000537882	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5UTR-5UTR	ENST00000537882	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
Frame-shit	ENST00000414097	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000414097	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000414097	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000414097	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-5UTR	ENST00000414097	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-3CDS	ENST00000518176	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518176	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518176	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518176	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518176	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-3CDS	ENST00000522476	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000522476	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000522476	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000522476	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000522476	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-3CDS	ENST00000518066	ENST00000399640		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518066	ENST00000319914		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518066	ENST00000521180		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518066	ENST00000522652		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
intron-5UTR	ENST00000518066	ENST00000519435		TCGA	RV	KIRC	TCGA-B0-5400-01A	NDRG1	chr8	134296492	-	ST3GAL1	chr8	134488843	-
5CDS-intron	ENST00000413379	ENST00000591997		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000413379	ENST00000251289		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000413379	ENST00000587001		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000540850	ENST00000591997		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000540850	ENST00000251289		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000540850	ENST00000587001		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
intron-intron	ENST00000598840	ENST00000591997		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
intron-intron	ENST00000598840	ENST00000251289		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
intron-intron	ENST00000598840	ENST00000587001		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000270225	ENST00000591997		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000270225	ENST00000251289		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000270225	ENST00000587001		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000392776	ENST00000591997		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000392776	ENST00000251289		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
5CDS-intron	ENST00000392776	ENST00000587001		TCGA	RV	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994212	+
intron-intron	ENST00000379056	ENST00000311028		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000395923		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000220931		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000521599		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000522951		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000519508		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379056	ENST00000521371		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000311028		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000395923		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000220931		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000521599		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000522951		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000519508		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000529421	ENST00000521371		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000311028		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000395923		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000220931		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000521599		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000522951		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000519508		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
5CDS-intron	ENST00000530705	ENST00000521371		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000311028		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000395923		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000220931		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000521599		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000522951		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000519508		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379060	ENST00000521371		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000311028		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000395923		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000220931		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000521599		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000522951		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000519508		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000379055	ENST00000521371		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000311028		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000395923		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000220931		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000521599		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000522951		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000519508		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
intron-intron	ENST00000309246	ENST00000521371		TCGA	RV	KIRC	TCGA-BP-4994-01A	TPT1	chr13	45911313	-	NCALD	chr8	102813898	-
In-frame	ENST00000374023	ENST00000370888		TCGA	RV	KIRC	TCGA-A3-3313-01A	C6orf106	chr6	34614378	-	LRRC1	chr6	53785423	+
5CDS-intron	ENST00000374023	ENST00000370882		TCGA	RV	KIRC	TCGA-A3-3313-01A	C6orf106	chr6	34614378	-	LRRC1	chr6	53785423	+
intron-3CDS	ENST00000374026	ENST00000370888		TCGA	RV	KIRC	TCGA-A3-3313-01A	C6orf106	chr6	34614378	-	LRRC1	chr6	53785423	+
intron-intron	ENST00000374026	ENST00000370882		TCGA	RV	KIRC	TCGA-A3-3313-01A	C6orf106	chr6	34614378	-	LRRC1	chr6	53785423	+
Frame-shit	ENST00000374021	ENST00000370888		TCGA	RV	KIRC	TCGA-A3-3313-01A	C6orf106	chr6	34614378	-	LRRC1	chr6	53785423	+
5CDS-intron	ENST00000374021	ENST00000370882		TCGA	RV	KIRC	TCGA-A3-3313-01A	C6orf106	chr6	34614378	-	LRRC1	chr6	53785423	+
5CDS-5UTR	ENST00000359314	ENST00000394253		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000359314	ENST00000373010		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000359314	ENST00000373006		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
5CDS-5UTR	ENST00000359314	ENST00000297229		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
5CDS-intron	ENST00000359314	ENST00000373009		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000486693	ENST00000394253		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000486693	ENST00000373010		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000486693	ENST00000373006		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000486693	ENST00000297229		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
intron-intron	ENST00000486693	ENST00000373009		TCGA	RV	KIRC	TCGA-A3-3313-01A	CD2AP	chr6	47471176	+	USP49	chr6	41774749	-
Frame-shit	ENST00000425013	ENST00000199389		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
Frame-shit	ENST00000425013	ENST00000536084		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
5CDS-intron	ENST00000425013	ENST00000495565		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
Frame-shit	ENST00000389902	ENST00000199389		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
Frame-shit	ENST00000389902	ENST00000536084		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
5CDS-intron	ENST00000389902	ENST00000495565		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
intron-3CDS	ENST00000469375	ENST00000199389		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
intron-3CDS	ENST00000469375	ENST00000536084		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
intron-intron	ENST00000469375	ENST00000495565		TCGA	RV	KIRC	TCGA-DV-5576-01A	RNF216	chr7	5756347	-	EIF2AK1	chr7	6064432	-
3UTR-intron	ENST00000479141	ENST00000354817		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000479141	ENST00000527202		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000479141	ENST00000532502		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000371766	ENST00000354817		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000371766	ENST00000527202		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000371766	ENST00000532502		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000277508	ENST00000354817		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000277508	ENST00000527202		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000277508	ENST00000532502		TCGA	RV	KIRC	TCGA-B0-5706-01A	PAEP	chr9	138458622	+	FAR1	chr11	13744912	+
In-frame	ENST00000397269	ENST00000378076		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
5CDS-intron	ENST00000397269	ENST00000477064		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
In-frame	ENST00000362091	ENST00000378076		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
5CDS-intron	ENST00000362091	ENST00000477064		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
intron-3CDS	ENST00000470089	ENST00000378076		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
intron-intron	ENST00000470089	ENST00000477064		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
In-frame	ENST00000379999	ENST00000378076		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
5CDS-intron	ENST00000379999	ENST00000477064		TCGA	RV	KIRC	TCGA-B0-4688-01A	FBXO18	chr10	5960441	+	ITGA8	chr10	15648421	-
5CDS-intron	ENST00000544301	ENST00000452533		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000553257		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000549701		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000358214		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000548671		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000266481		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000547312		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000414834		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000544301	ENST00000381000		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000452533		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000553257		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000549701		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000358214		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000548671		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000266481		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000547312		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000414834		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000224237	ENST00000381000		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000452533		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000553257		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000549701		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000358214		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000548671		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000266481		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000547312		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000414834		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000485947	ENST00000381000		TCGA	RV	KIRC	TCGA-B0-5399-01A	VIM	chr10	17279584	+	DNM1L	chr12	32905677	+
Frame-shit	ENST00000302475	ENST00000295901		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
Frame-shit	ENST00000302475	ENST00000492933		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
Frame-shit	ENST00000302475	ENST00000394431		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
Frame-shit	ENST00000302475	ENST00000482510		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
5UTR-3CDS	ENST00000514701	ENST00000295901		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
5UTR-3CDS	ENST00000514701	ENST00000492933		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
5UTR-3CDS	ENST00000514701	ENST00000394431		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
5UTR-3CDS	ENST00000514701	ENST00000482510		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000515367	ENST00000295901		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000515367	ENST00000492933		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000515367	ENST00000394431		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000515367	ENST00000482510		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000408903	ENST00000295901		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000408903	ENST00000492933		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000408903	ENST00000394431		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
intron-3CDS	ENST00000408903	ENST00000482510		TCGA	RV	KIRC	TCGA-BP-4968-01A	MCC	chr5	112630026	-	PSMD6	chr3	63996631	-
Frame-shit	ENST00000221930	ENST00000269967		TCGA	RV	KIRC	TCGA-BP-4761-01A	TGFB1	chr19	41847788	-	CCDC97	chr19	41828500	+
Frame-shit	ENST00000343304	ENST00000517870		TCGA	RV	KIRC	TCGA-CZ-4863-01A	LRRC41	chr1	46763235	-	FAM159A	chr1	53108535	+
5CDS-3UTR	ENST00000343304	ENST00000401050		TCGA	RV	KIRC	TCGA-CZ-4863-01A	LRRC41	chr1	46763235	-	FAM159A	chr1	53108535	+
5UTR-3CDS	ENST00000472710	ENST00000517870		TCGA	RV	KIRC	TCGA-CZ-4863-01A	LRRC41	chr1	46763235	-	FAM159A	chr1	53108535	+
5UTR-3UTR	ENST00000472710	ENST00000401050		TCGA	RV	KIRC	TCGA-CZ-4863-01A	LRRC41	chr1	46763235	-	FAM159A	chr1	53108535	+
intron-3CDS	ENST00000563763	ENST00000262467		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000345221		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000269280		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000572272		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000354411		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000577119		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
intron-intron	ENST00000563763	ENST00000571307		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000574946	ENST00000262467		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000345221		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000269280		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000572272		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000354411		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000577119		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574946	ENST00000571307		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000573634	ENST00000262467		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000345221		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000269280		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000572272		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000354411		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000577119		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000573634	ENST00000571307		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000317744	ENST00000262467		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000345221		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000269280		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000572272		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000354411		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000577119		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000317744	ENST00000571307		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000574232	ENST00000262467		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000345221		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000269280		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000572272		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000354411		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000577119		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000574232	ENST00000571307		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
Frame-shit	ENST00000539421	ENST00000262467		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000345221		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000269280		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000572272		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000354411		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000577119		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000539421	ENST00000571307		TCGA	RV	KIRC	TCGA-CW-5590-01A	WSCD1	chr17	5998543	+	NLRP1	chr17	5405192	-
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	KIRC	TCGA-B2-4102-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000441448	ENST00000329970		TCGA	RV	KIRC	TCGA-B8-5165-01A	RPF2	chr6	111306341	+	GTF3C6	chr6	111288713	+
5CDS-3UTR	ENST00000441448	ENST00000480191		TCGA	RV	KIRC	TCGA-B8-5165-01A	RPF2	chr6	111306341	+	GTF3C6	chr6	111288713	+
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRC	TCGA-AK-3456-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
5CDS-intron	ENST00000357214	ENST00000487451		TCGA	RV	KIRC	TCGA-AK-3456-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRC	TCGA-AK-3456-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-intron	ENST00000468598	ENST00000487451		TCGA	RV	KIRC	TCGA-AK-3456-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
5UTR-3CDS	ENST00000586683	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
5UTR-3CDS	ENST00000586683	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
5UTR-3CDS	ENST00000252445	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
5UTR-3CDS	ENST00000252445	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000587806	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000587806	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000589171	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000589171	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000591674	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000591674	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000586120	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000586120	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
5UTR-3CDS	ENST00000590700	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
5UTR-3CDS	ENST00000590700	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000591912	ENST00000171214		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
intron-3CDS	ENST00000591912	ENST00000591589		TCGA	RV	KIRC	TCGA-B0-5084-01A	ELOF1	chr19	11670006	-	RDH8	chr19	10127733	+
In-frame	ENST00000381971	ENST00000381750		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381971	ENST00000381730		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381971	ENST00000381728		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381971	ENST00000448872		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381971	ENST00000381732		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
5CDS-intron	ENST00000381971	ENST00000445485		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-3CDS	ENST00000324333	ENST00000381750		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000324333	ENST00000381730		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000324333	ENST00000381728		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000324333	ENST00000448872		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000324333	ENST00000381732		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000324333	ENST00000445485		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-3CDS	ENST00000461870	ENST00000381750		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000461870	ENST00000381730		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000461870	ENST00000381728		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000461870	ENST00000448872		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000461870	ENST00000381732		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
intron-intron	ENST00000461870	ENST00000445485		TCGA	RV	KIRC	TCGA-BP-4983-01A	GLIS3	chr9	4286038	-	RCL1	chr9	4823548	+
Frame-shit	ENST00000315869	ENST00000357214		TCGA	RV	KIRC	TCGA-AK-3456-01A	TFE3	chrX	48900637	-	SFPQ	chr1	35653691	-
5CDS-intron	ENST00000315869	ENST00000468598		TCGA	RV	KIRC	TCGA-AK-3456-01A	TFE3	chrX	48900637	-	SFPQ	chr1	35653691	-
intron-3CDS	ENST00000487451	ENST00000357214		TCGA	RV	KIRC	TCGA-AK-3456-01A	TFE3	chrX	48900637	-	SFPQ	chr1	35653691	-
intron-intron	ENST00000487451	ENST00000468598		TCGA	RV	KIRC	TCGA-AK-3456-01A	TFE3	chrX	48900637	-	SFPQ	chr1	35653691	-
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRC	TCGA-B8-5546-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
5CDS-5UTR	ENST00000357214	ENST00000487451		TCGA	RV	KIRC	TCGA-B8-5546-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRC	TCGA-B8-5546-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
intron-5UTR	ENST00000468598	ENST00000487451		TCGA	RV	KIRC	TCGA-B8-5546-01A	SFPQ	chr1	35652602	-	TFE3	chrX	48891766	-
In-frame	ENST00000371993	ENST00000370357		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574147	-	PASD1	chrX	150828185	+
intron-3CDS	ENST00000356915	ENST00000370357		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574147	-	PASD1	chrX	150828185	+
Frame-shit	ENST00000338081	ENST00000370357		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574147	-	PASD1	chrX	150828185	+
intron-3CDS	ENST00000356220	ENST00000370357		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574147	-	PASD1	chrX	150828185	+
In-frame	ENST00000488120	ENST00000370357		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574147	-	PASD1	chrX	150828185	+
intron-3CDS	ENST00000496551	ENST00000370357		TCGA	RV	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574147	-	PASD1	chrX	150828185	+
In-frame	ENST00000265351	ENST00000053468		TCGA	RV	KIRC	TCGA-A3-3313-01A	XPO5	chr6	43515345	-	MRPS10	chr6	42179655	-
intron-3CDS	ENST00000424378	ENST00000053468		TCGA	RV	KIRC	TCGA-A3-3313-01A	XPO5	chr6	43515345	-	MRPS10	chr6	42179655	-
In-frame	ENST00000421182	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000421182	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000421182	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000421182	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000421182	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000357867	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000357867	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000357867	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000357867	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000357867	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000323926	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000323926	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000323926	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000323926	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000323926	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000336916	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000336916	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000336916	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000336916	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000336916	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000354785	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000354785	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000354785	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000354785	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000354785	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
Frame-shit	ENST00000357009	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
Frame-shit	ENST00000357009	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
Frame-shit	ENST00000357009	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
Frame-shit	ENST00000357009	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000357009	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000346544	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000346544	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000346544	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000346544	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000346544	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000345488	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000345488	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000345488	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000345488	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000345488	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000359671	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000359671	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000359671	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000359671	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000359671	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000446046	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000446046	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000446046	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000446046	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000446046	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000443816	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000443816	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000443816	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000443816	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000443816	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000432072	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000432072	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000432072	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000432072	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000432072	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000356005	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000356005	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000356005	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000356005	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000356005	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
intron-3CDS	ENST00000490833	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
intron-3CDS	ENST00000490833	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
intron-3CDS	ENST00000490833	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
intron-3CDS	ENST00000490833	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
intron-intron	ENST00000490833	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000426059	ENST00000359774		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000426059	ENST00000358147		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000426059	ENST00000392796		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000426059	ENST00000409990		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
5CDS-intron	ENST00000426059	ENST00000409124		TCGA	RV	KIRC	TCGA-BP-5196-01A	FN1	chr2	216298047	-	WDSUB1	chr2	160105023	-
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRC	TCGA-BP-4756-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
5CDS-intron	ENST00000357214	ENST00000487451		TCGA	RV	KIRC	TCGA-BP-4756-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRC	TCGA-BP-4756-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-intron	ENST00000468598	ENST00000487451		TCGA	RV	KIRC	TCGA-BP-4756-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-intron	ENST00000316403	ENST00000354185		TCGA	RV	KIRC	TCGA-DV-A4VZ-01A	CLU	chr8	27455514	-	DDX21	chr10	70723858	+
intron-intron	ENST00000546343	ENST00000354185		TCGA	RV	KIRC	TCGA-DV-A4VZ-01A	CLU	chr8	27455514	-	DDX21	chr10	70723858	+
intron-intron	ENST00000560366	ENST00000354185		TCGA	RV	KIRC	TCGA-DV-A4VZ-01A	CLU	chr8	27455514	-	DDX21	chr10	70723858	+
intron-intron	ENST00000405140	ENST00000354185		TCGA	RV	KIRC	TCGA-DV-A4VZ-01A	CLU	chr8	27455514	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000523500	ENST00000354185		TCGA	RV	KIRC	TCGA-DV-A4VZ-01A	CLU	chr8	27455514	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000319653	ENST00000290913		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
5CDS-intron	ENST00000319653	ENST00000508789		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
5CDS-intron	ENST00000319653	ENST00000515867		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
5CDS-intron	ENST00000545751	ENST00000290913		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
5CDS-intron	ENST00000545751	ENST00000508789		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
5CDS-intron	ENST00000545751	ENST00000515867		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
intron-intron	ENST00000543681	ENST00000290913		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
intron-intron	ENST00000543681	ENST00000508789		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
intron-intron	ENST00000543681	ENST00000515867		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
intron-intron	ENST00000496950	ENST00000290913		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
intron-intron	ENST00000496950	ENST00000508789		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
intron-intron	ENST00000496950	ENST00000515867		TCGA	LD	KIRC	TCGA-A3-3306-01A	FMN2	chr1	240519208	+	CHCHD6	chr3	126499183	+
5UTR-3CDS	ENST00000511725	ENST00000377122		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
5UTR-3CDS	ENST00000511725	ENST00000417816		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
5UTR-3CDS	ENST00000511725	ENST00000377159		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
5UTR-intron	ENST00000511725	ENST00000377119		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
5UTR-intron	ENST00000511725	ENST00000464278		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000253815	ENST00000377122		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000253815	ENST00000417816		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000253815	ENST00000377159		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-intron	ENST00000253815	ENST00000377119		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-intron	ENST00000253815	ENST00000464278		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000398733	ENST00000377122		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000398733	ENST00000417816		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000398733	ENST00000377159		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-intron	ENST00000398733	ENST00000377119		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-intron	ENST00000398733	ENST00000464278		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000505548	ENST00000377122		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000505548	ENST00000417816		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-3CDS	ENST00000505548	ENST00000377159		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-intron	ENST00000505548	ENST00000377119		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
intron-intron	ENST00000505548	ENST00000464278		TCGA	LD	KIRC	TCGA-A3-3307-01A	UBE2D2	chr5	138906197	+	NEBL	chr10	21101869	-
Frame-shit	ENST00000373451	ENST00000361902		TCGA	LD	KIRC	TCGA-A3-3313-01A	CMTR1	chr6	37403538	+	GPX6	chr6	28478681	-
Frame-shit	ENST00000373451	ENST00000474923		TCGA	LD	KIRC	TCGA-A3-3313-01A	CMTR1	chr6	37403538	+	GPX6	chr6	28478681	-
5CDS-5UTR	ENST00000373451	ENST00000483058		TCGA	LD	KIRC	TCGA-A3-3313-01A	CMTR1	chr6	37403538	+	GPX6	chr6	28478681	-
intron-3CDS	ENST00000493656	ENST00000361902		TCGA	LD	KIRC	TCGA-A3-3313-01A	CMTR1	chr6	37403538	+	GPX6	chr6	28478681	-
intron-3CDS	ENST00000493656	ENST00000474923		TCGA	LD	KIRC	TCGA-A3-3313-01A	CMTR1	chr6	37403538	+	GPX6	chr6	28478681	-
intron-5UTR	ENST00000493656	ENST00000483058		TCGA	LD	KIRC	TCGA-A3-3313-01A	CMTR1	chr6	37403538	+	GPX6	chr6	28478681	-
intron-3CDS	ENST00000330180	ENST00000377961		TCGA	LD	KIRC	TCGA-A3-3313-01A	HIST1H2AK	chr6	27805732	-	SCGN	chr6	25689401	+
intron-3UTR	ENST00000330180	ENST00000334979		TCGA	LD	KIRC	TCGA-A3-3313-01A	HIST1H2AK	chr6	27805732	-	SCGN	chr6	25689401	+
5UTR-3CDS	ENST00000373731	ENST00000374023		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000373731	ENST00000374026		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000373731	ENST00000374021		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
3UTR-3CDS	ENST00000474988	ENST00000374023		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
3UTR-3CDS	ENST00000474988	ENST00000374026		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
3UTR-5UTR	ENST00000474988	ENST00000374021		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000544295	ENST00000374023		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000544295	ENST00000374026		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000544295	ENST00000374021		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000449081	ENST00000374023		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000449081	ENST00000374026		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000449081	ENST00000374021		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000536244	ENST00000374023		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000536244	ENST00000374026		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000536244	ENST00000374021		TCGA	LD	KIRC	TCGA-A3-3313-01A	KCTD20	chr6	36410888	+	C6orf106	chr6	34622556	-
Frame-shit	ENST00000372133	ENST00000287152		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372133	ENST00000394362		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372133	ENST00000373213		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372133	ENST00000373216		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372133	ENST00000229913		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372133	ENST00000373215		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372133	ENST00000538893		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372133	ENST00000541946		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372133	ENST00000465719		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372116	ENST00000287152		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372116	ENST00000394362		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372116	ENST00000373213		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372116	ENST00000373216		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
Frame-shit	ENST00000372116	ENST00000229913		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372116	ENST00000373215		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372116	ENST00000538893		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372116	ENST00000541946		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
5CDS-intron	ENST00000372116	ENST00000465719		TCGA	LD	KIRC	TCGA-A3-3313-01A	MRPS18A	chr6	43648826	-	KIF6	chr6	39353448	-
In-frame	ENST00000339488	ENST00000359314		TCGA	LD	KIRC	TCGA-A3-3313-01A	PTCHD4	chr6	47976370	-	CD2AP	chr6	47471016	+
5CDS-intron	ENST00000339488	ENST00000486693		TCGA	LD	KIRC	TCGA-A3-3313-01A	PTCHD4	chr6	47976370	-	CD2AP	chr6	47471016	+
In-frame	ENST00000543600	ENST00000359314		TCGA	LD	KIRC	TCGA-A3-3313-01A	PTCHD4	chr6	47976370	-	CD2AP	chr6	47471016	+
5CDS-intron	ENST00000543600	ENST00000486693		TCGA	LD	KIRC	TCGA-A3-3313-01A	PTCHD4	chr6	47976370	-	CD2AP	chr6	47471016	+
3UTR-3CDS	ENST00000531981	ENST00000372133		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
3UTR-3CDS	ENST00000531981	ENST00000372116		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000425468	ENST00000372133		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000425468	ENST00000372116		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000252207	ENST00000372133		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000252207	ENST00000372116		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000531979	ENST00000372133		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000531979	ENST00000372116		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000527436	ENST00000372133		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
Frame-shit	ENST00000527436	ENST00000372116		TCGA	LD	KIRC	TCGA-A3-3313-01A	ZSCAN9	chr6	28195615	+	MRPS18A	chr6	43643354	-
intron-intron	ENST00000320631	ENST00000413981		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000320631	ENST00000331444		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000320631	ENST00000608842		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000320631	ENST00000436645		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000359393	ENST00000413981		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000359393	ENST00000331444		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000359393	ENST00000608842		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000359393	ENST00000436645		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000488711	ENST00000413981		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000488711	ENST00000331444		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000488711	ENST00000608842		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
intron-intron	ENST00000488711	ENST00000436645		TCGA	LD	KIRC	TCGA-A3-3319-01A	EHD1	chr11	64620686	-	DGCR6	chr22	18900525	+
Frame-shit	ENST00000522693	ENST00000274532		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
Frame-shit	ENST00000522693	ENST00000407087		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5CDS-5UTR	ENST00000522693	ENST00000406964		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
Frame-shit	ENST00000523175	ENST00000274532		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
Frame-shit	ENST00000523175	ENST00000407087		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5CDS-5UTR	ENST00000523175	ENST00000406964		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
In-frame	ENST00000339252	ENST00000274532		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
In-frame	ENST00000339252	ENST00000407087		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5CDS-5UTR	ENST00000339252	ENST00000406964		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
In-frame	ENST00000544197	ENST00000274532		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
In-frame	ENST00000544197	ENST00000407087		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5CDS-5UTR	ENST00000544197	ENST00000406964		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
In-frame	ENST00000425854	ENST00000274532		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
In-frame	ENST00000425854	ENST00000407087		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5CDS-5UTR	ENST00000425854	ENST00000406964		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5UTR-3CDS	ENST00000517644	ENST00000274532		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5UTR-3CDS	ENST00000517644	ENST00000407087		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5UTR-5UTR	ENST00000517644	ENST00000406964		TCGA	LD	KIRC	TCGA-A3-3322-01A	HAVCR1	chr5	156464258	-	TIMD4	chr5	156353323	-
5CDS-intron	ENST00000357022	ENST00000402291		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000357022	ENST00000356719		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000357022	ENST00000295031		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000357022	ENST00000453873		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000357022	ENST00000482513		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
3UTR-intron	ENST00000489653	ENST00000402291		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
3UTR-intron	ENST00000489653	ENST00000356719		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
3UTR-intron	ENST00000489653	ENST00000295031		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
3UTR-intron	ENST00000489653	ENST00000453873		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
3UTR-intron	ENST00000489653	ENST00000482513		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000394457	ENST00000402291		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000394457	ENST00000356719		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000394457	ENST00000295031		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000394457	ENST00000453873		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000394457	ENST00000482513		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000410073	ENST00000402291		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000410073	ENST00000356719		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000410073	ENST00000295031		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000410073	ENST00000453873		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
5CDS-intron	ENST00000410073	ENST00000482513		TCGA	LD	KIRC	TCGA-A3-3326-01A	AHSA2	chr2	61413632	+	KIAA1841	chr2	61361272	+
Frame-shit	ENST00000382496	ENST00000246024		TCGA	LD	KIRC	TCGA-A3-3328-01A	SEMA5A	chr5	9379935	-	TMX4	chr20	7990962	-
5CDS-5UTR	ENST00000382496	ENST00000530935		TCGA	LD	KIRC	TCGA-A3-3328-01A	SEMA5A	chr5	9379935	-	TMX4	chr20	7990962	-
Frame-shit	ENST00000297438	ENST00000220764		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000297438	ENST00000519007		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000297438	ENST00000522161		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
Frame-shit	ENST00000451899	ENST00000220764		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000451899	ENST00000519007		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000451899	ENST00000522161		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
Frame-shit	ENST00000520659	ENST00000220764		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000520659	ENST00000519007		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
5CDS-3UTR	ENST00000520659	ENST00000522161		TCGA	LD	KIRC	TCGA-A3-3335-01A	OSGIN2	chr8	90921949	+	DECR1	chr8	91029352	+
intron-5UTR	ENST00000463381	ENST00000421797		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000463381	ENST00000429546		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000463381	ENST00000352689		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-intron	ENST00000463381	ENST00000498778		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000473312	ENST00000421797		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000473312	ENST00000429546		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000473312	ENST00000352689		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-intron	ENST00000473312	ENST00000498778		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000479901	ENST00000421797		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000479901	ENST00000429546		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000479901	ENST00000352689		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-intron	ENST00000479901	ENST00000498778		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000397238	ENST00000421797		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000397238	ENST00000429546		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-5UTR	ENST00000397238	ENST00000352689		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
5CDS-intron	ENST00000397238	ENST00000498778		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000476375	ENST00000421797		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000476375	ENST00000429546		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000476375	ENST00000352689		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-intron	ENST00000476375	ENST00000498778		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000335367	ENST00000421797		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000335367	ENST00000429546		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-5UTR	ENST00000335367	ENST00000352689		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
intron-intron	ENST00000335367	ENST00000498778		TCGA	LD	KIRC	TCGA-A3-3363-01A	AGAP3	chr7	150784159	+	MKLN1	chr7	131071879	+
In-frame	ENST00000407559	ENST00000262178		TCGA	LD	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158694507	+	VIPR2	chr7	158851269	-
In-frame	ENST00000407559	ENST00000377633		TCGA	LD	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158694507	+	VIPR2	chr7	158851269	-
In-frame	ENST00000407559	ENST00000402066		TCGA	LD	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158694507	+	VIPR2	chr7	158851269	-
5CDS-intron	ENST00000407559	ENST00000421760		TCGA	LD	KIRC	TCGA-A3-3363-01A	WDR60	chr7	158694507	+	VIPR2	chr7	158851269	-
In-frame	ENST00000428771	ENST00000395146		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
In-frame	ENST00000428771	ENST00000307808		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000428771	ENST00000544085		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
5CDS-intron	ENST00000428771	ENST00000511996		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
In-frame	ENST00000304952	ENST00000395146		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
In-frame	ENST00000304952	ENST00000307808		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
5CDS-5UTR	ENST00000304952	ENST00000544085		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
5CDS-intron	ENST00000304952	ENST00000511996		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
intron-3CDS	ENST00000484667	ENST00000395146		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
intron-3CDS	ENST00000484667	ENST00000307808		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
intron-5UTR	ENST00000484667	ENST00000544085		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
intron-intron	ENST00000484667	ENST00000511996		TCGA	LD	KIRC	TCGA-A3-3373-01A	HES4	chr1	935072	-	AFF1	chr4	88005272	+
In-frame	ENST00000446573	ENST00000375820		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
In-frame	ENST00000446573	ENST00000543140		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000446573	ENST00000467182		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
In-frame	ENST00000377211	ENST00000375820		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
In-frame	ENST00000377211	ENST00000543140		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000377211	ENST00000467182		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
In-frame	ENST00000334286	ENST00000375820		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
In-frame	ENST00000334286	ENST00000543140		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000334286	ENST00000467182		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
intron-3CDS	ENST00000475537	ENST00000375820		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
intron-3CDS	ENST00000475537	ENST00000543140		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
intron-intron	ENST00000475537	ENST00000467182		TCGA	LD	KIRC	TCGA-A3-A8OW-01A	EDNRB	chr13	78492226	-	COL4A1	chr13	110895081	-
3UTR-3CDS	ENST00000578382	ENST00000584667		TCGA	LD	KIRC	TCGA-AK-3426-01A	MYO15B	chr17	73592980	+	SAP30BP	chr17	73664596	+
3UTR-3CDS	ENST00000578382	ENST00000355423		TCGA	LD	KIRC	TCGA-AK-3426-01A	MYO15B	chr17	73592980	+	SAP30BP	chr17	73664596	+
3UTR-3UTR	ENST00000578382	ENST00000579864		TCGA	LD	KIRC	TCGA-AK-3426-01A	MYO15B	chr17	73592980	+	SAP30BP	chr17	73664596	+
intron-3CDS	ENST00000583560	ENST00000584667		TCGA	LD	KIRC	TCGA-AK-3426-01A	MYO15B	chr17	73592980	+	SAP30BP	chr17	73664596	+
intron-3CDS	ENST00000583560	ENST00000355423		TCGA	LD	KIRC	TCGA-AK-3426-01A	MYO15B	chr17	73592980	+	SAP30BP	chr17	73664596	+
intron-3UTR	ENST00000583560	ENST00000579864		TCGA	LD	KIRC	TCGA-AK-3426-01A	MYO15B	chr17	73592980	+	SAP30BP	chr17	73664596	+
3UTR-3CDS	ENST00000460833	ENST00000295874		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000460833	ENST00000474889		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-intron	ENST00000460833	ENST00000495879		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000474768	ENST00000295874		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000474768	ENST00000474889		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-intron	ENST00000474768	ENST00000495879		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000481312	ENST00000295874		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000481312	ENST00000474889		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-intron	ENST00000481312	ENST00000495879		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000485174	ENST00000295874		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-3CDS	ENST00000485174	ENST00000474889		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
3UTR-intron	ENST00000485174	ENST00000495879		TCGA	LD	KIRC	TCGA-AK-3428-01A	ADAMTS9-AS2	chr3	64671014	+	PTPRG	chr3	61989023	+
In-frame	ENST00000356770	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000356770	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000356770	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000356770	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000356770	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000394830	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000296302	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000337303	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000410007	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000409057	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000409114	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000307092		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000307076		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000422318		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000459839		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000409767	ENST00000490681		TCGA	LD	KIRC	TCGA-AK-3455-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
intron-3CDS	ENST00000355366	ENST00000340533		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000355366	ENST00000494131		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000355366	ENST00000397914		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-5UTR	ENST00000355366	ENST00000299438		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-intron	ENST00000355366	ENST00000579064		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000358531	ENST00000340533		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000358531	ENST00000494131		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000358531	ENST00000397914		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
5CDS-5UTR	ENST00000358531	ENST00000299438		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
5CDS-intron	ENST00000358531	ENST00000579064		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000487035	ENST00000340533		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000487035	ENST00000494131		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000487035	ENST00000397914		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-5UTR	ENST00000487035	ENST00000299438		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-intron	ENST00000487035	ENST00000579064		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000371027	ENST00000340533		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000371027	ENST00000494131		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000371027	ENST00000397914		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-5UTR	ENST00000371027	ENST00000299438		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-intron	ENST00000371027	ENST00000579064		TCGA	LD	KIRC	TCGA-AS-3777-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
Frame-shit	ENST00000536015	ENST00000484157		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
In-frame	ENST00000536015	ENST00000303343		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
In-frame	ENST00000536015	ENST00000368404		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000536015	ENST00000368401		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
5CDS-3UTR	ENST00000536015	ENST00000368405		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000484157		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000303343		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000368404		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000368401		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
5CDS-3UTR	ENST00000283684	ENST00000368405		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000484157		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000303343		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000368404		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000368401		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3UTR	ENST00000589147	ENST00000368405		TCGA	LD	KIRC	TCGA-AS-3777-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
5CDS-intron	ENST00000308197	ENST00000267023		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000308197	ENST00000380198		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000308197	ENST00000341463		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000433805	ENST00000267023		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000433805	ENST00000380198		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000433805	ENST00000341463		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000546544	ENST00000267023		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000546544	ENST00000380198		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000546544	ENST00000341463		TCGA	LD	KIRC	TCGA-AS-3777-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
Frame-shit	ENST00000407647	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407647	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407647	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407647	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407647	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000407647	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000407647	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000360113	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000360113	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000360113	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000360113	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000360113	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-intron	ENST00000360113	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
intron-intron	ENST00000360113	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000406549	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000406549	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000406549	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000406549	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000406549	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000406549	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000406549	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000341313	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000341313	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000341313	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000341313	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000341313	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000341313	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000341313	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000403764	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000403764	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000403764	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000403764	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000403764	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000403764	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000403764	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407854	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407854	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407854	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407854	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000407854	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000407854	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000407854	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000471961	ENST00000332050		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000471961	ENST00000397938		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000471961	ENST00000406548		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000471961	ENST00000331029		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
Frame-shit	ENST00000471961	ENST00000414183		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000471961	ENST00000333395		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000471961	ENST00000332035		TCGA	LD	KIRC	TCGA-AS-3777-01A	GAS2L1	chr22	29706988	+	EWSR1	chr22	29694723	+
5UTR-3CDS	ENST00000355630	ENST00000297423		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000355630	ENST00000518074		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000355630	ENST00000541342		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000355630	ENST00000521214		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000355630	ENST00000517693		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000355630	ENST00000518060		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000396617	ENST00000297423		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000396617	ENST00000518074		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000396617	ENST00000541342		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000396617	ENST00000521214		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000396617	ENST00000517693		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000396617	ENST00000518060		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000402042	ENST00000297423		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000402042	ENST00000518074		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000402042	ENST00000541342		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000402042	ENST00000521214		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000402042	ENST00000517693		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000402042	ENST00000518060		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000466278	ENST00000297423		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000466278	ENST00000518074		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000466278	ENST00000541342		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000466278	ENST00000521214		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000466278	ENST00000517693		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000466278	ENST00000518060		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000407029	ENST00000297423		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000407029	ENST00000518074		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000407029	ENST00000541342		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3UTR	ENST00000407029	ENST00000521214		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-5UTR	ENST00000407029	ENST00000517693		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-intron	ENST00000407029	ENST00000518060		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000402630	ENST00000297423		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000402630	ENST00000518074		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000402630	ENST00000541342		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3UTR	ENST00000402630	ENST00000521214		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-5UTR	ENST00000402630	ENST00000517693		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-intron	ENST00000402630	ENST00000518060		TCGA	LD	KIRC	TCGA-AS-3777-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
Frame-shit	ENST00000539591	ENST00000378407		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000378406		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000426546		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000327351		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000421582		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000378409		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000526660	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000289575	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000341411	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000532236	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000531756	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000525650	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000454962	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000316673		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000609795		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000457232		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000443598		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000316099		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000428359	ENST00000415691		TCGA	LD	KIRC	TCGA-AS-3777-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43034698	+
5CDS-5UTR	ENST00000541428	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000541428	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000541428	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000541428	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000541428	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000379454	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000379454	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000379454	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000379454	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000379454	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-5UTR	ENST00000523897	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-5UTR	ENST00000523897	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-5UTR	ENST00000523897	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-intron	ENST00000523897	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-intron	ENST00000523897	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-5UTR	ENST00000522919	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-5UTR	ENST00000522919	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-5UTR	ENST00000522919	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-intron	ENST00000522919	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
intron-intron	ENST00000522919	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000356457	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000356457	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000356457	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000356457	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000356457	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000518068	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000518068	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000518068	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000518068	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000518068	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517903	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517903	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517903	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517903	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517903	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000445642	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000445642	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000445642	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000445642	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000445642	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517847	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517847	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517847	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517847	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517847	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000522835	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000522835	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000522835	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000522835	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000522835	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517856	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517856	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517856	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517856	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517856	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000389204	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000389204	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000389204	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000389204	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000389204	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000522603	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000522603	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000522603	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000522603	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000522603	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000379449	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000379449	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000379449	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000379449	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000379449	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517661	ENST00000381232		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517661	ENST00000555818		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-5UTR	ENST00000517661	ENST00000358550		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517661	ENST00000537413		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5CDS-intron	ENST00000517661	ENST00000554874		TCGA	LD	KIRC	TCGA-B0-4688-01A	ASPH	chr8	62593527	-	SIPA1L1	chr14	72054288	+
5UTR-3CDS	ENST00000312561	ENST00000546136		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-3CDS	ENST00000312561	ENST00000381381		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-3CDS	ENST00000312561	ENST00000309359		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-3CDS	ENST00000312561	ENST00000451604		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-3CDS	ENST00000312561	ENST00000537393		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-3CDS	ENST00000312561	ENST00000541536		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-intron	ENST00000312561	ENST00000396007		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-intron	ENST00000312561	ENST00000545921		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-intron	ENST00000312561	ENST00000541847		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-intron	ENST00000312561	ENST00000441133		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5UTR-intron	ENST00000312561	ENST00000536850		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-3CDS	ENST00000535596	ENST00000546136		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-3CDS	ENST00000535596	ENST00000381381		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-3CDS	ENST00000535596	ENST00000309359		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-3CDS	ENST00000535596	ENST00000451604		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-3CDS	ENST00000535596	ENST00000537393		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-3CDS	ENST00000535596	ENST00000541536		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-intron	ENST00000535596	ENST00000396007		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-intron	ENST00000535596	ENST00000545921		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-intron	ENST00000535596	ENST00000541847		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-intron	ENST00000535596	ENST00000441133		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
3UTR-intron	ENST00000535596	ENST00000536850		TCGA	LD	KIRC	TCGA-B0-4688-01A	KIAA1551	chr12	32123290	+	SOX5	chr12	23908658	-
5CDS-intron	ENST00000215790	ENST00000382363		TCGA	LD	KIRC	TCGA-B0-4688-01A	TBC1D10A	chr22	30722662	-	RNF215	chr22	30772009	-
5CDS-intron	ENST00000403477	ENST00000382363		TCGA	LD	KIRC	TCGA-B0-4688-01A	TBC1D10A	chr22	30722662	-	RNF215	chr22	30772009	-
intron-intron	ENST00000403362	ENST00000382363		TCGA	LD	KIRC	TCGA-B0-4688-01A	TBC1D10A	chr22	30722662	-	RNF215	chr22	30772009	-
5UTR-intron	ENST00000490449	ENST00000382363		TCGA	LD	KIRC	TCGA-B0-4688-01A	TBC1D10A	chr22	30722662	-	RNF215	chr22	30772009	-
5CDS-intron	ENST00000356136	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000356136	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000356136	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000356136	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000356136	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000356136	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000356136	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-intron	ENST00000528420	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000533454	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000531818	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000532130	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000539288	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
3UTR-intron	ENST00000525872	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000316399		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000396356		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000352083		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000528252		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000527619		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000528429		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
intron-intron	ENST00000538870	ENST00000533658		TCGA	LD	KIRC	TCGA-B0-4688-01A	UVRAG	chr11	75623083	+	SOX6	chr11	16633807	-
5CDS-5UTR	ENST00000268182	ENST00000268130		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000268182	ENST00000560294		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
5CDS-5UTR	ENST00000268182	ENST00000558000		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
5CDS-intron	ENST00000268182	ENST00000444934		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560738	ENST00000268130		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560738	ENST00000560294		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560738	ENST00000558000		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-intron	ENST00000560738	ENST00000444934		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560020	ENST00000268130		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560020	ENST00000560294		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-5UTR	ENST00000560020	ENST00000558000		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
intron-intron	ENST00000560020	ENST00000444934		TCGA	LD	KIRC	TCGA-B0-4690-01A	IQGAP1	chr15	90992875	+	WDR93	chr15	90244938	+
5UTR-3CDS	ENST00000268154	ENST00000300055		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZNF710	chr15	90544846	+	PLIN1	chr15	90216645	-
5UTR-3CDS	ENST00000268154	ENST00000430628		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZNF710	chr15	90544846	+	PLIN1	chr15	90216645	-
intron-3CDS	ENST00000560908	ENST00000300055		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZNF710	chr15	90544846	+	PLIN1	chr15	90216645	-
intron-3CDS	ENST00000560908	ENST00000430628		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZNF710	chr15	90544846	+	PLIN1	chr15	90216645	-
Frame-shit	ENST00000336517	ENST00000393446		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000336517	ENST00000265437		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000336517	ENST00000393451		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000336517	ENST00000393449		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000336517	ENST00000323984		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000336517	ENST00000432298		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000336517	ENST00000422922		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000336517	ENST00000487459		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000336517	ENST00000393443		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000336517	ENST00000393447		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000336517	ENST00000393444		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000336517	ENST00000465133		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000393446		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000265437		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000393451		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000393449		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000323984		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000432298		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
Frame-shit	ENST00000394857	ENST00000422922		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000394857	ENST00000487459		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000394857	ENST00000393443		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000394857	ENST00000393447		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000394857	ENST00000393444		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5CDS-intron	ENST00000394857	ENST00000465133		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000393446		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000265437		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000393451		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000393449		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000323984		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000432298		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-3CDS	ENST00000416245	ENST00000422922		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-intron	ENST00000416245	ENST00000487459		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-intron	ENST00000416245	ENST00000393443		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-intron	ENST00000416245	ENST00000393447		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-intron	ENST00000416245	ENST00000393444		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
5UTR-intron	ENST00000416245	ENST00000465133		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000393446		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000265437		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000393451		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000393449		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000323984		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000432298		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-3CDS	ENST00000467555	ENST00000422922		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-intron	ENST00000467555	ENST00000487459		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-intron	ENST00000467555	ENST00000393443		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-intron	ENST00000467555	ENST00000393447		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-intron	ENST00000467555	ENST00000393444		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
intron-intron	ENST00000467555	ENST00000465133		TCGA	LD	KIRC	TCGA-B0-4690-01A	ZP3	chr7	76058950	+	ST7	chr7	116849841	+
In-frame	ENST00000445977	ENST00000223208		TCGA	LD	KIRC	TCGA-B0-4691-01A	COPG2	chr7	130337709	-	CEP41	chr7	130042640	-
In-frame	ENST00000445977	ENST00000541543		TCGA	LD	KIRC	TCGA-B0-4691-01A	COPG2	chr7	130337709	-	CEP41	chr7	130042640	-
In-frame	ENST00000445977	ENST00000343969		TCGA	LD	KIRC	TCGA-B0-4691-01A	COPG2	chr7	130337709	-	CEP41	chr7	130042640	-
5CDS-intron	ENST00000445977	ENST00000489512		TCGA	LD	KIRC	TCGA-B0-4691-01A	COPG2	chr7	130337709	-	CEP41	chr7	130042640	-
5CDS-intron	ENST00000445977	ENST00000495702		TCGA	LD	KIRC	TCGA-B0-4691-01A	COPG2	chr7	130337709	-	CEP41	chr7	130042640	-
5CDS-5UTR	ENST00000204726	ENST00000537226		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-intron	ENST00000204726	ENST00000397313		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-5UTR	ENST00000450791	ENST00000537226		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-intron	ENST00000450791	ENST00000397313		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-5UTR	ENST00000456883	ENST00000537226		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-intron	ENST00000456883	ENST00000397313		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-5UTR	ENST00000537452	ENST00000537226		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-intron	ENST00000537452	ENST00000397313		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-5UTR	ENST00000545875	ENST00000537226		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
5CDS-intron	ENST00000545875	ENST00000397313		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
intron-5UTR	ENST00000534967	ENST00000537226		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
intron-intron	ENST00000534967	ENST00000397313		TCGA	LD	KIRC	TCGA-B0-4696-01A	GOLGA3	chr12	133393126	-	ZNF891	chr12	133698610	-
In-frame	ENST00000299957	ENST00000260327		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000299957	ENST00000396780		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000299957	ENST00000558966		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000299957	ENST00000558373		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
5CDS-3UTR	ENST00000299957	ENST00000561189		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
3UTR-3CDS	ENST00000360824	ENST00000260327		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
3UTR-3CDS	ENST00000360824	ENST00000396780		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
3UTR-3CDS	ENST00000360824	ENST00000558966		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
3UTR-3CDS	ENST00000360824	ENST00000558373		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
3UTR-3UTR	ENST00000360824	ENST00000561189		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000345795	ENST00000260327		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000345795	ENST00000396780		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000345795	ENST00000558966		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000345795	ENST00000558373		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
5CDS-3UTR	ENST00000345795	ENST00000561189		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
intron-3CDS	ENST00000429162	ENST00000260327		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
intron-3CDS	ENST00000429162	ENST00000396780		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
intron-3CDS	ENST00000429162	ENST00000558966		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
intron-3CDS	ENST00000429162	ENST00000558373		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
intron-3UTR	ENST00000429162	ENST00000561189		TCGA	LD	KIRC	TCGA-B0-4698-01A	CASC4	chr15	44630515	+	CTDSPL2	chr15	44788578	+
In-frame	ENST00000403681	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000403681	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000403681	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000403681	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000403681	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000541363	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000541363	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000541363	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000541363	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000541363	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000393577	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000393577	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000393577	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000393577	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000393577	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000393578	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000393578	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000393578	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000393578	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000393578	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000425208	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000425208	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000425208	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000425208	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000425208	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000536545	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000536545	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000536545	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000536545	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000536545	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000354636	ENST00000397901		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000354636	ENST00000253475		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000354636	ENST00000535997		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000354636	ENST00000550102		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000354636	ENST00000547614		TCGA	LD	KIRC	TCGA-B0-4698-01A	HMGA2	chr12	66221867	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000256474	ENST00000287652		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
Frame-shit	ENST00000256474	ENST00000448281		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
5CDS-intron	ENST00000256474	ENST00000496355		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
Frame-shit	ENST00000345392	ENST00000287652		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
Frame-shit	ENST00000345392	ENST00000448281		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
5CDS-intron	ENST00000345392	ENST00000496355		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
intron-3CDS	ENST00000477538	ENST00000287652		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
intron-3CDS	ENST00000477538	ENST00000448281		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
intron-intron	ENST00000477538	ENST00000496355		TCGA	LD	KIRC	TCGA-B0-4700-01A	VHL	chr3	10183871	+	TATDN2	chr3	10311815	+
5CDS-intron	ENST00000367342	ENST00000332129		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000367342	ENST00000360529		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000367342	ENST00000461742		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000367342	ENST00000422435		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000413687	ENST00000332129		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000413687	ENST00000360529		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000413687	ENST00000461742		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000413687	ENST00000422435		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
intron-intron	ENST00000465162	ENST00000332129		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
intron-intron	ENST00000465162	ENST00000360529		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
intron-intron	ENST00000465162	ENST00000461742		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
intron-intron	ENST00000465162	ENST00000422435		TCGA	LD	KIRC	TCGA-B0-4701-01A	C1orf106	chr1	200870228	+	KIF21B	chr1	200970738	-
5CDS-intron	ENST00000318602	ENST00000381923		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
5CDS-3UTR	ENST00000318602	ENST00000545924		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
5CDS-intron	ENST00000318602	ENST00000298530		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
5CDS-intron	ENST00000318602	ENST00000536952		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
intron-intron	ENST00000542567	ENST00000381923		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
intron-3UTR	ENST00000542567	ENST00000545924		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
intron-intron	ENST00000542567	ENST00000298530		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
intron-intron	ENST00000542567	ENST00000536952		TCGA	LD	KIRC	TCGA-B0-4714-01A	A2M	chr12	9227156	-	TMEM52B	chr12	10327881	+
intron-3CDS	ENST00000376281	ENST00000381125		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-3CDS	ENST00000376281	ENST00000381075		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-intron	ENST00000376281	ENST00000421751		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-5UTR	ENST00000376281	ENST00000381072		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-3CDS	ENST00000376263	ENST00000381125		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-3CDS	ENST00000376263	ENST00000381075		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-intron	ENST00000376263	ENST00000421751		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-5UTR	ENST00000376263	ENST00000381072		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-3CDS	ENST00000376264	ENST00000381125		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-3CDS	ENST00000376264	ENST00000381075		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-intron	ENST00000376264	ENST00000421751		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-5UTR	ENST00000376264	ENST00000381072		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-3CDS	ENST00000351839	ENST00000381125		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-3CDS	ENST00000351839	ENST00000381075		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-intron	ENST00000351839	ENST00000421751		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
intron-5UTR	ENST00000351839	ENST00000381072		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-3CDS	ENST00000360384	ENST00000381125		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-3CDS	ENST00000360384	ENST00000381075		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-intron	ENST00000360384	ENST00000421751		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5UTR-5UTR	ENST00000360384	ENST00000381072		TCGA	LD	KIRC	TCGA-B0-4810-01A	HNRNPK	chr9	86595068	-	PFKP	chr10	3172011	+
5CDS-3UTR	ENST00000494664	ENST00000380005		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
5CDS-3UTR	ENST00000494664	ENST00000311364		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
5CDS-3UTR	ENST00000494664	ENST00000458310		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
5CDS-intron	ENST00000494664	ENST00000513950		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
5CDS-intron	ENST00000494664	ENST00000508206		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
intron-3UTR	ENST00000493694	ENST00000380005		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
intron-3UTR	ENST00000493694	ENST00000311364		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
intron-3UTR	ENST00000493694	ENST00000458310		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
intron-intron	ENST00000493694	ENST00000513950		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
intron-intron	ENST00000493694	ENST00000508206		TCGA	LD	KIRC	TCGA-B0-4810-01A	TIMMDC1	chr3	119222868	+	RFESD	chr5	94992656	+
5UTR-3CDS	ENST00000355904	ENST00000487694		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
5UTR-3CDS	ENST00000355904	ENST00000461745		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
5UTR-3CDS	ENST00000355904	ENST00000332191		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
5UTR-intron	ENST00000355904	ENST00000469233		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
intron-3CDS	ENST00000522833	ENST00000487694		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
intron-3CDS	ENST00000522833	ENST00000461745		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
intron-3CDS	ENST00000522833	ENST00000332191		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
intron-intron	ENST00000522833	ENST00000469233		TCGA	LD	KIRC	TCGA-B0-4816-01A	GTF2E2	chr8	30515490	-	ROBO2	chr3	77147165	+
3UTR-intron	ENST00000409532	ENST00000543905		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000409532	ENST00000544863		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000409532	ENST00000282077		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000409532	ENST00000392571		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000409532	ENST00000410055		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000264107	ENST00000543905		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000264107	ENST00000544863		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000264107	ENST00000282077		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000264107	ENST00000392571		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000264107	ENST00000410055		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000343713	ENST00000543905		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000343713	ENST00000544863		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000343713	ENST00000282077		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000343713	ENST00000392571		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000343713	ENST00000410055		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-intron	ENST00000264106	ENST00000543905		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-intron	ENST00000264106	ENST00000544863		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-5UTR	ENST00000264106	ENST00000282077		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-5UTR	ENST00000264106	ENST00000392571		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-intron	ENST00000264106	ENST00000410055		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000375221	ENST00000543905		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000375221	ENST00000544863		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000375221	ENST00000282077		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-5UTR	ENST00000375221	ENST00000392571		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
3UTR-intron	ENST00000375221	ENST00000410055		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-intron	ENST00000409080	ENST00000543905		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-intron	ENST00000409080	ENST00000544863		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-5UTR	ENST00000409080	ENST00000282077		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-5UTR	ENST00000409080	ENST00000392571		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
5CDS-intron	ENST00000409080	ENST00000410055		TCGA	LD	KIRC	TCGA-B0-4816-01A	ITGA6	chr2	173368979	+	PDK1	chr2	173420728	+
In-frame	ENST00000295640	ENST00000367287		TCGA	LD	KIRC	TCGA-B0-4819-01A	RNPEP	chr1	201972589	+	TIMM17A	chr1	201932744	+
5CDS-3UTR	ENST00000295640	ENST00000482943		TCGA	LD	KIRC	TCGA-B0-4819-01A	RNPEP	chr1	201972589	+	TIMM17A	chr1	201932744	+
In-frame	ENST00000367286	ENST00000367287		TCGA	LD	KIRC	TCGA-B0-4819-01A	RNPEP	chr1	201972589	+	TIMM17A	chr1	201932744	+
5CDS-3UTR	ENST00000367286	ENST00000482943		TCGA	LD	KIRC	TCGA-B0-4819-01A	RNPEP	chr1	201972589	+	TIMM17A	chr1	201932744	+
3UTR-3CDS	ENST00000471105	ENST00000367287		TCGA	LD	KIRC	TCGA-B0-4819-01A	RNPEP	chr1	201972589	+	TIMM17A	chr1	201932744	+
3UTR-3UTR	ENST00000471105	ENST00000482943		TCGA	LD	KIRC	TCGA-B0-4819-01A	RNPEP	chr1	201972589	+	TIMM17A	chr1	201932744	+
5UTR-5UTR	ENST00000383737	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000383737	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000383737	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000383737	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000383737	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000395734	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000395734	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000395734	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000395734	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000395734	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000426837	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000426837	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000426837	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000426837	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000426837	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000360240	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000360240	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000360240	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000360240	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000360240	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000439356	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000439356	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000439356	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000439356	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000439356	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000264724	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000264724	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-3UTR	ENST00000264724	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000264724	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-intron	ENST00000264724	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000420772	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000420772	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-3UTR	ENST00000420772	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000420772	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-intron	ENST00000420772	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000441748	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000441748	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-3UTR	ENST00000441748	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000441748	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-intron	ENST00000441748	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000462206	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000462206	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-3UTR	ENST00000462206	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000462206	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-intron	ENST00000462206	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000434267	ENST00000446256		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000434267	ENST00000445061		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-3UTR	ENST00000434267	ENST00000476446		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000434267	ENST00000348968		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
intron-intron	ENST00000434267	ENST00000457607		TCGA	LD	KIRC	TCGA-B0-4822-01A	MAP4	chr3	48130263	-	DHX30	chr3	47846816	+
Frame-shit	ENST00000320895	ENST00000296821		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
Frame-shit	ENST00000320895	ENST00000324642		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
Frame-shit	ENST00000507807	ENST00000296821		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
Frame-shit	ENST00000507807	ENST00000324642		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
Frame-shit	ENST00000320927	ENST00000296821		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
Frame-shit	ENST00000320927	ENST00000324642		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
intron-3CDS	ENST00000506641	ENST00000296821		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
intron-3CDS	ENST00000506641	ENST00000324642		TCGA	LD	KIRC	TCGA-B0-4842-01A	CLPTM1L	chr5	1334404	-	SLC6A18	chr5	1232334	+
5CDS-intron	ENST00000507917	ENST00000461783		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-3UTR	ENST00000507917	ENST00000449545		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000367174		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000456144		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000318981		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000360366		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000529824		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000456877		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000528391		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507917	ENST00000275246		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000461783		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-3UTR	ENST00000295448	ENST00000449545		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000367174		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000456144		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000318981		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000360366		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000529824		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000456877		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000528391		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000295448	ENST00000275246		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000461783		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-3UTR	ENST00000507534	ENST00000449545		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000367174		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000456144		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000318981		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000360366		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000529824		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000456877		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000528391		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000507534	ENST00000275246		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000461783		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-3UTR	ENST00000509756	ENST00000449545		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000367174		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000456144		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000318981		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000360366		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000529824		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000456877		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000528391		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000509756	ENST00000275246		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000461783		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-3UTR	ENST00000511187	ENST00000449545		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000367174		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000456144		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000318981		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000360366		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000529824		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000456877		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000528391		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000511187	ENST00000275246		TCGA	LD	KIRC	TCGA-B0-4842-01A	GNPDA2	chr4	44719130	-	TIAM2	chr6	155228864	+
In-frame	ENST00000256413	ENST00000538487		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000256413	ENST00000374181		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000256413	ENST00000374177		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000256413	ENST00000544773		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000256413	ENST00000545715		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000256413	ENST00000535756		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000256413	ENST00000609222		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000256413	ENST00000455714		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000382998	ENST00000538487		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000382998	ENST00000374181		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000382998	ENST00000374177		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
In-frame	ENST00000382998	ENST00000544773		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000382998	ENST00000545715		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000382998	ENST00000535756		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000382998	ENST00000609222		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-intron	ENST00000382998	ENST00000455714		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-3CDS	ENST00000592658	ENST00000538487		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-3CDS	ENST00000592658	ENST00000374181		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-3CDS	ENST00000592658	ENST00000374177		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-3CDS	ENST00000592658	ENST00000544773		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-intron	ENST00000592658	ENST00000545715		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-intron	ENST00000592658	ENST00000535756		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-intron	ENST00000592658	ENST00000609222		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
intron-intron	ENST00000592658	ENST00000455714		TCGA	LD	KIRC	TCGA-B0-4945-01A	CTIF	chr18	46197115	+	GRM4	chr6	34059876	-
5CDS-5UTR	ENST00000409508	ENST00000392935		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000409508	ENST00000522572		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000409508	ENST00000521158		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000409508	ENST00000022615		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000328843	ENST00000392935		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000328843	ENST00000522572		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000328843	ENST00000521158		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000328843	ENST00000022615		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
intron-5UTR	ENST00000465593	ENST00000392935		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
intron-5UTR	ENST00000465593	ENST00000522572		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
intron-5UTR	ENST00000465593	ENST00000521158		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
intron-5UTR	ENST00000465593	ENST00000022615		TCGA	LD	KIRC	TCGA-B0-4945-01A	DNAH11	chr7	21584767	+	VDAC3	chr8	42251363	+
In-frame	ENST00000262613	ENST00000340415		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
In-frame	ENST00000262613	ENST00000402449		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000528438		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392615		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392614		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392613		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392612		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000262613	ENST00000392610		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
In-frame	ENST00000413388	ENST00000340415		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
In-frame	ENST00000413388	ENST00000402449		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000528438		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392615		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392614		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392613		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392612		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
5CDS-intron	ENST00000413388	ENST00000392610		TCGA	LD	KIRC	TCGA-B0-5075-01A	SLC9A3R1	chr17	72763115	+	RAB37	chr17	72725395	+
Frame-shit	ENST00000378137	ENST00000225402		TCGA	LD	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36861994	+	AATF	chr17	35345818	+
5CDS-intron	ENST00000378137	ENST00000590321		TCGA	LD	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36861994	+	AATF	chr17	35345818	+
Frame-shit	ENST00000325718	ENST00000225402		TCGA	LD	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36861994	+	AATF	chr17	35345818	+
5CDS-intron	ENST00000325718	ENST00000590321		TCGA	LD	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36861994	+	AATF	chr17	35345818	+
intron-3CDS	ENST00000579179	ENST00000225402		TCGA	LD	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36861994	+	AATF	chr17	35345818	+
intron-intron	ENST00000579179	ENST00000590321		TCGA	LD	KIRC	TCGA-B0-5088-01A	MLLT6	chr17	36861994	+	AATF	chr17	35345818	+
Frame-shit	ENST00000404338	ENST00000602212		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
5CDS-5UTR	ENST00000404338	ENST00000602189		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
5CDS-5UTR	ENST00000404338	ENST00000449844		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
5CDS-intron	ENST00000404338	ENST00000439365		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
intron-3CDS	ENST00000598548	ENST00000602212		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
intron-5UTR	ENST00000598548	ENST00000602189		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
intron-5UTR	ENST00000598548	ENST00000449844		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
intron-intron	ENST00000598548	ENST00000439365		TCGA	LD	KIRC	TCGA-B0-5107-01A	ARHGAP35	chr19	47425613	+	NPAS1	chr19	47535536	+
intron-3CDS	ENST00000396757	ENST00000379882		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000396757	ENST00000379868		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000396757	ENST00000379883		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000396757	ENST00000545044		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000396757	ENST00000542096		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000259633	ENST00000379882		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000259633	ENST00000379868		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000259633	ENST00000379883		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000259633	ENST00000545044		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000259633	ENST00000542096		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000490239	ENST00000379882		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000490239	ENST00000379868		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000490239	ENST00000379883		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000490239	ENST00000545044		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000490239	ENST00000542096		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000378431	ENST00000379882		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000378431	ENST00000379868		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000378431	ENST00000379883		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000378431	ENST00000545044		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000378431	ENST00000542096		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000378430	ENST00000379882		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000378430	ENST00000379868		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-3CDS	ENST00000378430	ENST00000379883		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000378430	ENST00000545044		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
intron-intron	ENST00000378430	ENST00000542096		TCGA	LD	KIRC	TCGA-B0-5116-01A	CD72	chr9	35646400	-	DDX58	chr9	32459512	-
Frame-shit	ENST00000298248	ENST00000283550		TCGA	LD	KIRC	TCGA-B0-5117-01A	CRYL1	chr13	21063509	-	SPACA7	chr13	113088799	+
Frame-shit	ENST00000298248	ENST00000375699		TCGA	LD	KIRC	TCGA-B0-5117-01A	CRYL1	chr13	21063509	-	SPACA7	chr13	113088799	+
In-frame	ENST00000382812	ENST00000283550		TCGA	LD	KIRC	TCGA-B0-5117-01A	CRYL1	chr13	21063509	-	SPACA7	chr13	113088799	+
In-frame	ENST00000382812	ENST00000375699		TCGA	LD	KIRC	TCGA-B0-5117-01A	CRYL1	chr13	21063509	-	SPACA7	chr13	113088799	+
5UTR-3CDS	ENST00000480748	ENST00000283550		TCGA	LD	KIRC	TCGA-B0-5117-01A	CRYL1	chr13	21063509	-	SPACA7	chr13	113088799	+
5UTR-3CDS	ENST00000480748	ENST00000375699		TCGA	LD	KIRC	TCGA-B0-5117-01A	CRYL1	chr13	21063509	-	SPACA7	chr13	113088799	+
Frame-shit	ENST00000377705	ENST00000373830		TCGA	LD	KIRC	TCGA-B0-5119-01A	NOL9	chr1	6601890	-	TRNAU1AP	chr1	28904012	+
5CDS-intron	ENST00000377705	ENST00000495995		TCGA	LD	KIRC	TCGA-B0-5119-01A	NOL9	chr1	6601890	-	TRNAU1AP	chr1	28904012	+
Frame-shit	ENST00000266087	ENST00000342085		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000266087	ENST00000441549		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000266087	ENST00000268673		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000266087	ENST00000354836		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000266087	ENST00000389224		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000266087	ENST00000471311		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
Frame-shit	ENST00000382058	ENST00000342085		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000382058	ENST00000441549		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000382058	ENST00000268673		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000382058	ENST00000354836		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000382058	ENST00000389224		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000382058	ENST00000471311		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
Frame-shit	ENST00000397426	ENST00000342085		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000397426	ENST00000441549		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000397426	ENST00000268673		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000397426	ENST00000354836		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000397426	ENST00000389224		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
5CDS-intron	ENST00000397426	ENST00000471311		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-3CDS	ENST00000465418	ENST00000342085		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-intron	ENST00000465418	ENST00000441549		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-intron	ENST00000465418	ENST00000268673		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-intron	ENST00000465418	ENST00000354836		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-intron	ENST00000465418	ENST00000389224		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-intron	ENST00000465418	ENST00000471311		TCGA	LD	KIRC	TCGA-B0-5692-01A	FBXO7	chr22	32883815	+	PDPK1	chr16	2645794	+
intron-3CDS	ENST00000345136	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000345136	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000345136	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000345136	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000345136	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000345136	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000345136	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000357649	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000357649	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000357649	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000357649	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000357649	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000357649	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000357649	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354589	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354589	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354589	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354589	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354589	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000354589	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000354589	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000398774	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000398774	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000398774	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000398774	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000398774	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000398774	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000398774	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000322810	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000322810	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000322810	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000322810	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000322810	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000322810	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000322810	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354958	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354958	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354958	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354958	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000354958	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000354958	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000354958	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
In-frame	ENST00000356346	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
In-frame	ENST00000356346	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
In-frame	ENST00000356346	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
In-frame	ENST00000356346	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
In-frame	ENST00000356346	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000356346	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000356346	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000436759	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000436759	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000436759	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000436759	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000436759	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000436759	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000436759	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000527096	ENST00000574590		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000527096	ENST00000575318		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000527096	ENST00000572904		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000527096	ENST00000262419		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000527096	ENST00000432791		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000527096	ENST00000393476		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000527096	ENST00000576248		TCGA	LD	KIRC	TCGA-B0-5698-01A	PLEC	chr8	145047571	-	KANSL1	chr17	44145033	-
In-frame	ENST00000263816	ENST00000453153		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
In-frame	ENST00000263816	ENST00000453929		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
5CDS-5UTR	ENST00000263816	ENST00000495505		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
In-frame	ENST00000443831	ENST00000453153		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
In-frame	ENST00000443831	ENST00000453929		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
5CDS-5UTR	ENST00000443831	ENST00000495505		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
intron-3CDS	ENST00000461418	ENST00000453153		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
intron-3CDS	ENST00000461418	ENST00000453929		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
intron-5UTR	ENST00000461418	ENST00000495505		TCGA	LD	KIRC	TCGA-B0-5701-01A	LRP2	chr2	170163791	-	FASTKD1	chr2	170388000	-
Frame-shit	ENST00000253925	ENST00000301838		TCGA	LD	KIRC	TCGA-B0-5701-01A	PPFIA1	chr11	70118542	+	FADD	chr11	70052239	+
Frame-shit	ENST00000389547	ENST00000301838		TCGA	LD	KIRC	TCGA-B0-5701-01A	PPFIA1	chr11	70118542	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000530548	ENST00000301838		TCGA	LD	KIRC	TCGA-B0-5701-01A	PPFIA1	chr11	70118542	+	FADD	chr11	70052239	+
5UTR-3CDS	ENST00000231061	ENST00000521264		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
5UTR-3CDS	ENST00000231061	ENST00000522314		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
5UTR-3CDS	ENST00000231061	ENST00000520382		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
5UTR-3CDS	ENST00000231061	ENST00000524142		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
5UTR-3CDS	ENST00000231061	ENST00000313115		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
5UTR-3CDS	ENST00000231061	ENST00000522710		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
intron-3CDS	ENST00000537849	ENST00000521264		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
intron-3CDS	ENST00000537849	ENST00000522314		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
intron-3CDS	ENST00000537849	ENST00000520382		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
intron-3CDS	ENST00000537849	ENST00000524142		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
intron-3CDS	ENST00000537849	ENST00000313115		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
intron-3CDS	ENST00000537849	ENST00000522710		TCGA	LD	KIRC	TCGA-B4-5838-01A	SPARC	chr5	151066426	-	ATOX1	chr5	151126010	-
Frame-shit	ENST00000373635	ENST00000349938		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
5CDS-3UTR	ENST00000373635	ENST00000483477		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
Frame-shit	ENST00000308696	ENST00000349938		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
5CDS-3UTR	ENST00000308696	ENST00000483477		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
Frame-shit	ENST00000409643	ENST00000349938		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
5CDS-3UTR	ENST00000409643	ENST00000483477		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
3UTR-3CDS	ENST00000488354	ENST00000349938		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
3UTR-3UTR	ENST00000488354	ENST00000483477		TCGA	LD	KIRC	TCGA-B8-4143-01A	PSMD1	chr2	231951895	+	ARMC9	chr2	232099937	+
Frame-shit	ENST00000372141	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
Frame-shit	ENST00000404547	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
Frame-shit	ENST00000372142	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
Frame-shit	ENST00000404576	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
Frame-shit	ENST00000556918	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
intron-3CDS	ENST00000537893	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
intron-3CDS	ENST00000545131	ENST00000370355		TCGA	LD	KIRC	TCGA-B8-5158-01A	NRG3	chr10	84118624	+	SCD	chr10	102114184	+
5CDS-intron	ENST00000310954	ENST00000420470		TCGA	LD	KIRC	TCGA-B8-A54H-01A	SLCO4C1	chr5	101576422	-	ARHGEF38	chr4	106621345	+
5CDS-intron	ENST00000310954	ENST00000508036		TCGA	LD	KIRC	TCGA-B8-A54H-01A	SLCO4C1	chr5	101576422	-	ARHGEF38	chr4	106621345	+
5CDS-intron	ENST00000310954	ENST00000265154		TCGA	LD	KIRC	TCGA-B8-A54H-01A	SLCO4C1	chr5	101576422	-	ARHGEF38	chr4	106621345	+
intron-3CDS	ENST00000560371	ENST00000440884		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000560371	ENST00000416682		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000560371	ENST00000429436		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000560371	ENST00000303622		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000560371	ENST00000216288		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000560371	ENST00000553942		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000560371	ENST00000335102		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3UTR	ENST00000560371	ENST00000561071		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000440884		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000416682		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000429436		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000303622		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000216288		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000553942		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000347662	ENST00000335102		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3UTR	ENST00000347662	ENST00000561071		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000440884		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000416682		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000429436		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000303622		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000216288		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000553942		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000392745	ENST00000335102		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3UTR	ENST00000392745	ENST00000561071		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000440884		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000416682		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000429436		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000303622		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000216288		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000553942		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3CDS	ENST00000539721	ENST00000335102		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
intron-3UTR	ENST00000539721	ENST00000561071		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000440884		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000416682		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000429436		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000303622		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000216288		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000553942		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3CDS	ENST00000351691	ENST00000335102		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
5UTR-3UTR	ENST00000351691	ENST00000561071		TCGA	LD	KIRC	TCGA-B8-A54J-01A	TRAF3	chr14	103296809	+	MARK3	chr14	103894724	+
In-frame	ENST00000373635	ENST00000349938		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
5CDS-3UTR	ENST00000373635	ENST00000483477		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
In-frame	ENST00000308696	ENST00000349938		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
5CDS-3UTR	ENST00000308696	ENST00000483477		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
In-frame	ENST00000409643	ENST00000349938		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
5CDS-3UTR	ENST00000409643	ENST00000483477		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
intron-3CDS	ENST00000488354	ENST00000349938		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
intron-3UTR	ENST00000488354	ENST00000483477		TCGA	LD	KIRC	TCGA-BP-4331-01A	PSMD1	chr2	232003564	+	ARMC9	chr2	232196505	+
Frame-shit	ENST00000378460	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
5CDS-intron	ENST00000378460	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
5UTR-3CDS	ENST00000530326	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
5UTR-intron	ENST00000530326	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
intron-3CDS	ENST00000528071	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
intron-intron	ENST00000528071	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
intron-3CDS	ENST00000528501	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
intron-intron	ENST00000528501	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
intron-3CDS	ENST00000531016	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
intron-intron	ENST00000531016	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
Frame-shit	ENST00000532747	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
5CDS-intron	ENST00000532747	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
Frame-shit	ENST00000526870	ENST00000227756		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
5CDS-intron	ENST00000526870	ENST00000526064		TCGA	LD	KIRC	TCGA-BP-4343-01A	NUP160	chr11	47869400	-	GALNT18	chr11	11470483	-
5UTR-5UTR	ENST00000401950	ENST00000336726		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000401950	ENST00000403975		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000333027	ENST00000336726		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000333027	ENST00000403975		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000323630	ENST00000336726		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000323630	ENST00000403975		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000351488	ENST00000336726		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-5UTR	ENST00000351488	ENST00000403975		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
intron-5UTR	ENST00000406629	ENST00000336726		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
intron-5UTR	ENST00000406629	ENST00000403975		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
3UTR-5UTR	ENST00000415511	ENST00000336726		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
3UTR-5UTR	ENST00000415511	ENST00000403975		TCGA	LD	KIRC	TCGA-BP-4352-01A	MTMR3	chr22	30279348	+	HORMAD2	chr22	30489905	+
5UTR-3CDS	ENST00000415881	ENST00000379374		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5UTR-3CDS	ENST00000415881	ENST00000537599		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5UTR-3CDS	ENST00000415881	ENST00000535894		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5UTR-3CDS	ENST00000415881	ENST00000418858		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5UTR-intron	ENST00000415881	ENST00000475778		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000404933	ENST00000379374		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000404933	ENST00000537599		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000404933	ENST00000535894		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000404933	ENST00000418858		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5CDS-intron	ENST00000404933	ENST00000475778		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000379404	ENST00000379374		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000379404	ENST00000537599		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000379404	ENST00000535894		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000379404	ENST00000418858		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5CDS-intron	ENST00000379404	ENST00000475778		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
3UTR-3CDS	ENST00000478094	ENST00000379374		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
3UTR-3CDS	ENST00000478094	ENST00000537599		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
3UTR-3CDS	ENST00000478094	ENST00000535894		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
3UTR-3CDS	ENST00000478094	ENST00000418858		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
3UTR-intron	ENST00000478094	ENST00000475778		TCGA	LD	KIRC	TCGA-BP-4352-01A	SMS	chrX	21958991	+	PHEX	chrX	22151640	+
5CDS-5UTR	ENST00000380737	ENST00000521913		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000380737	ENST00000311151		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000380737	ENST00000523027		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-intron	ENST00000380737	ENST00000521983		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000315985	ENST00000521913		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000315985	ENST00000311151		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-5UTR	ENST00000315985	ENST00000523027		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
5CDS-intron	ENST00000315985	ENST00000521983		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
3UTR-5UTR	ENST00000523473	ENST00000521913		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
3UTR-5UTR	ENST00000523473	ENST00000311151		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
3UTR-5UTR	ENST00000523473	ENST00000523027		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
3UTR-intron	ENST00000523473	ENST00000521983		TCGA	LD	KIRC	TCGA-BP-4354-01A	PPP2R2A	chr8	26151256	+	DPYSL2	chr8	26439485	+
intron-intron	ENST00000462705	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000462705	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000393785	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000481632	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000471418	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000357258	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000464560	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
5UTR-intron	ENST00000488663	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000471858		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000308611		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000295863		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000490004		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
intron-intron	ENST00000474710	ENST00000440122		TCGA	LD	KIRC	TCGA-BP-4756-01A	ZBTB20	chr3	114519948	-	CD200R1	chr3	112666771	-
Frame-shit	ENST00000225296	ENST00000262467		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000345221		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000269280		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000572272		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000354411		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000577119		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000571307		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-3CDS	ENST00000433302	ENST00000262467		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000345221		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000269280		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000572272		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000354411		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000577119		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000571307		TCGA	LD	KIRC	TCGA-BP-4761-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-3CDS	ENST00000545826	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000545826	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-intron	ENST00000545826	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000513237	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000513237	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-intron	ENST00000513237	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000540549	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000540549	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-intron	ENST00000540549	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-3CDS	ENST00000380013	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-3CDS	ENST00000380013	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-intron	ENST00000380013	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-3CDS	ENST00000305737	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-3CDS	ENST00000305737	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-intron	ENST00000305737	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-3CDS	ENST00000394764	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-3CDS	ENST00000394764	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5UTR-intron	ENST00000394764	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
3UTR-3CDS	ENST00000504042	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
3UTR-3CDS	ENST00000504042	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
3UTR-intron	ENST00000504042	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000413648	ENST00000361564		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-3CDS	ENST00000413648	ENST00000512478		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
intron-intron	ENST00000413648	ENST00000505745		TCGA	LD	KIRC	TCGA-BP-4770-01A	TET2	chr4	106111662	+	OSTC	chr4	109588403	+
5CDS-5UTR	ENST00000264607	ENST00000519846		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000264607	ENST00000518592		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000264607	ENST00000325897		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000264607	ENST00000518858		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
intron-5UTR	ENST00000469885	ENST00000519846		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
intron-intron	ENST00000469885	ENST00000518592		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
intron-intron	ENST00000469885	ENST00000325897		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
intron-intron	ENST00000469885	ENST00000518858		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-5UTR	ENST00000409297	ENST00000519846		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000409297	ENST00000518592		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000409297	ENST00000325897		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
5CDS-intron	ENST00000409297	ENST00000518858		TCGA	LD	KIRC	TCGA-BP-4782-01A	ASB1	chr2	239353368	+	CLVS1	chr8	62204877	+
intron-3UTR	ENST00000369325	ENST00000261799		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-intron	ENST00000369325	ENST00000523456		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-3UTR	ENST00000369327	ENST00000261799		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-intron	ENST00000369327	ENST00000523456		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-3UTR	ENST00000369332	ENST00000261799		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-intron	ENST00000369332	ENST00000523456		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-3UTR	ENST00000369329	ENST00000261799		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-intron	ENST00000369329	ENST00000523456		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-3UTR	ENST00000479630	ENST00000261799		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-intron	ENST00000479630	ENST00000523456		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-3UTR	ENST00000369320	ENST00000261799		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
intron-intron	ENST00000369320	ENST00000523456		TCGA	LD	KIRC	TCGA-BP-4790-01A	MAP3K7	chr6	91266254	-	PDGFRB	chr5	149494024	-
Frame-shit	ENST00000305783	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
Frame-shit	ENST00000305783	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
Frame-shit	ENST00000305783	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
Frame-shit	ENST00000305783	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
In-frame	ENST00000305783	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
5CDS-3UTR	ENST00000305783	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
intron-3CDS	ENST00000442346	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
intron-3CDS	ENST00000442346	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
intron-3CDS	ENST00000442346	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
intron-3CDS	ENST00000442346	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
intron-3CDS	ENST00000442346	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
intron-3UTR	ENST00000442346	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4790-01A	RNFT1	chr17	58039901	-	VMP1	chr17	57917129	+
In-frame	ENST00000417235	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000417235	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000417235	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
intron-3CDS	ENST00000424070	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
intron-intron	ENST00000424070	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
intron-intron	ENST00000424070	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
3UTR-3CDS	ENST00000575558	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
3UTR-intron	ENST00000575558	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
3UTR-intron	ENST00000575558	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
In-frame	ENST00000536134	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000536134	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000536134	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
In-frame	ENST00000573854	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000573854	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000573854	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
In-frame	ENST00000219054	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000219054	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000219054	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
In-frame	ENST00000575690	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000575690	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000575690	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
In-frame	ENST00000396104	ENST00000205557		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000396104	ENST00000574094		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000396104	ENST00000575728		TCGA	LD	KIRC	TCGA-BP-4801-01A	ACSM2A	chr16	20492243	+	ABCC6	chr16	16263710	-
5CDS-intron	ENST00000255674	ENST00000581982		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
5CDS-5UTR	ENST00000255674	ENST00000280200		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
5CDS-intron	ENST00000255674	ENST00000577287		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
5CDS-5UTR	ENST00000255674	ENST00000582621		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
3UTR-intron	ENST00000454359	ENST00000581982		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
3UTR-5UTR	ENST00000454359	ENST00000280200		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
3UTR-intron	ENST00000454359	ENST00000577287		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
3UTR-5UTR	ENST00000454359	ENST00000582621		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-intron	ENST00000437017	ENST00000581982		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-5UTR	ENST00000437017	ENST00000280200		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-intron	ENST00000437017	ENST00000577287		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-5UTR	ENST00000437017	ENST00000582621		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-intron	ENST00000579986	ENST00000581982		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-5UTR	ENST00000579986	ENST00000280200		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-intron	ENST00000579986	ENST00000577287		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
intron-5UTR	ENST00000579986	ENST00000582621		TCGA	LD	KIRC	TCGA-BP-4801-01A	RTTN	chr18	67715207	-	CD226	chr18	67614669	-
In-frame	ENST00000497571	ENST00000537576		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
In-frame	ENST00000497571	ENST00000305242		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
In-frame	ENST00000497571	ENST00000545014		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000497571	ENST00000480504		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5CDS-intron	ENST00000497571	ENST00000239715		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000542957	ENST00000537576		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000542957	ENST00000305242		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000542957	ENST00000545014		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000542957	ENST00000480504		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000542957	ENST00000239715		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5UTR-3CDS	ENST00000173785	ENST00000537576		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5UTR-3CDS	ENST00000173785	ENST00000305242		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5UTR-3CDS	ENST00000173785	ENST00000545014		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5UTR-intron	ENST00000173785	ENST00000480504		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
5UTR-intron	ENST00000173785	ENST00000239715		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000469435	ENST00000537576		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000469435	ENST00000305242		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-3CDS	ENST00000469435	ENST00000545014		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000469435	ENST00000480504		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
intron-intron	ENST00000469435	ENST00000239715		TCGA	LD	KIRC	TCGA-BP-4962-01A	KLF6	chr10	3822298	-	ARMC4	chr10	28196706	-
Frame-shit	ENST00000520931	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
Frame-shit	ENST00000389378	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
Frame-shit	ENST00000523338	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
Frame-shit	ENST00000315050	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
In-frame	ENST00000522226	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
In-frame	ENST00000518977	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
In-frame	ENST00000521591	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
Frame-shit	ENST00000524280	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
Frame-shit	ENST00000523200	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
intron-3CDS	ENST00000521423	ENST00000328668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	ARSI	chr5	149678175	-
5CDS-5UTR	ENST00000520931	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000520931	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000520931	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000389378	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000389378	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000389378	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000523338	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000523338	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000523338	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000315050	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000315050	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000315050	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000522226	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000522226	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000522226	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000518977	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000518977	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000518977	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000521591	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000521591	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000521591	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000524280	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000524280	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000524280	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-5UTR	ENST00000523200	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000523200	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
5CDS-intron	ENST00000523200	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
intron-5UTR	ENST00000521423	ENST00000348628		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
intron-intron	ENST00000521423	ENST00000351010		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
intron-intron	ENST00000521423	ENST00000398376		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	CAMK2A	chr5	149669286	-
Frame-shit	ENST00000520931	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000520931	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
Frame-shit	ENST00000389378	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000389378	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
Frame-shit	ENST00000523338	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523338	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
Frame-shit	ENST00000315050	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000315050	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
Frame-shit	ENST00000522226	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000522226	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
Frame-shit	ENST00000518977	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000518977	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
Frame-shit	ENST00000521591	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000521591	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
In-frame	ENST00000524280	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000524280	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
In-frame	ENST00000523200	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
5CDS-intron	ENST00000523200	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-3CDS	ENST00000521423	ENST00000451292		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000377797		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000445265		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000323668		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000439160		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000394269		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000504761		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000513346		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
intron-intron	ENST00000521423	ENST00000506063		TCGA	LD	KIRC	TCGA-BP-4965-01A	TNIP1	chr5	150439879	-	TCOF1	chr5	149762625	+
3UTR-3CDS	ENST00000336314	ENST00000331825		TCGA	LD	KIRC	TCGA-BP-4972-01A	LARP1	chr5	154194908	+	FTL	chr19	49468820	+
intron-3CDS	ENST00000250457	ENST00000310581		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000250457	ENST00000296820		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000250457	ENST00000334602		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000250457	ENST00000508104		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-intron	ENST00000250457	ENST00000522877		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000553215	ENST00000310581		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000553215	ENST00000296820		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000553215	ENST00000334602		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000553215	ENST00000508104		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-intron	ENST00000553215	ENST00000522877		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000547327	ENST00000310581		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000547327	ENST00000296820		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000547327	ENST00000334602		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000547327	ENST00000508104		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-intron	ENST00000547327	ENST00000522877		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000557521	ENST00000310581		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000557521	ENST00000296820		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000557521	ENST00000334602		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000557521	ENST00000508104		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
intron-intron	ENST00000557521	ENST00000522877		TCGA	LD	KIRC	TCGA-BP-4973-01A	EGLN3	chr14	34487807	-	TERT	chr5	1282739	-
Frame-shit	ENST00000381809	ENST00000453981		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000381809	ENST00000432829		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000381809	ENST00000469391		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000381809	ENST00000382331		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000381809	ENST00000382329		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
5CDS-intron	ENST00000381809	ENST00000493666		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
intron-3CDS	ENST00000359883	ENST00000453981		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
intron-3CDS	ENST00000359883	ENST00000432829		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
intron-3CDS	ENST00000359883	ENST00000469391		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
intron-3CDS	ENST00000359883	ENST00000382331		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
intron-3CDS	ENST00000359883	ENST00000382329		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
intron-intron	ENST00000359883	ENST00000493666		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000447596	ENST00000453981		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000447596	ENST00000432829		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000447596	ENST00000469391		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000447596	ENST00000382331		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
Frame-shit	ENST00000447596	ENST00000382329		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
5CDS-intron	ENST00000447596	ENST00000493666		TCGA	LD	KIRC	TCGA-BP-4983-01A	AK3	chr9	4740937	-	DOCK8	chr9	382513	+
5UTR-3CDS	ENST00000433688	ENST00000321949		TCGA	LD	KIRC	TCGA-BP-4983-01A	C11orf95	chr11	63535956	-	CRTC1	chr19	18853720	+
5UTR-3CDS	ENST00000433688	ENST00000338797		TCGA	LD	KIRC	TCGA-BP-4983-01A	C11orf95	chr11	63535956	-	CRTC1	chr19	18853720	+
5UTR-3CDS	ENST00000433688	ENST00000594658		TCGA	LD	KIRC	TCGA-BP-4983-01A	C11orf95	chr11	63535956	-	CRTC1	chr19	18853720	+
5UTR-3CDS	ENST00000433688	ENST00000601916		TCGA	LD	KIRC	TCGA-BP-4983-01A	C11orf95	chr11	63535956	-	CRTC1	chr19	18853720	+
3UTR-5UTR	ENST00000381573	ENST00000382303		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-3UTR	ENST00000381573	ENST00000489369		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-5UTR	ENST00000381573	ENST00000382297		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-intron	ENST00000381573	ENST00000382293		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-5UTR	ENST00000381577	ENST00000382303		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-3UTR	ENST00000381577	ENST00000489369		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-5UTR	ENST00000381577	ENST00000382297		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
3UTR-intron	ENST00000381577	ENST00000382293		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000498261	ENST00000382303		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
intron-3UTR	ENST00000498261	ENST00000489369		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000498261	ENST00000382297		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
intron-intron	ENST00000498261	ENST00000382293		TCGA	LD	KIRC	TCGA-BP-4983-01A	CD274	chr9	5468208	+	KANK1	chr9	676890	+
Frame-shit	ENST00000520367	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000520367	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000520367	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000520367	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000520367	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
Frame-shit	ENST00000518137	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518137	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518137	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518137	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518137	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-3CDS	ENST00000523999	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000523999	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000523999	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000523999	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000523999	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
Frame-shit	ENST00000323854	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000323854	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000323854	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000323854	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000323854	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-3CDS	ENST00000522751	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000522751	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000522751	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000522751	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000522751	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-3CDS	ENST00000520284	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000520284	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000520284	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000520284	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000520284	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-3CDS	ENST00000517795	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000517795	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000517795	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000517795	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000517795	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-3CDS	ENST00000518907	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518907	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518907	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518907	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518907	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-3CDS	ENST00000521847	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000521847	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000521847	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000521847	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000521847	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
Frame-shit	ENST00000518644	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518644	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518644	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518644	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000518644	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-3CDS	ENST00000518901	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518901	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518901	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518901	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5UTR-intron	ENST00000518901	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
Frame-shit	ENST00000517295	ENST00000335464		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000517295	ENST00000417024		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000517295	ENST00000582773		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000517295	ENST00000582330		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000517295	ENST00000584171		TCGA	LD	KIRC	TCGA-BP-4983-01A	ENDOV	chr17	78397432	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000417746	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000417746	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000456383	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000381434	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
intron-intron	ENST00000463336	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	IL33	chr9	6256082	+	CBWD1	chr9	173620	-
5CDS-intron	ENST00000382303	ENST00000515723		TCGA	LD	KIRC	TCGA-BP-4983-01A	KANK1	chr9	713464	+	CARM1P1	chr9	2948282	-
3UTR-intron	ENST00000489369	ENST00000515723		TCGA	LD	KIRC	TCGA-BP-4983-01A	KANK1	chr9	713464	+	CARM1P1	chr9	2948282	-
5CDS-intron	ENST00000382297	ENST00000515723		TCGA	LD	KIRC	TCGA-BP-4983-01A	KANK1	chr9	713464	+	CARM1P1	chr9	2948282	-
5CDS-intron	ENST00000382293	ENST00000515723		TCGA	LD	KIRC	TCGA-BP-4983-01A	KANK1	chr9	713464	+	CARM1P1	chr9	2948282	-
In-frame	ENST00000259021	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000259021	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000259021	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000259021	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000259021	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000259021	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000454930	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000454930	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000454930	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000454930	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000454930	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000454930	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000509773	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000509773	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000509773	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000509773	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000509773	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000509773	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000510819	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000510819	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000510819	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000510819	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000510819	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000510819	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000424009	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000424009	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000424009	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000424009	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000424009	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000424009	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000503935	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000503935	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000503935	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000503935	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000503935	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000503935	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000435742	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
In-frame	ENST00000435742	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000435742	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000435742	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000435742	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000435742	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
intron-3CDS	ENST00000513980	ENST00000331134		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
intron-3CDS	ENST00000513980	ENST00000374747		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
intron-5UTR	ENST00000513980	ENST00000539314		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
intron-intron	ENST00000513980	ENST00000572760		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
intron-intron	ENST00000513980	ENST00000573876		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
intron-intron	ENST00000513980	ENST00000574344		TCGA	LD	KIRC	TCGA-BP-4983-01A	KAT7	chr17	47895373	+	NPLOC4	chr17	79589304	-
Frame-shit	ENST00000569840	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
Frame-shit	ENST00000569840	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000569840	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000569840	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000569840	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000569840	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
Frame-shit	ENST00000301618	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
Frame-shit	ENST00000301618	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000301618	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000301618	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000301618	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000301618	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
In-frame	ENST00000565675	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
In-frame	ENST00000565675	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000565675	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000565675	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000565675	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000565675	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
3UTR-3CDS	ENST00000374998	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
3UTR-3CDS	ENST00000374998	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
3UTR-5UTR	ENST00000374998	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
3UTR-5UTR	ENST00000374998	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
3UTR-intron	ENST00000374998	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
3UTR-intron	ENST00000374998	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
Frame-shit	ENST00000428789	ENST00000262291		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
Frame-shit	ENST00000428789	ENST00000537567		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000428789	ENST00000539763		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000428789	ENST00000536180		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000428789	ENST00000545362		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
5CDS-intron	ENST00000428789	ENST00000588617		TCGA	LD	KIRC	TCGA-BP-4983-01A	MGAT5B	chr17	74878380	+	VMP1	chr17	57842332	+
Frame-shit	ENST00000454239	ENST00000381971		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
Frame-shit	ENST00000454239	ENST00000324333		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5CDS-5UTR	ENST00000454239	ENST00000461870		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
In-frame	ENST00000381890	ENST00000381971		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
In-frame	ENST00000381890	ENST00000324333		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5CDS-5UTR	ENST00000381890	ENST00000461870		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
Frame-shit	ENST00000475086	ENST00000381971		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
Frame-shit	ENST00000475086	ENST00000324333		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5CDS-5UTR	ENST00000475086	ENST00000461870		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5UTR-3CDS	ENST00000381895	ENST00000381971		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5UTR-3CDS	ENST00000381895	ENST00000324333		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5UTR-5UTR	ENST00000381895	ENST00000461870		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5UTR-3CDS	ENST00000223517	ENST00000381971		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5UTR-3CDS	ENST00000223517	ENST00000324333		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
5UTR-5UTR	ENST00000223517	ENST00000461870		TCGA	LD	KIRC	TCGA-BP-4983-01A	SPATA6L	chr9	4661899	-	GLIS3	chr9	3937189	-
Frame-shit	ENST00000360943	ENST00000393066		TCGA	LD	KIRC	TCGA-BP-4983-01A	UBE2Z	chr17	46993549	+	TRIM37	chr17	57089807	-
Frame-shit	ENST00000360943	ENST00000262294		TCGA	LD	KIRC	TCGA-BP-4983-01A	UBE2Z	chr17	46993549	+	TRIM37	chr17	57089807	-
Frame-shit	ENST00000360943	ENST00000376149		TCGA	LD	KIRC	TCGA-BP-4983-01A	UBE2Z	chr17	46993549	+	TRIM37	chr17	57089807	-
Frame-shit	ENST00000360943	ENST00000393065		TCGA	LD	KIRC	TCGA-BP-4983-01A	UBE2Z	chr17	46993549	+	TRIM37	chr17	57089807	-
5CDS-intron	ENST00000360943	ENST00000584889		TCGA	LD	KIRC	TCGA-BP-4983-01A	UBE2Z	chr17	46993549	+	TRIM37	chr17	57089807	-
Frame-shit	ENST00000276893	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
In-frame	ENST00000276893	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
In-frame	ENST00000276893	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
Frame-shit	ENST00000276893	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000276893	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000276893	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000276893	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000276893	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000276893	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
Frame-shit	ENST00000381373	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
In-frame	ENST00000381373	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
In-frame	ENST00000381373	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
Frame-shit	ENST00000381373	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000381373	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000381373	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000381373	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000381373	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
5CDS-intron	ENST00000381373	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-3CDS	ENST00000485617	ENST00000356521		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-3CDS	ENST00000485617	ENST00000377400		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-3CDS	ENST00000485617	ENST00000382447		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-3CDS	ENST00000485617	ENST00000314367		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-intron	ENST00000485617	ENST00000475411		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-intron	ENST00000485617	ENST00000377447		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-intron	ENST00000485617	ENST00000431099		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-intron	ENST00000485617	ENST00000382393		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
intron-intron	ENST00000485617	ENST00000382389		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6421142	+	CBWD1	chr9	121573	-
Frame-shit	ENST00000276893	ENST00000382100		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
Frame-shit	ENST00000276893	ENST00000382099		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
5CDS-intron	ENST00000276893	ENST00000478776		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
intron-3CDS	ENST00000381373	ENST00000382100		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
intron-3CDS	ENST00000381373	ENST00000382099		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
intron-intron	ENST00000381373	ENST00000478776		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
intron-3CDS	ENST00000485617	ENST00000382100		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
intron-3CDS	ENST00000485617	ENST00000382099		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
intron-intron	ENST00000485617	ENST00000478776		TCGA	LD	KIRC	TCGA-BP-4983-01A	UHRF2	chr9	6434173	+	VLDLR	chr9	2635453	+
Frame-shit	ENST00000303127	ENST00000394945		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
Frame-shit	ENST00000303127	ENST00000282223		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
5CDS-intron	ENST00000303127	ENST00000509978		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
Frame-shit	ENST00000515209	ENST00000394945		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
Frame-shit	ENST00000515209	ENST00000282223		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
5CDS-intron	ENST00000515209	ENST00000509978		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
intron-3CDS	ENST00000506310	ENST00000394945		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
intron-3CDS	ENST00000506310	ENST00000282223		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
intron-intron	ENST00000506310	ENST00000509978		TCGA	LD	KIRC	TCGA-BP-4986-01A	LMAN2	chr5	176761285	-	SPOCK1	chr5	136448250	-
Frame-shit	ENST00000280969	ENST00000359660		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
Frame-shit	ENST00000280969	ENST00000542267		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
In-frame	ENST00000280969	ENST00000496714		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
Frame-shit	ENST00000321757	ENST00000359660		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
Frame-shit	ENST00000321757	ENST00000542267		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
In-frame	ENST00000321757	ENST00000496714		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
Frame-shit	ENST00000518095	ENST00000359660		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
Frame-shit	ENST00000518095	ENST00000542267		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
In-frame	ENST00000518095	ENST00000496714		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
intron-3CDS	ENST00000521838	ENST00000359660		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
intron-3CDS	ENST00000521838	ENST00000542267		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
intron-3CDS	ENST00000521838	ENST00000496714		TCGA	LD	KIRC	TCGA-BP-4986-01A	MAT2B	chr5	162939202	+	FBXL17	chr5	107216880	-
5CDS-5UTR	ENST00000376929	ENST00000359895		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000376929	ENST00000356618		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000376929	ENST00000355841		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-intron	ENST00000376929	ENST00000505746		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000376929	ENST00000393551		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000376929	ENST00000355572		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
intron-5UTR	ENST00000506690	ENST00000359895		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
intron-5UTR	ENST00000506690	ENST00000356618		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
intron-5UTR	ENST00000506690	ENST00000355841		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
intron-intron	ENST00000506690	ENST00000505746		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
intron-5UTR	ENST00000506690	ENST00000393551		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
intron-5UTR	ENST00000506690	ENST00000355572		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000389805	ENST00000359895		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000389805	ENST00000356618		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000389805	ENST00000355841		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-intron	ENST00000389805	ENST00000505746		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000389805	ENST00000393551		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000389805	ENST00000355572		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000402874	ENST00000359895		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000402874	ENST00000356618		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000402874	ENST00000355841		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-intron	ENST00000402874	ENST00000505746		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000402874	ENST00000393551		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000402874	ENST00000355572		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000510187	ENST00000359895		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000510187	ENST00000356618		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000510187	ENST00000355841		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-intron	ENST00000510187	ENST00000505746		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000510187	ENST00000393551		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000510187	ENST00000355572		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000360718	ENST00000359895		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000360718	ENST00000356618		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000360718	ENST00000355841		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-intron	ENST00000360718	ENST00000505746		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000360718	ENST00000393551		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
5CDS-5UTR	ENST00000360718	ENST00000355572		TCGA	LD	KIRC	TCGA-BP-4986-01A	SQSTM1	chr5	179251323	+	PDLIM7	chr5	176923524	-
In-frame	ENST00000520931	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000520931	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000520931	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000389378	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000389378	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000389378	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000523338	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000523338	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000523338	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000315050	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
In-frame	ENST00000315050	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000315050	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000522226	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000522226	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000522226	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000518977	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000518977	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000518977	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000521591	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000521591	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000521591	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000524280	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000524280	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000524280	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000523200	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000523200	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
5CDS-3UTR	ENST00000523200	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
intron-3CDS	ENST00000521423	ENST00000435489		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
intron-3CDS	ENST00000521423	ENST00000311946		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
intron-3UTR	ENST00000521423	ENST00000521390		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNIP1	chr5	150441688	-	NIPAL4	chr5	156890102	+
Frame-shit	ENST00000337273	ENST00000319449		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000337273	ENST00000377001		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000337273	ENST00000437570		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000337273	ENST00000393438		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-intron	ENST00000337273	ENST00000508797		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
Frame-shit	ENST00000454282	ENST00000319449		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000454282	ENST00000377001		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000454282	ENST00000437570		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000454282	ENST00000393438		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-intron	ENST00000454282	ENST00000508797		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5UTR-3CDS	ENST00000447967	ENST00000319449		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5UTR-3UTR	ENST00000447967	ENST00000377001		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5UTR-3UTR	ENST00000447967	ENST00000437570		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5UTR-3UTR	ENST00000447967	ENST00000393438		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5UTR-intron	ENST00000447967	ENST00000508797		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
Frame-shit	ENST00000523768	ENST00000319449		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000523768	ENST00000377001		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000523768	ENST00000437570		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-3UTR	ENST00000523768	ENST00000393438		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-intron	ENST00000523768	ENST00000508797		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3CDS	ENST00000513944	ENST00000319449		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3UTR	ENST00000513944	ENST00000377001		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3UTR	ENST00000513944	ENST00000437570		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3UTR	ENST00000513944	ENST00000393438		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-intron	ENST00000513944	ENST00000508797		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3CDS	ENST00000506351	ENST00000319449		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3UTR	ENST00000506351	ENST00000377001		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3UTR	ENST00000506351	ENST00000437570		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-3UTR	ENST00000506351	ENST00000393438		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
intron-intron	ENST00000506351	ENST00000508797		TCGA	LD	KIRC	TCGA-BP-4986-01A	TNPO1	chr5	72112579	+	RUFY1	chr5	179032877	+
5CDS-5UTR	ENST00000396137	ENST00000453514		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
5CDS-5UTR	ENST00000396137	ENST00000423041		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
5CDS-5UTR	ENST00000396137	ENST00000504233		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
5CDS-5UTR	ENST00000396137	ENST00000428308		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
5CDS-intron	ENST00000396137	ENST00000502269		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
5CDS-5UTR	ENST00000396137	ENST00000296783		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
intron-5UTR	ENST00000412001	ENST00000453514		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
intron-5UTR	ENST00000412001	ENST00000423041		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
intron-5UTR	ENST00000412001	ENST00000504233		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
intron-5UTR	ENST00000412001	ENST00000428308		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
intron-intron	ENST00000412001	ENST00000502269		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
intron-5UTR	ENST00000412001	ENST00000296783		TCGA	LD	KIRC	TCGA-BP-5007-01A	JMY	chr5	78533505	+	PAPD4	chr5	78915435	+
Frame-shit	ENST00000266037	ENST00000462138		TCGA	LD	KIRC	TCGA-BP-5170-01A	DOCK3	chr3	50712731	+	TKT	chr3	53276258	-
Frame-shit	ENST00000266037	ENST00000423525		TCGA	LD	KIRC	TCGA-BP-5170-01A	DOCK3	chr3	50712731	+	TKT	chr3	53276258	-
5CDS-intron	ENST00000266037	ENST00000461139		TCGA	LD	KIRC	TCGA-BP-5170-01A	DOCK3	chr3	50712731	+	TKT	chr3	53276258	-
5CDS-intron	ENST00000266037	ENST00000423516		TCGA	LD	KIRC	TCGA-BP-5170-01A	DOCK3	chr3	50712731	+	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000266037	ENST00000296289		TCGA	LD	KIRC	TCGA-BP-5170-01A	DOCK3	chr3	50712731	+	TKT	chr3	53276258	-
intron-intron	ENST00000507810	ENST00000355178		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
intron-intron	ENST00000507810	ENST00000282185		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
intron-intron	ENST00000507810	ENST00000458350		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
intron-intron	ENST00000507810	ENST00000513443		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
intron-intron	ENST00000507810	ENST00000513634		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
intron-intron	ENST00000507810	ENST00000514253		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
5CDS-intron	ENST00000261486	ENST00000355178		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
5CDS-intron	ENST00000261486	ENST00000282185		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
5CDS-intron	ENST00000261486	ENST00000458350		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
5CDS-intron	ENST00000261486	ENST00000513443		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
5CDS-intron	ENST00000261486	ENST00000513634		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
5CDS-intron	ENST00000261486	ENST00000514253		TCGA	LD	KIRC	TCGA-BP-5175-01A	EPB41L4A	chr5	111754638	-	ATG10	chr5	81548381	+
In-frame	ENST00000480820	ENST00000355893		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000484955		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000359117		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000471745		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-3UTR	ENST00000480820	ENST00000497004		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000469452		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000482628		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000478894		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000480820	ENST00000392822		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
In-frame	ENST00000295930	ENST00000355893		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000484955		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000359117		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000471745		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-3UTR	ENST00000295930	ENST00000497004		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000469452		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000482628		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000478894		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000295930	ENST00000392822		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-3CDS	ENST00000464171	ENST00000355893		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000484955		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000359117		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000471745		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-3UTR	ENST00000464171	ENST00000497004		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000469452		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000482628		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000478894		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000464171	ENST00000392822		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-3CDS	ENST00000312179	ENST00000355893		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000484955		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000359117		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000471745		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-3UTR	ENST00000312179	ENST00000497004		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000469452		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000482628		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000478894		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
intron-5UTR	ENST00000312179	ENST00000392822		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
In-frame	ENST00000475278	ENST00000355893		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000484955		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000359117		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000471745		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-3UTR	ENST00000475278	ENST00000497004		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000469452		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000482628		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000478894		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5CDS-5UTR	ENST00000475278	ENST00000392822		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-3CDS	ENST00000496268	ENST00000355893		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000484955		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000359117		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000471745		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-3UTR	ENST00000496268	ENST00000497004		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000469452		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000482628		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000478894		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
3UTR-5UTR	ENST00000496268	ENST00000392822		TCGA	LD	KIRC	TCGA-BP-5178-01A	RSRC1	chr3	157921034	+	MLF1	chr3	158310223	+
5UTR-3CDS	ENST00000491545	ENST00000268933		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-intron	ENST00000491545	ENST00000515028		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-intron	ENST00000491545	ENST00000541226		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-intron	ENST00000491545	ENST00000537145		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
In-frame	ENST00000435456	ENST00000268933		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000435456	ENST00000515028		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000435456	ENST00000541226		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000435456	ENST00000537145		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
intron-3CDS	ENST00000402844	ENST00000268933		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
intron-intron	ENST00000402844	ENST00000515028		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
intron-intron	ENST00000402844	ENST00000541226		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
intron-intron	ENST00000402844	ENST00000537145		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-3CDS	ENST00000544408	ENST00000268933		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-intron	ENST00000544408	ENST00000515028		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-intron	ENST00000544408	ENST00000541226		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5UTR-intron	ENST00000544408	ENST00000537145		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
In-frame	ENST00000542412	ENST00000268933		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000542412	ENST00000515028		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000542412	ENST00000541226		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000542412	ENST00000537145		TCGA	LD	KIRC	TCGA-BP-5186-01A	SLC25A17	chr22	41215199	-	EPN3	chr17	48616548	+
5CDS-intron	ENST00000258947	ENST00000550404		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000258947	ENST00000261739		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000509507	ENST00000550404		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000509507	ENST00000261739		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000448105	ENST00000550404		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000448105	ENST00000261739		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
intron-intron	ENST00000416445	ENST00000550404		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
intron-intron	ENST00000416445	ENST00000261739		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000508679	ENST00000550404		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
5CDS-intron	ENST00000508679	ENST00000261739		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
intron-intron	ENST00000510997	ENST00000550404		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
intron-intron	ENST00000510997	ENST00000261739		TCGA	LD	KIRC	TCGA-BP-5192-01A	CALCOCO2	chr17	46926739	+	ANKRD13A	chr12	110461851	+
In-frame	ENST00000381971	ENST00000223864		TCGA	LD	KIRC	TCGA-BP-5192-01A	GLIS3	chr9	4117768	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000381971	ENST00000482696		TCGA	LD	KIRC	TCGA-BP-5192-01A	GLIS3	chr9	4117768	-	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000324333	ENST00000223864		TCGA	LD	KIRC	TCGA-BP-5192-01A	GLIS3	chr9	4117768	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000324333	ENST00000482696		TCGA	LD	KIRC	TCGA-BP-5192-01A	GLIS3	chr9	4117768	-	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000461870	ENST00000223864		TCGA	LD	KIRC	TCGA-BP-5192-01A	GLIS3	chr9	4117768	-	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000461870	ENST00000482696		TCGA	LD	KIRC	TCGA-BP-5192-01A	GLIS3	chr9	4117768	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000247833	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000247833	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000247833	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000378815	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000378815	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000378815	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000325555	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000325555	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000325555	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000483530	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000483530	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000483530	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000550536	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000550536	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000550536	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000362025	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000362025	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000362025	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000551641	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000551641	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000551641	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000553099	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000553099	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000553099	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000550847	ENST00000572316		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000550847	ENST00000354968		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000550847	ENST00000393450		TCGA	LD	KIRC	TCGA-BP-5192-01A	RAB3IP	chr12	70150443	+	MYL4	chr17	45286755	+
5CDS-intron	ENST00000325954	ENST00000356767		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000325954	ENST00000393735		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000325954	ENST00000339444		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000325954	ENST00000393730		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000325954	ENST00000306312		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000325954	ENST00000432958		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000325954	ENST00000354356		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000325954	ENST00000393729		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000325954	ENST00000393727		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000325954	ENST00000393723		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000413266	ENST00000356767		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000413266	ENST00000393735		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000413266	ENST00000339444		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000413266	ENST00000393730		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000413266	ENST00000306312		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-intron	ENST00000413266	ENST00000432958		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000413266	ENST00000354356		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000413266	ENST00000393729		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000413266	ENST00000393727		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
5CDS-5UTR	ENST00000413266	ENST00000393723		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000542701	ENST00000356767		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000542701	ENST00000393735		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000542701	ENST00000339444		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000542701	ENST00000393730		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000542701	ENST00000306312		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000542701	ENST00000432958		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000542701	ENST00000354356		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000542701	ENST00000393729		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000542701	ENST00000393727		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000542701	ENST00000393723		TCGA	LD	KIRC	TCGA-BP-5192-01A	RNF10	chr12	121004783	+	SLC26A5	chr7	103019782	-
Frame-shit	ENST00000389629	ENST00000396879		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
Frame-shit	ENST00000389629	ENST00000381761		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
Frame-shit	ENST00000389629	ENST00000354127		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
Frame-shit	ENST00000389629	ENST00000355438		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
Frame-shit	ENST00000389629	ENST00000321596		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
5CDS-intron	ENST00000389629	ENST00000464721		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
3UTR-3CDS	ENST00000462276	ENST00000396879		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
3UTR-3CDS	ENST00000462276	ENST00000381761		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
3UTR-3CDS	ENST00000462276	ENST00000354127		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
3UTR-3CDS	ENST00000462276	ENST00000355438		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
3UTR-3CDS	ENST00000462276	ENST00000321596		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
3UTR-intron	ENST00000462276	ENST00000464721		TCGA	LD	KIRC	TCGA-BP-5192-01A	RTF1	chr15	41730629	+	CATSPER2	chr15	43932694	-
5CDS-5UTR	ENST00000508628	ENST00000537330		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000508628	ENST00000570891		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000508628	ENST00000306801		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000508628	ENST00000544334		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000508628	ENST00000575542		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000456466	ENST00000537330		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000456466	ENST00000570891		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000456466	ENST00000306801		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000456466	ENST00000544334		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000456466	ENST00000575542		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000582970	ENST00000537330		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000582970	ENST00000570891		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000582970	ENST00000306801		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000582970	ENST00000544334		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000582970	ENST00000575542		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000319921	ENST00000537330		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000319921	ENST00000570891		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000319921	ENST00000306801		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000319921	ENST00000544334		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000319921	ENST00000575542		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000336301	ENST00000537330		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000336301	ENST00000570891		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000336301	ENST00000306801		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000336301	ENST00000544334		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-intron	ENST00000336301	ENST00000575542		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000427003	ENST00000537330		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000427003	ENST00000570891		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000427003	ENST00000306801		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000427003	ENST00000544334		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
intron-intron	ENST00000427003	ENST00000575542		TCGA	LD	KIRC	TCGA-BP-5198-01A	RNF213	chr17	78286967	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000507668	ENST00000338008		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000507668	ENST00000510158		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000507668	ENST00000505560		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-intron	ENST00000507668	ENST00000512442		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000512972	ENST00000338008		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000512972	ENST00000510158		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000512972	ENST00000505560		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-intron	ENST00000512972	ENST00000512442		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000509193	ENST00000338008		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000509193	ENST00000510158		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000509193	ENST00000505560		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-intron	ENST00000509193	ENST00000512442		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000512721	ENST00000338008		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000512721	ENST00000510158		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-5UTR	ENST00000512721	ENST00000505560		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-intron	ENST00000512721	ENST00000512442		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5UTR-5UTR	ENST00000513907	ENST00000338008		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5UTR-5UTR	ENST00000513907	ENST00000510158		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5UTR-5UTR	ENST00000513907	ENST00000505560		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5UTR-intron	ENST00000513907	ENST00000512442		TCGA	LD	KIRC	TCGA-BP-5202-01A	SERINC5	chr5	79498705	-	ZFYVE16	chr5	79729928	+
5CDS-intron	ENST00000471714	ENST00000440491		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000471714	ENST00000338347		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000471714	ENST00000468645		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000471714	ENST00000281815		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000284322	ENST00000440491		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000284322	ENST00000338347		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000284322	ENST00000468645		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000284322	ENST00000281815		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000495063	ENST00000440491		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000495063	ENST00000338347		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000495063	ENST00000468645		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000495063	ENST00000281815		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000383691	ENST00000440491		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000383691	ENST00000338347		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000383691	ENST00000468645		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
5CDS-intron	ENST00000383691	ENST00000281815		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000532144	ENST00000440491		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000532144	ENST00000338347		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000532144	ENST00000468645		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
intron-intron	ENST00000532144	ENST00000281815		TCGA	LD	KIRC	TCGA-CJ-4640-01A	ABI3BP	chr3	100493449	-	NBPF9	chr1	148252118	-
Frame-shit	ENST00000225296	ENST00000262467		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000345221		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000269280		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000572272		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000354411		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000577119		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000225296	ENST00000571307		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-3CDS	ENST00000433302	ENST00000262467		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000345221		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000269280		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000572272		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000354411		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000577119		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
intron-intron	ENST00000433302	ENST00000571307		TCGA	LD	KIRC	TCGA-CJ-4640-01A	DHX33	chr17	5364259	-	NLRP1	chr17	5405192	-
In-frame	ENST00000370321	ENST00000343253		TCGA	LD	KIRC	TCGA-CJ-4868-01A	RPL5	chr1	93303190	+	CCDC18	chr1	93687166	+
In-frame	ENST00000370321	ENST00000401026		TCGA	LD	KIRC	TCGA-CJ-4868-01A	RPL5	chr1	93303190	+	CCDC18	chr1	93687166	+
In-frame	ENST00000370321	ENST00000338949		TCGA	LD	KIRC	TCGA-CJ-4868-01A	RPL5	chr1	93303190	+	CCDC18	chr1	93687166	+
5CDS-5UTR	ENST00000370321	ENST00000334652		TCGA	LD	KIRC	TCGA-CJ-4868-01A	RPL5	chr1	93303190	+	CCDC18	chr1	93687166	+
5CDS-5UTR	ENST00000370321	ENST00000557479		TCGA	LD	KIRC	TCGA-CJ-4868-01A	RPL5	chr1	93303190	+	CCDC18	chr1	93687166	+
5CDS-intron	ENST00000370321	ENST00000421014		TCGA	LD	KIRC	TCGA-CJ-4868-01A	RPL5	chr1	93303190	+	CCDC18	chr1	93687166	+
intron-3CDS	ENST00000487931	ENST00000457030		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-3CDS	ENST00000487931	ENST00000330010		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-intron	ENST00000487931	ENST00000294624		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-intron	ENST00000487931	ENST00000334785		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-3UTR	ENST00000487931	ENST00000480732		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-3CDS	ENST00000370763	ENST00000457030		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-3CDS	ENST00000370763	ENST00000330010		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-intron	ENST00000370763	ENST00000294624		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-intron	ENST00000370763	ENST00000334785		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
intron-3UTR	ENST00000370763	ENST00000480732		TCGA	LD	KIRC	TCGA-CJ-4869-01A	DNAJB4	chr1	78445303	+	NEXN	chr1	78407708	+
5CDS-intron	ENST00000398675	ENST00000327791		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000442791		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000534854		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000380790		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000380788		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000541702		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
5CDS-intron	ENST00000398675	ENST00000555248		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000327791		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000442791		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000534854		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000380790		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000380788		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000541702		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
intron-intron	ENST00000280876	ENST00000555248		TCGA	LD	KIRC	TCGA-CJ-4869-01A	GXYLT1	chr12	42523561	-	YAF2	chr12	42555567	-
Frame-shit	ENST00000369278	ENST00000546500		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
Frame-shit	ENST00000369278	ENST00000340913		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
Frame-shit	ENST00000369278	ENST00000330752		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
Frame-shit	ENST00000369278	ENST00000547276		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
5CDS-intron	ENST00000369278	ENST00000551803		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
3UTR-3CDS	ENST00000461673	ENST00000546500		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
3UTR-3CDS	ENST00000461673	ENST00000340913		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
3UTR-3CDS	ENST00000461673	ENST00000330752		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
3UTR-3CDS	ENST00000461673	ENST00000547276		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
3UTR-intron	ENST00000461673	ENST00000551803		TCGA	LD	KIRC	TCGA-CJ-4878-01A	UFL1	chr6	96969826	+	HNRNPA1	chr12	54675579	+
In-frame	ENST00000304058	ENST00000295951		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000304058	ENST00000416870		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000304058	ENST00000295952		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000304058	ENST00000383718		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000304058	ENST00000428312		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000304058	ENST00000449503		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000304058	ENST00000472546		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000304058	ENST00000442599		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000304058	ENST00000495364		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000304058	ENST00000494088		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
In-frame	ENST00000510708	ENST00000295951		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000510708	ENST00000416870		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000510708	ENST00000295952		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000510708	ENST00000383718		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000510708	ENST00000428312		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-5UTR	ENST00000510708	ENST00000449503		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000510708	ENST00000472546		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000510708	ENST00000442599		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000510708	ENST00000495364		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
5CDS-intron	ENST00000510708	ENST00000494088		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-3CDS	ENST00000515439	ENST00000295951		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-5UTR	ENST00000515439	ENST00000416870		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-5UTR	ENST00000515439	ENST00000295952		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-5UTR	ENST00000515439	ENST00000383718		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-5UTR	ENST00000515439	ENST00000428312		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-5UTR	ENST00000515439	ENST00000449503		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-intron	ENST00000515439	ENST00000472546		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-intron	ENST00000515439	ENST00000442599		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-intron	ENST00000515439	ENST00000495364		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
intron-intron	ENST00000515439	ENST00000494088		TCGA	LD	KIRC	TCGA-CJ-4884-01A	DTWD2	chr5	118264232	-	SLMAP	chr3	57817110	+
In-frame	ENST00000081029	ENST00000416383		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
In-frame	ENST00000081029	ENST00000298876		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
In-frame	ENST00000081029	ENST00000535986		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
5CDS-intron	ENST00000081029	ENST00000538647		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
In-frame	ENST00000538315	ENST00000416383		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
In-frame	ENST00000538315	ENST00000298876		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
In-frame	ENST00000538315	ENST00000535986		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
5CDS-intron	ENST00000538315	ENST00000538647		TCGA	LD	KIRC	TCGA-CJ-4893-01A	MRPS35	chr12	27877119	+	SMCO2	chr12	27627719	+
5UTR-3CDS	ENST00000248244	ENST00000262291		TCGA	LD	KIRC	TCGA-CJ-4901-01A	TICAM1	chr19	4831626	-	VMP1	chr17	57889031	+
5UTR-3CDS	ENST00000248244	ENST00000537567		TCGA	LD	KIRC	TCGA-CJ-4901-01A	TICAM1	chr19	4831626	-	VMP1	chr17	57889031	+
5UTR-3CDS	ENST00000248244	ENST00000539763		TCGA	LD	KIRC	TCGA-CJ-4901-01A	TICAM1	chr19	4831626	-	VMP1	chr17	57889031	+
5UTR-3CDS	ENST00000248244	ENST00000536180		TCGA	LD	KIRC	TCGA-CJ-4901-01A	TICAM1	chr19	4831626	-	VMP1	chr17	57889031	+
5UTR-3CDS	ENST00000248244	ENST00000545362		TCGA	LD	KIRC	TCGA-CJ-4901-01A	TICAM1	chr19	4831626	-	VMP1	chr17	57889031	+
5UTR-intron	ENST00000248244	ENST00000588617		TCGA	LD	KIRC	TCGA-CJ-4901-01A	TICAM1	chr19	4831626	-	VMP1	chr17	57889031	+
intron-3CDS	ENST00000460833	ENST00000003084		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
intron-3CDS	ENST00000460833	ENST00000454343		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
intron-intron	ENST00000460833	ENST00000608965		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
3UTR-3CDS	ENST00000474768	ENST00000003084		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
3UTR-3CDS	ENST00000474768	ENST00000454343		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
3UTR-intron	ENST00000474768	ENST00000608965		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
3UTR-3CDS	ENST00000481312	ENST00000003084		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
3UTR-3CDS	ENST00000481312	ENST00000454343		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
3UTR-intron	ENST00000481312	ENST00000608965		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
intron-3CDS	ENST00000485174	ENST00000003084		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
intron-3CDS	ENST00000485174	ENST00000454343		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
intron-intron	ENST00000485174	ENST00000608965		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ADAMTS9-AS2	chr3	64852932	+	CFTR	chr7	117170953	+
5CDS-intron	ENST00000393446	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393446	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393446	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393446	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393446	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000265437	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000265437	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000265437	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000265437	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000265437	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393451	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393451	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393451	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393451	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393451	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393449	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393449	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393449	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393449	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000393449	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000323984	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000323984	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000323984	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000323984	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
5CDS-intron	ENST00000323984	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000432298	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000432298	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000432298	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000432298	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000432298	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000422922	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000422922	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000422922	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000422922	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000422922	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000487459	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000487459	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000487459	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000487459	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000487459	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393443	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393443	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393443	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393443	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393443	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393447	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393447	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393447	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393447	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393447	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393444	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393444	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393444	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393444	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000393444	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000465133	ENST00000477532		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000465133	ENST00000357099		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000465133	ENST00000265224		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000465133	ENST00000417525		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
intron-intron	ENST00000465133	ENST00000433239		TCGA	LD	KIRC	TCGA-CJ-4905-01A	ST7	chr7	116593745	+	ANKRD7	chr7	118067031	+
In-frame	ENST00000295951	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000295951	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000295951	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000295951	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-3CDS	ENST00000416870	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-3CDS	ENST00000416870	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-5UTR	ENST00000416870	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-intron	ENST00000416870	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000295952	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000295952	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000295952	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000295952	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-3CDS	ENST00000383718	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-3CDS	ENST00000383718	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-5UTR	ENST00000383718	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-intron	ENST00000383718	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000428312	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000428312	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000428312	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000428312	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000449503	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000449503	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000449503	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000449503	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-3CDS	ENST00000472546	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-3CDS	ENST00000472546	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-5UTR	ENST00000472546	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
intron-intron	ENST00000472546	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000442599	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000442599	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000442599	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000442599	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000495364	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000495364	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000495364	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000495364	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000494088	ENST00000303436		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000494088	ENST00000496292		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-5UTR	ENST00000494088	ENST00000489843		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
5CDS-intron	ENST00000494088	ENST00000493378		TCGA	LD	KIRC	TCGA-CJ-4907-01A	SLMAP	chr3	57908750	+	ARF4	chr3	57563114	-
In-frame	ENST00000379370	ENST00000379389		TCGA	LD	KIRC	TCGA-CJ-4920-01A	AGRN	chr1	957842	+	ISG15	chr1	949364	+
intron-3CDS	ENST00000477585	ENST00000379389		TCGA	LD	KIRC	TCGA-CJ-4920-01A	AGRN	chr1	957842	+	ISG15	chr1	949364	+
In-frame	ENST00000225893	ENST00000299381		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000225893	ENST00000470481		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
In-frame	ENST00000561193	ENST00000299381		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000561193	ENST00000470481		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
In-frame	ENST00000560016	ENST00000299381		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000560016	ENST00000470481		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
In-frame	ENST00000427275	ENST00000299381		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000427275	ENST00000470481		TCGA	LD	KIRC	TCGA-CJ-4920-01A	HNF1B	chr17	36091586	-	ANAPC16	chr10	73990124	+
5CDS-intron	ENST00000317147	ENST00000566044		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000317147	ENST00000455779		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000317147	ENST00000299167		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000317147	ENST00000323584		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000317147	ENST00000567402		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000569240	ENST00000566044		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000569240	ENST00000455779		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000569240	ENST00000299167		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000569240	ENST00000323584		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000569240	ENST00000567402		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000441024	ENST00000566044		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000441024	ENST00000455779		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000441024	ENST00000299167		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000441024	ENST00000323584		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5CDS-intron	ENST00000441024	ENST00000567402		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
intron-intron	ENST00000569732	ENST00000566044		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
intron-intron	ENST00000569732	ENST00000455779		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
intron-intron	ENST00000569732	ENST00000299167		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
intron-intron	ENST00000569732	ENST00000323584		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
intron-intron	ENST00000569732	ENST00000567402		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5UTR-intron	ENST00000245138	ENST00000566044		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5UTR-intron	ENST00000245138	ENST00000455779		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5UTR-intron	ENST00000245138	ENST00000299167		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5UTR-intron	ENST00000245138	ENST00000323584		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
5UTR-intron	ENST00000245138	ENST00000567402		TCGA	LD	KIRC	TCGA-CJ-4923-01A	CNOT1	chr16	58585493	-	PHKB	chr16	47596309	+
In-frame	ENST00000462705	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000462705	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000462705	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
Frame-shit	ENST00000393785	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000393785	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000393785	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
In-frame	ENST00000481632	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000481632	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000481632	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
Frame-shit	ENST00000471418	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000471418	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000471418	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
In-frame	ENST00000357258	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000357258	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000357258	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
Frame-shit	ENST00000464560	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000464560	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000464560	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
intron-3CDS	ENST00000488663	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
intron-intron	ENST00000488663	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
intron-intron	ENST00000488663	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
Frame-shit	ENST00000474710	ENST00000421999		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000474710	ENST00000496116		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000474710	ENST00000489081		TCGA	LD	KIRC	TCGA-CJ-5671-01A	ZBTB20	chr3	114069121	-	CMSS1	chr3	99865817	+
intron-3CDS	ENST00000250457	ENST00000555449		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000250457	ENST00000331299		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000250457	ENST00000557611		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000553215	ENST00000555449		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000553215	ENST00000331299		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000553215	ENST00000557611		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000547327	ENST00000555449		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000547327	ENST00000331299		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000547327	ENST00000557611		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000557521	ENST00000555449		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000557521	ENST00000331299		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000557521	ENST00000557611		TCGA	LD	KIRC	TCGA-CJ-5678-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000286800	ENST00000371130		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-3CDS	ENST00000286800	ENST00000422452		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-intron	ENST00000286800	ENST00000461429		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-3CDS	ENST00000399921	ENST00000371130		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-3CDS	ENST00000399921	ENST00000422452		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-intron	ENST00000399921	ENST00000461429		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-3CDS	ENST00000462262	ENST00000371130		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-3CDS	ENST00000462262	ENST00000422452		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
intron-intron	ENST00000462262	ENST00000461429		TCGA	LD	KIRC	TCGA-CJ-5681-01A	BACH1	chr21	30566581	+	TENM1	chrX	123775841	-
5CDS-5UTR	ENST00000284878	ENST00000369484		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000284878	ENST00000369479		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000400166	ENST00000369484		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000400166	ENST00000369479		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000356275	ENST00000369484		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000356275	ENST00000369479		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000400165	ENST00000369484		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000400165	ENST00000369479		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000306618	ENST00000369484		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000306618	ENST00000369479		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000400169	ENST00000369484		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000400169	ENST00000369479		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	CMC4	chrX	154292308	-
5CDS-intron	ENST00000284878	ENST00000369476		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000284878	ENST00000482244		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000284878	ENST00000362018		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400166	ENST00000369476		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400166	ENST00000482244		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400166	ENST00000362018		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000356275	ENST00000369476		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000356275	ENST00000482244		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000356275	ENST00000362018		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400165	ENST00000369476		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400165	ENST00000482244		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400165	ENST00000362018		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000306618	ENST00000369476		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000306618	ENST00000482244		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000306618	ENST00000362018		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400169	ENST00000369476		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400169	ENST00000482244		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000400169	ENST00000362018		TCGA	LD	KIRC	TCGA-CJ-5681-01A	CXADR	chr21	18885490	+	MTCP1	chrX	154292308	-
intron-3CDS	ENST00000371993	ENST00000370357		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574132	-	PASD1	chrX	150828185	+
In-frame	ENST00000356915	ENST00000370357		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574132	-	PASD1	chrX	150828185	+
intron-3CDS	ENST00000338081	ENST00000370357		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574132	-	PASD1	chrX	150828185	+
Frame-shit	ENST00000356220	ENST00000370357		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574132	-	PASD1	chrX	150828185	+
intron-3CDS	ENST00000488120	ENST00000370357		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574132	-	PASD1	chrX	150828185	+
intron-3CDS	ENST00000496551	ENST00000370357		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DCX	chrX	110574132	-	PASD1	chrX	150828185	+
3UTR-3CDS	ENST00000442434	ENST00000245838		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DIP2A-IT1	chr21	47883141	+	THOC2	chrX	122802165	-
3UTR-3CDS	ENST00000442434	ENST00000355725		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DIP2A-IT1	chr21	47883141	+	THOC2	chrX	122802165	-
3UTR-3CDS	ENST00000442434	ENST00000491737		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DIP2A-IT1	chr21	47883141	+	THOC2	chrX	122802165	-
3UTR-intron	ENST00000442434	ENST00000497887		TCGA	LD	KIRC	TCGA-CJ-5681-01A	DIP2A-IT1	chr21	47883141	+	THOC2	chrX	122802165	-
5CDS-intron	ENST00000370314	ENST00000355827		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000370314	ENST00000373054		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000370314	ENST00000373061		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000370314	ENST00000373049		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000370314	ENST00000324765		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000535043	ENST00000355827		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000535043	ENST00000373054		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000535043	ENST00000373061		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000535043	ENST00000373049		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
5CDS-intron	ENST00000535043	ENST00000324765		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
intron-intron	ENST00000497894	ENST00000355827		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
intron-intron	ENST00000497894	ENST00000373054		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
intron-intron	ENST00000497894	ENST00000373061		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
intron-intron	ENST00000497894	ENST00000373049		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
intron-intron	ENST00000497894	ENST00000324765		TCGA	LD	KIRC	TCGA-CJ-5681-01A	GABRA3	chrX	151376473	-	DIAPH2	chrX	96603080	+
intron-3CDS	ENST00000370910	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-3CDS	ENST00000361420	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-3CDS	ENST00000370903	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-3CDS	ENST00000370904	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-3CDS	ENST00000467244	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-3CDS	ENST00000370900	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-3CDS	ENST00000370901	ENST00000400454		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	DSCAM	chr21	41561165	-
intron-5UTR	ENST00000370910	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370910	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000361420	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000361420	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370903	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370903	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370904	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370904	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000467244	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000467244	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370900	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370900	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370901	ENST00000476971		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000370901	ENST00000359237		TCGA	LD	KIRC	TCGA-CJ-5681-01A	IGSF1	chrX	130712642	-	PLAC1	chrX	133736152	-
In-frame	ENST00000398148	ENST00000315869		TCGA	LD	KIRC	TCGA-CJ-5681-01A	KHSRP	chr19	6415150	-	TFE3	chrX	48895857	-
5CDS-5UTR	ENST00000398148	ENST00000487451		TCGA	LD	KIRC	TCGA-CJ-5681-01A	KHSRP	chr19	6415150	-	TFE3	chrX	48895857	-
5UTR-3CDS	ENST00000545939	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3UTR	ENST00000545939	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3UTR	ENST00000545939	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-intron	ENST00000545939	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
Frame-shit	ENST00000286791	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-3UTR	ENST00000286791	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-3UTR	ENST00000286791	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-intron	ENST00000286791	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3CDS	ENST00000399934	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3UTR	ENST00000399934	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3UTR	ENST00000399934	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-intron	ENST00000399934	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
Frame-shit	ENST00000341618	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-3UTR	ENST00000341618	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-3UTR	ENST00000341618	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-intron	ENST00000341618	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3CDS	ENST00000399935	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3UTR	ENST00000399935	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-3UTR	ENST00000399935	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5UTR-intron	ENST00000399935	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
Frame-shit	ENST00000399947	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-3UTR	ENST00000399947	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-3UTR	ENST00000399947	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
5CDS-intron	ENST00000399947	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3CDS	ENST00000339024	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000339024	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000339024	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-intron	ENST00000339024	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3CDS	ENST00000399928	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000399928	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000399928	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-intron	ENST00000399928	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3CDS	ENST00000399926	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000399926	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000399926	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-intron	ENST00000399926	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3CDS	ENST00000399925	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000399925	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-3UTR	ENST00000399925	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
intron-intron	ENST00000399925	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
3UTR-3CDS	ENST00000496779	ENST00000286448		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
3UTR-3UTR	ENST00000496779	ENST00000479687		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
3UTR-3UTR	ENST00000496779	ENST00000262640		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
3UTR-intron	ENST00000496779	ENST00000460621		TCGA	LD	KIRC	TCGA-CJ-5681-01A	MAP3K7CL	chr21	30458238	+	VAMP7	chrY	59228292	+
3UTR-3UTR	ENST00000372072	ENST00000460259		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372072	ENST00000354250		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372072	ENST00000340344		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372073	ENST00000460259		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372073	ENST00000354250		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372073	ENST00000340344		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372068	ENST00000460259		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372068	ENST00000354250		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000372068	ENST00000340344		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000288381	ENST00000460259		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000288381	ENST00000354250		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000288381	ENST00000340344		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000464177	ENST00000460259		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000464177	ENST00000354250		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
3UTR-3UTR	ENST00000464177	ENST00000340344		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TMEM164	chrX	109416681	+	NDUFV3	chr21	44328974	+
Frame-shit	ENST00000291574	ENST00000340433		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TRAPPC10	chr21	45504144	+	ZCCHC16	chrX	111697728	+
intron-3CDS	ENST00000380221	ENST00000340433		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TRAPPC10	chr21	45504144	+	ZCCHC16	chrX	111697728	+
intron-3CDS	ENST00000483973	ENST00000340433		TCGA	LD	KIRC	TCGA-CJ-5681-01A	TRAPPC10	chr21	45504144	+	ZCCHC16	chrX	111697728	+
5UTR-3CDS	ENST00000398505	ENST00000291582		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000398505	ENST00000329347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000398505	ENST00000355347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3CDS	ENST00000310826	ENST00000291582		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000310826	ENST00000329347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000310826	ENST00000355347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3CDS	ENST00000398499	ENST00000291582		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000398499	ENST00000329347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000398499	ENST00000355347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3CDS	ENST00000398511	ENST00000291582		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000398511	ENST00000329347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000398511	ENST00000355347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3CDS	ENST00000465968	ENST00000291582		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000465968	ENST00000329347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3UTR	ENST00000465968	ENST00000355347		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	AIRE	chr21	45716266	+
5UTR-3CDS	ENST00000398505	ENST00000349048		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000398505	ENST00000403390		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000398505	ENST00000496824		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000310826	ENST00000349048		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000310826	ENST00000403390		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000310826	ENST00000496824		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000398499	ENST00000349048		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000398499	ENST00000403390		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000398499	ENST00000496824		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000398511	ENST00000349048		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000398511	ENST00000403390		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000398511	ENST00000496824		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000465968	ENST00000349048		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000465968	ENST00000403390		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000465968	ENST00000496824		TCGA	LD	KIRC	TCGA-CJ-5681-01A	ZBTB21	chr21	43430361	-	PFKL	chr21	45726564	+
In-frame	ENST00000262061	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
5UTR-3CDS	ENST00000549043	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
In-frame	ENST00000552218	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
In-frame	ENST00000553231	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
In-frame	ENST00000552362	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
In-frame	ENST00000455864	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
5UTR-3CDS	ENST00000416254	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
In-frame	ENST00000549116	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
In-frame	ENST00000551779	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
intron-3CDS	ENST00000548281	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
intron-3CDS	ENST00000548753	ENST00000491143		TCGA	LD	KIRC	TCGA-CW-5581-01A	COPZ1	chr12	54718965	+	ONECUT2	chr18	55143669	+
intron-3CDS	ENST00000250457	ENST00000555449		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000250457	ENST00000331299		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000250457	ENST00000557611		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000553215	ENST00000555449		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000553215	ENST00000331299		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000553215	ENST00000557611		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000547327	ENST00000555449		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000547327	ENST00000331299		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000547327	ENST00000557611		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000557521	ENST00000555449		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000557521	ENST00000331299		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000557521	ENST00000557611		TCGA	LD	KIRC	TCGA-CW-5581-01A	EGLN3	chr14	34487807	-	SLC25A21	chr14	37344209	-
5CDS-intron	ENST00000327367	ENST00000316549		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
5CDS-intron	ENST00000327367	ENST00000498717		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000559092	ENST00000316549		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000559092	ENST00000498717		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000540846	ENST00000316549		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000540846	ENST00000498717		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000439724	ENST00000316549		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000439724	ENST00000498717		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000537194	ENST00000316549		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-intron	ENST00000537194	ENST00000498717		TCGA	LD	KIRC	TCGA-CW-5581-01A	SMAD3	chr15	67358698	+	SLC9A9	chr3	142987831	-
intron-3CDS	ENST00000373913	ENST00000557021		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373913	ENST00000371650		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373913	ENST00000371652		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373913	ENST00000371656		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000401952	ENST00000557021		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000401952	ENST00000371650		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000401952	ENST00000371652		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000401952	ENST00000371656		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373907	ENST00000557021		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373907	ENST00000371650		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373907	ENST00000371652		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000373907	ENST00000371656		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000339266	ENST00000557021		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000339266	ENST00000371650		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000339266	ENST00000371652		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000339266	ENST00000371656		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000475894	ENST00000557021		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000475894	ENST00000371650		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000475894	ENST00000371652		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
intron-3CDS	ENST00000475894	ENST00000371656		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
In-frame	ENST00000340491	ENST00000557021		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
In-frame	ENST00000340491	ENST00000371650		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
In-frame	ENST00000340491	ENST00000371652		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
In-frame	ENST00000340491	ENST00000371656		TCGA	LD	KIRC	TCGA-CW-6087-01A	DLGAP4	chr20	35091002	+	TMEM189	chr20	48747484	-
5UTR-intron	ENST00000318789	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
5UTR-intron	ENST00000475937	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
5UTR-intron	ENST00000493089	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
5UTR-intron	ENST00000484350	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
5UTR-intron	ENST00000318779	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
intron-intron	ENST00000491238	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
intron-intron	ENST00000498215	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
intron-intron	ENST00000468577	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
intron-intron	ENST00000472382	ENST00000455623		TCGA	LD	KIRC	TCGA-CW-6090-01A	FOXP1	chr3	71348971	-	GRM7-AS3	chr3	6676884	-
In-frame	ENST00000368315	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000368315	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000368315	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000368315	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000368315	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000313695	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000313695	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000313695	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000313695	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000313695	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000361247	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000361247	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000361247	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000361247	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000361247	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
Frame-shit	ENST00000368316	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
Frame-shit	ENST00000368316	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
Frame-shit	ENST00000368316	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000368316	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000368316	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
Frame-shit	ENST00000462460	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
Frame-shit	ENST00000462460	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
Frame-shit	ENST00000462460	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000462460	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000462460	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
intron-3CDS	ENST00000477754	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
intron-3CDS	ENST00000477754	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
intron-3CDS	ENST00000477754	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
intron-intron	ENST00000477754	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
intron-intron	ENST00000477754	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000313667	ENST00000324350		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000313667	ENST00000373191		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000313667	ENST00000397828		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000313667	ENST00000246314		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
5CDS-intron	ENST00000313667	ENST00000471099		TCGA	LD	KIRC	TCGA-CW-6097-01A	ARHGEF2	chr1	155927504	-	AGO3	chr1	36432556	+
In-frame	ENST00000339566	ENST00000383168		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000339566	ENST00000581374		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000339566	ENST00000440832		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-intron	ENST00000339566	ENST00000583022		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
In-frame	ENST00000409707	ENST00000383168		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000409707	ENST00000581374		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000409707	ENST00000440832		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-intron	ENST00000409707	ENST00000583022		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
In-frame	ENST00000394073	ENST00000383168		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000394073	ENST00000581374		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000394073	ENST00000440832		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-intron	ENST00000394073	ENST00000583022		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
In-frame	ENST00000394070	ENST00000383168		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000394070	ENST00000581374		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000394070	ENST00000440832		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-intron	ENST00000394070	ENST00000583022		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
In-frame	ENST00000536064	ENST00000383168		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000536064	ENST00000581374		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-5UTR	ENST00000536064	ENST00000440832		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
5CDS-intron	ENST00000536064	ENST00000583022		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000486458	ENST00000383168		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000486458	ENST00000581374		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000486458	ENST00000440832		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
intron-intron	ENST00000486458	ENST00000583022		TCGA	LD	KIRC	TCGA-CZ-4854-01A	STAMBP	chr2	74058186	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000393446	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393446	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393446	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393446	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000393446	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393446	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000265437	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000265437	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000265437	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000265437	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000265437	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000265437	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393451	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393451	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393451	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393451	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000393451	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393451	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393449	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393449	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393449	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393449	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000393449	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393449	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000323984	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000323984	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000323984	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000323984	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000323984	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000323984	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
In-frame	ENST00000432298	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
In-frame	ENST00000432298	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-intron	ENST00000432298	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-intron	ENST00000432298	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-3UTR	ENST00000432298	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-intron	ENST00000432298	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
In-frame	ENST00000422922	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
In-frame	ENST00000422922	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-intron	ENST00000422922	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-intron	ENST00000422922	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-3UTR	ENST00000422922	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-intron	ENST00000422922	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000487459	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000487459	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000487459	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000487459	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000487459	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000487459	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393443	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393443	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393443	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393443	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000393443	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393443	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393447	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393447	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393447	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393447	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000393447	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393447	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393444	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000393444	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393444	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393444	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000393444	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000393444	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000465133	ENST00000253861		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3CDS	ENST00000465133	ENST00000539845		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000465133	ENST00000393161		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000465133	ENST00000545148		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-3UTR	ENST00000465133	ENST00000460346		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
intron-intron	ENST00000465133	ENST00000541309		TCGA	LD	KIRC	TCGA-CZ-4860-01A	ST7	chr7	116655068	+	EXOC4	chr7	133314798	+
5CDS-5UTR	ENST00000379638	ENST00000338458		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000379638	ENST00000496106		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000379638	ENST00000498517		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000379638	ENST00000296315		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000379638	ENST00000413728		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000379638	ENST00000497267		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000379638	ENST00000495373		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-5UTR	ENST00000513339	ENST00000338458		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000513339	ENST00000496106		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000513339	ENST00000498517		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000513339	ENST00000296315		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000513339	ENST00000413728		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000513339	ENST00000497267		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000513339	ENST00000495373		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-5UTR	ENST00000545426	ENST00000338458		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000545426	ENST00000496106		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000545426	ENST00000498517		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000545426	ENST00000296315		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000545426	ENST00000413728		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000545426	ENST00000497267		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000545426	ENST00000495373		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-5UTR	ENST00000474542	ENST00000338458		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-intron	ENST00000474542	ENST00000496106		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-intron	ENST00000474542	ENST00000498517		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-intron	ENST00000474542	ENST00000296315		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-intron	ENST00000474542	ENST00000413728		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-intron	ENST00000474542	ENST00000497267		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5UTR-intron	ENST00000474542	ENST00000495373		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-5UTR	ENST00000504247	ENST00000338458		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000504247	ENST00000496106		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000504247	ENST00000498517		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000504247	ENST00000296315		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000504247	ENST00000413728		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000504247	ENST00000497267		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
5CDS-intron	ENST00000504247	ENST00000495373		TCGA	LD	KIRC	TCGA-CZ-5456-01A	REEP5	chr5	112256860	-	ARHGEF3	chr3	57069204	-
Frame-shit	ENST00000359337	ENST00000554503		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-5UTR	ENST00000359337	ENST00000393825		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-intron	ENST00000359337	ENST00000556732		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-intron	ENST00000359337	ENST00000557276		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
In-frame	ENST00000449103	ENST00000554503		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-5UTR	ENST00000449103	ENST00000393825		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-intron	ENST00000449103	ENST00000556732		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-intron	ENST00000449103	ENST00000557276		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5UTR-3CDS	ENST00000496720	ENST00000554503		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5UTR-5UTR	ENST00000496720	ENST00000393825		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5UTR-intron	ENST00000496720	ENST00000556732		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5UTR-intron	ENST00000496720	ENST00000557276		TCGA	LD	KIRC	TCGA-CZ-5460-01A	PLXNB2	chr22	50724229	-	NDUFA4L2	chr12	57631118	-
5CDS-intron	ENST00000374807	ENST00000609205		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000374807	ENST00000360270		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000374811	ENST00000609205		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000374811	ENST00000360270		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000374804	ENST00000609205		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000374804	ENST00000360270		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000312391	ENST00000609205		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000312391	ENST00000360270		TCGA	LD	KIRC	TCGA-CZ-5468-01A	LAS1L	chrX	64751237	-	MSN	chrX	64820542	+
5CDS-intron	ENST00000413379	ENST00000591997		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000413379	ENST00000251289		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000413379	ENST00000587001		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000540850	ENST00000591997		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000540850	ENST00000251289		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000540850	ENST00000587001		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
intron-intron	ENST00000598840	ENST00000591997		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
intron-intron	ENST00000598840	ENST00000251289		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
intron-intron	ENST00000598840	ENST00000587001		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000270225	ENST00000591997		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000270225	ENST00000251289		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000270225	ENST00000587001		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000392776	ENST00000591997		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000392776	ENST00000251289		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000392776	ENST00000587001		TCGA	LD	KIRC	TCGA-CZ-5468-01A	SAE1	chr19	47658470	+	WDR18	chr19	994019	+
Frame-shit	ENST00000395002	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
Frame-shit	ENST00000395002	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000395002	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5CDS-intron	ENST00000395002	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
Frame-shit	ENST00000264344	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
Frame-shit	ENST00000264344	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000264344	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5CDS-intron	ENST00000264344	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000503556	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000503556	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-5UTR	ENST00000503556	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-intron	ENST00000503556	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000511976	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000511976	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-5UTR	ENST00000511976	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-intron	ENST00000511976	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
Frame-shit	ENST00000508369	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
Frame-shit	ENST00000508369	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000508369	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5CDS-intron	ENST00000508369	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000513837	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000513837	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-5UTR	ENST00000513837	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-intron	ENST00000513837	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5UTR-3CDS	ENST00000502459	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5UTR-3CDS	ENST00000502459	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5UTR-5UTR	ENST00000502459	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
5UTR-intron	ENST00000502459	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000509094	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000509094	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-5UTR	ENST00000509094	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-intron	ENST00000509094	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000515600	ENST00000262995		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-3CDS	ENST00000515600	ENST00000262994		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-5UTR	ENST00000515600	ENST00000505913		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
intron-intron	ENST00000515600	ENST00000515388		TCGA	LD	KIRC	TCGA-CZ-5469-01A	FAM13A	chr4	89726162	-	GAB1	chr4	144336630	+
Frame-shit	ENST00000318562	ENST00000379834		TCGA	LD	KIRC	TCGA-DV-5567-01A	EPS8L2	chr11	709608	+	RIOK1	chr6	7413122	+
Frame-shit	ENST00000533256	ENST00000379834		TCGA	LD	KIRC	TCGA-DV-5567-01A	EPS8L2	chr11	709608	+	RIOK1	chr6	7413122	+
Frame-shit	ENST00000530636	ENST00000379834		TCGA	LD	KIRC	TCGA-DV-5567-01A	EPS8L2	chr11	709608	+	RIOK1	chr6	7413122	+
Frame-shit	ENST00000526198	ENST00000379834		TCGA	LD	KIRC	TCGA-DV-5567-01A	EPS8L2	chr11	709608	+	RIOK1	chr6	7413122	+
intron-3CDS	ENST00000534449	ENST00000379834		TCGA	LD	KIRC	TCGA-DV-5567-01A	EPS8L2	chr11	709608	+	RIOK1	chr6	7413122	+
Frame-shit	ENST00000256474	ENST00000287652		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
Frame-shit	ENST00000256474	ENST00000448281		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
5CDS-intron	ENST00000256474	ENST00000496355		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
intron-3CDS	ENST00000345392	ENST00000287652		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
intron-3CDS	ENST00000345392	ENST00000448281		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
intron-intron	ENST00000345392	ENST00000496355		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
3UTR-3CDS	ENST00000477538	ENST00000287652		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
3UTR-3CDS	ENST00000477538	ENST00000448281		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
3UTR-intron	ENST00000477538	ENST00000496355		TCGA	LD	KIRC	TCGA-DV-5575-01A	VHL	chr3	10188320	+	TATDN2	chr3	10311815	+
Frame-shit	ENST00000398540	ENST00000420581		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000398540	ENST00000489031		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
In-frame	ENST00000398540	ENST00000475434		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000542259	ENST00000420581		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
In-frame	ENST00000542259	ENST00000489031		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000542259	ENST00000475434		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000497757	ENST00000420581		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000497757	ENST00000489031		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000497757	ENST00000475434		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000478263	ENST00000420581		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000478263	ENST00000489031		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000478263	ENST00000475434		TCGA	LD	KIRC	TCGA-EU-5907-01A	FRMD4B	chr3	69336903	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000282272	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000282272	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-intron	ENST00000282272	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000337207	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000337207	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-intron	ENST00000337207	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000450567	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000450567	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-intron	ENST00000450567	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000328737	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000328737	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-intron	ENST00000328737	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
Frame-shit	ENST00000409153	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
Frame-shit	ENST00000409153	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
5CDS-intron	ENST00000409153	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
5UTR-3CDS	ENST00000539527	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
5UTR-3CDS	ENST00000539527	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
5UTR-intron	ENST00000539527	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
Frame-shit	ENST00000409919	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
Frame-shit	ENST00000409919	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
5CDS-intron	ENST00000409919	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000477852	ENST00000453153		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000477852	ENST00000453929		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-intron	ENST00000477852	ENST00000495505		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	ANKRD44	chr2	198175302	-	FASTKD1	chr2	170413807	-
intron-3CDS	ENST00000388890	ENST00000310581		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000388890	ENST00000296820		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000388890	ENST00000334602		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000388890	ENST00000508104		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-intron	ENST00000388890	ENST00000522877		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000310581		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000296820		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000334602		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000323510	ENST00000508104		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-intron	ENST00000323510	ENST00000522877		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000483173	ENST00000310581		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000483173	ENST00000296820		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000483173	ENST00000334602		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000483173	ENST00000508104		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-intron	ENST00000483173	ENST00000522877		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
Frame-shit	ENST00000467963	ENST00000310581		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
In-frame	ENST00000467963	ENST00000296820		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
Frame-shit	ENST00000467963	ENST00000334602		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
Frame-shit	ENST00000467963	ENST00000508104		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000467963	ENST00000522877		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000435709	ENST00000310581		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000435709	ENST00000296820		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000435709	ENST00000334602		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000435709	ENST00000508104		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-intron	ENST00000435709	ENST00000522877		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000310581		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000296820		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000334602		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000494422	ENST00000508104		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
intron-intron	ENST00000494422	ENST00000522877		TCGA	RV	KIRP	TCGA-2Z-A9J2-01A	BRD9	chr5	892721	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000317147	ENST00000570101		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-3CDS	ENST00000317147	ENST00000219320		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000317147	ENST00000564100		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000317147	ENST00000564010		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-5UTR	ENST00000317147	ENST00000566953		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000317147	ENST00000564391		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-3CDS	ENST00000569240	ENST00000570101		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-3CDS	ENST00000569240	ENST00000219320		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000569240	ENST00000564100		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000569240	ENST00000564010		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-5UTR	ENST00000569240	ENST00000566953		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000569240	ENST00000564391		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-3CDS	ENST00000441024	ENST00000570101		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-3CDS	ENST00000441024	ENST00000219320		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000441024	ENST00000564100		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000441024	ENST00000564010		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-5UTR	ENST00000441024	ENST00000566953		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5UTR-intron	ENST00000441024	ENST00000564391		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-3CDS	ENST00000569732	ENST00000570101		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-3CDS	ENST00000569732	ENST00000219320		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-intron	ENST00000569732	ENST00000564100		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-intron	ENST00000569732	ENST00000564010		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-5UTR	ENST00000569732	ENST00000566953		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-intron	ENST00000569732	ENST00000564391		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-3CDS	ENST00000245138	ENST00000570101		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-3CDS	ENST00000245138	ENST00000219320		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-intron	ENST00000245138	ENST00000564100		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-intron	ENST00000245138	ENST00000564010		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-5UTR	ENST00000245138	ENST00000566953		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
intron-intron	ENST00000245138	ENST00000564391		TCGA	RV	KIRP	TCGA-5P-A9JU-01A	CNOT1	chr16	58663632	-	SLC38A7	chr16	58706147	-
5CDS-5UTR	ENST00000428084	ENST00000379028		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000428084	ENST00000413765		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000428084	ENST00000351718		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000428084	ENST00000379024		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000428084	ENST00000379022		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-intron	ENST00000428084	ENST00000425651		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-intron	ENST00000428084	ENST00000522550		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-5UTR	ENST00000494651	ENST00000379028		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-5UTR	ENST00000494651	ENST00000413765		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-5UTR	ENST00000494651	ENST00000351718		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-5UTR	ENST00000494651	ENST00000379024		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-5UTR	ENST00000494651	ENST00000379022		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-intron	ENST00000494651	ENST00000425651		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-intron	ENST00000494651	ENST00000522550		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000437633	ENST00000379028		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000437633	ENST00000413765		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000437633	ENST00000351718		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000437633	ENST00000379024		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-5UTR	ENST00000437633	ENST00000379022		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-intron	ENST00000437633	ENST00000425651		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5CDS-intron	ENST00000437633	ENST00000522550		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-5UTR	ENST00000476846	ENST00000379028		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-5UTR	ENST00000476846	ENST00000413765		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-5UTR	ENST00000476846	ENST00000351718		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-5UTR	ENST00000476846	ENST00000379024		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-5UTR	ENST00000476846	ENST00000379022		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-intron	ENST00000476846	ENST00000425651		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
5UTR-intron	ENST00000476846	ENST00000522550		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	NRCAM	chr7	107953175	-
intron-3CDS	ENST00000360319	ENST00000284727		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000360319	ENST00000409194		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000360319	ENST00000392541		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
Frame-shit	ENST00000422373	ENST00000284727		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000422373	ENST00000409194		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000422373	ENST00000392541		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-3CDS	ENST00000369850	ENST00000284727		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000369850	ENST00000409194		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000369850	ENST00000392541		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-3CDS	ENST00000369856	ENST00000284727		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000369856	ENST00000409194		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000369856	ENST00000392541		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-3CDS	ENST00000344736	ENST00000284727		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000344736	ENST00000409194		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000344736	ENST00000392541		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-3CDS	ENST00000498491	ENST00000284727		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000498491	ENST00000409194		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
intron-intron	ENST00000498491	ENST00000392541		TCGA	RV	KIRP	TCGA-G7-6793-01A	FLNA	chrX	153576900	-	ATP5G3	chr2	176049335	-
In-frame	ENST00000217407	ENST00000262865		TCGA	RV	KIRP	TCGA-B9-A8YI-01A	LBP	chr20	36983809	+	BPI	chr20	36952272	+
5CDS-intron	ENST00000217407	ENST00000489102		TCGA	RV	KIRP	TCGA-B9-A8YI-01A	LBP	chr20	36983809	+	BPI	chr20	36952272	+
5CDS-intron	ENST00000217407	ENST00000451435		TCGA	RV	KIRP	TCGA-B9-A8YI-01A	LBP	chr20	36983809	+	BPI	chr20	36952272	+
5CDS-5UTR	ENST00000409261	ENST00000243346		TCGA	RV	KIRP	TCGA-A4-7585-01A	NCKAP5	chr2	134060609	-	NMI	chr2	152139468	-
5CDS-5UTR	ENST00000409213	ENST00000243346		TCGA	RV	KIRP	TCGA-A4-7585-01A	NCKAP5	chr2	134060609	-	NMI	chr2	152139468	-
5CDS-5UTR	ENST00000405974	ENST00000243346		TCGA	RV	KIRP	TCGA-A4-7585-01A	NCKAP5	chr2	134060609	-	NMI	chr2	152139468	-
5CDS-5UTR	ENST00000317721	ENST00000243346		TCGA	RV	KIRP	TCGA-A4-7585-01A	NCKAP5	chr2	134060609	-	NMI	chr2	152139468	-
intron-5UTR	ENST00000473859	ENST00000243346		TCGA	RV	KIRP	TCGA-A4-7585-01A	NCKAP5	chr2	134060609	-	NMI	chr2	152139468	-
5UTR-intron	ENST00000406961	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000406961	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000406961	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000406961	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000406961	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000406961	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000406961	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000406961	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-intron	ENST00000469850	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-5UTR	ENST00000469850	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-5UTR	ENST00000469850	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-intron	ENST00000469850	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-intron	ENST00000469850	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-intron	ENST00000469850	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-3UTR	ENST00000469850	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
intron-5UTR	ENST00000469850	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000405141	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000405141	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000405141	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000405141	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000405141	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000405141	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000405141	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000405141	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000407230	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000407230	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000407230	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000407230	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000407230	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000407230	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000407230	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000407230	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000538539	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000538539	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000538539	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000538539	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000538539	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000538539	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000538539	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000538539	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000288599	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000288599	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000288599	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000288599	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000288599	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000288599	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000288599	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000288599	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000348332	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000348332	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000348332	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000348332	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000348332	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000348332	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000348332	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000348332	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000395856	ENST00000449576		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000395856	ENST00000396099		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000395856	ENST00000425416		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000395856	ENST00000256720		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000395856	ENST00000396097		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-intron	ENST00000395856	ENST00000404113		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3UTR	ENST00000395856	ENST00000464517		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-5UTR	ENST00000395856	ENST00000396098		TCGA	RV	KIRP	TCGA-G7-6792-01A	NCOA1	chr2	24807429	+	LPIN1	chr2	11881475	+
5UTR-3CDS	ENST00000400314	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-3CDS	ENST00000400314	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
5UTR-5UTR	ENST00000400314	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400310	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000400310	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000449640	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000449640	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400309	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000400309	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400308	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000400308	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000400304	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000400304	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000327783		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000389125		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000399913		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000399914		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000535441		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000389124		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000399907		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000399909		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000423045	ENST00000309434		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000423045	ENST00000472429		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	PCBP3	chr21	47063782	+	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000340635	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000340635	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000340635	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000340635	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000340635	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000340635	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000360047	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000360047	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000360047	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000360047	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000360047	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000360047	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000507116	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000507116	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000507116	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000507116	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000507116	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000507116	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
In-frame	ENST00000502484	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
In-frame	ENST00000502484	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
In-frame	ENST00000502484	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
In-frame	ENST00000502484	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
In-frame	ENST00000502484	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
5CDS-intron	ENST00000502484	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
Frame-shit	ENST00000546160	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
Frame-shit	ENST00000546160	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
Frame-shit	ENST00000546160	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
Frame-shit	ENST00000546160	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
Frame-shit	ENST00000546160	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
5CDS-intron	ENST00000546160	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000502575	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000502575	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000502575	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000502575	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000502575	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000502575	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000358923	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000358923	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000358923	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000358923	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000358923	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000358923	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503258	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503258	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503258	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503258	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503258	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000503258	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000405755	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000405755	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000405755	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000405755	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000405755	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000405755	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000317118	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000317118	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000317118	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000317118	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000317118	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000317118	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503947	ENST00000351578		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503947	ENST00000515010		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503947	ENST00000505428		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503947	ENST00000512982		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-3CDS	ENST00000503947	ENST00000540520		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
intron-intron	ENST00000503947	ENST00000503065		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59481384	-	FYB	chr5	39124380	-
3UTR-intron	ENST00000323146	ENST00000438045		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
3UTR-intron	ENST00000323146	ENST00000248633		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
3UTR-intron	ENST00000323146	ENST00000428214		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
3UTR-intron	ENST00000323146	ENST00000541751		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
intron-intron	ENST00000508770	ENST00000438045		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
intron-intron	ENST00000508770	ENST00000248633		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
intron-intron	ENST00000508770	ENST00000428214		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
intron-intron	ENST00000508770	ENST00000541751		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000514199	ENST00000438045		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000514199	ENST00000248633		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000514199	ENST00000428214		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000514199	ENST00000541751		TCGA	RV	KIRP	TCGA-BQ-5892-01A	SLC35A4	chr5	139948680	+	PEX1	chr7	92146729	-
In-frame	ENST00000375759	ENST00000375949		TCGA	RV	KIRP	TCGA-DZ-6131-01A	SPEN	chr1	16199631	+	CTRC	chr1	15768943	+
Frame-shit	ENST00000375759	ENST00000375943		TCGA	RV	KIRP	TCGA-DZ-6131-01A	SPEN	chr1	16199631	+	CTRC	chr1	15768943	+
5CDS-3UTR	ENST00000375759	ENST00000483406		TCGA	RV	KIRP	TCGA-DZ-6131-01A	SPEN	chr1	16199631	+	CTRC	chr1	15768943	+
intron-3CDS	ENST00000471538	ENST00000375949		TCGA	RV	KIRP	TCGA-DZ-6131-01A	SPEN	chr1	16199631	+	CTRC	chr1	15768943	+
intron-3CDS	ENST00000471538	ENST00000375943		TCGA	RV	KIRP	TCGA-DZ-6131-01A	SPEN	chr1	16199631	+	CTRC	chr1	15768943	+
intron-3UTR	ENST00000471538	ENST00000483406		TCGA	RV	KIRP	TCGA-DZ-6131-01A	SPEN	chr1	16199631	+	CTRC	chr1	15768943	+
intron-5UTR	ENST00000464611	ENST00000264335		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000464611	ENST00000571732		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000464611	ENST00000573026		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000464611	ENST00000575977		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000464611	ENST00000498643		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000331789	ENST00000264335		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000331789	ENST00000571732		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000331789	ENST00000573026		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-5UTR	ENST00000331789	ENST00000575977		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
intron-intron	ENST00000331789	ENST00000498643		TCGA	RV	KIRP	TCGA-DW-7838-01A	ACTB	chr7	5567255	-	YWHAE	chr17	1303494	-
Frame-shit	ENST00000539909	ENST00000212015		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000539909	ENST00000497639		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000539909	ENST00000432464		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000539909	ENST00000406900		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000539909	ENST00000403579		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
Frame-shit	ENST00000286621	ENST00000212015		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000286621	ENST00000497639		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000286621	ENST00000432464		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000286621	ENST00000406900		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
5CDS-intron	ENST00000286621	ENST00000403579		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-3CDS	ENST00000372734	ENST00000212015		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000372734	ENST00000497639		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000372734	ENST00000432464		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000372734	ENST00000406900		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000372734	ENST00000403579		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-3CDS	ENST00000541550	ENST00000212015		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000541550	ENST00000497639		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000541550	ENST00000432464		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000541550	ENST00000406900		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000541550	ENST00000403579		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-3CDS	ENST00000467840	ENST00000212015		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000467840	ENST00000497639		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000467840	ENST00000432464		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000467840	ENST00000406900		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
intron-intron	ENST00000467840	ENST00000403579		TCGA	RV	KIRP	TCGA-P4-AAVO-01A	ADK	chr10	75911101	+	SIRT1	chr10	69676022	+
In-frame	ENST00000295897	ENST00000243498		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000295897	ENST00000509980		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000295897	ENST00000379663		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000295897	ENST00000512454		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
In-frame	ENST00000415165	ENST00000243498		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000415165	ENST00000509980		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000415165	ENST00000379663		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000415165	ENST00000512454		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-3CDS	ENST00000503124	ENST00000243498		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-intron	ENST00000503124	ENST00000509980		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-intron	ENST00000503124	ENST00000379663		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-intron	ENST00000503124	ENST00000512454		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
In-frame	ENST00000509063	ENST00000243498		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000509063	ENST00000509980		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000509063	ENST00000379663		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000509063	ENST00000512454		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
In-frame	ENST00000401494	ENST00000243498		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000401494	ENST00000509980		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000401494	ENST00000379663		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000401494	ENST00000512454		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-3CDS	ENST00000505649	ENST00000243498		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-intron	ENST00000505649	ENST00000509980		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-intron	ENST00000505649	ENST00000379663		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-intron	ENST00000505649	ENST00000512454		TCGA	RV	KIRP	TCGA-SX-A7SS-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000297785	ENST00000264818		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000297785	ENST00000524462		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000297785	ENST00000525621		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000297785	ENST00000529370		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000297785	ENST00000529422		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000376939	ENST00000264818		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000376939	ENST00000524462		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000376939	ENST00000525621		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000376939	ENST00000529370		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000376939	ENST00000529422		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000482210	ENST00000264818		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000482210	ENST00000524462		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000482210	ENST00000525621		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000482210	ENST00000529370		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
intron-intron	ENST00000482210	ENST00000529422		TCGA	RV	KIRP	TCGA-DW-7839-01A	ALDH1A1	chr9	75515578	-	TYK2	chr19	10491352	-
Frame-shit	ENST00000396821	ENST00000216024		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
Frame-shit	ENST00000396821	ENST00000428462		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
5CDS-intron	ENST00000396821	ENST00000464842		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
intron-3CDS	ENST00000444597	ENST00000216024		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
intron-3CDS	ENST00000444597	ENST00000428462		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
intron-intron	ENST00000444597	ENST00000464842		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
Frame-shit	ENST00000381633	ENST00000216024		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
Frame-shit	ENST00000381633	ENST00000428462		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
5CDS-intron	ENST00000381633	ENST00000464842		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
intron-3CDS	ENST00000432525	ENST00000216024		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
intron-3CDS	ENST00000432525	ENST00000428462		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
intron-intron	ENST00000432525	ENST00000464842		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	DDX17	chr22	38901956	-	DMC1	chr22	38934617	-
5CDS-5UTR	ENST00000321117	ENST00000359541		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000321117	ENST00000264720		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000264709	ENST00000359541		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000264709	ENST00000264720		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
intron-5UTR	ENST00000406659	ENST00000359541		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
intron-5UTR	ENST00000406659	ENST00000264720		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000380746	ENST00000359541		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000380746	ENST00000264720		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000402667	ENST00000359541		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000402667	ENST00000264720		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000474887	ENST00000359541		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
5CDS-5UTR	ENST00000474887	ENST00000264720		TCGA	RV	KIRP	TCGA-G7-6792-01A	DNMT3A	chr2	25458576	-	GTF3C2	chr2	27566445	-
intron-3CDS	ENST00000396231	ENST00000403222		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-5UTR	ENST00000396231	ENST00000407373		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000332585		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000382310		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000446658		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000401475		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000437268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000535268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000396231	ENST00000496575		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
Frame-shit	ENST00000262726	ENST00000403222		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-5UTR	ENST00000262726	ENST00000407373		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000332585		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000382310		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000446658		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000401475		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000437268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000535268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000262726	ENST00000496575		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
Frame-shit	ENST00000358439	ENST00000403222		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-5UTR	ENST00000358439	ENST00000407373		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000332585		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000382310		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000446658		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000401475		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000437268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000535268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000358439	ENST00000496575		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
Frame-shit	ENST00000356087	ENST00000403222		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-5UTR	ENST00000356087	ENST00000407373		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000332585		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000382310		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000446658		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000401475		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000437268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000535268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
5CDS-intron	ENST00000356087	ENST00000496575		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-3CDS	ENST00000461800	ENST00000403222		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-5UTR	ENST00000461800	ENST00000407373		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000332585		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000382310		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000446658		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000401475		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000437268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000535268		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-intron	ENST00000461800	ENST00000496575		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	EFCAB6	chr22	44178060	-	OSBP2	chr22	31090195	+
intron-5UTR	ENST00000442101	ENST00000320892		TCGA	RV	KIRP	TCGA-5P-A9K9-01A	ELF1	chr13	41634974	-	RNF144A	chr2	7081079	+
intron-3UTR	ENST00000442101	ENST00000467276		TCGA	RV	KIRP	TCGA-5P-A9K9-01A	ELF1	chr13	41634974	-	RNF144A	chr2	7081079	+
intron-5UTR	ENST00000498824	ENST00000320892		TCGA	RV	KIRP	TCGA-5P-A9K9-01A	ELF1	chr13	41634974	-	RNF144A	chr2	7081079	+
intron-3UTR	ENST00000498824	ENST00000467276		TCGA	RV	KIRP	TCGA-5P-A9K9-01A	ELF1	chr13	41634974	-	RNF144A	chr2	7081079	+
intron-5UTR	ENST00000239882	ENST00000320892		TCGA	RV	KIRP	TCGA-5P-A9K9-01A	ELF1	chr13	41634974	-	RNF144A	chr2	7081079	+
intron-3UTR	ENST00000239882	ENST00000467276		TCGA	RV	KIRP	TCGA-5P-A9K9-01A	ELF1	chr13	41634974	-	RNF144A	chr2	7081079	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	KIRP	TCGA-DW-7839-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000359534	ENST00000541979		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000465038		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000352853		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000371438		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000371436		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000576263		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000371432		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
In-frame	ENST00000359534	ENST00000359524		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
5CDS-intron	ENST00000359534	ENST00000483243		TCGA	RV	KIRP	TCGA-B9-A69E-01A	KCNK5	chr6	39161945	-	RUNX2	chr6	45479983	+
5CDS-intron	ENST00000383737	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000383737	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000395734	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000395734	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000426837	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000426837	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000360240	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000360240	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000439356	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000439356	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000264724	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000264724	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000420772	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000420772	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000441748	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000441748	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000462206	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000462206	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000434267	ENST00000284049		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
intron-intron	ENST00000434267	ENST00000511067		TCGA	RV	KIRP	TCGA-BQ-5877-01A	MAP4	chr3	47892186	-	CHD1	chr5	98219587	-
5UTR-5UTR	ENST00000399161	ENST00000380794		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000399161	ENST00000405623		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000399161	ENST00000264708		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000399161	ENST00000395826		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000428368	ENST00000380794		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000428368	ENST00000405623		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000428368	ENST00000264708		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000428368	ENST00000395826		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000407844	ENST00000380794		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000407844	ENST00000405623		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000407844	ENST00000264708		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000407844	ENST00000395826		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000471668	ENST00000380794		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000471668	ENST00000405623		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000471668	ENST00000264708		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000471668	ENST00000395826		TCGA	RV	KIRP	TCGA-G7-6792-01A	MYT1L	chr2	2057750	-	POMC	chr2	25387661	-
5CDS-intron	ENST00000303577	ENST00000367545		TCGA	RV	KIRP	TCGA-BQ-5878-01A	PCBP1	chr2	70316332	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000303577	ENST00000367526		TCGA	RV	KIRP	TCGA-BQ-5878-01A	PCBP1	chr2	70316332	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000303577	ENST00000480333		TCGA	RV	KIRP	TCGA-BQ-5878-01A	PCBP1	chr2	70316332	+	UTRN	chr6	144665237	+
5UTR-3CDS	ENST00000403565	ENST00000353891		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5UTR-3CDS	ENST00000403565	ENST00000263200		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5UTR-3CDS	ENST00000403565	ENST00000427926		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5UTR-intron	ENST00000403565	ENST00000442042		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000313237	ENST00000353891		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000313237	ENST00000263200		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000313237	ENST00000427926		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5CDS-intron	ENST00000313237	ENST00000442042		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000396103	ENST00000353891		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000396103	ENST00000263200		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000396103	ENST00000427926		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5CDS-intron	ENST00000396103	ENST00000442042		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000404079	ENST00000353891		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000404079	ENST00000263200		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000404079	ENST00000427926		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5CDS-intron	ENST00000404079	ENST00000442042		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000447824	ENST00000353891		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000447824	ENST00000263200		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000447824	ENST00000427926		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5CDS-intron	ENST00000447824	ENST00000442042		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000462631	ENST00000353891		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000462631	ENST00000263200		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000462631	ENST00000427926		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
intron-intron	ENST00000462631	ENST00000442042		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PHF21B	chr22	45404426	-	CLTCL1	chr22	19230459	-
5CDS-3UTR	ENST00000358994	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000358994	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000358994	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000358994	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000358994	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000358994	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000358994	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000358994	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000393370	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000393370	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000393370	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000393370	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000393370	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000393370	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000393370	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000393370	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000337738	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000337738	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000337738	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000337738	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000337738	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000337738	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000337738	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000337738	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000348141	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000348141	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000348141	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000348141	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000348141	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000348141	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000348141	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000348141	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000452489	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000452489	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000452489	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000452489	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000452489	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000452489	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000452489	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000452489	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000357197	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000357197	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000357197	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000357197	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000357197	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000357197	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000357197	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000357197	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000347048	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000347048	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000347048	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000347048	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000347048	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000347048	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000347048	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000347048	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000355007	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000355007	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000355007	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000355007	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-3UTR	ENST00000355007	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000355007	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000355007	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
5CDS-intron	ENST00000355007	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000423100	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000423100	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000423100	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000423100	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000423100	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000423100	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000423100	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000423100	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000524946	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000524946	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000524946	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000524946	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000524946	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000524946	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000524946	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000524946	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000436883	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000436883	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000436883	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000436883	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000436883	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000436883	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000436883	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000436883	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000414510	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000414510	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000414510	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000414510	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000414510	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000414510	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000414510	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000414510	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432124	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432124	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432124	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432124	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432124	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000432124	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000432124	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000432124	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435305	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435305	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435305	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435305	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435305	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000435305	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000435305	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000435305	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000419582	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000419582	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000419582	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000419582	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000419582	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000419582	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000419582	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000419582	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432651	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432651	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432651	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432651	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000432651	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000432651	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000432651	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000432651	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435132	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435132	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435132	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435132	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000435132	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000435132	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000435132	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000435132	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000434095	ENST00000337006		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000434095	ENST00000376083		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000434095	ENST00000357081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000434095	ENST00000376109		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3UTR	ENST00000434095	ENST00000432218		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000434095	ENST00000376081		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000434095	ENST00000491784		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-intron	ENST00000434095	ENST00000376080		TCGA	RV	KIRP	TCGA-V9-A7HT-01A	PPP2R4	chr9	131873910	+	AGTPBP1	chr9	88257858	-
intron-3CDS	ENST00000466266	ENST00000406451		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000466266	ENST00000401921		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000466266	ENST00000432645		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000466266	ENST00000441542		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000466266	ENST00000417496		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000466266	ENST00000476135		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000466266	ENST00000405010		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000466266	ENST00000428307		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000466266	ENST00000406072		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000466266	ENST00000456174		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000466266	ENST00000524023		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000428286	ENST00000406451		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000428286	ENST00000401921		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000428286	ENST00000432645		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000428286	ENST00000441542		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000428286	ENST00000417496		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000428286	ENST00000476135		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000428286	ENST00000405010		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000428286	ENST00000428307		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000428286	ENST00000406072		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000428286	ENST00000456174		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000428286	ENST00000524023		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000376718	ENST00000406451		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000376718	ENST00000401921		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000376718	ENST00000432645		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000376718	ENST00000441542		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000376718	ENST00000417496		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000376718	ENST00000476135		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000376718	ENST00000405010		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000376718	ENST00000428307		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000376718	ENST00000406072		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000376718	ENST00000456174		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000376718	ENST00000524023		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000443509	ENST00000406451		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000443509	ENST00000401921		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000443509	ENST00000432645		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000443509	ENST00000441542		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000443509	ENST00000417496		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000443509	ENST00000476135		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000443509	ENST00000405010		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000443509	ENST00000428307		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000443509	ENST00000406072		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000443509	ENST00000456174		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000443509	ENST00000524023		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000223609	ENST00000406451		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000223609	ENST00000401921		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000223609	ENST00000432645		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000223609	ENST00000441542		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000223609	ENST00000417496		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000223609	ENST00000476135		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000223609	ENST00000405010		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000223609	ENST00000428307		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000223609	ENST00000406072		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000223609	ENST00000456174		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000223609	ENST00000524023		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000376713	ENST00000406451		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000376713	ENST00000401921		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000376713	ENST00000432645		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000376713	ENST00000441542		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000376713	ENST00000417496		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000376713	ENST00000476135		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000376713	ENST00000405010		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000376713	ENST00000428307		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000376713	ENST00000406072		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000376713	ENST00000456174		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000376713	ENST00000524023		TCGA	RV	KIRP	TCGA-B9-A44B-01A	PRUNE2	chr9	79318253	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000392837	ENST00000330079		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	RIC8B	chr12	107219598	+	ORAI1	chr12	122078947	+
Frame-shit	ENST00000392839	ENST00000330079		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	RIC8B	chr12	107219598	+	ORAI1	chr12	122078947	+
Frame-shit	ENST00000355478	ENST00000330079		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	RIC8B	chr12	107219598	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000549643	ENST00000330079		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	RIC8B	chr12	107219598	+	ORAI1	chr12	122078947	+
Frame-shit	ENST00000357387	ENST00000231498		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
Frame-shit	ENST00000357387	ENST00000381843		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
Frame-shit	ENST00000357387	ENST00000513532		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
5CDS-5UTR	ENST00000357387	ENST00000502533		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
Frame-shit	ENST00000296782	ENST00000231498		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
Frame-shit	ENST00000296782	ENST00000381843		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
Frame-shit	ENST00000296782	ENST00000513532		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
5CDS-5UTR	ENST00000296782	ENST00000502533		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
intron-3CDS	ENST00000503698	ENST00000231498		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
intron-3CDS	ENST00000503698	ENST00000381843		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
intron-3CDS	ENST00000503698	ENST00000513532		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
intron-5UTR	ENST00000503698	ENST00000502533		TCGA	RV	KIRP	TCGA-HE-7130-01A	RICTOR	chr5	39074213	-	NUP155	chr5	37299670	-
Frame-shit	ENST00000389100	ENST00000325324		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
Frame-shit	ENST00000389100	ENST00000409296		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
5CDS-5UTR	ENST00000389100	ENST00000409534		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
5CDS-intron	ENST00000389100	ENST00000512177		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
Frame-shit	ENST00000296615	ENST00000325324		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
Frame-shit	ENST00000296615	ENST00000409296		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
5CDS-5UTR	ENST00000296615	ENST00000409534		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
5CDS-intron	ENST00000296615	ENST00000512177		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
Frame-shit	ENST00000381081	ENST00000325324		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
Frame-shit	ENST00000381081	ENST00000409296		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
5CDS-5UTR	ENST00000381081	ENST00000409534		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
5CDS-intron	ENST00000381081	ENST00000512177		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	RNF180	chr5	63513223	+	IPO11	chr5	61887404	+
intron-5UTR	ENST00000478754	ENST00000310574		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
intron-5UTR	ENST00000478754	ENST00000408041		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
intron-intron	ENST00000478754	ENST00000461319		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-5UTR	ENST00000398659	ENST00000310574		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-5UTR	ENST00000398659	ENST00000408041		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-intron	ENST00000398659	ENST00000461319		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-5UTR	ENST00000382125	ENST00000310574		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-5UTR	ENST00000382125	ENST00000408041		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-intron	ENST00000382125	ENST00000461319		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-5UTR	ENST00000443925	ENST00000310574		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-5UTR	ENST00000443925	ENST00000408041		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
5CDS-intron	ENST00000443925	ENST00000461319		TCGA	RV	KIRP	TCGA-G7-6792-01A	TSSC1	chr2	3341788	-	SLC5A6	chr2	27434401	-
In-frame	ENST00000586717	ENST00000293217		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000586717	ENST00000537812		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000586717	ENST00000301608		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
5CDS-5UTR	ENST00000586717	ENST00000591857		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000319129	ENST00000293217		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000319129	ENST00000537812		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000319129	ENST00000301608		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
5CDS-5UTR	ENST00000319129	ENST00000591857		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000389570	ENST00000293217		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000389570	ENST00000537812		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
In-frame	ENST00000389570	ENST00000301608		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
5CDS-5UTR	ENST00000389570	ENST00000591857		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000586631	ENST00000293217		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000586631	ENST00000537812		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000586631	ENST00000301608		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000586631	ENST00000591857		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000588478	ENST00000293217		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000588478	ENST00000537812		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000588478	ENST00000301608		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000588478	ENST00000591857		TCGA	RV	KIRP	TCGA-BQ-5893-01A	FBF1	chr17	73926078	-	ACOX1	chr17	73953647	-
5UTR-3CDS	ENST00000426256	ENST00000344710		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000426256	ENST00000397525		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000426256	ENST00000330125		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000426256	ENST00000397523		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-intron	ENST00000426256	ENST00000382180		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-intron	ENST00000426256	ENST00000441289		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000326132	ENST00000344710		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000326132	ENST00000397525		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000326132	ENST00000330125		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000326132	ENST00000397523		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-intron	ENST00000326132	ENST00000382180		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-intron	ENST00000326132	ENST00000441289		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000266252	ENST00000344710		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000266252	ENST00000397525		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000266252	ENST00000330125		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-3CDS	ENST00000266252	ENST00000397523		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-intron	ENST00000266252	ENST00000382180		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5UTR-intron	ENST00000266252	ENST00000441289		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	RNF185	chr22	31556289	+	EIF4ENIF1	chr22	31867903	-
5CDS-intron	ENST00000393651	ENST00000356362		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000393651	ENST00000469408		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000357311	ENST00000356362		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000357311	ENST00000469408		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000489828	ENST00000356362		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000489828	ENST00000469408		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000493638	ENST00000356362		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000493638	ENST00000469408		TCGA	RV	KIRP	TCGA-B9-4114-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5UTR-3CDS	ENST00000354618	ENST00000373166		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000354618	ENST00000462715		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000354618	ENST00000373163		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000354618	ENST00000373162		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000354618	ENST00000373159		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-3CDS	ENST00000469141	ENST00000373166		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000469141	ENST00000462715		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000469141	ENST00000373163		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000469141	ENST00000373162		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000469141	ENST00000373159		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000466743	ENST00000373166		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000466743	ENST00000462715		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000466743	ENST00000373163		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000466743	ENST00000373162		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000466743	ENST00000373159		TCGA	RV	KIRP	TCGA-J7-8537-01A	THRAP3	chr1	36690106	+	TRAPPC3	chr1	36605767	-
5CDS-5UTR	ENST00000276431	ENST00000389131		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
5CDS-intron	ENST00000276431	ENST00000518472		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
5CDS-5UTR	ENST00000347739	ENST00000389131		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
5CDS-intron	ENST00000347739	ENST00000518472		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
5UTR-5UTR	ENST00000542226	ENST00000389131		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
5UTR-intron	ENST00000542226	ENST00000518472		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
intron-5UTR	ENST00000519910	ENST00000389131		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
intron-intron	ENST00000519910	ENST00000518472		TCGA	RV	KIRP	TCGA-BQ-7056-01A	TNFRSF10B	chr8	22926264	-	LOXL2	chr8	23225947	-
5CDS-intron	ENST00000499247	ENST00000367545		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000499247	ENST00000367526		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000499247	ENST00000480333		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
intron-intron	ENST00000268957	ENST00000367545		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
intron-intron	ENST00000268957	ENST00000367526		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
intron-intron	ENST00000268957	ENST00000480333		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
intron-intron	ENST00000509385	ENST00000367545		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
intron-intron	ENST00000509385	ENST00000367526		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
intron-intron	ENST00000509385	ENST00000480333		TCGA	RV	KIRP	TCGA-DW-7839-01A	TOB1	chr17	48939584	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000450633	ENST00000448637		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000450633	ENST00000312675		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000450633	ENST00000543006		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000450633	ENST00000471917		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000296210	ENST00000448637		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000296210	ENST00000312675		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000296210	ENST00000543006		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000296210	ENST00000471917		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000355552	ENST00000448637		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000355552	ENST00000312675		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000355552	ENST00000543006		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000355552	ENST00000471917		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000489960	ENST00000448637		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000489960	ENST00000312675		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000489960	ENST00000543006		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000489960	ENST00000471917		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
intron-intron	ENST00000465915	ENST00000448637		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
intron-intron	ENST00000465915	ENST00000312675		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
intron-intron	ENST00000465915	ENST00000543006		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
intron-intron	ENST00000465915	ENST00000471917		TCGA	RV	KIRP	TCGA-G7-6793-01A	TPRA1	chr3	127298583	-	LPP	chr3	188583988	+
5CDS-5UTR	ENST00000317907	ENST00000409978		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	ARHGEF33	chr2	39146504	+
5CDS-5UTR	ENST00000317907	ENST00000536934		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	ARHGEF33	chr2	39146504	+
5CDS-5UTR	ENST00000317907	ENST00000398800		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	ARHGEF33	chr2	39146504	+
5CDS-intron	ENST00000317907	ENST00000483305		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	ARHGEF33	chr2	39146504	+
Frame-shit	ENST00000300896	ENST00000221233		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
5CDS-intron	ENST00000300896	ENST00000596905		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
In-frame	ENST00000592339	ENST00000221233		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
5CDS-intron	ENST00000592339	ENST00000596905		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
Frame-shit	ENST00000393003	ENST00000221233		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
5CDS-intron	ENST00000393003	ENST00000596905		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
intron-3CDS	ENST00000586881	ENST00000221233		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
intron-intron	ENST00000586881	ENST00000596905		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	USP32	chr17	58329742	-	EXOSC5	chr19	41898885	-
Frame-shit	ENST00000398204	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000398204	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000398204	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
Frame-shit	ENST00000439864	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000439864	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000439864	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
Frame-shit	ENST00000398201	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000398201	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000398201	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
Frame-shit	ENST00000265727	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000265727	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000265727	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
Frame-shit	ENST00000315984	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000315984	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000315984	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
Frame-shit	ENST00000398209	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000398209	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
5CDS-intron	ENST00000398209	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
intron-3CDS	ENST00000476330	ENST00000325885		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
intron-intron	ENST00000476330	ENST00000257621		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
intron-intron	ENST00000476330	ENST00000428113		TCGA	RV	KIRP	TCGA-B9-4116-01A	ADAM22	chr7	87754974	+	ASB4	chr7	95166883	+
In-frame	ENST00000560302	ENST00000367255		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000356820		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000423061		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000448038		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000341594		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000265368		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000367253		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000367248		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000413186		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000466159		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000539504		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000347037		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000354674		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000560302	ENST00000495090		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
In-frame	ENST00000394518	ENST00000367255		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000356820		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000423061		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000448038		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000341594		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000265368		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000367253		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000367248		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000413186		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000466159		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000539504		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000347037		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000354674		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000394518	ENST00000495090		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
In-frame	ENST00000361243	ENST00000367255		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000356820		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000423061		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000448038		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000341594		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000265368		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000367253		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000367248		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000413186		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000466159		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000539504		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000347037		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000354674		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5CDS-intron	ENST00000361243	ENST00000495090		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-3CDS	ENST00000560579	ENST00000367255		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000356820		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000423061		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000448038		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000341594		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000265368		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000367253		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000367248		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000413186		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000466159		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000539504		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000347037		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000354674		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000560579	ENST00000495090		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-3CDS	ENST00000394510	ENST00000367255		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000356820		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000423061		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000448038		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000341594		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000265368		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000367253		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000367248		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000413186		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000466159		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000539504		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000347037		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000354674		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
intron-intron	ENST00000394510	ENST00000495090		TCGA	RV	KIRP	TCGA-BQ-7061-01A	AKAP13	chr15	86077111	+	SYNE1	chr6	152861156	-
5UTR-3CDS	ENST00000328111	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
5UTR-3CDS	ENST00000348286	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
5UTR-3CDS	ENST00000353855	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
5UTR-3CDS	ENST00000443239	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
5UTR-3CDS	ENST00000344505	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
5UTR-3CDS	ENST00000375623	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
5UTR-3CDS	ENST00000456297	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
intron-3CDS	ENST00000201963	ENST00000372330		TCGA	RV	KIRP	TCGA-Y8-A8S1-01A	DNMT3B	chr20	31350505	+	MMP9	chr20	44638505	+
Frame-shit	ENST00000428084	ENST00000265720		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
Frame-shit	ENST00000428084	ENST00000402620		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
5CDS-intron	ENST00000428084	ENST00000498786		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
intron-3CDS	ENST00000494651	ENST00000265720		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
intron-3CDS	ENST00000494651	ENST00000402620		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
intron-intron	ENST00000494651	ENST00000498786		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
Frame-shit	ENST00000437633	ENST00000265720		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
Frame-shit	ENST00000437633	ENST00000402620		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
5CDS-intron	ENST00000437633	ENST00000498786		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
5UTR-3CDS	ENST00000476846	ENST00000265720		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
5UTR-3CDS	ENST00000476846	ENST00000402620		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
5UTR-intron	ENST00000476846	ENST00000498786		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	DUS4L	chr7	107216811	+
5CDS-intron	ENST00000234590	ENST00000261531		TCGA	RV	KIRP	TCGA-BQ-7061-01A	ENO1	chr1	8921061	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000234590	ENST00000554775		TCGA	RV	KIRP	TCGA-BQ-7061-01A	ENO1	chr1	8921061	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000234590	ENST00000555761		TCGA	RV	KIRP	TCGA-BQ-7061-01A	ENO1	chr1	8921061	-	SNW1	chr14	78189203	-
intron-intron	ENST00000544892	ENST00000233057		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000544892	ENST00000395127		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000544892	ENST00000405334		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000320031	ENST00000233057		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000320031	ENST00000395127		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000320031	ENST00000405334		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000007722	ENST00000233057		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000007722	ENST00000395127		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000007722	ENST00000405334		TCGA	RV	KIRP	TCGA-G7-6793-01A	ITGA3	chr17	48167848	+	EIF2AK2	chr2	37342384	-
5UTR-5UTR	ENST00000497036	ENST00000328544		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
5UTR-5UTR	ENST00000497036	ENST00000402501		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
5CDS-5UTR	ENST00000395780	ENST00000328544		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
5CDS-5UTR	ENST00000395780	ENST00000402501		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
5CDS-5UTR	ENST00000215659	ENST00000328544		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
5CDS-5UTR	ENST00000215659	ENST00000402501		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
intron-5UTR	ENST00000395778	ENST00000328544		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
intron-5UTR	ENST00000395778	ENST00000402501		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	MAPK12	chr22	50693626	-	SSTR3	chr22	37603878	-
intron-3CDS	ENST00000340635	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000340635	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000340635	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000360047	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000360047	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000360047	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
Frame-shit	ENST00000507116	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
5CDS-intron	ENST00000507116	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
5CDS-intron	ENST00000507116	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000502484	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000502484	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000502484	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000546160	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000546160	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000546160	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
Frame-shit	ENST00000502575	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
5CDS-intron	ENST00000502575	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
5CDS-intron	ENST00000502575	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000358923	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000358923	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000358923	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000503258	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000503258	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000503258	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000405755	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000405755	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000405755	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000317118	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000317118	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000317118	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-3CDS	ENST00000503947	ENST00000389100		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000503947	ENST00000296615		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
intron-intron	ENST00000503947	ENST00000381081		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PDE4D	chr5	59064073	-	RNF180	chr5	63665442	+
Frame-shit	ENST00000313486	ENST00000301335		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
Frame-shit	ENST00000313486	ENST00000571650		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
Frame-shit	ENST00000313486	ENST00000382147		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
5CDS-intron	ENST00000313486	ENST00000412517		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
5CDS-intron	ENST00000313486	ENST00000574274		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
Frame-shit	ENST00000539476	ENST00000301335		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
Frame-shit	ENST00000539476	ENST00000571650		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
Frame-shit	ENST00000539476	ENST00000382147		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
5CDS-intron	ENST00000539476	ENST00000412517		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
5CDS-intron	ENST00000539476	ENST00000574274		TCGA	RV	KIRP	TCGA-G7-6793-01A	PITPNA	chr17	1442163	-	SLC43A2	chr17	1520063	-
5CDS-5UTR	ENST00000554335	ENST00000395159		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-intron	ENST00000554335	ENST00000216463		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000554335	ENST00000555593		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000554335	ENST00000556007		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000554335	ENST00000555061		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000554335	ENST00000555404		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000251091	ENST00000395159		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-intron	ENST00000251091	ENST00000216463		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000251091	ENST00000555593		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000251091	ENST00000556007		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000251091	ENST00000555061		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000251091	ENST00000555404		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
3UTR-5UTR	ENST00000555112	ENST00000395159		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
3UTR-intron	ENST00000555112	ENST00000216463		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
3UTR-5UTR	ENST00000555112	ENST00000555593		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
3UTR-5UTR	ENST00000555112	ENST00000556007		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
3UTR-5UTR	ENST00000555112	ENST00000555061		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
3UTR-5UTR	ENST00000555112	ENST00000555404		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000392067	ENST00000395159		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-intron	ENST00000392067	ENST00000216463		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000392067	ENST00000555593		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000392067	ENST00000556007		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000392067	ENST00000555061		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000392067	ENST00000555404		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000357634	ENST00000395159		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-intron	ENST00000357634	ENST00000216463		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000357634	ENST00000555593		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000357634	ENST00000556007		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000357634	ENST00000555061		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000357634	ENST00000555404		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000555192	ENST00000395159		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
intron-intron	ENST00000555192	ENST00000216463		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000555192	ENST00000555593		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000555192	ENST00000556007		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000555192	ENST00000555061		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
intron-5UTR	ENST00000555192	ENST00000555404		TCGA	RV	KIRP	TCGA-A4-7997-01A	SAMD4A	chr14	55034830	+	TIMM9	chr14	58878689	-
5CDS-5UTR	ENST00000301923	ENST00000322611		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17275317	+
5CDS-5UTR	ENST00000402203	ENST00000322611		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17275317	+
intron-5UTR	ENST00000454349	ENST00000322611		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17275317	+
intron-5UTR	ENST00000335727	ENST00000322611		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17275317	+
intron-5UTR	ENST00000497559	ENST00000322611		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17275317	+
Frame-shit	ENST00000357056	ENST00000261991		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
Frame-shit	ENST00000357056	ENST00000536315		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
Frame-shit	ENST00000357056	ENST00000418736		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
5CDS-5UTR	ENST00000357056	ENST00000556304		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
Frame-shit	ENST00000328459	ENST00000261991		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
Frame-shit	ENST00000328459	ENST00000536315		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
Frame-shit	ENST00000328459	ENST00000418736		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
5CDS-5UTR	ENST00000328459	ENST00000556304		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
intron-3CDS	ENST00000554654	ENST00000261991		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
intron-3CDS	ENST00000554654	ENST00000536315		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
intron-3CDS	ENST00000554654	ENST00000418736		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
intron-5UTR	ENST00000554654	ENST00000556304		TCGA	RV	KIRP	TCGA-G7-6793-01A	TTC7B	chr14	91161844	-	RPS6KA5	chr14	91372643	-
5CDS-intron	ENST00000331925	ENST00000513761		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000347613		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000360642		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000504131		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000506924		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000513761		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000347613		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000360642		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000504131		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000506924		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000513761		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000347613		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000360642		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000504131		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000506924		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000513761		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000347613		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000360642		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000504131		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000506924		TCGA	RV	KIRP	TCGA-BQ-5878-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000434909	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000434909	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000509504	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000509504	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000311813	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000311813	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000482461	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000482461	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000441328	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000441328	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000409899	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000409899	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000409611	ENST00000371917		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000409611	ENST00000493140		TCGA	RV	KIRP	TCGA-BQ-7051-01A	AQP1	chr7	30965131	+	ARFGEF2	chr20	47615777	+
In-frame	ENST00000357429	ENST00000607517		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
In-frame	ENST00000357429	ENST00000378012		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
In-frame	ENST00000357429	ENST00000378009		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
Frame-shit	ENST00000397100	ENST00000607517		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
Frame-shit	ENST00000397100	ENST00000378012		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
Frame-shit	ENST00000397100	ENST00000378009		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
Frame-shit	ENST00000397098	ENST00000607517		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
Frame-shit	ENST00000397098	ENST00000378012		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
Frame-shit	ENST00000397098	ENST00000378009		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
5UTR-3CDS	ENST00000488073	ENST00000607517		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
5UTR-3CDS	ENST00000488073	ENST00000378012		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
5UTR-3CDS	ENST00000488073	ENST00000378009		TCGA	RV	KIRP	TCGA-B9-A44B-01A	C7orf50	chr7	1166893	-	CD177	chr19	43858005	+
In-frame	ENST00000447467	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000447467	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000447467	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000324972	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000324972	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000324972	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000537881	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000537881	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000537881	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000437599	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000437599	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000437599	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000359388	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000359388	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000359388	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000413338	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000413338	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000413338	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000457059	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000457059	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
In-frame	ENST00000457059	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000497626	ENST00000242351		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000497626	ENST00000464606		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
intron-3CDS	ENST00000497626	ENST00000471652		TCGA	RV	KIRP	TCGA-B9-4116-01A	DYNC1I1	chr7	95457428	+	ZC3HAV1	chr7	138774505	-
5CDS-5UTR	ENST00000268182	ENST00000354377		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-intron	ENST00000268182	ENST00000558115		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-5UTR	ENST00000268182	ENST00000379090		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000354377		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560738	ENST00000558115		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000379090		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000354377		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560020	ENST00000558115		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000379090		TCGA	RV	KIRP	TCGA-5P-A9K4-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
Frame-shit	ENST00000296585	ENST00000389100		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	ITGA2	chr5	52285362	+	RNF180	chr5	63621013	+
5CDS-intron	ENST00000296585	ENST00000296615		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	ITGA2	chr5	52285362	+	RNF180	chr5	63621013	+
5CDS-intron	ENST00000296585	ENST00000381081		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	ITGA2	chr5	52285362	+	RNF180	chr5	63621013	+
5CDS-5UTR	ENST00000263881	ENST00000402989		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000263881	ENST00000448223		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000263881	ENST00000351948		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000263881	ENST00000381272		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-intron	ENST00000263881	ENST00000489535		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000437545	ENST00000402989		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000437545	ENST00000448223		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000437545	ENST00000351948		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000437545	ENST00000381272		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-intron	ENST00000437545	ENST00000489535		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000341681	ENST00000402989		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000341681	ENST00000448223		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000341681	ENST00000351948		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000341681	ENST00000381272		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-intron	ENST00000341681	ENST00000489535		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000484274	ENST00000402989		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000484274	ENST00000448223		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000484274	ENST00000351948		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-5UTR	ENST00000484274	ENST00000381272		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
5CDS-intron	ENST00000484274	ENST00000489535		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000536018	ENST00000402989		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000536018	ENST00000448223		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000536018	ENST00000351948		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000536018	ENST00000381272		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-intron	ENST00000536018	ENST00000489535		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000474502	ENST00000402989		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000474502	ENST00000448223		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000474502	ENST00000351948		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-5UTR	ENST00000474502	ENST00000381272		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
intron-intron	ENST00000474502	ENST00000489535		TCGA	RV	KIRP	TCGA-G7-6792-01A	MAP4K3	chr2	39664033	-	SMC6	chr2	17927218	-
Frame-shit	ENST00000495893	ENST00000231706		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000495893	ENST00000466168		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000494943	ENST00000231706		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000494943	ENST00000466168		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000467570	ENST00000231706		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000467570	ENST00000466168		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000474275	ENST00000231706		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
intron-intron	ENST00000474275	ENST00000466168		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000497658	ENST00000231706		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
intron-intron	ENST00000497658	ENST00000466168		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000481639	ENST00000231706		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
intron-intron	ENST00000481639	ENST00000466168		TCGA	RV	KIRP	TCGA-G7-6793-01A	PHC3	chr3	169863211	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000206451	ENST00000308724		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000206451	ENST00000397120		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000206451	ENST00000556277		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000559123	ENST00000308724		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000559123	ENST00000397120		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000559123	ENST00000556277		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000382708	ENST00000308724		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000382708	ENST00000397120		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000382708	ENST00000556277		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
In-frame	ENST00000561435	ENST00000308724		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000561435	ENST00000397120		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000561435	ENST00000556277		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000470718	ENST00000308724		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000470718	ENST00000397120		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000470718	ENST00000556277		TCGA	RV	KIRP	TCGA-A4-7287-01A	PSME1	chr14	24608175	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000546530	ENST00000314045		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000546530	ENST00000306014		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5CDS-intron	ENST00000546530	ENST00000549271		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000261729	ENST00000314045		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000261729	ENST00000306014		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5CDS-intron	ENST00000261729	ENST00000549271		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000446861	ENST00000314045		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000446861	ENST00000306014		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5CDS-intron	ENST00000446861	ENST00000549271		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000548055	ENST00000314045		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000548055	ENST00000306014		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5CDS-intron	ENST00000548055	ENST00000549271		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5UTR-3CDS	ENST00000418411	ENST00000314045		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5UTR-3CDS	ENST00000418411	ENST00000306014		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
5UTR-intron	ENST00000418411	ENST00000549271		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	RASAL1	chr12	113552605	-	DDX54	chr12	113603837	-
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	KIRP	TCGA-B1-7332-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-intron	ENST00000588651	ENST00000319545		TCGA	RV	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11708445	+	MRI1	chr19	13879375	+
intron-intron	ENST00000588651	ENST00000040663		TCGA	RV	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11708445	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000361113	ENST00000319545		TCGA	RV	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11708445	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000361113	ENST00000040663		TCGA	RV	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11708445	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000588174	ENST00000319545		TCGA	RV	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11708445	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000588174	ENST00000040663		TCGA	RV	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11708445	+	MRI1	chr19	13879375	+
5CDS-intron	ENST00000338110	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000338110	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000338110	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
3UTR-intron	ENST00000395248	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
3UTR-intron	ENST00000395248	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
3UTR-intron	ENST00000395248	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000575627	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000575627	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000575627	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000566897	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000566897	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000566897	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000569545	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000569545	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000569545	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000563060	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000563060	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000563060	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000412304	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000412304	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000412304	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
3UTR-intron	ENST00000564546	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
3UTR-intron	ENST00000564546	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
3UTR-intron	ENST00000564546	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000564595	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000564595	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
5CDS-intron	ENST00000564595	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000569798	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000569798	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000569798	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000395240	ENST00000314045		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000395240	ENST00000306014		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
intron-intron	ENST00000395240	ENST00000549271		TCGA	RV	KIRP	TCGA-EV-5902-01A	ALDOA	chr16	30081734	+	DDX54	chr12	113621607	-
Frame-shit	ENST00000428084	ENST00000005259		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-5UTR	ENST00000428084	ENST00000465919		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000428084	ENST00000494086		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000428084	ENST00000445771		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000428084	ENST00000379117		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000428084	ENST00000379119		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-intron	ENST00000428084	ENST00000379121		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-3CDS	ENST00000494651	ENST00000005259		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-5UTR	ENST00000494651	ENST00000465919		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-3UTR	ENST00000494651	ENST00000494086		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-3UTR	ENST00000494651	ENST00000445771		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-3UTR	ENST00000494651	ENST00000379117		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-3UTR	ENST00000494651	ENST00000379119		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
intron-intron	ENST00000494651	ENST00000379121		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
Frame-shit	ENST00000437633	ENST00000005259		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-5UTR	ENST00000437633	ENST00000465919		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000437633	ENST00000494086		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000437633	ENST00000445771		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000437633	ENST00000379117		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-3UTR	ENST00000437633	ENST00000379119		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-intron	ENST00000437633	ENST00000379121		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-3CDS	ENST00000476846	ENST00000005259		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-5UTR	ENST00000476846	ENST00000465919		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-3UTR	ENST00000476846	ENST00000494086		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-3UTR	ENST00000476846	ENST00000445771		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-3UTR	ENST00000476846	ENST00000379117		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-3UTR	ENST00000476846	ENST00000379119		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5UTR-intron	ENST00000476846	ENST00000379121		TCGA	RV	KIRP	TCGA-B9-4116-01A	DOCK4	chr7	111846157	-	BCAP29	chr7	107224327	+
5CDS-5UTR	ENST00000263026	ENST00000289416		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
5CDS-5UTR	ENST00000263026	ENST00000440284		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
5CDS-intron	ENST00000263026	ENST00000450120		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
5CDS-intron	ENST00000263026	ENST00000567387		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
intron-5UTR	ENST00000561791	ENST00000289416		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
intron-5UTR	ENST00000561791	ENST00000440284		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
intron-intron	ENST00000561791	ENST00000450120		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
intron-intron	ENST00000561791	ENST00000567387		TCGA	RV	KIRP	TCGA-BQ-5887-01A	EEF2K	chr16	22262643	+	ACSM3	chr16	20781306	+
5UTR-3CDS	ENST00000370918	ENST00000536985		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000379789		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000540253		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000317350		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000379785		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000379782		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000360521		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370918	ENST00000379775		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000536985		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000379789		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000540253		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000317350		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000379785		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000379782		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000360521		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000304434	ENST00000379775		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000536985		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000379789		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000540253		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000317350		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000379785		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000379782		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000360521		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
intron-3CDS	ENST00000542638	ENST00000379775		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000536985		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000379789		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000540253		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000317350		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000379785		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000379782		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000360521		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000541407	ENST00000379775		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000536985		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000379789		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000540253		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000317350		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000379785		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000379782		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000360521		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000486973	ENST00000379775		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000536985		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000379789		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000540253		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000317350		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000379785		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000379782		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000360521		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
5UTR-3CDS	ENST00000370913	ENST00000379775		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ELOVL5	chr6	53213615	-	PFKFB3	chr10	6255586	+
In-frame	ENST00000296585	ENST00000536101		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ITGA2	chr5	52353931	+	MYO18B	chr22	26388329	+
In-frame	ENST00000296585	ENST00000335473		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ITGA2	chr5	52353931	+	MYO18B	chr22	26388329	+
In-frame	ENST00000296585	ENST00000407587		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ITGA2	chr5	52353931	+	MYO18B	chr22	26388329	+
5CDS-intron	ENST00000296585	ENST00000536204		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ITGA2	chr5	52353931	+	MYO18B	chr22	26388329	+
Frame-shit	ENST00000592782	ENST00000591513		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
5CDS-intron	ENST00000592782	ENST00000590423		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
5CDS-intron	ENST00000592782	ENST00000253410		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
5CDS-intron	ENST00000592782	ENST00000587021		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
Frame-shit	ENST00000258960	ENST00000591513		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
5CDS-intron	ENST00000258960	ENST00000590423		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
5CDS-intron	ENST00000258960	ENST00000253410		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
5CDS-intron	ENST00000258960	ENST00000587021		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
3UTR-3CDS	ENST00000590114	ENST00000591513		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
3UTR-intron	ENST00000590114	ENST00000590423		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
3UTR-intron	ENST00000590114	ENST00000253410		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
3UTR-intron	ENST00000590114	ENST00000587021		TCGA	RV	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42926622	+
Frame-shit	ENST00000357387	ENST00000371996		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
Frame-shit	ENST00000357387	ENST00000371994		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
Frame-shit	ENST00000357387	ENST00000536010		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000357387	ENST00000472891		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
Frame-shit	ENST00000296782	ENST00000371996		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
Frame-shit	ENST00000296782	ENST00000371994		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
Frame-shit	ENST00000296782	ENST00000536010		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000296782	ENST00000472891		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000503698	ENST00000371996		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000503698	ENST00000371994		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
intron-3CDS	ENST00000503698	ENST00000536010		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
intron-3UTR	ENST00000503698	ENST00000472891		TCGA	RV	KIRP	TCGA-DW-7841-01A	RICTOR	chr5	38991051	-	MINPP1	chr10	89311839	+
In-frame	ENST00000284637	ENST00000439128		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
In-frame	ENST00000284637	ENST00000511633		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
In-frame	ENST00000284637	ENST00000510533		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
In-frame	ENST00000284637	ENST00000507142		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
In-frame	ENST00000284637	ENST00000512193		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
Frame-shit	ENST00000508685	ENST00000439128		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
Frame-shit	ENST00000508685	ENST00000511633		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
Frame-shit	ENST00000508685	ENST00000510533		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
Frame-shit	ENST00000508685	ENST00000507142		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
Frame-shit	ENST00000508685	ENST00000512193		TCGA	RV	KIRP	TCGA-G7-6793-01A	SH3RF1	chr4	170037420	-	NEK1	chr4	170327898	-
5CDS-3UTR	ENST00000325411	ENST00000361658		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000325411	ENST00000395544		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000325411	ENST00000580130		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
intron-3UTR	ENST00000463318	ENST00000361658		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
intron-intron	ENST00000463318	ENST00000395544		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
intron-intron	ENST00000463318	ENST00000580130		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
5CDS-3UTR	ENST00000350657	ENST00000361658		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000350657	ENST00000395544		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000350657	ENST00000580130		TCGA	RV	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19619746	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000346169	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000346169	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000346169	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000414031	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000414031	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000414031	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000392537	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000392537	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000392537	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000382330	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000382330	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000382330	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000350481	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000350481	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000350481	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000352767	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000352767	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000352767	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000427845	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000427845	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000427845	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000342981	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000342981	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
3UTR-intron	ENST00000342981	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000319274	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000319274	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000319274	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000424196	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000424196	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000424196	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000411531	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000411531	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000411531	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000441154	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000441154	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000441154	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000434061	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000434061	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000434061	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000435046	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000435046	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000435046	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-5879-01A	EIF4G1	chr3	184053139	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000391976	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000391976	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000391976	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000310931	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000310931	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000310931	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000391975	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000391975	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000391975	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000427183	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000427183	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000427183	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000476807	ENST00000360359		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000476807	ENST00000535627		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000476807	ENST00000470698		TCGA	RV	KIRP	TCGA-BQ-7046-01A	HDLBP	chr2	242168639	-	ANKS1A	chr6	34977682	+
In-frame	ENST00000551577	ENST00000265594		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
In-frame	ENST00000551577	ENST00000492597		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
Frame-shit	ENST00000551577	ENST00000539926		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
5CDS-5UTR	ENST00000551577	ENST00000489909		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
In-frame	ENST00000266534	ENST00000265594		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
In-frame	ENST00000266534	ENST00000492597		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
Frame-shit	ENST00000266534	ENST00000539926		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
5CDS-5UTR	ENST00000266534	ENST00000489909		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
In-frame	ENST00000536799	ENST00000265594		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
In-frame	ENST00000536799	ENST00000492597		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
Frame-shit	ENST00000536799	ENST00000539926		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
5CDS-5UTR	ENST00000536799	ENST00000489909		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
intron-3CDS	ENST00000546978	ENST00000265594		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
intron-3CDS	ENST00000546978	ENST00000492597		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
intron-3CDS	ENST00000546978	ENST00000539926		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
intron-5UTR	ENST00000546978	ENST00000489909		TCGA	RV	KIRP	TCGA-G7-6793-01A	TMEM117	chr12	44693522	+	MCCC1	chr3	182740342	-
Frame-shit	ENST00000358303	ENST00000398204		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000358303	ENST00000439864		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000358303	ENST00000398201		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000358303	ENST00000265727		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000358303	ENST00000315984		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000358303	ENST00000398209		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000358303	ENST00000476330		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000360708	ENST00000398204		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000360708	ENST00000439864		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000360708	ENST00000398201		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000360708	ENST00000265727		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000360708	ENST00000315984		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000360708	ENST00000398209		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000360708	ENST00000476330		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000311873	ENST00000398204		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000311873	ENST00000439864		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000311873	ENST00000398201		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000311873	ENST00000265727		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000311873	ENST00000315984		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000311873	ENST00000398209		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000311873	ENST00000476330		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000481503	ENST00000398204		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000481503	ENST00000439864		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000481503	ENST00000398201		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000481503	ENST00000265727		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000481503	ENST00000315984		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
Frame-shit	ENST00000481503	ENST00000398209		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
5CDS-intron	ENST00000481503	ENST00000476330		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZC3HC1	chr7	129691061	-	ADAM22	chr7	87704941	+
5CDS-5UTR	ENST00000216194	ENST00000382275		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000216194	ENST00000507958		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000216194	ENST00000502796		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000216194	ENST00000511273		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000216194	ENST00000274170		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000216194	ENST00000506372		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000216194	ENST00000510297		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000454266	ENST00000382275		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000454266	ENST00000507958		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000454266	ENST00000502796		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000454266	ENST00000511273		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000454266	ENST00000274170		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000454266	ENST00000506372		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000454266	ENST00000510297		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000342312	ENST00000382275		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000342312	ENST00000507958		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000342312	ENST00000502796		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000342312	ENST00000511273		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000342312	ENST00000274170		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000342312	ENST00000506372		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000342312	ENST00000510297		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-5UTR	ENST00000480775	ENST00000382275		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-5UTR	ENST00000480775	ENST00000507958		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-5UTR	ENST00000480775	ENST00000502796		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-intron	ENST00000480775	ENST00000511273		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-intron	ENST00000480775	ENST00000274170		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-intron	ENST00000480775	ENST00000506372		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
3UTR-intron	ENST00000480775	ENST00000510297		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ADSL	chr22	40757346	+	CDH18	chr5	19981287	-
Frame-shit	ENST00000379370	ENST00000263593		TCGA	RV	KIRP	TCGA-EV-5902-01A	AGRN	chr1	991492	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000379370	ENST00000545756		TCGA	RV	KIRP	TCGA-EV-5902-01A	AGRN	chr1	991492	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000379370	ENST00000525730		TCGA	RV	KIRP	TCGA-EV-5902-01A	AGRN	chr1	991492	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000477585	ENST00000263593		TCGA	RV	KIRP	TCGA-EV-5902-01A	AGRN	chr1	991492	+	SIAE	chr11	124543777	-
intron-intron	ENST00000477585	ENST00000545756		TCGA	RV	KIRP	TCGA-EV-5902-01A	AGRN	chr1	991492	+	SIAE	chr11	124543777	-
intron-intron	ENST00000477585	ENST00000525730		TCGA	RV	KIRP	TCGA-EV-5902-01A	AGRN	chr1	991492	+	SIAE	chr11	124543777	-
5CDS-5UTR	ENST00000288602	ENST00000409469		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	BRAF	chr7	140549911	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000288602	ENST00000602748		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	BRAF	chr7	140549911	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000288602	ENST00000325222		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	BRAF	chr7	140549911	-	CUL1	chr7	148427054	+
Frame-shit	ENST00000382065	ENST00000320895		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000382065	ENST00000507807		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
In-frame	ENST00000382065	ENST00000320927		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5CDS-5UTR	ENST00000382065	ENST00000506641		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000231338	ENST00000320895		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
Frame-shit	ENST00000231338	ENST00000507807		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
In-frame	ENST00000231338	ENST00000320927		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5CDS-5UTR	ENST00000231338	ENST00000506641		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000513065	ENST00000320895		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000513065	ENST00000507807		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000513065	ENST00000320927		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5UTR-5UTR	ENST00000513065	ENST00000506641		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	C1QTNF3	chr5	34028859	-	CLPTM1L	chr5	1318568	-
5UTR-3CDS	ENST00000457734	ENST00000477593		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
5UTR-intron	ENST00000457734	ENST00000544716		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
5UTR-intron	ENST00000457734	ENST00000289153		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
intron-3CDS	ENST00000337777	ENST00000477593		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
intron-intron	ENST00000337777	ENST00000544716		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
intron-intron	ENST00000337777	ENST00000289153		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
intron-3CDS	ENST00000497002	ENST00000477593		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
intron-intron	ENST00000497002	ENST00000544716		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
intron-intron	ENST00000497002	ENST00000289153		TCGA	RV	KIRP	TCGA-G7-6793-01A	PLS1	chr3	142315351	+	PIK3CB	chr3	138456728	-
Frame-shit	ENST00000264158	ENST00000389484		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
5CDS-intron	ENST00000264158	ENST00000486364		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
Frame-shit	ENST00000539493	ENST00000389484		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
5CDS-intron	ENST00000539493	ENST00000486364		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
Frame-shit	ENST00000442034	ENST00000389484		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
5CDS-intron	ENST00000442034	ENST00000486364		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
3UTR-3CDS	ENST00000487003	ENST00000389484		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
3UTR-intron	ENST00000487003	ENST00000486364		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
intron-3CDS	ENST00000425393	ENST00000389484		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
intron-intron	ENST00000425393	ENST00000486364		TCGA	RV	KIRP	TCGA-BQ-5878-01A	RAB3GAP1	chr2	135851263	+	LRP1B	chr2	141739845	-
Frame-shit	ENST00000274192	ENST00000382065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000274192	ENST00000231338		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000274192	ENST00000513065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000537411	ENST00000382065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000537411	ENST00000231338		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000537411	ENST00000513065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
3UTR-3CDS	ENST00000504286	ENST00000382065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
3UTR-3CDS	ENST00000504286	ENST00000231338		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
3UTR-intron	ENST00000504286	ENST00000513065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000538824	ENST00000382065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000538824	ENST00000231338		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
5CDS-intron	ENST00000538824	ENST00000513065		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	SRD5A1	chr5	6633982	+	C1QTNF3	chr5	34035863	-
Frame-shit	ENST00000337768	ENST00000302188		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000337768	ENST00000444339		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
intron-3CDS	ENST00000406540	ENST00000302188		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
intron-intron	ENST00000406540	ENST00000444339		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
5UTR-3CDS	ENST00000405491	ENST00000302188		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
5UTR-intron	ENST00000405491	ENST00000444339		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
intron-3CDS	ENST00000464789	ENST00000302188		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
intron-intron	ENST00000464789	ENST00000444339		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
Frame-shit	ENST00000404798	ENST00000302188		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000404798	ENST00000444339		TCGA	RV	KIRP	TCGA-BQ-5889-01A	SUPT7L	chr2	27885046	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000234590	ENST00000367669		TCGA	RV	KIRP	TCGA-B9-5156-01A	ENO1	chr1	8921061	-	RFWD2	chr1	176129420	-
5CDS-intron	ENST00000234590	ENST00000308769		TCGA	RV	KIRP	TCGA-B9-5156-01A	ENO1	chr1	8921061	-	RFWD2	chr1	176129420	-
Frame-shit	ENST00000289081	ENST00000380738		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000289081	ENST00000380733		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000289081	ENST00000380715		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000289081	ENST00000380716		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000289081	ENST00000397519		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
5CDS-intron	ENST00000289081	ENST00000484265		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000375305	ENST00000380738		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000375305	ENST00000380733		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000375305	ENST00000380715		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000375305	ENST00000380716		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
Frame-shit	ENST00000375305	ENST00000397519		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
5CDS-intron	ENST00000375305	ENST00000484265		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000464653	ENST00000380738		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000464653	ENST00000380733		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000464653	ENST00000380715		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000464653	ENST00000380716		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000464653	ENST00000397519		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
intron-intron	ENST00000464653	ENST00000484265		TCGA	RV	KIRP	TCGA-SX-A71V-01A	FANCC	chr9	97912205	-	PSIP1	chr9	15490122	-
3UTR-intron	ENST00000378565	ENST00000518164		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000521291		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000396070		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000287038		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000523172		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000518164		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000521291		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000396070		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000287038		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000523172		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
intron-3CDS	ENST00000458477	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000458477	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000458477	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000228307	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
In-frame	ENST00000228307	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000228307	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000424649	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
In-frame	ENST00000424649	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000424649	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000397506	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000397506	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000397506	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000536957	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000536957	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000536957	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000267257	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
In-frame	ENST00000267257	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000267257	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000538144	ENST00000308366		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000538144	ENST00000423423		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000538144	ENST00000549767		TCGA	RV	KIRP	TCGA-SX-A7SM-01A	PXN	chr12	120703420	-	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000323482	ENST00000287218		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000323482	ENST00000373391		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-intron	ENST00000323482	ENST00000463847		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000432802	ENST00000287218		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000432802	ENST00000373391		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-intron	ENST00000432802	ENST00000463847		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000376726	ENST00000287218		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000376726	ENST00000373391		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-intron	ENST00000376726	ENST00000463847		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000484396	ENST00000287218		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000484396	ENST00000373391		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-intron	ENST00000484396	ENST00000463847		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
Frame-shit	ENST00000537502	ENST00000287218		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
Frame-shit	ENST00000537502	ENST00000373391		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
5CDS-intron	ENST00000537502	ENST00000463847		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000542618	ENST00000287218		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-3CDS	ENST00000542618	ENST00000373391		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
intron-intron	ENST00000542618	ENST00000463847		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ACSS1	chr20	24986874	-	ZFAND3	chr6	38029369	+
3UTR-3CDS	ENST00000378565	ENST00000282605		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
3UTR-3CDS	ENST00000378565	ENST00000515554		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
3UTR-intron	ENST00000378565	ENST00000361895		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
3UTR-intron	ENST00000378565	ENST00000402835		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
3UTR-intron	ENST00000378565	ENST00000395003		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
Frame-shit	ENST00000378549	ENST00000282605		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
Frame-shit	ENST00000378549	ENST00000515554		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
5CDS-intron	ENST00000378549	ENST00000361895		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
5CDS-intron	ENST00000378549	ENST00000402835		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
5CDS-intron	ENST00000378549	ENST00000395003		TCGA	RV	KIRP	TCGA-HE-7129-01A	ITM2B	chr13	48835524	+	PHF15	chr5	133861347	+
5CDS-5UTR	ENST00000315872	ENST00000406961		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-intron	ENST00000315872	ENST00000469850		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000315872	ENST00000405141		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000315872	ENST00000407230		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000315872	ENST00000538539		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000315872	ENST00000288599		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000315872	ENST00000348332		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-5UTR	ENST00000315872	ENST00000395856		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000406961		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-intron	ENST00000462366	ENST00000469850		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000405141		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000407230		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000538539		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000288599		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000348332		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000462366	ENST00000395856		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000406961		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-intron	ENST00000401753	ENST00000469850		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000405141		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000407230		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000538539		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000288599		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000348332		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
intron-5UTR	ENST00000401753	ENST00000395856		TCGA	RV	KIRP	TCGA-G7-6792-01A	ROCK2	chr2	11484122	-	NCOA1	chr2	24866835	+
5CDS-intron	ENST00000337225	ENST00000313164		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CXCL14	chr5	134906376	-	C7	chr5	40954982	+
5CDS-intron	ENST00000337225	ENST00000494960		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CXCL14	chr5	134906376	-	C7	chr5	40954982	+
5CDS-intron	ENST00000512158	ENST00000313164		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CXCL14	chr5	134906376	-	C7	chr5	40954982	+
5CDS-intron	ENST00000512158	ENST00000494960		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CXCL14	chr5	134906376	-	C7	chr5	40954982	+
5UTR-3CDS	ENST00000216554	ENST00000256646		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
5UTR-intron	ENST00000216554	ENST00000602566		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
5UTR-intron	ENST00000216554	ENST00000493703		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
intron-3CDS	ENST00000558506	ENST00000256646		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
intron-intron	ENST00000558506	ENST00000602566		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
intron-intron	ENST00000558506	ENST00000493703		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
3UTR-3CDS	ENST00000560200	ENST00000256646		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
3UTR-intron	ENST00000560200	ENST00000602566		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
3UTR-intron	ENST00000560200	ENST00000493703		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
intron-3CDS	ENST00000392715	ENST00000256646		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
intron-intron	ENST00000392715	ENST00000602566		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
intron-intron	ENST00000392715	ENST00000493703		TCGA	RV	KIRP	TCGA-MH-A855-01A	EIF5	chr14	103800934	+	NOTCH2	chr1	120465069	-
5CDS-3UTR	ENST00000376425	ENST00000263233		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-3UTR	ENST00000376425	ENST00000538567		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-intron	ENST00000376425	ENST00000479808		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-3UTR	ENST00000376444	ENST00000263233		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-3UTR	ENST00000376444	ENST00000538567		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-intron	ENST00000376444	ENST00000479808		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-3UTR	ENST00000376441	ENST00000263233		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-3UTR	ENST00000376441	ENST00000538567		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
5CDS-intron	ENST00000376441	ENST00000479808		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
intron-3UTR	ENST00000473581	ENST00000263233		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
intron-3UTR	ENST00000473581	ENST00000538567		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
intron-intron	ENST00000473581	ENST00000479808		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
intron-3UTR	ENST00000376423	ENST00000263233		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
intron-3UTR	ENST00000376423	ENST00000538567		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
intron-intron	ENST00000376423	ENST00000479808		TCGA	RV	KIRP	TCGA-HE-7130-01A	GRIPAP1	chrX	48834717	-	SYP	chrX	49045735	-
Frame-shit	ENST00000296684	ENST00000332149		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	NDUFS4	chr5	52954454	+	TMPRSS2	chr21	42838080	-
In-frame	ENST00000296684	ENST00000398585		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	NDUFS4	chr5	52954454	+	TMPRSS2	chr21	42838080	-
Frame-shit	ENST00000296684	ENST00000458356		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	NDUFS4	chr5	52954454	+	TMPRSS2	chr21	42838080	-
5CDS-intron	ENST00000296684	ENST00000497881		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	NDUFS4	chr5	52954454	+	TMPRSS2	chr21	42838080	-
In-frame	ENST00000350028	ENST00000400521		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
Frame-shit	ENST00000350028	ENST00000400519		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
Frame-shit	ENST00000350028	ENST00000535882		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
Frame-shit	ENST00000350028	ENST00000334363		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
In-frame	ENST00000350028	ENST00000400518		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
In-frame	ENST00000350028	ENST00000542719		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5CDS-5UTR	ENST00000350028	ENST00000491939		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-3CDS	ENST00000493161	ENST00000400521		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-3CDS	ENST00000493161	ENST00000400519		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-3CDS	ENST00000493161	ENST00000535882		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-3CDS	ENST00000493161	ENST00000334363		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-3CDS	ENST00000493161	ENST00000400518		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-3CDS	ENST00000493161	ENST00000542719		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
3UTR-5UTR	ENST00000493161	ENST00000491939		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-3CDS	ENST00000396202	ENST00000400521		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-3CDS	ENST00000396202	ENST00000400519		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-3CDS	ENST00000396202	ENST00000535882		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-3CDS	ENST00000396202	ENST00000334363		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-3CDS	ENST00000396202	ENST00000400518		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-3CDS	ENST00000396202	ENST00000542719		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
5UTR-5UTR	ENST00000396202	ENST00000491939		TCGA	RV	KIRP	TCGA-BQ-7056-01A	SAMM50	chr22	44351478	+	TXNRD2	chr22	19918621	-
Frame-shit	ENST00000243563	ENST00000600132		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
Frame-shit	ENST00000243563	ENST00000318934		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
5CDS-intron	ENST00000243563	ENST00000262970		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
5CDS-intron	ENST00000243563	ENST00000595096		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
3UTR-3CDS	ENST00000599570	ENST00000600132		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
3UTR-3CDS	ENST00000599570	ENST00000318934		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
3UTR-intron	ENST00000599570	ENST00000262970		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
3UTR-intron	ENST00000599570	ENST00000595096		TCGA	RV	KIRP	TCGA-B9-A44B-01A	SNRPA	chr19	41257386	+	ANKRD24	chr19	4199680	+
intron-5UTR	ENST00000230323	ENST00000244728		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000230323	ENST00000370819		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000230323	ENST00000535941		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000230323	ENST00000370808		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000230323	ENST00000467045		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000358871	ENST00000244728		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000358871	ENST00000370819		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000358871	ENST00000535941		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000358871	ENST00000370808		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000358871	ENST00000467045		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000420312	ENST00000244728		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000420312	ENST00000370819		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000420312	ENST00000535941		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000420312	ENST00000370808		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000420312	ENST00000467045		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000403298	ENST00000244728		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000403298	ENST00000370819		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000403298	ENST00000535941		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000403298	ENST00000370808		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000403298	ENST00000467045		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
5UTR-5UTR	ENST00000373033	ENST00000244728		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
5UTR-5UTR	ENST00000373033	ENST00000370819		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
5UTR-5UTR	ENST00000373033	ENST00000535941		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
5UTR-intron	ENST00000373033	ENST00000370808		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
5UTR-intron	ENST00000373033	ENST00000467045		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000394283	ENST00000244728		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000394283	ENST00000370819		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-5UTR	ENST00000394283	ENST00000535941		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000394283	ENST00000370808		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
intron-intron	ENST00000394283	ENST00000467045		TCGA	RV	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703088	-	COL21A1	chr6	56047454	-
Frame-shit	ENST00000426333	ENST00000253408		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000426333	ENST00000588735		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000426333	ENST00000435360		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000426333	ENST00000586793		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000426333	ENST00000591327		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
Frame-shit	ENST00000592576	ENST00000253408		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000592576	ENST00000588735		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000592576	ENST00000435360		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000592576	ENST00000586793		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000592576	ENST00000591327		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
In-frame	ENST00000591382	ENST00000253408		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000591382	ENST00000588735		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000591382	ENST00000435360		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000591382	ENST00000586793		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000591382	ENST00000591327		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
In-frame	ENST00000402521	ENST00000253408		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000402521	ENST00000588735		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000402521	ENST00000435360		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000402521	ENST00000586793		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
5CDS-intron	ENST00000402521	ENST00000591327		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
intron-3CDS	ENST00000589211	ENST00000253408		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
intron-intron	ENST00000589211	ENST00000588735		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
intron-intron	ENST00000589211	ENST00000435360		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
intron-intron	ENST00000589211	ENST00000586793		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
intron-intron	ENST00000589211	ENST00000591327		TCGA	RV	KIRP	TCGA-GL-A9DE-01A	EFTUD2	chr17	42953302	-	GFAP	chr17	42991456	-
intron-intron	ENST00000415930	ENST00000367545		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000415930	ENST00000367526		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000415930	ENST00000480333		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000356487	ENST00000367545		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000356487	ENST00000367526		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000356487	ENST00000480333		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000586425	ENST00000367545		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000586425	ENST00000367526		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
intron-intron	ENST00000586425	ENST00000480333		TCGA	RV	KIRP	TCGA-GL-6846-01A	GPI	chr19	34893318	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000354725	ENST00000356239		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
Frame-shit	ENST00000354725	ENST00000358100		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
Frame-shit	ENST00000354725	ENST00000359028		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
5CDS-intron	ENST00000354725	ENST00000394564		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
5CDS-intron	ENST00000354725	ENST00000491695		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
intron-3CDS	ENST00000467238	ENST00000356239		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
intron-3CDS	ENST00000467238	ENST00000358100		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
intron-3CDS	ENST00000467238	ENST00000359028		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
intron-intron	ENST00000467238	ENST00000394564		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
intron-intron	ENST00000467238	ENST00000491695		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SND1	chr7	127447627	+	AKAP9	chr7	91734992	+
intron-3UTR	ENST00000434271	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000434271	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434271	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000353047	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000353047	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000353047	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000530640	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000530640	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000530640	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000531089	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000531089	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000531089	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000453527	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000453527	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000453527	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000415599	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000415599	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415599	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000345125	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000345125	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000345125	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000533455	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000533455	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000533455	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000534510	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000534510	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000534510	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000525076	ENST00000318789		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000525076	ENST00000475937		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000493089		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000484350		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000318779		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000491238		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000498215		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000468577		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000525076	ENST00000472382		TCGA	RV	KIRP	TCGA-BQ-5884-01A	CTSB	chr8	11701829	-	FOXP1	chr3	71007472	-
Frame-shit	ENST00000395811	ENST00000539941		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000395811	ENST00000268717		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
In-frame	ENST00000395811	ENST00000439936		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000444976	ENST00000539941		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000444976	ENST00000268717		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
In-frame	ENST00000444976	ENST00000439936		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000395804	ENST00000539941		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000395804	ENST00000268717		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
In-frame	ENST00000395804	ENST00000439936		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000341712	ENST00000539941		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000341712	ENST00000268717		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
In-frame	ENST00000341712	ENST00000439936		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
intron-3CDS	ENST00000395806	ENST00000539941		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
intron-3CDS	ENST00000395806	ENST00000268717		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
intron-3CDS	ENST00000395806	ENST00000439936		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
3UTR-3CDS	ENST00000395807	ENST00000539941		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
3UTR-3CDS	ENST00000395807	ENST00000268717		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
3UTR-3CDS	ENST00000395807	ENST00000439936		TCGA	RV	KIRP	TCGA-HE-A5NK-01A	MPRIP	chr17	16981390	+	COPS3	chr17	17150465	-
Frame-shit	ENST00000280527	ENST00000294973		TCGA	RV	KIRP	TCGA-G7-6792-01A	CRIM1	chr2	36726490	+	HAAO	chr2	42997722	-
intron-3CDS	ENST00000473403	ENST00000294973		TCGA	RV	KIRP	TCGA-G7-6792-01A	CRIM1	chr2	36726490	+	HAAO	chr2	42997722	-
In-frame	ENST00000318522	ENST00000389048		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000431873		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000498037		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
In-frame	ENST00000402711	ENST00000389048		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000431873		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000498037		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
Frame-shit	ENST00000482660	ENST00000389048		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000482660	ENST00000431873		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000482660	ENST00000498037		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000453191	ENST00000389048		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000431873		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000498037		TCGA	RV	KIRP	TCGA-2Z-A9JJ-01A	EML4	chr2	42472827	+	ALK	chr2	29446394	-
In-frame	ENST00000579585	ENST00000259008		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000579585	ENST00000577598		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
5CDS-intron	ENST00000579585	ENST00000583837		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000584573	ENST00000259008		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000584573	ENST00000577598		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
5CDS-intron	ENST00000584573	ENST00000583837		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000361733	ENST00000259008		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000361733	ENST00000577598		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
5CDS-intron	ENST00000361733	ENST00000583837		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000361357	ENST00000259008		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000361357	ENST00000577598		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
5CDS-intron	ENST00000361357	ENST00000583837		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000577395	ENST00000259008		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
In-frame	ENST00000577395	ENST00000577598		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
5CDS-intron	ENST00000577395	ENST00000583837		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
intron-3CDS	ENST00000577784	ENST00000259008		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
intron-3CDS	ENST00000577784	ENST00000577598		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
intron-intron	ENST00000577784	ENST00000583837		TCGA	RV	KIRP	TCGA-2Z-A9JI-01A	MAP3K3	chr17	61744420	+	BRIP1	chr17	59763526	-
intron-5UTR	ENST00000571102	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
intron-5UTR	ENST00000571102	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
intron-5UTR	ENST00000571102	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000431515	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000431515	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000431515	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000440027	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000440027	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000440027	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000262300	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000262300	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000262300	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000574385	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000574385	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000574385	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000574730	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000574730	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000574730	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000573944	ENST00000396925		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000573944	ENST00000328796		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5CDS-5UTR	ENST00000573944	ENST00000572154		TCGA	RV	KIRP	TCGA-BQ-5890-01A	PKMYT1	chr16	3026665	-	CLDN6	chr16	3066043	-
5UTR-intron	ENST00000169298	ENST00000448637		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000169298	ENST00000312675		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000169298	ENST00000543006		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000169298	ENST00000471917		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000457772	ENST00000448637		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000457772	ENST00000312675		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000457772	ENST00000543006		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
5UTR-intron	ENST00000457772	ENST00000471917		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000448044	ENST00000448637		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000448044	ENST00000312675		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000448044	ENST00000543006		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000448044	ENST00000471917		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000487031	ENST00000448637		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000487031	ENST00000312675		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000487031	ENST00000543006		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
intron-intron	ENST00000487031	ENST00000471917		TCGA	RV	KIRP	TCGA-DZ-6131-01A	ST6GAL1	chr3	186681714	+	LPP	chr3	188583988	+
In-frame	ENST00000328736	ENST00000345383		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-5UTR	ENST00000328736	ENST00000536576		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-5UTR	ENST00000328736	ENST00000346301		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-5UTR	ENST00000328736	ENST00000338104		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000328736	ENST00000354441		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000328736	ENST00000380656		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000328736	ENST00000358622		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
Frame-shit	ENST00000556564	ENST00000345383		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-5UTR	ENST00000556564	ENST00000536576		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-5UTR	ENST00000556564	ENST00000346301		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-5UTR	ENST00000556564	ENST00000338104		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000556564	ENST00000354441		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000556564	ENST00000380656		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000556564	ENST00000358622		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-3CDS	ENST00000554628	ENST00000345383		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-5UTR	ENST00000554628	ENST00000536576		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-5UTR	ENST00000554628	ENST00000346301		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-5UTR	ENST00000554628	ENST00000338104		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-intron	ENST00000554628	ENST00000354441		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-intron	ENST00000554628	ENST00000380656		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5UTR-intron	ENST00000554628	ENST00000358622		TCGA	RV	KIRP	TCGA-HE-7130-01A	PTPN21	chr14	89016582	-	TTC8	chr14	89305796	+
5CDS-intron	ENST00000368984	ENST00000313164		TCGA	RV	KIRP	TCGA-BQ-5889-01A	HTRA1	chr10	124274423	+	C7	chr5	40954982	+
5CDS-intron	ENST00000368984	ENST00000494960		TCGA	RV	KIRP	TCGA-BQ-5889-01A	HTRA1	chr10	124274423	+	C7	chr5	40954982	+
Frame-shit	ENST00000428084	ENST00000405709		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000428084	ENST00000331762		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000428084	ENST00000452895		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000428084	ENST00000415362		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000428084	ENST00000447215		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000428084	ENST00000437687		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000428084	ENST00000489381		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000428084	ENST00000450877		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000494651	ENST00000405709		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000494651	ENST00000331762		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000494651	ENST00000452895		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000494651	ENST00000415362		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000494651	ENST00000447215		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000494651	ENST00000437687		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000494651	ENST00000489381		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000494651	ENST00000450877		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000437633	ENST00000405709		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000437633	ENST00000331762		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000437633	ENST00000452895		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000437633	ENST00000415362		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000437633	ENST00000447215		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000437633	ENST00000437687		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000437633	ENST00000489381		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000437633	ENST00000450877		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000476846	ENST00000405709		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000476846	ENST00000331762		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000476846	ENST00000452895		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000476846	ENST00000415362		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000476846	ENST00000447215		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000476846	ENST00000437687		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-5UTR	ENST00000476846	ENST00000489381		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
5UTR-5UTR	ENST00000476846	ENST00000450877		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110603621	-
In-frame	ENST00000303127	ENST00000309007		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
In-frame	ENST00000303127	ENST00000292385		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
In-frame	ENST00000303127	ENST00000393565		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
5CDS-intron	ENST00000303127	ENST00000393563		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
5CDS-intron	ENST00000303127	ENST00000512501		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
In-frame	ENST00000515209	ENST00000309007		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
In-frame	ENST00000515209	ENST00000292385		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
In-frame	ENST00000515209	ENST00000393565		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
5CDS-intron	ENST00000515209	ENST00000393563		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
5CDS-intron	ENST00000515209	ENST00000512501		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
intron-3CDS	ENST00000506310	ENST00000309007		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
intron-3CDS	ENST00000506310	ENST00000292385		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
intron-3CDS	ENST00000506310	ENST00000393565		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
intron-intron	ENST00000506310	ENST00000393563		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
intron-intron	ENST00000506310	ENST00000512501		TCGA	RV	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176761285	-	DBN1	chr5	176895221	-
intron-3CDS	ENST00000399782	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
intron-intron	ENST00000399782	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-3CDS	ENST00000317582	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-intron	ENST00000317582	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-3CDS	ENST00000543133	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-intron	ENST00000543133	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-3CDS	ENST00000538149	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-intron	ENST00000538149	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-3CDS	ENST00000337612	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-intron	ENST00000337612	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-3CDS	ENST00000493680	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-intron	ENST00000493680	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-3CDS	ENST00000355028	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5UTR-intron	ENST00000355028	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
intron-3CDS	ENST00000418951	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
intron-intron	ENST00000418951	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
intron-3CDS	ENST00000485631	ENST00000216044		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
intron-intron	ENST00000485631	ENST00000460605		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	BCL2L13	chr22	18121652	+	GTPBP1	chr22	39126617	+
5CDS-intron	ENST00000388825	ENST00000233057		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000388825	ENST00000395127		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000388825	ENST00000405334		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000521722	ENST00000233057		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000521722	ENST00000395127		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000521722	ENST00000405334		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000517973	ENST00000233057		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000517973	ENST00000395127		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000517973	ENST00000405334		TCGA	RV	KIRP	TCGA-5P-A9KC-01A	GPX3	chr5	150408554	+	EIF2AK2	chr2	37342384	-
intron-3CDS	ENST00000462274	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
intron-intron	ENST00000462274	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000338785	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
5CDS-intron	ENST00000338785	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000451934	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
5CDS-intron	ENST00000451934	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000321219	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
5CDS-intron	ENST00000321219	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000339659	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
5CDS-intron	ENST00000339659	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000398960	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
5CDS-intron	ENST00000398960	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000398956	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
5CDS-intron	ENST00000398956	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
intron-3CDS	ENST00000455387	ENST00000270112		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
intron-intron	ENST00000455387	ENST00000465574		TCGA	RV	KIRP	TCGA-B9-A5W9-01A	DYRK1A	chr21	38792686	+	HUNK	chr21	33296780	+
Frame-shit	ENST00000328879	ENST00000405486		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000328879	ENST00000356244		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000328879	ENST00000455915		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000328879	ENST00000407260		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000440659	ENST00000405486		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000440659	ENST00000356244		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000440659	ENST00000455915		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
Frame-shit	ENST00000440659	ENST00000407260		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
intron-3CDS	ENST00000470335	ENST00000405486		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
intron-3CDS	ENST00000470335	ENST00000356244		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
intron-3CDS	ENST00000470335	ENST00000455915		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
intron-3CDS	ENST00000470335	ENST00000407260		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	KLHL22	chr22	20800730	-	RANGAP1	chr22	41652828	-
In-frame	ENST00000359337	ENST00000404260		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
In-frame	ENST00000359337	ENST00000403625		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
In-frame	ENST00000359337	ENST00000406374		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
In-frame	ENST00000359337	ENST00000406039		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000359337	ENST00000478569		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000359337	ENST00000490016		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000359337	ENST00000403666		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000359337	ENST00000405643		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000359337	ENST00000261569		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000359337	ENST00000407621		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
Frame-shit	ENST00000449103	ENST00000404260		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
Frame-shit	ENST00000449103	ENST00000403625		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
Frame-shit	ENST00000449103	ENST00000406374		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
Frame-shit	ENST00000449103	ENST00000406039		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000449103	ENST00000478569		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000449103	ENST00000490016		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000449103	ENST00000403666		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000449103	ENST00000405643		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000449103	ENST00000261569		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5CDS-intron	ENST00000449103	ENST00000407621		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-3CDS	ENST00000496720	ENST00000404260		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-3CDS	ENST00000496720	ENST00000403625		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-3CDS	ENST00000496720	ENST00000406374		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-3CDS	ENST00000496720	ENST00000406039		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-intron	ENST00000496720	ENST00000478569		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-intron	ENST00000496720	ENST00000490016		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-intron	ENST00000496720	ENST00000403666		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-intron	ENST00000496720	ENST00000405643		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-intron	ENST00000496720	ENST00000261569		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
5UTR-intron	ENST00000496720	ENST00000407621		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PLXNB2	chr22	50722031	-	MAST4	chr5	66195779	+
intron-3CDS	ENST00000607252	ENST00000244728		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
intron-3CDS	ENST00000607252	ENST00000370819		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
intron-3CDS	ENST00000607252	ENST00000535941		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
intron-intron	ENST00000607252	ENST00000370808		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
intron-intron	ENST00000607252	ENST00000467045		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
In-frame	ENST00000318149	ENST00000244728		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
In-frame	ENST00000318149	ENST00000370819		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
In-frame	ENST00000318149	ENST00000535941		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
5CDS-intron	ENST00000318149	ENST00000370808		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
5CDS-intron	ENST00000318149	ENST00000467045		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
In-frame	ENST00000361428	ENST00000244728		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
In-frame	ENST00000361428	ENST00000370819		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
In-frame	ENST00000361428	ENST00000535941		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
5CDS-intron	ENST00000361428	ENST00000370808		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
5CDS-intron	ENST00000361428	ENST00000467045		TCGA	RV	KIRP	TCGA-UZ-A9PQ-01A	ZNF318	chr6	43316062	-	COL21A1	chr6	55990947	-
3UTR-intron	ENST00000378565	ENST00000518164		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000521291		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000396070		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000287038		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
3UTR-intron	ENST00000378565	ENST00000523172		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000518164		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000521291		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000396070		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000287038		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000378549	ENST00000523172		TCGA	RV	KIRP	TCGA-HE-A5NH-01A	ITM2B	chr13	48835524	+	RPL30	chr8	99058697	-
Frame-shit	ENST00000393651	ENST00000358303		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000393651	ENST00000360708		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000393651	ENST00000311873		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000393651	ENST00000481503		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000357311	ENST00000358303		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000357311	ENST00000360708		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000357311	ENST00000311873		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000357311	ENST00000481503		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
In-frame	ENST00000489828	ENST00000358303		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
In-frame	ENST00000489828	ENST00000360708		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
In-frame	ENST00000489828	ENST00000311873		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
In-frame	ENST00000489828	ENST00000481503		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
intron-3CDS	ENST00000493638	ENST00000358303		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
intron-3CDS	ENST00000493638	ENST00000360708		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
intron-3CDS	ENST00000493638	ENST00000311873		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
intron-3CDS	ENST00000493638	ENST00000481503		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	ZC3HC1	chr7	129688984	-
5CDS-5UTR	ENST00000392329	ENST00000260983		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
5CDS-intron	ENST00000392329	ENST00000409111		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
5CDS-5UTR	ENST00000322522	ENST00000260983		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
5CDS-intron	ENST00000322522	ENST00000409111		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
5CDS-5UTR	ENST00000541441	ENST00000260983		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
5CDS-intron	ENST00000541441	ENST00000409111		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
3UTR-5UTR	ENST00000417336	ENST00000260983		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
3UTR-intron	ENST00000417336	ENST00000409111		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	INPP1	chr2	191225032	+	HECW2	chr2	197298182	-
Frame-shit	ENST00000361183	ENST00000397752		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000361183	ENST00000318493		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000361183	ENST00000436117		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
5CDS-3UTR	ENST00000361183	ENST00000495962		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
5CDS-intron	ENST00000361183	ENST00000539704		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000458284	ENST00000397752		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000458284	ENST00000318493		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000458284	ENST00000436117		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
5CDS-3UTR	ENST00000458284	ENST00000495962		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
5CDS-intron	ENST00000458284	ENST00000539704		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000490693	ENST00000397752		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000490693	ENST00000318493		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
Frame-shit	ENST00000490693	ENST00000436117		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
5CDS-3UTR	ENST00000490693	ENST00000495962		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
5CDS-intron	ENST00000490693	ENST00000539704		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
intron-3CDS	ENST00000466023	ENST00000397752		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
intron-3CDS	ENST00000466023	ENST00000318493		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
intron-3CDS	ENST00000466023	ENST00000436117		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
intron-3UTR	ENST00000466023	ENST00000495962		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
intron-intron	ENST00000466023	ENST00000539704		TCGA	RV	KIRP	TCGA-G7-6793-01A	CAPZA2	chr7	116528244	+	MET	chr7	116395409	+
In-frame	ENST00000409556	ENST00000280527		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
5CDS-intron	ENST00000409556	ENST00000473403		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
In-frame	ENST00000312912	ENST00000280527		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
5CDS-intron	ENST00000312912	ENST00000473403		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
In-frame	ENST00000409064	ENST00000280527		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
5CDS-intron	ENST00000409064	ENST00000473403		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
In-frame	ENST00000542128	ENST00000280527		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
5CDS-intron	ENST00000542128	ENST00000473403		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
intron-3CDS	ENST00000485171	ENST00000280527		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
intron-intron	ENST00000485171	ENST00000473403		TCGA	RV	KIRP	TCGA-G7-6792-01A	KDM3A	chr2	86691339	+	CRIM1	chr2	36691677	+
In-frame	ENST00000477593	ENST00000357599		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000477593	ENST00000195173		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000477593	ENST00000451055		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
5CDS-5UTR	ENST00000477593	ENST00000465147		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
intron-3CDS	ENST00000544716	ENST00000357599		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
intron-3CDS	ENST00000544716	ENST00000195173		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
intron-3CDS	ENST00000544716	ENST00000451055		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
intron-5UTR	ENST00000544716	ENST00000465147		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
Frame-shit	ENST00000289153	ENST00000357599		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
Frame-shit	ENST00000289153	ENST00000195173		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
Frame-shit	ENST00000289153	ENST00000451055		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
5CDS-5UTR	ENST00000289153	ENST00000465147		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138452203	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000446165	ENST00000397668		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
In-frame	ENST00000446165	ENST00000264827		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5CDS-intron	ENST00000446165	ENST00000589965		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
In-frame	ENST00000343325	ENST00000397668		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
In-frame	ENST00000343325	ENST00000264827		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5CDS-intron	ENST00000343325	ENST00000589965		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5UTR-3CDS	ENST00000458122	ENST00000397668		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5UTR-3CDS	ENST00000458122	ENST00000264827		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5UTR-intron	ENST00000458122	ENST00000589965		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5UTR-3CDS	ENST00000540038	ENST00000397668		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5UTR-3CDS	ENST00000540038	ENST00000264827		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
5UTR-intron	ENST00000540038	ENST00000589965		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
3UTR-3CDS	ENST00000498389	ENST00000397668		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
3UTR-3CDS	ENST00000498389	ENST00000264827		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
3UTR-intron	ENST00000498389	ENST00000589965		TCGA	RV	KIRP	TCGA-HE-7130-01A	ZNF791	chr19	12721896	+	HOOK2	chr19	12874592	-
In-frame	ENST00000296255	ENST00000318631		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
In-frame	ENST00000296255	ENST00000431348		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
5CDS-intron	ENST00000296255	ENST00000463801		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
5UTR-3CDS	ENST00000497289	ENST00000318631		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
5UTR-3CDS	ENST00000497289	ENST00000431348		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
5UTR-intron	ENST00000497289	ENST00000463801		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
intron-3CDS	ENST00000490166	ENST00000318631		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
intron-3CDS	ENST00000490166	ENST00000431348		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
intron-intron	ENST00000490166	ENST00000463801		TCGA	RV	KIRP	TCGA-G7-6793-01A	RPN1	chr3	128363762	-	MAP6D1	chr3	183535899	-
In-frame	ENST00000325411	ENST00000395555		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000325411	ENST00000494157		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000325411	ENST00000225740		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000325411	ENST00000444455		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000325411	ENST00000457500		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5CDS-intron	ENST00000325411	ENST00000485231		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5UTR-3CDS	ENST00000463318	ENST00000395555		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5UTR-3CDS	ENST00000463318	ENST00000494157		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5UTR-3CDS	ENST00000463318	ENST00000225740		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5UTR-3CDS	ENST00000463318	ENST00000444455		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5UTR-3CDS	ENST00000463318	ENST00000457500		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5UTR-intron	ENST00000463318	ENST00000485231		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000350657	ENST00000395555		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000350657	ENST00000494157		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000350657	ENST00000225740		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000350657	ENST00000444455		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
In-frame	ENST00000350657	ENST00000457500		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
5CDS-intron	ENST00000350657	ENST00000485231		TCGA	RV	KIRP	TCGA-GL-A4EM-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19645525	-
intron-3CDS	ENST00000306320	ENST00000310581		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000306320	ENST00000296820		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000306320	ENST00000334602		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000306320	ENST00000508104		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-intron	ENST00000306320	ENST00000522877		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
Frame-shit	ENST00000399793	ENST00000310581		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
In-frame	ENST00000399793	ENST00000296820		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
Frame-shit	ENST00000399793	ENST00000334602		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
Frame-shit	ENST00000399793	ENST00000508104		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000399793	ENST00000522877		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000509048	ENST00000310581		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000509048	ENST00000296820		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000509048	ENST00000334602		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000509048	ENST00000508104		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
intron-intron	ENST00000509048	ENST00000522877		TCGA	RV	KIRP	TCGA-UZ-A9PN-01A	FAM134B	chr5	16508687	-	TERT	chr5	1282739	-
Frame-shit	ENST00000338110	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000338110	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000338110	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000395248	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000395248	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000395248	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000575627	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000575627	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000575627	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
In-frame	ENST00000566897	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000566897	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000566897	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000569545	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569545	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569545	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000563060	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000563060	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000563060	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000412304	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000412304	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000412304	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000564546	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000564546	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000564546	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000564595	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000564595	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000564595	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000569798	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569798	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569798	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000395240	ENST00000263593		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000395240	ENST00000545756		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000395240	ENST00000525730		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
In-frame	ENST00000005340	ENST00000315869		TCGA	RV	KIRP	TCGA-J7-8537-01A	DVL2	chr17	7133127	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000005340	ENST00000487451		TCGA	RV	KIRP	TCGA-J7-8537-01A	DVL2	chr17	7133127	-	TFE3	chrX	48896935	-
In-frame	ENST00000575458	ENST00000315869		TCGA	RV	KIRP	TCGA-J7-8537-01A	DVL2	chr17	7133127	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000575458	ENST00000487451		TCGA	RV	KIRP	TCGA-J7-8537-01A	DVL2	chr17	7133127	-	TFE3	chrX	48896935	-
5UTR-3CDS	ENST00000574642	ENST00000315869		TCGA	RV	KIRP	TCGA-J7-8537-01A	DVL2	chr17	7133127	-	TFE3	chrX	48896935	-
5UTR-intron	ENST00000574642	ENST00000487451		TCGA	RV	KIRP	TCGA-J7-8537-01A	DVL2	chr17	7133127	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000357599	ENST00000457734		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000357599	ENST00000337777		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000357599	ENST00000497002		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000195173	ENST00000457734		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000195173	ENST00000337777		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000195173	ENST00000497002		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000451055	ENST00000457734		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000451055	ENST00000337777		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
Frame-shit	ENST00000451055	ENST00000497002		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
5UTR-3CDS	ENST00000465147	ENST00000457734		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
5UTR-3CDS	ENST00000465147	ENST00000337777		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
5UTR-3CDS	ENST00000465147	ENST00000497002		TCGA	RV	KIRP	TCGA-G7-6793-01A	SEMA5B	chr3	122667353	-	PLS1	chr3	142422710	+
In-frame	ENST00000315869	ENST00000271526		TCGA	RV	KIRP	TCGA-BQ-5887-01A	TFE3	chrX	48896632	-	PRCC	chr1	156756400	+
In-frame	ENST00000315869	ENST00000353233		TCGA	RV	KIRP	TCGA-BQ-5887-01A	TFE3	chrX	48896632	-	PRCC	chr1	156756400	+
5CDS-3UTR	ENST00000315869	ENST00000491853		TCGA	RV	KIRP	TCGA-BQ-5887-01A	TFE3	chrX	48896632	-	PRCC	chr1	156756400	+
5UTR-3CDS	ENST00000487451	ENST00000271526		TCGA	RV	KIRP	TCGA-BQ-5887-01A	TFE3	chrX	48896632	-	PRCC	chr1	156756400	+
5UTR-3CDS	ENST00000487451	ENST00000353233		TCGA	RV	KIRP	TCGA-BQ-5887-01A	TFE3	chrX	48896632	-	PRCC	chr1	156756400	+
5UTR-3UTR	ENST00000487451	ENST00000491853		TCGA	RV	KIRP	TCGA-BQ-5887-01A	TFE3	chrX	48896632	-	PRCC	chr1	156756400	+
intron-intron	ENST00000249330	ENST00000513761		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000249330	ENST00000347613		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000249330	ENST00000360642		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000249330	ENST00000504131		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000249330	ENST00000506924		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000445482	ENST00000513761		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000445482	ENST00000347613		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000445482	ENST00000360642		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000445482	ENST00000504131		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000445482	ENST00000506924		TCGA	RV	KIRP	TCGA-BQ-5875-01A	VGF	chr7	100805797	-	CLCN3	chr4	170623929	+
In-frame	ENST00000271526	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-5887-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-5UTR	ENST00000271526	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-5887-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
In-frame	ENST00000353233	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-5887-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-5UTR	ENST00000353233	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-5887-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
intron-3CDS	ENST00000491853	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-5887-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
intron-5UTR	ENST00000491853	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-5887-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5UTR-5UTR	ENST00000418530	ENST00000399161		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000418530	ENST00000428368		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000418530	ENST00000407844		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000418530	ENST00000471668		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000256707	ENST00000399161		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000256707	ENST00000428368		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000256707	ENST00000407844		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000256707	ENST00000471668		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000427284	ENST00000399161		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000427284	ENST00000428368		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000427284	ENST00000407844		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000427284	ENST00000471668		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-5UTR	ENST00000473731	ENST00000399161		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-5UTR	ENST00000473731	ENST00000428368		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-intron	ENST00000473731	ENST00000407844		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-intron	ENST00000473731	ENST00000471668		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000319688	ENST00000399161		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-5UTR	ENST00000319688	ENST00000428368		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000319688	ENST00000407844		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
5UTR-intron	ENST00000319688	ENST00000471668		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-5UTR	ENST00000436566	ENST00000399161		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-5UTR	ENST00000436566	ENST00000428368		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-intron	ENST00000436566	ENST00000407844		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
intron-intron	ENST00000436566	ENST00000471668		TCGA	RV	KIRP	TCGA-G7-6792-01A	KIDINS220	chr2	8977610	-	MYT1L	chr2	2288275	-
Frame-shit	ENST00000315869	ENST00000005340		TCGA	RV	KIRP	TCGA-J7-8537-01A	TFE3	chrX	48897982	-	DVL2	chr17	7132766	-
Frame-shit	ENST00000315869	ENST00000575458		TCGA	RV	KIRP	TCGA-J7-8537-01A	TFE3	chrX	48897982	-	DVL2	chr17	7132766	-
5CDS-5UTR	ENST00000315869	ENST00000574642		TCGA	RV	KIRP	TCGA-J7-8537-01A	TFE3	chrX	48897982	-	DVL2	chr17	7132766	-
intron-3CDS	ENST00000487451	ENST00000005340		TCGA	RV	KIRP	TCGA-J7-8537-01A	TFE3	chrX	48897982	-	DVL2	chr17	7132766	-
intron-3CDS	ENST00000487451	ENST00000575458		TCGA	RV	KIRP	TCGA-J7-8537-01A	TFE3	chrX	48897982	-	DVL2	chr17	7132766	-
intron-5UTR	ENST00000487451	ENST00000574642		TCGA	RV	KIRP	TCGA-J7-8537-01A	TFE3	chrX	48897982	-	DVL2	chr17	7132766	-
In-frame	ENST00000263094	ENST00000264828		TCGA	RV	KIRP	TCGA-B9-A44B-01A	ABCA7	chr19	1059084	+	COL5A3	chr19	10114821	-
In-frame	ENST00000433129	ENST00000264828		TCGA	RV	KIRP	TCGA-B9-A44B-01A	ABCA7	chr19	1059084	+	COL5A3	chr19	10114821	-
In-frame	ENST00000435683	ENST00000264828		TCGA	RV	KIRP	TCGA-B9-A44B-01A	ABCA7	chr19	1059084	+	COL5A3	chr19	10114821	-
intron-3CDS	ENST00000533574	ENST00000264828		TCGA	RV	KIRP	TCGA-B9-A44B-01A	ABCA7	chr19	1059084	+	COL5A3	chr19	10114821	-
In-frame	ENST00000242810	ENST00000323116		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000242810	ENST00000493826		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000242810	ENST00000482794		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
In-frame	ENST00000454652	ENST00000323116		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000454652	ENST00000493826		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000454652	ENST00000482794		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
Frame-shit	ENST00000476808	ENST00000323116		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000476808	ENST00000493826		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000476808	ENST00000482794		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
intron-3CDS	ENST00000461813	ENST00000323116		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
intron-intron	ENST00000461813	ENST00000493826		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
intron-intron	ENST00000461813	ENST00000482794		TCGA	RV	KIRP	TCGA-G7-6793-01A	KLHL24	chr3	183390272	+	ATP11B	chr3	182631649	+
Frame-shit	ENST00000325722	ENST00000322244		TCGA	RV	KIRP	TCGA-J7-8537-01A	KIAA0319L	chr1	35972213	-	UBA6	chr4	68534392	-
Frame-shit	ENST00000325722	ENST00000420827		TCGA	RV	KIRP	TCGA-J7-8537-01A	KIAA0319L	chr1	35972213	-	UBA6	chr4	68534392	-
intron-3CDS	ENST00000373266	ENST00000322244		TCGA	RV	KIRP	TCGA-J7-8537-01A	KIAA0319L	chr1	35972213	-	UBA6	chr4	68534392	-
intron-3CDS	ENST00000373266	ENST00000420827		TCGA	RV	KIRP	TCGA-J7-8537-01A	KIAA0319L	chr1	35972213	-	UBA6	chr4	68534392	-
intron-3CDS	ENST00000485551	ENST00000322244		TCGA	RV	KIRP	TCGA-J7-8537-01A	KIAA0319L	chr1	35972213	-	UBA6	chr4	68534392	-
intron-3CDS	ENST00000485551	ENST00000420827		TCGA	RV	KIRP	TCGA-J7-8537-01A	KIAA0319L	chr1	35972213	-	UBA6	chr4	68534392	-
Frame-shit	ENST00000535741	ENST00000262570		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
Frame-shit	ENST00000535741	ENST00000448878		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5CDS-5UTR	ENST00000535741	ENST00000476546		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5CDS-intron	ENST00000535741	ENST00000542753		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
Frame-shit	ENST00000510413	ENST00000262570		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
Frame-shit	ENST00000510413	ENST00000448878		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5CDS-5UTR	ENST00000510413	ENST00000476546		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5CDS-intron	ENST00000510413	ENST00000542753		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5UTR-3CDS	ENST00000503716	ENST00000262570		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5UTR-3CDS	ENST00000503716	ENST00000448878		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5UTR-5UTR	ENST00000503716	ENST00000476546		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5UTR-intron	ENST00000503716	ENST00000542753		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
Frame-shit	ENST00000357115	ENST00000262570		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
Frame-shit	ENST00000357115	ENST00000448878		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5CDS-5UTR	ENST00000357115	ENST00000476546		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5CDS-intron	ENST00000357115	ENST00000542753		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
intron-3CDS	ENST00000507224	ENST00000262570		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
intron-3CDS	ENST00000507224	ENST00000448878		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
intron-5UTR	ENST00000507224	ENST00000476546		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
intron-intron	ENST00000507224	ENST00000542753		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	LRBA	chr4	151199005	-	CHCHD3	chr7	132481338	-
5UTR-3CDS	ENST00000349945	ENST00000373381		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000349945	ENST00000373380		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000349945	ENST00000373377		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000349945	ENST00000373388		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000349945	ENST00000489419		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000349945	ENST00000338325		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
In-frame	ENST00000432919	ENST00000373381		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000432919	ENST00000373380		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000432919	ENST00000373377		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000432919	ENST00000373388		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000432919	ENST00000489419		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000432919	ENST00000338325		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
In-frame	ENST00000354436	ENST00000373381		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000354436	ENST00000373380		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000354436	ENST00000373377		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000354436	ENST00000373388		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000354436	ENST00000489419		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000354436	ENST00000338325		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
In-frame	ENST00000567239	ENST00000373381		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000567239	ENST00000373380		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000567239	ENST00000373377		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000567239	ENST00000373388		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000567239	ENST00000489419		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5CDS-intron	ENST00000567239	ENST00000338325		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-3CDS	ENST00000393742	ENST00000373381		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000393742	ENST00000373380		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000393742	ENST00000373377		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000393742	ENST00000373388		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000393742	ENST00000489419		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000393742	ENST00000338325		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-3CDS	ENST00000566899	ENST00000373381		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000566899	ENST00000373380		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000566899	ENST00000373377		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000566899	ENST00000373388		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000566899	ENST00000489419		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
5UTR-intron	ENST00000566899	ENST00000338325		TCGA	RV	KIRP	TCGA-SX-A71S-01A	NFAT5	chr16	69600277	+	CSMD2	chr1	34015950	-
In-frame	ENST00000377604	ENST00000315869		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
5CDS-5UTR	ENST00000377604	ENST00000487451		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
In-frame	ENST00000329236	ENST00000315869		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
5CDS-5UTR	ENST00000329236	ENST00000487451		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
In-frame	ENST00000345781	ENST00000315869		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
5CDS-5UTR	ENST00000345781	ENST00000487451		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
intron-3CDS	ENST00000478410	ENST00000315869		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
intron-5UTR	ENST00000478410	ENST00000487451		TCGA	RV	KIRP	TCGA-DZ-6131-01A	RBM10	chrX	47041725	+	TFE3	chrX	48895639	-
In-frame	ENST00000200652	ENST00000253754		TCGA	RV	KIRP	TCGA-BQ-5891-01A	SLC22A4	chr5	131630702	+	PDLIM4	chr5	131598302	+
In-frame	ENST00000200652	ENST00000379018		TCGA	RV	KIRP	TCGA-BQ-5891-01A	SLC22A4	chr5	131630702	+	PDLIM4	chr5	131598302	+
5CDS-intron	ENST00000200652	ENST00000484620		TCGA	RV	KIRP	TCGA-BQ-5891-01A	SLC22A4	chr5	131630702	+	PDLIM4	chr5	131598302	+
intron-3CDS	ENST00000491257	ENST00000253754		TCGA	RV	KIRP	TCGA-BQ-5891-01A	SLC22A4	chr5	131630702	+	PDLIM4	chr5	131598302	+
intron-3CDS	ENST00000491257	ENST00000379018		TCGA	RV	KIRP	TCGA-BQ-5891-01A	SLC22A4	chr5	131630702	+	PDLIM4	chr5	131598302	+
intron-intron	ENST00000491257	ENST00000484620		TCGA	RV	KIRP	TCGA-BQ-5891-01A	SLC22A4	chr5	131630702	+	PDLIM4	chr5	131598302	+
Frame-shit	ENST00000338110	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000338110	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000338110	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000395248	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000395248	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000395248	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000575627	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000575627	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000575627	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
In-frame	ENST00000566897	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000566897	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000566897	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000569545	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569545	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569545	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000563060	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000563060	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000563060	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000412304	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000412304	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000412304	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-3CDS	ENST00000564546	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000564546	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
3UTR-intron	ENST00000564546	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000564595	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000564595	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000564595	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000569798	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569798	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000569798	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000395240	ENST00000263593		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000395240	ENST00000545756		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
intron-intron	ENST00000395240	ENST00000525730		TCGA	RV	KIRP	TCGA-A4-8515-01A	ALDOA	chr16	30081734	+	SIAE	chr11	124543777	-
In-frame	ENST00000360534	ENST00000543905		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
In-frame	ENST00000360534	ENST00000544863		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
In-frame	ENST00000360534	ENST00000282077		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
In-frame	ENST00000360534	ENST00000392571		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
In-frame	ENST00000360534	ENST00000410055		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
intron-3CDS	ENST00000491591	ENST00000543905		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
intron-3CDS	ENST00000491591	ENST00000544863		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
intron-3CDS	ENST00000491591	ENST00000282077		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
intron-3CDS	ENST00000491591	ENST00000392571		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
intron-3CDS	ENST00000491591	ENST00000410055		TCGA	RV	KIRP	TCGA-Q2-A5QZ-01A	DPP4	chr2	162902042	-	PDK1	chr2	173451006	+
5CDS-5UTR	ENST00000356239	ENST00000413658		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000356239	ENST00000424697		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000356239	ENST00000303915		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000356239	ENST00000299667		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000358100	ENST00000413658		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000358100	ENST00000424697		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000358100	ENST00000303915		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000358100	ENST00000299667		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000359028	ENST00000413658		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000359028	ENST00000424697		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000359028	ENST00000303915		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000359028	ENST00000299667		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000394564	ENST00000413658		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000394564	ENST00000424697		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000394564	ENST00000303915		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000394564	ENST00000299667		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
intron-5UTR	ENST00000491695	ENST00000413658		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
intron-5UTR	ENST00000491695	ENST00000424697		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
intron-5UTR	ENST00000491695	ENST00000303915		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
intron-5UTR	ENST00000491695	ENST00000299667		TCGA	RV	KIRP	TCGA-B9-4116-01A	AKAP9	chr7	91570461	+	ZNF3	chr7	99675056	-
5CDS-intron	ENST00000309311	ENST00000371917		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000309311	ENST00000493140		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000600720	ENST00000371917		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000600720	ENST00000493140		TCGA	RV	KIRP	TCGA-A4-A5Y1-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000312438	ENST00000312989		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
5CDS-5UTR	ENST00000312438	ENST00000532446		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
5CDS-5UTR	ENST00000312438	ENST00000376745		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
5CDS-intron	ENST00000312438	ENST00000358239		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-3CDS	ENST00000533438	ENST00000312989		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000533438	ENST00000532446		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000533438	ENST00000376745		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-intron	ENST00000533438	ENST00000358239		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-3CDS	ENST00000528474	ENST00000312989		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000528474	ENST00000532446		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000528474	ENST00000376745		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-intron	ENST00000528474	ENST00000358239		TCGA	RV	KIRP	TCGA-BQ-5890-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
In-frame	ENST00000263918	ENST00000389048		TCGA	RV	KIRP	TCGA-G7-6792-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000263918	ENST00000431873		TCGA	RV	KIRP	TCGA-G7-6792-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000263918	ENST00000498037		TCGA	RV	KIRP	TCGA-G7-6792-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
In-frame	ENST00000379213	ENST00000389048		TCGA	RV	KIRP	TCGA-G7-6792-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000379213	ENST00000431873		TCGA	RV	KIRP	TCGA-G7-6792-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000379213	ENST00000498037		TCGA	RV	KIRP	TCGA-G7-6792-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
In-frame	ENST00000539993	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000539993	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000539993	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000539993	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000539993	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000518698	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000518698	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000518698	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000518698	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000518698	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
3UTR-3CDS	ENST00000349492	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
3UTR-3CDS	ENST00000349492	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
3UTR-intron	ENST00000349492	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
3UTR-intron	ENST00000349492	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
3UTR-intron	ENST00000349492	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000523686	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000523686	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000523686	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000523686	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000523686	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000348340	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000348340	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000348340	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000348340	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000348340	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000337103	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000337103	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000337103	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000337103	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
5CDS-intron	ENST00000337103	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
intron-3CDS	ENST00000325233	ENST00000397752		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
intron-3CDS	ENST00000325233	ENST00000318493		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
intron-intron	ENST00000325233	ENST00000436117		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
intron-intron	ENST00000325233	ENST00000495962		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
intron-intron	ENST00000325233	ENST00000539704		TCGA	RV	KIRP	TCGA-GL-7773-01A	C8orf34	chr8	69351881	+	MET	chr7	116414935	+
In-frame	ENST00000271526	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-7050-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-5UTR	ENST00000271526	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-7050-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
In-frame	ENST00000353233	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-7050-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-5UTR	ENST00000353233	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-7050-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
intron-3CDS	ENST00000491853	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-7050-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
intron-5UTR	ENST00000491853	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-7050-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-intron	ENST00000496817	ENST00000372285		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000496817	ENST00000372276		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000496817	ENST00000489304		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000368719	ENST00000372285		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000368719	ENST00000372276		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000368719	ENST00000489304		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000368720	ENST00000372285		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000368720	ENST00000372276		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000368720	ENST00000489304		TCGA	RV	KIRP	TCGA-BQ-7049-01A	S100A6	chr1	153507075	-	CD40	chr20	44754189	+
5CDS-intron	ENST00000309955	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000309955	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000443227	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000443227	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000341222	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000341222	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000340870	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000340870	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000355558	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000355558	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000341582	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000341582	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000342795	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000342795	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000395148	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000395148	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000423241	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000423241	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
intron-intron	ENST00000490965	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
intron-intron	ENST00000490965	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000440180	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000440180	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000457277	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000457277	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000494258	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000494258	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000479953	ENST00000323064		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
5CDS-intron	ENST00000479953	ENST00000360131		TCGA	RV	KIRP	TCGA-A4-A5Y0-01A	CFLAR	chr2	201997857	+	AGBL5	chr2	27290362	+
In-frame	ENST00000397752	ENST00000539993		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
In-frame	ENST00000397752	ENST00000518698		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000397752	ENST00000349492		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000397752	ENST00000523686		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000397752	ENST00000348340		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000397752	ENST00000337103		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-intron	ENST00000397752	ENST00000325233		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
In-frame	ENST00000318493	ENST00000539993		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
In-frame	ENST00000318493	ENST00000518698		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000318493	ENST00000349492		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000318493	ENST00000523686		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000318493	ENST00000348340		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-3UTR	ENST00000318493	ENST00000337103		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-intron	ENST00000318493	ENST00000325233		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3CDS	ENST00000436117	ENST00000539993		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3CDS	ENST00000436117	ENST00000518698		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000436117	ENST00000349492		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000436117	ENST00000523686		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000436117	ENST00000348340		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000436117	ENST00000337103		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-intron	ENST00000436117	ENST00000325233		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3CDS	ENST00000495962	ENST00000539993		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3CDS	ENST00000495962	ENST00000518698		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000495962	ENST00000349492		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000495962	ENST00000523686		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000495962	ENST00000348340		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000495962	ENST00000337103		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-intron	ENST00000495962	ENST00000325233		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3CDS	ENST00000539704	ENST00000539993		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3CDS	ENST00000539704	ENST00000518698		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000539704	ENST00000349492		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000539704	ENST00000523686		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000539704	ENST00000348340		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-3UTR	ENST00000539704	ENST00000337103		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
intron-intron	ENST00000539704	ENST00000325233		TCGA	RV	KIRP	TCGA-GL-7773-01A	MET	chr7	116412043	+	C8orf34	chr8	69358564	+
5CDS-5UTR	ENST00000477593	ENST00000491820		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000477593	ENST00000467562		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000477593	ENST00000357759		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000477593	ENST00000467761		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000477593	ENST00000489514		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
intron-5UTR	ENST00000544716	ENST00000491820		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
intron-5UTR	ENST00000544716	ENST00000467562		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
intron-5UTR	ENST00000544716	ENST00000357759		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
intron-5UTR	ENST00000544716	ENST00000467761		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
intron-5UTR	ENST00000544716	ENST00000489514		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000289153	ENST00000491820		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000289153	ENST00000467562		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000289153	ENST00000357759		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000289153	ENST00000467761		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
5CDS-5UTR	ENST00000289153	ENST00000489514		TCGA	RV	KIRP	TCGA-G7-6793-01A	PIK3CB	chr3	138478015	-	HHLA2	chr3	108070635	+
In-frame	ENST00000221130	ENST00000602723		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000221130	ENST00000400186		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000221130	ENST00000520002		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000221130	ENST00000602557		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000221130	ENST00000537824		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000221130	ENST00000542608		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000221130	ENST00000539096		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000221130	ENST00000523387		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000414019	ENST00000602723		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000414019	ENST00000400186		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000414019	ENST00000520002		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000414019	ENST00000602557		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000414019	ENST00000537824		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000414019	ENST00000542608		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000414019	ENST00000539096		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000414019	ENST00000523387		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000546342	ENST00000602723		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000546342	ENST00000400186		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000546342	ENST00000520002		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000546342	ENST00000602557		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000546342	ENST00000537824		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000546342	ENST00000542608		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000546342	ENST00000539096		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000546342	ENST00000523387		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000537535	ENST00000602723		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000537535	ENST00000400186		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000537535	ENST00000520002		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000537535	ENST00000602557		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000537535	ENST00000537824		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000537535	ENST00000542608		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000537535	ENST00000539096		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000537535	ENST00000523387		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000541648	ENST00000602723		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000541648	ENST00000400186		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000541648	ENST00000520002		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000541648	ENST00000602557		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000541648	ENST00000537824		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000541648	ENST00000542608		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000541648	ENST00000539096		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
5CDS-intron	ENST00000541648	ENST00000523387		TCGA	RV	KIRP	TCGA-J7-8537-01A	GSR	chr8	30541605	-	CSMD1	chr8	2887035	-
In-frame	ENST00000271526	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-5882-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-5UTR	ENST00000271526	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-5882-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
In-frame	ENST00000353233	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-5882-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5CDS-5UTR	ENST00000353233	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-5882-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
intron-3CDS	ENST00000491853	ENST00000315869		TCGA	RV	KIRP	TCGA-BQ-5882-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
intron-5UTR	ENST00000491853	ENST00000487451		TCGA	RV	KIRP	TCGA-BQ-5882-01A	PRCC	chr1	156738031	+	TFE3	chrX	48895967	-
5UTR-3CDS	ENST00000397397	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397397	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000397397	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000397411	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000397411	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-intron	ENST00000397411	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397396	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397396	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000397396	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397408	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397408	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000397408	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397406	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397406	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000397406	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000409543	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000409543	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-intron	ENST00000409543	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000525201	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000525201	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000525201	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397404	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000397404	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000397404	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000346501	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-3CDS	ENST00000346501	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
5UTR-intron	ENST00000346501	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000409531	ENST00000319006		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000409531	ENST00000528097		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-intron	ENST00000409531	ENST00000532202		TCGA	RV	KIRP	TCGA-G7-A8LD-01A	TSPAN4	chr11	847300	+	TALDO1	chr11	755879	+
intron-intron	ENST00000535112	ENST00000438045		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
intron-intron	ENST00000535112	ENST00000248633		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
intron-intron	ENST00000535112	ENST00000428214		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
intron-intron	ENST00000535112	ENST00000541751		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000396076	ENST00000438045		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000396076	ENST00000248633		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000396076	ENST00000428214		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000396076	ENST00000541751		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000350669	ENST00000438045		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000350669	ENST00000248633		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000350669	ENST00000428214		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000350669	ENST00000541751		TCGA	RV	KIRP	TCGA-IA-A40Y-01A	LDHB	chr12	21788276	-	PEX1	chr7	92146729	-
In-frame	ENST00000315869	ENST00000271526		TCGA	RV	KIRP	TCGA-BQ-5882-01A	TFE3	chrX	48896632	-	PRCC	chr1	156752074	+
In-frame	ENST00000315869	ENST00000353233		TCGA	RV	KIRP	TCGA-BQ-5882-01A	TFE3	chrX	48896632	-	PRCC	chr1	156752074	+
5CDS-3UTR	ENST00000315869	ENST00000491853		TCGA	RV	KIRP	TCGA-BQ-5882-01A	TFE3	chrX	48896632	-	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000487451	ENST00000271526		TCGA	RV	KIRP	TCGA-BQ-5882-01A	TFE3	chrX	48896632	-	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000487451	ENST00000353233		TCGA	RV	KIRP	TCGA-BQ-5882-01A	TFE3	chrX	48896632	-	PRCC	chr1	156752074	+
5UTR-3UTR	ENST00000487451	ENST00000491853		TCGA	RV	KIRP	TCGA-BQ-5882-01A	TFE3	chrX	48896632	-	PRCC	chr1	156752074	+
Frame-shit	ENST00000313949	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000313949	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000313949	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000371098	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000371098	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000371098	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000371075	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371075	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371075	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000371100	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371100	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371100	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000371099	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000371099	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000371099	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000371102	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371102	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371102	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000464624	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000464624	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000464624	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000306120	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000306120	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000306120	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000371095	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371095	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371095	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000371085	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371085	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000371085	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000354359	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000354359	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000354359	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000265620	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000265620	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000265620	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000306090	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000306090	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000306090	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000371081	ENST00000308724		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000371081	ENST00000397120		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
intron-intron	ENST00000371081	ENST00000556277		TCGA	RV	KIRP	TCGA-DW-7836-01A	GNAS	chr20	57486247	+	AP1G2	chr14	24037279	-
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRP	TCGA-SX-A7SO-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
5CDS-intron	ENST00000357214	ENST00000487451		TCGA	RV	KIRP	TCGA-SX-A7SO-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRP	TCGA-SX-A7SO-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-intron	ENST00000468598	ENST00000487451		TCGA	RV	KIRP	TCGA-SX-A7SO-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-3CDS	ENST00000396000	ENST00000350028		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-intron	ENST00000396000	ENST00000493161		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-intron	ENST00000396000	ENST00000396202		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-3CDS	ENST00000262735	ENST00000350028		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-intron	ENST00000262735	ENST00000493161		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-intron	ENST00000262735	ENST00000396202		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
5UTR-3CDS	ENST00000407236	ENST00000350028		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
5UTR-intron	ENST00000407236	ENST00000493161		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
5UTR-intron	ENST00000407236	ENST00000396202		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
3UTR-3CDS	ENST00000481567	ENST00000350028		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
3UTR-intron	ENST00000481567	ENST00000493161		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
3UTR-intron	ENST00000481567	ENST00000396202		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
5UTR-3CDS	ENST00000402126	ENST00000350028		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
5UTR-intron	ENST00000402126	ENST00000493161		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
5UTR-intron	ENST00000402126	ENST00000396202		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-3CDS	ENST00000434345	ENST00000350028		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-intron	ENST00000434345	ENST00000493161		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
intron-intron	ENST00000434345	ENST00000396202		TCGA	RV	KIRP	TCGA-P4-A5EB-01A	PPARA	chr22	46572733	+	SAMM50	chr22	44384991	+
Frame-shit	ENST00000415807	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
5CDS-5UTR	ENST00000415807	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
Frame-shit	ENST00000336824	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
5CDS-5UTR	ENST00000336824	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
Frame-shit	ENST00000416957	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
5CDS-5UTR	ENST00000416957	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
Frame-shit	ENST00000392699	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
5CDS-5UTR	ENST00000392699	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
Frame-shit	ENST00000421757	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
5CDS-5UTR	ENST00000421757	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
Frame-shit	ENST00000423424	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
5CDS-5UTR	ENST00000423424	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
intron-3CDS	ENST00000476794	ENST00000264381		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
intron-5UTR	ENST00000476794	ENST00000540653		TCGA	RV	KIRP	TCGA-G7-6793-01A	FNDC3B	chr3	171851336	+	BCHE	chr3	165504099	-
intron-3CDS	ENST00000546296	ENST00000361005		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000546296	ENST00000342836		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000546296	ENST00000429677		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000546296	ENST00000379405		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
intron-intron	ENST00000546296	ENST00000495682		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000539925	ENST00000361005		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000539925	ENST00000342836		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000539925	ENST00000429677		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000539925	ENST00000379405		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
5CDS-intron	ENST00000539925	ENST00000495682		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000228918	ENST00000361005		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000228918	ENST00000342836		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000228918	ENST00000429677		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000228918	ENST00000379405		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
5CDS-intron	ENST00000228918	ENST00000495682		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
3UTR-3CDS	ENST00000543190	ENST00000361005		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
3UTR-3CDS	ENST00000543190	ENST00000342836		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
3UTR-3CDS	ENST00000543190	ENST00000429677		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
3UTR-3CDS	ENST00000543190	ENST00000379405		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
3UTR-intron	ENST00000543190	ENST00000495682		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000541102	ENST00000361005		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000541102	ENST00000342836		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000541102	ENST00000429677		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000541102	ENST00000379405		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
5CDS-intron	ENST00000541102	ENST00000495682		TCGA	RV	KIRP	TCGA-P4-AAVM-01A	LTBR	chr12	6495610	+	PRSS3	chr9	33796641	+
In-frame	ENST00000393651	ENST00000265717		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
5CDS-intron	ENST00000393651	ENST00000393613		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
In-frame	ENST00000357311	ENST00000265717		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
5CDS-intron	ENST00000357311	ENST00000393613		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
Frame-shit	ENST00000489828	ENST00000265717		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
5CDS-intron	ENST00000489828	ENST00000393613		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
intron-3CDS	ENST00000493638	ENST00000265717		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
intron-intron	ENST00000493638	ENST00000393613		TCGA	RV	KIRP	TCGA-5P-A9JZ-01A	SRPK2	chr7	104800954	-	PRKAR2B	chr7	106791367	+
In-frame	ENST00000357214	ENST00000315869		TCGA	RV	KIRP	TCGA-G7-7501-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
5CDS-intron	ENST00000357214	ENST00000487451		TCGA	RV	KIRP	TCGA-G7-7501-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-3CDS	ENST00000468598	ENST00000315869		TCGA	RV	KIRP	TCGA-G7-7501-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
intron-intron	ENST00000468598	ENST00000487451		TCGA	RV	KIRP	TCGA-G7-7501-01A	SFPQ	chr1	35654604	-	TFE3	chrX	48898095	-
In-frame	ENST00000277541	ENST00000225893		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
In-frame	ENST00000277541	ENST00000561193		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
In-frame	ENST00000277541	ENST00000560016		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
In-frame	ENST00000277541	ENST00000427275		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
intron-3CDS	ENST00000491649	ENST00000225893		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
intron-3CDS	ENST00000491649	ENST00000561193		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
intron-3CDS	ENST00000491649	ENST00000560016		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
intron-3CDS	ENST00000491649	ENST00000427275		TCGA	RV	KIRP	TCGA-BQ-7053-01A	NOTCH1	chr9	139397634	-	HNF1B	chr17	36093736	-
In-frame	ENST00000361822	ENST00000405709		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000361822	ENST00000331762		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000361822	ENST00000452895		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000361822	ENST00000415362		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000361822	ENST00000447215		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000361822	ENST00000437687		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000361822	ENST00000489381		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000361822	ENST00000450877		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000450657	ENST00000405709		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000450657	ENST00000331762		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000450657	ENST00000452895		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000450657	ENST00000415362		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000450657	ENST00000447215		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000450657	ENST00000437687		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000450657	ENST00000489381		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000450657	ENST00000450877		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000421043	ENST00000405709		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000421043	ENST00000331762		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000421043	ENST00000452895		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000421043	ENST00000415362		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000421043	ENST00000447215		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000421043	ENST00000437687		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000421043	ENST00000489381		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000421043	ENST00000450877		TCGA	RV	KIRP	TCGA-B9-4116-01A	ZNF277	chr7	111958328	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000252050	ENST00000287152		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000394362		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000373213		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000373216		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000229913		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000373215		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000538893		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000252050	ENST00000541946		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
5CDS-intron	ENST00000252050	ENST00000465719		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000287152		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000394362		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000373213		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000373216		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000229913		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000373215		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000538893		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000354495	ENST00000541946		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
5CDS-intron	ENST00000354495	ENST00000465719		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000287152		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000394362		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000373213		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000373216		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000229913		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000373215		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000538893		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000372647	ENST00000541946		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
5CDS-intron	ENST00000372647	ENST00000465719		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000287152		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000394362		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000373213		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000373216		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000229913		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000373215		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000538893		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-3CDS	ENST00000502937	ENST00000541946		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
intron-intron	ENST00000502937	ENST00000465719		TCGA	RV	KIRP	TCGA-B9-A69E-01A	CUL9	chr6	43156453	+	KIF6	chr6	39311591	-
In-frame	ENST00000225893	ENST00000277541		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
5CDS-intron	ENST00000225893	ENST00000491649		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
In-frame	ENST00000561193	ENST00000277541		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
5CDS-intron	ENST00000561193	ENST00000491649		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
In-frame	ENST00000560016	ENST00000277541		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
5CDS-intron	ENST00000560016	ENST00000491649		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
In-frame	ENST00000427275	ENST00000277541		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
5CDS-intron	ENST00000427275	ENST00000491649		TCGA	RV	KIRP	TCGA-BQ-7053-01A	HNF1B	chr17	36099431	-	NOTCH1	chr9	139396940	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	KIRP	TCGA-A4-7287-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5CDS-5UTR	ENST00000592782	ENST00000591513		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-3UTR	ENST00000592782	ENST00000590423		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-5UTR	ENST00000592782	ENST00000253410		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-5UTR	ENST00000592782	ENST00000587021		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-5UTR	ENST00000258960	ENST00000591513		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-3UTR	ENST00000258960	ENST00000590423		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-5UTR	ENST00000258960	ENST00000253410		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-5UTR	ENST00000258960	ENST00000587021		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
3UTR-5UTR	ENST00000590114	ENST00000591513		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
3UTR-3UTR	ENST00000590114	ENST00000590423		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
3UTR-5UTR	ENST00000590114	ENST00000253410		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
3UTR-5UTR	ENST00000590114	ENST00000587021		TCGA	LD	KIRP	TCGA-2Z-A9J3-01A	NMT1	chr17	43138828	+	HIGD1B	chr17	42925470	+
5CDS-intron	ENST00000424789	ENST00000333942		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000358365		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000583994		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000545287		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000354266		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000394692		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000581094		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000424789	ENST00000580976		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000333942		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000358365		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000583994		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000545287		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000354266		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000394692		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000581094		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000389520	ENST00000580976		TCGA	LD	KIRP	TCGA-2Z-A9JI-01A	TANC2	chr17	61345234	+	RHOT1	chr17	30580104	+
Frame-shit	ENST00000280285	ENST00000254691		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
In-frame	ENST00000280285	ENST00000381677		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
Frame-shit	ENST00000382142	ENST00000254691		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
In-frame	ENST00000382142	ENST00000381677		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
Frame-shit	ENST00000264934	ENST00000254691		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
In-frame	ENST00000264934	ENST00000381677		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
intron-3CDS	ENST00000510216	ENST00000254691		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
intron-3CDS	ENST00000510216	ENST00000381677		TCGA	LD	KIRP	TCGA-2Z-A9JJ-01A	MTMR12	chr5	32312864	-	CARD6	chr5	40841576	+
Frame-shit	ENST00000450554	ENST00000315869		TCGA	LD	KIRP	TCGA-2Z-A9JO-01A	U2AF2	chr19	56180988	+	TFE3	chrX	48898095	-
5CDS-intron	ENST00000450554	ENST00000487451		TCGA	LD	KIRP	TCGA-2Z-A9JO-01A	U2AF2	chr19	56180988	+	TFE3	chrX	48898095	-
Frame-shit	ENST00000308924	ENST00000315869		TCGA	LD	KIRP	TCGA-2Z-A9JO-01A	U2AF2	chr19	56180988	+	TFE3	chrX	48898095	-
5CDS-intron	ENST00000308924	ENST00000487451		TCGA	LD	KIRP	TCGA-2Z-A9JO-01A	U2AF2	chr19	56180988	+	TFE3	chrX	48898095	-
Frame-shit	ENST00000590551	ENST00000315869		TCGA	LD	KIRP	TCGA-2Z-A9JO-01A	U2AF2	chr19	56180988	+	TFE3	chrX	48898095	-
5CDS-intron	ENST00000590551	ENST00000487451		TCGA	LD	KIRP	TCGA-2Z-A9JO-01A	U2AF2	chr19	56180988	+	TFE3	chrX	48898095	-
intron-3CDS	ENST00000304239	ENST00000201586		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-3CDS	ENST00000304239	ENST00000323090		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-intron	ENST00000304239	ENST00000594274		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-3CDS	ENST00000337995	ENST00000201586		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-3CDS	ENST00000337995	ENST00000323090		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-intron	ENST00000337995	ENST00000594274		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-3CDS	ENST00000586540	ENST00000201586		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-3CDS	ENST00000586540	ENST00000323090		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
intron-intron	ENST00000586540	ENST00000594274		TCGA	LD	KIRP	TCGA-4A-A93Y-01A	ZNF420	chr19	37498984	+	SULT2B1	chr19	49079198	+
5CDS-intron	ENST00000370119	ENST00000542213		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000370119	ENST00000370125		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370119	ENST00000361544		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370119	ENST00000370124		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370119	ENST00000336454		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000370119	ENST00000544534		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370119	ENST00000469387		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000347652	ENST00000542213		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000347652	ENST00000370125		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000347652	ENST00000361544		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000347652	ENST00000370124		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000347652	ENST00000336454		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000347652	ENST00000544534		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000347652	ENST00000469387		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000294728	ENST00000542213		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000294728	ENST00000370125		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000294728	ENST00000361544		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000294728	ENST00000370124		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000294728	ENST00000336454		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000294728	ENST00000544534		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000294728	ENST00000469387		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370115	ENST00000542213		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000370115	ENST00000370125		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370115	ENST00000361544		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370115	ENST00000370124		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370115	ENST00000336454		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-3UTR	ENST00000370115	ENST00000544534		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-intron	ENST00000370115	ENST00000469387		TCGA	LD	KIRP	TCGA-5P-A9JU-01A	VCAM1	chr1	101200324	+	CDC14A	chr1	100983807	+
5CDS-5UTR	ENST00000072869	ENST00000265715		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000072869	ENST00000541474		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000072869	ENST00000544569		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000072869	ENST00000543100		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000072869	ENST00000480841		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-5UTR	ENST00000476491	ENST00000265715		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000476491	ENST00000541474		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000476491	ENST00000544569		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000476491	ENST00000543100		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000476491	ENST00000480841		TCGA	LD	KIRP	TCGA-5P-A9JZ-01A	ADCK2	chr7	140389525	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000396271	ENST00000376070		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000396271	ENST00000376087		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000396271	ENST00000436985		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000396271	ENST00000466890		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375901	ENST00000376070		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375901	ENST00000376087		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375901	ENST00000436985		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375901	ENST00000466890		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375905	ENST00000376070		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375905	ENST00000376087		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375905	ENST00000436985		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375905	ENST00000466890		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375897	ENST00000376070		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375897	ENST00000376087		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375897	ENST00000436985		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375897	ENST00000466890		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375888	ENST00000376070		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375888	ENST00000376087		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375888	ENST00000436985		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5CDS-intron	ENST00000375888	ENST00000466890		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5UTR-intron	ENST00000476758	ENST00000376070		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5UTR-intron	ENST00000476758	ENST00000376087		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5UTR-intron	ENST00000476758	ENST00000436985		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
5UTR-intron	ENST00000476758	ENST00000466890		TCGA	LD	KIRP	TCGA-5P-A9K9-01A	ACBD5	chr10	27520677	-	ANKRD26	chr10	27284076	-
Frame-shit	ENST00000397061	ENST00000444215		TCGA	LD	KIRP	TCGA-A4-7585-01A	NUDT19	chr19	33183580	+	TDRD12	chr19	33308995	+
5CDS-intron	ENST00000397061	ENST00000421545		TCGA	LD	KIRP	TCGA-A4-7585-01A	NUDT19	chr19	33183580	+	TDRD12	chr19	33308995	+
5UTR-3CDS	ENST00000474820	ENST00000283233		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5UTR-3CDS	ENST00000474820	ENST00000409187		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5UTR-3CDS	ENST00000474820	ENST00000536771		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5UTR-intron	ENST00000474820	ENST00000409889		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5UTR-intron	ENST00000474820	ENST00000491563		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000348849	ENST00000283233		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000348849	ENST00000409187		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000348849	ENST00000536771		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000348849	ENST00000409889		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000348849	ENST00000491563		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409075	ENST00000283233		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409075	ENST00000409187		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409075	ENST00000536771		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000409075	ENST00000409889		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000409075	ENST00000491563		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409289	ENST00000283233		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409289	ENST00000409187		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409289	ENST00000536771		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000409289	ENST00000409889		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000409289	ENST00000491563		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000392753	ENST00000283233		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000392753	ENST00000409187		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000392753	ENST00000536771		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000392753	ENST00000409889		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000392753	ENST00000491563		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409972	ENST00000283233		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409972	ENST00000409187		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
Frame-shit	ENST00000409972	ENST00000536771		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000409972	ENST00000409889		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
5CDS-intron	ENST00000409972	ENST00000491563		TCGA	LD	KIRP	TCGA-A4-7585-01A	RBMS1	chr2	161223727	-	CCDC148	chr2	159170406	-
intron-3CDS	ENST00000438125	ENST00000340652		TCGA	LD	KIRP	TCGA-A4-A4ZT-01A	TYW1B	chr7	72277659	-	VWC2	chr7	49951630	+
In-frame	ENST00000435769	ENST00000340652		TCGA	LD	KIRP	TCGA-A4-A4ZT-01A	TYW1B	chr7	72277659	-	VWC2	chr7	49951630	+
intron-3CDS	ENST00000343721	ENST00000340652		TCGA	LD	KIRP	TCGA-A4-A4ZT-01A	TYW1B	chr7	72277659	-	VWC2	chr7	49951630	+
In-frame	ENST00000438904	ENST00000340652		TCGA	LD	KIRP	TCGA-A4-A4ZT-01A	TYW1B	chr7	72277659	-	VWC2	chr7	49951630	+
5CDS-intron	ENST00000317907	ENST00000340556		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	MORN2	chr2	39146504	+
5CDS-intron	ENST00000317907	ENST00000410014		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	MORN2	chr2	39146504	+
5CDS-intron	ENST00000317907	ENST00000409665		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	MORN2	chr2	39146504	+
5CDS-intron	ENST00000317907	ENST00000409077		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	MORN2	chr2	39146504	+
5CDS-intron	ENST00000317907	ENST00000409131		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	TTC27	chr2	32859072	+	MORN2	chr2	39146504	+
5CDS-5UTR	ENST00000392415	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
5CDS-5UTR	ENST00000410062	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
5CDS-5UTR	ENST00000602710	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
intron-5UTR	ENST00000602837	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
5CDS-5UTR	ENST00000602959	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
5CDS-5UTR	ENST00000602475	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
5CDS-5UTR	ENST00000602632	ENST00000295324		TCGA	LD	KIRP	TCGA-A4-A5Y0-01A	UBE2E3	chr2	181848820	+	CDC42EP3	chr2	37873965	-
intron-3CDS	ENST00000487143	ENST00000272831		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
intron-3CDS	ENST00000487143	ENST00000389175		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
intron-intron	ENST00000487143	ENST00000472405		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
intron-intron	ENST00000487143	ENST00000423093		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
intron-intron	ENST00000487143	ENST00000409270		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
intron-intron	ENST00000487143	ENST00000487663		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
In-frame	ENST00000355999	ENST00000272831		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
In-frame	ENST00000355999	ENST00000389175		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
5CDS-intron	ENST00000355999	ENST00000472405		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
5CDS-intron	ENST00000355999	ENST00000423093		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
5CDS-intron	ENST00000355999	ENST00000409270		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
5CDS-intron	ENST00000355999	ENST00000487663		TCGA	LD	KIRP	TCGA-AL-3466-01A	STK39	chr2	168986051	-	CCDC150	chr2	197583227	+
intron-3CDS	ENST00000520309	ENST00000441310		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000520309	ENST00000418224		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000520309	ENST00000409823		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3UTR	ENST00000520309	ENST00000421722		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000520309	ENST00000447232		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000520309	ENST00000432292		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000520309	ENST00000409985		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000520309	ENST00000374826		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000313581	ENST00000441310		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000313581	ENST00000418224		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000313581	ENST00000409823		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3UTR	ENST00000313581	ENST00000421722		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000313581	ENST00000447232		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000313581	ENST00000432292		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000313581	ENST00000409985		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000313581	ENST00000374826		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000281412	ENST00000441310		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000281412	ENST00000418224		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000281412	ENST00000409823		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3UTR	ENST00000281412	ENST00000421722		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000281412	ENST00000447232		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000281412	ENST00000432292		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000281412	ENST00000409985		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000281412	ENST00000374826		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000438402	ENST00000441310		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000438402	ENST00000418224		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000438402	ENST00000409823		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3UTR	ENST00000438402	ENST00000421722		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000438402	ENST00000447232		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000438402	ENST00000432292		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000438402	ENST00000409985		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000438402	ENST00000374826		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000431575	ENST00000441310		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000431575	ENST00000418224		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000431575	ENST00000409823		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-3UTR	ENST00000431575	ENST00000421722		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000431575	ENST00000447232		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000431575	ENST00000432292		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000431575	ENST00000409985		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
intron-intron	ENST00000431575	ENST00000374826		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-3CDS	ENST00000461516	ENST00000441310		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-3CDS	ENST00000461516	ENST00000418224		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-3CDS	ENST00000461516	ENST00000409823		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-3UTR	ENST00000461516	ENST00000421722		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-intron	ENST00000461516	ENST00000447232		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-intron	ENST00000461516	ENST00000432292		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-intron	ENST00000461516	ENST00000409985		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
3UTR-intron	ENST00000461516	ENST00000374826		TCGA	LD	KIRP	TCGA-B3-4104-01A	ANKAR	chr2	190539556	+	PMS1	chr2	190728469	+
5CDS-intron	ENST00000520408	ENST00000333942		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000358365		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000583994		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000545287		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000354266		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000394692		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000581094		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000520408	ENST00000580976		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000333942		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000358365		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000583994		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000545287		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000354266		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000394692		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000581094		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000310430	ENST00000580976		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000333942		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000358365		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000583994		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000545287		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000354266		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000394692		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000581094		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000518281	ENST00000580976		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000333942		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000358365		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000583994		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000545287		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000354266		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000394692		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000581094		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000522110	ENST00000580976		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000333942		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000358365		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000583994		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000545287		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000354266		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000394692		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000581094		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000518027	ENST00000580976		TCGA	LD	KIRP	TCGA-B9-4117-01A	TNKS	chr8	9538310	+	RHOT1	chr17	30580104	+
In-frame	ENST00000296657	ENST00000282516		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ANKRD33B	chr5	10564945	+	NIPBL	chr5	37058993	+
In-frame	ENST00000296657	ENST00000448238		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ANKRD33B	chr5	10564945	+	NIPBL	chr5	37058993	+
5CDS-intron	ENST00000296657	ENST00000504430		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ANKRD33B	chr5	10564945	+	NIPBL	chr5	37058993	+
intron-3CDS	ENST00000400099	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
5UTR-3CDS	ENST00000400094	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
5UTR-3CDS	ENST00000284971	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
intron-3CDS	ENST00000457143	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
intron-3CDS	ENST00000400090	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
intron-3CDS	ENST00000400087	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
intron-3CDS	ENST00000400093	ENST00000303230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	ATP5J	chr21	27107164	-	HCN1	chr5	45462109	-
Frame-shit	ENST00000333229	ENST00000401507		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000333229	ENST00000509663		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000333229	ENST00000381103		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000333229	ENST00000407818		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-5UTR	ENST00000333229	ENST00000506857		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
Frame-shit	ENST00000342449	ENST00000401507		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000342449	ENST00000509663		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000342449	ENST00000381103		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000342449	ENST00000407818		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-5UTR	ENST00000342449	ENST00000506857		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
Frame-shit	ENST00000380800	ENST00000401507		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000380800	ENST00000509663		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000380800	ENST00000381103		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000380800	ENST00000407818		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-5UTR	ENST00000380800	ENST00000506857		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
Frame-shit	ENST00000341322	ENST00000401507		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000341322	ENST00000509663		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000341322	ENST00000381103		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000341322	ENST00000407818		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-5UTR	ENST00000341322	ENST00000506857		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5UTR-3CDS	ENST00000470108	ENST00000401507		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5UTR-intron	ENST00000470108	ENST00000509663		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5UTR-intron	ENST00000470108	ENST00000381103		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5UTR-intron	ENST00000470108	ENST00000407818		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5UTR-5UTR	ENST00000470108	ENST00000506857		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	BRWD1	chr21	40684767	-	KIF2A	chr5	61642957	+
5CDS-intron	ENST00000300255	ENST00000468874		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
5CDS-intron	ENST00000300255	ENST00000542230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
5CDS-intron	ENST00000401402	ENST00000468874		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
5CDS-intron	ENST00000401402	ENST00000542230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
5CDS-intron	ENST00000382699	ENST00000468874		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
5CDS-intron	ENST00000382699	ENST00000542230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
intron-intron	ENST00000485488	ENST00000468874		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
intron-intron	ENST00000485488	ENST00000542230		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	EVA1C	chr21	33785321	+	TMEM50B	chr21	34805109	-
In-frame	ENST00000296603	ENST00000504830		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	LMBRD2	chr5	36108636	-	ADAMTS12	chr5	33751653	-
In-frame	ENST00000296603	ENST00000352040		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	LMBRD2	chr5	36108636	-	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000296603	ENST00000504582		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	LMBRD2	chr5	36108636	-	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000296603	ENST00000515401		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	LMBRD2	chr5	36108636	-	ADAMTS12	chr5	33751653	-
intron-3CDS	ENST00000471540	ENST00000567670		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
intron-intron	ENST00000471540	ENST00000468508		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
intron-intron	ENST00000471540	ENST00000311124		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
intron-intron	ENST00000471540	ENST00000380010		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
intron-intron	ENST00000471540	ENST00000485649		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
Frame-shit	ENST00000349485	ENST00000567670		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000349485	ENST00000468508		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000349485	ENST00000311124		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000349485	ENST00000380010		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000349485	ENST00000485649		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
Frame-shit	ENST00000331343	ENST00000567670		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000331343	ENST00000468508		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000331343	ENST00000311124		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000331343	ENST00000380010		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
5CDS-intron	ENST00000331343	ENST00000485649		TCGA	LD	KIRP	TCGA-B9-A5W9-01A	POFUT2	chr21	46705593	-	SLC19A1	chr21	46918526	-
Frame-shit	ENST00000230323	ENST00000383699		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000230323	ENST00000407528		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000230323	ENST00000405615		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
5CDS-intron	ENST00000230323	ENST00000485126		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000358871	ENST00000383699		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000358871	ENST00000407528		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000358871	ENST00000405615		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
5CDS-intron	ENST00000358871	ENST00000485126		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000420312	ENST00000383699		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000420312	ENST00000407528		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000420312	ENST00000405615		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
5CDS-intron	ENST00000420312	ENST00000485126		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000403298	ENST00000383699		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000403298	ENST00000407528		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000403298	ENST00000405615		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
5CDS-intron	ENST00000403298	ENST00000485126		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
In-frame	ENST00000373033	ENST00000383699		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
In-frame	ENST00000373033	ENST00000407528		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
In-frame	ENST00000373033	ENST00000405615		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
5CDS-intron	ENST00000373033	ENST00000485126		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000394283	ENST00000383699		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000394283	ENST00000407528		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000394283	ENST00000405615		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
intron-intron	ENST00000394283	ENST00000485126		TCGA	LD	KIRP	TCGA-B9-A69E-01A	TFEB	chr6	41653828	-	CADM2	chr3	85851197	+
In-frame	ENST00000245407	ENST00000378823		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
In-frame	ENST00000245407	ENST00000265335		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
5CDS-intron	ENST00000245407	ENST00000487596		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
In-frame	ENST00000435065	ENST00000378823		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
In-frame	ENST00000435065	ENST00000265335		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
5CDS-intron	ENST00000435065	ENST00000487596		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
intron-3CDS	ENST00000479605	ENST00000378823		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
intron-3CDS	ENST00000479605	ENST00000265335		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
intron-intron	ENST00000479605	ENST00000487596		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SLC22A5	chr5	131722843	+	RAD50	chr5	131976364	+
intron-3CDS	ENST00000237623	ENST00000316403		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000237623	ENST00000546343		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000237623	ENST00000560366		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000237623	ENST00000405140		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000237623	ENST00000523500		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000395080	ENST00000316403		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000395080	ENST00000546343		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000395080	ENST00000560366		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000395080	ENST00000405140		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000395080	ENST00000523500		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000360804	ENST00000316403		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000360804	ENST00000546343		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000360804	ENST00000560366		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000360804	ENST00000405140		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
In-frame	ENST00000360804	ENST00000523500		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
3UTR-3CDS	ENST00000509659	ENST00000316403		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
3UTR-3CDS	ENST00000509659	ENST00000546343		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
3UTR-3CDS	ENST00000509659	ENST00000560366		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
3UTR-3CDS	ENST00000509659	ENST00000405140		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
3UTR-3CDS	ENST00000509659	ENST00000523500		TCGA	LD	KIRP	TCGA-BQ-5876-01A	SPP1	chr4	88901586	+	CLU	chr8	27464041	-
5UTR-intron	ENST00000474820	ENST00000469595		TCGA	LD	KIRP	TCGA-BQ-5878-01A	RBMS1	chr2	161135059	-	AOX3P	chr2	201587701	+
5CDS-intron	ENST00000348849	ENST00000469595		TCGA	LD	KIRP	TCGA-BQ-5878-01A	RBMS1	chr2	161135059	-	AOX3P	chr2	201587701	+
5CDS-intron	ENST00000409075	ENST00000469595		TCGA	LD	KIRP	TCGA-BQ-5878-01A	RBMS1	chr2	161135059	-	AOX3P	chr2	201587701	+
5CDS-intron	ENST00000409289	ENST00000469595		TCGA	LD	KIRP	TCGA-BQ-5878-01A	RBMS1	chr2	161135059	-	AOX3P	chr2	201587701	+
5CDS-intron	ENST00000392753	ENST00000469595		TCGA	LD	KIRP	TCGA-BQ-5878-01A	RBMS1	chr2	161135059	-	AOX3P	chr2	201587701	+
5CDS-intron	ENST00000409972	ENST00000469595		TCGA	LD	KIRP	TCGA-BQ-5878-01A	RBMS1	chr2	161135059	-	AOX3P	chr2	201587701	+
Frame-shit	ENST00000357277	ENST00000199708		TCGA	LD	KIRP	TCGA-BQ-5880-01A	REPS2	chrX	17024467	+	HBQ1	chr16	230665	+
Frame-shit	ENST00000303843	ENST00000199708		TCGA	LD	KIRP	TCGA-BQ-5880-01A	REPS2	chrX	17024467	+	HBQ1	chr16	230665	+
5UTR-3CDS	ENST00000380064	ENST00000199708		TCGA	LD	KIRP	TCGA-BQ-5880-01A	REPS2	chrX	17024467	+	HBQ1	chr16	230665	+
intron-3CDS	ENST00000469714	ENST00000199708		TCGA	LD	KIRP	TCGA-BQ-5880-01A	REPS2	chrX	17024467	+	HBQ1	chr16	230665	+
intron-3UTR	ENST00000325411	ENST00000361658		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
intron-intron	ENST00000325411	ENST00000395544		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
intron-intron	ENST00000325411	ENST00000580130		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
5UTR-3UTR	ENST00000463318	ENST00000361658		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
5UTR-intron	ENST00000463318	ENST00000395544		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
5UTR-intron	ENST00000463318	ENST00000580130		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
intron-3UTR	ENST00000350657	ENST00000361658		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
intron-intron	ENST00000350657	ENST00000395544		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
intron-intron	ENST00000350657	ENST00000580130		TCGA	LD	KIRP	TCGA-BQ-5880-01A	SLC47A2	chr17	19621424	-	ULK2	chr17	19674380	-
In-frame	ENST00000319545	ENST00000338257		TCGA	LD	KIRP	TCGA-BQ-5890-01A	MRI1	chr19	13879862	+	MYO1F	chr19	8587713	-
5CDS-intron	ENST00000319545	ENST00000595046		TCGA	LD	KIRP	TCGA-BQ-5890-01A	MRI1	chr19	13879862	+	MYO1F	chr19	8587713	-
In-frame	ENST00000040663	ENST00000338257		TCGA	LD	KIRP	TCGA-BQ-5890-01A	MRI1	chr19	13879862	+	MYO1F	chr19	8587713	-
5CDS-intron	ENST00000040663	ENST00000595046		TCGA	LD	KIRP	TCGA-BQ-5890-01A	MRI1	chr19	13879862	+	MYO1F	chr19	8587713	-
intron-5UTR	ENST00000371457	ENST00000342129		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000371457	ENST00000340951		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000371457	ENST00000479452		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000371457	ENST00000475006		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-intron	ENST00000371457	ENST00000465160		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000277531	ENST00000342129		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000277531	ENST00000340951		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000277531	ENST00000479452		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000277531	ENST00000475006		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-intron	ENST00000277531	ENST00000465160		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000406427	ENST00000342129		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000406427	ENST00000340951		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000406427	ENST00000479452		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-5UTR	ENST00000406427	ENST00000475006		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
5CDS-intron	ENST00000406427	ENST00000465160		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000492278	ENST00000342129		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000492278	ENST00000340951		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000492278	ENST00000479452		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-5UTR	ENST00000492278	ENST00000475006		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-intron	ENST00000492278	ENST00000465160		TCGA	LD	KIRP	TCGA-BQ-5890-01A	PNPLA7	chr9	140416088	-	EXD3	chr9	140268051	-
intron-intron	ENST00000588651	ENST00000319545		TCGA	LD	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11715179	+	MRI1	chr19	13879375	+
intron-intron	ENST00000588651	ENST00000040663		TCGA	LD	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11715179	+	MRI1	chr19	13879375	+
intron-intron	ENST00000361113	ENST00000319545		TCGA	LD	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11715179	+	MRI1	chr19	13879375	+
intron-intron	ENST00000361113	ENST00000040663		TCGA	LD	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11715179	+	MRI1	chr19	13879375	+
intron-intron	ENST00000588174	ENST00000319545		TCGA	LD	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11715179	+	MRI1	chr19	13879375	+
intron-intron	ENST00000588174	ENST00000040663		TCGA	LD	KIRP	TCGA-BQ-5890-01A	ZNF627	chr19	11715179	+	MRI1	chr19	13879375	+
5UTR-3CDS	ENST00000488324	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-3CDS	ENST00000488324	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000488324	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-3CDS	ENST00000399199	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-3CDS	ENST00000399199	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
5UTR-intron	ENST00000399199	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000274853	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000274853	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000274853	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000498031	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000498031	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000498031	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000444206	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000444206	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000444206	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000438815	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000438815	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438815	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000552716	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000552716	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000552716	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000491628	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000491628	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000491628	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000435929	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000435929	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435929	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000412189	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000412189	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000412189	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000548255	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000548255	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000548255	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000493833	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000493833	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000493833	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000438945	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000438945	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000438945	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000455935	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000455935	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000455935	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000551049	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000551049	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551049	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000472334	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000472334	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000472334	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000451544	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000451544	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000451544	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000437121	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000437121	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000437121	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000551034	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000551034	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551034	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000465704	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000465704	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000465704	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000383573	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000383573	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000383573	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000400554	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000400554	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000400554	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000550073	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000550073	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000550073	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000492746	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000492746	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000492746	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000449705	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000449705	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000449705	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000443517	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000443517	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000443517	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000551784	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000551784	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000551784	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000487859	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000487859	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000487859	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000435006	ENST00000376406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-3CDS	ENST00000435006	ENST00000376405		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000494654		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000427406		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000547874		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000551460		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000547700		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000481026		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000552522		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000420019		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000548112		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000550004		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000548103		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000473187		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000552474		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000420320		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000552263		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000551204		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000549428		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000495325		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000547681		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000449153		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000553048		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000546487		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000553196		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000494715		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000547353		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000383566		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000548827		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000552349		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000550408		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000481547		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000550688		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000440369		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000547047		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000548542		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000548248		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000482029		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000550500		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000435664		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000548433		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000551740		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000467476		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-intron	ENST00000435006	ENST00000546539		TCGA	LD	KIRP	TCGA-BQ-5891-01A	PPP1R18	chr6	30654891	-	MDC1	chr6	30668409	-
intron-5UTR	ENST00000230323	ENST00000244728		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000230323	ENST00000370819		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000230323	ENST00000535941		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000230323	ENST00000370808		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000230323	ENST00000467045		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000358871	ENST00000244728		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000358871	ENST00000370819		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000358871	ENST00000535941		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000358871	ENST00000370808		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000358871	ENST00000467045		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000420312	ENST00000244728		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000420312	ENST00000370819		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000420312	ENST00000535941		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000420312	ENST00000370808		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000420312	ENST00000467045		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000403298	ENST00000244728		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000403298	ENST00000370819		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000403298	ENST00000535941		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000403298	ENST00000370808		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000403298	ENST00000467045		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
5UTR-5UTR	ENST00000373033	ENST00000244728		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
5UTR-5UTR	ENST00000373033	ENST00000370819		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
5UTR-5UTR	ENST00000373033	ENST00000535941		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
5UTR-intron	ENST00000373033	ENST00000370808		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
5UTR-intron	ENST00000373033	ENST00000467045		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000394283	ENST00000244728		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000394283	ENST00000370819		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-5UTR	ENST00000394283	ENST00000535941		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000394283	ENST00000370808		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
intron-intron	ENST00000394283	ENST00000467045		TCGA	LD	KIRP	TCGA-BQ-7048-01A	TFEB	chr6	41703089	-	COL21A1	chr6	56047455	-
In-frame	ENST00000005260	ENST00000397752		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
In-frame	ENST00000005260	ENST00000318493		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5CDS-intron	ENST00000005260	ENST00000436117		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5CDS-intron	ENST00000005260	ENST00000495962		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5CDS-intron	ENST00000005260	ENST00000539704		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5UTR-3CDS	ENST00000462558	ENST00000397752		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5UTR-3CDS	ENST00000462558	ENST00000318493		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5UTR-intron	ENST00000462558	ENST00000436117		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5UTR-intron	ENST00000462558	ENST00000495962		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
5UTR-intron	ENST00000462558	ENST00000539704		TCGA	LD	KIRP	TCGA-BQ-7049-01A	BAIAP2L1	chr7	97939757	-	MET	chr7	116414935	+
Frame-shit	ENST00000606738	ENST00000371833		TCGA	LD	KIRP	TCGA-BQ-7051-01A	TRABD2B	chr1	48459706	-	BEND5	chr1	49193715	-
5CDS-5UTR	ENST00000606738	ENST00000476096		TCGA	LD	KIRP	TCGA-BQ-7051-01A	TRABD2B	chr1	48459706	-	BEND5	chr1	49193715	-
5UTR-3CDS	ENST00000435576	ENST00000371833		TCGA	LD	KIRP	TCGA-BQ-7051-01A	TRABD2B	chr1	48459706	-	BEND5	chr1	49193715	-
5UTR-5UTR	ENST00000435576	ENST00000476096		TCGA	LD	KIRP	TCGA-BQ-7051-01A	TRABD2B	chr1	48459706	-	BEND5	chr1	49193715	-
5CDS-5UTR	ENST00000221455	ENST00000301073		TCGA	LD	KIRP	TCGA-F9-A4JJ-01A	CLASRP	chr19	45556435	+	ZNF524	chr19	56113441	+
5CDS-5UTR	ENST00000221455	ENST00000591046		TCGA	LD	KIRP	TCGA-F9-A4JJ-01A	CLASRP	chr19	45556435	+	ZNF524	chr19	56113441	+
5CDS-5UTR	ENST00000391953	ENST00000301073		TCGA	LD	KIRP	TCGA-F9-A4JJ-01A	CLASRP	chr19	45556435	+	ZNF524	chr19	56113441	+
5CDS-5UTR	ENST00000391953	ENST00000591046		TCGA	LD	KIRP	TCGA-F9-A4JJ-01A	CLASRP	chr19	45556435	+	ZNF524	chr19	56113441	+
5CDS-5UTR	ENST00000544944	ENST00000301073		TCGA	LD	KIRP	TCGA-F9-A4JJ-01A	CLASRP	chr19	45556435	+	ZNF524	chr19	56113441	+
5CDS-5UTR	ENST00000544944	ENST00000591046		TCGA	LD	KIRP	TCGA-F9-A4JJ-01A	CLASRP	chr19	45556435	+	ZNF524	chr19	56113441	+
5UTR-3CDS	ENST00000310924	ENST00000263805		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
5UTR-3CDS	ENST00000310924	ENST00000565380		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
5UTR-3CDS	ENST00000310924	ENST00000565611		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
5UTR-5UTR	ENST00000310924	ENST00000565660		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000576768	ENST00000263805		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000576768	ENST00000565380		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000576768	ENST00000565611		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-5UTR	ENST00000576768	ENST00000565660		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000340848	ENST00000263805		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000340848	ENST00000565380		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000340848	ENST00000565611		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-5UTR	ENST00000340848	ENST00000565660		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000572862	ENST00000263805		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000572862	ENST00000565380		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000572862	ENST00000565611		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-5UTR	ENST00000572862	ENST00000565660		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000570373	ENST00000263805		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000570373	ENST00000565380		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-3CDS	ENST00000570373	ENST00000565611		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-5UTR	ENST00000570373	ENST00000565660		TCGA	LD	KIRP	TCGA-F9-A7Q0-01A	TBC1D16	chr17	78009594	-	ZNF106	chr15	42716258	-
intron-intron	ENST00000349048	ENST00000291582		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000349048	ENST00000329347		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000349048	ENST00000355347		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000403390	ENST00000291582		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000403390	ENST00000329347		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000403390	ENST00000355347		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000496824	ENST00000291582		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000496824	ENST00000329347		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
intron-intron	ENST00000496824	ENST00000355347		TCGA	LD	KIRP	TCGA-F9-A97G-01A	PFKL	chr21	45739711	+	AIRE	chr21	45708451	+
5UTR-3CDS	ENST00000446765	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
5UTR-3CDS	ENST00000446765	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
5UTR-3CDS	ENST00000446765	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
5UTR-3CDS	ENST00000446765	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
5UTR-3CDS	ENST00000446765	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
5UTR-5UTR	ENST00000446765	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000342166	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000342166	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000342166	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000342166	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000342166	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-5UTR	ENST00000342166	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000295066	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000295066	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000295066	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000295066	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000295066	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
intron-5UTR	ENST00000295066	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	DPY30	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000264712	ENST00000308624		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
In-frame	ENST00000264712	ENST00000407292		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
5CDS-intron	ENST00000264712	ENST00000467759		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
Frame-shit	ENST00000405914	ENST00000308624		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
Frame-shit	ENST00000405914	ENST00000407292		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
5CDS-intron	ENST00000405914	ENST00000467759		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
intron-3CDS	ENST00000496378	ENST00000308624		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
intron-3CDS	ENST00000496378	ENST00000407292		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
intron-intron	ENST00000496378	ENST00000467759		TCGA	LD	KIRP	TCGA-G7-6792-01A	KIF3C	chr2	26203242	-	SNTG2	chr2	1079204	+
In-frame	ENST00000295065	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000295065	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000295065	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000295065	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000295065	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
5CDS-5UTR	ENST00000295065	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000379383	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000379383	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000379383	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000379383	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000379383	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
5CDS-5UTR	ENST00000379383	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
Frame-shit	ENST00000404530	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
Frame-shit	ENST00000404530	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
Frame-shit	ENST00000404530	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
Frame-shit	ENST00000404530	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
Frame-shit	ENST00000404530	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
5CDS-5UTR	ENST00000404530	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000490459	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000490459	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000490459	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000490459	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000490459	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-5UTR	ENST00000490459	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000426310	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000426310	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000426310	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000426310	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
In-frame	ENST00000426310	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
5CDS-5UTR	ENST00000426310	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000407893	ENST00000254636		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000407893	ENST00000449247		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000407893	ENST00000410111		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000407893	ENST00000442664		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-3CDS	ENST00000407893	ENST00000409051		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
intron-5UTR	ENST00000407893	ENST00000490238		TCGA	LD	KIRP	TCGA-G7-6792-01A	MEMO1	chr2	32108455	-	IMMT	chr2	86389202	-
Frame-shit	ENST00000264993	ENST00000242810		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000264993	ENST00000454652		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000264993	ENST00000476808		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
5CDS-intron	ENST00000264993	ENST00000461813		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000431519	ENST00000242810		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000431519	ENST00000454652		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000431519	ENST00000476808		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
5CDS-intron	ENST00000431519	ENST00000461813		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000508481	ENST00000242810		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000508481	ENST00000454652		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000508481	ENST00000476808		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
5CDS-intron	ENST00000508481	ENST00000461813		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000420115	ENST00000242810		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000420115	ENST00000454652		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000420115	ENST00000476808		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
5CDS-intron	ENST00000420115	ENST00000461813		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000511392	ENST00000242810		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000511392	ENST00000454652		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000511392	ENST00000476808		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
5CDS-intron	ENST00000511392	ENST00000461813		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000515421	ENST00000242810		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000515421	ENST00000454652		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
Frame-shit	ENST00000515421	ENST00000476808		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
5CDS-intron	ENST00000515421	ENST00000461813		TCGA	LD	KIRP	TCGA-G7-6793-01A	CDV3	chr3	133293959	+	KLHL24	chr3	183390084	+
In-frame	ENST00000303127	ENST00000309007		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
In-frame	ENST00000303127	ENST00000292385		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
In-frame	ENST00000303127	ENST00000393565		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000303127	ENST00000393563		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000303127	ENST00000512501		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
In-frame	ENST00000515209	ENST00000309007		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
In-frame	ENST00000515209	ENST00000292385		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
In-frame	ENST00000515209	ENST00000393565		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000515209	ENST00000393563		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000515209	ENST00000512501		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000506310	ENST00000309007		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000506310	ENST00000292385		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000506310	ENST00000393565		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5UTR-5UTR	ENST00000506310	ENST00000393563		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
5UTR-5UTR	ENST00000506310	ENST00000512501		TCGA	LD	KIRP	TCGA-G7-6793-01A	LMAN2	chr5	176778174	-	DBN1	chr5	176887704	-
Frame-shit	ENST00000379666	ENST00000326019		TCGA	LD	KIRP	TCGA-G7-6793-01A	MRPL33	chr2	27995559	+	SLC4A1AP	chr2	27898399	+
Frame-shit	ENST00000296102	ENST00000326019		TCGA	LD	KIRP	TCGA-G7-6793-01A	MRPL33	chr2	27995559	+	SLC4A1AP	chr2	27898399	+
3UTR-3CDS	ENST00000483992	ENST00000326019		TCGA	LD	KIRP	TCGA-G7-6793-01A	MRPL33	chr2	27995559	+	SLC4A1AP	chr2	27898399	+
5CDS-5UTR	ENST00000316218	ENST00000457714		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000316218	ENST00000361589		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000316218	ENST00000401917		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000316218	ENST00000545397		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000316218	ENST00000466350		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
intron-5UTR	ENST00000467157	ENST00000457714		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
intron-5UTR	ENST00000467157	ENST00000361589		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000467157	ENST00000401917		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000467157	ENST00000545397		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000467157	ENST00000466350		TCGA	LD	KIRP	TCGA-G7-6793-01A	PDIA5	chr3	122821643	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000393923	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000393923	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000393923	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000412622	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000412622	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000412622	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000431670	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000431670	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000431670	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000393925	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000393925	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000393925	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000481953	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000481953	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000481953	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000495180	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000495180	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000495180	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000478922	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000478922	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000478922	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000477695	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000477695	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000477695	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000470699	ENST00000265062		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000470699	ENST00000482525		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000470699	ENST00000485280		TCGA	LD	KIRP	TCGA-G7-6793-01A	PHLDB2	chr3	111658477	+	RAB7A	chr3	128514203	+
5UTR-3CDS	ENST00000265062	ENST00000464300		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-3CDS	ENST00000265062	ENST00000483793		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-3UTR	ENST00000265062	ENST00000465304		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-intron	ENST00000265062	ENST00000493645		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-intron	ENST00000265062	ENST00000310366		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-3CDS	ENST00000482525	ENST00000464300		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-3CDS	ENST00000482525	ENST00000483793		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-3UTR	ENST00000482525	ENST00000465304		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-intron	ENST00000482525	ENST00000493645		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
5UTR-intron	ENST00000482525	ENST00000310366		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
intron-3CDS	ENST00000485280	ENST00000464300		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
intron-3CDS	ENST00000485280	ENST00000483793		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
intron-3UTR	ENST00000485280	ENST00000465304		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
intron-intron	ENST00000485280	ENST00000493645		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
intron-intron	ENST00000485280	ENST00000310366		TCGA	LD	KIRP	TCGA-G7-6793-01A	RAB7A	chr3	128445202	+	PARP15	chr3	122324783	+
Frame-shit	ENST00000508628	ENST00000361193		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000508628	ENST00000411502		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000508628	ENST00000546047		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5CDS-intron	ENST00000508628	ENST00000571602		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5CDS-intron	ENST00000508628	ENST00000572725		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000456466	ENST00000361193		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000456466	ENST00000411502		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000456466	ENST00000546047		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-intron	ENST00000456466	ENST00000571602		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-intron	ENST00000456466	ENST00000572725		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000582970	ENST00000361193		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000582970	ENST00000411502		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000582970	ENST00000546047		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5CDS-intron	ENST00000582970	ENST00000571602		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5CDS-intron	ENST00000582970	ENST00000572725		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000319921	ENST00000361193		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000319921	ENST00000411502		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000319921	ENST00000546047		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-intron	ENST00000319921	ENST00000571602		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-intron	ENST00000319921	ENST00000572725		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000336301	ENST00000361193		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000336301	ENST00000411502		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
Frame-shit	ENST00000336301	ENST00000546047		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5CDS-intron	ENST00000336301	ENST00000571602		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5CDS-intron	ENST00000336301	ENST00000572725		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000427003	ENST00000361193		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000427003	ENST00000411502		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-3CDS	ENST00000427003	ENST00000546047		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-intron	ENST00000427003	ENST00000571602		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
intron-intron	ENST00000427003	ENST00000572725		TCGA	LD	KIRP	TCGA-G7-6793-01A	RNF213	chr17	78332279	+	SLC26A11	chr17	78221929	+
5UTR-3CDS	ENST00000305135	ENST00000295797		TCGA	LD	KIRP	TCGA-G7-6793-01A	YEATS2	chr3	183415781	+	PRKCI	chr3	169953018	+
Frame-shit	ENST00000406625	ENST00000372621		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
Frame-shit	ENST00000406625	ENST00000541520		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
5CDS-intron	ENST00000406625	ENST00000475060		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
5CDS-intron	ENST00000406625	ENST00000543104		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
5CDS-intron	ENST00000406625	ENST00000372616		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
intron-3CDS	ENST00000498475	ENST00000372621		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
intron-3CDS	ENST00000498475	ENST00000541520		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
intron-intron	ENST00000498475	ENST00000475060		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
intron-intron	ENST00000498475	ENST00000543104		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
intron-intron	ENST00000498475	ENST00000372616		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ASB3	chr2	53921021	-	CTPS1	chr1	41473121	+
Frame-shit	ENST00000372621	ENST00000406625		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
5CDS-intron	ENST00000372621	ENST00000498475		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
Frame-shit	ENST00000541520	ENST00000406625		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
5CDS-intron	ENST00000541520	ENST00000498475		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
intron-3CDS	ENST00000475060	ENST00000406625		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
intron-intron	ENST00000475060	ENST00000498475		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
intron-3CDS	ENST00000543104	ENST00000406625		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
intron-intron	ENST00000543104	ENST00000498475		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
Frame-shit	ENST00000372616	ENST00000406625		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
5CDS-intron	ENST00000372616	ENST00000498475		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	CTPS1	chr1	41474562	+	ASB3	chr2	53897827	-
Frame-shit	ENST00000326005	ENST00000345662		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
Frame-shit	ENST00000326005	ENST00000315285		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
Frame-shit	ENST00000560258	ENST00000345662		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
Frame-shit	ENST00000560258	ENST00000315285		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
5UTR-3CDS	ENST00000559753	ENST00000345662		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
5UTR-3CDS	ENST00000559753	ENST00000315285		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
5UTR-3CDS	ENST00000560837	ENST00000345662		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
5UTR-3CDS	ENST00000560837	ENST00000315285		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	OAZ2	chr15	64995228	-	SPAST	chr2	32366973	+
3UTR-3CDS	ENST00000326648	ENST00000361413		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
3UTR-3CDS	ENST00000326648	ENST00000542606		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
3UTR-3CDS	ENST00000326648	ENST00000572370		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
3UTR-3CDS	ENST00000326648	ENST00000589033		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
3UTR-intron	ENST00000326648	ENST00000575027		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000416172	ENST00000361413		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000416172	ENST00000542606		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000416172	ENST00000572370		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000416172	ENST00000589033		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-intron	ENST00000416172	ENST00000575027		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000559364	ENST00000361413		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000559364	ENST00000542606		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000559364	ENST00000572370		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-3CDS	ENST00000559364	ENST00000589033		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
intron-intron	ENST00000559364	ENST00000575027		TCGA	LD	KIRP	TCGA-G7-A8LD-01A	ZNF609	chr15	64973586	+	KIAA0753	chr17	6483184	-
Frame-shit	ENST00000269554	ENST00000394332		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5CDS-intron	ENST00000269554	ENST00000394333		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5CDS-intron	ENST00000269554	ENST00000479035		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5CDS-intron	ENST00000269554	ENST00000245857		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5CDS-intron	ENST00000269554	ENST00000577407		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5UTR-3CDS	ENST00000311500	ENST00000394332		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5UTR-intron	ENST00000311500	ENST00000394333		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5UTR-intron	ENST00000311500	ENST00000479035		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5UTR-intron	ENST00000311500	ENST00000245857		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5UTR-intron	ENST00000311500	ENST00000577407		TCGA	LD	KIRP	TCGA-GL-7966-01A	PIP4K2B	chr17	36933940	-	RPL23	chr17	37006728	-
5CDS-intron	ENST00000261427	ENST00000503431		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000261427	ENST00000284440		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000261427	ENST00000504818		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000261427	ENST00000508768		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000261427	ENST00000512788		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000295963	ENST00000503431		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000295963	ENST00000284440		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000295963	ENST00000504818		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000295963	ENST00000508768		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000295963	ENST00000512788		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000438068	ENST00000503431		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000438068	ENST00000284440		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000438068	ENST00000504818		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000438068	ENST00000508768		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000438068	ENST00000512788		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000503368	ENST00000503431		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000503368	ENST00000284440		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000503368	ENST00000504818		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000503368	ENST00000508768		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000503368	ENST00000512788		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000445950	ENST00000503431		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000445950	ENST00000284440		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000445950	ENST00000504818		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000445950	ENST00000508768		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000445950	ENST00000512788		TCGA	LD	KIRP	TCGA-GL-7966-01A	UBE2K	chr4	39700010	+	UCHL1	chr4	41258610	+
In-frame	ENST00000251527	ENST00000262178		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
In-frame	ENST00000251527	ENST00000377633		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
In-frame	ENST00000251527	ENST00000402066		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
5CDS-intron	ENST00000251527	ENST00000421760		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-3CDS	ENST00000497111	ENST00000262178		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-3CDS	ENST00000497111	ENST00000377633		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-3CDS	ENST00000497111	ENST00000402066		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-intron	ENST00000497111	ENST00000421760		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-3CDS	ENST00000435514	ENST00000262178		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-3CDS	ENST00000435514	ENST00000377633		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-3CDS	ENST00000435514	ENST00000402066		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
intron-intron	ENST00000435514	ENST00000421760		TCGA	LD	KIRP	TCGA-GL-8500-01A	ESYT2	chr7	158580695	-	VIPR2	chr7	158851269	-
5UTR-intron	ENST00000286953	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000286953	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
intron-intron	ENST00000554880	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000555030	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000414262	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553430	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000557040	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000553449	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000557515		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000338631		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000357481		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000605057		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000457657		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000262710		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000397341		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000555053		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
5UTR-intron	ENST00000554713	ENST00000555352		TCGA	LD	KIRP	TCGA-GL-A9DE-01A	C14orf2	chr14	104387807	-	ACIN1	chr14	23559310	-
In-frame	ENST00000540367	ENST00000343526		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
In-frame	ENST00000540367	ENST00000415680		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
5CDS-3UTR	ENST00000540367	ENST00000497516		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
Frame-shit	ENST00000376618	ENST00000343526		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
Frame-shit	ENST00000376618	ENST00000415680		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
5CDS-3UTR	ENST00000376618	ENST00000497516		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
Frame-shit	ENST00000265641	ENST00000343526		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
Frame-shit	ENST00000265641	ENST00000415680		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
5CDS-3UTR	ENST00000265641	ENST00000497516		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
In-frame	ENST00000539743	ENST00000343526		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
In-frame	ENST00000539743	ENST00000415680		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
5CDS-3UTR	ENST00000539743	ENST00000497516		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
intron-3CDS	ENST00000537756	ENST00000343526		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
intron-3CDS	ENST00000537756	ENST00000415680		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
intron-3UTR	ENST00000537756	ENST00000497516		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
intron-3CDS	ENST00000538994	ENST00000343526		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
intron-3CDS	ENST00000538994	ENST00000415680		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
intron-3UTR	ENST00000538994	ENST00000497516		TCGA	LD	KIRP	TCGA-HE-7130-01A	CPT1A	chr11	68574935	-	TRIM24	chr7	138235808	+
Frame-shit	ENST00000579662	ENST00000520367		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000579662	ENST00000518137		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000523999		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000323854		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000522751		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000520284		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000517795		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000518907		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000521847		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000518644		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000518901		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000579662	ENST00000517295		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000339591	ENST00000520367		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000339591	ENST00000518137		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000523999		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000323854		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000522751		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000520284		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000517795		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000518907		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000521847		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000518644		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000518901		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000339591	ENST00000517295		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000200181	ENST00000520367		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000200181	ENST00000518137		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000523999		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000323854		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000522751		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000520284		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000517795		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000518907		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000521847		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000518644		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000518901		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000200181	ENST00000517295		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000450894	ENST00000520367		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000450894	ENST00000518137		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000523999		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000323854		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000522751		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000520284		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000517795		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000518907		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000521847		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000518644		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000518901		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000450894	ENST00000517295		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000449880	ENST00000520367		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
Frame-shit	ENST00000449880	ENST00000518137		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000523999		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000323854		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000522751		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000520284		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000517795		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000518907		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000521847		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000518644		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000518901		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
5CDS-intron	ENST00000449880	ENST00000517295		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-3CDS	ENST00000584558	ENST00000520367		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-3CDS	ENST00000584558	ENST00000518137		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000523999		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000323854		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000522751		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000520284		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000517795		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000518907		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000521847		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000518644		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000518901		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
3UTR-intron	ENST00000584558	ENST00000517295		TCGA	LD	KIRP	TCGA-HE-7130-01A	ITGB4	chr17	73729773	+	ENDOV	chr17	78403573	+
intron-3CDS	ENST00000329697	ENST00000256646		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000329697	ENST00000602566		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000329697	ENST00000493703		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000565322	ENST00000256646		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000565322	ENST00000602566		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000565322	ENST00000493703		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-3CDS	ENST00000565232	ENST00000256646		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-intron	ENST00000565232	ENST00000602566		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-5UTR	ENST00000565232	ENST00000493703		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-3CDS	ENST00000567001	ENST00000256646		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-intron	ENST00000567001	ENST00000602566		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-5UTR	ENST00000567001	ENST00000493703		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000414188	ENST00000256646		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000414188	ENST00000602566		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000414188	ENST00000493703		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-3CDS	ENST00000567288	ENST00000256646		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-intron	ENST00000567288	ENST00000602566		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
intron-5UTR	ENST00000567288	ENST00000493703		TCGA	LD	KIRP	TCGA-IA-A40X-01A	ACSM2B	chr16	20586744	-	NOTCH2	chr1	120465401	-
5UTR-3CDS	ENST00000306149	ENST00000216254		TCGA	LD	KIRP	TCGA-J7-8537-01A	CSDC2	chr22	41957187	+	ACO2	chr22	41895730	+
5UTR-3CDS	ENST00000306149	ENST00000396512		TCGA	LD	KIRP	TCGA-J7-8537-01A	CSDC2	chr22	41957187	+	ACO2	chr22	41895730	+
5UTR-intron	ENST00000306149	ENST00000466237		TCGA	LD	KIRP	TCGA-J7-8537-01A	CSDC2	chr22	41957187	+	ACO2	chr22	41895730	+
intron-3CDS	ENST00000384891	ENST00000338970		TCGA	LD	KIRP	TCGA-J7-A8I2-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
intron-3CDS	ENST00000384891	ENST00000396203		TCGA	LD	KIRP	TCGA-J7-A8I2-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
intron-3UTR	ENST00000384891	ENST00000416518		TCGA	LD	KIRP	TCGA-J7-A8I2-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
intron-intron	ENST00000384891	ENST00000461368		TCGA	LD	KIRP	TCGA-J7-A8I2-01A	MIR205HG	chr1	209605675	+	RPL14	chr3	40503555	+
In-frame	ENST00000557943	ENST00000358154		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
In-frame	ENST00000557943	ENST00000396014		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5CDS-intron	ENST00000557943	ENST00000563026		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
In-frame	ENST00000433983	ENST00000358154		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
In-frame	ENST00000433983	ENST00000396014		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5CDS-intron	ENST00000433983	ENST00000563026		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5UTR-3CDS	ENST00000560726	ENST00000358154		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5UTR-3CDS	ENST00000560726	ENST00000396014		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5UTR-intron	ENST00000560726	ENST00000563026		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
In-frame	ENST00000559602	ENST00000358154		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
In-frame	ENST00000559602	ENST00000396014		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5CDS-intron	ENST00000559602	ENST00000563026		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
intron-3CDS	ENST00000560816	ENST00000358154		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
intron-3CDS	ENST00000560816	ENST00000396014		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
intron-intron	ENST00000560816	ENST00000563026		TCGA	LD	KIRP	TCGA-MH-A55Z-01A	ETFA	chr15	76603691	-	METTL9	chr16	21623966	+
5CDS-intron	ENST00000376170	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000359188	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376142	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376139	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376160	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376166	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376138	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000355394	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000490841	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376137	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000346832	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000536334	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376134	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000376140	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5UTR-intron	ENST00000473481	ENST00000284414		TCGA	LD	KIRP	TCGA-O9-A75Z-01A	ABI1	chr10	27112067	-	LRRC37A6P	chr10	27546879	-
5CDS-intron	ENST00000320895	ENST00000360835		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000320895	ENST00000290460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000320895	ENST00000470433		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000507807	ENST00000360835		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000507807	ENST00000290460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000507807	ENST00000470433		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000320927	ENST00000360835		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000320927	ENST00000290460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5CDS-intron	ENST00000320927	ENST00000470433		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5UTR-intron	ENST00000506641	ENST00000360835		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5UTR-intron	ENST00000506641	ENST00000290460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
5UTR-intron	ENST00000506641	ENST00000470433		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	CLPTM1L	chr5	1322992	-	SCUBE1	chr22	43651583	-
intron-3CDS	ENST00000455485	ENST00000414786		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	GUSBP11	chr22	24059218	-	SHANK3	chr22	51137118	+
intron-3CDS	ENST00000455485	ENST00000445220		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	GUSBP11	chr22	24059218	-	SHANK3	chr22	51137118	+
intron-3CDS	ENST00000455485	ENST00000262795		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	GUSBP11	chr22	24059218	-	SHANK3	chr22	51137118	+
In-frame	ENST00000325324	ENST00000304460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	IPO11	chr5	61772580	+	SLC6A19	chr5	1219018	+
In-frame	ENST00000409296	ENST00000304460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	IPO11	chr5	61772580	+	SLC6A19	chr5	1219018	+
intron-3CDS	ENST00000409534	ENST00000304460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	IPO11	chr5	61772580	+	SLC6A19	chr5	1219018	+
intron-3CDS	ENST00000512177	ENST00000304460		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	IPO11	chr5	61772580	+	SLC6A19	chr5	1219018	+
5UTR-3CDS	ENST00000406486	ENST00000380985		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
5UTR-3CDS	ENST00000406486	ENST00000502464		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
5UTR-intron	ENST00000406486	ENST00000515595		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000358431	ENST00000380985		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000358431	ENST00000502464		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
intron-intron	ENST00000358431	ENST00000515595		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000401395	ENST00000380985		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
intron-3CDS	ENST00000401395	ENST00000502464		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
intron-intron	ENST00000401395	ENST00000515595		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	KIAA1671	chr22	25348739	+	NLN	chr5	65105342	+
Frame-shit	ENST00000404072	ENST00000264933		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-intron	ENST00000404072	ENST00000505221		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-intron	ENST00000404072	ENST00000509581		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-intron	ENST00000404072	ENST00000507528		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-3UTR	ENST00000404072	ENST00000511482		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
intron-3CDS	ENST00000468288	ENST00000264933		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
intron-intron	ENST00000468288	ENST00000505221		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
intron-intron	ENST00000468288	ENST00000509581		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
intron-intron	ENST00000468288	ENST00000507528		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
intron-3UTR	ENST00000468288	ENST00000511482		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
Frame-shit	ENST00000356976	ENST00000264933		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-intron	ENST00000356976	ENST00000505221		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-intron	ENST00000356976	ENST00000509581		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-intron	ENST00000356976	ENST00000507528		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
5CDS-3UTR	ENST00000356976	ENST00000511482		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	PICK1	chr22	38470974	+	PDCD6	chr5	311408	+
Frame-shit	ENST00000264932	ENST00000215754		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	SDHA	chr5	236714	+	MIF	chr22	24236959	+
Frame-shit	ENST00000504309	ENST00000215754		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	SDHA	chr5	236714	+	MIF	chr22	24236959	+
Frame-shit	ENST00000510361	ENST00000215754		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	SDHA	chr5	236714	+	MIF	chr22	24236959	+
intron-3CDS	ENST00000507522	ENST00000215754		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	SDHA	chr5	236714	+	MIF	chr22	24236959	+
5CDS-intron	ENST00000301923	ENST00000322611		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17212229	+
5CDS-intron	ENST00000402203	ENST00000322611		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17212229	+
intron-intron	ENST00000454349	ENST00000322611		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17212229	+
intron-intron	ENST00000335727	ENST00000322611		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17212229	+
intron-intron	ENST00000497559	ENST00000322611		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TNRC6B	chr22	40552186	+	BASP1	chr5	17212229	+
Frame-shit	ENST00000397906	ENST00000406486		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TTC28	chr22	29075610	-	KIAA1671	chr22	25586669	+
Frame-shit	ENST00000397906	ENST00000358431		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TTC28	chr22	29075610	-	KIAA1671	chr22	25586669	+
Frame-shit	ENST00000397906	ENST00000401395		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TTC28	chr22	29075610	-	KIAA1671	chr22	25586669	+
intron-3CDS	ENST00000490475	ENST00000406486		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TTC28	chr22	29075610	-	KIAA1671	chr22	25586669	+
intron-3CDS	ENST00000490475	ENST00000358431		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TTC28	chr22	29075610	-	KIAA1671	chr22	25586669	+
intron-3CDS	ENST00000490475	ENST00000401395		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	TTC28	chr22	29075610	-	KIAA1671	chr22	25586669	+
In-frame	ENST00000265069	ENST00000265109		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
In-frame	ENST00000265069	ENST00000512629		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
In-frame	ENST00000265069	ENST00000428746		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
In-frame	ENST00000265069	ENST00000503673		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
In-frame	ENST00000265069	ENST00000515799		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
In-frame	ENST00000265069	ENST00000506376		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
5CDS-3UTR	ENST00000265069	ENST00000507276		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
5CDS-3UTR	ENST00000265069	ENST00000397449		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3CDS	ENST00000510369	ENST00000265109		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3CDS	ENST00000510369	ENST00000512629		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3CDS	ENST00000510369	ENST00000428746		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3CDS	ENST00000510369	ENST00000503673		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3CDS	ENST00000510369	ENST00000515799		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3CDS	ENST00000510369	ENST00000506376		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3UTR	ENST00000510369	ENST00000507276		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
intron-3UTR	ENST00000510369	ENST00000397449		TCGA	LD	KIRP	TCGA-P4-A5EB-01A	ZFR	chr5	32444335	-	RAI14	chr5	34796044	+
In-frame	ENST00000538546	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000538546	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
5CDS-3UTR	ENST00000538546	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
3UTR-3CDS	ENST00000535623	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
3UTR-3CDS	ENST00000535623	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
3UTR-3UTR	ENST00000535623	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
intron-3CDS	ENST00000535011	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
intron-3CDS	ENST00000535011	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
intron-3UTR	ENST00000535011	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000542996	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000542996	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
5CDS-3UTR	ENST00000542996	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000249364	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000249364	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
5CDS-3UTR	ENST00000249364	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000449187	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000449187	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
5CDS-3UTR	ENST00000449187	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000479257	ENST00000226299		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
In-frame	ENST00000479257	ENST00000606142		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
5CDS-3UTR	ENST00000479257	ENST00000503467		TCGA	LD	KIRP	TCGA-PJ-A5Z8-01A	CALU	chr7	128407709	+	LAP3	chr4	17600079	+
5UTR-3CDS	ENST00000314073	ENST00000441310		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-3CDS	ENST00000314073	ENST00000418224		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-3CDS	ENST00000314073	ENST00000409823		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-3UTR	ENST00000314073	ENST00000421722		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-intron	ENST00000314073	ENST00000447232		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-intron	ENST00000314073	ENST00000432292		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-intron	ENST00000314073	ENST00000409985		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
5UTR-intron	ENST00000314073	ENST00000374826		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000394168	ENST00000441310		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000394168	ENST00000418224		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000394168	ENST00000409823		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-3UTR	ENST00000394168	ENST00000421722		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-intron	ENST00000394168	ENST00000447232		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-intron	ENST00000394168	ENST00000432292		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-intron	ENST00000394168	ENST00000409985		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-intron	ENST00000394168	ENST00000374826		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	GLTSCR1L	chr6	42749839	+	PMS1	chr2	190728469	+
intron-3CDS	ENST00000472748	ENST00000409885		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	SLC25A12	chr2	172856257	-	ERICH2	chr2	171654551	+
intron-3CDS	ENST00000422440	ENST00000409885		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	SLC25A12	chr2	172856257	-	ERICH2	chr2	171654551	+
intron-3CDS	ENST00000392592	ENST00000409885		TCGA	LD	KIRP	TCGA-Q2-A5QZ-01A	SLC25A12	chr2	172856257	-	ERICH2	chr2	171654551	+
5CDS-5UTR	ENST00000359314	ENST00000541110		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
5CDS-5UTR	ENST00000359314	ENST00000372917		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
5CDS-5UTR	ENST00000359314	ENST00000372922		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
5CDS-5UTR	ENST00000359314	ENST00000340840		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
5CDS-5UTR	ENST00000359314	ENST00000354325		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000486693	ENST00000541110		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000486693	ENST00000372917		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000486693	ENST00000372922		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000486693	ENST00000340840		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000486693	ENST00000354325		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	CD2AP	chr6	47522502	+	TRERF1	chr6	42268487	-
5CDS-3UTR	ENST00000358077	ENST00000563763		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000358077	ENST00000574946		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000358077	ENST00000573634		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000358077	ENST00000317744		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000358077	ENST00000574232		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000358077	ENST00000539421		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-3UTR	ENST00000472284	ENST00000563763		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000472284	ENST00000574946		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000472284	ENST00000573634		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000472284	ENST00000317744		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000472284	ENST00000574232		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000472284	ENST00000539421		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-3UTR	ENST00000469640	ENST00000563763		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000469640	ENST00000574946		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000469640	ENST00000573634		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000469640	ENST00000317744		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000469640	ENST00000574232		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000469640	ENST00000539421		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-3UTR	ENST00000408954	ENST00000563763		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000408954	ENST00000574946		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000408954	ENST00000573634		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000408954	ENST00000317744		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000408954	ENST00000574232		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000408954	ENST00000539421		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-3UTR	ENST00000491893	ENST00000563763		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000491893	ENST00000574946		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000491893	ENST00000573634		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000491893	ENST00000317744		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000491893	ENST00000574232		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
5CDS-intron	ENST00000491893	ENST00000539421		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
3UTR-3UTR	ENST00000466188	ENST00000563763		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
3UTR-intron	ENST00000466188	ENST00000574946		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
3UTR-intron	ENST00000466188	ENST00000573634		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
3UTR-intron	ENST00000466188	ENST00000317744		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
3UTR-intron	ENST00000466188	ENST00000574232		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
3UTR-intron	ENST00000466188	ENST00000539421		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	DAPK1	chr9	90273042	+	WSCD1	chr17	5792077	+
Frame-shit	ENST00000372236	ENST00000371117		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	POLH	chr6	43568828	+	PKHD1	chr6	51656171	-
Frame-shit	ENST00000372236	ENST00000340994		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	POLH	chr6	43568828	+	PKHD1	chr6	51656171	-
Frame-shit	ENST00000535400	ENST00000371117		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	POLH	chr6	43568828	+	PKHD1	chr6	51656171	-
Frame-shit	ENST00000535400	ENST00000340994		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	POLH	chr6	43568828	+	PKHD1	chr6	51656171	-
Frame-shit	ENST00000372226	ENST00000371117		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	POLH	chr6	43568828	+	PKHD1	chr6	51656171	-
Frame-shit	ENST00000372226	ENST00000340994		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	POLH	chr6	43568828	+	PKHD1	chr6	51656171	-
3UTR-3CDS	ENST00000451677	ENST00000376351		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	RPP38	chr10	15153785	+	GPR158	chr10	25509981	+
3UTR-intron	ENST00000451677	ENST00000490549		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	RPP38	chr10	15153785	+	GPR158	chr10	25509981	+
intron-3CDS	ENST00000378202	ENST00000376351		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	RPP38	chr10	15153785	+	GPR158	chr10	25509981	+
intron-intron	ENST00000378202	ENST00000490549		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	RPP38	chr10	15153785	+	GPR158	chr10	25509981	+
intron-3CDS	ENST00000378197	ENST00000376351		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	RPP38	chr10	15153785	+	GPR158	chr10	25509981	+
intron-intron	ENST00000378197	ENST00000490549		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	RPP38	chr10	15153785	+	GPR158	chr10	25509981	+
3UTR-3CDS	ENST00000563763	ENST00000358077		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000563763	ENST00000472284		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000563763	ENST00000469640		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000563763	ENST00000408954		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
3UTR-3CDS	ENST00000563763	ENST00000491893		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
3UTR-3UTR	ENST00000563763	ENST00000466188		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574946	ENST00000358077		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574946	ENST00000472284		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574946	ENST00000469640		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574946	ENST00000408954		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574946	ENST00000491893		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3UTR	ENST00000574946	ENST00000466188		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000573634	ENST00000358077		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000573634	ENST00000472284		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000573634	ENST00000469640		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000573634	ENST00000408954		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000573634	ENST00000491893		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3UTR	ENST00000573634	ENST00000466188		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000317744	ENST00000358077		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000317744	ENST00000472284		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000317744	ENST00000469640		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000317744	ENST00000408954		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000317744	ENST00000491893		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3UTR	ENST00000317744	ENST00000466188		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574232	ENST00000358077		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574232	ENST00000472284		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574232	ENST00000469640		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574232	ENST00000408954		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000574232	ENST00000491893		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3UTR	ENST00000574232	ENST00000466188		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000539421	ENST00000358077		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000539421	ENST00000472284		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000539421	ENST00000469640		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000539421	ENST00000408954		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3CDS	ENST00000539421	ENST00000491893		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
intron-3UTR	ENST00000539421	ENST00000466188		TCGA	LD	KIRP	TCGA-UZ-A9PQ-01A	WSCD1	chr17	5792150	+	DAPK1	chr9	90283512	+
In-frame	ENST00000346798	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000346798	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000354192	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000354192	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000348990	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000348990	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000357903	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000357903	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000358918	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000358918	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000359726	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000359726	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000448388	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000448388	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000440126	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000440126	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000439274	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000439274	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
intron-3CDS	ENST00000474136	ENST00000378565		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
intron-3CDS	ENST00000474136	ENST00000378549		TCGA	LD	KIRP	TCGA-UZ-A9PR-01A	APP	chr21	27347383	-	ITM2B	chr13	48827944	+
In-frame	ENST00000205557	ENST00000569600		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
In-frame	ENST00000205557	ENST00000219139		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
5CDS-3UTR	ENST00000205557	ENST00000569683		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-3CDS	ENST00000574094	ENST00000569600		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-3CDS	ENST00000574094	ENST00000219139		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-3UTR	ENST00000574094	ENST00000569683		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-3CDS	ENST00000575728	ENST00000569600		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-3CDS	ENST00000575728	ENST00000219139		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-3UTR	ENST00000575728	ENST00000569683		TCGA	RV	LAML	TCGA-AB-2846-03A	ABCC6	chr16	16253339	-	C16orf70	chr16	67165189	+
intron-5UTR	ENST00000498829	ENST00000216267		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000498829	ENST00000404034		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000498829	ENST00000404760		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000498829	ENST00000457780		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000498829	ENST00000542442		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000498829	ENST00000342989		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000498829	ENST00000459821		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-5UTR	ENST00000400023	ENST00000216267		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-5UTR	ENST00000400023	ENST00000404034		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-5UTR	ENST00000400023	ENST00000404760		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-5UTR	ENST00000400023	ENST00000457780		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-intron	ENST00000400023	ENST00000542442		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-intron	ENST00000400023	ENST00000342989		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-intron	ENST00000400023	ENST00000459821		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000405854	ENST00000216267		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000405854	ENST00000404034		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000405854	ENST00000404760		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000405854	ENST00000457780		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000405854	ENST00000542442		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000405854	ENST00000342989		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000405854	ENST00000459821		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000444628	ENST00000216267		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000444628	ENST00000404034		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000444628	ENST00000404760		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-5UTR	ENST00000444628	ENST00000457780		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000444628	ENST00000542442		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000444628	ENST00000342989		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
intron-intron	ENST00000444628	ENST00000459821		TCGA	RV	LAML	TCGA-AB-2897-03A	C22orf34	chr22	50051053	-	BRD1	chr22	50217979	-
5CDS-5UTR	ENST00000303400	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000303400	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000303400	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000303400	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000505177	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000505177	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000505177	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000505177	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000264750	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000264750	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000264750	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000264750	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000452175	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000452175	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000452175	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000452175	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000514708	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000514708	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000514708	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000514708	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000510794	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000510794	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000510794	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000510794	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000505839	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000505839	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-5UTR	ENST00000505839	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
5CDS-intron	ENST00000505839	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000512289	ENST00000382952		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000512289	ENST00000290921		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000512289	ENST00000510568		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
intron-intron	ENST00000512289	ENST00000515690		TCGA	RV	LAML	TCGA-AB-2811-03B	MAEA	chr4	1316291	+	CTBP1	chr4	1235307	-
In-frame	ENST00000257821	ENST00000262366		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
In-frame	ENST00000257821	ENST00000433375		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000323180	ENST00000262366		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000323180	ENST00000433375		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
In-frame	ENST00000418153	ENST00000262366		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
In-frame	ENST00000418153	ENST00000433375		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000527753	ENST00000262366		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
intron-3CDS	ENST00000527753	ENST00000433375		TCGA	RV	LAML	TCGA-AB-2965-03A	PHF21A	chr11	45967391	-	GLIS2	chr16	4386726	+
5CDS-intron	ENST00000418331	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
5CDS-intron	ENST00000418331	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
5CDS-intron	ENST00000418331	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
5CDS-intron	ENST00000440289	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
5CDS-intron	ENST00000440289	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
5CDS-intron	ENST00000440289	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
intron-intron	ENST00000526550	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
intron-intron	ENST00000526550	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
intron-intron	ENST00000526550	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	PTPRJ	chr11	48002560	+	C2CD2L	chr11	118980814	+
intron-3CDS	ENST00000529600	ENST00000322536		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
intron-3CDS	ENST00000529600	ENST00000526794		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
intron-intron	ENST00000529600	ENST00000534221		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
Frame-shit	ENST00000336702	ENST00000322536		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
Frame-shit	ENST00000336702	ENST00000526794		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
5CDS-intron	ENST00000336702	ENST00000534221		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
Frame-shit	ENST00000528586	ENST00000322536		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
Frame-shit	ENST00000528586	ENST00000526794		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
5CDS-intron	ENST00000528586	ENST00000534221		TCGA	RV	LAML	TCGA-AB-2857-03A	C2CD2L	chr11	118985075	+	DDX10	chr11	108709173	+
3UTR-3CDS	ENST00000461610	ENST00000560699		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
3UTR-3CDS	ENST00000461610	ENST00000305901		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
3UTR-5UTR	ENST00000461610	ENST00000561401		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-3CDS	ENST00000447769	ENST00000560699		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-3CDS	ENST00000447769	ENST00000305901		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-5UTR	ENST00000447769	ENST00000561401		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-3CDS	ENST00000334425	ENST00000560699		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-3CDS	ENST00000334425	ENST00000305901		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-5UTR	ENST00000334425	ENST00000561401		TCGA	RV	LAML	TCGA-AB-2904-03A	GPR141	chr7	37725186	+	ONECUT1	chr15	53050044	-
intron-3CDS	ENST00000523629	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000523629	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000523629	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000523629	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000523629	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000523629	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000523629	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000523629	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000396218	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000396218	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000396218	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000396218	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000396218	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000396218	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5CDS-intron	ENST00000396218	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5CDS-intron	ENST00000396218	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000265814	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000265814	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000265814	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000265814	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000265814	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000265814	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000265814	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000265814	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000360348	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000360348	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000360348	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000360348	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000360348	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000360348	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000360348	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000360348	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000436581	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000436581	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000436581	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000436581	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000436581	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000436581	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000436581	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000436581	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000520724	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000520724	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000520724	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000520724	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000520724	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000520724	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000520724	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000520724	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000518844	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000518844	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000518844	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000518844	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000518844	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
Frame-shit	ENST00000518844	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5CDS-intron	ENST00000518844	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5CDS-intron	ENST00000518844	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000522163	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000522163	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000522163	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000522163	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000522163	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000522163	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-intron	ENST00000522163	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-intron	ENST00000522163	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000422361	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000422361	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000422361	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000422361	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000422361	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000422361	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000422361	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000422361	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000521553	ENST00000344691		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000521553	ENST00000325074		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000521553	ENST00000437180		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000521553	ENST00000300305		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000521553	ENST00000399240		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-3CDS	ENST00000521553	ENST00000486278		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000521553	ENST00000494829		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
intron-intron	ENST00000521553	ENST00000358356		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1T1	chr8	93074774	-	RUNX1	chr21	36231875	-
5UTR-3CDS	ENST00000326181	ENST00000293883		TCGA	RV	LAML	TCGA-AB-2857-03A	TRAF7	chr16	2205859	+	WDR24	chr16	737739	-
5UTR-3CDS	ENST00000326181	ENST00000248142		TCGA	RV	LAML	TCGA-AB-2857-03A	TRAF7	chr16	2205859	+	WDR24	chr16	737739	-
Frame-shit	ENST00000258796	ENST00000402746		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000258796	ENST00000399654		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000258796	ENST00000406869		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000258796	ENST00000265854		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
5CDS-intron	ENST00000258796	ENST00000486340		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000402746		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000399654		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000406869		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000265854		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
5CDS-intron	ENST00000407643	ENST00000486340		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000402746		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000399654		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000406869		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000265854		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-intron	ENST00000403167	ENST00000486340		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000402746		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000399654		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000406869		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000265854		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-intron	ENST00000477439	ENST00000486340		TCGA	RV	LAML	TCGA-AB-2811-03B	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000318560	ENST00000305877		TCGA	RV	LAML	TCGA-AB-2817-03A	ABL1	chr9	133589842	+	BCR	chr22	23595986	+
intron-3CDS	ENST00000318560	ENST00000359540		TCGA	RV	LAML	TCGA-AB-2817-03A	ABL1	chr9	133589842	+	BCR	chr22	23595986	+
intron-intron	ENST00000318560	ENST00000398512		TCGA	RV	LAML	TCGA-AB-2817-03A	ABL1	chr9	133589842	+	BCR	chr22	23595986	+
intron-intron	ENST00000318560	ENST00000436990		TCGA	RV	LAML	TCGA-AB-2817-03A	ABL1	chr9	133589842	+	BCR	chr22	23595986	+
5CDS-intron	ENST00000308595	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000308595	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000308595	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000308595	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000308595	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000308595	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000526285	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000526285	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000526285	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000526285	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000526285	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000526285	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000527176	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000527176	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000527176	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000527176	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000527176	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
intron-intron	ENST00000527176	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2940-03A	ADRBK1	chr11	67054027	+	STAT6	chr12	57496773	-
In-frame	ENST00000369702	ENST00000207157		TCGA	RV	LAML	TCGA-AB-2857-03A	DDX20	chr1	112303470	+	TBX15	chr1	119428139	-
Frame-shit	ENST00000369702	ENST00000369429		TCGA	RV	LAML	TCGA-AB-2857-03A	DDX20	chr1	112303470	+	TBX15	chr1	119428139	-
3UTR-3CDS	ENST00000536167	ENST00000207157		TCGA	RV	LAML	TCGA-AB-2857-03A	DDX20	chr1	112303470	+	TBX15	chr1	119428139	-
3UTR-3CDS	ENST00000536167	ENST00000369429		TCGA	RV	LAML	TCGA-AB-2857-03A	DDX20	chr1	112303470	+	TBX15	chr1	119428139	-
5UTR-3CDS	ENST00000475700	ENST00000207157		TCGA	RV	LAML	TCGA-AB-2857-03A	DDX20	chr1	112303470	+	TBX15	chr1	119428139	-
5UTR-3CDS	ENST00000475700	ENST00000369429		TCGA	RV	LAML	TCGA-AB-2857-03A	DDX20	chr1	112303470	+	TBX15	chr1	119428139	-
intron-5UTR	ENST00000586702	ENST00000586600		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
intron-5UTR	ENST00000586702	ENST00000221554		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
intron-intron	ENST00000586702	ENST00000587019		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000294618	ENST00000586600		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000294618	ENST00000221554		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
5CDS-intron	ENST00000294618	ENST00000587019		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000319867	ENST00000586600		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000319867	ENST00000221554		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
5CDS-intron	ENST00000319867	ENST00000587019		TCGA	RV	LAML	TCGA-AB-2941-03A	DOCK6	chr19	11339616	-	CCDC130	chr19	13862422	+
Frame-shit	ENST00000324932	ENST00000354179		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000439151		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000347982		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000361032		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000324932	ENST00000511258		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000354179		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000439151		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000347982		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000361032		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000359171	ENST00000511258		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000354179		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000439151		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000347982		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000361032		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000355260	ENST00000511258		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000354179		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000439151		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000347982		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000361032		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397004	ENST00000511258		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000354179		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000439151		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000347982		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000361032		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397007	ENST00000511258		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000354179		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000439151		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000347982		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000361032		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-intron	ENST00000488828	ENST00000511258		TCGA	RV	LAML	TCGA-AB-2918-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-5UTR	ENST00000532489	ENST00000246112		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-5UTR	ENST00000532489	ENST00000482627		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-intron	ENST00000532489	ENST00000452088		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-intron	ENST00000532489	ENST00000478073		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-5UTR	ENST00000391851	ENST00000246112		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-5UTR	ENST00000391851	ENST00000482627		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000391851	ENST00000452088		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000391851	ENST00000478073		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-5UTR	ENST00000454376	ENST00000246112		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-5UTR	ENST00000454376	ENST00000482627		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000454376	ENST00000452088		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000454376	ENST00000478073		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-5UTR	ENST00000527866	ENST00000246112		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-5UTR	ENST00000527866	ENST00000482627		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-intron	ENST00000527866	ENST00000452088		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
intron-intron	ENST00000527866	ENST00000478073		TCGA	RV	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2978196	+
5CDS-intron	ENST00000532828	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
5CDS-intron	ENST00000532828	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
5CDS-intron	ENST00000532828	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000531805	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000531805	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000531805	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000312908	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000312908	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000312908	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
5CDS-intron	ENST00000527838	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
5CDS-intron	ENST00000527838	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
5CDS-intron	ENST00000527838	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000586320	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000586320	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000586320	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000534363	ENST00000529600		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000534363	ENST00000336702		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
intron-intron	ENST00000534363	ENST00000528586		TCGA	RV	LAML	TCGA-AB-2857-03A	ZNF585B	chr19	37697942	-	C2CD2L	chr11	118983038	+
Frame-shit	ENST00000299543	ENST00000253506		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
In-frame	ENST00000299543	ENST00000591814		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000397790		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
In-frame	ENST00000299543	ENST00000587635		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000427363		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000542384		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000318065		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000545796		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000592223		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000329101		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000299543	ENST00000586434		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
5CDS-intron	ENST00000299543	ENST00000590172		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000253506		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
In-frame	ENST00000075430	ENST00000591814		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000397790		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
In-frame	ENST00000075430	ENST00000587635		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000427363		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000542384		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000318065		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000545796		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000592223		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000329101		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000075430	ENST00000586434		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
5CDS-intron	ENST00000075430	ENST00000590172		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000253506		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000591814		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000397790		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000587635		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000427363		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000542384		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000318065		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000545796		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000592223		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000329101		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-3CDS	ENST00000587623	ENST00000586434		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
intron-intron	ENST00000587623	ENST00000590172		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77478016	+	NFATC1	chr18	77227450	+
Frame-shit	ENST00000369002	ENST00000441478		TCGA	RV	LAML	TCGA-AB-2901-03A	SEC63	chr6	108197768	-	FIG4	chr6	110106173	+
Frame-shit	ENST00000369002	ENST00000230124		TCGA	RV	LAML	TCGA-AB-2901-03A	SEC63	chr6	108197768	-	FIG4	chr6	110106173	+
5CDS-intron	ENST00000369002	ENST00000368941		TCGA	RV	LAML	TCGA-AB-2901-03A	SEC63	chr6	108197768	-	FIG4	chr6	110106173	+
intron-3CDS	ENST00000460009	ENST00000441478		TCGA	RV	LAML	TCGA-AB-2901-03A	SEC63	chr6	108197768	-	FIG4	chr6	110106173	+
intron-3CDS	ENST00000460009	ENST00000230124		TCGA	RV	LAML	TCGA-AB-2901-03A	SEC63	chr6	108197768	-	FIG4	chr6	110106173	+
intron-intron	ENST00000460009	ENST00000368941		TCGA	RV	LAML	TCGA-AB-2901-03A	SEC63	chr6	108197768	-	FIG4	chr6	110106173	+
In-frame	ENST00000299543	ENST00000357575		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
Frame-shit	ENST00000299543	ENST00000397778		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
Frame-shit	ENST00000299543	ENST00000409073		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
Frame-shit	ENST00000299543	ENST00000590381		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
5CDS-5UTR	ENST00000299543	ENST00000590895		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
In-frame	ENST00000075430	ENST00000357575		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
Frame-shit	ENST00000075430	ENST00000397778		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
Frame-shit	ENST00000075430	ENST00000409073		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
Frame-shit	ENST00000075430	ENST00000590381		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
5CDS-5UTR	ENST00000075430	ENST00000590895		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
intron-3CDS	ENST00000587623	ENST00000357575		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
intron-3CDS	ENST00000587623	ENST00000397778		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
intron-3CDS	ENST00000587623	ENST00000409073		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
intron-3CDS	ENST00000587623	ENST00000590381		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
intron-5UTR	ENST00000587623	ENST00000590895		TCGA	RV	LAML	TCGA-AB-2811-03B	CTDP1	chr18	77464917	+	PQLC1	chr18	77664183	-
3UTR-3UTR	ENST00000591997	ENST00000530167		TCGA	RV	LAML	TCGA-AB-2857-03A	WDR18	chr19	985975	+	H2AFX	chr11	118964971	-
5CDS-3UTR	ENST00000251289	ENST00000530167		TCGA	RV	LAML	TCGA-AB-2857-03A	WDR18	chr19	985975	+	H2AFX	chr11	118964971	-
5CDS-3UTR	ENST00000587001	ENST00000530167		TCGA	RV	LAML	TCGA-AB-2857-03A	WDR18	chr19	985975	+	H2AFX	chr11	118964971	-
In-frame	ENST00000591142	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
In-frame	ENST00000591601	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
Frame-shit	ENST00000309340	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
Frame-shit	ENST00000250896	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
Frame-shit	ENST00000541165	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
In-frame	ENST00000591588	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
Frame-shit	ENST00000588014	ENST00000292363		TCGA	RV	LAML	TCGA-AB-2897-03A	MKNK2	chr19	2041839	-	RNF126	chr19	652884	-
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2999-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-5UTR	ENST00000375300	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000375300	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000375300	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000375300	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000292055	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000292055	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000292055	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000292055	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000375288	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000375288	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000375288	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000375288	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000434315	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000434315	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000434315	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-5UTR	ENST00000434315	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000542607	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000542607	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000542607	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000542607	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000446921	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000446921	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000446921	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000446921	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
intron-5UTR	ENST00000488337	ENST00000528125		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
intron-5UTR	ENST00000488337	ENST00000260276		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
intron-5UTR	ENST00000488337	ENST00000530214		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
intron-5UTR	ENST00000488337	ENST00000529270		TCGA	RV	LAML	TCGA-AB-2832-03A	SIK3	chr11	116968859	-	C11orf1	chr11	111753092	+
5UTR-3CDS	ENST00000216181	ENST00000335762		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399655		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000480911		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399644		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000344100		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399638		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399629		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399597		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000327702		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399621		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399649		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399637		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000402845		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399591		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399641		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000347598		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399606		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399595		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399601		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399603		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399634		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000399617		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-3CDS	ENST00000216181	ENST00000406454		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
5UTR-intron	ENST00000216181	ENST00000491104		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000335762		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399655		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000480911		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399644		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000344100		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399638		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399629		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399597		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000327702		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399621		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399649		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399637		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000402845		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399591		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399641		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000347598		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399606		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399595		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399601		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399603		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399634		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000399617		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000475726	ENST00000406454		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-intron	ENST00000475726	ENST00000491104		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000335762		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399655		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000480911		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399644		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000344100		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399638		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399629		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399597		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000327702		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399621		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399649		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399637		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000402845		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399591		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399641		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000347598		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399606		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399595		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399601		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399603		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399634		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000399617		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-3CDS	ENST00000401701	ENST00000406454		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
intron-intron	ENST00000401701	ENST00000491104		TCGA	RV	LAML	TCGA-AB-2943-03A	MYH9	chr22	36783852	-	CACNA1C	chr12	2224390	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2803-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2841-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2991-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000318560	ENST00000305877		TCGA	RV	LAML	TCGA-AB-2941-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
intron-3CDS	ENST00000318560	ENST00000359540		TCGA	RV	LAML	TCGA-AB-2941-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
intron-intron	ENST00000318560	ENST00000398512		TCGA	RV	LAML	TCGA-AB-2941-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
intron-intron	ENST00000318560	ENST00000436990		TCGA	RV	LAML	TCGA-AB-2941-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2897-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2980-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2982-03B	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3001-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000318560	ENST00000305877		TCGA	RV	LAML	TCGA-AB-2901-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
intron-3CDS	ENST00000318560	ENST00000359540		TCGA	RV	LAML	TCGA-AB-2901-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
intron-intron	ENST00000318560	ENST00000398512		TCGA	RV	LAML	TCGA-AB-2901-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
intron-intron	ENST00000318560	ENST00000436990		TCGA	RV	LAML	TCGA-AB-2901-03A	ABL1	chr9	133589842	+	BCR	chr22	23634728	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000446906	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000446906	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000446906	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000446906	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000446906	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000446906	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377072	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377072	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377072	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377072	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377072	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000377072	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000307729	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000307729	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000307729	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000307729	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000307729	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000307729	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377059	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377059	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377059	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377059	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377059	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000377059	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-intron	ENST00000495130	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-intron	ENST00000377100	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-intron	ENST00000377091	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2855-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2994-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3UTR	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3CDS	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3UTR	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3CDS	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3UTR	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3UTR	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
In-frame	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-3UTR	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-3012-03A	RARA	chr17	38499119	+	PML	chr15	74326819	+
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
In-frame	ENST00000354476	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000390003	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000418533	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000402934	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000404525	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000407925	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	LAML	TCGA-AB-2931-03A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
In-frame	ENST00000354179	ENST00000324932		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000354179	ENST00000359171		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000354179	ENST00000355260		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000354179	ENST00000397004		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000354179	ENST00000397007		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
5CDS-intron	ENST00000354179	ENST00000488828		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000439151	ENST00000324932		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000439151	ENST00000359171		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000439151	ENST00000355260		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000439151	ENST00000397004		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000439151	ENST00000397007		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
5CDS-intron	ENST00000439151	ENST00000488828		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000347982	ENST00000324932		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000347982	ENST00000359171		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000347982	ENST00000355260		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000347982	ENST00000397004		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000347982	ENST00000397007		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
5CDS-intron	ENST00000347982	ENST00000488828		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000361032	ENST00000324932		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000361032	ENST00000359171		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000361032	ENST00000355260		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000361032	ENST00000397004		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000361032	ENST00000397007		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
5CDS-intron	ENST00000361032	ENST00000488828		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000511258	ENST00000324932		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000511258	ENST00000359171		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000511258	ENST00000355260		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000511258	ENST00000397004		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000511258	ENST00000397007		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
intron-intron	ENST00000511258	ENST00000488828		TCGA	RV	LAML	TCGA-AB-2856-03A	NSD1	chr5	176639196	+	NUP98	chr11	3756554	-
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2980-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000340482	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000340482	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000340482	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000340482	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000340482	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000340482	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000225275	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000225275	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000225275	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000225275	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000225275	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000225275	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
intron-intron	ENST00000578493	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
intron-intron	ENST00000578493	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
intron-intron	ENST00000578493	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
intron-intron	ENST00000578493	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
intron-intron	ENST00000578493	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
intron-intron	ENST00000578493	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2991-03A	MPO	chr17	56347217	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
Frame-shit	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
Frame-shit	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
5CDS-intron	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
intron-intron	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2998-03A	RARA	chr17	38487648	+	PML	chr15	74325497	+
3UTR-5UTR	ENST00000578312	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
3UTR-5UTR	ENST00000578312	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
3UTR-5UTR	ENST00000578312	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
3UTR-5UTR	ENST00000578312	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
3UTR-5UTR	ENST00000578312	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
3UTR-5UTR	ENST00000578312	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000262394	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000262394	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000262394	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000262394	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000262394	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000262394	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000579733	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000579733	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000579733	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000579733	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000579733	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000579733	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000583193	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000583193	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000583193	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000583193	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000583193	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000583193	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000581185	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000581185	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000581185	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000581185	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000581185	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000581185	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000427287	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000427287	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000427287	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000427287	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000427287	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000427287	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000348811	ENST00000341165		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000348811	ENST00000422280		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000348811	ENST00000542611		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000348811	ENST00000590996		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000348811	ENST00000389312		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
5CDS-5UTR	ENST00000348811	ENST00000589872		TCGA	RV	LAML	TCGA-AB-2920-03B	WSB1	chr17	25621461	+	NBR1	chr17	41327808	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2892-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000340482	ENST00000354817		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000340482	ENST00000527202		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000340482	ENST00000532502		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000225275	ENST00000354817		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000225275	ENST00000527202		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000225275	ENST00000532502		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
intron-intron	ENST00000578493	ENST00000354817		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
intron-intron	ENST00000578493	ENST00000527202		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
intron-intron	ENST00000578493	ENST00000532502		TCGA	RV	LAML	TCGA-AB-2846-03A	MPO	chr17	56347217	-	FAR1	chr11	13744912	+
In-frame	ENST00000532317	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000547956	ENST00000361319		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000547956	ENST00000218008		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000547956	ENST00000539306		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000549260	ENST00000361319		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000549260	ENST00000218008		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000549260	ENST00000539306		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000303694	ENST00000361319		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000303694	ENST00000218008		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000303694	ENST00000539306		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000546689	ENST00000361319		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000546689	ENST00000218008		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
In-frame	ENST00000546689	ENST00000539306		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
intron-3CDS	ENST00000550711	ENST00000361319		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
intron-3CDS	ENST00000550711	ENST00000218008		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
intron-3CDS	ENST00000550711	ENST00000539306		TCGA	RV	LAML	TCGA-AB-2920-03B	CHST11	chr12	104995769	+	ATP1B4	chrX	119500380	+
5CDS-intron	ENST00000340482	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000340482	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000340482	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000340482	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000340482	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000225275	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000225275	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000225275	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000225275	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000225275	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
intron-intron	ENST00000578493	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
intron-intron	ENST00000578493	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
intron-intron	ENST00000578493	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
intron-intron	ENST00000578493	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
intron-intron	ENST00000578493	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2857-03A	MPO	chr17	56347217	-	TYK2	chr19	10491352	-
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2823-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2846-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-5UTR	ENST00000328111	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000328111	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000328111	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000328111	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000328111	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000328111	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000328111	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000348286	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000348286	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000348286	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000348286	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000348286	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000348286	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000348286	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000353855	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000353855	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000353855	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000353855	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000353855	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000353855	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000353855	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000443239	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000443239	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000443239	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000443239	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000443239	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000443239	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000443239	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000344505	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000344505	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000344505	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000344505	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000344505	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000344505	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000344505	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-5UTR	ENST00000375623	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-3UTR	ENST00000375623	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-5UTR	ENST00000375623	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-5UTR	ENST00000375623	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-5UTR	ENST00000375623	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-5UTR	ENST00000375623	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
intron-intron	ENST00000375623	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000456297	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000456297	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000456297	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000456297	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000456297	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000456297	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000456297	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000201963	ENST00000367182		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-3UTR	ENST00000201963	ENST00000463049		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000201963	ENST00000507825		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000201963	ENST00000454264		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000201963	ENST00000367183		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-5UTR	ENST00000201963	ENST00000367180		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
5CDS-intron	ENST00000201963	ENST00000391947		TCGA	RV	LAML	TCGA-AB-2904-03A	DNMT3B	chr20	31390276	+	MDM4	chr1	204494612	+
In-frame	ENST00000532317	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000446906		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000377072		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000307729		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000377059		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000495130		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000377100		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000377091		TCGA	RV	LAML	TCGA-AB-2849-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21940602	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2862-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2998-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000446906	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000446906	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000446906	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000446906	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000446906	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000446906	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377072	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377072	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377072	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377072	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377072	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000377072	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000307729	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000307729	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000307729	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000307729	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000307729	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000307729	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377059	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377059	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377059	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000377059	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
In-frame	ENST00000377059	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
5CDS-intron	ENST00000377059	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000495130	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-intron	ENST00000495130	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377100	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-intron	ENST00000377100	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000532317		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000526033		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000393346		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000528398		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-3CDS	ENST00000377091	ENST00000356360		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
intron-intron	ENST00000377091	ENST00000528411		TCGA	RV	LAML	TCGA-AB-2849-03A	MLLT10	chr10	21906136	+	PICALM	chr11	85670103	-
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2840-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000412916	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	RV	LAML	TCGA-AB-2889-03A	CBFB	chr16	67116211	+	MYH11	chr16	15814908	-
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2991-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000261267	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000261267	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000261267	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000549690	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000549690	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000549690	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548839	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548839	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548839	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2826-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
In-frame	ENST00000305877	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2817-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2817-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
In-frame	ENST00000398512	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2817-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2817-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
In-frame	ENST00000305877	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2901-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2901-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2901-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2901-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-intron	ENST00000530124	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530124	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530124	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530124	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530124	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000257247	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000257247	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000257247	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000257247	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000257247	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000525875	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000525875	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000525875	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000525875	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
intron-intron	ENST00000525875	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000378024	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000378024	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000378024	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000378024	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000378024	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2835-03A	AHNAK	chr11	62283375	-	TYK2	chr19	10491352	-
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2840-03A	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3UTR	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3UTR	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3UTR	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2841-03B	RARA	chr17	38487648	+	PML	chr15	74326819	+
In-frame	ENST00000395135	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	RV	LAML	TCGA-AB-2823-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000261267	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000261267	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000261267	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000261267	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000261267	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549690	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549690	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549690	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549690	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000549690	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548839	ENST00000264818		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548839	ENST00000524462		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548839	ENST00000525621		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548839	ENST00000529370		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
intron-intron	ENST00000548839	ENST00000529422		TCGA	RV	LAML	TCGA-AB-2954-03A	LYZ	chr12	69748014	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000340482	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000340482	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000340482	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000225275	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000225275	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000225275	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000578493	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000578493	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
intron-intron	ENST00000578493	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2994-03A	MPO	chr17	56347217	-	ANXA1	chr9	75772570	+
In-frame	ENST00000305877	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2941-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2941-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2941-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		TCGA	RV	LAML	TCGA-AB-2941-03A	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000254066	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000254066	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000254066	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
In-frame	ENST00000394089	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000394089	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000394089	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
In-frame	ENST00000425707	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-3UTR	ENST00000425707	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
5CDS-intron	ENST00000425707	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3CDS	ENST00000394086	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3UTR	ENST00000394086	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394086	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3CDS	ENST00000394081	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3UTR	ENST00000394081	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000394081	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3CDS	ENST00000420042	ENST00000395135		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000395132		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000268059		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000354026		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000268058		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000565898		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569477		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569965		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000567543		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000435786		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000436891		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000564428		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000359928		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-3UTR	ENST00000420042	ENST00000563500		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
intron-intron	ENST00000420042	ENST00000569161		TCGA	RV	LAML	TCGA-AB-2994-03A	RARA	chr17	38487648	+	PML	chr15	74326819	+
In-frame	ENST00000344691	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2819-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-intron	ENST00000261267	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000261267	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000261267	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000261267	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000261267	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000261267	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549690	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549690	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549690	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549690	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549690	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549690	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548839	ENST00000300134		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548839	ENST00000538913		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548839	ENST00000543873		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548839	ENST00000556155		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548839	ENST00000537215		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548839	ENST00000454075		TCGA	RV	LAML	TCGA-AB-2873-03A	LYZ	chr12	69748014	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000261267	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000261267	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000261267	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000549690	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000549690	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000549690	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548839	ENST00000257497		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548839	ENST00000376911		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000548839	ENST00000491192		TCGA	RV	LAML	TCGA-AB-2837-03A	LYZ	chr12	69748014	+	ANXA1	chr9	75772570	+
5CDS-5UTR	ENST00000270625	ENST00000596435		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000270625	ENST00000344019		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000270625	ENST00000597551		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000270625	ENST00000204637		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000270625	ENST00000600429		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000270625	ENST00000594009		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000270625	ENST00000595510		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000596435		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000344019		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000597551		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000204637		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000600429		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000594009		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000596873	ENST00000595510		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000596435		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000344019		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000597551		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000204637		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000600429		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000594009		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000594493	ENST00000595510		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000596435		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000344019		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000597551		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000204637		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000600429		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000594009		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-5UTR	ENST00000599561	ENST00000595510		TCGA	RV	LAML	TCGA-AB-2912-03A	RPS11	chr19	50001303	+	FLT3LG	chr19	49977860	+
5CDS-intron	ENST00000261267	ENST00000354185		TCGA	RV	LAML	TCGA-AB-2835-03A	LYZ	chr12	69748014	+	DDX21	chr10	70723858	+
intron-intron	ENST00000549690	ENST00000354185		TCGA	RV	LAML	TCGA-AB-2835-03A	LYZ	chr12	69748014	+	DDX21	chr10	70723858	+
intron-intron	ENST00000548839	ENST00000354185		TCGA	RV	LAML	TCGA-AB-2835-03A	LYZ	chr12	69748014	+	DDX21	chr10	70723858	+
In-frame	ENST00000344691	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2937-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2875-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		TCGA	RV	LAML	TCGA-AB-2886-03A	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000393432	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000393432	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000393432	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000393432	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000393432	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000442819	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000442819	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000442819	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000442819	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000442819	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000442819	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000442819	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000442819	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000442819	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000442819	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000442819	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000442819	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000356731	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000356731	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000356731	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000356731	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000356731	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000356731	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000356731	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000356731	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000356731	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000356731	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000356731	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000356731	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000329433	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000329433	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000329433	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000329433	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000329433	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000329433	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000329433	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000329433	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000329433	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000329433	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000329433	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000329433	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000510411	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000510411	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000510411	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000510411	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000510411	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000510411	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000510411	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000510411	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
In-frame	ENST00000510411	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
Frame-shit	ENST00000510411	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000510411	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5CDS-intron	ENST00000510411	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000511300	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-intron	ENST00000511300	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-intron	ENST00000511300	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000398907		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000398905		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000288319		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000398897		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000398911		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000398910		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000417133		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000442448		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000453032		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-3CDS	ENST00000524180	ENST00000398919		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-intron	ENST00000524180	ENST00000429727		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
5UTR-intron	ENST00000524180	ENST00000485493		TCGA	RV	LAML	TCGA-AB-2814-03A	HNRNPH1	chr5	179047893	-	ERG	chr21	39755845	-
intron-3CDS	ENST00000462274	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000462274	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000462274	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000462274	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000462274	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-intron	ENST00000462274	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000338785	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000338785	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000338785	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000338785	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000338785	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000338785	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000451934	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000451934	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000451934	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000451934	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000451934	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000451934	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000321219	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000321219	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000321219	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000321219	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000321219	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000321219	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000339659	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000339659	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000339659	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000339659	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000339659	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000339659	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398960	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398960	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398960	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000398960	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000398960	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000398960	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398956	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398956	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398956	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000398956	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000398956	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000398956	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000355666		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000399017		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000354749		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000455387	ENST00000479930		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000455387	ENST00000540756		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-intron	ENST00000455387	ENST00000399010		TCGA	LD	LAML	TCGA-AB-2807-03A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2815-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000392474	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000538733	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000337174	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000347034	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000324774	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000545538	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000545538	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000545538	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000545538	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000545538	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000545538	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
In-frame	ENST00000412367	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
In-frame	ENST00000404169	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
In-frame	ENST00000402834	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000446440	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000392473	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000535524	ENST00000377069		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000542973		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000377071		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000536437		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000538046		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	LD	LAML	TCGA-AB-2817-03A	CAMKK2	chr12	121682943	-	KDM2B	chr12	121891147	-
In-frame	ENST00000225724	ENST00000394670		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000225724	ENST00000321233		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000225724	ENST00000394673		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000225724	ENST00000341711		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000225724	ENST00000342555		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000225724	ENST00000577908		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
5CDS-intron	ENST00000225724	ENST00000584416		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000451249	ENST00000394670		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000451249	ENST00000321233		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000451249	ENST00000394673		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000451249	ENST00000341711		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000451249	ENST00000342555		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000451249	ENST00000577908		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
5CDS-intron	ENST00000451249	ENST00000584416		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000467337	ENST00000394670		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000467337	ENST00000321233		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000467337	ENST00000394673		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000467337	ENST00000341711		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000467337	ENST00000342555		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000467337	ENST00000577908		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
5CDS-intron	ENST00000467337	ENST00000584416		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000581721	ENST00000394670		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000581721	ENST00000321233		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000581721	ENST00000394673		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000581721	ENST00000341711		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000581721	ENST00000342555		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
In-frame	ENST00000581721	ENST00000577908		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
5CDS-intron	ENST00000581721	ENST00000584416		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-3CDS	ENST00000579905	ENST00000394670		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-3CDS	ENST00000579905	ENST00000321233		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-3CDS	ENST00000579905	ENST00000394673		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-3CDS	ENST00000579905	ENST00000341711		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-3CDS	ENST00000579905	ENST00000342555		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-3CDS	ENST00000579905	ENST00000577908		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
intron-intron	ENST00000579905	ENST00000584416		TCGA	LD	LAML	TCGA-AB-2820-03A	GOSR1	chr17	28811788	+	ZNF207	chr17	30696314	+
5UTR-3CDS	ENST00000477593	ENST00000471595		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-3CDS	ENST00000477593	ENST00000478469		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-3CDS	ENST00000477593	ENST00000251654		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000483687		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000490504		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000466072		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000482086		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000468777		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000462637		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000469217		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5UTR-intron	ENST00000477593	ENST00000474833		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-3CDS	ENST00000544716	ENST00000471595		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-3CDS	ENST00000544716	ENST00000478469		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-3CDS	ENST00000544716	ENST00000251654		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000483687		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000490504		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000466072		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000482086		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000468777		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000462637		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000469217		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000544716	ENST00000474833		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-3CDS	ENST00000289153	ENST00000471595		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-3CDS	ENST00000289153	ENST00000478469		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-3CDS	ENST00000289153	ENST00000251654		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000483687		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000490504		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000466072		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000482086		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000468777		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000462637		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000469217		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
intron-intron	ENST00000289153	ENST00000474833		TCGA	LD	LAML	TCGA-AB-2823-03A	PIK3CB	chr3	138553537	-	PCCB	chr3	135979321	+
5CDS-intron	ENST00000262646	ENST00000519846		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000262646	ENST00000518592		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000262646	ENST00000325897		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000262646	ENST00000518858		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000531289	ENST00000519846		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000531289	ENST00000518592		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000531289	ENST00000325897		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000531289	ENST00000518858		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000529579	ENST00000519846		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000529579	ENST00000518592		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000529579	ENST00000325897		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
5CDS-intron	ENST00000529579	ENST00000518858		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
intron-intron	ENST00000530071	ENST00000519846		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
intron-intron	ENST00000530071	ENST00000518592		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
intron-intron	ENST00000530071	ENST00000325897		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
intron-intron	ENST00000530071	ENST00000518858		TCGA	LD	LAML	TCGA-AB-2823-03A	RAB2A	chr8	61429812	+	CLVS1	chr8	62044329	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2828-03A	CBFB	chr16	67116242	+	MYH11	chr16	15820911	-
intron-5UTR	ENST00000526417	ENST00000575917		TCGA	LD	LAML	TCGA-AB-2828-03A	NOD2	chr16	50746312	+	RP11-327F22.4	chr16	50818100	-
intron-5UTR	ENST00000526417	ENST00000564510		TCGA	LD	LAML	TCGA-AB-2828-03A	NOD2	chr16	50746312	+	RP11-327F22.4	chr16	50818100	-
intron-5UTR	ENST00000300589	ENST00000575917		TCGA	LD	LAML	TCGA-AB-2828-03A	NOD2	chr16	50746312	+	RP11-327F22.4	chr16	50818100	-
intron-5UTR	ENST00000300589	ENST00000564510		TCGA	LD	LAML	TCGA-AB-2828-03A	NOD2	chr16	50746312	+	RP11-327F22.4	chr16	50818100	-
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2832-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000534358	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000534358	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000534358	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000534358	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000534358	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000534358	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000534358	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000389506	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000354520	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000420751	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2832-03A	KMT2A	chr11	118096459	+	MLLT10	chr10	22537236	+
intron-intron	ENST00000375300	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375300	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375300	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375300	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000292055	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000292055	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000292055	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000292055	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375288	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375288	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375288	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000375288	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000434315	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000434315	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000434315	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000434315	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000542607	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000542607	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000542607	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000542607	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000446921	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000446921	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000446921	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000446921	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000488337	ENST00000528125		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000488337	ENST00000260276		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000488337	ENST00000530214		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
intron-intron	ENST00000488337	ENST00000529270		TCGA	LD	LAML	TCGA-AB-2832-03A	SIK3	chr11	118096459	-	C11orf1	chr10	22537236	+
In-frame	ENST00000534358	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
In-frame	ENST00000534358	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
In-frame	ENST00000389506	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
In-frame	ENST00000389506	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
In-frame	ENST00000354520	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
In-frame	ENST00000354520	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
intron-3CDS	ENST00000420751	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
intron-3CDS	ENST00000420751	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2834-03A	KMT2A	chr11	118344549	+	ELL	chr19	18561380	-
Frame-shit	ENST00000430627	ENST00000583610		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000430627	ENST00000394294		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000430627	ENST00000264658		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000430627	ENST00000577399		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000447079	ENST00000583610		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000447079	ENST00000394294		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000447079	ENST00000264658		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
Frame-shit	ENST00000447079	ENST00000577399		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000559545	ENST00000583610		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000559545	ENST00000394294		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000559545	ENST00000264658		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000559545	ENST00000577399		TCGA	LD	LAML	TCGA-AB-2839-03A	CDK12	chr17	37628016	+	FBXL20	chr17	37499494	-
intron-3UTR	ENST00000579913	ENST00000339474		TCGA	LD	LAML	TCGA-AB-2839-03A	LRRC37A4P	chr17	43585420	-	LRRC37A3	chr17	62850589	-
intron-3UTR	ENST00000579913	ENST00000584306		TCGA	LD	LAML	TCGA-AB-2839-03A	LRRC37A4P	chr17	43585420	-	LRRC37A3	chr17	62850589	-
intron-3UTR	ENST00000579913	ENST00000400877		TCGA	LD	LAML	TCGA-AB-2839-03A	LRRC37A4P	chr17	43585420	-	LRRC37A3	chr17	62850589	-
intron-3UTR	ENST00000579913	ENST00000334962		TCGA	LD	LAML	TCGA-AB-2839-03A	LRRC37A4P	chr17	43585420	-	LRRC37A3	chr17	62850589	-
intron-3UTR	ENST00000579913	ENST00000319651		TCGA	LD	LAML	TCGA-AB-2839-03A	LRRC37A4P	chr17	43585420	-	LRRC37A3	chr17	62850589	-
intron-intron	ENST00000579913	ENST00000577487		TCGA	LD	LAML	TCGA-AB-2839-03A	LRRC37A4P	chr17	43585420	-	LRRC37A3	chr17	62850589	-
Frame-shit	ENST00000395135	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000395135	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000395132	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000395132	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268059	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268059	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000354026	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000354026	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268058	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268058	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000565898	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000565898	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569477	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569477	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000567543	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000567543	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000435786	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000435786	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000564428	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000564428	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000359928	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000359928	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000563500	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000563500	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-3CDS	ENST00000569161	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-3CDS	ENST00000569161	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2841-03B	PML	chr15	74317268	+	RARA	chr17	38504568	+
intron-intron	ENST00000534358	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000389506	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000354520	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000420751	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2842-03A	KMT2A	chr11	118094640	+	MLLT10	chr10	22453081	+
intron-intron	ENST00000534358	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000534358	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000389506	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000389506	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000354520	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000354520	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000420751	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
intron-intron	ENST00000420751	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2844-03A	KMT2A	chr11	118094640	+	ELL	chr19	18798348	-
5CDS-3UTR	ENST00000261267	ENST00000369980		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000261267	ENST00000369974		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000261267	ENST00000393682		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-5UTR	ENST00000261267	ENST00000477274		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-intron	ENST00000261267	ENST00000429936		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-intron	ENST00000261267	ENST00000393687		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000549690	ENST00000369980		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000549690	ENST00000369974		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000549690	ENST00000393682		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-5UTR	ENST00000549690	ENST00000477274		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-intron	ENST00000549690	ENST00000429936		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-intron	ENST00000549690	ENST00000393687		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000548839	ENST00000369980		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000548839	ENST00000369974		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-3UTR	ENST00000548839	ENST00000393682		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-5UTR	ENST00000548839	ENST00000477274		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-intron	ENST00000548839	ENST00000429936		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
5CDS-intron	ENST00000548839	ENST00000393687		TCGA	LD	LAML	TCGA-AB-2844-03A	LYZ	chr12	69742294	+	IRAK1	chrX	153276193	-
intron-3CDS	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
In-frame	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2846-03A	CBFB	chr16	67063342	+	MYH11	chr16	15811013	-
intron-3UTR	ENST00000308127	ENST00000398645		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308127	ENST00000529006		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308127	ENST00000526258		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308127	ENST00000308783		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308127	ENST00000530342		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308298	ENST00000398645		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308298	ENST00000529006		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308298	ENST00000526258		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308298	ENST00000308783		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000308298	ENST00000530342		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000376757	ENST00000398645		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000376757	ENST00000529006		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000376757	ENST00000526258		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000376757	ENST00000308783		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000376757	ENST00000530342		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000532181	ENST00000398645		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000532181	ENST00000529006		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000532181	ENST00000526258		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000532181	ENST00000308783		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3UTR	ENST00000532181	ENST00000530342		TCGA	LD	LAML	TCGA-AB-2847-03A	SSH3	chr11	67074459	+	KDM2A	chr11	67022759	+
intron-3CDS	ENST00000264235	ENST00000286827		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-3CDS	ENST00000264235	ENST00000541036		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-5UTR	ENST00000264235	ENST00000469412		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-3CDS	ENST00000316626	ENST00000286827		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-3CDS	ENST00000316626	ENST00000541036		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-5UTR	ENST00000316626	ENST00000469412		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-3CDS	ENST00000473886	ENST00000286827		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-3CDS	ENST00000473886	ENST00000541036		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
intron-5UTR	ENST00000473886	ENST00000469412		TCGA	LD	LAML	TCGA-AB-2849-03A	GSK3B	chr3	119721041	-	TIAM1	chr21	32598160	-
In-frame	ENST00000532317	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000532317	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000532317	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000526033	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000526033	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000393346	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000393346	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
Frame-shit	ENST00000528398	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000528398	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000356360	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
5CDS-intron	ENST00000356360	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-3CDS	ENST00000528411	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
intron-intron	ENST00000528411	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2849-03A	PICALM	chr11	85692172	-	MLLT10	chr10	21940602	+
In-frame	ENST00000380958	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
In-frame	ENST00000380958	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
In-frame	ENST00000380958	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
5CDS-intron	ENST00000380958	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
In-frame	ENST00000399613	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
In-frame	ENST00000399613	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
In-frame	ENST00000399613	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
5CDS-intron	ENST00000399613	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-intron	ENST00000282391	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
intron-intron	ENST00000483842	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2853-03A	PAN3	chr13	28794515	+	FLT3	chr13	28644749	-
5CDS-intron	ENST00000532317	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000532317	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000532317	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000532317	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000532317	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000532317	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000532317	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000526033	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000393346	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000528398	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
5CDS-intron	ENST00000356360	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
intron-intron	ENST00000528411	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2855-03A	PICALM	chr11	85685751	-	MLLT10	chr10	21949952	+
Frame-shit	ENST00000324932	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000324932	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000359171	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000355260	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397004	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397007	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-intron	ENST00000488828	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2856-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000532489	ENST00000246112		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-3CDS	ENST00000532489	ENST00000482627		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-5UTR	ENST00000532489	ENST00000452088		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-intron	ENST00000532489	ENST00000478073		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
In-frame	ENST00000391851	ENST00000246112		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000391851	ENST00000482627		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000391851	ENST00000452088		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000391851	ENST00000478073		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
In-frame	ENST00000454376	ENST00000246112		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
Frame-shit	ENST00000454376	ENST00000482627		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
5CDS-5UTR	ENST00000454376	ENST00000452088		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
5CDS-intron	ENST00000454376	ENST00000478073		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-3CDS	ENST00000527866	ENST00000246112		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-3CDS	ENST00000527866	ENST00000482627		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-5UTR	ENST00000527866	ENST00000452088		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
intron-intron	ENST00000527866	ENST00000478073		TCGA	LD	LAML	TCGA-AB-2857-03A	PRMT1	chr19	50180573	+	TLE6	chr19	2980098	+
3UTR-intron	ENST00000591997	ENST00000530167		TCGA	LD	LAML	TCGA-AB-2857-03A	WDR18	chr19	985975	+	H2AFX	chr11	118835681	-
5CDS-intron	ENST00000251289	ENST00000530167		TCGA	LD	LAML	TCGA-AB-2857-03A	WDR18	chr19	985975	+	H2AFX	chr11	118835681	-
5CDS-intron	ENST00000587001	ENST00000530167		TCGA	LD	LAML	TCGA-AB-2857-03A	WDR18	chr19	985975	+	H2AFX	chr11	118835681	-
intron-3CDS	ENST00000344691	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000344691	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000344691	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000344691	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000344691	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000344691	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000344691	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000344691	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000344691	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000344691	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000325074	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000325074	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000325074	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000325074	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000437180	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000437180	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000437180	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000437180	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000300305	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000300305	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000300305	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000300305	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000399240	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000399240	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000399240	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000399240	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000486278	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000486278	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000486278	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000486278	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000494829	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000494829	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000494829	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000494829	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3CDS	ENST00000358356	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000358356	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000358356	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-intron	ENST00000358356	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2858-03A	RUNX1	chr21	36260514	-	RUNX1T1	chr8	93017453	-
intron-3UTR	ENST00000368985	ENST00000312239		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-intron	ENST00000368985	ENST00000487117		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-intron	ENST00000368985	ENST00000375000		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-3UTR	ENST00000368985	ENST00000375003		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-3UTR	ENST00000448301	ENST00000312239		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-intron	ENST00000448301	ENST00000487117		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-intron	ENST00000448301	ENST00000375000		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-3UTR	ENST00000448301	ENST00000375003		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-3UTR	ENST00000480760	ENST00000312239		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-intron	ENST00000480760	ENST00000487117		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-intron	ENST00000480760	ENST00000375000		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
intron-3UTR	ENST00000480760	ENST00000375003		TCGA	LD	LAML	TCGA-AB-2868-03A	CTSS	chr1	150724036	-	HP1BP3	chr1	21069900	-
5UTR-3CDS	ENST00000394084	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394084	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394084	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394084	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
3UTR-3CDS	ENST00000469528	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
3UTR-intron	ENST00000469528	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
3UTR-intron	ENST00000469528	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
3UTR-intron	ENST00000469528	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000394105	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394105	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394105	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394105	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000265956	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000265956	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000265956	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000265956	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000394104	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394104	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394104	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394104	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000470056	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000470056	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000470056	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000470056	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000394083	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394083	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394083	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000394083	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000495955	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000495955	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000495955	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000495955	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-3CDS	ENST00000297933	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000297933	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000297933	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
5UTR-intron	ENST00000297933	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
intron-3CDS	ENST00000312123	ENST00000538962		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
intron-intron	ENST00000312123	ENST00000309195		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
intron-intron	ENST00000312123	ENST00000407693		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
intron-intron	ENST00000312123	ENST00000238248		TCGA	LD	LAML	TCGA-AB-2868-03A	GAPVD1	chr9	128024238	+	PTGR1	chr9	114312079	-
3UTR-3CDS	ENST00000564580	ENST00000286122		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-3CDS	ENST00000564580	ENST00000355163		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-3CDS	ENST00000564580	ENST00000479780		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-3CDS	ENST00000564580	ENST00000393208		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-3CDS	ENST00000564580	ENST00000355022		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-3CDS	ENST00000564580	ENST00000538234		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-3CDS	ENST00000564580	ENST00000393207		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
3UTR-intron	ENST00000564580	ENST00000481948		TCGA	LD	LAML	TCGA-AB-2868-03A	RRN3P2	chr16	29107476	+	BANP	chr16	88014681	+
In-frame	ENST00000395135	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000395132	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000395132	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000567543	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000567543	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000359928	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000359928	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	LD	LAML	TCGA-AB-2872-03A	PML	chr15	74325755	+	RARA	chr17	38504568	+
5CDS-3UTR	ENST00000601521	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000601521	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-intron	ENST00000601521	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000598098	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000598098	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-intron	ENST00000598098	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000598495	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000598495	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-intron	ENST00000598495	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000196551	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000196551	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-intron	ENST00000196551	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000596046	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-3UTR	ENST00000596046	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
5CDS-intron	ENST00000596046	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS5	chr19	58905918	+	MPO	chr17	56347363	-
intron-5UTR	ENST00000396651	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
intron-5UTR	ENST00000396651	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
intron-intron	ENST00000396651	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
intron-5UTR	ENST00000372209	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
intron-5UTR	ENST00000372209	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
intron-intron	ENST00000372209	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
3UTR-5UTR	ENST00000485390	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
3UTR-5UTR	ENST00000485390	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
3UTR-intron	ENST00000485390	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2874-03A	RPS8	chr1	45241581	+	MPO	chr17	56358272	-
3UTR-3UTR	ENST00000261267	ENST00000389467		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-3UTR	ENST00000261267	ENST00000446231		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-intron	ENST00000261267	ENST00000565224		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-intron	ENST00000261267	ENST00000567737		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-3UTR	ENST00000549690	ENST00000389467		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-3UTR	ENST00000549690	ENST00000446231		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-intron	ENST00000549690	ENST00000565224		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
3UTR-intron	ENST00000549690	ENST00000567737		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
intron-3UTR	ENST00000548839	ENST00000389467		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
intron-3UTR	ENST00000548839	ENST00000446231		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
intron-intron	ENST00000548839	ENST00000565224		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
intron-intron	ENST00000548839	ENST00000567737		TCGA	LD	LAML	TCGA-AB-2875-03A	LYZ	chr12	69747265	+	SMG1	chr16	18819127	-
In-frame	ENST00000176763	ENST00000379516		TCGA	LD	LAML	TCGA-AB-2875-03A	STK10	chr5	171509329	-	SNX2	chr5	122153043	+
In-frame	ENST00000176763	ENST00000514949		TCGA	LD	LAML	TCGA-AB-2875-03A	STK10	chr5	171509329	-	SNX2	chr5	122153043	+
5CDS-3UTR	ENST00000176763	ENST00000510372		TCGA	LD	LAML	TCGA-AB-2875-03A	STK10	chr5	171509329	-	SNX2	chr5	122153043	+
intron-3CDS	ENST00000517775	ENST00000379516		TCGA	LD	LAML	TCGA-AB-2875-03A	STK10	chr5	171509329	-	SNX2	chr5	122153043	+
intron-3CDS	ENST00000517775	ENST00000514949		TCGA	LD	LAML	TCGA-AB-2875-03A	STK10	chr5	171509329	-	SNX2	chr5	122153043	+
intron-3UTR	ENST00000517775	ENST00000510372		TCGA	LD	LAML	TCGA-AB-2875-03A	STK10	chr5	171509329	-	SNX2	chr5	122153043	+
3UTR-3UTR	ENST00000311528	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-3UTR	ENST00000311528	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-intron	ENST00000311528	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
intron-3UTR	ENST00000567815	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
intron-3UTR	ENST00000567815	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
intron-intron	ENST00000567815	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-3UTR	ENST00000452368	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-3UTR	ENST00000452368	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-intron	ENST00000452368	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-3UTR	ENST00000393099	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-3UTR	ENST00000393099	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
3UTR-intron	ENST00000393099	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2879-03A	RPL13	chr16	89629841	+	MPO	chr17	56347365	-
intron-3CDS	ENST00000487917	ENST00000498907		TCGA	LD	LAML	TCGA-AB-2880-03A	ANAPC2	chr9	140074958	-	CEBPA	chr19	33792417	-
intron-3CDS	ENST00000323927	ENST00000498907		TCGA	LD	LAML	TCGA-AB-2880-03A	ANAPC2	chr9	140074958	-	CEBPA	chr19	33792417	-
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2881-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
3UTR-3CDS	ENST00000325167	ENST00000537330		TCGA	LD	LAML	TCGA-AB-2882-03A	CHMP6	chr17	78973194	+	RPTOR	chr17	78831589	+
3UTR-intron	ENST00000325167	ENST00000570891		TCGA	LD	LAML	TCGA-AB-2882-03A	CHMP6	chr17	78973194	+	RPTOR	chr17	78831589	+
3UTR-intron	ENST00000325167	ENST00000306801		TCGA	LD	LAML	TCGA-AB-2882-03A	CHMP6	chr17	78973194	+	RPTOR	chr17	78831589	+
3UTR-intron	ENST00000325167	ENST00000544334		TCGA	LD	LAML	TCGA-AB-2882-03A	CHMP6	chr17	78973194	+	RPTOR	chr17	78831589	+
3UTR-3UTR	ENST00000325167	ENST00000575542		TCGA	LD	LAML	TCGA-AB-2882-03A	CHMP6	chr17	78973194	+	RPTOR	chr17	78831589	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2884-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2888-03B	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000367160	ENST00000367142		TCGA	LD	LAML	TCGA-AB-2888-03B	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000367160	ENST00000464938		TCGA	LD	LAML	TCGA-AB-2888-03B	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
Frame-shit	ENST00000367161	ENST00000367142		TCGA	LD	LAML	TCGA-AB-2888-03B	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000367161	ENST00000464938		TCGA	LD	LAML	TCGA-AB-2888-03B	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
Frame-shit	ENST00000367162	ENST00000367142		TCGA	LD	LAML	TCGA-AB-2888-03B	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000367162	ENST00000464938		TCGA	LD	LAML	TCGA-AB-2888-03B	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5UTR-3CDS	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
5UTR-3CDS	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
5UTR-3CDS	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
5UTR-3CDS	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
5UTR-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
In-frame	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2889-03A	CBFB	chr16	67070555	+	MYH11	chr16	15814832	-
intron-3UTR	ENST00000316292	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000316292	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-intron	ENST00000316292	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000491404	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000491404	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-intron	ENST00000491404	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000309268	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000309268	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-intron	ENST00000309268	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000331523	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-3UTR	ENST00000331523	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
intron-intron	ENST00000331523	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2889-03A	EEF1A1	chr6	74229644	-	MPO	chr17	56347241	-
3UTR-3CDS	ENST00000268164	ENST00000390240		TCGA	LD	LAML	TCGA-AB-2891-03A	ST8SIA2	chr15	93007955	+	IGKJ3	chr2	89160767	-
intron-3CDS	ENST00000539113	ENST00000390240		TCGA	LD	LAML	TCGA-AB-2891-03A	ST8SIA2	chr15	93007955	+	IGKJ3	chr2	89160767	-
Frame-shit	ENST00000406337	ENST00000262367		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
Frame-shit	ENST00000406337	ENST00000382070		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
In-frame	ENST00000265713	ENST00000262367		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
In-frame	ENST00000265713	ENST00000382070		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
In-frame	ENST00000396930	ENST00000262367		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
In-frame	ENST00000396930	ENST00000382070		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
intron-3CDS	ENST00000485568	ENST00000262367		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
intron-3CDS	ENST00000485568	ENST00000382070		TCGA	LD	LAML	TCGA-AB-2910-03A	KAT6A	chr8	41794774	-	CREBBP	chr16	3901010	-
In-frame	ENST00000534358	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
In-frame	ENST00000534358	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
In-frame	ENST00000389506	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
In-frame	ENST00000389506	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
intron-3CDS	ENST00000354520	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
intron-3CDS	ENST00000354520	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
intron-3CDS	ENST00000420751	ENST00000262809		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
intron-3CDS	ENST00000420751	ENST00000596124		TCGA	LD	LAML	TCGA-AB-2911-03A	KMT2A	chr11	118355690	+	ELL	chr19	18569139	-
intron-intron	ENST00000424807	ENST00000391736		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000424807	ENST00000461839		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000424807	ENST00000270452		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000424807	ENST00000430952		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000424807	ENST00000391734		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000424807	ENST00000391733		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000391750	ENST00000391736		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000391750	ENST00000461839		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000391750	ENST00000270452		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000391750	ENST00000430952		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000391750	ENST00000391734		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000391750	ENST00000391733		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000346401	ENST00000391736		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000346401	ENST00000461839		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000346401	ENST00000270452		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000346401	ENST00000430952		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000346401	ENST00000391734		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000346401	ENST00000391733		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000245620	ENST00000391736		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000245620	ENST00000461839		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000245620	ENST00000270452		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000245620	ENST00000430952		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000245620	ENST00000391734		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000245620	ENST00000391733		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000407860	ENST00000391736		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000407860	ENST00000461839		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000407860	ENST00000270452		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000407860	ENST00000430952		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000407860	ENST00000391734		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000407860	ENST00000391733		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000469273	ENST00000391736		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000469273	ENST00000461839		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000469273	ENST00000270452		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000469273	ENST00000430952		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000469273	ENST00000391734		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
intron-intron	ENST00000469273	ENST00000391733		TCGA	LD	LAML	TCGA-AB-2911-03A	LILRB3	chr19	54722251	-	LILRB4	chr19	55177916	+
3UTR-3UTR	ENST00000261267	ENST00000389467		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-3UTR	ENST00000261267	ENST00000446231		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-intron	ENST00000261267	ENST00000565224		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-intron	ENST00000261267	ENST00000567737		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-3UTR	ENST00000549690	ENST00000389467		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-3UTR	ENST00000549690	ENST00000446231		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-intron	ENST00000549690	ENST00000565224		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
3UTR-intron	ENST00000549690	ENST00000567737		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
intron-3UTR	ENST00000548839	ENST00000389467		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
intron-3UTR	ENST00000548839	ENST00000446231		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
intron-intron	ENST00000548839	ENST00000565224		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
intron-intron	ENST00000548839	ENST00000567737		TCGA	LD	LAML	TCGA-AB-2911-03A	LYZ	chr12	69747259	+	SMG1	chr16	18819133	-
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2914-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5UTR-3CDS	ENST00000466152	ENST00000327946		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5UTR-intron	ENST00000466152	ENST00000536331		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5UTR-intron	ENST00000466152	ENST00000552278		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
In-frame	ENST00000371588	ENST00000327946		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5CDS-intron	ENST00000371588	ENST00000536331		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5CDS-intron	ENST00000371588	ENST00000552278		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
In-frame	ENST00000371582	ENST00000327946		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5CDS-intron	ENST00000371582	ENST00000536331		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5CDS-intron	ENST00000371582	ENST00000552278		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
In-frame	ENST00000371583	ENST00000327946		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5CDS-intron	ENST00000371583	ENST00000536331		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
5CDS-intron	ENST00000371583	ENST00000552278		TCGA	LD	LAML	TCGA-AB-2915-03A	DPM1	chr20	49571723	-	GRID1	chr10	87675996	-
intron-intron	ENST00000215832	ENST00000291386		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-3UTR	ENST00000215832	ENST00000359060		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-intron	ENST00000398822	ENST00000291386		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-3UTR	ENST00000398822	ENST00000359060		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-intron	ENST00000544786	ENST00000291386		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-3UTR	ENST00000544786	ENST00000359060		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-intron	ENST00000491588	ENST00000291386		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
intron-3UTR	ENST00000491588	ENST00000359060		TCGA	LD	LAML	TCGA-AB-2915-03A	MAPK1	chr22	22115132	-	SSU72	chr1	1497956	-
5CDS-intron	ENST00000344691	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000344691	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000325074	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000437180	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000300305	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000399240	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-5UTR	ENST00000399240	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000486278	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-5UTR	ENST00000486278	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
intron-5UTR	ENST00000494829	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000264674		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000392736		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000464456		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000472280		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000494292		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000468789		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000460814		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000433243		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000358356	ENST00000485957		TCGA	LD	LAML	TCGA-AB-2915-03A	RUNX1	chr21	36206707	-	MECOM	chr3	169099312	-
Frame-shit	ENST00000535572	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000535572	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000535572	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000535572	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000535572	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000535572	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000535572	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000535572	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000537687	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000537687	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000537687	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000537687	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000537687	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000537687	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000537687	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000537687	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000315939	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000315939	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000315939	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000315939	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000315939	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000315939	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000315939	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000315939	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000447667	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000447667	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000447667	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000447667	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000447667	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000447667	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000447667	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000447667	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000530271	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000530271	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000530271	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000530271	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000530271	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000530271	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000530271	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000530271	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000540360	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000540360	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000540360	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000540360	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000540360	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000540360	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000540360	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000540360	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000340908	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000340908	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000340908	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000340908	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000340908	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000340908	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000340908	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
5CDS-intron	ENST00000340908	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000574564	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000574564	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000574564	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-3CDS	ENST00000574564	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000574564	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000574564	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000574564	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
intron-intron	ENST00000574564	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2915-03A	WNK1	chr12	1005621	+	RAD52	chr12	1025841	-
Frame-shit	ENST00000381527	ENST00000340473		TCGA	LD	LAML	TCGA-AB-2918-03A	CDK8	chr13	26828906	+	GTF2F2	chr13	45781559	+
5CDS-3UTR	ENST00000381527	ENST00000494087		TCGA	LD	LAML	TCGA-AB-2918-03A	CDK8	chr13	26828906	+	GTF2F2	chr13	45781559	+
Frame-shit	ENST00000536792	ENST00000340473		TCGA	LD	LAML	TCGA-AB-2918-03A	CDK8	chr13	26828906	+	GTF2F2	chr13	45781559	+
5CDS-3UTR	ENST00000536792	ENST00000494087		TCGA	LD	LAML	TCGA-AB-2918-03A	CDK8	chr13	26828906	+	GTF2F2	chr13	45781559	+
intron-3CDS	ENST00000480323	ENST00000340473		TCGA	LD	LAML	TCGA-AB-2918-03A	CDK8	chr13	26828906	+	GTF2F2	chr13	45781559	+
intron-3UTR	ENST00000480323	ENST00000494087		TCGA	LD	LAML	TCGA-AB-2918-03A	CDK8	chr13	26828906	+	GTF2F2	chr13	45781559	+
Frame-shit	ENST00000324932	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000324932	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000359171	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000355260	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397004	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397007	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-intron	ENST00000488828	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2918-03A	NUP98	chr11	3765739	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2920-03B	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	LD	LAML	TCGA-AB-2920-03B	FGFR3	chr4	1807798	+	TACC3	chr4	1729971	+
intron-intron	ENST00000509603	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000509603	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000509603	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000319524	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000319524	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000319524	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000268763	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000268763	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000268763	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000398988	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000398988	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000398988	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000581975	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000581975	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000581975	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000582410	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000582410	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000582410	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000578981	ENST00000371130		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000578981	ENST00000422452		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000578981	ENST00000461429		TCGA	LD	LAML	TCGA-AB-2920-03B	KSR1	chr12	26030667	+	TENM1	chrX	122829517	-
intron-intron	ENST00000309859	ENST00000321728		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-3UTR	ENST00000309859	ENST00000303531		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000309859	ENST00000482000		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000309859	ENST00000498058		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000567468	ENST00000321728		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-3UTR	ENST00000567468	ENST00000303531		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000567468	ENST00000482000		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000567468	ENST00000498058		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000569182	ENST00000321728		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-3UTR	ENST00000569182	ENST00000303531		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000569182	ENST00000482000		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
intron-intron	ENST00000569182	ENST00000498058		TCGA	LD	LAML	TCGA-AB-2929-03A	GGA2	chr16	23478534	-	PRKCB	chr16	24230943	+
Frame-shit	ENST00000324932	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000324932	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000324932	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000359171	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000359171	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000355260	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000355260	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397004	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397004	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
Frame-shit	ENST00000397007	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-intron	ENST00000397007	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000354179		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000439151		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000347982		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-3CDS	ENST00000488828	ENST00000361032		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
intron-intron	ENST00000488828	ENST00000511258		TCGA	LD	LAML	TCGA-AB-2930-03A	NUP98	chr11	3774546	-	NSD1	chr5	176662822	+
5CDS-3UTR	ENST00000373189	ENST00000335350		TCGA	LD	LAML	TCGA-AB-2932-03A	SLC29A3	chr10	73111407	+	UNC5B	chr10	73062316	+
5CDS-3UTR	ENST00000373189	ENST00000373192		TCGA	LD	LAML	TCGA-AB-2932-03A	SLC29A3	chr10	73111407	+	UNC5B	chr10	73062316	+
intron-3UTR	ENST00000469204	ENST00000335350		TCGA	LD	LAML	TCGA-AB-2932-03A	SLC29A3	chr10	73111407	+	UNC5B	chr10	73062316	+
intron-3UTR	ENST00000469204	ENST00000373192		TCGA	LD	LAML	TCGA-AB-2932-03A	SLC29A3	chr10	73111407	+	UNC5B	chr10	73062316	+
In-frame	ENST00000405315	ENST00000595090		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
In-frame	ENST00000405315	ENST00000601968		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
5CDS-intron	ENST00000405315	ENST00000598768		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
5CDS-intron	ENST00000405315	ENST00000413176		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
In-frame	ENST00000407032	ENST00000595090		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
In-frame	ENST00000407032	ENST00000601968		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
5CDS-intron	ENST00000407032	ENST00000598768		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
5CDS-intron	ENST00000407032	ENST00000413176		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
intron-3CDS	ENST00000485798	ENST00000595090		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
intron-3CDS	ENST00000485798	ENST00000601968		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
intron-intron	ENST00000485798	ENST00000598768		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
intron-intron	ENST00000485798	ENST00000413176		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
In-frame	ENST00000263273	ENST00000595090		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
In-frame	ENST00000263273	ENST00000601968		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
5CDS-intron	ENST00000263273	ENST00000598768		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
5CDS-intron	ENST00000263273	ENST00000413176		TCGA	LD	LAML	TCGA-AB-2935-03A	NUCB1	chr19	49407711	+	RUVBL2	chr19	49513033	+
intron-5UTR	ENST00000274242	ENST00000468202		TCGA	LD	LAML	TCGA-AB-2937-03A	RPL37	chr5	40830940	-	RP1-228P16.1	chr12	48448946	-
intron-5UTR	ENST00000509877	ENST00000468202		TCGA	LD	LAML	TCGA-AB-2937-03A	RPL37	chr5	40830940	-	RP1-228P16.1	chr12	48448946	-
intron-5UTR	ENST00000504562	ENST00000468202		TCGA	LD	LAML	TCGA-AB-2937-03A	RPL37	chr5	40830940	-	RP1-228P16.1	chr12	48448946	-
intron-5UTR	ENST00000508493	ENST00000468202		TCGA	LD	LAML	TCGA-AB-2937-03A	RPL37	chr5	40830940	-	RP1-228P16.1	chr12	48448946	-
intron-5UTR	ENST00000322357	ENST00000570896		TCGA	LD	LAML	TCGA-AB-2938-03A	ZBTB7A	chr19	4055117	-	TNK1	chr17	7286169	+
intron-5UTR	ENST00000322357	ENST00000576812		TCGA	LD	LAML	TCGA-AB-2938-03A	ZBTB7A	chr19	4055117	-	TNK1	chr17	7286169	+
intron-5UTR	ENST00000322357	ENST00000311668		TCGA	LD	LAML	TCGA-AB-2938-03A	ZBTB7A	chr19	4055117	-	TNK1	chr17	7286169	+
intron-5UTR	ENST00000601588	ENST00000570896		TCGA	LD	LAML	TCGA-AB-2938-03A	ZBTB7A	chr19	4055117	-	TNK1	chr17	7286169	+
intron-5UTR	ENST00000601588	ENST00000576812		TCGA	LD	LAML	TCGA-AB-2938-03A	ZBTB7A	chr19	4055117	-	TNK1	chr17	7286169	+
intron-5UTR	ENST00000601588	ENST00000311668		TCGA	LD	LAML	TCGA-AB-2938-03A	ZBTB7A	chr19	4055117	-	TNK1	chr17	7286169	+
Frame-shit	ENST00000284049	ENST00000361445		TCGA	LD	LAML	TCGA-AB-2939-03A	CHD1	chr5	98199112	-	MTOR	chr1	11273623	-
5CDS-intron	ENST00000284049	ENST00000376838		TCGA	LD	LAML	TCGA-AB-2939-03A	CHD1	chr5	98199112	-	MTOR	chr1	11273623	-
5CDS-intron	ENST00000284049	ENST00000495435		TCGA	LD	LAML	TCGA-AB-2939-03A	CHD1	chr5	98199112	-	MTOR	chr1	11273623	-
Frame-shit	ENST00000511067	ENST00000361445		TCGA	LD	LAML	TCGA-AB-2939-03A	CHD1	chr5	98199112	-	MTOR	chr1	11273623	-
5CDS-intron	ENST00000511067	ENST00000376838		TCGA	LD	LAML	TCGA-AB-2939-03A	CHD1	chr5	98199112	-	MTOR	chr1	11273623	-
5CDS-intron	ENST00000511067	ENST00000495435		TCGA	LD	LAML	TCGA-AB-2939-03A	CHD1	chr5	98199112	-	MTOR	chr1	11273623	-
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
In-frame	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
In-frame	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
In-frame	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
In-frame	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
5CDS-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2942-03A	CBFB	chr16	67116208	+	MYH11	chr16	15814910	-
In-frame	ENST00000305877	ENST00000318560		TCGA	LD	LAML	TCGA-AB-2944-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		TCGA	LD	LAML	TCGA-AB-2944-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
In-frame	ENST00000398512	ENST00000318560		TCGA	LD	LAML	TCGA-AB-2944-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		TCGA	LD	LAML	TCGA-AB-2944-03A	BCR	chr22	23524426	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000264674	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000264674	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000264674	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-3CDS	ENST00000392736	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000392736	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000392736	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-3CDS	ENST00000464456	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000464456	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000464456	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-3CDS	ENST00000472280	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000472280	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000472280	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
In-frame	ENST00000494292	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
5CDS-5UTR	ENST00000494292	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
5CDS-intron	ENST00000494292	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-3CDS	ENST00000468789	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000468789	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000468789	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-3CDS	ENST00000460814	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000460814	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000460814	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-3CDS	ENST00000433243	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-5UTR	ENST00000433243	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000433243	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
5UTR-3CDS	ENST00000485957	ENST00000296255		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
5UTR-5UTR	ENST00000485957	ENST00000497289		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
5UTR-intron	ENST00000485957	ENST00000490166		TCGA	LD	LAML	TCGA-AB-2944-03A	MECOM	chr3	169381124	-	RPN1	chr3	128363826	-
intron-intron	ENST00000344691	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000344691	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000344691	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000344691	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000325074	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000325074	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000325074	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000437180	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000437180	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000437180	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000300305	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000300305	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000300305	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000399240	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000399240	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000399240	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000486278	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000486278	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000486278	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000494829	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000494829	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000494829	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000523629		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000358356	ENST00000396218		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000265814		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000360348		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000436581		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000520724		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000518844		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-5UTR	ENST00000358356	ENST00000522163		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000422361		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
intron-intron	ENST00000358356	ENST00000521553		TCGA	LD	LAML	TCGA-AB-2950-03A	RUNX1	chr21	36259309	-	RUNX1T1	chr8	93074891	-
Frame-shit	ENST00000356175	ENST00000543378		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000356175	ENST00000327564		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000356175	ENST00000394713		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000356175	ENST00000584368		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000356175	ENST00000341671		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
5CDS-intron	ENST00000356175	ENST00000581786		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000358273	ENST00000543378		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000358273	ENST00000327564		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000358273	ENST00000394713		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000358273	ENST00000584368		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000358273	ENST00000341671		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
5CDS-intron	ENST00000358273	ENST00000581786		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000431387	ENST00000543378		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000431387	ENST00000327564		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000431387	ENST00000394713		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000431387	ENST00000584368		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000431387	ENST00000341671		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
5CDS-intron	ENST00000431387	ENST00000581786		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000581113	ENST00000543378		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000581113	ENST00000327564		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000581113	ENST00000394713		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000581113	ENST00000584368		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000581113	ENST00000341671		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-intron	ENST00000581113	ENST00000581786		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000417592	ENST00000543378		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000417592	ENST00000327564		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000417592	ENST00000394713		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000417592	ENST00000584368		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000417592	ENST00000341671		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-intron	ENST00000417592	ENST00000581786		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000444181	ENST00000543378		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000444181	ENST00000327564		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000444181	ENST00000394713		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000444181	ENST00000584368		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-3CDS	ENST00000444181	ENST00000341671		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
intron-intron	ENST00000444181	ENST00000581786		TCGA	LD	LAML	TCGA-AB-2952-03B	NF1	chr17	29422387	+	LRRC37B	chr17	30372719	+
Frame-shit	ENST00000561924	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000561924	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000561924	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
Frame-shit	ENST00000290858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
5CDS-intron	ENST00000290858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000412916	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000412916	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000396324		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000452625		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000576790		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-3CDS	ENST00000568858	ENST00000300036		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
intron-intron	ENST00000568858	ENST00000573908		TCGA	LD	LAML	TCGA-AB-2954-03A	CBFB	chr16	67116242	+	MYH11	chr16	15814908	-
3UTR-3UTR	ENST00000261267	ENST00000176763		TCGA	LD	LAML	TCGA-AB-2954-03A	LYZ	chr12	69747758	+	STK10	chr5	171470350	-
3UTR-intron	ENST00000261267	ENST00000517775		TCGA	LD	LAML	TCGA-AB-2954-03A	LYZ	chr12	69747758	+	STK10	chr5	171470350	-
intron-3UTR	ENST00000549690	ENST00000176763		TCGA	LD	LAML	TCGA-AB-2954-03A	LYZ	chr12	69747758	+	STK10	chr5	171470350	-
intron-intron	ENST00000549690	ENST00000517775		TCGA	LD	LAML	TCGA-AB-2954-03A	LYZ	chr12	69747758	+	STK10	chr5	171470350	-
intron-3UTR	ENST00000548839	ENST00000176763		TCGA	LD	LAML	TCGA-AB-2954-03A	LYZ	chr12	69747758	+	STK10	chr5	171470350	-
intron-intron	ENST00000548839	ENST00000517775		TCGA	LD	LAML	TCGA-AB-2954-03A	LYZ	chr12	69747758	+	STK10	chr5	171470350	-
intron-3CDS	ENST00000534358	ENST00000380338		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000534358	ENST00000355930		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000534358	ENST00000429426		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000534358	ENST00000475957		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000534358	ENST00000380321		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-3CDS	ENST00000389506	ENST00000380338		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000389506	ENST00000355930		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000389506	ENST00000429426		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000389506	ENST00000475957		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000389506	ENST00000380321		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-3CDS	ENST00000354520	ENST00000380338		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000354520	ENST00000355930		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000354520	ENST00000429426		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000354520	ENST00000475957		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000354520	ENST00000380321		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-3CDS	ENST00000420751	ENST00000380338		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000420751	ENST00000355930		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000420751	ENST00000429426		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000420751	ENST00000475957		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
intron-5UTR	ENST00000420751	ENST00000380321		TCGA	LD	LAML	TCGA-AB-2956-03A	KMT2A	chr11	118223925	+	MLLT3	chr9	20365740	-
Frame-shit	ENST00000554659	ENST00000381346		TCGA	LD	LAML	TCGA-AB-2956-03A	VTI1B	chr14	68141092	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000554659	ENST00000553384		TCGA	LD	LAML	TCGA-AB-2956-03A	VTI1B	chr14	68141092	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000554659	ENST00000428130		TCGA	LD	LAML	TCGA-AB-2956-03A	VTI1B	chr14	68141092	-	RDH11	chr14	68159769	-
intron-3CDS	ENST00000238256	ENST00000355710		TCGA	LD	LAML	TCGA-AB-2971-03A	FKBP15	chr9	115936842	-	RET	chr10	43607584	+
intron-3CDS	ENST00000238256	ENST00000340058		TCGA	LD	LAML	TCGA-AB-2971-03A	FKBP15	chr9	115936842	-	RET	chr10	43607584	+
intron-3CDS	ENST00000493847	ENST00000355710		TCGA	LD	LAML	TCGA-AB-2971-03A	FKBP15	chr9	115936842	-	RET	chr10	43607584	+
intron-3CDS	ENST00000493847	ENST00000340058		TCGA	LD	LAML	TCGA-AB-2971-03A	FKBP15	chr9	115936842	-	RET	chr10	43607584	+
Frame-shit	ENST00000324856	ENST00000374168		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
Frame-shit	ENST00000324856	ENST00000374166		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-5UTR	ENST00000324856	ENST00000526792		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000324856	ENST00000374162		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000324856	ENST00000530003		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000324856	ENST00000531382		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000324856	ENST00000488985		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
Frame-shit	ENST00000457599	ENST00000374168		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
Frame-shit	ENST00000457599	ENST00000374166		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-5UTR	ENST00000457599	ENST00000526792		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000457599	ENST00000374162		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000457599	ENST00000530003		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000457599	ENST00000531382		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000457599	ENST00000488985		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
In-frame	ENST00000374152	ENST00000374168		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
In-frame	ENST00000374152	ENST00000374166		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-5UTR	ENST00000374152	ENST00000526792		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000374152	ENST00000374162		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000374152	ENST00000530003		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000374152	ENST00000531382		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000374152	ENST00000488985		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
Frame-shit	ENST00000540690	ENST00000374168		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
Frame-shit	ENST00000540690	ENST00000374166		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-5UTR	ENST00000540690	ENST00000526792		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000540690	ENST00000374162		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000540690	ENST00000530003		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000540690	ENST00000531382		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
5CDS-intron	ENST00000540690	ENST00000488985		TCGA	LD	LAML	TCGA-AB-2981-03B	ARID1A	chr1	27105774	+	RPS6KA1	chr1	26873403	+
Frame-shit	ENST00000432306	ENST00000534894		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000536810		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000545257		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000355995		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000543371		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000355717		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000538897		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000349937		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000369397		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000352065		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000369395		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000432306	ENST00000542695		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369389		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369386		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000466338		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000534894		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000536810		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000545257		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000355995		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000543371		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000355717		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000538897		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000349937		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000369397		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000352065		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000369395		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000393077	ENST00000542695		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369389		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369386		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000466338		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000534894		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000536810		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000545257		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355995		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000543371		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355717		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000538897		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000349937		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369397		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000352065		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369395		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000483122	ENST00000542695		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369389		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369386		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000466338		TCGA	LD	LAML	TCGA-AB-2981-03B	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LAML	TCGA-AB-2984-03A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000330597	ENST00000380237		TCGA	LD	LAML	TCGA-AB-2985-03A	HBG1	chr11	5269638	-	HBE1	chr11	5290698	-
intron-3CDS	ENST00000330597	ENST00000292896		TCGA	LD	LAML	TCGA-AB-2985-03A	HBG1	chr11	5269638	-	HBE1	chr11	5290698	-
intron-intron	ENST00000534358	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000534358	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000534358	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000534358	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000534358	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000534358	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000534358	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000389506	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000354520	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000446906		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000377072		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000307729		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000377059		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000495130		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000377100		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
intron-intron	ENST00000420751	ENST00000377091		TCGA	LD	LAML	TCGA-AB-2985-03A	KMT2A	chr11	118097120	+	MLLT10	chr10	22518460	+
Frame-shit	ENST00000383777	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
Frame-shit	ENST00000383777	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
Frame-shit	ENST00000383777	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
5CDS-intron	ENST00000383777	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
Frame-shit	ENST00000399451	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
Frame-shit	ENST00000399451	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
Frame-shit	ENST00000399451	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
5CDS-intron	ENST00000399451	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
5UTR-3CDS	ENST00000497037	ENST00000241453		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
5UTR-3CDS	ENST00000497037	ENST00000380982		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
5UTR-3CDS	ENST00000497037	ENST00000537084		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
5UTR-intron	ENST00000497037	ENST00000469894		TCGA	LD	LAML	TCGA-AB-2990-03B	ANKRD28	chr3	15720983	-	FLT3	chr13	28602425	-
intron-intron	ENST00000340482	ENST00000372179		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000340482	ENST00000393228		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000340482	ENST00000360670		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-3UTR	ENST00000340482	ENST00000393229		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000340482	ENST00000490694		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000225275	ENST00000372179		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000225275	ENST00000393228		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000225275	ENST00000360670		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-3UTR	ENST00000225275	ENST00000393229		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000225275	ENST00000490694		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000578493	ENST00000372179		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000578493	ENST00000393228		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000578493	ENST00000360670		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-3UTR	ENST00000578493	ENST00000393229		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
intron-intron	ENST00000578493	ENST00000490694		TCGA	LD	LAML	TCGA-AB-2991-03A	MPO	chr17	56356397	-	NTNG2	chr9	135119071	+
3UTR-intron	ENST00000395389	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2991-03A	SPN	chr16	29676755	+	MPO	chr17	56355551	-
3UTR-intron	ENST00000395389	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2991-03A	SPN	chr16	29676755	+	MPO	chr17	56355551	-
3UTR-intron	ENST00000395389	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2991-03A	SPN	chr16	29676755	+	MPO	chr17	56355551	-
3UTR-intron	ENST00000360121	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2991-03A	SPN	chr16	29676755	+	MPO	chr17	56355551	-
3UTR-intron	ENST00000360121	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2991-03A	SPN	chr16	29676755	+	MPO	chr17	56355551	-
3UTR-intron	ENST00000360121	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2991-03A	SPN	chr16	29676755	+	MPO	chr17	56355551	-
intron-5UTR	ENST00000396651	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
intron-5UTR	ENST00000396651	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
intron-intron	ENST00000396651	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
intron-5UTR	ENST00000372209	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
intron-5UTR	ENST00000372209	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
intron-intron	ENST00000372209	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
3UTR-5UTR	ENST00000485390	ENST00000340482		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
3UTR-5UTR	ENST00000485390	ENST00000225275		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
3UTR-intron	ENST00000485390	ENST00000578493		TCGA	LD	LAML	TCGA-AB-2993-03A	RPS8	chr1	45241578	+	MPO	chr17	56358276	-
Frame-shit	ENST00000319670	ENST00000341500		TCGA	LD	LAML	TCGA-AB-2994-03A	ARHGEF18	chr19	7512054	+	INSR	chr19	7267907	-
Frame-shit	ENST00000319670	ENST00000302850		TCGA	LD	LAML	TCGA-AB-2994-03A	ARHGEF18	chr19	7512054	+	INSR	chr19	7267907	-
Frame-shit	ENST00000359920	ENST00000341500		TCGA	LD	LAML	TCGA-AB-2994-03A	ARHGEF18	chr19	7512054	+	INSR	chr19	7267907	-
Frame-shit	ENST00000359920	ENST00000302850		TCGA	LD	LAML	TCGA-AB-2994-03A	ARHGEF18	chr19	7512054	+	INSR	chr19	7267907	-
intron-3UTR	ENST00000535572	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000535572	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000535572	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000535572	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000535572	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000535572	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000535572	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000535572	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000537687	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000537687	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000537687	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000537687	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000537687	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000537687	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000537687	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000537687	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000315939	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000315939	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000315939	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000315939	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000315939	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000315939	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000315939	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000315939	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000447667	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000447667	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000447667	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000447667	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000447667	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000447667	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000447667	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000447667	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000530271	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000530271	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000530271	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000530271	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000530271	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000530271	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000530271	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000530271	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000540360	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000540360	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000540360	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000540360	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000540360	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000540360	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000540360	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000540360	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000340908	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000340908	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-3UTR	ENST00000340908	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000340908	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000340908	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000340908	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000340908	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
intron-intron	ENST00000340908	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000574564	ENST00000358495		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000574564	ENST00000430095		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-3UTR	ENST00000574564	ENST00000539046		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000574564	ENST00000536177		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000574564	ENST00000544742		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000574564	ENST00000541619		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000574564	ENST00000535376		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000574564	ENST00000545564		TCGA	LD	LAML	TCGA-AB-2999-03B	WNK1	chr12	977669	+	RAD52	chr12	1022358	-
5CDS-intron	ENST00000395135	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395135	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395132	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395132	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268059	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268059	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000354026	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000354026	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268058	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268058	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000565898	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000565898	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569477	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569477	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569965	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569965	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000567543	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000567543	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000435786	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000435786	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000436891	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000436891	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000564428	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000564428	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000359928	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000359928	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000563500	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000563500	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000569161	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000569161	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3001-03A	PML	chr15	74315749	+	RARA	chr17	38499006	+
intron-intron	ENST00000534358	ENST00000446906		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000534358	ENST00000377072		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000534358	ENST00000307729		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000534358	ENST00000377059		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000534358	ENST00000495130		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000534358	ENST00000377100		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000534358	ENST00000377091		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000446906		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000377072		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000307729		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000377059		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000495130		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000377100		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000389506	ENST00000377091		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000446906		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000377072		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000307729		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000377059		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000495130		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000377100		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000354520	ENST00000377091		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000446906		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000377072		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000307729		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000377059		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000495130		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000377100		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
intron-intron	ENST00000420751	ENST00000377091		TCGA	LD	LAML	TCGA-AB-3005-03A	KMT2A	chr11	118092383	+	MLLT10	chr10	22580559	+
In-frame	ENST00000395135	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395135	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000395132	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268059	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000354026	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000268058	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000565898	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569477	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000569965	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000567543	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000435786	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000436891	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000564428	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000359928	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
In-frame	ENST00000563500	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-3CDS	ENST00000569161	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
intron-intron	ENST00000569161	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3007-03A	PML	chr15	74315749	+	RARA	chr17	38504568	+
Frame-shit	ENST00000311528	ENST00000340482		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
Frame-shit	ENST00000311528	ENST00000225275		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
5CDS-intron	ENST00000311528	ENST00000578493		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
Frame-shit	ENST00000567815	ENST00000340482		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
Frame-shit	ENST00000567815	ENST00000225275		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
5CDS-intron	ENST00000567815	ENST00000578493		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
intron-3CDS	ENST00000452368	ENST00000340482		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
intron-3CDS	ENST00000452368	ENST00000225275		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
intron-intron	ENST00000452368	ENST00000578493		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
Frame-shit	ENST00000393099	ENST00000340482		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
Frame-shit	ENST00000393099	ENST00000225275		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
5CDS-intron	ENST00000393099	ENST00000578493		TCGA	LD	LAML	TCGA-AB-3007-03A	RPL13	chr16	89628079	+	MPO	chr17	56349220	-
Frame-shit	ENST00000395135	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000395135	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395135	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000395132	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000395132	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000395132	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268059	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268059	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268059	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000354026	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000354026	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000354026	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268058	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000268058	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000268058	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000565898	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000565898	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000565898	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569477	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569477	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569477	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000569965	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000569965	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000567543	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000567543	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000567543	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000435786	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000435786	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000435786	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000436891	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000436891	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000564428	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000564428	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000564428	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000359928	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000359928	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000359928	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000563500	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
Frame-shit	ENST00000563500	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
5CDS-intron	ENST00000563500	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-3CDS	ENST00000569161	ENST00000254066		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-3CDS	ENST00000569161	ENST00000394089		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000425707		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000394086		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000394081		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
3UTR-intron	ENST00000569161	ENST00000420042		TCGA	LD	LAML	TCGA-AB-3012-03A	PML	chr15	74317268	+	RARA	chr17	38504568	+
In-frame	ENST00000294016	ENST00000283429		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
In-frame	ENST00000294016	ENST00000574733		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
In-frame	ENST00000294016	ENST00000404295		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
In-frame	ENST00000294016	ENST00000574425		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
5CDS-intron	ENST00000294016	ENST00000572391		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
intron-3CDS	ENST00000571889	ENST00000283429		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
intron-3CDS	ENST00000571889	ENST00000574733		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
intron-3CDS	ENST00000571889	ENST00000404295		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
intron-3CDS	ENST00000571889	ENST00000574425		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
intron-intron	ENST00000571889	ENST00000572391		TCGA	RV	LGG	TCGA-DB-A64L-01A	ADCY9	chr16	4163751	-	NMRAL1	chr16	4519466	-
5UTR-3CDS	ENST00000262198	ENST00000353265		TCGA	RV	LGG	TCGA-CS-5393-01A	ADNP2	chr18	77867356	+	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000262198	ENST00000470488		TCGA	RV	LGG	TCGA-CS-5393-01A	ADNP2	chr18	77867356	+	PARD6G	chr18	77960815	-
5CDS-5UTR	ENST00000360265	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000360265	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000360265	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000360265	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000358461	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000358461	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000358461	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000358461	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000420658	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000420658	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000420658	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000420658	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000382543	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000382543	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000382543	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000382543	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-5UTR	ENST00000513842	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-intron	ENST00000513842	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-intron	ENST00000513842	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-intron	ENST00000513842	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-01A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000338110	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000338110	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000338110	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
3UTR-5UTR	ENST00000395248	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
3UTR-intron	ENST00000395248	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
3UTR-intron	ENST00000395248	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000575627	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000575627	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000575627	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000566897	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000566897	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000566897	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000569545	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000569545	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000569545	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000563060	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000563060	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000563060	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000412304	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000412304	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000412304	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
3UTR-5UTR	ENST00000564546	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
3UTR-intron	ENST00000564546	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
3UTR-intron	ENST00000564546	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000564595	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000564595	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000564595	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000569798	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000569798	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000569798	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000395240	ENST00000265113		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000395240	ENST00000506725		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000395240	ENST00000381918		TCGA	RV	LGG	TCGA-DU-5870-01A	ALDOA	chr16	30081734	+	SLC1A3	chr5	36606541	+
In-frame	ENST00000506722	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
intron-3CDS	ENST00000394537	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
Frame-shit	ENST00000357077	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
intron-3CDS	ENST00000264366	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
intron-3CDS	ENST00000509550	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
intron-3CDS	ENST00000510275	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
intron-3CDS	ENST00000504887	ENST00000264245		TCGA	RV	LGG	TCGA-DB-A75P-01A	ANK2	chr4	114304891	+	ARHGAP31	chr3	119013220	+
5CDS-intron	ENST00000346798	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000346798	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000354192	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000354192	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000348990	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000348990	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000357903	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000357903	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000358918	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000358918	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000359726	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000359726	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000448388	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000448388	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000440126	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000440126	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000439274	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000439274	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000474136	ENST00000322349		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
intron-intron	ENST00000474136	ENST00000547833		TCGA	RV	LGG	TCGA-HT-7610-01A	APP	chr21	27252862	-	EEA1	chr12	93229203	-
5CDS-5UTR	ENST00000317133	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-intron	ENST00000317133	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000317133	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000317133	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000317133	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000317133	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000317133	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000317133	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-intron	ENST00000375741	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000375741	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-intron	ENST00000375739	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375739	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-intron	ENST00000370623	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000370623	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-intron	ENST00000544132	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000544132	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-intron	ENST00000218789	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000218789	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-intron	ENST00000375736	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
5UTR-5UTR	ENST00000375736	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-intron	ENST00000426073	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000426073	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-intron	ENST00000375737	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375737	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-intron	ENST00000375723	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000375723	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-intron	ENST00000478679	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000478679	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000392491		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-intron	ENST00000483189	ENST00000607474		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000368452		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000368448		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000392490		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000258014		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000354275		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-5UTR	ENST00000483189	ENST00000368446		TCGA	RV	LGG	TCGA-TM-A7CA-01A	ARHGEF7	chr13	111806338	+	PKIB	chr6	123038932	+
intron-3CDS	ENST00000446450	ENST00000397010		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000309576		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000397015		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000397012		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000397026		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000397000		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000539812		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000446450	ENST00000287820		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000397010		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000309576		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000397015		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000397012		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000397026		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000397000		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000539812		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354956	ENST00000287820		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000397010		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000309576		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000397015		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000397012		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000397026		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000397000		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000539812		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000354449	ENST00000287820		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000397010		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000309576		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000397015		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000397012		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000397026		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000397000		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000539812		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
intron-3CDS	ENST00000469654	ENST00000287820		TCGA	RV	LGG	TCGA-DU-5871-01A	ATG7	chr3	11468400	+	PPARG	chr3	12475397	+
Frame-shit	ENST00000262429	ENST00000561648		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000262429	ENST00000563137		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000262429	ENST00000562871		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000262429	ENST00000262383		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000262429	ENST00000535559		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000262429	ENST00000567169		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000262429	ENST00000562520		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
Frame-shit	ENST00000416219	ENST00000561648		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000416219	ENST00000563137		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000416219	ENST00000562871		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000416219	ENST00000262383		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000416219	ENST00000535559		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000416219	ENST00000567169		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000416219	ENST00000562520		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-3CDS	ENST00000420010	ENST00000561648		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-5UTR	ENST00000420010	ENST00000563137		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-intron	ENST00000420010	ENST00000562871		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-intron	ENST00000420010	ENST00000262383		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-intron	ENST00000420010	ENST00000535559		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-intron	ENST00000420010	ENST00000567169		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
intron-5UTR	ENST00000420010	ENST00000562520		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATP2C2	chr16	84402320	+	ZNF423	chr16	49823457	-
5UTR-3CDS	ENST00000378827	ENST00000217233		TCGA	RV	LGG	TCGA-DU-8163-01A	BMP2	chr20	6749522	+	TRIB3	chr20	368655	+
5UTR-3UTR	ENST00000378827	ENST00000485293		TCGA	RV	LGG	TCGA-DU-8163-01A	BMP2	chr20	6749522	+	TRIB3	chr20	368655	+
5UTR-3UTR	ENST00000378827	ENST00000422053		TCGA	RV	LGG	TCGA-DU-8163-01A	BMP2	chr20	6749522	+	TRIB3	chr20	368655	+
5CDS-intron	ENST00000356978	ENST00000367545		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000356978	ENST00000367526		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000356978	ENST00000480333		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000447653	ENST00000367545		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000447653	ENST00000367526		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000447653	ENST00000480333		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000555132	ENST00000367545		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000555132	ENST00000367526		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000555132	ENST00000480333		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000553542	ENST00000367545		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000553542	ENST00000367526		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000553542	ENST00000480333		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000544280	ENST00000367545		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000544280	ENST00000367526		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
intron-intron	ENST00000544280	ENST00000480333		TCGA	RV	LGG	TCGA-HT-8104-01A	CALM1	chr14	90874605	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000366767	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366767	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366767	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366767	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366767	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
Frame-shit	ENST00000366769	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366769	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366769	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366769	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366769	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
Frame-shit	ENST00000366764	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366764	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366764	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366764	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366764	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
Frame-shit	ENST00000334218	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000334218	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000334218	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000334218	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000334218	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
Frame-shit	ENST00000366766	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366766	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366766	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366766	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366766	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
Frame-shit	ENST00000535525	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000535525	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000535525	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000535525	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000535525	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
Frame-shit	ENST00000366765	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366765	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366765	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366765	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
5CDS-3UTR	ENST00000366765	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
intron-3CDS	ENST00000488131	ENST00000367382		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
intron-3UTR	ENST00000488131	ENST00000309309		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
intron-3UTR	ENST00000488131	ENST00000281087		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
intron-3UTR	ENST00000488131	ENST00000367381		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
intron-3UTR	ENST00000488131	ENST00000489986		TCGA	RV	LGG	TCGA-TM-A84I-01A	CDC42BPA	chr1	227441765	-	ATP6V1G3	chr1	198492694	-
In-frame	ENST00000274695	ENST00000230449		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
5CDS-5UTR	ENST00000274695	ENST00000448181		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
5CDS-intron	ENST00000274695	ENST00000475028		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
In-frame	ENST00000378624	ENST00000230449		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
5CDS-5UTR	ENST00000378624	ENST00000448181		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
5CDS-intron	ENST00000378624	ENST00000475028		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
In-frame	ENST00000378610	ENST00000230449		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
5CDS-5UTR	ENST00000378610	ENST00000448181		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
5CDS-intron	ENST00000378610	ENST00000475028		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
intron-3CDS	ENST00000476517	ENST00000230449		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
intron-5UTR	ENST00000476517	ENST00000448181		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
intron-intron	ENST00000476517	ENST00000475028		TCGA	RV	LGG	TCGA-DH-A66G-01A	CDKAL1	chr6	20758874	+	EXOC2	chr6	576882	-
Frame-shit	ENST00000003084	ENST00000265441		TCGA	RV	LGG	TCGA-HT-A61C-01A	CFTR	chr7	117251862	+	WNT2	chr7	116960847	-
Frame-shit	ENST00000454343	ENST00000265441		TCGA	RV	LGG	TCGA-HT-A61C-01A	CFTR	chr7	117251862	+	WNT2	chr7	116960847	-
intron-3CDS	ENST00000608965	ENST00000265441		TCGA	RV	LGG	TCGA-HT-A61C-01A	CFTR	chr7	117251862	+	WNT2	chr7	116960847	-
In-frame	ENST00000305031	ENST00000452510		TCGA	RV	LGG	TCGA-P5-A72W-01A	CHSY3	chr5	129244053	+	DDX46	chr5	134130540	+
In-frame	ENST00000305031	ENST00000354283		TCGA	RV	LGG	TCGA-P5-A72W-01A	CHSY3	chr5	129244053	+	DDX46	chr5	134130540	+
5CDS-3UTR	ENST00000305031	ENST00000509178		TCGA	RV	LGG	TCGA-P5-A72W-01A	CHSY3	chr5	129244053	+	DDX46	chr5	134130540	+
3UTR-3CDS	ENST00000507545	ENST00000452510		TCGA	RV	LGG	TCGA-P5-A72W-01A	CHSY3	chr5	129244053	+	DDX46	chr5	134130540	+
3UTR-3CDS	ENST00000507545	ENST00000354283		TCGA	RV	LGG	TCGA-P5-A72W-01A	CHSY3	chr5	129244053	+	DDX46	chr5	134130540	+
3UTR-3UTR	ENST00000507545	ENST00000509178		TCGA	RV	LGG	TCGA-P5-A72W-01A	CHSY3	chr5	129244053	+	DDX46	chr5	134130540	+
Frame-shit	ENST00000466830	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	CMC1	chr3	28304871	+	ERC2	chr3	56207548	-
5CDS-intron	ENST00000466830	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	CMC1	chr3	28304871	+	ERC2	chr3	56207548	-
intron-3CDS	ENST00000423894	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	CMC1	chr3	28304871	+	ERC2	chr3	56207548	-
intron-intron	ENST00000423894	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	CMC1	chr3	28304871	+	ERC2	chr3	56207548	-
intron-3CDS	ENST00000469102	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	CMC1	chr3	28304871	+	ERC2	chr3	56207548	-
intron-intron	ENST00000469102	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	CMC1	chr3	28304871	+	ERC2	chr3	56207548	-
In-frame	ENST00000229195	ENST00000307378		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
In-frame	ENST00000229195	ENST00000537524		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000229195	ENST00000473830		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000229195	ENST00000452078		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000229195	ENST00000458504		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000229195	ENST00000390670		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
In-frame	ENST00000418359	ENST00000307378		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
In-frame	ENST00000418359	ENST00000537524		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000418359	ENST00000473830		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000418359	ENST00000452078		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000418359	ENST00000458504		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
5CDS-intron	ENST00000418359	ENST00000390670		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-3CDS	ENST00000548230	ENST00000307378		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-3CDS	ENST00000548230	ENST00000537524		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000548230	ENST00000473830		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000548230	ENST00000452078		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000548230	ENST00000458504		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000548230	ENST00000390670		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-3CDS	ENST00000551483	ENST00000307378		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-3CDS	ENST00000551483	ENST00000537524		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000551483	ENST00000473830		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000551483	ENST00000452078		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000551483	ENST00000458504		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
intron-intron	ENST00000551483	ENST00000390670		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	CNOT2	chr12	70672054	+	SLCO1A2	chr12	21445270	-
In-frame	ENST00000452533	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000452533	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000452533	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000452533	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000452533	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000553257	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000553257	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000553257	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000553257	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000553257	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000549701	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000549701	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000549701	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000549701	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000549701	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000358214	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000358214	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000358214	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000358214	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000358214	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
3UTR-3CDS	ENST00000548671	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
3UTR-3CDS	ENST00000548671	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
3UTR-intron	ENST00000548671	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
3UTR-intron	ENST00000548671	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
3UTR-intron	ENST00000548671	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000266481	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000266481	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000266481	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000266481	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000266481	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000547312	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000547312	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000547312	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000547312	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000547312	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000414834	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5UTR-3CDS	ENST00000414834	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000414834	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000414834	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5UTR-intron	ENST00000414834	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000381000	ENST00000229922		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
In-frame	ENST00000381000	ENST00000489374		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000381000	ENST00000378990		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000381000	ENST00000493172		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
5CDS-intron	ENST00000381000	ENST00000465994		TCGA	RV	LGG	TCGA-S9-A6U8-01A	DNM1L	chr12	32832399	+	CAP2	chr6	17463227	+
intron-3CDS	ENST00000327921	ENST00000267620		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-3CDS	ENST00000327921	ENST00000342058		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-3CDS	ENST00000327921	ENST00000556154		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-intron	ENST00000327921	ENST00000556961		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000262233	ENST00000267620		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000262233	ENST00000342058		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000262233	ENST00000556154		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
5CDS-intron	ENST00000262233	ENST00000556961		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000334192	ENST00000267620		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000334192	ENST00000342058		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000334192	ENST00000556154		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
5CDS-intron	ENST00000334192	ENST00000556961		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-3CDS	ENST00000556758	ENST00000267620		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-3CDS	ENST00000556758	ENST00000342058		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-3CDS	ENST00000556758	ENST00000556154		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
intron-intron	ENST00000556758	ENST00000556961		TCGA	RV	LGG	TCGA-CS-4943-01A	EML1	chr14	100259880	+	FBLN5	chr14	92409305	-
Frame-shit	ENST00000545951	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000545951	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000545951	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000545951	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000545951	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000545951	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000382839	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000382839	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000324666	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000324666	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000502458	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000502458	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000505311	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000505311	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-02A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000316623	ENST00000355327		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
Frame-shit	ENST00000316623	ENST00000261862		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
Frame-shit	ENST00000316623	ENST00000357769		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
5CDS-3UTR	ENST00000316623	ENST00000567838		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3CDS	ENST00000561429	ENST00000355327		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3CDS	ENST00000561429	ENST00000261862		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3CDS	ENST00000561429	ENST00000357769		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3UTR	ENST00000561429	ENST00000567838		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3CDS	ENST00000560355	ENST00000355327		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3CDS	ENST00000560355	ENST00000261862		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3CDS	ENST00000560355	ENST00000357769		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
intron-3UTR	ENST00000560355	ENST00000567838		TCGA	RV	LGG	TCGA-DB-5277-01A	FBN1	chr15	48902925	-	THSD4	chr15	71952869	+
5UTR-3CDS	ENST00000476844	ENST00000295874		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3CDS	ENST00000476844	ENST00000474889		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3UTR	ENST00000476844	ENST00000495879		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3CDS	ENST00000492590	ENST00000295874		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3CDS	ENST00000492590	ENST00000474889		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3UTR	ENST00000492590	ENST00000495879		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
intron-3CDS	ENST00000466788	ENST00000295874		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
intron-3CDS	ENST00000466788	ENST00000474889		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
intron-3UTR	ENST00000466788	ENST00000495879		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3CDS	ENST00000468189	ENST00000295874		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3CDS	ENST00000468189	ENST00000474889		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
5UTR-3UTR	ENST00000468189	ENST00000495879		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
intron-3CDS	ENST00000341848	ENST00000295874		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
intron-3CDS	ENST00000341848	ENST00000474889		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
intron-3UTR	ENST00000341848	ENST00000495879		TCGA	RV	LGG	TCGA-CS-4941-01A	FHIT	chr3	61236975	-	PTPRG	chr3	61734552	+
In-frame	ENST00000264433	ENST00000517870		TCGA	RV	LGG	TCGA-HT-7475-01A	FNIP2	chr4	159690471	+	FAM159A	chr1	53108535	+
5CDS-3UTR	ENST00000264433	ENST00000401050		TCGA	RV	LGG	TCGA-HT-7475-01A	FNIP2	chr4	159690471	+	FAM159A	chr1	53108535	+
intron-3CDS	ENST00000379346	ENST00000517870		TCGA	RV	LGG	TCGA-HT-7475-01A	FNIP2	chr4	159690471	+	FAM159A	chr1	53108535	+
intron-3UTR	ENST00000379346	ENST00000401050		TCGA	RV	LGG	TCGA-HT-7475-01A	FNIP2	chr4	159690471	+	FAM159A	chr1	53108535	+
intron-3CDS	ENST00000505445	ENST00000517870		TCGA	RV	LGG	TCGA-HT-7475-01A	FNIP2	chr4	159690471	+	FAM159A	chr1	53108535	+
intron-3UTR	ENST00000505445	ENST00000401050		TCGA	RV	LGG	TCGA-HT-7475-01A	FNIP2	chr4	159690471	+	FAM159A	chr1	53108535	+
Frame-shit	ENST00000417257	ENST00000303329		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-5UTR	ENST00000417257	ENST00000533983		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-5UTR	ENST00000417257	ENST00000527771		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-intron	ENST00000417257	ENST00000531595		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
Frame-shit	ENST00000402883	ENST00000303329		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-5UTR	ENST00000402883	ENST00000533983		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-5UTR	ENST00000402883	ENST00000527771		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-intron	ENST00000402883	ENST00000531595		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
intron-3CDS	ENST00000484674	ENST00000303329		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
intron-5UTR	ENST00000484674	ENST00000533983		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
intron-5UTR	ENST00000484674	ENST00000527771		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
intron-intron	ENST00000484674	ENST00000531595		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FRMD5	chr15	44487151	-	ARNT2	chr15	80743221	+
5CDS-intron	ENST00000360689	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000360689	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000360689	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000360689	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000360689	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394586	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394586	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394586	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394586	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394586	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000557164	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000557164	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000557164	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000557164	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000557164	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394585	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394585	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394585	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394585	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-intron	ENST00000394585	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000358307	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000358307	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000358307	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000358307	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000358307	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000417683	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000417683	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000417683	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000417683	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000417683	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000554765	ENST00000381232		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000554765	ENST00000555818		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000554765	ENST00000358550		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000554765	ENST00000537413		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
intron-intron	ENST00000554765	ENST00000554874		TCGA	RV	LGG	TCGA-IK-7675-01A	FUT8	chr14	66028484	+	SIPA1L1	chr14	71996029	+
5CDS-5UTR	ENST00000309859	ENST00000368910		TCGA	RV	LGG	TCGA-HT-A61B-01A	GGA2	chr16	23502998	-	TNFAIP8L2	chr1	151131142	+
5CDS-5UTR	ENST00000567468	ENST00000368910		TCGA	RV	LGG	TCGA-HT-A61B-01A	GGA2	chr16	23502998	-	TNFAIP8L2	chr1	151131142	+
intron-5UTR	ENST00000569182	ENST00000368910		TCGA	RV	LGG	TCGA-HT-A61B-01A	GGA2	chr16	23502998	-	TNFAIP8L2	chr1	151131142	+
5CDS-intron	ENST00000225724	ENST00000540235		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000225724	ENST00000393930		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000225724	ENST00000393931		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000225724	ENST00000310706		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000451249	ENST00000540235		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000451249	ENST00000393930		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000451249	ENST00000393931		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000451249	ENST00000310706		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000467337	ENST00000540235		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000467337	ENST00000393930		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000467337	ENST00000393931		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000467337	ENST00000310706		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000581721	ENST00000540235		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000581721	ENST00000393930		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000581721	ENST00000393931		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
5CDS-intron	ENST00000581721	ENST00000310706		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
intron-intron	ENST00000579905	ENST00000540235		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
intron-intron	ENST00000579905	ENST00000393930		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
intron-intron	ENST00000579905	ENST00000393931		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
intron-intron	ENST00000579905	ENST00000310706		TCGA	RV	LGG	TCGA-CS-6665-01A	GOSR1	chr17	28811788	+	JUP	chr17	39921319	-
intron-5UTR	ENST00000310454	ENST00000409478		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000310454	ENST00000329971		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000310454	ENST00000264160		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000310454	ENST00000410054		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000310454	ENST00000409606		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-intron	ENST00000310454	ENST00000443537		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409125	ENST00000409478		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409125	ENST00000329971		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409125	ENST00000264160		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409125	ENST00000410054		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409125	ENST00000409606		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-intron	ENST00000409125	ENST00000443537		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000438166	ENST00000409478		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000438166	ENST00000329971		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000438166	ENST00000264160		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000438166	ENST00000410054		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000438166	ENST00000409606		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-intron	ENST00000438166	ENST00000443537		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000540309	ENST00000409478		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000540309	ENST00000329971		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000540309	ENST00000264160		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000540309	ENST00000410054		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-5UTR	ENST00000540309	ENST00000409606		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
5UTR-intron	ENST00000540309	ENST00000443537		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409674	ENST00000409478		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409674	ENST00000329971		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409674	ENST00000264160		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409674	ENST00000410054		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000409674	ENST00000409606		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-intron	ENST00000409674	ENST00000443537		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000496190	ENST00000409478		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000496190	ENST00000329971		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000496190	ENST00000264160		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000496190	ENST00000410054		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000496190	ENST00000409606		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
intron-intron	ENST00000496190	ENST00000443537		TCGA	RV	LGG	TCGA-FG-5963-02A	GPD2	chr2	157293025	+	R3HDM1	chr2	136360070	+
Frame-shit	ENST00000315266	ENST00000331968		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000315266	ENST00000415220		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
5CDS-intron	ENST00000315266	ENST00000551644		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000478722	ENST00000331968		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000478722	ENST00000415220		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
5CDS-intron	ENST00000478722	ENST00000551644		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000459628	ENST00000331968		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000459628	ENST00000415220		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
5CDS-intron	ENST00000459628	ENST00000551644		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000543237	ENST00000331968		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000543237	ENST00000415220		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
5CDS-intron	ENST00000543237	ENST00000551644		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000305960	ENST00000331968		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000305960	ENST00000415220		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
5CDS-intron	ENST00000305960	ENST00000551644		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
intron-3CDS	ENST00000544752	ENST00000331968		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
intron-3CDS	ENST00000544752	ENST00000415220		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
intron-intron	ENST00000544752	ENST00000551644		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	GPHN	chr14	67147903	+	PRKD1	chr14	30135414	-
Frame-shit	ENST00000374490	ENST00000373476		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
Frame-shit	ENST00000374490	ENST00000373475		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
5CDS-intron	ENST00000374490	ENST00000398243		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
5CDS-intron	ENST00000374490	ENST00000356689		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
Frame-shit	ENST00000436439	ENST00000373476		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
Frame-shit	ENST00000436439	ENST00000373475		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
5CDS-intron	ENST00000436439	ENST00000398243		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
5CDS-intron	ENST00000436439	ENST00000356689		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
Frame-shit	ENST00000374483	ENST00000373476		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
Frame-shit	ENST00000374483	ENST00000373475		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
5CDS-intron	ENST00000374483	ENST00000398243		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
5CDS-intron	ENST00000374483	ENST00000356689		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
intron-3CDS	ENST00000509389	ENST00000373476		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
intron-3CDS	ENST00000509389	ENST00000373475		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
intron-intron	ENST00000509389	ENST00000398243		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
intron-intron	ENST00000509389	ENST00000356689		TCGA	RV	LGG	TCGA-DB-A64O-01A	HMGCL	chr1	24130890	-	S100PBP	chr1	33321525	+
In-frame	ENST00000370549	ENST00000354105		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
5CDS-intron	ENST00000370549	ENST00000478047		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
5CDS-intron	ENST00000370549	ENST00000370379		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
In-frame	ENST00000370552	ENST00000354105		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
5CDS-intron	ENST00000370552	ENST00000478047		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
5CDS-intron	ENST00000370552	ENST00000370379		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
In-frame	ENST00000370546	ENST00000354105		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
5CDS-intron	ENST00000370546	ENST00000478047		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
5CDS-intron	ENST00000370546	ENST00000370379		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
intron-3CDS	ENST00000404542	ENST00000354105		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
intron-intron	ENST00000404542	ENST00000478047		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
intron-intron	ENST00000404542	ENST00000370379		TCGA	RV	LGG	TCGA-FN-7833-01A	HPSE2	chr10	100903995	-	CWF19L1	chr10	102003534	-
Frame-shit	ENST00000374647	ENST00000374595		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
Frame-shit	ENST00000374647	ENST00000325551		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
Frame-shit	ENST00000374647	ENST00000325580		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
5CDS-intron	ENST00000374647	ENST00000374594		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
5CDS-intron	ENST00000374647	ENST00000488130		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
5CDS-intron	ENST00000374647	ENST00000374593		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-3CDS	ENST00000537196	ENST00000374595		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-3CDS	ENST00000537196	ENST00000325551		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-3CDS	ENST00000537196	ENST00000325580		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-intron	ENST00000537196	ENST00000374594		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-intron	ENST00000537196	ENST00000488130		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-intron	ENST00000537196	ENST00000374593		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-3CDS	ENST00000467959	ENST00000374595		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-3CDS	ENST00000467959	ENST00000325551		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-3CDS	ENST00000467959	ENST00000325580		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-intron	ENST00000467959	ENST00000374594		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-intron	ENST00000467959	ENST00000488130		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-intron	ENST00000467959	ENST00000374593		TCGA	RV	LGG	TCGA-TM-A84Q-01A	IKBKAP	chr9	111685122	-	CTNNAL1	chr9	111761536	-
intron-5UTR	ENST00000280684	ENST00000307637		TCGA	RV	LGG	TCGA-DH-A66G-01A	KCNA6	chr12	4923944	+	C3AR1	chr12	8212791	-
3UTR-5UTR	ENST00000433855	ENST00000307637		TCGA	RV	LGG	TCGA-DH-A66G-01A	KCNA6	chr12	4923944	+	C3AR1	chr12	8212791	-
In-frame	ENST00000242365	ENST00000288602		TCGA	RV	LGG	TCGA-HT-7691-01A	KIAA1549	chr7	138545885	-	BRAF	chr7	140487384	-
In-frame	ENST00000440172	ENST00000288602		TCGA	RV	LGG	TCGA-HT-7691-01A	KIAA1549	chr7	138545885	-	BRAF	chr7	140487384	-
In-frame	ENST00000422774	ENST00000288602		TCGA	RV	LGG	TCGA-HT-7691-01A	KIAA1549	chr7	138545885	-	BRAF	chr7	140487384	-
Frame-shit	ENST00000361069	ENST00000360403		TCGA	RV	LGG	TCGA-HT-A617-01A	LAMC3	chr9	133928352	+	EIF2B3	chr1	45363116	-
Frame-shit	ENST00000361069	ENST00000372183		TCGA	RV	LGG	TCGA-HT-A617-01A	LAMC3	chr9	133928352	+	EIF2B3	chr1	45363116	-
5CDS-intron	ENST00000361069	ENST00000480675		TCGA	RV	LGG	TCGA-HT-A617-01A	LAMC3	chr9	133928352	+	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000480883	ENST00000360403		TCGA	RV	LGG	TCGA-HT-A617-01A	LAMC3	chr9	133928352	+	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000480883	ENST00000372183		TCGA	RV	LGG	TCGA-HT-A617-01A	LAMC3	chr9	133928352	+	EIF2B3	chr1	45363116	-
intron-intron	ENST00000480883	ENST00000480675		TCGA	RV	LGG	TCGA-HT-A617-01A	LAMC3	chr9	133928352	+	EIF2B3	chr1	45363116	-
In-frame	ENST00000370577	ENST00000354590		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LMBRD1	chr6	70506705	-	ZBTB45	chr19	59029040	-
In-frame	ENST00000370577	ENST00000594051		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LMBRD1	chr6	70506705	-	ZBTB45	chr19	59029040	-
In-frame	ENST00000370577	ENST00000600990		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LMBRD1	chr6	70506705	-	ZBTB45	chr19	59029040	-
intron-3CDS	ENST00000370570	ENST00000354590		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LMBRD1	chr6	70506705	-	ZBTB45	chr19	59029040	-
intron-3CDS	ENST00000370570	ENST00000594051		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LMBRD1	chr6	70506705	-	ZBTB45	chr19	59029040	-
intron-3CDS	ENST00000370570	ENST00000600990		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LMBRD1	chr6	70506705	-	ZBTB45	chr19	59029040	-
5CDS-5UTR	ENST00000296603	ENST00000274629		TCGA	RV	LGG	TCGA-DB-5281-01A	LMBRD2	chr5	36136411	-	KCNMB1	chr5	169812475	-
5CDS-5UTR	ENST00000296603	ENST00000521859		TCGA	RV	LGG	TCGA-DB-5281-01A	LMBRD2	chr5	36136411	-	KCNMB1	chr5	169812475	-
In-frame	ENST00000262301	ENST00000409671		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
In-frame	ENST00000262301	ENST00000389176		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
In-frame	ENST00000399843	ENST00000409671		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
In-frame	ENST00000399843	ENST00000389176		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
intron-3CDS	ENST00000543238	ENST00000409671		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
intron-3CDS	ENST00000543238	ENST00000389176		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
In-frame	ENST00000568897	ENST00000409671		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
In-frame	ENST00000568897	ENST00000389176		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
intron-3CDS	ENST00000568268	ENST00000409671		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
intron-3CDS	ENST00000568268	ENST00000389176		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
3UTR-3CDS	ENST00000539379	ENST00000409671		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
3UTR-3CDS	ENST00000539379	ENST00000389176		TCGA	RV	LGG	TCGA-DU-A6S2-01A	LMF1	chr16	960931	-	CCDC154	chr16	1489127	-
Frame-shit	ENST00000512091	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000514591	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000511324	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000506700	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000509896	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000545650	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000508693	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000507164	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000507625	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000514157	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000504896	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000514996	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000506720	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000506746	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
Frame-shit	ENST00000508946	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
intron-3CDS	ENST00000508078	ENST00000332700		TCGA	RV	LGG	TCGA-DB-A64X-01A	LPHN3	chr4	62453158	+	DBX2	chr12	45429897	-
5CDS-5UTR	ENST00000512091	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000512091	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000512091	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000512091	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000512091	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514591	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514591	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514591	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514591	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514591	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000511324	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000511324	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000511324	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000511324	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000511324	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506700	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506700	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506700	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506700	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506700	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000509896	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000509896	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000509896	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000509896	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000509896	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000545650	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000545650	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000545650	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000545650	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000545650	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508693	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508693	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508693	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508693	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508693	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507164	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507164	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507164	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507164	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507164	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507625	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507625	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507625	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507625	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000507625	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514157	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514157	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514157	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514157	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514157	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000504896	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000504896	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000504896	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000504896	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000504896	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514996	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514996	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514996	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514996	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000514996	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506720	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506720	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506720	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506720	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506720	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506746	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506746	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506746	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506746	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000506746	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508946	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508946	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508946	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508946	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5CDS-5UTR	ENST00000508946	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
intron-5UTR	ENST00000508078	ENST00000393805		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
intron-5UTR	ENST00000508078	ENST00000377332		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
intron-5UTR	ENST00000508078	ENST00000525834		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
intron-5UTR	ENST00000508078	ENST00000484728		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
intron-5UTR	ENST00000508078	ENST00000393808		TCGA	RV	LGG	TCGA-HT-7477-01B	LPHN3	chr4	62453158	+	ST3GAL5	chr2	86090608	-
5UTR-3CDS	ENST00000298119	ENST00000556509		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-intron	ENST00000298119	ENST00000557704		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-intron	ENST00000298119	ENST00000541685		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-intron	ENST00000298119	ENST00000546183		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
3UTR-3CDS	ENST00000555279	ENST00000556509		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
3UTR-intron	ENST00000555279	ENST00000557704		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
3UTR-intron	ENST00000555279	ENST00000541685		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
3UTR-intron	ENST00000555279	ENST00000546183		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-3CDS	ENST00000554120	ENST00000556509		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-intron	ENST00000554120	ENST00000557704		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-intron	ENST00000554120	ENST00000541685		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
5UTR-intron	ENST00000554120	ENST00000546183		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
intron-3CDS	ENST00000554171	ENST00000556509		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
intron-intron	ENST00000554171	ENST00000557704		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
intron-intron	ENST00000554171	ENST00000541685		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
intron-intron	ENST00000554171	ENST00000546183		TCGA	RV	LGG	TCGA-P5-A77W-01A	LRFN5	chr14	42077765	+	DPF3	chr14	73238601	-
In-frame	ENST00000419488	ENST00000340652		TCGA	RV	LGG	TCGA-HT-7477-01B	MAGI2	chr7	79082336	-	VWC2	chr7	49842307	+
In-frame	ENST00000354212	ENST00000340652		TCGA	RV	LGG	TCGA-HT-7477-01B	MAGI2	chr7	79082336	-	VWC2	chr7	49842307	+
In-frame	ENST00000522391	ENST00000340652		TCGA	RV	LGG	TCGA-HT-7477-01B	MAGI2	chr7	79082336	-	VWC2	chr7	49842307	+
intron-3CDS	ENST00000536571	ENST00000340652		TCGA	RV	LGG	TCGA-HT-7477-01B	MAGI2	chr7	79082336	-	VWC2	chr7	49842307	+
intron-3CDS	ENST00000535697	ENST00000340652		TCGA	RV	LGG	TCGA-HT-7477-01B	MAGI2	chr7	79082336	-	VWC2	chr7	49842307	+
intron-3CDS	ENST00000517762	ENST00000340652		TCGA	RV	LGG	TCGA-HT-7477-01B	MAGI2	chr7	79082336	-	VWC2	chr7	49842307	+
5UTR-3CDS	ENST00000261845	ENST00000268099		TCGA	RV	LGG	TCGA-HT-A614-01A	MAPK6	chr15	52311573	+	SCAMP2	chr15	75146990	-
intron-3CDS	ENST00000558841	ENST00000268099		TCGA	RV	LGG	TCGA-HT-A614-01A	MAPK6	chr15	52311573	+	SCAMP2	chr15	75146990	-
Frame-shit	ENST00000323929	ENST00000526343		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323929	ENST00000282441		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323929	ENST00000537274		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323929	ENST00000345877		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323929	ENST00000531439		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323929	ENST00000524575		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
5CDS-intron	ENST00000323929	ENST00000528834		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000407439	ENST00000526343		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000407439	ENST00000282441		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000407439	ENST00000537274		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000407439	ENST00000345877		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000407439	ENST00000531439		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000407439	ENST00000524575		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
5CDS-intron	ENST00000407439	ENST00000528834		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323977	ENST00000526343		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323977	ENST00000282441		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323977	ENST00000537274		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323977	ENST00000345877		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323977	ENST00000531439		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
Frame-shit	ENST00000323977	ENST00000524575		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
5CDS-intron	ENST00000323977	ENST00000528834		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
In-frame	ENST00000393241	ENST00000526343		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
In-frame	ENST00000393241	ENST00000282441		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
In-frame	ENST00000393241	ENST00000537274		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
In-frame	ENST00000393241	ENST00000345877		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
In-frame	ENST00000393241	ENST00000531439		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
In-frame	ENST00000393241	ENST00000524575		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
5CDS-intron	ENST00000393241	ENST00000528834		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000540013	ENST00000526343		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000540013	ENST00000282441		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000540013	ENST00000537274		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000540013	ENST00000345877		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000540013	ENST00000531439		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000540013	ENST00000524575		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-intron	ENST00000540013	ENST00000528834		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000536144	ENST00000526343		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000536144	ENST00000282441		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000536144	ENST00000537274		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000536144	ENST00000345877		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000536144	ENST00000531439		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-3CDS	ENST00000536144	ENST00000524575		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
intron-intron	ENST00000536144	ENST00000528834		TCGA	RV	LGG	TCGA-DU-5855-01A	MRE11A	chr11	94163077	-	YAP1	chr11	102033187	+
5CDS-5UTR	ENST00000405592	ENST00000409011		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000405592	ENST00000281950		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000405592	ENST00000409566		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000406652	ENST00000409011		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000406652	ENST00000281950		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000406652	ENST00000409566		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000407270	ENST00000409011		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000407270	ENST00000281950		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000407270	ENST00000409566		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000406911	ENST00000409011		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000406911	ENST00000281950		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000406911	ENST00000409566		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000405094	ENST00000409011		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000405094	ENST00000281950		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
5CDS-5UTR	ENST00000405094	ENST00000409566		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
intron-5UTR	ENST00000472767	ENST00000409011		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
intron-5UTR	ENST00000472767	ENST00000281950		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
intron-5UTR	ENST00000472767	ENST00000409566		TCGA	RV	LGG	TCGA-HT-A618-01A	MTA3	chr2	42836724	+	GEMIN6	chr2	39006114	+
In-frame	ENST00000356175	ENST00000306108		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
5CDS-5UTR	ENST00000356175	ENST00000484060		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
In-frame	ENST00000358273	ENST00000306108		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
5CDS-5UTR	ENST00000358273	ENST00000484060		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
In-frame	ENST00000431387	ENST00000306108		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
5CDS-5UTR	ENST00000431387	ENST00000484060		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-3CDS	ENST00000581113	ENST00000306108		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-5UTR	ENST00000581113	ENST00000484060		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-3CDS	ENST00000417592	ENST00000306108		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-5UTR	ENST00000417592	ENST00000484060		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-3CDS	ENST00000444181	ENST00000306108		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-5UTR	ENST00000444181	ENST00000484060		TCGA	RV	LGG	TCGA-FG-7643-01A	NF1	chr17	29497015	+	TRMT61B	chr2	29084174	-
intron-3CDS	ENST00000379028	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000379028	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000379028	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000413765	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000413765	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000413765	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000351718	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000351718	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000351718	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000379024	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000379024	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000379024	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000379022	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000379022	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000379022	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000425651	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000425651	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000425651	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000522550	ENST00000314888		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-3CDS	ENST00000522550	ENST00000540444		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
intron-intron	ENST00000522550	ENST00000464379		TCGA	RV	LGG	TCGA-DU-6402-01A	NRCAM	chr7	107788096	-	TLN1	chr9	35720506	-
Frame-shit	ENST00000554719	ENST00000433700		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000554719	ENST00000443698		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000554719	ENST00000380062		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000554719	ENST00000429045		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000335750	ENST00000433700		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000335750	ENST00000443698		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000335750	ENST00000380062		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000335750	ENST00000429045		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000557594	ENST00000433700		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000557594	ENST00000443698		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000557594	ENST00000380062		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000557594	ENST00000429045		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000281127	ENST00000433700		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000281127	ENST00000443698		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000281127	ENST00000380062		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000281127	ENST00000429045		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000428277	ENST00000433700		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000428277	ENST00000443698		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000428277	ENST00000380062		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000428277	ENST00000429045		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
intron-3CDS	ENST00000556003	ENST00000433700		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
intron-3CDS	ENST00000556003	ENST00000443698		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
intron-3CDS	ENST00000556003	ENST00000380062		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
intron-3CDS	ENST00000556003	ENST00000429045		TCGA	RV	LGG	TCGA-HT-A614-01A	NRXN3	chr14	80164280	+	IFT74	chr9	27029023	+
Frame-shit	ENST00000554719	ENST00000541158		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000554719	ENST00000342443		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000554719	ENST00000298171		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000554719	ENST00000554263		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000554719	ENST00000554435		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
5CDS-intron	ENST00000554719	ENST00000557096		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000335750	ENST00000541158		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000335750	ENST00000342443		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000335750	ENST00000298171		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000335750	ENST00000554263		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000335750	ENST00000554435		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
5CDS-intron	ENST00000335750	ENST00000557096		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000557594	ENST00000541158		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000557594	ENST00000342443		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000557594	ENST00000298171		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000557594	ENST00000554263		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000557594	ENST00000554435		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-intron	ENST00000557594	ENST00000557096		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000281127	ENST00000541158		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000281127	ENST00000342443		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000281127	ENST00000298171		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000281127	ENST00000554263		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000281127	ENST00000554435		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-intron	ENST00000281127	ENST00000557096		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000428277	ENST00000541158		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000428277	ENST00000342443		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000428277	ENST00000298171		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000428277	ENST00000554263		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000428277	ENST00000554435		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-intron	ENST00000428277	ENST00000557096		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556003	ENST00000541158		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556003	ENST00000342443		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556003	ENST00000298171		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556003	ENST00000554263		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556003	ENST00000554435		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
intron-intron	ENST00000556003	ENST00000557096		TCGA	RV	LGG	TCGA-S9-A89Z-01A	NRXN3	chr14	79454484	+	TSHR	chr14	81528492	+
Frame-shit	ENST00000354179	ENST00000522208		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000354179	ENST00000521389		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000354179	ENST00000261947		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000354179	ENST00000520564		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000439151	ENST00000522208		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000439151	ENST00000521389		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000439151	ENST00000261947		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000439151	ENST00000520564		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000347982	ENST00000522208		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000347982	ENST00000521389		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000347982	ENST00000261947		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000347982	ENST00000520564		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000361032	ENST00000522208		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000361032	ENST00000521389		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000361032	ENST00000261947		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000361032	ENST00000520564		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000511258	ENST00000522208		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000511258	ENST00000521389		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000511258	ENST00000261947		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000511258	ENST00000520564		TCGA	RV	LGG	TCGA-RY-A83Z-01A	NSD1	chr5	176563031	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000262077	ENST00000354489		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
Frame-shit	ENST00000262077	ENST00000313243		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
Frame-shit	ENST00000262077	ENST00000474039		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
In-frame	ENST00000262077	ENST00000538030		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
In-frame	ENST00000262077	ENST00000536370		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
Frame-shit	ENST00000537253	ENST00000354489		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
Frame-shit	ENST00000537253	ENST00000313243		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
Frame-shit	ENST00000537253	ENST00000474039		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
In-frame	ENST00000537253	ENST00000538030		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
In-frame	ENST00000537253	ENST00000536370		TCGA	RV	LGG	TCGA-DH-A66G-01A	NUP153	chr6	17675136	-	MAK	chr6	10819173	-
Frame-shit	ENST00000374531	ENST00000380338		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000374531	ENST00000355930		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000374531	ENST00000429426		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000374531	ENST00000475957		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000374531	ENST00000380321		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
Frame-shit	ENST00000448454	ENST00000380338		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000448454	ENST00000355930		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000448454	ENST00000429426		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000448454	ENST00000475957		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000448454	ENST00000380321		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
Frame-shit	ENST00000483909	ENST00000380338		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000483909	ENST00000355930		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000483909	ENST00000429426		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000483909	ENST00000475957		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000483909	ENST00000380321		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
Frame-shit	ENST00000314527	ENST00000380338		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000314527	ENST00000355930		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000314527	ENST00000429426		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000314527	ENST00000475957		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000314527	ENST00000380321		TCGA	RV	LGG	TCGA-FG-A87N-01A	PALM2	chr9	112542813	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000545260	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000545260	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000545260	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000545693	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000545693	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000545693	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000350537	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000350537	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000350537	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000346874	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000346874	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000346874	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374789	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374789	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374789	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374790	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374790	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374790	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374794	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374794	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374794	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374788	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374788	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374788	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000466092	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000466092	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000466092	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374776	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374776	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374776	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000340077	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000340077	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000340077	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000544292	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000544292	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000544292	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374773	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374773	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5CDS-5UTR	ENST00000374773	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000374768	ENST00000378036		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000374768	ENST00000477891		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
intron-5UTR	ENST00000374768	ENST00000277632		TCGA	RV	LGG	TCGA-DU-A6S7-01A	PARD3	chr10	35103804	-	FAM188A	chr10	15838171	-
5UTR-5UTR	ENST00000393958	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000393958	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000393960	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000393960	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000355677	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000355677	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000524491	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000524491	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
intron-5UTR	ENST00000529047	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
intron-5UTR	ENST00000529047	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
intron-5UTR	ENST00000393955	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
intron-5UTR	ENST00000393955	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
intron-5UTR	ENST00000528224	ENST00000255082		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
intron-5UTR	ENST00000528224	ENST00000529256		TCGA	RV	LGG	TCGA-S9-A7QY-01A	PC	chr11	66719901	-	ACY3	chr11	67415060	-
5UTR-5UTR	ENST00000393958	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393958	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393958	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393958	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393960	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393960	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393960	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393960	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000355677	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000355677	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000355677	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000355677	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000524491	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000524491	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000524491	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000524491	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000529047	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000529047	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000529047	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000529047	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000393955	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000393955	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000393955	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000393955	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000528224	ENST00000312293		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000528224	ENST00000393681		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000528224	ENST00000393679		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000528224	ENST00000393676		TCGA	RV	LGG	TCGA-FG-A4MY-01A	PC	chr11	66719901	-	FOLR1	chr11	71903210	+
In-frame	ENST00000302746	ENST00000415676		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
In-frame	ENST00000302746	ENST00000288197		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
In-frame	ENST00000302746	ENST00000474759		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
5CDS-5UTR	ENST00000302746	ENST00000490478		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
5CDS-intron	ENST00000302746	ENST00000478261		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
In-frame	ENST00000485460	ENST00000415676		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
In-frame	ENST00000485460	ENST00000288197		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
In-frame	ENST00000485460	ENST00000474759		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
5CDS-5UTR	ENST00000485460	ENST00000490478		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
5CDS-intron	ENST00000485460	ENST00000478261		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
intron-3CDS	ENST00000474765	ENST00000415676		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
intron-3CDS	ENST00000474765	ENST00000288197		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
intron-3CDS	ENST00000474765	ENST00000474759		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
intron-5UTR	ENST00000474765	ENST00000490478		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
intron-intron	ENST00000474765	ENST00000478261		TCGA	RV	LGG	TCGA-DU-A7TA-01A	PDHB	chr3	58419358	-	CACNA2D3	chr3	54354469	+
Frame-shit	ENST00000263666	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
Frame-shit	ENST00000263666	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
Frame-shit	ENST00000263666	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
5CDS-intron	ENST00000263666	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000466780	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000466780	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000466780	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-intron	ENST00000466780	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
Frame-shit	ENST00000308537	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
Frame-shit	ENST00000308537	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
Frame-shit	ENST00000308537	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
5CDS-intron	ENST00000308537	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000462146	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000462146	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000462146	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-intron	ENST00000462146	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000535920	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000535920	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000535920	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-intron	ENST00000535920	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000479530	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000479530	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000479530	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-intron	ENST00000479530	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000466348	ENST00000297784		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000466348	ENST00000340019		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-3CDS	ENST00000466348	ENST00000396237		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
intron-intron	ENST00000466348	ENST00000486417		TCGA	RV	LGG	TCGA-HT-7476-01A	PDZRN3	chr3	73651505	-	TMC1	chr9	75403255	+
Frame-shit	ENST00000531066	ENST00000389817		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
Frame-shit	ENST00000531066	ENST00000302539		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
5CDS-intron	ENST00000531066	ENST00000528202		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
Frame-shit	ENST00000355661	ENST00000389817		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
Frame-shit	ENST00000355661	ENST00000302539		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
5CDS-intron	ENST00000355661	ENST00000528202		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
Frame-shit	ENST00000448080	ENST00000389817		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
Frame-shit	ENST00000448080	ENST00000302539		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
5CDS-intron	ENST00000448080	ENST00000528202		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
intron-3CDS	ENST00000532079	ENST00000389817		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
intron-3CDS	ENST00000532079	ENST00000302539		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
intron-intron	ENST00000532079	ENST00000528202		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
intron-3CDS	ENST00000332954	ENST00000389817		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
intron-3CDS	ENST00000332954	ENST00000302539		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
intron-intron	ENST00000332954	ENST00000528202		TCGA	RV	LGG	TCGA-DB-A4XH-01A	PLEKHA7	chr11	17035536	-	ABCC8	chr11	17485151	-
5CDS-5UTR	ENST00000418604	ENST00000367858		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000524929		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000413996		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000237305		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000367857		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000528577		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000475719		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000418604	ENST00000489458		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-5UTR	ENST00000303958	ENST00000367858		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000524929		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000413996		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000237305		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000367857		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000528577		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000475719		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000303958	ENST00000489458		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-5UTR	ENST00000361621	ENST00000367858		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000524929		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000413996		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000237305		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000367857		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000528577		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000475719		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-intron	ENST00000361621	ENST00000489458		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-5UTR	ENST00000466486	ENST00000367858		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000524929		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000413996		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000237305		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000367857		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000528577		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000475719		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
intron-intron	ENST00000466486	ENST00000489458		TCGA	RV	LGG	TCGA-HT-7902-01A	PLP1	chrX	103047545	+	SGK1	chr6	134639049	-
5CDS-5UTR	ENST00000262848	ENST00000380833		TCGA	RV	LGG	TCGA-DU-7299-01A	PRKX	chrX	3631129	-	CLCN4	chrX	10126329	+
5CDS-intron	ENST00000262848	ENST00000380829		TCGA	RV	LGG	TCGA-DU-7299-01A	PRKX	chrX	3631129	-	CLCN4	chrX	10126329	+
5CDS-intron	ENST00000262848	ENST00000421085		TCGA	RV	LGG	TCGA-DU-7299-01A	PRKX	chrX	3631129	-	CLCN4	chrX	10126329	+
intron-5UTR	ENST00000425240	ENST00000380833		TCGA	RV	LGG	TCGA-DU-7299-01A	PRKX	chrX	3631129	-	CLCN4	chrX	10126329	+
intron-intron	ENST00000425240	ENST00000380829		TCGA	RV	LGG	TCGA-DU-7299-01A	PRKX	chrX	3631129	-	CLCN4	chrX	10126329	+
intron-intron	ENST00000425240	ENST00000421085		TCGA	RV	LGG	TCGA-DU-7299-01A	PRKX	chrX	3631129	-	CLCN4	chrX	10126329	+
5UTR-3CDS	ENST00000588552	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000588552	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-5UTR	ENST00000588552	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000262963	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-5UTR	ENST00000262963	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000372412	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-5UTR	ENST00000372412	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000348075	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-5UTR	ENST00000348075	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000357368	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-5UTR	ENST00000357368	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-3CDS	ENST00000353284	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
5UTR-5UTR	ENST00000353284	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000587303	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-5UTR	ENST00000587303	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000588012	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-5UTR	ENST00000588012	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000592099	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-5UTR	ENST00000592099	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000389341		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000342301		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000533720		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000526816		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000529067		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000560558		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000560398		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-3CDS	ENST00000590509	ENST00000529952		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-5UTR	ENST00000590509	ENST00000524801		TCGA	RV	LGG	TCGA-P5-A5EU-01A	PTPRS	chr19	5340675	-	POU2F2	chr19	42626728	-
intron-5UTR	ENST00000413953	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000413953	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-intron	ENST00000413953	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-5UTR	ENST00000347140	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-5UTR	ENST00000347140	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-intron	ENST00000347140	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000358907	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000358907	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-intron	ENST00000358907	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-5UTR	ENST00000402412	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-5UTR	ENST00000402412	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-intron	ENST00000402412	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000441731	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000441731	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-intron	ENST00000441731	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000403821	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000403821	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-intron	ENST00000403821	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000546843	ENST00000543426		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-5UTR	ENST00000546843	ENST00000228682		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
intron-intron	ENST00000546843	ENST00000546141		TCGA	RV	LGG	TCGA-FG-A70Z-01A	R3HDM2	chr12	57789532	-	GLI1	chr12	57858456	+
5UTR-3CDS	ENST00000378823	ENST00000383710		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5UTR-3CDS	ENST00000378823	ENST00000357948		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5UTR-3CDS	ENST00000378823	ENST00000283269		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5UTR-intron	ENST00000378823	ENST00000490353		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5UTR-intron	ENST00000378823	ENST00000462768		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
In-frame	ENST00000265335	ENST00000383710		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
In-frame	ENST00000265335	ENST00000357948		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
In-frame	ENST00000265335	ENST00000283269		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5CDS-intron	ENST00000265335	ENST00000490353		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5CDS-intron	ENST00000265335	ENST00000462768		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
intron-3CDS	ENST00000487596	ENST00000383710		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
intron-3CDS	ENST00000487596	ENST00000357948		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
intron-3CDS	ENST00000487596	ENST00000283269		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
intron-intron	ENST00000487596	ENST00000490353		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
intron-intron	ENST00000487596	ENST00000462768		TCGA	RV	LGG	TCGA-DU-7014-01A	RAD50	chr5	131911620	+	CADPS	chr3	62578423	-
5CDS-5UTR	ENST00000327155	ENST00000432176		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000327155	ENST00000409923		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-intron	ENST00000327155	ENST00000498833		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000327155	ENST00000409763		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000399722	ENST00000432176		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000399722	ENST00000409923		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-intron	ENST00000399722	ENST00000498833		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000399722	ENST00000409763		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000399725	ENST00000432176		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000399725	ENST00000409923		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-intron	ENST00000399725	ENST00000498833		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000399725	ENST00000409763		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000360790	ENST00000432176		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000360790	ENST00000409923		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-intron	ENST00000360790	ENST00000498833		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000360790	ENST00000409763		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
intron-5UTR	ENST00000581687	ENST00000432176		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
intron-5UTR	ENST00000581687	ENST00000409923		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
intron-intron	ENST00000581687	ENST00000498833		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
intron-5UTR	ENST00000581687	ENST00000409763		TCGA	RV	LGG	TCGA-HT-7477-01B	RBBP8	chr18	20564953	+	FAM126A	chr7	23030758	-
5CDS-5UTR	ENST00000337907	ENST00000306601		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000337907	ENST00000427146		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000337907	ENST00000366471		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000337907	ENST00000366469		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000337907	ENST00000451251		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-intron	ENST00000337907	ENST00000468455		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000337907	ENST00000391820		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000377464	ENST00000306601		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000377464	ENST00000427146		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000377464	ENST00000366471		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000377464	ENST00000366469		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000377464	ENST00000451251		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-intron	ENST00000377464	ENST00000468455		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000377464	ENST00000391820		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400907	ENST00000306601		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400907	ENST00000427146		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400907	ENST00000366471		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400907	ENST00000366469		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400907	ENST00000451251		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-intron	ENST00000400907	ENST00000468455		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400907	ENST00000391820		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400908	ENST00000306601		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400908	ENST00000427146		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400908	ENST00000366471		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400908	ENST00000366469		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400908	ENST00000451251		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-intron	ENST00000400908	ENST00000468455		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
5CDS-5UTR	ENST00000400908	ENST00000391820		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000476556	ENST00000306601		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000476556	ENST00000427146		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000476556	ENST00000366471		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000476556	ENST00000366469		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000476556	ENST00000451251		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-intron	ENST00000476556	ENST00000468455		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000476556	ENST00000391820		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000460659	ENST00000306601		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000460659	ENST00000427146		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000460659	ENST00000366471		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000460659	ENST00000366469		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000460659	ENST00000451251		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-intron	ENST00000460659	ENST00000468455		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-5UTR	ENST00000460659	ENST00000391820		TCGA	RV	LGG	TCGA-DB-A64O-01A	RERE	chr1	8525985	-	ZNF692	chr1	249152520	-
intron-3CDS	ENST00000425933	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000425933	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000543599	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000543599	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
Frame-shit	ENST00000329082	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
Frame-shit	ENST00000329082	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000542321	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000542321	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000538818	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000538818	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000557301	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000557301	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000557420	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000557420	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000556658	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000556658	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000556087	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000556087	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000555584	ENST00000544600		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
intron-3CDS	ENST00000555584	ENST00000268122		TCGA	RV	LGG	TCGA-HT-A614-01A	RGMA	chr15	93632148	-	RHCG	chr15	90026448	-
5CDS-intron	ENST00000296255	ENST00000367545		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000296255	ENST00000367526		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000296255	ENST00000480333		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
intron-intron	ENST00000497289	ENST00000367545		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
intron-intron	ENST00000497289	ENST00000367526		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
intron-intron	ENST00000497289	ENST00000480333		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
intron-intron	ENST00000490166	ENST00000367545		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
intron-intron	ENST00000490166	ENST00000367526		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
intron-intron	ENST00000490166	ENST00000480333		TCGA	RV	LGG	TCGA-HT-7854-01A	RPN1	chr3	128338817	-	UTRN	chr6	144665237	+
3UTR-5UTR	ENST00000492220	ENST00000368708		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
3UTR-5UTR	ENST00000492220	ENST00000487430		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
3UTR-intron	ENST00000492220	ENST00000497140		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
3UTR-5UTR	ENST00000492220	ENST00000368710		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
3UTR-5UTR	ENST00000492220	ENST00000368709		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
3UTR-5UTR	ENST00000492220	ENST00000368707		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000401000	ENST00000368708		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000401000	ENST00000487430		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000401000	ENST00000497140		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000401000	ENST00000368710		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000401000	ENST00000368709		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000401000	ENST00000368707		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000539519	ENST00000368708		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000539519	ENST00000487430		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000539519	ENST00000497140		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000539519	ENST00000368710		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000539519	ENST00000368709		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000539519	ENST00000368707		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369067	ENST00000368708		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369067	ENST00000487430		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000369067	ENST00000497140		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369067	ENST00000368710		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369067	ENST00000368709		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369067	ENST00000368707		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369068	ENST00000368708		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369068	ENST00000487430		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000369068	ENST00000497140		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369068	ENST00000368710		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369068	ENST00000368709		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000369068	ENST00000368707		TCGA	RV	LGG	TCGA-HT-7477-01B	RPRD2	chr1	150390201	+	S100A2	chr1	153536363	-
In-frame	ENST00000379933	ENST00000330636		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379933	ENST00000468929		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379933	ENST00000464010		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379933	ENST00000480566		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379933	ENST00000500576		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379933	ENST00000606472		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
In-frame	ENST00000379938	ENST00000330636		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379938	ENST00000468929		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379938	ENST00000464010		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379938	ENST00000480566		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379938	ENST00000500576		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000379938	ENST00000606472		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
In-frame	ENST00000334984	ENST00000330636		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000334984	ENST00000468929		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000334984	ENST00000464010		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000334984	ENST00000480566		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000334984	ENST00000500576		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000334984	ENST00000606472		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
In-frame	ENST00000349384	ENST00000330636		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000349384	ENST00000468929		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000349384	ENST00000464010		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000349384	ENST00000480566		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000349384	ENST00000500576		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000349384	ENST00000606472		TCGA	RV	LGG	TCGA-FG-6690-01A	RREB1	chr6	7189555	+	LYRM4	chr6	5216971	-
5CDS-5UTR	ENST00000247225	ENST00000555166		TCGA	RV	LGG	TCGA-S9-A6WM-01A	SGPP1	chr14	64193979	-	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000247225	ENST00000556492		TCGA	RV	LGG	TCGA-S9-A6WM-01A	SGPP1	chr14	64193979	-	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000247225	ENST00000554703		TCGA	RV	LGG	TCGA-S9-A6WM-01A	SGPP1	chr14	64193979	-	NAA30	chr14	57863470	+
5CDS-intron	ENST00000345662	ENST00000404397		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000345662	ENST00000395323		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000345662	ENST00000406087		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000345662	ENST00000401506		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-3UTR	ENST00000345662	ENST00000467242		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-3UTR	ENST00000345662	ENST00000407930		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000315285	ENST00000404397		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000315285	ENST00000395323		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000315285	ENST00000406087		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-intron	ENST00000315285	ENST00000401506		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-3UTR	ENST00000315285	ENST00000467242		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5CDS-3UTR	ENST00000315285	ENST00000407930		TCGA	RV	LGG	TCGA-HT-A74J-01A	SPAST	chr2	32289315	+	LBH	chr2	30480299	+
5UTR-3CDS	ENST00000393328	ENST00000511072		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393328	ENST00000442529		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393328	ENST00000378398		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393328	ENST00000441472		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393328	ENST00000378391		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393328	ENST00000514189		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393328	ENST00000270722		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3UTR	ENST00000393328	ENST00000512462		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000511072		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000442529		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000378398		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000441472		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000378391		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000514189		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000393331	ENST00000270722		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3UTR	ENST00000393331	ENST00000512462		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000511072		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000442529		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000378398		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000441472		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000378391		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000514189		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000347630	ENST00000270722		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3UTR	ENST00000347630	ENST00000512462		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000511072		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000442529		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000378398		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000441472		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000378391		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000514189		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000504102	ENST00000270722		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3UTR	ENST00000504102	ENST00000512462		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000511072		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000442529		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000378398		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000441472		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000378391		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000514189		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3CDS	ENST00000503676	ENST00000270722		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
intron-3UTR	ENST00000503676	ENST00000512462		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000511072		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000442529		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000378398		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000441472		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000378391		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000514189		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000513080	ENST00000270722		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3UTR	ENST00000513080	ENST00000512462		TCGA	RV	LGG	TCGA-DU-A5TP-01A	SPOP	chr17	47755295	-	PRDM16	chr1	3301716	+
5UTR-3CDS	ENST00000261716	ENST00000226230		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-5UTR	ENST00000261716	ENST00000583381		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-5UTR	ENST00000261716	ENST00000582113		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-5UTR	ENST00000261716	ENST00000336687		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-3CDS	ENST00000536202	ENST00000226230		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-5UTR	ENST00000536202	ENST00000583381		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-5UTR	ENST00000536202	ENST00000582113		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
5UTR-5UTR	ENST00000536202	ENST00000336687		TCGA	RV	LGG	TCGA-DB-A75P-01A	TAOK1	chr17	27718042	+	TMEM97	chr17	26652529	+
intron-3CDS	ENST00000545826	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000545826	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000545826	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000545826	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-intron	ENST00000545826	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000513237	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000513237	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000513237	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000513237	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-intron	ENST00000513237	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000540549	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000540549	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000540549	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000540549	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-intron	ENST00000540549	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-3CDS	ENST00000380013	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-3CDS	ENST00000380013	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-5UTR	ENST00000380013	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-5UTR	ENST00000380013	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-intron	ENST00000380013	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-3CDS	ENST00000305737	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-3CDS	ENST00000305737	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-5UTR	ENST00000305737	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-5UTR	ENST00000305737	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-intron	ENST00000305737	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-3CDS	ENST00000394764	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-3CDS	ENST00000394764	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-5UTR	ENST00000394764	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-5UTR	ENST00000394764	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
5UTR-intron	ENST00000394764	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
3UTR-3CDS	ENST00000504042	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
3UTR-3CDS	ENST00000504042	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
3UTR-5UTR	ENST00000504042	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
3UTR-5UTR	ENST00000504042	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
3UTR-intron	ENST00000504042	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000413648	ENST00000394897		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-3CDS	ENST00000413648	ENST00000394899		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000413648	ENST00000407820		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-5UTR	ENST00000413648	ENST00000237653		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
intron-intron	ENST00000413648	ENST00000504257		TCGA	RV	LGG	TCGA-HT-7472-01A	TET2	chr4	106111662	+	ADH6	chr4	100137419	-
In-frame	ENST00000359440	ENST00000538348		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000359440	ENST00000451195		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000359440	ENST00000304177		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000359440	ENST00000513601		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000359440	ENST00000565712		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
In-frame	ENST00000558726	ENST00000538348		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000558726	ENST00000451195		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000558726	ENST00000304177		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000558726	ENST00000513601		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
5CDS-intron	ENST00000558726	ENST00000565712		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83657909	-
Frame-shit	ENST00000358024	ENST00000271588		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
Frame-shit	ENST00000358024	ENST00000367492		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
5CDS-3UTR	ENST00000358024	ENST00000485744		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000545499	ENST00000271588		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000545499	ENST00000367492		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3UTR	ENST00000545499	ENST00000485744		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000495538	ENST00000271588		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000495538	ENST00000367492		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3UTR	ENST00000495538	ENST00000485744		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000330675	ENST00000271588		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000330675	ENST00000367492		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3UTR	ENST00000330675	ENST00000485744		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000329800	ENST00000271588		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3CDS	ENST00000329800	ENST00000367492		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
intron-3UTR	ENST00000329800	ENST00000485744		TCGA	RV	LGG	TCGA-DU-6542-01A	TMCC2	chr1	205197899	+	HMCN1	chr1	185931650	+
5CDS-5UTR	ENST00000399537	ENST00000421797		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000399537	ENST00000429546		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000399537	ENST00000352689		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-intron	ENST00000399537	ENST00000498778		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000430969	ENST00000421797		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000430969	ENST00000429546		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000430969	ENST00000352689		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
5CDS-intron	ENST00000430969	ENST00000498778		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000399434	ENST00000421797		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000399434	ENST00000429546		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000399434	ENST00000352689		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
intron-intron	ENST00000399434	ENST00000498778		TCGA	RV	LGG	TCGA-HT-A617-01A	TNRC18	chr7	5460691	-	MKLN1	chr7	131060183	+
Frame-shit	ENST00000360538	ENST00000380548		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
Frame-shit	ENST00000360538	ENST00000380545		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
5CDS-intron	ENST00000360538	ENST00000327883		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
5CDS-intron	ENST00000360538	ENST00000431052		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
5CDS-intron	ENST00000360538	ENST00000380570		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
5CDS-intron	ENST00000360538	ENST00000380566		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
5CDS-intron	ENST00000360538	ENST00000276935		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
5CDS-intron	ENST00000360538	ENST00000496521		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-3CDS	ENST00000379858	ENST00000380548		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-3CDS	ENST00000379858	ENST00000380545		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-intron	ENST00000379858	ENST00000327883		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-intron	ENST00000379858	ENST00000431052		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-intron	ENST00000379858	ENST00000380570		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-intron	ENST00000379858	ENST00000380566		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-intron	ENST00000379858	ENST00000276935		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-intron	ENST00000379858	ENST00000496521		TCGA	RV	LGG	TCGA-IK-7675-01A	TOPORS	chr9	32550772	-	ADAMTSL1	chr9	18826282	+
intron-3CDS	ENST00000437508	ENST00000358220		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
intron-intron	ENST00000437508	ENST00000381329		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
intron-intron	ENST00000437508	ENST00000263150		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
intron-intron	ENST00000437508	ENST00000482165		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
3UTR-3CDS	ENST00000494872	ENST00000358220		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
3UTR-intron	ENST00000494872	ENST00000381329		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
3UTR-intron	ENST00000494872	ENST00000263150		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
3UTR-intron	ENST00000494872	ENST00000482165		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
In-frame	ENST00000338700	ENST00000358220		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
5CDS-intron	ENST00000338700	ENST00000381329		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
5CDS-intron	ENST00000338700	ENST00000263150		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
5CDS-intron	ENST00000338700	ENST00000482165		TCGA	RV	LGG	TCGA-E1-5304-01A	TRIM2	chr4	154125712	+	WDR37	chr10	1149542	+
Frame-shit	ENST00000305798	ENST00000296420		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
5CDS-intron	ENST00000305798	ENST00000305864		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
5CDS-intron	ENST00000305798	ENST00000511970		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
5CDS-intron	ENST00000305798	ENST00000502327		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-3CDS	ENST00000505184	ENST00000296420		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-intron	ENST00000505184	ENST00000305864		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-intron	ENST00000505184	ENST00000511970		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-intron	ENST00000505184	ENST00000502327		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-3CDS	ENST00000509168	ENST00000296420		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-intron	ENST00000509168	ENST00000305864		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-intron	ENST00000509168	ENST00000511970		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-intron	ENST00000509168	ENST00000502327		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN5	chr4	99579297	-	EMCN	chr4	101344561	-
intron-3CDS	ENST00000537971	ENST00000544024		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000537971	ENST00000423955		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000537971	ENST00000293525		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
5UTR-3CDS	ENST00000011898	ENST00000544024		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
5UTR-3CDS	ENST00000011898	ENST00000423955		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
5UTR-3CDS	ENST00000011898	ENST00000293525		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000407263	ENST00000544024		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000407263	ENST00000423955		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000407263	ENST00000293525		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000492305	ENST00000544024		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000492305	ENST00000423955		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
intron-3CDS	ENST00000492305	ENST00000293525		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT86	chr12	52699024	+
Frame-shit	ENST00000353364	ENST00000435070		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000353364	ENST00000456847		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000353364	ENST00000266679		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000353364	ENST00000550987		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000353364	ENST00000551516		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000280377	ENST00000435070		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000280377	ENST00000456847		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000280377	ENST00000266679		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000280377	ENST00000550987		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000280377	ENST00000551516		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000393654	ENST00000435070		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000393654	ENST00000456847		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000393654	ENST00000266679		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000393654	ENST00000550987		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000393654	ENST00000551516		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
3UTR-3CDS	ENST00000550632	ENST00000435070		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
3UTR-3CDS	ENST00000550632	ENST00000456847		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
3UTR-3CDS	ENST00000550632	ENST00000266679		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
3UTR-3UTR	ENST00000550632	ENST00000550987		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
3UTR-3UTR	ENST00000550632	ENST00000551516		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000312635	ENST00000435070		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000312635	ENST00000456847		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
Frame-shit	ENST00000312635	ENST00000266679		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000312635	ENST00000550987		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-3UTR	ENST00000312635	ENST00000551516		TCGA	RV	LGG	TCGA-FG-A70Z-01A	USP15	chr12	62654284	+	CPSF6	chr12	69644909	+
5CDS-5UTR	ENST00000437079	ENST00000540274		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000437079	ENST00000377307		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000437079	ENST00000276826		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-intron	ENST00000437079	ENST00000528810		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000287546	ENST00000540274		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000287546	ENST00000377307		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000287546	ENST00000276826		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-intron	ENST00000287546	ENST00000528810		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000436792	ENST00000540274		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000436792	ENST00000377307		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000436792	ENST00000276826		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-intron	ENST00000436792	ENST00000528810		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000446204	ENST00000540274		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000446204	ENST00000377307		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-5UTR	ENST00000446204	ENST00000276826		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5CDS-intron	ENST00000446204	ENST00000528810		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000424463	ENST00000540274		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000424463	ENST00000377307		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000424463	ENST00000276826		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-intron	ENST00000424463	ENST00000528810		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000463687	ENST00000540274		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000463687	ENST00000377307		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-5UTR	ENST00000463687	ENST00000276826		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
intron-intron	ENST00000463687	ENST00000528810		TCGA	RV	LGG	TCGA-HT-7676-01A	VPS8	chr3	184573606	+	ARHGAP39	chr8	145831080	-
5UTR-5UTR	ENST00000462705	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-3UTR	ENST00000462705	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-intron	ENST00000462705	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000462705	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000462705	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000393785	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-3UTR	ENST00000393785	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-intron	ENST00000393785	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000393785	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000393785	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000481632	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-3UTR	ENST00000481632	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-intron	ENST00000481632	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000481632	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000481632	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000471418	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-3UTR	ENST00000471418	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-intron	ENST00000471418	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000471418	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000471418	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000357258	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-3UTR	ENST00000357258	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-intron	ENST00000357258	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000357258	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000357258	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000464560	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-3UTR	ENST00000464560	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-intron	ENST00000464560	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000464560	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5UTR-5UTR	ENST00000464560	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
intron-5UTR	ENST00000488663	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
intron-3UTR	ENST00000488663	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
intron-intron	ENST00000488663	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
intron-5UTR	ENST00000488663	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
intron-5UTR	ENST00000488663	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000474710	ENST00000462069		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5CDS-3UTR	ENST00000474710	ENST00000486169		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5CDS-intron	ENST00000474710	ENST00000232519		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000474710	ENST00000494481		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000474710	ENST00000542214		TCGA	RV	LGG	TCGA-HT-7689-01A	ZBTB20	chr3	114099064	-	C3orf14	chr3	62305396	+
3UTR-3CDS	ENST00000410075	ENST00000272427		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
3UTR-5UTR	ENST00000410075	ENST00000490919		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
3UTR-intron	ENST00000410075	ENST00000410104		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-3CDS	ENST00000377802	ENST00000272427		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-5UTR	ENST00000377802	ENST00000490919		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-intron	ENST00000377802	ENST00000410104		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-3CDS	ENST00000355812	ENST00000272427		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-5UTR	ENST00000355812	ENST00000490919		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-intron	ENST00000355812	ENST00000410104		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-3CDS	ENST00000409544	ENST00000272427		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-5UTR	ENST00000409544	ENST00000490919		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-intron	ENST00000409544	ENST00000410104		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-3CDS	ENST00000264447	ENST00000272427		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-5UTR	ENST00000264447	ENST00000490919		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-intron	ENST00000264447	ENST00000410104		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-3CDS	ENST00000409407	ENST00000272427		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-5UTR	ENST00000409407	ENST00000490919		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
intron-intron	ENST00000409407	ENST00000410104		TCGA	RV	LGG	TCGA-HT-7902-01A	ZNF638	chr2	71503884	+	EXOC6B	chr2	72411316	-
In-frame	ENST00000301732	ENST00000300145		TCGA	RV	LGG	TCGA-TM-A84I-01A	ABCA3	chr16	2358451	-	XRCC6BP1	chr12	58340778	+
5CDS-intron	ENST00000301732	ENST00000546709		TCGA	RV	LGG	TCGA-TM-A84I-01A	ABCA3	chr16	2358451	-	XRCC6BP1	chr12	58340778	+
intron-3CDS	ENST00000382381	ENST00000300145		TCGA	RV	LGG	TCGA-TM-A84I-01A	ABCA3	chr16	2358451	-	XRCC6BP1	chr12	58340778	+
intron-intron	ENST00000382381	ENST00000546709		TCGA	RV	LGG	TCGA-TM-A84I-01A	ABCA3	chr16	2358451	-	XRCC6BP1	chr12	58340778	+
intron-3CDS	ENST00000567910	ENST00000300145		TCGA	RV	LGG	TCGA-TM-A84I-01A	ABCA3	chr16	2358451	-	XRCC6BP1	chr12	58340778	+
intron-intron	ENST00000567910	ENST00000546709		TCGA	RV	LGG	TCGA-TM-A84I-01A	ABCA3	chr16	2358451	-	XRCC6BP1	chr12	58340778	+
intron-5UTR	ENST00000464611	ENST00000256103		TCGA	RV	LGG	TCGA-DH-A669-01A	ACTB	chr7	5567255	-	PMP2	chr8	82359674	-
intron-5UTR	ENST00000464611	ENST00000519260		TCGA	RV	LGG	TCGA-DH-A669-01A	ACTB	chr7	5567255	-	PMP2	chr8	82359674	-
intron-5UTR	ENST00000331789	ENST00000256103		TCGA	RV	LGG	TCGA-DH-A669-01A	ACTB	chr7	5567255	-	PMP2	chr8	82359674	-
intron-5UTR	ENST00000331789	ENST00000519260		TCGA	RV	LGG	TCGA-DH-A669-01A	ACTB	chr7	5567255	-	PMP2	chr8	82359674	-
In-frame	ENST00000446856	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000446856	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000446856	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000446856	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000446856	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000446856	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000264758	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000264758	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000264758	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000264758	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000264758	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000264758	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000398125	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000398125	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000398125	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000398125	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000398125	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000398125	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000513328	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000513328	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000513328	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000513328	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000513328	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000513328	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000503455	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000503455	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000503455	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000503455	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000503455	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000503455	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000355842	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000355842	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
In-frame	ENST00000355842	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000355842	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000355842	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000355842	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000398123	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000398123	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000398123	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000398123	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000398123	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000398123	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
3UTR-3CDS	ENST00000398129	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
3UTR-3CDS	ENST00000398129	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
3UTR-3CDS	ENST00000398129	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
3UTR-intron	ENST00000398129	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
3UTR-intron	ENST00000398129	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
3UTR-intron	ENST00000398129	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000538860	ENST00000357681		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000538860	ENST00000391954		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000538860	ENST00000367218		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000538860	ENST00000367219		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000538860	ENST00000341360		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000538860	ENST00000466407		TCGA	RV	LGG	TCGA-HT-7606-01A	ADD1	chr4	2931789	+	ATP2B4	chr1	203671172	+
intron-intron	ENST00000366535	ENST00000337198		TCGA	RV	LGG	TCGA-DU-A7TA-01A	ADSS	chr1	244613292	-	AZIN1	chr8	103862372	-
intron-5UTR	ENST00000366535	ENST00000347770		TCGA	RV	LGG	TCGA-DU-A7TA-01A	ADSS	chr1	244613292	-	AZIN1	chr8	103862372	-
intron-intron	ENST00000366535	ENST00000522311		TCGA	RV	LGG	TCGA-DU-A7TA-01A	ADSS	chr1	244613292	-	AZIN1	chr8	103862372	-
intron-intron	ENST00000462358	ENST00000337198		TCGA	RV	LGG	TCGA-DU-A7TA-01A	ADSS	chr1	244613292	-	AZIN1	chr8	103862372	-
intron-5UTR	ENST00000462358	ENST00000347770		TCGA	RV	LGG	TCGA-DU-A7TA-01A	ADSS	chr1	244613292	-	AZIN1	chr8	103862372	-
intron-intron	ENST00000462358	ENST00000522311		TCGA	RV	LGG	TCGA-DU-A7TA-01A	ADSS	chr1	244613292	-	AZIN1	chr8	103862372	-
intron-3CDS	ENST00000560302	ENST00000394480		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000557856		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000357724		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000355254		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000360948		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000542733		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000558676		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000317501		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000560302	ENST00000558306		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000560302	ENST00000540489		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000394480		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000557856		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000357724		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000355254		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000360948		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000542733		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000558676		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000394518	ENST00000317501		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000394518	ENST00000558306		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000394518	ENST00000540489		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000394480		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000557856		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000357724		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000355254		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000360948		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000542733		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000558676		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000361243	ENST00000317501		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000361243	ENST00000558306		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000361243	ENST00000540489		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000394480		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000557856		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000357724		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000355254		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000360948		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000542733		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000558676		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000317501		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-5UTR	ENST00000560579	ENST00000558306		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
3UTR-5UTR	ENST00000560579	ENST00000540489		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000394480		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000557856		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000357724		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000355254		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000360948		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000542733		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000558676		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000394510	ENST00000317501		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000394510	ENST00000558306		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000394510	ENST00000540489		TCGA	RV	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86213061	+	NTRK3	chr15	88576276	-
In-frame	ENST00000431231	ENST00000004921		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	ARHGAP23	chr17	36623572	+	CCL18	chr17	34397807	+
In-frame	ENST00000437668	ENST00000004921		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	ARHGAP23	chr17	36623572	+	CCL18	chr17	34397807	+
intron-3CDS	ENST00000582409	ENST00000004921		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	ARHGAP23	chr17	36623572	+	CCL18	chr17	34397807	+
In-frame	ENST00000443378	ENST00000004921		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	ARHGAP23	chr17	36623572	+	CCL18	chr17	34397807	+
5CDS-5UTR	ENST00000377275	ENST00000319445		TCGA	RV	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66503986	+
5CDS-5UTR	ENST00000377275	ENST00000360242		TCGA	RV	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66503986	+
5CDS-intron	ENST00000377275	ENST00000584156		TCGA	RV	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66503986	+
5CDS-5UTR	ENST00000377275	ENST00000358653		TCGA	RV	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66503986	+
5CDS-3UTR	ENST00000377275	ENST00000577772		TCGA	RV	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66503986	+
In-frame	ENST00000373996	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
5CDS-5UTR	ENST00000373996	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
In-frame	ENST00000313400	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
5CDS-5UTR	ENST00000313400	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
In-frame	ENST00000361209	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
5CDS-5UTR	ENST00000361209	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
5UTR-3CDS	ENST00000361477	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
5UTR-5UTR	ENST00000361477	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
intron-3CDS	ENST00000288520	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
intron-5UTR	ENST00000288520	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
intron-3CDS	ENST00000341734	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
intron-5UTR	ENST00000341734	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
intron-3CDS	ENST00000358637	ENST00000374692		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
intron-5UTR	ENST00000358637	ENST00000374688		TCGA	RV	LGG	TCGA-DU-A6S7-01A	ASTN2	chr9	119858323	-	TMEM38B	chr9	108467878	+
5UTR-intron	ENST00000415149	ENST00000447054		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000415149	ENST00000265022		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000415149	ENST00000344484		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000415149	ENST00000382164		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000415149	ENST00000544847		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-intron	ENST00000402543	ENST00000447054		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000402543	ENST00000265022		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000402543	ENST00000344484		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000402543	ENST00000382164		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000402543	ENST00000544847		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-intron	ENST00000325805	ENST00000447054		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000325805	ENST00000265022		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000325805	ENST00000344484		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000325805	ENST00000382164		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000325805	ENST00000544847		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-intron	ENST00000416476	ENST00000447054		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000416476	ENST00000265022		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000416476	ENST00000344484		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000416476	ENST00000382164		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5UTR-5UTR	ENST00000416476	ENST00000544847		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-intron	ENST00000406780	ENST00000447054		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000406780	ENST00000265022		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000406780	ENST00000344484		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000406780	ENST00000382164		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000406780	ENST00000544847		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-intron	ENST00000473542	ENST00000447054		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000473542	ENST00000265022		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000473542	ENST00000344484		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000473542	ENST00000382164		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
intron-5UTR	ENST00000473542	ENST00000544847		TCGA	RV	LGG	TCGA-P5-A733-01A	BBX	chr3	107245245	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000377022	ENST00000376637		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377022	ENST00000400895		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377022	ENST00000491346		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377022	ENST00000376629		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377022	ENST00000376627		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377022	ENST00000314340		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377022	ENST00000452018		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377022	ENST00000510878		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000344008	ENST00000376637		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000344008	ENST00000400895		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000344008	ENST00000491346		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000344008	ENST00000376629		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000344008	ENST00000376627		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000344008	ENST00000314340		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000344008	ENST00000452018		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000344008	ENST00000510878		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-intron	ENST00000478728	ENST00000376637		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-intron	ENST00000478728	ENST00000400895		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-3UTR	ENST00000478728	ENST00000491346		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-3UTR	ENST00000478728	ENST00000376629		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-3UTR	ENST00000478728	ENST00000376627		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-3UTR	ENST00000478728	ENST00000314340		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-3UTR	ENST00000478728	ENST00000452018		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
5UTR-3UTR	ENST00000478728	ENST00000510878		TCGA	RV	LGG	TCGA-DB-A64O-01A	CASZ1	chr1	10725140	-	AGTRAP	chr1	11805860	+
intron-3CDS	ENST00000395290	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395290	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395290	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395290	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000395290	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000358597	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000395292	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000310513	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000361904	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000539455	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000531165	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000532048	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-01A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000473706	ENST00000446425		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000473706	ENST00000404924		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000473706	ENST00000309033		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000473706	ENST00000535786		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-3UTR	ENST00000380834	ENST00000446425		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000380834	ENST00000404924		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000380834	ENST00000309033		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000380834	ENST00000535786		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-3UTR	ENST00000260662	ENST00000446425		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000260662	ENST00000404924		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000260662	ENST00000309033		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000260662	ENST00000535786		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-3UTR	ENST00000395845	ENST00000446425		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000395845	ENST00000404924		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000395845	ENST00000309033		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000395845	ENST00000535786		TCGA	RV	LGG	TCGA-E1-5318-01A	CENPO	chr2	25016834	+	UBXN2A	chr2	24181171	+
In-frame	ENST00000257287	ENST00000381227		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
In-frame	ENST00000257287	ENST00000431623		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
In-frame	ENST00000257287	ENST00000441246		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
In-frame	ENST00000257287	ENST00000314595		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
5CDS-intron	ENST00000257287	ENST00000510355		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
intron-3CDS	ENST00000422247	ENST00000381227		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
intron-3CDS	ENST00000422247	ENST00000431623		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
intron-3CDS	ENST00000422247	ENST00000441246		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
intron-3CDS	ENST00000422247	ENST00000314595		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
intron-intron	ENST00000422247	ENST00000510355		TCGA	RV	LGG	TCGA-S9-A89Z-01A	CEP135	chr4	56847545	+	POLR2B	chr4	57865783	+
In-frame	ENST00000529230	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000529230	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000529230	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000529230	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000529230	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
In-frame	ENST00000415402	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000415402	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000415402	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000415402	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000415402	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
In-frame	ENST00000312055	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000312055	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000312055	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000312055	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000312055	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
In-frame	ENST00000354558	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000354558	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000354558	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000354558	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000354558	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-3CDS	ENST00000532321	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-intron	ENST00000532321	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-intron	ENST00000532321	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-5UTR	ENST00000532321	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-5UTR	ENST00000532321	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-01A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-intron	ENST00000348956	ENST00000233057		TCGA	RV	LGG	TCGA-DU-6404-01A	CKB	chr14	103986004	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000348956	ENST00000395127		TCGA	RV	LGG	TCGA-DU-6404-01A	CKB	chr14	103986004	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000348956	ENST00000405334		TCGA	RV	LGG	TCGA-DU-6404-01A	CKB	chr14	103986004	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000402744	ENST00000409359		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
Frame-shit	ENST00000402744	ENST00000326016		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
Frame-shit	ENST00000402744	ENST00000392953		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000402744	ENST00000428230		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000402744	ENST00000525839		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000402744	ENST00000409303		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000402744	ENST00000355771		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000402744	ENST00000439368		TCGA	RV	LGG	TCGA-FG-7643-01A	CPE	chr4	166419472	+	ARHGEF4	chr2	131674224	+
Frame-shit	ENST00000537090	ENST00000264414		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000537090	ENST00000344951		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000537090	ENST00000409096		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000537090	ENST00000409777		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
5CDS-intron	ENST00000537090	ENST00000432260		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000321264	ENST00000264414		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000321264	ENST00000344951		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000321264	ENST00000409096		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000321264	ENST00000409777		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
5CDS-intron	ENST00000321264	ENST00000432260		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000403782	ENST00000264414		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000403782	ENST00000344951		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000403782	ENST00000409096		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000403782	ENST00000409777		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-intron	ENST00000403782	ENST00000432260		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000342518	ENST00000264414		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000342518	ENST00000344951		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000342518	ENST00000409096		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
Frame-shit	ENST00000342518	ENST00000409777		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
5CDS-intron	ENST00000342518	ENST00000432260		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000486953	ENST00000264414		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000486953	ENST00000344951		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000486953	ENST00000409096		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-3CDS	ENST00000486953	ENST00000409777		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
intron-intron	ENST00000486953	ENST00000432260		TCGA	RV	LGG	TCGA-S9-A6U6-01A	D2HGDH	chr2	242674931	+	CUL3	chr2	225376299	-
5CDS-5UTR	ENST00000264018	ENST00000520358		TCGA	RV	LGG	TCGA-HT-7686-01A	DDX6	chr11	118627880	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000264018	ENST00000340160		TCGA	RV	LGG	TCGA-HT-7686-01A	DDX6	chr11	118627880	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000534980	ENST00000520358		TCGA	RV	LGG	TCGA-HT-7686-01A	DDX6	chr11	118627880	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000534980	ENST00000340160		TCGA	RV	LGG	TCGA-HT-7686-01A	DDX6	chr11	118627880	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000526070	ENST00000520358		TCGA	RV	LGG	TCGA-HT-7686-01A	DDX6	chr11	118627880	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000526070	ENST00000340160		TCGA	RV	LGG	TCGA-HT-7686-01A	DDX6	chr11	118627880	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000306833	ENST00000447925		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000306833	ENST00000435379		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000306833	ENST00000266505		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000306833	ENST00000539875		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000306833	ENST00000534932		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000306833	ENST00000538330		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000306833	ENST00000541695		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000306833	ENST00000542762		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000389082	ENST00000447925		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000389082	ENST00000435379		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000389082	ENST00000266505		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000389082	ENST00000539875		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000389082	ENST00000534932		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000389082	ENST00000538330		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000389082	ENST00000541695		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000389082	ENST00000542762		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000536562	ENST00000447925		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000536562	ENST00000435379		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000536562	ENST00000266505		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536562	ENST00000539875		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536562	ENST00000534932		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536562	ENST00000538330		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536562	ENST00000541695		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000536562	ENST00000542762		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000354285	ENST00000447925		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000354285	ENST00000435379		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-5UTR	ENST00000354285	ENST00000266505		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000354285	ENST00000539875		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000354285	ENST00000534932		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000354285	ENST00000538330		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000354285	ENST00000541695		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5CDS-intron	ENST00000354285	ENST00000542762		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-5UTR	ENST00000545147	ENST00000447925		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-5UTR	ENST00000545147	ENST00000435379		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-5UTR	ENST00000545147	ENST00000266505		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-intron	ENST00000545147	ENST00000539875		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-intron	ENST00000545147	ENST00000534932		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-intron	ENST00000545147	ENST00000538330		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-intron	ENST00000545147	ENST00000541695		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-intron	ENST00000545147	ENST00000542762		TCGA	RV	LGG	TCGA-HT-7884-01B	DENND5B	chr12	31648744	-	PLCZ1	chr12	18890443	-
5UTR-3CDS	ENST00000264211	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000400422	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000602326	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000374935	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000374937	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000536266	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000374933	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000544689	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000356916	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000374927	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000537738	ENST00000415912		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000357071		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000374893		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000436918		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000264205		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000528294		TCGA	RV	LGG	TCGA-E1-5304-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
Frame-shit	ENST00000391945	ENST00000324616		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000391945	ENST00000405531		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000391945	ENST00000398716		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
Frame-shit	ENST00000391944	ENST00000324616		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000391944	ENST00000405531		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000391944	ENST00000398716		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
Frame-shit	ENST00000485403	ENST00000324616		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000485403	ENST00000405531		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000485403	ENST00000398716		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
Frame-shit	ENST00000391940	ENST00000324616		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000391940	ENST00000405531		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000391940	ENST00000398716		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
Frame-shit	ENST00000221481	ENST00000324616		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000221481	ENST00000405531		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000221481	ENST00000398716		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ERCC2	chr19	45872188	-	C12orf40	chr12	40110558	+
5CDS-5UTR	ENST00000221233	ENST00000396841		TCGA	RV	LGG	TCGA-DU-8166-01A	EXOSC5	chr19	41903086	-	LEUTX	chr19	40275167	+
5CDS-5UTR	ENST00000596905	ENST00000396841		TCGA	RV	LGG	TCGA-DU-8166-01A	EXOSC5	chr19	41903086	-	LEUTX	chr19	40275167	+
5UTR-3CDS	ENST00000289081	ENST00000372159		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
5UTR-3CDS	ENST00000289081	ENST00000372153		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
5UTR-3CDS	ENST00000289081	ENST00000438527		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
5UTR-3CDS	ENST00000289081	ENST00000310532		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
5UTR-5UTR	ENST00000289081	ENST00000480876		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
5UTR-5UTR	ENST00000289081	ENST00000544003		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000375305	ENST00000372159		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000375305	ENST00000372153		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000375305	ENST00000438527		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000375305	ENST00000310532		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-5UTR	ENST00000375305	ENST00000480876		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-5UTR	ENST00000375305	ENST00000544003		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000464653	ENST00000372159		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000464653	ENST00000372153		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000464653	ENST00000438527		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-3CDS	ENST00000464653	ENST00000310532		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-5UTR	ENST00000464653	ENST00000480876		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
intron-5UTR	ENST00000464653	ENST00000544003		TCGA	RV	LGG	TCGA-HT-7483-01A	FANCC	chr9	98079808	-	DDX31	chr9	135538082	-
Frame-shit	ENST00000445105	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000445105	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000445105	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
Frame-shit	ENST00000264730	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000264730	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000264730	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-3CDS	ENST00000454309	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-5UTR	ENST00000454309	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-intron	ENST00000454309	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
In-frame	ENST00000450716	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000450716	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000450716	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
Frame-shit	ENST00000430714	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000430714	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000430714	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-3CDS	ENST00000466144	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-5UTR	ENST00000466144	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-intron	ENST00000466144	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-01A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-5UTR	ENST00000315843	ENST00000528282		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000530481		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000445890		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000337057		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000315843	ENST00000530757		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000392427		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000368128		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000527411		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000315843	ENST00000524581		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000525271		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000315843	ENST00000525193		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000315843	ENST00000527659		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000315843	ENST00000529208		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000315843	ENST00000531410		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000315843	ENST00000530148		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000528282		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000530481		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000445890		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000337057		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-intron	ENST00000464295	ENST00000530757		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000392427		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000368128		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000527411		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-intron	ENST00000464295	ENST00000524581		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000525271		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-intron	ENST00000464295	ENST00000525193		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-intron	ENST00000464295	ENST00000527659		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-5UTR	ENST00000464295	ENST00000529208		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-intron	ENST00000464295	ENST00000531410		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
5UTR-intron	ENST00000464295	ENST00000530148		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000528282		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000530481		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000445890		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000337057		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000461057	ENST00000530757		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000392427		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000368128		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000527411		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000461057	ENST00000524581		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000525271		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000461057	ENST00000525193		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000461057	ENST00000527659		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-5UTR	ENST00000461057	ENST00000529208		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000461057	ENST00000531410		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
intron-intron	ENST00000461057	ENST00000530148		TCGA	RV	LGG	TCGA-DU-6402-01A	GPR156	chr3	120003876	-	EPB41L2	chr6	131277639	-
In-frame	ENST00000413795	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000413795	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000413795	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000413795	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000413795	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000413795	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000413795	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000369138	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000369138	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000369138	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369138	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369138	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369138	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369138	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000421544	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000421544	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000421544	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000421544	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000421544	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000421544	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000421544	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000358361	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000358361	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000358361	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000358361	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000358361	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000358361	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000358361	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000318991	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000318991	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000318991	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000318991	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000318991	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000318991	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000318991	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000369137	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000369137	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
In-frame	ENST00000369137	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369137	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369137	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369137	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
5CDS-intron	ENST00000369137	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-3CDS	ENST00000369134	ENST00000503581		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-3CDS	ENST00000369134	ENST00000370621		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-3CDS	ENST00000369134	ENST00000370616		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-intron	ENST00000369134	ENST00000393380		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-intron	ENST00000369134	ENST00000342421		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-intron	ENST00000369134	ENST00000370618		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
intron-intron	ENST00000369134	ENST00000486069		TCGA	RV	LGG	TCGA-TM-A7CF-01A	GRIK2	chr6	101847268	+	EYS	chr6	65767620	-
Frame-shit	ENST00000229330	ENST00000547776		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000229330	ENST00000329257		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000229330	ENST00000547010		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000341752		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000549558		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000550693		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000549025		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000549493		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000547446		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000333732		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000546568		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000332712		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000229330	ENST00000546960		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-5UTR	ENST00000229330	ENST00000550833		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-3CDS	ENST00000550335	ENST00000547776		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-3CDS	ENST00000550335	ENST00000329257		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-3CDS	ENST00000550335	ENST00000547010		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000341752		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000549558		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000550693		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000549025		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000549493		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000547446		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000333732		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000546568		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000332712		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-intron	ENST00000550335	ENST00000546960		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
3UTR-5UTR	ENST00000550335	ENST00000550833		TCGA	RV	LGG	TCGA-HT-7611-01A	HCFC2	chr12	104492258	+	ANKS1B	chr12	99640642	-
5CDS-5UTR	ENST00000337014	ENST00000342572		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000306645		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000437807		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000336995		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000434650		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000583617		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000577436		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000585064		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000577732		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000578919		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000585080		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000578913		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000337014	ENST00000583359		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000342572		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000306645		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000437807		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000336995		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000434650		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000583617		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000577436		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000585064		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000577732		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000578919		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000585080		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000578913		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000577944	ENST00000583359		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000342572		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000306645		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000437807		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000336995		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000434650		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000583617		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000577436		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000585064		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000577732		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000578919		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000585080		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000578913		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
5CDS-5UTR	ENST00000327949	ENST00000583359		TCGA	RV	LGG	TCGA-IK-7675-01A	HEXDC	chr17	80399765	+	C17orf62	chr17	80403836	-
In-frame	ENST00000334082	ENST00000372009		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000334082	ENST00000361297		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
5CDS-intron	ENST00000334082	ENST00000477968		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000535690	ENST00000372009		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000535690	ENST00000361297		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
5CDS-intron	ENST00000535690	ENST00000477968		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000508576	ENST00000372009		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000508576	ENST00000361297		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
5CDS-intron	ENST00000508576	ENST00000477968		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000282260	ENST00000372009		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
In-frame	ENST00000282260	ENST00000361297		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
5CDS-intron	ENST00000282260	ENST00000477968		TCGA	RV	LGG	TCGA-HT-7882-01A	HOMER1	chr5	78808593	-	MAST2	chr1	46348036	+
intron-3CDS	ENST00000396352	ENST00000297063		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-3CDS	ENST00000396352	ENST00000338533		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-3CDS	ENST00000396352	ENST00000317020		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-3CDS	ENST00000396352	ENST00000440378		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-5UTR	ENST00000396352	ENST00000436884		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-intron	ENST00000396352	ENST00000453212		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-intron	ENST00000396352	ENST00000480192		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
intron-intron	ENST00000396352	ENST00000415803		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000317201	ENST00000297063		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000317201	ENST00000338533		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000317201	ENST00000317020		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000317201	ENST00000440378		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-5UTR	ENST00000317201	ENST00000436884		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-intron	ENST00000317201	ENST00000453212		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-intron	ENST00000317201	ENST00000480192		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-intron	ENST00000317201	ENST00000415803		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000521401	ENST00000297063		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000521401	ENST00000338533		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000521401	ENST00000317020		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-3CDS	ENST00000521401	ENST00000440378		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-5UTR	ENST00000521401	ENST00000436884		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-intron	ENST00000521401	ENST00000453212		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-intron	ENST00000521401	ENST00000480192		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5UTR-intron	ENST00000521401	ENST00000415803		TCGA	RV	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27162178	-	KIAA0895	chr7	36397199	-
5CDS-5UTR	ENST00000375650	ENST00000265113		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000375650	ENST00000506725		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000375650	ENST00000381918		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000545241	ENST00000265113		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000545241	ENST00000506725		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000545241	ENST00000381918		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000450744	ENST00000265113		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000450744	ENST00000506725		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000450744	ENST00000381918		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000391548	ENST00000265113		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000391548	ENST00000506725		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000391548	ENST00000381918		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000445736	ENST00000265113		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000445736	ENST00000506725		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000445736	ENST00000381918		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000391555	ENST00000265113		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000391555	ENST00000506725		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
intron-intron	ENST00000391555	ENST00000381918		TCGA	RV	LGG	TCGA-FG-8191-01A	HSPA1B	chr6	31798031	+	SLC1A3	chr5	36606541	+
5CDS-3UTR	ENST00000282146	ENST00000393452		TCGA	RV	LGG	TCGA-DH-A66D-01A	KCNK13	chr14	90528883	+	TDP1	chr14	90509414	+
5CDS-3UTR	ENST00000282146	ENST00000393454		TCGA	RV	LGG	TCGA-DH-A66D-01A	KCNK13	chr14	90528883	+	TDP1	chr14	90509414	+
5CDS-3UTR	ENST00000282146	ENST00000335725		TCGA	RV	LGG	TCGA-DH-A66D-01A	KCNK13	chr14	90528883	+	TDP1	chr14	90509414	+
5CDS-intron	ENST00000282146	ENST00000555565		TCGA	RV	LGG	TCGA-DH-A66D-01A	KCNK13	chr14	90528883	+	TDP1	chr14	90509414	+
5CDS-intron	ENST00000282146	ENST00000357382		TCGA	RV	LGG	TCGA-DH-A66D-01A	KCNK13	chr14	90528883	+	TDP1	chr14	90509414	+
5CDS-intron	ENST00000282146	ENST00000555880		TCGA	RV	LGG	TCGA-DH-A66D-01A	KCNK13	chr14	90528883	+	TDP1	chr14	90509414	+
In-frame	ENST00000159111	ENST00000361757		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000159111	ENST00000587024		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000159111	ENST00000438103		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000381759	ENST00000361757		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000381759	ENST00000587024		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000381759	ENST00000438103		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000536461	ENST00000361757		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000536461	ENST00000587024		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
In-frame	ENST00000536461	ENST00000438103		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000592175	ENST00000361757		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000592175	ENST00000587024		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000592175	ENST00000438103		TCGA	RV	LGG	TCGA-WY-A85E-01A	KDM4B	chr19	5082515	+	SBNO2	chr19	1127764	-
5UTR-5UTR	ENST00000376462	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
5UTR-5UTR	ENST00000376462	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
5UTR-3UTR	ENST00000376462	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
5UTR-3UTR	ENST00000376462	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
3UTR-5UTR	ENST00000481700	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
3UTR-5UTR	ENST00000481700	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
3UTR-3UTR	ENST00000481700	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
3UTR-3UTR	ENST00000481700	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000458595	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000458595	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000458595	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000458595	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000376454	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000376454	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000376454	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000376454	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000376452	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000376452	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000376452	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000376452	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000430453	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000430453	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000430453	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000430453	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000307544	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000307544	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000307544	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000307544	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000396446	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000396446	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000396446	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000396446	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000396445	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000396445	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000396445	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000396445	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000376451	ENST00000397269		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-5UTR	ENST00000376451	ENST00000362091		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000376451	ENST00000470089		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
intron-3UTR	ENST00000376451	ENST00000379999		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	KIAA1217	chr10	23984163	+	FBXO18	chr10	5948000	+
Frame-shit	ENST00000332129	ENST00000367412		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
5CDS-intron	ENST00000332129	ENST00000490002		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
Frame-shit	ENST00000360529	ENST00000367412		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
5CDS-intron	ENST00000360529	ENST00000490002		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
Frame-shit	ENST00000461742	ENST00000367412		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
5CDS-intron	ENST00000461742	ENST00000490002		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
Frame-shit	ENST00000422435	ENST00000367412		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
5CDS-intron	ENST00000422435	ENST00000490002		TCGA	RV	LGG	TCGA-DU-6542-01A	KIF21B	chr1	200992471	-	F13B	chr1	197032187	-
In-frame	ENST00000319332	ENST00000264731		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000382063		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000418709		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000320472		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000392460		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000440651		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000354600		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000437221		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000392463		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000392461		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000456148		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
5CDS-intron	ENST00000319332	ENST00000449992		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-3CDS	ENST00000427335	ENST00000264731		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000382063		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000418709		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000320472		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000392460		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000440651		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000354600		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000437221		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000392463		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000392461		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000456148		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
intron-intron	ENST00000427335	ENST00000449992		TCGA	RV	LGG	TCGA-CS-4942-01A	LEPREL1	chr3	189838041	-	TP63	chr3	189526061	+
Frame-shit	ENST00000221797	ENST00000263434		TCGA	RV	LGG	TCGA-TM-A84B-01A	LGALS13	chr19	40096028	+	PTPRH	chr19	55699536	-
Frame-shit	ENST00000221797	ENST00000376350		TCGA	RV	LGG	TCGA-TM-A84B-01A	LGALS13	chr19	40096028	+	PTPRH	chr19	55699536	-
5CDS-intron	ENST00000221797	ENST00000588559		TCGA	RV	LGG	TCGA-TM-A84B-01A	LGALS13	chr19	40096028	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000380345	ENST00000261798		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-3CDS	ENST00000380345	ENST00000377843		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-5UTR	ENST00000380345	ENST00000515435		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-5UTR	ENST00000380345	ENST00000504676		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-5UTR	ENST00000380345	ENST00000515768		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-intron	ENST00000380345	ENST00000606719		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-intron	ENST00000380345	ENST00000606299		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5UTR-intron	ENST00000380345	ENST00000515748		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-3CDS	ENST00000515007	ENST00000261798		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-3CDS	ENST00000515007	ENST00000377843		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-5UTR	ENST00000515007	ENST00000515435		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-5UTR	ENST00000515007	ENST00000504676		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-5UTR	ENST00000515007	ENST00000515768		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-intron	ENST00000515007	ENST00000606719		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-intron	ENST00000515007	ENST00000606299		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-intron	ENST00000515007	ENST00000515748		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-3CDS	ENST00000515349	ENST00000261798		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-3CDS	ENST00000515349	ENST00000377843		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-5UTR	ENST00000515349	ENST00000515435		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-5UTR	ENST00000515349	ENST00000504676		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-5UTR	ENST00000515349	ENST00000515768		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-intron	ENST00000515349	ENST00000606719		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-intron	ENST00000515349	ENST00000606299		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
intron-intron	ENST00000515349	ENST00000515748		TCGA	RV	LGG	TCGA-HT-A614-01A	LHFPL2	chr5	77860636	-	CSNK1A1	chr5	148904734	-
5CDS-5UTR	ENST00000294304	ENST00000301765		TCGA	RV	LGG	TCGA-HT-7686-01A	LRP5	chr11	68115711	+	VPS37C	chr11	60906307	-
intron-5UTR	ENST00000529481	ENST00000301765		TCGA	RV	LGG	TCGA-HT-7686-01A	LRP5	chr11	68115711	+	VPS37C	chr11	60906307	-
In-frame	ENST00000369393	ENST00000369681		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
In-frame	ENST00000369393	ENST00000369679		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
5CDS-intron	ENST00000369393	ENST00000479164		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
In-frame	ENST00000428876	ENST00000369681		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
In-frame	ENST00000428876	ENST00000369679		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
5CDS-intron	ENST00000428876	ENST00000479164		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
intron-3CDS	ENST00000468568	ENST00000369681		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
intron-3CDS	ENST00000468568	ENST00000369679		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
intron-intron	ENST00000468568	ENST00000479164		TCGA	RV	LGG	TCGA-E1-5304-01A	MDN1	chr6	90482292	-	CYB5R4	chr6	84603241	+
Frame-shit	ENST00000380338	ENST00000374531		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000380338	ENST00000448454		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000380338	ENST00000483909		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000380338	ENST00000314527		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000355930	ENST00000374531		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000355930	ENST00000448454		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000355930	ENST00000483909		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000355930	ENST00000314527		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000429426	ENST00000374531		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000429426	ENST00000448454		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000429426	ENST00000483909		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
Frame-shit	ENST00000429426	ENST00000314527		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000475957	ENST00000374531		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000475957	ENST00000448454		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000475957	ENST00000483909		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000475957	ENST00000314527		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
intron-3CDS	ENST00000380321	ENST00000374531		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
intron-3CDS	ENST00000380321	ENST00000448454		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
intron-3CDS	ENST00000380321	ENST00000483909		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
intron-3CDS	ENST00000380321	ENST00000314527		TCGA	RV	LGG	TCGA-FG-A87N-01A	MLLT3	chr9	20620653	-	PALM2	chr9	112629771	+
5CDS-5UTR	ENST00000319217	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000319217	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000319217	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000319217	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000319217	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000541718	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000541718	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000541718	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000541718	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000541718	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000381022	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381022	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381022	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381022	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381022	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000541093	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000541093	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000541093	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000541093	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000541093	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000538841	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000538841	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000538841	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000538841	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000538841	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000536827	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000536827	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000536827	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000536827	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000536827	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000447879	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000447879	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000447879	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000447879	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000447879	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000381015	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381015	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381015	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381015	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000381015	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000546205	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000546205	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000546205	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000546205	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000546205	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000540202	ENST00000494753		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000540202	ENST00000411567		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000540202	ENST00000276914		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000540202	ENST00000380465		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000540202	ENST00000380464		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	MPDZ	chr9	13188783	-	PLIN2	chr9	19131269	-
Frame-shit	ENST00000265081	ENST00000361132		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
Frame-shit	ENST00000265081	ENST00000393371		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
5CDS-5UTR	ENST00000265081	ENST00000522500		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
5CDS-5UTR	ENST00000265081	ENST00000519883		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
intron-3CDS	ENST00000512258	ENST00000361132		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
intron-3CDS	ENST00000512258	ENST00000393371		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
intron-5UTR	ENST00000512258	ENST00000522500		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
intron-5UTR	ENST00000512258	ENST00000519883		TCGA	RV	LGG	TCGA-HT-A614-01A	MSH3	chr5	79952350	+	RASGEF1C	chr5	179555610	-
In-frame	ENST00000407008	ENST00000341056		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
5CDS-intron	ENST00000407008	ENST00000396045		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
5CDS-intron	ENST00000407008	ENST00000310758		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
5CDS-intron	ENST00000407008	ENST00000396040		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
5CDS-intron	ENST00000407008	ENST00000442504		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
5CDS-intron	ENST00000407008	ENST00000448602		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
5CDS-intron	ENST00000407008	ENST00000479447		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000583517	ENST00000341056		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000583517	ENST00000396045		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000583517	ENST00000310758		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000583517	ENST00000396040		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000583517	ENST00000442504		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000583517	ENST00000448602		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000583517	ENST00000479447		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000582037	ENST00000341056		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000582037	ENST00000396045		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000582037	ENST00000310758		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000582037	ENST00000396040		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000582037	ENST00000442504		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000582037	ENST00000448602		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000582037	ENST00000479447		TCGA	RV	LGG	TCGA-FG-A70Z-01A	NLK	chr17	26449758	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000376214	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000376214	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000376214	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000376213	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000376213	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000376213	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000395882	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000395882	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
5CDS-intron	ENST00000395882	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000304053	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000304053	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000304053	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000376208	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000376208	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000376208	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000277120	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000277120	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000277120	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000323115	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000323115	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000323115	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000359847	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000359847	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
5CDS-intron	ENST00000359847	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000395866	ENST00000226299		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000395866	ENST00000606142		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-intron	ENST00000395866	ENST00000503467		TCGA	RV	LGG	TCGA-DB-5278-01A	NTRK2	chr9	87430621	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000331483	ENST00000426016		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000331483	ENST00000402219		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000331483	ENST00000395038		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000331483	ENST00000428721		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000331483	ENST00000472480		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000576390	ENST00000426016		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000576390	ENST00000402219		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000576390	ENST00000395038		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000576390	ENST00000428721		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000576390	ENST00000472480		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000439918	ENST00000426016		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000439918	ENST00000402219		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000439918	ENST00000395038		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000439918	ENST00000428721		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000439918	ENST00000472480		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000472244	ENST00000426016		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000472244	ENST00000402219		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-3CDS	ENST00000472244	ENST00000395038		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000472244	ENST00000428721		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
intron-intron	ENST00000472244	ENST00000472480		TCGA	RV	LGG	TCGA-E1-5318-01A	P4HB	chr17	79801042	-	SOS1	chr2	39222528	-
Frame-shit	ENST00000437198	ENST00000438167		TCGA	RV	LGG	TCGA-S9-A6TS-01A	PARN	chr16	14645878	-	PLA2G10	chr16	14766606	-
Frame-shit	ENST00000420015	ENST00000438167		TCGA	RV	LGG	TCGA-S9-A6TS-01A	PARN	chr16	14645878	-	PLA2G10	chr16	14766606	-
Frame-shit	ENST00000341484	ENST00000438167		TCGA	RV	LGG	TCGA-S9-A6TS-01A	PARN	chr16	14645878	-	PLA2G10	chr16	14766606	-
Frame-shit	ENST00000539279	ENST00000438167		TCGA	RV	LGG	TCGA-S9-A6TS-01A	PARN	chr16	14645878	-	PLA2G10	chr16	14766606	-
intron-3CDS	ENST00000566021	ENST00000438167		TCGA	RV	LGG	TCGA-S9-A6TS-01A	PARN	chr16	14645878	-	PLA2G10	chr16	14766606	-
5CDS-3UTR	ENST00000400316	ENST00000485925		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000400316	ENST00000371916		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000400316	ENST00000371929		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000400316	ENST00000355699		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000400316	ENST00000356589		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-intron	ENST00000400316	ENST00000536611		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-intron	ENST00000400316	ENST00000371911		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-intron	ENST00000400316	ENST00000371910		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000262719	ENST00000485925		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000262719	ENST00000371916		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000262719	ENST00000371929		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000262719	ENST00000355699		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-3UTR	ENST00000262719	ENST00000356589		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-intron	ENST00000262719	ENST00000536611		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-intron	ENST00000262719	ENST00000371911		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
5CDS-intron	ENST00000262719	ENST00000371910		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-3UTR	ENST00000588953	ENST00000485925		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-3UTR	ENST00000588953	ENST00000371916		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-3UTR	ENST00000588953	ENST00000371929		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-3UTR	ENST00000588953	ENST00000355699		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-3UTR	ENST00000588953	ENST00000356589		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-intron	ENST00000588953	ENST00000536611		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-intron	ENST00000588953	ENST00000371911		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
intron-intron	ENST00000588953	ENST00000371910		TCGA	RV	LGG	TCGA-S9-A7J0-01A	PHLPP1	chr18	60384492	+	ADAMTS13	chr9	136288221	+
In-frame	ENST00000335312	ENST00000541714		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000335312	ENST00000539908		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000335312	ENST00000382008		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000335312	ENST00000589378		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000335312	ENST00000262968		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000335312	ENST00000587686		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-intron	ENST00000335312	ENST00000587641		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
In-frame	ENST00000539785	ENST00000541714		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000539785	ENST00000539908		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000539785	ENST00000382008		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000539785	ENST00000589378		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000539785	ENST00000262968		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000539785	ENST00000587686		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-intron	ENST00000539785	ENST00000587641		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
In-frame	ENST00000589578	ENST00000541714		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000589578	ENST00000539908		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000589578	ENST00000382008		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000589578	ENST00000589378		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000589578	ENST00000262968		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000589578	ENST00000587686		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-intron	ENST00000589578	ENST00000587641		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
In-frame	ENST00000537021	ENST00000541714		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000537021	ENST00000539908		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000537021	ENST00000382008		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000537021	ENST00000589378		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000537021	ENST00000262968		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-5UTR	ENST00000537021	ENST00000587686		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5CDS-intron	ENST00000537021	ENST00000587641		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-3CDS	ENST00000587482	ENST00000541714		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-5UTR	ENST00000587482	ENST00000539908		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-5UTR	ENST00000587482	ENST00000382008		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-5UTR	ENST00000587482	ENST00000589378		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-5UTR	ENST00000587482	ENST00000262968		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-5UTR	ENST00000587482	ENST00000587686		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
5UTR-intron	ENST00000587482	ENST00000587641		TCGA	RV	LGG	TCGA-HT-A61B-01A	PIP5K1C	chr19	3700295	-	TJP3	chr19	3728602	+
Frame-shit	ENST00000272203	ENST00000341516		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000272203	ENST00000554215		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000272203	ENST00000556847		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000272203	ENST00000557386		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
5CDS-intron	ENST00000272203	ENST00000389997		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
5CDS-5UTR	ENST00000272203	ENST00000553293		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000414478	ENST00000341516		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000414478	ENST00000554215		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000414478	ENST00000556847		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
Frame-shit	ENST00000414478	ENST00000557386		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
5CDS-intron	ENST00000414478	ENST00000389997		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
5CDS-5UTR	ENST00000414478	ENST00000553293		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
intron-3CDS	ENST00000485632	ENST00000341516		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
intron-3CDS	ENST00000485632	ENST00000554215		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
intron-3CDS	ENST00000485632	ENST00000556847		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
intron-3CDS	ENST00000485632	ENST00000557386		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
intron-intron	ENST00000485632	ENST00000389997		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
intron-5UTR	ENST00000485632	ENST00000553293		TCGA	RV	LGG	TCGA-DU-6403-01A	PLEKHA6	chr1	204234070	-	DCAF5	chr14	69542128	-
In-frame	ENST00000381227	ENST00000257287		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
5CDS-intron	ENST00000381227	ENST00000422247		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
In-frame	ENST00000431623	ENST00000257287		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
5CDS-intron	ENST00000431623	ENST00000422247		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
In-frame	ENST00000441246	ENST00000257287		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
5CDS-intron	ENST00000441246	ENST00000422247		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
In-frame	ENST00000314595	ENST00000257287		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
5CDS-intron	ENST00000314595	ENST00000422247		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
intron-3CDS	ENST00000510355	ENST00000257287		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
intron-intron	ENST00000510355	ENST00000422247		TCGA	RV	LGG	TCGA-S9-A89Z-01A	POLR2B	chr4	57861575	+	CEP135	chr4	56851447	+
5CDS-5UTR	ENST00000011619	ENST00000244769		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
5CDS-5UTR	ENST00000011619	ENST00000436367		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
5CDS-intron	ENST00000011619	ENST00000467008		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
intron-5UTR	ENST00000469916	ENST00000244769		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
intron-5UTR	ENST00000469916	ENST00000436367		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
intron-intron	ENST00000469916	ENST00000467008		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
intron-5UTR	ENST00000539980	ENST00000244769		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
intron-5UTR	ENST00000539980	ENST00000436367		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
intron-intron	ENST00000539980	ENST00000467008		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	ATXN1	chr6	16328701	-
Frame-shit	ENST00000529163	ENST00000465357		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000529163	ENST00000539517		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000529163	ENST00000267422		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000529163	ENST00000344429		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000529163	ENST00000547619		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000529163	ENST00000574031		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000529163	ENST00000551754		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
In-frame	ENST00000394920	ENST00000465357		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000394920	ENST00000539517		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000394920	ENST00000267422		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000394920	ENST00000344429		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000394920	ENST00000547619		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000394920	ENST00000574031		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000394920	ENST00000551754		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
Frame-shit	ENST00000527914	ENST00000465357		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000527914	ENST00000539517		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000527914	ENST00000267422		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000527914	ENST00000344429		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000527914	ENST00000547619		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000527914	ENST00000574031		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000527914	ENST00000551754		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
Frame-shit	ENST00000262584	ENST00000465357		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000262584	ENST00000539517		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000262584	ENST00000267422		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000262584	ENST00000344429		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000262584	ENST00000547619		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000262584	ENST00000574031		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-intron	ENST00000262584	ENST00000551754		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-3CDS	ENST00000528957	ENST00000465357		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-5UTR	ENST00000528957	ENST00000539517		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-intron	ENST00000528957	ENST00000267422		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-intron	ENST00000528957	ENST00000344429		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-5UTR	ENST00000528957	ENST00000547619		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-intron	ENST00000528957	ENST00000574031		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
intron-intron	ENST00000528957	ENST00000551754		TCGA	RV	LGG	TCGA-CS-5393-01A	RPL8	chr8	146015155	-	NOVA1	chr14	27066692	-
5CDS-5UTR	ENST00000361757	ENST00000284000		TCGA	RV	LGG	TCGA-WY-A85E-01A	SBNO2	chr19	1147308	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000361757	ENST00000585933		TCGA	RV	LGG	TCGA-WY-A85E-01A	SBNO2	chr19	1147308	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000587024	ENST00000284000		TCGA	RV	LGG	TCGA-WY-A85E-01A	SBNO2	chr19	1147308	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000587024	ENST00000585933		TCGA	RV	LGG	TCGA-WY-A85E-01A	SBNO2	chr19	1147308	-	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000438103	ENST00000284000		TCGA	RV	LGG	TCGA-WY-A85E-01A	SBNO2	chr19	1147308	-	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000438103	ENST00000585933		TCGA	RV	LGG	TCGA-WY-A85E-01A	SBNO2	chr19	1147308	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000339570	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-intron	ENST00000339570	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-intron	ENST00000339570	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-5UTR	ENST00000415380	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000415380	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000415380	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-5UTR	ENST00000261693	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-intron	ENST00000261693	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-intron	ENST00000261693	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-5UTR	ENST00000376788	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-intron	ENST00000376788	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5CDS-intron	ENST00000376788	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-5UTR	ENST00000546215	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000546215	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000546215	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5UTR-5UTR	ENST00000535005	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5UTR-intron	ENST00000535005	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
5UTR-intron	ENST00000535005	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-5UTR	ENST00000541205	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000541205	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000541205	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-5UTR	ENST00000540495	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000540495	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000540495	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-5UTR	ENST00000544327	ENST00000536002		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000544327	ENST00000261655		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
intron-intron	ENST00000544327	ENST00000535703		TCGA	RV	LGG	TCGA-WY-A85A-01A	SCARB1	chr12	125270903	-	RIMBP2	chr12	131002462	-
In-frame	ENST00000356260	ENST00000358105		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
In-frame	ENST00000356260	ENST00000508675		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
5CDS-intron	ENST00000356260	ENST00000512931		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
In-frame	ENST00000395711	ENST00000358105		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
In-frame	ENST00000395711	ENST00000508675		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
5CDS-intron	ENST00000395711	ENST00000512931		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
intron-3CDS	ENST00000513089	ENST00000358105		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
intron-3CDS	ENST00000513089	ENST00000508675		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
intron-intron	ENST00000513089	ENST00000512931		TCGA	RV	LGG	TCGA-DU-A7TA-01A	SDAD1	chr4	76902525	-	C4orf22	chr4	81791147	+
5CDS-5UTR	ENST00000336798	ENST00000265113		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000336798	ENST00000506725		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000336798	ENST00000381918		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000339394	ENST00000265113		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
intron-intron	ENST00000339394	ENST00000506725		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
intron-intron	ENST00000339394	ENST00000381918		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000471567	ENST00000265113		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
intron-intron	ENST00000471567	ENST00000506725		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
intron-intron	ENST00000471567	ENST00000381918		TCGA	RV	LGG	TCGA-CS-5395-01A	SDC3	chr1	31342314	-	SLC1A3	chr5	36606541	+
In-frame	ENST00000435667	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000435667	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
In-frame	ENST00000440156	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000440156	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000455077	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000455077	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000437179	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000437179	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
5UTR-3CDS	ENST00000388777	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
5UTR-3UTR	ENST00000388777	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
In-frame	ENST00000454389	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000454389	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000446700	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000446700	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000425128	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000425128	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
In-frame	ENST00000445684	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000445684	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000428386	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000428386	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000295736	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000295736	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-01A	SLC4A7	chr3	27525558	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000435667	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000435667	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000440156	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000440156	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
In-frame	ENST00000455077	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000455077	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
In-frame	ENST00000437179	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000437179	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000388777	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000388777	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000454389	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000454389	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
In-frame	ENST00000446700	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000446700	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
In-frame	ENST00000425128	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
5CDS-3UTR	ENST00000425128	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000445684	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000445684	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000428386	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000428386	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3CDS	ENST00000295736	ENST00000263321		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
intron-3UTR	ENST00000295736	ENST00000526139		TCGA	RV	LGG	TCGA-FG-5963-02A	SLC4A7	chr3	27525570	-	TYR	chr11	88924370	+
In-frame	ENST00000361368	ENST00000355947		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361368	ENST00000349062		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361368	ENST00000354241		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361125	ENST00000355947		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361125	ENST00000349062		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361125	ENST00000354241		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
intron-3CDS	ENST00000480055	ENST00000355947		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
intron-3CDS	ENST00000480055	ENST00000349062		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
intron-3CDS	ENST00000480055	ENST00000354241		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
Frame-shit	ENST00000374232	ENST00000374431		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
In-frame	ENST00000374232	ENST00000541779		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000374232	ENST00000374430		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
Frame-shit	ENST00000374232	ENST00000358883		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
In-frame	ENST00000374232	ENST00000538760		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000604751	ENST00000374431		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000604751	ENST00000541779		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000604751	ENST00000374430		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000604751	ENST00000358883		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
intron-3CDS	ENST00000604751	ENST00000538760		TCGA	RV	LGG	TCGA-DU-5853-01A	SNX30	chr9	115513437	+	LPAR1	chr9	113638002	-
intron-5UTR	ENST00000393446	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393446	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393446	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393446	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393446	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000265437	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000265437	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000265437	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000265437	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000265437	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393451	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393451	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393451	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393451	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393451	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393449	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393449	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393449	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393449	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000393449	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000323984	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000323984	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000323984	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000323984	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000323984	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000432298	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000432298	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000422922	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-5UTR	ENST00000422922	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
3UTR-5UTR	ENST00000487459	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
3UTR-5UTR	ENST00000487459	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
3UTR-intron	ENST00000487459	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
3UTR-intron	ENST00000487459	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
3UTR-intron	ENST00000487459	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5UTR-5UTR	ENST00000393443	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5UTR-5UTR	ENST00000393443	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5UTR-intron	ENST00000393443	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5UTR-intron	ENST00000393443	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5UTR-intron	ENST00000393443	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393447	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393447	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393447	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393447	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393447	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393444	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393444	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393444	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393444	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393444	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000465133	ENST00000397752		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000465133	ENST00000318493		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000465133	ENST00000436117		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000465133	ENST00000495962		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
5CDS-intron	ENST00000465133	ENST00000539704		TCGA	RV	LGG	TCGA-HT-A5R7-01A	ST7	chr7	116660683	+	MET	chr7	116339125	+
Frame-shit	ENST00000300737	ENST00000332826		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	STIM1	chr11	4045217	+	ANO9	chr11	434098	-
Frame-shit	ENST00000527651	ENST00000332826		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	STIM1	chr11	4045217	+	ANO9	chr11	434098	-
3UTR-3CDS	ENST00000527484	ENST00000332826		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	STIM1	chr11	4045217	+	ANO9	chr11	434098	-
intron-3CDS	ENST00000533977	ENST00000332826		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	STIM1	chr11	4045217	+	ANO9	chr11	434098	-
In-frame	ENST00000405510	ENST00000216044		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000405510	ENST00000460605		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000216064	ENST00000216044		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000216064	ENST00000460605		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000405018	ENST00000216044		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000405018	ENST00000460605		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
Frame-shit	ENST00000406622	ENST00000216044		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000406622	ENST00000460605		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
In-frame	ENST00000411587	ENST00000216044		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
5CDS-intron	ENST00000411587	ENST00000460605		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	SUN2	chr22	39146230	-	GTPBP1	chr22	39111912	+
5UTR-5UTR	ENST00000598155	ENST00000339841		TCGA	RV	LGG	TCGA-DU-8166-01A	SYMPK	chr19	46321217	-	ELSPBP1	chr19	48511908	+
5UTR-5UTR	ENST00000598155	ENST00000597519		TCGA	RV	LGG	TCGA-DU-8166-01A	SYMPK	chr19	46321217	-	ELSPBP1	chr19	48511908	+
5CDS-5UTR	ENST00000245934	ENST00000339841		TCGA	RV	LGG	TCGA-DU-8166-01A	SYMPK	chr19	46321217	-	ELSPBP1	chr19	48511908	+
5CDS-5UTR	ENST00000245934	ENST00000597519		TCGA	RV	LGG	TCGA-DU-8166-01A	SYMPK	chr19	46321217	-	ELSPBP1	chr19	48511908	+
Frame-shit	ENST00000424789	ENST00000335464		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000424789	ENST00000417024		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000424789	ENST00000582773		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000424789	ENST00000582330		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000424789	ENST00000584171		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
Frame-shit	ENST00000389520	ENST00000335464		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000389520	ENST00000417024		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000389520	ENST00000582773		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000389520	ENST00000582330		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
5CDS-intron	ENST00000389520	ENST00000584171		TCGA	RV	LGG	TCGA-FG-A87Q-01A	TANC2	chr17	61151375	+	TMEM104	chr17	72781621	+
Frame-shit	ENST00000452392	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000452392	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
Frame-shit	ENST00000374899	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374899	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
Frame-shit	ENST00000374897	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
5CDS-intron	ENST00000374897	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000485701	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000485701	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000439425	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000439425	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000455842	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000455842	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000490587	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490587	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000414145	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000414145	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000443713	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000443713	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000463174	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000463174	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000451907	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000451907	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000452371	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000452371	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000468636	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000468636	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000445986	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000445986	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000419142	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000419142	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000460458	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000460458	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000383240	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383240	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000383239	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383239	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000469427	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000469427	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000383119	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383119	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000383118	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000383118	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000474736	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000474736	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000426977	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000426977	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000457634	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000457634	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-3CDS	ENST00000490573	ENST00000375663		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000482996		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000444930		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000435657		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000487524		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000457796		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000469542		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000211402		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000462946		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000422694		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000491232		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000424974		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000425144		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
intron-intron	ENST00000490573	ENST00000474299		TCGA	RV	LGG	TCGA-FG-5963-01A	TAP2	chr6	32797177	-	VARS	chr6	31760897	-
In-frame	ENST00000402136	ENST00000409592		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
In-frame	ENST00000402136	ENST00000258390		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
5CDS-5UTR	ENST00000402136	ENST00000474102		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
In-frame	ENST00000407315	ENST00000409592		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
In-frame	ENST00000407315	ENST00000258390		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
5CDS-5UTR	ENST00000407315	ENST00000474102		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
intron-3CDS	ENST00000402545	ENST00000409592		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
intron-3CDS	ENST00000402545	ENST00000258390		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
intron-5UTR	ENST00000402545	ENST00000474102		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
5UTR-3CDS	ENST00000497486	ENST00000409592		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
5UTR-3CDS	ENST00000497486	ENST00000258390		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
5UTR-5UTR	ENST00000497486	ENST00000474102		TCGA	RV	LGG	TCGA-S9-A6U6-01A	THAP4	chr2	242541311	-	DOCK10	chr2	225761094	-
5CDS-intron	ENST00000232607	ENST00000477496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000460856		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000240874		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000360013		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000393496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000291478		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000428018		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-5UTR	ENST00000232607	ENST00000459915		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5CDS-intron	ENST00000232607	ENST00000462213		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000477496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000460856		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000240874		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000360013		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000393496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000291478		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000428018		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-5UTR	ENST00000413078	ENST00000459915		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000413078	ENST00000462213		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000477496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000460856		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000240874		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000360013		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000393496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000291478		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000428018		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-5UTR	ENST00000538242	ENST00000459915		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000538242	ENST00000462213		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000477496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000460856		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000240874		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000360013		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000393496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000291478		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000428018		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-5UTR	ENST00000536109	ENST00000459915		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
5UTR-intron	ENST00000536109	ENST00000462213		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000477496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000460856		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000240874		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000360013		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000393496		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000291478		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000428018		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-5UTR	ENST00000498715	ENST00000459915		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
intron-intron	ENST00000498715	ENST00000462213		TCGA	RV	LGG	TCGA-DU-7006-01A	UMPS	chr3	124449474	+	KALRN	chr3	124369655	+
In-frame	ENST00000267199	ENST00000389153		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000267199	ENST00000608853		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000267199	ENST00000377617		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000267199	ENST00000550104		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000267199	ENST00000542287		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000267199	ENST00000535949		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000267199	ENST00000549455		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-3CDS	ENST00000542310	ENST00000389153		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-3CDS	ENST00000542310	ENST00000608853		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-3CDS	ENST00000542310	ENST00000377617		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-3CDS	ENST00000542310	ENST00000550104		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-3CDS	ENST00000542310	ENST00000542287		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-3CDS	ENST00000542310	ENST00000535949		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5UTR-intron	ENST00000542310	ENST00000549455		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000451053	ENST00000389153		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000451053	ENST00000608853		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000451053	ENST00000377617		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000451053	ENST00000550104		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000451053	ENST00000542287		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
In-frame	ENST00000451053	ENST00000535949		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000451053	ENST00000549455		TCGA	RV	LGG	TCGA-DU-6397-02A	VPS33A	chr12	122745808	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000603594	ENST00000371581		TCGA	RV	LGG	TCGA-P5-A5EU-01A	VWA2	chr10	116042330	+	IDE	chr10	94297307	-
5CDS-intron	ENST00000603594	ENST00000265986		TCGA	RV	LGG	TCGA-P5-A5EU-01A	VWA2	chr10	116042330	+	IDE	chr10	94297307	-
5CDS-intron	ENST00000603594	ENST00000496903		TCGA	RV	LGG	TCGA-P5-A5EU-01A	VWA2	chr10	116042330	+	IDE	chr10	94297307	-
5CDS-intron	ENST00000392982	ENST00000371581		TCGA	RV	LGG	TCGA-P5-A5EU-01A	VWA2	chr10	116042330	+	IDE	chr10	94297307	-
5CDS-intron	ENST00000392982	ENST00000265986		TCGA	RV	LGG	TCGA-P5-A5EU-01A	VWA2	chr10	116042330	+	IDE	chr10	94297307	-
5CDS-intron	ENST00000392982	ENST00000496903		TCGA	RV	LGG	TCGA-P5-A5EU-01A	VWA2	chr10	116042330	+	IDE	chr10	94297307	-
5UTR-3CDS	ENST00000589046	ENST00000263434		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000589046	ENST00000376350		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-intron	ENST00000589046	ENST00000588559		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000420450	ENST00000263434		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000420450	ENST00000376350		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-intron	ENST00000420450	ENST00000588559		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000526123	ENST00000263434		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000526123	ENST00000376350		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-intron	ENST00000526123	ENST00000588559		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
3UTR-3CDS	ENST00000432005	ENST00000263434		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
3UTR-3CDS	ENST00000432005	ENST00000376350		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
3UTR-intron	ENST00000432005	ENST00000588559		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000529555	ENST00000263434		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-3CDS	ENST00000529555	ENST00000376350		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
5UTR-intron	ENST00000529555	ENST00000588559		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	PTPRH	chr19	55699536	-
Frame-shit	ENST00000429654	ENST00000355272		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000429654	ENST00000356926		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000429654	ENST00000350812		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000429654	ENST00000345016		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
5CDS-5UTR	ENST00000429654	ENST00000590683		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000340180	ENST00000355272		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000340180	ENST00000356926		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000340180	ENST00000350812		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
Frame-shit	ENST00000340180	ENST00000345016		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
5CDS-5UTR	ENST00000340180	ENST00000590683		TCGA	RV	LGG	TCGA-DU-8167-01A	ZNF69	chr19	11998801	+	AP3D1	chr19	2121878	-
5CDS-5UTR	ENST00000295851	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000295851	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000295851	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000261017	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000261017	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000261017	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000430418	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000430418	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000430418	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000424558	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000424558	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000424558	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000261016	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000261016	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000261016	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000422511	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000422511	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000422511	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
intron-5UTR	ENST00000430574	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
intron-5UTR	ENST00000430574	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
intron-5UTR	ENST00000430574	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
intron-5UTR	ENST00000261018	ENST00000307275		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
intron-5UTR	ENST00000261018	ENST00000591576		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
intron-5UTR	ENST00000261018	ENST00000592695		TCGA	RV	LGG	TCGA-QH-A6CV-01A	ABI2	chr2	204231767	+	HEXIM2	chr17	43240117	+
5CDS-5UTR	ENST00000260408	ENST00000356321		TCGA	RV	LGG	TCGA-HT-8011-01A	ADAM10	chr15	59041679	-	ZNF770	chr15	35279874	-
5CDS-5UTR	ENST00000402627	ENST00000356321		TCGA	RV	LGG	TCGA-HT-8011-01A	ADAM10	chr15	59041679	-	ZNF770	chr15	35279874	-
5CDS-5UTR	ENST00000561288	ENST00000356321		TCGA	RV	LGG	TCGA-HT-8011-01A	ADAM10	chr15	59041679	-	ZNF770	chr15	35279874	-
5CDS-5UTR	ENST00000396140	ENST00000356321		TCGA	RV	LGG	TCGA-HT-8011-01A	ADAM10	chr15	59041679	-	ZNF770	chr15	35279874	-
5UTR-5UTR	ENST00000558733	ENST00000356321		TCGA	RV	LGG	TCGA-HT-8011-01A	ADAM10	chr15	59041679	-	ZNF770	chr15	35279874	-
5CDS-5UTR	ENST00000294016	ENST00000304735		TCGA	RV	LGG	TCGA-KT-A7W1-01A	ADCY9	chr16	4163751	-	VASN	chr16	4430870	+
intron-5UTR	ENST00000571889	ENST00000304735		TCGA	RV	LGG	TCGA-KT-A7W1-01A	ADCY9	chr16	4163751	-	VASN	chr16	4430870	+
5UTR-3CDS	ENST00000392038	ENST00000262803		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
5UTR-3CDS	ENST00000392038	ENST00000599848		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
5UTR-intron	ENST00000392038	ENST00000600310		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-3CDS	ENST00000424901	ENST00000262803		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-3CDS	ENST00000424901	ENST00000599848		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-intron	ENST00000424901	ENST00000600310		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-3CDS	ENST00000311278	ENST00000262803		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-3CDS	ENST00000311278	ENST00000599848		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-intron	ENST00000311278	ENST00000600310		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
5UTR-3CDS	ENST00000579047	ENST00000262803		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
5UTR-3CDS	ENST00000579047	ENST00000599848		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
5UTR-intron	ENST00000579047	ENST00000600310		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-3CDS	ENST00000581582	ENST00000262803		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-3CDS	ENST00000581582	ENST00000599848		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
intron-intron	ENST00000581582	ENST00000600310		TCGA	RV	LGG	TCGA-P5-A5EU-01A	AKT2	chr19	40791088	-	UPF1	chr19	18956789	+
5CDS-intron	ENST00000395319	ENST00000378746		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395319	ENST00000378735		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395319	ENST00000403231		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395319	ENST00000487055		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395321	ENST00000378746		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395321	ENST00000378735		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395321	ENST00000403231		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000395321	ENST00000487055		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000226253	ENST00000378746		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000226253	ENST00000378735		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000226253	ENST00000403231		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000226253	ENST00000487055		TCGA	RV	LGG	TCGA-HT-8108-01A	ALDOC	chr17	26900133	-	KIF3A	chr5	132035266	-
5CDS-5UTR	ENST00000455511	ENST00000261401		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000455511	ENST00000541050		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000455511	ENST00000549384		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000455511	ENST00000421578		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000455511	ENST00000420959		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000455511	ENST00000549772		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000481473	ENST00000261401		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000481473	ENST00000541050		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000481473	ENST00000549384		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000481473	ENST00000421578		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000481473	ENST00000420959		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000481473	ENST00000549772		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000450008	ENST00000261401		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000450008	ENST00000541050		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000450008	ENST00000549384		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000450008	ENST00000421578		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000450008	ENST00000420959		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000450008	ENST00000549772		TCGA	RV	LGG	TCGA-P5-A736-01A	ANAPC7	chr12	110841332	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000434513	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000434513	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000434513	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000361221	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000361221	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000361221	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000452522	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000452522	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000452522	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375415	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375415	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375415	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375420	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375420	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375420	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
3UTR-intron	ENST00000469726	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
3UTR-intron	ENST00000469726	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
3UTR-intron	ENST00000469726	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375408	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375408	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000375408	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000167825	ENST00000375453		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000167825	ENST00000375448		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5CDS-intron	ENST00000167825	ENST00000487048		TCGA	RV	LGG	TCGA-VM-A8CD-01A	ARHGEF10L	chr1	17965184	+	PADI4	chr1	17664533	+
5UTR-3CDS	ENST00000337198	ENST00000302640		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000337198	ENST00000354582		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000337198	ENST00000423119		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000337198	ENST00000456211		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000337198	ENST00000357086		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000337198	ENST00000544951		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000337198	ENST00000443694		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-intron	ENST00000337198	ENST00000463980		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000302640		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000354582		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000423119		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000456211		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000357086		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000544951		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000347770	ENST00000443694		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-intron	ENST00000347770	ENST00000463980		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000302640		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000354582		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000423119		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000456211		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000357086		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000544951		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-3CDS	ENST00000522311	ENST00000443694		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5UTR-intron	ENST00000522311	ENST00000463980		TCGA	RV	LGG	TCGA-DU-A7TA-01A	AZIN1	chr8	103870241	-	ITPR1	chr3	4669447	+
5CDS-intron	ENST00000575403	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000575403	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000477478	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
intron-intron	ENST00000468679	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000461069	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395615	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000261499	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000395616	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000441293		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000314728		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000347697		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000395618		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000575595		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000395620		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000395626		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
5CDS-intron	ENST00000268841	ENST00000571254		TCGA	RV	LGG	TCGA-P5-A5F1-01A	B9D1	chr17	19250582	-	EPN2	chr17	19232024	+
In-frame	ENST00000517894	ENST00000378204		TCGA	RV	LGG	TCGA-HW-A5KK-01A	BAI1	chr8	143592434	+	EXT1	chr8	118834836	-
In-frame	ENST00000323289	ENST00000378204		TCGA	RV	LGG	TCGA-HW-A5KK-01A	BAI1	chr8	143592434	+	EXT1	chr8	118834836	-
Frame-shit	ENST00000589222	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000589222	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000407086	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000407086	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000390652	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000390652	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000408905	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000408905	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000588462	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000588462	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000585744	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000585744	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
Frame-shit	ENST00000588874	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000588874	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
intron-3CDS	ENST00000585812	ENST00000305783		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
intron-5UTR	ENST00000585812	ENST00000442346		TCGA	RV	LGG	TCGA-DB-A4XF-01A	BCAS3	chr17	59161925	+	RNFT1	chr17	58040645	-
5CDS-5UTR	ENST00000255608	ENST00000404279		TCGA	RV	LGG	TCGA-HT-7475-01A	BTBD2	chr19	2015296	-	LINGO3	chr19	2291821	-
5CDS-5UTR	ENST00000255608	ENST00000585527		TCGA	RV	LGG	TCGA-HT-7475-01A	BTBD2	chr19	2015296	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000590646	ENST00000404279		TCGA	RV	LGG	TCGA-HT-7475-01A	BTBD2	chr19	2015296	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000590646	ENST00000585527		TCGA	RV	LGG	TCGA-HT-7475-01A	BTBD2	chr19	2015296	-	LINGO3	chr19	2291821	-
In-frame	ENST00000561924	ENST00000323786		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000561924	ENST00000393612		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000561924	ENST00000564653		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000290858	ENST00000323786		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000290858	ENST00000393612		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000290858	ENST00000564653		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000412916	ENST00000323786		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000412916	ENST00000393612		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
In-frame	ENST00000412916	ENST00000564653		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
intron-3CDS	ENST00000568858	ENST00000323786		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
intron-3CDS	ENST00000568858	ENST00000393612		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
intron-3CDS	ENST00000568858	ENST00000564653		TCGA	RV	LGG	TCGA-S9-A7R7-01A	CBFB	chr16	67100701	+	COG4	chr16	70553634	-
intron-3CDS	ENST00000395290	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395290	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395290	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395290	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000395290	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000358597	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000358597	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000395292	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000395292	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000310513	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000310513	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000361904	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000361904	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000539455	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000539455	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000531165	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000531165	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000529202		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000263182		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000528583		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3CDS	ENST00000532048	ENST00000525090		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
intron-3UTR	ENST00000532048	ENST00000527505		TCGA	RV	LGG	TCGA-FG-5963-02A	CELF1	chr11	47586826	-	BBOX1	chr11	27141196	+
In-frame	ENST00000292672	ENST00000171214		TCGA	RV	LGG	TCGA-TM-A7CF-02A	CELF5	chr19	3224996	+	RDH8	chr19	10127733	+
In-frame	ENST00000292672	ENST00000591589		TCGA	RV	LGG	TCGA-TM-A7CF-02A	CELF5	chr19	3224996	+	RDH8	chr19	10127733	+
In-frame	ENST00000541430	ENST00000171214		TCGA	RV	LGG	TCGA-TM-A7CF-02A	CELF5	chr19	3224996	+	RDH8	chr19	10127733	+
In-frame	ENST00000541430	ENST00000591589		TCGA	RV	LGG	TCGA-TM-A7CF-02A	CELF5	chr19	3224996	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000588101	ENST00000171214		TCGA	RV	LGG	TCGA-TM-A7CF-02A	CELF5	chr19	3224996	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000588101	ENST00000591589		TCGA	RV	LGG	TCGA-TM-A7CF-02A	CELF5	chr19	3224996	+	RDH8	chr19	10127733	+
5UTR-3CDS	ENST00000278935	ENST00000313005		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-3CDS	ENST00000278935	ENST00000528053		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-3CDS	ENST00000278935	ENST00000445823		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-3CDS	ENST00000278935	ENST00000428381		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-3CDS	ENST00000278935	ENST00000513780		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-5UTR	ENST00000278935	ENST00000514464		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-5UTR	ENST00000278935	ENST00000392937		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
5UTR-5UTR	ENST00000278935	ENST00000510630		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-3CDS	ENST00000533706	ENST00000313005		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-3CDS	ENST00000533706	ENST00000528053		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-3CDS	ENST00000533706	ENST00000445823		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-3CDS	ENST00000533706	ENST00000428381		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-3CDS	ENST00000533706	ENST00000513780		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-5UTR	ENST00000533706	ENST00000514464		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-5UTR	ENST00000533706	ENST00000392937		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-5UTR	ENST00000533706	ENST00000510630		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CEP164	chr11	117206396	+	BACE1	chr11	117166063	-
intron-3CDS	ENST00000337195	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-intron	ENST00000337195	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-3CDS	ENST00000531469	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-intron	ENST00000531469	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-3CDS	ENST00000494626	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-intron	ENST00000494626	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
5UTR-3CDS	ENST00000411419	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
5UTR-intron	ENST00000411419	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
5UTR-3CDS	ENST00000476817	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
5UTR-intron	ENST00000476817	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-3CDS	ENST00000309035	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-intron	ENST00000309035	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-3CDS	ENST00000334808	ENST00000306010		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
intron-intron	ENST00000334808	ENST00000462672		TCGA	RV	LGG	TCGA-FG-5965-02B	CTBP2	chr10	126849396	-	MGMT	chr10	131334505	+
5UTR-5UTR	ENST00000346329	ENST00000312293		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000346329	ENST00000393681		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000346329	ENST00000393679		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000346329	ENST00000393676		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000312293		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000393681		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000393679		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000301843	ENST00000393676		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000312293		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000393681		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000393679		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
3UTR-5UTR	ENST00000527622	ENST00000393676		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000312293		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000393681		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000393679		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000376561	ENST00000393676		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000312293		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000393681		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000393679		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000538675	ENST00000393676		TCGA	RV	LGG	TCGA-DU-5871-01A	CTTN	chr11	70244720	+	FOLR1	chr11	71903210	+
intron-3CDS	ENST00000527706	ENST00000323468		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
intron-3CDS	ENST00000527706	ENST00000434945		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
intron-5UTR	ENST00000527706	ENST00000532730		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
intron-intron	ENST00000527706	ENST00000375648		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
In-frame	ENST00000321322	ENST00000323468		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
Frame-shit	ENST00000321322	ENST00000434945		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
5CDS-5UTR	ENST00000321322	ENST00000532730		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
5CDS-intron	ENST00000321322	ENST00000375648		TCGA	RV	LGG	TCGA-FG-8191-01A	DSCAML1	chr11	117647506	-	KDELC2	chr11	108345679	-
intron-3CDS	ENST00000199389	ENST00000223145		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	EIF2AK1	chr7	6064340	-	GLCCI1	chr7	8124527	+
intron-intron	ENST00000199389	ENST00000474269		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	EIF2AK1	chr7	6064340	-	GLCCI1	chr7	8124527	+
Frame-shit	ENST00000536084	ENST00000223145		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	EIF2AK1	chr7	6064340	-	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000536084	ENST00000474269		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	EIF2AK1	chr7	6064340	-	GLCCI1	chr7	8124527	+
intron-3CDS	ENST00000495565	ENST00000223145		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	EIF2AK1	chr7	6064340	-	GLCCI1	chr7	8124527	+
intron-intron	ENST00000495565	ENST00000474269		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	EIF2AK1	chr7	6064340	-	GLCCI1	chr7	8124527	+
intron-3CDS	ENST00000389560	ENST00000424459		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000389560	ENST00000514387		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000389560	ENST00000506184		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000389560	ENST00000454432		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000389560	ENST00000511209		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000389560	ENST00000264779		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000389560	ENST00000538707		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-3CDS	ENST00000443539	ENST00000424459		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000443539	ENST00000514387		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000443539	ENST00000506184		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000443539	ENST00000454432		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000443539	ENST00000511209		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000443539	ENST00000264779		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000443539	ENST00000538707		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-3CDS	ENST00000392352	ENST00000424459		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000392352	ENST00000514387		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000392352	ENST00000506184		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000392352	ENST00000454432		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000392352	ENST00000511209		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000392352	ENST00000264779		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
intron-5UTR	ENST00000392352	ENST00000538707		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-3CDS	ENST00000361109	ENST00000424459		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000361109	ENST00000514387		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000361109	ENST00000506184		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000361109	ENST00000454432		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000361109	ENST00000511209		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000361109	ENST00000264779		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000361109	ENST00000538707		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-3CDS	ENST00000376625	ENST00000424459		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000376625	ENST00000514387		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000376625	ENST00000506184		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000376625	ENST00000454432		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000376625	ENST00000511209		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000376625	ENST00000264779		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000376625	ENST00000538707		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-3CDS	ENST00000475841	ENST00000424459		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000475841	ENST00000514387		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000475841	ENST00000506184		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000475841	ENST00000454432		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000475841	ENST00000511209		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000475841	ENST00000264779		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
3UTR-5UTR	ENST00000475841	ENST00000538707		TCGA	RV	LGG	TCGA-TM-A84I-01A	EP400NL	chr12	132606525	+	GPBP1	chr5	56526673	+
Frame-shit	ENST00000324331	ENST00000410107		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000324331	ENST00000397423		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000324331	ENST00000495262		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000324331	ENST00000379597		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000324331	ENST00000316170		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000324331	ENST00000265012		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
Frame-shit	ENST00000274680	ENST00000410107		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000274680	ENST00000397423		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000274680	ENST00000495262		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000274680	ENST00000379597		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000274680	ENST00000316170		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
5CDS-3UTR	ENST00000274680	ENST00000265012		TCGA	RV	LGG	TCGA-FG-7636-01A	FARS2	chr6	5613553	+	GCNT2	chr6	10621584	+
3UTR-3CDS	ENST00000257868	ENST00000040584		TCGA	RV	LGG	TCGA-DH-A7UV-01A	GDF11	chr12	56143667	+	HOXC8	chr12	54404873	+
intron-3CDS	ENST00000331872	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
intron-intron	ENST00000331872	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000417584	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
intron-intron	ENST00000417584	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000311223	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
intron-intron	ENST00000311223	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000491322	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000491322	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000339526	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000339526	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7610-01A	GLUL	chr1	182352029	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000326737	ENST00000311160		TCGA	RV	LGG	TCGA-FG-5963-01A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
Frame-shit	ENST00000326737	ENST00000355730		TCGA	RV	LGG	TCGA-FG-5963-01A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
Frame-shit	ENST00000326737	ENST00000398879		TCGA	RV	LGG	TCGA-FG-5963-01A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-intron	ENST00000326737	ENST00000442536		TCGA	RV	LGG	TCGA-FG-5963-01A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-intron	ENST00000326737	ENST00000458317		TCGA	RV	LGG	TCGA-FG-5963-01A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-intron	ENST00000326737	ENST00000474346		TCGA	RV	LGG	TCGA-FG-5963-01A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-5UTR	ENST00000225983	ENST00000354329		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000225983	ENST00000529578		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000225983	ENST00000533112		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000225983	ENST00000531253		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000225983	ENST00000527372		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000393622	ENST00000354329		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000393622	ENST00000529578		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000393622	ENST00000533112		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000393622	ENST00000531253		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000393622	ENST00000527372		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000336057	ENST00000354329		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000336057	ENST00000529578		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000336057	ENST00000533112		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000336057	ENST00000531253		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000336057	ENST00000527372		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000586802	ENST00000354329		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000586802	ENST00000529578		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000586802	ENST00000533112		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000586802	ENST00000531253		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000586802	ENST00000527372		TCGA	RV	LGG	TCGA-TQ-A7RP-01A	HDAC5	chr17	42194862	-	MYO18A	chr17	27494039	-
Frame-shit	ENST00000340855	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000340855	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000340855	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-3UTR	ENST00000340855	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000340855	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000340855	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000340855	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000340855	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000537071	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000537071	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000537071	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000537071	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000537071	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000537071	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000537071	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000537071	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
In-frame	ENST00000541269	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000541269	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000541269	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-3UTR	ENST00000541269	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000541269	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000541269	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000541269	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000541269	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
In-frame	ENST00000422081	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000422081	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000422081	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-3UTR	ENST00000422081	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000422081	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000422081	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000422081	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000422081	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
Frame-shit	ENST00000370441	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370441	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370441	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-3UTR	ENST00000370441	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000370441	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000370441	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370441	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370441	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-3CDS	ENST00000490775	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-intron	ENST00000490775	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-intron	ENST00000490775	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-3UTR	ENST00000490775	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-5UTR	ENST00000490775	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-5UTR	ENST00000490775	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-intron	ENST00000490775	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5UTR-intron	ENST00000490775	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
Frame-shit	ENST00000370443	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370443	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370443	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-3UTR	ENST00000370443	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000370443	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-5UTR	ENST00000370443	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370443	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
5CDS-intron	ENST00000370443	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000427113	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000427113	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000427113	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000427113	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000427113	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000427113	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000427113	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000427113	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000428056	ENST00000379350		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000428056	ENST00000379348		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000428056	ENST00000332995		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000428056	ENST00000482982		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000428056	ENST00000379345		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000428056	ENST00000457702		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000428056	ENST00000379335		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
intron-intron	ENST00000428056	ENST00000379329		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	IDS	chrX	148577877	-	PHACTR1	chr6	13160436	+
Frame-shit	ENST00000368594	ENST00000304129		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
Frame-shit	ENST00000368594	ENST00000369271		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
Frame-shit	ENST00000368594	ENST00000545353		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
5CDS-intron	ENST00000368594	ENST00000491814		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
Frame-shit	ENST00000368593	ENST00000304129		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
Frame-shit	ENST00000368593	ENST00000369271		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
Frame-shit	ENST00000368593	ENST00000545353		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
5CDS-intron	ENST00000368593	ENST00000491814		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000487614	ENST00000304129		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000487614	ENST00000369271		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000487614	ENST00000545353		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
intron-intron	ENST00000487614	ENST00000491814		TCGA	RV	LGG	TCGA-P5-A5EU-01A	INPP5A	chr10	134351675	+	AFAP1L2	chr10	116100490	-
5UTR-3CDS	ENST00000378097	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378097	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378097	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378097	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378097	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-intron	ENST00000378097	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000352527	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000352527	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000352527	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000352527	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000352527	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000352527	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000341524	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000341524	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000341524	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000341524	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000341524	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000341524	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000164247	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000164247	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000164247	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000164247	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000164247	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000164247	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378083	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378083	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378083	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378083	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378083	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000378083	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378111	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378111	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378111	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378111	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378111	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000378111	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378092	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378092	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378092	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378092	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-3CDS	ENST00000378092	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
5UTR-intron	ENST00000378092	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000602612	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000602612	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000602612	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000602612	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000602612	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000602612	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378087	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378087	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378087	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378087	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000378087	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000378087	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000459822	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000459822	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000459822	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000459822	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000459822	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000459822	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000458166	ENST00000377093		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000458166	ENST00000263934		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000458166	ENST00000377086		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000458166	ENST00000377083		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-3CDS	ENST00000458166	ENST00000377081		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
intron-intron	ENST00000458166	ENST00000465635		TCGA	RV	LGG	TCGA-DU-6395-01A	KCNAB2	chr1	6052848	+	KIF1B	chr1	10316305	+
In-frame	ENST00000535193	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000535193	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000535193	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
In-frame	ENST00000543771	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000543771	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000543771	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
In-frame	ENST00000381306	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000381306	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000381306	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
In-frame	ENST00000381309	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000381309	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000381309	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
In-frame	ENST00000442236	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000442236	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000442236	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
3UTR-3CDS	ENST00000489243	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
3UTR-3UTR	ENST00000489243	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
3UTR-3UTR	ENST00000489243	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
In-frame	ENST00000536108	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000536108	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
5CDS-3UTR	ENST00000536108	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3CDS	ENST00000428870	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3UTR	ENST00000428870	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3UTR	ENST00000428870	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3CDS	ENST00000401787	ENST00000544237		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3UTR	ENST00000401787	ENST00000476115		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3UTR	ENST00000401787	ENST00000242315		TCGA	RV	LGG	TCGA-S9-A7R1-01A	KDM4C	chr9	6893232	+	KIAA1045	chr9	34976149	+
intron-3CDS	ENST00000452825	ENST00000358075		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
intron-intron	ENST00000452825	ENST00000373336		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
Frame-shit	ENST00000375401	ENST00000358075		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
5CDS-intron	ENST00000375401	ENST00000373336		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
Frame-shit	ENST00000404049	ENST00000358075		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
5CDS-intron	ENST00000404049	ENST00000373336		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
Frame-shit	ENST00000375379	ENST00000358075		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
5CDS-intron	ENST00000375379	ENST00000373336		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
Frame-shit	ENST00000375383	ENST00000358075		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
5CDS-intron	ENST00000375383	ENST00000373336		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
intron-3CDS	ENST00000465402	ENST00000358075		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
intron-intron	ENST00000465402	ENST00000373336		TCGA	RV	LGG	TCGA-VV-A86M-01A	KDM5C	chrX	53222619	-	MAGT1	chrX	77086392	-
In-frame	ENST00000543923	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000543923	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-3CDS	ENST00000435985	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5UTR-intron	ENST00000435985	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
In-frame	ENST00000280020	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000280020	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
In-frame	ENST00000591619	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-intron	ENST00000591619	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-3CDS	ENST00000586135	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586135	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-3CDS	ENST00000592521	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000592521	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-3CDS	ENST00000586501	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000586501	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-3CDS	ENST00000601437	ENST00000513024		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000509638		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000508501		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000512946		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000313860		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000512632		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000512820		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000503057		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000511496		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000514096		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000509277		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000396595		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000381753		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000509454		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
intron-intron	ENST00000601437	ENST00000515785		TCGA	RV	LGG	TCGA-DU-6407-02B	KIAA1328	chr18	34539398	+	LIMCH1	chr4	41663437	+
5CDS-5UTR	ENST00000369325	ENST00000322507		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369325	ENST00000345356		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369325	ENST00000416123		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369325	ENST00000483888		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369325	ENST00000511023		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369327	ENST00000322507		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369327	ENST00000345356		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369327	ENST00000416123		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369327	ENST00000483888		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369327	ENST00000511023		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369332	ENST00000322507		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369332	ENST00000345356		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369332	ENST00000416123		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369332	ENST00000483888		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369332	ENST00000511023		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369329	ENST00000322507		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369329	ENST00000345356		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369329	ENST00000416123		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369329	ENST00000483888		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369329	ENST00000511023		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5UTR-5UTR	ENST00000479630	ENST00000322507		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5UTR-5UTR	ENST00000479630	ENST00000345356		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5UTR-intron	ENST00000479630	ENST00000416123		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5UTR-5UTR	ENST00000479630	ENST00000483888		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5UTR-intron	ENST00000479630	ENST00000511023		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369320	ENST00000322507		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369320	ENST00000345356		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369320	ENST00000416123		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-5UTR	ENST00000369320	ENST00000483888		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5CDS-intron	ENST00000369320	ENST00000511023		TCGA	RV	LGG	TCGA-DU-6404-02B	MAP3K7	chr6	91246056	-	COL12A1	chr6	75912543	-
5UTR-3CDS	ENST00000261845	ENST00000308580		TCGA	RV	LGG	TCGA-HT-7880-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52179786	+
5UTR-3CDS	ENST00000261845	ENST00000544199		TCGA	RV	LGG	TCGA-HT-7880-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52179786	+
5UTR-intron	ENST00000261845	ENST00000561136		TCGA	RV	LGG	TCGA-HT-7880-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52179786	+
intron-3CDS	ENST00000558841	ENST00000308580		TCGA	RV	LGG	TCGA-HT-7880-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52179786	+
intron-3CDS	ENST00000558841	ENST00000544199		TCGA	RV	LGG	TCGA-HT-7880-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52179786	+
intron-intron	ENST00000558841	ENST00000561136		TCGA	RV	LGG	TCGA-HT-7880-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52179786	+
5CDS-5UTR	ENST00000446906	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000446906	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000377072	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000307729	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000377059	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-3UTR	ENST00000495130	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-3UTR	ENST00000377100	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-3UTR	ENST00000377091	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-intron	ENST00000378137	ENST00000261207		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000378137	ENST00000450142		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000378137	ENST00000437004		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000378137	ENST00000546369		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000378137	ENST00000550107		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
5CDS-intron	ENST00000325718	ENST00000261207		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
5CDS-intron	ENST00000325718	ENST00000450142		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
5CDS-intron	ENST00000325718	ENST00000437004		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
5CDS-intron	ENST00000325718	ENST00000546369		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
5CDS-intron	ENST00000325718	ENST00000550107		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000579179	ENST00000261207		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000579179	ENST00000450142		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000579179	ENST00000437004		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000579179	ENST00000546369		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
intron-intron	ENST00000579179	ENST00000550107		TCGA	RV	LGG	TCGA-DU-A5TP-01A	MLLT6	chr17	36879021	+	PPP1R12A	chr12	80242711	-
5UTR-3CDS	ENST00000393223	ENST00000524717		TCGA	RV	LGG	TCGA-HT-7477-01B	MTMR2	chr11	95621320	-	MAML2	chr11	95826681	-
In-frame	ENST00000346299	ENST00000524717		TCGA	RV	LGG	TCGA-HT-7477-01B	MTMR2	chr11	95621320	-	MAML2	chr11	95826681	-
5UTR-3CDS	ENST00000409459	ENST00000524717		TCGA	RV	LGG	TCGA-HT-7477-01B	MTMR2	chr11	95621320	-	MAML2	chr11	95826681	-
5UTR-3CDS	ENST00000352297	ENST00000524717		TCGA	RV	LGG	TCGA-HT-7477-01B	MTMR2	chr11	95621320	-	MAML2	chr11	95826681	-
5UTR-3CDS	ENST00000484818	ENST00000524717		TCGA	RV	LGG	TCGA-HT-7477-01B	MTMR2	chr11	95621320	-	MAML2	chr11	95826681	-
5CDS-5UTR	ENST00000547405	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000547405	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000547405	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547405	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547405	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547405	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547405	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000452455	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000452455	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000452455	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000452455	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000452455	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000452455	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000452455	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000360610	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000360610	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000360610	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000360610	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000360610	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000360610	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000360610	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000441232	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000441232	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000441232	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000441232	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000441232	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000441232	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000441232	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000392934	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000392934	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000392934	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000392934	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000392934	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000392934	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000392934	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000547509	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000547509	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000547509	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547509	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547509	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547509	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000547509	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000361685	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000361685	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000361685	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361685	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361685	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361685	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361685	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-5UTR	ENST00000550501	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-5UTR	ENST00000550501	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-5UTR	ENST00000550501	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-intron	ENST00000550501	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-intron	ENST00000550501	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-intron	ENST00000550501	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
intron-intron	ENST00000550501	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000549145	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000549145	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000549145	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000549145	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000549145	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000549145	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000549145	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000553190	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000553190	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000553190	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000553190	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000553190	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000553190	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000553190	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000536007	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000536007	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000536007	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000536007	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000536007	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000536007	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000536007	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000541119	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000541119	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000541119	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000541119	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000541119	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000541119	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000541119	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000545503	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000545503	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000545503	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000545503	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000545503	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000545503	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000545503	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000361466	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000361466	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000361466	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361466	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361466	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361466	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000361466	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000551300	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000551300	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000551300	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000551300	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000551300	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000551300	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000551300	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000550270	ENST00000458477		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000550270	ENST00000228307		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-5UTR	ENST00000550270	ENST00000424649		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000550270	ENST00000397506		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000550270	ENST00000536957		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000550270	ENST00000267257		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
5CDS-intron	ENST00000550270	ENST00000538144		TCGA	RV	LGG	TCGA-E1-5303-01A	MYBPC1	chr12	102057338	+	PXN	chr12	120662180	-
Frame-shit	ENST00000400546	ENST00000284885		TCGA	RV	LGG	TCGA-P5-A72W-01A	NCAM2	chr21	22370936	+	TMPRSS15	chr21	19653538	-
Frame-shit	ENST00000284894	ENST00000284885		TCGA	RV	LGG	TCGA-P5-A72W-01A	NCAM2	chr21	22370936	+	TMPRSS15	chr21	19653538	-
intron-3CDS	ENST00000535285	ENST00000284885		TCGA	RV	LGG	TCGA-P5-A72W-01A	NCAM2	chr21	22370936	+	TMPRSS15	chr21	19653538	-
intron-3CDS	ENST00000486367	ENST00000284885		TCGA	RV	LGG	TCGA-P5-A72W-01A	NCAM2	chr21	22370936	+	TMPRSS15	chr21	19653538	-
5UTR-3CDS	ENST00000226574	ENST00000226578		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
5UTR-3CDS	ENST00000226574	ENST00000505239		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
5UTR-3CDS	ENST00000394820	ENST00000226578		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
5UTR-3CDS	ENST00000394820	ENST00000505239		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
intron-3CDS	ENST00000505458	ENST00000226578		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
intron-3CDS	ENST00000505458	ENST00000505239		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
intron-3CDS	ENST00000510638	ENST00000226578		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
intron-3CDS	ENST00000510638	ENST00000505239		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
intron-3CDS	ENST00000600343	ENST00000226578		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
intron-3CDS	ENST00000600343	ENST00000505239		TCGA	RV	LGG	TCGA-E1-5304-01A	NFKB1	chr4	103422945	+	MANBA	chr4	103571858	-
5UTR-3CDS	ENST00000478423	ENST00000608083		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000478423	ENST00000377855		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000478423	ENST00000545482		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000478423	ENST00000361521		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000478423	ENST00000377842		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000478423	ENST00000377845		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-intron	ENST00000478423	ENST00000541130		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000378156	ENST00000608083		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000378156	ENST00000377855		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000378156	ENST00000545482		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000378156	ENST00000361521		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000378156	ENST00000377842		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000378156	ENST00000377845		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-intron	ENST00000378156	ENST00000541130		TCGA	RV	LGG	TCGA-DU-6395-01A	NPHP4	chr1	6052304	-	ACOT7	chr1	6355040	-
5UTR-3CDS	ENST00000374875	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-3CDS	ENST00000374875	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-3CDS	ENST00000374875	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-3CDS	ENST00000374875	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-3CDS	ENST00000374875	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-3CDS	ENST00000374875	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-3CDS	ENST00000374875	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5UTR-intron	ENST00000374875	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000265371	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000265371	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000265371	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000265371	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000265371	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000265371	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000265371	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000265371	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374867	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374867	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374867	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374867	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374867	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374867	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374867	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000374867	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000395995	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000395995	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000395995	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000395995	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000395995	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000395995	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000395995	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000395995	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374821	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374821	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374821	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374821	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374821	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374821	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374821	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000374821	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374822	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374822	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374822	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374822	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374822	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374822	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374822	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000374822	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374823	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374823	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374823	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374823	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374823	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374823	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374823	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000374823	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374816	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374816	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374816	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374816	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374816	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374816	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000374816	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000374816	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000432372	ENST00000374746		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000432372	ENST00000374748		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000432372	ENST00000374749		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000432372	ENST00000374751		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000432372	ENST00000602371		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
Frame-shit	ENST00000432372	ENST00000374742		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000432372	ENST00000537177		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
5CDS-intron	ENST00000432372	ENST00000478044		TCGA	RV	LGG	TCGA-HT-7690-01A	NRP1	chr10	33619636	-	CUL2	chr10	35299370	-
In-frame	ENST00000374791	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
5CDS-5UTR	ENST00000374791	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
In-frame	ENST00000539799	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
5CDS-5UTR	ENST00000539799	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
In-frame	ENST00000427481	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
5CDS-5UTR	ENST00000427481	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
In-frame	ENST00000374786	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
5CDS-5UTR	ENST00000374786	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
In-frame	ENST00000425719	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
5CDS-5UTR	ENST00000425719	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
In-frame	ENST00000374784	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
5CDS-5UTR	ENST00000374784	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
intron-3CDS	ENST00000474900	ENST00000227520		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
intron-5UTR	ENST00000474900	ENST00000545580		TCGA	RV	LGG	TCGA-HT-7686-01A	NTM	chr11	131781542	+	CCDC86	chr11	60615397	+
Frame-shit	ENST00000563679	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000563679	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000563679	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000563679	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000325823	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000325823	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000325823	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000325823	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000447912	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000447912	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000447912	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000447912	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000535621	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000535621	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000535621	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000535621	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
intron-3CDS	ENST00000455313	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
intron-3CDS	ENST00000455313	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
intron-3CDS	ENST00000455313	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
intron-intron	ENST00000455313	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000396410	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000396410	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000396410	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000396410	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000569715	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000569715	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000569715	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000569715	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000450288	ENST00000261658		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000450288	ENST00000563971		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
Frame-shit	ENST00000450288	ENST00000426842		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
5CDS-intron	ENST00000450288	ENST00000563082		TCGA	RV	LGG	TCGA-DB-A64Q-01A	PDXDC1	chr16	15123913	+	BFAR	chr16	14755749	+
In-frame	ENST00000305921	ENST00000245544		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
In-frame	ENST00000305921	ENST00000541827		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
In-frame	ENST00000305921	ENST00000579324		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
5CDS-3UTR	ENST00000305921	ENST00000449421		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000305921	ENST00000579298		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000305921	ENST00000447371		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000305921	ENST00000540768		TCGA	RV	LGG	TCGA-HT-7479-01A	PPM1D	chr17	58725443	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000283228	ENST00000340652		TCGA	RV	LGG	TCGA-DU-A5TY-01A	PTPRR	chr12	71050484	-	VWC2	chr7	49951630	+
Frame-shit	ENST00000440835	ENST00000340652		TCGA	RV	LGG	TCGA-DU-A5TY-01A	PTPRR	chr12	71050484	-	VWC2	chr7	49951630	+
5UTR-3CDS	ENST00000537619	ENST00000340652		TCGA	RV	LGG	TCGA-DU-A5TY-01A	PTPRR	chr12	71050484	-	VWC2	chr7	49951630	+
Frame-shit	ENST00000378778	ENST00000340652		TCGA	RV	LGG	TCGA-DU-A5TY-01A	PTPRR	chr12	71050484	-	VWC2	chr7	49951630	+
Frame-shit	ENST00000342084	ENST00000340652		TCGA	RV	LGG	TCGA-DU-A5TY-01A	PTPRR	chr12	71050484	-	VWC2	chr7	49951630	+
Frame-shit	ENST00000549308	ENST00000340652		TCGA	RV	LGG	TCGA-DU-A5TY-01A	PTPRR	chr12	71050484	-	VWC2	chr7	49951630	+
intron-3CDS	ENST00000331110	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-3CDS	ENST00000331110	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000331110	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000331110	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000331110	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000331110	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000331110	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000348120	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000348120	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000348120	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000348120	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000348120	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000348120	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000348120	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366563	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366563	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366563	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366563	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366563	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366563	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366563	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366564	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366564	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366564	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366564	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366564	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366564	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366564	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366565	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366565	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366565	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366565	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366565	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366565	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366565	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-3CDS	ENST00000446183	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-3CDS	ENST00000446183	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000446183	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000446183	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000446183	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000446183	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
intron-intron	ENST00000446183	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366562	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000366562	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366562	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366562	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366562	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366562	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000366562	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000401882	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000401882	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000401882	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000401882	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000401882	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000401882	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000401882	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000407727	ENST00000539993		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
Frame-shit	ENST00000407727	ENST00000518698		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000407727	ENST00000349492		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000407727	ENST00000523686		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000407727	ENST00000348340		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000407727	ENST00000337103		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
5CDS-intron	ENST00000407727	ENST00000325233		TCGA	RV	LGG	TCGA-FG-6689-01A	RGS7	chr1	241518999	-	C8orf34	chr8	69380927	+
In-frame	ENST00000325954	ENST00000536742		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
In-frame	ENST00000325954	ENST00000327554		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
In-frame	ENST00000325954	ENST00000539847		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
5CDS-3UTR	ENST00000325954	ENST00000546345		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
In-frame	ENST00000413266	ENST00000536742		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
In-frame	ENST00000413266	ENST00000327554		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
In-frame	ENST00000413266	ENST00000539847		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
5CDS-3UTR	ENST00000413266	ENST00000546345		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
intron-3CDS	ENST00000542701	ENST00000536742		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
intron-3CDS	ENST00000542701	ENST00000327554		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
intron-3CDS	ENST00000542701	ENST00000539847		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
intron-3UTR	ENST00000542701	ENST00000546345		TCGA	RV	LGG	TCGA-S9-A6WL-01A	RNF10	chr12	120984404	+	CCDC60	chr12	119866488	+
5CDS-5UTR	ENST00000292363	ENST00000395808		TCGA	RV	LGG	TCGA-FG-A710-01A	RNF126	chr19	663047	-	MED16	chr19	891149	-
5CDS-intron	ENST00000292363	ENST00000589119		TCGA	RV	LGG	TCGA-FG-A710-01A	RNF126	chr19	663047	-	MED16	chr19	891149	-
5CDS-5UTR	ENST00000292363	ENST00000312090		TCGA	RV	LGG	TCGA-FG-A710-01A	RNF126	chr19	663047	-	MED16	chr19	891149	-
5CDS-5UTR	ENST00000292363	ENST00000269814		TCGA	RV	LGG	TCGA-FG-A710-01A	RNF126	chr19	663047	-	MED16	chr19	891149	-
5CDS-5UTR	ENST00000292363	ENST00000325464		TCGA	RV	LGG	TCGA-FG-A710-01A	RNF126	chr19	663047	-	MED16	chr19	891149	-
5CDS-5UTR	ENST00000292363	ENST00000606828		TCGA	RV	LGG	TCGA-FG-A710-01A	RNF126	chr19	663047	-	MED16	chr19	891149	-
Frame-shit	ENST00000361972	ENST00000361475		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000361972	ENST00000536701		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
5CDS-intron	ENST00000361972	ENST00000536724		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000397167	ENST00000361475		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000397167	ENST00000536701		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
5CDS-intron	ENST00000397167	ENST00000536724		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000379713	ENST00000361475		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000379713	ENST00000536701		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
5CDS-intron	ENST00000379713	ENST00000536724		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000379711	ENST00000361475		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000379711	ENST00000536701		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
5CDS-intron	ENST00000379711	ENST00000536724		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000397160	ENST00000361475		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
Frame-shit	ENST00000397160	ENST00000536701		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
5CDS-intron	ENST00000397160	ENST00000536724		TCGA	RV	LGG	TCGA-DU-5871-01A	SFMBT2	chr10	7409611	-	TGM2	chr20	36790001	-
In-frame	ENST00000375835	ENST00000513293		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
Frame-shit	ENST00000375835	ENST00000495827		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
5CDS-intron	ENST00000375835	ENST00000488436		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
5UTR-3CDS	ENST00000375830	ENST00000513293		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
5UTR-3CDS	ENST00000375830	ENST00000495827		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
5UTR-intron	ENST00000375830	ENST00000488436		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000375831	ENST00000513293		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000375831	ENST00000495827		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
intron-intron	ENST00000375831	ENST00000488436		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SHC3	chr9	91792902	-	PTPLAD2	chr9	21029397	-
In-frame	ENST00000272313	ENST00000264260		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
In-frame	ENST00000272313	ENST00000409369		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
In-frame	ENST00000407823	ENST00000264260		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
In-frame	ENST00000407823	ENST00000409369		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
In-frame	ENST00000345102	ENST00000264260		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
In-frame	ENST00000345102	ENST00000409369		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
intron-3CDS	ENST00000477749	ENST00000264260		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
intron-3CDS	ENST00000477749	ENST00000409369		TCGA	RV	LGG	TCGA-DU-6397-02A	SMEK2	chr2	55785911	-	IL18RAP	chr2	103053672	+
5CDS-5UTR	ENST00000565975	ENST00000535577		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000565975	ENST00000426488		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000565975	ENST00000538906		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000565975	ENST00000394983		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000565975	ENST00000300849		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000565975	ENST00000539836		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000565975	ENST00000417110		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000565975	ENST00000564456		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000311008	ENST00000535577		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000311008	ENST00000426488		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000311008	ENST00000538906		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000311008	ENST00000394983		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000311008	ENST00000300849		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000311008	ENST00000539836		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000311008	ENST00000417110		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000311008	ENST00000564456		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000323081	ENST00000535577		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000323081	ENST00000426488		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000323081	ENST00000538906		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000323081	ENST00000394983		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000323081	ENST00000300849		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000323081	ENST00000539836		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000323081	ENST00000417110		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000323081	ENST00000564456		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000334536	ENST00000535577		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000334536	ENST00000426488		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000334536	ENST00000538906		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000334536	ENST00000394983		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000334536	ENST00000300849		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000334536	ENST00000539836		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000334536	ENST00000417110		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000334536	ENST00000564456		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000352260	ENST00000535577		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000352260	ENST00000426488		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000352260	ENST00000538906		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000352260	ENST00000394983		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000352260	ENST00000300849		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-5UTR	ENST00000352260	ENST00000539836		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000352260	ENST00000417110		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000352260	ENST00000564456		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-5UTR	ENST00000561868	ENST00000535577		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-5UTR	ENST00000561868	ENST00000426488		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-5UTR	ENST00000561868	ENST00000538906		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-5UTR	ENST00000561868	ENST00000394983		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-5UTR	ENST00000561868	ENST00000300849		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-5UTR	ENST00000561868	ENST00000539836		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-intron	ENST00000561868	ENST00000417110		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
intron-intron	ENST00000561868	ENST00000564456		TCGA	RV	LGG	TCGA-HT-7689-01A	SPNS1	chr16	28989365	+	ZNF668	chr16	31075802	-
5CDS-intron	ENST00000356388	ENST00000542979		TCGA	RV	LGG	TCGA-DB-5277-01A	SPRED2	chr2	65659096	-	NAPG	chr18	10530767	+
5CDS-intron	ENST00000356388	ENST00000322897		TCGA	RV	LGG	TCGA-DB-5277-01A	SPRED2	chr2	65659096	-	NAPG	chr18	10530767	+
intron-intron	ENST00000443619	ENST00000542979		TCGA	RV	LGG	TCGA-DB-5277-01A	SPRED2	chr2	65659096	-	NAPG	chr18	10530767	+
intron-intron	ENST00000443619	ENST00000322897		TCGA	RV	LGG	TCGA-DB-5277-01A	SPRED2	chr2	65659096	-	NAPG	chr18	10530767	+
intron-intron	ENST00000474228	ENST00000542979		TCGA	RV	LGG	TCGA-DB-5277-01A	SPRED2	chr2	65659096	-	NAPG	chr18	10530767	+
intron-intron	ENST00000474228	ENST00000322897		TCGA	RV	LGG	TCGA-DB-5277-01A	SPRED2	chr2	65659096	-	NAPG	chr18	10530767	+
intron-3CDS	ENST00000598155	ENST00000593829		TCGA	RV	LGG	TCGA-E1-A7YH-01A	SYMPK	chr19	46366316	-	LSM4	chr19	18426875	-
intron-intron	ENST00000598155	ENST00000252816		TCGA	RV	LGG	TCGA-E1-A7YH-01A	SYMPK	chr19	46366316	-	LSM4	chr19	18426875	-
5UTR-3CDS	ENST00000245934	ENST00000593829		TCGA	RV	LGG	TCGA-E1-A7YH-01A	SYMPK	chr19	46366316	-	LSM4	chr19	18426875	-
5UTR-intron	ENST00000245934	ENST00000252816		TCGA	RV	LGG	TCGA-E1-A7YH-01A	SYMPK	chr19	46366316	-	LSM4	chr19	18426875	-
intron-3CDS	ENST00000372978	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
3UTR-3CDS	ENST00000494547	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
Frame-shit	ENST00000456846	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
3UTR-3CDS	ENST00000372982	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000472818	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
Frame-shit	ENST00000372977	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000482926	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
Frame-shit	ENST00000465926	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000482432	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-01A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000372978	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
3UTR-3CDS	ENST00000494547	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
Frame-shit	ENST00000456846	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
3UTR-3CDS	ENST00000372982	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000472818	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
Frame-shit	ENST00000372977	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000482926	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
Frame-shit	ENST00000465926	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
intron-3CDS	ENST00000482432	ENST00000264828		TCGA	RV	LGG	TCGA-TM-A7CF-02A	TAF8	chr6	42044977	+	COL5A3	chr19	10116907	-
5CDS-5UTR	ENST00000422113	ENST00000535228		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
5CDS-5UTR	ENST00000422113	ENST00000328957		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
5CDS-intron	ENST00000422113	ENST00000397325		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
5CDS-intron	ENST00000422113	ENST00000541995		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
5CDS-intron	ENST00000422113	ENST00000535208		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
intron-5UTR	ENST00000389441	ENST00000535228		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
intron-5UTR	ENST00000389441	ENST00000328957		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
intron-intron	ENST00000389441	ENST00000397325		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
intron-intron	ENST00000389441	ENST00000541995		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
intron-intron	ENST00000389441	ENST00000535208		TCGA	RV	LGG	TCGA-DU-8167-01A	TMEM132D	chr12	130015604	-	GALNT9	chr12	132824580	-
In-frame	ENST00000249700	ENST00000569673		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
In-frame	ENST00000249700	ENST00000379822		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000249700	ENST00000558834		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
In-frame	ENST00000539962	ENST00000569673		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
In-frame	ENST00000539962	ENST00000379822		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000539962	ENST00000558834		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
intron-3CDS	ENST00000435126	ENST00000569673		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
intron-3CDS	ENST00000435126	ENST00000379822		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
intron-intron	ENST00000435126	ENST00000558834		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TMOD2	chr15	52075025	+	C15orf59	chr15	74032983	-
Frame-shit	ENST00000232607	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
5CDS-intron	ENST00000232607	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
Frame-shit	ENST00000413078	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
5CDS-intron	ENST00000413078	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
Frame-shit	ENST00000538242	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
5CDS-intron	ENST00000538242	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
Frame-shit	ENST00000536109	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
5CDS-intron	ENST00000536109	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
3UTR-3CDS	ENST00000498715	ENST00000288221		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
3UTR-intron	ENST00000498715	ENST00000486496		TCGA	RV	LGG	TCGA-S9-A7J0-01A	UMPS	chr3	124457086	+	ERC2	chr3	56053059	-
In-frame	ENST00000553891	ENST00000443035		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
In-frame	ENST00000553891	ENST00000431932		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
5CDS-intron	ENST00000553891	ENST00000567323		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
In-frame	ENST00000318876	ENST00000443035		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
In-frame	ENST00000318876	ENST00000431932		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
5CDS-intron	ENST00000318876	ENST00000567323		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
In-frame	ENST00000556143	ENST00000443035		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
In-frame	ENST00000556143	ENST00000431932		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
5CDS-intron	ENST00000556143	ENST00000567323		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-3CDS	ENST00000394207	ENST00000443035		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-3CDS	ENST00000394207	ENST00000431932		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-intron	ENST00000394207	ENST00000567323		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-3CDS	ENST00000555072	ENST00000443035		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-3CDS	ENST00000555072	ENST00000431932		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-intron	ENST00000555072	ENST00000567323		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-3CDS	ENST00000554145	ENST00000443035		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-3CDS	ENST00000554145	ENST00000431932		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
intron-intron	ENST00000554145	ENST00000567323		TCGA	RV	LGG	TCGA-DU-A7TD-01A	ZFYVE1	chr14	73459851	-	DENND4A	chr15	65998562	-
Frame-shit	ENST00000374618	ENST00000545260		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000545693		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000350537		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000346874		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000374789		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000374790		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000374794		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000374618	ENST00000374788		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-5UTR	ENST00000374618	ENST00000466092		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000374618	ENST00000374776		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000374618	ENST00000340077		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000374618	ENST00000544292		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000374618	ENST00000374773		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000374618	ENST00000374768		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000545260		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000545693		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000350537		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000346874		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000374789		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000374790		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000374794		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000432900	ENST00000374788		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-5UTR	ENST00000432900	ENST00000466092		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000432900	ENST00000374776		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000432900	ENST00000340077		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000432900	ENST00000544292		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000432900	ENST00000374773		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000432900	ENST00000374768		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000545260		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000545693		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000350537		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000346874		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000374789		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000374790		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000374794		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000458705	ENST00000374788		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-5UTR	ENST00000458705	ENST00000466092		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000458705	ENST00000374776		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000458705	ENST00000340077		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000458705	ENST00000544292		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000458705	ENST00000374773		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000458705	ENST00000374768		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000545260		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000545693		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000350537		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000346874		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000374789		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000374790		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000374794		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000469037	ENST00000374788		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-5UTR	ENST00000469037	ENST00000466092		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000469037	ENST00000374776		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000469037	ENST00000340077		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000469037	ENST00000544292		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000469037	ENST00000374773		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000469037	ENST00000374768		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000545260		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000545693		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000350537		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000346874		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000374789		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000374790		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000374794		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-3CDS	ENST00000476504	ENST00000374788		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-5UTR	ENST00000476504	ENST00000466092		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-intron	ENST00000476504	ENST00000374776		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-intron	ENST00000476504	ENST00000340077		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-intron	ENST00000476504	ENST00000544292		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-intron	ENST00000476504	ENST00000374773		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
3UTR-intron	ENST00000476504	ENST00000374768		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000545260		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000545693		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000350537		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000346874		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000374789		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000374790		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000374794		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
Frame-shit	ENST00000307441	ENST00000374788		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-5UTR	ENST00000307441	ENST00000466092		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000307441	ENST00000374776		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000307441	ENST00000340077		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000307441	ENST00000544292		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000307441	ENST00000374773		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
5CDS-intron	ENST00000307441	ENST00000374768		TCGA	RV	LGG	TCGA-HT-7690-01A	ZNF33A	chr10	38306314	+	PARD3	chr10	34558827	-
intron-3UTR	ENST00000596528	ENST00000591727		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000596528	ENST00000339133		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000596528	ENST00000397555		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000599743	ENST00000591727		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000599743	ENST00000339133		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000599743	ENST00000397555		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000300619	ENST00000591727		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000300619	ENST00000339133		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000300619	ENST00000397555		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000397082	ENST00000591727		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000397082	ENST00000339133		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000397082	ENST00000397555		TCGA	RV	LGG	TCGA-S9-A7IZ-01A	ZNF91	chr19	23578127	-	NANOS3	chr19	13991256	+
5UTR-3CDS	ENST00000268251	ENST00000396368		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
5UTR-3CDS	ENST00000268251	ENST00000540441		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
5UTR-3CDS	ENST00000268251	ENST00000344181		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
5UTR-3CDS	ENST00000268251	ENST00000551742		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
5UTR-3CDS	ENST00000268251	ENST00000602337		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
5UTR-3CDS	ENST00000268251	ENST00000548025		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
5UTR-intron	ENST00000268251	ENST00000547936		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000396600	ENST00000396368		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000396600	ENST00000540441		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000396600	ENST00000344181		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000396600	ENST00000551742		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000396600	ENST00000602337		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000396600	ENST00000548025		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-intron	ENST00000396600	ENST00000547936		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000563215	ENST00000396368		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000563215	ENST00000540441		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000563215	ENST00000344181		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000563215	ENST00000551742		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000563215	ENST00000602337		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000563215	ENST00000548025		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-intron	ENST00000563215	ENST00000547936		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000567812	ENST00000396368		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000567812	ENST00000540441		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000567812	ENST00000344181		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000567812	ENST00000551742		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000567812	ENST00000602337		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000567812	ENST00000548025		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-intron	ENST00000567812	ENST00000547936		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000425191	ENST00000396368		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000425191	ENST00000540441		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000425191	ENST00000344181		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000425191	ENST00000551742		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000425191	ENST00000602337		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000425191	ENST00000548025		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-intron	ENST00000425191	ENST00000547936		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000569156	ENST00000396368		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000569156	ENST00000540441		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000569156	ENST00000344181		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000569156	ENST00000551742		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000569156	ENST00000602337		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-3CDS	ENST00000569156	ENST00000548025		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
intron-intron	ENST00000569156	ENST00000547936		TCGA	RV	LGG	TCGA-CS-5397-01A	ABAT	chr16	8768568	+	KIAA0430	chr16	15706634	-
In-frame	ENST00000326195	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
In-frame	ENST00000376545	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000396515	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000457111	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000452530	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000416932	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000470464	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000419893	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000448939	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000457970	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000475528	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000457078	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000412443	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000546690	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000421608	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000486105	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000383588	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000383587	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000400609	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000485585	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000426219	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000421042	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000552867	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000454094	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000494413	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000423247	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000420257	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000456791	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
intron-3CDS	ENST00000495194	ENST00000264554		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ABCF1	chr6	30554488	+	SHC2	chr19	440932	-
5CDS-5UTR	ENST00000360265	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000360265	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000360265	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000360265	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000358461	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000358461	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000358461	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000358461	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000420658	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000420658	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000420658	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000420658	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-5UTR	ENST00000382543	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000382543	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000382543	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5CDS-intron	ENST00000382543	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-5UTR	ENST00000513842	ENST00000434459		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-intron	ENST00000513842	ENST00000477661		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-intron	ENST00000513842	ENST00000380872		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-intron	ENST00000513842	ENST00000380859		TCGA	RV	LGG	TCGA-DH-A669-02A	AFAP1	chr4	7774547	-	AKR1C1	chr10	4975429	+
5UTR-3CDS	ENST00000483209	ENST00000264122		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000483209	ENST00000407712		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000483209	ENST00000394027		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000483209	ENST00000403724		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000483209	ENST00000405772		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000483209	ENST00000545639		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-3CDS	ENST00000467604	ENST00000264122		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000467604	ENST00000407712		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000467604	ENST00000394027		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000467604	ENST00000403724		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000467604	ENST00000405772		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000467604	ENST00000545639		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
intron-3CDS	ENST00000471675	ENST00000264122		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
intron-intron	ENST00000471675	ENST00000407712		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
intron-intron	ENST00000471675	ENST00000394027		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
intron-intron	ENST00000471675	ENST00000403724		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
intron-intron	ENST00000471675	ENST00000405772		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
intron-intron	ENST00000471675	ENST00000545639		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-3CDS	ENST00000359213	ENST00000264122		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000359213	ENST00000407712		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000359213	ENST00000394027		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000359213	ENST00000403724		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000359213	ENST00000405772		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000359213	ENST00000545639		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-3CDS	ENST00000393765	ENST00000264122		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000393765	ENST00000407712		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000393765	ENST00000394027		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000393765	ENST00000403724		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000393765	ENST00000405772		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000393765	ENST00000545639		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-3CDS	ENST00000460321	ENST00000264122		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000460321	ENST00000407712		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000460321	ENST00000394027		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000460321	ENST00000403724		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000460321	ENST00000405772		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
5UTR-intron	ENST00000460321	ENST00000545639		TCGA	RV	LGG	TCGA-WY-A85C-01A	B4GALT4	chr3	118955700	-	CBLB	chr3	105572508	-
Frame-shit	ENST00000307404	ENST00000430223		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
Frame-shit	ENST00000307404	ENST00000341166		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
5CDS-5UTR	ENST00000307404	ENST00000520545		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
5UTR-3CDS	ENST00000529231	ENST00000430223		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
5UTR-3CDS	ENST00000529231	ENST00000341166		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
5UTR-5UTR	ENST00000529231	ENST00000520545		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
intron-3CDS	ENST00000525016	ENST00000430223		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
intron-3CDS	ENST00000525016	ENST00000341166		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
intron-5UTR	ENST00000525016	ENST00000520545		TCGA	RV	LGG	TCGA-HT-7475-01A	BOP1	chr8	145514954	-	NIPAL2	chr8	99234828	-
In-frame	ENST00000262947	ENST00000324675		TCGA	RV	LGG	TCGA-TM-A7CF-01A	C19orf10	chr19	4659943	-	FAM187B	chr19	35716115	-
intron-3CDS	ENST00000599630	ENST00000324675		TCGA	RV	LGG	TCGA-TM-A7CF-01A	C19orf10	chr19	4659943	-	FAM187B	chr19	35716115	-
In-frame	ENST00000377795	ENST00000404984		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
In-frame	ENST00000377795	ENST00000402050		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
In-frame	ENST00000377795	ENST00000438376		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
In-frame	ENST00000377795	ENST00000325979		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000377795	ENST00000497572		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000353334	ENST00000404984		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000353334	ENST00000402050		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000353334	ENST00000438376		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000353334	ENST00000325979		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-intron	ENST00000353334	ENST00000497572		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000524315	ENST00000404984		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000524315	ENST00000402050		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000524315	ENST00000438376		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000524315	ENST00000325979		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-intron	ENST00000524315	ENST00000497572		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000009530	ENST00000404984		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000009530	ENST00000402050		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000009530	ENST00000438376		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000009530	ENST00000325979		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
intron-intron	ENST00000009530	ENST00000497572		TCGA	RV	LGG	TCGA-HT-7854-01A	CD74	chr5	149781200	-	IQCE	chr7	2641075	+
In-frame	ENST00000360822	ENST00000371561		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000360822	ENST00000315048		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000471122		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000350902		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000371553		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000371546		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000371559		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000371555		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000371550		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360822	ENST00000371560		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000359309	ENST00000371561		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000359309	ENST00000315048		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000471122		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000350902		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000371553		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000371546		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000371559		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000371555		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000371550		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000359309	ENST00000371560		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000349780	ENST00000371561		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000349780	ENST00000315048		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000471122		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000350902		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000371553		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000371546		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000371559		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000371555		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000371550		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000349780	ENST00000371560		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000360190	ENST00000371561		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
In-frame	ENST00000360190	ENST00000315048		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000471122		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000350902		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000371553		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000371546		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000371559		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000371555		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000371550		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000360190	ENST00000371560		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000480467	ENST00000371561		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000480467	ENST00000315048		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000471122		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000350902		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000371553		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000371546		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000371559		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000371555		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000371550		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000480467	ENST00000371560		TCGA	RV	LGG	TCGA-HT-7873-01B	CDK5RAP2	chr9	123280705	-	GRIN1	chr9	140036465	+
Frame-shit	ENST00000360822	ENST00000426959		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
In-frame	ENST00000360822	ENST00000373930		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
Frame-shit	ENST00000359309	ENST00000426959		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
In-frame	ENST00000359309	ENST00000373930		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
Frame-shit	ENST00000349780	ENST00000426959		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
In-frame	ENST00000349780	ENST00000373930		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
Frame-shit	ENST00000360190	ENST00000426959		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
In-frame	ENST00000360190	ENST00000373930		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
intron-3CDS	ENST00000480467	ENST00000426959		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
intron-3CDS	ENST00000480467	ENST00000373930		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	CDK5RAP2	chr9	123330599	-	MEGF9	chr9	123367919	-
Frame-shit	ENST00000003084	ENST00000284629		TCGA	RV	LGG	TCGA-HT-A61C-01A	CFTR	chr7	117251862	+	ASZ1	chr7	117066989	-
Frame-shit	ENST00000454343	ENST00000284629		TCGA	RV	LGG	TCGA-HT-A61C-01A	CFTR	chr7	117251862	+	ASZ1	chr7	117066989	-
intron-3CDS	ENST00000608965	ENST00000284629		TCGA	RV	LGG	TCGA-HT-A61C-01A	CFTR	chr7	117251862	+	ASZ1	chr7	117066989	-
5CDS-5UTR	ENST00000263097	ENST00000332235		TCGA	RV	LGG	TCGA-DB-A4XH-01A	CNN2	chr19	1031191	+	C2CD4C	chr19	408401	-
3UTR-5UTR	ENST00000606983	ENST00000332235		TCGA	RV	LGG	TCGA-DB-A4XH-01A	CNN2	chr19	1031191	+	C2CD4C	chr19	408401	-
5CDS-5UTR	ENST00000348419	ENST00000332235		TCGA	RV	LGG	TCGA-DB-A4XH-01A	CNN2	chr19	1031191	+	C2CD4C	chr19	408401	-
5CDS-5UTR	ENST00000565096	ENST00000332235		TCGA	RV	LGG	TCGA-DB-A4XH-01A	CNN2	chr19	1031191	+	C2CD4C	chr19	408401	-
5CDS-5UTR	ENST00000562958	ENST00000332235		TCGA	RV	LGG	TCGA-DB-A4XH-01A	CNN2	chr19	1031191	+	C2CD4C	chr19	408401	-
In-frame	ENST00000355827	ENST00000360256		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000355827	ENST00000330287		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
5CDS-intron	ENST00000355827	ENST00000483822		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000373054	ENST00000360256		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000373054	ENST00000330287		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
5CDS-intron	ENST00000373054	ENST00000483822		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
In-frame	ENST00000373061	ENST00000360256		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000373061	ENST00000330287		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
5CDS-intron	ENST00000373061	ENST00000483822		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
In-frame	ENST00000373049	ENST00000360256		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000373049	ENST00000330287		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
5CDS-intron	ENST00000373049	ENST00000483822		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
In-frame	ENST00000324765	ENST00000360256		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000324765	ENST00000330287		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
5CDS-intron	ENST00000324765	ENST00000483822		TCGA	RV	LGG	TCGA-HT-7470-01A	DIAPH2	chrX	96013257	+	F8	chrX	154066027	-
Frame-shit	ENST00000330899	ENST00000506823		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
Frame-shit	ENST00000330899	ENST00000508122		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000330899	ENST00000457021		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000330899	ENST00000511251		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
Frame-shit	ENST00000544625	ENST00000506823		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
Frame-shit	ENST00000544625	ENST00000508122		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000544625	ENST00000457021		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
5CDS-intron	ENST00000544625	ENST00000511251		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
intron-3CDS	ENST00000495015	ENST00000506823		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
intron-3CDS	ENST00000495015	ENST00000508122		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
intron-intron	ENST00000495015	ENST00000457021		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
intron-intron	ENST00000495015	ENST00000511251		TCGA	RV	LGG	TCGA-HT-7477-01B	DNAJA1	chr9	33030665	+	GALNTL6	chr4	173930329	+
Frame-shit	ENST00000556509	ENST00000393452		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000556509	ENST00000393454		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000556509	ENST00000335725		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-3UTR	ENST00000556509	ENST00000555565		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-5UTR	ENST00000556509	ENST00000357382		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-5UTR	ENST00000556509	ENST00000555880		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
intron-3CDS	ENST00000557704	ENST00000393452		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
intron-3CDS	ENST00000557704	ENST00000393454		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
intron-3CDS	ENST00000557704	ENST00000335725		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
intron-3UTR	ENST00000557704	ENST00000555565		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
intron-5UTR	ENST00000557704	ENST00000357382		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
intron-5UTR	ENST00000557704	ENST00000555880		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000541685	ENST00000393452		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000541685	ENST00000393454		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000541685	ENST00000335725		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-3UTR	ENST00000541685	ENST00000555565		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-5UTR	ENST00000541685	ENST00000357382		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-5UTR	ENST00000541685	ENST00000555880		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000546183	ENST00000393452		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000546183	ENST00000393454		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
Frame-shit	ENST00000546183	ENST00000335725		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-3UTR	ENST00000546183	ENST00000555565		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-5UTR	ENST00000546183	ENST00000357382		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-5UTR	ENST00000546183	ENST00000555880		TCGA	RV	LGG	TCGA-P5-A77W-01A	DPF3	chr14	73219972	-	TDP1	chr14	90437519	+
5CDS-intron	ENST00000526148	ENST00000267101		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000526148	ENST00000450146		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000526148	ENST00000415288		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000526148	ENST00000553131		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000526148	ENST00000411731		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000526148	ENST00000549832		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000525681	ENST00000267101		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000525681	ENST00000450146		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000525681	ENST00000415288		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000525681	ENST00000553131		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000525681	ENST00000411731		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000525681	ENST00000549832		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000339995	ENST00000267101		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000339995	ENST00000450146		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000339995	ENST00000415288		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000339995	ENST00000553131		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000339995	ENST00000411731		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000339995	ENST00000549832		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000396525	ENST00000267101		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000396525	ENST00000450146		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000396525	ENST00000415288		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000396525	ENST00000553131		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000396525	ENST00000411731		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000396525	ENST00000549832		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000525995	ENST00000267101		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000525995	ENST00000450146		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000525995	ENST00000415288		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000525995	ENST00000553131		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000525995	ENST00000411731		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000525995	ENST00000549832		TCGA	RV	LGG	TCGA-E1-5307-01A	EIF4G2	chr11	10818601	-	ERBB3	chr12	56492035	+
In-frame	ENST00000263253	ENST00000301923		TCGA	RV	LGG	TCGA-HT-7480-01A	EP300	chr22	41546202	+	TNRC6B	chr22	40681649	+
In-frame	ENST00000263253	ENST00000402203		TCGA	RV	LGG	TCGA-HT-7480-01A	EP300	chr22	41546202	+	TNRC6B	chr22	40681649	+
In-frame	ENST00000263253	ENST00000454349		TCGA	RV	LGG	TCGA-HT-7480-01A	EP300	chr22	41546202	+	TNRC6B	chr22	40681649	+
In-frame	ENST00000263253	ENST00000335727		TCGA	RV	LGG	TCGA-HT-7480-01A	EP300	chr22	41546202	+	TNRC6B	chr22	40681649	+
5CDS-3UTR	ENST00000263253	ENST00000497559		TCGA	RV	LGG	TCGA-HT-7480-01A	EP300	chr22	41546202	+	TNRC6B	chr22	40681649	+
5CDS-5UTR	ENST00000503581	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
5CDS-5UTR	ENST00000370621	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
5CDS-5UTR	ENST00000370616	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
intron-5UTR	ENST00000393380	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
intron-5UTR	ENST00000342421	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
intron-5UTR	ENST00000370618	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
intron-5UTR	ENST00000486069	ENST00000367568		TCGA	RV	LGG	TCGA-TM-A7CF-02A	EYS	chr6	65596590	-	STX11	chr6	144507760	+
5UTR-3CDS	ENST00000281708	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000281708	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000281708	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000603548	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000603548	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000603548	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000604872	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000604872	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000604872	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000296555	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000296555	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000296555	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000263981	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000263981	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000263981	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000393956	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000393956	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000393956	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000603841	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000603841	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000603841	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000604095	ENST00000358867		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000604095	ENST00000534341		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
5UTR-3CDS	ENST00000604095	ENST00000393375		TCGA	RV	LGG	TCGA-CS-6666-01A	FBXW7	chr4	153456093	-	TMEM126B	chr11	85345130	+
intron-3CDS	ENST00000392945	ENST00000359428		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
intron-3CDS	ENST00000392945	ENST00000411637		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
intron-3CDS	ENST00000392945	ENST00000451030		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
intron-intron	ENST00000392945	ENST00000483497		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
intron-intron	ENST00000392945	ENST00000465486		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000440944	ENST00000359428		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000440944	ENST00000411637		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000440944	ENST00000451030		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000440944	ENST00000483497		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000440944	ENST00000465486		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000429455	ENST00000359428		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000429455	ENST00000411637		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000429455	ENST00000451030		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000429455	ENST00000483497		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000429455	ENST00000465486		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000392944	ENST00000359428		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000392944	ENST00000411637		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
In-frame	ENST00000392944	ENST00000451030		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000392944	ENST00000483497		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000392944	ENST00000465486		TCGA	RV	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139251002	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000380406	ENST00000484427		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000380406	ENST00000371764		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000380405	ENST00000484427		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000380405	ENST00000371764		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000320027	ENST00000484427		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000320027	ENST00000371764		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
intron-intron	ENST00000445273	ENST00000484427		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
intron-intron	ENST00000445273	ENST00000371764		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
intron-intron	ENST00000429785	ENST00000484427		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
intron-intron	ENST00000429785	ENST00000371764		TCGA	RV	LGG	TCGA-HT-8010-01A	HSPH1	chr13	31710765	-	DDX27	chr20	47849303	+
Frame-shit	ENST00000371741	ENST00000407775		TCGA	RV	LGG	TCGA-TM-A84H-01A	KCNB1	chr20	48098451	-	ZFPM2	chr8	106431372	+
5CDS-5UTR	ENST00000371741	ENST00000520492		TCGA	RV	LGG	TCGA-TM-A84H-01A	KCNB1	chr20	48098451	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000371741	ENST00000517361		TCGA	RV	LGG	TCGA-TM-A84H-01A	KCNB1	chr20	48098451	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000371741	ENST00000522296		TCGA	RV	LGG	TCGA-TM-A84H-01A	KCNB1	chr20	48098451	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000371741	ENST00000378472		TCGA	RV	LGG	TCGA-TM-A84H-01A	KCNB1	chr20	48098451	-	ZFPM2	chr8	106431372	+
In-frame	ENST00000159111	ENST00000301280		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
5CDS-intron	ENST00000159111	ENST00000587368		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
In-frame	ENST00000381759	ENST00000301280		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
5CDS-intron	ENST00000381759	ENST00000587368		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
In-frame	ENST00000536461	ENST00000301280		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
5CDS-intron	ENST00000536461	ENST00000587368		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
intron-3CDS	ENST00000592175	ENST00000301280		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
intron-intron	ENST00000592175	ENST00000587368		TCGA	RV	LGG	TCGA-DU-8163-01A	KDM4B	chr19	5082515	+	CHAF1A	chr19	4418017	+
Frame-shit	ENST00000288135	ENST00000554144		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
Frame-shit	ENST00000288135	ENST00000420433		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000556376		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000381260		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000337881		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000288135	ENST00000605395		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000288135	ENST00000508121		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000503639		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000553379		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000381255		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000317745		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000555760		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000288135	ENST00000556614		TCGA	RV	LGG	TCGA-S9-A89Z-01A	KIT	chr4	55524248	+	HOPX	chr4	57522178	-
In-frame	ENST00000450485	ENST00000240079		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
In-frame	ENST00000450485	ENST00000545679		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
5CDS-5UTR	ENST00000450485	ENST00000539515		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
In-frame	ENST00000333479	ENST00000240079		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
In-frame	ENST00000333479	ENST00000545679		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
5CDS-5UTR	ENST00000333479	ENST00000539515		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000545065	ENST00000240079		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000545065	ENST00000545679		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-5UTR	ENST00000545065	ENST00000539515		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000537348	ENST00000240079		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000537348	ENST00000545679		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-5UTR	ENST00000537348	ENST00000539515		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000436959	ENST00000240079		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000436959	ENST00000545679		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-5UTR	ENST00000436959	ENST00000539515		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000534995	ENST00000240079		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-3CDS	ENST00000534995	ENST00000545679		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-5UTR	ENST00000534995	ENST00000539515		TCGA	RV	LGG	TCGA-DU-A5TP-01A	KNTC1	chr12	123036243	+	CCDC53	chr12	102433756	-
intron-intron	ENST00000424859	ENST00000322349		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
intron-intron	ENST00000424859	ENST00000547833		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000535008	ENST00000322349		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000535008	ENST00000547833		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
intron-intron	ENST00000401970	ENST00000322349		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
intron-intron	ENST00000401970	ENST00000547833		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
intron-intron	ENST00000543266	ENST00000322349		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
intron-intron	ENST00000543266	ENST00000547833		TCGA	RV	LGG	TCGA-CS-5396-01A	LHFPL3	chr7	104549001	+	EEA1	chr12	93229203	-
Frame-shit	ENST00000404459	ENST00000371996		TCGA	RV	LGG	TCGA-E1-A7YN-01A	LIPN	chr10	90530748	+	MINPP1	chr10	89311839	+
In-frame	ENST00000404459	ENST00000371994		TCGA	RV	LGG	TCGA-E1-A7YN-01A	LIPN	chr10	90530748	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000404459	ENST00000536010		TCGA	RV	LGG	TCGA-E1-A7YN-01A	LIPN	chr10	90530748	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000404459	ENST00000472891		TCGA	RV	LGG	TCGA-E1-A7YN-01A	LIPN	chr10	90530748	+	MINPP1	chr10	89311839	+
5CDS-intron	ENST00000285737	ENST00000468573		TCGA	RV	LGG	TCGA-S9-A89Z-01A	LONP2	chr16	48368269	+	CHRM3	chr1	240070733	+
5CDS-5UTR	ENST00000285737	ENST00000255380		TCGA	RV	LGG	TCGA-S9-A89Z-01A	LONP2	chr16	48368269	+	CHRM3	chr1	240070733	+
5CDS-intron	ENST00000535754	ENST00000468573		TCGA	RV	LGG	TCGA-S9-A89Z-01A	LONP2	chr16	48368269	+	CHRM3	chr1	240070733	+
5CDS-5UTR	ENST00000535754	ENST00000255380		TCGA	RV	LGG	TCGA-S9-A89Z-01A	LONP2	chr16	48368269	+	CHRM3	chr1	240070733	+
intron-intron	ENST00000564259	ENST00000468573		TCGA	RV	LGG	TCGA-S9-A89Z-01A	LONP2	chr16	48368269	+	CHRM3	chr1	240070733	+
intron-5UTR	ENST00000564259	ENST00000255380		TCGA	RV	LGG	TCGA-S9-A89Z-01A	LONP2	chr16	48368269	+	CHRM3	chr1	240070733	+
5UTR-3CDS	ENST00000395169	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395169	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395169	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395169	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395169	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000359221	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000359221	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000359221	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000359221	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000359221	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000361569	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000361569	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000361569	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000361569	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000361569	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395166	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395166	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395166	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395166	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395166	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000449047	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000449047	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000449047	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000449047	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000449047	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395161	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395161	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395161	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395161	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395161	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000513839	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000513839	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000513839	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000513839	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000513839	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395157	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395157	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395157	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395157	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395157	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395160	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395160	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395160	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395160	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395160	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-01A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395169	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395169	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395169	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395169	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395169	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000359221	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000359221	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000359221	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000359221	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000359221	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000361569	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000361569	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000361569	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000361569	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000361569	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395166	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395166	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395166	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395166	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395166	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000449047	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000449047	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000449047	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000449047	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000449047	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395161	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000395161	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395161	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395161	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000395161	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000513839	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-3CDS	ENST00000513839	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000513839	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000513839	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5UTR-intron	ENST00000513839	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395157	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395157	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395157	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395157	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395157	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395160	ENST00000395184		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-3CDS	ENST00000395160	ENST00000503995		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395160	ENST00000506421		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395160	ENST00000395183		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
intron-intron	ENST00000395160	ENST00000264343		TCGA	RV	LGG	TCGA-DH-A669-02A	MAPK10	chr4	87275683	-	ARHGAP24	chr4	86893189	+
5CDS-5UTR	ENST00000449934	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-5UTR	ENST00000449934	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-5UTR	ENST00000449934	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-5UTR	ENST00000449934	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-5UTR	ENST00000449934	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
5CDS-intron	ENST00000449934	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000417899	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000417899	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000417899	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000417899	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000417899	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000417899	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000497496	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000497496	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000497496	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000497496	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000497496	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000497496	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000427477	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000427477	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000427477	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000427477	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000427477	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000427477	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000446505	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000446505	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000446505	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000446505	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000446505	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000446505	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547767	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547767	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547767	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547767	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547767	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547767	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400322	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400322	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400322	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400322	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400322	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400322	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000493320	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000493320	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000493320	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000493320	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000493320	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000493320	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400325	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400325	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400325	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400325	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000400325	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000400325	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547609	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547609	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547609	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547609	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000547609	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000547609	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000420259	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000420259	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000420259	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000420259	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000420259	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000420259	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000468858	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000468858	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000468858	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000468858	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000468858	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000468858	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000418465	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000418465	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000418465	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000418465	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000418465	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000418465	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000432479	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000432479	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000432479	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000432479	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000432479	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000432479	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000552236	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000552236	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000552236	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000552236	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000552236	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000552236	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000438928	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000438928	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000438928	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000438928	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000438928	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000438928	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000486844	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000486844	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000486844	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000486844	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000486844	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000486844	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000415525	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000415525	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000415525	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000415525	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000415525	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000415525	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000414473	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000414473	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000414473	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000414473	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000414473	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000414473	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000546529	ENST00000491161		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000546529	ENST00000376073		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000546529	ENST00000340027		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000546529	ENST00000376072		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-5UTR	ENST00000546529	ENST00000376071		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000497117		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000420556		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000432392		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000457547		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000419728		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000498490		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000433654		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000447248		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000418936		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000420485		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000491762		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000439584		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000415123		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000436623		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000455448		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000459657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000455825		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000435674		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000412603		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000438663		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000495500		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000383478		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000383477		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000383476		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000400241		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000494590		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000430599		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000446756		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000441372		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000453657		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000489751		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000437517		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000436253		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000452296		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
intron-intron	ENST00000546529	ENST00000419086		TCGA	RV	LGG	TCGA-WH-A86K-01A	MICA	chr6	31371479	+	NCR3	chr6	31557903	-
Frame-shit	ENST00000287594	ENST00000565698		TCGA	RV	LGG	TCGA-E1-5304-01A	MPV17L	chr16	15490064	+	XPO6	chr16	28124371	-
Frame-shit	ENST00000287594	ENST00000304658		TCGA	RV	LGG	TCGA-E1-5304-01A	MPV17L	chr16	15490064	+	XPO6	chr16	28124371	-
5CDS-intron	ENST00000287594	ENST00000561488		TCGA	RV	LGG	TCGA-E1-5304-01A	MPV17L	chr16	15490064	+	XPO6	chr16	28124371	-
Frame-shit	ENST00000396385	ENST00000565698		TCGA	RV	LGG	TCGA-E1-5304-01A	MPV17L	chr16	15490064	+	XPO6	chr16	28124371	-
Frame-shit	ENST00000396385	ENST00000304658		TCGA	RV	LGG	TCGA-E1-5304-01A	MPV17L	chr16	15490064	+	XPO6	chr16	28124371	-
5CDS-intron	ENST00000396385	ENST00000561488		TCGA	RV	LGG	TCGA-E1-5304-01A	MPV17L	chr16	15490064	+	XPO6	chr16	28124371	-
In-frame	ENST00000544440	ENST00000326291		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
5CDS-3UTR	ENST00000544440	ENST00000489922		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
In-frame	ENST00000407578	ENST00000326291		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
5CDS-3UTR	ENST00000407578	ENST00000489922		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
Frame-shit	ENST00000357337	ENST00000326291		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
5CDS-3UTR	ENST00000357337	ENST00000489922		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
5UTR-3CDS	ENST00000360084	ENST00000326291		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
5UTR-3UTR	ENST00000360084	ENST00000489922		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
intron-3CDS	ENST00000482517	ENST00000326291		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
intron-3UTR	ENST00000482517	ENST00000489922		TCGA	RV	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73572960	+
3UTR-3CDS	ENST00000578382	ENST00000167462		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000578382	ENST00000375227		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000578382	ENST00000392550		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000578382	ENST00000578363		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000578382	ENST00000577200		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
intron-3CDS	ENST00000583560	ENST00000167462		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
intron-3CDS	ENST00000583560	ENST00000375227		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
intron-3CDS	ENST00000583560	ENST00000392550		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
intron-3CDS	ENST00000583560	ENST00000578363		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
intron-3CDS	ENST00000583560	ENST00000577200		TCGA	RV	LGG	TCGA-QH-A6CV-01A	MYO15B	chr17	73592980	+	LLGL2	chr17	73552127	+
intron-3CDS	ENST00000454872	ENST00000481065		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000454872	ENST00000486257		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000454872	ENST00000383671		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-intron	ENST00000454872	ENST00000496848		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-3CDS	ENST00000473253	ENST00000481065		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000473253	ENST00000486257		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000473253	ENST00000383671		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-intron	ENST00000473253	ENST00000496848		TCGA	RV	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114012847	+
intron-3CDS	ENST00000294868	ENST00000367942		TCGA	RV	LGG	TCGA-DU-6542-01A	NMNAT2	chr1	183387318	-	ATF6	chr1	161748034	+
intron-intron	ENST00000294868	ENST00000476437		TCGA	RV	LGG	TCGA-DU-6542-01A	NMNAT2	chr1	183387318	-	ATF6	chr1	161748034	+
Frame-shit	ENST00000287713	ENST00000367942		TCGA	RV	LGG	TCGA-DU-6542-01A	NMNAT2	chr1	183387318	-	ATF6	chr1	161748034	+
5CDS-intron	ENST00000287713	ENST00000476437		TCGA	RV	LGG	TCGA-DU-6542-01A	NMNAT2	chr1	183387318	-	ATF6	chr1	161748034	+
intron-3CDS	ENST00000473046	ENST00000367942		TCGA	RV	LGG	TCGA-DU-6542-01A	NMNAT2	chr1	183387318	-	ATF6	chr1	161748034	+
intron-intron	ENST00000473046	ENST00000476437		TCGA	RV	LGG	TCGA-DU-6542-01A	NMNAT2	chr1	183387318	-	ATF6	chr1	161748034	+
5CDS-3UTR	ENST00000366898	ENST00000245865		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366898	ENST00000375840		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366898	ENST00000392950		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366898	ENST00000336174		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366898	ENST00000447001		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366898	ENST00000582137		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366898	ENST00000580039		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366898	ENST00000579340		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366897	ENST00000245865		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366897	ENST00000375840		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366897	ENST00000392950		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366897	ENST00000336174		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366897	ENST00000447001		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366897	ENST00000582137		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366897	ENST00000580039		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366897	ENST00000579340		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366896	ENST00000245865		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366896	ENST00000375840		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366896	ENST00000392950		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366896	ENST00000336174		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366896	ENST00000447001		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366896	ENST00000582137		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366896	ENST00000580039		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366896	ENST00000579340		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366894	ENST00000245865		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366894	ENST00000375840		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366894	ENST00000392950		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366894	ENST00000336174		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366894	ENST00000447001		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366894	ENST00000582137		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366894	ENST00000580039		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366894	ENST00000579340		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000338468	ENST00000245865		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000338468	ENST00000375840		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000338468	ENST00000392950		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000338468	ENST00000336174		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000338468	ENST00000447001		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000338468	ENST00000582137		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000338468	ENST00000580039		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000338468	ENST00000579340		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366892	ENST00000245865		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366892	ENST00000375840		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366892	ENST00000392950		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366892	ENST00000336174		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366892	ENST00000447001		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-3UTR	ENST00000366892	ENST00000582137		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366892	ENST00000580039		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-5UTR	ENST00000366892	ENST00000579340		TCGA	RV	LGG	TCGA-DU-5854-01A	PARK2	chr6	161969886	-	STRADA	chr17	61781942	-
5CDS-intron	ENST00000519479	ENST00000264818		TCGA	RV	LGG	TCGA-DU-A6S6-01A	PCDHGB4	chr5	140892546	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000519479	ENST00000524462		TCGA	RV	LGG	TCGA-DU-A6S6-01A	PCDHGB4	chr5	140892546	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000519479	ENST00000525621		TCGA	RV	LGG	TCGA-DU-A6S6-01A	PCDHGB4	chr5	140892546	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000519479	ENST00000529370		TCGA	RV	LGG	TCGA-DU-A6S6-01A	PCDHGB4	chr5	140892546	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000519479	ENST00000529422		TCGA	RV	LGG	TCGA-DU-A6S6-01A	PCDHGB4	chr5	140892546	+	TYK2	chr19	10491352	-
In-frame	ENST00000360472	ENST00000263593		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000360472	ENST00000545756		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000360472	ENST00000525730		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368077	ENST00000263593		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
intron-intron	ENST00000368077	ENST00000545756		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
intron-intron	ENST00000368077	ENST00000525730		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
In-frame	ENST00000368076	ENST00000263593		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000368076	ENST00000545756		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000368076	ENST00000525730		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000488858	ENST00000263593		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
intron-intron	ENST00000488858	ENST00000545756		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
intron-intron	ENST00000488858	ENST00000525730		TCGA	RV	LGG	TCGA-R8-A6MK-01A	PEA15	chr1	160185166	+	SIAE	chr11	124543777	-
In-frame	ENST00000323646	ENST00000321276		TCGA	RV	LGG	TCGA-TM-A84B-01A	PLA2G16	chr11	63357572	-	SGPP2	chr2	223339287	+
Frame-shit	ENST00000415826	ENST00000321276		TCGA	RV	LGG	TCGA-TM-A84B-01A	PLA2G16	chr11	63357572	-	SGPP2	chr2	223339287	+
5UTR-3CDS	ENST00000394613	ENST00000321276		TCGA	RV	LGG	TCGA-TM-A84B-01A	PLA2G16	chr11	63357572	-	SGPP2	chr2	223339287	+
In-frame	ENST00000011619	ENST00000539054		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
In-frame	ENST00000011619	ENST00000379757		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
5CDS-5UTR	ENST00000011619	ENST00000473453		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
intron-3CDS	ENST00000469916	ENST00000539054		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
intron-3CDS	ENST00000469916	ENST00000379757		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
intron-5UTR	ENST00000469916	ENST00000473453		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
intron-3CDS	ENST00000539980	ENST00000539054		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
intron-3CDS	ENST00000539980	ENST00000379757		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
intron-5UTR	ENST00000539980	ENST00000473453		TCGA	RV	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	TXNDC5	chr6	7904956	-
5CDS-5UTR	ENST00000336061	ENST00000338523		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-5UTR	ENST00000336061	ENST00000446848		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-5UTR	ENST00000336061	ENST00000396376		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-intron	ENST00000336061	ENST00000409367		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-intron	ENST00000336061	ENST00000409838		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-intron	ENST00000336061	ENST00000462993		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-5UTR	ENST00000542104	ENST00000338523		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-5UTR	ENST00000542104	ENST00000446848		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-5UTR	ENST00000542104	ENST00000396376		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-intron	ENST00000542104	ENST00000409367		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-intron	ENST00000542104	ENST00000409838		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
5CDS-intron	ENST00000542104	ENST00000462993		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
3UTR-5UTR	ENST00000540088	ENST00000338523		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
3UTR-5UTR	ENST00000540088	ENST00000446848		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
3UTR-5UTR	ENST00000540088	ENST00000396376		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
3UTR-intron	ENST00000540088	ENST00000409367		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
3UTR-intron	ENST00000540088	ENST00000409838		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
3UTR-intron	ENST00000540088	ENST00000462993		TCGA	RV	LGG	TCGA-DU-A5TY-01A	RASSF3	chr12	65004523	+	SNX10	chr7	26386040	+
In-frame	ENST00000368802	ENST00000269373		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
In-frame	ENST00000368802	ENST00000535965		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
In-frame	ENST00000368805	ENST00000269373		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
In-frame	ENST00000368805	ENST00000535965		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
Frame-shit	ENST00000435970	ENST00000269373		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
Frame-shit	ENST00000435970	ENST00000535965		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
In-frame	ENST00000358835	ENST00000269373		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
In-frame	ENST00000358835	ENST00000535965		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
5UTR-3CDS	ENST00000462119	ENST00000269373		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
5UTR-3CDS	ENST00000462119	ENST00000535965		TCGA	RV	LGG	TCGA-CS-4942-01A	REV3L	chr6	111628564	-	FN3KRP	chr17	80684356	+
In-frame	ENST00000361757	ENST00000248228		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000357361		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000334806		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000394122		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000359059		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000327325		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000596363		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000596707		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000597522		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000595496		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000248228		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000357361		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000334806		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000394122		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000359059		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000327325		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000596363		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000596707		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000597522		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000595496		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000248228		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000357361		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000334806		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000394122		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000359059		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000327325		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000596363		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000596707		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000597522		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000595496		TCGA	RV	LGG	TCGA-TM-A7CF-01A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000248228		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000357361		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000334806		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000394122		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000359059		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000327325		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000596363		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000596707		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000597522		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000361757	ENST00000595496		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000248228		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000357361		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000334806		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000394122		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000359059		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000327325		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000596363		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000596707		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000597522		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
In-frame	ENST00000587024	ENST00000595496		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000248228		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000357361		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000334806		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000394122		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000359059		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000327325		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000596363		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000596707		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000597522		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000438103	ENST00000595496		TCGA	RV	LGG	TCGA-TM-A7CF-02A	SBNO2	chr19	1147308	-	CLEC4M	chr19	7830524	+
intron-3CDS	ENST00000558014	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000558014	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000558014	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000537942	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000537942	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000537942	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5UTR-3CDS	ENST00000536845	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5UTR-3CDS	ENST00000536845	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5UTR-intron	ENST00000536845	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5UTR-3CDS	ENST00000558816	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5UTR-3CDS	ENST00000558816	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5UTR-intron	ENST00000558816	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389425	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389425	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000389425	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000355997	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000355997	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000355997	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389433	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389433	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000389433	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389432	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389432	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000389432	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000358066	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000358066	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000358066	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389428	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000389428	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000389428	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000316364	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000316364	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000316364	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000354744	ENST00000314992		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-3CDS	ENST00000354744	ENST00000458580		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
intron-intron	ENST00000354744	ENST00000559743		TCGA	RV	LGG	TCGA-DU-A7TC-01A	SEMA6D	chr15	48009889	+	EXD1	chr15	41488053	-
5CDS-5UTR	ENST00000443326	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443326	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443326	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443326	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443326	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443326	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-5UTR	ENST00000414585	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000414585	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000414585	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000414585	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000414585	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000414585	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-5UTR	ENST00000540643	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000540643	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000540643	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000540643	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000540643	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000540643	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-5UTR	ENST00000432498	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000432498	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000432498	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000432498	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000432498	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000432498	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-5UTR	ENST00000443011	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443011	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443011	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443011	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443011	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000443011	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-5UTR	ENST00000400289	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400289	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400289	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400289	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400289	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400289	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-5UTR	ENST00000400288	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400288	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400288	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400288	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400288	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
5CDS-intron	ENST00000400288	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
intron-5UTR	ENST00000474741	ENST00000406516		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
intron-intron	ENST00000474741	ENST00000444929		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
intron-intron	ENST00000474741	ENST00000331728		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
intron-intron	ENST00000474741	ENST00000333611		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
intron-intron	ENST00000474741	ENST00000340552		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
intron-intron	ENST00000474741	ENST00000467301		TCGA	RV	LGG	TCGA-CS-6666-01A	SFI1	chr22	31904362	+	LIMK2	chr22	31654277	+
Frame-shit	ENST00000377707	ENST00000396573		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
Frame-shit	ENST00000377707	ENST00000562109		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
Frame-shit	ENST00000377707	ENST00000535259		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
Frame-shit	ENST00000377707	ENST00000404927		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
Frame-shit	ENST00000377707	ENST00000330684		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
Frame-shit	ENST00000377707	ENST00000396575		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
5CDS-intron	ENST00000377707	ENST00000566670		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-3CDS	ENST00000377700	ENST00000396573		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-3CDS	ENST00000377700	ENST00000562109		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-3CDS	ENST00000377700	ENST00000535259		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-3CDS	ENST00000377700	ENST00000404927		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-3CDS	ENST00000377700	ENST00000330684		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-3CDS	ENST00000377700	ENST00000396575		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
intron-intron	ENST00000377700	ENST00000566670		TCGA	RV	LGG	TCGA-CS-5397-01A	SHB	chr9	37955880	-	GRIN2A	chr16	9943818	-
In-frame	ENST00000264554	ENST00000541714		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
In-frame	ENST00000264554	ENST00000539908		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
In-frame	ENST00000264554	ENST00000382008		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
In-frame	ENST00000264554	ENST00000589378		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
In-frame	ENST00000264554	ENST00000262968		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
In-frame	ENST00000264554	ENST00000587686		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
5CDS-3UTR	ENST00000264554	ENST00000587641		TCGA	RV	LGG	TCGA-DB-5270-01A	SHC2	chr19	440862	-	TJP3	chr19	3750136	+
5UTR-3UTR	ENST00000380752	ENST00000465952		TCGA	RV	LGG	TCGA-TM-A84B-01A	SLC7A1	chr13	30127898	-	USPL1	chr13	31195901	+
5UTR-3UTR	ENST00000380752	ENST00000255304		TCGA	RV	LGG	TCGA-TM-A84B-01A	SLC7A1	chr13	30127898	-	USPL1	chr13	31195901	+
intron-3UTR	ENST00000473577	ENST00000465952		TCGA	RV	LGG	TCGA-TM-A84B-01A	SLC7A1	chr13	30127898	-	USPL1	chr13	31195901	+
intron-3UTR	ENST00000473577	ENST00000255304		TCGA	RV	LGG	TCGA-TM-A84B-01A	SLC7A1	chr13	30127898	-	USPL1	chr13	31195901	+
5UTR-3CDS	ENST00000499676	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000499676	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-intron	ENST00000499676	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000489671	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000489671	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-intron	ENST00000489671	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000486111	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000486111	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-intron	ENST00000486111	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000477292	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000477292	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-intron	ENST00000477292	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000495310	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000495310	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-intron	ENST00000495310	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000467072	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000467072	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-intron	ENST00000467072	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000317104	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000317104	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-intron	ENST00000317104	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000310282	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000310282	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-intron	ENST00000310282	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000479040	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000479040	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-intron	ENST00000479040	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000397991	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-3CDS	ENST00000397991	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
intron-intron	ENST00000397991	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000464782	ENST00000392993		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-3CDS	ENST00000464782	ENST00000544571		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
5UTR-intron	ENST00000464782	ENST00000466685		TCGA	RV	LGG	TCGA-HT-7880-01A	TFDP2	chr3	141868025	-	GK5	chr3	141917775	-
Frame-shit	ENST00000436636	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000436636	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000436636	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000538048	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000538048	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000538048	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000369326	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000369326	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000369326	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000341852	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000341852	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000341852	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000284483	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000284483	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000284483	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000470834	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000470834	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000470834	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000460047	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000460047	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000460047	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000475336	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000475336	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000475336	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000488470	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000488470	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000488470	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000357327	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000357327	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000357327	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
intron-3CDS	ENST00000464785	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
intron-3CDS	ENST00000464785	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
intron-3CDS	ENST00000464785	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
intron-3CDS	ENST00000465393	ENST00000351989		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
intron-3CDS	ENST00000465393	ENST00000383024		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
intron-3CDS	ENST00000465393	ENST00000407755		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	170841385	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000262395	ENST00000306749		TCGA	RV	LGG	TCGA-QH-A6CV-01A	TRAF4	chr17	27071273	+	FASN	chr17	80038798	-
5CDS-intron	ENST00000262395	ENST00000579758		TCGA	RV	LGG	TCGA-QH-A6CV-01A	TRAF4	chr17	27071273	+	FASN	chr17	80038798	-
Frame-shit	ENST00000444415	ENST00000306749		TCGA	RV	LGG	TCGA-QH-A6CV-01A	TRAF4	chr17	27071273	+	FASN	chr17	80038798	-
5CDS-intron	ENST00000444415	ENST00000579758		TCGA	RV	LGG	TCGA-QH-A6CV-01A	TRAF4	chr17	27071273	+	FASN	chr17	80038798	-
Frame-shit	ENST00000262396	ENST00000306749		TCGA	RV	LGG	TCGA-QH-A6CV-01A	TRAF4	chr17	27071273	+	FASN	chr17	80038798	-
5CDS-intron	ENST00000262396	ENST00000579758		TCGA	RV	LGG	TCGA-QH-A6CV-01A	TRAF4	chr17	27071273	+	FASN	chr17	80038798	-
In-frame	ENST00000451813	ENST00000371741		TCGA	RV	LGG	TCGA-TM-A84H-01A	TRPC4AP	chr20	33657099	-	KCNB1	chr20	47991529	-
In-frame	ENST00000252015	ENST00000371741		TCGA	RV	LGG	TCGA-TM-A84H-01A	TRPC4AP	chr20	33657099	-	KCNB1	chr20	47991529	-
intron-3CDS	ENST00000539834	ENST00000371741		TCGA	RV	LGG	TCGA-TM-A84H-01A	TRPC4AP	chr20	33657099	-	KCNB1	chr20	47991529	-
intron-3CDS	ENST00000432634	ENST00000371741		TCGA	RV	LGG	TCGA-TM-A84H-01A	TRPC4AP	chr20	33657099	-	KCNB1	chr20	47991529	-
5CDS-5UTR	ENST00000283629	ENST00000383737		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000395734		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000426837		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000360240		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000439356		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000264724		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000420772		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000441748		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000462206		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000434267		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000383737		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000395734		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000426837		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000360240		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000439356		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000264724		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000420772		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000441748		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000462206		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000434267		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000383737		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000395734		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000426837		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000360240		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000439356		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000264724		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000420772		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000441748		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000462206		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000434267		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000383737		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000395734		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000426837		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000360240		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000439356		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000264724		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000420772		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000441748		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000462206		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000434267		TCGA	RV	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33481228	-	MAP4	chr3	48040369	-
Frame-shit	ENST00000375217	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375217	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375217	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375226	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375226	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375226	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375267	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375267	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375267	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375254	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375254	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000375254	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375225	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375225	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375225	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000429347	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000429347	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000429347	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375224	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375224	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375224	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000543981	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000543981	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000543981	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000467272	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000467272	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000467272	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375218	ENST00000375375		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375218	ENST00000420770		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
intron-3CDS	ENST00000375218	ENST00000400661		TCGA	RV	LGG	TCGA-DU-8158-01A	UBR4	chr1	19486605	-	PAX7	chr1	19018248	+
Frame-shit	ENST00000300896	ENST00000446864		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
In-frame	ENST00000300896	ENST00000370504		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
intron-3CDS	ENST00000592339	ENST00000446864		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
intron-3CDS	ENST00000592339	ENST00000370504		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
Frame-shit	ENST00000393003	ENST00000446864		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
In-frame	ENST00000393003	ENST00000370504		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
intron-3CDS	ENST00000586881	ENST00000446864		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
intron-3CDS	ENST00000586881	ENST00000370504		TCGA	RV	LGG	TCGA-S9-A6WG-01A	USP32	chr17	58422842	-	SPANXN4	chrX	142121811	+
In-frame	ENST00000310301	ENST00000404826		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
In-frame	ENST00000310301	ENST00000389531		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
5CDS-intron	ENST00000310301	ENST00000466611		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
In-frame	ENST00000395969	ENST00000404826		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
In-frame	ENST00000395969	ENST00000389531		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
5CDS-intron	ENST00000395969	ENST00000466611		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
5UTR-3CDS	ENST00000466017	ENST00000404826		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
5UTR-3CDS	ENST00000466017	ENST00000389531		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
5UTR-intron	ENST00000466017	ENST00000466611		TCGA	RV	LGG	TCGA-DU-6399-01A	VPS41	chr7	38835065	-	SDK1	chr7	4150295	+
Frame-shit	ENST00000508803	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000508803	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000508803	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000508803	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000508803	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000508803	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382892	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382892	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382892	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382892	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382892	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382892	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382891	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382891	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382891	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382891	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382891	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382891	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382895	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382895	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382895	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382895	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382895	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382895	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
3UTR-3CDS	ENST00000482415	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
3UTR-3CDS	ENST00000482415	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
3UTR-3CDS	ENST00000482415	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
3UTR-3CDS	ENST00000482415	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
3UTR-3CDS	ENST00000482415	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
3UTR-3CDS	ENST00000482415	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382888	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382888	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382888	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382888	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382888	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000382888	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000514045	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000514045	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000514045	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000514045	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000514045	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000514045	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000436793	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000436793	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000436793	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000436793	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000436793	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000436793	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000420906	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000420906	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000420906	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000420906	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000420906	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000420906	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000503128	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000503128	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000503128	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000503128	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000503128	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000503128	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000398261	ENST00000275262		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000398261	ENST00000392127		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000398261	ENST00000453779		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000398261	ENST00000361752		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000398261	ENST00000361195		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
intron-3CDS	ENST00000398261	ENST00000424802		TCGA	RV	LGG	TCGA-WY-A859-01A	WHSC1	chr4	1959763	+	QKI	chr6	163876311	+
Frame-shit	ENST00000589717	ENST00000263278		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
Frame-shit	ENST00000589717	ENST00000599157		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
5UTR-3CDS	ENST00000355650	ENST00000263278		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
5UTR-3CDS	ENST00000355650	ENST00000599157		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
5CDS-5UTR	ENST00000369577	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-5UTR	ENST00000339907	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-5UTR	ENST00000392985	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-5UTR	ENST00000369578	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5UTR-3CDS	ENST00000419886	ENST00000254325		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF433	chr19	12146352	-	RFX1	chr19	14091501	-
5UTR-intron	ENST00000419886	ENST00000586913		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF433	chr19	12146352	-	RFX1	chr19	14091501	-
In-frame	ENST00000344980	ENST00000254325		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF433	chr19	12146352	-	RFX1	chr19	14091501	-
5CDS-intron	ENST00000344980	ENST00000586913		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF433	chr19	12146352	-	RFX1	chr19	14091501	-
intron-3CDS	ENST00000395496	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
5UTR-3CDS	ENST00000375107	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000395499	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000375104	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000490711	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000395497	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000336984	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
5UTR-3CDS	ENST00000412465	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000433896	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000416363	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000424030	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000439774	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000496883	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000440840	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000430777	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000457923	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000446463	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000449776	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000427763	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000474349	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000446323	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000425204	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000434614	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000452427	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000430226	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000425572	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000490267	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000436149	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000448196	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000399827	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000399833	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000399825	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000399830	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000474400	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000399829	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000383294	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000414520	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000414933	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000444369	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000456421	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000488004	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000454929	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000456679	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000452393	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000433376	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000415173	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000455898	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000479245	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000451833	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
intron-3CDS	ENST00000417388	ENST00000367658		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AGPAT1	chr6	32143591	-	HECA	chr6	139487421	+
5CDS-5UTR	ENST00000257787	ENST00000265348		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AKIRIN2	chr6	88411168	-	CUL7	chr6	43020534	-
5CDS-5UTR	ENST00000257787	ENST00000535468		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AKIRIN2	chr6	88411168	-	CUL7	chr6	43020534	-
5CDS-intron	ENST00000257787	ENST00000478630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AKIRIN2	chr6	88411168	-	CUL7	chr6	43020534	-
5UTR-5UTR	ENST00000420494	ENST00000265348		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AKIRIN2	chr6	88411168	-	CUL7	chr6	43020534	-
5UTR-5UTR	ENST00000420494	ENST00000535468		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AKIRIN2	chr6	88411168	-	CUL7	chr6	43020534	-
5UTR-intron	ENST00000420494	ENST00000478630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	AKIRIN2	chr6	88411168	-	CUL7	chr6	43020534	-
5CDS-5UTR	ENST00000242728	ENST00000541632		TCGA	RV	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000242728	ENST00000229002		TCGA	RV	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000242728	ENST00000538724		TCGA	RV	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000242728	ENST00000536890		TCGA	RV	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18241890	-
In-frame	ENST00000409293	ENST00000264560		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
In-frame	ENST00000409293	ENST00000338448		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
5CDS-intron	ENST00000409293	ENST00000593172		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
intron-3CDS	ENST00000469144	ENST00000264560		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
intron-3CDS	ENST00000469144	ENST00000338448		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
intron-intron	ENST00000469144	ENST00000593172		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
intron-3CDS	ENST00000590269	ENST00000264560		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
intron-3CDS	ENST00000590269	ENST00000338448		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
intron-intron	ENST00000590269	ENST00000593172		TCGA	RV	LGG	TCGA-DB-A64U-01A	C19orf24	chr19	1275829	+	PALM	chr19	726138	+
5CDS-5UTR	ENST00000263284	ENST00000308064		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000263284	ENST00000533673		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000595358	ENST00000308064		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000595358	ENST00000533673		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000536603	ENST00000308064		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000536603	ENST00000533673		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000594087	ENST00000308064		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000594087	ENST00000533673		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
intron-5UTR	ENST00000601763	ENST00000308064		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
intron-intron	ENST00000601763	ENST00000533673		TCGA	RV	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506424	+	CHST1	chr11	45674156	-
5UTR-3CDS	ENST00000539107	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
5UTR-intron	ENST00000539107	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
5UTR-3CDS	ENST00000545336	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
5UTR-intron	ENST00000545336	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-3CDS	ENST00000381256	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-intron	ENST00000381256	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-3CDS	ENST00000381259	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-intron	ENST00000381259	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-3CDS	ENST00000540401	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-intron	ENST00000540401	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-3CDS	ENST00000306172	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
intron-intron	ENST00000306172	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCDC91	chr12	28343574	+	KRT7	chr12	52628939	+
Frame-shit	ENST00000262570	ENST00000285968		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5CDS-intron	ENST00000262570	ENST00000440390		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5CDS-intron	ENST00000262570	ENST00000489493		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
Frame-shit	ENST00000448878	ENST00000285968		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5CDS-intron	ENST00000448878	ENST00000440390		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5CDS-intron	ENST00000448878	ENST00000489493		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5UTR-3CDS	ENST00000476546	ENST00000285968		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5UTR-intron	ENST00000476546	ENST00000440390		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5UTR-intron	ENST00000476546	ENST00000489493		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
Frame-shit	ENST00000542753	ENST00000285968		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5CDS-intron	ENST00000542753	ENST00000440390		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
5CDS-intron	ENST00000542753	ENST00000489493		TCGA	RV	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	NUP205	chr7	135333152	+
3UTR-intron	ENST00000402744	ENST00000309364		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000359180		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000317589		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000355397		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000429027		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000539256		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000299275		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000538714		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000543806		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000424268		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000540972		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000402744	ENST00000510738		TCGA	RV	LGG	TCGA-HT-7873-01B	CPE	chr4	166419458	+	PLEKHA5	chr12	19441012	+
5CDS-5UTR	ENST00000283365	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000283365	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000283365	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000596745	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000596745	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000596745	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000315456	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000315456	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000315456	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000598334	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000598334	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000598334	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000554864	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000554864	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000554864	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000399121	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000399121	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000399121	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000595022	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000595022	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000595022	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000269190	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000269190	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000269190	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000399097	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000399097	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5UTR-intron	ENST00000399097	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000598774	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000598774	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000598774	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000598142	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000598142	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000598142	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000348997	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000348997	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000348997	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000597599	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000597599	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000597599	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000269191	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000269191	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000269191	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000444659	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000444659	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000444659	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000399113	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000399113	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000399113	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000601125	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000601125	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000601125	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000269192	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000269192	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000269192	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000591182	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000591182	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000591182	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000597674	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000597674	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000597674	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000556414	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000556414	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000556414	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000599844	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000599844	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000599844	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000590831	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000590831	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000590831	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000592449	ENST00000227155		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000592449	ENST00000342935		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
intron-intron	ENST00000592449	ENST00000530931		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	DTNA	chr18	32346005	+	CD82	chr11	44609025	+
In-frame	ENST00000378116	ENST00000376070		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
In-frame	ENST00000378116	ENST00000376087		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
In-frame	ENST00000378116	ENST00000436985		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
5CDS-intron	ENST00000378116	ENST00000466890		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
intron-3CDS	ENST00000477161	ENST00000376070		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
intron-3CDS	ENST00000477161	ENST00000376087		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
intron-3CDS	ENST00000477161	ENST00000436985		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
intron-intron	ENST00000477161	ENST00000466890		TCGA	RV	LGG	TCGA-FG-8185-01A	FAM171A1	chr10	15412955	-	ANKRD26	chr10	27318285	-
Frame-shit	ENST00000545951	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000545951	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000545951	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000545951	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000545951	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000545951	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000382839	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000382839	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000382839	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000324666	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000324666	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000324666	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000502458	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000502458	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000502458	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000506140		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000515571		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000382599		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
Frame-shit	ENST00000505311	ENST00000507294		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000505311	ENST00000314348		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000505311	ENST00000335585		TCGA	RV	LGG	TCGA-DH-A669-01A	FAM193A	chr4	2632896	+	PPP2R2C	chr4	6335458	-
5CDS-intron	ENST00000454189	ENST00000284049		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000454189	ENST00000511067		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000398361	ENST00000284049		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000398361	ENST00000511067		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000316715	ENST00000284049		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000316715	ENST00000511067		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000493677	ENST00000284049		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000493677	ENST00000511067		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000355135	ENST00000284049		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000355135	ENST00000511067		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000356942	ENST00000284049		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
intron-intron	ENST00000356942	ENST00000511067		TCGA	RV	LGG	TCGA-HT-7611-01A	GPM6B	chrX	13789575	-	CHD1	chr5	98219587	-
5CDS-5UTR	ENST00000373548	ENST00000371370		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
5CDS-5UTR	ENST00000373548	ENST00000319223		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
5CDS-intron	ENST00000373548	ENST00000477905		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
intron-5UTR	ENST00000373541	ENST00000371370		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
intron-5UTR	ENST00000373541	ENST00000319223		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
intron-intron	ENST00000373541	ENST00000477905		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
intron-5UTR	ENST00000490081	ENST00000371370		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
intron-5UTR	ENST00000490081	ENST00000319223		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
intron-intron	ENST00000490081	ENST00000477905		TCGA	RV	LGG	TCGA-HT-7860-01A	HDAC1	chr1	32757819	+	LRRC42	chr1	54417659	+
Frame-shit	ENST00000393295	ENST00000337774		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
Frame-shit	ENST00000393295	ENST00000296280		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000393295	ENST00000392472		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000393295	ENST00000495249		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000393295	ENST00000169293		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-5UTR	ENST00000393295	ENST00000392470		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5UTR-3CDS	ENST00000471497	ENST00000337774		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5UTR-3CDS	ENST00000471497	ENST00000296280		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5UTR-intron	ENST00000471497	ENST00000392472		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5UTR-intron	ENST00000471497	ENST00000495249		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5UTR-intron	ENST00000471497	ENST00000169293		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5UTR-5UTR	ENST00000471497	ENST00000392470		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
Frame-shit	ENST00000273541	ENST00000337774		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
Frame-shit	ENST00000273541	ENST00000296280		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000273541	ENST00000392472		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000273541	ENST00000495249		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000273541	ENST00000169293		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-5UTR	ENST00000273541	ENST00000392470		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
Frame-shit	ENST00000393292	ENST00000337774		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
Frame-shit	ENST00000393292	ENST00000296280		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000393292	ENST00000392472		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000393292	ENST00000495249		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-intron	ENST00000393292	ENST00000169293		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
5CDS-5UTR	ENST00000393292	ENST00000392470		TCGA	RV	LGG	TCGA-HT-A5RA-01A	ISY1	chr3	128875476	-	MASP1	chr3	187003844	-
In-frame	ENST00000367265	ENST00000608999		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367265	ENST00000336894		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367265	ENST00000480184		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367265	ENST00000356764		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-intron	ENST00000367265	ENST00000290419		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-intron	ENST00000367265	ENST00000391959		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-intron	ENST00000367265	ENST00000367270		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367264	ENST00000608999		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367264	ENST00000336894		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367264	ENST00000480184		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
In-frame	ENST00000367264	ENST00000356764		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-intron	ENST00000367264	ENST00000290419		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-intron	ENST00000367264	ENST00000391959		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-intron	ENST00000367264	ENST00000367270		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-3CDS	ENST00000456180	ENST00000608999		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-3CDS	ENST00000456180	ENST00000336894		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-3CDS	ENST00000456180	ENST00000480184		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-3CDS	ENST00000456180	ENST00000356764		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-intron	ENST00000456180	ENST00000290419		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-intron	ENST00000456180	ENST00000391959		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
intron-intron	ENST00000456180	ENST00000367270		TCGA	RV	LGG	TCGA-FG-5965-02B	KDM5B	chr1	202743741	-	PPP1R12B	chr1	202385915	+
5CDS-5UTR	ENST00000230538	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000230538	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000522006	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000522006	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000389463	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000389463	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000424408	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
5CDS-5UTR	ENST00000424408	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000524032	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000524032	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000431543	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000431543	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000368638	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000368638	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000453937	ENST00000520358		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
intron-5UTR	ENST00000453937	ENST00000340160		TCGA	RV	LGG	TCGA-TQ-A7RF-01A	LAMA4	chr6	112496515	-	TSPAN18	chr11	44927958	+
Frame-shit	ENST00000253193	ENST00000304076		TCGA	RV	LGG	TCGA-P5-A5EU-01A	LRP3	chr19	33687683	+	VAV1	chr19	6820713	+
Frame-shit	ENST00000253193	ENST00000602142		TCGA	RV	LGG	TCGA-P5-A5EU-01A	LRP3	chr19	33687683	+	VAV1	chr19	6820713	+
Frame-shit	ENST00000253193	ENST00000596764		TCGA	RV	LGG	TCGA-P5-A5EU-01A	LRP3	chr19	33687683	+	VAV1	chr19	6820713	+
Frame-shit	ENST00000253193	ENST00000539284		TCGA	RV	LGG	TCGA-P5-A5EU-01A	LRP3	chr19	33687683	+	VAV1	chr19	6820713	+
Frame-shit	ENST00000253193	ENST00000599806		TCGA	RV	LGG	TCGA-P5-A5EU-01A	LRP3	chr19	33687683	+	VAV1	chr19	6820713	+
Frame-shit	ENST00000370888	ENST00000371460		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370888	ENST00000371459		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370888	ENST00000371461		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370888	ENST00000306867		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370888	ENST00000371458		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000370888	ENST00000459689		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370882	ENST00000371460		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370882	ENST00000371459		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370882	ENST00000371461		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370882	ENST00000306867		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000370882	ENST00000371458		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000370882	ENST00000459689		TCGA	RV	LGG	TCGA-HT-7477-01B	LRRC1	chr6	53707025	+	SUPT3H	chr6	44797594	-
5UTR-3CDS	ENST00000395808	ENST00000264560		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000395808	ENST00000338448		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3UTR	ENST00000395808	ENST00000593172		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
intron-3CDS	ENST00000589119	ENST00000264560		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
intron-3CDS	ENST00000589119	ENST00000338448		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
intron-3UTR	ENST00000589119	ENST00000593172		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000312090	ENST00000264560		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000312090	ENST00000338448		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3UTR	ENST00000312090	ENST00000593172		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000269814	ENST00000264560		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000269814	ENST00000338448		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3UTR	ENST00000269814	ENST00000593172		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000325464	ENST00000264560		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3CDS	ENST00000325464	ENST00000338448		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
5UTR-3UTR	ENST00000325464	ENST00000593172		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
intron-3CDS	ENST00000606828	ENST00000264560		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
intron-3CDS	ENST00000606828	ENST00000338448		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
intron-3UTR	ENST00000606828	ENST00000593172		TCGA	RV	LGG	TCGA-FG-A710-01A	MED16	chr19	893086	-	PALM	chr19	746285	+
In-frame	ENST00000382172	ENST00000252577		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
In-frame	ENST00000382172	ENST00000360315		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000382172	ENST00000537887		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000382172	ENST00000404158		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000382172	ENST00000358713		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000382172	ENST00000429563		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000382172	ENST00000473184		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-3CDS	ENST00000469167	ENST00000252577		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-3CDS	ENST00000469167	ENST00000360315		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-intron	ENST00000469167	ENST00000537887		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-intron	ENST00000469167	ENST00000404158		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-intron	ENST00000469167	ENST00000358713		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-intron	ENST00000469167	ENST00000429563		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
intron-3UTR	ENST00000469167	ENST00000473184		TCGA	RV	LGG	TCGA-TM-A84B-01A	MIPEP	chr13	24432999	-	GATAD2A	chr19	19603115	+
In-frame	ENST00000571589	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000571589	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000571589	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000571589	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000571589	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000571589	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
In-frame	ENST00000574045	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000574045	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000574045	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000574045	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000574045	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000574045	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
In-frame	ENST00000318282	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000318282	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000318282	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000318282	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000318282	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000318282	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
In-frame	ENST00000572567	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000572567	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000572567	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000572567	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000572567	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000572567	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
In-frame	ENST00000341243	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000341243	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000341243	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000341243	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000341243	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000341243	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
intron-3CDS	ENST00000575537	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
intron-5UTR	ENST00000575537	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
intron-5UTR	ENST00000575537	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
intron-intron	ENST00000575537	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
intron-intron	ENST00000575537	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
intron-intron	ENST00000575537	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
In-frame	ENST00000573051	ENST00000396868		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000573051	ENST00000414144		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000573051	ENST00000396871		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000573051	ENST00000431561		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000573051	ENST00000396870		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000573051	ENST00000575948		TCGA	RV	LGG	TCGA-CS-5397-01A	MKL2	chr16	14328140	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000360149	ENST00000396037		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-intron	ENST00000360149	ENST00000539510		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-5UTR	ENST00000360149	ENST00000536558		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-3UTR	ENST00000360149	ENST00000404299		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-3UTR	ENST00000360149	ENST00000381424		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-intron	ENST00000536311	ENST00000396037		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-intron	ENST00000536311	ENST00000539510		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-5UTR	ENST00000536311	ENST00000536558		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-3UTR	ENST00000536311	ENST00000404299		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-3UTR	ENST00000536311	ENST00000381424		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-intron	ENST00000328439	ENST00000396037		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-intron	ENST00000328439	ENST00000539510		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-5UTR	ENST00000328439	ENST00000536558		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-3UTR	ENST00000328439	ENST00000404299		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-3UTR	ENST00000328439	ENST00000381424		TCGA	RV	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22478393	-
5CDS-5UTR	ENST00000252575	ENST00000339093		TCGA	RV	LGG	TCGA-TM-A7CF-02A	NCAN	chr19	19345905	+	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000252575	ENST00000596358		TCGA	RV	LGG	TCGA-TM-A7CF-02A	NCAN	chr19	19345905	+	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000252575	ENST00000391853		TCGA	RV	LGG	TCGA-TM-A7CF-02A	NCAN	chr19	19345905	+	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000538881	ENST00000339093		TCGA	RV	LGG	TCGA-TM-A7CF-02A	NCAN	chr19	19345905	+	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000538881	ENST00000596358		TCGA	RV	LGG	TCGA-TM-A7CF-02A	NCAN	chr19	19345905	+	NOSIP	chr19	50063949	-
5CDS-5UTR	ENST00000538881	ENST00000391853		TCGA	RV	LGG	TCGA-TM-A7CF-02A	NCAN	chr19	19345905	+	NOSIP	chr19	50063949	-
Frame-shit	ENST00000405201	ENST00000422113		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
5CDS-intron	ENST00000405201	ENST00000389441		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
In-frame	ENST00000404621	ENST00000422113		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
5CDS-intron	ENST00000404621	ENST00000389441		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
In-frame	ENST00000404121	ENST00000422113		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
5CDS-intron	ENST00000404121	ENST00000389441		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
In-frame	ENST00000356219	ENST00000422113		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
5CDS-intron	ENST00000356219	ENST00000389441		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
In-frame	ENST00000397355	ENST00000422113		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
5CDS-intron	ENST00000397355	ENST00000389441		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
In-frame	ENST00000429285	ENST00000422113		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
5CDS-intron	ENST00000429285	ENST00000389441		TCGA	RV	LGG	TCGA-DU-8167-01A	NCOR2	chr12	124885047	-	TMEM132D	chr12	130015750	-
In-frame	ENST00000589123	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000589123	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000589123	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000346156	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000346156	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000346156	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000395111	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000395111	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000395111	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000586919	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000586919	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000586919	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000341919	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000341919	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000341919	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000590282	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000590282	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000590282	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000443272	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
In-frame	ENST00000443272	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-3UTR	ENST00000443272	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
intron-3CDS	ENST00000588839	ENST00000292672		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
intron-3CDS	ENST00000588839	ENST00000541430		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
intron-3UTR	ENST00000588839	ENST00000588101		TCGA	RV	LGG	TCGA-DU-6396-01A	NFIC	chr19	3435205	+	CELF5	chr19	3284900	+
5CDS-5UTR	ENST00000326005	ENST00000560606		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
5CDS-5UTR	ENST00000326005	ENST00000300069		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
5CDS-5UTR	ENST00000560258	ENST00000560606		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
5CDS-5UTR	ENST00000560258	ENST00000300069		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000559753	ENST00000560606		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000559753	ENST00000300069		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
5UTR-5UTR	ENST00000560837	ENST00000560606		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
5UTR-5UTR	ENST00000560837	ENST00000300069		TCGA	RV	LGG	TCGA-FG-A87Q-01A	OAZ2	chr15	64983633	-	RBPMS2	chr15	65043837	-
3UTR-3CDS	ENST00000488996	ENST00000437600		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-3CDS	ENST00000488996	ENST00000292538		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-3CDS	ENST00000488996	ENST00000393824		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000547394		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000360264		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000425244		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000292535		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000549414		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000556210		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000550008		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-intron	ENST00000488996	ENST00000546411		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
3UTR-3UTR	ENST00000488996	ENST00000560541		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000356387	ENST00000437600		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000356387	ENST00000292538		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000356387	ENST00000393824		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000547394		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000360264		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000425244		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000292535		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000549414		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000556210		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000550008		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000356387	ENST00000546411		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3UTR	ENST00000356387	ENST00000560541		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000478730	ENST00000437600		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000478730	ENST00000292538		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000478730	ENST00000393824		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000547394		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000360264		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000425244		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000292535		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000549414		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000556210		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000550008		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000478730	ENST00000546411		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3UTR	ENST00000478730	ENST00000560541		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000403646	ENST00000437600		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000403646	ENST00000292538		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3CDS	ENST00000403646	ENST00000393824		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000547394		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000360264		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000425244		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000292535		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000549414		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000556210		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000550008		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-intron	ENST00000403646	ENST00000546411		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
5UTR-3UTR	ENST00000403646	ENST00000560541		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-3CDS	ENST00000473939	ENST00000437600		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-3CDS	ENST00000473939	ENST00000292538		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-3CDS	ENST00000473939	ENST00000393824		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000547394		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000360264		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000425244		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000292535		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000549414		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000556210		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000550008		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-intron	ENST00000473939	ENST00000546411		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-3UTR	ENST00000473939	ENST00000560541		TCGA	RV	LGG	TCGA-DU-8165-01A	ORAI2	chr7	102074108	+	CUX1	chr7	101671378	+
intron-3CDS	ENST00000361417	ENST00000227752		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000361417	ENST00000533700		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000361417	ENST00000545409		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000361417	ENST00000541785		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
5UTR-3CDS	ENST00000356063	ENST00000227752		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
5UTR-3UTR	ENST00000356063	ENST00000533700		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
5UTR-3UTR	ENST00000356063	ENST00000545409		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
5UTR-3UTR	ENST00000356063	ENST00000541785		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3CDS	ENST00000534672	ENST00000227752		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000534672	ENST00000533700		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000534672	ENST00000545409		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000534672	ENST00000541785		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3CDS	ENST00000527898	ENST00000227752		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000527898	ENST00000533700		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000527898	ENST00000545409		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000527898	ENST00000541785		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3CDS	ENST00000524713	ENST00000227752		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000524713	ENST00000533700		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000524713	ENST00000545409		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
intron-3UTR	ENST00000524713	ENST00000541785		TCGA	RV	LGG	TCGA-DU-6396-01A	PHLDB1	chr11	118478414	+	IL10RA	chr11	117864714	+
5CDS-intron	ENST00000228347	ENST00000547153		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000228347	ENST00000299045		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000228347	ENST00000546625		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000228347	ENST00000552690		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000539066	ENST00000547153		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000539066	ENST00000299045		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000539066	ENST00000546625		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
5CDS-intron	ENST00000539066	ENST00000552690		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
3UTR-intron	ENST00000549195	ENST00000547153		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
3UTR-intron	ENST00000549195	ENST00000299045		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
3UTR-intron	ENST00000549195	ENST00000546625		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
3UTR-intron	ENST00000549195	ENST00000552690		TCGA	RV	LGG	TCGA-E1-A7YE-01A	POLR3B	chr12	106804738	+	TCP11L2	chr12	106740064	+
intron-intron	ENST00000540871	ENST00000331968		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
intron-intron	ENST00000540871	ENST00000415220		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
intron-intron	ENST00000540871	ENST00000551644		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000261479	ENST00000331968		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000261479	ENST00000415220		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000261479	ENST00000551644		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000553809	ENST00000331968		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000553809	ENST00000415220		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000553809	ENST00000551644		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5UTR-intron	ENST00000555764	ENST00000331968		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5UTR-intron	ENST00000555764	ENST00000415220		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5UTR-intron	ENST00000555764	ENST00000551644		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000556506	ENST00000331968		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000556506	ENST00000415220		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
5CDS-intron	ENST00000556506	ENST00000551644		TCGA	RV	LGG	TCGA-DU-6402-01A	PSMA6	chr14	35761758	+	PRKD1	chr14	30516993	-
intron-3CDS	ENST00000458477	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000458477	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000458477	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000458477	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000458477	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000458477	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000458477	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000458477	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000228307	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000228307	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000424649	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000424649	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000397506	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000397506	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000536957	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000536957	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
Frame-shit	ENST00000267257	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
5CDS-intron	ENST00000267257	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-3CDS	ENST00000538144	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
intron-intron	ENST00000538144	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	PXN	chr12	120703420	-	MYBPC1	chr12	102041823	+
In-frame	ENST00000012049	ENST00000292147		TCGA	RV	LGG	TCGA-HT-7470-01A	QPCTL	chr19	46198976	+	ETHE1	chr19	44015718	-
In-frame	ENST00000012049	ENST00000600651		TCGA	RV	LGG	TCGA-HT-7470-01A	QPCTL	chr19	46198976	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000366382	ENST00000292147		TCGA	RV	LGG	TCGA-HT-7470-01A	QPCTL	chr19	46198976	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000366382	ENST00000600651		TCGA	RV	LGG	TCGA-HT-7470-01A	QPCTL	chr19	46198976	+	ETHE1	chr19	44015718	-
5CDS-intron	ENST00000265062	ENST00000408982		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265062	ENST00000262477		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265062	ENST00000537505		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265062	ENST00000546142		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265062	ENST00000341923		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265062	ENST00000570487		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000482525	ENST00000408982		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000482525	ENST00000262477		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000482525	ENST00000537505		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000482525	ENST00000546142		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000482525	ENST00000341923		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000482525	ENST00000570487		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000485280	ENST00000408982		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000485280	ENST00000262477		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000485280	ENST00000537505		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000485280	ENST00000546142		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000485280	ENST00000341923		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000485280	ENST00000570487		TCGA	RV	LGG	TCGA-HW-8322-01A	RAB7A	chr3	128533639	+	RABEP1	chr17	5283828	+
5CDS-5UTR	ENST00000344532	ENST00000305861		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-intron	ENST00000344532	ENST00000392690		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-5UTR	ENST00000430805	ENST00000305861		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-intron	ENST00000430805	ENST00000392690		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-5UTR	ENST00000544492	ENST00000305861		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-intron	ENST00000544492	ENST00000392690		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-5UTR	ENST00000544904	ENST00000305861		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
5CDS-intron	ENST00000544904	ENST00000392690		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
intron-5UTR	ENST00000481144	ENST00000305861		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
intron-intron	ENST00000481144	ENST00000392690		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RCBTB2	chr13	49085906	-	B3GALT1	chr2	168725321	+
intron-3CDS	ENST00000425933	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000425933	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000425933	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000543599	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000543599	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000543599	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
Frame-shit	ENST00000329082	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
Frame-shit	ENST00000329082	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
5CDS-intron	ENST00000329082	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000542321	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000542321	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000542321	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000538818	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000538818	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000538818	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000557301	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000557301	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000557301	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000557420	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000557420	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000557420	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000556658	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000556658	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000556658	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000556087	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000556087	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000556087	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000555584	ENST00000286744		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-3CDS	ENST00000555584	ENST00000567476		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
intron-intron	ENST00000555584	ENST00000567716		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	RGMA	chr15	93632148	-	ADAMTSL3	chr15	84581844	+
Frame-shit	ENST00000553525	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553525	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000553525	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000555571	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000555571	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000553530	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000553530	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000556437	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000556437	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000355512	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000355512	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000406236	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000406236	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000404301	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000404301	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000407322	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000407322	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000402788	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000402788	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000343854	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000343854	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000434263	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000434263	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000554782	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
5CDS-intron	ENST00000554782	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000551492		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000346562		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000341321		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000548645		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000356141		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000357798		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000547068		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-3CDS	ENST00000553690	ENST00000551008		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
intron-intron	ENST00000553690	ENST00000550662		TCGA	RV	LGG	TCGA-DU-7006-01A	RGS6	chr14	72976987	+	NPAS3	chr14	34145417	+
Frame-shit	ENST00000308488	ENST00000417856		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000308488	ENST00000394067		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000308488	ENST00000421552		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000308488	ENST00000316924		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000308488	ENST00000394078		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000308488	ENST00000394066		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000308488	ENST00000394065		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000417856		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000394067		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000421552		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000316924		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000394078		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000394066		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000360355	ENST00000394065		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000417856		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000394067		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000421552		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000316924		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000394078		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000394066		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
intron-3CDS	ENST00000480887	ENST00000394065		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000417856		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000394067		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000421552		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000316924		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000394078		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000394066		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
5UTR-3CDS	ENST00000530604	ENST00000394065		TCGA	RV	LGG	TCGA-HT-7686-01A	RSF1	chr11	77531574	-	KLC2	chr11	66030285	+
Frame-shit	ENST00000394947	ENST00000306726		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
5CDS-intron	ENST00000394947	ENST00000564970		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
Frame-shit	ENST00000360439	ENST00000306726		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
5CDS-intron	ENST00000360439	ENST00000564970		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
Frame-shit	ENST00000394949	ENST00000306726		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
5CDS-intron	ENST00000394949	ENST00000564970		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
Frame-shit	ENST00000567289	ENST00000306726		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
5CDS-intron	ENST00000567289	ENST00000564970		TCGA	RV	LGG	TCGA-CS-5396-01A	SIN3A	chr15	75722528	-	PTPN9	chr15	75819602	-
Frame-shit	ENST00000379660	ENST00000370989		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
5CDS-5UTR	ENST00000379660	ENST00000475052		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
5CDS-5UTR	ENST00000379660	ENST00000284562		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
In-frame	ENST00000339306	ENST00000370989		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
5CDS-5UTR	ENST00000339306	ENST00000475052		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
5CDS-5UTR	ENST00000339306	ENST00000284562		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
intron-3CDS	ENST00000426876	ENST00000370989		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
intron-5UTR	ENST00000426876	ENST00000475052		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
intron-5UTR	ENST00000426876	ENST00000284562		TCGA	RV	LGG	TCGA-TQ-A7RK-02B	SLC35B3	chr6	8428170	-	GSTA5	chr6	52699080	-
3UTR-3CDS	ENST00000310358	ENST00000382743		TCGA	RV	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233534	-
3UTR-intron	ENST00000310358	ENST00000525319		TCGA	RV	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233534	-
3UTR-intron	ENST00000310358	ENST00000524564		TCGA	RV	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233534	-
3UTR-intron	ENST00000310358	ENST00000532956		TCGA	RV	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233534	-
3UTR-5UTR	ENST00000310358	ENST00000529382		TCGA	RV	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233534	-
3UTR-5UTR	ENST00000310358	ENST00000528702		TCGA	RV	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233534	-
Frame-shit	ENST00000369902	ENST00000372336		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
In-frame	ENST00000369902	ENST00000372333		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
Frame-shit	ENST00000369899	ENST00000372336		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
In-frame	ENST00000369899	ENST00000372333		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
Frame-shit	ENST00000423559	ENST00000372336		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
In-frame	ENST00000423559	ENST00000372333		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
intron-3CDS	ENST00000471000	ENST00000372336		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
intron-3CDS	ENST00000471000	ENST00000372333		TCGA	RV	LGG	TCGA-DU-7006-01A	SUFU	chr10	104309863	+	ZCCHC24	chr10	81154196	-
In-frame	ENST00000536252	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000536252	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
In-frame	ENST00000545103	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000545103	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
In-frame	ENST00000540348	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000540348	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-3CDS	ENST00000543944	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
intron-intron	ENST00000543944	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
In-frame	ENST00000297661	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000297661	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
In-frame	ENST00000379186	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000379186	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
In-frame	ENST00000359544	ENST00000380548		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000380545		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000327883		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000431052		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000380570		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000380566		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000276935		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5CDS-intron	ENST00000359544	ENST00000496521		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	UBAP1	chr9	34234338	+	ADAMTSL1	chr9	18504827	+
5UTR-3CDS	ENST00000232165	ENST00000261839		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
5UTR-intron	ENST00000232165	ENST00000443683		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
5UTR-intron	ENST00000232165	ENST00000541028		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000438097	ENST00000261839		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000438097	ENST00000443683		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000438097	ENST00000541028		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
5UTR-3CDS	ENST00000566215	ENST00000261839		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
5UTR-intron	ENST00000566215	ENST00000443683		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
5UTR-intron	ENST00000566215	ENST00000541028		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000428984	ENST00000261839		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000428984	ENST00000443683		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000428984	ENST00000541028		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000397954	ENST00000261839		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000397954	ENST00000443683		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000397954	ENST00000541028		TCGA	RV	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25683636	-	MYO5C	chr15	52500840	-
Frame-shit	ENST00000351842	ENST00000529202		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000351842	ENST00000263182		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000351842	ENST00000528583		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000351842	ENST00000525090		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
5CDS-3UTR	ENST00000351842	ENST00000527505		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000265560	ENST00000529202		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000265560	ENST00000263182		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000265560	ENST00000528583		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000265560	ENST00000525090		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
5CDS-3UTR	ENST00000265560	ENST00000527505		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000488520	ENST00000529202		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000488520	ENST00000263182		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000488520	ENST00000528583		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000488520	ENST00000525090		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3UTR	ENST00000488520	ENST00000527505		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000416417	ENST00000529202		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000416417	ENST00000263182		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000416417	ENST00000528583		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000416417	ENST00000525090		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3UTR	ENST00000416417	ENST00000527505		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000415188	ENST00000529202		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000415188	ENST00000263182		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000415188	ENST00000528583		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3CDS	ENST00000415188	ENST00000525090		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
intron-3UTR	ENST00000415188	ENST00000527505		TCGA	RV	LGG	TCGA-HT-A619-01A	USP4	chr3	49329943	-	BBOX1	chr11	27078748	+
Frame-shit	ENST00000262144	ENST00000283882		TCGA	RV	LGG	TCGA-DU-A7TC-01A	WDR59	chr16	75018862	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000262144	ENST00000564286		TCGA	RV	LGG	TCGA-DU-A7TC-01A	WDR59	chr16	75018862	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000562331	ENST00000283882		TCGA	RV	LGG	TCGA-DU-A7TC-01A	WDR59	chr16	75018862	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000562331	ENST00000564286		TCGA	RV	LGG	TCGA-DU-A7TC-01A	WDR59	chr16	75018862	-	CFDP1	chr16	75339080	-
5CDS-5UTR	ENST00000369577	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000369577	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-5UTR	ENST00000339907	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000339907	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-5UTR	ENST00000392985	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000392985	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-5UTR	ENST00000369578	ENST00000538487		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000374181		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000374177		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000544773		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000545715		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000535756		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000609222		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
3UTR-intron	ENST00000369578	ENST00000455714		TCGA	RV	LGG	TCGA-TM-A7CF-02A	ZNF292	chr6	87865477	+	GRM4	chr6	34101636	-
5CDS-intron	ENST00000238483	ENST00000373566		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000373563		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000409480		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000409547		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000409196		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000409451		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000482666		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000238483	ENST00000452341		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000373566		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000373563		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000409480		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000409547		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000409196		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000409451		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000482666		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000233607	ENST00000452341		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000373566		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000373563		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000409480		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000409547		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000409196		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000409451		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000482666		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
5CDS-intron	ENST00000535453	ENST00000452341		TCGA	RV	LGG	TCGA-DH-5144-01A	APC2	chr19	1473237	+	GIGYF2	chr2	233632812	+
Frame-shit	ENST00000369162	ENST00000339697		TCGA	RV	LGG	TCGA-E1-5304-01A	ASCC3	chr6	101163338	-	SERINC1	chr6	122768149	-
intron-3CDS	ENST00000522650	ENST00000339697		TCGA	RV	LGG	TCGA-E1-5304-01A	ASCC3	chr6	101163338	-	SERINC1	chr6	122768149	-
intron-3CDS	ENST00000369143	ENST00000339697		TCGA	RV	LGG	TCGA-E1-5304-01A	ASCC3	chr6	101163338	-	SERINC1	chr6	122768149	-
intron-3CDS	ENST00000371120	ENST00000316485		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
intron-3CDS	ENST00000371120	ENST00000371158		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
intron-3CDS	ENST00000371120	ENST00000543708		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
intron-3CDS	ENST00000371120	ENST00000545929		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
intron-intron	ENST00000371120	ENST00000472512		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
5UTR-3CDS	ENST00000317868	ENST00000316485		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
5UTR-3CDS	ENST00000317868	ENST00000371158		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
5UTR-3CDS	ENST00000317868	ENST00000543708		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
5UTR-3CDS	ENST00000317868	ENST00000545929		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
5UTR-intron	ENST00000317868	ENST00000472512		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG4C	chr1	63249944	+	INADL	chr1	62545122	+
In-frame	ENST00000296452	ENST00000256496		TCGA	RV	LGG	TCGA-DU-6396-01A	BSN	chr3	49680585	+	ARL8B	chr3	5212188	+
In-frame	ENST00000296452	ENST00000419534		TCGA	RV	LGG	TCGA-DU-6396-01A	BSN	chr3	49680585	+	ARL8B	chr3	5212188	+
5CDS-intron	ENST00000296452	ENST00000468010		TCGA	RV	LGG	TCGA-DU-6396-01A	BSN	chr3	49680585	+	ARL8B	chr3	5212188	+
5CDS-intron	ENST00000377795	ENST00000367545		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000377795	ENST00000367526		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000377795	ENST00000480333		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000353334	ENST00000367545		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000353334	ENST00000367526		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000353334	ENST00000480333		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000524315	ENST00000367545		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000524315	ENST00000367526		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000524315	ENST00000480333		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000009530	ENST00000367545		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000009530	ENST00000367526		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
intron-intron	ENST00000009530	ENST00000480333		TCGA	RV	LGG	TCGA-DB-5276-01A	CD74	chr5	149781200	-	UTRN	chr6	144665237	+
In-frame	ENST00000585892	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000585892	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000314646	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000359692	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000389253	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000355667	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000408974	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000592685		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000380702		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000352831		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000293683		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000440014		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000591819	ENST00000344979		TCGA	RV	LGG	TCGA-DB-A4XB-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000527706	ENST00000278937		TCGA	RV	LGG	TCGA-HT-8015-01B	DSCAML1	chr11	117647506	-	MPZL2	chr11	118133812	-
intron-3CDS	ENST00000527706	ENST00000438295		TCGA	RV	LGG	TCGA-HT-8015-01B	DSCAML1	chr11	117647506	-	MPZL2	chr11	118133812	-
intron-5UTR	ENST00000527706	ENST00000525647		TCGA	RV	LGG	TCGA-HT-8015-01B	DSCAML1	chr11	117647506	-	MPZL2	chr11	118133812	-
Frame-shit	ENST00000321322	ENST00000278937		TCGA	RV	LGG	TCGA-HT-8015-01B	DSCAML1	chr11	117647506	-	MPZL2	chr11	118133812	-
In-frame	ENST00000321322	ENST00000438295		TCGA	RV	LGG	TCGA-HT-8015-01B	DSCAML1	chr11	117647506	-	MPZL2	chr11	118133812	-
5CDS-5UTR	ENST00000321322	ENST00000525647		TCGA	RV	LGG	TCGA-HT-8015-01B	DSCAML1	chr11	117647506	-	MPZL2	chr11	118133812	-
intron-3CDS	ENST00000378036	ENST00000324631		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000377328		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000352115		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000282343		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000377331		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000396576		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000377319		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000377329		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-3CDS	ENST00000378036	ENST00000377315		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
intron-intron	ENST00000378036	ENST00000467034		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000324631		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000377328		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000352115		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000282343		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000377331		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000396576		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000377319		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000377329		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-3CDS	ENST00000477891	ENST00000377315		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5UTR-intron	ENST00000477891	ENST00000467034		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000324631		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000377328		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000352115		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000282343		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000377331		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000396576		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000377319		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000377329		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
In-frame	ENST00000277632	ENST00000377315		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
5CDS-intron	ENST00000277632	ENST00000467034		TCGA	RV	LGG	TCGA-DB-A4XE-01A	FAM188A	chr10	15902205	-	CACNB2	chr10	18787284	+
Frame-shit	ENST00000445105	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000445105	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000445105	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
Frame-shit	ENST00000264730	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000264730	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000264730	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-3CDS	ENST00000454309	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-5UTR	ENST00000454309	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
intron-intron	ENST00000454309	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
In-frame	ENST00000450716	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000450716	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000450716	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
Frame-shit	ENST00000430714	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-5UTR	ENST00000430714	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5CDS-intron	ENST00000430714	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-3CDS	ENST00000466144	ENST00000265598		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-5UTR	ENST00000466144	ENST00000466939		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-intron	ENST00000466144	ENST00000486686		TCGA	RV	LGG	TCGA-FG-5963-02A	FGF12	chr3	192444970	-	LAMP3	chr3	182872179	-
5UTR-3CDS	ENST00000299293	ENST00000398016		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000299293	ENST00000359742		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000299293	ENST00000286445		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-5UTR	ENST00000299293	ENST00000542021		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000549921	ENST00000398016		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000549921	ENST00000359742		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000549921	ENST00000286445		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-5UTR	ENST00000549921	ENST00000542021		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000550389	ENST00000398016		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000550389	ENST00000359742		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-3CDS	ENST00000550389	ENST00000286445		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
5UTR-5UTR	ENST00000550389	ENST00000542021		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
intron-3CDS	ENST00000397997	ENST00000398016		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
intron-3CDS	ENST00000397997	ENST00000359742		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
intron-3CDS	ENST00000397997	ENST00000286445		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
intron-5UTR	ENST00000397997	ENST00000542021		TCGA	RV	LGG	TCGA-DU-A5TY-01A	FRS2	chr12	69864310	+	GRIP1	chr12	66800208	-
In-frame	ENST00000307363	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000307363	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000399402	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000445488	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3UTR	ENST00000307377	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3UTR	ENST00000497796	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-01A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000369851	ENST00000527748		TCGA	RV	LGG	TCGA-QH-A6CV-01A	GNAI3	chr1	110091460	+	GPR61	chr1	110087933	+
5CDS-intron	ENST00000369851	ENST00000533959		TCGA	RV	LGG	TCGA-QH-A6CV-01A	GNAI3	chr1	110091460	+	GPR61	chr1	110087933	+
5UTR-3CDS	ENST00000382159	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	GNG7	chr19	2646222	-	TACC3	chr4	1741429	+
5CDS-5UTR	ENST00000367265	ENST00000271469		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-5UTR	ENST00000367265	ENST00000367926		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-intron	ENST00000367265	ENST00000476240		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-intron	ENST00000367265	ENST00000367924		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-intron	ENST00000367265	ENST00000367925		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-5UTR	ENST00000367264	ENST00000271469		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-5UTR	ENST00000367264	ENST00000367926		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-intron	ENST00000367264	ENST00000476240		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-intron	ENST00000367264	ENST00000367924		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
5CDS-intron	ENST00000367264	ENST00000367925		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
intron-5UTR	ENST00000456180	ENST00000271469		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
intron-5UTR	ENST00000456180	ENST00000367926		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
intron-intron	ENST00000456180	ENST00000476240		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
intron-intron	ENST00000456180	ENST00000367924		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
intron-intron	ENST00000456180	ENST00000367925		TCGA	RV	LGG	TCGA-DU-6542-01A	KDM5B	chr1	202777230	-	UAP1	chr1	162535802	+
Frame-shit	ENST00000370888	ENST00000269886		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370888	ENST00000598564		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370888	ENST00000417295		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370882	ENST00000269886		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370882	ENST00000598564		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370882	ENST00000417295		TCGA	RV	LGG	TCGA-TM-A7CF-01A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000579585	ENST00000424789		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000579585	ENST00000389520		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000584573	ENST00000424789		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000584573	ENST00000389520		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000361733	ENST00000424789		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000361733	ENST00000389520		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000361357	ENST00000424789		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000361357	ENST00000389520		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000577395	ENST00000424789		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
Frame-shit	ENST00000577395	ENST00000389520		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
intron-3CDS	ENST00000577784	ENST00000424789		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
intron-3CDS	ENST00000577784	ENST00000389520		TCGA	RV	LGG	TCGA-FG-A87Q-01A	MAP3K3	chr17	61744420	+	TANC2	chr17	61465996	+
In-frame	ENST00000344191	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000344191	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000344191	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000351017	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000351017	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000351017	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000392108	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000392108	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000392108	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000392112	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000392112	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000392112	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000366806	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000366806	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000366806	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000447894	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000447894	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000447894	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000400822	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
In-frame	ENST00000400822	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000400822	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
intron-3CDS	ENST00000507679	ENST00000367469		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
intron-3CDS	ENST00000507679	ENST00000367467		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
intron-intron	ENST00000507679	ENST00000470750		TCGA	RV	LGG	TCGA-HT-A5RC-01A	MLLT4	chr6	168281197	+	SASH1	chr6	148711270	+
Frame-shit	ENST00000219066	ENST00000396439		TCGA	RV	LGG	TCGA-TM-A84I-01A	NTHL1	chr16	2097710	-	KLRC3	chr12	10565215	-
Frame-shit	ENST00000219066	ENST00000381904		TCGA	RV	LGG	TCGA-TM-A84I-01A	NTHL1	chr16	2097710	-	KLRC3	chr12	10565215	-
5CDS-intron	ENST00000219066	ENST00000381903		TCGA	RV	LGG	TCGA-TM-A84I-01A	NTHL1	chr16	2097710	-	KLRC3	chr12	10565215	-
intron-3CDS	ENST00000562951	ENST00000396439		TCGA	RV	LGG	TCGA-TM-A84I-01A	NTHL1	chr16	2097710	-	KLRC3	chr12	10565215	-
intron-3CDS	ENST00000562951	ENST00000381904		TCGA	RV	LGG	TCGA-TM-A84I-01A	NTHL1	chr16	2097710	-	KLRC3	chr12	10565215	-
intron-intron	ENST00000562951	ENST00000381903		TCGA	RV	LGG	TCGA-TM-A84I-01A	NTHL1	chr16	2097710	-	KLRC3	chr12	10565215	-
5UTR-3CDS	ENST00000514888	ENST00000257290		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
5UTR-intron	ENST00000514888	ENST00000508170		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
Frame-shit	ENST00000264221	ENST00000257290		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
5CDS-intron	ENST00000264221	ENST00000508170		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
Frame-shit	ENST00000399688	ENST00000257290		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
5CDS-intron	ENST00000399688	ENST00000508170		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
Frame-shit	ENST00000512576	ENST00000257290		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
5CDS-intron	ENST00000512576	ENST00000508170		TCGA	RV	LGG	TCGA-E1-A7YD-01A	PAICS	chr4	57302494	+	PDGFRA	chr4	55136800	+
In-frame	ENST00000284770	ENST00000290974		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
In-frame	ENST00000284770	ENST00000511071		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-5UTR	ENST00000284770	ENST00000515312		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-5UTR	ENST00000284770	ENST00000515169		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284770	ENST00000509171		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284770	ENST00000503000		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284770	ENST00000508471		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284770	ENST00000505421		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
In-frame	ENST00000284771	ENST00000290974		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
In-frame	ENST00000284771	ENST00000511071		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-5UTR	ENST00000284771	ENST00000515312		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-5UTR	ENST00000284771	ENST00000515169		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284771	ENST00000509171		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284771	ENST00000503000		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284771	ENST00000508471		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284771	ENST00000505421		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
In-frame	ENST00000284767	ENST00000290974		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
In-frame	ENST00000284767	ENST00000511071		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-5UTR	ENST00000284767	ENST00000515312		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-5UTR	ENST00000284767	ENST00000515169		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284767	ENST00000509171		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284767	ENST00000503000		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284767	ENST00000508471		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
5CDS-intron	ENST00000284767	ENST00000505421		TCGA	RV	LGG	TCGA-DH-A669-01A	PDLIM3	chr4	186456496	-	ZFYVE28	chr4	2355800	-
In-frame	ENST00000265849	ENST00000409508		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
In-frame	ENST00000265849	ENST00000328843		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
5CDS-intron	ENST00000265849	ENST00000465593		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
intron-3CDS	ENST00000441476	ENST00000409508		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
intron-3CDS	ENST00000441476	ENST00000328843		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
intron-intron	ENST00000441476	ENST00000465593		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
In-frame	ENST00000382321	ENST00000409508		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
In-frame	ENST00000382321	ENST00000328843		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
5CDS-intron	ENST00000382321	ENST00000465593		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
In-frame	ENST00000406569	ENST00000409508		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
In-frame	ENST00000406569	ENST00000328843		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
5CDS-intron	ENST00000406569	ENST00000465593		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
5UTR-3CDS	ENST00000469652	ENST00000409508		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
5UTR-3CDS	ENST00000469652	ENST00000328843		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
5UTR-intron	ENST00000469652	ENST00000465593		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PMS2	chr7	6048628	-	DNAH11	chr7	21813384	+
intron-3CDS	ENST00000374761	ENST00000440023		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
intron-3CDS	ENST00000374761	ENST00000370274		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
In-frame	ENST00000290101	ENST00000440023		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
In-frame	ENST00000290101	ENST00000370274		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
intron-3CDS	ENST00000374763	ENST00000440023		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
intron-3CDS	ENST00000374763	ENST00000370274		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
5UTR-3CDS	ENST00000374765	ENST00000440023		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
5UTR-3CDS	ENST00000374765	ENST00000370274		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
5UTR-3CDS	ENST00000542643	ENST00000440023		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
5UTR-3CDS	ENST00000542643	ENST00000370274		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
5UTR-3CDS	ENST00000374757	ENST00000440023		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
5UTR-3CDS	ENST00000374757	ENST00000370274		TCGA	RV	LGG	TCGA-KT-A7W1-01A	RAP1GAP	chr1	21976254	-	NSDHL	chrX	152027314	+
intron-3CDS	ENST00000535829	ENST00000228799		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
intron-intron	ENST00000535829	ENST00000419778		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
intron-5UTR	ENST00000535829	ENST00000542548		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
intron-intron	ENST00000535829	ENST00000545509		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-3CDS	ENST00000357529	ENST00000228799		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-intron	ENST00000357529	ENST00000419778		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-5UTR	ENST00000357529	ENST00000542548		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-intron	ENST00000357529	ENST00000545509		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
3UTR-3CDS	ENST00000299673	ENST00000228799		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
3UTR-intron	ENST00000299673	ENST00000419778		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
3UTR-5UTR	ENST00000299673	ENST00000542548		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
3UTR-intron	ENST00000299673	ENST00000545509		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-3CDS	ENST00000538135	ENST00000228799		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-intron	ENST00000538135	ENST00000419778		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-5UTR	ENST00000538135	ENST00000542548		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-intron	ENST00000538135	ENST00000545509		TCGA	RV	LGG	TCGA-E1-5304-01A	RIMKLB	chr12	8853210	+	ITFG2	chr12	2926389	+
5UTR-3CDS	ENST00000543885	ENST00000301202		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
5UTR-3CDS	ENST00000543885	ENST00000351841		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000269439	ENST00000301202		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000269439	ENST00000351841		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000587853	ENST00000301202		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000587853	ENST00000351841		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000590330	ENST00000301202		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000590330	ENST00000351841		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
Frame-shit	ENST00000588679	ENST00000301202		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
Frame-shit	ENST00000588679	ENST00000351841		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RNF165	chr18	43914298	+	LAIR2	chr19	55014916	+
In-frame	ENST00000401642	ENST00000248701		TCGA	RV	LGG	TCGA-HT-7477-01B	SCFD2	chr4	54011500	-	SPINK2	chr4	57686745	-
In-frame	ENST00000401642	ENST00000506738		TCGA	RV	LGG	TCGA-HT-7477-01B	SCFD2	chr4	54011500	-	SPINK2	chr4	57686745	-
In-frame	ENST00000401642	ENST00000504762		TCGA	RV	LGG	TCGA-HT-7477-01B	SCFD2	chr4	54011500	-	SPINK2	chr4	57686745	-
In-frame	ENST00000388940	ENST00000248701		TCGA	RV	LGG	TCGA-HT-7477-01B	SCFD2	chr4	54011500	-	SPINK2	chr4	57686745	-
In-frame	ENST00000388940	ENST00000506738		TCGA	RV	LGG	TCGA-HT-7477-01B	SCFD2	chr4	54011500	-	SPINK2	chr4	57686745	-
In-frame	ENST00000388940	ENST00000504762		TCGA	RV	LGG	TCGA-HT-7477-01B	SCFD2	chr4	54011500	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000318445	ENST00000394272		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
Frame-shit	ENST00000318445	ENST00000330334		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
Frame-shit	ENST00000318445	ENST00000559898		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
Frame-shit	ENST00000424469	ENST00000394272		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
Frame-shit	ENST00000424469	ENST00000330334		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
Frame-shit	ENST00000424469	ENST00000559898		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
intron-3CDS	ENST00000555549	ENST00000394272		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
intron-3CDS	ENST00000555549	ENST00000330334		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
intron-3CDS	ENST00000555549	ENST00000559898		TCGA	RV	LGG	TCGA-DB-5277-01A	SLCO3A1	chr15	92397318	+	HDDC3	chr15	91475340	-
In-frame	ENST00000260197	ENST00000368301		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000361308		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000347559		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000368300		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000368299		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000448611		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000368297		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000473598		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
In-frame	ENST00000260197	ENST00000392353		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
5CDS-intron	ENST00000260197	ENST00000496738		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000368301		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000361308		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000347559		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000368300		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000368299		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000448611		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000368297		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000473598		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-3CDS	ENST00000532451	ENST00000392353		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
3UTR-intron	ENST00000532451	ENST00000496738		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000368301		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000361308		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000347559		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000368300		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000368299		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000448611		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000368297		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000473598		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000525532	ENST00000392353		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-intron	ENST00000525532	ENST00000496738		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000368301		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000361308		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000347559		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000368300		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000368299		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000448611		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000368297		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000473598		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000532694	ENST00000392353		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-intron	ENST00000532694	ENST00000496738		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000368301		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000361308		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000347559		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000368300		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000368299		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000448611		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000368297		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000473598		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000534286	ENST00000392353		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-intron	ENST00000534286	ENST00000496738		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000368301		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000361308		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000347559		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000368300		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000368299		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000448611		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000368297		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000473598		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-3CDS	ENST00000527934	ENST00000392353		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
intron-intron	ENST00000527934	ENST00000496738		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	LMNA	chr1	156104194	+
5CDS-intron	ENST00000260197	ENST00000537040		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000260197	ENST00000451864		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000260197	ENST00000400992		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000260197	ENST00000368246		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000260197	ENST00000255013		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000260197	ENST00000368249		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-3UTR	ENST00000260197	ENST00000494874		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-intron	ENST00000532451	ENST00000537040		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-intron	ENST00000532451	ENST00000451864		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-intron	ENST00000532451	ENST00000400992		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-intron	ENST00000532451	ENST00000368246		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-intron	ENST00000532451	ENST00000255013		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-intron	ENST00000532451	ENST00000368249		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
3UTR-3UTR	ENST00000532451	ENST00000494874		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000525532	ENST00000537040		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000525532	ENST00000451864		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000525532	ENST00000400992		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000525532	ENST00000368246		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000525532	ENST00000255013		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000525532	ENST00000368249		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-3UTR	ENST00000525532	ENST00000494874		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000532694	ENST00000537040		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000532694	ENST00000451864		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000532694	ENST00000400992		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000532694	ENST00000368246		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000532694	ENST00000255013		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000532694	ENST00000368249		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-3UTR	ENST00000532694	ENST00000494874		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000534286	ENST00000537040		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000534286	ENST00000451864		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000534286	ENST00000400992		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000534286	ENST00000368246		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000534286	ENST00000255013		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000534286	ENST00000368249		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-3UTR	ENST00000534286	ENST00000494874		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000527934	ENST00000537040		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000527934	ENST00000451864		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000527934	ENST00000400992		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000527934	ENST00000368246		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000527934	ENST00000255013		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-intron	ENST00000527934	ENST00000368249		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
intron-3UTR	ENST00000527934	ENST00000494874		TCGA	RV	LGG	TCGA-TM-A84J-01A	SORL1	chr11	121367758	+	RHBG	chr1	156352539	+
5CDS-5UTR	ENST00000546136	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000546136	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000546136	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000381381	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000381381	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000381381	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000309359	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000309359	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000309359	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000451604	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000451604	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000451604	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000537393	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000537393	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000537393	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000541536	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000541536	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000541536	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000396007	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000396007	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-intron	ENST00000396007	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000545921	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000545921	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000545921	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000541847	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000541847	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-intron	ENST00000541847	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000441133	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000441133	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-intron	ENST00000441133	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000536850	ENST00000535902		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000536850	ENST00000396349		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
intron-intron	ENST00000536850	ENST00000545735		TCGA	RV	LGG	TCGA-DU-7007-01A	SOX5	chr12	23757321	-	MANSC1	chr12	12496348	-
Frame-shit	ENST00000433529	ENST00000379666		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000433529	ENST00000296102		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
5CDS-3UTR	ENST00000433529	ENST00000483992		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000415783	ENST00000379666		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000415783	ENST00000296102		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
5CDS-3UTR	ENST00000415783	ENST00000483992		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000282574	ENST00000379666		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000282574	ENST00000296102		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
5CDS-3UTR	ENST00000282574	ENST00000483992		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000445587	ENST00000379666		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000445587	ENST00000296102		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
5CDS-3UTR	ENST00000445587	ENST00000483992		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3CDS	ENST00000482876	ENST00000379666		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3CDS	ENST00000482876	ENST00000296102		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3UTR	ENST00000482876	ENST00000483992		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000416149	ENST00000379666		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000416149	ENST00000296102		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
5CDS-3UTR	ENST00000416149	ENST00000483992		TCGA	RV	LGG	TCGA-QH-A6XC-01A	TIA1	chr2	70475537	-	MRPL33	chr2	28002300	+
Frame-shit	ENST00000358901	ENST00000421362		TCGA	RV	LGG	TCGA-E1-5304-01A	VCP	chr9	35072334	-	C9orf131	chr9	35042858	+
Frame-shit	ENST00000358901	ENST00000354479		TCGA	RV	LGG	TCGA-E1-5304-01A	VCP	chr9	35072334	-	C9orf131	chr9	35042858	+
Frame-shit	ENST00000358901	ENST00000312292		TCGA	RV	LGG	TCGA-E1-5304-01A	VCP	chr9	35072334	-	C9orf131	chr9	35042858	+
intron-3CDS	ENST00000508596	ENST00000228740		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000508596	ENST00000552789		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000508596	ENST00000413268		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-intron	ENST00000508596	ENST00000548375		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000393643	ENST00000228740		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000393643	ENST00000552789		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000393643	ENST00000413268		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-intron	ENST00000393643	ENST00000548375		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
Frame-shit	ENST00000280190	ENST00000228740		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
Frame-shit	ENST00000280190	ENST00000552789		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
Frame-shit	ENST00000280190	ENST00000413268		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
5CDS-intron	ENST00000280190	ENST00000548375		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
Frame-shit	ENST00000507824	ENST00000228740		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
Frame-shit	ENST00000507824	ENST00000552789		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
Frame-shit	ENST00000507824	ENST00000413268		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
5CDS-intron	ENST00000507824	ENST00000548375		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000509792	ENST00000228740		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000509792	ENST00000552789		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000509792	ENST00000413268		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-intron	ENST00000509792	ENST00000548375		TCGA	RV	LGG	TCGA-HT-8106-01A	WDR17	chr4	177017736	+	LTA4H	chr12	96413018	-
intron-3CDS	ENST00000535628	ENST00000269500		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000535628	ENST00000419743		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-5UTR	ENST00000535628	ENST00000580806		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000588982	ENST00000269500		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000588982	ENST00000419743		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-5UTR	ENST00000588982	ENST00000580806		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000586438	ENST00000269500		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000586438	ENST00000419743		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-5UTR	ENST00000586438	ENST00000580806		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
5UTR-3CDS	ENST00000590800	ENST00000269500		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
5UTR-3CDS	ENST00000590800	ENST00000419743		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
5UTR-5UTR	ENST00000590800	ENST00000580806		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000332053	ENST00000269500		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-3CDS	ENST00000332053	ENST00000419743		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
intron-5UTR	ENST00000332053	ENST00000580806		TCGA	RV	LGG	TCGA-CS-6666-01A	ZBTB7C	chr18	45864545	-	FBXO15	chr18	71740965	-
5UTR-3CDS	ENST00000537645	ENST00000255224		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57791492	+	SYT4	chr18	40854359	-
5UTR-intron	ENST00000537645	ENST00000586678		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57791492	+	SYT4	chr18	40854359	-
5UTR-intron	ENST00000537645	ENST00000590752		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57791492	+	SYT4	chr18	40854359	-
intron-3CDS	ENST00000360338	ENST00000255224		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57791492	+	SYT4	chr18	40854359	-
intron-intron	ENST00000360338	ENST00000586678		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57791492	+	SYT4	chr18	40854359	-
intron-intron	ENST00000360338	ENST00000590752		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57791492	+	SYT4	chr18	40854359	-
5UTR-3CDS	ENST00000485702	ENST00000262895		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
5UTR-3CDS	ENST00000485702	ENST00000593562		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
5UTR-3CDS	ENST00000485702	ENST00000301218		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
In-frame	ENST00000412216	ENST00000262895		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
In-frame	ENST00000412216	ENST00000593562		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
In-frame	ENST00000412216	ENST00000301218		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
Frame-shit	ENST00000301399	ENST00000262895		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
Frame-shit	ENST00000301399	ENST00000593562		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
Frame-shit	ENST00000301399	ENST00000301218		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
In-frame	ENST00000420592	ENST00000262895		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
In-frame	ENST00000420592	ENST00000593562		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
In-frame	ENST00000420592	ENST00000301218		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
Frame-shit	ENST00000451628	ENST00000262895		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
Frame-shit	ENST00000451628	ENST00000593562		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
Frame-shit	ENST00000451628	ENST00000301218		TCGA	RV	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42526506	-
5CDS-intron	ENST00000304166	ENST00000264818		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000304166	ENST00000524462		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000304166	ENST00000525621		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000304166	ENST00000529370		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000304166	ENST00000529422		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409363	ENST00000264818		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409363	ENST00000524462		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409363	ENST00000525621		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409363	ENST00000529370		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409363	ENST00000529422		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000396211	ENST00000264818		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000396211	ENST00000524462		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000396211	ENST00000525621		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000396211	ENST00000529370		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000396211	ENST00000529422		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409489	ENST00000264818		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409489	ENST00000524462		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409489	ENST00000525621		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409489	ENST00000529370		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409489	ENST00000529422		TCGA	RV	LGG	TCGA-QH-A6CZ-01A	ADCYAP1R1	chr7	31151089	+	TYK2	chr19	10491352	-
Frame-shit	ENST00000347464	ENST00000264051		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000347464	ENST00000373552		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000347464	ENST00000539537		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000347464	ENST00000409079		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000392017	ENST00000264051		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000392017	ENST00000373552		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000392017	ENST00000539537		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000392017	ENST00000409079		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000373525	ENST00000264051		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000373525	ENST00000373552		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000373525	ENST00000539537		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000373525	ENST00000409079		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000392020	ENST00000264051		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000392020	ENST00000373552		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000392020	ENST00000539537		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000392020	ENST00000409079		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000392018	ENST00000264051		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
Frame-shit	ENST00000392018	ENST00000373552		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000392018	ENST00000539537		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5CDS-intron	ENST00000392018	ENST00000409079		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
intron-3CDS	ENST00000498620	ENST00000264051		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
intron-3CDS	ENST00000498620	ENST00000373552		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
intron-intron	ENST00000498620	ENST00000539537		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
intron-intron	ENST00000498620	ENST00000409079		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	ATG16L1	chr2	234202003	+	NGEF	chr2	233785295	-
5UTR-3CDS	ENST00000257749	ENST00000369325		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000257749	ENST00000369327		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000257749	ENST00000369332		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000257749	ENST00000369329		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000257749	ENST00000479630		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000257749	ENST00000369320		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000537989	ENST00000369325		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000537989	ENST00000369327		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000537989	ENST00000369332		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000537989	ENST00000369329		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000537989	ENST00000479630		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000537989	ENST00000369320		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000343122	ENST00000369325		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000343122	ENST00000369327		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000343122	ENST00000369332		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000343122	ENST00000369329		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000343122	ENST00000479630		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000343122	ENST00000369320		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000470301	ENST00000369325		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000470301	ENST00000369327		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000470301	ENST00000369332		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-3CDS	ENST00000470301	ENST00000369329		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000470301	ENST00000479630		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
5UTR-intron	ENST00000470301	ENST00000369320		TCGA	RV	LGG	TCGA-DU-6403-01A	BACH2	chr6	90916288	-	MAP3K7	chr6	91281526	-
intron-3CDS	ENST00000548411	ENST00000331737		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000548411	ENST00000361310		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000548411	ENST00000413025		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000548411	ENST00000436087		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000548411	ENST00000452305		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000548411	ENST00000442986		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000548411	ENST00000538351		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000548411	ENST00000375311		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000548411	ENST00000444692		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000331737		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000361310		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000413025		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000436087		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000452305		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000442986		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000281474	ENST00000538351		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
5CDS-5UTR	ENST00000281474	ENST00000375311		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
5CDS-5UTR	ENST00000281474	ENST00000444692		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000331737		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000361310		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000413025		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000436087		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000452305		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000442986		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551848	ENST00000538351		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000551848	ENST00000375311		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000551848	ENST00000444692		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000331737		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000361310		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000413025		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000436087		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000452305		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000442986		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000550207	ENST00000538351		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000550207	ENST00000375311		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000550207	ENST00000444692		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000331737		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000361310		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000413025		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000436087		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000452305		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000442986		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-3CDS	ENST00000551086	ENST00000538351		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000551086	ENST00000375311		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
intron-5UTR	ENST00000551086	ENST00000444692		TCGA	RV	LGG	TCGA-DB-5277-01A	BICD1	chr12	32491913	+	ZNF438	chr10	31138372	-
In-frame	ENST00000274458	ENST00000316788		TCGA	RV	LGG	TCGA-DH-A7US-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000274458	ENST00000505423		TCGA	RV	LGG	TCGA-DH-A7US-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000515539	ENST00000316788		TCGA	RV	LGG	TCGA-DH-A7US-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000515539	ENST00000505423		TCGA	RV	LGG	TCGA-DH-A7US-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-3CDS	ENST00000503424	ENST00000316788		TCGA	RV	LGG	TCGA-DH-A7US-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-3CDS	ENST00000503424	ENST00000505423		TCGA	RV	LGG	TCGA-DH-A7US-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-5UTR	ENST00000535699	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000535699	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000535699	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000538660	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000538660	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000538660	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000367400	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000367400	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000367400	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000367399	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000367399	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000367399	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000543483	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000543483	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000543483	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000544212	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000544212	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000544212	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000367397	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000367397	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000367397	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000476483	ENST00000295591		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000476483	ENST00000335211		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000476483	ENST00000451870		TCGA	RV	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201162375	+
5CDS-intron	ENST00000409592	ENST00000465812		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000409592	ENST00000409052		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000409592	ENST00000361779		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000409592	ENST00000259206		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000409592	ENST00000354115		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000409592	ENST00000409930		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-intron	ENST00000258390	ENST00000465812		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000258390	ENST00000409052		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000258390	ENST00000361779		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000258390	ENST00000259206		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000258390	ENST00000354115		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000258390	ENST00000409930		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5UTR-intron	ENST00000474102	ENST00000465812		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5UTR-5UTR	ENST00000474102	ENST00000409052		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5UTR-5UTR	ENST00000474102	ENST00000361779		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5UTR-5UTR	ENST00000474102	ENST00000259206		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5UTR-5UTR	ENST00000474102	ENST00000354115		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
5UTR-5UTR	ENST00000474102	ENST00000409930		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	DOCK10	chr2	225796266	-	IL1RN	chr2	113885266	+
Frame-shit	ENST00000357410	ENST00000373615		TCGA	RV	LGG	TCGA-VM-A8CD-01A	EYA2	chr20	45644936	+	LHX2	chr9	126776240	+
Frame-shit	ENST00000327619	ENST00000373615		TCGA	RV	LGG	TCGA-VM-A8CD-01A	EYA2	chr20	45644936	+	LHX2	chr9	126776240	+
intron-3CDS	ENST00000497428	ENST00000373615		TCGA	RV	LGG	TCGA-VM-A8CD-01A	EYA2	chr20	45644936	+	LHX2	chr9	126776240	+
Frame-shit	ENST00000317304	ENST00000373615		TCGA	RV	LGG	TCGA-VM-A8CD-01A	EYA2	chr20	45644936	+	LHX2	chr9	126776240	+
In-frame	ENST00000309859	ENST00000321728		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
In-frame	ENST00000309859	ENST00000303531		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000309859	ENST00000482000		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000309859	ENST00000498058		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
In-frame	ENST00000567468	ENST00000321728		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
In-frame	ENST00000567468	ENST00000303531		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000567468	ENST00000482000		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000567468	ENST00000498058		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000569182	ENST00000321728		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000569182	ENST00000303531		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
intron-intron	ENST00000569182	ENST00000482000		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
intron-intron	ENST00000569182	ENST00000498058		TCGA	RV	LGG	TCGA-HT-A5RC-01A	GGA2	chr16	23502998	-	PRKCB	chr16	23999829	+
Frame-shit	ENST00000290795	ENST00000425690		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000290795	ENST00000344956		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000290795	ENST00000403059		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000290795	ENST00000406449		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000355105	ENST00000425690		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000355105	ENST00000344956		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000355105	ENST00000403059		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
Frame-shit	ENST00000355105	ENST00000406449		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
intron-3CDS	ENST00000479235	ENST00000425690		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
intron-3CDS	ENST00000479235	ENST00000344956		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
intron-3CDS	ENST00000479235	ENST00000403059		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
intron-3CDS	ENST00000479235	ENST00000406449		TCGA	RV	LGG	TCGA-TM-A7C3-01A	GPBP1L1	chr1	46124700	-	PVR	chr19	45153081	+
5CDS-intron	ENST00000326427	ENST00000264818		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326427	ENST00000524462		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326427	ENST00000525621		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326427	ENST00000529370		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326427	ENST00000529422		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000335005	ENST00000264818		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000335005	ENST00000524462		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000335005	ENST00000525621		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000335005	ENST00000529370		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000335005	ENST00000529422		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326407	ENST00000264818		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326407	ENST00000524462		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326407	ENST00000525621		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326407	ENST00000529370		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000326407	ENST00000529422		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409704	ENST00000264818		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409704	ENST00000524462		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409704	ENST00000525621		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409704	ENST00000529370		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000409704	ENST00000529422		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492029	ENST00000264818		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492029	ENST00000524462		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492029	ENST00000525621		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492029	ENST00000529370		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492029	ENST00000529422		TCGA	RV	LGG	TCGA-HT-7470-01A	ITM2C	chr2	231743962	+	TYK2	chr19	10491352	-
In-frame	ENST00000297591	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000297591	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000297591	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000297591	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000437199	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000437199	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000437199	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000421249	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000421249	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000421249	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-intron	ENST00000523405	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-intron	ENST00000523405	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-intron	ENST00000523405	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000311277	ENST00000355962		TCGA	RV	LGG	TCGA-HT-7857-01A	MAP9	chr4	156281320	-	TAT	chr16	71610330	-
5CDS-5UTR	ENST00000515654	ENST00000355962		TCGA	RV	LGG	TCGA-HT-7857-01A	MAP9	chr4	156281320	-	TAT	chr16	71610330	-
intron-5UTR	ENST00000379248	ENST00000355962		TCGA	RV	LGG	TCGA-HT-7857-01A	MAP9	chr4	156281320	-	TAT	chr16	71610330	-
5CDS-intron	ENST00000351960	ENST00000246548		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000351960	ENST00000439527		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000351960	ENST00000592791		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000351960	ENST00000588585		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000358965	ENST00000246548		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000358965	ENST00000439527		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000358965	ENST00000592791		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000358965	ENST00000588585		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000393695	ENST00000246548		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000393695	ENST00000439527		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000393695	ENST00000592791		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
5CDS-intron	ENST00000393695	ENST00000588585		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
intron-intron	ENST00000543450	ENST00000246548		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
intron-intron	ENST00000543450	ENST00000439527		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
intron-intron	ENST00000543450	ENST00000592791		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
intron-intron	ENST00000543450	ENST00000588585		TCGA	RV	LGG	TCGA-HT-7687-01A	NUMA1	chr11	71713911	-	UBA2	chr19	34919781	+
In-frame	ENST00000335512	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000335512	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000335512	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000335512	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000539837	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000539837	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000539837	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000539837	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
3UTR-3CDS	ENST00000470987	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
3UTR-3CDS	ENST00000470987	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
3UTR-5UTR	ENST00000470987	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
3UTR-intron	ENST00000470987	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000291539	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000291539	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000291539	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000291539	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398236	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398236	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398236	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398236	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398229	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398229	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398229	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398229	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398234	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398234	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398234	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398234	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398232	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398232	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398232	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398232	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398227	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398227	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398227	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398227	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398225	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398225	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398225	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398225	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000380328	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000380328	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000380328	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000380328	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000328862	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000328862	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000328862	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000328862	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000335440	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000335440	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000335440	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000335440	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398224	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000398224	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000398224	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000398224	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000349112	ENST00000216500		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
In-frame	ENST00000349112	ENST00000557185		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-5UTR	ENST00000349112	ENST00000536410		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
5CDS-intron	ENST00000349112	ENST00000553986		TCGA	RV	LGG	TCGA-HT-7603-01A	PDE9A	chr21	44153536	+	DHRS7	chr14	60622870	-
Frame-shit	ENST00000506140	ENST00000382952		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
Frame-shit	ENST00000506140	ENST00000290921		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000506140	ENST00000510568		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000506140	ENST00000515690		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
In-frame	ENST00000515571	ENST00000382952		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
In-frame	ENST00000515571	ENST00000290921		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000515571	ENST00000510568		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000515571	ENST00000515690		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
Frame-shit	ENST00000382599	ENST00000382952		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
Frame-shit	ENST00000382599	ENST00000290921		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000382599	ENST00000510568		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000382599	ENST00000515690		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
In-frame	ENST00000507294	ENST00000382952		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
In-frame	ENST00000507294	ENST00000290921		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000507294	ENST00000510568		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000507294	ENST00000515690		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
intron-3CDS	ENST00000314348	ENST00000382952		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
intron-3CDS	ENST00000314348	ENST00000290921		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
intron-intron	ENST00000314348	ENST00000510568		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
intron-intron	ENST00000314348	ENST00000515690		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
Frame-shit	ENST00000335585	ENST00000382952		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
Frame-shit	ENST00000335585	ENST00000290921		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000335585	ENST00000510568		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000335585	ENST00000515690		TCGA	RV	LGG	TCGA-DH-A669-01A	PPP2R2C	chr4	6349573	-	CTBP1	chr4	1207393	-
5CDS-intron	ENST00000332981	ENST00000555545		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000332981	ENST00000261245		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000332981	ENST00000539616		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000555082	ENST00000555545		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000555082	ENST00000261245		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000555082	ENST00000539616		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000556245	ENST00000555545		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000556245	ENST00000261245		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000556245	ENST00000539616		TCGA	RV	LGG	TCGA-TQ-A7RS-01A	PRKCH	chr14	61789182	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000380393	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000380393	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000216877	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000216877	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000358719	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000358719	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000399903	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000399903	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000425918	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000425918	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000318266	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000318266	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000356147	ENST00000216297		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000356147	ENST00000555943		TCGA	RV	LGG	TCGA-CS-6668-01A	PTPRA	chr20	3019314	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000535977	ENST00000423807		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-5UTR	ENST00000535977	ENST00000419060		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000535977	ENST00000543175		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000535977	ENST00000429848		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000539661	ENST00000423807		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-5UTR	ENST00000539661	ENST00000419060		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000539661	ENST00000543175		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000539661	ENST00000429848		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000538492	ENST00000423807		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-5UTR	ENST00000538492	ENST00000419060		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000538492	ENST00000543175		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000538492	ENST00000429848		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000248139	ENST00000423807		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-5UTR	ENST00000248139	ENST00000419060		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000248139	ENST00000543175		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
5CDS-intron	ENST00000248139	ENST00000429848		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130479238	-
Frame-shit	ENST00000335670	ENST00000458420		TCGA	RV	LGG	TCGA-DB-5278-01A	RORA	chr15	61521252	-	CLSTN2	chr3	139894793	+
intron-3CDS	ENST00000309157	ENST00000458420		TCGA	RV	LGG	TCGA-DB-5278-01A	RORA	chr15	61521252	-	CLSTN2	chr3	139894793	+
intron-3CDS	ENST00000261523	ENST00000458420		TCGA	RV	LGG	TCGA-DB-5278-01A	RORA	chr15	61521252	-	CLSTN2	chr3	139894793	+
intron-3CDS	ENST00000449337	ENST00000458420		TCGA	RV	LGG	TCGA-DB-5278-01A	RORA	chr15	61521252	-	CLSTN2	chr3	139894793	+
intron-3CDS	ENST00000560004	ENST00000458420		TCGA	RV	LGG	TCGA-DB-5278-01A	RORA	chr15	61521252	-	CLSTN2	chr3	139894793	+
intron-3CDS	ENST00000546961	ENST00000262053		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
intron-intron	ENST00000546961	ENST00000539132		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
intron-3CDS	ENST00000550891	ENST00000262053		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
intron-intron	ENST00000550891	ENST00000539132		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
In-frame	ENST00000354534	ENST00000262053		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
5CDS-intron	ENST00000354534	ENST00000539132		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
In-frame	ENST00000545061	ENST00000262053		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
5CDS-intron	ENST00000545061	ENST00000539132		TCGA	RV	LGG	TCGA-DH-A66G-01A	SCN8A	chr12	52184286	+	ATF1	chr12	51189692	+
Frame-shit	ENST00000382491	ENST00000335512		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000382491	ENST00000539837		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000470987		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000291539		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398236		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398229		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398234		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398232		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398227		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398225		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000380328		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000328862		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000335440		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000398224		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382491	ENST00000349112		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000357345	ENST00000335512		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000357345	ENST00000539837		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000470987		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000291539		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398236		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398229		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398234		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398232		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398227		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398225		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000380328		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000328862		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000335440		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000398224		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000357345	ENST00000349112		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000382499	ENST00000335512		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000382499	ENST00000539837		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000470987		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000291539		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398236		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398229		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398234		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398232		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398227		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398225		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000380328		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000328862		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000335440		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000398224		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000382499	ENST00000349112		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
In-frame	ENST00000433931	ENST00000335512		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
In-frame	ENST00000433931	ENST00000539837		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000470987		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000291539		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398236		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398229		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398234		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398232		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398227		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398225		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000380328		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000328862		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000335440		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000398224		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000433931	ENST00000349112		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000322229	ENST00000335512		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000322229	ENST00000539837		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000470987		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000291539		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398236		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398229		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398234		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398232		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398227		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398225		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000380328		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000328862		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000335440		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000398224		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000322229	ENST00000349112		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3CDS	ENST00000464778	ENST00000335512		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3CDS	ENST00000464778	ENST00000539837		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000470987		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000291539		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398236		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398229		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398234		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398232		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398227		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398225		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000380328		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000328862		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000335440		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000398224		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000464778	ENST00000349112		TCGA	RV	LGG	TCGA-HT-7603-01A	SYNJ1	chr21	34099083	-	PDE9A	chr21	44163886	+
intron-3CDS	ENST00000539627	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000604123	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
5UTR-3CDS	ENST00000413014	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000392002	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000436170	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000447302	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000544232	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000542945	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000356385	ENST00000221930		TCGA	RV	LGG	TCGA-CS-4944-01A	TMEM91	chr19	41870000	+	TGFB1	chr19	41838186	-
In-frame	ENST00000372067	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000417285	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000324450	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000413642	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000372055	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000482630	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000425836	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000372064	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000372077	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000520948	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000523873	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000523950	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000518689	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000523125	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000457104	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000518824	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000230480	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
5UTR-3CDS	ENST00000430629	ENST00000374076		TCGA	RV	LGG	TCGA-DB-A64O-01A	WASF2	chr1	27816497	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000430629	ENST00000608611		TCGA	RV	LGG	TCGA-DB-A64O-01A	WASF2	chr1	27816497	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000536657	ENST00000374076		TCGA	RV	LGG	TCGA-DB-A64O-01A	WASF2	chr1	27816497	-	TMEM222	chr1	27657211	+
5UTR-3CDS	ENST00000536657	ENST00000608611		TCGA	RV	LGG	TCGA-DB-A64O-01A	WASF2	chr1	27816497	-	TMEM222	chr1	27657211	+
5CDS-5UTR	ENST00000358220	ENST00000231484		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
5CDS-5UTR	ENST00000358220	ENST00000512221		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
intron-5UTR	ENST00000381329	ENST00000231484		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
intron-5UTR	ENST00000381329	ENST00000512221		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
5CDS-5UTR	ENST00000263150	ENST00000231484		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
5CDS-5UTR	ENST00000263150	ENST00000512221		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
intron-5UTR	ENST00000482165	ENST00000231484		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
intron-5UTR	ENST00000482165	ENST00000512221		TCGA	RV	LGG	TCGA-WY-A859-01A	WDR37	chr10	1151207	+	PCDH12	chr5	141337810	-
In-frame	ENST00000308378	ENST00000543418		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000308378	ENST00000392833		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000308378	ENST00000362010		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000308378	ENST00000392832		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000308378	ENST00000469007		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000308378	ENST00000494677		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000308378	ENST00000537559		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000308378	ENST00000468233		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
Frame-shit	ENST00000476376	ENST00000543418		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
Frame-shit	ENST00000476376	ENST00000392833		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
Frame-shit	ENST00000476376	ENST00000362010		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
Frame-shit	ENST00000476376	ENST00000392832		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000476376	ENST00000469007		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000476376	ENST00000494677		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000476376	ENST00000537559		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000476376	ENST00000468233		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000453925	ENST00000543418		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000453925	ENST00000392833		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000453925	ENST00000362010		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
In-frame	ENST00000453925	ENST00000392832		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000453925	ENST00000469007		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000453925	ENST00000494677		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000453925	ENST00000537559		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-intron	ENST00000453925	ENST00000468233		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-3CDS	ENST00000479765	ENST00000543418		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-3CDS	ENST00000479765	ENST00000392833		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-3CDS	ENST00000479765	ENST00000362010		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-3CDS	ENST00000479765	ENST00000392832		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-intron	ENST00000479765	ENST00000469007		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-intron	ENST00000479765	ENST00000494677		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-intron	ENST00000479765	ENST00000537559		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
intron-intron	ENST00000479765	ENST00000468233		TCGA	RV	LGG	TCGA-HT-7470-01A	WDR49	chr3	167277852	-	VEPH1	chr3	157099165	-
5CDS-5UTR	ENST00000376170	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376170	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376170	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376170	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376170	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000359188	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000359188	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000359188	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000359188	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000359188	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376142	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376142	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376142	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376142	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376142	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376139	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376139	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376139	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376139	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376139	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376160	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376160	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376160	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376160	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376160	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376166	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376166	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376166	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376166	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376166	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376138	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376138	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376138	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376138	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376138	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000355394	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000355394	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000355394	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000355394	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000355394	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000490841	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000490841	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000490841	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000490841	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000490841	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376137	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376137	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376137	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376137	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376137	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000346832	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000346832	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000346832	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000346832	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000346832	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000536334	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000536334	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000536334	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000536334	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000536334	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376134	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376134	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376134	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376134	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376134	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376140	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376140	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376140	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376140	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376140	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-5UTR	ENST00000473481	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-5UTR	ENST00000473481	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-intron	ENST00000473481	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-intron	ENST00000473481	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-intron	ENST00000473481	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376170	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376170	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376170	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376170	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376170	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000359188	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000359188	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000359188	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000359188	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000359188	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376142	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376142	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376142	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376142	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376142	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376139	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376139	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376139	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376139	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376139	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376160	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376160	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376160	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376160	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376160	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376166	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376166	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376166	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376166	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376166	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376138	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376138	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376138	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376138	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376138	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000355394	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000355394	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000355394	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000355394	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000355394	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000490841	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000490841	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000490841	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000490841	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000490841	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376137	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376137	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376137	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376137	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376137	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000346832	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000346832	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000346832	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000346832	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000346832	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000536334	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000536334	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000536334	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000536334	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000536334	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376134	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376134	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376134	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376134	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376134	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376140	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-5UTR	ENST00000376140	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376140	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376140	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5CDS-intron	ENST00000376140	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-5UTR	ENST00000473481	ENST00000521578		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-5UTR	ENST00000473481	ENST00000520105		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-intron	ENST00000473481	ENST00000349124		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-intron	ENST00000473481	ENST00000329397		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
5UTR-intron	ENST00000473481	ENST00000524028		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	ABI1	chr10	27112067	-	PTP4A3	chr8	142431488	+
Frame-shit	ENST00000308982	ENST00000511438		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
Frame-shit	ENST00000308982	ENST00000265068		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
5CDS-5UTR	ENST00000308982	ENST00000510149		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
5CDS-5UTR	ENST00000308982	ENST00000515659		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
intron-3CDS	ENST00000511526	ENST00000511438		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
intron-3CDS	ENST00000511526	ENST00000265068		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
intron-5UTR	ENST00000511526	ENST00000510149		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
intron-5UTR	ENST00000511526	ENST00000515659		TCGA	RV	LGG	TCGA-DB-5275-01A	ACAD9	chr3	128598684	+	KIAA1257	chr3	128707761	-
5CDS-3UTR	ENST00000317829	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-3UTR	ENST00000317829	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000317829	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000317829	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000317837	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000317837	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000317837	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000317837	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-3UTR	ENST00000433060	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-3UTR	ENST00000433060	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000433060	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000433060	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000539727	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000539727	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000539727	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000539727	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-01A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-intron	ENST00000356978	ENST00000378746		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000356978	ENST00000378735		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000356978	ENST00000403231		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000356978	ENST00000487055		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000447653	ENST00000378746		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000447653	ENST00000378735		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000447653	ENST00000403231		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000447653	ENST00000487055		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000555132	ENST00000378746		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000555132	ENST00000378735		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000555132	ENST00000403231		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000555132	ENST00000487055		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000553542	ENST00000378746		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000553542	ENST00000378735		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000553542	ENST00000403231		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000553542	ENST00000487055		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000544280	ENST00000378746		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000544280	ENST00000378735		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000544280	ENST00000403231		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-intron	ENST00000544280	ENST00000487055		TCGA	RV	LGG	TCGA-HT-A616-01A	CALM1	chr14	90874605	+	KIF3A	chr5	132035266	-
intron-3CDS	ENST00000292672	ENST00000171214		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CELF5	chr19	3225616	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000292672	ENST00000591589		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CELF5	chr19	3225616	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000541430	ENST00000171214		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CELF5	chr19	3225616	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000541430	ENST00000591589		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CELF5	chr19	3225616	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000588101	ENST00000171214		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CELF5	chr19	3225616	+	RDH8	chr19	10127733	+
intron-3CDS	ENST00000588101	ENST00000591589		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CELF5	chr19	3225616	+	RDH8	chr19	10127733	+
In-frame	ENST00000546361	ENST00000371175		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CHERP	chr19	16652681	-	RHAG	chr6	49587075	-
Frame-shit	ENST00000546361	ENST00000229810		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CHERP	chr19	16652681	-	RHAG	chr6	49587075	-
In-frame	ENST00000198939	ENST00000371175		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CHERP	chr19	16652681	-	RHAG	chr6	49587075	-
Frame-shit	ENST00000198939	ENST00000229810		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CHERP	chr19	16652681	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000544299	ENST00000371175		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CHERP	chr19	16652681	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000544299	ENST00000229810		TCGA	RV	LGG	TCGA-TM-A7CF-01A	CHERP	chr19	16652681	-	RHAG	chr6	49587075	-
3UTR-3CDS	ENST00000483271	ENST00000331110		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000348120		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000366563		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000366564		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000366565		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000446183		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000366562		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000401882		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
3UTR-3CDS	ENST00000483271	ENST00000407727		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000331110		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000348120		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000366563		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000366564		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000366565		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000446183		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000366562		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000401882		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000366513	ENST00000407727		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000331110		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000348120		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000366563		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000366564		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000366565		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000446183		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000366562		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000401882		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
Frame-shit	ENST00000366512	ENST00000407727		TCGA	RV	LGG	TCGA-HT-8108-01A	CNST	chr1	246811339	+	RGS7	chr1	240990472	-
In-frame	ENST00000309117	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000309117	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5CDS-intron	ENST00000309117	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5UTR-3CDS	ENST00000399000	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5UTR-3CDS	ENST00000399000	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5UTR-intron	ENST00000399000	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5UTR-3CDS	ENST00000288304	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5UTR-3CDS	ENST00000288304	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5UTR-intron	ENST00000288304	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000539844	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000539844	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5CDS-intron	ENST00000539844	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000399001	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000399001	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5CDS-intron	ENST00000399001	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000476950	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000476950	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5CDS-intron	ENST00000476950	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000398998	ENST00000282516		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000398998	ENST00000448238		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
5CDS-intron	ENST00000398998	ENST00000504430		TCGA	RV	LGG	TCGA-DU-6406-01A	DSCR3	chr21	38639539	-	NIPBL	chr5	37019413	+
In-frame	ENST00000320631	ENST00000324198		TCGA	RV	LGG	TCGA-HT-7686-01A	EHD1	chr11	64627396	-	ADRBK2	chr22	26057543	+
Frame-shit	ENST00000359393	ENST00000324198		TCGA	RV	LGG	TCGA-HT-7686-01A	EHD1	chr11	64627396	-	ADRBK2	chr22	26057543	+
intron-3CDS	ENST00000488711	ENST00000324198		TCGA	RV	LGG	TCGA-HT-7686-01A	EHD1	chr11	64627396	-	ADRBK2	chr22	26057543	+
3UTR-intron	ENST00000530985	ENST00000527350		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
3UTR-5UTR	ENST00000530985	ENST00000278919		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
3UTR-5UTR	ENST00000530985	ENST00000366139		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
3UTR-5UTR	ENST00000530985	ENST00000524435		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-intron	ENST00000343678	ENST00000527350		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-5UTR	ENST00000343678	ENST00000278919		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-5UTR	ENST00000343678	ENST00000366139		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-5UTR	ENST00000343678	ENST00000524435		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-intron	ENST00000278903	ENST00000527350		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-5UTR	ENST00000278903	ENST00000278919		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-5UTR	ENST00000278903	ENST00000366139		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
5CDS-5UTR	ENST00000278903	ENST00000524435		TCGA	RV	LGG	TCGA-E1-A7YW-01A	EI24	chr11	125442465	+	FEZ1	chr11	125359718	-
In-frame	ENST00000263253	ENST00000378455		TCGA	RV	LGG	TCGA-DU-6404-01A	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
In-frame	ENST00000263253	ENST00000342274		TCGA	RV	LGG	TCGA-DU-6404-01A	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000378463		TCGA	RV	LGG	TCGA-DU-6404-01A	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000397354		TCGA	RV	LGG	TCGA-DU-6404-01A	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000378444		TCGA	RV	LGG	TCGA-DU-6404-01A	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5UTR-3UTR	ENST00000489884	ENST00000455502		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5UTR-3UTR	ENST00000489884	ENST00000248572		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5UTR-3UTR	ENST00000489884	ENST00000429473		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5UTR-intron	ENST00000489884	ENST00000430875		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5UTR-intron	ENST00000489884	ENST00000428834		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
intron-3UTR	ENST00000540185	ENST00000455502		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
intron-3UTR	ENST00000540185	ENST00000248572		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
intron-3UTR	ENST00000540185	ENST00000429473		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
intron-intron	ENST00000540185	ENST00000430875		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
intron-intron	ENST00000540185	ENST00000428834		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000353841	ENST00000455502		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000353841	ENST00000248572		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000353841	ENST00000429473		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-intron	ENST00000353841	ENST00000430875		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-intron	ENST00000353841	ENST00000428834		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000297532	ENST00000455502		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000297532	ENST00000248572		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000297532	ENST00000429473		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-intron	ENST00000297532	ENST00000430875		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-intron	ENST00000297532	ENST00000428834		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000482571	ENST00000455502		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000482571	ENST00000248572		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-3UTR	ENST00000482571	ENST00000429473		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-intron	ENST00000482571	ENST00000430875		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
5CDS-intron	ENST00000482571	ENST00000428834		TCGA	RV	LGG	TCGA-S9-A89Z-01A	FASTK	chr7	150774397	-	GNGT1	chr7	93540102	+
intron-intron	ENST00000358621	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000358621	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-5UTR	ENST00000358621	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000357447	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000357447	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-5UTR	ENST00000357447	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000378503	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000378503	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-5UTR	ENST00000378503	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
5CDS-intron	ENST00000342409	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
5CDS-intron	ENST00000342409	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
5CDS-5UTR	ENST00000342409	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000493380	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000493380	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-5UTR	ENST00000493380	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000475141	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000475141	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-5UTR	ENST00000475141	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000492155	ENST00000536058		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-intron	ENST00000492155	ENST00000553795		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
intron-5UTR	ENST00000492155	ENST00000374401		TCGA	RV	LGG	TCGA-DU-6403-01A	FRMD4A	chr10	14050059	-	OR13A1	chr10	45799948	-
Frame-shit	ENST00000539526	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000539526	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000539526	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000539526	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000539526	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000539526	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000539526	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000539526	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000540359	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000540359	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000540359	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000540359	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000540359	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000540359	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000540359	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000540359	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000260282	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000260282	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000260282	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000260282	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000260282	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000260282	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000260282	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000260282	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000527717	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000527717	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000527717	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
Frame-shit	ENST00000527717	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000527717	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000527717	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000527717	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
5CDS-intron	ENST00000527717	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000526014	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000526014	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000526014	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000526014	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000526014	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000526014	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000526014	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000526014	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000524656	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000524656	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000524656	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000524656	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000524656	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000524656	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000524656	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000524656	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584394	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584394	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584394	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584394	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584394	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584394	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584394	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584394	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000529335	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000529335	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000529335	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000529335	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000529335	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000529335	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000529335	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000529335	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000583233	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000583233	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000583233	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000583233	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000583233	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000583233	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000583233	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000583233	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000527429	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000527429	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000527429	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000527429	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000527429	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000527429	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000527429	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000527429	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000530956	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000530956	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000530956	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000530956	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000530956	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000530956	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000530956	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000530956	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584230	ENST00000558170		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584230	ENST00000409487		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584230	ENST00000303660		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000584230	ENST00000539609		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584230	ENST00000493689		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584230	ENST00000470879		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584230	ENST00000465070		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-intron	ENST00000584230	ENST00000462355		TCGA	RV	LGG	TCGA-FG-6691-01A	FXYD6	chr11	117707696	-	ZEB2	chr2	145157837	-
intron-3CDS	ENST00000331872	ENST00000519716		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000331872	ENST00000252773		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000331872	ENST00000428389		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000331872	ENST00000551649		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000331872	ENST00000552293		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000331872	ENST00000550896		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000417584	ENST00000519716		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000417584	ENST00000252773		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000417584	ENST00000428389		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000417584	ENST00000551649		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000417584	ENST00000552293		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000417584	ENST00000550896		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000311223	ENST00000519716		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000311223	ENST00000252773		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000311223	ENST00000428389		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000311223	ENST00000551649		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000311223	ENST00000552293		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
intron-3CDS	ENST00000311223	ENST00000550896		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000491322	ENST00000519716		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000491322	ENST00000252773		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000491322	ENST00000428389		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000491322	ENST00000551649		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000491322	ENST00000552293		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000491322	ENST00000550896		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000339526	ENST00000519716		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000339526	ENST00000252773		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000339526	ENST00000428389		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000339526	ENST00000551649		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000339526	ENST00000552293		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
Frame-shit	ENST00000339526	ENST00000550896		TCGA	RV	LGG	TCGA-HT-7608-01A	GLUL	chr1	182352029	-	UNC13A	chr19	17786850	-
5CDS-5UTR	ENST00000396573	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396573	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396573	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396573	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396573	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-intron	ENST00000396573	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000562109	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000562109	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000562109	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000562109	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000562109	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-intron	ENST00000562109	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000535259	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000535259	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000535259	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000535259	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000535259	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-intron	ENST00000535259	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000404927	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000404927	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000404927	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000404927	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000404927	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-intron	ENST00000404927	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000330684	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000330684	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000330684	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000330684	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000330684	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-intron	ENST00000330684	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396575	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396575	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396575	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396575	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-5UTR	ENST00000396575	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
5CDS-intron	ENST00000396575	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000566670	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000566670	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000566670	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000566670	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-5UTR	ENST00000566670	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-intron	ENST00000566670	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	GRIN2A	chr16	10273855	-	RASSF8	chr12	26208212	+
intron-intron	ENST00000263409	ENST00000426128		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-5UTR	ENST00000263409	ENST00000388728		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-5UTR	ENST00000263409	ENST00000257694		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-5UTR	ENST00000263409	ENST00000422087		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000263409	ENST00000453144		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000263409	ENST00000436062		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000263409	ENST00000483879		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-intron	ENST00000453190	ENST00000426128		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-5UTR	ENST00000453190	ENST00000388728		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-5UTR	ENST00000453190	ENST00000257694		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-5UTR	ENST00000453190	ENST00000422087		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-intron	ENST00000453190	ENST00000453144		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-intron	ENST00000453190	ENST00000436062		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
5UTR-intron	ENST00000453190	ENST00000483879		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000503088	ENST00000426128		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-5UTR	ENST00000503088	ENST00000388728		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-5UTR	ENST00000503088	ENST00000257694		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-5UTR	ENST00000503088	ENST00000422087		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000503088	ENST00000453144		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000503088	ENST00000436062		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
intron-intron	ENST00000503088	ENST00000483879		TCGA	RV	LGG	TCGA-DU-7006-01A	LIFR	chr5	38556436	-	PNPLA8	chr7	108161965	-
Frame-shit	ENST00000370888	ENST00000269886		TCGA	RV	LGG	TCGA-TM-A7CF-02A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370888	ENST00000598564		TCGA	RV	LGG	TCGA-TM-A7CF-02A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370888	ENST00000417295		TCGA	RV	LGG	TCGA-TM-A7CF-02A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370882	ENST00000269886		TCGA	RV	LGG	TCGA-TM-A7CF-02A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370882	ENST00000598564		TCGA	RV	LGG	TCGA-TM-A7CF-02A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
Frame-shit	ENST00000370882	ENST00000417295		TCGA	RV	LGG	TCGA-TM-A7CF-02A	LRRC1	chr6	53707025	+	SH3GL1	chr19	4366991	-
In-frame	ENST00000367157	ENST00000367249		TCGA	RV	LGG	TCGA-HT-8011-01A	NUAK2	chr1	205290526	-	CYB5R1	chr1	202936026	-
5CDS-intron	ENST00000367157	ENST00000497655		TCGA	RV	LGG	TCGA-HT-8011-01A	NUAK2	chr1	205290526	-	CYB5R1	chr1	202936026	-
In-frame	ENST00000377532	ENST00000359621		TCGA	RV	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2A	chr1	15792494	+
5CDS-intron	ENST00000377532	ENST00000497590		TCGA	RV	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2A	chr1	15792494	+
In-frame	ENST00000361923	ENST00000359621		TCGA	RV	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2A	chr1	15792494	+
5CDS-intron	ENST00000361923	ENST00000497590		TCGA	RV	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2A	chr1	15792494	+
In-frame	ENST00000377541	ENST00000359621		TCGA	RV	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2A	chr1	15792494	+
5CDS-intron	ENST00000377541	ENST00000497590		TCGA	RV	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2A	chr1	15792494	+
Frame-shit	ENST00000415757	ENST00000287598		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
Frame-shit	ENST00000415757	ENST00000412359		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
5CDS-intron	ENST00000415757	ENST00000560120		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
Frame-shit	ENST00000389232	ENST00000287598		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
Frame-shit	ENST00000389232	ENST00000412359		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
5CDS-intron	ENST00000389232	ENST00000560120		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
intron-3CDS	ENST00000559917	ENST00000287598		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
intron-3CDS	ENST00000559917	ENST00000412359		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
intron-intron	ENST00000559917	ENST00000560120		TCGA	RV	LGG	TCGA-E1-A7YL-01A	RYR3	chr15	33765739	+	BUB1B	chr15	40457254	+
In-frame	ENST00000381431	ENST00000373610		TCGA	RV	LGG	TCGA-FG-5965-02A	SGCB	chr4	52904393	-	TXLNA	chr1	32655656	+
In-frame	ENST00000381431	ENST00000373609		TCGA	RV	LGG	TCGA-FG-5965-02A	SGCB	chr4	52904393	-	TXLNA	chr1	32655656	+
In-frame	ENST00000535450	ENST00000373610		TCGA	RV	LGG	TCGA-FG-5965-02A	SGCB	chr4	52904393	-	TXLNA	chr1	32655656	+
In-frame	ENST00000535450	ENST00000373609		TCGA	RV	LGG	TCGA-FG-5965-02A	SGCB	chr4	52904393	-	TXLNA	chr1	32655656	+
In-frame	ENST00000304987	ENST00000409699		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
In-frame	ENST00000304987	ENST00000360698		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
In-frame	ENST00000304987	ENST00000422354		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
In-frame	ENST00000304987	ENST00000395625		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
In-frame	ENST00000304987	ENST00000288745		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
5CDS-intron	ENST00000304987	ENST00000478721		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
5CDS-5UTR	ENST00000304987	ENST00000395614		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-3CDS	ENST00000533868	ENST00000409699		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-3CDS	ENST00000533868	ENST00000360698		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-3CDS	ENST00000533868	ENST00000422354		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-3CDS	ENST00000533868	ENST00000395625		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-3CDS	ENST00000533868	ENST00000288745		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-intron	ENST00000533868	ENST00000478721		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
intron-5UTR	ENST00000533868	ENST00000395614		TCGA	RV	LGG	TCGA-DU-7298-01A	SIK2	chr11	111558886	+	MEGF11	chr15	66274826	-
3UTR-3CDS	ENST00000514641	ENST00000371817		TCGA	RV	LGG	TCGA-WY-A859-01A	SMAD5	chr5	135468651	+	COL5A1	chr9	137591755	+
3UTR-3UTR	ENST00000514641	ENST00000464187		TCGA	RV	LGG	TCGA-WY-A859-01A	SMAD5	chr5	135468651	+	COL5A1	chr9	137591755	+
5UTR-3CDS	ENST00000545620	ENST00000371817		TCGA	RV	LGG	TCGA-WY-A859-01A	SMAD5	chr5	135468651	+	COL5A1	chr9	137591755	+
5UTR-3UTR	ENST00000545620	ENST00000464187		TCGA	RV	LGG	TCGA-WY-A859-01A	SMAD5	chr5	135468651	+	COL5A1	chr9	137591755	+
5UTR-3CDS	ENST00000545279	ENST00000371817		TCGA	RV	LGG	TCGA-WY-A859-01A	SMAD5	chr5	135468651	+	COL5A1	chr9	137591755	+
5UTR-3UTR	ENST00000545279	ENST00000464187		TCGA	RV	LGG	TCGA-WY-A859-01A	SMAD5	chr5	135468651	+	COL5A1	chr9	137591755	+
Frame-shit	ENST00000316399	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000316399	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000316399	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000396356	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000396356	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000396356	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000352083	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000352083	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000352083	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528252	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528252	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000528252	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000527619	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000527619	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000527619	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528429	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528429	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000528429	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3CDS	ENST00000533658	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3CDS	ENST00000533658	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3UTR	ENST00000533658	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-02A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3CDS	ENST00000396671	ENST00000493615		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3CDS	ENST00000396671	ENST00000485303		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3CDS	ENST00000396671	ENST00000319792		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3UTR	ENST00000396671	ENST00000488016		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3CDS	ENST00000356447	ENST00000493615		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3CDS	ENST00000356447	ENST00000485303		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3CDS	ENST00000356447	ENST00000319792		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3UTR	ENST00000356447	ENST00000488016		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3CDS	ENST00000416420	ENST00000493615		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3CDS	ENST00000416420	ENST00000485303		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3CDS	ENST00000416420	ENST00000319792		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
5UTR-3UTR	ENST00000416420	ENST00000488016		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3CDS	ENST00000280696	ENST00000493615		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3CDS	ENST00000280696	ENST00000485303		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3CDS	ENST00000280696	ENST00000319792		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
intron-3UTR	ENST00000280696	ENST00000488016		TCGA	RV	LGG	TCGA-HT-7477-01B	THRB	chr3	24338717	-	PVRL3	chr3	110830877	+
Frame-shit	ENST00000340353	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-02A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
intron-3CDS	ENST00000532959	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-02A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000305494	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-02A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
5UTR-3CDS	ENST00000535167	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-02A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000355734	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-02A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
5UTR-3CDS	ENST00000367674	ENST00000367669		TCGA	RV	LGG	TCGA-TQ-A7RU-01A	TNR	chr1	175497405	-	RFWD2	chr1	175958615	-
5UTR-3CDS	ENST00000367674	ENST00000308769		TCGA	RV	LGG	TCGA-TQ-A7RU-01A	TNR	chr1	175497405	-	RFWD2	chr1	175958615	-
5UTR-3CDS	ENST00000263525	ENST00000367669		TCGA	RV	LGG	TCGA-TQ-A7RU-01A	TNR	chr1	175497405	-	RFWD2	chr1	175958615	-
5UTR-3CDS	ENST00000263525	ENST00000308769		TCGA	RV	LGG	TCGA-TQ-A7RU-01A	TNR	chr1	175497405	-	RFWD2	chr1	175958615	-
In-frame	ENST00000263801	ENST00000261891		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000263801	ENST00000457488		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000263801	ENST00000558069		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
5CDS-5UTR	ENST00000263801	ENST00000558482		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000382039	ENST00000261891		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000382039	ENST00000457488		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000382039	ENST00000558069		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
5CDS-5UTR	ENST00000382039	ENST00000558482		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000382044	ENST00000261891		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000382044	ENST00000457488		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000382044	ENST00000558069		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
5CDS-5UTR	ENST00000382044	ENST00000558482		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000450115	ENST00000261891		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000450115	ENST00000457488		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
In-frame	ENST00000450115	ENST00000558069		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
5CDS-5UTR	ENST00000450115	ENST00000558482		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
intron-3CDS	ENST00000605155	ENST00000261891		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
intron-3CDS	ENST00000605155	ENST00000457488		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
intron-3CDS	ENST00000605155	ENST00000558069		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
intron-5UTR	ENST00000605155	ENST00000558482		TCGA	RV	LGG	TCGA-DU-A7TC-01A	TP53BP1	chr15	43771595	-	DAPK2	chr15	64263760	-
5CDS-intron	ENST00000240587	ENST00000599715		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000240587	ENST00000006724		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000240587	ENST00000338196		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000240587	ENST00000401731		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000240587	ENST00000602225		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000558569	ENST00000599715		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000558569	ENST00000006724		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000558569	ENST00000338196		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000558569	ENST00000401731		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
5CDS-intron	ENST00000558569	ENST00000602225		TCGA	RV	LGG	TCGA-P5-A5EU-01A	TSHZ3	chr19	31840086	-	CEACAM7	chr19	42181431	-
Frame-shit	ENST00000355666	ENST00000333229		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000355666	ENST00000342449		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000355666	ENST00000380800		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000355666	ENST00000341322		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000355666	ENST00000470108		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000399017	ENST00000333229		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000399017	ENST00000342449		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000399017	ENST00000380800		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000399017	ENST00000341322		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000399017	ENST00000470108		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000354749	ENST00000333229		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000354749	ENST00000342449		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000354749	ENST00000380800		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000354749	ENST00000341322		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000354749	ENST00000470108		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
3UTR-3CDS	ENST00000479930	ENST00000333229		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
3UTR-3CDS	ENST00000479930	ENST00000342449		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
3UTR-3CDS	ENST00000479930	ENST00000380800		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
3UTR-intron	ENST00000479930	ENST00000341322		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
3UTR-intron	ENST00000479930	ENST00000470108		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000540756	ENST00000333229		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000540756	ENST00000342449		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
Frame-shit	ENST00000540756	ENST00000380800		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000540756	ENST00000341322		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-intron	ENST00000540756	ENST00000470108		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
intron-3CDS	ENST00000399010	ENST00000333229		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
intron-3CDS	ENST00000399010	ENST00000342449		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
intron-3CDS	ENST00000399010	ENST00000380800		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
intron-intron	ENST00000399010	ENST00000341322		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
intron-intron	ENST00000399010	ENST00000470108		TCGA	RV	LGG	TCGA-DU-6406-01A	TTC3	chr21	38498443	+	BRWD1	chr21	40636611	-
5CDS-3UTR	ENST00000317829	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-3UTR	ENST00000317829	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000317829	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000317829	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000317837	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000317837	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000317837	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000317837	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-3UTR	ENST00000433060	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-3UTR	ENST00000433060	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000433060	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5CDS-5UTR	ENST00000433060	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000539727	ENST00000463837		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-3UTR	ENST00000539727	ENST00000356786		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000539727	ENST00000301897		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
intron-5UTR	ENST00000539727	ENST00000359902		TCGA	RV	LGG	TCGA-FG-5963-02A	AMOTL1	chr11	94587247	+	CCDC88B	chr11	64118948	+
5UTR-3CDS	ENST00000481646	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000481646	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000469044	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000469044	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000491704	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000491704	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000358441	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000358441	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000489213	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000489213	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000461822	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000461822	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000485396	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000485396	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000471453	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
5UTR-3CDS	ENST00000471453	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000470821	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000470821	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000393058	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000393058	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000538260	ENST00000343735		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
Frame-shit	ENST00000538260	ENST00000183605		TCGA	RV	LGG	TCGA-E1-5303-01A	ARMC8	chr3	137906441	+	CLDN18	chr3	137742500	+
In-frame	ENST00000276390	ENST00000281156		TCGA	RV	LGG	TCGA-DU-A7TC-01A	ATP6V1B2	chr8	20070416	+	KHDRBS2	chr6	62611276	-
intron-3CDS	ENST00000524958	ENST00000405837		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000524958	ENST00000433053		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000524958	ENST00000278893		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000524958	ENST00000360796		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000524958	ENST00000403550		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000524958	ENST00000407022		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000524958	ENST00000421906		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-5UTR	ENST00000524958	ENST00000537604		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000405837		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000433053		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000278893		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000360796		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000403550		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000407022		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000354588	ENST00000421906		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000354588	ENST00000537604		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000405837		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000433053		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000278893		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000360796		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000403550		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000407022		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000431002	ENST00000421906		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000431002	ENST00000537604		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000405837		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000433053		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000278893		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000360796		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000403550		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000407022		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000532208	ENST00000421906		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000532208	ENST00000537604		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000405837		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000433053		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000278893		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000360796		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000403550		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000407022		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000525675	ENST00000421906		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
intron-5UTR	ENST00000525675	ENST00000537604		TCGA	RV	LGG	TCGA-S9-A7R8-01A	C11orf48	chr11	62437113	-	BSCL2	chr11	62462183	-
In-frame	ENST00000314355	ENST00000545128		TCGA	RV	LGG	TCGA-E1-5304-01A	CKS2	chr9	91930212	+	PCSK5	chr9	78789902	+
In-frame	ENST00000314355	ENST00000376767		TCGA	RV	LGG	TCGA-E1-5304-01A	CKS2	chr9	91930212	+	PCSK5	chr9	78789902	+
In-frame	ENST00000314355	ENST00000376752		TCGA	RV	LGG	TCGA-E1-5304-01A	CKS2	chr9	91930212	+	PCSK5	chr9	78789902	+
5CDS-intron	ENST00000400256	ENST00000580436		TCGA	RV	LGG	TCGA-HT-8106-01A	COLEC12	chr18	357400	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000400606		TCGA	RV	LGG	TCGA-HT-8106-01A	COLEC12	chr18	357400	-	CLUL1	chr18	606978	+
5CDS-5UTR	ENST00000400256	ENST00000540035		TCGA	RV	LGG	TCGA-HT-8106-01A	COLEC12	chr18	357400	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000581619		TCGA	RV	LGG	TCGA-HT-8106-01A	COLEC12	chr18	357400	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000338387		TCGA	RV	LGG	TCGA-HT-8106-01A	COLEC12	chr18	357400	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000579494		TCGA	RV	LGG	TCGA-HT-8106-01A	COLEC12	chr18	357400	-	CLUL1	chr18	606978	+
intron-5UTR	ENST00000394026	ENST00000246841		TCGA	RV	LGG	TCGA-HT-A619-01A	COQ6	chr14	74417198	+	FLRT1	chr11	63883691	+
intron-5UTR	ENST00000238709	ENST00000246841		TCGA	RV	LGG	TCGA-HT-A619-01A	COQ6	chr14	74417198	+	FLRT1	chr11	63883691	+
5CDS-5UTR	ENST00000334571	ENST00000246841		TCGA	RV	LGG	TCGA-HT-A619-01A	COQ6	chr14	74417198	+	FLRT1	chr11	63883691	+
5CDS-5UTR	ENST00000554920	ENST00000246841		TCGA	RV	LGG	TCGA-HT-A619-01A	COQ6	chr14	74417198	+	FLRT1	chr11	63883691	+
3UTR-5UTR	ENST00000555552	ENST00000246841		TCGA	RV	LGG	TCGA-HT-A619-01A	COQ6	chr14	74417198	+	FLRT1	chr11	63883691	+
5CDS-5UTR	ENST00000251166	ENST00000326181		TCGA	RV	LGG	TCGA-TM-A84I-01A	CORO7	chr16	4437987	-	TRAF7	chr16	2213884	+
5CDS-5UTR	ENST00000539968	ENST00000326181		TCGA	RV	LGG	TCGA-TM-A84I-01A	CORO7	chr16	4437987	-	TRAF7	chr16	2213884	+
5CDS-5UTR	ENST00000537233	ENST00000326181		TCGA	RV	LGG	TCGA-TM-A84I-01A	CORO7	chr16	4437987	-	TRAF7	chr16	2213884	+
5CDS-5UTR	ENST00000574025	ENST00000326181		TCGA	RV	LGG	TCGA-TM-A84I-01A	CORO7	chr16	4437987	-	TRAF7	chr16	2213884	+
5CDS-5UTR	ENST00000423908	ENST00000326181		TCGA	RV	LGG	TCGA-TM-A84I-01A	CORO7	chr16	4437987	-	TRAF7	chr16	2213884	+
intron-5UTR	ENST00000577144	ENST00000326181		TCGA	RV	LGG	TCGA-TM-A84I-01A	CORO7	chr16	4437987	-	TRAF7	chr16	2213884	+
5CDS-5UTR	ENST00000262367	ENST00000301740		TCGA	RV	LGG	TCGA-TM-A84I-01A	CREBBP	chr16	3929833	-	SRRM2	chr16	2806335	+
5CDS-intron	ENST00000262367	ENST00000574593		TCGA	RV	LGG	TCGA-TM-A84I-01A	CREBBP	chr16	3929833	-	SRRM2	chr16	2806335	+
5CDS-5UTR	ENST00000382070	ENST00000301740		TCGA	RV	LGG	TCGA-TM-A84I-01A	CREBBP	chr16	3929833	-	SRRM2	chr16	2806335	+
5CDS-intron	ENST00000382070	ENST00000574593		TCGA	RV	LGG	TCGA-TM-A84I-01A	CREBBP	chr16	3929833	-	SRRM2	chr16	2806335	+
Frame-shit	ENST00000441788	ENST00000221543		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000441788	ENST00000535102		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-intron	ENST00000441788	ENST00000598789		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000313639	ENST00000221543		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000313639	ENST00000535102		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-intron	ENST00000313639	ENST00000598789		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000395095	ENST00000221543		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000395095	ENST00000535102		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-intron	ENST00000395095	ENST00000598789		TCGA	RV	LGG	TCGA-TM-A7CF-01A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-5UTR	ENST00000381971	ENST00000397885		TCGA	RV	LGG	TCGA-HT-7882-01A	GLIS3	chr9	4286038	-	KIAA0020	chr9	2838517	-
5CDS-intron	ENST00000381971	ENST00000469168		TCGA	RV	LGG	TCGA-HT-7882-01A	GLIS3	chr9	4286038	-	KIAA0020	chr9	2838517	-
intron-5UTR	ENST00000324333	ENST00000397885		TCGA	RV	LGG	TCGA-HT-7882-01A	GLIS3	chr9	4286038	-	KIAA0020	chr9	2838517	-
intron-intron	ENST00000324333	ENST00000469168		TCGA	RV	LGG	TCGA-HT-7882-01A	GLIS3	chr9	4286038	-	KIAA0020	chr9	2838517	-
intron-5UTR	ENST00000461870	ENST00000397885		TCGA	RV	LGG	TCGA-HT-7882-01A	GLIS3	chr9	4286038	-	KIAA0020	chr9	2838517	-
intron-intron	ENST00000461870	ENST00000469168		TCGA	RV	LGG	TCGA-HT-7882-01A	GLIS3	chr9	4286038	-	KIAA0020	chr9	2838517	-
Frame-shit	ENST00000439174	ENST00000394464		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000343796		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000415690		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000424646		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000504572		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000394466		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000231509		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000416954		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000439174	ENST00000503201		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
5CDS-intron	ENST00000439174	ENST00000504336		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000394464		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000343796		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000415690		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000424646		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000504572		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000394466		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000231509		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000416954		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000541118	ENST00000503201		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
5CDS-intron	ENST00000541118	ENST00000504336		TCGA	RV	LGG	TCGA-DU-7006-01A	GNA13	chr17	63049620	-	NR3C1	chr5	142662290	-
Frame-shit	ENST00000340170	ENST00000335953		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000340170	ENST00000392996		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
5CDS-intron	ENST00000340170	ENST00000535379		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000263208	ENST00000335953		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000263208	ENST00000392996		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
5CDS-intron	ENST00000263208	ENST00000535379		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000541063	ENST00000335953		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000541063	ENST00000392996		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
5CDS-intron	ENST00000541063	ENST00000535379		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
In-frame	ENST00000546308	ENST00000335953		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
In-frame	ENST00000546308	ENST00000392996		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
5CDS-intron	ENST00000546308	ENST00000535379		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000464189	ENST00000335953		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000464189	ENST00000392996		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-intron	ENST00000464189	ENST00000535379		TCGA	RV	LGG	TCGA-HT-7686-01A	HIRA	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000339307	ENST00000425792		TCGA	RV	LGG	TCGA-HT-7477-01B	ITGA4	chr2	182323044	+	UBE2E2	chr3	23541099	+
Frame-shit	ENST00000339307	ENST00000396703		TCGA	RV	LGG	TCGA-HT-7477-01B	ITGA4	chr2	182323044	+	UBE2E2	chr3	23541099	+
Frame-shit	ENST00000397033	ENST00000425792		TCGA	RV	LGG	TCGA-HT-7477-01B	ITGA4	chr2	182323044	+	UBE2E2	chr3	23541099	+
Frame-shit	ENST00000397033	ENST00000396703		TCGA	RV	LGG	TCGA-HT-7477-01B	ITGA4	chr2	182323044	+	UBE2E2	chr3	23541099	+
3UTR-3CDS	ENST00000478440	ENST00000425792		TCGA	RV	LGG	TCGA-HT-7477-01B	ITGA4	chr2	182323044	+	UBE2E2	chr3	23541099	+
3UTR-3CDS	ENST00000478440	ENST00000396703		TCGA	RV	LGG	TCGA-HT-7477-01B	ITGA4	chr2	182323044	+	UBE2E2	chr3	23541099	+
In-frame	ENST00000297591	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000297591	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000297591	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000297591	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000297591	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000297591	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000437199	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000437199	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000437199	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000437199	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000437199	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
In-frame	ENST00000421249	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000421249	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000421249	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000421249	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000421249	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000533895		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000424158		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000532779		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000399066		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000523405	ENST00000446070		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000528331		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000276646		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000528647		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000440310		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000433638		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000408908		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000408889		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000422135		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000419099		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000533065		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000523405	ENST00000533171		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-intron	ENST00000523405	ENST00000529175		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-intron	ENST00000523405	ENST00000529690		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-intron	ENST00000523405	ENST00000527707		TCGA	RV	LGG	TCGA-TQ-A7RV-02A	KIAA1429	chr8	95547067	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000443149	ENST00000334983		TCGA	RV	LGG	TCGA-DU-7014-01A	KIAA2026	chr9	6007195	-	CMTM7	chr3	32483332	+
intron-3CDS	ENST00000443149	ENST00000349718		TCGA	RV	LGG	TCGA-DU-7014-01A	KIAA2026	chr9	6007195	-	CMTM7	chr3	32483332	+
In-frame	ENST00000399933	ENST00000334983		TCGA	RV	LGG	TCGA-DU-7014-01A	KIAA2026	chr9	6007195	-	CMTM7	chr3	32483332	+
In-frame	ENST00000399933	ENST00000349718		TCGA	RV	LGG	TCGA-DU-7014-01A	KIAA2026	chr9	6007195	-	CMTM7	chr3	32483332	+
In-frame	ENST00000381461	ENST00000334983		TCGA	RV	LGG	TCGA-DU-7014-01A	KIAA2026	chr9	6007195	-	CMTM7	chr3	32483332	+
In-frame	ENST00000381461	ENST00000349718		TCGA	RV	LGG	TCGA-DU-7014-01A	KIAA2026	chr9	6007195	-	CMTM7	chr3	32483332	+
intron-3CDS	ENST00000464356	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000464356	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000464356	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000464356	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000464356	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000464356	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-3CDS	ENST00000348159	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000348159	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000348159	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000348159	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000348159	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000348159	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-3CDS	ENST00000353795	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000353795	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000353795	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000353795	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000353795	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000353795	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-3CDS	ENST00000340875	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000340875	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000340875	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000340875	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000340875	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000340875	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-3CDS	ENST00000368240	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000368240	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000368240	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000368240	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000368240	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000368240	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-3CDS	ENST00000360595	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000360595	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000360595	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000360595	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000360595	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
intron-intron	ENST00000360595	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	MEF2D	chr1	156470278	-	SORL1	chr11	121424646	+
5UTR-3CDS	ENST00000311028	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000311028	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000395923	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000395923	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000220931	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000220931	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000521599	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000521599	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000522951	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000522951	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000519508	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000519508	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000521371	ENST00000445593		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000521371	ENST00000521545		TCGA	RV	LGG	TCGA-HT-8106-01A	NCALD	chr8	102928037	-	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000325642	ENST00000324464		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
intron-3CDS	ENST00000325642	ENST00000450541		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
intron-3CDS	ENST00000325642	ENST00000243583		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
intron-3CDS	ENST00000529574	ENST00000324464		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
intron-3CDS	ENST00000529574	ENST00000450541		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
intron-3CDS	ENST00000529574	ENST00000243583		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000395076	ENST00000324464		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000395076	ENST00000450541		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000395076	ENST00000243583		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000325658	ENST00000324464		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000325658	ENST00000450541		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000325658	ENST00000243583		TCGA	RV	LGG	TCGA-P5-A5F2-01A	PPM1A	chr14	60716395	+	ADCK4	chr19	41220302	-
5UTR-3CDS	ENST00000247833	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
5UTR-3CDS	ENST00000378815	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
5UTR-3CDS	ENST00000325555	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
5UTR-3CDS	ENST00000483530	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
intron-3CDS	ENST00000550536	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
intron-3CDS	ENST00000362025	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
intron-3CDS	ENST00000551641	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
intron-3CDS	ENST00000553099	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
intron-3CDS	ENST00000550847	ENST00000261195		TCGA	RV	LGG	TCGA-TQ-A7RH-01A	RAB3IP	chr12	70132811	+	GYS2	chr12	21733457	-
intron-5UTR	ENST00000265678	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000265678	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
5CDS-5UTR	ENST00000510118	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
5CDS-5UTR	ENST00000510118	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
5CDS-5UTR	ENST00000503859	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
5CDS-5UTR	ENST00000503859	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000481261	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000481261	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000405189	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000405189	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000366863	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000366863	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000509742	ENST00000281806		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
intron-5UTR	ENST00000509742	ENST00000369212		TCGA	RV	LGG	TCGA-DU-7006-01A	RPS6KA2	chr6	167271688	-	MCHR2	chr6	100404050	-
Frame-shit	ENST00000554335	ENST00000216420		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
5CDS-3UTR	ENST00000554335	ENST00000557512		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
Frame-shit	ENST00000251091	ENST00000216420		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
5CDS-3UTR	ENST00000251091	ENST00000557512		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
3UTR-3CDS	ENST00000555112	ENST00000216420		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
3UTR-3UTR	ENST00000555112	ENST00000557512		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
Frame-shit	ENST00000392067	ENST00000216420		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
5CDS-3UTR	ENST00000392067	ENST00000557512		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
Frame-shit	ENST00000357634	ENST00000216420		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
5CDS-3UTR	ENST00000357634	ENST00000557512		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
intron-3CDS	ENST00000555192	ENST00000216420		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
intron-3UTR	ENST00000555192	ENST00000557512		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	SAMD4A	chr14	55034830	+	CGRRF1	chr14	55004440	+
In-frame	ENST00000401642	ENST00000507166		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000401642	ENST00000358575		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000401642	ENST00000337488		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000401642	ENST00000507922		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000401642	ENST00000306932		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000401642	ENST00000510668		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000388940	ENST00000507166		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000388940	ENST00000358575		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000388940	ENST00000337488		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000388940	ENST00000507922		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
In-frame	ENST00000388940	ENST00000306932		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000388940	ENST00000510668		TCGA	RV	LGG	TCGA-S9-A6WQ-01A	SCFD2	chr4	54218765	-	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000425792	ENST00000265362		TCGA	RV	LGG	TCGA-FG-5963-02A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
Frame-shit	ENST00000425792	ENST00000436949		TCGA	RV	LGG	TCGA-FG-5963-02A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
5CDS-intron	ENST00000425792	ENST00000471474		TCGA	RV	LGG	TCGA-FG-5963-02A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
Frame-shit	ENST00000396703	ENST00000265362		TCGA	RV	LGG	TCGA-FG-5963-02A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
Frame-shit	ENST00000396703	ENST00000436949		TCGA	RV	LGG	TCGA-FG-5963-02A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
5CDS-intron	ENST00000396703	ENST00000471474		TCGA	RV	LGG	TCGA-FG-5963-02A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
In-frame	ENST00000372067	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000417285	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000324450	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000413642	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000372055	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000482630	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000425836	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000372064	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000372077	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000520948	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000523873	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000523950	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000518689	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000523125	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000457104	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000518824	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
In-frame	ENST00000230480	ENST00000229812		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VEGFA	chr6	43745402	+	STK38	chr6	36467767	-
Frame-shit	ENST00000318006	ENST00000454181		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5CDS-intron	ENST00000318006	ENST00000558126		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5CDS-intron	ENST00000318006	ENST00000267838		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5CDS-intron	ENST00000318006	ENST00000560491		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
Frame-shit	ENST00000348544	ENST00000454181		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5CDS-intron	ENST00000348544	ENST00000558126		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5CDS-intron	ENST00000348544	ENST00000267838		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5CDS-intron	ENST00000348544	ENST00000560491		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5UTR-3CDS	ENST00000568357	ENST00000454181		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5UTR-intron	ENST00000568357	ENST00000558126		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5UTR-intron	ENST00000568357	ENST00000267838		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
5UTR-intron	ENST00000568357	ENST00000560491		TCGA	RV	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017318	-
In-frame	ENST00000290974	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000290974	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000290974	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000290974	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-intron	ENST00000290974	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
In-frame	ENST00000511071	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000511071	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000511071	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000511071	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-intron	ENST00000511071	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-3CDS	ENST00000515312	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000515312	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000515312	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000515312	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-intron	ENST00000515312	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-3CDS	ENST00000515169	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000515169	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000515169	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000515169	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-intron	ENST00000515169	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
In-frame	ENST00000509171	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000509171	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000509171	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000509171	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-intron	ENST00000509171	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
In-frame	ENST00000503000	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000503000	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000503000	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-5UTR	ENST00000503000	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
5CDS-intron	ENST00000503000	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-3CDS	ENST00000508471	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000508471	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000508471	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000508471	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-intron	ENST00000508471	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-3CDS	ENST00000505421	ENST00000504487		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000505421	ENST00000428116		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000505421	ENST00000389609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-5UTR	ENST00000505421	ENST00000502801		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
intron-intron	ENST00000505421	ENST00000508236		TCGA	RV	LGG	TCGA-DH-A669-01A	ZFYVE28	chr4	2420012	-	CCDC149	chr4	24878319	-
In-frame	ENST00000381602	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381602	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000397962	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000309776	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000509513	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000397959	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381591	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000403354	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381607	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000402736	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000602682	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381604	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381584	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000558098	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000545619	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000535374	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-intron	ENST00000473115	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-02A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
Frame-shit	ENST00000369042	ENST00000369066		TCGA	RV	LGG	TCGA-DU-7010-01A	BEND3	chr6	107419755	-	AIM1	chr6	106989461	+
Frame-shit	ENST00000369042	ENST00000535438		TCGA	RV	LGG	TCGA-DU-7010-01A	BEND3	chr6	107419755	-	AIM1	chr6	106989461	+
5CDS-intron	ENST00000369042	ENST00000487681		TCGA	RV	LGG	TCGA-DU-7010-01A	BEND3	chr6	107419755	-	AIM1	chr6	106989461	+
Frame-shit	ENST00000429433	ENST00000369066		TCGA	RV	LGG	TCGA-DU-7010-01A	BEND3	chr6	107419755	-	AIM1	chr6	106989461	+
Frame-shit	ENST00000429433	ENST00000535438		TCGA	RV	LGG	TCGA-DU-7010-01A	BEND3	chr6	107419755	-	AIM1	chr6	106989461	+
5CDS-intron	ENST00000429433	ENST00000487681		TCGA	RV	LGG	TCGA-DU-7010-01A	BEND3	chr6	107419755	-	AIM1	chr6	106989461	+
5CDS-intron	ENST00000346916	ENST00000371917		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000346916	ENST00000493140		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000545507	ENST00000371917		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000545507	ENST00000493140		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000333511	ENST00000371917		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000333511	ENST00000493140		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000353555	ENST00000371917		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000353555	ENST00000493140		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000574970	ENST00000371917		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000574970	ENST00000493140		TCGA	RV	LGG	TCGA-DU-5851-01A	BSG	chr19	583492	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000504487	ENST00000345843		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000342295		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000361572		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000348160		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000355476		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000511401		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000507561		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000504907		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
5CDS-intron	ENST00000504487	ENST00000342320		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000345843		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000342295		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000361572		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000348160		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000355476		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000511401		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000507561		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000504907		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000428116	ENST00000342320		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000345843		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000342295		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000361572		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000348160		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000355476		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000511401		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000507561		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000504907		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000389609	ENST00000342320		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000345843		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000342295		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000361572		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000348160		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000355476		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000511401		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000507561		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000504907		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000502801	ENST00000342320		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000345843		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000342295		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000361572		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000348160		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000355476		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000511401		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000507561		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000504907		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
intron-intron	ENST00000508236	ENST00000342320		TCGA	RV	LGG	TCGA-S9-A7IS-01A	CCDC149	chr4	24807739	-	RBPJ	chr4	26274229	+
In-frame	ENST00000274458	ENST00000316788		TCGA	RV	LGG	TCGA-DB-5273-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000274458	ENST00000505423		TCGA	RV	LGG	TCGA-DB-5273-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000515539	ENST00000316788		TCGA	RV	LGG	TCGA-DB-5273-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
In-frame	ENST00000515539	ENST00000505423		TCGA	RV	LGG	TCGA-DB-5273-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-3CDS	ENST00000503424	ENST00000316788		TCGA	RV	LGG	TCGA-DB-5273-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
intron-3CDS	ENST00000503424	ENST00000505423		TCGA	RV	LGG	TCGA-DB-5273-01A	COMMD10	chr5	115428397	+	AP3S1	chr5	115230784	+
5UTR-intron	ENST00000548804	ENST00000309364		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000359180		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000317589		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000355397		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000429027		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000539256		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000299275		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000538714		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000543806		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000424268		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000540972		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548804	ENST00000510738		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000309364		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000359180		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000317589		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000355397		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000429027		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000539256		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000299275		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000538714		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000543806		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000424268		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000540972		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337737	ENST00000510738		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000309364		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000359180		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000317589		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000355397		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000429027		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000539256		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000299275		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000538714		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000543806		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000424268		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000540972		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000548198	ENST00000510738		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000309364		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000359180		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000317589		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000355397		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000429027		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000539256		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000299275		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000538714		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000543806		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000424268		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000540972		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000551632	ENST00000510738		TCGA	RV	LGG	TCGA-TM-A84I-01A	DTX3	chr12	57998641	+	PLEKHA5	chr12	19473496	+
In-frame	ENST00000398015	ENST00000302334		TCGA	RV	LGG	TCGA-HT-A617-01A	EPHB1	chr3	134873118	+	BFSP2	chr3	133166161	+
5CDS-intron	ENST00000398015	ENST00000511434		TCGA	RV	LGG	TCGA-HT-A617-01A	EPHB1	chr3	134873118	+	BFSP2	chr3	133166161	+
intron-3CDS	ENST00000488154	ENST00000302334		TCGA	RV	LGG	TCGA-HT-A617-01A	EPHB1	chr3	134873118	+	BFSP2	chr3	133166161	+
intron-intron	ENST00000488154	ENST00000511434		TCGA	RV	LGG	TCGA-HT-A617-01A	EPHB1	chr3	134873118	+	BFSP2	chr3	133166161	+
In-frame	ENST00000493838	ENST00000302334		TCGA	RV	LGG	TCGA-HT-A617-01A	EPHB1	chr3	134873118	+	BFSP2	chr3	133166161	+
5CDS-intron	ENST00000493838	ENST00000511434		TCGA	RV	LGG	TCGA-HT-A617-01A	EPHB1	chr3	134873118	+	BFSP2	chr3	133166161	+
Frame-shit	ENST00000255977	ENST00000275884		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000255977	ENST00000537639		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000255977	ENST00000496613		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
5CDS-intron	ENST00000255977	ENST00000492720		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000437223	ENST00000275884		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000437223	ENST00000537639		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000437223	ENST00000496613		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
5CDS-intron	ENST00000437223	ENST00000492720		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000474576	ENST00000275884		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000474576	ENST00000537639		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000474576	ENST00000496613		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
5CDS-intron	ENST00000474576	ENST00000492720		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000480552	ENST00000275884		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000480552	ENST00000537639		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000480552	ENST00000496613		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-intron	ENST00000480552	ENST00000492720		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000443720	ENST00000275884		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000443720	ENST00000537639		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000443720	ENST00000496613		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-intron	ENST00000443720	ENST00000492720		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000481705	ENST00000275884		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000481705	ENST00000537639		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-3CDS	ENST00000481705	ENST00000496613		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
intron-intron	ENST00000481705	ENST00000492720		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MKRN1	chr7	140156452	-	DENND2A	chr7	140219518	-
5CDS-5UTR	ENST00000446906	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000446906	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000446906	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377072	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000377072	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000307729	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000307729	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-5UTR	ENST00000377059	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
5CDS-3UTR	ENST00000377059	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000495130	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-3UTR	ENST00000495130	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377100	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-3UTR	ENST00000377100	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000375664		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000375646		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000347934		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000354911		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-5UTR	ENST00000377091	ENST00000428935		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
intron-3UTR	ENST00000377091	ENST00000532233		TCGA	RV	LGG	TCGA-TQ-A7RV-01A	MLLT10	chr10	21906136	+	WAC	chr10	28824491	+
Frame-shit	ENST00000409261	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409261	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409261	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409213	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409213	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409213	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000405974	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000405974	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000405974	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000317721	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000317721	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000317721	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000473859	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000473859	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000473859	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-01A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000367469	ENST00000344191		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000367469	ENST00000351017		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000367469	ENST00000392108		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000367469	ENST00000392112		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000367469	ENST00000366806		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000367469	ENST00000447894		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000367469	ENST00000400822		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3UTR	ENST00000367469	ENST00000507679		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000344191		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000351017		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000392108		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000392112		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000366806		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000447894		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
In-frame	ENST00000367467	ENST00000400822		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
5CDS-3UTR	ENST00000367467	ENST00000507679		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000344191		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000351017		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000392108		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000392112		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000366806		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000447894		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3CDS	ENST00000470750	ENST00000400822		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
intron-3UTR	ENST00000470750	ENST00000507679		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SASH1	chr6	148841029	+	MLLT4	chr6	168343809	+
5CDS-intron	ENST00000265113	ENST00000408982		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265113	ENST00000262477		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265113	ENST00000537505		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265113	ENST00000546142		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265113	ENST00000341923		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000265113	ENST00000570487		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000506725	ENST00000408982		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000506725	ENST00000262477		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000506725	ENST00000537505		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000506725	ENST00000546142		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000506725	ENST00000341923		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000506725	ENST00000570487		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000381918	ENST00000408982		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000381918	ENST00000262477		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000381918	ENST00000537505		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000381918	ENST00000546142		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000381918	ENST00000341923		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000381918	ENST00000570487		TCGA	RV	LGG	TCGA-DU-6397-01A	SLC1A3	chr5	36688434	+	RABEP1	chr17	5283828	+
In-frame	ENST00000262013	ENST00000376355		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000262013	ENST00000444838		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000262013	ENST00000376360		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000262013	ENST00000376354		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000262013	ENST00000339105		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
In-frame	ENST00000505279	ENST00000376355		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000505279	ENST00000444838		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000505279	ENST00000376360		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000505279	ENST00000376354		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000505279	ENST00000339105		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
In-frame	ENST00000357122	ENST00000376355		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000357122	ENST00000444838		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000357122	ENST00000376360		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000357122	ENST00000376354		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-intron	ENST00000357122	ENST00000339105		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-3CDS	ENST00000509724	ENST00000376355		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000509724	ENST00000444838		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000509724	ENST00000376360		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000509724	ENST00000376354		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000509724	ENST00000339105		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-3CDS	ENST00000510283	ENST00000376355		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000510283	ENST00000444838		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000510283	ENST00000376360		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000510283	ENST00000376354		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
intron-intron	ENST00000510283	ENST00000339105		TCGA	RV	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100543572	+
5CDS-5UTR	ENST00000368642	ENST00000547702		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
5CDS-5UTR	ENST00000368642	ENST00000551295		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
5CDS-5UTR	ENST00000368642	ENST00000547849		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
5CDS-5UTR	ENST00000368642	ENST00000347616		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
5CDS-5UTR	ENST00000368642	ENST00000348761		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
5CDS-intron	ENST00000368642	ENST00000550305		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
5CDS-intron	ENST00000368642	ENST00000360099		TCGA	RV	LGG	TCGA-S9-A7R3-01A	TCERG1L	chr10	133106474	-	CNTN1	chr12	41302159	+
Frame-shit	ENST00000340353	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-01A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
intron-3CDS	ENST00000532959	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-01A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000305494	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-01A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
5UTR-3CDS	ENST00000535167	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-01A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000355734	ENST00000282541		TCGA	RV	LGG	TCGA-FG-5963-01A	TMEM135	chr11	86749228	+	GPD1L	chr3	32169568	+
In-frame	ENST00000539605	ENST00000405201		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000539605	ENST00000404621		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000539605	ENST00000404121		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000539605	ENST00000356219		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000539605	ENST00000397355		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000539605	ENST00000429285		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000357997	ENST00000405201		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000357997	ENST00000404621		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000357997	ENST00000404121		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000357997	ENST00000356219		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000357997	ENST00000397355		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000357997	ENST00000429285		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542282	ENST00000405201		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542282	ENST00000404621		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542282	ENST00000404121		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542282	ENST00000356219		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542282	ENST00000397355		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542282	ENST00000429285		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542657	ENST00000405201		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542657	ENST00000404621		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542657	ENST00000404121		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542657	ENST00000356219		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542657	ENST00000397355		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542657	ENST00000429285		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542374	ENST00000405201		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542374	ENST00000404621		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542374	ENST00000404121		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542374	ENST00000356219		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542374	ENST00000397355		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
intron-3CDS	ENST00000542374	ENST00000429285		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000337516	ENST00000405201		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000337516	ENST00000404621		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000337516	ENST00000404121		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000337516	ENST00000356219		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000337516	ENST00000397355		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
In-frame	ENST00000337516	ENST00000429285		TCGA	RV	LGG	TCGA-DU-8167-01A	ANKLE2	chr12	133327229	-	NCOR2	chr12	124812179	-
Frame-shit	ENST00000343245	ENST00000587331		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
Frame-shit	ENST00000343245	ENST00000405314		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
In-frame	ENST00000369070	ENST00000587331		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
In-frame	ENST00000369070	ENST00000405314		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
Frame-shit	ENST00000369076	ENST00000587331		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
Frame-shit	ENST00000369076	ENST00000405314		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
Frame-shit	ENST00000360666	ENST00000587331		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
Frame-shit	ENST00000360666	ENST00000405314		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
intron-3CDS	ENST00000475645	ENST00000587331		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
intron-3CDS	ENST00000475645	ENST00000405314		TCGA	RV	LGG	TCGA-DU-7010-01A	ATG5	chr6	106763976	-	CEACAM16	chr19	45206619	+
In-frame	ENST00000394524	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394524	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394524	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394524	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394524	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394524	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394524	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000454265	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000454265	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000454265	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000454265	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000454265	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000454265	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000454265	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394526	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394526	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394526	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394526	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394526	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394526	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394526	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000429180	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000429180	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000429180	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000429180	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000429180	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000429180	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000429180	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000296402	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000296402	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000296402	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000296402	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000296402	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000296402	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000296402	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000418639	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000418639	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000418639	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000418639	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000418639	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000418639	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000418639	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000511664	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000511664	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000511664	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000511664	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000511664	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000511664	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000511664	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000342666	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000342666	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000342666	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000342666	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000342666	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000342666	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000342666	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000515496	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000515496	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000515496	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000515496	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000515496	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000515496	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000515496	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000514328	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000514328	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000514328	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000514328	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000514328	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000514328	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000514328	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394522	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394522	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394522	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000394522	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394522	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394522	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000394522	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000505990	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000505990	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000505990	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000505990	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000505990	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000505990	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000505990	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000379773	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000379773	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000379773	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000379773	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000379773	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000379773	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000379773	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000508738	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000508738	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000508738	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
In-frame	ENST00000508738	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000508738	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000508738	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
5CDS-intron	ENST00000508738	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-3CDS	ENST00000509907	ENST00000506722		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-3CDS	ENST00000509907	ENST00000394537		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-3CDS	ENST00000509907	ENST00000357077		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-3CDS	ENST00000509907	ENST00000264366		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-intron	ENST00000509907	ENST00000509550		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-intron	ENST00000509907	ENST00000510275		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
intron-intron	ENST00000509907	ENST00000504887		TCGA	RV	LGG	TCGA-DU-5855-01A	CAMK2D	chr4	114436225	-	ANK2	chr4	114179206	+
Frame-shit	ENST00000585509	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
5CDS-intron	ENST00000585509	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
In-frame	ENST00000589297	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
5CDS-intron	ENST00000589297	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
In-frame	ENST00000591455	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
5CDS-intron	ENST00000591455	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
In-frame	ENST00000446868	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
5CDS-intron	ENST00000446868	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
Frame-shit	ENST00000361101	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
5CDS-intron	ENST00000361101	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
intron-3CDS	ENST00000589296	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
intron-intron	ENST00000589296	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
intron-3CDS	ENST00000586175	ENST00000255681		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
intron-intron	ENST00000586175	ENST00000538595		TCGA	RV	LGG	TCGA-HT-A619-01A	CYTH1	chr17	76694351	-	MACROD1	chr11	63782753	-
5UTR-3CDS	ENST00000473039	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5UTR-3CDS	ENST00000473039	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5UTR-3CDS	ENST00000473039	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5UTR-3CDS	ENST00000473039	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5UTR-3CDS	ENST00000473039	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5UTR-3CDS	ENST00000473039	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5UTR-intron	ENST00000473039	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373624	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373624	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373624	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373624	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373624	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373624	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5CDS-intron	ENST00000373624	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-3CDS	ENST00000542603	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-3CDS	ENST00000542603	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-3CDS	ENST00000542603	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-3CDS	ENST00000542603	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-3CDS	ENST00000542603	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-3CDS	ENST00000542603	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
intron-intron	ENST00000542603	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394219	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394219	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394219	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394219	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394219	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394219	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5CDS-intron	ENST00000394219	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373620	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373620	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373620	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373620	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373620	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373620	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5CDS-intron	ENST00000373620	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000394215	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394215	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000394215	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394215	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000394215	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000394215	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5CDS-intron	ENST00000394215	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000373618	ENST00000373996		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373618	ENST00000313400		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000373618	ENST00000361209		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373618	ENST00000361477		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000373618	ENST00000288520		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
Frame-shit	ENST00000373618	ENST00000341734		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
5CDS-intron	ENST00000373618	ENST00000358637		TCGA	RV	LGG	TCGA-DH-A66B-01A	DENND1A	chr9	126319849	-	ASTN2	chr9	119188367	-
In-frame	ENST00000394702	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000394702	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000394702	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000331242	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000331242	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000331242	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000413276	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000413276	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000413276	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000411766	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000411766	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000411766	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000432937	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000432937	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000432937	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000394703	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000394703	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000394703	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
intron-3CDS	ENST00000580710	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
intron-3CDS	ENST00000580710	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
intron-intron	ENST00000580710	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5UTR-3CDS	ENST00000414194	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5UTR-3CDS	ENST00000414194	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5UTR-intron	ENST00000414194	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-02A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000455140	ENST00000370706		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000455140	ENST00000357489		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000455140	ENST00000491832		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000455140	ENST00000370708		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000455140	ENST00000370702		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000455140	ENST00000370710		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000455140	ENST00000510989		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000248070	ENST00000370706		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000248070	ENST00000357489		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000248070	ENST00000491832		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000248070	ENST00000370708		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000248070	ENST00000370702		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000248070	ENST00000370710		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000248070	ENST00000510989		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000535753	ENST00000370706		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000535753	ENST00000357489		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000535753	ENST00000491832		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000535753	ENST00000370708		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000535753	ENST00000370702		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000535753	ENST00000370710		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000535753	ENST00000510989		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000594975	ENST00000370706		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000594975	ENST00000357489		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
In-frame	ENST00000594975	ENST00000491832		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000594975	ENST00000370708		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000594975	ENST00000370702		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000594975	ENST00000370710		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
5CDS-intron	ENST00000594975	ENST00000510989		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-3CDS	ENST00000602009	ENST00000370706		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-3CDS	ENST00000602009	ENST00000357489		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-3CDS	ENST00000602009	ENST00000491832		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000602009	ENST00000370708		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000602009	ENST00000370702		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000602009	ENST00000370710		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000602009	ENST00000510989		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-3CDS	ENST00000597937	ENST00000370706		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-3CDS	ENST00000597937	ENST00000357489		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-3CDS	ENST00000597937	ENST00000491832		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000597937	ENST00000370708		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000597937	ENST00000370702		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000597937	ENST00000370710		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
intron-intron	ENST00000597937	ENST00000510989		TCGA	RV	LGG	TCGA-TM-A7CF-01A	EPS15L1	chr19	16495940	-	ZNF451	chr6	57018659	+
Frame-shit	ENST00000326737	ENST00000311160		TCGA	RV	LGG	TCGA-FG-5963-02A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
Frame-shit	ENST00000326737	ENST00000355730		TCGA	RV	LGG	TCGA-FG-5963-02A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
Frame-shit	ENST00000326737	ENST00000398879		TCGA	RV	LGG	TCGA-FG-5963-02A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-intron	ENST00000326737	ENST00000442536		TCGA	RV	LGG	TCGA-FG-5963-02A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-intron	ENST00000326737	ENST00000458317		TCGA	RV	LGG	TCGA-FG-5963-02A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5CDS-intron	ENST00000326737	ENST00000474346		TCGA	RV	LGG	TCGA-FG-5963-02A	HARBI1	chr11	46637118	-	TNS3	chr7	47344601	-
5UTR-3CDS	ENST00000325110	ENST00000196371		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
5UTR-intron	ENST00000325110	ENST00000509987		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
5UTR-intron	ENST00000325110	ENST00000512084		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
5UTR-intron	ENST00000325110	ENST00000510634		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
5UTR-intron	ENST00000325110	ENST00000513081		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
intron-3CDS	ENST00000433297	ENST00000196371		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
intron-intron	ENST00000433297	ENST00000509987		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
intron-intron	ENST00000433297	ENST00000512084		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
intron-intron	ENST00000433297	ENST00000510634		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
intron-intron	ENST00000433297	ENST00000513081		TCGA	RV	LGG	TCGA-E1-5304-01A	HMGCS1	chr5	43307868	-	OXCT1	chr5	41862852	-
In-frame	ENST00000281928	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
In-frame	ENST00000281928	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
In-frame	ENST00000281928	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
In-frame	ENST00000281928	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
In-frame	ENST00000281928	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
In-frame	ENST00000281928	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
In-frame	ENST00000281928	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
5CDS-intron	ENST00000281928	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000547405		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000452455		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000360610		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000441232		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000392934		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000547509		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-3CDS	ENST00000551197	ENST00000361685		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000550501		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000549145		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000553190		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000536007		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000541119		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000545503		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000361466		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000551300		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
intron-intron	ENST00000551197	ENST00000550270		TCGA	RV	LGG	TCGA-E1-5303-01A	MED13L	chr12	116444111	-	MYBPC1	chr12	102061510	+
Frame-shit	ENST00000409261	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409261	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409261	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409213	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409213	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
Frame-shit	ENST00000409213	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000405974	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000405974	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000405974	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000317721	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000317721	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
In-frame	ENST00000317721	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000473859	ENST00000375735		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000473859	ENST00000334267		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
intron-3CDS	ENST00000473859	ENST00000398093		TCGA	RV	LGG	TCGA-FG-5963-02A	NCKAP5	chr2	133971288	-	DYNC2H1	chr11	103306671	+
5CDS-5UTR	ENST00000379145	ENST00000380006		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000379145	ENST00000356721		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000379145	ENST00000394725		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-intron	ENST00000379145	ENST00000573005		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000356768	ENST00000380006		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000356768	ENST00000356721		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000356768	ENST00000394725		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-intron	ENST00000356768	ENST00000573005		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000379144	ENST00000380006		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000379144	ENST00000356721		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-5UTR	ENST00000379144	ENST00000394725		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
5CDS-intron	ENST00000379144	ENST00000573005		TCGA	RV	LGG	TCGA-E1-5304-01A	PCYT1B	chrX	24593247	-	SIAH1	chr16	48396341	-
Frame-shit	ENST00000366574	ENST00000540432		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
Frame-shit	ENST00000366574	ENST00000354777		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
Frame-shit	ENST00000366574	ENST00000262348		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
5CDS-intron	ENST00000366574	ENST00000370976		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
5CDS-intron	ENST00000366574	ENST00000370971		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
5CDS-intron	ENST00000366574	ENST00000491811		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000360064	ENST00000540432		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000360064	ENST00000354777		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000360064	ENST00000262348		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000360064	ENST00000370976		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000360064	ENST00000370971		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000360064	ENST00000491811		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000542537	ENST00000540432		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000542537	ENST00000354777		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000542537	ENST00000262348		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000542537	ENST00000370976		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000542537	ENST00000370971		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000542537	ENST00000491811		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000609119	ENST00000540432		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000609119	ENST00000354777		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-3CDS	ENST00000609119	ENST00000262348		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000609119	ENST00000370976		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000609119	ENST00000370971		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
intron-intron	ENST00000609119	ENST00000491811		TCGA	RV	LGG	TCGA-DU-6542-01A	RYR2	chr1	237205869	+	WLS	chr1	68659910	-
In-frame	ENST00000447399	ENST00000396604		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000447399	ENST00000396602		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000447399	ENST00000530463		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000447399	ENST00000396597		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000447399	ENST00000299606		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000318950	ENST00000396604		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000318950	ENST00000396602		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000318950	ENST00000530463		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000318950	ENST00000396597		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
In-frame	ENST00000318950	ENST00000299606		TCGA	RV	LGG	TCGA-HT-8104-01A	SWAP70	chr11	9754257	+	ZNF143	chr11	9516193	+
5CDS-5UTR	ENST00000301923	ENST00000361906		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000301923	ENST00000361684		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
5CDS-intron	ENST00000301923	ENST00000504337		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000402203	ENST00000361906		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000402203	ENST00000361684		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
5CDS-intron	ENST00000402203	ENST00000504337		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000454349	ENST00000361906		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000454349	ENST00000361684		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-intron	ENST00000454349	ENST00000504337		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000335727	ENST00000361906		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000335727	ENST00000361684		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-intron	ENST00000335727	ENST00000504337		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000497559	ENST00000361906		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000497559	ENST00000361684		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
intron-intron	ENST00000497559	ENST00000504337		TCGA	RV	LGG	TCGA-WY-A859-01A	TNRC6B	chr22	40552186	+	TMEM184B	chr22	38644025	-
Frame-shit	ENST00000300145	ENST00000398455		TCGA	RV	LGG	TCGA-S9-A7R2-01A	XRCC6BP1	chr12	58340859	+	HIGD1C	chr12	51354751	+
intron-3CDS	ENST00000546709	ENST00000398455		TCGA	RV	LGG	TCGA-S9-A7R2-01A	XRCC6BP1	chr12	58340859	+	HIGD1C	chr12	51354751	+
5CDS-5UTR	ENST00000374126	ENST00000374210		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000374126	ENST00000374212		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
5CDS-intron	ENST00000374126	ENST00000496650		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000288466	ENST00000374210		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000288466	ENST00000374212		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
5CDS-intron	ENST00000288466	ENST00000496650		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
intron-5UTR	ENST00000470105	ENST00000374210		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
intron-5UTR	ENST00000470105	ENST00000374212		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
intron-intron	ENST00000470105	ENST00000496650		TCGA	RV	LGG	TCGA-E1-A7YE-01A	ZNF618	chr9	116638693	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000392038	ENST00000526798		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-5UTR	ENST00000392038	ENST00000607544		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-intron	ENST00000392038	ENST00000417606		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000526798		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000607544		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-intron	ENST00000424901	ENST00000417606		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000526798		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000607544		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
5CDS-intron	ENST00000311278	ENST00000417606		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000526798		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000607544		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-intron	ENST00000579047	ENST00000417606		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000526798		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000607544		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-intron	ENST00000581582	ENST00000417606		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	SRRM5	chr19	44101246	+
intron-3CDS	ENST00000298834	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000298834	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000298834	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000298834	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-intron	ENST00000298834	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000426438	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000426438	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000426438	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000426438	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-intron	ENST00000426438	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000314845	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000314845	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000314845	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000314845	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-intron	ENST00000314845	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-3CDS	ENST00000533727	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000533727	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000533727	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000533727	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-intron	ENST00000533727	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-3CDS	ENST00000534300	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000534300	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000534300	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000534300	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-intron	ENST00000534300	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000458649	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000458649	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000458649	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000458649	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-intron	ENST00000458649	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-3CDS	ENST00000528950	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000528950	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000528950	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-5UTR	ENST00000528950	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
5UTR-intron	ENST00000528950	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-3CDS	ENST00000529963	ENST00000263284		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000529963	ENST00000595358		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000529963	ENST00000536603		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-5UTR	ENST00000529963	ENST00000594087		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
intron-intron	ENST00000529963	ENST00000601763		TCGA	RV	LGG	TCGA-DH-5142-01A	AMBRA1	chr11	46615378	-	CCDC61	chr19	46506266	+
Frame-shit	ENST00000308448	ENST00000371930		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5CDS-5UTR	ENST00000308448	ENST00000476963		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
Frame-shit	ENST00000328142	ENST00000371930		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5CDS-5UTR	ENST00000328142	ENST00000476963		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
Frame-shit	ENST00000400215	ENST00000371930		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5CDS-5UTR	ENST00000400215	ENST00000476963		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
Frame-shit	ENST00000541004	ENST00000371930		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5CDS-5UTR	ENST00000541004	ENST00000476963		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5UTR-3CDS	ENST00000495903	ENST00000371930		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5UTR-5UTR	ENST00000495903	ENST00000476963		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89550067	-	ANKRD22	chr10	90583135	-
5UTR-3CDS	ENST00000502976	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000502976	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000502976	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000502976	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000502976	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000502976	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000502976	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000422453	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000422453	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000422453	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000422453	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000422453	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000422453	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000422453	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000451728	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000451728	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000451728	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000451728	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000451728	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000451728	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000451728	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000446936	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000446936	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000446936	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000446936	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000446936	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000446936	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000446936	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000500450	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000500450	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000500450	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000500450	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000500450	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000500450	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000500450	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000504813	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000504813	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000504813	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000504813	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000504813	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000504813	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000504813	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000441626	ENST00000273450		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000441626	ENST00000472186		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000441626	ENST00000452905		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3CDS	ENST00000441626	ENST00000393434		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-3UTR	ENST00000441626	ENST00000393431		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000441626	ENST00000413612		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
5UTR-intron	ENST00000441626	ENST00000455064		TCGA	RV	LGG	TCGA-HT-7858-01A	CNBP	chr3	128902619	-	ALDH1L1	chr3	125831723	-
3UTR-intron	ENST00000483271	ENST00000374761		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
3UTR-intron	ENST00000483271	ENST00000290101		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
3UTR-intron	ENST00000483271	ENST00000374763		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
3UTR-5UTR	ENST00000483271	ENST00000374765		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
3UTR-5UTR	ENST00000483271	ENST00000542643		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
3UTR-5UTR	ENST00000483271	ENST00000374757		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-intron	ENST00000366513	ENST00000374761		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-intron	ENST00000366513	ENST00000290101		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-intron	ENST00000366513	ENST00000374763		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-5UTR	ENST00000366513	ENST00000374765		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-5UTR	ENST00000366513	ENST00000542643		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-5UTR	ENST00000366513	ENST00000374757		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-intron	ENST00000366512	ENST00000374761		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-intron	ENST00000366512	ENST00000290101		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-intron	ENST00000366512	ENST00000374763		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-5UTR	ENST00000366512	ENST00000374765		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-5UTR	ENST00000366512	ENST00000542643		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
5UTR-5UTR	ENST00000366512	ENST00000374757		TCGA	RV	LGG	TCGA-KT-A7W1-01A	CNST	chr1	246729965	+	RAP1GAP	chr1	21952890	-
Frame-shit	ENST00000304062	ENST00000314167		TCGA	RV	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	845762	-
Frame-shit	ENST00000304062	ENST00000511163		TCGA	RV	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	845762	-
5CDS-5UTR	ENST00000304062	ENST00000509566		TCGA	RV	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	845762	-
Frame-shit	ENST00000505203	ENST00000314167		TCGA	RV	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	845762	-
Frame-shit	ENST00000505203	ENST00000511163		TCGA	RV	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	845762	-
5CDS-5UTR	ENST00000505203	ENST00000509566		TCGA	RV	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	845762	-
In-frame	ENST00000394702	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000394702	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000394702	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000331242	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000331242	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000331242	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000413276	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000413276	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000413276	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000411766	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000411766	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000411766	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000432937	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000432937	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000432937	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000394703	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000394703	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5CDS-intron	ENST00000394703	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
intron-3CDS	ENST00000580710	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
intron-3CDS	ENST00000580710	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
intron-intron	ENST00000580710	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5UTR-3CDS	ENST00000414194	ENST00000284136		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5UTR-3CDS	ENST00000414194	ENST00000444867		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
5UTR-intron	ENST00000414194	ENST00000484038		TCGA	RV	LGG	TCGA-FG-5963-01A	DMTF1	chr7	86800405	+	SEMA3D	chr7	84702397	-
In-frame	ENST00000307363	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000307363	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000307363	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
Frame-shit	ENST00000399402	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000399402	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
In-frame	ENST00000445488	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-3UTR	ENST00000445488	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000307377	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3UTR	ENST00000307377	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000379554		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000424273		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000379556		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000528567		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000525218		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3CDS	ENST00000497796	ENST00000530161		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
intron-3UTR	ENST00000497796	ENST00000447214		TCGA	RV	LGG	TCGA-FG-5963-02A	GLB1	chr3	33109722	-	INSC	chr11	15260465	+
5CDS-intron	ENST00000313949	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000313949	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000313949	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000313949	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371098	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371098	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371098	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371098	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371075	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371075	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371075	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371075	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371100	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371100	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371100	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371100	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371099	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371099	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371099	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371099	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371102	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371102	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371102	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371102	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000464624	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000464624	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000464624	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000464624	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000306120	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000306120	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000306120	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000306120	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371095	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371095	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371095	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371095	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371085	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371085	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371085	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371085	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000354359	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000354359	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000354359	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000354359	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000265620	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000265620	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000265620	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000265620	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000306090	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000306090	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000306090	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000306090	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371081	ENST00000371754		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371081	ENST00000469991		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371081	ENST00000371752		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371081	ENST00000396105		TCGA	RV	LGG	TCGA-CS-5395-01A	GNAS	chr20	57486241	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000283928	ENST00000428135		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
In-frame	ENST00000283928	ENST00000409389		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
In-frame	ENST00000283928	ENST00000409604		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
5CDS-intron	ENST00000283928	ENST00000496855		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
intron-3CDS	ENST00000466516	ENST00000428135		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
intron-3CDS	ENST00000466516	ENST00000409389		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
intron-3CDS	ENST00000466516	ENST00000409604		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
intron-intron	ENST00000466516	ENST00000496855		TCGA	RV	LGG	TCGA-DU-A5TY-01A	JAZF1	chr7	28220082	-	SNX13	chr7	17931258	-
Frame-shit	ENST00000343742	ENST00000398675		TCGA	RV	LGG	TCGA-DU-A5TY-01A	LRRK2	chr12	40619442	+	GXYLT1	chr12	42512973	-
Frame-shit	ENST00000343742	ENST00000280876		TCGA	RV	LGG	TCGA-DU-A5TY-01A	LRRK2	chr12	40619442	+	GXYLT1	chr12	42512973	-
Frame-shit	ENST00000298910	ENST00000398675		TCGA	RV	LGG	TCGA-DU-A5TY-01A	LRRK2	chr12	40619442	+	GXYLT1	chr12	42512973	-
Frame-shit	ENST00000298910	ENST00000280876		TCGA	RV	LGG	TCGA-DU-A5TY-01A	LRRK2	chr12	40619442	+	GXYLT1	chr12	42512973	-
intron-3CDS	ENST00000481256	ENST00000398675		TCGA	RV	LGG	TCGA-DU-A5TY-01A	LRRK2	chr12	40619442	+	GXYLT1	chr12	42512973	-
intron-3CDS	ENST00000481256	ENST00000280876		TCGA	RV	LGG	TCGA-DU-A5TY-01A	LRRK2	chr12	40619442	+	GXYLT1	chr12	42512973	-
5CDS-5UTR	ENST00000380338	ENST00000381137		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000380338	ENST00000388918		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000380338	ENST00000381136		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000380338	ENST00000473504		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000355930	ENST00000381137		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5UTR-5UTR	ENST00000355930	ENST00000388918		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000355930	ENST00000381136		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5UTR-intron	ENST00000355930	ENST00000473504		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000429426	ENST00000381137		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000429426	ENST00000388918		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000429426	ENST00000381136		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000429426	ENST00000473504		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-5UTR	ENST00000475957	ENST00000381137		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-5UTR	ENST00000475957	ENST00000388918		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-intron	ENST00000475957	ENST00000381136		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-intron	ENST00000475957	ENST00000473504		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-5UTR	ENST00000380321	ENST00000381137		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-5UTR	ENST00000380321	ENST00000388918		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-intron	ENST00000380321	ENST00000381136		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
intron-intron	ENST00000380321	ENST00000473504		TCGA	RV	LGG	TCGA-VM-A8C8-01A	MLLT3	chr9	20456702	-	TYRP1	chr9	12693912	+
In-frame	ENST00000448418	ENST00000317829		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
In-frame	ENST00000448418	ENST00000317837		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
In-frame	ENST00000448418	ENST00000433060		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
5CDS-3UTR	ENST00000448418	ENST00000539727		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
Frame-shit	ENST00000358117	ENST00000317829		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
Frame-shit	ENST00000358117	ENST00000317837		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
Frame-shit	ENST00000358117	ENST00000433060		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
5CDS-3UTR	ENST00000358117	ENST00000539727		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000524667	ENST00000317829		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000524667	ENST00000317837		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000524667	ENST00000433060		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3UTR	ENST00000524667	ENST00000539727		TCGA	RV	LGG	TCGA-FG-5963-01A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
In-frame	ENST00000356918	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000356918	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000356918	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000356918	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000356918	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510769	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510769	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510769	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510769	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000510769	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000429253	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000429253	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000429253	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000429253	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000429253	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510688	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510688	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510688	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000510688	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000510688	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000511262	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000511262	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000511262	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000511262	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000511262	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000383366	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000383366	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000383366	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000383366	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000383366	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000412440	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000412440	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000412440	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000412440	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000412440	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000507910	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000507910	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000507910	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000507910	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000507910	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000508196	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000508196	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000508196	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000508196	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
5CDS-intron	ENST00000508196	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
intron-3CDS	ENST00000426022	ENST00000392379		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
intron-3CDS	ENST00000426022	ENST00000392378		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
intron-3CDS	ENST00000426022	ENST00000358186		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
intron-3CDS	ENST00000426022	ENST00000441275		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
intron-intron	ENST00000426022	ENST00000476764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	NEK11	chr3	130889731	+	BDH1	chr3	197241287	-
In-frame	ENST00000589123	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000589123	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000589123	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000346156	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000346156	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000346156	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000395111	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000395111	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000395111	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000586919	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000586919	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000586919	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000341919	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000341919	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000341919	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000590282	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000590282	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000590282	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000443272	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
In-frame	ENST00000443272	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000443272	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
intron-3CDS	ENST00000588839	ENST00000292672		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
intron-3CDS	ENST00000588839	ENST00000541430		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
intron-intron	ENST00000588839	ENST00000588101		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFIC	chr19	3382241	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000308159	ENST00000262493		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
Frame-shit	ENST00000308159	ENST00000262494		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
5CDS-intron	ENST00000308159	ENST00000569295		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
Frame-shit	ENST00000569842	ENST00000262493		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
Frame-shit	ENST00000569842	ENST00000262494		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
5CDS-intron	ENST00000569842	ENST00000569295		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-3CDS	ENST00000564887	ENST00000262493		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-3CDS	ENST00000564887	ENST00000262494		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-intron	ENST00000564887	ENST00000569295		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-3CDS	ENST00000569595	ENST00000262493		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-3CDS	ENST00000569595	ENST00000262494		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-intron	ENST00000569595	ENST00000569295		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-3CDS	ENST00000542526	ENST00000262493		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-3CDS	ENST00000542526	ENST00000262494		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
intron-intron	ENST00000542526	ENST00000569295		TCGA	RV	LGG	TCGA-HT-8104-01A	NUP93	chr16	56792567	+	GNAO1	chr16	56309843	+
In-frame	ENST00000262971	ENST00000262961		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000262971	ENST00000591965		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000262971	ENST00000439086		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000262971	ENST00000592398		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
5CDS-intron	ENST00000262971	ENST00000591712		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
intron-3CDS	ENST00000596144	ENST00000262961		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
intron-intron	ENST00000596144	ENST00000591965		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
intron-intron	ENST00000596144	ENST00000439086		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
intron-intron	ENST00000596144	ENST00000592398		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
intron-intron	ENST00000596144	ENST00000591712		TCGA	RV	LGG	TCGA-HT-A5RC-01A	PIAS4	chr19	4013347	+	ZFR2	chr19	3823401	-
In-frame	ENST00000336798	ENST00000508784		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000336798	ENST00000513320		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000336798	ENST00000379448		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000336798	ENST00000511534		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000339394	ENST00000508784		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000339394	ENST00000513320		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000339394	ENST00000379448		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000339394	ENST00000511534		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000471567	ENST00000508784		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000471567	ENST00000513320		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000471567	ENST00000379448		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000471567	ENST00000511534		TCGA	RV	LGG	TCGA-HT-8564-01A	SDC3	chr1	31342314	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000308448	ENST00000361175		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
Frame-shit	ENST00000308448	ENST00000456849		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
Frame-shit	ENST00000308448	ENST00000427144		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5CDS-3UTR	ENST00000308448	ENST00000482258		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
In-frame	ENST00000328142	ENST00000361175		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
In-frame	ENST00000328142	ENST00000456849		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
In-frame	ENST00000328142	ENST00000427144		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5CDS-3UTR	ENST00000328142	ENST00000482258		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
intron-3CDS	ENST00000400215	ENST00000361175		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
intron-3CDS	ENST00000400215	ENST00000456849		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
intron-3CDS	ENST00000400215	ENST00000427144		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
intron-3UTR	ENST00000400215	ENST00000482258		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
Frame-shit	ENST00000541004	ENST00000361175		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
Frame-shit	ENST00000541004	ENST00000456849		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
Frame-shit	ENST00000541004	ENST00000427144		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5CDS-3UTR	ENST00000541004	ENST00000482258		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5UTR-3CDS	ENST00000495903	ENST00000361175		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5UTR-3CDS	ENST00000495903	ENST00000456849		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5UTR-3CDS	ENST00000495903	ENST00000427144		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
5UTR-3UTR	ENST00000495903	ENST00000482258		TCGA	RV	LGG	TCGA-FG-A70Z-01A	ATAD1	chr10	89574195	-	PAPSS2	chr10	89468953	+
Frame-shit	ENST00000419234	ENST00000229402		TCGA	RV	LGG	TCGA-RY-A83Z-01A	BRAP	chr12	112123515	-	KLRB1	chr12	9754195	-
intron-3CDS	ENST00000539060	ENST00000229402		TCGA	RV	LGG	TCGA-RY-A83Z-01A	BRAP	chr12	112123515	-	KLRB1	chr12	9754195	-
intron-3CDS	ENST00000327551	ENST00000229402		TCGA	RV	LGG	TCGA-RY-A83Z-01A	BRAP	chr12	112123515	-	KLRB1	chr12	9754195	-
In-frame	ENST00000397066	ENST00000261592		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
In-frame	ENST00000397066	ENST00000269185		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
5CDS-intron	ENST00000397066	ENST00000535384		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
5CDS-intron	ENST00000397066	ENST00000535475		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
5CDS-intron	ENST00000397066	ENST00000589544		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
5CDS-intron	ENST00000397066	ENST00000538587		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
5CDS-intron	ENST00000397066	ENST00000590846		TCGA	RV	LGG	TCGA-TM-A84I-01A	CCNF	chr16	2489827	+	NOL4	chr18	31673561	-
intron-3CDS	ENST00000376437	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000376437	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000376437	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000376437	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000376437	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000376437	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000376437	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
Frame-shit	ENST00000376442	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
5CDS-intron	ENST00000376442	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
5CDS-intron	ENST00000376442	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
5CDS-intron	ENST00000376442	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
5CDS-intron	ENST00000376442	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
5CDS-intron	ENST00000376442	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
5CDS-intron	ENST00000376442	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000480966	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480966	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480966	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480966	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480966	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480966	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480966	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000477800	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000477800	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000477800	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000477800	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000477800	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000477800	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000477800	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000548461	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000548461	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000548461	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000548461	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000548461	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000548461	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000548461	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000449861	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000449861	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000449861	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000449861	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000449861	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000449861	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000449861	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000417308	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000417308	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000417308	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000417308	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000417308	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000417308	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000417308	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000492529	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000492529	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000492529	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000492529	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000492529	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000492529	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000492529	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000451748	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451748	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451748	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451748	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451748	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451748	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451748	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000424672	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000424672	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000424672	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000424672	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000424672	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000424672	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000424672	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000480637	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480637	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480637	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480637	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480637	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480637	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000480637	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000453879	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000453879	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000453879	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000453879	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000453879	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000453879	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000453879	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000458094	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000458094	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000458094	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000458094	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000458094	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000458094	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000458094	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000462469	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000462469	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000462469	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000462469	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000462469	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000462469	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000462469	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000383576	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383576	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383576	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383576	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383576	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383576	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383576	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000383577	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383577	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383577	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383577	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383577	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383577	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000383577	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000485518	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000485518	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000485518	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000485518	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000485518	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000485518	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000485518	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000414052	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000414052	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000414052	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000414052	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000414052	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000414052	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000414052	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000451456	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451456	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451456	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451456	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451456	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451456	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000451456	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000461170	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000461170	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000461170	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000461170	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000461170	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000461170	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000461170	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000421095	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000421095	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000421095	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000421095	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000421095	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000421095	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000421095	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000445379	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000445379	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000445379	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000445379	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000445379	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000445379	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000445379	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-3CDS	ENST00000481393	ENST00000376630		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000481393	ENST00000415649		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000481393	ENST00000415289		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000481393	ENST00000444683		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000481393	ENST00000383597		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000481393	ENST00000425603		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
intron-intron	ENST00000481393	ENST00000427936		TCGA	RV	LGG	TCGA-TM-A7CF-01A	DHX16	chr6	30638187	-	HLA-E	chr6	30460181	+
Frame-shit	ENST00000301180	ENST00000255674		TCGA	RV	LGG	TCGA-IK-7675-01A	DIP2B	chr12	51102345	+	RTTN	chr18	67795782	-
5CDS-3UTR	ENST00000301180	ENST00000454359		TCGA	RV	LGG	TCGA-IK-7675-01A	DIP2B	chr12	51102345	+	RTTN	chr18	67795782	-
5CDS-3UTR	ENST00000301180	ENST00000437017		TCGA	RV	LGG	TCGA-IK-7675-01A	DIP2B	chr12	51102345	+	RTTN	chr18	67795782	-
5CDS-intron	ENST00000301180	ENST00000579986		TCGA	RV	LGG	TCGA-IK-7675-01A	DIP2B	chr12	51102345	+	RTTN	chr18	67795782	-
5UTR-3CDS	ENST00000418342	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-3UTR	ENST00000418342	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000418342	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000418342	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000418342	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000418342	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-3CDS	ENST00000302291	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-3UTR	ENST00000302291	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000302291	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000302291	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000302291	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000302291	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-3CDS	ENST00000314174	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-3UTR	ENST00000314174	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000314174	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000314174	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000314174	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-intron	ENST00000314174	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
intron-3CDS	ENST00000374623	ENST00000260197		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
intron-3UTR	ENST00000374623	ENST00000532451		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
intron-intron	ENST00000374623	ENST00000525532		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
intron-intron	ENST00000374623	ENST00000532694		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
intron-intron	ENST00000374623	ENST00000534286		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
intron-intron	ENST00000374623	ENST00000527934		TCGA	RV	LGG	TCGA-TM-A84J-01A	LUZP1	chr1	23495259	-	SORL1	chr11	121340716	+
5UTR-5UTR	ENST00000351960	ENST00000312293		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000351960	ENST00000393681		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000351960	ENST00000393679		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000351960	ENST00000393676		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000358965	ENST00000312293		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000358965	ENST00000393681		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000358965	ENST00000393679		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000358965	ENST00000393676		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393695	ENST00000312293		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393695	ENST00000393681		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393695	ENST00000393679		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000393695	ENST00000393676		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000543450	ENST00000312293		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000543450	ENST00000393681		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000543450	ENST00000393679		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5UTR-5UTR	ENST00000543450	ENST00000393676		TCGA	RV	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71780888	-	FOLR1	chr11	71903210	+
5CDS-5UTR	ENST00000361175	ENST00000308448		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000361175	ENST00000328142		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000361175	ENST00000400215		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000361175	ENST00000541004		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000361175	ENST00000495903		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000456849	ENST00000308448		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000456849	ENST00000328142		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000456849	ENST00000400215		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000456849	ENST00000541004		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000456849	ENST00000495903		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000427144	ENST00000308448		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000427144	ENST00000328142		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000427144	ENST00000400215		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000427144	ENST00000541004		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000427144	ENST00000495903		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000482258	ENST00000308448		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000482258	ENST00000328142		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
intron-intron	ENST00000482258	ENST00000400215		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000482258	ENST00000541004		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000482258	ENST00000495903		TCGA	RV	LGG	TCGA-HT-7873-01B	PAPSS2	chr10	89475600	+	ATAD1	chr10	89574369	-
Frame-shit	ENST00000355703	ENST00000346672		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000355703	ENST00000360962		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000355703	ENST00000527634		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000355703	ENST00000540737		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000355703	ENST00000532565		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
Frame-shit	ENST00000355703	ENST00000525449		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
5CDS-intron	ENST00000355703	ENST00000527368		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000531280	ENST00000346672		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000531280	ENST00000360962		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000531280	ENST00000527634		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000531280	ENST00000540737		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000531280	ENST00000532565		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-3CDS	ENST00000531280	ENST00000525449		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
3UTR-intron	ENST00000531280	ENST00000527368		TCGA	RV	LGG	TCGA-HT-7686-01A	PCNXL3	chr11	65398075	+	C11orf80	chr11	66610320	+
5CDS-intron	ENST00000361732	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000361732	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000361732	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000361732	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000361732	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000361732	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000509734	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000509734	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000509734	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000509734	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000509734	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000509734	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354868	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354868	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354868	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354868	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354868	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000354868	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000521422	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000521422	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000521422	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000521422	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000521422	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000521422	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
intron-intron	ENST00000504177	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
intron-intron	ENST00000504177	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
intron-intron	ENST00000504177	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
intron-intron	ENST00000504177	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
intron-intron	ENST00000504177	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
intron-3UTR	ENST00000504177	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354312	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354312	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354312	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354312	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000354312	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000354312	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000345306	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000345306	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000345306	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000345306	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000345306	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000345306	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000305138	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000305138	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000305138	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000305138	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000305138	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000305138	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000282891	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000282891	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000282891	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000282891	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000282891	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000282891	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000358030	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000358030	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000358030	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000358030	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000358030	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000358030	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000380774	ENST00000527185		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000380774	ENST00000528682		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000380774	ENST00000524871		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000380774	ENST00000418526		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-intron	ENST00000380774	ENST00000279463		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
5CDS-3UTR	ENST00000380774	ENST00000524560		TCGA	RV	LGG	TCGA-TM-A84I-01A	RAD17	chr5	68677884	+	CNTN5	chr11	100226848	+
In-frame	ENST00000320476	ENST00000442628		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
5CDS-5UTR	ENST00000320476	ENST00000327830		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
In-frame	ENST00000356994	ENST00000442628		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
5CDS-5UTR	ENST00000356994	ENST00000327830		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
intron-3CDS	ENST00000377533	ENST00000442628		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
intron-5UTR	ENST00000377533	ENST00000327830		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
intron-3CDS	ENST00000546337	ENST00000442628		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
intron-5UTR	ENST00000546337	ENST00000327830		TCGA	RV	LGG	TCGA-HT-A5RC-01A	SCRIB	chr8	144897384	-	NRBP2	chr8	144922401	-
Frame-shit	ENST00000589717	ENST00000263278		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
Frame-shit	ENST00000589717	ENST00000599157		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
5UTR-3CDS	ENST00000355650	ENST00000263278		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
5UTR-3CDS	ENST00000355650	ENST00000599157		TCGA	RV	LGG	TCGA-TM-A7CF-01A	ZNF253	chr19	19976808	+	HSD17B14	chr19	49337615	-
intron-intron	ENST00000245907	ENST00000408982		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000245907	ENST00000262477		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000245907	ENST00000537505		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000245907	ENST00000546142		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000245907	ENST00000341923		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000245907	ENST00000570487		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000599668	ENST00000408982		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000599668	ENST00000262477		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000599668	ENST00000537505		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000599668	ENST00000546142		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000599668	ENST00000341923		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000599668	ENST00000570487		TCGA	RV	LGG	TCGA-DH-5142-01A	C3	chr19	6677846	-	RABEP1	chr17	5283828	+
In-frame	ENST00000341394	ENST00000294244		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CAPRIN1	chr11	34113603	+	C11orf84	chr11	63585277	+
In-frame	ENST00000389645	ENST00000294244		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CAPRIN1	chr11	34113603	+	C11orf84	chr11	63585277	+
In-frame	ENST00000532820	ENST00000294244		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CAPRIN1	chr11	34113603	+	C11orf84	chr11	63585277	+
In-frame	ENST00000530820	ENST00000294244		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CAPRIN1	chr11	34113603	+	C11orf84	chr11	63585277	+
In-frame	ENST00000529307	ENST00000294244		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CAPRIN1	chr11	34113603	+	C11orf84	chr11	63585277	+
3UTR-3CDS	ENST00000533657	ENST00000294244		TCGA	RV	LGG	TCGA-DU-A7T6-01A	CAPRIN1	chr11	34113603	+	C11orf84	chr11	63585277	+
intron-5UTR	ENST00000430710	ENST00000264229		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000430710	ENST00000541073		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000430710	ENST00000504228		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000430710	ENST00000505410		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000399982	ENST00000264229		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399982	ENST00000541073		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399982	ENST00000504228		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000399982	ENST00000505410		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
5UTR-5UTR	ENST00000557364	ENST00000264229		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000557364	ENST00000541073		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000557364	ENST00000504228		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
5UTR-intron	ENST00000557364	ENST00000505410		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-5UTR	ENST00000555962	ENST00000264229		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000555962	ENST00000541073		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000555962	ENST00000504228		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
intron-intron	ENST00000555962	ENST00000505410		TCGA	RV	LGG	TCGA-DU-7302-01A	CHD8	chr14	21924191	-	KIAA1211	chr4	57045450	+
3UTR-intron	ENST00000393892	ENST00000311028		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000393892	ENST00000395923		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000393892	ENST00000220931		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000393892	ENST00000521599		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000393892	ENST00000522951		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000393892	ENST00000519508		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000393892	ENST00000521371		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000311028		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000395923		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000220931		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000521599		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000522951		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000519508		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000472031	ENST00000521371		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000311028		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000395923		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000220931		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000521599		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000522951		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000519508		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000591072	ENST00000521371		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000311028		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000395923		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000220931		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000521599		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000522951		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000519508		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
intron-intron	ENST00000592446	ENST00000521371		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000311028		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000395923		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000220931		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000521599		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000522951		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000519508		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000393888	ENST00000521371		TCGA	RV	LGG	TCGA-DB-5276-01A	CNP	chr17	40127192	+	NCALD	chr8	102813898	-
In-frame	ENST00000254810	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000254810	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000254810	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000254810	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000254810	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000593254	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000593254	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000593254	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000593254	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000593254	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000592643	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000592643	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000592643	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000592643	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000592643	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000591890	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000591890	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000591890	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000591890	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000591890	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000587560	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000587560	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000587560	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000587560	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000587560	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000589599	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000589599	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000589599	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000589599	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000589599	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000586607	ENST00000280326		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000586607	ENST00000503026		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000586607	ENST00000515390		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000586607	ENST00000515676		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
intron-intron	ENST00000586607	ENST00000506600		TCGA	RV	LGG	TCGA-HT-A61C-01A	H3F3B	chr17	73772517	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000328205	ENST00000367265		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
Frame-shit	ENST00000328205	ENST00000367264		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
5CDS-intron	ENST00000328205	ENST00000456180		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
Frame-shit	ENST00000366801	ENST00000367265		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
Frame-shit	ENST00000366801	ENST00000367264		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
5CDS-intron	ENST00000366801	ENST00000456180		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
Frame-shit	ENST00000481685	ENST00000367265		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
Frame-shit	ENST00000481685	ENST00000367264		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
5CDS-intron	ENST00000481685	ENST00000456180		TCGA	RV	LGG	TCGA-CS-5395-01A	LIN9	chr1	226465476	-	KDM5B	chr1	202746222	-
In-frame	ENST00000334527	ENST00000380358		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000334527	ENST00000358181		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000334527	ENST00000330494		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
5CDS-intron	ENST00000334527	ENST00000570758		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000299734	ENST00000380358		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000299734	ENST00000358181		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000299734	ENST00000330494		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
5CDS-intron	ENST00000299734	ENST00000570758		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-3CDS	ENST00000585098	ENST00000380358		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-3CDS	ENST00000585098	ENST00000358181		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-3CDS	ENST00000585098	ENST00000330494		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-intron	ENST00000585098	ENST00000570758		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000380025	ENST00000380358		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000380025	ENST00000358181		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000380025	ENST00000330494		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
5CDS-intron	ENST00000380025	ENST00000570758		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000402554	ENST00000380358		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000402554	ENST00000358181		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
In-frame	ENST00000402554	ENST00000330494		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
5CDS-intron	ENST00000402554	ENST00000570758		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-3CDS	ENST00000583066	ENST00000380358		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-3CDS	ENST00000583066	ENST00000358181		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-3CDS	ENST00000583066	ENST00000330494		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
intron-intron	ENST00000583066	ENST00000570758		TCGA	RV	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7813746	+
Frame-shit	ENST00000337907	ENST00000054666		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5CDS-5UTR	ENST00000337907	ENST00000470357		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
Frame-shit	ENST00000377464	ENST00000054666		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5CDS-5UTR	ENST00000377464	ENST00000470357		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
Frame-shit	ENST00000400907	ENST00000054666		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5CDS-5UTR	ENST00000400907	ENST00000470357		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
Frame-shit	ENST00000400908	ENST00000054666		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5CDS-5UTR	ENST00000400908	ENST00000470357		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5UTR-3CDS	ENST00000476556	ENST00000054666		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5UTR-5UTR	ENST00000476556	ENST00000470357		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5UTR-3CDS	ENST00000460659	ENST00000054666		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5UTR-5UTR	ENST00000460659	ENST00000470357		TCGA	RV	LGG	TCGA-DU-8166-01A	RERE	chr1	8482787	-	VAMP3	chr1	7833502	+
5UTR-3CDS	ENST00000377671	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000377671	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000377671	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000377671	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000396026	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000396026	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000396026	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000396026	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000402618	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000402618	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000402618	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000402618	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000401790	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000401790	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000401790	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000401790	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000538547	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000538547	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000538547	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000538547	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000535822	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-3CDS	ENST00000535822	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000535822	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
5UTR-5UTR	ENST00000535822	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-3CDS	ENST00000316358	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-3CDS	ENST00000316358	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-5UTR	ENST00000316358	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-5UTR	ENST00000316358	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-3CDS	ENST00000462170	ENST00000532114		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-3CDS	ENST00000462170	ENST00000337908		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-5UTR	ENST00000462170	ENST00000355131		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
intron-5UTR	ENST00000462170	ENST00000395016		TCGA	RV	LGG	TCGA-S9-A89V-01A	ZNF133	chr20	18269248	+	MS4A4A	chr11	60059698	+
In-frame	ENST00000373344	ENST00000391705		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5CDS-5UTR	ENST00000373344	ENST00000598744		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5CDS-5UTR	ENST00000373344	ENST00000443917		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5CDS-5UTR	ENST00000373344	ENST00000282286		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
In-frame	ENST00000395603	ENST00000391705		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5CDS-5UTR	ENST00000395603	ENST00000598744		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5CDS-5UTR	ENST00000395603	ENST00000443917		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5CDS-5UTR	ENST00000395603	ENST00000282286		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5UTR-3CDS	ENST00000480283	ENST00000391705		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5UTR-5UTR	ENST00000480283	ENST00000598744		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5UTR-5UTR	ENST00000480283	ENST00000443917		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
5UTR-5UTR	ENST00000480283	ENST00000282286		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
intron-3CDS	ENST00000373341	ENST00000391705		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
intron-5UTR	ENST00000373341	ENST00000598744		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
intron-5UTR	ENST00000373341	ENST00000443917		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
intron-5UTR	ENST00000373341	ENST00000282286		TCGA	RV	LGG	TCGA-CS-6290-01A	ATRX	chrX	77041468	-	ZNF304	chr19	57865093	+
In-frame	ENST00000529230	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000529230	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000529230	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000529230	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000529230	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
In-frame	ENST00000415402	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000415402	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000415402	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000415402	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000415402	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
In-frame	ENST00000312055	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000312055	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000312055	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000312055	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000312055	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
In-frame	ENST00000354558	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000354558	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-intron	ENST00000354558	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000354558	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5CDS-5UTR	ENST00000354558	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-3CDS	ENST00000532321	ENST00000340353		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-intron	ENST00000532321	ENST00000532959		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-intron	ENST00000532321	ENST00000305494		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-5UTR	ENST00000532321	ENST00000535167		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
intron-5UTR	ENST00000532321	ENST00000355734		TCGA	RV	LGG	TCGA-FG-5963-02A	CKAP5	chr11	46797805	-	TMEM135	chr11	86778736	+
5UTR-3UTR	ENST00000261401	ENST00000537532		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000261401	ENST00000539644		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000261401	ENST00000392404		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000261401	ENST00000538932		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000261401	ENST00000337815		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-3UTR	ENST00000541050	ENST00000537532		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000541050	ENST00000539644		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000541050	ENST00000392404		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000541050	ENST00000538932		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000541050	ENST00000337815		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-3UTR	ENST00000549384	ENST00000537532		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000549384	ENST00000539644		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000549384	ENST00000392404		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000549384	ENST00000538932		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000549384	ENST00000337815		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-3UTR	ENST00000421578	ENST00000537532		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000421578	ENST00000539644		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000421578	ENST00000392404		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000421578	ENST00000538932		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000421578	ENST00000337815		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-3UTR	ENST00000420959	ENST00000537532		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000420959	ENST00000539644		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000420959	ENST00000392404		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000420959	ENST00000538932		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000420959	ENST00000337815		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-3UTR	ENST00000549772	ENST00000537532		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000549772	ENST00000539644		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000549772	ENST00000392404		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000549772	ENST00000538932		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
intron-5UTR	ENST00000549772	ENST00000337815		TCGA	RV	LGG	TCGA-HW-A5KL-01A	CORO1C	chr12	109125205	-	ZNF664	chr12	124495928	+
Frame-shit	ENST00000205061	ENST00000283882		TCGA	RV	LGG	TCGA-DU-6542-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000205061	ENST00000564286		TCGA	RV	LGG	TCGA-DU-6542-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000422840	ENST00000283882		TCGA	RV	LGG	TCGA-DU-6542-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000422840	ENST00000564286		TCGA	RV	LGG	TCGA-DU-6542-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000447066	ENST00000283882		TCGA	RV	LGG	TCGA-DU-6542-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000447066	ENST00000564286		TCGA	RV	LGG	TCGA-DU-6542-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75327940	-
intron-intron	ENST00000514455	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000514455	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000514455	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000511566	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000511566	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000511566	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000376817	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000376817	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000376817	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000512805	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000512805	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000512805	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000504726	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000504726	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000504726	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000511900	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000511900	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000511900	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000456394	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000456394	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000456394	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000505461	ENST00000220764		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000505461	ENST00000519007		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000505461	ENST00000522161		TCGA	RV	LGG	TCGA-HW-A5KJ-01A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
In-frame	ENST00000361368	ENST00000355947		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361368	ENST00000349062		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361368	ENST00000354241		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361125	ENST00000355947		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361125	ENST00000349062		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
In-frame	ENST00000361125	ENST00000354241		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
intron-3CDS	ENST00000480055	ENST00000355947		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
intron-3CDS	ENST00000480055	ENST00000349062		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
intron-3CDS	ENST00000480055	ENST00000354241		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	TRIM4	chr7	99507283	-
Frame-shit	ENST00000396037	ENST00000471389		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
In-frame	ENST00000396037	ENST00000394647		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
In-frame	ENST00000396037	ENST00000431610		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
In-frame	ENST00000396037	ENST00000460382		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
In-frame	ENST00000396037	ENST00000463855		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000396037	ENST00000472835		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
In-frame	ENST00000539510	ENST00000471389		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
Frame-shit	ENST00000539510	ENST00000394647		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
Frame-shit	ENST00000539510	ENST00000431610		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
Frame-shit	ENST00000539510	ENST00000460382		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
Frame-shit	ENST00000539510	ENST00000463855		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000539510	ENST00000472835		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000536558	ENST00000471389		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000536558	ENST00000394647		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000536558	ENST00000431610		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000536558	ENST00000460382		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000536558	ENST00000463855		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3UTR	ENST00000536558	ENST00000472835		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000404299	ENST00000471389		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000404299	ENST00000394647		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000404299	ENST00000431610		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000404299	ENST00000460382		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000404299	ENST00000463855		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3UTR	ENST00000404299	ENST00000472835		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000381424	ENST00000471389		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000381424	ENST00000394647		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000381424	ENST00000431610		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000381424	ENST00000460382		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000381424	ENST00000463855		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
intron-3UTR	ENST00000381424	ENST00000472835		TCGA	RV	LGG	TCGA-TM-A84I-01A	ST8SIA1	chr12	22401940	-	FTO	chr16	54145674	+
In-frame	ENST00000506722	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
In-frame	ENST00000506722	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
In-frame	ENST00000506722	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
5CDS-intron	ENST00000506722	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000394537	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000394537	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000394537	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-intron	ENST00000394537	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000357077	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000357077	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000357077	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-intron	ENST00000357077	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000264366	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000264366	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000264366	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-intron	ENST00000264366	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000509550	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000509550	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000509550	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-intron	ENST00000509550	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000510275	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000510275	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000510275	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-intron	ENST00000510275	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000504887	ENST00000458497		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000504887	ENST00000177648		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-3CDS	ENST00000504887	ENST00000504176		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
intron-intron	ENST00000504887	ENST00000505912		TCGA	RV	LGG	TCGA-HT-8104-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113350305	+
3UTR-5UTR	ENST00000426898	ENST00000352456		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-5UTR	ENST00000426898	ENST00000595018		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-5UTR	ENST00000426898	ENST00000392006		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-5UTR	ENST00000426898	ENST00000378215		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-5UTR	ENST00000426898	ENST00000602130		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-5UTR	ENST00000426898	ENST00000593587		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-5UTR	ENST00000426898	ENST00000263367		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-3UTR	ENST00000426898	ENST00000594207		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000352456		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000595018		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000392006		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000378215		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000602130		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000593587		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000425752	ENST00000263367		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000425752	ENST00000594207		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000352456		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000595018		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000392006		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000378215		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000602130		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000593587		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423947	ENST00000263367		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000423947	ENST00000594207		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000352456		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000595018		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000392006		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000378215		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000602130		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000593587		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000435642	ENST00000263367		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000435642	ENST00000594207		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000352456		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000595018		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000392006		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000378215		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000602130		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000593587		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000320560	ENST00000263367		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000320560	ENST00000594207		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000352456		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000595018		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000392006		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000378215		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000602130		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000593587		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000441606	ENST00000263367		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
intron-3UTR	ENST00000441606	ENST00000594207		TCGA	RV	LGG	TCGA-S9-A7R3-01A	ANO6	chr12	45610174	+	HNRNPUL1	chr19	41774128	+
3UTR-intron	ENST00000263645	ENST00000216297		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000263645	ENST00000555943		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000492627	ENST00000216297		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000492627	ENST00000555943		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000381036	ENST00000216297		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000381036	ENST00000555943		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000526072	ENST00000216297		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000526072	ENST00000555943		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524805	ENST00000216297		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524805	ENST00000555943		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000481687	ENST00000216297		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000481687	ENST00000555943		TCGA	RV	LGG	TCGA-FG-5963-02A	CD81	chr11	2418627	+	SUPT16H	chr14	21829491	-
In-frame	ENST00000253055	ENST00000599117		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
In-frame	ENST00000253055	ENST00000432763		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
In-frame	ENST00000253055	ENST00000402194		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
In-frame	ENST00000253055	ENST00000359191		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
In-frame	ENST00000253055	ENST00000598725		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
intron-3CDS	ENST00000593906	ENST00000599117		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
intron-3CDS	ENST00000593906	ENST00000432763		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
intron-3CDS	ENST00000593906	ENST00000402194		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
intron-3CDS	ENST00000593906	ENST00000359191		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
intron-3CDS	ENST00000593906	ENST00000598725		TCGA	RV	LGG	TCGA-S9-A6U0-01A	MAP3K10	chr19	40712064	+	SUPT5H	chr19	39948315	+
intron-intron	ENST00000419333	ENST00000491186		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
intron-intron	ENST00000419333	ENST00000325318		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000292823	ENST00000491186		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000292823	ENST00000325318		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000431016	ENST00000491186		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000431016	ENST00000325318		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000491544	ENST00000491186		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
5UTR-intron	ENST00000491544	ENST00000325318		TCGA	RV	LGG	TCGA-E1-A7YV-01A	PCYT1A	chr3	196014486	-	TCTEX1D2	chr3	196022940	-
Frame-shit	ENST00000316399	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000316399	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000316399	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000396356	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000396356	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000396356	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000352083	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000352083	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000352083	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528252	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528252	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000528252	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000527619	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000527619	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000527619	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528429	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
In-frame	ENST00000528429	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5CDS-3UTR	ENST00000528429	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3CDS	ENST00000533658	ENST00000418331		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3CDS	ENST00000533658	ENST00000440289		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
5UTR-3UTR	ENST00000533658	ENST00000526550		TCGA	RV	LGG	TCGA-FG-5963-01A	SOX6	chr11	16362558	-	PTPRJ	chr11	48134299	+
Frame-shit	ENST00000171887	ENST00000356805		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
Frame-shit	ENST00000171887	ENST00000333896		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
Frame-shit	ENST00000419504	ENST00000356805		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
Frame-shit	ENST00000419504	ENST00000333896		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
Frame-shit	ENST00000430930	ENST00000356805		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
Frame-shit	ENST00000430930	ENST00000333896		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
intron-3CDS	ENST00000310858	ENST00000356805		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
intron-3CDS	ENST00000310858	ENST00000333896		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
intron-3CDS	ENST00000480665	ENST00000356805		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
intron-3CDS	ENST00000480665	ENST00000333896		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TNS1	chr2	218679635	-	SPTBN1	chr2	54826229	+
intron-3CDS	ENST00000537971	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
intron-intron	ENST00000537971	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
5UTR-3CDS	ENST00000011898	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
5UTR-intron	ENST00000011898	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
intron-3CDS	ENST00000407263	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
intron-intron	ENST00000407263	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
intron-3CDS	ENST00000492305	ENST00000331817		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
intron-intron	ENST00000492305	ENST00000552322		TCGA	RV	LGG	TCGA-TM-A84I-01A	TSPAN9	chr12	3192885	+	KRT7	chr12	52628939	+
Frame-shit	ENST00000535572	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
5CDS-5UTR	ENST00000535572	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
Frame-shit	ENST00000537687	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
5CDS-5UTR	ENST00000537687	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
Frame-shit	ENST00000315939	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
5CDS-5UTR	ENST00000315939	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
Frame-shit	ENST00000447667	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
5CDS-5UTR	ENST00000447667	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
Frame-shit	ENST00000530271	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
5CDS-5UTR	ENST00000530271	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
intron-3CDS	ENST00000540360	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
intron-5UTR	ENST00000540360	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
intron-3CDS	ENST00000340908	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
intron-5UTR	ENST00000340908	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
intron-3CDS	ENST00000574564	ENST00000389032		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
intron-5UTR	ENST00000574564	ENST00000539577		TCGA	RV	LGG	TCGA-DU-7007-01A	WNK1	chr12	863490	+	STK38L	chr12	27455070	+
Frame-shit	ENST00000378455	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000378455	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
Frame-shit	ENST00000342274	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000342274	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
intron-3CDS	ENST00000378463	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
intron-3UTR	ENST00000378463	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
In-frame	ENST00000397354	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000397354	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
In-frame	ENST00000378444	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000378444	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-02B	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-intron	ENST00000255409	ENST00000367545		TCGA	RV	LGG	TCGA-S9-A6U0-01A	CHI3L1	chr1	203148059	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000255409	ENST00000367526		TCGA	RV	LGG	TCGA-S9-A6U0-01A	CHI3L1	chr1	203148059	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000255409	ENST00000480333		TCGA	RV	LGG	TCGA-S9-A6U0-01A	CHI3L1	chr1	203148059	-	UTRN	chr6	144665237	+
Frame-shit	ENST00000441788	ENST00000221543		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000441788	ENST00000535102		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-intron	ENST00000441788	ENST00000598789		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000313639	ENST00000221543		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000313639	ENST00000535102		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-intron	ENST00000313639	ENST00000598789		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000395095	ENST00000221543		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000395095	ENST00000535102		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
5CDS-intron	ENST00000395095	ENST00000598789		TCGA	RV	LGG	TCGA-TM-A7CF-02A	FZR1	chr19	3532648	+	TBC1D17	chr19	50390733	+
Frame-shit	ENST00000313949	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000371098	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371075	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371100	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000371099	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371102	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000464624	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000306120	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371095	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371085	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000354359	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000265620	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000306090	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000371081	ENST00000421745		TCGA	RV	LGG	TCGA-CS-6668-01A	GNAS	chr20	57486241	+	BIRC6	chr2	32820101	+
In-frame	ENST00000524717	ENST00000306999		TCGA	RV	LGG	TCGA-TM-A84I-01A	MAML2	chr11	96074547	-	ANKMY2	chr7	16666803	-
5CDS-5UTR	ENST00000524717	ENST00000421746		TCGA	RV	LGG	TCGA-TM-A84I-01A	MAML2	chr11	96074547	-	ANKMY2	chr7	16666803	-
In-frame	ENST00000264639	ENST00000378449		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000264639	ENST00000433649		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000264639	ENST00000268876		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000264639	ENST00000394570		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000264639	ENST00000591048		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000541736	ENST00000378449		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000541736	ENST00000433649		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000541736	ENST00000268876		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000541736	ENST00000394570		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000541736	ENST00000591048		TCGA	RV	LGG	TCGA-P5-A5EV-01A	PSMD3	chr17	38142965	+	UNC45B	chr17	33498341	+
In-frame	ENST00000376929	ENST00000376214		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000376929	ENST00000376213		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000395882		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000304053		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000376208		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000277120		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000323115		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000359847		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000376929	ENST00000395866		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-3CDS	ENST00000506690	ENST00000376214		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-3CDS	ENST00000506690	ENST00000376213		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000395882		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000304053		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000376208		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000277120		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000323115		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000359847		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
intron-intron	ENST00000506690	ENST00000395866		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000389805	ENST00000376214		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000389805	ENST00000376213		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000395882		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000304053		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000376208		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000277120		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000323115		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000359847		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000389805	ENST00000395866		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000402874	ENST00000376214		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000402874	ENST00000376213		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000395882		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000304053		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000376208		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000277120		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000323115		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000359847		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000402874	ENST00000395866		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000510187	ENST00000376214		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000510187	ENST00000376213		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000395882		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000304053		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000376208		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000277120		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000323115		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000359847		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000510187	ENST00000395866		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000360718	ENST00000376214		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
In-frame	ENST00000360718	ENST00000376213		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000395882		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000304053		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000376208		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000277120		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000323115		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000359847		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000360718	ENST00000395866		TCGA	RV	LGG	TCGA-DU-A76L-01A	SQSTM1	chr5	179252226	+	NTRK2	chr9	87549077	+
5CDS-intron	ENST00000437048	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000437048	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000437048	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000437048	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000574029	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000574029	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000574029	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000574029	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-intron	ENST00000576149	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-intron	ENST00000576149	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-intron	ENST00000576149	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-5UTR	ENST00000576149	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000446250	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000446250	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000446250	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-5UTR	ENST00000446250	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000291074	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000571805	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000575800		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000301329		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000301328		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000401468	ENST00000536578		TCGA	RV	LGG	TCGA-HW-7487-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-3CDS	ENST00000388999	ENST00000006275		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000388999	ENST00000588062		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000388999	ENST00000585934		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000388999	ENST00000592647		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
In-frame	ENST00000401500	ENST00000006275		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000401500	ENST00000588062		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
In-frame	ENST00000401500	ENST00000585934		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000401500	ENST00000592647		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
In-frame	ENST00000270301	ENST00000006275		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000270301	ENST00000588062		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
In-frame	ENST00000270301	ENST00000585934		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
Frame-shit	ENST00000270301	ENST00000592647		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000378860	ENST00000006275		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000378860	ENST00000588062		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000378860	ENST00000585934		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
intron-3CDS	ENST00000378860	ENST00000592647		TCGA	RV	LGG	TCGA-TM-A84B-01A	WDR62	chr19	36580208	+	TRAPPC6A	chr19	45668228	-
In-frame	ENST00000326448	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
Frame-shit	ENST00000326448	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000326448	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
Frame-shit	ENST00000483465	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
In-frame	ENST00000483465	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000483465	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
In-frame	ENST00000496589	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
Frame-shit	ENST00000496589	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000496589	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5UTR-3CDS	ENST00000477495	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5UTR-3CDS	ENST00000477495	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5UTR-5UTR	ENST00000477495	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-02A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000302418	ENST00000375400		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000302418	ENST00000375398		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000302418	ENST00000355867		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000302418	ENST00000535393		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000302418	ENST00000460007		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000302418	ENST00000538146		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
intron-5UTR	ENST00000493889	ENST00000375400		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
intron-5UTR	ENST00000493889	ENST00000375398		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
intron-intron	ENST00000493889	ENST00000355867		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
intron-intron	ENST00000493889	ENST00000535393		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
intron-intron	ENST00000493889	ENST00000460007		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
intron-intron	ENST00000493889	ENST00000538146		TCGA	RV	LGG	TCGA-DU-6407-02B	KIF5B	chr10	32337392	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000263257	ENST00000396841		TCGA	RV	LGG	TCGA-DU-8166-01A	NOVA2	chr19	46464268	-	LEUTX	chr19	40275167	+
intron-5UTR	ENST00000599462	ENST00000396841		TCGA	RV	LGG	TCGA-DU-8166-01A	NOVA2	chr19	46464268	-	LEUTX	chr19	40275167	+
5CDS-intron	ENST00000351960	ENST00000233057		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000351960	ENST00000395127		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000351960	ENST00000405334		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000358965	ENST00000233057		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000358965	ENST00000395127		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000358965	ENST00000405334		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393695	ENST00000233057		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393695	ENST00000395127		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393695	ENST00000405334		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000543450	ENST00000233057		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000543450	ENST00000395127		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000543450	ENST00000405334		TCGA	RV	LGG	TCGA-DU-6393-01A	NUMA1	chr11	71713911	-	EIF2AK2	chr2	37342384	-
In-frame	ENST00000325411	ENST00000395555		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000325411	ENST00000494157		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000325411	ENST00000225740		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000325411	ENST00000444455		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000325411	ENST00000457500		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000325411	ENST00000485231		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5UTR-3CDS	ENST00000463318	ENST00000395555		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5UTR-5UTR	ENST00000463318	ENST00000494157		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5UTR-5UTR	ENST00000463318	ENST00000225740		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5UTR-5UTR	ENST00000463318	ENST00000444455		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5UTR-5UTR	ENST00000463318	ENST00000457500		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5UTR-5UTR	ENST00000463318	ENST00000485231		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
In-frame	ENST00000350657	ENST00000395555		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000350657	ENST00000494157		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000350657	ENST00000225740		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000350657	ENST00000444455		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000350657	ENST00000457500		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000350657	ENST00000485231		TCGA	RV	LGG	TCGA-HT-A617-01A	SLC47A2	chr17	19616016	-	ALDH3A1	chr17	19646776	-
5CDS-5UTR	ENST00000436636	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000436636	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000436636	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000436636	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000436636	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000538048	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000538048	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000538048	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000538048	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000538048	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000369326	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000369326	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000369326	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000369326	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000369326	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000341852	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000341852	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000341852	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000341852	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000341852	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000284483	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000284483	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000284483	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000284483	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000284483	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000470834	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000470834	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000470834	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000470834	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000470834	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000460047	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000460047	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000460047	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000460047	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000460047	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000475336	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000475336	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000475336	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000475336	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000475336	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000488470	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000488470	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000488470	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000488470	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000488470	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000357327	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000357327	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000357327	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000357327	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000357327	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000464785	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
intron-3UTR	ENST00000464785	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000464785	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000464785	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
intron-5UTR	ENST00000464785	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000465393	ENST00000420517		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-3UTR	ENST00000465393	ENST00000470361		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000465393	ENST00000452583		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000465393	ENST00000432997		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000465393	ENST00000358316		TCGA	RV	LGG	TCGA-TM-A84B-01A	TNIK	chr3	171087409	-	KCNMB2	chr3	178525131	+
5CDS-5UTR	ENST00000219638	ENST00000233047		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000219638	ENST00000572258		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-3UTR	ENST00000219638	ENST00000574092		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000219638	ENST00000261388		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000219638	ENST00000451578		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000219638	ENST00000572599		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000395878	ENST00000233047		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000395878	ENST00000572258		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-3UTR	ENST00000395878	ENST00000574092		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000395878	ENST00000261388		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000395878	ENST00000451578		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000395878	ENST00000572599		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567212	ENST00000233047		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567212	ENST00000572258		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-3UTR	ENST00000567212	ENST00000574092		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567212	ENST00000261388		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567212	ENST00000451578		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567212	ENST00000572599		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567264	ENST00000233047		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567264	ENST00000572258		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-3UTR	ENST00000567264	ENST00000574092		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567264	ENST00000261388		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567264	ENST00000451578		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
5CDS-5UTR	ENST00000567264	ENST00000572599		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
3UTR-5UTR	ENST00000571064	ENST00000233047		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
3UTR-5UTR	ENST00000571064	ENST00000572258		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
3UTR-3UTR	ENST00000571064	ENST00000574092		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
3UTR-5UTR	ENST00000571064	ENST00000261388		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
3UTR-5UTR	ENST00000571064	ENST00000451578		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
3UTR-5UTR	ENST00000571064	ENST00000572599		TCGA	RV	LGG	TCGA-HT-A5RC-01A	UBFD1	chr16	23570997	+	TMEM159	chr16	21172406	+
intron-3CDS	ENST00000356725	ENST00000254260		TCGA	RV	LGG	TCGA-E1-5304-01A	ZNF790	chr19	37340904	-	RHPN2	chr19	33535270	-
intron-5UTR	ENST00000356725	ENST00000400226		TCGA	RV	LGG	TCGA-E1-5304-01A	ZNF790	chr19	37340904	-	RHPN2	chr19	33535270	-
intron-intron	ENST00000356725	ENST00000588683		TCGA	RV	LGG	TCGA-E1-5304-01A	ZNF790	chr19	37340904	-	RHPN2	chr19	33535270	-
Frame-shit	ENST00000294016	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
5CDS-intron	ENST00000294016	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
5CDS-intron	ENST00000294016	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
5CDS-intron	ENST00000294016	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
5CDS-intron	ENST00000294016	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
5CDS-intron	ENST00000294016	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-3CDS	ENST00000571889	ENST00000381352		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-intron	ENST00000571889	ENST00000405154		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-intron	ENST00000571889	ENST00000542865		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-intron	ENST00000571889	ENST00000541490		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-intron	ENST00000571889	ENST00000282884		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-intron	ENST00000571889	ENST00000538081		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	RASSF8	chr12	26231966	+
intron-3CDS	ENST00000398411	ENST00000280326		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000398411	ENST00000503026		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000398411	ENST00000515390		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000398411	ENST00000515676		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000398411	ENST00000506600		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000376925	ENST00000280326		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000376925	ENST00000503026		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000376925	ENST00000515390		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000376925	ENST00000515676		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
intron-intron	ENST00000376925	ENST00000506600		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000398409	ENST00000280326		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000398409	ENST00000503026		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000398409	ENST00000515390		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000398409	ENST00000515676		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000398409	ENST00000506600		TCGA	RV	LGG	TCGA-DU-6404-01A	CST3	chr20	23614294	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000361445	ENST00000508064		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1L	chr1	207857217	+
5CDS-3UTR	ENST00000361445	ENST00000530905		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1L	chr1	207857217	+
intron-3CDS	ENST00000376838	ENST00000508064		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1L	chr1	207857217	+
intron-3UTR	ENST00000376838	ENST00000530905		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1L	chr1	207857217	+
intron-3CDS	ENST00000495435	ENST00000508064		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1L	chr1	207857217	+
intron-3UTR	ENST00000495435	ENST00000530905		TCGA	RV	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1L	chr1	207857217	+
3UTR-5UTR	ENST00000482399	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
3UTR-5UTR	ENST00000482399	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000445902	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000445902	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5UTR-5UTR	ENST00000478934	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5UTR-5UTR	ENST00000478934	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000436044	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000436044	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000448042	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000448042	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000488583	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000488583	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000441058	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000441058	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000471761	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000471761	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000443860	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000443860	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000483351	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000483351	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000383210	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000383210	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000489236	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000489236	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000485418	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000485418	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000421357	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000421357	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000428608	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000428608	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000484649	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000484649	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-01A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000544604	ENST00000398215		TCGA	RV	LGG	TCGA-HT-A74H-01A	ZNRF3	chr22	29280054	+	CRYBB2	chr22	25617371	+
5UTR-5UTR	ENST00000332811	ENST00000398215		TCGA	RV	LGG	TCGA-HT-A74H-01A	ZNRF3	chr22	29280054	+	CRYBB2	chr22	25617371	+
intron-5UTR	ENST00000402174	ENST00000398215		TCGA	RV	LGG	TCGA-HT-A74H-01A	ZNRF3	chr22	29280054	+	CRYBB2	chr22	25617371	+
intron-5UTR	ENST00000406323	ENST00000398215		TCGA	RV	LGG	TCGA-HT-A74H-01A	ZNRF3	chr22	29280054	+	CRYBB2	chr22	25617371	+
Frame-shit	ENST00000304166	ENST00000342947		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000304166	ENST00000419307		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000304166	ENST00000545231		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000304166	ENST00000409970		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000304166	ENST00000409775		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
5CDS-5UTR	ENST00000304166	ENST00000559637		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409363	ENST00000342947		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409363	ENST00000419307		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409363	ENST00000545231		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409363	ENST00000409970		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409363	ENST00000409775		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
5CDS-5UTR	ENST00000409363	ENST00000559637		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000396211	ENST00000342947		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000396211	ENST00000419307		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000396211	ENST00000545231		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000396211	ENST00000409970		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000396211	ENST00000409775		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
5CDS-5UTR	ENST00000396211	ENST00000559637		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409489	ENST00000342947		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409489	ENST00000419307		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409489	ENST00000545231		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409489	ENST00000409970		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000409489	ENST00000409775		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
5CDS-5UTR	ENST00000409489	ENST00000559637		TCGA	RV	LGG	TCGA-DU-A5TY-01A	ADCYAP1R1	chr7	31132349	+	DFNA5	chr7	24750007	-
Frame-shit	ENST00000392379	ENST00000392766		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
Frame-shit	ENST00000392379	ENST00000392767		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
Frame-shit	ENST00000392379	ENST00000307529		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
Frame-shit	ENST00000392379	ENST00000455345		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
Frame-shit	ENST00000392379	ENST00000392764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
5CDS-intron	ENST00000392379	ENST00000469220		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000392378	ENST00000392766		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000392378	ENST00000392767		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000392378	ENST00000307529		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000392378	ENST00000455345		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000392378	ENST00000392764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
5CDS-intron	ENST00000392378	ENST00000469220		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000358186	ENST00000392766		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000358186	ENST00000392767		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000358186	ENST00000307529		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000358186	ENST00000455345		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000358186	ENST00000392764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
5CDS-intron	ENST00000358186	ENST00000469220		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000441275	ENST00000392766		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000441275	ENST00000392767		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000441275	ENST00000307529		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000441275	ENST00000455345		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000441275	ENST00000392764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
5CDS-intron	ENST00000441275	ENST00000469220		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
intron-3CDS	ENST00000476764	ENST00000392766		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
intron-3CDS	ENST00000476764	ENST00000392767		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
intron-3CDS	ENST00000476764	ENST00000307529		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
intron-3CDS	ENST00000476764	ENST00000455345		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
intron-3CDS	ENST00000476764	ENST00000392764		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
intron-intron	ENST00000476764	ENST00000469220		TCGA	RV	LGG	TCGA-HT-A5RA-01A	BDH1	chr3	197249511	-	ZBBX	chr3	166960431	-
In-frame	ENST00000407071	ENST00000319653		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
5CDS-intron	ENST00000407071	ENST00000545751		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
5CDS-intron	ENST00000407071	ENST00000543681		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
5CDS-intron	ENST00000407071	ENST00000496950		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
In-frame	ENST00000366518	ENST00000319653		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
5CDS-intron	ENST00000366518	ENST00000545751		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
5CDS-intron	ENST00000366518	ENST00000543681		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
5CDS-intron	ENST00000366518	ENST00000496950		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
intron-3CDS	ENST00000479506	ENST00000319653		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
intron-intron	ENST00000479506	ENST00000545751		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
intron-intron	ENST00000479506	ENST00000543681		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
intron-intron	ENST00000479506	ENST00000496950		TCGA	RV	LGG	TCGA-KT-A7W1-01A	KIF26B	chr1	245852109	+	FMN2	chr1	240286479	+
Frame-shit	ENST00000338586	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000338586	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000338586	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000338586	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000338586	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000338586	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000338586	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
In-frame	ENST00000338515	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000338515	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000338515	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000338515	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000338515	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000338515	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000338515	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
In-frame	ENST00000367171	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000367171	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367171	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367171	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367171	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367171	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367171	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
In-frame	ENST00000367169	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000367169	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367169	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367169	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367169	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367169	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367169	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000539706	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000539706	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000539706	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000539706	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000539706	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000539706	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000539706	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000339876	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000339876	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000339876	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000339876	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000339876	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000339876	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000339876	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
In-frame	ENST00000367170	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000367170	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367170	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367170	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367170	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367170	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367170	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000360049	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000360049	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000360049	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000360049	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000360049	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000360049	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000360049	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
In-frame	ENST00000367172	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000367172	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367172	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000367172	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367172	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367172	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000367172	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-3CDS	ENST00000403080	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-3CDS	ENST00000403080	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-intron	ENST00000403080	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-intron	ENST00000403080	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-3UTR	ENST00000403080	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-3UTR	ENST00000403080	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
intron-3UTR	ENST00000403080	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000404076	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000404076	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000404076	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000404076	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000404076	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000404076	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000404076	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000401399	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000401399	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000401399	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000401399	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000401399	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000401399	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000401399	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000404907	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000404907	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000404907	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000404907	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000404907	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000404907	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000404907	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000513543	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
Frame-shit	ENST00000513543	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000513543	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000513543	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000513543	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000513543	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-3UTR	ENST00000513543	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-3CDS	ENST00000495396	ENST00000608999		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-3CDS	ENST00000495396	ENST00000336894		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-intron	ENST00000495396	ENST00000480184		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-intron	ENST00000495396	ENST00000356764		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-3UTR	ENST00000495396	ENST00000290419		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-3UTR	ENST00000495396	ENST00000391959		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
3UTR-3UTR	ENST00000495396	ENST00000367270		TCGA	RV	LGG	TCGA-FG-6688-01A	NFASC	chr1	204957934	+	PPP1R12B	chr1	202531906	+
5CDS-intron	ENST00000369409	ENST00000257497		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000369409	ENST00000376911		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000369409	ENST00000491192		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000369407	ENST00000257497		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000369407	ENST00000376911		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000369407	ENST00000491192		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000482968	ENST00000257497		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000482968	ENST00000376911		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000482968	ENST00000491192		TCGA	RV	LGG	TCGA-FG-6688-01A	PHGDH	chr1	120286836	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000358024	ENST00000555545		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000358024	ENST00000261245		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000358024	ENST00000539616		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000545499	ENST00000555545		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000545499	ENST00000261245		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000545499	ENST00000539616		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
3UTR-intron	ENST00000495538	ENST00000555545		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
3UTR-intron	ENST00000495538	ENST00000261245		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
3UTR-intron	ENST00000495538	ENST00000539616		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000330675	ENST00000555545		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000330675	ENST00000261245		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000330675	ENST00000539616		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000329800	ENST00000555545		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000329800	ENST00000261245		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000329800	ENST00000539616		TCGA	RV	LGG	TCGA-TM-A7C3-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
In-frame	ENST00000415708	ENST00000329841		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000415708	ENST00000346623		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-intron	ENST00000415708	ENST00000557963		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-3UTR	ENST00000415708	ENST00000560555		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000428395	ENST00000329841		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000428395	ENST00000346623		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-intron	ENST00000428395	ENST00000557963		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-3UTR	ENST00000428395	ENST00000560555		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000241502	ENST00000329841		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000241502	ENST00000346623		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-intron	ENST00000241502	ENST00000557963		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-3UTR	ENST00000241502	ENST00000560555		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000424384	ENST00000329841		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
In-frame	ENST00000424384	ENST00000346623		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-intron	ENST00000424384	ENST00000557963		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
5CDS-3UTR	ENST00000424384	ENST00000560555		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
3UTR-3CDS	ENST00000492360	ENST00000329841		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
3UTR-3CDS	ENST00000492360	ENST00000346623		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
3UTR-intron	ENST00000492360	ENST00000557963		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
3UTR-3UTR	ENST00000492360	ENST00000560555		TCGA	RV	LGG	TCGA-E1-5304-01A	FYTTD1	chr3	197505335	+	ALDH1A3	chr15	101427777	+
Frame-shit	ENST00000295591	ENST00000382303		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
5CDS-3UTR	ENST00000295591	ENST00000489369		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
5CDS-3UTR	ENST00000295591	ENST00000382297		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
5CDS-3UTR	ENST00000295591	ENST00000382293		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
Frame-shit	ENST00000335211	ENST00000382303		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
5CDS-3UTR	ENST00000335211	ENST00000489369		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
5CDS-3UTR	ENST00000335211	ENST00000382297		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
5CDS-3UTR	ENST00000335211	ENST00000382293		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
intron-3CDS	ENST00000451870	ENST00000382303		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
intron-3UTR	ENST00000451870	ENST00000489369		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
intron-3UTR	ENST00000451870	ENST00000382297		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
intron-3UTR	ENST00000451870	ENST00000382293		TCGA	RV	LGG	TCGA-DU-8163-01A	IGFN1	chr1	201191955	+	KANK1	chr9	734748	+
In-frame	ENST00000448418	ENST00000317829		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
In-frame	ENST00000448418	ENST00000317837		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
In-frame	ENST00000448418	ENST00000433060		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
5CDS-3UTR	ENST00000448418	ENST00000539727		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
Frame-shit	ENST00000358117	ENST00000317829		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
Frame-shit	ENST00000358117	ENST00000317837		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
Frame-shit	ENST00000358117	ENST00000433060		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
5CDS-3UTR	ENST00000358117	ENST00000539727		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000524667	ENST00000317829		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000524667	ENST00000317837		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000524667	ENST00000433060		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3UTR	ENST00000524667	ENST00000539727		TCGA	RV	LGG	TCGA-FG-5963-02A	MPPED2	chr11	30601793	-	AMOTL1	chr11	94554696	+
intron-3CDS	ENST00000403829	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000403829	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000298687	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000298687	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000350792	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000350792	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000397858	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000397858	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
In-frame	ENST00000554104	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000554104	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000555158	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000555158	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
In-frame	ENST00000553503	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000553503	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
In-frame	ENST00000397853	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000397853	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000360463	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000360463	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000556147	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000556147	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000397856	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000397856	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000397855	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000397855	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000554143	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000554143	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000397851	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000397851	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000397847	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000397847	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000298684	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000298684	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000397844	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000397844	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000554277	ENST00000369002		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
intron-intron	ENST00000554277	ENST00000460009		TCGA	RV	LGG	TCGA-HT-7478-01A	NDRG2	chr14	21484932	-	SEC63	chr6	108214782	-
In-frame	ENST00000371953	ENST00000216962		TCGA	RV	LGG	TCGA-FG-A87N-01A	PTEN	chr10	89693008	+	PYGB	chr20	25249765	+
5CDS-intron	ENST00000371953	ENST00000471359		TCGA	RV	LGG	TCGA-FG-A87N-01A	PTEN	chr10	89693008	+	PYGB	chr20	25249765	+
intron-3CDS	ENST00000472832	ENST00000216962		TCGA	RV	LGG	TCGA-FG-A87N-01A	PTEN	chr10	89693008	+	PYGB	chr20	25249765	+
intron-intron	ENST00000472832	ENST00000471359		TCGA	RV	LGG	TCGA-FG-A87N-01A	PTEN	chr10	89693008	+	PYGB	chr20	25249765	+
Frame-shit	ENST00000255390	ENST00000379044		TCGA	RV	LGG	TCGA-DU-6404-02A	SCO1	chr17	10590044	-	ARX	chrX	25023027	-
Frame-shit	ENST00000577427	ENST00000379044		TCGA	RV	LGG	TCGA-DU-6404-02A	SCO1	chr17	10590044	-	ARX	chrX	25023027	-
intron-3CDS	ENST00000582053	ENST00000379044		TCGA	RV	LGG	TCGA-DU-6404-02A	SCO1	chr17	10590044	-	ARX	chrX	25023027	-
In-frame	ENST00000457823	ENST00000282020		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
5CDS-intron	ENST00000457823	ENST00000505687		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
5CDS-intron	ENST00000457823	ENST00000510992		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
In-frame	ENST00000354268	ENST00000282020		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
5CDS-intron	ENST00000354268	ENST00000505687		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
5CDS-intron	ENST00000354268	ENST00000510992		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
intron-3CDS	ENST00000509418	ENST00000282020		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
intron-intron	ENST00000509418	ENST00000505687		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
intron-intron	ENST00000509418	ENST00000510992		TCGA	RV	LGG	TCGA-DU-A7TD-01A	SMARCAD1	chr4	95174158	+	GRID2	chr4	94547420	+
5UTR-5UTR	ENST00000278795	ENST00000216190		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-intron	ENST00000278795	ENST00000478547		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000278795	ENST00000541106		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000278795	ENST00000405442		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000305958	ENST00000216190		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-intron	ENST00000305958	ENST00000478547		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000305958	ENST00000541106		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000305958	ENST00000405442		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000339123	ENST00000216190		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-intron	ENST00000339123	ENST00000478547		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000339123	ENST00000541106		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000339123	ENST00000405442		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
3UTR-5UTR	ENST00000484515	ENST00000216190		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
3UTR-intron	ENST00000484515	ENST00000478547		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
3UTR-5UTR	ENST00000484515	ENST00000541106		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
3UTR-5UTR	ENST00000484515	ENST00000405442		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000346595	ENST00000216190		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-intron	ENST00000346595	ENST00000478547		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000346595	ENST00000541106		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000346595	ENST00000405442		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000379460	ENST00000216190		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
intron-intron	ENST00000379460	ENST00000478547		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000379460	ENST00000541106		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000379460	ENST00000405442		TCGA	RV	LGG	TCGA-CS-5397-01A	SMOX	chr20	4129624	+	EIF3D	chr22	36922178	-
Frame-shit	ENST00000340666	ENST00000308448		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000340666	ENST00000328142		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000340666	ENST00000400215		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000340666	ENST00000541004		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
5CDS-5UTR	ENST00000340666	ENST00000495903		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
In-frame	ENST00000295987	ENST00000308448		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
In-frame	ENST00000295987	ENST00000328142		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
In-frame	ENST00000295987	ENST00000400215		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
In-frame	ENST00000295987	ENST00000541004		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
5CDS-5UTR	ENST00000295987	ENST00000495903		TCGA	RV	LGG	TCGA-CS-6669-01A	SYN1	chrX	47431303	-	ATAD1	chr10	89552512	-
In-frame	ENST00000263253	ENST00000378455		TCGA	RV	LGG	TCGA-DU-6404-02B	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
In-frame	ENST00000263253	ENST00000342274		TCGA	RV	LGG	TCGA-DU-6404-02B	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000378463		TCGA	RV	LGG	TCGA-DU-6404-02B	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000397354		TCGA	RV	LGG	TCGA-DU-6404-02B	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000378444		TCGA	RV	LGG	TCGA-DU-6404-02B	EP300	chr22	41572532	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000251287	ENST00000346916		TCGA	RV	LGG	TCGA-FG-8187-01A	HCN2	chr19	590577	+	BSG	chr19	579500	+
5CDS-5UTR	ENST00000251287	ENST00000545507		TCGA	RV	LGG	TCGA-FG-8187-01A	HCN2	chr19	590577	+	BSG	chr19	579500	+
5CDS-5UTR	ENST00000251287	ENST00000333511		TCGA	RV	LGG	TCGA-FG-8187-01A	HCN2	chr19	590577	+	BSG	chr19	579500	+
5CDS-5UTR	ENST00000251287	ENST00000353555		TCGA	RV	LGG	TCGA-FG-8187-01A	HCN2	chr19	590577	+	BSG	chr19	579500	+
5CDS-3UTR	ENST00000251287	ENST00000574970		TCGA	RV	LGG	TCGA-FG-8187-01A	HCN2	chr19	590577	+	BSG	chr19	579500	+
Frame-shit	ENST00000381340	ENST00000357103		TCGA	RV	LGG	TCGA-HT-7690-01A	ITPR2	chr12	26943090	-	ADIPOR2	chr12	1882008	+
5CDS-intron	ENST00000381340	ENST00000544470		TCGA	RV	LGG	TCGA-HT-7690-01A	ITPR2	chr12	26943090	-	ADIPOR2	chr12	1882008	+
intron-3CDS	ENST00000545902	ENST00000357103		TCGA	RV	LGG	TCGA-HT-7690-01A	ITPR2	chr12	26943090	-	ADIPOR2	chr12	1882008	+
intron-intron	ENST00000545902	ENST00000544470		TCGA	RV	LGG	TCGA-HT-7690-01A	ITPR2	chr12	26943090	-	ADIPOR2	chr12	1882008	+
Frame-shit	ENST00000242737	ENST00000357103		TCGA	RV	LGG	TCGA-HT-7690-01A	ITPR2	chr12	26943090	-	ADIPOR2	chr12	1882008	+
5CDS-intron	ENST00000242737	ENST00000544470		TCGA	RV	LGG	TCGA-HT-7690-01A	ITPR2	chr12	26943090	-	ADIPOR2	chr12	1882008	+
5CDS-intron	ENST00000338110	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000338110	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000338110	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000338110	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000395248	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000395248	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000395248	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000395248	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000575627	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000575627	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000575627	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000575627	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000566897	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000566897	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000566897	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000566897	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569545	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569545	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569545	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569545	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000563060	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000563060	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000563060	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000563060	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000412304	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000412304	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000412304	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000412304	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000564546	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000564546	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000564546	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-intron	ENST00000564546	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000564595	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000564595	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000564595	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
5CDS-intron	ENST00000564595	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569798	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569798	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569798	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000569798	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000395240	ENST00000375437		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000395240	ENST00000357398		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000395240	ENST00000283256		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
intron-intron	ENST00000395240	ENST00000375427		TCGA	RV	LGG	TCGA-CS-6669-01A	ALDOA	chr16	30081734	+	SCN2A	chr2	166150541	+
3UTR-5UTR	ENST00000460783	ENST00000609713		TCGA	RV	LGG	TCGA-DU-6406-01A	SIM2	chr21	38072221	+	KCNJ6	chr21	39213011	-
3UTR-5UTR	ENST00000460783	ENST00000288309		TCGA	RV	LGG	TCGA-DU-6406-01A	SIM2	chr21	38072221	+	KCNJ6	chr21	39213011	-
5CDS-5UTR	ENST00000290399	ENST00000609713		TCGA	RV	LGG	TCGA-DU-6406-01A	SIM2	chr21	38072221	+	KCNJ6	chr21	39213011	-
5CDS-5UTR	ENST00000290399	ENST00000288309		TCGA	RV	LGG	TCGA-DU-6406-01A	SIM2	chr21	38072221	+	KCNJ6	chr21	39213011	-
5CDS-5UTR	ENST00000430056	ENST00000609713		TCGA	RV	LGG	TCGA-DU-6406-01A	SIM2	chr21	38072221	+	KCNJ6	chr21	39213011	-
5CDS-5UTR	ENST00000430056	ENST00000288309		TCGA	RV	LGG	TCGA-DU-6406-01A	SIM2	chr21	38072221	+	KCNJ6	chr21	39213011	-
intron-3CDS	ENST00000400098	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000400098	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000400098	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000400100	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000400100	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000400100	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
5UTR-3CDS	ENST00000400097	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
5UTR-3CDS	ENST00000400097	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
5UTR-intron	ENST00000400097	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
3UTR-3CDS	ENST00000553597	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
3UTR-3CDS	ENST00000553597	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
3UTR-intron	ENST00000553597	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000390687	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000390687	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000390687	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000346403	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000346403	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000346403	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000554227	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000554227	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000554227	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000577565	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000577565	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000577565	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000444203	ENST00000313077		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-3CDS	ENST00000444203	ENST00000560848		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
intron-intron	ENST00000444203	ENST00000435939		TCGA	RV	LGG	TCGA-KT-A7W1-01A	SNRPN	chr15	25101863	+	CYFIP1	chr15	22939175	+
5UTR-5UTR	ENST00000540266	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
5UTR-5UTR	ENST00000540266	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
5UTR-intron	ENST00000540266	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
3UTR-5UTR	ENST00000539019	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
3UTR-5UTR	ENST00000539019	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
3UTR-intron	ENST00000539019	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000422622	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000422622	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-intron	ENST00000422622	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000242729	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000242729	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-intron	ENST00000242729	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000535504	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000535504	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
intron-intron	ENST00000535504	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	SSPN	chr12	26287963	+	TEAD4	chr12	3103904	+
5CDS-3UTR	ENST00000261716	ENST00000449302		TCGA	RV	LGG	TCGA-TQ-A7RJ-01A	TAOK1	chr17	27838010	+	C17orf105	chr17	41861751	+
5CDS-3UTR	ENST00000536202	ENST00000449302		TCGA	RV	LGG	TCGA-TQ-A7RJ-01A	TAOK1	chr17	27838010	+	C17orf105	chr17	41861751	+
In-frame	ENST00000341511	ENST00000375098		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000341511	ENST00000478530		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000341511	ENST00000342043		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000341511	ENST00000341469		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000341511	ENST00000538344		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
In-frame	ENST00000265662	ENST00000375098		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000265662	ENST00000478530		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000265662	ENST00000342043		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000265662	ENST00000341469		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000265662	ENST00000538344		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
In-frame	ENST00000371605	ENST00000375098		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000371605	ENST00000478530		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000371605	ENST00000342043		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000371605	ENST00000341469		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5CDS-intron	ENST00000371605	ENST00000538344		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5UTR-3CDS	ENST00000492260	ENST00000375098		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5UTR-intron	ENST00000492260	ENST00000478530		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5UTR-intron	ENST00000492260	ENST00000342043		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5UTR-intron	ENST00000492260	ENST00000341469		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
5UTR-intron	ENST00000492260	ENST00000538344		TCGA	RV	LGG	TCGA-E1-5304-01A	ABCA2	chr9	139922527	-	TRIM14	chr9	100862446	-
In-frame	ENST00000302538	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
In-frame	ENST00000302538	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
5CDS-intron	ENST00000302538	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
Frame-shit	ENST00000544583	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
Frame-shit	ENST00000544583	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
5CDS-intron	ENST00000544583	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000572441	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000572441	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-intron	ENST00000572441	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
In-frame	ENST00000574437	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
In-frame	ENST00000574437	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
5CDS-intron	ENST00000574437	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
In-frame	ENST00000291107	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
In-frame	ENST00000291107	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
5CDS-intron	ENST00000291107	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000543210	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000543210	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-intron	ENST00000543210	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000536794	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000536794	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-intron	ENST00000536794	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000573895	ENST00000456935		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-3CDS	ENST00000573895	ENST00000221363		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
intron-intron	ENST00000573895	ENST00000495617		TCGA	RV	LGG	TCGA-DU-6402-01A	ABR	chr17	994905	-	MAN2B1	chr19	12776619	-
Frame-shit	ENST00000544305	ENST00000164640		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000544305	ENST00000393758		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000544305	ENST00000544474		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000544305	ENST00000475140		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
Frame-shit	ENST00000374630	ENST00000164640		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000374630	ENST00000393758		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000374630	ENST00000544474		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000374630	ENST00000475140		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
Frame-shit	ENST00000400191	ENST00000164640		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000400191	ENST00000393758		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000400191	ENST00000544474		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000400191	ENST00000475140		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
Frame-shit	ENST00000374632	ENST00000164640		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000374632	ENST00000393758		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000374632	ENST00000544474		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000374632	ENST00000475140		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
Frame-shit	ENST00000374627	ENST00000164640		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000374627	ENST00000393758		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000374627	ENST00000544474		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000374627	ENST00000475140		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
intron-3CDS	ENST00000465676	ENST00000164640		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
intron-5UTR	ENST00000465676	ENST00000393758		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
intron-intron	ENST00000465676	ENST00000544474		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
intron-5UTR	ENST00000465676	ENST00000475140		TCGA	RV	LGG	TCGA-KT-A7W1-01A	EPHB2	chr1	23111569	+	PDZD4	chrX	153074050	-
5UTR-3CDS	ENST00000539526	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000539526	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000539526	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000539526	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000539526	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000539526	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000539526	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000539526	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000539526	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000540359	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000540359	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000540359	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000540359	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000540359	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000540359	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000540359	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000540359	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000540359	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000260282	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000260282	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000260282	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000260282	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000260282	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000260282	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000260282	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000260282	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000260282	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000527717	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000527717	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000527717	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000527717	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000527717	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000527717	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000527717	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000527717	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000527717	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000526014	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000526014	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000526014	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000526014	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000526014	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000526014	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000526014	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000526014	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000526014	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000524656	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000524656	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000524656	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000524656	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000524656	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000524656	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000524656	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000524656	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000524656	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584394	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584394	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584394	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584394	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584394	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000584394	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000584394	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000584394	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000584394	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000529335	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000529335	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000529335	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000529335	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000529335	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000529335	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000529335	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000529335	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000529335	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000583233	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000583233	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000583233	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000583233	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000583233	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000583233	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000583233	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000583233	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000583233	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000527429	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000527429	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000527429	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000527429	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000527429	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000527429	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000527429	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000527429	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000527429	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000530956	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000530956	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000530956	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000530956	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000530956	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000530956	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000530956	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000530956	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000530956	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584230	ENST00000403222		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584230	ENST00000407373		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584230	ENST00000332585		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584230	ENST00000382310		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000584230	ENST00000446658		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000584230	ENST00000401475		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000584230	ENST00000437268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000584230	ENST00000535268		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000584230	ENST00000496575		TCGA	RV	LGG	TCGA-HT-7686-01A	FXYD6	chr11	117747307	-	OSBP2	chr22	31266416	+
In-frame	ENST00000354831	ENST00000437048		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-intron	ENST00000354831	ENST00000574029		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000354831	ENST00000576149		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000354831	ENST00000446250		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000354831	ENST00000291074		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000354831	ENST00000571805		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000354831	ENST00000401468		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
In-frame	ENST00000352171	ENST00000437048		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-intron	ENST00000352171	ENST00000574029		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000352171	ENST00000576149		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000352171	ENST00000446250		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000352171	ENST00000291074		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000352171	ENST00000571805		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000352171	ENST00000401468		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-3CDS	ENST00000485608	ENST00000437048		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-intron	ENST00000485608	ENST00000574029		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-5UTR	ENST00000485608	ENST00000576149		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-5UTR	ENST00000485608	ENST00000446250		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-5UTR	ENST00000485608	ENST00000291074		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-5UTR	ENST00000485608	ENST00000571805		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5UTR-5UTR	ENST00000485608	ENST00000401468		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
Frame-shit	ENST00000539524	ENST00000437048		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-intron	ENST00000539524	ENST00000574029		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000539524	ENST00000576149		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000539524	ENST00000446250		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000539524	ENST00000291074		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000539524	ENST00000571805		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
5CDS-5UTR	ENST00000539524	ENST00000401468		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-3CDS	ENST00000544028	ENST00000437048		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-intron	ENST00000544028	ENST00000574029		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-5UTR	ENST00000544028	ENST00000576149		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-5UTR	ENST00000544028	ENST00000446250		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-5UTR	ENST00000544028	ENST00000291074		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-5UTR	ENST00000544028	ENST00000571805		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
intron-5UTR	ENST00000544028	ENST00000401468		TCGA	RV	LGG	TCGA-E1-A7YL-01A	NRD1	chr1	52258049	-	VPS53	chr17	440416	-
Frame-shit	ENST00000373344	ENST00000398117		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
Frame-shit	ENST00000373344	ENST00000333681		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000373344	ENST00000590515		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000373344	ENST00000589955		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000373344	ENST00000444484		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
Frame-shit	ENST00000395603	ENST00000398117		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
Frame-shit	ENST00000395603	ENST00000333681		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000395603	ENST00000590515		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000395603	ENST00000589955		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000395603	ENST00000444484		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000480283	ENST00000398117		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5UTR-3CDS	ENST00000480283	ENST00000333681		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5UTR-5UTR	ENST00000480283	ENST00000590515		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5UTR-intron	ENST00000480283	ENST00000589955		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5UTR-intron	ENST00000480283	ENST00000444484		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
intron-3CDS	ENST00000373341	ENST00000398117		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
intron-3CDS	ENST00000373341	ENST00000333681		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
intron-5UTR	ENST00000373341	ENST00000590515		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
intron-intron	ENST00000373341	ENST00000589955		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
intron-intron	ENST00000373341	ENST00000444484		TCGA	RV	LGG	TCGA-DB-A4XF-01A	ATRX	chrX	77041468	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000548249	ENST00000518347		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000548249	ENST00000424248		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000548249	ENST00000262585		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000548249	ENST00000519811		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000548249	ENST00000518806		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000548249	ENST00000523308		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000537439	ENST00000518347		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000537439	ENST00000424248		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000537439	ENST00000262585		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000537439	ENST00000519811		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000537439	ENST00000518806		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000537439	ENST00000523308		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000434715	ENST00000518347		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000434715	ENST00000424248		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000434715	ENST00000262585		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000434715	ENST00000519811		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000434715	ENST00000518806		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000434715	ENST00000523308		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000543672	ENST00000518347		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000543672	ENST00000424248		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000543672	ENST00000262585		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000543672	ENST00000519811		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000543672	ENST00000518806		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
5CDS-intron	ENST00000543672	ENST00000523308		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
intron-intron	ENST00000551400	ENST00000518347		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
intron-intron	ENST00000551400	ENST00000424248		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
intron-intron	ENST00000551400	ENST00000262585		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
intron-intron	ENST00000551400	ENST00000519811		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
intron-intron	ENST00000551400	ENST00000518806		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
intron-intron	ENST00000551400	ENST00000523308		TCGA	RV	LGG	TCGA-P5-A72U-01A	DCTN2	chr12	57925798	-	DENND3	chr8	142160933	+
In-frame	ENST00000326448	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
Frame-shit	ENST00000326448	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000326448	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
Frame-shit	ENST00000483465	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
In-frame	ENST00000483465	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000483465	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
In-frame	ENST00000496589	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
Frame-shit	ENST00000496589	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5CDS-5UTR	ENST00000496589	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5UTR-3CDS	ENST00000477495	ENST00000237696		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5UTR-3CDS	ENST00000477495	ENST00000479756		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
5UTR-5UTR	ENST00000477495	ENST00000498640		TCGA	RV	LGG	TCGA-TQ-A7RK-01A	IFT80	chr3	160093600	-	RARRES1	chr3	158422716	-
intron-3CDS	ENST00000535112	ENST00000280326		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
intron-intron	ENST00000535112	ENST00000503026		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
intron-intron	ENST00000535112	ENST00000515390		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
intron-intron	ENST00000535112	ENST00000515676		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
intron-intron	ENST00000535112	ENST00000506600		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000396076	ENST00000280326		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396076	ENST00000503026		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396076	ENST00000515390		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396076	ENST00000515676		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396076	ENST00000506600		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000350669	ENST00000280326		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000350669	ENST00000503026		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000350669	ENST00000515390		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000350669	ENST00000515676		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000350669	ENST00000506600		TCGA	RV	LGG	TCGA-CS-4943-01A	LDHB	chr12	21788276	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000362003	ENST00000333039		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	PCGF3	chr4	724899	+	NPTXR	chr22	39224517	-
5UTR-3CDS	ENST00000400151	ENST00000333039		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	PCGF3	chr4	724899	+	NPTXR	chr22	39224517	-
3UTR-3CDS	ENST00000482726	ENST00000333039		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	PCGF3	chr4	724899	+	NPTXR	chr22	39224517	-
5UTR-3CDS	ENST00000470161	ENST00000333039		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	PCGF3	chr4	724899	+	NPTXR	chr22	39224517	-
5UTR-3CDS	ENST00000521023	ENST00000333039		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	PCGF3	chr4	724899	+	NPTXR	chr22	39224517	-
5UTR-3CDS	ENST00000505655	ENST00000333039		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	PCGF3	chr4	724899	+	NPTXR	chr22	39224517	-
5UTR-3CDS	ENST00000404138	ENST00000271526		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000404138	ENST00000353233		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3UTR	ENST00000404138	ENST00000491853		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000375647	ENST00000271526		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000375647	ENST00000353233		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3UTR	ENST00000375647	ENST00000491853		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000374651	ENST00000271526		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3CDS	ENST00000374651	ENST00000353233		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
5UTR-3UTR	ENST00000374651	ENST00000491853		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZBTB40	chr1	22778497	+	PRCC	chr1	156752074	+
In-frame	ENST00000336665	ENST00000251296		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000336665	ENST00000473951		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
In-frame	ENST00000304032	ENST00000251296		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000304032	ENST00000473951		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
In-frame	ENST00000409538	ENST00000251296		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000409538	ENST00000473951		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
In-frame	ENST00000428334	ENST00000251296		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000428334	ENST00000473951		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
In-frame	ENST00000409457	ENST00000251296		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
5CDS-intron	ENST00000409457	ENST00000473951		TCGA	RV	LGG	TCGA-DU-8161-01A	AGAP1	chr2	236659132	+	IGSF21	chr1	18554392	+
5CDS-5UTR	ENST00000380191	ENST00000265394		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380191	ENST00000396276		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380191	ENST00000409850		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380191	ENST00000488891		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
intron-5UTR	ENST00000479928	ENST00000265394		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
intron-5UTR	ENST00000479928	ENST00000396276		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
intron-5UTR	ENST00000479928	ENST00000409850		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
intron-5UTR	ENST00000479928	ENST00000488891		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380132	ENST00000265394		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380132	ENST00000396276		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380132	ENST00000409850		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380132	ENST00000488891		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380181	ENST00000265394		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380181	ENST00000396276		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380181	ENST00000409850		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5CDS-5UTR	ENST00000380181	ENST00000488891		TCGA	RV	LGG	TCGA-DU-6401-01A	GDI2	chr10	5842561	-	CPVL	chr7	29160687	-
5UTR-3CDS	ENST00000591471	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000591471	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
3UTR-3CDS	ENST00000589218	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
3UTR-3CDS	ENST00000589218	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000544914	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000544914	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000591417	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000591417	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000592168	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000592168	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000392153	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000392153	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000589392	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000589392	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000324411	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000324411	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000591259	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000591259	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000541583	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000541583	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000591134	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000591134	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000586897	ENST00000595483		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
intron-3CDS	ENST00000586897	ENST00000263368		TCGA	RV	LGG	TCGA-E1-A7YU-01A	HKR1	chr19	37815167	+	BLVRB	chr19	40964452	-
Frame-shit	ENST00000460680	ENST00000420323		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	BAP1	chr3	52439781	-	DNAH1	chr3	52378506	+
5CDS-intron	ENST00000460680	ENST00000466628		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	BAP1	chr3	52439781	-	DNAH1	chr3	52378506	+
Frame-shit	ENST00000296288	ENST00000420323		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	BAP1	chr3	52439781	-	DNAH1	chr3	52378506	+
5CDS-intron	ENST00000296288	ENST00000466628		TCGA	RV	LGG	TCGA-TQ-A7RW-01A	BAP1	chr3	52439781	-	DNAH1	chr3	52378506	+
Frame-shit	ENST00000333039	ENST00000215904		TCGA	RV	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	PDXP	chr22	38061562	+
5CDS-5UTR	ENST00000333039	ENST00000403251		TCGA	RV	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	PDXP	chr22	38061562	+
intron-3CDS	ENST00000515780	ENST00000319540		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000515780	ENST00000273908		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000515780	ENST00000282709		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000449862	ENST00000319540		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000449862	ENST00000273908		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000449862	ENST00000282709		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000508701	ENST00000319540		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000508701	ENST00000273908		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000508701	ENST00000282709		TCGA	RV	LGG	TCGA-HT-8564-01A	TMEM150C	chr4	83483059	-	SCD5	chr4	83626566	-
In-frame	ENST00000350026	ENST00000369110		TCGA	RV	LGG	TCGA-E1-5304-01A	ARID1B	chr6	157150555	+	PREP	chr6	105845802	-
In-frame	ENST00000346085	ENST00000369110		TCGA	RV	LGG	TCGA-E1-5304-01A	ARID1B	chr6	157150555	+	PREP	chr6	105845802	-
In-frame	ENST00000367148	ENST00000369110		TCGA	RV	LGG	TCGA-E1-5304-01A	ARID1B	chr6	157150555	+	PREP	chr6	105845802	-
In-frame	ENST00000275248	ENST00000369110		TCGA	RV	LGG	TCGA-E1-5304-01A	ARID1B	chr6	157150555	+	PREP	chr6	105845802	-
intron-3CDS	ENST00000478761	ENST00000369110		TCGA	RV	LGG	TCGA-E1-5304-01A	ARID1B	chr6	157150555	+	PREP	chr6	105845802	-
5CDS-intron	ENST00000304636	ENST00000313164		TCGA	RV	LGG	TCGA-HT-7882-01A	COL3A1	chr2	189877472	+	C7	chr5	40954982	+
5CDS-intron	ENST00000304636	ENST00000494960		TCGA	RV	LGG	TCGA-HT-7882-01A	COL3A1	chr2	189877472	+	C7	chr5	40954982	+
5CDS-intron	ENST00000317840	ENST00000313164		TCGA	RV	LGG	TCGA-HT-7882-01A	COL3A1	chr2	189877472	+	C7	chr5	40954982	+
5CDS-intron	ENST00000317840	ENST00000494960		TCGA	RV	LGG	TCGA-HT-7882-01A	COL3A1	chr2	189877472	+	C7	chr5	40954982	+
Frame-shit	ENST00000334062	ENST00000316249		TCGA	RV	LGG	TCGA-FG-A711-01A	RASA3	chr13	114817527	-	KCNG2	chr18	77659040	+
5CDS-3UTR	ENST00000334062	ENST00000590307		TCGA	RV	LGG	TCGA-FG-A711-01A	RASA3	chr13	114817527	-	KCNG2	chr18	77659040	+
Frame-shit	ENST00000389544	ENST00000316249		TCGA	RV	LGG	TCGA-FG-A711-01A	RASA3	chr13	114817527	-	KCNG2	chr18	77659040	+
5CDS-3UTR	ENST00000389544	ENST00000590307		TCGA	RV	LGG	TCGA-FG-A711-01A	RASA3	chr13	114817527	-	KCNG2	chr18	77659040	+
In-frame	ENST00000542651	ENST00000316249		TCGA	RV	LGG	TCGA-FG-A711-01A	RASA3	chr13	114817527	-	KCNG2	chr18	77659040	+
5CDS-3UTR	ENST00000542651	ENST00000590307		TCGA	RV	LGG	TCGA-FG-A711-01A	RASA3	chr13	114817527	-	KCNG2	chr18	77659040	+
5UTR-3CDS	ENST00000535829	ENST00000376573		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-5UTR	ENST00000535829	ENST00000545335		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000535829	ENST00000323883		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000535829	ENST00000422321		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-3CDS	ENST00000357529	ENST00000376573		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-5UTR	ENST00000357529	ENST00000545335		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000357529	ENST00000323883		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000357529	ENST00000422321		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
3UTR-3CDS	ENST00000299673	ENST00000376573		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
3UTR-5UTR	ENST00000299673	ENST00000545335		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
3UTR-intron	ENST00000299673	ENST00000323883		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
3UTR-intron	ENST00000299673	ENST00000422321		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
intron-3CDS	ENST00000538135	ENST00000376573		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
intron-5UTR	ENST00000538135	ENST00000545335		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
intron-intron	ENST00000538135	ENST00000323883		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
intron-intron	ENST00000538135	ENST00000422321		TCGA	RV	LGG	TCGA-FG-8185-01A	RIMKLB	chr12	8850893	+	PIP4K2A	chr10	22898646	-
5CDS-5UTR	ENST00000539107	ENST00000536681		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000539107	ENST00000549080		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000539107	ENST00000182377		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000539107	ENST00000547116		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000545336	ENST00000536681		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000545336	ENST00000549080		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000545336	ENST00000182377		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000545336	ENST00000547116		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000381256	ENST00000536681		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000381256	ENST00000549080		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000381256	ENST00000182377		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000381256	ENST00000547116		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000381259	ENST00000536681		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000381259	ENST00000549080		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000381259	ENST00000182377		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000381259	ENST00000547116		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-5UTR	ENST00000540401	ENST00000536681		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-intron	ENST00000540401	ENST00000549080		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-5UTR	ENST00000540401	ENST00000182377		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-intron	ENST00000540401	ENST00000547116		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-5UTR	ENST00000306172	ENST00000536681		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-intron	ENST00000306172	ENST00000549080		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-5UTR	ENST00000306172	ENST00000182377		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
intron-intron	ENST00000306172	ENST00000547116		TCGA	RV	LGG	TCGA-HT-7873-01B	CCDC91	chr12	28412375	+	FAR2	chr12	29423345	+
In-frame	ENST00000595437	ENST00000393198		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000595437	ENST00000608447		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000514264		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000393185		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000513177		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000512737		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000503064		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000393183		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000595437	ENST00000393190		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000376586	ENST00000393198		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000376586	ENST00000608447		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000514264		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000393185		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000513177		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000512737		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000503064		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000393183		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376586	ENST00000393190		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000319562	ENST00000393198		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000319562	ENST00000608447		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000514264		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000393185		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000513177		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000512737		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000503064		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000393183		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000319562	ENST00000393190		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000376581	ENST00000393198		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
In-frame	ENST00000376581	ENST00000608447		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000514264		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000393185		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000513177		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000512737		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000503064		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000393183		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
5CDS-intron	ENST00000376581	ENST00000393190		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000393198		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000608447		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000514264		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000393185		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000513177		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000512737		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000503064		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000393183		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
intron-intron	ENST00000593990	ENST00000393190		TCGA	RV	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1-NME2	chr17	49237341	+
Frame-shit	ENST00000312239	ENST00000294543		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
Frame-shit	ENST00000312239	ENST00000375127		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5CDS-5UTR	ENST00000312239	ENST00000489814		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5CDS-5UTR	ENST00000312239	ENST00000375122		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5UTR-3CDS	ENST00000487117	ENST00000294543		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5UTR-3CDS	ENST00000487117	ENST00000375127		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5UTR-5UTR	ENST00000487117	ENST00000489814		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5UTR-5UTR	ENST00000487117	ENST00000375122		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
Frame-shit	ENST00000375000	ENST00000294543		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
Frame-shit	ENST00000375000	ENST00000375127		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5CDS-5UTR	ENST00000375000	ENST00000489814		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
5CDS-5UTR	ENST00000375000	ENST00000375122		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
intron-3CDS	ENST00000375003	ENST00000294543		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
intron-3CDS	ENST00000375003	ENST00000375127		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
intron-5UTR	ENST00000375003	ENST00000489814		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
intron-5UTR	ENST00000375003	ENST00000375122		TCGA	RV	LGG	TCGA-FG-6692-01A	HP1BP3	chr1	21106305	-	TMCO4	chr1	20063949	-
Frame-shit	ENST00000359680	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000359680	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000453655	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000453655	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000380579	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000380579	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000358231	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000358231	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000458511	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000458511	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000519885	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000519885	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-02A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-5UTR	ENST00000394997	ENST00000216639		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
5CDS-intron	ENST00000394997	ENST00000555067		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
5CDS-5UTR	ENST00000337138	ENST00000216639		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
5CDS-intron	ENST00000337138	ENST00000555067		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
5CDS-5UTR	ENST00000323441	ENST00000216639		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
5CDS-intron	ENST00000323441	ENST00000555067		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
intron-5UTR	ENST00000557538	ENST00000216639		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
intron-intron	ENST00000557538	ENST00000555067		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
intron-5UTR	ENST00000539097	ENST00000216639		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
intron-intron	ENST00000539097	ENST00000555067		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
intron-5UTR	ENST00000557206	ENST00000216639		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
intron-intron	ENST00000557206	ENST00000555067		TCGA	RV	LGG	TCGA-R8-A6MK-01A	HIF1A	chr14	62162557	+	VRK1	chr14	97299804	+
In-frame	ENST00000381602	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381602	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381602	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397962	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000397962	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000309776	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000309776	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000509513	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000509513	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000397959	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000397959	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381591	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381591	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000403354	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000403354	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381607	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381607	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000402736	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000402736	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000602682	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000602682	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381604	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381604	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000381584	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000381584	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000558098	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000558098	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000545619	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000545619	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
In-frame	ENST00000535374	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000535374	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000448662		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000431808		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000284776		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000437304		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000319471		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000449407		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000355634		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000393528		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-3CDS	ENST00000473115	ENST00000418609		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
3UTR-intron	ENST00000473115	ENST00000498125		TCGA	RV	LGG	TCGA-DH-A669-01A	ZMYND11	chr10	293406	+	SORBS2	chr4	186515089	-
5CDS-intron	ENST00000224167	ENST00000322349		TCGA	RV	LGG	TCGA-CS-6665-01A	PTGDS	chr9	139876193	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000224167	ENST00000547833		TCGA	RV	LGG	TCGA-CS-6665-01A	PTGDS	chr9	139876193	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371625	ENST00000322349		TCGA	RV	LGG	TCGA-CS-6665-01A	PTGDS	chr9	139876193	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000371625	ENST00000547833		TCGA	RV	LGG	TCGA-CS-6665-01A	PTGDS	chr9	139876193	+	EEA1	chr12	93229203	-
intron-intron	ENST00000460340	ENST00000322349		TCGA	RV	LGG	TCGA-CS-6665-01A	PTGDS	chr9	139876193	+	EEA1	chr12	93229203	-
intron-intron	ENST00000460340	ENST00000547833		TCGA	RV	LGG	TCGA-CS-6665-01A	PTGDS	chr9	139876193	+	EEA1	chr12	93229203	-
Frame-shit	ENST00000256062	ENST00000354189		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
Frame-shit	ENST00000256062	ENST00000395987		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
Frame-shit	ENST00000256062	ENST00000395990		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
Frame-shit	ENST00000256062	ENST00000320267		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
Frame-shit	ENST00000256062	ENST00000537577		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
Frame-shit	ENST00000256062	ENST00000545133		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5CDS-intron	ENST00000256062	ENST00000557684		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000551659	ENST00000354189		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000551659	ENST00000395987		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000551659	ENST00000395990		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000551659	ENST00000320267		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000551659	ENST00000537577		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000551659	ENST00000545133		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5CDS-intron	ENST00000551659	ENST00000557684		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000552618	ENST00000354189		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000552618	ENST00000395987		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000552618	ENST00000395990		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000552618	ENST00000320267		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000552618	ENST00000537577		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000552618	ENST00000545133		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5CDS-intron	ENST00000552618	ENST00000557684		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-3CDS	ENST00000319685	ENST00000354189		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-3CDS	ENST00000319685	ENST00000395987		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-3CDS	ENST00000319685	ENST00000395990		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-3CDS	ENST00000319685	ENST00000320267		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-3CDS	ENST00000319685	ENST00000537577		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-3CDS	ENST00000319685	ENST00000545133		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5UTR-intron	ENST00000319685	ENST00000557684		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000539277	ENST00000354189		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000539277	ENST00000395987		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000539277	ENST00000395990		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000539277	ENST00000320267		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000539277	ENST00000537577		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
In-frame	ENST00000539277	ENST00000545133		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
5CDS-intron	ENST00000539277	ENST00000557684		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-3CDS	ENST00000381224	ENST00000354189		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-3CDS	ENST00000381224	ENST00000395987		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-3CDS	ENST00000381224	ENST00000395990		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-3CDS	ENST00000381224	ENST00000320267		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-3CDS	ENST00000381224	ENST00000537577		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-3CDS	ENST00000381224	ENST00000545133		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-intron	ENST00000381224	ENST00000557684		TCGA	RV	LGG	TCGA-DU-7007-01A	TMTC1	chr12	29664976	-	CASC1	chr12	25264873	-
intron-intron	ENST00000434909	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000434909	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000434909	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000434909	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000434909	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000434909	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000509504	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000509504	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000509504	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000509504	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000509504	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000509504	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000311813	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000311813	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000311813	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000311813	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000311813	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000311813	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000482461	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000482461	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000482461	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000482461	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000482461	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000482461	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000441328	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000441328	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000441328	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000441328	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000441328	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000441328	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409899	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409899	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409899	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409899	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409899	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409899	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409611	ENST00000445067		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409611	ENST00000369744		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409611	ENST00000369748		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409611	ENST00000466741		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409611	ENST00000524472		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
intron-intron	ENST00000409611	ENST00000529459		TCGA	RV	LGG	TCGA-HT-A5RC-01A	AQP1	chr7	30965131	+	CHI3L2	chr1	111772314	+
In-frame	ENST00000304623	ENST00000233557		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
In-frame	ENST00000304623	ENST00000379852		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
In-frame	ENST00000304623	ENST00000379863		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
In-frame	ENST00000359640	ENST00000233557		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
In-frame	ENST00000359640	ENST00000379852		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
In-frame	ENST00000359640	ENST00000379863		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000511377	ENST00000233557		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000511377	ENST00000379852		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000511377	ENST00000379863		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
5UTR-3CDS	ENST00000458100	ENST00000233557		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
5UTR-3CDS	ENST00000458100	ENST00000379852		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
5UTR-3CDS	ENST00000458100	ENST00000379863		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000503622	ENST00000233557		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000503622	ENST00000379852		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000503622	ENST00000379863		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000495388	ENST00000233557		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000495388	ENST00000379852		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
intron-3CDS	ENST00000495388	ENST00000379863		TCGA	RV	LGG	TCGA-QH-A6XC-01A	CTNND2	chr5	11732248	-	NRBP1	chr2	27656540	+
Frame-shit	ENST00000293872	ENST00000262320		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000293872	ENST00000354866		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000293872	ENST00000481769		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000337351	ENST00000262320		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000337351	ENST00000354866		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000337351	ENST00000481769		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397783	ENST00000262320		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397783	ENST00000354866		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000397783	ENST00000481769		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397780	ENST00000262320		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397780	ENST00000354866		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000397780	ENST00000481769		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5UTR-3CDS	ENST00000494366	ENST00000262320		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5UTR-3CDS	ENST00000494366	ENST00000354866		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
5UTR-5UTR	ENST00000494366	ENST00000481769		TCGA	RV	LGG	TCGA-DU-6407-02B	LUC7L	chr16	270648	-	AXIN1	chr16	364683	-
In-frame	ENST00000261658	ENST00000565975		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000261658	ENST00000311008		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000261658	ENST00000323081		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000261658	ENST00000334536		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000261658	ENST00000352260		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
5CDS-intron	ENST00000261658	ENST00000561868		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000563971	ENST00000565975		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000563971	ENST00000311008		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000563971	ENST00000323081		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000563971	ENST00000334536		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000563971	ENST00000352260		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
5CDS-intron	ENST00000563971	ENST00000561868		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000426842	ENST00000565975		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000426842	ENST00000311008		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000426842	ENST00000323081		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000426842	ENST00000334536		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
In-frame	ENST00000426842	ENST00000352260		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
5CDS-intron	ENST00000426842	ENST00000561868		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
intron-3CDS	ENST00000563082	ENST00000565975		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
intron-3CDS	ENST00000563082	ENST00000311008		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
intron-3CDS	ENST00000563082	ENST00000323081		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
intron-3CDS	ENST00000563082	ENST00000334536		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
intron-3CDS	ENST00000563082	ENST00000352260		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
intron-intron	ENST00000563082	ENST00000561868		TCGA	RV	LGG	TCGA-DU-7006-01A	BFAR	chr16	14749067	+	SPNS1	chr16	28994178	+
Frame-shit	ENST00000308448	ENST00000394375		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000308448	ENST00000608620		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000308448	ENST00000238983		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000308448	ENST00000355843		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
In-frame	ENST00000328142	ENST00000394375		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000328142	ENST00000608620		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000328142	ENST00000238983		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000328142	ENST00000355843		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
In-frame	ENST00000400215	ENST00000394375		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000400215	ENST00000608620		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000400215	ENST00000238983		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000400215	ENST00000355843		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
Frame-shit	ENST00000541004	ENST00000394375		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000541004	ENST00000608620		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000541004	ENST00000238983		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-5UTR	ENST00000541004	ENST00000355843		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5UTR-3CDS	ENST00000495903	ENST00000394375		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5UTR-5UTR	ENST00000495903	ENST00000608620		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5UTR-5UTR	ENST00000495903	ENST00000238983		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5UTR-5UTR	ENST00000495903	ENST00000355843		TCGA	RV	LGG	TCGA-E1-A7YN-01A	ATAD1	chr10	89550067	-	LIPF	chr10	90427044	+
5CDS-3UTR	ENST00000448120	ENST00000542222		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000448120	ENST00000544681		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000448120	ENST00000537087		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000448120	ENST00000229281		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000448120	ENST00000540506		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-3UTR	ENST00000397132	ENST00000542222		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000397132	ENST00000544681		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000397132	ENST00000537087		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000397132	ENST00000229281		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
5CDS-intron	ENST00000397132	ENST00000540506		TCGA	RV	LGG	TCGA-DU-6407-02A	TULP3	chr12	3018746	+	C12orf57	chr12	7054934	+
3UTR-5UTR	ENST00000482399	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
3UTR-5UTR	ENST00000482399	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000445902	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000445902	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5UTR-5UTR	ENST00000478934	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5UTR-5UTR	ENST00000478934	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000436044	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
5CDS-5UTR	ENST00000436044	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000448042	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000448042	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000488583	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000488583	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000441058	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000441058	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000471761	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000471761	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000443860	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000443860	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000483351	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000483351	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000383210	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000383210	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000489236	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000489236	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000485418	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000485418	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000421357	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000421357	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000428608	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000428608	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000484649	ENST00000597229		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
intron-5UTR	ENST00000484649	ENST00000394341		TCGA	RV	LGG	TCGA-TM-A7CF-02A	VPS52	chr6	33231261	-	ZNF358	chr19	7584091	+
In-frame	ENST00000335263	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
Frame-shit	ENST00000424963	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000322340	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
5UTR-3CDS	ENST00000499851	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000342702	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000556807	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000558567	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000299135	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000454394	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
In-frame	ENST00000556511	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
3UTR-3CDS	ENST00000557186	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000545563	ENST00000215886		TCGA	RV	LGG	TCGA-DU-A7TD-01A	WDR20	chr14	102606509	+	LGALS2	chr22	37967938	-
intron-intron	ENST00000348956	ENST00000375437		TCGA	RV	LGG	TCGA-FG-8189-01B	CKB	chr14	103986004	-	SCN2A	chr2	166150541	+
intron-intron	ENST00000348956	ENST00000357398		TCGA	RV	LGG	TCGA-FG-8189-01B	CKB	chr14	103986004	-	SCN2A	chr2	166150541	+
intron-intron	ENST00000348956	ENST00000283256		TCGA	RV	LGG	TCGA-FG-8189-01B	CKB	chr14	103986004	-	SCN2A	chr2	166150541	+
intron-intron	ENST00000348956	ENST00000375427		TCGA	RV	LGG	TCGA-FG-8189-01B	CKB	chr14	103986004	-	SCN2A	chr2	166150541	+
Frame-shit	ENST00000381441	ENST00000381431		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
5CDS-intron	ENST00000381441	ENST00000535450		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
Frame-shit	ENST00000334635	ENST00000381431		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
5CDS-intron	ENST00000334635	ENST00000535450		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
3UTR-3CDS	ENST00000513800	ENST00000381431		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
3UTR-intron	ENST00000513800	ENST00000535450		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
5UTR-3CDS	ENST00000381437	ENST00000381431		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
5UTR-intron	ENST00000381437	ENST00000535450		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
intron-3CDS	ENST00000451288	ENST00000381431		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
intron-intron	ENST00000451288	ENST00000535450		TCGA	RV	LGG	TCGA-CS-6665-01A	DCUN1D4	chr4	52709433	+	SGCB	chr4	52899806	-
Frame-shit	ENST00000355192	ENST00000283928		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
5CDS-5UTR	ENST00000355192	ENST00000466516		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
Frame-shit	ENST00000308259	ENST00000283928		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
5CDS-5UTR	ENST00000308259	ENST00000466516		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
Frame-shit	ENST00000540804	ENST00000283928		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
5CDS-5UTR	ENST00000540804	ENST00000466516		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
Frame-shit	ENST00000535664	ENST00000283928		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
5CDS-5UTR	ENST00000535664	ENST00000466516		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
intron-3CDS	ENST00000538725	ENST00000283928		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
intron-5UTR	ENST00000538725	ENST00000466516		TCGA	RV	LGG	TCGA-DU-A5TY-01A	MSRB3	chr12	65722383	+	JAZF1	chr7	27880486	-
Frame-shit	ENST00000359680	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000359680	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000359680	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000453655	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000453655	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000453655	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000380579	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000380579	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000380579	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000358231	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000358231	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000358231	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
In-frame	ENST00000458511	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000458511	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000458511	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000519885	ENST00000349466		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000519885	ENST00000370186		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000393842		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000359149		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000263519		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000370181		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
5CDS-intron	ENST00000519885	ENST00000460549		TCGA	RV	LGG	TCGA-TQ-A8XE-01A	TRAPPC2	chrX	13737990	-	ATP2B3	chrX	152845436	+
Frame-shit	ENST00000369408	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000369408	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
5CDS-3UTR	ENST00000369408	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
intron-3CDS	ENST00000520886	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
intron-3CDS	ENST00000520886	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
intron-3UTR	ENST00000520886	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000339746	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000339746	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
5CDS-3UTR	ENST00000339746	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000447838	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000447838	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
5CDS-3UTR	ENST00000447838	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000522441	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000522441	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
5CDS-3UTR	ENST00000522441	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000485637	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000485637	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
5CDS-3UTR	ENST00000485637	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000520793	ENST00000414563		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000520793	ENST00000359775		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
5CDS-3UTR	ENST00000520793	ENST00000341375		TCGA	RV	LGG	TCGA-E1-5304-01A	ANKRD6	chr6	90276815	+	ZDHHC14	chr6	158049381	+
Frame-shit	ENST00000378455	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000378455	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
Frame-shit	ENST00000342274	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000342274	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
intron-3CDS	ENST00000378463	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
intron-3UTR	ENST00000378463	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
In-frame	ENST00000397354	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000397354	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
In-frame	ENST00000378444	ENST00000216237		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
5CDS-3UTR	ENST00000378444	ENST00000489136		TCGA	RV	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41605700	+
intron-3CDS	ENST00000586725	ENST00000269142		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
intron-intron	ENST00000586725	ENST00000400466		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
intron-intron	ENST00000586725	ENST00000578121		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
Frame-shit	ENST00000269195	ENST00000269142		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5CDS-intron	ENST00000269195	ENST00000400466		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5CDS-intron	ENST00000269195	ENST00000578121		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
Frame-shit	ENST00000591081	ENST00000269142		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5CDS-intron	ENST00000591081	ENST00000400466		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5CDS-intron	ENST00000591081	ENST00000578121		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5UTR-3CDS	ENST00000537549	ENST00000269142		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5UTR-intron	ENST00000537549	ENST00000400466		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
5UTR-intron	ENST00000537549	ENST00000578121		TCGA	RV	LGG	TCGA-TM-A84I-01A	GALNT1	chr18	33234765	+	TAF4B	chr18	23937654	+
In-frame	ENST00000393125	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000393125	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000393125	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000393125	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000393127	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000393127	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000393127	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000393127	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000282499	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000282499	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000282499	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000282499	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000428631	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000428631	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000428631	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000428631	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000525187	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000525187	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000525187	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000525187	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000530497	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
In-frame	ENST00000530497	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000530497	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
5CDS-intron	ENST00000530497	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-3CDS	ENST00000527669	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-3CDS	ENST00000527669	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-intron	ENST00000527669	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-intron	ENST00000527669	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-3CDS	ENST00000533094	ENST00000534061		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-3CDS	ENST00000533094	ENST00000321955		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-intron	ENST00000533094	ENST00000375944		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-intron	ENST00000533094	ENST00000525171		TCGA	RV	LGG	TCGA-DB-5277-01A	GRIA4	chr11	105732934	+	NAALAD2	chr11	89906992	+
intron-3CDS	ENST00000389794	ENST00000281038		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000389794	ENST00000528850		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
5UTR-3CDS	ENST00000389793	ENST00000281038		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
5UTR-3CDS	ENST00000389793	ENST00000528850		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000536965	ENST00000281038		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000536965	ENST00000528850		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000473037	ENST00000281038		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000473037	ENST00000528850		TCGA	RV	LGG	TCGA-TM-A84I-01A	LYST	chr1	236030143	-	NARS2	chr11	78177059	-
intron-intron	ENST00000267970	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000267970	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000267970	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000267970	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000267970	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000267970	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000267970	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000346495	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000424443	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000561277	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000559494	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558745	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000270189		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000429089		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000220809		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000352041		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000519510		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000429710		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
intron-intron	ENST00000558394	ENST00000524009		TCGA	RV	LGG	TCGA-DU-7013-01A	TSPAN3	chr15	77338372	-	PLAT	chr8	42051245	-
In-frame	ENST00000255608	ENST00000342315		TCGA	RV	LGG	TCGA-FG-A4MU-01B	BTBD2	chr19	1993019	-	OAS2	chr12	113424843	+
In-frame	ENST00000255608	ENST00000392583		TCGA	RV	LGG	TCGA-FG-A4MU-01B	BTBD2	chr19	1993019	-	OAS2	chr12	113424843	+
Frame-shit	ENST00000255608	ENST00000449768		TCGA	RV	LGG	TCGA-FG-A4MU-01B	BTBD2	chr19	1993019	-	OAS2	chr12	113424843	+
intron-3CDS	ENST00000590646	ENST00000342315		TCGA	RV	LGG	TCGA-FG-A4MU-01B	BTBD2	chr19	1993019	-	OAS2	chr12	113424843	+
intron-3CDS	ENST00000590646	ENST00000392583		TCGA	RV	LGG	TCGA-FG-A4MU-01B	BTBD2	chr19	1993019	-	OAS2	chr12	113424843	+
intron-3CDS	ENST00000590646	ENST00000449768		TCGA	RV	LGG	TCGA-FG-A4MU-01B	BTBD2	chr19	1993019	-	OAS2	chr12	113424843	+
In-frame	ENST00000548411	ENST00000546136		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000548411	ENST00000381381		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000548411	ENST00000309359		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000548411	ENST00000451604		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000548411	ENST00000537393		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000548411	ENST00000541536		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000548411	ENST00000396007		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000548411	ENST00000545921		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000548411	ENST00000541847		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000548411	ENST00000441133		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000548411	ENST00000536850		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000281474	ENST00000546136		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000281474	ENST00000381381		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000281474	ENST00000309359		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000281474	ENST00000451604		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000281474	ENST00000537393		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000281474	ENST00000541536		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000281474	ENST00000396007		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000281474	ENST00000545921		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000281474	ENST00000541847		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000281474	ENST00000441133		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000281474	ENST00000536850		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
Frame-shit	ENST00000551848	ENST00000546136		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
Frame-shit	ENST00000551848	ENST00000381381		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
Frame-shit	ENST00000551848	ENST00000309359		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
Frame-shit	ENST00000551848	ENST00000451604		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
Frame-shit	ENST00000551848	ENST00000537393		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
Frame-shit	ENST00000551848	ENST00000541536		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551848	ENST00000396007		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551848	ENST00000545921		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551848	ENST00000541847		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551848	ENST00000441133		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551848	ENST00000536850		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000550207	ENST00000546136		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000550207	ENST00000381381		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000550207	ENST00000309359		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000550207	ENST00000451604		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000550207	ENST00000537393		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000550207	ENST00000541536		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000550207	ENST00000396007		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000550207	ENST00000545921		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000550207	ENST00000541847		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000550207	ENST00000441133		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000550207	ENST00000536850		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000551086	ENST00000546136		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000551086	ENST00000381381		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000551086	ENST00000309359		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000551086	ENST00000451604		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000551086	ENST00000537393		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000551086	ENST00000541536		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551086	ENST00000396007		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551086	ENST00000545921		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551086	ENST00000541847		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551086	ENST00000441133		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
5CDS-intron	ENST00000551086	ENST00000536850		TCGA	RV	LGG	TCGA-DU-7007-01A	BICD1	chr12	32260478	+	SOX5	chr12	23818498	-
In-frame	ENST00000545260	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000545260	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000545693	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000545693	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000350537	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000350537	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000346874	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000346874	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374789	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374789	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374790	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374790	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374794	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374794	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374788	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374788	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000466092	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000466092	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374776	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374776	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000340077	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000340077	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000544292	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000544292	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374773	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374773	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000374768	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000374768	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-02A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000296824	ENST00000264932		TCGA	RV	LGG	TCGA-S9-A6UA-01A	CCDC127	chr5	216844	-	SDHA	chr5	233592	+
In-frame	ENST00000296824	ENST00000504309		TCGA	RV	LGG	TCGA-S9-A6UA-01A	CCDC127	chr5	216844	-	SDHA	chr5	233592	+
In-frame	ENST00000296824	ENST00000510361		TCGA	RV	LGG	TCGA-S9-A6UA-01A	CCDC127	chr5	216844	-	SDHA	chr5	233592	+
5CDS-intron	ENST00000296824	ENST00000507522		TCGA	RV	LGG	TCGA-S9-A6UA-01A	CCDC127	chr5	216844	-	SDHA	chr5	233592	+
5CDS-3UTR	ENST00000379987	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000379987	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000379987	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000379987	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000379987	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000379987	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453617	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453617	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453617	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453617	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453617	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000453617	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000427316	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000427316	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000427316	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000427316	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000427316	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000427316	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000514622	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000514622	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000514622	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000514622	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000514622	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000514622	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000305572	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000305572	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000305572	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000305572	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000305572	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000305572	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000506666	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000506666	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000506666	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000506666	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000506666	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000506666	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000513430	ENST00000515255		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000513430	ENST00000394730		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000513430	ENST00000515279		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000513430	ENST00000360505		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000513430	ENST00000394728		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
intron-intron	ENST00000513430	ENST00000507281		TCGA	RV	LGG	TCGA-QH-A6CV-01A	NPNT	chr4	106819158	+	GSTCD	chr4	106744111	+
In-frame	ENST00000327987	ENST00000335449		TCGA	RV	LGG	TCGA-DB-5277-01A	IGDCC3	chr15	65667435	-	GLDN	chr15	51675982	+
In-frame	ENST00000327987	ENST00000396399		TCGA	RV	LGG	TCGA-DB-5277-01A	IGDCC3	chr15	65667435	-	GLDN	chr15	51675982	+
intron-3CDS	ENST00000559231	ENST00000335449		TCGA	RV	LGG	TCGA-DB-5277-01A	IGDCC3	chr15	65667435	-	GLDN	chr15	51675982	+
intron-3CDS	ENST00000559231	ENST00000396399		TCGA	RV	LGG	TCGA-DB-5277-01A	IGDCC3	chr15	65667435	-	GLDN	chr15	51675982	+
intron-intron	ENST00000403829	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000403829	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000403829	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000403829	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000403829	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000403829	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298687	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298687	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298687	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298687	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298687	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298687	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000350792	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000350792	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000350792	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000350792	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000350792	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000350792	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397858	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397858	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397858	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397858	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397858	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397858	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554104	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554104	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554104	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554104	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554104	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554104	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000555158	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000555158	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000555158	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000555158	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000555158	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000555158	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000553503	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000553503	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000553503	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000553503	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000553503	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000553503	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397853	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397853	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397853	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397853	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397853	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397853	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000360463	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000360463	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000360463	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000360463	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000360463	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000360463	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000556147	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000556147	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000556147	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000556147	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000556147	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000556147	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397856	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397856	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397856	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397856	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397856	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397856	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397855	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397855	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397855	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397855	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397855	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397855	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554143	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554143	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554143	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554143	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554143	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000554143	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397851	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397851	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397851	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397851	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397851	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397851	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397847	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397847	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397847	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397847	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397847	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000397847	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298684	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298684	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298684	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298684	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298684	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000298684	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397844	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397844	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397844	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397844	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397844	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000397844	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000554277	ENST00000408982		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000554277	ENST00000262477		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000554277	ENST00000537505		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000554277	ENST00000546142		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000554277	ENST00000341923		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000554277	ENST00000570487		TCGA	RV	LGG	TCGA-E1-5319-01A	NDRG2	chr14	21484932	-	RABEP1	chr17	5283828	+
In-frame	ENST00000356770	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000356770	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000356770	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000356770	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
Frame-shit	ENST00000394830	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
Frame-shit	ENST00000394830	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
Frame-shit	ENST00000394830	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000394830	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000296302	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000296302	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000296302	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000296302	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000337303	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000337303	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000337303	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000337303	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000410007	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000410007	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000410007	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000410007	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409057	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409057	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409057	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000409057	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409114	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409114	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409114	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000409114	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409767	ENST00000264170		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409767	ENST00000375773		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000409767	ENST00000409512		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
5CDS-intron	ENST00000409767	ENST00000410015		TCGA	RV	LGG	TCGA-HT-7477-01B	PBRM1	chr3	52692215	-	KYNU	chr2	143742653	+
In-frame	ENST00000398073	ENST00000375001		TCGA	RV	LGG	TCGA-IK-7675-01A	CTDSP2	chr12	58240155	-	COL15A1	chr9	101759216	+
5CDS-intron	ENST00000398073	ENST00000467052		TCGA	RV	LGG	TCGA-IK-7675-01A	CTDSP2	chr12	58240155	-	COL15A1	chr9	101759216	+
In-frame	ENST00000548823	ENST00000375001		TCGA	RV	LGG	TCGA-IK-7675-01A	CTDSP2	chr12	58240155	-	COL15A1	chr9	101759216	+
5CDS-intron	ENST00000548823	ENST00000467052		TCGA	RV	LGG	TCGA-IK-7675-01A	CTDSP2	chr12	58240155	-	COL15A1	chr9	101759216	+
intron-3CDS	ENST00000547701	ENST00000375001		TCGA	RV	LGG	TCGA-IK-7675-01A	CTDSP2	chr12	58240155	-	COL15A1	chr9	101759216	+
intron-intron	ENST00000547701	ENST00000467052		TCGA	RV	LGG	TCGA-IK-7675-01A	CTDSP2	chr12	58240155	-	COL15A1	chr9	101759216	+
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	LGG	TCGA-S9-A6WH-01A	IL27RA	chr19	14160126	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	LGG	TCGA-S9-A6WH-01A	IL27RA	chr19	14160126	+	RLN3	chr19	14141522	+
5UTR-5UTR	ENST00000341426	ENST00000378609		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000341426	ENST00000472614		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000341991	ENST00000378609		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000341991	ENST00000472614		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000378625	ENST00000378609		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000378625	ENST00000472614		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000344463	ENST00000378609		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000344463	ENST00000472614		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000492768	ENST00000378609		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
5UTR-5UTR	ENST00000492768	ENST00000472614		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000342348	ENST00000378609		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
intron-5UTR	ENST00000342348	ENST00000472614		TCGA	RV	LGG	TCGA-HT-7468-01A	NADK	chr1	1709728	-	GNB1	chr1	1770677	-
5CDS-intron	ENST00000401642	ENST00000306888		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SCFD2	chr4	54139993	-	LNX1	chr4	54457682	-
5CDS-5UTR	ENST00000401642	ENST00000263925		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SCFD2	chr4	54139993	-	LNX1	chr4	54457682	-
5CDS-5UTR	ENST00000401642	ENST00000504605		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SCFD2	chr4	54139993	-	LNX1	chr4	54457682	-
5CDS-intron	ENST00000388940	ENST00000306888		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SCFD2	chr4	54139993	-	LNX1	chr4	54457682	-
5CDS-5UTR	ENST00000388940	ENST00000263925		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SCFD2	chr4	54139993	-	LNX1	chr4	54457682	-
5CDS-5UTR	ENST00000388940	ENST00000504605		TCGA	RV	LGG	TCGA-E1-A7YI-01A	SCFD2	chr4	54139993	-	LNX1	chr4	54457682	-
5CDS-5UTR	ENST00000302277	ENST00000393593		TCGA	RV	LGG	TCGA-HT-7477-01B	ZNF804A	chr2	185463797	+	IRF2	chr4	185350224	-
5CDS-5UTR	ENST00000302277	ENST00000512020		TCGA	RV	LGG	TCGA-HT-7477-01B	ZNF804A	chr2	185463797	+	IRF2	chr4	185350224	-
In-frame	ENST00000321524	ENST00000396037		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000321524	ENST00000539510		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000321524	ENST00000536558		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000321524	ENST00000404299		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000321524	ENST00000381424		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5UTR-3CDS	ENST00000543041	ENST00000396037		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5UTR-3CDS	ENST00000543041	ENST00000539510		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5UTR-intron	ENST00000543041	ENST00000536558		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5UTR-intron	ENST00000543041	ENST00000404299		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5UTR-intron	ENST00000543041	ENST00000381424		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000228843	ENST00000396037		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000228843	ENST00000539510		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000228843	ENST00000536558		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000228843	ENST00000404299		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000228843	ENST00000381424		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000352618	ENST00000396037		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000352618	ENST00000539510		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000352618	ENST00000536558		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000352618	ENST00000404299		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000352618	ENST00000381424		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000544927	ENST00000396037		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000544927	ENST00000539510		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000544927	ENST00000536558		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000544927	ENST00000404299		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
5CDS-intron	ENST00000544927	ENST00000381424		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
intron-3CDS	ENST00000544931	ENST00000396037		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
intron-3CDS	ENST00000544931	ENST00000539510		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
intron-intron	ENST00000544931	ENST00000536558		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
intron-intron	ENST00000544931	ENST00000404299		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
intron-intron	ENST00000544931	ENST00000381424		TCGA	RV	LGG	TCGA-CS-4943-01A	RAD51AP1	chr12	4648122	+	ST8SIA1	chr12	22402032	-
In-frame	ENST00000360265	ENST00000376214		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000376213		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000395882		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000304053		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000376208		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000277120		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000323115		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000359847		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000360265	ENST00000395866		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000376214		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000376213		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000395882		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000304053		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000376208		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000277120		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000323115		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000359847		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000358461	ENST00000395866		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000376214		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000376213		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000395882		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000304053		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000376208		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000277120		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000323115		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000359847		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000420658	ENST00000395866		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000376214		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000376213		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000395882		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000304053		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000376208		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000277120		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000323115		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000359847		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
In-frame	ENST00000382543	ENST00000395866		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000376214		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000376213		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000395882		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000304053		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000376208		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000277120		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000323115		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000359847		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000513842	ENST00000395866		TCGA	RV	LGG	TCGA-HT-7680-01A	AFAP1	chr4	7780489	-	NTRK2	chr9	87356807	+
5UTR-3CDS	ENST00000264229	ENST00000401642		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
5UTR-intron	ENST00000264229	ENST00000388940		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-3CDS	ENST00000541073	ENST00000401642		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-intron	ENST00000541073	ENST00000388940		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-3CDS	ENST00000504228	ENST00000401642		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-intron	ENST00000504228	ENST00000388940		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-3CDS	ENST00000505410	ENST00000401642		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-intron	ENST00000505410	ENST00000388940		TCGA	RV	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	57045596	+	SCFD2	chr4	53773758	-
intron-5UTR	ENST00000336314	ENST00000338483		TCGA	RV	LGG	TCGA-E1-A7Z4-01A	LARP1	chr5	154135753	+	MAFF	chr22	38609830	+
intron-intron	ENST00000336314	ENST00000538999		TCGA	RV	LGG	TCGA-E1-A7Z4-01A	LARP1	chr5	154135753	+	MAFF	chr22	38609830	+
intron-5UTR	ENST00000336314	ENST00000538320		TCGA	RV	LGG	TCGA-E1-A7Z4-01A	LARP1	chr5	154135753	+	MAFF	chr22	38609830	+
intron-5UTR	ENST00000336314	ENST00000426621		TCGA	RV	LGG	TCGA-E1-A7Z4-01A	LARP1	chr5	154135753	+	MAFF	chr22	38609830	+
intron-5UTR	ENST00000336314	ENST00000407965		TCGA	RV	LGG	TCGA-E1-A7Z4-01A	LARP1	chr5	154135753	+	MAFF	chr22	38609830	+
5UTR-3CDS	ENST00000238855	ENST00000402291		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238855	ENST00000356719		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238855	ENST00000295031		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238855	ENST00000453873		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-intron	ENST00000238855	ENST00000482513		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000422803	ENST00000402291		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000422803	ENST00000356719		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000422803	ENST00000295031		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000422803	ENST00000453873		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-intron	ENST00000422803	ENST00000482513		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238856	ENST00000402291		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238856	ENST00000356719		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238856	ENST00000295031		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-3CDS	ENST00000238856	ENST00000453873		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
5UTR-intron	ENST00000238856	ENST00000482513		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409933	ENST00000402291		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409933	ENST00000356719		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409933	ENST00000295031		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409933	ENST00000453873		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-intron	ENST00000409933	ENST00000482513		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409183	ENST00000402291		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409183	ENST00000356719		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409183	ENST00000295031		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000409183	ENST00000453873		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-intron	ENST00000409183	ENST00000482513		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000487769	ENST00000402291		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000487769	ENST00000356719		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000487769	ENST00000295031		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000487769	ENST00000453873		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-intron	ENST00000487769	ENST00000482513		TCGA	RV	LGG	TCGA-DU-A7TJ-01A	AFTPH	chr2	64751746	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000455600	ENST00000268251		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-3CDS	ENST00000455600	ENST00000396600		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000455600	ENST00000563215		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000455600	ENST00000567812		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000455600	ENST00000425191		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000455600	ENST00000569156		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-3CDS	ENST00000468041	ENST00000268251		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-3CDS	ENST00000468041	ENST00000396600		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000468041	ENST00000563215		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000468041	ENST00000567812		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000468041	ENST00000425191		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
intron-intron	ENST00000468041	ENST00000569156		TCGA	RV	LGG	TCGA-CS-5397-01A	RUSC2	chr9	35490169	+	ABAT	chr16	8857926	+
In-frame	ENST00000428559	ENST00000538352		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
In-frame	ENST00000428559	ENST00000025399		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
In-frame	ENST00000428559	ENST00000419869		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
In-frame	ENST00000532964	ENST00000538352		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
In-frame	ENST00000532964	ENST00000025399		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
In-frame	ENST00000532964	ENST00000419869		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
intron-3CDS	ENST00000526530	ENST00000538352		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
intron-3CDS	ENST00000526530	ENST00000025399		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
intron-3CDS	ENST00000526530	ENST00000419869		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
intron-3CDS	ENST00000532573	ENST00000538352		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
intron-3CDS	ENST00000532573	ENST00000025399		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
intron-3CDS	ENST00000532573	ENST00000419869		TCGA	RV	LGG	TCGA-E1-A7YU-01A	DERA	chr12	16064348	+	STRAP	chr12	16053881	+
In-frame	ENST00000377244	ENST00000530444		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
In-frame	ENST00000377244	ENST00000536065		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000377244	ENST00000432175		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000377244	ENST00000301896		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
In-frame	ENST00000352068	ENST00000530444		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
In-frame	ENST00000352068	ENST00000536065		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000352068	ENST00000432175		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000352068	ENST00000301896		TCGA	RV	LGG	TCGA-HT-7686-01A	SNX15	chr11	64795108	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000508803	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000508803	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382892	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382892	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382891	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382891	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382895	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382895	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000482415	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000482415	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000382888	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000382888	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000514045	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000514045	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000436793	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000436793	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000420906	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000420906	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000503128	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000503128	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000398261	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000398261	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-02A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000462705	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000393785	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000481632	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000471418	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000357258	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000464560	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000488663	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000474710	ENST00000498645		TCGA	RV	LGG	TCGA-E1-5307-01A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115571464	-
Frame-shit	ENST00000361368	ENST00000312891		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
Frame-shit	ENST00000361125	ENST00000312891		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
intron-3CDS	ENST00000480055	ENST00000312891		TCGA	RV	LGG	TCGA-FG-5963-01A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
In-frame	ENST00000372811	ENST00000294507		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000372811	ENST00000476492		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
5UTR-3CDS	ENST00000420632	ENST00000294507		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
5UTR-5UTR	ENST00000420632	ENST00000476492		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
In-frame	ENST00000372809	ENST00000294507		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000372809	ENST00000476492		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
intron-3CDS	ENST00000480630	ENST00000294507		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
intron-5UTR	ENST00000480630	ENST00000476492		TCGA	RV	LGG	TCGA-CS-6188-01A	MFSD2A	chr1	40421057	+	LAPTM5	chr1	31215396	-
In-frame	ENST00000373566	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000373566	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000373566	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000373566	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000373563	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000373563	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000373563	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000373563	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409480	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409480	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409480	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409480	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409547	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409547	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409547	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409547	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409196	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409196	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409196	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409196	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409451	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000409451	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409451	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000409451	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
intron-3CDS	ENST00000482666	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
intron-3CDS	ENST00000482666	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
intron-5UTR	ENST00000482666	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
intron-5UTR	ENST00000482666	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000452341	ENST00000264051		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000452341	ENST00000373552		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000452341	ENST00000539537		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
5CDS-5UTR	ENST00000452341	ENST00000409079		TCGA	RV	LGG	TCGA-P5-A72U-01A	GIGYF2	chr2	233684695	+	NGEF	chr2	233759626	-
In-frame	ENST00000544305	ENST00000392302		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000544305	ENST00000368196		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000544305	ENST00000524377		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000544305	ENST00000358660		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000544305	ENST00000531606		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374630	ENST00000392302		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374630	ENST00000368196		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374630	ENST00000524377		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374630	ENST00000358660		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000374630	ENST00000531606		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000400191	ENST00000392302		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000400191	ENST00000368196		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000400191	ENST00000524377		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000400191	ENST00000358660		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000400191	ENST00000531606		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374632	ENST00000392302		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374632	ENST00000368196		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374632	ENST00000524377		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374632	ENST00000358660		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000374632	ENST00000531606		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374627	ENST00000392302		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374627	ENST00000368196		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374627	ENST00000524377		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
In-frame	ENST00000374627	ENST00000358660		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000374627	ENST00000531606		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
intron-3CDS	ENST00000465676	ENST00000392302		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
intron-3CDS	ENST00000465676	ENST00000368196		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
intron-3CDS	ENST00000465676	ENST00000524377		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
intron-3CDS	ENST00000465676	ENST00000358660		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
intron-intron	ENST00000465676	ENST00000531606		TCGA	RV	LGG	TCGA-TM-A84J-01A	EPHB2	chr1	23111569	+	NTRK1	chr1	156843425	+
5UTR-3CDS	ENST00000395159	ENST00000341162		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000395159	ENST00000534938		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000395159	ENST00000553615		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000216463	ENST00000341162		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000216463	ENST00000534938		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000216463	ENST00000553615		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555593	ENST00000341162		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555593	ENST00000534938		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555593	ENST00000553615		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000556007	ENST00000341162		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000556007	ENST00000534938		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
5UTR-3CDS	ENST00000556007	ENST00000553615		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555061	ENST00000341162		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555061	ENST00000534938		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555061	ENST00000553615		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555404	ENST00000341162		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555404	ENST00000534938		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
intron-3CDS	ENST00000555404	ENST00000553615		TCGA	RV	LGG	TCGA-DU-7006-01A	TIMM9	chr14	58890726	-	FCF1	chr14	75189975	+
In-frame	ENST00000398844	ENST00000342202		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
In-frame	ENST00000398844	ENST00000340313		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
Frame-shit	ENST00000398844	ENST00000394216		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
Frame-shit	ENST00000398844	ENST00000394217		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
In-frame	ENST00000322887	ENST00000342202		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
In-frame	ENST00000322887	ENST00000340313		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
Frame-shit	ENST00000322887	ENST00000394216		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
Frame-shit	ENST00000322887	ENST00000394217		TCGA	RV	LGG	TCGA-VM-A8CD-01A	SEC24A	chr5	133984863	+	KCNK7	chr11	65361345	-
In-frame	ENST00000550746	ENST00000297161		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
In-frame	ENST00000550746	ENST00000426693		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
5CDS-intron	ENST00000550746	ENST00000494786		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
In-frame	ENST00000319106	ENST00000297161		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
In-frame	ENST00000319106	ENST00000426693		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
5CDS-intron	ENST00000319106	ENST00000494786		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
In-frame	ENST00000485960	ENST00000297161		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
In-frame	ENST00000485960	ENST00000426693		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
5CDS-intron	ENST00000485960	ENST00000494786		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
5UTR-3CDS	ENST00000393309	ENST00000297161		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
5UTR-3CDS	ENST00000393309	ENST00000426693		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
5UTR-intron	ENST00000393309	ENST00000494786		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
intron-3CDS	ENST00000548679	ENST00000297161		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
intron-3CDS	ENST00000548679	ENST00000426693		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
intron-intron	ENST00000548679	ENST00000494786		TCGA	RV	LGG	TCGA-DU-A5TY-01A	TBC1D15	chr12	72266783	+	BMPER	chr7	33976901	+
Frame-shit	ENST00000284320	ENST00000360029		TCGA	RV	LGG	TCGA-CS-4943-01A	TOMM70A	chr3	100119470	-	KCTD8	chr4	44177267	-
Frame-shit	ENST00000481110	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
Frame-shit	ENST00000481110	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5CDS-intron	ENST00000481110	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000440486	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000440486	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5CDS-intron	ENST00000440486	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000412135	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000412135	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5CDS-intron	ENST00000412135	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000340107	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000340107	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5CDS-intron	ENST00000340107	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000260795	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000260795	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5CDS-intron	ENST00000260795	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000352904	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
In-frame	ENST00000352904	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5CDS-intron	ENST00000352904	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
intron-3CDS	ENST00000474521	ENST00000359227		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
intron-3CDS	ENST00000474521	ENST00000438662		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
intron-intron	ENST00000474521	ENST00000592218		TCGA	RV	LGG	TCGA-CS-6186-01A	FGFR3	chr4	1808661	+	ELAVL3	chr19	11577642	-
5UTR-3CDS	ENST00000368089	ENST00000273986		TCGA	RV	LGG	TCGA-E1-5304-01A	KCNJ10	chr1	160039812	-	CISD2	chr4	103806373	+
5UTR-3CDS	ENST00000368089	ENST00000503643		TCGA	RV	LGG	TCGA-E1-5304-01A	KCNJ10	chr1	160039812	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000509700	ENST00000273986		TCGA	RV	LGG	TCGA-E1-5304-01A	KCNJ10	chr1	160039812	-	CISD2	chr4	103806373	+
intron-3CDS	ENST00000509700	ENST00000503643		TCGA	RV	LGG	TCGA-E1-5304-01A	KCNJ10	chr1	160039812	-	CISD2	chr4	103806373	+
5UTR-3CDS	ENST00000586178	ENST00000225298		TCGA	RV	LGG	TCGA-F6-A8O4-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49362606	+
intron-3CDS	ENST00000415868	ENST00000225298		TCGA	RV	LGG	TCGA-F6-A8O4-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49362606	+
5UTR-3CDS	ENST00000376381	ENST00000225298		TCGA	RV	LGG	TCGA-F6-A8O4-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49362606	+
intron-3CDS	ENST00000593259	ENST00000225298		TCGA	RV	LGG	TCGA-F6-A8O4-01A	MBTD1	chr17	49336504	-	UTP18	chr17	49362606	+
In-frame	ENST00000337344	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
5CDS-3UTR	ENST00000337344	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
In-frame	ENST00000375477	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
5CDS-3UTR	ENST00000375477	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
In-frame	ENST00000375479	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
5CDS-3UTR	ENST00000375479	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
intron-3CDS	ENST00000493650	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
intron-3UTR	ENST00000493650	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
intron-3CDS	ENST00000375459	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
intron-3UTR	ENST00000375459	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
In-frame	ENST00000246505	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
5CDS-3UTR	ENST00000246505	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
intron-3CDS	ENST00000375457	ENST00000243563		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
intron-3UTR	ENST00000375457	ENST00000599570		TCGA	RV	LGG	TCGA-E1-A7Z2-01A	PCID2	chr13	113862913	-	SNRPA	chr19	41265336	+
In-frame	ENST00000302538	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-5UTR	ENST00000302538	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
Frame-shit	ENST00000544583	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-5UTR	ENST00000544583	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000544583	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000544583	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000544583	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
In-frame	ENST00000574437	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-5UTR	ENST00000574437	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000574437	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000574437	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000574437	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
In-frame	ENST00000291107	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-5UTR	ENST00000291107	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000291107	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000291107	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000291107	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	RV	LGG	TCGA-HT-7693-01A	ABR	chr17	982570	-	YWHAE	chr17	1268352	-
In-frame	ENST00000265441	ENST00000284629		TCGA	RV	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116962961	-	ASZ1	chr7	117066989	-
3UTR-3CDS	ENST00000504776	ENST00000379611		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
3UTR-5UTR	ENST00000504776	ENST00000512261		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
3UTR-5UTR	ENST00000504776	ENST00000506442		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
3UTR-5UTR	ENST00000504776	ENST00000395557		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
3UTR-intron	ENST00000504776	ENST00000503027		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
Frame-shit	ENST00000308234	ENST00000379611		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-5UTR	ENST00000308234	ENST00000512261		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-5UTR	ENST00000308234	ENST00000506442		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-5UTR	ENST00000308234	ENST00000395557		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-intron	ENST00000308234	ENST00000503027		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
Frame-shit	ENST00000513185	ENST00000379611		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-5UTR	ENST00000513185	ENST00000512261		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-5UTR	ENST00000513185	ENST00000506442		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-5UTR	ENST00000513185	ENST00000395557		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
5CDS-intron	ENST00000513185	ENST00000503027		TCGA	RV	LGG	TCGA-TQ-A7RM-01A	RGMB	chr5	98109910	+	CCDC112	chr5	114620605	-
In-frame	ENST00000397121	ENST00000330915		TCGA	RV	LGG	TCGA-P5-A77X-01A	ZNF676	chr19	22375818	-	KANK3	chr19	8389980	-
In-frame	ENST00000397121	ENST00000593649		TCGA	RV	LGG	TCGA-P5-A77X-01A	ZNF676	chr19	22375818	-	KANK3	chr19	8389980	-
In-frame	ENST00000545260	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000545260	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000545693	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000545693	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000350537	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000350537	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000346874	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000346874	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374789	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374789	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374790	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374790	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374794	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374794	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374788	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374788	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000466092	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000466092	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374776	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374776	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000340077	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000340077	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000544292	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000544292	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374773	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
In-frame	ENST00000374773	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000374768	ENST00000343470		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
intron-3CDS	ENST00000374768	ENST00000452476		TCGA	RV	LGG	TCGA-DH-A669-01A	PARD3	chr10	35103804	-	LYAR	chr4	4276496	-
5CDS-intron	ENST00000393386	ENST00000368682		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000354650		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000229471		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000368667		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000368678		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000229470		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000356013		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000538466		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000393386	ENST00000476769		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000368682		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000354650		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000229471		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000368667		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000368678		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000229470		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000356013		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000538466		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5CDS-intron	ENST00000449182	ENST00000476769		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000368682		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000354650		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000229471		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000368667		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000368678		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000229470		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000356013		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000538466		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
intron-intron	ENST00000483028	ENST00000476769		TCGA	RV	LGG	TCGA-DH-5144-01A	PTPRZ1	chr7	121684622	+	FYN	chr6	112062296	-
5UTR-5UTR	ENST00000272203	ENST00000367176		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000272203	ENST00000367177		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000272203	ENST00000496057		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000272203	ENST00000367175		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000414478	ENST00000367176		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000414478	ENST00000367177		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000414478	ENST00000496057		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
5UTR-5UTR	ENST00000414478	ENST00000367175		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000485632	ENST00000367176		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000485632	ENST00000367177		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000485632	ENST00000496057		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000485632	ENST00000367175		TCGA	RV	LGG	TCGA-FG-A4MW-01A	PLEKHA6	chr1	204328822	-	LRRN2	chr1	204589346	-
Frame-shit	ENST00000354105	ENST00000369209		TCGA	RV	LGG	TCGA-TM-A84J-01A	CWF19L1	chr10	102027328	-	HSPA12A	chr10	118466796	-
intron-3CDS	ENST00000478047	ENST00000369209		TCGA	RV	LGG	TCGA-TM-A84J-01A	CWF19L1	chr10	102027328	-	HSPA12A	chr10	118466796	-
intron-3CDS	ENST00000370379	ENST00000369209		TCGA	RV	LGG	TCGA-TM-A84J-01A	CWF19L1	chr10	102027328	-	HSPA12A	chr10	118466796	-
Frame-shit	ENST00000361368	ENST00000312891		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
Frame-shit	ENST00000361125	ENST00000312891		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
intron-3CDS	ENST00000480055	ENST00000312891		TCGA	RV	LGG	TCGA-FG-5963-02A	SMURF1	chr7	98741349	-	GJC3	chr7	99521226	-
Frame-shit	ENST00000508803	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000508803	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382892	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382892	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382891	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382891	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382895	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000382895	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000482415	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000482415	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000382888	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000382888	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000514045	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000514045	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000436793	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000436793	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000420906	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000420906	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000503128	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000503128	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000398261	ENST00000304062		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
Frame-shit	ENST00000398261	ENST00000505203		TCGA	RV	LGG	TCGA-DH-A669-01A	WHSC1	chr4	1920350	+	CPLX1	chr4	786396	-
intron-3CDS	ENST00000267485	ENST00000354386		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000267485	ENST00000556134		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000267485	ENST00000423743		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000267485	ENST00000261244		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3UTR	ENST00000267485	ENST00000538571		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000334342	ENST00000354386		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000334342	ENST00000556134		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000334342	ENST00000423743		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3CDS	ENST00000334342	ENST00000261244		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
intron-3UTR	ENST00000334342	ENST00000538571		TCGA	RV	LGG	TCGA-DU-7006-01A	C14orf37	chr14	58764673	-	KIAA0586	chr14	58975273	+
5UTR-3CDS	ENST00000306006	ENST00000370345		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000306006	ENST00000494350		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000306006	ENST00000451524		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000306006	ENST00000535773		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000306006	ENST00000370329		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-3CDS	ENST00000374446	ENST00000370345		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000374446	ENST00000494350		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000374446	ENST00000451524		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000374446	ENST00000535773		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000374446	ENST00000370329		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-3CDS	ENST00000426961	ENST00000370345		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000426961	ENST00000494350		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000426961	ENST00000451524		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000426961	ENST00000535773		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
5UTR-intron	ENST00000426961	ENST00000370329		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-3CDS	ENST00000535642	ENST00000370345		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000535642	ENST00000494350		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000535642	ENST00000451524		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000535642	ENST00000535773		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000535642	ENST00000370329		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-3CDS	ENST00000491188	ENST00000370345		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000491188	ENST00000494350		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000491188	ENST00000451524		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000491188	ENST00000535773		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000491188	ENST00000370329		TCGA	RV	LGG	TCGA-TM-A84J-01A	ZNF239	chr10	44063347	-	SEC31B	chr10	102257037	-
intron-intron	ENST00000403829	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000403829	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000403829	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000403829	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298687	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298687	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298687	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298687	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000350792	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000350792	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000350792	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000350792	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397858	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397858	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397858	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397858	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554104	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554104	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554104	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554104	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000555158	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000555158	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000555158	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000555158	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000553503	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000553503	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000553503	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000553503	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397853	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397853	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397853	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397853	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000360463	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000360463	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000360463	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000360463	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000556147	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000556147	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000556147	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000556147	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397856	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397856	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397856	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397856	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397855	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397855	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397855	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397855	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554143	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554143	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554143	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000554143	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397851	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397851	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397851	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397851	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397847	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397847	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397847	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000397847	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298684	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298684	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298684	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000298684	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397844	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397844	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397844	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000397844	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000554277	ENST00000378746		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000554277	ENST00000378735		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000554277	ENST00000403231		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000554277	ENST00000487055		TCGA	RV	LGG	TCGA-FG-8185-01A	NDRG2	chr14	21484932	-	KIF3A	chr5	132035266	-
In-frame	ENST00000543727	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000543727	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
In-frame	ENST00000550559	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000550559	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
In-frame	ENST00000548851	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000548851	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
In-frame	ENST00000454289	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000454289	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
In-frame	ENST00000540550	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000540550	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
In-frame	ENST00000323833	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000323833	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
In-frame	ENST00000350762	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000350762	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
3UTR-3CDS	ENST00000497617	ENST00000228606		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
3UTR-5UTR	ENST00000497617	ENST00000546496		TCGA	RV	LGG	TCGA-E1-A7YD-01A	TSFM	chr12	58180945	+	CYP27B1	chr12	58159980	-
5CDS-5UTR	ENST00000294016	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	TEAD4	chr12	3103904	+
5CDS-5UTR	ENST00000294016	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	TEAD4	chr12	3103904	+
5CDS-intron	ENST00000294016	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000571889	ENST00000358409		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	TEAD4	chr12	3103904	+
intron-5UTR	ENST00000571889	ENST00000359864		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	TEAD4	chr12	3103904	+
intron-intron	ENST00000571889	ENST00000397122		TCGA	RV	LGG	TCGA-TM-A84I-01A	ADCY9	chr16	4163751	-	TEAD4	chr12	3103904	+
5CDS-intron	ENST00000545387	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000545387	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000545387	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000545387	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-intron	ENST00000402551	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-intron	ENST00000402551	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-intron	ENST00000402551	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000402551	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000316273	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000316273	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000316273	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000316273	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-intron	ENST00000597011	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-intron	ENST00000597011	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-intron	ENST00000597011	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
intron-5UTR	ENST00000597011	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000599246	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000599246	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000599246	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000599246	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000598162	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000598162	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-intron	ENST00000598162	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000598162	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-intron	ENST00000601496	ENST00000599680		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-intron	ENST00000601496	ENST00000309877		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-intron	ENST00000601496	ENST00000600911		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000596822		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000601291		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000377139		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000597198		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000593922		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000600022		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000599223		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000596765		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000599144		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000598808		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000377135		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-5UTR	ENST00000601496	ENST00000442265		TCGA	RV	LGG	TCGA-DU-7010-01A	BCAT2	chr19	49314241	-	IRF3	chr19	50166515	-
5UTR-3CDS	ENST00000589046	ENST00000221797		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	LGALS13	chr19	40095818	+
5UTR-3CDS	ENST00000420450	ENST00000221797		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	LGALS13	chr19	40095818	+
5UTR-3CDS	ENST00000526123	ENST00000221797		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	LGALS13	chr19	40095818	+
3UTR-3CDS	ENST00000432005	ENST00000221797		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	LGALS13	chr19	40095818	+
5UTR-3CDS	ENST00000529555	ENST00000221797		TCGA	RV	LGG	TCGA-TM-A84B-01A	ZNF345	chr19	37342806	+	LGALS13	chr19	40095818	+
intron-3CDS	ENST00000545217	ENST00000228606		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
intron-intron	ENST00000545217	ENST00000546496		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
Frame-shit	ENST00000262259	ENST00000228606		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
5CDS-intron	ENST00000262259	ENST00000546496		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
intron-3CDS	ENST00000596504	ENST00000228606		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
intron-intron	ENST00000596504	ENST00000546496		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
Frame-shit	ENST00000436511	ENST00000228606		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
5CDS-intron	ENST00000436511	ENST00000546496		TCGA	RV	LGG	TCGA-DU-7010-01A	ZNF175	chr19	52085135	+	CYP27B1	chr12	58158333	-
intron-3CDS	ENST00000409262	ENST00000264093		TCGA	RV	LGG	TCGA-S9-A6WL-01A	TET3	chr2	74230293	+	DGUOK	chr2	74173846	+
intron-3CDS	ENST00000409262	ENST00000348222		TCGA	RV	LGG	TCGA-S9-A6WL-01A	TET3	chr2	74230293	+	DGUOK	chr2	74173846	+
intron-3UTR	ENST00000409262	ENST00000462685		TCGA	RV	LGG	TCGA-S9-A6WL-01A	TET3	chr2	74230293	+	DGUOK	chr2	74173846	+
intron-3UTR	ENST00000409262	ENST00000356837		TCGA	RV	LGG	TCGA-S9-A6WL-01A	TET3	chr2	74230293	+	DGUOK	chr2	74173846	+
Frame-shit	ENST00000396884	ENST00000064778		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
5CDS-intron	ENST00000396884	ENST00000450446		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
5CDS-intron	ENST00000396884	ENST00000356467		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
Frame-shit	ENST00000360880	ENST00000064778		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
5CDS-intron	ENST00000360880	ENST00000450446		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
5CDS-intron	ENST00000360880	ENST00000356467		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
intron-3CDS	ENST00000470555	ENST00000064778		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
intron-intron	ENST00000470555	ENST00000450446		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
intron-intron	ENST00000470555	ENST00000356467		TCGA	RV	LGG	TCGA-DH-5140-01A	SOX10	chr22	38373874	-	FAM168A	chr11	73122581	-
Frame-shit	ENST00000308580	ENST00000313288		TCGA	RV	LGG	TCGA-TM-A84B-01A	TMOD3	chr15	52161570	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000544199	ENST00000313288		TCGA	RV	LGG	TCGA-TM-A84B-01A	TMOD3	chr15	52161570	+	TACC3	chr4	1746245	+
intron-3CDS	ENST00000561136	ENST00000313288		TCGA	RV	LGG	TCGA-TM-A84B-01A	TMOD3	chr15	52161570	+	TACC3	chr4	1746245	+
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	LGG	TCGA-HW-7487-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
In-frame	ENST00000248594	ENST00000447467		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
In-frame	ENST00000248594	ENST00000324972		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
In-frame	ENST00000248594	ENST00000537881		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
In-frame	ENST00000248594	ENST00000437599		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
In-frame	ENST00000248594	ENST00000359388		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
5CDS-intron	ENST00000248594	ENST00000413338		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
5CDS-intron	ENST00000248594	ENST00000457059		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
5CDS-intron	ENST00000248594	ENST00000497626		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000415482	ENST00000447467		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000415482	ENST00000324972		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000415482	ENST00000537881		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000415482	ENST00000437599		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000415482	ENST00000359388		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-intron	ENST00000415482	ENST00000413338		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-intron	ENST00000415482	ENST00000457059		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-intron	ENST00000415482	ENST00000497626		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000435495	ENST00000447467		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000435495	ENST00000324972		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000435495	ENST00000537881		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000435495	ENST00000437599		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-3CDS	ENST00000435495	ENST00000359388		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-intron	ENST00000435495	ENST00000413338		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-intron	ENST00000435495	ENST00000457059		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
intron-intron	ENST00000435495	ENST00000497626		TCGA	RV	LGG	TCGA-DU-5855-01A	PTPN12	chr7	77166962	+	DYNC1I1	chr7	95705369	+
5CDS-intron	ENST00000331163	ENST00000537045		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000331163	ENST00000263196		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000331163	ENST00000545799		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000331163	ENST00000473832		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000381551	ENST00000537045		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000381551	ENST00000263196		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000381551	ENST00000545799		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
5CDS-intron	ENST00000381551	ENST00000473832		TCGA	RV	LGG	TCGA-TM-A84J-01A	PDGFB	chr22	39626089	-	DGCR2	chr22	19077003	-
Frame-shit	ENST00000441222	ENST00000257290		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
5CDS-intron	ENST00000441222	ENST00000508170		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
Frame-shit	ENST00000451218	ENST00000257290		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
5CDS-intron	ENST00000451218	ENST00000508170		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
intron-3CDS	ENST00000508499	ENST00000257290		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
intron-intron	ENST00000508499	ENST00000508170		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
intron-3CDS	ENST00000504078	ENST00000257290		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
intron-intron	ENST00000504078	ENST00000508170		TCGA	RV	LGG	TCGA-CS-6665-01A	USP46	chr4	53525282	-	PDGFRA	chr4	55140698	+
In-frame	ENST00000261349	ENST00000305108		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
In-frame	ENST00000261349	ENST00000397265		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000261349	ENST00000542920		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000261349	ENST00000433832		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000261349	ENST00000537416		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
In-frame	ENST00000543091	ENST00000305108		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
In-frame	ENST00000543091	ENST00000397265		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000543091	ENST00000542920		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000543091	ENST00000433832		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000543091	ENST00000537416		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540415	ENST00000305108		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540415	ENST00000397265		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540415	ENST00000542920		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540415	ENST00000433832		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
intron-intron	ENST00000540415	ENST00000537416		TCGA	RV	LGG	TCGA-E1-5304-01A	LRP6	chr12	12332744	-	NINJ2	chr12	675344	-
In-frame	ENST00000291598	ENST00000308964		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000291598	ENST00000586790		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000291598	ENST00000591578		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000291598	ENST00000588740		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000291598	ENST00000591241		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000333201	ENST00000308964		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000333201	ENST00000586790		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000333201	ENST00000591578		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000333201	ENST00000588740		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
In-frame	ENST00000333201	ENST00000591241		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
intron-3CDS	ENST00000585612	ENST00000308964		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
intron-3CDS	ENST00000585612	ENST00000586790		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
intron-3CDS	ENST00000585612	ENST00000591578		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
intron-3CDS	ENST00000585612	ENST00000588740		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
intron-3CDS	ENST00000585612	ENST00000591241		TCGA	RV	LGG	TCGA-E1-A7YL-01A	ZNF583	chr19	56925809	+	CCDC106	chr19	56162649	+
5UTR-3CDS	ENST00000338586	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338586	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338586	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338586	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338586	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000338586	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338515	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338515	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338515	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338515	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000338515	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367171	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367171	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367171	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367171	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367171	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367169	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367169	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367169	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367169	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367169	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000539706	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000539706	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000539706	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000539706	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000539706	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000339876	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000339876	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000339876	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000339876	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000339876	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367170	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367170	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367170	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367170	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367170	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000360049	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000360049	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000360049	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000360049	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000360049	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367172	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367172	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367172	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367172	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000367172	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000403080	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000403080	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000403080	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000403080	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000403080	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404076	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404076	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404076	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404076	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404076	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000401399	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000401399	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000401399	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000401399	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000401399	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404907	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404907	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404907	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404907	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000404907	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000513543	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000513543	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000513543	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000513543	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000513543	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000495396	ENST00000357681		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000495396	ENST00000391954		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000495396	ENST00000367218		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000495396	ENST00000367219		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-3CDS	ENST00000495396	ENST00000341360		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000466407		TCGA	RV	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B4	chr1	203667285	+
5UTR-3CDS	ENST00000304166	ENST00000434909		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000304166	ENST00000509504		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000304166	ENST00000311813		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000304166	ENST00000482461		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000304166	ENST00000441328		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000304166	ENST00000409899		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000304166	ENST00000409611		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000409363	ENST00000434909		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000409363	ENST00000509504		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3CDS	ENST00000409363	ENST00000311813		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000409363	ENST00000482461		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000409363	ENST00000441328		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000409363	ENST00000409899		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5UTR-3UTR	ENST00000409363	ENST00000409611		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3CDS	ENST00000396211	ENST00000434909		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3CDS	ENST00000396211	ENST00000509504		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3CDS	ENST00000396211	ENST00000311813		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000396211	ENST00000482461		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000396211	ENST00000441328		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000396211	ENST00000409899		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000396211	ENST00000409611		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3CDS	ENST00000409489	ENST00000434909		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3CDS	ENST00000409489	ENST00000509504		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3CDS	ENST00000409489	ENST00000311813		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000409489	ENST00000482461		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000409489	ENST00000441328		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000409489	ENST00000409899		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
intron-3UTR	ENST00000409489	ENST00000409611		TCGA	RV	LGG	TCGA-TM-A84B-01A	ADCYAP1R1	chr7	31092293	+	AQP1	chr7	30961681	+
5CDS-5UTR	ENST00000393386	ENST00000397752		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393386	ENST00000318493		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000436117		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000495962		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000539704		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000397752		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000318493		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000436117		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000495962		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000539704		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000397752		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000318493		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000436117		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000495962		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000539704		TCGA	RV	LGG	TCGA-DU-6407-02B	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000405201	ENST00000528712		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000405201	ENST00000335135		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000405201	ENST00000532059		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000404621	ENST00000528712		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000404621	ENST00000335135		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000404621	ENST00000532059		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000404121	ENST00000528712		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000404121	ENST00000335135		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000404121	ENST00000532059		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000356219	ENST00000528712		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000356219	ENST00000335135		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000356219	ENST00000532059		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000397355	ENST00000528712		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000397355	ENST00000335135		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000397355	ENST00000532059		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000429285	ENST00000528712		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000429285	ENST00000335135		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000429285	ENST00000532059		TCGA	RV	LGG	TCGA-HT-7854-01A	NCOR2	chr12	124862783	-	GATA4	chr8	11606428	+
intron-3CDS	ENST00000413953	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-intron	ENST00000413953	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
5UTR-3CDS	ENST00000347140	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
5UTR-intron	ENST00000347140	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000358907	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-intron	ENST00000358907	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
5UTR-3CDS	ENST00000402412	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
5UTR-intron	ENST00000402412	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000441731	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-intron	ENST00000441731	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000403821	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-intron	ENST00000403821	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000546843	ENST00000455537		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
intron-intron	ENST00000546843	ENST00000286452		TCGA	RV	LGG	TCGA-TM-A84B-01A	R3HDM2	chr12	57789532	-	KIF5A	chr12	57957222	+
In-frame	ENST00000370355	ENST00000379051		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
In-frame	ENST00000370355	ENST00000379033		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
In-frame	ENST00000370355	ENST00000298428		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
5CDS-3UTR	ENST00000370355	ENST00000495368		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
5CDS-3UTR	ENST00000370355	ENST00000304267		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
5CDS-3UTR	ENST00000370355	ENST00000379020		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
5CDS-3UTR	ENST00000370355	ENST00000379017		TCGA	RV	LGG	TCGA-TM-A84J-01A	SCD	chr10	102116521	+	SEC61A2	chr10	12191594	+
Frame-shit	ENST00000481110	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
5CDS-intron	ENST00000481110	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
In-frame	ENST00000440486	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
5CDS-intron	ENST00000440486	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
In-frame	ENST00000412135	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
5CDS-intron	ENST00000412135	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
In-frame	ENST00000340107	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
5CDS-intron	ENST00000340107	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
In-frame	ENST00000260795	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
5CDS-intron	ENST00000260795	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
In-frame	ENST00000352904	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
5CDS-intron	ENST00000352904	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
intron-3CDS	ENST00000474521	ENST00000366862		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
intron-intron	ENST00000474521	ENST00000424254		TCGA	RV	LGG	TCGA-TM-A84B-01A	FGFR3	chr4	1808661	+	FBXO28	chr1	224340844	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LGG	TCGA-P5-A72U-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1732899	+
Frame-shit	ENST00000435070	ENST00000451516		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000435070	ENST00000334414		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000435070	ENST00000550358		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000435070	ENST00000538708		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000435070	ENST00000550857		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000435070	ENST00000261266		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000435070	ENST00000551525		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
5CDS-intron	ENST00000435070	ENST00000538174		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000451516		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000334414		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000550358		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000538708		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000550857		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000261266		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000456847	ENST00000551525		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
5CDS-intron	ENST00000456847	ENST00000538174		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000451516		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000334414		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000550358		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000538708		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000550857		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000261266		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000266679	ENST00000551525		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
5CDS-intron	ENST00000266679	ENST00000538174		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000451516		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000334414		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000550358		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000538708		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000550857		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000261266		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-3CDS	ENST00000550987	ENST00000551525		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
3UTR-intron	ENST00000550987	ENST00000538174		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000451516		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000334414		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000550358		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000538708		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000550857		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000261266		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000551516	ENST00000551525		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
5CDS-intron	ENST00000551516	ENST00000538174		TCGA	RV	LGG	TCGA-CS-4941-01A	CPSF6	chr12	69633486	+	PTPRB	chr12	70975082	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LGG	TCGA-FG-7643-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000218200	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000218200	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000218200	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000218200	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000218200	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370471	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370471	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370471	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370471	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000370471	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370477	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370477	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370477	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370477	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000370477	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000334557	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000334557	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000334557	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000334557	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000334557	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000439526	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000439526	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000439526	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000439526	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000439526	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370475	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370475	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370475	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370475	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000370475	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370470	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370470	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370470	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
In-frame	ENST00000370470	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
5CDS-intron	ENST00000370470	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000440235	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000440235	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000440235	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000440235	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-intron	ENST00000440235	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000492846	ENST00000370460		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000492846	ENST00000370457		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000492846	ENST00000342251		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-3CDS	ENST00000492846	ENST00000370458		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-intron	ENST00000492846	ENST00000286437		TCGA	LD	LGG	TCGA-CS-4942-01A	FMR1	chrX	147003503	+	AFF2	chrX	147733520	+
intron-5UTR	ENST00000446828	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000446828	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000446828	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000424227	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000424227	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000424227	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000443863	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000443863	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000443863	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000535426	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000535426	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000535426	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
5UTR-5UTR	ENST00000265026	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
5UTR-intron	ENST00000265026	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
5UTR-5UTR	ENST00000265026	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000448876	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000448876	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000448876	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000454237	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000454237	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000454237	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000438798	ENST00000340524		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-intron	ENST00000438798	ENST00000427544		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
intron-5UTR	ENST00000438798	ENST00000490825		TCGA	LD	LGG	TCGA-CS-4942-01A	MAP3K13	chr3	185081156	+	UTS2B	chr3	191046498	-
5CDS-intron	ENST00000377275	ENST00000319445		TCGA	LD	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66383765	+
5CDS-intron	ENST00000377275	ENST00000360242		TCGA	LD	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66383765	+
5CDS-intron	ENST00000377275	ENST00000584156		TCGA	LD	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66383765	+
5CDS-intron	ENST00000377275	ENST00000358653		TCGA	LD	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66383765	+
5CDS-intron	ENST00000377275	ENST00000577772		TCGA	LD	LGG	TCGA-CS-4943-01A	ARL5B	chr10	18948612	+	CCDC102B	chr18	66383765	+
5CDS-5UTR	ENST00000306627	ENST00000494118		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000306627	ENST00000281523		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000346855	ENST00000494118		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000346855	ENST00000281523		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000467766	ENST00000494118		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000467766	ENST00000281523		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000424381	ENST00000494118		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000424381	ENST00000281523		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000475680	ENST00000494118		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000475680	ENST00000281523		TCGA	LD	LGG	TCGA-CS-4943-01A	UBE2E1	chr3	23848912	+	ZNF385D	chr3	21478695	-
5UTR-3CDS	ENST00000485702	ENST00000262895		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
5UTR-3CDS	ENST00000485702	ENST00000593562		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
5UTR-3CDS	ENST00000485702	ENST00000301218		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000412216	ENST00000262895		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000412216	ENST00000593562		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000412216	ENST00000301218		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000301399	ENST00000262895		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000301399	ENST00000593562		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000301399	ENST00000301218		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000420592	ENST00000262895		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000420592	ENST00000593562		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
Frame-shit	ENST00000420592	ENST00000301218		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
In-frame	ENST00000451628	ENST00000262895		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
In-frame	ENST00000451628	ENST00000593562		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
In-frame	ENST00000451628	ENST00000301218		TCGA	LD	LGG	TCGA-CS-4943-01A	ZNF577	chr19	52380535	-	GRIK5	chr19	42510962	-
In-frame	ENST00000224167	ENST00000316403		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
Frame-shit	ENST00000224167	ENST00000546343		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
Frame-shit	ENST00000224167	ENST00000560366		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
In-frame	ENST00000224167	ENST00000405140		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
Frame-shit	ENST00000224167	ENST00000523500		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
In-frame	ENST00000371625	ENST00000316403		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
Frame-shit	ENST00000371625	ENST00000546343		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
Frame-shit	ENST00000371625	ENST00000560366		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
In-frame	ENST00000371625	ENST00000405140		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
Frame-shit	ENST00000371625	ENST00000523500		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
intron-3CDS	ENST00000460340	ENST00000316403		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
intron-3CDS	ENST00000460340	ENST00000546343		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
intron-3CDS	ENST00000460340	ENST00000560366		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
intron-3CDS	ENST00000460340	ENST00000405140		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
intron-3CDS	ENST00000460340	ENST00000523500		TCGA	LD	LGG	TCGA-CS-4944-01A	PTGDS	chr9	139872144	+	CLU	chr8	27455767	-
5CDS-intron	ENST00000279146	ENST00000293274		TCGA	LD	LGG	TCGA-CS-5397-01A	AIP	chr11	67250728	+	LYZL6	chr17	34266562	-
5CDS-intron	ENST00000279146	ENST00000394523		TCGA	LD	LGG	TCGA-CS-5397-01A	AIP	chr11	67250728	+	LYZL6	chr17	34266562	-
5CDS-5UTR	ENST00000279146	ENST00000585556		TCGA	LD	LGG	TCGA-CS-5397-01A	AIP	chr11	67250728	+	LYZL6	chr17	34266562	-
5CDS-intron	ENST00000279146	ENST00000492340		TCGA	LD	LGG	TCGA-CS-5397-01A	AIP	chr11	67250728	+	LYZL6	chr17	34266562	-
intron-3CDS	ENST00000379081	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379081	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379081	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379081	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379081	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-intron	ENST00000379081	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-intron	ENST00000379081	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379087	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379087	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379087	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379087	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379087	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379087	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379087	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379080	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379080	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379080	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379080	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-3CDS	ENST00000379080	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-intron	ENST00000379080	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
intron-intron	ENST00000379080	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379084	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379084	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379084	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379084	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379084	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379084	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379084	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379089	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379089	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379089	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379089	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379089	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379089	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379089	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000445726	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000445726	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000445726	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000445726	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000445726	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000445726	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000445726	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000297620	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000297620	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000297620	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000297620	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000297620	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000297620	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000297620	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379078	ENST00000571589		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379078	ENST00000574045		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379078	ENST00000318282		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379078	ENST00000572567		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
Frame-shit	ENST00000379078	ENST00000341243		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379078	ENST00000575537		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
5CDS-intron	ENST00000379078	ENST00000573051		TCGA	LD	LGG	TCGA-CS-5397-01A	FAM219A	chr9	34458202	-	MKL2	chr16	14304100	+
In-frame	ENST00000424107	ENST00000311925		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
5CDS-intron	ENST00000424107	ENST00000485502		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
5CDS-intron	ENST00000424107	ENST00000378800		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
In-frame	ENST00000558583	ENST00000311925		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
5CDS-intron	ENST00000558583	ENST00000485502		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
5CDS-intron	ENST00000558583	ENST00000378800		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-3CDS	ENST00000558318	ENST00000311925		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-intron	ENST00000558318	ENST00000485502		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-intron	ENST00000558318	ENST00000378800		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-3CDS	ENST00000423335	ENST00000311925		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-intron	ENST00000423335	ENST00000485502		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-intron	ENST00000423335	ENST00000378800		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-3CDS	ENST00000482916	ENST00000311925		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-intron	ENST00000482916	ENST00000485502		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
intron-intron	ENST00000482916	ENST00000378800		TCGA	LD	LGG	TCGA-CS-5397-01A	SHISA9	chr16	13297406	+	CCL19	chr9	34690339	-
Frame-shit	ENST00000372727	ENST00000588240		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000372727	ENST00000592237		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000372727	ENST00000311979		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000414310	ENST00000588240		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000414310	ENST00000592237		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000414310	ENST00000311979		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000243918	ENST00000588240		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000243918	ENST00000592237		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000243918	ENST00000311979		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000426004	ENST00000588240		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000426004	ENST00000592237		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
Frame-shit	ENST00000426004	ENST00000311979		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
intron-3CDS	ENST00000479779	ENST00000588240		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
intron-3CDS	ENST00000479779	ENST00000592237		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
intron-3CDS	ENST00000479779	ENST00000311979		TCGA	LD	LGG	TCGA-CS-5397-01A	SYS1	chr20	43992333	+	TAF15	chr17	34169371	+
5CDS-intron	ENST00000216185	ENST00000355078		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000216185	ENST00000302763		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000216185	ENST00000518825		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000216185	ENST00000520400		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000216185	ENST00000540387		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000416967	ENST00000355078		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000416967	ENST00000302763		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000416967	ENST00000518825		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000416967	ENST00000520400		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000416967	ENST00000540387		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000487725	ENST00000355078		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000487725	ENST00000302763		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000487725	ENST00000518825		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000487725	ENST00000520400		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5UTR-intron	ENST00000487725	ENST00000540387		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000403313	ENST00000355078		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000403313	ENST00000302763		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000403313	ENST00000518825		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000403313	ENST00000520400		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
5CDS-intron	ENST00000403313	ENST00000540387		TCGA	LD	LGG	TCGA-CS-5397-01A	TXN2	chr22	36876622	-	CTNNA1	chr5	138059156	+
Frame-shit	ENST00000261708	ENST00000217074		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
In-frame	ENST00000261708	ENST00000255136		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
Frame-shit	ENST00000261708	ENST00000537323		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
In-frame	ENST00000261708	ENST00000217073		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
5CDS-3UTR	ENST00000261708	ENST00000490798		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
5CDS-intron	ENST00000261708	ENST00000372824		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
5CDS-intron	ENST00000261708	ENST00000372819		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
5CDS-intron	ENST00000261708	ENST00000217075		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-3CDS	ENST00000490218	ENST00000217074		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-3CDS	ENST00000490218	ENST00000255136		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-3CDS	ENST00000490218	ENST00000537323		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-3CDS	ENST00000490218	ENST00000217073		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-3UTR	ENST00000490218	ENST00000490798		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-intron	ENST00000490218	ENST00000372824		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-intron	ENST00000490218	ENST00000372819		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-intron	ENST00000490218	ENST00000217075		TCGA	LD	LGG	TCGA-CS-5397-01A	UTP6	chr17	30205269	-	PABPC1L	chr20	43559159	+
intron-3CDS	ENST00000553277	ENST00000329117		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-intron	ENST00000553277	ENST00000361588		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
In-frame	ENST00000243077	ENST00000329117		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
5CDS-intron	ENST00000243077	ENST00000361588		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-3CDS	ENST00000338962	ENST00000329117		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-intron	ENST00000338962	ENST00000361588		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-3CDS	ENST00000554174	ENST00000329117		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-intron	ENST00000554174	ENST00000361588		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-3CDS	ENST00000553446	ENST00000329117		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
intron-intron	ENST00000553446	ENST00000361588		TCGA	LD	LGG	TCGA-CS-6186-01A	LRP1	chr12	57596320	+	BCAN	chr1	156627467	+
In-frame	ENST00000268099	ENST00000309007		TCGA	LD	LGG	TCGA-CS-6186-01A	SCAMP2	chr15	75165540	-	DBN1	chr5	176887704	-
In-frame	ENST00000268099	ENST00000292385		TCGA	LD	LGG	TCGA-CS-6186-01A	SCAMP2	chr15	75165540	-	DBN1	chr5	176887704	-
In-frame	ENST00000268099	ENST00000393565		TCGA	LD	LGG	TCGA-CS-6186-01A	SCAMP2	chr15	75165540	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000268099	ENST00000393563		TCGA	LD	LGG	TCGA-CS-6186-01A	SCAMP2	chr15	75165540	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000268099	ENST00000512501		TCGA	LD	LGG	TCGA-CS-6186-01A	SCAMP2	chr15	75165540	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000406451	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000406451	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000401921	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000401921	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000432645	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000432645	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000441542	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000441542	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
5UTR-3CDS	ENST00000417496	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
5UTR-3UTR	ENST00000417496	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000476135	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000476135	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000405010	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000405010	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000428307	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000428307	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000406072	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000406072	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000456174	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000456174	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3CDS	ENST00000524023	ENST00000220763		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
intron-3UTR	ENST00000524023	ENST00000529551		TCGA	LD	LGG	TCGA-CS-6188-01A	HDAC9	chr7	18126836	+	CPQ	chr8	98078237	+
5CDS-5UTR	ENST00000296215	ENST00000490034		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5CDS-5UTR	ENST00000296215	ENST00000375044		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5CDS-5UTR	ENST00000296215	ENST00000400463		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5CDS-5UTR	ENST00000296215	ENST00000247986		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5UTR-5UTR	ENST00000468040	ENST00000490034		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5UTR-5UTR	ENST00000468040	ENST00000375044		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5UTR-5UTR	ENST00000468040	ENST00000400463		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5UTR-5UTR	ENST00000468040	ENST00000247986		TCGA	LD	LGG	TCGA-CS-6188-01A	SNIP1	chr1	38018246	-	KIF17	chr1	20992824	-
5CDS-3UTR	ENST00000306888	ENST00000411630		TCGA	LD	LGG	TCGA-CS-6665-01A	LNX1	chr4	54424041	-	DANCR	chr4	53578991	+
intron-3UTR	ENST00000263925	ENST00000411630		TCGA	LD	LGG	TCGA-CS-6665-01A	LNX1	chr4	54424041	-	DANCR	chr4	53578991	+
intron-3UTR	ENST00000504605	ENST00000411630		TCGA	LD	LGG	TCGA-CS-6665-01A	LNX1	chr4	54424041	-	DANCR	chr4	53578991	+
In-frame	ENST00000506198	ENST00000257290		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5CDS-intron	ENST00000506198	ENST00000508170		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
In-frame	ENST00000381334	ENST00000257290		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5CDS-intron	ENST00000381334	ENST00000508170		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5UTR-3CDS	ENST00000542052	ENST00000257290		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5UTR-intron	ENST00000542052	ENST00000508170		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
intron-3CDS	ENST00000514904	ENST00000257290		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
intron-intron	ENST00000514904	ENST00000508170		TCGA	LD	LGG	TCGA-CS-6665-01A	TMEM165	chr4	56262563	+	PDGFRA	chr4	55133456	+
5CDS-5UTR	ENST00000345617	ENST00000340611		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
5CDS-intron	ENST00000345617	ENST00000473879		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
5CDS-5UTR	ENST00000543185	ENST00000340611		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
5CDS-intron	ENST00000543185	ENST00000473879		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
intron-5UTR	ENST00000541256	ENST00000340611		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
intron-intron	ENST00000541256	ENST00000473879		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
intron-5UTR	ENST00000553145	ENST00000340611		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
intron-intron	ENST00000553145	ENST00000473879		TCGA	LD	LGG	TCGA-CS-6666-01A	HDAC4	chr2	240002791	-	BRAT1	chr7	2594081	-
In-frame	ENST00000262962	ENST00000262948		TCGA	LD	LGG	TCGA-DB-5270-01A	CCDC94	chr19	4254486	+	MAP2K2	chr19	4110653	-
In-frame	ENST00000262962	ENST00000394867		TCGA	LD	LGG	TCGA-DB-5270-01A	CCDC94	chr19	4254486	+	MAP2K2	chr19	4110653	-
5CDS-5UTR	ENST00000262962	ENST00000599345		TCGA	LD	LGG	TCGA-DB-5270-01A	CCDC94	chr19	4254486	+	MAP2K2	chr19	4110653	-
Frame-shit	ENST00000327835	ENST00000519824		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
Frame-shit	ENST00000327835	ENST00000522746		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
In-frame	ENST00000327835	ENST00000523509		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
Frame-shit	ENST00000327835	ENST00000401979		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
In-frame	ENST00000327835	ENST00000519110		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
Frame-shit	ENST00000327835	ENST00000522250		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
Frame-shit	ENST00000327835	ENST00000517654		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
In-frame	ENST00000327835	ENST00000519540		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
In-frame	ENST00000327835	ENST00000522941		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
5CDS-intron	ENST00000327835	ENST00000518879		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000519824		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000522746		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000523509		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000401979		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000519110		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000522250		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000517654		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000519540		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-3CDS	ENST00000520336	ENST00000522941		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
intron-intron	ENST00000520336	ENST00000518879		TCGA	LD	LGG	TCGA-DB-5270-01A	ZNF704	chr8	81733609	-	FAM49B	chr8	130854451	-
In-frame	ENST00000595437	ENST00000393196		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000595437	ENST00000336097		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000595437	ENST00000480143		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000595437	ENST00000511355		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000595437	ENST00000013034		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376586	ENST00000393196		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376586	ENST00000336097		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376586	ENST00000480143		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376586	ENST00000511355		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376586	ENST00000013034		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000319562	ENST00000393196		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000319562	ENST00000336097		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000319562	ENST00000480143		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000319562	ENST00000511355		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000319562	ENST00000013034		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376581	ENST00000393196		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376581	ENST00000336097		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376581	ENST00000480143		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376581	ENST00000511355		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
In-frame	ENST00000376581	ENST00000013034		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000393196		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000336097		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000480143		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000511355		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
intron-3CDS	ENST00000593990	ENST00000013034		TCGA	LD	LGG	TCGA-DB-5275-01A	FARP1	chr13	98865667	+	NME1	chr17	49237341	+
Frame-shit	ENST00000262013	ENST00000376355		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000262013	ENST00000444838		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000262013	ENST00000376360		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000262013	ENST00000376354		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000262013	ENST00000339105		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000505279	ENST00000376355		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000505279	ENST00000444838		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000505279	ENST00000376360		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000505279	ENST00000376354		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000505279	ENST00000339105		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000357122	ENST00000376355		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000357122	ENST00000444838		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000357122	ENST00000376360		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000357122	ENST00000376354		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
Frame-shit	ENST00000357122	ENST00000339105		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000509724	ENST00000376355		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000509724	ENST00000444838		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000509724	ENST00000376360		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000509724	ENST00000376354		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000509724	ENST00000339105		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000510283	ENST00000376355		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000510283	ENST00000444838		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000510283	ENST00000376360		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000510283	ENST00000376354		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000510283	ENST00000339105		TCGA	LD	LGG	TCGA-DB-5275-01A	SPAG9	chr17	49197715	-	CLYBL	chr13	100518494	+
intron-3CDS	ENST00000560302	ENST00000394480		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000557856		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000357724		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000355254		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000360948		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000542733		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000558676		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000560302	ENST00000317501		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000560302	ENST00000558306		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000560302	ENST00000540489		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000394480		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000557856		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000357724		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000355254		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000360948		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000542733		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000558676		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394518	ENST00000317501		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000394518	ENST00000558306		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000394518	ENST00000540489		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000394480		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000557856		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000357724		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000355254		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000360948		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000542733		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000558676		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000361243	ENST00000317501		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000361243	ENST00000558306		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000361243	ENST00000540489		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000394480		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000557856		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000357724		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000355254		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000360948		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000542733		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000558676		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-3CDS	ENST00000560579	ENST00000317501		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-5UTR	ENST00000560579	ENST00000558306		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
3UTR-5UTR	ENST00000560579	ENST00000540489		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000394480		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000557856		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000357724		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000355254		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000360948		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000542733		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000558676		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000394510	ENST00000317501		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000394510	ENST00000558306		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000394510	ENST00000540489		TCGA	LD	LGG	TCGA-DB-5277-01A	AKAP13	chr15	86228104	+	NTRK3	chr15	88576276	-
In-frame	ENST00000359568	ENST00000400274		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000427143		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000318711		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000417564		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000457905		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000466639		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000435722		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-intron	ENST00000359568	ENST00000479654		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-3CDS	ENST00000480896	ENST00000400274		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000427143		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000318711		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000417564		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000457905		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000466639		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000435722		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
3UTR-intron	ENST00000480896	ENST00000479654		TCGA	LD	LGG	TCGA-DB-5277-01A	PCNT	chr21	47787054	+	DIP2A	chr21	47980635	+
5CDS-5UTR	ENST00000538941	ENST00000560079		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
5CDS-intron	ENST00000538941	ENST00000299927		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
5CDS-5UTR	ENST00000563290	ENST00000560079		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
5CDS-intron	ENST00000563290	ENST00000299927		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
5CDS-5UTR	ENST00000324767	ENST00000560079		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
5CDS-intron	ENST00000324767	ENST00000299927		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
intron-5UTR	ENST00000562890	ENST00000560079		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
intron-intron	ENST00000562890	ENST00000299927		TCGA	LD	LGG	TCGA-DB-5277-01A	SCAPER	chr15	76797200	-	ZNF592	chr15	85321414	+
Frame-shit	ENST00000304623	ENST00000280285		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
Frame-shit	ENST00000304623	ENST00000382142		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
Frame-shit	ENST00000304623	ENST00000264934		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5CDS-intron	ENST00000304623	ENST00000510216		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
Frame-shit	ENST00000359640	ENST00000280285		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
Frame-shit	ENST00000359640	ENST00000382142		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
Frame-shit	ENST00000359640	ENST00000264934		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5CDS-intron	ENST00000359640	ENST00000510216		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000511377	ENST00000280285		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000511377	ENST00000382142		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000511377	ENST00000264934		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5CDS-intron	ENST00000511377	ENST00000510216		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000458100	ENST00000280285		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000458100	ENST00000382142		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000458100	ENST00000264934		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5CDS-intron	ENST00000458100	ENST00000510216		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000503622	ENST00000280285		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000503622	ENST00000382142		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
In-frame	ENST00000503622	ENST00000264934		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5CDS-intron	ENST00000503622	ENST00000510216		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5UTR-3CDS	ENST00000495388	ENST00000280285		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5UTR-3CDS	ENST00000495388	ENST00000382142		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5UTR-3CDS	ENST00000495388	ENST00000264934		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5UTR-intron	ENST00000495388	ENST00000510216		TCGA	LD	LGG	TCGA-DB-5281-01A	CTNND2	chr5	11346484	-	MTMR12	chr5	32263348	-
5CDS-intron	ENST00000373542	ENST00000373583		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373573		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373589		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000429103		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373571		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000439122		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373560		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373559		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373561		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000478743		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373556		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373542	ENST00000373554		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373583		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373573		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373589		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000429103		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373571		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000439122		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373560		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373559		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373561		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000478743		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373556		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373545	ENST00000373554		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373583		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373573		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373589		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000429103		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373571		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000439122		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373560		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373559		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373561		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000478743		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373556		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000541944	ENST00000373554		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373583		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373573		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373589		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000429103		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373571		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000439122		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373560		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373559		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373561		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000478743		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373556		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000339490	ENST00000373554		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373583		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373573		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373589		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000429103		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373571		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000439122		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373560		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373559		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373561		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000478743		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373556		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373539	ENST00000373554		TCGA	LD	LGG	TCGA-DB-A4XB-01A	PHKA1	chrX	71915558	-	HDAC8	chrX	71571688	-
intron-3CDS	ENST00000420886	ENST00000280571		TCGA	LD	LGG	TCGA-DB-A4XF-01A	SBNO1	chr12	123849248	-	RILPL2	chr12	123907704	-
intron-3CDS	ENST00000267176	ENST00000280571		TCGA	LD	LGG	TCGA-DB-A4XF-01A	SBNO1	chr12	123849248	-	RILPL2	chr12	123907704	-
5UTR-3CDS	ENST00000602750	ENST00000280571		TCGA	LD	LGG	TCGA-DB-A4XF-01A	SBNO1	chr12	123849248	-	RILPL2	chr12	123907704	-
5UTR-3CDS	ENST00000602398	ENST00000280571		TCGA	LD	LGG	TCGA-DB-A4XF-01A	SBNO1	chr12	123849248	-	RILPL2	chr12	123907704	-
Frame-shit	ENST00000373839	ENST00000373954		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
Frame-shit	ENST00000373839	ENST00000419687		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
Frame-shit	ENST00000373839	ENST00000530324		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
Frame-shit	ENST00000373839	ENST00000234549		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
Frame-shit	ENST00000373839	ENST00000373949		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
Frame-shit	ENST00000373839	ENST00000010299		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
3UTR-3CDS	ENST00000493669	ENST00000373954		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
3UTR-3CDS	ENST00000493669	ENST00000419687		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
3UTR-3CDS	ENST00000493669	ENST00000530324		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
3UTR-3CDS	ENST00000493669	ENST00000234549		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
3UTR-3CDS	ENST00000493669	ENST00000373949		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
3UTR-3CDS	ENST00000493669	ENST00000010299		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
intron-3CDS	ENST00000373836	ENST00000373954		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
intron-3CDS	ENST00000373836	ENST00000419687		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
intron-3CDS	ENST00000373836	ENST00000530324		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
intron-3CDS	ENST00000373836	ENST00000234549		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
intron-3CDS	ENST00000373836	ENST00000373949		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
intron-3CDS	ENST00000373836	ENST00000010299		TCGA	LD	LGG	TCGA-DB-A64P-01A	PHACTR4	chr1	28733974	+	FAM76A	chr1	28081706	+
5CDS-3UTR	ENST00000353139	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000353139	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000360679	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000360679	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000394406	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000394406	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000335166	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000335166	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3UTR	ENST00000416895	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3UTR	ENST00000416895	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000361253	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000361253	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3UTR	ENST00000588142	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3UTR	ENST00000588142	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3UTR	ENST00000589665	ENST00000329244		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3UTR	ENST00000589665	ENST00000527434		TCGA	LD	LGG	TCGA-DB-A64Q-01A	ACACA	chr17	35468466	-	WASIR2	chr16	72958	+
intron-3CDS	ENST00000309964	ENST00000511469		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000309964	ENST00000264218		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000309964	ENST00000505262		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000309964	ENST00000507338		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-5UTR	ENST00000309964	ENST00000515325		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000381322	ENST00000511469		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000381322	ENST00000264218		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000381322	ENST00000505262		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000381322	ENST00000507338		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-5UTR	ENST00000381322	ENST00000515325		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000513440	ENST00000511469		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000513440	ENST00000264218		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000513440	ENST00000505262		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000513440	ENST00000507338		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-5UTR	ENST00000513440	ENST00000515325		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000506923	ENST00000511469		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000506923	ENST00000264218		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000506923	ENST00000505262		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-3CDS	ENST00000506923	ENST00000507338		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
intron-5UTR	ENST00000506923	ENST00000515325		TCGA	LD	LGG	TCGA-DB-A75O-01A	CLOCK	chr4	56412649	-	NMU	chr4	56466742	-
In-frame	ENST00000592782	ENST00000407008		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000592782	ENST00000583517		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000592782	ENST00000582037		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
In-frame	ENST00000258960	ENST00000407008		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000258960	ENST00000583517		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
5CDS-intron	ENST00000258960	ENST00000582037		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
3UTR-3CDS	ENST00000590114	ENST00000407008		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
3UTR-intron	ENST00000590114	ENST00000583517		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
3UTR-intron	ENST00000590114	ENST00000582037		TCGA	LD	LGG	TCGA-DB-A75O-01A	NMT1	chr17	43173653	+	NLK	chr17	26449629	+
5UTR-3CDS	ENST00000468480	ENST00000215794		TCGA	LD	LGG	TCGA-DB-A75O-01A	RNF6	chr13	26792649	-	USP18	chr22	18659538	+
Frame-shit	ENST00000346166	ENST00000215794		TCGA	LD	LGG	TCGA-DB-A75O-01A	RNF6	chr13	26792649	-	USP18	chr22	18659538	+
In-frame	ENST00000381588	ENST00000215794		TCGA	LD	LGG	TCGA-DB-A75O-01A	RNF6	chr13	26792649	-	USP18	chr22	18659538	+
In-frame	ENST00000381570	ENST00000215794		TCGA	LD	LGG	TCGA-DB-A75O-01A	RNF6	chr13	26792649	-	USP18	chr22	18659538	+
5UTR-3CDS	ENST00000399762	ENST00000215794		TCGA	LD	LGG	TCGA-DB-A75O-01A	RNF6	chr13	26792649	-	USP18	chr22	18659538	+
5CDS-5UTR	ENST00000263284	ENST00000308064		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000263284	ENST00000533673		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000595358	ENST00000308064		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000595358	ENST00000533673		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000536603	ENST00000308064		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000536603	ENST00000533673		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-5UTR	ENST00000594087	ENST00000308064		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5CDS-intron	ENST00000594087	ENST00000533673		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
intron-5UTR	ENST00000601763	ENST00000308064		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
intron-intron	ENST00000601763	ENST00000533673		TCGA	LD	LGG	TCGA-DH-5142-01A	CCDC61	chr19	46506759	+	CHST1	chr11	45674156	-
5UTR-3CDS	ENST00000381980	ENST00000515037		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
5UTR-3CDS	ENST00000381980	ENST00000358869		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
5UTR-intron	ENST00000381980	ENST00000513966		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
5UTR-3CDS	ENST00000508175	ENST00000515037		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
5UTR-3CDS	ENST00000508175	ENST00000358869		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
5UTR-intron	ENST00000508175	ENST00000513966		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
intron-3CDS	ENST00000284437	ENST00000515037		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
intron-3CDS	ENST00000284437	ENST00000358869		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
intron-intron	ENST00000284437	ENST00000513966		TCGA	LD	LGG	TCGA-DH-A669-01A	C4orf19	chr4	37455662	+	FAM114A1	chr4	38924391	+
5CDS-intron	ENST00000316519	ENST00000418253		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000316519	ENST00000299308		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000316519	ENST00000535886		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000261686	ENST00000418253		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000261686	ENST00000299308		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000261686	ENST00000535886		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5UTR-intron	ENST00000316543	ENST00000418253		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5UTR-intron	ENST00000316543	ENST00000299308		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
5UTR-intron	ENST00000316543	ENST00000535886		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000545511	ENST00000418253		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000545511	ENST00000299308		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000545511	ENST00000535886		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000543665	ENST00000418253		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000543665	ENST00000299308		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000543665	ENST00000535886		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000398953	ENST00000418253		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000398953	ENST00000299308		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
intron-intron	ENST00000398953	ENST00000535886		TCGA	LD	LGG	TCGA-DH-A66G-01A	AACS	chr12	125603311	+	TMEM132B	chr12	126068397	+
In-frame	ENST00000318607	ENST00000355849		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5CDS-intron	ENST00000318607	ENST00000520981		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5CDS-intron	ENST00000318607	ENST00000522578		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
In-frame	ENST00000519004	ENST00000355849		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5CDS-intron	ENST00000519004	ENST00000520981		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5CDS-intron	ENST00000519004	ENST00000522578		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
In-frame	ENST00000522387	ENST00000355849		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5CDS-intron	ENST00000522387	ENST00000520981		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5CDS-intron	ENST00000522387	ENST00000522578		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5UTR-3CDS	ENST00000519596	ENST00000355849		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000519596	ENST00000520981		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
5UTR-intron	ENST00000519596	ENST00000522578		TCGA	LD	LGG	TCGA-DH-A66G-01A	PABPC1	chr8	101724880	-	KHDRBS3	chr8	136554897	+
Frame-shit	ENST00000389420	ENST00000445832		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
In-frame	ENST00000389420	ENST00000288757		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
Frame-shit	ENST00000389420	ENST00000537817		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
5CDS-intron	ENST00000389420	ENST00000536407		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
5CDS-intron	ENST00000389420	ENST00000366211		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
5CDS-intron	ENST00000389420	ENST00000539736		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-3CDS	ENST00000553158	ENST00000445832		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-3CDS	ENST00000553158	ENST00000288757		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-3CDS	ENST00000553158	ENST00000537817		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-intron	ENST00000553158	ENST00000536407		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-intron	ENST00000553158	ENST00000366211		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-intron	ENST00000553158	ENST00000539736		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-3CDS	ENST00000395541	ENST00000445832		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-3CDS	ENST00000395541	ENST00000288757		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-3CDS	ENST00000395541	ENST00000537817		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-intron	ENST00000395541	ENST00000536407		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-intron	ENST00000395541	ENST00000366211		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
intron-intron	ENST00000395541	ENST00000539736		TCGA	LD	LGG	TCGA-DH-A7UT-01A	ADAMTS20	chr12	43763093	-	C12orf43	chr12	121442295	-
Frame-shit	ENST00000254770	ENST00000285279		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
Frame-shit	ENST00000254770	ENST00000433959		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
Frame-shit	ENST00000254770	ENST00000545390		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000428648		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000428097		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000418904		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000254770	ENST00000454227		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000453256		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000427700		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000254770	ENST00000471168		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000486376	ENST00000285279		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000486376	ENST00000433959		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000486376	ENST00000545390		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000428648		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000428097		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000418904		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-intron	ENST00000486376	ENST00000454227		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000453256		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000427700		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000486376	ENST00000471168		TCGA	LD	LGG	TCGA-DH-A7UV-01A	LANCL2	chr7	55479782	+	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000413465	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-3CDS	ENST00000413465	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-intron	ENST00000413465	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-3CDS	ENST00000359597	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-3CDS	ENST00000359597	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-intron	ENST00000359597	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000269305	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000269305	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-intron	ENST00000269305	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000455263	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000455263	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-intron	ENST00000455263	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000420246	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000420246	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-intron	ENST00000420246	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000445888	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-3CDS	ENST00000445888	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
5UTR-intron	ENST00000445888	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-3CDS	ENST00000574684	ENST00000268719		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-3CDS	ENST00000574684	ENST00000376345		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-intron	ENST00000574684	ENST00000579871		TCGA	LD	LGG	TCGA-DU-5853-01A	TP53	chr17	7590695	-	GID4	chr17	17948461	+
intron-3CDS	ENST00000525842	ENST00000313005		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000525842	ENST00000528053		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000525842	ENST00000445823		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000525842	ENST00000428381		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000525842	ENST00000513780		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-5UTR	ENST00000525842	ENST00000514464		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000525842	ENST00000392937		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000525842	ENST00000510630		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000397753	ENST00000313005		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000397753	ENST00000528053		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000397753	ENST00000445823		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000397753	ENST00000428381		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000397753	ENST00000513780		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-5UTR	ENST00000397753	ENST00000514464		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000397753	ENST00000392937		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000397753	ENST00000510630		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000357899	ENST00000313005		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000357899	ENST00000528053		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000357899	ENST00000445823		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000357899	ENST00000428381		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000357899	ENST00000513780		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-5UTR	ENST00000357899	ENST00000514464		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000357899	ENST00000392937		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000357899	ENST00000510630		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000530205	ENST00000313005		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000530205	ENST00000528053		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000530205	ENST00000445823		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000530205	ENST00000428381		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-3CDS	ENST00000530205	ENST00000513780		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-5UTR	ENST00000530205	ENST00000514464		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000530205	ENST00000392937		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
intron-intron	ENST00000530205	ENST00000510630		TCGA	LD	LGG	TCGA-DU-5855-01A	ZBTB44	chr11	130106005	-	BACE1	chr11	117167677	-
5CDS-intron	ENST00000506866	ENST00000474362		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000374721		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000489388		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000374726		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000429130		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000469949		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000460270		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000354759		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000489321		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000395895		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000374728		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000345491		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000333809		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000439705		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000337656		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000374734		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000479070		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000506866	ENST00000348787		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000361599		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000484283		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000395887		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000463314		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000342105		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000463960		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000487763		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000473940		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000488328		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000356917		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000488741		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000474931		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000468236		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000344351		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000506866	ENST00000490511		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000474362		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000374721		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000489388		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000374726		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000429130		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000469949		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000460270		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000354759		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000489321		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000395895		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000374728		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000345491		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000333809		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000439705		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000337656		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000374734		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000479070		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000274031	ENST00000348787		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000361599		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000484283		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000395887		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000463314		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000342105		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000463960		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000487763		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000473940		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000488328		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000356917		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000488741		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000474931		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000468236		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000344351		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000274031	ENST00000490511		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000474362		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000374721		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000489388		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000374726		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000429130		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000469949		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000460270		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000354759		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000489321		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000395895		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000374728		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000345491		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000333809		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000439705		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000337656		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000374734		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000479070		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000404104	ENST00000348787		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000361599		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000484283		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000395887		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000463314		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000342105		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000463960		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000487763		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000473940		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000488328		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000356917		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000488741		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000474931		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000468236		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000344351		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000404104	ENST00000490511		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000474362		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000374721		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000489388		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000374726		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000429130		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000469949		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000460270		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000354759		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000489321		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000395895		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000374728		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000345491		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000333809		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000439705		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000337656		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000374734		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000479070		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000406354	ENST00000348787		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000361599		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000484283		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000395887		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000463314		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000342105		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000463960		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000487763		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000473940		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000488328		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000356917		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000488741		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000474931		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000468236		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000344351		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000406354	ENST00000490511		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000474362		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000374721		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000489388		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000374726		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000429130		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000469949		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000460270		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000354759		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000489321		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000395895		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000374728		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000345491		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000333809		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000439705		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000337656		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000374734		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000479070		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000608958	ENST00000348787		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000361599		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000484283		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000395887		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000463314		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000342105		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000463960		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000487763		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000473940		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000488328		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000356917		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000488741		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000474931		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000468236		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000344351		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
intron-intron	ENST00000608958	ENST00000490511		TCGA	LD	LGG	TCGA-DU-5871-01A	SETD7	chr4	140439039	-	CREM	chr10	35437296	+
Frame-shit	ENST00000393805	ENST00000254636		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
Frame-shit	ENST00000393805	ENST00000449247		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
Frame-shit	ENST00000393805	ENST00000410111		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
Frame-shit	ENST00000393805	ENST00000442664		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
Frame-shit	ENST00000393805	ENST00000409051		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
5CDS-intron	ENST00000393805	ENST00000490238		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000377332	ENST00000254636		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000377332	ENST00000449247		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000377332	ENST00000410111		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000377332	ENST00000442664		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000377332	ENST00000409051		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
5CDS-intron	ENST00000377332	ENST00000490238		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000525834	ENST00000254636		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000525834	ENST00000449247		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000525834	ENST00000410111		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000525834	ENST00000442664		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000525834	ENST00000409051		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-intron	ENST00000525834	ENST00000490238		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000484728	ENST00000254636		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000484728	ENST00000449247		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000484728	ENST00000410111		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000484728	ENST00000442664		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-3CDS	ENST00000484728	ENST00000409051		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
intron-intron	ENST00000484728	ENST00000490238		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000393808	ENST00000254636		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000393808	ENST00000449247		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000393808	ENST00000410111		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000393808	ENST00000442664		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
In-frame	ENST00000393808	ENST00000409051		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
5CDS-intron	ENST00000393808	ENST00000490238		TCGA	LD	LGG	TCGA-DU-6396-01A	ST3GAL5	chr2	86071519	-	IMMT	chr2	86374956	-
3UTR-3CDS	ENST00000318801	ENST00000216160		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
3UTR-3CDS	ENST00000318801	ENST00000331454		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
3UTR-intron	ENST00000318801	ENST00000488859		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000216155	ENST00000216160		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000216155	ENST00000331454		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-intron	ENST00000216155	ENST00000488859		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000406293	ENST00000216160		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000406293	ENST00000331454		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-intron	ENST00000406293	ENST00000488859		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000328933	ENST00000216160		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-3CDS	ENST00000328933	ENST00000331454		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
intron-intron	ENST00000328933	ENST00000488859		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
3UTR-3CDS	ENST00000381535	ENST00000216160		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
3UTR-3CDS	ENST00000381535	ENST00000331454		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
3UTR-intron	ENST00000381535	ENST00000488859		TCGA	LD	LGG	TCGA-DU-6396-01A	SYNGR1	chr22	39773829	+	TAB1	chr22	39811011	+
In-frame	ENST00000356433	ENST00000599117		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000356433	ENST00000432763		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000356433	ENST00000402194		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000356433	ENST00000359191		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000356433	ENST00000598725		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000600579	ENST00000599117		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000600579	ENST00000432763		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000600579	ENST00000402194		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000600579	ENST00000359191		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000600579	ENST00000598725		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000205143	ENST00000599117		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000205143	ENST00000432763		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000205143	ENST00000402194		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000205143	ENST00000359191		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000205143	ENST00000598725		TCGA	LD	LGG	TCGA-DU-6400-01A	DLL3	chr19	39998554	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000528282	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000528282	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000530481	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000530481	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000445890	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000445890	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
5UTR-3CDS	ENST00000337057	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
5UTR-intron	ENST00000337057	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000530757	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000530757	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
5UTR-3CDS	ENST00000392427	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
5UTR-intron	ENST00000392427	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000368128	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000368128	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000527411	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000527411	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000524581	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000524581	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000525271	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000525271	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000525193	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000525193	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000527659	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000527659	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000529208	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000529208	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000531410	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000531410	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-3CDS	ENST00000530148	ENST00000356840		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
intron-intron	ENST00000530148	ENST00000349606		TCGA	LD	LGG	TCGA-DU-6402-01A	EPB41L2	chr6	131384295	-	MYLIP	chr6	16130788	+
Frame-shit	ENST00000360079	ENST00000511725		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000360079	ENST00000253815		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000360079	ENST00000398733		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000360079	ENST00000505548		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000402580	ENST00000511725		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000402580	ENST00000253815		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000402580	ENST00000398733		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000402580	ENST00000505548		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000428575	ENST00000511725		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000428575	ENST00000253815		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000428575	ENST00000398733		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000428575	ENST00000505548		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000359308	ENST00000511725		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000359308	ENST00000253815		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000359308	ENST00000398733		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000359308	ENST00000505548		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405878	ENST00000511725		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405878	ENST00000253815		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405878	ENST00000398733		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405878	ENST00000505548		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405506	ENST00000511725		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405506	ENST00000253815		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405506	ENST00000398733		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
Frame-shit	ENST00000405506	ENST00000505548		TCGA	LD	LGG	TCGA-DU-6402-01A	XRCC6	chr22	42033795	+	UBE2D2	chr5	138994171	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000302538	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000302538	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000302538	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000544583	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000544583	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000544583	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000572441	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000572441	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000572441	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000574437	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000574437	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000574437	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000291107	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000291107	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000291107	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000543210	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000543210	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000543210	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000536794	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000536794	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000536794	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000573895	ENST00000571732		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000573895	ENST00000573026		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000573895	ENST00000575977		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LGG	TCGA-DU-6404-01A	ABR	chr17	1132087	-	YWHAE	chr17	1248793	-
intron-3UTR	ENST00000378455	ENST00000263253		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931308	-	EP300	chr22	41575157	+
intron-3UTR	ENST00000342274	ENST00000263253		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931308	-	EP300	chr22	41575157	+
intron-3UTR	ENST00000378463	ENST00000263253		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931308	-	EP300	chr22	41575157	+
intron-3UTR	ENST00000397354	ENST00000263253		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931308	-	EP300	chr22	41575157	+
intron-3UTR	ENST00000378444	ENST00000263253		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931308	-	EP300	chr22	41575157	+
5CDS-5UTR	ENST00000378455	ENST00000216237		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-intron	ENST00000378455	ENST00000489136		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-5UTR	ENST00000342274	ENST00000216237		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-intron	ENST00000342274	ENST00000489136		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
intron-5UTR	ENST00000378463	ENST00000216237		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
intron-intron	ENST00000378463	ENST00000489136		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-5UTR	ENST00000397354	ENST00000216237		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-intron	ENST00000397354	ENST00000489136		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-5UTR	ENST00000378444	ENST00000216237		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
5CDS-intron	ENST00000378444	ENST00000489136		TCGA	LD	LGG	TCGA-DU-6404-01A	BCOR	chrX	39931602	-	L3MBTL2	chr22	41601255	+
Frame-shit	ENST00000263253	ENST00000378455		TCGA	LD	LGG	TCGA-DU-6404-01A	EP300	chr22	41573820	+	BCOR	chrX	39930412	-
Frame-shit	ENST00000263253	ENST00000342274		TCGA	LD	LGG	TCGA-DU-6404-01A	EP300	chr22	41573820	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000378463		TCGA	LD	LGG	TCGA-DU-6404-01A	EP300	chr22	41573820	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000397354		TCGA	LD	LGG	TCGA-DU-6404-01A	EP300	chr22	41573820	+	BCOR	chrX	39930412	-
5CDS-intron	ENST00000263253	ENST00000378444		TCGA	LD	LGG	TCGA-DU-6404-01A	EP300	chr22	41573820	+	BCOR	chrX	39930412	-
In-frame	ENST00000337019	ENST00000275262		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000337019	ENST00000392127		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000337019	ENST00000453779		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000337019	ENST00000361752		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000337019	ENST00000361195		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000337019	ENST00000424802		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366889	ENST00000275262		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366889	ENST00000392127		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366889	ENST00000453779		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366889	ENST00000361752		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366889	ENST00000361195		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366889	ENST00000424802		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366888	ENST00000275262		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366888	ENST00000392127		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366888	ENST00000453779		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366888	ENST00000361752		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366888	ENST00000361195		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
In-frame	ENST00000366888	ENST00000424802		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
3UTR-3CDS	ENST00000542669	ENST00000275262		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
3UTR-3CDS	ENST00000542669	ENST00000392127		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
3UTR-3CDS	ENST00000542669	ENST00000453779		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
3UTR-3CDS	ENST00000542669	ENST00000361752		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
3UTR-3CDS	ENST00000542669	ENST00000361195		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
3UTR-3CDS	ENST00000542669	ENST00000424802		TCGA	LD	LGG	TCGA-DU-6404-01A	PACRG	chr6	163235313	+	QKI	chr6	163983014	+
5CDS-3UTR	ENST00000296603	ENST00000398907		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000398905		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000288319		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000398897		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000398911		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000398910		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000417133		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-3UTR	ENST00000296603	ENST00000442448		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-intron	ENST00000296603	ENST00000453032		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-intron	ENST00000296603	ENST00000398919		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-intron	ENST00000296603	ENST00000429727		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-intron	ENST00000296603	ENST00000485493		TCGA	LD	LGG	TCGA-DU-6406-01A	LMBRD2	chr5	36108636	-	ERG	chr21	39752323	-
5CDS-intron	ENST00000409559	ENST00000410075		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000409559	ENST00000377802		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000409559	ENST00000355812		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000409559	ENST00000409544		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000409559	ENST00000264447		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000409559	ENST00000409407		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000263655	ENST00000410075		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000263655	ENST00000377802		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000263655	ENST00000355812		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000263655	ENST00000409544		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000263655	ENST00000264447		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000263655	ENST00000409407		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5UTR-intron	ENST00000481714	ENST00000410075		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5UTR-intron	ENST00000481714	ENST00000377802		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5UTR-intron	ENST00000481714	ENST00000355812		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5UTR-intron	ENST00000481714	ENST00000409544		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5UTR-intron	ENST00000481714	ENST00000264447		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5UTR-intron	ENST00000481714	ENST00000409407		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000409862	ENST00000410075		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000409862	ENST00000377802		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000409862	ENST00000355812		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000409862	ENST00000409544		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000409862	ENST00000264447		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000409862	ENST00000409407		TCGA	LD	LGG	TCGA-DU-6410-01A	CNRIP1	chr2	68544289	-	ZNF638	chr2	71623271	+
5CDS-3UTR	ENST00000268459	ENST00000526417		TCGA	LD	LGG	TCGA-DU-6410-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
5CDS-3UTR	ENST00000268459	ENST00000300589		TCGA	LD	LGG	TCGA-DU-6410-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3UTR	ENST00000564336	ENST00000526417		TCGA	LD	LGG	TCGA-DU-6410-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3UTR	ENST00000564336	ENST00000300589		TCGA	LD	LGG	TCGA-DU-6410-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
In-frame	ENST00000528443	ENST00000263733		TCGA	LD	LGG	TCGA-DU-6542-01A	TOR1AIP1	chr1	179883189	+	FAM20B	chr1	179033062	+
In-frame	ENST00000271583	ENST00000263733		TCGA	LD	LGG	TCGA-DU-6542-01A	TOR1AIP1	chr1	179883189	+	FAM20B	chr1	179033062	+
In-frame	ENST00000606911	ENST00000263733		TCGA	LD	LGG	TCGA-DU-6542-01A	TOR1AIP1	chr1	179883189	+	FAM20B	chr1	179033062	+
In-frame	ENST00000435319	ENST00000263733		TCGA	LD	LGG	TCGA-DU-6542-01A	TOR1AIP1	chr1	179883189	+	FAM20B	chr1	179033062	+
3UTR-3CDS	ENST00000474875	ENST00000263733		TCGA	LD	LGG	TCGA-DU-6542-01A	TOR1AIP1	chr1	179883189	+	FAM20B	chr1	179033062	+
5UTR-5UTR	ENST00000244769	ENST00000591513		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-3UTR	ENST00000244769	ENST00000590423		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-5UTR	ENST00000244769	ENST00000253410		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-5UTR	ENST00000244769	ENST00000587021		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-5UTR	ENST00000436367	ENST00000591513		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-3UTR	ENST00000436367	ENST00000590423		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-5UTR	ENST00000436367	ENST00000253410		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5UTR-5UTR	ENST00000436367	ENST00000587021		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
intron-5UTR	ENST00000467008	ENST00000591513		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
intron-3UTR	ENST00000467008	ENST00000590423		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
intron-5UTR	ENST00000467008	ENST00000253410		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
intron-5UTR	ENST00000467008	ENST00000587021		TCGA	LD	LGG	TCGA-DU-7006-01A	ATXN1	chr6	16658007	-	HIGD1B	chr17	42925428	+
5CDS-5UTR	ENST00000539107	ENST00000545802		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000539107	ENST00000546076		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000539107	ENST00000544427		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000539107	ENST00000535215		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000539107	ENST00000261177		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000545336	ENST00000545802		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000545336	ENST00000546076		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000545336	ENST00000544427		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000545336	ENST00000535215		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000545336	ENST00000261177		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381256	ENST00000545802		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381256	ENST00000546076		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000381256	ENST00000544427		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000381256	ENST00000535215		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381256	ENST00000261177		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381259	ENST00000545802		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381259	ENST00000546076		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000381259	ENST00000544427		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000381259	ENST00000535215		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000381259	ENST00000261177		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000540401	ENST00000545802		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000540401	ENST00000546076		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
3UTR-intron	ENST00000540401	ENST00000544427		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
3UTR-intron	ENST00000540401	ENST00000535215		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000540401	ENST00000261177		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000306172	ENST00000545802		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000306172	ENST00000546076		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000306172	ENST00000544427		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-intron	ENST00000306172	ENST00000535215		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000306172	ENST00000261177		TCGA	LD	LGG	TCGA-DU-7007-01A	CCDC91	chr12	28515448	+	TSPAN11	chr12	31106915	+
5CDS-5UTR	ENST00000543086	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000543086	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000543086	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000543086	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000543086	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000546231	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000546231	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000546231	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000546231	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000546231	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000397203	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000397203	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000397203	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000397203	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000397203	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000360905	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000360905	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000360905	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000360905	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000360905	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000589028	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000589028	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000589028	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000589028	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000589028	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000355446	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-3UTR	ENST00000355446	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000355446	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000355446	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
5CDS-5UTR	ENST00000355446	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
3UTR-5UTR	ENST00000536573	ENST00000543824		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
3UTR-3UTR	ENST00000536573	ENST00000433847		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
3UTR-5UTR	ENST00000536573	ENST00000433083		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
3UTR-5UTR	ENST00000536573	ENST00000544916		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
3UTR-5UTR	ENST00000536573	ENST00000536844		TCGA	LD	LGG	TCGA-DU-7007-01A	ERC1	chr12	1346070	+	PHC1	chr12	9070226	+
intron-3CDS	ENST00000534526	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000534526	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000534526	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000534526	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000534526	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000534526	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000531134	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000531134	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000531134	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000531134	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000531134	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000531134	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000427716	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000427716	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000427716	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000427716	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000427716	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000427716	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000266482	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000266482	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000266482	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000266482	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000266482	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000266482	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000546442	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000546442	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000546442	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000546442	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000546442	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000546442	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000525053	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000525053	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000525053	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000525053	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000525053	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000525053	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000381025	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000381025	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000381025	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3CDS	ENST00000381025	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000381025	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
intron-3UTR	ENST00000381025	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000472289	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000472289	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000472289	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3CDS	ENST00000472289	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000472289	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5UTR-3UTR	ENST00000472289	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
3UTR-3CDS	ENST00000473513	ENST00000539107		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
3UTR-3CDS	ENST00000473513	ENST00000545336		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
3UTR-3CDS	ENST00000473513	ENST00000381256		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
3UTR-3CDS	ENST00000473513	ENST00000381259		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
3UTR-3UTR	ENST00000473513	ENST00000540401		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
3UTR-3UTR	ENST00000473513	ENST00000306172		TCGA	LD	LGG	TCGA-DU-7007-01A	FGD4	chr12	32655272	+	CCDC91	chr12	28515371	+
5CDS-5UTR	ENST00000492622	ENST00000607251		TCGA	LD	LGG	TCGA-DU-7007-01A	FNDC3A	chr13	49720071	+	FGF14-IT1	chr13	102946390	-
5CDS-5UTR	ENST00000541916	ENST00000607251		TCGA	LD	LGG	TCGA-DU-7007-01A	FNDC3A	chr13	49720071	+	FGF14-IT1	chr13	102946390	-
5CDS-5UTR	ENST00000398316	ENST00000607251		TCGA	LD	LGG	TCGA-DU-7007-01A	FNDC3A	chr13	49720071	+	FGF14-IT1	chr13	102946390	-
5CDS-intron	ENST00000260372	ENST00000249647		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000260372	ENST00000566141		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000260372	ENST00000564153		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000260372	ENST00000349777		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000260372	ENST00000567094		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000260372	ENST00000397138		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568876	ENST00000249647		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568876	ENST00000566141		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568876	ENST00000564153		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568876	ENST00000349777		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568876	ENST00000567094		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568876	ENST00000397138		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568846	ENST00000249647		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568846	ENST00000566141		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568846	ENST00000564153		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568846	ENST00000349777		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568846	ENST00000567094		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
5CDS-intron	ENST00000568846	ENST00000397138		TCGA	LD	LGG	TCGA-DU-7007-01A	HAUS2	chr15	42841163	+	SNAP23	chr15	42837334	+
Frame-shit	ENST00000397096	ENST00000381340		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000397096	ENST00000545902		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000397096	ENST00000242737		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
Frame-shit	ENST00000427057	ENST00000381340		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000427057	ENST00000545902		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000427057	ENST00000242737		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
Frame-shit	ENST00000228820	ENST00000381340		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000228820	ENST00000545902		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000228820	ENST00000242737		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
Frame-shit	ENST00000447133	ENST00000381340		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000447133	ENST00000545902		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5CDS-intron	ENST00000447133	ENST00000242737		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5UTR-3CDS	ENST00000476985	ENST00000381340		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5UTR-intron	ENST00000476985	ENST00000545902		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
5UTR-intron	ENST00000476985	ENST00000242737		TCGA	LD	LGG	TCGA-DU-7007-01A	PARP11	chr12	3931039	-	ITPR2	chr12	26878698	-
intron-3CDS	ENST00000554719	ENST00000238561		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000554719	ENST00000341211		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000554719	ENST00000556560		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000335750	ENST00000238561		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000335750	ENST00000341211		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000335750	ENST00000556560		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000557594	ENST00000238561		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000557594	ENST00000341211		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000557594	ENST00000556560		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000281127	ENST00000238561		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000281127	ENST00000341211		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000281127	ENST00000556560		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000428277	ENST00000238561		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000428277	ENST00000341211		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000428277	ENST00000556560		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000556003	ENST00000238561		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-3CDS	ENST00000556003	ENST00000341211		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000556003	ENST00000556560		TCGA	LD	LGG	TCGA-DU-7008-01A	NRXN3	chr14	78637017	+	ADCK1	chr14	78353434	+
intron-intron	ENST00000333972	ENST00000537081		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
intron-5UTR	ENST00000333972	ENST00000257861		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
intron-intron	ENST00000333972	ENST00000550083		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
intron-intron	ENST00000286494	ENST00000537081		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
intron-5UTR	ENST00000286494	ENST00000257861		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
intron-intron	ENST00000286494	ENST00000550083		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
5CDS-intron	ENST00000477314	ENST00000537081		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
5CDS-5UTR	ENST00000477314	ENST00000257861		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
5CDS-intron	ENST00000477314	ENST00000550083		TCGA	LD	LGG	TCGA-DU-7013-01A	ARHGEF25	chr12	58013162	+	AVIL	chr12	58210144	-
5CDS-intron	ENST00000537081	ENST00000549231		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
5CDS-intron	ENST00000537081	ENST00000355673		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
5CDS-intron	ENST00000537081	ENST00000431731		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
5CDS-intron	ENST00000257861	ENST00000549231		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
5CDS-intron	ENST00000257861	ENST00000355673		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
5CDS-intron	ENST00000257861	ENST00000431731		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
intron-intron	ENST00000550083	ENST00000549231		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
intron-intron	ENST00000550083	ENST00000355673		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
intron-intron	ENST00000550083	ENST00000431731		TCGA	LD	LGG	TCGA-DU-7013-01A	AVIL	chr12	58207935	-	MBD6	chr12	57921631	+
5CDS-5UTR	ENST00000398073	ENST00000341156		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000398073	ENST00000418555		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000398073	ENST00000449184		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000398073	ENST00000550764		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000398073	ENST00000552350		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000398073	ENST00000550943		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000548823	ENST00000341156		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000548823	ENST00000418555		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000548823	ENST00000449184		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000548823	ENST00000550764		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000548823	ENST00000552350		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-5UTR	ENST00000548823	ENST00000550943		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000547701	ENST00000341156		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000547701	ENST00000418555		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000547701	ENST00000449184		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000547701	ENST00000550764		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000547701	ENST00000552350		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000547701	ENST00000550943		TCGA	LD	LGG	TCGA-DU-7013-01A	CTDSP2	chr12	58240155	-	B4GALNT1	chr12	58025916	-
5CDS-3UTR	ENST00000548249	ENST00000553221		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000548249	ENST00000257910		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000548249	ENST00000547992		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000548249	ENST00000547472		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-3UTR	ENST00000537439	ENST00000553221		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000537439	ENST00000257910		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000537439	ENST00000547992		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000537439	ENST00000547472		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-3UTR	ENST00000434715	ENST00000553221		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000434715	ENST00000257910		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000434715	ENST00000547992		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000434715	ENST00000547472		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-3UTR	ENST00000543672	ENST00000553221		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000543672	ENST00000257910		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000543672	ENST00000547992		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
5CDS-intron	ENST00000543672	ENST00000547472		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
intron-3UTR	ENST00000551400	ENST00000553221		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
intron-intron	ENST00000551400	ENST00000257910		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
intron-intron	ENST00000551400	ENST00000547992		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
intron-intron	ENST00000551400	ENST00000547472		TCGA	LD	LGG	TCGA-DU-7013-01A	DCTN2	chr12	57925798	-	TSPAN31	chr12	58137023	+
In-frame	ENST00000552285	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000552285	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000315970	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000315970	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000439210	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
intron-3CDS	ENST00000439210	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389146	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389146	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000413095	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000413095	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000551035	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000551035	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000435406	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000435406	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000257966	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000257966	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389142	ENST00000455537		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000389142	ENST00000286452		TCGA	LD	LGG	TCGA-DU-7013-01A	OS9	chr12	58088709	+	KIF5A	chr12	57960909	+
In-frame	ENST00000277541	ENST00000357365		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
In-frame	ENST00000277541	ENST00000298537		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
In-frame	ENST00000277541	ENST00000371725		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
5CDS-intron	ENST00000277541	ENST00000461693		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
intron-3CDS	ENST00000491649	ENST00000357365		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
intron-3CDS	ENST00000491649	ENST00000298537		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
intron-3CDS	ENST00000491649	ENST00000371725		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
intron-intron	ENST00000491649	ENST00000461693		TCGA	LD	LGG	TCGA-DU-7014-01A	NOTCH1	chr9	139402407	-	SDCCAG3	chr9	139300430	-
intron-3CDS	ENST00000434693	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000434693	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000396583	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000396583	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000383767	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000383767	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000445033	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000445033	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000273139	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000273139	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000383766	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000383766	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000452462	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000452462	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000456853	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000456853	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000473799	ENST00000223864		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000473799	ENST00000482696		TCGA	LD	LGG	TCGA-DU-7014-01A	RBMS3	chr3	28617987	+	PLGRKT	chr9	5361888	-
5UTR-3CDS	ENST00000453654	ENST00000343508		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5UTR-3CDS	ENST00000453654	ENST00000297405		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5UTR-3CDS	ENST00000453654	ENST00000455883		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5UTR-intron	ENST00000453654	ENST00000352409		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5UTR-intron	ENST00000453654	ENST00000519485		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000288490	ENST00000343508		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000288490	ENST00000297405		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000288490	ENST00000455883		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5CDS-intron	ENST00000288490	ENST00000352409		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5CDS-intron	ENST00000288490	ENST00000519485		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000424189	ENST00000343508		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000424189	ENST00000297405		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000424189	ENST00000455883		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5CDS-intron	ENST00000424189	ENST00000352409		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5CDS-intron	ENST00000424189	ENST00000519485		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000446122	ENST00000343508		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000446122	ENST00000297405		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000446122	ENST00000455883		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5CDS-intron	ENST00000446122	ENST00000352409		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
5CDS-intron	ENST00000446122	ENST00000519485		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
intron-3CDS	ENST00000494390	ENST00000343508		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
intron-3CDS	ENST00000494390	ENST00000297405		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
intron-3CDS	ENST00000494390	ENST00000455883		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
intron-intron	ENST00000494390	ENST00000352409		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
intron-intron	ENST00000494390	ENST00000519485		TCGA	LD	LGG	TCGA-DU-7015-01A	DGKI	chr7	137531208	-	CSMD3	chr8	113421261	-
Frame-shit	ENST00000529443	ENST00000397109		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000529443	ENST00000337354		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000529443	ENST00000350697		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000529443	ENST00000397117		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000529443	ENST00000383801		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
5CDS-intron	ENST00000529443	ENST00000492602		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000299106	ENST00000397109		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000299106	ENST00000337354		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000299106	ENST00000350697		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000299106	ENST00000397117		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000299106	ENST00000383801		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
5CDS-intron	ENST00000299106	ENST00000492602		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000441717	ENST00000397109		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000441717	ENST00000337354		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000441717	ENST00000350697		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000441717	ENST00000397117		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
Frame-shit	ENST00000441717	ENST00000383801		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
5CDS-intron	ENST00000441717	ENST00000492602		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
3UTR-3CDS	ENST00000524969	ENST00000397109		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
3UTR-3CDS	ENST00000524969	ENST00000337354		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
3UTR-3CDS	ENST00000524969	ENST00000350697		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
3UTR-3CDS	ENST00000524969	ENST00000397117		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
3UTR-3CDS	ENST00000524969	ENST00000383801		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
3UTR-intron	ENST00000524969	ENST00000492602		TCGA	LD	LGG	TCGA-DU-7015-01A	JAM3	chr11	134010665	+	SEC13	chr3	10347376	-
5CDS-5UTR	ENST00000607016	ENST00000324771		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000418800		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000454612		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000376569		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000446312		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000376575		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000376570		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000376568		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000452441		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000508312		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-5UTR	ENST00000607016	ENST00000376567		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000513240		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000508472		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000361741		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000434428		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000483193		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000383377		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400414		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000259875		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000552721		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000553015		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000468225		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400411		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400410		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000412329		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000449518		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000427053		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000548962		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000548133		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000462241		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000415092		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000453510		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000550666		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000488414		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000422628		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400492		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400491		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400489		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000549026		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000550395		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000490712		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400488		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000400486		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000552434		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000430933		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000429699		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000421229		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000550384		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000552068		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000487780		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000454774		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000419412		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
5CDS-intron	ENST00000607016	ENST00000548693		TCGA	LD	LGG	TCGA-DU-7015-01A	NUDT3	chr6	34309639	-	DDR1	chr6	30856465	+
3UTR-3CDS	ENST00000487159	ENST00000452722		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
3UTR-5UTR	ENST00000487159	ENST00000537140		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
3UTR-5UTR	ENST00000487159	ENST00000542447		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
3UTR-5UTR	ENST00000487159	ENST00000537058		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
3UTR-5UTR	ENST00000487159	ENST00000536727		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
3UTR-5UTR	ENST00000487159	ENST00000331581		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-3CDS	ENST00000327628	ENST00000452722		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000327628	ENST00000537140		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000327628	ENST00000542447		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000327628	ENST00000537058		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000327628	ENST00000536727		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000327628	ENST00000331581		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-3CDS	ENST00000449246	ENST00000452722		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000449246	ENST00000537140		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000449246	ENST00000542447		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000449246	ENST00000537058		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000449246	ENST00000536727		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000449246	ENST00000331581		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-3CDS	ENST00000341421	ENST00000452722		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000341421	ENST00000537140		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000341421	ENST00000542447		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000341421	ENST00000537058		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000341421	ENST00000536727		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000341421	ENST00000331581		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-3CDS	ENST00000396175	ENST00000452722		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000396175	ENST00000537140		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000396175	ENST00000542447		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000396175	ENST00000537058		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000396175	ENST00000536727		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
intron-5UTR	ENST00000396175	ENST00000331581		TCGA	LD	LGG	TCGA-DU-7015-01A	TRAK1	chr3	42128892	+	CADM1	chr11	115049495	-
5CDS-intron	ENST00000338586	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338586	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338586	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338586	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338586	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338586	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338515	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338515	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338515	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338515	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338515	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000338515	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367171	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367171	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367171	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367171	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367171	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367171	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367169	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367169	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367169	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367169	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367169	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367169	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000539706	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000539706	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000539706	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000539706	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000539706	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000539706	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000339876	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000339876	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000339876	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000339876	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000339876	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000339876	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367170	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367170	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367170	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367170	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367170	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367170	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000360049	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000360049	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000360049	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000360049	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000360049	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000360049	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367172	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367172	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367172	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367172	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367172	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000367172	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
intron-intron	ENST00000403080	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
intron-intron	ENST00000403080	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
intron-intron	ENST00000403080	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
intron-intron	ENST00000403080	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
intron-intron	ENST00000403080	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
intron-intron	ENST00000403080	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404076	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404076	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404076	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404076	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404076	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404076	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000401399	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000401399	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000401399	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000401399	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000401399	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000401399	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404907	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404907	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404907	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404907	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404907	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000404907	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000513543	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000513543	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000513543	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000513543	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000513543	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
5CDS-intron	ENST00000513543	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
3UTR-intron	ENST00000495396	ENST00000352432		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
3UTR-intron	ENST00000495396	ENST00000343816		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
3UTR-intron	ENST00000495396	ENST00000360273		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
3UTR-intron	ENST00000495396	ENST00000383800		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
3UTR-intron	ENST00000495396	ENST00000397077		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
3UTR-intron	ENST00000495396	ENST00000467702		TCGA	LD	LGG	TCGA-DU-7292-01A	NFASC	chr1	204957934	+	ATP2B2	chr1	203708674	+
Frame-shit	ENST00000409699	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000409699	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000409699	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
Frame-shit	ENST00000360698	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000360698	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000360698	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
In-frame	ENST00000422354	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000422354	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000422354	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
In-frame	ENST00000395625	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000395625	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000395625	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
Frame-shit	ENST00000288745	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-5UTR	ENST00000288745	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5CDS-intron	ENST00000288745	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
intron-3CDS	ENST00000478721	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
intron-5UTR	ENST00000478721	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
intron-intron	ENST00000478721	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5UTR-3CDS	ENST00000395614	ENST00000307961		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5UTR-5UTR	ENST00000395614	ENST00000568588		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
5UTR-intron	ENST00000395614	ENST00000564517		TCGA	LD	LGG	TCGA-DU-7298-01A	MEGF11	chr15	66273116	-	RPL4	chr15	66795867	-
Frame-shit	ENST00000311129	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000311129	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000311129	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-5UTR	ENST00000311129	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
Frame-shit	ENST00000426998	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000426998	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000426998	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-5UTR	ENST00000426998	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
intron-3CDS	ENST00000530787	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
intron-intron	ENST00000530787	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
intron-intron	ENST00000530787	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
intron-5UTR	ENST00000530787	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
Frame-shit	ENST00000527614	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000527614	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000527614	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-5UTR	ENST00000527614	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
Frame-shit	ENST00000427203	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000427203	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000427203	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-5UTR	ENST00000427203	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
Frame-shit	ENST00000341980	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000341980	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000341980	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-5UTR	ENST00000341980	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
Frame-shit	ENST00000393055	ENST00000330062		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000393055	ENST00000539790		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000393055	ENST00000559482		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-5UTR	ENST00000393055	ENST00000540499		TCGA	LD	LGG	TCGA-DU-7298-01A	PPP2R1B	chr11	111613247	-	IDH2	chr15	90634876	-
5CDS-intron	ENST00000374586	ENST00000374723		TCGA	LD	LGG	TCGA-DU-7298-01A	TMEM245	chr9	111868788	-	SLC44A1	chr9	108200562	+
5CDS-intron	ENST00000374586	ENST00000374720		TCGA	LD	LGG	TCGA-DU-7298-01A	TMEM245	chr9	111868788	-	SLC44A1	chr9	108200562	+
5CDS-intron	ENST00000374586	ENST00000374724		TCGA	LD	LGG	TCGA-DU-7298-01A	TMEM245	chr9	111868788	-	SLC44A1	chr9	108200562	+
5CDS-intron	ENST00000374586	ENST00000343170		TCGA	LD	LGG	TCGA-DU-7298-01A	TMEM245	chr9	111868788	-	SLC44A1	chr9	108200562	+
5CDS-intron	ENST00000374586	ENST00000607692		TCGA	LD	LGG	TCGA-DU-7298-01A	TMEM245	chr9	111868788	-	SLC44A1	chr9	108200562	+
In-frame	ENST00000334651	ENST00000380155		TCGA	LD	LGG	TCGA-DU-7299-01A	DHRSX	chrY	2159543	-	SYAP1	chrX	16753350	+
5CDS-3UTR	ENST00000334651	ENST00000495743		TCGA	LD	LGG	TCGA-DU-7299-01A	DHRSX	chrY	2159543	-	SYAP1	chrX	16753350	+
intron-3CDS	ENST00000464935	ENST00000380155		TCGA	LD	LGG	TCGA-DU-7299-01A	DHRSX	chrY	2159543	-	SYAP1	chrX	16753350	+
intron-3UTR	ENST00000464935	ENST00000495743		TCGA	LD	LGG	TCGA-DU-7299-01A	DHRSX	chrY	2159543	-	SYAP1	chrX	16753350	+
5UTR-3CDS	ENST00000533760	ENST00000393020		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
5UTR-3CDS	ENST00000533760	ENST00000529221		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
5UTR-3CDS	ENST00000533760	ENST00000314756		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
5UTR-3CDS	ENST00000533760	ENST00000483239		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
5UTR-3UTR	ENST00000533760	ENST00000478125		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
3UTR-3CDS	ENST00000397957	ENST00000393020		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
3UTR-3CDS	ENST00000397957	ENST00000529221		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
3UTR-3CDS	ENST00000397957	ENST00000314756		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
3UTR-3CDS	ENST00000397957	ENST00000483239		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
3UTR-3UTR	ENST00000397957	ENST00000478125		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000316851	ENST00000393020		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000316851	ENST00000529221		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000316851	ENST00000314756		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000316851	ENST00000483239		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3UTR	ENST00000316851	ENST00000478125		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000401611	ENST00000393020		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000401611	ENST00000529221		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000401611	ENST00000314756		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000401611	ENST00000483239		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3UTR	ENST00000401611	ENST00000478125		TCGA	LD	LGG	TCGA-DU-7299-01A	NCAM1	chr11	112832386	+	TTC12	chr11	113212559	+
intron-3CDS	ENST00000394413	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394413	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394413	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394413	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000530902	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000530902	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000530902	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000530902	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000508545	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000508545	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000508545	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000508545	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000394414	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000394414	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394414	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394414	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394411	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394411	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394411	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394411	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000453001	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000453001	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000453001	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000453001	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5UTR-3CDS	ENST00000356826	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5UTR-3CDS	ENST00000356826	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5UTR-intron	ENST00000356826	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5UTR-intron	ENST00000356826	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394410	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394410	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394410	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394410	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000336640	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000336640	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000336640	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000336640	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000504198	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000504198	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000504198	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000504198	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394409	ENST00000398514		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394409	ENST00000343218		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394409	ENST00000534907		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394409	ENST00000504965		TCGA	LD	LGG	TCGA-DU-7299-01A	PPP2R2B	chr5	146435228	-	DPYSL3	chr5	146804526	-
5CDS-5UTR	ENST00000297423	ENST00000523207		TCGA	LD	LGG	TCGA-DU-7299-01A	SPIDR	chr8	48206619	+	KCNB2	chr8	73479877	+
5CDS-5UTR	ENST00000518074	ENST00000523207		TCGA	LD	LGG	TCGA-DU-7299-01A	SPIDR	chr8	48206619	+	KCNB2	chr8	73479877	+
5CDS-5UTR	ENST00000541342	ENST00000523207		TCGA	LD	LGG	TCGA-DU-7299-01A	SPIDR	chr8	48206619	+	KCNB2	chr8	73479877	+
3UTR-5UTR	ENST00000521214	ENST00000523207		TCGA	LD	LGG	TCGA-DU-7299-01A	SPIDR	chr8	48206619	+	KCNB2	chr8	73479877	+
intron-5UTR	ENST00000517693	ENST00000523207		TCGA	LD	LGG	TCGA-DU-7299-01A	SPIDR	chr8	48206619	+	KCNB2	chr8	73479877	+
intron-5UTR	ENST00000518060	ENST00000523207		TCGA	LD	LGG	TCGA-DU-7299-01A	SPIDR	chr8	48206619	+	KCNB2	chr8	73479877	+
Frame-shit	ENST00000276185	ENST00000372435		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000276185	ENST00000372428		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000276185	ENST00000372419		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
5CDS-5UTR	ENST00000276185	ENST00000543248		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
5CDS-intron	ENST00000276185	ENST00000372418		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
intron-3CDS	ENST00000477796	ENST00000372435		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
intron-5UTR	ENST00000477796	ENST00000372428		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
intron-5UTR	ENST00000477796	ENST00000372419		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
intron-5UTR	ENST00000477796	ENST00000543248		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
intron-intron	ENST00000477796	ENST00000372418		TCGA	LD	LGG	TCGA-DU-7301-01A	FRMPD3	chrX	106819689	+	PRPS1	chrX	106882525	+
5CDS-3UTR	ENST00000425441	ENST00000420502		TCGA	LD	LGG	TCGA-DU-7304-01A	CCDC12	chr3	47018127	-	SLC38A3	chr3	50251582	+
5CDS-3UTR	ENST00000292314	ENST00000420502		TCGA	LD	LGG	TCGA-DU-7304-01A	CCDC12	chr3	47018127	-	SLC38A3	chr3	50251582	+
5CDS-3UTR	ENST00000546280	ENST00000420502		TCGA	LD	LGG	TCGA-DU-7304-01A	CCDC12	chr3	47018127	-	SLC38A3	chr3	50251582	+
intron-3UTR	ENST00000605358	ENST00000420502		TCGA	LD	LGG	TCGA-DU-7304-01A	CCDC12	chr3	47018127	-	SLC38A3	chr3	50251582	+
5CDS-5UTR	ENST00000393386	ENST00000397752		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393386	ENST00000318493		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000436117		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000495962		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393386	ENST00000539704		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000397752		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000449182	ENST00000318493		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000436117		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000495962		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5CDS-intron	ENST00000449182	ENST00000539704		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000397752		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-5UTR	ENST00000483028	ENST00000318493		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000436117		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000495962		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
intron-intron	ENST00000483028	ENST00000539704		TCGA	LD	LGG	TCGA-DU-7304-01A	PTPRZ1	chr7	121513611	+	MET	chr7	116339125	+
5UTR-3CDS	ENST00000367689	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-3CDS	ENST00000367689	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-3CDS	ENST00000367689	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-3CDS	ENST00000367689	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-3CDS	ENST00000367689	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-3CDS	ENST00000367689	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-3CDS	ENST00000367689	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5UTR-intron	ENST00000367689	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000357444	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5CDS-intron	ENST00000357444	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
In-frame	ENST00000251507	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
5CDS-intron	ENST00000251507	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000325589	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000325589	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367686	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000367686	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367687	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000367687	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000347255	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000347255	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000489615	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000489615	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000478442	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000478442	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000486220	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000486220	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000392064	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000392064	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000399322		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000258767		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000403951		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000402815		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000407950		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000444700		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-3CDS	ENST00000367688	ENST00000406247		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-intron	ENST00000367688	ENST00000403963		TCGA	LD	LGG	TCGA-DU-7304-01A	RABGAP1L	chr1	174190302	+	DGKB	chr7	14217776	-
intron-5UTR	ENST00000438423	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000438423	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000438423	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000438423	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000267811	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000267811	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000267811	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000267811	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000452095	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000452095	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000452095	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000452095	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000333725	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000333725	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000333725	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000333725	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000557843	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000557843	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000557843	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000557843	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000560764	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000560764	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000560764	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000560764	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000543579	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000543579	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000543579	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000543579	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000537840	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000537840	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000537840	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000537840	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000343827	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000343827	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000343827	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000343827	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559710	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559710	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559710	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559710	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559703	ENST00000312293		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559703	ENST00000393681		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559703	ENST00000393679		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
intron-5UTR	ENST00000559703	ENST00000393676		TCGA	LD	LGG	TCGA-DU-7304-01A	TCF12	chr15	57426698	+	FOLR1	chr11	71903210	+
Frame-shit	ENST00000546283	ENST00000263097		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000546283	ENST00000606983		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000546283	ENST00000348419		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000546283	ENST00000565096		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000546283	ENST00000562958		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
Frame-shit	ENST00000233627	ENST00000263097		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000233627	ENST00000606983		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000233627	ENST00000348419		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000233627	ENST00000565096		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000233627	ENST00000562958		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
Frame-shit	ENST00000539480	ENST00000263097		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000539480	ENST00000606983		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000539480	ENST00000348419		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000539480	ENST00000565096		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000539480	ENST00000562958		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
Frame-shit	ENST00000313408	ENST00000263097		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000313408	ENST00000606983		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000313408	ENST00000348419		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000313408	ENST00000565096		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000313408	ENST00000562958		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
Frame-shit	ENST00000414651	ENST00000263097		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000414651	ENST00000606983		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000414651	ENST00000348419		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000414651	ENST00000565096		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
5CDS-3UTR	ENST00000414651	ENST00000562958		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
intron-3CDS	ENST00000540530	ENST00000263097		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000540530	ENST00000606983		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000540530	ENST00000348419		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000540530	ENST00000565096		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
intron-3UTR	ENST00000540530	ENST00000562958		TCGA	LD	LGG	TCGA-DU-7306-01A	NDUFS7	chr19	1383941	+	CNN2	chr19	1031070	+
3UTR-3CDS	ENST00000537454	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000537454	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000537454	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000537454	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000537454	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000221891	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000221891	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000221891	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000221891	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
3UTR-3CDS	ENST00000221891	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
Frame-shit	ENST00000586861	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
Frame-shit	ENST00000586861	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
Frame-shit	ENST00000586861	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
Frame-shit	ENST00000586861	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
Frame-shit	ENST00000586861	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
intron-3CDS	ENST00000589298	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
intron-3CDS	ENST00000589298	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
intron-3CDS	ENST00000589298	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
intron-3CDS	ENST00000589298	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
intron-3CDS	ENST00000589298	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8158-01A	APLP1	chr19	36370399	+	CLU	chr8	27462685	-
In-frame	ENST00000361216	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000361216	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000361216	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000361216	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000361216	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000392233	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000392233	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000392233	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000392233	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
In-frame	ENST00000392233	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000459972	ENST00000316403		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000459972	ENST00000546343		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000459972	ENST00000560366		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000459972	ENST00000405140		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
intron-3CDS	ENST00000459972	ENST00000523500		TCGA	LD	LGG	TCGA-DU-8161-01A	ATP1A2	chr1	160091041	+	CLU	chr8	27464041	-
5CDS-3UTR	ENST00000377532	ENST00000494280		TCGA	LD	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2B	chr1	15792494	+
5CDS-intron	ENST00000377532	ENST00000375910		TCGA	LD	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2B	chr1	15792494	+
5CDS-3UTR	ENST00000361923	ENST00000494280		TCGA	LD	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2B	chr1	15792494	+
5CDS-intron	ENST00000361923	ENST00000375910		TCGA	LD	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2B	chr1	15792494	+
5CDS-3UTR	ENST00000377541	ENST00000494280		TCGA	LD	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2B	chr1	15792494	+
5CDS-intron	ENST00000377541	ENST00000375910		TCGA	LD	LGG	TCGA-DU-8161-01A	PER3	chr1	7845646	+	CELA2B	chr1	15792494	+
5CDS-5UTR	ENST00000406775	ENST00000421797		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000406775	ENST00000429546		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000406775	ENST00000352689		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-intron	ENST00000406775	ENST00000498778		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000342771	ENST00000421797		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000342771	ENST00000429546		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000342771	ENST00000352689		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
5CDS-intron	ENST00000342771	ENST00000498778		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000403018	ENST00000421797		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000403018	ENST00000429546		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000403018	ENST00000352689		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-intron	ENST00000403018	ENST00000498778		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000489774	ENST00000421797		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000489774	ENST00000429546		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000489774	ENST00000352689		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-intron	ENST00000489774	ENST00000498778		TCGA	LD	LGG	TCGA-DU-8162-01A	AUTS2	chr7	70246742	+	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000535699	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000535699	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000535699	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000538660	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000538660	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000538660	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000367400	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000367400	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000367400	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000367399	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000367399	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
5CDS-5UTR	ENST00000367399	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000543483	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000543483	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000543483	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000544212	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000544212	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000544212	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000367397	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000367397	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000367397	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000476483	ENST00000295591		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000476483	ENST00000335211		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
intron-5UTR	ENST00000476483	ENST00000451870		TCGA	LD	LGG	TCGA-DU-8163-01A	CRB1	chr1	197237612	+	IGFN1	chr1	201163282	+
In-frame	ENST00000332129	ENST00000339399		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
5CDS-3UTR	ENST00000332129	ENST00000473205		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
In-frame	ENST00000360529	ENST00000339399		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
5CDS-3UTR	ENST00000360529	ENST00000473205		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
In-frame	ENST00000461742	ENST00000339399		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
5CDS-3UTR	ENST00000461742	ENST00000473205		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
In-frame	ENST00000422435	ENST00000339399		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
5CDS-3UTR	ENST00000422435	ENST00000473205		TCGA	LD	LGG	TCGA-DU-8163-01A	KIF21B	chr1	200992471	-	ANP32B	chr9	100756913	+
intron-intron	ENST00000391918	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
intron-5UTR	ENST00000391918	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5CDS-intron	ENST00000291295	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5CDS-5UTR	ENST00000291295	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5CDS-intron	ENST00000597743	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5CDS-5UTR	ENST00000597743	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
3UTR-intron	ENST00000477244	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
3UTR-5UTR	ENST00000477244	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5UTR-intron	ENST00000598871	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5UTR-5UTR	ENST00000598871	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5UTR-intron	ENST00000594523	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
5UTR-5UTR	ENST00000594523	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
intron-intron	ENST00000599839	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
intron-5UTR	ENST00000599839	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
intron-intron	ENST00000596362	ENST00000601154		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
intron-5UTR	ENST00000596362	ENST00000221922		TCGA	LD	LGG	TCGA-DU-8166-01A	CALM3	chr19	47104694	+	CCDC9	chr19	47761587	+
3UTR-3CDS	ENST00000310358	ENST00000382743		TCGA	LD	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233215	-
3UTR-3CDS	ENST00000310358	ENST00000525319		TCGA	LD	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233215	-
3UTR-3CDS	ENST00000310358	ENST00000524564		TCGA	LD	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233215	-
3UTR-3CDS	ENST00000310358	ENST00000532956		TCGA	LD	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233215	-
3UTR-3CDS	ENST00000310358	ENST00000529382		TCGA	LD	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233215	-
3UTR-5UTR	ENST00000310358	ENST00000528702		TCGA	LD	LGG	TCGA-DU-8166-01A	SPON1	chr11	14063201	+	SIRT3	chr11	233215	-
In-frame	ENST00000262962	ENST00000221847		TCGA	LD	LGG	TCGA-DU-8167-01A	CCDC94	chr19	4267771	+	EBI3	chr19	4231188	+
Frame-shit	ENST00000355666	ENST00000609713		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000355666	ENST00000288309		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000399017	ENST00000609713		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000399017	ENST00000288309		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000354749	ENST00000609713		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000354749	ENST00000288309		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
3UTR-3CDS	ENST00000479930	ENST00000609713		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
3UTR-3CDS	ENST00000479930	ENST00000288309		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000540756	ENST00000609713		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000540756	ENST00000288309		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000399010	ENST00000609713		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000399010	ENST00000288309		TCGA	LD	LGG	TCGA-DU-8167-01A	TTC3	chr21	38497042	+	KCNJ6	chr21	38997786	-
5CDS-3UTR	ENST00000268459	ENST00000526417		TCGA	LD	LGG	TCGA-DU-8168-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
5CDS-3UTR	ENST00000268459	ENST00000300589		TCGA	LD	LGG	TCGA-DU-8168-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3UTR	ENST00000564336	ENST00000526417		TCGA	LD	LGG	TCGA-DU-8168-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3UTR	ENST00000564336	ENST00000300589		TCGA	LD	LGG	TCGA-DU-8168-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3CDS	ENST00000372189	ENST00000357028		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-3CDS	ENST00000372189	ENST00000292035		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-intron	ENST00000372189	ENST00000474263		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
In-frame	ENST00000372195	ENST00000357028		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
In-frame	ENST00000372195	ENST00000292035		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
5CDS-intron	ENST00000372195	ENST00000474263		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-3CDS	ENST00000372190	ENST00000357028		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-3CDS	ENST00000372190	ENST00000292035		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-intron	ENST00000372190	ENST00000474263		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-3CDS	ENST00000481260	ENST00000357028		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-3CDS	ENST00000481260	ENST00000292035		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
intron-intron	ENST00000481260	ENST00000474263		TCGA	LD	LGG	TCGA-DU-A5TT-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134738527	-
In-frame	ENST00000256339	ENST00000546474		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000256339	ENST00000327359		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000256339	ENST00000440513		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000392557		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000379937		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000547530		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000446501		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000379932		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000551787		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000549044		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000256339	ENST00000548421		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
In-frame	ENST00000555664	ENST00000546474		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000555664	ENST00000327359		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000555664	ENST00000440513		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000392557		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000379937		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000547530		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000446501		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000379932		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000551787		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000549044		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000555664	ENST00000548421		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
In-frame	ENST00000553484	ENST00000546474		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000553484	ENST00000327359		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000553484	ENST00000440513		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000392557		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000379937		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000547530		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000446501		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000379932		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000551787		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000549044		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000553484	ENST00000548421		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
In-frame	ENST00000393151	ENST00000546474		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000393151	ENST00000327359		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-5UTR	ENST00000393151	ENST00000440513		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000392557		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000379937		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000547530		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000446501		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000379932		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000551787		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000549044		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-intron	ENST00000393151	ENST00000548421		TCGA	LD	LGG	TCGA-DU-A5TU-01A	UNC79	chr14	94069764	+	BRF1	chr14	105752713	-
5CDS-3UTR	ENST00000335012	ENST00000486975		TCGA	LD	LGG	TCGA-DU-A5TW-01A	C3orf70	chr3	184870416	-	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000335012	ENST00000451576		TCGA	LD	LGG	TCGA-DU-A5TW-01A	C3orf70	chr3	184870416	-	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000335012	ENST00000064724		TCGA	LD	LGG	TCGA-DU-A5TW-01A	C3orf70	chr3	184870416	-	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000335012	ENST00000489485		TCGA	LD	LGG	TCGA-DU-A5TW-01A	C3orf70	chr3	184870416	-	CLDN11	chr3	170577772	+
5CDS-5UTR	ENST00000406775	ENST00000542120		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000406775	ENST00000229088		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000406775	ENST00000456757		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000406775	ENST00000539867		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000342771	ENST00000542120		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000342771	ENST00000229088		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000342771	ENST00000456757		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000342771	ENST00000539867		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000403018	ENST00000542120		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000403018	ENST00000229088		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000403018	ENST00000456757		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000403018	ENST00000539867		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
intron-5UTR	ENST00000489774	ENST00000542120		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
intron-5UTR	ENST00000489774	ENST00000229088		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
intron-intron	ENST00000489774	ENST00000456757		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
intron-intron	ENST00000489774	ENST00000539867		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AUTS2	chr7	69599557	+	TBC1D30	chr12	65221615	+
5CDS-3UTR	ENST00000404479	ENST00000553221		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000404479	ENST00000257910		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000404479	ENST00000547992		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-intron	ENST00000404479	ENST00000547472		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000318709	ENST00000553221		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000318709	ENST00000257910		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000318709	ENST00000547992		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-intron	ENST00000318709	ENST00000547472		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000459629	ENST00000553221		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000459629	ENST00000257910		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000459629	ENST00000547992		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
3UTR-intron	ENST00000459629	ENST00000547472		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000409301	ENST00000553221		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000409301	ENST00000257910		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000409301	ENST00000547992		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5CDS-intron	ENST00000409301	ENST00000547472		TCGA	LD	LGG	TCGA-DU-A5TY-01A	AVL9	chr7	32535414	+	TSPAN31	chr12	58139528	+
5UTR-3CDS	ENST00000547702	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000547702	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000547702	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000551295	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000551295	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000551295	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000547849	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000547849	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000547849	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000347616	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000347616	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000347616	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000348761	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000348761	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000348761	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000550305	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000550305	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000550305	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000360099	ENST00000402685		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000360099	ENST00000539469		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000360099	ENST00000298919		TCGA	LD	LGG	TCGA-DU-A5TY-01A	CNTN1	chr12	41086394	+	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000396352	ENST00000297063		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000338533		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000317020		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000440378		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000436884		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000453212		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000480192		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000396352	ENST00000415803		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-3CDS	ENST00000317201	ENST00000297063		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000338533		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000317020		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000440378		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000436884		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000453212		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000480192		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000317201	ENST00000415803		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-3CDS	ENST00000521401	ENST00000297063		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000338533		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000317020		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000440378		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000436884		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000453212		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000480192		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
intron-intron	ENST00000521401	ENST00000415803		TCGA	LD	LGG	TCGA-DU-A5TY-01A	HOXA3	chr7	27150345	-	KIAA0895	chr7	36429636	-
5CDS-5UTR	ENST00000396257	ENST00000319694		TCGA	LD	LGG	TCGA-DU-A5TY-01A	PLEKHA8	chr7	30094958	+	PRR15	chr7	29605801	+
5CDS-5UTR	ENST00000396259	ENST00000319694		TCGA	LD	LGG	TCGA-DU-A5TY-01A	PLEKHA8	chr7	30094958	+	PRR15	chr7	29605801	+
intron-5UTR	ENST00000483799	ENST00000319694		TCGA	LD	LGG	TCGA-DU-A5TY-01A	PLEKHA8	chr7	30094958	+	PRR15	chr7	29605801	+
5CDS-5UTR	ENST00000258679	ENST00000319694		TCGA	LD	LGG	TCGA-DU-A5TY-01A	PLEKHA8	chr7	30094958	+	PRR15	chr7	29605801	+
5CDS-5UTR	ENST00000449726	ENST00000319694		TCGA	LD	LGG	TCGA-DU-A5TY-01A	PLEKHA8	chr7	30094958	+	PRR15	chr7	29605801	+
5CDS-intron	ENST00000395535	ENST00000440768		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000359197		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000343574		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000331340		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000349824		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000357364		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000346667		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000438033		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000439701		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000395535	ENST00000413698		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-3UTR	ENST00000395535	ENST00000492782		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000440768		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000359197		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000343574		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000331340		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000349824		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000357364		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000346667		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000438033		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000439701		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000352861	ENST00000413698		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-3UTR	ENST00000352861	ENST00000492782		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000440768		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000359197		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000343574		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000331340		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000349824		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000357364		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000346667		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000438033		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000439701		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000415949	ENST00000413698		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-3UTR	ENST00000415949	ENST00000492782		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000440768		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000359197		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000343574		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000331340		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000349824		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000357364		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000346667		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000438033		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000439701		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-intron	ENST00000450622	ENST00000413698		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
5CDS-3UTR	ENST00000450622	ENST00000492782		TCGA	LD	LGG	TCGA-DU-A5TY-01A	SEC61G	chr7	54825188	-	IKZF1	chr7	50435704	+
intron-3CDS	ENST00000553221	ENST00000254770		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
intron-intron	ENST00000553221	ENST00000486376		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
In-frame	ENST00000257910	ENST00000254770		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
5CDS-intron	ENST00000257910	ENST00000486376		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
In-frame	ENST00000547992	ENST00000254770		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
5CDS-intron	ENST00000547992	ENST00000486376		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
In-frame	ENST00000547472	ENST00000254770		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
5CDS-intron	ENST00000547472	ENST00000486376		TCGA	LD	LGG	TCGA-DU-A5TY-01A	TSPAN31	chr12	58139000	+	LANCL2	chr7	55496068	+
Frame-shit	ENST00000398519	ENST00000508628		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000398519	ENST00000456466		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000398519	ENST00000582970		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000398519	ENST00000319921		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000398519	ENST00000336301		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000398519	ENST00000427003		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
Frame-shit	ENST00000314028	ENST00000508628		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000314028	ENST00000456466		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000314028	ENST00000582970		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000314028	ENST00000319921		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000314028	ENST00000336301		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000314028	ENST00000427003		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
Frame-shit	ENST00000392334	ENST00000508628		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000392334	ENST00000456466		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000392334	ENST00000582970		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000392334	ENST00000319921		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000392334	ENST00000336301		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
5CDS-intron	ENST00000392334	ENST00000427003		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
intron-3CDS	ENST00000578904	ENST00000508628		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
intron-intron	ENST00000578904	ENST00000456466		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
intron-intron	ENST00000578904	ENST00000582970		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
intron-intron	ENST00000578904	ENST00000319921		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
intron-intron	ENST00000578904	ENST00000336301		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
intron-intron	ENST00000578904	ENST00000427003		TCGA	LD	LGG	TCGA-DU-A76R-01A	CSNK1D	chr17	80231182	-	RNF213	chr17	78354631	+
Frame-shit	ENST00000534358	ENST00000255078		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
5CDS-intron	ENST00000534358	ENST00000539224		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
5CDS-intron	ENST00000534358	ENST00000541229		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
Frame-shit	ENST00000389506	ENST00000255078		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
5CDS-intron	ENST00000389506	ENST00000539224		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
5CDS-intron	ENST00000389506	ENST00000541229		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
Frame-shit	ENST00000354520	ENST00000255078		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
5CDS-intron	ENST00000354520	ENST00000539224		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
5CDS-intron	ENST00000354520	ENST00000541229		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
intron-3CDS	ENST00000420751	ENST00000255078		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
intron-intron	ENST00000420751	ENST00000539224		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
intron-intron	ENST00000420751	ENST00000541229		TCGA	LD	LGG	TCGA-DU-A7T6-01A	KMT2A	chr11	118382740	+	IGHMBP2	chr11	68685204	+
Frame-shit	ENST00000532317	ENST00000328257		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000532317	ENST00000398427		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000532317	ENST00000542710		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-intron	ENST00000532317	ENST00000543525		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000526033	ENST00000328257		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000526033	ENST00000398427		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000526033	ENST00000542710		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-intron	ENST00000526033	ENST00000543525		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000393346	ENST00000328257		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000393346	ENST00000398427		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000393346	ENST00000542710		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-intron	ENST00000393346	ENST00000543525		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
intron-3CDS	ENST00000528398	ENST00000328257		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
intron-3CDS	ENST00000528398	ENST00000398427		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
intron-3UTR	ENST00000528398	ENST00000542710		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
intron-intron	ENST00000528398	ENST00000543525		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000356360	ENST00000328257		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
Frame-shit	ENST00000356360	ENST00000398427		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000356360	ENST00000542710		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-intron	ENST00000356360	ENST00000543525		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000528411	ENST00000328257		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000528411	ENST00000398427		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5UTR-3UTR	ENST00000528411	ENST00000542710		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5UTR-intron	ENST00000528411	ENST00000543525		TCGA	LD	LGG	TCGA-DU-A7T6-01A	PICALM	chr11	85779693	-	PPME1	chr11	73914773	+
5CDS-5UTR	ENST00000533486	ENST00000540367		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000533486	ENST00000376618		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000533486	ENST00000265641		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000533486	ENST00000539743		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000533486	ENST00000537756		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000533486	ENST00000538994		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000534141	ENST00000540367		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000534141	ENST00000376618		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000534141	ENST00000265641		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000534141	ENST00000539743		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000534141	ENST00000537756		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000534141	ENST00000538994		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000260056	ENST00000540367		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000260056	ENST00000376618		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000260056	ENST00000265641		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000260056	ENST00000539743		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000260056	ENST00000537756		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000260056	ENST00000538994		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000527633	ENST00000540367		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000527633	ENST00000376618		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000527633	ENST00000265641		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-5UTR	ENST00000527633	ENST00000539743		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000527633	ENST00000537756		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5CDS-intron	ENST00000527633	ENST00000538994		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000525117	ENST00000540367		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000525117	ENST00000376618		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000525117	ENST00000265641		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000525117	ENST00000539743		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000525117	ENST00000537756		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000525117	ENST00000538994		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000532548	ENST00000540367		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000532548	ENST00000376618		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000532548	ENST00000265641		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-5UTR	ENST00000532548	ENST00000539743		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000532548	ENST00000537756		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
intron-intron	ENST00000532548	ENST00000538994		TCGA	LD	LGG	TCGA-DU-A7T6-01A	RAB30	chr11	82698629	-	CPT1A	chr11	68582955	-
5UTR-3CDS	ENST00000291572	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
5UTR-3CDS	ENST00000291572	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
5UTR-3CDS	ENST00000398061	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
5UTR-3CDS	ENST00000398061	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
5UTR-3CDS	ENST00000327505	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
5UTR-3CDS	ENST00000327505	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000398063	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000398063	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000398058	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000398058	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000546158	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000546158	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000479117	ENST00000338793		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
intron-3CDS	ENST00000479117	ENST00000303728		TCGA	LD	LGG	TCGA-DU-A7T8-01A	AGPAT3	chr21	45323900	+	PRY	chrY	24650356	+
In-frame	ENST00000302640	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
In-frame	ENST00000354582	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
In-frame	ENST00000423119	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
In-frame	ENST00000456211	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
In-frame	ENST00000357086	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
intron-3CDS	ENST00000544951	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
In-frame	ENST00000443694	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
intron-3CDS	ENST00000463980	ENST00000256495		TCGA	LD	LGG	TCGA-DU-A7TA-01A	ITPR1	chr3	4704890	+	BHLHE40	chr3	5023077	+
intron-3CDS	ENST00000404260	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000404260	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000404260	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000404260	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000403625	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000403625	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000403625	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000403625	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000406374	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000406374	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000406374	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000406374	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000406039	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000406039	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000406039	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000406039	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000478569	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000478569	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000478569	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000478569	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000490016	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000490016	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000490016	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000490016	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000403666	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000403666	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000403666	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000403666	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000405643	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000405643	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000405643	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000405643	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000261569	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000261569	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000261569	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000261569	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000407621	ENST00000523111		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000407621	ENST00000521346		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000407621	ENST00000517630		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000407621	ENST00000520809		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MAST4	chr5	66255122	+	UBE2V2	chr8	48955593	+
In-frame	ENST00000392452	ENST00000409690		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MB21D2	chr3	192635419	-	CEP19	chr3	196434783	-
In-frame	ENST00000392452	ENST00000399942		TCGA	LD	LGG	TCGA-DU-A7TA-01A	MB21D2	chr3	192635419	-	CEP19	chr3	196434783	-
intron-3CDS	ENST00000559624	ENST00000319622		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559624	ENST00000565184		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559624	ENST00000389093		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559624	ENST00000335181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559624	ENST00000568883		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559624	ENST00000449901		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559624	ENST00000565154		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559624	ENST00000568459		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000382727	ENST00000319622		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000382727	ENST00000565184		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000382727	ENST00000389093		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000382727	ENST00000335181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000382727	ENST00000568883		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000382727	ENST00000449901		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000382727	ENST00000565154		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000382727	ENST00000568459		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000263791	ENST00000319622		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000263791	ENST00000565184		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000263791	ENST00000389093		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
In-frame	ENST00000263791	ENST00000335181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000263791	ENST00000568883		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000263791	ENST00000449901		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000263791	ENST00000565154		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5CDS-intron	ENST00000263791	ENST00000568459		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000560648	ENST00000319622		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000560648	ENST00000565184		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000560648	ENST00000389093		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000560648	ENST00000335181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000560648	ENST00000568883		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000560648	ENST00000449901		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000560648	ENST00000565154		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000560648	ENST00000568459		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559311	ENST00000319622		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559311	ENST00000565184		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559311	ENST00000389093		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-3CDS	ENST00000559311	ENST00000335181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559311	ENST00000568883		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559311	ENST00000449901		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559311	ENST00000565154		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
intron-intron	ENST00000559311	ENST00000568459		TCGA	LD	LGG	TCGA-DU-A7TC-01A	EIF2AK4	chr15	40301931	+	PKM	chr15	72502819	-
5UTR-5UTR	ENST00000403668	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000403668	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000403668	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000403668	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000403668	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000444075	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000444075	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000444075	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000444075	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000444075	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000287701	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000287701	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000287701	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000287701	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000287701	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000558662	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000558662	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000558662	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000558662	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000558662	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000523613	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000523613	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000523613	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000523613	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000523613	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000397358	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000397358	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000397358	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000397358	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000397358	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000519047	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000519047	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000519047	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000519047	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
5UTR-5UTR	ENST00000519047	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000355231	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000355231	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000355231	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000355231	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000355231	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000524238	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000524238	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000524238	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000524238	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000524238	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000517386	ENST00000316403		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000517386	ENST00000546343		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000517386	ENST00000560366		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000517386	ENST00000405140		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
intron-5UTR	ENST00000517386	ENST00000523500		TCGA	LD	LGG	TCGA-DU-A7TC-01A	HMBOX1	chr8	28748195	+	CLU	chr8	27468117	-
In-frame	ENST00000438423	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000438423	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000267811	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000267811	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000452095	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000452095	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000333725	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000333725	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000557843	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000557843	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
intron-3CDS	ENST00000560764	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
intron-3CDS	ENST00000560764	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000543579	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000543579	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000537840	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000537840	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000343827	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000343827	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000559710	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000559710	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000559703	ENST00000359440		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
In-frame	ENST00000559703	ENST00000558726		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TCF12	chr15	57555472	+	TMC3	chr15	81660669	-
5CDS-intron	ENST00000359440	ENST00000538348		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000359440	ENST00000451195		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000359440	ENST00000304177		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000359440	ENST00000513601		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000359440	ENST00000565712		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000558726	ENST00000538348		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000558726	ENST00000451195		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000558726	ENST00000304177		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000558726	ENST00000513601		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
5CDS-intron	ENST00000558726	ENST00000565712		TCGA	LD	LGG	TCGA-DU-A7TC-01A	TMC3	chr15	81630996	-	C15orf40	chr15	83660800	-
intron-3CDS	ENST00000232165	ENST00000261839		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000232165	ENST00000443683		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000232165	ENST00000541028		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000438097	ENST00000261839		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000438097	ENST00000443683		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000438097	ENST00000541028		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000566215	ENST00000261839		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000566215	ENST00000443683		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000566215	ENST00000541028		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000428984	ENST00000261839		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000428984	ENST00000443683		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000428984	ENST00000541028		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-3CDS	ENST00000397954	ENST00000261839		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000397954	ENST00000443683		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
intron-intron	ENST00000397954	ENST00000541028		TCGA	LD	LGG	TCGA-DU-A7TC-01A	UBE3A	chr15	25665803	-	MYO5C	chr15	52500840	-
Frame-shit	ENST00000318006	ENST00000454181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
In-frame	ENST00000318006	ENST00000558126		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
Frame-shit	ENST00000318006	ENST00000267838		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
Frame-shit	ENST00000318006	ENST00000560491		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
Frame-shit	ENST00000348544	ENST00000454181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
In-frame	ENST00000348544	ENST00000558126		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
Frame-shit	ENST00000348544	ENST00000267838		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
Frame-shit	ENST00000348544	ENST00000560491		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
5UTR-3CDS	ENST00000568357	ENST00000454181		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
5UTR-3CDS	ENST00000568357	ENST00000558126		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
5UTR-3CDS	ENST00000568357	ENST00000267838		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
5UTR-3CDS	ENST00000568357	ENST00000560491		TCGA	LD	LGG	TCGA-DU-A7TC-01A	VPS39	chr15	42492094	-	LYSMD2	chr15	52017188	-
intron-3CDS	ENST00000341217	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000341217	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000341217	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000341217	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000581407	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000581407	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000581407	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000581407	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000582266	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000582266	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000582266	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000582266	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000452648	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000452648	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000452648	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000452648	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000582059	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000582059	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000582059	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000582059	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000583953	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000583953	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-intron	ENST00000583953	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-5UTR	ENST00000583953	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000577682	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000577682	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-intron	ENST00000577682	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-5UTR	ENST00000577682	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000583522	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-3CDS	ENST00000583522	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-intron	ENST00000583522	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-5UTR	ENST00000583522	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000581381	ENST00000553458		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000581381	ENST00000350259		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000581381	ENST00000555126		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000581381	ENST00000556852		TCGA	LD	LGG	TCGA-DU-A7TD-01A	FAM222B	chr17	27161311	-	ALDH6A1	chr14	74541720	-
5UTR-intron	ENST00000338586	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338586	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338586	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338586	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338586	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338586	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000338515	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367171	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367169	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000539706	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000339876	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367170	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000360049	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000367172	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
5UTR-intron	ENST00000403080	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404076	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000401399	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000404907	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000513543	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000352432		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000343816		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000360273		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000383800		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000397077		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
intron-intron	ENST00000495396	ENST00000467702		TCGA	LD	LGG	TCGA-DU-A7TD-01A	NFASC	chr1	204797910	+	ATP2B2	chr1	203667285	+
Frame-shit	ENST00000262033	ENST00000381340		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000262033	ENST00000545902		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000262033	ENST00000242737		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5UTR-3CDS	ENST00000537473	ENST00000381340		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5UTR-intron	ENST00000537473	ENST00000545902		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5UTR-intron	ENST00000537473	ENST00000242737		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
Frame-shit	ENST00000414274	ENST00000381340		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000414274	ENST00000545902		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000414274	ENST00000242737		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
Frame-shit	ENST00000436399	ENST00000381340		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000436399	ENST00000545902		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000436399	ENST00000242737		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
Frame-shit	ENST00000448157	ENST00000381340		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000448157	ENST00000545902		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-intron	ENST00000448157	ENST00000242737		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
intron-3CDS	ENST00000456859	ENST00000381340		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
intron-intron	ENST00000456859	ENST00000545902		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
intron-intron	ENST00000456859	ENST00000242737		TCGA	LD	LGG	TCGA-DU-A7TI-01A	PTGES3	chr12	57066524	-	ITPR2	chr12	26703288	-
5CDS-5UTR	ENST00000449105	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000449105	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409636	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409636	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000378915	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000378915	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000608859	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000608859	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409328	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000409328	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000358367	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000358367	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000410076	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000410076	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
intron-5UTR	ENST00000498516	ENST00000313349		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
intron-5UTR	ENST00000498516	ENST00000476805		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	HNRNPLL	chr2	38818672	-	SERTAD2	chr2	64864009	-
Frame-shit	ENST00000272438	ENST00000409068		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
Frame-shit	ENST00000272438	ENST00000409085		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
Frame-shit	ENST00000272438	ENST00000406297		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
5CDS-intron	ENST00000272438	ENST00000470281		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
5UTR-3CDS	ENST00000466731	ENST00000409068		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
5UTR-3CDS	ENST00000466731	ENST00000409085		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
5UTR-3CDS	ENST00000466731	ENST00000406297		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
5UTR-intron	ENST00000466731	ENST00000470281		TCGA	LD	LGG	TCGA-DU-A7TJ-01A	TEX261	chr2	71216879	-	AAK1	chr2	69784110	-
intron-3CDS	ENST00000351960	ENST00000312293		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
intron-3CDS	ENST00000351960	ENST00000393681		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
intron-3CDS	ENST00000351960	ENST00000393679		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
intron-3CDS	ENST00000351960	ENST00000393676		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000358965	ENST00000312293		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000358965	ENST00000393681		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000358965	ENST00000393679		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000358965	ENST00000393676		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000393695	ENST00000312293		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000393695	ENST00000393681		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000393695	ENST00000393679		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000393695	ENST00000393676		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000543450	ENST00000312293		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000543450	ENST00000393681		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000543450	ENST00000393679		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5UTR-3CDS	ENST00000543450	ENST00000393676		TCGA	LD	LGG	TCGA-E1-5302-01A	NUMA1	chr11	71791504	-	FOLR1	chr11	71906315	+
5CDS-intron	ENST00000282406	ENST00000556818		TCGA	LD	LGG	TCGA-E1-5302-01A	PLEKHH2	chr2	43937714	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000282406	ENST00000554015		TCGA	LD	LGG	TCGA-E1-5302-01A	PLEKHH2	chr2	43937714	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000282406	ENST00000394712		TCGA	LD	LGG	TCGA-E1-5302-01A	PLEKHH2	chr2	43937714	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000282406	ENST00000358738		TCGA	LD	LGG	TCGA-E1-5302-01A	PLEKHH2	chr2	43937714	+	ZBTB1	chr14	64988205	+
In-frame	ENST00000262061	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000262061	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
5UTR-3CDS	ENST00000549043	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
5UTR-3CDS	ENST00000549043	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
In-frame	ENST00000552218	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000552218	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
In-frame	ENST00000553231	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000553231	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
In-frame	ENST00000552362	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000552362	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
In-frame	ENST00000455864	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000455864	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
5UTR-3CDS	ENST00000416254	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
5UTR-3CDS	ENST00000416254	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
In-frame	ENST00000549116	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000549116	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
In-frame	ENST00000551779	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
Frame-shit	ENST00000551779	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
intron-3CDS	ENST00000548281	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
intron-3CDS	ENST00000548281	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
intron-3CDS	ENST00000548753	ENST00000547431		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
intron-3CDS	ENST00000548753	ENST00000257905		TCGA	LD	LGG	TCGA-E1-5304-01A	COPZ1	chr12	54718965	+	PPP1R1A	chr12	54974834	-
5CDS-3UTR	ENST00000379882	ENST00000468573		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-intron	ENST00000379882	ENST00000255380		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-3UTR	ENST00000379868	ENST00000468573		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-intron	ENST00000379868	ENST00000255380		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-3UTR	ENST00000379883	ENST00000468573		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-intron	ENST00000379883	ENST00000255380		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
intron-3UTR	ENST00000545044	ENST00000468573		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
intron-intron	ENST00000545044	ENST00000255380		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-3UTR	ENST00000542096	ENST00000468573		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-intron	ENST00000542096	ENST00000255380		TCGA	LD	LGG	TCGA-E1-5304-01A	DDX58	chr9	32466288	-	CHRM3	chr1	240049389	+
5CDS-5UTR	ENST00000540275	ENST00000392491		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000607474		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000368452		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000368448		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000392490		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000258014		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000354275		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
5CDS-intron	ENST00000540275	ENST00000368446		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-5UTR	ENST00000452085	ENST00000392491		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000607474		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000368452		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000368448		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000392490		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000258014		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000354275		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000452085	ENST00000368446		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-5UTR	ENST00000537543	ENST00000392491		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000607474		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000368452		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000368448		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000392490		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000258014		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000354275		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000537543	ENST00000368446		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-5UTR	ENST00000331677	ENST00000392491		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000607474		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000368452		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000368448		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000392490		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000258014		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000354275		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000331677	ENST00000368446		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-5UTR	ENST00000359564	ENST00000392491		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000607474		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000368452		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000368448		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000392490		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000258014		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000354275		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000359564	ENST00000368446		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-5UTR	ENST00000606265	ENST00000392491		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000607474		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000368452		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000368448		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000392490		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000258014		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000354275		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
intron-intron	ENST00000606265	ENST00000368446		TCGA	LD	LGG	TCGA-E1-5304-01A	DSE	chr6	116580130	+	PKIB	chr6	122907066	+
In-frame	ENST00000366919	ENST00000338882		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
5CDS-intron	ENST00000366919	ENST00000490043		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
In-frame	ENST00000392142	ENST00000338882		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
5CDS-intron	ENST00000392142	ENST00000490043		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
In-frame	ENST00000348824	ENST00000338882		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
5CDS-intron	ENST00000348824	ENST00000490043		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
In-frame	ENST00000366920	ENST00000338882		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
5CDS-intron	ENST00000366920	ENST00000490043		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
intron-3CDS	ENST00000446500	ENST00000338882		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
intron-intron	ENST00000446500	ENST00000490043		TCGA	LD	LGG	TCGA-E1-5304-01A	MAP3K4	chr6	161471011	+	METTL24	chr6	110636684	-
5CDS-5UTR	ENST00000400546	ENST00000428301		TCGA	LD	LGG	TCGA-E1-5304-01A	NCAM2	chr21	22370936	+	CYP4F29P	chr21	15218462	-
5CDS-5UTR	ENST00000284894	ENST00000428301		TCGA	LD	LGG	TCGA-E1-5304-01A	NCAM2	chr21	22370936	+	CYP4F29P	chr21	15218462	-
intron-5UTR	ENST00000535285	ENST00000428301		TCGA	LD	LGG	TCGA-E1-5304-01A	NCAM2	chr21	22370936	+	CYP4F29P	chr21	15218462	-
intron-5UTR	ENST00000486367	ENST00000428301		TCGA	LD	LGG	TCGA-E1-5304-01A	NCAM2	chr21	22370936	+	CYP4F29P	chr21	15218462	-
In-frame	ENST00000366898	ENST00000402676		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366898	ENST00000253332		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366898	ENST00000354675		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366898	ENST00000359755		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366898	ENST00000490177		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366897	ENST00000402676		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366897	ENST00000253332		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366897	ENST00000354675		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366897	ENST00000359755		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366897	ENST00000490177		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366896	ENST00000402676		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366896	ENST00000253332		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366896	ENST00000354675		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366896	ENST00000359755		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366896	ENST00000490177		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000366894	ENST00000402676		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000366894	ENST00000253332		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000366894	ENST00000354675		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000366894	ENST00000359755		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000366894	ENST00000490177		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000338468	ENST00000402676		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000338468	ENST00000253332		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000338468	ENST00000354675		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000338468	ENST00000359755		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000338468	ENST00000490177		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366892	ENST00000402676		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000366892	ENST00000253332		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366892	ENST00000354675		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366892	ENST00000359755		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
5CDS-intron	ENST00000366892	ENST00000490177		TCGA	LD	LGG	TCGA-E1-5304-01A	PARK2	chr6	163148694	-	AKAP12	chr6	151626882	+
In-frame	ENST00000260867	ENST00000401604		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000260867	ENST00000373985		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000260867	ENST00000373980		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
5CDS-intron	ENST00000260867	ENST00000373975		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
intron-3CDS	ENST00000485812	ENST00000401604		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
intron-3CDS	ENST00000485812	ENST00000373985		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
intron-3CDS	ENST00000485812	ENST00000373980		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
intron-intron	ENST00000485812	ENST00000373975		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000374064	ENST00000401604		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000374064	ENST00000373985		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000374064	ENST00000373980		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
5CDS-intron	ENST00000374064	ENST00000373975		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000374065	ENST00000401604		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000374065	ENST00000373985		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000374065	ENST00000373980		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
5CDS-intron	ENST00000374065	ENST00000373975		TCGA	LD	LGG	TCGA-E1-5304-01A	TIMM23	chr10	51606988	+	PRKG1	chr10	53564345	+
In-frame	ENST00000448841	ENST00000260746		TCGA	LD	LGG	TCGA-E1-5304-01A	WBP1L	chr10	104503900	+	ARL3	chr10	104465246	-
intron-3CDS	ENST00000369889	ENST00000260746		TCGA	LD	LGG	TCGA-E1-5304-01A	WBP1L	chr10	104503900	+	ARL3	chr10	104465246	-
5UTR-3CDS	ENST00000298299	ENST00000430479		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000399357		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000420159		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000343495		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000242066		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000405192		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000405358		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000403527		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000405218		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000298299	ENST00000403685		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-intron	ENST00000298299	ENST00000476720		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF22	chr10	45496426	+	ETV1	chr7	13949325	-
5UTR-3CDS	ENST00000356725	ENST00000254260		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF790	chr19	37329239	-	RHPN2	chr19	33535270	-
5UTR-5UTR	ENST00000356725	ENST00000400226		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF790	chr19	37329239	-	RHPN2	chr19	33535270	-
5UTR-intron	ENST00000356725	ENST00000588683		TCGA	LD	LGG	TCGA-E1-5304-01A	ZNF790	chr19	37329239	-	RHPN2	chr19	33535270	-
intron-intron	ENST00000376959	ENST00000332854		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
intron-intron	ENST00000376959	ENST00000597864		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
5UTR-intron	ENST00000391818	ENST00000332854		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
5UTR-intron	ENST00000391818	ENST00000597864		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
5UTR-intron	ENST00000474951	ENST00000332854		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
5UTR-intron	ENST00000474951	ENST00000597864		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
intron-intron	ENST00000477616	ENST00000332854		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
intron-intron	ENST00000477616	ENST00000597864		TCGA	LD	LGG	TCGA-E1-5305-01A	KCNC3	chr19	50836726	-	ZNF530	chr19	58123871	+
5UTR-3CDS	ENST00000358502	ENST00000329286		TCGA	LD	LGG	TCGA-E1-5318-01A	APOL2	chr22	36635487	-	RAB12	chr18	8633187	+
5UTR-3CDS	ENST00000249066	ENST00000329286		TCGA	LD	LGG	TCGA-E1-5318-01A	APOL2	chr22	36635487	-	RAB12	chr18	8633187	+
Frame-shit	ENST00000451256	ENST00000329286		TCGA	LD	LGG	TCGA-E1-5318-01A	APOL2	chr22	36635487	-	RAB12	chr18	8633187	+
intron-3CDS	ENST00000476579	ENST00000329286		TCGA	LD	LGG	TCGA-E1-5318-01A	APOL2	chr22	36635487	-	RAB12	chr18	8633187	+
5CDS-5UTR	ENST00000331872	ENST00000382582		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000355994		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000397875		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000397866		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000397865		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000527041		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-intron	ENST00000331872	ENST00000359645		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000528160		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000397869		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000354542		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000526111		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000580402		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000579129		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000578193		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000397863		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000397860		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000331872	ENST00000487778		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000382582		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000355994		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000397875		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000397866		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000397865		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000527041		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-intron	ENST00000417584	ENST00000359645		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000528160		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000397869		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000354542		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000526111		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000580402		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000579129		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000578193		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000397863		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000397860		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000417584	ENST00000487778		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000382582		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000355994		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000397875		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000397866		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000397865		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000527041		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-intron	ENST00000311223	ENST00000359645		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000528160		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000397869		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000354542		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000526111		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000580402		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000579129		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000578193		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000397863		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000397860		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000311223	ENST00000487778		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000382582		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000355994		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000397875		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000397866		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000397865		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000527041		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-intron	ENST00000491322	ENST00000359645		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000528160		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000397869		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000354542		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000526111		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000580402		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000579129		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000578193		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000397863		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000397860		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000491322	ENST00000487778		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000382582		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000355994		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000397875		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000397866		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000397865		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000527041		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-intron	ENST00000339526	ENST00000359645		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000528160		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000397869		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000354542		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000526111		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000580402		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000579129		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000578193		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000397863		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000397860		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000339526	ENST00000487778		TCGA	LD	LGG	TCGA-E1-5319-01A	GLUL	chr1	182356266	-	MBP	chr18	74729011	-
In-frame	ENST00000415912	ENST00000264211		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
In-frame	ENST00000415912	ENST00000400422		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
In-frame	ENST00000415912	ENST00000602326		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
In-frame	ENST00000415912	ENST00000374935		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
In-frame	ENST00000415912	ENST00000374937		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
In-frame	ENST00000415912	ENST00000536266		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
5CDS-intron	ENST00000415912	ENST00000374933		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
5CDS-intron	ENST00000415912	ENST00000544689		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
5CDS-intron	ENST00000415912	ENST00000356916		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
5CDS-intron	ENST00000415912	ENST00000374927		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
5CDS-intron	ENST00000415912	ENST00000537738		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000357071	ENST00000264211		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000357071	ENST00000400422		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000357071	ENST00000602326		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000357071	ENST00000374935		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000357071	ENST00000374937		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000357071	ENST00000536266		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000357071	ENST00000374933		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000357071	ENST00000544689		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000357071	ENST00000356916		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000357071	ENST00000374927		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000357071	ENST00000537738		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000374893	ENST00000264211		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000374893	ENST00000400422		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000374893	ENST00000602326		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000374893	ENST00000374935		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000374893	ENST00000374937		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000374893	ENST00000536266		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000374893	ENST00000374933		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000374893	ENST00000544689		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000374893	ENST00000356916		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000374893	ENST00000374927		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000374893	ENST00000537738		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000436918	ENST00000264211		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000436918	ENST00000400422		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000436918	ENST00000602326		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000436918	ENST00000374935		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000436918	ENST00000374937		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000436918	ENST00000536266		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000436918	ENST00000374933		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000436918	ENST00000544689		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000436918	ENST00000356916		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000436918	ENST00000374927		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000436918	ENST00000537738		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000264205	ENST00000264211		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000264205	ENST00000400422		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000264205	ENST00000602326		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000264205	ENST00000374935		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000264205	ENST00000374937		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000264205	ENST00000536266		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000264205	ENST00000374933		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000264205	ENST00000544689		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000264205	ENST00000356916		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000264205	ENST00000374927		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000264205	ENST00000537738		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000528294	ENST00000264211		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000528294	ENST00000400422		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000528294	ENST00000602326		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000528294	ENST00000374935		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000528294	ENST00000374937		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000528294	ENST00000536266		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000528294	ENST00000374933		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000528294	ENST00000544689		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000528294	ENST00000356916		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000528294	ENST00000374927		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-intron	ENST00000528294	ENST00000537738		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ECE1	chr1	21671869	-	EIF4G3	chr1	21144031	-
intron-3CDS	ENST00000550078	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZBED6	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000550078	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZBED6	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000550078	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZBED6	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000550078	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZBED6	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000550078	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZBED6	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-intron	ENST00000550078	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZBED6	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367214	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367214	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367214	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367214	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367214	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000367214	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367212	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367212	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367212	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367212	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367212	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000367212	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000332127	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000332127	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000332127	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000332127	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000332127	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000332127	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000545588	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000545588	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000545588	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000545588	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000545588	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000545588	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367210	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367210	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367210	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367210	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
Frame-shit	ENST00000367210	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
5CDS-intron	ENST00000367210	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000466470	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000466470	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000466470	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000466470	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-3CDS	ENST00000466470	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
intron-intron	ENST00000466470	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YD-01A	ZC3H11A	chr1	203787817	+	FIP1L1	chr4	54292039	+
In-frame	ENST00000263102	ENST00000299299		TCGA	LD	LGG	TCGA-E1-A7YH-01A	CCDC6	chr10	61665880	-	PCBD1	chr10	72645686	-
5CDS-5UTR	ENST00000263102	ENST00000493228		TCGA	LD	LGG	TCGA-E1-A7YH-01A	CCDC6	chr10	61665880	-	PCBD1	chr10	72645686	-
5UTR-intron	ENST00000312561	ENST00000514921		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000274897		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000370877		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000509997		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000370876		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000511744		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000358276		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5UTR-intron	ENST00000312561	ENST00000502396		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000514921		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000274897		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000370877		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000509997		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000370876		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000511744		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000358276		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
3UTR-intron	ENST00000535596	ENST00000502396		TCGA	LD	LGG	TCGA-E1-A7YI-01A	KIAA1551	chr12	32113805	+	MLIP	chr6	54095512	+
5CDS-intron	ENST00000257290	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YI-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5UTR-3UTR	ENST00000371460	ENST00000451810		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000371460	ENST00000448559		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000371460	ENST00000448433		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000371460	ENST00000373170		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000371459	ENST00000451810		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000371459	ENST00000448559		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000371459	ENST00000448433		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000371459	ENST00000373170		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371461	ENST00000451810		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371461	ENST00000448559		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371461	ENST00000448433		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371461	ENST00000373170		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000306867	ENST00000451810		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000306867	ENST00000448559		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000306867	ENST00000448433		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000306867	ENST00000373170		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371458	ENST00000451810		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371458	ENST00000448559		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371458	ENST00000448433		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
intron-3UTR	ENST00000371458	ENST00000373170		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000459689	ENST00000451810		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000459689	ENST00000448559		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000459689	ENST00000448433		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
5UTR-3UTR	ENST00000459689	ENST00000373170		TCGA	LD	LGG	TCGA-E1-A7YI-01A	SUPT3H	chr6	45332938	-	TDRG1	chr6	40347021	+
Frame-shit	ENST00000455089	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000342916	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000344576	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000420316	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
Frame-shit	ENST00000275493	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000442591	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000463948	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
Frame-shit	ENST00000454757	ENST00000297001		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	EGFR	chr7	55268106	+	C7orf72	chr7	50143910	+
5CDS-intron	ENST00000255882	ENST00000398465		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000255882	ENST00000248948		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000572273	ENST00000398465		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000572273	ENST00000248948		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
intron-intron	ENST00000414196	ENST00000398465		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
intron-intron	ENST00000414196	ENST00000248948		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
5UTR-intron	ENST00000466162	ENST00000398465		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
5UTR-intron	ENST00000466162	ENST00000248948		TCGA	LD	LGG	TCGA-E1-A7YJ-01A	PI4KA	chr22	21147481	-	VPREB3	chr22	24095385	-
In-frame	ENST00000257904	ENST00000537081		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
In-frame	ENST00000257904	ENST00000257861		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
5CDS-intron	ENST00000257904	ENST00000550083		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-3CDS	ENST00000312990	ENST00000537081		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-3CDS	ENST00000312990	ENST00000257861		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-intron	ENST00000312990	ENST00000550083		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-3CDS	ENST00000549606	ENST00000537081		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-3CDS	ENST00000549606	ENST00000257861		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-intron	ENST00000549606	ENST00000550083		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
Frame-shit	ENST00000540325	ENST00000537081		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
Frame-shit	ENST00000540325	ENST00000257861		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
5CDS-intron	ENST00000540325	ENST00000550083		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-3CDS	ENST00000551888	ENST00000537081		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-3CDS	ENST00000551888	ENST00000257861		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
intron-intron	ENST00000551888	ENST00000550083		TCGA	LD	LGG	TCGA-E1-A7YL-01A	CDK4	chr12	58144706	-	AVIL	chr12	58193703	-
5UTR-3CDS	ENST00000598312	ENST00000282041		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF329	chr19	58662119	-	EPG5	chr18	43532609	-
5UTR-intron	ENST00000598312	ENST00000585906		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF329	chr19	58662119	-	EPG5	chr18	43532609	-
intron-3CDS	ENST00000358067	ENST00000282041		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF329	chr19	58662119	-	EPG5	chr18	43532609	-
intron-intron	ENST00000358067	ENST00000585906		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF329	chr19	58662119	-	EPG5	chr18	43532609	-
intron-5UTR	ENST00000537645	ENST00000388968		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57792204	+	HSPD1	chr2	198363574	-
intron-5UTR	ENST00000537645	ENST00000345042		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57792204	+	HSPD1	chr2	198363574	-
intron-5UTR	ENST00000537645	ENST00000544407		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57792204	+	HSPD1	chr2	198363574	-
5CDS-5UTR	ENST00000360338	ENST00000388968		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57792204	+	HSPD1	chr2	198363574	-
5CDS-5UTR	ENST00000360338	ENST00000345042		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57792204	+	HSPD1	chr2	198363574	-
5CDS-5UTR	ENST00000360338	ENST00000544407		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZNF460	chr19	57792204	+	HSPD1	chr2	198363574	-
intron-3CDS	ENST00000240727	ENST00000426216		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000240727	ENST00000307671		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000240727	ENST00000586722		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000240727	ENST00000591464		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000240727	ENST00000458297		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000240727	ENST00000543761		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
5UTR-3CDS	ENST00000601144	ENST00000426216		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
5UTR-3CDS	ENST00000601144	ENST00000307671		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
5UTR-intron	ENST00000601144	ENST00000586722		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
5UTR-intron	ENST00000601144	ENST00000591464		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
5UTR-intron	ENST00000601144	ENST00000458297		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
5UTR-intron	ENST00000601144	ENST00000543761		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000421612	ENST00000426216		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000421612	ENST00000307671		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000421612	ENST00000586722		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000421612	ENST00000591464		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000421612	ENST00000458297		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000421612	ENST00000543761		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000600404	ENST00000426216		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000600404	ENST00000307671		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000600404	ENST00000586722		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000600404	ENST00000591464		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000600404	ENST00000458297		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000600404	ENST00000543761		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000595944	ENST00000426216		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000595944	ENST00000307671		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000595944	ENST00000586722		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000595944	ENST00000591464		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000595944	ENST00000458297		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000595944	ENST00000543761		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000594567	ENST00000426216		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-3CDS	ENST00000594567	ENST00000307671		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000594567	ENST00000586722		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000594567	ENST00000591464		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000594567	ENST00000458297		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-intron	ENST00000594567	ENST00000543761		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58609541	-	ATP9B	chr18	77063604	+
intron-5UTR	ENST00000240727	ENST00000427624		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000240727	ENST00000597582		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000601144	ENST00000427624		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000601144	ENST00000597582		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000421612	ENST00000427624		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000421612	ENST00000597582		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000600404	ENST00000427624		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000600404	ENST00000597582		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000595944	ENST00000427624		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000595944	ENST00000597582		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000594567	ENST00000427624		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000594567	ENST00000597582		TCGA	LD	LGG	TCGA-E1-A7YL-01A	ZSCAN18	chr19	58629715	-	ZNF837	chr19	58881295	-
5CDS-intron	ENST00000257290	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
5CDS-intron	ENST00000257290	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000507166		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000358575		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000337488		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000507922		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000306932		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
intron-intron	ENST00000508170	ENST00000510668		TCGA	LD	LGG	TCGA-E1-A7YM-01A	PDGFRA	chr4	55156721	+	FIP1L1	chr4	54310215	+
In-frame	ENST00000254770	ENST00000355666		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
In-frame	ENST00000254770	ENST00000399017		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
In-frame	ENST00000254770	ENST00000354749		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
5CDS-3UTR	ENST00000254770	ENST00000479930		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
5CDS-intron	ENST00000254770	ENST00000540756		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
5CDS-intron	ENST00000254770	ENST00000399010		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
intron-3CDS	ENST00000486376	ENST00000355666		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
intron-3CDS	ENST00000486376	ENST00000399017		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
intron-3CDS	ENST00000486376	ENST00000354749		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
intron-3UTR	ENST00000486376	ENST00000479930		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
intron-intron	ENST00000486376	ENST00000540756		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
intron-intron	ENST00000486376	ENST00000399010		TCGA	LD	LGG	TCGA-E1-A7YQ-01A	LANCL2	chr7	55433922	+	TTC3	chr21	38544897	+
5CDS-intron	ENST00000296149	ENST00000366321		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
5CDS-intron	ENST00000296149	ENST00000601343		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
intron-intron	ENST00000446787	ENST00000366321		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
intron-intron	ENST00000446787	ENST00000601343		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
5UTR-intron	ENST00000439305	ENST00000366321		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
5UTR-intron	ENST00000439305	ENST00000601343		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
intron-intron	ENST00000460502	ENST00000366321		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
intron-intron	ENST00000460502	ENST00000601343		TCGA	LD	LGG	TCGA-E1-A7YU-01A	ELP6	chr3	47551674	-	RBMS3-AS2	chr3	29656723	-
5CDS-5UTR	ENST00000283629	ENST00000383737		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000395734		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000426837		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000360240		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000439356		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000264724		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000420772		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000441748		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283629	ENST00000462206		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283629	ENST00000434267		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000383737		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000395734		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000426837		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000360240		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000439356		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000264724		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000420772		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000441748		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000447368	ENST00000462206		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000447368	ENST00000434267		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000383737		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000395734		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000426837		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000360240		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000439356		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000264724		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000420772		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000441748		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-intron	ENST00000283628	ENST00000462206		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
5CDS-5UTR	ENST00000283628	ENST00000434267		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000383737		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000395734		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000426837		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000360240		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000439356		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000264724		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000420772		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000441748		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-intron	ENST00000486388	ENST00000462206		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
intron-5UTR	ENST00000486388	ENST00000434267		TCGA	LD	LGG	TCGA-E1-A7YU-01A	UBP1	chr3	33467082	-	MAP4	chr3	48040369	-
In-frame	ENST00000262027	ENST00000552285		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000262027	ENST00000315970		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000262027	ENST00000439210		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000262027	ENST00000389146		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000413095		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000551035		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000435406		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000257966		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000389142		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000315473	ENST00000552285		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000315473	ENST00000315970		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000315473	ENST00000439210		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
In-frame	ENST00000315473	ENST00000389146		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000413095		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000551035		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000435406		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000257966		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000389142		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000447721	ENST00000552285		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000447721	ENST00000315970		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000447721	ENST00000439210		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000447721	ENST00000389146		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000447721	ENST00000413095		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000447721	ENST00000551035		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000447721	ENST00000435406		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000447721	ENST00000257966		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000447721	ENST00000389142		TCGA	LD	LGG	TCGA-E1-A7YV-01A	MARS	chr12	57894305	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000360149	ENST00000396037		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000360149	ENST00000539510		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-5UTR	ENST00000360149	ENST00000536558		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000360149	ENST00000404299		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000360149	ENST00000381424		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000536311	ENST00000396037		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000536311	ENST00000539510		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-5UTR	ENST00000536311	ENST00000536558		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000536311	ENST00000404299		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000536311	ENST00000381424		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000328439	ENST00000396037		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000328439	ENST00000539510		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-5UTR	ENST00000328439	ENST00000536558		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000328439	ENST00000404299		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-intron	ENST00000328439	ENST00000381424		TCGA	LD	LGG	TCGA-E1-A7YW-01A	MYT1	chr20	62859324	+	ST8SIA1	chr12	22507717	-
5CDS-5UTR	ENST00000392038	ENST00000391965		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000392038	ENST00000525771		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000392038	ENST00000533118		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000392038	ENST00000528387		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000392038	ENST00000529930		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000392038	ENST00000336564		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000391965		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000525771		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000533118		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000528387		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000529930		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000424901	ENST00000336564		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000391965		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000525771		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000533118		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000528387		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000529930		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-5UTR	ENST00000311278	ENST00000336564		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000391965		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000525771		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000533118		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000528387		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000529930		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000579047	ENST00000336564		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000391965		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000525771		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000533118		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000528387		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000529930		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
intron-5UTR	ENST00000581582	ENST00000336564		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	AKT2	chr19	40771129	-	ZNF576	chr19	44101246	+
5CDS-intron	ENST00000357236	ENST00000470422		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000357236	ENST00000246043		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000357236	ENST00000377813		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000357236	ENST00000377807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000357236	ENST00000360807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-5UTR	ENST00000357236	ENST00000455029		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000329494	ENST00000470422		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000329494	ENST00000246043		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000329494	ENST00000377813		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000329494	ENST00000377807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000329494	ENST00000360807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-5UTR	ENST00000329494	ENST00000455029		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000262547	ENST00000470422		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000262547	ENST00000246043		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000262547	ENST00000377813		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000262547	ENST00000377807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000262547	ENST00000360807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-5UTR	ENST00000262547	ENST00000455029		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5UTR-intron	ENST00000487128	ENST00000470422		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5UTR-intron	ENST00000487128	ENST00000246043		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5UTR-intron	ENST00000487128	ENST00000377813		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5UTR-intron	ENST00000487128	ENST00000377807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5UTR-intron	ENST00000487128	ENST00000360807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5UTR-5UTR	ENST00000487128	ENST00000455029		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000358866	ENST00000470422		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000358866	ENST00000246043		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000358866	ENST00000377813		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000358866	ENST00000377807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-intron	ENST00000358866	ENST00000360807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-5UTR	ENST00000358866	ENST00000455029		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	DZANK1	chr20	18393290	-	RRBP1	chr20	17623772	-
5CDS-3UTR	ENST00000373625	ENST00000487305		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
5CDS-3UTR	ENST00000373625	ENST00000336294		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
5CDS-3UTR	ENST00000373625	ENST00000456834		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
5CDS-5UTR	ENST00000373625	ENST00000373634		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
5CDS-5UTR	ENST00000373625	ENST00000427288		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000537234	ENST00000487305		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000537234	ENST00000336294		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000537234	ENST00000456834		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-5UTR	ENST00000537234	ENST00000373634		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-5UTR	ENST00000537234	ENST00000427288		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000469790	ENST00000487305		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000469790	ENST00000336294		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000469790	ENST00000456834		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-5UTR	ENST00000469790	ENST00000373634		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-5UTR	ENST00000469790	ENST00000427288		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000545542	ENST00000487305		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000545542	ENST00000336294		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-3UTR	ENST00000545542	ENST00000456834		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-5UTR	ENST00000545542	ENST00000373634		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
intron-5UTR	ENST00000545542	ENST00000427288		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32557276	+
5CDS-5UTR	ENST00000524717	ENST00000434074		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000312040		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000451945		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000529655		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-intron	ENST00000524717	ENST00000530500		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000526508		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000524625		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000359513		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-5UTR	ENST00000524717	ENST00000528494		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
5CDS-intron	ENST00000524717	ENST00000526485		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	MAML2	chr11	95825056	-	ATG13	chr11	46665829	+
In-frame	ENST00000252891	ENST00000331105		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	NUMBL	chr19	41192816	-	CYP2F1	chr19	41626308	+
intron-3CDS	ENST00000598779	ENST00000331105		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	NUMBL	chr19	41192816	-	CYP2F1	chr19	41626308	+
intron-3CDS	ENST00000540131	ENST00000331105		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	NUMBL	chr19	41192816	-	CYP2F1	chr19	41626308	+
5UTR-3CDS	ENST00000599594	ENST00000331105		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	NUMBL	chr19	41192816	-	CYP2F1	chr19	41626308	+
5UTR-3CDS	ENST00000373896	ENST00000314485		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
5UTR-3CDS	ENST00000373896	ENST00000368086		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
5UTR-5UTR	ENST00000373896	ENST00000460351		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000419155	ENST00000314485		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000419155	ENST00000368086		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
intron-5UTR	ENST00000419155	ENST00000460351		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000487555	ENST00000314485		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000487555	ENST00000368086		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
intron-5UTR	ENST00000487555	ENST00000460351		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
5UTR-3CDS	ENST00000312189	ENST00000314485		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
5UTR-3CDS	ENST00000312189	ENST00000368086		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
5UTR-5UTR	ENST00000312189	ENST00000460351		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	PHF19	chr9	123639369	-	IGSF8	chr1	160065036	-
5CDS-intron	ENST00000535977	ENST00000423807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000535977	ENST00000419060		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000535977	ENST00000543175		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000535977	ENST00000429848		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000539661	ENST00000423807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000539661	ENST00000419060		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000539661	ENST00000543175		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000539661	ENST00000429848		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000538492	ENST00000423807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000538492	ENST00000419060		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000538492	ENST00000543175		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000538492	ENST00000429848		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000248139	ENST00000423807		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000248139	ENST00000419060		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000248139	ENST00000543175		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000248139	ENST00000429848		TCGA	LD	LGG	TCGA-E1-A7Z2-01A	RAB40C	chr16	668260	+	PTRH1	chr9	130457420	-
Frame-shit	ENST00000532982	ENST00000298992		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
Frame-shit	ENST00000532982	ENST00000435224		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
5CDS-5UTR	ENST00000532982	ENST00000530814		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
Frame-shit	ENST00000227451	ENST00000298992		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
Frame-shit	ENST00000227451	ENST00000435224		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
5CDS-5UTR	ENST00000227451	ENST00000530814		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
intron-3CDS	ENST00000531902	ENST00000298992		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
intron-3CDS	ENST00000531902	ENST00000435224		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
intron-5UTR	ENST00000531902	ENST00000530814		TCGA	LD	LGG	TCGA-FG-5963-01A	DTX4	chr11	58972219	+	ABTB2	chr11	34226236	-
Frame-shit	ENST00000395925	ENST00000257637		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
Frame-shit	ENST00000395925	ENST00000433078		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
5CDS-5UTR	ENST00000395925	ENST00000481425		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
5CDS-5UTR	ENST00000395925	ENST00000423734		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
5UTR-3CDS	ENST00000479210	ENST00000257637		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
5UTR-3CDS	ENST00000479210	ENST00000433078		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
5UTR-5UTR	ENST00000479210	ENST00000481425		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
5UTR-5UTR	ENST00000479210	ENST00000423734		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
intron-3CDS	ENST00000437480	ENST00000257637		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
intron-3CDS	ENST00000437480	ENST00000433078		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
intron-5UTR	ENST00000437480	ENST00000481425		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
intron-5UTR	ENST00000437480	ENST00000423734		TCGA	LD	LGG	TCGA-FG-5963-01A	GLI3	chr7	42063067	-	TMEM243	chr7	86828373	-
Frame-shit	ENST00000425792	ENST00000265362		TCGA	LD	LGG	TCGA-FG-5963-01A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
Frame-shit	ENST00000425792	ENST00000436949		TCGA	LD	LGG	TCGA-FG-5963-01A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
5CDS-intron	ENST00000425792	ENST00000471474		TCGA	LD	LGG	TCGA-FG-5963-01A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
Frame-shit	ENST00000396703	ENST00000265362		TCGA	LD	LGG	TCGA-FG-5963-01A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
Frame-shit	ENST00000396703	ENST00000436949		TCGA	LD	LGG	TCGA-FG-5963-01A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
5CDS-intron	ENST00000396703	ENST00000471474		TCGA	LD	LGG	TCGA-FG-5963-01A	UBE2E2	chr3	23258803	+	SEMA3A	chr7	83643667	-
intron-5UTR	ENST00000261168	ENST00000374706		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000261168	ENST00000265375		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000261168	ENST00000339497		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000261168	ENST00000374704		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-3UTR	ENST00000261168	ENST00000492478		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000543189	ENST00000374706		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000543189	ENST00000265375		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000543189	ENST00000339497		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000543189	ENST00000374704		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-3UTR	ENST00000543189	ENST00000492478		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000536444	ENST00000374706		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000536444	ENST00000265375		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000536444	ENST00000339497		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000536444	ENST00000374704		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-3UTR	ENST00000536444	ENST00000492478		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000544627	ENST00000374706		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000544627	ENST00000265375		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
5CDS-intron	ENST00000544627	ENST00000339497		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
5CDS-intron	ENST00000544627	ENST00000374704		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000544627	ENST00000492478		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
3UTR-5UTR	ENST00000541654	ENST00000374706		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
3UTR-5UTR	ENST00000541654	ENST00000265375		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
3UTR-intron	ENST00000541654	ENST00000339497		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
3UTR-intron	ENST00000541654	ENST00000374704		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
3UTR-3UTR	ENST00000541654	ENST00000492478		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000540793	ENST00000374706		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-5UTR	ENST00000540793	ENST00000265375		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000540793	ENST00000339497		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-intron	ENST00000540793	ENST00000374704		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
intron-3UTR	ENST00000540793	ENST00000492478		TCGA	LD	LGG	TCGA-FG-6691-01A	ATF7IP	chr12	14538334	+	CCNY	chr10	35772332	+
In-frame	ENST00000517671	ENST00000544301		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000517671	ENST00000224237		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
5CDS-intron	ENST00000517671	ENST00000485947		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000296930	ENST00000544301		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000296930	ENST00000224237		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
5CDS-intron	ENST00000296930	ENST00000485947		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000351986	ENST00000544301		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000351986	ENST00000224237		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
5CDS-intron	ENST00000351986	ENST00000485947		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000393820	ENST00000544301		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
In-frame	ENST00000393820	ENST00000224237		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
5CDS-intron	ENST00000393820	ENST00000485947		TCGA	LD	LGG	TCGA-FG-6692-01A	NPM1	chr5	170815010	+	VIM	chr10	17278293	+
Frame-shit	ENST00000394480	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000394480	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000557856	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000557856	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000357724	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000357724	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000355254	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000355254	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000360948	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000360948	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
intron-3CDS	ENST00000542733	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
intron-intron	ENST00000542733	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000558676	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000558676	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000317501	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000317501	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
intron-3CDS	ENST00000558306	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
intron-intron	ENST00000558306	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000540489	ENST00000389131		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
5CDS-intron	ENST00000540489	ENST00000518472		TCGA	LD	LGG	TCGA-FG-6692-01A	NTRK3	chr15	88799137	-	LOXL2	chr8	23191136	-
Frame-shit	ENST00000378641	ENST00000377452		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
5CDS-3UTR	ENST00000378641	ENST00000494921		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
Frame-shit	ENST00000338037	ENST00000377452		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
5CDS-3UTR	ENST00000338037	ENST00000494921		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
Frame-shit	ENST00000378637	ENST00000377452		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
5CDS-3UTR	ENST00000378637	ENST00000494921		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
intron-3CDS	ENST00000494924	ENST00000377452		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
intron-3UTR	ENST00000494924	ENST00000494921		TCGA	LD	LGG	TCGA-FG-8185-01A	PLCB1	chr20	8770908	+	DTD1	chr20	18608771	+
intron-3CDS	ENST00000278360	ENST00000278379		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000278360	ENST00000395750		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000278360	ENST00000395753		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000278360	ENST00000606205		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-intron	ENST00000278360	ENST00000479543		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000378880	ENST00000278379		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000378880	ENST00000395750		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000378880	ENST00000395753		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000378880	ENST00000606205		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-intron	ENST00000378880	ENST00000479543		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000378878	ENST00000278379		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000378878	ENST00000395750		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000378878	ENST00000395753		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000378878	ENST00000606205		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-intron	ENST00000378878	ENST00000479543		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000532848	ENST00000278379		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000532848	ENST00000395750		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000532848	ENST00000395753		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000532848	ENST00000606205		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-intron	ENST00000532848	ENST00000479543		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000534803	ENST00000278379		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000534803	ENST00000395750		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000534803	ENST00000395753		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000534803	ENST00000606205		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
intron-intron	ENST00000534803	ENST00000479543		TCGA	LD	LGG	TCGA-FG-8189-01B	PAMR1	chr11	35453536	-	SLC1A2	chr11	35339063	-
5UTR-5UTR	ENST00000395535	ENST00000331872		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000395535	ENST00000417584		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000395535	ENST00000311223		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000395535	ENST00000491322		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000395535	ENST00000339526		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000352861	ENST00000331872		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000352861	ENST00000417584		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000352861	ENST00000311223		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000352861	ENST00000491322		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000352861	ENST00000339526		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000415949	ENST00000331872		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000415949	ENST00000417584		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000415949	ENST00000311223		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000415949	ENST00000491322		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000415949	ENST00000339526		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
intron-5UTR	ENST00000450622	ENST00000331872		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
intron-5UTR	ENST00000450622	ENST00000417584		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
intron-5UTR	ENST00000450622	ENST00000311223		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
intron-5UTR	ENST00000450622	ENST00000491322		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
intron-5UTR	ENST00000450622	ENST00000339526		TCGA	LD	LGG	TCGA-FG-A4MU-01B	SEC61G	chr7	54826851	-	GLUL	chr1	182357885	-
5UTR-5UTR	ENST00000262053	ENST00000484834		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
5UTR-intron	ENST00000262053	ENST00000367229		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
5UTR-intron	ENST00000262053	ENST00000255427		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
5UTR-intron	ENST00000262053	ENST00000535569		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
intron-5UTR	ENST00000539132	ENST00000484834		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
intron-intron	ENST00000539132	ENST00000367229		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
intron-intron	ENST00000539132	ENST00000255427		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
intron-intron	ENST00000539132	ENST00000535569		TCGA	LD	LGG	TCGA-FG-A4MW-01A	ATF1	chr12	51158090	+	CHIT1	chr1	203182173	-
Frame-shit	ENST00000264554	ENST00000361574		TCGA	LD	LGG	TCGA-FG-A4MY-01A	SHC2	chr19	430684	-	R3HDM4	chr19	902130	-
5CDS-intron	ENST00000264554	ENST00000587975		TCGA	LD	LGG	TCGA-FG-A4MY-01A	SHC2	chr19	430684	-	R3HDM4	chr19	902130	-
Frame-shit	ENST00000334527	ENST00000380358		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000334527	ENST00000358181		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000334527	ENST00000330494		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
5CDS-intron	ENST00000334527	ENST00000570758		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000299734	ENST00000380358		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000299734	ENST00000358181		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000299734	ENST00000330494		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
5CDS-intron	ENST00000299734	ENST00000570758		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-3CDS	ENST00000585098	ENST00000380358		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-3CDS	ENST00000585098	ENST00000358181		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-3CDS	ENST00000585098	ENST00000330494		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-intron	ENST00000585098	ENST00000570758		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000380025	ENST00000380358		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000380025	ENST00000358181		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000380025	ENST00000330494		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
5CDS-intron	ENST00000380025	ENST00000570758		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000402554	ENST00000380358		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000402554	ENST00000358181		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
Frame-shit	ENST00000402554	ENST00000330494		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
5CDS-intron	ENST00000402554	ENST00000570758		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-3CDS	ENST00000583066	ENST00000380358		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-3CDS	ENST00000583066	ENST00000358181		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-3CDS	ENST00000583066	ENST00000330494		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
intron-intron	ENST00000583066	ENST00000570758		TCGA	LD	LGG	TCGA-FG-A60L-01A	NDEL1	chr17	8352004	+	CHD3	chr17	7814165	+
5CDS-intron	ENST00000398073	ENST00000543426		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000398073	ENST00000228682		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000398073	ENST00000546141		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
5CDS-intron	ENST00000548823	ENST00000543426		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000548823	ENST00000228682		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000548823	ENST00000546141		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
intron-intron	ENST00000547701	ENST00000543426		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
intron-5UTR	ENST00000547701	ENST00000228682		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
intron-5UTR	ENST00000547701	ENST00000546141		TCGA	LD	LGG	TCGA-FG-A70Z-01A	CTDSP2	chr12	58240155	-	GLI1	chr12	57857448	+
In-frame	ENST00000548256	ENST00000309668		TCGA	LD	LGG	TCGA-FG-A70Z-01A	METTL21B	chr12	58166911	+	INHBC	chr12	57843060	+
5UTR-3CDS	ENST00000551420	ENST00000309668		TCGA	LD	LGG	TCGA-FG-A70Z-01A	METTL21B	chr12	58166911	+	INHBC	chr12	57843060	+
In-frame	ENST00000300209	ENST00000309668		TCGA	LD	LGG	TCGA-FG-A70Z-01A	METTL21B	chr12	58166911	+	INHBC	chr12	57843060	+
intron-3CDS	ENST00000552307	ENST00000309668		TCGA	LD	LGG	TCGA-FG-A70Z-01A	METTL21B	chr12	58166911	+	INHBC	chr12	57843060	+
In-frame	ENST00000333012	ENST00000309668		TCGA	LD	LGG	TCGA-FG-A70Z-01A	METTL21B	chr12	58166911	+	INHBC	chr12	57843060	+
5CDS-3UTR	ENST00000371996	ENST00000438248		TCGA	LD	LGG	TCGA-FG-A70Z-01A	MINPP1	chr10	89272978	+	CFL1P1	chr10	89603567	+
intron-3UTR	ENST00000371994	ENST00000438248		TCGA	LD	LGG	TCGA-FG-A70Z-01A	MINPP1	chr10	89272978	+	CFL1P1	chr10	89603567	+
5CDS-3UTR	ENST00000536010	ENST00000438248		TCGA	LD	LGG	TCGA-FG-A70Z-01A	MINPP1	chr10	89272978	+	CFL1P1	chr10	89603567	+
intron-3UTR	ENST00000472891	ENST00000438248		TCGA	LD	LGG	TCGA-FG-A70Z-01A	MINPP1	chr10	89272978	+	CFL1P1	chr10	89603567	+
Frame-shit	ENST00000371953	ENST00000308448		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
Frame-shit	ENST00000371953	ENST00000328142		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
Frame-shit	ENST00000371953	ENST00000400215		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
Frame-shit	ENST00000371953	ENST00000541004		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
5CDS-5UTR	ENST00000371953	ENST00000495903		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
intron-3CDS	ENST00000472832	ENST00000308448		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
intron-3CDS	ENST00000472832	ENST00000328142		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
intron-3CDS	ENST00000472832	ENST00000400215		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
intron-3CDS	ENST00000472832	ENST00000541004		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
intron-5UTR	ENST00000472832	ENST00000495903		TCGA	LD	LGG	TCGA-FG-A70Z-01A	PTEN	chr10	89653866	+	ATAD1	chr10	89550187	-
Frame-shit	ENST00000306735	ENST00000392133		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
Frame-shit	ENST00000306735	ENST00000392132		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
5CDS-intron	ENST00000306735	ENST00000471649		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000586847	ENST00000392133		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000586847	ENST00000392132		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
intron-intron	ENST00000586847	ENST00000471649		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000262197	ENST00000392133		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000262197	ENST00000392132		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
intron-intron	ENST00000262197	ENST00000471649		TCGA	LD	LGG	TCGA-FG-A711-01A	RBFA	chr18	77802219	+	XRCC5	chr2	217054948	+
Frame-shit	ENST00000427197	ENST00000266058		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
Frame-shit	ENST00000427197	ENST00000371070		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
Frame-shit	ENST00000427197	ENST00000371041		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
5CDS-intron	ENST00000427197	ENST00000456008		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
Frame-shit	ENST00000371408	ENST00000266058		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
Frame-shit	ENST00000371408	ENST00000371070		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
Frame-shit	ENST00000371408	ENST00000371041		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
5CDS-intron	ENST00000371408	ENST00000456008		TCGA	LD	LGG	TCGA-FG-A87N-01A	SLC35G1	chr10	95653917	+	SLIT1	chr10	98825843	-
In-frame	ENST00000589222	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
In-frame	ENST00000407086	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
In-frame	ENST00000390652	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
In-frame	ENST00000408905	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
In-frame	ENST00000588462	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
In-frame	ENST00000585744	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
In-frame	ENST00000588874	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
intron-3CDS	ENST00000585812	ENST00000258975		TCGA	LD	LGG	TCGA-FG-A87Q-01A	BCAS3	chr17	59161925	+	TACO1	chr17	61681894	+
Frame-shit	ENST00000457714	ENST00000446050		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000457714	ENST00000295777		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
5CDS-3UTR	ENST00000457714	ENST00000488374		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000361589	ENST00000446050		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000361589	ENST00000295777		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
5CDS-3UTR	ENST00000361589	ENST00000488374		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000401917	ENST00000446050		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000401917	ENST00000295777		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
5CDS-3UTR	ENST00000401917	ENST00000488374		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000545397	ENST00000446050		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
Frame-shit	ENST00000545397	ENST00000295777		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
5CDS-3UTR	ENST00000545397	ENST00000488374		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
intron-3CDS	ENST00000466350	ENST00000446050		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
intron-3CDS	ENST00000466350	ENST00000295777		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
intron-3UTR	ENST00000466350	ENST00000488374		TCGA	LD	LGG	TCGA-HT-7470-01A	NLGN1	chr3	173525622	+	SERPINI1	chr3	167525032	+
In-frame	ENST00000423059	ENST00000544935		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
In-frame	ENST00000423059	ENST00000537384		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
In-frame	ENST00000423059	ENST00000406797		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
In-frame	ENST00000423059	ENST00000403562		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
In-frame	ENST00000423059	ENST00000360274		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
5CDS-intron	ENST00000423059	ENST00000488474		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
intron-3CDS	ENST00000480061	ENST00000544935		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
intron-3CDS	ENST00000480061	ENST00000537384		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
intron-3CDS	ENST00000480061	ENST00000406797		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
intron-3CDS	ENST00000480061	ENST00000403562		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
intron-3CDS	ENST00000480061	ENST00000360274		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
intron-intron	ENST00000480061	ENST00000488474		TCGA	LD	LGG	TCGA-HT-7470-01A	THSD7A	chr7	11457077	-	PRKAR1B	chr7	591107	-
5CDS-intron	ENST00000394196	ENST00000303052		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000394196	ENST00000607537		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000394196	ENST00000303032		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000557381	ENST00000303052		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000557381	ENST00000607537		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000557381	ENST00000303032		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000420239	ENST00000303052		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000420239	ENST00000607537		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000420239	ENST00000303032		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000536619	ENST00000303052		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000536619	ENST00000607537		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
5CDS-intron	ENST00000536619	ENST00000303032		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
intron-intron	ENST00000554122	ENST00000303052		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
intron-intron	ENST00000554122	ENST00000607537		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
intron-intron	ENST00000554122	ENST00000303032		TCGA	LD	LGG	TCGA-HT-7477-01B	CHD2	chr15	93492273	+	CSNK1G1	chr15	64473418	-
Frame-shit	ENST00000381226	ENST00000340635		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381226	ENST00000360047		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381226	ENST00000507116		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381226	ENST00000502484		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381226	ENST00000546160		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381226	ENST00000502575		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381226	ENST00000358923		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381226	ENST00000503258		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381226	ENST00000405755		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381226	ENST00000317118		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-5UTR	ENST00000381226	ENST00000503947		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381213	ENST00000340635		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381213	ENST00000360047		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381213	ENST00000507116		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381213	ENST00000502484		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381213	ENST00000546160		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381213	ENST00000502575		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381213	ENST00000358923		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381213	ENST00000503258		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381213	ENST00000405755		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381213	ENST00000317118		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-5UTR	ENST00000381213	ENST00000503947		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381199	ENST00000340635		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381199	ENST00000360047		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381199	ENST00000507116		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381199	ENST00000502484		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381199	ENST00000546160		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
Frame-shit	ENST00000381199	ENST00000502575		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381199	ENST00000358923		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381199	ENST00000503258		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381199	ENST00000405755		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-intron	ENST00000381199	ENST00000317118		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5CDS-5UTR	ENST00000381199	ENST00000503947		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-3CDS	ENST00000409421	ENST00000340635		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-3CDS	ENST00000409421	ENST00000360047		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-3CDS	ENST00000409421	ENST00000507116		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-3CDS	ENST00000409421	ENST00000502484		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-3CDS	ENST00000409421	ENST00000546160		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-3CDS	ENST00000409421	ENST00000502575		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-intron	ENST00000409421	ENST00000358923		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-intron	ENST00000409421	ENST00000503258		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-intron	ENST00000409421	ENST00000405755		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-intron	ENST00000409421	ENST00000317118		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-5UTR	ENST00000409421	ENST00000503947		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-3CDS	ENST00000546593	ENST00000340635		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-3CDS	ENST00000546593	ENST00000360047		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-3CDS	ENST00000546593	ENST00000507116		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-3CDS	ENST00000546593	ENST00000502484		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-3CDS	ENST00000546593	ENST00000546160		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-3CDS	ENST00000546593	ENST00000502575		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-intron	ENST00000546593	ENST00000358923		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-intron	ENST00000546593	ENST00000503258		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-intron	ENST00000546593	ENST00000405755		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-intron	ENST00000546593	ENST00000317118		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
5UTR-5UTR	ENST00000546593	ENST00000503947		TCGA	LD	LGG	TCGA-HT-7477-01B	MIER3	chr5	56246455	-	PDE4D	chr5	58489362	-
intron-5UTR	ENST00000434693	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000434693	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000434693	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000434693	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000434693	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000434693	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000434693	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000434693	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000434693	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000396583	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000396583	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000396583	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000396583	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000396583	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000396583	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000396583	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000396583	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000396583	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383767	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383767	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000383767	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383767	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383767	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000383767	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383767	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383767	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000383767	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000445033	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000445033	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000445033	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000445033	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000445033	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000445033	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000445033	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000445033	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000445033	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000273139	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000273139	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000273139	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000273139	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000273139	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000273139	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000273139	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000273139	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000273139	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383766	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383766	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000383766	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383766	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383766	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000383766	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383766	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000383766	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000383766	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000452462	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000452462	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000452462	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000452462	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000452462	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000452462	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000452462	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000452462	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000452462	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000456853	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000456853	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000456853	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000456853	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000456853	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000456853	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000456853	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000456853	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000456853	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000473799	ENST00000406164		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000473799	ENST00000406824		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000473799	ENST00000339837		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000473799	ENST00000413939		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000473799	ENST00000296202		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000473799	ENST00000511444		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000473799	ENST00000512391		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-5UTR	ENST00000473799	ENST00000514703		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
intron-intron	ENST00000473799	ENST00000507242		TCGA	LD	LGG	TCGA-HT-7477-01B	RBMS3	chr3	29224620	+	NMNAT3	chr3	139346603	-
5UTR-3CDS	ENST00000496760	ENST00000052754		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000425043		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000393155		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000228329		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000303320		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000552962		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000441303		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000420120		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000547568		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000456569		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000546370		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000546745		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000550099		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000551354		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000496760	ENST00000548768		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-3CDS	ENST00000380590	ENST00000052754		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000425043		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000393155		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000228329		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000303320		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000552962		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000441303		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000420120		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000547568		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000456569		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000546370		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000546745		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000550099		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000551354		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
intron-intron	ENST00000380590	ENST00000548768		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-3CDS	ENST00000377716	ENST00000052754		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000425043		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000393155		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000228329		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000303320		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000552962		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000441303		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000420120		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000547568		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000456569		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000546370		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000546745		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000550099		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000551354		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000377716	ENST00000548768		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-3CDS	ENST00000242275	ENST00000052754		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000425043		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000393155		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000228329		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000303320		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000552962		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000441303		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000420120		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000547568		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000456569		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000546370		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000546745		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000550099		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000551354		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
5UTR-intron	ENST00000242275	ENST00000548768		TCGA	LD	LGG	TCGA-HT-7477-01B	SLC25A51	chr9	37899826	-	DCN	chr12	91558494	-
Frame-shit	ENST00000439590	ENST00000589222		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000439590	ENST00000407086		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000439590	ENST00000390652		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000439590	ENST00000408905		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000439590	ENST00000588462		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000439590	ENST00000585744		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000439590	ENST00000588874		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
5CDS-intron	ENST00000439590	ENST00000585812		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000589222		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000407086		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000390652		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000408905		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000588462		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000585744		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000311111	ENST00000588874		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
5CDS-intron	ENST00000311111	ENST00000585812		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000589222		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000407086		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000390652		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000408905		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000588462		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000585744		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000584577	ENST00000588874		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
5CDS-intron	ENST00000584577	ENST00000585812		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000589222		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000407086		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000390652		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000408905		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000588462		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000585744		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000534490	ENST00000588874		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
5CDS-intron	ENST00000534490	ENST00000585812		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000589222		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000407086		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000390652		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000408905		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000588462		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000585744		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
Frame-shit	ENST00000533498	ENST00000588874		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
5CDS-intron	ENST00000533498	ENST00000585812		TCGA	LD	LGG	TCGA-HT-7479-01A	RPL38	chr17	72200329	+	BCAS3	chr17	58979981	+
intron-3CDS	ENST00000607334	ENST00000369043		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
intron-3CDS	ENST00000607334	ENST00000535655		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
intron-3CDS	ENST00000607334	ENST00000224652		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
intron-3CDS	ENST00000607334	ENST00000369040		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
intron-3CDS	ENST00000607334	ENST00000540606		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
intron-3CDS	ENST00000607334	ENST00000543447		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
intron-intron	ENST00000607334	ENST00000481784		TCGA	LD	LGG	TCGA-HT-7483-01A	DLEU2	chr13	50649695	-	ATE1	chr10	123503373	-
Frame-shit	ENST00000288985	ENST00000483873		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
Frame-shit	ENST00000288985	ENST00000372146		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
3UTR-3CDS	ENST00000466840	ENST00000483873		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
3UTR-3CDS	ENST00000466840	ENST00000372146		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
Frame-shit	ENST00000437817	ENST00000483873		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
Frame-shit	ENST00000437817	ENST00000372146		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
intron-3CDS	ENST00000407474	ENST00000483873		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
intron-3CDS	ENST00000407474	ENST00000372146		TCGA	LD	LGG	TCGA-HT-7483-01A	ERCC6L2	chr9	98703831	+	GTF3C4	chr9	135553364	+
intron-3CDS	ENST00000372189	ENST00000313050		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372189	ENST00000467838		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372189	ENST00000371706		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372189	ENST00000313084		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372189	ENST00000290037		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372189	ENST00000431893		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372189	ENST00000398335		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
In-frame	ENST00000372195	ENST00000313050		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
5CDS-intron	ENST00000372195	ENST00000467838		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
5CDS-intron	ENST00000372195	ENST00000371706		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
5CDS-intron	ENST00000372195	ENST00000313084		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
5CDS-intron	ENST00000372195	ENST00000290037		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
5CDS-intron	ENST00000372195	ENST00000431893		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
5CDS-intron	ENST00000372195	ENST00000398335		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-3CDS	ENST00000372190	ENST00000313050		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372190	ENST00000467838		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372190	ENST00000371706		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372190	ENST00000313084		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372190	ENST00000290037		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372190	ENST00000431893		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000372190	ENST00000398335		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-3CDS	ENST00000481260	ENST00000313050		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000481260	ENST00000467838		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000481260	ENST00000371706		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000481260	ENST00000313084		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000481260	ENST00000290037		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000481260	ENST00000431893		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
intron-intron	ENST00000481260	ENST00000398335		TCGA	LD	LGG	TCGA-HT-7483-01A	RAPGEF1	chr9	134615157	-	SEC16A	chr9	139372136	-
Frame-shit	ENST00000290650	ENST00000290607		TCGA	LD	LGG	TCGA-HT-7483-01A	UBR1	chr15	43262718	-	STARD9	chr15	42927054	+
3UTR-3CDS	ENST00000382177	ENST00000290607		TCGA	LD	LGG	TCGA-HT-7483-01A	UBR1	chr15	43262718	-	STARD9	chr15	42927054	+
intron-3CDS	ENST00000568782	ENST00000290607		TCGA	LD	LGG	TCGA-HT-7483-01A	UBR1	chr15	43262718	-	STARD9	chr15	42927054	+
In-frame	ENST00000011619	ENST00000397457		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
In-frame	ENST00000011619	ENST00000543936		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
5CDS-5UTR	ENST00000011619	ENST00000475998		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
intron-3CDS	ENST00000469916	ENST00000397457		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
intron-3CDS	ENST00000469916	ENST00000543936		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
intron-5UTR	ENST00000469916	ENST00000475998		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
intron-3CDS	ENST00000539980	ENST00000397457		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
intron-3CDS	ENST00000539980	ENST00000543936		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
intron-5UTR	ENST00000539980	ENST00000475998		TCGA	LD	LGG	TCGA-HT-7604-01A	RANBP9	chr6	13697017	-	BLOC1S5	chr6	8016061	-
In-frame	ENST00000343979	ENST00000397661		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
In-frame	ENST00000343979	ENST00000592199		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
In-frame	ENST00000343979	ENST00000587760		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
In-frame	ENST00000343979	ENST00000585575		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
In-frame	ENST00000343979	ENST00000360105		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000343979	ENST00000588228		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000343979	ENST00000587260		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000343979	ENST00000358552		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000343979	ENST00000588680		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000398616	ENST00000397661		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000398616	ENST00000592199		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000398616	ENST00000587760		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000398616	ENST00000585575		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-3CDS	ENST00000398616	ENST00000360105		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-5UTR	ENST00000398616	ENST00000588228		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-5UTR	ENST00000398616	ENST00000587260		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-5UTR	ENST00000398616	ENST00000358552		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
5UTR-intron	ENST00000398616	ENST00000588680		TCGA	LD	LGG	TCGA-HT-7604-01A	ZNF136	chr19	12274021	+	NFIX	chr19	13135835	+
In-frame	ENST00000403829	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000403829	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000298687	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000298687	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000350792	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000350792	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000397858	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000397858	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000554104	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000554104	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000555158	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000555158	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000553503	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000553503	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000397853	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000397853	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000360463	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000360463	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000556147	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000556147	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000397856	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000397856	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000397855	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000397855	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000554143	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000554143	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000397851	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000397851	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
intron-3CDS	ENST00000397847	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
intron-intron	ENST00000397847	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000298684	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000298684	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
Frame-shit	ENST00000397844	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
5CDS-intron	ENST00000397844	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
intron-3CDS	ENST00000554277	ENST00000231061		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
intron-intron	ENST00000554277	ENST00000537849		TCGA	LD	LGG	TCGA-HT-7680-01A	NDRG2	chr14	21486922	-	SPARC	chr5	151049345	-
In-frame	ENST00000376214	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376214	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376214	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376214	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000376214	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376213	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376213	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376213	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376213	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000376213	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395882	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395882	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395882	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395882	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000395882	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000304053	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000304053	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000304053	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000304053	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000304053	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376208	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376208	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376208	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000376208	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000376208	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000277120	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000277120	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000277120	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000277120	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000277120	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000323115	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000323115	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000323115	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000323115	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000323115	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000359847	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000359847	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000359847	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000359847	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000359847	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395866	ENST00000360265		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395866	ENST00000358461		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395866	ENST00000420658		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
In-frame	ENST00000395866	ENST00000382543		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
5CDS-5UTR	ENST00000395866	ENST00000513842		TCGA	LD	LGG	TCGA-HT-7680-01A	NTRK2	chr9	87342874	+	AFAP1	chr4	7776630	-
intron-3CDS	ENST00000399568	ENST00000335953		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000399568	ENST00000392996		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-intron	ENST00000399568	ENST00000535379		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000542103	ENST00000335953		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000542103	ENST00000392996		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-intron	ENST00000542103	ENST00000535379		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000399562	ENST00000335953		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000399562	ENST00000392996		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-intron	ENST00000399562	ENST00000535379		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000333059	ENST00000335953		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-3CDS	ENST00000333059	ENST00000392996		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
intron-intron	ENST00000333059	ENST00000535379		TCGA	LD	LGG	TCGA-HT-7686-01A	C22orf39	chr22	19384310	-	ZBTB16	chr11	114027059	+
Frame-shit	ENST00000332050	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000332050	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000332050	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000332050	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
5CDS-intron	ENST00000332050	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000397938	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000397938	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000397938	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000397938	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
5CDS-intron	ENST00000397938	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000406548	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000406548	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000406548	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000406548	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
5CDS-intron	ENST00000406548	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000331029	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000331029	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000331029	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000331029	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
5CDS-intron	ENST00000331029	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000414183	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000414183	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000414183	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000414183	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
5CDS-intron	ENST00000414183	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000333395	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000333395	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000333395	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
Frame-shit	ENST00000333395	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
5CDS-intron	ENST00000333395	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
intron-3CDS	ENST00000332035	ENST00000420993		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
intron-3CDS	ENST00000332035	ENST00000395698		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
intron-3CDS	ENST00000332035	ENST00000395701		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
intron-3CDS	ENST00000332035	ENST00000299821		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
intron-intron	ENST00000332035	ENST00000520297		TCGA	LD	LGG	TCGA-HT-7686-01A	EWSR1	chr22	29678546	+	NCAPH2	chr22	50954876	+
intron-5UTR	ENST00000441493	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000441493	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000441493	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000400561	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000400561	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000444520	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000444520	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000414725	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000414725	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000383094	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000383094	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000207726	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000207726	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000429452	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000429452	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000585038	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000585038	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000539526		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000540359		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000260282		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000527717		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000526014		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000524656		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000584394		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000529335		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-intron	ENST00000580469	ENST00000583233		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000527429		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000530956		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-5UTR	ENST00000580469	ENST00000584230		TCGA	LD	LGG	TCGA-HT-7686-01A	MICAL3	chr22	18484159	-	FXYD6	chr11	117713496	-
intron-3CDS	ENST00000301923	ENST00000525071		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000301923	ENST00000429869		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000301923	ENST00000525815		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-intron	ENST00000301923	ENST00000265836		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-5UTR	ENST00000301923	ENST00000375682		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000402203	ENST00000525071		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000402203	ENST00000429869		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000402203	ENST00000525815		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-intron	ENST00000402203	ENST00000265836		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-5UTR	ENST00000402203	ENST00000375682		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
In-frame	ENST00000454349	ENST00000525071		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
In-frame	ENST00000454349	ENST00000429869		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
In-frame	ENST00000454349	ENST00000525815		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
5CDS-intron	ENST00000454349	ENST00000265836		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
5CDS-5UTR	ENST00000454349	ENST00000375682		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
In-frame	ENST00000335727	ENST00000525071		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
In-frame	ENST00000335727	ENST00000429869		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
In-frame	ENST00000335727	ENST00000525815		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
5CDS-intron	ENST00000335727	ENST00000265836		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
5CDS-5UTR	ENST00000335727	ENST00000375682		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000497559	ENST00000525071		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000497559	ENST00000429869		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-3CDS	ENST00000497559	ENST00000525815		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-intron	ENST00000497559	ENST00000265836		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
intron-5UTR	ENST00000497559	ENST00000375682		TCGA	LD	LGG	TCGA-HT-7686-01A	TNRC6B	chr22	40574144	+	SLC35F2	chr11	107686691	-
5CDS-intron	ENST00000357179	ENST00000456860		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000357179	ENST00000322282		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000357179	ENST00000529750		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000357179	ENST00000450171		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000398793	ENST00000456860		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000398793	ENST00000322282		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000398793	ENST00000529750		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
5CDS-intron	ENST00000398793	ENST00000450171		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
3UTR-intron	ENST00000413067	ENST00000456860		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
3UTR-intron	ENST00000413067	ENST00000322282		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
3UTR-intron	ENST00000413067	ENST00000529750		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
3UTR-intron	ENST00000413067	ENST00000450171		TCGA	LD	LGG	TCGA-HT-7686-01A	TOP3B	chr22	22314693	-	GRAMD1B	chr11	123351524	+
intron-intron	ENST00000356333	ENST00000330906		TCGA	LD	LGG	TCGA-HT-7689-01A	FAM156A	chrX	53024485	-	XAGE2	chrX	52113150	+
intron-intron	ENST00000316310	ENST00000330906		TCGA	LD	LGG	TCGA-HT-7689-01A	FAM156A	chrX	53024485	-	XAGE2	chrX	52113150	+
intron-intron	ENST00000330025	ENST00000330906		TCGA	LD	LGG	TCGA-HT-7689-01A	FAM156A	chrX	53024485	-	XAGE2	chrX	52113150	+
5UTR-intron	ENST00000512364	ENST00000330906		TCGA	LD	LGG	TCGA-HT-7689-01A	FAM156A	chrX	53024485	-	XAGE2	chrX	52113150	+
5UTR-intron	ENST00000414076	ENST00000330906		TCGA	LD	LGG	TCGA-HT-7689-01A	FAM156A	chrX	53024485	-	XAGE2	chrX	52113150	+
intron-intron	ENST00000493931	ENST00000330906		TCGA	LD	LGG	TCGA-HT-7689-01A	FAM156A	chrX	53024485	-	XAGE2	chrX	52113150	+
Frame-shit	ENST00000224167	ENST00000330634		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-intron	ENST00000224167	ENST00000398337		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-3UTR	ENST00000224167	ENST00000392634		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-3UTR	ENST00000224167	ENST00000481338		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
Frame-shit	ENST00000371625	ENST00000330634		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-intron	ENST00000371625	ENST00000398337		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-3UTR	ENST00000371625	ENST00000392634		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-3UTR	ENST00000371625	ENST00000481338		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
intron-3CDS	ENST00000460340	ENST00000330634		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
intron-intron	ENST00000460340	ENST00000398337		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
intron-3UTR	ENST00000460340	ENST00000392634		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
intron-3UTR	ENST00000460340	ENST00000481338		TCGA	LD	LGG	TCGA-HT-7689-01A	PTGDS	chr9	139872144	+	INF2	chr14	105185132	+
5CDS-3UTR	ENST00000275262	ENST00000431975		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000275262	ENST00000541650		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000275262	ENST00000366358		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000275262	ENST00000368123		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000275262	ENST00000537868		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000275262	ENST00000263050		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000275262	ENST00000342266		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000275262	ENST00000474850		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000392127	ENST00000431975		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000392127	ENST00000541650		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000392127	ENST00000366358		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000392127	ENST00000368123		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000392127	ENST00000537868		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000392127	ENST00000263050		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000392127	ENST00000342266		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000392127	ENST00000474850		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000453779	ENST00000431975		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000453779	ENST00000541650		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000453779	ENST00000366358		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000453779	ENST00000368123		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000453779	ENST00000537868		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000453779	ENST00000263050		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000453779	ENST00000342266		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000453779	ENST00000474850		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361752	ENST00000431975		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361752	ENST00000541650		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000361752	ENST00000366358		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361752	ENST00000368123		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361752	ENST00000537868		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361752	ENST00000263050		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361752	ENST00000342266		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000361752	ENST00000474850		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361195	ENST00000431975		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361195	ENST00000541650		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000361195	ENST00000366358		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361195	ENST00000368123		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361195	ENST00000537868		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361195	ENST00000263050		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000361195	ENST00000342266		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000361195	ENST00000474850		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000424802	ENST00000431975		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000424802	ENST00000541650		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000424802	ENST00000366358		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000424802	ENST00000368123		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000424802	ENST00000537868		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000424802	ENST00000263050		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-3UTR	ENST00000424802	ENST00000342266		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
5CDS-intron	ENST00000424802	ENST00000474850		TCGA	LD	LGG	TCGA-HT-7689-01A	QKI	chr6	163983101	+	AKAP7	chr6	131603539	+
In-frame	ENST00000446256	ENST00000383737		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000446256	ENST00000395734		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000446256	ENST00000426837		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000446256	ENST00000360240		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000446256	ENST00000439356		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000446256	ENST00000264724		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000446256	ENST00000420772		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000446256	ENST00000441748		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000446256	ENST00000462206		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000446256	ENST00000434267		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000445061	ENST00000383737		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000445061	ENST00000395734		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000445061	ENST00000426837		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000445061	ENST00000360240		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000445061	ENST00000439356		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000445061	ENST00000264724		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000445061	ENST00000420772		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000445061	ENST00000441748		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000445061	ENST00000462206		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000445061	ENST00000434267		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-3CDS	ENST00000476446	ENST00000383737		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-3CDS	ENST00000476446	ENST00000395734		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-3CDS	ENST00000476446	ENST00000426837		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-3CDS	ENST00000476446	ENST00000360240		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-intron	ENST00000476446	ENST00000439356		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-intron	ENST00000476446	ENST00000264724		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-intron	ENST00000476446	ENST00000420772		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-5UTR	ENST00000476446	ENST00000441748		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-5UTR	ENST00000476446	ENST00000462206		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
intron-intron	ENST00000476446	ENST00000434267		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000348968	ENST00000383737		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000348968	ENST00000395734		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000348968	ENST00000426837		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000348968	ENST00000360240		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000348968	ENST00000439356		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000348968	ENST00000264724		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000348968	ENST00000420772		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000348968	ENST00000441748		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000348968	ENST00000462206		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000348968	ENST00000434267		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000457607	ENST00000383737		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000457607	ENST00000395734		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000457607	ENST00000426837		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
In-frame	ENST00000457607	ENST00000360240		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000457607	ENST00000439356		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000457607	ENST00000264724		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000457607	ENST00000420772		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000457607	ENST00000441748		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-5UTR	ENST00000457607	ENST00000462206		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5CDS-intron	ENST00000457607	ENST00000434267		TCGA	LD	LGG	TCGA-HT-7695-01A	DHX30	chr3	47870624	+	MAP4	chr3	47913590	-
5UTR-intron	ENST00000457030	ENST00000476882		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000457030	ENST00000370759		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000330010	ENST00000476882		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000330010	ENST00000370759		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000294624	ENST00000476882		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000294624	ENST00000370759		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000334785	ENST00000476882		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
5UTR-intron	ENST00000334785	ENST00000370759		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
intron-intron	ENST00000480732	ENST00000476882		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
intron-intron	ENST00000480732	ENST00000370759		TCGA	LD	LGG	TCGA-HT-7695-01A	NEXN	chr1	78354444	+	GIPC2	chr1	78585077	+
In-frame	ENST00000278360	ENST00000278379		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000278360	ENST00000395750		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000278360	ENST00000395753		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000278360	ENST00000606205		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000278360	ENST00000479543		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
In-frame	ENST00000378880	ENST00000278379		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000378880	ENST00000395750		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000378880	ENST00000395753		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000378880	ENST00000606205		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000378880	ENST00000479543		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
In-frame	ENST00000378878	ENST00000278379		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000378878	ENST00000395750		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000378878	ENST00000395753		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000378878	ENST00000606205		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000378878	ENST00000479543		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
Frame-shit	ENST00000532848	ENST00000278379		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000532848	ENST00000395750		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000532848	ENST00000395753		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000532848	ENST00000606205		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000532848	ENST00000479543		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000534803	ENST00000278379		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000534803	ENST00000395750		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000534803	ENST00000395753		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000534803	ENST00000606205		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
intron-intron	ENST00000534803	ENST00000479543		TCGA	LD	LGG	TCGA-HT-7854-01A	PAMR1	chr11	35461175	-	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000561976	ENST00000508784		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-3CDS	ENST00000561976	ENST00000513320		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-3CDS	ENST00000561976	ENST00000379448		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-intron	ENST00000561976	ENST00000511534		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
Frame-shit	ENST00000389386	ENST00000508784		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
Frame-shit	ENST00000389386	ENST00000513320		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
Frame-shit	ENST00000389386	ENST00000379448		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
5CDS-intron	ENST00000389386	ENST00000511534		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-3CDS	ENST00000565452	ENST00000508784		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-3CDS	ENST00000565452	ENST00000513320		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-3CDS	ENST00000565452	ENST00000379448		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
intron-intron	ENST00000565452	ENST00000511534		TCGA	LD	LGG	TCGA-HT-7857-01A	VPS9D1	chr16	89787171	-	ZNF827	chr4	146700663	-
5UTR-3CDS	ENST00000522692	ENST00000261798		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000522692	ENST00000377843		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000522692	ENST00000515435		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000522692	ENST00000504676		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000522692	ENST00000515768		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000522692	ENST00000606719		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000522692	ENST00000606299		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000522692	ENST00000515748		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000296953	ENST00000261798		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000296953	ENST00000377843		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000296953	ENST00000515435		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000296953	ENST00000504676		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000296953	ENST00000515768		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000296953	ENST00000606719		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000296953	ENST00000606299		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000296953	ENST00000515748		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000540014	ENST00000261798		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000540014	ENST00000377843		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000540014	ENST00000515435		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000540014	ENST00000504676		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000540014	ENST00000515768		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000540014	ENST00000606719		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000540014	ENST00000606299		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000540014	ENST00000515748		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000520420	ENST00000261798		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000520420	ENST00000377843		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000520420	ENST00000515435		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000520420	ENST00000504676		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000520420	ENST00000515768		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000520420	ENST00000606719		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000520420	ENST00000606299		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
5UTR-intron	ENST00000520420	ENST00000515748		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000517882	ENST00000261798		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000517882	ENST00000377843		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000517882	ENST00000515435		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000517882	ENST00000504676		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000517882	ENST00000515768		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-intron	ENST00000517882	ENST00000606719		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-intron	ENST00000517882	ENST00000606299		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-intron	ENST00000517882	ENST00000515748		TCGA	LD	LGG	TCGA-HT-7860-01A	CREBRF	chr5	172483482	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000392945	ENST00000359428		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
intron-3CDS	ENST00000392945	ENST00000411637		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
intron-3CDS	ENST00000392945	ENST00000451030		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
intron-intron	ENST00000392945	ENST00000483497		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
intron-intron	ENST00000392945	ENST00000465486		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000440944	ENST00000359428		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000440944	ENST00000411637		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000440944	ENST00000451030		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000440944	ENST00000483497		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000440944	ENST00000465486		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000429455	ENST00000359428		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000429455	ENST00000411637		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000429455	ENST00000451030		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000429455	ENST00000483497		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000429455	ENST00000465486		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000392944	ENST00000359428		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000392944	ENST00000411637		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
Frame-shit	ENST00000392944	ENST00000451030		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000392944	ENST00000483497		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
5CDS-intron	ENST00000392944	ENST00000465486		TCGA	LD	LGG	TCGA-HT-7873-01B	GPSM1	chr9	139252661	+	NUP214	chr9	134002911	+
intron-intron	ENST00000297625	ENST00000402558		TCGA	LD	LGG	TCGA-HT-7873-01B	KIAA1161	chr9	34370431	-	KIF24	chr9	34329198	-
intron-intron	ENST00000297625	ENST00000379174		TCGA	LD	LGG	TCGA-HT-7873-01B	KIAA1161	chr9	34370431	-	KIF24	chr9	34329198	-
intron-intron	ENST00000297625	ENST00000379166		TCGA	LD	LGG	TCGA-HT-7873-01B	KIAA1161	chr9	34370431	-	KIF24	chr9	34329198	-
intron-intron	ENST00000297625	ENST00000345050		TCGA	LD	LGG	TCGA-HT-7873-01B	KIAA1161	chr9	34370431	-	KIF24	chr9	34329198	-
In-frame	ENST00000335263	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000335263	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000335263	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000424963	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000424963	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000424963	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000322340	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000322340	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000322340	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5UTR-3CDS	ENST00000499851	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5UTR-intron	ENST00000499851	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5UTR-intron	ENST00000499851	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000342702	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000342702	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000342702	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000556807	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000556807	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000556807	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000558567	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000558567	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000558567	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000299135	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000299135	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000299135	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000454394	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000454394	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000454394	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000556511	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000556511	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000556511	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
3UTR-3CDS	ENST00000557186	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
3UTR-intron	ENST00000557186	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
3UTR-intron	ENST00000557186	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
intron-3CDS	ENST00000545563	ENST00000359520		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
intron-intron	ENST00000545563	ENST00000561228		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
intron-intron	ENST00000545563	ENST00000558678		TCGA	LD	LGG	TCGA-HT-7875-01A	WDR20	chr14	102606509	+	TECPR2	chr14	102963316	+
In-frame	ENST00000290650	ENST00000267890		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
In-frame	ENST00000290650	ENST00000567840		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
In-frame	ENST00000290650	ENST00000567274		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
5CDS-intron	ENST00000290650	ENST00000567485		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
3UTR-3CDS	ENST00000382177	ENST00000267890		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
3UTR-3CDS	ENST00000382177	ENST00000567840		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
3UTR-3CDS	ENST00000382177	ENST00000567274		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
3UTR-intron	ENST00000382177	ENST00000567485		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
intron-3CDS	ENST00000568782	ENST00000267890		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
intron-3CDS	ENST00000568782	ENST00000567840		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
intron-3CDS	ENST00000568782	ENST00000567274		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
intron-intron	ENST00000568782	ENST00000567485		TCGA	LD	LGG	TCGA-HT-7902-01A	UBR1	chr15	43258351	-	TTBK2	chr15	43132631	-
5UTR-intron	ENST00000456324	ENST00000341701		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-3UTR	ENST00000456324	ENST00000607650		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-3UTR	ENST00000456324	ENST00000222270		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-3UTR	ENST00000456324	ENST00000420124		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
3UTR-intron	ENST00000586094	ENST00000341701		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
3UTR-3UTR	ENST00000586094	ENST00000607650		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
3UTR-3UTR	ENST00000586094	ENST00000222270		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
3UTR-3UTR	ENST00000586094	ENST00000420124		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-intron	ENST00000443387	ENST00000341701		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-3UTR	ENST00000443387	ENST00000607650		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-3UTR	ENST00000443387	ENST00000222270		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
5UTR-3UTR	ENST00000443387	ENST00000420124		TCGA	LD	LGG	TCGA-HT-8010-01A	ZNF146	chr19	36706098	+	KMT2B	chr19	36213261	+
In-frame	ENST00000393829	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000393829	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000393829	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000393829	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000393829	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000393829	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000546249	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000546249	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000546249	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000546249	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000546249	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000546249	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000537728	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000537728	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000537728	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000537728	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000537728	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000537728	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000264649	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000264649	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000264649	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000264649	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000264649	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000264649	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000585525	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000585525	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000585525	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000585525	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000585525	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000585525	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000343619	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000343619	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000343619	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000343619	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000343619	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000343619	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000544137	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000544137	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000544137	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000544137	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000544137	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000544137	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
intron-3CDS	ENST00000587797	ENST00000341165		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
intron-3CDS	ENST00000587797	ENST00000422280		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
intron-3CDS	ENST00000587797	ENST00000542611		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
intron-3CDS	ENST00000587797	ENST00000590996		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
intron-3CDS	ENST00000587797	ENST00000389312		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
intron-3CDS	ENST00000587797	ENST00000589872		TCGA	LD	LGG	TCGA-HT-8013-01A	ATP6V0A1	chr17	40659645	+	NBR1	chr17	41338267	+
In-frame	ENST00000253083	ENST00000258111		TCGA	LD	LGG	TCGA-HT-8018-01A	HIP1R	chr12	123333155	+	KCNMB4	chr12	70793989	+
intron-3CDS	ENST00000537322	ENST00000258111		TCGA	LD	LGG	TCGA-HT-8018-01A	HIP1R	chr12	123333155	+	KCNMB4	chr12	70793989	+
5UTR-3CDS	ENST00000272203	ENST00000561640		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3CDS	ENST00000272203	ENST00000565838		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3CDS	ENST00000272203	ENST00000200691		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-intron	ENST00000272203	ENST00000570176		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3UTR	ENST00000272203	ENST00000566576		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3CDS	ENST00000414478	ENST00000561640		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3CDS	ENST00000414478	ENST00000565838		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3CDS	ENST00000414478	ENST00000200691		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-intron	ENST00000414478	ENST00000570176		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5UTR-3UTR	ENST00000414478	ENST00000566576		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
intron-3CDS	ENST00000485632	ENST00000561640		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
intron-3CDS	ENST00000485632	ENST00000565838		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
intron-3CDS	ENST00000485632	ENST00000200691		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
intron-intron	ENST00000485632	ENST00000570176		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
intron-3UTR	ENST00000485632	ENST00000566576		TCGA	LD	LGG	TCGA-HT-8104-01A	PLEKHA6	chr1	204328822	-	MT3	chr16	56624752	+
5CDS-5UTR	ENST00000256190	ENST00000391918		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-5UTR	ENST00000256190	ENST00000291295		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-5UTR	ENST00000256190	ENST00000597743		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-3UTR	ENST00000256190	ENST00000477244		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-intron	ENST00000256190	ENST00000598871		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-5UTR	ENST00000256190	ENST00000594523		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-5UTR	ENST00000256190	ENST00000599839		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-5UTR	ENST00000256190	ENST00000596362		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000527019	ENST00000391918		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000527019	ENST00000291295		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000527019	ENST00000597743		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-3UTR	ENST00000527019	ENST00000477244		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-intron	ENST00000527019	ENST00000598871		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000527019	ENST00000594523		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000527019	ENST00000599839		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000527019	ENST00000596362		TCGA	LD	LGG	TCGA-HT-8104-01A	SBF2	chr11	10215449	-	CALM3	chr19	47109084	+
5CDS-intron	ENST00000400256	ENST00000580436		TCGA	LD	LGG	TCGA-HT-8106-01A	COLEC12	chr18	480707	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000400606		TCGA	LD	LGG	TCGA-HT-8106-01A	COLEC12	chr18	480707	-	CLUL1	chr18	606978	+
5CDS-5UTR	ENST00000400256	ENST00000540035		TCGA	LD	LGG	TCGA-HT-8106-01A	COLEC12	chr18	480707	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000581619		TCGA	LD	LGG	TCGA-HT-8106-01A	COLEC12	chr18	480707	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000338387		TCGA	LD	LGG	TCGA-HT-8106-01A	COLEC12	chr18	480707	-	CLUL1	chr18	606978	+
5CDS-intron	ENST00000400256	ENST00000579494		TCGA	LD	LGG	TCGA-HT-8106-01A	COLEC12	chr18	480707	-	CLUL1	chr18	606978	+
5UTR-3CDS	ENST00000345739	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000345739	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000345739	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000345739	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000345739	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000264110	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000264110	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000264110	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000264110	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000264110	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000409635	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409635	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409635	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409635	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000409635	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000392543	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000392543	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000392543	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000392543	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000392543	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000409499	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409499	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409499	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409499	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000409499	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000392544	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000392544	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000392544	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000392544	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000392544	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000426833	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000426833	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000426833	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000426833	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000426833	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000538946	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000538946	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000538946	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000538946	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000538946	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000487334	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000487334	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000487334	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000487334	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000487334	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000409833	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409833	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409833	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000409833	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000409833	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000413123	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000413123	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000413123	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000413123	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000413123	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
intron-3CDS	ENST00000409437	ENST00000215567		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
intron-5UTR	ENST00000409437	ENST00000596073		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
intron-5UTR	ENST00000409437	ENST00000600083		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
intron-5UTR	ENST00000409437	ENST00000436007		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
intron-3UTR	ENST00000409437	ENST00000596164		TCGA	LD	LGG	TCGA-HT-8111-01A	ATF2	chr2	176032778	-	TECR	chr19	14673337	+
In-frame	ENST00000441250	ENST00000279281		TCGA	LD	LGG	TCGA-HT-8114-01A	NUDT22	chr11	63994604	+	VPS51	chr11	64876752	+
5CDS-3UTR	ENST00000441250	ENST00000527646		TCGA	LD	LGG	TCGA-HT-8114-01A	NUDT22	chr11	63994604	+	VPS51	chr11	64876752	+
In-frame	ENST00000279206	ENST00000279281		TCGA	LD	LGG	TCGA-HT-8114-01A	NUDT22	chr11	63994604	+	VPS51	chr11	64876752	+
5CDS-3UTR	ENST00000279206	ENST00000527646		TCGA	LD	LGG	TCGA-HT-8114-01A	NUDT22	chr11	63994604	+	VPS51	chr11	64876752	+
In-frame	ENST00000337019	ENST00000275262		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000337019	ENST00000392127		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000337019	ENST00000453779		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000337019	ENST00000361752		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000337019	ENST00000361195		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000337019	ENST00000424802		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366889	ENST00000275262		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366889	ENST00000392127		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366889	ENST00000453779		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366889	ENST00000361752		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366889	ENST00000361195		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366889	ENST00000424802		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366888	ENST00000275262		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366888	ENST00000392127		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366888	ENST00000453779		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366888	ENST00000361752		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366888	ENST00000361195		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
In-frame	ENST00000366888	ENST00000424802		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
3UTR-3CDS	ENST00000542669	ENST00000275262		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
3UTR-3CDS	ENST00000542669	ENST00000392127		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
3UTR-3CDS	ENST00000542669	ENST00000453779		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
3UTR-3CDS	ENST00000542669	ENST00000361752		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
3UTR-3CDS	ENST00000542669	ENST00000361195		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
3UTR-3CDS	ENST00000542669	ENST00000424802		TCGA	LD	LGG	TCGA-HT-8114-01A	PACRG	chr6	163235313	+	QKI	chr6	163899812	+
Frame-shit	ENST00000378623	ENST00000263765		TCGA	LD	LGG	TCGA-HT-8563-01A	LRP4	chr11	46894651	-	PRDM11	chr11	45226262	+
Frame-shit	ENST00000378623	ENST00000530656		TCGA	LD	LGG	TCGA-HT-8563-01A	LRP4	chr11	46894651	-	PRDM11	chr11	45226262	+
Frame-shit	ENST00000378623	ENST00000424263		TCGA	LD	LGG	TCGA-HT-8563-01A	LRP4	chr11	46894651	-	PRDM11	chr11	45226262	+
5CDS-3UTR	ENST00000378623	ENST00000528980		TCGA	LD	LGG	TCGA-HT-8563-01A	LRP4	chr11	46894651	-	PRDM11	chr11	45226262	+
intron-3CDS	ENST00000264229	ENST00000257290		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-intron	ENST00000264229	ENST00000508170		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-3CDS	ENST00000541073	ENST00000257290		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-intron	ENST00000541073	ENST00000508170		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-3CDS	ENST00000504228	ENST00000257290		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-intron	ENST00000504228	ENST00000508170		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-3CDS	ENST00000505410	ENST00000257290		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
intron-intron	ENST00000505410	ENST00000508170		TCGA	LD	LGG	TCGA-HT-A5R7-01A	KIAA1211	chr4	56915465	+	PDGFRA	chr4	55139704	+
Frame-shit	ENST00000361445	ENST00000367053		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
Frame-shit	ENST00000361445	ENST00000367052		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
Frame-shit	ENST00000361445	ENST00000367051		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
Frame-shit	ENST00000361445	ENST00000400960		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
Frame-shit	ENST00000361445	ENST00000367049		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
5CDS-3UTR	ENST00000361445	ENST00000367050		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000376838	ENST00000367053		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000376838	ENST00000367052		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000376838	ENST00000367051		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000376838	ENST00000400960		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000376838	ENST00000367049		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3UTR	ENST00000376838	ENST00000367050		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000495435	ENST00000367053		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000495435	ENST00000367052		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000495435	ENST00000367051		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000495435	ENST00000400960		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3CDS	ENST00000495435	ENST00000367049		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
intron-3UTR	ENST00000495435	ENST00000367050		TCGA	LD	LGG	TCGA-HT-A5RA-01A	MTOR	chr1	11288725	-	CR1	chr1	207684914	+
5UTR-3CDS	ENST00000427841	ENST00000512055		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SDHAP1	chr3	195698194	-	CPNE4	chr3	131404802	-
5UTR-3CDS	ENST00000427841	ENST00000429747		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SDHAP1	chr3	195698194	-	CPNE4	chr3	131404802	-
5UTR-3CDS	ENST00000427841	ENST00000512332		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SDHAP1	chr3	195698194	-	CPNE4	chr3	131404802	-
5UTR-3CDS	ENST00000427841	ENST00000511604		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SDHAP1	chr3	195698194	-	CPNE4	chr3	131404802	-
5UTR-3CDS	ENST00000427841	ENST00000502818		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SDHAP1	chr3	195698194	-	CPNE4	chr3	131404802	-
5UTR-intron	ENST00000427841	ENST00000503204		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SDHAP1	chr3	195698194	-	CPNE4	chr3	131404802	-
In-frame	ENST00000545472	ENST00000296252		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
Frame-shit	ENST00000545472	ENST00000424591		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
In-frame	ENST00000296257	ENST00000296252		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
Frame-shit	ENST00000296257	ENST00000424591		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
In-frame	ENST00000427465	ENST00000296252		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
Frame-shit	ENST00000427465	ENST00000424591		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
intron-3CDS	ENST00000465201	ENST00000296252		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
intron-3CDS	ENST00000465201	ENST00000424591		TCGA	LD	LGG	TCGA-HT-A5RA-01A	SENP2	chr3	185341870	+	LIPH	chr3	185226665	-
In-frame	ENST00000407149	ENST00000538629		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
5CDS-3UTR	ENST00000407149	ENST00000339292		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
5UTR-3CDS	ENST00000379551	ENST00000538629		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
5UTR-3UTR	ENST00000379551	ENST00000339292		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
intron-3CDS	ENST00000505123	ENST00000538629		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
intron-3UTR	ENST00000505123	ENST00000339292		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
intron-3CDS	ENST00000446965	ENST00000538629		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
intron-3UTR	ENST00000446965	ENST00000339292		TCGA	LD	LGG	TCGA-HT-A614-01A	PRR16	chr5	119800340	+	SCAMP1	chr5	77711344	+
intron-3CDS	ENST00000350881	ENST00000297540		TCGA	LD	LGG	TCGA-HT-A614-01A	THBS4	chr5	79287235	+	PHAX	chr5	125960267	+
intron-intron	ENST00000350881	ENST00000514725		TCGA	LD	LGG	TCGA-HT-A614-01A	THBS4	chr5	79287235	+	PHAX	chr5	125960267	+
intron-3CDS	ENST00000511733	ENST00000297540		TCGA	LD	LGG	TCGA-HT-A614-01A	THBS4	chr5	79287235	+	PHAX	chr5	125960267	+
intron-intron	ENST00000511733	ENST00000514725		TCGA	LD	LGG	TCGA-HT-A614-01A	THBS4	chr5	79287235	+	PHAX	chr5	125960267	+
intron-3CDS	ENST00000504720	ENST00000297540		TCGA	LD	LGG	TCGA-HT-A614-01A	THBS4	chr5	79287235	+	PHAX	chr5	125960267	+
intron-intron	ENST00000504720	ENST00000514725		TCGA	LD	LGG	TCGA-HT-A614-01A	THBS4	chr5	79287235	+	PHAX	chr5	125960267	+
In-frame	ENST00000356175	ENST00000333942		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000356175	ENST00000358365		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000356175	ENST00000583994		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000356175	ENST00000545287		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000356175	ENST00000354266		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000356175	ENST00000394692		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000356175	ENST00000581094		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
5CDS-3UTR	ENST00000356175	ENST00000580976		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000333942		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000358365		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000583994		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000545287		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000354266		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000394692		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000358273	ENST00000581094		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
5CDS-3UTR	ENST00000358273	ENST00000580976		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000333942		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000358365		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000583994		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000545287		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000354266		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000394692		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000431387	ENST00000581094		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3UTR	ENST00000431387	ENST00000580976		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000333942		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000358365		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000583994		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000545287		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000354266		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000394692		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000581113	ENST00000581094		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3UTR	ENST00000581113	ENST00000580976		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000333942		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000358365		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000583994		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000545287		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000354266		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000394692		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000417592	ENST00000581094		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3UTR	ENST00000417592	ENST00000580976		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000333942		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000358365		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000583994		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000545287		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000354266		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000394692		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3CDS	ENST00000444181	ENST00000581094		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
intron-3UTR	ENST00000444181	ENST00000580976		TCGA	LD	LGG	TCGA-HT-A617-01A	NF1	chr17	29576137	+	RHOT1	chr17	30519220	+
In-frame	ENST00000284629	ENST00000265441		TCGA	LD	LGG	TCGA-HT-A61C-01A	ASZ1	chr7	117060217	-	WNT2	chr7	116960847	-
5CDS-intron	ENST00000397752	ENST00000432541		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-5UTR	ENST00000397752	ENST00000434993		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-5UTR	ENST00000397752	ENST00000442719		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000397752	ENST00000446784		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000397752	ENST00000456577		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000397752	ENST00000433969		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000318493	ENST00000432541		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-5UTR	ENST00000318493	ENST00000434993		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-5UTR	ENST00000318493	ENST00000442719		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000318493	ENST00000446784		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000318493	ENST00000456577		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000318493	ENST00000433969		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000436117	ENST00000432541		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-5UTR	ENST00000436117	ENST00000434993		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-5UTR	ENST00000436117	ENST00000442719		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000436117	ENST00000446784		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000436117	ENST00000456577		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
5CDS-intron	ENST00000436117	ENST00000433969		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
3UTR-intron	ENST00000495962	ENST00000432541		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
3UTR-5UTR	ENST00000495962	ENST00000434993		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
3UTR-5UTR	ENST00000495962	ENST00000442719		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
3UTR-intron	ENST00000495962	ENST00000446784		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
3UTR-intron	ENST00000495962	ENST00000456577		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
3UTR-intron	ENST00000495962	ENST00000433969		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
intron-intron	ENST00000539704	ENST00000432541		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
intron-5UTR	ENST00000539704	ENST00000434993		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
intron-5UTR	ENST00000539704	ENST00000442719		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
intron-intron	ENST00000539704	ENST00000446784		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
intron-intron	ENST00000539704	ENST00000456577		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
intron-intron	ENST00000539704	ENST00000433969		TCGA	LD	LGG	TCGA-HT-A61C-01A	MET	chr7	116371913	+	ST7-AS2	chr7	116752721	-
Frame-shit	ENST00000393446	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000393446	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
5CDS-intron	ENST00000393446	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000265437	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000265437	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
5CDS-intron	ENST00000265437	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000393451	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000393451	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
5CDS-intron	ENST00000393451	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000393449	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000393449	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
5CDS-intron	ENST00000393449	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000323984	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
Frame-shit	ENST00000323984	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
5CDS-intron	ENST00000323984	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000432298	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000432298	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000432298	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000422922	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000422922	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000422922	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000487459	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000487459	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000487459	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000393443	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000393443	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000393443	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000393447	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000393447	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000393447	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000393444	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000393444	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000393444	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000465133	ENST00000003084		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000465133	ENST00000454343		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
intron-intron	ENST00000465133	ENST00000608965		TCGA	LD	LGG	TCGA-HT-A61C-01A	ST7	chr7	116593745	+	CFTR	chr7	117199518	+
In-frame	ENST00000265441	ENST00000393446		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
In-frame	ENST00000265441	ENST00000265437		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
In-frame	ENST00000265441	ENST00000393451		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
In-frame	ENST00000265441	ENST00000393449		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
In-frame	ENST00000265441	ENST00000323984		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
In-frame	ENST00000265441	ENST00000432298		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
In-frame	ENST00000265441	ENST00000422922		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000265441	ENST00000487459		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000265441	ENST00000393443		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000265441	ENST00000393447		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000265441	ENST00000393444		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
5CDS-3UTR	ENST00000265441	ENST00000465133		TCGA	LD	LGG	TCGA-HT-A61C-01A	WNT2	chr7	116937666	-	ST7	chr7	116739816	+
Frame-shit	ENST00000397906	ENST00000402357		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000397906	ENST00000358295		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000397906	ENST00000473898		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000397906	ENST00000406880		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000490475	ENST00000402357		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000490475	ENST00000358295		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
intron-intron	ENST00000490475	ENST00000473898		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
intron-intron	ENST00000490475	ENST00000406880		TCGA	LD	LGG	TCGA-HT-A74H-01A	TTC28	chr22	29025540	-	FAM19A5	chr22	49042409	+
In-frame	ENST00000343053	ENST00000342129		TCGA	LD	LGG	TCGA-HT-A74J-01A	NELFB	chr9	140151506	+	EXD3	chr9	140218595	-
In-frame	ENST00000343053	ENST00000340951		TCGA	LD	LGG	TCGA-HT-A74J-01A	NELFB	chr9	140151506	+	EXD3	chr9	140218595	-
5CDS-intron	ENST00000343053	ENST00000479452		TCGA	LD	LGG	TCGA-HT-A74J-01A	NELFB	chr9	140151506	+	EXD3	chr9	140218595	-
5CDS-intron	ENST00000343053	ENST00000475006		TCGA	LD	LGG	TCGA-HT-A74J-01A	NELFB	chr9	140151506	+	EXD3	chr9	140218595	-
5CDS-intron	ENST00000343053	ENST00000465160		TCGA	LD	LGG	TCGA-HT-A74J-01A	NELFB	chr9	140151506	+	EXD3	chr9	140218595	-
Frame-shit	ENST00000349048	ENST00000291582		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
5CDS-3UTR	ENST00000349048	ENST00000329347		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
5CDS-3UTR	ENST00000349048	ENST00000355347		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
intron-3CDS	ENST00000403390	ENST00000291582		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
intron-3UTR	ENST00000403390	ENST00000329347		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
intron-3UTR	ENST00000403390	ENST00000355347		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
3UTR-3CDS	ENST00000496824	ENST00000291582		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
3UTR-3UTR	ENST00000496824	ENST00000329347		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
3UTR-3UTR	ENST00000496824	ENST00000355347		TCGA	LD	LGG	TCGA-HW-7490-01A	PFKL	chr21	45720073	+	AIRE	chr21	45717539	+
intron-3UTR	ENST00000404233	ENST00000474751		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000404233	ENST00000409991		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000404233	ENST00000292199		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000404233	ENST00000409265		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000404233	ENST00000409109		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000404233	ENST00000525863		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-3UTR	ENST00000529972	ENST00000474751		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000529972	ENST00000409991		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000529972	ENST00000292199		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000529972	ENST00000409265		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000529972	ENST00000409109		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000529972	ENST00000525863		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-3UTR	ENST00000525859	ENST00000474751		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000525859	ENST00000409991		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000525859	ENST00000292199		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000525859	ENST00000409265		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000525859	ENST00000409109		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000525859	ENST00000525863		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-3UTR	ENST00000543287	ENST00000474751		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000543287	ENST00000409991		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000543287	ENST00000292199		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000543287	ENST00000409265		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000543287	ENST00000409109		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000543287	ENST00000525863		TCGA	LD	LGG	TCGA-HW-8321-01A	HYOU1	chr11	118915839	-	NLRX1	chr11	119042065	+
Frame-shit	ENST00000313056	ENST00000392325		TCGA	LD	LGG	TCGA-HW-8321-01A	OGFOD3	chr17	80369331	-	WDR45B	chr17	80585167	-
5CDS-5UTR	ENST00000313056	ENST00000571835		TCGA	LD	LGG	TCGA-HW-8321-01A	OGFOD3	chr17	80369331	-	WDR45B	chr17	80585167	-
In-frame	ENST00000329197	ENST00000392325		TCGA	LD	LGG	TCGA-HW-8321-01A	OGFOD3	chr17	80369331	-	WDR45B	chr17	80585167	-
5CDS-5UTR	ENST00000329197	ENST00000571835		TCGA	LD	LGG	TCGA-HW-8321-01A	OGFOD3	chr17	80369331	-	WDR45B	chr17	80585167	-
intron-3CDS	ENST00000578287	ENST00000392325		TCGA	LD	LGG	TCGA-HW-8321-01A	OGFOD3	chr17	80369331	-	WDR45B	chr17	80585167	-
intron-5UTR	ENST00000578287	ENST00000571835		TCGA	LD	LGG	TCGA-HW-8321-01A	OGFOD3	chr17	80369331	-	WDR45B	chr17	80585167	-
Frame-shit	ENST00000392325	ENST00000313056		TCGA	LD	LGG	TCGA-HW-8321-01A	WDR45B	chr17	80601825	-	OGFOD3	chr17	80373503	-
Frame-shit	ENST00000392325	ENST00000329197		TCGA	LD	LGG	TCGA-HW-8321-01A	WDR45B	chr17	80601825	-	OGFOD3	chr17	80373503	-
5CDS-intron	ENST00000392325	ENST00000578287		TCGA	LD	LGG	TCGA-HW-8321-01A	WDR45B	chr17	80601825	-	OGFOD3	chr17	80373503	-
intron-3CDS	ENST00000571835	ENST00000313056		TCGA	LD	LGG	TCGA-HW-8321-01A	WDR45B	chr17	80601825	-	OGFOD3	chr17	80373503	-
intron-3CDS	ENST00000571835	ENST00000329197		TCGA	LD	LGG	TCGA-HW-8321-01A	WDR45B	chr17	80601825	-	OGFOD3	chr17	80373503	-
intron-intron	ENST00000571835	ENST00000578287		TCGA	LD	LGG	TCGA-HW-8321-01A	WDR45B	chr17	80601825	-	OGFOD3	chr17	80373503	-
5CDS-3UTR	ENST00000268459	ENST00000526417		TCGA	LD	LGG	TCGA-HW-8322-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
5CDS-3UTR	ENST00000268459	ENST00000300589		TCGA	LD	LGG	TCGA-HW-8322-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3UTR	ENST00000564336	ENST00000526417		TCGA	LD	LGG	TCGA-HW-8322-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
intron-3UTR	ENST00000564336	ENST00000300589		TCGA	LD	LGG	TCGA-HW-8322-01A	NKD1	chr16	50666318	+	NOD2	chr16	50741765	+
5UTR-3CDS	ENST00000395715	ENST00000523492		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000395715	ENST00000286234		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000395715	ENST00000518057		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000220888	ENST00000523492		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000220888	ENST00000286234		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000220888	ENST00000518057		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000519076	ENST00000523492		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000519076	ENST00000286234		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000519076	ENST00000518057		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000520276	ENST00000523492		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000520276	ENST00000286234		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000520276	ENST00000518057		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000519674	ENST00000523492		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000519674	ENST00000286234		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000519674	ENST00000518057		TCGA	LD	LGG	TCGA-HW-A5KK-01A	TRPS1	chr8	116680772	-	DEPTOR	chr8	121061815	+
In-frame	ENST00000261674	ENST00000310903		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
In-frame	ENST00000261674	ENST00000431443		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
5CDS-3UTR	ENST00000261674	ENST00000542883		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
In-frame	ENST00000541286	ENST00000310903		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
In-frame	ENST00000541286	ENST00000431443		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
5CDS-3UTR	ENST00000541286	ENST00000542883		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
intron-3CDS	ENST00000539506	ENST00000310903		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
intron-3CDS	ENST00000539506	ENST00000431443		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
intron-3UTR	ENST00000539506	ENST00000542883		TCGA	LD	LGG	TCGA-HW-A5KL-01A	SFSWAP	chr12	132250853	+	MYO1H	chr12	109845599	+
In-frame	ENST00000262367	ENST00000567107		TCGA	LD	LGG	TCGA-KT-A7W1-01A	CREBBP	chr16	3900298	-	GOLGA6L2	chr15	23690585	-
5CDS-5UTR	ENST00000262367	ENST00000345070		TCGA	LD	LGG	TCGA-KT-A7W1-01A	CREBBP	chr16	3900298	-	GOLGA6L2	chr15	23690585	-
5CDS-5UTR	ENST00000262367	ENST00000312015		TCGA	LD	LGG	TCGA-KT-A7W1-01A	CREBBP	chr16	3900298	-	GOLGA6L2	chr15	23690585	-
In-frame	ENST00000382070	ENST00000567107		TCGA	LD	LGG	TCGA-KT-A7W1-01A	CREBBP	chr16	3900298	-	GOLGA6L2	chr15	23690585	-
5CDS-5UTR	ENST00000382070	ENST00000345070		TCGA	LD	LGG	TCGA-KT-A7W1-01A	CREBBP	chr16	3900298	-	GOLGA6L2	chr15	23690585	-
5CDS-5UTR	ENST00000382070	ENST00000312015		TCGA	LD	LGG	TCGA-KT-A7W1-01A	CREBBP	chr16	3900298	-	GOLGA6L2	chr15	23690585	-
Frame-shit	ENST00000407010	ENST00000262041		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ISPD	chr7	16255691	-	MEOX2	chr7	15666543	-
Frame-shit	ENST00000399310	ENST00000262041		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ISPD	chr7	16255691	-	MEOX2	chr7	15666543	-
intron-3CDS	ENST00000479493	ENST00000262041		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ISPD	chr7	16255691	-	MEOX2	chr7	15666543	-
intron-3CDS	ENST00000588267	ENST00000397661		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000592199		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000587760		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000585575		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000360105		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000588228		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000587260		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000588267	ENST00000358552		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000588267	ENST00000588680		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000397661		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000592199		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000587760		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000585575		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000360105		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000588228		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000587260		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592859	ENST00000358552		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000592859	ENST00000588680		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000397661		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000592199		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000587760		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000585575		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000360105		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000588228		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000587260		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000586293	ENST00000358552		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000586293	ENST00000588680		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000397661		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000592199		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000587760		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000585575		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000360105		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000588228		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000587260		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000397902	ENST00000358552		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000397902	ENST00000588680		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000397661		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000592199		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000587760		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000585575		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000360105		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000588228		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000587260		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589038	ENST00000358552		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000589038	ENST00000588680		TCGA	LD	LGG	TCGA-P5-A5EU-01A	ZNF846	chr19	9896614	-	NFIX	chr19	13183861	+
5CDS-3UTR	ENST00000535772	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000535772	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000535772	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000344290	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000344290	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000351559	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000351559	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000347967	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000347967	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000262410	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000262410	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000340799	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000340799	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000570299	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000570299	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000334239	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000334239	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000446361	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000446361	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000574436	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000574436	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000431008	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000431008	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000571987	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000571987	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000420682	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000420682	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000415613	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000415613	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000465846		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000476204		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000474040		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000467155		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000480872		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000429755		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000492897		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000487849		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000481995		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000460041		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000474324		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-3UTR	ENST00000576518	ENST00000477144		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000466037		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000491264		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000576518	ENST00000494420		TCGA	LD	LGG	TCGA-P5-A5EV-01A	MAPT	chr17	44096096	+	HOXB-AS3	chr17	46677809	+
5CDS-intron	ENST00000382952	ENST00000545951		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000382839		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000324666		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000502458		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000505311		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000545951		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000382839		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000324666		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000502458		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000505311		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000545951		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000382839		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000324666		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000502458		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000505311		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000545951		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000382839		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000324666		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000502458		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000505311		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	FAM193A	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000314289		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000541204		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000509258		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000511843		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000511859		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000506706		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000382952	ENST00000511600		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000314289		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000541204		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000509258		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000511843		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000511859		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000506706		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5CDS-intron	ENST00000290921	ENST00000511600		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000314289		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000541204		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000509258		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000511843		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000511859		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000506706		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
intron-intron	ENST00000510568	ENST00000511600		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000314289		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000541204		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000509258		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000511843		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000511859		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000506706		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
5UTR-intron	ENST00000515690	ENST00000511600		TCGA	LD	LGG	TCGA-P5-A5EZ-01A	CTBP1	chr4	1231971	-	RNF4	chr4	2626989	+
Frame-shit	ENST00000262570	ENST00000507606		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
5CDS-intron	ENST00000262570	ENST00000422968		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
Frame-shit	ENST00000448878	ENST00000507606		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
5CDS-intron	ENST00000448878	ENST00000422968		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
5UTR-3CDS	ENST00000476546	ENST00000507606		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
5UTR-intron	ENST00000476546	ENST00000422968		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
Frame-shit	ENST00000542753	ENST00000507606		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
5CDS-intron	ENST00000542753	ENST00000422968		TCGA	LD	LGG	TCGA-P5-A72U-01A	CHCHD3	chr7	132709306	-	C7orf73	chr7	135357501	+
In-frame	ENST00000313288	ENST00000481110		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
Frame-shit	ENST00000313288	ENST00000440486		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
Frame-shit	ENST00000313288	ENST00000412135		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
Frame-shit	ENST00000313288	ENST00000340107		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
Frame-shit	ENST00000313288	ENST00000260795		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
Frame-shit	ENST00000313288	ENST00000352904		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
5CDS-intron	ENST00000313288	ENST00000474521		TCGA	LD	LGG	TCGA-P5-A72U-01A	TACC3	chr4	1737035	+	FGFR3	chr4	1808585	+
intron-3CDS	ENST00000342350	ENST00000253407		TCGA	LD	LGG	TCGA-QH-A65X-01A	DCAKD	chr17	43101679	-	C1QL1	chr17	43037661	-
In-frame	ENST00000588499	ENST00000253407		TCGA	LD	LGG	TCGA-QH-A65X-01A	DCAKD	chr17	43101679	-	C1QL1	chr17	43037661	-
intron-3CDS	ENST00000588295	ENST00000253407		TCGA	LD	LGG	TCGA-QH-A65X-01A	DCAKD	chr17	43101679	-	C1QL1	chr17	43037661	-
intron-3CDS	ENST00000310604	ENST00000253407		TCGA	LD	LGG	TCGA-QH-A65X-01A	DCAKD	chr17	43101679	-	C1QL1	chr17	43037661	-
intron-3CDS	ENST00000452796	ENST00000253407		TCGA	LD	LGG	TCGA-QH-A65X-01A	DCAKD	chr17	43101679	-	C1QL1	chr17	43037661	-
Frame-shit	ENST00000316403	ENST00000261313		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000316403	ENST00000542939		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
In-frame	ENST00000546343	ENST00000261313		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000546343	ENST00000542939		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
In-frame	ENST00000560366	ENST00000261313		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000560366	ENST00000542939		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
Frame-shit	ENST00000405140	ENST00000261313		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000405140	ENST00000542939		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
In-frame	ENST00000523500	ENST00000261313		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000523500	ENST00000542939		TCGA	LD	LGG	TCGA-QH-A6CS-01A	CLU	chr8	27457297	-	PEBP1	chr12	118575844	+
5CDS-3UTR	ENST00000405995	ENST00000529540		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000395397		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000405576		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000481889		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000407404		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000441012		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000467728		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000405853		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000405995	ENST00000527949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000529540		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000395397		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000405576		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000481889		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000407404		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000441012		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000467728		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000405853		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000357304	ENST00000527949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000529540		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000395397		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000405576		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000481889		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000407404		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000441012		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000467728		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000405853		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
5CDS-3UTR	ENST00000458550	ENST00000527949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000529540		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000395397		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000405576		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000481889		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000407404		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000441012		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000467728		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000405853		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000372249	ENST00000527949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000529540		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000395397		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000405576		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000481889		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000407404		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000441012		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000467728		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000405853		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
intron-3UTR	ENST00000465931	ENST00000527949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	PRRC2B	chr9	134319715	+	NR1H3	chr11	47282792	+
In-frame	ENST00000393328	ENST00000430580		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393328	ENST00000420031		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393328	ENST00000432949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393328	ENST00000287968		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393328	ENST00000599908		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
Frame-shit	ENST00000393331	ENST00000430580		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393331	ENST00000420031		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393331	ENST00000432949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393331	ENST00000287968		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000393331	ENST00000599908		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
Frame-shit	ENST00000347630	ENST00000430580		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000347630	ENST00000420031		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000347630	ENST00000432949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000347630	ENST00000287968		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000347630	ENST00000599908		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
Frame-shit	ENST00000504102	ENST00000430580		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000504102	ENST00000420031		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000504102	ENST00000432949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000504102	ENST00000287968		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000504102	ENST00000599908		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
In-frame	ENST00000503676	ENST00000430580		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000503676	ENST00000420031		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000503676	ENST00000432949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000503676	ENST00000287968		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
5CDS-intron	ENST00000503676	ENST00000599908		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
intron-3CDS	ENST00000513080	ENST00000430580		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
intron-intron	ENST00000513080	ENST00000420031		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
intron-intron	ENST00000513080	ENST00000432949		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
intron-intron	ENST00000513080	ENST00000287968		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
intron-intron	ENST00000513080	ENST00000599908		TCGA	LD	LGG	TCGA-QH-A6CV-01A	SPOP	chr17	47688642	-	NBPF1	chr1	16890681	-
In-frame	ENST00000305557	ENST00000290536		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
In-frame	ENST00000305557	ENST00000409585		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
In-frame	ENST00000305557	ENST00000536235		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
5CDS-5UTR	ENST00000305557	ENST00000358434		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
5CDS-intron	ENST00000305557	ENST00000464686		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000272430	ENST00000290536		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000272430	ENST00000409585		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000272430	ENST00000536235		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-5UTR	ENST00000272430	ENST00000358434		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-intron	ENST00000272430	ENST00000464686		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000233330	ENST00000290536		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000233330	ENST00000409585		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000233330	ENST00000536235		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-5UTR	ENST00000233330	ENST00000358434		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-intron	ENST00000233330	ENST00000464686		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000484453	ENST00000290536		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000484453	ENST00000409585		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-3CDS	ENST00000484453	ENST00000536235		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-5UTR	ENST00000484453	ENST00000358434		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
intron-intron	ENST00000484453	ENST00000464686		TCGA	LD	LGG	TCGA-QH-A6CW-01A	RTKN	chr2	74666678	-	M1AP	chr2	74834350	-
5CDS-intron	ENST00000262316	ENST00000399951		TCGA	LD	LGG	TCGA-QH-A6CX-01A	RHBDF1	chr16	111383	-	NPRL3	chr16	188843	-
5CDS-intron	ENST00000262316	ENST00000399953		TCGA	LD	LGG	TCGA-QH-A6CX-01A	RHBDF1	chr16	111383	-	NPRL3	chr16	188843	-
5CDS-5UTR	ENST00000262316	ENST00000405960		TCGA	LD	LGG	TCGA-QH-A6CX-01A	RHBDF1	chr16	111383	-	NPRL3	chr16	188843	-
intron-intron	ENST00000454039	ENST00000399951		TCGA	LD	LGG	TCGA-QH-A6CX-01A	RHBDF1	chr16	111383	-	NPRL3	chr16	188843	-
intron-intron	ENST00000454039	ENST00000399953		TCGA	LD	LGG	TCGA-QH-A6CX-01A	RHBDF1	chr16	111383	-	NPRL3	chr16	188843	-
intron-5UTR	ENST00000454039	ENST00000405960		TCGA	LD	LGG	TCGA-QH-A6CX-01A	RHBDF1	chr16	111383	-	NPRL3	chr16	188843	-
Frame-shit	ENST00000544440	ENST00000326291		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
5CDS-3UTR	ENST00000544440	ENST00000489922		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
Frame-shit	ENST00000407578	ENST00000326291		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
5CDS-3UTR	ENST00000407578	ENST00000489922		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
Frame-shit	ENST00000357337	ENST00000326291		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
5CDS-3UTR	ENST00000357337	ENST00000489922		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
5UTR-3CDS	ENST00000360084	ENST00000326291		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
5UTR-3UTR	ENST00000360084	ENST00000489922		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
intron-3CDS	ENST00000482517	ENST00000326291		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
intron-3UTR	ENST00000482517	ENST00000489922		TCGA	LD	LGG	TCGA-QH-A6X9-01A	MYCBP2	chr13	77730193	-	PIBF1	chr13	73547729	+
intron-3CDS	ENST00000264434	ENST00000379666		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3CDS	ENST00000264434	ENST00000296102		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3UTR	ENST00000264434	ENST00000483992		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3CDS	ENST00000420306	ENST00000379666		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3CDS	ENST00000420306	ENST00000296102		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
intron-3UTR	ENST00000420306	ENST00000483992		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
5UTR-3CDS	ENST00000470096	ENST00000379666		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
5UTR-3CDS	ENST00000470096	ENST00000296102		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
5UTR-3UTR	ENST00000470096	ENST00000483992		TCGA	LD	LGG	TCGA-QH-A6XC-01A	C2orf42	chr2	70475537	-	MRPL33	chr2	28002300	+
5UTR-3CDS	ENST00000233557	ENST00000511367		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000233557	ENST00000442743		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000233557	ENST00000344624		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000233557	ENST00000513349		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-intron	ENST00000233557	ENST00000504361		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379852	ENST00000511367		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379852	ENST00000442743		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379852	ENST00000344624		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379852	ENST00000513349		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-intron	ENST00000379852	ENST00000504361		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379863	ENST00000511367		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379863	ENST00000442743		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379863	ENST00000344624		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-3CDS	ENST00000379863	ENST00000513349		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
5UTR-intron	ENST00000379863	ENST00000504361		TCGA	LD	LGG	TCGA-QH-A6XC-01A	NRBP1	chr2	27651598	+	DROSHA	chr5	31410994	-
intron-3CDS	ENST00000378518	ENST00000409063		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-3CDS	ENST00000378518	ENST00000312428		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-intron	ENST00000378518	ENST00000410072		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-intron	ENST00000378518	ENST00000484183		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-3CDS	ENST00000605895	ENST00000409063		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-3CDS	ENST00000605895	ENST00000312428		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-intron	ENST00000605895	ENST00000410072		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-intron	ENST00000605895	ENST00000484183		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-3CDS	ENST00000378513	ENST00000409063		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-3CDS	ENST00000378513	ENST00000312428		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-intron	ENST00000378513	ENST00000410072		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-intron	ENST00000378513	ENST00000484183		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-3CDS	ENST00000378512	ENST00000409063		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-3CDS	ENST00000378512	ENST00000312428		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-intron	ENST00000378512	ENST00000410072		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
3UTR-intron	ENST00000378512	ENST00000484183		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-3CDS	ENST00000488353	ENST00000409063		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-3CDS	ENST00000488353	ENST00000312428		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-intron	ENST00000488353	ENST00000410072		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
intron-intron	ENST00000488353	ENST00000484183		TCGA	LD	LGG	TCGA-QH-A6XC-01A	RER1	chr1	2335028	+	DNAH7	chr2	196621009	-
Frame-shit	ENST00000302538	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LGG	TCGA-RY-A847-01A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000283928	ENST00000465846		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000476204		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000474040		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-3UTR	ENST00000283928	ENST00000467155		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000480872		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000429755		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000492897		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-3UTR	ENST00000283928	ENST00000487849		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000481995		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000460041		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000474324		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-intron	ENST00000283928	ENST00000477144		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-3UTR	ENST00000283928	ENST00000466037		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-3UTR	ENST00000283928	ENST00000491264		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5CDS-3UTR	ENST00000283928	ENST00000494420		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000465846		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000476204		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000474040		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-3UTR	ENST00000466516	ENST00000467155		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000480872		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000429755		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000492897		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-3UTR	ENST00000466516	ENST00000487849		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000481995		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000460041		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000474324		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-intron	ENST00000466516	ENST00000477144		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-3UTR	ENST00000466516	ENST00000466037		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-3UTR	ENST00000466516	ENST00000491264		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
intron-3UTR	ENST00000466516	ENST00000494420		TCGA	LD	LGG	TCGA-S9-A6TS-01A	JAZF1	chr7	28031528	-	HOXB-AS3	chr17	46681289	+
5UTR-5UTR	ENST00000328090	ENST00000381602		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000397962		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000309776		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000509513		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000397959		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000381591		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000403354		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000381607		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000402736		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000602682		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000381604		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000381584		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000558098		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-5UTR	ENST00000328090	ENST00000545619		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-intron	ENST00000328090	ENST00000535374		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5UTR-intron	ENST00000328090	ENST00000473115		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000381602		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000397962		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000309776		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000509513		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000397959		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000381591		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000403354		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000381607		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000402736		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000602682		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000381604		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000381584		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000558098		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-5UTR	ENST00000463468	ENST00000545619		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-intron	ENST00000463468	ENST00000535374		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
intron-intron	ENST00000463468	ENST00000473115		TCGA	LD	LGG	TCGA-S9-A6TU-01A	FAM208B	chr10	5727138	+	ZMYND11	chr10	255829	+
5CDS-intron	ENST00000358024	ENST00000555545		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000358024	ENST00000261245		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000358024	ENST00000539616		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000545499	ENST00000555545		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000545499	ENST00000261245		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000545499	ENST00000539616		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
3UTR-intron	ENST00000495538	ENST00000555545		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
3UTR-intron	ENST00000495538	ENST00000261245		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
3UTR-intron	ENST00000495538	ENST00000539616		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000330675	ENST00000555545		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000330675	ENST00000261245		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000330675	ENST00000539616		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000329800	ENST00000555545		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000329800	ENST00000261245		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
intron-intron	ENST00000329800	ENST00000539616		TCGA	LD	LGG	TCGA-S9-A6TY-01A	TMCC2	chr1	205211172	+	MNAT1	chr14	61262935	+
5CDS-intron	ENST00000458225	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000458225	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000458225	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000458225	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000458225	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000458225	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000458225	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000337271	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000337271	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000337271	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000337271	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000337271	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000337271	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000337271	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000444190	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000444190	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000444190	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000444190	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000444190	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000444190	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000444190	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000187397	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000187397	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000187397	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000187397	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000187397	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000187397	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000187397	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000417925	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000417925	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000417925	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000417925	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000417925	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000417925	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000417925	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000428373	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000428373	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000428373	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000428373	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000428373	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000428373	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000428373	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000427542	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000427542	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000427542	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000427542	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000427542	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000427542	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000427542	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000474696	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000474696	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000474696	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000474696	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000474696	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000474696	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000474696	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000412048	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000412048	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000412048	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000412048	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000412048	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000412048	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000412048	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396482	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396482	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396482	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396482	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000396482	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396482	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396482	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000432682	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000432682	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000432682	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000432682	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000432682	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000432682	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000432682	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396481	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396481	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396481	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396481	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000396481	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396481	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000396481	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000441454	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000441454	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000441454	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000441454	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000441454	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000441454	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000441454	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000436702	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000436702	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000436702	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000436702	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000436702	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000436702	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000436702	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000438071	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000438071	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000438071	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000438071	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-3UTR	ENST00000438071	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000438071	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
5CDS-intron	ENST00000438071	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-intron	ENST00000476052	ENST00000358621		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-intron	ENST00000476052	ENST00000357447		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-intron	ENST00000476052	ENST00000378503		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-intron	ENST00000476052	ENST00000342409		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-3UTR	ENST00000476052	ENST00000493380		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-intron	ENST00000476052	ENST00000475141		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
intron-intron	ENST00000476052	ENST00000492155		TCGA	LD	LGG	TCGA-S9-A6U6-01A	ARPP21	chr3	35725307	+	FRMD4A	chr10	14125812	-
Frame-shit	ENST00000355849	ENST00000205636		TCGA	LD	LGG	TCGA-S9-A6U6-01A	KHDRBS3	chr8	136569830	+	CMTM6	chr3	32529528	-
intron-3CDS	ENST00000520981	ENST00000205636		TCGA	LD	LGG	TCGA-S9-A6U6-01A	KHDRBS3	chr8	136569830	+	CMTM6	chr3	32529528	-
intron-3CDS	ENST00000522578	ENST00000205636		TCGA	LD	LGG	TCGA-S9-A6U6-01A	KHDRBS3	chr8	136569830	+	CMTM6	chr3	32529528	-
Frame-shit	ENST00000351698	ENST00000446856		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
Frame-shit	ENST00000351698	ENST00000264758		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
Frame-shit	ENST00000351698	ENST00000398125		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
In-frame	ENST00000351698	ENST00000513328		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
Frame-shit	ENST00000351698	ENST00000503455		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
Frame-shit	ENST00000351698	ENST00000355842		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
Frame-shit	ENST00000351698	ENST00000398123		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
In-frame	ENST00000351698	ENST00000398129		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
5CDS-intron	ENST00000351698	ENST00000538860		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000446856		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000264758		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000398125		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000513328		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000503455		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000355842		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000398123		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-3CDS	ENST00000473084	ENST00000398129		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
intron-intron	ENST00000473084	ENST00000538860		TCGA	LD	LGG	TCGA-S9-A6U9-01A	TOR1A	chr9	132580799	-	ADD1	chr4	2929898	+
Frame-shit	ENST00000543155	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000543155	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000542150	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000542150	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000229251	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000229251	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000539735	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000539735	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
intron-3CDS	ENST00000538410	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
intron-3CDS	ENST00000538410	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000534947	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000534947	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000534877	ENST00000229264		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
Frame-shit	ENST00000534877	ENST00000435982		TCGA	LD	LGG	TCGA-S9-A6UA-01A	COPS7A	chr12	6839986	+	GNB3	chr12	6954750	+
5UTR-3CDS	ENST00000262244	ENST00000341998		TCGA	LD	LGG	TCGA-S9-A6UA-01A	MOB3B	chr9	27529553	-	SLC24A2	chr9	19622297	-
5UTR-3CDS	ENST00000262244	ENST00000286344		TCGA	LD	LGG	TCGA-S9-A6UA-01A	MOB3B	chr9	27529553	-	SLC24A2	chr9	19622297	-
intron-3CDS	ENST00000603061	ENST00000341998		TCGA	LD	LGG	TCGA-S9-A6UA-01A	MOB3B	chr9	27529553	-	SLC24A2	chr9	19622297	-
intron-3CDS	ENST00000603061	ENST00000286344		TCGA	LD	LGG	TCGA-S9-A6UA-01A	MOB3B	chr9	27529553	-	SLC24A2	chr9	19622297	-
Frame-shit	ENST00000304062	ENST00000314167		TCGA	LD	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	844872	-
Frame-shit	ENST00000304062	ENST00000511163		TCGA	LD	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	844872	-
5CDS-5UTR	ENST00000304062	ENST00000509566		TCGA	LD	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	844872	-
Frame-shit	ENST00000505203	ENST00000314167		TCGA	LD	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	844872	-
Frame-shit	ENST00000505203	ENST00000511163		TCGA	LD	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	844872	-
5CDS-5UTR	ENST00000505203	ENST00000509566		TCGA	LD	LGG	TCGA-S9-A6WE-01A	CPLX1	chr4	818280	-	GAK	chr4	844872	-
Frame-shit	ENST00000397170	ENST00000287647		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000397170	ENST00000383807		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
In-frame	ENST00000397170	ENST00000383806		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000397170	ENST00000419585		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000397170	ENST00000431693		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000397170	ENST00000438741		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000383811	ENST00000287647		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000383811	ENST00000383807		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
In-frame	ENST00000383811	ENST00000383806		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000383811	ENST00000419585		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000383811	ENST00000431693		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000383811	ENST00000438741		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000452070	ENST00000287647		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000452070	ENST00000383807		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
In-frame	ENST00000452070	ENST00000383806		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000452070	ENST00000419585		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000452070	ENST00000431693		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000452070	ENST00000438741		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000326434	ENST00000287647		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000326434	ENST00000383807		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
In-frame	ENST00000326434	ENST00000383806		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
Frame-shit	ENST00000326434	ENST00000419585		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000326434	ENST00000431693		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000326434	ENST00000438741		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
3UTR-3CDS	ENST00000489674	ENST00000287647		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
3UTR-3CDS	ENST00000489674	ENST00000383807		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
3UTR-3CDS	ENST00000489674	ENST00000383806		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
3UTR-3CDS	ENST00000489674	ENST00000419585		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
3UTR-intron	ENST00000489674	ENST00000431693		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
3UTR-intron	ENST00000489674	ENST00000438741		TCGA	LD	LGG	TCGA-S9-A6WM-01A	CRELD1	chr3	9985199	+	FANCD2	chr3	10133865	+
5CDS-intron	ENST00000455089	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000455089	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000455089	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000455089	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000455089	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000455089	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000342916	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000342916	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000342916	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000342916	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000342916	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000342916	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000344576	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000344576	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000344576	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000344576	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000344576	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000344576	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000420316	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000420316	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000420316	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000420316	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000420316	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000420316	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000275493	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000275493	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000275493	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000275493	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000275493	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000275493	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000442591	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000442591	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000442591	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000442591	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000442591	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000442591	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000463948	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000463948	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000463948	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000463948	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-intron	ENST00000463948	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
intron-3UTR	ENST00000463948	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000454757	ENST00000302287		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000454757	ENST00000407838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000454757	ENST00000404951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000454757	ENST00000402026		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000454757	ENST00000402613		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-3UTR	ENST00000454757	ENST00000498834		TCGA	LD	LGG	TCGA-S9-A6WM-01A	EGFR	chr7	55270318	+	VSTM2A	chr7	54636824	+
5CDS-intron	ENST00000416858	ENST00000607838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000591724		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000332065		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000589210		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000335146		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000467929		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000405575		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000411744		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000416858	ENST00000406660		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000607838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000591724		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000332065		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000589210		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000335146		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000467929		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000405575		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000411744		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000402418	ENST00000406660		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000607838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000591724		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000332065		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000589210		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000335146		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000467929		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000405575		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000411744		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000442286	ENST00000406660		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000607838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000591724		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000332065		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000589210		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000335146		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000467929		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000405575		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000411744		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000320362	ENST00000406660		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000607838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000591724		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000332065		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000589210		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000335146		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000467929		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000405575		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000411744		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
5CDS-intron	ENST00000580994	ENST00000406660		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000607838		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000591724		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000332065		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000589210		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000335146		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000467929		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000405575		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000411744		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
intron-intron	ENST00000375261	ENST00000406660		TCGA	LD	LGG	TCGA-S9-A6WM-01A	SLC25A19	chr17	73279504	-	EXOC7	chr17	74116535	-
In-frame	ENST00000393792	ENST00000311086		TCGA	LD	LGG	TCGA-S9-A6WM-01A	UBTD2	chr5	171710600	-	BOD1	chr5	173040258	-
In-frame	ENST00000393792	ENST00000285908		TCGA	LD	LGG	TCGA-S9-A6WM-01A	UBTD2	chr5	171710600	-	BOD1	chr5	173040258	-
5CDS-intron	ENST00000393792	ENST00000480951		TCGA	LD	LGG	TCGA-S9-A6WM-01A	UBTD2	chr5	171710600	-	BOD1	chr5	173040258	-
5CDS-5UTR	ENST00000393792	ENST00000471339		TCGA	LD	LGG	TCGA-S9-A6WM-01A	UBTD2	chr5	171710600	-	BOD1	chr5	173040258	-
5CDS-intron	ENST00000339282	ENST00000592864		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000339282	ENST00000360228		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000339282	ENST00000573710		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000339282	ENST00000574822		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000416136	ENST00000592864		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000416136	ENST00000360228		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000416136	ENST00000573710		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-intron	ENST00000416136	ENST00000574822		TCGA	LD	LGG	TCGA-S9-A6WM-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13397780	-
5CDS-5UTR	ENST00000242728	ENST00000541632		TCGA	LD	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18296227	-
5CDS-intron	ENST00000242728	ENST00000229002		TCGA	LD	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18296227	-
5CDS-intron	ENST00000242728	ENST00000538724		TCGA	LD	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18296227	-
5CDS-intron	ENST00000242728	ENST00000536890		TCGA	LD	LGG	TCGA-S9-A6WO-01A	BHLHE41	chr12	26277651	-	RERGL	chr12	18296227	-
5CDS-5UTR	ENST00000306888	ENST00000382120		TCGA	LD	LGG	TCGA-S9-A7IS-01A	LNX1	chr4	54424041	-	SOD3	chr4	24801128	+
intron-5UTR	ENST00000263925	ENST00000382120		TCGA	LD	LGG	TCGA-S9-A7IS-01A	LNX1	chr4	54424041	-	SOD3	chr4	24801128	+
intron-5UTR	ENST00000504605	ENST00000382120		TCGA	LD	LGG	TCGA-S9-A7IS-01A	LNX1	chr4	54424041	-	SOD3	chr4	24801128	+
Frame-shit	ENST00000251775	ENST00000396556		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
Frame-shit	ENST00000251775	ENST00000438237		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
5CDS-intron	ENST00000251775	ENST00000467647		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
Frame-shit	ENST00000536067	ENST00000396556		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
Frame-shit	ENST00000536067	ENST00000438237		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
5CDS-intron	ENST00000536067	ENST00000467647		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
5UTR-3CDS	ENST00000473417	ENST00000396556		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
5UTR-3CDS	ENST00000473417	ENST00000438237		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
5UTR-intron	ENST00000473417	ENST00000467647		TCGA	LD	LGG	TCGA-S9-A7J0-01A	SNX4	chr3	125216185	-	OSBPL10	chr3	31921322	-
In-frame	ENST00000262027	ENST00000552285		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
In-frame	ENST00000262027	ENST00000315970		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
In-frame	ENST00000262027	ENST00000439210		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
In-frame	ENST00000262027	ENST00000389146		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000413095		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000551035		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000435406		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000257966		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000262027	ENST00000389142		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
Frame-shit	ENST00000315473	ENST00000552285		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
Frame-shit	ENST00000315473	ENST00000315970		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
Frame-shit	ENST00000315473	ENST00000439210		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
Frame-shit	ENST00000315473	ENST00000389146		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000413095		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000551035		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000435406		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000257966		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000315473	ENST00000389142		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000447721	ENST00000552285		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000447721	ENST00000315970		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000447721	ENST00000439210		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000447721	ENST00000389146		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-intron	ENST00000447721	ENST00000413095		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-intron	ENST00000447721	ENST00000551035		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-intron	ENST00000447721	ENST00000435406		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-intron	ENST00000447721	ENST00000257966		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
intron-intron	ENST00000447721	ENST00000389142		TCGA	LD	LGG	TCGA-S9-A7R2-01A	MARS	chr12	57909774	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000394657	ENST00000262428		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
5UTR-5UTR	ENST00000394657	ENST00000567278		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
5UTR-5UTR	ENST00000394657	ENST00000564057		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
5UTR-3CDS	ENST00000300245	ENST00000262428		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
5UTR-5UTR	ENST00000300245	ENST00000567278		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
5UTR-5UTR	ENST00000300245	ENST00000564057		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
intron-3CDS	ENST00000570004	ENST00000262428		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
intron-5UTR	ENST00000570004	ENST00000567278		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
intron-5UTR	ENST00000570004	ENST00000564057		TCGA	LD	LGG	TCGA-S9-A7R7-01A	AKTIP	chr16	53537059	-	COTL1	chr16	84600561	-
intron-3CDS	ENST00000405409	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000405409	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000405409	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000405409	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000405409	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000405409	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000405409	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000414461	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000414461	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000414461	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000414461	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000414461	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000414461	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000414461	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000449924	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000449924	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000449924	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000449924	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000449924	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000449924	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000449924	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000262829	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000262829	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000262829	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000262829	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000262829	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000262829	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000262829	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000397303	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000397303	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000397303	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000397303	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000397303	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000397303	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000397303	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-3CDS	ENST00000359369	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-3CDS	ENST00000359369	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-5UTR	ENST00000359369	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-5UTR	ENST00000359369	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-intron	ENST00000359369	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-intron	ENST00000359369	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5UTR-intron	ENST00000359369	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000416721	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-3CDS	ENST00000416721	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000416721	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-5UTR	ENST00000416721	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000416721	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000416721	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
intron-intron	ENST00000416721	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
Frame-shit	ENST00000438146	ENST00000417669		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
Frame-shit	ENST00000438146	ENST00000414469		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5CDS-5UTR	ENST00000438146	ENST00000439548		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5CDS-5UTR	ENST00000438146	ENST00000443721		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5CDS-intron	ENST00000438146	ENST00000465861		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5CDS-intron	ENST00000438146	ENST00000542779		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5CDS-intron	ENST00000438146	ENST00000538182		TCGA	LD	LGG	TCGA-S9-A7R7-01A	RBFOX2	chr22	36334895	-	MPPED1	chr22	43870616	+
5CDS-3UTR	ENST00000455537	ENST00000553221		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000455537	ENST00000257910		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000455537	ENST00000547992		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000455537	ENST00000547472		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000286452	ENST00000553221		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000286452	ENST00000257910		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000286452	ENST00000547992		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000286452	ENST00000547472		TCGA	LD	LGG	TCGA-TM-A7C3-01A	KIF5A	chr12	57958756	+	TSPAN31	chr12	58140372	+
Frame-shit	ENST00000465357	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000465357	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000539517	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000539517	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
5UTR-3CDS	ENST00000267422	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
5UTR-3CDS	ENST00000267422	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000344429	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000344429	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000547619	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000547619	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000574031	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000574031	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
5UTR-3CDS	ENST00000551754	ENST00000310850		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
5UTR-3CDS	ENST00000551754	ENST00000356180		TCGA	LD	LGG	TCGA-TM-A7C3-01A	NOVA1	chr14	27064616	-	DTD2	chr14	31922550	-
Frame-shit	ENST00000261475	ENST00000298130		TCGA	LD	LGG	TCGA-TM-A7C3-01A	PPP2R3C	chr14	35568458	-	SPTSSA	chr14	34904510	-
intron-3CDS	ENST00000555644	ENST00000298130		TCGA	LD	LGG	TCGA-TM-A7C3-01A	PPP2R3C	chr14	35568458	-	SPTSSA	chr14	34904510	-
intron-5UTR	ENST00000446982	ENST00000343110		TCGA	LD	LGG	TCGA-TM-A7C3-01A	SYT16	chr14	62279528	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000430451	ENST00000343110		TCGA	LD	LGG	TCGA-TM-A7C3-01A	SYT16	chr14	62279528	+	PRELP	chr1	203452297	+
5UTR-3UTR	ENST00000199940	ENST00000468592		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000199940	ENST00000539783		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000199940	ENST00000375255		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000360351	ENST00000468592		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000360351	ENST00000539783		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000360351	ENST00000375255		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000361559	ENST00000468592		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000361559	ENST00000539783		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000361559	ENST00000375255		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000392194	ENST00000468592		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000392194	ENST00000539783		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
5UTR-3UTR	ENST00000392194	ENST00000375255		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
intron-3UTR	ENST00000447185	ENST00000468592		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
intron-3UTR	ENST00000447185	ENST00000539783		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
intron-3UTR	ENST00000447185	ENST00000375255		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
intron-3UTR	ENST00000475600	ENST00000468592		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
intron-3UTR	ENST00000475600	ENST00000539783		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
intron-3UTR	ENST00000475600	ENST00000375255		TCGA	LD	LGG	TCGA-TM-A7CA-01A	MAP2	chr2	210489853	+	DCAF17	chr2	172305191	+
Frame-shit	ENST00000220592	ENST00000409039		TCGA	LD	LGG	TCGA-TM-A7CF-01A	AGO2	chr8	141557567	-	DNAH10	chr12	124377780	+
5CDS-intron	ENST00000220592	ENST00000538983		TCGA	LD	LGG	TCGA-TM-A7CF-01A	AGO2	chr8	141557567	-	DNAH10	chr12	124377780	+
Frame-shit	ENST00000519980	ENST00000409039		TCGA	LD	LGG	TCGA-TM-A7CF-01A	AGO2	chr8	141557567	-	DNAH10	chr12	124377780	+
5CDS-intron	ENST00000519980	ENST00000538983		TCGA	LD	LGG	TCGA-TM-A7CF-01A	AGO2	chr8	141557567	-	DNAH10	chr12	124377780	+
intron-3CDS	ENST00000517293	ENST00000409039		TCGA	LD	LGG	TCGA-TM-A7CF-01A	AGO2	chr8	141557567	-	DNAH10	chr12	124377780	+
intron-intron	ENST00000517293	ENST00000538983		TCGA	LD	LGG	TCGA-TM-A7CF-01A	AGO2	chr8	141557567	-	DNAH10	chr12	124377780	+
In-frame	ENST00000252599	ENST00000262812		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
In-frame	ENST00000252599	ENST00000349893		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
In-frame	ENST00000252599	ENST00000600932		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
5CDS-5UTR	ENST00000252599	ENST00000598969		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
5CDS-5UTR	ENST00000252599	ENST00000351079		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
intron-3CDS	ENST00000601354	ENST00000262812		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
intron-3CDS	ENST00000601354	ENST00000349893		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
intron-3CDS	ENST00000601354	ENST00000600932		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
intron-5UTR	ENST00000601354	ENST00000598969		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
intron-5UTR	ENST00000601354	ENST00000351079		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17671274	+	COPE	chr19	19021880	-
In-frame	ENST00000252599	ENST00000375864		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-5UTR	ENST00000252599	ENST00000409525		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000471088		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000480530		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000484964		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000556456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000437674		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000383429		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000480515		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
5CDS-intron	ENST00000252599	ENST00000456439		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-3CDS	ENST00000601354	ENST00000375864		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-5UTR	ENST00000601354	ENST00000409525		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000471088		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000480530		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000484964		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000556456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000437674		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000383429		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000480515		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
3UTR-intron	ENST00000601354	ENST00000456439		TCGA	LD	LGG	TCGA-TM-A7CF-01A	COLGALT1	chr19	17679522	+	LY6G5B	chr6	31638933	+
In-frame	ENST00000398665	ENST00000215567		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000398665	ENST00000596073		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000398665	ENST00000600083		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000398665	ENST00000436007		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
5CDS-3UTR	ENST00000398665	ENST00000596164		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000608122	ENST00000215567		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000608122	ENST00000596073		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000608122	ENST00000600083		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000608122	ENST00000436007		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000608122	ENST00000596164		TCGA	LD	LGG	TCGA-TM-A7CF-01A	DOT1L	chr19	2194576	+	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000382159	ENST00000252622		TCGA	LD	LGG	TCGA-TM-A7CF-01A	GNG7	chr19	2702644	-	LSM7	chr19	2324195	-
5UTR-5UTR	ENST00000382159	ENST00000589532		TCGA	LD	LGG	TCGA-TM-A7CF-01A	GNG7	chr19	2702644	-	LSM7	chr19	2324195	-
Frame-shit	ENST00000263390	ENST00000341130		TCGA	LD	LGG	TCGA-TM-A7CF-01A	MED26	chr19	16738683	-	TMEM221	chr19	17556093	-
Frame-shit	ENST00000357066	ENST00000369215		TCGA	LD	LGG	TCGA-TM-A7CF-01A	MOB3A	chr19	2076810	-	PRDM13	chr6	100060909	+
intron-3CDS	ENST00000592143	ENST00000369215		TCGA	LD	LGG	TCGA-TM-A7CF-01A	MOB3A	chr19	2076810	-	PRDM13	chr6	100060909	+
In-frame	ENST00000592280	ENST00000369215		TCGA	LD	LGG	TCGA-TM-A7CF-01A	MOB3A	chr19	2076810	-	PRDM13	chr6	100060909	+
Frame-shit	ENST00000394480	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000394480	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000394480	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000394480	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
In-frame	ENST00000557856	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000557856	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000557856	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000557856	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000357724	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000357724	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000357724	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000357724	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000355254	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000355254	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000355254	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000355254	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000360948	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000360948	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000360948	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000360948	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000542733	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000542733	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000542733	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000542733	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
In-frame	ENST00000558676	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000558676	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000558676	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000558676	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000317501	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000317501	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000317501	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000317501	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
intron-3CDS	ENST00000558306	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
intron-intron	ENST00000558306	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
intron-intron	ENST00000558306	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
intron-intron	ENST00000558306	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
In-frame	ENST00000540489	ENST00000560626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000540489	ENST00000558305		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000540489	ENST00000567337		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000540489	ENST00000312493		TCGA	LD	LGG	TCGA-TM-A7CF-01A	NTRK3	chr15	88726649	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000371117	ENST00000440973		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000371117	ENST00000338799		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000371117	ENST00000456483		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000371117	ENST00000443427		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000371117	ENST00000206249		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000371117	ENST00000406599		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000371117	ENST00000427531		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000371117	ENST00000482101		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000340994	ENST00000440973		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000340994	ENST00000338799		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000340994	ENST00000456483		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000340994	ENST00000443427		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
Frame-shit	ENST00000340994	ENST00000206249		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000340994	ENST00000406599		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000340994	ENST00000427531		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000340994	ENST00000482101		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PKHD1	chr6	51712573	-	ESR1	chr6	152201790	+
5CDS-intron	ENST00000591462	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
5CDS-intron	ENST00000252455	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
5CDS-intron	ENST00000412601	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
5CDS-intron	ENST00000592741	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
5CDS-intron	ENST00000587327	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
5CDS-intron	ENST00000589838	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
intron-intron	ENST00000591510	ENST00000502675		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PRKCSH	chr19	11553330	+	ZNF826P	chr19	20519854	-
Frame-shit	ENST00000306726	ENST00000308508		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PTPN9	chr15	75815462	-	CSPG4	chr15	75975382	-
intron-3CDS	ENST00000564970	ENST00000308508		TCGA	LD	LGG	TCGA-TM-A7CF-01A	PTPN9	chr15	75815462	-	CSPG4	chr15	75975382	-
In-frame	ENST00000439268	ENST00000293350		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000439268	ENST00000540132		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000439268	ENST00000455361		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000439268	ENST00000433981		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000439268	ENST00000598015		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000340578	ENST00000293350		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000340578	ENST00000540132		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000340578	ENST00000455361		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000340578	ENST00000433981		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000340578	ENST00000598015		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000541471	ENST00000293350		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000541471	ENST00000540132		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000541471	ENST00000455361		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000541471	ENST00000433981		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000541471	ENST00000598015		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000591092	ENST00000293350		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000591092	ENST00000540132		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000591092	ENST00000455361		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000591092	ENST00000433981		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000591092	ENST00000598015		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
In-frame	ENST00000034275	ENST00000293350		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000034275	ENST00000540132		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000034275	ENST00000455361		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000034275	ENST00000433981		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000034275	ENST00000598015		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5UTR-3CDS	ENST00000591124	ENST00000293350		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5UTR-intron	ENST00000591124	ENST00000540132		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5UTR-intron	ENST00000591124	ENST00000455361		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5UTR-intron	ENST00000591124	ENST00000433981		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5UTR-3UTR	ENST00000591124	ENST00000598015		TCGA	LD	LGG	TCGA-TM-A7CF-01A	RANBP3	chr19	5978072	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000360565	ENST00000339796		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SCAF1	chr19	50155926	+	ETV7	chr6	36343378	-
5CDS-intron	ENST00000360565	ENST00000373737		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SCAF1	chr19	50155926	+	ETV7	chr6	36343378	-
5CDS-intron	ENST00000360565	ENST00000340181		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SCAF1	chr19	50155926	+	ETV7	chr6	36343378	-
5CDS-intron	ENST00000360565	ENST00000373738		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SCAF1	chr19	50155926	+	ETV7	chr6	36343378	-
5CDS-intron	ENST00000360565	ENST00000538992		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SCAF1	chr19	50155926	+	ETV7	chr6	36343378	-
intron-3CDS	ENST00000269886	ENST00000595090		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-3CDS	ENST00000269886	ENST00000601968		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-intron	ENST00000269886	ENST00000598768		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-intron	ENST00000269886	ENST00000413176		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-3CDS	ENST00000598564	ENST00000595090		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-3CDS	ENST00000598564	ENST00000601968		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-intron	ENST00000598564	ENST00000598768		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-intron	ENST00000598564	ENST00000413176		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-3CDS	ENST00000417295	ENST00000595090		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-3CDS	ENST00000417295	ENST00000601968		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-intron	ENST00000417295	ENST00000598768		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
intron-intron	ENST00000417295	ENST00000413176		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SH3GL1	chr19	4390049	-	RUVBL2	chr19	49514256	+
In-frame	ENST00000358026	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000358026	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000358026	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000358026	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000344626	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000344626	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000344626	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000344626	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000429416	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000429416	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000429416	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000429416	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000541122	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000541122	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000541122	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000541122	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000589677	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000589677	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000589677	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000589677	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000444061	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000444061	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000444061	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000444061	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000590574	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000590574	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000590574	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000590574	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000413806	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000413806	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000413806	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000413806	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000450717	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
In-frame	ENST00000450717	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-5UTR	ENST00000450717	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
5CDS-intron	ENST00000450717	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
intron-3CDS	ENST00000538456	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
intron-3CDS	ENST00000538456	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
intron-5UTR	ENST00000538456	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
intron-intron	ENST00000538456	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	SMARCA4	chr19	11107220	+	SMIM7	chr19	16758072	-
intron-intron	ENST00000322357	ENST00000586182		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-intron	ENST00000322357	ENST00000591058		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-3UTR	ENST00000322357	ENST00000221307		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-intron	ENST00000322357	ENST00000585846		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-3UTR	ENST00000322357	ENST00000588886		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-intron	ENST00000601588	ENST00000586182		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-intron	ENST00000601588	ENST00000591058		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-3UTR	ENST00000601588	ENST00000221307		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-intron	ENST00000601588	ENST00000585846		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-3UTR	ENST00000601588	ENST00000588886		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZBTB7A	chr19	4044973	-	CYP4F3	chr19	15772046	+
intron-3CDS	ENST00000361151	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361151	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000361151	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000361451	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000361451	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-3CDS	ENST00000588933	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5UTR-intron	ENST00000588933	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588221	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000588221	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592904	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000592904	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000590306	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000590306	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000592292	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000592292	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000358026		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000344626		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000429416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000541122		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000589677		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000444061		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000590574		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000413806		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-3CDS	ENST00000588013	ENST00000450717		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
intron-intron	ENST00000588013	ENST00000538456		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF266	chr19	9544741	-	SMARCA4	chr19	11130267	+
5CDS-intron	ENST00000436120	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000436120	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000436120	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000436120	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000587349	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000587349	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000587349	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000587349	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
intron-intron	ENST00000589615	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
intron-intron	ENST00000589615	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
intron-intron	ENST00000589615	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
intron-intron	ENST00000589615	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000483919	ENST00000487416		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000483919	ENST00000597711		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000483919	ENST00000397349		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5CDS-intron	ENST00000483919	ENST00000358726		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF527	chr19	37871274	+	SMIM7	chr19	16742535	-
5UTR-3CDS	ENST00000592533	ENST00000222345		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
5UTR-intron	ENST00000592533	ENST00000476317		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-3CDS	ENST00000589117	ENST00000222345		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-intron	ENST00000589117	ENST00000476317		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-3CDS	ENST00000587220	ENST00000222345		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-intron	ENST00000587220	ENST00000476317		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-3CDS	ENST00000316433	ENST00000222345		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-intron	ENST00000316433	ENST00000476317		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-3CDS	ENST00000586792	ENST00000222345		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-intron	ENST00000586792	ENST00000476317		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-3CDS	ENST00000343599	ENST00000222345		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
intron-intron	ENST00000343599	ENST00000476317		TCGA	LD	LGG	TCGA-TM-A7CF-01A	ZNF540	chr19	38042567	+	SIPA1L3	chr19	38652893	+
5CDS-intron	ENST00000548256	ENST00000543426		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000548256	ENST00000228682		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000548256	ENST00000546141		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5UTR-intron	ENST00000551420	ENST00000543426		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000551420	ENST00000228682		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5UTR-5UTR	ENST00000551420	ENST00000546141		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-intron	ENST00000300209	ENST00000543426		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000300209	ENST00000228682		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000300209	ENST00000546141		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
intron-intron	ENST00000552307	ENST00000543426		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
intron-5UTR	ENST00000552307	ENST00000228682		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
intron-5UTR	ENST00000552307	ENST00000546141		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-intron	ENST00000333012	ENST00000543426		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000333012	ENST00000228682		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
5CDS-5UTR	ENST00000333012	ENST00000546141		TCGA	LD	LGG	TCGA-TM-A84B-01A	METTL21B	chr12	58166911	+	GLI1	chr12	57857448	+
intron-3CDS	ENST00000454872	ENST00000481065		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-3CDS	ENST00000454872	ENST00000486257		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-3CDS	ENST00000454872	ENST00000383671		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-intron	ENST00000454872	ENST00000496848		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-3CDS	ENST00000473253	ENST00000481065		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-3CDS	ENST00000473253	ENST00000486257		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-3CDS	ENST00000473253	ENST00000383671		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
intron-intron	ENST00000473253	ENST00000496848		TCGA	LD	LGG	TCGA-TM-A84B-01A	NAALADL2	chr3	174455536	+	TIGIT	chr3	114018444	+
5CDS-intron	ENST00000323544	ENST00000559565		TCGA	LD	LGG	TCGA-TM-A84B-01A	PLEKHO2	chr15	65153774	+	TRIP4	chr15	64737205	+
5CDS-intron	ENST00000323544	ENST00000261884		TCGA	LD	LGG	TCGA-TM-A84B-01A	PLEKHO2	chr15	65153774	+	TRIP4	chr15	64737205	+
intron-5UTR	ENST00000589799	ENST00000568956		TCGA	LD	LGG	TCGA-TM-A84B-01A	ZNF235	chr19	44802973	-	ZNF865	chr19	56124959	+
intron-5UTR	ENST00000589248	ENST00000568956		TCGA	LD	LGG	TCGA-TM-A84B-01A	ZNF235	chr19	44802973	-	ZNF865	chr19	56124959	+
intron-5UTR	ENST00000291182	ENST00000568956		TCGA	LD	LGG	TCGA-TM-A84B-01A	ZNF235	chr19	44802973	-	ZNF865	chr19	56124959	+
5UTR-3CDS	ENST00000586458	ENST00000402988		TCGA	LD	LGG	TCGA-TM-A84B-01A	ZNF529	chr19	37096028	-	IGSF23	chr19	45127000	+
intron-3CDS	ENST00000334116	ENST00000402988		TCGA	LD	LGG	TCGA-TM-A84B-01A	ZNF529	chr19	37096028	-	IGSF23	chr19	45127000	+
intron-3CDS	ENST00000591340	ENST00000402988		TCGA	LD	LGG	TCGA-TM-A84B-01A	ZNF529	chr19	37096028	-	IGSF23	chr19	45127000	+
In-frame	ENST00000589037	ENST00000341165		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000589037	ENST00000422280		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000589037	ENST00000542611		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000589037	ENST00000590996		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000589037	ENST00000389312		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
5CDS-intron	ENST00000589037	ENST00000589872		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000253788	ENST00000341165		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000253788	ENST00000422280		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000253788	ENST00000542611		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000253788	ENST00000590996		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000253788	ENST00000389312		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
5CDS-intron	ENST00000253788	ENST00000589872		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000589913	ENST00000341165		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000589913	ENST00000422280		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000589913	ENST00000542611		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000589913	ENST00000590996		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000589913	ENST00000389312		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
5CDS-intron	ENST00000589913	ENST00000589872		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000590864	ENST00000341165		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000590864	ENST00000422280		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
In-frame	ENST00000590864	ENST00000542611		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000590864	ENST00000590996		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
Frame-shit	ENST00000590864	ENST00000389312		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
5CDS-intron	ENST00000590864	ENST00000589872		TCGA	LD	LGG	TCGA-TM-A84F-01A	RPL27	chr17	41152119	+	NBR1	chr17	41361920	+
5CDS-intron	ENST00000198765	ENST00000520052		TCGA	LD	LGG	TCGA-TM-A84H-01A	CPNE3	chr8	87560662	+	ANGPT1	chr8	108509734	-
5CDS-intron	ENST00000198765	ENST00000520734		TCGA	LD	LGG	TCGA-TM-A84H-01A	CPNE3	chr8	87560662	+	ANGPT1	chr8	108509734	-
5CDS-intron	ENST00000198765	ENST00000518386		TCGA	LD	LGG	TCGA-TM-A84H-01A	CPNE3	chr8	87560662	+	ANGPT1	chr8	108509734	-
5CDS-intron	ENST00000521271	ENST00000520052		TCGA	LD	LGG	TCGA-TM-A84H-01A	CPNE3	chr8	87560662	+	ANGPT1	chr8	108509734	-
5CDS-intron	ENST00000521271	ENST00000520734		TCGA	LD	LGG	TCGA-TM-A84H-01A	CPNE3	chr8	87560662	+	ANGPT1	chr8	108509734	-
5CDS-intron	ENST00000521271	ENST00000518386		TCGA	LD	LGG	TCGA-TM-A84H-01A	CPNE3	chr8	87560662	+	ANGPT1	chr8	108509734	-
5CDS-5UTR	ENST00000373184	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373184	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373184	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373187	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373187	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373187	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000356100	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000356100	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000356100	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373190	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373190	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373190	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373193	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373193	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373193	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373198	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373198	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373198	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373201	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373201	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
5CDS-5UTR	ENST00000373201	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
intron-5UTR	ENST00000485499	ENST00000297438		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
intron-5UTR	ENST00000485499	ENST00000451899		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
intron-5UTR	ENST00000485499	ENST00000520659		TCGA	LD	LGG	TCGA-TM-A84H-01A	PTPRT	chr20	40944363	-	OSGIN2	chr8	90921795	+
intron-3CDS	ENST00000541908	ENST00000396958		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-3CDS	ENST00000541908	ENST00000293981		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-intron	ENST00000541908	ENST00000572006		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-3UTR	ENST00000541908	ENST00000572786		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
Frame-shit	ENST00000398864	ENST00000396958		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
Frame-shit	ENST00000398864	ENST00000293981		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
5CDS-intron	ENST00000398864	ENST00000572006		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
5CDS-3UTR	ENST00000398864	ENST00000572786		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
Frame-shit	ENST00000266508	ENST00000396958		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
Frame-shit	ENST00000266508	ENST00000293981		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
5CDS-intron	ENST00000266508	ENST00000572006		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
5CDS-3UTR	ENST00000266508	ENST00000572786		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-3CDS	ENST00000360995	ENST00000396958		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-3CDS	ENST00000360995	ENST00000293981		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-intron	ENST00000360995	ENST00000572006		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
intron-3UTR	ENST00000360995	ENST00000572786		TCGA	LD	LGG	TCGA-TM-A84I-01A	AEBP2	chr12	19593304	+	FLYWCH2	chr16	2949050	+
5CDS-5UTR	ENST00000541951	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000541951	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000541951	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000541951	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000310571	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000310571	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000310571	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000310571	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000535604	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000535604	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000535604	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000535604	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000536003	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000536003	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000536003	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000536003	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000544552	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000544552	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000544552	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000544552	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000376384	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000376384	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000376384	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000376384	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
intron-5UTR	ENST00000543079	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
intron-5UTR	ENST00000543079	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
intron-5UTR	ENST00000543079	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
intron-intron	ENST00000543079	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000544909	ENST00000588623		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000544909	ENST00000262374		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-5UTR	ENST00000544909	ENST00000544428		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
5CDS-intron	ENST00000544909	ENST00000592661		TCGA	LD	LGG	TCGA-TM-A84I-01A	PAAF1	chr11	73630077	+	ALG1	chr16	5122952	+
In-frame	ENST00000355360	ENST00000252108		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
In-frame	ENST00000355360	ENST00000431736		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
In-frame	ENST00000355360	ENST00000545354		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000329291	ENST00000252108		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000329291	ENST00000431736		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000329291	ENST00000545354		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000539153	ENST00000252108		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000539153	ENST00000431736		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000539153	ENST00000545354		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000462488	ENST00000252108		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000462488	ENST00000431736		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000462488	ENST00000545354		TCGA	LD	LGG	TCGA-TM-A84I-01A	PGBD2	chr1	249211600	+	UBE4A	chr11	118253304	+
Frame-shit	ENST00000310653	ENST00000266383		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000310653	ENST00000544638		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000336083	ENST00000266383		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000336083	ENST00000544638		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000536566	ENST00000266383		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000536566	ENST00000544638		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000541588	ENST00000266383		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
intron-intron	ENST00000541588	ENST00000544638		TCGA	LD	LGG	TCGA-TM-A84I-01A	RAB6A	chr11	73418465	-	B4GALNT3	chr12	644332	+
5UTR-intron	ENST00000376663	ENST00000379051		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5UTR-intron	ENST00000376663	ENST00000379033		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5UTR-intron	ENST00000376663	ENST00000298428		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5UTR-3UTR	ENST00000376663	ENST00000495368		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5UTR-3UTR	ENST00000376663	ENST00000304267		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5UTR-3UTR	ENST00000376663	ENST00000379020		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5UTR-intron	ENST00000376663	ENST00000379017		TCGA	LD	LGG	TCGA-TM-A84J-01A	BMI1	chr10	22610625	+	SEC61A2	chr10	12198906	+
5CDS-intron	ENST00000295688	ENST00000356634		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000295688	ENST00000400181		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000295688	ENST00000542151		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000368259	ENST00000356634		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000368259	ENST00000400181		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000368259	ENST00000542151		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000368261	ENST00000356634		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000368261	ENST00000400181		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000368261	ENST00000542151		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000472765	ENST00000356634		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000472765	ENST00000400181		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5CDS-intron	ENST00000472765	ENST00000542151		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5UTR-intron	ENST00000368256	ENST00000356634		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5UTR-intron	ENST00000368256	ENST00000400181		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
5UTR-intron	ENST00000368256	ENST00000542151		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156303338	-	KDM1A	chr1	23370920	+
intron-5UTR	ENST00000295688	ENST00000404138		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000295688	ENST00000375647		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000295688	ENST00000374651		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368259	ENST00000404138		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368259	ENST00000375647		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368259	ENST00000374651		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368261	ENST00000404138		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368261	ENST00000375647		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368261	ENST00000374651		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000472765	ENST00000404138		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000472765	ENST00000375647		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000472765	ENST00000374651		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368256	ENST00000404138		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368256	ENST00000375647		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
intron-5UTR	ENST00000368256	ENST00000374651		TCGA	LD	LGG	TCGA-TM-A84J-01A	CCT3	chr1	156278994	-	ZBTB40	chr1	22816373	+
5UTR-3CDS	ENST00000478899	ENST00000295688		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000478899	ENST00000368259		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000478899	ENST00000368261		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
5UTR-3CDS	ENST00000478899	ENST00000472765		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
5UTR-intron	ENST00000478899	ENST00000368256		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
In-frame	ENST00000361531	ENST00000295688		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
In-frame	ENST00000361531	ENST00000368259		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
In-frame	ENST00000361531	ENST00000368261		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
In-frame	ENST00000361531	ENST00000472765		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000361531	ENST00000368256		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000368211	ENST00000295688		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000368211	ENST00000368259		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000368211	ENST00000368261		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
Frame-shit	ENST00000368211	ENST00000472765		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
5CDS-intron	ENST00000368211	ENST00000368256		TCGA	LD	LGG	TCGA-TM-A84J-01A	MRPL24	chr1	156707438	-	CCT3	chr1	156294880	-
In-frame	ENST00000333039	ENST00000215909		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000333039	ENST00000489315		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	LGALS1	chr22	38072993	+
5CDS-intron	ENST00000333039	ENST00000357436		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	SH3BP1	chr22	38061562	+
5CDS-intron	ENST00000333039	ENST00000336738		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	SH3BP1	chr22	38061562	+
5CDS-intron	ENST00000333039	ENST00000442465		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	SH3BP1	chr22	38061562	+
5CDS-intron	ENST00000333039	ENST00000495174		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	SH3BP1	chr22	38061562	+
5CDS-intron	ENST00000333039	ENST00000599616		TCGA	LD	LGG	TCGA-TM-A84J-01A	NPTXR	chr22	39239240	-	SH3BP1	chr22	38061562	+
5CDS-intron	ENST00000359337	ENST00000443839		TCGA	LD	LGG	TCGA-TM-A84J-01A	PLXNB2	chr22	50721766	-	SMPD4P1	chr22	20968022	-
5CDS-intron	ENST00000449103	ENST00000443839		TCGA	LD	LGG	TCGA-TM-A84J-01A	PLXNB2	chr22	50721766	-	SMPD4P1	chr22	20968022	-
5CDS-intron	ENST00000496720	ENST00000443839		TCGA	LD	LGG	TCGA-TM-A84J-01A	PLXNB2	chr22	50721766	-	SMPD4P1	chr22	20968022	-
Frame-shit	ENST00000393386	ENST00000310396		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000393386	ENST00000450913		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000393386	ENST00000423795		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000393386	ENST00000495036		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000393386	ENST00000340646		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
Frame-shit	ENST00000449182	ENST00000310396		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000449182	ENST00000450913		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000449182	ENST00000423795		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000449182	ENST00000495036		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000449182	ENST00000340646		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
intron-3CDS	ENST00000483028	ENST00000310396		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
intron-intron	ENST00000483028	ENST00000450913		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
intron-intron	ENST00000483028	ENST00000423795		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
intron-intron	ENST00000483028	ENST00000495036		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
intron-intron	ENST00000483028	ENST00000340646		TCGA	LD	LGG	TCGA-TM-A84J-01A	PTPRZ1	chr7	121513611	+	CPED1	chr7	120935494	+
Frame-shit	ENST00000266037	ENST00000333323		TCGA	LD	LGG	TCGA-TQ-A7RF-01A	DOCK3	chr3	50816189	+	FAM212A	chr3	49841614	+
In-frame	ENST00000261716	ENST00000449302		TCGA	LD	LGG	TCGA-TQ-A7RJ-01A	TAOK1	chr17	27838010	+	C17orf105	chr17	41861205	+
In-frame	ENST00000536202	ENST00000449302		TCGA	LD	LGG	TCGA-TQ-A7RJ-01A	TAOK1	chr17	27838010	+	C17orf105	chr17	41861205	+
intron-3CDS	ENST00000507810	ENST00000409672		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
intron-3CDS	ENST00000507810	ENST00000303354		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
intron-3CDS	ENST00000507810	ENST00000375387		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
intron-3CDS	ENST00000507810	ENST00000409435		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
In-frame	ENST00000261486	ENST00000409672		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
In-frame	ENST00000261486	ENST00000303354		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
In-frame	ENST00000261486	ENST00000375387		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
In-frame	ENST00000261486	ENST00000409435		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	EPB41L4A	chr5	111643083	-	SCN9A	chr2	167108395	-
5CDS-intron	ENST00000237530	ENST00000487143		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	RPN2	chr20	35858462	+	STK39	chr2	169023917	-
5CDS-intron	ENST00000237530	ENST00000355999		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	RPN2	chr20	35858462	+	STK39	chr2	169023917	-
5CDS-intron	ENST00000373622	ENST00000487143		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	RPN2	chr20	35858462	+	STK39	chr2	169023917	-
5CDS-intron	ENST00000373622	ENST00000355999		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	RPN2	chr20	35858462	+	STK39	chr2	169023917	-
3UTR-intron	ENST00000470352	ENST00000487143		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	RPN2	chr20	35858462	+	STK39	chr2	169023917	-
3UTR-intron	ENST00000470352	ENST00000355999		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	RPN2	chr20	35858462	+	STK39	chr2	169023917	-
5UTR-3CDS	ENST00000487143	ENST00000374586		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	STK39	chr2	168931492	-	TMEM245	chr9	111870850	-
In-frame	ENST00000355999	ENST00000374586		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	STK39	chr2	168931492	-	TMEM245	chr9	111870850	-
In-frame	ENST00000249344	ENST00000160373		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	STRIP2	chr7	129100213	+	CTTNBP2	chr7	117451043	-
5CDS-intron	ENST00000249344	ENST00000487820		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	STRIP2	chr7	129100213	+	CTTNBP2	chr7	117451043	-
In-frame	ENST00000435494	ENST00000160373		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	STRIP2	chr7	129100213	+	CTTNBP2	chr7	117451043	-
5CDS-intron	ENST00000435494	ENST00000487820		TCGA	LD	LGG	TCGA-TQ-A7RM-01A	STRIP2	chr7	129100213	+	CTTNBP2	chr7	117451043	-
Frame-shit	ENST00000427277	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000427277	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
In-frame	ENST00000427277	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000297954	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000297954	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
In-frame	ENST00000297954	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000395475	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000395475	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000395475	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000356055	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000356055	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
In-frame	ENST00000356055	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000349097	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000349097	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
In-frame	ENST00000349097	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000395477	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000395477	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
In-frame	ENST00000395477	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375587		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375579		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375576		TCGA	LD	LGG	TCGA-TQ-A7RR-01A	WNK2	chr9	96052329	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000354772	ENST00000329117		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-intron	ENST00000354772	ENST00000361588		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-3CDS	ENST00000397260	ENST00000329117		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-intron	ENST00000397260	ENST00000361588		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-3CDS	ENST00000474057	ENST00000329117		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-intron	ENST00000474057	ENST00000361588		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-3CDS	ENST00000206544	ENST00000329117		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-intron	ENST00000206544	ENST00000361588		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-3CDS	ENST00000397267	ENST00000329117		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-intron	ENST00000397267	ENST00000361588		TCGA	LD	LGG	TCGA-TQ-A7RS-01A	SLC22A17	chr14	23821615	-	BCAN	chr1	156627467	+
intron-3CDS	ENST00000406936	ENST00000544246		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000406936	ENST00000377865		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000406936	ENST00000456367		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000406936	ENST00000328454		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-intron	ENST00000406936	ENST00000377861		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377615	ENST00000544246		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377615	ENST00000377865		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377615	ENST00000456367		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377615	ENST00000328454		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-intron	ENST00000377615	ENST00000377861		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377619	ENST00000544246		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377619	ENST00000377865		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377619	ENST00000456367		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000377619	ENST00000328454		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-intron	ENST00000377619	ENST00000377861		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000355801	ENST00000544246		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000355801	ENST00000377865		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000355801	ENST00000456367		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-3CDS	ENST00000355801	ENST00000328454		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
intron-intron	ENST00000355801	ENST00000377861		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
5UTR-3CDS	ENST00000460675	ENST00000544246		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
5UTR-3CDS	ENST00000460675	ENST00000377865		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
5UTR-3CDS	ENST00000460675	ENST00000456367		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
5UTR-3CDS	ENST00000460675	ENST00000328454		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
5UTR-intron	ENST00000460675	ENST00000377861		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	COMMD6	chr13	76123459	-	PCDH9	chr13	67205543	-
5UTR-3CDS	ENST00000321792	ENST00000471642		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000321792	ENST00000368336		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000321792	ENST00000343043		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000321792	ENST00000496863		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000321792	ENST00000535183		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000321792	ENST00000421487		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000321792	ENST00000465375		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000399794	ENST00000471642		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000399794	ENST00000368336		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000399794	ENST00000343043		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000399794	ENST00000496863		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000399794	ENST00000535183		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000399794	ENST00000421487		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000399794	ENST00000465375		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000413769	ENST00000471642		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000413769	ENST00000368336		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-3CDS	ENST00000413769	ENST00000343043		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000413769	ENST00000496863		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000413769	ENST00000535183		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000413769	ENST00000421487		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
5UTR-intron	ENST00000413769	ENST00000465375		TCGA	LD	LGG	TCGA-TQ-A7RW-01A	RBMXL1	chr1	89458268	-	DAP3	chr1	155707948	+
intron-5UTR	ENST00000316403	ENST00000245185		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-3UTR	ENST00000316403	ENST00000563985		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-intron	ENST00000316403	ENST00000561491		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-5UTR	ENST00000546343	ENST00000245185		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-3UTR	ENST00000546343	ENST00000563985		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-intron	ENST00000546343	ENST00000561491		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-5UTR	ENST00000560366	ENST00000245185		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-3UTR	ENST00000560366	ENST00000563985		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-intron	ENST00000560366	ENST00000561491		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-5UTR	ENST00000405140	ENST00000245185		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-3UTR	ENST00000405140	ENST00000563985		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-intron	ENST00000405140	ENST00000561491		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-5UTR	ENST00000523500	ENST00000245185		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-3UTR	ENST00000523500	ENST00000563985		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
intron-intron	ENST00000523500	ENST00000561491		TCGA	LD	LGG	TCGA-VM-A8CD-01A	CLU	chr8	27462544	-	MT2A	chr16	56642504	+
Frame-shit	ENST00000375759	ENST00000401094		TCGA	LD	LGG	TCGA-VM-A8CD-01A	SPEN	chr1	16203173	+	TTC34	chr1	2577002	-
Frame-shit	ENST00000375759	ENST00000401095		TCGA	LD	LGG	TCGA-VM-A8CD-01A	SPEN	chr1	16203173	+	TTC34	chr1	2577002	-
3UTR-3CDS	ENST00000471538	ENST00000401094		TCGA	LD	LGG	TCGA-VM-A8CD-01A	SPEN	chr1	16203173	+	TTC34	chr1	2577002	-
3UTR-3CDS	ENST00000471538	ENST00000401095		TCGA	LD	LGG	TCGA-VM-A8CD-01A	SPEN	chr1	16203173	+	TTC34	chr1	2577002	-
5CDS-3UTR	ENST00000333916	ENST00000545866		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
5CDS-intron	ENST00000333916	ENST00000609883		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
5CDS-3UTR	ENST00000535437	ENST00000545866		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
5CDS-intron	ENST00000535437	ENST00000609883		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
intron-3UTR	ENST00000520187	ENST00000545866		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
intron-intron	ENST00000520187	ENST00000609883		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
5UTR-3UTR	ENST00000495958	ENST00000545866		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
5UTR-intron	ENST00000495958	ENST00000609883		TCGA	LD	LGG	TCGA-VM-A8CF-01A	CAAP1	chr9	26884808	-	RGAG4	chrX	71347560	-
In-frame	ENST00000394413	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000394413	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394413	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394413	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5UTR-3CDS	ENST00000530902	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5UTR-3CDS	ENST00000530902	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5UTR-intron	ENST00000530902	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5UTR-intron	ENST00000530902	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000508545	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000508545	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000508545	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000508545	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000394414	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000394414	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394414	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394414	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000394411	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000394411	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394411	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394411	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000453001	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000453001	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000453001	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000453001	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000356826	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
In-frame	ENST00000356826	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000356826	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000356826	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394410	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000394410	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394410	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000394410	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000336640	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000336640	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000336640	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000336640	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000504198	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-3CDS	ENST00000504198	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000504198	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
intron-intron	ENST00000504198	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000394409	ENST00000398514		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000394409	ENST00000343218		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394409	ENST00000534907		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
5CDS-intron	ENST00000394409	ENST00000504965		TCGA	LD	LGG	TCGA-VW-A8FI-01A	PPP2R2B	chr5	146257565	-	DPYSL3	chr5	146804526	-
Frame-shit	ENST00000543727	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000543727	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000543727	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000543727	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000543727	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000550559	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000550559	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000550559	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000550559	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000550559	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000548851	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000548851	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000548851	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000548851	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000548851	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000454289	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000454289	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000454289	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000454289	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000454289	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000540550	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000540550	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000540550	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000540550	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
intron-5UTR	ENST00000540550	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000323833	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000323833	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000323833	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000323833	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000323833	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000350762	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000350762	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000350762	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000350762	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000350762	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
3UTR-3CDS	ENST00000497617	ENST00000548249		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
3UTR-3CDS	ENST00000497617	ENST00000537439		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
3UTR-3CDS	ENST00000497617	ENST00000434715		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
3UTR-3CDS	ENST00000497617	ENST00000543672		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
3UTR-5UTR	ENST00000497617	ENST00000551400		TCGA	LD	LGG	TCGA-VW-A8FI-01A	TSFM	chr12	58186856	+	DCTN2	chr12	57929628	-
Frame-shit	ENST00000282272	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000337207	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000450567	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
Frame-shit	ENST00000328737	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000409153	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000539527	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000409919	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
intron-3CDS	ENST00000477852	ENST00000295049		TCGA	LD	LGG	TCGA-WY-A859-01A	ANKRD44	chr2	197943427	-	RFTN2	chr2	198437004	-
5UTR-3CDS	ENST00000377560	ENST00000008527		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
5UTR-intron	ENST00000377560	ENST00000550633		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
5UTR-3CDS	ENST00000430131	ENST00000008527		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
5UTR-intron	ENST00000430131	ENST00000550633		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
5UTR-3CDS	ENST00000550722	ENST00000008527		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
5UTR-intron	ENST00000550722	ENST00000550633		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
intron-3CDS	ENST00000549141	ENST00000008527		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
intron-intron	ENST00000549141	ENST00000550633		TCGA	LD	LGG	TCGA-WY-A859-01A	HECTD4	chr12	112819756	-	CRY1	chr12	107415970	-
In-frame	ENST00000318037	ENST00000419333		TCGA	LD	LGG	TCGA-WY-A859-01A	RNF168	chr3	196229744	-	PCYT1A	chr3	195984758	-
In-frame	ENST00000318037	ENST00000292823		TCGA	LD	LGG	TCGA-WY-A859-01A	RNF168	chr3	196229744	-	PCYT1A	chr3	195984758	-
In-frame	ENST00000318037	ENST00000431016		TCGA	LD	LGG	TCGA-WY-A859-01A	RNF168	chr3	196229744	-	PCYT1A	chr3	195984758	-
5CDS-5UTR	ENST00000318037	ENST00000491544		TCGA	LD	LGG	TCGA-WY-A859-01A	RNF168	chr3	196229744	-	PCYT1A	chr3	195984758	-
3UTR-3UTR	ENST00000446425	ENST00000497517		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000539820		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000382269		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000349624		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000345913		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000346956		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000337415		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000329066		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000382201		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
3UTR-intron	ENST00000446425	ENST00000382198		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-3UTR	ENST00000404924	ENST00000497517		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000539820		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000382269		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000349624		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000345913		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000346956		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000337415		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000329066		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000382201		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000404924	ENST00000382198		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-3UTR	ENST00000309033	ENST00000497517		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000539820		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000382269		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000349624		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000345913		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000346956		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000337415		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000329066		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000382201		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000309033	ENST00000382198		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-3UTR	ENST00000535786	ENST00000497517		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000539820		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000382269		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000349624		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000345913		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000346956		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000337415		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000329066		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000382201		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-intron	ENST00000535786	ENST00000382198		TCGA	LD	LGG	TCGA-WY-A859-01A	UBXN2A	chr2	24181225	+	TPO	chr2	1497574	+
5CDS-5UTR	ENST00000360370	ENST00000483209		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000360370	ENST00000467604		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-intron	ENST00000360370	ENST00000471675		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000360370	ENST00000359213		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000360370	ENST00000393765		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000360370	ENST00000460321		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000346785	ENST00000483209		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000346785	ENST00000467604		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-intron	ENST00000346785	ENST00000471675		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000346785	ENST00000359213		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000346785	ENST00000393765		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000346785	ENST00000460321		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000383598	ENST00000483209		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000383598	ENST00000467604		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-intron	ENST00000383598	ENST00000471675		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000383598	ENST00000359213		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000383598	ENST00000393765		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000383598	ENST00000460321		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000315891	ENST00000483209		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000315891	ENST00000467604		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-intron	ENST00000315891	ENST00000471675		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000315891	ENST00000359213		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000315891	ENST00000393765		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000315891	ENST00000460321		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000508835	ENST00000483209		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000508835	ENST00000467604		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-intron	ENST00000508835	ENST00000471675		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000508835	ENST00000359213		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000508835	ENST00000393765		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
intron-5UTR	ENST00000508835	ENST00000460321		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5UTR-5UTR	ENST00000514023	ENST00000483209		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5UTR-5UTR	ENST00000514023	ENST00000467604		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5UTR-intron	ENST00000514023	ENST00000471675		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5UTR-5UTR	ENST00000514023	ENST00000359213		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5UTR-5UTR	ENST00000514023	ENST00000393765		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5UTR-5UTR	ENST00000514023	ENST00000460321		TCGA	LD	LGG	TCGA-WY-A85C-01A	SLC41A3	chr3	125786790	-	B4GALT4	chr3	118955917	-
5CDS-5UTR	ENST00000253669	ENST00000602198		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000253669	ENST00000253435		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000253669	ENST00000601707		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000253669	ENST00000598265		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-5UTR	ENST00000448593	ENST00000602198		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000448593	ENST00000253435		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000448593	ENST00000601707		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000448593	ENST00000598265		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5UTR-5UTR	ENST00000593360	ENST00000602198		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5UTR-intron	ENST00000593360	ENST00000253435		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5UTR-intron	ENST00000593360	ENST00000601707		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5UTR-intron	ENST00000593360	ENST00000598265		TCGA	LD	LGG	TCGA-WY-A85E-01A	HAUS8	chr19	17184084	-	TEX101	chr19	43910375	+
5CDS-intron	ENST00000267202	ENST00000531326		TCGA	LD	LGG	TCGA-WY-A85E-01A	VPS37B	chr12	123380499	-	PTPN11	chr12	112939948	+
5CDS-intron	ENST00000267202	ENST00000392597		TCGA	LD	LGG	TCGA-WY-A85E-01A	VPS37B	chr12	123380499	-	PTPN11	chr12	112939948	+
5CDS-intron	ENST00000267202	ENST00000351677		TCGA	LD	LGG	TCGA-WY-A85E-01A	VPS37B	chr12	123380499	-	PTPN11	chr12	112939948	+
In-frame	ENST00000409068	ENST00000283646		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	AAK1	chr2	69783992	-	RPIA	chr2	89028796	+
In-frame	ENST00000409085	ENST00000283646		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	AAK1	chr2	69783992	-	RPIA	chr2	89028796	+
In-frame	ENST00000406297	ENST00000283646		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	AAK1	chr2	69783992	-	RPIA	chr2	89028796	+
intron-3CDS	ENST00000470281	ENST00000283646		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	AAK1	chr2	69783992	-	RPIA	chr2	89028796	+
intron-5UTR	ENST00000464611	ENST00000411641		TCGA	RV	LIHC	TCGA-2Y-A9H7-01A	ACTB	chr7	5567255	-	AHSG	chr3	186330855	+
intron-5UTR	ENST00000464611	ENST00000273784		TCGA	RV	LIHC	TCGA-2Y-A9H7-01A	ACTB	chr7	5567255	-	AHSG	chr3	186330855	+
intron-5UTR	ENST00000331789	ENST00000411641		TCGA	RV	LIHC	TCGA-2Y-A9H7-01A	ACTB	chr7	5567255	-	AHSG	chr3	186330855	+
intron-5UTR	ENST00000331789	ENST00000273784		TCGA	RV	LIHC	TCGA-2Y-A9H7-01A	ACTB	chr7	5567255	-	AHSG	chr3	186330855	+
intron-5UTR	ENST00000464611	ENST00000514985		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-5UTR	ENST00000464611	ENST00000511224		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-intron	ENST00000464611	ENST00000506577		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-intron	ENST00000464611	ENST00000507920		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-intron	ENST00000464611	ENST00000509276		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-5UTR	ENST00000331789	ENST00000514985		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-5UTR	ENST00000331789	ENST00000511224		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-intron	ENST00000331789	ENST00000506577		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-intron	ENST00000331789	ENST00000507920		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
intron-intron	ENST00000331789	ENST00000509276		TCGA	RV	LIHC	TCGA-DD-A73F-01A	ACTB	chr7	5567255	-	SEPP1	chr5	42811994	-
In-frame	ENST00000357022	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
In-frame	ENST00000357022	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
3UTR-3CDS	ENST00000489653	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
3UTR-3CDS	ENST00000489653	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
In-frame	ENST00000394457	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
In-frame	ENST00000394457	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
In-frame	ENST00000410073	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
In-frame	ENST00000410073	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	AHSA2	chr2	61413632	+	C2orf74	chr2	61391489	+
3UTR-3CDS	ENST00000295897	ENST00000314888		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
3UTR-3CDS	ENST00000295897	ENST00000540444		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
3UTR-intron	ENST00000295897	ENST00000464379		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000415165	ENST00000314888		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
Frame-shit	ENST00000415165	ENST00000540444		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
5CDS-intron	ENST00000415165	ENST00000464379		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000503124	ENST00000314888		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000503124	ENST00000540444		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-intron	ENST00000503124	ENST00000464379		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000509063	ENST00000314888		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000509063	ENST00000540444		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-intron	ENST00000509063	ENST00000464379		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000401494	ENST00000314888		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000401494	ENST00000540444		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-intron	ENST00000401494	ENST00000464379		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000505649	ENST00000314888		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-3CDS	ENST00000505649	ENST00000540444		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
intron-intron	ENST00000505649	ENST00000464379		TCGA	RV	LIHC	TCGA-G3-A7M6-01A	ALB	chr4	74286973	+	TLN1	chr9	35720506	-
3UTR-5UTR	ENST00000526301	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
3UTR-5UTR	ENST00000526301	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
3UTR-5UTR	ENST00000526301	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
3UTR-5UTR	ENST00000526301	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
3UTR-5UTR	ENST00000526301	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
3UTR-intron	ENST00000526301	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000342115	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000342115	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000342115	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000342115	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000342115	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-intron	ENST00000342115	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528667	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528667	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528667	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528667	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528667	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-intron	ENST00000528667	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000256578	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000256578	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000256578	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000256578	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000256578	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-intron	ENST00000256578	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000358729	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000358729	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000358729	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000358729	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000358729	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-intron	ENST00000358729	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528454	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528454	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528454	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528454	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000528454	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-intron	ENST00000528454	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000393688	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000393688	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000393688	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000393688	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000393688	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-intron	ENST00000393688	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	AMPD2	chr1	110171428	+	ALB	chr4	74270018	+
5CDS-5UTR	ENST00000446014	ENST00000219478		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-intron	ENST00000446014	ENST00000591026		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000446014	ENST00000545009		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000304283	ENST00000219478		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-intron	ENST00000304283	ENST00000591026		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000304283	ENST00000545009		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000585773	ENST00000219478		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-intron	ENST00000585773	ENST00000591026		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000585773	ENST00000545009		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000450067	ENST00000219478		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-intron	ENST00000450067	ENST00000591026		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
5CDS-5UTR	ENST00000450067	ENST00000545009		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
intron-5UTR	ENST00000592711	ENST00000219478		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
intron-intron	ENST00000592711	ENST00000591026		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
intron-5UTR	ENST00000592711	ENST00000545009		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	ANKS3	chr16	4764052	-	ZNF500	chr16	4816077	-
Frame-shit	ENST00000367990	ENST00000381340		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000367990	ENST00000545902		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000367990	ENST00000242737		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000468465	ENST00000381340		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000468465	ENST00000545902		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000468465	ENST00000242737		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000463812	ENST00000381340		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000463812	ENST00000545902		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000463812	ENST00000242737		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000470459	ENST00000381340		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000470459	ENST00000545902		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000470459	ENST00000242737		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-3CDS	ENST00000464492	ENST00000381340		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-5UTR	ENST00000464492	ENST00000545902		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-intron	ENST00000464492	ENST00000242737		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-3CDS	ENST00000491350	ENST00000381340		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-5UTR	ENST00000491350	ENST00000545902		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-intron	ENST00000491350	ENST00000242737		TCGA	RV	LIHC	TCGA-BC-A69I-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000252486	ENST00000379802		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	APOE	chr19	45412650	+	DSP	chr6	7575528	+
Frame-shit	ENST00000252486	ENST00000418664		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	APOE	chr19	45412650	+	DSP	chr6	7575528	+
5CDS-intron	ENST00000252486	ENST00000274364		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	APOE	chr19	45412650	+	IQGAP2	chr5	75700249	+
5CDS-intron	ENST00000252486	ENST00000379730		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	APOE	chr19	45412650	+	IQGAP2	chr5	75700249	+
5CDS-intron	ENST00000252486	ENST00000396234		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	APOE	chr19	45412650	+	IQGAP2	chr5	75700249	+
5CDS-intron	ENST00000252486	ENST00000502745		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	APOE	chr19	45412650	+	IQGAP2	chr5	75700249	+
5CDS-intron	ENST00000252486	ENST00000508410		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	APOE	chr19	45412650	+	IQGAP2	chr5	75700249	+
5CDS-3UTR	ENST00000367816	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000367816	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000367816	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000367816	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000367815	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000367815	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-intron	ENST00000367815	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-intron	ENST00000367815	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000499679	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000499679	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-intron	ENST00000499679	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-intron	ENST00000499679	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000367813	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000367813	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-intron	ENST00000367813	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
intron-intron	ENST00000367813	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	ATP1B1	chr1	169101960	+	THSD4	chr15	72072881	+
In-frame	ENST00000415149	ENST00000306107		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000415149	ENST00000472644		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-3UTR	ENST00000415149	ENST00000481337		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-5UTR	ENST00000415149	ENST00000486979		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-intron	ENST00000415149	ENST00000389927		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000402543	ENST00000306107		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000402543	ENST00000472644		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-3UTR	ENST00000402543	ENST00000481337		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-5UTR	ENST00000402543	ENST00000486979		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-intron	ENST00000402543	ENST00000389927		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000325805	ENST00000306107		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000325805	ENST00000472644		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-3UTR	ENST00000325805	ENST00000481337		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-5UTR	ENST00000325805	ENST00000486979		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-intron	ENST00000325805	ENST00000389927		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
Frame-shit	ENST00000416476	ENST00000306107		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
Frame-shit	ENST00000416476	ENST00000472644		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-3UTR	ENST00000416476	ENST00000481337		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-5UTR	ENST00000416476	ENST00000486979		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-intron	ENST00000416476	ENST00000389927		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000406780	ENST00000306107		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000406780	ENST00000472644		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-3UTR	ENST00000406780	ENST00000481337		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-5UTR	ENST00000406780	ENST00000486979		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
5CDS-intron	ENST00000406780	ENST00000389927		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
3UTR-3CDS	ENST00000473542	ENST00000306107		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
3UTR-3CDS	ENST00000473542	ENST00000472644		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
3UTR-3UTR	ENST00000473542	ENST00000481337		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
3UTR-5UTR	ENST00000473542	ENST00000486979		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
3UTR-intron	ENST00000473542	ENST00000389927		TCGA	RV	LIHC	TCGA-FV-A4ZQ-01A	BBX	chr3	107497366	+	ALCAM	chr3	105238911	+
In-frame	ENST00000358731	ENST00000395965		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000358731	ENST00000505869		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000358731	ENST00000509739		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000358731	ENST00000509163		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
5CDS-intron	ENST00000358731	ENST00000504768		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000380675	ENST00000395965		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000380675	ENST00000505869		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000380675	ENST00000509739		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
In-frame	ENST00000380675	ENST00000509163		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
5CDS-intron	ENST00000380675	ENST00000504768		TCGA	RV	LIHC	TCGA-DD-AADB-01A	BDP1	chr5	70828254	+	FAM172A	chr5	93217394	-
Frame-shit	ENST00000548411	ENST00000306833		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
Frame-shit	ENST00000548411	ENST00000389082		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
Frame-shit	ENST00000548411	ENST00000536562		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
5CDS-intron	ENST00000548411	ENST00000354285		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
5CDS-intron	ENST00000548411	ENST00000545147		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
Frame-shit	ENST00000281474	ENST00000306833		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
Frame-shit	ENST00000281474	ENST00000389082		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
Frame-shit	ENST00000281474	ENST00000536562		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
5CDS-intron	ENST00000281474	ENST00000354285		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
5CDS-intron	ENST00000281474	ENST00000545147		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000551848	ENST00000306833		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000551848	ENST00000389082		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000551848	ENST00000536562		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-intron	ENST00000551848	ENST00000354285		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-intron	ENST00000551848	ENST00000545147		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000550207	ENST00000306833		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000550207	ENST00000389082		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000550207	ENST00000536562		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-intron	ENST00000550207	ENST00000354285		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-intron	ENST00000550207	ENST00000545147		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000551086	ENST00000306833		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000551086	ENST00000389082		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000551086	ENST00000536562		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-intron	ENST00000551086	ENST00000354285		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-intron	ENST00000551086	ENST00000545147		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	BICD1	chr12	32369393	+	DENND5B	chr12	31555577	-
intron-3CDS	ENST00000403396	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000403396	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000403396	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518235	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518235	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000520698	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000520698	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000376931	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000376931	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523267	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523267	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518219	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518219	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523084	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523084	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000292586	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000292586	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000367990		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000468465		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000463812		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000470459		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000521333	ENST00000464492		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000521333	ENST00000491350		TCGA	RV	LIHC	TCGA-BW-A5NQ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000392347	ENST00000398519		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000392347	ENST00000314028		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000392347	ENST00000392334		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000392347	ENST00000578904		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000389641	ENST00000398519		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000389641	ENST00000314028		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000389641	ENST00000392334		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000389641	ENST00000578904		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
In-frame	ENST00000392346	ENST00000398519		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
In-frame	ENST00000392346	ENST00000314028		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000392346	ENST00000392334		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000392346	ENST00000578904		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000327026	ENST00000398519		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000327026	ENST00000314028		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000327026	ENST00000392334		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-intron	ENST00000327026	ENST00000578904		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000392343	ENST00000398519		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000392343	ENST00000314028		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000392343	ENST00000392334		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
intron-intron	ENST00000392343	ENST00000578904		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000397558	ENST00000336648		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
Frame-shit	ENST00000397558	ENST00000399120		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
5CDS-intron	ENST00000397558	ENST00000482273		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
Frame-shit	ENST00000446727	ENST00000336648		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
Frame-shit	ENST00000446727	ENST00000399120		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
5CDS-intron	ENST00000446727	ENST00000482273		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
Frame-shit	ENST00000257583	ENST00000336648		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
Frame-shit	ENST00000257583	ENST00000399120		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
5CDS-intron	ENST00000257583	ENST00000482273		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
intron-3CDS	ENST00000546857	ENST00000336648		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
intron-3CDS	ENST00000546857	ENST00000399120		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
intron-intron	ENST00000546857	ENST00000482273		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	CCDC64	chr12	120527875	+	HLCS	chr21	38139586	-
5CDS-3UTR	ENST00000377795	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000377795	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000377795	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000377795	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000353334	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000353334	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-intron	ENST00000353334	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-intron	ENST00000353334	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000524315	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000524315	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-intron	ENST00000524315	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-intron	ENST00000524315	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000009530	ENST00000355327		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000009530	ENST00000261862		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-intron	ENST00000009530	ENST00000357769		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
intron-intron	ENST00000009530	ENST00000567838		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	CD74	chr5	149781200	-	THSD4	chr15	72072881	+
In-frame	ENST00000274695	ENST00000471646		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000274695	ENST00000341843		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000274695	ENST00000348438		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000274695	ENST00000506074		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
5CDS-intron	ENST00000274695	ENST00000462882		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000378624	ENST00000471646		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000378624	ENST00000341843		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000378624	ENST00000348438		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000378624	ENST00000506074		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-intron	ENST00000378624	ENST00000462882		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000378610	ENST00000471646		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000378610	ENST00000341843		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000378610	ENST00000348438		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
In-frame	ENST00000378610	ENST00000506074		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
5CDS-intron	ENST00000378610	ENST00000462882		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000476517	ENST00000471646		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000476517	ENST00000341843		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000476517	ENST00000348438		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-3CDS	ENST00000476517	ENST00000506074		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
intron-intron	ENST00000476517	ENST00000462882		TCGA	RV	LIHC	TCGA-G3-A7M5-01A	CDKAL1	chr6	21108694	+	CRHR2	chr7	30695628	-
Frame-shit	ENST00000356198	ENST00000546011		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
Frame-shit	ENST00000356198	ENST00000209884		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
5CDS-intron	ENST00000356198	ENST00000493170		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
Frame-shit	ENST00000345664	ENST00000546011		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
Frame-shit	ENST00000345664	ENST00000209884		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
5CDS-intron	ENST00000345664	ENST00000493170		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
Frame-shit	ENST00000367710	ENST00000546011		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
Frame-shit	ENST00000367710	ENST00000209884		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
5CDS-intron	ENST00000367710	ENST00000493170		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
intron-3CDS	ENST00000495275	ENST00000546011		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
intron-3CDS	ENST00000495275	ENST00000209884		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
intron-intron	ENST00000495275	ENST00000493170		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	CENPL	chr1	173776405	-	KLHL20	chr1	173720903	+
5CDS-intron	ENST00000556679	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000440909		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000448921		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000437397		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000355814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393087		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393088		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000404814		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000449399		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000402629		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000555289		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-AADK-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000440909		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000448921		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000437397		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000355814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393087		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393088		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000404814		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000449399		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000402629		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000555289		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000440909		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000448921		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000437397		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000355814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393087		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393088		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000404814		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000449399		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000402629		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000555289		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
In-frame	ENST00000356083	ENST00000252050		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
In-frame	ENST00000356083	ENST00000354495		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
In-frame	ENST00000356083	ENST00000372647		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
5CDS-intron	ENST00000356083	ENST00000502937		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
intron-3CDS	ENST00000477421	ENST00000252050		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
intron-3CDS	ENST00000477421	ENST00000354495		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
intron-3CDS	ENST00000477421	ENST00000372647		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
intron-intron	ENST00000477421	ENST00000502937		TCGA	RV	LIHC	TCGA-FV-A495-01A	COL27A1	chr9	116984547	+	CUL9	chr6	43190517	+
intron-intron	ENST00000260682	ENST00000205948		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CYP2C9	chr10	96749447	+	APOH	chr17	64225556	-
intron-intron	ENST00000461906	ENST00000205948		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CYP2C9	chr10	96749447	+	APOH	chr17	64225556	-
Frame-shit	ENST00000371269	ENST00000272167		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000366837		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000467015		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000537443	ENST00000272167		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000366837		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000467015		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000535035	ENST00000272167		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000366837		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000467015		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
Frame-shit	ENST00000249270	ENST00000343529		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
Frame-shit	ENST00000249270	ENST00000428762		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
Frame-shit	ENST00000249270	ENST00000424685		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
5CDS-5UTR	ENST00000249270	ENST00000473945		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
Frame-shit	ENST00000379263	ENST00000343529		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
Frame-shit	ENST00000379263	ENST00000428762		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
Frame-shit	ENST00000379263	ENST00000424685		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
5CDS-5UTR	ENST00000379263	ENST00000473945		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
intron-3CDS	ENST00000412522	ENST00000343529		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
intron-3CDS	ENST00000412522	ENST00000428762		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
intron-3CDS	ENST00000412522	ENST00000424685		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
intron-5UTR	ENST00000412522	ENST00000473945		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DNAJC2	chr7	102953394	-	RELN	chr7	103124297	-
In-frame	ENST00000340748	ENST00000541276		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
Frame-shit	ENST00000340748	ENST00000393708		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000340748	ENST00000492239		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000340748	ENST00000494368		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
In-frame	ENST00000540357	ENST00000541276		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
Frame-shit	ENST00000540357	ENST00000393708		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000540357	ENST00000492239		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000540357	ENST00000494368		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
In-frame	ENST00000359526	ENST00000541276		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
Frame-shit	ENST00000359526	ENST00000393708		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000359526	ENST00000492239		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000359526	ENST00000494368		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
intron-3CDS	ENST00000589538	ENST00000541276		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
intron-3CDS	ENST00000589538	ENST00000393708		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
intron-5UTR	ENST00000589538	ENST00000492239		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
intron-5UTR	ENST00000589538	ENST00000494368		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10421616	-
Frame-shit	ENST00000258534	ENST00000278780		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DRAM1	chr12	102271698	+	OVOL2	chr20	18022367	-
5CDS-5UTR	ENST00000258534	ENST00000483661		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DRAM1	chr12	102271698	+	OVOL2	chr20	18022367	-
Frame-shit	ENST00000544152	ENST00000278780		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DRAM1	chr12	102271698	+	OVOL2	chr20	18022367	-
5CDS-5UTR	ENST00000544152	ENST00000483661		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	DRAM1	chr12	102271698	+	OVOL2	chr20	18022367	-
intron-5UTR	ENST00000356093	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000356093	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000356093	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000356093	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000356093	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000398863	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000398863	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000398863	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000398863	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000398863	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000343067	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000343067	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000343067	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000343067	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000343067	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000349460	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000349460	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000349460	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000349460	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000349460	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373800	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373800	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373800	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373800	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000373800	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000347529	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000347529	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000347529	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000347529	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000347529	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
5UTR-5UTR	ENST00000373798	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
5UTR-5UTR	ENST00000373798	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
5UTR-5UTR	ENST00000373798	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
5UTR-5UTR	ENST00000373798	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
5UTR-intron	ENST00000373798	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373797	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373797	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373797	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000373797	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000373797	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000460378	ENST00000394253		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000460378	ENST00000373010		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000460378	ENST00000373006		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-5UTR	ENST00000460378	ENST00000297229		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
intron-intron	ENST00000460378	ENST00000373009		TCGA	RV	LIHC	TCGA-MR-A520-01A	EPB41	chr1	29220349	+	USP49	chr6	41774749	-
In-frame	ENST00000367201	ENST00000367195		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
In-frame	ENST00000367201	ENST00000272190		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
Frame-shit	ENST00000367202	ENST00000367195		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
Frame-shit	ENST00000367202	ENST00000272190		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
Frame-shit	ENST00000367199	ENST00000367195		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
Frame-shit	ENST00000367199	ENST00000272190		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
In-frame	ENST00000367198	ENST00000367195		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
In-frame	ENST00000367198	ENST00000272190		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
intron-3CDS	ENST00000367197	ENST00000367195		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
intron-3CDS	ENST00000367197	ENST00000272190		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
5UTR-3CDS	ENST00000477125	ENST00000367195		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
5UTR-3CDS	ENST00000477125	ENST00000272190		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ETNK2	chr1	204110443	-	REN	chr1	204131291	-
In-frame	ENST00000434748	ENST00000330579		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
5CDS-intron	ENST00000434748	ENST00000535343		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
5CDS-intron	ENST00000434748	ENST00000538784		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
In-frame	ENST00000261673	ENST00000330579		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
5CDS-intron	ENST00000261673	ENST00000535343		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
5CDS-intron	ENST00000261673	ENST00000538784		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
3UTR-3CDS	ENST00000542061	ENST00000330579		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
3UTR-intron	ENST00000542061	ENST00000535343		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
3UTR-intron	ENST00000542061	ENST00000538784		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	FBRSL1	chr12	133084936	+	NOC4L	chr12	132631826	+
In-frame	ENST00000534526	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000534526	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000534526	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000534526	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000534526	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000534526	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000531134	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000531134	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000531134	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000531134	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000531134	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000531134	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000427716	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000427716	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000427716	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000427716	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000427716	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000427716	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5UTR-3CDS	ENST00000266482	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5UTR-3CDS	ENST00000266482	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5UTR-3UTR	ENST00000266482	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5UTR-3UTR	ENST00000266482	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5UTR-intron	ENST00000266482	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5UTR-intron	ENST00000266482	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000546442	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000546442	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000546442	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000546442	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000546442	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000546442	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000525053	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
In-frame	ENST00000525053	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000525053	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000525053	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000525053	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000525053	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3CDS	ENST00000381025	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3CDS	ENST00000381025	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3UTR	ENST00000381025	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3UTR	ENST00000381025	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-intron	ENST00000381025	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-intron	ENST00000381025	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
Frame-shit	ENST00000472289	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
Frame-shit	ENST00000472289	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000472289	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-3UTR	ENST00000472289	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000472289	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-intron	ENST00000472289	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3CDS	ENST00000473513	ENST00000358136		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3CDS	ENST00000473513	ENST00000356315		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3UTR	ENST00000473513	ENST00000496628		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-3UTR	ENST00000473513	ENST00000543766		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-intron	ENST00000473513	ENST00000471923		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
intron-intron	ENST00000473513	ENST00000543710		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	FGD4	chr12	32735401	+	VPS13D	chr1	12516054	+
5CDS-5UTR	ENST00000441478	ENST00000312719		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
5CDS-intron	ENST00000441478	ENST00000411826		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
5CDS-intron	ENST00000441478	ENST00000441954		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
5CDS-5UTR	ENST00000230124	ENST00000312719		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
5CDS-intron	ENST00000230124	ENST00000411826		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
5CDS-intron	ENST00000230124	ENST00000441954		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
intron-5UTR	ENST00000368941	ENST00000312719		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
intron-intron	ENST00000368941	ENST00000411826		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
intron-intron	ENST00000368941	ENST00000441954		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	FIG4	chr6	110086364	+	HS3ST5	chr6	114549942	-
5CDS-5UTR	ENST00000307968	ENST00000340253		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307968	ENST00000296701		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307968	ENST00000394370		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307968	ENST00000509699		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307968	ENST00000513826		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307954	ENST00000340253		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307954	ENST00000296701		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307954	ENST00000394370		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307954	ENST00000509699		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000307954	ENST00000513826		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000510461	ENST00000340253		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000510461	ENST00000296701		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000510461	ENST00000394370		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000510461	ENST00000509699		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000510461	ENST00000513826		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000511848	ENST00000340253		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000511848	ENST00000296701		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000511848	ENST00000394370		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000511848	ENST00000509699		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
5CDS-5UTR	ENST00000511848	ENST00000513826		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	FNIP1	chr5	131132523	-	FBXO38	chr5	147774277	+
Frame-shit	ENST00000372572	ENST00000372565		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000372572	ENST00000433602		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
5CDS-intron	ENST00000372572	ENST00000475426		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000372573	ENST00000372565		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000372573	ENST00000433602		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
5CDS-intron	ENST00000372573	ENST00000475426		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000361346	ENST00000372565		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000361346	ENST00000433602		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
5CDS-intron	ENST00000361346	ENST00000475426		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000361776	ENST00000372565		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000361776	ENST00000433602		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
5CDS-intron	ENST00000361776	ENST00000475426		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000545068	ENST00000372565		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000545068	ENST00000433602		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
5CDS-intron	ENST00000545068	ENST00000475426		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000372571	ENST00000372565		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
intron-3CDS	ENST00000372571	ENST00000433602		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
intron-intron	ENST00000372571	ENST00000475426		TCGA	RV	LIHC	TCGA-DD-A11A-01A	FOXJ3	chr1	42744019	-	ZMYND12	chr1	42902214	-
Frame-shit	ENST00000271732	ENST00000358595		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000271732	ENST00000354396		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000271732	ENST00000515192		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000271732	ENST00000505755		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
5CDS-intron	ENST00000271732	ENST00000468970		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000540514	ENST00000358595		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000540514	ENST00000354396		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000540514	ENST00000515192		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000540514	ENST00000505755		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
5CDS-intron	ENST00000540514	ENST00000468970		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000479757	ENST00000358595		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000479757	ENST00000354396		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000479757	ENST00000515192		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
intron-3CDS	ENST00000479757	ENST00000505755		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
intron-intron	ENST00000479757	ENST00000468970		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	GOLPH3L	chr1	150667132	-	ARNT	chr1	150790506	-
In-frame	ENST00000399332	ENST00000439727		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000399332	ENST00000439348		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000399332	ENST00000389961		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000399332	ENST00000543095		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000399332	ENST00000404677		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
5CDS-intron	ENST00000399332	ENST00000382464		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000553700	ENST00000439727		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000553700	ENST00000439348		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000553700	ENST00000389961		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000553700	ENST00000543095		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
In-frame	ENST00000553700	ENST00000404677		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
5CDS-intron	ENST00000553700	ENST00000382464		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
intron-3CDS	ENST00000556474	ENST00000439727		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
intron-3CDS	ENST00000556474	ENST00000439348		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
intron-3CDS	ENST00000556474	ENST00000389961		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
intron-3CDS	ENST00000556474	ENST00000543095		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
intron-3CDS	ENST00000556474	ENST00000404677		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
intron-intron	ENST00000556474	ENST00000382464		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	HECTD1	chr14	31604078	-	HEATR5A	chr14	31814482	-
5UTR-3CDS	ENST00000443617	ENST00000261891		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64332466	-
5UTR-5UTR	ENST00000443617	ENST00000457488		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64332466	-
5UTR-5UTR	ENST00000443617	ENST00000558069		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64332466	-
5UTR-5UTR	ENST00000443617	ENST00000558482		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	HERC1	chr15	64126026	-	DAPK2	chr15	64332466	-
5CDS-5UTR	ENST00000289004	ENST00000463117		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
5CDS-5UTR	ENST00000289004	ENST00000252945		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
5CDS-intron	ENST00000289004	ENST00000480558		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
5CDS-5UTR	ENST00000543163	ENST00000463117		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
5CDS-5UTR	ENST00000543163	ENST00000252945		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
5CDS-intron	ENST00000543163	ENST00000480558		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
intron-5UTR	ENST00000543869	ENST00000463117		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
intron-5UTR	ENST00000543869	ENST00000252945		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
intron-intron	ENST00000543869	ENST00000480558		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	HPD	chr12	122277436	-	CYP2E1	chr10	135340867	+
3UTR-3CDS	ENST00000512608	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
3UTR-3CDS	ENST00000512608	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
3UTR-3CDS	ENST00000512608	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
3UTR-3CDS	ENST00000512608	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
3UTR-intron	ENST00000512608	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
In-frame	ENST00000296564	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
Frame-shit	ENST00000296564	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
In-frame	ENST00000296564	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
In-frame	ENST00000296564	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000296564	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-AACS-01A	KIAA0947	chr5	5448010	+	TERT	chr5	1282739	-
In-frame	ENST00000260731	ENST00000358470		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIF11	chr10	94373376	+	STAT4	chr2	191941051	-
In-frame	ENST00000260731	ENST00000392320		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIF11	chr10	94373376	+	STAT4	chr2	191941051	-
5CDS-intron	ENST00000260731	ENST00000470708		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIF11	chr10	94373376	+	STAT4	chr2	191941051	-
5CDS-intron	ENST00000260731	ENST00000409995		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIF11	chr10	94373376	+	STAT4	chr2	191941051	-
5CDS-5UTR	ENST00000545844	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000545844	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000545844	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000545844	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000545844	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000545844	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000567887	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000567887	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000567887	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000567887	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000567887	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000567887	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000372915	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000372915	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000372915	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000372915	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000372915	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000372915	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000361689	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000361689	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000361689	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000361689	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000361689	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000361689	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000539005	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000539005	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000539005	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000539005	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000539005	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000539005	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000317713	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000317713	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000317713	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000317713	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000317713	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000317713	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000564288	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000564288	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000564288	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000564288	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000564288	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000564288	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000289893	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000289893	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000289893	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000289893	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000289893	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000289893	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000536367	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000536367	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000536367	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000536367	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000536367	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-intron	ENST00000536367	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000484793	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000484793	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000484793	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000484793	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000484793	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-intron	ENST00000484793	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000602421	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000602421	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000602421	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000602421	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000602421	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-intron	ENST00000602421	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000476350	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000476350	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000476350	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000476350	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000476350	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
intron-intron	ENST00000476350	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11C-01A	MACF1	chr1	39916883	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000356554	ENST00000425013		TCGA	RV	LIHC	TCGA-CC-5260-01A	MAN1A2	chr1	117911107	+	RNF216	chr7	5817259	-
5CDS-intron	ENST00000356554	ENST00000389902		TCGA	RV	LIHC	TCGA-CC-5260-01A	MAN1A2	chr1	117911107	+	RNF216	chr7	5817259	-
5CDS-intron	ENST00000356554	ENST00000469375		TCGA	RV	LIHC	TCGA-CC-5260-01A	MAN1A2	chr1	117911107	+	RNF216	chr7	5817259	-
3UTR-intron	ENST00000482811	ENST00000425013		TCGA	RV	LIHC	TCGA-CC-5260-01A	MAN1A2	chr1	117911107	+	RNF216	chr7	5817259	-
3UTR-intron	ENST00000482811	ENST00000389902		TCGA	RV	LIHC	TCGA-CC-5260-01A	MAN1A2	chr1	117911107	+	RNF216	chr7	5817259	-
3UTR-intron	ENST00000482811	ENST00000469375		TCGA	RV	LIHC	TCGA-CC-5260-01A	MAN1A2	chr1	117911107	+	RNF216	chr7	5817259	-
Frame-shit	ENST00000280653	ENST00000311127		TCGA	RV	LIHC	TCGA-ED-A97K-01A	MFN1	chr3	179069823	+	HEG1	chr3	124748332	-
5CDS-intron	ENST00000280653	ENST00000477536		TCGA	RV	LIHC	TCGA-ED-A97K-01A	MFN1	chr3	179069823	+	HEG1	chr3	124748332	-
Frame-shit	ENST00000471841	ENST00000311127		TCGA	RV	LIHC	TCGA-ED-A97K-01A	MFN1	chr3	179069823	+	HEG1	chr3	124748332	-
5CDS-intron	ENST00000471841	ENST00000477536		TCGA	RV	LIHC	TCGA-ED-A97K-01A	MFN1	chr3	179069823	+	HEG1	chr3	124748332	-
Frame-shit	ENST00000263969	ENST00000311127		TCGA	RV	LIHC	TCGA-ED-A97K-01A	MFN1	chr3	179069823	+	HEG1	chr3	124748332	-
5CDS-intron	ENST00000263969	ENST00000477536		TCGA	RV	LIHC	TCGA-ED-A97K-01A	MFN1	chr3	179069823	+	HEG1	chr3	124748332	-
5UTR-3UTR	ENST00000261681	ENST00000556046		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
5UTR-intron	ENST00000261681	ENST00000554500		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
5UTR-3UTR	ENST00000555925	ENST00000556046		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
5UTR-intron	ENST00000555925	ENST00000554500		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
3UTR-3UTR	ENST00000554911	ENST00000556046		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
3UTR-intron	ENST00000554911	ENST00000554500		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
5UTR-3UTR	ENST00000556345	ENST00000556046		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
5UTR-intron	ENST00000556345	ENST00000554500		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	MPP5	chr14	67708250	+	FAM71D	chr14	67669811	+
In-frame	ENST00000309993	ENST00000264982		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
In-frame	ENST00000309993	ENST00000542237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
In-frame	ENST00000309993	ENST00000489254		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
In-frame	ENST00000309993	ENST00000484888		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
In-frame	ENST00000309993	ENST00000481834		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
5CDS-5UTR	ENST00000309993	ENST00000478673		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
5CDS-5UTR	ENST00000309993	ENST00000464035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-3CDS	ENST00000434835	ENST00000264982		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-3CDS	ENST00000434835	ENST00000542237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-3CDS	ENST00000434835	ENST00000489254		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-3CDS	ENST00000434835	ENST00000484888		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-3CDS	ENST00000434835	ENST00000481834		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-5UTR	ENST00000434835	ENST00000478673		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
intron-5UTR	ENST00000434835	ENST00000464035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MSL2	chr3	135913814	-	CEP70	chr3	138256189	-
5UTR-3CDS	ENST00000401950	ENST00000544604		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000401950	ENST00000332811		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000401950	ENST00000402174		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000401950	ENST00000406323		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000544604		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000332811		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000402174		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000406323		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000544604		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000332811		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000402174		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000406323		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000544604		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000332811		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000402174		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000406323		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000544604		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000332811		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000402174		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000406323		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000544604		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000332811		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000402174		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000406323		TCGA	RV	LIHC	TCGA-DD-A118-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5CDS-5UTR	ENST00000354329	ENST00000374855		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000354329	ENST00000468981		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
intron-5UTR	ENST00000529578	ENST00000374855		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
intron-intron	ENST00000529578	ENST00000468981		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000533112	ENST00000374855		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000533112	ENST00000468981		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000531253	ENST00000374855		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000531253	ENST00000468981		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000527372	ENST00000374855		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000527372	ENST00000468981		TCGA	RV	LIHC	TCGA-BD-A3EP-01A	MYO18A	chr17	27423779	-	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000441750	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-intron	ENST00000441750	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-intron	ENST00000281513	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5UTR-3CDS	ENST00000349945	ENST00000219343		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
5UTR-3CDS	ENST00000349945	ENST00000566454		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
In-frame	ENST00000432919	ENST00000219343		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
In-frame	ENST00000432919	ENST00000566454		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000354436	ENST00000219343		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000354436	ENST00000566454		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
In-frame	ENST00000567239	ENST00000219343		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
In-frame	ENST00000567239	ENST00000566454		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000393742	ENST00000219343		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000393742	ENST00000566454		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000566899	ENST00000219343		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
intron-3CDS	ENST00000566899	ENST00000566454		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NFAT5	chr16	69602451	+	SLC7A6	chr16	68321649	+
In-frame	ENST00000287878	ENST00000252071		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000287878	ENST00000539352		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
intron-3CDS	ENST00000418337	ENST00000252071		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
intron-3CDS	ENST00000418337	ENST00000539352		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000433631	ENST00000252071		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000433631	ENST00000539352		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000492843	ENST00000252071		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000492843	ENST00000539352		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
Frame-shit	ENST00000392801	ENST00000252071		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
Frame-shit	ENST00000392801	ENST00000539352		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
intron-3CDS	ENST00000461529	ENST00000252071		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
intron-3CDS	ENST00000461529	ENST00000539352		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PRKAG2	chr7	151372506	-	ACTR3C	chr7	149946143	-
Frame-shit	ENST00000310653	ENST00000308436		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
Frame-shit	ENST00000310653	ENST00000476907		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
Frame-shit	ENST00000336083	ENST00000308436		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
Frame-shit	ENST00000336083	ENST00000476907		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
In-frame	ENST00000536566	ENST00000308436		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
In-frame	ENST00000536566	ENST00000476907		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
intron-3CDS	ENST00000541588	ENST00000308436		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
intron-3CDS	ENST00000541588	ENST00000476907		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RAB6A	chr11	73418465	-	TUT1	chr11	62344763	-
intron-5UTR	ENST00000358495	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000358495	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000358495	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000358495	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000358495	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000358495	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
5UTR-5UTR	ENST00000430095	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
5UTR-5UTR	ENST00000430095	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
5UTR-intron	ENST00000430095	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
5UTR-intron	ENST00000430095	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
5UTR-5UTR	ENST00000430095	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
5UTR-intron	ENST00000430095	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000539046	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000539046	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000539046	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000539046	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000539046	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000539046	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000536177	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000536177	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000536177	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000536177	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000536177	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000536177	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000544742	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000544742	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000544742	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000544742	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000544742	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000544742	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000541619	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000541619	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000541619	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000541619	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000541619	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000541619	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000535376	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000535376	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000535376	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000535376	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000535376	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000535376	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000545564	ENST00000381352		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000545564	ENST00000405154		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000545564	ENST00000542865		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000545564	ENST00000541490		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000545564	ENST00000282884		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-intron	ENST00000545564	ENST00000538081		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	RAD52	chr12	1098975	-	RASSF8	chr12	26208169	+
intron-5UTR	ENST00000432519	ENST00000331737		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000361310		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000413025		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000436087		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000452305		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000442986		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000538351		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000432519	ENST00000375311		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-intron	ENST00000432519	ENST00000444692		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000331737		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000361310		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000413025		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000436087		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000452305		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000442986		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000538351		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-5UTR	ENST00000334133	ENST00000375311		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
5CDS-intron	ENST00000334133	ENST00000444692		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000331737		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000361310		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000413025		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000436087		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000452305		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000442986		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000538351		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-5UTR	ENST00000483671	ENST00000375311		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
intron-intron	ENST00000483671	ENST00000444692		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	RFTN1	chr3	16535232	-	ZNF438	chr10	31230580	-
Frame-shit	ENST00000304685	ENST00000448150		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000304685	ENST00000367649		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-3UTR	ENST00000304685	ENST00000465723		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-intron	ENST00000304685	ENST00000462775		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000536277	ENST00000448150		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000536277	ENST00000367649		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-3UTR	ENST00000536277	ENST00000465723		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-intron	ENST00000536277	ENST00000462775		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000360851	ENST00000448150		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000360851	ENST00000367649		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-3UTR	ENST00000360851	ENST00000465723		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-intron	ENST00000360851	ENST00000462775		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000539189	ENST00000448150		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
Frame-shit	ENST00000539189	ENST00000367649		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-3UTR	ENST00000539189	ENST00000465723		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5CDS-intron	ENST00000539189	ENST00000462775		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	RGL1	chr1	183854072	+	RASAL2	chr1	178252699	+
5UTR-3CDS	ENST00000348370	ENST00000438423		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000348370	ENST00000267811		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000348370	ENST00000452095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000348370	ENST00000333725		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000348370	ENST00000557843		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000348370	ENST00000560764		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000348370	ENST00000543579		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000348370	ENST00000537840		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000348370	ENST00000343827		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000348370	ENST00000559710		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000348370	ENST00000559703		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000434298	ENST00000438423		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000434298	ENST00000267811		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000434298	ENST00000452095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000434298	ENST00000333725		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000434298	ENST00000557843		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000434298	ENST00000560764		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000434298	ENST00000543579		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000434298	ENST00000537840		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000434298	ENST00000343827		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000434298	ENST00000559710		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000434298	ENST00000559703		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000559209	ENST00000438423		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000559209	ENST00000267811		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000559209	ENST00000452095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000559209	ENST00000333725		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-3CDS	ENST00000559209	ENST00000557843		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000559209	ENST00000560764		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000559209	ENST00000543579		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000559209	ENST00000537840		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000559209	ENST00000343827		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000559209	ENST00000559710		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
5UTR-intron	ENST00000559209	ENST00000559703		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000557998	ENST00000438423		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000557998	ENST00000267811		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000557998	ENST00000452095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000557998	ENST00000333725		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000557998	ENST00000557843		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000557998	ENST00000560764		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000557998	ENST00000543579		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000557998	ENST00000537840		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000557998	ENST00000343827		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000557998	ENST00000559710		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000557998	ENST00000559703		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000561186	ENST00000438423		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000561186	ENST00000267811		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000561186	ENST00000452095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000561186	ENST00000333725		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000561186	ENST00000557843		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000561186	ENST00000560764		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000561186	ENST00000543579		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000561186	ENST00000537840		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000561186	ENST00000343827		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000561186	ENST00000559710		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000561186	ENST00000559703		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000560080	ENST00000438423		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000560080	ENST00000267811		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000560080	ENST00000452095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000560080	ENST00000333725		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-3CDS	ENST00000560080	ENST00000557843		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000560080	ENST00000560764		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000560080	ENST00000543579		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000560080	ENST00000537840		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000560080	ENST00000343827		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000560080	ENST00000559710		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
intron-intron	ENST00000560080	ENST00000559703		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	RNF111	chr15	59280267	+	TCF12	chr15	57565228	+
Frame-shit	ENST00000324342	ENST00000372544		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	RNF128	chrX	105937638	+	CXorf57	chrX	105891543	+
Frame-shit	ENST00000324342	ENST00000372548		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	RNF128	chrX	105937638	+	CXorf57	chrX	105891543	+
5CDS-3UTR	ENST00000324342	ENST00000497124		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	RNF128	chrX	105937638	+	CXorf57	chrX	105891543	+
intron-3CDS	ENST00000255499	ENST00000372544		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	RNF128	chrX	105937638	+	CXorf57	chrX	105891543	+
intron-3CDS	ENST00000255499	ENST00000372548		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	RNF128	chrX	105937638	+	CXorf57	chrX	105891543	+
intron-3UTR	ENST00000255499	ENST00000497124		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	RNF128	chrX	105937638	+	CXorf57	chrX	105891543	+
Frame-shit	ENST00000292123	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
Frame-shit	ENST00000592224	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
3UTR-3CDS	ENST00000586934	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
Frame-shit	ENST00000454510	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
Frame-shit	ENST00000433404	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
Frame-shit	ENST00000588852	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
Frame-shit	ENST00000538656	ENST00000381781		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	SAFB	chr19	5645410	+	ARRDC5	chr19	4891585	-
intron-intron	ENST00000440909	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000440909	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000448921	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000437397	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000355814	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000393087	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-5UTR	ENST00000393088	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000404814	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000449399	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000402629	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000548898		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000552067		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000420846		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000548160		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000546939		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000552692		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000555289	ENST00000549117		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000257857		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000552754		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000550776		TCGA	RV	LIHC	TCGA-2V-A95S-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000440909	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000440909	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000448921	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000448921	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000437397	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000437397	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000355814	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000355814	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000393087	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000393087	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-5UTR	ENST00000393088	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000393088	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000404814	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000404814	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000449399	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000449399	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000402629	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000402629	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000548898		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000552067		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000420846		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000548160		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000546939		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000552692		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-5UTR	ENST00000555289	ENST00000549117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000257857		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000552754		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
intron-intron	ENST00000555289	ENST00000550776		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	SERPINA1	chr14	94844713	-	CD63	chr12	56123444	-
5CDS-intron	ENST00000440909	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000440909	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000440909	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000440909	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000440909	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000440909	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000440909	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000448921	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000437397	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000355814	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393087	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000257261		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000522056		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000278840		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000521849		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000574708		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000522639		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000517839		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	SERPINA1	chr14	94843084	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000448921	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000437397	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000355814	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000393087	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000393088	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000404814	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000449399	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000402629	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000257261		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000522056		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000278840		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000521849		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000574708		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000522639		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000555289	ENST00000517839		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844686	-	FADS2	chr11	61588853	+
intron-intron	ENST00000440909	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000440909	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000440909	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000448921	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000448921	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000448921	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000437397	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000437397	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000437397	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000355814	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000355814	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000355814	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000393087	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000393087	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000393087	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000393088	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000393088	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000393088	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
5CDS-intron	ENST00000404814	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
5CDS-intron	ENST00000404814	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
5CDS-intron	ENST00000404814	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000449399	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000449399	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000449399	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000402629	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000402629	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000402629	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000555289	ENST00000379214		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000555289	ENST00000389858		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-intron	ENST00000555289	ENST00000480977		TCGA	RV	LIHC	TCGA-ED-A66Y-01A	SERPINA1	chr14	94844726	-	LGR4	chr11	27494322	-
intron-5UTR	ENST00000440909	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000440909	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000448921	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000448921	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000437397	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000437397	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000355814	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000355814	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000393087	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000393087	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000393088	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000393088	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
5CDS-5UTR	ENST00000404814	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
5CDS-5UTR	ENST00000404814	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000449399	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000449399	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000402629	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000402629	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000555289	ENST00000548553		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-5UTR	ENST00000555289	ENST00000332160		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SERPINA1	chr14	94844726	-	METTL7A	chr12	51318534	+
intron-intron	ENST00000440909	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000440909	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000448921	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000448921	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000437397	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000437397	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000355814	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000355814	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000393087	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000393087	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000393088	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000393088	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000404814	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000404814	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
5CDS-intron	ENST00000449399	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
5CDS-intron	ENST00000449399	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000402629	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000402629	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000555289	ENST00000373570		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
intron-intron	ENST00000555289	ENST00000348462		TCGA	RV	LIHC	TCGA-DD-AACK-01A	SERPINA1	chr14	94844786	-	RPL35	chr9	127624240	-
In-frame	ENST00000393078	ENST00000226299		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
In-frame	ENST00000393078	ENST00000606142		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
5CDS-intron	ENST00000393078	ENST00000503467		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000485588	ENST00000226299		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
intron-3CDS	ENST00000485588	ENST00000606142		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
intron-intron	ENST00000485588	ENST00000503467		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
In-frame	ENST00000393080	ENST00000226299		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
In-frame	ENST00000393080	ENST00000606142		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
5CDS-intron	ENST00000393080	ENST00000503467		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000467132	ENST00000226299		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000467132	ENST00000606142		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
5CDS-intron	ENST00000467132	ENST00000503467		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
In-frame	ENST00000482740	ENST00000226299		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
In-frame	ENST00000482740	ENST00000606142		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
5CDS-intron	ENST00000482740	ENST00000503467		TCGA	RV	LIHC	TCGA-HP-A5MZ-01A	SERPINA3	chr14	95090392	+	LAP3	chr4	17585225	+
Frame-shit	ENST00000278407	ENST00000280326		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000278407	ENST00000503026		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000278407	ENST00000515390		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000278407	ENST00000515676		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000278407	ENST00000506600		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000340687	ENST00000280326		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000340687	ENST00000503026		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000340687	ENST00000515390		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000340687	ENST00000515676		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000340687	ENST00000506600		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000378323	ENST00000280326		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000378323	ENST00000503026		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000378323	ENST00000515390		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000378323	ENST00000515676		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000378323	ENST00000506600		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000378324	ENST00000280326		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000378324	ENST00000503026		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000378324	ENST00000515390		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000378324	ENST00000515676		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000378324	ENST00000506600		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000403558	ENST00000280326		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000403558	ENST00000503026		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000403558	ENST00000515390		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000403558	ENST00000515676		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000403558	ENST00000506600		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000531605	ENST00000280326		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000531605	ENST00000503026		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000531605	ENST00000515390		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000531605	ENST00000515676		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-intron	ENST00000531605	ENST00000506600		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	SERPING1	chr11	57382320	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000474528	ENST00000258098		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73303310	-
intron-5UTR	ENST00000474528	ENST00000493523		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73303310	-
Frame-shit	ENST00000272433	ENST00000258098		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73303310	-
5CDS-5UTR	ENST00000272433	ENST00000493523		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73303310	-
Frame-shit	ENST00000410065	ENST00000258098		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73303310	-
5CDS-5UTR	ENST00000410065	ENST00000493523		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73303310	-
intron-5UTR	ENST00000290902	ENST00000382952		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000290902	ENST00000290921		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000290902	ENST00000510568		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000290902	ENST00000515690		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000431380	ENST00000382952		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000431380	ENST00000290921		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000431380	ENST00000510568		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000431380	ENST00000515690		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000400762	ENST00000382952		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000400762	ENST00000290921		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000400762	ENST00000510568		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000400762	ENST00000515690		TCGA	RV	LIHC	TCGA-G3-A3CK-01A	SPON2	chr4	1195057	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000290902	ENST00000382952		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000290902	ENST00000290921		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000290902	ENST00000510568		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000290902	ENST00000515690		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000431380	ENST00000382952		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000431380	ENST00000290921		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000431380	ENST00000510568		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000431380	ENST00000515690		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000400762	ENST00000382952		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000400762	ENST00000290921		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000400762	ENST00000510568		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000400762	ENST00000515690		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	SPON2	chr4	1198770	-	CTBP1	chr4	1235307	-
In-frame	ENST00000262915	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000262915	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000262915	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000262915	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372375	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372375	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372375	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372375	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000351035	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000351035	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000351035	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000351035	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372374	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372374	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372374	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372374	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000353126	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000353126	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000353126	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000353126	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000545417	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000545417	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000545417	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000545417	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000330208	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000330208	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000330208	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000330208	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000335430	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000335430	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000335430	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000335430	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372377	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372377	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372377	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372377	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361392	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361392	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361392	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000361392	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000361400	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000361400	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000361400	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000361400	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000347631	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000347631	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000347631	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000347631	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361812	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361812	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361812	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000361812	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372362	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372362	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372362	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372362	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531451	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531451	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531451	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000531451	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372366	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372366	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372366	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000372366	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372365	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372365	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372365	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372365	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372368	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372368	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372368	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372368	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000332628	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000332628	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000332628	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000332628	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372372	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372372	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372372	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000372372	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531816	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531816	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531816	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000531816	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000528371	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000528371	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000528371	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000528371	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372369	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372369	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000372369	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000372369	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531993	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531993	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000531993	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000531993	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361746	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361746	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000361746	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000361746	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000533933	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000533933	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
In-frame	ENST00000533933	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
5CDS-5UTR	ENST00000533933	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372367	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372367	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-3CDS	ENST00000372367	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000372367	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
3UTR-3CDS	ENST00000461375	ENST00000212355		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
3UTR-3CDS	ENST00000461375	ENST00000370399		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
3UTR-3CDS	ENST00000461375	ENST00000525962		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
3UTR-5UTR	ENST00000461375	ENST00000468996		TCGA	RV	LIHC	TCGA-LG-A6GG-01A	ST3GAL3	chr1	44257820	+	TGFBR3	chr1	92195530	-
intron-5UTR	ENST00000227495	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000227495	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000227495	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000444328	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000444328	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000444328	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000356132	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000356132	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000356132	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
5UTR-5UTR	ENST00000530591	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
5UTR-intron	ENST00000530591	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
5UTR-intron	ENST00000530591	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
5UTR-5UTR	ENST00000534083	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
5UTR-intron	ENST00000534083	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
5UTR-intron	ENST00000534083	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000392669	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000392669	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000392669	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000526756	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000526756	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000526756	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000526727	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000526727	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000526727	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000449406	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000449406	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000449406	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000532243	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000532243	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000532243	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-5UTR	ENST00000534457	ENST00000356438		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000534457	ENST00000425380		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
intron-intron	ENST00000534457	ENST00000526028		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST3GAL4	chr11	126226197	+	HYLS1	chr11	125768999	+
Frame-shit	ENST00000375331	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375331	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
Frame-shit	ENST00000375333	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5CDS-intron	ENST00000375333	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-3CDS	ENST00000463823	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
3UTR-intron	ENST00000463823	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000551718	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000551718	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000425138	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000425138	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000433397	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000433397	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000490195	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000490195	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000549310	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549310	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000426802	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000426802	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000452688	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000452688	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000460232	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000460232	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000549916	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000549916	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000444147	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000444147	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000431383	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000431383	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000465050	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000465050	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000547578	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000547578	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000383328	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383328	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000383327	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000383327	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000469629	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000469629	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000550656	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000550656	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000424104	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000424104	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000438256	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000438256	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-3CDS	ENST00000493840	ENST00000375825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000430366		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000419389		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000420378		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000455955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000444880		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000400084		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000440095		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
intron-intron	ENST00000493840	ENST00000434515		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	STK19	chr6	31947330	+	LY6G6D	chr6	31683279	+
5UTR-3CDS	ENST00000375751	ENST00000303617		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-3CDS	ENST00000375751	ENST00000375731		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-3CDS	ENST00000375751	ENST00000422391		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-5UTR	ENST00000375751	ENST00000478465		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-3CDS	ENST00000375754	ENST00000303617		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-3CDS	ENST00000375754	ENST00000375731		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-3CDS	ENST00000375754	ENST00000422391		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5UTR-5UTR	ENST00000375754	ENST00000478465		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000375747	ENST00000303617		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000375747	ENST00000375731		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000375747	ENST00000422391		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-5UTR	ENST00000375747	ENST00000478465		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000476708	ENST00000303617		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000476708	ENST00000375731		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000476708	ENST00000422391		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-5UTR	ENST00000476708	ENST00000478465		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000375746	ENST00000303617		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000375746	ENST00000375731		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-3CDS	ENST00000375746	ENST00000422391		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
intron-5UTR	ENST00000375746	ENST00000478465		TCGA	RV	LIHC	TCGA-G3-A25X-01A	SYK	chr9	93564175	+	AUH	chr9	94060358	-
5CDS-5UTR	ENST00000282111	ENST00000338586		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000338515		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000367171		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000367169		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000539706		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000339876		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000367170		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000360049		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000367172		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000403080		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000404076		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000401399		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000282111	ENST00000404907		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-intron	ENST00000282111	ENST00000513543		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-intron	ENST00000282111	ENST00000495396		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000338586		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000338515		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000367171		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000367169		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000539706		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000339876		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000367170		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000360049		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000367172		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000403080		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000404076		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000401399		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-5UTR	ENST00000494519	ENST00000404907		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-intron	ENST00000494519	ENST00000513543		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
3UTR-intron	ENST00000494519	ENST00000495396		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	TCF7L1	chr2	85361573	+	NFASC	chr1	204913354	+
5CDS-5UTR	ENST00000291574	ENST00000291572		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000398061		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000327505		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000398063		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000398058		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
5CDS-5UTR	ENST00000291574	ENST00000546158		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
5CDS-intron	ENST00000291574	ENST00000479117		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000380221	ENST00000291572		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000380221	ENST00000398061		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000380221	ENST00000327505		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000380221	ENST00000398063		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000380221	ENST00000398058		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000380221	ENST00000546158		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-intron	ENST00000380221	ENST00000479117		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000291572		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000398061		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000327505		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000398063		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000398058		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-5UTR	ENST00000483973	ENST00000546158		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
intron-intron	ENST00000483973	ENST00000479117		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRAPPC10	chr21	45483666	+	AGPAT3	chr21	45379515	+
In-frame	ENST00000441669	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000441669	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000441669	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000441669	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000441669	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
In-frame	ENST00000316891	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000316891	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000316891	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000316891	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000316891	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
In-frame	ENST00000372818	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000372818	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000372818	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000372818	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000372818	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000491865	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000491865	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000491865	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000491865	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000491865	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000541099	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000541099	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000541099	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000541099	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000541099	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000537440	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000537440	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000537440	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000537440	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000537440	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000537223	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000537223	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000537223	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000537223	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000537223	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000545233	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000545233	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-3CDS	ENST00000545233	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000545233	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5UTR-intron	ENST00000545233	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
In-frame	ENST00000544981	ENST00000416101		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000544981	ENST00000269081		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
Frame-shit	ENST00000544981	ENST00000432313		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000544981	ENST00000519732		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
5CDS-intron	ENST00000544981	ENST00000423818		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ABCA10	chr17	67193263	-
intron-3CDS	ENST00000476901	ENST00000361906		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000476901	ENST00000361684		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
intron-intron	ENST00000476901	ENST00000504337		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000290846	ENST00000361906		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000290846	ENST00000361684		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
5CDS-intron	ENST00000290846	ENST00000504337		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000381019	ENST00000361906		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000381019	ENST00000361684		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
5CDS-intron	ENST00000381019	ENST00000504337		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000424260	ENST00000361906		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
Frame-shit	ENST00000424260	ENST00000361684		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
5CDS-intron	ENST00000424260	ENST00000504337		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	TRMU	chr22	46733841	+	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000442235	ENST00000233331		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
5UTR-3CDS	ENST00000442235	ENST00000409917		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
5UTR-intron	ENST00000442235	ENST00000469849		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
Frame-shit	ENST00000410003	ENST00000233331		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
Frame-shit	ENST00000410003	ENST00000409917		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
5CDS-intron	ENST00000410003	ENST00000469849		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
Frame-shit	ENST00000233623	ENST00000233331		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
Frame-shit	ENST00000233623	ENST00000409917		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
5CDS-intron	ENST00000233623	ENST00000469849		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
3UTR-3CDS	ENST00000463189	ENST00000233331		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
3UTR-3CDS	ENST00000463189	ENST00000409917		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
3UTR-intron	ENST00000463189	ENST00000469849		TCGA	RV	LIHC	TCGA-DD-A73G-01A	TTC31	chr2	74710537	+	INO80B	chr2	74682533	+
5CDS-5UTR	ENST00000375217	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375217	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375217	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375217	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375217	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-intron	ENST00000375217	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375226	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375226	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375226	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375226	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375226	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-intron	ENST00000375226	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375267	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375267	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375267	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375267	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375267	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-intron	ENST00000375267	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375254	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375254	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375254	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375254	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-5UTR	ENST00000375254	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
5CDS-intron	ENST00000375254	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375225	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375225	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375225	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375225	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375225	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-intron	ENST00000375225	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000429347	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000429347	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000429347	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000429347	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000429347	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-intron	ENST00000429347	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375224	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375224	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375224	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375224	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375224	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-intron	ENST00000375224	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000543981	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000543981	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000543981	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000543981	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000543981	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-intron	ENST00000543981	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000467272	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000467272	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000467272	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000467272	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000467272	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-intron	ENST00000467272	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375218	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375218	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375218	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375218	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-5UTR	ENST00000375218	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
intron-intron	ENST00000375218	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-A73F-01A	UBR4	chr1	19437236	-	ALB	chr4	74270021	+
Frame-shit	ENST00000398571	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
Frame-shit	ENST00000398571	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
intron-3CDS	ENST00000472689	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
intron-3CDS	ENST00000472689	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
5UTR-5UTR	ENST00000378308	ENST00000306601		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000378308	ENST00000427146		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000378308	ENST00000366471		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000378308	ENST00000366469		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000378308	ENST00000451251		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-intron	ENST00000378308	ENST00000468455		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000378308	ENST00000391820		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000324545	ENST00000306601		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000324545	ENST00000427146		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000324545	ENST00000366471		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000324545	ENST00000366469		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000324545	ENST00000451251		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-intron	ENST00000324545	ENST00000468455		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
5UTR-5UTR	ENST00000324545	ENST00000391820		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	USP9X	chrX	40945362	+	ZNF692	chr1	249152520	-
Frame-shit	ENST00000225298	ENST00000403888		TCGA	RV	LIHC	TCGA-5R-AAAM-01A	UTP18	chr17	49346265	+	KCTD17	chr22	37455353	+
Frame-shit	ENST00000225298	ENST00000402077		TCGA	RV	LIHC	TCGA-5R-AAAM-01A	UTP18	chr17	49346265	+	KCTD17	chr22	37455353	+
5UTR-3CDS	ENST00000317025	ENST00000506646		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-intron	ENST00000317025	ENST00000507078		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000317025	ENST00000338977		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000317025	ENST00000511833		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-3CDS	ENST00000433384	ENST00000506646		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-intron	ENST00000433384	ENST00000507078		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000433384	ENST00000338977		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000433384	ENST00000511833		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-3CDS	ENST00000527502	ENST00000506646		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-intron	ENST00000527502	ENST00000507078		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000527502	ENST00000338977		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000527502	ENST00000511833		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-3CDS	ENST00000316985	ENST00000506646		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-intron	ENST00000316985	ENST00000507078		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000316985	ENST00000338977		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
5UTR-5UTR	ENST00000316985	ENST00000511833		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
intron-3CDS	ENST00000525081	ENST00000506646		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
intron-intron	ENST00000525081	ENST00000507078		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
intron-5UTR	ENST00000525081	ENST00000338977		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
intron-5UTR	ENST00000525081	ENST00000511833		TCGA	RV	LIHC	TCGA-G3-A25X-01A	WHSC1L1	chr8	38239317	-	ZNF721	chr4	438221	-
intron-3UTR	ENST00000469100	ENST00000588752		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
intron-5UTR	ENST00000469100	ENST00000589238		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
intron-5UTR	ENST00000469100	ENST00000269159		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
intron-5UTR	ENST00000469100	ENST00000588927		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
5CDS-3UTR	ENST00000373477	ENST00000588752		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
5CDS-5UTR	ENST00000373477	ENST00000589238		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
5CDS-5UTR	ENST00000373477	ENST00000269159		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
5CDS-5UTR	ENST00000373477	ENST00000588927		TCGA	RV	LIHC	TCGA-DD-A73G-01A	YARS	chr1	33251963	-	IMPA2	chr18	12009882	+
5UTR-3CDS	ENST00000331737	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000331737	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-intron	ENST00000331737	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000361310	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000361310	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-intron	ENST00000361310	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-3CDS	ENST00000413025	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-3CDS	ENST00000413025	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-intron	ENST00000413025	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000436087	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000436087	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-intron	ENST00000436087	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000452305	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000452305	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-intron	ENST00000452305	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000442986	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000442986	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-intron	ENST00000442986	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000538351	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-3CDS	ENST00000538351	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
5UTR-intron	ENST00000538351	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-3CDS	ENST00000375311	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-3CDS	ENST00000375311	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-intron	ENST00000375311	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-3CDS	ENST00000444692	ENST00000432519		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-3CDS	ENST00000444692	ENST00000334133		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
intron-intron	ENST00000444692	ENST00000483671		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ZNF438	chr10	31273298	-	RFTN1	chr3	16475544	-
Frame-shit	ENST00000307624	ENST00000320672		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
Frame-shit	ENST00000307624	ENST00000509053		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
Frame-shit	ENST00000307624	ENST00000514493		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5CDS-intron	ENST00000307624	ENST00000510060		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5CDS-intron	ENST00000307624	ENST00000505980		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5CDS-intron	ENST00000307624	ENST00000515395		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5UTR-3CDS	ENST00000508234	ENST00000320672		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5UTR-3CDS	ENST00000508234	ENST00000509053		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5UTR-3CDS	ENST00000508234	ENST00000514493		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5UTR-intron	ENST00000508234	ENST00000510060		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5UTR-intron	ENST00000508234	ENST00000505980		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
5UTR-intron	ENST00000508234	ENST00000515395		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
intron-3CDS	ENST00000513751	ENST00000320672		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
intron-3CDS	ENST00000513751	ENST00000509053		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
intron-3CDS	ENST00000513751	ENST00000514493		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
intron-intron	ENST00000513751	ENST00000510060		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
intron-intron	ENST00000513751	ENST00000505980		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
intron-intron	ENST00000513751	ENST00000515395		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ACOT12	chr5	80631587	-	SSBP2	chr5	80785128	-
Frame-shit	ENST00000357430	ENST00000357276		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	ACSL3	chr2	223795530	+	SMARCAL1	chr2	217341832	+
Frame-shit	ENST00000357430	ENST00000358207		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	ACSL3	chr2	223795530	+	SMARCAL1	chr2	217341832	+
5CDS-intron	ENST00000357430	ENST00000479008		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	ACSL3	chr2	223795530	+	SMARCAL1	chr2	217341832	+
Frame-shit	ENST00000392066	ENST00000357276		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	ACSL3	chr2	223795530	+	SMARCAL1	chr2	217341832	+
Frame-shit	ENST00000392066	ENST00000358207		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	ACSL3	chr2	223795530	+	SMARCAL1	chr2	217341832	+
5CDS-intron	ENST00000392066	ENST00000479008		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	ACSL3	chr2	223795530	+	SMARCAL1	chr2	217341832	+
In-frame	ENST00000264167	ENST00000286063		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
In-frame	ENST00000264167	ENST00000358450		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
5CDS-intron	ENST00000264167	ENST00000450799		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
5CDS-intron	ENST00000264167	ENST00000409504		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
5CDS-intron	ENST00000264167	ENST00000389683		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
5CDS-intron	ENST00000264167	ENST00000449286		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
5CDS-5UTR	ENST00000264167	ENST00000497003		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-3CDS	ENST00000409888	ENST00000286063		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-3CDS	ENST00000409888	ENST00000358450		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-intron	ENST00000409888	ENST00000450799		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-intron	ENST00000409888	ENST00000409504		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-intron	ENST00000409888	ENST00000389683		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-intron	ENST00000409888	ENST00000449286		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
intron-5UTR	ENST00000409888	ENST00000497003		TCGA	RV	LIHC	TCGA-FV-A496-01A	AGPS	chr2	178299145	+	PDE11A	chr2	178576606	-
Frame-shit	ENST00000367990	ENST00000381340		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000367990	ENST00000545902		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000367990	ENST00000242737		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000468465	ENST00000381340		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000468465	ENST00000545902		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000468465	ENST00000242737		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000463812	ENST00000381340		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000463812	ENST00000545902		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000463812	ENST00000242737		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
Frame-shit	ENST00000470459	ENST00000381340		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-5UTR	ENST00000470459	ENST00000545902		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5CDS-intron	ENST00000470459	ENST00000242737		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-3CDS	ENST00000464492	ENST00000381340		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-5UTR	ENST00000464492	ENST00000545902		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-intron	ENST00000464492	ENST00000242737		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-3CDS	ENST00000491350	ENST00000381340		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-5UTR	ENST00000491350	ENST00000545902		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
intron-intron	ENST00000491350	ENST00000242737		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	APOA2	chr1	161192082	-	ITPR2	chr12	26775338	-
5UTR-3CDS	ENST00000409652	ENST00000261726		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	APOL6	chr22	36044670	+	CUX2	chr12	111772245	+
5UTR-intron	ENST00000409652	ENST00000551604		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	APOL6	chr22	36044670	+	CUX2	chr12	111772245	+
5CDS-5UTR	ENST00000374690	ENST00000338488		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000374690	ENST00000395097		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000374690	ENST00000330847		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
3UTR-5UTR	ENST00000513847	ENST00000338488		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
3UTR-5UTR	ENST00000513847	ENST00000395097		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
3UTR-intron	ENST00000513847	ENST00000330847		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000504326	ENST00000338488		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000504326	ENST00000395097		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000504326	ENST00000330847		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000396044	ENST00000338488		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000396044	ENST00000395097		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000396044	ENST00000330847		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000396043	ENST00000338488		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000396043	ENST00000395097		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000396043	ENST00000330847		TCGA	RV	LIHC	TCGA-G3-A7M8-01A	AR	chrX	66863249	+	NR4A3	chr9	102587941	+
Frame-shit	ENST00000223368	ENST00000305632		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
5CDS-5UTR	ENST00000223368	ENST00000459913		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
5CDS-5UTR	ENST00000223368	ENST00000432538		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
5CDS-5UTR	ENST00000223368	ENST00000452475		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
Frame-shit	ENST00000411832	ENST00000305632		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
5CDS-5UTR	ENST00000411832	ENST00000459913		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
5CDS-5UTR	ENST00000411832	ENST00000432538		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
5CDS-5UTR	ENST00000411832	ENST00000452475		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
intron-3CDS	ENST00000482231	ENST00000305632		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
intron-5UTR	ENST00000482231	ENST00000459913		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
intron-5UTR	ENST00000482231	ENST00000432538		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
intron-5UTR	ENST00000482231	ENST00000452475		TCGA	RV	LIHC	TCGA-DD-A115-01A	BCL7B	chr7	72971817	-	TBL2	chr7	72988843	-
3UTR-3CDS	ENST00000339834	ENST00000448841		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
3UTR-3CDS	ENST00000339834	ENST00000369889		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
3UTR-3CDS	ENST00000369883	ENST00000448841		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
3UTR-3CDS	ENST00000369883	ENST00000369889		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
Frame-shit	ENST00000525729	ENST00000323468		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
In-frame	ENST00000525729	ENST00000434945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
5CDS-5UTR	ENST00000525729	ENST00000532730		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
5CDS-intron	ENST00000525729	ENST00000375648		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
intron-3CDS	ENST00000526725	ENST00000323468		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
intron-3CDS	ENST00000526725	ENST00000434945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
intron-5UTR	ENST00000526725	ENST00000532730		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
intron-intron	ENST00000526725	ENST00000375648		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
Frame-shit	ENST00000529391	ENST00000323468		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
Frame-shit	ENST00000529391	ENST00000434945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
5CDS-5UTR	ENST00000529391	ENST00000532730		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
5CDS-intron	ENST00000529391	ENST00000375648		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
Frame-shit	ENST00000393084	ENST00000323468		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
In-frame	ENST00000393084	ENST00000434945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
5CDS-5UTR	ENST00000393084	ENST00000532730		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
5CDS-intron	ENST00000393084	ENST00000375648		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	C11orf65	chr11	108332206	-	KDELC2	chr11	108345679	-
intron-3CDS	ENST00000245907	ENST00000326195		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000245907	ENST00000376545		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000245907	ENST00000396515		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000457111		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000452530		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000416932		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000470464		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000419893		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000448939		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000457970		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000475528		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000457078		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000412443		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000546690		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000421608		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000486105		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000383588		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000383587		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000400609		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000485585		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000426219		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000421042		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000552867		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000454094		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000494413		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000423247		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000420257		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000456791		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000245907	ENST00000495194		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000599668	ENST00000326195		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000599668	ENST00000376545		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000599668	ENST00000396515		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000457111		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000452530		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000416932		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000470464		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000419893		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000448939		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000457970		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000475528		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000457078		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000412443		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000546690		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000421608		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000486105		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000383588		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000383587		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000400609		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000485585		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000426219		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000421042		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000552867		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000454094		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000494413		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000423247		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000420257		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000456791		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000599668	ENST00000495194		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	C3	chr19	6677846	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000403396	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000403396	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000403396	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518235	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518235	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000520698	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000520698	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000376931	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000376931	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523267	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523267	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518219	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518219	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523084	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523084	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000292586	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000292586	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000521333	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000521333	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000403396	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000403396	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000403396	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518235	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518235	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518235	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000520698	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000520698	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000520698	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000376931	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000376931	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000376931	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523267	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523267	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523267	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000518219	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518219	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000518219	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000523084	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523084	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000523084	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000292586	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000292586	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000292586	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000367990		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000468465		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000463812		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-3CDS	ENST00000521333	ENST00000470459		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000521333	ENST00000464492		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
intron-intron	ENST00000521333	ENST00000491350		TCGA	RV	LIHC	TCGA-ZS-A9CE-01A	C5orf45	chr5	179263802	-	APOA2	chr1	161193418	-
In-frame	ENST00000264033	ENST00000525131		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	CBL	chr11	119077322	+	PDZD3	chr11	119059349	+
In-frame	ENST00000264033	ENST00000531114		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	CBL	chr11	119077322	+	PDZD3	chr11	119059349	+
In-frame	ENST00000264033	ENST00000355547		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	CBL	chr11	119077322	+	PDZD3	chr11	119059349	+
In-frame	ENST00000264033	ENST00000322712		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	CBL	chr11	119077322	+	PDZD3	chr11	119059349	+
In-frame	ENST00000264033	ENST00000392817		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	CBL	chr11	119077322	+	PDZD3	chr11	119059349	+
In-frame	ENST00000259199	ENST00000425019		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000324219		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000350198		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000302217		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000413150		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000347699		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000456652		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000259199	ENST00000350878		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
5CDS-intron	ENST00000259199	ENST00000498066		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000425019		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000324219		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000350198		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000302217		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000413150		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000347699		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000456652		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000416503	ENST00000350878		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
5CDS-intron	ENST00000416503	ENST00000498066		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000425019		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000324219		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000350198		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000302217		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000413150		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000347699		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000456652		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
In-frame	ENST00000433343	ENST00000350878		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
5CDS-intron	ENST00000433343	ENST00000498066		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	CBWD2	chr2	114212355	+	MAP4K4	chr2	102481392	+
intron-3CDS	ENST00000335185	ENST00000341049		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000335185	ENST00000393470		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000335185	ENST00000405348		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000335185	ENST00000393468		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000335185	ENST00000393467		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000534415	ENST00000341049		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000534415	ENST00000393470		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000534415	ENST00000405348		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000534415	ENST00000393468		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000534415	ENST00000393467		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000531481	ENST00000341049		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000531481	ENST00000393470		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000531481	ENST00000405348		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000531481	ENST00000393468		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000531481	ENST00000393467		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32815895	-	CAV1	chr7	116199000	+
Frame-shit	ENST00000255409	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AAC8-01A	CHI3L1	chr1	203148059	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000255409	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AAC8-01A	CHI3L1	chr1	203148059	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000255409	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AAC8-01A	CHI3L1	chr1	203148059	-	APOA2	chr1	161193418	-
Frame-shit	ENST00000255409	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AAC8-01A	CHI3L1	chr1	203148059	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000255409	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AAC8-01A	CHI3L1	chr1	203148059	-	APOA2	chr1	161193418	-
5CDS-intron	ENST00000255409	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AAC8-01A	CHI3L1	chr1	203148059	-	APOA2	chr1	161193418	-
intron-3UTR	ENST00000316403	ENST00000202028		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000316403	ENST00000373950		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000316403	ENST00000441639		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000316403	ENST00000373946		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000316403	ENST00000338074		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000316403	ENST00000373941		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000316403	ENST00000479336		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000546343	ENST00000202028		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000546343	ENST00000373950		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000546343	ENST00000441639		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000546343	ENST00000373946		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000546343	ENST00000338074		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000546343	ENST00000373941		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000546343	ENST00000479336		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000560366	ENST00000202028		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000560366	ENST00000373950		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000560366	ENST00000441639		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000560366	ENST00000373946		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000560366	ENST00000338074		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000560366	ENST00000373941		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000560366	ENST00000479336		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000405140	ENST00000202028		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000405140	ENST00000373950		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000405140	ENST00000441639		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000405140	ENST00000373946		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000405140	ENST00000338074		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000405140	ENST00000373941		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
intron-intron	ENST00000405140	ENST00000479336		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000523500	ENST00000202028		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000523500	ENST00000373950		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000523500	ENST00000441639		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000523500	ENST00000373946		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000523500	ENST00000338074		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-intron	ENST00000523500	ENST00000373941		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5CDS-intron	ENST00000523500	ENST00000479336		TCGA	RV	LIHC	TCGA-DD-A73B-01A	CLU	chr8	27455514	-	EPB41L1	chr20	34818077	+
5UTR-3CDS	ENST00000548567	ENST00000264057		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-3CDS	ENST00000548567	ENST00000409813		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-intron	ENST00000548567	ENST00000489613		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
In-frame	ENST00000351328	ENST00000264057		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
In-frame	ENST00000351328	ENST00000409813		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5CDS-intron	ENST00000351328	ENST00000489613		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-3CDS	ENST00000542324	ENST00000264057		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-3CDS	ENST00000542324	ENST00000409813		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-intron	ENST00000542324	ENST00000489613		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
In-frame	ENST00000258415	ENST00000295709		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CYP27A1	chr2	219647160	+	STK36	chr2	219538348	+
In-frame	ENST00000258415	ENST00000392106		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CYP27A1	chr2	219647160	+	STK36	chr2	219538348	+
In-frame	ENST00000258415	ENST00000392105		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CYP27A1	chr2	219647160	+	STK36	chr2	219538348	+
In-frame	ENST00000258415	ENST00000440309		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CYP27A1	chr2	219647160	+	STK36	chr2	219538348	+
3UTR-3CDS	ENST00000464755	ENST00000225235		TCGA	RV	LIHC	TCGA-DD-AAVR-01A	CYP2C19	chr10	96541754	+	TBC1D12	chr10	96290959	+
3UTR-3UTR	ENST00000464755	ENST00000485048		TCGA	RV	LIHC	TCGA-DD-AAVR-01A	CYP2C19	chr10	96541754	+	TBC1D12	chr10	96290959	+
Frame-shit	ENST00000371321	ENST00000225235		TCGA	RV	LIHC	TCGA-DD-AAVR-01A	CYP2C19	chr10	96541754	+	TBC1D12	chr10	96290959	+
5CDS-3UTR	ENST00000371321	ENST00000485048		TCGA	RV	LIHC	TCGA-DD-AAVR-01A	CYP2C19	chr10	96541754	+	TBC1D12	chr10	96290959	+
intron-5UTR	ENST00000563392	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000563392	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000563392	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000570055	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000570055	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000570055	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000563206	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000563206	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000563206	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000451014	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000451014	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000451014	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000568625	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000568625	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000568625	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5CDS-5UTR	ENST00000288071	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5CDS-5UTR	ENST00000288071	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5CDS-5UTR	ENST00000288071	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5UTR-5UTR	ENST00000393657	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5UTR-5UTR	ENST00000393657	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5UTR-5UTR	ENST00000393657	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5CDS-5UTR	ENST00000355992	ENST00000342907		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5CDS-5UTR	ENST00000355992	ENST00000393640		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
5CDS-5UTR	ENST00000355992	ENST00000566097		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	DDX19B	chr16	70333257	+	ST3GAL2	chr16	70433436	-
In-frame	ENST00000260184	ENST00000402744		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	DDX60L	chr4	169393606	-	CPE	chr4	166405574	+
In-frame	ENST00000511577	ENST00000402744		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	DDX60L	chr4	169393606	-	CPE	chr4	166405574	+
In-frame	ENST00000505890	ENST00000402744		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	DDX60L	chr4	169393606	-	CPE	chr4	166405574	+
5UTR-3CDS	ENST00000515088	ENST00000402744		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	DDX60L	chr4	169393606	-	CPE	chr4	166405574	+
Frame-shit	ENST00000526451	ENST00000312106		TCGA	RV	LIHC	TCGA-DD-AADB-01A	EIF1AD	chr11	65766821	-	CATSPER1	chr11	65784645	-
Frame-shit	ENST00000312234	ENST00000312106		TCGA	RV	LIHC	TCGA-DD-AADB-01A	EIF1AD	chr11	65766821	-	CATSPER1	chr11	65784645	-
In-frame	ENST00000525767	ENST00000312106		TCGA	RV	LIHC	TCGA-DD-AADB-01A	EIF1AD	chr11	65766821	-	CATSPER1	chr11	65784645	-
Frame-shit	ENST00000529964	ENST00000312106		TCGA	RV	LIHC	TCGA-DD-AADB-01A	EIF1AD	chr11	65766821	-	CATSPER1	chr11	65784645	-
In-frame	ENST00000533544	ENST00000312106		TCGA	RV	LIHC	TCGA-DD-AADB-01A	EIF1AD	chr11	65766821	-	CATSPER1	chr11	65784645	-
In-frame	ENST00000527249	ENST00000312106		TCGA	RV	LIHC	TCGA-DD-AADB-01A	EIF1AD	chr11	65766821	-	CATSPER1	chr11	65784645	-
5CDS-intron	ENST00000266126	ENST00000238571		TCGA	RV	LIHC	TCGA-DD-A11C-01A	EIF2B2	chr14	75473417	+	YLPM1	chr14	75301968	+
5CDS-intron	ENST00000266126	ENST00000325680		TCGA	RV	LIHC	TCGA-DD-A11C-01A	EIF2B2	chr14	75473417	+	YLPM1	chr14	75301968	+
5CDS-intron	ENST00000266126	ENST00000552421		TCGA	RV	LIHC	TCGA-DD-A11C-01A	EIF2B2	chr14	75473417	+	YLPM1	chr14	75301968	+
5CDS-intron	ENST00000266126	ENST00000546901		TCGA	RV	LIHC	TCGA-DD-A11C-01A	EIF2B2	chr14	75473417	+	YLPM1	chr14	75301968	+
5CDS-5UTR	ENST00000228741	ENST00000273990		TCGA	RV	LIHC	TCGA-ED-A82E-01A	ELK3	chr12	96617551	+	DDIT4L	chr4	101111189	-
5CDS-5UTR	ENST00000552142	ENST00000273990		TCGA	RV	LIHC	TCGA-ED-A82E-01A	ELK3	chr12	96617551	+	DDIT4L	chr4	101111189	-
intron-5UTR	ENST00000549529	ENST00000273990		TCGA	RV	LIHC	TCGA-ED-A82E-01A	ELK3	chr12	96617551	+	DDIT4L	chr4	101111189	-
Frame-shit	ENST00000318522	ENST00000409558		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000318522	ENST00000272322		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000318522	ENST00000354504		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000402711	ENST00000409558		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000402711	ENST00000272322		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000402711	ENST00000354504		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
intron-3CDS	ENST00000482660	ENST00000409558		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
intron-3CDS	ENST00000482660	ENST00000272322		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
intron-3CDS	ENST00000482660	ENST00000354504		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000401738	ENST00000409558		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000401738	ENST00000272322		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
Frame-shit	ENST00000401738	ENST00000354504		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
5UTR-3CDS	ENST00000453191	ENST00000409558		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
5UTR-3CDS	ENST00000453191	ENST00000272322		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
5UTR-3CDS	ENST00000453191	ENST00000354504		TCGA	RV	LIHC	TCGA-BC-A69I-01A	EML4	chr2	42531691	+	VPS54	chr2	64120669	-
In-frame	ENST00000433197	ENST00000258991		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
In-frame	ENST00000433197	ENST00000583097		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
In-frame	ENST00000433197	ENST00000584379		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
5CDS-intron	ENST00000433197	ENST00000581812		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
5UTR-3CDS	ENST00000577567	ENST00000258991		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
5UTR-3CDS	ENST00000577567	ENST00000583097		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
5UTR-3CDS	ENST00000577567	ENST00000584379		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
5UTR-intron	ENST00000577567	ENST00000581812		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
intron-3CDS	ENST00000606895	ENST00000258991		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
intron-3CDS	ENST00000606895	ENST00000583097		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
intron-3CDS	ENST00000606895	ENST00000584379		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
intron-intron	ENST00000606895	ENST00000581812		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ERN1	chr17	62157022	-	TEX2	chr17	62254831	-
5UTR-3CDS	ENST00000303116	ENST00000374279		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM117B	chr2	203500511	+	UGCG	chr9	114676885	+
5UTR-3UTR	ENST00000303116	ENST00000495085		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM117B	chr2	203500511	+	UGCG	chr9	114676885	+
Frame-shit	ENST00000392238	ENST00000374279		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM117B	chr2	203500511	+	UGCG	chr9	114676885	+
5CDS-3UTR	ENST00000392238	ENST00000495085		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM117B	chr2	203500511	+	UGCG	chr9	114676885	+
In-frame	ENST00000259455	ENST00000375019		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
In-frame	ENST00000259455	ENST00000375018		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
In-frame	ENST00000259455	ENST00000353234		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
Frame-shit	ENST00000259455	ENST00000540940		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
5CDS-intron	ENST00000259455	ENST00000471846		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
5UTR-3CDS	ENST00000477471	ENST00000375019		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
5UTR-3CDS	ENST00000477471	ENST00000375018		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
5UTR-3CDS	ENST00000477471	ENST00000353234		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
5UTR-3CDS	ENST00000477471	ENST00000540940		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
5UTR-intron	ENST00000477471	ENST00000471846		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	GABBR2	chr9	101304155	-	ANKS6	chr9	101498905	-
3UTR-3CDS	ENST00000229239	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000229239	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000229239	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000229239	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000229239	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000229239	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396856	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396856	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396861	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396861	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396859	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396859	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000367990		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000468465		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000463812		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000470459		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
5CDS-intron	ENST00000396858	ENST00000464492		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
5CDS-intron	ENST00000396858	ENST00000491350		TCGA	RV	LIHC	TCGA-DD-AACJ-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
In-frame	ENST00000465259	ENST00000465804		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000465259	ENST00000360632		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000465259	ENST00000467467		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000465259	ENST00000474080		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000310053	ENST00000465804		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000310053	ENST00000360632		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000310053	ENST00000467467		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000310053	ENST00000474080		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000392912	ENST00000465804		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000392912	ENST00000360632		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000392912	ENST00000467467		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000392912	ENST00000474080		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000494055	ENST00000465804		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000494055	ENST00000360632		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
In-frame	ENST00000494055	ENST00000467467		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000494055	ENST00000474080		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
intron-3CDS	ENST00000481663	ENST00000465804		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
intron-3CDS	ENST00000481663	ENST00000360632		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
intron-3CDS	ENST00000481663	ENST00000467467		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
intron-intron	ENST00000481663	ENST00000474080		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	HLTF	chr3	148777505	-	WWTR1	chr3	149260324	-
5CDS-5UTR	ENST00000399932	ENST00000374855		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000399932	ENST00000468981		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000301679	ENST00000374855		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000301679	ENST00000468981		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000442458	ENST00000374855		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000442458	ENST00000468981		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000301678	ENST00000374855		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000301678	ENST00000468981		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000450082	ENST00000374855		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000450082	ENST00000468981		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-5UTR	ENST00000600536	ENST00000374855		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
5CDS-intron	ENST00000600536	ENST00000468981		TCGA	RV	LIHC	TCGA-G3-A25U-01A	ITFG3	chr16	311504	+	ALDOB	chr9	104198056	-
In-frame	ENST00000401073	ENST00000288774		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
In-frame	ENST00000401073	ENST00000447513		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
In-frame	ENST00000401073	ENST00000507596		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
5CDS-intron	ENST00000401073	ENST00000515760		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000373481	ENST00000288774		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000373481	ENST00000447513		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000373481	ENST00000507596		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-intron	ENST00000373481	ENST00000515760		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000294521	ENST00000288774		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000294521	ENST00000447513		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000294521	ENST00000507596		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-intron	ENST00000294521	ENST00000515760		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000373480	ENST00000288774		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000373480	ENST00000447513		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-3CDS	ENST00000373480	ENST00000507596		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
intron-intron	ENST00000373480	ENST00000515760		TCGA	RV	LIHC	TCGA-DD-A39Z-01A	KIAA1522	chr1	33207790	+	PEX10	chr1	2341890	-
Frame-shit	ENST00000261667	ENST00000298125		TCGA	RV	LIHC	TCGA-DD-AAW2-01A	KPNA3	chr13	50366574	-	WDFY2	chr13	52234732	+
5CDS-intron	ENST00000261667	ENST00000460145		TCGA	RV	LIHC	TCGA-DD-AAW2-01A	KPNA3	chr13	50366574	-	WDFY2	chr13	52234732	+
In-frame	ENST00000356113	ENST00000438423		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000356113	ENST00000267811		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000356113	ENST00000452095		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000356113	ENST00000333725		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000356113	ENST00000557843		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000356113	ENST00000560764		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000356113	ENST00000543579		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000356113	ENST00000537840		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000356113	ENST00000343827		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000356113	ENST00000559710		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000356113	ENST00000559703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000414170	ENST00000438423		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000414170	ENST00000267811		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000414170	ENST00000452095		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000414170	ENST00000333725		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000414170	ENST00000557843		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000414170	ENST00000560764		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000414170	ENST00000543579		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000414170	ENST00000537840		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000414170	ENST00000343827		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000414170	ENST00000559710		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000414170	ENST00000559703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000299022	ENST00000438423		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000299022	ENST00000267811		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000299022	ENST00000452095		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000299022	ENST00000333725		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000299022	ENST00000557843		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000299022	ENST00000560764		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000299022	ENST00000543579		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000299022	ENST00000537840		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000299022	ENST00000343827		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000299022	ENST00000559710		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000299022	ENST00000559703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000433326	ENST00000438423		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000433326	ENST00000267811		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000433326	ENST00000452095		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000433326	ENST00000333725		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000433326	ENST00000557843		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000433326	ENST00000560764		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000433326	ENST00000543579		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000433326	ENST00000537840		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000433326	ENST00000343827		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000433326	ENST00000559710		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
5CDS-intron	ENST00000433326	ENST00000559703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	LIPC	chr15	58724319	+	TCF12	chr15	57458600	+
In-frame	ENST00000330636	ENST00000503581		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000330636	ENST00000370621		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000330636	ENST00000370616		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000330636	ENST00000393380		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000330636	ENST00000342421		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000330636	ENST00000370618		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
5CDS-intron	ENST00000330636	ENST00000486069		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000468929	ENST00000503581		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000468929	ENST00000370621		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000468929	ENST00000370616		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000468929	ENST00000393380		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000468929	ENST00000342421		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000468929	ENST00000370618		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
5CDS-intron	ENST00000468929	ENST00000486069		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000464010	ENST00000503581		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000464010	ENST00000370621		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000464010	ENST00000370616		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000464010	ENST00000393380		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000464010	ENST00000342421		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000464010	ENST00000370618		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
5CDS-intron	ENST00000464010	ENST00000486069		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000480566	ENST00000503581		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000480566	ENST00000370621		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000480566	ENST00000370616		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000480566	ENST00000393380		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000480566	ENST00000342421		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000480566	ENST00000370618		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
5CDS-intron	ENST00000480566	ENST00000486069		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000500576	ENST00000503581		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000500576	ENST00000370621		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000500576	ENST00000370616		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
In-frame	ENST00000500576	ENST00000393380		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000500576	ENST00000342421		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
Frame-shit	ENST00000500576	ENST00000370618		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
5CDS-intron	ENST00000500576	ENST00000486069		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000606472	ENST00000503581		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000606472	ENST00000370621		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000606472	ENST00000370616		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000606472	ENST00000393380		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000606472	ENST00000342421		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000606472	ENST00000370618		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-intron	ENST00000606472	ENST00000486069		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	LYRM4	chr6	5260881	-	EYS	chr6	66045039	-
intron-3CDS	ENST00000454181	ENST00000399231		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000454181	ENST00000356338		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000454181	ENST00000358212		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000454181	ENST00000399233		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000454181	ENST00000553916		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000558126	ENST00000399231		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000558126	ENST00000356338		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000558126	ENST00000358212		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000558126	ENST00000399233		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000558126	ENST00000553916		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
In-frame	ENST00000267838	ENST00000399231		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
In-frame	ENST00000267838	ENST00000356338		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
In-frame	ENST00000267838	ENST00000358212		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
In-frame	ENST00000267838	ENST00000399233		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
In-frame	ENST00000267838	ENST00000553916		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000560491	ENST00000399231		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000560491	ENST00000356338		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000560491	ENST00000358212		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000560491	ENST00000399233		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
intron-3CDS	ENST00000560491	ENST00000553916		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LYSMD2	chr15	52029547	-	MYO5A	chr15	52613706	-
Frame-shit	ENST00000303391	ENST00000360256		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
5CDS-intron	ENST00000303391	ENST00000330287		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
5CDS-intron	ENST00000303391	ENST00000483822		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
intron-3CDS	ENST00000453960	ENST00000360256		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
intron-intron	ENST00000453960	ENST00000330287		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
intron-intron	ENST00000453960	ENST00000483822		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
Frame-shit	ENST00000407218	ENST00000360256		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
5CDS-intron	ENST00000407218	ENST00000330287		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
5CDS-intron	ENST00000407218	ENST00000483822		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
intron-3CDS	ENST00000460227	ENST00000360256		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
intron-intron	ENST00000460227	ENST00000330287		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
intron-intron	ENST00000460227	ENST00000483822		TCGA	RV	LIHC	TCGA-K7-AAU7-01A	MECP2	chrX	153357642	-	F8	chrX	154185446	-
In-frame	ENST00000369646	ENST00000369162		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
5CDS-intron	ENST00000369646	ENST00000522650		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
5CDS-intron	ENST00000369646	ENST00000369143		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
In-frame	ENST00000257770	ENST00000369162		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
5CDS-intron	ENST00000257770	ENST00000522650		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
5CDS-intron	ENST00000257770	ENST00000369143		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
In-frame	ENST00000369651	ENST00000369162		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
5CDS-intron	ENST00000369651	ENST00000522650		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
5CDS-intron	ENST00000369651	ENST00000369143		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	NT5E	chr6	86160196	+	ASCC3	chr6	101054964	-
In-frame	ENST00000396743	ENST00000376425		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000396743	ENST00000376444		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000396743	ENST00000376441		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5CDS-intron	ENST00000396743	ENST00000473581		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5CDS-intron	ENST00000396743	ENST00000376423		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000156084	ENST00000376425		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000156084	ENST00000376444		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000156084	ENST00000376441		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5CDS-intron	ENST00000156084	ENST00000473581		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5CDS-intron	ENST00000156084	ENST00000376423		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000376488	ENST00000376425		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000376488	ENST00000376444		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
In-frame	ENST00000376488	ENST00000376441		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5CDS-intron	ENST00000376488	ENST00000473581		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5CDS-intron	ENST00000376488	ENST00000376423		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
intron-3CDS	ENST00000428668	ENST00000376425		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
intron-3CDS	ENST00000428668	ENST00000376444		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
intron-3CDS	ENST00000428668	ENST00000376441		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
intron-intron	ENST00000428668	ENST00000473581		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
intron-intron	ENST00000428668	ENST00000376423		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5UTR-3CDS	ENST00000484499	ENST00000376425		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5UTR-3CDS	ENST00000484499	ENST00000376444		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5UTR-3CDS	ENST00000484499	ENST00000376441		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5UTR-intron	ENST00000484499	ENST00000473581		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
5UTR-intron	ENST00000484499	ENST00000376423		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	OTUD5	chrX	48814239	-	GRIPAP1	chrX	48855916	-
Frame-shit	ENST00000307116	ENST00000258214		TCGA	RV	LIHC	TCGA-BC-A10T-01A	P4HA1	chr10	74833489	-	CCDC102A	chr16	57555088	-
Frame-shit	ENST00000373008	ENST00000258214		TCGA	RV	LIHC	TCGA-BC-A10T-01A	P4HA1	chr10	74833489	-	CCDC102A	chr16	57555088	-
Frame-shit	ENST00000263556	ENST00000258214		TCGA	RV	LIHC	TCGA-BC-A10T-01A	P4HA1	chr10	74833489	-	CCDC102A	chr16	57555088	-
Frame-shit	ENST00000412021	ENST00000258214		TCGA	RV	LIHC	TCGA-BC-A10T-01A	P4HA1	chr10	74833489	-	CCDC102A	chr16	57555088	-
Frame-shit	ENST00000440381	ENST00000258214		TCGA	RV	LIHC	TCGA-BC-A10T-01A	P4HA1	chr10	74833489	-	CCDC102A	chr16	57555088	-
Frame-shit	ENST00000394890	ENST00000258214		TCGA	RV	LIHC	TCGA-BC-A10T-01A	P4HA1	chr10	74833489	-	CCDC102A	chr16	57555088	-
Frame-shit	ENST00000376279	ENST00000376335		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
5CDS-3UTR	ENST00000376279	ENST00000477213		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
Frame-shit	ENST00000376286	ENST00000376335		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
5CDS-3UTR	ENST00000376286	ENST00000477213		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
Frame-shit	ENST00000376285	ENST00000376335		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
5CDS-3UTR	ENST00000376285	ENST00000477213		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
intron-3CDS	ENST00000485946	ENST00000376335		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
intron-3UTR	ENST00000485946	ENST00000477213		TCGA	RV	LIHC	TCGA-BC-A112-01A	PCCA	chr13	100861717	+	ZIC2	chr13	100637200	+
5CDS-3UTR	ENST00000371419	ENST00000371497		TCGA	RV	LIHC	TCGA-FV-A496-01A	PFDN4	chr20	52830997	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000371419	ENST00000603338		TCGA	RV	LIHC	TCGA-FV-A496-01A	PFDN4	chr20	52830997	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000371419	ENST00000329613		TCGA	RV	LIHC	TCGA-FV-A496-01A	PFDN4	chr20	52830997	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000487129	ENST00000371497		TCGA	RV	LIHC	TCGA-FV-A496-01A	PFDN4	chr20	52830997	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000487129	ENST00000603338		TCGA	RV	LIHC	TCGA-FV-A496-01A	PFDN4	chr20	52830997	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000487129	ENST00000329613		TCGA	RV	LIHC	TCGA-FV-A496-01A	PFDN4	chr20	52830997	+	TSHZ2	chr20	52103683	+
5CDS-5UTR	ENST00000309364	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000309364	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000309364	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000309364	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000359180	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000359180	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000359180	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000359180	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000317589	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000317589	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000317589	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000317589	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000355397	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000355397	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000355397	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000355397	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000429027	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000429027	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000429027	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000429027	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5UTR-5UTR	ENST00000539256	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5UTR-5UTR	ENST00000539256	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5UTR-intron	ENST00000539256	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5UTR-intron	ENST00000539256	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000299275	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000299275	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000299275	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000299275	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000538714	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000538714	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000538714	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000538714	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000543806	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000543806	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000543806	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000543806	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000424268	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000424268	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000424268	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000424268	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000540972	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000540972	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000540972	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000540972	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000510738	ENST00000361132		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000510738	ENST00000393371		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000510738	ENST00000522500		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000510738	ENST00000519883		TCGA	RV	LIHC	TCGA-BC-A216-01A	PLEKHA5	chr12	19285384	+	RASGEF1C	chr5	179565058	-
Frame-shit	ENST00000345988	ENST00000397293		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000345988	ENST00000424878		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000345988	ENST00000349314		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000345988	ENST00000361710		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000345988	ENST00000397287		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000345988	ENST00000487423		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
Frame-shit	ENST00000590782	ENST00000397293		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000590782	ENST00000424878		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000590782	ENST00000349314		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000590782	ENST00000361710		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000590782	ENST00000397287		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
5CDS-5UTR	ENST00000590782	ENST00000487423		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	PPL	chr16	4938979	-	APOL3	chr22	36538106	-
intron-3CDS	ENST00000520500	ENST00000276297		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
intron-3CDS	ENST00000520500	ENST00000358919		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
intron-3CDS	ENST00000520500	ENST00000512044		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
intron-intron	ENST00000520500	ENST00000316609		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
intron-intron	ENST00000520500	ENST00000511869		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
intron-intron	ENST00000520500	ENST00000510318		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
intron-5UTR	ENST00000520500	ENST00000520226		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
Frame-shit	ENST00000221138	ENST00000276297		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
Frame-shit	ENST00000221138	ENST00000358919		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
Frame-shit	ENST00000221138	ENST00000512044		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-intron	ENST00000221138	ENST00000316609		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-intron	ENST00000221138	ENST00000511869		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-intron	ENST00000221138	ENST00000510318		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-5UTR	ENST00000221138	ENST00000520226		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
Frame-shit	ENST00000518564	ENST00000276297		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
Frame-shit	ENST00000518564	ENST00000358919		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
Frame-shit	ENST00000518564	ENST00000512044		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-intron	ENST00000518564	ENST00000316609		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-intron	ENST00000518564	ENST00000511869		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-intron	ENST00000518564	ENST00000510318		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5CDS-5UTR	ENST00000518564	ENST00000520226		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP2CB	chr8	30669836	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000357710	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000357710	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000357710	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000324501	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000324501	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000324501	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000344094	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000344094	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000344094	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000261970	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000261970	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000261970	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000394164	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000394164	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000394164	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000557511	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000557511	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000557511	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000406768	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000406768	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
intron-intron	ENST00000406768	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000394157	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000394157	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5UTR-intron	ENST00000394157	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
3UTR-intron	ENST00000553447	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
3UTR-intron	ENST00000553447	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
3UTR-intron	ENST00000553447	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A217-01A	PSEN1	chr14	73603291	+	ACSM1	chr16	20709110	-
5CDS-5UTR	ENST00000295874	ENST00000476844		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-5UTR	ENST00000295874	ENST00000492590		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-intron	ENST00000295874	ENST00000466788		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-5UTR	ENST00000295874	ENST00000468189		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-intron	ENST00000295874	ENST00000341848		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-5UTR	ENST00000474889	ENST00000476844		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-5UTR	ENST00000474889	ENST00000492590		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-intron	ENST00000474889	ENST00000466788		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-5UTR	ENST00000474889	ENST00000468189		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
5CDS-intron	ENST00000474889	ENST00000341848		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
3UTR-5UTR	ENST00000495879	ENST00000476844		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
3UTR-5UTR	ENST00000495879	ENST00000492590		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
3UTR-intron	ENST00000495879	ENST00000466788		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
3UTR-5UTR	ENST00000495879	ENST00000468189		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
3UTR-intron	ENST00000495879	ENST00000341848		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60807705	-
In-frame	ENST00000357037	ENST00000184956		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PTRF	chr17	40574645	-	HEATR6	chr17	58125749	-
In-frame	ENST00000357037	ENST00000585976		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PTRF	chr17	40574645	-	HEATR6	chr17	58125749	-
5CDS-intron	ENST00000357037	ENST00000585712		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PTRF	chr17	40574645	-	HEATR6	chr17	58125749	-
intron-intron	ENST00000338086	ENST00000457313		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000338086	ENST00000392102		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000338086	ENST00000442769		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000338086	ENST00000258398		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000319801	ENST00000457313		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000319801	ENST00000392102		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000319801	ENST00000442769		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000319801	ENST00000258398		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000361078	ENST00000457313		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000361078	ENST00000392102		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000361078	ENST00000442769		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000361078	ENST00000258398		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-intron	ENST00000536417	ENST00000457313		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-5UTR	ENST00000536417	ENST00000392102		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-5UTR	ENST00000536417	ENST00000442769		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-intron	ENST00000536417	ENST00000258398		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-intron	ENST00000403432	ENST00000457313		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-5UTR	ENST00000403432	ENST00000392102		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-5UTR	ENST00000403432	ENST00000442769		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
5UTR-intron	ENST00000403432	ENST00000258398		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000420234	ENST00000457313		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000420234	ENST00000392102		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-5UTR	ENST00000420234	ENST00000442769		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
intron-intron	ENST00000420234	ENST00000258398		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PUM2	chr2	20550358	-	TTLL4	chr2	219591992	+
In-frame	ENST00000395443	ENST00000331456		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
In-frame	ENST00000395443	ENST00000469027		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
5CDS-intron	ENST00000395443	ENST00000473863		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
In-frame	ENST00000357496	ENST00000331456		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
In-frame	ENST00000357496	ENST00000469027		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
5CDS-intron	ENST00000357496	ENST00000473863		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
In-frame	ENST00000424300	ENST00000331456		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
In-frame	ENST00000424300	ENST00000469027		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
5CDS-intron	ENST00000424300	ENST00000473863		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
intron-3CDS	ENST00000479449	ENST00000331456		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
intron-3CDS	ENST00000479449	ENST00000469027		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
intron-intron	ENST00000479449	ENST00000473863		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	QRICH1	chr3	49114142	-	TRAIP	chr3	49869501	-
intron-5UTR	ENST00000356415	ENST00000343534		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000356415	ENST00000369718		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000356415	ENST00000464591		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000436150	ENST00000343534		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000436150	ENST00000369718		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000436150	ENST00000464591		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000369709	ENST00000343534		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000369709	ENST00000369718		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000369709	ENST00000464591		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
5UTR-5UTR	ENST00000545460	ENST00000343534		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
5UTR-5UTR	ENST00000545460	ENST00000369718		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
5UTR-3UTR	ENST00000545460	ENST00000464591		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000494982	ENST00000343534		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000494982	ENST00000369718		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000494982	ENST00000464591		TCGA	RV	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112162969	+	C1orf162	chr1	112018640	+
In-frame	ENST00000357277	ENST00000380122		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000357277	ENST00000398155		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000357277	ENST00000485153		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
In-frame	ENST00000303843	ENST00000380122		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000303843	ENST00000398155		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000303843	ENST00000485153		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
In-frame	ENST00000380064	ENST00000380122		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000380064	ENST00000398155		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000380064	ENST00000485153		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
3UTR-3CDS	ENST00000469714	ENST00000380122		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
3UTR-intron	ENST00000469714	ENST00000398155		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
3UTR-intron	ENST00000469714	ENST00000485153		TCGA	RV	LIHC	TCGA-BC-A10T-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000296043	ENST00000510197		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000339906		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000515604		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000424749		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
5CDS-intron	ENST00000296043	ENST00000515589		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000510197		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000339906		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000515604		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000424749		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
intron-intron	ENST00000473602	ENST00000515589		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SHROOM3	chr4	77476916	+	FAM47E	chr4	77230297	+
intron-3CDS	ENST00000484079	ENST00000532414		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
intron-5UTR	ENST00000484079	ENST00000442784		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
Frame-shit	ENST00000366926	ENST00000532414		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
5CDS-5UTR	ENST00000366926	ENST00000442784		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
5UTR-3CDS	ENST00000536446	ENST00000532414		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
5UTR-5UTR	ENST00000536446	ENST00000442784		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
intron-3CDS	ENST00000536992	ENST00000532414		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
intron-5UTR	ENST00000536992	ENST00000442784		TCGA	RV	LIHC	TCGA-CC-A1HT-01A	SLC30A10	chr1	220100370	-	MEX3A	chr1	156047473	-
5UTR-3CDS	ENST00000278795	ENST00000328041		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SMOX	chr20	4129624	+	SLC24A3	chr20	19634706	+
5UTR-3CDS	ENST00000305958	ENST00000328041		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SMOX	chr20	4129624	+	SLC24A3	chr20	19634706	+
5UTR-3CDS	ENST00000339123	ENST00000328041		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SMOX	chr20	4129624	+	SLC24A3	chr20	19634706	+
3UTR-3CDS	ENST00000484515	ENST00000328041		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SMOX	chr20	4129624	+	SLC24A3	chr20	19634706	+
5UTR-3CDS	ENST00000346595	ENST00000328041		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SMOX	chr20	4129624	+	SLC24A3	chr20	19634706	+
intron-3CDS	ENST00000379460	ENST00000328041		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	SMOX	chr20	4129624	+	SLC24A3	chr20	19634706	+
In-frame	ENST00000566228	ENST00000053243		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
5CDS-intron	ENST00000566228	ENST00000396495		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
In-frame	ENST00000323433	ENST00000053243		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
5CDS-intron	ENST00000323433	ENST00000396495		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
In-frame	ENST00000306030	ENST00000053243		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
5CDS-intron	ENST00000306030	ENST00000396495		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
intron-3CDS	ENST00000568359	ENST00000053243		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
intron-intron	ENST00000568359	ENST00000396495		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SNX29	chr16	12155503	+	TNFRSF17	chr16	12060052	+
5UTR-5UTR	ENST00000393328	ENST00000570565		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393328	ENST00000442502		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393328	ENST00000340813		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393328	ENST00000451037		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393328	ENST00000285273		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-intron	ENST00000393328	ENST00000571918		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393331	ENST00000570565		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393331	ENST00000442502		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393331	ENST00000340813		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393331	ENST00000451037		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000393331	ENST00000285273		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-intron	ENST00000393331	ENST00000571918		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000347630	ENST00000570565		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000347630	ENST00000442502		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000347630	ENST00000340813		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000347630	ENST00000451037		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000347630	ENST00000285273		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-intron	ENST00000347630	ENST00000571918		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000504102	ENST00000570565		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000504102	ENST00000442502		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000504102	ENST00000340813		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000504102	ENST00000451037		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000504102	ENST00000285273		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-intron	ENST00000504102	ENST00000571918		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000503676	ENST00000570565		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000503676	ENST00000442502		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000503676	ENST00000340813		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000503676	ENST00000451037		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
intron-5UTR	ENST00000503676	ENST00000285273		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
intron-intron	ENST00000503676	ENST00000571918		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000513080	ENST00000570565		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000513080	ENST00000442502		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000513080	ENST00000340813		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000513080	ENST00000451037		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-5UTR	ENST00000513080	ENST00000285273		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
5UTR-intron	ENST00000513080	ENST00000571918		TCGA	RV	LIHC	TCGA-ED-A97K-01A	SPOP	chr17	47755295	-	CA10	chr17	50008492	-
In-frame	ENST00000309328	ENST00000317568		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000309328	ENST00000531296		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000309328	ENST00000355991		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000309328	ENST00000416776		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
In-frame	ENST00000531405	ENST00000317568		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000531405	ENST00000531296		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000531405	ENST00000355991		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000531405	ENST00000416776		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
In-frame	ENST00000527920	ENST00000317568		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527920	ENST00000531296		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527920	ENST00000355991		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527920	ENST00000416776		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000526877	ENST00000317568		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000526877	ENST00000531296		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000526877	ENST00000355991		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000526877	ENST00000416776		TCGA	RV	LIHC	TCGA-EP-A12J-01A	SSSCA1	chr11	65338441	+	FRMD8	chr11	65178713	+
3UTR-5UTR	ENST00000381482	ENST00000401815		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
3UTR-5UTR	ENST00000381482	ENST00000323007		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
3UTR-5UTR	ENST00000246032	ENST00000401815		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
3UTR-5UTR	ENST00000246032	ENST00000323007		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
intron-5UTR	ENST00000400064	ENST00000401815		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
intron-5UTR	ENST00000400064	ENST00000323007		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
Frame-shit	ENST00000236273	ENST00000328664		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
Frame-shit	ENST00000236273	ENST00000454452		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000236273	ENST00000423253		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000236273	ENST00000423810		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000236273	ENST00000568195		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000236273	ENST00000417538		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000236273	ENST00000342055		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000236273	ENST00000357542		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
Frame-shit	ENST00000354361	ENST00000328664		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
Frame-shit	ENST00000354361	ENST00000454452		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000354361	ENST00000423253		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000354361	ENST00000423810		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000354361	ENST00000568195		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000354361	ENST00000417538		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000354361	ENST00000342055		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-3UTR	ENST00000354361	ENST00000357542		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3CDS	ENST00000476231	ENST00000328664		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3CDS	ENST00000476231	ENST00000454452		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000476231	ENST00000423253		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000476231	ENST00000423810		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000476231	ENST00000568195		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000476231	ENST00000417538		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000476231	ENST00000342055		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
intron-3UTR	ENST00000476231	ENST00000357542		TCGA	RV	LIHC	TCGA-FV-A3R3-01A	SYF2	chr1	25558595	-	RHD	chr1	25611064	+
5CDS-5UTR	ENST00000337137	ENST00000406902		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000337137	ENST00000361034		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000337137	ENST00000490378		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000337137	ENST00000408031		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000380995	ENST00000406902		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000380995	ENST00000361034		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000380995	ENST00000490378		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000380995	ENST00000408031		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000407381	ENST00000406902		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000407381	ENST00000361034		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000407381	ENST00000490378		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000407381	ENST00000408031		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000355704	ENST00000406902		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000355704	ENST00000361034		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000355704	ENST00000490378		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000355704	ENST00000408031		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
intron-5UTR	ENST00000472791	ENST00000406902		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000472791	ENST00000361034		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000472791	ENST00000490378		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
intron-intron	ENST00000472791	ENST00000408031		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000406733	ENST00000406902		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000406733	ENST00000361034		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000406733	ENST00000490378		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000406733	ENST00000408031		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	TBC1D22A	chr22	47308084	+	GRAMD4	chr22	47022648	+
5UTR-5UTR	ENST00000361905	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000361905	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000361905	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-intron	ENST00000361905	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000527636	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000527636	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-5UTR	ENST00000527636	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
5UTR-intron	ENST00000527636	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000527575	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000527575	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000527575	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000527575	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000334310	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000334310	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000334310	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000334310	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000361985	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000361985	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000361985	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000361985	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000526600	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000526600	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-5UTR	ENST00000526600	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
intron-intron	ENST00000526600	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TEAD1	chr11	12696381	+	ZCCHC8	chr12	122967242	-
In-frame	ENST00000359520	ENST00000335263		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
Frame-shit	ENST00000359520	ENST00000424963		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000359520	ENST00000322340		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-5UTR	ENST00000359520	ENST00000499851		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-5UTR	ENST00000359520	ENST00000342702		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-5UTR	ENST00000359520	ENST00000556807		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000359520	ENST00000558567		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-3UTR	ENST00000359520	ENST00000299135		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-3UTR	ENST00000359520	ENST00000454394		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-3UTR	ENST00000359520	ENST00000556511		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000359520	ENST00000557186		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000359520	ENST00000545563		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-3CDS	ENST00000561228	ENST00000335263		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-3CDS	ENST00000561228	ENST00000424963		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-intron	ENST00000561228	ENST00000322340		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-5UTR	ENST00000561228	ENST00000499851		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-5UTR	ENST00000561228	ENST00000342702		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-5UTR	ENST00000561228	ENST00000556807		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-intron	ENST00000561228	ENST00000558567		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-3UTR	ENST00000561228	ENST00000299135		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-3UTR	ENST00000561228	ENST00000454394		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-3UTR	ENST00000561228	ENST00000556511		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-intron	ENST00000561228	ENST00000557186		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
intron-intron	ENST00000561228	ENST00000545563		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
Frame-shit	ENST00000558678	ENST00000335263		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
Frame-shit	ENST00000558678	ENST00000424963		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000558678	ENST00000322340		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-5UTR	ENST00000558678	ENST00000499851		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-5UTR	ENST00000558678	ENST00000342702		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-5UTR	ENST00000558678	ENST00000556807		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000558678	ENST00000558567		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-3UTR	ENST00000558678	ENST00000299135		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-3UTR	ENST00000558678	ENST00000454394		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-3UTR	ENST00000558678	ENST00000556511		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000558678	ENST00000557186		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
5CDS-intron	ENST00000558678	ENST00000545563		TCGA	RV	LIHC	TCGA-FV-A496-01A	TECPR2	chr14	102931626	+	WDR20	chr14	102675199	+
3UTR-3CDS	ENST00000402696	ENST00000280326		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000402696	ENST00000503026		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000402696	ENST00000515390		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000402696	ENST00000515676		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000402696	ENST00000506600		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
In-frame	ENST00000264998	ENST00000280326		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000264998	ENST00000503026		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000264998	ENST00000515390		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000264998	ENST00000515676		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000264998	ENST00000506600		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000475382	ENST00000280326		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
intron-intron	ENST00000475382	ENST00000503026		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
intron-intron	ENST00000475382	ENST00000515390		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
intron-intron	ENST00000475382	ENST00000515676		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
intron-intron	ENST00000475382	ENST00000506600		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	TF	chr3	133497635	+	CCT5	chr5	10250033	+
In-frame	ENST00000343028	ENST00000311812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TM7SF3	chr12	27167011	-	SNX31	chr8	101612669	-
In-frame	ENST00000343028	ENST00000428383		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TM7SF3	chr12	27167011	-	SNX31	chr8	101612669	-
5CDS-intron	ENST00000343028	ENST00000519521		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TM7SF3	chr12	27167011	-	SNX31	chr8	101612669	-
5UTR-3CDS	ENST00000542667	ENST00000311812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TM7SF3	chr12	27167011	-	SNX31	chr8	101612669	-
5UTR-3CDS	ENST00000542667	ENST00000428383		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TM7SF3	chr12	27167011	-	SNX31	chr8	101612669	-
5UTR-intron	ENST00000542667	ENST00000519521		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TM7SF3	chr12	27167011	-	SNX31	chr8	101612669	-
Frame-shit	ENST00000371142	ENST00000370626		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TM9SF3	chr10	98319416	-	AVPI1	chr10	99437782	-
intron-3CDS	ENST00000490192	ENST00000370626		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TM9SF3	chr10	98319416	-	AVPI1	chr10	99437782	-
5UTR-3CDS	ENST00000527073	ENST00000336232		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5UTR-3CDS	ENST00000527073	ENST00000545207		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5UTR-3CDS	ENST00000527073	ENST00000535878		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5UTR-3CDS	ENST00000527073	ENST00000311438		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5UTR-3CDS	ENST00000527073	ENST00000430500		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5UTR-intron	ENST00000527073	ENST00000542795		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000525631	ENST00000336232		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000525631	ENST00000545207		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000525631	ENST00000535878		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000525631	ENST00000311438		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000525631	ENST00000430500		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5CDS-intron	ENST00000525631	ENST00000542795		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000307366	ENST00000336232		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000307366	ENST00000545207		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000307366	ENST00000535878		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000307366	ENST00000311438		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
Frame-shit	ENST00000307366	ENST00000430500		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
5CDS-intron	ENST00000307366	ENST00000542795		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	TMEM223	chr11	62559151	-	SLC22A8	chr11	62761350	-
intron-3CDS	ENST00000468874	ENST00000381815		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
intron-3CDS	ENST00000468874	ENST00000381831		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
intron-3CDS	ENST00000468874	ENST00000381839		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
intron-3CDS	ENST00000468874	ENST00000543717		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
intron-intron	ENST00000468874	ENST00000361093		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
intron-intron	ENST00000468874	ENST00000497313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
5UTR-3CDS	ENST00000542230	ENST00000381815		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
5UTR-3CDS	ENST00000542230	ENST00000381831		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
5UTR-3CDS	ENST00000542230	ENST00000381839		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
5UTR-3CDS	ENST00000542230	ENST00000543717		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
5UTR-intron	ENST00000542230	ENST00000361093		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
5UTR-intron	ENST00000542230	ENST00000497313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TMEM50B	chr21	34852145	-	GART	chr21	34883765	-
Frame-shit	ENST00000259746	ENST00000372389		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
Frame-shit	ENST00000259746	ENST00000372344		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
Frame-shit	ENST00000259746	ENST00000304004		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
Frame-shit	ENST00000323267	ENST00000372389		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
Frame-shit	ENST00000323267	ENST00000372344		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
Frame-shit	ENST00000323267	ENST00000304004		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
intron-3CDS	ENST00000527188	ENST00000372389		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
intron-3CDS	ENST00000527188	ENST00000372344		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
intron-3CDS	ENST00000527188	ENST00000304004		TCGA	RV	LIHC	TCGA-MI-A75I-01A	TMEM63B	chr6	44108835	+	POLR1C	chr6	43488013	+
Frame-shit	ENST00000311160	ENST00000258774		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
5CDS-5UTR	ENST00000311160	ENST00000432325		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000355730	ENST00000258774		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000355730	ENST00000432325		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
Frame-shit	ENST00000398879	ENST00000258774		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
5CDS-5UTR	ENST00000398879	ENST00000432325		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000442536	ENST00000258774		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000442536	ENST00000432325		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000458317	ENST00000258774		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000458317	ENST00000432325		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000474346	ENST00000258774		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000474346	ENST00000432325		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	TNS3	chr7	47436397	-	HUS1	chr7	48018413	-
In-frame	ENST00000343526	ENST00000288602		TCGA	RV	LIHC	TCGA-DD-AACL-01A	TRIM24	chr7	138239609	+	BRAF	chr7	140550012	-
In-frame	ENST00000415680	ENST00000288602		TCGA	RV	LIHC	TCGA-DD-AACL-01A	TRIM24	chr7	138239609	+	BRAF	chr7	140550012	-
3UTR-3CDS	ENST00000497516	ENST00000288602		TCGA	RV	LIHC	TCGA-DD-AACL-01A	TRIM24	chr7	138239609	+	BRAF	chr7	140550012	-
Frame-shit	ENST00000393066	ENST00000416426		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393066	ENST00000284073		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393066	ENST00000322684		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393066	ENST00000442934		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393066	ENST00000579180		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000393066	ENST00000579505		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000262294	ENST00000416426		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000262294	ENST00000284073		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000262294	ENST00000322684		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000262294	ENST00000442934		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000262294	ENST00000579180		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000262294	ENST00000579505		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
In-frame	ENST00000376149	ENST00000416426		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
In-frame	ENST00000376149	ENST00000284073		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
In-frame	ENST00000376149	ENST00000322684		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
In-frame	ENST00000376149	ENST00000442934		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
In-frame	ENST00000376149	ENST00000579180		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000376149	ENST00000579505		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393065	ENST00000416426		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393065	ENST00000284073		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393065	ENST00000322684		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393065	ENST00000442934		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
Frame-shit	ENST00000393065	ENST00000579180		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
5CDS-intron	ENST00000393065	ENST00000579505		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
intron-3CDS	ENST00000584889	ENST00000416426		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
intron-3CDS	ENST00000584889	ENST00000284073		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
intron-3CDS	ENST00000584889	ENST00000322684		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
intron-3CDS	ENST00000584889	ENST00000442934		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
intron-3CDS	ENST00000584889	ENST00000579180		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
intron-intron	ENST00000584889	ENST00000579505		TCGA	RV	LIHC	TCGA-CC-5258-01A	TRIM37	chr17	57148184	-	MSI2	chr17	55478740	+
5CDS-5UTR	ENST00000353024	ENST00000271636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TUFT1	chr1	151512902	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000392712	ENST00000271636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TUFT1	chr1	151512902	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000368849	ENST00000271636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TUFT1	chr1	151512902	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000368848	ENST00000271636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TUFT1	chr1	151512902	+	CGN	chr1	151490982	+
5UTR-5UTR	ENST00000538902	ENST00000271636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TUFT1	chr1	151512902	+	CGN	chr1	151490982	+
5CDS-intron	ENST00000276893	ENST00000371799		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000277415		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000252854		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000371801		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000371796		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000392991		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000371793		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371799		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000277415		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000252854		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371801		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371796		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000392991		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371793		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371799		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000277415		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000252854		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371801		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371796		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000392991		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371793		TCGA	RV	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6413643	+	OLFM1	chr9	137987710	+
Frame-shit	ENST00000389221	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
Frame-shit	ENST00000508903	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
Frame-shit	ENST00000397462	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000391893	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000403703	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000248104	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000397464	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000402641	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
Frame-shit	ENST00000301712	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
5UTR-3CDS	ENST00000503648	ENST00000301180		TCGA	RV	LIHC	TCGA-ED-A82E-01A	UNKL	chr16	1463847	-	DIP2B	chr12	51019759	+
Frame-shit	ENST00000406606	ENST00000303407		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-5UTR	ENST00000406606	ENST00000473349		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-intron	ENST00000406606	ENST00000371834		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-intron	ENST00000406606	ENST00000357885		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
Frame-shit	ENST00000371850	ENST00000303407		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-5UTR	ENST00000371850	ENST00000473349		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-intron	ENST00000371850	ENST00000371834		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-intron	ENST00000371850	ENST00000357885		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
Frame-shit	ENST00000371851	ENST00000303407		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-5UTR	ENST00000371851	ENST00000473349		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-intron	ENST00000371851	ENST00000371834		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
5CDS-intron	ENST00000371851	ENST00000357885		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
intron-3CDS	ENST00000486113	ENST00000303407		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
intron-5UTR	ENST00000486113	ENST00000473349		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
intron-intron	ENST00000486113	ENST00000371834		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
intron-intron	ENST00000486113	ENST00000357885		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	VAV2	chr9	136671203	-	BRD3	chr9	136898827	-
In-frame	ENST00000427277	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000427277	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
In-frame	ENST00000297954	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000297954	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
3UTR-3CDS	ENST00000395475	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
3UTR-intron	ENST00000395475	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
In-frame	ENST00000356055	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000356055	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
In-frame	ENST00000349097	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000349097	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
In-frame	ENST00000395477	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
5CDS-intron	ENST00000395477	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
intron-3CDS	ENST00000471076	ENST00000375464		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
intron-intron	ENST00000471076	ENST00000488630		TCGA	RV	LIHC	TCGA-BC-A10R-01A	WNK2	chr9	96052329	+	C9orf89	chr9	95869956	+
5CDS-3UTR	ENST00000247843	ENST00000435070		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000247843	ENST00000456847		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000247843	ENST00000266679		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000247843	ENST00000550987		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000247843	ENST00000551516		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000548020	ENST00000435070		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000548020	ENST00000456847		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000548020	ENST00000266679		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000548020	ENST00000550987		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000548020	ENST00000551516		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
In-frame	ENST00000371399	ENST00000294383		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
In-frame	ENST00000371399	ENST00000407756		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
5CDS-intron	ENST00000371399	ENST00000484447		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
Frame-shit	ENST00000072644	ENST00000294383		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
Frame-shit	ENST00000072644	ENST00000407756		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
5CDS-intron	ENST00000072644	ENST00000484447		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
In-frame	ENST00000539954	ENST00000294383		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
In-frame	ENST00000539954	ENST00000407756		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
5CDS-intron	ENST00000539954	ENST00000484447		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
Frame-shit	ENST00000469457	ENST00000294383		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
Frame-shit	ENST00000469457	ENST00000407756		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
5CDS-intron	ENST00000469457	ENST00000484447		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	YIPF1	chr1	54331873	-	USP24	chr1	55563390	-
intron-5UTR	ENST00000372422	ENST00000278407		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000372422	ENST00000340687		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000372422	ENST00000378323		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000372422	ENST00000378324		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-intron	ENST00000372422	ENST00000403558		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-intron	ENST00000372422	ENST00000531605		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000506469	ENST00000278407		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000506469	ENST00000340687		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000506469	ENST00000378323		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000506469	ENST00000378324		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-intron	ENST00000506469	ENST00000403558		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-intron	ENST00000506469	ENST00000531605		TCGA	RV	LIHC	TCGA-ED-A82E-01A	YIPF3	chr6	43480880	-	SERPING1	chr11	57365161	+
intron-5UTR	ENST00000462705	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000462705	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000462705	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000462705	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000462705	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000393785	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000393785	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000393785	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000393785	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000481632	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000481632	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000481632	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000481632	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000471418	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000471418	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000471418	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000471418	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-intron	ENST00000357258	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-intron	ENST00000357258	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000357258	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-intron	ENST00000357258	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000464560	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000464560	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000464560	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000464560	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-intron	ENST00000488663	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-intron	ENST00000488663	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-5UTR	ENST00000488663	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
5UTR-intron	ENST00000488663	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000381196		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000360074		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000537002		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000397617		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000358503		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000397611		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000355233		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000356435		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000540109		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000474710	ENST00000486161		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000474710	ENST00000397606		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-5UTR	ENST00000474710	ENST00000463477		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
intron-intron	ENST00000474710	ENST00000471274		TCGA	RV	LIHC	TCGA-2Y-A9H6-01A	ZBTB20	chr3	114519948	-	PTPRD	chr9	8733946	-
In-frame	ENST00000352645	ENST00000216237		TCGA	RV	LIHC	TCGA-2Y-A9H3-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41620024	+
5CDS-intron	ENST00000352645	ENST00000489136		TCGA	RV	LIHC	TCGA-2Y-A9H3-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41620024	+
In-frame	ENST00000351589	ENST00000216237		TCGA	RV	LIHC	TCGA-2Y-A9H3-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41620024	+
5CDS-intron	ENST00000351589	ENST00000489136		TCGA	RV	LIHC	TCGA-2Y-A9H3-01A	ZC3H7B	chr22	41723368	+	L3MBTL2	chr22	41620024	+
5CDS-5UTR	ENST00000257963	ENST00000548567		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000257963	ENST00000351328		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000257963	ENST00000542324		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000541224	ENST00000548567		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000541224	ENST00000351328		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000541224	ENST00000542324		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000426655	ENST00000548567		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000426655	ENST00000351328		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000426655	ENST00000542324		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000415850	ENST00000548567		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000415850	ENST00000351328		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000415850	ENST00000542324		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000542485	ENST00000548567		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000542485	ENST00000351328		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000542485	ENST00000542324		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
intron-5UTR	ENST00000563121	ENST00000548567		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
intron-5UTR	ENST00000563121	ENST00000351328		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
intron-5UTR	ENST00000563121	ENST00000542324		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ACVR1B	chr12	52380726	+	CS	chr12	56680429	-
Frame-shit	ENST00000300176	ENST00000303904		TCGA	RV	LIHC	TCGA-BC-A10R-01A	AGFG2	chr7	100151881	+	COPS6	chr7	99689272	+
In-frame	ENST00000300176	ENST00000418625		TCGA	RV	LIHC	TCGA-BC-A10R-01A	AGFG2	chr7	100151881	+	COPS6	chr7	99689272	+
intron-3CDS	ENST00000262935	ENST00000303904		TCGA	RV	LIHC	TCGA-BC-A10R-01A	AGFG2	chr7	100151881	+	COPS6	chr7	99689272	+
intron-3CDS	ENST00000262935	ENST00000418625		TCGA	RV	LIHC	TCGA-BC-A10R-01A	AGFG2	chr7	100151881	+	COPS6	chr7	99689272	+
3UTR-3CDS	ENST00000474713	ENST00000303904		TCGA	RV	LIHC	TCGA-BC-A10R-01A	AGFG2	chr7	100151881	+	COPS6	chr7	99689272	+
3UTR-3CDS	ENST00000474713	ENST00000418625		TCGA	RV	LIHC	TCGA-BC-A10R-01A	AGFG2	chr7	100151881	+	COPS6	chr7	99689272	+
5CDS-5UTR	ENST00000264167	ENST00000466398		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
5CDS-5UTR	ENST00000264167	ENST00000410066		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
5CDS-5UTR	ENST00000264167	ENST00000336917		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
5CDS-5UTR	ENST00000264167	ENST00000409343		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
5CDS-5UTR	ENST00000264167	ENST00000409692		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000409888	ENST00000466398		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000409888	ENST00000410066		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000409888	ENST00000336917		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000409888	ENST00000409343		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
intron-5UTR	ENST00000409888	ENST00000409692		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	AGPS	chr2	178370303	+	ZNF385B	chr2	180409696	-
3UTR-3CDS	ENST00000295897	ENST00000371756		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
3UTR-intron	ENST00000295897	ENST00000465873		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
Frame-shit	ENST00000415165	ENST00000371756		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
5CDS-intron	ENST00000415165	ENST00000465873		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-3CDS	ENST00000503124	ENST00000371756		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-intron	ENST00000503124	ENST00000465873		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-3CDS	ENST00000509063	ENST00000371756		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-intron	ENST00000509063	ENST00000465873		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-3CDS	ENST00000401494	ENST00000371756		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-intron	ENST00000401494	ENST00000465873		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-3CDS	ENST00000505649	ENST00000371756		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-intron	ENST00000505649	ENST00000465873		TCGA	RV	LIHC	TCGA-G3-A25X-01A	ALB	chr4	74286971	+	UBAC1	chr9	138839751	-
intron-intron	ENST00000588750	ENST00000447411		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
intron-intron	ENST00000588750	ENST00000266579		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000588802	ENST00000447411		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000588802	ENST00000266579		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000252491	ENST00000447411		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000252491	ENST00000266579		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000592885	ENST00000447411		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000592885	ENST00000266579		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000589781	ENST00000447411		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000589781	ENST00000266579		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000586638	ENST00000447411		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
5CDS-intron	ENST00000586638	ENST00000266579		TCGA	RV	LIHC	TCGA-2Y-A9HB-01A	APOC1	chr19	45422606	+	SLC38A4	chr12	47226191	-
Frame-shit	ENST00000357668	ENST00000355849		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
Frame-shit	ENST00000357668	ENST00000520981		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000357668	ENST00000522578		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000518721	ENST00000355849		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000518721	ENST00000520981		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000518721	ENST00000522578		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000520625	ENST00000355849		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000520625	ENST00000520981		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
intron-intron	ENST00000520625	ENST00000522578		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	ASAP1	chr8	131370263	-	KHDRBS3	chr8	136533480	+
Frame-shit	ENST00000306279	ENST00000409238		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
Frame-shit	ENST00000306279	ENST00000333017		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
In-frame	ENST00000306279	ENST00000423800		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
Frame-shit	ENST00000306279	ENST00000409679		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
3UTR-3CDS	ENST00000463422	ENST00000409238		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
3UTR-3CDS	ENST00000463422	ENST00000333017		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
3UTR-3CDS	ENST00000463422	ENST00000423800		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
3UTR-3CDS	ENST00000463422	ENST00000409679		TCGA	RV	LIHC	TCGA-BC-A216-01A	ATOH8	chr2	85991305	+	LYG2	chr2	99863283	-
Frame-shit	ENST00000371711	ENST00000568546		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	B4GALT5	chr20	48330113	-	TBL3	chr16	2024057	+
intron-3CDS	ENST00000162330	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000162330	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000546196	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000546196	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000566982	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000566982	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000393422	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000393422	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
5UTR-3CDS	ENST00000535626	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
5UTR-intron	ENST00000535626	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000538440	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000538440	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
5UTR-3CDS	ENST00000418647	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
5UTR-intron	ENST00000418647	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000542031	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000542031	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000420641	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000420641	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000393420	ENST00000283882		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000393420	ENST00000564286		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	BCAR1	chr16	75299723	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000260502	ENST00000370225		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000260502	ENST00000535881		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000260502	ENST00000536513		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000260502	ENST00000465352		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000260502	ENST00000535735		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-3CDS	ENST00000370244	ENST00000370225		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370244	ENST00000535881		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370244	ENST00000536513		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370244	ENST00000465352		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370244	ENST00000535735		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-3CDS	ENST00000370243	ENST00000370225		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370243	ENST00000535881		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370243	ENST00000536513		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370243	ENST00000465352		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000370243	ENST00000535735		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
In-frame	ENST00000370247	ENST00000370225		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
5CDS-intron	ENST00000370247	ENST00000535881		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
5CDS-intron	ENST00000370247	ENST00000536513		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
5CDS-intron	ENST00000370247	ENST00000465352		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
5CDS-intron	ENST00000370247	ENST00000535735		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-3CDS	ENST00000539242	ENST00000370225		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000539242	ENST00000535881		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000539242	ENST00000536513		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000539242	ENST00000465352		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000539242	ENST00000535735		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-3CDS	ENST00000466632	ENST00000370225		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000466632	ENST00000535881		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000466632	ENST00000536513		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000466632	ENST00000465352		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
intron-intron	ENST00000466632	ENST00000535735		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	BCAR3	chr1	94079404	-	ABCA4	chr1	94505683	-
5CDS-intron	ENST00000367435	ENST00000400968		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000432079		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000460715		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000416058		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000367446		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000367445		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000367444		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-3UTR	ENST00000367435	ENST00000367443		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000367435	ENST00000367441		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000400968		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000432079		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000460715		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000416058		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000367446		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000367445		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000367444		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-3UTR	ENST00000477868	ENST00000367443		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
intron-intron	ENST00000477868	ENST00000367441		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CDC73	chr1	193121574	+	TROVE2	chr1	193060781	+
5CDS-intron	ENST00000556679	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000556679	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
5CDS-intron	ENST00000456570	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000477310	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
3UTR-intron	ENST00000425368	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000497841	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000417261	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000427888	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000459734	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000455591	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000433503	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000474621	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000424727	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000436692	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000473139	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000399981	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419920	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000465211	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000375455	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000489605	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000426239	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000419411	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000440909		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000448921		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000437397		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000355814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393087		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000393088		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000404814		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000449399		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000402629		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-intron	ENST00000460958	ENST00000555289		TCGA	RV	LIHC	TCGA-DD-A73G-01A	CFB	chr6	31919830	+	SERPINA1	chr14	94857030	-
intron-3CDS	ENST00000316403	ENST00000397293		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000316403	ENST00000424878		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000316403	ENST00000349314		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000316403	ENST00000361710		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000316403	ENST00000397287		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000316403	ENST00000487423		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-3CDS	ENST00000546343	ENST00000397293		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000546343	ENST00000424878		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000546343	ENST00000349314		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000546343	ENST00000361710		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000546343	ENST00000397287		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000546343	ENST00000487423		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-3CDS	ENST00000560366	ENST00000397293		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000560366	ENST00000424878		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000560366	ENST00000349314		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000560366	ENST00000361710		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000560366	ENST00000397287		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000560366	ENST00000487423		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-3CDS	ENST00000405140	ENST00000397293		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000405140	ENST00000424878		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000405140	ENST00000349314		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000405140	ENST00000361710		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000405140	ENST00000397287		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
intron-5UTR	ENST00000405140	ENST00000487423		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
Frame-shit	ENST00000523500	ENST00000397293		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
5CDS-5UTR	ENST00000523500	ENST00000424878		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
5CDS-5UTR	ENST00000523500	ENST00000349314		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
5CDS-5UTR	ENST00000523500	ENST00000361710		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
5CDS-5UTR	ENST00000523500	ENST00000397287		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
5CDS-5UTR	ENST00000523500	ENST00000487423		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	CLU	chr8	27455513	-	APOL3	chr22	36541647	-
Frame-shit	ENST00000458535	ENST00000282541		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CMTM8	chr3	32280611	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000307526	ENST00000282541		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CMTM8	chr3	32280611	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000416691	ENST00000377067		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	COG6	chr13	40301685	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000416691	ENST00000483422		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	COG6	chr13	40301685	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000455146	ENST00000377067		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	COG6	chr13	40301685	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000455146	ENST00000483422		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	COG6	chr13	40301685	+	GPC5	chr13	93518535	+
intron-3CDS	ENST00000465775	ENST00000377067		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	COG6	chr13	40301685	+	GPC5	chr13	93518535	+
intron-intron	ENST00000465775	ENST00000483422		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	COG6	chr13	40301685	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000371322	ENST00000261891		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000371322	ENST00000457488		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000371322	ENST00000558069		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000371322	ENST00000558482		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000336592	ENST00000261891		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000336592	ENST00000457488		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
Frame-shit	ENST00000336592	ENST00000558069		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000336592	ENST00000558482		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
In-frame	ENST00000404115	ENST00000261891		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
In-frame	ENST00000404115	ENST00000457488		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
In-frame	ENST00000404115	ENST00000558069		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000404115	ENST00000558482		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
intron-3CDS	ENST00000486604	ENST00000261891		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
intron-3CDS	ENST00000486604	ENST00000457488		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
intron-3CDS	ENST00000486604	ENST00000558069		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
intron-5UTR	ENST00000486604	ENST00000558482		TCGA	RV	LIHC	TCGA-DD-A11C-01A	CUL4B	chrX	119691779	-	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000282251	ENST00000531293		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	CWF19L2	chr11	107286935	-	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000282251	ENST00000305991		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	CWF19L2	chr11	107286935	-	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000282251	ENST00000525934		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	CWF19L2	chr11	107286935	-	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000433523	ENST00000531293		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	CWF19L2	chr11	107286935	-	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000433523	ENST00000305991		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	CWF19L2	chr11	107286935	-	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000433523	ENST00000525934		TCGA	RV	LIHC	TCGA-G3-A3CG-01A	CWF19L2	chr11	107286935	-	SLN	chr11	107578731	-
Frame-shit	ENST00000585892	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000585892	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000585892	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000585892	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000314646	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000314646	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000314646	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000314646	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000359692	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000359692	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000359692	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000359692	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000389253	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000389253	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000389253	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000389253	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000355667	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000355667	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000355667	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000355667	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000408974	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000408974	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000408974	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000408974	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000591819	ENST00000407327		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000591819	ENST00000335757		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000591819	ENST00000586078		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
intron-intron	ENST00000591819	ENST00000588214		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	DNM2	chr19	10930765	+	SLC44A2	chr19	10736929	+
5CDS-5UTR	ENST00000280333	ENST00000355264		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	DOCK1	chr10	128926028	+	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000280333	ENST00000372745		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	DOCK1	chr10	128926028	+	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000280333	ENST00000487653		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	DOCK1	chr10	128926028	+	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000484400	ENST00000355264		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	DOCK1	chr10	128926028	+	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000484400	ENST00000372745		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	DOCK1	chr10	128926028	+	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000484400	ENST00000487653		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	DOCK1	chr10	128926028	+	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000447467	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000447467	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000447467	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000447467	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000447467	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000447467	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000324972	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000324972	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000324972	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000324972	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000324972	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000324972	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000537881	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000537881	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000537881	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000537881	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000537881	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000537881	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000437599	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000437599	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000437599	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000437599	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000437599	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000437599	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000359388	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000359388	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000359388	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000359388	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000359388	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000359388	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000413338	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000413338	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000413338	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000413338	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000413338	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-intron	ENST00000413338	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000457059	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000457059	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000457059	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000457059	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-5UTR	ENST00000457059	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
5CDS-intron	ENST00000457059	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000497626	ENST00000295897		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000497626	ENST00000415165		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000497626	ENST00000503124		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000497626	ENST00000509063		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-5UTR	ENST00000497626	ENST00000401494		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
intron-intron	ENST00000497626	ENST00000505649		TCGA	RV	LIHC	TCGA-XR-A8TE-01A	DYNC1I1	chr7	95657633	+	ALB	chr4	74270034	+
Frame-shit	ENST00000521861	ENST00000297338		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-intron	ENST00000521861	ENST00000523986		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-intron	ENST00000521861	ENST00000517749		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-intron	ENST00000521861	ENST00000518055		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-5UTR	ENST00000521861	ENST00000523547		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
Frame-shit	ENST00000276682	ENST00000297338		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-intron	ENST00000276682	ENST00000523986		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-intron	ENST00000276682	ENST00000517749		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-intron	ENST00000276682	ENST00000518055		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-5UTR	ENST00000276682	ENST00000523547		TCGA	RV	LIHC	TCGA-CC-A8HV-01A	EIF3H	chr8	117738255	-	RAD21	chr8	117870697	-
5CDS-5UTR	ENST00000367796	ENST00000367771		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367796	ENST00000367772		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367796	ENST00000367770		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367796	ENST00000470238		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000367771		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000367772		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000367770		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000470238		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000367771		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000367772		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000367770		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000470238		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169505744	-	SCYL3	chr1	169858031	-
Frame-shit	ENST00000449352	ENST00000374820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000449352	ENST00000452740		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000449352	ENST00000480175		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
intron-3CDS	ENST00000529360	ENST00000374820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
intron-3CDS	ENST00000529360	ENST00000452740		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
intron-5UTR	ENST00000529360	ENST00000480175		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000265978	ENST00000374820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000265978	ENST00000452740		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000265978	ENST00000480175		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000524416	ENST00000374820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000524416	ENST00000452740		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000524416	ENST00000480175		TCGA	RV	LIHC	TCGA-DD-A73C-01A	FAM160A2	chr11	6245609	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000359660	ENST00000356972		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	FBXL17	chr5	107684100	-	SPINK14	chr5	147553797	+
5CDS-intron	ENST00000359660	ENST00000562793		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	FBXL17	chr5	107684100	-	SPINK14	chr5	147553797	+
In-frame	ENST00000542267	ENST00000356972		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	FBXL17	chr5	107684100	-	SPINK14	chr5	147553797	+
5CDS-intron	ENST00000542267	ENST00000562793		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	FBXL17	chr5	107684100	-	SPINK14	chr5	147553797	+
In-frame	ENST00000496714	ENST00000356972		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	FBXL17	chr5	107684100	-	SPINK14	chr5	147553797	+
5CDS-intron	ENST00000496714	ENST00000562793		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	FBXL17	chr5	107684100	-	SPINK14	chr5	147553797	+
In-frame	ENST00000317568	ENST00000528416		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000317568	ENST00000415073		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000317568	ENST00000252268		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000317568	ENST00000532264		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000531296	ENST00000528416		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000531296	ENST00000415073		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000531296	ENST00000252268		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
intron-intron	ENST00000531296	ENST00000532264		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
In-frame	ENST00000355991	ENST00000528416		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000355991	ENST00000415073		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000355991	ENST00000252268		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000355991	ENST00000532264		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
In-frame	ENST00000416776	ENST00000528416		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000416776	ENST00000415073		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000416776	ENST00000252268		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000416776	ENST00000532264		TCGA	RV	LIHC	TCGA-DD-A11C-01A	FRMD8	chr11	65172539	+	DPF2	chr11	65119154	+
3UTR-3CDS	ENST00000229239	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000229239	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000229239	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000229239	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000229239	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000229239	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396856	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396856	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396856	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396861	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396861	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396861	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-3CDS	ENST00000396859	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396859	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
3UTR-intron	ENST00000396859	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
Frame-shit	ENST00000396858	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
5CDS-intron	ENST00000396858	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
5CDS-intron	ENST00000396858	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	GAPDH	chr12	6647481	+	APOA2	chr1	161193418	-
In-frame	ENST00000300648	ENST00000308366		TCGA	RV	LIHC	TCGA-DD-A73G-01A	GCN1L1	chr12	120628101	-	PLA2G1B	chr12	120763823	-
In-frame	ENST00000300648	ENST00000423423		TCGA	RV	LIHC	TCGA-DD-A73G-01A	GCN1L1	chr12	120628101	-	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000300648	ENST00000549767		TCGA	RV	LIHC	TCGA-DD-A73G-01A	GCN1L1	chr12	120628101	-	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000375344	ENST00000375360		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	HIATL1	chr9	97209218	+	PTPDC1	chr9	96857599	+
Frame-shit	ENST00000375344	ENST00000288976		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	HIATL1	chr9	97209218	+	PTPDC1	chr9	96857599	+
5CDS-intron	ENST00000375344	ENST00000467049		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	HIATL1	chr9	97209218	+	PTPDC1	chr9	96857599	+
Frame-shit	ENST00000428393	ENST00000375360		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	HIATL1	chr9	97209218	+	PTPDC1	chr9	96857599	+
Frame-shit	ENST00000428393	ENST00000288976		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	HIATL1	chr9	97209218	+	PTPDC1	chr9	96857599	+
5CDS-intron	ENST00000428393	ENST00000467049		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	HIATL1	chr9	97209218	+	PTPDC1	chr9	96857599	+
5UTR-5UTR	ENST00000336216	ENST00000425597		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000336216	ENST00000562212		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-3UTR	ENST00000336216	ENST00000565923		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000336216	ENST00000545456		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000336216	ENST00000361900		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-intron	ENST00000336216	ENST00000568081		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000381714	ENST00000425597		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000381714	ENST00000562212		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-3UTR	ENST00000381714	ENST00000565923		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000381714	ENST00000545456		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-5UTR	ENST00000381714	ENST00000361900		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
5UTR-intron	ENST00000381714	ENST00000568081		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	HMG20A	chr15	77713346	+	SCAMP5	chr15	75304133	+
In-frame	ENST00000370551	ENST00000370558		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
5CDS-5UTR	ENST00000370551	ENST00000535010		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
5CDS-5UTR	ENST00000370551	ENST00000482504		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
In-frame	ENST00000370550	ENST00000370558		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
5CDS-5UTR	ENST00000370550	ENST00000535010		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
5CDS-5UTR	ENST00000370550	ENST00000482504		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
intron-3CDS	ENST00000356813	ENST00000370558		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
intron-5UTR	ENST00000356813	ENST00000535010		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
intron-5UTR	ENST00000356813	ENST00000482504		TCGA	RV	LIHC	TCGA-DD-AAEG-01A	HS2ST1	chr1	87380843	+	SH3GLB1	chr1	87185190	+
5UTR-3CDS	ENST00000424272	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000424272	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000424272	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000424272	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409929	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409929	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409929	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000409929	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409589	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409589	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409589	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000409589	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409329	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409329	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409329	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000409329	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409288	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409288	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000409288	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000409288	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000410023	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000410023	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000410023	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000410023	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000233946	ENST00000332549		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000233946	ENST00000393414		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-3CDS	ENST00000233946	ENST00000441002		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5UTR-intron	ENST00000233946	ENST00000485335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	IL1R1	chr2	102770477	+	IL1R2	chr2	102632333	+
5CDS-3UTR	ENST00000524189	ENST00000475548		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000524189	ENST00000358743		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000524189	ENST00000347557		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000524189	ENST00000333137		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-intron	ENST00000524189	ENST00000404574		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
intron-3UTR	ENST00000521515	ENST00000475548		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
intron-3UTR	ENST00000521515	ENST00000358743		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
intron-3UTR	ENST00000521515	ENST00000347557		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
intron-3UTR	ENST00000521515	ENST00000333137		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
intron-intron	ENST00000521515	ENST00000404574		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000404075	ENST00000475548		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000404075	ENST00000358743		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000404075	ENST00000347557		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-3UTR	ENST00000404075	ENST00000333137		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5CDS-intron	ENST00000404075	ENST00000404574		TCGA	RV	LIHC	TCGA-G3-A25Y-01A	KIF13B	chr8	28929137	-	SMTN	chr22	31483951	+
5UTR-3CDS	ENST00000540664	ENST00000369519		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-intron	ENST00000540664	ENST00000480343		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-3CDS	ENST00000371103	ENST00000369519		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-intron	ENST00000371103	ENST00000480343		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-3CDS	ENST00000356016	ENST00000369519		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-intron	ENST00000356016	ENST00000480343		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-3CDS	ENST00000371097	ENST00000369519		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
5UTR-intron	ENST00000371097	ENST00000480343		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
intron-3CDS	ENST00000498444	ENST00000369519		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
intron-intron	ENST00000498444	ENST00000480343		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LCOR	chr10	98593236	+	RBM20	chr10	112540559	+
In-frame	ENST00000542728	ENST00000337231		TCGA	RV	LIHC	TCGA-BC-A10T-01A	LOH12CR1	chr12	12514283	+	CDR2L	chr17	72995599	+
In-frame	ENST00000314565	ENST00000337231		TCGA	RV	LIHC	TCGA-BC-A10T-01A	LOH12CR1	chr12	12514283	+	CDR2L	chr17	72995599	+
intron-3CDS	ENST00000298571	ENST00000337231		TCGA	RV	LIHC	TCGA-BC-A10T-01A	LOH12CR1	chr12	12514283	+	CDR2L	chr17	72995599	+
3UTR-intron	ENST00000500890	ENST00000432306		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
3UTR-intron	ENST00000500890	ENST00000393077		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
3UTR-intron	ENST00000500890	ENST00000483122		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000507827	ENST00000432306		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000507827	ENST00000393077		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000507827	ENST00000483122		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000336356	ENST00000432306		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000336356	ENST00000393077		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000336356	ENST00000483122		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LRAT	chr4	155557548	+	VTI1A	chr10	114575049	+
Frame-shit	ENST00000400897	ENST00000304457		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
Frame-shit	ENST00000400897	ENST00000376936		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
Frame-shit	ENST00000400897	ENST00000544779		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
5CDS-intron	ENST00000400897	ENST00000485606		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000400898	ENST00000304457		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000400898	ENST00000376936		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000400898	ENST00000544779		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
intron-intron	ENST00000400898	ENST00000485606		TCGA	RV	LIHC	TCGA-FV-A495-01A	MASP2	chr1	11090233	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000377316	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
intron-intron	ENST00000377316	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000377321	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000377321	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000377326	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000377326	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
Frame-shit	ENST00000312049	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000312049	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000315422	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000315422	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
Frame-shit	ENST00000443283	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000443283	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000394374	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000394374	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000337652	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000337652	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
Frame-shit	ENST00000394376	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000394376	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000377313	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5CDS-intron	ENST00000377313	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5UTR-3CDS	ENST00000478548	ENST00000342711		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
5UTR-intron	ENST00000478548	ENST00000491280		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MEN1	chr11	64572506	-	CDC42BPG	chr11	64608120	-
In-frame	ENST00000323666	ENST00000436874		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000323666	ENST00000261219		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
5CDS-3UTR	ENST00000323666	ENST00000356859		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000546753	ENST00000436874		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000546753	ENST00000261219		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
5CDS-3UTR	ENST00000546753	ENST00000356859		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000261220	ENST00000436874		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000261220	ENST00000261219		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
5CDS-3UTR	ENST00000261220	ENST00000356859		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000550777	ENST00000436874		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000550777	ENST00000261219		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
5CDS-3UTR	ENST00000550777	ENST00000356859		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000551840	ENST00000436874		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
In-frame	ENST00000551840	ENST00000261219		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
5CDS-3UTR	ENST00000551840	ENST00000356859		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	METAP2	chr12	95889874	+	VEZT	chr12	95689827	+
Frame-shit	ENST00000317552	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000317552	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000317552	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000317552	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000317552	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000317552	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000317552	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000317552	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000453318	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000453318	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000453318	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000453318	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000453318	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000453318	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000453318	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000453318	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380779	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380779	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380779	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380779	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380779	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380779	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380779	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000380779	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380780	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380780	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380780	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380780	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380780	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380780	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380780	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000380780	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380785	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380785	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380785	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
In-frame	ENST00000380785	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380785	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380785	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380785	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000380785	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380787	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380787	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380787	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380787	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380787	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380787	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380787	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000380787	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380782	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380782	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380782	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000380782	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380782	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380782	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000380782	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000380782	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000337414		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000380718		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000380732		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479925	ENST00000534860		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479925	ENST00000380736		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479925	ENST00000303025		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479925	ENST00000413512		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000479925	ENST00000491514		TCGA	RV	LIHC	TCGA-DD-AACH-01A	MID1	chrX	10450520	-	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000397063	ENST00000394084		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000469528		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000394105		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000265956		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000394104		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000470056		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000394083		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000495955		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000297933		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397063	ENST00000312123		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000394084		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000469528		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000394105		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000265956		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000394104		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000470056		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000394083		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000495955		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000297933		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000397062	ENST00000312123		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000394084		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000469528		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000394105		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000265956		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000394104		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000470056		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000394083		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000495955		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000297933		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000446151	ENST00000312123		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000394084		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000469528		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000394105		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000265956		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000394104		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000470056		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000394083		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000495955		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000297933		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
5CDS-intron	ENST00000464747	ENST00000312123		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000394084		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000469528		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000394105		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000265956		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000394104		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000470056		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000394083		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000495955		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000297933		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
intron-intron	ENST00000423513	ENST00000312123		TCGA	RV	LIHC	TCGA-DD-AACU-01A	NFE2L2	chr2	178097120	-	GAPVD1	chr9	128083712	+
Frame-shit	ENST00000589123	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000589123	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000589123	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000346156	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000346156	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000346156	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000395111	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000395111	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000395111	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000586919	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000586919	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000586919	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000341919	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000341919	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000341919	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000590282	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000590282	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000590282	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000443272	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
Frame-shit	ENST00000443272	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
5CDS-intron	ENST00000443272	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
intron-3CDS	ENST00000588839	ENST00000292672		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
intron-3CDS	ENST00000588839	ENST00000541430		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
intron-intron	ENST00000588839	ENST00000588101		TCGA	RV	LIHC	TCGA-DD-A11A-01A	NFIC	chr19	3452664	+	CELF5	chr19	3250983	+
intron-5UTR	ENST00000507120	ENST00000343470		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
intron-5UTR	ENST00000507120	ENST00000452476		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000416614	ENST00000343470		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000416614	ENST00000452476		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000314262	ENST00000343470		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000314262	ENST00000452476		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000502735	ENST00000343470		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000502735	ENST00000452476		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000398071	ENST00000343470		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000398071	ENST00000452476		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	NOP14	chr4	2951661	-	LYAR	chr4	4288299	-
Frame-shit	ENST00000376279	ENST00000376355		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000444838		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000376360		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000376354		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376279	ENST00000339105		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000376355		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000444838		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000376360		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000376354		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376286	ENST00000339105		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000376355		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000444838		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000376360		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000376354		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376285	ENST00000339105		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000376355		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000444838		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000376360		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000376354		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
intron-3CDS	ENST00000485946	ENST00000339105		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100764315	+	CLYBL	chr13	100425078	+
In-frame	ENST00000376279	ENST00000595437		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376279	ENST00000376586		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376279	ENST00000319562		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
5CDS-intron	ENST00000376279	ENST00000376581		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
5CDS-intron	ENST00000376279	ENST00000593990		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376286	ENST00000595437		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376286	ENST00000376586		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376286	ENST00000319562		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
5CDS-intron	ENST00000376286	ENST00000376581		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
5CDS-intron	ENST00000376286	ENST00000593990		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376285	ENST00000595437		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376285	ENST00000376586		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000376285	ENST00000319562		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
5CDS-intron	ENST00000376285	ENST00000376581		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
5CDS-intron	ENST00000376285	ENST00000593990		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
3UTR-3CDS	ENST00000485946	ENST00000595437		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
3UTR-3CDS	ENST00000485946	ENST00000376586		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
3UTR-3CDS	ENST00000485946	ENST00000319562		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
3UTR-intron	ENST00000485946	ENST00000376581		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
3UTR-intron	ENST00000485946	ENST00000593990		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PCCA	chr13	100809594	+	FARP1	chr13	98996016	+
In-frame	ENST00000282605	ENST00000265339		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
5CDS-intron	ENST00000282605	ENST00000511807		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
intron-3CDS	ENST00000515554	ENST00000265339		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
intron-intron	ENST00000515554	ENST00000511807		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
In-frame	ENST00000361895	ENST00000265339		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
5CDS-intron	ENST00000361895	ENST00000511807		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
intron-3CDS	ENST00000402835	ENST00000265339		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
intron-intron	ENST00000402835	ENST00000511807		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
In-frame	ENST00000395003	ENST00000265339		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
5CDS-intron	ENST00000395003	ENST00000511807		TCGA	RV	LIHC	TCGA-2Y-A9GY-01A	PHF15	chr5	133909452	+	UBE2B	chr5	133724016	+
In-frame	ENST00000268124	ENST00000281282		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	POLG	chr15	89866635	-	CGNL1	chr15	57808978	+
5CDS-intron	ENST00000268124	ENST00000557813		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	POLG	chr15	89866635	-	CGNL1	chr15	57808978	+
In-frame	ENST00000442287	ENST00000281282		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	POLG	chr15	89866635	-	CGNL1	chr15	57808978	+
5CDS-intron	ENST00000442287	ENST00000557813		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	POLG	chr15	89866635	-	CGNL1	chr15	57808978	+
intron-3CDS	ENST00000525806	ENST00000281282		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	POLG	chr15	89866635	-	CGNL1	chr15	57808978	+
intron-intron	ENST00000525806	ENST00000557813		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	POLG	chr15	89866635	-	CGNL1	chr15	57808978	+
Frame-shit	ENST00000423007	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000423007	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000404875	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000404875	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000341012	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000341012	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000372228	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000372228	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000419118	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000419118	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000402686	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000402686	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000541219	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000541219	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
Frame-shit	ENST00000354713	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-intron	ENST00000354713	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
3UTR-3CDS	ENST00000485278	ENST00000372264		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
3UTR-intron	ENST00000485278	ENST00000372261		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	POMT1	chr9	134386854	+	PPAPDC3	chr9	134183310	+
5CDS-5UTR	ENST00000367866	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
intron-5UTR	ENST00000452019	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
5CDS-5UTR	ENST00000429375	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
3UTR-5UTR	ENST00000367865	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
5CDS-5UTR	ENST00000541643	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
5CDS-5UTR	ENST00000420254	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
5CDS-5UTR	ENST00000367862	ENST00000368779		TCGA	RV	LIHC	TCGA-DD-A113-01A	POU2F1	chr1	167370793	+	LCE2A	chr1	152671358	+
intron-3CDS	ENST00000310455	ENST00000602723		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000310455	ENST00000400186		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000310455	ENST00000520002		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000310455	ENST00000602557		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000310455	ENST00000537824		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000310455	ENST00000542608		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-3CDS	ENST00000310455	ENST00000539096		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
intron-intron	ENST00000310455	ENST00000523387		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000602723		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000400186		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000520002		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000602557		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000537824		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000542608		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-3CDS	ENST00000519699	ENST00000539096		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5UTR-intron	ENST00000519699	ENST00000523387		TCGA	RV	LIHC	TCGA-2Y-A9H8-01A	PPP1R3B	chr8	9008857	-	CSMD1	chr8	3889621	-
5CDS-intron	ENST00000358825	ENST00000369646		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000358825	ENST00000257770		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000358825	ENST00000369651		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000304538	ENST00000369646		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000304538	ENST00000257770		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000304538	ENST00000369651		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000360871	ENST00000369646		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000360871	ENST00000257770		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000360871	ENST00000369651		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000423662	ENST00000369646		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000423662	ENST00000257770		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000423662	ENST00000369651		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000528746	ENST00000369646		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000528746	ENST00000257770		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000528746	ENST00000369651		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000526082	ENST00000369646		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000526082	ENST00000257770		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000526082	ENST00000369651		TCGA	RV	LIHC	TCGA-UB-A7ME-01A	PRDM10	chr11	129788434	-	NT5E	chr6	86194953	+
5CDS-intron	ENST00000413366	ENST00000555690		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRKCA	chr17	64302245	+	PPP4R4	chr14	94633881	+
5CDS-intron	ENST00000413366	ENST00000304338		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRKCA	chr17	64302245	+	PPP4R4	chr14	94633881	+
5CDS-intron	ENST00000413366	ENST00000328839		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRKCA	chr17	64302245	+	PPP4R4	chr14	94633881	+
3UTR-intron	ENST00000583361	ENST00000555690		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRKCA	chr17	64302245	+	PPP4R4	chr14	94633881	+
3UTR-intron	ENST00000583361	ENST00000304338		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRKCA	chr17	64302245	+	PPP4R4	chr14	94633881	+
3UTR-intron	ENST00000583361	ENST00000328839		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRKCA	chr17	64302245	+	PPP4R4	chr14	94633881	+
intron-5UTR	ENST00000494674	ENST00000380274		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRPF4B	chr6	4021700	+	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000494674	ENST00000380272		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRPF4B	chr6	4021700	+	FAM50B	chr6	3850023	+
5CDS-5UTR	ENST00000337659	ENST00000380274		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRPF4B	chr6	4021700	+	FAM50B	chr6	3850023	+
5CDS-5UTR	ENST00000337659	ENST00000380272		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRPF4B	chr6	4021700	+	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000538861	ENST00000380274		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRPF4B	chr6	4021700	+	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000538861	ENST00000380272		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PRPF4B	chr6	4021700	+	FAM50B	chr6	3850023	+
5UTR-3CDS	ENST00000431726	ENST00000232766		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	PTPN23	chr3	47422670	+	KLHL18	chr3	47371441	+
5UTR-3CDS	ENST00000431726	ENST00000455924		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	PTPN23	chr3	47422670	+	KLHL18	chr3	47371441	+
5UTR-intron	ENST00000431726	ENST00000483201		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	PTPN23	chr3	47422670	+	KLHL18	chr3	47371441	+
Frame-shit	ENST00000265562	ENST00000232766		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	PTPN23	chr3	47422670	+	KLHL18	chr3	47371441	+
Frame-shit	ENST00000265562	ENST00000455924		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	PTPN23	chr3	47422670	+	KLHL18	chr3	47371441	+
5CDS-intron	ENST00000265562	ENST00000483201		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	PTPN23	chr3	47422670	+	KLHL18	chr3	47371441	+
In-frame	ENST00000343529	ENST00000354883		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
In-frame	ENST00000343529	ENST00000336733		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000343529	ENST00000536651		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000343529	ENST00000413054		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000343529	ENST00000484768		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
In-frame	ENST00000428762	ENST00000354883		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
In-frame	ENST00000428762	ENST00000336733		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000428762	ENST00000536651		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000428762	ENST00000413054		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000428762	ENST00000484768		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
In-frame	ENST00000424685	ENST00000354883		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
In-frame	ENST00000424685	ENST00000336733		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000424685	ENST00000536651		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000424685	ENST00000413054		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5CDS-3UTR	ENST00000424685	ENST00000484768		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
intron-3CDS	ENST00000473945	ENST00000354883		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
intron-3CDS	ENST00000473945	ENST00000336733		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
intron-3UTR	ENST00000473945	ENST00000536651		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
intron-3UTR	ENST00000473945	ENST00000413054		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
intron-3UTR	ENST00000473945	ENST00000484768		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	RELN	chr7	103130189	-	SLC25A26	chr3	66419902	+
5UTR-3CDS	ENST00000468480	ENST00000454872		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5UTR-intron	ENST00000468480	ENST00000473253		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
Frame-shit	ENST00000346166	ENST00000454872		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5CDS-intron	ENST00000346166	ENST00000473253		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
Frame-shit	ENST00000381588	ENST00000454872		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5CDS-intron	ENST00000381588	ENST00000473253		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
Frame-shit	ENST00000381570	ENST00000454872		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5CDS-intron	ENST00000381570	ENST00000473253		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5UTR-3CDS	ENST00000399762	ENST00000454872		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5UTR-intron	ENST00000399762	ENST00000473253		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	RNF6	chr13	26792648	-	NAALADL2	chr3	175455094	+
5CDS-5UTR	ENST00000545643	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000545643	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000545643	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000545643	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000545643	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000545643	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000545643	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-5UTR	ENST00000537760	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000537760	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000537760	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000537760	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000537760	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000537760	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000537760	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-5UTR	ENST00000414023	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000414023	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000414023	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000414023	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000414023	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000414023	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000414023	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-5UTR	ENST00000529237	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000529237	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000529237	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000529237	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000529237	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000529237	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000529237	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-5UTR	ENST00000256196	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000256196	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000256196	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000256196	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000256196	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000256196	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
5CDS-intron	ENST00000256196	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-5UTR	ENST00000534746	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000534746	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000534746	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000534746	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000534746	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000534746	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000534746	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-5UTR	ENST00000526063	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000526063	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000526063	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000526063	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000526063	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000526063	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000526063	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-5UTR	ENST00000532814	ENST00000418988		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000532814	ENST00000555531		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000532814	ENST00000419365		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000532814	ENST00000524606		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000532814	ENST00000396394		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000532814	ENST00000396393		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000532814	ENST00000530457		TCGA	RV	LIHC	TCGA-FV-A496-01A	RRAS2	chr11	14380309	-	PSMA1	chr11	14632697	-
Frame-shit	ENST00000355875	ENST00000367843		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000355875	ENST00000432587		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000355875	ENST00000312263		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000355875	ENST00000367840		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
5CDS-intron	ENST00000355875	ENST00000470919		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000366541	ENST00000367843		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000366541	ENST00000432587		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000366541	ENST00000312263		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000366541	ENST00000367840		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
5CDS-intron	ENST00000366541	ENST00000470919		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000343783	ENST00000367843		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000343783	ENST00000432587		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000343783	ENST00000312263		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
Frame-shit	ENST00000343783	ENST00000367840		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
5CDS-intron	ENST00000343783	ENST00000470919		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000391846	ENST00000367843		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000391846	ENST00000432587		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000391846	ENST00000312263		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000391846	ENST00000367840		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-intron	ENST00000391846	ENST00000470919		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000496361	ENST00000367843		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000496361	ENST00000432587		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000496361	ENST00000312263		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000496361	ENST00000367840		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-intron	ENST00000496361	ENST00000470919		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	SDCCAG8	chr1	243542165	+	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000440909	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000440909	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000440909	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000440909	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000448921	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000448921	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000448921	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000437397	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000437397	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000437397	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000355814	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000355814	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000355814	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000393087	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000393087	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000393087	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-3UTR	ENST00000393088	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-3UTR	ENST00000393088	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-3UTR	ENST00000393088	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000404814	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000404814	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000404814	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000449399	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000449399	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000449399	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000402629	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000402629	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000402629	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000555289	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000555289	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000555289	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-intron	ENST00000440909	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000440909	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000440909	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000440909	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000448921	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000448921	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000448921	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000448921	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000437397	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000437397	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000437397	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000437397	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000355814	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000355814	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000355814	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000355814	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393087	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393087	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393087	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393087	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393088	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393088	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393088	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000393088	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000404814	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000404814	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000404814	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000404814	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000449399	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000449399	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000449399	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000449399	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000402629	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000402629	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000402629	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000402629	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000555289	ENST00000438045		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000555289	ENST00000248633		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000555289	ENST00000428214		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
intron-intron	ENST00000555289	ENST00000541751		TCGA	RV	LIHC	TCGA-CC-5261-01A	SERPINA1	chr14	94843084	-	PEX1	chr7	92146729	-
5UTR-3CDS	ENST00000474528	ENST00000406785		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000542756		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000403092		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000405901		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000402441		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000405269		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000542024		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000332839		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000406391		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5UTR-intron	ENST00000474528	ENST00000408028		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
Frame-shit	ENST00000272433	ENST00000406785		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000542756		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000403092		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000405901		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000402441		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000405269		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000542024		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000332839		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000406391		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000272433	ENST00000408028		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
Frame-shit	ENST00000410065	ENST00000406785		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000542756		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000403092		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000405901		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000402441		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000405269		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000542024		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000332839		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000406391		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
5CDS-intron	ENST00000410065	ENST00000408028		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	SFXN5	chr2	73247368	-	SLC8A1	chr2	40404995	-
Frame-shit	ENST00000269886	ENST00000262960		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
Frame-shit	ENST00000269886	ENST00000598800		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000269886	ENST00000597849		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000269886	ENST00000594671		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000269886	ENST00000601173		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
Frame-shit	ENST00000598564	ENST00000262960		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
Frame-shit	ENST00000598564	ENST00000598800		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000598564	ENST00000597849		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000598564	ENST00000594671		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000598564	ENST00000601173		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
Frame-shit	ENST00000417295	ENST00000262960		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
Frame-shit	ENST00000417295	ENST00000598800		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000417295	ENST00000597849		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000417295	ENST00000594671		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
5CDS-intron	ENST00000417295	ENST00000601173		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	SH3GL1	chr19	4400321	-	DPP9	chr19	4679958	-
3UTR-3CDS	ENST00000460783	ENST00000327783		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000389125		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000399913		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000399914		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000535441		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000389124		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000399907		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000399909		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-3CDS	ENST00000460783	ENST00000309434		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-5UTR	ENST00000460783	ENST00000472429		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000327783		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000389125		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000399913		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000399914		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000535441		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000389124		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000399907		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000399909		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000290399	ENST00000309434		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
5CDS-5UTR	ENST00000290399	ENST00000472429		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000327783		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000389125		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000399913		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000399914		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000535441		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000389124		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000399907		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000399909		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
In-frame	ENST00000430056	ENST00000309434		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
5CDS-5UTR	ENST00000430056	ENST00000472429		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SIM2	chr21	38072221	+	GRIK1	chr21	31066382	-
3UTR-5UTR	ENST00000381482	ENST00000401815		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
3UTR-5UTR	ENST00000381482	ENST00000323007		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
3UTR-5UTR	ENST00000246032	ENST00000401815		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
3UTR-5UTR	ENST00000246032	ENST00000323007		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
intron-5UTR	ENST00000400064	ENST00000401815		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
intron-5UTR	ENST00000400064	ENST00000323007		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	STK35	chr20	2098061	+	GP5	chr3	194119013	-
In-frame	ENST00000263918	ENST00000260637		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
In-frame	ENST00000263918	ENST00000379149		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
In-frame	ENST00000263918	ENST00000535679		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
5CDS-5UTR	ENST00000263918	ENST00000407963		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
In-frame	ENST00000379213	ENST00000260637		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
In-frame	ENST00000379213	ENST00000379149		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
In-frame	ENST00000379213	ENST00000535679		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
5CDS-5UTR	ENST00000379213	ENST00000407963		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	STRN	chr2	37126666	-	SULT6B1	chr2	37415690	-
In-frame	ENST00000186436	ENST00000264111		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000186436	ENST00000397081		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000186436	ENST00000409036		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000186436	ENST00000397087		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000186436	ENST00000538974		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000186436	ENST00000540783		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000186436	ENST00000539331		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
5CDS-3UTR	ENST00000186436	ENST00000473043		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
5CDS-3UTR	ENST00000186436	ENST00000535187		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000264111		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000397081		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000409036		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000397087		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000538974		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000540783		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
In-frame	ENST00000425805	ENST00000539331		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
5CDS-3UTR	ENST00000425805	ENST00000473043		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
5CDS-3UTR	ENST00000425805	ENST00000535187		TCGA	RV	LIHC	TCGA-FV-A3I1-01A	TMEM131	chr2	98458278	-	RAPGEF4	chr2	173855538	+
5CDS-5UTR	ENST00000557636	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-3UTR	ENST00000557636	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000557636	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000557636	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000557636	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000286650	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-3UTR	ENST00000286650	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000286650	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000286650	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000286650	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000298832	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-3UTR	ENST00000298832	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000298832	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000298832	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000298832	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000556893	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-3UTR	ENST00000556893	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000556893	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000556893	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000556893	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000554510	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-3UTR	ENST00000554510	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000554510	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000554510	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000554510	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000556977	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-3UTR	ENST00000556977	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000556977	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000556977	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000556977	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000555422	ENST00000419727		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-3UTR	ENST00000555422	ENST00000559773		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000555422	ENST00000437176		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000555422	ENST00000435893		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-5UTR	ENST00000555422	ENST00000267569		TCGA	RV	LIHC	TCGA-BC-4073-01B	TTLL5	chr14	76129566	+	JDP2	chr14	75904601	+
intron-intron	ENST00000237014	ENST00000371917		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	TTR	chr18	29178984	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000237014	ENST00000493140		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	TTR	chr18	29178984	+	ARFGEF2	chr20	47615777	+
intron-3CDS	ENST00000346141	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000346141	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000346141	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000346141	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
Frame-shit	ENST00000325752	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
Frame-shit	ENST00000325752	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000325752	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000325752	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000340993	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000340993	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000340993	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000340993	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
Frame-shit	ENST00000394239	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
Frame-shit	ENST00000394239	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000394239	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000394239	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
In-frame	ENST00000592426	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
In-frame	ENST00000592426	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000592426	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000592426	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000376094	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000376094	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000376094	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000376094	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
Frame-shit	ENST00000539018	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
Frame-shit	ENST00000539018	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000539018	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000539018	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000591611	ENST00000300896		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000591611	ENST00000592339		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000591611	ENST00000393003		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
intron-intron	ENST00000591611	ENST00000586881		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57951900	-	USP32	chr17	58300947	-
In-frame	ENST00000264689	ENST00000393540		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
Frame-shit	ENST00000264689	ENST00000307588		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
5CDS-intron	ENST00000264689	ENST00000510617		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
5CDS-intron	ENST00000264689	ENST00000507501		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
intron-3CDS	ENST00000502282	ENST00000393540		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
intron-3CDS	ENST00000502282	ENST00000307588		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
intron-intron	ENST00000502282	ENST00000510617		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
intron-intron	ENST00000502282	ENST00000507501		TCGA	RV	LIHC	TCGA-DD-AAVP-01A	UFSP2	chr4	186334880	-	CCDC110	chr4	186366696	-
Frame-shit	ENST00000398571	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
Frame-shit	ENST00000398571	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
intron-3CDS	ENST00000472689	ENST00000426997		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
intron-3CDS	ENST00000472689	ENST00000432605		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	USP34	chr2	61417406	-	C2orf74	chr2	61391489	+
Frame-shit	ENST00000609104	ENST00000369110		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	USP6NL	chr10	11639630	-	PREP	chr6	105845802	-
intron-3CDS	ENST00000277575	ENST00000369110		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	USP6NL	chr10	11639630	-	PREP	chr6	105845802	-
intron-3CDS	ENST00000379237	ENST00000369110		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	USP6NL	chr10	11639630	-	PREP	chr6	105845802	-
intron-3CDS	ENST00000443016	ENST00000369110		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	USP6NL	chr10	11639630	-	PREP	chr6	105845802	-
intron-3CDS	ENST00000609853	ENST00000369110		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	USP6NL	chr10	11639630	-	PREP	chr6	105845802	-
Frame-shit	ENST00000265351	ENST00000503581		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
Frame-shit	ENST00000265351	ENST00000370621		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
Frame-shit	ENST00000265351	ENST00000370616		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
5CDS-intron	ENST00000265351	ENST00000393380		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
5CDS-intron	ENST00000265351	ENST00000342421		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
5CDS-intron	ENST00000265351	ENST00000370618		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
5CDS-intron	ENST00000265351	ENST00000486069		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-3CDS	ENST00000424378	ENST00000503581		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-3CDS	ENST00000424378	ENST00000370621		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-3CDS	ENST00000424378	ENST00000370616		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-intron	ENST00000424378	ENST00000393380		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-intron	ENST00000424378	ENST00000342421		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-intron	ENST00000424378	ENST00000370618		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-intron	ENST00000424378	ENST00000486069		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XPO5	chr6	43514308	-	EYS	chr6	64436573	-
intron-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000462705	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000393785	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000481632	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000471418	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000357258	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000464560	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000488663	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000474710	ENST00000498645		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	115571464	-
In-frame	ENST00000278618	ENST00000298992		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	AASDHPPT	chr11	105950419	+	ABTB2	chr11	34226237	-
In-frame	ENST00000278618	ENST00000435224		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	AASDHPPT	chr11	105950419	+	ABTB2	chr11	34226237	-
5CDS-5UTR	ENST00000278618	ENST00000530814		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	AASDHPPT	chr11	105950419	+	ABTB2	chr11	34226237	-
In-frame	ENST00000225402	ENST00000378526		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	AATF	chr17	35348156	+	LIG3	chr17	33325623	+
In-frame	ENST00000225402	ENST00000262327		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	AATF	chr17	35348156	+	LIG3	chr17	33325623	+
5CDS-intron	ENST00000225402	ENST00000586407		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	AATF	chr17	35348156	+	LIG3	chr17	33325623	+
intron-3CDS	ENST00000590321	ENST00000378526		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	AATF	chr17	35348156	+	LIG3	chr17	33325623	+
intron-3CDS	ENST00000590321	ENST00000262327		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	AATF	chr17	35348156	+	LIG3	chr17	33325623	+
intron-intron	ENST00000590321	ENST00000586407		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	AATF	chr17	35348156	+	LIG3	chr17	33325623	+
Frame-shit	ENST00000326793	ENST00000357674		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000314062		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000346964		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000419354		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000452595		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000422288		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000448528		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000443183		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000450955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
Frame-shit	ENST00000326793	ENST00000392382		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
5CDS-intron	ENST00000326793	ENST00000485409		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000357674		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000314062		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000346964		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000419354		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000452595		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000422288		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000448528		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000443183		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000450955		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-3CDS	ENST00000472860	ENST00000392382		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
intron-intron	ENST00000472860	ENST00000485409		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ACAP2	chr3	195112819	-	DLG1	chr3	196778539	-
5CDS-5UTR	ENST00000294016	ENST00000397189		TCGA	RV	LIHC	TCGA-ED-A4XI-01A	ADCY9	chr16	4163751	-	PHF16	chrX	46844285	+
5CDS-5UTR	ENST00000294016	ENST00000218343		TCGA	RV	LIHC	TCGA-ED-A4XI-01A	ADCY9	chr16	4163751	-	PHF16	chrX	46844285	+
intron-5UTR	ENST00000571889	ENST00000397189		TCGA	RV	LIHC	TCGA-ED-A4XI-01A	ADCY9	chr16	4163751	-	PHF16	chrX	46844285	+
intron-5UTR	ENST00000571889	ENST00000218343		TCGA	RV	LIHC	TCGA-ED-A4XI-01A	ADCY9	chr16	4163751	-	PHF16	chrX	46844285	+
Frame-shit	ENST00000541428	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
Frame-shit	ENST00000541428	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
5CDS-intron	ENST00000541428	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
5CDS-intron	ENST00000541428	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
5CDS-intron	ENST00000541428	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
Frame-shit	ENST00000379454	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
Frame-shit	ENST00000379454	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
5CDS-intron	ENST00000379454	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
5CDS-intron	ENST00000379454	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
5CDS-intron	ENST00000379454	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000523897	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000523897	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000523897	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000523897	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000523897	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000522919	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000522919	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522919	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522919	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522919	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000356457	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000356457	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000356457	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000356457	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000356457	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000518068	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000518068	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000518068	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000518068	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000518068	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517903	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517903	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517903	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517903	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517903	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000445642	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000445642	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000445642	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000445642	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000445642	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517847	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517847	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517847	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517847	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517847	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000522835	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000522835	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522835	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522835	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522835	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517856	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517856	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517856	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517856	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517856	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000389204	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000389204	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000389204	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000389204	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000389204	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000522603	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000522603	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522603	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522603	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000522603	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000379449	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000379449	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000379449	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000379449	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000379449	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517661	ENST00000360631		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-3CDS	ENST00000517661	ENST00000255448		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517661	ENST00000379892		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517661	ENST00000379893		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
intron-intron	ENST00000517661	ENST00000460982		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ASPH	chr8	62438536	-	DCLK1	chr13	36397012	-
Frame-shit	ENST00000370557	ENST00000370540		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	ATP11C	chrX	139014175	-	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000327569	ENST00000370540		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	ATP11C	chrX	139014175	-	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000361648	ENST00000370540		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	ATP11C	chrX	139014175	-	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000460773	ENST00000370540		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	ATP11C	chrX	139014175	-	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000370543	ENST00000370540		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	ATP11C	chrX	139014175	-	CXorf66	chrX	139040376	-
intron-3CDS	ENST00000359686	ENST00000370540		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	ATP11C	chrX	139014175	-	CXorf66	chrX	139040376	-
Frame-shit	ENST00000308664	ENST00000552912		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000308664	ENST00000242591		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000308664	ENST00000361948		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
5CDS-3UTR	ENST00000308664	ENST00000549009		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000395494	ENST00000552912		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000395494	ENST00000242591		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000395494	ENST00000361948		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
5CDS-3UTR	ENST00000395494	ENST00000549009		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000539276	ENST00000552912		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000539276	ENST00000242591		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
Frame-shit	ENST00000539276	ENST00000361948		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
5CDS-3UTR	ENST00000539276	ENST00000549009		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
3UTR-3CDS	ENST00000550248	ENST00000552912		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
3UTR-3CDS	ENST00000550248	ENST00000242591		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
3UTR-3CDS	ENST00000550248	ENST00000361948		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
3UTR-3UTR	ENST00000550248	ENST00000549009		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
intron-3CDS	ENST00000552636	ENST00000552912		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
intron-3CDS	ENST00000552636	ENST00000242591		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
intron-3CDS	ENST00000552636	ENST00000361948		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
intron-3UTR	ENST00000552636	ENST00000549009		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110584758	+
5CDS-intron	ENST00000259407	ENST00000300134		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000259407	ENST00000538913		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000259407	ENST00000543873		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000259407	ENST00000556155		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000259407	ENST00000537215		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000259407	ENST00000454075		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
intron-intron	ENST00000395051	ENST00000300134		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
intron-intron	ENST00000395051	ENST00000538913		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
intron-intron	ENST00000395051	ENST00000543873		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
intron-intron	ENST00000395051	ENST00000556155		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
intron-intron	ENST00000395051	ENST00000537215		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
intron-intron	ENST00000395051	ENST00000454075		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	BAAT	chr9	104122699	-	STAT6	chr12	57496773	-
3UTR-3CDS	ENST00000339834	ENST00000448841		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
3UTR-3CDS	ENST00000339834	ENST00000369889		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
3UTR-3CDS	ENST00000369883	ENST00000448841		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
3UTR-3CDS	ENST00000369883	ENST00000369889		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	C10orf32	chr10	104622689	+	WBP1L	chr10	104569650	+
Frame-shit	ENST00000300006	ENST00000373894		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
5CDS-intron	ENST00000300006	ENST00000373888		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
5CDS-intron	ENST00000300006	ENST00000466793		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
5CDS-intron	ENST00000300006	ENST00000549094		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
Frame-shit	ENST00000566490	ENST00000373894		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
5CDS-intron	ENST00000566490	ENST00000373888		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
5CDS-intron	ENST00000566490	ENST00000466793		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
5CDS-intron	ENST00000566490	ENST00000549094		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-3CDS	ENST00000452191	ENST00000373894		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000452191	ENST00000373888		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000452191	ENST00000466793		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000452191	ENST00000549094		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-3CDS	ENST00000561692	ENST00000373894		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000561692	ENST00000373888		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000561692	ENST00000466793		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000561692	ENST00000549094		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-3CDS	ENST00000565913	ENST00000373894		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000565913	ENST00000373888		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000565913	ENST00000466793		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-intron	ENST00000565913	ENST00000549094		TCGA	RV	LIHC	TCGA-FV-A495-01A	C16orf45	chr16	15528616	+	SMPDL3B	chr1	28284987	+
intron-3UTR	ENST00000531028	ENST00000202028		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000531028	ENST00000373950		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000531028	ENST00000441639		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000531028	ENST00000373946		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000531028	ENST00000338074		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-intron	ENST00000531028	ENST00000373941		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-intron	ENST00000531028	ENST00000479336		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000278559	ENST00000202028		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000278559	ENST00000373950		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000278559	ENST00000441639		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000278559	ENST00000373946		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-3UTR	ENST00000278559	ENST00000338074		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-intron	ENST00000278559	ENST00000373941		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5CDS-intron	ENST00000278559	ENST00000479336		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000529629	ENST00000202028		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000529629	ENST00000373950		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000529629	ENST00000441639		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000529629	ENST00000373946		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000529629	ENST00000338074		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-intron	ENST00000529629	ENST00000373941		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-intron	ENST00000529629	ENST00000479336		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000456580	ENST00000202028		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000456580	ENST00000373950		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000456580	ENST00000441639		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000456580	ENST00000373946		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-3UTR	ENST00000456580	ENST00000338074		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-intron	ENST00000456580	ENST00000373941		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
intron-intron	ENST00000456580	ENST00000479336		TCGA	RV	LIHC	TCGA-FV-A3R2-01A	CAPN5	chr11	76837196	+	EPB41L1	chr20	34818077	+
5UTR-3CDS	ENST00000261401	ENST00000337019		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-3CDS	ENST00000261401	ENST00000366889		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-3CDS	ENST00000261401	ENST00000366888		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-intron	ENST00000261401	ENST00000542669		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000541050	ENST00000337019		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000541050	ENST00000366889		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000541050	ENST00000366888		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-intron	ENST00000541050	ENST00000542669		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-3CDS	ENST00000549384	ENST00000337019		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-3CDS	ENST00000549384	ENST00000366889		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-3CDS	ENST00000549384	ENST00000366888		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
5UTR-intron	ENST00000549384	ENST00000542669		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000421578	ENST00000337019		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000421578	ENST00000366889		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000421578	ENST00000366888		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-intron	ENST00000421578	ENST00000542669		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000420959	ENST00000337019		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000420959	ENST00000366889		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000420959	ENST00000366888		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-intron	ENST00000420959	ENST00000542669		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000549772	ENST00000337019		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000549772	ENST00000366889		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-3CDS	ENST00000549772	ENST00000366888		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
intron-intron	ENST00000549772	ENST00000542669		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	CORO1C	chr12	109125205	-	PACRG	chr6	163735859	+
In-frame	ENST00000359866	ENST00000595618		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DDA1	chr19	17426804	+	MYO9B	chr19	17270205	+
In-frame	ENST00000359866	ENST00000594824		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DDA1	chr19	17426804	+	MYO9B	chr19	17270205	+
In-frame	ENST00000359866	ENST00000397274		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DDA1	chr19	17426804	+	MYO9B	chr19	17270205	+
5CDS-intron	ENST00000359866	ENST00000593411		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DDA1	chr19	17426804	+	MYO9B	chr19	17270205	+
In-frame	ENST00000396821	ENST00000325157		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
5CDS-intron	ENST00000396821	ENST00000490326		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
intron-3CDS	ENST00000444597	ENST00000325157		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
intron-intron	ENST00000444597	ENST00000490326		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
In-frame	ENST00000381633	ENST00000325157		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
5CDS-intron	ENST00000381633	ENST00000490326		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
5UTR-3CDS	ENST00000432525	ENST00000325157		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
5UTR-intron	ENST00000432525	ENST00000490326		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DDX17	chr22	38889715	-	ENTHD1	chr22	40161614	-
intron-3CDS	ENST00000321117	ENST00000380649		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000321117	ENST00000457468		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-intron	ENST00000321117	ENST00000461025		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000264709	ENST00000380649		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000264709	ENST00000457468		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-intron	ENST00000264709	ENST00000461025		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000406659	ENST00000380649		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000406659	ENST00000457468		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-intron	ENST00000406659	ENST00000461025		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000380746	ENST00000380649		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
Frame-shit	ENST00000380746	ENST00000457468		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
5CDS-intron	ENST00000380746	ENST00000461025		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
5UTR-3CDS	ENST00000402667	ENST00000380649		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
5UTR-3CDS	ENST00000402667	ENST00000457468		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
5UTR-intron	ENST00000402667	ENST00000461025		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000474887	ENST00000380649		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-3CDS	ENST00000474887	ENST00000457468		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
intron-intron	ENST00000474887	ENST00000461025		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	DNMT3A	chr2	25475063	-	HADHA	chr2	26438044	-
5CDS-3UTR	ENST00000389301	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000389301	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000389301	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000389301	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000568369	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000568369	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000568369	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000568369	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567284	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567284	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567284	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567284	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000389302	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000389302	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000389302	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000389302	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563673	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563673	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563673	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563673	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000534992	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000534992	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000534992	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000534992	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000543736	ENST00000564878		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000543736	ENST00000393062		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000543736	ENST00000378247		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000543736	ENST00000563972		TCGA	RV	LIHC	TCGA-CC-A8HT-01A	FANCA	chr16	89836245	-	SPIRE2	chr16	89911730	+
5CDS-5UTR	ENST00000335255	ENST00000382159		TCGA	RV	LIHC	TCGA-BC-A10T-01A	FOXK2	chr17	80521424	+	GNG7	chr19	2520723	-
intron-5UTR	ENST00000529652	ENST00000382159		TCGA	RV	LIHC	TCGA-BC-A10T-01A	FOXK2	chr17	80521424	+	GNG7	chr19	2520723	-
Frame-shit	ENST00000396081	ENST00000535891		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000396081	ENST00000258749		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000396081	ENST00000431169		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000396081	ENST00000538464		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
5CDS-5UTR	ENST00000396081	ENST00000491444		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000535891		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000258749		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000431169		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000538464		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
5CDS-5UTR	ENST00000311350	ENST00000491444		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000535891		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000258749		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000431169		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000538464		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-5UTR	ENST00000426180	ENST00000491444		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
In-frame	ENST00000259667	ENST00000342694		TCGA	RV	LIHC	TCGA-DD-AAW2-01A	HINT2	chr9	35814896	-	NPR2	chr9	35805508	+
intron-3CDS	ENST00000474908	ENST00000342694		TCGA	RV	LIHC	TCGA-DD-AAW2-01A	HINT2	chr9	35814896	-	NPR2	chr9	35805508	+
Frame-shit	ENST00000261023	ENST00000260570		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
Frame-shit	ENST00000261023	ENST00000359466		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
5CDS-5UTR	ENST00000261023	ENST00000416524		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
Frame-shit	ENST00000374907	ENST00000260570		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
Frame-shit	ENST00000374907	ENST00000359466		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
5CDS-5UTR	ENST00000374907	ENST00000416524		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
Frame-shit	ENST00000433736	ENST00000260570		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
Frame-shit	ENST00000433736	ENST00000359466		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
5CDS-5UTR	ENST00000433736	ENST00000416524		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
intron-3CDS	ENST00000474571	ENST00000260570		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
intron-3CDS	ENST00000474571	ENST00000359466		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
intron-5UTR	ENST00000474571	ENST00000416524		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	ITGAV	chr2	187466878	+	IFT172	chr2	27708370	-
In-frame	ENST00000404771	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000404771	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000372440	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000372440	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000372443	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000372443	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000286628	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000286628	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000286627	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000286627	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000354353	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000354353	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000404857	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000404857	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000406533	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
5CDS-intron	ENST00000406533	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
intron-3CDS	ENST00000484507	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
intron-intron	ENST00000484507	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
intron-3CDS	ENST00000481070	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
intron-intron	ENST00000481070	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
intron-3CDS	ENST00000480683	ENST00000280333		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
intron-intron	ENST00000480683	ENST00000484400		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	KCNMA1	chr10	78880731	-	DOCK1	chr10	129249596	+
In-frame	ENST00000392903	ENST00000334464		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
5CDS-5UTR	ENST00000392903	ENST00000482496		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
In-frame	ENST00000260777	ENST00000334464		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
5CDS-5UTR	ENST00000260777	ENST00000482496		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
In-frame	ENST00000355371	ENST00000334464		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
5CDS-5UTR	ENST00000355371	ENST00000482496		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
5UTR-3CDS	ENST00000392901	ENST00000334464		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
5UTR-5UTR	ENST00000392901	ENST00000482496		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
intron-3CDS	ENST00000497044	ENST00000334464		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
intron-5UTR	ENST00000497044	ENST00000482496		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1598	chr10	118738767	-	PDZD8	chr10	119049859	-
intron-3CDS	ENST00000448637	ENST00000320895		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-3CDS	ENST00000448637	ENST00000507807		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-3CDS	ENST00000448637	ENST00000320927		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-intron	ENST00000448637	ENST00000506641		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
Frame-shit	ENST00000312675	ENST00000320895		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
Frame-shit	ENST00000312675	ENST00000507807		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
Frame-shit	ENST00000312675	ENST00000320927		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
5CDS-intron	ENST00000312675	ENST00000506641		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
Frame-shit	ENST00000543006	ENST00000320895		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
Frame-shit	ENST00000543006	ENST00000507807		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
Frame-shit	ENST00000543006	ENST00000320927		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
5CDS-intron	ENST00000543006	ENST00000506641		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-3CDS	ENST00000471917	ENST00000320895		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-3CDS	ENST00000471917	ENST00000507807		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-3CDS	ENST00000471917	ENST00000320927		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
intron-intron	ENST00000471917	ENST00000506641		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LPP	chr3	188478070	+	CLPTM1L	chr5	1338097	-
In-frame	ENST00000372009	ENST00000305366		TCGA	RV	LIHC	TCGA-BC-A217-01A	MAST2	chr1	46295253	+	TM4SF1	chr3	149093556	-
5CDS-intron	ENST00000372009	ENST00000472441		TCGA	RV	LIHC	TCGA-BC-A217-01A	MAST2	chr1	46295253	+	TM4SF1	chr3	149093556	-
In-frame	ENST00000361297	ENST00000305366		TCGA	RV	LIHC	TCGA-BC-A217-01A	MAST2	chr1	46295253	+	TM4SF1	chr3	149093556	-
5CDS-intron	ENST00000361297	ENST00000472441		TCGA	RV	LIHC	TCGA-BC-A217-01A	MAST2	chr1	46295253	+	TM4SF1	chr3	149093556	-
intron-3CDS	ENST00000477968	ENST00000305366		TCGA	RV	LIHC	TCGA-BC-A217-01A	MAST2	chr1	46295253	+	TM4SF1	chr3	149093556	-
intron-intron	ENST00000477968	ENST00000472441		TCGA	RV	LIHC	TCGA-BC-A217-01A	MAST2	chr1	46295253	+	TM4SF1	chr3	149093556	-
In-frame	ENST00000396863	ENST00000373030		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	MYBL2	chr20	42320959	+	IFT52	chr20	42249497	+
In-frame	ENST00000396863	ENST00000373039		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	MYBL2	chr20	42320959	+	IFT52	chr20	42249497	+
5CDS-intron	ENST00000396863	ENST00000471199		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	MYBL2	chr20	42320959	+	IFT52	chr20	42249497	+
In-frame	ENST00000217026	ENST00000373030		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	MYBL2	chr20	42320959	+	IFT52	chr20	42249497	+
In-frame	ENST00000217026	ENST00000373039		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	MYBL2	chr20	42320959	+	IFT52	chr20	42249497	+
5CDS-intron	ENST00000217026	ENST00000471199		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	MYBL2	chr20	42320959	+	IFT52	chr20	42249497	+
intron-3CDS	ENST00000523767	ENST00000451292		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000523767	ENST00000377797		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000523767	ENST00000445265		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000523767	ENST00000323668		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000523767	ENST00000439160		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000523767	ENST00000394269		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000523767	ENST00000504761		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000523767	ENST00000513346		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000523767	ENST00000506063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000261797	ENST00000451292		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000261797	ENST00000377797		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000261797	ENST00000445265		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000261797	ENST00000323668		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000261797	ENST00000439160		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000261797	ENST00000394269		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000261797	ENST00000504761		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000261797	ENST00000513346		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000261797	ENST00000506063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000521752	ENST00000451292		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000521752	ENST00000377797		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000521752	ENST00000445265		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000521752	ENST00000323668		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-3CDS	ENST00000521752	ENST00000439160		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000521752	ENST00000394269		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000521752	ENST00000504761		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000521752	ENST00000513346		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
intron-intron	ENST00000521752	ENST00000506063		TCGA	RV	LIHC	TCGA-DD-A11C-01A	NDST1	chr5	149865566	+	TCOF1	chr5	149769450	+
Frame-shit	ENST00000376279	ENST00000376355		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376279	ENST00000444838		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376279	ENST00000376360		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376279	ENST00000376354		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376279	ENST00000339105		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376286	ENST00000376355		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376286	ENST00000444838		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376286	ENST00000376360		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376286	ENST00000376354		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376286	ENST00000339105		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376285	ENST00000376355		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376285	ENST00000444838		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376285	ENST00000376360		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376285	ENST00000376354		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376285	ENST00000339105		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
intron-3CDS	ENST00000485946	ENST00000376355		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
intron-3CDS	ENST00000485946	ENST00000444838		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
intron-3CDS	ENST00000485946	ENST00000376360		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
intron-3CDS	ENST00000485946	ENST00000376354		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
intron-3CDS	ENST00000485946	ENST00000339105		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100888132	+	CLYBL	chr13	100511115	+
Frame-shit	ENST00000376279	ENST00000397601		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
In-frame	ENST00000376279	ENST00000343600		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
In-frame	ENST00000376279	ENST00000345429		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376279	ENST00000376673		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376279	ENST00000445661		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376286	ENST00000397601		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
In-frame	ENST00000376286	ENST00000343600		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
In-frame	ENST00000376286	ENST00000345429		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376286	ENST00000376673		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376286	ENST00000445661		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376285	ENST00000397601		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
In-frame	ENST00000376285	ENST00000343600		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
In-frame	ENST00000376285	ENST00000345429		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376285	ENST00000376673		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000376285	ENST00000445661		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
3UTR-3CDS	ENST00000485946	ENST00000397601		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
3UTR-3CDS	ENST00000485946	ENST00000343600		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
3UTR-3CDS	ENST00000485946	ENST00000345429		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
3UTR-3CDS	ENST00000485946	ENST00000376673		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
3UTR-3CDS	ENST00000485946	ENST00000445661		TCGA	RV	LIHC	TCGA-DD-AAD1-01A	PCCA	chr13	100809594	+	MBNL2	chr13	98043576	+
5CDS-intron	ENST00000337537	ENST00000321731		TCGA	RV	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60966148	-
5CDS-intron	ENST00000555899	ENST00000321731		TCGA	RV	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60966148	-
intron-intron	ENST00000422769	ENST00000321731		TCGA	RV	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60966148	-
5UTR-intron	ENST00000553266	ENST00000321731		TCGA	RV	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60966148	-
5CDS-5UTR	ENST00000397762	ENST00000337198		TCGA	RV	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21936516	-	AZIN1	chr8	103870378	-
5CDS-5UTR	ENST00000397762	ENST00000347770		TCGA	RV	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21936516	-	AZIN1	chr8	103870378	-
5CDS-intron	ENST00000397762	ENST00000522311		TCGA	RV	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21936516	-	AZIN1	chr8	103870378	-
5UTR-5UTR	ENST00000461909	ENST00000337198		TCGA	RV	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21936516	-	AZIN1	chr8	103870378	-
5UTR-5UTR	ENST00000461909	ENST00000347770		TCGA	RV	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21936516	-	AZIN1	chr8	103870378	-
5UTR-intron	ENST00000461909	ENST00000522311		TCGA	RV	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21936516	-	AZIN1	chr8	103870378	-
5CDS-5UTR	ENST00000369536	ENST00000451316		TCGA	RV	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33707038	-
5CDS-intron	ENST00000369536	ENST00000293756		TCGA	RV	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33707038	-
intron-5UTR	ENST00000497828	ENST00000451316		TCGA	RV	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33707038	-
intron-intron	ENST00000497828	ENST00000293756		TCGA	RV	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33707038	-
intron-3CDS	ENST00000440909	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000440909	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000440909	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000448921	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000448921	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000448921	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000437397	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000437397	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000437397	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000355814	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000355814	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000355814	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000393087	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000393087	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000393087	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
Frame-shit	ENST00000393088	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
Frame-shit	ENST00000393088	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
5CDS-3UTR	ENST00000393088	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000404814	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000404814	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000404814	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000449399	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000449399	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000449399	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000402629	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000402629	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000402629	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000555289	ENST00000225719		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000555289	ENST00000543464		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000555289	ENST00000584051		TCGA	RV	LIHC	TCGA-DD-A3A4-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
Frame-shit	ENST00000264930	ENST00000310581		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
In-frame	ENST00000264930	ENST00000296820		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264930	ENST00000334602		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264930	ENST00000508104		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000264930	ENST00000522877		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000282469	ENST00000296821		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000282469	ENST00000324642		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000509059	ENST00000296821		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000509059	ENST00000324642		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000356031	ENST00000296821		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000356031	ENST00000324642		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000440995	ENST00000296821		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
5CDS-intron	ENST00000440995	ENST00000324642		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
intron-intron	ENST00000303129	ENST00000296821		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
intron-intron	ENST00000303129	ENST00000324642		TCGA	RV	LIHC	TCGA-CC-5264-01A	SPEF2	chr5	35649527	+	SLC6A18	chr5	1242822	+
In-frame	ENST00000378164	ENST00000313655		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TAF2	chr8	120814034	-	DSCC1	chr8	120850647	-
intron-3CDS	ENST00000519355	ENST00000313655		TCGA	RV	LIHC	TCGA-BC-A10R-01A	TAF2	chr8	120814034	-	DSCC1	chr8	120850647	-
Frame-shit	ENST00000040877	ENST00000366610		TCGA	RV	LIHC	TCGA-DD-AADF-01A	TARBP1	chr1	234569156	-	IRF2BP2	chr1	234743598	-
Frame-shit	ENST00000040877	ENST00000366609		TCGA	RV	LIHC	TCGA-DD-AADF-01A	TARBP1	chr1	234569156	-	IRF2BP2	chr1	234743598	-
5CDS-5UTR	ENST00000040877	ENST00000491430		TCGA	RV	LIHC	TCGA-DD-AADF-01A	TARBP1	chr1	234569156	-	IRF2BP2	chr1	234743598	-
intron-3CDS	ENST00000483404	ENST00000366610		TCGA	RV	LIHC	TCGA-DD-AADF-01A	TARBP1	chr1	234569156	-	IRF2BP2	chr1	234743598	-
intron-3CDS	ENST00000483404	ENST00000366609		TCGA	RV	LIHC	TCGA-DD-AADF-01A	TARBP1	chr1	234569156	-	IRF2BP2	chr1	234743598	-
intron-5UTR	ENST00000483404	ENST00000491430		TCGA	RV	LIHC	TCGA-DD-AADF-01A	TARBP1	chr1	234569156	-	IRF2BP2	chr1	234743598	-
Frame-shit	ENST00000355528	ENST00000335255		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
5CDS-3UTR	ENST00000355528	ENST00000529652		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
Frame-shit	ENST00000397466	ENST00000335255		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
5CDS-3UTR	ENST00000397466	ENST00000529652		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
Frame-shit	ENST00000539345	ENST00000335255		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
5CDS-3UTR	ENST00000539345	ENST00000529652		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
intron-3CDS	ENST00000576691	ENST00000335255		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
intron-3UTR	ENST00000576691	ENST00000529652		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBCD	chr17	80861354	+	FOXK2	chr17	80559179	+
Frame-shit	ENST00000298552	ENST00000371872		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000298552	ENST00000439388		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000298552	ENST00000422262		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000298552	ENST00000371868		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000298552	ENST00000469828		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000298552	ENST00000371867		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000298552	ENST00000298628		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000545250	ENST00000371872		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000545250	ENST00000439388		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000545250	ENST00000422262		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000545250	ENST00000371868		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000545250	ENST00000469828		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000545250	ENST00000371867		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000545250	ENST00000298628		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000440111	ENST00000371872		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000440111	ENST00000439388		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000440111	ENST00000422262		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000440111	ENST00000371868		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000440111	ENST00000469828		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000440111	ENST00000371867		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000440111	ENST00000298628		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000403810	ENST00000371872		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000403810	ENST00000439388		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000403810	ENST00000422262		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000403810	ENST00000371868		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000403810	ENST00000469828		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000403810	ENST00000371867		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
5CDS-intron	ENST00000403810	ENST00000298628		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-3CDS	ENST00000475903	ENST00000371872		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-3CDS	ENST00000475903	ENST00000439388		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-3CDS	ENST00000475903	ENST00000422262		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-intron	ENST00000475903	ENST00000371868		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-intron	ENST00000475903	ENST00000469828		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-intron	ENST00000475903	ENST00000371867		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
intron-intron	ENST00000475903	ENST00000298628		TCGA	RV	LIHC	TCGA-GJ-A9DB-01A	TSC1	chr9	135796750	-	SARDH	chr9	136578246	-
Frame-shit	ENST00000304076	ENST00000366663		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000304076	ENST00000470540		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000304076	ENST00000427697		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000304076	ENST00000523410		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000602142	ENST00000366663		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000602142	ENST00000470540		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000602142	ENST00000427697		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000602142	ENST00000523410		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000596764	ENST00000366663		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000596764	ENST00000470540		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000596764	ENST00000427697		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000596764	ENST00000523410		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000539284	ENST00000366663		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000539284	ENST00000470540		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000539284	ENST00000427697		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000539284	ENST00000523410		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000599806	ENST00000366663		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000599806	ENST00000470540		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000599806	ENST00000427697		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000599806	ENST00000523410		TCGA	RV	LIHC	TCGA-DD-A11A-01A	VAV1	chr19	6843177	+	C1orf198	chr1	230975654	-
Frame-shit	ENST00000526986	ENST00000458008		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
In-frame	ENST00000526986	ENST00000427587		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
In-frame	ENST00000526986	ENST00000587133		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
Frame-shit	ENST00000310442	ENST00000458008		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
Frame-shit	ENST00000310442	ENST00000427587		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
Frame-shit	ENST00000310442	ENST00000587133		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
5UTR-3CDS	ENST00000525925	ENST00000458008		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
5UTR-3CDS	ENST00000525925	ENST00000427587		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
5UTR-3CDS	ENST00000525925	ENST00000587133		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	ZDHHC24	chr11	66311175	-	FAM86A	chr16	5135733	-
Frame-shit	ENST00000287218	ENST00000372389		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
Frame-shit	ENST00000287218	ENST00000372344		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
Frame-shit	ENST00000287218	ENST00000304004		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
Frame-shit	ENST00000373391	ENST00000372389		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
Frame-shit	ENST00000373391	ENST00000372344		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
Frame-shit	ENST00000373391	ENST00000304004		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
intron-3CDS	ENST00000463847	ENST00000372389		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
intron-3CDS	ENST00000463847	ENST00000372344		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
intron-3CDS	ENST00000463847	ENST00000304004		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ZFAND3	chr6	37897775	+	POLR1C	chr6	43485044	+
intron-5UTR	ENST00000466398	ENST00000410053		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000466398	ENST00000295749		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
5UTR-5UTR	ENST00000410066	ENST00000410053		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
5UTR-5UTR	ENST00000410066	ENST00000295749		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000336917	ENST00000410053		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000336917	ENST00000295749		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000409343	ENST00000410053		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000409343	ENST00000295749		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000409692	ENST00000410053		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000409692	ENST00000295749		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	ZNF385B	chr2	180725828	-	CWC22	chr2	180858181	-
intron-5UTR	ENST00000374079	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000374079	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000374079	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000374079	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000374079	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-5UTR	ENST00000307564	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000307564	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000307564	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000307564	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000307564	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-5UTR	ENST00000374088	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374088	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374088	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374088	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374088	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-5UTR	ENST00000492875	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000492875	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000492875	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000492875	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
intron-intron	ENST00000492875	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-5UTR	ENST00000223791	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000223791	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000223791	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000223791	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000223791	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-5UTR	ENST00000374075	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374075	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374075	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374075	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000374075	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-5UTR	ENST00000312033	ENST00000265134		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000312033	ENST00000374059		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000312033	ENST00000362057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000312033	ENST00000374057		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5CDS-intron	ENST00000312033	ENST00000480518		TCGA	RV	LIHC	TCGA-DD-A115-01A	AKNA	chr9	117129823	-	DFNB31	chr9	117188693	-
5UTR-3CDS	ENST00000265742	ENST00000356239		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
5UTR-3CDS	ENST00000265742	ENST00000358100		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
5UTR-3CDS	ENST00000265742	ENST00000359028		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
5UTR-intron	ENST00000265742	ENST00000394564		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
5UTR-intron	ENST00000265742	ENST00000491695		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
intron-3CDS	ENST00000486698	ENST00000356239		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
intron-3CDS	ENST00000486698	ENST00000358100		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
intron-3CDS	ENST00000486698	ENST00000359028		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
intron-intron	ENST00000486698	ENST00000394564		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
intron-intron	ENST00000486698	ENST00000491695		TCGA	RV	LIHC	TCGA-DD-A11A-01A	ANKIB1	chr7	91875833	+	AKAP9	chr7	91739436	+
Frame-shit	ENST00000289968	ENST00000321437		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
Frame-shit	ENST00000289968	ENST00000448330		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
Frame-shit	ENST00000441763	ENST00000321437		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
Frame-shit	ENST00000441763	ENST00000448330		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
Frame-shit	ENST00000303665	ENST00000321437		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
Frame-shit	ENST00000303665	ENST00000448330		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
5UTR-3CDS	ENST00000575975	ENST00000321437		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
5UTR-3CDS	ENST00000575975	ENST00000448330		TCGA	RV	LIHC	TCGA-BC-A10R-01A	ARHGAP17	chr16	25026530	-	RAB8B	chr15	63536955	+
In-frame	ENST00000569600	ENST00000262493		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
In-frame	ENST00000569600	ENST00000262494		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
5CDS-intron	ENST00000569600	ENST00000569295		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
In-frame	ENST00000219139	ENST00000262493		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
In-frame	ENST00000219139	ENST00000262494		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
5CDS-intron	ENST00000219139	ENST00000569295		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
3UTR-3CDS	ENST00000569683	ENST00000262493		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
3UTR-3CDS	ENST00000569683	ENST00000262494		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
3UTR-intron	ENST00000569683	ENST00000569295		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	C16orf70	chr16	67159945	+	GNAO1	chr16	56362543	+
intron-3CDS	ENST00000361183	ENST00000265724		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000361183	ENST00000543898		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-intron	ENST00000361183	ENST00000488737		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000458284	ENST00000265724		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000458284	ENST00000543898		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-intron	ENST00000458284	ENST00000488737		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000490693	ENST00000265724		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000490693	ENST00000543898		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-intron	ENST00000490693	ENST00000488737		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000466023	ENST00000265724		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-3CDS	ENST00000466023	ENST00000543898		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
intron-intron	ENST00000466023	ENST00000488737		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CAPZA2	chr7	116451156	+	ABCB1	chr7	87168661	-
Frame-shit	ENST00000370418	ENST00000369905		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	CPN1	chr10	101823371	-	ACTR1A	chr10	104245490	-
5CDS-intron	ENST00000370418	ENST00000470322		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	CPN1	chr10	101823371	-	ACTR1A	chr10	104245490	-
5CDS-intron	ENST00000370418	ENST00000487599		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	CPN1	chr10	101823371	-	ACTR1A	chr10	104245490	-
5CDS-intron	ENST00000370418	ENST00000545684		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	CPN1	chr10	101823371	-	ACTR1A	chr10	104245490	-
5CDS-intron	ENST00000370418	ENST00000446605		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	CPN1	chr10	101823371	-	ACTR1A	chr10	104245490	-
Frame-shit	ENST00000309117	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5CDS-intron	ENST00000309117	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5UTR-3CDS	ENST00000399000	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5UTR-intron	ENST00000399000	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5UTR-3CDS	ENST00000288304	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5UTR-intron	ENST00000288304	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
Frame-shit	ENST00000539844	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5CDS-intron	ENST00000539844	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
Frame-shit	ENST00000399001	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5CDS-intron	ENST00000399001	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
Frame-shit	ENST00000476950	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5CDS-intron	ENST00000476950	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
Frame-shit	ENST00000398998	ENST00000220166		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5CDS-intron	ENST00000398998	ENST00000534533		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	DSCR3	chr21	38639539	-	CTSH	chr15	79231513	-
5CDS-5UTR	ENST00000421834	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000421834	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000421834	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000421834	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000421834	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000421834	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000421834	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370769	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370769	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000370769	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370769	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370769	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370769	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000370769	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000312431	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000312431	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-intron	ENST00000312431	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000312431	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000312431	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000312431	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
3UTR-intron	ENST00000312431	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370754	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370754	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000370754	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370754	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370754	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370754	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000370754	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370788	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370788	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000370788	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370788	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370788	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000370788	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000370788	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000361203	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000361203	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000361203	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000361203	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000361203	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000361203	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000361203	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000244364	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000244364	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000244364	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000244364	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000244364	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000244364	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000244364	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000446842	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000446842	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000446842	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000446842	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000446842	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000446842	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5CDS-intron	ENST00000446842	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-5UTR	ENST00000340834	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-5UTR	ENST00000340834	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-intron	ENST00000340834	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-5UTR	ENST00000340834	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-5UTR	ENST00000340834	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-5UTR	ENST00000340834	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-intron	ENST00000340834	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000370765	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000370765	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-intron	ENST00000370765	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000370765	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000370765	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000370765	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-intron	ENST00000370765	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000518935	ENST00000503581		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000518935	ENST00000370621		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-intron	ENST00000518935	ENST00000370616		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000518935	ENST00000393380		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000518935	ENST00000342421		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-5UTR	ENST00000518935	ENST00000370618		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
intron-intron	ENST00000518935	ENST00000486069		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	DST	chr6	56391159	-	EYS	chr6	66205886	-
5UTR-3CDS	ENST00000330386	ENST00000367975		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000330386	ENST00000342751		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000330386	ENST00000432287		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000330386	ENST00000392169		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000330386	ENST00000513009		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000330386	ENST00000470743		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000389561	ENST00000367975		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000389561	ENST00000342751		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000389561	ENST00000432287		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000389561	ENST00000392169		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000389561	ENST00000513009		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000389561	ENST00000470743		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000333577	ENST00000367975		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000333577	ENST00000342751		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000333577	ENST00000432287		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000333577	ENST00000392169		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000333577	ENST00000513009		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000333577	ENST00000470743		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000332482	ENST00000367975		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000332482	ENST00000342751		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000332482	ENST00000432287		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000332482	ENST00000392169		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000332482	ENST00000513009		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000332482	ENST00000470743		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000389562	ENST00000367975		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000389562	ENST00000342751		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-3CDS	ENST00000389562	ENST00000432287		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000389562	ENST00000392169		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000389562	ENST00000513009		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
5UTR-intron	ENST00000389562	ENST00000470743		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	EP400	chr12	132434581	+	SDHC	chr1	161293404	+
Frame-shit	ENST00000263734	ENST00000401021		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	EPAS1	chr2	46525076	+	SYPL2	chr1	110009681	+
Frame-shit	ENST00000263734	ENST00000369872		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	EPAS1	chr2	46525076	+	SYPL2	chr1	110009681	+
5CDS-intron	ENST00000263734	ENST00000475497		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	EPAS1	chr2	46525076	+	SYPL2	chr1	110009681	+
3UTR-3CDS	ENST00000467888	ENST00000401021		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	EPAS1	chr2	46525076	+	SYPL2	chr1	110009681	+
3UTR-3CDS	ENST00000467888	ENST00000369872		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	EPAS1	chr2	46525076	+	SYPL2	chr1	110009681	+
3UTR-intron	ENST00000467888	ENST00000475497		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	EPAS1	chr2	46525076	+	SYPL2	chr1	110009681	+
In-frame	ENST00000221233	ENST00000221347		TCGA	RV	LIHC	TCGA-DD-AADC-01A	EXOSC5	chr19	41893419	-	FCGBP	chr19	40354532	-
5CDS-intron	ENST00000221233	ENST00000595713		TCGA	RV	LIHC	TCGA-DD-AADC-01A	EXOSC5	chr19	41893419	-	FCGBP	chr19	40354532	-
In-frame	ENST00000596905	ENST00000221347		TCGA	RV	LIHC	TCGA-DD-AADC-01A	EXOSC5	chr19	41893419	-	FCGBP	chr19	40354532	-
5CDS-intron	ENST00000596905	ENST00000595713		TCGA	RV	LIHC	TCGA-DD-AADC-01A	EXOSC5	chr19	41893419	-	FCGBP	chr19	40354532	-
In-frame	ENST00000381971	ENST00000388712		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
In-frame	ENST00000381971	ENST00000388711		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
5CDS-5UTR	ENST00000381971	ENST00000257504		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-3CDS	ENST00000324333	ENST00000388712		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-3CDS	ENST00000324333	ENST00000388711		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-5UTR	ENST00000324333	ENST00000257504		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-3CDS	ENST00000461870	ENST00000388712		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-3CDS	ENST00000461870	ENST00000388711		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-5UTR	ENST00000461870	ENST00000257504		TCGA	RV	LIHC	TCGA-UB-A7MB-01A	GLIS3	chr9	4286038	-	GOLM1	chr9	88661487	-
intron-intron	ENST00000331872	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000331872	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000331872	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000331872	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000331872	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000331872	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000417584	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000417584	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000417584	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000417584	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000417584	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000417584	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000311223	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000311223	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000311223	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000311223	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000311223	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
intron-intron	ENST00000311223	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000491322	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000491322	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000491322	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000491322	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000491322	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000491322	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000339526	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000339526	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000339526	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000339526	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000339526	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000339526	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-AAEE-01A	GLUL	chr1	182352029	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000377047	ENST00000377067		TCGA	RV	LIHC	TCGA-MI-A75E-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	LIHC	TCGA-MI-A75E-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000230173	ENST00000367630		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000230173	ENST00000367621		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000230173	ENST00000452973		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
5CDS-3UTR	ENST00000230173	ENST00000491881		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000367608	ENST00000367630		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000367608	ENST00000367621		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000367608	ENST00000452973		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
5CDS-3UTR	ENST00000367608	ENST00000491881		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000296932	ENST00000367630		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000296932	ENST00000367621		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000296932	ENST00000452973		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
5CDS-3UTR	ENST00000296932	ENST00000491881		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000367609	ENST00000367630		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000367609	ENST00000367621		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
Frame-shit	ENST00000367609	ENST00000452973		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
5CDS-3UTR	ENST00000367609	ENST00000491881		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
intron-3CDS	ENST00000545477	ENST00000367630		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
intron-3CDS	ENST00000545477	ENST00000367621		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
intron-3CDS	ENST00000545477	ENST00000452973		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
intron-3UTR	ENST00000545477	ENST00000491881		TCGA	RV	LIHC	TCGA-DD-AAW3-01A	GPR126	chr6	142731056	+	VTA1	chr6	142510563	+
5CDS-5UTR	ENST00000216044	ENST00000249014		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	GTPBP1	chr22	39102152	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000460605	ENST00000249014		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	GTPBP1	chr22	39102152	+	CDC42EP1	chr22	37962079	+
In-frame	ENST00000534064	ENST00000353172		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000534064	ENST00000533144		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000535943	ENST00000353172		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000535943	ENST00000533144		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000525931	ENST00000353172		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
intron-3CDS	ENST00000525931	ENST00000533144		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
In-frame	ENST00000529807	ENST00000353172		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000529807	ENST00000533144		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
In-frame	ENST00000527522	ENST00000353172		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
Frame-shit	ENST00000527522	ENST00000533144		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	INTS4	chr11	77702154	-	KCTD14	chr11	77728316	-
5UTR-3CDS	ENST00000321599	ENST00000296473		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000321599	ENST00000455683		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000321599	ENST00000417270		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000321599	ENST00000483022		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395238	ENST00000296473		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395238	ENST00000455683		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395238	ENST00000417270		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000395238	ENST00000483022		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000468463	ENST00000296473		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000468463	ENST00000455683		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000468463	ENST00000417270		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000468463	ENST00000483022		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000460540	ENST00000296473		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000460540	ENST00000455683		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000460540	ENST00000417270		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000460540	ENST00000483022		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000498149	ENST00000296473		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000498149	ENST00000455683		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000498149	ENST00000417270		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000498149	ENST00000483022		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	IP6K1	chr3	49823787	-	MON1A	chr3	49950792	-
In-frame	ENST00000398645	ENST00000346672		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
In-frame	ENST00000398645	ENST00000360962		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000398645	ENST00000527634		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000398645	ENST00000540737		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000398645	ENST00000532565		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000398645	ENST00000525449		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-3UTR	ENST00000398645	ENST00000527368		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
In-frame	ENST00000529006	ENST00000346672		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
In-frame	ENST00000529006	ENST00000360962		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000529006	ENST00000527634		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000529006	ENST00000540737		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000529006	ENST00000532565		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-5UTR	ENST00000529006	ENST00000525449		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
5CDS-3UTR	ENST00000529006	ENST00000527368		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000526258	ENST00000346672		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000526258	ENST00000360962		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000526258	ENST00000527634		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000526258	ENST00000540737		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000526258	ENST00000532565		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000526258	ENST00000525449		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3UTR	ENST00000526258	ENST00000527368		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000308783	ENST00000346672		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000308783	ENST00000360962		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000308783	ENST00000527634		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000308783	ENST00000540737		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000308783	ENST00000532565		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000308783	ENST00000525449		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3UTR	ENST00000308783	ENST00000527368		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000530342	ENST00000346672		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3CDS	ENST00000530342	ENST00000360962		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000530342	ENST00000527634		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000530342	ENST00000540737		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000530342	ENST00000532565		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-5UTR	ENST00000530342	ENST00000525449		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
intron-3UTR	ENST00000530342	ENST00000527368		TCGA	RV	LIHC	TCGA-BC-A112-01A	KDM2A	chr11	66949363	+	C11orf80	chr11	66526514	+
Frame-shit	ENST00000559279	ENST00000249636		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000559279	ENST00000545237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
5CDS-intron	ENST00000559279	ENST00000567417		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000395392	ENST00000249636		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000395392	ENST00000545237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
5CDS-intron	ENST00000395392	ENST00000567417		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000352331	ENST00000249636		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000352331	ENST00000545237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
5CDS-intron	ENST00000352331	ENST00000567417		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000260363	ENST00000249636		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000260363	ENST00000545237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
5CDS-intron	ENST00000260363	ENST00000567417		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000558585	ENST00000249636		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000558585	ENST00000545237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
5CDS-intron	ENST00000558585	ENST00000567417		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000537891	ENST00000249636		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000537891	ENST00000545237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
5CDS-intron	ENST00000537891	ENST00000567417		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KIF23	chr15	69721552	+	PIAS1	chr15	68479880	+
3UTR-3CDS	ENST00000463441	ENST00000428084		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
3UTR-intron	ENST00000463441	ENST00000494651		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
3UTR-intron	ENST00000463441	ENST00000437633		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
3UTR-5UTR	ENST00000463441	ENST00000476846		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
intron-3CDS	ENST00000323078	ENST00000428084		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
intron-intron	ENST00000323078	ENST00000494651		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
intron-intron	ENST00000323078	ENST00000437633		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
intron-5UTR	ENST00000323078	ENST00000476846		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-3CDS	ENST00000359623	ENST00000428084		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-intron	ENST00000359623	ENST00000494651		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-intron	ENST00000359623	ENST00000437633		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-5UTR	ENST00000359623	ENST00000476846		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-3CDS	ENST00000493307	ENST00000428084		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-intron	ENST00000493307	ENST00000494651		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-intron	ENST00000493307	ENST00000437633		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
5UTR-5UTR	ENST00000493307	ENST00000476846		TCGA	RV	LIHC	TCGA-NI-A8LF-01A	LRRC61	chr7	150023099	+	DOCK4	chr7	111629218	-
In-frame	ENST00000446044	ENST00000434410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000446044	ENST00000232854		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000446044	ENST00000455834		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000497283	ENST00000434410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000497283	ENST00000232854		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000497283	ENST00000455834		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000357955	ENST00000434410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000357955	ENST00000232854		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000357955	ENST00000455834		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000306010	ENST00000280333		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MGMT	chr10	131334641	+	DOCK1	chr10	129237291	+
5CDS-intron	ENST00000306010	ENST00000484400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MGMT	chr10	131334641	+	DOCK1	chr10	129237291	+
intron-3CDS	ENST00000462672	ENST00000280333		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MGMT	chr10	131334641	+	DOCK1	chr10	129237291	+
intron-intron	ENST00000462672	ENST00000484400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MGMT	chr10	131334641	+	DOCK1	chr10	129237291	+
In-frame	ENST00000360772	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
In-frame	ENST00000360772	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-intron	ENST00000360772	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
Frame-shit	ENST00000359169	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
Frame-shit	ENST00000359169	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-intron	ENST00000359169	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
Frame-shit	ENST00000360304	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
Frame-shit	ENST00000360304	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-intron	ENST00000360304	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000418370	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000418370	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-intron	ENST00000418370	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000578202	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000578202	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-intron	ENST00000578202	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
In-frame	ENST00000354792	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
In-frame	ENST00000354792	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-intron	ENST00000354792	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
Frame-shit	ENST00000346322	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
Frame-shit	ENST00000346322	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-intron	ENST00000346322	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000583087	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000583087	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-intron	ENST00000583087	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
In-frame	ENST00000475616	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
In-frame	ENST00000475616	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-intron	ENST00000475616	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000510775	ENST00000324093		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-3CDS	ENST00000510775	ENST00000393239		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
intron-intron	ENST00000510775	ENST00000504689		TCGA	RV	LIHC	TCGA-FV-A496-01A	MYLK	chr3	123345665	-	PLXND1	chr3	129297276	-
5CDS-5UTR	ENST00000319023	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000319023	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000319023	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
5CDS-intron	ENST00000319023	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
5CDS-intron	ENST00000319023	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000539574	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000539574	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000539574	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-intron	ENST00000539574	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-intron	ENST00000539574	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000530055	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000530055	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000530055	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-intron	ENST00000530055	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-intron	ENST00000530055	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000526039	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000526039	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-5UTR	ENST00000526039	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-intron	ENST00000526039	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
intron-intron	ENST00000526039	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NADSYN1	chr11	71169590	+	PAK1	chr11	77103586	-
In-frame	ENST00000367661	ENST00000367657		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367661	ENST00000361833		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367661	ENST00000367654		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367661	ENST00000424564		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
5CDS-intron	ENST00000367661	ENST00000281881		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367662	ENST00000367657		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367662	ENST00000361833		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367662	ENST00000367654		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000367662	ENST00000424564		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
5CDS-intron	ENST00000367662	ENST00000281881		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
intron-3CDS	ENST00000486075	ENST00000367657		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
intron-3CDS	ENST00000486075	ENST00000361833		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
intron-3CDS	ENST00000486075	ENST00000367654		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
intron-3CDS	ENST00000486075	ENST00000424564		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
intron-intron	ENST00000486075	ENST00000281881		TCGA	RV	LIHC	TCGA-BC-A217-01A	PAPPA2	chr1	176640251	+	ASTN1	chr1	176863966	-
In-frame	ENST00000555577	ENST00000370664		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PI4K2A	chr10	99344671	+	UBTD1	chr10	99329895	+
In-frame	ENST00000370649	ENST00000370664		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PI4K2A	chr10	99344671	+	UBTD1	chr10	99329895	+
intron-3CDS	ENST00000370631	ENST00000370664		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PI4K2A	chr10	99344671	+	UBTD1	chr10	99329895	+
Frame-shit	ENST00000339364	ENST00000370626		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PIK3AP1	chr10	98408416	-	AVPI1	chr10	99437782	-
5UTR-3CDS	ENST00000468783	ENST00000370626		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PIK3AP1	chr10	98408416	-	AVPI1	chr10	99437782	-
In-frame	ENST00000371110	ENST00000370626		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PIK3AP1	chr10	98408416	-	AVPI1	chr10	99437782	-
intron-3CDS	ENST00000371109	ENST00000370626		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PIK3AP1	chr10	98408416	-	AVPI1	chr10	99437782	-
Frame-shit	ENST00000395443	ENST00000351842		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
Frame-shit	ENST00000395443	ENST00000265560		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-5UTR	ENST00000395443	ENST00000488520		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-intron	ENST00000395443	ENST00000416417		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-intron	ENST00000395443	ENST00000415188		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
Frame-shit	ENST00000357496	ENST00000351842		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
Frame-shit	ENST00000357496	ENST00000265560		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-5UTR	ENST00000357496	ENST00000488520		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-intron	ENST00000357496	ENST00000416417		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-intron	ENST00000357496	ENST00000415188		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
Frame-shit	ENST00000424300	ENST00000351842		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
Frame-shit	ENST00000424300	ENST00000265560		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-5UTR	ENST00000424300	ENST00000488520		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-intron	ENST00000424300	ENST00000416417		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
5CDS-intron	ENST00000424300	ENST00000415188		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
intron-3CDS	ENST00000479449	ENST00000351842		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
intron-3CDS	ENST00000479449	ENST00000265560		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
intron-5UTR	ENST00000479449	ENST00000488520		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
intron-intron	ENST00000479449	ENST00000416417		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
intron-intron	ENST00000479449	ENST00000415188		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	QRICH1	chr3	49114142	-	USP4	chr3	49343321	-
In-frame	ENST00000571995	ENST00000007699		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
5CDS-5UTR	ENST00000571995	ENST00000570627		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
intron-3CDS	ENST00000571880	ENST00000007699		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
intron-5UTR	ENST00000571880	ENST00000570627		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
5UTR-3CDS	ENST00000269347	ENST00000007699		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
5UTR-5UTR	ENST00000269347	ENST00000570627		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
In-frame	ENST00000538809	ENST00000007699		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
5CDS-5UTR	ENST00000538809	ENST00000570627		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	RAB40B	chr17	80656331	-	YBX2	chr17	7193854	-
5UTR-3CDS	ENST00000337907	ENST00000377424		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-3CDS	ENST00000337907	ENST00000536305		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-5UTR	ENST00000337907	ENST00000535586		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-5UTR	ENST00000337907	ENST00000377414		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000377464	ENST00000377424		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000377464	ENST00000536305		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000377464	ENST00000535586		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000377464	ENST00000377414		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000400907	ENST00000377424		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000400907	ENST00000536305		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000400907	ENST00000535586		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000400907	ENST00000377414		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-3CDS	ENST00000400908	ENST00000377424		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-3CDS	ENST00000400908	ENST00000536305		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-5UTR	ENST00000400908	ENST00000535586		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
5UTR-5UTR	ENST00000400908	ENST00000377414		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000476556	ENST00000377424		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000476556	ENST00000536305		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000476556	ENST00000535586		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000476556	ENST00000377414		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000460659	ENST00000377424		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-3CDS	ENST00000460659	ENST00000536305		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000460659	ENST00000535586		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
intron-5UTR	ENST00000460659	ENST00000377414		TCGA	RV	LIHC	TCGA-DD-A73F-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9107793	-
Frame-shit	ENST00000372771	ENST00000331238		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RLF	chr1	40627308	+	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000382363	ENST00000415957		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
intron-5UTR	ENST00000382363	ENST00000403066		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
intron-5UTR	ENST00000382363	ENST00000215812		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
intron-5UTR	ENST00000382363	ENST00000540910		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
intron-5UTR	ENST00000382363	ENST00000401751		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
intron-5UTR	ENST00000382363	ENST00000402286		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
intron-5UTR	ENST00000382363	ENST00000539629		TCGA	RV	LIHC	TCGA-BC-A216-01A	RNF215	chr22	30817650	-	SEC14L3	chr22	30866569	-
5CDS-5UTR	ENST00000339556	ENST00000368373		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000339556	ENST00000327247		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000339556	ENST00000427500		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000339556	ENST00000536770		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000339556	ENST00000428024		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000339556	ENST00000493842		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392622	ENST00000368373		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392622	ENST00000327247		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392622	ENST00000427500		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392622	ENST00000536770		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000392622	ENST00000428024		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392622	ENST00000493842		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392623	ENST00000368373		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392623	ENST00000327247		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392623	ENST00000427500		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392623	ENST00000536770		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000392623	ENST00000428024		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000392623	ENST00000493842		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000440685	ENST00000368373		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000440685	ENST00000327247		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000440685	ENST00000427500		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000440685	ENST00000536770		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000440685	ENST00000428024		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000440685	ENST00000493842		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368699	ENST00000368373		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368699	ENST00000327247		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368699	ENST00000427500		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368699	ENST00000536770		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-intron	ENST00000368699	ENST00000428024		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5CDS-5UTR	ENST00000368699	ENST00000493842		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000491177	ENST00000368373		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000491177	ENST00000327247		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000491177	ENST00000427500		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000491177	ENST00000536770		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5UTR-intron	ENST00000491177	ENST00000428024		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
5UTR-5UTR	ENST00000491177	ENST00000493842		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	S100A13	chr1	153598796	-	GBA	chr1	155210971	-
intron-3CDS	ENST00000440909	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000440909	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000440909	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000440909	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000448921	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000448921	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000448921	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000448921	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000437397	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000437397	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000437397	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000437397	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000355814	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000355814	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000355814	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000355814	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000393087	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000393087	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000393087	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000393087	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
Frame-shit	ENST00000393088	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
Frame-shit	ENST00000393088	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
5CDS-5UTR	ENST00000393088	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
5CDS-5UTR	ENST00000393088	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000404814	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000404814	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000404814	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000404814	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000449399	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000449399	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000449399	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000449399	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000402629	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000402629	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000402629	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000402629	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000555289	ENST00000392129		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-3CDS	ENST00000555289	ENST00000367881		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000555289	ENST00000580248		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
intron-5UTR	ENST00000555289	ENST00000464650		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94844713	-	TMCO1	chr1	165728821	-
In-frame	ENST00000264930	ENST00000320895		TCGA	RV	LIHC	TCGA-BC-A10R-01A	SLC12A7	chr5	1073748	-	CLPTM1L	chr5	1331998	-
In-frame	ENST00000264930	ENST00000507807		TCGA	RV	LIHC	TCGA-BC-A10R-01A	SLC12A7	chr5	1073748	-	CLPTM1L	chr5	1331998	-
In-frame	ENST00000264930	ENST00000320927		TCGA	RV	LIHC	TCGA-BC-A10R-01A	SLC12A7	chr5	1073748	-	CLPTM1L	chr5	1331998	-
5CDS-intron	ENST00000264930	ENST00000506641		TCGA	RV	LIHC	TCGA-BC-A10R-01A	SLC12A7	chr5	1073748	-	CLPTM1L	chr5	1331998	-
Frame-shit	ENST00000275300	ENST00000356079		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC22A3	chr6	160864774	+	CYP20A1	chr2	204110569	+
5CDS-intron	ENST00000275300	ENST00000461371		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC22A3	chr6	160864774	+	CYP20A1	chr2	204110569	+
5CDS-intron	ENST00000275300	ENST00000429815		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC22A3	chr6	160864774	+	CYP20A1	chr2	204110569	+
Frame-shit	ENST00000392145	ENST00000356079		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC22A3	chr6	160864774	+	CYP20A1	chr2	204110569	+
5CDS-intron	ENST00000392145	ENST00000461371		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC22A3	chr6	160864774	+	CYP20A1	chr2	204110569	+
5CDS-intron	ENST00000392145	ENST00000429815		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC22A3	chr6	160864774	+	CYP20A1	chr2	204110569	+
Frame-shit	ENST00000375759	ENST00000375771		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
Frame-shit	ENST00000375759	ENST00000375766		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
Frame-shit	ENST00000375759	ENST00000400773		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
Frame-shit	ENST00000375759	ENST00000441801		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
Frame-shit	ENST00000375759	ENST00000332305		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
5CDS-intron	ENST00000375759	ENST00000509138		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
intron-3CDS	ENST00000471538	ENST00000375771		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
intron-3CDS	ENST00000471538	ENST00000375766		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
intron-3CDS	ENST00000471538	ENST00000400773		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
intron-3CDS	ENST00000471538	ENST00000441801		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
intron-3CDS	ENST00000471538	ENST00000332305		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
intron-intron	ENST00000471538	ENST00000509138		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	SPEN	chr1	16174645	+	FBLIM1	chr1	16096904	+
In-frame	ENST00000393446	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393446	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393446	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000393446	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000393446	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000265437	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000265437	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000265437	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000265437	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000265437	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393451	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393451	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393451	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000393451	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000393451	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393449	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393449	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393449	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000393449	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000393449	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000323984	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000323984	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000323984	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000323984	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000323984	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000432298	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000432298	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000432298	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000432298	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000432298	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000422922	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000422922	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000422922	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000422922	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000422922	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
Frame-shit	ENST00000487459	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
Frame-shit	ENST00000487459	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
Frame-shit	ENST00000487459	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000487459	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000487459	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393443	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393443	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393443	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000393443	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000393443	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393447	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393447	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393447	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000393447	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000393447	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393444	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393444	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
In-frame	ENST00000393444	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-3UTR	ENST00000393444	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
5CDS-intron	ENST00000393444	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
intron-3CDS	ENST00000465133	ENST00000397752		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
intron-3CDS	ENST00000465133	ENST00000318493		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
intron-3CDS	ENST00000465133	ENST00000436117		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
intron-3UTR	ENST00000465133	ENST00000495962		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
intron-intron	ENST00000465133	ENST00000539704		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ST7	chr7	116830990	+	MET	chr7	116371722	+
Frame-shit	ENST00000359930	ENST00000371440		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000359930	ENST00000371435		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000359930	ENST00000395961		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-intron	ENST00000359930	ENST00000434986		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-5UTR	ENST00000359930	ENST00000411563		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000484875	ENST00000371440		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000484875	ENST00000371435		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000484875	ENST00000395961		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-intron	ENST00000484875	ENST00000434986		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-5UTR	ENST00000484875	ENST00000411563		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000361612	ENST00000371440		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000361612	ENST00000371435		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000361612	ENST00000395961		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-intron	ENST00000361612	ENST00000434986		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-5UTR	ENST00000361612	ENST00000411563		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000467815	ENST00000371440		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000467815	ENST00000371435		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
Frame-shit	ENST00000467815	ENST00000395961		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-intron	ENST00000467815	ENST00000434986		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
5CDS-5UTR	ENST00000467815	ENST00000411563		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000478766	ENST00000371440		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000478766	ENST00000371435		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
intron-3CDS	ENST00000478766	ENST00000395961		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
intron-intron	ENST00000478766	ENST00000434986		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
intron-5UTR	ENST00000478766	ENST00000411563		TCGA	RV	LIHC	TCGA-CC-A8HS-01A	SULF2	chr20	46305238	-	BCAS1	chr20	52645511	-
In-frame	ENST00000424789	ENST00000303375		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TANC2	chr17	61086987	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000424789	ENST00000446119		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TANC2	chr17	61086987	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000424789	ENST00000580916		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TANC2	chr17	61086987	+	MRC2	chr17	60741909	+
In-frame	ENST00000389520	ENST00000303375		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TANC2	chr17	61086987	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000389520	ENST00000446119		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TANC2	chr17	61086987	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000389520	ENST00000580916		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TANC2	chr17	61086987	+	MRC2	chr17	60741909	+
Frame-shit	ENST00000322244	ENST00000274026		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	UBA6	chr4	68566767	-	CCNA2	chr4	122742246	-
Frame-shit	ENST00000420827	ENST00000274026		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	UBA6	chr4	68566767	-	CCNA2	chr4	122742246	-
5CDS-5UTR	ENST00000403766	ENST00000175506		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
5CDS-5UTR	ENST00000403766	ENST00000394309		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
5CDS-intron	ENST00000403766	ENST00000437628		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
5CDS-5UTR	ENST00000403766	ENST00000394308		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
5CDS-intron	ENST00000403766	ENST00000422745		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
5CDS-intron	ENST00000403766	ENST00000455086		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
5CDS-5UTR	ENST00000403766	ENST00000444334		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000376440	ENST00000175506		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000376440	ENST00000394309		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-intron	ENST00000376440	ENST00000437628		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000376440	ENST00000394308		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-intron	ENST00000376440	ENST00000422745		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-intron	ENST00000376440	ENST00000455086		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000376440	ENST00000444334		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000460562	ENST00000175506		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000460562	ENST00000394309		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-intron	ENST00000460562	ENST00000437628		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000460562	ENST00000394308		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-intron	ENST00000460562	ENST00000422745		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-intron	ENST00000460562	ENST00000455086		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
intron-5UTR	ENST00000460562	ENST00000444334		TCGA	RV	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97499125	-
Frame-shit	ENST00000482026	ENST00000404648		TCGA	RV	LIHC	TCGA-DD-A4NP-01A	UGT1A3	chr2	234681945	+	FGG	chr4	155534001	-
5CDS-intron	ENST00000482026	ENST00000405164		TCGA	RV	LIHC	TCGA-DD-A4NP-01A	UGT1A3	chr2	234681945	+	FGG	chr4	155534001	-
5CDS-intron	ENST00000482026	ENST00000336098		TCGA	RV	LIHC	TCGA-DD-A4NP-01A	UGT1A3	chr2	234681945	+	FGG	chr4	155534001	-
5CDS-intron	ENST00000482026	ENST00000407946		TCGA	RV	LIHC	TCGA-DD-A4NP-01A	UGT1A3	chr2	234681945	+	FGG	chr4	155534001	-
5CDS-intron	ENST00000232607	ENST00000477496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000460856		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000240874		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000360013		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000393496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000291478		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000428018		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000459915		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000232607	ENST00000462213		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000477496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000460856		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000240874		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000360013		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000393496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000291478		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000428018		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000459915		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000413078	ENST00000462213		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000477496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000460856		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000240874		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000360013		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000393496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000291478		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000428018		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000459915		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000538242	ENST00000462213		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000477496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000460856		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000240874		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000360013		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000393496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000291478		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000428018		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000459915		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5UTR-intron	ENST00000536109	ENST00000462213		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000477496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000460856		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000240874		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000360013		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000393496		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000291478		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000428018		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000459915		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
intron-intron	ENST00000498715	ENST00000462213		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	UMPS	chr3	124449474	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400911	ENST00000544484		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000400911	ENST00000357008		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000400911	ENST00000309577		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000400911	ENST00000544040		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000400911	ENST00000540960		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
intron-intron	ENST00000361716	ENST00000544484		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
intron-intron	ENST00000361716	ENST00000357008		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
intron-intron	ENST00000361716	ENST00000309577		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
intron-intron	ENST00000361716	ENST00000544040		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
intron-intron	ENST00000361716	ENST00000540960		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5UTR-intron	ENST00000544432	ENST00000544484		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5UTR-intron	ENST00000544432	ENST00000357008		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5UTR-intron	ENST00000544432	ENST00000309577		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5UTR-intron	ENST00000544432	ENST00000544040		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5UTR-intron	ENST00000544432	ENST00000540960		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000535180	ENST00000544484		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000535180	ENST00000357008		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000535180	ENST00000309577		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000535180	ENST00000544040		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000535180	ENST00000540960		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000396308	ENST00000544484		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000396308	ENST00000357008		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000396308	ENST00000309577		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000396308	ENST00000544040		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
5CDS-intron	ENST00000396308	ENST00000540960		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	VAMP1	chr12	6574056	-	CHD4	chr12	6711663	-
Frame-shit	ENST00000298139	ENST00000519301		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000520407		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000523079		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000338921		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000356819		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000287845		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000341377		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000287842		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000521670		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000405005		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000520502		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
Frame-shit	ENST00000298139	ENST00000539990		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
5CDS-intron	ENST00000298139	ENST00000523681		TCGA	RV	LIHC	TCGA-DD-AAD0-01A	WRN	chr8	31024746	+	NRG1	chr8	32585467	+
intron-intron	ENST00000318560	ENST00000467100		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ABL1	chr9	133589842	+	FUBP3	chr9	133493184	+
intron-intron	ENST00000318560	ENST00000319725		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	ABL1	chr9	133589842	+	FUBP3	chr9	133493184	+
3UTR-3CDS	ENST00000295897	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000295897	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000415165	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000415165	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000503124	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-intron	ENST00000503124	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000509063	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-intron	ENST00000509063	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000401494	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-intron	ENST00000401494	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000505649	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
intron-intron	ENST00000505649	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	ALB	chr4	74286971	+	SEC63	chr6	108214782	-
5CDS-5UTR	ENST00000324856	ENST00000409968		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000324856	ENST00000272643		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000324856	ENST00000413152		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000324856	ENST00000543459		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000324856	ENST00000485379		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-5UTR	ENST00000457599	ENST00000409968		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000457599	ENST00000272643		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000457599	ENST00000413152		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000457599	ENST00000543459		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000457599	ENST00000485379		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-5UTR	ENST00000374152	ENST00000409968		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000374152	ENST00000272643		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000374152	ENST00000413152		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000374152	ENST00000543459		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-intron	ENST00000374152	ENST00000485379		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
intron-5UTR	ENST00000540690	ENST00000409968		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
intron-intron	ENST00000540690	ENST00000272643		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
intron-intron	ENST00000540690	ENST00000413152		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
intron-intron	ENST00000540690	ENST00000543459		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
intron-intron	ENST00000540690	ENST00000485379		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	ARID1A	chr1	27059283	+	THSD7B	chr2	137639714	+
5CDS-5UTR	ENST00000537691	ENST00000334420		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
5CDS-5UTR	ENST00000537691	ENST00000342740		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
5CDS-5UTR	ENST00000397016	ENST00000334420		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
5CDS-5UTR	ENST00000397016	ENST00000342740		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
3UTR-5UTR	ENST00000560092	ENST00000334420		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
3UTR-5UTR	ENST00000560092	ENST00000342740		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
5CDS-5UTR	ENST00000216775	ENST00000334420		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
5CDS-5UTR	ENST00000216775	ENST00000342740		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPNE6	chr14	24542887	+	LRRC16B	chr14	24528344	+
Frame-shit	ENST00000370192	ENST00000367903		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-5UTR	ENST00000370192	ENST00000534288		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-5UTR	ENST00000370192	ENST00000313961		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-5UTR	ENST00000370192	ENST00000530507		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-intron	ENST00000370192	ENST00000527988		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-3CDS	ENST00000474241	ENST00000367903		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-5UTR	ENST00000474241	ENST00000534288		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-5UTR	ENST00000474241	ENST00000313961		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-5UTR	ENST00000474241	ENST00000530507		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-intron	ENST00000474241	ENST00000527988		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-3CDS	ENST00000423006	ENST00000367903		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-5UTR	ENST00000423006	ENST00000534288		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-5UTR	ENST00000423006	ENST00000313961		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-5UTR	ENST00000423006	ENST00000530507		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
intron-intron	ENST00000423006	ENST00000527988		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
Frame-shit	ENST00000306031	ENST00000367903		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-5UTR	ENST00000306031	ENST00000534288		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-5UTR	ENST00000306031	ENST00000313961		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-5UTR	ENST00000306031	ENST00000530507		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5CDS-intron	ENST00000306031	ENST00000527988		TCGA	RV	LIHC	TCGA-ED-A97K-01A	DPYD	chr1	98348820	-	RGS5	chr1	163138158	-
5UTR-intron	ENST00000306796	ENST00000392347		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
5UTR-intron	ENST00000306796	ENST00000389641		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
5UTR-intron	ENST00000306796	ENST00000392346		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
5UTR-intron	ENST00000306796	ENST00000327026		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
5UTR-intron	ENST00000306796	ENST00000392343		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
intron-intron	ENST00000354321	ENST00000392347		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
intron-intron	ENST00000354321	ENST00000389641		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
intron-intron	ENST00000354321	ENST00000392346		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
intron-intron	ENST00000354321	ENST00000327026		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
intron-intron	ENST00000354321	ENST00000392343		TCGA	RV	LIHC	TCGA-LG-A9QC-01A	DUS1L	chr17	80023489	-	CCDC57	chr17	80092070	-
In-frame	ENST00000431635	ENST00000392085		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
In-frame	ENST00000431635	ENST00000367755		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
In-frame	ENST00000431635	ENST00000542847		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
5CDS-intron	ENST00000431635	ENST00000534514		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
5CDS-intron	ENST00000431635	ENST00000538429		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
In-frame	ENST00000236051	ENST00000392085		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
In-frame	ENST00000236051	ENST00000367755		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
In-frame	ENST00000236051	ENST00000542847		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
5CDS-intron	ENST00000236051	ENST00000534514		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
5CDS-intron	ENST00000236051	ENST00000538429		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
intron-3CDS	ENST00000472982	ENST00000392085		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
intron-3CDS	ENST00000472982	ENST00000367755		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
intron-3CDS	ENST00000472982	ENST00000542847		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
intron-intron	ENST00000472982	ENST00000534514		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
intron-intron	ENST00000472982	ENST00000538429		TCGA	RV	LIHC	TCGA-EP-A3RK-01A	EBNA1BP2	chr1	43634610	-	FMO3	chr1	171072926	+
5CDS-5UTR	ENST00000455089	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000455089	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000455089	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-intron	ENST00000455089	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000342916	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000342916	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000342916	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-intron	ENST00000342916	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000344576	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000344576	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000344576	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-intron	ENST00000344576	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000420316	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000420316	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000420316	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-intron	ENST00000420316	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000275493	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000275493	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000275493	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-intron	ENST00000275493	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000442591	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000442591	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-5UTR	ENST00000442591	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
5CDS-intron	ENST00000442591	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
3UTR-5UTR	ENST00000463948	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
3UTR-5UTR	ENST00000463948	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
3UTR-5UTR	ENST00000463948	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
3UTR-intron	ENST00000463948	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
intron-5UTR	ENST00000454757	ENST00000389794		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
intron-5UTR	ENST00000454757	ENST00000389793		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
intron-5UTR	ENST00000454757	ENST00000536965		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
intron-intron	ENST00000454757	ENST00000473037		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	EGFR	chr7	55087058	+	LYST	chr1	235996967	-
Frame-shit	ENST00000490882	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000490882	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-3UTR	ENST00000490882	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
Frame-shit	ENST00000429972	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000429972	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-3UTR	ENST00000429972	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
Frame-shit	ENST00000295956	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000295956	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-3UTR	ENST00000295956	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
Frame-shit	ENST00000358537	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000358537	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-3UTR	ENST00000358537	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
Frame-shit	ENST00000357272	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000357272	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-3UTR	ENST00000357272	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
Frame-shit	ENST00000348383	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-intron	ENST00000348383	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
5CDS-3UTR	ENST00000348383	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-3CDS	ENST00000493452	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000493452	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-3UTR	ENST00000493452	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-3CDS	ENST00000419752	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000419752	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-3UTR	ENST00000419752	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-3CDS	ENST00000484981	ENST00000295951		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000416870		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000295952		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000383718		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000428312		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000449503		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000472546		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000442599		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-intron	ENST00000484981	ENST00000495364		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
intron-3UTR	ENST00000484981	ENST00000494088		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	FLNB	chr3	57994583	+	SLMAP	chr3	57913023	+
Frame-shit	ENST00000371253	ENST00000296861		TCGA	RV	LIHC	TCGA-ED-A82E-01A	GPR110	chr6	46976681	-	TNFRSF21	chr6	47221257	-
5UTR-3CDS	ENST00000449332	ENST00000296861		TCGA	RV	LIHC	TCGA-ED-A82E-01A	GPR110	chr6	46976681	-	TNFRSF21	chr6	47221257	-
Frame-shit	ENST00000283297	ENST00000296861		TCGA	RV	LIHC	TCGA-ED-A82E-01A	GPR110	chr6	46976681	-	TNFRSF21	chr6	47221257	-
intron-3CDS	ENST00000371243	ENST00000296861		TCGA	RV	LIHC	TCGA-ED-A82E-01A	GPR110	chr6	46976681	-	TNFRSF21	chr6	47221257	-
Frame-shit	ENST00000535193	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
Frame-shit	ENST00000543771	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
Frame-shit	ENST00000381306	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
Frame-shit	ENST00000381309	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
5UTR-3CDS	ENST00000442236	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
3UTR-3CDS	ENST00000489243	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
intron-3CDS	ENST00000536108	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
intron-3CDS	ENST00000428870	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
Frame-shit	ENST00000401787	ENST00000239316		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	KDM4C	chr9	6814745	+	INSL4	chr9	5233654	+
5UTR-3CDS	ENST00000377093	ENST00000253251		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000377093	ENST00000377157		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000377093	ENST00000343090		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000377093	ENST00000377153		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000377093	ENST00000475795		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000263934	ENST00000253251		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000263934	ENST00000377157		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000263934	ENST00000343090		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000263934	ENST00000377153		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000263934	ENST00000475795		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377086	ENST00000253251		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377086	ENST00000377157		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377086	ENST00000343090		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000377086	ENST00000377153		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000377086	ENST00000475795		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377083	ENST00000253251		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377083	ENST00000377157		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377083	ENST00000343090		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000377083	ENST00000377153		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000377083	ENST00000475795		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377081	ENST00000253251		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377081	ENST00000377157		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377081	ENST00000343090		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000377081	ENST00000377153		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000377081	ENST00000475795		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000465635	ENST00000253251		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000465635	ENST00000377157		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000465635	ENST00000343090		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000465635	ENST00000377153		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
intron-intron	ENST00000465635	ENST00000475795		TCGA	RV	LIHC	TCGA-G3-A25X-01A	KIF1B	chr1	10270936	+	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000356113	ENST00000274026		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LIPC	chr15	58703017	+	CCNA2	chr4	122742246	-
5UTR-3CDS	ENST00000414170	ENST00000274026		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LIPC	chr15	58703017	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000299022	ENST00000274026		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LIPC	chr15	58703017	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000433326	ENST00000274026		TCGA	RV	LIHC	TCGA-GJ-A6C0-01A	LIPC	chr15	58703017	+	CCNA2	chr4	122742246	-
In-frame	ENST00000353442	ENST00000486171		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
Frame-shit	ENST00000353442	ENST00000311737		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
5UTR-3CDS	ENST00000359422	ENST00000486171		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
5UTR-3CDS	ENST00000359422	ENST00000311737		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
In-frame	ENST00000354505	ENST00000486171		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
Frame-shit	ENST00000354505	ENST00000311737		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
In-frame	ENST00000540390	ENST00000486171		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
Frame-shit	ENST00000540390	ENST00000311737		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
intron-3CDS	ENST00000430825	ENST00000486171		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
intron-3CDS	ENST00000430825	ENST00000311737		TCGA	RV	LIHC	TCGA-DD-AACL-01A	LMBR1	chr7	156589083	-	PRSS1	chr7	142460719	+
Frame-shit	ENST00000589123	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000589123	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000589123	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000346156	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000346156	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000346156	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000395111	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000395111	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000395111	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000586919	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000586919	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000586919	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000341919	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000341919	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000341919	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000590282	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000590282	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000590282	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000443272	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000443272	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000443272	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000588839	ENST00000292672		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000588839	ENST00000541430		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
intron-intron	ENST00000588839	ENST00000588101		TCGA	RV	LIHC	TCGA-BC-A10R-01A	NFIC	chr19	3382241	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000554719	ENST00000238561		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000554719	ENST00000341211		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3UTR	ENST00000554719	ENST00000556560		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000335750	ENST00000238561		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000335750	ENST00000341211		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3UTR	ENST00000335750	ENST00000556560		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000557594	ENST00000238561		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000557594	ENST00000341211		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3UTR	ENST00000557594	ENST00000556560		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000281127	ENST00000238561		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000281127	ENST00000341211		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3UTR	ENST00000281127	ENST00000556560		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000428277	ENST00000238561		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000428277	ENST00000341211		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3UTR	ENST00000428277	ENST00000556560		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000556003	ENST00000238561		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3CDS	ENST00000556003	ENST00000341211		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
intron-3UTR	ENST00000556003	ENST00000556560		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	NRXN3	chr14	78710145	+	ADCK1	chr14	78397861	+
5UTR-3CDS	ENST00000393958	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000393958	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000393958	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-3CDS	ENST00000393960	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000393960	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000393960	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-3CDS	ENST00000355677	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000355677	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000355677	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-3CDS	ENST00000524491	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000524491	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
5UTR-intron	ENST00000524491	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-3CDS	ENST00000529047	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-intron	ENST00000529047	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-intron	ENST00000529047	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-3CDS	ENST00000393955	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-intron	ENST00000393955	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-intron	ENST00000393955	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-3CDS	ENST00000528224	ENST00000330714		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-intron	ENST00000528224	ENST00000543692		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
intron-intron	ENST00000528224	ENST00000496774		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PC	chr11	66719901	-	MX2	chr21	42762492	+
In-frame	ENST00000563679	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000563679	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000563679	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
In-frame	ENST00000325823	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000325823	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000325823	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
In-frame	ENST00000447912	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000447912	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000447912	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
In-frame	ENST00000535621	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000535621	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000535621	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
intron-3CDS	ENST00000455313	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
intron-intron	ENST00000455313	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
intron-intron	ENST00000455313	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
In-frame	ENST00000396410	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000396410	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000396410	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
In-frame	ENST00000569715	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000569715	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000569715	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
In-frame	ENST00000450288	ENST00000325874		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000450288	ENST00000581280		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
5CDS-intron	ENST00000450288	ENST00000394744		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15123913	+	RAB11FIP4	chr17	29761052	+
Frame-shit	ENST00000413366	ENST00000443572		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
Frame-shit	ENST00000413366	ENST00000406116		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
Frame-shit	ENST00000413366	ENST00000225577		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
5CDS-5UTR	ENST00000413366	ENST00000393021		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
5CDS-intron	ENST00000413366	ENST00000587061		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000583361	ENST00000443572		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000583361	ENST00000406116		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000583361	ENST00000225577		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
intron-5UTR	ENST00000583361	ENST00000393021		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
intron-intron	ENST00000583361	ENST00000587061		TCGA	RV	LIHC	TCGA-DD-AADC-01A	PRKCA	chr17	64683385	+	RPS6KB1	chr17	57987923	+
Frame-shit	ENST00000321437	ENST00000561311		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
Frame-shit	ENST00000321437	ENST00000306829		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
5CDS-3UTR	ENST00000321437	ENST00000559908		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
5CDS-intron	ENST00000321437	ENST00000472902		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
Frame-shit	ENST00000448330	ENST00000561311		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
Frame-shit	ENST00000448330	ENST00000306829		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
5CDS-3UTR	ENST00000448330	ENST00000559908		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
5CDS-intron	ENST00000448330	ENST00000472902		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	RAB8B	chr15	63481947	+	TLN2	chr15	63030413	+
Frame-shit	ENST00000356286	ENST00000217233		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
5CDS-3UTR	ENST00000356286	ENST00000485293		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
5CDS-3UTR	ENST00000356286	ENST00000422053		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
Frame-shit	ENST00000353660	ENST00000217233		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
5CDS-3UTR	ENST00000353660	ENST00000485293		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
5CDS-3UTR	ENST00000353660	ENST00000422053		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
In-frame	ENST00000382181	ENST00000217233		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
5CDS-3UTR	ENST00000382181	ENST00000485293		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
5CDS-3UTR	ENST00000382181	ENST00000422053		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3CDS	ENST00000475269	ENST00000217233		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3UTR	ENST00000475269	ENST00000485293		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3UTR	ENST00000475269	ENST00000422053		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3CDS	ENST00000400245	ENST00000217233		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3UTR	ENST00000400245	ENST00000485293		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3UTR	ENST00000400245	ENST00000422053		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3CDS	ENST00000400247	ENST00000217233		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3UTR	ENST00000400247	ENST00000485293		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
intron-3UTR	ENST00000400247	ENST00000422053		TCGA	RV	LIHC	TCGA-RC-A7SK-01A	RBCK1	chr20	398574	+	TRIB3	chr20	368655	+
Frame-shit	ENST00000361756	ENST00000336232		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000361756	ENST00000545207		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000361756	ENST00000535878		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000361756	ENST00000311438		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000361756	ENST00000430500		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5CDS-5UTR	ENST00000361756	ENST00000542795		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000533380	ENST00000336232		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000533380	ENST00000545207		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000533380	ENST00000535878		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000533380	ENST00000311438		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000533380	ENST00000430500		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5CDS-5UTR	ENST00000533380	ENST00000542795		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000393713	ENST00000336232		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000393713	ENST00000545207		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000393713	ENST00000535878		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000393713	ENST00000311438		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000393713	ENST00000430500		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5CDS-5UTR	ENST00000393713	ENST00000542795		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
3UTR-3CDS	ENST00000490867	ENST00000336232		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
3UTR-3CDS	ENST00000490867	ENST00000545207		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
3UTR-3CDS	ENST00000490867	ENST00000535878		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
3UTR-3CDS	ENST00000490867	ENST00000311438		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
3UTR-3CDS	ENST00000490867	ENST00000430500		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
3UTR-5UTR	ENST00000490867	ENST00000542795		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5UTR-3CDS	ENST00000545854	ENST00000336232		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5UTR-3CDS	ENST00000545854	ENST00000545207		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5UTR-3CDS	ENST00000545854	ENST00000535878		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5UTR-3CDS	ENST00000545854	ENST00000311438		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5UTR-3CDS	ENST00000545854	ENST00000430500		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5UTR-5UTR	ENST00000545854	ENST00000542795		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000530137	ENST00000336232		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000530137	ENST00000545207		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000530137	ENST00000535878		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000530137	ENST00000311438		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
Frame-shit	ENST00000530137	ENST00000430500		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5CDS-5UTR	ENST00000530137	ENST00000542795		TCGA	RV	LIHC	TCGA-DD-AADY-01A	RNF121	chr11	71671937	+	SLC22A8	chr11	62763624	-
5CDS-intron	ENST00000367698	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367698	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367698	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367698	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367698	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367698	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
intron-intron	ENST00000494024	ENST00000300134		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
intron-intron	ENST00000494024	ENST00000538913		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
intron-intron	ENST00000494024	ENST00000543873		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
intron-intron	ENST00000494024	ENST00000556155		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
intron-intron	ENST00000494024	ENST00000537215		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
intron-intron	ENST00000494024	ENST00000454075		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SERPINC1	chr1	173872948	-	STAT6	chr12	57496773	-
5CDS-5UTR	ENST00000367505	ENST00000392491		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-intron	ENST00000367505	ENST00000607474		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367505	ENST00000368452		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367505	ENST00000368448		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367505	ENST00000392490		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367505	ENST00000258014		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367505	ENST00000354275		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367505	ENST00000368446		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000392491		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-intron	ENST00000367503	ENST00000607474		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000368452		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000368448		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000392490		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000258014		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000354275		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000367503	ENST00000368446		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000392491		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-intron	ENST00000438092	ENST00000607474		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000368452		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000368448		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000392490		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000258014		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000354275		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000438092	ENST00000368446		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000392491		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-intron	ENST00000275233	ENST00000607474		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000368452		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000368448		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000392490		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000258014		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000354275		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-5UTR	ENST00000275233	ENST00000368446		TCGA	RV	LIHC	TCGA-DD-A113-01A	SHPRH	chr6	146240484	-	PKIB	chr6	123038932	+
5CDS-intron	ENST00000295951	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000295951	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000295951	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000295951	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5UTR-intron	ENST00000416870	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5UTR-intron	ENST00000416870	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5UTR-5UTR	ENST00000416870	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5UTR-5UTR	ENST00000416870	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000295952	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000295952	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000295952	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000295952	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000383718	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000383718	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000383718	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000383718	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000428312	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000428312	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000428312	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000428312	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000449503	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000449503	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000449503	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000449503	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000472546	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000472546	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000472546	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000472546	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000442599	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000442599	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000442599	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000442599	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000495364	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000495364	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000495364	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000495364	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000494088	ENST00000371322		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000494088	ENST00000336592		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000494088	ENST00000404115		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000494088	ENST00000486604		TCGA	RV	LIHC	TCGA-DD-A11C-01A	SLMAP	chr3	57743576	+	CUL4B	chrX	119708485	-
In-frame	ENST00000397517	ENST00000376460		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
In-frame	ENST00000397517	ENST00000339416		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
5CDS-3UTR	ENST00000397517	ENST00000448493		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
5CDS-intron	ENST00000397517	ENST00000442173		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
5CDS-intron	ENST00000397517	ENST00000461998		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
In-frame	ENST00000539966	ENST00000376460		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
In-frame	ENST00000539966	ENST00000339416		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
5CDS-3UTR	ENST00000539966	ENST00000448493		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
5CDS-intron	ENST00000539966	ENST00000442173		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
5CDS-intron	ENST00000539966	ENST00000461998		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-3CDS	ENST00000481288	ENST00000376460		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-3CDS	ENST00000481288	ENST00000339416		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-3UTR	ENST00000481288	ENST00000448493		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-intron	ENST00000481288	ENST00000442173		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-intron	ENST00000481288	ENST00000461998		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-3CDS	ENST00000376547	ENST00000376460		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-3CDS	ENST00000376547	ENST00000339416		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-3UTR	ENST00000376547	ENST00000448493		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-intron	ENST00000376547	ENST00000442173		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-intron	ENST00000376547	ENST00000461998		TCGA	RV	LIHC	TCGA-BC-A10R-01A	STK24	chr13	99228999	-	DOCK9	chr13	99462545	-
intron-5UTR	ENST00000304363	ENST00000304271		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000304363	ENST00000533310		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000304363	ENST00000530166		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000401547	ENST00000304271		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000401547	ENST00000533310		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000401547	ENST00000530166		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000405515	ENST00000304271		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000405515	ENST00000533310		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000405515	ENST00000530166		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000402789	ENST00000304271		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000402789	ENST00000533310		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000402789	ENST00000530166		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000402185	ENST00000304271		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000402185	ENST00000533310		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000402185	ENST00000530166		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	SUV420H1	chr11	67980944	-	C11orf24	chr11	68035719	-
In-frame	ENST00000435962	ENST00000267622		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
5CDS-intron	ENST00000435962	ENST00000555105		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
Frame-shit	ENST00000340892	ENST00000267622		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
5CDS-intron	ENST00000340892	ENST00000555105		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
In-frame	ENST00000360594	ENST00000267622		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
5CDS-intron	ENST00000360594	ENST00000555105		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
In-frame	ENST00000556018	ENST00000267622		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
5CDS-intron	ENST00000556018	ENST00000555105		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
intron-3CDS	ENST00000555302	ENST00000267622		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
intron-intron	ENST00000555302	ENST00000555105		TCGA	RV	LIHC	TCGA-BC-A216-01A	TC2N	chr14	92280047	-	TRIP11	chr14	92442533	-
In-frame	ENST00000332149	ENST00000332830		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-3UTR	ENST00000332149	ENST00000577226		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000332149	ENST00000268756		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000332149	ENST00000582655		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
In-frame	ENST00000398585	ENST00000332830		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-3UTR	ENST00000398585	ENST00000577226		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000398585	ENST00000268756		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000398585	ENST00000582655		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
Frame-shit	ENST00000458356	ENST00000332830		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-3UTR	ENST00000458356	ENST00000577226		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000458356	ENST00000268756		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000458356	ENST00000582655		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
intron-3CDS	ENST00000497881	ENST00000332830		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
intron-3UTR	ENST00000497881	ENST00000577226		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
intron-intron	ENST00000497881	ENST00000268756		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
intron-intron	ENST00000497881	ENST00000582655		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	TMPRSS2	chr21	42860321	-	PHF12	chr17	27235899	-
Frame-shit	ENST00000321105	ENST00000299381		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000321105	ENST00000470481		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
Frame-shit	ENST00000540524	ENST00000299381		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000540524	ENST00000470481		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
Frame-shit	ENST00000542570	ENST00000299381		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
5CDS-3UTR	ENST00000542570	ENST00000470481		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
intron-3CDS	ENST00000582230	ENST00000299381		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
intron-3UTR	ENST00000582230	ENST00000470481		TCGA	RV	LIHC	TCGA-MR-A8JO-01A	TOP3A	chr17	18186012	-	ANAPC16	chr10	73990124	+
5UTR-3CDS	ENST00000361042	ENST00000381655		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
5UTR-3CDS	ENST00000361042	ENST00000255283		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
5UTR-3UTR	ENST00000361042	ENST00000491840		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
5UTR-3CDS	ENST00000335327	ENST00000381655		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
5UTR-3CDS	ENST00000335327	ENST00000255283		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
5UTR-3UTR	ENST00000335327	ENST00000491840		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
intron-3CDS	ENST00000496788	ENST00000381655		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
intron-3CDS	ENST00000496788	ENST00000255283		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
intron-3UTR	ENST00000496788	ENST00000491840		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	WASF3	chr13	27131956	+	ATP8A2	chr13	26411301	+
5CDS-intron	ENST00000262144	ENST00000427569		TCGA	RV	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	AARSD1	chr17	41123713	-
5CDS-intron	ENST00000262144	ENST00000416949		TCGA	RV	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	AARSD1	chr17	41123713	-
intron-intron	ENST00000562331	ENST00000427569		TCGA	RV	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	AARSD1	chr17	41123713	-
intron-intron	ENST00000562331	ENST00000416949		TCGA	RV	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	AARSD1	chr17	41123713	-
3UTR-3CDS	ENST00000295897	ENST00000376929		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
3UTR-intron	ENST00000295897	ENST00000506690		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
3UTR-intron	ENST00000295897	ENST00000389805		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
3UTR-intron	ENST00000295897	ENST00000402874		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
3UTR-intron	ENST00000295897	ENST00000510187		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
3UTR-intron	ENST00000295897	ENST00000360718		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000415165	ENST00000376929		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000415165	ENST00000506690		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000415165	ENST00000389805		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000415165	ENST00000402874		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000415165	ENST00000510187		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000415165	ENST00000360718		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000503124	ENST00000376929		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000503124	ENST00000506690		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000503124	ENST00000389805		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000503124	ENST00000402874		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000503124	ENST00000510187		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000503124	ENST00000360718		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000509063	ENST00000376929		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000509063	ENST00000506690		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000509063	ENST00000389805		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000509063	ENST00000402874		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000509063	ENST00000510187		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000509063	ENST00000360718		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000401494	ENST00000376929		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000401494	ENST00000506690		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000401494	ENST00000389805		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000401494	ENST00000402874		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000401494	ENST00000510187		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000401494	ENST00000360718		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000505649	ENST00000376929		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000505649	ENST00000506690		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000505649	ENST00000389805		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000505649	ENST00000402874		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000505649	ENST00000510187		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000505649	ENST00000360718		TCGA	RV	LIHC	TCGA-DD-A3A7-01A	ALB	chr4	74286971	+	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000265132	ENST00000369002		TCGA	RV	LIHC	TCGA-DD-AADP-01A	AMBP	chr9	116822407	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000265132	ENST00000460009		TCGA	RV	LIHC	TCGA-DD-AADP-01A	AMBP	chr9	116822407	-	SEC63	chr6	108214782	-
3UTR-3CDS	ENST00000539787	ENST00000406606		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-3CDS	ENST00000539787	ENST00000371850		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-3CDS	ENST00000539787	ENST00000371851		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-intron	ENST00000539787	ENST00000486113		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
Frame-shit	ENST00000345358	ENST00000406606		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000345358	ENST00000371850		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000345358	ENST00000371851		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
5CDS-intron	ENST00000345358	ENST00000486113		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-3CDS	ENST00000391871	ENST00000406606		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-3CDS	ENST00000391871	ENST00000371850		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-3CDS	ENST00000391871	ENST00000371851		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
3UTR-intron	ENST00000391871	ENST00000486113		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
Frame-shit	ENST00000415969	ENST00000406606		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000415969	ENST00000371850		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000415969	ENST00000371851		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
5CDS-intron	ENST00000415969	ENST00000486113		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
Frame-shit	ENST00000354470	ENST00000406606		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000354470	ENST00000371850		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000354470	ENST00000371851		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
5CDS-intron	ENST00000354470	ENST00000486113		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
In-frame	ENST00000293288	ENST00000406606		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
Frame-shit	ENST00000293288	ENST00000371850		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
Frame-shit	ENST00000293288	ENST00000371851		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
5CDS-intron	ENST00000293288	ENST00000486113		TCGA	RV	LIHC	TCGA-DD-A73A-01A	BAX	chr19	49464171	+	VAV2	chr9	136629231	-
Frame-shit	ENST00000339594	ENST00000414749		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000339594	ENST00000429400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000339594	ENST00000395189		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000339594	ENST00000313375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000339594	ENST00000354613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000339594	ENST00000434326		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000404251	ENST00000414749		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000404251	ENST00000429400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000404251	ENST00000395189		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000404251	ENST00000313375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000404251	ENST00000354613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
Frame-shit	ENST00000404251	ENST00000434326		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	BAZ1B	chr7	72873866	-	MLXIPL	chr7	73014025	-
intron-intron	ENST00000245907	ENST00000280653		TCGA	RV	LIHC	TCGA-DD-A1EC-01A	C3	chr19	6677846	-	MFN1	chr3	179096011	+
intron-intron	ENST00000245907	ENST00000471841		TCGA	RV	LIHC	TCGA-DD-A1EC-01A	C3	chr19	6677846	-	MFN1	chr3	179096011	+
intron-intron	ENST00000245907	ENST00000263969		TCGA	RV	LIHC	TCGA-DD-A1EC-01A	C3	chr19	6677846	-	MFN1	chr3	179096011	+
intron-intron	ENST00000599668	ENST00000280653		TCGA	RV	LIHC	TCGA-DD-A1EC-01A	C3	chr19	6677846	-	MFN1	chr3	179096011	+
intron-intron	ENST00000599668	ENST00000471841		TCGA	RV	LIHC	TCGA-DD-A1EC-01A	C3	chr19	6677846	-	MFN1	chr3	179096011	+
intron-intron	ENST00000599668	ENST00000263969		TCGA	RV	LIHC	TCGA-DD-A1EC-01A	C3	chr19	6677846	-	MFN1	chr3	179096011	+
Frame-shit	ENST00000375640	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375640	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375640	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375640	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375640	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375641	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375641	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375641	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375641	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375641	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375638	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375638	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375638	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375638	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375638	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375635	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375635	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375635	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375635	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375635	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375639	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375639	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375639	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375639	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375639	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375642	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375642	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375642	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375642	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375642	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000395789	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000395789	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000395789	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000395789	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000395789	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375633	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375633	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000375633	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375633	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000375633	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000395788	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000395788	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
Frame-shit	ENST00000395788	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000395788	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5CDS-intron	ENST00000395788	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000424962	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000424962	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000424962	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000424962	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000424962	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000456268	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000456268	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000456268	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000456268	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000456268	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000435938	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000435938	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000435938	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000435938	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000435938	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000433752	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000433752	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000433752	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000433752	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000433752	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000458514	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000458514	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000458514	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000458514	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000458514	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000549426	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000549426	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000549426	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000549426	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000549426	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550200	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550200	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550200	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000550200	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000550200	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000430690	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000430690	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000430690	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000430690	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000430690	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436558	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436558	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436558	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000436558	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000436558	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000456690	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000456690	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000456690	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000456690	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000456690	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000439907	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000439907	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000439907	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000439907	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000439907	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444974	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444974	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444974	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000444974	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000444974	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000439865	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000439865	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000439865	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000439865	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000439865	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000413638	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000413638	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000413638	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000413638	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000413638	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000423640	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000423640	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000423640	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000423640	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000423640	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444192	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444192	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444192	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000444192	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000444192	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000551797	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000551797	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000551797	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000551797	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000551797	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000552514	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000552514	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000552514	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000552514	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000552514	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000440361	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000440361	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000440361	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000440361	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000440361	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000443974	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000443974	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000443974	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000443974	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000443974	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000416886	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000416886	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000416886	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000416886	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000416886	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436205	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436205	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436205	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000436205	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000436205	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000450610	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000450610	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000450610	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000450610	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000450610	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000433697	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000433697	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000433697	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000433697	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000433697	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000414434	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000414434	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000414434	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000414434	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000414434	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000421605	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000421605	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000421605	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000421605	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000421605	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444331	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444331	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000444331	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000444331	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000444331	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000551957	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000551957	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000551957	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000551957	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000551957	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550492	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550492	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550492	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000550492	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000550492	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000423916	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000423916	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000423916	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000423916	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000423916	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436495	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436495	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000436495	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000436495	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000436495	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000426843	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000426843	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000426843	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000426843	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000426843	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000421039	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000421039	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000421039	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000421039	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000421039	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000414536	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000414536	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000414536	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000414536	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000414536	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400038	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400038	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400038	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400038	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400038	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383384	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383384	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383384	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000383384	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000383384	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383385	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383385	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383385	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000383385	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000383385	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383383	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383383	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000383383	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000383383	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000383383	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000547624	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000547624	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000547624	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000547624	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000547624	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550685	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550685	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000550685	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000550685	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000550685	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400037	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400037	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400037	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400037	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400037	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400035	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400035	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400035	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400035	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400035	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400034	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400034	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400034	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400034	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400034	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400039	ENST00000261837		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400039	ENST00000396335		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-3CDS	ENST00000400039	ENST00000358784		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400039	ENST00000559348		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
intron-intron	ENST00000400039	ENST00000560116		TCGA	RV	LIHC	TCGA-DD-A115-01A	C6orf48	chr6	31805212	+	GNB5	chr15	52446273	-
5UTR-3CDS	ENST00000308025	ENST00000309739		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DDX23	chr12	49245867	-	RND1	chr12	49255901	-
5UTR-3CDS	ENST00000553182	ENST00000309739		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DDX23	chr12	49245867	-	RND1	chr12	49255901	-
5UTR-3CDS	ENST00000308025	ENST00000309739		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DDX23	chr12	49245867	-	RND1	chr12	49255901	-
5UTR-3CDS	ENST00000553182	ENST00000309739		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DDX23	chr12	49245867	-	RND1	chr12	49255901	-
intron-3CDS	ENST00000273814	ENST00000382865		TCGA	RV	LIHC	TCGA-DD-A113-01A	DGKQ	chr4	980594	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000273814	ENST00000511885		TCGA	RV	LIHC	TCGA-DD-A113-01A	DGKQ	chr4	980594	-	POLN	chr4	2097660	-
intron-intron	ENST00000273814	ENST00000515357		TCGA	RV	LIHC	TCGA-DD-A113-01A	DGKQ	chr4	980594	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000502309	ENST00000382865		TCGA	RV	LIHC	TCGA-DD-A113-01A	DGKQ	chr4	980594	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000502309	ENST00000511885		TCGA	RV	LIHC	TCGA-DD-A113-01A	DGKQ	chr4	980594	-	POLN	chr4	2097660	-
intron-intron	ENST00000502309	ENST00000515357		TCGA	RV	LIHC	TCGA-DD-A113-01A	DGKQ	chr4	980594	-	POLN	chr4	2097660	-
Frame-shit	ENST00000371269	ENST00000272167		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000366837		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
5CDS-intron	ENST00000371269	ENST00000467015		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000537443	ENST00000272167		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000366837		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000537443	ENST00000467015		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-3CDS	ENST00000535035	ENST00000272167		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000366837		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
intron-intron	ENST00000535035	ENST00000467015		TCGA	RV	LIHC	TCGA-G3-A25Z-01A	DHCR24	chr1	55315306	-	EPHX1	chr1	225997794	+
In-frame	ENST00000360534	ENST00000409968		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
In-frame	ENST00000360534	ENST00000272643		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
In-frame	ENST00000360534	ENST00000413152		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
5CDS-intron	ENST00000360534	ENST00000543459		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
5CDS-intron	ENST00000360534	ENST00000485379		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
intron-3CDS	ENST00000491591	ENST00000409968		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
intron-3CDS	ENST00000491591	ENST00000272643		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
intron-3CDS	ENST00000491591	ENST00000413152		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
intron-intron	ENST00000491591	ENST00000543459		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
intron-intron	ENST00000491591	ENST00000485379		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	DPP4	chr2	162929909	-	THSD7B	chr2	137813990	+
5UTR-3CDS	ENST00000283365	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-5UTR	ENST00000283365	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-5UTR	ENST00000283365	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-intron	ENST00000283365	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-3CDS	ENST00000596745	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-5UTR	ENST00000596745	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-5UTR	ENST00000596745	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-intron	ENST00000596745	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-3CDS	ENST00000315456	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-5UTR	ENST00000315456	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-5UTR	ENST00000315456	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
5UTR-intron	ENST00000315456	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000598334	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000598334	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000598334	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000598334	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000554864	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000554864	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000554864	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000554864	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000399121	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000399121	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000399121	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000399121	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000595022	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000595022	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000595022	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000595022	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000269190	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000269190	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000269190	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000269190	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000399097	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000399097	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000399097	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000399097	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000598774	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000598774	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000598774	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000598774	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000598142	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000598142	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000598142	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000598142	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000348997	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000348997	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000348997	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000348997	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000597599	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000597599	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000597599	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000597599	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000269191	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000269191	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000269191	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000269191	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000444659	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000444659	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000444659	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000444659	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000399113	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000399113	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000399113	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000399113	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000601125	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000601125	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000601125	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000601125	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000269192	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000269192	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000269192	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000269192	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000591182	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000591182	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000591182	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000591182	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000597674	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000597674	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000597674	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000597674	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000556414	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000556414	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000556414	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000556414	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000599844	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000599844	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000599844	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000599844	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000590831	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000590831	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000590831	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000590831	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000592449	ENST00000383168		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000592449	ENST00000581374		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-5UTR	ENST00000592449	ENST00000440832		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-intron	ENST00000592449	ENST00000583022		TCGA	RV	LIHC	TCGA-FV-A3I0-01A	DTNA	chr18	32073478	+	AQP4	chr18	24442560	-
intron-3CDS	ENST00000494373	ENST00000295304		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	ERLEC1	chr2	54021586	+	CHAC2	chr2	54001279	+
Frame-shit	ENST00000405123	ENST00000295304		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	ERLEC1	chr2	54021586	+	CHAC2	chr2	54001279	+
Frame-shit	ENST00000185150	ENST00000295304		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	ERLEC1	chr2	54021586	+	CHAC2	chr2	54001279	+
Frame-shit	ENST00000378239	ENST00000295304		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	ERLEC1	chr2	54021586	+	CHAC2	chr2	54001279	+
5UTR-intron	ENST00000325212	ENST00000530053		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000325212	ENST00000530273		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000325212	ENST00000298050		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000325212	ENST00000527307		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000325212	ENST00000525646		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000344196	ENST00000530053		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000344196	ENST00000530273		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000344196	ENST00000298050		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000344196	ENST00000527307		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000344196	ENST00000525646		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000411936	ENST00000530053		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000411936	ENST00000530273		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000411936	ENST00000298050		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000411936	ENST00000527307		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5UTR-intron	ENST00000411936	ENST00000525646		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531700	ENST00000530053		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531700	ENST00000530273		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531700	ENST00000298050		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531700	ENST00000527307		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531700	ENST00000525646		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531622	ENST00000530053		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531622	ENST00000530273		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531622	ENST00000298050		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531622	ENST00000527307		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
intron-intron	ENST00000531622	ENST00000525646		TCGA	RV	LIHC	TCGA-G3-A5SL-01A	KIAA1731	chr11	93394940	+	CCDC67	chr11	93104204	+
5CDS-intron	ENST00000285407	ENST00000281081		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	KLF10	chr8	103667794	-	NUBPL	chr14	31995258	+
5CDS-intron	ENST00000285407	ENST00000536705		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	KLF10	chr8	103667794	-	NUBPL	chr14	31995258	+
5CDS-intron	ENST00000285407	ENST00000418681		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	KLF10	chr8	103667794	-	NUBPL	chr14	31995258	+
intron-intron	ENST00000395884	ENST00000281081		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	KLF10	chr8	103667794	-	NUBPL	chr14	31995258	+
intron-intron	ENST00000395884	ENST00000536705		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	KLF10	chr8	103667794	-	NUBPL	chr14	31995258	+
intron-intron	ENST00000395884	ENST00000418681		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	KLF10	chr8	103667794	-	NUBPL	chr14	31995258	+
5UTR-5UTR	ENST00000355630	ENST00000426127		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000355630	ENST00000311378		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000396617	ENST00000426127		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000396617	ENST00000311378		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000402042	ENST00000426127		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000402042	ENST00000311378		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000466278	ENST00000426127		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5UTR-5UTR	ENST00000466278	ENST00000311378		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
intron-5UTR	ENST00000407029	ENST00000426127		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
intron-5UTR	ENST00000407029	ENST00000311378		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
intron-5UTR	ENST00000402630	ENST00000426127		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
intron-5UTR	ENST00000402630	ENST00000311378		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	MKL1	chr22	40990678	-	WFIKKN2	chr17	48916860	+
5CDS-5UTR	ENST00000441750	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000441750	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-intron	ENST00000441750	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000295897		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000415165		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000503124		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000509063		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-5UTR	ENST00000281513	ENST00000401494		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
5CDS-intron	ENST00000281513	ENST00000505649		TCGA	RV	LIHC	TCGA-DD-AACH-01A	NBAS	chr2	15307033	-	ALB	chr4	74270025	+
Frame-shit	ENST00000354179	ENST00000292408		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000354179	ENST00000393648		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000354179	ENST00000502906		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000354179	ENST00000292410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000354179	ENST00000507708		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000354179	ENST00000393637		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000439151	ENST00000292408		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000439151	ENST00000393648		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000439151	ENST00000502906		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000439151	ENST00000292410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000439151	ENST00000507708		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000439151	ENST00000393637		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000347982	ENST00000292408		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000347982	ENST00000393648		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000347982	ENST00000502906		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000347982	ENST00000292410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000347982	ENST00000507708		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000347982	ENST00000393637		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000361032	ENST00000292408		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000361032	ENST00000393648		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000361032	ENST00000502906		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000361032	ENST00000292410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000361032	ENST00000507708		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000361032	ENST00000393637		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000511258	ENST00000292408		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000511258	ENST00000393648		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000511258	ENST00000502906		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
Frame-shit	ENST00000511258	ENST00000292410		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000511258	ENST00000507708		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
5CDS-intron	ENST00000511258	ENST00000393637		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	NSD1	chr5	176563031	+	FGFR4	chr5	176519322	+
In-frame	ENST00000375006	ENST00000396198		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
In-frame	ENST00000375006	ENST00000330807		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
In-frame	ENST00000375006	ENST00000335854		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
5CDS-5UTR	ENST00000375006	ENST00000498636		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
intron-3CDS	ENST00000545676	ENST00000396198		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
intron-3CDS	ENST00000545676	ENST00000330807		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
intron-3CDS	ENST00000545676	ENST00000335854		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
intron-5UTR	ENST00000545676	ENST00000498636		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
In-frame	ENST00000374992	ENST00000396198		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
In-frame	ENST00000374992	ENST00000330807		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
In-frame	ENST00000374992	ENST00000335854		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
5CDS-5UTR	ENST00000374992	ENST00000498636		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	PFKFB1	chrX	55020344	-	ALAS2	chrX	55035776	-
5UTR-3CDS	ENST00000373839	ENST00000253063		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	PHACTR4	chr1	28696336	+	SESN2	chr1	28595694	+
3UTR-3CDS	ENST00000493669	ENST00000253063		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	PHACTR4	chr1	28696336	+	SESN2	chr1	28595694	+
intron-3CDS	ENST00000373836	ENST00000253063		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	PHACTR4	chr1	28696336	+	SESN2	chr1	28595694	+
intron-3CDS	ENST00000460467	ENST00000314571		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000383797		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000454502		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000402228		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000444864		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000284995		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000415684		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000460467	ENST00000475595		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-3CDS	ENST00000396755	ENST00000314571		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000383797		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000454502		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000402228		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000444864		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000284995		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000415684		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000396755	ENST00000475595		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-3CDS	ENST00000418129	ENST00000314571		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000383797		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000454502		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000402228		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000444864		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000284995		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000415684		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
5UTR-intron	ENST00000418129	ENST00000475595		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-3CDS	ENST00000432376	ENST00000314571		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000383797		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000454502		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000402228		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000444864		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000284995		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000415684		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-intron	ENST00000432376	ENST00000475595		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12558110	+
intron-3CDS	ENST00000563298	ENST00000309664		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
intron-3CDS	ENST00000563298	ENST00000379709		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
5UTR-3CDS	ENST00000342932	ENST00000309664		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
5UTR-3CDS	ENST00000342932	ENST00000379709		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
5UTR-3CDS	ENST00000564923	ENST00000309664		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
5UTR-3CDS	ENST00000564923	ENST00000379709		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
5UTR-3CDS	ENST00000568649	ENST00000309664		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
5UTR-3CDS	ENST00000568649	ENST00000379709		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
intron-3CDS	ENST00000567336	ENST00000309664		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
intron-3CDS	ENST00000567336	ENST00000379709		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
intron-3CDS	ENST00000563393	ENST00000309664		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
intron-3CDS	ENST00000563393	ENST00000379709		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	PPCDC	chr15	75315967	+	LMAN1L	chr15	75105291	+
intron-5UTR	ENST00000493952	ENST00000163416		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
intron-5UTR	ENST00000493952	ENST00000355976		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
5CDS-5UTR	ENST00000338745	ENST00000163416		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
5CDS-5UTR	ENST00000338745	ENST00000355976		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
5CDS-5UTR	ENST00000417717	ENST00000163416		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
5CDS-5UTR	ENST00000417717	ENST00000355976		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
5CDS-5UTR	ENST00000454909	ENST00000163416		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
5CDS-5UTR	ENST00000454909	ENST00000355976		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
intron-5UTR	ENST00000475083	ENST00000163416		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
intron-5UTR	ENST00000475083	ENST00000355976		TCGA	RV	LIHC	TCGA-DD-A4NG-01A	SATB1	chr3	18435954	-	GOLGA5	chr14	93263753	+
intron-3UTR	ENST00000440909	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000440909	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000440909	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000448921	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000448921	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000448921	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000437397	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000437397	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000437397	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000355814	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000355814	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000355814	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000393087	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000393087	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393087	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000393088	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000393088	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393088	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000404814	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000404814	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404814	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000449399	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000449399	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000449399	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000402629	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000402629	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000402629	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000555289	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000555289	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000555289	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-A10U-01A	SERPINA1	chr14	94844686	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000306503	ENST00000406785		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000542756		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000403092		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000405901		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000402441		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000405269		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000542024		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000332839		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000406391		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
intron-intron	ENST00000306503	ENST00000408028		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000406785		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000542756		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000403092		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000405901		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000402441		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000405269		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000542024		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000332839		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000406391		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
5UTR-intron	ENST00000394861	ENST00000408028		TCGA	RV	LIHC	TCGA-DD-AAW0-01A	SOCS5	chr2	46926588	+	SLC8A1	chr2	40680489	-
3UTR-3CDS	ENST00000431692	ENST00000405201		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
3UTR-3CDS	ENST00000431692	ENST00000404621		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
3UTR-3CDS	ENST00000431692	ENST00000404121		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
3UTR-3CDS	ENST00000431692	ENST00000356219		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
3UTR-3CDS	ENST00000431692	ENST00000397355		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
3UTR-3CDS	ENST00000431692	ENST00000429285		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000223051	ENST00000405201		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000223051	ENST00000404621		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000223051	ENST00000404121		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000223051	ENST00000356219		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000223051	ENST00000397355		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000223051	ENST00000429285		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000462107	ENST00000405201		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000462107	ENST00000404621		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000462107	ENST00000404121		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000462107	ENST00000356219		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000462107	ENST00000397355		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
Frame-shit	ENST00000462107	ENST00000429285		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
In-frame	ENST00000544242	ENST00000405201		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
In-frame	ENST00000544242	ENST00000404621		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
In-frame	ENST00000544242	ENST00000404121		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
In-frame	ENST00000544242	ENST00000356219		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
In-frame	ENST00000544242	ENST00000397355		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
In-frame	ENST00000544242	ENST00000429285		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	TFR2	chr7	100224386	-	NCOR2	chr12	124848345	-
5CDS-intron	ENST00000492607	ENST00000371917		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000492607	ENST00000493140		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000326442	ENST00000371917		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000326442	ENST00000493140		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000447204	ENST00000371917		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000447204	ENST00000493140		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000434545	ENST00000371917		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000434545	ENST00000493140		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000429904	ENST00000371917		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000429904	ENST00000493140		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000450753	ENST00000371917		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000450753	ENST00000493140		TCGA	RV	LIHC	TCGA-DD-A11D-01A	TMEM176B	chr7	150488375	-	ARFGEF2	chr20	47615777	+
5CDS-5UTR	ENST00000358337	ENST00000265192		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
5CDS-intron	ENST00000358337	ENST00000511381		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000358337	ENST00000511706		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000358337	ENST00000394795		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000358337	ENST00000510080		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000520764	ENST00000265192		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
intron-intron	ENST00000520764	ENST00000511381		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000520764	ENST00000511706		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000520764	ENST00000394795		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000520764	ENST00000510080		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WDR55	chr5	140044688	+	PAIP2	chr5	138699448	+
intron-intron	ENST00000318560	ENST00000467100		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ABL1	chr9	133589842	+	FUBP3	chr9	133493184	+
intron-intron	ENST00000318560	ENST00000319725		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ABL1	chr9	133589842	+	FUBP3	chr9	133493184	+
5CDS-5UTR	ENST00000355366	ENST00000479481		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000355366	ENST00000370992		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000355366	ENST00000536831		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000355366	ENST00000315563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000355366	ENST00000414986		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000358531	ENST00000479481		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000358531	ENST00000370992		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000358531	ENST00000536831		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000358531	ENST00000315563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000358531	ENST00000414986		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
intron-5UTR	ENST00000487035	ENST00000479481		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
intron-5UTR	ENST00000487035	ENST00000370992		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
intron-5UTR	ENST00000487035	ENST00000536831		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
intron-5UTR	ENST00000487035	ENST00000315563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
intron-5UTR	ENST00000487035	ENST00000414986		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000371027	ENST00000479481		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000371027	ENST00000370992		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000371027	ENST00000536831		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000371027	ENST00000315563		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
5CDS-5UTR	ENST00000371027	ENST00000414986		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ARHGAP19	chr10	99016075	-	RRP12	chr10	99126889	-
Frame-shit	ENST00000398868	ENST00000341307		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
Frame-shit	ENST00000398868	ENST00000356000		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000398868	ENST00000538995		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000398868	ENST00000377819		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000398868	ENST00000339997		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000398868	ENST00000540798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000398868	ENST00000537981		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000398868	ENST00000354497		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
Frame-shit	ENST00000332645	ENST00000341307		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
Frame-shit	ENST00000332645	ENST00000356000		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000332645	ENST00000538995		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000332645	ENST00000377819		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000332645	ENST00000339997		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000332645	ENST00000540798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000332645	ENST00000537981		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000332645	ENST00000354497		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
In-frame	ENST00000538786	ENST00000341307		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
In-frame	ENST00000538786	ENST00000356000		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538786	ENST00000538995		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538786	ENST00000377819		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538786	ENST00000339997		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538786	ENST00000540798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538786	ENST00000537981		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538786	ENST00000354497		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-3CDS	ENST00000535789	ENST00000341307		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-3CDS	ENST00000535789	ENST00000356000		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-intron	ENST00000535789	ENST00000538995		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-intron	ENST00000535789	ENST00000377819		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-intron	ENST00000535789	ENST00000339997		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-intron	ENST00000535789	ENST00000540798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-intron	ENST00000535789	ENST00000537981		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
intron-intron	ENST00000535789	ENST00000354497		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ATL3	chr11	63426233	-	RTN3	chr11	63517463	+
5CDS-5UTR	ENST00000263026	ENST00000389397		TCGA	RV	LIHC	TCGA-G3-AAV1-01A	EEF2K	chr16	22237296	+	VWA3A	chr16	22157557	+
5CDS-5UTR	ENST00000263026	ENST00000389398		TCGA	RV	LIHC	TCGA-G3-AAV1-01A	EEF2K	chr16	22237296	+	VWA3A	chr16	22157557	+
5CDS-intron	ENST00000263026	ENST00000563755		TCGA	RV	LIHC	TCGA-G3-AAV1-01A	EEF2K	chr16	22237296	+	VWA3A	chr16	22157557	+
intron-5UTR	ENST00000561791	ENST00000389397		TCGA	RV	LIHC	TCGA-G3-AAV1-01A	EEF2K	chr16	22237296	+	VWA3A	chr16	22157557	+
intron-5UTR	ENST00000561791	ENST00000389398		TCGA	RV	LIHC	TCGA-G3-AAV1-01A	EEF2K	chr16	22237296	+	VWA3A	chr16	22157557	+
intron-intron	ENST00000561791	ENST00000563755		TCGA	RV	LIHC	TCGA-G3-AAV1-01A	EEF2K	chr16	22237296	+	VWA3A	chr16	22157557	+
In-frame	ENST00000263253	ENST00000216225		TCGA	RV	LIHC	TCGA-DD-A73F-01A	EP300	chr22	41551117	+	RBX1	chr22	41363803	+
5CDS-5UTR	ENST00000381340	ENST00000375784		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000381340	ENST00000375779		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000381340	ENST00000375780		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000381340	ENST00000395892		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000457485		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000423804		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000447369		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000447338		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000422167		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000438708		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000431921		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000415179		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000418285		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000423055		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000442045		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000435242		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000400052		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000383404		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000383405		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000400058		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000456863		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000434202		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000420458		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000433916		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000425464		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000423143		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000438750		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000381340	ENST00000451546		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-5UTR	ENST00000545902	ENST00000375784		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-5UTR	ENST00000545902	ENST00000375779		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-5UTR	ENST00000545902	ENST00000375780		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-5UTR	ENST00000545902	ENST00000395892		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000457485		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000423804		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000447369		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000447338		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000422167		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000438708		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000431921		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000415179		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000418285		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000423055		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000442045		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000435242		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000400052		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000383404		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000383405		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000400058		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000456863		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000434202		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000420458		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000433916		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000425464		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000423143		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000438750		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
intron-intron	ENST00000545902	ENST00000451546		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000242737	ENST00000375784		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000242737	ENST00000375779		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000242737	ENST00000375780		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-5UTR	ENST00000242737	ENST00000395892		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000457485		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000423804		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000447369		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000447338		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000422167		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000438708		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000431921		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000415179		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000418285		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000423055		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000442045		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000435242		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000400052		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000383404		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000383405		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000400058		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000456863		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000434202		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000420458		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000433916		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000425464		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000423143		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000438750		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5CDS-intron	ENST00000242737	ENST00000451546		TCGA	RV	LIHC	TCGA-MI-A75I-01A	ITPR2	chr12	26943090	-	CLIC1	chr6	31704127	-
5UTR-3CDS	ENST00000421307	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000421307	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-3CDS	ENST00000354379	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000354379	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-3CDS	ENST00000336686	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000336686	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-3CDS	ENST00000421276	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000421276	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-3CDS	ENST00000396428	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000396428	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-3CDS	ENST00000440230	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000440230	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-3CDS	ENST00000490597	ENST00000409792		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
5UTR-intron	ENST00000490597	ENST00000492397		TCGA	RV	LIHC	TCGA-CC-5258-01A	LRRFIP2	chr3	37216030	-	SETD2	chr3	47088111	-
In-frame	ENST00000375608	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375608	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375608	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375608	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375608	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375608	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000442652	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000442652	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000442652	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000442652	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000442652	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000442652	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375604	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375604	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375604	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375604	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375604	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375604	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000397030	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000397030	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397030	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397030	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397030	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397030	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000535094	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000535094	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000535094	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000535094	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000535094	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000535094	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000421756	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000421756	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000421756	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000421756	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000421756	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000421756	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375601	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375601	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375601	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375601	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375601	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375601	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-3CDS	ENST00000397036	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-3CDS	ENST00000397036	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397036	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397036	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397036	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397036	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000434480	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000434480	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000434480	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000434480	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000434480	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000434480	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000423482	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000423482	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000423482	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000423482	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000423482	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000423482	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375597	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000375597	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375597	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375597	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375597	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000375597	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000397024	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
In-frame	ENST00000397024	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397024	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397024	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397024	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5CDS-intron	ENST00000397024	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-3CDS	ENST00000480321	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-3CDS	ENST00000480321	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000480321	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000480321	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000480321	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000480321	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-3CDS	ENST00000397021	ENST00000357389		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-3CDS	ENST00000397021	ENST00000327773		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397021	ENST00000476291		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397021	ENST00000418959		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397021	ENST00000450766		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
intron-intron	ENST00000397021	ENST00000355761		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114542823	-
5UTR-3CDS	ENST00000406164	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
5UTR-3CDS	ENST00000406164	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
5UTR-3CDS	ENST00000406824	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
5UTR-3CDS	ENST00000406824	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000339837	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000339837	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000413939	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000413939	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000296202	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000296202	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000511444	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000511444	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000512391	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000512391	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000514703	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
Frame-shit	ENST00000514703	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000507242	ENST00000392455		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000507242	ENST00000392456		TCGA	RV	LIHC	TCGA-BC-A10W-01A	NMNAT3	chr3	139346458	-	CCDC50	chr3	191074877	+
intron-5UTR	ENST00000368465	ENST00000486869		TCGA	RV	LIHC	TCGA-UB-A7MC-01A	PBXIP1	chr1	154926147	-	GBAP1	chr1	155187840	-
5CDS-5UTR	ENST00000368463	ENST00000486869		TCGA	RV	LIHC	TCGA-UB-A7MC-01A	PBXIP1	chr1	154926147	-	GBAP1	chr1	155187840	-
intron-5UTR	ENST00000539880	ENST00000486869		TCGA	RV	LIHC	TCGA-UB-A7MC-01A	PBXIP1	chr1	154926147	-	GBAP1	chr1	155187840	-
intron-5UTR	ENST00000542459	ENST00000486869		TCGA	RV	LIHC	TCGA-UB-A7MC-01A	PBXIP1	chr1	154926147	-	GBAP1	chr1	155187840	-
5CDS-5UTR	ENST00000368460	ENST00000486869		TCGA	RV	LIHC	TCGA-UB-A7MC-01A	PBXIP1	chr1	154926147	-	GBAP1	chr1	155187840	-
5UTR-5UTR	ENST00000498553	ENST00000486869		TCGA	RV	LIHC	TCGA-UB-A7MC-01A	PBXIP1	chr1	154926147	-	GBAP1	chr1	155187840	-
Frame-shit	ENST00000296440	ENST00000420764		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000296440	ENST00000358747		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000296440	ENST00000395550		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000296440	ENST00000383733		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000296440	ENST00000337000		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000296440	ENST00000455886		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000296440	ENST00000482282		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358459	ENST00000420764		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358459	ENST00000358747		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358459	ENST00000395550		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358459	ENST00000383733		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358459	ENST00000337000		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358459	ENST00000455886		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000358459	ENST00000482282		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358536	ENST00000420764		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358536	ENST00000358747		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358536	ENST00000395550		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358536	ENST00000383733		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358536	ENST00000337000		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
In-frame	ENST00000358536	ENST00000455886		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000358536	ENST00000482282		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000448774	ENST00000420764		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000448774	ENST00000358747		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000448774	ENST00000395550		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000448774	ENST00000383733		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000448774	ENST00000337000		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000448774	ENST00000455886		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-intron	ENST00000448774	ENST00000482282		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000456774	ENST00000420764		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000456774	ENST00000358747		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000456774	ENST00000395550		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000456774	ENST00000383733		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000456774	ENST00000337000		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000456774	ENST00000455886		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000456774	ENST00000482282		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000465117	ENST00000420764		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000465117	ENST00000358747		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000465117	ENST00000395550		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000465117	ENST00000383733		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000465117	ENST00000337000		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000465117	ENST00000455886		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
intron-intron	ENST00000465117	ENST00000482282		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	PLXNB1	chr3	48460986	-	SLC26A6	chr3	48667144	-
5CDS-5UTR	ENST00000422945	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000422945	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000422945	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000556068	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000556068	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-3UTR	ENST00000556068	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000554442	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000554442	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-3UTR	ENST00000554442	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000328724	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000328724	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000328724	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000350249	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000350249	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000350249	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000445439	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000445439	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000445439	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000334743	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000334743	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000334743	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000557095	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000557095	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000557095	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000556260	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000556260	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-3UTR	ENST00000556260	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000556946	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000556946	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-3UTR	ENST00000556946	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000557714	ENST00000373602		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-5UTR	ENST00000557714	ENST00000421922		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
intron-3UTR	ENST00000557714	ENST00000483009		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	PPP2R5C	chr14	102360897	+	CCDC28B	chr1	32667514	+
5UTR-3CDS	ENST00000538644	ENST00000345617		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-3CDS	ENST00000538644	ENST00000543185		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-intron	ENST00000538644	ENST00000541256		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-intron	ENST00000538644	ENST00000553145		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
In-frame	ENST00000264601	ENST00000345617		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
In-frame	ENST00000264601	ENST00000543185		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5CDS-intron	ENST00000264601	ENST00000541256		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5CDS-intron	ENST00000264601	ENST00000553145		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-3CDS	ENST00000409576	ENST00000345617		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-3CDS	ENST00000409576	ENST00000543185		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-intron	ENST00000409576	ENST00000541256		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-intron	ENST00000409576	ENST00000553145		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-3CDS	ENST00000409822	ENST00000345617		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-3CDS	ENST00000409822	ENST00000543185		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-intron	ENST00000409822	ENST00000541256		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
intron-intron	ENST00000409822	ENST00000553145		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-3CDS	ENST00000416106	ENST00000345617		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-3CDS	ENST00000416106	ENST00000543185		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-intron	ENST00000416106	ENST00000541256		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5UTR-intron	ENST00000416106	ENST00000553145		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB17	chr2	238494641	-	HDAC4	chr2	239976529	-
5CDS-5UTR	ENST00000310653	ENST00000336898		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000310653	ENST00000376282		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000310653	ENST00000529095		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000310653	ENST00000526177		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000310653	ENST00000533784		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000310653	ENST00000529721		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000310653	ENST00000533805		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000310653	ENST00000443276		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000336083	ENST00000336898		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000336083	ENST00000376282		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000336083	ENST00000529095		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000336083	ENST00000526177		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000336083	ENST00000533784		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000336083	ENST00000529721		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000336083	ENST00000533805		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000336083	ENST00000443276		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-5UTR	ENST00000536566	ENST00000336898		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-5UTR	ENST00000536566	ENST00000376282		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-5UTR	ENST00000536566	ENST00000529095		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-intron	ENST00000536566	ENST00000526177		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-intron	ENST00000536566	ENST00000533784		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-5UTR	ENST00000536566	ENST00000529721		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-intron	ENST00000536566	ENST00000533805		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
intron-intron	ENST00000536566	ENST00000443276		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000541588	ENST00000336898		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000541588	ENST00000376282		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000541588	ENST00000529095		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000541588	ENST00000526177		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000541588	ENST00000533784		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000541588	ENST00000529721		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000541588	ENST00000533805		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-intron	ENST00000541588	ENST00000443276		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	RAB6A	chr11	73471611	-	GDPD5	chr11	75201365	-
5CDS-5UTR	ENST00000202677	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RALGAPA2	chr20	20610007	-	ACSM1	chr16	20696725	-
5CDS-5UTR	ENST00000202677	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RALGAPA2	chr20	20610007	-	ACSM1	chr16	20696725	-
5CDS-5UTR	ENST00000202677	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RALGAPA2	chr20	20610007	-	ACSM1	chr16	20696725	-
intron-5UTR	ENST00000495793	ENST00000219151		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RALGAPA2	chr20	20610007	-	ACSM1	chr16	20696725	-
intron-5UTR	ENST00000495793	ENST00000307493		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RALGAPA2	chr20	20610007	-	ACSM1	chr16	20696725	-
intron-5UTR	ENST00000495793	ENST00000520010		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RALGAPA2	chr20	20610007	-	ACSM1	chr16	20696725	-
intron-5UTR	ENST00000379933	ENST00000264870		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	RREB1	chr6	7108293	+	F13A1	chr6	6318915	-
5UTR-5UTR	ENST00000379938	ENST00000264870		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	RREB1	chr6	7108293	+	F13A1	chr6	6318915	-
5UTR-5UTR	ENST00000334984	ENST00000264870		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	RREB1	chr6	7108293	+	F13A1	chr6	6318915	-
5UTR-5UTR	ENST00000349384	ENST00000264870		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	RREB1	chr6	7108293	+	F13A1	chr6	6318915	-
Frame-shit	ENST00000262158	ENST00000442713		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
Frame-shit	ENST00000262158	ENST00000269445		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000262158	ENST00000584977		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000262158	ENST00000578396		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
Frame-shit	ENST00000591805	ENST00000442713		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
Frame-shit	ENST00000591805	ENST00000269445		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000591805	ENST00000584977		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000591805	ENST00000578396		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
Frame-shit	ENST00000589634	ENST00000442713		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
Frame-shit	ENST00000589634	ENST00000269445		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000589634	ENST00000584977		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5CDS-intron	ENST00000589634	ENST00000578396		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5UTR-3CDS	ENST00000585986	ENST00000442713		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5UTR-3CDS	ENST00000585986	ENST00000269445		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5UTR-intron	ENST00000585986	ENST00000584977		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
5UTR-intron	ENST00000585986	ENST00000578396		TCGA	RV	LIHC	TCGA-DD-A73F-01A	SMAD7	chr18	46468851	-	DYM	chr18	46645296	-
Frame-shit	ENST00000344204	ENST00000509156		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000344204	ENST00000306938		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000344204	ENST00000399534		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000344204	ENST00000505606		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000344204	ENST00000509634		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
5CDS-intron	ENST00000344204	ENST00000509931		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
5CDS-intron	ENST00000344204	ENST00000499046		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000537187	ENST00000509156		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000537187	ENST00000306938		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000537187	ENST00000399534		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000537187	ENST00000505606		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
Frame-shit	ENST00000537187	ENST00000509634		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
5CDS-intron	ENST00000537187	ENST00000509931		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
5CDS-intron	ENST00000537187	ENST00000499046		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000509967	ENST00000509156		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000509967	ENST00000306938		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000509967	ENST00000399534		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000509967	ENST00000505606		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000509967	ENST00000509634		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-intron	ENST00000509967	ENST00000509931		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-intron	ENST00000509967	ENST00000499046		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000515710	ENST00000509156		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000515710	ENST00000306938		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000515710	ENST00000399534		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000515710	ENST00000505606		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000515710	ENST00000509634		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-intron	ENST00000515710	ENST00000509931		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-intron	ENST00000515710	ENST00000499046		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000344135	ENST00000509156		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000344135	ENST00000306938		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000344135	ENST00000399534		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000344135	ENST00000505606		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-3CDS	ENST00000344135	ENST00000509634		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-intron	ENST00000344135	ENST00000509931		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
intron-intron	ENST00000344135	ENST00000499046		TCGA	RV	LIHC	TCGA-CC-5264-01A	TRIO	chr5	14143991	+	ZNF131	chr5	43161351	+
5CDS-intron	ENST00000327435	ENST00000446765		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ADI1	chr2	3523139	-	DPY30	chr2	32264561	-
5CDS-5UTR	ENST00000327435	ENST00000342166		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ADI1	chr2	3523139	-	DPY30	chr2	32264561	-
5CDS-5UTR	ENST00000327435	ENST00000295066		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ADI1	chr2	3523139	-	DPY30	chr2	32264561	-
intron-intron	ENST00000382093	ENST00000446765		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ADI1	chr2	3523139	-	DPY30	chr2	32264561	-
intron-5UTR	ENST00000382093	ENST00000342166		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ADI1	chr2	3523139	-	DPY30	chr2	32264561	-
intron-5UTR	ENST00000382093	ENST00000295066		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ADI1	chr2	3523139	-	DPY30	chr2	32264561	-
In-frame	ENST00000339594	ENST00000223368		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72966572	-
In-frame	ENST00000339594	ENST00000411832		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72966572	-
5CDS-5UTR	ENST00000339594	ENST00000482231		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72966572	-
In-frame	ENST00000404251	ENST00000223368		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72966572	-
In-frame	ENST00000404251	ENST00000411832		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72966572	-
5CDS-5UTR	ENST00000404251	ENST00000482231		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72966572	-
In-frame	ENST00000533820	ENST00000377185		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAPN1	chr11	64953809	+	SPDYC	chr11	64939717	+
In-frame	ENST00000533129	ENST00000377185		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAPN1	chr11	64953809	+	SPDYC	chr11	64939717	+
In-frame	ENST00000524773	ENST00000377185		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAPN1	chr11	64953809	+	SPDYC	chr11	64939717	+
In-frame	ENST00000279247	ENST00000377185		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAPN1	chr11	64953809	+	SPDYC	chr11	64939717	+
intron-3CDS	ENST00000527469	ENST00000377185		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAPN1	chr11	64953809	+	SPDYC	chr11	64939717	+
In-frame	ENST00000527323	ENST00000377185		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAPN1	chr11	64953809	+	SPDYC	chr11	64939717	+
Frame-shit	ENST00000470610	ENST00000361136		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000470610	ENST00000361875		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
5CDS-intron	ENST00000470610	ENST00000492828		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000389672	ENST00000361136		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000389672	ENST00000361875		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
5CDS-intron	ENST00000389672	ENST00000492828		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000542517	ENST00000361136		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000542517	ENST00000361875		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
5CDS-intron	ENST00000542517	ENST00000492828		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000514100	ENST00000361136		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000514100	ENST00000361875		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-intron	ENST00000514100	ENST00000492828		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000502694	ENST00000361136		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000502694	ENST00000361875		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-intron	ENST00000502694	ENST00000492828		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000442602	ENST00000361136		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000442602	ENST00000361875		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-intron	ENST00000442602	ENST00000492828		TCGA	RV	LIHC	TCGA-DD-AA3A-01A	EPHA6	chr3	96585733	+	TSC22D2	chr3	150174863	+
intron-intron	ENST00000302053	ENST00000371754		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000302053	ENST00000469991		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000302053	ENST00000371752		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000302053	ENST00000396105		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000403106	ENST00000371754		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000403106	ENST00000469991		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000403106	ENST00000371752		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000403106	ENST00000396105		TCGA	RV	LIHC	TCGA-DD-AADP-01A	FGA	chr4	155506412	-	ZNFX1	chr20	47863418	-
intron-3CDS	ENST00000514455	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000514455	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000511566	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000511566	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000376817	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000376817	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000512805	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000512805	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000504726	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000504726	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000511900	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000511900	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000456394	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000456394	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000505461	ENST00000233242		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000505461	ENST00000399256		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
5CDS-5UTR	ENST00000361720	ENST00000320567		TCGA	RV	LIHC	TCGA-DD-AADV-01A	GPATCH3	chr1	27219880	-	C1orf172	chr1	27278903	-
Frame-shit	ENST00000396081	ENST00000535891		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000396081	ENST00000258749		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000396081	ENST00000431169		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000396081	ENST00000538464		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
5CDS-5UTR	ENST00000396081	ENST00000491444		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000535891		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000258749		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000431169		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
Frame-shit	ENST00000311350	ENST00000538464		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
5CDS-5UTR	ENST00000311350	ENST00000491444		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000535891		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000258749		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000431169		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-3CDS	ENST00000426180	ENST00000538464		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
intron-5UTR	ENST00000426180	ENST00000491444		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	HERPUD2	chr7	35733794	-	AOAH	chr7	36580097	-
5UTR-3CDS	ENST00000264501	ENST00000274026		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000455637	ENST00000274026		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000388738	ENST00000274026		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000495260	ENST00000274026		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
In-frame	ENST00000445937	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000445937	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000445937	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000445937	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000445937	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000531443	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000531443	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000531443	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000531443	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000531443	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000517566	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000517566	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000517566	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000517566	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000517566	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000452423	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000452423	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000452423	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000452423	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000452423	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000442977	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000442977	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000442977	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000442977	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000442977	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521963	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521963	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000521963	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000521963	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000521963	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000312046	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000312046	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000312046	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000312046	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
5CDS-intron	ENST00000312046	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000449762	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000449762	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000449762	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000449762	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000449762	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000297447	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000297447	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000297447	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000297447	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000297447	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521592	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521592	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000521592	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000521592	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000521592	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000497705	ENST00000397752		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-3CDS	ENST00000497705	ENST00000318493		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000497705	ENST00000436117		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000497705	ENST00000495962		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
intron-intron	ENST00000497705	ENST00000539704		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107726213	+	MET	chr7	116411552	+
In-frame	ENST00000329399	ENST00000371227		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000371249		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000306402		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000353505		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000371246		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000347291		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000393949		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000371247		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000607232		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000371245		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000361941		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000277982		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000354106		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000371239		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
In-frame	ENST00000329399	ENST00000371241		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5CDS-5UTR	ENST00000329399	ENST00000474353		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371227		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371249		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000306402		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000353505		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371246		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000347291		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000393949		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371247		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000607232		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371245		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000361941		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000277982		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000354106		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371239		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000477757	ENST00000371241		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-5UTR	ENST00000477757	ENST00000474353		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97144042	-
5UTR-3CDS	ENST00000373839	ENST00000253063		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PHACTR4	chr1	28696336	+	SESN2	chr1	28595694	+
3UTR-3CDS	ENST00000493669	ENST00000253063		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PHACTR4	chr1	28696336	+	SESN2	chr1	28595694	+
intron-3CDS	ENST00000373836	ENST00000253063		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	PHACTR4	chr1	28696336	+	SESN2	chr1	28595694	+
5UTR-intron	ENST00000431726	ENST00000310351		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5UTR-intron	ENST00000431726	ENST00000488653		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5UTR-intron	ENST00000431726	ENST00000485727		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5UTR-intron	ENST00000431726	ENST00000489746		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5UTR-intron	ENST00000431726	ENST00000433542		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5UTR-intron	ENST00000431726	ENST00000483247		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000265562	ENST00000310351		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000265562	ENST00000488653		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000265562	ENST00000485727		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000265562	ENST00000489746		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000265562	ENST00000433542		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5CDS-intron	ENST00000265562	ENST00000483247		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	PTPN23	chr3	47437707	+	CCDC14	chr3	123616460	-
5UTR-3CDS	ENST00000353383	ENST00000356554		TCGA	RV	LIHC	TCGA-CC-5260-01A	RAI1	chr17	17585107	+	MAN1A2	chr1	117944808	+
5UTR-intron	ENST00000353383	ENST00000482811		TCGA	RV	LIHC	TCGA-CC-5260-01A	RAI1	chr17	17585107	+	MAN1A2	chr1	117944808	+
3UTR-3CDS	ENST00000489697	ENST00000356554		TCGA	RV	LIHC	TCGA-CC-5260-01A	RAI1	chr17	17585107	+	MAN1A2	chr1	117944808	+
3UTR-intron	ENST00000489697	ENST00000482811		TCGA	RV	LIHC	TCGA-CC-5260-01A	RAI1	chr17	17585107	+	MAN1A2	chr1	117944808	+
intron-3CDS	ENST00000261641	ENST00000356554		TCGA	RV	LIHC	TCGA-CC-5260-01A	RAI1	chr17	17585107	+	MAN1A2	chr1	117944808	+
intron-intron	ENST00000261641	ENST00000482811		TCGA	RV	LIHC	TCGA-CC-5260-01A	RAI1	chr17	17585107	+	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000508628	ENST00000361193		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000508628	ENST00000411502		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000508628	ENST00000546047		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000571602		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000572725		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000361193		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000411502		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000546047		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000571602		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000572725		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000582970	ENST00000361193		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000582970	ENST00000411502		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000582970	ENST00000546047		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000571602		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000572725		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000361193		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000411502		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000546047		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000571602		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000572725		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000336301	ENST00000361193		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000336301	ENST00000411502		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
Frame-shit	ENST00000336301	ENST00000546047		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000571602		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000572725		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000361193		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000411502		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000546047		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000571602		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000572725		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78324196	+	SLC26A11	chr17	78225128	+
5CDS-5UTR	ENST00000312932	ENST00000399824		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000312932	ENST00000405659		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000312932	ENST00000338306		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000403484	ENST00000399824		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000403484	ENST00000405659		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000403484	ENST00000338306		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000405717	ENST00000399824		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000405717	ENST00000405659		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000405717	ENST00000338306		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000402592	ENST00000399824		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000402592	ENST00000405659		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
5CDS-5UTR	ENST00000402592	ENST00000338306		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
intron-5UTR	ENST00000459728	ENST00000399824		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
intron-5UTR	ENST00000459728	ENST00000405659		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
intron-5UTR	ENST00000459728	ENST00000338306		TCGA	RV	LIHC	TCGA-DD-AADL-01A	SEC14L2	chr22	30812392	+	CCDC157	chr22	30757950	+
intron-3CDS	ENST00000440909	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000440909	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000440909	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000440909	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000440909	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000448921	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000448921	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000448921	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000448921	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000437397	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000437397	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000437397	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000437397	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000355814	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000355814	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000355814	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000355814	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000393087	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000393087	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000393087	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000393087	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000393088	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-3UTR	ENST00000393088	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-3UTR	ENST00000393088	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
5CDS-3UTR	ENST00000393088	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000404814	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000404814	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000404814	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000404814	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000449399	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000449399	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000449399	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000449399	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000402629	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000402629	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000402629	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000402629	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000367042		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000354848		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000441839		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000322875		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000367041		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000358170		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000322918		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000361067		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000367047		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3CDS	ENST00000555289	ENST00000357714		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000555289	ENST00000469535		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000555289	ENST00000360212		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
intron-3UTR	ENST00000555289	ENST00000480003		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	SERPINA1	chr14	94844713	-	CD46	chr1	207940358	+
Frame-shit	ENST00000264930	ENST00000310581		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
In-frame	ENST00000264930	ENST00000296820		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264930	ENST00000334602		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264930	ENST00000508104		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000264930	ENST00000522877		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	SLC12A7	chr5	1111983	-	TERT	chr5	1282739	-
Frame-shit	ENST00000398637	ENST00000389221		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000398637	ENST00000508903		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000398637	ENST00000397462		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000398637	ENST00000391893		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000398637	ENST00000403703		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000398637	ENST00000248104		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000398637	ENST00000397464		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000398637	ENST00000402641		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000398637	ENST00000301712		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-5UTR	ENST00000398637	ENST00000503648		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
In-frame	ENST00000549049	ENST00000389221		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
In-frame	ENST00000549049	ENST00000508903		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
In-frame	ENST00000549049	ENST00000397462		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000549049	ENST00000391893		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000549049	ENST00000403703		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000549049	ENST00000248104		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000549049	ENST00000397464		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000549049	ENST00000402641		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000549049	ENST00000301712		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-5UTR	ENST00000549049	ENST00000503648		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000439706	ENST00000389221		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000439706	ENST00000508903		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000439706	ENST00000397462		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000439706	ENST00000391893		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000439706	ENST00000403703		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000439706	ENST00000248104		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000439706	ENST00000397464		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000439706	ENST00000402641		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000439706	ENST00000301712		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-5UTR	ENST00000439706	ENST00000503648		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000546893	ENST00000389221		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000546893	ENST00000508903		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
Frame-shit	ENST00000546893	ENST00000397462		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000546893	ENST00000391893		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000546893	ENST00000403703		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000546893	ENST00000248104		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000546893	ENST00000397464		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000546893	ENST00000402641		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000546893	ENST00000301712		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-5UTR	ENST00000546893	ENST00000503648		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-3CDS	ENST00000549633	ENST00000389221		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-3CDS	ENST00000549633	ENST00000508903		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-3CDS	ENST00000549633	ENST00000397462		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-intron	ENST00000549633	ENST00000391893		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-intron	ENST00000549633	ENST00000403703		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-intron	ENST00000549633	ENST00000248104		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-intron	ENST00000549633	ENST00000397464		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-intron	ENST00000549633	ENST00000402641		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-intron	ENST00000549633	ENST00000301712		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5UTR-5UTR	ENST00000549633	ENST00000503648		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
In-frame	ENST00000552197	ENST00000389221		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
In-frame	ENST00000552197	ENST00000508903		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
In-frame	ENST00000552197	ENST00000397462		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000552197	ENST00000391893		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000552197	ENST00000403703		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000552197	ENST00000248104		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000552197	ENST00000397464		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000552197	ENST00000402641		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-intron	ENST00000552197	ENST00000301712		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-5UTR	ENST00000552197	ENST00000503648		TCGA	RV	LIHC	TCGA-ED-A82E-01A	SLC38A1	chr12	46622936	-	UNKL	chr16	1453345	-
5CDS-3UTR	ENST00000304363	ENST00000340437		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000304363	ENST00000394888		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000304363	ENST00000439958		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-5UTR	ENST00000304363	ENST00000494016		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000304363	ENST00000448745		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-intron	ENST00000304363	ENST00000541963		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000401547	ENST00000340437		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000401547	ENST00000394888		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000401547	ENST00000439958		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-5UTR	ENST00000401547	ENST00000494016		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000401547	ENST00000448745		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-intron	ENST00000401547	ENST00000541963		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000405515	ENST00000340437		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000405515	ENST00000394888		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000405515	ENST00000439958		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-5UTR	ENST00000405515	ENST00000494016		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000405515	ENST00000448745		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-intron	ENST00000405515	ENST00000541963		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000402789	ENST00000340437		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000402789	ENST00000394888		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000402789	ENST00000439958		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-5UTR	ENST00000402789	ENST00000494016		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-3UTR	ENST00000402789	ENST00000448745		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
5CDS-intron	ENST00000402789	ENST00000541963		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
intron-3UTR	ENST00000402185	ENST00000340437		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
intron-3UTR	ENST00000402185	ENST00000394888		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
intron-3UTR	ENST00000402185	ENST00000439958		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
intron-5UTR	ENST00000402185	ENST00000494016		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
intron-3UTR	ENST00000402185	ENST00000448745		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
intron-intron	ENST00000402185	ENST00000541963		TCGA	RV	LIHC	TCGA-CC-5264-01A	SUV420H1	chr11	67947599	-	CPSF7	chr11	61172176	-
Frame-shit	ENST00000319006	ENST00000318562		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000319006	ENST00000533256		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000319006	ENST00000530636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000319006	ENST00000526198		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000319006	ENST00000534449		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000318562		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000533256		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000530636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000528097	ENST00000526198		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000528097	ENST00000534449		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000318562		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000533256		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000530636		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000532202	ENST00000526198		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000532202	ENST00000534449		TCGA	RV	LIHC	TCGA-UB-A7MA-01A	TALDO1	chr11	760253	+	EPS8L2	chr11	720062	+
In-frame	ENST00000373491	ENST00000274963		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TBC1D22B	chr6	37259133	+	FGD2	chr6	36982422	+
5UTR-3CDS	ENST00000258991	ENST00000318698		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
5UTR-3CDS	ENST00000258991	ENST00000566473		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
5UTR-intron	ENST00000258991	ENST00000574292		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
intron-3CDS	ENST00000583097	ENST00000318698		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
intron-3CDS	ENST00000583097	ENST00000566473		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
intron-intron	ENST00000583097	ENST00000574292		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
5UTR-3CDS	ENST00000584379	ENST00000318698		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
5UTR-3CDS	ENST00000584379	ENST00000566473		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
5UTR-intron	ENST00000584379	ENST00000574292		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
intron-3CDS	ENST00000581812	ENST00000318698		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
intron-3CDS	ENST00000581812	ENST00000566473		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
intron-intron	ENST00000581812	ENST00000574292		TCGA	RV	LIHC	TCGA-RC-A7SB-01A	TEX2	chr17	62340528	-	ANKFN1	chr17	54559717	+
3UTR-intron	ENST00000402696	ENST00000371917		TCGA	RV	LIHC	TCGA-ED-A459-01A	TF	chr3	133497635	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000402696	ENST00000493140		TCGA	RV	LIHC	TCGA-ED-A459-01A	TF	chr3	133497635	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000264998	ENST00000371917		TCGA	RV	LIHC	TCGA-ED-A459-01A	TF	chr3	133497635	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000264998	ENST00000493140		TCGA	RV	LIHC	TCGA-ED-A459-01A	TF	chr3	133497635	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000475382	ENST00000371917		TCGA	RV	LIHC	TCGA-ED-A459-01A	TF	chr3	133497635	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000475382	ENST00000493140		TCGA	RV	LIHC	TCGA-ED-A459-01A	TF	chr3	133497635	+	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000322954	ENST00000399448		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000322954	ENST00000447931		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000322954	ENST00000318974		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000322954	ENST00000456013		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
5CDS-3UTR	ENST00000322954	ENST00000539029		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000539319	ENST00000399448		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000539319	ENST00000447931		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000539319	ENST00000318974		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000539319	ENST00000456013		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
5CDS-3UTR	ENST00000539319	ENST00000539029		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000379983	ENST00000399448		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000379983	ENST00000447931		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000379983	ENST00000318974		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000379983	ENST00000456013		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
5CDS-3UTR	ENST00000379983	ENST00000539029		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000560441	ENST00000399448		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000560441	ENST00000447931		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000560441	ENST00000318974		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000560441	ENST00000456013		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
5CDS-3UTR	ENST00000560441	ENST00000539029		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
intron-3CDS	ENST00000559183	ENST00000399448		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
intron-3CDS	ENST00000559183	ENST00000447931		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
intron-3CDS	ENST00000559183	ENST00000318974		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
intron-3CDS	ENST00000559183	ENST00000456013		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
intron-3UTR	ENST00000559183	ENST00000539029		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	UACA	chr15	70987356	-	PTPN6	chr12	7069090	+
Frame-shit	ENST00000392738	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000392738	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000392738	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
Frame-shit	ENST00000500704	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000500704	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000500704	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
In-frame	ENST00000327681	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000327681	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000327681	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5UTR-3CDS	ENST00000539675	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5UTR-intron	ENST00000539675	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
5UTR-intron	ENST00000539675	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000369233	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000369233	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000369233	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000329966	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000329966	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000329966	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000472914	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000472914	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000472914	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000369232	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000369232	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000369232	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000369231	ENST00000369162		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000369231	ENST00000522650		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000369231	ENST00000369143		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	USP45	chr6	99912480	-	ASCC3	chr6	100988263	-
In-frame	ENST00000437048	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000437048	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000437048	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000437048	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000437048	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000574029	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000574029	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000574029	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000574029	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-5UTR	ENST00000574029	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000576149	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000576149	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000576149	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000576149	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
intron-5UTR	ENST00000576149	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000446250	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000446250	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000446250	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5UTR-3CDS	ENST00000446250	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5UTR-5UTR	ENST00000446250	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000291074	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000291074	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000291074	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000291074	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000291074	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000571805	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000571805	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000571805	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000571805	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000571805	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000401468	ENST00000544865		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000401468	ENST00000263073		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000401468	ENST00000354901		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
In-frame	ENST00000401468	ENST00000536871		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000401468	ENST00000573166		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	VPS53	chr17	600658	-	SMG6	chr17	1989195	-
Frame-shit	ENST00000309060	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000309060	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000309060	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-5UTR	ENST00000309060	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
Frame-shit	ENST00000540170	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000540170	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000540170	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-5UTR	ENST00000540170	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
In-frame	ENST00000559234	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000559234	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000559234	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-5UTR	ENST00000559234	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-3CDS	ENST00000557816	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000557816	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000557816	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-5UTR	ENST00000557816	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-3CDS	ENST00000558993	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000558993	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000558993	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-5UTR	ENST00000558993	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-3CDS	ENST00000544979	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000544979	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000544979	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-5UTR	ENST00000544979	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
Frame-shit	ENST00000560361	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000560361	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000560361	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-5UTR	ENST00000560361	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
In-frame	ENST00000432768	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000432768	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-intron	ENST00000432768	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
5CDS-5UTR	ENST00000432768	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-3CDS	ENST00000561291	ENST00000373233		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000561291	ENST00000309279		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-intron	ENST00000561291	ENST00000373222		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
intron-5UTR	ENST00000561291	ENST00000480022		TCGA	RV	LIHC	TCGA-DD-A73B-01A	ZHX3	chr20	39830697	-	CHD6	chr20	40034129	-
In-frame	ENST00000318602	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000318602	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000318602	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000318602	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000318602	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000542567	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
intron-intron	ENST00000542567	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
intron-intron	ENST00000542567	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
intron-intron	ENST00000542567	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
intron-intron	ENST00000542567	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A39W-01A	A2M	chr12	9220308	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000478253	ENST00000490882		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000429972		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000295956		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000358537		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000357272		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000348383		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000493452		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000478253	ENST00000419752		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-intron	ENST00000478253	ENST00000484981		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000490882		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000429972		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000295956		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000358537		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000357272		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000348383		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000493452		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-3CDS	ENST00000295962	ENST00000419752		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
5UTR-intron	ENST00000295962	ENST00000484981		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000490882		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000429972		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000295956		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000358537		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000357272		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000348383		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000493452		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000419752		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
intron-intron	ENST00000480457	ENST00000484981		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	ABHD6	chr3	58223643	+	FLNB	chr3	58104599	+
In-frame	ENST00000252699	ENST00000355481		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000252699	ENST00000360985		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000252699	ENST00000359596		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000424234	ENST00000355481		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000424234	ENST00000360985		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000424234	ENST00000359596		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000390009	ENST00000355481		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000390009	ENST00000360985		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
In-frame	ENST00000390009	ENST00000359596		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
intron-3CDS	ENST00000497637	ENST00000355481		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
intron-3CDS	ENST00000497637	ENST00000360985		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
intron-3CDS	ENST00000497637	ENST00000359596		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	ACTN4	chr19	39138547	+	RYR1	chr19	39051753	+
5CDS-5UTR	ENST00000351293	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000351293	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322635	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322635	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000394762	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000394762	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000423381	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000423381	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322680	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000322680	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000305762	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000305762	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000372765	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000372765	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5UTR-5UTR	ENST00000472912	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5UTR-5UTR	ENST00000472912	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000444854	ENST00000409178		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
5CDS-5UTR	ENST00000444854	ENST00000412307		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	CAMK2G	chr10	75601927	-	C10orf55	chr10	75676399	-
In-frame	ENST00000217402	ENST00000342704		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
In-frame	ENST00000217402	ENST00000375279		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000344201		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000397798		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000346541		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000397800		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000492345		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000359606		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-3UTR	ENST00000217402	ENST00000491618		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
5CDS-intron	ENST00000217402	ENST00000543126		TCGA	RV	LIHC	TCGA-FV-A496-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32224446	+
intron-3CDS	ENST00000540367	ENST00000253925		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000540367	ENST00000389547		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-intron	ENST00000540367	ENST00000530548		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
5UTR-3CDS	ENST00000376618	ENST00000253925		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
5UTR-3CDS	ENST00000376618	ENST00000389547		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
5UTR-intron	ENST00000376618	ENST00000530548		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
5UTR-3CDS	ENST00000265641	ENST00000253925		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
5UTR-3CDS	ENST00000265641	ENST00000389547		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
5UTR-intron	ENST00000265641	ENST00000530548		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000539743	ENST00000253925		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000539743	ENST00000389547		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-intron	ENST00000539743	ENST00000530548		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000537756	ENST00000253925		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000537756	ENST00000389547		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-intron	ENST00000537756	ENST00000530548		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000538994	ENST00000253925		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-3CDS	ENST00000538994	ENST00000389547		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
intron-intron	ENST00000538994	ENST00000530548		TCGA	RV	LIHC	TCGA-DD-A4ND-01A	CPT1A	chr11	68609243	-	PPFIA1	chr11	70170508	+
Frame-shit	ENST00000398970	ENST00000324896		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000398970	ENST00000353920		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000398970	ENST00000346152		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000398970	ENST00000416070		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000398970	ENST00000443166		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
5CDS-intron	ENST00000398970	ENST00000438130		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000300574	ENST00000324896		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000300574	ENST00000353920		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000300574	ENST00000346152		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000300574	ENST00000416070		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000300574	ENST00000443166		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
5CDS-intron	ENST00000300574	ENST00000438130		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000574295	ENST00000324896		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000574295	ENST00000353920		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000574295	ENST00000346152		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000574295	ENST00000416070		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
Frame-shit	ENST00000574295	ENST00000443166		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
5CDS-intron	ENST00000574295	ENST00000438130		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
intron-3CDS	ENST00000572145	ENST00000324896		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
intron-3CDS	ENST00000572145	ENST00000353920		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
intron-3CDS	ENST00000572145	ENST00000346152		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
intron-3CDS	ENST00000572145	ENST00000416070		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
intron-3CDS	ENST00000572145	ENST00000443166		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
intron-intron	ENST00000572145	ENST00000438130		TCGA	RV	LIHC	TCGA-BC-A10T-01A	CRK	chr17	1359171	-	GTF2I	chr7	74113291	+
In-frame	ENST00000433197	ENST00000258991		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
In-frame	ENST00000433197	ENST00000583097		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
In-frame	ENST00000433197	ENST00000584379		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
5CDS-intron	ENST00000433197	ENST00000581812		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
5UTR-3CDS	ENST00000577567	ENST00000258991		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
5UTR-3CDS	ENST00000577567	ENST00000583097		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
5UTR-3CDS	ENST00000577567	ENST00000584379		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
5UTR-intron	ENST00000577567	ENST00000581812		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
intron-3CDS	ENST00000606895	ENST00000258991		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
intron-3CDS	ENST00000606895	ENST00000583097		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
intron-3CDS	ENST00000606895	ENST00000584379		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
intron-intron	ENST00000606895	ENST00000581812		TCGA	RV	LIHC	TCGA-CC-A7IJ-01A	ERN1	chr17	62157022	-	TEX2	chr17	62272455	-
Frame-shit	ENST00000243498	ENST00000395169		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000243498	ENST00000359221		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000243498	ENST00000361569		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000243498	ENST00000395166		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000243498	ENST00000449047		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000243498	ENST00000395161		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000243498	ENST00000513839		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000243498	ENST00000395157		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000243498	ENST00000395160		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-3CDS	ENST00000509980	ENST00000395169		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-3CDS	ENST00000509980	ENST00000359221		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-3CDS	ENST00000509980	ENST00000361569		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-3CDS	ENST00000509980	ENST00000395166		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-3CDS	ENST00000509980	ENST00000449047		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-3CDS	ENST00000509980	ENST00000395161		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-intron	ENST00000509980	ENST00000513839		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-intron	ENST00000509980	ENST00000395157		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
3UTR-intron	ENST00000509980	ENST00000395160		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000379663	ENST00000395169		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000379663	ENST00000359221		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000379663	ENST00000361569		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000379663	ENST00000395166		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000379663	ENST00000449047		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000379663	ENST00000395161		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000379663	ENST00000513839		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000379663	ENST00000395157		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000379663	ENST00000395160		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000512454	ENST00000395169		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000512454	ENST00000359221		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000512454	ENST00000361569		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000512454	ENST00000395166		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000512454	ENST00000449047		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
Frame-shit	ENST00000512454	ENST00000395161		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000512454	ENST00000513839		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000512454	ENST00000395157		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
5CDS-intron	ENST00000512454	ENST00000395160		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	EXOSC9	chr4	122728777	+	MAPK10	chr4	86952584	-
In-frame	ENST00000296933	ENST00000368559		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000296933	ENST00000368553		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000296933	ENST00000271854		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000265094	ENST00000368559		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000265094	ENST00000368553		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000265094	ENST00000271854		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000393802	ENST00000368559		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000393802	ENST00000368553		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
In-frame	ENST00000393802	ENST00000271854		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000425623	ENST00000368559		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000425623	ENST00000368553		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000425623	ENST00000271854		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000522891	ENST00000368559		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000522891	ENST00000368553		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000522891	ENST00000271854		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171433462	-	NUP210L	chr1	154000073	-
Frame-shit	ENST00000381340	ENST00000378454		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	ITPR2	chr12	26780966	-	DCDC2	chr6	24278439	-
5CDS-intron	ENST00000381340	ENST00000378450		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	ITPR2	chr12	26780966	-	DCDC2	chr6	24278439	-
5UTR-3CDS	ENST00000545902	ENST00000378454		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	ITPR2	chr12	26780966	-	DCDC2	chr6	24278439	-
5UTR-intron	ENST00000545902	ENST00000378450		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	ITPR2	chr12	26780966	-	DCDC2	chr6	24278439	-
intron-3CDS	ENST00000242737	ENST00000378454		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	ITPR2	chr12	26780966	-	DCDC2	chr6	24278439	-
intron-intron	ENST00000242737	ENST00000378450		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	ITPR2	chr12	26780966	-	DCDC2	chr6	24278439	-
Frame-shit	ENST00000521689	ENST00000445593		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000521689	ENST00000521545		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000254898	ENST00000445593		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000254898	ENST00000521545		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000524308	ENST00000445593		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000524308	ENST00000521545		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000522025	ENST00000445593		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000522025	ENST00000521545		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000520016	ENST00000445593		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000520016	ENST00000521545		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518238	ENST00000445593		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
intron-3CDS	ENST00000518238	ENST00000521545		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	MATN2	chr8	99019829	+	LAPTM4B	chr8	98863625	+
Frame-shit	ENST00000262370	ENST00000262375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000262370	ENST00000355296		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000262370	ENST00000431375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000262370	ENST00000572139		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
Frame-shit	ENST00000415496	ENST00000262375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000415496	ENST00000355296		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000415496	ENST00000431375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000415496	ENST00000572139		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
Frame-shit	ENST00000399577	ENST00000262375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000399577	ENST00000355296		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000399577	ENST00000431375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000399577	ENST00000572139		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
Frame-shit	ENST00000588994	ENST00000262375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000588994	ENST00000355296		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000588994	ENST00000431375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000588994	ENST00000572139		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
Frame-shit	ENST00000586183	ENST00000262375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000586183	ENST00000355296		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000586183	ENST00000431375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
5CDS-intron	ENST00000586183	ENST00000572139		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
intron-3CDS	ENST00000588015	ENST00000262375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
intron-intron	ENST00000588015	ENST00000355296		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
intron-intron	ENST00000588015	ENST00000431375		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
intron-intron	ENST00000588015	ENST00000572139		TCGA	RV	LIHC	TCGA-DD-A11A-01A	MGRN1	chr16	4727573	+	DNAJA3	chr16	4504812	+
Frame-shit	ENST00000403721	ENST00000234310		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
Frame-shit	ENST00000403721	ENST00000409752		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
Frame-shit	ENST00000403721	ENST00000409377		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
Frame-shit	ENST00000263629	ENST00000234310		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
Frame-shit	ENST00000263629	ENST00000409752		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
Frame-shit	ENST00000263629	ENST00000409377		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
In-frame	ENST00000394600	ENST00000234310		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
In-frame	ENST00000394600	ENST00000409752		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
In-frame	ENST00000394600	ENST00000409377		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
5UTR-3CDS	ENST00000446660	ENST00000234310		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
5UTR-3CDS	ENST00000446660	ENST00000409752		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
5UTR-3CDS	ENST00000446660	ENST00000409377		TCGA	RV	LIHC	TCGA-CC-A3MB-01A	MTIF2	chr2	55489452	-	PPP3R1	chr2	68415822	-
5CDS-intron	ENST00000589123	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000589123	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000589123	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000589123	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000346156	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000346156	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000346156	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000346156	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000395111	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000395111	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000395111	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000395111	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000586919	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000586919	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000586919	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000586919	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000341919	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000341919	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000341919	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000341919	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000590282	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000590282	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000590282	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000590282	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000443272	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-intron	ENST00000443272	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000443272	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
5CDS-5UTR	ENST00000443272	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
intron-intron	ENST00000588839	ENST00000591708		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
intron-intron	ENST00000588839	ENST00000215531		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
intron-5UTR	ENST00000588839	ENST00000587847		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
intron-5UTR	ENST00000588839	ENST00000586804		TCGA	RV	LIHC	TCGA-5C-A9VG-01A	NFIC	chr19	3382241	+	C19orf77	chr19	3478927	-
intron-3CDS	ENST00000426128	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-3CDS	ENST00000426128	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-intron	ENST00000426128	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-3CDS	ENST00000388728	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-3CDS	ENST00000388728	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-intron	ENST00000388728	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
Frame-shit	ENST00000257694	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
Frame-shit	ENST00000257694	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
5CDS-intron	ENST00000257694	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
In-frame	ENST00000422087	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
In-frame	ENST00000422087	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
5CDS-intron	ENST00000422087	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
In-frame	ENST00000453144	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
In-frame	ENST00000453144	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
5CDS-intron	ENST00000453144	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
Frame-shit	ENST00000436062	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
Frame-shit	ENST00000436062	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
5CDS-intron	ENST00000436062	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-3CDS	ENST00000483879	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-3CDS	ENST00000483879	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
intron-intron	ENST00000483879	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	PNPLA8	chr7	108128203	-	CFTR	chr7	117282492	+
5CDS-intron	ENST00000379565	ENST00000382151		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379565	ENST00000266095		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379565	ENST00000397500		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379565	ENST00000336566		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379565	ENST00000439502		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379565	ENST00000478893		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000544447	ENST00000382151		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000544447	ENST00000266095		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000544447	ENST00000397500		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000544447	ENST00000336566		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000544447	ENST00000439502		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000544447	ENST00000478893		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379548	ENST00000382151		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379548	ENST00000266095		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379548	ENST00000397500		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379548	ENST00000336566		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379548	ENST00000439502		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000379548	ENST00000478893		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000540702	ENST00000382151		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000540702	ENST00000266095		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000540702	ENST00000397500		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000540702	ENST00000336566		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000540702	ENST00000439502		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
5CDS-intron	ENST00000540702	ENST00000478893		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-intron	ENST00000479809	ENST00000382151		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-intron	ENST00000479809	ENST00000266095		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-intron	ENST00000479809	ENST00000397500		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-intron	ENST00000479809	ENST00000336566		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-intron	ENST00000479809	ENST00000439502		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-intron	ENST00000479809	ENST00000478893		TCGA	RV	LIHC	TCGA-DD-AACA-02A	RPS6KA3	chrX	20193282	-	PISD	chr22	32028277	-
intron-3CDS	ENST00000539591	ENST00000378407		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45985497	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000539591	ENST00000378406		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45985497	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000539591	ENST00000426546		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45985497	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000539591	ENST00000327351		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45985497	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000539591	ENST00000421582		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45985497	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000539591	ENST00000378409		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45985497	-	CCDC107	chr9	35658573	+
3UTR-intron	ENST00000402696	ENST00000367545		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000402696	ENST00000367526		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000402696	ENST00000480333		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000264998	ENST00000367545		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000264998	ENST00000367526		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000264998	ENST00000480333		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
intron-intron	ENST00000475382	ENST00000367545		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
intron-intron	ENST00000475382	ENST00000367526		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
intron-intron	ENST00000475382	ENST00000480333		TCGA	RV	LIHC	TCGA-DD-A4NL-01A	TF	chr3	133497635	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000375299	ENST00000375312		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000360383		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000356221		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000375310		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000375308		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000252457		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000252458		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5CDS-intron	ENST00000375299	ENST00000461716		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375312		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000360383		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000356221		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375310		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375308		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000252457		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000252458		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5CDS-intron	ENST00000351487	ENST00000461716		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375312		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000360383		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000356221		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375310		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375308		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000252457		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000252458		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-intron	ENST00000475218	ENST00000461716		TCGA	RV	LIHC	TCGA-DD-AAVW-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000478253	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000478253	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
5CDS-intron	ENST00000478253	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
Frame-shit	ENST00000295962	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
5CDS-intron	ENST00000295962	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-3CDS	ENST00000480457	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
intron-intron	ENST00000480457	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A115-01A	ABHD6	chr3	58242432	+	FLNB	chr3	58104599	+
5CDS-intron	ENST00000265132	ENST00000264818		TCGA	RV	LIHC	TCGA-DD-A115-01A	AMBP	chr9	116822407	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265132	ENST00000524462		TCGA	RV	LIHC	TCGA-DD-A115-01A	AMBP	chr9	116822407	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265132	ENST00000525621		TCGA	RV	LIHC	TCGA-DD-A115-01A	AMBP	chr9	116822407	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265132	ENST00000529370		TCGA	RV	LIHC	TCGA-DD-A115-01A	AMBP	chr9	116822407	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000265132	ENST00000529422		TCGA	RV	LIHC	TCGA-DD-A115-01A	AMBP	chr9	116822407	-	TYK2	chr19	10491352	-
In-frame	ENST00000381061	ENST00000337137		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000381061	ENST00000380995		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000381061	ENST00000407381		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000381061	ENST00000355704		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000381061	ENST00000472791		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000381061	ENST00000406733		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
In-frame	ENST00000252934	ENST00000337137		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000252934	ENST00000380995		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000252934	ENST00000407381		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000252934	ENST00000355704		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000252934	ENST00000472791		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
5CDS-intron	ENST00000252934	ENST00000406733		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-3CDS	ENST00000498009	ENST00000337137		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000498009	ENST00000380995		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000498009	ENST00000407381		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000498009	ENST00000355704		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000498009	ENST00000472791		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000498009	ENST00000406733		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-3CDS	ENST00000402380	ENST00000337137		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000402380	ENST00000380995		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000402380	ENST00000407381		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000402380	ENST00000355704		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000402380	ENST00000472791		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000402380	ENST00000406733		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	ATXN10	chr22	46136418	+	TBC1D22A	chr22	47507404	+
intron-intron	ENST00000245907	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AACA-02A	C3	chr19	6677846	-	DDX21	chr10	70723858	+
intron-intron	ENST00000599668	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AACA-02A	C3	chr19	6677846	-	DDX21	chr10	70723858	+
Frame-shit	ENST00000261891	ENST00000300030		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000261891	ENST00000558779		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000261891	ENST00000380290		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000261891	ENST00000557835		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000261891	ENST00000559950		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
Frame-shit	ENST00000457488	ENST00000300030		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000457488	ENST00000558779		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000457488	ENST00000380290		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000457488	ENST00000557835		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000457488	ENST00000559950		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
Frame-shit	ENST00000558069	ENST00000300030		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000558069	ENST00000558779		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000558069	ENST00000380290		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000558069	ENST00000557835		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5CDS-intron	ENST00000558069	ENST00000559950		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5UTR-3CDS	ENST00000558482	ENST00000300030		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5UTR-intron	ENST00000558482	ENST00000558779		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5UTR-intron	ENST00000558482	ENST00000380290		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5UTR-intron	ENST00000558482	ENST00000557835		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
5UTR-intron	ENST00000558482	ENST00000559950		TCGA	RV	LIHC	TCGA-FV-A495-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64381050	-
Frame-shit	ENST00000368407	ENST00000449910		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000368412		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000359280		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000356955		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000355956		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000360674		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000368410		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000271836		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000368413		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000531455		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-intron	ENST00000368407	ENST00000447332		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368407	ENST00000472434		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
Frame-shit	ENST00000368406	ENST00000449910		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000368412		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000359280		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000356955		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000355956		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000360674		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000368410		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000271836		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000368413		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000531455		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-intron	ENST00000368406	ENST00000447332		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
5CDS-3UTR	ENST00000368406	ENST00000472434		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3CDS	ENST00000469878	ENST00000449910		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000368412		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000359280		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000356955		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000355956		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000360674		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000368410		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000271836		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000368413		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000531455		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-intron	ENST00000469878	ENST00000447332		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
3UTR-3UTR	ENST00000469878	ENST00000472434		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EFNA1	chr1	155104110	+	ADAM15	chr1	155034936	+
In-frame	ENST00000366647	ENST00000444294		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366647	ENST00000366652		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366647	ENST00000449018		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366647	ENST00000366653		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366646	ENST00000444294		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366646	ENST00000366652		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366646	ENST00000449018		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
In-frame	ENST00000366646	ENST00000366653		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
intron-3CDS	ENST00000469332	ENST00000444294		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
intron-3CDS	ENST00000469332	ENST00000366652		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
intron-3CDS	ENST00000469332	ENST00000449018		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
intron-3CDS	ENST00000469332	ENST00000366653		TCGA	RV	LIHC	TCGA-G3-AAV7-01A	GNPAT	chr1	231377202	+	TRIM67	chr1	231335894	+
Frame-shit	ENST00000230173	ENST00000367630		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000230173	ENST00000367621		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000230173	ENST00000452973		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000230173	ENST00000491881		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
Frame-shit	ENST00000367608	ENST00000367630		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000367608	ENST00000367621		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000367608	ENST00000452973		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000367608	ENST00000491881		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
Frame-shit	ENST00000296932	ENST00000367630		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000296932	ENST00000367621		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000296932	ENST00000452973		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000296932	ENST00000491881		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
Frame-shit	ENST00000367609	ENST00000367630		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000367609	ENST00000367621		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000367609	ENST00000452973		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
5CDS-intron	ENST00000367609	ENST00000491881		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
intron-3CDS	ENST00000545477	ENST00000367630		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
intron-intron	ENST00000545477	ENST00000367621		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
intron-intron	ENST00000545477	ENST00000452973		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
intron-intron	ENST00000545477	ENST00000491881		TCGA	RV	LIHC	TCGA-CC-5263-01A	GPR126	chr6	142623468	+	VTA1	chr6	142487365	+
Frame-shit	ENST00000394289	ENST00000371939		TCGA	RV	LIHC	TCGA-BC-A112-01A	KIF20B	chr10	91505716	+	LIPJ	chr10	90362333	+
Frame-shit	ENST00000260753	ENST00000371939		TCGA	RV	LIHC	TCGA-BC-A112-01A	KIF20B	chr10	91505716	+	LIPJ	chr10	90362333	+
Frame-shit	ENST00000416354	ENST00000371939		TCGA	RV	LIHC	TCGA-BC-A112-01A	KIF20B	chr10	91505716	+	LIPJ	chr10	90362333	+
Frame-shit	ENST00000371728	ENST00000371939		TCGA	RV	LIHC	TCGA-BC-A112-01A	KIF20B	chr10	91505716	+	LIPJ	chr10	90362333	+
3UTR-3CDS	ENST00000478929	ENST00000371939		TCGA	RV	LIHC	TCGA-BC-A112-01A	KIF20B	chr10	91505716	+	LIPJ	chr10	90362333	+
Frame-shit	ENST00000446906	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000446906	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000446906	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000446906	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377072	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377072	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377072	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000377072	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000307729	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000307729	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000307729	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000307729	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377059	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377059	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377059	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000377059	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
3UTR-3CDS	ENST00000495130	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
3UTR-3CDS	ENST00000495130	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
3UTR-3CDS	ENST00000495130	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
3UTR-3UTR	ENST00000495130	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377100	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377100	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377100	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000377100	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377091	ENST00000371996		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377091	ENST00000371994		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
Frame-shit	ENST00000377091	ENST00000536010		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5CDS-3UTR	ENST00000377091	ENST00000472891		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	MLLT10	chr10	21823733	+	MINPP1	chr10	89311839	+
5UTR-3CDS	ENST00000401950	ENST00000216144		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	MTMR3	chr22	30353077	+	CABP7	chr22	30123651	+
5UTR-3CDS	ENST00000333027	ENST00000216144		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	MTMR3	chr22	30353077	+	CABP7	chr22	30123651	+
5UTR-3CDS	ENST00000323630	ENST00000216144		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	MTMR3	chr22	30353077	+	CABP7	chr22	30123651	+
5UTR-3CDS	ENST00000351488	ENST00000216144		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	MTMR3	chr22	30353077	+	CABP7	chr22	30123651	+
intron-3CDS	ENST00000406629	ENST00000216144		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	MTMR3	chr22	30353077	+	CABP7	chr22	30123651	+
3UTR-3CDS	ENST00000415511	ENST00000216144		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	MTMR3	chr22	30353077	+	CABP7	chr22	30123651	+
In-frame	ENST00000418089	ENST00000367661		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000418089	ENST00000367662		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
5CDS-intron	ENST00000418089	ENST00000486075		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000413720	ENST00000367661		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000413720	ENST00000367662		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
5CDS-intron	ENST00000413720	ENST00000486075		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000367536	ENST00000367661		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000367536	ENST00000367662		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
5CDS-intron	ENST00000367536	ENST00000486075		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000367535	ENST00000367661		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000367535	ENST00000367662		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
5CDS-intron	ENST00000367535	ENST00000486075		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
intron-3CDS	ENST00000469280	ENST00000367661		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
intron-3CDS	ENST00000469280	ENST00000367662		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
intron-intron	ENST00000469280	ENST00000486075		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	NCF2	chr1	183538277	-	PAPPA2	chr1	176640106	+
In-frame	ENST00000328965	ENST00000227322		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	ZNF259	chr11	116658359	-
5UTR-3CDS	ENST00000531220	ENST00000227322		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	ZNF259	chr11	116658359	-
intron-3CDS	ENST00000534735	ENST00000227322		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	ZNF259	chr11	116658359	-
Frame-shit	ENST00000376279	ENST00000376335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
5CDS-3UTR	ENST00000376279	ENST00000477213		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
intron-3CDS	ENST00000376286	ENST00000376335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
intron-3UTR	ENST00000376286	ENST00000477213		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
Frame-shit	ENST00000376285	ENST00000376335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
5CDS-3UTR	ENST00000376285	ENST00000477213		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
intron-3CDS	ENST00000485946	ENST00000376335		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
intron-3UTR	ENST00000485946	ENST00000477213		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	PCCA	chr13	100755214	+	ZIC2	chr13	100637200	+
intron-3CDS	ENST00000315249	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000315249	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000315249	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-intron	ENST00000315249	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000580569	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000580569	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000580569	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-intron	ENST00000580569	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000268850	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000268850	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000268850	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-intron	ENST00000268850	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000378516	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000378516	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000378516	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-intron	ENST00000378516	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000584655	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000584655	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000584655	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-intron	ENST00000584655	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000394597	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000394597	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-3CDS	ENST00000394597	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5UTR-intron	ENST00000394597	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000447669	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000447669	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000447669	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-intron	ENST00000447669	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000415395	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000415395	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000415395	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-intron	ENST00000415395	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000413582	ENST00000437682		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000413582	ENST00000519315		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-3CDS	ENST00000413582	ENST00000379907		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
intron-intron	ENST00000413582	ENST00000524303		TCGA	RV	LIHC	TCGA-BC-4072-01B	RFFL	chr17	33390595	-	ADAM32	chr8	39004649	+
5CDS-5UTR	ENST00000379122	ENST00000268154		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000379122	ENST00000560908		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
5CDS-5UTR	ENST00000332496	ENST00000268154		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000332496	ENST00000560908		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000560263	ENST00000268154		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000560263	ENST00000560908		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
5CDS-5UTR	ENST00000411539	ENST00000268154		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000411539	ENST00000560908		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SEMA4B	chr15	90764997	+	ZNF710	chr15	90610342	+
Frame-shit	ENST00000361368	ENST00000327442		TCGA	RV	LIHC	TCGA-ZS-A9CG-01A	SMURF1	chr7	98741349	-	KPNA7	chr7	98790724	-
Frame-shit	ENST00000361125	ENST00000327442		TCGA	RV	LIHC	TCGA-ZS-A9CG-01A	SMURF1	chr7	98741349	-	KPNA7	chr7	98790724	-
intron-3CDS	ENST00000480055	ENST00000327442		TCGA	RV	LIHC	TCGA-ZS-A9CG-01A	SMURF1	chr7	98741349	-	KPNA7	chr7	98790724	-
In-frame	ENST00000441779	ENST00000355947		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
In-frame	ENST00000441779	ENST00000349062		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
5CDS-intron	ENST00000441779	ENST00000354241		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
In-frame	ENST00000221283	ENST00000355947		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
In-frame	ENST00000221283	ENST00000349062		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
5CDS-intron	ENST00000221283	ENST00000354241		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
In-frame	ENST00000414284	ENST00000355947		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
In-frame	ENST00000414284	ENST00000349062		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
5CDS-intron	ENST00000414284	ENST00000354241		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
intron-3CDS	ENST00000602355	ENST00000355947		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
intron-3CDS	ENST00000602355	ENST00000349062		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
intron-intron	ENST00000602355	ENST00000354241		TCGA	RV	LIHC	TCGA-DD-A11C-01A	STXBP2	chr19	7704693	+	TRIM4	chr7	99490369	-
5CDS-intron	ENST00000534894	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000534894	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000534894	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355717	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355717	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355717	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369397	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369397	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369397	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000352065	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000352065	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000352065	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369395	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369395	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369395	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5UTR-intron	ENST00000542695	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5UTR-intron	ENST00000542695	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
5UTR-intron	ENST00000542695	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369389	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369389	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369389	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A73F-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114575049	+
Frame-shit	ENST00000511725	ENST00000355078		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000511725	ENST00000302763		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000511725	ENST00000518825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-3UTR	ENST00000511725	ENST00000520400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-5UTR	ENST00000511725	ENST00000540387		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000253815	ENST00000355078		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000253815	ENST00000302763		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000253815	ENST00000518825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-3UTR	ENST00000253815	ENST00000520400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-5UTR	ENST00000253815	ENST00000540387		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000398733	ENST00000355078		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000398733	ENST00000302763		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000398733	ENST00000518825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-3UTR	ENST00000398733	ENST00000520400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-5UTR	ENST00000398733	ENST00000540387		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000505548	ENST00000355078		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000505548	ENST00000302763		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
Frame-shit	ENST00000505548	ENST00000518825		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-3UTR	ENST00000505548	ENST00000520400		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
5CDS-5UTR	ENST00000505548	ENST00000540387		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UBE2D2	chr5	138980020	+	CTNNA1	chr5	138221901	+
In-frame	ENST00000367545	ENST00000357847		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367545	ENST00000344492		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367545	ENST00000275235		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367545	ENST00000367598		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367545	ENST00000494282		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367545	ENST00000367596		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-3CDS	ENST00000367526	ENST00000357847		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000367526	ENST00000344492		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000367526	ENST00000275235		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000367526	ENST00000367598		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000367526	ENST00000494282		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000367526	ENST00000367596		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-3CDS	ENST00000480333	ENST00000357847		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000480333	ENST00000344492		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000480333	ENST00000275235		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000480333	ENST00000367598		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000480333	ENST00000494282		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-intron	ENST00000480333	ENST00000367596		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	UTRN	chr6	144860579	+	AIG1	chr6	143457972	+
intron-5UTR	ENST00000417172	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000361388	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000422748	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000361675	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000361901	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000393118	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000495522	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
5CDS-5UTR	ENST00000424922	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000543443	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
intron-5UTR	ENST00000466704	ENST00000271636		TCGA	RV	LIHC	TCGA-DD-A115-01A	CALD1	chr7	134576424	+	CGN	chr1	151490982	+
In-frame	ENST00000078445	ENST00000291906		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
5CDS-intron	ENST00000078445	ENST00000485301		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
intron-3CDS	ENST00000252587	ENST00000291906		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
intron-intron	ENST00000252587	ENST00000485301		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
In-frame	ENST00000595923	ENST00000291906		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
5CDS-intron	ENST00000595923	ENST00000485301		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
In-frame	ENST00000602257	ENST00000291906		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
5CDS-intron	ENST00000602257	ENST00000485301		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
Frame-shit	ENST00000602147	ENST00000291906		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
5CDS-intron	ENST00000602147	ENST00000485301		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	CREB3L3	chr19	4171172	+	PKN3	chr9	131467582	+
intron-3CDS	ENST00000465409	ENST00000260746		TCGA	RV	LIHC	TCGA-5R-AA1C-01A	CUEDC2	chr10	104192283	-	ARL3	chr10	104465246	-
5UTR-3CDS	ENST00000369937	ENST00000260746		TCGA	RV	LIHC	TCGA-5R-AA1C-01A	CUEDC2	chr10	104192283	-	ARL3	chr10	104465246	-
In-frame	ENST00000412331	ENST00000267584		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
5CDS-intron	ENST00000412331	ENST00000555570		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
5CDS-intron	ENST00000412331	ENST00000554313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
In-frame	ENST00000381683	ENST00000267584		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
5CDS-intron	ENST00000381683	ENST00000555570		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
5CDS-intron	ENST00000381683	ENST00000554313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
In-frame	ENST00000406934	ENST00000267584		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
5CDS-intron	ENST00000406934	ENST00000555570		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
5CDS-intron	ENST00000406934	ENST00000554313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
intron-3CDS	ENST00000476955	ENST00000267584		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
intron-intron	ENST00000476955	ENST00000555570		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
intron-intron	ENST00000476955	ENST00000554313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	EIF3L	chr22	38270531	+	AK7	chr14	96922684	+
In-frame	ENST00000584601	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	RV	LIHC	TCGA-KR-A7K2-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
Frame-shit	ENST00000534526	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000534526	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000534526	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
Frame-shit	ENST00000531134	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000531134	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000531134	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
Frame-shit	ENST00000427716	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000427716	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000427716	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
Frame-shit	ENST00000266482	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000266482	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000266482	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
Frame-shit	ENST00000546442	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000546442	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000546442	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
Frame-shit	ENST00000525053	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000525053	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000525053	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
Frame-shit	ENST00000381025	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000381025	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
5CDS-3UTR	ENST00000381025	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
intron-3CDS	ENST00000472289	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
intron-3UTR	ENST00000472289	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
intron-3UTR	ENST00000472289	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
intron-3CDS	ENST00000473513	ENST00000011653		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
intron-3UTR	ENST00000473513	ENST00000541982		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
intron-3UTR	ENST00000473513	ENST00000538827		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FGD4	chr12	32764217	+	CD4	chr12	6925222	+
In-frame	ENST00000267615	ENST00000379725		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000267615	ENST00000379723		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000267615	ENST00000379721		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
In-frame	ENST00000354313	ENST00000379725		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000354313	ENST00000379723		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000354313	ENST00000379721		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
Frame-shit	ENST00000556603	ENST00000379725		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000556603	ENST00000379723		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-intron	ENST00000556603	ENST00000379721		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5UTR-3CDS	ENST00000555495	ENST00000379725		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5UTR-intron	ENST00000555495	ENST00000379723		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5UTR-intron	ENST00000555495	ENST00000379721		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
intron-3CDS	ENST00000556954	ENST00000379725		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
intron-intron	ENST00000556954	ENST00000379723		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
intron-intron	ENST00000556954	ENST00000379721		TCGA	RV	LIHC	TCGA-DD-A73D-01A	ITPK1	chr14	93581414	-	SPINK4	chr9	33218363	+
5CDS-5UTR	ENST00000404260	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000404260	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000404260	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000404260	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000404260	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000403625	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000403625	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000403625	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000403625	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000403625	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000406374	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406374	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406374	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406374	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406374	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-5UTR	ENST00000406039	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406039	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406039	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406039	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000406039	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000478569	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000478569	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000478569	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000478569	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000478569	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000490016	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000490016	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000490016	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000490016	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000490016	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000403666	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000403666	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000403666	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000403666	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000403666	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000405643	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000405643	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000405643	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000405643	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000405643	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000261569	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000261569	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000261569	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000261569	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000261569	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000407621	ENST00000494753		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000407621	ENST00000411567		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000407621	ENST00000276914		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000407621	ENST00000380465		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
intron-intron	ENST00000407621	ENST00000380464		TCGA	RV	LIHC	TCGA-CC-5263-01A	MAST4	chr5	65892846	+	PLIN2	chr9	19131269	-
Frame-shit	ENST00000328024	ENST00000301455		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000328024	ENST00000541807		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000328024	ENST00000393962		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000601897	ENST00000301455		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000601897	ENST00000541807		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000601897	ENST00000393962		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000594216	ENST00000301455		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000594216	ENST00000541807		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000594216	ENST00000393962		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	RAB11B	chr19	8467449	+	ANGPTL4	chr19	8438589	+
5UTR-5UTR	ENST00000265062	ENST00000358625		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RAB7A	chr3	128445202	+	WDR5	chr9	137004942	+
5UTR-5UTR	ENST00000265062	ENST00000425041		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RAB7A	chr3	128445202	+	WDR5	chr9	137004942	+
5UTR-5UTR	ENST00000482525	ENST00000358625		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RAB7A	chr3	128445202	+	WDR5	chr9	137004942	+
5UTR-5UTR	ENST00000482525	ENST00000425041		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RAB7A	chr3	128445202	+	WDR5	chr9	137004942	+
intron-5UTR	ENST00000485280	ENST00000358625		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RAB7A	chr3	128445202	+	WDR5	chr9	137004942	+
intron-5UTR	ENST00000485280	ENST00000425041		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RAB7A	chr3	128445202	+	WDR5	chr9	137004942	+
5UTR-3CDS	ENST00000359511	ENST00000374530		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	PALM2-AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000359511	ENST00000302798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	PALM2-AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000374530		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	PALM2-AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000302798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	PALM2-AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000374530		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	PALM2-AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000302798		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	PALM2-AKAP2	chr9	112918599	+
Frame-shit	ENST00000354618	ENST00000316156		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000354618	ENST00000373150		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000354618	ENST00000373151		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000354618	ENST00000474796		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000354618	ENST00000373148		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000469141	ENST00000316156		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000469141	ENST00000373150		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000469141	ENST00000373151		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000469141	ENST00000474796		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
5CDS-intron	ENST00000469141	ENST00000373148		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000466743	ENST00000316156		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000466743	ENST00000373150		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
intron-3CDS	ENST00000466743	ENST00000373151		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
intron-intron	ENST00000466743	ENST00000474796		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
intron-intron	ENST00000466743	ENST00000373148		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	THRAP3	chr1	36748301	+	MAP7D1	chr1	36636572	+
Frame-shit	ENST00000298767	ENST00000372027		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
5CDS-intron	ENST00000298767	ENST00000488950		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
intron-3CDS	ENST00000372075	ENST00000372027		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
intron-intron	ENST00000372075	ENST00000488950		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
intron-3CDS	ENST00000263070	ENST00000372027		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
intron-intron	ENST00000263070	ENST00000488950		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
intron-3CDS	ENST00000484070	ENST00000372027		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
intron-intron	ENST00000484070	ENST00000488950		TCGA	RV	LIHC	TCGA-DD-A39X-01A	WAPAL	chr10	88277328	-	MMRN2	chr10	88696882	-
5CDS-intron	ENST00000264914	ENST00000520388		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000264914	ENST00000255189		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000264914	ENST00000380311		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000264914	ENST00000540686		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000396151	ENST00000520388		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000396151	ENST00000255189		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000396151	ENST00000380311		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000396151	ENST00000540686		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000565165	ENST00000520388		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000565165	ENST00000255189		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000565165	ENST00000380311		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
5CDS-intron	ENST00000565165	ENST00000540686		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
intron-intron	ENST00000521800	ENST00000520388		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
intron-intron	ENST00000521800	ENST00000255189		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
intron-intron	ENST00000521800	ENST00000380311		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
intron-intron	ENST00000521800	ENST00000540686		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	ARSB	chr5	78251118	-	DMGDH	chr5	78322404	-
Frame-shit	ENST00000541428	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000541428	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
Frame-shit	ENST00000379454	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000379454	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000523897	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000523897	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000522919	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000522919	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000356457	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000356457	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000518068	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000518068	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000517903	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000517903	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000445642	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000445642	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000517847	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000517847	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000522835	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000522835	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000517856	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000517856	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000389204	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000389204	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000522603	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000522603	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000379449	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000379449	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000517661	ENST00000338825		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000517661	ENST00000520657		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	ASPH	chr8	62430087	-	EIF4EBP1	chr8	37914599	+
5CDS-intron	ENST00000546373	ENST00000535593		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000546373	ENST00000542038		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000546373	ENST00000540141		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000546373	ENST00000229314		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000535593		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000542038		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000540141		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000551568	ENST00000229314		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000535593		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000542038		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000540141		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
5CDS-intron	ENST00000338356	ENST00000229314		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000535593		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000542038		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000540141		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
intron-intron	ENST00000549691	ENST00000229314		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPM	chr12	69326458	-	GOLT1B	chr12	21659819	+
In-frame	ENST00000301764	ENST00000340437		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
In-frame	ENST00000301764	ENST00000394888		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
In-frame	ENST00000301764	ENST00000439958		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000301764	ENST00000494016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000301764	ENST00000448745		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000301764	ENST00000541963		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
In-frame	ENST00000450997	ENST00000340437		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
In-frame	ENST00000450997	ENST00000394888		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
In-frame	ENST00000450997	ENST00000439958		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000450997	ENST00000494016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000450997	ENST00000448745		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000450997	ENST00000541963		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000451943	ENST00000340437		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000451943	ENST00000394888		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000451943	ENST00000439958		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000451943	ENST00000494016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000451943	ENST00000448745		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000451943	ENST00000541963		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000538470	ENST00000340437		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000538470	ENST00000394888		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000538470	ENST00000439958		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000538470	ENST00000494016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000538470	ENST00000448745		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000538470	ENST00000541963		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000545930	ENST00000340437		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000545930	ENST00000394888		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-3CDS	ENST00000545930	ENST00000439958		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000545930	ENST00000494016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000545930	ENST00000448745		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
intron-intron	ENST00000545930	ENST00000541963		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	DDB1	chr11	61099015	-	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000570083	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000570083	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000355906	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000355906	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000398131	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000398131	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
intron-intron	ENST00000569639	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
intron-intron	ENST00000569639	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
intron-intron	ENST00000357763	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
intron-intron	ENST00000357763	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000562526	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000562526	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
intron-intron	ENST00000565574	ENST00000322349		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
intron-intron	ENST00000565574	ENST00000547833		TCGA	RV	LIHC	TCGA-BC-A10W-01A	HP	chr16	72094953	+	EEA1	chr12	93229203	-
In-frame	ENST00000320316	ENST00000447733		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000320316	ENST00000449058		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000320316	ENST00000425375		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000320316	ENST00000411850		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000320316	ENST00000436462		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5CDS-3UTR	ENST00000320316	ENST00000382034		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000571362	ENST00000447733		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000571362	ENST00000449058		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000571362	ENST00000425375		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000571362	ENST00000411850		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
In-frame	ENST00000571362	ENST00000436462		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5CDS-3UTR	ENST00000571362	ENST00000382034		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3CDS	ENST00000576955	ENST00000447733		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3CDS	ENST00000576955	ENST00000449058		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3CDS	ENST00000576955	ENST00000425375		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3CDS	ENST00000576955	ENST00000411850		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3CDS	ENST00000576955	ENST00000436462		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3UTR	ENST00000576955	ENST00000382034		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000454255	ENST00000447733		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000454255	ENST00000449058		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000454255	ENST00000425375		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000454255	ENST00000411850		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000454255	ENST00000436462		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3UTR	ENST00000454255	ENST00000382034		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000570753	ENST00000447733		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000570753	ENST00000449058		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000570753	ENST00000425375		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000570753	ENST00000411850		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3CDS	ENST00000570753	ENST00000436462		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
intron-3UTR	ENST00000570753	ENST00000382034		TCGA	RV	LIHC	TCGA-ZS-A9CD-01A	PHF23	chr17	7142565	-	TOM1	chr22	35741718	+
5UTR-3CDS	ENST00000265109	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000265109	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000265109	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000265109	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000265109	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3UTR	ENST00000265109	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000265109	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000265109	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000265109	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000265109	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000512629	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000512629	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000512629	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000512629	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3CDS	ENST00000512629	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-3UTR	ENST00000512629	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000512629	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000512629	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000512629	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
5UTR-intron	ENST00000512629	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000428746	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000428746	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000428746	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000428746	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000428746	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3UTR	ENST00000428746	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000428746	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000428746	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000428746	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000428746	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000503673	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000503673	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000503673	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000503673	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000503673	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3UTR	ENST00000503673	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000503673	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000503673	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000503673	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000503673	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000515799	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000515799	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000515799	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000515799	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000515799	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3UTR	ENST00000515799	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000515799	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000515799	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000515799	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000515799	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000506376	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000506376	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000506376	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000506376	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000506376	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3UTR	ENST00000506376	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000506376	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000506376	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000506376	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000506376	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000507276	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000507276	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000507276	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000507276	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000507276	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3UTR	ENST00000507276	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000507276	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000507276	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000507276	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000507276	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000397449	ENST00000371514		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000397449	ENST00000528311		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000397449	ENST00000371509		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000397449	ENST00000407246		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000397449	ENST00000371513		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3UTR	ENST00000397449	ENST00000473584		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000397449	ENST00000430330		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000397449	ENST00000408941		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000397449	ENST00000435345		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-intron	ENST00000397449	ENST00000488965		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	RAI14	chr5	34656580	+	SCP2	chr1	53440441	+
intron-3CDS	ENST00000440909	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000440909	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000440909	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000448921	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000448921	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000448921	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000437397	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000437397	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000437397	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000355814	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000355814	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000355814	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000393087	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000393087	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000393087	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
Frame-shit	ENST00000393088	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
Frame-shit	ENST00000393088	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
5CDS-3UTR	ENST00000393088	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000404814	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000404814	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000404814	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000449399	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000449399	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000449399	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000402629	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000402629	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000402629	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000555289	ENST00000225719		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3CDS	ENST00000555289	ENST00000543464		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
intron-3UTR	ENST00000555289	ENST00000584051		TCGA	RV	LIHC	TCGA-ED-A459-01A	SERPINA1	chr14	94844713	-	CPD	chr17	28783274	+
Frame-shit	ENST00000375759	ENST00000375771		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
Frame-shit	ENST00000375759	ENST00000375766		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
Frame-shit	ENST00000375759	ENST00000400773		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
In-frame	ENST00000375759	ENST00000441801		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
Frame-shit	ENST00000375759	ENST00000332305		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
5CDS-intron	ENST00000375759	ENST00000509138		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
3UTR-3CDS	ENST00000471538	ENST00000375771		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
3UTR-3CDS	ENST00000471538	ENST00000375766		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
3UTR-3CDS	ENST00000471538	ENST00000400773		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
3UTR-3CDS	ENST00000471538	ENST00000441801		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
3UTR-3CDS	ENST00000471538	ENST00000332305		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
3UTR-intron	ENST00000471538	ENST00000509138		TCGA	RV	LIHC	TCGA-5C-AAPD-01A	SPEN	chr1	16203173	+	FBLIM1	chr1	16101113	+
Frame-shit	ENST00000375299	ENST00000375312		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000360383		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000356221		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000375310		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000375308		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000252457		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000375299	ENST00000252458		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5CDS-intron	ENST00000375299	ENST00000461716		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375312		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000360383		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000356221		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375310		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000375308		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000252457		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
Frame-shit	ENST00000351487	ENST00000252458		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5CDS-intron	ENST00000351487	ENST00000461716		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375312		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000360383		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000356221		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375310		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000375308		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000252457		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-3CDS	ENST00000475218	ENST00000252458		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
3UTR-intron	ENST00000475218	ENST00000461716		TCGA	RV	LIHC	TCGA-DD-AADJ-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115027362	+
5UTR-3CDS	ENST00000291572	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
5UTR-intron	ENST00000291572	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
5UTR-3CDS	ENST00000398061	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
5UTR-intron	ENST00000398061	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
5UTR-3CDS	ENST00000327505	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
5UTR-intron	ENST00000327505	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000398063	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-intron	ENST00000398063	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000398058	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-intron	ENST00000398058	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000546158	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-intron	ENST00000546158	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000479117	ENST00000497547		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
intron-intron	ENST00000479117	ENST00000471909		TCGA	RV	LIHC	TCGA-BC-A216-01A	AGPAT3	chr21	45323900	+	RRP1	chr21	45211231	+
5CDS-5UTR	ENST00000324856	ENST00000400921		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-5UTR	ENST00000324856	ENST00000400920		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-intron	ENST00000324856	ENST00000479263		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-5UTR	ENST00000457599	ENST00000400921		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-5UTR	ENST00000457599	ENST00000400920		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-intron	ENST00000457599	ENST00000479263		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-5UTR	ENST00000374152	ENST00000400921		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-5UTR	ENST00000374152	ENST00000400920		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5CDS-intron	ENST00000374152	ENST00000479263		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000540690	ENST00000400921		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
intron-5UTR	ENST00000540690	ENST00000400920		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
intron-intron	ENST00000540690	ENST00000479263		TCGA	RV	LIHC	TCGA-DD-A11D-01A	ARID1A	chr1	27088810	+	PRKCZ	chr1	2066701	+
5UTR-3CDS	ENST00000064778	ENST00000328257		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000064778	ENST00000398427		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3UTR	ENST00000064778	ENST00000542710		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-intron	ENST00000064778	ENST00000543525		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000450446	ENST00000328257		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000450446	ENST00000398427		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3UTR	ENST00000450446	ENST00000542710		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-intron	ENST00000450446	ENST00000543525		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000356467	ENST00000328257		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3CDS	ENST00000356467	ENST00000398427		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-3UTR	ENST00000356467	ENST00000542710		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
5UTR-intron	ENST00000356467	ENST00000543525		TCGA	RV	LIHC	TCGA-DD-AADY-01A	FAM168A	chr11	73308968	-	PPME1	chr11	73914773	+
In-frame	ENST00000395965	ENST00000515393		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
In-frame	ENST00000395965	ENST00000429576		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
In-frame	ENST00000395965	ENST00000312216		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
In-frame	ENST00000395965	ENST00000505208		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000395965	ENST00000514040		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000395965	ENST00000505078		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000505869	ENST00000515393		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000505869	ENST00000429576		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000505869	ENST00000312216		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000505869	ENST00000505208		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000505869	ENST00000514040		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000505869	ENST00000505078		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000509739	ENST00000515393		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000509739	ENST00000429576		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000509739	ENST00000312216		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000509739	ENST00000505208		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000509739	ENST00000514040		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000509739	ENST00000505078		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000509163	ENST00000515393		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000509163	ENST00000429576		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000509163	ENST00000312216		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
Frame-shit	ENST00000509163	ENST00000505208		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000509163	ENST00000514040		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000509163	ENST00000505078		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5UTR-3CDS	ENST00000504768	ENST00000515393		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5UTR-3CDS	ENST00000504768	ENST00000429576		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5UTR-3CDS	ENST00000504768	ENST00000312216		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5UTR-3CDS	ENST00000504768	ENST00000505208		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5UTR-intron	ENST00000504768	ENST00000514040		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
5UTR-intron	ENST00000504768	ENST00000505078		TCGA	RV	LIHC	TCGA-ED-A82E-01A	FAM172A	chr5	93386436	-	MCTP1	chr5	94353188	-
In-frame	ENST00000351193	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000351193	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000351193	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000351193	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000351193	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000351193	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000472947	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000472947	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000472947	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000472947	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000472947	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000472947	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000460469	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000460469	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000460469	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000460469	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000460469	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000460469	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-3CDS	ENST00000478160	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-3CDS	ENST00000478160	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-3CDS	ENST00000478160	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-intron	ENST00000478160	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-intron	ENST00000478160	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-intron	ENST00000478160	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
intron-3CDS	ENST00000351960	ENST00000383699		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
intron-3CDS	ENST00000351960	ENST00000407528		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
intron-3CDS	ENST00000351960	ENST00000405615		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
intron-intron	ENST00000351960	ENST00000485126		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000358965	ENST00000383699		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000358965	ENST00000407528		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000358965	ENST00000405615		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-intron	ENST00000358965	ENST00000485126		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000393695	ENST00000383699		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000393695	ENST00000407528		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000393695	ENST00000405615		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-intron	ENST00000393695	ENST00000485126		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000543450	ENST00000383699		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000543450	ENST00000407528		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-3CDS	ENST00000543450	ENST00000405615		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
5UTR-intron	ENST00000543450	ENST00000485126		TCGA	RV	LIHC	TCGA-2Y-A9H2-01A	NUMA1	chr11	71791504	-	CADM2	chr3	86114755	+
Frame-shit	ENST00000401707	ENST00000276692		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
Frame-shit	ENST00000401707	ENST00000519548		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000401707	ENST00000517678		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000401707	ENST00000521546		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000401707	ENST00000605953		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
Frame-shit	ENST00000349693	ENST00000276692		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
Frame-shit	ENST00000349693	ENST00000519548		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000349693	ENST00000517678		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000349693	ENST00000521546		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
5CDS-intron	ENST00000349693	ENST00000605953		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	POP1	chr8	99146887	+	TATDN1	chr8	125500937	-
Frame-shit	ENST00000481739	ENST00000367433		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000481739	ENST00000498426		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000481739	ENST00000367431		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
5CDS-intron	ENST00000481739	ENST00000609185		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
5CDS-5UTR	ENST00000481739	ENST00000451324		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
5CDS-5UTR	ENST00000481739	ENST00000294725		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-3CDS	ENST00000356384	ENST00000367433		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000356384	ENST00000498426		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000356384	ENST00000367431		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000356384	ENST00000609185		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-5UTR	ENST00000356384	ENST00000451324		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-5UTR	ENST00000356384	ENST00000294725		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-3CDS	ENST00000540193	ENST00000367433		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000540193	ENST00000498426		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000540193	ENST00000367431		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-intron	ENST00000540193	ENST00000609185		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-5UTR	ENST00000540193	ENST00000451324		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
intron-5UTR	ENST00000540193	ENST00000294725		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	RXRA	chr9	137218505	+	KCNT2	chr1	196461471	-
In-frame	ENST00000296786	ENST00000261798		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
Frame-shit	ENST00000296786	ENST00000377843		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
In-frame	ENST00000296786	ENST00000515435		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
In-frame	ENST00000296786	ENST00000504676		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
Frame-shit	ENST00000296786	ENST00000515768		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
Frame-shit	ENST00000296786	ENST00000606719		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
5CDS-intron	ENST00000296786	ENST00000606299		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
5CDS-intron	ENST00000296786	ENST00000515748		TCGA	RV	LIHC	TCGA-ZP-A9D4-01A	UBLCP1	chr5	158696077	+	CSNK1A1	chr5	148876423	-
intron-3CDS	ENST00000339859	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000339859	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000408019	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000408019	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000428547	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000428547	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000394811	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000394811	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000497106	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000497106	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000422491	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000422491	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000319786	ENST00000373290		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000319786	ENST00000459981		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	USP54	chr10	75385695	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000339022	ENST00000394036		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3CDS	ENST00000339022	ENST00000394045		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3CDS	ENST00000339022	ENST00000348459		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3CDS	ENST00000339022	ENST00000371332		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3UTR	ENST00000339022	ENST00000239026		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3UTR	ENST00000339022	ENST00000394044		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-intron	ENST00000339022	ENST00000462057		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000285979	ENST00000394036		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
In-frame	ENST00000285979	ENST00000394045		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
In-frame	ENST00000285979	ENST00000348459		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
In-frame	ENST00000285979	ENST00000371332		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000285979	ENST00000239026		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000285979	ENST00000394044		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-intron	ENST00000285979	ENST00000462057		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-5UTR	ENST00000358290	ENST00000282470		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000358290	ENST00000418378		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000358290	ENST00000503414		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000507518	ENST00000282470		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000507518	ENST00000418378		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000507518	ENST00000503414		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000507286	ENST00000282470		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000507286	ENST00000418378		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000507286	ENST00000503414		TCGA	RV	LIHC	TCGA-DD-AAE9-01A	HSD17B11	chr4	88303407	-	SPARCL1	chr4	88420737	-
5UTR-3CDS	ENST00000379028	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000379028	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-intron	ENST00000379028	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000413765	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000413765	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-intron	ENST00000413765	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000351718	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000351718	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-intron	ENST00000351718	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000379024	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000379024	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-intron	ENST00000379024	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000379022	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-3CDS	ENST00000379022	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
5UTR-intron	ENST00000379022	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
intron-3CDS	ENST00000425651	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
intron-3CDS	ENST00000425651	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
intron-intron	ENST00000425651	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
intron-3CDS	ENST00000522550	ENST00000003084		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
intron-3CDS	ENST00000522550	ENST00000454343		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
intron-intron	ENST00000522550	ENST00000608965		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	NRCAM	chr7	108096687	-	CFTR	chr7	117305513	+
Frame-shit	ENST00000398844	ENST00000282605		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
5CDS-intron	ENST00000398844	ENST00000515554		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
5CDS-intron	ENST00000398844	ENST00000361895		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
5CDS-intron	ENST00000398844	ENST00000402835		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
5CDS-intron	ENST00000398844	ENST00000395003		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
intron-3CDS	ENST00000322887	ENST00000282605		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
intron-intron	ENST00000322887	ENST00000515554		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
intron-intron	ENST00000322887	ENST00000361895		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
intron-intron	ENST00000322887	ENST00000402835		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
intron-intron	ENST00000322887	ENST00000395003		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SEC24A	chr5	134053863	+	PHF15	chr5	133912458	+
intron-3CDS	ENST00000526660	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000526660	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000289575	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000289575	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000289575	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000289575	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000289575	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000289575	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000341411	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000341411	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000341411	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000341411	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000341411	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000341411	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000532236	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000532236	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000532236	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000532236	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000532236	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000532236	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000531756	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000531756	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000531756	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000531756	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000531756	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000531756	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000525650	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000525650	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000525650	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000525650	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000525650	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
In-frame	ENST00000525650	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000454962	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000454962	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000454962	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000454962	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000454962	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5UTR-3CDS	ENST00000454962	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000428359	ENST00000316673		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000428359	ENST00000609795		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000428359	ENST00000457232		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000428359	ENST00000443598		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000428359	ENST00000316099		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000428359	ENST00000415691		TCGA	RV	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74862442	+	HNF4A	chr20	43034698	+
5CDS-5UTR	ENST00000393446	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000393446	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-3UTR	ENST00000393446	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000393446	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393446	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000265437	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-3UTR	ENST00000265437	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000265437	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000265437	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000393451	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-3UTR	ENST00000393451	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000393451	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393451	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000393449	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-3UTR	ENST00000393449	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000393449	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000393449	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000323984	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-3UTR	ENST00000323984	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000323984	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-5UTR	ENST00000323984	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000432298	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000432298	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000432298	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000432298	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000422922	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000422922	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000422922	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000422922	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000487459	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000487459	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000487459	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000487459	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000393443	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000393443	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000393443	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393443	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000393447	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000393447	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000393447	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393447	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000393444	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000393444	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000393444	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000393444	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000393500		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000393494		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000403559		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000408937		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000350908		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000393498		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000393489		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000465133	ENST00000393491		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-3UTR	ENST00000465133	ENST00000459666		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000378237		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000360232		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-intron	ENST00000465133	ENST00000390668		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
intron-5UTR	ENST00000465133	ENST00000462331		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	ST7	chr7	116593745	+	FOXP2	chr7	114066557	+
5CDS-intron	ENST00000534894	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000534894	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000534894	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355717	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355717	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355717	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369397	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369397	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369397	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000352065	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000352065	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000352065	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369395	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369395	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369395	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000542695	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000542695	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000542695	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369389	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369389	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000369389	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-A1EB-01A	TCF7L2	chr10	114905856	+	VTI1A	chr10	114575049	+
5CDS-5UTR	ENST00000381792	ENST00000401419		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000381792	ENST00000397129		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000381792	ENST00000404802		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000381792	ENST00000341116		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000381792	ENST00000429360		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000381792	ENST00000404393		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000381792	ENST00000397225		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000401419		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000397129		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000404802		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000341116		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000429360		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000404393		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000346753	ENST00000397225		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000401419		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000397129		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000404802		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000341116		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000429360		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000404393		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406725	ENST00000397225		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000401419		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000397129		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000404802		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000341116		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000429360		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000404393		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000406856	ENST00000397225		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000401419		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000397129		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000404802		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000341116		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000429360		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000404393		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5CDS-5UTR	ENST00000442782	ENST00000397225		TCGA	RV	LIHC	TCGA-BC-A216-01A	TMPRSS6	chr22	37491591	-	MPST	chr22	37420233	+
5UTR-3CDS	ENST00000535420	ENST00000372759		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
5UTR-intron	ENST00000535420	ENST00000479131		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
5UTR-3CDS	ENST00000368426	ENST00000372759		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
5UTR-intron	ENST00000368426	ENST00000479131		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
3UTR-3CDS	ENST00000487542	ENST00000372759		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
3UTR-intron	ENST00000487542	ENST00000479131		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
5UTR-3CDS	ENST00000417934	ENST00000372759		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
5UTR-intron	ENST00000417934	ENST00000479131		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
intron-3CDS	ENST00000292176	ENST00000372759		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
intron-intron	ENST00000292176	ENST00000479131		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	ZBTB7B	chr1	154975419	+	ZMPSTE24	chr1	40733458	+
intron-3CDS	ENST00000339022	ENST00000394036		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3CDS	ENST00000339022	ENST00000394045		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3CDS	ENST00000339022	ENST00000348459		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3CDS	ENST00000339022	ENST00000371332		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3UTR	ENST00000339022	ENST00000239026		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-3UTR	ENST00000339022	ENST00000394044		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
intron-intron	ENST00000339022	ENST00000462057		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000285979	ENST00000394036		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
In-frame	ENST00000285979	ENST00000394045		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
In-frame	ENST00000285979	ENST00000348459		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
In-frame	ENST00000285979	ENST00000371332		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000285979	ENST00000239026		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000285979	ENST00000394044		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
5CDS-intron	ENST00000285979	ENST00000462057		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	CYP2C18	chr10	96466717	+	HELLS	chr10	96331145	+
3UTR-3CDS	ENST00000508198	ENST00000274026		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	FAM160A1	chr4	152403800	+	CCNA2	chr4	122742246	-
5UTR-3CDS	ENST00000435205	ENST00000274026		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	FAM160A1	chr4	152403800	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000505231	ENST00000274026		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	FAM160A1	chr4	152403800	+	CCNA2	chr4	122742246	-
Frame-shit	ENST00000377047	ENST00000377067		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	LIHC	TCGA-CC-A3M9-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000247933	ENST00000286190		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
Frame-shit	ENST00000247933	ENST00000405148		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
Frame-shit	ENST00000247933	ENST00000392257		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
Frame-shit	ENST00000247933	ENST00000439709		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
5CDS-intron	ENST00000247933	ENST00000448967		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000453894	ENST00000286190		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000453894	ENST00000405148		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000453894	ENST00000392257		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000453894	ENST00000439709		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-intron	ENST00000453894	ENST00000448967		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000509744	ENST00000286190		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000509744	ENST00000405148		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000509744	ENST00000392257		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000509744	ENST00000439709		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
3UTR-intron	ENST00000509744	ENST00000448967		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000514224	ENST00000286190		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000514224	ENST00000405148		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000514224	ENST00000392257		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000514224	ENST00000439709		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
intron-intron	ENST00000514224	ENST00000448967		TCGA	RV	LIHC	TCGA-DD-AAD5-01A	IDUA	chr4	981737	+	ALS2CR12	chr2	202154508	-
5UTR-intron	ENST00000361905	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000361905	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000361905	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000361905	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000527636	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000527636	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000527636	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000527636	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000527575	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000527575	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000527575	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000527575	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000334310	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000334310	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-5UTR	ENST00000334310	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
5UTR-intron	ENST00000334310	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000361985	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000361985	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000361985	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000361985	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000526600	ENST00000536306		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000526600	ENST00000543897		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-5UTR	ENST00000526600	ENST00000336229		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
intron-intron	ENST00000526600	ENST00000538116		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TEAD1	chr11	12697108	+	ZCCHC8	chr12	122968110	-
Frame-shit	ENST00000535206	ENST00000472232		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000467389		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000379704		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
Frame-shit	ENST00000379731	ENST00000472232		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000467389		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000379704		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-3CDS	ENST00000541851	ENST00000472232		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000467389		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000379704		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
In-frame	ENST00000602402	ENST00000375608		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000602402	ENST00000442652		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000602402	ENST00000375604		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000602402	ENST00000397030		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000602402	ENST00000535094		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000602402	ENST00000421756		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000602402	ENST00000375601		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000397036		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000434480		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000423482		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000375597		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000397024		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000480321		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000602402	ENST00000397021		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000375608		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000442652		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000375604		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000397030		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000535094		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000421756		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
In-frame	ENST00000376795	ENST00000375601		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000397036		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000434480		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000423482		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000375597		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000397024		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000480321		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
5CDS-intron	ENST00000376795	ENST00000397021		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	DNAJC3	chr13	96329591	+	MCF2L	chr13	113678958	+
intron-intron	ENST00000261425	ENST00000376861		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000334668		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000259951		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-3UTR	ENST00000261425	ENST00000440587		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000434407		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000475996		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000342322		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000552082		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000551026		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000383516		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000383515		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000496199		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000422711		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000551832		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000549067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000428296		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000420067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000485297		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000422439		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000490874		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000383626		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000550932		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000547132		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000383627		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000359076		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000489167		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000435058		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000551780		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000551347		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000445657		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000440590		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000490259		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000444891		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000549422		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000552880		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000549254		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000430472		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000376848		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261425	ENST00000463731		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000376861		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000334668		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000259951		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-3UTR	ENST00000508137	ENST00000440587		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000434407		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000475996		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000342322		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000552082		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000551026		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000383516		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000383515		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000496199		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000422711		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000551832		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000549067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000428296		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000420067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000485297		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000422439		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000490874		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000383626		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000550932		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000547132		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000383627		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000359076		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000489167		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000435058		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000551780		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000551347		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000445657		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000440590		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000490259		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000444891		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000549422		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000552880		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000549254		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000430472		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000376848		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000508137	ENST00000463731		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000376861		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000334668		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000259951		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-3UTR	ENST00000504108	ENST00000440587		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000434407		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000475996		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000342322		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000552082		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000551026		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000383516		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000383515		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000496199		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000422711		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000551832		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000549067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000428296		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000420067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000485297		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000422439		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000490874		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000383626		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000550932		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000547132		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000383627		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000359076		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000489167		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000435058		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000551780		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000551347		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000445657		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000440590		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000490259		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000444891		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000549422		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000552880		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000549254		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000430472		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000376848		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000504108	ENST00000463731		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000376861		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000334668		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000259951		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-3UTR	ENST00000359687	ENST00000440587		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000434407		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000475996		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000342322		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000552082		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000551026		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000383516		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000383515		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000496199		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000422711		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000551832		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000549067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000428296		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000420067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000485297		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000422439		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000490874		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000383626		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000550932		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000547132		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000383627		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000359076		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000489167		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000435058		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000551780		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000551347		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000445657		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000440590		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000490259		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000444891		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000549422		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000552880		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000549254		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000430472		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000376848		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000359687	ENST00000463731		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000376861		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000334668		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000259951		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-3UTR	ENST00000381930	ENST00000440587		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000434407		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000475996		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000342322		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000552082		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000551026		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000383516		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000383515		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000496199		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000422711		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000551832		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000549067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000428296		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000420067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000485297		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000422439		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000490874		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000383626		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000550932		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000547132		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000383627		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000359076		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000489167		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000435058		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000551780		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000551347		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000445657		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000440590		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000490259		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000444891		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000549422		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000552880		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000549254		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000430472		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000376848		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000381930	ENST00000463731		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000376861		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000334668		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000259951		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-3UTR	ENST00000261426	ENST00000440587		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000434407		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000475996		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000342322		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000552082		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000551026		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000383516		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000383515		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000496199		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000422711		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000551832		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000549067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000428296		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000420067		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000485297		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000422439		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000490874		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000383626		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000550932		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000547132		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000383627		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000359076		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000489167		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000435058		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000551780		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000551347		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000445657		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000440590		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000490259		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000444891		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000549422		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000552880		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000549254		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000430472		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000376848		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
intron-intron	ENST00000261426	ENST00000463731		TCGA	RV	LIHC	TCGA-DD-A4NO-01A	KLHL5	chr4	39128477	+	HLA-F	chr6	29705899	+
5CDS-intron	ENST00000358220	ENST00000530124		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000358220	ENST00000257247		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000358220	ENST00000525875		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000358220	ENST00000378024		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000381329	ENST00000530124		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000381329	ENST00000257247		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000381329	ENST00000525875		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000381329	ENST00000378024		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000263150	ENST00000530124		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000263150	ENST00000257247		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000263150	ENST00000525875		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000263150	ENST00000378024		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
intron-intron	ENST00000482165	ENST00000530124		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
intron-intron	ENST00000482165	ENST00000257247		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
intron-5UTR	ENST00000482165	ENST00000525875		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
intron-intron	ENST00000482165	ENST00000378024		TCGA	RV	LIHC	TCGA-BC-A217-01A	WDR37	chr10	1130478	+	AHNAK	chr11	62259303	-
intron-3CDS	ENST00000318560	ENST00000253008		TCGA	RV	LIHC	TCGA-CC-5263-01A	ABL1	chr9	133589842	+	PRDM12	chr9	133553916	+
5CDS-5UTR	ENST00000263401	ENST00000396402		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000263401	ENST00000260433		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000263401	ENST00000396404		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000263401	ENST00000559878		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000263401	ENST00000405913		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000263401	ENST00000557858		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000263401	ENST00000492852		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000452374	ENST00000396402		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000452374	ENST00000260433		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000452374	ENST00000396404		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000452374	ENST00000559878		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000452374	ENST00000405913		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000452374	ENST00000557858		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000452374	ENST00000492852		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000532705	ENST00000396402		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000532705	ENST00000260433		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000532705	ENST00000396404		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000532705	ENST00000559878		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000532705	ENST00000405913		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-5UTR	ENST00000532705	ENST00000557858		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
5CDS-intron	ENST00000532705	ENST00000492852		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-5UTR	ENST00000533308	ENST00000396402		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-5UTR	ENST00000533308	ENST00000260433		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-5UTR	ENST00000533308	ENST00000396404		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-5UTR	ENST00000533308	ENST00000559878		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-5UTR	ENST00000533308	ENST00000405913		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-5UTR	ENST00000533308	ENST00000557858		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-intron	ENST00000533308	ENST00000492852		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CYP19A1	chr15	51535147	-
intron-3CDS	ENST00000544095	ENST00000343846		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000544095	ENST00000366878		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000544095	ENST00000484758		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000544095	ENST00000494793		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000544095	ENST00000478605		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000544095	ENST00000454695		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000544095	ENST00000344029		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-intron	ENST00000544095	ENST00000366877		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000323825	ENST00000343846		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000323825	ENST00000366878		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000323825	ENST00000484758		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000323825	ENST00000494793		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000323825	ENST00000478605		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000323825	ENST00000454695		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000323825	ENST00000344029		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-intron	ENST00000323825	ENST00000366877		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
In-frame	ENST00000366899	ENST00000343846		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
In-frame	ENST00000366899	ENST00000366878		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
In-frame	ENST00000366899	ENST00000484758		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
In-frame	ENST00000366899	ENST00000494793		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000366899	ENST00000478605		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000366899	ENST00000454695		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000366899	ENST00000344029		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
5CDS-intron	ENST00000366899	ENST00000366877		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000468085	ENST00000343846		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000468085	ENST00000366878		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000468085	ENST00000484758		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000468085	ENST00000494793		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000468085	ENST00000478605		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000468085	ENST00000454695		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-5UTR	ENST00000468085	ENST00000344029		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
intron-intron	ENST00000468085	ENST00000366877		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DUSP10	chr1	221912276	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000222330	ENST00000222032		TCGA	RV	LIHC	TCGA-2V-A95S-01A	GSK3A	chr19	42736209	-	CNFN	chr19	42893191	-
5CDS-5UTR	ENST00000222330	ENST00000597255		TCGA	RV	LIHC	TCGA-2V-A95S-01A	GSK3A	chr19	42736209	-	CNFN	chr19	42893191	-
5CDS-5UTR	ENST00000398249	ENST00000222032		TCGA	RV	LIHC	TCGA-2V-A95S-01A	GSK3A	chr19	42736209	-	CNFN	chr19	42893191	-
5CDS-5UTR	ENST00000398249	ENST00000597255		TCGA	RV	LIHC	TCGA-2V-A95S-01A	GSK3A	chr19	42736209	-	CNFN	chr19	42893191	-
5UTR-3CDS	ENST00000264501	ENST00000274026		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000455637	ENST00000274026		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000388738	ENST00000274026		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000495260	ENST00000274026		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
5UTR-3UTR	ENST00000401950	ENST00000371497		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000401950	ENST00000603338		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000401950	ENST00000329613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000333027	ENST00000371497		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000333027	ENST00000603338		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000333027	ENST00000329613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000323630	ENST00000371497		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000323630	ENST00000603338		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000323630	ENST00000329613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000351488	ENST00000371497		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000351488	ENST00000603338		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000351488	ENST00000329613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000406629	ENST00000371497		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000406629	ENST00000603338		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000406629	ENST00000329613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000415511	ENST00000371497		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000415511	ENST00000603338		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000415511	ENST00000329613		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MTMR3	chr22	30279348	+	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000302746	ENST00000295966		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
Frame-shit	ENST00000302746	ENST00000482387		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000302746	ENST00000472469		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000302746	ENST00000491845		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000302746	ENST00000478363		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
Frame-shit	ENST00000485460	ENST00000295966		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
Frame-shit	ENST00000485460	ENST00000482387		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000485460	ENST00000472469		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000485460	ENST00000491845		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000485460	ENST00000478363		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
Frame-shit	ENST00000474765	ENST00000295966		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
Frame-shit	ENST00000474765	ENST00000482387		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000474765	ENST00000472469		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000474765	ENST00000491845		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
5CDS-intron	ENST00000474765	ENST00000478363		TCGA	RV	LIHC	TCGA-DD-A73A-01A	PDHB	chr3	58415435	-	C3orf67	chr3	58739590	-
Frame-shit	ENST00000378308	ENST00000535539		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
Frame-shit	ENST00000378308	ENST00000378438		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
In-frame	ENST00000378308	ENST00000544975		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
5CDS-intron	ENST00000378308	ENST00000486558		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
5CDS-intron	ENST00000378308	ENST00000535777		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
Frame-shit	ENST00000324545	ENST00000535539		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
Frame-shit	ENST00000324545	ENST00000378438		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
In-frame	ENST00000324545	ENST00000544975		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
5CDS-intron	ENST00000324545	ENST00000486558		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
5CDS-intron	ENST00000324545	ENST00000535777		TCGA	RV	LIHC	TCGA-FV-A496-01A	USP9X	chrX	41031211	+	ATP6AP2	chrX	40464813	+
5CDS-intron	ENST00000325241	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325241	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000544249	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000446747	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000525266	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000325217	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000529819	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
intron-intron	ENST00000532393	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528372	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000477496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000460856		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000240874		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000360013		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000393496		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000291478		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000428018		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000459915		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-intron	ENST00000528130	ENST00000462213		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ZNF7	chr8	146054989	+	KALRN	chr3	124113982	+
5CDS-5UTR	ENST00000359206	ENST00000454545		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000359206	ENST00000437356		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000359206	ENST00000295658		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000359206	ENST00000406027		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000358400	ENST00000454545		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000358400	ENST00000437356		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000358400	ENST00000295658		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000358400	ENST00000406027		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000265723	ENST00000454545		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000265723	ENST00000437356		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000265723	ENST00000295658		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000265723	ENST00000406027		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000545634	ENST00000454545		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000545634	ENST00000437356		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000545634	ENST00000295658		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000545634	ENST00000406027		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000453593	ENST00000454545		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000453593	ENST00000437356		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-intron	ENST00000453593	ENST00000295658		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000453593	ENST00000406027		TCGA	RV	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076350	-	TMEM169	chr2	216946870	+
5CDS-5UTR	ENST00000355431	ENST00000555166		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000355431	ENST00000556492		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000355431	ENST00000554703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000348476	ENST00000555166		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000348476	ENST00000556492		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000348476	ENST00000554703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000395168	ENST00000555166		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000395168	ENST00000556492		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000395168	ENST00000554703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000431317	ENST00000555166		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000431317	ENST00000556492		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
5CDS-5UTR	ENST00000431317	ENST00000554703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
intron-5UTR	ENST00000553355	ENST00000555166		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
intron-5UTR	ENST00000553355	ENST00000556492		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
intron-5UTR	ENST00000553355	ENST00000554703		TCGA	RV	LIHC	TCGA-BD-A3ER-01A	ARID4A	chr14	58766578	+	NAA30	chr14	57863470	+
In-frame	ENST00000318528	ENST00000521689		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000318528	ENST00000254898		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000318528	ENST00000524308		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000318528	ENST00000522025		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000318528	ENST00000520016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
5CDS-intron	ENST00000318528	ENST00000518238		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000545282	ENST00000521689		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000545282	ENST00000254898		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000545282	ENST00000524308		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000545282	ENST00000522025		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000545282	ENST00000520016		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
5CDS-intron	ENST00000545282	ENST00000518238		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	C8orf47	chr8	99076955	+	MATN2	chr8	99042690	+
In-frame	ENST00000374379	ENST00000263245		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	ARFGAP3	chr22	43243638	-
In-frame	ENST00000374379	ENST00000429508		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	ARFGAP3	chr22	43243638	-
In-frame	ENST00000374379	ENST00000437119		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	ARFGAP3	chr22	43243638	-
3UTR-3CDS	ENST00000497755	ENST00000263245		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	ARFGAP3	chr22	43243638	-
3UTR-3CDS	ENST00000497755	ENST00000429508		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	ARFGAP3	chr22	43243638	-
3UTR-3CDS	ENST00000497755	ENST00000437119		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	ARFGAP3	chr22	43243638	-
In-frame	ENST00000274217	ENST00000265104		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	FAM105A	chr5	14602441	+	DNAH5	chr5	13917365	-
5CDS-intron	ENST00000274217	ENST00000504001		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	FAM105A	chr5	14602441	+	DNAH5	chr5	13917365	-
intron-3CDS	ENST00000506258	ENST00000265104		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	FAM105A	chr5	14602441	+	DNAH5	chr5	13917365	-
intron-intron	ENST00000506258	ENST00000504001		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	FAM105A	chr5	14602441	+	DNAH5	chr5	13917365	-
intron-3CDS	ENST00000514455	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000514455	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000511566	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000511566	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000376817	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000376817	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000512805	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000512805	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000504726	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000504726	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000511900	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000511900	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000456394	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000456394	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000505461	ENST00000233242		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
intron-3CDS	ENST00000505461	ENST00000399256		TCGA	RV	LIHC	TCGA-CC-A3MC-01A	GNB2L1	chr5	180663934	-	APOB	chr2	21250937	-
Frame-shit	ENST00000246190	ENST00000409299		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000246190	ENST00000344022		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000246190	ENST00000217398		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000375238	ENST00000409299		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000375238	ENST00000344022		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000375238	ENST00000217398		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
intron-3CDS	ENST00000606525	ENST00000409299		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
intron-3CDS	ENST00000606525	ENST00000344022		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
intron-3CDS	ENST00000606525	ENST00000217398		TCGA	RV	LIHC	TCGA-CC-5263-01A	NECAB3	chr20	32257181	-	PXMP4	chr20	32302542	-
5CDS-3UTR	ENST00000216455	ENST00000245865		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000216455	ENST00000375840		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000216455	ENST00000392950		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000216455	ENST00000336174		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000216455	ENST00000447001		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000216455	ENST00000582137		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-5UTR	ENST00000216455	ENST00000580039		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-intron	ENST00000216455	ENST00000579340		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000412908	ENST00000245865		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000412908	ENST00000375840		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000412908	ENST00000392950		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000412908	ENST00000336174		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000412908	ENST00000447001		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000412908	ENST00000582137		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-5UTR	ENST00000412908	ENST00000580039		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-intron	ENST00000412908	ENST00000579340		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000557508	ENST00000245865		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000557508	ENST00000375840		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000557508	ENST00000392950		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000557508	ENST00000336174		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000557508	ENST00000447001		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-3UTR	ENST00000557508	ENST00000582137		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-5UTR	ENST00000557508	ENST00000580039		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
5CDS-intron	ENST00000557508	ENST00000579340		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-3UTR	ENST00000554456	ENST00000245865		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-3UTR	ENST00000554456	ENST00000375840		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-3UTR	ENST00000554456	ENST00000392950		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-3UTR	ENST00000554456	ENST00000336174		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-3UTR	ENST00000554456	ENST00000447001		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-3UTR	ENST00000554456	ENST00000582137		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-5UTR	ENST00000554456	ENST00000580039		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
intron-intron	ENST00000554456	ENST00000579340		TCGA	RV	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781111	-
In-frame	ENST00000394752	ENST00000296292		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
In-frame	ENST00000394752	ENST00000394738		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
Frame-shit	ENST00000394750	ENST00000296292		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
Frame-shit	ENST00000394750	ENST00000394738		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
Frame-shit	ENST00000358080	ENST00000296292		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
Frame-shit	ENST00000358080	ENST00000394738		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
In-frame	ENST00000296295	ENST00000296292		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
In-frame	ENST00000296295	ENST00000394738		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000470575	ENST00000296292		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000470575	ENST00000394738		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	SFMBT1	chr3	52977369	-	RFT1	chr3	53133502	-
5UTR-3CDS	ENST00000494857	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000494857	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000494857	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000494857	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-intron	ENST00000494857	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000522656	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000522656	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000522656	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000522656	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-intron	ENST00000522656	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000470360	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000470360	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000470360	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000470360	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
5UTR-intron	ENST00000470360	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000004531	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000004531	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000004531	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000004531	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-intron	ENST00000004531	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000398090	ENST00000310581		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000398090	ENST00000296820		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000398090	ENST00000334602		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000398090	ENST00000508104		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
intron-intron	ENST00000398090	ENST00000522877		TCGA	RV	LIHC	TCGA-DD-A73C-01A	SLC7A2	chr8	17359811	+	TERT	chr5	1282739	-
3UTR-3CDS	ENST00000491455	ENST00000498508		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
3UTR-3CDS	ENST00000491455	ENST00000366958		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
3UTR-3CDS	ENST00000491455	ENST00000435016		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
3UTR-3CDS	ENST00000491455	ENST00000261454		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
3UTR-intron	ENST00000491455	ENST00000607726		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000415093	ENST00000498508		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
In-frame	ENST00000415093	ENST00000366958		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000415093	ENST00000435016		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000415093	ENST00000261454		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
5CDS-intron	ENST00000415093	ENST00000607726		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000366957	ENST00000498508		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
In-frame	ENST00000366957	ENST00000366958		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000366957	ENST00000435016		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000366957	ENST00000261454		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
5CDS-intron	ENST00000366957	ENST00000607726		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	SMYD2	chr1	214501067	+	PROX1	chr1	214208992	+
Frame-shit	ENST00000006658	ENST00000268933		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-intron	ENST00000006658	ENST00000515028		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-3UTR	ENST00000006658	ENST00000541226		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-3UTR	ENST00000006658	ENST00000537145		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
Frame-shit	ENST00000356488	ENST00000268933		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-intron	ENST00000356488	ENST00000515028		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-3UTR	ENST00000356488	ENST00000541226		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-3UTR	ENST00000356488	ENST00000537145		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
Frame-shit	ENST00000393244	ENST00000268933		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-intron	ENST00000393244	ENST00000515028		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-3UTR	ENST00000393244	ENST00000541226		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
5CDS-3UTR	ENST00000393244	ENST00000537145		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
3UTR-3CDS	ENST00000511937	ENST00000268933		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
3UTR-intron	ENST00000511937	ENST00000515028		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
3UTR-3UTR	ENST00000511937	ENST00000541226		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
3UTR-3UTR	ENST00000511937	ENST00000537145		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	SPATA20	chr17	48625979	+	EPN3	chr17	48619205	+
Frame-shit	ENST00000534894	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000534894	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000534894	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000536810	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000536810	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000536810	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000545257	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000545257	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000545257	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000355995	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000355995	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000355995	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000543371	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000543371	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000543371	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000355717	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000355717	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000355717	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000538897	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000538897	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000538897	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000349937	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000349937	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000349937	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369397	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369397	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000369397	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000352065	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000352065	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000352065	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369395	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369395	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000369395	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5UTR-3CDS	ENST00000542695	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5UTR-3CDS	ENST00000542695	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5UTR-intron	ENST00000542695	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000369389	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000369389	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-intron	ENST00000369389	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000369386	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000369386	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-intron	ENST00000369386	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000466338	ENST00000432306		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000466338	ENST00000393077		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
intron-intron	ENST00000466338	ENST00000483122		TCGA	RV	LIHC	TCGA-DD-AAE4-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114427977	+
5CDS-5UTR	ENST00000297785	ENST00000351325		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000589209		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000455515		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000588715		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000588607		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000588081		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000351325		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000589209		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000455515		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000588715		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000588607		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000588081		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000351325		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000589209		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000455515		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000588715		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000588607		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000588081		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000356654	ENST00000541477		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
intron-5UTR	ENST00000356654	ENST00000229277		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
intron-5UTR	ENST00000356654	ENST00000538763		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
intron-5UTR	ENST00000356654	ENST00000544774		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
intron-5UTR	ENST00000356654	ENST00000545045		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
intron-5UTR	ENST00000356654	ENST00000535366		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
intron-intron	ENST00000356654	ENST00000534977		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-5UTR	ENST00000396684	ENST00000541477		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-5UTR	ENST00000396684	ENST00000229277		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-5UTR	ENST00000396684	ENST00000538763		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-5UTR	ENST00000396684	ENST00000544774		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-5UTR	ENST00000396684	ENST00000545045		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-5UTR	ENST00000396684	ENST00000535366		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-intron	ENST00000396684	ENST00000534977		TCGA	RV	LIHC	TCGA-BC-A217-01A	ATN1	chr12	7037547	+	ENO2	chr12	7024985	+
5UTR-3CDS	ENST00000361654	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-3CDS	ENST00000361654	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-intron	ENST00000361654	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000545889	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000545889	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000545889	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000302528	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000302528	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000302528	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-3CDS	ENST00000358808	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-3CDS	ENST00000358808	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-intron	ENST00000358808	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-3CDS	ENST00000537178	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-3CDS	ENST00000537178	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5UTR-intron	ENST00000537178	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540338	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540338	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000540338	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000536634	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000536634	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000536634	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540539	ENST00000331738		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540539	ENST00000354654		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000540539	ENST00000392442		TCGA	RV	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122907068	-	RSRC2	chr12	122999774	-
5CDS-5UTR	ENST00000379561	ENST00000498078		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	FOXO1	chr13	41239720	-	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000379561	ENST00000323563		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	FOXO1	chr13	41239720	-	MRPS31	chr13	41303737	-
intron-5UTR	ENST00000473775	ENST00000498078		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	FOXO1	chr13	41239720	-	MRPS31	chr13	41303737	-
intron-5UTR	ENST00000473775	ENST00000323563		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	FOXO1	chr13	41239720	-	MRPS31	chr13	41303737	-
In-frame	ENST00000340473	ENST00000377067		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	GTF2F2	chr13	45694856	+	GPC5	chr13	92797083	+
5CDS-intron	ENST00000340473	ENST00000483422		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	GTF2F2	chr13	45694856	+	GPC5	chr13	92797083	+
intron-3CDS	ENST00000494087	ENST00000377067		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	GTF2F2	chr13	45694856	+	GPC5	chr13	92797083	+
intron-intron	ENST00000494087	ENST00000483422		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	GTF2F2	chr13	45694856	+	GPC5	chr13	92797083	+
5UTR-3CDS	ENST00000264501	ENST00000274026		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000455637	ENST00000274026		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000388738	ENST00000274026		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
intron-3CDS	ENST00000495260	ENST00000274026		TCGA	RV	LIHC	TCGA-CC-5263-01A	KIAA1109	chr4	123075267	+	CCNA2	chr4	122742246	-
5UTR-5UTR	ENST00000383737	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
5UTR-5UTR	ENST00000395734	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
5UTR-5UTR	ENST00000426837	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
5UTR-5UTR	ENST00000360240	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
5UTR-5UTR	ENST00000439356	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000264724	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000420772	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000441748	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000462206	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000434267	ENST00000607778		TCGA	RV	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158591502	+
5UTR-5UTR	ENST00000427410	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000427410	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000427410	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000427410	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000427410	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000447388	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000447388	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000447388	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000447388	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000447388	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000425457	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000425457	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000425457	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000425457	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000425457	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000456393	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000456393	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000456393	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000456393	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000456393	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000372654	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000372654	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000372654	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000372654	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000372654	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372653	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372653	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000372653	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000372653	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372653	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372652	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372652	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000372652	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000372652	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372652	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372651	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372651	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000372651	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000372651	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000372651	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000440226	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000440226	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000440226	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000440226	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000440226	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000308733	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000308733	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000308733	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000308733	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000308733	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000483091	ENST00000535420		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000483091	ENST00000368426		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000483091	ENST00000487542		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000483091	ENST00000417934		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000483091	ENST00000292176		TCGA	RV	LIHC	TCGA-DD-A4NE-01A	NFYC	chr1	41157539	+	ZBTB7B	chr1	154987131	+
Frame-shit	ENST00000256190	ENST00000378618		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000256190	ENST00000536126		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000256190	ENST00000278460		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000256190	ENST00000395460		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000256190	ENST00000378615		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
5CDS-intron	ENST00000256190	ENST00000543718		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
5CDS-3UTR	ENST00000256190	ENST00000527268		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-3CDS	ENST00000527019	ENST00000378618		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-5UTR	ENST00000527019	ENST00000536126		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-5UTR	ENST00000527019	ENST00000278460		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-5UTR	ENST00000527019	ENST00000395460		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-5UTR	ENST00000527019	ENST00000378615		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-intron	ENST00000527019	ENST00000543718		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
intron-3UTR	ENST00000527019	ENST00000527268		TCGA	RV	LIHC	TCGA-DD-AADP-01A	SBF2	chr11	10215449	-	C11orf49	chr11	47073939	+
Frame-shit	ENST00000393446	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393446	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393446	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393446	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000265437	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000265437	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000265437	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000265437	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000393451	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393451	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393451	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393451	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000393449	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393449	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393449	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393449	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000323984	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000323984	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000323984	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000323984	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000432298	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000432298	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000432298	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000432298	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000422922	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000422922	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000422922	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000422922	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000487459	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000487459	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000487459	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000487459	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393443	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393443	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393443	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393443	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393447	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393447	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393447	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393447	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393444	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393444	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393444	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393444	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000465133	ENST00000361183		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000465133	ENST00000458284		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000465133	ENST00000490693		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000465133	ENST00000466023		TCGA	RV	LIHC	TCGA-DD-AACN-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
In-frame	ENST00000374994	ENST00000375001		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
5CDS-intron	ENST00000374994	ENST00000467052		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
In-frame	ENST00000374990	ENST00000375001		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
5CDS-intron	ENST00000374990	ENST00000467052		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
In-frame	ENST00000552516	ENST00000375001		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
5CDS-intron	ENST00000552516	ENST00000467052		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
In-frame	ENST00000550253	ENST00000375001		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
5CDS-intron	ENST00000550253	ENST00000467052		TCGA	RV	LIHC	TCGA-RC-A6M3-01A	TGFBR1	chr9	101910066	+	COL15A1	chr9	101777699	+
5CDS-3UTR	ENST00000536468	ENST00000485732		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000536468	ENST00000317446		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000536468	ENST00000445819		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000247668	ENST00000485732		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000247668	ENST00000317446		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000247668	ENST00000445819		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000359662	ENST00000485732		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000359662	ENST00000317446		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-3UTR	ENST00000359662	ENST00000445819		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
3UTR-3UTR	ENST00000482854	ENST00000485732		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
3UTR-3UTR	ENST00000482854	ENST00000317446		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
3UTR-3UTR	ENST00000482854	ENST00000445819		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	TRAF2	chr9	139804446	+	MAMDC4	chr9	139748663	+
5CDS-5UTR	ENST00000449910	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000449910	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000449910	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000449910	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368412	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000359280	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000356955	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000355956	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000360674	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368410	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000271836	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000368413	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000531455	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5CDS-5UTR	ENST00000447332	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000392480		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000295542		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000423025		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
3UTR-5UTR	ENST00000472434	ENST00000368419		TCGA	RV	LIHC	TCGA-DD-A115-01A	ADAM15	chr1	155025253	+	DCST1	chr1	155006448	+
5UTR-3CDS	ENST00000560302	ENST00000506838		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000560302	ENST00000505477		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000560302	ENST00000511290		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000560302	ENST00000400159		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000394518	ENST00000506838		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000394518	ENST00000505477		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000394518	ENST00000511290		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000394518	ENST00000400159		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000361243	ENST00000506838		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000361243	ENST00000505477		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000361243	ENST00000511290		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5UTR-3CDS	ENST00000361243	ENST00000400159		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000560579	ENST00000506838		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000560579	ENST00000505477		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000560579	ENST00000511290		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000560579	ENST00000400159		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000394510	ENST00000506838		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000394510	ENST00000505477		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000394510	ENST00000511290		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
intron-3CDS	ENST00000394510	ENST00000400159		TCGA	RV	LIHC	TCGA-BC-A217-01A	AKAP13	chr15	85924029	+	MYL5	chr4	675682	+
5CDS-intron	ENST00000299980	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000299980	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000299980	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000299980	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000299980	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000423132	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000423132	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000423132	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000423132	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000423132	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000433195	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000433195	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000433195	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000433195	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000433195	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000569748	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000569748	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000569748	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000569748	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000569748	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000393512	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000393512	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000393512	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000393512	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000393512	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000570297	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000570297	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000570297	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-5UTR	ENST00000570297	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-5UTR	ENST00000570297	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000564155	ENST00000537792		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000564155	ENST00000537465		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000564155	ENST00000237353		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-5UTR	ENST00000564155	ENST00000355636		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
intron-5UTR	ENST00000564155	ENST00000543746		TCGA	RV	LIHC	TCGA-DD-A73C-01A	AP1G1	chr16	71803526	-	PMFBP1	chr16	72188358	-
In-frame	ENST00000066544	ENST00000502492		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
In-frame	ENST00000066544	ENST00000290330		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5CDS-intron	ENST00000066544	ENST00000514089		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
In-frame	ENST00000531206	ENST00000502492		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
In-frame	ENST00000531206	ENST00000290330		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5CDS-intron	ENST00000531206	ENST00000514089		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5UTR-3CDS	ENST00000446365	ENST00000502492		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5UTR-3CDS	ENST00000446365	ENST00000290330		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5UTR-intron	ENST00000446365	ENST00000514089		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
In-frame	ENST00000527547	ENST00000502492		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
In-frame	ENST00000527547	ENST00000290330		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5CDS-intron	ENST00000527547	ENST00000514089		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
intron-3CDS	ENST00000528748	ENST00000502492		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
intron-3CDS	ENST00000528748	ENST00000290330		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
intron-intron	ENST00000528748	ENST00000514089		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	CDC27	chr17	45266512	-	SNF8	chr17	47018424	-
5CDS-intron	ENST00000252486	ENST00000261531		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	APOE	chr19	45412650	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000252486	ENST00000554775		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	APOE	chr19	45412650	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000252486	ENST00000555761		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	APOE	chr19	45412650	+	SNW1	chr14	78189203	-
In-frame	ENST00000261349	ENST00000535902		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
In-frame	ENST00000261349	ENST00000396349		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
Frame-shit	ENST00000261349	ENST00000545735		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
In-frame	ENST00000543091	ENST00000535902		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
In-frame	ENST00000543091	ENST00000396349		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
Frame-shit	ENST00000543091	ENST00000545735		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
intron-3CDS	ENST00000540415	ENST00000535902		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
intron-3CDS	ENST00000540415	ENST00000396349		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
intron-3CDS	ENST00000540415	ENST00000545735		TCGA	RV	LIHC	TCGA-BC-A216-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12483892	-
5CDS-3UTR	ENST00000281928	ENST00000257572		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MED13L	chr12	116714865	-	HRK	chr12	117299271	-
5CDS-5UTR	ENST00000281928	ENST00000552092		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MED13L	chr12	116714865	-	HRK	chr12	117299271	-
5UTR-3UTR	ENST00000551197	ENST00000257572		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MED13L	chr12	116714865	-	HRK	chr12	117299271	-
5UTR-5UTR	ENST00000551197	ENST00000552092		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	MED13L	chr12	116714865	-	HRK	chr12	117299271	-
5CDS-3UTR	ENST00000563679	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000563679	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000325823	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000325823	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000447912	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000447912	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000535621	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000535621	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000455313	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000455313	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000396410	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000396410	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000569715	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000569715	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-3UTR	ENST00000450288	ENST00000564912		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000568908		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000568909		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000567835		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000562631		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000538815		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000456916		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000388812		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000388813		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000562558		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000544297		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000540164		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000379694		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
5CDS-5UTR	ENST00000450288	ENST00000379696		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PDXDC1	chr16	15092262	+	GPR56	chr16	57684165	+
In-frame	ENST00000356151	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000356151	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000356151	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000356151	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000356151	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000356151	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000356151	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000356151	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000356151	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000302779	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000302779	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000302779	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000302779	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000302779	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000302779	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000302779	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000302779	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000302779	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383716	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383716	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383716	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383716	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383716	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383716	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383716	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383716	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000383716	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000463280	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000463280	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000463280	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000463280	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000463280	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000463280	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000463280	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000463280	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000463280	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383715	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383715	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383715	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000383715	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383715	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383715	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383715	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000383715	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000383715	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000484288	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000484288	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000484288	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000484288	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000484288	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000484288	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000484288	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000484288	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000484288	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000479241	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000479241	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000479241	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
In-frame	ENST00000479241	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000479241	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000479241	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000479241	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-3UTR	ENST00000479241	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-intron	ENST00000479241	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3CDS	ENST00000536660	ENST00000490882		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3CDS	ENST00000536660	ENST00000429972		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3CDS	ENST00000536660	ENST00000295956		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3CDS	ENST00000536660	ENST00000358537		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3UTR	ENST00000536660	ENST00000357272		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3UTR	ENST00000536660	ENST00000348383		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3UTR	ENST00000536660	ENST00000493452		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-3UTR	ENST00000536660	ENST00000419752		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5UTR-intron	ENST00000536660	ENST00000484981		TCGA	RV	LIHC	TCGA-DD-A73F-01A	PXK	chr3	58318817	+	FLNB	chr3	58145281	+
5CDS-5UTR	ENST00000430249	ENST00000450993		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
5CDS-5UTR	ENST00000430249	ENST00000417849		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
5CDS-5UTR	ENST00000430249	ENST00000432688		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
5CDS-5UTR	ENST00000233072	ENST00000450993		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
5CDS-5UTR	ENST00000233072	ENST00000417849		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
5CDS-5UTR	ENST00000233072	ENST00000432688		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
intron-5UTR	ENST00000451903	ENST00000450993		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
intron-5UTR	ENST00000451903	ENST00000417849		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
intron-5UTR	ENST00000451903	ENST00000432688		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
intron-5UTR	ENST00000497121	ENST00000450993		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
intron-5UTR	ENST00000497121	ENST00000417849		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
intron-5UTR	ENST00000497121	ENST00000432688		TCGA	RV	LIHC	TCGA-WJ-A86L-01A	CPS1	chr2	211444494	+	PLCD4	chr2	219480430	+
In-frame	ENST00000585892	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000585892	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000585892	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000314646	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000314646	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000314646	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000359692	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000359692	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000359692	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000389253	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000389253	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000389253	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000355667	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000355667	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000355667	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000408974	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
Frame-shit	ENST00000408974	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
In-frame	ENST00000408974	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
intron-3CDS	ENST00000591819	ENST00000301455		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
intron-3CDS	ENST00000591819	ENST00000541807		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
intron-3CDS	ENST00000591819	ENST00000393962		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	DNM2	chr19	10829079	+	ANGPTL4	chr19	8438589	+
intron-5UTR	ENST00000367661	ENST00000475338		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PAPPA2	chr1	176740316	+	ACBD6	chr1	180257652	-
intron-5UTR	ENST00000367661	ENST00000367595		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PAPPA2	chr1	176740316	+	ACBD6	chr1	180257652	-
5CDS-5UTR	ENST00000367662	ENST00000475338		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PAPPA2	chr1	176740316	+	ACBD6	chr1	180257652	-
5CDS-5UTR	ENST00000367662	ENST00000367595		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PAPPA2	chr1	176740316	+	ACBD6	chr1	180257652	-
intron-5UTR	ENST00000486075	ENST00000475338		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PAPPA2	chr1	176740316	+	ACBD6	chr1	180257652	-
intron-5UTR	ENST00000486075	ENST00000367595		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	PAPPA2	chr1	176740316	+	ACBD6	chr1	180257652	-
Frame-shit	ENST00000311129	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000311129	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000311129	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000311129	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000311129	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000426998	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000426998	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000426998	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000426998	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000426998	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
intron-3CDS	ENST00000530787	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
intron-3CDS	ENST00000530787	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
intron-5UTR	ENST00000530787	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
intron-3UTR	ENST00000530787	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
intron-intron	ENST00000530787	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000527614	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000527614	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000527614	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000527614	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000527614	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000427203	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000427203	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000427203	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000427203	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000427203	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000341980	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000341980	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000341980	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000341980	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000341980	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000393055	ENST00000531154		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000393055	ENST00000398006		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000393055	ENST00000527228		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000393055	ENST00000524880		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000393055	ENST00000527377		TCGA	RV	LIHC	TCGA-DD-A73G-01A	PPP2R1B	chr11	111618678	-	ALG9	chr11	111680497	-
In-frame	ENST00000349703	ENST00000273857		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000349703	ENST00000508498		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000349703	ENST00000502252		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000349703	ENST00000505909		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000349703	ENST00000504584		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5CDS-intron	ENST00000349703	ENST00000515827		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000381897	ENST00000273857		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000381897	ENST00000508498		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000381897	ENST00000502252		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000381897	ENST00000505909		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
In-frame	ENST00000381897	ENST00000504584		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5CDS-intron	ENST00000381897	ENST00000515827		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5UTR-3CDS	ENST00000418436	ENST00000273857		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5UTR-3CDS	ENST00000418436	ENST00000508498		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5UTR-3CDS	ENST00000418436	ENST00000502252		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5UTR-3CDS	ENST00000418436	ENST00000505909		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5UTR-3CDS	ENST00000418436	ENST00000504584		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
5UTR-intron	ENST00000418436	ENST00000515827		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47680071	-
Frame-shit	ENST00000440909	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000448921	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000437397	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000355814	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000393087	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000393088	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000404814	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000449399	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000402629	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000555289	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000540593	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000540593	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000540593	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000540593	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000540593	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000324593	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000324593	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000324593	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000324593	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000324593	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
3UTR-3CDS	ENST00000412490	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
3UTR-3CDS	ENST00000412490	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
3UTR-3CDS	ENST00000412490	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
3UTR-intron	ENST00000412490	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
3UTR-intron	ENST00000412490	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000442160	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000442160	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000442160	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000442160	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000442160	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000555044	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000555044	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000555044	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000555044	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000555044	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000334521	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000334521	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
Frame-shit	ENST00000334521	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000334521	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000334521	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
In-frame	ENST00000556797	ENST00000446014		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
In-frame	ENST00000556797	ENST00000304283		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
In-frame	ENST00000556797	ENST00000585773		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000556797	ENST00000450067		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000556797	ENST00000592711		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	ZNF410	chr14	74364965	+	ANKS3	chr16	4748063	-
5CDS-intron	ENST00000355827	ENST00000355117		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000540841		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000540178		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000360409		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000417189		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000357118		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000357785		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000272849		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000412873		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000355827	ENST00000485684		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000355117		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000540841		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000540178		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000360409		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000417189		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000357118		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000357785		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000272849		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000412873		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373054	ENST00000485684		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000355117		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000540841		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000540178		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000360409		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000417189		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000357118		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000357785		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000272849		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000412873		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373061	ENST00000485684		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000355117		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000540841		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000540178		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000360409		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000417189		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000357118		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000357785		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000272849		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000412873		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000373049	ENST00000485684		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000355117		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000540841		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000540178		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000360409		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000417189		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000357118		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000357785		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000272849		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000412873		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
5CDS-intron	ENST00000324765	ENST00000485684		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	DIAPH2	chrX	95940189	+	NRP2	chr2	206656959	+
In-frame	ENST00000374553	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
5CDS-intron	ENST00000374553	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
In-frame	ENST00000374552	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
5CDS-intron	ENST00000374552	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
In-frame	ENST00000524573	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
5CDS-intron	ENST00000524573	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
In-frame	ENST00000525810	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
5CDS-intron	ENST00000525810	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
In-frame	ENST00000527388	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
5CDS-intron	ENST00000527388	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
3UTR-3CDS	ENST00000502251	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
3UTR-intron	ENST00000502251	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
In-frame	ENST00000338901	ENST00000374900		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
5CDS-intron	ENST00000338901	ENST00000491179		TCGA	RV	LIHC	TCGA-ED-A82E-01A	EDA	chrX	68836548	+	FAAH2	chrX	57318931	+
Frame-shit	ENST00000514985	ENST00000300006		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
Frame-shit	ENST00000514985	ENST00000566490		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
Frame-shit	ENST00000514985	ENST00000452191		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
Frame-shit	ENST00000514985	ENST00000561692		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
5CDS-3UTR	ENST00000514985	ENST00000565913		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000511224	ENST00000300006		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000511224	ENST00000566490		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000511224	ENST00000452191		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000511224	ENST00000561692		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3UTR	ENST00000511224	ENST00000565913		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000506577	ENST00000300006		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000506577	ENST00000566490		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000506577	ENST00000452191		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000506577	ENST00000561692		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3UTR	ENST00000506577	ENST00000565913		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000507920	ENST00000300006		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000507920	ENST00000566490		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000507920	ENST00000452191		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000507920	ENST00000561692		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3UTR	ENST00000507920	ENST00000565913		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000509276	ENST00000300006		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000509276	ENST00000566490		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000509276	ENST00000452191		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3CDS	ENST00000509276	ENST00000561692		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
intron-3UTR	ENST00000509276	ENST00000565913		TCGA	RV	LIHC	TCGA-BC-A10X-01A	SEPP1	chr5	42799982	-	C16orf45	chr16	15675074	+
5UTR-3CDS	ENST00000240095	ENST00000434536		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-3CDS	ENST00000240095	ENST00000252512		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-intron	ENST00000240095	ENST00000518017		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-intron	ENST00000240095	ENST00000433566		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-3CDS	ENST00000359741	ENST00000434536		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-3CDS	ENST00000359741	ENST00000252512		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-intron	ENST00000359741	ENST00000518017		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-intron	ENST00000359741	ENST00000433566		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-3CDS	ENST00000381237	ENST00000434536		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-3CDS	ENST00000381237	ENST00000252512		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-intron	ENST00000381237	ENST00000518017		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
5UTR-intron	ENST00000381237	ENST00000433566		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
intron-3CDS	ENST00000289952	ENST00000434536		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
intron-3CDS	ENST00000289952	ENST00000252512		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
intron-intron	ENST00000289952	ENST00000518017		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
intron-intron	ENST00000289952	ENST00000433566		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	SLC39A14	chr8	22224921	+	XPO7	chr8	21856266	+
Frame-shit	ENST00000349769	ENST00000530124		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
In-frame	ENST00000349769	ENST00000257247		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
5CDS-5UTR	ENST00000349769	ENST00000525875		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
5CDS-intron	ENST00000349769	ENST00000378024		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000531727	ENST00000530124		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
intron-3CDS	ENST00000531727	ENST00000257247		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
intron-5UTR	ENST00000531727	ENST00000525875		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
intron-intron	ENST00000531727	ENST00000378024		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CPSF1	chr8	145620650	-	AHNAK	chr11	62201363	-
Frame-shit	ENST00000341516	ENST00000557016		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
5CDS-5UTR	ENST00000341516	ENST00000216520		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
5CDS-5UTR	ENST00000341516	ENST00000555373		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-3CDS	ENST00000554215	ENST00000557016		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-5UTR	ENST00000554215	ENST00000216520		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-5UTR	ENST00000554215	ENST00000555373		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-3CDS	ENST00000556847	ENST00000557016		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-5UTR	ENST00000556847	ENST00000216520		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-5UTR	ENST00000556847	ENST00000555373		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
Frame-shit	ENST00000557386	ENST00000557016		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
5CDS-5UTR	ENST00000557386	ENST00000216520		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
5CDS-5UTR	ENST00000557386	ENST00000555373		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
Frame-shit	ENST00000389997	ENST00000557016		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
5CDS-5UTR	ENST00000389997	ENST00000216520		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
5CDS-5UTR	ENST00000389997	ENST00000555373		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-3CDS	ENST00000553293	ENST00000557016		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-5UTR	ENST00000553293	ENST00000216520		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
intron-5UTR	ENST00000553293	ENST00000555373		TCGA	RV	LIHC	TCGA-DD-A11A-01A	DCAF5	chr14	69619482	-	ERH	chr14	69853800	-
In-frame	ENST00000400000	ENST00000578921		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	VAPA	chr18	9937063	+	RAB31	chr18	9775275	+
5CDS-intron	ENST00000400000	ENST00000577284		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	VAPA	chr18	9937063	+	RAB31	chr18	9775275	+
In-frame	ENST00000340541	ENST00000578921		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	VAPA	chr18	9937063	+	RAB31	chr18	9775275	+
5CDS-intron	ENST00000340541	ENST00000577284		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	VAPA	chr18	9937063	+	RAB31	chr18	9775275	+
3UTR-3CDS	ENST00000584796	ENST00000578921		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	VAPA	chr18	9937063	+	RAB31	chr18	9775275	+
3UTR-intron	ENST00000584796	ENST00000577284		TCGA	RV	LIHC	TCGA-ZP-A9D0-01A	VAPA	chr18	9937063	+	RAB31	chr18	9775275	+
Frame-shit	ENST00000375458	ENST00000303735		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375458	ENST00000409149		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375458	ENST00000409058		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000375458	ENST00000409662		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000375458	ENST00000493887		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000342193	ENST00000303735		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000342193	ENST00000409149		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000342193	ENST00000409058		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
Frame-shit	ENST00000342193	ENST00000409662		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000342193	ENST00000493887		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000409184	ENST00000303735		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000409184	ENST00000409149		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000409184	ENST00000409058		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000409184	ENST00000409662		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000409184	ENST00000493887		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000392717	ENST00000303735		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000392717	ENST00000409149		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000392717	ENST00000409058		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000392717	ENST00000409662		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000392717	ENST00000493887		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000194871	ENST00000303735		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000194871	ENST00000409149		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000194871	ENST00000409058		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
In-frame	ENST00000194871	ENST00000409662		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5CDS-5UTR	ENST00000194871	ENST00000493887		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5UTR-3CDS	ENST00000491126	ENST00000303735		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5UTR-3CDS	ENST00000491126	ENST00000409149		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5UTR-3CDS	ENST00000491126	ENST00000409058		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5UTR-3CDS	ENST00000491126	ENST00000409662		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5UTR-5UTR	ENST00000491126	ENST00000493887		TCGA	RV	LIHC	TCGA-BC-A3KG-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165772483	-
5CDS-intron	ENST00000356093	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000356093	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000356093	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000356093	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000398863	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000398863	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000398863	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000398863	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000343067	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000343067	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000343067	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000343067	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000349460	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000349460	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000349460	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000349460	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373800	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373800	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373800	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373800	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000347529	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000347529	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000347529	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000347529	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373798	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373798	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373798	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373798	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373797	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373797	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373797	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000373797	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
intron-intron	ENST00000460378	ENST00000497986		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
intron-intron	ENST00000460378	ENST00000335514		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
intron-intron	ENST00000460378	ENST00000468425		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
intron-intron	ENST00000460378	ENST00000465645		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	EPB41	chr1	29391670	+	ATPIF1	chr1	28573100	+
5CDS-intron	ENST00000302068	ENST00000300134		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000302068	ENST00000538913		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000302068	ENST00000543873		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000302068	ENST00000556155		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000302068	ENST00000537215		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000302068	ENST00000454075		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509493	ENST00000300134		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509493	ENST00000538913		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509493	ENST00000543873		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509493	ENST00000556155		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509493	ENST00000537215		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000509493	ENST00000454075		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000502545	ENST00000300134		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000502545	ENST00000538913		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000502545	ENST00000543873		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000502545	ENST00000556155		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000502545	ENST00000537215		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-intron	ENST00000502545	ENST00000454075		TCGA	RV	LIHC	TCGA-BC-4073-01B	FGB	chr4	155492238	+	STAT6	chr12	57496773	-
intron-3CDS	ENST00000261596	ENST00000400569		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000261596	ENST00000356443		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000261596	ENST00000261606		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
intron-intron	ENST00000261596	ENST00000582016		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
5UTR-3CDS	ENST00000581568	ENST00000400569		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
5UTR-3CDS	ENST00000581568	ENST00000356443		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
5UTR-3CDS	ENST00000581568	ENST00000261606		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
5UTR-intron	ENST00000581568	ENST00000582016		TCGA	RV	LIHC	TCGA-PD-A5DF-01A	LPIN2	chr18	2982666	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000397063	ENST00000409150		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-intron	ENST00000397063	ENST00000492292		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
Frame-shit	ENST00000397062	ENST00000409150		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
5CDS-intron	ENST00000397062	ENST00000492292		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-3CDS	ENST00000446151	ENST00000409150		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-intron	ENST00000446151	ENST00000492292		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-3CDS	ENST00000464747	ENST00000409150		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-intron	ENST00000464747	ENST00000492292		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-3CDS	ENST00000423513	ENST00000409150		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
intron-intron	ENST00000423513	ENST00000492292		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	NFE2L2	chr2	178129260	-	TMEM194B	chr2	191390104	-
5UTR-3CDS	ENST00000517970	ENST00000360375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
5UTR-3CDS	ENST00000517970	ENST00000414626		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
intron-3CDS	ENST00000349423	ENST00000360375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
intron-3CDS	ENST00000349423	ENST00000414626		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
intron-3CDS	ENST00000341922	ENST00000360375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
intron-3CDS	ENST00000341922	ENST00000414626		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
intron-3CDS	ENST00000265428	ENST00000360375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
intron-3CDS	ENST00000265428	ENST00000414626		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
3UTR-3CDS	ENST00000523863	ENST00000360375		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
3UTR-3CDS	ENST00000523863	ENST00000414626		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	WWP1	chr8	87355159	+	LRRCC1	chr8	86053617	+
5CDS-intron	ENST00000379388	ENST00000446507		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000379388	ENST00000441198		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000379388	ENST00000304672		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000484210	ENST00000446507		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000484210	ENST00000441198		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
5CDS-intron	ENST00000484210	ENST00000304672		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000541134	ENST00000446507		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000541134	ENST00000441198		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
intron-intron	ENST00000541134	ENST00000304672		TCGA	RV	LIHC	TCGA-4R-AA8I-01A	HIVEP1	chr6	12015901	+	PTCRA	chr6	42890765	+
In-frame	ENST00000397661	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
In-frame	ENST00000397661	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
In-frame	ENST00000397661	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000397661	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000397661	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
In-frame	ENST00000592199	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
In-frame	ENST00000592199	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
In-frame	ENST00000592199	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000592199	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000592199	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000587760	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000587760	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000587760	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000587760	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000587760	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000585575	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000585575	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000585575	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000585575	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000585575	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000360105	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000360105	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000360105	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000360105	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000360105	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000588228	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000588228	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000588228	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000588228	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000588228	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000587260	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000587260	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000587260	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000587260	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000587260	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000358552	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000358552	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000358552	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000358552	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000358552	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000588680	ENST00000541222		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000588680	ENST00000316856		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000588680	ENST00000586534		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000588680	ENST00000592268		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000588680	ENST00000588826		TCGA	RV	LIHC	TCGA-BC-A10T-01A	NFIX	chr19	13106678	+	RAD23A	chr19	13063503	+
Frame-shit	ENST00000301281	ENST00000478253		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	UBXN6	chr19	4453927	-	ABHD6	chr3	58279316	+
Frame-shit	ENST00000301281	ENST00000295962		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	UBXN6	chr19	4453927	-	ABHD6	chr3	58279316	+
5CDS-intron	ENST00000301281	ENST00000480457		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	UBXN6	chr19	4453927	-	ABHD6	chr3	58279316	+
In-frame	ENST00000394765	ENST00000478253		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	UBXN6	chr19	4453927	-	ABHD6	chr3	58279316	+
Frame-shit	ENST00000394765	ENST00000295962		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	UBXN6	chr19	4453927	-	ABHD6	chr3	58279316	+
5CDS-intron	ENST00000394765	ENST00000480457		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	UBXN6	chr19	4453927	-	ABHD6	chr3	58279316	+
5CDS-intron	ENST00000263253	ENST00000541156		TCGA	RV	LIHC	TCGA-DD-A73F-01A	EP300	chr22	41551117	+	XPNPEP3	chr22	41363803	+
5CDS-intron	ENST00000263253	ENST00000357137		TCGA	RV	LIHC	TCGA-DD-A73F-01A	EP300	chr22	41551117	+	XPNPEP3	chr22	41363803	+
5CDS-3UTR	ENST00000263253	ENST00000544094		TCGA	RV	LIHC	TCGA-DD-A73F-01A	EP300	chr22	41551117	+	XPNPEP3	chr22	41363803	+
5CDS-intron	ENST00000263253	ENST00000414396		TCGA	RV	LIHC	TCGA-DD-A73F-01A	EP300	chr22	41551117	+	XPNPEP3	chr22	41363803	+
5CDS-intron	ENST00000263253	ENST00000482652		TCGA	RV	LIHC	TCGA-DD-A73F-01A	EP300	chr22	41551117	+	XPNPEP3	chr22	41363803	+
In-frame	ENST00000302475	ENST00000309007		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
In-frame	ENST00000302475	ENST00000292385		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
In-frame	ENST00000302475	ENST00000393565		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000302475	ENST00000393563		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5CDS-5UTR	ENST00000302475	ENST00000512501		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000514701	ENST00000309007		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000514701	ENST00000292385		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000514701	ENST00000393565		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5UTR-5UTR	ENST00000514701	ENST00000393563		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5UTR-5UTR	ENST00000514701	ENST00000512501		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000515367	ENST00000309007		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000515367	ENST00000292385		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000515367	ENST00000393565		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-5UTR	ENST00000515367	ENST00000393563		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-5UTR	ENST00000515367	ENST00000512501		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000408903	ENST00000309007		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000408903	ENST00000292385		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-3CDS	ENST00000408903	ENST00000393565		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-5UTR	ENST00000408903	ENST00000393563		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
intron-5UTR	ENST00000408903	ENST00000512501		TCGA	RV	LIHC	TCGA-BC-A10T-01A	MCC	chr5	112630026	-	DBN1	chr5	176887704	-
5UTR-3CDS	ENST00000396000	ENST00000262646		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000396000	ENST00000531289		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000396000	ENST00000529579		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3UTR	ENST00000396000	ENST00000530071		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000262735	ENST00000262646		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000262735	ENST00000531289		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000262735	ENST00000529579		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3UTR	ENST00000262735	ENST00000530071		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000407236	ENST00000262646		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000407236	ENST00000531289		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3CDS	ENST00000407236	ENST00000529579		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
5UTR-3UTR	ENST00000407236	ENST00000530071		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000481567	ENST00000262646		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000481567	ENST00000531289		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000481567	ENST00000529579		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000481567	ENST00000530071		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000402126	ENST00000262646		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000402126	ENST00000531289		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000402126	ENST00000529579		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000402126	ENST00000530071		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000434345	ENST00000262646		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000434345	ENST00000531289		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000434345	ENST00000529579		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000434345	ENST00000530071		TCGA	RV	LIHC	TCGA-BC-A10X-01A	PPARA	chr22	46547873	+	RAB2A	chr8	61531139	+
intron-5UTR	ENST00000240095	ENST00000361488		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-intron	ENST00000240095	ENST00000520369		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-5UTR	ENST00000359741	ENST00000361488		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-intron	ENST00000359741	ENST00000520369		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-5UTR	ENST00000381237	ENST00000361488		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-intron	ENST00000381237	ENST00000520369		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-5UTR	ENST00000289952	ENST00000361488		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
intron-intron	ENST00000289952	ENST00000520369		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SLC39A14	chr8	22237027	+	FAM110B	chr8	59058466	+
In-frame	ENST00000524892	ENST00000366558		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
In-frame	ENST00000524892	ENST00000366559		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
5CDS-intron	ENST00000524892	ENST00000484628		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
5CDS-intron	ENST00000524892	ENST00000366557		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
In-frame	ENST00000298815	ENST00000366558		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
In-frame	ENST00000298815	ENST00000366559		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
5CDS-intron	ENST00000298815	ENST00000484628		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
5CDS-intron	ENST00000298815	ENST00000366557		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
3UTR-3CDS	ENST00000534060	ENST00000366558		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
3UTR-3CDS	ENST00000534060	ENST00000366559		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
3UTR-intron	ENST00000534060	ENST00000484628		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
3UTR-intron	ENST00000534060	ENST00000366557		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	ARHGAP42	chr11	100730356	+	KMO	chr1	241749981	+
Frame-shit	ENST00000585892	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000585892	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000585892	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000314646	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000314646	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000314646	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000359692	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000359692	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000359692	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000389253	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000389253	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000389253	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000355667	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000355667	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000355667	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000408974	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000408974	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000408974	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
intron-3CDS	ENST00000591819	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
intron-3CDS	ENST00000591819	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
intron-3CDS	ENST00000591819	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000199389	ENST00000403799		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000199389	ENST00000395796		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000199389	ENST00000345378		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000199389	ENST00000437084		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
5CDS-intron	ENST00000199389	ENST00000476008		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000403799		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000395796		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000345378		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000437084		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
5CDS-intron	ENST00000536084	ENST00000476008		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000403799		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000395796		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000345378		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000437084		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-intron	ENST00000495565	ENST00000476008		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000545168	ENST00000371692		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
intron-intron	ENST00000545168	ENST00000371691		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
In-frame	ENST00000376989	ENST00000371692		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000376989	ENST00000371691		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
In-frame	ENST00000238018	ENST00000371692		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000238018	ENST00000371691		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
Frame-shit	ENST00000376986	ENST00000371692		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000376986	ENST00000371691		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
In-frame	ENST00000358399	ENST00000371692		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000358399	ENST00000371691		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
intron-3CDS	ENST00000477618	ENST00000371692		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
intron-intron	ENST00000477618	ENST00000371691		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	GDA	chr9	74764598	+	FAM69B	chr9	139612029	+
In-frame	ENST00000280285	ENST00000282469		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000280285	ENST00000509059		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000280285	ENST00000356031		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000280285	ENST00000440995		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000280285	ENST00000303129		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000382142	ENST00000282469		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000382142	ENST00000509059		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000382142	ENST00000356031		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000382142	ENST00000440995		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000382142	ENST00000303129		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000264934	ENST00000282469		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000264934	ENST00000509059		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000264934	ENST00000356031		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
In-frame	ENST00000264934	ENST00000440995		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000264934	ENST00000303129		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000510216	ENST00000282469		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000510216	ENST00000509059		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000510216	ENST00000356031		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000510216	ENST00000440995		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
intron-intron	ENST00000510216	ENST00000303129		TCGA	RV	LIHC	TCGA-CC-5264-01A	MTMR12	chr5	32268807	-	SPEF2	chr5	35628562	+
5UTR-3CDS	ENST00000355237	ENST00000405460		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
5UTR-3CDS	ENST00000355237	ENST00000425867		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
5UTR-intron	ENST00000355237	ENST00000450321		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000396442	ENST00000405460		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000396442	ENST00000425867		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-intron	ENST00000396442	ENST00000450321		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000380766	ENST00000405460		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000380766	ENST00000425867		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-intron	ENST00000380766	ENST00000450321		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000538151	ENST00000405460		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000538151	ENST00000425867		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-intron	ENST00000538151	ENST00000450321		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000542132	ENST00000405460		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000542132	ENST00000425867		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-intron	ENST00000542132	ENST00000450321		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000514370	ENST00000405460		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-3CDS	ENST00000514370	ENST00000425867		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
intron-intron	ENST00000514370	ENST00000450321		TCGA	RV	LIHC	TCGA-CC-5263-01A	OCLN	chr5	68788486	+	GPR98	chr5	90261232	+
In-frame	ENST00000355683	ENST00000509479		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
5CDS-intron	ENST00000355683	ENST00000327122		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
5CDS-intron	ENST00000355683	ENST00000398940		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
In-frame	ENST00000357479	ENST00000509479		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
5CDS-intron	ENST00000357479	ENST00000327122		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
5CDS-intron	ENST00000357479	ENST00000398940		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
intron-3CDS	ENST00000366206	ENST00000509479		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
intron-intron	ENST00000366206	ENST00000327122		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
intron-intron	ENST00000366206	ENST00000398940		TCGA	RV	LIHC	TCGA-DD-A1EJ-01A	STRN3	chr14	31495110	-	MAML3	chr4	140651821	-
3UTR-intron	ENST00000402696	ENST00000264818		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000402696	ENST00000524462		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000402696	ENST00000525621		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000402696	ENST00000529370		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000402696	ENST00000529422		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000264998	ENST00000264818		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000264998	ENST00000524462		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000264998	ENST00000525621		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000264998	ENST00000529370		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000264998	ENST00000529422		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
intron-intron	ENST00000475382	ENST00000264818		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
intron-intron	ENST00000475382	ENST00000524462		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
intron-intron	ENST00000475382	ENST00000525621		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
intron-intron	ENST00000475382	ENST00000529370		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
intron-intron	ENST00000475382	ENST00000529422		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	TF	chr3	133497635	+	TYK2	chr19	10491352	-
In-frame	ENST00000247843	ENST00000261267		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000247843	ENST00000549690		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000247843	ENST00000548839		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000548020	ENST00000261267		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000548020	ENST00000549690		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000548020	ENST00000548839		TCGA	RV	LIHC	TCGA-BC-A3KF-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000371666	ENST00000276204		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
In-frame	ENST00000371666	ENST00000276202		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000371642	ENST00000276204		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000371642	ENST00000276202		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000481868	ENST00000276204		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000481868	ENST00000276202		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000371637	ENST00000276204		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
intron-3CDS	ENST00000371637	ENST00000276202		TCGA	RV	LIHC	TCGA-NI-A4U2-01A	IL13RA1	chrX	117900939	+	DOCK11	chrX	117796649	+
In-frame	ENST00000398645	ENST00000308831		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000398645	ENST00000533360		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000398645	ENST00000532559		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
In-frame	ENST00000529006	ENST00000308831		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000529006	ENST00000533360		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
5CDS-3UTR	ENST00000529006	ENST00000532559		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
3UTR-3CDS	ENST00000526258	ENST00000308831		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
3UTR-3UTR	ENST00000526258	ENST00000533360		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
3UTR-3UTR	ENST00000526258	ENST00000532559		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
intron-3CDS	ENST00000308783	ENST00000308831		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000308783	ENST00000533360		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000308783	ENST00000532559		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
intron-3CDS	ENST00000530342	ENST00000308831		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000530342	ENST00000533360		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
intron-3UTR	ENST00000530342	ENST00000532559		TCGA	RV	LIHC	TCGA-DD-AADF-01A	KDM2A	chr11	66999431	+	RHOD	chr11	66837896	+
Frame-shit	ENST00000440909	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000440909	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000448921	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000448921	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000437397	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000437397	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000355814	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000355814	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000393087	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393087	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000393088	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000393088	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000404814	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000404814	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000449399	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000449399	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000402629	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000402629	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000555289	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555289	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A4NR-01A	SERPINA1	chr14	94843084	-	CCT5	chr5	10250033	+
5UTR-5UTR	ENST00000317683	ENST00000598155		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	FBXO46	chr19	46234107	-	SYMPK	chr19	46321404	-
5UTR-5UTR	ENST00000317683	ENST00000245934		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	FBXO46	chr19	46234107	-	SYMPK	chr19	46321404	-
Frame-shit	ENST00000258874	ENST00000267953		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
Frame-shit	ENST00000258874	ENST00000335661		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000559722	ENST00000267953		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000559722	ENST00000335661		TCGA	RV	LIHC	TCGA-DD-AAD6-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000252485	ENST00000259607		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PVRL2	chr19	45349870	+	CCL21	chr9	34709894	-
In-frame	ENST00000252485	ENST00000378792		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PVRL2	chr19	45349870	+	CCL21	chr9	34709894	-
In-frame	ENST00000252483	ENST00000259607		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PVRL2	chr19	45349870	+	CCL21	chr9	34709894	-
In-frame	ENST00000252483	ENST00000378792		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	PVRL2	chr19	45349870	+	CCL21	chr9	34709894	-
intron-3CDS	ENST00000522695	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522695	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522695	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522695	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522695	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522695	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522695	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524300	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000523558	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521210	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000355780	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519961	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000521727	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521451	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000522509	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000517542	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000524104	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000522962	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000522455		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000521695		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000521268		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000518566		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000517638		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000523850		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
5UTR-3CDS	ENST00000521419	ENST00000521376		TCGA	RV	LIHC	TCGA-EP-A12J-01A	STAU2	chr8	74659018	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000229812	ENST00000355295		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	STK38	chr6	36507849	-	TDRD7	chr9	100249454	+
Frame-shit	ENST00000229812	ENST00000422139		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	STK38	chr6	36507849	-	TDRD7	chr9	100249454	+
Frame-shit	ENST00000229812	ENST00000540902		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	STK38	chr6	36507849	-	TDRD7	chr9	100249454	+
5CDS-intron	ENST00000229812	ENST00000492428		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	STK38	chr6	36507849	-	TDRD7	chr9	100249454	+
5UTR-3CDS	ENST00000352645	ENST00000216237		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	ZC3H7B	chr22	41697776	+	L3MBTL2	chr22	41615423	+
5UTR-intron	ENST00000352645	ENST00000489136		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	ZC3H7B	chr22	41697776	+	L3MBTL2	chr22	41615423	+
intron-3CDS	ENST00000351589	ENST00000216237		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	ZC3H7B	chr22	41697776	+	L3MBTL2	chr22	41615423	+
intron-intron	ENST00000351589	ENST00000489136		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	ZC3H7B	chr22	41697776	+	L3MBTL2	chr22	41615423	+
5UTR-3CDS	ENST00000244769	ENST00000344537		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000244769	ENST00000355917		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000244769	ENST00000338950		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000244769	ENST00000462989		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000436367	ENST00000344537		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000436367	ENST00000355917		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000436367	ENST00000338950		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
5UTR-3CDS	ENST00000436367	ENST00000462989		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000467008	ENST00000344537		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000467008	ENST00000355917		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000467008	ENST00000338950		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000467008	ENST00000462989		TCGA	RV	LIHC	TCGA-HP-A5N0-01A	ATXN1	chr6	16486203	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000393958	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000393958	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
In-frame	ENST00000393960	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000393960	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
Frame-shit	ENST00000355677	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000355677	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
Frame-shit	ENST00000524491	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000524491	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000529047	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
intron-intron	ENST00000529047	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
In-frame	ENST00000393955	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
5CDS-intron	ENST00000393955	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000528224	ENST00000241052		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
intron-intron	ENST00000528224	ENST00000534710		TCGA	RV	LIHC	TCGA-DD-A4NN-01A	PC	chr11	66631245	-	CAT	chr11	34470739	+
Frame-shit	ENST00000392133	ENST00000265724		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
Frame-shit	ENST00000392133	ENST00000543898		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
5CDS-5UTR	ENST00000392133	ENST00000488737		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
Frame-shit	ENST00000392132	ENST00000265724		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
Frame-shit	ENST00000392132	ENST00000543898		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
5CDS-5UTR	ENST00000392132	ENST00000488737		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
3UTR-3CDS	ENST00000471649	ENST00000265724		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
3UTR-3CDS	ENST00000471649	ENST00000543898		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
3UTR-5UTR	ENST00000471649	ENST00000488737		TCGA	RV	LIHC	TCGA-BC-A10T-01A	XRCC5	chr2	216997110	+	ABCB1	chr7	87133765	-
intron-3CDS	ENST00000383737	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000383737	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000383737	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000383737	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
In-frame	ENST00000395734	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000395734	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000395734	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
5CDS-intron	ENST00000395734	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
In-frame	ENST00000426837	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000426837	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000426837	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
5CDS-intron	ENST00000426837	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
In-frame	ENST00000360240	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000360240	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000360240	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
5CDS-intron	ENST00000360240	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000439356	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000439356	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000439356	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000439356	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000264724	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000264724	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000264724	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000264724	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000420772	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000420772	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000420772	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000420772	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000441748	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000441748	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000441748	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000441748	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000462206	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000462206	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000462206	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000462206	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000434267	ENST00000395443		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000434267	ENST00000357496		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-3CDS	ENST00000434267	ENST00000424300		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
intron-intron	ENST00000434267	ENST00000479449		TCGA	RV	LIHC	TCGA-EP-A2KA-01A	MAP4	chr3	47956307	-	QRICH1	chr3	49068077	-
Frame-shit	ENST00000377227	ENST00000427908		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377227	ENST00000423571		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377227	ENST00000439742		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377227	ENST00000513063		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377219	ENST00000427908		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377219	ENST00000423571		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377219	ENST00000439742		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000377219	ENST00000513063		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000506128	ENST00000427908		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000506128	ENST00000423571		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000506128	ENST00000439742		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000506128	ENST00000513063		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000511320	ENST00000427908		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000511320	ENST00000423571		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000511320	ENST00000439742		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
Frame-shit	ENST00000511320	ENST00000513063		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
intron-3CDS	ENST00000503273	ENST00000427908		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
intron-3CDS	ENST00000503273	ENST00000423571		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
intron-3CDS	ENST00000503273	ENST00000439742		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
intron-3CDS	ENST00000503273	ENST00000513063		TCGA	RV	LIHC	TCGA-BC-A112-01A	UIMC1	chr5	176397743	-	MXD3	chr5	176734965	-
intron-3CDS	ENST00000406697	ENST00000349394		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
intron-3UTR	ENST00000406697	ENST00000555154		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
5UTR-3CDS	ENST00000328916	ENST00000349394		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
5UTR-3UTR	ENST00000328916	ENST00000555154		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
5UTR-3CDS	ENST00000360817	ENST00000349394		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
5UTR-3UTR	ENST00000360817	ENST00000555154		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
5UTR-3CDS	ENST00000402681	ENST00000349394		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
5UTR-3UTR	ENST00000402681	ENST00000555154		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
intron-3CDS	ENST00000495061	ENST00000349394		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
intron-3UTR	ENST00000495061	ENST00000555154		TCGA	RV	LIHC	TCGA-G3-AAUZ-01A	C1S	chr12	7168181	+	NXPH4	chr12	57618661	+
intron-3CDS	ENST00000392474	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392474	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392474	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392474	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000392474	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000392474	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000392474	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000538733	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000538733	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000538733	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000538733	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000538733	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000538733	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000538733	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000337174	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000337174	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000337174	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000337174	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000337174	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000337174	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000337174	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000347034	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000347034	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000347034	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000347034	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000347034	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000347034	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000347034	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000324774	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000324774	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000324774	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000324774	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000324774	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000324774	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000324774	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000545538	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000545538	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000545538	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000545538	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000545538	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000545538	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000545538	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000412367	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000412367	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000412367	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000412367	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000412367	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000412367	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-intron	ENST00000412367	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000404169	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000404169	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000404169	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000404169	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000404169	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000404169	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-intron	ENST00000404169	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000402834	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000402834	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000402834	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000402834	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000402834	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000402834	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-intron	ENST00000402834	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000446440	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000446440	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000446440	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000446440	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000446440	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000446440	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000446440	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392473	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392473	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392473	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-3CDS	ENST00000392473	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000392473	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-5UTR	ENST00000392473	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
intron-intron	ENST00000392473	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000535524	ENST00000441917		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000535524	ENST00000541887		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000535524	ENST00000261819		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-3CDS	ENST00000535524	ENST00000535482		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000535524	ENST00000544314		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-5UTR	ENST00000535524	ENST00000344395		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
5UTR-intron	ENST00000535524	ENST00000536366		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121758262	-
In-frame	ENST00000535572	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
5CDS-3UTR	ENST00000535572	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
In-frame	ENST00000537687	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
5CDS-3UTR	ENST00000537687	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
In-frame	ENST00000315939	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
5CDS-3UTR	ENST00000315939	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
intron-3CDS	ENST00000447667	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
intron-3UTR	ENST00000447667	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
In-frame	ENST00000530271	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
5CDS-3UTR	ENST00000530271	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
3UTR-3CDS	ENST00000540360	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
3UTR-3UTR	ENST00000540360	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
intron-3CDS	ENST00000340908	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
intron-3UTR	ENST00000340908	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
intron-3CDS	ENST00000574564	ENST00000266383		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
intron-3UTR	ENST00000574564	ENST00000544638		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	WNK1	chr12	939326	+	B4GALNT3	chr12	657397	+
Frame-shit	ENST00000585892	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000585892	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000585892	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000314646	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000314646	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000314646	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000359692	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000359692	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000359692	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000389253	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000389253	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000389253	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000355667	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000355667	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000355667	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000408974	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000408974	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000408974	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
intron-3CDS	ENST00000591819	ENST00000221452		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
intron-3CDS	ENST00000591819	ENST00000540120		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
intron-3CDS	ENST00000591819	ENST00000505236		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	DNM2	chr19	10829079	+	RELB	chr19	45537502	+
Frame-shit	ENST00000317506	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
Frame-shit	ENST00000448631	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
5UTR-3CDS	ENST00000536251	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
Frame-shit	ENST00000411657	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
Frame-shit	ENST00000602677	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
Frame-shit	ENST00000425512	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
5UTR-3CDS	ENST00000602887	ENST00000264005		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RANBP10	chr16	67771916	-	LCAT	chr16	67974381	-
5CDS-5UTR	ENST00000230036	ENST00000259698		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000230036	ENST00000538035		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000230036	ENST00000510784		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000230036	ENST00000378023		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000230036	ENST00000540914		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000230036	ENST00000473070		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000474784	ENST00000259698		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000474784	ENST00000538035		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000474784	ENST00000510784		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000474784	ENST00000378023		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5UTR-5UTR	ENST00000474784	ENST00000540914		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5UTR-intron	ENST00000474784	ENST00000473070		TCGA	RV	LIHC	TCGA-2Y-A9H9-01A	GPLD1	chr6	24486303	-	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000325110	ENST00000504880		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000325110	ENST00000396865		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000325110	ENST00000539768		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000325110	ENST00000318672		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000325110	ENST00000515629		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-5UTR	ENST00000325110	ENST00000416547		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-5UTR	ENST00000325110	ENST00000512595		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000433297	ENST00000504880		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000433297	ENST00000396865		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000433297	ENST00000539768		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000433297	ENST00000318672		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000433297	ENST00000515629		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-5UTR	ENST00000433297	ENST00000416547		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-5UTR	ENST00000433297	ENST00000512595		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	HMGCS1	chr5	43292576	-	SLC38A9	chr5	54965707	-
5CDS-intron	ENST00000242783	ENST00000418066		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000242783	ENST00000409920		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000242783	ENST00000394295		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000242783	ENST00000536030		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
intron-intron	ENST00000587429	ENST00000418066		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
intron-intron	ENST00000587429	ENST00000409920		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
intron-intron	ENST00000587429	ENST00000394295		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
intron-intron	ENST00000587429	ENST00000536030		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000342216	ENST00000418066		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000342216	ENST00000409920		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000342216	ENST00000394295		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
5CDS-intron	ENST00000342216	ENST00000536030		TCGA	RV	LIHC	TCGA-BC-4072-01B	PKN1	chr19	14574965	+	ANXA4	chr2	70015186	+
Frame-shit	ENST00000215567	ENST00000215565		TCGA	RV	LIHC	TCGA-DD-AADB-01A	TECR	chr19	14640523	+	NDUFB7	chr19	14677745	-
5UTR-3CDS	ENST00000596073	ENST00000215565		TCGA	RV	LIHC	TCGA-DD-AADB-01A	TECR	chr19	14640523	+	NDUFB7	chr19	14677745	-
5UTR-3CDS	ENST00000600083	ENST00000215565		TCGA	RV	LIHC	TCGA-DD-AADB-01A	TECR	chr19	14640523	+	NDUFB7	chr19	14677745	-
5UTR-3CDS	ENST00000436007	ENST00000215565		TCGA	RV	LIHC	TCGA-DD-AADB-01A	TECR	chr19	14640523	+	NDUFB7	chr19	14677745	-
3UTR-3CDS	ENST00000596164	ENST00000215565		TCGA	RV	LIHC	TCGA-DD-AADB-01A	TECR	chr19	14640523	+	NDUFB7	chr19	14677745	-
In-frame	ENST00000298912	ENST00000554659		TCGA	RV	LIHC	TCGA-CC-5263-01A	CLMN	chr14	95786048	-	VTI1B	chr14	68120215	-
intron-3CDS	ENST00000557215	ENST00000554659		TCGA	RV	LIHC	TCGA-CC-5263-01A	CLMN	chr14	95786048	-	VTI1B	chr14	68120215	-
intron-3CDS	ENST00000556441	ENST00000554659		TCGA	RV	LIHC	TCGA-CC-5263-01A	CLMN	chr14	95786048	-	VTI1B	chr14	68120215	-
intron-3UTR	ENST00000429054	ENST00000506888		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RNF144B	chr6	18399930	+	C6orf165	chr6	88173738	+
intron-3UTR	ENST00000429054	ENST00000507897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RNF144B	chr6	18399930	+	C6orf165	chr6	88173738	+
5CDS-3UTR	ENST00000259939	ENST00000506888		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RNF144B	chr6	18399930	+	C6orf165	chr6	88173738	+
5CDS-3UTR	ENST00000259939	ENST00000507897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RNF144B	chr6	18399930	+	C6orf165	chr6	88173738	+
3UTR-3UTR	ENST00000486622	ENST00000506888		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RNF144B	chr6	18399930	+	C6orf165	chr6	88173738	+
3UTR-3UTR	ENST00000486622	ENST00000507897		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	RNF144B	chr6	18399930	+	C6orf165	chr6	88173738	+
Frame-shit	ENST00000515359	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000515359	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000515359	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5CDS-intron	ENST00000515359	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000308775	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000308775	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000308775	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5CDS-intron	ENST00000308775	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000541308	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000541308	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000541308	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5CDS-intron	ENST00000541308	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000539901	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000539901	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000539901	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5CDS-intron	ENST00000539901	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000545947	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000545947	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000545947	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5CDS-intron	ENST00000545947	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000538711	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000538711	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
Frame-shit	ENST00000538711	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5CDS-intron	ENST00000538711	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
3UTR-3CDS	ENST00000479935	ENST00000265537		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
3UTR-3CDS	ENST00000479935	ENST00000415258		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
3UTR-3CDS	ENST00000479935	ENST00000414984		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
3UTR-intron	ENST00000479935	ENST00000467936		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	DAG1	chr3	49548252	+	LARS2	chr3	45588843	+
5UTR-3CDS	ENST00000325722	ENST00000258930		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
5UTR-5UTR	ENST00000325722	ENST00000539011		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
5UTR-intron	ENST00000325722	ENST00000557846		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
5UTR-5UTR	ENST00000325722	ENST00000560618		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-3CDS	ENST00000373266	ENST00000258930		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-5UTR	ENST00000373266	ENST00000539011		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-intron	ENST00000373266	ENST00000557846		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-5UTR	ENST00000373266	ENST00000560618		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-3CDS	ENST00000485551	ENST00000258930		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-5UTR	ENST00000485551	ENST00000539011		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-intron	ENST00000485551	ENST00000557846		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
intron-5UTR	ENST00000485551	ENST00000560618		TCGA	RV	LIHC	TCGA-BW-A5NO-01A	KIAA0319L	chr1	36022808	-	CIB2	chr15	78403618	-
In-frame	ENST00000375749	ENST00000534862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000375749	ENST00000538448		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000375749	ENST00000375862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
Frame-shit	ENST00000375749	ENST00000520553		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000375749	ENST00000518730		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
Frame-shit	ENST00000375749	ENST00000375852		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3CDS	ENST00000375730	ENST00000534862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3CDS	ENST00000375730	ENST00000538448		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3CDS	ENST00000375730	ENST00000375862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3CDS	ENST00000375730	ENST00000520553		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3CDS	ENST00000375730	ENST00000518730		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3CDS	ENST00000375730	ENST00000375852		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000539210	ENST00000534862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000539210	ENST00000538448		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000539210	ENST00000375862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
Frame-shit	ENST00000539210	ENST00000520553		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
In-frame	ENST00000539210	ENST00000518730		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
Frame-shit	ENST00000539210	ENST00000375852		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
3UTR-3CDS	ENST00000486717	ENST00000534862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
3UTR-3CDS	ENST00000486717	ENST00000538448		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
3UTR-3CDS	ENST00000486717	ENST00000375862		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
3UTR-3CDS	ENST00000486717	ENST00000520553		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
3UTR-3CDS	ENST00000486717	ENST00000518730		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
3UTR-3CDS	ENST00000486717	ENST00000375852		TCGA	RV	LIHC	TCGA-G3-A25X-01A	POFUT1	chr20	30818864	+	HCK	chr20	30689120	+
intron-3UTR	ENST00000456845	ENST00000343295		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000456845	ENST00000502986		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000456845	ENST00000389060		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000412303	ENST00000343295		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000412303	ENST00000502986		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000412303	ENST00000389060		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5CDS-3UTR	ENST00000456397	ENST00000343295		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5CDS-3UTR	ENST00000456397	ENST00000502986		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5CDS-3UTR	ENST00000456397	ENST00000389060		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5UTR-3UTR	ENST00000397070	ENST00000343295		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5UTR-3UTR	ENST00000397070	ENST00000502986		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5UTR-3UTR	ENST00000397070	ENST00000389060		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000522434	ENST00000343295		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000522434	ENST00000502986		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
intron-3UTR	ENST00000522434	ENST00000389060		TCGA	RV	LIHC	TCGA-CC-A9FU-01A	TM2D2	chr8	38853732	-	IDO2	chr8	39871084	+
5UTR-3CDS	ENST00000537343	ENST00000356140		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5UTR-5UTR	ENST00000537343	ENST00000283054		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5UTR-5UTR	ENST00000537343	ENST00000392928		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
In-frame	ENST00000295238	ENST00000356140		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5CDS-5UTR	ENST00000295238	ENST00000283054		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5CDS-5UTR	ENST00000295238	ENST00000392928		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
In-frame	ENST00000264157	ENST00000356140		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5CDS-5UTR	ENST00000264157	ENST00000283054		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5CDS-5UTR	ENST00000264157	ENST00000392928		TCGA	RV	LIHC	TCGA-BC-A10R-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135602803	+
5UTR-3CDS	ENST00000284000	ENST00000170564		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CEBPG	chr19	33864801	+	GPATCH1	chr19	33617494	+
intron-3CDS	ENST00000585933	ENST00000170564		TCGA	RV	LIHC	TCGA-DD-A73F-01A	CEBPG	chr19	33864801	+	GPATCH1	chr19	33617494	+
Frame-shit	ENST00000199389	ENST00000403799		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000199389	ENST00000395796		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000199389	ENST00000345378		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000199389	ENST00000437084		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
5CDS-intron	ENST00000199389	ENST00000476008		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000403799		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000395796		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000345378		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000536084	ENST00000437084		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
5CDS-intron	ENST00000536084	ENST00000476008		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000403799		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000395796		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000345378		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-3CDS	ENST00000495565	ENST00000437084		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
intron-intron	ENST00000495565	ENST00000476008		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	EIF2AK1	chr7	6094177	-	GCK	chr7	44189663	-
Frame-shit	ENST00000328965	ENST00000227665		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116661783	-
Frame-shit	ENST00000328965	ENST00000542499		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116661783	-
5UTR-3CDS	ENST00000531220	ENST00000227665		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116661783	-
5UTR-3CDS	ENST00000531220	ENST00000542499		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116661783	-
intron-3CDS	ENST00000534735	ENST00000227665		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116661783	-
intron-3CDS	ENST00000534735	ENST00000542499		TCGA	RV	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116661783	-
5CDS-intron	ENST00000252486	ENST00000371917		TCGA	RV	LIHC	TCGA-G3-A25U-01A	APOE	chr19	45412650	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000252486	ENST00000493140		TCGA	RV	LIHC	TCGA-G3-A25U-01A	APOE	chr19	45412650	+	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000306749	ENST00000392347		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
Frame-shit	ENST00000306749	ENST00000389641		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000306749	ENST00000392346		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000306749	ENST00000327026		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000306749	ENST00000392343		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000579758	ENST00000392347		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000579758	ENST00000389641		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
intron-intron	ENST00000579758	ENST00000392346		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
intron-intron	ENST00000579758	ENST00000327026		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
intron-intron	ENST00000579758	ENST00000392343		TCGA	RV	LIHC	TCGA-FV-A2QR-01A	FASN	chr17	80042911	-	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000355366	ENST00000340533		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000355366	ENST00000494131		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000355366	ENST00000397914		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-5UTR	ENST00000355366	ENST00000299438		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-intron	ENST00000355366	ENST00000579064		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000358531	ENST00000340533		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000358531	ENST00000494131		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000358531	ENST00000397914		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
5CDS-5UTR	ENST00000358531	ENST00000299438		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
5CDS-intron	ENST00000358531	ENST00000579064		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000487035	ENST00000340533		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000487035	ENST00000494131		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000487035	ENST00000397914		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-5UTR	ENST00000487035	ENST00000299438		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-intron	ENST00000487035	ENST00000579064		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000371027	ENST00000340533		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000371027	ENST00000494131		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-3CDS	ENST00000371027	ENST00000397914		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-5UTR	ENST00000371027	ENST00000299438		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
intron-intron	ENST00000371027	ENST00000579064		TCGA	RV	LIHC	TCGA-DD-A115-01A	ARHGAP19	chr10	99052329	-	CYB5A	chr18	71930712	-
In-frame	ENST00000351193	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000351193	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000351193	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000351193	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000351193	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000351193	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000472947	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000472947	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000472947	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000472947	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000472947	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000472947	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000460469	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000460469	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
In-frame	ENST00000460469	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000460469	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000460469	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5CDS-intron	ENST00000460469	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-3CDS	ENST00000478160	ENST00000450966		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-3CDS	ENST00000478160	ENST00000251722		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-3CDS	ENST00000478160	ENST00000427112		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-intron	ENST00000478160	ENST00000496298		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-intron	ENST00000478160	ENST00000409945		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
3UTR-intron	ENST00000478160	ENST00000443711		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	NMD3	chr3	160953000	+	USP40	chr2	234407258	-
5UTR-3CDS	ENST00000378823	ENST00000378953		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
5UTR-3CDS	ENST00000378823	ENST00000337752		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
5UTR-3CDS	ENST00000378823	ENST00000378947		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
5UTR-3CDS	ENST00000378823	ENST00000407797		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
5UTR-intron	ENST00000378823	ENST00000464024		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
In-frame	ENST00000265335	ENST00000378953		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
In-frame	ENST00000265335	ENST00000337752		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
In-frame	ENST00000265335	ENST00000378947		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
In-frame	ENST00000265335	ENST00000407797		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
5CDS-intron	ENST00000265335	ENST00000464024		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000487596	ENST00000378953		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000487596	ENST00000337752		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000487596	ENST00000378947		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000487596	ENST00000407797		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
intron-intron	ENST00000487596	ENST00000464024		TCGA	RV	LIHC	TCGA-BC-A10T-01A	RAD50	chr5	131895059	+	C5orf56	chr5	131785342	+
Frame-shit	ENST00000215727	ENST00000215957		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	SERPIND1	chr22	21140436	+	MICALL1	chr22	38333087	+
5CDS-3UTR	ENST00000215727	ENST00000402631		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	SERPIND1	chr22	21140436	+	MICALL1	chr22	38333087	+
Frame-shit	ENST00000406799	ENST00000215957		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	SERPIND1	chr22	21140436	+	MICALL1	chr22	38333087	+
5CDS-3UTR	ENST00000406799	ENST00000402631		TCGA	RV	LIHC	TCGA-2Y-A9HA-01A	SERPIND1	chr22	21140436	+	MICALL1	chr22	38333087	+
Frame-shit	ENST00000252486	ENST00000280326		TCGA	RV	LIHC	TCGA-DD-A1EI-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000503026		TCGA	RV	LIHC	TCGA-DD-A1EI-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000515390		TCGA	RV	LIHC	TCGA-DD-A1EI-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000515676		TCGA	RV	LIHC	TCGA-DD-A1EI-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252486	ENST00000506600		TCGA	RV	LIHC	TCGA-DD-A1EI-01A	APOE	chr19	45412650	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000263377	ENST00000397410		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000263377	ENST00000595465		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-intron	ENST00000263377	ENST00000595879		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000371835	ENST00000397410		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000371835	ENST00000595465		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-intron	ENST00000371835	ENST00000595879		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
5UTR-3CDS	ENST00000360016	ENST00000397410		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
5UTR-3CDS	ENST00000360016	ENST00000595465		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
5UTR-intron	ENST00000360016	ENST00000595879		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000602230	ENST00000397410		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000602230	ENST00000595465		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
intron-intron	ENST00000602230	ENST00000595879		TCGA	RV	LIHC	TCGA-BC-A10R-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15491423	-
In-frame	ENST00000225724	ENST00000225719		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000225724	ENST00000543464		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
5CDS-intron	ENST00000225724	ENST00000584051		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000451249	ENST00000225719		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000451249	ENST00000543464		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
5CDS-intron	ENST00000451249	ENST00000584051		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000467337	ENST00000225719		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000467337	ENST00000543464		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
5CDS-intron	ENST00000467337	ENST00000584051		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000581721	ENST00000225719		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
In-frame	ENST00000581721	ENST00000543464		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
5CDS-intron	ENST00000581721	ENST00000584051		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
intron-3CDS	ENST00000579905	ENST00000225719		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
intron-3CDS	ENST00000579905	ENST00000543464		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
intron-intron	ENST00000579905	ENST00000584051		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	GOSR1	chr17	28811788	+	CPD	chr17	28788895	+
Frame-shit	ENST00000264896	ENST00000216121		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	SCARB2	chr4	77134580	-	NIPSNAP1	chr22	29957851	-
5CDS-intron	ENST00000264896	ENST00000494966		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	SCARB2	chr4	77134580	-	NIPSNAP1	chr22	29957851	-
Frame-shit	ENST00000452464	ENST00000216121		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	SCARB2	chr4	77134580	-	NIPSNAP1	chr22	29957851	-
5CDS-intron	ENST00000452464	ENST00000494966		TCGA	RV	LIHC	TCGA-ED-A7XO-01A	SCARB2	chr4	77134580	-	NIPSNAP1	chr22	29957851	-
5CDS-intron	ENST00000404648	ENST00000513761		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000404648	ENST00000347613		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000404648	ENST00000360642		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000404648	ENST00000504131		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000404648	ENST00000506924		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405164	ENST00000513761		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405164	ENST00000347613		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405164	ENST00000360642		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405164	ENST00000504131		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000405164	ENST00000506924		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000336098	ENST00000513761		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000336098	ENST00000347613		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000336098	ENST00000360642		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000336098	ENST00000504131		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000336098	ENST00000506924		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000407946	ENST00000513761		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000407946	ENST00000347613		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000407946	ENST00000360642		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000407946	ENST00000504131		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000407946	ENST00000506924		TCGA	RV	LIHC	TCGA-DD-AADQ-01A	FGG	chr4	155525286	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000411641	ENST00000300134		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000411641	ENST00000538913		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000411641	ENST00000543873		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000411641	ENST00000556155		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000411641	ENST00000537215		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000411641	ENST00000454075		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
intron-intron	ENST00000273784	ENST00000300134		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
intron-intron	ENST00000273784	ENST00000538913		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
intron-intron	ENST00000273784	ENST00000543873		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
intron-intron	ENST00000273784	ENST00000556155		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
intron-intron	ENST00000273784	ENST00000537215		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
intron-intron	ENST00000273784	ENST00000454075		TCGA	RV	LIHC	TCGA-EP-A2KB-01A	AHSG	chr3	186339107	+	STAT6	chr12	57496773	-
3UTR-3UTR	ENST00000295897	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-3UTR	ENST00000295897	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000295897	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000415165	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000415165	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000415165	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000503124	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000503124	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000503124	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000509063	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000509063	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000509063	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000401494	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000401494	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000401494	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000505649	ENST00000318789		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000505649	ENST00000475937		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000493089		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000484350		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000318779		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000491238		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000498215		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000468577		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000505649	ENST00000472382		TCGA	RV	LIHC	TCGA-BC-4072-01B	ALB	chr4	74286971	+	FOXP1	chr3	71007472	-
Frame-shit	ENST00000495893	ENST00000231706		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000495893	ENST00000466168		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000494943	ENST00000231706		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000494943	ENST00000466168		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000467570	ENST00000231706		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000467570	ENST00000466168		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000474275	ENST00000231706		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000474275	ENST00000466168		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000497658	ENST00000231706		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000497658	ENST00000466168		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000481639	ENST00000231706		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000481639	ENST00000466168		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	PHC3	chr3	169896561	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000540367	ENST00000300060		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000540367	ENST00000558177		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-3CDS	ENST00000376618	ENST00000300060		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-intron	ENST00000376618	ENST00000558177		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-3CDS	ENST00000265641	ENST00000300060		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
5UTR-intron	ENST00000265641	ENST00000558177		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-3CDS	ENST00000539743	ENST00000300060		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000539743	ENST00000558177		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-3CDS	ENST00000537756	ENST00000300060		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000537756	ENST00000558177		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-3CDS	ENST00000538994	ENST00000300060		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
intron-intron	ENST00000538994	ENST00000558177		TCGA	RV	LIHC	TCGA-DD-A115-01A	CPT1A	chr11	68609243	-	ANPEP	chr15	90328732	-
Frame-shit	ENST00000450793	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000450793	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000450793	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000538141	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000538141	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000538141	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000380180	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000380180	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000380180	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000318007	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000318007	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000318007	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000437932	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000437932	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000437932	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000317968	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000317968	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000317968	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000542407	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000542407	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000542407	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000508216	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000508216	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000508216	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000514743	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000514743	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
Frame-shit	ENST00000514743	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000380176	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000380176	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000380176	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000359265	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000359265	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000359265	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000512274	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000512274	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000512274	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000504489	ENST00000457823		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000504489	ENST00000354268		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
intron-3CDS	ENST00000504489	ENST00000509418		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	PDLIM5	chr4	95497185	+	SMARCAD1	chr4	95210624	+
3UTR-3CDS	ENST00000531709	ENST00000377897		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000531709	ENST00000294179		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000531709	ENST00000394690		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000531709	ENST00000541317		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
Frame-shit	ENST00000294172	ENST00000377897		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
Frame-shit	ENST00000294172	ENST00000294179		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
Frame-shit	ENST00000294172	ENST00000394690		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
Frame-shit	ENST00000294172	ENST00000541317		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
In-frame	ENST00000532297	ENST00000377897		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
Frame-shit	ENST00000532297	ENST00000294179		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
In-frame	ENST00000532297	ENST00000394690		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
In-frame	ENST00000532297	ENST00000541317		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000533048	ENST00000377897		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000533048	ENST00000294179		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000533048	ENST00000394690		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000533048	ENST00000541317		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000377897		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000294179		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000394690		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000541317		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000377897		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000294179		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000394690		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000541317		TCGA	RV	LIHC	TCGA-DD-A3A1-01A	NXF1	chr11	62566011	-	STX5	chr11	62575100	-
3UTR-intron	ENST00000331595	ENST00000513761		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000347613		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000360642		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000504131		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000506924		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000513761		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000347613		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000360642		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000504131		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000506924		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
intron-3CDS	ENST00000492220	ENST00000369111		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	RPRD2	chr1	150337395	+	CA14	chr1	150236993	+
In-frame	ENST00000401000	ENST00000369111		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	RPRD2	chr1	150337395	+	CA14	chr1	150236993	+
In-frame	ENST00000539519	ENST00000369111		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	RPRD2	chr1	150337395	+	CA14	chr1	150236993	+
In-frame	ENST00000369067	ENST00000369111		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	RPRD2	chr1	150337395	+	CA14	chr1	150236993	+
In-frame	ENST00000369068	ENST00000369111		TCGA	RV	LIHC	TCGA-G3-A6UC-01A	RPRD2	chr1	150337395	+	CA14	chr1	150236993	+
5CDS-5UTR	ENST00000406310	ENST00000538767		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-5UTR	ENST00000406310	ENST00000422670		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000406310	ENST00000539651		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000406310	ENST00000394525		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000406310	ENST00000539216		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-5UTR	ENST00000000442	ENST00000538767		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-5UTR	ENST00000000442	ENST00000422670		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000000442	ENST00000539651		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000000442	ENST00000394525		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000000442	ENST00000539216		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-5UTR	ENST00000405666	ENST00000538767		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-5UTR	ENST00000405666	ENST00000422670		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000405666	ENST00000539651		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000405666	ENST00000394525		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
5CDS-3UTR	ENST00000405666	ENST00000539216		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	ESRRA	chr11	64074976	+	KCNK4	chr11	64064350	+
Frame-shit	ENST00000313949	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000371098	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371075	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371100	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000371099	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371102	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000464624	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000306120	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371095	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000371085	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000354359	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000265620	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000306090	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000371081	ENST00000421745		TCGA	RV	LIHC	TCGA-CC-A5UD-01A	GNAS	chr20	57486247	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000393958	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000393958	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000393958	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000393958	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
In-frame	ENST00000393960	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
In-frame	ENST00000393960	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000393960	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000393960	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000355677	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000355677	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000355677	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000355677	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000524491	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000524491	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000524491	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000524491	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000529047	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000529047	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000529047	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000529047	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
In-frame	ENST00000393955	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
In-frame	ENST00000393955	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000393955	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000393955	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000528224	ENST00000252699		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000528224	ENST00000424234		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000528224	ENST00000390009		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000528224	ENST00000497637		TCGA	RV	LIHC	TCGA-BC-A10T-01A	PC	chr11	66631245	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000300584	ENST00000258930		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
5CDS-5UTR	ENST00000300584	ENST00000539011		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
5CDS-intron	ENST00000300584	ENST00000557846		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
5CDS-5UTR	ENST00000300584	ENST00000560618		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
Frame-shit	ENST00000409931	ENST00000258930		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
5CDS-5UTR	ENST00000409931	ENST00000539011		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
5CDS-intron	ENST00000409931	ENST00000557846		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
5CDS-5UTR	ENST00000409931	ENST00000560618		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
intron-3CDS	ENST00000492078	ENST00000258930		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
intron-5UTR	ENST00000492078	ENST00000539011		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
intron-intron	ENST00000492078	ENST00000557846		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
intron-5UTR	ENST00000492078	ENST00000560618		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	TBC1D2B	chr15	78346376	-	CIB2	chr15	78403618	-
In-frame	ENST00000455140	ENST00000269881		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000455140	ENST00000602234		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000248070	ENST00000269881		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000248070	ENST00000602234		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000535753	ENST00000269881		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000535753	ENST00000602234		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000594975	ENST00000269881		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000594975	ENST00000602234		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
intron-3CDS	ENST00000602009	ENST00000269881		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
intron-3CDS	ENST00000602009	ENST00000602234		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000597937	ENST00000269881		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
In-frame	ENST00000597937	ENST00000602234		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	EPS15L1	chr19	16582724	-	CALR3	chr19	16594926	-
Frame-shit	ENST00000431067	ENST00000284727		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	ORM2	chr9	117095532	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000431067	ENST00000409194		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	ORM2	chr9	117095532	+	ATP5G3	chr2	176049335	-
5CDS-intron	ENST00000431067	ENST00000392541		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	ORM2	chr9	117095532	+	ATP5G3	chr2	176049335	-
intron-3CDS	ENST00000412657	ENST00000284727		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	ORM2	chr9	117095532	+	ATP5G3	chr2	176049335	-
intron-intron	ENST00000412657	ENST00000409194		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	ORM2	chr9	117095532	+	ATP5G3	chr2	176049335	-
intron-intron	ENST00000412657	ENST00000392541		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	ORM2	chr9	117095532	+	ATP5G3	chr2	176049335	-
In-frame	ENST00000338754	ENST00000215939		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TPST2	chr22	26932254	-	CRYBB1	chr22	26997985	-
Frame-shit	ENST00000398110	ENST00000215939		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TPST2	chr22	26932254	-	CRYBB1	chr22	26997985	-
Frame-shit	ENST00000403880	ENST00000215939		TCGA	RV	LIHC	TCGA-ZS-A9CF-02A	TPST2	chr22	26932254	-	CRYBB1	chr22	26997985	-
intron-3CDS	ENST00000341846	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000341846	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000341846	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000341846	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000341846	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000524816	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000524816	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000524816	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000524816	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000524816	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000541857	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000541857	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000541857	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000541857	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000541857	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000525887	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000525887	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000525887	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000525887	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000525887	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000528870	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000528870	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000528870	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000528870	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000528870	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000529044	ENST00000356341		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000529044	ENST00000530617		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000529044	ENST00000278568		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-intron	ENST00000529044	ENST00000528203		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000529044	ENST00000525542		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055918	-	PAK1	chr11	77034405	-
5CDS-intron	ENST00000266546	ENST00000406697		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-5UTR	ENST00000266546	ENST00000328916		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-intron	ENST00000266546	ENST00000360817		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-5UTR	ENST00000266546	ENST00000402681		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-intron	ENST00000266546	ENST00000495061		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-intron	ENST00000537408	ENST00000406697		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-5UTR	ENST00000537408	ENST00000328916		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-intron	ENST00000537408	ENST00000360817		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-5UTR	ENST00000537408	ENST00000402681		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
5CDS-intron	ENST00000537408	ENST00000495061		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
intron-intron	ENST00000331148	ENST00000406697		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
intron-5UTR	ENST00000331148	ENST00000328916		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
intron-intron	ENST00000331148	ENST00000360817		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
intron-5UTR	ENST00000331148	ENST00000402681		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
intron-intron	ENST00000331148	ENST00000495061		TCGA	RV	LIHC	TCGA-ZP-A9CZ-01A	CLSTN3	chr12	7288987	+	C1S	chr12	7169056	+
In-frame	ENST00000262013	ENST00000338694		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000262013	ENST00000535086		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000505279	ENST00000338694		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000505279	ENST00000535086		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000357122	ENST00000338694		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000357122	ENST00000535086		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
intron-3CDS	ENST00000509724	ENST00000338694		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
intron-3CDS	ENST00000509724	ENST00000535086		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000510283	ENST00000338694		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
In-frame	ENST00000510283	ENST00000535086		TCGA	RV	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059885	-	TEKT1	chr17	6704262	-
intron-3CDS	ENST00000556679	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556679	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556679	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556679	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556679	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000456570	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000456570	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000456570	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000456570	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000456570	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000477310	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000477310	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000477310	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000477310	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000477310	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
In-frame	ENST00000425368	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000425368	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000425368	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000425368	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000425368	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000497841	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000497841	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000497841	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000497841	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000497841	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000417261	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000417261	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000417261	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000417261	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000417261	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000427888	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000427888	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000427888	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000427888	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000427888	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000459734	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000459734	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000459734	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000459734	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000459734	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000455591	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455591	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455591	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455591	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455591	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000433503	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000433503	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000433503	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000433503	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000433503	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000474621	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000474621	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000474621	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000474621	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000474621	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000424727	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424727	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424727	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424727	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424727	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000436692	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436692	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436692	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436692	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436692	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000473139	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000473139	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000473139	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000473139	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000473139	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000399981	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000399981	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000399981	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000399981	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000399981	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000419920	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419920	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419920	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419920	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419920	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000465211	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000465211	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000465211	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000465211	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000465211	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000375455	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000375455	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000375455	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000375455	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000375455	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000489605	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000489605	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000489605	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000489605	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000489605	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000426239	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000426239	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000426239	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000426239	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000426239	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000419411	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419411	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419411	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419411	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000419411	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000460958	ENST00000280326		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000460958	ENST00000503026		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000460958	ENST00000515390		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000460958	ENST00000515676		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
intron-intron	ENST00000460958	ENST00000506600		TCGA	RV	LIHC	TCGA-EP-A3JL-01A	CFB	chr6	31919861	+	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000216181	ENST00000216185		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5UTR-3CDS	ENST00000216181	ENST00000416967		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5UTR-5UTR	ENST00000216181	ENST00000487725		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
5UTR-5UTR	ENST00000216181	ENST00000403313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000475726	ENST00000216185		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000475726	ENST00000416967		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000475726	ENST00000487725		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000475726	ENST00000403313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000401701	ENST00000216185		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000401701	ENST00000416967		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000401701	ENST00000487725		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000401701	ENST00000403313		TCGA	RV	LIHC	TCGA-BC-A10R-01A	MYH9	chr22	36783852	-	TXN2	chr22	36863964	-
In-frame	ENST00000369061	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369061	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369061	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000357555	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000357555	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000357555	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000358487	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000358487	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000358487	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000356226	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000356226	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000356226	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000369060	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369060	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369060	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000369059	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369059	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369059	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
In-frame	ENST00000346997	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000346997	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000346997	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000457416	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000457416	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000457416	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000351936	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000351936	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000351936	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000360144	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000360144	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000360144	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
In-frame	ENST00000369056	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369056	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000369056	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-3CDS	ENST00000490349	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000490349	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000490349	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-3CDS	ENST00000359354	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000359354	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
intron-intron	ENST00000359354	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000478859	ENST00000373886		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000478859	ENST00000263103		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
5CDS-intron	ENST00000478859	ENST00000476684		TCGA	RV	LIHC	TCGA-ED-A7PX-01A	FGFR2	chr10	123243212	-	BICC1	chr10	60461834	+
Frame-shit	ENST00000360971	ENST00000231656		TCGA	RV	LIHC	TCGA-RC-A6M5-01A	ENPP1	chr6	132181646	+	CDX1	chr5	149562331	+
intron-3CDS	ENST00000392474	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000392474	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000392474	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000538733	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000538733	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000538733	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000337174	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000337174	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000337174	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000347034	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000347034	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000347034	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000324774	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000324774	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000324774	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000545538	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000545538	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000545538	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000412367	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000412367	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-intron	ENST00000412367	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000404169	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000404169	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-intron	ENST00000404169	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000402834	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000402834	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-intron	ENST00000402834	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000446440	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000446440	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000446440	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000392473	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-3CDS	ENST00000392473	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
intron-intron	ENST00000392473	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000535524	ENST00000289004		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-3CDS	ENST00000535524	ENST00000543163		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
5UTR-intron	ENST00000535524	ENST00000543869		TCGA	RV	LIHC	TCGA-FV-A495-01A	CAMKK2	chr12	121734441	-	HPD	chr12	122277954	-
Frame-shit	ENST00000258874	ENST00000267953		TCGA	RV	LIHC	TCGA-DD-A73G-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
Frame-shit	ENST00000258874	ENST00000335661		TCGA	RV	LIHC	TCGA-DD-A73G-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000559722	ENST00000267953		TCGA	RV	LIHC	TCGA-DD-A73G-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
In-frame	ENST00000559722	ENST00000335661		TCGA	RV	LIHC	TCGA-DD-A73G-01A	MTHFS	chr15	80181435	-	BCL2A1	chr15	80253516	-
5CDS-5UTR	ENST00000480945	ENST00000367078		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	DDI2	chr1	15944303	+	C4BPB	chr1	207262827	+
5CDS-5UTR	ENST00000480945	ENST00000243611		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	DDI2	chr1	15944303	+	C4BPB	chr1	207262827	+
5CDS-5UTR	ENST00000480945	ENST00000367076		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	DDI2	chr1	15944303	+	C4BPB	chr1	207262827	+
5CDS-5UTR	ENST00000480945	ENST00000391923		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	DDI2	chr1	15944303	+	C4BPB	chr1	207262827	+
5CDS-intron	ENST00000480945	ENST00000451804		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	DDI2	chr1	15944303	+	C4BPB	chr1	207262827	+
5CDS-intron	ENST00000480945	ENST00000470767		TCGA	RV	LIHC	TCGA-G3-A7M7-01A	DDI2	chr1	15944303	+	C4BPB	chr1	207262827	+
intron-3CDS	ENST00000342228	ENST00000369717		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000342228	ENST00000369716		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000342228	ENST00000241356		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000342228	ENST00000486342		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000520262	ENST00000369717		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000520262	ENST00000369716		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000520262	ENST00000241356		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000520262	ENST00000486342		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000520179	ENST00000369717		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000520179	ENST00000369716		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000520179	ENST00000241356		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000520179	ENST00000486342		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000523340	ENST00000369717		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-3CDS	ENST00000523340	ENST00000369716		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000523340	ENST00000241356		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
intron-intron	ENST00000523340	ENST00000486342		TCGA	RV	LIHC	TCGA-DD-AAVZ-01A	SLC20A2	chr8	42396681	-	ADORA3	chr1	112031489	-
In-frame	ENST00000345617	ENST00000402136		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
In-frame	ENST00000345617	ENST00000407315		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
In-frame	ENST00000345617	ENST00000402545		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
5CDS-intron	ENST00000345617	ENST00000497486		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000543185	ENST00000402136		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000543185	ENST00000407315		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000543185	ENST00000402545		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-intron	ENST00000543185	ENST00000497486		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000541256	ENST00000402136		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000541256	ENST00000407315		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000541256	ENST00000402545		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-intron	ENST00000541256	ENST00000497486		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000553145	ENST00000402136		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000553145	ENST00000407315		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000553145	ENST00000402545		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
intron-intron	ENST00000553145	ENST00000497486		TCGA	RV	LIHC	TCGA-CC-A3MA-01A	HDAC4	chr2	240274373	-	THAP4	chr2	242545888	-
5CDS-5UTR	ENST00000159111	ENST00000594268		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000159111	ENST00000221498		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000381759	ENST00000594268		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000381759	ENST00000221498		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000536461	ENST00000594268		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000536461	ENST00000221498		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
3UTR-5UTR	ENST00000592175	ENST00000594268		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
3UTR-5UTR	ENST00000592175	ENST00000221498		TCGA	RV	LIHC	TCGA-KR-A7K8-01A	KDM4B	chr19	5047680	+	DKKL1	chr19	49877974	+
Frame-shit	ENST00000370206	ENST00000370205		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000370206	ENST00000495856		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
Frame-shit	ENST00000538964	ENST00000370205		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000538964	ENST00000495856		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
Frame-shit	ENST00000394202	ENST00000370205		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
5CDS-intron	ENST00000394202	ENST00000495856		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-3CDS	ENST00000545882	ENST00000370205		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-intron	ENST00000545882	ENST00000495856		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-3CDS	ENST00000487539	ENST00000370205		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
intron-intron	ENST00000487539	ENST00000495856		TCGA	RV	LIHC	TCGA-CC-5263-01A	CNN3	chr1	95392394	-	ALG14	chr1	95448862	-
In-frame	ENST00000358290	ENST00000251566		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
5CDS-5UTR	ENST00000358290	ENST00000420231		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
5CDS-intron	ENST00000358290	ENST00000547910		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
intron-3CDS	ENST00000507518	ENST00000251566		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
intron-5UTR	ENST00000507518	ENST00000420231		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
intron-intron	ENST00000507518	ENST00000547910		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
In-frame	ENST00000507286	ENST00000251566		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
5CDS-5UTR	ENST00000507286	ENST00000420231		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
5CDS-intron	ENST00000507286	ENST00000547910		TCGA	RV	LIHC	TCGA-BD-A2L6-01A	HSD17B11	chr4	88312013	-	UGT2A3	chr4	69798477	-
3UTR-3CDS	ENST00000459775	ENST00000432071		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
3UTR-3CDS	ENST00000459775	ENST00000263864		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
3UTR-3CDS	ENST00000459775	ENST00000409760		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000450066	ENST00000432071		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
In-frame	ENST00000450066	ENST00000263864		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000450066	ENST00000409760		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000409025	ENST00000432071		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
In-frame	ENST00000409025	ENST00000263864		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000409025	ENST00000409760		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000409470	ENST00000432071		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
In-frame	ENST00000409470	ENST00000263864		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000409470	ENST00000409760		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000323701	ENST00000432071		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
In-frame	ENST00000323701	ENST00000263864		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000323701	ENST00000409760		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000409766	ENST00000432071		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
In-frame	ENST00000409766	ENST00000263864		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
Frame-shit	ENST00000409766	ENST00000409760		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	USP39	chr2	85852814	+	VAMP8	chr2	85808699	+
In-frame	ENST00000273951	ENST00000379802		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
In-frame	ENST00000273951	ENST00000418664		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
In-frame	ENST00000504199	ENST00000379802		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
In-frame	ENST00000504199	ENST00000418664		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000513476	ENST00000379802		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000513476	ENST00000418664		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000503472	ENST00000379802		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000503472	ENST00000418664		TCGA	RV	LIHC	TCGA-DD-A3A8-01A	GC	chr4	72607413	-	DSP	chr6	7575528	+
5CDS-5UTR	ENST00000550308	ENST00000292513		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	CYP4F12	chr19	15789215	+	PTGER1	chr19	14585149	-
5CDS-5UTR	ENST00000324632	ENST00000292513		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	CYP4F12	chr19	15789215	+	PTGER1	chr19	14585149	-
Frame-shit	ENST00000230895	ENST00000304623		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000230895	ENST00000359640		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000230895	ENST00000511377		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000230895	ENST00000458100		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000230895	ENST00000503622		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000230895	ENST00000495388		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000432074	ENST00000304623		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000432074	ENST00000359640		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000432074	ENST00000511377		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000432074	ENST00000458100		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000432074	ENST00000503622		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000432074	ENST00000495388		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5UTR-3CDS	ENST00000510546	ENST00000304623		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5UTR-3CDS	ENST00000510546	ENST00000359640		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5UTR-intron	ENST00000510546	ENST00000511377		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5UTR-5UTR	ENST00000510546	ENST00000458100		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5UTR-intron	ENST00000510546	ENST00000503622		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
5UTR-intron	ENST00000510546	ENST00000495388		TCGA	RV	LIHC	TCGA-DD-AAVV-01A	DAP	chr5	10748287	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000403299	ENST00000215886		TCGA	RV	LIHC	TCGA-BC-A217-01A	CARD10	chr22	37911980	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000406271	ENST00000215886		TCGA	RV	LIHC	TCGA-BC-A217-01A	CARD10	chr22	37911980	-	LGALS2	chr22	37967938	-
In-frame	ENST00000251973	ENST00000215886		TCGA	RV	LIHC	TCGA-BC-A217-01A	CARD10	chr22	37911980	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000494166	ENST00000215886		TCGA	RV	LIHC	TCGA-BC-A217-01A	CARD10	chr22	37911980	-	LGALS2	chr22	37967938	-
5CDS-5UTR	ENST00000381096	ENST00000433372		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000381096	ENST00000331145		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000381096	ENST00000395759		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000381096	ENST00000325278		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-3UTR	ENST00000381096	ENST00000461101		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-5UTR	ENST00000512583	ENST00000433372		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000512583	ENST00000331145		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000512583	ENST00000395759		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000512583	ENST00000325278		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-3UTR	ENST00000512583	ENST00000461101		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-5UTR	ENST00000305107	ENST00000433372		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000305107	ENST00000331145		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000305107	ENST00000395759		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-intron	ENST00000305107	ENST00000325278		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5CDS-3UTR	ENST00000305107	ENST00000461101		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5UTR-5UTR	ENST00000506580	ENST00000433372		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5UTR-intron	ENST00000506580	ENST00000331145		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5UTR-intron	ENST00000506580	ENST00000395759		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5UTR-intron	ENST00000506580	ENST00000325278		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
5UTR-3UTR	ENST00000506580	ENST00000461101		TCGA	RV	LIHC	TCGA-BC-A217-01A	UGT2B4	chr4	70355157	-	MTHFD2L	chr4	75025772	+
In-frame	ENST00000338754	ENST00000215939		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TPST2	chr22	26932254	-	CRYBB1	chr22	26997985	-
Frame-shit	ENST00000398110	ENST00000215939		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TPST2	chr22	26932254	-	CRYBB1	chr22	26997985	-
Frame-shit	ENST00000403880	ENST00000215939		TCGA	RV	LIHC	TCGA-ZS-A9CF-01A	TPST2	chr22	26932254	-	CRYBB1	chr22	26997985	-
In-frame	ENST00000216455	ENST00000254286		TCGA	RV	LIHC	TCGA-BC-A216-01A	PSMA3	chr14	58714550	+	ACTR10	chr14	58697117	+
In-frame	ENST00000412908	ENST00000254286		TCGA	RV	LIHC	TCGA-BC-A216-01A	PSMA3	chr14	58714550	+	ACTR10	chr14	58697117	+
intron-3CDS	ENST00000557508	ENST00000254286		TCGA	RV	LIHC	TCGA-BC-A216-01A	PSMA3	chr14	58714550	+	ACTR10	chr14	58697117	+
intron-3CDS	ENST00000554456	ENST00000254286		TCGA	RV	LIHC	TCGA-BC-A216-01A	PSMA3	chr14	58714550	+	ACTR10	chr14	58697117	+
5CDS-5UTR	ENST00000374379	ENST00000373602		TCGA	RV	LIHC	TCGA-DD-A39V-01A	CLIC4	chr1	25072116	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000374379	ENST00000421922		TCGA	RV	LIHC	TCGA-DD-A39V-01A	CLIC4	chr1	25072116	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000374379	ENST00000483009		TCGA	RV	LIHC	TCGA-DD-A39V-01A	CLIC4	chr1	25072116	+	CCDC28B	chr1	32667514	+
3UTR-5UTR	ENST00000497755	ENST00000373602		TCGA	RV	LIHC	TCGA-DD-A39V-01A	CLIC4	chr1	25072116	+	CCDC28B	chr1	32667514	+
3UTR-5UTR	ENST00000497755	ENST00000421922		TCGA	RV	LIHC	TCGA-DD-A39V-01A	CLIC4	chr1	25072116	+	CCDC28B	chr1	32667514	+
3UTR-3UTR	ENST00000497755	ENST00000483009		TCGA	RV	LIHC	TCGA-DD-A39V-01A	CLIC4	chr1	25072116	+	CCDC28B	chr1	32667514	+
5CDS-intron	ENST00000340360	ENST00000449833		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000409161		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000423696		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000338508		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000409530		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000449116		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000357171		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000340360	ENST00000468619		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000449833		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000409161		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000423696		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000338508		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000409530		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000449116		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000357171		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000321448	ENST00000468619		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000449833		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000409161		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000423696		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000338508		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000409530		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000449116		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000357171		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000527087	ENST00000468619		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000449833		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000409161		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000423696		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000338508		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000409530		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000449116		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000357171		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
5UTR-intron	ENST00000533598	ENST00000468619		TCGA	RV	LIHC	TCGA-2Y-A9GS-01A	XRRA1	chr11	74641345	-	SHANK2	chr11	70821095	-
3UTR-intron	ENST00000295897	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AADD-01A	ALB	chr4	74286971	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000415165	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AADD-01A	ALB	chr4	74286971	+	DDX21	chr10	70723858	+
intron-intron	ENST00000503124	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AADD-01A	ALB	chr4	74286971	+	DDX21	chr10	70723858	+
intron-intron	ENST00000509063	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AADD-01A	ALB	chr4	74286971	+	DDX21	chr10	70723858	+
intron-intron	ENST00000401494	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AADD-01A	ALB	chr4	74286971	+	DDX21	chr10	70723858	+
intron-intron	ENST00000505649	ENST00000354185		TCGA	RV	LIHC	TCGA-DD-AADD-01A	ALB	chr4	74286971	+	DDX21	chr10	70723858	+
Frame-shit	ENST00000481739	ENST00000358625		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	RXRA	chr9	137218505	+	WDR5	chr9	137017105	+
Frame-shit	ENST00000481739	ENST00000425041		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	RXRA	chr9	137218505	+	WDR5	chr9	137017105	+
intron-3CDS	ENST00000356384	ENST00000358625		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	RXRA	chr9	137218505	+	WDR5	chr9	137017105	+
intron-3CDS	ENST00000356384	ENST00000425041		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	RXRA	chr9	137218505	+	WDR5	chr9	137017105	+
intron-3CDS	ENST00000540193	ENST00000358625		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	RXRA	chr9	137218505	+	WDR5	chr9	137017105	+
intron-3CDS	ENST00000540193	ENST00000425041		TCGA	RV	LIHC	TCGA-2Y-A9GZ-01A	RXRA	chr9	137218505	+	WDR5	chr9	137017105	+
5CDS-intron	ENST00000263097	ENST00000591997		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000263097	ENST00000251289		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000263097	ENST00000587001		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
3UTR-intron	ENST00000606983	ENST00000591997		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
3UTR-intron	ENST00000606983	ENST00000251289		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
3UTR-intron	ENST00000606983	ENST00000587001		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000348419	ENST00000591997		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000348419	ENST00000251289		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000348419	ENST00000587001		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000565096	ENST00000591997		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000565096	ENST00000251289		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000565096	ENST00000587001		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000562958	ENST00000591997		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000562958	ENST00000251289		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
5CDS-intron	ENST00000562958	ENST00000587001		TCGA	RV	LIHC	TCGA-DD-A116-01A	CNN2	chr19	1026723	+	WDR18	chr19	994019	+
intron-3CDS	ENST00000531028	ENST00000263278		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000531028	ENST00000599157		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000278559	ENST00000263278		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000278559	ENST00000599157		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000529629	ENST00000263278		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000529629	ENST00000599157		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000456580	ENST00000263278		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000456580	ENST00000599157		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	CAPN5	chr11	76804859	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000367590	ENST00000472647		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
In-frame	ENST00000367590	ENST00000367811		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
5CDS-intron	ENST00000367590	ENST00000469474		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
In-frame	ENST00000367589	ENST00000472647		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
In-frame	ENST00000367589	ENST00000367811		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
5CDS-intron	ENST00000367589	ENST00000469474		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
intron-3CDS	ENST00000467345	ENST00000472647		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
intron-3CDS	ENST00000467345	ENST00000367811		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
intron-intron	ENST00000467345	ENST00000469474		TCGA	RV	LIHC	TCGA-G3-A25U-01A	XPR1	chr1	180601406	+	NME7	chr1	169138792	-
5CDS-intron	ENST00000393078	ENST00000233057		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393078	ENST00000395127		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393078	ENST00000405334		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000485588	ENST00000233057		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000485588	ENST00000395127		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000485588	ENST00000405334		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393080	ENST00000233057		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393080	ENST00000395127		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000393080	ENST00000405334		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000467132	ENST00000233057		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000467132	ENST00000395127		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000467132	ENST00000405334		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000482740	ENST00000233057		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000482740	ENST00000395127		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000482740	ENST00000405334		TCGA	RV	LIHC	TCGA-K7-A6G5-01A	SERPINA3	chr14	95090389	+	EIF2AK2	chr2	37342384	-
intron-3CDS	ENST00000542051	ENST00000445593		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000542051	ENST00000521545		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
In-frame	ENST00000351270	ENST00000445593		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
In-frame	ENST00000351270	ENST00000521545		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000537906	ENST00000445593		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
5UTR-3CDS	ENST00000537906	ENST00000521545		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
In-frame	ENST00000541666	ENST00000445593		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
In-frame	ENST00000541666	ENST00000521545		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000460714	ENST00000445593		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
intron-3CDS	ENST00000460714	ENST00000521545		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	HABP2	chr10	115312949	+	LAPTM4B	chr8	98817581	+
5CDS-3UTR	ENST00000405015	ENST00000472729		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405015	ENST00000311832		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000405015	ENST00000538736		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000431489	ENST00000472729		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000431489	ENST00000311832		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000431489	ENST00000538736		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000354487	ENST00000472729		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000354487	ENST00000311832		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000354487	ENST00000538736		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000263991	ENST00000472729		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000263991	ENST00000311832		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000263991	ENST00000538736		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405289	ENST00000472729		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405289	ENST00000311832		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000405289	ENST00000538736		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
3UTR-3UTR	ENST00000496857	ENST00000472729		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
3UTR-3UTR	ENST00000496857	ENST00000311832		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
3UTR-intron	ENST00000496857	ENST00000538736		TCGA	RV	LIHC	TCGA-DD-A3A5-01A	EHBP1	chr2	63223901	+	COMMD1	chr2	62362966	+
In-frame	ENST00000393446	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393446	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393446	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
5CDS-5UTR	ENST00000393446	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000265437	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000265437	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000265437	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
5CDS-5UTR	ENST00000265437	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393451	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393451	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393451	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
5CDS-5UTR	ENST00000393451	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393449	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393449	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000393449	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
5CDS-5UTR	ENST00000393449	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000323984	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000323984	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000323984	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
5CDS-5UTR	ENST00000323984	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000432298	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000432298	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000432298	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000432298	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000422922	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000422922	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000422922	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000422922	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000487459	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000487459	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000487459	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000487459	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393443	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393443	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393443	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000393443	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393447	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393447	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393447	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000393447	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393444	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393444	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000393444	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000393444	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000465133	ENST00000347053		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000465133	ENST00000297135		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-3CDS	ENST00000465133	ENST00000393603		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
intron-5UTR	ENST00000465133	ENST00000475638		TCGA	RV	LIHC	TCGA-RC-A6M6-01A	ST7	chr7	116593745	+	COG5	chr7	107053077	-
In-frame	ENST00000293379	ENST00000552397		TCGA	RV	LIHC	TCGA-BC-A217-01A	ITGA5	chr12	54801433	-	GTSF1	chr12	54857081	-
In-frame	ENST00000293379	ENST00000305879		TCGA	RV	LIHC	TCGA-BC-A217-01A	ITGA5	chr12	54801433	-	GTSF1	chr12	54857081	-
5CDS-5UTR	ENST00000293379	ENST00000552395		TCGA	RV	LIHC	TCGA-BC-A217-01A	ITGA5	chr12	54801433	-	GTSF1	chr12	54857081	-
intron-3CDS	ENST00000547744	ENST00000552397		TCGA	RV	LIHC	TCGA-BC-A217-01A	ITGA5	chr12	54801433	-	GTSF1	chr12	54857081	-
intron-3CDS	ENST00000547744	ENST00000305879		TCGA	RV	LIHC	TCGA-BC-A217-01A	ITGA5	chr12	54801433	-	GTSF1	chr12	54857081	-
intron-5UTR	ENST00000547744	ENST00000552395		TCGA	RV	LIHC	TCGA-BC-A217-01A	ITGA5	chr12	54801433	-	GTSF1	chr12	54857081	-
5CDS-5UTR	ENST00000262809	ENST00000597960		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000262809	ENST00000610101		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000262809	ENST00000596558		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000262809	ENST00000222308		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000262809	ENST00000608443		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000262809	ENST00000453489		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000596124	ENST00000597960		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000596124	ENST00000610101		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000596124	ENST00000596558		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000596124	ENST00000222308		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000596124	ENST00000608443		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000596124	ENST00000453489		TCGA	RV	LIHC	TCGA-DD-AAE2-01A	ELL	chr19	18632731	-	FKBP8	chr19	18652805	-
In-frame	ENST00000283871	ENST00000273375		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	HGD	chr3	120371439	-	RABL3	chr3	120413071	-
5CDS-5UTR	ENST00000283871	ENST00000491398		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	HGD	chr3	120371439	-	RABL3	chr3	120413071	-
5CDS-intron	ENST00000283871	ENST00000483733		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	HGD	chr3	120371439	-	RABL3	chr3	120413071	-
intron-3CDS	ENST00000488183	ENST00000273375		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	HGD	chr3	120371439	-	RABL3	chr3	120413071	-
intron-5UTR	ENST00000488183	ENST00000491398		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	HGD	chr3	120371439	-	RABL3	chr3	120413071	-
intron-intron	ENST00000488183	ENST00000483733		TCGA	RV	LIHC	TCGA-BC-A10Z-01A	HGD	chr3	120371439	-	RABL3	chr3	120413071	-
Frame-shit	ENST00000264930	ENST00000230640		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	SLC12A7	chr5	1057586	-	SKIV2L2	chr5	54720548	+
In-frame	ENST00000264930	ENST00000545714		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	SLC12A7	chr5	1057586	-	SKIV2L2	chr5	54720548	+
5CDS-intron	ENST00000264930	ENST00000504388		TCGA	RV	LIHC	TCGA-2Y-A9H0-01A	SLC12A7	chr5	1057586	-	SKIV2L2	chr5	54720548	+
5CDS-intron	ENST00000396864	ENST00000557878		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
5CDS-intron	ENST00000396864	ENST00000559275		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
5CDS-intron	ENST00000396864	ENST00000324103		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
5CDS-intron	ENST00000396864	ENST00000382687		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
intron-intron	ENST00000557894	ENST00000557878		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
intron-intron	ENST00000557894	ENST00000559275		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
intron-intron	ENST00000557894	ENST00000324103		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
intron-intron	ENST00000557894	ENST00000382687		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	IRF9	chr14	24631533	+	RNF31	chr14	24629448	+
5CDS-intron	ENST00000367990	ENST00000264818		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000367990	ENST00000524462		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000367990	ENST00000525621		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000367990	ENST00000529370		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000367990	ENST00000529422		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000468465	ENST00000264818		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000468465	ENST00000524462		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000468465	ENST00000525621		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000468465	ENST00000529370		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000468465	ENST00000529422		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000463812	ENST00000264818		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000463812	ENST00000524462		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000463812	ENST00000525621		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000463812	ENST00000529370		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000463812	ENST00000529422		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000470459	ENST00000264818		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000470459	ENST00000524462		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000470459	ENST00000525621		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000470459	ENST00000529370		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000470459	ENST00000529422		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000464492	ENST00000264818		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000464492	ENST00000524462		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000464492	ENST00000525621		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000464492	ENST00000529370		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000464492	ENST00000529422		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000491350	ENST00000264818		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000491350	ENST00000524462		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000491350	ENST00000525621		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000491350	ENST00000529370		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
intron-intron	ENST00000491350	ENST00000529422		TCGA	RV	LIHC	TCGA-G3-A3CH-01A	APOA2	chr1	161192082	-	TYK2	chr19	10491352	-
Frame-shit	ENST00000272167	ENST00000369002		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	EPHX1	chr1	226033260	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000272167	ENST00000460009		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	EPHX1	chr1	226033260	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000366837	ENST00000369002		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	EPHX1	chr1	226033260	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000366837	ENST00000460009		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	EPHX1	chr1	226033260	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000467015	ENST00000369002		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	EPHX1	chr1	226033260	+	SEC63	chr6	108214782	-
intron-intron	ENST00000467015	ENST00000460009		TCGA	RV	LIHC	TCGA-CC-A7IL-01A	EPHX1	chr1	226033260	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000295897	ENST00000309364		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000359180		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000317589		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000355397		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000429027		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000539256		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000299275		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000538714		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000543806		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000424268		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000540972		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000295897	ENST00000510738		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000309364		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000359180		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000317589		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000355397		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000429027		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000539256		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000299275		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000538714		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000543806		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000424268		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000540972		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000415165	ENST00000510738		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000309364		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000359180		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000317589		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000355397		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000429027		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000539256		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000299275		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000538714		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000543806		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000424268		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000540972		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000503124	ENST00000510738		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000309364		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000359180		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000317589		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000355397		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000429027		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000539256		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000299275		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000538714		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000543806		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000424268		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000540972		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509063	ENST00000510738		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000309364		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000359180		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000317589		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000355397		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000429027		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000539256		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000299275		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000538714		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000543806		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000424268		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000540972		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000401494	ENST00000510738		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000309364		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000359180		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000317589		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000355397		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000429027		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000539256		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000299275		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000538714		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000543806		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000424268		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000540972		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000505649	ENST00000510738		TCGA	RV	LIHC	TCGA-ED-A459-01A	ALB	chr4	74286971	+	PLEKHA5	chr12	19441012	+
Frame-shit	ENST00000378017	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
Frame-shit	ENST00000378017	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
5CDS-intron	ENST00000378017	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
Frame-shit	ENST00000518547	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
Frame-shit	ENST00000518547	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
5CDS-intron	ENST00000518547	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
5UTR-3CDS	ENST00000354184	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
5UTR-3CDS	ENST00000354184	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
5UTR-intron	ENST00000354184	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000395508	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000395508	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-intron	ENST00000395508	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
Frame-shit	ENST00000325064	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
Frame-shit	ENST00000325064	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
5CDS-intron	ENST00000325064	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000431961	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000431961	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-intron	ENST00000431961	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000523587	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000523587	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-intron	ENST00000523587	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000524090	ENST00000318410		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-3CDS	ENST00000524090	ENST00000517845		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
intron-intron	ENST00000524090	ENST00000521109		TCGA	RV	LIHC	TCGA-QA-A7B7-01A	MTSS1	chr8	125597328	-	KIAA0196	chr8	126040949	-
Frame-shit	ENST00000481739	ENST00000531154		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
Frame-shit	ENST00000481739	ENST00000398006		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
5CDS-5UTR	ENST00000481739	ENST00000527228		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
5CDS-3UTR	ENST00000481739	ENST00000524880		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
5CDS-intron	ENST00000481739	ENST00000527377		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-3CDS	ENST00000356384	ENST00000531154		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-3CDS	ENST00000356384	ENST00000398006		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-5UTR	ENST00000356384	ENST00000527228		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-3UTR	ENST00000356384	ENST00000524880		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-intron	ENST00000356384	ENST00000527377		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-3CDS	ENST00000540193	ENST00000531154		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-3CDS	ENST00000540193	ENST00000398006		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-5UTR	ENST00000540193	ENST00000527228		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-3UTR	ENST00000540193	ENST00000524880		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
intron-intron	ENST00000540193	ENST00000527377		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	RXRA	chr9	137218505	+	ALG9	chr11	111657244	-
Frame-shit	ENST00000370449	ENST00000433211		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
In-frame	ENST00000370449	ENST00000373744		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000370449	ENST00000545309		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
5CDS-5UTR	ENST00000370449	ENST00000373735		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
Frame-shit	ENST00000370434	ENST00000433211		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
In-frame	ENST00000370434	ENST00000373744		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
5CDS-intron	ENST00000370434	ENST00000545309		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
5CDS-5UTR	ENST00000370434	ENST00000373735		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000496621	ENST00000433211		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000496621	ENST00000373744		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
intron-intron	ENST00000496621	ENST00000545309		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
intron-5UTR	ENST00000496621	ENST00000373735		TCGA	RV	LIHC	TCGA-DD-AAEA-01A	ABCC2	chr10	101544538	+	CTNNA3	chr10	67680375	-
intron-3CDS	ENST00000292205	ENST00000295682		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
intron-5UTR	ENST00000292205	ENST00000490672		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
Frame-shit	ENST00000368474	ENST00000295682		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
5CDS-5UTR	ENST00000368474	ENST00000490672		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
intron-3CDS	ENST00000368471	ENST00000295682		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
intron-5UTR	ENST00000368471	ENST00000490672		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
intron-3CDS	ENST00000471068	ENST00000295682		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
intron-5UTR	ENST00000471068	ENST00000490672		TCGA	RV	LIHC	TCGA-RC-A6M4-01A	ADAR	chr1	154580468	-	KRTCAP2	chr1	155142333	-
5UTR-3CDS	ENST00000468311	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5UTR-intron	ENST00000468311	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5UTR-5UTR	ENST00000468311	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5UTR-5UTR	ENST00000468311	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5UTR-5UTR	ENST00000468311	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5UTR-intron	ENST00000468311	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
Frame-shit	ENST00000368010	ENST00000367990		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5CDS-intron	ENST00000368010	ENST00000468465		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5CDS-5UTR	ENST00000368010	ENST00000463812		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5CDS-5UTR	ENST00000368010	ENST00000470459		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5CDS-5UTR	ENST00000368010	ENST00000464492		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5CDS-intron	ENST00000368010	ENST00000491350		TCGA	RV	LIHC	TCGA-CC-5263-01A	PFDN2	chr1	161087742	-	APOA2	chr1	161192840	-
5CDS-intron	ENST00000266546	ENST00000433346		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-intron	ENST00000266546	ENST00000449039		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000266546	ENST00000007969		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000266546	ENST00000323702		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000266546	ENST00000443597		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000266546	ENST00000436789		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000266546	ENST00000429740		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-intron	ENST00000537408	ENST00000433346		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-intron	ENST00000537408	ENST00000449039		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000537408	ENST00000007969		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000537408	ENST00000323702		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000537408	ENST00000443597		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000537408	ENST00000436789		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
5CDS-3UTR	ENST00000537408	ENST00000429740		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-intron	ENST00000331148	ENST00000433346		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-intron	ENST00000331148	ENST00000449039		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-3UTR	ENST00000331148	ENST00000007969		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-3UTR	ENST00000331148	ENST00000323702		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-3UTR	ENST00000331148	ENST00000443597		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-3UTR	ENST00000331148	ENST00000436789		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
intron-3UTR	ENST00000331148	ENST00000429740		TCGA	RV	LIHC	TCGA-DD-AADA-01A	CLSTN3	chr12	7295907	+	LRRC23	chr12	7023055	+
In-frame	ENST00000582888	ENST00000007699		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
5CDS-5UTR	ENST00000582888	ENST00000570627		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
In-frame	ENST00000602676	ENST00000007699		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
5CDS-5UTR	ENST00000602676	ENST00000570627		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
In-frame	ENST00000322297	ENST00000007699		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
5CDS-5UTR	ENST00000322297	ENST00000570627		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
In-frame	ENST00000583542	ENST00000007699		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
5CDS-5UTR	ENST00000583542	ENST00000570627		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
intron-3CDS	ENST00000588673	ENST00000007699		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
intron-5UTR	ENST00000588673	ENST00000570627		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	OAZ1	chr19	2269743	+	YBX2	chr17	7195378	-
Frame-shit	ENST00000162330	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000162330	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000546196	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000546196	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
intron-3CDS	ENST00000566982	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
intron-intron	ENST00000566982	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000393422	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000393422	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
intron-3CDS	ENST00000535626	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
intron-intron	ENST00000535626	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000538440	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000538440	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000418647	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000418647	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000542031	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000542031	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000420641	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000420641	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000393420	ENST00000283882		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000393420	ENST00000564286		TCGA	RV	LIHC	TCGA-CC-5263-01A	BCAR1	chr16	75276368	-	CFDP1	chr16	75327940	-
In-frame	ENST00000254260	ENST00000253188		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	RHPN2	chr19	33535155	-	SLC7A10	chr19	33703908	-
5UTR-3CDS	ENST00000400226	ENST00000253188		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	RHPN2	chr19	33535155	-	SLC7A10	chr19	33703908	-
intron-3CDS	ENST00000588683	ENST00000253188		TCGA	RV	LIHC	TCGA-DD-A4NA-01A	RHPN2	chr19	33535155	-	SLC7A10	chr19	33703908	-
In-frame	ENST00000217407	ENST00000262865		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LBP	chr20	36983809	+	BPI	chr20	36952272	+
5CDS-intron	ENST00000217407	ENST00000489102		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LBP	chr20	36983809	+	BPI	chr20	36952272	+
5CDS-intron	ENST00000217407	ENST00000451435		TCGA	RV	LIHC	TCGA-BC-A8YO-01A	LBP	chr20	36983809	+	BPI	chr20	36952272	+
5CDS-intron	ENST00000255030	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000255030	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000473196	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000473196	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000437342	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000437342	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000368112	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000368112	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000368111	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000368111	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000368110	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000368110	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000343919	ENST00000484427		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-intron	ENST00000343919	ENST00000371764		TCGA	RV	LIHC	TCGA-DD-A4NB-01A	CRP	chr1	159682079	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000418066	ENST00000242783		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
intron-intron	ENST00000418066	ENST00000587429		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
intron-intron	ENST00000418066	ENST00000342216		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
In-frame	ENST00000409920	ENST00000242783		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5CDS-intron	ENST00000409920	ENST00000587429		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5CDS-intron	ENST00000409920	ENST00000342216		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
In-frame	ENST00000394295	ENST00000242783		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5CDS-intron	ENST00000394295	ENST00000587429		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5CDS-intron	ENST00000394295	ENST00000342216		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5UTR-3CDS	ENST00000536030	ENST00000242783		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5UTR-intron	ENST00000536030	ENST00000587429		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
5UTR-intron	ENST00000536030	ENST00000342216		TCGA	RV	LIHC	TCGA-BC-4072-01B	ANXA4	chr2	70008706	+	PKN1	chr19	14578377	+
3UTR-intron	ENST00000295897	ENST00000371917		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000295897	ENST00000493140		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000415165	ENST00000371917		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000415165	ENST00000493140		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000503124	ENST00000371917		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000503124	ENST00000493140		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000509063	ENST00000371917		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000509063	ENST00000493140		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000401494	ENST00000371917		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000401494	ENST00000493140		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000505649	ENST00000371917		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000505649	ENST00000493140		TCGA	RV	LIHC	TCGA-XR-A8TD-01A	ALB	chr4	74286971	+	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LIHC	TCGA-DD-A1EK-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
In-frame	ENST00000295897	ENST00000243498		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000295897	ENST00000509980		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000295897	ENST00000379663		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000295897	ENST00000512454		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
In-frame	ENST00000415165	ENST00000243498		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000415165	ENST00000509980		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000415165	ENST00000379663		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000415165	ENST00000512454		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-3CDS	ENST00000503124	ENST00000243498		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-intron	ENST00000503124	ENST00000509980		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-intron	ENST00000503124	ENST00000379663		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5UTR-intron	ENST00000503124	ENST00000512454		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
In-frame	ENST00000509063	ENST00000243498		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000509063	ENST00000509980		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000509063	ENST00000379663		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000509063	ENST00000512454		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
In-frame	ENST00000401494	ENST00000243498		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000401494	ENST00000509980		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000401494	ENST00000379663		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
5CDS-intron	ENST00000401494	ENST00000512454		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-3CDS	ENST00000505649	ENST00000243498		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-intron	ENST00000505649	ENST00000509980		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-intron	ENST00000505649	ENST00000379663		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
intron-intron	ENST00000505649	ENST00000512454		TCGA	RV	LIHC	TCGA-XR-A8TG-01A	ALB	chr4	74270123	+	EXOSC9	chr4	122737927	+
Frame-shit	ENST00000323963	ENST00000287611		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000323963	ENST00000265023		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000323963	ENST00000447445		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
Frame-shit	ENST00000440191	ENST00000287611		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000440191	ENST00000265023		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000440191	ENST00000447445		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
Frame-shit	ENST00000356531	ENST00000287611		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000356531	ENST00000265023		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000356531	ENST00000447445		TCGA	RV	LIHC	TCGA-BC-A10Y-01A	EIF4A2	chr3	186504062	+	KNG1	chr3	186461494	+
In-frame	ENST00000253925	ENST00000398606		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
In-frame	ENST00000253925	ENST00000398603		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
5CDS-3UTR	ENST00000253925	ENST00000498765		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
In-frame	ENST00000389547	ENST00000398606		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
In-frame	ENST00000389547	ENST00000398603		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
5CDS-3UTR	ENST00000389547	ENST00000498765		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000530548	ENST00000398606		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
intron-3CDS	ENST00000530548	ENST00000398603		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
intron-3UTR	ENST00000530548	ENST00000498765		TCGA	LD	LIHC	TCGA-2V-A95S-01A	PPFIA1	chr11	70118542	+	GSTP1	chr11	67352156	+
In-frame	ENST00000381792	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000346753	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000406725	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000406856	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000442782	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9GT-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
In-frame	ENST00000370818	ENST00000370828		TCGA	LD	LIHC	TCGA-2Y-A9GU-01A	GPC3	chrX	132730468	-	GPC4	chrX	132473369	-
5CDS-5UTR	ENST00000370818	ENST00000535467		TCGA	LD	LIHC	TCGA-2Y-A9GU-01A	GPC3	chrX	132730468	-	GPC4	chrX	132473369	-
In-frame	ENST00000394299	ENST00000370828		TCGA	LD	LIHC	TCGA-2Y-A9GU-01A	GPC3	chrX	132730468	-	GPC4	chrX	132473369	-
5CDS-5UTR	ENST00000394299	ENST00000535467		TCGA	LD	LIHC	TCGA-2Y-A9GU-01A	GPC3	chrX	132730468	-	GPC4	chrX	132473369	-
In-frame	ENST00000543339	ENST00000370828		TCGA	LD	LIHC	TCGA-2Y-A9GU-01A	GPC3	chrX	132730468	-	GPC4	chrX	132473369	-
5CDS-5UTR	ENST00000543339	ENST00000535467		TCGA	LD	LIHC	TCGA-2Y-A9GU-01A	GPC3	chrX	132730468	-	GPC4	chrX	132473369	-
3UTR-3CDS	ENST00000541421	ENST00000332830		TCGA	LD	LIHC	TCGA-2Y-A9GZ-01A	SMLR1	chr6	131156174	+	PHF12	chr17	27235899	-
3UTR-3UTR	ENST00000541421	ENST00000577226		TCGA	LD	LIHC	TCGA-2Y-A9GZ-01A	SMLR1	chr6	131156174	+	PHF12	chr17	27235899	-
3UTR-intron	ENST00000541421	ENST00000268756		TCGA	LD	LIHC	TCGA-2Y-A9GZ-01A	SMLR1	chr6	131156174	+	PHF12	chr17	27235899	-
3UTR-intron	ENST00000541421	ENST00000582655		TCGA	LD	LIHC	TCGA-2Y-A9GZ-01A	SMLR1	chr6	131156174	+	PHF12	chr17	27235899	-
intron-3CDS	ENST00000561234	ENST00000416151		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000561234	ENST00000249776		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000561234	ENST00000448395		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000561234	ENST00000608100		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
5UTR-3CDS	ENST00000416165	ENST00000416151		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
5UTR-3CDS	ENST00000416165	ENST00000249776		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
5UTR-3CDS	ENST00000416165	ENST00000448395		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
5UTR-3CDS	ENST00000416165	ENST00000608100		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000560846	ENST00000416151		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000560846	ENST00000249776		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000560846	ENST00000448395		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
intron-3CDS	ENST00000560846	ENST00000608100		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	BAHD1	chr15	40733467	+	KNSTRN	chr15	40678563	+
In-frame	ENST00000331483	ENST00000265132		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	P4HB	chr17	79813018	-	AMBP	chr9	116825038	-
intron-3CDS	ENST00000576390	ENST00000265132		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	P4HB	chr17	79813018	-	AMBP	chr9	116825038	-
In-frame	ENST00000439918	ENST00000265132		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	P4HB	chr17	79813018	-	AMBP	chr9	116825038	-
5UTR-3CDS	ENST00000472244	ENST00000265132		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	P4HB	chr17	79813018	-	AMBP	chr9	116825038	-
intron-3CDS	ENST00000258646	ENST00000376460		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-3CDS	ENST00000258646	ENST00000339416		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-intron	ENST00000258646	ENST00000448493		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-intron	ENST00000258646	ENST00000442173		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-intron	ENST00000258646	ENST00000461998		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-3CDS	ENST00000378302	ENST00000376460		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-3CDS	ENST00000378302	ENST00000339416		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-intron	ENST00000378302	ENST00000448493		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-intron	ENST00000378302	ENST00000442173		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-intron	ENST00000378302	ENST00000461998		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-3CDS	ENST00000471984	ENST00000376460		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-3CDS	ENST00000471984	ENST00000339416		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-intron	ENST00000471984	ENST00000448493		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-intron	ENST00000471984	ENST00000442173		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-intron	ENST00000471984	ENST00000461998		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-3CDS	ENST00000546015	ENST00000376460		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-3CDS	ENST00000546015	ENST00000339416		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-intron	ENST00000546015	ENST00000448493		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-intron	ENST00000546015	ENST00000442173		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
5UTR-intron	ENST00000546015	ENST00000461998		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	RCBTB1	chr13	50154641	-	DOCK9	chr13	99460061	-
intron-3CDS	ENST00000464524	ENST00000273590		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
intron-3UTR	ENST00000464524	ENST00000493381		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
5UTR-3CDS	ENST00000418611	ENST00000273590		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
5UTR-3UTR	ENST00000418611	ENST00000493381		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
Frame-shit	ENST00000389061	ENST00000273590		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
5CDS-3UTR	ENST00000389061	ENST00000493381		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
5UTR-3CDS	ENST00000541314	ENST00000273590		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
5UTR-3UTR	ENST00000541314	ENST00000493381		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	SACM1L	chr3	45730989	+	TCTA	chr3	49450489	+
intron-3CDS	ENST00000341846	ENST00000356341		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000341846	ENST00000530617		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000341846	ENST00000278568		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000341846	ENST00000528203		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000341846	ENST00000525542		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000524816	ENST00000356341		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000524816	ENST00000530617		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000524816	ENST00000278568		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000524816	ENST00000528203		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000524816	ENST00000525542		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000541857	ENST00000356341		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000541857	ENST00000530617		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000541857	ENST00000278568		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000541857	ENST00000528203		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000541857	ENST00000525542		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000525887	ENST00000356341		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000525887	ENST00000530617		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000525887	ENST00000278568		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000525887	ENST00000528203		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000525887	ENST00000525542		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000528870	ENST00000356341		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000528870	ENST00000530617		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000528870	ENST00000278568		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000528870	ENST00000528203		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000528870	ENST00000525542		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-3CDS	ENST00000529044	ENST00000356341		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000529044	ENST00000530617		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000529044	ENST00000278568		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-intron	ENST00000529044	ENST00000528203		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
intron-5UTR	ENST00000529044	ENST00000525542		TCGA	LD	LIHC	TCGA-2Y-A9H0-01A	TRIM29	chr11	120055958	-	PAK1	chr11	77034405	-
5CDS-intron	ENST00000374580	ENST00000445791		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	BMPR2	chr2	203242273	+	TEX41	chr2	145939771	+
5CDS-intron	ENST00000374574	ENST00000445791		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	BMPR2	chr2	203242273	+	TEX41	chr2	145939771	+
intron-intron	ENST00000479069	ENST00000445791		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	BMPR2	chr2	203242273	+	TEX41	chr2	145939771	+
Frame-shit	ENST00000389567	ENST00000338446		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000389567	ENST00000360570		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000389567	ENST00000393035		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000389567	ENST00000393034		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000389567	ENST00000464668		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000289135	ENST00000338446		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000289135	ENST00000360570		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000289135	ENST00000393035		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000289135	ENST00000393034		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
Frame-shit	ENST00000289135	ENST00000464668		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
intron-3CDS	ENST00000460133	ENST00000338446		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
intron-3CDS	ENST00000460133	ENST00000360570		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
intron-3CDS	ENST00000460133	ENST00000393035		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
intron-3CDS	ENST00000460133	ENST00000393034		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
intron-3CDS	ENST00000460133	ENST00000464668		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	ESYT3	chr3	138170931	+	FAIM	chr3	138347949	+
In-frame	ENST00000381792	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000381792	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000346753	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000346753	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000406725	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406725	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000406856	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000406856	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
Frame-shit	ENST00000442782	ENST00000393799		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000530427		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000393800		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000534534		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000524845		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000265637		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000524904		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000393801		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000265636		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000529710		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
5CDS-intron	ENST00000442782	ENST00000527403		TCGA	LD	LIHC	TCGA-2Y-A9H2-01A	TMPRSS6	chr22	37499256	-	PPP6R3	chr11	68377372	+
3UTR-3CDS	ENST00000394859	ENST00000488476		TCGA	LD	LIHC	TCGA-2Y-A9H3-01A	ANKRD13B	chr17	27940763	+	IGHJ5	chr14	106330064	-
In-frame	ENST00000430249	ENST00000199940		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000430249	ENST00000360351		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000430249	ENST00000361559		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000430249	ENST00000392194		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000430249	ENST00000447185		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
5CDS-3UTR	ENST00000430249	ENST00000475600		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000233072	ENST00000199940		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000233072	ENST00000360351		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000233072	ENST00000361559		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000233072	ENST00000392194		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000233072	ENST00000447185		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
5CDS-3UTR	ENST00000233072	ENST00000475600		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000451903	ENST00000199940		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000451903	ENST00000360351		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000451903	ENST00000361559		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000451903	ENST00000392194		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000451903	ENST00000447185		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3UTR	ENST00000451903	ENST00000475600		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000497121	ENST00000199940		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000497121	ENST00000360351		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000497121	ENST00000361559		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000497121	ENST00000392194		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3CDS	ENST00000497121	ENST00000447185		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
intron-3UTR	ENST00000497121	ENST00000475600		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	CPS1	chr2	211447433	+	MAP2	chr2	210570304	+
In-frame	ENST00000262370	ENST00000444310		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	MGRN1	chr16	4718313	+	C16orf96	chr16	4621562	+
In-frame	ENST00000415496	ENST00000444310		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	MGRN1	chr16	4718313	+	C16orf96	chr16	4621562	+
In-frame	ENST00000399577	ENST00000444310		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	MGRN1	chr16	4718313	+	C16orf96	chr16	4621562	+
In-frame	ENST00000588994	ENST00000444310		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	MGRN1	chr16	4718313	+	C16orf96	chr16	4621562	+
In-frame	ENST00000586183	ENST00000444310		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	MGRN1	chr16	4718313	+	C16orf96	chr16	4621562	+
3UTR-3CDS	ENST00000588015	ENST00000444310		TCGA	LD	LIHC	TCGA-2Y-A9H6-01A	MGRN1	chr16	4718313	+	C16orf96	chr16	4621562	+
5CDS-intron	ENST00000316403	ENST00000390168		TCGA	LD	LIHC	TCGA-2Y-A9H7-01A	CLU	chr8	27467992	-	H19	chr11	2017228	-
5CDS-intron	ENST00000546343	ENST00000390168		TCGA	LD	LIHC	TCGA-2Y-A9H7-01A	CLU	chr8	27467992	-	H19	chr11	2017228	-
5CDS-intron	ENST00000560366	ENST00000390168		TCGA	LD	LIHC	TCGA-2Y-A9H7-01A	CLU	chr8	27467992	-	H19	chr11	2017228	-
5CDS-intron	ENST00000405140	ENST00000390168		TCGA	LD	LIHC	TCGA-2Y-A9H7-01A	CLU	chr8	27467992	-	H19	chr11	2017228	-
5CDS-intron	ENST00000523500	ENST00000390168		TCGA	LD	LIHC	TCGA-2Y-A9H7-01A	CLU	chr8	27467992	-	H19	chr11	2017228	-
In-frame	ENST00000251527	ENST00000284601		TCGA	LD	LIHC	TCGA-2Y-A9H8-01A	ESYT2	chr7	158540885	-	PPP1R3A	chr7	113558352	-
intron-3CDS	ENST00000497111	ENST00000284601		TCGA	LD	LIHC	TCGA-2Y-A9H8-01A	ESYT2	chr7	158540885	-	PPP1R3A	chr7	113558352	-
intron-3CDS	ENST00000435514	ENST00000284601		TCGA	LD	LIHC	TCGA-2Y-A9H8-01A	ESYT2	chr7	158540885	-	PPP1R3A	chr7	113558352	-
intron-5UTR	ENST00000503238	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508632		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
Frame-shit	ENST00000372396	ENST00000562955		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
5CDS-intron	ENST00000372396	ENST00000372442		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
5CDS-intron	ENST00000372396	ENST00000310739		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
5CDS-intron	ENST00000372396	ENST00000372450		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
5CDS-intron	ENST00000372396	ENST00000471177		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
intron-3CDS	ENST00000463151	ENST00000562955		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
intron-intron	ENST00000463151	ENST00000372442		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
intron-intron	ENST00000463151	ENST00000310739		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
intron-intron	ENST00000463151	ENST00000372450		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
intron-intron	ENST00000463151	ENST00000471177		TCGA	LD	LIHC	TCGA-2Y-A9H9-01A	KDM4A	chr1	44134970	+	SZT2	chr1	43870051	+
In-frame	ENST00000502732	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
Frame-shit	ENST00000502732	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
In-frame	ENST00000367623	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
Frame-shit	ENST00000367623	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
In-frame	ENST00000507173	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
Frame-shit	ENST00000507173	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
In-frame	ENST00000511413	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
Frame-shit	ENST00000511413	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
In-frame	ENST00000392043	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
Frame-shit	ENST00000392043	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000408940	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000408940	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000344730	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000344730	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000512653	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000512653	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000504405	ENST00000271751		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
intron-3CDS	ENST00000504405	ENST00000367007		TCGA	LD	LIHC	TCGA-2Y-A9HA-01A	ABL2	chr1	179198376	-	KCNH1	chr1	210857480	-
In-frame	ENST00000314100	ENST00000371477		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	BTBD9	chr6	38224185	-	CDC5L	chr6	44413392	+
In-frame	ENST00000481247	ENST00000371477		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	BTBD9	chr6	38224185	-	CDC5L	chr6	44413392	+
In-frame	ENST00000419706	ENST00000371477		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	BTBD9	chr6	38224185	-	CDC5L	chr6	44413392	+
Frame-shit	ENST00000408958	ENST00000371477		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	BTBD9	chr6	38224185	-	CDC5L	chr6	44413392	+
Frame-shit	ENST00000403056	ENST00000371477		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	BTBD9	chr6	38224185	-	CDC5L	chr6	44413392	+
Frame-shit	ENST00000238667	ENST00000419727		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000238667	ENST00000559773		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000238667	ENST00000437176		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000238667	ENST00000435893		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000238667	ENST00000267569		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
Frame-shit	ENST00000539311	ENST00000419727		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000539311	ENST00000559773		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000539311	ENST00000437176		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000539311	ENST00000435893		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000539311	ENST00000267569		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
3UTR-3CDS	ENST00000556241	ENST00000419727		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
3UTR-intron	ENST00000556241	ENST00000559773		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
3UTR-intron	ENST00000556241	ENST00000437176		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
3UTR-intron	ENST00000556241	ENST00000435893		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
3UTR-intron	ENST00000556241	ENST00000267569		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
Frame-shit	ENST00000553587	ENST00000419727		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000553587	ENST00000559773		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000553587	ENST00000437176		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000553587	ENST00000435893		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000553587	ENST00000267569		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
intron-3CDS	ENST00000556856	ENST00000419727		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
intron-intron	ENST00000556856	ENST00000559773		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
intron-intron	ENST00000556856	ENST00000437176		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
intron-intron	ENST00000556856	ENST00000435893		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
intron-intron	ENST00000556856	ENST00000267569		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
Frame-shit	ENST00000555027	ENST00000419727		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000555027	ENST00000559773		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000555027	ENST00000437176		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000555027	ENST00000435893		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
5CDS-intron	ENST00000555027	ENST00000267569		TCGA	LD	LIHC	TCGA-4R-AA8I-01A	FLVCR2	chr14	76101356	+	JDP2	chr14	75935993	+
Frame-shit	ENST00000325722	ENST00000251195		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5CDS-intron	ENST00000325722	ENST00000466308		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5CDS-intron	ENST00000325722	ENST00000373220		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5CDS-intron	ENST00000325722	ENST00000520551		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5CDS-intron	ENST00000325722	ENST00000318121		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
intron-3CDS	ENST00000373266	ENST00000251195		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
intron-intron	ENST00000373266	ENST00000466308		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
intron-intron	ENST00000373266	ENST00000373220		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
intron-intron	ENST00000373266	ENST00000520551		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
intron-intron	ENST00000373266	ENST00000318121		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5UTR-3CDS	ENST00000485551	ENST00000251195		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000485551	ENST00000466308		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000485551	ENST00000373220		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000485551	ENST00000520551		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
5UTR-intron	ENST00000485551	ENST00000318121		TCGA	LD	LIHC	TCGA-5C-A9VG-01A	KIAA0319L	chr1	35936464	-	CLSPN	chr1	36230927	-
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-5R-AA1D-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
In-frame	ENST00000255192	ENST00000396137		TCGA	LD	LIHC	TCGA-BC-4073-01B	BHMT2	chr5	78365638	+	JMY	chr5	78573733	+
5CDS-intron	ENST00000255192	ENST00000412001		TCGA	LD	LIHC	TCGA-BC-4073-01B	BHMT2	chr5	78365638	+	JMY	chr5	78573733	+
In-frame	ENST00000521567	ENST00000396137		TCGA	LD	LIHC	TCGA-BC-4073-01B	BHMT2	chr5	78365638	+	JMY	chr5	78573733	+
5CDS-intron	ENST00000521567	ENST00000412001		TCGA	LD	LIHC	TCGA-BC-4073-01B	BHMT2	chr5	78365638	+	JMY	chr5	78573733	+
In-frame	ENST00000317361	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
In-frame	ENST00000317361	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
In-frame	ENST00000317361	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
5CDS-5UTR	ENST00000317361	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399767	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399767	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399767	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
5CDS-5UTR	ENST00000399767	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399774	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399774	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399774	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
5CDS-5UTR	ENST00000399774	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399765	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399765	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000399765	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
5CDS-5UTR	ENST00000399765	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
3UTR-3CDS	ENST00000342111	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
3UTR-3CDS	ENST00000342111	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
3UTR-3CDS	ENST00000342111	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
3UTR-5UTR	ENST00000342111	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
In-frame	ENST00000551952	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
In-frame	ENST00000551952	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
In-frame	ENST00000551952	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
5CDS-5UTR	ENST00000551952	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
intron-3CDS	ENST00000473439	ENST00000253413		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
intron-3CDS	ENST00000473439	ENST00000399796		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
intron-3CDS	ENST00000473439	ENST00000399798		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
intron-5UTR	ENST00000473439	ENST00000478963		TCGA	LD	LIHC	TCGA-BC-4073-01B	BID	chr22	18220783	-	ATP6V1E1	chr22	18096086	-
Frame-shit	ENST00000401084	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
5UTR-3CDS	ENST00000264203	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
Frame-shit	ENST00000375142	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
intron-3CDS	ENST00000433834	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
Frame-shit	ENST00000264202	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
5UTR-3CDS	ENST00000482808	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
intron-3CDS	ENST00000375144	ENST00000361640		TCGA	LD	LIHC	TCGA-BC-4073-01B	CAPZB	chr1	19811930	-	AKR7A3	chr1	19612866	-
Frame-shit	ENST00000477853	ENST00000375217		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000477853	ENST00000375226		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000477853	ENST00000375267		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000477853	ENST00000375254		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000477853	ENST00000375225		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000477853	ENST00000429347		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000477853	ENST00000375224		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000477853	ENST00000543981		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000477853	ENST00000467272		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000477853	ENST00000375218		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000480380	ENST00000375217		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000480380	ENST00000375226		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000480380	ENST00000375267		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000480380	ENST00000375254		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000480380	ENST00000375225		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000480380	ENST00000429347		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000480380	ENST00000375224		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000480380	ENST00000543981		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000480380	ENST00000467272		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000480380	ENST00000375218		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375199	ENST00000375217		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375199	ENST00000375226		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375199	ENST00000375267		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375199	ENST00000375254		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375199	ENST00000375225		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375199	ENST00000429347		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375199	ENST00000375224		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375199	ENST00000543981		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375199	ENST00000467272		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375199	ENST00000375218		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375208	ENST00000375217		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375208	ENST00000375226		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375208	ENST00000375267		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
Frame-shit	ENST00000375208	ENST00000375254		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375208	ENST00000375225		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375208	ENST00000429347		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375208	ENST00000375224		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375208	ENST00000543981		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375208	ENST00000467272		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5CDS-intron	ENST00000375208	ENST00000375218		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000356068	ENST00000375217		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000356068	ENST00000375226		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000356068	ENST00000375267		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-3CDS	ENST00000356068	ENST00000375254		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000356068	ENST00000375225		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000356068	ENST00000429347		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000356068	ENST00000375224		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000356068	ENST00000543981		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000356068	ENST00000467272		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
intron-intron	ENST00000356068	ENST00000375218		TCGA	LD	LIHC	TCGA-BC-4073-01B	EMC1	chr1	19571400	-	UBR4	chr1	19451184	-
5UTR-3CDS	ENST00000342362	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
5UTR-3CDS	ENST00000382002	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000231423	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000513753	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000397391	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000348262	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000542609	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000310101	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000511486	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000509934	ENST00000231420		TCGA	LD	LIHC	TCGA-BC-4073-01B	PRLR	chr5	35230370	-	AGXT2	chr5	35014224	-
Frame-shit	ENST00000244040	ENST00000475243		TCGA	LD	LIHC	TCGA-BC-4073-01B	RAB22A	chr20	56886178	+	VAPB	chr20	56993267	+
Frame-shit	ENST00000244040	ENST00000395802		TCGA	LD	LIHC	TCGA-BC-4073-01B	RAB22A	chr20	56886178	+	VAPB	chr20	56993267	+
5CDS-3UTR	ENST00000244040	ENST00000265619		TCGA	LD	LIHC	TCGA-BC-4073-01B	RAB22A	chr20	56886178	+	VAPB	chr20	56993267	+
3UTR-3CDS	ENST00000488949	ENST00000475243		TCGA	LD	LIHC	TCGA-BC-4073-01B	RAB22A	chr20	56886178	+	VAPB	chr20	56993267	+
3UTR-3CDS	ENST00000488949	ENST00000395802		TCGA	LD	LIHC	TCGA-BC-4073-01B	RAB22A	chr20	56886178	+	VAPB	chr20	56993267	+
3UTR-3UTR	ENST00000488949	ENST00000265619		TCGA	LD	LIHC	TCGA-BC-4073-01B	RAB22A	chr20	56886178	+	VAPB	chr20	56993267	+
3UTR-intron	ENST00000475548	ENST00000406516		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
3UTR-intron	ENST00000475548	ENST00000444929		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
3UTR-intron	ENST00000475548	ENST00000331728		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
3UTR-intron	ENST00000475548	ENST00000333611		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
3UTR-intron	ENST00000475548	ENST00000340552		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
3UTR-intron	ENST00000475548	ENST00000467301		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000358743	ENST00000406516		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000358743	ENST00000444929		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000358743	ENST00000331728		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000358743	ENST00000333611		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000358743	ENST00000340552		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000358743	ENST00000467301		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000347557	ENST00000406516		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000347557	ENST00000444929		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000347557	ENST00000331728		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000347557	ENST00000333611		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000347557	ENST00000340552		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000347557	ENST00000467301		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000333137	ENST00000406516		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000333137	ENST00000444929		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000333137	ENST00000331728		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000333137	ENST00000333611		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000333137	ENST00000340552		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
5CDS-intron	ENST00000333137	ENST00000467301		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
intron-intron	ENST00000404574	ENST00000406516		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
intron-intron	ENST00000404574	ENST00000444929		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
intron-intron	ENST00000404574	ENST00000331728		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
intron-intron	ENST00000404574	ENST00000333611		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
intron-intron	ENST00000404574	ENST00000340552		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
intron-intron	ENST00000404574	ENST00000467301		TCGA	LD	LIHC	TCGA-BC-4073-01B	SMTN	chr22	31484099	+	LIMK2	chr22	31621706	+
Frame-shit	ENST00000262096	ENST00000324849		TCGA	LD	LIHC	TCGA-BC-4073-01B	ZDHHC2	chr8	17014362	+	VPS37A	chr8	17143856	+
5CDS-intron	ENST00000262096	ENST00000324815		TCGA	LD	LIHC	TCGA-BC-4073-01B	ZDHHC2	chr8	17014362	+	VPS37A	chr8	17143856	+
5CDS-intron	ENST00000262096	ENST00000521829		TCGA	LD	LIHC	TCGA-BC-4073-01B	ZDHHC2	chr8	17014362	+	VPS37A	chr8	17143856	+
5CDS-intron	ENST00000262096	ENST00000521005		TCGA	LD	LIHC	TCGA-BC-4073-01B	ZDHHC2	chr8	17014362	+	VPS37A	chr8	17143856	+
5CDS-intron	ENST00000262096	ENST00000521162		TCGA	LD	LIHC	TCGA-BC-4073-01B	ZDHHC2	chr8	17014362	+	VPS37A	chr8	17143856	+
In-frame	ENST00000355072	ENST00000398051		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
In-frame	ENST00000355072	ENST00000398052		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
In-frame	ENST00000355072	ENST00000504933		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
In-frame	ENST00000355072	ENST00000345167		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
5CDS-intron	ENST00000355072	ENST00000503518		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
5CDS-intron	ENST00000355072	ENST00000442472		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
5CDS-intron	ENST00000355072	ENST00000509545		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-3CDS	ENST00000513806	ENST00000398051		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-3CDS	ENST00000513806	ENST00000398052		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-3CDS	ENST00000513806	ENST00000504933		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-3CDS	ENST00000513806	ENST00000345167		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-intron	ENST00000513806	ENST00000503518		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-intron	ENST00000513806	ENST00000442472		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
intron-intron	ENST00000513806	ENST00000509545		TCGA	LD	LIHC	TCGA-BC-A10R-01A	HTT	chr4	3127356	+	GRK4	chr4	3029639	+
Frame-shit	ENST00000327134	ENST00000314118		TCGA	LD	LIHC	TCGA-BC-A10R-01A	PAK2	chr3	196509704	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000327134	ENST00000421265		TCGA	LD	LIHC	TCGA-BC-A10R-01A	PAK2	chr3	196509704	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000327134	ENST00000541663		TCGA	LD	LIHC	TCGA-BC-A10R-01A	PAK2	chr3	196509704	+	PIGX	chr3	196460630	+
5CDS-intron	ENST00000327134	ENST00000495440		TCGA	LD	LIHC	TCGA-BC-A10R-01A	PAK2	chr3	196509704	+	PIGX	chr3	196460630	+
Frame-shit	ENST00000367928	ENST00000275227		TCGA	LD	LIHC	TCGA-BC-A10R-01A	VNN1	chr6	133032848	-	SLC18B1	chr6	133091475	-
5CDS-intron	ENST00000367928	ENST00000538764		TCGA	LD	LIHC	TCGA-BC-A10R-01A	VNN1	chr6	133032848	-	SLC18B1	chr6	133091475	-
5CDS-intron	ENST00000367928	ENST00000367918		TCGA	LD	LIHC	TCGA-BC-A10R-01A	VNN1	chr6	133032848	-	SLC18B1	chr6	133091475	-
5CDS-intron	ENST00000367928	ENST00000460518		TCGA	LD	LIHC	TCGA-BC-A10R-01A	VNN1	chr6	133032848	-	SLC18B1	chr6	133091475	-
intron-intron	ENST00000359206	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000359206	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000359206	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-5UTR	ENST00000359206	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000358400	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000358400	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000358400	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-5UTR	ENST00000358400	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000265723	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000265723	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000265723	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-5UTR	ENST00000265723	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000545634	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000545634	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000545634	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-5UTR	ENST00000545634	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000453593	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000453593	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-intron	ENST00000453593	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
intron-5UTR	ENST00000453593	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCB4	chr7	87076246	-	TMEM169	chr2	216946795	+
5CDS-3UTR	ENST00000370449	ENST00000482728		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
5CDS-intron	ENST00000370449	ENST00000307106		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
5CDS-intron	ENST00000370449	ENST00000477703		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
5CDS-intron	ENST00000370449	ENST00000476842		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-3UTR	ENST00000370434	ENST00000482728		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-intron	ENST00000370434	ENST00000307106		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-intron	ENST00000370434	ENST00000477703		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-intron	ENST00000370434	ENST00000476842		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-3UTR	ENST00000496621	ENST00000482728		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-intron	ENST00000496621	ENST00000307106		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-intron	ENST00000496621	ENST00000477703		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
intron-intron	ENST00000496621	ENST00000476842		TCGA	LD	LIHC	TCGA-BC-A10T-01A	ABCC2	chr10	101569975	+	SMIM4	chr3	52568819	+
Frame-shit	ENST00000265132	ENST00000395841		TCGA	LD	LIHC	TCGA-BC-A10T-01A	AMBP	chr9	116835205	-	RAE1	chr20	55948531	+
Frame-shit	ENST00000265132	ENST00000371242		TCGA	LD	LIHC	TCGA-BC-A10T-01A	AMBP	chr9	116835205	-	RAE1	chr20	55948531	+
Frame-shit	ENST00000265132	ENST00000527947		TCGA	LD	LIHC	TCGA-BC-A10T-01A	AMBP	chr9	116835205	-	RAE1	chr20	55948531	+
Frame-shit	ENST00000265132	ENST00000395840		TCGA	LD	LIHC	TCGA-BC-A10T-01A	AMBP	chr9	116835205	-	RAE1	chr20	55948531	+
5UTR-intron	ENST00000292852	ENST00000397063		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
5UTR-intron	ENST00000292852	ENST00000397062		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
5UTR-intron	ENST00000292852	ENST00000446151		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
5UTR-5UTR	ENST00000292852	ENST00000464747		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
5UTR-intron	ENST00000292852	ENST00000423513		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
intron-intron	ENST00000595329	ENST00000397063		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
intron-intron	ENST00000595329	ENST00000397062		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
intron-intron	ENST00000595329	ENST00000446151		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
intron-5UTR	ENST00000595329	ENST00000464747		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
intron-intron	ENST00000595329	ENST00000423513		TCGA	LD	LIHC	TCGA-BC-A10T-01A	FBXO17	chr19	39466226	-	NFE2L2	chr2	178203427	-
In-frame	ENST00000370647	ENST00000370664		TCGA	LD	LIHC	TCGA-BC-A10T-01A	HOGA1	chr10	99344671	+	UBTD1	chr10	99329895	+
In-frame	ENST00000370646	ENST00000370664		TCGA	LD	LIHC	TCGA-BC-A10T-01A	HOGA1	chr10	99344671	+	UBTD1	chr10	99329895	+
5CDS-intron	ENST00000303127	ENST00000302475		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000303127	ENST00000514701		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000303127	ENST00000515367		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000303127	ENST00000408903		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000515209	ENST00000302475		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000515209	ENST00000514701		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000515209	ENST00000515367		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
5CDS-intron	ENST00000515209	ENST00000408903		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
intron-intron	ENST00000506310	ENST00000302475		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
intron-intron	ENST00000506310	ENST00000514701		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
intron-intron	ENST00000506310	ENST00000515367		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
intron-intron	ENST00000506310	ENST00000408903		TCGA	LD	LIHC	TCGA-BC-A10T-01A	LMAN2	chr5	176761285	-	MCC	chr5	112783984	-
intron-3CDS	ENST00000397063	ENST00000509137		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000397063	ENST00000292853		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000397063	ENST00000600828		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
Frame-shit	ENST00000397062	ENST00000509137		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
Frame-shit	ENST00000397062	ENST00000292853		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
Frame-shit	ENST00000397062	ENST00000600828		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000446151	ENST00000509137		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000446151	ENST00000292853		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000446151	ENST00000600828		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000464747	ENST00000509137		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000464747	ENST00000292853		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000464747	ENST00000600828		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000423513	ENST00000509137		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000423513	ENST00000292853		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
intron-3CDS	ENST00000423513	ENST00000600828		TCGA	LD	LIHC	TCGA-BC-A10T-01A	NFE2L2	chr2	178129260	-	FBXO27	chr19	39521960	-
In-frame	ENST00000423118	ENST00000322989		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
In-frame	ENST00000423118	ENST00000563390		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000423118	ENST00000575669		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000423118	ENST00000576436		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000423118	ENST00000565420		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000423118	ENST00000569083		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
In-frame	ENST00000262304	ENST00000322989		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
In-frame	ENST00000262304	ENST00000563390		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000262304	ENST00000575669		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000262304	ENST00000576436		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000262304	ENST00000565420		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
5CDS-5UTR	ENST00000262304	ENST00000569083		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
intron-3CDS	ENST00000561991	ENST00000322989		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
intron-3CDS	ENST00000561991	ENST00000563390		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
intron-5UTR	ENST00000561991	ENST00000575669		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
intron-5UTR	ENST00000561991	ENST00000576436		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
intron-5UTR	ENST00000561991	ENST00000565420		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
intron-5UTR	ENST00000561991	ENST00000569083		TCGA	LD	LIHC	TCGA-BC-A10T-01A	PKD1	chr16	2185476	-	RPS15A	chr16	18796145	-
Frame-shit	ENST00000394752	ENST00000296051		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
Frame-shit	ENST00000394752	ENST00000460120		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
5CDS-intron	ENST00000394752	ENST00000494327		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
In-frame	ENST00000394750	ENST00000296051		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
In-frame	ENST00000394750	ENST00000460120		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
5CDS-intron	ENST00000394750	ENST00000494327		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
In-frame	ENST00000358080	ENST00000296051		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
In-frame	ENST00000358080	ENST00000460120		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
5CDS-intron	ENST00000358080	ENST00000494327		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
Frame-shit	ENST00000296295	ENST00000296051		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
Frame-shit	ENST00000296295	ENST00000460120		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
5CDS-intron	ENST00000296295	ENST00000494327		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
intron-3CDS	ENST00000470575	ENST00000296051		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
intron-3CDS	ENST00000470575	ENST00000460120		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
intron-intron	ENST00000470575	ENST00000494327		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SFMBT1	chr3	52966078	-	HPS3	chr3	148877833	+
In-frame	ENST00000262013	ENST00000338694		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000262013	ENST00000535086		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000505279	ENST00000338694		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000505279	ENST00000535086		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000357122	ENST00000338694		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000357122	ENST00000535086		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
intron-3CDS	ENST00000509724	ENST00000338694		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
intron-3CDS	ENST00000509724	ENST00000535086		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000510283	ENST00000338694		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000510283	ENST00000535086		TCGA	LD	LIHC	TCGA-BC-A10T-01A	SPAG9	chr17	49059887	-	TEKT1	chr17	6704264	-
In-frame	ENST00000394417	ENST00000233114		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000394417	ENST00000409908		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000394417	ENST00000409476		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000394417	ENST00000539945		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000394417	ENST00000544381		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000394417	ENST00000394423		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000394417	ENST00000462944		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
In-frame	ENST00000467648	ENST00000233114		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000467648	ENST00000409908		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000467648	ENST00000409476		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000467648	ENST00000539945		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000467648	ENST00000544381		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000467648	ENST00000394423		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000467648	ENST00000462944		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-3CDS	ENST00000487469	ENST00000233114		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-intron	ENST00000487469	ENST00000409908		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-intron	ENST00000487469	ENST00000409476		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-intron	ENST00000487469	ENST00000539945		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-5UTR	ENST00000487469	ENST00000544381		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-5UTR	ENST00000487469	ENST00000394423		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
intron-intron	ENST00000487469	ENST00000462944		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
In-frame	ENST00000337130	ENST00000233114		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000337130	ENST00000409908		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000337130	ENST00000409476		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000337130	ENST00000539945		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000337130	ENST00000544381		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000337130	ENST00000394423		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000337130	ENST00000462944		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
In-frame	ENST00000445915	ENST00000233114		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000445915	ENST00000409908		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000445915	ENST00000409476		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000445915	ENST00000539945		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000445915	ENST00000544381		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-5UTR	ENST00000445915	ENST00000394423		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000445915	ENST00000462944		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UGP2	chr2	64085070	+	MDH1	chr2	63821622	+
5CDS-intron	ENST00000349714	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
intron-intron	ENST00000359226	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5CDS-intron	ENST00000374384	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5CDS-intron	ENST00000374380	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5CDS-intron	ENST00000374385	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5CDS-intron	ENST00000374377	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5CDS-intron	ENST00000397556	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
intron-intron	ENST00000407996	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
intron-intron	ENST00000540457	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
intron-intron	ENST00000542501	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5CDS-intron	ENST00000397554	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
5UTR-intron	ENST00000491125	ENST00000430275		TCGA	LD	LIHC	TCGA-BC-A10T-01A	UQCC1	chr20	33954360	-	FER1L4	chr20	34167036	-
Frame-shit	ENST00000533244	ENST00000502692		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CCS	chr11	66368020	+	ACTN3	chr11	66321516	+
Frame-shit	ENST00000533244	ENST00000513398		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CCS	chr11	66368020	+	ACTN3	chr11	66321516	+
Frame-shit	ENST00000310190	ENST00000502692		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CCS	chr11	66368020	+	ACTN3	chr11	66321516	+
Frame-shit	ENST00000310190	ENST00000513398		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CCS	chr11	66368020	+	ACTN3	chr11	66321516	+
5CDS-intron	ENST00000222982	ENST00000483612		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000222982	ENST00000292401		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000222982	ENST00000411734		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000343703	ENST00000483612		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000343703	ENST00000292401		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000343703	ENST00000411734		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
3UTR-intron	ENST00000339843	ENST00000483612		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
3UTR-intron	ENST00000339843	ENST00000292401		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
3UTR-intron	ENST00000339843	ENST00000411734		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5UTR-intron	ENST00000480723	ENST00000483612		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5UTR-intron	ENST00000480723	ENST00000292401		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5UTR-intron	ENST00000480723	ENST00000411734		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000439761	ENST00000483612		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000439761	ENST00000292401		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
5CDS-intron	ENST00000439761	ENST00000411734		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	AZGP1	chr7	99569629	-
Frame-shit	ENST00000222982	ENST00000312891		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	GJC3	chr7	99521226	-
Frame-shit	ENST00000343703	ENST00000312891		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	GJC3	chr7	99521226	-
3UTR-3CDS	ENST00000339843	ENST00000312891		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	GJC3	chr7	99521226	-
5UTR-3CDS	ENST00000480723	ENST00000312891		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	GJC3	chr7	99521226	-
Frame-shit	ENST00000439761	ENST00000312891		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	CYP3A5	chr7	99273738	-	GJC3	chr7	99521226	-
5CDS-5UTR	ENST00000311907	ENST00000377317		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	F2	chr11	46745068	+	FOXH1	chr8	145701168	-
5CDS-5UTR	ENST00000311907	ENST00000525197		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	F2	chr11	46745068	+	FOXH1	chr8	145701168	-
5CDS-5UTR	ENST00000530231	ENST00000377317		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	F2	chr11	46745068	+	FOXH1	chr8	145701168	-
5CDS-5UTR	ENST00000530231	ENST00000525197		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	F2	chr11	46745068	+	FOXH1	chr8	145701168	-
5CDS-intron	ENST00000375431	ENST00000356501		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
5CDS-intron	ENST00000375431	ENST00000375418		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
intron-intron	ENST00000326039	ENST00000356501		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
intron-intron	ENST00000326039	ENST00000375418		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
5CDS-intron	ENST00000375430	ENST00000356501		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
5CDS-intron	ENST00000375430	ENST00000375418		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
5UTR-intron	ENST00000476439	ENST00000356501		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
5UTR-intron	ENST00000476439	ENST00000375418		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GRTP1	chr13	114018077	-	ADPRHL1	chr13	114055195	-
intron-intron	ENST00000455485	ENST00000398465		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GUSBP11	chr22	24059218	-	VPREB3	chr22	24095385	-
intron-intron	ENST00000455485	ENST00000248948		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	GUSBP11	chr22	24059218	-	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000401073	ENST00000594520		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	KIAA1522	chr1	33207790	+	GLUD1P2	chr10	48171409	-
intron-intron	ENST00000373481	ENST00000594520		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	KIAA1522	chr1	33207790	+	GLUD1P2	chr10	48171409	-
intron-intron	ENST00000294521	ENST00000594520		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	KIAA1522	chr1	33207790	+	GLUD1P2	chr10	48171409	-
intron-intron	ENST00000373480	ENST00000594520		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	KIAA1522	chr1	33207790	+	GLUD1P2	chr10	48171409	-
5CDS-5UTR	ENST00000261407	ENST00000446828		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-intron	ENST00000261407	ENST00000424227		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-intron	ENST00000261407	ENST00000443863		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-intron	ENST00000261407	ENST00000535426		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-intron	ENST00000261407	ENST00000265026		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-5UTR	ENST00000261407	ENST00000448876		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-5UTR	ENST00000261407	ENST00000454237		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-5UTR	ENST00000261407	ENST00000438798		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-5UTR	ENST00000535021	ENST00000446828		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-intron	ENST00000535021	ENST00000424227		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-intron	ENST00000535021	ENST00000443863		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-intron	ENST00000535021	ENST00000535426		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-intron	ENST00000535021	ENST00000265026		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-5UTR	ENST00000535021	ENST00000448876		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-5UTR	ENST00000535021	ENST00000454237		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
intron-5UTR	ENST00000535021	ENST00000438798		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	LPCAT3	chr12	7125578	-	MAP3K13	chr3	185003305	+
5CDS-intron	ENST00000404072	ENST00000357436		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000404072	ENST00000336738		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000404072	ENST00000442465		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000404072	ENST00000495174		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000404072	ENST00000599616		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
3UTR-intron	ENST00000468288	ENST00000357436		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
3UTR-intron	ENST00000468288	ENST00000336738		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
3UTR-intron	ENST00000468288	ENST00000442465		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
3UTR-intron	ENST00000468288	ENST00000495174		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
3UTR-intron	ENST00000468288	ENST00000599616		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000356976	ENST00000357436		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000356976	ENST00000336738		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000356976	ENST00000442465		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000356976	ENST00000495174		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
5CDS-intron	ENST00000356976	ENST00000599616		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PICK1	chr22	38453857	+	SH3BP1	chr22	38033622	+
3UTR-intron	ENST00000465917	ENST00000465812		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
3UTR-5UTR	ENST00000465917	ENST00000409052		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
3UTR-5UTR	ENST00000465917	ENST00000361779		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
3UTR-5UTR	ENST00000465917	ENST00000259206		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
3UTR-5UTR	ENST00000465917	ENST00000354115		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
3UTR-5UTR	ENST00000465917	ENST00000409930		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-intron	ENST00000245796	ENST00000465812		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000245796	ENST00000409052		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000245796	ENST00000361779		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000245796	ENST00000259206		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000245796	ENST00000354115		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000245796	ENST00000409930		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-intron	ENST00000441564	ENST00000465812		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000441564	ENST00000409052		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000441564	ENST00000361779		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000441564	ENST00000259206		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000441564	ENST00000354115		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000441564	ENST00000409930		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113885266	+
5UTR-5UTR	ENST00000369626	ENST00000555228		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-5UTR	ENST00000369626	ENST00000555661		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-3UTR	ENST00000369626	ENST00000553326		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-5UTR	ENST00000369626	ENST00000267568		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-intron	ENST00000369626	ENST00000553813		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-5UTR	ENST00000538576	ENST00000555228		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-5UTR	ENST00000538576	ENST00000555661		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-3UTR	ENST00000538576	ENST00000553326		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-5UTR	ENST00000538576	ENST00000267568		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-intron	ENST00000538576	ENST00000553813		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-5UTR	ENST00000433570	ENST00000555228		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-5UTR	ENST00000433570	ENST00000555661		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-3UTR	ENST00000433570	ENST00000553326		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-5UTR	ENST00000433570	ENST00000267568		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-intron	ENST00000433570	ENST00000553813		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-5UTR	ENST00000478835	ENST00000555228		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-5UTR	ENST00000478835	ENST00000555661		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-3UTR	ENST00000478835	ENST00000553326		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-5UTR	ENST00000478835	ENST00000267568		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
5UTR-intron	ENST00000478835	ENST00000553813		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC16A1	chr1	113498657	-	PTGR2	chr14	74325519	+
intron-3CDS	ENST00000454355	ENST00000267023		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000454355	ENST00000380198		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000454355	ENST00000341463		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000266980	ENST00000267023		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000266980	ENST00000380198		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000266980	ENST00000341463		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000419232	ENST00000267023		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000419232	ENST00000380198		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
intron-3CDS	ENST00000419232	ENST00000341463		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	SLC39A5	chr12	56624972	+	NABP2	chr12	56619232	+
5CDS-intron	ENST00000305533	ENST00000296490		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	TWF2	chr3	52269045	-	WDR82	chr3	52318607	-
5CDS-intron	ENST00000499914	ENST00000296490		TCGA	LD	LIHC	TCGA-BC-A10Y-01A	TWF2	chr3	52269045	-	WDR82	chr3	52318607	-
Frame-shit	ENST00000263401	ENST00000429927		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
Frame-shit	ENST00000263401	ENST00000307465		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
Frame-shit	ENST00000452374	ENST00000429927		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
Frame-shit	ENST00000452374	ENST00000307465		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
Frame-shit	ENST00000532705	ENST00000429927		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
Frame-shit	ENST00000532705	ENST00000307465		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
intron-3CDS	ENST00000533308	ENST00000429927		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
intron-3CDS	ENST00000533308	ENST00000307465		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	COMMD9	chr11	36310912	-	CDKL2	chr4	76507108	-
Frame-shit	ENST00000355151	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000355151	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
Frame-shit	ENST00000397496	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000397496	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
Frame-shit	ENST00000555345	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000555345	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
Frame-shit	ENST00000432849	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000432849	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
Frame-shit	ENST00000553711	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000553711	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-3CDS	ENST00000397505	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-intron	ENST00000397505	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-3CDS	ENST00000557221	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-intron	ENST00000557221	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-3CDS	ENST00000311892	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-intron	ENST00000311892	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
Frame-shit	ENST00000556840	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000556840	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-3CDS	ENST00000461594	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
intron-intron	ENST00000461594	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
Frame-shit	ENST00000555536	ENST00000246801		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5CDS-intron	ENST00000555536	ENST00000358830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	MRPL52	chr14	23302691	+	TSKS	chr19	50265489	-
5UTR-3CDS	ENST00000394752	ENST00000356770		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000394830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000296302		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000337303		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000410007		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000409057		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000409114		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000394752	ENST00000409767		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000356770		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000394830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000296302		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000337303		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000410007		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000409057		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000409114		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000394750	ENST00000409767		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000356770		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000394830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000296302		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000337303		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000410007		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000409057		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000409114		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000358080	ENST00000409767		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000356770		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000394830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000296302		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000337303		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000410007		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000409057		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000409114		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
5UTR-3CDS	ENST00000296295	ENST00000409767		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000356770		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000394830		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000296302		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000337303		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000410007		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000409057		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000409114		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
intron-3CDS	ENST00000470575	ENST00000409767		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SFMBT1	chr3	53079832	-	PBRM1	chr3	52623271	-
Frame-shit	ENST00000322652	ENST00000600324		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SUZ12	chr17	30310123	+	STAP2	chr19	4325542	-
Frame-shit	ENST00000322652	ENST00000594605		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SUZ12	chr17	30310123	+	STAP2	chr19	4325542	-
5CDS-5UTR	ENST00000322652	ENST00000597593		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SUZ12	chr17	30310123	+	STAP2	chr19	4325542	-
Frame-shit	ENST00000580398	ENST00000600324		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SUZ12	chr17	30310123	+	STAP2	chr19	4325542	-
Frame-shit	ENST00000580398	ENST00000594605		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SUZ12	chr17	30310123	+	STAP2	chr19	4325542	-
5CDS-5UTR	ENST00000580398	ENST00000597593		TCGA	LD	LIHC	TCGA-BC-A10Z-01A	SUZ12	chr17	30310123	+	STAP2	chr19	4325542	-
intron-3CDS	ENST00000245907	ENST00000414786		TCGA	LD	LIHC	TCGA-BC-A112-01A	C3	chr19	6717992	-	SHANK3	chr22	51143493	+
intron-3CDS	ENST00000245907	ENST00000445220		TCGA	LD	LIHC	TCGA-BC-A112-01A	C3	chr19	6717992	-	SHANK3	chr22	51143493	+
intron-3CDS	ENST00000245907	ENST00000262795		TCGA	LD	LIHC	TCGA-BC-A112-01A	C3	chr19	6717992	-	SHANK3	chr22	51143493	+
intron-3CDS	ENST00000599668	ENST00000414786		TCGA	LD	LIHC	TCGA-BC-A112-01A	C3	chr19	6717992	-	SHANK3	chr22	51143493	+
intron-3CDS	ENST00000599668	ENST00000445220		TCGA	LD	LIHC	TCGA-BC-A112-01A	C3	chr19	6717992	-	SHANK3	chr22	51143493	+
intron-3CDS	ENST00000599668	ENST00000262795		TCGA	LD	LIHC	TCGA-BC-A112-01A	C3	chr19	6717992	-	SHANK3	chr22	51143493	+
5UTR-3CDS	ENST00000317147	ENST00000373237		TCGA	LD	LIHC	TCGA-BC-A112-01A	CNOT1	chr16	58663632	-	PSMB2	chr1	36102033	-
5UTR-3CDS	ENST00000569240	ENST00000373237		TCGA	LD	LIHC	TCGA-BC-A112-01A	CNOT1	chr16	58663632	-	PSMB2	chr1	36102033	-
5UTR-3CDS	ENST00000441024	ENST00000373237		TCGA	LD	LIHC	TCGA-BC-A112-01A	CNOT1	chr16	58663632	-	PSMB2	chr1	36102033	-
intron-3CDS	ENST00000569732	ENST00000373237		TCGA	LD	LIHC	TCGA-BC-A112-01A	CNOT1	chr16	58663632	-	PSMB2	chr1	36102033	-
intron-3CDS	ENST00000245138	ENST00000373237		TCGA	LD	LIHC	TCGA-BC-A112-01A	CNOT1	chr16	58663632	-	PSMB2	chr1	36102033	-
In-frame	ENST00000373237	ENST00000413817		TCGA	LD	LIHC	TCGA-BC-A112-01A	PSMB2	chr1	36096875	-	DENND6B	chr22	50750846	-
Frame-shit	ENST00000371671	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000371671	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
Frame-shit	ENST00000371663	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000371663	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
Frame-shit	ENST00000311502	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000311502	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
Frame-shit	ENST00000357466	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000357466	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
Frame-shit	ENST00000432842	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
5CDS-intron	ENST00000432842	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
intron-3CDS	ENST00000371675	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
intron-intron	ENST00000371675	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
intron-3CDS	ENST00000466096	ENST00000371692		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
intron-intron	ENST00000466096	ENST00000371691		TCGA	LD	LIHC	TCGA-BC-A112-01A	RABL6	chr9	139718111	+	FAM69B	chr9	139612029	+
intron-3CDS	ENST00000361654	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000361654	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000361654	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000545889	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000545889	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000545889	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000302528	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000302528	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000302528	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000358808	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000358808	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000358808	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000537178	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000537178	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000537178	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540338	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540338	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000540338	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000536634	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000536634	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000536634	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540539	ENST00000331738		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000540539	ENST00000354654		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-intron	ENST00000540539	ENST00000392442		TCGA	LD	LIHC	TCGA-BC-A216-01A	CLIP1	chr12	122884328	-	RSRC2	chr12	122999774	-
intron-3CDS	ENST00000323786	ENST00000338779		TCGA	LD	LIHC	TCGA-BC-A216-01A	COG4	chr16	70514632	-	MTSS1L	chr16	70698079	-
intron-3CDS	ENST00000393612	ENST00000338779		TCGA	LD	LIHC	TCGA-BC-A216-01A	COG4	chr16	70514632	-	MTSS1L	chr16	70698079	-
intron-3CDS	ENST00000564653	ENST00000338779		TCGA	LD	LIHC	TCGA-BC-A216-01A	COG4	chr16	70514632	-	MTSS1L	chr16	70698079	-
5CDS-5UTR	ENST00000585892	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000585892	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000585892	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000585892	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000585892	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000585892	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-5UTR	ENST00000314646	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000314646	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000314646	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000314646	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000314646	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000314646	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-5UTR	ENST00000359692	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000359692	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000359692	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000359692	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000359692	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000359692	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-5UTR	ENST00000389253	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000389253	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000389253	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000389253	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000389253	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000389253	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-5UTR	ENST00000355667	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000355667	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000355667	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000355667	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000355667	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000355667	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-5UTR	ENST00000408974	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000408974	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000408974	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000408974	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000408974	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000408974	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
intron-5UTR	ENST00000591819	ENST00000592685		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
intron-intron	ENST00000591819	ENST00000380702		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
intron-intron	ENST00000591819	ENST00000352831		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
intron-intron	ENST00000591819	ENST00000293683		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
intron-intron	ENST00000591819	ENST00000440014		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
intron-intron	ENST00000591819	ENST00000344979		TCGA	LD	LIHC	TCGA-BC-A216-01A	DNM2	chr19	10870487	+	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000263734	ENST00000449601		TCGA	LD	LIHC	TCGA-BC-A216-01A	EPAS1	chr2	46605906	+	TMEM247	chr2	46707544	+
5CDS-intron	ENST00000263734	ENST00000434431		TCGA	LD	LIHC	TCGA-BC-A216-01A	EPAS1	chr2	46605906	+	TMEM247	chr2	46707544	+
intron-intron	ENST00000467888	ENST00000449601		TCGA	LD	LIHC	TCGA-BC-A216-01A	EPAS1	chr2	46605906	+	TMEM247	chr2	46707544	+
intron-intron	ENST00000467888	ENST00000434431		TCGA	LD	LIHC	TCGA-BC-A216-01A	EPAS1	chr2	46605906	+	TMEM247	chr2	46707544	+
5CDS-5UTR	ENST00000380502	ENST00000494753		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000411567		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000276914		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000380465		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
5CDS-intron	ENST00000380502	ENST00000380464		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
intron-5UTR	ENST00000380496	ENST00000494753		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000380496	ENST00000411567		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000380496	ENST00000276914		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000380496	ENST00000380465		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
intron-intron	ENST00000380496	ENST00000380464		TCGA	LD	LIHC	TCGA-BC-A216-01A	HAUS6	chr9	19094315	-	PLIN2	chr9	19131269	-
intron-3CDS	ENST00000448662	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000448662	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000448662	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000431808	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000431808	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000431808	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000284776	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000284776	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000284776	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000437304	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000437304	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000437304	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000319471	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000319471	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000319471	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
5UTR-3CDS	ENST00000449407	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
5UTR-3CDS	ENST00000449407	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
5UTR-3CDS	ENST00000449407	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000355634	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000355634	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000355634	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
5UTR-3CDS	ENST00000393528	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
5UTR-3CDS	ENST00000393528	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
5UTR-3CDS	ENST00000393528	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000418609	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000418609	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000418609	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000498125	ENST00000337318		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000498125	ENST00000392754		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
intron-3CDS	ENST00000498125	ENST00000280780		TCGA	LD	LIHC	TCGA-BC-A216-01A	SORBS2	chr4	186732818	-	FAM53B	chr10	126384781	-
Frame-shit	ENST00000403766	ENST00000376355		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000403766	ENST00000444838		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000403766	ENST00000376360		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000403766	ENST00000376354		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000403766	ENST00000339105		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376440	ENST00000376355		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376440	ENST00000444838		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376440	ENST00000376360		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376440	ENST00000376354		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000376440	ENST00000339105		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
3UTR-3CDS	ENST00000460562	ENST00000376355		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
3UTR-3CDS	ENST00000460562	ENST00000444838		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
3UTR-3CDS	ENST00000460562	ENST00000376360		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
3UTR-3CDS	ENST00000460562	ENST00000376354		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
3UTR-3CDS	ENST00000460562	ENST00000339105		TCGA	LD	LIHC	TCGA-BC-A216-01A	UBAC2	chr13	99970323	+	CLYBL	chr13	100425078	+
Frame-shit	ENST00000369426	ENST00000369406		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000369426	ENST00000544913		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000369426	ENST00000476640		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000235521	ENST00000369406		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000235521	ENST00000544913		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000235521	ENST00000476640		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000537870	ENST00000369406		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000537870	ENST00000544913		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
Frame-shit	ENST00000537870	ENST00000476640		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
intron-3CDS	ENST00000497761	ENST00000369406		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
intron-3CDS	ENST00000497761	ENST00000544913		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
intron-3CDS	ENST00000497761	ENST00000476640		TCGA	LD	LIHC	TCGA-BC-A216-01A	WARS2	chr1	119584887	-	HMGCS2	chr1	120307249	-
In-frame	ENST00000262144	ENST00000453594		TCGA	LD	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	PTGES3L	chr17	41123713	-
In-frame	ENST00000262144	ENST00000409446		TCGA	LD	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	PTGES3L	chr17	41123713	-
intron-3CDS	ENST00000562331	ENST00000453594		TCGA	LD	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	PTGES3L	chr17	41123713	-
intron-3CDS	ENST00000562331	ENST00000409446		TCGA	LD	LIHC	TCGA-BC-A216-01A	WDR59	chr16	75018862	-	PTGES3L	chr17	41123713	-
In-frame	ENST00000388995	ENST00000355832		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
In-frame	ENST00000388995	ENST00000542458		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
5CDS-5UTR	ENST00000388995	ENST00000465653		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
Frame-shit	ENST00000585154	ENST00000355832		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
Frame-shit	ENST00000585154	ENST00000542458		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
5CDS-5UTR	ENST00000585154	ENST00000465653		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
Frame-shit	ENST00000345041	ENST00000355832		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
Frame-shit	ENST00000345041	ENST00000542458		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
5CDS-5UTR	ENST00000345041	ENST00000465653		TCGA	LD	LIHC	TCGA-BC-A217-01A	FAM83G	chr17	18891560	-	ERCC6	chr10	50669602	-
In-frame	ENST00000328965	ENST00000227665		TCGA	LD	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116662608	-
5CDS-5UTR	ENST00000328965	ENST00000542499		TCGA	LD	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116662608	-
5UTR-3CDS	ENST00000531220	ENST00000227665		TCGA	LD	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116662608	-
5UTR-5UTR	ENST00000531220	ENST00000542499		TCGA	LD	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116662608	-
intron-3CDS	ENST00000534735	ENST00000227665		TCGA	LD	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116662608	-
intron-5UTR	ENST00000534735	ENST00000542499		TCGA	LD	LIHC	TCGA-BC-A217-01A	OAF	chr11	120082218	+	APOA5	chr11	116662608	-
In-frame	ENST00000425690	ENST00000402988		TCGA	LD	LIHC	TCGA-BC-A217-01A	PVR	chr19	45157286	+	IGSF23	chr19	45127004	+
In-frame	ENST00000344956	ENST00000402988		TCGA	LD	LIHC	TCGA-BC-A217-01A	PVR	chr19	45157286	+	IGSF23	chr19	45127004	+
In-frame	ENST00000403059	ENST00000402988		TCGA	LD	LIHC	TCGA-BC-A217-01A	PVR	chr19	45157286	+	IGSF23	chr19	45127004	+
In-frame	ENST00000406449	ENST00000402988		TCGA	LD	LIHC	TCGA-BC-A217-01A	PVR	chr19	45157286	+	IGSF23	chr19	45127004	+
5UTR-5UTR	ENST00000334708	ENST00000556881		TCGA	LD	LIHC	TCGA-BC-A217-01A	SERPINA11	chr14	94919066	-	SERPINA12	chr14	94964767	-
5UTR-intron	ENST00000334708	ENST00000341228		TCGA	LD	LIHC	TCGA-BC-A217-01A	SERPINA11	chr14	94919066	-	SERPINA12	chr14	94964767	-
intron-intron	ENST00000341846	ENST00000269383		TCGA	LD	LIHC	TCGA-BC-A217-01A	TRIM29	chr11	120055918	-	TRIM65	chr17	73876710	-
intron-intron	ENST00000524816	ENST00000269383		TCGA	LD	LIHC	TCGA-BC-A217-01A	TRIM29	chr11	120055918	-	TRIM65	chr17	73876710	-
intron-intron	ENST00000541857	ENST00000269383		TCGA	LD	LIHC	TCGA-BC-A217-01A	TRIM29	chr11	120055918	-	TRIM65	chr17	73876710	-
intron-intron	ENST00000525887	ENST00000269383		TCGA	LD	LIHC	TCGA-BC-A217-01A	TRIM29	chr11	120055918	-	TRIM65	chr17	73876710	-
intron-intron	ENST00000528870	ENST00000269383		TCGA	LD	LIHC	TCGA-BC-A217-01A	TRIM29	chr11	120055918	-	TRIM65	chr17	73876710	-
intron-intron	ENST00000529044	ENST00000269383		TCGA	LD	LIHC	TCGA-BC-A217-01A	TRIM29	chr11	120055918	-	TRIM65	chr17	73876710	-
5UTR-3UTR	ENST00000268712	ENST00000339368		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000268712	ENST00000509152		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000268712	ENST00000526473		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395851	ENST00000339368		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395851	ENST00000509152		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395851	ENST00000526473		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395857	ENST00000339368		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395857	ENST00000509152		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395857	ENST00000526473		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395848	ENST00000339368		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395848	ENST00000509152		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000395848	ENST00000526473		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000583226	ENST00000339368		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000583226	ENST00000509152		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000583226	ENST00000526473		TCGA	LD	LIHC	TCGA-BC-A3KF-01A	NCOR1	chr17	16118676	-	ZNF595	chr4	59323	+
In-frame	ENST00000554411	ENST00000371953		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
5CDS-intron	ENST00000554411	ENST00000472832		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
Frame-shit	ENST00000336557	ENST00000371953		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
5CDS-intron	ENST00000336557	ENST00000472832		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
In-frame	ENST00000258807	ENST00000371953		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
5CDS-intron	ENST00000258807	ENST00000472832		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
intron-3CDS	ENST00000555817	ENST00000371953		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
intron-intron	ENST00000555817	ENST00000472832		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CIDEB	chr14	24775580	-	PTEN	chr10	89711875	+
Frame-shit	ENST00000334194	ENST00000331204		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CYP4Z1	chr1	47534435	+	ALYREF	chr17	79848696	-
Frame-shit	ENST00000334194	ENST00000505490		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CYP4Z1	chr1	47534435	+	ALYREF	chr17	79848696	-
5CDS-5UTR	ENST00000334194	ENST00000512673		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CYP4Z1	chr1	47534435	+	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000471598	ENST00000331204		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CYP4Z1	chr1	47534435	+	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000471598	ENST00000505490		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CYP4Z1	chr1	47534435	+	ALYREF	chr17	79848696	-
intron-5UTR	ENST00000471598	ENST00000512673		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	CYP4Z1	chr1	47534435	+	ALYREF	chr17	79848696	-
intron-intron	ENST00000348367	ENST00000369717		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000348367	ENST00000369716		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000348367	ENST00000241356		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-5UTR	ENST00000348367	ENST00000486342		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000423155	ENST00000369717		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000423155	ENST00000369716		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000423155	ENST00000241356		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-5UTR	ENST00000423155	ENST00000486342		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000369425	ENST00000369717		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000369425	ENST00000369716		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-intron	ENST00000369425	ENST00000241356		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
intron-5UTR	ENST00000369425	ENST00000486342		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
5UTR-intron	ENST00000480130	ENST00000369717		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
5UTR-intron	ENST00000480130	ENST00000369716		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
5UTR-intron	ENST00000480130	ENST00000241356		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
5UTR-5UTR	ENST00000480130	ENST00000486342		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	GPAM	chr10	113974926	-	ADORA3	chr1	112043178	-
5CDS-intron	ENST00000264832	ENST00000397493		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
5CDS-3UTR	ENST00000264832	ENST00000327423		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
5CDS-3UTR	ENST00000264832	ENST00000434485		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
5CDS-intron	ENST00000264832	ENST00000461722		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-intron	ENST00000423829	ENST00000397493		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-3UTR	ENST00000423829	ENST00000327423		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-3UTR	ENST00000423829	ENST00000434485		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-intron	ENST00000423829	ENST00000461722		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-intron	ENST00000585443	ENST00000397493		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-3UTR	ENST00000585443	ENST00000327423		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-3UTR	ENST00000585443	ENST00000434485		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
intron-intron	ENST00000585443	ENST00000461722		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	ICAM1	chr19	10385704	+	PRR14L	chr22	32080375	-
5CDS-3UTR	ENST00000331134	ENST00000546128		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000331134	ENST00000371923		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000331134	ENST00000271153		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000331134	ENST00000371919		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000331134	ENST00000452782		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-3UTR	ENST00000374747	ENST00000546128		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000374747	ENST00000371923		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000374747	ENST00000271153		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000374747	ENST00000371919		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5CDS-intron	ENST00000374747	ENST00000452782		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-3UTR	ENST00000539314	ENST00000546128		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000539314	ENST00000371923		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000539314	ENST00000271153		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000539314	ENST00000371919		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000539314	ENST00000452782		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-3UTR	ENST00000572760	ENST00000546128		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000572760	ENST00000371923		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000572760	ENST00000271153		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000572760	ENST00000371919		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000572760	ENST00000452782		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-3UTR	ENST00000573876	ENST00000546128		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000573876	ENST00000371923		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000573876	ENST00000271153		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000573876	ENST00000371919		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
intron-intron	ENST00000573876	ENST00000452782		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-3UTR	ENST00000574344	ENST00000546128		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000574344	ENST00000371923		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000574344	ENST00000271153		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000574344	ENST00000371919		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
5UTR-intron	ENST00000574344	ENST00000452782		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	NPLOC4	chr17	79580344	-	CYP4B1	chr1	47230650	+
In-frame	ENST00000359139	ENST00000393408		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000359139	ENST00000225603		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000359139	ENST00000495350		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000395741	ENST00000393408		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000395741	ENST00000225603		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000395741	ENST00000495350		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000395744	ENST00000393408		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000395744	ENST00000225603		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000395744	ENST00000495350		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000216061	ENST00000393408		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000216061	ENST00000225603		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000216061	ENST00000495350		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	PPP6R2	chr22	50845304	+	CBX1	chr17	46152462	-
In-frame	ENST00000254605	ENST00000299492		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000254605	ENST00000533792		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000254605	ENST00000528883		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000254605	ENST00000530181		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
5CDS-3UTR	ENST00000254605	ENST00000530582		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000534343	ENST00000299492		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000534343	ENST00000533792		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000534343	ENST00000528883		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
In-frame	ENST00000534343	ENST00000530181		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
5CDS-3UTR	ENST00000534343	ENST00000530582		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	RRP8	chr11	6624634	-	PPFIBP2	chr11	7660963	+
Frame-shit	ENST00000262878	ENST00000373664		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SAMHD1	chr20	35575141	-	RBL1	chr20	35635962	-
Frame-shit	ENST00000262878	ENST00000344359		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SAMHD1	chr20	35575141	-	RBL1	chr20	35635962	-
5CDS-intron	ENST00000262878	ENST00000598590		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SAMHD1	chr20	35575141	-	RBL1	chr20	35635962	-
5UTR-3CDS	ENST00000373694	ENST00000373664		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SAMHD1	chr20	35575141	-	RBL1	chr20	35635962	-
5UTR-3CDS	ENST00000373694	ENST00000344359		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SAMHD1	chr20	35575141	-	RBL1	chr20	35635962	-
5UTR-intron	ENST00000373694	ENST00000598590		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SAMHD1	chr20	35575141	-	RBL1	chr20	35635962	-
5UTR-3CDS	ENST00000360239	ENST00000299134		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SSH1	chr12	109246414	-	SVOP	chr12	109354823	-
Frame-shit	ENST00000326495	ENST00000299134		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SSH1	chr12	109246414	-	SVOP	chr12	109354823	-
Frame-shit	ENST00000551165	ENST00000299134		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SSH1	chr12	109246414	-	SVOP	chr12	109354823	-
intron-3CDS	ENST00000326470	ENST00000299134		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SSH1	chr12	109246414	-	SVOP	chr12	109354823	-
intron-3CDS	ENST00000546812	ENST00000299134		TCGA	LD	LIHC	TCGA-BC-A3KG-01A	SSH1	chr12	109246414	-	SVOP	chr12	109354823	-
intron-5UTR	ENST00000500728	ENST00000264771		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-intron	ENST00000500728	ENST00000515740		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-intron	ENST00000500728	ENST00000508204		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-intron	ENST00000500728	ENST00000504180		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-5UTR	ENST00000296325	ENST00000264771		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-intron	ENST00000296325	ENST00000515740		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-intron	ENST00000296325	ENST00000508204		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
intron-intron	ENST00000296325	ENST00000504180		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	LRPAP1	chr4	3510912	-	TMEM175	chr4	941497	+
5CDS-intron	ENST00000276893	ENST00000371799		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000277415		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000252854		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000371801		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000371796		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000392991		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000276893	ENST00000371793		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371799		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000277415		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000252854		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371801		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371796		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000392991		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5CDS-intron	ENST00000381373	ENST00000371793		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371799		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000277415		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000252854		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371801		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371796		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000392991		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
intron-intron	ENST00000485617	ENST00000371793		TCGA	LD	LIHC	TCGA-BC-A5W4-01A	UHRF2	chr9	6421142	+	OLFM1	chr9	137987710	+
5UTR-3CDS	ENST00000383737	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
5UTR-3CDS	ENST00000395734	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
5UTR-3CDS	ENST00000426837	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
5UTR-3CDS	ENST00000360240	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
5UTR-3CDS	ENST00000439356	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000264724	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000420772	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000441748	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000462206	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000434267	ENST00000607778		TCGA	LD	LIHC	TCGA-BC-A69H-01A	MAP4	chr3	48130263	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000371711	ENST00000569210		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	B4GALT5	chr20	48314735	-	RNF151	chr16	2017275	+
intron-3CDS	ENST00000371711	ENST00000569714		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	B4GALT5	chr20	48314735	-	RNF151	chr16	2017275	+
intron-3CDS	ENST00000371711	ENST00000321392		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	B4GALT5	chr20	48314735	-	RNF151	chr16	2017275	+
Frame-shit	ENST00000339022	ENST00000394036		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000339022	ENST00000394045		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000339022	ENST00000348459		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000339022	ENST00000371332		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000339022	ENST00000239026		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000339022	ENST00000394044		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-intron	ENST00000339022	ENST00000462057		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000285979	ENST00000394036		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000285979	ENST00000394045		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000285979	ENST00000348459		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
Frame-shit	ENST00000285979	ENST00000371332		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000285979	ENST00000239026		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-3UTR	ENST00000285979	ENST00000394044		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-intron	ENST00000285979	ENST00000462057		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	CYP2C18	chr10	96493195	+	HELLS	chr10	96331145	+
5CDS-5UTR	ENST00000537442	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000537442	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000537442	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000382421	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000382421	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000382421	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000545200	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000545200	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000545200	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000399466	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000399466	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000399466	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000322166	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000322166	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000322166	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000541778	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000541778	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000541778	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000542015	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000542015	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5UTR-5UTR	ENST00000542015	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000545915	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000545915	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000545915	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000540228	ENST00000540656		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000540228	ENST00000320591		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-5UTR	ENST00000540228	ENST00000534837		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	NOP2	chr12	6676982	-	PIANP	chr12	6807270	-
5CDS-intron	ENST00000220514	ENST00000299092		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	OIP5	chr15	41605471	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000220514	ENST00000561100		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	OIP5	chr15	41605471	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000220514	ENST00000543580		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	OIP5	chr15	41605471	-	GPR176	chr15	40099459	-
5CDS-5UTR	ENST00000220514	ENST00000560729		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	OIP5	chr15	41605471	-	GPR176	chr15	40099459	-
In-frame	ENST00000406610	ENST00000404488		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000406610	ENST00000328268		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000406610	ENST00000403427		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000406610	ENST00000407217		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
5CDS-intron	ENST00000406610	ENST00000444954		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000462231	ENST00000404488		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000462231	ENST00000328268		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000462231	ENST00000403427		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000462231	ENST00000407217		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
5CDS-intron	ENST00000462231	ENST00000444954		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000349953	ENST00000404488		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000349953	ENST00000328268		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000349953	ENST00000403427		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000349953	ENST00000407217		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
5CDS-intron	ENST00000349953	ENST00000444954		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000358768	ENST00000404488		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000358768	ENST00000328268		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000358768	ENST00000403427		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000358768	ENST00000407217		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
5CDS-intron	ENST00000358768	ENST00000444954		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000351153	ENST00000404488		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000351153	ENST00000328268		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000351153	ENST00000403427		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
In-frame	ENST00000351153	ENST00000407217		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
5CDS-intron	ENST00000351153	ENST00000444954		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
intron-3CDS	ENST00000488622	ENST00000404488		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
intron-3CDS	ENST00000488622	ENST00000328268		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
intron-3CDS	ENST00000488622	ENST00000403427		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
intron-3CDS	ENST00000488622	ENST00000407217		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
intron-intron	ENST00000488622	ENST00000444954		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	PARD3B	chr2	205551005	+	CRELD2	chr22	50312878	+
5CDS-intron	ENST00000261973	ENST00000358377		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000261973	ENST00000353777		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000261973	ENST00000394234		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000261973	ENST00000509153		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000261973	ENST00000555042		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000261973	ENST00000510612		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000261973	ENST00000553457		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000358377		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000353777		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000394234		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000509153		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000555042		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000510612		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000540173	ENST00000553457		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000358377		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000353777		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000394234		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000509153		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000555042		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000510612		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5CDS-intron	ENST00000527432	ENST00000553457		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000358377		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000353777		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000394234		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000509153		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000555042		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000510612		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000525321	ENST00000553457		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000358377		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000353777		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000394234		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000509153		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000555042		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000510612		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000526754	ENST00000553457		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000358377		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000353777		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000394234		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000509153		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000555042		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000510612		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
intron-intron	ENST00000532483	ENST00000553457		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	RBM25	chr14	73572746	+	DCAF4	chr14	73425182	+
5UTR-3CDS	ENST00000359511	ENST00000510514		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000359511	ENST00000555236		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000359511	ENST00000434623		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000359511	ENST00000374525		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000359511	ENST00000259318		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-intron	ENST00000359511	ENST00000482335		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000510514		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000555236		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000434623		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000374525		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-3CDS	ENST00000423538	ENST00000259318		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5UTR-intron	ENST00000423538	ENST00000482335		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000510514		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000555236		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000434623		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000374525		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
intron-3CDS	ENST00000469537	ENST00000259318		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
intron-intron	ENST00000469537	ENST00000482335		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	SLC25A44	chr1	156164038	+	AKAP2	chr9	112918599	+
5CDS-5UTR	ENST00000392133	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392133	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392133	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392133	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392132	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392132	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392132	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
5CDS-5UTR	ENST00000392132	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
intron-5UTR	ENST00000471649	ENST00000454545		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
intron-5UTR	ENST00000471649	ENST00000437356		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
intron-5UTR	ENST00000471649	ENST00000295658		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
intron-5UTR	ENST00000471649	ENST00000406027		TCGA	LD	LIHC	TCGA-BC-A8YO-01A	XRCC5	chr2	217012999	+	TMEM169	chr2	216960561	+
Frame-shit	ENST00000262370	ENST00000444310		TCGA	LD	LIHC	TCGA-BD-A2L6-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000415496	ENST00000444310		TCGA	LD	LIHC	TCGA-BD-A2L6-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000399577	ENST00000444310		TCGA	LD	LIHC	TCGA-BD-A2L6-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000588994	ENST00000444310		TCGA	LD	LIHC	TCGA-BD-A2L6-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000586183	ENST00000444310		TCGA	LD	LIHC	TCGA-BD-A2L6-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
intron-3CDS	ENST00000588015	ENST00000444310		TCGA	LD	LIHC	TCGA-BD-A2L6-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000404648	ENST00000570083		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000404648	ENST00000355906		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000404648	ENST00000398131		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000404648	ENST00000569639		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000404648	ENST00000357763		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000404648	ENST00000562526		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000404648	ENST00000565574		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
Frame-shit	ENST00000405164	ENST00000570083		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000405164	ENST00000355906		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000405164	ENST00000398131		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000405164	ENST00000569639		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000405164	ENST00000357763		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000405164	ENST00000562526		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000405164	ENST00000565574		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
Frame-shit	ENST00000336098	ENST00000570083		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000336098	ENST00000355906		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000336098	ENST00000398131		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000336098	ENST00000569639		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000336098	ENST00000357763		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000336098	ENST00000562526		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000336098	ENST00000565574		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
Frame-shit	ENST00000407946	ENST00000570083		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000407946	ENST00000355906		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
In-frame	ENST00000407946	ENST00000398131		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000407946	ENST00000569639		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000407946	ENST00000357763		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000407946	ENST00000562526		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
5CDS-intron	ENST00000407946	ENST00000565574		TCGA	LD	LIHC	TCGA-BD-A3ER-01A	FGG	chr4	155527857	-	HP	chr16	72094131	+
intron-3CDS	ENST00000482639	ENST00000305366		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	CPHL1P	chr3	148966809	-	TM4SF1	chr3	149089654	-
intron-3CDS	ENST00000482639	ENST00000472441		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	CPHL1P	chr3	148966809	-	TM4SF1	chr3	149089654	-
intron-3CDS	ENST00000360772	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000360772	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000360772	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000360772	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000359169	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000359169	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000359169	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000359169	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000360304	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000360304	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000360304	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000360304	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000418370	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000418370	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000418370	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000418370	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000578202	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000578202	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000578202	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000578202	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000354792	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000354792	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000354792	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000354792	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000346322	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000346322	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000346322	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000346322	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000583087	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000583087	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000583087	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000583087	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000475616	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000475616	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000475616	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000475616	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3CDS	ENST00000510775	ENST00000279263		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000510775	ENST00000540748		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-5UTR	ENST00000510775	ENST00000345348		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
intron-3UTR	ENST00000510775	ENST00000531029		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	MYLK	chr3	123518680	-	TM7SF2	chr11	64880692	+
Frame-shit	ENST00000371464	ENST00000370818		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
Frame-shit	ENST00000371464	ENST00000394299		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
In-frame	ENST00000371464	ENST00000543339		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
In-frame	ENST00000371467	ENST00000370818		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
In-frame	ENST00000371467	ENST00000394299		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
Frame-shit	ENST00000371467	ENST00000543339		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
In-frame	ENST00000371469	ENST00000370818		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
In-frame	ENST00000371469	ENST00000394299		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
Frame-shit	ENST00000371469	ENST00000543339		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	RBP4	chr10	95360150	-	GPC3	chrX	132670321	-
5UTR-5UTR	ENST00000360647	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000360647	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000360647	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3UTR	ENST00000360647	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000360647	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000360647	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-intron	ENST00000360647	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000468369	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000468369	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000468369	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3UTR	ENST00000468369	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000468369	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000468369	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-intron	ENST00000468369	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000484491	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000484491	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000484491	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3UTR	ENST00000484491	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000484491	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000484491	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-intron	ENST00000484491	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000544464	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000544464	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000544464	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3UTR	ENST00000544464	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000544464	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000544464	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-intron	ENST00000544464	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000492394	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000492394	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000492394	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3UTR	ENST00000492394	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000492394	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000492394	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-intron	ENST00000492394	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000485866	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000485866	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000485866	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3UTR	ENST00000485866	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000485866	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-5UTR	ENST00000485866	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-intron	ENST00000485866	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-5UTR	ENST00000497929	ENST00000374514		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-5UTR	ENST00000497929	ENST00000400061		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-5UTR	ENST00000497929	ENST00000374505		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-3UTR	ENST00000497929	ENST00000495365		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-5UTR	ENST00000497929	ENST00000374503		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-5UTR	ENST00000497929	ENST00000374502		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
intron-intron	ENST00000497929	ENST00000374501		TCGA	LD	LIHC	TCGA-BW-A5NO-01A	ZNF148	chr3	125093946	-	LYPLA2	chr1	24119147	+
5UTR-3CDS	ENST00000393593	ENST00000296741		TCGA	LD	LIHC	TCGA-BW-A5NP-01A	IRF2	chr4	185395533	-	ENPP6	chr4	185033962	-
5UTR-3CDS	ENST00000512020	ENST00000296741		TCGA	LD	LIHC	TCGA-BW-A5NP-01A	IRF2	chr4	185395533	-	ENPP6	chr4	185033962	-
intron-3UTR	ENST00000426361	ENST00000371497		TCGA	LD	LIHC	TCGA-BW-A5NP-01A	ZNF252P	chr8	146219865	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000426361	ENST00000603338		TCGA	LD	LIHC	TCGA-BW-A5NP-01A	ZNF252P	chr8	146219865	-	TSHZ2	chr20	52103683	+
intron-intron	ENST00000426361	ENST00000329613		TCGA	LD	LIHC	TCGA-BW-A5NP-01A	ZNF252P	chr8	146219865	-	TSHZ2	chr20	52103683	+
In-frame	ENST00000358823	ENST00000376223		TCGA	LD	LIHC	TCGA-CC-5258-01A	CAMSAP2	chr1	200730226	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000358823	ENST00000482265		TCGA	LD	LIHC	TCGA-CC-5258-01A	CAMSAP2	chr1	200730226	+	DHRS3	chr1	12640694	-
In-frame	ENST00000413307	ENST00000376223		TCGA	LD	LIHC	TCGA-CC-5258-01A	CAMSAP2	chr1	200730226	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000413307	ENST00000482265		TCGA	LD	LIHC	TCGA-CC-5258-01A	CAMSAP2	chr1	200730226	+	DHRS3	chr1	12640694	-
In-frame	ENST00000236925	ENST00000376223		TCGA	LD	LIHC	TCGA-CC-5258-01A	CAMSAP2	chr1	200730226	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000236925	ENST00000482265		TCGA	LD	LIHC	TCGA-CC-5258-01A	CAMSAP2	chr1	200730226	+	DHRS3	chr1	12640694	-
Frame-shit	ENST00000446828	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000446828	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000446828	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000446828	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
Frame-shit	ENST00000424227	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000424227	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000424227	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000424227	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
Frame-shit	ENST00000443863	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000443863	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000443863	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000443863	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
Frame-shit	ENST00000535426	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000535426	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000535426	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000535426	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
Frame-shit	ENST00000265026	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000265026	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000265026	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000265026	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000448876	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000448876	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000448876	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000448876	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000454237	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000454237	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000454237	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000454237	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000438798	ENST00000320895		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000438798	ENST00000507807		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000438798	ENST00000320927		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000438798	ENST00000506641		TCGA	LD	LIHC	TCGA-CC-5258-01A	MAP3K13	chr3	185191549	+	CLPTM1L	chr5	1341975	-
In-frame	ENST00000449802	ENST00000356079		TCGA	LD	LIHC	TCGA-CC-5258-01A	NBEAL1	chr2	203975005	+	CYP20A1	chr2	204131237	+
5CDS-3UTR	ENST00000449802	ENST00000461371		TCGA	LD	LIHC	TCGA-CC-5258-01A	NBEAL1	chr2	203975005	+	CYP20A1	chr2	204131237	+
5CDS-3UTR	ENST00000449802	ENST00000429815		TCGA	LD	LIHC	TCGA-CC-5258-01A	NBEAL1	chr2	203975005	+	CYP20A1	chr2	204131237	+
intron-3CDS	ENST00000478884	ENST00000356079		TCGA	LD	LIHC	TCGA-CC-5258-01A	NBEAL1	chr2	203975005	+	CYP20A1	chr2	204131237	+
intron-3UTR	ENST00000478884	ENST00000461371		TCGA	LD	LIHC	TCGA-CC-5258-01A	NBEAL1	chr2	203975005	+	CYP20A1	chr2	204131237	+
intron-3UTR	ENST00000478884	ENST00000429815		TCGA	LD	LIHC	TCGA-CC-5258-01A	NBEAL1	chr2	203975005	+	CYP20A1	chr2	204131237	+
5UTR-3CDS	ENST00000298569	ENST00000345807		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000298569	ENST00000310418		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-intron	ENST00000298569	ENST00000509319		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000393728	ENST00000345807		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000393728	ENST00000310418		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-intron	ENST00000393728	ENST00000509319		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000393725	ENST00000345807		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000393725	ENST00000310418		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-intron	ENST00000393725	ENST00000509319		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000510164	ENST00000345807		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000510164	ENST00000310418		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-intron	ENST00000510164	ENST00000509319		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000533553	ENST00000345807		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-3CDS	ENST00000533553	ENST00000310418		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
5UTR-intron	ENST00000533553	ENST00000509319		TCGA	LD	LIHC	TCGA-CC-5259-01A	KIAA1191	chr5	175788605	-	CLTB	chr5	175819946	-
intron-3CDS	ENST00000360605	ENST00000355481		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
intron-3CDS	ENST00000360605	ENST00000360985		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
intron-3CDS	ENST00000360605	ENST00000359596		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000542441	ENST00000355481		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000542441	ENST00000360985		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000542441	ENST00000359596		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
5UTR-3CDS	ENST00000392271	ENST00000355481		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
5UTR-3CDS	ENST00000392271	ENST00000360985		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
5UTR-3CDS	ENST00000392271	ENST00000359596		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000312051	ENST00000355481		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000312051	ENST00000360985		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000312051	ENST00000359596		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
intron-3CDS	ENST00000574176	ENST00000355481		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
intron-3CDS	ENST00000574176	ENST00000360985		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
intron-3CDS	ENST00000574176	ENST00000359596		TCGA	LD	LIHC	TCGA-CC-5260-01A	URI1	chr19	30433571	+	RYR1	chr19	39038873	+
Frame-shit	ENST00000337537	ENST00000321731		TCGA	LD	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60935254	-
Frame-shit	ENST00000555899	ENST00000321731		TCGA	LD	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60935254	-
intron-3CDS	ENST00000422769	ENST00000321731		TCGA	LD	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60935254	-
5UTR-3CDS	ENST00000553266	ENST00000321731		TCGA	LD	LIHC	TCGA-CC-5261-01A	PPP2R5E	chr14	64006247	-	C14orf39	chr14	60935254	-
Frame-shit	ENST00000357654	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000357654	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000357654	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000351666	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000351666	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000351666	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000309486	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000309486	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000309486	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000346315	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000346315	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000346315	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000354071	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000354071	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000354071	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000352993	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000352993	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000352993	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000468300	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000468300	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000468300	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
In-frame	ENST00000591534	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
In-frame	ENST00000591534	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
In-frame	ENST00000591534	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
intron-3CDS	ENST00000591849	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
intron-3CDS	ENST00000591849	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
intron-3CDS	ENST00000591849	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000586385	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000586385	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000586385	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000493795	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000493795	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000493795	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000471181	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000471181	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000471181	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000491747	ENST00000361523		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000491747	ENST00000590099		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
Frame-shit	ENST00000491747	ENST00000438274		TCGA	LD	LIHC	TCGA-CC-5263-01A	BRCA1	chr17	41209069	-	BECN1	chr17	40968072	-
intron-3CDS	ENST00000341217	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000341217	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000341217	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000341217	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000581407	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000581407	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000581407	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000581407	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000582266	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000582266	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000582266	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000582266	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000452648	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000452648	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000452648	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000452648	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000582059	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000582059	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000582059	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000582059	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000583953	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000583953	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-intron	ENST00000583953	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-intron	ENST00000583953	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000577682	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000577682	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-intron	ENST00000577682	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-intron	ENST00000577682	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000583522	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000583522	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-intron	ENST00000583522	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-intron	ENST00000583522	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000581381	ENST00000394906		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-3CDS	ENST00000581381	ENST00000394908		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000581381	ENST00000585169		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
intron-intron	ENST00000581381	ENST00000577789		TCGA	LD	LIHC	TCGA-CC-5263-01A	FAM222B	chr17	27161311	-	FLOT2	chr17	27211333	-
5UTR-3CDS	ENST00000245441	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000245441	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000245441	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000389868	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000389868	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000389868	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000530997	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000530997	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000530997	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000382043	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000382043	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382043	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000382041	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000382041	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000382041	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000324330	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000324330	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000324330	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000453196	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-3CDS	ENST00000453196	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
5UTR-intron	ENST00000453196	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000486200	ENST00000288398		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000486200	ENST00000358278		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000560445		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000403994		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000357980		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000559556		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000559397		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000267996		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000334895		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000404484		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000560959		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000559281		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
intron-intron	ENST00000486200	ENST00000317516		TCGA	LD	LIHC	TCGA-CC-5263-01A	NIN	chr14	51297182	-	TPM1	chr15	63349184	+
In-frame	ENST00000368467	ENST00000446176		TCGA	LD	LIHC	TCGA-CC-5263-01A	PMVK	chr1	154909067	-	FNBP1	chr9	132691974	-
In-frame	ENST00000368467	ENST00000420781		TCGA	LD	LIHC	TCGA-CC-5263-01A	PMVK	chr1	154909067	-	FNBP1	chr9	132691974	-
In-frame	ENST00000368467	ENST00000355681		TCGA	LD	LIHC	TCGA-CC-5263-01A	PMVK	chr1	154909067	-	FNBP1	chr9	132691974	-
5CDS-intron	ENST00000368467	ENST00000443566		TCGA	LD	LIHC	TCGA-CC-5263-01A	PMVK	chr1	154909067	-	FNBP1	chr9	132691974	-
5CDS-intron	ENST00000368467	ENST00000478129		TCGA	LD	LIHC	TCGA-CC-5263-01A	PMVK	chr1	154909067	-	FNBP1	chr9	132691974	-
5UTR-3CDS	ENST00000351018	ENST00000308831		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
5UTR-intron	ENST00000351018	ENST00000533360		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
5UTR-intron	ENST00000351018	ENST00000532559		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-3CDS	ENST00000396979	ENST00000308831		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-intron	ENST00000396979	ENST00000533360		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-intron	ENST00000396979	ENST00000532559		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-3CDS	ENST00000396978	ENST00000308831		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-intron	ENST00000396978	ENST00000533360		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-intron	ENST00000396978	ENST00000532559		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-3CDS	ENST00000533217	ENST00000308831		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-intron	ENST00000533217	ENST00000533360		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
intron-intron	ENST00000533217	ENST00000532559		TCGA	LD	LIHC	TCGA-CC-5263-01A	RHOG	chr11	3862124	-	RHOD	chr11	66838906	+
In-frame	ENST00000394671	ENST00000261811		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000394671	ENST00000509789		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000511410	ENST00000261811		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000511410	ENST00000509789		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
5UTR-3CDS	ENST00000537378	ENST00000261811		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
5UTR-3UTR	ENST00000537378	ENST00000509789		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
In-frame	ENST00000252100	ENST00000261811		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000252100	ENST00000509789		TCGA	LD	LIHC	TCGA-CC-5263-01A	TMCO6	chr5	140021365	+	CYSTM1	chr5	139622890	+
In-frame	ENST00000375200	ENST00000375222		TCGA	LD	LIHC	TCGA-CC-5263-01A	ZNF341	chr20	32319858	+	C20orf144	chr20	32251338	+
In-frame	ENST00000342427	ENST00000375222		TCGA	LD	LIHC	TCGA-CC-5263-01A	ZNF341	chr20	32319858	+	C20orf144	chr20	32251338	+
In-frame	ENST00000371828	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000371828	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000371828	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
In-frame	ENST00000371802	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000371802	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000371802	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000371856	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
In-frame	ENST00000371856	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000371856	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
In-frame	ENST00000347458	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000347458	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000347458	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
In-frame	ENST00000340954	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000340954	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000340954	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
In-frame	ENST00000371792	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000371792	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000371792	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
In-frame	ENST00000360426	ENST00000371941		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000360426	ENST00000396220		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
5CDS-intron	ENST00000360426	ENST00000496915		TCGA	LD	LIHC	TCGA-CC-A1HT-01A	STAU1	chr20	47732319	-	PREX1	chr20	47247332	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	LD	LIHC	TCGA-CC-A3M9-01A	FGFR3	chr4	1801539	+	TACC3	chr4	1746245	+
In-frame	ENST00000369291	ENST00000400889		TCGA	LD	LIHC	TCGA-CC-A3MA-01A	RNF115	chr1	145650540	-	FAM72D	chr1	143897641	+
5CDS-intron	ENST00000366667	ENST00000390168		TCGA	LD	LIHC	TCGA-CC-A3MB-01A	AGT	chr1	230839939	-	H19	chr11	2017024	-
In-frame	ENST00000393792	ENST00000176763		TCGA	LD	LIHC	TCGA-CC-A3MB-01A	UBTD2	chr5	171710600	-	STK10	chr5	171554425	-
5CDS-intron	ENST00000393792	ENST00000517775		TCGA	LD	LIHC	TCGA-CC-A3MB-01A	UBTD2	chr5	171710600	-	STK10	chr5	171554425	-
In-frame	ENST00000420083	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000420083	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000420083	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000449870	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000449870	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000318511	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000318511	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000407004	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000407004	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000589998	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000589998	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000250241	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000250241	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000592763	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000592763	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000588657	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000588657	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
In-frame	ENST00000590261	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
5CDS-intron	ENST00000590261	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000358026		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000344626		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000429416		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000541122		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000589677		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000444061		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000590574		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000413806		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000586544	ENST00000450717		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-intron	ENST00000586544	ENST00000538456		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	ILF3	chr19	10782211	+	SMARCA4	chr19	11134194	+
intron-3CDS	ENST00000372084	ENST00000262746		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
intron-3CDS	ENST00000372084	ENST00000319248		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
intron-3CDS	ENST00000372084	ENST00000372079		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
intron-intron	ENST00000372084	ENST00000483583		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000372086	ENST00000262746		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000372086	ENST00000319248		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000372086	ENST00000372079		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-intron	ENST00000372086	ENST00000483583		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000341771	ENST00000262746		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000341771	ENST00000319248		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000341771	ENST00000372079		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-intron	ENST00000341771	ENST00000483583		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000486676	ENST00000262746		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000486676	ENST00000319248		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000486676	ENST00000372079		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-intron	ENST00000486676	ENST00000483583		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000538496	ENST00000262746		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000538496	ENST00000319248		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000538496	ENST00000372079		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-intron	ENST00000538496	ENST00000483583		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000451835	ENST00000262746		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000451835	ENST00000319248		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000451835	ENST00000372079		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-intron	ENST00000451835	ENST00000483583		TCGA	LD	LIHC	TCGA-CC-A7IE-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45977086	-
5UTR-3CDS	ENST00000369893	ENST00000369902		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
5UTR-3CDS	ENST00000369893	ENST00000369899		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
5UTR-3CDS	ENST00000369893	ENST00000423559		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
5UTR-3UTR	ENST00000369893	ENST00000471000		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3CDS	ENST00000602785	ENST00000369902		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3CDS	ENST00000602785	ENST00000369899		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3CDS	ENST00000602785	ENST00000423559		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3UTR	ENST00000602785	ENST00000471000		TCGA	LD	LIHC	TCGA-CC-A7IG-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
intron-intron	ENST00000524630	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000524630	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000524630	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000524630	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000524630	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000529919	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000529919	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000529919	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000529919	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000529919	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000399039	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000399039	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000399039	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000399039	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
intron-intron	ENST00000399039	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000360682	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000360682	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000360682	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000360682	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000360682	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361796	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361796	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361796	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361796	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361796	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361391	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361391	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361391	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361391	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361391	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530094	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530094	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530094	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530094	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530094	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000428599	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000428599	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000428599	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000428599	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000428599	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361332	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361332	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361332	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361332	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000361332	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000527467	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000527467	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000527467	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000527467	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000527467	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000415361	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000415361	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000415361	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000415361	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000415361	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532245	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532245	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532245	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532245	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532245	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532463	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532463	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532463	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532463	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532463	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528232	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528232	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528232	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528232	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528232	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529986	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529986	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529986	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529986	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529986	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000531014	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000531014	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000531014	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000531014	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000531014	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000358694	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000358694	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000358694	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000358694	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000358694	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526772	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526772	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526772	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526772	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526772	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532787	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532787	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532787	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532787	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532787	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000533667	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000533667	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000533667	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000533667	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000533667	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529873	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529873	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529873	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529873	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529873	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000525902	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000525902	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000525902	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000525902	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000525902	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529526	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529526	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529526	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529526	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000529526	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532649	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532649	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532649	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532649	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532649	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000426142	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000426142	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000426142	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000426142	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000426142	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532844	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532844	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532844	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532844	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000532844	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528621	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528621	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528621	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528621	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000528621	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000399050	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000399050	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000399050	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000399050	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000399050	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526357	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526357	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526357	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526357	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526357	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530748	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530748	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530748	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530748	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000530748	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000534579	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000534579	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000534579	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000534579	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000534579	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526938	ENST00000543304		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526938	ENST00000334805		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526938	ENST00000538536		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526938	ENST00000538437		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-intron	ENST00000526938	ENST00000545082		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	CTNND1	chr11	57529518	+	STARD10	chr11	72504969	-
5UTR-3CDS	ENST00000357066	ENST00000211998		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
5UTR-3CDS	ENST00000357066	ENST00000372755		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
5UTR-intron	ENST00000357066	ENST00000478896		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
5UTR-intron	ENST00000357066	ENST00000417648		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-3CDS	ENST00000592143	ENST00000211998		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-3CDS	ENST00000592143	ENST00000372755		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-intron	ENST00000592143	ENST00000478896		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-intron	ENST00000592143	ENST00000417648		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-3CDS	ENST00000592280	ENST00000211998		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-3CDS	ENST00000592280	ENST00000372755		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-intron	ENST00000592280	ENST00000478896		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
intron-intron	ENST00000592280	ENST00000417648		TCGA	LD	LIHC	TCGA-CC-A7IJ-01A	MOB3A	chr19	2096225	-	VCL	chr10	75877781	+
Frame-shit	ENST00000338854	ENST00000313250		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000558263		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000543741		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000382761		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000397073		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000308178		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000421831		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000397075		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000397074		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000559632		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000338854	ENST00000558581		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000313250		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000558263		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000543741		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000382761		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000397073		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000308178		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000421831		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000397075		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000397074		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000559632		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000395757	ENST00000558581		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000313250		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000558263		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000543741		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000382761		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000397073		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000308178		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000421831		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000397075		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000397074		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000559632		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000355815	ENST00000558581		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000313250		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000558263		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000543741		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000382761		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000397073		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000308178		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000421831		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000397075		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000397074		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000559632		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000261646	ENST00000558581		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000313250		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000558263		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000543741		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000382761		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000397073		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000308178		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000421831		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000397075		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000397074		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000559632		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
Frame-shit	ENST00000435530	ENST00000558581		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000313250		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000558263		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000543741		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000382761		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000397073		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000308178		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000421831		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000397075		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000397074		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000559632		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
intron-3CDS	ENST00000583732	ENST00000558581		TCGA	LD	LIHC	TCGA-CC-A7IK-01A	SREBF1	chr17	17740041	-	DHRS4	chr14	24424244	+
5CDS-5UTR	ENST00000367028	ENST00000272167		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000367028	ENST00000366837		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-intron	ENST00000367028	ENST00000467015		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000261465	ENST00000272167		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000261465	ENST00000366837		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-intron	ENST00000261465	ENST00000467015		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000367027	ENST00000272167		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000367027	ENST00000366837		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-intron	ENST00000367027	ENST00000467015		TCGA	LD	LIHC	TCGA-CC-A7IL-01A	HSD11B1	chr1	209880473	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000375864	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000375864	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000375864	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000375864	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000409525	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000409525	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000409525	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000409525	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000471088	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000471088	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000471088	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000471088	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000480530	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000480530	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000480530	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480530	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000484964	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000484964	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000484964	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000484964	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000556456	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000556456	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000556456	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000556456	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000437674	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000437674	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000437674	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000437674	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000383429	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000383429	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000383429	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000383429	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000480515	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000480515	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000480515	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000480515	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000456439	ENST00000538442		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000456439	ENST00000399150		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000456439	ENST00000252229		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000427115		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000442104		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000451603		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000546706		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000438954		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000458032		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000551950		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000437651		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000383514		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000551608		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000436531		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000436655		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000547574		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000400313		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000428416		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000549014		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000428059		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000451789		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000443156		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
intron-intron	ENST00000456439	ENST00000551960		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	LY6G5B	chr6	31639061	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000295874	ENST00000462069		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-3UTR	ENST00000295874	ENST00000486169		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-intron	ENST00000295874	ENST00000232519		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000295874	ENST00000494481		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000295874	ENST00000542214		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000474889	ENST00000462069		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-3UTR	ENST00000474889	ENST00000486169		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-intron	ENST00000474889	ENST00000232519		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000474889	ENST00000494481		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000474889	ENST00000542214		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
3UTR-5UTR	ENST00000495879	ENST00000462069		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
3UTR-3UTR	ENST00000495879	ENST00000486169		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
3UTR-intron	ENST00000495879	ENST00000232519		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
3UTR-5UTR	ENST00000495879	ENST00000494481		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
3UTR-5UTR	ENST00000495879	ENST00000542214		TCGA	LD	LIHC	TCGA-CC-A8HT-01A	PTPRG	chr3	61548046	+	C3orf14	chr3	62305396	+
5CDS-5UTR	ENST00000377067	ENST00000436290		TCGA	LD	LIHC	TCGA-CC-A8HU-01A	GPC5	chr13	92797242	+	MIR4500HG	chr13	88113224	-
intron-5UTR	ENST00000483422	ENST00000436290		TCGA	LD	LIHC	TCGA-CC-A8HU-01A	GPC5	chr13	92797242	+	MIR4500HG	chr13	88113224	-
Frame-shit	ENST00000295688	ENST00000368174		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
5CDS-intron	ENST00000295688	ENST00000484609		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
Frame-shit	ENST00000368259	ENST00000368174		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
5CDS-intron	ENST00000368259	ENST00000484609		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
In-frame	ENST00000368261	ENST00000368174		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
5CDS-intron	ENST00000368261	ENST00000484609		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
Frame-shit	ENST00000472765	ENST00000368174		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
5CDS-intron	ENST00000472765	ENST00000484609		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
intron-3CDS	ENST00000368256	ENST00000368174		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
intron-intron	ENST00000368256	ENST00000484609		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CCT3	chr1	156280349	-	CD5L	chr1	157803302	-
Frame-shit	ENST00000360608	ENST00000330884		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
5CDS-intron	ENST00000360608	ENST00000540422		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
5CDS-intron	ENST00000360608	ENST00000249130		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
Frame-shit	ENST00000389970	ENST00000330884		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
5CDS-intron	ENST00000389970	ENST00000540422		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
5CDS-intron	ENST00000389970	ENST00000249130		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
Frame-shit	ENST00000359033	ENST00000330884		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
5CDS-intron	ENST00000359033	ENST00000540422		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
5CDS-intron	ENST00000359033	ENST00000249130		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	CYP2D6	chr22	42526614	-	SULT4A1	chr22	44237812	-
Frame-shit	ENST00000354329	ENST00000269033		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000354329	ENST00000540801		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000354329	ENST00000324677		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000354329	ENST00000582084		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000354329	ENST00000590153		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000354329	ENST00000579954		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
intron-3CDS	ENST00000529578	ENST00000269033		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
intron-3CDS	ENST00000529578	ENST00000540801		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
intron-intron	ENST00000529578	ENST00000324677		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
intron-intron	ENST00000529578	ENST00000582084		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
intron-intron	ENST00000529578	ENST00000590153		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
intron-intron	ENST00000529578	ENST00000579954		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000533112	ENST00000269033		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000533112	ENST00000540801		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000533112	ENST00000324677		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000533112	ENST00000582084		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000533112	ENST00000590153		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000533112	ENST00000579954		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000531253	ENST00000269033		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000531253	ENST00000540801		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000531253	ENST00000324677		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000531253	ENST00000582084		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000531253	ENST00000590153		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000531253	ENST00000579954		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000527372	ENST00000269033		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000527372	ENST00000540801		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000527372	ENST00000324677		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000527372	ENST00000582084		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000527372	ENST00000590153		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000527372	ENST00000579954		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	MYO18A	chr17	27421668	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000343529	ENST00000297431		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
In-frame	ENST00000343529	ENST00000545943		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000343529	ENST00000447452		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000343529	ENST00000485726		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
Frame-shit	ENST00000428762	ENST00000297431		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
In-frame	ENST00000428762	ENST00000545943		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000428762	ENST00000447452		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000428762	ENST00000485726		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
Frame-shit	ENST00000424685	ENST00000297431		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
In-frame	ENST00000424685	ENST00000545943		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000424685	ENST00000447452		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000424685	ENST00000485726		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
intron-3CDS	ENST00000473945	ENST00000297431		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
intron-3CDS	ENST00000473945	ENST00000545943		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
intron-intron	ENST00000473945	ENST00000447452		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
intron-intron	ENST00000473945	ENST00000485726		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	RELN	chr7	103175763	-	ORC5	chr7	103767340	-
Frame-shit	ENST00000305513	ENST00000574876		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SMYD4	chr17	1686329	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000305513	ENST00000572293		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SMYD4	chr17	1686329	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000305513	ENST00000269230		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SMYD4	chr17	1686329	-	PELP1	chr17	4594737	-
Frame-shit	ENST00000305513	ENST00000301396		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SMYD4	chr17	1686329	-	PELP1	chr17	4594737	-
5CDS-5UTR	ENST00000305513	ENST00000436683		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SMYD4	chr17	1686329	-	PELP1	chr17	4594737	-
5CDS-5UTR	ENST00000305513	ENST00000570823		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SMYD4	chr17	1686329	-	PELP1	chr17	4594737	-
5CDS-5UTR	ENST00000523430	ENST00000453134		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000523430	ENST00000583458		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000523430	ENST00000415831		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000523430	ENST00000582043		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000523430	ENST00000580155		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000523430	ENST00000584778		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000523430	ENST00000578887		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000265896	ENST00000453134		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000265896	ENST00000583458		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000265896	ENST00000415831		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000265896	ENST00000582043		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000265896	ENST00000580155		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000265896	ENST00000584778		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000265896	ENST00000578887		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SQLE	chr8	126023874	+	RBFOX3	chr17	77303906	-
intron-3CDS	ENST00000414007	ENST00000380518		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-intron	ENST00000414007	ENST00000493991		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-intron	ENST00000414007	ENST00000337299		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-3CDS	ENST00000419187	ENST00000380518		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-intron	ENST00000419187	ENST00000493991		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-intron	ENST00000419187	ENST00000337299		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-3CDS	ENST00000471256	ENST00000380518		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-intron	ENST00000471256	ENST00000493991		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
intron-intron	ENST00000471256	ENST00000337299		TCGA	LD	LIHC	TCGA-CC-A8HV-01A	SRGAP2	chr1	144014093	+	COL2A1	chr12	48392214	-
In-frame	ENST00000349703	ENST00000273857		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
In-frame	ENST00000349703	ENST00000508498		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
In-frame	ENST00000349703	ENST00000502252		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5CDS-intron	ENST00000349703	ENST00000505909		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5CDS-intron	ENST00000349703	ENST00000504584		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5CDS-intron	ENST00000349703	ENST00000515827		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
In-frame	ENST00000381897	ENST00000273857		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
In-frame	ENST00000381897	ENST00000508498		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
In-frame	ENST00000381897	ENST00000502252		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5CDS-intron	ENST00000381897	ENST00000505909		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5CDS-intron	ENST00000381897	ENST00000504584		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5CDS-intron	ENST00000381897	ENST00000515827		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5UTR-3CDS	ENST00000418436	ENST00000273857		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5UTR-3CDS	ENST00000418436	ENST00000508498		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5UTR-3CDS	ENST00000418436	ENST00000502252		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5UTR-intron	ENST00000418436	ENST00000505909		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5UTR-intron	ENST00000418436	ENST00000504584		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
5UTR-intron	ENST00000418436	ENST00000515827		TCGA	LD	LIHC	TCGA-CC-A9FU-01A	RFC1	chr4	39343965	-	CORIN	chr4	47682268	-
In-frame	ENST00000411641	ENST00000402696		TCGA	LD	LIHC	TCGA-CC-A9FW-01A	AHSG	chr3	186331143	+	TF	chr3	133483026	+
In-frame	ENST00000411641	ENST00000264998		TCGA	LD	LIHC	TCGA-CC-A9FW-01A	AHSG	chr3	186331143	+	TF	chr3	133483026	+
5CDS-intron	ENST00000411641	ENST00000475382		TCGA	LD	LIHC	TCGA-CC-A9FW-01A	AHSG	chr3	186331143	+	TF	chr3	133483026	+
In-frame	ENST00000273784	ENST00000402696		TCGA	LD	LIHC	TCGA-CC-A9FW-01A	AHSG	chr3	186331143	+	TF	chr3	133483026	+
In-frame	ENST00000273784	ENST00000264998		TCGA	LD	LIHC	TCGA-CC-A9FW-01A	AHSG	chr3	186331143	+	TF	chr3	133483026	+
5CDS-intron	ENST00000273784	ENST00000475382		TCGA	LD	LIHC	TCGA-CC-A9FW-01A	AHSG	chr3	186331143	+	TF	chr3	133483026	+
Frame-shit	ENST00000314349	ENST00000279804		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
Frame-shit	ENST00000314349	ENST00000395019		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
Frame-shit	ENST00000607714	ENST00000279804		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
Frame-shit	ENST00000607714	ENST00000395019		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
intron-3CDS	ENST00000599794	ENST00000279804		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
intron-3CDS	ENST00000599794	ENST00000395019		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
Frame-shit	ENST00000544017	ENST00000279804		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
Frame-shit	ENST00000544017	ENST00000395019		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
intron-3CDS	ENST00000600878	ENST00000279804		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
intron-3CDS	ENST00000600878	ENST00000395019		TCGA	LD	LIHC	TCGA-DD-A113-01A	TIMM50	chr19	39977135	+	CTF1	chr16	30910736	+
Frame-shit	ENST00000536015	ENST00000484157		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
In-frame	ENST00000536015	ENST00000303343		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
In-frame	ENST00000536015	ENST00000368404		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000536015	ENST00000368401		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
5CDS-3UTR	ENST00000536015	ENST00000368405		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000484157		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000303343		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000368404		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
Frame-shit	ENST00000283684	ENST00000368401		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
5CDS-3UTR	ENST00000283684	ENST00000368405		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000484157		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000303343		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000368404		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3CDS	ENST00000589147	ENST00000368401		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
intron-3UTR	ENST00000589147	ENST00000368405		TCGA	LD	LIHC	TCGA-DD-A115-01A	ATP8B1	chr18	55362403	-	SLC50A1	chr1	155108775	+
5CDS-intron	ENST00000308197	ENST00000267023		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000308197	ENST00000380198		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000308197	ENST00000341463		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000433805	ENST00000267023		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000433805	ENST00000380198		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000433805	ENST00000341463		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000546544	ENST00000267023		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000546544	ENST00000380198		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5CDS-intron	ENST00000546544	ENST00000341463		TCGA	LD	LIHC	TCGA-DD-A115-01A	COQ10A	chr12	56663345	+	NABP2	chr12	56617368	+
5UTR-3CDS	ENST00000355630	ENST00000297423		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000355630	ENST00000518074		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000355630	ENST00000541342		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000355630	ENST00000521214		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000355630	ENST00000517693		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000355630	ENST00000518060		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000396617	ENST00000297423		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000396617	ENST00000518074		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000396617	ENST00000541342		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000396617	ENST00000521214		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000396617	ENST00000517693		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000396617	ENST00000518060		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000402042	ENST00000297423		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000402042	ENST00000518074		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000402042	ENST00000541342		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000402042	ENST00000521214		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000402042	ENST00000517693		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000402042	ENST00000518060		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000466278	ENST00000297423		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000466278	ENST00000518074		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3CDS	ENST00000466278	ENST00000541342		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-3UTR	ENST00000466278	ENST00000521214		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-5UTR	ENST00000466278	ENST00000517693		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
5UTR-intron	ENST00000466278	ENST00000518060		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000407029	ENST00000297423		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000407029	ENST00000518074		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000407029	ENST00000541342		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3UTR	ENST00000407029	ENST00000521214		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-5UTR	ENST00000407029	ENST00000517693		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-intron	ENST00000407029	ENST00000518060		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000402630	ENST00000297423		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000402630	ENST00000518074		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3CDS	ENST00000402630	ENST00000541342		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-3UTR	ENST00000402630	ENST00000521214		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-5UTR	ENST00000402630	ENST00000517693		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
intron-intron	ENST00000402630	ENST00000518060		TCGA	LD	LIHC	TCGA-DD-A115-01A	MKL1	chr22	41032482	-	SPIDR	chr8	48586363	+
Frame-shit	ENST00000539591	ENST00000378407		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000378406		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000426546		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000327351		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000421582		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
Frame-shit	ENST00000539591	ENST00000378409		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLC25A30	chr13	45983062	-	CCDC107	chr9	35658573	+
intron-intron	ENST00000526660	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000526660	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000526660	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000526660	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000526660	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000526660	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000289575	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000289575	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000289575	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000289575	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000289575	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000289575	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000341411	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000341411	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000341411	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000341411	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000341411	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000341411	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000532236	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000532236	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000532236	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000532236	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000532236	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000532236	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000531756	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000531756	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000531756	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000531756	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000531756	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000531756	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000525650	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000525650	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000525650	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000525650	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000525650	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000525650	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000454962	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000454962	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000454962	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000454962	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000454962	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
intron-intron	ENST00000454962	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
5UTR-intron	ENST00000428359	ENST00000316673		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
5UTR-intron	ENST00000428359	ENST00000609795		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
5UTR-intron	ENST00000428359	ENST00000457232		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
5UTR-intron	ENST00000428359	ENST00000443598		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
5UTR-intron	ENST00000428359	ENST00000316099		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
5UTR-intron	ENST00000428359	ENST00000415691		TCGA	LD	LIHC	TCGA-DD-A115-01A	SLCO2B1	chr11	74870917	+	HNF4A	chr20	43031194	+
Frame-shit	ENST00000324589	ENST00000476844		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000324589	ENST00000492590		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000324589	ENST00000466788		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000324589	ENST00000468189		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000324589	ENST00000341848		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000349752	ENST00000476844		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000349752	ENST00000492590		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000349752	ENST00000466788		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000349752	ENST00000468189		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000349752	ENST00000341848		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000406653	ENST00000476844		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000406653	ENST00000492590		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000406653	ENST00000466788		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000406653	ENST00000468189		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000406653	ENST00000341848		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000356174	ENST00000476844		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000356174	ENST00000492590		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000356174	ENST00000466788		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000356174	ENST00000468189		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000356174	ENST00000341848		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000420311	ENST00000476844		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000420311	ENST00000492590		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000420311	ENST00000466788		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000420311	ENST00000468189		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000420311	ENST00000341848		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000486564	ENST00000476844		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000486564	ENST00000492590		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000486564	ENST00000466788		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000486564	ENST00000468189		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000486564	ENST00000341848		TCGA	LD	LIHC	TCGA-DD-A116-01A	GALNT14	chr2	31189070	-	FHIT	chr3	59738047	-
In-frame	ENST00000296484	ENST00000305533		TCGA	LD	LIHC	TCGA-DD-A118-01A	POC1A	chr3	52156395	-	TWF2	chr3	52265011	-
In-frame	ENST00000296484	ENST00000499914		TCGA	LD	LIHC	TCGA-DD-A118-01A	POC1A	chr3	52156395	-	TWF2	chr3	52265011	-
In-frame	ENST00000394970	ENST00000305533		TCGA	LD	LIHC	TCGA-DD-A118-01A	POC1A	chr3	52156395	-	TWF2	chr3	52265011	-
In-frame	ENST00000394970	ENST00000499914		TCGA	LD	LIHC	TCGA-DD-A118-01A	POC1A	chr3	52156395	-	TWF2	chr3	52265011	-
Frame-shit	ENST00000474012	ENST00000305533		TCGA	LD	LIHC	TCGA-DD-A118-01A	POC1A	chr3	52156395	-	TWF2	chr3	52265011	-
Frame-shit	ENST00000474012	ENST00000499914		TCGA	LD	LIHC	TCGA-DD-A118-01A	POC1A	chr3	52156395	-	TWF2	chr3	52265011	-
Frame-shit	ENST00000368445	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000368445	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000368445	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-3CDS	ENST00000368449	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-intron	ENST00000368449	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-intron	ENST00000368449	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
Frame-shit	ENST00000448116	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000448116	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000448116	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
Frame-shit	ENST00000368450	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000368450	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000368450	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
Frame-shit	ENST00000368453	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000368453	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5CDS-intron	ENST00000368453	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-3CDS	ENST00000606391	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-intron	ENST00000606391	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-intron	ENST00000606391	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-3CDS	ENST00000490667	ENST00000368559		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-intron	ENST00000490667	ENST00000368553		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
intron-intron	ENST00000490667	ENST00000271854		TCGA	LD	LIHC	TCGA-DD-A118-01A	SHC1	chr1	154942508	-	NUP210L	chr1	154072619	-
5UTR-3CDS	ENST00000252840	ENST00000381393		TCGA	LD	LIHC	TCGA-DD-A118-01A	ZNF557	chr19	7070664	+	MBD3L2	chr19	7051052	+
5UTR-3CDS	ENST00000414706	ENST00000381393		TCGA	LD	LIHC	TCGA-DD-A118-01A	ZNF557	chr19	7070664	+	MBD3L2	chr19	7051052	+
5UTR-3CDS	ENST00000439035	ENST00000381393		TCGA	LD	LIHC	TCGA-DD-A118-01A	ZNF557	chr19	7070664	+	MBD3L2	chr19	7051052	+
3UTR-3CDS	ENST00000474476	ENST00000371208		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
3UTR-3UTR	ENST00000474476	ENST00000465876		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
3UTR-3UTR	ENST00000474476	ENST00000395561		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
In-frame	ENST00000371218	ENST00000371208		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000371218	ENST00000465876		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000371218	ENST00000395561		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
In-frame	ENST00000303721	ENST00000371208		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000303721	ENST00000465876		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000303721	ENST00000395561		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
In-frame	ENST00000371212	ENST00000371208		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000371212	ENST00000465876		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000371212	ENST00000395561		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
In-frame	ENST00000371210	ENST00000371208		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000371210	ENST00000465876		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-3UTR	ENST00000371210	ENST00000395561		TCGA	LD	LIHC	TCGA-DD-A11A-01A	FGGY	chr1	60073582	+	HOOK1	chr1	60299077	+
5CDS-5UTR	ENST00000354546	ENST00000521308		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000354546	ENST00000355417		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000523714	ENST00000521308		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000523714	ENST00000355417		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000356496	ENST00000521308		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000356496	ENST00000355417		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000377751	ENST00000521308		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000377751	ENST00000355417		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000521512	ENST00000521308		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
5CDS-5UTR	ENST00000521512	ENST00000355417		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
intron-5UTR	ENST00000519610	ENST00000521308		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
intron-5UTR	ENST00000519610	ENST00000355417		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ANXA6	chr5	150501708	-	CCDC69	chr5	150567020	-
Frame-shit	ENST00000262367	ENST00000301749		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-intron	ENST00000262367	ENST00000359128		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-5UTR	ENST00000262367	ENST00000419350		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-5UTR	ENST00000262367	ENST00000448023		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-5UTR	ENST00000262367	ENST00000603507		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-intron	ENST00000262367	ENST00000324659		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
Frame-shit	ENST00000382070	ENST00000301749		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-intron	ENST00000382070	ENST00000359128		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-5UTR	ENST00000382070	ENST00000419350		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-5UTR	ENST00000382070	ENST00000448023		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-5UTR	ENST00000382070	ENST00000603507		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-intron	ENST00000382070	ENST00000324659		TCGA	LD	LIHC	TCGA-DD-A11C-01A	CREBBP	chr16	3817721	-	NLRC3	chr16	3598753	-
5CDS-intron	ENST00000272167	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000272167	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000272167	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000272167	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000272167	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000272167	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000366837	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000366837	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000366837	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000366837	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000366837	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000366837	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000467015	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000467015	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000467015	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000467015	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000467015	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
intron-intron	ENST00000467015	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-A11C-01A	EPHX1	chr1	226032324	+	RAD51B	chr14	69061202	+
5CDS-intron	ENST00000269216	ENST00000327155		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000269216	ENST00000399722		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000269216	ENST00000399725		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000269216	ENST00000360790		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000269216	ENST00000581687		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000581694	ENST00000327155		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000581694	ENST00000399722		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000581694	ENST00000399725		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000581694	ENST00000360790		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5CDS-intron	ENST00000581694	ENST00000581687		TCGA	LD	LIHC	TCGA-DD-A11C-01A	GATA6	chr18	19763004	+	RBBP8	chr18	20491563	+
5UTR-3CDS	ENST00000296603	ENST00000397338		TCGA	LD	LIHC	TCGA-DD-A11C-01A	LMBRD2	chr5	36151658	-	NADK2	chr5	36207367	-
5UTR-3CDS	ENST00000296603	ENST00000282512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	LMBRD2	chr5	36151658	-	NADK2	chr5	36207367	-
5UTR-3CDS	ENST00000296603	ENST00000381937		TCGA	LD	LIHC	TCGA-DD-A11C-01A	LMBRD2	chr5	36151658	-	NADK2	chr5	36207367	-
5UTR-5UTR	ENST00000296603	ENST00000511613		TCGA	LD	LIHC	TCGA-DD-A11C-01A	LMBRD2	chr5	36151658	-	NADK2	chr5	36207367	-
5UTR-5UTR	ENST00000296603	ENST00000506945		TCGA	LD	LIHC	TCGA-DD-A11C-01A	LMBRD2	chr5	36151658	-	NADK2	chr5	36207367	-
5UTR-intron	ENST00000296603	ENST00000514504		TCGA	LD	LIHC	TCGA-DD-A11C-01A	LMBRD2	chr5	36151658	-	NADK2	chr5	36207367	-
intron-5UTR	ENST00000356415	ENST00000343534		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000356415	ENST00000369718		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000356415	ENST00000464591		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
5UTR-5UTR	ENST00000436150	ENST00000343534		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
5UTR-5UTR	ENST00000436150	ENST00000369718		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
5UTR-3UTR	ENST00000436150	ENST00000464591		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000369709	ENST00000343534		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000369709	ENST00000369718		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000369709	ENST00000464591		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000545460	ENST00000343534		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-5UTR	ENST00000545460	ENST00000369718		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
intron-3UTR	ENST00000545460	ENST00000464591		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
3UTR-5UTR	ENST00000494982	ENST00000343534		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
3UTR-5UTR	ENST00000494982	ENST00000369718		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
3UTR-3UTR	ENST00000494982	ENST00000464591		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RAP1A	chr1	112170181	+	C1orf162	chr1	112018640	+
In-frame	ENST00000508628	ENST00000263278		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000508628	ENST00000599157		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000456466	ENST00000263278		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000456466	ENST00000599157		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000582970	ENST00000263278		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000582970	ENST00000599157		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000319921	ENST00000263278		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
In-frame	ENST00000319921	ENST00000599157		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000336301	ENST00000263278		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000336301	ENST00000599157		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000427003	ENST00000263278		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000427003	ENST00000599157		TCGA	LD	LIHC	TCGA-DD-A11C-01A	RNF213	chr17	78286967	+	HSD17B14	chr19	49318398	-
5CDS-5UTR	ENST00000367975	ENST00000368003		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
5CDS-intron	ENST00000367975	ENST00000473766		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000342751	ENST00000368003		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
5CDS-intron	ENST00000342751	ENST00000473766		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
intron-5UTR	ENST00000432287	ENST00000368003		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
intron-intron	ENST00000432287	ENST00000473766		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
intron-5UTR	ENST00000392169	ENST00000368003		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
intron-intron	ENST00000392169	ENST00000473766		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
intron-5UTR	ENST00000513009	ENST00000368003		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
intron-intron	ENST00000513009	ENST00000473766		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
3UTR-5UTR	ENST00000470743	ENST00000368003		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
3UTR-intron	ENST00000470743	ENST00000473766		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SDHC	chr1	161298287	+	UFC1	chr1	161123716	+
Frame-shit	ENST00000464451	ENST00000405109		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
Frame-shit	ENST00000464451	ENST00000407609		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
In-frame	ENST00000464451	ENST00000405256		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
In-frame	ENST00000464451	ENST00000343941		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5CDS-3UTR	ENST00000464451	ENST00000492025		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
Frame-shit	ENST00000243253	ENST00000405109		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
Frame-shit	ENST00000243253	ENST00000407609		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
In-frame	ENST00000243253	ENST00000405256		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
In-frame	ENST00000243253	ENST00000343941		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5CDS-3UTR	ENST00000243253	ENST00000492025		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5UTR-3CDS	ENST00000424880	ENST00000405109		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5UTR-3CDS	ENST00000424880	ENST00000407609		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5UTR-3CDS	ENST00000424880	ENST00000405256		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5UTR-3CDS	ENST00000424880	ENST00000343941		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
5UTR-3UTR	ENST00000424880	ENST00000492025		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
intron-3CDS	ENST00000483956	ENST00000405109		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
intron-3CDS	ENST00000483956	ENST00000407609		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
intron-3CDS	ENST00000483956	ENST00000405256		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
intron-3CDS	ENST00000483956	ENST00000343941		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
intron-3UTR	ENST00000483956	ENST00000492025		TCGA	LD	LIHC	TCGA-DD-A11C-01A	SEC61A1	chr3	127771745	+	KBTBD12	chr3	127702940	+
In-frame	ENST00000303575	ENST00000310614		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
In-frame	ENST00000303575	ENST00000535529		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000303575	ENST00000411840		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000303575	ENST00000398483		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
5CDS-intron	ENST00000303575	ENST00000542303		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000303575	ENST00000314282		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000557670	ENST00000310614		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000557670	ENST00000535529		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000557670	ENST00000411840		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000557670	ENST00000398483		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
intron-intron	ENST00000557670	ENST00000542303		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000557670	ENST00000314282		TCGA	LD	LIHC	TCGA-DD-A11C-01A	TMED10	chr14	75643058	-	MRPL48	chr11	73555852	+
In-frame	ENST00000360079	ENST00000216254		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000360079	ENST00000396512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
5CDS-3UTR	ENST00000360079	ENST00000466237		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000402580	ENST00000216254		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000402580	ENST00000396512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
5CDS-3UTR	ENST00000402580	ENST00000466237		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
intron-3CDS	ENST00000428575	ENST00000216254		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
intron-3CDS	ENST00000428575	ENST00000396512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
intron-3UTR	ENST00000428575	ENST00000466237		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000359308	ENST00000216254		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000359308	ENST00000396512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
5CDS-3UTR	ENST00000359308	ENST00000466237		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000405878	ENST00000216254		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
In-frame	ENST00000405878	ENST00000396512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
5CDS-3UTR	ENST00000405878	ENST00000466237		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
intron-3CDS	ENST00000405506	ENST00000216254		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
intron-3CDS	ENST00000405506	ENST00000396512		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
intron-3UTR	ENST00000405506	ENST00000466237		TCGA	LD	LIHC	TCGA-DD-A11C-01A	XRCC6	chr22	42024234	+	ACO2	chr22	41916175	+
Frame-shit	ENST00000301011	ENST00000319555		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ZC3H18	chr16	88644134	+	ZFPM1	chr16	88580795	+
5CDS-3UTR	ENST00000301011	ENST00000569086		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ZC3H18	chr16	88644134	+	ZFPM1	chr16	88580795	+
Frame-shit	ENST00000452588	ENST00000319555		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ZC3H18	chr16	88644134	+	ZFPM1	chr16	88580795	+
5CDS-3UTR	ENST00000452588	ENST00000569086		TCGA	LD	LIHC	TCGA-DD-A11C-01A	ZC3H18	chr16	88644134	+	ZFPM1	chr16	88580795	+
5CDS-5UTR	ENST00000356840	ENST00000370388		TCGA	LD	LIHC	TCGA-DD-A11D-01A	MYLIP	chr6	16130978	+	KHDC1L	chr6	73935144	-
5CDS-5UTR	ENST00000356840	ENST00000471312		TCGA	LD	LIHC	TCGA-DD-A11D-01A	MYLIP	chr6	16130978	+	KHDC1L	chr6	73935144	-
intron-5UTR	ENST00000349606	ENST00000370388		TCGA	LD	LIHC	TCGA-DD-A11D-01A	MYLIP	chr6	16130978	+	KHDC1L	chr6	73935144	-
intron-5UTR	ENST00000349606	ENST00000471312		TCGA	LD	LIHC	TCGA-DD-A11D-01A	MYLIP	chr6	16130978	+	KHDC1L	chr6	73935144	-
5CDS-5UTR	ENST00000369536	ENST00000451316		TCGA	LD	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33703432	-
5CDS-5UTR	ENST00000369536	ENST00000293756		TCGA	LD	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33703432	-
intron-5UTR	ENST00000497828	ENST00000451316		TCGA	LD	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33703432	-
intron-5UTR	ENST00000497828	ENST00000293756		TCGA	LD	LIHC	TCGA-DD-A11D-01A	RARS2	chr6	88299640	-	IP6K3	chr6	33703432	-
In-frame	ENST00000356770	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000356770	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000356770	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000356770	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000356770	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
Frame-shit	ENST00000394830	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000394830	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000296302	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000296302	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000337303	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000337303	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000410007	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000410007	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409057	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000409057	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409114	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000409114	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000307092		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000307076		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000422318		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
In-frame	ENST00000409767	ENST00000459839		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-intron	ENST00000409767	ENST00000490681		TCGA	LD	LIHC	TCGA-DD-A1EA-01A	PBRM1	chr3	52702514	-	NT5DC2	chr3	52559311	-
5CDS-5UTR	ENST00000360663	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000360663	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000360663	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000360663	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000360663	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000360663	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394828	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394828	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394828	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394828	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394828	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000394828	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394829	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394829	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394829	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394829	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394829	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000394829	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000342558	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000342558	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000342558	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000342558	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000342558	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000342558	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000545874	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000545874	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000545874	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000545874	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000545874	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000545874	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394822	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394822	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394822	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394822	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000394822	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-intron	ENST00000394822	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000544628	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000544628	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000544628	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000544628	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000544628	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-intron	ENST00000544628	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000495897	ENST00000262291		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000495897	ENST00000537567		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000495897	ENST00000539763		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000495897	ENST00000536180		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-5UTR	ENST00000495897	ENST00000545362		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
intron-intron	ENST00000495897	ENST00000588617		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	PPP3CB	chr10	75227311	-	VMP1	chr17	57808782	+
5CDS-5UTR	ENST00000322244	ENST00000283916		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	UBA6	chr4	68566767	-	TMPRSS11D	chr4	68749743	-
5CDS-intron	ENST00000322244	ENST00000545541		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	UBA6	chr4	68566767	-	TMPRSS11D	chr4	68749743	-
5CDS-intron	ENST00000322244	ENST00000509584		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	UBA6	chr4	68566767	-	TMPRSS11D	chr4	68749743	-
5CDS-5UTR	ENST00000420827	ENST00000283916		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	UBA6	chr4	68566767	-	TMPRSS11D	chr4	68749743	-
5CDS-intron	ENST00000420827	ENST00000545541		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	UBA6	chr4	68566767	-	TMPRSS11D	chr4	68749743	-
5CDS-intron	ENST00000420827	ENST00000509584		TCGA	LD	LIHC	TCGA-DD-A1EB-01A	UBA6	chr4	68566767	-	TMPRSS11D	chr4	68749743	-
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-DD-A1EC-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5UTR-intron	ENST00000331872	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
5UTR-intron	ENST00000331872	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
intron-intron	ENST00000417584	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
intron-intron	ENST00000417584	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
5UTR-intron	ENST00000311223	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
5UTR-intron	ENST00000311223	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
intron-intron	ENST00000491322	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
intron-intron	ENST00000491322	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
intron-intron	ENST00000339526	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
intron-intron	ENST00000339526	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	GLUL	chr1	182360814	-	CYP3A4	chr7	99367858	-
5UTR-3CDS	ENST00000373424	ENST00000331872		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
5UTR-3CDS	ENST00000373424	ENST00000417584		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
5UTR-3CDS	ENST00000373424	ENST00000311223		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
5UTR-5UTR	ENST00000373424	ENST00000491322		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
5UTR-5UTR	ENST00000373424	ENST00000339526		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
3UTR-3CDS	ENST00000480628	ENST00000331872		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
3UTR-3CDS	ENST00000480628	ENST00000417584		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
3UTR-3CDS	ENST00000480628	ENST00000311223		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
3UTR-5UTR	ENST00000480628	ENST00000491322		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
3UTR-5UTR	ENST00000480628	ENST00000339526		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000305139	ENST00000331872		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000305139	ENST00000417584		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000305139	ENST00000311223		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-5UTR	ENST00000305139	ENST00000491322		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-5UTR	ENST00000305139	ENST00000339526		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000406651	ENST00000331872		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000406651	ENST00000417584		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-3CDS	ENST00000406651	ENST00000311223		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-5UTR	ENST00000406651	ENST00000491322		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
intron-5UTR	ENST00000406651	ENST00000339526		TCGA	LD	LIHC	TCGA-DD-A1EE-01A	UGT1A6	chr2	234600466	+	GLUL	chr1	182355537	-
In-frame	ENST00000373232	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
In-frame	ENST00000373232	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
In-frame	ENST00000373232	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-intron	ENST00000373232	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-5UTR	ENST00000373232	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-intron	ENST00000373232	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
In-frame	ENST00000608321	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
In-frame	ENST00000608321	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
In-frame	ENST00000608321	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-intron	ENST00000608321	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-5UTR	ENST00000608321	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-intron	ENST00000608321	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
intron-3CDS	ENST00000495346	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
intron-3CDS	ENST00000495346	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
intron-3CDS	ENST00000495346	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
intron-intron	ENST00000495346	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
intron-5UTR	ENST00000495346	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
intron-intron	ENST00000495346	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	PPA1	chr10	71993020	-	MICU1	chr10	74268027	-
5CDS-5UTR	ENST00000551109	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000551109	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000551109	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000352268	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000352268	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000352268	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000394313	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000394313	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000394313	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000338010	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000338010	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000338010	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000546970	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000546970	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000546970	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5UTR-5UTR	ENST00000552382	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5UTR-5UTR	ENST00000552382	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5UTR-5UTR	ENST00000552382	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000551771	ENST00000209875		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000551771	ENST00000439541		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
5CDS-5UTR	ENST00000551771	ENST00000550411		TCGA	LD	LIHC	TCGA-DD-A1EF-01A	ZNF385A	chr12	54767757	-	CBX5	chr12	54651476	-
In-frame	ENST00000233242	ENST00000316403		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000233242	ENST00000546343		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000233242	ENST00000560366		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000233242	ENST00000405140		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000233242	ENST00000523500		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000399256	ENST00000316403		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000399256	ENST00000546343		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000399256	ENST00000560366		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000399256	ENST00000405140		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
In-frame	ENST00000399256	ENST00000523500		TCGA	LD	LIHC	TCGA-DD-A1EH-01A	APOB	chr2	21252511	-	CLU	chr8	27456152	-
Frame-shit	ENST00000375608	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375608	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000375608	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375608	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375608	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375608	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000442652	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000442652	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000442652	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000442652	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000442652	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000442652	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375604	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375604	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000375604	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375604	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375604	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375604	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000397030	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000397030	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000397030	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000397030	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000397030	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000397030	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000535094	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000535094	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000535094	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000535094	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000535094	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000535094	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000421756	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000421756	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000421756	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000421756	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000421756	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000421756	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375601	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375601	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000375601	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375601	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375601	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375601	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000397036	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000397036	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-5UTR	ENST00000397036	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000397036	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000397036	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000397036	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000434480	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000434480	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000434480	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000434480	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000434480	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000434480	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000423482	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000423482	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000423482	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000423482	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000423482	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000423482	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375597	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000375597	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000375597	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375597	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375597	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000375597	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000397024	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
Frame-shit	ENST00000397024	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-5UTR	ENST00000397024	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000397024	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000397024	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
5CDS-intron	ENST00000397024	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000480321	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000480321	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-5UTR	ENST00000480321	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000480321	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000480321	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000480321	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000397021	ENST00000357389		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000397021	ENST00000327773		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-5UTR	ENST00000397021	ENST00000476291		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000397021	ENST00000418959		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000397021	ENST00000450766		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-intron	ENST00000397021	ENST00000355761		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	MCF2L	chr13	113669160	+	GAS6	chr13	114551023	-
intron-3CDS	ENST00000346141	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000346141	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-intron	ENST00000346141	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-intron	ENST00000346141	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000325752	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000325752	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000325752	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000325752	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000340993	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000340993	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000340993	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000340993	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000394239	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000394239	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000394239	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000394239	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
In-frame	ENST00000592426	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
In-frame	ENST00000592426	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000592426	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000592426	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
In-frame	ENST00000376094	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
In-frame	ENST00000376094	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000376094	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000376094	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000539018	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000539018	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000539018	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
5CDS-intron	ENST00000539018	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000591611	ENST00000300896		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-3CDS	ENST00000591611	ENST00000592339		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-intron	ENST00000591611	ENST00000393003		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
intron-intron	ENST00000591611	ENST00000586881		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	TUBD1	chr17	57955464	-	USP32	chr17	58300947	-
Frame-shit	ENST00000261427	ENST00000362026		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000261427	ENST00000339611		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000261427	ENST00000394785		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000261427	ENST00000503103		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000261427	ENST00000503230		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
5CDS-intron	ENST00000261427	ENST00000505838		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
intron-3CDS	ENST00000295963	ENST00000362026		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
intron-3CDS	ENST00000295963	ENST00000339611		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
intron-3CDS	ENST00000295963	ENST00000394785		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
intron-3CDS	ENST00000295963	ENST00000503103		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
intron-3CDS	ENST00000295963	ENST00000503230		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
intron-intron	ENST00000295963	ENST00000505838		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
3UTR-3CDS	ENST00000438068	ENST00000362026		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
3UTR-3CDS	ENST00000438068	ENST00000339611		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
3UTR-3CDS	ENST00000438068	ENST00000394785		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
3UTR-3CDS	ENST00000438068	ENST00000503103		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
3UTR-3CDS	ENST00000438068	ENST00000503230		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
3UTR-intron	ENST00000438068	ENST00000505838		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000503368	ENST00000362026		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000503368	ENST00000339611		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000503368	ENST00000394785		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000503368	ENST00000503103		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000503368	ENST00000503230		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
5CDS-intron	ENST00000503368	ENST00000505838		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000445950	ENST00000362026		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000445950	ENST00000339611		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000445950	ENST00000394785		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000445950	ENST00000503103		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
Frame-shit	ENST00000445950	ENST00000503230		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
5CDS-intron	ENST00000445950	ENST00000505838		TCGA	LD	LIHC	TCGA-DD-A1EJ-01A	UBE2K	chr4	39757359	+	SLC9B2	chr4	103952965	-
5UTR-3CDS	ENST00000222345	ENST00000382065		TCGA	LD	LIHC	TCGA-DD-A1EK-01A	SIPA1L3	chr19	38397998	+	C1QTNF3	chr5	34035863	-
5UTR-3CDS	ENST00000222345	ENST00000231338		TCGA	LD	LIHC	TCGA-DD-A1EK-01A	SIPA1L3	chr19	38397998	+	C1QTNF3	chr5	34035863	-
5UTR-intron	ENST00000222345	ENST00000513065		TCGA	LD	LIHC	TCGA-DD-A1EK-01A	SIPA1L3	chr19	38397998	+	C1QTNF3	chr5	34035863	-
intron-3CDS	ENST00000476317	ENST00000382065		TCGA	LD	LIHC	TCGA-DD-A1EK-01A	SIPA1L3	chr19	38397998	+	C1QTNF3	chr5	34035863	-
intron-3CDS	ENST00000476317	ENST00000231338		TCGA	LD	LIHC	TCGA-DD-A1EK-01A	SIPA1L3	chr19	38397998	+	C1QTNF3	chr5	34035863	-
intron-intron	ENST00000476317	ENST00000513065		TCGA	LD	LIHC	TCGA-DD-A1EK-01A	SIPA1L3	chr19	38397998	+	C1QTNF3	chr5	34035863	-
In-frame	ENST00000520309	ENST00000392328		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000520309	ENST00000281416		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000520309	ENST00000535751		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000520309	ENST00000489793		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000313581	ENST00000392328		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000313581	ENST00000281416		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000313581	ENST00000535751		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000313581	ENST00000489793		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000281412	ENST00000392328		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000281412	ENST00000281416		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000281412	ENST00000535751		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000281412	ENST00000489793		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000438402	ENST00000392328		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000438402	ENST00000281416		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000438402	ENST00000535751		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000438402	ENST00000489793		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000431575	ENST00000392328		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000431575	ENST00000281416		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
In-frame	ENST00000431575	ENST00000535751		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000431575	ENST00000489793		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
intron-3CDS	ENST00000461516	ENST00000392328		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
intron-3CDS	ENST00000461516	ENST00000281416		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
intron-3CDS	ENST00000461516	ENST00000535751		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
intron-intron	ENST00000461516	ENST00000489793		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	ANKAR	chr2	190561095	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000288368	ENST00000539993		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-intron	ENST00000288368	ENST00000518698		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-intron	ENST00000288368	ENST00000349492		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-intron	ENST00000288368	ENST00000523686		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-intron	ENST00000288368	ENST00000348340		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-intron	ENST00000288368	ENST00000337103		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-intron	ENST00000288368	ENST00000325233		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000539993		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000518698		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000349492		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000523686		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000348340		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000337103		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
intron-intron	ENST00000529398	ENST00000325233		TCGA	LD	LIHC	TCGA-DD-A1EL-01A	PREX2	chr8	69069671	+	C8orf34	chr8	69350081	+
5CDS-5UTR	ENST00000305046	ENST00000360526		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-5UTR	ENST00000305046	ENST00000422046		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-5UTR	ENST00000305046	ENST00000361503		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-intron	ENST00000305046	ENST00000566555		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-5UTR	ENST00000394887	ENST00000360526		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-5UTR	ENST00000394887	ENST00000422046		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-5UTR	ENST00000394887	ENST00000361503		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
5CDS-intron	ENST00000394887	ENST00000566555		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
intron-5UTR	ENST00000504498	ENST00000360526		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
intron-5UTR	ENST00000504498	ENST00000422046		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
intron-5UTR	ENST00000504498	ENST00000361503		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
intron-intron	ENST00000504498	ENST00000566555		TCGA	LD	LIHC	TCGA-DD-A39W-01A	ADH1B	chr4	100232678	-	CES1	chr16	55867008	-
Frame-shit	ENST00000545387	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000545387	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000545387	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000545387	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-3CDS	ENST00000402551	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-3CDS	ENST00000402551	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-intron	ENST00000402551	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-intron	ENST00000402551	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000316273	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000316273	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000316273	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000316273	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
intron-3CDS	ENST00000597011	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
intron-3CDS	ENST00000597011	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
intron-intron	ENST00000597011	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
intron-intron	ENST00000597011	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000599246	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000599246	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000599246	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000599246	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000598162	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
Frame-shit	ENST00000598162	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000598162	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5CDS-intron	ENST00000598162	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-3CDS	ENST00000601496	ENST00000405315		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-3CDS	ENST00000601496	ENST00000407032		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-intron	ENST00000601496	ENST00000485798		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
5UTR-intron	ENST00000601496	ENST00000263273		TCGA	LD	LIHC	TCGA-DD-A39X-01A	BCAT2	chr19	49314241	-	NUCB1	chr19	49414406	+
In-frame	ENST00000342694	ENST00000264717		TCGA	LD	LIHC	TCGA-DD-A39X-01A	NPR2	chr9	35799728	+	GCKR	chr2	27730548	+
In-frame	ENST00000342694	ENST00000424318		TCGA	LD	LIHC	TCGA-DD-A39X-01A	NPR2	chr9	35799728	+	GCKR	chr2	27730548	+
5CDS-intron	ENST00000395782	ENST00000410006		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395782	ENST00000410027		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395782	ENST00000417826		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395783	ENST00000410006		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395783	ENST00000410027		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395783	ENST00000417826		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000435340	ENST00000410006		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000435340	ENST00000410027		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000435340	ENST00000417826		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000255389	ENST00000410006		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000255389	ENST00000410027		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000255389	ENST00000417826		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395781	ENST00000410006		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395781	ENST00000410027		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000395781	ENST00000417826		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
intron-intron	ENST00000484838	ENST00000410006		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
intron-intron	ENST00000484838	ENST00000410027		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
intron-intron	ENST00000484838	ENST00000417826		TCGA	LD	LIHC	TCGA-DD-A39Y-01A	PEMT	chr17	17480234	-	CCDC103	chr17	42976752	+
5CDS-intron	ENST00000245907	ENST00000303657		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
5CDS-intron	ENST00000245907	ENST00000359161		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
5CDS-intron	ENST00000245907	ENST00000592546		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
5CDS-intron	ENST00000245907	ENST00000587700		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
intron-intron	ENST00000599668	ENST00000303657		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
intron-intron	ENST00000599668	ENST00000359161		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
intron-intron	ENST00000599668	ENST00000592546		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
intron-intron	ENST00000599668	ENST00000587700		TCGA	LD	LIHC	TCGA-DD-A3A1-01A	C3	chr19	6720527	-	RFX2	chr19	6078345	-
Frame-shit	ENST00000318602	ENST00000440909		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
Frame-shit	ENST00000318602	ENST00000448921		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
Frame-shit	ENST00000318602	ENST00000437397		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
Frame-shit	ENST00000318602	ENST00000355814		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
Frame-shit	ENST00000318602	ENST00000393087		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
In-frame	ENST00000318602	ENST00000393088		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
Frame-shit	ENST00000318602	ENST00000404814		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
Frame-shit	ENST00000318602	ENST00000449399		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5CDS-intron	ENST00000318602	ENST00000402629		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5CDS-intron	ENST00000318602	ENST00000555289		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000440909		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000448921		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000437397		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000355814		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000393087		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000393088		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000404814		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-3CDS	ENST00000542567	ENST00000449399		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-intron	ENST00000542567	ENST00000402629		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5UTR-intron	ENST00000542567	ENST00000555289		TCGA	LD	LIHC	TCGA-DD-A3A3-01A	A2M	chr12	9232690	-	SERPINA1	chr14	94844977	-
5CDS-5UTR	ENST00000257963	ENST00000388922		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000257963	ENST00000550683		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000257963	ENST00000419526		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-intron	ENST00000257963	ENST00000550084		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000541224	ENST00000388922		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000541224	ENST00000550683		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000541224	ENST00000419526		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-intron	ENST00000541224	ENST00000550084		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000426655	ENST00000388922		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000426655	ENST00000550683		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000426655	ENST00000419526		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-intron	ENST00000426655	ENST00000550084		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000415850	ENST00000388922		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000415850	ENST00000550683		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000415850	ENST00000419526		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-intron	ENST00000415850	ENST00000550084		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-5UTR	ENST00000542485	ENST00000388922		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-5UTR	ENST00000542485	ENST00000550683		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-5UTR	ENST00000542485	ENST00000419526		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-intron	ENST00000542485	ENST00000550084		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-5UTR	ENST00000563121	ENST00000388922		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-5UTR	ENST00000563121	ENST00000550683		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-5UTR	ENST00000563121	ENST00000419526		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
intron-intron	ENST00000563121	ENST00000550084		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	ACVR1B	chr12	52345618	+	ACVRL1	chr12	52306254	+
5CDS-5UTR	ENST00000291670	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000291670	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5UTR-5UTR	ENST00000498355	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5UTR-5UTR	ENST00000498355	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000397748	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000397748	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000359679	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000359679	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000355384	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000355384	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000397743	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000397743	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000397746	ENST00000330205		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000397746	ENST00000291672		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	FTCD	chr21	47574063	-	SPATC1L	chr21	47588572	-
intron-intron	ENST00000543376	ENST00000156471		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	GOLGA8A	chr15	34697118	-	AQR	chr15	35144268	-
intron-intron	ENST00000432566	ENST00000156471		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	GOLGA8A	chr15	34697118	-	AQR	chr15	35144268	-
5UTR-intron	ENST00000360553	ENST00000156471		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	GOLGA8A	chr15	34697118	-	AQR	chr15	35144268	-
intron-intron	ENST00000359187	ENST00000156471		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	GOLGA8A	chr15	34697118	-	AQR	chr15	35144268	-
intron-intron	ENST00000565885	ENST00000156471		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	GOLGA8A	chr15	34697118	-	AQR	chr15	35144268	-
5CDS-intron	ENST00000233809	ENST00000491306		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
5CDS-intron	ENST00000233809	ENST00000600880		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
5CDS-intron	ENST00000233809	ENST00000446558		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
5CDS-intron	ENST00000233809	ENST00000456586		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
5CDS-intron	ENST00000233809	ENST00000598925		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
5CDS-intron	ENST00000233809	ENST00000427280		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
5CDS-intron	ENST00000233809	ENST00000441179		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000491306		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000600880		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000446558		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000456586		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000598925		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000427280		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
intron-intron	ENST00000456764	ENST00000441179		TCGA	LD	LIHC	TCGA-DD-A3A5-01A	IGFBP2	chr2	217498688	+	RPL37A	chr2	217385437	+
Frame-shit	ENST00000307741	ENST00000291670		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000307741	ENST00000498355		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000307741	ENST00000397748		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000307741	ENST00000359679		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000307741	ENST00000355384		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000307741	ENST00000397743		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000307741	ENST00000397746		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
Frame-shit	ENST00000586677	ENST00000291670		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000586677	ENST00000498355		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000586677	ENST00000397748		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000586677	ENST00000359679		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000586677	ENST00000355384		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000586677	ENST00000397743		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-5UTR	ENST00000586677	ENST00000397746		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-3CDS	ENST00000591149	ENST00000291670		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000591149	ENST00000498355		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000591149	ENST00000397748		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000591149	ENST00000359679		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000591149	ENST00000355384		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000591149	ENST00000397743		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000591149	ENST00000397746		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-3CDS	ENST00000395212	ENST00000291670		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000395212	ENST00000498355		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000395212	ENST00000397748		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000395212	ENST00000359679		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000395212	ENST00000355384		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000395212	ENST00000397743		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
intron-5UTR	ENST00000395212	ENST00000397746		TCGA	LD	LIHC	TCGA-DD-A3A8-01A	THOP1	chr19	2799789	+	FTCD	chr21	47557248	-
5CDS-3UTR	ENST00000413366	ENST00000570478		TCGA	LD	LIHC	TCGA-DD-A3A9-01A	PRKCA	chr17	64302245	+	LRRC37A17P	chr17	45099216	+
3UTR-3UTR	ENST00000583361	ENST00000570478		TCGA	LD	LIHC	TCGA-DD-A3A9-01A	PRKCA	chr17	64302245	+	LRRC37A17P	chr17	45099216	+
Frame-shit	ENST00000378454	ENST00000230036		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24437517	-
5CDS-intron	ENST00000378454	ENST00000474784		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24437517	-
intron-3CDS	ENST00000378450	ENST00000230036		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24437517	-
intron-intron	ENST00000378450	ENST00000474784		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24437517	-
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5UTR-3CDS	ENST00000262879	ENST00000217407		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	RALGAPB	chr20	37101712	+	LBP	chr20	36999924	+
5UTR-3CDS	ENST00000397042	ENST00000217407		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	RALGAPB	chr20	37101712	+	LBP	chr20	36999924	+
5UTR-3CDS	ENST00000397038	ENST00000217407		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	RALGAPB	chr20	37101712	+	LBP	chr20	36999924	+
5UTR-3CDS	ENST00000537204	ENST00000217407		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	RALGAPB	chr20	37101712	+	LBP	chr20	36999924	+
intron-3CDS	ENST00000397040	ENST00000217407		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	RALGAPB	chr20	37101712	+	LBP	chr20	36999924	+
intron-3CDS	ENST00000490114	ENST00000217407		TCGA	LD	LIHC	TCGA-DD-A4NA-01A	RALGAPB	chr20	37101712	+	LBP	chr20	36999924	+
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-DD-A4NB-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-3UTR	ENST00000355303	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
5CDS-3UTR	ENST00000398543	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
5CDS-3UTR	ENST00000538023	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
5CDS-3UTR	ENST00000316296	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
5CDS-3UTR	ENST00000530676	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
5CDS-3UTR	ENST00000531349	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
intron-3UTR	ENST00000525494	ENST00000496593		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	ANO1	chr11	69999234	+	RPLP0P2	chr11	61403601	+
5CDS-3UTR	ENST00000398645	ENST00000505455		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66986874	+	ADAM5	chr8	39274733	+
5CDS-3UTR	ENST00000529006	ENST00000505455		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66986874	+	ADAM5	chr8	39274733	+
3UTR-3UTR	ENST00000526258	ENST00000505455		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66986874	+	ADAM5	chr8	39274733	+
intron-3UTR	ENST00000308783	ENST00000505455		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66986874	+	ADAM5	chr8	39274733	+
intron-3UTR	ENST00000530342	ENST00000505455		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66986874	+	ADAM5	chr8	39274733	+
Frame-shit	ENST00000398645	ENST00000322776		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000398645	ENST00000532303		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000398645	ENST00000529927		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000398645	ENST00000415352		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000398645	ENST00000526169		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
Frame-shit	ENST00000529006	ENST00000322776		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529006	ENST00000532303		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529006	ENST00000529927		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529006	ENST00000415352		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000529006	ENST00000526169		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-3CDS	ENST00000526258	ENST00000322776		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000526258	ENST00000532303		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000526258	ENST00000529927		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000526258	ENST00000415352		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000526258	ENST00000526169		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-3CDS	ENST00000308783	ENST00000322776		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000308783	ENST00000532303		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000308783	ENST00000529927		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000308783	ENST00000415352		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000308783	ENST00000526169		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-3CDS	ENST00000530342	ENST00000322776		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000530342	ENST00000532303		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000530342	ENST00000529927		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000530342	ENST00000415352		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
intron-intron	ENST00000530342	ENST00000526169		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	KDM2A	chr11	66949363	+	NDUFV1	chr11	67375867	+
5CDS-intron	ENST00000265686	ENST00000390168		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	TCIRG1	chr11	67811374	+	H19	chr11	2018505	-
5CDS-intron	ENST00000532635	ENST00000390168		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	TCIRG1	chr11	67811374	+	H19	chr11	2018505	-
intron-intron	ENST00000530802	ENST00000390168		TCGA	LD	LIHC	TCGA-DD-A4ND-01A	TCIRG1	chr11	67811374	+	H19	chr11	2018505	-
5CDS-5UTR	ENST00000229812	ENST00000373715		TCGA	LD	LIHC	TCGA-DD-A4NE-01A	STK38	chr6	36483115	-	SRSF3	chr6	36564538	+
5CDS-5UTR	ENST00000229812	ENST00000339436		TCGA	LD	LIHC	TCGA-DD-A4NE-01A	STK38	chr6	36483115	-	SRSF3	chr6	36564538	+
5CDS-5UTR	ENST00000354883	ENST00000555699		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000354883	ENST00000334869		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000354883	ENST00000557434		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000354883	ENST00000393218		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-intron	ENST00000354883	ENST00000557034		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000336733	ENST00000555699		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000336733	ENST00000334869		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000336733	ENST00000557434		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000336733	ENST00000393218		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-intron	ENST00000336733	ENST00000557034		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000536651	ENST00000555699		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000536651	ENST00000334869		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000536651	ENST00000557434		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000536651	ENST00000393218		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-intron	ENST00000536651	ENST00000557034		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000413054	ENST00000555699		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000413054	ENST00000334869		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000413054	ENST00000557434		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000413054	ENST00000393218		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
5CDS-intron	ENST00000413054	ENST00000557034		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000484768	ENST00000555699		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000484768	ENST00000334869		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000484768	ENST00000557434		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-5UTR	ENST00000484768	ENST00000393218		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
3UTR-intron	ENST00000484768	ENST00000557034		TCGA	LD	LIHC	TCGA-DD-A4NG-01A	SLC25A26	chr3	66313803	+	LGMN	chr14	93199160	-
Frame-shit	ENST00000265132	ENST00000259396		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	AMBP	chr9	116835205	-	ORM1	chr9	117088572	+
5CDS-intron	ENST00000265132	ENST00000538816		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	AMBP	chr9	116835205	-	ORM1	chr9	117088572	+
5CDS-intron	ENST00000265132	ENST00000477456		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	AMBP	chr9	116835205	-	ORM1	chr9	117088572	+
In-frame	ENST00000381340	ENST00000542838		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
5CDS-3UTR	ENST00000381340	ENST00000251758		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
5CDS-3UTR	ENST00000381340	ENST00000407793		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
5CDS-3UTR	ENST00000381340	ENST00000228264		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
5CDS-3UTR	ENST00000381340	ENST00000545668		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
5CDS-3UTR	ENST00000381340	ENST00000350437		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
5CDS-intron	ENST00000381340	ENST00000539673		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3CDS	ENST00000545902	ENST00000542838		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000545902	ENST00000251758		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000545902	ENST00000407793		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000545902	ENST00000228264		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000545902	ENST00000545668		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000545902	ENST00000350437		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-intron	ENST00000545902	ENST00000539673		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3CDS	ENST00000242737	ENST00000542838		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000242737	ENST00000251758		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000242737	ENST00000407793		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000242737	ENST00000228264		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000242737	ENST00000545668		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-3UTR	ENST00000242737	ENST00000350437		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
intron-intron	ENST00000242737	ENST00000539673		TCGA	LD	LIHC	TCGA-DD-A4NH-01A	ITPR2	chr12	26774056	-	DDX11	chr12	31256251	+
In-frame	ENST00000557325	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
In-frame	ENST00000557325	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
In-frame	ENST00000557325	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
5CDS-intron	ENST00000557325	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
5CDS-intron	ENST00000557325	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
5CDS-intron	ENST00000557325	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
Frame-shit	ENST00000334696	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
Frame-shit	ENST00000334696	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
Frame-shit	ENST00000334696	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
5CDS-intron	ENST00000334696	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
5CDS-intron	ENST00000334696	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
5CDS-intron	ENST00000334696	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-3CDS	ENST00000556242	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-3CDS	ENST00000556242	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-3CDS	ENST00000556242	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-intron	ENST00000556242	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-intron	ENST00000556242	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-intron	ENST00000556242	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-3CDS	ENST00000554664	ENST00000401998		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-3CDS	ENST00000554664	ENST00000361114		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-3CDS	ENST00000554664	ENST00000398761		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-intron	ENST00000554664	ENST00000418483		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-intron	ENST00000554664	ENST00000398763		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
intron-intron	ENST00000554664	ENST00000604025		TCGA	LD	LIHC	TCGA-DD-A4NN-01A	ENTPD5	chr14	74436713	-	MICU1	chr10	74311099	-
In-frame	ENST00000463117	ENST00000409839		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
In-frame	ENST00000463117	ENST00000393878		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
In-frame	ENST00000463117	ENST00000305165		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
In-frame	ENST00000252945	ENST00000409839		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
In-frame	ENST00000252945	ENST00000393878		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
In-frame	ENST00000252945	ENST00000305165		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
intron-3CDS	ENST00000480558	ENST00000409839		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
intron-3CDS	ENST00000480558	ENST00000393878		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
intron-3CDS	ENST00000480558	ENST00000305165		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	CYP2E1	chr10	135341076	+	REG3A	chr2	79384824	-
Frame-shit	ENST00000367698	ENST00000570083		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
Frame-shit	ENST00000367698	ENST00000355906		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
Frame-shit	ENST00000367698	ENST00000398131		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
Frame-shit	ENST00000367698	ENST00000569639		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
Frame-shit	ENST00000367698	ENST00000357763		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
Frame-shit	ENST00000367698	ENST00000562526		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5CDS-intron	ENST00000367698	ENST00000565574		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-3CDS	ENST00000494024	ENST00000570083		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-3CDS	ENST00000494024	ENST00000355906		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-3CDS	ENST00000494024	ENST00000398131		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-3CDS	ENST00000494024	ENST00000569639		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-3CDS	ENST00000494024	ENST00000357763		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-3CDS	ENST00000494024	ENST00000562526		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
5UTR-intron	ENST00000494024	ENST00000565574		TCGA	LD	LIHC	TCGA-DD-A4NP-01A	SERPINC1	chr1	173883691	-	HP	chr16	72093016	+
In-frame	ENST00000374855	ENST00000245907		TCGA	LD	LIHC	TCGA-DD-A4NV-01A	ALDOB	chr9	104190751	-	C3	chr19	6713520	-
5CDS-intron	ENST00000374855	ENST00000599668		TCGA	LD	LIHC	TCGA-DD-A4NV-01A	ALDOB	chr9	104190751	-	C3	chr19	6713520	-
intron-3CDS	ENST00000468981	ENST00000245907		TCGA	LD	LIHC	TCGA-DD-A4NV-01A	ALDOB	chr9	104190751	-	C3	chr19	6713520	-
intron-intron	ENST00000468981	ENST00000599668		TCGA	LD	LIHC	TCGA-DD-A4NV-01A	ALDOB	chr9	104190751	-	C3	chr19	6713520	-
3UTR-3CDS	ENST00000361970	ENST00000570083		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
3UTR-3CDS	ENST00000361970	ENST00000355906		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
3UTR-3CDS	ENST00000361970	ENST00000398131		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
3UTR-intron	ENST00000361970	ENST00000569639		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
3UTR-intron	ENST00000361970	ENST00000357763		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
3UTR-3UTR	ENST00000361970	ENST00000562526		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
3UTR-3UTR	ENST00000361970	ENST00000565574		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-3CDS	ENST00000388827	ENST00000570083		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-3CDS	ENST00000388827	ENST00000355906		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-3CDS	ENST00000388827	ENST00000398131		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-intron	ENST00000388827	ENST00000569639		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-intron	ENST00000388827	ENST00000357763		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-3UTR	ENST00000388827	ENST00000562526		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
intron-3UTR	ENST00000388827	ENST00000565574		TCGA	LD	LIHC	TCGA-DD-A73C-01A	CCDC152	chr5	42801243	+	HP	chr16	72094658	+
Frame-shit	ENST00000440909	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000440909	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000440909	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
Frame-shit	ENST00000448921	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000448921	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000448921	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
Frame-shit	ENST00000437397	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000437397	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000437397	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
Frame-shit	ENST00000355814	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000355814	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000355814	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
Frame-shit	ENST00000393087	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000393087	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000393087	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
In-frame	ENST00000393088	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000393088	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000393088	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
In-frame	ENST00000404814	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000404814	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000404814	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
In-frame	ENST00000449399	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000449399	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000449399	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
Frame-shit	ENST00000402629	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-5UTR	ENST00000402629	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
5CDS-3UTR	ENST00000402629	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
intron-3CDS	ENST00000555289	ENST00000402696		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
intron-5UTR	ENST00000555289	ENST00000264998		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
intron-3UTR	ENST00000555289	ENST00000475382		TCGA	LD	LIHC	TCGA-DD-A73C-01A	SERPINA1	chr14	94848929	-	TF	chr3	133472439	+
Frame-shit	ENST00000402696	ENST00000369406		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
Frame-shit	ENST00000402696	ENST00000544913		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
5CDS-intron	ENST00000402696	ENST00000476640		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
Frame-shit	ENST00000264998	ENST00000369406		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
Frame-shit	ENST00000264998	ENST00000544913		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
5CDS-intron	ENST00000264998	ENST00000476640		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
intron-3CDS	ENST00000475382	ENST00000369406		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
intron-3CDS	ENST00000475382	ENST00000544913		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
intron-intron	ENST00000475382	ENST00000476640		TCGA	LD	LIHC	TCGA-DD-A73C-01A	TF	chr3	133473515	+	HMGCS2	chr1	120293531	-
5CDS-5UTR	ENST00000395792	ENST00000322213		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
5CDS-intron	ENST00000395792	ENST00000469129		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
5CDS-5UTR	ENST00000395792	ENST00000375340		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
5CDS-5UTR	ENST00000226359	ENST00000322213		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
5CDS-intron	ENST00000226359	ENST00000469129		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
5CDS-5UTR	ENST00000226359	ENST00000375340		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
intron-5UTR	ENST00000506820	ENST00000322213		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
intron-intron	ENST00000506820	ENST00000469129		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
intron-5UTR	ENST00000506820	ENST00000375340		TCGA	LD	LIHC	TCGA-DD-A73F-01A	AFP	chr4	74313259	+	SMC1A	chrX	53449595	-
5UTR-3CDS	ENST00000335185	ENST00000341049		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000335185	ENST00000393470		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000335185	ENST00000405348		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000335185	ENST00000393468		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000335185	ENST00000393467		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000534415	ENST00000341049		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000534415	ENST00000393470		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000534415	ENST00000405348		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000534415	ENST00000393468		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000534415	ENST00000393467		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000531481	ENST00000341049		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000531481	ENST00000393470		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000531481	ENST00000405348		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000531481	ENST00000393468		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
intron-3CDS	ENST00000531481	ENST00000393467		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CCDC73	chr11	32816159	-	CAV1	chr7	116199000	+
5CDS-5UTR	ENST00000221455	ENST00000356757		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000221455	ENST00000336655		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000221455	ENST00000497775		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000391953	ENST00000356757		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000391953	ENST00000336655		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000391953	ENST00000497775		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000544944	ENST00000356757		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000544944	ENST00000336655		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000544944	ENST00000497775		TCGA	LD	LIHC	TCGA-DD-A73F-01A	CLASRP	chr19	45563885	+	TMEM217	chr6	37186817	-
5UTR-5UTR	ENST00000359543	ENST00000572980		TCGA	LD	LIHC	TCGA-DD-A73F-01A	EMP2	chr16	10674406	-	TVP23A	chr16	10868953	-
5UTR-5UTR	ENST00000359543	ENST00000299866		TCGA	LD	LIHC	TCGA-DD-A73F-01A	EMP2	chr16	10674406	-	TVP23A	chr16	10868953	-
intron-5UTR	ENST00000566033	ENST00000572980		TCGA	LD	LIHC	TCGA-DD-A73F-01A	EMP2	chr16	10674406	-	TVP23A	chr16	10868953	-
intron-5UTR	ENST00000566033	ENST00000299866		TCGA	LD	LIHC	TCGA-DD-A73F-01A	EMP2	chr16	10674406	-	TVP23A	chr16	10868953	-
intron-5UTR	ENST00000536829	ENST00000572980		TCGA	LD	LIHC	TCGA-DD-A73F-01A	EMP2	chr16	10674406	-	TVP23A	chr16	10868953	-
intron-5UTR	ENST00000536829	ENST00000299866		TCGA	LD	LIHC	TCGA-DD-A73F-01A	EMP2	chr16	10674406	-	TVP23A	chr16	10868953	-
intron-intron	ENST00000367412	ENST00000512372		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000367980		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-5UTR	ENST00000367412	ENST00000367983		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000437437		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000479324		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000442691		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000412844		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000428574		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000505005		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000508740		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000367982		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000508387		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000511944		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000504010		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000511748		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000511676		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000502985		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000367981		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000515621		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000367984		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000367985		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000367979		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000367412	ENST00000506209		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-5UTR	ENST00000367412	ENST00000515452		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000512372		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000367980		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-5UTR	ENST00000490002	ENST00000367983		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000437437		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000479324		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000442691		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000412844		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000428574		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000505005		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000508740		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000367982		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000508387		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000511944		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000504010		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000511748		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000511676		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000502985		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000367981		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000515621		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000367984		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000367985		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000367979		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-intron	ENST00000490002	ENST00000506209		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
intron-5UTR	ENST00000490002	ENST00000515452		TCGA	LD	LIHC	TCGA-DD-A73F-01A	F13B	chr1	197009800	-	NR1I3	chr1	161207995	-
Frame-shit	ENST00000307968	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
In-frame	ENST00000307968	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
Frame-shit	ENST00000307954	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
In-frame	ENST00000307954	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
Frame-shit	ENST00000510461	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
In-frame	ENST00000510461	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
Frame-shit	ENST00000511848	ENST00000354593		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
In-frame	ENST00000511848	ENST00000336411		TCGA	LD	LIHC	TCGA-DD-A73F-01A	FNIP1	chr5	131132523	-	CYP3A4	chr7	99355851	-
5UTR-3CDS	ENST00000378609	ENST00000283033		TCGA	LD	LIHC	TCGA-DD-A73F-01A	GNB1	chr1	1822259	-	TXNDC11	chr16	11778101	-
5UTR-3CDS	ENST00000378609	ENST00000356957		TCGA	LD	LIHC	TCGA-DD-A73F-01A	GNB1	chr1	1822259	-	TXNDC11	chr16	11778101	-
5UTR-5UTR	ENST00000378609	ENST00000570917		TCGA	LD	LIHC	TCGA-DD-A73F-01A	GNB1	chr1	1822259	-	TXNDC11	chr16	11778101	-
5UTR-3CDS	ENST00000472614	ENST00000283033		TCGA	LD	LIHC	TCGA-DD-A73F-01A	GNB1	chr1	1822259	-	TXNDC11	chr16	11778101	-
5UTR-3CDS	ENST00000472614	ENST00000356957		TCGA	LD	LIHC	TCGA-DD-A73F-01A	GNB1	chr1	1822259	-	TXNDC11	chr16	11778101	-
5UTR-5UTR	ENST00000472614	ENST00000570917		TCGA	LD	LIHC	TCGA-DD-A73F-01A	GNB1	chr1	1822259	-	TXNDC11	chr16	11778101	-
intron-3CDS	ENST00000465878	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000465878	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000465878	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000465878	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000379655	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000379655	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000379655	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000379655	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000445690	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000445690	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000445690	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000445690	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000421376	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000421376	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000421376	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000421376	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000541240	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000541240	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000541240	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000541240	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000540079	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000540079	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000540079	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000540079	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000543930	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000543930	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000543930	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000543930	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000562903	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000562903	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000562903	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000562903	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000539578	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000539578	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000539578	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000539578	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000566975	ENST00000564448		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-3CDS	ENST00000566975	ENST00000251102		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000566975	ENST00000564654		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
intron-intron	ENST00000566975	ENST00000311183		TCGA	LD	LIHC	TCGA-DD-A73F-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57931818	-
5CDS-intron	ENST00000580974	ENST00000381337		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000580974	ENST00000431224		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000580974	ENST00000396083		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000299954	ENST00000381337		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000299954	ENST00000431224		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000299954	ENST00000396083		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000335257	ENST00000381337		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000335257	ENST00000431224		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000335257	ENST00000396083		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000581322	ENST00000381337		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000581322	ENST00000431224		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
5CDS-intron	ENST00000581322	ENST00000396083		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PITPNC1	chr17	65374318	+	THUMPD1	chr16	20715231	-
Frame-shit	ENST00000413366	ENST00000265080		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRKCA	chr17	64302245	+	RASGRF2	chr5	80338696	+
5CDS-intron	ENST00000413366	ENST00000502677		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRKCA	chr17	64302245	+	RASGRF2	chr5	80338696	+
3UTR-3CDS	ENST00000583361	ENST00000265080		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRKCA	chr17	64302245	+	RASGRF2	chr5	80338696	+
3UTR-intron	ENST00000583361	ENST00000502677		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRKCA	chr17	64302245	+	RASGRF2	chr5	80338696	+
Frame-shit	ENST00000257836	ENST00000419147		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRRG4	chr11	32861785	+	CROT	chr7	87027840	+
5CDS-intron	ENST00000257836	ENST00000412227		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRRG4	chr11	32861785	+	CROT	chr7	87027840	+
5CDS-intron	ENST00000257836	ENST00000331536		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRRG4	chr11	32861785	+	CROT	chr7	87027840	+
5CDS-intron	ENST00000257836	ENST00000442291		TCGA	LD	LIHC	TCGA-DD-A73F-01A	PRRG4	chr11	32861785	+	CROT	chr7	87027840	+
5CDS-5UTR	ENST00000393844	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393844	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393844	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393844	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393844	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000313248	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000313248	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000313248	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000313248	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000313248	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000427851	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000427851	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000427851	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000427851	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000427851	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371740	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371740	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371740	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371740	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371740	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371755	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371755	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371755	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371755	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371755	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371731	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371731	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371731	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371731	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371731	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393841	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393841	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393841	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393841	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000393841	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371713	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371713	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371713	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371713	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371713	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371724	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371724	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371724	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371724	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371724	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371708	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371708	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371708	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371708	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
5CDS-5UTR	ENST00000371708	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
intron-5UTR	ENST00000472176	ENST00000259460		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
intron-5UTR	ENST00000472176	ENST00000394125		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
intron-5UTR	ENST00000472176	ENST00000373544		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
intron-5UTR	ENST00000472176	ENST00000394124		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
intron-5UTR	ENST00000472176	ENST00000373538		TCGA	LD	LIHC	TCGA-DD-A73F-01A	SLC29A1	chr6	44195079	+	RABEPK	chr9	127963059	+
In-frame	ENST00000215794	ENST00000261891		TCGA	LD	LIHC	TCGA-DD-A73F-01A	USP18	chr22	18643035	+	DAPK2	chr15	64275953	-
In-frame	ENST00000215794	ENST00000457488		TCGA	LD	LIHC	TCGA-DD-A73F-01A	USP18	chr22	18643035	+	DAPK2	chr15	64275953	-
In-frame	ENST00000215794	ENST00000558069		TCGA	LD	LIHC	TCGA-DD-A73F-01A	USP18	chr22	18643035	+	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000215794	ENST00000558482		TCGA	LD	LIHC	TCGA-DD-A73F-01A	USP18	chr22	18643035	+	DAPK2	chr15	64275953	-
5CDS-5UTR	ENST00000446906	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000446906	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000446906	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000377072	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000377072	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000377072	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000307729	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000307729	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000307729	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000377059	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000377059	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000377059	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000495130	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-intron	ENST00000495130	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000495130	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377100	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377100	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377100	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377091	ENST00000449193		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-intron	ENST00000377091	ENST00000444772		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000377091	ENST00000487107		TCGA	LD	LIHC	TCGA-DD-A73G-01A	MLLT10	chr10	21906136	+	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000372084	ENST00000262746		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000372084	ENST00000319248		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000372084	ENST00000372079		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000372084	ENST00000483583		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000262746		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000319248		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000372079		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000483583		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000262746		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000319248		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000372079		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000483583		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000262746		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000319248		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000372079		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000483583		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000262746		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000319248		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000372079		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000483583		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000262746		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000319248		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000372079		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000483583		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5CDS-3UTR	ENST00000344204	ENST00000508179		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TRIO	chr5	14420130	+	SNHG18	chr5	9549102	+
5CDS-3UTR	ENST00000537187	ENST00000508179		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TRIO	chr5	14420130	+	SNHG18	chr5	9549102	+
intron-3UTR	ENST00000509967	ENST00000508179		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TRIO	chr5	14420130	+	SNHG18	chr5	9549102	+
intron-3UTR	ENST00000515710	ENST00000508179		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TRIO	chr5	14420130	+	SNHG18	chr5	9549102	+
intron-3UTR	ENST00000344135	ENST00000508179		TCGA	LD	LIHC	TCGA-DD-A73G-01A	TRIO	chr5	14420130	+	SNHG18	chr5	9549102	+
In-frame	ENST00000369061	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369061	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369061	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369061	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369061	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000369061	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000357555	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000357555	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000357555	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000357555	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000357555	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000357555	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000358487	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000358487	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000358487	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000358487	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000358487	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000358487	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000356226	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000356226	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000356226	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000356226	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000356226	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000356226	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369060	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369060	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369060	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369060	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369060	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000369060	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369059	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369059	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369059	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369059	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000369059	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000369059	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000346997	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000346997	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000346997	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000346997	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000346997	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000346997	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000457416	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000457416	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000457416	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000457416	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000457416	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000457416	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000351936	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000351936	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000351936	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000351936	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000351936	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000351936	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000360144	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000360144	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000360144	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000360144	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000360144	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000360144	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369056	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369056	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369056	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369056	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
In-frame	ENST00000369056	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000369056	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000490349	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000490349	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000490349	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000490349	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000490349	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-intron	ENST00000490349	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000359354	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000359354	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000359354	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000359354	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-3CDS	ENST00000359354	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
intron-intron	ENST00000359354	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000478859	ENST00000351205		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000478859	ENST00000503079		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000478859	ENST00000380707		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000478859	ENST00000514951		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
Frame-shit	ENST00000478859	ENST00000506163		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000478859	ENST00000510679		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	FGFR2	chr10	123243212	-	SMN1	chr5	70234666	+
5CDS-intron	ENST00000351205	ENST00000369061		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000357555		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000358487		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000356226		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000369060		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000369059		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000346997		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000457416		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000351936		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000360144		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000369056		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000490349		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000359354		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000351205	ENST00000478859		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000369061		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000357555		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000358487		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000356226		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000369060		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000369059		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000346997		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000457416		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000351936		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000360144		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000369056		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000490349		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000359354		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000503079	ENST00000478859		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000369061		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000357555		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000358487		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000356226		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000369060		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000369059		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000346997		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000457416		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000351936		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000360144		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000369056		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000490349		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000359354		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000380707	ENST00000478859		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000369061		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000357555		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000358487		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000356226		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000369060		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000369059		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000346997		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000457416		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000351936		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000360144		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000369056		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000490349		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000359354		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000514951	ENST00000478859		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000369061		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000357555		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000358487		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000356226		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000369060		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000369059		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000346997		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000457416		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000351936		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000360144		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000369056		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000490349		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000359354		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
5CDS-intron	ENST00000506163	ENST00000478859		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000369061		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000357555		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000358487		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000356226		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000369060		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000369059		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000346997		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000457416		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000351936		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000360144		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000369056		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000490349		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000359354		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
intron-intron	ENST00000510679	ENST00000478859		TCGA	LD	LIHC	TCGA-DD-AA3A-01A	SMN1	chr5	70221011	+	FGFR2	chr10	123239627	-
In-frame	ENST00000451429	ENST00000374379		TCGA	LD	LIHC	TCGA-DD-AACD-01A	CEP85	chr1	26566329	+	CLIC4	chr1	25166351	+
5CDS-3UTR	ENST00000451429	ENST00000497755		TCGA	LD	LIHC	TCGA-DD-AACD-01A	CEP85	chr1	26566329	+	CLIC4	chr1	25166351	+
In-frame	ENST00000252992	ENST00000374379		TCGA	LD	LIHC	TCGA-DD-AACD-01A	CEP85	chr1	26566329	+	CLIC4	chr1	25166351	+
5CDS-3UTR	ENST00000252992	ENST00000497755		TCGA	LD	LIHC	TCGA-DD-AACD-01A	CEP85	chr1	26566329	+	CLIC4	chr1	25166351	+
intron-3CDS	ENST00000469609	ENST00000374379		TCGA	LD	LIHC	TCGA-DD-AACD-01A	CEP85	chr1	26566329	+	CLIC4	chr1	25166351	+
intron-3UTR	ENST00000469609	ENST00000497755		TCGA	LD	LIHC	TCGA-DD-AACD-01A	CEP85	chr1	26566329	+	CLIC4	chr1	25166351	+
5CDS-intron	ENST00000486483	ENST00000356539		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000486483	ENST00000470811		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000486483	ENST00000477399		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000486483	ENST00000489350		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000486483	ENST00000491763		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000486483	ENST00000498839		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000486483	ENST00000483177		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000356539		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000470811		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000477399		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000489350		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000491763		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000498839		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000295924	ENST00000483177		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000356539		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000470811		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000477399		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000489350		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000491763		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000498839		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000461166	ENST00000483177		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000356539		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000470811		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000477399		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000489350		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000491763		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000498839		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
5CDS-intron	ENST00000542783	ENST00000483177		TCGA	LD	LIHC	TCGA-DD-AACD-01A	TIPARP	chr3	156413814	+	LEKR1	chr3	156606086	+
Frame-shit	ENST00000548567	ENST00000394023		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
Frame-shit	ENST00000548567	ENST00000550164		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
Frame-shit	ENST00000548567	ENST00000347471		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
Frame-shit	ENST00000548567	ENST00000267064		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
5CDS-intron	ENST00000548567	ENST00000550859		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000351328	ENST00000394023		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000351328	ENST00000550164		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000351328	ENST00000347471		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000351328	ENST00000267064		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
5CDS-intron	ENST00000351328	ENST00000550859		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000542324	ENST00000394023		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000542324	ENST00000550164		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000542324	ENST00000347471		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
In-frame	ENST00000542324	ENST00000267064		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
5CDS-intron	ENST00000542324	ENST00000550859		TCGA	LD	LIHC	TCGA-DD-AACE-01A	CS	chr12	56679700	-	SMARCC2	chr12	56565721	-
intron-3CDS	ENST00000361368	ENST00000399044		TCGA	LD	LIHC	TCGA-DD-AACH-01A	SMURF1	chr7	98678698	-	CDRT15L2	chr17	20483462	+
intron-3CDS	ENST00000361125	ENST00000399044		TCGA	LD	LIHC	TCGA-DD-AACH-01A	SMURF1	chr7	98678698	-	CDRT15L2	chr17	20483462	+
5UTR-3CDS	ENST00000480055	ENST00000399044		TCGA	LD	LIHC	TCGA-DD-AACH-01A	SMURF1	chr7	98678698	-	CDRT15L2	chr17	20483462	+
5CDS-intron	ENST00000262320	ENST00000399951		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-intron	ENST00000262320	ENST00000399953		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-5UTR	ENST00000262320	ENST00000405960		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-intron	ENST00000354866	ENST00000399951		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-intron	ENST00000354866	ENST00000399953		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-5UTR	ENST00000354866	ENST00000405960		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-intron	ENST00000481769	ENST00000399951		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-intron	ENST00000481769	ENST00000399953		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-5UTR	ENST00000481769	ENST00000405960		TCGA	LD	LIHC	TCGA-DD-AACU-01A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-3CDS	ENST00000595535	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000595535	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000595535	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000595535	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000595535	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000595535	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000352632	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000352632	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000352632	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000352632	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000352632	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000352632	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000344104	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000344104	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000344104	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000344104	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000344104	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3UTR	ENST00000344104	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000338932	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000338932	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000338932	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000338932	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000338932	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3UTR	ENST00000338932	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000598249	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000598249	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000598249	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000598249	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000598249	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
5UTR-3UTR	ENST00000598249	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392025	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392025	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392025	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392025	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392025	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000392025	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392023	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392023	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392023	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392023	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000392023	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000392023	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000593816	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000593816	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000593816	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000593816	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000593816	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000593816	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AACV-01A	SPTBN4	chr19	40973212	+	RAD51B	chr14	68758601	+
In-frame	ENST00000204679	ENST00000455446		TCGA	LD	LIHC	TCGA-DD-AACX-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
Frame-shit	ENST00000204679	ENST00000397356		TCGA	LD	LIHC	TCGA-DD-AACX-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
Frame-shit	ENST00000204679	ENST00000397353		TCGA	LD	LIHC	TCGA-DD-AACX-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
5CDS-5UTR	ENST00000204679	ENST00000567398		TCGA	LD	LIHC	TCGA-DD-AACX-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
5CDS-5UTR	ENST00000204679	ENST00000566709		TCGA	LD	LIHC	TCGA-DD-AACX-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
5CDS-5UTR	ENST00000534328	ENST00000534738		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	AP2A2	chr11	977224	+	PKD1L3	chr16	72014033	-
5CDS-5UTR	ENST00000332231	ENST00000534738		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	AP2A2	chr11	977224	+	PKD1L3	chr16	72014033	-
5CDS-5UTR	ENST00000448903	ENST00000534738		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	AP2A2	chr11	977224	+	PKD1L3	chr16	72014033	-
intron-5UTR	ENST00000525891	ENST00000534738		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	AP2A2	chr11	977224	+	PKD1L3	chr16	72014033	-
intron-3CDS	ENST00000593786	ENST00000532097		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000593786	ENST00000431206		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000593786	ENST00000352303		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-intron	ENST00000593786	ENST00000532025		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000374796	ENST00000532097		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000374796	ENST00000431206		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000374796	ENST00000352303		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-intron	ENST00000374796	ENST00000532025		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000359003	ENST00000532097		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000359003	ENST00000431206		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-3CDS	ENST00000359003	ENST00000352303		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
intron-intron	ENST00000359003	ENST00000532025		TCGA	LD	LIHC	TCGA-DD-AAD0-01A	NCOA6	chr20	33329362	-	PSMD13	chr11	244041	+
In-frame	ENST00000025301	ENST00000320580		TCGA	LD	LIHC	TCGA-DD-AAD1-01A	AKAP11	chr13	42877999	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000025301	ENST00000529757		TCGA	LD	LIHC	TCGA-DD-AAD1-01A	AKAP11	chr13	42877999	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000025301	ENST00000524815		TCGA	LD	LIHC	TCGA-DD-AAD1-01A	AKAP11	chr13	42877999	+	PACS1	chr11	65960957	+
Frame-shit	ENST00000308020	ENST00000528780		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
In-frame	ENST00000308020	ENST00000328221		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
Frame-shit	ENST00000308020	ENST00000408968		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
5CDS-3UTR	ENST00000308020	ENST00000525554		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
intron-3CDS	ENST00000530087	ENST00000528780		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
intron-3CDS	ENST00000530087	ENST00000328221		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
intron-3CDS	ENST00000530087	ENST00000408968		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
intron-3UTR	ENST00000530087	ENST00000525554		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM1	chr11	314922	+
5CDS-intron	ENST00000308020	ENST00000533141		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM2	chr11	314922	+
5CDS-intron	ENST00000308020	ENST00000399817		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM2	chr11	314922	+
5CDS-intron	ENST00000308020	ENST00000602569		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM2	chr11	314922	+
intron-intron	ENST00000530087	ENST00000533141		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM2	chr11	314922	+
intron-intron	ENST00000530087	ENST00000399817		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM2	chr11	314922	+
intron-intron	ENST00000530087	ENST00000602569		TCGA	LD	LIHC	TCGA-DD-AAD5-01A	PTDSS2	chr11	460288	+	IFITM2	chr11	314922	+
In-frame	ENST00000508628	ENST00000361193		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000508628	ENST00000411502		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000508628	ENST00000546047		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000571602		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000508628	ENST00000572725		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000361193		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000411502		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000456466	ENST00000546047		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000571602		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000456466	ENST00000572725		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000582970	ENST00000361193		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000582970	ENST00000411502		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000582970	ENST00000546047		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000571602		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000582970	ENST00000572725		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000361193		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000411502		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000319921	ENST00000546047		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000571602		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000319921	ENST00000572725		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000336301	ENST00000361193		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000336301	ENST00000411502		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000336301	ENST00000546047		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000571602		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
5CDS-intron	ENST00000336301	ENST00000572725		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000361193		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000411502		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-3CDS	ENST00000427003	ENST00000546047		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000571602		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
intron-intron	ENST00000427003	ENST00000572725		TCGA	LD	LIHC	TCGA-DD-AAD6-01A	RNF213	chr17	78322086	+	SLC26A11	chr17	78225128	+
In-frame	ENST00000340473	ENST00000379151		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
In-frame	ENST00000340473	ENST00000361121		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
5CDS-5UTR	ENST00000340473	ENST00000357537		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
5CDS-intron	ENST00000340473	ENST00000473119		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
3UTR-3CDS	ENST00000494087	ENST00000379151		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
3UTR-3CDS	ENST00000494087	ENST00000361121		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
3UTR-5UTR	ENST00000494087	ENST00000357537		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
3UTR-intron	ENST00000494087	ENST00000473119		TCGA	LD	LIHC	TCGA-DD-AADA-01A	GTF2F2	chr13	45827105	+	GPALPP1	chr13	45589087	+
In-frame	ENST00000262320	ENST00000293872		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000262320	ENST00000337351		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000262320	ENST00000397783		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000262320	ENST00000397780		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5CDS-intron	ENST00000262320	ENST00000494366		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000354866	ENST00000293872		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000354866	ENST00000337351		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000354866	ENST00000397783		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
In-frame	ENST00000354866	ENST00000397780		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5CDS-intron	ENST00000354866	ENST00000494366		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5UTR-3CDS	ENST00000481769	ENST00000293872		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5UTR-3CDS	ENST00000481769	ENST00000337351		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5UTR-3CDS	ENST00000481769	ENST00000397783		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5UTR-3CDS	ENST00000481769	ENST00000397780		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
5UTR-intron	ENST00000481769	ENST00000494366		TCGA	LD	LIHC	TCGA-DD-AADB-01A	AXIN1	chr16	354304	-	LUC7L	chr16	249237	-
Frame-shit	ENST00000393043	ENST00000413366		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
5CDS-intron	ENST00000393043	ENST00000583361		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
Frame-shit	ENST00000269122	ENST00000413366		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
5CDS-intron	ENST00000269122	ENST00000583361		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
Frame-shit	ENST00000579456	ENST00000413366		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
5CDS-intron	ENST00000579456	ENST00000583361		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
intron-3CDS	ENST00000579815	ENST00000413366		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
intron-intron	ENST00000579815	ENST00000583361		TCGA	LD	LIHC	TCGA-DD-AADC-01A	CLTC	chr17	57697534	+	PRKCA	chr17	64683229	+
3UTR-intron	ENST00000379494	ENST00000317552		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000453318		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000380779		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000380780		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000380785		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000380787		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000380782		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
3UTR-intron	ENST00000379494	ENST00000479925		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000317552		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000453318		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000380779		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000380780		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000380785		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000380787		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000380782		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-intron	ENST00000494525	ENST00000479925		TCGA	LD	LIHC	TCGA-DD-AADC-01A	SMPX	chrX	21755667	-	MID1	chrX	10469599	-
5UTR-3CDS	ENST00000299341	ENST00000053867		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
5UTR-3CDS	ENST00000299341	ENST00000589265		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
5UTR-intron	ENST00000299341	ENST00000589923		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
In-frame	ENST00000376352	ENST00000053867		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
In-frame	ENST00000376352	ENST00000589265		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
5CDS-intron	ENST00000376352	ENST00000589923		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
In-frame	ENST00000405898	ENST00000053867		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
In-frame	ENST00000405898	ENST00000589265		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
5CDS-intron	ENST00000405898	ENST00000589923		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
In-frame	ENST00000434978	ENST00000053867		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
In-frame	ENST00000434978	ENST00000589265		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
5CDS-intron	ENST00000434978	ENST00000589923		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
intron-3CDS	ENST00000398391	ENST00000053867		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
intron-3CDS	ENST00000398391	ENST00000589265		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
intron-intron	ENST00000398391	ENST00000589923		TCGA	LD	LIHC	TCGA-DD-AADC-01A	STXBP4	chr17	53068318	+	GRN	chr17	42429709	+
5CDS-intron	ENST00000402696	ENST00000486975		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000402696	ENST00000451576		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000402696	ENST00000064724		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000402696	ENST00000489485		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000264998	ENST00000486975		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000264998	ENST00000451576		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000264998	ENST00000064724		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000264998	ENST00000489485		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
intron-intron	ENST00000475382	ENST00000486975		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
intron-intron	ENST00000475382	ENST00000451576		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
intron-intron	ENST00000475382	ENST00000064724		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
intron-intron	ENST00000475382	ENST00000489485		TCGA	LD	LIHC	TCGA-DD-AADC-01A	TF	chr3	133485277	+	CLDN11	chr3	170220600	+
5CDS-intron	ENST00000217402	ENST00000543878		TCGA	LD	LIHC	TCGA-DD-AADF-01A	CHMP4B	chr20	32399464	+	SYCP2L	chr6	10955349	+
5CDS-intron	ENST00000217402	ENST00000283141		TCGA	LD	LIHC	TCGA-DD-AADF-01A	CHMP4B	chr20	32399464	+	SYCP2L	chr6	10955349	+
5CDS-intron	ENST00000217402	ENST00000465872		TCGA	LD	LIHC	TCGA-DD-AADF-01A	CHMP4B	chr20	32399464	+	SYCP2L	chr6	10955349	+
5CDS-5UTR	ENST00000376279	ENST00000320033		TCGA	LD	LIHC	TCGA-DD-AADF-01A	PCCA	chr13	101077985	+	ARL4D	chr17	41477029	+
5CDS-5UTR	ENST00000376286	ENST00000320033		TCGA	LD	LIHC	TCGA-DD-AADF-01A	PCCA	chr13	101077985	+	ARL4D	chr17	41477029	+
5CDS-5UTR	ENST00000376285	ENST00000320033		TCGA	LD	LIHC	TCGA-DD-AADF-01A	PCCA	chr13	101077985	+	ARL4D	chr17	41477029	+
intron-5UTR	ENST00000485946	ENST00000320033		TCGA	LD	LIHC	TCGA-DD-AADF-01A	PCCA	chr13	101077985	+	ARL4D	chr17	41477029	+
Frame-shit	ENST00000379565	ENST00000379607		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
Frame-shit	ENST00000379565	ENST00000379593		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000544447	ENST00000379607		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000544447	ENST00000379593		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000379548	ENST00000379607		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000379548	ENST00000379593		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000540702	ENST00000379607		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000540702	ENST00000379593		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000479809	ENST00000379607		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
intron-3CDS	ENST00000479809	ENST00000379593		TCGA	LD	LIHC	TCGA-DD-AADJ-01A	RPS6KA3	chrX	20284682	-	EIF1AX	chrX	20153959	-
In-frame	ENST00000273450	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000273450	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000273450	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000273450	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-5UTR	ENST00000273450	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000273450	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
Frame-shit	ENST00000472186	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000472186	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000472186	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000472186	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-5UTR	ENST00000472186	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000472186	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
In-frame	ENST00000452905	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000452905	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000452905	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000452905	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-5UTR	ENST00000452905	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000452905	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
In-frame	ENST00000393434	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393434	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393434	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393434	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-5UTR	ENST00000393434	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393434	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
In-frame	ENST00000393431	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393431	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393431	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393431	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-5UTR	ENST00000393431	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5CDS-intron	ENST00000393431	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5UTR-3CDS	ENST00000413612	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5UTR-intron	ENST00000413612	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5UTR-intron	ENST00000413612	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5UTR-intron	ENST00000413612	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5UTR-5UTR	ENST00000413612	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
5UTR-intron	ENST00000413612	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-3CDS	ENST00000455064	ENST00000360370		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-intron	ENST00000455064	ENST00000346785		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-intron	ENST00000455064	ENST00000383598		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-intron	ENST00000455064	ENST00000315891		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-5UTR	ENST00000455064	ENST00000508835		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-intron	ENST00000455064	ENST00000514023		TCGA	LD	LIHC	TCGA-DD-AADM-01A	ALDH1L1	chr3	125872287	-	SLC41A3	chr3	125769893	-
intron-3CDS	ENST00000394752	ENST00000266041		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394752	ENST00000346281		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394752	ENST00000485816		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394752	ENST00000406595		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000394752	ENST00000434759		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000394752	ENST00000467462		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394750	ENST00000266041		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394750	ENST00000346281		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394750	ENST00000485816		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000394750	ENST00000406595		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000394750	ENST00000434759		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000394750	ENST00000467462		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000358080	ENST00000266041		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000358080	ENST00000346281		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000358080	ENST00000485816		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000358080	ENST00000406595		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000358080	ENST00000434759		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000358080	ENST00000467462		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000296295	ENST00000266041		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000296295	ENST00000346281		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000296295	ENST00000485816		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000296295	ENST00000406595		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000296295	ENST00000434759		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000296295	ENST00000467462		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000470575	ENST00000266041		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000470575	ENST00000346281		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000470575	ENST00000485816		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-3CDS	ENST00000470575	ENST00000406595		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000470575	ENST00000434759		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000470575	ENST00000467462		TCGA	LD	LIHC	TCGA-DD-AADM-01A	SFMBT1	chr3	53052102	-	ITIH4	chr3	52848087	-
intron-intron	ENST00000372979	ENST00000416782		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000372979	ENST00000479005		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000372979	ENST00000372945		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000372979	ENST00000372940		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000454759	ENST00000416782		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000454759	ENST00000479005		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000454759	ENST00000372945		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000454759	ENST00000372940		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000430082	ENST00000416782		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000430082	ENST00000479005		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000430082	ENST00000372945		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000430082	ENST00000372940		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000610256	ENST00000416782		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000610256	ENST00000479005		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-5UTR	ENST00000610256	ENST00000372945		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000610256	ENST00000372940		TCGA	LD	LIHC	TCGA-DD-AADN-01A	ECD	chr10	74894361	-	MRPS16	chr10	75010749	-
intron-intron	ENST00000472824	ENST00000357325		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
intron-intron	ENST00000472824	ENST00000537739		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
intron-intron	ENST00000472824	ENST00000368209		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
intron-5UTR	ENST00000472824	ENST00000465180		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
intron-intron	ENST00000472824	ENST00000416666		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
intron-intron	ENST00000472824	ENST00000368206		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000313146	ENST00000357325		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000313146	ENST00000537739		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000313146	ENST00000368209		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-5UTR	ENST00000313146	ENST00000465180		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000313146	ENST00000416666		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000313146	ENST00000368206		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000368219	ENST00000357325		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000368219	ENST00000537739		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000368219	ENST00000368209		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-5UTR	ENST00000368219	ENST00000465180		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000368219	ENST00000416666		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
5CDS-intron	ENST00000368219	ENST00000368206		TCGA	LD	LIHC	TCGA-DD-AADP-01A	ISG20L2	chr1	156696698	-	HDGF	chr1	156729011	-
Frame-shit	ENST00000336061	ENST00000332707		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RASSF3	chr12	65078674	+	XPOT	chr12	64825318	+
Frame-shit	ENST00000542104	ENST00000332707		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RASSF3	chr12	65078674	+	XPOT	chr12	64825318	+
intron-3CDS	ENST00000540088	ENST00000332707		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RASSF3	chr12	65078674	+	XPOT	chr12	64825318	+
Frame-shit	ENST00000308488	ENST00000525428		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000308488	ENST00000263309		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000308488	ENST00000525064		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000308488	ENST00000532069		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000308488	ENST00000528364		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
5CDS-intron	ENST00000308488	ENST00000533957		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000360355	ENST00000525428		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000360355	ENST00000263309		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000360355	ENST00000525064		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000360355	ENST00000532069		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000360355	ENST00000528364		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
5CDS-intron	ENST00000360355	ENST00000533957		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000480887	ENST00000525428		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000480887	ENST00000263309		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000480887	ENST00000525064		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000480887	ENST00000532069		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000480887	ENST00000528364		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-intron	ENST00000480887	ENST00000533957		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000530604	ENST00000525428		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000530604	ENST00000263309		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000530604	ENST00000525064		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000530604	ENST00000532069		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000530604	ENST00000528364		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
intron-intron	ENST00000530604	ENST00000533957		TCGA	LD	LIHC	TCGA-DD-AADP-01A	RSF1	chr11	77451776	-	CLNS1A	chr11	77340944	-
5CDS-5UTR	ENST00000370132	ENST00000462159		TCGA	LD	LIHC	TCGA-DD-AADR-01A	DBT	chr1	100700992	-	SASS6	chr1	100587105	-
5CDS-5UTR	ENST00000370132	ENST00000287482		TCGA	LD	LIHC	TCGA-DD-AADR-01A	DBT	chr1	100700992	-	SASS6	chr1	100587105	-
5CDS-5UTR	ENST00000370132	ENST00000535161		TCGA	LD	LIHC	TCGA-DD-AADR-01A	DBT	chr1	100700992	-	SASS6	chr1	100587105	-
5CDS-5UTR	ENST00000370131	ENST00000462159		TCGA	LD	LIHC	TCGA-DD-AADR-01A	DBT	chr1	100700992	-	SASS6	chr1	100587105	-
5CDS-5UTR	ENST00000370131	ENST00000287482		TCGA	LD	LIHC	TCGA-DD-AADR-01A	DBT	chr1	100700992	-	SASS6	chr1	100587105	-
5CDS-5UTR	ENST00000370131	ENST00000535161		TCGA	LD	LIHC	TCGA-DD-AADR-01A	DBT	chr1	100700992	-	SASS6	chr1	100587105	-
Frame-shit	ENST00000296233	ENST00000471714		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
Frame-shit	ENST00000296233	ENST00000284322		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
5CDS-intron	ENST00000296233	ENST00000495063		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
5CDS-intron	ENST00000296233	ENST00000383691		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
5CDS-intron	ENST00000296233	ENST00000532144		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
intron-3CDS	ENST00000509675	ENST00000471714		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
intron-3CDS	ENST00000509675	ENST00000284322		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
intron-intron	ENST00000509675	ENST00000495063		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
intron-intron	ENST00000509675	ENST00000383691		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
intron-intron	ENST00000509675	ENST00000532144		TCGA	LD	LIHC	TCGA-DD-AADV-01A	KLF15	chr3	126070684	-	ABI3BP	chr3	100494179	-
intron-3CDS	ENST00000446828	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000446828	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000446828	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000446828	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-3CDS	ENST00000424227	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000424227	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000424227	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000424227	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
5UTR-3CDS	ENST00000443863	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
5UTR-5UTR	ENST00000443863	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
5UTR-5UTR	ENST00000443863	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
5UTR-intron	ENST00000443863	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-3CDS	ENST00000535426	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000535426	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000535426	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000535426	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-3CDS	ENST00000265026	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000265026	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000265026	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000265026	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-3CDS	ENST00000448876	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000448876	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000448876	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000448876	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-3CDS	ENST00000454237	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000454237	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000454237	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000454237	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-3CDS	ENST00000438798	ENST00000231887		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000438798	ENST00000456310		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-5UTR	ENST00000438798	ENST00000475987		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
intron-intron	ENST00000438798	ENST00000440662		TCGA	LD	LIHC	TCGA-DD-AADV-01A	MAP3K13	chr3	185046750	+	EHHADH	chr3	184953250	-
5CDS-intron	ENST00000255681	ENST00000334456		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000255681	ENST00000376450		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000255681	ENST00000444035		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000255681	ENST00000544570		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000255681	ENST00000418754		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000255681	ENST00000540345		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000255681	ENST00000540380		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000334456		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000376450		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000444035		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000544570		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000418754		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000540345		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000538595	ENST00000540380		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MACROD1	chr11	63918711	-	PDE2A	chr11	72342183	-
Frame-shit	ENST00000310614	ENST00000294304		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5CDS-intron	ENST00000310614	ENST00000529481		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
Frame-shit	ENST00000535529	ENST00000294304		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5CDS-intron	ENST00000535529	ENST00000529481		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5UTR-3CDS	ENST00000411840	ENST00000294304		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5UTR-intron	ENST00000411840	ENST00000529481		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5UTR-3CDS	ENST00000398483	ENST00000294304		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5UTR-intron	ENST00000398483	ENST00000529481		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
Frame-shit	ENST00000542303	ENST00000294304		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5CDS-intron	ENST00000542303	ENST00000529481		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
intron-3CDS	ENST00000314282	ENST00000294304		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
intron-intron	ENST00000314282	ENST00000529481		TCGA	LD	LIHC	TCGA-DD-AADY-01A	MRPL48	chr11	73536841	+	LRP5	chr11	68115315	+
5CDS-intron	ENST00000331825	ENST00000390168		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	FTL	chr19	49468866	+	H19	chr11	2017024	-
Frame-shit	ENST00000368485	ENST00000368482		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
Frame-shit	ENST00000368485	ENST00000368480		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
5CDS-3UTR	ENST00000368485	ENST00000479937		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
Frame-shit	ENST00000344086	ENST00000368482		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
Frame-shit	ENST00000344086	ENST00000368480		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
5CDS-3UTR	ENST00000344086	ENST00000479937		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
intron-3CDS	ENST00000507256	ENST00000368482		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
intron-3CDS	ENST00000507256	ENST00000368480		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
intron-3UTR	ENST00000507256	ENST00000479937		TCGA	LD	LIHC	TCGA-DD-AAE1-01A	IL6R	chr1	154408586	+	TDRD10	chr1	154514500	+
5UTR-5UTR	ENST00000434513	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000434513	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000434513	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000434513	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000434513	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000361221	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000361221	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000361221	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000361221	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000361221	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000452522	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000452522	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000452522	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000452522	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
5UTR-5UTR	ENST00000452522	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375415	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375415	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375415	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375415	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375415	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375420	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375420	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375420	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375420	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375420	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000469726	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000469726	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000469726	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000469726	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000469726	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375408	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375408	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375408	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375408	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000375408	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000167825	ENST00000329875		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000167825	ENST00000337943		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000167825	ENST00000403172		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000167825	ENST00000577756		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-5UTR	ENST00000167825	ENST00000402252		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	ARHGEF10L	chr1	17866445	+	PYCR1	chr17	79894737	-
intron-3CDS	ENST00000455485	ENST00000263112		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	GUSBP11	chr22	24042913	-	GGT5	chr22	24622735	-
intron-3CDS	ENST00000455485	ENST00000327365		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	GUSBP11	chr22	24042913	-	GGT5	chr22	24622735	-
intron-3CDS	ENST00000455485	ENST00000398292		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	GUSBP11	chr22	24042913	-	GGT5	chr22	24622735	-
intron-3CDS	ENST00000455485	ENST00000418439		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	GUSBP11	chr22	24042913	-	GGT5	chr22	24622735	-
In-frame	ENST00000300976	ENST00000600490		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
In-frame	ENST00000300976	ENST00000262817		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000595182	ENST00000600490		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000595182	ENST00000262817		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000599006	ENST00000600490		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000599006	ENST00000262817		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000596843	ENST00000600490		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000596843	ENST00000262817		TCGA	LD	LIHC	TCGA-DD-AAE2-01A	KLHL26	chr19	18779251	+	TMEM59L	chr19	18724682	+
5CDS-5UTR	ENST00000367796	ENST00000367771		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367796	ENST00000367772		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367796	ENST00000367770		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367796	ENST00000470238		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000367771		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000367772		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000367770		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
5CDS-5UTR	ENST00000367797	ENST00000470238		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000367771		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000367772		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000367770		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
intron-5UTR	ENST00000546081	ENST00000470238		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	F5	chr1	169500024	-	SCYL3	chr1	169858031	-
Frame-shit	ENST00000268711	ENST00000389022		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	MED9	chr17	17380579	+	NT5M	chr17	17248108	+
5CDS-3UTR	ENST00000268711	ENST00000582909		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	MED9	chr17	17380579	+	NT5M	chr17	17248108	+
Frame-shit	ENST00000580462	ENST00000389022		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	MED9	chr17	17380579	+	NT5M	chr17	17248108	+
5CDS-3UTR	ENST00000580462	ENST00000582909		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	MED9	chr17	17380579	+	NT5M	chr17	17248108	+
3UTR-3CDS	ENST00000585041	ENST00000389022		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	MED9	chr17	17380579	+	NT5M	chr17	17248108	+
3UTR-3UTR	ENST00000585041	ENST00000582909		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	MED9	chr17	17380579	+	NT5M	chr17	17248108	+
5UTR-intron	ENST00000437398	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000437398	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000437398	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-3UTR	ENST00000437398	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000437398	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000437398	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000314328	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000314328	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000314328	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-3UTR	ENST00000314328	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000314328	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000314328	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000541492	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000541492	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000541492	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-3UTR	ENST00000541492	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000541492	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-intron	ENST00000541492	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
3UTR-intron	ENST00000416735	ENST00000487861		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
3UTR-intron	ENST00000416735	ENST00000471583		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
3UTR-intron	ENST00000416735	ENST00000487270		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
3UTR-3UTR	ENST00000416735	ENST00000488612		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
3UTR-intron	ENST00000416735	ENST00000390683		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
3UTR-intron	ENST00000416735	ENST00000469165		TCGA	LD	LIHC	TCGA-DD-AAE4-01A	SPECC1L	chr22	24666951	+	RAD51B	chr14	69196525	+
5UTR-5UTR	ENST00000350425	ENST00000481445		TCGA	LD	LIHC	TCGA-DD-AAE9-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-3UTR	ENST00000350425	ENST00000475465		TCGA	LD	LIHC	TCGA-DD-AAE9-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-5UTR	ENST00000343533	ENST00000481445		TCGA	LD	LIHC	TCGA-DD-AAE9-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-3UTR	ENST00000343533	ENST00000475465		TCGA	LD	LIHC	TCGA-DD-AAE9-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-5UTR	ENST00000341514	ENST00000481445		TCGA	LD	LIHC	TCGA-DD-AAE9-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-3UTR	ENST00000341514	ENST00000475465		TCGA	LD	LIHC	TCGA-DD-AAE9-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
In-frame	ENST00000383777	ENST00000435459		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
In-frame	ENST00000383777	ENST00000383787		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
Frame-shit	ENST00000383777	ENST00000383785		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
In-frame	ENST00000383777	ENST00000383788		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000383777	ENST00000603752		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000383777	ENST00000383781		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000383777	ENST00000603808		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000383777	ENST00000383786		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
In-frame	ENST00000399451	ENST00000435459		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
In-frame	ENST00000399451	ENST00000383787		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
Frame-shit	ENST00000399451	ENST00000383785		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
In-frame	ENST00000399451	ENST00000383788		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000399451	ENST00000603752		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000399451	ENST00000383781		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000399451	ENST00000603808		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5CDS-intron	ENST00000399451	ENST00000383786		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-3CDS	ENST00000497037	ENST00000435459		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-3CDS	ENST00000497037	ENST00000383787		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-3CDS	ENST00000497037	ENST00000383785		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-3CDS	ENST00000497037	ENST00000383788		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-intron	ENST00000497037	ENST00000603752		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-intron	ENST00000497037	ENST00000383781		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-intron	ENST00000497037	ENST00000603808		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
5UTR-intron	ENST00000497037	ENST00000383786		TCGA	LD	LIHC	TCGA-DD-AAEE-01A	ANKRD28	chr3	15793257	-	COLQ	chr3	15507944	-
intron-3CDS	ENST00000234170	ENST00000263881		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	CEBPZ	chr2	37456092	-	MAP4K3	chr2	39477846	-
intron-3CDS	ENST00000234170	ENST00000437545		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	CEBPZ	chr2	37456092	-	MAP4K3	chr2	39477846	-
intron-3CDS	ENST00000234170	ENST00000341681		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	CEBPZ	chr2	37456092	-	MAP4K3	chr2	39477846	-
intron-intron	ENST00000234170	ENST00000484274		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	CEBPZ	chr2	37456092	-	MAP4K3	chr2	39477846	-
intron-intron	ENST00000234170	ENST00000536018		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	CEBPZ	chr2	37456092	-	MAP4K3	chr2	39477846	-
intron-intron	ENST00000234170	ENST00000474502		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	CEBPZ	chr2	37456092	-	MAP4K3	chr2	39477846	-
In-frame	ENST00000598398	ENST00000415930		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	HAMP	chr19	35773570	+	GPI	chr19	34884153	+
In-frame	ENST00000598398	ENST00000356487		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	HAMP	chr19	35773570	+	GPI	chr19	34884153	+
In-frame	ENST00000598398	ENST00000586425		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	HAMP	chr19	35773570	+	GPI	chr19	34884153	+
In-frame	ENST00000222304	ENST00000415930		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	HAMP	chr19	35773570	+	GPI	chr19	34884153	+
In-frame	ENST00000222304	ENST00000356487		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	HAMP	chr19	35773570	+	GPI	chr19	34884153	+
In-frame	ENST00000222304	ENST00000586425		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	HAMP	chr19	35773570	+	GPI	chr19	34884153	+
Frame-shit	ENST00000293261	ENST00000222122		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000293261	ENST00000599385		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
In-frame	ENST00000293261	ENST00000593500		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000293261	ENST00000601104		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000377431	ENST00000222122		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000377431	ENST00000599385		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
In-frame	ENST00000377431	ENST00000593500		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000377431	ENST00000601104		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000435956	ENST00000222122		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000435956	ENST00000599385		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
In-frame	ENST00000435956	ENST00000593500		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000435956	ENST00000601104		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000436660	ENST00000222122		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000436660	ENST00000599385		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
In-frame	ENST00000436660	ENST00000593500		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000436660	ENST00000601104		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000541566	ENST00000222122		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
Frame-shit	ENST00000541566	ENST00000599385		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
In-frame	ENST00000541566	ENST00000593500		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000541566	ENST00000601104		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
intron-3CDS	ENST00000598012	ENST00000222122		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
intron-3CDS	ENST00000598012	ENST00000599385		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
intron-3CDS	ENST00000598012	ENST00000593500		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
intron-intron	ENST00000598012	ENST00000601104		TCGA	LD	LIHC	TCGA-DD-AAEG-01A	TMEM143	chr19	48845787	-	DBP	chr19	49134309	-
3UTR-3CDS	ENST00000431677	ENST00000372880		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	ARMCX4	chrX	100673988	+	BTK	chrX	100626689	-
3UTR-3CDS	ENST00000431677	ENST00000308731		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	ARMCX4	chrX	100673988	+	BTK	chrX	100626689	-
3UTR-intron	ENST00000431677	ENST00000464567		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	ARMCX4	chrX	100673988	+	BTK	chrX	100626689	-
intron-3CDS	ENST00000423738	ENST00000372880		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	ARMCX4	chrX	100673988	+	BTK	chrX	100626689	-
intron-3CDS	ENST00000423738	ENST00000308731		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	ARMCX4	chrX	100673988	+	BTK	chrX	100626689	-
intron-intron	ENST00000423738	ENST00000464567		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	ARMCX4	chrX	100673988	+	BTK	chrX	100626689	-
In-frame	ENST00000204679	ENST00000455446		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
Frame-shit	ENST00000204679	ENST00000397356		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
Frame-shit	ENST00000204679	ENST00000397353		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
5CDS-5UTR	ENST00000204679	ENST00000567398		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
5CDS-5UTR	ENST00000204679	ENST00000566709		TCGA	LD	LIHC	TCGA-DD-AAEH-01A	GNPTG	chr16	1402307	+	HAGH	chr16	1859834	-
In-frame	ENST00000010404	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000010404	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000010404	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000010404	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
In-frame	ENST00000396210	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396210	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396210	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396210	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
In-frame	ENST00000535309	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000535309	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000535309	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000535309	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-3CDS	ENST00000540056	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-5UTR	ENST00000540056	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-5UTR	ENST00000540056	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-5UTR	ENST00000540056	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
In-frame	ENST00000396209	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396209	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396209	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396209	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
In-frame	ENST00000396207	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396207	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396207	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000396207	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-3CDS	ENST00000359720	ENST00000414691		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-5UTR	ENST00000359720	ENST00000514824		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-5UTR	ENST00000359720	ENST00000229583		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
intron-5UTR	ENST00000359720	ENST00000379413		TCGA	LD	LIHC	TCGA-DD-AAVR-01A	MGST1	chr12	16510633	+	ADTRP	chr6	11723733	-
5UTR-3CDS	ENST00000214893	ENST00000223864		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
5UTR-5UTR	ENST00000214893	ENST00000482696		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
In-frame	ENST00000339450	ENST00000223864		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000339450	ENST00000482696		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000543230	ENST00000223864		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000543230	ENST00000482696		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000381506	ENST00000223864		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000381506	ENST00000482696		TCGA	LD	LIHC	TCGA-ED-A459-01A	ERMP1	chr9	5805027	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000570083	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000570083	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000570083	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000355906	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000355906	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000355906	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000398131	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000398131	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000398131	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000569639	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000569639	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000569639	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000357763	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000357763	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000357763	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000562526	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000562526	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000562526	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000565574	ENST00000356524		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000565574	ENST00000532858		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
5CDS-5UTR	ENST00000565574	ENST00000405158		TCGA	LD	LIHC	TCGA-ED-A459-01A	HP	chr16	72090142	+	SAA1	chr11	18287811	+
Frame-shit	ENST00000499023	ENST00000404648		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
In-frame	ENST00000499023	ENST00000405164		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
5CDS-intron	ENST00000499023	ENST00000336098		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
5CDS-intron	ENST00000499023	ENST00000407946		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
Frame-shit	ENST00000393905	ENST00000404648		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
In-frame	ENST00000393905	ENST00000405164		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
5CDS-intron	ENST00000393905	ENST00000336098		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
5CDS-intron	ENST00000393905	ENST00000407946		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
Frame-shit	ENST00000302078	ENST00000404648		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
In-frame	ENST00000302078	ENST00000405164		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
5CDS-intron	ENST00000302078	ENST00000336098		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
5CDS-intron	ENST00000302078	ENST00000407946		TCGA	LD	LIHC	TCGA-ED-A459-01A	PLRG1	chr4	155466988	-	FGG	chr4	155525506	-
In-frame	ENST00000358415	ENST00000344293		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	ITIH2	chr10	7755248	+	TAF3	chr10	8051041	+
3UTR-3CDS	ENST00000480387	ENST00000344293		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	ITIH2	chr10	7755248	+	TAF3	chr10	8051041	+
In-frame	ENST00000379587	ENST00000344293		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	ITIH2	chr10	7755248	+	TAF3	chr10	8051041	+
Frame-shit	ENST00000319550	ENST00000540275		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	NT5DC1	chr6	116439108	+	DSE	chr6	116720361	+
5CDS-5UTR	ENST00000319550	ENST00000452085		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	NT5DC1	chr6	116439108	+	DSE	chr6	116720361	+
5CDS-5UTR	ENST00000319550	ENST00000537543		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	NT5DC1	chr6	116439108	+	DSE	chr6	116720361	+
5CDS-5UTR	ENST00000319550	ENST00000331677		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	NT5DC1	chr6	116439108	+	DSE	chr6	116720361	+
5CDS-5UTR	ENST00000319550	ENST00000359564		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	NT5DC1	chr6	116439108	+	DSE	chr6	116720361	+
5CDS-intron	ENST00000319550	ENST00000606265		TCGA	LD	LIHC	TCGA-ED-A4XI-01A	NT5DC1	chr6	116439108	+	DSE	chr6	116720361	+
5CDS-3UTR	ENST00000295688	ENST00000361170		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-intron	ENST00000295688	ENST00000498755		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-3UTR	ENST00000368259	ENST00000361170		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-intron	ENST00000368259	ENST00000498755		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-3UTR	ENST00000368261	ENST00000361170		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-intron	ENST00000368261	ENST00000498755		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-3UTR	ENST00000472765	ENST00000361170		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5CDS-intron	ENST00000472765	ENST00000498755		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
intron-3UTR	ENST00000368256	ENST00000361170		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
intron-intron	ENST00000368256	ENST00000498755		TCGA	LD	LIHC	TCGA-ED-A627-01A	CCT3	chr1	156294763	-	IQGAP3	chr1	156495344	-
5UTR-intron	ENST00000304056	ENST00000610140		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
5UTR-5UTR	ENST00000304056	ENST00000381626		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
5UTR-5UTR	ENST00000304056	ENST00000396152		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
5UTR-intron	ENST00000304056	ENST00000242210		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
5UTR-intron	ENST00000304056	ENST00000405342		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
5UTR-5UTR	ENST00000304056	ENST00000409467		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
5UTR-5UTR	ENST00000304056	ENST00000409787		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-intron	ENST00000485611	ENST00000610140		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-5UTR	ENST00000485611	ENST00000381626		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-5UTR	ENST00000485611	ENST00000396152		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-intron	ENST00000485611	ENST00000242210		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-intron	ENST00000485611	ENST00000405342		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-5UTR	ENST00000485611	ENST00000409467		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-5UTR	ENST00000485611	ENST00000409787		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	KBTBD2	chr7	32931148	-	NT5C3A	chr7	33075600	-
intron-3CDS	ENST00000376741	ENST00000535458		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	SP2	chr17	45975293	+	KPNB1	chr17	45747044	+
intron-3CDS	ENST00000376741	ENST00000290158		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	SP2	chr17	45975293	+	KPNB1	chr17	45747044	+
intron-3CDS	ENST00000376741	ENST00000540627		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	SP2	chr17	45975293	+	KPNB1	chr17	45747044	+
intron-3CDS	ENST00000376741	ENST00000537679		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	SP2	chr17	45975293	+	KPNB1	chr17	45747044	+
intron-intron	ENST00000376741	ENST00000577918		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	SP2	chr17	45975293	+	KPNB1	chr17	45747044	+
5UTR-3CDS	ENST00000449054	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000449054	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000449054	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000449054	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379238	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379238	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379238	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379238	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000360802	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000360802	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000360802	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000360802	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379239	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379239	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379239	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000379239	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000539807	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000539807	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000539807	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000539807	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000418786	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000418786	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000418786	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000418786	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379225	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379225	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379225	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379225	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379235	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379235	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379235	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-3CDS	ENST00000379235	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000480885	ENST00000402558		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000480885	ENST00000379174		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000480885	ENST00000379166		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
5UTR-3CDS	ENST00000480885	ENST00000345050		TCGA	LD	LIHC	TCGA-ED-A7PX-01A	UBAP2	chr9	34048823	-	KIF24	chr9	34263170	-
intron-5UTR	ENST00000316403	ENST00000444837		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000316403	ENST00000569500		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000316403	ENST00000379811		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-intron	ENST00000316403	ENST00000568675		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000546343	ENST00000444837		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000546343	ENST00000569500		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000546343	ENST00000379811		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-intron	ENST00000546343	ENST00000568675		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000560366	ENST00000444837		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000560366	ENST00000569500		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000560366	ENST00000379811		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-intron	ENST00000560366	ENST00000568675		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000405140	ENST00000444837		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000405140	ENST00000569500		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000405140	ENST00000379811		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-intron	ENST00000405140	ENST00000568675		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000523500	ENST00000444837		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000523500	ENST00000569500		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-5UTR	ENST00000523500	ENST00000379811		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
intron-intron	ENST00000523500	ENST00000568675		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	CLU	chr8	27455616	-	MT1G	chr16	56701945	-
Frame-shit	ENST00000410032	ENST00000404910		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
In-frame	ENST00000410032	ENST00000254661		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000410032	ENST00000409726		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000410032	ENST00000403885		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000264605	ENST00000404910		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
In-frame	ENST00000264605	ENST00000254661		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000264605	ENST00000409726		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000264605	ENST00000403885		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000445024	ENST00000404910		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
In-frame	ENST00000445024	ENST00000254661		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000445024	ENST00000409726		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000445024	ENST00000403885		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000468178	ENST00000404910		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000468178	ENST00000254661		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000468178	ENST00000409726		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000468178	ENST00000403885		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000338530	ENST00000404910		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
In-frame	ENST00000338530	ENST00000254661		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000338530	ENST00000409726		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000338530	ENST00000403885		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409373	ENST00000404910		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
In-frame	ENST00000409373	ENST00000254661		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409373	ENST00000409726		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409373	ENST00000403885		TCGA	LD	LIHC	TCGA-ED-A7XP-01A	MLPH	chr2	238402179	+	RAMP1	chr2	238820170	+
In-frame	ENST00000407936	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000407936	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000407936	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000407936	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000405557	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000405557	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000405557	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000405557	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000442738	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000442738	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000442738	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000442738	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
Frame-shit	ENST00000460648	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
Frame-shit	ENST00000460648	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000460648	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000460648	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
3UTR-3CDS	ENST00000488684	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
3UTR-3CDS	ENST00000488684	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
3UTR-intron	ENST00000488684	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
3UTR-intron	ENST00000488684	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000606538	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000606538	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000606538	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000606538	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000470701	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
In-frame	ENST00000470701	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000470701	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-intron	ENST00000470701	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
intron-3CDS	ENST00000608713	ENST00000412331		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
intron-3CDS	ENST00000608713	ENST00000381683		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
intron-intron	ENST00000608713	ENST00000406934		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
intron-intron	ENST00000608713	ENST00000476955		TCGA	LD	LIHC	TCGA-ED-A82E-01A	POLR2F	chr22	38363177	+	EIF3L	chr22	38251572	+
5CDS-5UTR	ENST00000397762	ENST00000337198		TCGA	LD	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21943026	-	AZIN1	chr8	103870378	-
5CDS-5UTR	ENST00000397762	ENST00000347770		TCGA	LD	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21943026	-	AZIN1	chr8	103870378	-
5CDS-intron	ENST00000397762	ENST00000522311		TCGA	LD	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21943026	-	AZIN1	chr8	103870378	-
5UTR-5UTR	ENST00000461909	ENST00000337198		TCGA	LD	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21943026	-	AZIN1	chr8	103870378	-
5UTR-5UTR	ENST00000461909	ENST00000347770		TCGA	LD	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21943026	-	AZIN1	chr8	103870378	-
5UTR-intron	ENST00000461909	ENST00000522311		TCGA	LD	LIHC	TCGA-ED-A82E-01A	RAB2B	chr14	21943026	-	AZIN1	chr8	103870378	-
In-frame	ENST00000425042	ENST00000389840		TCGA	LD	LIHC	TCGA-ED-A97K-01A	HID1	chr17	72968686	-	DNAH17	chr17	76506588	-
In-frame	ENST00000425042	ENST00000585328		TCGA	LD	LIHC	TCGA-ED-A97K-01A	HID1	chr17	72968686	-	DNAH17	chr17	76506588	-
5CDS-intron	ENST00000425042	ENST00000586052		TCGA	LD	LIHC	TCGA-ED-A97K-01A	HID1	chr17	72968686	-	DNAH17	chr17	76506588	-
intron-3CDS	ENST00000532900	ENST00000389840		TCGA	LD	LIHC	TCGA-ED-A97K-01A	HID1	chr17	72968686	-	DNAH17	chr17	76506588	-
intron-3CDS	ENST00000532900	ENST00000585328		TCGA	LD	LIHC	TCGA-ED-A97K-01A	HID1	chr17	72968686	-	DNAH17	chr17	76506588	-
intron-intron	ENST00000532900	ENST00000586052		TCGA	LD	LIHC	TCGA-ED-A97K-01A	HID1	chr17	72968686	-	DNAH17	chr17	76506588	-
5CDS-3UTR	ENST00000378847	ENST00000474155		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-5UTR	ENST00000378847	ENST00000277570		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-intron	ENST00000378847	ENST00000379200		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
3UTR-3UTR	ENST00000487696	ENST00000474155		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
3UTR-5UTR	ENST00000487696	ENST00000277570		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
3UTR-intron	ENST00000487696	ENST00000379200		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-3UTR	ENST00000378845	ENST00000474155		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-5UTR	ENST00000378845	ENST00000277570		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
5CDS-intron	ENST00000378845	ENST00000379200		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CAMK1D	chr10	12391909	+	PROSER2	chr10	11893996	+
Frame-shit	ENST00000256413	ENST00000282059		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CTIF	chr18	46197115	+	C18orf25	chr18	43833663	+
Frame-shit	ENST00000256413	ENST00000321319		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CTIF	chr18	46197115	+	C18orf25	chr18	43833663	+
Frame-shit	ENST00000382998	ENST00000282059		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CTIF	chr18	46197115	+	C18orf25	chr18	43833663	+
Frame-shit	ENST00000382998	ENST00000321319		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CTIF	chr18	46197115	+	C18orf25	chr18	43833663	+
intron-3CDS	ENST00000592658	ENST00000282059		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CTIF	chr18	46197115	+	C18orf25	chr18	43833663	+
intron-3CDS	ENST00000592658	ENST00000321319		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	CTIF	chr18	46197115	+	C18orf25	chr18	43833663	+
In-frame	ENST00000373036	ENST00000372862		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
In-frame	ENST00000373036	ENST00000372858		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
In-frame	ENST00000373036	ENST00000372857		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
In-frame	ENST00000373036	ENST00000372856		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
5CDS-intron	ENST00000373036	ENST00000529216		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
intron-3CDS	ENST00000468190	ENST00000372862		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
intron-3CDS	ENST00000468190	ENST00000372858		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
intron-3CDS	ENST00000468190	ENST00000372857		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
intron-3CDS	ENST00000468190	ENST00000372856		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
intron-intron	ENST00000468190	ENST00000529216		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	MTF1	chr1	38322923	-	PABPC4	chr1	40038258	-
5CDS-intron	ENST00000253925	ENST00000441339		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000253925	ENST00000308946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000253925	ENST00000535407		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000253925	ENST00000541137		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000389547	ENST00000441339		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000389547	ENST00000308946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000389547	ENST00000535407		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000389547	ENST00000541137		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000530548	ENST00000441339		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000530548	ENST00000308946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000530548	ENST00000535407		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000530548	ENST00000541137		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	PPFIA1	chr11	70118542	+	MYEOV	chr11	69156278	+
Frame-shit	ENST00000405409	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000405409	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000405409	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000405409	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000414461	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000414461	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000414461	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000414461	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000449924	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000449924	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000449924	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000449924	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000262829	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000262829	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000262829	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000262829	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000397303	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000397303	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000397303	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000397303	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000359369	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000359369	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000359369	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000359369	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000416721	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000416721	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000416721	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000416721	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000438146	ENST00000249071		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000438146	ENST00000406508		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
In-frame	ENST00000438146	ENST00000405484		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000438146	ENST00000401529		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	RBFOX2	chr22	36205827	-	RAC2	chr22	37622843	-
5CDS-3UTR	ENST00000263346	ENST00000301011		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TCF25	chr16	89967202	+	ZC3H18	chr16	88697897	+
5CDS-intron	ENST00000263346	ENST00000452588		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TCF25	chr16	89967202	+	ZC3H18	chr16	88697897	+
intron-3UTR	ENST00000563406	ENST00000301011		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TCF25	chr16	89967202	+	ZC3H18	chr16	88697897	+
intron-intron	ENST00000563406	ENST00000452588		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TCF25	chr16	89967202	+	ZC3H18	chr16	88697897	+
5CDS-3UTR	ENST00000263347	ENST00000301011		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TCF25	chr16	89967202	+	ZC3H18	chr16	88697897	+
5CDS-intron	ENST00000263347	ENST00000452588		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TCF25	chr16	89967202	+	ZC3H18	chr16	88697897	+
Frame-shit	ENST00000358387	ENST00000296877		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TXNDC15	chr5	134210220	+	LEAP2	chr5	132209642	+
5CDS-3UTR	ENST00000358387	ENST00000485457		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TXNDC15	chr5	134210220	+	LEAP2	chr5	132209642	+
intron-3CDS	ENST00000546290	ENST00000296877		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TXNDC15	chr5	134210220	+	LEAP2	chr5	132209642	+
intron-3UTR	ENST00000546290	ENST00000485457		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TXNDC15	chr5	134210220	+	LEAP2	chr5	132209642	+
intron-3CDS	ENST00000502625	ENST00000296877		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TXNDC15	chr5	134210220	+	LEAP2	chr5	132209642	+
intron-3UTR	ENST00000502625	ENST00000485457		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	TXNDC15	chr5	134210220	+	LEAP2	chr5	132209642	+
5CDS-5UTR	ENST00000344147	ENST00000373602		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000344147	ENST00000421922		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000344147	ENST00000483009		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
3UTR-5UTR	ENST00000479629	ENST00000373602		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
3UTR-5UTR	ENST00000479629	ENST00000421922		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
3UTR-3UTR	ENST00000479629	ENST00000483009		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000373714	ENST00000373602		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000373714	ENST00000421922		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000373714	ENST00000483009		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000546109	ENST00000373602		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000546109	ENST00000421922		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000546109	ENST00000483009		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000422613	ENST00000373602		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-5UTR	ENST00000422613	ENST00000421922		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
5CDS-3UTR	ENST00000422613	ENST00000483009		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	CCDC28B	chr1	32667514	+
Frame-shit	ENST00000344147	ENST00000422945		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000556068		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000554442		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000328724		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000350249		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000445439		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000334743		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000557095		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000556260		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000556946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000344147	ENST00000557714		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-3CDS	ENST00000479629	ENST00000422945		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000556068		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000554442		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000328724		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000350249		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000445439		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000334743		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000557095		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000556260		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000556946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
3UTR-intron	ENST00000479629	ENST00000557714		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
Frame-shit	ENST00000373714	ENST00000422945		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000556068		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000554442		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000328724		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000350249		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000445439		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000334743		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000557095		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000556260		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000556946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000373714	ENST00000557714		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
Frame-shit	ENST00000546109	ENST00000422945		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000556068		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000554442		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000328724		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000350249		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000445439		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000334743		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000557095		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000556260		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000556946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000546109	ENST00000557714		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
Frame-shit	ENST00000422613	ENST00000422945		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000556068		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000554442		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000328724		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000350249		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000445439		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000334743		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000557095		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000556260		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000556946		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
5CDS-intron	ENST00000422613	ENST00000557714		TCGA	LD	LIHC	TCGA-EP-A2KA-01A	ZCCHC17	chr1	31792013	+	PPP2R5C	chr14	102360844	+
In-frame	ENST00000245907	ENST00000570083		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
In-frame	ENST00000245907	ENST00000355906		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
In-frame	ENST00000245907	ENST00000398131		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
Frame-shit	ENST00000245907	ENST00000569639		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
In-frame	ENST00000245907	ENST00000357763		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
In-frame	ENST00000245907	ENST00000562526		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
5CDS-intron	ENST00000245907	ENST00000565574		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-3CDS	ENST00000599668	ENST00000570083		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-3CDS	ENST00000599668	ENST00000355906		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-3CDS	ENST00000599668	ENST00000398131		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-3CDS	ENST00000599668	ENST00000569639		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-3CDS	ENST00000599668	ENST00000357763		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-3CDS	ENST00000599668	ENST00000562526		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
intron-intron	ENST00000599668	ENST00000565574		TCGA	LD	LIHC	TCGA-EP-A2KC-01A	C3	chr19	6694442	-	HP	chr16	72093016	+
Frame-shit	ENST00000440909	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000440909	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000440909	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000440909	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000448921	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000448921	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000448921	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000448921	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000437397	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000437397	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000437397	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000437397	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000355814	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000355814	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000355814	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000355814	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000393087	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000393087	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000393087	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000393087	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000393088	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000393088	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000393088	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000393088	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000404814	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000404814	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000404814	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000404814	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000449399	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000449399	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000449399	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000449399	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000402629	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000402629	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
In-frame	ENST00000402629	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000402629	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
intron-3CDS	ENST00000555289	ENST00000404648		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
intron-3CDS	ENST00000555289	ENST00000405164		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
intron-3CDS	ENST00000555289	ENST00000336098		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
intron-3CDS	ENST00000555289	ENST00000407946		TCGA	LD	LIHC	TCGA-FV-A23B-01A	SERPINA1	chr14	94847208	-	FGG	chr4	155526218	-
Frame-shit	ENST00000238497	ENST00000398117		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
Frame-shit	ENST00000238497	ENST00000333681		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000238497	ENST00000590515		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000238497	ENST00000589955		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
5CDS-intron	ENST00000238497	ENST00000444484		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-3CDS	ENST00000591519	ENST00000398117		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-3CDS	ENST00000591519	ENST00000333681		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-5UTR	ENST00000591519	ENST00000590515		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-intron	ENST00000591519	ENST00000589955		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-intron	ENST00000591519	ENST00000444484		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-3CDS	ENST00000591383	ENST00000398117		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-3CDS	ENST00000591383	ENST00000333681		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-5UTR	ENST00000591383	ENST00000590515		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-intron	ENST00000591383	ENST00000589955		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
intron-intron	ENST00000591383	ENST00000444484		TCGA	LD	LIHC	TCGA-FV-A23B-01A	VPS4B	chr18	61066475	-	BCL2	chr18	60795992	-
5CDS-5UTR	ENST00000262013	ENST00000584755		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000262013	ENST00000583708		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000262013	ENST00000584398		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000262013	ENST00000578713		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000505279	ENST00000584755		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000505279	ENST00000583708		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000505279	ENST00000584398		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000505279	ENST00000578713		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357122	ENST00000584755		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357122	ENST00000583708		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357122	ENST00000584398		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000357122	ENST00000578713		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000509724	ENST00000584755		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000509724	ENST00000583708		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000509724	ENST00000584398		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000509724	ENST00000578713		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000510283	ENST00000584755		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000510283	ENST00000583708		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000510283	ENST00000584398		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
intron-5UTR	ENST00000510283	ENST00000578713		TCGA	LD	LIHC	TCGA-FV-A2QR-01A	SPAG9	chr17	49156945	-	UBBP4	chr17	21730693	+
3UTR-3CDS	ENST00000503191	ENST00000579973		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
3UTR-3CDS	ENST00000503191	ENST00000417602		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
3UTR-3CDS	ENST00000503191	ENST00000317932		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
3UTR-3CDS	ENST00000503191	ENST00000408011		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
3UTR-3CDS	ENST00000503191	ENST00000580059		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
3UTR-intron	ENST00000503191	ENST00000584630		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000382020	ENST00000579973		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000382020	ENST00000417602		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000382020	ENST00000317932		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000382020	ENST00000408011		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000382020	ENST00000580059		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-intron	ENST00000382020	ENST00000584630		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000506802	ENST00000579973		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000506802	ENST00000417602		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000506802	ENST00000317932		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000506802	ENST00000408011		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000506802	ENST00000580059		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-intron	ENST00000506802	ENST00000584630		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000509380	ENST00000579973		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000509380	ENST00000417602		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000509380	ENST00000317932		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000509380	ENST00000408011		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000509380	ENST00000580059		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-intron	ENST00000509380	ENST00000584630		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000503731	ENST00000579973		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000503731	ENST00000417602		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000503731	ENST00000317932		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000503731	ENST00000408011		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-3CDS	ENST00000503731	ENST00000580059		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
intron-intron	ENST00000503731	ENST00000584630		TCGA	LD	LIHC	TCGA-FV-A3I1-01A	TUSC3	chr8	15274814	+	KCTD1	chr18	24039889	-
5CDS-3UTR	ENST00000216455	ENST00000245865		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000216455	ENST00000375840		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000216455	ENST00000392950		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000216455	ENST00000336174		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000216455	ENST00000447001		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000216455	ENST00000582137		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-5UTR	ENST00000216455	ENST00000580039		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-intron	ENST00000216455	ENST00000579340		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000412908	ENST00000245865		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000412908	ENST00000375840		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000412908	ENST00000392950		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000412908	ENST00000336174		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000412908	ENST00000447001		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000412908	ENST00000582137		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-5UTR	ENST00000412908	ENST00000580039		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-intron	ENST00000412908	ENST00000579340		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000557508	ENST00000245865		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000557508	ENST00000375840		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000557508	ENST00000392950		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000557508	ENST00000336174		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000557508	ENST00000447001		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-3UTR	ENST00000557508	ENST00000582137		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-5UTR	ENST00000557508	ENST00000580039		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
5CDS-intron	ENST00000557508	ENST00000579340		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3UTR	ENST00000554456	ENST00000245865		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3UTR	ENST00000554456	ENST00000375840		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3UTR	ENST00000554456	ENST00000392950		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3UTR	ENST00000554456	ENST00000336174		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3UTR	ENST00000554456	ENST00000447001		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3UTR	ENST00000554456	ENST00000582137		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-5UTR	ENST00000554456	ENST00000580039		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-intron	ENST00000554456	ENST00000579340		TCGA	LD	LIHC	TCGA-FV-A495-01A	PSMA3	chr14	58724716	+	STRADA	chr17	61781407	-
intron-3CDS	ENST00000297261	ENST00000287611		TCGA	LD	LIHC	TCGA-FV-A495-01A	SHH	chr7	155595728	-	KNG1	chr3	186459311	+
intron-3CDS	ENST00000297261	ENST00000265023		TCGA	LD	LIHC	TCGA-FV-A495-01A	SHH	chr7	155595728	-	KNG1	chr3	186459311	+
intron-3CDS	ENST00000297261	ENST00000447445		TCGA	LD	LIHC	TCGA-FV-A495-01A	SHH	chr7	155595728	-	KNG1	chr3	186459311	+
intron-3CDS	ENST00000472308	ENST00000287611		TCGA	LD	LIHC	TCGA-FV-A495-01A	SHH	chr7	155595728	-	KNG1	chr3	186459311	+
intron-3CDS	ENST00000472308	ENST00000265023		TCGA	LD	LIHC	TCGA-FV-A495-01A	SHH	chr7	155595728	-	KNG1	chr3	186459311	+
intron-3CDS	ENST00000472308	ENST00000447445		TCGA	LD	LIHC	TCGA-FV-A495-01A	SHH	chr7	155595728	-	KNG1	chr3	186459311	+
Frame-shit	ENST00000367070	ENST00000294981		TCGA	LD	LIHC	TCGA-FV-A496-01A	C4BPA	chr1	207307937	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000367070	ENST00000367103		TCGA	LD	LIHC	TCGA-FV-A496-01A	C4BPA	chr1	207307937	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000367070	ENST00000479009		TCGA	LD	LIHC	TCGA-FV-A496-01A	C4BPA	chr1	207307937	+	MAPKAPK2	chr1	206902055	+
5CDS-5UTR	ENST00000271915	ENST00000368465		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-5UTR	ENST00000271915	ENST00000368463		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000271915	ENST00000539880		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000271915	ENST00000542459		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000271915	ENST00000368460		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000271915	ENST00000498553		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-5UTR	ENST00000361147	ENST00000368465		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-5UTR	ENST00000361147	ENST00000368463		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000361147	ENST00000539880		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000361147	ENST00000542459		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000361147	ENST00000368460		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000361147	ENST00000498553		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-5UTR	ENST00000358505	ENST00000368465		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-5UTR	ENST00000358505	ENST00000368463		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000358505	ENST00000539880		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000358505	ENST00000542459		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000358505	ENST00000368460		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
5CDS-intron	ENST00000358505	ENST00000498553		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-5UTR	ENST00000515643	ENST00000368465		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-5UTR	ENST00000515643	ENST00000368463		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-intron	ENST00000515643	ENST00000539880		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-intron	ENST00000515643	ENST00000542459		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-intron	ENST00000515643	ENST00000368460		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-intron	ENST00000515643	ENST00000498553		TCGA	LD	LIHC	TCGA-FV-A496-01A	KCNN3	chr1	154705479	-	PBXIP1	chr1	154924397	-
intron-3CDS	ENST00000262811	ENST00000324096		TCGA	LD	LIHC	TCGA-FV-A496-01A	MAST3	chr19	18221551	+	MAP1S	chr19	17831745	+
intron-intron	ENST00000262811	ENST00000597681		TCGA	LD	LIHC	TCGA-FV-A496-01A	MAST3	chr19	18221551	+	MAP1S	chr19	17831745	+
intron-intron	ENST00000262811	ENST00000544059		TCGA	LD	LIHC	TCGA-FV-A496-01A	MAST3	chr19	18221551	+	MAP1S	chr19	17831745	+
3UTR-3CDS	ENST00000608648	ENST00000324096		TCGA	LD	LIHC	TCGA-FV-A496-01A	MAST3	chr19	18221551	+	MAP1S	chr19	17831745	+
3UTR-intron	ENST00000608648	ENST00000597681		TCGA	LD	LIHC	TCGA-FV-A496-01A	MAST3	chr19	18221551	+	MAP1S	chr19	17831745	+
3UTR-intron	ENST00000608648	ENST00000544059		TCGA	LD	LIHC	TCGA-FV-A496-01A	MAST3	chr19	18221551	+	MAP1S	chr19	17831745	+
In-frame	ENST00000331134	ENST00000331204		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
In-frame	ENST00000331134	ENST00000505490		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
5CDS-5UTR	ENST00000331134	ENST00000512673		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
In-frame	ENST00000374747	ENST00000331204		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
In-frame	ENST00000374747	ENST00000505490		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
5CDS-5UTR	ENST00000374747	ENST00000512673		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
Frame-shit	ENST00000539314	ENST00000331204		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
Frame-shit	ENST00000539314	ENST00000505490		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
5CDS-5UTR	ENST00000539314	ENST00000512673		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000572760	ENST00000331204		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000572760	ENST00000505490		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-5UTR	ENST00000572760	ENST00000512673		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000573876	ENST00000331204		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000573876	ENST00000505490		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-5UTR	ENST00000573876	ENST00000512673		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000574344	ENST00000331204		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-3CDS	ENST00000574344	ENST00000505490		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
intron-5UTR	ENST00000574344	ENST00000512673		TCGA	LD	LIHC	TCGA-FV-A496-01A	NPLOC4	chr17	79567367	-	ALYREF	chr17	79848696	-
In-frame	ENST00000373719	ENST00000535149		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373719	ENST00000276079		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373719	ENST00000373856		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373719	ENST00000373841		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
5CDS-3UTR	ENST00000373719	ENST00000490044		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373701	ENST00000535149		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373701	ENST00000276079		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373701	ENST00000373856		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000373701	ENST00000373841		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
5CDS-3UTR	ENST00000373701	ENST00000490044		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
intron-3CDS	ENST00000498566	ENST00000535149		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
intron-3CDS	ENST00000498566	ENST00000276079		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
intron-3CDS	ENST00000498566	ENST00000373856		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
intron-3CDS	ENST00000498566	ENST00000373841		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
intron-3UTR	ENST00000498566	ENST00000490044		TCGA	LD	LIHC	TCGA-FV-A496-01A	OGT	chrX	70774442	+	NONO	chrX	70516415	+
In-frame	ENST00000399568	ENST00000329517		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000399568	ENST00000403325		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000399568	ENST00000405009		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
5CDS-5UTR	ENST00000399568	ENST00000460402		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000542103	ENST00000329517		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000542103	ENST00000403325		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000542103	ENST00000405009		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
5CDS-5UTR	ENST00000542103	ENST00000460402		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000399562	ENST00000329517		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000399562	ENST00000403325		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000399562	ENST00000405009		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
5CDS-5UTR	ENST00000399562	ENST00000460402		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000333059	ENST00000329517		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000333059	ENST00000403325		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
In-frame	ENST00000333059	ENST00000405009		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
5CDS-5UTR	ENST00000333059	ENST00000460402		TCGA	LD	LIHC	TCGA-FV-A4ZP-01A	C22orf39	chr22	19434901	-	GNB1L	chr22	19789739	-
intron-3CDS	ENST00000390548	ENST00000371464		TCGA	LD	LIHC	TCGA-FV-A4ZQ-01A	IGHG1	chr14	106208402	-	RBP4	chr10	95360728	-
intron-3CDS	ENST00000390548	ENST00000371467		TCGA	LD	LIHC	TCGA-FV-A4ZQ-01A	IGHG1	chr14	106208402	-	RBP4	chr10	95360728	-
intron-3CDS	ENST00000390548	ENST00000371469		TCGA	LD	LIHC	TCGA-FV-A4ZQ-01A	IGHG1	chr14	106208402	-	RBP4	chr10	95360728	-
5UTR-3CDS	ENST00000373100	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373100	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373100	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373100	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000373100	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373092	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373092	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373092	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373092	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000373092	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373077	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373077	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373077	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3CDS	ENST00000373077	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
5UTR-3UTR	ENST00000373077	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000423407	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000423407	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000423407	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000423407	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000423407	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000341458	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000341458	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000341458	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000341458	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000341458	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000426287	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000426287	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000426287	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000426287	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000426287	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000485914	ENST00000373710		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000485914	ENST00000536859		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000485914	ENST00000373709		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3CDS	ENST00000485914	ENST00000536384		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
intron-3UTR	ENST00000485914	ENST00000491976		TCGA	LD	LIHC	TCGA-G3-A25S-01A	SGK2	chr20	42187799	+	SERINC2	chr1	31905814	+
Frame-shit	ENST00000181383	ENST00000242848		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
Frame-shit	ENST00000181383	ENST00000378921		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
Frame-shit	ENST00000181383	ENST00000282007		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
5CDS-intron	ENST00000181383	ENST00000470308		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
Frame-shit	ENST00000439329	ENST00000242848		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
Frame-shit	ENST00000439329	ENST00000378921		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
Frame-shit	ENST00000439329	ENST00000282007		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
5CDS-intron	ENST00000439329	ENST00000470308		TCGA	LD	LIHC	TCGA-G3-A25U-01A	CPB2	chr13	46648008	-	ZC3H13	chr13	46542163	-
Frame-shit	ENST00000318602	ENST00000339766		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	A2M	chr12	9220779	-	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000318602	ENST00000455827		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	A2M	chr12	9220779	-	CLEC2A	chr12	10051575	-
intron-3CDS	ENST00000542567	ENST00000339766		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	A2M	chr12	9220779	-	CLEC2A	chr12	10051575	-
intron-intron	ENST00000542567	ENST00000455827		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	A2M	chr12	9220779	-	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000438796	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000438796	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000438796	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000414675	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000414675	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000414675	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000441090	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000441090	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000441090	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000334859	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000334859	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000334859	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000425562	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000425562	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000425562	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
intron-intron	ENST00000493726	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
intron-intron	ENST00000493726	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
intron-intron	ENST00000493726	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000536618	ENST00000475480		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000536618	ENST00000421852		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-intron	ENST00000536618	ENST00000296254		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	LRCH3	chr3	197598333	+	TMEM41A	chr3	185201188	-
5CDS-5UTR	ENST00000589123	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000589123	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-5UTR	ENST00000346156	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000346156	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-5UTR	ENST00000395111	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000395111	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-5UTR	ENST00000586919	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000586919	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-5UTR	ENST00000341919	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000341919	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-5UTR	ENST00000590282	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000590282	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-5UTR	ENST00000443272	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
5CDS-intron	ENST00000443272	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
intron-5UTR	ENST00000588839	ENST00000333651		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
intron-intron	ENST00000588839	ENST00000585741		TCGA	LD	LIHC	TCGA-G3-A3CG-01A	NFIC	chr19	3452664	+	HMG20B	chr19	3573290	+
In-frame	ENST00000265132	ENST00000371464		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	AMBP	chr9	116823704	-	RBP4	chr10	95353792	-
In-frame	ENST00000265132	ENST00000371467		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	AMBP	chr9	116823704	-	RBP4	chr10	95353792	-
In-frame	ENST00000265132	ENST00000371469		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	AMBP	chr9	116823704	-	RBP4	chr10	95353792	-
In-frame	ENST00000302068	ENST00000570083		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000302068	ENST00000355906		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000302068	ENST00000398131		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
Frame-shit	ENST00000302068	ENST00000569639		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000302068	ENST00000357763		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000302068	ENST00000562526		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
5CDS-intron	ENST00000302068	ENST00000565574		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000509493	ENST00000570083		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000509493	ENST00000355906		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000509493	ENST00000398131		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
Frame-shit	ENST00000509493	ENST00000569639		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000509493	ENST00000357763		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
In-frame	ENST00000509493	ENST00000562526		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
5CDS-intron	ENST00000509493	ENST00000565574		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-3CDS	ENST00000502545	ENST00000570083		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-3CDS	ENST00000502545	ENST00000355906		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-3CDS	ENST00000502545	ENST00000398131		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-3CDS	ENST00000502545	ENST00000569639		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-3CDS	ENST00000502545	ENST00000357763		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-3CDS	ENST00000502545	ENST00000562526		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
3UTR-intron	ENST00000502545	ENST00000565574		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	FGB	chr4	155489646	+	HP	chr16	72093016	+
5CDS-5UTR	ENST00000357214	ENST00000230323		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000358871		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000420312		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000403298		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000373033		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000394283		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000230323		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000358871		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000420312		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000403298		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000373033		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000394283		TCGA	LD	LIHC	TCGA-G3-A3CI-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
Frame-shit	ENST00000438132	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
5CDS-intron	ENST00000438132	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
Frame-shit	ENST00000542263	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
5CDS-intron	ENST00000542263	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
Frame-shit	ENST00000417362	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
5CDS-intron	ENST00000417362	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
Frame-shit	ENST00000251143	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
5CDS-intron	ENST00000251143	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
Frame-shit	ENST00000543152	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
5CDS-intron	ENST00000543152	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
Frame-shit	ENST00000448695	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
5CDS-intron	ENST00000448695	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
intron-3CDS	ENST00000544275	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
intron-intron	ENST00000544275	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
3UTR-3CDS	ENST00000538853	ENST00000263408		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
3UTR-intron	ENST00000538853	ENST00000509186		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	C16orf62	chr16	19613045	+	C9	chr5	39285335	-
In-frame	ENST00000316403	ENST00000371464		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
In-frame	ENST00000316403	ENST00000371467		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
In-frame	ENST00000316403	ENST00000371469		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000546343	ENST00000371464		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000546343	ENST00000371467		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000546343	ENST00000371469		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000560366	ENST00000371464		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000560366	ENST00000371467		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000560366	ENST00000371469		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000405140	ENST00000371464		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000405140	ENST00000371467		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000405140	ENST00000371469		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000523500	ENST00000371464		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000523500	ENST00000371467		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
Frame-shit	ENST00000523500	ENST00000371469		TCGA	LD	LIHC	TCGA-G3-A5SM-01A	CLU	chr8	27455977	-	RBP4	chr10	95353792	-
intron-intron	ENST00000406938	ENST00000341832		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000406938	ENST00000340677		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000406938	ENST00000407249		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000406938	ENST00000317673		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000463053	ENST00000341832		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000463053	ENST00000340677		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000463053	ENST00000407249		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-intron	ENST00000463053	ENST00000317673		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	CHKB	chr22	51018627	-	CDK11B	chr1	1571024	-
intron-5UTR	ENST00000448637	ENST00000373176		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000448637	ENST00000373156		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-intron	ENST00000448637	ENST00000223836		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000312675	ENST00000373176		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000312675	ENST00000373156		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-intron	ENST00000312675	ENST00000223836		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000543006	ENST00000373176		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000543006	ENST00000373156		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-intron	ENST00000543006	ENST00000223836		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000471917	ENST00000373176		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-5UTR	ENST00000471917	ENST00000373156		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
intron-intron	ENST00000471917	ENST00000223836		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	LPP	chr3	187871809	+	AK1	chr9	130636928	-
Frame-shit	ENST00000262948	ENST00000372663		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
Frame-shit	ENST00000262948	ENST00000372672		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
Frame-shit	ENST00000262948	ENST00000372667		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
5CDS-5UTR	ENST00000262948	ENST00000467312		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
In-frame	ENST00000394867	ENST00000372663		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
In-frame	ENST00000394867	ENST00000372672		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
In-frame	ENST00000394867	ENST00000372667		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
5CDS-5UTR	ENST00000394867	ENST00000467312		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
intron-3CDS	ENST00000599345	ENST00000372663		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
intron-3CDS	ENST00000599345	ENST00000372672		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
intron-3CDS	ENST00000599345	ENST00000372667		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
intron-5UTR	ENST00000599345	ENST00000467312		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	MAP2K2	chr19	4097277	-	ZDHHC12	chr9	131484853	-
5CDS-5UTR	ENST00000202677	ENST00000319441		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	RALGAPA2	chr20	20693018	-	PCK1	chr20	56136428	+
5CDS-5UTR	ENST00000202677	ENST00000543666		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	RALGAPA2	chr20	20693018	-	PCK1	chr20	56136428	+
5CDS-intron	ENST00000202677	ENST00000535860		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	RALGAPA2	chr20	20693018	-	PCK1	chr20	56136428	+
intron-5UTR	ENST00000495793	ENST00000319441		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	RALGAPA2	chr20	20693018	-	PCK1	chr20	56136428	+
intron-5UTR	ENST00000495793	ENST00000543666		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	RALGAPA2	chr20	20693018	-	PCK1	chr20	56136428	+
intron-intron	ENST00000495793	ENST00000535860		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	RALGAPA2	chr20	20693018	-	PCK1	chr20	56136428	+
Frame-shit	ENST00000264657	ENST00000368521		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000264657	ENST00000362076		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000264657	ENST00000350592		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000264657	ENST00000368519		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-5UTR	ENST00000264657	ENST00000483282		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000264657	ENST00000368518		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000264657	ENST00000368516		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000585517	ENST00000368521		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000585517	ENST00000362076		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000585517	ENST00000350592		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000585517	ENST00000368519		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-5UTR	ENST00000585517	ENST00000483282		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000585517	ENST00000368518		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000585517	ENST00000368516		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000389272	ENST00000368521		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000389272	ENST00000362076		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000389272	ENST00000350592		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000389272	ENST00000368519		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-5UTR	ENST00000389272	ENST00000483282		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000389272	ENST00000368518		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000389272	ENST00000368516		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000588969	ENST00000368521		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000588969	ENST00000362076		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000588969	ENST00000350592		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000588969	ENST00000368519		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-5UTR	ENST00000588969	ENST00000483282		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000588969	ENST00000368518		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000588969	ENST00000368516		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000404395	ENST00000368521		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000404395	ENST00000362076		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000404395	ENST00000350592		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
In-frame	ENST00000404395	ENST00000368519		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-5UTR	ENST00000404395	ENST00000483282		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000404395	ENST00000368518		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
5CDS-intron	ENST00000404395	ENST00000368516		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-3CDS	ENST00000590776	ENST00000368521		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-3CDS	ENST00000590776	ENST00000362076		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-3CDS	ENST00000590776	ENST00000350592		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-3CDS	ENST00000590776	ENST00000368519		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-5UTR	ENST00000590776	ENST00000483282		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-intron	ENST00000590776	ENST00000368518		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
intron-intron	ENST00000590776	ENST00000368516		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	C1orf43	chr1	154180124	-
Frame-shit	ENST00000264657	ENST00000368533		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000264657	ENST00000469717		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000264657	ENST00000330188		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000264657	ENST00000341485		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000264657	ENST00000341372		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000264657	ENST00000328159		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000264657	ENST00000271850		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000264657	ENST00000302206		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000264657	ENST00000368531		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000264657	ENST00000323144		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000264657	ENST00000368530		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
Frame-shit	ENST00000585517	ENST00000368533		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000585517	ENST00000469717		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000585517	ENST00000330188		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000585517	ENST00000341485		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000585517	ENST00000341372		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000585517	ENST00000328159		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000585517	ENST00000271850		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000585517	ENST00000302206		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000585517	ENST00000368531		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000585517	ENST00000323144		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000585517	ENST00000368530		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
Frame-shit	ENST00000389272	ENST00000368533		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000389272	ENST00000469717		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000389272	ENST00000330188		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000389272	ENST00000341485		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000389272	ENST00000341372		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000389272	ENST00000328159		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000389272	ENST00000271850		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000389272	ENST00000302206		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000389272	ENST00000368531		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000389272	ENST00000323144		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000389272	ENST00000368530		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
Frame-shit	ENST00000588969	ENST00000368533		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000588969	ENST00000469717		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000588969	ENST00000330188		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000588969	ENST00000341485		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000588969	ENST00000341372		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000588969	ENST00000328159		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000588969	ENST00000271850		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000588969	ENST00000302206		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000588969	ENST00000368531		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000588969	ENST00000323144		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000588969	ENST00000368530		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
Frame-shit	ENST00000404395	ENST00000368533		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000404395	ENST00000469717		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000404395	ENST00000330188		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000404395	ENST00000341485		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000404395	ENST00000341372		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000404395	ENST00000328159		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000404395	ENST00000271850		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000404395	ENST00000302206		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000404395	ENST00000368531		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000404395	ENST00000323144		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000404395	ENST00000368530		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-3CDS	ENST00000590776	ENST00000368533		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-intron	ENST00000590776	ENST00000469717		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-intron	ENST00000590776	ENST00000330188		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-intron	ENST00000590776	ENST00000341485		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-intron	ENST00000590776	ENST00000341372		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-intron	ENST00000590776	ENST00000328159		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-intron	ENST00000590776	ENST00000271850		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000590776	ENST00000302206		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000590776	ENST00000368531		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000590776	ENST00000323144		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000590776	ENST00000368530		TCGA	LD	LIHC	TCGA-G3-A7M7-01A	STAT3	chr17	40497577	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000403766	ENST00000175506		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
5CDS-5UTR	ENST00000403766	ENST00000394309		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
5CDS-intron	ENST00000403766	ENST00000437628		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
5CDS-5UTR	ENST00000403766	ENST00000394308		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
5CDS-intron	ENST00000403766	ENST00000422745		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
5CDS-intron	ENST00000403766	ENST00000455086		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
5CDS-intron	ENST00000403766	ENST00000444334		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-5UTR	ENST00000376440	ENST00000175506		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-5UTR	ENST00000376440	ENST00000394309		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000376440	ENST00000437628		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-5UTR	ENST00000376440	ENST00000394308		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000376440	ENST00000422745		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000376440	ENST00000455086		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000376440	ENST00000444334		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-5UTR	ENST00000460562	ENST00000175506		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-5UTR	ENST00000460562	ENST00000394309		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000460562	ENST00000437628		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-5UTR	ENST00000460562	ENST00000394308		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000460562	ENST00000422745		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000460562	ENST00000455086		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
intron-intron	ENST00000460562	ENST00000444334		TCGA	LD	LIHC	TCGA-G3-A7M9-01A	UBAC2	chr13	99896878	+	ASNS	chr7	97498491	-
Frame-shit	ENST00000373424	ENST00000284262		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
5CDS-3UTR	ENST00000373424	ENST00000563609		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
3UTR-3CDS	ENST00000480628	ENST00000284262		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
3UTR-3UTR	ENST00000480628	ENST00000563609		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
Frame-shit	ENST00000305139	ENST00000284262		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
5CDS-3UTR	ENST00000305139	ENST00000563609		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
Frame-shit	ENST00000406651	ENST00000284262		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
5CDS-3UTR	ENST00000406651	ENST00000563609		TCGA	LD	LIHC	TCGA-G3-AAV3-01A	UGT1A6	chr2	234602511	+	JPH3	chr16	87723252	+
5CDS-5UTR	ENST00000538689	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000538689	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000538689	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000538689	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000220584	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000220584	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000220584	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000220584	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
intron-5UTR	ENST00000446331	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
intron-intron	ENST00000446331	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
intron-5UTR	ENST00000446331	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
intron-intron	ENST00000446331	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000443614	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000443614	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000443614	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000443614	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000525900	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000525900	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000525900	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000525900	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000528812	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000528812	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000528812	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000528812	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000530664	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000530664	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000530664	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000530664	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000528643	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000528643	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000528643	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000528643	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000525777	ENST00000519846		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000525777	ENST00000518592		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-5UTR	ENST00000525777	ENST00000325897		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5CDS-intron	ENST00000525777	ENST00000518858		TCGA	LD	LIHC	TCGA-GJ-A3OU-01A	FDFT1	chr8	11667359	+	CLVS1	chr8	62212236	+
5UTR-3CDS	ENST00000284000	ENST00000170564		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CEBPG	chr19	33864801	+	GPATCH1	chr19	33604673	+
intron-3CDS	ENST00000585933	ENST00000170564		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CEBPG	chr19	33864801	+	GPATCH1	chr19	33604673	+
Frame-shit	ENST00000465271	ENST00000318006		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000465271	ENST00000348544		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
5CDS-intron	ENST00000465271	ENST00000568357		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000366858	ENST00000318006		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000366858	ENST00000348544		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
5CDS-intron	ENST00000366858	ENST00000568357		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000366857	ENST00000318006		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000366857	ENST00000348544		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
5CDS-intron	ENST00000366857	ENST00000568357		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
3UTR-3CDS	ENST00000468318	ENST00000318006		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
3UTR-3CDS	ENST00000468318	ENST00000348544		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
3UTR-intron	ENST00000468318	ENST00000568357		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000366856	ENST00000318006		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
Frame-shit	ENST00000366856	ENST00000348544		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
5CDS-intron	ENST00000366856	ENST00000568357		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	CNIH4	chr1	224553693	+	VPS39	chr15	42459111	-
In-frame	ENST00000306869	ENST00000328666		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	DCXR	chr17	79994597	-	SIRT7	chr17	79873557	-
5UTR-3CDS	ENST00000584318	ENST00000328666		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	DCXR	chr17	79994597	-	SIRT7	chr17	79873557	-
In-frame	ENST00000383812	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000383812	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000383812	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000383812	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000383812	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000383812	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000383812	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000383812	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000295981	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000295981	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000295981	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000295981	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000295981	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000295981	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000295981	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000295981	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-3CDS	ENST00000498214	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-3CDS	ENST00000498214	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-5UTR	ENST00000498214	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-5UTR	ENST00000498214	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-5UTR	ENST00000498214	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-intron	ENST00000498214	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-intron	ENST00000498214	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
3UTR-intron	ENST00000498214	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000403601	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000403601	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000403601	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000403601	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000403601	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000403601	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000403601	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000403601	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000416074	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000416074	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000416074	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000416074	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000416074	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000416074	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000416074	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000416074	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000455057	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000455057	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000455057	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000455057	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000455057	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000455057	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000455057	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000455057	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000413608	ENST00000426895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
In-frame	ENST00000413608	ENST00000547186		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000413608	ENST00000397241		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000413608	ENST00000427853		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-5UTR	ENST00000413608	ENST00000383827		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000413608	ENST00000455274		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000413608	ENST00000430793		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
5CDS-intron	ENST00000413608	ENST00000466245		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	IL17RC	chr3	9974387	+	TTLL3	chr3	9860506	+
intron-3CDS	ENST00000538936	ENST00000306897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	PCYT2	chr17	79860055	-	RAC3	chr17	79990647	+
intron-3CDS	ENST00000331285	ENST00000306897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	PCYT2	chr17	79860055	-	RAC3	chr17	79990647	+
intron-3CDS	ENST00000538721	ENST00000306897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	PCYT2	chr17	79860055	-	RAC3	chr17	79990647	+
intron-3CDS	ENST00000571105	ENST00000306897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	PCYT2	chr17	79860055	-	RAC3	chr17	79990647	+
intron-3CDS	ENST00000570391	ENST00000306897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	PCYT2	chr17	79860055	-	RAC3	chr17	79990647	+
intron-3CDS	ENST00000570388	ENST00000306897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	PCYT2	chr17	79860055	-	RAC3	chr17	79990647	+
intron-3CDS	ENST00000325874	ENST00000356175		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-3CDS	ENST00000325874	ENST00000358273		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000325874	ENST00000431387		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000325874	ENST00000581113		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000325874	ENST00000417592		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000325874	ENST00000444181		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-3CDS	ENST00000581280	ENST00000356175		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-3CDS	ENST00000581280	ENST00000358273		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000581280	ENST00000431387		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000581280	ENST00000581113		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000581280	ENST00000417592		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
intron-intron	ENST00000581280	ENST00000444181		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
In-frame	ENST00000394744	ENST00000356175		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
In-frame	ENST00000394744	ENST00000358273		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
5CDS-intron	ENST00000394744	ENST00000431387		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
5CDS-intron	ENST00000394744	ENST00000581113		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
5CDS-intron	ENST00000394744	ENST00000417592		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
5CDS-intron	ENST00000394744	ENST00000444181		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	RAB11FIP4	chr17	29815290	+	NF1	chr17	29701031	+
In-frame	ENST00000271640	ENST00000368917		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000271640	ENST00000368918		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000271640	ENST00000368916		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
5CDS-intron	ENST00000271640	ENST00000467551		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368962	ENST00000368917		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368962	ENST00000368918		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368962	ENST00000368916		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
5CDS-intron	ENST00000368962	ENST00000467551		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368969	ENST00000368917		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368969	ENST00000368918		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368969	ENST00000368916		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
5CDS-intron	ENST00000368969	ENST00000467551		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368963	ENST00000368917		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368963	ENST00000368918		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
In-frame	ENST00000368963	ENST00000368916		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
5CDS-intron	ENST00000368963	ENST00000467551		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
3UTR-3CDS	ENST00000459773	ENST00000368917		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
3UTR-3CDS	ENST00000459773	ENST00000368918		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
3UTR-3CDS	ENST00000459773	ENST00000368916		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
3UTR-intron	ENST00000459773	ENST00000467551		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SETDB1	chr1	150902594	+	GABPB2	chr1	151089868	+
5UTR-3CDS	ENST00000295958	ENST00000349703		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
5UTR-3CDS	ENST00000295958	ENST00000381897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
5UTR-intron	ENST00000295958	ENST00000418436		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
5UTR-3CDS	ENST00000511809	ENST00000349703		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
5UTR-3CDS	ENST00000511809	ENST00000381897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
5UTR-intron	ENST00000511809	ENST00000418436		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
intron-3CDS	ENST00000510628	ENST00000349703		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
intron-3CDS	ENST00000510628	ENST00000381897		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
intron-intron	ENST00000510628	ENST00000418436		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	SMIM14	chr4	39640359	-	RFC1	chr4	39314551	-
3UTR-3CDS	ENST00000307179	ENST00000320895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000307179	ENST00000507807		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000307179	ENST00000320927		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-5UTR	ENST00000307179	ENST00000506641		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000433963	ENST00000320895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000433963	ENST00000507807		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000433963	ENST00000320927		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-5UTR	ENST00000433963	ENST00000506641		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000396444	ENST00000320895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000396444	ENST00000507807		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000396444	ENST00000320927		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-5UTR	ENST00000396444	ENST00000506641		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000425032	ENST00000320895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000425032	ENST00000507807		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-3CDS	ENST00000425032	ENST00000320927		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
3UTR-5UTR	ENST00000425032	ENST00000506641		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
intron-3CDS	ENST00000558892	ENST00000320895		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
intron-3CDS	ENST00000558892	ENST00000507807		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
intron-3CDS	ENST00000558892	ENST00000320927		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
intron-5UTR	ENST00000558892	ENST00000506641		TCGA	LD	LIHC	TCGA-GJ-A6C0-01A	USP8	chr15	50791295	+	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000337537	ENST00000416007		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
Frame-shit	ENST00000337537	ENST00000318473		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
Frame-shit	ENST00000337537	ENST00000359527		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
5CDS-intron	ENST00000337537	ENST00000603913		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
Frame-shit	ENST00000555899	ENST00000416007		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
Frame-shit	ENST00000555899	ENST00000318473		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
Frame-shit	ENST00000555899	ENST00000359527		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
5CDS-intron	ENST00000555899	ENST00000603913		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
intron-3CDS	ENST00000422769	ENST00000416007		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
intron-3CDS	ENST00000422769	ENST00000318473		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
intron-3CDS	ENST00000422769	ENST00000359527		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
intron-intron	ENST00000422769	ENST00000603913		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
5UTR-3CDS	ENST00000553266	ENST00000416007		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
5UTR-3CDS	ENST00000553266	ENST00000318473		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
5UTR-3CDS	ENST00000553266	ENST00000359527		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
5UTR-intron	ENST00000553266	ENST00000603913		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PPP2R5E	chr14	64006247	-	MBIP	chr14	36784121	-
In-frame	ENST00000338910	ENST00000267273		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PSPC1	chr13	20356526	-	METTL21C	chr13	103339407	-
intron-3CDS	ENST00000497722	ENST00000267273		TCGA	LD	LIHC	TCGA-GJ-A9DB-01A	PSPC1	chr13	20356526	-	METTL21C	chr13	103339407	-
Frame-shit	ENST00000499023	ENST00000404648		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000499023	ENST00000405164		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000499023	ENST00000336098		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000499023	ENST00000407946		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000393905	ENST00000404648		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000393905	ENST00000405164		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000393905	ENST00000336098		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000393905	ENST00000407946		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000302078	ENST00000404648		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000302078	ENST00000405164		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000302078	ENST00000336098		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
Frame-shit	ENST00000302078	ENST00000407946		TCGA	LD	LIHC	TCGA-HP-A5MZ-01A	PLRG1	chr4	155465597	-	FGG	chr4	155528134	-
5CDS-5UTR	ENST00000544915	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000544915	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000544915	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000544915	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000544915	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000544915	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000544915	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000395901	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000395901	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000395901	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000395901	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000395901	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000395901	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000395901	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000546179	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000546179	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000546179	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000546179	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000546179	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000546179	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000546179	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000311001	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000311001	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000311001	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000311001	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000311001	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000311001	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000311001	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000261178	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000261178	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000261178	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000261178	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000261178	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000261178	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000261178	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000266503	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000266503	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000266503	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000266503	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000266503	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000266503	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000266503	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-5UTR	ENST00000539558	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-5UTR	ENST00000539558	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-5UTR	ENST00000539558	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-5UTR	ENST00000539558	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-5UTR	ENST00000539558	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-5UTR	ENST00000539558	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
3UTR-3UTR	ENST00000539558	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000542388	ENST00000545334		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000542388	ENST00000537927		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000542388	ENST00000318304		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000542388	ENST00000535047		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000542388	ENST00000542629		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000542388	ENST00000228425		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000542388	ENST00000541633		TCGA	LD	LIHC	TCGA-K7-AAU7-01A	ARNTL2	chr12	27521345	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000422508	ENST00000445310		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CD109	chr6	74513024	+	KCNQ5-IT1	chr6	73386819	+
5CDS-3UTR	ENST00000437994	ENST00000445310		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CD109	chr6	74513024	+	KCNQ5-IT1	chr6	73386819	+
5CDS-3UTR	ENST00000287097	ENST00000445310		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CD109	chr6	74513024	+	KCNQ5-IT1	chr6	73386819	+
3UTR-3UTR	ENST00000474094	ENST00000445310		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CD109	chr6	74513024	+	KCNQ5-IT1	chr6	73386819	+
5CDS-intron	ENST00000256413	ENST00000592005		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000256413	ENST00000245121		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000256413	ENST00000356157		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000382998	ENST00000592005		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000382998	ENST00000245121		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000382998	ENST00000356157		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000592658	ENST00000592005		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000592658	ENST00000245121		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
intron-intron	ENST00000592658	ENST00000356157		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	CTIF	chr18	46197115	+	KATNAL2	chr18	44572828	+
intron-3CDS	ENST00000460467	ENST00000314571		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000460467	ENST00000383797		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000460467	ENST00000454502		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000460467	ENST00000402228		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000460467	ENST00000444864		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000460467	ENST00000284995		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000460467	ENST00000415684		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-intron	ENST00000460467	ENST00000475595		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000314571		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000383797		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000454502		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000402228		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000444864		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000284995		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000396755	ENST00000415684		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-intron	ENST00000396755	ENST00000475595		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000314571		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000383797		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000454502		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000402228		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000444864		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000284995		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-3CDS	ENST00000418129	ENST00000415684		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
5UTR-intron	ENST00000418129	ENST00000475595		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000314571		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000383797		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000454502		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000402228		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000444864		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000284995		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-3CDS	ENST00000432376	ENST00000415684		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
intron-intron	ENST00000432376	ENST00000475595		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	PLCL2	chr3	16926865	+	TSEN2	chr3	12560558	+
Frame-shit	ENST00000307980	ENST00000533035		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RAD9A	chr11	67161258	+	MUS81	chr11	65632725	+
Frame-shit	ENST00000307980	ENST00000308110		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RAD9A	chr11	67161258	+	MUS81	chr11	65632725	+
5CDS-intron	ENST00000307980	ENST00000525006		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RAD9A	chr11	67161258	+	MUS81	chr11	65632725	+
intron-3CDS	ENST00000535644	ENST00000533035		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RAD9A	chr11	67161258	+	MUS81	chr11	65632725	+
intron-3CDS	ENST00000535644	ENST00000308110		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RAD9A	chr11	67161258	+	MUS81	chr11	65632725	+
intron-intron	ENST00000535644	ENST00000525006		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RAD9A	chr11	67161258	+	MUS81	chr11	65632725	+
intron-5UTR	ENST00000356728	ENST00000368722		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000356728	ENST00000368723		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000392697	ENST00000368722		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000392697	ENST00000368723		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000318247	ENST00000368722		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
5CDS-5UTR	ENST00000318247	ENST00000368723		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000480719	ENST00000368722		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
intron-5UTR	ENST00000480719	ENST00000368723		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	RORC	chr1	151801905	-	S100A7	chr1	153431506	-
In-frame	ENST00000366514	ENST00000472531		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000366514	ENST00000491356		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000366514	ENST00000340684		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000366514	ENST00000543802		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000366514	ENST00000491848		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
Frame-shit	ENST00000544618	ENST00000472531		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000544618	ENST00000491356		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000544618	ENST00000340684		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000544618	ENST00000543802		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
5CDS-intron	ENST00000544618	ENST00000491848		TCGA	LD	LIHC	TCGA-KR-A7K8-01A	TFB2M	chr1	246711847	-	ZNF124	chr1	247287173	-
In-frame	ENST00000402696	ENST00000570083		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000402696	ENST00000355906		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000402696	ENST00000398131		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
Frame-shit	ENST00000402696	ENST00000569639		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000402696	ENST00000357763		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000402696	ENST00000562526		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
5CDS-intron	ENST00000402696	ENST00000565574		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000264998	ENST00000570083		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000264998	ENST00000355906		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000264998	ENST00000398131		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
Frame-shit	ENST00000264998	ENST00000569639		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000264998	ENST00000357763		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
In-frame	ENST00000264998	ENST00000562526		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
5CDS-intron	ENST00000264998	ENST00000565574		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-3CDS	ENST00000475382	ENST00000570083		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-3CDS	ENST00000475382	ENST00000355906		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-3CDS	ENST00000475382	ENST00000398131		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-3CDS	ENST00000475382	ENST00000569639		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-3CDS	ENST00000475382	ENST00000357763		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-3CDS	ENST00000475382	ENST00000562526		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
intron-intron	ENST00000475382	ENST00000565574		TCGA	LD	LIHC	TCGA-LG-A6GG-01A	TF	chr3	133473515	+	HP	chr16	72093013	+
Frame-shit	ENST00000413366	ENST00000556931		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
Frame-shit	ENST00000413366	ENST00000505139		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
Frame-shit	ENST00000413366	ENST00000368408		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
Frame-shit	ENST00000413366	ENST00000418360		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000413366	ENST00000498667		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
3UTR-3CDS	ENST00000583361	ENST00000556931		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
3UTR-3CDS	ENST00000583361	ENST00000505139		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
3UTR-3CDS	ENST00000583361	ENST00000368408		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
3UTR-3CDS	ENST00000583361	ENST00000418360		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
3UTR-intron	ENST00000583361	ENST00000498667		TCGA	LD	LIHC	TCGA-LG-A9QC-01A	PRKCA	chr17	64302245	+	EFNA3	chr1	155057567	+
5CDS-intron	ENST00000552014	ENST00000299732		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000552014	ENST00000416617		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000552014	ENST00000546692		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000202831	ENST00000299732		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000202831	ENST00000416617		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000202831	ENST00000546692		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000546737	ENST00000299732		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000546737	ENST00000416617		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5CDS-intron	ENST00000546737	ENST00000546692		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5UTR-intron	ENST00000553238	ENST00000299732		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5UTR-intron	ENST00000553238	ENST00000416617		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5UTR-intron	ENST00000553238	ENST00000546692		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
intron-intron	ENST00000550047	ENST00000299732		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
intron-intron	ENST00000550047	ENST00000416617		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
intron-intron	ENST00000550047	ENST00000546692		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
intron-intron	ENST00000549069	ENST00000299732		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
intron-intron	ENST00000549069	ENST00000416617		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
intron-intron	ENST00000549069	ENST00000546692		TCGA	LD	LIHC	TCGA-MI-A75G-01A	SLC8B1	chr12	113770528	-	IQCD	chr12	113638618	-
5UTR-5UTR	ENST00000259407	ENST00000374855		TCGA	LD	LIHC	TCGA-MR-A520-01A	BAAT	chr9	104145752	-	ALDOB	chr9	104193179	-
5UTR-intron	ENST00000259407	ENST00000468981		TCGA	LD	LIHC	TCGA-MR-A520-01A	BAAT	chr9	104145752	-	ALDOB	chr9	104193179	-
intron-5UTR	ENST00000395051	ENST00000374855		TCGA	LD	LIHC	TCGA-MR-A520-01A	BAAT	chr9	104145752	-	ALDOB	chr9	104193179	-
intron-intron	ENST00000395051	ENST00000468981		TCGA	LD	LIHC	TCGA-MR-A520-01A	BAAT	chr9	104145752	-	ALDOB	chr9	104193179	-
In-frame	ENST00000302068	ENST00000302053		TCGA	LD	LIHC	TCGA-MR-A520-01A	FGB	chr4	155484284	+	FGA	chr4	155510714	-
In-frame	ENST00000302068	ENST00000403106		TCGA	LD	LIHC	TCGA-MR-A520-01A	FGB	chr4	155484284	+	FGA	chr4	155510714	-
5UTR-3CDS	ENST00000509493	ENST00000302053		TCGA	LD	LIHC	TCGA-MR-A520-01A	FGB	chr4	155484284	+	FGA	chr4	155510714	-
5UTR-3CDS	ENST00000509493	ENST00000403106		TCGA	LD	LIHC	TCGA-MR-A520-01A	FGB	chr4	155484284	+	FGA	chr4	155510714	-
3UTR-3CDS	ENST00000502545	ENST00000302053		TCGA	LD	LIHC	TCGA-MR-A520-01A	FGB	chr4	155484284	+	FGA	chr4	155510714	-
3UTR-3CDS	ENST00000502545	ENST00000403106		TCGA	LD	LIHC	TCGA-MR-A520-01A	FGB	chr4	155484284	+	FGA	chr4	155510714	-
5CDS-5UTR	ENST00000357214	ENST00000230323		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000358871		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000420312		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000403298		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000373033		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357214	ENST00000394283		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000230323		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000358871		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000420312		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000403298		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000373033		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-5UTR	ENST00000468598	ENST00000394283		TCGA	LD	LIHC	TCGA-MR-A520-01A	SFPQ	chr1	35654604	-	TFEB	chr6	41658973	-
intron-3UTR	ENST00000230323	ENST00000460833		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000230323	ENST00000474768		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000230323	ENST00000481312		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000230323	ENST00000485174		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000358871	ENST00000460833		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000358871	ENST00000474768		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000358871	ENST00000481312		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000358871	ENST00000485174		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000420312	ENST00000460833		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000420312	ENST00000474768		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000420312	ENST00000481312		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000420312	ENST00000485174		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000403298	ENST00000460833		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000403298	ENST00000474768		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000403298	ENST00000481312		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000403298	ENST00000485174		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
5UTR-3UTR	ENST00000373033	ENST00000460833		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
5UTR-3UTR	ENST00000373033	ENST00000474768		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
5UTR-3UTR	ENST00000373033	ENST00000481312		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
5UTR-intron	ENST00000373033	ENST00000485174		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000394283	ENST00000460833		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000394283	ENST00000474768		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000394283	ENST00000481312		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000394283	ENST00000485174		TCGA	LD	LIHC	TCGA-MR-A520-01A	TFEB	chr6	41703088	-	ADAMTS9-AS2	chr3	64785141	+
In-frame	ENST00000430249	ENST00000199940		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000430249	ENST00000360351		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000430249	ENST00000361559		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000430249	ENST00000392194		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000430249	ENST00000447185		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-3UTR	ENST00000430249	ENST00000475600		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
In-frame	ENST00000233072	ENST00000199940		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000233072	ENST00000360351		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000233072	ENST00000361559		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000233072	ENST00000392194		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-intron	ENST00000233072	ENST00000447185		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
5CDS-3UTR	ENST00000233072	ENST00000475600		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-3CDS	ENST00000451903	ENST00000199940		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000451903	ENST00000360351		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000451903	ENST00000361559		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000451903	ENST00000392194		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000451903	ENST00000447185		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-3UTR	ENST00000451903	ENST00000475600		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-3CDS	ENST00000497121	ENST00000199940		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000497121	ENST00000360351		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000497121	ENST00000361559		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000497121	ENST00000392194		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-intron	ENST00000497121	ENST00000447185		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
intron-3UTR	ENST00000497121	ENST00000475600		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	CPS1	chr2	211454958	+	MAP2	chr2	210588319	+
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
Frame-shit	ENST00000239761	ENST00000542434		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	MRC1	chr10	18183241	+	ALOX5	chr10	45877931	+
Frame-shit	ENST00000239761	ENST00000374391		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	MRC1	chr10	18183241	+	ALOX5	chr10	45877931	+
5CDS-intron	ENST00000239761	ENST00000493336		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	MRC1	chr10	18183241	+	ALOX5	chr10	45877931	+
intron-3CDS	ENST00000464451	ENST00000254730		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
intron-3CDS	ENST00000464451	ENST00000483457		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
intron-intron	ENST00000464451	ENST00000483569		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-3CDS	ENST00000243253	ENST00000254730		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-3CDS	ENST00000243253	ENST00000483457		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-intron	ENST00000243253	ENST00000483569		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-3CDS	ENST00000424880	ENST00000254730		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-3CDS	ENST00000424880	ENST00000483457		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-intron	ENST00000424880	ENST00000483569		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-3CDS	ENST00000483956	ENST00000254730		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-3CDS	ENST00000483956	ENST00000483457		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
3UTR-intron	ENST00000483956	ENST00000483569		TCGA	LD	LIHC	TCGA-MR-A8JO-01A	SEC61A1	chr3	127789549	+	EEFSEC	chr3	127965679	+
intron-3CDS	ENST00000296933	ENST00000368559		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000296933	ENST00000368553		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000296933	ENST00000271854		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000265094	ENST00000368559		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000265094	ENST00000368553		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000265094	ENST00000271854		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000393802	ENST00000368559		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000393802	ENST00000368553		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000393802	ENST00000271854		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
5UTR-3CDS	ENST00000425623	ENST00000368559		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
5UTR-3CDS	ENST00000425623	ENST00000368553		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
5UTR-3CDS	ENST00000425623	ENST00000271854		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000522891	ENST00000368559		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000522891	ENST00000368553		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-3CDS	ENST00000522891	ENST00000271854		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	FBXW11	chr5	171423894	-	NUP210L	chr1	154000073	-
intron-5UTR	ENST00000466368	ENST00000493429		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
intron-5UTR	ENST00000466368	ENST00000467291		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
intron-5UTR	ENST00000466368	ENST00000360937		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
intron-5UTR	ENST00000466368	ENST00000416793		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
intron-intron	ENST00000466368	ENST00000480582		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000485713	ENST00000493429		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000485713	ENST00000467291		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000485713	ENST00000360937		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000485713	ENST00000416793		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-intron	ENST00000485713	ENST00000480582		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000413384	ENST00000493429		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000413384	ENST00000467291		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000413384	ENST00000360937		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000413384	ENST00000416793		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-intron	ENST00000413384	ENST00000480582		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000310317	ENST00000493429		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000310317	ENST00000467291		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000310317	ENST00000360937		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000310317	ENST00000416793		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-intron	ENST00000310317	ENST00000480582		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000392826	ENST00000493429		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000392826	ENST00000467291		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000392826	ENST00000360937		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000392826	ENST00000416793		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-intron	ENST00000392826	ENST00000480582		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000461735	ENST00000493429		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000461735	ENST00000467291		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000461735	ENST00000360937		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-5UTR	ENST00000461735	ENST00000416793		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-intron	ENST00000461735	ENST00000480582		TCGA	LD	LIHC	TCGA-NI-A4U2-01A	SLC4A2	chr7	150772595	+	AOC1	chr7	150553543	+
5CDS-intron	ENST00000374379	ENST00000337959		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
5CDS-intron	ENST00000374379	ENST00000263246		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
5CDS-intron	ENST00000374379	ENST00000407585		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
5CDS-intron	ENST00000374379	ENST00000403744		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
5CDS-intron	ENST00000374379	ENST00000402229		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
3UTR-intron	ENST00000497755	ENST00000337959		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
3UTR-intron	ENST00000497755	ENST00000263246		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
3UTR-intron	ENST00000497755	ENST00000407585		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
3UTR-intron	ENST00000497755	ENST00000403744		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
3UTR-intron	ENST00000497755	ENST00000402229		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	CLIC4	chr1	25072116	+	PACSIN2	chr22	43243638	-
Frame-shit	ENST00000354989	ENST00000409939		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ENTPD6	chr20	25199250	+	TBC1D10B	chr16	30376915	-
Frame-shit	ENST00000360031	ENST00000409939		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ENTPD6	chr20	25199250	+	TBC1D10B	chr16	30376915	-
Frame-shit	ENST00000376652	ENST00000409939		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ENTPD6	chr20	25199250	+	TBC1D10B	chr16	30376915	-
Frame-shit	ENST00000433259	ENST00000409939		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ENTPD6	chr20	25199250	+	TBC1D10B	chr16	30376915	-
intron-3CDS	ENST00000485936	ENST00000409939		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ENTPD6	chr20	25199250	+	TBC1D10B	chr16	30376915	-
In-frame	ENST00000441669	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000441669	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000441669	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
In-frame	ENST00000316891	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000316891	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000316891	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
In-frame	ENST00000372818	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000372818	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000372818	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-3CDS	ENST00000491865	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000491865	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000491865	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-3CDS	ENST00000541099	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000541099	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000541099	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-3CDS	ENST00000537440	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000537440	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000537440	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-3CDS	ENST00000537223	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000537223	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000537223	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-3CDS	ENST00000545233	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000545233	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5UTR-5UTR	ENST00000545233	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
In-frame	ENST00000544981	ENST00000305046		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000544981	ENST00000394887		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
5CDS-5UTR	ENST00000544981	ENST00000504498		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1B	chr4	100240043	-
In-frame	ENST00000441669	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5CDS-5UTR	ENST00000441669	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
In-frame	ENST00000316891	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5CDS-5UTR	ENST00000316891	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
In-frame	ENST00000372818	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5CDS-5UTR	ENST00000372818	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-3CDS	ENST00000491865	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-5UTR	ENST00000491865	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-3CDS	ENST00000541099	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-5UTR	ENST00000541099	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-3CDS	ENST00000537440	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-5UTR	ENST00000537440	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-3CDS	ENST00000537223	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-5UTR	ENST00000537223	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-3CDS	ENST00000545233	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5UTR-5UTR	ENST00000545233	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
In-frame	ENST00000544981	ENST00000515683		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5CDS-5UTR	ENST00000544981	ENST00000510055		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	TRIT1	chr1	40348990	-	ADH1C	chr4	100268301	-
5CDS-intron	ENST00000375200	ENST00000375222		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ZNF341	chr20	32354847	+	C20orf144	chr20	32252634	+
5CDS-intron	ENST00000342427	ENST00000375222		TCGA	LD	LIHC	TCGA-PD-A5DF-01A	ZNF341	chr20	32354847	+	C20orf144	chr20	32252634	+
Frame-shit	ENST00000546244	ENST00000334221		TCGA	LD	LIHC	TCGA-QA-A7B7-01A	MCRS1	chr12	49956784	-	C1QL4	chr12	49727016	-
Frame-shit	ENST00000343810	ENST00000334221		TCGA	LD	LIHC	TCGA-QA-A7B7-01A	MCRS1	chr12	49956784	-	C1QL4	chr12	49727016	-
In-frame	ENST00000550165	ENST00000334221		TCGA	LD	LIHC	TCGA-QA-A7B7-01A	MCRS1	chr12	49956784	-	C1QL4	chr12	49727016	-
5UTR-3CDS	ENST00000547182	ENST00000334221		TCGA	LD	LIHC	TCGA-QA-A7B7-01A	MCRS1	chr12	49956784	-	C1QL4	chr12	49727016	-
Frame-shit	ENST00000357123	ENST00000334221		TCGA	LD	LIHC	TCGA-QA-A7B7-01A	MCRS1	chr12	49956784	-	C1QL4	chr12	49727016	-
In-frame	ENST00000443035	ENST00000341861		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000443035	ENST00000358939		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000443035	ENST00000300141		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000443035	ENST00000321147		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000443035	ENST00000321118		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000443035	ENST00000339244		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000443035	ENST00000559233		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-intron	ENST00000443035	ENST00000560048		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
Frame-shit	ENST00000431932	ENST00000341861		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000431932	ENST00000358939		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000431932	ENST00000300141		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000431932	ENST00000321147		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000431932	ENST00000321118		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000431932	ENST00000339244		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-5UTR	ENST00000431932	ENST00000559233		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
5CDS-intron	ENST00000431932	ENST00000560048		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-3CDS	ENST00000567323	ENST00000341861		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-5UTR	ENST00000567323	ENST00000358939		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-5UTR	ENST00000567323	ENST00000300141		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-5UTR	ENST00000567323	ENST00000321147		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-5UTR	ENST00000567323	ENST00000321118		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-5UTR	ENST00000567323	ENST00000339244		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-5UTR	ENST00000567323	ENST00000559233		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
intron-intron	ENST00000567323	ENST00000560048		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DENND4A	chr15	66021410	-	DPP8	chr15	65804902	-
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
3UTR-3CDS	ENST00000574792	ENST00000373548		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	TSSK3	chr1	32819142	+	HDAC1	chr1	32782266	+
3UTR-5UTR	ENST00000574792	ENST00000373541		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	TSSK3	chr1	32819142	+	HDAC1	chr1	32782266	+
3UTR-intron	ENST00000574792	ENST00000490081		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	TSSK3	chr1	32819142	+	HDAC1	chr1	32782266	+
intron-3CDS	ENST00000373534	ENST00000373548		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	TSSK3	chr1	32819142	+	HDAC1	chr1	32782266	+
intron-5UTR	ENST00000373534	ENST00000373541		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	TSSK3	chr1	32819142	+	HDAC1	chr1	32782266	+
intron-intron	ENST00000373534	ENST00000490081		TCGA	LD	LIHC	TCGA-RC-A6M3-01A	TSSK3	chr1	32819142	+	HDAC1	chr1	32782266	+
5UTR-3CDS	ENST00000476844	ENST00000462138		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000476844	ENST00000423525		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000476844	ENST00000461139		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000476844	ENST00000423516		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-5UTR	ENST00000476844	ENST00000296289		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000492590	ENST00000462138		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000492590	ENST00000423525		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000492590	ENST00000461139		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000492590	ENST00000423516		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-5UTR	ENST00000492590	ENST00000296289		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000466788	ENST00000462138		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000466788	ENST00000423525		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-intron	ENST00000466788	ENST00000461139		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-intron	ENST00000466788	ENST00000423516		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-5UTR	ENST00000466788	ENST00000296289		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000468189	ENST00000462138		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000468189	ENST00000423525		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000468189	ENST00000461139		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000468189	ENST00000423516		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
5UTR-5UTR	ENST00000468189	ENST00000296289		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000341848	ENST00000462138		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000341848	ENST00000423525		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-intron	ENST00000341848	ENST00000461139		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-intron	ENST00000341848	ENST00000423516		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
intron-5UTR	ENST00000341848	ENST00000296289		TCGA	LD	LIHC	TCGA-RC-A6M4-01A	FHIT	chr3	60807613	-	TKT	chr3	53276258	-
Frame-shit	ENST00000254322	ENST00000308677		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000350356		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000590853		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000254322	ENST00000589994		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-3CDS	ENST00000396969	ENST00000308677		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000350356		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000590853		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
intron-5UTR	ENST00000396969	ENST00000589994		TCGA	LD	LIHC	TCGA-RC-A6M5-01A	DNAJB1	chr19	14628951	-	PRKACA	chr19	14218221	-
5CDS-5UTR	ENST00000252071	ENST00000223293		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	ACTR3C	chr7	149990401	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000252071	ENST00000474605		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	ACTR3C	chr7	149990401	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000539352	ENST00000223293		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	ACTR3C	chr7	149990401	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000539352	ENST00000474605		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	ACTR3C	chr7	149990401	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000544260	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000398056		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000522444		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000398054		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000381840		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000381841		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000427924		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000518650		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-3CDS	ENST00000445937	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000445937	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000445937	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000445937	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000445937	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000531443	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000531443	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000531443	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000531443	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000531443	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000517566	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000517566	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000517566	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000517566	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000517566	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000452423	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000452423	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000452423	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000452423	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000452423	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000442977	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000442977	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000442977	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000442977	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000442977	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521963	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521963	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000521963	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000521963	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000521963	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000312046	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000312046	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000312046	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000312046	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000312046	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
In-frame	ENST00000449762	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
In-frame	ENST00000449762	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
5CDS-intron	ENST00000449762	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
5CDS-intron	ENST00000449762	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
5CDS-intron	ENST00000449762	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
In-frame	ENST00000297447	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
In-frame	ENST00000297447	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
5CDS-intron	ENST00000297447	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
5CDS-intron	ENST00000297447	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
5CDS-intron	ENST00000297447	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521592	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000521592	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000521592	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000521592	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000521592	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000497705	ENST00000397752		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-3CDS	ENST00000497705	ENST00000318493		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000497705	ENST00000436117		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000497705	ENST00000495962		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-intron	ENST00000497705	ENST00000539704		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	OXR1	chr8	107738537	+	MET	chr7	116411552	+
intron-5UTR	ENST00000240095	ENST00000518533		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000240095	ENST00000359441		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-intron	ENST00000240095	ENST00000521709		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000359741	ENST00000518533		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000359741	ENST00000359441		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-intron	ENST00000359741	ENST00000521709		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000381237	ENST00000518533		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000381237	ENST00000359441		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-intron	ENST00000381237	ENST00000521709		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000289952	ENST00000518533		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-5UTR	ENST00000289952	ENST00000359441		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
intron-intron	ENST00000289952	ENST00000521709		TCGA	LD	LIHC	TCGA-RC-A6M6-01A	SLC39A14	chr8	22252592	+	FGF17	chr8	21900371	+
5UTR-3CDS	ENST00000343455	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
5UTR-3CDS	ENST00000343455	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
5UTR-3UTR	ENST00000343455	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
5UTR-3UTR	ENST00000343455	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000526495	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000526495	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000526495	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000526495	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000393063	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000393063	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000393063	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000393063	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000527416	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000527416	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000527416	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000527416	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000527414	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000527414	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000527414	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000527414	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000556045	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000556045	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000556045	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000556045	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000541352	ENST00000216554		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000541352	ENST00000558506		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000541352	ENST00000560200		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3UTR	ENST00000541352	ENST00000392715		TCGA	LD	LIHC	TCGA-RC-A7SF-01A	DICER1	chr14	95623567	-	EIF5	chr14	103803453	+
intron-3CDS	ENST00000523629	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000396218	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000265814	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000360348	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000436581	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000520724	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000518844	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000522163	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000422361	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
intron-3CDS	ENST00000521553	ENST00000390240		TCGA	LD	LIHC	TCGA-RG-A7D4-01A	RUNX1T1	chr8	93022848	-	IGKJ3	chr2	89160769	-
5CDS-3UTR	ENST00000431231	ENST00000360913		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000431231	ENST00000585580		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
3UTR-3UTR	ENST00000437668	ENST00000360913		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
3UTR-intron	ENST00000437668	ENST00000585580		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
intron-3UTR	ENST00000582409	ENST00000360913		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
intron-intron	ENST00000582409	ENST00000585580		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000443378	ENST00000360913		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000443378	ENST00000585580		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	ARHGAP23	chr17	36656870	+	TSSK6	chr19	19623351	-
5CDS-5UTR	ENST00000247003	ENST00000252575		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	DDX49	chr19	19031512	+	NCAN	chr19	19327756	+
5CDS-intron	ENST00000247003	ENST00000538881		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	DDX49	chr19	19031512	+	NCAN	chr19	19327756	+
5UTR-5UTR	ENST00000438170	ENST00000252575		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	DDX49	chr19	19031512	+	NCAN	chr19	19327756	+
5UTR-intron	ENST00000438170	ENST00000538881		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	DDX49	chr19	19031512	+	NCAN	chr19	19327756	+
intron-5UTR	ENST00000599156	ENST00000252575		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	DDX49	chr19	19031512	+	NCAN	chr19	19327756	+
intron-intron	ENST00000599156	ENST00000538881		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	DDX49	chr19	19031512	+	NCAN	chr19	19327756	+
In-frame	ENST00000337827	ENST00000487861		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000337827	ENST00000471583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000337827	ENST00000487270		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000337827	ENST00000488612		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000337827	ENST00000390683		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000337827	ENST00000469165		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000448469	ENST00000487861		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000448469	ENST00000471583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000448469	ENST00000487270		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000448469	ENST00000488612		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000448469	ENST00000390683		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000448469	ENST00000469165		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000553669	ENST00000487861		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000553669	ENST00000471583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000553669	ENST00000487270		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000553669	ENST00000488612		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
In-frame	ENST00000553669	ENST00000390683		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000553669	ENST00000469165		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000554858	ENST00000487861		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000554858	ENST00000471583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000554858	ENST00000487270		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000554858	ENST00000488612		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000554858	ENST00000390683		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000554858	ENST00000469165		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	GALNT16	chr14	69727184	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000339514	ENST00000261023		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000339514	ENST00000374907		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000339514	ENST00000433736		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-intron	ENST00000339514	ENST00000474571		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000392318	ENST00000261023		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000392318	ENST00000374907		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000392318	ENST00000433736		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-intron	ENST00000392318	ENST00000474571		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000304164	ENST00000261023		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000304164	ENST00000374907		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-3CDS	ENST00000304164	ENST00000433736		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
5UTR-intron	ENST00000304164	ENST00000474571		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000392316	ENST00000261023		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000392316	ENST00000374907		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000392316	ENST00000433736		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-intron	ENST00000392316	ENST00000474571		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000439065	ENST00000261023		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000439065	ENST00000374907		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000439065	ENST00000433736		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-intron	ENST00000439065	ENST00000474571		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000496992	ENST00000261023		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000496992	ENST00000374907		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-3CDS	ENST00000496992	ENST00000433736		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
intron-intron	ENST00000496992	ENST00000474571		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	MYO1B	chr2	192110337	+	ITGAV	chr2	187487066	+
In-frame	ENST00000247001	ENST00000244137		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
In-frame	ENST00000247001	ENST00000397032		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
In-frame	ENST00000247001	ENST00000436370		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
5CDS-intron	ENST00000247001	ENST00000591968		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
5UTR-3CDS	ENST00000585763	ENST00000244137		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
5UTR-3CDS	ENST00000585763	ENST00000397032		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
5UTR-3CDS	ENST00000585763	ENST00000436370		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
5UTR-intron	ENST00000585763	ENST00000591968		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
In-frame	ENST00000334782	ENST00000244137		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
In-frame	ENST00000334782	ENST00000397032		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
In-frame	ENST00000334782	ENST00000436370		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
5CDS-intron	ENST00000334782	ENST00000591968		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	SUGP1	chr19	19427231	-	PEPD	chr19	33904549	-
intron-5UTR	ENST00000343815	ENST00000368827		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000368825		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000368824		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000368823		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000368822		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000458431		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000440583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000343815	ENST00000484421		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000368827		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000368825		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000368824		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000368823		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000368822		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000458431		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000440583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000428931	ENST00000484421		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000368827		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000368825		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000368824		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000368823		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000368822		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000458431		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000440583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5UTR-5UTR	ENST00000271877	ENST00000484421		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000368827		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000368825		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000368824		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000368823		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000368822		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000458431		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000440583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000361546	ENST00000484421		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000368827		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000368825		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000368824		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000368823		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000368822		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000458431		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000440583		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
intron-5UTR	ENST00000484819	ENST00000484421		TCGA	LD	LIHC	TCGA-UB-A7MA-01A	UBAP2L	chr1	154193451	+	TDRKH	chr1	151755525	-
5CDS-intron	ENST00000440884	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
5CDS-intron	ENST00000416682	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
5CDS-intron	ENST00000429436	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
5CDS-intron	ENST00000303622	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
5CDS-intron	ENST00000216288	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
5CDS-intron	ENST00000553942	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
5CDS-intron	ENST00000335102	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
intron-intron	ENST00000561071	ENST00000408206		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	MARK3	chr14	103946827	+	DIO3OS	chr14	102019091	-
intron-3CDS	ENST00000593812	ENST00000455140		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000593812	ENST00000248070		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000593812	ENST00000535753		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000593812	ENST00000594975		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000593812	ENST00000602009		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000593812	ENST00000597937		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000595753	ENST00000455140		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000595753	ENST00000248070		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000595753	ENST00000535753		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000595753	ENST00000594975		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000595753	ENST00000602009		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000595753	ENST00000597937		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000431408	ENST00000455140		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000431408	ENST00000248070		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000431408	ENST00000535753		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000431408	ENST00000594975		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000431408	ENST00000602009		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000431408	ENST00000597937		TCGA	LD	LIHC	TCGA-UB-A7MB-01A	SLC35E1	chr19	16677343	-	EPS15L1	chr19	16528915	-
In-frame	ENST00000463117	ENST00000331872		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
In-frame	ENST00000463117	ENST00000417584		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
In-frame	ENST00000463117	ENST00000311223		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
5CDS-5UTR	ENST00000463117	ENST00000491322		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
5CDS-5UTR	ENST00000463117	ENST00000339526		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
In-frame	ENST00000252945	ENST00000331872		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
In-frame	ENST00000252945	ENST00000417584		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
In-frame	ENST00000252945	ENST00000311223		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
5CDS-5UTR	ENST00000252945	ENST00000491322		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
5CDS-5UTR	ENST00000252945	ENST00000339526		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
intron-3CDS	ENST00000480558	ENST00000331872		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
intron-3CDS	ENST00000480558	ENST00000417584		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
intron-3CDS	ENST00000480558	ENST00000311223		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
intron-5UTR	ENST00000480558	ENST00000491322		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
intron-5UTR	ENST00000480558	ENST00000339526		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	CYP2E1	chr10	135345788	+	GLUL	chr1	182354691	-
intron-intron	ENST00000444837	ENST00000358598		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000444837	ENST00000392711		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000444837	ENST00000589228		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000444837	ENST00000536854		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000444837	ENST00000586397		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000444837	ENST00000588188		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000569500	ENST00000358598		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000569500	ENST00000392711		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000569500	ENST00000589228		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000569500	ENST00000536854		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000569500	ENST00000586397		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000569500	ENST00000588188		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000379811	ENST00000358598		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000379811	ENST00000392711		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000379811	ENST00000589228		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000379811	ENST00000536854		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000379811	ENST00000586397		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000379811	ENST00000588188		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000568675	ENST00000358598		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000568675	ENST00000392711		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000568675	ENST00000589228		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000568675	ENST00000536854		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000568675	ENST00000586397		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
intron-intron	ENST00000568675	ENST00000588188		TCGA	LD	LIHC	TCGA-UB-A7MC-01A	MT1G	chr16	56700864	-	PRKAR1A	chr17	66520258	+
5CDS-intron	ENST00000437198	ENST00000494911		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000437198	ENST00000395900		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000437198	ENST00000459866		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-3UTR	ENST00000437198	ENST00000525436		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000437198	ENST00000478367		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000437198	ENST00000426618		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000437198	ENST00000442957		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000420015	ENST00000494911		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000420015	ENST00000395900		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000420015	ENST00000459866		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-3UTR	ENST00000420015	ENST00000525436		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000420015	ENST00000478367		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000420015	ENST00000426618		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000420015	ENST00000442957		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000341484	ENST00000494911		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000341484	ENST00000395900		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000341484	ENST00000459866		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-3UTR	ENST00000341484	ENST00000525436		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000341484	ENST00000478367		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000341484	ENST00000426618		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000341484	ENST00000442957		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000539279	ENST00000494911		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000539279	ENST00000395900		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000539279	ENST00000459866		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-3UTR	ENST00000539279	ENST00000525436		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000539279	ENST00000478367		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000539279	ENST00000426618		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
5CDS-intron	ENST00000539279	ENST00000442957		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000566021	ENST00000494911		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000566021	ENST00000395900		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000566021	ENST00000459866		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-3UTR	ENST00000566021	ENST00000525436		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000566021	ENST00000478367		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000566021	ENST00000426618		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000566021	ENST00000442957		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	PARN	chr16	14693761	-	WT1-AS	chr11	32473567	+
intron-intron	ENST00000274242	ENST00000337702		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000274242	ENST00000503936		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000509877	ENST00000337702		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000509877	ENST00000503936		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000504562	ENST00000337702		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000504562	ENST00000503936		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000508493	ENST00000337702		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
intron-intron	ENST00000508493	ENST00000503936		TCGA	LD	LIHC	TCGA-UB-A7ME-01A	RPL37	chr5	40832544	-	TTC33	chr5	40513171	-
Frame-shit	ENST00000292577	ENST00000355272		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000292577	ENST00000356926		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000292577	ENST00000350812		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000292577	ENST00000345016		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
5CDS-intron	ENST00000292577	ENST00000590683		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000250974	ENST00000355272		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000250974	ENST00000356926		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000250974	ENST00000350812		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
Frame-shit	ENST00000250974	ENST00000345016		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
5CDS-intron	ENST00000250974	ENST00000590683		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
In-frame	ENST00000590661	ENST00000355272		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
In-frame	ENST00000590661	ENST00000356926		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
In-frame	ENST00000590661	ENST00000350812		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
In-frame	ENST00000590661	ENST00000345016		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
5CDS-intron	ENST00000590661	ENST00000590683		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	ABHD17A	chr19	1881234	-	AP3D1	chr19	2138713	-
5CDS-intron	ENST00000348367	ENST00000490269		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	GPAM	chr10	113931940	-	GUCY2GP	chr10	114098944	-
5CDS-intron	ENST00000423155	ENST00000490269		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	GPAM	chr10	113931940	-	GUCY2GP	chr10	114098944	-
5CDS-intron	ENST00000369425	ENST00000490269		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	GPAM	chr10	113931940	-	GUCY2GP	chr10	114098944	-
intron-intron	ENST00000480130	ENST00000490269		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	GPAM	chr10	113931940	-	GUCY2GP	chr10	114098944	-
Frame-shit	ENST00000371362	ENST00000371348		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371362	ENST00000371344		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371362	ENST00000234831		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371362	ENST00000371341		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-5UTR	ENST00000371362	ENST00000470395		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-intron	ENST00000371362	ENST00000371337		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371360	ENST00000371348		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371360	ENST00000371344		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371360	ENST00000234831		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000371360	ENST00000371341		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-5UTR	ENST00000371360	ENST00000470395		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-intron	ENST00000371360	ENST00000371337		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000545928	ENST00000371348		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000545928	ENST00000371344		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000545928	ENST00000234831		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000545928	ENST00000371341		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-5UTR	ENST00000545928	ENST00000470395		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-intron	ENST00000545928	ENST00000371337		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000420619	ENST00000371348		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000420619	ENST00000371344		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000420619	ENST00000234831		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
Frame-shit	ENST00000420619	ENST00000371341		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-5UTR	ENST00000420619	ENST00000470395		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
5CDS-intron	ENST00000420619	ENST00000371337		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	LDLRAD1	chr1	54475955	-	TMEM59	chr1	54497978	-
intron-3CDS	ENST00000409720	ENST00000273075		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-5UTR	ENST00000409720	ENST00000373972		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-5UTR	ENST00000409720	ENST00000523282		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-intron	ENST00000409720	ENST00000490371		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-3CDS	ENST00000356853	ENST00000273075		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-5UTR	ENST00000356853	ENST00000373972		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-5UTR	ENST00000356853	ENST00000523282		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-intron	ENST00000356853	ENST00000490371		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
5UTR-3CDS	ENST00000483627	ENST00000273075		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
5UTR-5UTR	ENST00000483627	ENST00000373972		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
5UTR-5UTR	ENST00000483627	ENST00000523282		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
5UTR-intron	ENST00000483627	ENST00000490371		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	NHEJ1	chr2	219990193	-	DNPEP	chr2	220251885	-
intron-3UTR	ENST00000320201	ENST00000420886		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000320201	ENST00000267176		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000320201	ENST00000602750		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000320201	ENST00000602398		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000392428	ENST00000420886		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000392428	ENST00000267176		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000392428	ENST00000602750		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000392428	ENST00000602398		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000280562	ENST00000420886		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000280562	ENST00000267176		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000280562	ENST00000602750		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000280562	ENST00000602398		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000542749	ENST00000420886		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000542749	ENST00000267176		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000542749	ENST00000602750		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000542749	ENST00000602398		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000546049	ENST00000420886		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000546049	ENST00000267176		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000546049	ENST00000602750		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000546049	ENST00000602398		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000451868	ENST00000420886		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-3UTR	ENST00000451868	ENST00000267176		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000451868	ENST00000602750		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
intron-intron	ENST00000451868	ENST00000602398		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	PITPNM2	chr12	123468545	-	SBNO1	chr12	123777114	-
5CDS-intron	ENST00000420415	ENST00000431635		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000420415	ENST00000236051		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000420415	ENST00000472982		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000360110	ENST00000431635		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000360110	ENST00000236051		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000360110	ENST00000472982		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
3UTR-intron	ENST00000540528	ENST00000431635		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
3UTR-intron	ENST00000540528	ENST00000236051		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
3UTR-intron	ENST00000540528	ENST00000472982		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000392396	ENST00000431635		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000392396	ENST00000236051		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000392396	ENST00000472982		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000535031	ENST00000431635		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000535031	ENST00000236051		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000535031	ENST00000472982		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000465288	ENST00000431635		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000465288	ENST00000236051		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5UTR-intron	ENST00000465288	ENST00000472982		TCGA	LD	LIHC	TCGA-WJ-A86L-01A	TFRC	chr3	195787051	-	EBNA1BP2	chr1	43727589	-
5UTR-3CDS	ENST00000545172	ENST00000367846		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000545172	ENST00000271373		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000367851	ENST00000367846		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000367851	ENST00000271373		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000367848	ENST00000367846		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000367848	ENST00000271373		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000476818	ENST00000367846		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
5UTR-3CDS	ENST00000476818	ENST00000271373		TCGA	LD	LIHC	TCGA-WX-AA47-01A	ADCY10	chr1	167883214	-	MPC2	chr1	167889869	-
In-frame	ENST00000265846	ENST00000262432		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
In-frame	ENST00000265846	ENST00000480046		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
5CDS-intron	ENST00000265846	ENST00000473488		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000449296	ENST00000262432		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000449296	ENST00000480046		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-intron	ENST00000449296	ENST00000473488		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000539900	ENST00000262432		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000539900	ENST00000480046		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-intron	ENST00000539900	ENST00000473488		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000463358	ENST00000262432		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000463358	ENST00000480046		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-intron	ENST00000463358	ENST00000473488		TCGA	LD	LIHC	TCGA-XR-A8TD-01A	ADAP1	chr7	994032	-	METTL2B	chr7	128141816	+
intron-3CDS	ENST00000589651	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	BCAM	chr19	45324304	+	REG3A	chr2	79385877	-
intron-3CDS	ENST00000589651	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	BCAM	chr19	45324304	+	REG3A	chr2	79385877	-
intron-3CDS	ENST00000589651	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	BCAM	chr19	45324304	+	REG3A	chr2	79385877	-
3UTR-3CDS	ENST00000270233	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	BCAM	chr19	45324304	+	REG3A	chr2	79385877	-
3UTR-3CDS	ENST00000270233	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	BCAM	chr19	45324304	+	REG3A	chr2	79385877	-
3UTR-3CDS	ENST00000270233	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	BCAM	chr19	45324304	+	REG3A	chr2	79385877	-
intron-3UTR	ENST00000381395	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381395	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381395	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381406	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381406	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381406	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000416167	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000416167	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000416167	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000300632	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000300632	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000300632	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000434045	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000434045	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000434045	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381392	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381392	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381392	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381389	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381389	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000381389	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000418738	ENST00000409839		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000418738	ENST00000393878		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
intron-3UTR	ENST00000418738	ENST00000305165		TCGA	LD	LIHC	TCGA-XR-A8TE-01A	IGF2	chr11	2159991	-	REG3A	chr2	79384245	-
5CDS-intron	ENST00000306010	ENST00000516624		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517111		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516429		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517180		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516953		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516327		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517204		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516019		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516528		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516190		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000515993		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517219		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517043		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516771		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517232		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516773		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516482		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516241		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516728		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517079		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516029		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517242		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000362607		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000517250		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-3UTR	ENST00000306010	ENST00000516049		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516540		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
5CDS-intron	ENST00000306010	ENST00000516287		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516624		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517111		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516429		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517180		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516953		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516327		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517204		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516019		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516528		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516190		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000515993		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517219		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517043		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516771		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517232		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516773		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516482		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516241		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516728		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517079		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516029		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517242		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000362607		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000517250		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-3UTR	ENST00000462672	ENST00000516049		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516540		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-intron	ENST00000462672	ENST00000516287		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	MGMT	chr10	131265560	+	SNORA31	chr14	42063681	+
intron-3CDS	ENST00000406581	ENST00000403799		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000406581	ENST00000395796		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000406581	ENST00000345378		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000406581	ENST00000437084		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-5UTR	ENST00000406581	ENST00000476008		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000223361	ENST00000403799		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000223361	ENST00000395796		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000223361	ENST00000345378		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000223361	ENST00000437084		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-5UTR	ENST00000223361	ENST00000476008		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000452185	ENST00000403799		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000452185	ENST00000395796		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000452185	ENST00000345378		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000452185	ENST00000437084		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
5UTR-5UTR	ENST00000452185	ENST00000476008		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000481763	ENST00000403799		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000481763	ENST00000395796		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000481763	ENST00000345378		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000481763	ENST00000437084		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
intron-5UTR	ENST00000481763	ENST00000476008		TCGA	LD	LIHC	TCGA-XR-A8TF-01A	POLD2	chr7	44163110	-	GCK	chr7	44193062	-
In-frame	ENST00000589651	ENST00000402988		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	BCAM	chr19	45318017	+	IGSF23	chr19	45130717	+
In-frame	ENST00000270233	ENST00000402988		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	BCAM	chr19	45318017	+	IGSF23	chr19	45130717	+
Frame-shit	ENST00000421837	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000421837	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000421837	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000421837	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000354829	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000354829	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000354829	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000354829	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5UTR-3CDS	ENST00000342499	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5UTR-3CDS	ENST00000342499	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5UTR-3CDS	ENST00000342499	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5UTR-intron	ENST00000342499	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000417625	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000417625	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000417625	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000417625	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000415413	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000415413	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000415413	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000415413	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
3UTR-3CDS	ENST00000477658	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
3UTR-3CDS	ENST00000477658	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
3UTR-3CDS	ENST00000477658	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
3UTR-intron	ENST00000477658	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000444905	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000444905	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000444905	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000444905	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000312017	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000312017	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000312017	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000312017	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000222382	ENST00000394152		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000222382	ENST00000334715		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
Frame-shit	ENST00000222382	ENST00000262941		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
5CDS-intron	ENST00000222382	ENST00000466948		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	CYP3A43	chr7	99425809	+	ZSCAN25	chr7	99226993	+
intron-3CDS	ENST00000341217	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000341217	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000341217	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000581407	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000581407	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000581407	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000582266	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000582266	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000582266	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000452648	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000452648	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000452648	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000582059	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000582059	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000582059	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000583953	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000583953	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000583953	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000577682	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-3CDS	ENST00000577682	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
intron-intron	ENST00000577682	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-3CDS	ENST00000583522	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-3CDS	ENST00000583522	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-intron	ENST00000583522	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-3CDS	ENST00000581381	ENST00000361035		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-3CDS	ENST00000581381	ENST00000325945		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-intron	ENST00000581381	ENST00000482991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM222B	chr17	27117396	-	HAO2	chr1	119934733	+
5UTR-3CDS	ENST00000298784	ENST00000361175		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-3CDS	ENST00000298784	ENST00000456849		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-3CDS	ENST00000298784	ENST00000427144		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-intron	ENST00000298784	ENST00000482258		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-3CDS	ENST00000298786	ENST00000361175		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-3CDS	ENST00000298786	ENST00000456849		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-3CDS	ENST00000298786	ENST00000427144		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
5UTR-intron	ENST00000298786	ENST00000482258		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	FAM35A	chr10	88856746	+	PAPSS2	chr10	89500992	+
Frame-shit	ENST00000297185	ENST00000302243		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5CDS-intron	ENST00000297185	ENST00000562509		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5CDS-intron	ENST00000297185	ENST00000417604		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5CDS-intron	ENST00000297185	ENST00000443119		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5UTR-3CDS	ENST00000501917	ENST00000302243		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5UTR-intron	ENST00000501917	ENST00000562509		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5UTR-intron	ENST00000501917	ENST00000417604		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
5UTR-intron	ENST00000501917	ENST00000443119		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HSPA9	chr5	137902315	-	DDX19A	chr16	70405275	+
In-frame	ENST00000368984	ENST00000528446		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	HTRA1	chr10	124221640	+	ARMS2	chr10	124216423	+
intron-3CDS	ENST00000465878	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000465878	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000465878	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000465878	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000379655	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000379655	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000379655	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000379655	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000445690	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000445690	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000445690	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000445690	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000421376	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000421376	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000421376	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000421376	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000541240	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000541240	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000541240	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000541240	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000540079	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000540079	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000540079	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000540079	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000543930	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000543930	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000543930	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000543930	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000562903	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000562903	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000562903	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000562903	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000539578	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000539578	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000539578	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000539578	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000566975	ENST00000564448		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-3CDS	ENST00000566975	ENST00000251102		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-5UTR	ENST00000566975	ENST00000564654		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
intron-intron	ENST00000566975	ENST00000311183		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	KIFC3	chr16	57896633	-	CNGB1	chr16	57974225	-
3UTR-3CDS	ENST00000597933	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
3UTR-3CDS	ENST00000597933	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
3UTR-5UTR	ENST00000597933	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
3UTR-5UTR	ENST00000597933	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
3UTR-5UTR	ENST00000597933	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
3UTR-3UTR	ENST00000597933	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000602122	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000602122	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000602122	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000602122	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000602122	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-3UTR	ENST00000602122	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000361790	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000361790	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000361790	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000361790	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000361790	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-3UTR	ENST00000361790	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000360798	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000360798	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000360798	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000360798	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000360798	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-3UTR	ENST00000360798	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000354900	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000354900	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000354900	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000354900	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000354900	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-3UTR	ENST00000354900	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000347609	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000347609	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000347609	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000347609	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000347609	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
5CDS-3UTR	ENST00000347609	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000427250	ENST00000599564		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000427250	ENST00000317991		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000427250	ENST00000504615		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000427250	ENST00000411896		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000427250	ENST00000424536		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
intron-3UTR	ENST00000427250	ENST00000598073		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	LSR	chr19	35753595	+	GRAMD1A	chr19	35500023	+
Frame-shit	ENST00000356175	ENST00000325874		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
Frame-shit	ENST00000358273	ENST00000325874		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000431387	ENST00000325874		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000581280		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000394744		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29844669	+
5UTR-3CDS	ENST00000531894	ENST00000592765		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PDXDC2P	chr16	70016253	-	WDR88	chr19	33628583	+
5UTR-3CDS	ENST00000531894	ENST00000361680		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PDXDC2P	chr16	70016253	-	WDR88	chr19	33628583	+
5UTR-3CDS	ENST00000531894	ENST00000355868		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PDXDC2P	chr16	70016253	-	WDR88	chr19	33628583	+
intron-3CDS	ENST00000525173	ENST00000592765		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PDXDC2P	chr16	70016253	-	WDR88	chr19	33628583	+
intron-3CDS	ENST00000525173	ENST00000361680		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PDXDC2P	chr16	70016253	-	WDR88	chr19	33628583	+
intron-3CDS	ENST00000525173	ENST00000355868		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PDXDC2P	chr16	70016253	-	WDR88	chr19	33628583	+
intron-3CDS	ENST00000345136	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000357649	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000354589	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000398774	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000322810	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000354958	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
In-frame	ENST00000356346	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000436759	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
intron-3CDS	ENST00000527096	ENST00000216540		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	PLEC	chr8	145047571	-	SLC10A1	chr14	70246077	-
In-frame	ENST00000314251	ENST00000295822		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
5CDS-5UTR	ENST00000314251	ENST00000460117		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
5CDS-intron	ENST00000314251	ENST00000487522		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
5CDS-intron	ENST00000314251	ENST00000474096		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
Frame-shit	ENST00000382808	ENST00000295822		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
5CDS-5UTR	ENST00000382808	ENST00000460117		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
5CDS-intron	ENST00000382808	ENST00000487522		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
5CDS-intron	ENST00000382808	ENST00000474096		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SLC2A2	chr3	170720365	-	EIF5A2	chr3	170612212	-
intron-intron	ENST00000409718	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
intron-intron	ENST00000358677	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
5UTR-intron	ENST00000409988	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
intron-intron	ENST00000409385	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
5UTR-intron	ENST00000451764	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
5UTR-intron	ENST00000360760	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
intron-intron	ENST00000409140	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
intron-intron	ENST00000409755	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
intron-intron	ENST00000409151	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
intron-intron	ENST00000460095	ENST00000469595		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SPATS2L	chr2	201171324	+	AOX3P	chr2	201556595	+
Frame-shit	ENST00000367121	ENST00000607778		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SYNJ2	chr6	158492826	+	GTF2H5	chr6	158613009	+
Frame-shit	ENST00000367122	ENST00000607778		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SYNJ2	chr6	158492826	+	GTF2H5	chr6	158613009	+
Frame-shit	ENST00000355585	ENST00000607778		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SYNJ2	chr6	158492826	+	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000449859	ENST00000607778		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SYNJ2	chr6	158492826	+	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000367112	ENST00000607778		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	SYNJ2	chr6	158492826	+	GTF2H5	chr6	158613009	+
5UTR-3CDS	ENST00000261716	ENST00000422514		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-5UTR	ENST00000261716	ENST00000496182		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-5UTR	ENST00000261716	ENST00000394938		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-5UTR	ENST00000261716	ENST00000472628		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-3CDS	ENST00000536202	ENST00000422514		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-5UTR	ENST00000536202	ENST00000496182		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-5UTR	ENST00000536202	ENST00000394938		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5UTR-5UTR	ENST00000536202	ENST00000472628		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TAOK1	chr17	27718042	+	RPL23A	chr17	27047725	+
5CDS-3UTR	ENST00000353024	ENST00000461862		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000353024	ENST00000368905		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000392712	ENST00000461862		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000392712	ENST00000368905		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000368849	ENST00000461862		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000368849	ENST00000368905		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000368848	ENST00000461862		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5CDS-3UTR	ENST00000368848	ENST00000368905		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5UTR-3UTR	ENST00000538902	ENST00000461862		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
5UTR-3UTR	ENST00000538902	ENST00000368905		TCGA	LD	LIHC	TCGA-XR-A8TG-01A	TUFT1	chr1	151512902	+	SCNM1	chr1	151138947	+
In-frame	ENST00000318911	ENST00000302053		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	CYC1	chr8	145151153	+	FGA	chr4	155508070	-
Frame-shit	ENST00000318911	ENST00000403106		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	CYC1	chr8	145151153	+	FGA	chr4	155508070	-
Frame-shit	ENST00000302053	ENST00000430249		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
Frame-shit	ENST00000302053	ENST00000233072		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
Frame-shit	ENST00000302053	ENST00000451903		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
5CDS-intron	ENST00000302053	ENST00000497121		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
intron-3CDS	ENST00000403106	ENST00000430249		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
intron-3CDS	ENST00000403106	ENST00000233072		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
intron-3CDS	ENST00000403106	ENST00000451903		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
intron-intron	ENST00000403106	ENST00000497121		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	FGA	chr4	155506690	-	CPS1	chr2	211542611	+
3UTR-5UTR	ENST00000367203	ENST00000274710		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	SOX13	chr1	204042839	+	PSD2	chr5	139188976	+
5UTR-5UTR	ENST00000367204	ENST00000274710		TCGA	LD	LIHC	TCGA-ZP-A9D0-01A	SOX13	chr1	204042839	+	PSD2	chr5	139188976	+
intron-3CDS	ENST00000431468	ENST00000367698		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
intron-intron	ENST00000431468	ENST00000494024		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
intron-3CDS	ENST00000438614	ENST00000367698		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
intron-intron	ENST00000438614	ENST00000494024		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
5UTR-3CDS	ENST00000536498	ENST00000367698		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
5UTR-intron	ENST00000536498	ENST00000494024		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
In-frame	ENST00000226218	ENST00000367698		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
5CDS-intron	ENST00000226218	ENST00000494024		TCGA	LD	LIHC	TCGA-ZS-A9CE-01A	VTN	chr17	26696310	-	SERPINC1	chr1	173879080	-
5CDS-5UTR	ENST00000297785	ENST00000351325		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000589209		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000455515		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000588715		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000588607		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000297785	ENST00000588081		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000351325		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000589209		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000455515		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000588715		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000588607		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000376939	ENST00000588081		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000351325		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000589209		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000455515		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000588715		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000588607		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000482210	ENST00000588081		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	ALDH1A1	chr9	75538935	-	FXYD1	chr19	35630980	+
Frame-shit	ENST00000358607	ENST00000307092		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000358607	ENST00000307076		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000358607	ENST00000422318		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000358607	ENST00000459839		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
5CDS-5UTR	ENST00000358607	ENST00000490681		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000450195	ENST00000307092		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000450195	ENST00000307076		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000450195	ENST00000422318		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000450195	ENST00000459839		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
5CDS-5UTR	ENST00000450195	ENST00000490681		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	C19orf60	chr19	18699710	+	NT5DC2	chr3	52563350	-
Frame-shit	ENST00000601953	ENST00000378626		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CAPN12	chr19	39232417	-	LGALS7	chr19	39263743	-
Frame-shit	ENST00000328867	ENST00000378626		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CAPN12	chr19	39232417	-	LGALS7	chr19	39263743	-
5UTR-3CDS	ENST00000548567	ENST00000264057		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-3CDS	ENST00000548567	ENST00000409813		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-intron	ENST00000548567	ENST00000489613		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
In-frame	ENST00000351328	ENST00000264057		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
In-frame	ENST00000351328	ENST00000409813		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5CDS-intron	ENST00000351328	ENST00000489613		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-3CDS	ENST00000542324	ENST00000264057		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-3CDS	ENST00000542324	ENST00000409813		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-intron	ENST00000542324	ENST00000489613		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	CS	chr12	56693944	-	DGKD	chr2	234343026	+
5UTR-5UTR	ENST00000397493	ENST00000529704		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000397493	ENST00000312419		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000397493	ENST00000539074		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000327423	ENST00000529704		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000327423	ENST00000312419		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000327423	ENST00000539074		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000434485	ENST00000529704		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000434485	ENST00000312419		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000434485	ENST00000539074		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000461722	ENST00000529704		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000461722	ENST00000312419		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
5UTR-5UTR	ENST00000461722	ENST00000539074		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	PRR14L	chr22	32145979	-	POLD4	chr11	67120548	-
In-frame	ENST00000375114	ENST00000332629		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000375114	ENST00000429115		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000375114	ENST00000433160		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
In-frame	ENST00000246194	ENST00000332629		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000246194	ENST00000429115		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000246194	ENST00000433160		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
3UTR-3CDS	ENST00000493399	ENST00000332629		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
3UTR-5UTR	ENST00000493399	ENST00000429115		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
3UTR-5UTR	ENST00000493399	ENST00000433160		TCGA	LD	LIHC	TCGA-ZS-A9CF-01A	RALY	chr20	32660011	+	WDR53	chr3	196281678	-
In-frame	ENST00000394906	ENST00000487861		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394906	ENST00000471583		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394906	ENST00000487270		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394906	ENST00000488612		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394906	ENST00000390683		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394906	ENST00000469165		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
In-frame	ENST00000394908	ENST00000487861		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394908	ENST00000471583		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394908	ENST00000487270		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394908	ENST00000488612		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394908	ENST00000390683		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000394908	ENST00000469165		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
In-frame	ENST00000585169	ENST00000487861		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000585169	ENST00000471583		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000585169	ENST00000487270		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000585169	ENST00000488612		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000585169	ENST00000390683		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5CDS-intron	ENST00000585169	ENST00000469165		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5UTR-3CDS	ENST00000577789	ENST00000487861		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5UTR-intron	ENST00000577789	ENST00000471583		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5UTR-intron	ENST00000577789	ENST00000487270		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5UTR-intron	ENST00000577789	ENST00000488612		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5UTR-intron	ENST00000577789	ENST00000390683		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
5UTR-intron	ENST00000577789	ENST00000469165		TCGA	LD	LIHC	TCGA-ZS-A9CG-01A	FLOT2	chr17	27224544	-	RAD51B	chr14	69077723	+
In-frame	ENST00000353139	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
In-frame	ENST00000353139	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000353139	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000353139	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000353139	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000353139	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
In-frame	ENST00000360679	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
In-frame	ENST00000360679	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000360679	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000360679	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000360679	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000360679	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
Frame-shit	ENST00000394406	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
Frame-shit	ENST00000394406	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000394406	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000394406	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000394406	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000394406	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
Frame-shit	ENST00000335166	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
Frame-shit	ENST00000335166	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000335166	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000335166	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000335166	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
5CDS-intron	ENST00000335166	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000416895	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000416895	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000416895	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000416895	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000416895	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000416895	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000361253	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000361253	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000361253	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000361253	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000361253	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000361253	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000588142	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000588142	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000588142	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000588142	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000588142	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000588142	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000589665	ENST00000269033		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-3CDS	ENST00000589665	ENST00000540801		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000589665	ENST00000324677		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000589665	ENST00000582084		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000589665	ENST00000590153		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
intron-intron	ENST00000589665	ENST00000579954		TCGA	RV	LUAD	TCGA-44-2656-01A	ACACA	chr17	35631084	-	SSH2	chr17	27982625	-
Frame-shit	ENST00000317447	ENST00000262873		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
5CDS-intron	ENST00000317447	ENST00000481922		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
Frame-shit	ENST00000406948	ENST00000262873		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
5CDS-intron	ENST00000406948	ENST00000481922		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
Frame-shit	ENST00000378345	ENST00000262873		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
5CDS-intron	ENST00000378345	ENST00000481922		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
3UTR-3CDS	ENST00000537116	ENST00000262873		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
3UTR-intron	ENST00000537116	ENST00000481922		TCGA	RV	LUAD	TCGA-67-6215-01A	ACSF3	chr16	89212457	+	MYH7B	chr20	33578541	+
intron-intron	ENST00000464611	ENST00000589876		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-5UTR	ENST00000464611	ENST00000245925		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000464611	ENST00000536630		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000464611	ENST00000587152		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000464611	ENST00000586902		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000331789	ENST00000589876		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-5UTR	ENST00000331789	ENST00000245925		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000331789	ENST00000536630		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000331789	ENST00000587152		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
intron-intron	ENST00000331789	ENST00000586902		TCGA	RV	LUAD	TCGA-49-6761-01A	ACTB	chr7	5567034	-	EML2	chr19	46142669	-
5CDS-5UTR	ENST00000347580	ENST00000393223		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000347580	ENST00000346299		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000347580	ENST00000409459		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000347580	ENST00000352297		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000347580	ENST00000484818		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000379853	ENST00000393223		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000379853	ENST00000346299		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000379853	ENST00000409459		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000379853	ENST00000352297		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000379853	ENST00000484818		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000265708	ENST00000393223		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000265708	ENST00000346299		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000265708	ENST00000409459		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000265708	ENST00000352297		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000265708	ENST00000484818		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000521880	ENST00000393223		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000521880	ENST00000346299		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000521880	ENST00000409459		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000521880	ENST00000352297		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000521880	ENST00000484818		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
intron-5UTR	ENST00000523181	ENST00000393223		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
intron-5UTR	ENST00000523181	ENST00000346299		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
intron-5UTR	ENST00000523181	ENST00000409459		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
intron-5UTR	ENST00000523181	ENST00000352297		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
intron-5UTR	ENST00000523181	ENST00000484818		TCGA	RV	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95598840	-
Frame-shit	ENST00000281471	ENST00000536681		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000281471	ENST00000549080		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000281471	ENST00000182377		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000281471	ENST00000547116		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
In-frame	ENST00000537562	ENST00000536681		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000537562	ENST00000549080		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000537562	ENST00000182377		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000537562	ENST00000547116		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
Frame-shit	ENST00000541931	ENST00000536681		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000541931	ENST00000549080		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000541931	ENST00000182377		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000541931	ENST00000547116		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
Frame-shit	ENST00000536761	ENST00000536681		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000536761	ENST00000549080		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000536761	ENST00000182377		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000536761	ENST00000547116		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
Frame-shit	ENST00000542781	ENST00000536681		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000542781	ENST00000549080		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000542781	ENST00000182377		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5CDS-intron	ENST00000542781	ENST00000547116		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
intron-3CDS	ENST00000541541	ENST00000536681		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
intron-intron	ENST00000541541	ENST00000549080		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
intron-intron	ENST00000541541	ENST00000182377		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
intron-intron	ENST00000541541	ENST00000547116		TCGA	RV	LUAD	TCGA-80-5611-01A	AMN1	chr12	31841941	-	FAR2	chr12	29460591	+
5UTR-3CDS	ENST00000378330	ENST00000389301		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000378330	ENST00000568369		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000567284		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000389302		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000563673		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000534992		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000378330	ENST00000543736		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000301030	ENST00000389301		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-3CDS	ENST00000301030	ENST00000568369		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000567284		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000389302		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000563673		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000534992		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
5UTR-intron	ENST00000301030	ENST00000543736		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000563291	ENST00000389301		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000563291	ENST00000568369		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000567284		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000389302		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000563673		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000534992		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000563291	ENST00000543736		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000567736	ENST00000389301		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-3CDS	ENST00000567736	ENST00000568369		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000567284		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000389302		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000563673		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000534992		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
intron-intron	ENST00000567736	ENST00000543736		TCGA	RV	LUAD	TCGA-97-8176-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89818630	-
Frame-shit	ENST00000349938	ENST00000402714		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
Frame-shit	ENST00000349938	ENST00000544450		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
Frame-shit	ENST00000349938	ENST00000392920		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
5CDS-3UTR	ENST00000349938	ENST00000555048		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
3UTR-3CDS	ENST00000483477	ENST00000402714		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
3UTR-3CDS	ENST00000483477	ENST00000544450		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
3UTR-3CDS	ENST00000483477	ENST00000392920		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
3UTR-3UTR	ENST00000483477	ENST00000555048		TCGA	RV	LUAD	TCGA-67-3771-01A	ARMC9	chr2	232160966	+	EVL	chr14	100551024	+
Frame-shit	ENST00000369880	ENST00000369983		TCGA	RV	LUAD	TCGA-91-8499-01A	AS3MT	chr10	104650435	+	GBF1	chr10	104103808	+
5CDS-intron	ENST00000369880	ENST00000476019		TCGA	RV	LUAD	TCGA-91-8499-01A	AS3MT	chr10	104650435	+	GBF1	chr10	104103808	+
Frame-shit	ENST00000357668	ENST00000360375		TCGA	RV	LUAD	TCGA-78-7153-01A	ASAP1	chr8	131249168	-	LRRCC1	chr8	86057624	+
Frame-shit	ENST00000357668	ENST00000414626		TCGA	RV	LUAD	TCGA-78-7153-01A	ASAP1	chr8	131249168	-	LRRCC1	chr8	86057624	+
In-frame	ENST00000518721	ENST00000360375		TCGA	RV	LUAD	TCGA-78-7153-01A	ASAP1	chr8	131249168	-	LRRCC1	chr8	86057624	+
In-frame	ENST00000518721	ENST00000414626		TCGA	RV	LUAD	TCGA-78-7153-01A	ASAP1	chr8	131249168	-	LRRCC1	chr8	86057624	+
intron-3CDS	ENST00000520625	ENST00000360375		TCGA	RV	LUAD	TCGA-78-7153-01A	ASAP1	chr8	131249168	-	LRRCC1	chr8	86057624	+
intron-3CDS	ENST00000520625	ENST00000414626		TCGA	RV	LUAD	TCGA-78-7153-01A	ASAP1	chr8	131249168	-	LRRCC1	chr8	86057624	+
5CDS-intron	ENST00000321990	ENST00000534836		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
5CDS-intron	ENST00000321990	ENST00000541045		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
5CDS-intron	ENST00000321990	ENST00000536908		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
5CDS-intron	ENST00000321990	ENST00000378738		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
5CDS-intron	ENST00000321990	ENST00000394832		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
5CDS-intron	ENST00000321990	ENST00000320856		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
5CDS-intron	ENST00000321990	ENST00000394835		TCGA	RV	LUAD	TCGA-35-5375-01A	ATAD5	chr17	29164332	+	EFCAB5	chr17	28409909	+
Frame-shit	ENST00000242067	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000242067	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000242067	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000242067	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
Frame-shit	ENST00000355070	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000355070	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000355070	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000355070	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
Frame-shit	ENST00000350941	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000350941	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000350941	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000350941	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
Frame-shit	ENST00000354265	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000354265	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000354265	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000354265	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
Frame-shit	ENST00000396127	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000396127	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000396127	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000396127	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
Frame-shit	ENST00000425508	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000425508	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000425508	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
5CDS-intron	ENST00000425508	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
intron-3CDS	ENST00000482941	ENST00000404479		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
intron-intron	ENST00000482941	ENST00000318709		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
intron-intron	ENST00000482941	ENST00000459629		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
intron-intron	ENST00000482941	ENST00000409301		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	BBS9	chr7	33217203	+	AVL9	chr7	33078454	+
In-frame	ENST00000370830	ENST00000244728		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
In-frame	ENST00000370830	ENST00000370819		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
In-frame	ENST00000370830	ENST00000535941		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
5CDS-intron	ENST00000370830	ENST00000370808		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
5CDS-intron	ENST00000370830	ENST00000467045		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
In-frame	ENST00000446683	ENST00000244728		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
In-frame	ENST00000446683	ENST00000370819		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
In-frame	ENST00000446683	ENST00000535941		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
5CDS-intron	ENST00000446683	ENST00000370808		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
5CDS-intron	ENST00000446683	ENST00000467045		TCGA	RV	LUAD	TCGA-49-4488-01A	BMP5	chr6	55739174	-	COL21A1	chr6	55966323	-
5CDS-5UTR	ENST00000216267	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000216267	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000216267	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000216267	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000216267	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000216267	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000216267	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404034	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404034	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404034	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404034	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000404034	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404034	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000404034	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404760	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404760	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404760	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404760	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000404760	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000404760	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000404760	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000457780	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000457780	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000457780	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000457780	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000457780	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000457780	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000457780	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000542442	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000542442	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000542442	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000542442	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000542442	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000542442	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000542442	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000342989	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000342989	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000342989	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000342989	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000342989	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-5UTR	ENST00000342989	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
5CDS-intron	ENST00000342989	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-5UTR	ENST00000459821	ENST00000395876		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-5UTR	ENST00000459821	ENST00000311597		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-5UTR	ENST00000459821	ENST00000538737		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-5UTR	ENST00000459821	ENST00000431262		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-intron	ENST00000459821	ENST00000535444		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-5UTR	ENST00000459821	ENST00000450140		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
intron-intron	ENST00000459821	ENST00000483836		TCGA	RV	LUAD	TCGA-44-7660-01A	BRD1	chr22	50187682	-	MLC1	chr22	50523390	-
In-frame	ENST00000357641	ENST00000287218		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000357641	ENST00000373391		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
5CDS-intron	ENST00000357641	ENST00000463847		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000339717	ENST00000287218		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000339717	ENST00000373391		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
5CDS-intron	ENST00000339717	ENST00000463847		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
intron-3CDS	ENST00000534694	ENST00000287218		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
intron-3CDS	ENST00000534694	ENST00000373391		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
intron-intron	ENST00000534694	ENST00000463847		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000543502	ENST00000287218		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000543502	ENST00000373391		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
5CDS-intron	ENST00000543502	ENST00000463847		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
intron-3CDS	ENST00000443324	ENST00000287218		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
intron-3CDS	ENST00000443324	ENST00000373391		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
intron-intron	ENST00000443324	ENST00000463847		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000534400	ENST00000287218		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
In-frame	ENST00000534400	ENST00000373391		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
5CDS-intron	ENST00000534400	ENST00000463847		TCGA	RV	LUAD	TCGA-05-4418-01A	BRPF3	chr6	36185787	+	ZFAND3	chr6	37897735	+
Frame-shit	ENST00000448841	ENST00000369902		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000448841	ENST00000369899		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000448841	ENST00000423559		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
5CDS-3UTR	ENST00000448841	ENST00000471000		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000369889	ENST00000369902		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000369889	ENST00000369899		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000369889	ENST00000423559		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
intron-3UTR	ENST00000369889	ENST00000471000		TCGA	RV	LUAD	TCGA-55-7576-01A	WBP1L	chr10	104503900	+	SUFU	chr10	104352339	+
5CDS-5UTR	ENST00000374642	ENST00000377795		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000374642	ENST00000353334		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000374642	ENST00000524315		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000374642	ENST00000009530		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000402322	ENST00000377795		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000402322	ENST00000353334		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000402322	ENST00000524315		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000402322	ENST00000009530		TCGA	RV	LUAD	TCGA-91-6835-01A	C1QA	chr1	22965442	+	CD74	chr5	149792314	-
5CDS-5UTR	ENST00000334126	ENST00000533760		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5CDS-3UTR	ENST00000334126	ENST00000397957		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5CDS-3UTR	ENST00000334126	ENST00000316851		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5CDS-3UTR	ENST00000334126	ENST00000401611		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-5UTR	ENST00000313663	ENST00000533760		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-3UTR	ENST00000313663	ENST00000397957		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-3UTR	ENST00000313663	ENST00000316851		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-3UTR	ENST00000313663	ENST00000401611		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5UTR-5UTR	ENST00000542452	ENST00000533760		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5UTR-3UTR	ENST00000542452	ENST00000397957		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5UTR-3UTR	ENST00000542452	ENST00000316851		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
5UTR-3UTR	ENST00000542452	ENST00000401611		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-5UTR	ENST00000539061	ENST00000533760		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-3UTR	ENST00000539061	ENST00000397957		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-3UTR	ENST00000539061	ENST00000316851		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
intron-3UTR	ENST00000539061	ENST00000401611		TCGA	RV	LUAD	TCGA-67-3774-01A	C2CD3	chr11	73739332	-	NCAM1	chr11	113073101	+
In-frame	ENST00000394303	ENST00000377755		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
In-frame	ENST00000394303	ENST00000398486		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
In-frame	ENST00000394310	ENST00000377755		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
In-frame	ENST00000394310	ENST00000398486		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
In-frame	ENST00000344140	ENST00000377755		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
In-frame	ENST00000344140	ENST00000398486		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
intron-3CDS	ENST00000582877	ENST00000377755		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
intron-3CDS	ENST00000582877	ENST00000398486		TCGA	RV	LUAD	TCGA-97-8175-01A	CACNB1	chr17	37353665	-	KRT40	chr17	39137403	-
intron-3CDS	ENST00000531028	ENST00000349459		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
intron-3CDS	ENST00000531028	ENST00000320740		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
intron-3CDS	ENST00000531028	ENST00000524466		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
intron-intron	ENST00000531028	ENST00000531856		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000278559	ENST00000349459		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000278559	ENST00000320740		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000278559	ENST00000524466		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
5CDS-intron	ENST00000278559	ENST00000531856		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000529629	ENST00000349459		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000529629	ENST00000320740		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000529629	ENST00000524466		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
5CDS-intron	ENST00000529629	ENST00000531856		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000456580	ENST00000349459		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000456580	ENST00000320740		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
In-frame	ENST00000456580	ENST00000524466		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
5CDS-intron	ENST00000456580	ENST00000531856		TCGA	RV	LUAD	TCGA-55-A492-01A	CAPN5	chr11	76804859	+	PELI3	chr11	66239840	+
Frame-shit	ENST00000392259	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000392259	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000392259	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000392259	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000392266	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000392266	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000392266	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000392266	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000264274	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000264274	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000264274	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000264274	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000432109	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000432109	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000432109	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000432109	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000264275	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000264275	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000264275	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000264275	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000392258	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000392258	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000392258	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000392258	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
intron-3CDS	ENST00000490682	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
intron-3CDS	ENST00000490682	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
intron-intron	ENST00000490682	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
intron-intron	ENST00000490682	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000358485	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000358485	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000358485	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000358485	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000323492	ENST00000272793		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000323492	ENST00000418381		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000323492	ENST00000392631		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
5CDS-intron	ENST00000323492	ENST00000465630		TCGA	RV	LUAD	TCGA-44-2665-01A	CASP8	chr2	202131514	+	UBR3	chr2	170789422	+
Frame-shit	ENST00000256343	ENST00000435962		TCGA	RV	LUAD	TCGA-44-5645-01A	CATSPERB	chr14	92185762	-	TC2N	chr14	92268765	-
Frame-shit	ENST00000256343	ENST00000340892		TCGA	RV	LUAD	TCGA-44-5645-01A	CATSPERB	chr14	92185762	-	TC2N	chr14	92268765	-
Frame-shit	ENST00000256343	ENST00000360594		TCGA	RV	LUAD	TCGA-44-5645-01A	CATSPERB	chr14	92185762	-	TC2N	chr14	92268765	-
Frame-shit	ENST00000256343	ENST00000556018		TCGA	RV	LUAD	TCGA-44-5645-01A	CATSPERB	chr14	92185762	-	TC2N	chr14	92268765	-
5CDS-intron	ENST00000256343	ENST00000555302		TCGA	RV	LUAD	TCGA-44-5645-01A	CATSPERB	chr14	92185762	-	TC2N	chr14	92268765	-
3UTR-3CDS	ENST00000372836	ENST00000292174		TCGA	RV	LUAD	TCGA-78-7539-01A	CNPY3	chr6	42907007	+	CXCR5	chr11	118754475	+
Frame-shit	ENST00000394142	ENST00000292174		TCGA	RV	LUAD	TCGA-78-7539-01A	CNPY3	chr6	42907007	+	CXCR5	chr11	118754475	+
In-frame	ENST00000265085	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000265085	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000265085	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000265085	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
In-frame	ENST00000520867	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000520867	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000520867	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000520867	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
In-frame	ENST00000334035	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000334035	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000334035	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000334035	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
Frame-shit	ENST00000519835	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000519835	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000519835	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000519835	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
In-frame	ENST00000522336	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000522336	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000522336	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000522336	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
In-frame	ENST00000517880	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000517880	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000517880	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
5CDS-intron	ENST00000517880	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
3UTR-3CDS	ENST00000519467	ENST00000397936		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
3UTR-intron	ENST00000519467	ENST00000541094		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
3UTR-intron	ENST00000519467	ENST00000398521		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
3UTR-intron	ENST00000519467	ENST00000398523		TCGA	RV	LUAD	TCGA-55-A491-01A	CPEB4	chr5	173380275	+	STK32A	chr5	146750217	+
intron-3CDS	ENST00000585509	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000585509	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000585509	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000585509	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000585509	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000585509	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000585509	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000589297	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000589297	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000589297	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000589297	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000589297	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000589297	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000589297	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000591455	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000591455	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000591455	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000591455	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000591455	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000591455	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000591455	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000446868	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000446868	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000446868	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000446868	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000446868	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000446868	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000446868	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000361101	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000361101	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000361101	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000361101	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000361101	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000361101	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000361101	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000589296	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000589296	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000589296	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000589296	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000589296	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000589296	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000589296	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000586175	ENST00000509603		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-3CDS	ENST00000586175	ENST00000319524		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000586175	ENST00000268763		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-5UTR	ENST00000586175	ENST00000398988		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000586175	ENST00000581975		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000586175	ENST00000582410		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
intron-intron	ENST00000586175	ENST00000578981		TCGA	RV	LUAD	TCGA-44-A47B-01A	CYTH1	chr17	76732774	-	KSR1	chr17	25877594	+
Frame-shit	ENST00000341516	ENST00000321731		TCGA	RV	LUAD	TCGA-78-7143-01A	DCAF5	chr14	69558391	-	C14orf39	chr14	60938457	-
Frame-shit	ENST00000554215	ENST00000321731		TCGA	RV	LUAD	TCGA-78-7143-01A	DCAF5	chr14	69558391	-	C14orf39	chr14	60938457	-
Frame-shit	ENST00000556847	ENST00000321731		TCGA	RV	LUAD	TCGA-78-7143-01A	DCAF5	chr14	69558391	-	C14orf39	chr14	60938457	-
Frame-shit	ENST00000557386	ENST00000321731		TCGA	RV	LUAD	TCGA-78-7143-01A	DCAF5	chr14	69558391	-	C14orf39	chr14	60938457	-
Frame-shit	ENST00000389997	ENST00000321731		TCGA	RV	LUAD	TCGA-78-7143-01A	DCAF5	chr14	69558391	-	C14orf39	chr14	60938457	-
5UTR-3CDS	ENST00000553293	ENST00000321731		TCGA	RV	LUAD	TCGA-78-7143-01A	DCAF5	chr14	69558391	-	C14orf39	chr14	60938457	-
intron-5UTR	ENST00000371269	ENST00000318561		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000521315		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000437090		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000520605		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000522109		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000524255		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-intron	ENST00000371269	ENST00000522880		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000318561		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000521315		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000437090		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000520605		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000522109		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000524255		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-intron	ENST00000537443	ENST00000522880		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000318561		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000521315		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000437090		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000520605		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000522109		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000524255		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-intron	ENST00000535035	ENST00000522880		TCGA	RV	LUAD	TCGA-38-4626-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000540306	ENST00000434000		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-5UTR	ENST00000540306	ENST00000591680		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000540306	ENST00000586265		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000540306	ENST00000592154		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000540306	ENST00000588554		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-5UTR	ENST00000262415	ENST00000434000		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-5UTR	ENST00000262415	ENST00000591680		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000262415	ENST00000586265		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000262415	ENST00000592154		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000262415	ENST00000588554		TCGA	RV	LUAD	TCGA-55-7911-01A	DHX8	chr17	41585888	+	GPATCH8	chr17	42552271	-
Frame-shit	ENST00000315677	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000315677	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000315677	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000315677	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000315677	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000315677	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000315677	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581527	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581527	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581527	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581527	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581527	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000581527	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000581527	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400147	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400147	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400147	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400147	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400147	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000400147	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000400147	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400149	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400149	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400149	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400149	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400149	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000400149	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000400149	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400155	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400155	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400155	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400155	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400155	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000400155	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000400155	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400150	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400150	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400150	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400150	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400150	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000400150	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000400150	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000584874	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000584874	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000584874	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000584874	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000584874	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000584874	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000584874	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000534970	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000534970	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000534970	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000534970	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000534970	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000534970	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000534970	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000539435	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000539435	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000539435	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000539435	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000539435	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000539435	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000539435	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581699	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581699	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581699	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581699	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000581699	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000581699	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000581699	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400145	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400145	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400145	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400145	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
Frame-shit	ENST00000400145	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000400145	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000400145	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
In-frame	ENST00000515196	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
In-frame	ENST00000515196	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
In-frame	ENST00000515196	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
In-frame	ENST00000515196	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
In-frame	ENST00000515196	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-5UTR	ENST00000515196	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
5CDS-intron	ENST00000515196	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-3CDS	ENST00000478161	ENST00000383578		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-3CDS	ENST00000478161	ENST00000319815		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-3CDS	ENST00000478161	ENST00000251101		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-3CDS	ENST00000478161	ENST00000340116		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-3CDS	ENST00000478161	ENST00000580982		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-5UTR	ENST00000478161	ENST00000583973		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
intron-intron	ENST00000478161	ENST00000539164		TCGA	RV	LUAD	TCGA-38-4632-01A	DLGAP1	chr18	3534192	-	ENOSF1	chr18	675402	-
In-frame	ENST00000296218	ENST00000370620		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
In-frame	ENST00000296218	ENST00000370622		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
In-frame	ENST00000296218	ENST00000250617		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
In-frame	ENST00000296218	ENST00000535227		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000541606	ENST00000370620		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000541606	ENST00000370622		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000541606	ENST00000250617		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000541606	ENST00000535227		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000370620		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000370622		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000250617		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000535227		TCGA	RV	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38023349	+	ARHGEF6	chrX	135790929	-
intron-5UTR	ENST00000556931	ENST00000357836		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000556931	ENST00000336751		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000556931	ENST00000497365		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-intron	ENST00000556931	ENST00000475797		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000505139	ENST00000357836		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000505139	ENST00000336751		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000505139	ENST00000497365		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-intron	ENST00000505139	ENST00000475797		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000368408	ENST00000357836		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000368408	ENST00000336751		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000368408	ENST00000497365		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-intron	ENST00000368408	ENST00000475797		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000418360	ENST00000357836		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000418360	ENST00000336751		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000418360	ENST00000497365		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
5CDS-intron	ENST00000418360	ENST00000475797		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000498667	ENST00000357836		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000498667	ENST00000336751		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-5UTR	ENST00000498667	ENST00000497365		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-intron	ENST00000498667	ENST00000475797		TCGA	RV	LUAD	TCGA-78-7539-01A	EFNA3	chr1	155051545	+	HFE2	chr1	145415279	+
intron-3CDS	ENST00000559624	ENST00000306730		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
intron-5UTR	ENST00000559624	ENST00000558136		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
Frame-shit	ENST00000382727	ENST00000306730		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
5CDS-5UTR	ENST00000382727	ENST00000558136		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
Frame-shit	ENST00000263791	ENST00000306730		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
5CDS-5UTR	ENST00000263791	ENST00000558136		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
intron-3CDS	ENST00000560648	ENST00000306730		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
intron-5UTR	ENST00000560648	ENST00000558136		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
3UTR-3CDS	ENST00000559311	ENST00000306730		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
3UTR-5UTR	ENST00000559311	ENST00000558136		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	EIF2AK4	chr15	40294989	+	AVEN	chr15	34160056	-
Frame-shit	ENST00000589876	ENST00000377735		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000589876	ENST00000270223		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
5CDS-5UTR	ENST00000589876	ENST00000601370		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000245925	ENST00000377735		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000245925	ENST00000270223		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
5CDS-5UTR	ENST00000245925	ENST00000601370		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000536630	ENST00000377735		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000536630	ENST00000270223		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
5CDS-5UTR	ENST00000536630	ENST00000601370		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000587152	ENST00000377735		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
Frame-shit	ENST00000587152	ENST00000270223		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
5CDS-5UTR	ENST00000587152	ENST00000601370		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
intron-3CDS	ENST00000586902	ENST00000377735		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
intron-3CDS	ENST00000586902	ENST00000270223		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
intron-5UTR	ENST00000586902	ENST00000601370		TCGA	RV	LUAD	TCGA-55-A48Y-01A	EML2	chr19	46120888	-	DMWD	chr19	46290129	-
5UTR-3CDS	ENST00000543523	ENST00000381847		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
5UTR-3CDS	ENST00000543523	ENST00000396400		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
5UTR-3CDS	ENST00000281172	ENST00000381847		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
5UTR-3CDS	ENST00000281172	ENST00000396400		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
intron-3CDS	ENST00000543612	ENST00000381847		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
intron-3CDS	ENST00000543612	ENST00000396400		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
intron-3CDS	ENST00000540613	ENST00000381847		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
intron-3CDS	ENST00000540613	ENST00000396400		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
intron-3CDS	ENST00000542903	ENST00000381847		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
intron-3CDS	ENST00000542903	ENST00000396400		TCGA	RV	LUAD	TCGA-78-7536-01A	EPS8	chr12	15942095	-	PRH2	chr12	11082868	+
5CDS-5UTR	ENST00000272427	ENST00000474528		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
5CDS-5UTR	ENST00000272427	ENST00000272433		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
5CDS-5UTR	ENST00000272427	ENST00000410065		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
intron-5UTR	ENST00000490919	ENST00000474528		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
intron-5UTR	ENST00000490919	ENST00000272433		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
intron-5UTR	ENST00000490919	ENST00000410065		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
5CDS-5UTR	ENST00000410104	ENST00000474528		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
5CDS-5UTR	ENST00000410104	ENST00000272433		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
5CDS-5UTR	ENST00000410104	ENST00000410065		TCGA	RV	LUAD	TCGA-64-1680-01A	EXOC6B	chr2	72945232	-	SFXN5	chr2	73172228	-
5UTR-3CDS	ENST00000418596	ENST00000286190		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
5UTR-3CDS	ENST00000418596	ENST00000405148		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
5UTR-3CDS	ENST00000418596	ENST00000392257		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
5UTR-3CDS	ENST00000418596	ENST00000439709		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
5UTR-intron	ENST00000418596	ENST00000448967		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000485144	ENST00000286190		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000485144	ENST00000405148		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000485144	ENST00000392257		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
intron-3CDS	ENST00000485144	ENST00000439709		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
intron-intron	ENST00000485144	ENST00000448967		TCGA	RV	LUAD	TCGA-55-8302-01A	FAM126B	chr2	201936333	-	ALS2CR12	chr2	202154508	-
In-frame	ENST00000373954	ENST00000319394		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
In-frame	ENST00000373954	ENST00000361771		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000419687	ENST00000319394		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000419687	ENST00000361771		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
In-frame	ENST00000530324	ENST00000319394		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
In-frame	ENST00000530324	ENST00000361771		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000234549	ENST00000319394		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000234549	ENST00000361771		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000373949	ENST00000319394		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000373949	ENST00000361771		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
In-frame	ENST00000010299	ENST00000319394		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
In-frame	ENST00000010299	ENST00000361771		TCGA	RV	LUAD	TCGA-44-6778-01A	FAM76A	chr1	28075665	+	WDTC1	chr1	27631492	+
intron-3CDS	ENST00000324331	ENST00000298375		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000324331	ENST00000525281		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000324331	ENST00000532248		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000324331	ENST00000334019		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000324331	ENST00000345253		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
5UTR-3CDS	ENST00000274680	ENST00000298375		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000274680	ENST00000525281		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000274680	ENST00000532248		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000274680	ENST00000334019		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000274680	ENST00000345253		TCGA	RV	LUAD	TCGA-55-8620-01A	FARS2	chr6	5261893	+	AKR1E2	chr10	4872867	+
intron-5UTR	ENST00000425967	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000425967	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000425967	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000425967	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397091	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397091	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397091	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000397091	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000447712	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000447712	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000447712	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000447712	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000341462	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000341462	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000341462	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000341462	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000532791	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000532791	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000532791	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-intron	ENST00000532791	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397113	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397113	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397113	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000397113	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000356207	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000356207	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000356207	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000356207	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000335922	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000335922	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000335922	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
5CDS-intron	ENST00000335922	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000326324	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000326324	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000326324	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000326324	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397103	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397103	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397103	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000397103	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397108	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397108	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000397108	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000397108	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000496629	ENST00000342228		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000496629	ENST00000520262		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000496629	ENST00000520179		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
intron-intron	ENST00000496629	ENST00000523340		TCGA	RV	LUAD	TCGA-69-8255-01A	FGFR1	chr8	38277057	-	SLC20A2	chr8	42330172	-
Frame-shit	ENST00000511601	ENST00000451320		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000511601	ENST00000429148		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000511601	ENST00000353617		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000511601	ENST00000405727		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000511601	ENST00000356064		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
5CDS-intron	ENST00000511601	ENST00000511289		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000260008	ENST00000451320		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000260008	ENST00000429148		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000260008	ENST00000353617		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000260008	ENST00000405727		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
Frame-shit	ENST00000260008	ENST00000356064		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
5CDS-intron	ENST00000260008	ENST00000511289		TCGA	RV	LUAD	TCGA-44-7670-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153809285	+
5UTR-5UTR	ENST00000476844	ENST00000295569		TCGA	RV	LUAD	TCGA-67-6217-01A	FHIT	chr3	60807613	-	FAM19A4	chr3	68934461	-
5UTR-5UTR	ENST00000492590	ENST00000295569		TCGA	RV	LUAD	TCGA-67-6217-01A	FHIT	chr3	60807613	-	FAM19A4	chr3	68934461	-
intron-5UTR	ENST00000466788	ENST00000295569		TCGA	RV	LUAD	TCGA-67-6217-01A	FHIT	chr3	60807613	-	FAM19A4	chr3	68934461	-
5UTR-5UTR	ENST00000468189	ENST00000295569		TCGA	RV	LUAD	TCGA-67-6217-01A	FHIT	chr3	60807613	-	FAM19A4	chr3	68934461	-
intron-5UTR	ENST00000341848	ENST00000295569		TCGA	RV	LUAD	TCGA-67-6217-01A	FHIT	chr3	60807613	-	FAM19A4	chr3	68934461	-
5CDS-intron	ENST00000331825	ENST00000257261		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000331825	ENST00000522056		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000331825	ENST00000278840		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000331825	ENST00000521849		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000331825	ENST00000574708		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000331825	ENST00000522639		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5CDS-intron	ENST00000331825	ENST00000517839		TCGA	RV	LUAD	TCGA-73-4659-01A	FTL	chr19	49470135	+	FADS2	chr11	61588853	+
5UTR-5UTR	ENST00000539526	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000539526	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000539526	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000540359	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000540359	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000540359	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000260282	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000260282	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000260282	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-5UTR	ENST00000527717	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-5UTR	ENST00000527717	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-3UTR	ENST00000527717	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000526014	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000526014	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000526014	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-5UTR	ENST00000524656	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-5UTR	ENST00000524656	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-3UTR	ENST00000524656	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000584394	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000584394	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000584394	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000529335	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000529335	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000529335	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-5UTR	ENST00000583233	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-5UTR	ENST00000583233	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
intron-3UTR	ENST00000583233	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000527429	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000527429	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000527429	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000530956	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000530956	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000530956	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000584230	ENST00000392883		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-5UTR	ENST00000584230	ENST00000532917		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
5UTR-3UTR	ENST00000584230	ENST00000532903		TCGA	RV	LUAD	TCGA-44-7667-01A	FXYD6	chr11	117747307	-	CD3G	chr11	118219742	+
3UTR-3CDS	ENST00000482812	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
3UTR-3CDS	ENST00000482812	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
3UTR-3CDS	ENST00000482812	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
3UTR-3CDS	ENST00000482812	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
3UTR-3UTR	ENST00000482812	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
3UTR-3UTR	ENST00000482812	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3CDS	ENST00000430044	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3CDS	ENST00000430044	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3CDS	ENST00000430044	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3CDS	ENST00000430044	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3UTR	ENST00000430044	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3UTR	ENST00000430044	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
Frame-shit	ENST00000452146	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
Frame-shit	ENST00000452146	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
Frame-shit	ENST00000452146	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
Frame-shit	ENST00000452146	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5CDS-3UTR	ENST00000452146	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5CDS-3UTR	ENST00000452146	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000434507	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000434507	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000434507	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000434507	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000434507	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000434507	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000415421	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000415421	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000415421	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000415421	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000415421	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000415421	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000320311	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000320311	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000320311	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000320311	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000320311	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000320311	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000422997	ENST00000404039		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000422997	ENST00000406326		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000422997	ENST00000377770		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3CDS	ENST00000422997	ENST00000332007		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000422997	ENST00000496611		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
intron-3UTR	ENST00000422997	ENST00000427557		TCGA	RV	LUAD	TCGA-78-7143-01A	GALNT11	chr7	151722969	+	DPP6	chr7	154143299	+
5UTR-3CDS	ENST00000368655	ENST00000368346		TCGA	RV	LUAD	TCGA-97-A4M3-01A	GATAD2B	chr1	153895209	-	ASH1L	chr1	155349907	-
5UTR-3CDS	ENST00000368655	ENST00000392403		TCGA	RV	LUAD	TCGA-97-A4M3-01A	GATAD2B	chr1	153895209	-	ASH1L	chr1	155349907	-
5UTR-intron	ENST00000368655	ENST00000548830		TCGA	RV	LUAD	TCGA-97-A4M3-01A	GATAD2B	chr1	153895209	-	ASH1L	chr1	155349907	-
intron-3CDS	ENST00000410107	ENST00000215781		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000410107	ENST00000403389		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-intron	ENST00000410107	ENST00000403463		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-3CDS	ENST00000397423	ENST00000215781		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000397423	ENST00000403389		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-intron	ENST00000397423	ENST00000403463		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
In-frame	ENST00000495262	ENST00000215781		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
5CDS-5UTR	ENST00000495262	ENST00000403389		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
5CDS-intron	ENST00000495262	ENST00000403463		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
In-frame	ENST00000379597	ENST00000215781		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
5CDS-5UTR	ENST00000379597	ENST00000403389		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
5CDS-intron	ENST00000379597	ENST00000403463		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-3CDS	ENST00000316170	ENST00000215781		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000316170	ENST00000403389		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-intron	ENST00000316170	ENST00000403463		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-3CDS	ENST00000265012	ENST00000215781		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000265012	ENST00000403389		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
intron-intron	ENST00000265012	ENST00000403463		TCGA	RV	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10530069	+	OSM	chr22	30661133	-
In-frame	ENST00000220940	ENST00000318528		TCGA	RV	LUAD	TCGA-67-3771-01A	GML	chr8	143922641	+	C8orf47	chr8	99101304	+
5CDS-intron	ENST00000220940	ENST00000545282		TCGA	RV	LUAD	TCGA-67-3771-01A	GML	chr8	143922641	+	C8orf47	chr8	99101304	+
In-frame	ENST00000389617	ENST00000304076		TCGA	RV	LUAD	TCGA-97-A4M5-01A	GXYLT2	chr3	72971486	+	VAV1	chr19	6821633	+
In-frame	ENST00000389617	ENST00000602142		TCGA	RV	LUAD	TCGA-97-A4M5-01A	GXYLT2	chr3	72971486	+	VAV1	chr19	6821633	+
In-frame	ENST00000389617	ENST00000596764		TCGA	RV	LUAD	TCGA-97-A4M5-01A	GXYLT2	chr3	72971486	+	VAV1	chr19	6821633	+
In-frame	ENST00000389617	ENST00000539284		TCGA	RV	LUAD	TCGA-97-A4M5-01A	GXYLT2	chr3	72971486	+	VAV1	chr19	6821633	+
In-frame	ENST00000389617	ENST00000599806		TCGA	RV	LUAD	TCGA-97-A4M5-01A	GXYLT2	chr3	72971486	+	VAV1	chr19	6821633	+
intron-3CDS	ENST00000406451	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000406451	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000406451	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000406451	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000406451	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000406451	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000401921	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000401921	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000401921	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000401921	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000401921	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000401921	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000432645	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000432645	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000432645	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000432645	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000432645	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000432645	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000441542	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000441542	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000441542	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000441542	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000441542	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000441542	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
Frame-shit	ENST00000417496	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
Frame-shit	ENST00000417496	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
Frame-shit	ENST00000417496	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
5CDS-5UTR	ENST00000417496	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
5CDS-intron	ENST00000417496	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
5CDS-intron	ENST00000417496	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000476135	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000476135	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000476135	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000476135	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000476135	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000476135	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000405010	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000405010	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000405010	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000405010	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000405010	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000405010	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000428307	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000428307	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000428307	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000428307	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000428307	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000428307	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000406072	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000406072	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000406072	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000406072	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000406072	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000406072	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000456174	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000456174	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000456174	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000456174	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000456174	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000456174	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000524023	ENST00000338523		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000524023	ENST00000446848		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000524023	ENST00000396376		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-5UTR	ENST00000524023	ENST00000409367		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000524023	ENST00000409838		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-intron	ENST00000524023	ENST00000462993		TCGA	RV	LUAD	TCGA-69-7978-01A	HDAC9	chr7	18201972	+	SNX10	chr7	26400595	+
intron-3CDS	ENST00000391976	ENST00000383699		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000391976	ENST00000407528		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000391976	ENST00000405615		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-intron	ENST00000391976	ENST00000485126		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000310931	ENST00000383699		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000310931	ENST00000407528		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000310931	ENST00000405615		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
5UTR-intron	ENST00000310931	ENST00000485126		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000391975	ENST00000383699		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000391975	ENST00000407528		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000391975	ENST00000405615		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-intron	ENST00000391975	ENST00000485126		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000427183	ENST00000383699		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000427183	ENST00000407528		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000427183	ENST00000405615		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-intron	ENST00000427183	ENST00000485126		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000476807	ENST00000383699		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000476807	ENST00000407528		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000476807	ENST00000405615		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
intron-intron	ENST00000476807	ENST00000485126		TCGA	RV	LUAD	TCGA-50-5933-01A	HDLBP	chr2	242254985	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000273221	ENST00000256594		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
Frame-shit	ENST00000273221	ENST00000540225		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
Frame-shit	ENST00000273221	ENST00000361066		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
5CDS-5UTR	ENST00000273221	ENST00000488824		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
intron-3CDS	ENST00000473088	ENST00000256594		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
intron-3CDS	ENST00000473088	ENST00000540225		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
intron-3CDS	ENST00000473088	ENST00000361066		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
intron-5UTR	ENST00000473088	ENST00000488824		TCGA	RV	LUAD	TCGA-78-7161-01A	IQSEC1	chr3	13008887	-	GSTM3	chr1	110282115	-
5CDS-5UTR	ENST00000258111	ENST00000530069		TCGA	RV	LUAD	TCGA-91-6840-01A	KCNMB4	chr12	70760850	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000258111	ENST00000349015		TCGA	RV	LUAD	TCGA-91-6840-01A	KCNMB4	chr12	70760850	+	ALDH3B2	chr11	67435106	-
5CDS-5UTR	ENST00000258111	ENST00000531881		TCGA	RV	LUAD	TCGA-91-6840-01A	KCNMB4	chr12	70760850	+	ALDH3B2	chr11	67435106	-
5CDS-3UTR	ENST00000584767	ENST00000335464		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000584767	ENST00000417024		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000584767	ENST00000582773		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000584767	ENST00000582330		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-intron	ENST00000584767	ENST00000584171		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5UTR-3UTR	ENST00000581589	ENST00000335464		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5UTR-3UTR	ENST00000581589	ENST00000417024		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5UTR-3UTR	ENST00000581589	ENST00000582773		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5UTR-3UTR	ENST00000581589	ENST00000582330		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5UTR-intron	ENST00000581589	ENST00000584171		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000322444	ENST00000335464		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000322444	ENST00000417024		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000322444	ENST00000582773		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-3UTR	ENST00000322444	ENST00000582330		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5CDS-intron	ENST00000322444	ENST00000584171		TCGA	RV	LUAD	TCGA-55-6969-01A	KCTD2	chr17	73045423	+	TMEM104	chr17	72835026	+
5UTR-3CDS	ENST00000254846	ENST00000572933		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-3CDS	ENST00000254846	ENST00000389173		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-intron	ENST00000254846	ENST00000570791		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-intron	ENST00000254846	ENST00000082259		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-3CDS	ENST00000448097	ENST00000572933		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-3CDS	ENST00000448097	ENST00000389173		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-intron	ENST00000448097	ENST00000570791		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-intron	ENST00000448097	ENST00000082259		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
3UTR-3CDS	ENST00000572030	ENST00000572933		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
3UTR-3CDS	ENST00000572030	ENST00000389173		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
3UTR-intron	ENST00000572030	ENST00000570791		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
3UTR-intron	ENST00000572030	ENST00000082259		TCGA	RV	LUAD	TCGA-67-3770-01A	KDM6B	chr17	7743342	+	DNAH2	chr17	7704896	+
5UTR-5UTR	ENST00000342745	ENST00000281741		TCGA	RV	LUAD	TCGA-55-A4DF-01A	KIAA0247	chr14	70078545	+	TXNDC16	chr14	53011089	-
5UTR-intron	ENST00000342745	ENST00000554399		TCGA	RV	LUAD	TCGA-55-A4DF-01A	KIAA0247	chr14	70078545	+	TXNDC16	chr14	53011089	-
3UTR-5UTR	ENST00000553497	ENST00000281741		TCGA	RV	LUAD	TCGA-55-A4DF-01A	KIAA0247	chr14	70078545	+	TXNDC16	chr14	53011089	-
3UTR-intron	ENST00000553497	ENST00000554399		TCGA	RV	LUAD	TCGA-55-A4DF-01A	KIAA0247	chr14	70078545	+	TXNDC16	chr14	53011089	-
intron-3CDS	ENST00000400105	ENST00000389658		TCGA	RV	LUAD	TCGA-75-6214-01A	L3MBTL4	chr18	6414800	-	LAMA1	chr18	6962058	-
5UTR-3CDS	ENST00000317931	ENST00000389658		TCGA	RV	LUAD	TCGA-75-6214-01A	L3MBTL4	chr18	6414800	-	LAMA1	chr18	6962058	-
5UTR-3CDS	ENST00000284898	ENST00000389658		TCGA	RV	LUAD	TCGA-75-6214-01A	L3MBTL4	chr18	6414800	-	LAMA1	chr18	6962058	-
5UTR-3CDS	ENST00000400104	ENST00000389658		TCGA	RV	LUAD	TCGA-75-6214-01A	L3MBTL4	chr18	6414800	-	LAMA1	chr18	6962058	-
intron-3CDS	ENST00000535782	ENST00000389658		TCGA	RV	LUAD	TCGA-75-6214-01A	L3MBTL4	chr18	6414800	-	LAMA1	chr18	6962058	-
intron-3CDS	ENST00000578677	ENST00000389658		TCGA	RV	LUAD	TCGA-75-6214-01A	L3MBTL4	chr18	6414800	-	LAMA1	chr18	6962058	-
Frame-shit	ENST00000313654	ENST00000334049		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000313654	ENST00000535121		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000313654	ENST00000269162		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000313654	ENST00000423027		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
5CDS-3UTR	ENST00000313654	ENST00000590972		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
5CDS-intron	ENST00000313654	ENST00000602628		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000399516	ENST00000334049		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000399516	ENST00000535121		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000399516	ENST00000269162		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000399516	ENST00000423027		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
5CDS-3UTR	ENST00000399516	ENST00000590972		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
5CDS-intron	ENST00000399516	ENST00000602628		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000269217	ENST00000334049		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000269217	ENST00000535121		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000269217	ENST00000269162		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000269217	ENST00000423027		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3UTR	ENST00000269217	ENST00000590972		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-intron	ENST00000269217	ENST00000602628		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000587184	ENST00000334049		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000587184	ENST00000535121		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000587184	ENST00000269162		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000587184	ENST00000423027		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3UTR	ENST00000587184	ENST00000590972		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-intron	ENST00000587184	ENST00000602628		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000588770	ENST00000334049		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000588770	ENST00000535121		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000588770	ENST00000269162		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3CDS	ENST00000588770	ENST00000423027		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-3UTR	ENST00000588770	ENST00000590972		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
intron-intron	ENST00000588770	ENST00000602628		TCGA	RV	LUAD	TCGA-44-7670-01A	LAMA3	chr18	21294036	+	GNAL	chr18	11753627	+
Frame-shit	ENST00000267102	ENST00000395324		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000267102	ENST00000229022		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000267102	ENST00000549336		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000267102	ENST00000550325		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000267102	ENST00000535672		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000547382	ENST00000395324		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000547382	ENST00000229022		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000547382	ENST00000549336		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000547382	ENST00000550325		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
Frame-shit	ENST00000547382	ENST00000535672		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000395141	ENST00000395324		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000395141	ENST00000229022		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000395141	ENST00000549336		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000395141	ENST00000550325		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000395141	ENST00000535672		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
5UTR-3CDS	ENST00000553204	ENST00000395324		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
5UTR-3CDS	ENST00000553204	ENST00000229022		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
5UTR-3CDS	ENST00000553204	ENST00000549336		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
5UTR-3CDS	ENST00000553204	ENST00000550325		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
5UTR-3CDS	ENST00000553204	ENST00000535672		TCGA	RV	LUAD	TCGA-55-A493-01A	LMBR1L	chr12	49504267	-	VDR	chr12	48240591	-
5CDS-5UTR	ENST00000342310	ENST00000368747		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LMX1A	chr1	165322313	-	LELP1	chr1	153177163	+
5CDS-5UTR	ENST00000294816	ENST00000368747		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LMX1A	chr1	165322313	-	LELP1	chr1	153177163	+
5CDS-5UTR	ENST00000367893	ENST00000368747		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LMX1A	chr1	165322313	-	LELP1	chr1	153177163	+
intron-5UTR	ENST00000489443	ENST00000368747		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LMX1A	chr1	165322313	-	LELP1	chr1	153177163	+
5CDS-5UTR	ENST00000261407	ENST00000433346		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-3UTR	ENST00000261407	ENST00000449039		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000261407	ENST00000007969		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000261407	ENST00000323702		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000261407	ENST00000443597		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000261407	ENST00000436789		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000261407	ENST00000429740		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000535021	ENST00000433346		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000535021	ENST00000449039		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000535021	ENST00000007969		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000535021	ENST00000323702		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000535021	ENST00000443597		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000535021	ENST00000436789		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000535021	ENST00000429740		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6992868	+
5CDS-5UTR	ENST00000306708	ENST00000270530		TCGA	RV	LUAD	TCGA-38-4630-01A	LRRC8E	chr19	7960626	+	EVI5L	chr19	7911382	+
5CDS-intron	ENST00000306708	ENST00000538904		TCGA	RV	LUAD	TCGA-38-4630-01A	LRRC8E	chr19	7960626	+	EVI5L	chr19	7911382	+
5CDS-intron	ENST00000306708	ENST00000600802		TCGA	RV	LUAD	TCGA-38-4630-01A	LRRC8E	chr19	7960626	+	EVI5L	chr19	7911382	+
Frame-shit	ENST00000178640	ENST00000288840		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000178640	ENST00000457357		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000178640	ENST00000338426		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
intron-3CDS	ENST00000560591	ENST00000288840		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
intron-3CDS	ENST00000560591	ENST00000457357		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
intron-3CDS	ENST00000560591	ENST00000338426		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000395476	ENST00000288840		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000395476	ENST00000457357		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000395476	ENST00000338426		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000354498	ENST00000288840		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000354498	ENST00000457357		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000354498	ENST00000338426		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000340972	ENST00000288840		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000340972	ENST00000457357		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000340972	ENST00000338426		TCGA	RV	LUAD	TCGA-91-7771-01A	MAP2K5	chr15	67995746	+	SMAD6	chr15	67004006	+
Frame-shit	ENST00000374189	ENST00000374113		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374189	ENST00000374111		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374189	ENST00000535836		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374189	ENST00000374112		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374182	ENST00000374113		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374182	ENST00000374111		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374182	ENST00000535836		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374182	ENST00000374112		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000360332	ENST00000374113		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000360332	ENST00000374111		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000360332	ENST00000535836		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000360332	ENST00000374112		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374174	ENST00000374113		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374174	ENST00000374111		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374174	ENST00000535836		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000374174	ENST00000374112		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000395611	ENST00000374113		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000395611	ENST00000374111		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000395611	ENST00000535836		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
Frame-shit	ENST00000395611	ENST00000374112		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
intron-3CDS	ENST00000459755	ENST00000374113		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
intron-3CDS	ENST00000459755	ENST00000374111		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
intron-3CDS	ENST00000459755	ENST00000535836		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
intron-3CDS	ENST00000459755	ENST00000374112		TCGA	RV	LUAD	TCGA-05-4244-01A	MAPK8	chr10	49613024	+	C10orf53	chr10	50901820	+
intron-3CDS	ENST00000568630	ENST00000433424		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
intron-3CDS	ENST00000568630	ENST00000394458		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
intron-3CDS	ENST00000568630	ENST00000404085		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
intron-3CDS	ENST00000568630	ENST00000594072		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
intron-3CDS	ENST00000568630	ENST00000598347		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
Frame-shit	ENST00000545763	ENST00000433424		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000545763	ENST00000394458		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000545763	ENST00000404085		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000545763	ENST00000594072		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000545763	ENST00000598347		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
Frame-shit	ENST00000389936	ENST00000433424		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000389936	ENST00000394458		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000389936	ENST00000404085		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000389936	ENST00000594072		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000389936	ENST00000598347		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
Frame-shit	ENST00000219905	ENST00000433424		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000219905	ENST00000394458		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000219905	ENST00000404085		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000219905	ENST00000594072		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000219905	ENST00000598347		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
Frame-shit	ENST00000566586	ENST00000433424		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000566586	ENST00000394458		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000566586	ENST00000404085		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000566586	ENST00000594072		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000566586	ENST00000598347		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
Frame-shit	ENST00000570161	ENST00000433424		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000570161	ENST00000394458		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000570161	ENST00000404085		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000570161	ENST00000594072		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
In-frame	ENST00000570161	ENST00000598347		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	ANKLE1	chr19	17396240	+
5UTR-3CDS	ENST00000441493	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000441493	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-intron	ENST00000441493	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000400561	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000400561	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000400561	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000444520	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000444520	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-intron	ENST00000444520	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000414725	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000414725	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000414725	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000383094	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000383094	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000383094	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000207726	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000207726	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-intron	ENST00000207726	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000429452	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-3CDS	ENST00000429452	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
5UTR-intron	ENST00000429452	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000585038	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000585038	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000585038	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000580469	ENST00000327451		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000580469	ENST00000399813		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000580469	ENST00000497401		TCGA	RV	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18507047	-	SLC25A18	chr22	18069902	+
Frame-shit	ENST00000280285	ENST00000265069		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
5CDS-5UTR	ENST00000280285	ENST00000510369		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
Frame-shit	ENST00000382142	ENST00000265069		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
5CDS-5UTR	ENST00000382142	ENST00000510369		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
Frame-shit	ENST00000264934	ENST00000265069		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
5CDS-5UTR	ENST00000264934	ENST00000510369		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
intron-3CDS	ENST00000510216	ENST00000265069		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
intron-5UTR	ENST00000510216	ENST00000510369		TCGA	RV	LUAD	TCGA-64-1680-01A	MTMR12	chr5	32255799	-	ZFR	chr5	32356045	-
5CDS-5UTR	ENST00000361671	ENST00000371785		TCGA	RV	LUAD	TCGA-97-8174-01A	NAA35	chr9	88577095	+	MRPS2	chr9	138392416	+
5CDS-intron	ENST00000361671	ENST00000241600		TCGA	RV	LUAD	TCGA-97-8174-01A	NAA35	chr9	88577095	+	MRPS2	chr9	138392416	+
5CDS-intron	ENST00000361671	ENST00000488610		TCGA	RV	LUAD	TCGA-97-8174-01A	NAA35	chr9	88577095	+	MRPS2	chr9	138392416	+
5CDS-5UTR	ENST00000376040	ENST00000371785		TCGA	RV	LUAD	TCGA-97-8174-01A	NAA35	chr9	88577095	+	MRPS2	chr9	138392416	+
5CDS-intron	ENST00000376040	ENST00000241600		TCGA	RV	LUAD	TCGA-97-8174-01A	NAA35	chr9	88577095	+	MRPS2	chr9	138392416	+
5CDS-intron	ENST00000376040	ENST00000488610		TCGA	RV	LUAD	TCGA-97-8174-01A	NAA35	chr9	88577095	+	MRPS2	chr9	138392416	+
5CDS-intron	ENST00000452400	ENST00000520273		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
5CDS-5UTR	ENST00000452400	ENST00000408926		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
5CDS-5UTR	ENST00000452400	ENST00000520030		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
5CDS-intron	ENST00000267974	ENST00000520273		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
5CDS-5UTR	ENST00000267974	ENST00000408926		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
5CDS-5UTR	ENST00000267974	ENST00000520030		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
intron-intron	ENST00000524223	ENST00000520273		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
intron-5UTR	ENST00000524223	ENST00000408926		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
intron-5UTR	ENST00000524223	ENST00000520030		TCGA	RV	LUAD	TCGA-91-7771-01A	NCOA2	chr8	71033537	-	XKR9	chr8	71587053	+
intron-3CDS	ENST00000405201	ENST00000373025		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000405201	ENST00000425343		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000404621	ENST00000373025		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000404621	ENST00000425343		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000404121	ENST00000373025		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000404121	ENST00000425343		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000356219	ENST00000373025		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000356219	ENST00000425343		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000397355	ENST00000373025		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000397355	ENST00000425343		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000429285	ENST00000373025		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
intron-3CDS	ENST00000429285	ENST00000425343		TCGA	RV	LUAD	TCGA-97-8174-01A	NCOR2	chr12	124809926	-	PGC	chr6	41715135	-
5UTR-3CDS	ENST00000349945	ENST00000258201		TCGA	RV	LUAD	TCGA-91-8496-01A	NFAT5	chr16	69602451	+	FHOD1	chr16	67266097	-
Frame-shit	ENST00000432919	ENST00000258201		TCGA	RV	LUAD	TCGA-91-8496-01A	NFAT5	chr16	69602451	+	FHOD1	chr16	67266097	-
intron-3CDS	ENST00000354436	ENST00000258201		TCGA	RV	LUAD	TCGA-91-8496-01A	NFAT5	chr16	69602451	+	FHOD1	chr16	67266097	-
Frame-shit	ENST00000567239	ENST00000258201		TCGA	RV	LUAD	TCGA-91-8496-01A	NFAT5	chr16	69602451	+	FHOD1	chr16	67266097	-
intron-3CDS	ENST00000393742	ENST00000258201		TCGA	RV	LUAD	TCGA-91-8496-01A	NFAT5	chr16	69602451	+	FHOD1	chr16	67266097	-
intron-3CDS	ENST00000566899	ENST00000258201		TCGA	RV	LUAD	TCGA-91-8496-01A	NFAT5	chr16	69602451	+	FHOD1	chr16	67266097	-
In-frame	ENST00000427025	ENST00000367630		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
In-frame	ENST00000427025	ENST00000367621		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
Frame-shit	ENST00000427025	ENST00000452973		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
5CDS-intron	ENST00000427025	ENST00000491881		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
In-frame	ENST00000343505	ENST00000367630		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
In-frame	ENST00000343505	ENST00000367621		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
Frame-shit	ENST00000343505	ENST00000452973		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
5CDS-intron	ENST00000343505	ENST00000491881		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
intron-3CDS	ENST00000479393	ENST00000367630		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
intron-3CDS	ENST00000479393	ENST00000367621		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
intron-3CDS	ENST00000479393	ENST00000452973		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
intron-intron	ENST00000479393	ENST00000491881		TCGA	RV	LUAD	TCGA-38-6178-01A	NHSL1	chr6	138750848	-	VTA1	chr6	142539635	+
5CDS-5UTR	ENST00000373736	ENST00000545834		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
5CDS-5UTR	ENST00000373736	ENST00000314666		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
5CDS-intron	ENST00000373736	ENST00000585319		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-5UTR	ENST00000263693	ENST00000545834		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-5UTR	ENST00000263693	ENST00000314666		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-intron	ENST00000263693	ENST00000585319		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-5UTR	ENST00000528449	ENST00000545834		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-5UTR	ENST00000528449	ENST00000314666		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-intron	ENST00000528449	ENST00000585319		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-5UTR	ENST00000398657	ENST00000545834		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-5UTR	ENST00000398657	ENST00000314666		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
intron-intron	ENST00000398657	ENST00000585319		TCGA	RV	LUAD	TCGA-62-8394-01A	NKAIN1	chr1	31712341	-	PFAS	chr17	8157484	+
Frame-shit	ENST00000530878	ENST00000367942		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
5CDS-intron	ENST00000530878	ENST00000476437		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
Frame-shit	ENST00000361897	ENST00000367942		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
5CDS-intron	ENST00000361897	ENST00000476437		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-3CDS	ENST00000493151	ENST00000367942		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-intron	ENST00000493151	ENST00000476437		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-3CDS	ENST00000454693	ENST00000367942		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-intron	ENST00000454693	ENST00000476437		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
Frame-shit	ENST00000530878	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
Frame-shit	ENST00000530878	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
5CDS-intron	ENST00000530878	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
Frame-shit	ENST00000361897	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
Frame-shit	ENST00000361897	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
5CDS-intron	ENST00000361897	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
intron-3CDS	ENST00000493151	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
intron-3CDS	ENST00000493151	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
intron-intron	ENST00000493151	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
intron-3CDS	ENST00000454693	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
intron-3CDS	ENST00000454693	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
intron-intron	ENST00000454693	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	NOS1AP	chr1	162313766	+	F5	chr1	169484864	-
Frame-shit	ENST00000474844	ENST00000515059		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000474844	ENST00000440890		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000474844	ENST00000264568		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000474844	ENST00000394931		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
5CDS-intron	ENST00000474844	ENST00000502683		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000536062	ENST00000515059		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000536062	ENST00000440890		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000536062	ENST00000264568		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000536062	ENST00000394931		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
5CDS-intron	ENST00000536062	ENST00000502683		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000537428	ENST00000515059		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000537428	ENST00000440890		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000537428	ENST00000264568		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
Frame-shit	ENST00000537428	ENST00000394931		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
5CDS-intron	ENST00000537428	ENST00000502683		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
3UTR-3CDS	ENST00000498008	ENST00000515059		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
3UTR-3CDS	ENST00000498008	ENST00000440890		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
3UTR-3CDS	ENST00000498008	ENST00000264568		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
3UTR-3CDS	ENST00000498008	ENST00000394931		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
3UTR-intron	ENST00000498008	ENST00000502683		TCGA	RV	LUAD	TCGA-44-7670-01A	NSUN4	chr1	46810816	+	BMPR1B	chr4	96044961	+
intron-5UTR	ENST00000331483	ENST00000379056		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000331483	ENST00000529421		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000331483	ENST00000530705		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000331483	ENST00000379060		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000331483	ENST00000379055		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000331483	ENST00000309246		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000576390	ENST00000379056		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000576390	ENST00000529421		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000576390	ENST00000530705		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000576390	ENST00000379060		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000576390	ENST00000379055		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000576390	ENST00000309246		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000439918	ENST00000379056		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000439918	ENST00000529421		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000439918	ENST00000530705		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000439918	ENST00000379060		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000439918	ENST00000379055		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000439918	ENST00000309246		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000472244	ENST00000379056		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000472244	ENST00000529421		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-5UTR	ENST00000472244	ENST00000530705		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000472244	ENST00000379060		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000472244	ENST00000379055		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
intron-intron	ENST00000472244	ENST00000309246		TCGA	RV	LUAD	TCGA-69-8255-01A	P4HB	chr17	79801410	-	TPT1	chr13	45915293	-
In-frame	ENST00000419197	ENST00000411458		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000419197	ENST00000539851		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000419197	ENST00000377702		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000419197	ENST00000438980		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000419197	ENST00000313074		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
intron-3CDS	ENST00000526888	ENST00000411458		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
intron-5UTR	ENST00000526888	ENST00000539851		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
intron-5UTR	ENST00000526888	ENST00000377702		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
intron-5UTR	ENST00000526888	ENST00000438980		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
intron-5UTR	ENST00000526888	ENST00000313074		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
In-frame	ENST00000527958	ENST00000411458		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000527958	ENST00000539851		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000527958	ENST00000377702		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000527958	ENST00000438980		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000527958	ENST00000313074		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
In-frame	ENST00000529887	ENST00000411458		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000529887	ENST00000539851		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000529887	ENST00000377702		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000529887	ENST00000438980		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000529887	ENST00000313074		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
In-frame	ENST00000530272	ENST00000411458		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000530272	ENST00000539851		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000530272	ENST00000377702		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000530272	ENST00000438980		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
5CDS-5UTR	ENST00000530272	ENST00000313074		TCGA	RV	LUAD	TCGA-69-7765-01A	PAFAH1B2	chr11	117023244	+	GPR137	chr11	64053982	+
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000340635	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000340635	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000360047	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000360047	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000507116	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000507116	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
5UTR-3CDS	ENST00000502484	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
5UTR-3CDS	ENST00000502484	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
5UTR-5UTR	ENST00000502484	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
5UTR-intron	ENST00000502484	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000546160	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000546160	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000546160	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000546160	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000502575	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000502575	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000358923	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000358923	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503258	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000503258	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000405755	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000405755	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000317118	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000317118	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503947	ENST00000453022		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000503947	ENST00000545085		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000401827	ENST00000400546		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000401827	ENST00000284894		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-5UTR	ENST00000401827	ENST00000535285		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000401827	ENST00000486367		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000396642	ENST00000400546		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000396642	ENST00000284894		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-5UTR	ENST00000396642	ENST00000535285		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000396642	ENST00000486367		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000379419	ENST00000400546		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000379419	ENST00000284894		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-5UTR	ENST00000379419	ENST00000535285		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000379419	ENST00000486367		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000518667	ENST00000400546		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000518667	ENST00000284894		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-5UTR	ENST00000518667	ENST00000535285		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
intron-intron	ENST00000518667	ENST00000486367		TCGA	RV	LUAD	TCGA-95-A4VN-01A	PDE7A	chr8	66750709	-	NCAM2	chr21	22582860	+
5CDS-5UTR	ENST00000502773	ENST00000395719		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000502773	ENST00000359707		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000502773	ENST00000357854		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-intron	ENST00000502773	ENST00000502654		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5UTR-5UTR	ENST00000541126	ENST00000395719		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5UTR-5UTR	ENST00000541126	ENST00000359707		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5UTR-5UTR	ENST00000541126	ENST00000357854		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5UTR-intron	ENST00000541126	ENST00000502654		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000422544	ENST00000395719		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000422544	ENST00000359707		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-5UTR	ENST00000422544	ENST00000357854		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5CDS-intron	ENST00000422544	ENST00000502654		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000504672	ENST00000395719		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000504672	ENST00000359707		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000504672	ENST00000357854		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-intron	ENST00000504672	ENST00000502654		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000542208	ENST00000395719		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000542208	ENST00000359707		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-5UTR	ENST00000542208	ENST00000357854		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
intron-intron	ENST00000542208	ENST00000502654		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PDGFC	chr4	157891938	-	G3BP2	chr4	76587233	-
5UTR-3CDS	ENST00000315596	ENST00000309424		TCGA	RV	LUAD	TCGA-50-6591-01A	PDS5B	chr13	33160730	+	CD3EAP	chr19	45910352	+
5UTR-3CDS	ENST00000315596	ENST00000589804		TCGA	RV	LUAD	TCGA-50-6591-01A	PDS5B	chr13	33160730	+	CD3EAP	chr19	45910352	+
Frame-shit	ENST00000332830	ENST00000226230		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000332830	ENST00000583381		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000332830	ENST00000582113		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000332830	ENST00000336687		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
Frame-shit	ENST00000577226	ENST00000226230		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000577226	ENST00000583381		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000577226	ENST00000582113		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000577226	ENST00000336687		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
Frame-shit	ENST00000268756	ENST00000226230		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000268756	ENST00000583381		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000268756	ENST00000582113		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5CDS-5UTR	ENST00000268756	ENST00000336687		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
intron-3CDS	ENST00000582655	ENST00000226230		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
intron-5UTR	ENST00000582655	ENST00000583381		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
intron-5UTR	ENST00000582655	ENST00000582113		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
intron-5UTR	ENST00000582655	ENST00000336687		TCGA	RV	LUAD	TCGA-05-4433-01A	PHF12	chr17	27277083	-	TMEM97	chr17	26652529	+
5UTR-3CDS	ENST00000257821	ENST00000298834		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000257821	ENST00000426438		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000257821	ENST00000314845		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000257821	ENST00000533727		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000257821	ENST00000534300		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000257821	ENST00000458649		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000257821	ENST00000528950		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-5UTR	ENST00000257821	ENST00000529963		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000298834		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000426438		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000314845		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000533727		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000534300		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000458649		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000323180	ENST00000528950		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-5UTR	ENST00000323180	ENST00000529963		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000298834		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000426438		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000314845		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000533727		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000534300		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000458649		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000418153	ENST00000528950		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-5UTR	ENST00000418153	ENST00000529963		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000298834		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000426438		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000314845		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000533727		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000534300		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000458649		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-3CDS	ENST00000527753	ENST00000528950		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
intron-5UTR	ENST00000527753	ENST00000529963		TCGA	RV	LUAD	TCGA-91-8499-01A	PHF21A	chr11	46113734	-	AMBRA1	chr11	46515754	-
5UTR-3CDS	ENST00000368874	ENST00000368324		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000368874	ENST00000539162		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
intron-3CDS	ENST00000271657	ENST00000368324		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
intron-5UTR	ENST00000271657	ENST00000539162		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-3CDS	ENST00000368875	ENST00000368324		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000368875	ENST00000539162		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-3CDS	ENST00000368873	ENST00000368324		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000368873	ENST00000539162		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-3CDS	ENST00000529142	ENST00000368324		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000529142	ENST00000539162		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-3CDS	ENST00000368872	ENST00000368324		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000368872	ENST00000539162		TCGA	RV	LUAD	TCGA-86-A4P7-01A	PI4KB	chr1	151299747	-	SYT11	chr1	155850291	+
intron-3CDS	ENST00000471540	ENST00000263816		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
intron-3CDS	ENST00000471540	ENST00000443831		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
intron-intron	ENST00000471540	ENST00000461418		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
Frame-shit	ENST00000349485	ENST00000263816		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
Frame-shit	ENST00000349485	ENST00000443831		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
5CDS-intron	ENST00000349485	ENST00000461418		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
Frame-shit	ENST00000331343	ENST00000263816		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
Frame-shit	ENST00000331343	ENST00000443831		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
5CDS-intron	ENST00000331343	ENST00000461418		TCGA	RV	LUAD	TCGA-64-5779-01A	POFUT2	chr21	46707656	-	LRP2	chr2	170151220	-
Frame-shit	ENST00000234310	ENST00000409559		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
Frame-shit	ENST00000234310	ENST00000263655		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
5CDS-5UTR	ENST00000234310	ENST00000481714		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
5CDS-5UTR	ENST00000234310	ENST00000409862		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
Frame-shit	ENST00000409752	ENST00000409559		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
Frame-shit	ENST00000409752	ENST00000263655		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
5CDS-5UTR	ENST00000409752	ENST00000481714		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
5CDS-5UTR	ENST00000409752	ENST00000409862		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
In-frame	ENST00000409377	ENST00000409559		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
In-frame	ENST00000409377	ENST00000263655		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
5CDS-5UTR	ENST00000409377	ENST00000481714		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
5CDS-5UTR	ENST00000409377	ENST00000409862		TCGA	RV	LUAD	TCGA-55-6972-01A	PPP3R1	chr2	68413600	-	CNRIP1	chr2	68544439	-
Frame-shit	ENST00000369110	ENST00000343245		TCGA	RV	LUAD	TCGA-78-7153-01A	PREP	chr6	105816778	-	ATG5	chr6	106696119	-
Frame-shit	ENST00000369110	ENST00000369070		TCGA	RV	LUAD	TCGA-78-7153-01A	PREP	chr6	105816778	-	ATG5	chr6	106696119	-
Frame-shit	ENST00000369110	ENST00000369076		TCGA	RV	LUAD	TCGA-78-7153-01A	PREP	chr6	105816778	-	ATG5	chr6	106696119	-
In-frame	ENST00000369110	ENST00000360666		TCGA	RV	LUAD	TCGA-78-7153-01A	PREP	chr6	105816778	-	ATG5	chr6	106696119	-
5CDS-intron	ENST00000369110	ENST00000475645		TCGA	RV	LUAD	TCGA-78-7153-01A	PREP	chr6	105816778	-	ATG5	chr6	106696119	-
intron-3UTR	ENST00000271308	ENST00000318789		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000271308	ENST00000475937		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000493089		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000484350		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000318779		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000491238		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000498215		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000468577		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000271308	ENST00000472382		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000538610	ENST00000318789		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000538610	ENST00000475937		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000493089		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000484350		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000318779		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000491238		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000498215		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000468577		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000538610	ENST00000472382		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000490870	ENST00000318789		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000490870	ENST00000475937		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000493089		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000484350		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000318779		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000491238		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000498215		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000468577		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000490870	ENST00000472382		TCGA	RV	LUAD	TCGA-55-6978-01A	PSMA5	chr1	109944470	-	FOXP1	chr3	71007472	-
5UTR-3CDS	ENST00000431726	ENST00000232766		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTPN23	chr3	47437707	+	KLHL18	chr3	47361143	+
5UTR-intron	ENST00000431726	ENST00000455924		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTPN23	chr3	47437707	+	KLHL18	chr3	47361143	+
5UTR-intron	ENST00000431726	ENST00000483201		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTPN23	chr3	47437707	+	KLHL18	chr3	47361143	+
In-frame	ENST00000265562	ENST00000232766		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTPN23	chr3	47437707	+	KLHL18	chr3	47361143	+
5CDS-intron	ENST00000265562	ENST00000455924		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTPN23	chr3	47437707	+	KLHL18	chr3	47361143	+
5CDS-intron	ENST00000265562	ENST00000483201		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTPN23	chr3	47437707	+	KLHL18	chr3	47361143	+
Frame-shit	ENST00000580170	ENST00000256858		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000580170	ENST00000398130		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000580170	ENST00000592479		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000332175	ENST00000256858		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000332175	ENST00000398130		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000332175	ENST00000592479		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000400060	ENST00000256858		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000400060	ENST00000398130		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000400060	ENST00000592479		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000400053	ENST00000256858		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000400053	ENST00000398130		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000400053	ENST00000592479		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000444013	ENST00000256858		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
Frame-shit	ENST00000444013	ENST00000398130		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
5CDS-intron	ENST00000444013	ENST00000592479		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
intron-3CDS	ENST00000578571	ENST00000256858		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
intron-3CDS	ENST00000578571	ENST00000398130		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
intron-intron	ENST00000578571	ENST00000592479		TCGA	RV	LUAD	TCGA-44-A47B-01A	PTPRM	chr18	7955412	+	KIAA1468	chr18	59911997	+
3UTR-5UTR	ENST00000311481	ENST00000216037		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
3UTR-5UTR	ENST00000311481	ENST00000403532		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
3UTR-intron	ENST00000311481	ENST00000405219		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
3UTR-intron	ENST00000311481	ENST00000344347		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
5CDS-5UTR	ENST00000527397	ENST00000216037		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
5CDS-5UTR	ENST00000527397	ENST00000403532		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
5CDS-intron	ENST00000527397	ENST00000405219		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
5CDS-intron	ENST00000527397	ENST00000344347		TCGA	RV	LUAD	TCGA-78-7148-01A	RAB1B	chr11	66044100	+	XBP1	chr22	29196544	-
In-frame	ENST00000262879	ENST00000358864		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
5CDS-intron	ENST00000262879	ENST00000496948		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
In-frame	ENST00000397042	ENST00000358864		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
5CDS-intron	ENST00000397042	ENST00000496948		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
In-frame	ENST00000397038	ENST00000358864		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
5CDS-intron	ENST00000397038	ENST00000496948		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
intron-3CDS	ENST00000537204	ENST00000358864		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
intron-intron	ENST00000537204	ENST00000496948		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
In-frame	ENST00000397040	ENST00000358864		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
5CDS-intron	ENST00000397040	ENST00000496948		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
intron-3CDS	ENST00000490114	ENST00000358864		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
intron-intron	ENST00000490114	ENST00000496948		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	RALGAPB	chr20	37191340	+	TMC2	chr20	2539102	+
Frame-shit	ENST00000317506	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000317506	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000317506	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000317506	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000317506	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000317506	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000317506	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5CDS-5UTR	ENST00000317506	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-3CDS	ENST00000448631	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
intron-5UTR	ENST00000448631	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000536251	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-5UTR	ENST00000536251	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000411657	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5CDS-5UTR	ENST00000411657	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000602677	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5CDS-5UTR	ENST00000602677	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
Frame-shit	ENST00000425512	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5CDS-5UTR	ENST00000425512	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000422611		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000338335		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000316341		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000572037		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000541864		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000576616		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-3CDS	ENST00000602887	ENST00000537830		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
5UTR-5UTR	ENST00000602887	ENST00000572010		TCGA	RV	LUAD	TCGA-MP-A4T4-01A	RANBP10	chr16	67778191	-	SLC12A4	chr16	67986328	-
In-frame	ENST00000317506	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
In-frame	ENST00000317506	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
In-frame	ENST00000448631	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
In-frame	ENST00000448631	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
5UTR-3CDS	ENST00000536251	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
5UTR-3CDS	ENST00000536251	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
intron-3CDS	ENST00000411657	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
intron-3CDS	ENST00000411657	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
In-frame	ENST00000602677	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
In-frame	ENST00000602677	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000425512	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000425512	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
5UTR-3CDS	ENST00000602887	ENST00000219343		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
5UTR-3CDS	ENST00000602887	ENST00000566454		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	RANBP10	chr16	67839331	-	SLC7A6	chr16	68328608	+
5UTR-5UTR	ENST00000379888	ENST00000262120		TCGA	RV	LUAD	TCGA-55-7574-01A	RBM17	chr10	6131156	+	TWSG1	chr18	9337191	+
5UTR-5UTR	ENST00000379888	ENST00000581641		TCGA	RV	LUAD	TCGA-55-7574-01A	RBM17	chr10	6131156	+	TWSG1	chr18	9337191	+
intron-5UTR	ENST00000446108	ENST00000262120		TCGA	RV	LUAD	TCGA-55-7574-01A	RBM17	chr10	6131156	+	TWSG1	chr18	9337191	+
intron-5UTR	ENST00000446108	ENST00000581641		TCGA	RV	LUAD	TCGA-55-7574-01A	RBM17	chr10	6131156	+	TWSG1	chr18	9337191	+
intron-5UTR	ENST00000476706	ENST00000262120		TCGA	RV	LUAD	TCGA-55-7574-01A	RBM17	chr10	6131156	+	TWSG1	chr18	9337191	+
intron-5UTR	ENST00000476706	ENST00000581641		TCGA	RV	LUAD	TCGA-55-7574-01A	RBM17	chr10	6131156	+	TWSG1	chr18	9337191	+
5UTR-5UTR	ENST00000319592	ENST00000295974		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000319592	ENST00000513140		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000319592	ENST00000508593		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000319592	ENST00000506352		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000319592	ENST00000511572		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000319592	ENST00000543538		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000319592	ENST00000502841		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000319592	ENST00000504305		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381793	ENST00000295974		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381793	ENST00000513140		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381793	ENST00000508593		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381793	ENST00000506352		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381793	ENST00000511572		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000381793	ENST00000543538		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000381793	ENST00000502841		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000381793	ENST00000504305		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381795	ENST00000295974		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381795	ENST00000513140		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381795	ENST00000508593		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381795	ENST00000506352		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000381795	ENST00000511572		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000381795	ENST00000543538		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000381795	ENST00000502841		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000381795	ENST00000504305		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000295971	ENST00000295974		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000295971	ENST00000513140		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000295971	ENST00000508593		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000295971	ENST00000506352		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000295971	ENST00000511572		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000295971	ENST00000543538		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000295971	ENST00000502841		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000295971	ENST00000504305		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000514014	ENST00000295974		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000514014	ENST00000513140		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000514014	ENST00000508593		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000514014	ENST00000506352		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-5UTR	ENST00000514014	ENST00000511572		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000514014	ENST00000543538		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000514014	ENST00000502841		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
5UTR-intron	ENST00000514014	ENST00000504305		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515809	ENST00000295974		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515809	ENST00000513140		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515809	ENST00000508593		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515809	ENST00000506352		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000515809	ENST00000511572		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000515809	ENST00000543538		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000515809	ENST00000502841		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-intron	ENST00000515809	ENST00000504305		TCGA	RV	LUAD	TCGA-44-A479-01A	RBM47	chr4	40546439	-	APBB2	chr4	41102767	-
intron-3CDS	ENST00000382363	ENST00000609686		TCGA	RV	LUAD	TCGA-44-7669-01A	RNF215	chr22	30817650	-	GRIN2B	chr12	13906849	-
5UTR-3CDS	ENST00000345093	ENST00000338193		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
5UTR-5UTR	ENST00000345093	ENST00000552408		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
5UTR-3CDS	ENST00000394013	ENST00000338193		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
5UTR-5UTR	ENST00000394013	ENST00000552408		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
intron-3CDS	ENST00000552656	ENST00000338193		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
intron-5UTR	ENST00000552656	ENST00000552408		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
5UTR-3CDS	ENST00000552244	ENST00000338193		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
5UTR-5UTR	ENST00000552244	ENST00000552408		TCGA	RV	LUAD	TCGA-55-8301-01A	RNF41	chr12	56615544	-	PRIM1	chr12	57144979	-
In-frame	ENST00000315872	ENST00000496972		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000405222		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000407661		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000406818		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000407038		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000404103		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000407186		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000288642		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
In-frame	ENST00000315872	ENST00000545439		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
5CDS-intron	ENST00000315872	ENST00000472690		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000496972		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000405222		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000407661		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000406818		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000407038		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000404103		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000407186		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000288642		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000462366	ENST00000545439		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-intron	ENST00000462366	ENST00000472690		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000496972		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000405222		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000407661		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000406818		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000407038		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000404103		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000407186		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000288642		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-3CDS	ENST00000401753	ENST00000545439		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
intron-intron	ENST00000401753	ENST00000472690		TCGA	RV	LUAD	TCGA-67-3770-01A	ROCK2	chr2	11484122	-	DTNB	chr2	25656864	-
5CDS-intron	ENST00000529163	ENST00000556679		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000456570		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000477310		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000425368		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000497841		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000417261		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000427888		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000459734		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000455591		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000433503		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000474621		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000424727		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000436692		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000473139		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000399981		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000419920		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000465211		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000375455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000489605		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000426239		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000419411		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000529163	ENST00000460958		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000556679		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000456570		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000477310		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000425368		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000497841		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000417261		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000427888		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000459734		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000455591		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000433503		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000474621		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000424727		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000436692		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000473139		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000399981		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000419920		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000465211		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000375455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000489605		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000426239		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000419411		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000394920	ENST00000460958		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000556679		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000456570		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000477310		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000425368		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000497841		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000417261		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000427888		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000459734		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000455591		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000433503		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000474621		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000424727		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000436692		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000473139		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000399981		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000419920		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000465211		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000375455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000489605		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000426239		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000419411		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000527914	ENST00000460958		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000556679		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000456570		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000477310		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000425368		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000497841		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000417261		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000427888		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000459734		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000455591		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000433503		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000474621		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000424727		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000436692		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000473139		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000399981		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000419920		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000465211		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000375455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000489605		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000426239		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000419411		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000262584	ENST00000460958		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000556679		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000456570		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000477310		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000425368		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000497841		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000417261		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000427888		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000459734		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000455591		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000433503		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000474621		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000424727		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000436692		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000473139		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000399981		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000419920		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000465211		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000375455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000489605		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000426239		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000419411		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
intron-intron	ENST00000528957	ENST00000460958		TCGA	RV	LUAD	TCGA-95-A4VN-01A	RPL8	chr8	146015155	-	CFB	chr6	31913427	+
Frame-shit	ENST00000256190	ENST00000282096		TCGA	RV	LUAD	TCGA-55-A491-01A	SBF2	chr11	10049999	-	PDE3B	chr11	14793483	+
Frame-shit	ENST00000256190	ENST00000455098		TCGA	RV	LUAD	TCGA-55-A491-01A	SBF2	chr11	10049999	-	PDE3B	chr11	14793483	+
5CDS-3UTR	ENST00000256190	ENST00000534317		TCGA	RV	LUAD	TCGA-55-A491-01A	SBF2	chr11	10049999	-	PDE3B	chr11	14793483	+
5UTR-3CDS	ENST00000527019	ENST00000282096		TCGA	RV	LUAD	TCGA-55-A491-01A	SBF2	chr11	10049999	-	PDE3B	chr11	14793483	+
5UTR-3CDS	ENST00000527019	ENST00000455098		TCGA	RV	LUAD	TCGA-55-A491-01A	SBF2	chr11	10049999	-	PDE3B	chr11	14793483	+
5UTR-3UTR	ENST00000527019	ENST00000534317		TCGA	RV	LUAD	TCGA-55-A491-01A	SBF2	chr11	10049999	-	PDE3B	chr11	14793483	+
Frame-shit	ENST00000292641	ENST00000338252		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
In-frame	ENST00000292641	ENST00000508830		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000359176		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000395812		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000325674		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000395813		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000510756		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000508608		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000341926		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000511049		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000309190		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000509903		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000511782		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000504465		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000348386		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000508579		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
5CDS-intron	ENST00000292641	ENST00000515663		TCGA	RV	LUAD	TCGA-78-7163-01A	SCGB3A1	chr5	180017103	-	CAST	chr5	95997778	+
intron-3CDS	ENST00000545472	ENST00000265593		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-3CDS	ENST00000545472	ENST00000344937		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-5UTR	ENST00000545472	ENST00000423355		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-5UTR	ENST00000545472	ENST00000434054		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-5UTR	ENST00000545472	ENST00000457512		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-intron	ENST00000545472	ENST00000475279		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
Frame-shit	ENST00000296257	ENST00000265593		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
Frame-shit	ENST00000296257	ENST00000344937		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5CDS-5UTR	ENST00000296257	ENST00000423355		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5CDS-5UTR	ENST00000296257	ENST00000434054		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5CDS-5UTR	ENST00000296257	ENST00000457512		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5CDS-intron	ENST00000296257	ENST00000475279		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5UTR-3CDS	ENST00000427465	ENST00000265593		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5UTR-3CDS	ENST00000427465	ENST00000344937		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5UTR-5UTR	ENST00000427465	ENST00000423355		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5UTR-5UTR	ENST00000427465	ENST00000434054		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5UTR-5UTR	ENST00000427465	ENST00000457512		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5UTR-intron	ENST00000427465	ENST00000475279		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-3CDS	ENST00000465201	ENST00000265593		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-3CDS	ENST00000465201	ENST00000344937		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-5UTR	ENST00000465201	ENST00000423355		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-5UTR	ENST00000465201	ENST00000434054		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-5UTR	ENST00000465201	ENST00000457512		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
intron-intron	ENST00000465201	ENST00000475279		TCGA	RV	LUAD	TCGA-91-8499-01A	SENP2	chr3	185304302	+	CLCN2	chr3	184076919	-
5CDS-5UTR	ENST00000271640	ENST00000369126		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000271640	ENST00000025469		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000271640	ENST00000369124		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-3UTR	ENST00000271640	ENST00000479194		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368962	ENST00000369126		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368962	ENST00000025469		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368962	ENST00000369124		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-3UTR	ENST00000368962	ENST00000479194		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368969	ENST00000369126		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368969	ENST00000025469		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368969	ENST00000369124		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-3UTR	ENST00000368969	ENST00000479194		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368963	ENST00000369126		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368963	ENST00000025469		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-5UTR	ENST00000368963	ENST00000369124		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
5CDS-3UTR	ENST00000368963	ENST00000479194		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
3UTR-5UTR	ENST00000459773	ENST00000369126		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
3UTR-5UTR	ENST00000459773	ENST00000025469		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
3UTR-5UTR	ENST00000459773	ENST00000369124		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
3UTR-3UTR	ENST00000459773	ENST00000479194		TCGA	RV	LUAD	TCGA-86-8672-01A	SETDB1	chr1	150902594	+	PLEKHO1	chr1	150128260	+
Frame-shit	ENST00000302035	ENST00000289429		TCGA	RV	LUAD	TCGA-55-7573-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000235739	ENST00000289429		TCGA	RV	LUAD	TCGA-55-7573-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000538290	ENST00000289429		TCGA	RV	LUAD	TCGA-55-7573-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000355199	ENST00000289429		TCGA	RV	LUAD	TCGA-55-7573-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
In-frame	ENST00000302035	ENST00000289429		TCGA	RV	LUAD	TCGA-86-7953-01A	SLAMF1	chr1	160604403	-	CD1A	chr1	158224874	+
In-frame	ENST00000235739	ENST00000289429		TCGA	RV	LUAD	TCGA-86-7953-01A	SLAMF1	chr1	160604403	-	CD1A	chr1	158224874	+
In-frame	ENST00000538290	ENST00000289429		TCGA	RV	LUAD	TCGA-86-7953-01A	SLAMF1	chr1	160604403	-	CD1A	chr1	158224874	+
In-frame	ENST00000355199	ENST00000289429		TCGA	RV	LUAD	TCGA-86-7953-01A	SLAMF1	chr1	160604403	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000302035	ENST00000368170		TCGA	RV	LUAD	TCGA-55-8619-01A	SLAMF1	chr1	160616660	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000235739	ENST00000368170		TCGA	RV	LUAD	TCGA-55-8619-01A	SLAMF1	chr1	160616660	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000538290	ENST00000368170		TCGA	RV	LUAD	TCGA-55-8619-01A	SLAMF1	chr1	160616660	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000355199	ENST00000368170		TCGA	RV	LUAD	TCGA-55-8619-01A	SLAMF1	chr1	160616660	-	CD1C	chr1	158260924	+
5CDS-5UTR	ENST00000369755	ENST00000268489		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000369755	ENST00000397992		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000369755	ENST00000558842		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
5CDS-5UTR	ENST00000335753	ENST00000268489		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000335753	ENST00000397992		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
5CDS-intron	ENST00000335753	ENST00000558842		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
intron-5UTR	ENST00000474260	ENST00000268489		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
intron-intron	ENST00000474260	ENST00000397992		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
intron-intron	ENST00000474260	ENST00000558842		TCGA	RV	LUAD	TCGA-64-5779-01A	SLK	chr10	105727653	+	ZFHX3	chr16	72994093	-
In-frame	ENST00000336278	ENST00000314423		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
In-frame	ENST00000336278	ENST00000352319		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
In-frame	ENST00000336278	ENST00000563094		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
5CDS-3UTR	ENST00000336278	ENST00000569615		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
3UTR-3CDS	ENST00000528525	ENST00000314423		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
3UTR-3CDS	ENST00000528525	ENST00000352319		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
3UTR-3CDS	ENST00000528525	ENST00000563094		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
3UTR-3UTR	ENST00000528525	ENST00000569615		TCGA	RV	LUAD	TCGA-35-4122-01A	SNTB2	chr16	69221649	+	CIRH1A	chr16	69177081	+
In-frame	ENST00000343017	ENST00000341048		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
In-frame	ENST00000343017	ENST00000504958		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000343017	ENST00000505970		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-5UTR	ENST00000343017	ENST00000513241		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000343017	ENST00000434982		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
Frame-shit	ENST00000326277	ENST00000341048		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
Frame-shit	ENST00000326277	ENST00000504958		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000326277	ENST00000505970		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-5UTR	ENST00000326277	ENST00000513241		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000326277	ENST00000434982		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
In-frame	ENST00000381410	ENST00000341048		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
In-frame	ENST00000381410	ENST00000504958		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000381410	ENST00000505970		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-5UTR	ENST00000381410	ENST00000513241		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5CDS-intron	ENST00000381410	ENST00000434982		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	SNX18	chr5	53815403	+	ANKRD55	chr5	55479461	-
5UTR-3CDS	ENST00000376929	ENST00000285900		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
5UTR-3CDS	ENST00000376929	ENST00000518142		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
5UTR-3CDS	ENST00000376929	ENST00000340592		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
5UTR-3CDS	ENST00000376929	ENST00000521843		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
5UTR-3CDS	ENST00000376929	ENST00000448073		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
5UTR-3CDS	ENST00000376929	ENST00000518783		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
5UTR-intron	ENST00000376929	ENST00000518862		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000506690	ENST00000285900		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000506690	ENST00000518142		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000506690	ENST00000340592		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000506690	ENST00000521843		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000506690	ENST00000448073		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000506690	ENST00000518783		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-intron	ENST00000506690	ENST00000518862		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000389805	ENST00000285900		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000389805	ENST00000518142		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000389805	ENST00000340592		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000389805	ENST00000521843		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000389805	ENST00000448073		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000389805	ENST00000518783		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-intron	ENST00000389805	ENST00000518862		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000402874	ENST00000285900		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000402874	ENST00000518142		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000402874	ENST00000340592		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000402874	ENST00000521843		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000402874	ENST00000448073		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000402874	ENST00000518783		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-intron	ENST00000402874	ENST00000518862		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000510187	ENST00000285900		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000510187	ENST00000518142		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000510187	ENST00000340592		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000510187	ENST00000521843		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000510187	ENST00000448073		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000510187	ENST00000518783		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-intron	ENST00000510187	ENST00000518862		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000360718	ENST00000285900		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000360718	ENST00000518142		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000360718	ENST00000340592		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000360718	ENST00000521843		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000360718	ENST00000448073		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-3CDS	ENST00000360718	ENST00000518783		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
intron-intron	ENST00000360718	ENST00000518862		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SQSTM1	chr5	179233591	+	GRIA1	chr5	153077604	+
In-frame	ENST00000393651	ENST00000447467		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
In-frame	ENST00000393651	ENST00000324972		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
In-frame	ENST00000393651	ENST00000537881		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
In-frame	ENST00000393651	ENST00000437599		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
In-frame	ENST00000393651	ENST00000359388		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
5CDS-intron	ENST00000393651	ENST00000413338		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
5CDS-intron	ENST00000393651	ENST00000457059		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
5CDS-intron	ENST00000393651	ENST00000497626		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000357311	ENST00000447467		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000357311	ENST00000324972		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000357311	ENST00000537881		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000357311	ENST00000437599		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000357311	ENST00000359388		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000357311	ENST00000413338		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000357311	ENST00000457059		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000357311	ENST00000497626		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000489828	ENST00000447467		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000489828	ENST00000324972		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000489828	ENST00000537881		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000489828	ENST00000437599		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000489828	ENST00000359388		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000489828	ENST00000413338		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000489828	ENST00000457059		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000489828	ENST00000497626		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000493638	ENST00000447467		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000493638	ENST00000324972		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000493638	ENST00000537881		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000493638	ENST00000437599		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-3CDS	ENST00000493638	ENST00000359388		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000493638	ENST00000413338		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000493638	ENST00000457059		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
intron-intron	ENST00000493638	ENST00000497626		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	SRPK2	chr7	105029095	-	DYNC1I1	chr7	95499195	+
In-frame	ENST00000345506	ENST00000544915		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000345506	ENST00000395901		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000345506	ENST00000546179		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000345506	ENST00000311001		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000345506	ENST00000261178		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000345506	ENST00000266503		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000345506	ENST00000539558		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000345506	ENST00000542388		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000590949	ENST00000544915		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000590949	ENST00000395901		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000590949	ENST00000546179		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000590949	ENST00000311001		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000590949	ENST00000261178		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000590949	ENST00000266503		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000590949	ENST00000539558		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000590949	ENST00000542388		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000546010	ENST00000544915		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000546010	ENST00000395901		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000546010	ENST00000546179		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000546010	ENST00000311001		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000546010	ENST00000261178		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000546010	ENST00000266503		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000546010	ENST00000539558		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000546010	ENST00000542388		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000452307	ENST00000544915		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000452307	ENST00000395901		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000452307	ENST00000546179		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000452307	ENST00000311001		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000452307	ENST00000261178		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000452307	ENST00000266503		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000452307	ENST00000539558		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000452307	ENST00000542388		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000588868	ENST00000544915		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000588868	ENST00000395901		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000588868	ENST00000546179		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000588868	ENST00000311001		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000588868	ENST00000261178		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
In-frame	ENST00000588868	ENST00000266503		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000588868	ENST00000539558		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
5CDS-intron	ENST00000588868	ENST00000542388		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-3CDS	ENST00000587646	ENST00000544915		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-3CDS	ENST00000587646	ENST00000395901		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-3CDS	ENST00000587646	ENST00000546179		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-3CDS	ENST00000587646	ENST00000311001		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-3CDS	ENST00000587646	ENST00000261178		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-3CDS	ENST00000587646	ENST00000266503		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-intron	ENST00000587646	ENST00000539558		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
intron-intron	ENST00000587646	ENST00000542388		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	STAT5A	chr17	40447811	+	ARNTL2	chr12	27538414	+
Frame-shit	ENST00000339208	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
Frame-shit	ENST00000346661	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
Frame-shit	ENST00000345615	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
Frame-shit	ENST00000502449	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
Frame-shit	ENST00000591288	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
Frame-shit	ENST00000394378	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
Frame-shit	ENST00000585472	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
5UTR-3CDS	ENST00000588194	ENST00000007735		TCGA	RV	LUAD	TCGA-55-1592-01A	SYNRG	chr17	35936439	-	KRT33A	chr17	39505680	-
In-frame	ENST00000337137	ENST00000377938		TCGA	RV	LUAD	TCGA-49-4514-01A	TBC1D22A	chr22	47274619	+	GKN1	chr2	69204627	+
In-frame	ENST00000380995	ENST00000377938		TCGA	RV	LUAD	TCGA-49-4514-01A	TBC1D22A	chr22	47274619	+	GKN1	chr2	69204627	+
In-frame	ENST00000407381	ENST00000377938		TCGA	RV	LUAD	TCGA-49-4514-01A	TBC1D22A	chr22	47274619	+	GKN1	chr2	69204627	+
In-frame	ENST00000355704	ENST00000377938		TCGA	RV	LUAD	TCGA-49-4514-01A	TBC1D22A	chr22	47274619	+	GKN1	chr2	69204627	+
intron-3CDS	ENST00000472791	ENST00000377938		TCGA	RV	LUAD	TCGA-49-4514-01A	TBC1D22A	chr22	47274619	+	GKN1	chr2	69204627	+
In-frame	ENST00000406733	ENST00000377938		TCGA	RV	LUAD	TCGA-49-4514-01A	TBC1D22A	chr22	47274619	+	GKN1	chr2	69204627	+
intron-3CDS	ENST00000514529	ENST00000305124		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
intron-3CDS	ENST00000514529	ENST00000393780		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000321871	ENST00000305124		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000321871	ENST00000393780		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000393130	ENST00000305124		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000393130	ENST00000393780		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000508711	ENST00000305124		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000508711	ENST00000393780		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000515826	ENST00000305124		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000515826	ENST00000393780		TCGA	RV	LUAD	TCGA-55-6985-01A	TMEM108	chr3	132948195	+	GAP43	chr3	115394860	+
Frame-shit	ENST00000409528	ENST00000504830		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
Frame-shit	ENST00000409528	ENST00000352040		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000409528	ENST00000504582		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000409528	ENST00000515401		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
Frame-shit	ENST00000409173	ENST00000504830		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
Frame-shit	ENST00000409173	ENST00000352040		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000409173	ENST00000504582		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000409173	ENST00000515401		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
Frame-shit	ENST00000412401	ENST00000504830		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
Frame-shit	ENST00000412401	ENST00000352040		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000412401	ENST00000504582		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
5CDS-5UTR	ENST00000412401	ENST00000515401		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
3UTR-3CDS	ENST00000486293	ENST00000504830		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
3UTR-3CDS	ENST00000486293	ENST00000352040		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
3UTR-5UTR	ENST00000486293	ENST00000504582		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
3UTR-5UTR	ENST00000486293	ENST00000515401		TCGA	RV	LUAD	TCGA-93-8067-01A	TMEM182	chr2	103414459	+	ADAMTS12	chr5	33751653	-
intron-intron	ENST00000535648	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000535648	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000535648	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000535648	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000346706	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000346706	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000346706	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000346706	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000340094	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000340094	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000340094	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000340094	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000345230	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000345230	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000345230	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000345230	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000350763	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000350763	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000350763	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000350763	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
5CDS-intron	ENST00000341037	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
5CDS-intron	ENST00000341037	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
5CDS-intron	ENST00000341037	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
5CDS-intron	ENST00000341037	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000423613	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000423613	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000423613	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000423613	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000537320	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000537320	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000537320	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000537320	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000542877	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000542877	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000542877	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000542877	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000481475	ENST00000264012		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000481475	ENST00000429102		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000481475	ENST00000581171		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-intron	ENST00000481475	ENST00000569117		TCGA	RV	LUAD	TCGA-50-6595-01A	TNC	chr9	117782839	-	CDH3	chr16	68678151	+
intron-5UTR	ENST00000369996	ENST00000377795		TCGA	RV	LUAD	TCGA-55-A493-01A	TNFRSF6B	chr20	62322300	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000369996	ENST00000353334		TCGA	RV	LUAD	TCGA-55-A493-01A	TNFRSF6B	chr20	62322300	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000369996	ENST00000524315		TCGA	RV	LUAD	TCGA-55-A493-01A	TNFRSF6B	chr20	62322300	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000369996	ENST00000009530		TCGA	RV	LUAD	TCGA-55-A493-01A	TNFRSF6B	chr20	62322300	+	CD74	chr5	149792314	-
5UTR-3CDS	ENST00000541110	ENST00000376059		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000376049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000414149		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000419376		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000425748		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000416422		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000413349		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000415830		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000383474		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000488491		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000383473		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000440907		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000549432		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000541110	ENST00000424944		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-3CDS	ENST00000372917	ENST00000376059		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000376049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000414149		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000419376		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000425748		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000416422		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000413349		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000415830		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000383474		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000488491		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000383473		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000440907		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000549432		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372917	ENST00000424944		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-3CDS	ENST00000372922	ENST00000376059		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000376049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000414149		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000419376		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000425748		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000416422		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000413349		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000415830		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000383474		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000488491		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000383473		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000440907		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000549432		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000372922	ENST00000424944		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-3CDS	ENST00000340840	ENST00000376059		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000376049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000414149		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000419376		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000425748		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000416422		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000413349		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000415830		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000383474		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000488491		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000383473		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000440907		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000549432		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000340840	ENST00000424944		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-3CDS	ENST00000354325	ENST00000376059		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000376049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000414149		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000419376		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000425748		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000416422		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000413349		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000415830		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000383474		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000488491		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000383473		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000440907		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000549432		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
5UTR-intron	ENST00000354325	ENST00000424944		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TRERF1	chr6	42268376	-	AIF1	chr6	31583298	+
In-frame	ENST00000334379	ENST00000368851		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
In-frame	ENST00000334379	ENST00000368850		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
5CDS-intron	ENST00000334379	ENST00000465319		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
In-frame	ENST00000368332	ENST00000368851		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
In-frame	ENST00000368332	ENST00000368850		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
5CDS-intron	ENST00000368332	ENST00000465319		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
In-frame	ENST00000450358	ENST00000368851		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
In-frame	ENST00000450358	ENST00000368850		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
5CDS-intron	ENST00000450358	ENST00000465319		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
3UTR-3CDS	ENST00000489934	ENST00000368851		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
3UTR-3CDS	ENST00000489934	ENST00000368850		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
3UTR-intron	ENST00000489934	ENST00000465319		TCGA	RV	LUAD	TCGA-78-7220-01A	TRMT11	chr6	126314968	+	SLC16A10	chr6	111527795	+
5UTR-3CDS	ENST00000337702	ENST00000455756		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000337702	ENST00000418177		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000337702	ENST00000305447		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000337702	ENST00000305432		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-intron	ENST00000337702	ENST00000393297		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-intron	ENST00000337702	ENST00000393294		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000503936	ENST00000455756		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000503936	ENST00000418177		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000503936	ENST00000305447		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000503936	ENST00000305432		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-intron	ENST00000503936	ENST00000393297		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5UTR-intron	ENST00000503936	ENST00000393294		TCGA	RV	LUAD	TCGA-91-6831-01A	TTC33	chr5	40755926	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000375990	ENST00000354817		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000375990	ENST00000527202		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000375990	ENST00000532502		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000259253	ENST00000354817		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000259253	ENST00000527202		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000259253	ENST00000532502		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
intron-intron	ENST00000465836	ENST00000354817		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
intron-intron	ENST00000465836	ENST00000527202		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
intron-intron	ENST00000465836	ENST00000532502		TCGA	RV	LUAD	TCGA-50-6673-01A	UGGT1	chr2	128953247	+	FAR1	chr11	13744912	+
In-frame	ENST00000249837	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000249837	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000249837	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000261517	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000261517	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000261517	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000395896	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000395896	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000395896	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000395898	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
In-frame	ENST00000395898	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000395898	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
intron-3CDS	ENST00000558919	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
intron-3CDS	ENST00000558919	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
intron-intron	ENST00000558919	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	VPS13C	chr15	62199463	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000369426	ENST00000398309		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000376104		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000418306		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000280241		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000543673		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000376106		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000330014		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000537455		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000524982		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000532653		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000531015		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000398301		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000426717		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000404783		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000398304		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000530800		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000369426	ENST00000472545		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000398309		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000376104		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000418306		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000280241		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000543673		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000376106		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000330014		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000537455		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000524982		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000532653		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000531015		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000398301		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000426717		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000404783		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000398304		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000530800		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5CDS-intron	ENST00000235521	ENST00000472545		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000398309		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000376104		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000418306		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000280241		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000543673		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000376106		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000330014		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000537455		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000524982		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000532653		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000531015		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000398301		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000426717		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000404783		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000398304		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000530800		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
intron-intron	ENST00000537870	ENST00000472545		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000398309		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000376104		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000418306		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000280241		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000543673		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000376106		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000330014		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000537455		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000524982		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000532653		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000531015		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000398301		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000426717		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000404783		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000398304		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000530800		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-intron	ENST00000497761	ENST00000472545		TCGA	RV	LUAD	TCGA-55-A490-01A	WARS2	chr1	119683178	-	DLG2	chr11	84865695	-
5UTR-3CDS	ENST00000317025	ENST00000425967		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000397091		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000447712		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000341462		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000532791		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000397113		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000356207		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000335922		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000326324		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000317025	ENST00000397103		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000317025	ENST00000397108		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000317025	ENST00000496629		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000433384	ENST00000425967		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000397091		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000447712		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000341462		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000532791		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000397113		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000356207		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000335922		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000326324		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000433384	ENST00000397103		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000433384	ENST00000397108		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000433384	ENST00000496629		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000527502	ENST00000425967		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000397091		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000447712		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000341462		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000532791		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000397113		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000356207		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000335922		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000326324		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000527502	ENST00000397103		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000527502	ENST00000397108		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000527502	ENST00000496629		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-3CDS	ENST00000316985	ENST00000425967		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000397091		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000447712		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000341462		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000532791		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000397113		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000356207		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000335922		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000326324		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000316985	ENST00000397103		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-5UTR	ENST00000316985	ENST00000397108		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
5UTR-intron	ENST00000316985	ENST00000496629		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-3CDS	ENST00000525081	ENST00000425967		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000397091		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000447712		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000341462		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000532791		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000397113		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000356207		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000335922		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000326324		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-intron	ENST00000525081	ENST00000397103		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-5UTR	ENST00000525081	ENST00000397108		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
intron-intron	ENST00000525081	ENST00000496629		TCGA	RV	LUAD	TCGA-44-4112-01A	WHSC1L1	chr8	38239317	-	FGFR1	chr8	38315052	-
3UTR-5UTR	ENST00000494757	ENST00000335793		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
3UTR-5UTR	ENST00000494757	ENST00000439510		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
3UTR-5UTR	ENST00000494757	ENST00000581014		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
3UTR-intron	ENST00000494757	ENST00000582303		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000323571	ENST00000335793		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000323571	ENST00000439510		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000323571	ENST00000581014		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000323571	ENST00000582303		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000585043	ENST00000335793		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000585043	ENST00000439510		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000585043	ENST00000581014		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000585043	ENST00000582303		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000394103	ENST00000335793		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000394103	ENST00000439510		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000394103	ENST00000581014		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000394103	ENST00000582303		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000536600	ENST00000335793		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000536600	ENST00000439510		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000536600	ENST00000581014		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000536600	ENST00000582303		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583130	ENST00000335793		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583130	ENST00000439510		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583130	ENST00000581014		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000583130	ENST00000582303		TCGA	RV	LUAD	TCGA-44-A47B-01A	WIPF2	chr17	38375744	+	CDC42EP4	chr17	71282751	-
Frame-shit	ENST00000535572	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000535572	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000537687	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000537687	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000315939	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000315939	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000447667	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000447667	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000530271	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000530271	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000540360	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
intron-intron	ENST00000540360	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000340908	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
intron-intron	ENST00000340908	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000574564	ENST00000266383		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
intron-intron	ENST00000574564	ENST00000544638		TCGA	RV	LUAD	TCGA-91-7771-01A	WNK1	chr12	863490	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000535572	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000535572	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000535572	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000535572	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000535572	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000537687	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000537687	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000537687	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000537687	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000537687	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000315939	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000315939	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000315939	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000315939	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000315939	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000447667	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000447667	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000447667	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000447667	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000447667	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000530271	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
Frame-shit	ENST00000530271	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000530271	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000530271	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
5CDS-3UTR	ENST00000530271	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3CDS	ENST00000540360	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3CDS	ENST00000540360	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000540360	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000540360	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000540360	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3CDS	ENST00000340908	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3CDS	ENST00000340908	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000340908	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000340908	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000340908	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3CDS	ENST00000574564	ENST00000540180		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3CDS	ENST00000574564	ENST00000422000		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000574564	ENST00000540344		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000574564	ENST00000239830		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-3UTR	ENST00000574564	ENST00000412006		TCGA	RV	LUAD	TCGA-78-7159-01A	WNK1	chr12	863490	+	CCDC77	chr12	541032	+
intron-5UTR	ENST00000333781	ENST00000328656		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000333781	ENST00000398938		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000333781	ENST00000398932		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000333781	ENST00000398930		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000333781	ENST00000398934		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000541890	ENST00000328656		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000541890	ENST00000398938		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000541890	ENST00000398932		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000541890	ENST00000398930		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000541890	ENST00000398934		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000398753	ENST00000328656		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000398753	ENST00000398938		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000398753	ENST00000398932		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000398753	ENST00000398930		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000398753	ENST00000398934		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000380708	ENST00000328656		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000380708	ENST00000398938		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000380708	ENST00000398932		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000380708	ENST00000398930		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000380708	ENST00000398934		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000466787	ENST00000328656		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000466787	ENST00000398938		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000466787	ENST00000398932		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000466787	ENST00000398930		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
intron-5UTR	ENST00000466787	ENST00000398934		TCGA	RV	LUAD	TCGA-50-5944-01A	WRB	chr21	40782863	+	KCNJ15	chr21	39668848	+
In-frame	ENST00000315436	ENST00000229043		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000315436	ENST00000454402		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000315436	ENST00000392542		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5CDS-3UTR	ENST00000315436	ENST00000543153		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3CDS	ENST00000542304	ENST00000229043		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3CDS	ENST00000542304	ENST00000454402		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3CDS	ENST00000542304	ENST00000392542		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3UTR	ENST00000542304	ENST00000543153		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000441406	ENST00000229043		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000441406	ENST00000454402		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000441406	ENST00000392542		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5CDS-3UTR	ENST00000441406	ENST00000543153		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
intron-3CDS	ENST00000544233	ENST00000229043		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
intron-3CDS	ENST00000544233	ENST00000454402		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
intron-3CDS	ENST00000544233	ENST00000392542		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
intron-3UTR	ENST00000544233	ENST00000543153		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000535496	ENST00000229043		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000535496	ENST00000454402		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
In-frame	ENST00000535496	ENST00000392542		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5CDS-3UTR	ENST00000535496	ENST00000543153		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3CDS	ENST00000536738	ENST00000229043		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3CDS	ENST00000536738	ENST00000454402		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3CDS	ENST00000536738	ENST00000392542		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5UTR-3UTR	ENST00000536738	ENST00000543153		TCGA	RV	LUAD	TCGA-91-7771-01A	WSB2	chr12	118480646	-	RFC5	chr12	118467576	+
5CDS-5UTR	ENST00000242848	ENST00000498078		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000242848	ENST00000323563		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
intron-5UTR	ENST00000378921	ENST00000498078		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
intron-5UTR	ENST00000378921	ENST00000323563		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000282007	ENST00000498078		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
5CDS-5UTR	ENST00000282007	ENST00000323563		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
intron-5UTR	ENST00000470308	ENST00000498078		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
intron-5UTR	ENST00000470308	ENST00000323563		TCGA	RV	LUAD	TCGA-49-AAR0-01A	ZC3H13	chr13	46553948	-	MRPS31	chr13	41303737	-
In-frame	ENST00000383744	ENST00000344293		TCGA	RV	LUAD	TCGA-69-7761-01A	ZNF197	chr3	44674091	+	TAF3	chr10	8005883	+
In-frame	ENST00000344387	ENST00000344293		TCGA	RV	LUAD	TCGA-69-7761-01A	ZNF197	chr3	44674091	+	TAF3	chr10	8005883	+
In-frame	ENST00000383745	ENST00000344293		TCGA	RV	LUAD	TCGA-69-7761-01A	ZNF197	chr3	44674091	+	TAF3	chr10	8005883	+
In-frame	ENST00000396058	ENST00000344293		TCGA	RV	LUAD	TCGA-69-7761-01A	ZNF197	chr3	44674091	+	TAF3	chr10	8005883	+
5CDS-intron	ENST00000263095	ENST00000296306		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000310340		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000453061		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000504346		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000383028		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000536264		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000502311		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000503111		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000263095	ENST00000509768		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000296306		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000310340		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000453061		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000504346		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000383028		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000536264		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000502311		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000503111		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000600531	ENST00000509768		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000296306		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000310340		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000453061		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000504346		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000383028		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000536264		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000502311		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000503111		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000599653	ENST00000509768		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000296306		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000310340		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000453061		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000504346		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000383028		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000536264		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000502311		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000503111		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
5CDS-intron	ENST00000536056	ENST00000509768		TCGA	RV	LUAD	TCGA-50-5930-01A	ZNF264	chr19	57705369	+	PIGG	chr4	514845	+
intron-5UTR	ENST00000590798	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
intron-5UTR	ENST00000538752	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
intron-5UTR	ENST00000591944	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
5CDS-5UTR	ENST00000592625	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
5UTR-5UTR	ENST00000545530	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
5CDS-5UTR	ENST00000343949	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
5CDS-5UTR	ENST00000358987	ENST00000379211		TCGA	RV	LUAD	TCGA-73-A9RS-01A	ZNF763	chr19	12076026	+	CXorf58	chrX	23928400	+
Frame-shit	ENST00000243903	ENST00000373433		TCGA	RV	LUAD	TCGA-91-6828-01A	ACTR5	chr20	37396239	+	RPRD1B	chr20	36718128	+
5CDS-3UTR	ENST00000243903	ENST00000471511		TCGA	RV	LUAD	TCGA-91-6828-01A	ACTR5	chr20	37396239	+	RPRD1B	chr20	36718128	+
5CDS-intron	ENST00000487273	ENST00000519416		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000520615		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000443286		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000520340		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-5UTR	ENST00000487273	ENST00000518415		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000522752		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000348567		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000330691		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000317827		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000379931		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000276520		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000520973		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000487273	ENST00000520611		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000519416		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000520615		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000443286		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000520340		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-5UTR	ENST00000466936	ENST00000518415		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000522752		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000348567		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000330691		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000317827		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000379931		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000276520		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000520973		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000466936	ENST00000520611		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000519416		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000520615		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000443286		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000520340		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-5UTR	ENST00000481513	ENST00000518415		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000522752		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000348567		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000330691		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000317827		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000379931		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000276520		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000520973		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
5CDS-intron	ENST00000481513	ENST00000520611		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000519416		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000520615		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000443286		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000520340		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-5UTR	ENST00000484143	ENST00000518415		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000522752		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000348567		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000330691		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000317827		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000379931		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000276520		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000520973		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
intron-intron	ENST00000484143	ENST00000520611		TCGA	RV	LUAD	TCGA-44-7660-01A	ADAM9	chr8	38865502	+	TACC1	chr8	38602413	+
Frame-shit	ENST00000295903	ENST00000256509		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
In-frame	ENST00000295903	ENST00000397491		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
5CDS-intron	ENST00000295903	ENST00000489224		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
Frame-shit	ENST00000498707	ENST00000256509		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
In-frame	ENST00000498707	ENST00000397491		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
5CDS-intron	ENST00000498707	ENST00000489224		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
intron-3CDS	ENST00000467257	ENST00000256509		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
intron-3CDS	ENST00000467257	ENST00000397491		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
intron-intron	ENST00000467257	ENST00000489224		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
intron-3CDS	ENST00000459780	ENST00000256509		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
intron-3CDS	ENST00000459780	ENST00000397491		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
intron-intron	ENST00000459780	ENST00000489224		TCGA	RV	LUAD	TCGA-62-8395-01A	ADAMTS9	chr3	64619374	-	CHL1	chr3	447178	+
Frame-shit	ENST00000371839	ENST00000366991		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
5CDS-intron	ENST00000371839	ENST00000542077		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
5CDS-intron	ENST00000371839	ENST00000475419		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
Frame-shit	ENST00000371838	ENST00000366991		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
5CDS-intron	ENST00000371838	ENST00000542077		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
5CDS-intron	ENST00000371838	ENST00000475419		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
Frame-shit	ENST00000371836	ENST00000366991		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
5CDS-intron	ENST00000371836	ENST00000542077		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
5CDS-intron	ENST00000371836	ENST00000475419		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
intron-3CDS	ENST00000334103	ENST00000366991		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
intron-intron	ENST00000334103	ENST00000542077		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
intron-intron	ENST00000334103	ENST00000475419		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
intron-3CDS	ENST00000497451	ENST00000366991		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
intron-intron	ENST00000497451	ENST00000542077		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
intron-intron	ENST00000497451	ENST00000475419		TCGA	RV	LUAD	TCGA-49-4501-01A	AGBL4	chr1	50489435	-	DTL	chr1	212216335	+
Frame-shit	ENST00000262844	ENST00000373032		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	AMMECR1	chrX	109507717	-	PLA2G12B	chr10	74702498	-
intron-3CDS	ENST00000372059	ENST00000373032		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	AMMECR1	chrX	109507717	-	PLA2G12B	chr10	74702498	-
In-frame	ENST00000372057	ENST00000373032		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	AMMECR1	chrX	109507717	-	PLA2G12B	chr10	74702498	-
intron-3CDS	ENST00000496695	ENST00000373032		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	AMMECR1	chrX	109507717	-	PLA2G12B	chr10	74702498	-
5CDS-intron	ENST00000301455	ENST00000513761		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000301455	ENST00000347613		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000301455	ENST00000360642		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000301455	ENST00000504131		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000301455	ENST00000506924		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000541807	ENST00000513761		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000541807	ENST00000347613		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000541807	ENST00000360642		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000541807	ENST00000504131		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000541807	ENST00000506924		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393962	ENST00000513761		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393962	ENST00000347613		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393962	ENST00000360642		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393962	ENST00000504131		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000393962	ENST00000506924		TCGA	RV	LUAD	TCGA-80-5608-01A	ANGPTL4	chr19	8439257	+	CLCN3	chr4	170623929	+
5CDS-5UTR	ENST00000355272	ENST00000344663		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000355272	ENST00000591806		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000355272	ENST00000311401		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000355272	ENST00000415183		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000355272	ENST00000591453		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000356926	ENST00000344663		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000356926	ENST00000591806		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000356926	ENST00000311401		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000356926	ENST00000415183		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000356926	ENST00000591453		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000350812	ENST00000344663		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000350812	ENST00000591806		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000350812	ENST00000311401		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000350812	ENST00000415183		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000350812	ENST00000591453		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000345016	ENST00000344663		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000345016	ENST00000591806		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-5UTR	ENST00000345016	ENST00000311401		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000345016	ENST00000415183		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
5CDS-intron	ENST00000345016	ENST00000591453		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
intron-5UTR	ENST00000590683	ENST00000344663		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
intron-5UTR	ENST00000590683	ENST00000591806		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
intron-5UTR	ENST00000590683	ENST00000311401		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
intron-intron	ENST00000590683	ENST00000415183		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
intron-intron	ENST00000590683	ENST00000591453		TCGA	RV	LUAD	TCGA-67-6217-01A	AP3D1	chr19	2108686	-	MUM1	chr19	1356323	+
intron-intron	ENST00000434909	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000434909	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000509504	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000311813	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000482461	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
5CDS-intron	ENST00000441328	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409899	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000556679		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000456570		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000477310		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000425368		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000497841		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000417261		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000427888		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000459734		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000455591		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000433503		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000474621		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000424727		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000436692		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000473139		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000399981		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000419920		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000465211		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000375455		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000489605		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000426239		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000419411		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
intron-intron	ENST00000409611	ENST00000460958		TCGA	RV	LUAD	TCGA-55-7816-01A	AQP1	chr7	30965131	+	CFB	chr6	31913427	+
Frame-shit	ENST00000582520	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000582520	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000582520	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000582520	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
5CDS-intron	ENST00000582520	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
5CDS-intron	ENST00000582520	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000269321	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000269321	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000269321	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000269321	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
5CDS-intron	ENST00000269321	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
5CDS-intron	ENST00000269321	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000400721	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000400721	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000400721	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000400721	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000400721	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000400721	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000584461	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000584461	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000584461	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000584461	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000584461	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000584461	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000541078	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000541078	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000541078	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000541078	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000541078	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000541078	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000580685	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000580685	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000580685	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000580685	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000580685	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000580685	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000581876	ENST00000508628		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000581876	ENST00000456466		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000581876	ENST00000582970		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000581876	ENST00000319921		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000581876	ENST00000336301		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
intron-intron	ENST00000581876	ENST00000427003		TCGA	RV	LUAD	TCGA-55-6983-01A	ARHGDIA	chr17	79825598	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000317133	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000317133	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000317133	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000317133	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000317133	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375741	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375741	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375741	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375741	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000375741	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375739	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375739	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375739	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375739	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000375739	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000370623	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000370623	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000370623	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000370623	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000370623	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
In-frame	ENST00000544132	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
In-frame	ENST00000544132	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
In-frame	ENST00000544132	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
In-frame	ENST00000544132	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000544132	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000218789	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000218789	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000218789	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000218789	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000218789	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375736	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375736	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375736	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375736	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000375736	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000426073	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000426073	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000426073	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000426073	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000426073	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375737	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375737	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375737	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375737	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000375737	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375723	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375723	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375723	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000375723	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000375723	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000478679	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000478679	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000478679	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
Frame-shit	ENST00000478679	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
5CDS-intron	ENST00000478679	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
3UTR-3CDS	ENST00000483189	ENST00000283558		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
3UTR-3CDS	ENST00000483189	ENST00000375630		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
3UTR-3CDS	ENST00000483189	ENST00000487903		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
3UTR-3CDS	ENST00000483189	ENST00000375645		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
3UTR-intron	ENST00000483189	ENST00000419448		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ARHGEF7	chr13	111920017	+	ATP11A	chr13	113459271	+
In-frame	ENST00000276569	ENST00000453587		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
In-frame	ENST00000276569	ENST00000517608		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
In-frame	ENST00000276569	ENST00000602969		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
In-frame	ENST00000276569	ENST00000602593		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
In-frame	ENST00000276569	ENST00000419880		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000458464	ENST00000453587		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000458464	ENST00000517608		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000458464	ENST00000602969		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000458464	ENST00000602593		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000458464	ENST00000419880		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000523384	ENST00000453587		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000523384	ENST00000517608		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000523384	ENST00000602969		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000523384	ENST00000602593		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000523384	ENST00000419880		TCGA	RV	LUAD	TCGA-78-7153-01A	ARMC1	chr8	66525479	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000262053	ENST00000398016		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000262053	ENST00000359742		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000262053	ENST00000286445		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000262053	ENST00000542021		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
5UTR-3CDS	ENST00000539132	ENST00000398016		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
5UTR-3CDS	ENST00000539132	ENST00000359742		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
5UTR-3CDS	ENST00000539132	ENST00000286445		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
5UTR-intron	ENST00000539132	ENST00000542021		TCGA	RV	LUAD	TCGA-78-7150-01A	ATF1	chr12	51174021	+	GRIP1	chr12	66990707	-
In-frame	ENST00000367816	ENST00000263593		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000367816	ENST00000545756		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000367816	ENST00000525730		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000367815	ENST00000263593		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-intron	ENST00000367815	ENST00000545756		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-intron	ENST00000367815	ENST00000525730		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000499679	ENST00000263593		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-intron	ENST00000499679	ENST00000545756		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-intron	ENST00000499679	ENST00000525730		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000367813	ENST00000263593		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-intron	ENST00000367813	ENST00000545756		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
intron-intron	ENST00000367813	ENST00000525730		TCGA	RV	LUAD	TCGA-44-2656-01A	ATP1B1	chr1	169101960	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000308664	ENST00000261318		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
5CDS-intron	ENST00000308664	ENST00000548356		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
5CDS-intron	ENST00000308664	ENST00000536380		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
Frame-shit	ENST00000395494	ENST00000261318		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
5CDS-intron	ENST00000395494	ENST00000548356		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
5CDS-intron	ENST00000395494	ENST00000536380		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
Frame-shit	ENST00000539276	ENST00000261318		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
5CDS-intron	ENST00000539276	ENST00000548356		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
5CDS-intron	ENST00000539276	ENST00000536380		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
3UTR-3CDS	ENST00000550248	ENST00000261318		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
3UTR-intron	ENST00000550248	ENST00000548356		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
3UTR-intron	ENST00000550248	ENST00000536380		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
intron-3CDS	ENST00000552636	ENST00000261318		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
intron-intron	ENST00000552636	ENST00000548356		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
intron-intron	ENST00000552636	ENST00000536380		TCGA	RV	LUAD	TCGA-44-6779-01A	ATP2A2	chr12	110734542	+	C12orf49	chr12	117161028	-
Frame-shit	ENST00000308664	ENST00000552912		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000308664	ENST00000242591		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000308664	ENST00000361948		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000308664	ENST00000549009		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000395494	ENST00000552912		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000395494	ENST00000242591		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000395494	ENST00000361948		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000395494	ENST00000549009		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000539276	ENST00000552912		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000539276	ENST00000242591		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000539276	ENST00000361948		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000539276	ENST00000549009		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
3UTR-3CDS	ENST00000550248	ENST00000552912		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
3UTR-3CDS	ENST00000550248	ENST00000242591		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
3UTR-3CDS	ENST00000550248	ENST00000361948		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
3UTR-3UTR	ENST00000550248	ENST00000549009		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000552636	ENST00000552912		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000552636	ENST00000242591		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000552636	ENST00000361948		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
intron-3UTR	ENST00000552636	ENST00000549009		TCGA	RV	LUAD	TCGA-49-6742-01A	ATP2A2	chr12	110734542	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000335016	ENST00000296043		TCGA	RV	LUAD	TCGA-78-7535-01A	BMP2K	chr4	79697875	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000335016	ENST00000473602		TCGA	RV	LUAD	TCGA-78-7535-01A	BMP2K	chr4	79697875	+	SHROOM3	chr4	77476762	+
Frame-shit	ENST00000502871	ENST00000296043		TCGA	RV	LUAD	TCGA-78-7535-01A	BMP2K	chr4	79697875	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000502871	ENST00000473602		TCGA	RV	LUAD	TCGA-78-7535-01A	BMP2K	chr4	79697875	+	SHROOM3	chr4	77476762	+
Frame-shit	ENST00000333229	ENST00000270112		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
5CDS-intron	ENST00000333229	ENST00000465574		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
Frame-shit	ENST00000342449	ENST00000270112		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
5CDS-intron	ENST00000342449	ENST00000465574		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
Frame-shit	ENST00000380800	ENST00000270112		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
5CDS-intron	ENST00000380800	ENST00000465574		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
intron-3CDS	ENST00000341322	ENST00000270112		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
intron-intron	ENST00000341322	ENST00000465574		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
intron-3CDS	ENST00000470108	ENST00000270112		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
intron-intron	ENST00000470108	ENST00000465574		TCGA	RV	LUAD	TCGA-05-4398-01A	BRWD1	chr21	40641825	-	HUNK	chr21	33340562	+
Frame-shit	ENST00000313334	ENST00000426559		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000313334	ENST00000455785		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000313334	ENST00000399728		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000313334	ENST00000465604		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000313334	ENST00000357865		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000313334	ENST00000374291		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
Frame-shit	ENST00000489308	ENST00000426559		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000489308	ENST00000455785		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000489308	ENST00000399728		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000489308	ENST00000465604		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000489308	ENST00000357865		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000489308	ENST00000374291		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5UTR-3CDS	ENST00000472944	ENST00000426559		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5UTR-intron	ENST00000472944	ENST00000455785		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5UTR-intron	ENST00000472944	ENST00000399728		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5UTR-intron	ENST00000472944	ENST00000465604		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5UTR-intron	ENST00000472944	ENST00000357865		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5UTR-intron	ENST00000472944	ENST00000374291		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
Frame-shit	ENST00000484036	ENST00000426559		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000484036	ENST00000455785		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000484036	ENST00000399728		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000484036	ENST00000465604		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000484036	ENST00000357865		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-intron	ENST00000484036	ENST00000374291		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
3UTR-3CDS	ENST00000533836	ENST00000426559		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
3UTR-intron	ENST00000533836	ENST00000455785		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
3UTR-intron	ENST00000533836	ENST00000399728		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
3UTR-intron	ENST00000533836	ENST00000465604		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
3UTR-intron	ENST00000533836	ENST00000357865		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
3UTR-intron	ENST00000533836	ENST00000374291		TCGA	RV	LUAD	TCGA-95-A4VN-01A	BTF3L4	chr1	52530610	+	STMN1	chr1	26212360	-
5CDS-5UTR	ENST00000286186	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000286186	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000286186	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000286186	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000286186	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000286186	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000286186	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000360132	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000360132	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000360132	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000360132	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000360132	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000360132	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000272879	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000272879	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-5UTR	ENST00000272879	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000272879	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000272879	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000272879	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000374650	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000374650	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000374650	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000374650	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000374650	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000374650	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000346817	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000346817	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000346817	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000346817	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000346817	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000346817	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000313728	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000313728	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000313728	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000313728	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000313728	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000313728	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000448480	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000448480	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000448480	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000448480	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000448480	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000448480	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000309955		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000492363	ENST00000443227		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000341222		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000340870		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000355558		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000341582		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000342795		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000395148		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000423241		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000492363	ENST00000490965		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000492363	ENST00000440180		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000492363	ENST00000457277		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000492363	ENST00000494258		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000492363	ENST00000479953		TCGA	RV	LUAD	TCGA-71-8520-01A	CASP10	chr2	202070696	+	CFLAR	chr2	201994452	+
5CDS-intron	ENST00000338252	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000338252	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000338252	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000338252	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000338252	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000338252	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508830	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508830	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508830	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508830	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508830	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508830	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000359176	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000359176	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000359176	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000359176	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000359176	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000359176	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395812	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395812	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395812	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395812	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395812	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395812	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000325674	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000325674	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000325674	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000325674	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000325674	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000325674	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395813	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395813	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395813	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395813	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395813	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000395813	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000510756	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000510756	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000510756	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000510756	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000510756	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000510756	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508608	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508608	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508608	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508608	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508608	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508608	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000341926	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000341926	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000341926	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000341926	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000341926	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000341926	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000511049	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000511049	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000511049	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000511049	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000511049	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000511049	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000309190	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000309190	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000309190	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000309190	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000309190	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
3UTR-intron	ENST00000309190	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000509903	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000509903	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000509903	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000509903	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000509903	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000509903	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000511782	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000511782	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000511782	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000511782	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000511782	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000511782	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000504465	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000504465	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000504465	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000504465	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000504465	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000504465	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000348386	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000348386	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000348386	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000348386	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000348386	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000348386	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508579	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508579	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508579	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508579	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508579	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000508579	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000515663	ENST00000470188		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000515663	ENST00000542731		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000515663	ENST00000343407		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000515663	ENST00000317716		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000515663	ENST00000478080		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000515663	ENST00000541203		TCGA	RV	LUAD	TCGA-75-7025-01A	CAST	chr5	96108937	+	CDHR3	chr7	105668108	+
5CDS-5UTR	ENST00000440859	ENST00000265715		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000440859	ENST00000541474		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000440859	ENST00000544569		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000440859	ENST00000543100		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000440859	ENST00000480841		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-5UTR	ENST00000222597	ENST00000265715		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000222597	ENST00000541474		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000222597	ENST00000544569		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000222597	ENST00000543100		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000222597	ENST00000480841		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-5UTR	ENST00000415884	ENST00000265715		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000415884	ENST00000541474		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000415884	ENST00000544569		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000415884	ENST00000543100		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
5CDS-intron	ENST00000415884	ENST00000480841		TCGA	RV	LUAD	TCGA-91-8499-01A	CBLL1	chr7	107389492	+	SLC26A4	chr7	107302084	+
In-frame	ENST00000394886	ENST00000323760		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
In-frame	ENST00000394886	ENST00000357274		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
In-frame	ENST00000394886	ENST00000348983		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
In-frame	ENST00000394886	ENST00000356505		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
In-frame	ENST00000394886	ENST00000415130		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
In-frame	ENST00000394886	ENST00000513970		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
In-frame	ENST00000394886	ENST00000514555		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000323760		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000357274		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000348983		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000356505		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000415130		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000513970		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000394884	ENST00000514555		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000323760		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000357274		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000348983		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000356505		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000415130		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000513970		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
intron-3CDS	ENST00000505120	ENST00000514555		TCGA	RV	LUAD	TCGA-44-4112-01A	CDC23	chr5	137536796	-	CDC25C	chr5	137627805	-
5CDS-intron	ENST00000349499	ENST00000399353		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000381318		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000381291		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000381285		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000399367		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000399352		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000399355		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000399349		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000399338		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000379960		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000437442		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-3UTR	ENST00000349499	ENST00000399326		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000349499	ENST00000488166		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000399353		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000381318		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000381291		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000381285		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000399367		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000399352		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000399355		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000399349		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000399338		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000379960		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000437442		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-3UTR	ENST00000360731	ENST00000399326		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-intron	ENST00000360731	ENST00000488166		TCGA	RV	LUAD	TCGA-55-7913-01B	CLIC6	chr21	36043061	+	ITSN1	chr21	35254547	+
5CDS-3UTR	ENST00000309964	ENST00000511469		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000309964	ENST00000264218		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000309964	ENST00000505262		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000309964	ENST00000507338		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-5UTR	ENST00000309964	ENST00000515325		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000381322	ENST00000511469		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000381322	ENST00000264218		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000381322	ENST00000505262		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000381322	ENST00000507338		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-5UTR	ENST00000381322	ENST00000515325		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000513440	ENST00000511469		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000513440	ENST00000264218		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000513440	ENST00000505262		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-3UTR	ENST00000513440	ENST00000507338		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5CDS-5UTR	ENST00000513440	ENST00000515325		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
intron-3UTR	ENST00000506923	ENST00000511469		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
intron-3UTR	ENST00000506923	ENST00000264218		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
intron-3UTR	ENST00000506923	ENST00000505262		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
intron-3UTR	ENST00000506923	ENST00000507338		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
intron-5UTR	ENST00000506923	ENST00000515325		TCGA	RV	LUAD	TCGA-55-6969-01A	CLOCK	chr4	56322064	-	NMU	chr4	56461578	-
5UTR-3CDS	ENST00000309964	ENST00000257290		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
5UTR-intron	ENST00000309964	ENST00000508170		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
5UTR-3CDS	ENST00000381322	ENST00000257290		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
5UTR-intron	ENST00000381322	ENST00000508170		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
5UTR-3CDS	ENST00000513440	ENST00000257290		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
5UTR-intron	ENST00000513440	ENST00000508170		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
intron-3CDS	ENST00000506923	ENST00000257290		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
intron-intron	ENST00000506923	ENST00000508170		TCGA	RV	LUAD	TCGA-69-7979-01A	CLOCK	chr4	56376079	-	PDGFRA	chr4	55153597	+
In-frame	ENST00000262932	ENST00000303904		TCGA	RV	LUAD	TCGA-44-2666-01A	CNPY4	chr7	99717485	+	COPS6	chr7	99686913	+
In-frame	ENST00000262932	ENST00000418625		TCGA	RV	LUAD	TCGA-44-2666-01A	CNPY4	chr7	99717485	+	COPS6	chr7	99686913	+
intron-3CDS	ENST00000480692	ENST00000303904		TCGA	RV	LUAD	TCGA-44-2666-01A	CNPY4	chr7	99717485	+	COPS6	chr7	99686913	+
intron-3CDS	ENST00000480692	ENST00000418625		TCGA	RV	LUAD	TCGA-44-2666-01A	CNPY4	chr7	99717485	+	COPS6	chr7	99686913	+
3UTR-3CDS	ENST00000537875	ENST00000361204		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
3UTR-intron	ENST00000537875	ENST00000491541		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
Frame-shit	ENST00000309791	ENST00000361204		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
5CDS-intron	ENST00000309791	ENST00000491541		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
Frame-shit	ENST00000297848	ENST00000361204		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
5CDS-intron	ENST00000297848	ENST00000491541		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
Frame-shit	ENST00000247781	ENST00000361204		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
5CDS-intron	ENST00000247781	ENST00000491541		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
3UTR-3CDS	ENST00000432943	ENST00000361204		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
3UTR-intron	ENST00000432943	ENST00000491541		TCGA	RV	LUAD	TCGA-99-AA5R-01A	COL14A1	chr8	121241008	+	SREBF2	chr22	42271341	+
3UTR-3CDS	ENST00000435070	ENST00000403712		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000435070	ENST00000405430		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000435070	ENST00000356150		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000435070	ENST00000403658		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-5UTR	ENST00000435070	ENST00000468321		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000435070	ENST00000402632		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000435070	ENST00000415006		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000435070	ENST00000403657		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000456847	ENST00000403712		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000456847	ENST00000405430		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000456847	ENST00000356150		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000456847	ENST00000403658		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-5UTR	ENST00000456847	ENST00000468321		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000456847	ENST00000402632		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000456847	ENST00000415006		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000456847	ENST00000403657		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000266679	ENST00000403712		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000266679	ENST00000405430		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000266679	ENST00000356150		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-3CDS	ENST00000266679	ENST00000403658		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-5UTR	ENST00000266679	ENST00000468321		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000266679	ENST00000402632		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000266679	ENST00000415006		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
3UTR-intron	ENST00000266679	ENST00000403657		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-3CDS	ENST00000550987	ENST00000403712		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-3CDS	ENST00000550987	ENST00000405430		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-3CDS	ENST00000550987	ENST00000356150		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-3CDS	ENST00000550987	ENST00000403658		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-5UTR	ENST00000550987	ENST00000468321		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-intron	ENST00000550987	ENST00000402632		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-intron	ENST00000550987	ENST00000415006		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
intron-intron	ENST00000550987	ENST00000403657		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
Frame-shit	ENST00000551516	ENST00000403712		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
Frame-shit	ENST00000551516	ENST00000405430		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
Frame-shit	ENST00000551516	ENST00000356150		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
In-frame	ENST00000551516	ENST00000403658		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
5CDS-5UTR	ENST00000551516	ENST00000468321		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
5CDS-intron	ENST00000551516	ENST00000402632		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
5CDS-intron	ENST00000551516	ENST00000415006		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
5CDS-intron	ENST00000551516	ENST00000403657		TCGA	RV	LUAD	TCGA-50-5049-01A	CPSF6	chr12	69656342	+	SH3YL1	chr2	219001	-
In-frame	ENST00000371486	ENST00000371514		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
In-frame	ENST00000371486	ENST00000528311		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
In-frame	ENST00000371486	ENST00000371509		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
In-frame	ENST00000371486	ENST00000407246		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
In-frame	ENST00000371486	ENST00000371513		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
5CDS-intron	ENST00000371486	ENST00000473584		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
5CDS-intron	ENST00000371486	ENST00000430330		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
5CDS-intron	ENST00000371486	ENST00000408941		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
5CDS-intron	ENST00000371486	ENST00000435345		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
5CDS-intron	ENST00000371486	ENST00000488965		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-3CDS	ENST00000468572	ENST00000371514		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-3CDS	ENST00000468572	ENST00000528311		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-3CDS	ENST00000468572	ENST00000371509		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-3CDS	ENST00000468572	ENST00000407246		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-3CDS	ENST00000468572	ENST00000371513		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-intron	ENST00000468572	ENST00000473584		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-intron	ENST00000468572	ENST00000430330		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-intron	ENST00000468572	ENST00000408941		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-intron	ENST00000468572	ENST00000435345		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
intron-intron	ENST00000468572	ENST00000488965		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	CPT2	chr1	53676991	+	SCP2	chr1	53420412	+
In-frame	ENST00000280527	ENST00000376771		TCGA	RV	LUAD	TCGA-L9-A743-01A	CRIM1	chr2	36583766	+	TBC1D25	chrX	48417285	+
5CDS-intron	ENST00000280527	ENST00000537536		TCGA	RV	LUAD	TCGA-L9-A743-01A	CRIM1	chr2	36583766	+	TBC1D25	chrX	48417285	+
5CDS-3UTR	ENST00000280527	ENST00000476141		TCGA	RV	LUAD	TCGA-L9-A743-01A	CRIM1	chr2	36583766	+	TBC1D25	chrX	48417285	+
intron-3CDS	ENST00000473403	ENST00000376771		TCGA	RV	LUAD	TCGA-L9-A743-01A	CRIM1	chr2	36583766	+	TBC1D25	chrX	48417285	+
intron-intron	ENST00000473403	ENST00000537536		TCGA	RV	LUAD	TCGA-L9-A743-01A	CRIM1	chr2	36583766	+	TBC1D25	chrX	48417285	+
intron-3UTR	ENST00000473403	ENST00000476141		TCGA	RV	LUAD	TCGA-L9-A743-01A	CRIM1	chr2	36583766	+	TBC1D25	chrX	48417285	+
3UTR-3CDS	ENST00000486447	ENST00000421745		TCGA	RV	LUAD	TCGA-50-6673-01A	CRIPT	chr2	46846820	+	BIRC6	chr2	32842792	+
Frame-shit	ENST00000238892	ENST00000421745		TCGA	RV	LUAD	TCGA-50-6673-01A	CRIPT	chr2	46846820	+	BIRC6	chr2	32842792	+
In-frame	ENST00000350796	ENST00000295213		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
In-frame	ENST00000350796	ENST00000419395		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
5CDS-3UTR	ENST00000350796	ENST00000506829		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
intron-3CDS	ENST00000396741	ENST00000295213		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
intron-3CDS	ENST00000396741	ENST00000419395		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
intron-3UTR	ENST00000396741	ENST00000506829		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
intron-3CDS	ENST00000488964	ENST00000295213		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
intron-3CDS	ENST00000488964	ENST00000419395		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
intron-3UTR	ENST00000488964	ENST00000506829		TCGA	RV	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52938083	+
Frame-shit	ENST00000563594	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
5CDS-intron	ENST00000563594	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
Frame-shit	ENST00000268676	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
5CDS-intron	ENST00000268676	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
Frame-shit	ENST00000569453	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
5CDS-intron	ENST00000569453	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
intron-3CDS	ENST00000418391	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
intron-intron	ENST00000418391	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
Frame-shit	ENST00000567874	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
5CDS-intron	ENST00000567874	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
Frame-shit	ENST00000570182	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
5CDS-intron	ENST00000570182	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
Frame-shit	ENST00000563795	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
5CDS-intron	ENST00000563795	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
intron-3CDS	ENST00000563848	ENST00000311635		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
intron-intron	ENST00000563848	ENST00000563956		TCGA	RV	LUAD	TCGA-50-6591-01A	DEF8	chr16	90030983	+	FBXO31	chr16	87365116	-
Frame-shit	ENST00000537045	ENST00000405015		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000537045	ENST00000431489		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000537045	ENST00000354487		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000537045	ENST00000263991		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000537045	ENST00000405289		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5CDS-3UTR	ENST00000537045	ENST00000496857		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000263196	ENST00000405015		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000263196	ENST00000431489		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000263196	ENST00000354487		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000263196	ENST00000263991		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000263196	ENST00000405289		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5CDS-3UTR	ENST00000263196	ENST00000496857		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
In-frame	ENST00000545799	ENST00000405015		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
In-frame	ENST00000545799	ENST00000431489		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
In-frame	ENST00000545799	ENST00000354487		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
In-frame	ENST00000545799	ENST00000263991		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
In-frame	ENST00000545799	ENST00000405289		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5CDS-3UTR	ENST00000545799	ENST00000496857		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5UTR-3CDS	ENST00000473832	ENST00000405015		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5UTR-3CDS	ENST00000473832	ENST00000431489		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5UTR-3CDS	ENST00000473832	ENST00000354487		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5UTR-3CDS	ENST00000473832	ENST00000263991		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5UTR-3CDS	ENST00000473832	ENST00000405289		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
5UTR-3UTR	ENST00000473832	ENST00000496857		TCGA	RV	LUAD	TCGA-91-6840-01A	DGCR2	chr22	19052361	-	EHBP1	chr2	63220665	+
Frame-shit	ENST00000371269	ENST00000263593		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371269	ENST00000545756		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371269	ENST00000525730		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000537443	ENST00000263593		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
intron-intron	ENST00000537443	ENST00000545756		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
intron-intron	ENST00000537443	ENST00000525730		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000535035	ENST00000263593		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
intron-intron	ENST00000535035	ENST00000545756		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
intron-intron	ENST00000535035	ENST00000525730		TCGA	RV	LUAD	TCGA-55-6543-01A	DHCR24	chr1	55315300	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000220496	ENST00000299174		TCGA	RV	LUAD	TCGA-55-6986-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41109545	-
5CDS-intron	ENST00000220496	ENST00000427255		TCGA	RV	LUAD	TCGA-55-6986-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41109545	-
intron-intron	ENST00000558727	ENST00000299174		TCGA	RV	LUAD	TCGA-55-6986-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41109545	-
intron-intron	ENST00000558727	ENST00000427255		TCGA	RV	LUAD	TCGA-55-6986-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41109545	-
Frame-shit	ENST00000428084	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000428084	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000428084	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000428084	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000428084	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000428084	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000428084	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000428084	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000494651	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000494651	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000494651	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000494651	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-intron	ENST00000494651	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-intron	ENST00000494651	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000494651	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000494651	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000437633	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000437633	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000437633	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000437633	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000437633	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000437633	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000437633	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000437633	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-3CDS	ENST00000476846	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-3CDS	ENST00000476846	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-3CDS	ENST00000476846	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-3CDS	ENST00000476846	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-intron	ENST00000476846	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-intron	ENST00000476846	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-5UTR	ENST00000476846	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
5UTR-5UTR	ENST00000476846	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000399151	ENST00000290354		TCGA	RV	LUAD	TCGA-05-4420-01A	DOPEY2	chr21	37571549	+	CBR3	chr21	37510123	+
intron-3CDS	ENST00000492760	ENST00000290354		TCGA	RV	LUAD	TCGA-05-4420-01A	DOPEY2	chr21	37571549	+	CBR3	chr21	37510123	+
In-frame	ENST00000366523	ENST00000355875		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000366523	ENST00000366541		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000366523	ENST00000343783		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000366523	ENST00000391846		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000366523	ENST00000496361		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000366522	ENST00000355875		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000366522	ENST00000366541		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000366522	ENST00000343783		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000366522	ENST00000391846		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000366522	ENST00000496361		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000447569	ENST00000355875		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000447569	ENST00000366541		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000447569	ENST00000343783		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000447569	ENST00000391846		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000447569	ENST00000496361		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
3UTR-3CDS	ENST00000487845	ENST00000355875		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
3UTR-3CDS	ENST00000487845	ENST00000366541		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
3UTR-5UTR	ENST00000487845	ENST00000343783		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
3UTR-5UTR	ENST00000487845	ENST00000391846		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
3UTR-intron	ENST00000487845	ENST00000496361		TCGA	RV	LUAD	TCGA-78-7155-01A	EFCAB2	chr1	245222760	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000375980	ENST00000375999		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
In-frame	ENST00000375980	ENST00000417793		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
In-frame	ENST00000375980	ENST00000358897		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
In-frame	ENST00000375980	ENST00000375998		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
5CDS-intron	ENST00000375980	ENST00000375995		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
5CDS-intron	ENST00000375980	ENST00000401090		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
5CDS-3UTR	ENST00000375980	ENST00000471347		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
5CDS-3UTR	ENST00000375980	ENST00000314740		TCGA	RV	LUAD	TCGA-L9-A7SV-01A	EFHD2	chr1	15736775	+	FHAD1	chr1	15695866	+
intron-intron	ENST00000584601	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000584601	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000406381	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000406381	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000541774	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000541774	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000445658	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000445658	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000540147	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000540147	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000584450	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000584450	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000269571	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000269571	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000578199	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000578199	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000540042	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000540042	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000584888	ENST00000216297		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000584888	ENST00000555943		TCGA	RV	LUAD	TCGA-69-7761-01A	ERBB2	chr17	37884915	+	SUPT16H	chr14	21829491	-
In-frame	ENST00000292147	ENST00000370830		TCGA	RV	LUAD	TCGA-55-7815-01A	ETHE1	chr19	44030667	-	BMP5	chr6	55639041	-
In-frame	ENST00000292147	ENST00000446683		TCGA	RV	LUAD	TCGA-55-7815-01A	ETHE1	chr19	44030667	-	BMP5	chr6	55639041	-
In-frame	ENST00000600651	ENST00000370830		TCGA	RV	LUAD	TCGA-55-7815-01A	ETHE1	chr19	44030667	-	BMP5	chr6	55639041	-
In-frame	ENST00000600651	ENST00000446683		TCGA	RV	LUAD	TCGA-55-7815-01A	ETHE1	chr19	44030667	-	BMP5	chr6	55639041	-
In-frame	ENST00000396153	ENST00000367843		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000396153	ENST00000432587		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000396153	ENST00000312263		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000396153	ENST00000367840		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
5CDS-intron	ENST00000396153	ENST00000470919		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
Frame-shit	ENST00000371778	ENST00000367843		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
Frame-shit	ENST00000371778	ENST00000432587		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
Frame-shit	ENST00000371778	ENST00000312263		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
Frame-shit	ENST00000371778	ENST00000367840		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
5CDS-intron	ENST00000371778	ENST00000470919		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000545823	ENST00000367843		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000545823	ENST00000432587		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000545823	ENST00000312263		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
In-frame	ENST00000545823	ENST00000367840		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
5CDS-intron	ENST00000545823	ENST00000470919		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000472808	ENST00000367843		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000472808	ENST00000432587		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000472808	ENST00000312263		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
intron-3CDS	ENST00000472808	ENST00000367840		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
intron-intron	ENST00000472808	ENST00000470919		TCGA	RV	LUAD	TCGA-69-7763-01A	FAF1	chr1	51001041	-	DCAF6	chr1	168034828	+
Frame-shit	ENST00000064778	ENST00000334126		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
Frame-shit	ENST00000064778	ENST00000313663		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5CDS-intron	ENST00000064778	ENST00000542452		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5CDS-intron	ENST00000064778	ENST00000539061		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
Frame-shit	ENST00000450446	ENST00000334126		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
Frame-shit	ENST00000450446	ENST00000313663		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5CDS-intron	ENST00000450446	ENST00000542452		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5CDS-intron	ENST00000450446	ENST00000539061		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
Frame-shit	ENST00000356467	ENST00000334126		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
Frame-shit	ENST00000356467	ENST00000313663		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5CDS-intron	ENST00000356467	ENST00000542452		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5CDS-intron	ENST00000356467	ENST00000539061		TCGA	RV	LUAD	TCGA-44-7660-01A	FAM168A	chr11	73179450	-	C2CD3	chr11	73796931	-
5UTR-intron	ENST00000379312	ENST00000563303		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000379312	ENST00000329956		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000379312	ENST00000541146		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000379312	ENST00000563189		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000379312	ENST00000290940		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000379312	ENST00000435835		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
3UTR-intron	ENST00000566522	ENST00000563303		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
3UTR-intron	ENST00000566522	ENST00000329956		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
3UTR-intron	ENST00000566522	ENST00000541146		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
3UTR-intron	ENST00000566522	ENST00000563189		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
3UTR-intron	ENST00000566522	ENST00000290940		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
3UTR-intron	ENST00000566522	ENST00000435835		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000042381	ENST00000563303		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000042381	ENST00000329956		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000042381	ENST00000541146		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000042381	ENST00000563189		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000042381	ENST00000290940		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000042381	ENST00000435835		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000540839	ENST00000563303		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000540839	ENST00000329956		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000540839	ENST00000541146		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000540839	ENST00000563189		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000540839	ENST00000290940		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
5UTR-intron	ENST00000540839	ENST00000435835		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000422602	ENST00000563303		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000422602	ENST00000329956		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000422602	ENST00000541146		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000422602	ENST00000563189		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000422602	ENST00000290940		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000422602	ENST00000435835		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000428437	ENST00000563303		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000428437	ENST00000329956		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000428437	ENST00000541146		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000428437	ENST00000563189		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000428437	ENST00000290940		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
intron-intron	ENST00000428437	ENST00000435835		TCGA	RV	LUAD	TCGA-91-A4BC-01A	FAM65A	chr16	67562817	+	LRRC36	chr16	67375860	+
Frame-shit	ENST00000397609	ENST00000268206		TCGA	RV	LUAD	TCGA-86-7701-01A	FAM98B	chr15	38746433	+	EFTUD1	chr15	82456325	-
Frame-shit	ENST00000397609	ENST00000359445		TCGA	RV	LUAD	TCGA-86-7701-01A	FAM98B	chr15	38746433	+	EFTUD1	chr15	82456325	-
5CDS-intron	ENST00000397609	ENST00000561331		TCGA	RV	LUAD	TCGA-86-7701-01A	FAM98B	chr15	38746433	+	EFTUD1	chr15	82456325	-
Frame-shit	ENST00000491535	ENST00000268206		TCGA	RV	LUAD	TCGA-86-7701-01A	FAM98B	chr15	38746433	+	EFTUD1	chr15	82456325	-
Frame-shit	ENST00000491535	ENST00000359445		TCGA	RV	LUAD	TCGA-86-7701-01A	FAM98B	chr15	38746433	+	EFTUD1	chr15	82456325	-
5CDS-intron	ENST00000491535	ENST00000561331		TCGA	RV	LUAD	TCGA-86-7701-01A	FAM98B	chr15	38746433	+	EFTUD1	chr15	82456325	-
5UTR-3CDS	ENST00000476844	ENST00000383710		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000476844	ENST00000357948		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000476844	ENST00000283269		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-intron	ENST00000476844	ENST00000490353		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-intron	ENST00000476844	ENST00000462768		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000492590	ENST00000383710		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000492590	ENST00000357948		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000492590	ENST00000283269		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-intron	ENST00000492590	ENST00000490353		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-intron	ENST00000492590	ENST00000462768		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-3CDS	ENST00000466788	ENST00000383710		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-3CDS	ENST00000466788	ENST00000357948		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-3CDS	ENST00000466788	ENST00000283269		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-intron	ENST00000466788	ENST00000490353		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-intron	ENST00000466788	ENST00000462768		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000468189	ENST00000383710		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000468189	ENST00000357948		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-3CDS	ENST00000468189	ENST00000283269		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-intron	ENST00000468189	ENST00000490353		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
5UTR-intron	ENST00000468189	ENST00000462768		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-3CDS	ENST00000341848	ENST00000383710		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-3CDS	ENST00000341848	ENST00000357948		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-3CDS	ENST00000341848	ENST00000283269		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-intron	ENST00000341848	ENST00000490353		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
intron-intron	ENST00000341848	ENST00000462768		TCGA	RV	LUAD	TCGA-80-5611-01A	FHIT	chr3	61027719	-	CADPS	chr3	62484943	-
Frame-shit	ENST00000221856	ENST00000543264		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
Frame-shit	ENST00000221856	ENST00000599689		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
5CDS-3UTR	ENST00000221856	ENST00000600475		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
Frame-shit	ENST00000597590	ENST00000543264		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
Frame-shit	ENST00000597590	ENST00000599689		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
5CDS-3UTR	ENST00000597590	ENST00000600475		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
3UTR-3CDS	ENST00000598010	ENST00000543264		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
3UTR-3CDS	ENST00000598010	ENST00000599689		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
3UTR-3UTR	ENST00000598010	ENST00000600475		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	FSD1	chr19	4307980	+	SHD	chr19	4284778	+
In-frame	ENST00000357389	ENST00000377067		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
5CDS-intron	ENST00000357389	ENST00000483422		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
In-frame	ENST00000327773	ENST00000377067		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
5CDS-intron	ENST00000327773	ENST00000483422		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
5UTR-3CDS	ENST00000476291	ENST00000377067		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
5UTR-intron	ENST00000476291	ENST00000483422		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000418959	ENST00000377067		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
intron-intron	ENST00000418959	ENST00000483422		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000450766	ENST00000377067		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
intron-intron	ENST00000450766	ENST00000483422		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000355761	ENST00000377067		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
intron-intron	ENST00000355761	ENST00000483422		TCGA	RV	LUAD	TCGA-O1-A52J-01A	GAS6	chr13	114566548	-	GPC5	chr13	93518535	+
5UTR-5UTR	ENST00000381971	ENST00000311956		TCGA	RV	LUAD	TCGA-83-5908-01A	GLIS3	chr9	4299421	-	ARHGAP1	chr11	46717706	-
intron-5UTR	ENST00000324333	ENST00000311956		TCGA	RV	LUAD	TCGA-83-5908-01A	GLIS3	chr9	4299421	-	ARHGAP1	chr11	46717706	-
intron-5UTR	ENST00000461870	ENST00000311956		TCGA	RV	LUAD	TCGA-83-5908-01A	GLIS3	chr9	4299421	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000264235	ENST00000261037		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000264235	ENST00000273342		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000264235	ENST00000463753		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000316626	ENST00000261037		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000316626	ENST00000273342		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000316626	ENST00000463753		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
intron-5UTR	ENST00000473886	ENST00000261037		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
intron-5UTR	ENST00000473886	ENST00000273342		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
intron-intron	ENST00000473886	ENST00000463753		TCGA	RV	LUAD	TCGA-38-4631-01A	GSK3B	chr3	119642220	-	COL8A1	chr3	99509524	+
3UTR-5UTR	ENST00000373823	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373823	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373823	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373823	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373823	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373808	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373808	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373808	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373808	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373808	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000436847	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000436847	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000436847	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000436847	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000436847	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000449733	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000449733	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000449733	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000449733	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000449733	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000412819	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000412819	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000412819	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000412819	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000412819	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000394353	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000394353	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000394353	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000394353	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000394353	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000341272	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000341272	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000341272	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000341272	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000341272	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000545652	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000545652	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000545652	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000545652	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000545652	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373818	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373818	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373818	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-5UTR	ENST00000373818	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
3UTR-intron	ENST00000373818	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000485767	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000485767	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000485767	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000485767	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000485767	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373807	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373807	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373807	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373807	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373807	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373806	ENST00000376861		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373806	ENST00000334668		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373806	ENST00000259951		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-5UTR	ENST00000373806	ENST00000440587		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000434407		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000475996		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000342322		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000552082		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000551026		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000383516		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000383515		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000496199		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000422711		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000551832		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000549067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000428296		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000420067		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000485297		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000422439		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000490874		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000383626		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000550932		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000547132		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000383627		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000359076		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000489167		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000435058		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000551780		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000551347		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000445657		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000440590		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000490259		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000444891		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000549422		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000552880		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000549254		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000430472		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000376848		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
intron-intron	ENST00000373806	ENST00000463731		TCGA	RV	LUAD	TCGA-78-7542-01A	GSN	chr9	124095016	+	HLA-F	chr6	29691219	+
5UTR-3CDS	ENST00000216951	ENST00000336325		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
5UTR-3CDS	ENST00000216951	ENST00000360596		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
5UTR-3CDS	ENST00000216951	ENST00000253382		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
5UTR-3UTR	ENST00000216951	ENST00000476922		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3CDS	ENST00000541098	ENST00000336325		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3CDS	ENST00000541098	ENST00000360596		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3CDS	ENST00000541098	ENST00000253382		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3UTR	ENST00000541098	ENST00000476922		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3CDS	ENST00000451957	ENST00000336325		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3CDS	ENST00000451957	ENST00000360596		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3CDS	ENST00000451957	ENST00000253382		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
intron-3UTR	ENST00000451957	ENST00000476922		TCGA	RV	LUAD	TCGA-44-3919-01A	GSS	chr20	33543530	-	ACSS2	chr20	33513501	+
5UTR-5UTR	ENST00000591471	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000591471	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000591471	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000591471	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000591471	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
3UTR-5UTR	ENST00000589218	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
3UTR-intron	ENST00000589218	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
3UTR-intron	ENST00000589218	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
3UTR-intron	ENST00000589218	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
3UTR-intron	ENST00000589218	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-5UTR	ENST00000544914	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000544914	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000544914	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000544914	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
5UTR-intron	ENST00000544914	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000591417	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591417	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591417	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591417	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591417	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000592168	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000592168	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000592168	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000592168	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000592168	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000392153	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000392153	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000392153	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000392153	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000392153	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000589392	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000589392	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000589392	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000589392	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000589392	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000324411	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000324411	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000324411	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000324411	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000324411	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000591259	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591259	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591259	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591259	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591259	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000541583	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000541583	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000541583	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000541583	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000541583	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000591134	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591134	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591134	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591134	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000591134	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-5UTR	ENST00000586897	ENST00000264977		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000586897	ENST00000490467		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000586897	ENST00000334546		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000586897	ENST00000492624		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
intron-intron	ENST00000586897	ENST00000469270		TCGA	RV	LUAD	TCGA-55-A4DF-01A	HKR1	chr19	37815167	+	PPP2R3A	chr3	135719901	+
In-frame	ENST00000336648	ENST00000275764		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	HLCS	chr21	38269160	-	STRA8	chr7	134925271	+
Frame-shit	ENST00000399120	ENST00000275764		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	HLCS	chr21	38269160	-	STRA8	chr7	134925271	+
intron-3CDS	ENST00000482273	ENST00000275764		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	HLCS	chr21	38269160	-	STRA8	chr7	134925271	+
Frame-shit	ENST00000356956	ENST00000358372		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	IGF2R	chr6	160495007	+	WTAP	chr6	160163120	+
Frame-shit	ENST00000356956	ENST00000337387		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	IGF2R	chr6	160495007	+	WTAP	chr6	160163120	+
5CDS-intron	ENST00000356956	ENST00000494513		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	IGF2R	chr6	160495007	+	WTAP	chr6	160163120	+
intron-3CDS	ENST00000475584	ENST00000358372		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	IGF2R	chr6	160495007	+	WTAP	chr6	160163120	+
intron-3CDS	ENST00000475584	ENST00000337387		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	IGF2R	chr6	160495007	+	WTAP	chr6	160163120	+
intron-intron	ENST00000475584	ENST00000494513		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	IGF2R	chr6	160495007	+	WTAP	chr6	160163120	+
5UTR-5UTR	ENST00000429149	ENST00000564448		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
5UTR-5UTR	ENST00000429149	ENST00000251102		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
5UTR-intron	ENST00000429149	ENST00000564654		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
5UTR-5UTR	ENST00000429149	ENST00000311183		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000569641	ENST00000564448		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000569641	ENST00000251102		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-intron	ENST00000569641	ENST00000564654		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000569641	ENST00000311183		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000288098	ENST00000564448		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000288098	ENST00000251102		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-intron	ENST00000288098	ENST00000564654		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000288098	ENST00000311183		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000566361	ENST00000564448		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000566361	ENST00000251102		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-intron	ENST00000566361	ENST00000564654		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
intron-5UTR	ENST00000566361	ENST00000311183		TCGA	RV	LUAD	TCGA-49-4510-01A	IL34	chr16	70613952	+	CNGB1	chr16	58001198	-
In-frame	ENST00000579662	ENST00000584667		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000579662	ENST00000355423		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
5CDS-3UTR	ENST00000579662	ENST00000579864		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000339591	ENST00000584667		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000339591	ENST00000355423		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
5CDS-3UTR	ENST00000339591	ENST00000579864		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000200181	ENST00000584667		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000200181	ENST00000355423		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
5CDS-3UTR	ENST00000200181	ENST00000579864		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000450894	ENST00000584667		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000450894	ENST00000355423		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
5CDS-3UTR	ENST00000450894	ENST00000579864		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000449880	ENST00000584667		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
In-frame	ENST00000449880	ENST00000355423		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
5CDS-3UTR	ENST00000449880	ENST00000579864		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
3UTR-3CDS	ENST00000584558	ENST00000584667		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
3UTR-3CDS	ENST00000584558	ENST00000355423		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
3UTR-3UTR	ENST00000584558	ENST00000579864		TCGA	RV	LUAD	TCGA-97-A4M3-01A	ITGB4	chr17	73733725	+	SAP30BP	chr17	73689520	+
Frame-shit	ENST00000409556	ENST00000254644		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409556	ENST00000605125		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409556	ENST00000337109		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409556	ENST00000409180		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000312912	ENST00000254644		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000312912	ENST00000605125		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000312912	ENST00000337109		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000312912	ENST00000409180		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409064	ENST00000254644		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409064	ENST00000605125		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409064	ENST00000337109		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000409064	ENST00000409180		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000542128	ENST00000254644		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000542128	ENST00000605125		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000542128	ENST00000337109		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000542128	ENST00000409180		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
intron-3CDS	ENST00000485171	ENST00000254644		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
intron-3CDS	ENST00000485171	ENST00000605125		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
intron-3CDS	ENST00000485171	ENST00000337109		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
intron-3CDS	ENST00000485171	ENST00000409180		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM3A	chr2	86669356	+	MRPL35	chr2	86433229	+
Frame-shit	ENST00000535193	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000535193	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000535193	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000535193	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
5CDS-intron	ENST00000535193	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000543771	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000543771	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000543771	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000543771	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
5CDS-intron	ENST00000543771	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381306	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381306	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381306	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381306	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
5CDS-intron	ENST00000381306	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381309	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381309	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381309	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000381309	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
5CDS-intron	ENST00000381309	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000442236	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000442236	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000442236	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000442236	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
5CDS-intron	ENST00000442236	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000489243	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000489243	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000489243	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000489243	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-intron	ENST00000489243	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000536108	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000536108	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000536108	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000536108	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-intron	ENST00000536108	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000428870	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000428870	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000428870	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000428870	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
5CDS-intron	ENST00000428870	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000401787	ENST00000391807		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000401787	ENST00000595820		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000401787	ENST00000336317		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-3CDS	ENST00000401787	ENST00000597707		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
intron-intron	ENST00000401787	ENST00000595638		TCGA	RV	LUAD	TCGA-44-A4SU-01A	KDM4C	chr9	7049200	+	KLK7	chr19	51480947	-
Frame-shit	ENST00000361961	ENST00000280871		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
5CDS-intron	ENST00000361961	ENST00000380858		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
Frame-shit	ENST00000395670	ENST00000280871		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
5CDS-intron	ENST00000395670	ENST00000380858		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
Frame-shit	ENST00000544797	ENST00000280871		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
5CDS-intron	ENST00000544797	ENST00000380858		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
Frame-shit	ENST00000361418	ENST00000280871		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
5CDS-intron	ENST00000361418	ENST00000380858		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
Frame-shit	ENST00000541463	ENST00000280871		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
5CDS-intron	ENST00000541463	ENST00000380858		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
intron-3CDS	ENST00000547745	ENST00000280871		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
intron-intron	ENST00000547745	ENST00000380858		TCGA	RV	LUAD	TCGA-55-A493-01A	KIF21A	chr12	39836729	-	SLC2A13	chr12	40265763	-
In-frame	ENST00000309446	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000309446	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000309446	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000309446	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000309446	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
5CDS-intron	ENST00000309446	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000421199	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000421199	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000421199	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000421199	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000421199	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-intron	ENST00000421199	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000423015	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000423015	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000423015	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000423015	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000423015	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
5CDS-intron	ENST00000423015	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000458272	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000458272	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000458272	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000458272	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000458272	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
5CDS-intron	ENST00000458272	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000412414	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000412414	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000412414	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000412414	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000412414	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-intron	ENST00000412414	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000467833	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000467833	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000467833	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000467833	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000467833	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
intron-intron	ENST00000467833	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7536-01A	KLF7	chr2	208030191	-	PARD3B	chr2	205829875	+
In-frame	ENST00000400338	ENST00000325157		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
5CDS-intron	ENST00000400338	ENST00000490326		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
In-frame	ENST00000400335	ENST00000325157		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
5CDS-intron	ENST00000400335	ENST00000490326		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
In-frame	ENST00000327813	ENST00000325157		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
5CDS-intron	ENST00000327813	ENST00000490326		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
In-frame	ENST00000407188	ENST00000325157		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
5CDS-intron	ENST00000407188	ENST00000490326		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
intron-3CDS	ENST00000479755	ENST00000325157		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
intron-intron	ENST00000479755	ENST00000490326		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	KREMEN1	chr22	29494941	+	ENTHD1	chr22	40231963	-
5CDS-intron	ENST00000341547	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000341547	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000341547	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000357063	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000357063	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000357063	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000377534	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000377534	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000377534	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000321797	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000321797	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000321797	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000526202	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000526202	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000526202	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000465261	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000465261	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000465261	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
intron-intron	ENST00000605961	ENST00000495013		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
intron-intron	ENST00000605961	ENST00000258648		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
intron-5UTR	ENST00000605961	ENST00000378586		TCGA	RV	LUAD	TCGA-73-4658-01A	LMO7	chr13	76398009	+	MED4	chr13	48664554	-
In-frame	ENST00000535741	ENST00000460779		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000535741	ENST00000467632		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000535741	ENST00000295881		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000535741	ENST00000383673		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000510413	ENST00000460779		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000510413	ENST00000467632		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000510413	ENST00000295881		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000510413	ENST00000383673		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
intron-3CDS	ENST00000503716	ENST00000460779		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
intron-3CDS	ENST00000503716	ENST00000467632		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
intron-3CDS	ENST00000503716	ENST00000295881		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
intron-3CDS	ENST00000503716	ENST00000383673		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000357115	ENST00000460779		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000357115	ENST00000467632		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000357115	ENST00000295881		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
In-frame	ENST00000357115	ENST00000383673		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000507224	ENST00000460779		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000507224	ENST00000467632		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000507224	ENST00000295881		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000507224	ENST00000383673		TCGA	RV	LUAD	TCGA-35-5375-01A	LRBA	chr4	151749332	-	DRD3	chr3	113847759	-
Frame-shit	ENST00000294304	ENST00000373233		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000294304	ENST00000309279		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000294304	ENST00000373222		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
5CDS-intron	ENST00000294304	ENST00000480022		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
intron-3CDS	ENST00000529481	ENST00000373233		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
intron-intron	ENST00000529481	ENST00000309279		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
intron-intron	ENST00000529481	ENST00000373222		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
intron-intron	ENST00000529481	ENST00000480022		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LRP5	chr11	68131411	+	CHD6	chr20	40086068	-
Frame-shit	ENST00000389794	ENST00000366595		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
Frame-shit	ENST00000389794	ENST00000264187		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
Frame-shit	ENST00000389793	ENST00000366595		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
Frame-shit	ENST00000389793	ENST00000264187		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
3UTR-3CDS	ENST00000536965	ENST00000366595		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
3UTR-3CDS	ENST00000536965	ENST00000264187		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
intron-3CDS	ENST00000473037	ENST00000366595		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
intron-3CDS	ENST00000473037	ENST00000264187		TCGA	RV	LUAD	TCGA-55-7576-01A	LYST	chr1	235933460	-	NID1	chr1	236148805	-
5UTR-3CDS	ENST00000383737	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000395734	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000426837	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000360240	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000439356	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000264724	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000420772	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000441748	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000462206	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000434267	ENST00000434006		TCGA	RV	LUAD	TCGA-99-8028-01A	MAP4	chr3	48130263	-	SPINK8	chr3	48351436	-
5CDS-3UTR	ENST00000373511	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5CDS-3UTR	ENST00000373498	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5CDS-3UTR	ENST00000350766	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5UTR-3UTR	ENST00000373503	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5UTR-3UTR	ENST00000394063	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5CDS-3UTR	ENST00000265960	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5UTR-3UTR	ENST00000373497	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
5CDS-3UTR	ENST00000394060	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
intron-3UTR	ENST00000483937	ENST00000592666		TCGA	RV	LUAD	TCGA-53-7624-01A	MAPKAP1	chr9	128419930	-	UHRF1	chr19	4929234	+
In-frame	ENST00000446044	ENST00000434410		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000446044	ENST00000232854		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000446044	ENST00000455834		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000497283	ENST00000434410		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000497283	ENST00000232854		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000497283	ENST00000455834		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000357955	ENST00000434410		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000357955	ENST00000232854		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
In-frame	ENST00000357955	ENST00000455834		TCGA	RV	LUAD	TCGA-05-4405-01A	MAPKAPK3	chr3	50655215	+	HEMK1	chr3	50609141	+
intron-3CDS	ENST00000405088	ENST00000404826		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
intron-3CDS	ENST00000405088	ENST00000389531		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
intron-intron	ENST00000405088	ENST00000466611		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
intron-3CDS	ENST00000471899	ENST00000404826		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
intron-3CDS	ENST00000471899	ENST00000389531		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
intron-intron	ENST00000471899	ENST00000466611		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
Frame-shit	ENST00000297508	ENST00000404826		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
Frame-shit	ENST00000297508	ENST00000389531		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
5CDS-intron	ENST00000297508	ENST00000466611		TCGA	RV	LUAD	TCGA-86-7955-01A	MICALL2	chr7	1498820	-	SDK1	chr7	3658712	+
In-frame	ENST00000355280	ENST00000538159		TCGA	RV	LUAD	TCGA-38-4632-01A	MINK1	chr17	4736935	+	USO1	chr4	76720775	+
In-frame	ENST00000355280	ENST00000514213		TCGA	RV	LUAD	TCGA-38-4632-01A	MINK1	chr17	4736935	+	USO1	chr4	76720775	+
In-frame	ENST00000347992	ENST00000538159		TCGA	RV	LUAD	TCGA-38-4632-01A	MINK1	chr17	4736935	+	USO1	chr4	76720775	+
In-frame	ENST00000347992	ENST00000514213		TCGA	RV	LUAD	TCGA-38-4632-01A	MINK1	chr17	4736935	+	USO1	chr4	76720775	+
In-frame	ENST00000453408	ENST00000538159		TCGA	RV	LUAD	TCGA-38-4632-01A	MINK1	chr17	4736935	+	USO1	chr4	76720775	+
In-frame	ENST00000453408	ENST00000514213		TCGA	RV	LUAD	TCGA-38-4632-01A	MINK1	chr17	4736935	+	USO1	chr4	76720775	+
In-frame	ENST00000280379	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000280379	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000280379	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000280379	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000280379	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393632	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393632	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393632	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000393632	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000393632	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393630	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393630	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393630	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000393630	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000393630	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000546600	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000546600	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000546600	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000546600	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000546600	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000552738	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000552738	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000552738	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000552738	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000552738	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393629	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393629	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000393629	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000393629	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000393629	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000552115	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000552115	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000552115	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000552115	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
5CDS-intron	ENST00000552115	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
3UTR-3CDS	ENST00000549378	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
3UTR-3CDS	ENST00000549378	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
3UTR-3CDS	ENST00000549378	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
3UTR-intron	ENST00000549378	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
3UTR-intron	ENST00000549378	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
intron-3CDS	ENST00000551397	ENST00000353364		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
intron-3CDS	ENST00000551397	ENST00000280377		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
intron-3CDS	ENST00000551397	ENST00000393654		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
intron-intron	ENST00000551397	ENST00000550632		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
intron-intron	ENST00000551397	ENST00000312635		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	MON2	chr12	62861098	+	USP15	chr12	62783211	+
In-frame	ENST00000261681	ENST00000315266		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
In-frame	ENST00000261681	ENST00000478722		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000261681	ENST00000459628		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000261681	ENST00000543237		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000261681	ENST00000305960		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
In-frame	ENST00000555925	ENST00000315266		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
In-frame	ENST00000555925	ENST00000478722		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000555925	ENST00000459628		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000555925	ENST00000543237		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-intron	ENST00000555925	ENST00000305960		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
5CDS-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-intron	ENST00000554911	ENST00000459628		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-intron	ENST00000554911	ENST00000543237		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-intron	ENST00000554911	ENST00000305960		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-intron	ENST00000556345	ENST00000459628		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-intron	ENST00000556345	ENST00000543237		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-intron	ENST00000556345	ENST00000305960		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
intron-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	MPP5	chr14	67759436	+	GPHN	chr14	67646295	+
Frame-shit	ENST00000337532	ENST00000299563		TCGA	RV	LUAD	TCGA-44-A4SU-01A	MPP7	chr10	28491082	-	RNF169	chr11	74546591	+
Frame-shit	ENST00000375732	ENST00000299563		TCGA	RV	LUAD	TCGA-44-A4SU-01A	MPP7	chr10	28491082	-	RNF169	chr11	74546591	+
Frame-shit	ENST00000540098	ENST00000299563		TCGA	RV	LUAD	TCGA-44-A4SU-01A	MPP7	chr10	28491082	-	RNF169	chr11	74546591	+
Frame-shit	ENST00000375719	ENST00000299563		TCGA	RV	LUAD	TCGA-44-A4SU-01A	MPP7	chr10	28491082	-	RNF169	chr11	74546591	+
intron-3CDS	ENST00000445954	ENST00000299563		TCGA	RV	LUAD	TCGA-44-A4SU-01A	MPP7	chr10	28491082	-	RNF169	chr11	74546591	+
5UTR-3CDS	ENST00000481244	ENST00000299563		TCGA	RV	LUAD	TCGA-44-A4SU-01A	MPP7	chr10	28491082	-	RNF169	chr11	74546591	+
In-frame	ENST00000513610	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
5CDS-intron	ENST00000513610	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
In-frame	ENST00000507288	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
5CDS-intron	ENST00000507288	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000274203	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-intron	ENST00000274203	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000515803	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-intron	ENST00000515803	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000427430	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-intron	ENST00000427430	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000505695	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-intron	ENST00000505695	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000512061	ENST00000265104		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
intron-intron	ENST00000512061	ENST00000504001		TCGA	RV	LUAD	TCGA-05-4396-01A	MYO10	chr5	16877718	-	DNAH5	chr5	13931353	-
5UTR-3CDS	ENST00000369981	ENST00000370010		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000370014		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000447266		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000541192		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369981	ENST00000327284		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369981	ENST00000436928		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000370010		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000370014		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000447266		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000541192		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369985	ENST00000327284		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369985	ENST00000436928		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000370010		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000370014		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000447266		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000541192		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369977	ENST00000327284		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369977	ENST00000436928		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000370010		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000370014		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000447266		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000541192		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000369975	ENST00000327284		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000369975	ENST00000436928		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000541192		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000462633	ENST00000327284		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	LUAD	TCGA-44-4112-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
In-frame	ENST00000281038	ENST00000393324		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000281038	ENST00000359636		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000281038	ENST00000543262		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000281038	ENST00000323418		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000281038	ENST00000525957		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000528850	ENST00000393324		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000528850	ENST00000359636		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000528850	ENST00000543262		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
In-frame	ENST00000528850	ENST00000323418		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000528850	ENST00000525957		TCGA	RV	LUAD	TCGA-78-7148-01A	NARS2	chr11	78176922	-	ME3	chr11	86270865	-
Frame-shit	ENST00000354179	ENST00000329542		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
5CDS-intron	ENST00000354179	ENST00000261961		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
Frame-shit	ENST00000439151	ENST00000329542		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
5CDS-intron	ENST00000439151	ENST00000261961		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
Frame-shit	ENST00000347982	ENST00000329542		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
5CDS-intron	ENST00000347982	ENST00000261961		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
Frame-shit	ENST00000361032	ENST00000329542		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
5CDS-intron	ENST00000361032	ENST00000261961		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
Frame-shit	ENST00000511258	ENST00000329542		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
5CDS-intron	ENST00000511258	ENST00000261961		TCGA	RV	LUAD	TCGA-49-4505-01A	NSD1	chr5	176563031	+	UNC5A	chr5	176289625	+
Frame-shit	ENST00000234040	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
intron-3CDS	ENST00000544142	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
In-frame	ENST00000405260	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
Frame-shit	ENST00000358649	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
intron-3CDS	ENST00000539818	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
intron-3CDS	ENST00000475666	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
Frame-shit	ENST00000403638	ENST00000318407		TCGA	RV	LUAD	TCGA-55-6985-01A	PASK	chr2	242079936	-	BOK	chr2	242509540	+
Frame-shit	ENST00000377532	ENST00000334049		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377532	ENST00000535121		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377532	ENST00000269162		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377532	ENST00000423027		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
5CDS-intron	ENST00000377532	ENST00000590972		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000377532	ENST00000602628		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000361923	ENST00000334049		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000361923	ENST00000535121		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000361923	ENST00000269162		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000361923	ENST00000423027		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
5CDS-intron	ENST00000361923	ENST00000590972		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000361923	ENST00000602628		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377541	ENST00000334049		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377541	ENST00000535121		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377541	ENST00000269162		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
Frame-shit	ENST00000377541	ENST00000423027		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
5CDS-intron	ENST00000377541	ENST00000590972		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
5CDS-5UTR	ENST00000377541	ENST00000602628		TCGA	RV	LUAD	TCGA-44-3918-01A	PER3	chr1	7858733	+	GNAL	chr18	11862394	+
intron-3CDS	ENST00000431992	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000431992	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000431992	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000431992	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000431992	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000431992	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-3CDS	ENST00000373422	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373422	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373422	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373422	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373422	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373422	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-3CDS	ENST00000257118	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000257118	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000257118	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000257118	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000257118	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000257118	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
5UTR-3CDS	ENST00000419414	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
5UTR-intron	ENST00000419414	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
5UTR-intron	ENST00000419414	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
5UTR-intron	ENST00000419414	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
5UTR-intron	ENST00000419414	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
5UTR-intron	ENST00000419414	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-3CDS	ENST00000373416	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373416	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373416	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373416	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373416	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373416	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-3CDS	ENST00000485928	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000485928	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000485928	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000485928	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000485928	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000485928	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-3CDS	ENST00000373418	ENST00000373381		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373418	ENST00000373380		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373418	ENST00000373377		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373418	ENST00000373388		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373418	ENST00000489419		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
intron-intron	ENST00000373418	ENST00000338325		TCGA	RV	LUAD	TCGA-62-A46Y-01A	PHC2	chr1	33895782	-	CSMD2	chr1	33992858	-
In-frame	ENST00000264555	ENST00000270115		TCGA	RV	LUAD	TCGA-55-6971-01A	PHRF1	chr11	601701	+	LRRC56	chr11	551131	+
In-frame	ENST00000413872	ENST00000270115		TCGA	RV	LUAD	TCGA-55-6971-01A	PHRF1	chr11	601701	+	LRRC56	chr11	551131	+
In-frame	ENST00000533464	ENST00000270115		TCGA	RV	LUAD	TCGA-55-6971-01A	PHRF1	chr11	601701	+	LRRC56	chr11	551131	+
In-frame	ENST00000416188	ENST00000270115		TCGA	RV	LUAD	TCGA-55-6971-01A	PHRF1	chr11	601701	+	LRRC56	chr11	551131	+
5UTR-5UTR	ENST00000315367	ENST00000448464		TCGA	RV	LUAD	TCGA-86-7953-01A	PLEKHF2	chr8	96146258	+	TP53INP1	chr8	95953319	-
5UTR-5UTR	ENST00000315367	ENST00000342697		TCGA	RV	LUAD	TCGA-86-7953-01A	PLEKHF2	chr8	96146258	+	TP53INP1	chr8	95953319	-
5UTR-intron	ENST00000315367	ENST00000378776		TCGA	RV	LUAD	TCGA-86-7953-01A	PLEKHF2	chr8	96146258	+	TP53INP1	chr8	95953319	-
intron-5UTR	ENST00000519516	ENST00000448464		TCGA	RV	LUAD	TCGA-86-7953-01A	PLEKHF2	chr8	96146258	+	TP53INP1	chr8	95953319	-
intron-5UTR	ENST00000519516	ENST00000342697		TCGA	RV	LUAD	TCGA-86-7953-01A	PLEKHF2	chr8	96146258	+	TP53INP1	chr8	95953319	-
intron-intron	ENST00000519516	ENST00000378776		TCGA	RV	LUAD	TCGA-86-7953-01A	PLEKHF2	chr8	96146258	+	TP53INP1	chr8	95953319	-
In-frame	ENST00000265849	ENST00000223029		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5CDS-5UTR	ENST00000265849	ENST00000400479		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5CDS-intron	ENST00000265849	ENST00000395236		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
intron-3CDS	ENST00000441476	ENST00000223029		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
intron-5UTR	ENST00000441476	ENST00000400479		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
intron-intron	ENST00000441476	ENST00000395236		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
In-frame	ENST00000382321	ENST00000223029		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5CDS-5UTR	ENST00000382321	ENST00000400479		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5CDS-intron	ENST00000382321	ENST00000395236		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
In-frame	ENST00000406569	ENST00000223029		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5CDS-5UTR	ENST00000406569	ENST00000400479		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5CDS-intron	ENST00000406569	ENST00000395236		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5UTR-3CDS	ENST00000469652	ENST00000223029		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5UTR-5UTR	ENST00000469652	ENST00000400479		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
5UTR-intron	ENST00000469652	ENST00000395236		TCGA	RV	LUAD	TCGA-75-5146-01A	PMS2	chr7	6048628	-	AIMP2	chr7	6054777	+
In-frame	ENST00000371457	ENST00000298532		TCGA	RV	LUAD	TCGA-4B-A93V-01A	PNPLA7	chr9	140379039	-	SNAPC4	chr9	139283043	-
Frame-shit	ENST00000277531	ENST00000298532		TCGA	RV	LUAD	TCGA-4B-A93V-01A	PNPLA7	chr9	140379039	-	SNAPC4	chr9	139283043	-
Frame-shit	ENST00000406427	ENST00000298532		TCGA	RV	LUAD	TCGA-4B-A93V-01A	PNPLA7	chr9	140379039	-	SNAPC4	chr9	139283043	-
intron-3CDS	ENST00000492278	ENST00000298532		TCGA	RV	LUAD	TCGA-4B-A93V-01A	PNPLA7	chr9	140379039	-	SNAPC4	chr9	139283043	-
Frame-shit	ENST00000265421	ENST00000287272		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
Frame-shit	ENST00000265421	ENST00000453357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
Frame-shit	ENST00000265421	ENST00000404895		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
Frame-shit	ENST00000265421	ENST00000420357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
Frame-shit	ENST00000265421	ENST00000416672		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
Frame-shit	ENST00000265421	ENST00000449677		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
5UTR-3CDS	ENST00000538005	ENST00000287272		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
5UTR-3CDS	ENST00000538005	ENST00000453357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
5UTR-3CDS	ENST00000538005	ENST00000404895		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
5UTR-3CDS	ENST00000538005	ENST00000420357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
5UTR-3CDS	ENST00000538005	ENST00000416672		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
5UTR-3CDS	ENST00000538005	ENST00000449677		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000530566	ENST00000287272		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000530566	ENST00000453357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000530566	ENST00000404895		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000530566	ENST00000420357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000530566	ENST00000416672		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000530566	ENST00000449677		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000521492	ENST00000287272		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000521492	ENST00000453357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000521492	ENST00000404895		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000521492	ENST00000420357		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000521492	ENST00000416672		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000521492	ENST00000449677		TCGA	RV	LUAD	TCGA-44-A47G-01A	POLB	chr8	42196203	+	UNC5D	chr8	35606045	+
In-frame	ENST00000438316	ENST00000597275		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000438316	ENST00000496529		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000438316	ENST00000376396		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000438316	ENST00000422185		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000438316	ENST00000603986		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000438316	ENST00000536628		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000466508	ENST00000597275		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000466508	ENST00000496529		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000466508	ENST00000376396		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000466508	ENST00000422185		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000466508	ENST00000603986		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000466508	ENST00000536628		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000055335	ENST00000597275		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000055335	ENST00000496529		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000055335	ENST00000376396		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000055335	ENST00000422185		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000055335	ENST00000603986		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000055335	ENST00000536628		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000495799	ENST00000597275		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000495799	ENST00000496529		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000495799	ENST00000376396		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000495799	ENST00000422185		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000495799	ENST00000603986		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000495799	ENST00000536628		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000376188	ENST00000597275		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000376188	ENST00000496529		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000376188	ENST00000376396		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000376188	ENST00000422185		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000376188	ENST00000603986		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000376188	ENST00000536628		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPP1R3F	chrX	49138526	+	CCDC120	chrX	48921392	+
In-frame	ENST00000358994	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000358994	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000393370	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000337738	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000348141	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000452489	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000357197	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000347048	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000355007	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000423100	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000524946	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000436883	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000414510	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432124	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
Frame-shit	ENST00000435305	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000419582	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000432651	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000435132	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000540326		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000373603		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000373600		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000320246		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000545174		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000394199		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000546191		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000434095	ENST00000539416		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	PPP2R4	chr9	131904831	+	NEK6	chr9	127074788	+
In-frame	ENST00000325748	ENST00000264167		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
5CDS-intron	ENST00000325748	ENST00000409888		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
Frame-shit	ENST00000438687	ENST00000264167		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
5CDS-intron	ENST00000438687	ENST00000409888		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
In-frame	ENST00000487082	ENST00000264167		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
5CDS-intron	ENST00000487082	ENST00000409888		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
In-frame	ENST00000432031	ENST00000264167		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
5CDS-intron	ENST00000432031	ENST00000409888		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
intron-3CDS	ENST00000470200	ENST00000264167		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
intron-intron	ENST00000470200	ENST00000409888		TCGA	RV	LUAD	TCGA-44-7670-01A	PRKRA	chr2	179300872	-	AGPS	chr2	178305693	+
Frame-shit	ENST00000378572	ENST00000378825		TCGA	RV	LUAD	TCGA-49-AAR0-01A	PRPF18	chr10	13629152	+	CCDC3	chr10	12940679	-
In-frame	ENST00000378572	ENST00000378839		TCGA	RV	LUAD	TCGA-49-AAR0-01A	PRPF18	chr10	13629152	+	CCDC3	chr10	12940679	-
intron-intron	ENST00000421748	ENST00000405008		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000421748	ENST00000402114		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000421748	ENST00000394754		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000421748	ENST00000309827		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000421748	ENST00000394751		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-3UTR	ENST00000421748	ENST00000463040		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
5CDS-intron	ENST00000404125	ENST00000405008		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
5CDS-intron	ENST00000404125	ENST00000402114		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
5CDS-intron	ENST00000404125	ENST00000394754		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
5CDS-intron	ENST00000404125	ENST00000309827		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
5CDS-intron	ENST00000404125	ENST00000394751		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
5CDS-3UTR	ENST00000404125	ENST00000463040		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000476586	ENST00000405008		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000476586	ENST00000402114		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000476586	ENST00000394754		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000476586	ENST00000309827		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-intron	ENST00000476586	ENST00000394751		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
intron-3UTR	ENST00000476586	ENST00000463040		TCGA	RV	LUAD	TCGA-91-6848-01A	PSME4	chr2	54197680	-	STON1-GTF2A1L	chr2	49003419	+
In-frame	ENST00000517309	ENST00000522684		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
In-frame	ENST00000517309	ENST00000535192		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000519465		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000517887		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000521059		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000395218		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000538769		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000340930		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000519419		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000430260		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000519881		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000520892		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000519635		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000517712		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000522950		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000517309	ENST00000520151		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
In-frame	ENST00000455950	ENST00000522684		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
In-frame	ENST00000455950	ENST00000535192		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000519465		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000517887		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000521059		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000395218		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000538769		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000340930		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000519419		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000430260		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000519881		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000520892		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000519635		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000517712		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000522950		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000455950	ENST00000520151		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-3CDS	ENST00000518776	ENST00000522684		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-3CDS	ENST00000518776	ENST00000535192		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000519465		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000517887		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000521059		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000395218		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000538769		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000340930		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000519419		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000430260		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000519881		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000520892		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000519635		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000517712		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000522950		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
intron-intron	ENST00000518776	ENST00000520151		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
In-frame	ENST00000522072	ENST00000522684		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
In-frame	ENST00000522072	ENST00000535192		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000519465		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000517887		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000521059		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000395218		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000538769		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000340930		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000519419		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000430260		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000519881		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000520892		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000519635		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000517712		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000522950		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5CDS-intron	ENST00000522072	ENST00000520151		TCGA	RV	LUAD	TCGA-38-6178-01A	PTDSS1	chr8	97321850	+	PTK2	chr8	141840625	-
5UTR-3CDS	ENST00000522684	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000522684	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000522684	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000522684	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-intron	ENST00000522684	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000535192	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000535192	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000535192	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000535192	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000535192	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519465	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519465	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519465	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519465	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000519465	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517887	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517887	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517887	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517887	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000517887	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000521059	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000521059	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000521059	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000521059	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-intron	ENST00000521059	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000395218	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000395218	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000395218	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000395218	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-intron	ENST00000395218	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000538769	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000538769	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000538769	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000538769	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000538769	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000340930	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000340930	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000340930	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000340930	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-intron	ENST00000340930	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519419	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519419	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519419	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519419	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000519419	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000430260	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000430260	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000430260	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000430260	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000430260	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000519881	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000519881	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000519881	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-3CDS	ENST00000519881	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
5UTR-intron	ENST00000519881	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520892	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520892	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520892	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520892	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000520892	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519635	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519635	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519635	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000519635	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000519635	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517712	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517712	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517712	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000517712	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000517712	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000522950	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000522950	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000522950	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000522950	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000522950	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520151	ENST00000519067		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520151	ENST00000433583		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520151	ENST00000517878		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-3CDS	ENST00000520151	ENST00000024061		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
intron-intron	ENST00000520151	ENST00000521804		TCGA	RV	LUAD	TCGA-86-8279-01A	PTK2	chr8	142011224	-	SLC45A4	chr8	142231864	-
Frame-shit	ENST00000373184	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000373184	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373184	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373184	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373184	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373184	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373184	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373184	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
Frame-shit	ENST00000373187	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000373187	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373187	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373187	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373187	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373187	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373187	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373187	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
Frame-shit	ENST00000356100	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000356100	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000356100	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000356100	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000356100	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000356100	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000356100	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000356100	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
Frame-shit	ENST00000373190	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000373190	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373190	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373190	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373190	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373190	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373190	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373190	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
Frame-shit	ENST00000373193	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000373193	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373193	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373193	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373193	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373193	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373193	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373193	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
Frame-shit	ENST00000373198	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000373198	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373198	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373198	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373198	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373198	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373198	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373198	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
Frame-shit	ENST00000373201	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-3UTR	ENST00000373201	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373201	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373201	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373201	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373201	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373201	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
5CDS-5UTR	ENST00000373201	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000485499	ENST00000409018		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-3UTR	ENST00000485499	ENST00000492815		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000485499	ENST00000409014		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000485499	ENST00000409675		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000485499	ENST00000409949		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000485499	ENST00000409242		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000485499	ENST00000312994		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-5UTR	ENST00000485499	ENST00000449989		TCGA	RV	LUAD	TCGA-55-8206-01A	PTPRT	chr20	41385102	-	EXD2	chr14	69695533	+
intron-3CDS	ENST00000458477	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-intron	ENST00000458477	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
In-frame	ENST00000228307	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
5CDS-intron	ENST00000228307	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
In-frame	ENST00000424649	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
5CDS-intron	ENST00000424649	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-3CDS	ENST00000397506	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-intron	ENST00000397506	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-3CDS	ENST00000536957	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-intron	ENST00000536957	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
In-frame	ENST00000267257	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
5CDS-intron	ENST00000267257	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-3CDS	ENST00000538144	ENST00000257552		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
intron-intron	ENST00000538144	ENST00000546622		TCGA	RV	LUAD	TCGA-55-7570-01A	PXN	chr12	120703420	-	MSI1	chr12	120802558	-
Frame-shit	ENST00000275262	ENST00000337019		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000275262	ENST00000366889		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000275262	ENST00000366888		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000275262	ENST00000542669		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000392127	ENST00000337019		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000392127	ENST00000366889		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000392127	ENST00000366888		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000392127	ENST00000542669		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000453779	ENST00000337019		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000453779	ENST00000366889		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000453779	ENST00000366888		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000453779	ENST00000542669		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361752	ENST00000337019		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361752	ENST00000366889		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361752	ENST00000366888		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361752	ENST00000542669		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361195	ENST00000337019		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361195	ENST00000366889		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361195	ENST00000366888		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361195	ENST00000542669		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000424802	ENST00000337019		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000424802	ENST00000366889		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000424802	ENST00000366888		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000424802	ENST00000542669		TCGA	RV	LUAD	TCGA-55-8301-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5UTR-3CDS	ENST00000251849	ENST00000285021		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
5UTR-3CDS	ENST00000251849	ENST00000449060		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
5UTR-3CDS	ENST00000442415	ENST00000285021		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
5UTR-3CDS	ENST00000442415	ENST00000449060		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
intron-3CDS	ENST00000534997	ENST00000285021		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
intron-3CDS	ENST00000534997	ENST00000449060		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
5UTR-3CDS	ENST00000542177	ENST00000285021		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
5UTR-3CDS	ENST00000542177	ENST00000449060		TCGA	RV	LUAD	TCGA-86-A456-01A	RAF1	chr3	12705312	-	XPC	chr3	14189501	-
5UTR-3CDS	ENST00000344041	ENST00000339996		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
5UTR-5UTR	ENST00000344041	ENST00000413714		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
intron-3CDS	ENST00000475788	ENST00000339996		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
intron-5UTR	ENST00000475788	ENST00000413714		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
In-frame	ENST00000405243	ENST00000339996		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
5CDS-5UTR	ENST00000405243	ENST00000413714		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
intron-3CDS	ENST00000401957	ENST00000339996		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
intron-5UTR	ENST00000401957	ENST00000413714		TCGA	RV	LUAD	TCGA-44-3918-01A	RAPGEF5	chr7	22396449	-	TMEM8C	chr9	136385410	-
5UTR-5UTR	ENST00000337907	ENST00000377424		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-intron	ENST00000337907	ENST00000536305		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-intron	ENST00000337907	ENST00000535586		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-5UTR	ENST00000337907	ENST00000377414		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000377464	ENST00000377424		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000377464	ENST00000536305		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000377464	ENST00000535586		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000377464	ENST00000377414		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000400907	ENST00000377424		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000400907	ENST00000536305		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000400907	ENST00000535586		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000400907	ENST00000377414		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-5UTR	ENST00000400908	ENST00000377424		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-intron	ENST00000400908	ENST00000536305		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-intron	ENST00000400908	ENST00000535586		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
5UTR-5UTR	ENST00000400908	ENST00000377414		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000476556	ENST00000377424		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000476556	ENST00000536305		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000476556	ENST00000535586		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000476556	ENST00000377414		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000460659	ENST00000377424		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000460659	ENST00000536305		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-intron	ENST00000460659	ENST00000535586		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
intron-5UTR	ENST00000460659	ENST00000377414		TCGA	RV	LUAD	TCGA-55-7576-01A	RERE	chr1	8877219	-	SLC2A5	chr1	9129653	-
Frame-shit	ENST00000361070	ENST00000355870		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000361070	ENST00000433467		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000361070	ENST00000354639		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000361070	ENST00000428484		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
5CDS-intron	ENST00000361070	ENST00000405627		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000571750	ENST00000355870		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000571750	ENST00000433467		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000571750	ENST00000354639		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
Frame-shit	ENST00000571750	ENST00000428484		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
5CDS-intron	ENST00000571750	ENST00000405627		TCGA	RV	LUAD	TCGA-44-5645-01A	RFWD3	chr16	74694830	-	STK31	chr7	23757100	+
In-frame	ENST00000341307	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000341307	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000341307	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000356000	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000356000	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000356000	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
3UTR-3CDS	ENST00000538995	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
3UTR-3CDS	ENST00000538995	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
3UTR-3CDS	ENST00000538995	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000377819	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000377819	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000377819	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000339997	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000339997	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000339997	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000540798	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000540798	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000540798	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000537981	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000537981	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000537981	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000354497	ENST00000540857		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000354497	ENST00000539221		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
In-frame	ENST00000354497	ENST00000301790		TCGA	RV	LUAD	TCGA-91-6831-01A	RTN3	chr11	63449250	+	HRASLS5	chr11	63233844	-
5CDS-5UTR	ENST00000313050	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313050	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-5UTR	ENST00000467838	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000467838	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-5UTR	ENST00000371706	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000371706	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-5UTR	ENST00000313084	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
5CDS-intron	ENST00000313084	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-5UTR	ENST00000290037	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000290037	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-5UTR	ENST00000431893	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000431893	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-5UTR	ENST00000398335	ENST00000377671		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000396026		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000402618		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000401790		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000538547		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000535822		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000316358		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
intron-intron	ENST00000398335	ENST00000462170		TCGA	RV	LUAD	TCGA-44-7671-01A	SEC16A	chr9	139334553	-	ZNF133	chr20	18278933	+
Frame-shit	ENST00000537403	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000537403	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
5CDS-intron	ENST00000537403	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000307712	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000307712	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
5CDS-intron	ENST00000307712	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000536508	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000536508	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
5CDS-intron	ENST00000536508	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000545328	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
Frame-shit	ENST00000545328	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
5CDS-intron	ENST00000545328	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000553925	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000553925	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-intron	ENST00000553925	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000548032	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000548032	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-intron	ENST00000548032	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000557280	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000557280	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-intron	ENST00000557280	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000553970	ENST00000330149		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-3CDS	ENST00000553970	ENST00000347691		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
intron-intron	ENST00000553970	ENST00000557764		TCGA	RV	LUAD	TCGA-49-4505-01A	SEC23A	chr14	39509936	-	TRAPPC6B	chr14	39628754	-
5CDS-5UTR	ENST00000336735	ENST00000313349		TCGA	RV	LUAD	TCGA-67-6217-01A	SEL1L	chr14	81993077	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000336735	ENST00000476805		TCGA	RV	LUAD	TCGA-67-6217-01A	SEL1L	chr14	81993077	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000555824	ENST00000313349		TCGA	RV	LUAD	TCGA-67-6217-01A	SEL1L	chr14	81993077	-	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000555824	ENST00000476805		TCGA	RV	LUAD	TCGA-67-6217-01A	SEL1L	chr14	81993077	-	SERTAD2	chr2	64864009	-
5UTR-5UTR	ENST00000379122	ENST00000268154		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
5UTR-intron	ENST00000379122	ENST00000560908		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
5UTR-5UTR	ENST00000332496	ENST00000268154		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
5UTR-intron	ENST00000332496	ENST00000560908		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000560263	ENST00000268154		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000560263	ENST00000560908		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000411539	ENST00000268154		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000411539	ENST00000560908		TCGA	RV	LUAD	TCGA-99-8033-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90610342	+
In-frame	ENST00000382771	ENST00000262150		TCGA	RV	LUAD	TCGA-49-4490-01A	SERPINB5	chr18	61151829	+	CDH19	chr18	64178922	-
5CDS-intron	ENST00000382771	ENST00000540086		TCGA	RV	LUAD	TCGA-49-4490-01A	SERPINB5	chr18	61151829	+	CDH19	chr18	64178922	-
In-frame	ENST00000489441	ENST00000262150		TCGA	RV	LUAD	TCGA-49-4490-01A	SERPINB5	chr18	61151829	+	CDH19	chr18	64178922	-
5CDS-intron	ENST00000489441	ENST00000540086		TCGA	RV	LUAD	TCGA-49-4490-01A	SERPINB5	chr18	61151829	+	CDH19	chr18	64178922	-
intron-3CDS	ENST00000464346	ENST00000262150		TCGA	RV	LUAD	TCGA-49-4490-01A	SERPINB5	chr18	61151829	+	CDH19	chr18	64178922	-
intron-intron	ENST00000464346	ENST00000540086		TCGA	RV	LUAD	TCGA-49-4490-01A	SERPINB5	chr18	61151829	+	CDH19	chr18	64178922	-
In-frame	ENST00000264554	ENST00000078445		TCGA	RV	LUAD	TCGA-44-8119-01A	SHC2	chr19	460529	-	CREB3L3	chr19	4164500	+
In-frame	ENST00000264554	ENST00000252587		TCGA	RV	LUAD	TCGA-44-8119-01A	SHC2	chr19	460529	-	CREB3L3	chr19	4164500	+
In-frame	ENST00000264554	ENST00000595923		TCGA	RV	LUAD	TCGA-44-8119-01A	SHC2	chr19	460529	-	CREB3L3	chr19	4164500	+
In-frame	ENST00000264554	ENST00000602257		TCGA	RV	LUAD	TCGA-44-8119-01A	SHC2	chr19	460529	-	CREB3L3	chr19	4164500	+
In-frame	ENST00000264554	ENST00000602147		TCGA	RV	LUAD	TCGA-44-8119-01A	SHC2	chr19	460529	-	CREB3L3	chr19	4164500	+
5CDS-intron	ENST00000296043	ENST00000510197		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
5CDS-intron	ENST00000296043	ENST00000339906		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
5CDS-intron	ENST00000296043	ENST00000515604		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
5CDS-intron	ENST00000296043	ENST00000424749		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
5CDS-3UTR	ENST00000296043	ENST00000515589		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
3UTR-intron	ENST00000473602	ENST00000510197		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
3UTR-intron	ENST00000473602	ENST00000339906		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
3UTR-intron	ENST00000473602	ENST00000515604		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
3UTR-intron	ENST00000473602	ENST00000424749		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
3UTR-3UTR	ENST00000473602	ENST00000515589		TCGA	RV	LUAD	TCGA-38-4630-01A	SHROOM3	chr4	77631440	+	FAM47E	chr4	77177331	+
5CDS-5UTR	ENST00000336915	ENST00000472863		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000336915	ENST00000498678		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000336915	ENST00000460160		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000336915	ENST00000476342		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000336915	ENST00000552000		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000336915	ENST00000470495		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000336915	ENST00000311626		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000336915	ENST00000490677		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000336915	ENST00000485909		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000336915	ENST00000489475		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000336915	ENST00000465120		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000472863		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000498678		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000460160		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000584924	ENST00000476342		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000584924	ENST00000552000		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000584924	ENST00000470495		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000311626		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-intron	ENST00000584924	ENST00000490677		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000485909		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000489475		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
5CDS-5UTR	ENST00000584924	ENST00000465120		TCGA	RV	LUAD	TCGA-38-4630-01A	SKAP1	chr17	46441151	-	HOXB3	chr17	46632980	-
In-frame	ENST00000555449	ENST00000536774		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000555449	ENST00000327441		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000555449	ENST00000539062		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000555449	ENST00000556451		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000555449	ENST00000396294		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000555449	ENST00000545536		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000555449	ENST00000537471		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
5CDS-intron	ENST00000555449	ENST00000539174		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000536774		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000327441		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000539062		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000556451		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000396294		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000545536		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000331299	ENST00000537471		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
5CDS-intron	ENST00000331299	ENST00000539174		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000536774		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000327441		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000539062		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000556451		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000396294		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000545536		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-3CDS	ENST00000557611	ENST00000537471		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
intron-intron	ENST00000557611	ENST00000539174		TCGA	RV	LUAD	TCGA-78-7161-01A	SLC25A21	chr14	37194775	-	MIPOL1	chr14	37892060	+
5UTR-3CDS	ENST00000219343	ENST00000399770		TCGA	RV	LUAD	TCGA-38-4629-01A	SLC7A6	chr16	68300624	+	GRXCR1	chr4	43022371	+
5UTR-3CDS	ENST00000566454	ENST00000399770		TCGA	RV	LUAD	TCGA-38-4629-01A	SLC7A6	chr16	68300624	+	GRXCR1	chr4	43022371	+
Frame-shit	ENST00000566228	ENST00000409790		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000566228	ENST00000409552		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000566228	ENST00000465491		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000566228	ENST00000381822		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
Frame-shit	ENST00000323433	ENST00000409790		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000323433	ENST00000409552		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000323433	ENST00000465491		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000323433	ENST00000381822		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
Frame-shit	ENST00000306030	ENST00000409790		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000306030	ENST00000409552		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000306030	ENST00000465491		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
5CDS-intron	ENST00000306030	ENST00000381822		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
intron-3CDS	ENST00000568359	ENST00000409790		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
intron-intron	ENST00000568359	ENST00000409552		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
intron-intron	ENST00000568359	ENST00000465491		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
intron-intron	ENST00000568359	ENST00000381822		TCGA	RV	LUAD	TCGA-97-7547-01A	SNX29	chr16	12571716	+	CLEC16A	chr16	11272192	+
Frame-shit	ENST00000389722	ENST00000267512		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
In-frame	ENST00000389722	ENST00000533601		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000389722	ENST00000436278		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000389722	ENST00000426039		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
Frame-shit	ENST00000556626	ENST00000267512		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
In-frame	ENST00000556626	ENST00000533601		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000556626	ENST00000436278		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000556626	ENST00000426039		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
Frame-shit	ENST00000389721	ENST00000267512		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
In-frame	ENST00000389721	ENST00000533601		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000389721	ENST00000436278		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000389721	ENST00000426039		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
Frame-shit	ENST00000542895	ENST00000267512		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
In-frame	ENST00000542895	ENST00000533601		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000542895	ENST00000436278		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000542895	ENST00000426039		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
Frame-shit	ENST00000389720	ENST00000267512		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
In-frame	ENST00000389720	ENST00000533601		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000389720	ENST00000436278		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-3UTR	ENST00000389720	ENST00000426039		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
intron-3CDS	ENST00000342835	ENST00000267512		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
intron-3CDS	ENST00000342835	ENST00000533601		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
intron-3UTR	ENST00000342835	ENST00000436278		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
intron-3UTR	ENST00000342835	ENST00000426039		TCGA	RV	LUAD	TCGA-55-8205-01A	SPTB	chr14	65263275	-	RAB15	chr14	65415451	-
5CDS-intron	ENST00000393651	ENST00000356362		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000393651	ENST00000469408		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000357311	ENST00000356362		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000357311	ENST00000469408		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000489828	ENST00000356362		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000489828	ENST00000469408		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000493638	ENST00000356362		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000493638	ENST00000469408		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
Frame-shit	ENST00000169298	ENST00000287611		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000169298	ENST00000265023		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000169298	ENST00000447445		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
intron-3CDS	ENST00000457772	ENST00000287611		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
intron-intron	ENST00000457772	ENST00000265023		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
intron-intron	ENST00000457772	ENST00000447445		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
Frame-shit	ENST00000448044	ENST00000287611		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000448044	ENST00000265023		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000448044	ENST00000447445		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
intron-3CDS	ENST00000487031	ENST00000287611		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
intron-intron	ENST00000487031	ENST00000265023		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
intron-intron	ENST00000487031	ENST00000447445		TCGA	RV	LUAD	TCGA-55-6972-01A	ST6GAL1	chr3	186761098	+	KNG1	chr3	186461494	+
5CDS-intron	ENST00000355528	ENST00000537330		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000355528	ENST00000570891		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000355528	ENST00000306801		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000355528	ENST00000544334		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-3UTR	ENST00000355528	ENST00000575542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5UTR-intron	ENST00000397466	ENST00000537330		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5UTR-intron	ENST00000397466	ENST00000570891		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5UTR-intron	ENST00000397466	ENST00000306801		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5UTR-intron	ENST00000397466	ENST00000544334		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5UTR-3UTR	ENST00000397466	ENST00000575542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000539345	ENST00000537330		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000539345	ENST00000570891		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000539345	ENST00000306801		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-intron	ENST00000539345	ENST00000544334		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
5CDS-3UTR	ENST00000539345	ENST00000575542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
intron-intron	ENST00000576691	ENST00000537330		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
intron-intron	ENST00000576691	ENST00000570891		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
intron-intron	ENST00000576691	ENST00000306801		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
intron-intron	ENST00000576691	ENST00000544334		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
intron-3UTR	ENST00000576691	ENST00000575542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TBCD	chr17	80755678	+	RPTOR	chr17	78931424	+
Frame-shit	ENST00000282111	ENST00000389394		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
Frame-shit	ENST00000282111	ENST00000237449		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
5CDS-intron	ENST00000282111	ENST00000398278		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
5CDS-intron	ENST00000282111	ENST00000468661		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
5CDS-intron	ENST00000282111	ENST00000602588		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
3UTR-3CDS	ENST00000494519	ENST00000389394		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
3UTR-3CDS	ENST00000494519	ENST00000237449		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
3UTR-intron	ENST00000494519	ENST00000398278		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
3UTR-intron	ENST00000494519	ENST00000468661		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
3UTR-intron	ENST00000494519	ENST00000602588		TCGA	RV	LUAD	TCGA-55-6972-01A	TCF7L1	chr2	85361573	+	DNAH6	chr2	84972204	+
5UTR-3CDS	ENST00000381501	ENST00000400546		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
5UTR-3CDS	ENST00000381501	ENST00000284894		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
5UTR-3CDS	ENST00000381501	ENST00000535285		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
5UTR-intron	ENST00000381501	ENST00000486367		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
intron-3CDS	ENST00000511471	ENST00000400546		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
intron-3CDS	ENST00000511471	ENST00000284894		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
intron-3CDS	ENST00000511471	ENST00000535285		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
intron-intron	ENST00000511471	ENST00000486367		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	TEC	chr4	48271769	-	NCAM2	chr21	22746183	+
Frame-shit	ENST00000295754	ENST00000425241		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000295754	ENST00000323373		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000295754	ENST00000393102		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000295754	ENST00000406272		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
5CDS-intron	ENST00000295754	ENST00000478572		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000359013	ENST00000425241		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000359013	ENST00000323373		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000359013	ENST00000393102		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000359013	ENST00000406272		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
5CDS-intron	ENST00000359013	ENST00000478572		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	TGFBR2	chr3	30648469	+	NR2C2	chr3	15055096	+
Frame-shit	ENST00000370282	ENST00000369717		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
Frame-shit	ENST00000370282	ENST00000369716		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
5CDS-intron	ENST00000370282	ENST00000241356		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
5CDS-intron	ENST00000370282	ENST00000486342		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
intron-3CDS	ENST00000483033	ENST00000369717		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
intron-3CDS	ENST00000483033	ENST00000369716		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
intron-intron	ENST00000483033	ENST00000241356		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
intron-intron	ENST00000483033	ENST00000486342		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
Frame-shit	ENST00000479918	ENST00000369717		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
Frame-shit	ENST00000479918	ENST00000369716		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
5CDS-intron	ENST00000479918	ENST00000241356		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
5CDS-intron	ENST00000479918	ENST00000486342		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
Frame-shit	ENST00000370280	ENST00000369717		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
Frame-shit	ENST00000370280	ENST00000369716		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
5CDS-intron	ENST00000370280	ENST00000241356		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
5CDS-intron	ENST00000370280	ENST00000486342		TCGA	RV	LUAD	TCGA-50-5066-01A	TMED5	chr1	93645611	-	ADORA3	chr1	112028462	-
In-frame	ENST00000422113	ENST00000202677		TCGA	RV	LUAD	TCGA-55-8620-01A	TMEM132D	chr12	130015604	-	RALGAPA2	chr20	20392792	-
5CDS-intron	ENST00000422113	ENST00000495793		TCGA	RV	LUAD	TCGA-55-8620-01A	TMEM132D	chr12	130015604	-	RALGAPA2	chr20	20392792	-
intron-3CDS	ENST00000389441	ENST00000202677		TCGA	RV	LUAD	TCGA-55-8620-01A	TMEM132D	chr12	130015604	-	RALGAPA2	chr20	20392792	-
intron-intron	ENST00000389441	ENST00000495793		TCGA	RV	LUAD	TCGA-55-8620-01A	TMEM132D	chr12	130015604	-	RALGAPA2	chr20	20392792	-
Frame-shit	ENST00000453321	ENST00000220876		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
Frame-shit	ENST00000453321	ENST00000518111		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
Frame-shit	ENST00000453321	ENST00000518491		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
Frame-shit	ENST00000409623	ENST00000220876		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
Frame-shit	ENST00000409623	ENST00000518111		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
Frame-shit	ENST00000409623	ENST00000518491		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
intron-3CDS	ENST00000425545	ENST00000220876		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
intron-3CDS	ENST00000425545	ENST00000518111		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
intron-3CDS	ENST00000425545	ENST00000518491		TCGA	RV	LUAD	TCGA-78-7145-01A	TMEM67	chr8	94815912	+	STMN2	chr8	80577050	+
In-frame	ENST00000283206	ENST00000295408		TCGA	RV	LUAD	TCGA-50-5072-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000421804		TCGA	RV	LUAD	TCGA-50-5072-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000409780		TCGA	RV	LUAD	TCGA-50-5072-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	RV	LUAD	TCGA-50-5072-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	RV	LUAD	TCGA-50-5072-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	RV	LUAD	TCGA-50-5072-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
5UTR-3CDS	ENST00000301923	ENST00000352645		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
5UTR-3CDS	ENST00000301923	ENST00000351589		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000402203	ENST00000352645		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000402203	ENST00000351589		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000454349	ENST00000352645		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000454349	ENST00000351589		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000335727	ENST00000352645		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000335727	ENST00000351589		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000497559	ENST00000352645		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
intron-3CDS	ENST00000497559	ENST00000351589		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40441002	+	ZC3H7B	chr22	41751473	+
Frame-shit	ENST00000311160	ENST00000341056		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000311160	ENST00000396045		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000311160	ENST00000310758		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000311160	ENST00000396040		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000311160	ENST00000442504		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000311160	ENST00000448602		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000311160	ENST00000479447		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
Frame-shit	ENST00000355730	ENST00000341056		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000355730	ENST00000396045		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000355730	ENST00000310758		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000355730	ENST00000396040		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000355730	ENST00000442504		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000355730	ENST00000448602		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000355730	ENST00000479447		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
Frame-shit	ENST00000398879	ENST00000341056		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000398879	ENST00000396045		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000398879	ENST00000310758		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000398879	ENST00000396040		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000398879	ENST00000442504		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000398879	ENST00000448602		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000398879	ENST00000479447		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
Frame-shit	ENST00000442536	ENST00000341056		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000442536	ENST00000396045		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000442536	ENST00000310758		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000442536	ENST00000396040		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000442536	ENST00000442504		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000442536	ENST00000448602		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000442536	ENST00000479447		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
Frame-shit	ENST00000458317	ENST00000341056		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000458317	ENST00000396045		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000458317	ENST00000310758		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000458317	ENST00000396040		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000458317	ENST00000442504		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000458317	ENST00000448602		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000458317	ENST00000479447		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-3CDS	ENST00000474346	ENST00000341056		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000474346	ENST00000396045		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000474346	ENST00000310758		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000474346	ENST00000396040		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000474346	ENST00000442504		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000474346	ENST00000448602		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-intron	ENST00000474346	ENST00000479447		TCGA	RV	LUAD	TCGA-55-8615-01A	TNS3	chr7	47451325	-	ELMO1	chr7	36934622	-
intron-3CDS	ENST00000541110	ENST00000372808		TCGA	RV	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330685	-	GNMT	chr6	42929950	+
intron-3CDS	ENST00000372917	ENST00000372808		TCGA	RV	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330685	-	GNMT	chr6	42929950	+
intron-3CDS	ENST00000372922	ENST00000372808		TCGA	RV	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330685	-	GNMT	chr6	42929950	+
5UTR-3CDS	ENST00000340840	ENST00000372808		TCGA	RV	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330685	-	GNMT	chr6	42929950	+
5UTR-3CDS	ENST00000354325	ENST00000372808		TCGA	RV	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330685	-	GNMT	chr6	42929950	+
Frame-shit	ENST00000447632	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000447632	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000447632	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000413473	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000413473	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000413473	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000262675	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000262675	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000262675	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000451380	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000451380	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000451380	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000371750	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000371750	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000371750	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000371747	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000371747	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000371747	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000262676	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
In-frame	ENST00000262676	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000262676	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000530004	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000530004	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
intron-intron	ENST00000530004	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000534098	ENST00000369409		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000534098	ENST00000369407		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
intron-intron	ENST00000534098	ENST00000482968		TCGA	RV	LUAD	TCGA-55-6972-01A	TTC39A	chr1	51787393	-	PHGDH	chr1	120263793	+
5UTR-3CDS	ENST00000271469	ENST00000462284		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000356290		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000540827		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000258149		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000428863		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000393412		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000258148		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000544561		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000393410		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000393413		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000517852		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000545204		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000350057		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000360430		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000271469	ENST00000299252		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000271469	ENST00000348801		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000271469	ENST00000478070		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000271469	ENST00000544125		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-3CDS	ENST00000367926	ENST00000462284		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000356290		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000540827		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000258149		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000428863		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000393412		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000258148		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000544561		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000393410		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000393413		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000517852		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000545204		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000350057		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000360430		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000367926	ENST00000299252		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000367926	ENST00000348801		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000367926	ENST00000478070		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000367926	ENST00000544125		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-3CDS	ENST00000476240	ENST00000462284		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000356290		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000540827		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000258149		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000428863		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000393412		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000258148		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000544561		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000393410		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000393413		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000517852		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000545204		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000350057		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000360430		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-5UTR	ENST00000476240	ENST00000299252		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-intron	ENST00000476240	ENST00000348801		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-intron	ENST00000476240	ENST00000478070		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
3UTR-intron	ENST00000476240	ENST00000544125		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-3CDS	ENST00000367924	ENST00000462284		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000356290		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000540827		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000258149		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000428863		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000393412		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000258148		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000544561		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000393410		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000393413		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000517852		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000545204		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000350057		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000360430		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367924	ENST00000299252		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-intron	ENST00000367924	ENST00000348801		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-intron	ENST00000367924	ENST00000478070		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-intron	ENST00000367924	ENST00000544125		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-3CDS	ENST00000367925	ENST00000462284		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000356290		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000540827		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000258149		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000428863		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000393412		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000258148		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000544561		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000393410		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000393413		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000517852		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000545204		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000350057		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000360430		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000367925	ENST00000299252		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-intron	ENST00000367925	ENST00000348801		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-intron	ENST00000367925	ENST00000478070		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
intron-intron	ENST00000367925	ENST00000544125		TCGA	RV	LUAD	TCGA-05-4382-01A	UAP1	chr1	162531567	+	MDM2	chr12	69202988	+
In-frame	ENST00000449054	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5CDS-5UTR	ENST00000449054	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
In-frame	ENST00000379238	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5CDS-5UTR	ENST00000379238	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
Frame-shit	ENST00000360802	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5CDS-5UTR	ENST00000360802	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
intron-3CDS	ENST00000379239	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
intron-5UTR	ENST00000379239	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5UTR-3CDS	ENST00000539807	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5UTR-5UTR	ENST00000539807	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
Frame-shit	ENST00000418786	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5CDS-5UTR	ENST00000418786	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
intron-3CDS	ENST00000379225	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
intron-5UTR	ENST00000379225	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
intron-3CDS	ENST00000379235	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
intron-5UTR	ENST00000379235	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5UTR-3CDS	ENST00000480885	ENST00000361264		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
5UTR-5UTR	ENST00000480885	ENST00000463286		TCGA	RV	LUAD	TCGA-MN-A4N4-01A	UBAP2	chr9	34017048	-	DCAF12	chr9	34107563	-
In-frame	ENST00000376747	ENST00000375820		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000376747	ENST00000543140		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000376747	ENST00000467182		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000376714	ENST00000375820		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000376714	ENST00000543140		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000376714	ENST00000467182		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000397618	ENST00000375820		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000397618	ENST00000543140		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000397618	ENST00000467182		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5UTR-3CDS	ENST00000467305	ENST00000375820		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5UTR-3CDS	ENST00000467305	ENST00000543140		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5UTR-intron	ENST00000467305	ENST00000467182		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000376712	ENST00000375820		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000376712	ENST00000543140		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
5CDS-intron	ENST00000376712	ENST00000467182		TCGA	RV	LUAD	TCGA-69-7979-01A	UGGT2	chr13	96665561	-	COL4A1	chr13	110895081	-
In-frame	ENST00000394275	ENST00000355112		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
In-frame	ENST00000394275	ENST00000560509		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
5CDS-intron	ENST00000394275	ENST00000560136		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
In-frame	ENST00000418476	ENST00000355112		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
In-frame	ENST00000418476	ENST00000560509		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
5CDS-intron	ENST00000418476	ENST00000560136		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
3UTR-3CDS	ENST00000553671	ENST00000355112		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
3UTR-3CDS	ENST00000553671	ENST00000560509		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
3UTR-intron	ENST00000553671	ENST00000560136		TCGA	RV	LUAD	TCGA-49-AAQV-01A	UNC45A	chr15	91483703	+	BLM	chr15	91358332	+
Frame-shit	ENST00000409975	ENST00000337288		TCGA	RV	LUAD	TCGA-55-7907-01A	UNC50	chr2	99227358	+	STARD7	chr2	96859090	-
5CDS-5UTR	ENST00000409975	ENST00000462501		TCGA	RV	LUAD	TCGA-55-7907-01A	UNC50	chr2	99227358	+	STARD7	chr2	96859090	-
Frame-shit	ENST00000357765	ENST00000337288		TCGA	RV	LUAD	TCGA-55-7907-01A	UNC50	chr2	99227358	+	STARD7	chr2	96859090	-
5CDS-5UTR	ENST00000357765	ENST00000462501		TCGA	RV	LUAD	TCGA-55-7907-01A	UNC50	chr2	99227358	+	STARD7	chr2	96859090	-
Frame-shit	ENST00000409347	ENST00000337288		TCGA	RV	LUAD	TCGA-55-7907-01A	UNC50	chr2	99227358	+	STARD7	chr2	96859090	-
5CDS-5UTR	ENST00000409347	ENST00000462501		TCGA	RV	LUAD	TCGA-55-7907-01A	UNC50	chr2	99227358	+	STARD7	chr2	96859090	-
Frame-shit	ENST00000353364	ENST00000393240		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000353364	ENST00000261205		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000353364	ENST00000457153		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000353364	ENST00000552744		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
5CDS-intron	ENST00000353364	ENST00000549454		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000280377	ENST00000393240		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000280377	ENST00000261205		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000280377	ENST00000457153		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000280377	ENST00000552744		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
5CDS-intron	ENST00000280377	ENST00000549454		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000393654	ENST00000393240		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000393654	ENST00000261205		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000393654	ENST00000457153		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000393654	ENST00000552744		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
5CDS-intron	ENST00000393654	ENST00000549454		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
3UTR-3CDS	ENST00000550632	ENST00000393240		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
3UTR-3CDS	ENST00000550632	ENST00000261205		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
3UTR-3CDS	ENST00000550632	ENST00000457153		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
3UTR-3CDS	ENST00000550632	ENST00000552744		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
3UTR-intron	ENST00000550632	ENST00000549454		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000312635	ENST00000393240		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000312635	ENST00000261205		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000312635	ENST00000457153		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
Frame-shit	ENST00000312635	ENST00000552744		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
5CDS-intron	ENST00000312635	ENST00000549454		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	USP15	chr12	62654284	+	SYT1	chr12	79679567	+
In-frame	ENST00000238497	ENST00000369503		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
In-frame	ENST00000238497	ENST00000369502		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
5CDS-intron	ENST00000238497	ENST00000481127		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
In-frame	ENST00000591519	ENST00000369503		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
In-frame	ENST00000591519	ENST00000369502		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
5CDS-intron	ENST00000591519	ENST00000481127		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
intron-3CDS	ENST00000591383	ENST00000369503		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
intron-3CDS	ENST00000591383	ENST00000369502		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
intron-intron	ENST00000591383	ENST00000481127		TCGA	RV	LUAD	TCGA-44-A4SS-01A	VPS4B	chr18	61089466	-	SLC22A15	chr1	116562203	+
intron-3CDS	ENST00000477723	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
intron-intron	ENST00000477723	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
intron-intron	ENST00000477723	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
intron-intron	ENST00000477723	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
intron-intron	ENST00000477723	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000477723	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
In-frame	ENST00000261015	ENST00000406610		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000261015	ENST00000462231		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000261015	ENST00000349953		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000261015	ENST00000358768		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000261015	ENST00000351153		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000261015	ENST00000488622		TCGA	RV	LUAD	TCGA-78-7539-01A	WDR12	chr2	203776159	-	PARD3B	chr2	206418048	+
In-frame	ENST00000549091	ENST00000535977		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000549091	ENST00000539661		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000549091	ENST00000538492		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000549091	ENST00000248139		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000293879	ENST00000535977		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000293879	ENST00000539661		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000293879	ENST00000538492		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
In-frame	ENST00000293879	ENST00000248139		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547543	ENST00000535977		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547543	ENST00000539661		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547543	ENST00000538492		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547543	ENST00000248139		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547944	ENST00000535977		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547944	ENST00000539661		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547944	ENST00000538492		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000547944	ENST00000248139		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000315764	ENST00000535977		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000315764	ENST00000539661		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000315764	ENST00000538492		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
intron-3CDS	ENST00000315764	ENST00000248139		TCGA	RV	LUAD	TCGA-49-6744-01A	WDR90	chr16	712059	+	RAB40C	chr16	667208	+
Frame-shit	ENST00000264951	ENST00000306156		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
5CDS-intron	ENST00000264951	ENST00000467135		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
5CDS-intron	ENST00000264951	ENST00000394874		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
Frame-shit	ENST00000392981	ENST00000306156		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
5CDS-intron	ENST00000392981	ENST00000467135		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
5CDS-intron	ENST00000392981	ENST00000394874		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-3CDS	ENST00000463916	ENST00000306156		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-intron	ENST00000463916	ENST00000467135		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-intron	ENST00000463916	ENST00000394874		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-3CDS	ENST00000544157	ENST00000306156		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-intron	ENST00000544157	ENST00000467135		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-intron	ENST00000544157	ENST00000394874		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-3CDS	ENST00000465074	ENST00000306156		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-intron	ENST00000465074	ENST00000467135		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
intron-intron	ENST00000465074	ENST00000394874		TCGA	RV	LUAD	TCGA-69-7979-01A	XRN1	chr3	142089327	-	PRKCE	chr2	46411874	+
5CDS-5UTR	ENST00000404138	ENST00000358136		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-5UTR	ENST00000404138	ENST00000356315		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000404138	ENST00000496628		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000404138	ENST00000543766		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000404138	ENST00000471923		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000404138	ENST00000543710		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-5UTR	ENST00000375647	ENST00000358136		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-5UTR	ENST00000375647	ENST00000356315		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000375647	ENST00000496628		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000375647	ENST00000543766		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000375647	ENST00000471923		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000375647	ENST00000543710		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-5UTR	ENST00000374651	ENST00000358136		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-5UTR	ENST00000374651	ENST00000356315		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000374651	ENST00000496628		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000374651	ENST00000543766		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000374651	ENST00000471923		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
5CDS-intron	ENST00000374651	ENST00000543710		TCGA	RV	LUAD	TCGA-55-8507-01A	ZBTB40	chr1	22848956	+	VPS13D	chr1	12294248	+
Frame-shit	ENST00000262577	ENST00000368321		TCGA	RV	LUAD	TCGA-38-4630-01A	ZC3H3	chr8	144618427	-	KIAA0907	chr1	155903640	-
Frame-shit	ENST00000262577	ENST00000368320		TCGA	RV	LUAD	TCGA-38-4630-01A	ZC3H3	chr8	144618427	-	KIAA0907	chr1	155903640	-
Frame-shit	ENST00000262577	ENST00000368319		TCGA	RV	LUAD	TCGA-38-4630-01A	ZC3H3	chr8	144618427	-	KIAA0907	chr1	155903640	-
5CDS-5UTR	ENST00000262577	ENST00000482337		TCGA	RV	LUAD	TCGA-38-4630-01A	ZC3H3	chr8	144618427	-	KIAA0907	chr1	155903640	-
5CDS-5UTR	ENST00000358296	ENST00000393029		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358296	ENST00000393028		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358296	ENST00000345425		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000358296	ENST00000393033		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358296	ENST00000591349		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000358296	ENST00000586027		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000305570	ENST00000393029		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-intron	ENST00000305570	ENST00000393028		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-intron	ENST00000305570	ENST00000345425		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000305570	ENST00000393033		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-intron	ENST00000305570	ENST00000591349		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-intron	ENST00000305570	ENST00000586027		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5UTR-5UTR	ENST00000596452	ENST00000393029		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000596452	ENST00000393028		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000596452	ENST00000345425		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5UTR-5UTR	ENST00000596452	ENST00000393033		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000596452	ENST00000591349		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
5UTR-intron	ENST00000596452	ENST00000586027		TCGA	RV	LUAD	TCGA-44-7669-01A	ZNF100	chr19	21948496	-	GIPC1	chr19	14603724	-
intron-3CDS	ENST00000342944	ENST00000259750		TCGA	RV	LUAD	TCGA-44-7671-01A	ZNF254	chr19	24289445	+	TTBK1	chr6	43250465	+
intron-intron	ENST00000342944	ENST00000304139		TCGA	RV	LUAD	TCGA-44-7671-01A	ZNF254	chr19	24289445	+	TTBK1	chr6	43250465	+
Frame-shit	ENST00000339642	ENST00000259750		TCGA	RV	LUAD	TCGA-44-7671-01A	ZNF254	chr19	24289445	+	TTBK1	chr6	43250465	+
5CDS-intron	ENST00000339642	ENST00000304139		TCGA	RV	LUAD	TCGA-44-7671-01A	ZNF254	chr19	24289445	+	TTBK1	chr6	43250465	+
Frame-shit	ENST00000357002	ENST00000259750		TCGA	RV	LUAD	TCGA-44-7671-01A	ZNF254	chr19	24289445	+	TTBK1	chr6	43250465	+
5CDS-intron	ENST00000357002	ENST00000304139		TCGA	RV	LUAD	TCGA-44-7671-01A	ZNF254	chr19	24289445	+	TTBK1	chr6	43250465	+
Frame-shit	ENST00000374126	ENST00000374263		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000374126	ENST00000374270		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000374126	ENST00000374264		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000374126	ENST00000482851		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000288466	ENST00000374263		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000288466	ENST00000374270		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000288466	ENST00000374264		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000288466	ENST00000482851		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000470105	ENST00000374263		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000470105	ENST00000374270		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000470105	ENST00000374264		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
intron-intron	ENST00000470105	ENST00000482851		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF618	chr9	116731440	+	SUSD1	chr9	114804240	-
intron-5UTR	ENST00000464611	ENST00000369733		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-5UTR	ENST00000464611	ENST00000353479		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-intron	ENST00000464611	ENST00000480127		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-intron	ENST00000464611	ENST00000393211		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-5UTR	ENST00000331789	ENST00000369733		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-5UTR	ENST00000331789	ENST00000353479		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-intron	ENST00000331789	ENST00000480127		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
intron-intron	ENST00000331789	ENST00000393211		TCGA	RV	LUAD	TCGA-78-7542-01A	ACTB	chr7	5567255	-	COL17A1	chr10	105845629	-
Frame-shit	ENST00000269143	ENST00000286827		TCGA	RV	LUAD	TCGA-O1-A52J-01A	AFG3L2	chr18	12337340	-	TIAM1	chr21	32503266	-
Frame-shit	ENST00000269143	ENST00000541036		TCGA	RV	LUAD	TCGA-O1-A52J-01A	AFG3L2	chr18	12337340	-	TIAM1	chr21	32503266	-
5CDS-intron	ENST00000269143	ENST00000469412		TCGA	RV	LUAD	TCGA-O1-A52J-01A	AFG3L2	chr18	12337340	-	TIAM1	chr21	32503266	-
Frame-shit	ENST00000369799	ENST00000395089		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
Frame-shit	ENST00000369799	ENST00000354431		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
5CDS-5UTR	ENST00000369799	ENST00000468759		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
5CDS-5UTR	ENST00000369799	ENST00000370909		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
5CDS-intron	ENST00000369799	ENST00000370911		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
3UTR-3CDS	ENST00000475081	ENST00000395089		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
3UTR-3CDS	ENST00000475081	ENST00000354431		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
3UTR-5UTR	ENST00000475081	ENST00000468759		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
3UTR-5UTR	ENST00000475081	ENST00000370909		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
3UTR-intron	ENST00000475081	ENST00000370911		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-3CDS	ENST00000359172	ENST00000395089		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-3CDS	ENST00000359172	ENST00000354431		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-5UTR	ENST00000359172	ENST00000468759		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-5UTR	ENST00000359172	ENST00000370909		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-intron	ENST00000359172	ENST00000370911		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-3CDS	ENST00000393614	ENST00000395089		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-3CDS	ENST00000393614	ENST00000354431		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-5UTR	ENST00000393614	ENST00000468759		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-5UTR	ENST00000393614	ENST00000370909		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
intron-intron	ENST00000393614	ENST00000370911		TCGA	RV	LUAD	TCGA-80-5611-01A	AHCYL1	chr1	110527794	+	LRRIQ3	chr1	74575237	-
Frame-shit	ENST00000506722	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
Frame-shit	ENST00000506722	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
Frame-shit	ENST00000506722	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
5CDS-intron	ENST00000506722	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000394537	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000394537	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000394537	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-intron	ENST00000394537	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000357077	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000357077	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000357077	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-intron	ENST00000357077	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000264366	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000264366	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000264366	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-intron	ENST00000264366	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000509550	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000509550	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000509550	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-intron	ENST00000509550	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000510275	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000510275	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000510275	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-intron	ENST00000510275	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000504887	ENST00000458497		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000504887	ENST00000177648		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-3CDS	ENST00000504887	ENST00000504176		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
intron-intron	ENST00000504887	ENST00000505912		TCGA	RV	LUAD	TCGA-50-6592-01A	ANK2	chr4	113825670	+	ALPK1	chr4	113359640	+
5CDS-intron	ENST00000354546	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000354546	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000354546	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000523714	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000523714	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000523714	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000356496	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000356496	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000356496	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000377751	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000377751	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000377751	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
intron-intron	ENST00000521512	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
intron-intron	ENST00000521512	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
intron-intron	ENST00000521512	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
intron-intron	ENST00000519610	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
intron-intron	ENST00000519610	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
intron-intron	ENST00000519610	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	ANXA6	chr5	150480670	-	UTRN	chr6	144665237	+
5CDS-5UTR	ENST00000291439	ENST00000248041		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000291439	ENST00000326742		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000291439	ENST00000402119		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-intron	ENST00000291439	ENST00000591841		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000541844	ENST00000248041		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000541844	ENST00000326742		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000541844	ENST00000402119		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-intron	ENST00000541844	ENST00000591841		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000590756	ENST00000248041		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000590756	ENST00000326742		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000590756	ENST00000402119		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-intron	ENST00000590756	ENST00000591841		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000429941	ENST00000248041		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000429941	ENST00000326742		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000429941	ENST00000402119		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-intron	ENST00000429941	ENST00000591841		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000444449	ENST00000248041		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000444449	ENST00000326742		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-5UTR	ENST00000444449	ENST00000402119		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
5CDS-intron	ENST00000444449	ENST00000591841		TCGA	RV	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16045219	-
In-frame	ENST00000359373	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
intron-3CDS	ENST00000495878	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
In-frame	ENST00000455638	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
In-frame	ENST00000393605	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
In-frame	ENST00000334211	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
Frame-shit	ENST00000393609	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
In-frame	ENST00000426523	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
In-frame	ENST00000429686	ENST00000301838		TCGA	RV	LUAD	TCGA-44-A4SU-01A	ARAP1	chr11	72412694	-	FADD	chr11	70052239	+
Frame-shit	ENST00000355431	ENST00000551492		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000346562		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000341321		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000548645		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000356141		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000357798		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000547068		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000355431	ENST00000551008		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000355431	ENST00000550662		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000551492		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000346562		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000341321		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000548645		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000356141		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000357798		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000547068		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000348476	ENST00000551008		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000348476	ENST00000550662		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000551492		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000346562		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000341321		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000548645		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000356141		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000357798		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000547068		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000395168	ENST00000551008		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000395168	ENST00000550662		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000551492		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000346562		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000341321		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000548645		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000356141		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000357798		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000547068		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000431317	ENST00000551008		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000431317	ENST00000550662		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000551492		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000346562		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000341321		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000548645		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000356141		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000357798		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000547068		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000553355	ENST00000551008		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
intron-intron	ENST00000553355	ENST00000550662		TCGA	RV	LUAD	TCGA-78-8660-01A	ARID4A	chr14	58766578	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000420843	ENST00000398309		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000376104		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000418306		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000280241		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000543673		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000376106		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000330014		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000537455		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000524982		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000532653		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000531015		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000398301		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000426717		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000404783		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000398304		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000530800		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000420843	ENST00000472545		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000398309		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000376104		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000418306		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000280241		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000543673		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000376106		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000330014		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000537455		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000524982		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000532653		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000531015		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000398301		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000426717		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000404783		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000398304		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000530800		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000393505	ENST00000472545		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000398309		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000376104		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000418306		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000280241		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000543673		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000376106		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000330014		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000537455		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000524982		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000532653		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000531015		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000398301		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000426717		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000404783		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000398304		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000530800		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
5CDS-intron	ENST00000360025	ENST00000472545		TCGA	RV	LUAD	TCGA-93-8067-01A	ARRB1	chr11	75062632	-	DLG2	chr11	84996409	-
Frame-shit	ENST00000317697	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000317697	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000317697	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000317697	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000317697	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000317697	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000317697	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000317697	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000317697	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536549	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536549	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536549	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000536549	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536549	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536549	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536549	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000536549	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000536549	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000537754	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-intron	ENST00000537754	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-intron	ENST00000537754	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536953	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536953	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000536953	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536953	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000536953	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536953	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536953	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000536953	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000536953	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000539528	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000539528	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000539528	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000539528	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000539528	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000539528	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000539528	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000539528	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000539528	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000535055	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000535055	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000535055	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000535055	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000535055	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000535055	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000535055	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000535055	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000535055	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536071	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536071	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000536071	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536071	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
In-frame	ENST00000536071	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536071	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
Frame-shit	ENST00000536071	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000536071	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000536071	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000540782	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-intron	ENST00000540782	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-intron	ENST00000540782	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000395487		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000429094		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000551601		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000452445		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000549027		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000333837		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-3CDS	ENST00000535988	ENST00000437801		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-intron	ENST00000535988	ENST00000547172		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
intron-intron	ENST00000535988	ENST00000548826		TCGA	RV	LUAD	TCGA-86-8279-01A	ASB8	chr12	48544984	-	NELL2	chr12	44902767	-
5CDS-intron	ENST00000356654	ENST00000216297		TCGA	RV	LUAD	TCGA-44-5643-01A	ATN1	chr12	7051482	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000356654	ENST00000555943		TCGA	RV	LUAD	TCGA-44-5643-01A	ATN1	chr12	7051482	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000396684	ENST00000216297		TCGA	RV	LUAD	TCGA-44-5643-01A	ATN1	chr12	7051482	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000396684	ENST00000555943		TCGA	RV	LUAD	TCGA-44-5643-01A	ATN1	chr12	7051482	+	SUPT16H	chr14	21829491	-
5UTR-5UTR	ENST00000244769	ENST00000369582		TCGA	RV	LUAD	TCGA-95-7039-01A	ATXN1	chr6	16658007	-	CGA	chr6	87797925	-
5UTR-5UTR	ENST00000436367	ENST00000369582		TCGA	RV	LUAD	TCGA-95-7039-01A	ATXN1	chr6	16658007	-	CGA	chr6	87797925	-
intron-5UTR	ENST00000467008	ENST00000369582		TCGA	RV	LUAD	TCGA-95-7039-01A	ATXN1	chr6	16658007	-	CGA	chr6	87797925	-
5CDS-intron	ENST00000568104	ENST00000568478		TCGA	RV	LUAD	TCGA-91-8496-01A	BBS2	chr16	56539862	-	ADAT1	chr16	75637069	-
5CDS-intron	ENST00000568104	ENST00000307921		TCGA	RV	LUAD	TCGA-91-8496-01A	BBS2	chr16	56539862	-	ADAT1	chr16	75637069	-
5CDS-intron	ENST00000245157	ENST00000568478		TCGA	RV	LUAD	TCGA-91-8496-01A	BBS2	chr16	56539862	-	ADAT1	chr16	75637069	-
5CDS-intron	ENST00000245157	ENST00000307921		TCGA	RV	LUAD	TCGA-91-8496-01A	BBS2	chr16	56539862	-	ADAT1	chr16	75637069	-
5UTR-intron	ENST00000561951	ENST00000568478		TCGA	RV	LUAD	TCGA-91-8496-01A	BBS2	chr16	56539862	-	ADAT1	chr16	75637069	-
5UTR-intron	ENST00000561951	ENST00000307921		TCGA	RV	LUAD	TCGA-91-8496-01A	BBS2	chr16	56539862	-	ADAT1	chr16	75637069	-
In-frame	ENST00000589222	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000589222	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000589222	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000589222	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000407086	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000407086	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000407086	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000407086	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000390652	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000390652	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000390652	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000390652	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000408905	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000408905	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000408905	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000408905	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000588462	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000588462	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000588462	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000588462	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585744	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585744	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585744	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585744	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000588874	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000588874	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000588874	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000588874	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585812	ENST00000225394		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585812	ENST00000394869		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585812	ENST00000581348		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
intron-3CDS	ENST00000585812	ENST00000579937		TCGA	RV	LUAD	TCGA-91-6847-01A	BCAS3	chr17	58946044	+	GIT1	chr17	27905797	-
In-frame	ENST00000368759	ENST00000356792		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000368759	ENST00000337623		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000278100	ENST00000356792		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000278100	ENST00000337623		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000429863	ENST00000356792		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000429863	ENST00000337623		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000299130	ENST00000356792		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
In-frame	ENST00000299130	ENST00000337623		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
intron-3CDS	ENST00000478798	ENST00000356792		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
intron-3CDS	ENST00000478798	ENST00000337623		TCGA	RV	LUAD	TCGA-97-8176-01A	BCCIP	chr10	127512291	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000335221	ENST00000589222		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335221	ENST00000407086		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335221	ENST00000390652		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335221	ENST00000408905		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335221	ENST00000588462		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335221	ENST00000585744		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335221	ENST00000588874		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000335221	ENST00000585812		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000589222		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000407086		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000390652		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000408905		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000588462		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000585744		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000321892	ENST00000588874		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000321892	ENST00000585812		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000589222		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000407086		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000390652		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000408905		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000588462		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000585744		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000306378	ENST00000588874		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000306378	ENST00000585812		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000589222		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000407086		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000390652		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000408905		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000588462		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000585744		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000424123	ENST00000588874		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000424123	ENST00000585812		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000589222		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000407086		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000390652		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000408905		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000588462		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000585744		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3CDS	ENST00000577770	ENST00000588874		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
3UTR-3UTR	ENST00000577770	ENST00000585812		TCGA	RV	LUAD	TCGA-67-6217-01A	BPTF	chr17	65936772	+	BCAS3	chr17	59445688	+
In-frame	ENST00000333229	ENST00000322213		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
5CDS-intron	ENST00000333229	ENST00000469129		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
5CDS-intron	ENST00000333229	ENST00000375340		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-3CDS	ENST00000342449	ENST00000322213		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-intron	ENST00000342449	ENST00000469129		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-intron	ENST00000342449	ENST00000375340		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
In-frame	ENST00000380800	ENST00000322213		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
5CDS-intron	ENST00000380800	ENST00000469129		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
5CDS-intron	ENST00000380800	ENST00000375340		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-3CDS	ENST00000341322	ENST00000322213		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-intron	ENST00000341322	ENST00000469129		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-intron	ENST00000341322	ENST00000375340		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-3CDS	ENST00000470108	ENST00000322213		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-intron	ENST00000470108	ENST00000469129		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
intron-intron	ENST00000470108	ENST00000375340		TCGA	RV	LUAD	TCGA-55-6987-01A	BRWD1	chr21	40568424	-	SMC1A	chrX	53442118	-
5CDS-intron	ENST00000346916	ENST00000404460		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000303908		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000409158		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000403716		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000234115		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000439822		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000487980		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000438882		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000538982		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000409612		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000346916	ENST00000409279		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000404460		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000303908		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000409158		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000403716		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000234115		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000439822		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000487980		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000438882		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000538982		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000409612		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000545507	ENST00000409279		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000404460		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000303908		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000409158		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000403716		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000234115		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000439822		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000487980		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000438882		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000538982		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000409612		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000333511	ENST00000409279		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000404460		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000303908		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000409158		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000403716		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000234115		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000439822		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000487980		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000438882		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000538982		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000409612		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000353555	ENST00000409279		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000404460		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000303908		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000409158		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000403716		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000234115		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000439822		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000487980		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000438882		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000538982		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000409612		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000574970	ENST00000409279		TCGA	RV	LUAD	TCGA-50-6673-01A	BSG	chr19	583492	+	PLEKHB2	chr2	131876464	+
Frame-shit	ENST00000346672	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000346672	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000346672	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000346672	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000346672	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000346672	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000360962	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000360962	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000360962	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000360962	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000360962	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000360962	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000527634	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000527634	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000527634	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000527634	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000527634	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000527634	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000540737	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000540737	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000540737	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000540737	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000540737	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000540737	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000532565	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000532565	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000532565	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000532565	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000532565	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000532565	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000525449	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000525449	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000525449	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000525449	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-intron	ENST00000525449	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
5CDS-3UTR	ENST00000525449	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000527368	ENST00000310137		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000527368	ENST00000393979		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
intron-3CDS	ENST00000527368	ENST00000409372		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000527368	ENST00000443702		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
intron-intron	ENST00000527368	ENST00000409738		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
intron-3UTR	ENST00000527368	ENST00000461478		TCGA	RV	LUAD	TCGA-73-7499-01A	C11orf80	chr11	66595835	+	RBM14	chr11	66391685	+
Frame-shit	ENST00000366789	ENST00000432306		TCGA	RV	LUAD	TCGA-55-6969-01A	C1orf95	chr1	226736807	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000366789	ENST00000393077		TCGA	RV	LUAD	TCGA-55-6969-01A	C1orf95	chr1	226736807	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000366789	ENST00000483122		TCGA	RV	LUAD	TCGA-55-6969-01A	C1orf95	chr1	226736807	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000366788	ENST00000432306		TCGA	RV	LUAD	TCGA-55-6969-01A	C1orf95	chr1	226736807	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000366788	ENST00000393077		TCGA	RV	LUAD	TCGA-55-6969-01A	C1orf95	chr1	226736807	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000366788	ENST00000483122		TCGA	RV	LUAD	TCGA-55-6969-01A	C1orf95	chr1	226736807	+	VTI1A	chr10	114286846	+
3UTR-3CDS	ENST00000374640	ENST00000324856		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-3CDS	ENST00000374640	ENST00000457599		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-3CDS	ENST00000374640	ENST00000374152		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-5UTR	ENST00000374640	ENST00000540690		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-3CDS	ENST00000374639	ENST00000324856		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-3CDS	ENST00000374639	ENST00000457599		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-3CDS	ENST00000374639	ENST00000374152		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
3UTR-5UTR	ENST00000374639	ENST00000540690		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
Frame-shit	ENST00000374637	ENST00000324856		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
Frame-shit	ENST00000374637	ENST00000457599		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
Frame-shit	ENST00000374637	ENST00000374152		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
5CDS-5UTR	ENST00000374637	ENST00000540690		TCGA	RV	LUAD	TCGA-86-8358-01A	C1QC	chr1	22974380	+	ARID1A	chr1	27099837	+
Frame-shit	ENST00000252032	ENST00000370331		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
Frame-shit	ENST00000252032	ENST00000540033		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
Frame-shit	ENST00000252032	ENST00000543509		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
5CDS-intron	ENST00000252032	ENST00000491940		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000453730	ENST00000370331		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000453730	ENST00000540033		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000453730	ENST00000543509		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-intron	ENST00000453730	ENST00000491940		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000498079	ENST00000370331		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000498079	ENST00000540033		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000498079	ENST00000543509		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-intron	ENST00000498079	ENST00000491940		TCGA	RV	LUAD	TCGA-73-4662-01A	C20orf194	chr20	3362026	-	EVI5	chr1	93170301	-
intron-3CDS	ENST00000354189	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000354189	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000354189	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000354189	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000354189	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000354189	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000354189	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000354189	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000354189	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000354189	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000354189	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000354189	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000395987	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000395987	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000395987	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000395987	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000395987	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000395987	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000395987	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000395987	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000395987	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000395987	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-intron	ENST00000395987	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-intron	ENST00000395987	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000395990	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000395990	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000395990	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000395990	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000395990	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000395990	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000395990	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000395990	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000395990	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000395990	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000395990	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000395990	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000320267	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000320267	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000320267	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000320267	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000320267	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000320267	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000320267	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000320267	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000320267	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000320267	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-intron	ENST00000320267	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-intron	ENST00000320267	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000537577	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000537577	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000537577	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000537577	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000537577	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000537577	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000537577	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000537577	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000537577	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000537577	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000537577	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000537577	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000545133	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000545133	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000545133	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000545133	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000545133	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000545133	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000545133	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000545133	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000545133	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-5UTR	ENST00000545133	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-intron	ENST00000545133	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5CDS-intron	ENST00000545133	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000557684	ENST00000309364		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000557684	ENST00000359180		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000557684	ENST00000317589		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000557684	ENST00000355397		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000557684	ENST00000429027		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000557684	ENST00000539256		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000557684	ENST00000299275		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000557684	ENST00000538714		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000557684	ENST00000543806		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000557684	ENST00000424268		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000557684	ENST00000540972		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000557684	ENST00000510738		TCGA	RV	LUAD	TCGA-86-7954-01A	CASC1	chr12	25348010	-	PLEKHA5	chr12	19406874	+
Frame-shit	ENST00000369331	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369331	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369321	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369321	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000345633	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000345633	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369318	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369318	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369315	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
Frame-shit	ENST00000369315	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
intron-3CDS	ENST00000452490	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
intron-3CDS	ENST00000452490	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
intron-3CDS	ENST00000468790	ENST00000356792		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
intron-3CDS	ENST00000468790	ENST00000337623		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	CASP7	chr10	115457362	+	C10orf137	chr10	127426487	+
5CDS-5UTR	ENST00000307471	ENST00000313367		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000307471	ENST00000431825		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000307471	ENST00000352860		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000307471	ENST00000353930		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000307471	ENST00000396431		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000307471	ENST00000409069		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000307471	ENST00000396429		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000307471	ENST00000487020		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000409765	ENST00000313367		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000409765	ENST00000431825		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000409765	ENST00000352860		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000409765	ENST00000353930		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000409765	ENST00000396431		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000409765	ENST00000409069		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000409765	ENST00000396429		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000409765	ENST00000487020		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000410069	ENST00000313367		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000410069	ENST00000431825		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000410069	ENST00000352860		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000410069	ENST00000353930		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000410069	ENST00000396431		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000410069	ENST00000409069		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000410069	ENST00000396429		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000410069	ENST00000487020		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000486109	ENST00000313367		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000486109	ENST00000431825		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000486109	ENST00000352860		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-5UTR	ENST00000486109	ENST00000353930		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000486109	ENST00000396431		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000486109	ENST00000409069		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000486109	ENST00000396429		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
5CDS-intron	ENST00000486109	ENST00000487020		TCGA	RV	LUAD	TCGA-69-7979-01A	CCDC126	chr7	23651172	+	OSBPL3	chr7	24932240	-
In-frame	ENST00000366767	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000366767	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000366769	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000366769	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000366764	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000366764	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000334218	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000334218	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000366766	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000366766	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000535525	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000535525	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000366765	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
5CDS-intron	ENST00000366765	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
intron-3CDS	ENST00000488131	ENST00000223642		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
intron-intron	ENST00000488131	ENST00000466280		TCGA	RV	LUAD	TCGA-05-4427-01A	CDC42BPA	chr1	227504706	-	C5	chr9	123780130	-
In-frame	ENST00000429927	ENST00000395719		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
In-frame	ENST00000429927	ENST00000359707		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
In-frame	ENST00000429927	ENST00000357854		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
5CDS-intron	ENST00000429927	ENST00000502654		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
In-frame	ENST00000307465	ENST00000395719		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
In-frame	ENST00000307465	ENST00000359707		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
In-frame	ENST00000307465	ENST00000357854		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
5CDS-intron	ENST00000307465	ENST00000502654		TCGA	RV	LUAD	TCGA-38-4632-01A	CDKL2	chr4	76551005	-	G3BP2	chr4	76573925	-
Frame-shit	ENST00000263921	ENST00000226578		TCGA	RV	LUAD	TCGA-50-6592-01A	CHIC2	chr4	54915122	-	MANBA	chr4	103611928	-
Frame-shit	ENST00000263921	ENST00000505239		TCGA	RV	LUAD	TCGA-50-6592-01A	CHIC2	chr4	54915122	-	MANBA	chr4	103611928	-
Frame-shit	ENST00000512964	ENST00000226578		TCGA	RV	LUAD	TCGA-50-6592-01A	CHIC2	chr4	54915122	-	MANBA	chr4	103611928	-
Frame-shit	ENST00000512964	ENST00000505239		TCGA	RV	LUAD	TCGA-50-6592-01A	CHIC2	chr4	54915122	-	MANBA	chr4	103611928	-
5CDS-5UTR	ENST00000572681	ENST00000600362		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000572681	ENST00000319720		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000572681	ENST00000594768		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000572681	ENST00000453757		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000572681	ENST00000391804		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000572681	ENST00000594458		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
intron-5UTR	ENST00000575839	ENST00000600362		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
intron-5UTR	ENST00000575839	ENST00000319720		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
intron-5UTR	ENST00000575839	ENST00000594768		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
intron-5UTR	ENST00000575839	ENST00000453757		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
intron-5UTR	ENST00000575839	ENST00000391804		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
intron-5UTR	ENST00000575839	ENST00000594458		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000160740	ENST00000600362		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000160740	ENST00000319720		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000160740	ENST00000594768		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000160740	ENST00000453757		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000160740	ENST00000391804		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000160740	ENST00000594458		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000575354	ENST00000600362		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000575354	ENST00000319720		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000575354	ENST00000594768		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000575354	ENST00000453757		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000575354	ENST00000391804		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
5CDS-5UTR	ENST00000575354	ENST00000594458		TCGA	RV	LUAD	TCGA-93-A4JN-01A	CIC	chr19	42793558	+	KLK11	chr19	51528922	-
In-frame	ENST00000249806	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000249806	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000249806	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000565471	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000565471	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000565471	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
5UTR-3CDS	ENST00000418702	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
5UTR-3CDS	ENST00000418702	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
5UTR-3CDS	ENST00000418702	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000566347	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000566347	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000566347	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
intron-3CDS	ENST00000538696	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
intron-3CDS	ENST00000538696	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
intron-3CDS	ENST00000538696	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000564752	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000564752	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000564752	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
5UTR-3CDS	ENST00000569336	ENST00000359660		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
5UTR-3CDS	ENST00000569336	ENST00000542267		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
5UTR-3CDS	ENST00000569336	ENST00000496714		TCGA	RV	LUAD	TCGA-05-4402-01A	CLN6	chr15	68521840	-	FBXL17	chr5	107684231	-
In-frame	ENST00000309964	ENST00000257821		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
In-frame	ENST00000309964	ENST00000323180		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
In-frame	ENST00000309964	ENST00000418153		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
5CDS-intron	ENST00000309964	ENST00000527753		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000381322	ENST00000257821		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000381322	ENST00000323180		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000381322	ENST00000418153		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
5CDS-intron	ENST00000381322	ENST00000527753		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000513440	ENST00000257821		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000513440	ENST00000323180		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000513440	ENST00000418153		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
5CDS-intron	ENST00000513440	ENST00000527753		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
intron-3CDS	ENST00000506923	ENST00000257821		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
intron-3CDS	ENST00000506923	ENST00000323180		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
intron-3CDS	ENST00000506923	ENST00000418153		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
intron-intron	ENST00000506923	ENST00000527753		TCGA	RV	LUAD	TCGA-38-4631-01A	CLOCK	chr4	56319221	-	PHF21A	chr11	46001517	-
Frame-shit	ENST00000377298	ENST00000377748		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377298	ENST00000377732		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377298	ENST00000400915		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377298	ENST00000377740		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000377737		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000537245		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000544978		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000400913		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000340850		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000377725		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000377728		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377298	ENST00000535355		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000361311	ENST00000377748		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000361311	ENST00000377732		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000361311	ENST00000400915		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000361311	ENST00000377740		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000377737		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000537245		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000544978		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000400913		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000340850		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000377725		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000377728		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000361311	ENST00000535355		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377288	ENST00000377748		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377288	ENST00000377732		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377288	ENST00000400915		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000377288	ENST00000377740		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000377737		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000537245		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000544978		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000400913		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000340850		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000377725		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000377728		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
5CDS-5UTR	ENST00000377288	ENST00000535355		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-3CDS	ENST00000477264	ENST00000377748		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-3CDS	ENST00000477264	ENST00000377732		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-3CDS	ENST00000477264	ENST00000400915		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-3CDS	ENST00000477264	ENST00000377740		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000377737		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000537245		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000544978		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000400913		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000340850		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000377725		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000377728		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
intron-5UTR	ENST00000477264	ENST00000535355		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	CLSTN1	chr1	9833330	-	PLEKHG5	chr1	6537718	-
Frame-shit	ENST00000347053	ENST00000440859		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
Frame-shit	ENST00000347053	ENST00000222597		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
In-frame	ENST00000347053	ENST00000415884		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
Frame-shit	ENST00000297135	ENST00000440859		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
Frame-shit	ENST00000297135	ENST00000222597		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
In-frame	ENST00000297135	ENST00000415884		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
Frame-shit	ENST00000393603	ENST00000440859		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
Frame-shit	ENST00000393603	ENST00000222597		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
In-frame	ENST00000393603	ENST00000415884		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
5UTR-3CDS	ENST00000475638	ENST00000440859		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
5UTR-3CDS	ENST00000475638	ENST00000222597		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
5UTR-3CDS	ENST00000475638	ENST00000415884		TCGA	RV	LUAD	TCGA-38-4631-01A	COG5	chr7	107052947	-	CBLL1	chr7	107398588	+
Frame-shit	ENST00000394026	ENST00000326303		TCGA	RV	LUAD	TCGA-05-4382-01A	COQ6	chr14	74428606	+	ACOT4	chr14	74061753	+
Frame-shit	ENST00000238709	ENST00000326303		TCGA	RV	LUAD	TCGA-05-4382-01A	COQ6	chr14	74428606	+	ACOT4	chr14	74061753	+
Frame-shit	ENST00000334571	ENST00000326303		TCGA	RV	LUAD	TCGA-05-4382-01A	COQ6	chr14	74428606	+	ACOT4	chr14	74061753	+
intron-3CDS	ENST00000554920	ENST00000326303		TCGA	RV	LUAD	TCGA-05-4382-01A	COQ6	chr14	74428606	+	ACOT4	chr14	74061753	+
intron-3CDS	ENST00000555552	ENST00000326303		TCGA	RV	LUAD	TCGA-05-4382-01A	COQ6	chr14	74428606	+	ACOT4	chr14	74061753	+
Frame-shit	ENST00000412460	ENST00000356554		TCGA	RV	LUAD	TCGA-78-7167-01A	CSPP1	chr8	68071372	+	MAN1A2	chr1	117944808	+
5CDS-intron	ENST00000412460	ENST00000482811		TCGA	RV	LUAD	TCGA-78-7167-01A	CSPP1	chr8	68071372	+	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000262210	ENST00000356554		TCGA	RV	LUAD	TCGA-78-7167-01A	CSPP1	chr8	68071372	+	MAN1A2	chr1	117944808	+
5CDS-intron	ENST00000262210	ENST00000482811		TCGA	RV	LUAD	TCGA-78-7167-01A	CSPP1	chr8	68071372	+	MAN1A2	chr1	117944808	+
3UTR-3CDS	ENST00000521168	ENST00000356554		TCGA	RV	LUAD	TCGA-78-7167-01A	CSPP1	chr8	68071372	+	MAN1A2	chr1	117944808	+
3UTR-intron	ENST00000521168	ENST00000482811		TCGA	RV	LUAD	TCGA-78-7167-01A	CSPP1	chr8	68071372	+	MAN1A2	chr1	117944808	+
Frame-shit	ENST00000524630	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000524630	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000524630	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529919	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529919	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000529919	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000399039	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000399039	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000399039	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000360682	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000360682	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000360682	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000361796	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000361796	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000361796	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000361391	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000361391	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000361391	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000530094	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000530094	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000530094	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000428599	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000428599	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000428599	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000361332	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000361332	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000361332	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000527467	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000527467	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000527467	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000415361	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000415361	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000415361	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532245	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532245	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000532245	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532463	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532463	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000532463	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000528232	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000528232	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000528232	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529986	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529986	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000529986	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000531014	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000531014	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000531014	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000358694	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000358694	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000358694	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000526772	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000526772	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000526772	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532787	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532787	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000532787	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000533667	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000533667	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000533667	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529873	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529873	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000529873	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000525902	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000525902	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000525902	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529526	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000529526	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000529526	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532649	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532649	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000532649	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000426142	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000426142	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000426142	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532844	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000532844	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000532844	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000528621	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000528621	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000528621	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000399050	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000399050	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000399050	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000526357	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000526357	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000526357	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000530748	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000530748	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000530748	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000534579	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000534579	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000534579	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000526938	ENST00000527985		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
Frame-shit	ENST00000526938	ENST00000287169		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
5CDS-intron	ENST00000526938	ENST00000527090		TCGA	RV	LUAD	TCGA-55-8506-01A	CTNND1	chr11	57576938	+	ZDHHC5	chr11	57463392	+
In-frame	ENST00000400967	ENST00000367006		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000400967	ENST00000452621		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000400967	ENST00000419091		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
5CDS-intron	ENST00000400967	ENST00000367005		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
5CDS-intron	ENST00000400967	ENST00000526255		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000235453	ENST00000367006		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000235453	ENST00000452621		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000235453	ENST00000419091		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
5CDS-intron	ENST00000235453	ENST00000367005		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
5CDS-intron	ENST00000235453	ENST00000526255		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
In-frame	ENST00000367396	ENST00000367006		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000367396	ENST00000452621		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000367396	ENST00000419091		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
5CDS-intron	ENST00000367396	ENST00000367005		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
5CDS-intron	ENST00000367396	ENST00000526255		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
intron-3CDS	ENST00000477581	ENST00000367006		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
intron-3CDS	ENST00000477581	ENST00000452621		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
intron-3CDS	ENST00000477581	ENST00000419091		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
intron-intron	ENST00000477581	ENST00000367005		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
intron-intron	ENST00000477581	ENST00000526255		TCGA	RV	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211432921	+
Frame-shit	ENST00000251241	ENST00000287272		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
Frame-shit	ENST00000251241	ENST00000453357		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
Frame-shit	ENST00000251241	ENST00000404895		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
5CDS-intron	ENST00000251241	ENST00000420357		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
5CDS-intron	ENST00000251241	ENST00000416672		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
5CDS-intron	ENST00000251241	ENST00000449677		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-3CDS	ENST00000451169	ENST00000287272		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-3CDS	ENST00000451169	ENST00000453357		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-3CDS	ENST00000451169	ENST00000404895		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-intron	ENST00000451169	ENST00000420357		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-intron	ENST00000451169	ENST00000416672		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-intron	ENST00000451169	ENST00000449677		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-3CDS	ENST00000425628	ENST00000287272		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-3CDS	ENST00000425628	ENST00000453357		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-3CDS	ENST00000425628	ENST00000404895		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-intron	ENST00000425628	ENST00000420357		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-intron	ENST00000425628	ENST00000416672		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
intron-intron	ENST00000425628	ENST00000449677		TCGA	RV	LUAD	TCGA-78-7147-01A	DHX40	chr17	57685712	+	UNC5D	chr8	35563447	+
In-frame	ENST00000366991	ENST00000371839		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
In-frame	ENST00000366991	ENST00000371838		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
In-frame	ENST00000366991	ENST00000371836		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
5CDS-intron	ENST00000366991	ENST00000334103		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
5CDS-intron	ENST00000366991	ENST00000497451		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
In-frame	ENST00000542077	ENST00000371839		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
In-frame	ENST00000542077	ENST00000371838		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
In-frame	ENST00000542077	ENST00000371836		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
5CDS-intron	ENST00000542077	ENST00000334103		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
5CDS-intron	ENST00000542077	ENST00000497451		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
3UTR-3CDS	ENST00000475419	ENST00000371839		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
3UTR-3CDS	ENST00000475419	ENST00000371838		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
3UTR-3CDS	ENST00000475419	ENST00000371836		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
3UTR-intron	ENST00000475419	ENST00000334103		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
3UTR-intron	ENST00000475419	ENST00000497451		TCGA	RV	LUAD	TCGA-49-4501-01A	DTL	chr1	212220759	+	AGBL4	chr1	50317190	-
5CDS-5UTR	ENST00000412331	ENST00000307790		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-5UTR	ENST00000412331	ENST00000397771		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-5UTR	ENST00000412331	ENST00000542393		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-intron	ENST00000412331	ENST00000478812		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-5UTR	ENST00000381683	ENST00000307790		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-5UTR	ENST00000381683	ENST00000397771		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-5UTR	ENST00000381683	ENST00000542393		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
5CDS-intron	ENST00000381683	ENST00000478812		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-5UTR	ENST00000406934	ENST00000307790		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-5UTR	ENST00000406934	ENST00000397771		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-5UTR	ENST00000406934	ENST00000542393		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-intron	ENST00000406934	ENST00000478812		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-5UTR	ENST00000476955	ENST00000307790		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-5UTR	ENST00000476955	ENST00000397771		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-5UTR	ENST00000476955	ENST00000542393		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
intron-intron	ENST00000476955	ENST00000478812		TCGA	RV	LUAD	TCGA-44-A4SU-01A	EIF3L	chr22	38251651	+	ASCC2	chr22	30228331	-
In-frame	ENST00000318522	ENST00000389048		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000431873		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000498037		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
In-frame	ENST00000402711	ENST00000389048		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000431873		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000498037		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000482660	ENST00000389048		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000431873		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000498037		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
In-frame	ENST00000453191	ENST00000389048		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000453191	ENST00000431873		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000453191	ENST00000498037		TCGA	RV	LUAD	TCGA-86-A4P8-01A	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-5UTR	ENST00000540011	ENST00000397799		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000540011	ENST00000303143		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000540011	ENST00000481785		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-5UTR	ENST00000330210	ENST00000397799		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000330210	ENST00000303143		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000330210	ENST00000481785		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-5UTR	ENST00000427468	ENST00000397799		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000427468	ENST00000303143		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000427468	ENST00000481785		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5UTR-5UTR	ENST00000446149	ENST00000397799		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5UTR-intron	ENST00000446149	ENST00000303143		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5UTR-intron	ENST00000446149	ENST00000481785		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-5UTR	ENST00000373048	ENST00000397799		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000373048	ENST00000303143		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5CDS-intron	ENST00000373048	ENST00000481785		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
intron-5UTR	ENST00000319637	ENST00000397799		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
intron-intron	ENST00000319637	ENST00000303143		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
intron-intron	ENST00000319637	ENST00000481785		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	EPHA10	chr1	38192774	-	COL8A2	chr1	36581353	-
5UTR-3CDS	ENST00000543523	ENST00000261195		TCGA	RV	LUAD	TCGA-97-7554-01A	EPS8	chr12	15942095	-	GYS2	chr12	21733457	-
5UTR-3CDS	ENST00000281172	ENST00000261195		TCGA	RV	LUAD	TCGA-97-7554-01A	EPS8	chr12	15942095	-	GYS2	chr12	21733457	-
intron-3CDS	ENST00000543612	ENST00000261195		TCGA	RV	LUAD	TCGA-97-7554-01A	EPS8	chr12	15942095	-	GYS2	chr12	21733457	-
intron-3CDS	ENST00000540613	ENST00000261195		TCGA	RV	LUAD	TCGA-97-7554-01A	EPS8	chr12	15942095	-	GYS2	chr12	21733457	-
intron-3CDS	ENST00000542903	ENST00000261195		TCGA	RV	LUAD	TCGA-97-7554-01A	EPS8	chr12	15942095	-	GYS2	chr12	21733457	-
In-frame	ENST00000373095	ENST00000338961		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
5CDS-5UTR	ENST00000373095	ENST00000277462		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
5CDS-5UTR	ENST00000373095	ENST00000483625		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
intron-3CDS	ENST00000373084	ENST00000338961		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000373084	ENST00000277462		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000373084	ENST00000483625		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
intron-3CDS	ENST00000300434	ENST00000338961		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000300434	ENST00000277462		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
intron-5UTR	ENST00000300434	ENST00000483625		TCGA	RV	LUAD	TCGA-69-A59K-01A	FAM102A	chr9	130715854	-	PTGES2	chr9	130887720	-
Frame-shit	ENST00000389301	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000389301	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000389301	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000389301	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000389301	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000389301	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-5UTR	ENST00000389301	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-intron	ENST00000389301	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-intron	ENST00000389301	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000568369	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000568369	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000568369	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000568369	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000568369	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
Frame-shit	ENST00000568369	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-5UTR	ENST00000568369	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-intron	ENST00000568369	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-intron	ENST00000568369	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000567284	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000567284	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000567284	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000567284	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000567284	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000567284	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-5UTR	ENST00000567284	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000567284	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000567284	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000389302	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000389302	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000389302	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000389302	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000389302	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000389302	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-5UTR	ENST00000389302	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000389302	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000389302	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000563673	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000563673	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000563673	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000563673	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000563673	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000563673	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-5UTR	ENST00000563673	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000563673	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000563673	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000534992	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000534992	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000534992	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000534992	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000534992	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000534992	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-5UTR	ENST00000534992	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000534992	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000534992	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000543736	ENST00000382722		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000543736	ENST00000587995		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000543736	ENST00000588077		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000543736	ENST00000586184		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000543736	ENST00000585708		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-3CDS	ENST00000543736	ENST00000585732		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-5UTR	ENST00000543736	ENST00000539048		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000543736	ENST00000538450		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
intron-intron	ENST00000543736	ENST00000538027		TCGA	RV	LUAD	TCGA-78-7161-01A	FANCA	chr16	89818546	-	CACNA2D4	chr12	1955855	-
5CDS-3UTR	ENST00000306749	ENST00000339368		TCGA	RV	LUAD	TCGA-86-8359-01A	FASN	chr17	80053196	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000306749	ENST00000509152		TCGA	RV	LUAD	TCGA-86-8359-01A	FASN	chr17	80053196	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000306749	ENST00000526473		TCGA	RV	LUAD	TCGA-86-8359-01A	FASN	chr17	80053196	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000579758	ENST00000339368		TCGA	RV	LUAD	TCGA-86-8359-01A	FASN	chr17	80053196	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000579758	ENST00000509152		TCGA	RV	LUAD	TCGA-86-8359-01A	FASN	chr17	80053196	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000579758	ENST00000526473		TCGA	RV	LUAD	TCGA-86-8359-01A	FASN	chr17	80053196	-	ZNF595	chr4	59323	+
Frame-shit	ENST00000379245	ENST00000264710		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
5CDS-3UTR	ENST00000379245	ENST00000462003		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
Frame-shit	ENST00000305852	ENST00000264710		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
5CDS-3UTR	ENST00000305852	ENST00000462003		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
Frame-shit	ENST00000405912	ENST00000264710		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
5CDS-3UTR	ENST00000405912	ENST00000462003		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
intron-3CDS	ENST00000487919	ENST00000264710		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
intron-3UTR	ENST00000487919	ENST00000462003		TCGA	RV	LUAD	TCGA-67-3770-01A	FEZ2	chr2	36805740	-	RAB10	chr2	26321531	+
In-frame	ENST00000507166	ENST00000263054		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000507166	ENST00000369698		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000507166	ENST00000344440		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000507166	ENST00000478809		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
In-frame	ENST00000358575	ENST00000263054		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000358575	ENST00000369698		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000358575	ENST00000344440		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000358575	ENST00000478809		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
In-frame	ENST00000337488	ENST00000263054		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000337488	ENST00000369698		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000337488	ENST00000344440		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000337488	ENST00000478809		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
In-frame	ENST00000507922	ENST00000263054		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000507922	ENST00000369698		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000507922	ENST00000344440		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000507922	ENST00000478809		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
In-frame	ENST00000306932	ENST00000263054		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000306932	ENST00000369698		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000306932	ENST00000344440		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000306932	ENST00000478809		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
intron-3CDS	ENST00000510668	ENST00000263054		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
intron-intron	ENST00000510668	ENST00000369698		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
intron-intron	ENST00000510668	ENST00000344440		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
intron-intron	ENST00000510668	ENST00000478809		TCGA	RV	LUAD	TCGA-55-8615-01A	FIP1L1	chr4	54266006	+	SORCS1	chr10	108489872	-
5UTR-3CDS	ENST00000299293	ENST00000336325		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000299293	ENST00000360596		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000299293	ENST00000253382		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3UTR	ENST00000299293	ENST00000476922		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000549921	ENST00000336325		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000549921	ENST00000360596		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000549921	ENST00000253382		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3UTR	ENST00000549921	ENST00000476922		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000550389	ENST00000336325		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000550389	ENST00000360596		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000550389	ENST00000253382		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3UTR	ENST00000550389	ENST00000476922		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
intron-3CDS	ENST00000397997	ENST00000336325		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
intron-3CDS	ENST00000397997	ENST00000360596		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
intron-3CDS	ENST00000397997	ENST00000253382		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
intron-3UTR	ENST00000397997	ENST00000476922		TCGA	RV	LUAD	TCGA-78-7143-01A	FRS2	chr12	69864310	+	ACSS2	chr20	33511126	+
5UTR-3CDS	ENST00000299293	ENST00000261267		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000299293	ENST00000549690		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000299293	ENST00000548839		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000549921	ENST00000261267		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000549921	ENST00000549690		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000549921	ENST00000548839		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000550389	ENST00000261267		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000550389	ENST00000549690		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000550389	ENST00000548839		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000397997	ENST00000261267		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000397997	ENST00000549690		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000397997	ENST00000548839		TCGA	RV	LUAD	TCGA-69-7760-01A	FRS2	chr12	69864310	+	LYZ	chr12	69743888	+
In-frame	ENST00000590918	ENST00000418929		TCGA	RV	LUAD	TCGA-67-4679-01B	GIPR	chr19	46181484	+	PRR12	chr19	50117790	+
In-frame	ENST00000263281	ENST00000418929		TCGA	RV	LUAD	TCGA-67-4679-01B	GIPR	chr19	46181484	+	PRR12	chr19	50117790	+
In-frame	ENST00000304207	ENST00000418929		TCGA	RV	LUAD	TCGA-67-4679-01B	GIPR	chr19	46181484	+	PRR12	chr19	50117790	+
intron-3CDS	ENST00000593127	ENST00000418929		TCGA	RV	LUAD	TCGA-67-4679-01B	GIPR	chr19	46181484	+	PRR12	chr19	50117790	+
In-frame	ENST00000470487	ENST00000475381		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
In-frame	ENST00000470487	ENST00000273512		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
In-frame	ENST00000470487	ENST00000538775		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000470487	ENST00000543711		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
In-frame	ENST00000309027	ENST00000475381		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
In-frame	ENST00000309027	ENST00000273512		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
In-frame	ENST00000309027	ENST00000538775		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000309027	ENST00000543711		TCGA	RV	LUAD	TCGA-38-4630-01A	GOLIM4	chr3	167812887	-	NCEH1	chr3	172365904	-
5CDS-5UTR	ENST00000329321	ENST00000330997		TCGA	RV	LUAD	TCGA-55-8205-01A	GPR39	chr2	133175471	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000329321	ENST00000544719		TCGA	RV	LUAD	TCGA-55-8205-01A	GPR39	chr2	133175471	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000329321	ENST00000591679		TCGA	RV	LUAD	TCGA-55-8205-01A	GPR39	chr2	133175471	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000470071	ENST00000330997		TCGA	RV	LUAD	TCGA-55-8205-01A	GPR39	chr2	133175471	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000470071	ENST00000544719		TCGA	RV	LUAD	TCGA-55-8205-01A	GPR39	chr2	133175471	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000470071	ENST00000591679		TCGA	RV	LUAD	TCGA-55-8205-01A	GPR39	chr2	133175471	+	ZNF285	chr19	44901421	-
Frame-shit	ENST00000340124	ENST00000199936		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	GPT2	chr16	46956328	+	HSD17B2	chr16	82104547	+
Frame-shit	ENST00000440783	ENST00000199936		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	GPT2	chr16	46956328	+	HSD17B2	chr16	82104547	+
In-frame	ENST00000503787	ENST00000331018		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
In-frame	ENST00000503787	ENST00000266254		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
5CDS-intron	ENST00000503787	ENST00000445824		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
3UTR-3CDS	ENST00000506123	ENST00000331018		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
3UTR-3CDS	ENST00000506123	ENST00000266254		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
3UTR-intron	ENST00000506123	ENST00000445824		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
In-frame	ENST00000296734	ENST00000331018		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
In-frame	ENST00000296734	ENST00000266254		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
5CDS-intron	ENST00000296734	ENST00000445824		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
In-frame	ENST00000515370	ENST00000331018		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
In-frame	ENST00000515370	ENST00000266254		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
5CDS-intron	ENST00000515370	ENST00000445824		TCGA	RV	LUAD	TCGA-93-8067-01A	GPX8	chr5	54456071	+	TTLL1	chr22	43455533	-
Frame-shit	ENST00000379388	ENST00000215832		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000379388	ENST00000398822		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
Frame-shit	ENST00000379388	ENST00000544786		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
5CDS-5UTR	ENST00000379388	ENST00000491588		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000484210	ENST00000215832		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000484210	ENST00000398822		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000484210	ENST00000544786		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-5UTR	ENST00000484210	ENST00000491588		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000541134	ENST00000215832		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000541134	ENST00000398822		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000541134	ENST00000544786		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-5UTR	ENST00000541134	ENST00000491588		TCGA	RV	LUAD	TCGA-55-6978-01A	HIVEP1	chr6	12136125	+	MAPK1	chr22	22123609	-
intron-3CDS	ENST00000486901	ENST00000370073		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370071		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370074		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370070		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370061		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370072		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000542803		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370068		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370067		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370065		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000486901	ENST00000370066		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3UTR	ENST00000486901	ENST00000477948		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370073		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370071		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370074		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370070		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370061		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370072		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000542803		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370068		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370067		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370065		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
Frame-shit	ENST00000374695	ENST00000370066		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
5CDS-3UTR	ENST00000374695	ENST00000477948		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370073		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370071		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370074		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370070		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370061		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370072		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000542803		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370068		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370067		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370065		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3CDS	ENST00000430507	ENST00000370066		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
intron-3UTR	ENST00000430507	ENST00000477948		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPG2	chr1	22222415	-	NTNG1	chr1	107866904	+
5UTR-5UTR	ENST00000429149	ENST00000342907		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
5UTR-5UTR	ENST00000429149	ENST00000393640		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
5UTR-5UTR	ENST00000429149	ENST00000566097		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000569641	ENST00000342907		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000569641	ENST00000393640		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000569641	ENST00000566097		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000288098	ENST00000342907		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000288098	ENST00000393640		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000288098	ENST00000566097		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000566361	ENST00000342907		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000566361	ENST00000393640		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
intron-5UTR	ENST00000566361	ENST00000566097		TCGA	RV	LUAD	TCGA-05-4402-01A	IL34	chr16	70613952	+	ST3GAL2	chr16	70433436	-
Frame-shit	ENST00000368594	ENST00000298622		TCGA	RV	LUAD	TCGA-78-8640-01A	INPP5A	chr10	134503959	+	JAKMIP3	chr10	133950523	+
5CDS-intron	ENST00000368594	ENST00000477275		TCGA	RV	LUAD	TCGA-78-8640-01A	INPP5A	chr10	134503959	+	JAKMIP3	chr10	133950523	+
Frame-shit	ENST00000368593	ENST00000298622		TCGA	RV	LUAD	TCGA-78-8640-01A	INPP5A	chr10	134503959	+	JAKMIP3	chr10	133950523	+
5CDS-intron	ENST00000368593	ENST00000477275		TCGA	RV	LUAD	TCGA-78-8640-01A	INPP5A	chr10	134503959	+	JAKMIP3	chr10	133950523	+
3UTR-3CDS	ENST00000487614	ENST00000298622		TCGA	RV	LUAD	TCGA-78-8640-01A	INPP5A	chr10	134503959	+	JAKMIP3	chr10	133950523	+
3UTR-intron	ENST00000487614	ENST00000477275		TCGA	RV	LUAD	TCGA-78-8640-01A	INPP5A	chr10	134503959	+	JAKMIP3	chr10	133950523	+
intron-3CDS	ENST00000539801	ENST00000323959		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000539801	ENST00000524827		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000539801	ENST00000526480		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000539801	ENST00000438862		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000539801	ENST00000431742		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
5UTR-3CDS	ENST00000381652	ENST00000323959		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000381652	ENST00000524827		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000381652	ENST00000526480		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000381652	ENST00000438862		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000381652	ENST00000431742		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-3CDS	ENST00000544510	ENST00000323959		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000544510	ENST00000524827		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000544510	ENST00000526480		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000544510	ENST00000438862		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000544510	ENST00000431742		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-3CDS	ENST00000487310	ENST00000323959		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000487310	ENST00000524827		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000487310	ENST00000526480		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000487310	ENST00000438862		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
intron-intron	ENST00000487310	ENST00000431742		TCGA	RV	LUAD	TCGA-83-5908-01A	JAK2	chr9	4986022	+	CSTF3	chr11	33108687	-
Frame-shit	ENST00000228495	ENST00000335509		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
Frame-shit	ENST00000228495	ENST00000550785		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
Frame-shit	ENST00000228495	ENST00000541517		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
Frame-shit	ENST00000228495	ENST00000392569		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5CDS-intron	ENST00000228495	ENST00000546787		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000540089	ENST00000335509		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000540089	ENST00000550785		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000540089	ENST00000541517		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000540089	ENST00000392569		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-intron	ENST00000540089	ENST00000546787		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5UTR-3CDS	ENST00000424763	ENST00000335509		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5UTR-3CDS	ENST00000424763	ENST00000550785		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5UTR-3CDS	ENST00000424763	ENST00000541517		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5UTR-3CDS	ENST00000424763	ENST00000392569		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5UTR-intron	ENST00000424763	ENST00000546787		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000538161	ENST00000335509		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000538161	ENST00000550785		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000538161	ENST00000541517		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-3CDS	ENST00000538161	ENST00000392569		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
intron-intron	ENST00000538161	ENST00000546787		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
In-frame	ENST00000540411	ENST00000335509		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
In-frame	ENST00000540411	ENST00000550785		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
In-frame	ENST00000540411	ENST00000541517		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
In-frame	ENST00000540411	ENST00000392569		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
5CDS-intron	ENST00000540411	ENST00000546787		TCGA	RV	LUAD	TCGA-91-6848-01A	KCTD10	chr12	109907320	-	TPCN1	chr12	113716577	+
In-frame	ENST00000398645	ENST00000308831		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000398645	ENST00000533360		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000398645	ENST00000532559		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000529006	ENST00000308831		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000529006	ENST00000533360		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000529006	ENST00000532559		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000526258	ENST00000308831		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000526258	ENST00000533360		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000526258	ENST00000532559		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000308783	ENST00000308831		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000308783	ENST00000533360		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000308783	ENST00000532559		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530342	ENST00000308831		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530342	ENST00000533360		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000530342	ENST00000532559		TCGA	RV	LUAD	TCGA-44-4112-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
Frame-shit	ENST00000372396	ENST00000477973		TCGA	RV	LUAD	TCGA-78-7153-01A	KDM4A	chr1	44149475	+	RYBP	chr3	72428578	-
intron-3CDS	ENST00000463151	ENST00000477973		TCGA	RV	LUAD	TCGA-78-7153-01A	KDM4A	chr1	44149475	+	RYBP	chr3	72428578	-
Frame-shit	ENST00000452825	ENST00000400556		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000452825	ENST00000400555		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
5CDS-intron	ENST00000452825	ENST00000580583		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000375401	ENST00000400556		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000375401	ENST00000400555		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
5CDS-intron	ENST00000375401	ENST00000580583		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000404049	ENST00000400556		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000404049	ENST00000400555		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
5CDS-intron	ENST00000404049	ENST00000580583		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000375379	ENST00000400556		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000375379	ENST00000400555		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
5CDS-intron	ENST00000375379	ENST00000580583		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000375383	ENST00000400556		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
Frame-shit	ENST00000375383	ENST00000400555		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
5CDS-intron	ENST00000375383	ENST00000580583		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
intron-3CDS	ENST00000465402	ENST00000400556		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
intron-3CDS	ENST00000465402	ENST00000400555		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
intron-intron	ENST00000465402	ENST00000580583		TCGA	RV	LUAD	TCGA-05-4398-01A	KDM5C	chrX	53240679	-	PPP4R1	chr18	9550396	-
In-frame	ENST00000377967	ENST00000378707		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000377967	ENST00000359836		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000377967	ENST00000541735		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000377967	ENST00000343523		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000377967	ENST00000378677		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000377967	ENST00000357033		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000377967	ENST00000474231		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000377967	ENST00000378723		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000377967	ENST00000378702		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000377967	ENST00000361471		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000377967	ENST00000378680		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000377967	ENST00000288447		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-5UTR	ENST00000377967	ENST00000445312		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000378707		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000359836		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000541735		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000343523		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000378677		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000357033		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000382899	ENST00000474231		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000382899	ENST00000378723		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000382899	ENST00000378702		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000382899	ENST00000361471		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000382899	ENST00000378680		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000382899	ENST00000288447		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-5UTR	ENST00000382899	ENST00000445312		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000378707		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000359836		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000541735		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000343523		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000378677		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000357033		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000536777	ENST00000474231		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000536777	ENST00000378723		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000536777	ENST00000378702		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000536777	ENST00000361471		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000536777	ENST00000378680		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000536777	ENST00000288447		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-5UTR	ENST00000536777	ENST00000445312		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000378707		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000359836		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000541735		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000343523		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000378677		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000357033		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000543216	ENST00000474231		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000543216	ENST00000378723		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000543216	ENST00000378702		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000543216	ENST00000361471		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000543216	ENST00000378680		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-intron	ENST00000543216	ENST00000288447		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
5CDS-5UTR	ENST00000543216	ENST00000445312		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000378707		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000359836		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000541735		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000343523		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000378677		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000357033		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-3CDS	ENST00000479423	ENST00000474231		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-intron	ENST00000479423	ENST00000378723		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-intron	ENST00000479423	ENST00000378702		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-intron	ENST00000479423	ENST00000361471		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-intron	ENST00000479423	ENST00000378680		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-intron	ENST00000479423	ENST00000288447		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
intron-5UTR	ENST00000479423	ENST00000445312		TCGA	RV	LUAD	TCGA-49-AARO-01A	KDM6A	chrX	44833960	+	DMD	chrX	31497220	-
In-frame	ENST00000604948	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000604948	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000604948	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000604948	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
In-frame	ENST00000557565	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000557565	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000557565	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000557565	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
In-frame	ENST00000250377	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000250377	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000250377	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000250377	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
In-frame	ENST00000321130	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000321130	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000321130	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000321130	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
In-frame	ENST00000534898	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000534898	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000534898	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000534898	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
In-frame	ENST00000603544	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000603544	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000603544	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000603544	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
In-frame	ENST00000605870	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000605870	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000605870	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000605870	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000603588	ENST00000280979		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000603588	ENST00000557354		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000603588	ENST00000557272		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000603588	ENST00000554449		TCGA	RV	LUAD	TCGA-86-8669-01A	KIAA0391	chr14	35649983	+	AKAP6	chr14	33290608	+
Frame-shit	ENST00000450689	ENST00000435803		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
5CDS-intron	ENST00000450689	ENST00000544596		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
Frame-shit	ENST00000297222	ENST00000435803		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
5CDS-intron	ENST00000297222	ENST00000544596		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
Frame-shit	ENST00000444627	ENST00000435803		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
5CDS-intron	ENST00000444627	ENST00000544596		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
Frame-shit	ENST00000416314	ENST00000435803		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
5CDS-intron	ENST00000416314	ENST00000544596		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
5UTR-3CDS	ENST00000490995	ENST00000435803		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
5UTR-intron	ENST00000490995	ENST00000544596		TCGA	RV	LUAD	TCGA-44-A479-01A	KIAA1324L	chr7	86547758	-	ABCA13	chr7	48308577	+
In-frame	ENST00000378814	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378814	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378814	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378814	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378814	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378814	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378814	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378814	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378814	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000259711	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000259711	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000259711	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378843	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378843	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378843	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378826	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378826	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378826	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
In-frame	ENST00000378816	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378816	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000378816	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000502704	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000502704	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000502704	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000368226		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000368227		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000532331		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000368213		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000368210		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000368215		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-3CDS	ENST00000503342	ENST00000368207		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000503342	ENST00000524481		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
intron-5UTR	ENST00000503342	ENST00000525459		TCGA	RV	LUAD	TCGA-44-7671-01A	KIF13A	chr6	17825999	-	PTPRK	chr6	128718833	-
5CDS-5UTR	ENST00000313654	ENST00000400473		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-5UTR	ENST00000313654	ENST00000256925		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-3UTR	ENST00000313654	ENST00000585061		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-3UTR	ENST00000313654	ENST00000420687		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-5UTR	ENST00000399516	ENST00000400473		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-5UTR	ENST00000399516	ENST00000256925		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-3UTR	ENST00000399516	ENST00000585061		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5CDS-3UTR	ENST00000399516	ENST00000420687		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000269217	ENST00000400473		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000269217	ENST00000256925		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000269217	ENST00000585061		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000269217	ENST00000420687		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000587184	ENST00000400473		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000587184	ENST00000256925		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000587184	ENST00000585061		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000587184	ENST00000420687		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000588770	ENST00000400473		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000588770	ENST00000256925		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000588770	ENST00000585061		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000588770	ENST00000420687		TCGA	RV	LUAD	TCGA-69-8453-01A	LAMA3	chr18	21269941	+	CABLES1	chr18	20768802	+
5UTR-3CDS	ENST00000540664	ENST00000369230		TCGA	RV	LUAD	TCGA-50-5941-01A	LCOR	chr10	98593236	+	PNLIPRP3	chr10	118202567	+
5UTR-3CDS	ENST00000371103	ENST00000369230		TCGA	RV	LUAD	TCGA-50-5941-01A	LCOR	chr10	98593236	+	PNLIPRP3	chr10	118202567	+
5UTR-3CDS	ENST00000356016	ENST00000369230		TCGA	RV	LUAD	TCGA-50-5941-01A	LCOR	chr10	98593236	+	PNLIPRP3	chr10	118202567	+
5UTR-3CDS	ENST00000371097	ENST00000369230		TCGA	RV	LUAD	TCGA-50-5941-01A	LCOR	chr10	98593236	+	PNLIPRP3	chr10	118202567	+
intron-3CDS	ENST00000498444	ENST00000369230		TCGA	RV	LUAD	TCGA-50-5941-01A	LCOR	chr10	98593236	+	PNLIPRP3	chr10	118202567	+
Frame-shit	ENST00000524419	ENST00000299413		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000524419	ENST00000532066		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000528989	ENST00000299413		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000528989	ENST00000532066		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000315571	ENST00000299413		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000315571	ENST00000532066		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
intron-3CDS	ENST00000529759	ENST00000299413		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000529759	ENST00000532066		TCGA	RV	LUAD	TCGA-50-6592-01A	LDLRAD3	chr11	36120011	+	TRIM44	chr11	35827908	+
In-frame	ENST00000555028	ENST00000357395		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
In-frame	ENST00000555028	ENST00000358025		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
In-frame	ENST00000555028	ENST00000344113		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000341472		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000356081		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000554584		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000555002		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000394768		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000556725		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000553455		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-5UTR	ENST00000555028	ENST00000555022		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000554805		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000458046		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000555028	ENST00000441438		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-3CDS	ENST00000554076	ENST00000357395		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-3CDS	ENST00000554076	ENST00000358025		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-3CDS	ENST00000554076	ENST00000344113		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000341472		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000356081		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000554584		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000555002		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000394768		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000556725		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000553455		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-5UTR	ENST00000554076	ENST00000555022		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000554805		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000458046		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
3UTR-intron	ENST00000554076	ENST00000441438		TCGA	RV	LUAD	TCGA-97-7937-01A	LIN52	chr14	74562688	+	SYNE2	chr14	64675476	+
5CDS-intron	ENST00000360614	ENST00000484427		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000360614	ENST00000371764		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000585374	ENST00000484427		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000585374	ENST00000371764		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000593119	ENST00000484427		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000593119	ENST00000371764		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000540670	ENST00000484427		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000540670	ENST00000371764		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
intron-intron	ENST00000590729	ENST00000484427		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
intron-intron	ENST00000590729	ENST00000371764		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
intron-intron	ENST00000590511	ENST00000484427		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
intron-intron	ENST00000590511	ENST00000371764		TCGA	RV	LUAD	TCGA-95-7944-01A	LONP1	chr19	5691846	-	DDX27	chr20	47849303	+
In-frame	ENST00000285737	ENST00000340170		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
In-frame	ENST00000285737	ENST00000263208		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
5CDS-5UTR	ENST00000285737	ENST00000541063		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
5CDS-5UTR	ENST00000285737	ENST00000546308		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
5CDS-5UTR	ENST00000285737	ENST00000464189		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
In-frame	ENST00000535754	ENST00000340170		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
In-frame	ENST00000535754	ENST00000263208		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
5CDS-5UTR	ENST00000535754	ENST00000541063		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
5CDS-5UTR	ENST00000535754	ENST00000546308		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
5CDS-5UTR	ENST00000535754	ENST00000464189		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
intron-3CDS	ENST00000564259	ENST00000340170		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
intron-3CDS	ENST00000564259	ENST00000263208		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
intron-5UTR	ENST00000564259	ENST00000541063		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
intron-5UTR	ENST00000564259	ENST00000546308		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
intron-5UTR	ENST00000564259	ENST00000464189		TCGA	RV	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	HIRA	chr22	19398301	-
In-frame	ENST00000329474	ENST00000244527		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
In-frame	ENST00000329474	ENST00000427328		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
In-frame	ENST00000329474	ENST00000476801		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
In-frame	ENST00000329474	ENST00000468082		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
5UTR-3CDS	ENST00000377969	ENST00000244527		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
5UTR-3CDS	ENST00000377969	ENST00000427328		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
5UTR-3CDS	ENST00000377969	ENST00000476801		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
5UTR-3CDS	ENST00000377969	ENST00000468082		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
intron-3CDS	ENST00000476458	ENST00000244527		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
intron-3CDS	ENST00000476458	ENST00000427328		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
intron-3CDS	ENST00000476458	ENST00000476801		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
intron-3CDS	ENST00000476458	ENST00000468082		TCGA	RV	LUAD	TCGA-49-4487-01A	LRRC16A	chr6	25285137	+	SLC17A1	chr6	25820143	-
5CDS-5UTR	ENST00000217246	ENST00000539805		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000217246	ENST00000480436		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000217246	ENST00000337743		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000217246	ENST00000544472		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000310348	ENST00000539805		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000310348	ENST00000480436		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000310348	ENST00000337743		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5CDS-5UTR	ENST00000310348	ENST00000544472		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000464883	ENST00000539805		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000464883	ENST00000480436		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000464883	ENST00000337743		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000464883	ENST00000544472		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5UTR-5UTR	ENST00000402914	ENST00000539805		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5UTR-5UTR	ENST00000402914	ENST00000480436		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5UTR-5UTR	ENST00000402914	ENST00000337743		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
5UTR-5UTR	ENST00000402914	ENST00000544472		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000378058	ENST00000539805		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000378058	ENST00000480436		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000378058	ENST00000337743		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000378058	ENST00000544472		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000407045	ENST00000539805		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000407045	ENST00000480436		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000407045	ENST00000337743		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
intron-5UTR	ENST00000407045	ENST00000544472		TCGA	RV	LUAD	TCGA-64-1681-01A	MACROD2	chr20	15480492	+	TASP1	chr20	13610799	-
Frame-shit	ENST00000383737	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000395734	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000426837	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000360240	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000439356	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000264724	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000420772	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000441748	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000462206	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000434267	ENST00000434006		TCGA	RV	LUAD	TCGA-55-A48Y-01A	MAP4	chr3	48040128	-	SPINK8	chr3	48351436	-
In-frame	ENST00000263881	ENST00000513293		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
Frame-shit	ENST00000263881	ENST00000495827		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
5CDS-intron	ENST00000263881	ENST00000488436		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000437545	ENST00000513293		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000437545	ENST00000495827		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-intron	ENST00000437545	ENST00000488436		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
In-frame	ENST00000341681	ENST00000513293		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
Frame-shit	ENST00000341681	ENST00000495827		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
5CDS-intron	ENST00000341681	ENST00000488436		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
In-frame	ENST00000484274	ENST00000513293		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
Frame-shit	ENST00000484274	ENST00000495827		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
5CDS-intron	ENST00000484274	ENST00000488436		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000536018	ENST00000513293		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000536018	ENST00000495827		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-intron	ENST00000536018	ENST00000488436		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000474502	ENST00000513293		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000474502	ENST00000495827		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
intron-intron	ENST00000474502	ENST00000488436		TCGA	RV	LUAD	TCGA-67-3770-01A	MAP4K3	chr2	39664033	-	PTPLAD2	chr9	21029397	-
5CDS-3UTR	ENST00000425019	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000425019	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000425019	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000324219	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000324219	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000324219	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000350198	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000350198	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000350198	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000302217	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000302217	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000302217	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000413150	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000413150	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000413150	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000347699	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000347699	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000347699	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000456652	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000456652	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000456652	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000350878	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000350878	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000350878	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000498066	ENST00000547990		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000498066	ENST00000546809		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000498066	ENST00000308796		TCGA	RV	LUAD	TCGA-53-7813-01A	MAP4K4	chr2	102315000	+	MUCL1	chr12	55248900	+
Frame-shit	ENST00000404260	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000404260	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000404260	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000404260	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000404260	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000404260	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000403625	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000403625	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000403625	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000403625	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000403625	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000403625	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000406374	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000406374	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000406374	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000406374	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000406374	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000406374	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000406039	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000406039	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000406039	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000406039	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000406039	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000406039	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000478569	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000478569	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000478569	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000478569	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000478569	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000478569	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000490016	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000490016	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000490016	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000490016	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000490016	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000490016	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000403666	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000403666	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000403666	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000403666	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000403666	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000403666	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000405643	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000405643	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000405643	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000405643	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000405643	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000405643	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000261569	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000261569	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
Frame-shit	ENST00000261569	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000261569	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000261569	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
5CDS-intron	ENST00000261569	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000407621	ENST00000261413		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000407621	ENST00000457646		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000407621	ENST00000513900		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000407621	ENST00000515404		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000407621	ENST00000522562		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-intron	ENST00000407621	ENST00000522095		TCGA	RV	LUAD	TCGA-49-4514-01A	MAST4	chr5	66396420	+	MRPS27	chr5	71516975	-
intron-3CDS	ENST00000568630	ENST00000251203		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	PBX4	chr19	19681642	-
Frame-shit	ENST00000545763	ENST00000251203		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	PBX4	chr19	19681642	-
Frame-shit	ENST00000389936	ENST00000251203		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	PBX4	chr19	19681642	-
Frame-shit	ENST00000219905	ENST00000251203		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	PBX4	chr19	19681642	-
Frame-shit	ENST00000566586	ENST00000251203		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	PBX4	chr19	19681642	-
Frame-shit	ENST00000570161	ENST00000251203		TCGA	RV	LUAD	TCGA-67-3773-01A	MGA	chr15	41962156	+	PBX4	chr19	19681642	-
3UTR-3CDS	ENST00000578646	ENST00000300413		TCGA	RV	LUAD	TCGA-44-4112-01A	MIB1	chr18	19359646	+	SNRPD1	chr18	19202686	+
3UTR-3CDS	ENST00000578646	ENST00000579618		TCGA	RV	LUAD	TCGA-44-4112-01A	MIB1	chr18	19359646	+	SNRPD1	chr18	19202686	+
3UTR-intron	ENST00000578646	ENST00000582475		TCGA	RV	LUAD	TCGA-44-4112-01A	MIB1	chr18	19359646	+	SNRPD1	chr18	19202686	+
In-frame	ENST00000261537	ENST00000300413		TCGA	RV	LUAD	TCGA-44-4112-01A	MIB1	chr18	19359646	+	SNRPD1	chr18	19202686	+
In-frame	ENST00000261537	ENST00000579618		TCGA	RV	LUAD	TCGA-44-4112-01A	MIB1	chr18	19359646	+	SNRPD1	chr18	19202686	+
5CDS-intron	ENST00000261537	ENST00000582475		TCGA	RV	LUAD	TCGA-44-4112-01A	MIB1	chr18	19359646	+	SNRPD1	chr18	19202686	+
5CDS-intron	ENST00000536774	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000536774	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000536774	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000327441	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000327441	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000539062	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000539062	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556451	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000556451	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396294	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000396294	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000545536	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000545536	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000537471	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000537471	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000551492		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000346562		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000341321		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000548645		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000356141		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000357798		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000547068		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-intron	ENST00000539174	ENST00000551008		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
intron-3UTR	ENST00000539174	ENST00000550662		TCGA	RV	LUAD	TCGA-86-8358-01A	MIPOL1	chr14	37777724	+	NPAS3	chr14	34081611	+
5UTR-3CDS	ENST00000355630	ENST00000370073		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370071		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370074		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370070		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370061		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370072		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000542803		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370068		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370067		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370065		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000355630	ENST00000370066		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-intron	ENST00000355630	ENST00000477948		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370073		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370071		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370074		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370070		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370061		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370072		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000542803		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370068		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370067		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370065		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000396617	ENST00000370066		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-intron	ENST00000396617	ENST00000477948		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370073		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370071		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370074		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370070		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370061		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370072		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000542803		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370068		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370067		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370065		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000402042	ENST00000370066		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-intron	ENST00000402042	ENST00000477948		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370073		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370071		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370074		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370070		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370061		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370072		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000542803		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370068		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370067		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370065		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-3CDS	ENST00000466278	ENST00000370066		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
5UTR-intron	ENST00000466278	ENST00000477948		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370073		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370071		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370074		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370070		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370061		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370072		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000542803		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370068		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370067		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370065		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000407029	ENST00000370066		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-intron	ENST00000407029	ENST00000477948		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370073		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370071		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370074		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370070		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370061		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370072		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000542803		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370068		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370067		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370065		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-3CDS	ENST00000402630	ENST00000370066		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
intron-intron	ENST00000402630	ENST00000477948		TCGA	RV	LUAD	TCGA-69-7979-01A	MKL1	chr22	41032482	-	NTNG1	chr1	107937776	+
Frame-shit	ENST00000446906	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000446906	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377072	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377072	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000307729	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000307729	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377059	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377059	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
3UTR-3CDS	ENST00000495130	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
3UTR-3CDS	ENST00000495130	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377100	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377100	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377091	ENST00000609713		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
Frame-shit	ENST00000377091	ENST00000288309		TCGA	RV	LUAD	TCGA-O1-A52J-01A	MLLT10	chr10	21827841	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000261681	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000261681	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000261681	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000261681	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000261681	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000555925	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000555925	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000555925	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000555925	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000555925	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-intron	ENST00000554911	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-intron	ENST00000554911	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-intron	ENST00000554911	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
Frame-shit	ENST00000556345	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
Frame-shit	ENST00000556345	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000556345	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000556345	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000556345	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-02A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000450904	ENST00000294304		TCGA	RV	LUAD	TCGA-91-6831-01A	MRPL21	chr11	68663983	-	LRP5	chr11	68115315	+
5CDS-intron	ENST00000450904	ENST00000529481		TCGA	RV	LUAD	TCGA-91-6831-01A	MRPL21	chr11	68663983	-	LRP5	chr11	68115315	+
Frame-shit	ENST00000362034	ENST00000294304		TCGA	RV	LUAD	TCGA-91-6831-01A	MRPL21	chr11	68663983	-	LRP5	chr11	68115315	+
5CDS-intron	ENST00000362034	ENST00000529481		TCGA	RV	LUAD	TCGA-91-6831-01A	MRPL21	chr11	68663983	-	LRP5	chr11	68115315	+
In-frame	ENST00000567045	ENST00000294304		TCGA	RV	LUAD	TCGA-91-6831-01A	MRPL21	chr11	68663983	-	LRP5	chr11	68115315	+
5CDS-intron	ENST00000567045	ENST00000529481		TCGA	RV	LUAD	TCGA-91-6831-01A	MRPL21	chr11	68663983	-	LRP5	chr11	68115315	+
In-frame	ENST00000580900	ENST00000272427		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
5CDS-intron	ENST00000580900	ENST00000490919		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
5CDS-intron	ENST00000580900	ENST00000410104		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
In-frame	ENST00000380172	ENST00000272427		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
5CDS-intron	ENST00000380172	ENST00000490919		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
5CDS-intron	ENST00000380172	ENST00000410104		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
In-frame	ENST00000460874	ENST00000272427		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
5CDS-intron	ENST00000460874	ENST00000490919		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
5CDS-intron	ENST00000460874	ENST00000410104		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
intron-3CDS	ENST00000427788	ENST00000272427		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
intron-intron	ENST00000427788	ENST00000490919		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
intron-intron	ENST00000427788	ENST00000410104		TCGA	RV	LUAD	TCGA-97-8176-01A	MTAP	chr9	21854869	+	EXOC6B	chr2	72606999	-
intron-3CDS	ENST00000368395	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
intron-3CDS	ENST00000368395	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000338684	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000338684	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000438413	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000438413	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000457295	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000457295	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
5UTR-3CDS	ENST00000462215	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
5UTR-3CDS	ENST00000462215	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368392	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368392	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368393	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368393	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368390	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368390	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368396	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368396	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000343256	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000343256	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368398	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368398	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368389	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000368389	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000342482	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000342482	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000337604	ENST00000392414		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
In-frame	ENST00000337604	ENST00000342741		TCGA	RV	LUAD	TCGA-91-A4BD-01A	MUC1	chr1	155161974	-	PKLR	chr1	155263381	-
Frame-shit	ENST00000253719	ENST00000508628		TCGA	RV	LUAD	TCGA-55-A494-01A	NAPSA	chr19	50861735	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000253719	ENST00000456466		TCGA	RV	LUAD	TCGA-55-A494-01A	NAPSA	chr19	50861735	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000253719	ENST00000582970		TCGA	RV	LUAD	TCGA-55-A494-01A	NAPSA	chr19	50861735	-	RNF213	chr17	78261614	+
Frame-shit	ENST00000253719	ENST00000319921		TCGA	RV	LUAD	TCGA-55-A494-01A	NAPSA	chr19	50861735	-	RNF213	chr17	78261614	+
5CDS-intron	ENST00000253719	ENST00000336301		TCGA	RV	LUAD	TCGA-55-A494-01A	NAPSA	chr19	50861735	-	RNF213	chr17	78261614	+
5CDS-intron	ENST00000253719	ENST00000427003		TCGA	RV	LUAD	TCGA-55-A494-01A	NAPSA	chr19	50861735	-	RNF213	chr17	78261614	+
intron-3CDS	ENST00000593786	ENST00000335351		TCGA	RV	LUAD	TCGA-05-4244-01A	NCOA6	chr20	33324494	-	TCFL5	chr20	61473449	-
intron-intron	ENST00000593786	ENST00000217162		TCGA	RV	LUAD	TCGA-05-4244-01A	NCOA6	chr20	33324494	-	TCFL5	chr20	61473449	-
In-frame	ENST00000374796	ENST00000335351		TCGA	RV	LUAD	TCGA-05-4244-01A	NCOA6	chr20	33324494	-	TCFL5	chr20	61473449	-
5CDS-intron	ENST00000374796	ENST00000217162		TCGA	RV	LUAD	TCGA-05-4244-01A	NCOA6	chr20	33324494	-	TCFL5	chr20	61473449	-
In-frame	ENST00000359003	ENST00000335351		TCGA	RV	LUAD	TCGA-05-4244-01A	NCOA6	chr20	33324494	-	TCFL5	chr20	61473449	-
5CDS-intron	ENST00000359003	ENST00000217162		TCGA	RV	LUAD	TCGA-05-4244-01A	NCOA6	chr20	33324494	-	TCFL5	chr20	61473449	-
intron-3CDS	ENST00000312156	ENST00000337288		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
intron-5UTR	ENST00000312156	ENST00000462501		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
intron-3CDS	ENST00000435572	ENST00000337288		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
intron-5UTR	ENST00000435572	ENST00000462501		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
intron-3CDS	ENST00000540264	ENST00000337288		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
intron-5UTR	ENST00000540264	ENST00000462501		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
5UTR-3CDS	ENST00000553070	ENST00000337288		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
5UTR-5UTR	ENST00000553070	ENST00000462501		TCGA	RV	LUAD	TCGA-91-7771-01A	NFE2	chr12	54693931	-	STARD7	chr2	96853039	-
intron-3CDS	ENST00000551492	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000551492	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000551492	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-intron	ENST00000551492	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000346562	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000346562	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000346562	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000346562	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000341321	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000341321	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000341321	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000341321	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000548645	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000548645	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000548645	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000548645	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000356141	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000356141	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000356141	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000356141	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000357798	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000357798	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
Frame-shit	ENST00000357798	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000357798	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000547068	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000547068	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000547068	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-intron	ENST00000547068	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000551008	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000551008	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000551008	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-intron	ENST00000551008	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000550662	ENST00000280979		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000550662	ENST00000557354		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000550662	ENST00000557272		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
intron-intron	ENST00000550662	ENST00000554449		TCGA	RV	LUAD	TCGA-55-7913-01B	NPAS3	chr14	33408572	+	AKAP6	chr14	33147517	+
In-frame	ENST00000524800	ENST00000367287		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000524800	ENST00000482943		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000367900	ENST00000367287		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000367900	ENST00000482943		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000271452	ENST00000367287		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000271452	ENST00000482943		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
intron-3CDS	ENST00000490881	ENST00000367287		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
intron-intron	ENST00000490881	ENST00000482943		TCGA	RV	LUAD	TCGA-78-7159-01A	NUF2	chr1	163317728	+	TIMM17A	chr1	201926409	+
Frame-shit	ENST00000285968	ENST00000378685		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
Frame-shit	ENST00000285968	ENST00000464832		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
Frame-shit	ENST00000285968	ENST00000487361		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
Frame-shit	ENST00000285968	ENST00000297788		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
5CDS-intron	ENST00000285968	ENST00000471729		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000440390	ENST00000378685		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000440390	ENST00000464832		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000440390	ENST00000487361		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000440390	ENST00000297788		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-intron	ENST00000440390	ENST00000471729		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000489493	ENST00000378685		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000489493	ENST00000464832		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000489493	ENST00000487361		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-3CDS	ENST00000489493	ENST00000297788		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
intron-intron	ENST00000489493	ENST00000471729		TCGA	RV	LUAD	TCGA-95-7944-01A	NUP205	chr7	135310103	+	CCDC136	chr7	128441240	+
Frame-shit	ENST00000296220	ENST00000290913		TCGA	RV	LUAD	TCGA-78-7147-01A	OSBPL11	chr3	125266250	-	CHCHD6	chr3	126571487	+
Frame-shit	ENST00000296220	ENST00000508789		TCGA	RV	LUAD	TCGA-78-7147-01A	OSBPL11	chr3	125266250	-	CHCHD6	chr3	126571487	+
5CDS-intron	ENST00000296220	ENST00000515867		TCGA	RV	LUAD	TCGA-78-7147-01A	OSBPL11	chr3	125266250	-	CHCHD6	chr3	126571487	+
5CDS-intron	ENST00000474629	ENST00000539805		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
5CDS-5UTR	ENST00000474629	ENST00000480436		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
5CDS-5UTR	ENST00000474629	ENST00000337743		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
5CDS-intron	ENST00000474629	ENST00000544472		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
intron-intron	ENST00000475640	ENST00000539805		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
intron-5UTR	ENST00000475640	ENST00000480436		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
intron-5UTR	ENST00000475640	ENST00000337743		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
intron-intron	ENST00000475640	ENST00000544472		TCGA	RV	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13514788	-
In-frame	ENST00000339082	ENST00000391965		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000339082	ENST00000525771		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000339082	ENST00000533118		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000339082	ENST00000528387		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000339082	ENST00000529930		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000339082	ENST00000336564		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000601723	ENST00000391965		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000601723	ENST00000525771		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000601723	ENST00000533118		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000601723	ENST00000528387		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000601723	ENST00000529930		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000601723	ENST00000336564		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000340093	ENST00000391965		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000340093	ENST00000525771		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000340093	ENST00000533118		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000340093	ENST00000528387		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000340093	ENST00000529930		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000340093	ENST00000336564		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000221264	ENST00000391965		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000221264	ENST00000525771		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
In-frame	ENST00000221264	ENST00000533118		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000221264	ENST00000528387		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000221264	ENST00000529930		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000221264	ENST00000336564		TCGA	RV	LUAD	TCGA-NJ-A4YQ-01A	PLAUR	chr19	44169468	-	ZNF576	chr19	44102983	+
Frame-shit	ENST00000359376	ENST00000566780		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000359376	ENST00000406884		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
In-frame	ENST00000359376	ENST00000539474		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000359376	ENST00000402655		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000359376	ENST00000408984		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000359376	ENST00000355860		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000359376	ENST00000565791		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000359376	ENST00000569818		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000565400	ENST00000566780		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000565400	ENST00000406884		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000565400	ENST00000539474		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000565400	ENST00000402655		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-intron	ENST00000565400	ENST00000408984		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-intron	ENST00000565400	ENST00000355860		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-intron	ENST00000565400	ENST00000565791		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-intron	ENST00000565400	ENST00000569818		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PLCG2	chr16	81904540	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000409895	ENST00000272286		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPM1B	chr2	44445676	+	ABCG8	chr2	44071646	+
In-frame	ENST00000409432	ENST00000272286		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPM1B	chr2	44445676	+	ABCG8	chr2	44071646	+
In-frame	ENST00000282412	ENST00000272286		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPM1B	chr2	44445676	+	ABCG8	chr2	44071646	+
In-frame	ENST00000378551	ENST00000272286		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPM1B	chr2	44445676	+	ABCG8	chr2	44071646	+
3UTR-3CDS	ENST00000378540	ENST00000272286		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPM1B	chr2	44445676	+	ABCG8	chr2	44071646	+
In-frame	ENST00000345249	ENST00000272286		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	PPM1B	chr2	44445676	+	ABCG8	chr2	44071646	+
intron-5UTR	ENST00000380393	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000380393	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000380393	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000380393	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-intron	ENST00000380393	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000216877	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000216877	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000216877	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000216877	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000216877	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000358719	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000358719	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000358719	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000358719	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000358719	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000399903	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000399903	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000399903	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000399903	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000399903	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000425918	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000425918	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000425918	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000425918	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000425918	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000318266	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000318266	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000318266	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-5UTR	ENST00000318266	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5UTR-intron	ENST00000318266	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000356147	ENST00000394395		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000356147	ENST00000586023		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000356147	ENST00000225396		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-5UTR	ENST00000356147	ENST00000417170		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
intron-intron	ENST00000356147	ENST00000591992		TCGA	RV	LUAD	TCGA-97-A4LX-01A	PTPRA	chr20	2854406	+	TADA2A	chr17	35771356	+
5CDS-intron	ENST00000274376	ENST00000307968		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5CDS-intron	ENST00000274376	ENST00000307954		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5CDS-intron	ENST00000274376	ENST00000510461		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5CDS-intron	ENST00000274376	ENST00000511848		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000456692	ENST00000307968		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000456692	ENST00000307954		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000456692	ENST00000510461		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000456692	ENST00000511848		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000512763	ENST00000307968		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000512763	ENST00000307954		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000512763	ENST00000510461		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000512763	ENST00000511848		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000506290	ENST00000307968		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000506290	ENST00000307954		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000506290	ENST00000510461		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
5UTR-intron	ENST00000506290	ENST00000511848		TCGA	RV	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	FNIP1	chr5	130782396	-
Frame-shit	ENST00000452898	ENST00000514251		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000452898	ENST00000321464		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000452898	ENST00000441582		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
5CDS-intron	ENST00000452898	ENST00000512327		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000286364	ENST00000514251		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000286364	ENST00000321464		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
Frame-shit	ENST00000286364	ENST00000441582		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
5CDS-intron	ENST00000286364	ENST00000512327		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-3CDS	ENST00000509118	ENST00000514251		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-3CDS	ENST00000509118	ENST00000321464		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-3CDS	ENST00000509118	ENST00000441582		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
intron-intron	ENST00000509118	ENST00000512327		TCGA	RV	LUAD	TCGA-05-4427-01A	RASA2	chr3	141206058	+	ZBTB38	chr3	141161231	+
In-frame	ENST00000448150	ENST00000506823		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
In-frame	ENST00000448150	ENST00000508122		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
5CDS-intron	ENST00000448150	ENST00000457021		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
5CDS-intron	ENST00000448150	ENST00000511251		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
In-frame	ENST00000367649	ENST00000506823		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
In-frame	ENST00000367649	ENST00000508122		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
5CDS-intron	ENST00000367649	ENST00000457021		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
5CDS-intron	ENST00000367649	ENST00000511251		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000465723	ENST00000506823		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000465723	ENST00000508122		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-intron	ENST00000465723	ENST00000457021		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-intron	ENST00000465723	ENST00000511251		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000462775	ENST00000506823		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000462775	ENST00000508122		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-intron	ENST00000462775	ENST00000457021		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-intron	ENST00000462775	ENST00000511251		TCGA	RV	LUAD	TCGA-78-8640-01A	RASAL2	chr1	178269253	+	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000374140	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000374140	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000350696	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000350696	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
Frame-shit	ENST00000317613	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
5CDS-intron	ENST00000317613	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000343817	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000343817	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000394646	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000394646	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000374136	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000374136	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000462143	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000462143	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000463806	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000463806	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000342620	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000342620	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000374134	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000374134	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-3CDS	ENST00000462403	ENST00000374183		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
intron-intron	ENST00000462403	ENST00000462085		TCGA	RV	LUAD	TCGA-05-4427-01A	RGS3	chr9	116226161	+	BSPRY	chr9	116130539	+
Frame-shit	ENST00000261593	ENST00000217740		TCGA	RV	LUAD	TCGA-86-8673-01A	RNF138	chr18	29672849	+	RNF125	chr18	29645865	+
5CDS-3UTR	ENST00000261593	ENST00000583384		TCGA	RV	LUAD	TCGA-86-8673-01A	RNF138	chr18	29672849	+	RNF125	chr18	29645865	+
3UTR-3CDS	ENST00000585103	ENST00000217740		TCGA	RV	LUAD	TCGA-86-8673-01A	RNF138	chr18	29672849	+	RNF125	chr18	29645865	+
3UTR-3UTR	ENST00000585103	ENST00000583384		TCGA	RV	LUAD	TCGA-86-8673-01A	RNF138	chr18	29672849	+	RNF125	chr18	29645865	+
Frame-shit	ENST00000257190	ENST00000217740		TCGA	RV	LUAD	TCGA-86-8673-01A	RNF138	chr18	29672849	+	RNF125	chr18	29645865	+
5CDS-3UTR	ENST00000257190	ENST00000583384		TCGA	RV	LUAD	TCGA-86-8673-01A	RNF138	chr18	29672849	+	RNF125	chr18	29645865	+
In-frame	ENST00000336095	ENST00000460006		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000336095	ENST00000379062		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000336095	ENST00000379070		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000336095	ENST00000535100		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000358395	ENST00000460006		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000358395	ENST00000379062		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000358395	ENST00000379070		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000358395	ENST00000535100		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
In-frame	ENST00000432261	ENST00000460006		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000432261	ENST00000379062		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000432261	ENST00000379070		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000432261	ENST00000535100		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000545616	ENST00000460006		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000545616	ENST00000379062		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000545616	ENST00000379070		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000545616	ENST00000535100		TCGA	RV	LUAD	TCGA-78-7145-01A	RNF24	chr20	3925824	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000399799	ENST00000269216		TCGA	RV	LUAD	TCGA-44-A47G-01A	ROCK1	chr18	18690779	-	GATA6	chr18	19780619	+
In-frame	ENST00000399799	ENST00000581694		TCGA	RV	LUAD	TCGA-44-A47G-01A	ROCK1	chr18	18690779	-	GATA6	chr18	19780619	+
5UTR-3CDS	ENST00000543470	ENST00000355875		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
5UTR-3CDS	ENST00000543470	ENST00000366541		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
5UTR-3CDS	ENST00000543470	ENST00000343783		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
5UTR-intron	ENST00000543470	ENST00000391846		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
5UTR-intron	ENST00000543470	ENST00000496361		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
In-frame	ENST00000366960	ENST00000355875		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
In-frame	ENST00000366960	ENST00000366541		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
In-frame	ENST00000366960	ENST00000343783		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000366960	ENST00000391846		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000366960	ENST00000496361		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000366959	ENST00000355875		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000366959	ENST00000366541		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000366959	ENST00000343783		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000366959	ENST00000391846		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000366959	ENST00000496361		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000543354	ENST00000355875		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000543354	ENST00000366541		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000543354	ENST00000343783		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000543354	ENST00000391846		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000543354	ENST00000496361		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000490299	ENST00000355875		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000490299	ENST00000366541		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000490299	ENST00000343783		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000490299	ENST00000391846		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000490299	ENST00000496361		TCGA	RV	LUAD	TCGA-55-8620-01A	RPS6KC1	chr1	213244383	+	SDCCAG8	chr1	243493842	+
intron-3UTR	ENST00000470422	ENST00000539805		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
intron-5UTR	ENST00000470422	ENST00000480436		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
intron-5UTR	ENST00000470422	ENST00000337743		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
intron-intron	ENST00000470422	ENST00000544472		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000246043	ENST00000539805		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000246043	ENST00000480436		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000246043	ENST00000337743		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000246043	ENST00000544472		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000377813	ENST00000539805		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377813	ENST00000480436		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377813	ENST00000337743		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000377813	ENST00000544472		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000377807	ENST00000539805		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377807	ENST00000480436		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377807	ENST00000337743		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000377807	ENST00000544472		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000360807	ENST00000539805		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000360807	ENST00000480436		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000360807	ENST00000337743		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000360807	ENST00000544472		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000455029	ENST00000539805		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000455029	ENST00000480436		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000455029	ENST00000337743		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000455029	ENST00000544472		TCGA	RV	LUAD	TCGA-50-5072-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
Frame-shit	ENST00000372733	ENST00000308724		TCGA	RV	LUAD	TCGA-97-8171-01A	SDC4	chr20	43953928	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000372733	ENST00000397120		TCGA	RV	LUAD	TCGA-97-8171-01A	SDC4	chr20	43953928	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000372733	ENST00000556277		TCGA	RV	LUAD	TCGA-97-8171-01A	SDC4	chr20	43953928	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000537976	ENST00000308724		TCGA	RV	LUAD	TCGA-97-8171-01A	SDC4	chr20	43953928	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000537976	ENST00000397120		TCGA	RV	LUAD	TCGA-97-8171-01A	SDC4	chr20	43953928	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000537976	ENST00000556277		TCGA	RV	LUAD	TCGA-97-8171-01A	SDC4	chr20	43953928	-	AP1G2	chr14	24037279	-
In-frame	ENST00000392476	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000392476	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000392476	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000430767	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000430767	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000430767	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000564509	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000564509	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000564509	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000585618	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000585618	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000585618	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000413679	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000413679	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000413679	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000436233	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000436233	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000436233	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000443798	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000443798	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
In-frame	ENST00000443798	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000591437	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000591437	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000591437	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000431431	ENST00000225614		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000431431	ENST00000588479		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000431431	ENST00000437911		TCGA	RV	LUAD	TCGA-50-6590-01A	SEC14L1	chr17	75139741	+	GALK1	chr17	73760167	-
intron-3CDS	ENST00000519937	ENST00000442528		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000519937	ENST00000456334		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000519937	ENST00000314134		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000342375	ENST00000442528		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000342375	ENST00000456334		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000342375	ENST00000314134		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000393822	ENST00000442528		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000393822	ENST00000456334		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000393822	ENST00000314134		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000409383	ENST00000442528		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000409383	ENST00000456334		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
intron-3CDS	ENST00000409383	ENST00000314134		TCGA	RV	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85885766	-	SLC35C1	chr11	45832327	+
5CDS-5UTR	ENST00000361781	ENST00000340149		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000361781	ENST00000361507		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000361781	ENST00000526030		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000429490	ENST00000340149		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000429490	ENST00000361507		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
5CDS-5UTR	ENST00000429490	ENST00000526030		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000492601	ENST00000340149		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000492601	ENST00000361507		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000492601	ENST00000526030		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000361543	ENST00000340149		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000361543	ENST00000361507		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
intron-5UTR	ENST00000361543	ENST00000526030		TCGA	RV	LUAD	TCGA-64-1681-01A	SGMS1	chr10	52086965	-	GAB2	chr11	77991947	-
Frame-shit	ENST00000380913	ENST00000242728		TCGA	RV	LUAD	TCGA-73-4662-01A	SHROOM2	chrX	9754750	+	BHLHE41	chr12	26277515	-
intron-3CDS	ENST00000493668	ENST00000242728		TCGA	RV	LUAD	TCGA-73-4662-01A	SHROOM2	chrX	9754750	+	BHLHE41	chr12	26277515	-
intron-3CDS	ENST00000418909	ENST00000242728		TCGA	RV	LUAD	TCGA-73-4662-01A	SHROOM2	chrX	9754750	+	BHLHE41	chr12	26277515	-
In-frame	ENST00000369626	ENST00000370010		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
In-frame	ENST00000369626	ENST00000370014		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
In-frame	ENST00000369626	ENST00000447266		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000369626	ENST00000541192		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000369626	ENST00000327284		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000369626	ENST00000436928		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
In-frame	ENST00000538576	ENST00000370010		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
In-frame	ENST00000538576	ENST00000370014		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
In-frame	ENST00000538576	ENST00000447266		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000538576	ENST00000541192		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000538576	ENST00000327284		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000538576	ENST00000436928		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
Frame-shit	ENST00000433570	ENST00000370010		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
Frame-shit	ENST00000433570	ENST00000370014		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
Frame-shit	ENST00000433570	ENST00000447266		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000433570	ENST00000541192		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000433570	ENST00000327284		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
5CDS-intron	ENST00000433570	ENST00000436928		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
intron-3CDS	ENST00000478835	ENST00000370010		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
intron-3CDS	ENST00000478835	ENST00000370014		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
intron-3CDS	ENST00000478835	ENST00000447266		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
intron-intron	ENST00000478835	ENST00000541192		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
intron-intron	ENST00000478835	ENST00000327284		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
intron-intron	ENST00000478835	ENST00000436928		TCGA	RV	LUAD	TCGA-44-2668-01A	SLC16A1	chr1	113471714	-	SENP6	chr6	76331248	+
In-frame	ENST00000343605	ENST00000312932		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000343605	ENST00000403484		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000343605	ENST00000405717		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000343605	ENST00000402592		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-3UTR	ENST00000343605	ENST00000459728		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
In-frame	ENST00000300385	ENST00000312932		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000300385	ENST00000403484		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000300385	ENST00000405717		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000300385	ENST00000402592		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-3UTR	ENST00000300385	ENST00000459728		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
In-frame	ENST00000406566	ENST00000312932		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000406566	ENST00000403484		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000406566	ENST00000405717		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-5UTR	ENST00000406566	ENST00000402592		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
5CDS-3UTR	ENST00000406566	ENST00000459728		TCGA	RV	LUAD	TCGA-49-AARE-01A	SLC35E4	chr22	31033056	+	SEC14L2	chr22	30802331	+
intron-3CDS	ENST00000372307	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000372307	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-intron	ENST00000372307	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000372306	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000372306	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-intron	ENST00000372306	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000372310	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000372310	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-intron	ENST00000372310	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000475075	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000475075	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-intron	ENST00000475075	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000360584	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000360584	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-intron	ENST00000360584	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000357730	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-3CDS	ENST00000357730	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
intron-intron	ENST00000357730	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000537678	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000537678	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-intron	ENST00000537678	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000492434	ENST00000360403		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-3CDS	ENST00000492434	ENST00000372183		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
5UTR-intron	ENST00000492434	ENST00000480675		TCGA	RV	LUAD	TCGA-44-3917-01A	SLC6A9	chr1	44496978	-	EIF2B3	chr1	45363116	-
In-frame	ENST00000355937	ENST00000291574		TCGA	RV	LUAD	TCGA-44-A479-01A	SLMO2	chr20	57617754	-	TRAPPC10	chr21	45494920	+
5CDS-intron	ENST00000355937	ENST00000380221		TCGA	RV	LUAD	TCGA-44-A479-01A	SLMO2	chr20	57617754	-	TRAPPC10	chr21	45494920	+
5CDS-intron	ENST00000355937	ENST00000483973		TCGA	RV	LUAD	TCGA-44-A479-01A	SLMO2	chr20	57617754	-	TRAPPC10	chr21	45494920	+
In-frame	ENST00000371033	ENST00000291574		TCGA	RV	LUAD	TCGA-44-A479-01A	SLMO2	chr20	57617754	-	TRAPPC10	chr21	45494920	+
5CDS-intron	ENST00000371033	ENST00000380221		TCGA	RV	LUAD	TCGA-44-A479-01A	SLMO2	chr20	57617754	-	TRAPPC10	chr21	45494920	+
5CDS-intron	ENST00000371033	ENST00000483973		TCGA	RV	LUAD	TCGA-44-A479-01A	SLMO2	chr20	57617754	-	TRAPPC10	chr21	45494920	+
Frame-shit	ENST00000361368	ENST00000356767		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000361368	ENST00000393735		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000361368	ENST00000339444		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000393730		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000306312		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000432958		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000354356		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000393729		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000393727		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361368	ENST00000393723		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000361125	ENST00000356767		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000361125	ENST00000393735		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000361125	ENST00000339444		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000393730		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000306312		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000432958		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000354356		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000393729		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000393727		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000361125	ENST00000393723		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000480055	ENST00000356767		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000480055	ENST00000393735		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000480055	ENST00000339444		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393730		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000306312		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000432958		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000354356		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393729		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393727		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393723		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000541742	ENST00000334232		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
intron-3CDS	ENST00000541742	ENST00000359362		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
5UTR-3CDS	ENST00000490107	ENST00000334232		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
5UTR-3CDS	ENST00000490107	ENST00000359362		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000388985	ENST00000334232		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000388985	ENST00000359362		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
intron-3CDS	ENST00000366517	ENST00000334232		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
intron-3CDS	ENST00000366517	ENST00000359362		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000403792	ENST00000334232		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
Frame-shit	ENST00000403792	ENST00000359362		TCGA	RV	LUAD	TCGA-05-4250-01A	SMYD3	chr1	246670356	-	EDARADD	chr1	236572516	+
In-frame	ENST00000244050	ENST00000371419		TCGA	RV	LUAD	TCGA-50-5072-01A	SNAI1	chr20	48600888	+	PFDN4	chr20	52835558	+
5CDS-3UTR	ENST00000244050	ENST00000487129		TCGA	RV	LUAD	TCGA-50-5072-01A	SNAI1	chr20	48600888	+	PFDN4	chr20	52835558	+
5CDS-5UTR	ENST00000216484	ENST00000482518		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
5CDS-5UTR	ENST00000216484	ENST00000392054		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000216484	ENST00000409462		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000216484	ENST00000392055		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
5CDS-intron	ENST00000216484	ENST00000354069		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
intron-5UTR	ENST00000556264	ENST00000482518		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
intron-5UTR	ENST00000556264	ENST00000392054		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
intron-intron	ENST00000556264	ENST00000409462		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
intron-intron	ENST00000556264	ENST00000392055		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
intron-intron	ENST00000556264	ENST00000354069		TCGA	RV	LUAD	TCGA-49-4507-01A	SPTLC2	chr14	78063529	-	PID1	chr2	230020680	-
In-frame	ENST00000355086	ENST00000412830		TCGA	RV	LUAD	TCGA-O1-A52J-01A	SRGAP1	chr12	64238663	+	PWP1	chr12	108090251	+
In-frame	ENST00000355086	ENST00000541166		TCGA	RV	LUAD	TCGA-O1-A52J-01A	SRGAP1	chr12	64238663	+	PWP1	chr12	108090251	+
In-frame	ENST00000357825	ENST00000412830		TCGA	RV	LUAD	TCGA-O1-A52J-01A	SRGAP1	chr12	64238663	+	PWP1	chr12	108090251	+
In-frame	ENST00000357825	ENST00000541166		TCGA	RV	LUAD	TCGA-O1-A52J-01A	SRGAP1	chr12	64238663	+	PWP1	chr12	108090251	+
intron-3CDS	ENST00000543397	ENST00000412830		TCGA	RV	LUAD	TCGA-O1-A52J-01A	SRGAP1	chr12	64238663	+	PWP1	chr12	108090251	+
intron-3CDS	ENST00000543397	ENST00000541166		TCGA	RV	LUAD	TCGA-O1-A52J-01A	SRGAP1	chr12	64238663	+	PWP1	chr12	108090251	+
In-frame	ENST00000218089	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000218089	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000218089	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000218089	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000218089	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000469481	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000469481	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000469481	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
intron-intron	ENST00000469481	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
intron-intron	ENST00000469481	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000354548	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000354548	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000354548	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000354548	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000354548	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371160	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371160	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371160	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371160	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371160	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371157	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371157	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371157	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371157	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371157	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371145	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371145	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371145	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371145	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371145	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371144	ENST00000300006		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371144	ENST00000566490		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
In-frame	ENST00000371144	ENST00000452191		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371144	ENST00000561692		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000371144	ENST00000565913		TCGA	RV	LUAD	TCGA-69-7979-01A	STAG2	chrX	123220620	+	C16orf45	chr16	15609162	+
5CDS-5UTR	ENST00000419617	ENST00000314393		TCGA	RV	LUAD	TCGA-78-7153-01A	STK3	chr8	99761504	-	ZHX2	chr8	123963532	+
5CDS-5UTR	ENST00000523601	ENST00000314393		TCGA	RV	LUAD	TCGA-78-7153-01A	STK3	chr8	99761504	-	ZHX2	chr8	123963532	+
intron-5UTR	ENST00000521768	ENST00000314393		TCGA	RV	LUAD	TCGA-78-7153-01A	STK3	chr8	99761504	-	ZHX2	chr8	123963532	+
5CDS-5UTR	ENST00000040877	ENST00000334746		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5CDS-intron	ENST00000040877	ENST00000554565		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5CDS-intron	ENST00000040877	ENST00000393170		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5CDS-5UTR	ENST00000040877	ENST00000298896		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5CDS-5UTR	ENST00000040877	ENST00000555525		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5UTR-5UTR	ENST00000483404	ENST00000334746		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5UTR-intron	ENST00000483404	ENST00000554565		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5UTR-intron	ENST00000483404	ENST00000393170		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5UTR-5UTR	ENST00000483404	ENST00000298896		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
5UTR-5UTR	ENST00000483404	ENST00000555525		TCGA	RV	LUAD	TCGA-69-7980-01A	TARBP1	chr1	234529108	-	BTBD7	chr14	93762503	-
In-frame	ENST00000263707	ENST00000409078		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
In-frame	ENST00000263707	ENST00000541859		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
In-frame	ENST00000263707	ENST00000541377		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
In-frame	ENST00000263707	ENST00000455322		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
In-frame	ENST00000263707	ENST00000397587		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
In-frame	ENST00000263707	ENST00000263710		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
In-frame	ENST00000263707	ENST00000545861		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
5CDS-5UTR	ENST00000263707	ENST00000430234		TCGA	RV	LUAD	TCGA-55-8085-01A	TFCP2L1	chr2	122004394	-	CLASP1	chr2	122218769	-
5UTR-intron	ENST00000499247	ENST00000433608		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
5UTR-intron	ENST00000499247	ENST00000393382		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
5UTR-intron	ENST00000499247	ENST00000470462		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
intron-intron	ENST00000268957	ENST00000433608		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
intron-intron	ENST00000268957	ENST00000393382		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
intron-intron	ENST00000268957	ENST00000470462		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
5UTR-intron	ENST00000509385	ENST00000433608		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
5UTR-intron	ENST00000509385	ENST00000393382		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
5UTR-intron	ENST00000509385	ENST00000470462		TCGA	RV	LUAD	TCGA-50-5930-01A	TOB1	chr17	48943419	-	TTLL6	chr17	46882353	-
5CDS-3UTR	ENST00000217233	ENST00000608838		TCGA	RV	LUAD	TCGA-75-6211-01A	TRIB3	chr20	368945	+	DEFB125	chr20	76646	+
5CDS-3UTR	ENST00000217233	ENST00000382410		TCGA	RV	LUAD	TCGA-75-6211-01A	TRIB3	chr20	368945	+	DEFB125	chr20	76646	+
intron-3UTR	ENST00000485293	ENST00000608838		TCGA	RV	LUAD	TCGA-75-6211-01A	TRIB3	chr20	368945	+	DEFB125	chr20	76646	+
intron-3UTR	ENST00000485293	ENST00000382410		TCGA	RV	LUAD	TCGA-75-6211-01A	TRIB3	chr20	368945	+	DEFB125	chr20	76646	+
5CDS-3UTR	ENST00000422053	ENST00000608838		TCGA	RV	LUAD	TCGA-75-6211-01A	TRIB3	chr20	368945	+	DEFB125	chr20	76646	+
5CDS-3UTR	ENST00000422053	ENST00000382410		TCGA	RV	LUAD	TCGA-75-6211-01A	TRIB3	chr20	368945	+	DEFB125	chr20	76646	+
In-frame	ENST00000344204	ENST00000265104		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
5CDS-intron	ENST00000344204	ENST00000504001		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
In-frame	ENST00000537187	ENST00000265104		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
5CDS-intron	ENST00000537187	ENST00000504001		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
In-frame	ENST00000509967	ENST00000265104		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
5CDS-intron	ENST00000509967	ENST00000504001		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000515710	ENST00000265104		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
intron-intron	ENST00000515710	ENST00000504001		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000344135	ENST00000265104		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
intron-intron	ENST00000344135	ENST00000504001		TCGA	RV	LUAD	TCGA-55-7283-01A	TRIO	chr5	14391099	+	DNAH5	chr5	13931353	-
In-frame	ENST00000262376	ENST00000262370		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000262376	ENST00000415496		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000262376	ENST00000399577		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000262376	ENST00000588994		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000262376	ENST00000586183		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
5CDS-intron	ENST00000262376	ENST00000588015		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000545171	ENST00000262370		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000545171	ENST00000415496		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000545171	ENST00000399577		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000545171	ENST00000588994		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000545171	ENST00000586183		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
5CDS-intron	ENST00000545171	ENST00000588015		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000590769	ENST00000262370		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000590769	ENST00000415496		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000590769	ENST00000399577		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000590769	ENST00000588994		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000590769	ENST00000586183		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
5CDS-intron	ENST00000590769	ENST00000588015		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000396658	ENST00000262370		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000396658	ENST00000415496		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000396658	ENST00000399577		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000396658	ENST00000588994		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000396658	ENST00000586183		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
5CDS-intron	ENST00000396658	ENST00000588015		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
intron-3CDS	ENST00000585857	ENST00000262370		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
intron-3CDS	ENST00000585857	ENST00000415496		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
intron-3CDS	ENST00000585857	ENST00000399577		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
intron-3CDS	ENST00000585857	ENST00000588994		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
intron-3CDS	ENST00000585857	ENST00000586183		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
intron-intron	ENST00000585857	ENST00000588015		TCGA	RV	LUAD	TCGA-49-6745-01A	UBN1	chr16	4925435	+	MGRN1	chr16	4731551	+
In-frame	ENST00000374279	ENST00000556107		TCGA	RV	LUAD	TCGA-49-AARE-01A	UGCG	chr9	114677026	+	DNAJC25	chr9	114429095	+
5CDS-intron	ENST00000374279	ENST00000313525		TCGA	RV	LUAD	TCGA-49-AARE-01A	UGCG	chr9	114677026	+	DNAJC25	chr9	114429095	+
3UTR-3CDS	ENST00000495085	ENST00000556107		TCGA	RV	LUAD	TCGA-49-AARE-01A	UGCG	chr9	114677026	+	DNAJC25	chr9	114429095	+
3UTR-intron	ENST00000495085	ENST00000313525		TCGA	RV	LUAD	TCGA-49-AARE-01A	UGCG	chr9	114677026	+	DNAJC25	chr9	114429095	+
Frame-shit	ENST00000396787	ENST00000372907		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
In-frame	ENST00000396787	ENST00000372905		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000396787	ENST00000324762		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000396787	ENST00000356784		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000378495	ENST00000372907		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
In-frame	ENST00000378495	ENST00000372905		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000378495	ENST00000324762		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000378495	ENST00000356784		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000378496	ENST00000372907		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
In-frame	ENST00000378496	ENST00000372905		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000378496	ENST00000324762		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
Frame-shit	ENST00000378496	ENST00000356784		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
intron-3CDS	ENST00000481299	ENST00000372907		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
intron-3CDS	ENST00000481299	ENST00000372905		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
intron-3CDS	ENST00000481299	ENST00000324762		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
intron-3CDS	ENST00000481299	ENST00000356784		TCGA	RV	LUAD	TCGA-05-4382-01A	UNC13B	chr9	35162302	+	TAF7L	chrX	100524225	-
5CDS-5UTR	ENST00000293218	ENST00000361151		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000361451		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000588933		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000588221		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000592904		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000590306		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000592292		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-intron	ENST00000293218	ENST00000588013		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000361151		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000361451		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000588933		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000588221		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000592904		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000590306		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000592292		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-intron	ENST00000589666	ENST00000588013		TCGA	RV	LUAD	TCGA-50-5946-02A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
In-frame	ENST00000609104	ENST00000181796		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000378470		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000468747		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000378467		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000378465		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000378458		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000478076		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000378462		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000496330		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000479731		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000609104	ENST00000471815		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
In-frame	ENST00000277575	ENST00000181796		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000378470		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000468747		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000378467		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000378465		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000378458		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000478076		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000378462		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000496330		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000479731		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000277575	ENST00000471815		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
In-frame	ENST00000379237	ENST00000181796		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000378470		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000468747		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000378467		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000378465		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000378458		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000478076		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000378462		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000496330		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000479731		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000379237	ENST00000471815		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-3CDS	ENST00000443016	ENST00000181796		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000378470		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000468747		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000378467		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000378465		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000378458		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000478076		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000378462		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000496330		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000479731		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000443016	ENST00000471815		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-3CDS	ENST00000609853	ENST00000181796		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000378470		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000468747		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000378467		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000378465		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000378458		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000478076		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000378462		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000496330		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000479731		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
intron-intron	ENST00000609853	ENST00000471815		TCGA	RV	LUAD	TCGA-44-6145-01A	USP6NL	chr10	11560534	-	FAM107B	chr10	14709690	-
Frame-shit	ENST00000339464	ENST00000351989		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000339464	ENST00000383024		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000339464	ENST00000407755		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000409496	ENST00000351989		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000409496	ENST00000383024		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000409496	ENST00000407755		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410089	ENST00000351989		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410089	ENST00000383024		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410089	ENST00000407755		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410058	ENST00000351989		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410058	ENST00000383024		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410058	ENST00000407755		TCGA	RV	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345800	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000434536	ENST00000319349		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000434536	ENST00000393664		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000434536	ENST00000538265		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000434536	ENST00000545954		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000434536	ENST00000545089		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000434536	ENST00000591713		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000434536	ENST00000586826		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000252512	ENST00000319349		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000252512	ENST00000393664		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000252512	ENST00000538265		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000252512	ENST00000545954		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000252512	ENST00000545089		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000252512	ENST00000591713		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000252512	ENST00000586826		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000518017	ENST00000319349		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000518017	ENST00000393664		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000518017	ENST00000538265		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000518017	ENST00000545954		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000518017	ENST00000545089		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000518017	ENST00000591713		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
intron-intron	ENST00000518017	ENST00000586826		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000433566	ENST00000319349		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000433566	ENST00000393664		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000433566	ENST00000538265		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000433566	ENST00000545954		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000433566	ENST00000545089		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000433566	ENST00000591713		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000433566	ENST00000586826		TCGA	RV	LUAD	TCGA-73-4659-01A	XPO7	chr8	21837714	+	ETV4	chr17	41613847	-
In-frame	ENST00000247843	ENST00000398004		TCGA	RV	LUAD	TCGA-78-8662-01A	YEATS4	chr12	69759664	+	SLC35E3	chr12	69152937	+
5CDS-intron	ENST00000247843	ENST00000538043		TCGA	RV	LUAD	TCGA-78-8662-01A	YEATS4	chr12	69759664	+	SLC35E3	chr12	69152937	+
intron-3CDS	ENST00000548020	ENST00000398004		TCGA	RV	LUAD	TCGA-78-8662-01A	YEATS4	chr12	69759664	+	SLC35E3	chr12	69152937	+
intron-intron	ENST00000548020	ENST00000538043		TCGA	RV	LUAD	TCGA-78-8662-01A	YEATS4	chr12	69759664	+	SLC35E3	chr12	69152937	+
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-intron	ENST00000462705	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-intron	ENST00000393785	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-intron	ENST00000481632	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-intron	ENST00000471418	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-intron	ENST00000357258	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-intron	ENST00000464560	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
5UTR-intron	ENST00000488663	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
intron-intron	ENST00000474710	ENST00000498645		TCGA	RV	LUAD	TCGA-MP-A4TF-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115805403	-
Frame-shit	ENST00000589717	ENST00000358716		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
Frame-shit	ENST00000589717	ENST00000382422		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
Frame-shit	ENST00000589717	ENST00000360310		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
5CDS-intron	ENST00000589717	ENST00000553853		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
5UTR-3CDS	ENST00000355650	ENST00000358716		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
5UTR-3CDS	ENST00000355650	ENST00000382422		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
5UTR-3CDS	ENST00000355650	ENST00000360310		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
5UTR-intron	ENST00000355650	ENST00000553853		TCGA	RV	LUAD	TCGA-64-1679-01A	ZNF253	chr19	19976808	+	BAZ1A	chr14	35280242	-
In-frame	ENST00000413658	ENST00000338056		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000413658	ENST00000493037		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000413658	ENST00000394654		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000413658	ENST00000496000		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
Frame-shit	ENST00000424697	ENST00000338056		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000424697	ENST00000493037		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000424697	ENST00000394654		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000424697	ENST00000496000		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
Frame-shit	ENST00000303915	ENST00000338056		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000303915	ENST00000493037		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000303915	ENST00000394654		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000303915	ENST00000496000		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
In-frame	ENST00000299667	ENST00000338056		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000299667	ENST00000493037		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000299667	ENST00000394654		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000299667	ENST00000496000		TCGA	RV	LUAD	TCGA-50-5066-01A	ZNF3	chr7	99672758	-	RUNDC3B	chr7	87323224	+
5CDS-intron	ENST00000509528	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000509528	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000509528	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000509528	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000457781	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000457781	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000457781	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000457781	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505242	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505242	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505242	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505242	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000423823	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000423823	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000423823	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000423823	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000507959	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000507959	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000507959	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000507959	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000446502	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000446502	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000446502	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000446502	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505365	ENST00000592864		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505365	ENST00000360228		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505365	ENST00000573710		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
5CDS-intron	ENST00000505365	ENST00000574822		TCGA	RV	LUAD	TCGA-44-2657-01A	ZNF302	chr19	35169718	+	CACNA1A	chr19	13366073	-
In-frame	ENST00000375200	ENST00000342704		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000375200	ENST00000375279		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000344201		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000397798		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000346541		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000397800		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000492345		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000359606		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000491618		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000375200	ENST00000543126		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
In-frame	ENST00000342427	ENST00000342704		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000342427	ENST00000375279		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000344201		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000397798		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000346541		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000397800		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000492345		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000359606		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000491618		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000342427	ENST00000543126		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF341	chr20	32358098	+	CBFA2T2	chr20	32232153	+
In-frame	ENST00000393927	ENST00000338257		TCGA	RV	LUAD	TCGA-55-8085-01A	ZNF414	chr19	8575735	-	MYO1F	chr19	8587713	-
5CDS-intron	ENST00000393927	ENST00000595046		TCGA	RV	LUAD	TCGA-55-8085-01A	ZNF414	chr19	8575735	-	MYO1F	chr19	8587713	-
intron-3CDS	ENST00000255616	ENST00000338257		TCGA	RV	LUAD	TCGA-55-8085-01A	ZNF414	chr19	8575735	-	MYO1F	chr19	8587713	-
intron-intron	ENST00000255616	ENST00000595046		TCGA	RV	LUAD	TCGA-55-8085-01A	ZNF414	chr19	8575735	-	MYO1F	chr19	8587713	-
5UTR-3CDS	ENST00000316286	ENST00000254770		TCGA	RV	LUAD	TCGA-97-A4M1-01A	ZNF786	chr7	148787715	-	LANCL2	chr7	55466116	+
5UTR-3UTR	ENST00000316286	ENST00000486376		TCGA	RV	LUAD	TCGA-97-A4M1-01A	ZNF786	chr7	148787715	-	LANCL2	chr7	55466116	+
Frame-shit	ENST00000491431	ENST00000254770		TCGA	RV	LUAD	TCGA-97-A4M1-01A	ZNF786	chr7	148787715	-	LANCL2	chr7	55466116	+
5CDS-3UTR	ENST00000491431	ENST00000486376		TCGA	RV	LUAD	TCGA-97-A4M1-01A	ZNF786	chr7	148787715	-	LANCL2	chr7	55466116	+
5UTR-3CDS	ENST00000451334	ENST00000254770		TCGA	RV	LUAD	TCGA-97-A4M1-01A	ZNF786	chr7	148787715	-	LANCL2	chr7	55466116	+
5UTR-3UTR	ENST00000451334	ENST00000486376		TCGA	RV	LUAD	TCGA-97-A4M1-01A	ZNF786	chr7	148787715	-	LANCL2	chr7	55466116	+
Frame-shit	ENST00000302538	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000302538	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000302538	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
5CDS-5UTR	ENST00000302538	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
In-frame	ENST00000544583	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
In-frame	ENST00000544583	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
In-frame	ENST00000544583	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
5CDS-5UTR	ENST00000544583	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000572441	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000572441	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000572441	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-5UTR	ENST00000572441	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000574437	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000574437	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000574437	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
5CDS-5UTR	ENST00000574437	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000291107	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000291107	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
Frame-shit	ENST00000291107	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
5CDS-5UTR	ENST00000291107	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000543210	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000543210	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000543210	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-5UTR	ENST00000543210	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000536794	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000536794	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000536794	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-5UTR	ENST00000536794	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000573895	ENST00000398970		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000573895	ENST00000300574		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000573895	ENST00000574295		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-5UTR	ENST00000573895	ENST00000572145		TCGA	RV	LUAD	TCGA-44-7662-01A	ABR	chr17	994905	-	CRK	chr17	1340449	-
intron-3CDS	ENST00000293217	ENST00000307877		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000293217	ENST00000539137		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000293217	ENST00000355113		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000293217	ENST00000602720		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000293217	ENST00000542536		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000537812	ENST00000307877		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000537812	ENST00000539137		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000537812	ENST00000355113		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000537812	ENST00000602720		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000537812	ENST00000542536		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
In-frame	ENST00000301608	ENST00000307877		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
In-frame	ENST00000301608	ENST00000539137		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
5CDS-intron	ENST00000301608	ENST00000355113		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
5CDS-intron	ENST00000301608	ENST00000602720		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
5CDS-intron	ENST00000301608	ENST00000542536		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000591857	ENST00000307877		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000591857	ENST00000539137		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000591857	ENST00000355113		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000591857	ENST00000602720		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
intron-intron	ENST00000591857	ENST00000542536		TCGA	RV	LUAD	TCGA-78-7155-01A	ACOX1	chr17	73969706	-	SRP68	chr17	74066525	-
5CDS-intron	ENST00000223357	ENST00000360359		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000223357	ENST00000535627		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000223357	ENST00000470698		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000454218	ENST00000360359		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000454218	ENST00000535627		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000454218	ENST00000470698		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000450684	ENST00000360359		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000450684	ENST00000535627		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000450684	ENST00000470698		TCGA	RV	LUAD	TCGA-64-1679-01A	AEBP1	chr7	44154159	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000223357	ENST00000322776		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000223357	ENST00000532303		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000223357	ENST00000529927		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000223357	ENST00000415352		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000223357	ENST00000526169		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000454218	ENST00000322776		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000454218	ENST00000532303		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000454218	ENST00000529927		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000454218	ENST00000415352		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000454218	ENST00000526169		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000450684	ENST00000322776		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000450684	ENST00000532303		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000450684	ENST00000529927		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000450684	ENST00000415352		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000450684	ENST00000526169		TCGA	RV	LUAD	TCGA-55-6982-01A	AEBP1	chr7	44154159	+	NDUFV1	chr11	67375697	+
In-frame	ENST00000541908	ENST00000309364		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000541908	ENST00000359180		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000541908	ENST00000317589		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000541908	ENST00000355397		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000541908	ENST00000429027		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000541908	ENST00000539256		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000541908	ENST00000299275		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000541908	ENST00000538714		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000541908	ENST00000543806		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000541908	ENST00000424268		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000541908	ENST00000540972		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000541908	ENST00000510738		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000398864	ENST00000309364		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000398864	ENST00000359180		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000398864	ENST00000317589		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000398864	ENST00000355397		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000398864	ENST00000429027		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000398864	ENST00000539256		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000398864	ENST00000299275		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000398864	ENST00000538714		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000398864	ENST00000543806		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000398864	ENST00000424268		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000398864	ENST00000540972		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000398864	ENST00000510738		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000266508	ENST00000309364		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000266508	ENST00000359180		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000266508	ENST00000317589		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000266508	ENST00000355397		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000266508	ENST00000429027		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000266508	ENST00000539256		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000266508	ENST00000299275		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000266508	ENST00000538714		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000266508	ENST00000543806		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000266508	ENST00000424268		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000266508	ENST00000540972		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000266508	ENST00000510738		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000360995	ENST00000309364		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000360995	ENST00000359180		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000360995	ENST00000317589		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000360995	ENST00000355397		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
In-frame	ENST00000360995	ENST00000429027		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000360995	ENST00000539256		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000360995	ENST00000299275		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000360995	ENST00000538714		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000360995	ENST00000543806		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000360995	ENST00000424268		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000360995	ENST00000540972		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-intron	ENST00000360995	ENST00000510738		TCGA	RV	LUAD	TCGA-55-A48Y-01A	AEBP2	chr12	19626289	+	PLEKHA5	chr12	19410367	+
5CDS-5UTR	ENST00000395146	ENST00000427191		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000436978		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000502971		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000411767		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000316707		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000511467		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000427191		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000436978		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000502971		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000411767		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000316707		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000511467		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000427191		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000436978		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000502971		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000411767		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000316707		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000511467		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000427191		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000436978		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000502971		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000411767		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000316707		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000511467		TCGA	RV	LUAD	TCGA-05-4249-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5UTR-3CDS	ENST00000247087	ENST00000306107		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3CDS	ENST00000247087	ENST00000472644		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3UTR	ENST00000247087	ENST00000481337		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-5UTR	ENST00000247087	ENST00000486979		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-intron	ENST00000247087	ENST00000389927		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3CDS	ENST00000374011	ENST00000306107		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3CDS	ENST00000374011	ENST00000472644		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3UTR	ENST00000374011	ENST00000481337		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-5UTR	ENST00000374011	ENST00000486979		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-intron	ENST00000374011	ENST00000389927		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3CDS	ENST00000480033	ENST00000306107		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3CDS	ENST00000480033	ENST00000472644		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-3UTR	ENST00000480033	ENST00000481337		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-5UTR	ENST00000480033	ENST00000486979		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5UTR-intron	ENST00000480033	ENST00000389927		TCGA	RV	LUAD	TCGA-78-7153-01A	AHDC1	chr1	27929908	-	ALCAM	chr3	105238911	+
5CDS-5UTR	ENST00000298834	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000426438	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000314845	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000533727	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000534300	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000458649	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
5CDS-5UTR	ENST00000528950	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
intron-5UTR	ENST00000529963	ENST00000311956		TCGA	RV	LUAD	TCGA-49-4488-01A	AMBRA1	chr11	46563495	-	ARHGAP1	chr11	46717706	-
Frame-shit	ENST00000370944	ENST00000361764		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
Frame-shit	ENST00000370944	ENST00000359875		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000370944	ENST00000486110		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000370944	ENST00000370940		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000370944	ENST00000531950		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000370944	ENST00000432224		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
Frame-shit	ENST00000262346	ENST00000361764		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
Frame-shit	ENST00000262346	ENST00000359875		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000262346	ENST00000486110		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000262346	ENST00000370940		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000262346	ENST00000531950		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
5CDS-intron	ENST00000262346	ENST00000432224		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
intron-3CDS	ENST00000464236	ENST00000361764		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
intron-3CDS	ENST00000464236	ENST00000359875		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
intron-intron	ENST00000464236	ENST00000486110		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
intron-intron	ENST00000464236	ENST00000370940		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
intron-intron	ENST00000464236	ENST00000531950		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
intron-intron	ENST00000464236	ENST00000432224		TCGA	RV	LUAD	TCGA-86-8075-01A	ANKRD13C	chr1	70801741	-	HHLA3	chr1	70832127	+
Frame-shit	ENST00000256682	ENST00000315585		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000256682	ENST00000266880		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000256682	ENST00000443047		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000256682	ENST00000450056		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-intron	ENST00000256682	ENST00000537522		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-5UTR	ENST00000256682	ENST00000541837		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-5UTR	ENST00000256682	ENST00000432561		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-intron	ENST00000256682	ENST00000541341		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000447318	ENST00000315585		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000447318	ENST00000266880		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000447318	ENST00000443047		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000447318	ENST00000450056		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-intron	ENST00000447318	ENST00000537522		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-5UTR	ENST00000447318	ENST00000541837		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-5UTR	ENST00000447318	ENST00000432561		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-intron	ENST00000447318	ENST00000541341		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000541959	ENST00000315585		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000541959	ENST00000266880		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000541959	ENST00000443047		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000541959	ENST00000450056		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-intron	ENST00000541959	ENST00000537522		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-5UTR	ENST00000541959	ENST00000541837		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-5UTR	ENST00000541959	ENST00000432561		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
5CDS-intron	ENST00000541959	ENST00000541341		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-3CDS	ENST00000541967	ENST00000315585		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-3CDS	ENST00000541967	ENST00000266880		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-3CDS	ENST00000541967	ENST00000443047		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-3CDS	ENST00000541967	ENST00000450056		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-intron	ENST00000541967	ENST00000537522		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-5UTR	ENST00000541967	ENST00000541837		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-5UTR	ENST00000541967	ENST00000432561		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
intron-intron	ENST00000541967	ENST00000541341		TCGA	RV	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133454240	-
Frame-shit	ENST00000434513	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000434513	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000434513	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000361221	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000361221	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000361221	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000452522	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000452522	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000452522	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375415	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375415	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000375415	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
intron-3CDS	ENST00000375420	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
intron-3CDS	ENST00000375420	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
intron-intron	ENST00000375420	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
3UTR-3CDS	ENST00000469726	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
3UTR-3CDS	ENST00000469726	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
3UTR-intron	ENST00000469726	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375408	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000375408	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000375408	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000167825	ENST00000375453		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
Frame-shit	ENST00000167825	ENST00000375448		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
5CDS-intron	ENST00000167825	ENST00000487048		TCGA	RV	LUAD	TCGA-91-8499-01A	ARHGEF10L	chr1	17991090	+	PADI4	chr1	17657464	+
In-frame	ENST00000397843	ENST00000527185		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000528682		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000524871		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000418526		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000279463		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5CDS-intron	ENST00000397843	ENST00000524560		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
intron-3CDS	ENST00000356641	ENST00000527185		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
intron-3CDS	ENST00000356641	ENST00000528682		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
intron-3CDS	ENST00000356641	ENST00000524871		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
intron-3CDS	ENST00000356641	ENST00000418526		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
intron-3CDS	ENST00000356641	ENST00000279463		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
intron-intron	ENST00000356641	ENST00000524560		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000527185		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000528682		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000524871		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000418526		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000279463		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
5UTR-intron	ENST00000532993	ENST00000524560		TCGA	RV	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120280159	+	CNTN5	chr11	99786786	+
In-frame	ENST00000311637	ENST00000217246		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
In-frame	ENST00000311637	ENST00000310348		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000311637	ENST00000464883		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000311637	ENST00000402914		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000311637	ENST00000378058		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000311637	ENST00000407045		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
In-frame	ENST00000338821	ENST00000217246		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
In-frame	ENST00000338821	ENST00000310348		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000338821	ENST00000464883		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000338821	ENST00000402914		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000338821	ENST00000378058		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000338821	ENST00000407045		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
In-frame	ENST00000402822	ENST00000217246		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
In-frame	ENST00000402822	ENST00000310348		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000402822	ENST00000464883		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000402822	ENST00000402914		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000402822	ENST00000378058		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000402822	ENST00000407045		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000477492	ENST00000217246		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000477492	ENST00000310348		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000477492	ENST00000464883		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000477492	ENST00000402914		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000477492	ENST00000378058		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000477492	ENST00000407045		TCGA	RV	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50255882	-	MACROD2	chr20	15843390	+
Frame-shit	ENST00000370693	ENST00000244061		TCGA	RV	LUAD	TCGA-49-4487-01A	BAG2	chr6	57037608	+	RNF114	chr20	48565785	+
intron-3CDS	ENST00000545080	ENST00000244061		TCGA	RV	LUAD	TCGA-49-4487-01A	BAG2	chr6	57037608	+	RNF114	chr20	48565785	+
In-frame	ENST00000373886	ENST00000368629		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
In-frame	ENST00000373886	ENST00000338492		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
5CDS-intron	ENST00000373886	ENST00000493882		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
5CDS-intron	ENST00000373886	ENST00000368627		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-3CDS	ENST00000263103	ENST00000368629		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-3CDS	ENST00000263103	ENST00000338492		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-intron	ENST00000263103	ENST00000493882		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-intron	ENST00000263103	ENST00000368627		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-3CDS	ENST00000476684	ENST00000368629		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-3CDS	ENST00000476684	ENST00000338492		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-intron	ENST00000476684	ENST00000493882		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
intron-intron	ENST00000476684	ENST00000368627		TCGA	RV	LUAD	TCGA-97-7553-01A	BICC1	chr10	60461903	+	DPYSL4	chr10	134013860	+
Frame-shit	ENST00000548411	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000548411	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
5CDS-intron	ENST00000548411	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000281474	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000281474	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
5CDS-intron	ENST00000281474	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000551848	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000551848	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
5CDS-intron	ENST00000551848	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000550207	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000550207	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
5CDS-intron	ENST00000550207	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000551086	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000551086	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
5CDS-intron	ENST00000551086	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92252400	-
Frame-shit	ENST00000421745	ENST00000238831		TCGA	RV	LUAD	TCGA-67-3771-01A	BIRC6	chr2	32664754	+	YIPF4	chr2	32515552	+
intron-3CDS	ENST00000593699	ENST00000211998		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3CDS	ENST00000593699	ENST00000372755		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3UTR	ENST00000593699	ENST00000478896		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3UTR	ENST00000593699	ENST00000417648		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3CDS	ENST00000372499	ENST00000211998		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3CDS	ENST00000372499	ENST00000372755		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3UTR	ENST00000372499	ENST00000478896		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3UTR	ENST00000372499	ENST00000417648		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3CDS	ENST00000496424	ENST00000211998		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3CDS	ENST00000496424	ENST00000372755		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3UTR	ENST00000496424	ENST00000478896		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
intron-3UTR	ENST00000496424	ENST00000417648		TCGA	RV	LUAD	TCGA-44-3396-01A	C10orf11	chr10	77198252	+	VCL	chr10	75802841	+
5CDS-3UTR	ENST00000263102	ENST00000280772		TCGA	RV	LUAD	TCGA-64-5815-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000373827		TCGA	RV	LUAD	TCGA-64-5815-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000355288		TCGA	RV	LUAD	TCGA-64-5815-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000503366		TCGA	RV	LUAD	TCGA-64-5815-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	LUAD	TCGA-64-5815-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	LUAD	TCGA-64-5815-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
intron-3CDS	ENST00000529689	ENST00000294053		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529689	ENST00000538039		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529689	ENST00000437826		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529689	ENST00000340729		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529689	ENST00000543042		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529689	ENST00000445069		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529689	ENST00000538021		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529689	ENST00000542555		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000294053		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000538039		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000437826		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000340729		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000543042		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000455220	ENST00000445069		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000455220	ENST00000538021		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000455220	ENST00000542555		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000294053		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000538039		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000437826		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000340729		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000543042		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525504	ENST00000445069		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525504	ENST00000538021		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525504	ENST00000542555		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000294053		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000538039		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000437826		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000340729		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000543042		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525503	ENST00000445069		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525503	ENST00000538021		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525503	ENST00000542555		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-3CDS	ENST00000529611	ENST00000294053		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-3CDS	ENST00000529611	ENST00000538039		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-3CDS	ENST00000529611	ENST00000437826		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-3CDS	ENST00000529611	ENST00000340729		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-3CDS	ENST00000529611	ENST00000543042		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-intron	ENST00000529611	ENST00000445069		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-intron	ENST00000529611	ENST00000538021		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
5UTR-intron	ENST00000529611	ENST00000542555		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529073	ENST00000294053		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529073	ENST00000538039		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529073	ENST00000437826		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529073	ENST00000340729		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529073	ENST00000543042		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529073	ENST00000445069		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529073	ENST00000538021		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529073	ENST00000542555		TCGA	RV	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996170	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000539107	ENST00000370501		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
intron-intron	ENST00000539107	ENST00000482259		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
In-frame	ENST00000545336	ENST00000370501		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000545336	ENST00000482259		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000381256	ENST00000370501		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
intron-intron	ENST00000381256	ENST00000482259		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
In-frame	ENST00000381259	ENST00000370501		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000381259	ENST00000482259		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
3UTR-3CDS	ENST00000540401	ENST00000370501		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
3UTR-intron	ENST00000540401	ENST00000482259		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
In-frame	ENST00000306172	ENST00000370501		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000306172	ENST00000482259		TCGA	RV	LUAD	TCGA-05-4415-01A	CCDC91	chr12	28544344	+	NTSR1	chr20	61386037	+
In-frame	ENST00000361246	ENST00000399206		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	CDC42BPB	chr14	103523336	-	C14orf182	chr14	50459591	-
5CDS-5UTR	ENST00000361246	ENST00000529902		TCGA	RV	LUAD	TCGA-MP-A4T6-01A	CDC42BPB	chr14	103523336	-	C14orf182	chr14	50459591	-
Frame-shit	ENST00000373233	ENST00000376542		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
Frame-shit	ENST00000373233	ENST00000339157		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
5CDS-intron	ENST00000373233	ENST00000481556		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
Frame-shit	ENST00000309279	ENST00000376542		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
Frame-shit	ENST00000309279	ENST00000339157		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
5CDS-intron	ENST00000309279	ENST00000481556		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
In-frame	ENST00000373222	ENST00000376542		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
In-frame	ENST00000373222	ENST00000339157		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
5CDS-intron	ENST00000373222	ENST00000481556		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
intron-3CDS	ENST00000480022	ENST00000376542		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
intron-3CDS	ENST00000480022	ENST00000339157		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
intron-intron	ENST00000480022	ENST00000481556		TCGA	RV	LUAD	TCGA-86-7954-01A	CHD6	chr20	40141485	-	ABHD12	chr20	25304066	-
5CDS-intron	ENST00000373233	ENST00000541502		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
5CDS-intron	ENST00000373233	ENST00000409404		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
5CDS-intron	ENST00000373233	ENST00000298047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
5CDS-intron	ENST00000373233	ENST00000525166		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
5CDS-intron	ENST00000373233	ENST00000533797		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
5CDS-intron	ENST00000373233	ENST00000489716		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000309279	ENST00000541502		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000309279	ENST00000409404		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000309279	ENST00000298047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000309279	ENST00000525166		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000309279	ENST00000533797		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000309279	ENST00000489716		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000373222	ENST00000541502		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000373222	ENST00000409404		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000373222	ENST00000298047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000373222	ENST00000525166		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000373222	ENST00000533797		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000373222	ENST00000489716		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000480022	ENST00000541502		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000480022	ENST00000409404		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000480022	ENST00000298047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000480022	ENST00000525166		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000480022	ENST00000533797		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
intron-intron	ENST00000480022	ENST00000489716		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHD6	chr20	40085904	-	FAT3	chr11	92613897	+
In-frame	ENST00000265689	ENST00000336898		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000376282		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000529095		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000526177		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000533784		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000529721		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000533805		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000265689	ENST00000443276		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-3CDS	ENST00000533728	ENST00000336898		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000376282		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000529095		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000526177		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000533784		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000529721		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000533805		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
intron-intron	ENST00000533728	ENST00000443276		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
In-frame	ENST00000356135	ENST00000336898		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000376282		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000529095		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000526177		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000533784		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000529721		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000533805		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000356135	ENST00000443276		TCGA	RV	LUAD	TCGA-05-5425-01A	CHKA	chr11	67842184	-	GDPD5	chr11	75173934	-
5UTR-intron	ENST00000352393	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000352393	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000317677	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000397445	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5UTR-intron	ENST00000317619	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397443	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397446	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
intron-intron	ENST00000397442	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000378707		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000359836		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000541735		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000343523		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000378677		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000357033		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000474231		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000378723		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000378702		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000361471		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000378680		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000288447		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000475146	ENST00000445312		TCGA	RV	LUAD	TCGA-75-5146-01A	CPNE1	chr20	34246852	-	DMD	chrX	32408298	-
5CDS-intron	ENST00000331366	ENST00000547702		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000331366	ENST00000551295		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000331366	ENST00000547849		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000331366	ENST00000347616		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000331366	ENST00000348761		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-3UTR	ENST00000331366	ENST00000550305		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000331366	ENST00000360099		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000538596	ENST00000547702		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000538596	ENST00000551295		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000538596	ENST00000547849		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000538596	ENST00000347616		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000538596	ENST00000348761		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-3UTR	ENST00000538596	ENST00000550305		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000538596	ENST00000360099		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000546603	ENST00000547702		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000546603	ENST00000551295		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000546603	ENST00000547849		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000546603	ENST00000347616		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000546603	ENST00000348761		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-3UTR	ENST00000546603	ENST00000550305		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
intron-intron	ENST00000546603	ENST00000360099		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000360449	ENST00000547702		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000360449	ENST00000551295		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000360449	ENST00000547849		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000360449	ENST00000347616		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000360449	ENST00000348761		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-3UTR	ENST00000360449	ENST00000550305		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-intron	ENST00000360449	ENST00000360099		TCGA	RV	LUAD	TCGA-80-5611-01A	CPNE8	chr12	39266806	-	CNTN1	chr12	41408030	+
5CDS-3UTR	ENST00000405015	ENST00000472729		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405015	ENST00000311832		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405015	ENST00000538736		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000472729		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000311832		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000538736		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000472729		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000311832		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000538736		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000472729		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000311832		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000538736		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000472729		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000311832		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000538736		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000472729		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000311832		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000538736		TCGA	RV	LUAD	TCGA-44-7660-01A	EHBP1	chr2	63182795	+	COMMD1	chr2	62227836	+
intron-3CDS	ENST00000264211	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000264211	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000264211	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000264211	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000400422	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000400422	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000400422	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3UTR	ENST00000400422	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000602326	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000602326	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000602326	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3UTR	ENST00000602326	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374935	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374935	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374935	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000374935	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374937	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374937	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374937	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000374937	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000536266	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000536266	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000536266	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000536266	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374933	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374933	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000374933	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000374933	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000544689	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000544689	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000544689	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000544689	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000356916	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000356916	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000356916	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3UTR	ENST00000356916	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000374927	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000374927	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3CDS	ENST00000374927	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
5UTR-3UTR	ENST00000374927	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000537738	ENST00000474844		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000537738	ENST00000536062		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3CDS	ENST00000537738	ENST00000537428		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
intron-3UTR	ENST00000537738	ENST00000498008		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF4G3	chr1	21415631	-	NSUN4	chr1	46818540	+
In-frame	ENST00000273854	ENST00000417478		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000273854	ENST00000381006		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000273854	ENST00000226328		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000273854	ENST00000536664		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000273854	ENST00000502653		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
5CDS-intron	ENST00000273854	ENST00000512331		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
intron-3CDS	ENST00000432638	ENST00000417478		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
intron-3CDS	ENST00000432638	ENST00000381006		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
intron-3CDS	ENST00000432638	ENST00000226328		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
intron-3CDS	ENST00000432638	ENST00000536664		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
intron-3CDS	ENST00000432638	ENST00000502653		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
intron-intron	ENST00000432638	ENST00000512331		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000354839	ENST00000417478		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000354839	ENST00000381006		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000354839	ENST00000226328		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000354839	ENST00000536664		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000354839	ENST00000502653		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
5CDS-intron	ENST00000354839	ENST00000512331		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000511294	ENST00000417478		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000511294	ENST00000381006		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000511294	ENST00000226328		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000511294	ENST00000536664		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000511294	ENST00000502653		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
5CDS-intron	ENST00000511294	ENST00000512331		TCGA	RV	LUAD	TCGA-91-6848-01A	EPHA5	chr4	66356095	-	RUFY3	chr4	71628236	+
In-frame	ENST00000543086	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000543086	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000543086	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000543086	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000543086	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000543086	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000543086	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000543086	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000546231	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000546231	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000546231	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000546231	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000546231	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000546231	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000546231	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000546231	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000397203	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000397203	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000397203	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000397203	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000397203	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000397203	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000397203	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000397203	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000360905	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000360905	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000360905	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000360905	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000360905	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000360905	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000360905	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000360905	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000589028	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000589028	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000589028	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000589028	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000589028	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000589028	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000589028	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000589028	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000355446	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000355446	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
In-frame	ENST00000355446	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000355446	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000355446	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000355446	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000355446	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000355446	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-3CDS	ENST00000536573	ENST00000535572		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-3CDS	ENST00000536573	ENST00000537687		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-3CDS	ENST00000536573	ENST00000315939		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-intron	ENST00000536573	ENST00000447667		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-intron	ENST00000536573	ENST00000530271		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-intron	ENST00000536573	ENST00000540360		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-intron	ENST00000536573	ENST00000340908		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
intron-intron	ENST00000536573	ENST00000574564		TCGA	RV	LUAD	TCGA-78-8660-01A	ERC1	chr12	1137738	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000409018	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5CDS-5UTR	ENST00000409018	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5CDS-5UTR	ENST00000409018	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
3UTR-intron	ENST00000492815	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
3UTR-5UTR	ENST00000492815	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
3UTR-5UTR	ENST00000492815	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-intron	ENST00000409014	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000409014	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000409014	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
intron-intron	ENST00000409675	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
intron-5UTR	ENST00000409675	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
intron-5UTR	ENST00000409675	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-intron	ENST00000409949	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000409949	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000409949	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-intron	ENST00000409242	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000409242	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000409242	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5CDS-intron	ENST00000312994	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5CDS-5UTR	ENST00000312994	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5CDS-5UTR	ENST00000312994	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-intron	ENST00000449989	ENST00000370069		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000449989	ENST00000266068		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
5UTR-5UTR	ENST00000449989	ENST00000370077		TCGA	RV	LUAD	TCGA-55-8206-01A	EXD2	chr14	69676520	+	GMEB2	chr20	62250807	-
Frame-shit	ENST00000378204	ENST00000443356		TCGA	RV	LUAD	TCGA-05-4422-01A	EXT1	chr8	118830674	-	OC90	chr8	133045411	-
Frame-shit	ENST00000378204	ENST00000603859		TCGA	RV	LUAD	TCGA-05-4422-01A	EXT1	chr8	118830674	-	OC90	chr8	133045411	-
Frame-shit	ENST00000378204	ENST00000254627		TCGA	RV	LUAD	TCGA-05-4422-01A	EXT1	chr8	118830674	-	OC90	chr8	133045411	-
Frame-shit	ENST00000378204	ENST00000262283		TCGA	RV	LUAD	TCGA-05-4422-01A	EXT1	chr8	118830674	-	OC90	chr8	133045411	-
intron-5UTR	ENST00000478654	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000478654	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000478654	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000478654	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000478654	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000478654	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000460911	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000460911	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000460911	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000460911	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000460911	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000460911	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000350995	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000350995	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000350995	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000350995	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000350995	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000350995	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000320356	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000320356	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000320356	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000320356	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000320356	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000320356	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000541220	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000541220	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000541220	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000541220	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000541220	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000541220	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000476773	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000476773	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000476773	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000476773	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000476773	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000476773	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000483967	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000483967	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000483967	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000483967	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000483967	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000483967	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000536783	ENST00000492607		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000536783	ENST00000326442		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000536783	ENST00000447204		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000536783	ENST00000434545		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000536783	ENST00000429904		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
5UTR-5UTR	ENST00000536783	ENST00000450753		TCGA	RV	LUAD	TCGA-49-AAR9-01A	EZH2	chr7	148581256	-	TMEM176B	chr7	150493662	-
In-frame	ENST00000264899	ENST00000296043		TCGA	RV	LUAD	TCGA-50-6592-01A	FRAS1	chr4	78987170	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000264899	ENST00000473602		TCGA	RV	LUAD	TCGA-50-6592-01A	FRAS1	chr4	78987170	+	SHROOM3	chr4	77476762	+
In-frame	ENST00000325942	ENST00000296043		TCGA	RV	LUAD	TCGA-50-6592-01A	FRAS1	chr4	78987170	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000325942	ENST00000473602		TCGA	RV	LUAD	TCGA-50-6592-01A	FRAS1	chr4	78987170	+	SHROOM3	chr4	77476762	+
In-frame	ENST00000264895	ENST00000296043		TCGA	RV	LUAD	TCGA-50-6592-01A	FRAS1	chr4	78987170	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000264895	ENST00000473602		TCGA	RV	LUAD	TCGA-50-6592-01A	FRAS1	chr4	78987170	+	SHROOM3	chr4	77476762	+
5CDS-5UTR	ENST00000368682	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368682	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368682	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368682	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000368682	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368682	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368682	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368682	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000354650	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000354650	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000229471	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229471	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000368667	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368667	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000368678	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000368678	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000229470	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000229470	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000356013	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000356013	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-intron	ENST00000538466	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5CDS-5UTR	ENST00000538466	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000230538		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000522006		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000389463		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000424408		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-intron	ENST00000476769	ENST00000524032		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000431543		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000368638		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
intron-5UTR	ENST00000476769	ENST00000453937		TCGA	RV	LUAD	TCGA-MP-A4SY-01A	FYN	chr6	112015578	-	LAMA4	chr6	112575493	-
5UTR-5UTR	ENST00000370982	ENST00000370981		TCGA	RV	LUAD	TCGA-69-7760-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000370982	ENST00000395201		TCGA	RV	LUAD	TCGA-69-7760-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000494936	ENST00000370981		TCGA	RV	LUAD	TCGA-69-7760-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000494936	ENST00000395201		TCGA	RV	LUAD	TCGA-69-7760-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
Frame-shit	ENST00000163416	ENST00000216487		TCGA	RV	LUAD	TCGA-78-7220-01A	GOLGA5	chr14	93299692	+	RIN3	chr14	93107583	+
5CDS-3UTR	ENST00000163416	ENST00000418924		TCGA	RV	LUAD	TCGA-78-7220-01A	GOLGA5	chr14	93299692	+	RIN3	chr14	93107583	+
5CDS-intron	ENST00000163416	ENST00000557762		TCGA	RV	LUAD	TCGA-78-7220-01A	GOLGA5	chr14	93299692	+	RIN3	chr14	93107583	+
Frame-shit	ENST00000355976	ENST00000216487		TCGA	RV	LUAD	TCGA-78-7220-01A	GOLGA5	chr14	93299692	+	RIN3	chr14	93107583	+
5CDS-3UTR	ENST00000355976	ENST00000418924		TCGA	RV	LUAD	TCGA-78-7220-01A	GOLGA5	chr14	93299692	+	RIN3	chr14	93107583	+
5CDS-intron	ENST00000355976	ENST00000557762		TCGA	RV	LUAD	TCGA-78-7220-01A	GOLGA5	chr14	93299692	+	RIN3	chr14	93107583	+
5CDS-5UTR	ENST00000424459	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000424459	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5UTR-5UTR	ENST00000514387	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000506184	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000454432	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000511209	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000264779	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000525528		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000439476		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000533131		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000395986		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000418212		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000533246		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000356660		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000530861		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000438929		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000420794		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000395983		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000395980		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000584049		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000532997		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000395981		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000395978		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000525950		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-5UTR	ENST00000538707	ENST00000314915		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	GPBP1	chr5	56531859	+	BDNF	chr11	27680132	-
5CDS-intron	ENST00000373823	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373823	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373823	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373808	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373808	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373808	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000436847	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000436847	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000436847	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000449733	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000449733	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000449733	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000412819	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000412819	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000412819	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000394353	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000394353	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000394353	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000341272	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000341272	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000341272	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000545652	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000545652	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000545652	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373818	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373818	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000373818	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000485767	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000485767	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000485767	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000373807	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000373807	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000373807	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000373806	ENST00000354817		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000373806	ENST00000527202		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
intron-intron	ENST00000373806	ENST00000532502		TCGA	RV	LUAD	TCGA-50-7109-01A	GSN	chr9	124095120	+	FAR1	chr11	13744912	+
In-frame	ENST00000525975	ENST00000241052		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000525975	ENST00000534710		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
In-frame	ENST00000379016	ENST00000241052		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000379016	ENST00000534710		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
In-frame	ENST00000303296	ENST00000241052		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000303296	ENST00000534710		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
In-frame	ENST00000456517	ENST00000241052		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000456517	ENST00000534710		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
intron-3CDS	ENST00000534262	ENST00000241052		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
intron-intron	ENST00000534262	ENST00000534710		TCGA	RV	LUAD	TCGA-55-8510-01A	HIPK3	chr11	33373811	+	CAT	chr11	34470739	+
intron-3CDS	ENST00000403668	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000403668	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000444075	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000444075	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000287701	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000287701	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000558662	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000558662	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000523613	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000523613	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
5UTR-3CDS	ENST00000397358	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
5UTR-3CDS	ENST00000397358	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000519047	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000519047	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000355231	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000355231	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000524238	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000524238	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000517386	ENST00000337221		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000517386	ENST00000301904		TCGA	RV	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28748536	+	SCARA3	chr8	27507219	+
Frame-shit	ENST00000369209	ENST00000392903		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPA12A	chr10	118501941	-	KIAA1598	chr10	118646077	-
Frame-shit	ENST00000369209	ENST00000260777		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPA12A	chr10	118501941	-	KIAA1598	chr10	118646077	-
Frame-shit	ENST00000369209	ENST00000355371		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPA12A	chr10	118501941	-	KIAA1598	chr10	118646077	-
5CDS-intron	ENST00000369209	ENST00000392901		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPA12A	chr10	118501941	-	KIAA1598	chr10	118646077	-
5CDS-5UTR	ENST00000369209	ENST00000497044		TCGA	RV	LUAD	TCGA-05-4430-01A	HSPA12A	chr10	118501941	-	KIAA1598	chr10	118646077	-
intron-5UTR	ENST00000486901	ENST00000342745		TCGA	RV	LUAD	TCGA-69-8254-01A	HSPG2	chr1	22157475	-	KIAA0247	chr14	70125230	+
intron-intron	ENST00000486901	ENST00000553497		TCGA	RV	LUAD	TCGA-69-8254-01A	HSPG2	chr1	22157475	-	KIAA0247	chr14	70125230	+
5CDS-5UTR	ENST00000374695	ENST00000342745		TCGA	RV	LUAD	TCGA-69-8254-01A	HSPG2	chr1	22157475	-	KIAA0247	chr14	70125230	+
5CDS-intron	ENST00000374695	ENST00000553497		TCGA	RV	LUAD	TCGA-69-8254-01A	HSPG2	chr1	22157475	-	KIAA0247	chr14	70125230	+
intron-5UTR	ENST00000430507	ENST00000342745		TCGA	RV	LUAD	TCGA-69-8254-01A	HSPG2	chr1	22157475	-	KIAA0247	chr14	70125230	+
intron-intron	ENST00000430507	ENST00000553497		TCGA	RV	LUAD	TCGA-69-8254-01A	HSPG2	chr1	22157475	-	KIAA0247	chr14	70125230	+
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	LUAD	TCGA-L9-A443-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	LUAD	TCGA-L9-A443-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000373935	ENST00000395795		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000373935	ENST00000374429		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000373935	ENST00000395793		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000373935	ENST00000374426		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000373935	ENST00000343575		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000373935	ENST00000395794		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000373935	ENST00000496375		TCGA	RV	LUAD	TCGA-38-4632-01A	IPMK	chr10	59986804	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000579662	ENST00000571914		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000579662	ENST00000328585		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000579662	ENST00000572675		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000339591	ENST00000571914		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000339591	ENST00000328585		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000339591	ENST00000572675		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000200181	ENST00000571914		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000200181	ENST00000328585		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000200181	ENST00000572675		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000450894	ENST00000571914		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000450894	ENST00000328585		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000450894	ENST00000572675		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000449880	ENST00000571914		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000449880	ENST00000328585		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
5CDS-intron	ENST00000449880	ENST00000572675		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
intron-intron	ENST00000584558	ENST00000571914		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
intron-intron	ENST00000584558	ENST00000328585		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
intron-intron	ENST00000584558	ENST00000572675		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ITGB4	chr17	73747192	+	TSPAN10	chr17	79612018	+
3UTR-intron	ENST00000378565	ENST00000371917		TCGA	RV	LUAD	TCGA-44-7670-01A	ITM2B	chr13	48835524	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000378565	ENST00000493140		TCGA	RV	LUAD	TCGA-44-7670-01A	ITM2B	chr13	48835524	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000378549	ENST00000371917		TCGA	RV	LUAD	TCGA-44-7670-01A	ITM2B	chr13	48835524	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000378549	ENST00000493140		TCGA	RV	LUAD	TCGA-44-7670-01A	ITM2B	chr13	48835524	+	ARFGEF2	chr20	47615777	+
5CDS-5UTR	ENST00000341776	ENST00000369413		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
5CDS-5UTR	ENST00000341776	ENST00000235547		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
5CDS-5UTR	ENST00000341776	ENST00000528909		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000397311	ENST00000369413		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000397311	ENST00000235547		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000397311	ENST00000528909		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000541660	ENST00000369413		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000541660	ENST00000235547		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000541660	ENST00000528909		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000474854	ENST00000369413		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000474854	ENST00000235547		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
intron-5UTR	ENST00000474854	ENST00000528909		TCGA	RV	LUAD	TCGA-44-8117-01A	JARID2	chr6	15246815	+	HSD3B1	chr1	120050015	+
Frame-shit	ENST00000359878	ENST00000401884		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
Frame-shit	ENST00000359878	ENST00000342631		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
Frame-shit	ENST00000359878	ENST00000405547		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
Frame-shit	ENST00000359878	ENST00000310397		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5CDS-intron	ENST00000359878	ENST00000469006		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
In-frame	ENST00000409157	ENST00000401884		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
In-frame	ENST00000409157	ENST00000342631		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
In-frame	ENST00000409157	ENST00000405547		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
In-frame	ENST00000409157	ENST00000310397		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5CDS-intron	ENST00000409157	ENST00000469006		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5UTR-3CDS	ENST00000468413	ENST00000401884		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5UTR-3CDS	ENST00000468413	ENST00000342631		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5UTR-3CDS	ENST00000468413	ENST00000405547		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5UTR-3CDS	ENST00000468413	ENST00000310397		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5UTR-intron	ENST00000468413	ENST00000469006		TCGA	RV	LUAD	TCGA-75-6207-01A	KCTD18	chr2	201362476	-	SNED1	chr2	242007179	+
5UTR-3CDS	ENST00000337530	ENST00000372715		TCGA	RV	LUAD	TCGA-91-6840-01A	KIAA1958	chr9	115249398	+	WDR34	chr9	131403218	-
5UTR-intron	ENST00000337530	ENST00000483181		TCGA	RV	LUAD	TCGA-91-6840-01A	KIAA1958	chr9	115249398	+	WDR34	chr9	131403218	-
5UTR-3CDS	ENST00000374244	ENST00000372715		TCGA	RV	LUAD	TCGA-91-6840-01A	KIAA1958	chr9	115249398	+	WDR34	chr9	131403218	-
5UTR-intron	ENST00000374244	ENST00000483181		TCGA	RV	LUAD	TCGA-91-6840-01A	KIAA1958	chr9	115249398	+	WDR34	chr9	131403218	-
5UTR-3CDS	ENST00000536272	ENST00000372715		TCGA	RV	LUAD	TCGA-91-6840-01A	KIAA1958	chr9	115249398	+	WDR34	chr9	131403218	-
5UTR-intron	ENST00000536272	ENST00000483181		TCGA	RV	LUAD	TCGA-91-6840-01A	KIAA1958	chr9	115249398	+	WDR34	chr9	131403218	-
In-frame	ENST00000361961	ENST00000321196		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000361961	ENST00000548305		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000361961	ENST00000549919		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
In-frame	ENST00000395670	ENST00000321196		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000395670	ENST00000548305		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000395670	ENST00000549919		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
In-frame	ENST00000544797	ENST00000321196		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000544797	ENST00000548305		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000544797	ENST00000549919		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
In-frame	ENST00000361418	ENST00000321196		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000361418	ENST00000548305		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000361418	ENST00000549919		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
In-frame	ENST00000541463	ENST00000321196		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000541463	ENST00000548305		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
5CDS-intron	ENST00000541463	ENST00000549919		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
intron-3CDS	ENST00000547745	ENST00000321196		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
intron-intron	ENST00000547745	ENST00000548305		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
intron-intron	ENST00000547745	ENST00000549919		TCGA	RV	LUAD	TCGA-78-7150-01A	KIF21A	chr12	39836729	-	TMTC2	chr12	83424577	+
In-frame	ENST00000558518	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000558518	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000557933	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000557933	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000455727	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000455727	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000535915	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000535915	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000545707	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000545707	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000558013	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000558013	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
intron-3CDS	ENST00000560628	ENST00000592854		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
intron-3CDS	ENST00000560628	ENST00000397820		TCGA	RV	LUAD	TCGA-55-6972-01A	LDLR	chr19	11211021	+	C19orf38	chr19	10968992	+
In-frame	ENST00000524419	ENST00000343028		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
5CDS-intron	ENST00000524419	ENST00000542667		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
In-frame	ENST00000528989	ENST00000343028		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
5CDS-intron	ENST00000528989	ENST00000542667		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
In-frame	ENST00000315571	ENST00000343028		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
5CDS-intron	ENST00000315571	ENST00000542667		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
intron-3CDS	ENST00000529759	ENST00000343028		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
intron-intron	ENST00000529759	ENST00000542667		TCGA	RV	LUAD	TCGA-64-1681-01A	LDLRAD3	chr11	36120011	+	TM7SF3	chr12	27156323	-
Frame-shit	ENST00000378858	ENST00000378883		TCGA	RV	LUAD	TCGA-75-6205-01A	LRRN4	chr20	6031425	-	MCM8	chr20	5974152	+
Frame-shit	ENST00000378858	ENST00000378896		TCGA	RV	LUAD	TCGA-75-6205-01A	LRRN4	chr20	6031425	-	MCM8	chr20	5974152	+
Frame-shit	ENST00000378858	ENST00000378886		TCGA	RV	LUAD	TCGA-75-6205-01A	LRRN4	chr20	6031425	-	MCM8	chr20	5974152	+
Frame-shit	ENST00000378858	ENST00000265187		TCGA	RV	LUAD	TCGA-75-6205-01A	LRRN4	chr20	6031425	-	MCM8	chr20	5974152	+
intron-3UTR	ENST00000231751	ENST00000318789		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000231751	ENST00000475937		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000493089		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000484350		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000318779		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000491238		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000498215		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000468577		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000231751	ENST00000472382		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000426532	ENST00000318789		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000426532	ENST00000475937		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000493089		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000484350		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000318779		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000491238		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000498215		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000468577		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000426532	ENST00000472382		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000417439	ENST00000318789		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000417439	ENST00000475937		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000493089		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000484350		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000318779		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000491238		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000498215		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000468577		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000417439	ENST00000472382		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000493056	ENST00000318789		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000493056	ENST00000475937		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000493089		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000484350		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000318779		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000491238		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000498215		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000468577		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000493056	ENST00000472382		TCGA	RV	LUAD	TCGA-44-7671-01A	LTF	chr3	46477510	-	FOXP1	chr3	71007472	-
Frame-shit	ENST00000215832	ENST00000357179		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
Frame-shit	ENST00000215832	ENST00000398793		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
5CDS-intron	ENST00000215832	ENST00000413067		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
Frame-shit	ENST00000398822	ENST00000357179		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
Frame-shit	ENST00000398822	ENST00000398793		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
5CDS-intron	ENST00000398822	ENST00000413067		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
Frame-shit	ENST00000544786	ENST00000357179		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
Frame-shit	ENST00000544786	ENST00000398793		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
5CDS-intron	ENST00000544786	ENST00000413067		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
intron-3CDS	ENST00000491588	ENST00000357179		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
intron-3CDS	ENST00000491588	ENST00000398793		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
intron-intron	ENST00000491588	ENST00000413067		TCGA	RV	LUAD	TCGA-62-A46O-01A	MAPK1	chr22	22221612	-	TOP3B	chr22	22313604	-
Frame-shit	ENST00000264674	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000264674	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000264674	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000392736	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000392736	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000392736	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000464456	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000464456	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000464456	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000472280	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000472280	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000472280	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000494292	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000494292	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000494292	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000468789	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000468789	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000468789	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000460814	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000460814	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
In-frame	ENST00000460814	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000433243	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000433243	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
Frame-shit	ENST00000433243	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
intron-3CDS	ENST00000485957	ENST00000417257		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
intron-3CDS	ENST00000485957	ENST00000402883		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
intron-3CDS	ENST00000485957	ENST00000484674		TCGA	RV	LUAD	TCGA-91-7771-01A	MECOM	chr3	168810746	-	FRMD5	chr15	44180464	-
intron-5UTR	ENST00000250144	ENST00000583088		TCGA	RV	LUAD	TCGA-55-7911-01A	MMP28	chr17	34105892	-	KCNJ12	chr17	21311831	+
intron-5UTR	ENST00000250144	ENST00000331718		TCGA	RV	LUAD	TCGA-55-7911-01A	MMP28	chr17	34105892	-	KCNJ12	chr17	21311831	+
5CDS-intron	ENST00000262966	ENST00000588723		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-intron	ENST00000262966	ENST00000356958		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000262966	ENST00000292841		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000262966	ENST00000392157		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000262966	ENST00000355533		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000262966	ENST00000588354		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-intron	ENST00000359935	ENST00000588723		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-intron	ENST00000359935	ENST00000356958		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000359935	ENST00000292841		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000359935	ENST00000392157		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000359935	ENST00000355533		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000359935	ENST00000588354		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-intron	ENST00000599840	ENST00000588723		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-intron	ENST00000599840	ENST00000356958		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000599840	ENST00000292841		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000599840	ENST00000392157		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000599840	ENST00000355533		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
5CDS-5UTR	ENST00000599840	ENST00000588354		TCGA	RV	LUAD	TCGA-38-4628-01A	MPND	chr19	4345978	+	ZNF585A	chr19	37656598	-
In-frame	ENST00000370396	ENST00000535916		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000370396	ENST00000286428		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
5CDS-intron	ENST00000370396	ENST00000459836		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000542741	ENST00000535916		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000542741	ENST00000286428		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
5CDS-intron	ENST00000542741	ENST00000459836		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000543350	ENST00000535916		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000543350	ENST00000286428		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
5CDS-intron	ENST00000543350	ENST00000459836		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
3UTR-3CDS	ENST00000306167	ENST00000535916		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
3UTR-3CDS	ENST00000306167	ENST00000286428		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
3UTR-intron	ENST00000306167	ENST00000459836		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000413012	ENST00000535916		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
In-frame	ENST00000413012	ENST00000286428		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
5CDS-intron	ENST00000413012	ENST00000459836		TCGA	RV	LUAD	TCGA-55-6712-01A	MTM1	chrX	149787612	+	VBP1	chrX	154448460	+
5CDS-5UTR	ENST00000544260	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000544260	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381869	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000381861	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000262102	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
5CDS-5UTR	ENST00000519263	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000400046	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000297488	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000518713	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000381862	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8508-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17743080	-
In-frame	ENST00000513610	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
5CDS-intron	ENST00000513610	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
In-frame	ENST00000507288	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
5CDS-intron	ENST00000507288	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-3CDS	ENST00000274203	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-intron	ENST00000274203	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-3CDS	ENST00000515803	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-intron	ENST00000515803	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-3CDS	ENST00000427430	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-intron	ENST00000427430	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-3CDS	ENST00000505695	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-intron	ENST00000505695	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-3CDS	ENST00000512061	ENST00000328299		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
intron-intron	ENST00000512061	ENST00000464140		TCGA	RV	LUAD	TCGA-05-4424-01A	MYO10	chr5	16935897	-	ST6GALNAC3	chr1	76779490	+
5CDS-5UTR	ENST00000296684	ENST00000511725		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	NDUFS4	chr5	52856590	+	UBE2D2	chr5	138979957	+
5CDS-5UTR	ENST00000296684	ENST00000253815		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	NDUFS4	chr5	52856590	+	UBE2D2	chr5	138979957	+
5CDS-5UTR	ENST00000296684	ENST00000398733		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	NDUFS4	chr5	52856590	+	UBE2D2	chr5	138979957	+
5CDS-5UTR	ENST00000296684	ENST00000505548		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	NDUFS4	chr5	52856590	+	UBE2D2	chr5	138979957	+
3UTR-3UTR	ENST00000397661	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000397661	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592199	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000592199	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587760	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587760	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585575	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585575	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000360105	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000360105	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000588228	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000588228	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587260	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
3UTR-3UTR	ENST00000587260	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000358552	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000358552	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000588680	ENST00000585548		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000588680	ENST00000317060		TCGA	RV	LUAD	TCGA-38-4630-01A	NFIX	chr19	13201204	+	DAND5	chr19	13084203	+
Frame-shit	ENST00000356770	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000356770	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000356770	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000356770	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000356770	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000356770	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000356770	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000394830	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000394830	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000394830	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000394830	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000394830	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000394830	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000394830	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000296302	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000296302	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000296302	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000296302	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000296302	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000296302	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000296302	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000337303	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000337303	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000337303	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000337303	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000337303	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000337303	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000337303	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000410007	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000410007	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000410007	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000410007	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000410007	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000410007	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000410007	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409057	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409057	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409057	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409057	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409057	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409057	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000409057	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409114	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409114	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409114	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409114	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409114	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409114	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000409114	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409767	ENST00000425327		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409767	ENST00000393775		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409767	ENST00000489689		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409767	ENST00000354673		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409767	ENST00000441144		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
Frame-shit	ENST00000409767	ENST00000491903		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
5CDS-5UTR	ENST00000409767	ENST00000459718		TCGA	RV	LUAD	TCGA-99-8032-01A	PBRM1	chr3	52712516	-	IGSF11	chr3	118647563	-
intron-3CDS	ENST00000340635	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000340635	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000360047	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000360047	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
In-frame	ENST00000507116	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
In-frame	ENST00000507116	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000502484	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000502484	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000546160	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000546160	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
In-frame	ENST00000502575	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
In-frame	ENST00000502575	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000358923	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000358923	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000503258	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000503258	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000405755	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000405755	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000317118	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000317118	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000503947	ENST00000367669		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000503947	ENST00000308769		TCGA	RV	LUAD	TCGA-L9-A5IP-01A	PDE4D	chr5	59064073	-	RFWD2	chr1	175916375	-
In-frame	ENST00000438447	ENST00000356083		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PDZD2	chr5	32093130	+	COL27A1	chr9	117014873	+
5CDS-intron	ENST00000438447	ENST00000477421		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PDZD2	chr5	32093130	+	COL27A1	chr9	117014873	+
In-frame	ENST00000282493	ENST00000356083		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PDZD2	chr5	32093130	+	COL27A1	chr9	117014873	+
5CDS-intron	ENST00000282493	ENST00000477421		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PDZD2	chr5	32093130	+	COL27A1	chr9	117014873	+
intron-3CDS	ENST00000513490	ENST00000356083		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PDZD2	chr5	32093130	+	COL27A1	chr9	117014873	+
intron-intron	ENST00000513490	ENST00000477421		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PDZD2	chr5	32093130	+	COL27A1	chr9	117014873	+
Frame-shit	ENST00000374012	ENST00000396029		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000374012	ENST00000396032		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000374012	ENST00000371602		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000374012	ENST00000349014		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000439301	ENST00000396029		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000439301	ENST00000396032		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000439301	ENST00000371602		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
Frame-shit	ENST00000439301	ENST00000349014		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
3UTR-3CDS	ENST00000481202	ENST00000396029		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
3UTR-3CDS	ENST00000481202	ENST00000396032		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
3UTR-3CDS	ENST00000481202	ENST00000371602		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
3UTR-3CDS	ENST00000481202	ENST00000349014		TCGA	RV	LUAD	TCGA-91-6831-01A	PHF20	chr20	34389527	+	ADNP	chr20	49511049	-
intron-5UTR	ENST00000540628	ENST00000561482		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
intron-5UTR	ENST00000540628	ENST00000160827		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
intron-5UTR	ENST00000540628	ENST00000400750		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
intron-5UTR	ENST00000540628	ENST00000400751		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
intron-5UTR	ENST00000540628	ENST00000569382		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
intron-intron	ENST00000540628	ENST00000563263		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000360429	ENST00000561482		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000360429	ENST00000160827		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000360429	ENST00000400750		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000360429	ENST00000400751		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000360429	ENST00000569382		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-intron	ENST00000360429	ENST00000563263		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000568954	ENST00000561482		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000568954	ENST00000160827		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000568954	ENST00000400750		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000568954	ENST00000400751		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000568954	ENST00000569382		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-intron	ENST00000568954	ENST00000563263		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000393524	ENST00000561482		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000393524	ENST00000160827		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000393524	ENST00000400750		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000393524	ENST00000400751		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000393524	ENST00000569382		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-intron	ENST00000393524	ENST00000563263		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000356272	ENST00000561482		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000356272	ENST00000160827		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000356272	ENST00000400750		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000356272	ENST00000400751		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000356272	ENST00000569382		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-intron	ENST00000356272	ENST00000563263		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000567016	ENST00000561482		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000567016	ENST00000160827		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000567016	ENST00000400750		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000567016	ENST00000400751		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-5UTR	ENST00000567016	ENST00000569382		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
5CDS-intron	ENST00000567016	ENST00000563263		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PHLPP2	chr16	71710350	-	KIF22	chr16	29808214	+
Frame-shit	ENST00000263857	ENST00000165698		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000535845		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000541910		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000538924		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000540790		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000473407		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000409681	ENST00000165698		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000535845		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000541910		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000538924		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000540790		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000473407		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-3CDS	ENST00000483538	ENST00000165698		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000535845		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000541910		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000538924		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000540790		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000473407		TCGA	RV	LUAD	TCGA-44-7660-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-3CDS	ENST00000423007	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000423007	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000423007	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000423007	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000423007	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000404875	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000404875	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000404875	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000404875	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000404875	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000341012	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000341012	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000341012	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000341012	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000341012	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000372228	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000372228	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000372228	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000372228	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000372228	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000419118	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000419118	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000419118	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000419118	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000419118	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000402686	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000402686	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000402686	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000402686	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000402686	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000541219	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000541219	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000541219	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000541219	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000541219	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000354713	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000354713	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000354713	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000354713	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-intron	ENST00000354713	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
intron-3CDS	ENST00000485278	ENST00000359428		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
intron-3CDS	ENST00000485278	ENST00000411637		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
intron-3CDS	ENST00000485278	ENST00000451030		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
intron-3CDS	ENST00000485278	ENST00000483497		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
intron-intron	ENST00000485278	ENST00000465486		TCGA	RV	LUAD	TCGA-50-5941-01A	POMT1	chr9	134378460	+	NUP214	chr9	134090599	+
5UTR-3CDS	ENST00000444397	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-intron	ENST00000444397	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-3CDS	ENST00000360694	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-intron	ENST00000360694	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-3CDS	ENST00000418635	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-intron	ENST00000418635	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
Frame-shit	ENST00000448077	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5CDS-intron	ENST00000448077	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-3CDS	ENST00000337400	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-intron	ENST00000337400	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-3CDS	ENST00000311565	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
5UTR-intron	ENST00000311565	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
intron-3CDS	ENST00000540939	ENST00000246914		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
intron-intron	ENST00000540939	ENST00000587705		TCGA	RV	LUAD	TCGA-55-6978-01A	PPARD	chr6	35314927	+	WNK4	chr17	40945610	+
In-frame	ENST00000360957	ENST00000323060		TCGA	RV	LUAD	TCGA-78-8640-01A	PPP1R13L	chr19	45895138	-	OPA3	chr19	46032714	-
5CDS-intron	ENST00000360957	ENST00000263275		TCGA	RV	LUAD	TCGA-78-8640-01A	PPP1R13L	chr19	45895138	-	OPA3	chr19	46032714	-
5CDS-intron	ENST00000360957	ENST00000544371		TCGA	RV	LUAD	TCGA-78-8640-01A	PPP1R13L	chr19	45895138	-	OPA3	chr19	46032714	-
In-frame	ENST00000418234	ENST00000323060		TCGA	RV	LUAD	TCGA-78-8640-01A	PPP1R13L	chr19	45895138	-	OPA3	chr19	46032714	-
5CDS-intron	ENST00000418234	ENST00000263275		TCGA	RV	LUAD	TCGA-78-8640-01A	PPP1R13L	chr19	45895138	-	OPA3	chr19	46032714	-
5CDS-intron	ENST00000418234	ENST00000544371		TCGA	RV	LUAD	TCGA-78-8640-01A	PPP1R13L	chr19	45895138	-	OPA3	chr19	46032714	-
Frame-shit	ENST00000311129	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000311129	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000311129	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000311129	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000311129	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000426998	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000426998	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000426998	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000426998	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000426998	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
intron-3CDS	ENST00000530787	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
intron-3CDS	ENST00000530787	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
intron-5UTR	ENST00000530787	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
intron-3UTR	ENST00000530787	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
intron-intron	ENST00000530787	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000527614	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000527614	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000527614	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000527614	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000527614	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000427203	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000427203	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000427203	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000427203	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000427203	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000341980	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000341980	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000341980	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000341980	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000341980	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000393055	ENST00000531154		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
Frame-shit	ENST00000393055	ENST00000398006		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-5UTR	ENST00000393055	ENST00000527228		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-3UTR	ENST00000393055	ENST00000524880		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
5CDS-intron	ENST00000393055	ENST00000527377		TCGA	RV	LUAD	TCGA-05-4420-01A	PPP2R1B	chr11	111612777	-	ALG9	chr11	111680497	-
In-frame	ENST00000287878	ENST00000072869		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
In-frame	ENST00000287878	ENST00000476491		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000418337	ENST00000072869		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000418337	ENST00000476491		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000433631	ENST00000072869		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000433631	ENST00000476491		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000492843	ENST00000072869		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000492843	ENST00000476491		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000392801	ENST00000072869		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000392801	ENST00000476491		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000461529	ENST00000072869		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000461529	ENST00000476491		TCGA	RV	LUAD	TCGA-97-A4M1-01A	PRKAG2	chr7	151573592	-	ADCK2	chr7	140374411	+
5CDS-intron	ENST00000394936	ENST00000257261		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394936	ENST00000522056		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394936	ENST00000278840		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394936	ENST00000521849		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394936	ENST00000574708		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394936	ENST00000522639		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394936	ENST00000517839		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000257261		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000522056		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000278840		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000521849		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000574708		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000522639		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000394934	ENST00000517839		TCGA	RV	LUAD	TCGA-73-4666-01A	PSAP	chr10	73576056	-	FADS2	chr11	61588853	+
5UTR-5UTR	ENST00000522684	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000522684	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000522684	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000522684	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000535192	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000535192	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000535192	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000535192	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000519465	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000519465	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000519465	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000519465	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000517887	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000517887	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000517887	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000517887	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000521059	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000521059	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000521059	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000521059	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000395218	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000395218	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000395218	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000395218	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000538769	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000538769	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000538769	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000538769	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000340930	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000340930	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000340930	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000340930	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000519419	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000519419	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000519419	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000519419	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000430260	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000430260	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000430260	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000430260	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000519881	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-5UTR	ENST00000519881	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000519881	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
5UTR-intron	ENST00000519881	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000520892	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000520892	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000520892	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000520892	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000519635	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000519635	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000519635	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000519635	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000517712	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000517712	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000517712	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000517712	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000522950	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000522950	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000522950	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000522950	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000520151	ENST00000378330		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000520151	ENST00000301030		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000520151	ENST00000563291		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000520151	ENST00000567736		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142011224	-	ANKRD11	chr16	89484776	-
In-frame	ENST00000230419	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000230419	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000230419	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000230419	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000349241	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000349241	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000349241	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000349241	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000345201	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000345201	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000345201	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000345201	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000352931	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000352931	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000352931	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000352931	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
intron-3CDS	ENST00000481273	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
intron-3CDS	ENST00000481273	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
intron-3CDS	ENST00000481273	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
intron-3CDS	ENST00000481273	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000476760	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000476760	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000476760	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000476760	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000471863	ENST00000372485		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000471863	ENST00000372488		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000471863	ENST00000414245		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
In-frame	ENST00000471863	ENST00000357338		TCGA	RV	LUAD	TCGA-05-4420-01A	PTK7	chr6	43044305	+	DLK2	chr6	43422212	-
Frame-shit	ENST00000523189	ENST00000518525		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
Frame-shit	ENST00000523189	ENST00000265294		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
Frame-shit	ENST00000523189	ENST00000519385		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
5CDS-intron	ENST00000523189	ENST00000519598		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
intron-3CDS	ENST00000521759	ENST00000518525		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
intron-3CDS	ENST00000521759	ENST00000265294		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
intron-3CDS	ENST00000521759	ENST00000519385		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
intron-intron	ENST00000521759	ENST00000519598		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	RANBP17	chr5	170308900	+	GABRP	chr5	170238960	+
In-frame	ENST00000439268	ENST00000303657		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000439268	ENST00000359161		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000439268	ENST00000592546		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5CDS-intron	ENST00000439268	ENST00000587700		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000340578	ENST00000303657		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000340578	ENST00000359161		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000340578	ENST00000592546		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5CDS-intron	ENST00000340578	ENST00000587700		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000541471	ENST00000303657		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000541471	ENST00000359161		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000541471	ENST00000592546		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5CDS-intron	ENST00000541471	ENST00000587700		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000591092	ENST00000303657		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000591092	ENST00000359161		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000591092	ENST00000592546		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5CDS-intron	ENST00000591092	ENST00000587700		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000034275	ENST00000303657		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000034275	ENST00000359161		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
In-frame	ENST00000034275	ENST00000592546		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5CDS-intron	ENST00000034275	ENST00000587700		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5UTR-3CDS	ENST00000591124	ENST00000303657		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5UTR-3CDS	ENST00000591124	ENST00000359161		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5UTR-3CDS	ENST00000591124	ENST00000592546		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
5UTR-intron	ENST00000591124	ENST00000587700		TCGA	RV	LUAD	TCGA-78-7220-01A	RANBP3	chr19	5978072	-	RFX2	chr19	6016282	-
intron-3CDS	ENST00000492220	ENST00000369111		TCGA	RV	LUAD	TCGA-55-7227-01A	RPRD2	chr1	150337395	+	CA14	chr1	150232546	+
In-frame	ENST00000401000	ENST00000369111		TCGA	RV	LUAD	TCGA-55-7227-01A	RPRD2	chr1	150337395	+	CA14	chr1	150232546	+
In-frame	ENST00000539519	ENST00000369111		TCGA	RV	LUAD	TCGA-55-7227-01A	RPRD2	chr1	150337395	+	CA14	chr1	150232546	+
In-frame	ENST00000369067	ENST00000369111		TCGA	RV	LUAD	TCGA-55-7227-01A	RPRD2	chr1	150337395	+	CA14	chr1	150232546	+
In-frame	ENST00000369068	ENST00000369111		TCGA	RV	LUAD	TCGA-55-7227-01A	RPRD2	chr1	150337395	+	CA14	chr1	150232546	+
In-frame	ENST00000480820	ENST00000457714		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000480820	ENST00000361589		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000480820	ENST00000401917		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000480820	ENST00000545397		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000480820	ENST00000466350		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000295930	ENST00000457714		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000295930	ENST00000361589		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000295930	ENST00000401917		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000295930	ENST00000545397		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000295930	ENST00000466350		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000464171	ENST00000457714		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000464171	ENST00000361589		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000464171	ENST00000401917		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000464171	ENST00000545397		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000464171	ENST00000466350		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000312179	ENST00000457714		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000312179	ENST00000361589		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000312179	ENST00000401917		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000312179	ENST00000545397		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000312179	ENST00000466350		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000475278	ENST00000457714		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000475278	ENST00000361589		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000475278	ENST00000401917		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000475278	ENST00000545397		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000475278	ENST00000466350		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
intron-3CDS	ENST00000496268	ENST00000457714		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
intron-3CDS	ENST00000496268	ENST00000361589		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
intron-3CDS	ENST00000496268	ENST00000401917		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
intron-3CDS	ENST00000496268	ENST00000545397		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
intron-intron	ENST00000496268	ENST00000466350		TCGA	RV	LUAD	TCGA-55-8092-01A	RSRC1	chr3	158072697	+	NLGN1	chr3	173525470	+
In-frame	ENST00000435607	ENST00000254816		TCGA	RV	LUAD	TCGA-78-7146-01A	SCN4A	chr17	62034522	-	TRIM47	chr17	73872573	-
In-frame	ENST00000435607	ENST00000587339		TCGA	RV	LUAD	TCGA-78-7146-01A	SCN4A	chr17	62034522	-	TRIM47	chr17	73872573	-
In-frame	ENST00000578147	ENST00000254816		TCGA	RV	LUAD	TCGA-78-7146-01A	SCN4A	chr17	62034522	-	TRIM47	chr17	73872573	-
In-frame	ENST00000578147	ENST00000587339		TCGA	RV	LUAD	TCGA-78-7146-01A	SCN4A	chr17	62034522	-	TRIM47	chr17	73872573	-
Frame-shit	ENST00000375300	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000375300	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000375300	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000292055	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000292055	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000292055	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
5UTR-3CDS	ENST00000375288	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
5UTR-3CDS	ENST00000375288	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
5UTR-3CDS	ENST00000375288	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
5UTR-3CDS	ENST00000434315	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
5UTR-3CDS	ENST00000434315	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
5UTR-3CDS	ENST00000434315	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000542607	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000542607	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000542607	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000446921	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000446921	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000446921	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
intron-3CDS	ENST00000488337	ENST00000300692		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
intron-3CDS	ENST00000488337	ENST00000529594		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
intron-3CDS	ENST00000488337	ENST00000392884		TCGA	RV	LUAD	TCGA-73-4658-01A	SIK3	chr11	116968859	-	CD3D	chr11	118210209	-
Frame-shit	ENST00000212015	ENST00000379261		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000416382		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000450189		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000542579		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000399850		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000417956		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000354440		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000427450		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000315874		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000608830		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000609692		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000354897		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000212015	ENST00000537122		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000379261		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000416382		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000450189		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000542579		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000399850		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000417956		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000354440		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000427450		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000315874		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000608830		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000609692		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000354897		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000497639	ENST00000537122		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000379261		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000416382		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000450189		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000542579		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000399850		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000417956		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000354440		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000427450		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000315874		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000608830		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000609692		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000354897		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
Frame-shit	ENST00000432464	ENST00000537122		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000379261		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000416382		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000450189		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000542579		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000399850		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000417956		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000354440		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000427450		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000315874		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000608830		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000609692		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000354897		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
5UTR-3CDS	ENST00000406900	ENST00000537122		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000379261		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000416382		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000450189		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000542579		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000399850		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000417956		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000354440		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000427450		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000315874		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000608830		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000609692		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000354897		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-3CDS	ENST00000403579	ENST00000537122		TCGA	RV	LUAD	TCGA-69-7978-01A	SIRT1	chr10	69651312	+	CELF2	chr10	11299701	+
intron-intron	ENST00000504570	ENST00000322349		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
intron-intron	ENST00000504570	ENST00000547833		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000382051	ENST00000322349		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000382051	ENST00000547833		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
intron-intron	ENST00000503434	ENST00000322349		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
intron-intron	ENST00000503434	ENST00000547833		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
intron-intron	ENST00000510033	ENST00000322349		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
intron-intron	ENST00000510033	ENST00000547833		TCGA	RV	LUAD	TCGA-55-7727-01A	SLC34A2	chr4	25680370	+	EEA1	chr12	93229203	-
intron-intron	ENST00000504880	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000504880	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000504880	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000504880	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000504880	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000504880	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000504880	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000396865	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000539768	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000318672	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000515629	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
5CDS-intron	ENST00000416547	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000518527		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000377360		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000328939		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000390656		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000520740		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000434108		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
intron-intron	ENST00000512595	ENST00000411494		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	SLC38A9	chr5	54945035	-	KCNIP1	chr5	170159804	+
Frame-shit	ENST00000554684	ENST00000267620		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000554684	ENST00000342058		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000554684	ENST00000556154		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000554684	ENST00000556961		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000428424	ENST00000267620		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000428424	ENST00000342058		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000428424	ENST00000556154		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000428424	ENST00000556961		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000337238	ENST00000267620		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000337238	ENST00000342058		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000337238	ENST00000556154		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000337238	ENST00000556961		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000554943	ENST00000267620		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000554943	ENST00000342058		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000554943	ENST00000556154		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000554943	ENST00000556961		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000555462	ENST00000267620		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000555462	ENST00000342058		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
Frame-shit	ENST00000555462	ENST00000556154		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
5CDS-intron	ENST00000555462	ENST00000556961		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000555718	ENST00000267620		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000555718	ENST00000342058		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
intron-3CDS	ENST00000555718	ENST00000556154		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
intron-intron	ENST00000555718	ENST00000556961		TCGA	RV	LUAD	TCGA-69-7979-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92403545	-
In-frame	ENST00000296215	ENST00000424085		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000257075		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000373747		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000426105		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000440538		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000373741		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000423018		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000296215	ENST00000373742		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5CDS-intron	ENST00000296215	ENST00000490546		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000424085		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000257075		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000373747		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000426105		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000440538		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000373741		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000423018		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-3CDS	ENST00000468040	ENST00000373742		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
5UTR-intron	ENST00000468040	ENST00000490546		TCGA	RV	LUAD	TCGA-71-8520-01A	SNIP1	chr1	38018246	-	PUM1	chr1	31501711	-
In-frame	ENST00000396526	ENST00000536774		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396526	ENST00000327441		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396526	ENST00000539062		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396526	ENST00000556451		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396526	ENST00000396294		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396526	ENST00000545536		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396526	ENST00000537471		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
5CDS-intron	ENST00000396526	ENST00000539174		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000536774		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000327441		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000539062		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000556451		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000396294		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000545536		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000396534	ENST00000537471		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
5CDS-intron	ENST00000396534	ENST00000539174		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000536774		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000327441		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000539062		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000556451		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000396294		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000545536		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000362031	ENST00000537471		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
5CDS-intron	ENST00000362031	ENST00000539174		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000536774		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000327441		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000539062		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000556451		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000396294		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000545536		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
Frame-shit	ENST00000355110	ENST00000537471		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
5CDS-intron	ENST00000355110	ENST00000539174		TCGA	RV	LUAD	TCGA-44-A479-01A	SNX6	chr14	35044962	-	MIPOL1	chr14	37892060	+
In-frame	ENST00000565975	ENST00000321728		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000565975	ENST00000303531		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000565975	ENST00000482000		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000565975	ENST00000498058		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000311008	ENST00000321728		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000311008	ENST00000303531		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000311008	ENST00000482000		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000311008	ENST00000498058		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000323081	ENST00000321728		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000323081	ENST00000303531		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000323081	ENST00000482000		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000323081	ENST00000498058		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000334536	ENST00000321728		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
In-frame	ENST00000334536	ENST00000303531		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000334536	ENST00000482000		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000334536	ENST00000498058		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000352260	ENST00000321728		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000352260	ENST00000303531		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
intron-intron	ENST00000352260	ENST00000482000		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
intron-intron	ENST00000352260	ENST00000498058		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
3UTR-3CDS	ENST00000561868	ENST00000321728		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
3UTR-3CDS	ENST00000561868	ENST00000303531		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
3UTR-intron	ENST00000561868	ENST00000482000		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
3UTR-intron	ENST00000561868	ENST00000498058		TCGA	RV	LUAD	TCGA-83-5908-01A	SPNS1	chr16	28986878	+	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000487143	ENST00000360093		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
intron-3CDS	ENST00000487143	ENST00000283254		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
intron-3CDS	ENST00000487143	ENST00000409101		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
intron-intron	ENST00000487143	ENST00000540861		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
intron-intron	ENST00000487143	ENST00000465043		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
Frame-shit	ENST00000355999	ENST00000360093		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
Frame-shit	ENST00000355999	ENST00000283254		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
Frame-shit	ENST00000355999	ENST00000409101		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
5CDS-intron	ENST00000355999	ENST00000540861		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
5CDS-intron	ENST00000355999	ENST00000465043		TCGA	RV	LUAD	TCGA-55-6968-01A	STK39	chr2	168986051	-	SCN3A	chr2	166012413	-
In-frame	ENST00000355683	ENST00000331968		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
In-frame	ENST00000355683	ENST00000415220		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
5CDS-intron	ENST00000355683	ENST00000551644		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
In-frame	ENST00000357479	ENST00000331968		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
In-frame	ENST00000357479	ENST00000415220		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
5CDS-intron	ENST00000357479	ENST00000551644		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
intron-3CDS	ENST00000366206	ENST00000331968		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
intron-3CDS	ENST00000366206	ENST00000415220		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
intron-intron	ENST00000366206	ENST00000551644		TCGA	RV	LUAD	TCGA-44-3918-01A	STRN3	chr14	31495110	-	PRKD1	chr14	30194880	-
5CDS-intron	ENST00000377897	ENST00000311713		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000377897	ENST00000278856		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000377897	ENST00000529106		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000377897	ENST00000525239		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000377897	ENST00000525752		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000377897	ENST00000540620		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000294179	ENST00000311713		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000294179	ENST00000278856		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000294179	ENST00000529106		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000294179	ENST00000525239		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000294179	ENST00000525752		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000294179	ENST00000540620		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000394690	ENST00000311713		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000394690	ENST00000278856		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000394690	ENST00000529106		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000394690	ENST00000525239		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000394690	ENST00000525752		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000394690	ENST00000540620		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
intron-intron	ENST00000541317	ENST00000311713		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
intron-intron	ENST00000541317	ENST00000278856		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000541317	ENST00000529106		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000541317	ENST00000525239		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000541317	ENST00000525752		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
intron-intron	ENST00000541317	ENST00000540620		TCGA	RV	LUAD	TCGA-75-6214-01A	STX5	chr11	62598491	-	WDR74	chr11	62607131	-
Frame-shit	ENST00000447399	ENST00000396604		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000396602		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000530463		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000396597		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000299606		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000396604		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000396602		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000530463		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000396597		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000299606		TCGA	RV	LUAD	TCGA-73-4666-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
5CDS-3UTR	ENST00000252996	ENST00000371497		TCGA	RV	LUAD	TCGA-50-5072-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000252996	ENST00000603338		TCGA	RV	LUAD	TCGA-50-5072-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000252996	ENST00000329613		TCGA	RV	LUAD	TCGA-50-5072-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000609045	ENST00000371497		TCGA	RV	LUAD	TCGA-50-5072-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000609045	ENST00000603338		TCGA	RV	LUAD	TCGA-50-5072-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
intron-intron	ENST00000609045	ENST00000329613		TCGA	RV	LUAD	TCGA-50-5072-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000380822	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5CDS-intron	ENST00000380822	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000502819	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000502819	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5CDS-intron	ENST00000380818	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5CDS-intron	ENST00000380818	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
intron-intron	ENST00000512561	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
intron-intron	ENST00000512561	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000506736	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000506736	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000328663	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000328663	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000217893	ENST00000314351		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
5UTR-intron	ENST00000217893	ENST00000536360		TCGA	RV	LUAD	TCGA-44-6147-01A	TAF9	chr5	68662330	-	ADAMTS6	chr5	64625310	-
3UTR-3CDS	ENST00000539805	ENST00000328041		TCGA	RV	LUAD	TCGA-97-7937-01A	TASP1	chr20	13398095	-	SLC24A3	chr20	19646508	+
5UTR-3CDS	ENST00000480436	ENST00000328041		TCGA	RV	LUAD	TCGA-97-7937-01A	TASP1	chr20	13398095	-	SLC24A3	chr20	19646508	+
Frame-shit	ENST00000337743	ENST00000328041		TCGA	RV	LUAD	TCGA-97-7937-01A	TASP1	chr20	13398095	-	SLC24A3	chr20	19646508	+
intron-3CDS	ENST00000544472	ENST00000328041		TCGA	RV	LUAD	TCGA-97-7937-01A	TASP1	chr20	13398095	-	SLC24A3	chr20	19646508	+
Frame-shit	ENST00000433529	ENST00000356842		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000433529	ENST00000359629		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000433529	ENST00000538214		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000433529	ENST00000537768		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000433529	ENST00000335712		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000433529	ENST00000477659		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000433529	ENST00000358510		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000415783	ENST00000356842		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000415783	ENST00000359629		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000415783	ENST00000538214		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000415783	ENST00000537768		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000415783	ENST00000335712		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000415783	ENST00000477659		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000415783	ENST00000358510		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000282574	ENST00000356842		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000282574	ENST00000359629		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000282574	ENST00000538214		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000282574	ENST00000537768		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000282574	ENST00000335712		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000282574	ENST00000477659		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000282574	ENST00000358510		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000445587	ENST00000356842		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000445587	ENST00000359629		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000445587	ENST00000538214		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000445587	ENST00000537768		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000445587	ENST00000335712		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000445587	ENST00000477659		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000445587	ENST00000358510		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-3CDS	ENST00000482876	ENST00000356842		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-3CDS	ENST00000482876	ENST00000359629		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-intron	ENST00000482876	ENST00000538214		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-5UTR	ENST00000482876	ENST00000537768		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-5UTR	ENST00000482876	ENST00000335712		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-5UTR	ENST00000482876	ENST00000477659		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
intron-intron	ENST00000482876	ENST00000358510		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000416149	ENST00000356842		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000416149	ENST00000359629		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000416149	ENST00000538214		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000416149	ENST00000537768		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000416149	ENST00000335712		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-5UTR	ENST00000416149	ENST00000477659		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
5CDS-intron	ENST00000416149	ENST00000358510		TCGA	RV	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60695968	-
Frame-shit	ENST00000292090	ENST00000268766		TCGA	RV	LUAD	TCGA-69-A59K-01A	TLCD1	chr17	27052922	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000292090	ENST00000593261		TCGA	RV	LUAD	TCGA-69-A59K-01A	TLCD1	chr17	27052922	-	NEK8	chr17	27061001	+
intron-3CDS	ENST00000394933	ENST00000268766		TCGA	RV	LUAD	TCGA-69-A59K-01A	TLCD1	chr17	27052922	-	NEK8	chr17	27061001	+
intron-3UTR	ENST00000394933	ENST00000593261		TCGA	RV	LUAD	TCGA-69-A59K-01A	TLCD1	chr17	27052922	-	NEK8	chr17	27061001	+
5CDS-intron	ENST00000335464	ENST00000340415		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000402449		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000528438		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000392615		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000392614		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000392613		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000392612		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000335464	ENST00000392610		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000340415		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000402449		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000528438		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000392615		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000392614		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000392613		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000392612		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000417024	ENST00000392610		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000340415		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000402449		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000528438		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000392615		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000392614		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000392613		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000392612		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582773	ENST00000392610		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000340415		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000402449		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000528438		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000392615		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000392614		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000392613		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000392612		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
5CDS-intron	ENST00000582330	ENST00000392610		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000340415		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000402449		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000528438		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000392615		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000392614		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000392613		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000392612		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
intron-intron	ENST00000584171	ENST00000392610		TCGA	RV	LUAD	TCGA-05-4420-01A	TMEM104	chr17	72773514	+	RAB37	chr17	72736907	+
In-frame	ENST00000528080	ENST00000338694		TCGA	RV	LUAD	TCGA-50-8460-01A	TMEM41B	chr11	9321131	-	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000528080	ENST00000535086		TCGA	RV	LUAD	TCGA-50-8460-01A	TMEM41B	chr11	9321131	-	TEKT1	chr17	6719281	-
In-frame	ENST00000527813	ENST00000338694		TCGA	RV	LUAD	TCGA-50-8460-01A	TMEM41B	chr11	9321131	-	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000527813	ENST00000535086		TCGA	RV	LUAD	TCGA-50-8460-01A	TMEM41B	chr11	9321131	-	TEKT1	chr17	6719281	-
In-frame	ENST00000533723	ENST00000338694		TCGA	RV	LUAD	TCGA-50-8460-01A	TMEM41B	chr11	9321131	-	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000533723	ENST00000535086		TCGA	RV	LUAD	TCGA-50-8460-01A	TMEM41B	chr11	9321131	-	TEKT1	chr17	6719281	-
Frame-shit	ENST00000311922	ENST00000287437		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000311922	ENST00000522563		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000311922	ENST00000517315		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000311922	ENST00000521460		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000520847	ENST00000287437		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000520847	ENST00000522563		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000520847	ENST00000517315		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000520847	ENST00000521460		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521778	ENST00000287437		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521778	ENST00000522563		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521778	ENST00000517315		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
intron-intron	ENST00000521778	ENST00000521460		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000519576	ENST00000287437		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000519576	ENST00000522563		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000519576	ENST00000517315		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5UTR-intron	ENST00000519576	ENST00000521460		TCGA	RV	LUAD	TCGA-55-7903-01A	TRIB1	chr8	126445851	+	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000346141	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000346141	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000346141	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000346141	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000325752	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000325752	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000325752	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000325752	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000340993	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000340993	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000340993	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000340993	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000394239	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000394239	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000394239	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000394239	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-3CDS	ENST00000592426	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-3CDS	ENST00000592426	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-intron	ENST00000592426	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-intron	ENST00000592426	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-3CDS	ENST00000376094	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-3CDS	ENST00000376094	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-intron	ENST00000376094	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
intron-intron	ENST00000376094	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000539018	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000539018	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000539018	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000539018	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000591611	ENST00000300896		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-3CDS	ENST00000591611	ENST00000592339		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000591611	ENST00000393003		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
5UTR-intron	ENST00000591611	ENST00000586881		TCGA	RV	LUAD	TCGA-49-6745-01A	TUBD1	chr17	57970058	-	USP32	chr17	58270291	-
Frame-shit	ENST00000371756	ENST00000358701		TCGA	RV	LUAD	TCGA-38-4630-01A	UBAC1	chr9	138839644	-	QSOX2	chr9	139118720	-
intron-3CDS	ENST00000465873	ENST00000358701		TCGA	RV	LUAD	TCGA-38-4630-01A	UBAC1	chr9	138839644	-	QSOX2	chr9	139118720	-
In-frame	ENST00000348165	ENST00000297537		TCGA	RV	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150846229	-
5CDS-intron	ENST00000348165	ENST00000475831		TCGA	RV	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150846229	-
intron-3CDS	ENST00000389103	ENST00000297537		TCGA	RV	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150846229	-
intron-intron	ENST00000389103	ENST00000475831		TCGA	RV	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150846229	-
In-frame	ENST00000261776	ENST00000393567		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000448089		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000448691		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000321489		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000538248		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000541601		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000288168		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000393550		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
5CDS-intron	ENST00000261776	ENST00000543639		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-3CDS	ENST00000571759	ENST00000393567		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000448089		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000448691		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000321489		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000538248		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000541601		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000288168		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000393550		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000571759	ENST00000543639		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-3CDS	ENST00000536184	ENST00000393567		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000448089		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000448691		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000321489		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000538248		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000541601		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000288168		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000393550		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
intron-intron	ENST00000536184	ENST00000543639		TCGA	RV	LUAD	TCGA-44-5645-01A	VAC14	chr16	70834700	-	HYDIN	chr16	70913659	-
Frame-shit	ENST00000395996	ENST00000382080		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000395996	ENST00000421524		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
Frame-shit	ENST00000358544	ENST00000382080		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000358544	ENST00000421524		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
Frame-shit	ENST00000357162	ENST00000382080		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000357162	ENST00000421524		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
Frame-shit	ENST00000355155	ENST00000382080		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
5CDS-intron	ENST00000355155	ENST00000421524		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
intron-3CDS	ENST00000441350	ENST00000382080		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
intron-intron	ENST00000441350	ENST00000421524		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
3UTR-3CDS	ENST00000521932	ENST00000382080		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
3UTR-intron	ENST00000521932	ENST00000421524		TCGA	RV	LUAD	TCGA-97-8171-01A	VPS13B	chr8	100205285	+	SGCZ	chr8	14181713	-
Frame-shit	ENST00000354473	ENST00000356728		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
Frame-shit	ENST00000354473	ENST00000392697		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
Frame-shit	ENST00000354473	ENST00000318247		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
5CDS-intron	ENST00000354473	ENST00000480719		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000496809	ENST00000356728		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000496809	ENST00000392697		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000496809	ENST00000318247		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
intron-intron	ENST00000496809	ENST00000480719		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	VPS72	chr1	151162481	-	RORC	chr1	151789756	-
3UTR-intron	ENST00000375664	ENST00000528498		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000375664	ENST00000528900		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000375664	ENST00000405097		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000375664	ENST00000530301		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000375664	ENST00000343115		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000375664	ENST00000544551		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000375646	ENST00000528498		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000375646	ENST00000528900		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000375646	ENST00000405097		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000375646	ENST00000530301		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000375646	ENST00000343115		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000375646	ENST00000544551		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000347934	ENST00000528498		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000347934	ENST00000528900		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000347934	ENST00000405097		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000347934	ENST00000530301		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000347934	ENST00000343115		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000347934	ENST00000544551		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000354911	ENST00000528498		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000354911	ENST00000528900		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000354911	ENST00000405097		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000354911	ENST00000530301		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000354911	ENST00000343115		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
3UTR-intron	ENST00000354911	ENST00000544551		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000428935	ENST00000528498		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000428935	ENST00000528900		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000428935	ENST00000405097		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000428935	ENST00000530301		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000428935	ENST00000343115		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000428935	ENST00000544551		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000532233	ENST00000528498		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000532233	ENST00000528900		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000532233	ENST00000405097		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000532233	ENST00000530301		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000532233	ENST00000343115		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000532233	ENST00000544551		TCGA	RV	LUAD	TCGA-86-7955-01A	WAC	chr10	28909462	+	RDX	chr11	110050642	-
intron-intron	ENST00000392882	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000392882	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000392882	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000358655	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000358655	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000358655	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000355338	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000355338	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000355338	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000344102	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000344102	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000344102	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000557135	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000557135	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000557135	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000556645	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000556645	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000556645	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000554084	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000554084	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
intron-intron	ENST00000554084	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7542-01A	WARS	chr14	100800816	-	UTRN	chr6	144665237	+
5CDS-5UTR	ENST00000535572	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000535572	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000535572	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000535572	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000535572	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000535572	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000535572	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000535572	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000537687	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000537687	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000537687	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000537687	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000537687	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000537687	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000537687	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000537687	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000315939	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000315939	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000315939	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000315939	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000315939	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000315939	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000315939	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000315939	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000447667	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000447667	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000447667	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000447667	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000447667	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000447667	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000447667	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000447667	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000530271	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000530271	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000530271	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000530271	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000530271	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000530271	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000530271	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000530271	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000540360	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000540360	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000540360	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000540360	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000540360	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000540360	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000540360	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000540360	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000340908	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000340908	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000340908	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000340908	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000340908	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-5UTR	ENST00000340908	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000340908	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
5CDS-intron	ENST00000340908	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000574564	ENST00000358495		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000574564	ENST00000430095		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000574564	ENST00000539046		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000574564	ENST00000536177		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000574564	ENST00000544742		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-5UTR	ENST00000574564	ENST00000541619		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000574564	ENST00000535376		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
intron-intron	ENST00000574564	ENST00000545564		TCGA	RV	LUAD	TCGA-86-8585-01A	WNK1	chr12	998389	+	RAD52	chr12	1042242	-
3UTR-3CDS	ENST00000581865	ENST00000184956		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
3UTR-3CDS	ENST00000581865	ENST00000585976		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
3UTR-intron	ENST00000581865	ENST00000585712		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
In-frame	ENST00000312655	ENST00000184956		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
In-frame	ENST00000312655	ENST00000585976		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
5CDS-intron	ENST00000312655	ENST00000585712		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
In-frame	ENST00000585166	ENST00000184956		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
In-frame	ENST00000585166	ENST00000585976		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
5CDS-intron	ENST00000585166	ENST00000585712		TCGA	RV	LUAD	TCGA-55-8615-01A	YPEL2	chr17	57466829	+	HEATR6	chr17	58145093	-
5UTR-intron	ENST00000462705	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000462705	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000462705	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000462705	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000462705	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000462705	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000393785	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000393785	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000393785	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000393785	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000393785	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000393785	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000481632	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000481632	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000481632	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000481632	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000481632	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000481632	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000471418	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000471418	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000471418	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000471418	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000471418	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000471418	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000357258	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000357258	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000357258	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000357258	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000357258	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000357258	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000464560	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000464560	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000464560	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000464560	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000464560	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
5UTR-intron	ENST00000464560	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000488663	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000488663	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000488663	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000488663	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000488663	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000488663	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000474710	ENST00000470610		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000474710	ENST00000389672		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000474710	ENST00000542517		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000474710	ENST00000514100		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000474710	ENST00000502694		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
intron-intron	ENST00000474710	ENST00000442602		TCGA	RV	LUAD	TCGA-78-7162-01A	ZBTB20	chr3	114219199	-	EPHA6	chr3	97439105	+
Frame-shit	ENST00000337963	ENST00000382778		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000337963	ENST00000351808		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000337963	ENST00000319980		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000337963	ENST00000537103		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
5CDS-intron	ENST00000337963	ENST00000461115		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382907	ENST00000382778		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382907	ENST00000351808		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382907	ENST00000319980		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382907	ENST00000537103		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
5CDS-intron	ENST00000382907	ENST00000461115		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382905	ENST00000382778		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382905	ENST00000351808		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382905	ENST00000319980		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
Frame-shit	ENST00000382905	ENST00000537103		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
5CDS-intron	ENST00000382905	ENST00000461115		TCGA	RV	LUAD	TCGA-78-7154-01A	ZMYM5	chr13	20425495	-	IFT88	chr13	21215429	+
5UTR-3CDS	ENST00000456324	ENST00000400546		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000456324	ENST00000284894		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000456324	ENST00000535285		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-intron	ENST00000456324	ENST00000486367		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
3UTR-3CDS	ENST00000586094	ENST00000400546		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
3UTR-3CDS	ENST00000586094	ENST00000284894		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
3UTR-3CDS	ENST00000586094	ENST00000535285		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
3UTR-intron	ENST00000586094	ENST00000486367		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000443387	ENST00000400546		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000443387	ENST00000284894		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000443387	ENST00000535285		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-intron	ENST00000443387	ENST00000486367		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	ZNF146	chr19	36706098	+	NCAM2	chr21	22696703	+
5UTR-5UTR	ENST00000591289	ENST00000300853		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000591289	ENST00000423698		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-intron	ENST00000591289	ENST00000588738		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000591289	ENST00000340192		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000591289	ENST00000591636		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000591289	ENST00000589165		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000591289	ENST00000013807		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000291187	ENST00000300853		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000291187	ENST00000423698		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-intron	ENST00000291187	ENST00000588738		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000291187	ENST00000340192		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000291187	ENST00000591636		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000291187	ENST00000589165		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000291187	ENST00000013807		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000588931	ENST00000300853		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000588931	ENST00000423698		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-intron	ENST00000588931	ENST00000588738		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000588931	ENST00000340192		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000588931	ENST00000591636		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000588931	ENST00000589165		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
5UTR-5UTR	ENST00000588931	ENST00000013807		TCGA	RV	LUAD	TCGA-55-6969-01A	ZNF229	chr19	44951701	-	ERCC1	chr19	45926639	-
3UTR-3CDS	ENST00000410075	ENST00000379350		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-intron	ENST00000410075	ENST00000379348		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-intron	ENST00000410075	ENST00000332995		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-3UTR	ENST00000410075	ENST00000482982		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-5UTR	ENST00000410075	ENST00000379345		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-5UTR	ENST00000410075	ENST00000457702		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-intron	ENST00000410075	ENST00000379335		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
3UTR-intron	ENST00000410075	ENST00000379329		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000377802	ENST00000379350		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000377802	ENST00000379348		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000377802	ENST00000332995		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000377802	ENST00000482982		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000377802	ENST00000379345		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000377802	ENST00000457702		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000377802	ENST00000379335		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000377802	ENST00000379329		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000355812	ENST00000379350		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000355812	ENST00000379348		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000355812	ENST00000332995		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000355812	ENST00000482982		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000355812	ENST00000379345		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000355812	ENST00000457702		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000355812	ENST00000379335		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000355812	ENST00000379329		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000409544	ENST00000379350		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409544	ENST00000379348		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409544	ENST00000332995		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000409544	ENST00000482982		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000409544	ENST00000379345		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000409544	ENST00000457702		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409544	ENST00000379335		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409544	ENST00000379329		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000264447	ENST00000379350		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000264447	ENST00000379348		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000264447	ENST00000332995		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000264447	ENST00000482982		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000264447	ENST00000379345		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000264447	ENST00000457702		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000264447	ENST00000379335		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000264447	ENST00000379329		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3CDS	ENST00000409407	ENST00000379350		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409407	ENST00000379348		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409407	ENST00000332995		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-3UTR	ENST00000409407	ENST00000482982		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000409407	ENST00000379345		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-5UTR	ENST00000409407	ENST00000457702		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409407	ENST00000379335		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
intron-intron	ENST00000409407	ENST00000379329		TCGA	RV	LUAD	TCGA-44-7670-01A	ZNF638	chr2	71503884	+	PHACTR1	chr6	13160436	+
In-frame	ENST00000353139	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000353139	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000353139	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000360679	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000360679	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000360679	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
Frame-shit	ENST00000394406	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
Frame-shit	ENST00000394406	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000394406	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
Frame-shit	ENST00000335166	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
Frame-shit	ENST00000335166	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000335166	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000416895	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000416895	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000416895	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000361253	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000361253	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000361253	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000588142	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000588142	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000588142	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000589665	ENST00000264659		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-3CDS	ENST00000589665	ENST00000578925		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
intron-intron	ENST00000589665	ENST00000398579		TCGA	RV	LUAD	TCGA-69-7979-01A	ACACA	chr17	35468466	-	SRCIN1	chr17	36735044	-
In-frame	ENST00000532485	ENST00000328257		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
In-frame	ENST00000532485	ENST00000398427		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
5CDS-intron	ENST00000532485	ENST00000542710		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
5CDS-intron	ENST00000532485	ENST00000543525		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
3UTR-3CDS	ENST00000530182	ENST00000328257		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
3UTR-3CDS	ENST00000530182	ENST00000398427		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
3UTR-intron	ENST00000530182	ENST00000542710		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
3UTR-intron	ENST00000530182	ENST00000543525		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-3CDS	ENST00000526597	ENST00000328257		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-3CDS	ENST00000526597	ENST00000398427		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-intron	ENST00000526597	ENST00000542710		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-intron	ENST00000526597	ENST00000543525		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
In-frame	ENST00000533873	ENST00000328257		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
In-frame	ENST00000533873	ENST00000398427		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
5CDS-intron	ENST00000533873	ENST00000542710		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
5CDS-intron	ENST00000533873	ENST00000543525		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
In-frame	ENST00000538157	ENST00000328257		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
In-frame	ENST00000538157	ENST00000398427		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
5CDS-intron	ENST00000538157	ENST00000542710		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
5CDS-intron	ENST00000538157	ENST00000543525		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-3CDS	ENST00000544113	ENST00000328257		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-3CDS	ENST00000544113	ENST00000398427		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-intron	ENST00000544113	ENST00000542710		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
intron-intron	ENST00000544113	ENST00000543525		TCGA	RV	LUAD	TCGA-05-5425-01A	ACER3	chr11	76670075	+	PPME1	chr11	73933357	+
Frame-shit	ENST00000409236	ENST00000335681		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000409236	ENST00000542504		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
5CDS-intron	ENST00000409236	ENST00000486017		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000356421	ENST00000335681		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000356421	ENST00000542504		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
5CDS-intron	ENST00000356421	ENST00000486017		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000317233	ENST00000335681		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000317233	ENST00000542504		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
5CDS-intron	ENST00000317233	ENST00000486017		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000409579	ENST00000335681		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
Frame-shit	ENST00000409579	ENST00000542504		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
5CDS-intron	ENST00000409579	ENST00000486017		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
intron-3CDS	ENST00000483600	ENST00000335681		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
intron-3CDS	ENST00000483600	ENST00000542504		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
intron-intron	ENST00000483600	ENST00000486017		TCGA	RV	LUAD	TCGA-97-8174-01A	AFF3	chr2	100623094	-	NPAS2	chr2	101604541	+
In-frame	ENST00000546278	ENST00000359015		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000546278	ENST00000355845		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
5CDS-intron	ENST00000546278	ENST00000463140		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000357578	ENST00000359015		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000357578	ENST00000355845		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
5CDS-intron	ENST00000357578	ENST00000463140		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000491546	ENST00000359015		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000491546	ENST00000355845		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
5CDS-intron	ENST00000491546	ENST00000463140		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000348925	ENST00000359015		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
In-frame	ENST00000348925	ENST00000355845		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
5CDS-intron	ENST00000348925	ENST00000463140		TCGA	RV	LUAD	TCGA-69-7980-01A	ALDH5A1	chr6	24505213	+	MAP3K5	chr6	136880014	-
5CDS-5UTR	ENST00000358602	ENST00000568606		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000358602	ENST00000260324		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
intron-5UTR	ENST00000509867	ENST00000568606		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
intron-5UTR	ENST00000509867	ENST00000260324		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000330838	ENST00000568606		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000330838	ENST00000260324		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
intron-5UTR	ENST00000514252	ENST00000568606		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
intron-5UTR	ENST00000514252	ENST00000260324		TCGA	RV	LUAD	TCGA-78-7539-01A	ANKRD17	chr4	74123993	-	SQRDL	chr15	45951105	+
In-frame	ENST00000375687	ENST00000398022		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375687	ENST00000217315		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000542461	ENST00000398022		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000542461	ENST00000217315		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000375689	ENST00000398022		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375689	ENST00000217315		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000306058	ENST00000398022		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000306058	ENST00000217315		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
3UTR-3CDS	ENST00000470145	ENST00000398022		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
3UTR-5UTR	ENST00000470145	ENST00000217315		TCGA	RV	LUAD	TCGA-91-7771-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
Frame-shit	ENST00000283558	ENST00000356049		TCGA	RV	LUAD	TCGA-44-2655-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000375630	ENST00000356049		TCGA	RV	LUAD	TCGA-44-2655-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000487903	ENST00000356049		TCGA	RV	LUAD	TCGA-44-2655-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000375645	ENST00000356049		TCGA	RV	LUAD	TCGA-44-2655-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
intron-3CDS	ENST00000419448	ENST00000356049		TCGA	RV	LUAD	TCGA-44-2655-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000358716	ENST00000354822		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000358716	ENST00000498187		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000358716	ENST00000518149		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000358716	ENST00000522719		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
In-frame	ENST00000382422	ENST00000354822		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000382422	ENST00000498187		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000382422	ENST00000518149		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000382422	ENST00000522719		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
Frame-shit	ENST00000360310	ENST00000354822		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000360310	ENST00000498187		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000360310	ENST00000518149		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5CDS-5UTR	ENST00000360310	ENST00000522719		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5UTR-3CDS	ENST00000553853	ENST00000354822		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5UTR-5UTR	ENST00000553853	ENST00000498187		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5UTR-5UTR	ENST00000553853	ENST00000518149		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
5UTR-5UTR	ENST00000553853	ENST00000522719		TCGA	RV	LUAD	TCGA-L9-A444-01A	BAZ1A	chr14	35331250	-	NKX2-1	chr14	36988575	-
In-frame	ENST00000448841	ENST00000302424		TCGA	RV	LUAD	TCGA-67-6217-01A	WBP1L	chr10	104503900	+	TRIM8	chr10	104414410	+
5CDS-3UTR	ENST00000448841	ENST00000487927		TCGA	RV	LUAD	TCGA-67-6217-01A	WBP1L	chr10	104503900	+	TRIM8	chr10	104414410	+
intron-3CDS	ENST00000369889	ENST00000302424		TCGA	RV	LUAD	TCGA-67-6217-01A	WBP1L	chr10	104503900	+	TRIM8	chr10	104414410	+
intron-3UTR	ENST00000369889	ENST00000487927		TCGA	RV	LUAD	TCGA-67-6217-01A	WBP1L	chr10	104503900	+	TRIM8	chr10	104414410	+
Frame-shit	ENST00000341394	ENST00000299413		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000341394	ENST00000532066		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000389645	ENST00000299413		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000389645	ENST00000532066		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000532820	ENST00000299413		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000532820	ENST00000532066		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000530820	ENST00000299413		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000530820	ENST00000532066		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
intron-3CDS	ENST00000529307	ENST00000299413		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000529307	ENST00000532066		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
intron-3CDS	ENST00000533657	ENST00000299413		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000533657	ENST00000532066		TCGA	RV	LUAD	TCGA-J2-A4AD-01A	CAPRIN1	chr11	34074183	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000249064	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	CCDC117	chr22	29169766	+	OSTF1	chr9	77761599	+
intron-3CDS	ENST00000448492	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	CCDC117	chr22	29169766	+	OSTF1	chr9	77761599	+
Frame-shit	ENST00000421503	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	CCDC117	chr22	29169766	+	OSTF1	chr9	77761599	+
5UTR-3CDS	ENST00000443309	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	CCDC117	chr22	29169766	+	OSTF1	chr9	77761599	+
Frame-shit	ENST00000359314	ENST00000371460		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
Frame-shit	ENST00000359314	ENST00000371459		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
Frame-shit	ENST00000359314	ENST00000371461		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
Frame-shit	ENST00000359314	ENST00000306867		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000359314	ENST00000371458		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
5CDS-intron	ENST00000359314	ENST00000459689		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486693	ENST00000371460		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486693	ENST00000371459		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486693	ENST00000371461		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000486693	ENST00000306867		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-intron	ENST00000486693	ENST00000371458		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-intron	ENST00000486693	ENST00000459689		TCGA	RV	LUAD	TCGA-55-1595-01A	CD2AP	chr6	47501491	+	SUPT3H	chr6	45073743	-
intron-3CDS	ENST00000331006	ENST00000268704		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
intron-intron	ENST00000331006	ENST00000341316		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
intron-intron	ENST00000331006	ENST00000565891		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
Frame-shit	ENST00000353379	ENST00000268704		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
5CDS-intron	ENST00000353379	ENST00000341316		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
5CDS-intron	ENST00000353379	ENST00000565891		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
5UTR-3CDS	ENST00000505473	ENST00000268704		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
5UTR-intron	ENST00000505473	ENST00000341316		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
5UTR-intron	ENST00000505473	ENST00000565891		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
3UTR-3CDS	ENST00000514965	ENST00000268704		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
3UTR-intron	ENST00000514965	ENST00000341316		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
3UTR-intron	ENST00000514965	ENST00000565891		TCGA	RV	LUAD	TCGA-55-A48Y-01A	CDK10	chr16	89753167	+	SPG7	chr16	89611056	+
5CDS-intron	ENST00000274695	ENST00000510325		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000274695	ENST00000359359		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-5UTR	ENST00000274695	ENST00000480824		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000274695	ENST00000355190		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000274695	ENST00000373685		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000378624	ENST00000510325		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000378624	ENST00000359359		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-5UTR	ENST00000378624	ENST00000480824		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000378624	ENST00000355190		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000378624	ENST00000373685		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000378610	ENST00000510325		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000378610	ENST00000359359		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-5UTR	ENST00000378610	ENST00000480824		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000378610	ENST00000355190		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-intron	ENST00000378610	ENST00000373685		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000476517	ENST00000510325		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000476517	ENST00000359359		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-5UTR	ENST00000476517	ENST00000480824		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000476517	ENST00000355190		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
intron-intron	ENST00000476517	ENST00000373685		TCGA	RV	LUAD	TCGA-91-6847-01A	CDKAL1	chr6	20548936	+	C6orf89	chr6	36862280	+
5CDS-5UTR	ENST00000264935	ENST00000360578		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	CEP72	chr5	620376	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000444221	ENST00000360578		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	CEP72	chr5	620376	+	TPPP	chr5	678179	-
intron-5UTR	ENST00000514507	ENST00000360578		TCGA	RV	LUAD	TCGA-MP-A4T8-01A	CEP72	chr5	620376	+	TPPP	chr5	678179	-
5CDS-5UTR	ENST00000434302	ENST00000328656		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000434302	ENST00000398938		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000434302	ENST00000398932		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000434302	ENST00000398930		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000434302	ENST00000398934		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000438847	ENST00000328656		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000438847	ENST00000398938		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000438847	ENST00000398932		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000438847	ENST00000398930		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000438847	ENST00000398934		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000604556	ENST00000328656		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000604556	ENST00000398938		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000604556	ENST00000398932		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000604556	ENST00000398930		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
3UTR-5UTR	ENST00000604556	ENST00000398934		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000262622	ENST00000328656		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000262622	ENST00000398938		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000262622	ENST00000398932		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000262622	ENST00000398930		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-5UTR	ENST00000262622	ENST00000398934		TCGA	RV	LUAD	TCGA-38-4632-01A	CHST8	chr19	34180297	+	KCNJ15	chr21	39668848	+
5CDS-intron	ENST00000304636	ENST00000216297		TCGA	RV	LUAD	TCGA-50-8459-01A	COL3A1	chr2	189877472	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000304636	ENST00000555943		TCGA	RV	LUAD	TCGA-50-8459-01A	COL3A1	chr2	189877472	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000317840	ENST00000216297		TCGA	RV	LUAD	TCGA-50-8459-01A	COL3A1	chr2	189877472	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000317840	ENST00000555943		TCGA	RV	LUAD	TCGA-50-8459-01A	COL3A1	chr2	189877472	+	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000262367	ENST00000293872		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000262367	ENST00000337351		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000262367	ENST00000397783		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000262367	ENST00000397780		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
5CDS-intron	ENST00000262367	ENST00000494366		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000382070	ENST00000293872		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000382070	ENST00000337351		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000382070	ENST00000397783		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000382070	ENST00000397780		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
5CDS-intron	ENST00000382070	ENST00000494366		TCGA	RV	LUAD	TCGA-J2-A4AG-01A	CREBBP	chr16	3828012	-	LUC7L	chr16	243014	-
Frame-shit	ENST00000452533	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000452533	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000452533	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000553257	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000553257	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000553257	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000549701	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000549701	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000549701	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000358214	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000358214	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000358214	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
3UTR-3CDS	ENST00000548671	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
3UTR-intron	ENST00000548671	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
3UTR-intron	ENST00000548671	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000266481	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000266481	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000266481	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000547312	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000547312	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000547312	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5UTR-3CDS	ENST00000414834	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5UTR-intron	ENST00000414834	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5UTR-intron	ENST00000414834	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000381000	ENST00000381340		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000381000	ENST00000545902		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
5CDS-intron	ENST00000381000	ENST00000242737		TCGA	RV	LUAD	TCGA-55-6986-01A	DNM1L	chr12	32832399	+	ITPR2	chr12	26589279	-
Frame-shit	ENST00000340748	ENST00000291439		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000340748	ENST00000541844		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000340748	ENST00000590756		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000340748	ENST00000429941		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000340748	ENST00000444449		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000540357	ENST00000291439		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000540357	ENST00000541844		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000540357	ENST00000590756		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000540357	ENST00000429941		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000540357	ENST00000444449		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000359526	ENST00000291439		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000359526	ENST00000541844		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000359526	ENST00000590756		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000359526	ENST00000429941		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
Frame-shit	ENST00000359526	ENST00000444449		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
5UTR-3CDS	ENST00000589538	ENST00000291439		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
5UTR-3CDS	ENST00000589538	ENST00000541844		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
5UTR-3CDS	ENST00000589538	ENST00000590756		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
5UTR-3CDS	ENST00000589538	ENST00000429941		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
5UTR-3CDS	ENST00000589538	ENST00000444449		TCGA	RV	LUAD	TCGA-05-4426-01A	DNMT1	chr19	10254442	-	AP1M1	chr19	16344304	+
intron-3CDS	ENST00000462274	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3CDS	ENST00000462274	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3CDS	ENST00000462274	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3UTR	ENST00000462274	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-intron	ENST00000462274	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-intron	ENST00000462274	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000338785	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000338785	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000338785	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-3UTR	ENST00000338785	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000338785	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000338785	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000451934	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000451934	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000451934	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-3UTR	ENST00000451934	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000451934	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000451934	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000321219	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000321219	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000321219	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-3UTR	ENST00000321219	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000321219	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000321219	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000339659	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000339659	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000339659	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-3UTR	ENST00000339659	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000339659	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000339659	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000398960	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000398960	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000398960	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-3UTR	ENST00000398960	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000398960	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000398960	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000398956	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000398956	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000398956	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-3UTR	ENST00000398956	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000398956	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
5CDS-intron	ENST00000398956	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3CDS	ENST00000455387	ENST00000355666		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3CDS	ENST00000455387	ENST00000399017		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3CDS	ENST00000455387	ENST00000354749		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-3UTR	ENST00000455387	ENST00000479930		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-intron	ENST00000455387	ENST00000540756		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
intron-intron	ENST00000455387	ENST00000399010		TCGA	RV	LUAD	TCGA-67-3771-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38560796	+
Frame-shit	ENST00000526148	ENST00000403396		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000526148	ENST00000518235		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000526148	ENST00000520698		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000526148	ENST00000376931		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-intron	ENST00000526148	ENST00000523267		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-intron	ENST00000526148	ENST00000518219		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000526148	ENST00000523084		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000526148	ENST00000292586		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000526148	ENST00000521333		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
In-frame	ENST00000525681	ENST00000403396		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000525681	ENST00000518235		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000525681	ENST00000520698		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000525681	ENST00000376931		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-intron	ENST00000525681	ENST00000523267		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-intron	ENST00000525681	ENST00000518219		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000525681	ENST00000523084		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000525681	ENST00000292586		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000525681	ENST00000521333		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
Frame-shit	ENST00000339995	ENST00000403396		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
In-frame	ENST00000339995	ENST00000518235		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
In-frame	ENST00000339995	ENST00000520698		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
In-frame	ENST00000339995	ENST00000376931		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-intron	ENST00000339995	ENST00000523267		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-intron	ENST00000339995	ENST00000518219		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000339995	ENST00000523084		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000339995	ENST00000292586		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
5CDS-5UTR	ENST00000339995	ENST00000521333		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000396525	ENST00000403396		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000396525	ENST00000518235		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000396525	ENST00000520698		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000396525	ENST00000376931		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-intron	ENST00000396525	ENST00000523267		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-intron	ENST00000396525	ENST00000518219		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-5UTR	ENST00000396525	ENST00000523084		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-5UTR	ENST00000396525	ENST00000292586		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-5UTR	ENST00000396525	ENST00000521333		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000525995	ENST00000403396		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000525995	ENST00000518235		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000525995	ENST00000520698		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000525995	ENST00000376931		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-intron	ENST00000525995	ENST00000523267		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-intron	ENST00000525995	ENST00000518219		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-5UTR	ENST00000525995	ENST00000523084		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-5UTR	ENST00000525995	ENST00000292586		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-5UTR	ENST00000525995	ENST00000521333		TCGA	RV	LUAD	TCGA-78-7163-01A	EIF4G2	chr11	10818600	-	C5orf45	chr5	179280437	-
intron-3CDS	ENST00000270460	ENST00000450554		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000270460	ENST00000308924		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000270460	ENST00000590551		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000085079	ENST00000450554		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000085079	ENST00000308924		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000085079	ENST00000590551		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
Frame-shit	ENST00000411543	ENST00000450554		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
Frame-shit	ENST00000411543	ENST00000308924		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
Frame-shit	ENST00000411543	ENST00000590551		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000591743	ENST00000450554		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000591743	ENST00000308924		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
intron-3CDS	ENST00000591743	ENST00000590551		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	EPN1	chr19	56188584	+	U2AF2	chr19	56179873	+
In-frame	ENST00000284037	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000284037	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000284037	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000284037	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000284037	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000380943	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380943	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380943	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380943	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380943	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-3CDS	ENST00000416865	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000416865	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-intron	ENST00000416865	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-intron	ENST00000416865	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000416865	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000380935	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380935	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380935	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380935	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380935	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000380939	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380939	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380939	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380939	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380939	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000380936	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380936	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380936	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380936	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380936	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000380938	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380938	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380938	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000380938	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000380938	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000511297	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000511297	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000511297	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000511297	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000511297	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000506030	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000506030	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000506030	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000506030	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000506030	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000508515	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000508515	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000508515	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000508515	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000508515	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-3CDS	ENST00000503913	ENST00000375687		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000503913	ENST00000542461		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-intron	ENST00000503913	ENST00000375689		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-intron	ENST00000503913	ENST00000306058		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000503913	ENST00000470145		TCGA	RV	LUAD	TCGA-50-5944-01A	ERBB2IP	chr5	65350779	+	ASXL1	chr20	31015931	+
In-frame	ENST00000285398	ENST00000409947		TCGA	RV	LUAD	TCGA-50-6592-01A	ERCC3	chr2	128038023	-	MAP3K2	chr2	128072459	-
In-frame	ENST00000285398	ENST00000344908		TCGA	RV	LUAD	TCGA-50-6592-01A	ERCC3	chr2	128038023	-	MAP3K2	chr2	128072459	-
Frame-shit	ENST00000493187	ENST00000409947		TCGA	RV	LUAD	TCGA-50-6592-01A	ERCC3	chr2	128038023	-	MAP3K2	chr2	128072459	-
Frame-shit	ENST00000493187	ENST00000344908		TCGA	RV	LUAD	TCGA-50-6592-01A	ERCC3	chr2	128038023	-	MAP3K2	chr2	128072459	-
In-frame	ENST00000354619	ENST00000366582		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
In-frame	ENST00000354619	ENST00000366581		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
5CDS-intron	ENST00000354619	ENST00000483073		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
5CDS-intron	ENST00000354619	ENST00000366579		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
intron-3CDS	ENST00000327333	ENST00000366582		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
intron-3CDS	ENST00000327333	ENST00000366581		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
intron-intron	ENST00000327333	ENST00000483073		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
intron-intron	ENST00000327333	ENST00000366579		TCGA	RV	LUAD	TCGA-91-6831-01A	ERO1LB	chr1	236388370	-	HEATR1	chr1	236721829	-
Frame-shit	ENST00000381295	ENST00000522495		TCGA	RV	LUAD	TCGA-97-8179-01A	EXOC1	chr4	56768704	+	IDO1	chr8	39780071	+
Frame-shit	ENST00000381295	ENST00000518237		TCGA	RV	LUAD	TCGA-97-8179-01A	EXOC1	chr4	56768704	+	IDO1	chr8	39780071	+
Frame-shit	ENST00000346134	ENST00000522495		TCGA	RV	LUAD	TCGA-97-8179-01A	EXOC1	chr4	56768704	+	IDO1	chr8	39780071	+
Frame-shit	ENST00000346134	ENST00000518237		TCGA	RV	LUAD	TCGA-97-8179-01A	EXOC1	chr4	56768704	+	IDO1	chr8	39780071	+
Frame-shit	ENST00000349598	ENST00000522495		TCGA	RV	LUAD	TCGA-97-8179-01A	EXOC1	chr4	56768704	+	IDO1	chr8	39780071	+
Frame-shit	ENST00000349598	ENST00000518237		TCGA	RV	LUAD	TCGA-97-8179-01A	EXOC1	chr4	56768704	+	IDO1	chr8	39780071	+
In-frame	ENST00000243167	ENST00000442598		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAAH	chr1	46872040	+	RAD54L	chr1	46733131	+
In-frame	ENST00000243167	ENST00000371975		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAAH	chr1	46872040	+	RAD54L	chr1	46733131	+
5CDS-3UTR	ENST00000243167	ENST00000473251		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAAH	chr1	46872040	+	RAD54L	chr1	46733131	+
3UTR-3CDS	ENST00000493735	ENST00000442598		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAAH	chr1	46872040	+	RAD54L	chr1	46733131	+
3UTR-3CDS	ENST00000493735	ENST00000371975		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAAH	chr1	46872040	+	RAD54L	chr1	46733131	+
3UTR-3UTR	ENST00000493735	ENST00000473251		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAAH	chr1	46872040	+	RAD54L	chr1	46733131	+
intron-3CDS	ENST00000395719	ENST00000399497		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
intron-3CDS	ENST00000395719	ENST00000286733		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
intron-5UTR	ENST00000395719	ENST00000511606		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
intron-5UTR	ENST00000395719	ENST00000507956		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
intron-5UTR	ENST00000395719	ENST00000505594		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
intron-intron	ENST00000395719	ENST00000507187		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-3CDS	ENST00000359707	ENST00000399497		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-3CDS	ENST00000359707	ENST00000286733		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000359707	ENST00000511606		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000359707	ENST00000507956		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000359707	ENST00000505594		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-intron	ENST00000359707	ENST00000507187		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-3CDS	ENST00000357854	ENST00000399497		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-3CDS	ENST00000357854	ENST00000286733		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000357854	ENST00000511606		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000357854	ENST00000507956		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000357854	ENST00000505594		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-intron	ENST00000357854	ENST00000507187		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-3CDS	ENST00000502654	ENST00000399497		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-3CDS	ENST00000502654	ENST00000286733		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000502654	ENST00000511606		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000502654	ENST00000507956		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-5UTR	ENST00000502654	ENST00000505594		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5UTR-intron	ENST00000502654	ENST00000507187		TCGA	RV	LUAD	TCGA-44-7660-01A	G3BP2	chr4	76598392	-	NAAA	chr4	76841128	-
5CDS-intron	ENST00000392993	ENST00000340634		TCGA	RV	LUAD	TCGA-91-8499-01A	GK5	chr3	141917644	-	PAQR9	chr3	142671692	-
5CDS-intron	ENST00000544571	ENST00000340634		TCGA	RV	LUAD	TCGA-91-8499-01A	GK5	chr3	141917644	-	PAQR9	chr3	142671692	-
intron-intron	ENST00000466685	ENST00000340634		TCGA	RV	LUAD	TCGA-91-8499-01A	GK5	chr3	141917644	-	PAQR9	chr3	142671692	-
5UTR-3CDS	ENST00000355897	ENST00000337002		TCGA	RV	LUAD	TCGA-44-4112-01A	GPR160	chr3	169797685	+	SEC62	chr3	169693396	+
5UTR-3CDS	ENST00000355897	ENST00000480708		TCGA	RV	LUAD	TCGA-44-4112-01A	GPR160	chr3	169797685	+	SEC62	chr3	169693396	+
5UTR-intron	ENST00000355897	ENST00000470355		TCGA	RV	LUAD	TCGA-44-4112-01A	GPR160	chr3	169797685	+	SEC62	chr3	169693396	+
intron-3CDS	ENST00000482813	ENST00000337002		TCGA	RV	LUAD	TCGA-44-4112-01A	GPR160	chr3	169797685	+	SEC62	chr3	169693396	+
intron-3CDS	ENST00000482813	ENST00000480708		TCGA	RV	LUAD	TCGA-44-4112-01A	GPR160	chr3	169797685	+	SEC62	chr3	169693396	+
intron-intron	ENST00000482813	ENST00000470355		TCGA	RV	LUAD	TCGA-44-4112-01A	GPR160	chr3	169797685	+	SEC62	chr3	169693396	+
5CDS-intron	ENST00000454366	ENST00000381061		TCGA	RV	LUAD	TCGA-44-7660-01A	GTSE1	chr22	46719159	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000454366	ENST00000252934		TCGA	RV	LUAD	TCGA-44-7660-01A	GTSE1	chr22	46719159	+	ATXN10	chr22	46085592	+
5CDS-3UTR	ENST00000454366	ENST00000498009		TCGA	RV	LUAD	TCGA-44-7660-01A	GTSE1	chr22	46719159	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000454366	ENST00000402380		TCGA	RV	LUAD	TCGA-44-7660-01A	GTSE1	chr22	46719159	+	ATXN10	chr22	46085592	+
Frame-shit	ENST00000014930	ENST00000245663		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000014930	ENST00000395104		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000014930	ENST00000302995		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
5CDS-intron	ENST00000014930	ENST00000480766		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000540916	ENST00000245663		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000540916	ENST00000395104		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000540916	ENST00000302995		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-intron	ENST00000540916	ENST00000480766		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000536942	ENST00000245663		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000536942	ENST00000395104		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000536942	ENST00000302995		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
intron-intron	ENST00000536942	ENST00000480766		TCGA	RV	LUAD	TCGA-44-A47B-01A	HEBP1	chr12	13140086	-	ZBTB46	chr20	62378654	-
In-frame	ENST00000336648	ENST00000327783		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000389125		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000399913		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000399914		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000535441		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000389124		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000399907		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000399909		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
In-frame	ENST00000336648	ENST00000309434		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
5CDS-5UTR	ENST00000336648	ENST00000472429		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000327783		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000389125		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000399913		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000399914		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000535441		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000389124		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000399907		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000399909		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000399120	ENST00000309434		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
5CDS-5UTR	ENST00000399120	ENST00000472429		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000327783		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000389125		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000399913		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000399914		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000535441		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000389124		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000399907		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000399909		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-3CDS	ENST00000482273	ENST00000309434		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
intron-5UTR	ENST00000482273	ENST00000472429		TCGA	RV	LUAD	TCGA-50-5944-01A	HLCS	chr21	38269160	-	GRIK1	chr21	30971257	-
Frame-shit	ENST00000281156	ENST00000370577		TCGA	RV	LUAD	TCGA-55-6978-01A	KHDRBS2	chr6	62995763	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000281156	ENST00000370570		TCGA	RV	LUAD	TCGA-55-6978-01A	KHDRBS2	chr6	62995763	-	LMBRD1	chr6	70386433	-
5UTR-3CDS	ENST00000465878	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000465878	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000465878	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000465878	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
In-frame	ENST00000379655	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
In-frame	ENST00000379655	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5CDS-intron	ENST00000379655	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5CDS-intron	ENST00000379655	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
Frame-shit	ENST00000445690	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
Frame-shit	ENST00000445690	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5CDS-intron	ENST00000445690	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5CDS-intron	ENST00000445690	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000421376	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000421376	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000421376	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000421376	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
Frame-shit	ENST00000541240	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
Frame-shit	ENST00000541240	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5CDS-intron	ENST00000541240	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5CDS-intron	ENST00000541240	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000540079	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000540079	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000540079	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000540079	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000543930	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000543930	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000543930	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000543930	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000562903	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000562903	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000562903	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000562903	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000539578	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000539578	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000539578	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000539578	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000566975	ENST00000564448		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000566975	ENST00000251102		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000566975	ENST00000564654		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000566975	ENST00000311183		TCGA	RV	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57828911	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000492698	ENST00000279101		TCGA	RV	LUAD	TCGA-38-4630-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60970070	-
In-frame	ENST00000252999	ENST00000279101		TCGA	RV	LUAD	TCGA-38-4630-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60970070	-
In-frame	ENST00000370692	ENST00000279101		TCGA	RV	LUAD	TCGA-38-4630-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60970070	-
In-frame	ENST00000370677	ENST00000279101		TCGA	RV	LUAD	TCGA-38-4630-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60970070	-
Frame-shit	ENST00000306052	ENST00000294383		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000306052	ENST00000407756		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5CDS-intron	ENST00000306052	ENST00000484447		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000371454	ENST00000294383		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000371454	ENST00000407756		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5CDS-intron	ENST00000371454	ENST00000484447		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5UTR-3CDS	ENST00000465675	ENST00000294383		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5UTR-3CDS	ENST00000465675	ENST00000407756		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5UTR-intron	ENST00000465675	ENST00000484447		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000354412	ENST00000294383		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000354412	ENST00000407756		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5CDS-intron	ENST00000354412	ENST00000484447		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000347547	ENST00000294383		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
Frame-shit	ENST00000347547	ENST00000407756		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
5CDS-intron	ENST00000347547	ENST00000484447		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
intron-3CDS	ENST00000460214	ENST00000294383		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
intron-3CDS	ENST00000460214	ENST00000407756		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
intron-intron	ENST00000460214	ENST00000484447		TCGA	RV	LUAD	TCGA-55-6987-01A	LRP8	chr1	53792545	-	USP24	chr1	55562845	-
intron-3CDS	ENST00000446828	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000446828	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000446828	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000446828	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000446828	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000446828	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000424227	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000424227	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000424227	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000424227	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000424227	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000424227	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000443863	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000443863	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000443863	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000443863	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000443863	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000443863	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000535426	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000535426	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000535426	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000535426	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000535426	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000535426	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5UTR-3CDS	ENST00000265026	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5UTR-3CDS	ENST00000265026	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5UTR-3CDS	ENST00000265026	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5UTR-3CDS	ENST00000265026	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5UTR-intron	ENST00000265026	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5UTR-intron	ENST00000265026	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000448876	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000448876	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000448876	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000448876	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000448876	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000448876	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000454237	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000454237	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000454237	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000454237	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000454237	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000454237	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000438798	ENST00000437079		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000438798	ENST00000287546		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000438798	ENST00000436792		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-3CDS	ENST00000438798	ENST00000446204		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000438798	ENST00000424463		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
intron-intron	ENST00000438798	ENST00000463687		TCGA	RV	LUAD	TCGA-38-4630-01A	MAP3K13	chr3	185081156	+	VPS8	chr3	184769664	+
5CDS-5UTR	ENST00000370608	ENST00000316629		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000370608	ENST00000395284		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5CDS-3UTR	ENST00000370608	ENST00000519760		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5CDS-5UTR	ENST00000370608	ENST00000448257		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5CDS-intron	ENST00000370608	ENST00000373809		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000284027	ENST00000316629		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000284027	ENST00000395284		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
intron-3UTR	ENST00000284027	ENST00000519760		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
intron-5UTR	ENST00000284027	ENST00000448257		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
intron-intron	ENST00000284027	ENST00000373809		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5UTR-5UTR	ENST00000531325	ENST00000316629		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5UTR-5UTR	ENST00000531325	ENST00000395284		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5UTR-3UTR	ENST00000531325	ENST00000519760		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5UTR-5UTR	ENST00000531325	ENST00000448257		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
5UTR-intron	ENST00000531325	ENST00000373809		TCGA	RV	LUAD	TCGA-55-6971-01A	MCOLN2	chr1	85462479	-	CDK1	chr10	62539899	+
Frame-shit	ENST00000579761	ENST00000351904		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
Frame-shit	ENST00000579761	ENST00000245541		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579761	ENST00000578348		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579761	ENST00000582486		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-intron	ENST00000579761	ENST00000538886		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579761	ENST00000582717		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579761	ENST00000537686		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579761	ENST00000579743		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
Frame-shit	ENST00000245539	ENST00000351904		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
Frame-shit	ENST00000245539	ENST00000245541		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000245539	ENST00000578348		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000245539	ENST00000582486		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-intron	ENST00000245539	ENST00000538886		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000245539	ENST00000582717		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000245539	ENST00000537686		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000245539	ENST00000579743		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
Frame-shit	ENST00000579002	ENST00000351904		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
Frame-shit	ENST00000579002	ENST00000245541		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579002	ENST00000578348		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579002	ENST00000582486		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-intron	ENST00000579002	ENST00000538886		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579002	ENST00000582717		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579002	ENST00000537686		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5CDS-5UTR	ENST00000579002	ENST00000579743		TCGA	RV	LUAD	TCGA-91-8499-01A	MRPS7	chr17	73259588	+	GGA3	chr17	73242877	-
5UTR-5UTR	ENST00000341724	ENST00000357410		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000341724	ENST00000327619		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000341724	ENST00000497428		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000341724	ENST00000317304		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000372004	ENST00000357410		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000372004	ENST00000327619		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000372004	ENST00000497428		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000372004	ENST00000317304		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371998	ENST00000357410		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371998	ENST00000327619		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371998	ENST00000497428		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371998	ENST00000317304		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371997	ENST00000357410		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371997	ENST00000327619		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371997	ENST00000497428		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371997	ENST00000317304		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000497292	ENST00000357410		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000497292	ENST00000327619		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000497292	ENST00000497428		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000497292	ENST00000317304		TCGA	RV	LUAD	TCGA-55-7727-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000257821	ENST00000302708		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-5UTR	ENST00000257821	ENST00000378840		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-intron	ENST00000257821	ENST00000532410		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-5UTR	ENST00000323180	ENST00000302708		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-5UTR	ENST00000323180	ENST00000378840		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-intron	ENST00000323180	ENST00000532410		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-5UTR	ENST00000418153	ENST00000302708		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-5UTR	ENST00000418153	ENST00000378840		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-intron	ENST00000418153	ENST00000532410		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
intron-5UTR	ENST00000527753	ENST00000302708		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
intron-5UTR	ENST00000527753	ENST00000378840		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
intron-intron	ENST00000527753	ENST00000532410		TCGA	RV	LUAD	TCGA-91-8497-01A	PHF21A	chr11	46142486	-	ALKBH3	chr11	43904133	+
5UTR-3CDS	ENST00000482518	ENST00000341772		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
5UTR-intron	ENST00000482518	ENST00000482831		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
Frame-shit	ENST00000392054	ENST00000341772		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
5CDS-intron	ENST00000392054	ENST00000482831		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
intron-3CDS	ENST00000409462	ENST00000341772		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
intron-intron	ENST00000409462	ENST00000482831		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
In-frame	ENST00000392055	ENST00000341772		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
5CDS-intron	ENST00000392055	ENST00000482831		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
In-frame	ENST00000354069	ENST00000341772		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
5CDS-intron	ENST00000354069	ENST00000482831		TCGA	RV	LUAD	TCGA-44-5643-01A	PID1	chr2	230020534	-	DNER	chr2	230456604	-
5UTR-5UTR	ENST00000610247	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-5UTR	ENST00000610247	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-5UTR	ENST00000610247	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-5UTR	ENST00000610247	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-5UTR	ENST00000610247	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-5UTR	ENST00000610247	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-intron	ENST00000610247	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
5UTR-intron	ENST00000610247	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000452089	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000452089	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000452089	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000452089	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000452089	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000452089	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000452089	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000452089	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000448382	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000448382	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000448382	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000448382	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000448382	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000448382	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000448382	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000448382	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000444073	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000444073	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000444073	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000444073	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000444073	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000444073	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000444073	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000444073	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000609309	ENST00000405709		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000609309	ENST00000331762		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000609309	ENST00000452895		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000609309	ENST00000415362		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000609309	ENST00000447215		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000609309	ENST00000437687		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000609309	ENST00000489381		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
intron-intron	ENST00000609309	ENST00000450877		TCGA	RV	LUAD	TCGA-78-7154-01A	PILRB	chr7	99943591	+	IMMP2L	chr7	111161505	-
In-frame	ENST00000377748	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000377748	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-5UTR	ENST00000377748	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-intron	ENST00000377748	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000377732	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000377732	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-5UTR	ENST00000377732	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-intron	ENST00000377732	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000400915	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000400915	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-5UTR	ENST00000400915	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-intron	ENST00000400915	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000377740	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000377740	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-5UTR	ENST00000377740	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-intron	ENST00000377740	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-3CDS	ENST00000377737	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-3CDS	ENST00000377737	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-5UTR	ENST00000377737	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-intron	ENST00000377737	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000537245	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
In-frame	ENST00000537245	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-5UTR	ENST00000537245	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5CDS-intron	ENST00000537245	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-3CDS	ENST00000544978	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-3CDS	ENST00000544978	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-5UTR	ENST00000544978	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
5UTR-intron	ENST00000544978	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000400913	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000400913	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-5UTR	ENST00000400913	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-intron	ENST00000400913	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000340850	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000340850	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-5UTR	ENST00000340850	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-intron	ENST00000340850	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000377725	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000377725	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-5UTR	ENST00000377725	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-intron	ENST00000377725	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000377728	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000377728	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-5UTR	ENST00000377728	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-intron	ENST00000377728	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000535355	ENST00000263932		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-3CDS	ENST00000535355	ENST00000417814		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-5UTR	ENST00000535355	ENST00000413146		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
intron-intron	ENST00000535355	ENST00000479933		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12198286	+
Frame-shit	ENST00000481195	ENST00000264012		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
Frame-shit	ENST00000481195	ENST00000429102		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
5CDS-5UTR	ENST00000481195	ENST00000581171		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
5CDS-intron	ENST00000481195	ENST00000569117		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
5UTR-3CDS	ENST00000231504	ENST00000264012		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
5UTR-3CDS	ENST00000231504	ENST00000429102		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
5UTR-5UTR	ENST00000231504	ENST00000581171		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
5UTR-intron	ENST00000231504	ENST00000569117		TCGA	RV	LUAD	TCGA-05-4427-01A	PPP2CA	chr5	133561451	-	CDH3	chr16	68710288	+
In-frame	ENST00000413366	ENST00000580974		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000413366	ENST00000299954		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000413366	ENST00000335257		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
In-frame	ENST00000413366	ENST00000581322		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000583361	ENST00000580974		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000583361	ENST00000299954		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000583361	ENST00000335257		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
intron-3CDS	ENST00000583361	ENST00000581322		TCGA	RV	LUAD	TCGA-05-5429-01A	PRKCA	chr17	64492401	+	PITPNC1	chr17	65528918	+
Frame-shit	ENST00000252485	ENST00000274712		TCGA	RV	LUAD	TCGA-62-A46V-01A	PVRL2	chr19	45377735	+	ZMAT2	chr5	140083503	+
Frame-shit	ENST00000252483	ENST00000274712		TCGA	RV	LUAD	TCGA-62-A46V-01A	PVRL2	chr19	45377735	+	ZMAT2	chr5	140083503	+
5CDS-5UTR	ENST00000311481	ENST00000393223		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000311481	ENST00000346299		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000311481	ENST00000409459		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000311481	ENST00000352297		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000311481	ENST00000484818		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000527397	ENST00000393223		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000527397	ENST00000346299		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000527397	ENST00000409459		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000527397	ENST00000352297		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
5CDS-5UTR	ENST00000527397	ENST00000484818		TCGA	RV	LUAD	TCGA-55-8615-01A	RAB1B	chr11	66036164	+	MTMR2	chr11	95598840	-
Frame-shit	ENST00000344041	ENST00000283882		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000344041	ENST00000564286		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
5UTR-3CDS	ENST00000475788	ENST00000283882		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
5UTR-intron	ENST00000475788	ENST00000564286		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000405243	ENST00000283882		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000405243	ENST00000564286		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000401957	ENST00000283882		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000401957	ENST00000564286		TCGA	RV	LUAD	TCGA-44-5645-01A	RAPGEF5	chr7	22232985	-	CFDP1	chr16	75339080	-
In-frame	ENST00000432519	ENST00000250863		TCGA	RV	LUAD	TCGA-55-6972-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16640105	-
In-frame	ENST00000432519	ENST00000399444		TCGA	RV	LUAD	TCGA-55-6972-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16640105	-
Frame-shit	ENST00000334133	ENST00000250863		TCGA	RV	LUAD	TCGA-55-6972-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16640105	-
Frame-shit	ENST00000334133	ENST00000399444		TCGA	RV	LUAD	TCGA-55-6972-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000483671	ENST00000250863		TCGA	RV	LUAD	TCGA-55-6972-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000483671	ENST00000399444		TCGA	RV	LUAD	TCGA-55-6972-01A	RFTN1	chr3	16450882	-	DAZL	chr3	16640105	-
In-frame	ENST00000425013	ENST00000283928		TCGA	RV	LUAD	TCGA-69-7980-01A	RNF216	chr7	5680785	-	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000425013	ENST00000466516		TCGA	RV	LUAD	TCGA-69-7980-01A	RNF216	chr7	5680785	-	JAZF1	chr7	28031600	-
In-frame	ENST00000389902	ENST00000283928		TCGA	RV	LUAD	TCGA-69-7980-01A	RNF216	chr7	5680785	-	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000389902	ENST00000466516		TCGA	RV	LUAD	TCGA-69-7980-01A	RNF216	chr7	5680785	-	JAZF1	chr7	28031600	-
5UTR-3CDS	ENST00000469375	ENST00000283928		TCGA	RV	LUAD	TCGA-69-7980-01A	RNF216	chr7	5680785	-	JAZF1	chr7	28031600	-
5UTR-intron	ENST00000469375	ENST00000466516		TCGA	RV	LUAD	TCGA-69-7980-01A	RNF216	chr7	5680785	-	JAZF1	chr7	28031600	-
5CDS-3UTR	ENST00000372733	ENST00000371497		TCGA	RV	LUAD	TCGA-80-5608-01A	SDC4	chr20	43976965	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000372733	ENST00000603338		TCGA	RV	LUAD	TCGA-80-5608-01A	SDC4	chr20	43976965	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000372733	ENST00000329613		TCGA	RV	LUAD	TCGA-80-5608-01A	SDC4	chr20	43976965	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000537976	ENST00000371497		TCGA	RV	LUAD	TCGA-80-5608-01A	SDC4	chr20	43976965	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000537976	ENST00000603338		TCGA	RV	LUAD	TCGA-80-5608-01A	SDC4	chr20	43976965	-	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000537976	ENST00000329613		TCGA	RV	LUAD	TCGA-80-5608-01A	SDC4	chr20	43976965	-	TSHZ2	chr20	52103683	+
In-frame	ENST00000369208	ENST00000369162		TCGA	RV	LUAD	TCGA-69-7760-01A	SIM1	chr6	100868666	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000369208	ENST00000522650		TCGA	RV	LUAD	TCGA-69-7760-01A	SIM1	chr6	100868666	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000369208	ENST00000369143		TCGA	RV	LUAD	TCGA-69-7760-01A	SIM1	chr6	100868666	-	ASCC3	chr6	100988263	-
In-frame	ENST00000262901	ENST00000369162		TCGA	RV	LUAD	TCGA-69-7760-01A	SIM1	chr6	100868666	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000262901	ENST00000522650		TCGA	RV	LUAD	TCGA-69-7760-01A	SIM1	chr6	100868666	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000262901	ENST00000369143		TCGA	RV	LUAD	TCGA-69-7760-01A	SIM1	chr6	100868666	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000504570	ENST00000322776		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000504570	ENST00000532303		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000504570	ENST00000529927		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000504570	ENST00000415352		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000504570	ENST00000526169		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000382051	ENST00000322776		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000382051	ENST00000532303		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000382051	ENST00000529927		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000382051	ENST00000415352		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000382051	ENST00000526169		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000503434	ENST00000322776		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000503434	ENST00000532303		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000503434	ENST00000529927		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000503434	ENST00000415352		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000503434	ENST00000526169		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000510033	ENST00000322776		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000510033	ENST00000532303		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000510033	ENST00000529927		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000510033	ENST00000415352		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000510033	ENST00000526169		TCGA	RV	LUAD	TCGA-05-4405-01A	SLC34A2	chr4	25680370	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000219343	ENST00000575270		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000219343	ENST00000349223		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000219343	ENST00000329524		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000219343	ENST00000346183		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000219343	ENST00000535127		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000566454	ENST00000575270		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-intron	ENST00000566454	ENST00000349223		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000566454	ENST00000329524		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000566454	ENST00000346183		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
5CDS-3UTR	ENST00000566454	ENST00000535127		TCGA	RV	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68260253	+
In-frame	ENST00000566228	ENST00000053243		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
5CDS-intron	ENST00000566228	ENST00000396495		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
In-frame	ENST00000323433	ENST00000053243		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
5CDS-intron	ENST00000323433	ENST00000396495		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
In-frame	ENST00000306030	ENST00000053243		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
5CDS-intron	ENST00000306030	ENST00000396495		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
intron-3CDS	ENST00000568359	ENST00000053243		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
intron-intron	ENST00000568359	ENST00000396495		TCGA	RV	LUAD	TCGA-69-7979-01A	SNX29	chr16	12172772	+	TNFRSF17	chr16	12060052	+
Frame-shit	ENST00000394945	ENST00000378004		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
Frame-shit	ENST00000394945	ENST00000274498		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
5CDS-intron	ENST00000394945	ENST00000486650		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
Frame-shit	ENST00000282223	ENST00000378004		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
Frame-shit	ENST00000282223	ENST00000274498		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
5CDS-intron	ENST00000282223	ENST00000486650		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
intron-3CDS	ENST00000509978	ENST00000378004		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
intron-3CDS	ENST00000509978	ENST00000274498		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
intron-intron	ENST00000509978	ENST00000486650		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SPOCK1	chr5	136834062	-	ARHGAP26	chr5	142500553	+
Frame-shit	ENST00000361204	ENST00000396231		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
Frame-shit	ENST00000361204	ENST00000262726		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
5CDS-intron	ENST00000361204	ENST00000358439		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
5CDS-intron	ENST00000361204	ENST00000356087		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
5CDS-5UTR	ENST00000361204	ENST00000461800		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
intron-3CDS	ENST00000491541	ENST00000396231		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
intron-3CDS	ENST00000491541	ENST00000262726		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
intron-intron	ENST00000491541	ENST00000358439		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
intron-intron	ENST00000491541	ENST00000356087		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
intron-5UTR	ENST00000491541	ENST00000461800		TCGA	RV	LUAD	TCGA-99-AA5R-01A	SREBF2	chr22	42276996	+	EFCAB6	chr22	43950976	-
5CDS-5UTR	ENST00000393446	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393446	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393446	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393446	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393446	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000265437	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000265437	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000265437	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000265437	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000265437	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393451	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393451	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393451	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393451	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393451	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393449	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393449	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393449	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393449	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393449	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000323984	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000323984	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000323984	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000323984	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000323984	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000432298	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000432298	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000422922	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000422922	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000487459	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000487459	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000487459	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000487459	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000487459	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393443	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393443	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393443	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393443	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393443	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393447	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393447	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393447	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393447	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393447	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393444	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393444	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393444	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393444	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393444	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000465133	ENST00000397752		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000465133	ENST00000318493		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000465133	ENST00000436117		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000465133	ENST00000495962		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000465133	ENST00000539704		TCGA	RV	LUAD	TCGA-38-4628-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
Frame-shit	ENST00000218089	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000218089	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000218089	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000218089	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000218089	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000218089	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000218089	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000218089	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-3CDS	ENST00000469481	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-3CDS	ENST00000469481	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-3CDS	ENST00000469481	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-3CDS	ENST00000469481	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-3CDS	ENST00000469481	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-intron	ENST00000469481	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-intron	ENST00000469481	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-intron	ENST00000469481	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000354548	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000354548	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000354548	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000354548	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000354548	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000354548	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000354548	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000354548	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371160	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371160	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371160	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371160	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371160	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371160	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371160	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371160	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371157	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371157	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371157	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371157	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371157	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371157	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371157	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371157	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371145	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371145	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371145	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371145	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371145	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371145	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371145	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371145	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371144	ENST00000264357		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371144	ENST00000542149		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371144	ENST00000371251		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371144	ENST00000371256		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
Frame-shit	ENST00000371144	ENST00000541091		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371144	ENST00000371266		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371144	ENST00000371264		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
5CDS-intron	ENST00000371144	ENST00000479118		TCGA	RV	LUAD	TCGA-55-7913-01B	STAG2	chrX	123164975	+	GRIA3	chrX	122459877	+
intron-3CDS	ENST00000300737	ENST00000324932		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000300737	ENST00000359171		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000300737	ENST00000355260		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000300737	ENST00000397004		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000300737	ENST00000397007		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-intron	ENST00000300737	ENST00000488828		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527651	ENST00000324932		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527651	ENST00000359171		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527651	ENST00000355260		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527651	ENST00000397004		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527651	ENST00000397007		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-intron	ENST00000527651	ENST00000488828		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527484	ENST00000324932		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527484	ENST00000359171		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527484	ENST00000355260		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527484	ENST00000397004		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000527484	ENST00000397007		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-intron	ENST00000527484	ENST00000488828		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000533977	ENST00000324932		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000533977	ENST00000359171		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000533977	ENST00000355260		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000533977	ENST00000397004		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-3CDS	ENST00000533977	ENST00000397007		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
intron-intron	ENST00000533977	ENST00000488828		TCGA	RV	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3968954	+	NUP98	chr11	3765879	-
5UTR-5UTR	ENST00000454300	ENST00000339562		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-5UTR	ENST00000454300	ENST00000426264		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-5UTR	ENST00000454300	ENST00000409572		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-intron	ENST00000454300	ENST00000539077		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-intron	ENST00000454300	ENST00000409108		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-intron	ENST00000454300	ENST00000429376		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-5UTR	ENST00000263635	ENST00000339562		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-5UTR	ENST00000263635	ENST00000426264		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-5UTR	ENST00000263635	ENST00000409572		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-intron	ENST00000263635	ENST00000539077		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-intron	ENST00000263635	ENST00000409108		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5UTR-intron	ENST00000263635	ENST00000429376		TCGA	RV	LUAD	TCGA-78-7536-01A	TANC1	chr2	159857701	+	NR4A2	chr2	157187303	-
5CDS-5UTR	ENST00000337137	ENST00000543252		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000337137	ENST00000344138		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000337137	ENST00000540310		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000337137	ENST00000478445		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000337137	ENST00000544756		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000337137	ENST00000399090		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000337137	ENST00000407075		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000380995	ENST00000543252		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000380995	ENST00000344138		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000380995	ENST00000540310		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000380995	ENST00000478445		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000380995	ENST00000544756		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000380995	ENST00000399090		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000380995	ENST00000407075		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000407381	ENST00000543252		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000407381	ENST00000344138		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000407381	ENST00000540310		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000407381	ENST00000478445		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000407381	ENST00000544756		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000407381	ENST00000399090		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000407381	ENST00000407075		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000355704	ENST00000543252		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000355704	ENST00000344138		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000355704	ENST00000540310		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000355704	ENST00000478445		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000355704	ENST00000544756		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000355704	ENST00000399090		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000355704	ENST00000407075		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000472791	ENST00000543252		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000472791	ENST00000344138		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000472791	ENST00000540310		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000472791	ENST00000478445		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000472791	ENST00000544756		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000472791	ENST00000399090		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000472791	ENST00000407075		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000406733	ENST00000543252		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000406733	ENST00000344138		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000406733	ENST00000540310		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000406733	ENST00000478445		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000406733	ENST00000544756		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-intron	ENST00000406733	ENST00000399090		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
5CDS-5UTR	ENST00000406733	ENST00000407075		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	TBC1D22A	chr22	47193517	+	GRAP2	chr22	40343097	+
In-frame	ENST00000337137	ENST00000342894		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000337137	ENST00000538017		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
5CDS-3UTR	ENST00000337137	ENST00000466226		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000380995	ENST00000342894		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000380995	ENST00000538017		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
5CDS-3UTR	ENST00000380995	ENST00000466226		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000407381	ENST00000342894		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000407381	ENST00000538017		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
5CDS-3UTR	ENST00000407381	ENST00000466226		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000355704	ENST00000342894		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000355704	ENST00000538017		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
5CDS-3UTR	ENST00000355704	ENST00000466226		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000472791	ENST00000342894		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000472791	ENST00000538017		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
intron-3UTR	ENST00000472791	ENST00000466226		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000406733	ENST00000342894		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
In-frame	ENST00000406733	ENST00000538017		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
5CDS-3UTR	ENST00000406733	ENST00000466226		TCGA	RV	LUAD	TCGA-44-7660-01A	TBC1D22A	chr22	47290742	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000414318	ENST00000402198		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000414318	ENST00000402466		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000414318	ENST00000406341		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000414318	ENST00000407969		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000414318	ENST00000302463		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-intron	ENST00000414318	ENST00000488236		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000253692	ENST00000402198		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000253692	ENST00000402466		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000253692	ENST00000406341		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000253692	ENST00000407969		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000253692	ENST00000302463		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
5CDS-intron	ENST00000253692	ENST00000488236		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000429383	ENST00000402198		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000429383	ENST00000402466		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000429383	ENST00000406341		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000429383	ENST00000407969		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000429383	ENST00000302463		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
5CDS-intron	ENST00000429383	ENST00000488236		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000446818	ENST00000402198		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000446818	ENST00000402466		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000446818	ENST00000406341		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000446818	ENST00000407969		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000446818	ENST00000302463		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
5CDS-intron	ENST00000446818	ENST00000488236		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000429924	ENST00000402198		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000429924	ENST00000402466		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000429924	ENST00000406341		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000429924	ENST00000407969		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-3CDS	ENST00000429924	ENST00000302463		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
intron-intron	ENST00000429924	ENST00000488236		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	TBC1D5	chr3	17469942	-	SETD5	chr3	9477412	+
Frame-shit	ENST00000319172	ENST00000415149		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
Frame-shit	ENST00000319172	ENST00000402543		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
Frame-shit	ENST00000319172	ENST00000325805		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
Frame-shit	ENST00000319172	ENST00000416476		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
Frame-shit	ENST00000319172	ENST00000406780		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5CDS-intron	ENST00000319172	ENST00000473542		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5UTR-3CDS	ENST00000486159	ENST00000415149		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5UTR-3CDS	ENST00000486159	ENST00000402543		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5UTR-3CDS	ENST00000486159	ENST00000325805		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5UTR-3CDS	ENST00000486159	ENST00000416476		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5UTR-3CDS	ENST00000486159	ENST00000406780		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5UTR-intron	ENST00000486159	ENST00000473542		TCGA	RV	LUAD	TCGA-99-8032-01A	TMEM39A	chr3	119180809	-	BBX	chr3	107451803	+
5CDS-intron	ENST00000301923	ENST00000585748		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000301923	ENST00000326873		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000402203	ENST00000585748		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000402203	ENST00000326873		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000454349	ENST00000585748		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000454349	ENST00000326873		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000335727	ENST00000585748		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000335727	ENST00000326873		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
intron-intron	ENST00000497559	ENST00000585748		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
intron-intron	ENST00000497559	ENST00000326873		TCGA	RV	LUAD	TCGA-99-8033-01A	TNRC6B	chr22	40697337	+	STK11	chr19	1222984	+
In-frame	ENST00000291574	ENST00000327783		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000389125		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000399913		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000399914		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000535441		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000389124		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000399907		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000399909		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000291574	ENST00000309434		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
5CDS-5UTR	ENST00000291574	ENST00000472429		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000327783		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000389125		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000399913		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000399914		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000535441		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000389124		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000399907		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000399909		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000380221	ENST00000309434		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
5CDS-5UTR	ENST00000380221	ENST00000472429		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000327783		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000389125		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000399913		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000399914		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000535441		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000389124		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000399907		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000399909		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-3CDS	ENST00000483973	ENST00000309434		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
intron-5UTR	ENST00000483973	ENST00000472429		TCGA	RV	LUAD	TCGA-69-8453-01A	TRAPPC10	chr21	45432441	+	GRIK1	chr21	31066382	-
In-frame	ENST00000351937	ENST00000380483		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
In-frame	ENST00000351937	ENST00000380485		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
Frame-shit	ENST00000351937	ENST00000380488		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
Frame-shit	ENST00000351937	ENST00000546332		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
5CDS-5UTR	ENST00000351937	ENST00000473862		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
In-frame	ENST00000315073	ENST00000380483		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
In-frame	ENST00000315073	ENST00000380485		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
Frame-shit	ENST00000315073	ENST00000380488		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
Frame-shit	ENST00000315073	ENST00000546332		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
5CDS-5UTR	ENST00000315073	ENST00000473862		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
intron-3CDS	ENST00000510072	ENST00000380483		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
intron-3CDS	ENST00000510072	ENST00000380485		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
intron-3CDS	ENST00000510072	ENST00000380488		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
intron-3CDS	ENST00000510072	ENST00000546332		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
intron-5UTR	ENST00000510072	ENST00000473862		TCGA	RV	LUAD	TCGA-78-7146-01A	TRIM41	chr5	180651812	+	ASB9	chrX	15277067	-
Frame-shit	ENST00000283943	ENST00000295190		TCGA	RV	LUAD	TCGA-95-A4VP-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000389045	ENST00000295190		TCGA	RV	LUAD	TCGA-95-A4VP-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000389044	ENST00000295190		TCGA	RV	LUAD	TCGA-95-A4VP-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000543084	ENST00000295190		TCGA	RV	LUAD	TCGA-95-A4VP-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000409677	ENST00000295190		TCGA	RV	LUAD	TCGA-95-A4VP-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
In-frame	ENST00000333628	ENST00000436008		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
In-frame	ENST00000333628	ENST00000406686		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
In-frame	ENST00000333628	ENST00000380302		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
In-frame	ENST00000333628	ENST00000490273		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
Frame-shit	ENST00000333628	ENST00000380298		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5CDS-5UTR	ENST00000333628	ENST00000433689		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5UTR-3CDS	ENST00000489942	ENST00000436008		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5UTR-3CDS	ENST00000489942	ENST00000406686		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5UTR-3CDS	ENST00000489942	ENST00000380302		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5UTR-3CDS	ENST00000489942	ENST00000490273		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5UTR-3CDS	ENST00000489942	ENST00000380298		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
5UTR-5UTR	ENST00000489942	ENST00000433689		TCGA	RV	LUAD	TCGA-55-A493-01A	TUBB2A	chr6	3155859	-	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000346141	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000346141	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000346141	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000346141	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000346141	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000346141	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000346141	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000346141	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000346141	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000346141	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
In-frame	ENST00000325752	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000325752	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000325752	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000325752	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000325752	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000325752	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000325752	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000325752	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000325752	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000325752	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
In-frame	ENST00000340993	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000340993	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000340993	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000340993	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000340993	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000340993	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000340993	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000340993	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000340993	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000340993	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
In-frame	ENST00000394239	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000394239	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000394239	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000394239	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000394239	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000394239	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000394239	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000394239	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000394239	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000394239	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
Frame-shit	ENST00000592426	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000592426	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000592426	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000592426	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000592426	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000592426	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000592426	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000592426	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000592426	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000592426	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
Frame-shit	ENST00000376094	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000376094	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000376094	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000376094	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000376094	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000376094	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-intron	ENST00000376094	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000376094	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000376094	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000376094	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-3CDS	ENST00000539018	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000539018	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000539018	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000539018	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000539018	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000539018	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-intron	ENST00000539018	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000539018	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000539018	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
intron-5UTR	ENST00000539018	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-3CDS	ENST00000591611	ENST00000570371		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-intron	ENST00000591611	ENST00000574744		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-intron	ENST00000591611	ENST00000575882		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-intron	ENST00000591611	ENST00000445275		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-5UTR	ENST00000591611	ENST00000348161		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-5UTR	ENST00000591611	ENST00000572405		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-intron	ENST00000591611	ENST00000572158		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-5UTR	ENST00000591611	ENST00000540336		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-5UTR	ENST00000591611	ENST00000536554		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5UTR-5UTR	ENST00000591611	ENST00000575333		TCGA	RV	LUAD	TCGA-55-6969-01A	TUBD1	chr17	57963444	-	TOM1L1	chr17	52990027	+
5CDS-5UTR	ENST00000272638	ENST00000409478		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000329971		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000264160		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000410054		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000409606		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
5CDS-intron	ENST00000272638	ENST00000443537		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000409478		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000329971		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000264160		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000410054		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000409606		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
3UTR-intron	ENST00000490163	ENST00000443537		TCGA	RV	LUAD	TCGA-44-6778-01A	UBXN4	chr2	136537955	+	R3HDM1	chr2	136360070	+
5CDS-intron	ENST00000293218	ENST00000509434		TCGA	RV	LUAD	TCGA-86-7955-01A	UNK	chr17	73781065	+	NAF1	chr4	164085543	-
5CDS-intron	ENST00000293218	ENST00000422287		TCGA	RV	LUAD	TCGA-86-7955-01A	UNK	chr17	73781065	+	NAF1	chr4	164085543	-
5CDS-intron	ENST00000293218	ENST00000274054		TCGA	RV	LUAD	TCGA-86-7955-01A	UNK	chr17	73781065	+	NAF1	chr4	164085543	-
5CDS-intron	ENST00000589666	ENST00000509434		TCGA	RV	LUAD	TCGA-86-7955-01A	UNK	chr17	73781065	+	NAF1	chr4	164085543	-
5CDS-intron	ENST00000589666	ENST00000422287		TCGA	RV	LUAD	TCGA-86-7955-01A	UNK	chr17	73781065	+	NAF1	chr4	164085543	-
5CDS-intron	ENST00000589666	ENST00000274054		TCGA	RV	LUAD	TCGA-86-7955-01A	UNK	chr17	73781065	+	NAF1	chr4	164085543	-
5CDS-3UTR	ENST00000262238	ENST00000557165		TCGA	RV	LUAD	TCGA-44-A47G-01A	YY1	chr14	100706260	+	CCNK	chr14	99968544	+
5CDS-3UTR	ENST00000262238	ENST00000389879		TCGA	RV	LUAD	TCGA-44-A47G-01A	YY1	chr14	100706260	+	CCNK	chr14	99968544	+
5CDS-3UTR	ENST00000262238	ENST00000555049		TCGA	RV	LUAD	TCGA-44-A47G-01A	YY1	chr14	100706260	+	CCNK	chr14	99968544	+
Frame-shit	ENST00000335815	ENST00000264930		TCGA	RV	LUAD	TCGA-95-A4VK-01A	ZNF354A	chr5	178152377	-	SLC12A7	chr5	1089243	-
5CDS-5UTR	ENST00000292205	ENST00000368232		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000292205	ENST00000438976		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000292205	ENST00000497287		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000292205	ENST00000334588		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000368474	ENST00000368232		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000368474	ENST00000438976		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000368474	ENST00000497287		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000368474	ENST00000334588		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000368471	ENST00000368232		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000368471	ENST00000438976		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-intron	ENST00000368471	ENST00000497287		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5CDS-5UTR	ENST00000368471	ENST00000334588		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
intron-5UTR	ENST00000471068	ENST00000368232		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
intron-intron	ENST00000471068	ENST00000438976		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
intron-intron	ENST00000471068	ENST00000497287		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
intron-5UTR	ENST00000471068	ENST00000334588		TCGA	RV	LUAD	TCGA-78-7146-01A	ADAR	chr1	154573517	-	GPATCH4	chr1	156568896	-
5UTR-3CDS	ENST00000383440	ENST00000580170		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000383440	ENST00000332175		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000383440	ENST00000400060		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000383440	ENST00000400053		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000383440	ENST00000444013		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-intron	ENST00000383440	ENST00000578571		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000262126	ENST00000580170		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000262126	ENST00000332175		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000262126	ENST00000400060		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000262126	ENST00000400053		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000262126	ENST00000444013		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
5UTR-intron	ENST00000262126	ENST00000578571		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
3UTR-3CDS	ENST00000540578	ENST00000580170		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
3UTR-3CDS	ENST00000540578	ENST00000332175		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
3UTR-3CDS	ENST00000540578	ENST00000400060		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
3UTR-3CDS	ENST00000540578	ENST00000400053		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
3UTR-3CDS	ENST00000540578	ENST00000444013		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
3UTR-intron	ENST00000540578	ENST00000578571		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000400020	ENST00000580170		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000400020	ENST00000332175		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000400020	ENST00000400060		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000400020	ENST00000400053		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000400020	ENST00000444013		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
intron-intron	ENST00000400020	ENST00000578571		TCGA	RV	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8394474	+
Frame-shit	ENST00000420843	ENST00000376292		TCGA	RV	LUAD	TCGA-44-7660-01A	ARRB1	chr11	75062632	-	KLHL35	chr11	75137683	-
Frame-shit	ENST00000420843	ENST00000539798		TCGA	RV	LUAD	TCGA-44-7660-01A	ARRB1	chr11	75062632	-	KLHL35	chr11	75137683	-
Frame-shit	ENST00000393505	ENST00000376292		TCGA	RV	LUAD	TCGA-44-7660-01A	ARRB1	chr11	75062632	-	KLHL35	chr11	75137683	-
Frame-shit	ENST00000393505	ENST00000539798		TCGA	RV	LUAD	TCGA-44-7660-01A	ARRB1	chr11	75062632	-	KLHL35	chr11	75137683	-
Frame-shit	ENST00000360025	ENST00000376292		TCGA	RV	LUAD	TCGA-44-7660-01A	ARRB1	chr11	75062632	-	KLHL35	chr11	75137683	-
Frame-shit	ENST00000360025	ENST00000539798		TCGA	RV	LUAD	TCGA-44-7660-01A	ARRB1	chr11	75062632	-	KLHL35	chr11	75137683	-
5CDS-5UTR	ENST00000367942	ENST00000271348		TCGA	RV	LUAD	TCGA-78-7146-01A	ATF6	chr1	161751789	+	GJA5	chr1	147231379	-
5CDS-5UTR	ENST00000367942	ENST00000369237		TCGA	RV	LUAD	TCGA-78-7146-01A	ATF6	chr1	161751789	+	GJA5	chr1	147231379	-
intron-5UTR	ENST00000476437	ENST00000271348		TCGA	RV	LUAD	TCGA-78-7146-01A	ATF6	chr1	161751789	+	GJA5	chr1	147231379	-
intron-5UTR	ENST00000476437	ENST00000369237		TCGA	RV	LUAD	TCGA-78-7146-01A	ATF6	chr1	161751789	+	GJA5	chr1	147231379	-
Frame-shit	ENST00000306279	ENST00000263863		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
Frame-shit	ENST00000306279	ENST00000524600		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000306279	ENST00000533041		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000306279	ENST00000409696		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
3UTR-3CDS	ENST00000463422	ENST00000263863		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
3UTR-3CDS	ENST00000463422	ENST00000524600		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
3UTR-3UTR	ENST00000463422	ENST00000533041		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
3UTR-3UTR	ENST00000463422	ENST00000409696		TCGA	RV	LUAD	TCGA-69-7978-01A	ATOH8	chr2	85991305	+	GNLY	chr2	85922443	+
Frame-shit	ENST00000295055	ENST00000324589		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000295055	ENST00000349752		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000295055	ENST00000406653		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000295055	ENST00000356174		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000295055	ENST00000420311		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5CDS-5UTR	ENST00000295055	ENST00000486564		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000534090	ENST00000324589		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000534090	ENST00000349752		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000534090	ENST00000406653		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000534090	ENST00000356174		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000534090	ENST00000420311		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5CDS-5UTR	ENST00000534090	ENST00000486564		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5UTR-3CDS	ENST00000465960	ENST00000324589		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5UTR-3CDS	ENST00000465960	ENST00000349752		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5UTR-3CDS	ENST00000465960	ENST00000406653		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5UTR-3CDS	ENST00000465960	ENST00000356174		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5UTR-3CDS	ENST00000465960	ENST00000420311		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
5UTR-5UTR	ENST00000465960	ENST00000486564		TCGA	RV	LUAD	TCGA-49-4514-01A	CAPN13	chr2	31009994	-	GALNT14	chr2	31155060	-
Frame-shit	ENST00000269397	ENST00000376736		TCGA	RV	LUAD	TCGA-97-A4M1-01A	CBX4	chr17	77811636	-	RFK	chr9	79003572	-
5CDS-5UTR	ENST00000269397	ENST00000479197		TCGA	RV	LUAD	TCGA-97-A4M1-01A	CBX4	chr17	77811636	-	RFK	chr9	79003572	-
Frame-shit	ENST00000448310	ENST00000376736		TCGA	RV	LUAD	TCGA-97-A4M1-01A	CBX4	chr17	77811636	-	RFK	chr9	79003572	-
5CDS-5UTR	ENST00000448310	ENST00000479197		TCGA	RV	LUAD	TCGA-97-A4M1-01A	CBX4	chr17	77811636	-	RFK	chr9	79003572	-
intron-intron	ENST00000548898	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000548898	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000548898	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000552067	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000552067	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000552067	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000420846	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000420846	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000420846	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000548160	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000548160	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000548160	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000546939	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000546939	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000546939	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552692	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552692	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552692	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000549117	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000549117	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000549117	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000257857	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000257857	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000257857	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552754	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552754	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000552754	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000550776	ENST00000233057		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000550776	ENST00000395127		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000550776	ENST00000405334		TCGA	RV	LUAD	TCGA-86-7954-01A	CD63	chr12	56119232	-	EIF2AK2	chr2	37342384	-
intron-3CDS	ENST00000395290	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000395290	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000395290	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000395290	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000358597	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000358597	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000358597	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000358597	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000395292	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000395292	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000395292	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000395292	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-3CDS	ENST00000310513	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-3CDS	ENST00000310513	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-3CDS	ENST00000310513	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-intron	ENST00000310513	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000361904	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000361904	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000361904	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000361904	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000539455	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000539455	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000539455	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000539455	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-3CDS	ENST00000531165	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-3CDS	ENST00000531165	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-3CDS	ENST00000531165	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
5UTR-intron	ENST00000531165	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000532048	ENST00000400569		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000532048	ENST00000356443		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-3CDS	ENST00000532048	ENST00000261606		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000532048	ENST00000582016		TCGA	RV	LUAD	TCGA-55-1592-01A	CELF1	chr11	47574544	-	MYOM1	chr18	3131494	-
intron-intron	ENST00000466411	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
intron-intron	ENST00000466411	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
intron-intron	ENST00000466411	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000435050	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000435050	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000435050	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000431918	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000431918	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000431918	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000340958	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000340958	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000340958	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7148-01A	CLDN4	chr7	73247014	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000393043	ENST00000393038		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000393043	ENST00000537860		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
In-frame	ENST00000393043	ENST00000409433		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
In-frame	ENST00000393043	ENST00000470557		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000393043	ENST00000579915		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000269122	ENST00000393038		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000269122	ENST00000537860		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
In-frame	ENST00000269122	ENST00000409433		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
In-frame	ENST00000269122	ENST00000470557		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000269122	ENST00000579915		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000579456	ENST00000393038		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
Frame-shit	ENST00000579456	ENST00000537860		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
In-frame	ENST00000579456	ENST00000409433		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
In-frame	ENST00000579456	ENST00000470557		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000579456	ENST00000579915		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000579815	ENST00000393038		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000579815	ENST00000537860		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000579815	ENST00000409433		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000579815	ENST00000470557		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
intron-intron	ENST00000579815	ENST00000579915		TCGA	RV	LUAD	TCGA-69-7765-01A	CLTC	chr17	57697534	+	PTRH2	chr17	57775339	-
5CDS-5UTR	ENST00000225428	ENST00000504681		TCGA	RV	LUAD	TCGA-50-5066-01A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000225428	ENST00000393354		TCGA	RV	LUAD	TCGA-50-5066-01A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000225428	ENST00000300404		TCGA	RV	LUAD	TCGA-50-5066-01A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5UTR-5UTR	ENST00000536127	ENST00000504681		TCGA	RV	LUAD	TCGA-50-5066-01A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5UTR-5UTR	ENST00000536127	ENST00000393354		TCGA	RV	LUAD	TCGA-50-5066-01A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5UTR-5UTR	ENST00000536127	ENST00000300404		TCGA	RV	LUAD	TCGA-50-5066-01A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5CDS-intron	ENST00000373913	ENST00000262865		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000373913	ENST00000489102		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000373913	ENST00000451435		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000401952	ENST00000262865		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000401952	ENST00000489102		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000401952	ENST00000451435		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000373907	ENST00000262865		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000373907	ENST00000489102		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000373907	ENST00000451435		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000339266	ENST00000262865		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000339266	ENST00000489102		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000339266	ENST00000451435		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
3UTR-intron	ENST00000475894	ENST00000262865		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
3UTR-intron	ENST00000475894	ENST00000489102		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
3UTR-intron	ENST00000475894	ENST00000451435		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000340491	ENST00000262865		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000340491	ENST00000489102		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5CDS-intron	ENST00000340491	ENST00000451435		TCGA	RV	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917429	+
5UTR-5UTR	ENST00000438306	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
5UTR-5UTR	ENST00000438306	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
5UTR-5UTR	ENST00000438306	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
5CDS-5UTR	ENST00000445716	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
5CDS-5UTR	ENST00000445716	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
5CDS-5UTR	ENST00000445716	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
intron-5UTR	ENST00000427372	ENST00000265734		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
intron-5UTR	ENST00000427372	ENST00000424848		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
intron-5UTR	ENST00000427372	ENST00000491250		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM133B	chr7	92219582	-	CDK6	chr7	92463004	-
Frame-shit	ENST00000595437	ENST00000251127		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000595437	ENST00000470333		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000595437	ENST00000376196		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-intron	ENST00000595437	ENST00000376200		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
Frame-shit	ENST00000376586	ENST00000251127		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000376586	ENST00000470333		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000376586	ENST00000376196		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-intron	ENST00000376586	ENST00000376200		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
Frame-shit	ENST00000319562	ENST00000251127		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000319562	ENST00000470333		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000319562	ENST00000376196		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-intron	ENST00000319562	ENST00000376200		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
Frame-shit	ENST00000376581	ENST00000251127		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000376581	ENST00000470333		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-5UTR	ENST00000376581	ENST00000376196		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5CDS-intron	ENST00000376581	ENST00000376200		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
intron-3CDS	ENST00000593990	ENST00000251127		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
intron-5UTR	ENST00000593990	ENST00000470333		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
intron-5UTR	ENST00000593990	ENST00000376196		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
intron-intron	ENST00000593990	ENST00000376200		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98865667	+	NALCN	chr13	101944717	-
5UTR-3CDS	ENST00000299293	ENST00000462284		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000356290		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000540827		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000258149		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000428863		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000393412		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000258148		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000544561		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000393410		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000393413		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000517852		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000545204		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000350057		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000360430		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000299293	ENST00000299252		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000299293	ENST00000348801		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000299293	ENST00000478070		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000299293	ENST00000544125		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-3CDS	ENST00000549921	ENST00000462284		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000356290		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000540827		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000258149		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000428863		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000393412		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000258148		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000544561		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000393410		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000393413		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000517852		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000545204		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000350057		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000360430		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000549921	ENST00000299252		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000549921	ENST00000348801		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000549921	ENST00000478070		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000549921	ENST00000544125		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-3CDS	ENST00000550389	ENST00000462284		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000356290		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000540827		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000258149		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000428863		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000393412		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000258148		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000544561		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000393410		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000393413		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000517852		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000545204		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000350057		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000360430		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-5UTR	ENST00000550389	ENST00000299252		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-intron	ENST00000550389	ENST00000348801		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-intron	ENST00000550389	ENST00000478070		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
intron-intron	ENST00000550389	ENST00000544125		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-3CDS	ENST00000397997	ENST00000462284		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000356290		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000540827		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000258149		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000428863		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000393412		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000258148		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000544561		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000393410		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000393413		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000517852		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000545204		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000350057		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000360430		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-5UTR	ENST00000397997	ENST00000299252		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000397997	ENST00000348801		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000397997	ENST00000478070		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
5UTR-intron	ENST00000397997	ENST00000544125		TCGA	RV	LUAD	TCGA-49-4501-01A	FRS2	chr12	69925836	+	MDM2	chr12	69202988	+
In-frame	ENST00000471389	ENST00000262133		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000471389	ENST00000379935		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000471389	ENST00000544545		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
5UTR-3CDS	ENST00000394647	ENST00000262133		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
5UTR-intron	ENST00000394647	ENST00000379935		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
5UTR-intron	ENST00000394647	ENST00000544545		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-3CDS	ENST00000431610	ENST00000262133		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000431610	ENST00000379935		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000431610	ENST00000544545		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-3CDS	ENST00000460382	ENST00000262133		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000460382	ENST00000379935		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000460382	ENST00000544545		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-3CDS	ENST00000463855	ENST00000262133		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000463855	ENST00000379935		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000463855	ENST00000544545		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-3CDS	ENST00000472835	ENST00000262133		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000472835	ENST00000379935		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
intron-intron	ENST00000472835	ENST00000544545		TCGA	RV	LUAD	TCGA-95-8039-01A	FTO	chr16	53738141	+	RBL2	chr16	53472928	+
5CDS-5UTR	ENST00000307602	ENST00000456845		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
5CDS-5UTR	ENST00000307602	ENST00000412303		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
5CDS-intron	ENST00000307602	ENST00000456397		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
5CDS-5UTR	ENST00000307602	ENST00000397070		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
5CDS-intron	ENST00000307602	ENST00000522434		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
intron-5UTR	ENST00000524839	ENST00000456845		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
intron-5UTR	ENST00000524839	ENST00000412303		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
intron-intron	ENST00000524839	ENST00000456397		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
intron-5UTR	ENST00000524839	ENST00000397070		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
intron-intron	ENST00000524839	ENST00000522434		TCGA	RV	LUAD	TCGA-50-5933-01A	HOOK3	chr8	42761401	+	TM2D2	chr8	38853212	-
In-frame	ENST00000341776	ENST00000278616		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
In-frame	ENST00000341776	ENST00000452508		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
5CDS-intron	ENST00000341776	ENST00000525178		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-3CDS	ENST00000397311	ENST00000278616		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-3CDS	ENST00000397311	ENST00000452508		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-intron	ENST00000397311	ENST00000525178		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-3CDS	ENST00000541660	ENST00000278616		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-3CDS	ENST00000541660	ENST00000452508		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-intron	ENST00000541660	ENST00000525178		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-3CDS	ENST00000474854	ENST00000278616		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-3CDS	ENST00000474854	ENST00000452508		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
intron-intron	ENST00000474854	ENST00000525178		TCGA	RV	LUAD	TCGA-50-6594-01A	JARID2	chr6	15246815	+	ATM	chr11	108213949	+
5CDS-intron	ENST00000395309	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395309	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395309	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395309	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395309	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395309	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395309	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000413890	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000438792	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395314	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395308	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000395311	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
5CDS-intron	ENST00000416613	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000554507	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000591462		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000252455		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000412601		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000592741		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000587327		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000589838		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
intron-intron	ENST00000555573	ENST00000591510		TCGA	RV	LUAD	TCGA-95-A4VN-01A	KTN1	chr14	56104565	+	PRKCSH	chr19	11558508	+
In-frame	ENST00000550735	ENST00000416293		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
In-frame	ENST00000550735	ENST00000261733		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
In-frame	ENST00000551404	ENST00000416293		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
In-frame	ENST00000551404	ENST00000261733		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
In-frame	ENST00000547305	ENST00000416293		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
In-frame	ENST00000547305	ENST00000261733		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
3UTR-3CDS	ENST00000546394	ENST00000416293		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
3UTR-3CDS	ENST00000546394	ENST00000261733		TCGA	RV	LUAD	TCGA-86-8054-01A	MAPKAPK5	chr12	112280573	+	ALDH2	chr12	112237710	+
3UTR-3CDS	ENST00000555545	ENST00000247182		TCGA	RV	LUAD	TCGA-55-1592-01A	MNAT1	chr14	61201669	+	SIX1	chr14	61113295	-
3UTR-3CDS	ENST00000555545	ENST00000554986		TCGA	RV	LUAD	TCGA-55-1592-01A	MNAT1	chr14	61201669	+	SIX1	chr14	61113295	-
Frame-shit	ENST00000261245	ENST00000247182		TCGA	RV	LUAD	TCGA-55-1592-01A	MNAT1	chr14	61201669	+	SIX1	chr14	61113295	-
In-frame	ENST00000261245	ENST00000554986		TCGA	RV	LUAD	TCGA-55-1592-01A	MNAT1	chr14	61201669	+	SIX1	chr14	61113295	-
Frame-shit	ENST00000539616	ENST00000247182		TCGA	RV	LUAD	TCGA-55-1592-01A	MNAT1	chr14	61201669	+	SIX1	chr14	61113295	-
In-frame	ENST00000539616	ENST00000554986		TCGA	RV	LUAD	TCGA-55-1592-01A	MNAT1	chr14	61201669	+	SIX1	chr14	61113295	-
5UTR-3CDS	ENST00000452400	ENST00000321250		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
5UTR-intron	ENST00000452400	ENST00000518001		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
5UTR-intron	ENST00000452400	ENST00000442880		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
5UTR-intron	ENST00000452400	ENST00000523116		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
5UTR-intron	ENST00000452400	ENST00000518192		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-3CDS	ENST00000267974	ENST00000321250		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000267974	ENST00000518001		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000267974	ENST00000442880		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000267974	ENST00000523116		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000267974	ENST00000518192		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-3CDS	ENST00000524223	ENST00000321250		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000524223	ENST00000518001		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000524223	ENST00000442880		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000524223	ENST00000523116		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
intron-intron	ENST00000524223	ENST00000518192		TCGA	RV	LUAD	TCGA-53-7624-01A	NCOA2	chr8	71315935	-	LEPROTL1	chr8	29959414	+
5UTR-3CDS	ENST00000349945	ENST00000541565		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000413764		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000391905		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000537898		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000545154		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000545781		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000308852		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000261458		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000367010		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5UTR-intron	ENST00000349945	ENST00000367009		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000541565		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000413764		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000391905		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000537898		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000545154		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000545781		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000308852		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000261458		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000367010		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-intron	ENST00000432919	ENST00000367009		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000354436	ENST00000541565		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000354436	ENST00000413764		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000354436	ENST00000391905		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000354436	ENST00000537898		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000354436	ENST00000545154		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000354436	ENST00000545781		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000354436	ENST00000308852		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000354436	ENST00000261458		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000354436	ENST00000367010		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-intron	ENST00000354436	ENST00000367009		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000541565		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000413764		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000391905		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000537898		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000545154		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000545781		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000308852		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000261458		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000367010		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
5CDS-intron	ENST00000567239	ENST00000367009		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000393742	ENST00000541565		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000393742	ENST00000413764		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000393742	ENST00000391905		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000393742	ENST00000537898		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000393742	ENST00000545154		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000393742	ENST00000545781		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000393742	ENST00000308852		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000393742	ENST00000261458		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000393742	ENST00000367010		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-intron	ENST00000393742	ENST00000367009		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000566899	ENST00000541565		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000566899	ENST00000413764		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000566899	ENST00000391905		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000566899	ENST00000537898		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-3CDS	ENST00000566899	ENST00000545154		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000566899	ENST00000545781		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000566899	ENST00000308852		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000566899	ENST00000261458		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-5UTR	ENST00000566899	ENST00000367010		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
intron-intron	ENST00000566899	ENST00000367009		TCGA	RV	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69602451	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000343702	ENST00000344280		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000343702	ENST00000549752		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000343702	ENST00000546386		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
Frame-shit	ENST00000344911	ENST00000344280		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000344911	ENST00000549752		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000344911	ENST00000546386		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
In-frame	ENST00000538383	ENST00000344280		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000538383	ENST00000549752		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000538383	ENST00000546386		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
Frame-shit	ENST00000553059	ENST00000344280		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000553059	ENST00000549752		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
5CDS-intron	ENST00000553059	ENST00000546386		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
intron-3CDS	ENST00000552603	ENST00000344280		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
intron-intron	ENST00000552603	ENST00000549752		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
intron-intron	ENST00000552603	ENST00000546386		TCGA	RV	LUAD	TCGA-05-4427-01A	NTN4	chr12	96180717	-	CCDC38	chr12	96292243	-
In-frame	ENST00000334956	ENST00000256186		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
5CDS-intron	ENST00000334956	ENST00000529028		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
In-frame	ENST00000539723	ENST00000256186		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
5CDS-intron	ENST00000539723	ENST00000529028		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
In-frame	ENST00000550549	ENST00000256186		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
5CDS-intron	ENST00000550549	ENST00000529028		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
intron-3CDS	ENST00000538608	ENST00000256186		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
intron-intron	ENST00000538608	ENST00000529028		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
intron-3CDS	ENST00000526746	ENST00000256186		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
intron-intron	ENST00000526746	ENST00000529028		TCGA	RV	LUAD	TCGA-55-A491-01A	PARVA	chr11	12399330	+	MICALCL	chr11	12341243	+
Frame-shit	ENST00000359062	ENST00000299300		TCGA	RV	LUAD	TCGA-67-3774-01A	PDE3A	chr12	20523178	+	CCT2	chr12	69985839	+
Frame-shit	ENST00000359062	ENST00000544368		TCGA	RV	LUAD	TCGA-67-3774-01A	PDE3A	chr12	20523178	+	CCT2	chr12	69985839	+
Frame-shit	ENST00000359062	ENST00000543146		TCGA	RV	LUAD	TCGA-67-3774-01A	PDE3A	chr12	20523178	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000544307	ENST00000299300		TCGA	RV	LUAD	TCGA-67-3774-01A	PDE3A	chr12	20523178	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000544307	ENST00000544368		TCGA	RV	LUAD	TCGA-67-3774-01A	PDE3A	chr12	20523178	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000544307	ENST00000543146		TCGA	RV	LUAD	TCGA-67-3774-01A	PDE3A	chr12	20523178	+	CCT2	chr12	69985839	+
In-frame	ENST00000379350	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000379350	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000379350	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000379350	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000379350	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000379350	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000379350	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000379348	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000379348	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000379348	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000379348	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000379348	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000379348	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000379348	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000332995	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000332995	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
In-frame	ENST00000332995	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000332995	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000332995	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000332995	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
5CDS-intron	ENST00000332995	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000482982	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000482982	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000482982	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000482982	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000482982	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000482982	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000482982	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379345	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379345	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379345	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379345	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379345	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379345	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379345	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000457702	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000457702	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000457702	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000457702	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000457702	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000457702	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000457702	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379335	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379335	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379335	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379335	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379335	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379335	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379335	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379329	ENST00000356842		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379329	ENST00000359629		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379329	ENST00000538214		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-3CDS	ENST00000379329	ENST00000537768		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379329	ENST00000335712		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379329	ENST00000477659		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
intron-intron	ENST00000379329	ENST00000358510		TCGA	RV	LUAD	TCGA-44-7670-01A	PHACTR1	chr6	12750022	+	BCL11A	chr2	60679801	-
Frame-shit	ENST00000255882	ENST00000345813		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
Frame-shit	ENST00000255882	ENST00000326804		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
5CDS-5UTR	ENST00000255882	ENST00000424679		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
5CDS-3UTR	ENST00000255882	ENST00000597818		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
In-frame	ENST00000572273	ENST00000345813		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
In-frame	ENST00000572273	ENST00000326804		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
5CDS-5UTR	ENST00000572273	ENST00000424679		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
5CDS-3UTR	ENST00000572273	ENST00000597818		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-3CDS	ENST00000414196	ENST00000345813		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-3CDS	ENST00000414196	ENST00000326804		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-5UTR	ENST00000414196	ENST00000424679		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-3UTR	ENST00000414196	ENST00000597818		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-3CDS	ENST00000466162	ENST00000345813		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-3CDS	ENST00000466162	ENST00000326804		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-5UTR	ENST00000466162	ENST00000424679		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
intron-3UTR	ENST00000466162	ENST00000597818		TCGA	RV	LUAD	TCGA-05-4434-01A	PI4KA	chr22	21101871	-	ZNF274	chr19	58718087	+
5CDS-intron	ENST00000345136	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000345136	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000345136	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000357649	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000357649	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000357649	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354589	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354589	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354589	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000398774	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000398774	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000398774	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000322810	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000322810	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000322810	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354958	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354958	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354958	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000356346	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000356346	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000356346	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000436759	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000436759	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000436759	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527096	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527096	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527096	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7552-01A	PLEC	chr8	144989321	-	EIF2AK2	chr2	37342384	-
5CDS-5UTR	ENST00000260045	ENST00000529704		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	PRKRIR	chr11	76091792	-	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000260045	ENST00000312419		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	PRKRIR	chr11	76091792	-	POLD4	chr11	67120548	-
5CDS-5UTR	ENST00000260045	ENST00000539074		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	PRKRIR	chr11	76091792	-	POLD4	chr11	67120548	-
intron-5UTR	ENST00000531878	ENST00000529704		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	PRKRIR	chr11	76091792	-	POLD4	chr11	67120548	-
intron-5UTR	ENST00000531878	ENST00000312419		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	PRKRIR	chr11	76091792	-	POLD4	chr11	67120548	-
intron-5UTR	ENST00000531878	ENST00000539074		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	PRKRIR	chr11	76091792	-	POLD4	chr11	67120548	-
intron-3CDS	ENST00000522684	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000535192	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000519465	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000517887	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000521059	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000395218	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000538769	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000340930	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000519419	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000430260	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000519881	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
5UTR-3CDS	ENST00000520892	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000519635	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000517712	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000522950	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
intron-3CDS	ENST00000520151	ENST00000270458		TCGA	RV	LUAD	TCGA-91-6848-01A	PTK2	chr8	142010979	-	CACNG8	chr19	54481400	+
Frame-shit	ENST00000254260	ENST00000335523		TCGA	RV	LUAD	TCGA-55-8301-01A	RHPN2	chr19	33555690	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000400226	ENST00000335523		TCGA	RV	LUAD	TCGA-55-8301-01A	RHPN2	chr19	33555690	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000588683	ENST00000335523		TCGA	RV	LUAD	TCGA-55-8301-01A	RHPN2	chr19	33555690	-	VSTM2B	chr19	30054753	+
Frame-shit	ENST00000357387	ENST00000351578		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000357387	ENST00000515010		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000357387	ENST00000505428		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000357387	ENST00000512982		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000357387	ENST00000540520		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
5CDS-intron	ENST00000357387	ENST00000503065		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000296782	ENST00000351578		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000296782	ENST00000515010		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000296782	ENST00000505428		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000296782	ENST00000512982		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
Frame-shit	ENST00000296782	ENST00000540520		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
5CDS-intron	ENST00000296782	ENST00000503065		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
intron-3CDS	ENST00000503698	ENST00000351578		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
intron-3CDS	ENST00000503698	ENST00000515010		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
intron-3CDS	ENST00000503698	ENST00000505428		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
intron-3CDS	ENST00000503698	ENST00000512982		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
intron-3CDS	ENST00000503698	ENST00000540520		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
intron-intron	ENST00000503698	ENST00000503065		TCGA	RV	LUAD	TCGA-44-7660-01A	RICTOR	chr5	39021141	-	FYB	chr5	39110491	-
5UTR-5UTR	ENST00000543470	ENST00000392365		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543470	ENST00000233156		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543470	ENST00000409676		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543470	ENST00000339091		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366960	ENST00000392365		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366960	ENST00000233156		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366960	ENST00000409676		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366960	ENST00000339091		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366959	ENST00000392365		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366959	ENST00000233156		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366959	ENST00000409676		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5CDS-5UTR	ENST00000366959	ENST00000339091		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543354	ENST00000392365		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543354	ENST00000233156		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543354	ENST00000409676		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
5UTR-5UTR	ENST00000543354	ENST00000339091		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
3UTR-5UTR	ENST00000490299	ENST00000392365		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
3UTR-5UTR	ENST00000490299	ENST00000233156		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
3UTR-5UTR	ENST00000490299	ENST00000409676		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
3UTR-5UTR	ENST00000490299	ENST00000339091		TCGA	RV	LUAD	TCGA-91-7771-01A	RPS6KC1	chr1	213251158	+	TFPI	chr2	188368497	-
intron-3CDS	ENST00000470422	ENST00000323541		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-3CDS	ENST00000470422	ENST00000454838		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-3CDS	ENST00000470422	ENST00000449825		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-3CDS	ENST00000470422	ENST00000323578		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-intron	ENST00000470422	ENST00000429789		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-intron	ENST00000470422	ENST00000336845		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-intron	ENST00000470422	ENST00000528581		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-intron	ENST00000470422	ENST00000436108		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
intron-5UTR	ENST00000470422	ENST00000526714		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000246043	ENST00000323541		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000246043	ENST00000454838		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000246043	ENST00000449825		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000246043	ENST00000323578		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000246043	ENST00000429789		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000246043	ENST00000336845		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000246043	ENST00000528581		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000246043	ENST00000436108		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-5UTR	ENST00000246043	ENST00000526714		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377813	ENST00000323541		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377813	ENST00000454838		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377813	ENST00000449825		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377813	ENST00000323578		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377813	ENST00000429789		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377813	ENST00000336845		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377813	ENST00000528581		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377813	ENST00000436108		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-5UTR	ENST00000377813	ENST00000526714		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377807	ENST00000323541		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377807	ENST00000454838		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377807	ENST00000449825		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000377807	ENST00000323578		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377807	ENST00000429789		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377807	ENST00000336845		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377807	ENST00000528581		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000377807	ENST00000436108		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-5UTR	ENST00000377807	ENST00000526714		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
In-frame	ENST00000360807	ENST00000323541		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
In-frame	ENST00000360807	ENST00000454838		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
In-frame	ENST00000360807	ENST00000449825		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
In-frame	ENST00000360807	ENST00000323578		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000360807	ENST00000429789		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000360807	ENST00000336845		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000360807	ENST00000528581		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000360807	ENST00000436108		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-5UTR	ENST00000360807	ENST00000526714		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000455029	ENST00000323541		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000455029	ENST00000454838		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000455029	ENST00000449825		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
Frame-shit	ENST00000455029	ENST00000323578		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000455029	ENST00000429789		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000455029	ENST00000336845		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000455029	ENST00000528581		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-intron	ENST00000455029	ENST00000436108		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-5UTR	ENST00000455029	ENST00000526714		TCGA	RV	LUAD	TCGA-49-4512-01A	RRBP1	chr20	17614105	-	CHID1	chr11	893519	-
5CDS-5UTR	ENST00000260443	ENST00000336787		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000260443	ENST00000396307		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000260443	ENST00000564609		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
5CDS-5UTR	ENST00000260443	ENST00000569493		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
5CDS-intron	ENST00000260443	ENST00000561545		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000565854	ENST00000336787		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000565854	ENST00000396307		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000565854	ENST00000564609		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
intron-5UTR	ENST00000565854	ENST00000569493		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
intron-intron	ENST00000565854	ENST00000561545		TCGA	RV	LUAD	TCGA-44-7660-01A	RSL24D1	chr15	55489008	-	RAB27A	chr15	55527154	-
In-frame	ENST00000331738	ENST00000420886		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000331738	ENST00000267176		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000331738	ENST00000602750		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000331738	ENST00000602398		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000354654	ENST00000420886		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000354654	ENST00000267176		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000354654	ENST00000602750		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000354654	ENST00000602398		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000392442	ENST00000420886		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000392442	ENST00000267176		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000392442	ENST00000602750		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000392442	ENST00000602398		TCGA	RV	LUAD	TCGA-05-4427-01A	RSRC2	chr12	122992765	-	SBNO1	chr12	123834988	-
In-frame	ENST00000409792	ENST00000335044		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000265529		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000444589		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000452770		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000352910		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-5UTR	ENST00000409792	ENST00000487440		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-intron	ENST00000409792	ENST00000425853		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-intron	ENST00000409792	ENST00000432493		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-intron	ENST00000409792	ENST00000425452		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000335044		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000265529		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000444589		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000452770		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000352910		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-5UTR	ENST00000492397	ENST00000487440		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-intron	ENST00000492397	ENST00000425853		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-intron	ENST00000492397	ENST00000432493		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-intron	ENST00000492397	ENST00000425452		TCGA	RV	LUAD	TCGA-86-8673-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
Frame-shit	ENST00000369774	ENST00000369764		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
Frame-shit	ENST00000355946	ENST00000369764		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	LUAD	TCGA-44-7660-01A	SH3PXD2A	chr10	105561040	-	OBFC1	chr10	105664914	-
5CDS-3UTR	ENST00000368445	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368445	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368445	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368449	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368449	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368449	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000448116	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000448116	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000448116	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368450	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368450	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368450	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368453	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000368453	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000368453	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000606391	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000606391	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000606391	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000490667	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000490667	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000490667	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7574-01A	SHC1	chr1	154934774	-	FOXP1	chr3	71007472	-
5UTR-3CDS	ENST00000580123	ENST00000331427		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
5UTR-3CDS	ENST00000580123	ENST00000580223		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
3UTR-3CDS	ENST00000585293	ENST00000331427		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
3UTR-3CDS	ENST00000585293	ENST00000580223		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
5UTR-3CDS	ENST00000329783	ENST00000331427		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
5UTR-3CDS	ENST00000329783	ENST00000580223		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
5UTR-3CDS	ENST00000450736	ENST00000331427		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
5UTR-3CDS	ENST00000450736	ENST00000580223		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
intron-3CDS	ENST00000538213	ENST00000331427		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
intron-3CDS	ENST00000538213	ENST00000580223		TCGA	RV	LUAD	TCGA-55-7576-01A	SLC16A5	chr17	73085399	+	OTOP2	chr17	72923318	+
Frame-shit	ENST00000280871	ENST00000247833		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-intron	ENST00000280871	ENST00000378815		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-intron	ENST00000280871	ENST00000325555		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-3UTR	ENST00000280871	ENST00000483530		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-3UTR	ENST00000280871	ENST00000550536		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-3UTR	ENST00000280871	ENST00000362025		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-3UTR	ENST00000280871	ENST00000551641		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-3UTR	ENST00000280871	ENST00000553099		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
5CDS-3UTR	ENST00000280871	ENST00000550847		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3CDS	ENST00000380858	ENST00000247833		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-intron	ENST00000380858	ENST00000378815		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-intron	ENST00000380858	ENST00000325555		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3UTR	ENST00000380858	ENST00000483530		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3UTR	ENST00000380858	ENST00000550536		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3UTR	ENST00000380858	ENST00000362025		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3UTR	ENST00000380858	ENST00000551641		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3UTR	ENST00000380858	ENST00000553099		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
intron-3UTR	ENST00000380858	ENST00000550847		TCGA	RV	LUAD	TCGA-49-4501-01A	SLC2A13	chr12	40223905	-	RAB3IP	chr12	70209144	+
Frame-shit	ENST00000327367	ENST00000288840		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
5CDS-intron	ENST00000327367	ENST00000457357		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
5CDS-intron	ENST00000327367	ENST00000338426		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000559092	ENST00000288840		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000559092	ENST00000457357		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000559092	ENST00000338426		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000540846	ENST00000288840		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000540846	ENST00000457357		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000540846	ENST00000338426		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000439724	ENST00000288840		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000439724	ENST00000457357		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000439724	ENST00000338426		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000537194	ENST00000288840		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000537194	ENST00000457357		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000537194	ENST00000338426		TCGA	RV	LUAD	TCGA-05-4427-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
In-frame	ENST00000371847	ENST00000371833		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
5CDS-5UTR	ENST00000371847	ENST00000476096		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
In-frame	ENST00000371843	ENST00000371833		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
5CDS-5UTR	ENST00000371843	ENST00000476096		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
Frame-shit	ENST00000396199	ENST00000371833		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
5CDS-5UTR	ENST00000396199	ENST00000476096		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
intron-3CDS	ENST00000463938	ENST00000371833		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
intron-5UTR	ENST00000463938	ENST00000476096		TCGA	RV	LUAD	TCGA-78-7154-01A	SPATA6	chr1	48771459	-	BEND5	chr1	49193715	-
intron-intron	ENST00000585748	ENST00000504881		TCGA	RV	LUAD	TCGA-62-8395-01A	STK11	chr19	1207202	+	SRFBP1	chr5	121354955	+
intron-intron	ENST00000585748	ENST00000339397		TCGA	RV	LUAD	TCGA-62-8395-01A	STK11	chr19	1207202	+	SRFBP1	chr5	121354955	+
5CDS-intron	ENST00000326873	ENST00000504881		TCGA	RV	LUAD	TCGA-62-8395-01A	STK11	chr19	1207202	+	SRFBP1	chr5	121354955	+
5CDS-intron	ENST00000326873	ENST00000339397		TCGA	RV	LUAD	TCGA-62-8395-01A	STK11	chr19	1207202	+	SRFBP1	chr5	121354955	+
In-frame	ENST00000352903	ENST00000313077		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
In-frame	ENST00000352903	ENST00000560848		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
In-frame	ENST00000352903	ENST00000435939		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5UTR-3CDS	ENST00000537232	ENST00000313077		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5UTR-3CDS	ENST00000537232	ENST00000560848		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5UTR-3CDS	ENST00000537232	ENST00000435939		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
In-frame	ENST00000561221	ENST00000313077		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
In-frame	ENST00000561221	ENST00000560848		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
In-frame	ENST00000561221	ENST00000435939		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5UTR-3CDS	ENST00000558083	ENST00000313077		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5UTR-3CDS	ENST00000558083	ENST00000560848		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5UTR-3CDS	ENST00000558083	ENST00000435939		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
3UTR-3CDS	ENST00000559142	ENST00000313077		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
3UTR-3CDS	ENST00000559142	ENST00000560848		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
3UTR-3CDS	ENST00000559142	ENST00000435939		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
intron-3CDS	ENST00000560582	ENST00000313077		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
intron-3CDS	ENST00000560582	ENST00000560848		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
intron-3CDS	ENST00000560582	ENST00000435939		TCGA	RV	LUAD	TCGA-75-7031-01A	TEX9	chr15	56665702	+	CYFIP1	chr15	22990057	+
5CDS-intron	ENST00000377869	ENST00000330266		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000405975		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000415080		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000405006		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000485353		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000402360		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000404790		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000403856		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000330266		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000405975		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000415080		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000405006		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000485353		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000402360		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000404790		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000403856		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000330266		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000405975		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000415080		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000405006		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000485353		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000402360		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000404790		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000403856		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000330266		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000405975		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000415080		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000405006		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000485353		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000402360		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000404790		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000403856		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000330266		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000405975		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000415080		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000405006		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000485353		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000402360		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000404790		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000403856		TCGA	RV	LUAD	TCGA-91-6836-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
intron-3CDS	ENST00000361236	ENST00000260228		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
intron-intron	ENST00000361236	ENST00000544938		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
In-frame	ENST00000398136	ENST00000260228		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
5CDS-intron	ENST00000398136	ENST00000544938		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
5UTR-3CDS	ENST00000532161	ENST00000260228		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
5UTR-intron	ENST00000532161	ENST00000544938		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
5UTR-3CDS	ENST00000525577	ENST00000260228		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
5UTR-intron	ENST00000525577	ENST00000544938		TCGA	RV	LUAD	TCGA-35-4122-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102480761	-
In-frame	ENST00000301923	ENST00000402357		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
Frame-shit	ENST00000301923	ENST00000358295		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
5CDS-3UTR	ENST00000301923	ENST00000473898		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
5CDS-3UTR	ENST00000301923	ENST00000406880		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
In-frame	ENST00000402203	ENST00000402357		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
Frame-shit	ENST00000402203	ENST00000358295		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
5CDS-3UTR	ENST00000402203	ENST00000473898		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
5CDS-3UTR	ENST00000402203	ENST00000406880		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3CDS	ENST00000454349	ENST00000402357		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3CDS	ENST00000454349	ENST00000358295		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3UTR	ENST00000454349	ENST00000473898		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3UTR	ENST00000454349	ENST00000406880		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3CDS	ENST00000335727	ENST00000402357		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3CDS	ENST00000335727	ENST00000358295		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3UTR	ENST00000335727	ENST00000473898		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3UTR	ENST00000335727	ENST00000406880		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3CDS	ENST00000497559	ENST00000402357		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3CDS	ENST00000497559	ENST00000358295		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3UTR	ENST00000497559	ENST00000473898		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
intron-3UTR	ENST00000497559	ENST00000406880		TCGA	RV	LUAD	TCGA-44-7659-01A	TNRC6B	chr22	40552186	+	FAM19A5	chr22	49145651	+
5CDS-intron	ENST00000361641	ENST00000475338		TCGA	RV	LUAD	TCGA-44-5644-01A	TSEN15	chr1	184021024	+	ACBD6	chr1	180461500	-
5CDS-intron	ENST00000361641	ENST00000367595		TCGA	RV	LUAD	TCGA-44-5644-01A	TSEN15	chr1	184021024	+	ACBD6	chr1	180461500	-
5CDS-intron	ENST00000533373	ENST00000475338		TCGA	RV	LUAD	TCGA-44-5644-01A	TSEN15	chr1	184021024	+	ACBD6	chr1	180461500	-
5CDS-intron	ENST00000533373	ENST00000367595		TCGA	RV	LUAD	TCGA-44-5644-01A	TSEN15	chr1	184021024	+	ACBD6	chr1	180461500	-
5CDS-intron	ENST00000423085	ENST00000475338		TCGA	RV	LUAD	TCGA-44-5644-01A	TSEN15	chr1	184021024	+	ACBD6	chr1	180461500	-
5CDS-intron	ENST00000423085	ENST00000367595		TCGA	RV	LUAD	TCGA-44-5644-01A	TSEN15	chr1	184021024	+	ACBD6	chr1	180461500	-
Frame-shit	ENST00000301831	ENST00000292246		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
Frame-shit	ENST00000301831	ENST00000350459		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
Frame-shit	ENST00000301831	ENST00000396091		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000301831	ENST00000414522		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000301831	ENST00000451430		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-intron	ENST00000301831	ENST00000495772		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
Frame-shit	ENST00000420927	ENST00000292246		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
Frame-shit	ENST00000420927	ENST00000350459		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
Frame-shit	ENST00000420927	ENST00000396091		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000420927	ENST00000414522		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-3UTR	ENST00000420927	ENST00000451430		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-intron	ENST00000420927	ENST00000495772		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3CDS	ENST00000489118	ENST00000292246		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3CDS	ENST00000489118	ENST00000350459		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3CDS	ENST00000489118	ENST00000396091		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3UTR	ENST00000489118	ENST00000414522		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3UTR	ENST00000489118	ENST00000451430		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-intron	ENST00000489118	ENST00000495772		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3CDS	ENST00000414606	ENST00000292246		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3CDS	ENST00000414606	ENST00000350459		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3CDS	ENST00000414606	ENST00000396091		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3UTR	ENST00000414606	ENST00000414522		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-3UTR	ENST00000414606	ENST00000451430		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
intron-intron	ENST00000414606	ENST00000495772		TCGA	RV	LUAD	TCGA-44-6778-01A	ULK4	chr3	41925366	-	ANO10	chr3	43408466	-
5CDS-5UTR	ENST00000356136	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
5CDS-5UTR	ENST00000356136	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
5UTR-5UTR	ENST00000528420	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
5UTR-5UTR	ENST00000528420	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000533454	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000533454	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000531818	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000531818	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000532130	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000532130	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000539288	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000539288	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000525872	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000525872	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000538870	ENST00000310128		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
intron-5UTR	ENST00000538870	ENST00000525550		TCGA	RV	LUAD	TCGA-86-8074-01A	UVRAG	chr11	75563045	+	KCNE3	chr11	74173148	-
In-frame	ENST00000437048	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
5CDS-5UTR	ENST00000437048	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
intron-3CDS	ENST00000574029	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
intron-5UTR	ENST00000574029	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
intron-3CDS	ENST00000576149	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
intron-5UTR	ENST00000576149	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
5UTR-3CDS	ENST00000446250	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
5UTR-5UTR	ENST00000446250	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
In-frame	ENST00000291074	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
5CDS-5UTR	ENST00000291074	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
In-frame	ENST00000571805	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
5CDS-5UTR	ENST00000571805	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
In-frame	ENST00000401468	ENST00000381638		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
5CDS-5UTR	ENST00000401468	ENST00000574474		TCGA	RV	LUAD	TCGA-55-8087-01A	VPS53	chr17	600658	-	ZZEF1	chr17	4027345	-
In-frame	ENST00000432306	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
In-frame	ENST00000432306	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
In-frame	ENST00000432306	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000432306	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000432306	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000432306	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000432306	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
In-frame	ENST00000393077	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
In-frame	ENST00000393077	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
In-frame	ENST00000393077	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000393077	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000393077	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000393077	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000393077	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-3CDS	ENST00000483122	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-3CDS	ENST00000483122	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-3CDS	ENST00000483122	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-5UTR	ENST00000483122	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-intron	ENST00000483122	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-5UTR	ENST00000483122	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
intron-5UTR	ENST00000483122	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7554-01A	VTI1A	chr10	114298089	+	C10orf90	chr10	128202508	-
In-frame	ENST00000392882	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
In-frame	ENST00000392882	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000358655	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000358655	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000355338	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000355338	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000344102	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000344102	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000557135	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000557135	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000556645	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000556645	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000554084	ENST00000261475		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000554084	ENST00000555644		TCGA	RV	LUAD	TCGA-62-8402-01A	WARS	chr14	100800125	-	PPP2R3C	chr14	35585943	-
In-frame	ENST00000526343	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000526343	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
5CDS-intron	ENST00000526343	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000282441	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000282441	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
5CDS-intron	ENST00000282441	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000537274	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000537274	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
5CDS-intron	ENST00000537274	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000345877	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000345877	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
5CDS-intron	ENST00000345877	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000531439	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000531439	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
5CDS-intron	ENST00000531439	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000524575	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
In-frame	ENST00000524575	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
5CDS-intron	ENST00000524575	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
intron-3CDS	ENST00000528834	ENST00000434758		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
intron-3CDS	ENST00000528834	ENST00000526781		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
intron-intron	ENST00000528834	ENST00000534360		TCGA	RV	LUAD	TCGA-62-A46O-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101951946	+
Frame-shit	ENST00000359019	ENST00000257575		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
Frame-shit	ENST00000359019	ENST00000392549		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
Frame-shit	ENST00000359019	ENST00000407967		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
5CDS-intron	ENST00000359019	ENST00000319176		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
5CDS-intron	ENST00000359019	ENST00000551251		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000334822	ENST00000257575		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000334822	ENST00000392549		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000334822	ENST00000407967		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
5CDS-intron	ENST00000334822	ENST00000319176		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
5CDS-intron	ENST00000334822	ENST00000551251		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000426126	ENST00000257575		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000426126	ENST00000392549		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000426126	ENST00000407967		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
5CDS-intron	ENST00000426126	ENST00000319176		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
5CDS-intron	ENST00000426126	ENST00000551251		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
intron-3CDS	ENST00000550789	ENST00000257575		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
intron-3CDS	ENST00000550789	ENST00000392549		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
intron-3CDS	ENST00000550789	ENST00000407967		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
intron-intron	ENST00000550789	ENST00000319176		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
intron-intron	ENST00000550789	ENST00000551251		TCGA	RV	LUAD	TCGA-86-6851-01A	ZDHHC17	chr12	77158109	+	RNFT2	chr12	117271597	+
In-frame	ENST00000344099	ENST00000345506		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF14	chr19	19843765	-	STAT5A	chr17	40447637	+
In-frame	ENST00000344099	ENST00000590949		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF14	chr19	19843765	-	STAT5A	chr17	40447637	+
In-frame	ENST00000344099	ENST00000546010		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF14	chr19	19843765	-	STAT5A	chr17	40447637	+
In-frame	ENST00000344099	ENST00000452307		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF14	chr19	19843765	-	STAT5A	chr17	40447637	+
In-frame	ENST00000344099	ENST00000588868		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF14	chr19	19843765	-	STAT5A	chr17	40447637	+
5CDS-intron	ENST00000344099	ENST00000587646		TCGA	RV	LUAD	TCGA-86-7953-01A	ZNF14	chr19	19843765	-	STAT5A	chr17	40447637	+
Frame-shit	ENST00000274181	ENST00000310581		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000274181	ENST00000296820		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000274181	ENST00000334602		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000274181	ENST00000508104		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000274181	ENST00000522877		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000511368	ENST00000310581		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000511368	ENST00000296820		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000511368	ENST00000334602		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
Frame-shit	ENST00000511368	ENST00000508104		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000511368	ENST00000522877		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000513709	ENST00000310581		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000513709	ENST00000296820		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000513709	ENST00000334602		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000513709	ENST00000508104		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
intron-intron	ENST00000513709	ENST00000522877		TCGA	RV	LUAD	TCGA-44-2662-01A	ADAMTS16	chr5	5191903	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000409869	ENST00000264170		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-3CDS	ENST00000409869	ENST00000375773		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-3CDS	ENST00000409869	ENST00000409512		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-intron	ENST00000409869	ENST00000410015		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
In-frame	ENST00000295095	ENST00000264170		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
In-frame	ENST00000295095	ENST00000375773		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
In-frame	ENST00000295095	ENST00000409512		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
5CDS-intron	ENST00000295095	ENST00000410015		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-3CDS	ENST00000473426	ENST00000264170		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-3CDS	ENST00000473426	ENST00000375773		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-3CDS	ENST00000473426	ENST00000409512		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
intron-intron	ENST00000473426	ENST00000410015		TCGA	RV	LUAD	TCGA-38-4630-01A	ARHGAP15	chr2	144008169	+	KYNU	chr2	143742653	+
In-frame	ENST00000367942	ENST00000504449		TCGA	RV	LUAD	TCGA-44-7660-01A	ATF6	chr1	161772062	+	PCP4L1	chr1	161253458	+
intron-3CDS	ENST00000476437	ENST00000504449		TCGA	RV	LUAD	TCGA-44-7660-01A	ATF6	chr1	161772062	+	PCP4L1	chr1	161253458	+
5UTR-intron	ENST00000373115	ENST00000398842		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-intron	ENST00000373115	ENST00000398809		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-intron	ENST00000373115	ENST00000461841		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-intron	ENST00000373115	ENST00000299366		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-intron	ENST00000373115	ENST00000224721		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-intron	ENST00000373115	ENST00000398788		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-3UTR	ENST00000373115	ENST00000475158		TCGA	RV	LUAD	TCGA-78-8662-01A	CHST3	chr10	73724452	+	CDH23	chr10	73571072	+
5UTR-intron	ENST00000355078	ENST00000504880		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000355078	ENST00000396865		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000355078	ENST00000539768		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000355078	ENST00000318672		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000355078	ENST00000515629		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000355078	ENST00000416547		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000355078	ENST00000512595		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000504880		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000396865		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000539768		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000318672		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000515629		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000416547		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5UTR-intron	ENST00000302763	ENST00000512595		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000504880		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000396865		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000539768		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000318672		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000515629		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000416547		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000518825	ENST00000512595		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000504880		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000396865		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000539768		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000318672		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000515629		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000416547		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000520400	ENST00000512595		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000504880		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000396865		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000539768		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000318672		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000515629		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000416547		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
intron-intron	ENST00000540387	ENST00000512595		TCGA	RV	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	55000262	-
5CDS-5UTR	ENST00000326840	ENST00000483910		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-intron	ENST00000326840	ENST00000462152		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326840	ENST00000265261		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326840	ENST00000394162		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326840	ENST00000468553		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326857	ENST00000483910		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-intron	ENST00000326857	ENST00000462152		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326857	ENST00000265261		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326857	ENST00000394162		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
5CDS-5UTR	ENST00000326857	ENST00000468553		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
intron-5UTR	ENST00000469648	ENST00000483910		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
intron-intron	ENST00000469648	ENST00000462152		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
intron-5UTR	ENST00000469648	ENST00000265261		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
intron-5UTR	ENST00000469648	ENST00000394162		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
intron-5UTR	ENST00000469648	ENST00000468553		TCGA	RV	LUAD	TCGA-05-4427-01A	DCBLD2	chr3	98600384	-	ST3GAL6	chr3	98487274	+
In-frame	ENST00000220496	ENST00000258930		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
5CDS-intron	ENST00000220496	ENST00000539011		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
5CDS-intron	ENST00000220496	ENST00000557846		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
5CDS-intron	ENST00000220496	ENST00000560618		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
intron-3CDS	ENST00000558727	ENST00000258930		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
intron-intron	ENST00000558727	ENST00000539011		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
intron-intron	ENST00000558727	ENST00000557846		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
intron-intron	ENST00000558727	ENST00000560618		TCGA	RV	LUAD	TCGA-55-1592-01A	DNAJC17	chr15	41099567	-	CIB2	chr15	78416081	-
Frame-shit	ENST00000454859	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000454859	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000454859	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000454859	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000454859	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000454859	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000454859	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000454859	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-5UTR	ENST00000454859	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000474289	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000474289	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000474289	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000474289	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000474289	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000474289	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000474289	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000474289	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-5UTR	ENST00000474289	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000528402	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000528402	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000528402	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000528402	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000528402	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000528402	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000528402	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000528402	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-5UTR	ENST00000528402	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000454591	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000454591	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000454591	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000454591	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000454591	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000454591	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000454591	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000454591	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-5UTR	ENST00000454591	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368291	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368291	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368291	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368291	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368291	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000368291	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000368291	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000368291	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-5UTR	ENST00000368291	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000309620	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000309620	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000309620	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000309620	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000309620	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000309620	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000309620	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000309620	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-5UTR	ENST00000309620	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000430841	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000430841	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000430841	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000430841	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000430841	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000430841	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000430841	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000430841	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-5UTR	ENST00000430841	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368289	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368289	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368289	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368289	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-3CDS	ENST00000368289	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000368289	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000368289	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-intron	ENST00000368289	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
3UTR-5UTR	ENST00000368289	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000531967	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000531967	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000531967	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000531967	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
In-frame	ENST00000531967	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000531967	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000531967	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-intron	ENST00000531967	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
5CDS-5UTR	ENST00000531967	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-3CDS	ENST00000488087	ENST00000368682		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-3CDS	ENST00000488087	ENST00000354650		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-3CDS	ENST00000488087	ENST00000229471		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-3CDS	ENST00000488087	ENST00000368667		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-3CDS	ENST00000488087	ENST00000368678		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-intron	ENST00000488087	ENST00000229470		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-intron	ENST00000488087	ENST00000356013		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-intron	ENST00000488087	ENST00000538466		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
intron-5UTR	ENST00000488087	ENST00000476769		TCGA	RV	LUAD	TCGA-97-8174-01A	ECHDC1	chr6	127635961	-	FYN	chr6	112029223	-
Frame-shit	ENST00000371730	ENST00000316485		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
Frame-shit	ENST00000371730	ENST00000371158		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
Frame-shit	ENST00000371730	ENST00000543708		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
5CDS-5UTR	ENST00000371730	ENST00000545929		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
5CDS-intron	ENST00000371730	ENST00000472512		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
Frame-shit	ENST00000371733	ENST00000316485		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
Frame-shit	ENST00000371733	ENST00000371158		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
Frame-shit	ENST00000371733	ENST00000543708		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
5CDS-5UTR	ENST00000371733	ENST00000545929		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
5CDS-intron	ENST00000371733	ENST00000472512		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-3CDS	ENST00000396122	ENST00000316485		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-3CDS	ENST00000396122	ENST00000371158		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-3CDS	ENST00000396122	ENST00000543708		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-5UTR	ENST00000396122	ENST00000545929		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-intron	ENST00000396122	ENST00000472512		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-3CDS	ENST00000493793	ENST00000316485		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-3CDS	ENST00000493793	ENST00000371158		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-3CDS	ENST00000493793	ENST00000543708		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-5UTR	ENST00000493793	ENST00000545929		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
intron-intron	ENST00000493793	ENST00000472512		TCGA	RV	LUAD	TCGA-91-8499-01A	EPS15	chr1	51984871	-	INADL	chr1	62503649	+
5CDS-intron	ENST00000373314	ENST00000322776		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373314	ENST00000532303		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373314	ENST00000529927		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373314	ENST00000415352		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373314	ENST00000526169		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373312	ENST00000322776		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373312	ENST00000532303		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373312	ENST00000529927		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373312	ENST00000415352		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000373312	ENST00000526169		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000468379	ENST00000322776		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000468379	ENST00000532303		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000468379	ENST00000529927		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000468379	ENST00000415352		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000468379	ENST00000526169		TCGA	RV	LUAD	TCGA-95-7039-01A	FAM129B	chr9	130267622	-	NDUFV1	chr11	67375697	+
intron-3CDS	ENST00000519824	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-intron	ENST00000519824	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000522746	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-intron	ENST00000522746	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-3CDS	ENST00000523509	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-intron	ENST00000523509	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-3CDS	ENST00000401979	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-intron	ENST00000401979	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000519110	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-intron	ENST00000519110	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000522250	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-intron	ENST00000522250	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-3CDS	ENST00000517654	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-intron	ENST00000517654	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000519540	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-intron	ENST00000519540	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000522941	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
intron-intron	ENST00000522941	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-3CDS	ENST00000518879	ENST00000288368		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-intron	ENST00000518879	ENST00000529398		TCGA	RV	LUAD	TCGA-78-7153-01A	FAM49B	chr8	131028616	-	PREX2	chr8	69103957	+
5UTR-3CDS	ENST00000313833	ENST00000399332		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
5UTR-3CDS	ENST00000313833	ENST00000553700		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
5UTR-intron	ENST00000313833	ENST00000556474		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-3CDS	ENST00000555087	ENST00000399332		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-3CDS	ENST00000555087	ENST00000553700		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-intron	ENST00000555087	ENST00000556474		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-3CDS	ENST00000440021	ENST00000399332		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-3CDS	ENST00000440021	ENST00000553700		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-intron	ENST00000440021	ENST00000556474		TCGA	RV	LUAD	TCGA-78-8660-01A	FBXO34	chr14	55738255	+	HECTD1	chr14	31638674	-
intron-3CDS	ENST00000315930	ENST00000373131		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000315930	ENST00000373125		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000315930	ENST00000508860		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000315930	ENST00000510272		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000305414	ENST00000373131		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000305414	ENST00000373125		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000305414	ENST00000508860		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000305414	ENST00000510272		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000441825	ENST00000373131		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000441825	ENST00000373125		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000441825	ENST00000508860		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-3CDS	ENST00000441825	ENST00000510272		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000370603	ENST00000373131		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000370603	ENST00000373125		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000370603	ENST00000508860		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000370603	ENST00000510272		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000541469	ENST00000373131		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000541469	ENST00000373125		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000541469	ENST00000508860		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
Frame-shit	ENST00000541469	ENST00000510272		TCGA	RV	LUAD	TCGA-67-3773-01A	FGF13	chrX	138286221	-	DACH2	chrX	86067859	+
intron-intron	ENST00000307968	ENST00000343846		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000366878		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000484758		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000494793		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000478605		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000454695		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000344029		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307968	ENST00000366877		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000343846		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000366878		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000484758		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000494793		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000478605		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000454695		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000344029		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000307954	ENST00000366877		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000343846		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000366878		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000484758		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000494793		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000478605		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000454695		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000344029		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000510461	ENST00000366877		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000343846		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000366878		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000484758		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000494793		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000478605		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000454695		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000344029		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000511848	ENST00000366877		TCGA	RV	LUAD	TCGA-78-7161-01A	FNIP1	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-3CDS	ENST00000299293	ENST00000552285		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-3CDS	ENST00000299293	ENST00000315970		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000439210		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000389146		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000413095		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000551035		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000435406		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000257966		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000299293	ENST00000389142		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-3CDS	ENST00000549921	ENST00000552285		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-3CDS	ENST00000549921	ENST00000315970		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000439210		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000389146		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000413095		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000551035		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000435406		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000257966		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000549921	ENST00000389142		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-3CDS	ENST00000550389	ENST00000552285		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-3CDS	ENST00000550389	ENST00000315970		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000439210		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000389146		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000413095		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000551035		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000435406		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000257966		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
5UTR-intron	ENST00000550389	ENST00000389142		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-3CDS	ENST00000397997	ENST00000552285		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-3CDS	ENST00000397997	ENST00000315970		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000439210		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000389146		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000413095		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000551035		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000435406		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000257966		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-intron	ENST00000397997	ENST00000389142		TCGA	RV	LUAD	TCGA-86-8585-01A	FRS2	chr12	69864310	+	OS9	chr12	58088533	+
intron-3CDS	ENST00000437099	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000323816	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
In-frame	ENST00000432992	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
5UTR-3CDS	ENST00000540214	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000585266	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000580865	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000583882	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000542249	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000396115	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000579158	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000578655	ENST00000226207		TCGA	RV	LUAD	TCGA-97-8172-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
5CDS-intron	ENST00000355904	ENST00000538928		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000584529		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000290866		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000428043		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000490216		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000577647		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000290863		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000421982		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-intron	ENST00000355904	ENST00000413513		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000538928		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000584529		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000290866		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000428043		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000490216		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000577647		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000290863		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000421982		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
intron-intron	ENST00000522833	ENST00000413513		TCGA	RV	LUAD	TCGA-95-7948-01A	GTF2E2	chr8	30510950	-	ACE	chr17	61561691	+
5CDS-3UTR	ENST00000014930	ENST00000540224		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	HEBP1	chr12	13152971	-	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000014930	ENST00000228865		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	HEBP1	chr12	13152971	-	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000540916	ENST00000540224		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	HEBP1	chr12	13152971	-	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000540916	ENST00000228865		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	HEBP1	chr12	13152971	-	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000536942	ENST00000540224		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	HEBP1	chr12	13152971	-	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000536942	ENST00000228865		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	HEBP1	chr12	13152971	-	CREBL2	chr12	12788711	+
Frame-shit	ENST00000340170	ENST00000347580		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000340170	ENST00000379853		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000340170	ENST00000265708		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000340170	ENST00000521880		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000340170	ENST00000523181		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000263208	ENST00000347580		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000263208	ENST00000379853		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000263208	ENST00000265708		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000263208	ENST00000521880		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000263208	ENST00000523181		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000541063	ENST00000347580		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000541063	ENST00000379853		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000541063	ENST00000265708		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000541063	ENST00000521880		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000541063	ENST00000523181		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000546308	ENST00000347580		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000546308	ENST00000379853		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000546308	ENST00000265708		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000546308	ENST00000521880		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5CDS-intron	ENST00000546308	ENST00000523181		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000464189	ENST00000347580		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000464189	ENST00000379853		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000464189	ENST00000265708		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5UTR-3CDS	ENST00000464189	ENST00000521880		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
5UTR-intron	ENST00000464189	ENST00000523181		TCGA	RV	LUAD	TCGA-44-8117-01A	HIRA	chr22	19393309	-	ADAM2	chr8	39627094	-
Frame-shit	ENST00000261023	ENST00000286063		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
Frame-shit	ENST00000261023	ENST00000358450		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-intron	ENST00000261023	ENST00000450799		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000261023	ENST00000409504		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-intron	ENST00000261023	ENST00000389683		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000261023	ENST00000449286		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000261023	ENST00000497003		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
Frame-shit	ENST00000374907	ENST00000286063		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
Frame-shit	ENST00000374907	ENST00000358450		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-intron	ENST00000374907	ENST00000450799		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000374907	ENST00000409504		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-intron	ENST00000374907	ENST00000389683		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000374907	ENST00000449286		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000374907	ENST00000497003		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000433736	ENST00000286063		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000433736	ENST00000358450		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-intron	ENST00000433736	ENST00000450799		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000433736	ENST00000409504		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-intron	ENST00000433736	ENST00000389683		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000433736	ENST00000449286		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000433736	ENST00000497003		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000474571	ENST00000286063		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000474571	ENST00000358450		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-intron	ENST00000474571	ENST00000450799		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000474571	ENST00000409504		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-intron	ENST00000474571	ENST00000389683		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000474571	ENST00000449286		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000474571	ENST00000497003		TCGA	RV	LUAD	TCGA-44-A4SS-01A	ITGAV	chr2	187455250	+	PDE11A	chr2	178769914	-
In-frame	ENST00000359534	ENST00000313382		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369354		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369356		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000530740		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369359		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369351		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369349		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369347		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
In-frame	ENST00000359534	ENST00000369348		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000524974		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000313431		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000529945		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000479408		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000493130		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000478649		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
5CDS-intron	ENST00000359534	ENST00000369345		TCGA	RV	LUAD	TCGA-91-A4BC-01A	KCNK5	chr6	39196702	-	PDE4DIP	chr1	144994701	-
Frame-shit	ENST00000297591	ENST00000358834		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000297591	ENST00000528052		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000297591	ENST00000534537		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000297591	ENST00000442761		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
5CDS-3UTR	ENST00000297591	ENST00000480870		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
In-frame	ENST00000437199	ENST00000358834		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
In-frame	ENST00000437199	ENST00000528052		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
In-frame	ENST00000437199	ENST00000534537		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
In-frame	ENST00000437199	ENST00000442761		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
5CDS-3UTR	ENST00000437199	ENST00000480870		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000421249	ENST00000358834		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000421249	ENST00000528052		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000421249	ENST00000534537		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000421249	ENST00000442761		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
5CDS-3UTR	ENST00000421249	ENST00000480870		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
intron-3CDS	ENST00000523405	ENST00000358834		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
intron-3CDS	ENST00000523405	ENST00000528052		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
intron-3CDS	ENST00000523405	ENST00000534537		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
intron-3CDS	ENST00000523405	ENST00000442761		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
intron-3UTR	ENST00000523405	ENST00000480870		TCGA	RV	LUAD	TCGA-86-8279-01A	KIAA1429	chr8	95556055	-	PNLIPRP1	chr10	118350642	+
Frame-shit	ENST00000251879	ENST00000377724		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000251879	ENST00000242323		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
5CDS-intron	ENST00000251879	ENST00000483167		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000414202	ENST00000377724		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000414202	ENST00000242323		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
5CDS-intron	ENST00000414202	ENST00000483167		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000381532	ENST00000377724		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000381532	ENST00000242323		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
5CDS-intron	ENST00000381532	ENST00000483167		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000418622	ENST00000377724		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000418622	ENST00000242323		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
5CDS-intron	ENST00000418622	ENST00000483167		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000449720	ENST00000377724		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000449720	ENST00000242323		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
5CDS-intron	ENST00000449720	ENST00000483167		TCGA	RV	LUAD	TCGA-83-5908-01A	KIAA1432	chr9	5656690	+	DCAF10	chr9	37819285	+
Frame-shit	ENST00000320389	ENST00000402775		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	KIF1A	chr2	241682346	-	C2orf54	chr2	241831180	-
Frame-shit	ENST00000320389	ENST00000307486		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	KIF1A	chr2	241682346	-	C2orf54	chr2	241831180	-
Frame-shit	ENST00000320389	ENST00000388934		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	KIF1A	chr2	241682346	-	C2orf54	chr2	241831180	-
In-frame	ENST00000498729	ENST00000402775		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	KIF1A	chr2	241682346	-	C2orf54	chr2	241831180	-
In-frame	ENST00000498729	ENST00000307486		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	KIF1A	chr2	241682346	-	C2orf54	chr2	241831180	-
In-frame	ENST00000498729	ENST00000388934		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	KIF1A	chr2	241682346	-	C2orf54	chr2	241831180	-
Frame-shit	ENST00000558518	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558518	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000558518	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000557933	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000557933	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000455727	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000455727	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000535915	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000535915	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000545707	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000545707	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
Frame-shit	ENST00000558013	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
5CDS-intron	ENST00000558013	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000358026		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000344626		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000429416		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000541122		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000589677		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000444061		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000590574		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000413806		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-3CDS	ENST00000560628	ENST00000450717		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
intron-intron	ENST00000560628	ENST00000538456		TCGA	RV	LUAD	TCGA-49-AAR4-01A	LDLR	chr19	11234020	+	SMARCA4	chr19	11172460	+
In-frame	ENST00000215832	ENST00000317133		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
In-frame	ENST00000215832	ENST00000375741		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000375739		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000370623		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000215832	ENST00000544132		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000215832	ENST00000218789		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000215832	ENST00000375736		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000426073		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000375737		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000375723		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000478679		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000215832	ENST00000483189		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
In-frame	ENST00000398822	ENST00000317133		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
In-frame	ENST00000398822	ENST00000375741		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000375739		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000370623		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000398822	ENST00000544132		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000398822	ENST00000218789		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000398822	ENST00000375736		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000426073		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000375737		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000375723		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000478679		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000398822	ENST00000483189		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
In-frame	ENST00000544786	ENST00000317133		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
In-frame	ENST00000544786	ENST00000375741		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000375739		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000370623		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000544786	ENST00000544132		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000544786	ENST00000218789		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-5UTR	ENST00000544786	ENST00000375736		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000426073		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000375737		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000375723		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000478679		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
5CDS-intron	ENST00000544786	ENST00000483189		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-3CDS	ENST00000491588	ENST00000317133		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-3CDS	ENST00000491588	ENST00000375741		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000375739		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000370623		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-5UTR	ENST00000491588	ENST00000544132		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-5UTR	ENST00000491588	ENST00000218789		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-5UTR	ENST00000491588	ENST00000375736		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000426073		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000375737		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000375723		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000478679		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
intron-intron	ENST00000491588	ENST00000483189		TCGA	RV	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111806252	+
In-frame	ENST00000380934	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000380934	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
In-frame	ENST00000380959	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000380959	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
In-frame	ENST00000380953	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000380953	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
In-frame	ENST00000397575	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000397575	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
In-frame	ENST00000397581	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000397581	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
In-frame	ENST00000397579	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000397579	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
intron-3CDS	ENST00000543693	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
intron-intron	ENST00000543693	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
intron-3CDS	ENST00000380924	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
intron-intron	ENST00000380924	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
In-frame	ENST00000380921	ENST00000380916		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
5CDS-intron	ENST00000380921	ENST00000497966		TCGA	RV	LUAD	TCGA-75-6211-01A	NFIB	chr9	14306988	-	ZDHHC21	chr9	14662324	-
intron-5UTR	ENST00000340950	ENST00000532828		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
intron-intron	ENST00000340950	ENST00000531805		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
intron-intron	ENST00000340950	ENST00000312908		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
intron-5UTR	ENST00000340950	ENST00000527838		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
intron-intron	ENST00000340950	ENST00000586320		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
intron-5UTR	ENST00000340950	ENST00000534363		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000396901	ENST00000532828		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000396901	ENST00000531805		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000396901	ENST00000312908		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000396901	ENST00000527838		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000396901	ENST00000586320		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000396901	ENST00000534363		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5CDS-5UTR	ENST00000352614	ENST00000532828		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5CDS-intron	ENST00000352614	ENST00000531805		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5CDS-intron	ENST00000352614	ENST00000312908		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5CDS-5UTR	ENST00000352614	ENST00000527838		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5CDS-intron	ENST00000352614	ENST00000586320		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5CDS-5UTR	ENST00000352614	ENST00000534363		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000606253	ENST00000532828		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000606253	ENST00000531805		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000606253	ENST00000312908		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000606253	ENST00000527838		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000606253	ENST00000586320		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000606253	ENST00000534363		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000585544	ENST00000532828		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000585544	ENST00000531805		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000585544	ENST00000312908		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000585544	ENST00000527838		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-intron	ENST00000585544	ENST00000586320		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
5UTR-5UTR	ENST00000585544	ENST00000534363		TCGA	RV	LUAD	TCGA-69-A59K-01A	NFKBID	chr19	36389374	-	ZNF585B	chr19	37698156	-
Frame-shit	ENST00000274276	ENST00000409261		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
Frame-shit	ENST00000274276	ENST00000409213		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
Frame-shit	ENST00000274276	ENST00000405974		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
Frame-shit	ENST00000274276	ENST00000317721		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
5CDS-intron	ENST00000274276	ENST00000473859		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
In-frame	ENST00000502536	ENST00000409261		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
In-frame	ENST00000502536	ENST00000409213		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
In-frame	ENST00000502536	ENST00000405974		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
In-frame	ENST00000502536	ENST00000317721		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
5CDS-intron	ENST00000502536	ENST00000473859		TCGA	RV	LUAD	TCGA-44-3918-01B	OSMR	chr5	38886292	+	NCKAP5	chr2	133554302	-
In-frame	ENST00000335512	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335512	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335512	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335512	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335512	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335512	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000335512	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000335512	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-3CDS	ENST00000539837	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-3UTR	ENST00000539837	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-3UTR	ENST00000539837	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-3UTR	ENST00000539837	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-3UTR	ENST00000539837	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-3UTR	ENST00000539837	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-intron	ENST00000539837	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5UTR-intron	ENST00000539837	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-3CDS	ENST00000470987	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-3UTR	ENST00000470987	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-3UTR	ENST00000470987	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-3UTR	ENST00000470987	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-3UTR	ENST00000470987	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-3UTR	ENST00000470987	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-intron	ENST00000470987	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
3UTR-intron	ENST00000470987	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
In-frame	ENST00000291539	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291539	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291539	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291539	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291539	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000291539	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000291539	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000291539	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
In-frame	ENST00000398236	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398236	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398236	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398236	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398236	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398236	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398236	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398236	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000398229	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398229	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398229	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398229	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398229	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398229	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398229	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398229	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000398234	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398234	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398234	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398234	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398234	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398234	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398234	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398234	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000398232	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398232	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398232	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398232	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398232	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398232	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398232	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398232	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000398227	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398227	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398227	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398227	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398227	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398227	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398227	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398227	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000398225	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398225	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398225	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398225	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398225	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398225	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398225	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398225	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
In-frame	ENST00000380328	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380328	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380328	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380328	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380328	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000380328	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000380328	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000380328	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
In-frame	ENST00000328862	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000328862	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000328862	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000328862	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000328862	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000328862	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000328862	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000328862	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
In-frame	ENST00000335440	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335440	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335440	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335440	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335440	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000335440	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000335440	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000335440	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000398224	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398224	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398224	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398224	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398224	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000398224	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398224	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000398224	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
In-frame	ENST00000349112	ENST00000398457		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000349112	ENST00000462050		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000349112	ENST00000347800		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000349112	ENST00000398449		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000349112	ENST00000361802		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000349112	ENST00000343687		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000349112	ENST00000398437		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000349112	ENST00000340588		TCGA	RV	LUAD	TCGA-50-5941-01A	PDE9A	chr21	44073993	+	ABCG1	chr21	43645781	+
Frame-shit	ENST00000477593	ENST00000357716		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000477593	ENST00000486284		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000477593	ENST00000389336		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000477593	ENST00000402647		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000477593	ENST00000403881		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
5CDS-3UTR	ENST00000477593	ENST00000458641		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
intron-3CDS	ENST00000544716	ENST00000357716		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
intron-3CDS	ENST00000544716	ENST00000486284		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
intron-3CDS	ENST00000544716	ENST00000389336		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
intron-3CDS	ENST00000544716	ENST00000402647		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
intron-3CDS	ENST00000544716	ENST00000403881		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
intron-3UTR	ENST00000544716	ENST00000458641		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000289153	ENST00000357716		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000289153	ENST00000486284		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000289153	ENST00000389336		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000289153	ENST00000402647		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000289153	ENST00000403881		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
5CDS-3UTR	ENST00000289153	ENST00000458641		TCGA	RV	LUAD	TCGA-73-A9RS-01A	PIK3CB	chr3	138474596	-	GRM7	chr3	7620109	+
Frame-shit	ENST00000409426	ENST00000368926		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
5CDS-3UTR	ENST00000409426	ENST00000465135		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
Frame-shit	ENST00000441902	ENST00000368926		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
5CDS-3UTR	ENST00000441902	ENST00000465135		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
Frame-shit	ENST00000368890	ENST00000368926		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
5CDS-3UTR	ENST00000368890	ENST00000465135		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
Frame-shit	ENST00000368888	ENST00000368926		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
5CDS-3UTR	ENST00000368888	ENST00000465135		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
intron-3CDS	ENST00000464105	ENST00000368926		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
intron-3UTR	ENST00000464105	ENST00000465135		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
intron-3CDS	ENST00000414290	ENST00000368926		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
intron-3UTR	ENST00000414290	ENST00000465135		TCGA	RV	LUAD	TCGA-86-8673-01A	PIP5K1A	chr1	151199876	+	C1orf56	chr1	151022914	+
In-frame	ENST00000369682	ENST00000369915		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
5CDS-5UTR	ENST00000369682	ENST00000217905		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
5CDS-5UTR	ENST00000369682	ENST00000369912		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
5CDS-intron	ENST00000369682	ENST00000482044		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
3UTR-3CDS	ENST00000493546	ENST00000369915		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
3UTR-5UTR	ENST00000493546	ENST00000217905		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
3UTR-5UTR	ENST00000493546	ENST00000369912		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
3UTR-intron	ENST00000493546	ENST00000482044		TCGA	RV	LUAD	TCGA-55-A493-01A	PLXNA3	chrX	153698954	+	TKTL1	chrX	153533656	+
5CDS-intron	ENST00000359337	ENST00000367545		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000359337	ENST00000367526		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000359337	ENST00000480333		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000449103	ENST00000367545		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000449103	ENST00000367526		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000449103	ENST00000480333		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
intron-intron	ENST00000496720	ENST00000367545		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
intron-intron	ENST00000496720	ENST00000367526		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
intron-intron	ENST00000496720	ENST00000480333		TCGA	RV	LUAD	TCGA-75-7031-01A	PLXNB2	chr22	50713408	-	UTRN	chr6	144665237	+
In-frame	ENST00000338368	ENST00000399231		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000338368	ENST00000356338		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000338368	ENST00000358212		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000338368	ENST00000399233		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000338368	ENST00000553916		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000314191	ENST00000399231		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000314191	ENST00000356338		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000314191	ENST00000358212		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000314191	ENST00000399233		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000314191	ENST00000553916		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
5UTR-3CDS	ENST00000523565	ENST00000399231		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
5UTR-3CDS	ENST00000523565	ENST00000356338		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
5UTR-3CDS	ENST00000523565	ENST00000358212		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
5UTR-3CDS	ENST00000523565	ENST00000399233		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
5UTR-3CDS	ENST00000523565	ENST00000553916		TCGA	RV	LUAD	TCGA-86-7713-01A	PRKDC	chr8	48730011	-	MYO5A	chr15	52667657	-
In-frame	ENST00000355680	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000355680	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000397638	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000397638	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000291705	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000291705	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000458387	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000458387	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000451211	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000451211	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000397637	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000397637	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000334494	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000334494	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000397628	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000397628	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000440086	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
In-frame	ENST00000440086	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
3UTR-3CDS	ENST00000491389	ENST00000505286		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
3UTR-3CDS	ENST00000491389	ENST00000306200		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PRMT2	chr21	48068531	+	STX18	chr4	4473433	-
5UTR-3CDS	ENST00000324862	ENST00000368985		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000324862	ENST00000448301		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-5UTR	ENST00000324862	ENST00000480760		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000543398	ENST00000368985		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000543398	ENST00000448301		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-5UTR	ENST00000543398	ENST00000480760		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000414970	ENST00000368985		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-3CDS	ENST00000414970	ENST00000448301		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
5UTR-5UTR	ENST00000414970	ENST00000480760		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000467329	ENST00000368985		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000467329	ENST00000448301		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
intron-5UTR	ENST00000467329	ENST00000480760		TCGA	RV	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000419071	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
intron-3CDS	ENST00000419071	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
Frame-shit	ENST00000268835	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
Frame-shit	ENST00000268835	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
5UTR-3CDS	ENST00000536323	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
5UTR-3CDS	ENST00000536323	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
Frame-shit	ENST00000542013	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
Frame-shit	ENST00000542013	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
intron-3CDS	ENST00000575337	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
intron-3CDS	ENST00000575337	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6145-01A	PRPSAP2	chr17	18775962	+	EEPD1	chr7	36320724	+
Frame-shit	ENST00000329286	ENST00000400556		TCGA	RV	LUAD	TCGA-44-3918-01A	RAB12	chr18	8609951	+	PPP4R1	chr18	9577189	-
Frame-shit	ENST00000329286	ENST00000400555		TCGA	RV	LUAD	TCGA-44-3918-01A	RAB12	chr18	8609951	+	PPP4R1	chr18	9577189	-
5CDS-5UTR	ENST00000329286	ENST00000580583		TCGA	RV	LUAD	TCGA-44-3918-01A	RAB12	chr18	8609951	+	PPP4R1	chr18	9577189	-
In-frame	ENST00000522208	ENST00000361132		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000522208	ENST00000393371		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000522208	ENST00000522500		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
5CDS-intron	ENST00000522208	ENST00000519883		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000521389	ENST00000361132		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000521389	ENST00000393371		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000521389	ENST00000522500		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
5CDS-intron	ENST00000521389	ENST00000519883		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000261947	ENST00000361132		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000261947	ENST00000393371		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
In-frame	ENST00000261947	ENST00000522500		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
5CDS-intron	ENST00000261947	ENST00000519883		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
intron-3CDS	ENST00000520564	ENST00000361132		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
intron-3CDS	ENST00000520564	ENST00000393371		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
intron-3CDS	ENST00000520564	ENST00000522500		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
intron-intron	ENST00000520564	ENST00000519883		TCGA	RV	LUAD	TCGA-49-4505-01A	RNF130	chr5	179498456	-	RASGEF1C	chr5	179538580	-
5CDS-intron	ENST00000373710	ENST00000371754		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373710	ENST00000469991		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373710	ENST00000371752		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373710	ENST00000396105		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000536859	ENST00000371754		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000536859	ENST00000469991		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000536859	ENST00000371752		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000536859	ENST00000396105		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373709	ENST00000371754		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373709	ENST00000469991		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373709	ENST00000371752		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373709	ENST00000396105		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000536384	ENST00000371754		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000536384	ENST00000469991		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000536384	ENST00000371752		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000536384	ENST00000396105		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000491976	ENST00000371754		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000491976	ENST00000469991		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000491976	ENST00000371752		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000491976	ENST00000396105		TCGA	RV	LUAD	TCGA-05-4396-01A	SERINC2	chr1	31907521	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000440909	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000440909	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000440909	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000448921	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000448921	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000448921	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000437397	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000437397	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000437397	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000355814	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000355814	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000355814	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000393087	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000393087	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000393087	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000393088	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000393088	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000393088	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000404814	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000404814	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000404814	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000449399	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000449399	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000449399	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000402629	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000402629	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000402629	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555289	ENST00000360359		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555289	ENST00000535627		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000555289	ENST00000470698		TCGA	RV	LUAD	TCGA-50-6673-01A	SERPINA1	chr14	94844686	-	ANKS1A	chr6	34977682	+
In-frame	ENST00000521198	ENST00000246662		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
5CDS-5UTR	ENST00000521198	ENST00000588431		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
In-frame	ENST00000522398	ENST00000246662		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
5CDS-5UTR	ENST00000522398	ENST00000588431		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
In-frame	ENST00000520976	ENST00000246662		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
5CDS-5UTR	ENST00000520976	ENST00000588431		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
In-frame	ENST00000396596	ENST00000246662		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
5CDS-5UTR	ENST00000396596	ENST00000588431		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
In-frame	ENST00000345714	ENST00000246662		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
5CDS-5UTR	ENST00000345714	ENST00000588431		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
intron-3CDS	ENST00000521435	ENST00000246662		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
intron-5UTR	ENST00000521435	ENST00000588431		TCGA	RV	LUAD	TCGA-55-7907-01A	SGK3	chr8	67743546	+	KRT9	chr17	39726472	-
In-frame	ENST00000449833	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000449833	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000449833	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000449833	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000449833	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000409161	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000409161	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000409161	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000409161	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000409161	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000423696	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000423696	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000423696	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000423696	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000423696	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000338508	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000338508	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000338508	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000338508	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000338508	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000409530	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000409530	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000409530	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000409530	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000409530	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000449116	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000449116	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000449116	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000449116	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000449116	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000357171	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
In-frame	ENST00000357171	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000357171	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-intron	ENST00000357171	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
5CDS-5UTR	ENST00000357171	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
intron-3CDS	ENST00000468619	ENST00000396231		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
intron-3CDS	ENST00000468619	ENST00000262726		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
intron-intron	ENST00000468619	ENST00000358439		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
intron-intron	ENST00000468619	ENST00000356087		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
intron-5UTR	ENST00000468619	ENST00000461800		TCGA	RV	LUAD	TCGA-86-8673-01A	SHANK2	chr11	70505933	-	EFCAB6	chr22	43936237	-
Frame-shit	ENST00000338244	ENST00000566044		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000338244	ENST00000455779		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000338244	ENST00000299167		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000338244	ENST00000323584		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5CDS-intron	ENST00000338244	ENST00000567402		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000379333	ENST00000566044		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000379333	ENST00000455779		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000379333	ENST00000299167		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
Frame-shit	ENST00000379333	ENST00000323584		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5CDS-intron	ENST00000379333	ENST00000567402		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
intron-3CDS	ENST00000424750	ENST00000566044		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
intron-3CDS	ENST00000424750	ENST00000455779		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
intron-3CDS	ENST00000424750	ENST00000299167		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
intron-3CDS	ENST00000424750	ENST00000323584		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
intron-intron	ENST00000424750	ENST00000567402		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5UTR-3CDS	ENST00000468355	ENST00000566044		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5UTR-3CDS	ENST00000468355	ENST00000455779		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5UTR-3CDS	ENST00000468355	ENST00000299167		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5UTR-3CDS	ENST00000468355	ENST00000323584		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
5UTR-intron	ENST00000468355	ENST00000567402		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC23A2	chr20	4864288	-	PHKB	chr16	47674946	+
In-frame	ENST00000274192	ENST00000274181		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5CDS-intron	ENST00000274192	ENST00000511368		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5CDS-intron	ENST00000274192	ENST00000513709		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
Frame-shit	ENST00000537411	ENST00000274181		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5CDS-intron	ENST00000537411	ENST00000511368		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5CDS-intron	ENST00000537411	ENST00000513709		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
3UTR-3CDS	ENST00000504286	ENST00000274181		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
3UTR-intron	ENST00000504286	ENST00000511368		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
3UTR-intron	ENST00000504286	ENST00000513709		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
Frame-shit	ENST00000538824	ENST00000274181		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5CDS-intron	ENST00000538824	ENST00000511368		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5CDS-intron	ENST00000538824	ENST00000513709		TCGA	RV	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303381	+
5UTR-3CDS	ENST00000336308	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000336308	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000336308	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000336308	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000336308	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000336308	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
3UTR-3CDS	ENST00000578232	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
3UTR-3CDS	ENST00000578232	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
3UTR-3CDS	ENST00000578232	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
3UTR-3CDS	ENST00000578232	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
3UTR-3CDS	ENST00000578232	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
3UTR-3CDS	ENST00000578232	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000544210	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000544210	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000544210	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000544210	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000544210	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000544210	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000394250	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000394250	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000394250	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000394250	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000394250	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000394250	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000580611	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000580611	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000580611	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000580611	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000580611	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000580611	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	STARD3	chr17	37793484	+	GSDMB	chr17	38061217	-
5UTR-3CDS	ENST00000354618	ENST00000372259		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-3CDS	ENST00000354618	ENST00000372257		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-3CDS	ENST00000354618	ENST00000537474		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-5UTR	ENST00000354618	ENST00000495828		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-3CDS	ENST00000469141	ENST00000372259		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-3CDS	ENST00000469141	ENST00000372257		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-3CDS	ENST00000469141	ENST00000537474		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
5UTR-5UTR	ENST00000469141	ENST00000495828		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
intron-3CDS	ENST00000466743	ENST00000372259		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
intron-3CDS	ENST00000466743	ENST00000372257		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
intron-3CDS	ENST00000466743	ENST00000537474		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
intron-5UTR	ENST00000466743	ENST00000495828		TCGA	RV	LUAD	TCGA-71-8520-01A	THRAP3	chr1	36690106	+	ERI3	chr1	44778900	-
In-frame	ENST00000505747	ENST00000404666		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000505747	ENST00000295156		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000505747	ENST00000406397		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5CDS-intron	ENST00000505747	ENST00000483921		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000260619	ENST00000404666		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000260619	ENST00000295156		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000260619	ENST00000406397		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5CDS-intron	ENST00000260619	ENST00000483921		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000454352	ENST00000404666		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000454352	ENST00000295156		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
In-frame	ENST00000454352	ENST00000406397		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5CDS-intron	ENST00000454352	ENST00000483921		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5UTR-3CDS	ENST00000403537	ENST00000404666		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5UTR-3CDS	ENST00000403537	ENST00000295156		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5UTR-3CDS	ENST00000403537	ENST00000406397		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
5UTR-intron	ENST00000403537	ENST00000483921		TCGA	RV	LUAD	TCGA-55-A4DG-01A	THUMPD2	chr2	40006254	-	VSNL1	chr2	17830677	+
Frame-shit	ENST00000590602	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000590602	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5CDS-intron	ENST00000590602	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5UTR-3CDS	ENST00000322933	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5UTR-3CDS	ENST00000322933	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5UTR-intron	ENST00000322933	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
intron-3CDS	ENST00000592076	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
intron-3CDS	ENST00000592076	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
intron-intron	ENST00000592076	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
In-frame	ENST00000392467	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
In-frame	ENST00000392467	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5CDS-intron	ENST00000392467	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000322914	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000322914	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5CDS-intron	ENST00000322914	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000306591	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000306591	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5CDS-intron	ENST00000306591	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
intron-3CDS	ENST00000591436	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
intron-3CDS	ENST00000591436	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
intron-intron	ENST00000591436	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000589553	ENST00000389840		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000589553	ENST00000585328		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
5CDS-intron	ENST00000589553	ENST00000586052		TCGA	RV	LUAD	TCGA-44-7660-01A	TMC6	chr17	76120070	-	DNAH17	chr17	76496543	-
Frame-shit	ENST00000407228	ENST00000372852		TCGA	RV	LUAD	TCGA-97-8177-01A	TOX3	chr16	52497846	-	HEYL	chr1	40098387	-
5CDS-5UTR	ENST00000407228	ENST00000535435		TCGA	RV	LUAD	TCGA-97-8177-01A	TOX3	chr16	52497846	-	HEYL	chr1	40098387	-
Frame-shit	ENST00000219746	ENST00000372852		TCGA	RV	LUAD	TCGA-97-8177-01A	TOX3	chr16	52497846	-	HEYL	chr1	40098387	-
5CDS-5UTR	ENST00000219746	ENST00000535435		TCGA	RV	LUAD	TCGA-97-8177-01A	TOX3	chr16	52497846	-	HEYL	chr1	40098387	-
Frame-shit	ENST00000389327	ENST00000276616		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
5CDS-intron	ENST00000389327	ENST00000517981		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
Frame-shit	ENST00000389328	ENST00000276616		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
5CDS-intron	ENST00000389328	ENST00000517981		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
Frame-shit	ENST00000438773	ENST00000276616		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
5CDS-intron	ENST00000438773	ENST00000517981		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
intron-3CDS	ENST00000522504	ENST00000276616		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
intron-intron	ENST00000522504	ENST00000517981		TCGA	RV	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87060996	-
In-frame	ENST00000334379	ENST00000229633		TCGA	RV	LUAD	TCGA-05-5423-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
In-frame	ENST00000368332	ENST00000229633		TCGA	RV	LUAD	TCGA-05-5423-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
In-frame	ENST00000450358	ENST00000229633		TCGA	RV	LUAD	TCGA-05-5423-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
intron-3CDS	ENST00000489934	ENST00000229633		TCGA	RV	LUAD	TCGA-05-5423-01A	TRMT11	chr6	126307768	+	HINT3	chr6	126288033	+
intron-3CDS	ENST00000395571	ENST00000287394		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
intron-3CDS	ENST00000395571	ENST00000521903		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
intron-intron	ENST00000395571	ENST00000534257		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
5UTR-3CDS	ENST00000297857	ENST00000287394		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
5UTR-3CDS	ENST00000297857	ENST00000521903		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
5UTR-intron	ENST00000297857	ENST00000534257		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
intron-3CDS	ENST00000522655	ENST00000287394		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
intron-3CDS	ENST00000522655	ENST00000521903		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
intron-intron	ENST00000522655	ENST00000534257		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
5UTR-3CDS	ENST00000522595	ENST00000287394		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
5UTR-3CDS	ENST00000522595	ENST00000521903		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
5UTR-intron	ENST00000522595	ENST00000534257		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ZHX1	chr8	124286362	-	ATAD2	chr8	124351686	-
Frame-shit	ENST00000267339	ENST00000356711		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000267339	ENST00000251041		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000267339	ENST00000357550		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000267339	ENST00000457511		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5CDS-intron	ENST00000267339	ENST00000467639		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
3UTR-3CDS	ENST00000375758	ENST00000356711		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
3UTR-intron	ENST00000375758	ENST00000251041		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
3UTR-intron	ENST00000375758	ENST00000357550		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
3UTR-intron	ENST00000375758	ENST00000457511		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
3UTR-intron	ENST00000375758	ENST00000467639		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5UTR-3CDS	ENST00000489973	ENST00000356711		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000489973	ENST00000251041		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000489973	ENST00000357550		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000489973	ENST00000457511		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
5UTR-intron	ENST00000489973	ENST00000467639		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
intron-3CDS	ENST00000310847	ENST00000356711		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
intron-intron	ENST00000310847	ENST00000251041		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
intron-intron	ENST00000310847	ENST00000357550		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
intron-intron	ENST00000310847	ENST00000457511		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
intron-intron	ENST00000310847	ENST00000467639		TCGA	RV	LUAD	TCGA-86-7955-01A	ANKRD10	chr13	111545375	-	MYO16	chr13	109772718	+
Frame-shit	ENST00000358595	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000358595	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
5CDS-intron	ENST00000358595	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000354396	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000354396	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
5CDS-intron	ENST00000354396	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000515192	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000515192	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
5CDS-intron	ENST00000515192	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000505755	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000505755	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
5CDS-intron	ENST00000505755	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
intron-3CDS	ENST00000468970	ENST00000367796		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
intron-3CDS	ENST00000468970	ENST00000367797		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
intron-intron	ENST00000468970	ENST00000546081		TCGA	RV	LUAD	TCGA-78-7146-01A	ARNT	chr1	150825238	-	F5	chr1	169494146	-
Frame-shit	ENST00000306279	ENST00000263863		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
Frame-shit	ENST00000306279	ENST00000524600		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000306279	ENST00000533041		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000306279	ENST00000409696		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
3UTR-3CDS	ENST00000463422	ENST00000263863		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
3UTR-3CDS	ENST00000463422	ENST00000524600		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
3UTR-3UTR	ENST00000463422	ENST00000533041		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
3UTR-3UTR	ENST00000463422	ENST00000409696		TCGA	RV	LUAD	TCGA-86-8673-01A	ATOH8	chr2	85982080	+	GNLY	chr2	85922443	+
Frame-shit	ENST00000283558	ENST00000356049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000375630	ENST00000356049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000487903	ENST00000356049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
Frame-shit	ENST00000375645	ENST00000356049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
intron-3CDS	ENST00000419448	ENST00000356049		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ATP11A	chr13	113439571	+	C13orf35	chr13	113337588	+
5UTR-3CDS	ENST00000244769	ENST00000368087		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
5UTR-3CDS	ENST00000244769	ENST00000356962		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
5UTR-3UTR	ENST00000244769	ENST00000498260		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
5UTR-3CDS	ENST00000436367	ENST00000368087		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
5UTR-3CDS	ENST00000436367	ENST00000356962		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
5UTR-3UTR	ENST00000436367	ENST00000498260		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
intron-3CDS	ENST00000467008	ENST00000368087		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
intron-3CDS	ENST00000467008	ENST00000356962		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
intron-3UTR	ENST00000467008	ENST00000498260		TCGA	RV	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131900251	+
Frame-shit	ENST00000378618	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000378618	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
5UTR-3CDS	ENST00000536126	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
5UTR-3CDS	ENST00000536126	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000278460	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000278460	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000395460	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000395460	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000378615	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
Frame-shit	ENST00000378615	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
In-frame	ENST00000543718	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
In-frame	ENST00000543718	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
intron-3CDS	ENST00000527268	ENST00000311907		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
intron-3CDS	ENST00000527268	ENST00000530231		TCGA	RV	LUAD	TCGA-69-7979-01A	C11orf49	chr11	47008861	+	F2	chr11	46747409	+
In-frame	ENST00000222005	ENST00000262809		TCGA	RV	LUAD	TCGA-05-4426-01A	CDC37	chr19	10514054	-	ELL	chr19	18583692	-
5CDS-5UTR	ENST00000222005	ENST00000596124		TCGA	RV	LUAD	TCGA-05-4426-01A	CDC37	chr19	10514054	-	ELL	chr19	18583692	-
intron-3CDS	ENST00000366542	ENST00000355875		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366542	ENST00000366541		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366542	ENST00000343783		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366542	ENST00000391846		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3UTR	ENST00000366542	ENST00000496361		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366543	ENST00000355875		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366543	ENST00000366541		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366543	ENST00000343783		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366543	ENST00000391846		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3UTR	ENST00000366543	ENST00000496361		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366544	ENST00000355875		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366544	ENST00000366541		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366544	ENST00000343783		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000366544	ENST00000391846		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3UTR	ENST00000366544	ENST00000496361		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000468254	ENST00000355875		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000468254	ENST00000366541		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000468254	ENST00000343783		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000468254	ENST00000391846		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3UTR	ENST00000468254	ENST00000496361		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000481987	ENST00000355875		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000481987	ENST00000366541		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000481987	ENST00000343783		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000481987	ENST00000391846		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3UTR	ENST00000481987	ENST00000496361		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000490813	ENST00000355875		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000490813	ENST00000366541		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000490813	ENST00000343783		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000490813	ENST00000391846		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3UTR	ENST00000490813	ENST00000496361		TCGA	RV	LUAD	TCGA-73-4662-01A	CEP170	chr1	243418349	-	SDCCAG8	chr1	243468015	+
intron-3CDS	ENST00000546079	ENST00000291439		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000546079	ENST00000541844		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000546079	ENST00000590756		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000546079	ENST00000429941		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000546079	ENST00000444449		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000541297	ENST00000291439		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000541297	ENST00000541844		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000541297	ENST00000590756		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000541297	ENST00000429941		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000541297	ENST00000444449		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
In-frame	ENST00000337392	ENST00000291439		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
In-frame	ENST00000337392	ENST00000541844		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
In-frame	ENST00000337392	ENST00000590756		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
In-frame	ENST00000337392	ENST00000429941		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
In-frame	ENST00000337392	ENST00000444449		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000589158	ENST00000291439		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000589158	ENST00000541844		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000589158	ENST00000590756		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000589158	ENST00000429941		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-3CDS	ENST00000589158	ENST00000444449		TCGA	RV	LUAD	TCGA-55-6972-01A	CLPTM1	chr19	45458724	+	AP1M1	chr19	16337232	+
intron-5UTR	ENST00000585509	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000585509	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-intron	ENST00000585509	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-intron	ENST00000585509	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000585509	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000585509	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000589297	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000589297	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-intron	ENST00000589297	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-intron	ENST00000589297	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000589297	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000589297	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000591455	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000591455	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000591455	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000591455	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000591455	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000591455	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000446868	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000446868	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000446868	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000446868	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000446868	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000446868	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000361101	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000361101	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000361101	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000361101	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000361101	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000361101	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000589296	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000589296	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000589296	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-intron	ENST00000589296	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000589296	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
5CDS-5UTR	ENST00000589296	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000586175	ENST00000542802		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000586175	ENST00000312010		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-intron	ENST00000586175	ENST00000449938		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-intron	ENST00000586175	ENST00000588467		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000586175	ENST00000589424		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
intron-5UTR	ENST00000586175	ENST00000590546		TCGA	RV	LUAD	TCGA-38-4630-01A	CYTH1	chr17	76778284	-	USP36	chr17	76834832	-
Frame-shit	ENST00000302243	ENST00000353782		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000302243	ENST00000356608		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000302243	ENST00000394747		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000302243	ENST00000394748		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000302243	ENST00000537808		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000302243	ENST00000565329		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
3UTR-3CDS	ENST00000562509	ENST00000353782		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
3UTR-intron	ENST00000562509	ENST00000356608		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
3UTR-intron	ENST00000562509	ENST00000394747		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
3UTR-intron	ENST00000562509	ENST00000394748		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
3UTR-intron	ENST00000562509	ENST00000537808		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
3UTR-intron	ENST00000562509	ENST00000565329		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
Frame-shit	ENST00000417604	ENST00000353782		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000417604	ENST00000356608		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000417604	ENST00000394747		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000417604	ENST00000394748		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000417604	ENST00000537808		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
5CDS-intron	ENST00000417604	ENST00000565329		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
intron-3CDS	ENST00000443119	ENST00000353782		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
intron-intron	ENST00000443119	ENST00000356608		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
intron-intron	ENST00000443119	ENST00000394747		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
intron-intron	ENST00000443119	ENST00000394748		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
intron-intron	ENST00000443119	ENST00000537808		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
intron-intron	ENST00000443119	ENST00000565329		TCGA	RV	LUAD	TCGA-91-6847-01A	DDX19A	chr16	70384508	+	ABCC11	chr16	48269088	-
In-frame	ENST00000602402	ENST00000376873		TCGA	RV	LUAD	TCGA-44-4112-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000602402	ENST00000299339		TCGA	RV	LUAD	TCGA-44-4112-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000602402	ENST00000376855		TCGA	RV	LUAD	TCGA-44-4112-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000376795	ENST00000376873		TCGA	RV	LUAD	TCGA-44-4112-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000376795	ENST00000299339		TCGA	RV	LUAD	TCGA-44-4112-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000376795	ENST00000376855		TCGA	RV	LUAD	TCGA-44-4112-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
Frame-shit	ENST00000321685	ENST00000441250		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	64001452	+	NUDT22	chr11	63996719	+
Frame-shit	ENST00000321685	ENST00000279206		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	64001452	+	NUDT22	chr11	63996719	+
3UTR-3CDS	ENST00000355040	ENST00000441250		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	64001452	+	NUDT22	chr11	63996719	+
3UTR-3CDS	ENST00000355040	ENST00000279206		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	64001452	+	NUDT22	chr11	63996719	+
In-frame	ENST00000321460	ENST00000441250		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	64001452	+	NUDT22	chr11	63996719	+
In-frame	ENST00000321460	ENST00000279206		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	64001452	+	NUDT22	chr11	63996719	+
In-frame	ENST00000266517	ENST00000442111		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000266517	ENST00000281703		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000266517	ENST00000537468		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000266517	ENST00000542193		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000335148	ENST00000442111		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000335148	ENST00000281703		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000335148	ENST00000537468		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000335148	ENST00000542193		TCGA	RV	LUAD	TCGA-05-4434-01A	ETNK1	chr12	22778520	+	GLT1D1	chr12	129429871	+
In-frame	ENST00000337318	ENST00000222249		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM53B	chr10	126370176	-	KCNN1	chr19	18099224	+
5CDS-intron	ENST00000337318	ENST00000594192		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM53B	chr10	126370176	-	KCNN1	chr19	18099224	+
Frame-shit	ENST00000392754	ENST00000222249		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM53B	chr10	126370176	-	KCNN1	chr19	18099224	+
5CDS-intron	ENST00000392754	ENST00000594192		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM53B	chr10	126370176	-	KCNN1	chr19	18099224	+
In-frame	ENST00000280780	ENST00000222249		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM53B	chr10	126370176	-	KCNN1	chr19	18099224	+
5CDS-intron	ENST00000280780	ENST00000594192		TCGA	RV	LUAD	TCGA-44-7670-01A	FAM53B	chr10	126370176	-	KCNN1	chr19	18099224	+
Frame-shit	ENST00000586717	ENST00000358691		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
Frame-shit	ENST00000586717	ENST00000580168		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
5CDS-intron	ENST00000586717	ENST00000580662		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
Frame-shit	ENST00000319129	ENST00000358691		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
Frame-shit	ENST00000319129	ENST00000580168		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
5CDS-intron	ENST00000319129	ENST00000580662		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
Frame-shit	ENST00000389570	ENST00000358691		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
Frame-shit	ENST00000389570	ENST00000580168		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
5CDS-intron	ENST00000389570	ENST00000580662		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
intron-3CDS	ENST00000586631	ENST00000358691		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
intron-3CDS	ENST00000586631	ENST00000580168		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
intron-intron	ENST00000586631	ENST00000580662		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
intron-3CDS	ENST00000588478	ENST00000358691		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
intron-3CDS	ENST00000588478	ENST00000580168		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
intron-intron	ENST00000588478	ENST00000580662		TCGA	RV	LUAD	TCGA-78-7146-01A	FBF1	chr17	73933647	-	HELZ	chr17	65134230	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
3UTR-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1803470	+	TACC3	chr4	1746245	+
In-frame	ENST00000599564	ENST00000484218		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000599564	ENST00000479340		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000599564	ENST00000338897		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
In-frame	ENST00000317991	ENST00000484218		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000317991	ENST00000479340		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000317991	ENST00000338897		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5UTR-3CDS	ENST00000504615	ENST00000484218		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5UTR-5UTR	ENST00000504615	ENST00000479340		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5UTR-5UTR	ENST00000504615	ENST00000338897		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
In-frame	ENST00000411896	ENST00000484218		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000411896	ENST00000479340		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000411896	ENST00000338897		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
In-frame	ENST00000424536	ENST00000484218		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000424536	ENST00000479340		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
5CDS-5UTR	ENST00000424536	ENST00000338897		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
3UTR-3CDS	ENST00000598073	ENST00000484218		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
3UTR-5UTR	ENST00000598073	ENST00000479340		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
3UTR-5UTR	ENST00000598073	ENST00000338897		TCGA	RV	LUAD	TCGA-L9-A8F4-01A	GRAMD1A	chr19	35500233	+	KRTDAP	chr19	35978661	-
In-frame	ENST00000406875	ENST00000072869		TCGA	RV	LUAD	TCGA-78-7154-01A	HIPK2	chr7	139477404	-	ADCK2	chr7	140374411	+
In-frame	ENST00000406875	ENST00000476491		TCGA	RV	LUAD	TCGA-78-7154-01A	HIPK2	chr7	139477404	-	ADCK2	chr7	140374411	+
In-frame	ENST00000428878	ENST00000072869		TCGA	RV	LUAD	TCGA-78-7154-01A	HIPK2	chr7	139477404	-	ADCK2	chr7	140374411	+
In-frame	ENST00000428878	ENST00000476491		TCGA	RV	LUAD	TCGA-78-7154-01A	HIPK2	chr7	139477404	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000342645	ENST00000072869		TCGA	RV	LUAD	TCGA-78-7154-01A	HIPK2	chr7	139477404	-	ADCK2	chr7	140374411	+
intron-3CDS	ENST00000342645	ENST00000476491		TCGA	RV	LUAD	TCGA-78-7154-01A	HIPK2	chr7	139477404	-	ADCK2	chr7	140374411	+
5CDS-3UTR	ENST00000374864	ENST00000371497		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000374864	ENST00000603338		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000374864	ENST00000329613		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000535650	ENST00000371497		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000535650	ENST00000603338		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000535650	ENST00000329613		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000262650	ENST00000371497		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000262650	ENST00000603338		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000262650	ENST00000329613		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000483727	ENST00000371497		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000483727	ENST00000603338		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000483727	ENST00000329613		TCGA	RV	LUAD	TCGA-86-7955-01A	ITCH	chr20	33012331	+	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000377967	ENST00000523374		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
In-frame	ENST00000377967	ENST00000414387		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
5CDS-5UTR	ENST00000377967	ENST00000518795		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
Frame-shit	ENST00000382899	ENST00000523374		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
In-frame	ENST00000382899	ENST00000414387		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
5CDS-5UTR	ENST00000382899	ENST00000518795		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
Frame-shit	ENST00000536777	ENST00000523374		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
In-frame	ENST00000536777	ENST00000414387		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
5CDS-5UTR	ENST00000536777	ENST00000518795		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
Frame-shit	ENST00000543216	ENST00000523374		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
In-frame	ENST00000543216	ENST00000414387		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
5CDS-5UTR	ENST00000543216	ENST00000518795		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
intron-3CDS	ENST00000479423	ENST00000523374		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
intron-3CDS	ENST00000479423	ENST00000414387		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
intron-5UTR	ENST00000479423	ENST00000518795		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	ZNF674	chrX	46360770	-
5CDS-intron	ENST00000377093	ENST00000376637		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377093	ENST00000400895		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377093	ENST00000491346		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377093	ENST00000376629		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377093	ENST00000376627		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377093	ENST00000314340		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377093	ENST00000452018		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377093	ENST00000510878		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000263934	ENST00000376637		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000263934	ENST00000400895		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000263934	ENST00000491346		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000263934	ENST00000376629		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000263934	ENST00000376627		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000263934	ENST00000314340		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000263934	ENST00000452018		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000263934	ENST00000510878		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377086	ENST00000376637		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377086	ENST00000400895		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377086	ENST00000491346		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377086	ENST00000376629		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377086	ENST00000376627		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377086	ENST00000314340		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377086	ENST00000452018		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377086	ENST00000510878		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377083	ENST00000376637		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377083	ENST00000400895		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377083	ENST00000491346		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377083	ENST00000376629		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377083	ENST00000376627		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377083	ENST00000314340		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377083	ENST00000452018		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377083	ENST00000510878		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377081	ENST00000376637		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-intron	ENST00000377081	ENST00000400895		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377081	ENST00000491346		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377081	ENST00000376629		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377081	ENST00000376627		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377081	ENST00000314340		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377081	ENST00000452018		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
5CDS-3UTR	ENST00000377081	ENST00000510878		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-intron	ENST00000465635	ENST00000376637		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-intron	ENST00000465635	ENST00000400895		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-3UTR	ENST00000465635	ENST00000491346		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-3UTR	ENST00000465635	ENST00000376629		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-3UTR	ENST00000465635	ENST00000376627		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-3UTR	ENST00000465635	ENST00000314340		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-3UTR	ENST00000465635	ENST00000452018		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
intron-3UTR	ENST00000465635	ENST00000510878		TCGA	RV	LUAD	TCGA-78-7153-01A	KIF1B	chr1	10357304	+	AGTRAP	chr1	11805860	+
3UTR-3CDS	ENST00000465039	ENST00000265537		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
3UTR-3CDS	ENST00000465039	ENST00000415258		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
3UTR-3CDS	ENST00000465039	ENST00000414984		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
3UTR-3UTR	ENST00000465039	ENST00000467936		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000440097	ENST00000265537		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000440097	ENST00000415258		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000440097	ENST00000414984		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
5CDS-3UTR	ENST00000440097	ENST00000467936		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000273317	ENST00000265537		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000273317	ENST00000415258		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000273317	ENST00000414984		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
5CDS-3UTR	ENST00000273317	ENST00000467936		TCGA	RV	LUAD	TCGA-78-7147-01A	LIMD1	chr3	45707209	+	LARS2	chr3	45565489	+
In-frame	ENST00000462284	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000462284	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000462284	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000462284	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000356290	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000356290	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000356290	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000356290	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000540827	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000540827	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000540827	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000540827	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000258149	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000258149	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000258149	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000258149	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000428863	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000428863	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000428863	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000428863	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393412	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393412	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393412	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000393412	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000258148	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000258148	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000258148	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000258148	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000544561	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000544561	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000544561	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000544561	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393410	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393410	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393410	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000393410	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393413	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393413	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000393413	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000393413	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000517852	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000517852	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000517852	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000517852	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000545204	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000545204	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000545204	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000545204	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000350057	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000350057	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000350057	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000350057	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000360430	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000360430	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000360430	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000360430	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000299252	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000299252	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000299252	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000299252	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000348801	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000348801	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000348801	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000348801	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000478070	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000478070	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000478070	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000478070	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000544125	ENST00000229179		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000544125	ENST00000378905		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000544125	ENST00000539906		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
intron-intron	ENST00000544125	ENST00000401003		TCGA	RV	LUAD	TCGA-55-8085-01A	MDM2	chr12	69229764	+	NUP107	chr12	69135593	+
In-frame	ENST00000280285	ENST00000265069		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
5CDS-5UTR	ENST00000280285	ENST00000510369		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
In-frame	ENST00000382142	ENST00000265069		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
5CDS-5UTR	ENST00000382142	ENST00000510369		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
In-frame	ENST00000264934	ENST00000265069		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
5CDS-5UTR	ENST00000264934	ENST00000510369		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
intron-3CDS	ENST00000510216	ENST00000265069		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
intron-5UTR	ENST00000510216	ENST00000510369		TCGA	RV	LUAD	TCGA-44-7670-01A	MTMR12	chr5	32312864	-	ZFR	chr5	32364381	-
5CDS-3UTR	ENST00000401950	ENST00000569789		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000401950	ENST00000343070		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000401950	ENST00000307331		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000401950	ENST00000568923		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000401950	ENST00000568085		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-3UTR	ENST00000333027	ENST00000569789		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000333027	ENST00000343070		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000333027	ENST00000307331		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000333027	ENST00000568923		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000333027	ENST00000568085		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
intron-3UTR	ENST00000323630	ENST00000569789		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
intron-5UTR	ENST00000323630	ENST00000343070		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
intron-5UTR	ENST00000323630	ENST00000307331		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
intron-5UTR	ENST00000323630	ENST00000568923		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
intron-5UTR	ENST00000323630	ENST00000568085		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-3UTR	ENST00000351488	ENST00000569789		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000351488	ENST00000343070		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000351488	ENST00000307331		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000351488	ENST00000568923		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000351488	ENST00000568085		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-3UTR	ENST00000406629	ENST00000569789		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000406629	ENST00000343070		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000406629	ENST00000307331		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000406629	ENST00000568923		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5CDS-5UTR	ENST00000406629	ENST00000568085		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
3UTR-3UTR	ENST00000415511	ENST00000569789		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
3UTR-5UTR	ENST00000415511	ENST00000343070		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
3UTR-5UTR	ENST00000415511	ENST00000307331		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
3UTR-5UTR	ENST00000415511	ENST00000568923		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
3UTR-5UTR	ENST00000415511	ENST00000568085		TCGA	RV	LUAD	TCGA-62-A46U-01A	MTMR3	chr22	30367051	+	SCNN1B	chr16	23359913	+
5UTR-3CDS	ENST00000369981	ENST00000370010		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369981	ENST00000370014		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369981	ENST00000447266		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369981	ENST00000541192		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369981	ENST00000327284		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-intron	ENST00000369981	ENST00000436928		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369985	ENST00000370010		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369985	ENST00000370014		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369985	ENST00000447266		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369985	ENST00000541192		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369985	ENST00000327284		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-intron	ENST00000369985	ENST00000436928		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369977	ENST00000370010		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369977	ENST00000370014		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369977	ENST00000447266		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369977	ENST00000541192		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-3CDS	ENST00000369977	ENST00000327284		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5UTR-intron	ENST00000369977	ENST00000436928		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000369975	ENST00000370010		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000369975	ENST00000370014		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000369975	ENST00000447266		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000369975	ENST00000541192		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000369975	ENST00000327284		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-intron	ENST00000369975	ENST00000436928		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000462633	ENST00000541192		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-3CDS	ENST00000462633	ENST00000327284		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	LUAD	TCGA-05-4244-01A	MYO6	chr6	76459140	+	SENP6	chr6	76385151	+
5CDS-intron	ENST00000446845	ENST00000443503		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000446845	ENST00000273179		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000446845	ENST00000310189		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000311806	ENST00000443503		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000311806	ENST00000273179		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
5CDS-intron	ENST00000311806	ENST00000310189		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
intron-intron	ENST00000492714	ENST00000443503		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
intron-intron	ENST00000492714	ENST00000273179		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
intron-intron	ENST00000492714	ENST00000310189		TCGA	RV	LUAD	TCGA-91-7771-01A	OXSR1	chr3	38263178	+	CTDSPL	chr3	37998602	+
In-frame	ENST00000541323	ENST00000324849		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000541323	ENST00000324815		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000541323	ENST00000521829		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000541323	ENST00000521005		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000541323	ENST00000521162		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
In-frame	ENST00000251630	ENST00000324849		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000251630	ENST00000324815		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000251630	ENST00000521829		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000251630	ENST00000521005		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000251630	ENST00000521162		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
In-frame	ENST00000398074	ENST00000324849		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000398074	ENST00000324815		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000398074	ENST00000521829		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000398074	ENST00000521005		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
5CDS-intron	ENST00000398074	ENST00000521162		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
intron-3CDS	ENST00000523248	ENST00000324849		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
intron-intron	ENST00000523248	ENST00000324815		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
intron-intron	ENST00000523248	ENST00000521829		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
intron-intron	ENST00000523248	ENST00000521005		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
intron-intron	ENST00000523248	ENST00000521162		TCGA	RV	LUAD	TCGA-91-A4BC-01A	PDGFRL	chr8	17447274	+	VPS37A	chr8	17132242	+
Frame-shit	ENST00000566044	ENST00000359062		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
5CDS-3UTR	ENST00000566044	ENST00000544307		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
Frame-shit	ENST00000455779	ENST00000359062		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
5CDS-3UTR	ENST00000455779	ENST00000544307		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
Frame-shit	ENST00000299167	ENST00000359062		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
5CDS-3UTR	ENST00000299167	ENST00000544307		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
Frame-shit	ENST00000323584	ENST00000359062		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
5CDS-3UTR	ENST00000323584	ENST00000544307		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
intron-3CDS	ENST00000567402	ENST00000359062		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
intron-3UTR	ENST00000567402	ENST00000544307		TCGA	RV	LUAD	TCGA-MN-A4N5-01A	PHKB	chr16	47703328	+	PDE3A	chr12	20799424	+
5CDS-intron	ENST00000418331	ENST00000490414		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
5CDS-intron	ENST00000418331	ENST00000367992		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
5CDS-intron	ENST00000418331	ENST00000289902		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
5CDS-intron	ENST00000440289	ENST00000490414		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
5CDS-intron	ENST00000440289	ENST00000367992		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
5CDS-intron	ENST00000440289	ENST00000289902		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
3UTR-intron	ENST00000526550	ENST00000490414		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
3UTR-intron	ENST00000526550	ENST00000367992		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
3UTR-intron	ENST00000526550	ENST00000289902		TCGA	RV	LUAD	TCGA-38-6178-01A	PTPRJ	chr11	48134535	+	FCER1G	chr1	161187776	+
5UTR-3CDS	ENST00000375114	ENST00000376309		TCGA	RV	LUAD	TCGA-78-8660-01A	RALY	chr20	32581937	+	DEFB123	chr20	30037832	+
5UTR-3CDS	ENST00000246194	ENST00000376309		TCGA	RV	LUAD	TCGA-78-8660-01A	RALY	chr20	32581937	+	DEFB123	chr20	30037832	+
intron-3CDS	ENST00000493399	ENST00000376309		TCGA	RV	LUAD	TCGA-78-8660-01A	RALY	chr20	32581937	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000337907	ENST00000377411		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000337907	ENST00000414642		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000377464	ENST00000377411		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000377464	ENST00000414642		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000400907	ENST00000377411		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000400907	ENST00000414642		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000400908	ENST00000377411		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
Frame-shit	ENST00000400908	ENST00000414642		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
5UTR-3CDS	ENST00000476556	ENST00000377411		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
5UTR-3CDS	ENST00000476556	ENST00000414642		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
5UTR-3CDS	ENST00000460659	ENST00000377411		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
5UTR-3CDS	ENST00000460659	ENST00000414642		TCGA	RV	LUAD	TCGA-55-7574-01A	RERE	chr1	8482787	-	GPR157	chr1	9171548	-
In-frame	ENST00000333942	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000333942	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000333942	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000333942	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000333942	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5CDS-intron	ENST00000333942	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000358365	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000358365	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000358365	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000358365	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000358365	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5CDS-intron	ENST00000358365	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000583994	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000583994	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000583994	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000583994	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000583994	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-intron	ENST00000583994	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000545287	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000545287	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000545287	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000545287	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000545287	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5CDS-intron	ENST00000545287	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000354266	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000354266	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000354266	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000354266	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-3CDS	ENST00000354266	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5UTR-intron	ENST00000354266	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000394692	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000394692	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000394692	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000394692	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000394692	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5CDS-intron	ENST00000394692	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000581094	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000581094	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000581094	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000581094	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
In-frame	ENST00000581094	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
5CDS-intron	ENST00000581094	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
3UTR-3CDS	ENST00000580976	ENST00000543378		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
3UTR-3CDS	ENST00000580976	ENST00000327564		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
3UTR-3CDS	ENST00000580976	ENST00000394713		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
3UTR-3CDS	ENST00000580976	ENST00000584368		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
3UTR-3CDS	ENST00000580976	ENST00000341671		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
3UTR-intron	ENST00000580976	ENST00000581786		TCGA	RV	LUAD	TCGA-93-8067-01A	RHOT1	chr17	30469748	+	LRRC37B	chr17	30374780	+
intron-3CDS	ENST00000449833	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-intron	ENST00000449833	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-3CDS	ENST00000409161	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-intron	ENST00000409161	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
Frame-shit	ENST00000423696	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
5CDS-intron	ENST00000423696	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
Frame-shit	ENST00000338508	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
5CDS-intron	ENST00000338508	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-3CDS	ENST00000409530	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-intron	ENST00000409530	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-3CDS	ENST00000449116	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-intron	ENST00000449116	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-3CDS	ENST00000357171	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
intron-intron	ENST00000357171	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
5UTR-3CDS	ENST00000468619	ENST00000322563		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
5UTR-intron	ENST00000468619	ENST00000532150		TCGA	RV	LUAD	TCGA-78-7161-01A	SHANK2	chr11	70644548	-	WNT11	chr11	75902900	-
Frame-shit	ENST00000361368	ENST00000249270		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
Frame-shit	ENST00000361368	ENST00000379263		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
Frame-shit	ENST00000361368	ENST00000412522		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
Frame-shit	ENST00000361125	ENST00000249270		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
Frame-shit	ENST00000361125	ENST00000379263		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
Frame-shit	ENST00000361125	ENST00000412522		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
intron-3CDS	ENST00000480055	ENST00000249270		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
intron-3CDS	ENST00000480055	ENST00000379263		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
intron-3CDS	ENST00000480055	ENST00000412522		TCGA	RV	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982312	-
In-frame	ENST00000260197	ENST00000389960		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000316356		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000528231		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000527523		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000524452		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000359152		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000354566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000525702		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000525423		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000260197	ENST00000529581		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000389958		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000260197	ENST00000533892		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000260197	ENST00000528566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-3CDS	ENST00000532451	ENST00000389960		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000316356		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000528231		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000527523		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000524452		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000359152		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000354566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000525702		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000525423		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-5UTR	ENST00000532451	ENST00000529581		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000389958		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-5UTR	ENST00000532451	ENST00000533892		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
intron-intron	ENST00000532451	ENST00000528566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
In-frame	ENST00000525532	ENST00000389960		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000316356		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000528231		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000527523		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000524452		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000359152		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000354566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000525702		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000525423		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000525532	ENST00000529581		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000389958		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000525532	ENST00000533892		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000525532	ENST00000528566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
In-frame	ENST00000532694	ENST00000389960		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000316356		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000528231		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000527523		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000524452		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000359152		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000354566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000525702		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000525423		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000532694	ENST00000529581		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000389958		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000532694	ENST00000533892		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000532694	ENST00000528566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
In-frame	ENST00000534286	ENST00000389960		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000316356		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000528231		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000527523		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000524452		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000359152		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000354566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000525702		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000525423		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000534286	ENST00000529581		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000389958		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000534286	ENST00000533892		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000534286	ENST00000528566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
In-frame	ENST00000527934	ENST00000389960		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000316356		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000528231		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000527523		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000524452		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000359152		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000354566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000525702		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000525423		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000527934	ENST00000529581		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000389958		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-5UTR	ENST00000527934	ENST00000533892		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
5CDS-intron	ENST00000527934	ENST00000528566		TCGA	RV	LUAD	TCGA-38-4632-01A	SORL1	chr11	121466481	+	SYTL2	chr11	85428573	-
Frame-shit	ENST00000599117	ENST00000319023		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000599117	ENST00000539574		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000599117	ENST00000530055		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000599117	ENST00000526039		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000432763	ENST00000319023		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000432763	ENST00000539574		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000432763	ENST00000530055		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000432763	ENST00000526039		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000402194	ENST00000319023		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000402194	ENST00000539574		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000402194	ENST00000530055		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000402194	ENST00000526039		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000359191	ENST00000319023		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000359191	ENST00000539574		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000359191	ENST00000530055		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000359191	ENST00000526039		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
Frame-shit	ENST00000598725	ENST00000319023		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000598725	ENST00000539574		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000598725	ENST00000530055		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
5CDS-intron	ENST00000598725	ENST00000526039		TCGA	RV	LUAD	TCGA-69-7764-01A	SUPT5H	chr19	39950600	+	NADSYN1	chr11	71174478	+
intron-3CDS	ENST00000519519	ENST00000443356		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000519519	ENST00000603859		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000519519	ENST00000254627		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000519519	ENST00000262283		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000418210	ENST00000443356		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000418210	ENST00000603859		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000418210	ENST00000254627		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000418210	ENST00000262283		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000458549	ENST00000443356		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000458549	ENST00000603859		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000458549	ENST00000254627		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
Frame-shit	ENST00000458549	ENST00000262283		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523902	ENST00000443356		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523902	ENST00000603859		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523902	ENST00000254627		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
intron-3CDS	ENST00000523902	ENST00000262283		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	OC90	chr8	133058130	-
5CDS-intron	ENST00000524325	ENST00000341807		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000524325	ENST00000303045		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000524325	ENST00000435777		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000307180	ENST00000341807		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000307180	ENST00000303045		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000307180	ENST00000435777		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000520166	ENST00000341807		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000520166	ENST00000303045		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000520166	ENST00000435777		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000519651	ENST00000341807		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000519651	ENST00000303045		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
5CDS-intron	ENST00000519651	ENST00000435777		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
intron-intron	ENST00000518928	ENST00000341807		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
intron-intron	ENST00000518928	ENST00000303045		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
intron-intron	ENST00000518928	ENST00000435777		TCGA	RV	LUAD	TCGA-J2-A4AE-01A	TSNARE1	chr8	143365774	-	COL22A1	chr8	139833654	-
In-frame	ENST00000353024	ENST00000271636		TCGA	RV	LUAD	TCGA-44-6775-01A	TUFT1	chr1	151537090	+	CGN	chr1	151492642	+
intron-3CDS	ENST00000392712	ENST00000271636		TCGA	RV	LUAD	TCGA-44-6775-01A	TUFT1	chr1	151537090	+	CGN	chr1	151492642	+
In-frame	ENST00000368849	ENST00000271636		TCGA	RV	LUAD	TCGA-44-6775-01A	TUFT1	chr1	151537090	+	CGN	chr1	151492642	+
In-frame	ENST00000368848	ENST00000271636		TCGA	RV	LUAD	TCGA-44-6775-01A	TUFT1	chr1	151537090	+	CGN	chr1	151492642	+
In-frame	ENST00000538902	ENST00000271636		TCGA	RV	LUAD	TCGA-44-6775-01A	TUFT1	chr1	151537090	+	CGN	chr1	151492642	+
5CDS-5UTR	ENST00000293218	ENST00000314256		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000293218	ENST00000579208		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000293218	ENST00000375248		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000293218	ENST00000583795		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000589666	ENST00000314256		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000589666	ENST00000579208		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000589666	ENST00000375248		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000589666	ENST00000583795		TCGA	RV	LUAD	TCGA-55-A48Y-01A	UNK	chr17	73781065	+	KIAA0195	chr17	73467881	+
In-frame	ENST00000335891	ENST00000296484		TCGA	RV	LUAD	TCGA-55-8301-01A	VPRBP	chr3	51497130	-	POC1A	chr3	52185116	-
In-frame	ENST00000335891	ENST00000394970		TCGA	RV	LUAD	TCGA-55-8301-01A	VPRBP	chr3	51497130	-	POC1A	chr3	52185116	-
5CDS-5UTR	ENST00000335891	ENST00000474012		TCGA	RV	LUAD	TCGA-55-8301-01A	VPRBP	chr3	51497130	-	POC1A	chr3	52185116	-
In-frame	ENST00000354473	ENST00000487694		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
In-frame	ENST00000354473	ENST00000461745		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
In-frame	ENST00000354473	ENST00000332191		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
5CDS-intron	ENST00000354473	ENST00000469233		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
5UTR-3CDS	ENST00000496809	ENST00000487694		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
5UTR-3CDS	ENST00000496809	ENST00000461745		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
5UTR-3CDS	ENST00000496809	ENST00000332191		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
5UTR-intron	ENST00000496809	ENST00000469233		TCGA	RV	LUAD	TCGA-91-A4BC-01A	VPS72	chr1	151156793	-	ROBO2	chr3	77617464	+
intron-3UTR	ENST00000370440	ENST00000370931		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000370440	ENST00000370932		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000370440	ENST00000351052		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000370440	ENST00000460330		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000354608		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000356595		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000414819		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000306666		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000370924		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000370931		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000370932		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000351052		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000460330		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000354608		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000356595		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000414819		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000306666		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000370924		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000337393	ENST00000370931		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000337393	ENST00000370932		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000337393	ENST00000351052		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000337393	ENST00000460330		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000337393	ENST00000354608		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000337393	ENST00000356595		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000337393	ENST00000414819		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000337393	ENST00000306666		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000337393	ENST00000370924		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000361321	ENST00000370931		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000361321	ENST00000370932		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000361321	ENST00000351052		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000361321	ENST00000460330		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000361321	ENST00000354608		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000361321	ENST00000356595		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000361321	ENST00000414819		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000361321	ENST00000306666		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000361321	ENST00000370924		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000467231	ENST00000370931		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000467231	ENST00000370932		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000467231	ENST00000351052		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-3UTR	ENST00000467231	ENST00000460330		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000467231	ENST00000354608		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000467231	ENST00000356595		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000467231	ENST00000414819		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000467231	ENST00000306666		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
5UTR-intron	ENST00000467231	ENST00000370924		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487547	-	PTGER3	chr1	71318542	-
In-frame	ENST00000265748	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6778-01A	ANLN	chr7	36436028	+	EEPD1	chr7	36336602	+
In-frame	ENST00000265748	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6778-01A	ANLN	chr7	36436028	+	EEPD1	chr7	36336602	+
In-frame	ENST00000396068	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6778-01A	ANLN	chr7	36436028	+	EEPD1	chr7	36336602	+
In-frame	ENST00000396068	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6778-01A	ANLN	chr7	36436028	+	EEPD1	chr7	36336602	+
intron-3CDS	ENST00000495714	ENST00000242108		TCGA	RV	LUAD	TCGA-44-6778-01A	ANLN	chr7	36436028	+	EEPD1	chr7	36336602	+
intron-3CDS	ENST00000495714	ENST00000534978		TCGA	RV	LUAD	TCGA-44-6778-01A	ANLN	chr7	36436028	+	EEPD1	chr7	36336602	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2668-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6775-01C	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000256343	ENST00000267622		TCGA	RV	LUAD	TCGA-55-6987-01A	CATSPERB	chr14	92246920	-	TRIP11	chr14	92442533	-
intron-intron	ENST00000256343	ENST00000555105		TCGA	RV	LUAD	TCGA-55-6987-01A	CATSPERB	chr14	92246920	-	TRIP11	chr14	92442533	-
In-frame	ENST00000361168	ENST00000368346		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
In-frame	ENST00000361168	ENST00000392403		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5CDS-intron	ENST00000361168	ENST00000548830		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
In-frame	ENST00000368361	ENST00000368346		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
In-frame	ENST00000368361	ENST00000392403		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5CDS-intron	ENST00000368361	ENST00000548830		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
In-frame	ENST00000355560	ENST00000368346		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
In-frame	ENST00000355560	ENST00000392403		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5CDS-intron	ENST00000355560	ENST00000548830		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5UTR-3CDS	ENST00000497188	ENST00000368346		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5UTR-3CDS	ENST00000497188	ENST00000392403		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5UTR-intron	ENST00000497188	ENST00000548830		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
Frame-shit	ENST00000536801	ENST00000368346		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
Frame-shit	ENST00000536801	ENST00000392403		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
5CDS-intron	ENST00000536801	ENST00000548830		TCGA	RV	LUAD	TCGA-91-6836-01A	CLK2	chr1	155236520	-	ASH1L	chr1	155313533	-
Frame-shit	ENST00000466830	ENST00000307363		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000466830	ENST00000399402		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000466830	ENST00000445488		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000466830	ENST00000307377		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
5CDS-intron	ENST00000466830	ENST00000497796		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-3CDS	ENST00000423894	ENST00000307363		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-5UTR	ENST00000423894	ENST00000399402		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-5UTR	ENST00000423894	ENST00000445488		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-5UTR	ENST00000423894	ENST00000307377		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-intron	ENST00000423894	ENST00000497796		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-3CDS	ENST00000469102	ENST00000307363		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-5UTR	ENST00000469102	ENST00000399402		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-5UTR	ENST00000469102	ENST00000445488		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-5UTR	ENST00000469102	ENST00000307377		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
intron-intron	ENST00000469102	ENST00000497796		TCGA	RV	LUAD	TCGA-67-3774-01A	CMC1	chr3	28304871	+	GLB1	chr3	33114205	-
5CDS-5UTR	ENST00000225428	ENST00000504681		TCGA	RV	LUAD	TCGA-50-5066-02A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000225428	ENST00000393354		TCGA	RV	LUAD	TCGA-50-5066-02A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000225428	ENST00000300404		TCGA	RV	LUAD	TCGA-50-5066-02A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5UTR-5UTR	ENST00000536127	ENST00000504681		TCGA	RV	LUAD	TCGA-50-5066-02A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5UTR-5UTR	ENST00000536127	ENST00000393354		TCGA	RV	LUAD	TCGA-50-5066-02A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
5UTR-5UTR	ENST00000536127	ENST00000300404		TCGA	RV	LUAD	TCGA-50-5066-02A	CWC25	chr17	36977154	-	B4GALNT2	chr17	47218609	+
Frame-shit	ENST00000340748	ENST00000293677		TCGA	RV	LUAD	TCGA-69-7979-01A	DNMT1	chr19	10254442	-	RAVER1	chr19	10441202	-
Frame-shit	ENST00000540357	ENST00000293677		TCGA	RV	LUAD	TCGA-69-7979-01A	DNMT1	chr19	10254442	-	RAVER1	chr19	10441202	-
Frame-shit	ENST00000359526	ENST00000293677		TCGA	RV	LUAD	TCGA-69-7979-01A	DNMT1	chr19	10254442	-	RAVER1	chr19	10441202	-
5UTR-3CDS	ENST00000589538	ENST00000293677		TCGA	RV	LUAD	TCGA-69-7979-01A	DNMT1	chr19	10254442	-	RAVER1	chr19	10441202	-
In-frame	ENST00000298049	ENST00000245663		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
In-frame	ENST00000298049	ENST00000395104		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000298049	ENST00000302995		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
5CDS-intron	ENST00000298049	ENST00000480766		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000217182	ENST00000245663		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000217182	ENST00000395104		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000217182	ENST00000302995		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
5CDS-intron	ENST00000217182	ENST00000480766		TCGA	RV	LUAD	TCGA-44-2656-01A	EEF1A2	chr20	62124490	-	ZBTB46	chr20	62407315	-
Frame-shit	ENST00000265755	ENST00000449052		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000443370		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000349350		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000348028		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000421100		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000427578		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000546292		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
In-frame	ENST00000265755	ENST00000546213		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000538115		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000265755	ENST00000542585		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000449052		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000443370		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000349350		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000348028		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000421100		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000427578		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000546292		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
In-frame	ENST00000455841	ENST00000546213		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000538115		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000455841	ENST00000542585		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000449052		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000443370		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000349350		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000348028		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000421100		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000427578		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000546292		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
In-frame	ENST00000424337	ENST00000546213		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000538115		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000424337	ENST00000542585		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000449052		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000443370		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000349350		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000348028		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000421100		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000427578		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000546292		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
In-frame	ENST00000476977	ENST00000546213		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000538115		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000476977	ENST00000542585		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000449052		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000443370		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000349350		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000348028		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000421100		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000427578		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000546292		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000546213		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000538115		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
3UTR-3CDS	ENST00000489094	ENST00000542585		TCGA	RV	LUAD	TCGA-49-AAR0-01A	GTF2IRD1	chr7	73953090	+	ZAN	chr7	100389588	+
Frame-shit	ENST00000379719	ENST00000528080		TCGA	RV	LUAD	TCGA-69-7974-01A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
Frame-shit	ENST00000379719	ENST00000527813		TCGA	RV	LUAD	TCGA-69-7974-01A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
Frame-shit	ENST00000379719	ENST00000533723		TCGA	RV	LUAD	TCGA-69-7974-01A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-3CDS	ENST00000533680	ENST00000528080		TCGA	RV	LUAD	TCGA-69-7974-01A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-3CDS	ENST00000533680	ENST00000527813		TCGA	RV	LUAD	TCGA-69-7974-01A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-3CDS	ENST00000533680	ENST00000533723		TCGA	RV	LUAD	TCGA-69-7974-01A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-intron	ENST00000509603	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000509603	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000509603	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000509603	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000509603	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000509603	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000509603	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-intron	ENST00000319524	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000319524	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000319524	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000319524	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000319524	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000319524	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000319524	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-intron	ENST00000268763	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000268763	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000268763	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000268763	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000268763	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000268763	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000268763	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-intron	ENST00000398988	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000398988	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000398988	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000398988	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000398988	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000398988	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000398988	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-intron	ENST00000581975	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000581975	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000581975	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000581975	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000581975	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000581975	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000581975	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-intron	ENST00000582410	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000582410	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000582410	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000582410	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000582410	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000582410	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000582410	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-intron	ENST00000578981	ENST00000534836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000578981	ENST00000541045		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000578981	ENST00000536908		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000578981	ENST00000378738		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000578981	ENST00000394832		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000578981	ENST00000320856		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
intron-5UTR	ENST00000578981	ENST00000394835		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KSR1	chr17	25887482	+	EFCAB5	chr17	28295809	+
5UTR-5UTR	ENST00000317552	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000317552	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-intron	ENST00000317552	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000317552	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000317552	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000317552	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-intron	ENST00000453318	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-intron	ENST00000380779	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-intron	ENST00000380780	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-intron	ENST00000380785	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380787	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380787	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-intron	ENST00000380787	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380787	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380787	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380787	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380782	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380782	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-intron	ENST00000380782	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380782	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380782	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380782	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368708		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000487430		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-intron	ENST00000479925	ENST00000497140		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368710		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368709		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368707		TCGA	RV	LUAD	TCGA-L9-A444-01A	MID1	chrX	10588330	-	S100A2	chr1	153536363	-
5UTR-intron	ENST00000355630	ENST00000479929		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000404685		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000405511		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000429038		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000332987		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000352371		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000397275		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000355630	ENST00000328429		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-intron	ENST00000396617	ENST00000479929		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000404685		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000405511		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000429038		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000332987		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000352371		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000397275		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000396617	ENST00000328429		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-intron	ENST00000402042	ENST00000479929		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000404685		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000405511		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000429038		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000332987		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000352371		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000397275		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000402042	ENST00000328429		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-intron	ENST00000466278	ENST00000479929		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000404685		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000405511		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000429038		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000332987		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000352371		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000397275		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
5UTR-5UTR	ENST00000466278	ENST00000328429		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-intron	ENST00000407029	ENST00000479929		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000404685		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000405511		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000429038		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000332987		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000352371		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000397275		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000407029	ENST00000328429		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-intron	ENST00000402630	ENST00000479929		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000404685		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000405511		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000429038		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000332987		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000352371		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000397275		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-5UTR	ENST00000402630	ENST00000328429		TCGA	RV	LUAD	TCGA-55-6978-01A	MKL1	chr22	41032482	-	APOL4	chr22	36598101	-
intron-3CDS	ENST00000379666	ENST00000302188		TCGA	RV	LUAD	TCGA-78-7149-01A	MRPL33	chr2	27997397	+	RBKS	chr2	28004655	-
intron-intron	ENST00000379666	ENST00000444339		TCGA	RV	LUAD	TCGA-78-7149-01A	MRPL33	chr2	27997397	+	RBKS	chr2	28004655	-
In-frame	ENST00000296102	ENST00000302188		TCGA	RV	LUAD	TCGA-78-7149-01A	MRPL33	chr2	27997397	+	RBKS	chr2	28004655	-
5CDS-intron	ENST00000296102	ENST00000444339		TCGA	RV	LUAD	TCGA-78-7149-01A	MRPL33	chr2	27997397	+	RBKS	chr2	28004655	-
intron-3CDS	ENST00000483992	ENST00000302188		TCGA	RV	LUAD	TCGA-78-7149-01A	MRPL33	chr2	27997397	+	RBKS	chr2	28004655	-
intron-intron	ENST00000483992	ENST00000444339		TCGA	RV	LUAD	TCGA-78-7149-01A	MRPL33	chr2	27997397	+	RBKS	chr2	28004655	-
In-frame	ENST00000495075	ENST00000316549		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
5CDS-intron	ENST00000495075	ENST00000498717		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
In-frame	ENST00000310776	ENST00000316549		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
5CDS-intron	ENST00000310776	ENST00000498717		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
In-frame	ENST00000465056	ENST00000316549		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
5CDS-intron	ENST00000465056	ENST00000498717		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
In-frame	ENST00000478464	ENST00000316549		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
5CDS-intron	ENST00000478464	ENST00000498717		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
intron-3CDS	ENST00000489521	ENST00000316549		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
intron-intron	ENST00000489521	ENST00000498717		TCGA	RV	LUAD	TCGA-67-3774-01A	MRPS22	chr3	139071634	+	SLC9A9	chr3	143412149	-
5UTR-3CDS	ENST00000216181	ENST00000300105		TCGA	RV	LUAD	TCGA-44-A4SS-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36983595	-
5UTR-intron	ENST00000216181	ENST00000480002		TCGA	RV	LUAD	TCGA-44-A4SS-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000475726	ENST00000300105		TCGA	RV	LUAD	TCGA-44-A4SS-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000475726	ENST00000480002		TCGA	RV	LUAD	TCGA-44-A4SS-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000401701	ENST00000300105		TCGA	RV	LUAD	TCGA-44-A4SS-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000401701	ENST00000480002		TCGA	RV	LUAD	TCGA-44-A4SS-01A	MYH9	chr22	36783852	-	CACNG2	chr22	36983595	-
Frame-shit	ENST00000216181	ENST00000216185		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
5CDS-intron	ENST00000216181	ENST00000416967		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
5CDS-intron	ENST00000216181	ENST00000487725		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
5CDS-intron	ENST00000216181	ENST00000403313		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-3CDS	ENST00000475726	ENST00000216185		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-intron	ENST00000475726	ENST00000416967		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-intron	ENST00000475726	ENST00000487725		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-intron	ENST00000475726	ENST00000403313		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-3CDS	ENST00000401701	ENST00000216185		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-intron	ENST00000401701	ENST00000416967		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-intron	ENST00000401701	ENST00000487725		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
intron-intron	ENST00000401701	ENST00000403313		TCGA	RV	LUAD	TCGA-55-8299-01A	MYH9	chr22	36718474	-	TXN2	chr22	36876884	-
5CDS-5UTR	ENST00000318217	ENST00000332509		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000318217	ENST00000335539		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000318217	ENST00000402064		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-intron	ENST00000318217	ENST00000490473		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000318217	ENST00000436218		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000318217	ENST00000447598		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000318217	ENST00000435484		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000318217	ENST00000417303		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000332509		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000335539		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000402064		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-intron	ENST00000394649	ENST00000490473		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000436218		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000447598		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000435484		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000394649	ENST00000417303		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000332509		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000335539		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000402064		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-intron	ENST00000579584	ENST00000490473		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000436218		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000447598		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000435484		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000579584	ENST00000417303		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000332509		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000335539		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000402064		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-intron	ENST00000584232	ENST00000490473		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000436218		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000447598		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000435484		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
intron-5UTR	ENST00000584232	ENST00000417303		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000332509		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000335539		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000402064		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-intron	ENST00000583621	ENST00000490473		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000436218		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000447598		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000435484		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
5CDS-5UTR	ENST00000583621	ENST00000417303		TCGA	RV	LUAD	TCGA-38-4630-01A	MYO1D	chr17	31203796	-	PLA2G6	chr22	38565478	-
In-frame	ENST00000360655	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000360655	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000360655	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000360655	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000360655	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000360655	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396085	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396085	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396085	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396085	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396085	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000396085	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000349880	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000349880	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000349880	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000349880	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000349880	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000349880	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396087	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396087	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396087	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396087	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000396087	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000396087	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000527559	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000527559	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000527559	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000527559	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000527559	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000527559	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000540292	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000540292	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000540292	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000540292	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
In-frame	ENST00000540292	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-3UTR	ENST00000540292	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000533917	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000533917	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000533917	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000533917	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000533917	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3UTR	ENST00000533917	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000311043	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000311043	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000311043	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000311043	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3CDS	ENST00000311043	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
intron-3UTR	ENST00000311043	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
3UTR-3CDS	ENST00000534229	ENST00000527185		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
3UTR-3CDS	ENST00000534229	ENST00000528682		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
3UTR-3CDS	ENST00000534229	ENST00000524871		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
3UTR-3CDS	ENST00000534229	ENST00000418526		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
3UTR-3CDS	ENST00000534229	ENST00000279463		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
3UTR-3UTR	ENST00000534229	ENST00000524560		TCGA	RV	LUAD	TCGA-55-7576-01A	NAV2	chr11	19890543	+	CNTN5	chr11	100126492	+
5CDS-5UTR	ENST00000257821	ENST00000298838		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000257821	ENST00000539589		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000323180	ENST00000298838		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000323180	ENST00000539589		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000418153	ENST00000298838		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000418153	ENST00000539589		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
intron-5UTR	ENST00000527753	ENST00000298838		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
intron-5UTR	ENST00000527753	ENST00000539589		TCGA	RV	LUAD	TCGA-69-7979-01A	PHF21A	chr11	46098305	-	PACSIN3	chr11	47204620	-
intron-3CDS	ENST00000368445	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000368445	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-intron	ENST00000368445	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000368449	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000368449	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-intron	ENST00000368449	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000448116	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000448116	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-intron	ENST00000448116	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
5UTR-3CDS	ENST00000368450	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
5UTR-3CDS	ENST00000368450	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
5UTR-intron	ENST00000368450	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
5UTR-3CDS	ENST00000368453	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
5UTR-3CDS	ENST00000368453	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
5UTR-intron	ENST00000368453	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000606391	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000606391	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-intron	ENST00000606391	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000490667	ENST00000368346		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-3CDS	ENST00000490667	ENST00000392403		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
intron-intron	ENST00000490667	ENST00000548830		TCGA	RV	LUAD	TCGA-55-7903-01A	SHC1	chr1	154946724	-	ASH1L	chr1	155309159	-
Frame-shit	ENST00000262160	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
Frame-shit	ENST00000262160	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
Frame-shit	ENST00000262160	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000262160	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000262160	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000262160	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000262160	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000402690	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000402690	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000402690	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000402690	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000402690	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000402690	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000402690	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000356825	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000356825	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000356825	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000356825	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000356825	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000356825	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000356825	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000586040	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000586040	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000586040	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000586040	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000586040	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000586040	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000586040	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000591214	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000591214	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
In-frame	ENST00000591214	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000591214	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-intron	ENST00000591214	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000591214	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5CDS-5UTR	ENST00000591214	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-3CDS	ENST00000587353	ENST00000454341		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-3CDS	ENST00000587353	ENST00000284694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-3CDS	ENST00000587353	ENST00000544758		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-5UTR	ENST00000587353	ENST00000356858		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-intron	ENST00000587353	ENST00000480379		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-5UTR	ENST00000587353	ENST00000368674		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
intron-5UTR	ENST00000587353	ENST00000392694		TCGA	RV	LUAD	TCGA-97-7937-01A	SMAD2	chr18	45394694	-	C10orf90	chr10	128202508	-
5UTR-3CDS	ENST00000357395	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000357395	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000357395	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000357395	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000357395	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-5UTR	ENST00000357395	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000358025	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000358025	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000358025	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000358025	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000358025	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-5UTR	ENST00000358025	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000344113	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000344113	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000344113	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000344113	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000344113	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-5UTR	ENST00000344113	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000341472	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000341472	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000341472	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000341472	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000341472	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-5UTR	ENST00000341472	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000356081	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000356081	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000356081	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000356081	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-3CDS	ENST00000356081	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
5UTR-5UTR	ENST00000356081	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554584	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554584	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554584	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554584	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554584	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000554584	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555002	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555002	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555002	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555002	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555002	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000555002	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000394768	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000394768	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000394768	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000394768	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000394768	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000394768	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000556725	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000556725	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000556725	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000556725	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000556725	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000556725	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000553455	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000553455	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000553455	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000553455	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000553455	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000553455	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555022	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555022	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555022	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555022	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000555022	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000555022	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554805	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554805	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554805	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554805	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000554805	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000554805	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000458046	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000458046	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000458046	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000458046	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000458046	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000458046	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000441438	ENST00000193403		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000441438	ENST00000394419		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000441438	ENST00000438964		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000441438	ENST00000376839		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-3CDS	ENST00000441438	ENST00000538545		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
intron-5UTR	ENST00000441438	ENST00000554508		TCGA	RV	LUAD	TCGA-86-8358-01A	SYNE2	chr14	64319861	+	ACTN1	chr14	69378959	-
In-frame	ENST00000300896	ENST00000083182		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000300896	ENST00000592995		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
intron-3CDS	ENST00000592339	ENST00000083182		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
intron-intron	ENST00000592339	ENST00000592995		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
In-frame	ENST00000393003	ENST00000083182		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
5CDS-intron	ENST00000393003	ENST00000592995		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
intron-3CDS	ENST00000586881	ENST00000083182		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
intron-intron	ENST00000586881	ENST00000592995		TCGA	RV	LUAD	TCGA-75-5126-01A	USP32	chr17	58372044	-	APPBP2	chr17	58577848	-
5CDS-5UTR	ENST00000487273	ENST00000319104		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000487273	ENST00000319073		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000487273	ENST00000534961		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000487273	ENST00000527424		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000487273	ENST00000526349		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000466936	ENST00000319104		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000466936	ENST00000319073		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000466936	ENST00000534961		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000466936	ENST00000527424		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000466936	ENST00000526349		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000481513	ENST00000319104		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000481513	ENST00000319073		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000481513	ENST00000534961		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000481513	ENST00000527424		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
5CDS-5UTR	ENST00000481513	ENST00000526349		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
intron-5UTR	ENST00000484143	ENST00000319104		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
intron-5UTR	ENST00000484143	ENST00000319073		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
intron-5UTR	ENST00000484143	ENST00000534961		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
intron-5UTR	ENST00000484143	ENST00000527424		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
intron-5UTR	ENST00000484143	ENST00000526349		TCGA	RV	LUAD	TCGA-50-5933-01A	ADAM9	chr8	38854679	+	RNF170	chr8	42743014	-
Frame-shit	ENST00000284268	ENST00000427908		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000284268	ENST00000423571		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000284268	ENST00000439742		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000284268	ENST00000513063		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000535119	ENST00000427908		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000535119	ENST00000423571		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000535119	ENST00000439742		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
Frame-shit	ENST00000535119	ENST00000513063		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
5UTR-3CDS	ENST00000503939	ENST00000427908		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
5UTR-3CDS	ENST00000503939	ENST00000423571		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
5UTR-3CDS	ENST00000503939	ENST00000439742		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
5UTR-3CDS	ENST00000503939	ENST00000513063		TCGA	RV	LUAD	TCGA-05-4426-01A	ANKH	chr5	14741936	-	MXD3	chr5	176737541	-
5UTR-5UTR	ENST00000378330	ENST00000401449		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000548489		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-intron	ENST00000378330	ENST00000551557		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-intron	ENST00000378330	ENST00000343820		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-intron	ENST00000378330	ENST00000407501		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000405385		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000551402		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000577543		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000551541		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000345133		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000330513		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000400167		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000378330	ENST00000472042		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000401449		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000548489		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-intron	ENST00000301030	ENST00000551557		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-intron	ENST00000301030	ENST00000343820		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-intron	ENST00000301030	ENST00000407501		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000405385		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000551402		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000577543		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000551541		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000345133		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000330513		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000400167		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
5UTR-5UTR	ENST00000301030	ENST00000472042		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000401449		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000548489		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-intron	ENST00000563291	ENST00000551557		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-intron	ENST00000563291	ENST00000343820		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-intron	ENST00000563291	ENST00000407501		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000405385		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000551402		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000577543		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000551541		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000345133		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000330513		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000400167		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000563291	ENST00000472042		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000401449		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000548489		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-intron	ENST00000567736	ENST00000551557		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-intron	ENST00000567736	ENST00000343820		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-intron	ENST00000567736	ENST00000407501		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000405385		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000551402		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000577543		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000551541		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000345133		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000330513		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000400167		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
intron-5UTR	ENST00000567736	ENST00000472042		TCGA	RV	LUAD	TCGA-44-7667-01A	ANKRD11	chr16	89556653	-	TGIF1	chr18	3456352	+
Frame-shit	ENST00000350026	ENST00000366898		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000350026	ENST00000366897		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000350026	ENST00000366896		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000350026	ENST00000366894		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000350026	ENST00000338468		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000350026	ENST00000366892		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000346085	ENST00000366898		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000346085	ENST00000366897		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000346085	ENST00000366896		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000346085	ENST00000366894		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000346085	ENST00000338468		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000346085	ENST00000366892		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000367148	ENST00000366898		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000367148	ENST00000366897		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000367148	ENST00000366896		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000367148	ENST00000366894		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000367148	ENST00000338468		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000367148	ENST00000366892		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000275248	ENST00000366898		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000275248	ENST00000366897		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
Frame-shit	ENST00000275248	ENST00000366896		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000275248	ENST00000366894		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000275248	ENST00000338468		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
5CDS-5UTR	ENST00000275248	ENST00000366892		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
intron-3CDS	ENST00000478761	ENST00000366898		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
intron-3CDS	ENST00000478761	ENST00000366897		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
intron-3CDS	ENST00000478761	ENST00000366896		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
intron-5UTR	ENST00000478761	ENST00000366894		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
intron-5UTR	ENST00000478761	ENST00000338468		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
intron-5UTR	ENST00000478761	ENST00000366892		TCGA	RV	LUAD	TCGA-80-5608-01A	ARID1B	chr6	157150555	+	PARK2	chr6	162864505	-
In-frame	ENST00000357668	ENST00000409003		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000357668	ENST00000314727		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000357668	ENST00000527515		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
Frame-shit	ENST00000518721	ENST00000409003		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000518721	ENST00000314727		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000518721	ENST00000527515		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
intron-3CDS	ENST00000520625	ENST00000409003		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
intron-intron	ENST00000520625	ENST00000314727		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
intron-intron	ENST00000520625	ENST00000527515		TCGA	RV	LUAD	TCGA-35-4122-01A	ASAP1	chr8	131370263	-	SAMD12	chr8	119209971	-
5CDS-5UTR	ENST00000379339	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379339	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379339	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379339	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000448924	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000448924	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000448924	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000448924	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000294576	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000294576	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000294576	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000294576	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000421241	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000421241	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000421241	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000421241	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5UTR-5UTR	ENST00000482816	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5UTR-5UTR	ENST00000482816	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5UTR-5UTR	ENST00000482816	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5UTR-5UTR	ENST00000482816	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000437760	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000437760	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000437760	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000437760	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379320	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379320	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379320	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379320	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379319	ENST00000360001		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379319	ENST00000263741		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379319	ENST00000545427		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-5UTR	ENST00000379319	ENST00000459994		TCGA	RV	LUAD	TCGA-91-6836-01A	C1orf159	chr1	1025733	-	SDF4	chr1	1164326	-
5CDS-3UTR	ENST00000358077	ENST00000337006		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000358077	ENST00000376083		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000358077	ENST00000357081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000358077	ENST00000376109		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000358077	ENST00000432218		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000358077	ENST00000376081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000358077	ENST00000491784		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000358077	ENST00000376080		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000472284	ENST00000337006		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000472284	ENST00000376083		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000472284	ENST00000357081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000472284	ENST00000376109		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000472284	ENST00000432218		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000472284	ENST00000376081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000472284	ENST00000491784		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000472284	ENST00000376080		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000469640	ENST00000337006		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000469640	ENST00000376083		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000469640	ENST00000357081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000469640	ENST00000376109		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000469640	ENST00000432218		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000469640	ENST00000376081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000469640	ENST00000491784		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000469640	ENST00000376080		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000408954	ENST00000337006		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000408954	ENST00000376083		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000408954	ENST00000357081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000408954	ENST00000376109		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000408954	ENST00000432218		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000408954	ENST00000376081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000408954	ENST00000491784		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000408954	ENST00000376080		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000491893	ENST00000337006		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000491893	ENST00000376083		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000491893	ENST00000357081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000491893	ENST00000376109		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-3UTR	ENST00000491893	ENST00000432218		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000491893	ENST00000376081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000491893	ENST00000491784		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000491893	ENST00000376080		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-3UTR	ENST00000466188	ENST00000337006		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-3UTR	ENST00000466188	ENST00000376083		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-3UTR	ENST00000466188	ENST00000357081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-3UTR	ENST00000466188	ENST00000376109		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-3UTR	ENST00000466188	ENST00000432218		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-intron	ENST00000466188	ENST00000376081		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-intron	ENST00000466188	ENST00000491784		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
intron-intron	ENST00000466188	ENST00000376080		TCGA	RV	LUAD	TCGA-86-8075-01A	DAPK1	chr9	90114054	+	AGTPBP1	chr9	88236200	-
5CDS-intron	ENST00000371269	ENST00000322776		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000371269	ENST00000532303		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000371269	ENST00000529927		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000371269	ENST00000415352		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000371269	ENST00000526169		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000537443	ENST00000322776		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000537443	ENST00000532303		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000537443	ENST00000529927		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000537443	ENST00000415352		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000537443	ENST00000526169		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000535035	ENST00000322776		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000535035	ENST00000532303		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000535035	ENST00000529927		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000535035	ENST00000415352		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000535035	ENST00000526169		TCGA	RV	LUAD	TCGA-78-7542-01A	DHCR24	chr1	55315306	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000216190	ENST00000404460		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000303908		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000409158		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000403716		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000234115		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000439822		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000487980		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000438882		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000538982		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000409612		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000216190	ENST00000409279		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000404460		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000303908		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000409158		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000403716		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000234115		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000439822		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000487980		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000438882		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000538982		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000409612		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000478547	ENST00000409279		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000404460		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000303908		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000409158		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000403716		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000234115		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000439822		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000487980		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000438882		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000538982		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000409612		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000541106	ENST00000409279		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000404460		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000303908		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000409158		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000403716		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000234115		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000439822		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000487980		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000438882		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000538982		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000409612		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000405442	ENST00000409279		TCGA	RV	LUAD	TCGA-78-7153-01A	EIF3D	chr22	36906902	-	PLEKHB2	chr2	131876464	+
intron-3CDS	ENST00000318522	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000318522	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000318522	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000402711	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000402711	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000402711	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000482660	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000453191	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6216-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
5UTR-3CDS	ENST00000539409	ENST00000266557		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3UTR	ENST00000539409	ENST00000541233		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3CDS	ENST00000337682	ENST00000266557		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3UTR	ENST00000337682	ENST00000541233		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
intron-3CDS	ENST00000454658	ENST00000266557		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
intron-3UTR	ENST00000454658	ENST00000541233		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3CDS	ENST00000395766	ENST00000266557		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3UTR	ENST00000395766	ENST00000541233		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3CDS	ENST00000542983	ENST00000266557		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3UTR	ENST00000542983	ENST00000541233		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3CDS	ENST00000536836	ENST00000266557		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
5UTR-3UTR	ENST00000536836	ENST00000541233		TCGA	RV	LUAD	TCGA-64-5779-01A	FAM60A	chr12	31478958	-	CD27	chr12	6554590	+
Frame-shit	ENST00000381298	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381298	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381298	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000381298	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381298	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000336909	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000336909	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000336909	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000336909	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000336909	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381287	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381287	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381287	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000381287	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381287	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000502326	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000502326	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000502326	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000502326	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000502326	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381294	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381294	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381294	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000381294	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381294	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000536319	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000536319	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000536319	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000536319	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000536319	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381293	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381293	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381293	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000381293	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381293	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381286	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000381286	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381286	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000381286	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000381286	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000522633	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000522633	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000522633	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000522633	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000522633	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000396816	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
Frame-shit	ENST00000396816	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000396816	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-intron	ENST00000396816	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5CDS-5UTR	ENST00000396816	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5UTR-3CDS	ENST00000577363	ENST00000341048		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5UTR-3CDS	ENST00000577363	ENST00000504958		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5UTR-5UTR	ENST00000577363	ENST00000505970		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5UTR-intron	ENST00000577363	ENST00000513241		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
5UTR-5UTR	ENST00000577363	ENST00000434982		TCGA	RV	LUAD	TCGA-05-4427-01A	IL6ST	chr5	55272043	-	ANKRD55	chr5	55412609	-
In-frame	ENST00000374864	ENST00000279022		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
5CDS-intron	ENST00000374864	ENST00000346786		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
In-frame	ENST00000535650	ENST00000279022		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
5CDS-intron	ENST00000535650	ENST00000346786		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
In-frame	ENST00000262650	ENST00000279022		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
5CDS-intron	ENST00000262650	ENST00000346786		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
intron-3CDS	ENST00000483727	ENST00000279022		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
intron-intron	ENST00000483727	ENST00000346786		TCGA	RV	LUAD	TCGA-55-7815-01A	ITCH	chr20	33080402	+	MYL9	chr20	35176435	+
Frame-shit	ENST00000302418	ENST00000397752		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
Frame-shit	ENST00000302418	ENST00000318493		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
5CDS-intron	ENST00000302418	ENST00000436117		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
5CDS-intron	ENST00000302418	ENST00000495962		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
5CDS-intron	ENST00000302418	ENST00000539704		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
intron-3CDS	ENST00000493889	ENST00000397752		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
intron-3CDS	ENST00000493889	ENST00000318493		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
intron-intron	ENST00000493889	ENST00000436117		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
intron-intron	ENST00000493889	ENST00000495962		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
intron-intron	ENST00000493889	ENST00000539704		TCGA	RV	LUAD	TCGA-93-A4JN-01A	KIF5B	chr10	32306071	-	MET	chr7	116411903	+
intron-3CDS	ENST00000261596	ENST00000400569		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000261596	ENST00000356443		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000261596	ENST00000261606		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-intron	ENST00000261596	ENST00000582016		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000581568	ENST00000400569		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000581568	ENST00000356443		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000581568	ENST00000261606		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
intron-intron	ENST00000581568	ENST00000582016		TCGA	RV	LUAD	TCGA-97-A4M3-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3102628	-
5CDS-5UTR	ENST00000580900	ENST00000393179		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000580900	ENST00000313546		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000580900	ENST00000549035		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000580900	ENST00000541909		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000580900	ENST00000549504		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000580900	ENST00000378528		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-intron	ENST00000580900	ENST00000546740		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000380172	ENST00000393179		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000380172	ENST00000313546		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000380172	ENST00000549035		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000380172	ENST00000541909		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000380172	ENST00000549504		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-5UTR	ENST00000380172	ENST00000378528		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5CDS-intron	ENST00000380172	ENST00000546740		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-5UTR	ENST00000460874	ENST00000393179		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-5UTR	ENST00000460874	ENST00000313546		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-5UTR	ENST00000460874	ENST00000549035		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-5UTR	ENST00000460874	ENST00000541909		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-5UTR	ENST00000460874	ENST00000549504		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-5UTR	ENST00000460874	ENST00000378528		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
5UTR-intron	ENST00000460874	ENST00000546740		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-5UTR	ENST00000427788	ENST00000393179		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-5UTR	ENST00000427788	ENST00000313546		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-5UTR	ENST00000427788	ENST00000549035		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-5UTR	ENST00000427788	ENST00000541909		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-5UTR	ENST00000427788	ENST00000549504		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-5UTR	ENST00000427788	ENST00000378528		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-intron	ENST00000427788	ENST00000546740		TCGA	RV	LUAD	TCGA-86-7954-01A	MTAP	chr9	21802780	+	POC1B	chr12	89885892	-
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-3CDS	ENST00000405201	ENST00000376788		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-3CDS	ENST00000405201	ENST00000546215		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404621	ENST00000376788		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404621	ENST00000546215		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404121	ENST00000376788		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000404121	ENST00000546215		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000356219	ENST00000376788		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000356219	ENST00000546215		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000397355	ENST00000376788		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000397355	ENST00000546215		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000429285	ENST00000376788		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-3CDS	ENST00000429285	ENST00000546215		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
5UTR-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	LUAD	TCGA-55-8301-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125284788	-
In-frame	ENST00000312521	ENST00000425792		TCGA	RV	LUAD	TCGA-55-A57B-01A	NR1D2	chr3	24004096	+	UBE2E2	chr3	23574045	+
In-frame	ENST00000312521	ENST00000396703		TCGA	RV	LUAD	TCGA-55-A57B-01A	NR1D2	chr3	24004096	+	UBE2E2	chr3	23574045	+
3UTR-3CDS	ENST00000492552	ENST00000425792		TCGA	RV	LUAD	TCGA-55-A57B-01A	NR1D2	chr3	24004096	+	UBE2E2	chr3	23574045	+
3UTR-3CDS	ENST00000492552	ENST00000396703		TCGA	RV	LUAD	TCGA-55-A57B-01A	NR1D2	chr3	24004096	+	UBE2E2	chr3	23574045	+
In-frame	ENST00000254508	ENST00000535798		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
Frame-shit	ENST00000254508	ENST00000404922		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
Frame-shit	ENST00000254508	ENST00000295760		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
Frame-shit	ENST00000254508	ENST00000492059		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
intron-3CDS	ENST00000485755	ENST00000535798		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
intron-3CDS	ENST00000485755	ENST00000404922		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
intron-3CDS	ENST00000485755	ENST00000295760		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
intron-3CDS	ENST00000485755	ENST00000492059		TCGA	RV	LUAD	TCGA-38-4630-01A	NUP210	chr3	13393379	-	FBLN2	chr3	13679062	+
5UTR-3CDS	ENST00000360540	ENST00000323662		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-intron	ENST00000360540	ENST00000533108		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
Frame-shit	ENST00000544451	ENST00000323662		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5CDS-intron	ENST00000544451	ENST00000533108		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-3CDS	ENST00000519559	ENST00000323662		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-intron	ENST00000519559	ENST00000533108		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-3CDS	ENST00000522514	ENST00000323662		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-intron	ENST00000522514	ENST00000533108		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-3CDS	ENST00000521344	ENST00000323662		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
5UTR-intron	ENST00000521344	ENST00000533108		TCGA	RV	LUAD	TCGA-86-A4D0-01A	PCMTD1	chr8	52811490	-	KIAA1875	chr8	145170846	+
intron-3CDS	ENST00000340635	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000340635	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000340635	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000340635	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000360047	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000360047	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000360047	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000360047	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000507116	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000507116	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000507116	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000507116	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
Frame-shit	ENST00000502484	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
Frame-shit	ENST00000502484	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
Frame-shit	ENST00000502484	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
Frame-shit	ENST00000502484	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
In-frame	ENST00000546160	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
Frame-shit	ENST00000546160	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
Frame-shit	ENST00000546160	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
In-frame	ENST00000546160	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000502575	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000502575	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000502575	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000502575	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000358923	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000358923	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000358923	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000358923	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503258	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503258	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503258	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503258	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000405755	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000405755	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000405755	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000405755	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000317118	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000317118	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000317118	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000317118	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503947	ENST00000508821		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503947	ENST00000425382		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503947	ENST00000438340		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
intron-3CDS	ENST00000503947	ENST00000505959		TCGA	RV	LUAD	TCGA-44-7660-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60050660	-
5CDS-intron	ENST00000261799	ENST00000354817		TCGA	RV	LUAD	TCGA-78-7149-01A	PDGFRB	chr5	149493405	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000261799	ENST00000527202		TCGA	RV	LUAD	TCGA-78-7149-01A	PDGFRB	chr5	149493405	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000261799	ENST00000532502		TCGA	RV	LUAD	TCGA-78-7149-01A	PDGFRB	chr5	149493405	-	FAR1	chr11	13744912	+
intron-intron	ENST00000523456	ENST00000354817		TCGA	RV	LUAD	TCGA-78-7149-01A	PDGFRB	chr5	149493405	-	FAR1	chr11	13744912	+
intron-intron	ENST00000523456	ENST00000527202		TCGA	RV	LUAD	TCGA-78-7149-01A	PDGFRB	chr5	149493405	-	FAR1	chr11	13744912	+
intron-intron	ENST00000523456	ENST00000532502		TCGA	RV	LUAD	TCGA-78-7149-01A	PDGFRB	chr5	149493405	-	FAR1	chr11	13744912	+
5CDS-5UTR	ENST00000377532	ENST00000465508		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377532	ENST00000349363		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377532	ENST00000377577		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377532	ENST00000294401		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377532	ENST00000542246		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377532	ENST00000377573		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-5UTR	ENST00000361923	ENST00000465508		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000361923	ENST00000349363		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000361923	ENST00000377577		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000361923	ENST00000294401		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000361923	ENST00000542246		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000361923	ENST00000377573		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-5UTR	ENST00000377541	ENST00000465508		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377541	ENST00000349363		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377541	ENST00000377577		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377541	ENST00000294401		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377541	ENST00000542246		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
5CDS-intron	ENST00000377541	ENST00000377573		TCGA	RV	LUAD	TCGA-97-7937-01A	PER3	chr1	7861251	+	DNAJC11	chr1	6696306	-
intron-5UTR	ENST00000494598	ENST00000534941		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000494598	ENST00000340171		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
5UTR-5UTR	ENST00000460012	ENST00000534941		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
5UTR-5UTR	ENST00000460012	ENST00000340171		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000447496	ENST00000534941		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000447496	ENST00000340171		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000340059	ENST00000534941		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000340059	ENST00000340171		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000414191	ENST00000534941		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000414191	ENST00000340171		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000334686	ENST00000534941		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-5UTR	ENST00000334686	ENST00000340171		TCGA	RV	LUAD	TCGA-55-8506-01A	PLCH1	chr3	155462629	-	C3orf33	chr3	155520380	-
intron-3UTR	ENST00000394936	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394936	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394936	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394934	ENST00000318789		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394934	ENST00000475937		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000493089		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000484350		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000318779		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000491238		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000498215		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000468577		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000394934	ENST00000472382		TCGA	RV	LUAD	TCGA-55-7995-01A	PSAP	chr10	73576307	-	FOXP1	chr3	71007472	-
In-frame	ENST00000303545	ENST00000487799		TCGA	RV	LUAD	TCGA-69-8254-01A	RNF139	chr8	125487531	+	EIF2A	chr3	150270143	+
In-frame	ENST00000303545	ENST00000460851		TCGA	RV	LUAD	TCGA-69-8254-01A	RNF139	chr8	125487531	+	EIF2A	chr3	150270143	+
In-frame	ENST00000303545	ENST00000406576		TCGA	RV	LUAD	TCGA-69-8254-01A	RNF139	chr8	125487531	+	EIF2A	chr3	150270143	+
In-frame	ENST00000303545	ENST00000273435		TCGA	RV	LUAD	TCGA-69-8254-01A	RNF139	chr8	125487531	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000303545	ENST00000383043		TCGA	RV	LUAD	TCGA-69-8254-01A	RNF139	chr8	125487531	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000303545	ENST00000482471		TCGA	RV	LUAD	TCGA-69-8254-01A	RNF139	chr8	125487531	+	EIF2A	chr3	150270143	+
5CDS-intron	ENST00000318561	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000318561	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000318561	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000318561	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000521315	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000521315	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000521315	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000521315	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000437090	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000437090	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000437090	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000437090	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000520605	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000520605	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000520605	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000520605	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000522109	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000522109	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000522109	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000522109	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000524255	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000524255	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000524255	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000524255	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000522880	ENST00000371754		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000522880	ENST00000469991		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000522880	ENST00000371752		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000522880	ENST00000396105		TCGA	RV	LUAD	TCGA-44-2657-01A	SFTPC	chr8	22021989	+	ZNFX1	chr20	47863418	-
Frame-shit	ENST00000243563	ENST00000378313		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
5CDS-5UTR	ENST00000243563	ENST00000470681		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
5CDS-intron	ENST00000243563	ENST00000594163		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
5CDS-5UTR	ENST00000243563	ENST00000598485		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
5CDS-5UTR	ENST00000243563	ENST00000339153		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
5CDS-5UTR	ENST00000243563	ENST00000598729		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
3UTR-3CDS	ENST00000599570	ENST00000378313		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
3UTR-5UTR	ENST00000599570	ENST00000470681		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
3UTR-intron	ENST00000599570	ENST00000594163		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
3UTR-5UTR	ENST00000599570	ENST00000598485		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
3UTR-5UTR	ENST00000599570	ENST00000339153		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
3UTR-5UTR	ENST00000599570	ENST00000598729		TCGA	RV	LUAD	TCGA-05-4432-01A	SNRPA	chr19	41257386	+	C19orf54	chr19	41251103	-
Frame-shit	ENST00000261716	ENST00000589222		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000261716	ENST00000407086		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000261716	ENST00000390652		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000261716	ENST00000408905		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000261716	ENST00000588462		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000261716	ENST00000585744		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000261716	ENST00000588874		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000261716	ENST00000585812		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000536202	ENST00000589222		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000536202	ENST00000407086		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000536202	ENST00000390652		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000536202	ENST00000408905		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000536202	ENST00000588462		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000536202	ENST00000585744		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000536202	ENST00000588874		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
5CDS-intron	ENST00000536202	ENST00000585812		TCGA	RV	LUAD	TCGA-91-6847-01A	TAOK1	chr17	27838010	+	BCAS3	chr17	58885365	+
Frame-shit	ENST00000359486	ENST00000355630		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000359486	ENST00000396617		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000359486	ENST00000402042		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000359486	ENST00000466278		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000359486	ENST00000407029		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000359486	ENST00000402630		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000335626	ENST00000355630		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000335626	ENST00000396617		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000335626	ENST00000402042		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000335626	ENST00000466278		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000335626	ENST00000407029		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000335626	ENST00000402630		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000404876	ENST00000355630		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000404876	ENST00000396617		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000404876	ENST00000402042		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000404876	ENST00000466278		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000404876	ENST00000407029		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
5CDS-intron	ENST00000404876	ENST00000402630		TCGA	RV	LUAD	TCGA-93-8067-01A	TCF20	chr22	42605657	-	MKL1	chr22	40831558	-
Frame-shit	ENST00000394121	ENST00000264639		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
5CDS-intron	ENST00000394121	ENST00000541736		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
Frame-shit	ENST00000264637	ENST00000264639		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
5CDS-intron	ENST00000264637	ENST00000541736		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
Frame-shit	ENST00000584985	ENST00000264639		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
5CDS-intron	ENST00000584985	ENST00000541736		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
Frame-shit	ENST00000450525	ENST00000264639		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
5CDS-intron	ENST00000450525	ENST00000541736		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
In-frame	ENST00000546243	ENST00000264639		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
5CDS-intron	ENST00000546243	ENST00000541736		TCGA	RV	LUAD	TCGA-95-7043-01A	THRA	chr17	38245586	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000393330	ENST00000367545		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000393330	ENST00000367526		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000393330	ENST00000480333		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000247829	ENST00000367545		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000247829	ENST00000367526		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000247829	ENST00000480333		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000546561	ENST00000367545		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000546561	ENST00000367526		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000546561	ENST00000480333		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000552128	ENST00000367545		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000552128	ENST00000367526		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000552128	ENST00000480333		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000552786	ENST00000367545		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000552786	ENST00000367526		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
intron-intron	ENST00000552786	ENST00000480333		TCGA	RV	LUAD	TCGA-97-7552-01A	TSPAN8	chr12	71518881	-	UTRN	chr6	144665237	+
5CDS-5UTR	ENST00000293218	ENST00000361151		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000361451		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000588933		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000588221		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000592904		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000590306		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000293218	ENST00000592292		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-intron	ENST00000293218	ENST00000588013		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000361151		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000361451		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000588933		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000588221		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000592904		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000590306		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000589666	ENST00000592292		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-intron	ENST00000589666	ENST00000588013		TCGA	RV	LUAD	TCGA-50-5946-01A	UNK	chr17	73781065	+	ZNF266	chr19	9530894	-
5CDS-5UTR	ENST00000601935	ENST00000357654		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000351666		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000309486		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000346315		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000354071		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000352993		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000468300		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000601935	ENST00000591534		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000601935	ENST00000591849		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000601935	ENST00000586385		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000493795		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000471181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601935	ENST00000491747		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000357654		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000351666		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000309486		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000346315		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000354071		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000352993		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000468300		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000600313	ENST00000591534		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000600313	ENST00000591849		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000600313	ENST00000586385		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000493795		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000471181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000600313	ENST00000491747		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000357654		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000351666		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000309486		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000346315		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000354071		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000352993		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000468300		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000596211	ENST00000591534		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000596211	ENST00000591849		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000596211	ENST00000586385		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000493795		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000471181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000596211	ENST00000491747		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000357654		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000351666		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000309486		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000346315		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000354071		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000352993		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000468300		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000359788	ENST00000591534		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000359788	ENST00000591849		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000359788	ENST00000586385		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000493795		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000471181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000359788	ENST00000491747		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000357654		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000351666		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000309486		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000346315		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000354071		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000352993		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000468300		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000601010	ENST00000591534		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000601010	ENST00000591849		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000601010	ENST00000586385		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000493795		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000471181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000601010	ENST00000491747		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000357654		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000351666		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000309486		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000346315		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000354071		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000352993		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000468300		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000599168	ENST00000591534		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000599168	ENST00000591849		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-intron	ENST00000599168	ENST00000586385		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000493795		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000471181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5CDS-5UTR	ENST00000599168	ENST00000491747		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41276132	-
5UTR-3CDS	ENST00000263640	ENST00000283233		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-3CDS	ENST00000263640	ENST00000409187		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000263640	ENST00000536771		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000263640	ENST00000409889		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000263640	ENST00000491563		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-3CDS	ENST00000409283	ENST00000283233		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-3CDS	ENST00000409283	ENST00000409187		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-intron	ENST00000409283	ENST00000536771		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-intron	ENST00000409283	ENST00000409889		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-intron	ENST00000409283	ENST00000491563		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-3CDS	ENST00000434821	ENST00000283233		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-3CDS	ENST00000434821	ENST00000409187		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000434821	ENST00000536771		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000434821	ENST00000409889		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000434821	ENST00000491563		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-3CDS	ENST00000410057	ENST00000283233		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-3CDS	ENST00000410057	ENST00000409187		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000410057	ENST00000536771		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000410057	ENST00000409889		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
5UTR-intron	ENST00000410057	ENST00000491563		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-3CDS	ENST00000487456	ENST00000283233		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-3CDS	ENST00000487456	ENST00000409187		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-intron	ENST00000487456	ENST00000536771		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-intron	ENST00000487456	ENST00000409889		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-intron	ENST00000487456	ENST00000491563		TCGA	RV	LUAD	TCGA-44-7660-01A	ACVR1	chr2	158674897	-	CCDC148	chr2	159035508	-
intron-3CDS	ENST00000298834	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
intron-3CDS	ENST00000426438	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
intron-3CDS	ENST00000314845	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
5UTR-3CDS	ENST00000533727	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
5UTR-3CDS	ENST00000534300	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
intron-3CDS	ENST00000458649	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
5UTR-3CDS	ENST00000528950	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
intron-3CDS	ENST00000529963	ENST00000311956		TCGA	RV	LUAD	TCGA-62-A46R-01A	AMBRA1	chr11	46615378	-	ARHGAP1	chr11	46703732	-
Frame-shit	ENST00000368346	ENST00000368195		TCGA	RV	LUAD	TCGA-91-A4BC-01A	ASH1L	chr1	155490891	-	INSRR	chr1	156824095	-
Frame-shit	ENST00000392403	ENST00000368195		TCGA	RV	LUAD	TCGA-91-A4BC-01A	ASH1L	chr1	155490891	-	INSRR	chr1	156824095	-
Frame-shit	ENST00000548830	ENST00000368195		TCGA	RV	LUAD	TCGA-91-A4BC-01A	ASH1L	chr1	155490891	-	INSRR	chr1	156824095	-
intron-3CDS	ENST00000379441	ENST00000257963		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000379441	ENST00000541224		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000379441	ENST00000426655		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000379441	ENST00000415850		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-5UTR	ENST00000379441	ENST00000542485		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-intron	ENST00000379441	ENST00000563121		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000179765	ENST00000257963		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000179765	ENST00000541224		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000179765	ENST00000426655		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000179765	ENST00000415850		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-5UTR	ENST00000179765	ENST00000542485		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-intron	ENST00000179765	ENST00000563121		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000551812	ENST00000257963		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000551812	ENST00000541224		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000551812	ENST00000426655		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000551812	ENST00000415850		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-5UTR	ENST00000551812	ENST00000542485		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-intron	ENST00000551812	ENST00000563121		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000549884	ENST00000257963		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000549884	ENST00000541224		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000549884	ENST00000426655		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000549884	ENST00000415850		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5UTR-5UTR	ENST00000549884	ENST00000542485		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5UTR-intron	ENST00000549884	ENST00000563121		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000257963		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000541224		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000426655		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000415850		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-5UTR	ENST00000553222	ENST00000542485		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
intron-intron	ENST00000553222	ENST00000563121		TCGA	RV	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57023909	-	ACVR1B	chr12	52369049	+
5CDS-3UTR	ENST00000216267	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
5CDS-3UTR	ENST00000404034	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
5CDS-3UTR	ENST00000404760	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
5CDS-3UTR	ENST00000457780	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
5CDS-3UTR	ENST00000542442	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
5CDS-3UTR	ENST00000342989	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
intron-3UTR	ENST00000459821	ENST00000249044		TCGA	RV	LUAD	TCGA-MP-A4TI-01A	BRD1	chr22	50187682	-	APOL5	chr22	36125401	+
Frame-shit	ENST00000320631	ENST00000301887		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000320631	ENST00000435842		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000320631	ENST00000527716		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
In-frame	ENST00000359393	ENST00000301887		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000359393	ENST00000435842		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
5CDS-5UTR	ENST00000359393	ENST00000527716		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
intron-3CDS	ENST00000488711	ENST00000301887		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
intron-5UTR	ENST00000488711	ENST00000435842		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
intron-5UTR	ENST00000488711	ENST00000527716		TCGA	RV	LUAD	TCGA-44-6778-01A	EHD1	chr11	64641893	-	BATF2	chr11	64757284	-
In-frame	ENST00000543086	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000543086	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000543086	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
In-frame	ENST00000546231	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000546231	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000546231	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
In-frame	ENST00000397203	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000397203	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000397203	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
In-frame	ENST00000360905	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000360905	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000360905	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
In-frame	ENST00000589028	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000589028	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000589028	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
In-frame	ENST00000355446	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000355446	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
5CDS-intron	ENST00000355446	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
intron-3CDS	ENST00000536573	ENST00000261405		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
intron-intron	ENST00000536573	ENST00000572068		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
intron-intron	ENST00000536573	ENST00000545906		TCGA	RV	LUAD	TCGA-05-4415-01A	ERC1	chr12	1372331	+	VWF	chr12	6085426	-
intron-intron	ENST00000541502	ENST00000244047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
intron-intron	ENST00000541502	ENST00000350849		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
intron-intron	ENST00000541502	ENST00000348616		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
intron-3UTR	ENST00000541502	ENST00000497614		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
intron-intron	ENST00000541502	ENST00000244049		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000409404	ENST00000244047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000409404	ENST00000350849		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000409404	ENST00000348616		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-3UTR	ENST00000409404	ENST00000497614		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000409404	ENST00000244049		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000298047	ENST00000244047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000298047	ENST00000350849		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000298047	ENST00000348616		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-3UTR	ENST00000298047	ENST00000497614		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000298047	ENST00000244049		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000525166	ENST00000244047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000525166	ENST00000350849		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000525166	ENST00000348616		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-3UTR	ENST00000525166	ENST00000497614		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000525166	ENST00000244049		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000533797	ENST00000244047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000533797	ENST00000350849		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000533797	ENST00000348616		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-3UTR	ENST00000533797	ENST00000497614		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000533797	ENST00000244049		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
3UTR-intron	ENST00000489716	ENST00000244047		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
3UTR-intron	ENST00000489716	ENST00000350849		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
3UTR-intron	ENST00000489716	ENST00000348616		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
3UTR-3UTR	ENST00000489716	ENST00000497614		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
3UTR-intron	ENST00000489716	ENST00000244049		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58577868	+
5CDS-intron	ENST00000583610	ENST00000299240		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000583610	ENST00000039989		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000583610	ENST00000526774		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000394294	ENST00000299240		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000394294	ENST00000039989		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000394294	ENST00000526774		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000264658	ENST00000299240		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000264658	ENST00000039989		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000264658	ENST00000526774		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000577399	ENST00000299240		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000577399	ENST00000039989		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
5CDS-intron	ENST00000577399	ENST00000526774		TCGA	RV	LUAD	TCGA-86-A4P7-01A	FBXL20	chr17	37499433	-	TTC17	chr11	43511789	+
Frame-shit	ENST00000253928	ENST00000354817		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
5CDS-intron	ENST00000253928	ENST00000527202		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
5CDS-intron	ENST00000253928	ENST00000532502		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
Frame-shit	ENST00000399667	ENST00000354817		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
5CDS-intron	ENST00000399667	ENST00000527202		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
5CDS-intron	ENST00000399667	ENST00000532502		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
Frame-shit	ENST00000416288	ENST00000354817		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
5CDS-intron	ENST00000416288	ENST00000527202		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
5CDS-intron	ENST00000416288	ENST00000532502		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
3UTR-3CDS	ENST00000570752	ENST00000354817		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
3UTR-intron	ENST00000570752	ENST00000527202		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
3UTR-intron	ENST00000570752	ENST00000532502		TCGA	RV	LUAD	TCGA-38-4630-01A	FLYWCH1	chr16	2990093	+	FAR1	chr11	13749103	+
intron-3CDS	ENST00000398810	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398810	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398810	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398810	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-intron	ENST00000398810	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000439599	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000439599	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000439599	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000439599	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-intron	ENST00000439599	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398812	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398812	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398812	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000398812	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-intron	ENST00000398812	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000335866	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000335866	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000335866	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000335866	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-intron	ENST00000335866	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402578	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402578	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402578	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402578	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-intron	ENST00000402578	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000403097	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000403097	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000403097	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000403097	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-intron	ENST00000403097	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000406641	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000406641	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000406641	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000406641	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-intron	ENST00000406641	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000357271	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000357271	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000357271	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000357271	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-intron	ENST00000357271	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000407526	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000407526	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000407526	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000407526	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-intron	ENST00000407526	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000401949	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000401949	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000401949	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-3CDS	ENST00000401949	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5UTR-intron	ENST00000401949	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402497	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402497	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402497	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-3CDS	ENST00000402497	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
intron-intron	ENST00000402497	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
Frame-shit	ENST00000483819	ENST00000402746		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
Frame-shit	ENST00000483819	ENST00000399654		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
Frame-shit	ENST00000483819	ENST00000406869		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
Frame-shit	ENST00000483819	ENST00000265854		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
5CDS-intron	ENST00000483819	ENST00000486340		TCGA	RV	LUAD	TCGA-05-4415-01A	GRB10	chr7	50823584	-	MAD1L1	chr7	2188873	-
In-frame	ENST00000375431	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
5CDS-intron	ENST00000375431	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
In-frame	ENST00000326039	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
5CDS-intron	ENST00000326039	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
In-frame	ENST00000375430	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
5CDS-intron	ENST00000375430	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
intron-3CDS	ENST00000476439	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
intron-intron	ENST00000476439	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	GRTP1	chr13	113999178	-	COL4A2	chr13	111154015	+
Frame-shit	ENST00000267615	ENST00000334746		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000267615	ENST00000554565		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000267615	ENST00000393170		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000267615	ENST00000298896		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000267615	ENST00000555525		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000354313	ENST00000334746		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000354313	ENST00000554565		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000354313	ENST00000393170		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000354313	ENST00000298896		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000354313	ENST00000555525		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000556603	ENST00000334746		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000556603	ENST00000554565		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000556603	ENST00000393170		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000556603	ENST00000298896		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000556603	ENST00000555525		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
In-frame	ENST00000555495	ENST00000334746		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
In-frame	ENST00000555495	ENST00000554565		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
In-frame	ENST00000555495	ENST00000393170		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000555495	ENST00000298896		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5CDS-intron	ENST00000555495	ENST00000555525		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5UTR-3CDS	ENST00000556954	ENST00000334746		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5UTR-3CDS	ENST00000556954	ENST00000554565		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5UTR-3CDS	ENST00000556954	ENST00000393170		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5UTR-intron	ENST00000556954	ENST00000298896		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
5UTR-intron	ENST00000556954	ENST00000555525		TCGA	RV	LUAD	TCGA-38-4630-01A	ITPK1	chr14	93418291	-	BTBD7	chr14	93717998	-
Frame-shit	ENST00000381340	ENST00000336061		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000381340	ENST00000542104		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000381340	ENST00000540088		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
intron-3CDS	ENST00000545902	ENST00000336061		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
intron-3CDS	ENST00000545902	ENST00000542104		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
intron-intron	ENST00000545902	ENST00000540088		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000242737	ENST00000336061		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000242737	ENST00000542104		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000242737	ENST00000540088		TCGA	RV	LUAD	TCGA-55-1592-01A	ITPR2	chr12	26943090	-	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000399353	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399353	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399353	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399353	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399353	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000381318	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381318	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381318	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381318	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381318	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000381291	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381291	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381291	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381291	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381291	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000381285	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381285	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381285	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381285	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000381285	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000399367	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399367	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399367	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399367	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399367	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000399352	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399352	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399352	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399352	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399352	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000399355	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399355	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399355	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399355	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399355	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-3CDS	ENST00000399349	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399349	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399349	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399349	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
5UTR-intron	ENST00000399349	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-3CDS	ENST00000399338	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399338	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399338	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399338	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399338	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-3CDS	ENST00000379960	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000379960	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000379960	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000379960	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000379960	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-3CDS	ENST00000437442	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000437442	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000437442	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000437442	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000437442	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-3CDS	ENST00000399326	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399326	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399326	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399326	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000399326	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-3CDS	ENST00000488166	ENST00000377122		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000488166	ENST00000417816		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000488166	ENST00000377159		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000488166	ENST00000377119		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-intron	ENST00000488166	ENST00000464278		TCGA	RV	LUAD	TCGA-O1-A52J-01A	ITSN1	chr21	35015019	+	NEBL	chr10	21139431	-
intron-3CDS	ENST00000382303	ENST00000453981		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-3CDS	ENST00000382303	ENST00000432829		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-3CDS	ENST00000382303	ENST00000469391		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-intron	ENST00000382303	ENST00000382331		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-intron	ENST00000382303	ENST00000382329		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-intron	ENST00000382303	ENST00000493666		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
3UTR-3CDS	ENST00000489369	ENST00000453981		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
3UTR-3CDS	ENST00000489369	ENST00000432829		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
3UTR-3CDS	ENST00000489369	ENST00000469391		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
3UTR-intron	ENST00000489369	ENST00000382331		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
3UTR-intron	ENST00000489369	ENST00000382329		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
3UTR-intron	ENST00000489369	ENST00000493666		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
5UTR-3CDS	ENST00000382297	ENST00000453981		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
5UTR-3CDS	ENST00000382297	ENST00000432829		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
5UTR-3CDS	ENST00000382297	ENST00000469391		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
5UTR-intron	ENST00000382297	ENST00000382331		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
5UTR-intron	ENST00000382297	ENST00000382329		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
5UTR-intron	ENST00000382297	ENST00000493666		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-3CDS	ENST00000382293	ENST00000453981		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-3CDS	ENST00000382293	ENST00000432829		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-3CDS	ENST00000382293	ENST00000469391		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-intron	ENST00000382293	ENST00000382331		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-intron	ENST00000382293	ENST00000382329		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
intron-intron	ENST00000382293	ENST00000493666		TCGA	RV	LUAD	TCGA-05-4426-01A	KANK1	chr9	504754	+	DOCK8	chr9	463517	+
In-frame	ENST00000306688	ENST00000378609		TCGA	RV	LUAD	TCGA-44-6778-01A	LRRC45	chr17	79987061	+	GNB1	chr1	1749314	-
5CDS-intron	ENST00000306688	ENST00000472614		TCGA	RV	LUAD	TCGA-44-6778-01A	LRRC45	chr17	79987061	+	GNB1	chr1	1749314	-
intron-3CDS	ENST00000583383	ENST00000378609		TCGA	RV	LUAD	TCGA-44-6778-01A	LRRC45	chr17	79987061	+	GNB1	chr1	1749314	-
intron-intron	ENST00000583383	ENST00000472614		TCGA	RV	LUAD	TCGA-44-6778-01A	LRRC45	chr17	79987061	+	GNB1	chr1	1749314	-
intron-3UTR	ENST00000244217	ENST00000418066		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000244217	ENST00000409920		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000244217	ENST00000394295		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000244217	ENST00000536030		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-3UTR	ENST00000462609	ENST00000418066		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000462609	ENST00000409920		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000462609	ENST00000394295		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000462609	ENST00000536030		TCGA	RV	LUAD	TCGA-55-8615-01A	MCEE	chr2	71356847	-	ANXA4	chr2	70008652	+
In-frame	ENST00000540320	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
5CDS-3UTR	ENST00000540320	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
In-frame	ENST00000400445	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
5CDS-3UTR	ENST00000400445	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
In-frame	ENST00000310336	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
5CDS-3UTR	ENST00000310336	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
In-frame	ENST00000379939	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
5CDS-3UTR	ENST00000379939	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
intron-3CDS	ENST00000537702	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
intron-3UTR	ENST00000537702	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
intron-3CDS	ENST00000379922	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
intron-3UTR	ENST00000379922	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
intron-3CDS	ENST00000461581	ENST00000218652		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
intron-3UTR	ENST00000461581	ENST00000494647		TCGA	RV	LUAD	TCGA-50-6591-01A	NBEA	chr13	35517251	+	NDFIP2	chr13	80094945	+
5UTR-3CDS	ENST00000282516	ENST00000308664		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-3CDS	ENST00000282516	ENST00000395494		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-3CDS	ENST00000282516	ENST00000539276		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-intron	ENST00000282516	ENST00000550248		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-5UTR	ENST00000282516	ENST00000552636		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-3CDS	ENST00000448238	ENST00000308664		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-3CDS	ENST00000448238	ENST00000395494		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-3CDS	ENST00000448238	ENST00000539276		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-intron	ENST00000448238	ENST00000550248		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
5UTR-5UTR	ENST00000448238	ENST00000552636		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
intron-3CDS	ENST00000504430	ENST00000308664		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
intron-3CDS	ENST00000504430	ENST00000395494		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
intron-3CDS	ENST00000504430	ENST00000539276		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
intron-intron	ENST00000504430	ENST00000550248		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
intron-5UTR	ENST00000504430	ENST00000552636		TCGA	RV	LUAD	TCGA-95-7043-01A	NIPBL	chr5	36877280	+	ATP2A2	chr12	110720409	+
Frame-shit	ENST00000436639	ENST00000454859		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000436639	ENST00000474289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000528402		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000454591		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000368291		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000309620		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000430841		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000368289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000436639	ENST00000531967		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000436639	ENST00000488087		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000302071	ENST00000454859		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000302071	ENST00000474289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000528402		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000454591		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000368291		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000309620		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000430841		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000368289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000302071	ENST00000531967		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000302071	ENST00000488087		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000356644	ENST00000454859		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000356644	ENST00000474289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000528402		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000454591		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000368291		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000309620		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000430841		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000368289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000356644	ENST00000531967		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000356644	ENST00000488087		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3CDS	ENST00000517548	ENST00000454859		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3CDS	ENST00000517548	ENST00000474289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000528402		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000454591		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000368291		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000309620		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000430841		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000368289		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000517548	ENST00000531967		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
5UTR-5UTR	ENST00000517548	ENST00000488087		TCGA	RV	LUAD	TCGA-97-8174-01A	SESN1	chr6	109414998	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000264930	ENST00000551577		TCGA	RV	LUAD	TCGA-55-6982-01A	SLC12A7	chr5	1094269	-	TMEM117	chr12	44693363	+
Frame-shit	ENST00000264930	ENST00000266534		TCGA	RV	LUAD	TCGA-55-6982-01A	SLC12A7	chr5	1094269	-	TMEM117	chr12	44693363	+
Frame-shit	ENST00000264930	ENST00000536799		TCGA	RV	LUAD	TCGA-55-6982-01A	SLC12A7	chr5	1094269	-	TMEM117	chr12	44693363	+
5CDS-intron	ENST00000264930	ENST00000546978		TCGA	RV	LUAD	TCGA-55-6982-01A	SLC12A7	chr5	1094269	-	TMEM117	chr12	44693363	+
In-frame	ENST00000331159	ENST00000308488		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
In-frame	ENST00000331159	ENST00000360355		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
5CDS-intron	ENST00000331159	ENST00000480887		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
5CDS-intron	ENST00000331159	ENST00000530604		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
In-frame	ENST00000577233	ENST00000308488		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
In-frame	ENST00000577233	ENST00000360355		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
5CDS-intron	ENST00000577233	ENST00000480887		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
5CDS-intron	ENST00000577233	ENST00000530604		TCGA	RV	LUAD	TCGA-78-7150-01A	SOCS7	chr17	36533668	+	RSF1	chr11	77475734	-
In-frame	ENST00000343526	ENST00000376214		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
In-frame	ENST00000343526	ENST00000376213		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000395882		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000304053		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000376208		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000277120		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000323115		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000359847		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000343526	ENST00000395866		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
In-frame	ENST00000415680	ENST00000376214		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
In-frame	ENST00000415680	ENST00000376213		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000395882		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000304053		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000376208		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000277120		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000323115		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000359847		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
5CDS-intron	ENST00000415680	ENST00000395866		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-3CDS	ENST00000497516	ENST00000376214		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-3CDS	ENST00000497516	ENST00000376213		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000395882		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000304053		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000376208		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000277120		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000323115		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000359847		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-intron	ENST00000497516	ENST00000395866		TCGA	RV	LUAD	TCGA-55-8091-01A	TRIM24	chr7	138258387	+	NTRK2	chr9	87482158	+
intron-3CDS	ENST00000596528	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-intron	ENST00000596528	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
5CDS-intron	ENST00000599743	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
5CDS-intron	ENST00000300619	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-intron	ENST00000397082	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-02A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
Frame-shit	ENST00000295903	ENST00000301831		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
5CDS-intron	ENST00000295903	ENST00000420927		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
5CDS-intron	ENST00000295903	ENST00000489118		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
5CDS-intron	ENST00000295903	ENST00000414606		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
Frame-shit	ENST00000498707	ENST00000301831		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
5CDS-intron	ENST00000498707	ENST00000420927		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
5CDS-intron	ENST00000498707	ENST00000489118		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
5CDS-intron	ENST00000498707	ENST00000414606		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-3CDS	ENST00000467257	ENST00000301831		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-intron	ENST00000467257	ENST00000420927		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-intron	ENST00000467257	ENST00000489118		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-intron	ENST00000467257	ENST00000414606		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-3CDS	ENST00000459780	ENST00000301831		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-intron	ENST00000459780	ENST00000420927		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-intron	ENST00000459780	ENST00000489118		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-intron	ENST00000459780	ENST00000414606		TCGA	RV	LUAD	TCGA-38-4630-01A	ADAMTS9	chr3	64635313	-	ULK4	chr3	41877463	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2662-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000452722	ENST00000392859		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000452722	ENST00000359415		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000452722	ENST00000534182		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000452722	ENST00000264028		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5UTR-3CDS	ENST00000537140	ENST00000392859		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5UTR-3CDS	ENST00000537140	ENST00000359415		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5UTR-intron	ENST00000537140	ENST00000534182		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5UTR-intron	ENST00000537140	ENST00000264028		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000542447	ENST00000392859		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000542447	ENST00000359415		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000542447	ENST00000534182		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000542447	ENST00000264028		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000537058	ENST00000392859		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000537058	ENST00000359415		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000537058	ENST00000534182		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000537058	ENST00000264028		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000536727	ENST00000392859		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000536727	ENST00000359415		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000536727	ENST00000534182		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000536727	ENST00000264028		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000331581	ENST00000392859		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
Frame-shit	ENST00000331581	ENST00000359415		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000331581	ENST00000534182		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-intron	ENST00000331581	ENST00000264028		TCGA	RV	LUAD	TCGA-38-4632-01A	CADM1	chr11	115374989	-	ARCN1	chr11	118468422	+
5CDS-3UTR	ENST00000318003	ENST00000377948		TCGA	RV	LUAD	TCGA-38-4630-01A	CC2D1A	chr19	14030015	+	RNF207	chr1	6278349	+
5CDS-3UTR	ENST00000318003	ENST00000377939		TCGA	RV	LUAD	TCGA-38-4630-01A	CC2D1A	chr19	14030015	+	RNF207	chr1	6278349	+
5CDS-3UTR	ENST00000318003	ENST00000483336		TCGA	RV	LUAD	TCGA-38-4630-01A	CC2D1A	chr19	14030015	+	RNF207	chr1	6278349	+
5CDS-3UTR	ENST00000589606	ENST00000377948		TCGA	RV	LUAD	TCGA-38-4630-01A	CC2D1A	chr19	14030015	+	RNF207	chr1	6278349	+
5CDS-3UTR	ENST00000589606	ENST00000377939		TCGA	RV	LUAD	TCGA-38-4630-01A	CC2D1A	chr19	14030015	+	RNF207	chr1	6278349	+
5CDS-3UTR	ENST00000589606	ENST00000483336		TCGA	RV	LUAD	TCGA-38-4630-01A	CC2D1A	chr19	14030015	+	RNF207	chr1	6278349	+
Frame-shit	ENST00000265734	ENST00000548724		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000265734	ENST00000396700		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000265734	ENST00000323944		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000265734	ENST00000419632		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
In-frame	ENST00000265734	ENST00000546511		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000265734	ENST00000550887		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
5CDS-intron	ENST00000265734	ENST00000358326		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
5CDS-intron	ENST00000265734	ENST00000548369		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000424848	ENST00000548724		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000424848	ENST00000396700		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
In-frame	ENST00000424848	ENST00000323944		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
In-frame	ENST00000424848	ENST00000419632		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
Frame-shit	ENST00000424848	ENST00000546511		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
In-frame	ENST00000424848	ENST00000550887		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
5CDS-intron	ENST00000424848	ENST00000358326		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
5CDS-intron	ENST00000424848	ENST00000548369		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-3CDS	ENST00000491250	ENST00000548724		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-3CDS	ENST00000491250	ENST00000396700		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-3CDS	ENST00000491250	ENST00000323944		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-3CDS	ENST00000491250	ENST00000419632		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-3CDS	ENST00000491250	ENST00000546511		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-3CDS	ENST00000491250	ENST00000550887		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-intron	ENST00000491250	ENST00000358326		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
intron-intron	ENST00000491250	ENST00000548369		TCGA	RV	LUAD	TCGA-44-7670-01A	CDK6	chr7	92462405	-	STXBP6	chr14	25281938	-
In-frame	ENST00000366542	ENST00000331110		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000348120		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000366563		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000366564		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000366565		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000446183		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000366562		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000401882		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366542	ENST00000407727		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000331110		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000348120		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000366563		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000366564		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000366565		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000446183		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000366562		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000401882		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366543	ENST00000407727		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000331110		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000348120		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000366563		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000366564		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000366565		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000446183		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000366562		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000401882		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
In-frame	ENST00000366544	ENST00000407727		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000331110		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000348120		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000366563		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000366564		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000366565		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000446183		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000366562		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000401882		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000468254	ENST00000407727		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000331110		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000348120		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000366563		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000366564		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000366565		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000446183		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000366562		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000401882		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000481987	ENST00000407727		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000331110		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000348120		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000366563		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000366564		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000366565		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000446183		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000366562		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000401882		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-3CDS	ENST00000490813	ENST00000407727		TCGA	RV	LUAD	TCGA-44-8119-01A	CEP170	chr1	243385026	-	RGS7	chr1	240990472	-
intron-intron	ENST00000375441	ENST00000216297		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000375441	ENST00000555943		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000451881	ENST00000216297		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000451881	ENST00000555943		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000326335	ENST00000216297		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000326335	ENST00000555943		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000375440	ENST00000216297		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000375440	ENST00000555943		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000463426	ENST00000216297		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000463426	ENST00000555943		TCGA	RV	LUAD	TCGA-55-8620-01A	CUL4A	chr13	113919391	+	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000266037	ENST00000254480		TCGA	RV	LUAD	TCGA-38-4630-01A	DOCK3	chr3	50712731	+	SMARCC1	chr3	47663831	-
5CDS-5UTR	ENST00000266037	ENST00000425518		TCGA	RV	LUAD	TCGA-38-4630-01A	DOCK3	chr3	50712731	+	SMARCC1	chr3	47663831	-
5UTR-3CDS	ENST00000232125	ENST00000490131		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
5UTR-3CDS	ENST00000232125	ENST00000498619		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
5UTR-3CDS	ENST00000232125	ENST00000296154		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
Frame-shit	ENST00000477892	ENST00000490131		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
Frame-shit	ENST00000477892	ENST00000498619		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
Frame-shit	ENST00000477892	ENST00000296154		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
Frame-shit	ENST00000469967	ENST00000490131		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
Frame-shit	ENST00000469967	ENST00000498619		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
Frame-shit	ENST00000469967	ENST00000296154		TCGA	RV	LUAD	TCGA-91-8499-01A	FAM162A	chr3	122103146	+	CASR	chr3	121980375	+
5CDS-3UTR	ENST00000377967	ENST00000577702		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000377967	ENST00000310827		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000377967	ENST00000431926		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000377967	ENST00000415273		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000382899	ENST00000577702		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000382899	ENST00000310827		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000382899	ENST00000431926		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000382899	ENST00000415273		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000536777	ENST00000577702		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000536777	ENST00000310827		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000536777	ENST00000431926		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000536777	ENST00000415273		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000543216	ENST00000577702		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000543216	ENST00000310827		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000543216	ENST00000431926		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000543216	ENST00000415273		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000479423	ENST00000577702		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000479423	ENST00000310827		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
intron-3UTR	ENST00000479423	ENST00000431926		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
intron-intron	ENST00000479423	ENST00000415273		TCGA	RV	LUAD	TCGA-71-6725-01A	KDM6A	chrX	44733233	+	DCAF7	chr17	61655831	+
In-frame	ENST00000355630	ENST00000342878		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	MKL1	chr22	40859225	-	SCGB1C1	chr11	194418	+
In-frame	ENST00000396617	ENST00000342878		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	MKL1	chr22	40859225	-	SCGB1C1	chr11	194418	+
In-frame	ENST00000402042	ENST00000342878		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	MKL1	chr22	40859225	-	SCGB1C1	chr11	194418	+
intron-3CDS	ENST00000466278	ENST00000342878		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	MKL1	chr22	40859225	-	SCGB1C1	chr11	194418	+
In-frame	ENST00000407029	ENST00000342878		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	MKL1	chr22	40859225	-	SCGB1C1	chr11	194418	+
In-frame	ENST00000402630	ENST00000342878		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	MKL1	chr22	40859225	-	SCGB1C1	chr11	194418	+
Frame-shit	ENST00000421797	ENST00000405709		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000421797	ENST00000331762		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000421797	ENST00000452895		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000421797	ENST00000415362		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000421797	ENST00000447215		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000421797	ENST00000437687		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000421797	ENST00000489381		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000421797	ENST00000450877		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000429546	ENST00000405709		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000429546	ENST00000331762		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000429546	ENST00000452895		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000429546	ENST00000415362		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000429546	ENST00000447215		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000429546	ENST00000437687		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000429546	ENST00000489381		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000429546	ENST00000450877		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000352689	ENST00000405709		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000352689	ENST00000331762		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000352689	ENST00000452895		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000352689	ENST00000415362		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000352689	ENST00000447215		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000352689	ENST00000437687		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000352689	ENST00000489381		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000352689	ENST00000450877		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000498778	ENST00000405709		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000498778	ENST00000331762		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000498778	ENST00000452895		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000498778	ENST00000415362		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000498778	ENST00000447215		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000498778	ENST00000437687		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000498778	ENST00000489381		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000498778	ENST00000450877		TCGA	RV	LUAD	TCGA-38-4631-01A	MKLN1	chr7	131130662	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000229179	ENST00000543264		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
Frame-shit	ENST00000229179	ENST00000599689		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
5CDS-intron	ENST00000229179	ENST00000600475		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
Frame-shit	ENST00000378905	ENST00000543264		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
Frame-shit	ENST00000378905	ENST00000599689		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
5CDS-intron	ENST00000378905	ENST00000600475		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
Frame-shit	ENST00000539906	ENST00000543264		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
Frame-shit	ENST00000539906	ENST00000599689		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
5CDS-intron	ENST00000539906	ENST00000600475		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
intron-3CDS	ENST00000401003	ENST00000543264		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
intron-3CDS	ENST00000401003	ENST00000599689		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
intron-intron	ENST00000401003	ENST00000600475		TCGA	RV	LUAD	TCGA-55-8506-01A	NUP107	chr12	69109520	+	SHD	chr19	4290444	+
In-frame	ENST00000265421	ENST00000356136		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
In-frame	ENST00000265421	ENST00000528420		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5CDS-5UTR	ENST00000265421	ENST00000533454		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5CDS-5UTR	ENST00000265421	ENST00000531818		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5CDS-5UTR	ENST00000265421	ENST00000532130		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5CDS-5UTR	ENST00000265421	ENST00000539288		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5CDS-intron	ENST00000265421	ENST00000525872		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5CDS-intron	ENST00000265421	ENST00000538870		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-3CDS	ENST00000538005	ENST00000356136		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-3CDS	ENST00000538005	ENST00000528420		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-5UTR	ENST00000538005	ENST00000533454		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-5UTR	ENST00000538005	ENST00000531818		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-5UTR	ENST00000538005	ENST00000532130		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-5UTR	ENST00000538005	ENST00000539288		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-intron	ENST00000538005	ENST00000525872		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
5UTR-intron	ENST00000538005	ENST00000538870		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-3CDS	ENST00000530566	ENST00000356136		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-3CDS	ENST00000530566	ENST00000528420		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000530566	ENST00000533454		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000530566	ENST00000531818		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000530566	ENST00000532130		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000530566	ENST00000539288		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-intron	ENST00000530566	ENST00000525872		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-intron	ENST00000530566	ENST00000538870		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-3CDS	ENST00000521492	ENST00000356136		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-3CDS	ENST00000521492	ENST00000528420		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000521492	ENST00000533454		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000521492	ENST00000531818		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000521492	ENST00000532130		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-5UTR	ENST00000521492	ENST00000539288		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-intron	ENST00000521492	ENST00000525872		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
intron-intron	ENST00000521492	ENST00000538870		TCGA	RV	LUAD	TCGA-95-8039-01A	POLB	chr8	42202537	+	UVRAG	chr11	75719851	+
In-frame	ENST00000234310	ENST00000409718		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000358677		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000409988		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000409385		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000451764		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000360760		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000409140		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000409755		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000234310	ENST00000409151		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
5CDS-intron	ENST00000234310	ENST00000460095		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000409718		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000358677		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000409988		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000409385		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000451764		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000360760		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000409140		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000409755		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
In-frame	ENST00000409752	ENST00000409151		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
5CDS-intron	ENST00000409752	ENST00000460095		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000409718		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000358677		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000409988		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000409385		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000451764		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000360760		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000409140		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000409755		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
Frame-shit	ENST00000409377	ENST00000409151		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
5CDS-intron	ENST00000409377	ENST00000460095		TCGA	RV	LUAD	TCGA-73-4676-01A	PPP3R1	chr2	68444224	-	SPATS2L	chr2	201305372	+
5CDS-5UTR	ENST00000299084	ENST00000559502		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
5CDS-5UTR	ENST00000299084	ENST00000558158		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
5CDS-5UTR	ENST00000299084	ENST00000540944		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
5CDS-5UTR	ENST00000299084	ENST00000319669		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
3UTR-5UTR	ENST00000561205	ENST00000559502		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
3UTR-5UTR	ENST00000561205	ENST00000558158		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
3UTR-5UTR	ENST00000561205	ENST00000540944		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
3UTR-5UTR	ENST00000561205	ENST00000319669		TCGA	RV	LUAD	TCGA-05-4427-01A	SPRED1	chr15	38545418	+	TMCO5A	chr15	38227458	+
In-frame	ENST00000355683	ENST00000250457		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
In-frame	ENST00000355683	ENST00000553215		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000355683	ENST00000547327		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000355683	ENST00000557521		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
In-frame	ENST00000357479	ENST00000250457		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
In-frame	ENST00000357479	ENST00000553215		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000357479	ENST00000547327		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
5CDS-intron	ENST00000357479	ENST00000557521		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
intron-3CDS	ENST00000366206	ENST00000250457		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
intron-3CDS	ENST00000366206	ENST00000553215		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
intron-intron	ENST00000366206	ENST00000547327		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
intron-intron	ENST00000366206	ENST00000557521		TCGA	RV	LUAD	TCGA-78-8660-01A	STRN3	chr14	31495110	-	EGLN3	chr14	34400421	-
intron-intron	ENST00000519416	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000519416	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000519416	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520615	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520615	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520615	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000443286	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000443286	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000443286	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520340	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520340	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520340	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000518415	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000518415	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000518415	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000522752	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000522752	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000522752	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000348567	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000348567	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000348567	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000330691	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000330691	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000330691	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000317827	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000317827	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000317827	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000379931	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000379931	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000379931	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000276520	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000276520	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000276520	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520973	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520973	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520973	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520611	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520611	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000520611	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	TACC1	chr8	38710546	+	ANKS1A	chr6	34977682	+
5CDS-5UTR	ENST00000398022	ENST00000357410		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000398022	ENST00000327619		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000398022	ENST00000497428		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000398022	ENST00000317304		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000217315	ENST00000357410		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000217315	ENST00000327619		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000217315	ENST00000497428		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000217315	ENST00000317304		TCGA	RV	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30746317	+	EYA2	chr20	45618640	+
In-frame	ENST00000399537	ENST00000425013		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
In-frame	ENST00000399537	ENST00000389902		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
5CDS-5UTR	ENST00000399537	ENST00000469375		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
In-frame	ENST00000430969	ENST00000425013		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
In-frame	ENST00000430969	ENST00000389902		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
5CDS-5UTR	ENST00000430969	ENST00000469375		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
Frame-shit	ENST00000399434	ENST00000425013		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
Frame-shit	ENST00000399434	ENST00000389902		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
5CDS-5UTR	ENST00000399434	ENST00000469375		TCGA	RV	LUAD	TCGA-78-8660-01A	TNRC18	chr7	5434071	-	RNF216	chr7	5663756	-
Frame-shit	ENST00000406386	ENST00000260323		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000406386	ENST00000537900		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000406386	ENST00000545554		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
5CDS-5UTR	ENST00000406386	ENST00000539562		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
intron-3CDS	ENST00000407319	ENST00000260323		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
intron-3CDS	ENST00000407319	ENST00000537900		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
intron-3CDS	ENST00000407319	ENST00000545554		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
intron-5UTR	ENST00000407319	ENST00000539562		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000403663	ENST00000260323		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000403663	ENST00000537900		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000403663	ENST00000545554		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
5CDS-5UTR	ENST00000403663	ENST00000539562		TCGA	RV	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38164183	+	UNC13C	chr15	54914525	+
In-frame	ENST00000334379	ENST00000368357		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
In-frame	ENST00000334379	ENST00000392477		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
In-frame	ENST00000334379	ENST00000229634		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
5CDS-intron	ENST00000334379	ENST00000487635		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000368332	ENST00000368357		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000368332	ENST00000392477		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000368332	ENST00000229634		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-intron	ENST00000368332	ENST00000487635		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000450358	ENST00000368357		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000450358	ENST00000392477		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000450358	ENST00000229634		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-intron	ENST00000450358	ENST00000487635		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000489934	ENST00000368357		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000489934	ENST00000392477		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-3CDS	ENST00000489934	ENST00000229634		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
intron-intron	ENST00000489934	ENST00000487635		TCGA	RV	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126342426	+	NCOA7	chr6	126242089	+
Frame-shit	ENST00000359154	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000359154	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000359154	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000359154	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000448661	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000448661	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000448661	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000448661	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000569174	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000569174	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000569174	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000569174	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000356003	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000356003	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000356003	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
Frame-shit	ENST00000356003	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
3UTR-3CDS	ENST00000544162	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
3UTR-3CDS	ENST00000544162	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
3UTR-3CDS	ENST00000544162	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
3UTR-3CDS	ENST00000544162	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000542271	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000542271	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000542271	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000542271	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000568684	ENST00000512062		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000568684	ENST00000307892		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000568684	ENST00000515314		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
intron-3CDS	ENST00000568684	ENST00000561792		TCGA	RV	LUAD	TCGA-55-A48Y-01A	WWP2	chr16	69833198	+	CYB5B	chr16	69481053	+
5CDS-3UTR	ENST00000369563	ENST00000487931		TCGA	RV	LUAD	TCGA-MP-A4TE-01A	DCLRE1B	chr1	114448397	+	DNAJB4	chr1	78481698	+
5CDS-3UTR	ENST00000369563	ENST00000370763		TCGA	RV	LUAD	TCGA-MP-A4TE-01A	DCLRE1B	chr1	114448397	+	DNAJB4	chr1	78481698	+
3UTR-3UTR	ENST00000466480	ENST00000487931		TCGA	RV	LUAD	TCGA-MP-A4TE-01A	DCLRE1B	chr1	114448397	+	DNAJB4	chr1	78481698	+
3UTR-3UTR	ENST00000466480	ENST00000370763		TCGA	RV	LUAD	TCGA-MP-A4TE-01A	DCLRE1B	chr1	114448397	+	DNAJB4	chr1	78481698	+
5UTR-intron	ENST00000308025	ENST00000256682		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000308025	ENST00000447318		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000308025	ENST00000541959		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000308025	ENST00000541967		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000553182	ENST00000256682		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000553182	ENST00000447318		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000553182	ENST00000541959		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
5UTR-intron	ENST00000553182	ENST00000541967		TCGA	RV	LUAD	TCGA-49-4506-01A	DDX23	chr12	49245867	-	ARF3	chr12	49297691	-
Frame-shit	ENST00000426333	ENST00000253407		TCGA	RV	LUAD	TCGA-62-A46U-01A	EFTUD2	chr17	42945175	-	C1QL1	chr17	43037735	-
Frame-shit	ENST00000592576	ENST00000253407		TCGA	RV	LUAD	TCGA-62-A46U-01A	EFTUD2	chr17	42945175	-	C1QL1	chr17	43037735	-
In-frame	ENST00000591382	ENST00000253407		TCGA	RV	LUAD	TCGA-62-A46U-01A	EFTUD2	chr17	42945175	-	C1QL1	chr17	43037735	-
In-frame	ENST00000402521	ENST00000253407		TCGA	RV	LUAD	TCGA-62-A46U-01A	EFTUD2	chr17	42945175	-	C1QL1	chr17	43037735	-
intron-3CDS	ENST00000589211	ENST00000253407		TCGA	RV	LUAD	TCGA-62-A46U-01A	EFTUD2	chr17	42945175	-	C1QL1	chr17	43037735	-
intron-3CDS	ENST00000318522	ENST00000389048		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000318522	ENST00000431873		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000318522	ENST00000498037		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000402711	ENST00000389048		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000402711	ENST00000431873		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000402711	ENST00000498037		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000482660	ENST00000389048		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000431873		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000498037		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000453191	ENST00000389048		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000431873		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000498037		TCGA	RV	LUAD	TCGA-50-8460-01A	EML4	chr2	42492091	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000234590	ENST00000367545		TCGA	RV	LUAD	TCGA-50-6673-01A	ENO1	chr1	8921061	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000234590	ENST00000367526		TCGA	RV	LUAD	TCGA-50-6673-01A	ENO1	chr1	8921061	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000234590	ENST00000480333		TCGA	RV	LUAD	TCGA-50-6673-01A	ENO1	chr1	8921061	-	UTRN	chr6	144665237	+
In-frame	ENST00000394048	ENST00000324817		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
5CDS-intron	ENST00000394048	ENST00000496531		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
In-frame	ENST00000267113	ENST00000324817		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
5CDS-intron	ENST00000267113	ENST00000496531		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
In-frame	ENST00000541590	ENST00000324817		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
5CDS-intron	ENST00000541590	ENST00000496531		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
3UTR-3CDS	ENST00000550878	ENST00000324817		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
3UTR-intron	ENST00000550878	ENST00000496531		TCGA	RV	LUAD	TCGA-86-7954-01A	ESYT1	chr12	56532797	+	MED14	chrX	40514312	-
Frame-shit	ENST00000253861	ENST00000371460		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000253861	ENST00000371459		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000253861	ENST00000371461		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000253861	ENST00000306867		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000253861	ENST00000371458		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000253861	ENST00000459689		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000539845	ENST00000371460		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000539845	ENST00000371459		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000539845	ENST00000371461		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000539845	ENST00000306867		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000539845	ENST00000371458		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000539845	ENST00000459689		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000393161	ENST00000371460		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000393161	ENST00000371459		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000393161	ENST00000371461		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000393161	ENST00000306867		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000393161	ENST00000371458		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000393161	ENST00000459689		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000545148	ENST00000371460		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000545148	ENST00000371459		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000545148	ENST00000371461		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000545148	ENST00000306867		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000545148	ENST00000371458		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-intron	ENST00000545148	ENST00000459689		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000460346	ENST00000371460		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000460346	ENST00000371459		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000460346	ENST00000371461		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000460346	ENST00000306867		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000460346	ENST00000371458		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-intron	ENST00000460346	ENST00000459689		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000541309	ENST00000371460		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000541309	ENST00000371459		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000541309	ENST00000371461		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000541309	ENST00000306867		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-3CDS	ENST00000541309	ENST00000371458		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
intron-intron	ENST00000541309	ENST00000459689		TCGA	RV	LUAD	TCGA-86-8585-01A	EXOC4	chr7	133164892	+	SUPT3H	chr6	44797594	-
In-frame	ENST00000441788	ENST00000590671		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
In-frame	ENST00000441788	ENST00000246117		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
5CDS-intron	ENST00000441788	ENST00000591062		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
In-frame	ENST00000313639	ENST00000590671		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
In-frame	ENST00000313639	ENST00000246117		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
5CDS-intron	ENST00000313639	ENST00000591062		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
In-frame	ENST00000395095	ENST00000590671		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
In-frame	ENST00000395095	ENST00000246117		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
5CDS-intron	ENST00000395095	ENST00000591062		TCGA	RV	LUAD	TCGA-55-7903-01A	FZR1	chr19	3523056	+	NCLN	chr19	3201521	+
In-frame	ENST00000395925	ENST00000265395		TCGA	RV	LUAD	TCGA-50-6591-01A	GLI3	chr7	42187825	-	HIBADH	chr7	27672064	-
5UTR-3CDS	ENST00000479210	ENST00000265395		TCGA	RV	LUAD	TCGA-50-6591-01A	GLI3	chr7	42187825	-	HIBADH	chr7	27672064	-
intron-3CDS	ENST00000437480	ENST00000265395		TCGA	RV	LUAD	TCGA-50-6591-01A	GLI3	chr7	42187825	-	HIBADH	chr7	27672064	-
Frame-shit	ENST00000398645	ENST00000320580		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000398645	ENST00000529757		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000398645	ENST00000524815		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
Frame-shit	ENST00000529006	ENST00000320580		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000529006	ENST00000529757		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000529006	ENST00000524815		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-3CDS	ENST00000526258	ENST00000320580		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-intron	ENST00000526258	ENST00000529757		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-intron	ENST00000526258	ENST00000524815		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-3CDS	ENST00000308783	ENST00000320580		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-intron	ENST00000308783	ENST00000529757		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-intron	ENST00000308783	ENST00000524815		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-3CDS	ENST00000530342	ENST00000320580		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-intron	ENST00000530342	ENST00000529757		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
intron-intron	ENST00000530342	ENST00000524815		TCGA	RV	LUAD	TCGA-99-8025-01A	KDM2A	chr11	66888829	+	PACS1	chr11	65960957	+
5CDS-intron	ENST00000354981	ENST00000470422		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000354981	ENST00000246043		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000354981	ENST00000377813		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000354981	ENST00000377807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000354981	ENST00000360807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000354981	ENST00000455029		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5UTR-intron	ENST00000378003	ENST00000470422		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5UTR-intron	ENST00000378003	ENST00000246043		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5UTR-5UTR	ENST00000378003	ENST00000377813		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5UTR-5UTR	ENST00000378003	ENST00000377807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5UTR-5UTR	ENST00000378003	ENST00000360807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5UTR-intron	ENST00000378003	ENST00000455029		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000355755	ENST00000470422		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000355755	ENST00000246043		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000355755	ENST00000377813		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000355755	ENST00000377807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000355755	ENST00000360807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000355755	ENST00000455029		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000408042	ENST00000470422		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000408042	ENST00000246043		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000408042	ENST00000377813		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000408042	ENST00000377807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-5UTR	ENST00000408042	ENST00000360807		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000408042	ENST00000455029		TCGA	RV	LUAD	TCGA-44-3919-01A	KIF16B	chr20	16506737	-	RRBP1	chr20	17641173	-
5CDS-intron	ENST00000361566	ENST00000360359		TCGA	RV	LUAD	TCGA-44-7670-01A	KRT19	chr17	39679869	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000361566	ENST00000535627		TCGA	RV	LUAD	TCGA-44-7670-01A	KRT19	chr17	39679869	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000361566	ENST00000470698		TCGA	RV	LUAD	TCGA-44-7670-01A	KRT19	chr17	39679869	-	ANKS1A	chr6	34977682	+
In-frame	ENST00000336868	ENST00000302538		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
In-frame	ENST00000336868	ENST00000544583		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
5CDS-intron	ENST00000336868	ENST00000572441		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
5CDS-intron	ENST00000336868	ENST00000574437		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
5CDS-intron	ENST00000336868	ENST00000291107		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
5CDS-intron	ENST00000336868	ENST00000543210		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
5CDS-intron	ENST00000336868	ENST00000536794		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
5CDS-intron	ENST00000336868	ENST00000573895		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000577098	ENST00000302538		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000577098	ENST00000544583		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000577098	ENST00000572441		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000577098	ENST00000574437		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000577098	ENST00000291107		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000577098	ENST00000543210		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000577098	ENST00000536794		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000577098	ENST00000573895		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000575801	ENST00000302538		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000575801	ENST00000544583		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000575801	ENST00000572441		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000575801	ENST00000574437		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000575801	ENST00000291107		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000575801	ENST00000543210		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000575801	ENST00000536794		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000575801	ENST00000573895		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000538650	ENST00000302538		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000538650	ENST00000544583		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000538650	ENST00000572441		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000538650	ENST00000574437		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000538650	ENST00000291107		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000538650	ENST00000543210		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000538650	ENST00000536794		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000538650	ENST00000573895		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000537628	ENST00000302538		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-3CDS	ENST00000537628	ENST00000544583		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000537628	ENST00000572441		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000537628	ENST00000574437		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000537628	ENST00000291107		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000537628	ENST00000543210		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000537628	ENST00000536794		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
intron-intron	ENST00000537628	ENST00000573895		TCGA	RV	LUAD	TCGA-55-8506-01A	NXN	chr17	882559	-	ABR	chr17	962107	-
Frame-shit	ENST00000545128	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	PCSK5	chr9	78506289	+	OSTF1	chr9	77761599	+
Frame-shit	ENST00000376767	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	PCSK5	chr9	78506289	+	OSTF1	chr9	77761599	+
Frame-shit	ENST00000376752	ENST00000346234		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	PCSK5	chr9	78506289	+	OSTF1	chr9	77761599	+
In-frame	ENST00000275034	ENST00000471389		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
Frame-shit	ENST00000275034	ENST00000394647		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
Frame-shit	ENST00000275034	ENST00000431610		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
Frame-shit	ENST00000275034	ENST00000460382		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
Frame-shit	ENST00000275034	ENST00000463855		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
5CDS-3UTR	ENST00000275034	ENST00000472835		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000479165	ENST00000471389		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000479165	ENST00000394647		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000479165	ENST00000431610		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000479165	ENST00000460382		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
intron-3CDS	ENST00000479165	ENST00000463855		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
intron-3UTR	ENST00000479165	ENST00000472835		TCGA	RV	LUAD	TCGA-55-6712-01A	PHIP	chr6	79752560	-	FTO	chr16	54145674	+
5UTR-3CDS	ENST00000373840	ENST00000286713		TCGA	RV	LUAD	TCGA-44-7660-01A	RAB14	chr9	123963917	-	STOM	chr9	124111601	-
5UTR-3CDS	ENST00000373840	ENST00000538954		TCGA	RV	LUAD	TCGA-44-7660-01A	RAB14	chr9	123963917	-	STOM	chr9	124111601	-
5UTR-intron	ENST00000373840	ENST00000347359		TCGA	RV	LUAD	TCGA-44-7660-01A	RAB14	chr9	123963917	-	STOM	chr9	124111601	-
5UTR-3CDS	ENST00000353383	ENST00000441623		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
5UTR-3CDS	ENST00000353383	ENST00000309099		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
5UTR-intron	ENST00000353383	ENST00000320913		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
3UTR-3CDS	ENST00000489697	ENST00000441623		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
3UTR-3CDS	ENST00000489697	ENST00000309099		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
3UTR-intron	ENST00000489697	ENST00000320913		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
intron-3CDS	ENST00000261641	ENST00000441623		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
intron-3CDS	ENST00000261641	ENST00000309099		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
intron-intron	ENST00000261641	ENST00000320913		TCGA	RV	LUAD	TCGA-93-8067-01A	RAI1	chr17	17585107	+	MRGPRF	chr11	68773729	-
Frame-shit	ENST00000325954	ENST00000427718		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
Frame-shit	ENST00000325954	ENST00000330622		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
5CDS-5UTR	ENST00000325954	ENST00000549689		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
Frame-shit	ENST00000413266	ENST00000427718		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
Frame-shit	ENST00000413266	ENST00000330622		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
5CDS-5UTR	ENST00000413266	ENST00000549689		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
intron-3CDS	ENST00000542701	ENST00000427718		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
intron-3CDS	ENST00000542701	ENST00000330622		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
intron-5UTR	ENST00000542701	ENST00000549689		TCGA	RV	LUAD	TCGA-97-7937-01A	RNF10	chr12	120972771	+	FBXO21	chr12	117615446	-
In-frame	ENST00000374168	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000374168	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000374166	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000374166	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000526792	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000526792	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000374162	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000374162	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000530003	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000530003	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000531382	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
In-frame	ENST00000531382	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
intron-3CDS	ENST00000488985	ENST00000326279		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
intron-3CDS	ENST00000488985	ENST00000254231		TCGA	RV	LUAD	TCGA-55-8085-01A	RPS6KA1	chr1	26885428	+	LIN28A	chr1	26751794	+
5UTR-3CDS	ENST00000590320	ENST00000293677		TCGA	RV	LUAD	TCGA-69-7979-01A	S1PR2	chr19	10341880	-	RAVER1	chr19	10429916	-
In-frame	ENST00000252542	ENST00000360614		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
In-frame	ENST00000252542	ENST00000585374		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
In-frame	ENST00000252542	ENST00000593119		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
In-frame	ENST00000252542	ENST00000540670		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
In-frame	ENST00000252542	ENST00000590729		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
5CDS-intron	ENST00000252542	ENST00000590511		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
intron-3CDS	ENST00000591310	ENST00000360614		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
intron-3CDS	ENST00000591310	ENST00000585374		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
intron-3CDS	ENST00000591310	ENST00000593119		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
intron-3CDS	ENST00000591310	ENST00000540670		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
intron-3CDS	ENST00000591310	ENST00000590729		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
intron-intron	ENST00000591310	ENST00000590511		TCGA	RV	LUAD	TCGA-78-8660-01A	SAFB2	chr19	5598804	-	LONP1	chr19	5708414	-
Frame-shit	ENST00000228284	ENST00000261401		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
Frame-shit	ENST00000228284	ENST00000541050		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000228284	ENST00000549384		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000228284	ENST00000421578		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000228284	ENST00000420959		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000228284	ENST00000549772		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
Frame-shit	ENST00000431469	ENST00000261401		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
Frame-shit	ENST00000431469	ENST00000541050		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000431469	ENST00000549384		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000431469	ENST00000421578		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000431469	ENST00000420959		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5CDS-5UTR	ENST00000431469	ENST00000549772		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5UTR-3CDS	ENST00000552221	ENST00000261401		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5UTR-3CDS	ENST00000552221	ENST00000541050		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5UTR-5UTR	ENST00000552221	ENST00000549384		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5UTR-5UTR	ENST00000552221	ENST00000421578		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5UTR-5UTR	ENST00000552221	ENST00000420959		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
5UTR-5UTR	ENST00000552221	ENST00000549772		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
intron-3CDS	ENST00000546611	ENST00000261401		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
intron-3CDS	ENST00000546611	ENST00000541050		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
intron-5UTR	ENST00000546611	ENST00000549384		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
intron-5UTR	ENST00000546611	ENST00000421578		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
intron-5UTR	ENST00000546611	ENST00000420959		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
intron-5UTR	ENST00000546611	ENST00000549772		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	SART3	chr12	108954619	-	CORO1C	chr12	109041298	-
3UTR-5UTR	ENST00000487305	ENST00000373374		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
3UTR-5UTR	ENST00000487305	ENST00000488417		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
5CDS-5UTR	ENST00000336294	ENST00000373374		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
5CDS-5UTR	ENST00000336294	ENST00000488417		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
intron-5UTR	ENST00000456834	ENST00000373374		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
intron-5UTR	ENST00000456834	ENST00000488417		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
intron-5UTR	ENST00000373634	ENST00000373374		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
intron-5UTR	ENST00000373634	ENST00000488417		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
5CDS-5UTR	ENST00000427288	ENST00000373374		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
5CDS-5UTR	ENST00000427288	ENST00000488417		TCGA	RV	LUAD	TCGA-71-8520-01A	TMEM39B	chr1	32542919	+	C1orf94	chr1	34662826	+
Frame-shit	ENST00000203407	ENST00000254480		TCGA	RV	LUAD	TCGA-44-8117-01A	UQCRC1	chr3	48646595	-	SMARCC1	chr3	47632327	-
5CDS-5UTR	ENST00000203407	ENST00000425518		TCGA	RV	LUAD	TCGA-44-8117-01A	UQCRC1	chr3	48646595	-	SMARCC1	chr3	47632327	-
intron-3CDS	ENST00000493806	ENST00000254480		TCGA	RV	LUAD	TCGA-44-8117-01A	UQCRC1	chr3	48646595	-	SMARCC1	chr3	47632327	-
intron-5UTR	ENST00000493806	ENST00000425518		TCGA	RV	LUAD	TCGA-44-8117-01A	UQCRC1	chr3	48646595	-	SMARCC1	chr3	47632327	-
5CDS-intron	ENST00000318602	ENST00000371917		TCGA	RV	LUAD	TCGA-97-7941-01A	A2M	chr12	9220308	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000318602	ENST00000493140		TCGA	RV	LUAD	TCGA-97-7941-01A	A2M	chr12	9220308	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000542567	ENST00000371917		TCGA	RV	LUAD	TCGA-97-7941-01A	A2M	chr12	9220308	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000542567	ENST00000493140		TCGA	RV	LUAD	TCGA-97-7941-01A	A2M	chr12	9220308	-	ARFGEF2	chr20	47615777	+
5CDS-5UTR	ENST00000264033	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	CBL	chr11	119077322	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000264033	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	CBL	chr11	119077322	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000264033	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	CBL	chr11	119077322	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000264033	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	CBL	chr11	119077322	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000264033	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	CBL	chr11	119077322	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000264033	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	CBL	chr11	119077322	+	VWA5A	chr11	123988204	+
In-frame	ENST00000249806	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000249806	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000249806	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000565471	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000565471	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000565471	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5UTR-3CDS	ENST00000418702	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5UTR-3CDS	ENST00000418702	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5UTR-intron	ENST00000418702	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000566347	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000566347	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000566347	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
intron-3CDS	ENST00000538696	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
intron-3CDS	ENST00000538696	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
intron-intron	ENST00000538696	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000564752	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
In-frame	ENST00000564752	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5CDS-intron	ENST00000564752	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5UTR-3CDS	ENST00000569336	ENST00000569673		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5UTR-3CDS	ENST00000569336	ENST00000379822		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5UTR-intron	ENST00000569336	ENST00000558834		TCGA	RV	LUAD	TCGA-05-4395-01A	CLN6	chr15	68521840	-	C15orf59	chr15	74032983	-
5CDS-5UTR	ENST00000225719	ENST00000304046		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000225719	ENST00000579695		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000225719	ENST00000394169		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000225719	ENST00000584220		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000225719	ENST00000582052		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000543464	ENST00000304046		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000543464	ENST00000579695		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000543464	ENST00000394169		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000543464	ENST00000584220		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000543464	ENST00000582052		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000584051	ENST00000304046		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000584051	ENST00000579695		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000584051	ENST00000394169		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000584051	ENST00000584220		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000584051	ENST00000582052		TCGA	RV	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080478	-
Frame-shit	ENST00000524630	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000524630	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000524630	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000524630	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000524630	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000524630	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529919	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529919	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529919	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529919	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529919	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529919	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000399039	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000399039	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000399039	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000399039	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000399039	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000399039	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000360682	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000360682	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000360682	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000360682	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000360682	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000360682	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361796	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361796	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361796	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361796	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361796	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361796	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361391	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361391	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361391	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361391	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361391	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361391	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000530094	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000530094	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000530094	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000530094	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000530094	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000530094	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000428599	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000428599	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000428599	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000428599	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000428599	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000428599	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361332	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361332	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000361332	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361332	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361332	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000361332	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000527467	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000527467	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000527467	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000527467	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000527467	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000527467	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000415361	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000415361	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000415361	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000415361	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000415361	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000415361	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532245	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532245	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532245	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532245	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532245	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532245	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532463	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532463	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532463	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532463	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532463	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532463	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000528232	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000528232	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000528232	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000528232	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000528232	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000528232	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529986	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529986	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529986	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529986	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529986	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529986	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000531014	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000531014	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000531014	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000531014	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000531014	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000531014	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000358694	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000358694	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000358694	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000358694	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000358694	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000358694	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526772	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526772	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526772	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526772	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526772	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526772	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532787	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532787	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532787	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532787	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532787	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532787	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000533667	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000533667	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000533667	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000533667	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000533667	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000533667	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529873	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529873	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529873	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529873	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529873	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529873	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000525902	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000525902	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000525902	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000525902	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000525902	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000525902	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529526	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529526	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000529526	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529526	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529526	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000529526	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532649	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532649	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532649	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532649	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532649	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532649	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000426142	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000426142	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000426142	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000426142	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000426142	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000426142	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532844	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532844	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000532844	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532844	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532844	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000532844	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000528621	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000528621	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000528621	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000528621	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000528621	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000528621	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000399050	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000399050	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000399050	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000399050	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000399050	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000399050	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526357	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526357	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526357	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526357	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526357	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526357	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000530748	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000530748	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000530748	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000530748	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000530748	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000530748	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000534579	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000534579	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000534579	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000534579	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000534579	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000534579	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526938	ENST00000453981		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526938	ENST00000432829		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
Frame-shit	ENST00000526938	ENST00000469391		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526938	ENST00000382331		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526938	ENST00000382329		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
5CDS-intron	ENST00000526938	ENST00000493666		TCGA	RV	LUAD	TCGA-83-5908-01A	CTNND1	chr11	57574455	+	DOCK8	chr9	304581	+
intron-3CDS	ENST00000225792	ENST00000381125		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-3CDS	ENST00000225792	ENST00000381075		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-intron	ENST00000225792	ENST00000421751		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-intron	ENST00000225792	ENST00000381072		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
In-frame	ENST00000450599	ENST00000381125		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
In-frame	ENST00000450599	ENST00000381075		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
5CDS-intron	ENST00000450599	ENST00000421751		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
5CDS-intron	ENST00000450599	ENST00000381072		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-3CDS	ENST00000578804	ENST00000381125		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-3CDS	ENST00000578804	ENST00000381075		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-intron	ENST00000578804	ENST00000421751		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-intron	ENST00000578804	ENST00000381072		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-3CDS	ENST00000580026	ENST00000381125		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-3CDS	ENST00000580026	ENST00000381075		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-intron	ENST00000580026	ENST00000421751		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
intron-intron	ENST00000580026	ENST00000381072		TCGA	RV	LUAD	TCGA-86-A4D0-01A	DDX5	chr17	62495741	-	PFKP	chr10	3177928	+
5CDS-intron	ENST00000371269	ENST00000398158		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000371269	ENST00000398165		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000371269	ENST00000359624		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000371269	ENST00000352178		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000371269	ENST00000398168		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000371269	ENST00000544202		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000371269	ENST00000470912		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000398158		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000398165		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000359624		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000352178		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000398168		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000544202		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000537443	ENST00000470912		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000398158		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000398165		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000359624		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000352178		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000398168		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000544202		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
intron-intron	ENST00000535035	ENST00000470912		TCGA	RV	LUAD	TCGA-50-5066-02A	DHCR24	chr1	55315306	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000346169	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000346169	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000346169	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000414031	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000414031	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000414031	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000392537	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000392537	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000392537	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000382330	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000382330	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000382330	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000350481	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000350481	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000350481	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000352767	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000352767	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000352767	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000427845	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000427845	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000427845	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
3UTR-intron	ENST00000342981	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
3UTR-intron	ENST00000342981	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
3UTR-intron	ENST00000342981	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000319274	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000319274	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000319274	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000424196	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000424196	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000424196	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411531	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411531	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411531	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000441154	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000441154	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
intron-intron	ENST00000441154	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000434061	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000434061	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000434061	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000435046	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000435046	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000435046	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7158-01A	EIF4G1	chr3	184053139	+	SNW1	chr14	78189203	-
In-frame	ENST00000541502	ENST00000531863		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000541502	ENST00000532677		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000541502	ENST00000453114		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000541502	ENST00000360510		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000541502	ENST00000541961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000541502	ENST00000530165		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
5CDS-intron	ENST00000541502	ENST00000533799		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
In-frame	ENST00000409404	ENST00000531863		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000409404	ENST00000532677		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000409404	ENST00000453114		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000409404	ENST00000360510		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000409404	ENST00000541961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000409404	ENST00000530165		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
5CDS-intron	ENST00000409404	ENST00000533799		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
In-frame	ENST00000298047	ENST00000531863		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000298047	ENST00000532677		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000298047	ENST00000453114		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000298047	ENST00000360510		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000298047	ENST00000541961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000298047	ENST00000530165		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
5CDS-intron	ENST00000298047	ENST00000533799		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
In-frame	ENST00000525166	ENST00000531863		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000525166	ENST00000532677		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000525166	ENST00000453114		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000525166	ENST00000360510		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000525166	ENST00000541961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000525166	ENST00000530165		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
5CDS-intron	ENST00000525166	ENST00000533799		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533797	ENST00000531863		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533797	ENST00000532677		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533797	ENST00000453114		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533797	ENST00000360510		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533797	ENST00000541961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000533797	ENST00000530165		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-intron	ENST00000533797	ENST00000533799		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000489716	ENST00000531863		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000489716	ENST00000532677		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000489716	ENST00000453114		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000489716	ENST00000360510		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000489716	ENST00000541961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-3CDS	ENST00000489716	ENST00000530165		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
intron-intron	ENST00000489716	ENST00000533799		TCGA	RV	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92088570	+	DPP3	chr11	66276550	+
Frame-shit	ENST00000355904	ENST00000221130		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
Frame-shit	ENST00000355904	ENST00000414019		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
5CDS-intron	ENST00000355904	ENST00000546342		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
5CDS-intron	ENST00000355904	ENST00000537535		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
5CDS-intron	ENST00000355904	ENST00000541648		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
intron-3CDS	ENST00000522833	ENST00000221130		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
intron-3CDS	ENST00000522833	ENST00000414019		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
intron-intron	ENST00000522833	ENST00000546342		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
intron-intron	ENST00000522833	ENST00000537535		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
intron-intron	ENST00000522833	ENST00000541648		TCGA	RV	LUAD	TCGA-50-6592-01A	GTF2E2	chr8	30510950	-	GSR	chr8	30550572	-
Frame-shit	ENST00000216044	ENST00000216034		TCGA	RV	LUAD	TCGA-44-2659-01A	GTPBP1	chr22	39124166	+	TOMM22	chr22	39078884	+
intron-3CDS	ENST00000460605	ENST00000216034		TCGA	RV	LUAD	TCGA-44-2659-01A	GTPBP1	chr22	39124166	+	TOMM22	chr22	39078884	+
In-frame	ENST00000392584	ENST00000272427		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
5CDS-5UTR	ENST00000392584	ENST00000490919		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
5CDS-intron	ENST00000392584	ENST00000410104		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
intron-3CDS	ENST00000460481	ENST00000272427		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
intron-5UTR	ENST00000460481	ENST00000490919		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
intron-intron	ENST00000460481	ENST00000410104		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
In-frame	ENST00000264108	ENST00000272427		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
5CDS-5UTR	ENST00000264108	ENST00000490919		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
5CDS-intron	ENST00000264108	ENST00000410104		TCGA	RV	LUAD	TCGA-05-4420-01A	HAT1	chr2	172844276	+	EXOC6B	chr2	72411316	-
Frame-shit	ENST00000261597	ENST00000304621		TCGA	RV	LUAD	TCGA-86-8358-01A	NDC80	chr18	2610860	+	TTC39C	chr18	21703798	+
Frame-shit	ENST00000261597	ENST00000317571		TCGA	RV	LUAD	TCGA-86-8358-01A	NDC80	chr18	2610860	+	TTC39C	chr18	21703798	+
5CDS-intron	ENST00000261597	ENST00000578150		TCGA	RV	LUAD	TCGA-86-8358-01A	NDC80	chr18	2610860	+	TTC39C	chr18	21703798	+
5CDS-intron	ENST00000261597	ENST00000584250		TCGA	RV	LUAD	TCGA-86-8358-01A	NDC80	chr18	2610860	+	TTC39C	chr18	21703798	+
5CDS-intron	ENST00000261597	ENST00000577185		TCGA	RV	LUAD	TCGA-86-8358-01A	NDC80	chr18	2610860	+	TTC39C	chr18	21703798	+
5CDS-intron	ENST00000261597	ENST00000540918		TCGA	RV	LUAD	TCGA-86-8358-01A	NDC80	chr18	2610860	+	TTC39C	chr18	21703798	+
Frame-shit	ENST00000407008	ENST00000356175		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
Frame-shit	ENST00000407008	ENST00000358273		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-intron	ENST00000407008	ENST00000431387		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-intron	ENST00000407008	ENST00000581113		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-3UTR	ENST00000407008	ENST00000417592		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-3UTR	ENST00000407008	ENST00000444181		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
3UTR-3CDS	ENST00000583517	ENST00000356175		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
3UTR-3CDS	ENST00000583517	ENST00000358273		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
3UTR-intron	ENST00000583517	ENST00000431387		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
3UTR-intron	ENST00000583517	ENST00000581113		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
3UTR-3UTR	ENST00000583517	ENST00000417592		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
3UTR-3UTR	ENST00000583517	ENST00000444181		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
Frame-shit	ENST00000582037	ENST00000356175		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
Frame-shit	ENST00000582037	ENST00000358273		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-intron	ENST00000582037	ENST00000431387		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-intron	ENST00000582037	ENST00000581113		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-3UTR	ENST00000582037	ENST00000417592		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
5CDS-3UTR	ENST00000582037	ENST00000444181		TCGA	RV	LUAD	TCGA-69-7764-01A	NLK	chr17	26370357	+	NF1	chr17	29687505	+
Frame-shit	ENST00000406610	ENST00000566780		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000406610	ENST00000406884		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
In-frame	ENST00000406610	ENST00000539474		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000406610	ENST00000402655		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000406610	ENST00000408984		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000406610	ENST00000355860		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000406610	ENST00000565791		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000406610	ENST00000569818		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000462231	ENST00000566780		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000462231	ENST00000406884		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
In-frame	ENST00000462231	ENST00000539474		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000462231	ENST00000402655		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000462231	ENST00000408984		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000462231	ENST00000355860		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000462231	ENST00000565791		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000462231	ENST00000569818		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000349953	ENST00000566780		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000349953	ENST00000406884		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
In-frame	ENST00000349953	ENST00000539474		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000349953	ENST00000402655		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000349953	ENST00000408984		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000349953	ENST00000355860		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000349953	ENST00000565791		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000349953	ENST00000569818		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000358768	ENST00000566780		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000358768	ENST00000406884		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
In-frame	ENST00000358768	ENST00000539474		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000358768	ENST00000402655		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000358768	ENST00000408984		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000358768	ENST00000355860		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000358768	ENST00000565791		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000358768	ENST00000569818		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000351153	ENST00000566780		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000351153	ENST00000406884		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
In-frame	ENST00000351153	ENST00000539474		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000351153	ENST00000402655		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000351153	ENST00000408984		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000351153	ENST00000355860		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000351153	ENST00000565791		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000351153	ENST00000569818		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488622	ENST00000566780		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488622	ENST00000406884		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488622	ENST00000539474		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000488622	ENST00000402655		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-intron	ENST00000488622	ENST00000408984		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-intron	ENST00000488622	ENST00000355860		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-intron	ENST00000488622	ENST00000565791		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
intron-intron	ENST00000488622	ENST00000569818		TCGA	RV	LUAD	TCGA-49-6744-01A	PARD3B	chr2	205990461	+	WWOX	chr16	79245505	+
In-frame	ENST00000377604	ENST00000229329		TCGA	RV	LUAD	TCGA-86-7954-01A	RBM10	chrX	47006897	+	CMAS	chr12	22208083	+
In-frame	ENST00000329236	ENST00000229329		TCGA	RV	LUAD	TCGA-86-7954-01A	RBM10	chrX	47006897	+	CMAS	chr12	22208083	+
In-frame	ENST00000345781	ENST00000229329		TCGA	RV	LUAD	TCGA-86-7954-01A	RBM10	chrX	47006897	+	CMAS	chr12	22208083	+
intron-3CDS	ENST00000478410	ENST00000229329		TCGA	RV	LUAD	TCGA-86-7954-01A	RBM10	chrX	47006897	+	CMAS	chr12	22208083	+
5UTR-3CDS	ENST00000303657	ENST00000222139		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
5UTR-3CDS	ENST00000303657	ENST00000592375		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
intron-3CDS	ENST00000359161	ENST00000222139		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
intron-3CDS	ENST00000359161	ENST00000592375		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
5UTR-3CDS	ENST00000592546	ENST00000222139		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
5UTR-3CDS	ENST00000592546	ENST00000592375		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
intron-3CDS	ENST00000587700	ENST00000222139		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
intron-3CDS	ENST00000587700	ENST00000592375		TCGA	RV	LUAD	TCGA-50-5946-01A	RFX2	chr19	6110404	-	EPOR	chr19	11489454	-
5UTR-3CDS	ENST00000373242	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
intron-3CDS	ENST00000373238	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
5UTR-3CDS	ENST00000373241	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
intron-3CDS	ENST00000431664	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
5UTR-3CDS	ENST00000458634	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
intron-3CDS	ENST00000373236	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
intron-3CDS	ENST00000477464	ENST00000277942		TCGA	RV	LUAD	TCGA-38-4630-01A	SAR1A	chr10	71930169	-	NPFFR1	chr10	72026147	-
5CDS-5UTR	ENST00000375499	ENST00000357525		TCGA	RV	LUAD	TCGA-78-7153-01A	SDHB	chr1	17380443	-	PLN	chr6	118879988	+
5UTR-5UTR	ENST00000466613	ENST00000357525		TCGA	RV	LUAD	TCGA-78-7153-01A	SDHB	chr1	17380443	-	PLN	chr6	118879988	+
intron-intron	ENST00000464451	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000464451	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000464451	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000243253	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000243253	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000243253	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000424880	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000424880	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000424880	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000483956	ENST00000233057		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000483956	ENST00000395127		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000483956	ENST00000405334		TCGA	RV	LUAD	TCGA-97-7547-01A	SEC61A1	chr3	127790525	+	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000447404	ENST00000373996		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
Frame-shit	ENST00000447404	ENST00000313400		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
Frame-shit	ENST00000447404	ENST00000361209		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000447404	ENST00000361477		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000447404	ENST00000288520		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000447404	ENST00000341734		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000447404	ENST00000358637		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
In-frame	ENST00000348403	ENST00000373996		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
In-frame	ENST00000348403	ENST00000313400		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
In-frame	ENST00000348403	ENST00000361209		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000348403	ENST00000361477		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000348403	ENST00000288520		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000348403	ENST00000341734		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000348403	ENST00000358637		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
Frame-shit	ENST00000360998	ENST00000373996		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
Frame-shit	ENST00000360998	ENST00000313400		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
Frame-shit	ENST00000360998	ENST00000361209		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000360998	ENST00000361477		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000360998	ENST00000288520		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000360998	ENST00000341734		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000360998	ENST00000358637		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000530364	ENST00000373996		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000530364	ENST00000313400		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000530364	ENST00000361209		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000530364	ENST00000361477		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000530364	ENST00000288520		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000530364	ENST00000341734		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000530364	ENST00000358637		TCGA	RV	LUAD	TCGA-78-7536-01A	STRBP	chr9	125932181	-	ASTN2	chr9	119414072	-
5CDS-intron	ENST00000263346	ENST00000564878		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263346	ENST00000393062		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263346	ENST00000378247		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263346	ENST00000563972		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
intron-intron	ENST00000563406	ENST00000564878		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
intron-intron	ENST00000563406	ENST00000393062		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
intron-intron	ENST00000563406	ENST00000378247		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
intron-intron	ENST00000563406	ENST00000563972		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263347	ENST00000564878		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263347	ENST00000393062		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263347	ENST00000378247		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
5CDS-intron	ENST00000263347	ENST00000563972		TCGA	RV	LUAD	TCGA-55-8508-01A	TCF25	chr16	89965280	+	SPIRE2	chr16	89935975	+
In-frame	ENST00000345496	ENST00000381815		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
In-frame	ENST00000345496	ENST00000381831		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
In-frame	ENST00000345496	ENST00000381839		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5CDS-intron	ENST00000345496	ENST00000543717		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5CDS-intron	ENST00000345496	ENST00000361093		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5CDS-intron	ENST00000345496	ENST00000497313		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5UTR-3CDS	ENST00000477954	ENST00000381815		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5UTR-3CDS	ENST00000477954	ENST00000381831		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5UTR-3CDS	ENST00000477954	ENST00000381839		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5UTR-intron	ENST00000477954	ENST00000543717		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5UTR-intron	ENST00000477954	ENST00000361093		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5UTR-intron	ENST00000477954	ENST00000497313		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
Frame-shit	ENST00000330942	ENST00000381815		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
Frame-shit	ENST00000330942	ENST00000381831		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
Frame-shit	ENST00000330942	ENST00000381839		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5CDS-intron	ENST00000330942	ENST00000543717		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5CDS-intron	ENST00000330942	ENST00000361093		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
5CDS-intron	ENST00000330942	ENST00000497313		TCGA	RV	LUAD	TCGA-55-A493-01A	UBE2G2	chr21	46197214	-	GART	chr21	34897307	-
Frame-shit	ENST00000609104	ENST00000298032		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000609104	ENST00000409983		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000609104	ENST00000409049		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000609104	ENST00000376528		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000609104	ENST00000464017		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
Frame-shit	ENST00000277575	ENST00000298032		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000277575	ENST00000409983		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000277575	ENST00000409049		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000277575	ENST00000376528		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000277575	ENST00000464017		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
Frame-shit	ENST00000379237	ENST00000298032		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000379237	ENST00000409983		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000379237	ENST00000409049		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000379237	ENST00000376528		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-intron	ENST00000379237	ENST00000464017		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-3CDS	ENST00000443016	ENST00000298032		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000443016	ENST00000409983		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000443016	ENST00000409049		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000443016	ENST00000376528		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000443016	ENST00000464017		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-3CDS	ENST00000609853	ENST00000298032		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000609853	ENST00000409983		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000609853	ENST00000409049		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000609853	ENST00000376528		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
intron-intron	ENST00000609853	ENST00000464017		TCGA	RV	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297744	+
5CDS-5UTR	ENST00000392882	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-3UTR	ENST00000392882	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-3UTR	ENST00000392882	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-5UTR	ENST00000358655	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000358655	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000358655	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-5UTR	ENST00000355338	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-3UTR	ENST00000355338	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-3UTR	ENST00000355338	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-5UTR	ENST00000344102	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000344102	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000344102	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-5UTR	ENST00000557135	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-3UTR	ENST00000557135	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-3UTR	ENST00000557135	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-5UTR	ENST00000556645	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000556645	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000556645	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-5UTR	ENST00000554084	ENST00000284481		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000554084	ENST00000529305		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
intron-3UTR	ENST00000554084	ENST00000533578		TCGA	RV	LUAD	TCGA-91-7771-01A	WARS	chr14	100835424	-	C8orf12	chr8	11291429	+
5CDS-intron	ENST00000295688	ENST00000322776		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000295688	ENST00000532303		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000295688	ENST00000529927		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000295688	ENST00000415352		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000295688	ENST00000526169		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368259	ENST00000322776		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368259	ENST00000532303		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368259	ENST00000529927		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368259	ENST00000415352		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000368259	ENST00000526169		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368261	ENST00000322776		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368261	ENST00000532303		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368261	ENST00000529927		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368261	ENST00000415352		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368261	ENST00000526169		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472765	ENST00000322776		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472765	ENST00000532303		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472765	ENST00000529927		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472765	ENST00000415352		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472765	ENST00000526169		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368256	ENST00000322776		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368256	ENST00000532303		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368256	ENST00000529927		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368256	ENST00000415352		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000368256	ENST00000526169		TCGA	RV	LUAD	TCGA-71-6725-01A	CCT3	chr1	156278760	-	NDUFV1	chr11	67375697	+
5CDS-5UTR	ENST00000429927	ENST00000306621		TCGA	RV	LUAD	TCGA-55-7914-01A	CDKL2	chr4	76551005	-	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000429927	ENST00000503860		TCGA	RV	LUAD	TCGA-55-7914-01A	CDKL2	chr4	76551005	-	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000307465	ENST00000306621		TCGA	RV	LUAD	TCGA-55-7914-01A	CDKL2	chr4	76551005	-	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000307465	ENST00000503860		TCGA	RV	LUAD	TCGA-55-7914-01A	CDKL2	chr4	76551005	-	CXCL11	chr4	76957217	-
Frame-shit	ENST00000480945	ENST00000361445		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	DDI2	chr1	15944303	+	MTOR	chr1	11227574	-
5CDS-intron	ENST00000480945	ENST00000376838		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	DDI2	chr1	15944303	+	MTOR	chr1	11227574	-
5CDS-intron	ENST00000480945	ENST00000495435		TCGA	RV	LUAD	TCGA-MP-A4SW-01A	DDI2	chr1	15944303	+	MTOR	chr1	11227574	-
5CDS-intron	ENST00000322349	ENST00000548946		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000322349	ENST00000318066		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000322349	ENST00000550657		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000322349	ENST00000549833		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000322349	ENST00000552442		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000547833	ENST00000548946		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000547833	ENST00000318066		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000547833	ENST00000550657		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000547833	ENST00000549833		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000547833	ENST00000552442		TCGA	RV	LUAD	TCGA-55-A491-01A	EEA1	chr12	93285405	-	UBE2N	chr12	93805075	-
In-frame	ENST00000396373	ENST00000011684		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
In-frame	ENST00000396373	ENST00000536531		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
In-frame	ENST00000396373	ENST00000396988		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
In-frame	ENST00000396373	ENST00000449001		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
5CDS-intron	ENST00000396373	ENST00000538208		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
5CDS-intron	ENST00000396373	ENST00000304581		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-3CDS	ENST00000544715	ENST00000011684		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-3CDS	ENST00000544715	ENST00000536531		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-3CDS	ENST00000544715	ENST00000396988		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-3CDS	ENST00000544715	ENST00000449001		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-intron	ENST00000544715	ENST00000538208		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-intron	ENST00000544715	ENST00000304581		TCGA	RV	LUAD	TCGA-62-A46O-01A	ETV6	chr12	11803094	+	PLEKHG6	chr12	6424171	+
3UTR-3CDS	ENST00000482812	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-3CDS	ENST00000482812	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-intron	ENST00000482812	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-intron	ENST00000482812	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-intron	ENST00000482812	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-intron	ENST00000482812	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-intron	ENST00000482812	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
3UTR-5UTR	ENST00000482812	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-3CDS	ENST00000430044	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-3CDS	ENST00000430044	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-intron	ENST00000430044	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-intron	ENST00000430044	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-intron	ENST00000430044	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-intron	ENST00000430044	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-intron	ENST00000430044	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5UTR-5UTR	ENST00000430044	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
Frame-shit	ENST00000452146	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
Frame-shit	ENST00000452146	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-intron	ENST00000452146	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-intron	ENST00000452146	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-intron	ENST00000452146	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-intron	ENST00000452146	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-intron	ENST00000452146	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-5UTR	ENST00000452146	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000434507	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000434507	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000434507	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000434507	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000434507	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000434507	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000434507	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-5UTR	ENST00000434507	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000415421	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000415421	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000415421	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000415421	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000415421	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000415421	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000415421	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-5UTR	ENST00000415421	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000320311	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000320311	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000320311	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000320311	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000320311	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000320311	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000320311	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-5UTR	ENST00000320311	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000422997	ENST00000478654		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-3CDS	ENST00000422997	ENST00000460911		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000422997	ENST00000350995		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000422997	ENST00000320356		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000422997	ENST00000541220		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000422997	ENST00000476773		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-intron	ENST00000422997	ENST00000483967		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
intron-5UTR	ENST00000422997	ENST00000536783		TCGA	RV	LUAD	TCGA-44-2659-01A	GALNT11	chr7	151722969	+	EZH2	chr7	148529842	-
5CDS-intron	ENST00000258341	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7155-01A	LAMC1	chr1	183114727	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000258341	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7155-01A	LAMC1	chr1	183114727	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000258341	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7155-01A	LAMC1	chr1	183114727	+	UTRN	chr6	144665237	+
intron-intron	ENST00000466964	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7155-01A	LAMC1	chr1	183114727	+	UTRN	chr6	144665237	+
intron-intron	ENST00000466964	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7155-01A	LAMC1	chr1	183114727	+	UTRN	chr6	144665237	+
intron-intron	ENST00000466964	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7155-01A	LAMC1	chr1	183114727	+	UTRN	chr6	144665237	+
intron-3CDS	ENST00000322723	ENST00000376929		TCGA	RV	LUAD	TCGA-78-7542-01A	NCL	chr2	232319462	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000322723	ENST00000506690		TCGA	RV	LUAD	TCGA-78-7542-01A	NCL	chr2	232319462	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000322723	ENST00000389805		TCGA	RV	LUAD	TCGA-78-7542-01A	NCL	chr2	232319462	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000322723	ENST00000402874		TCGA	RV	LUAD	TCGA-78-7542-01A	NCL	chr2	232319462	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000322723	ENST00000510187		TCGA	RV	LUAD	TCGA-78-7542-01A	NCL	chr2	232319462	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000322723	ENST00000360718		TCGA	RV	LUAD	TCGA-78-7542-01A	NCL	chr2	232319462	-	SQSTM1	chr5	179250858	+
5CDS-5UTR	ENST00000337179	ENST00000446856		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000264758		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000398125		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000513328		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000503455		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000355842		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000398123		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000337179	ENST00000398129		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-intron	ENST00000337179	ENST00000538860		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000446856		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000264758		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000398125		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000513328		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000503455		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000355842		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000398123		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-5UTR	ENST00000415493	ENST00000398129		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-intron	ENST00000415493	ENST00000538860		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000446856		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000264758		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000398125		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000513328		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000503455		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000355842		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000398123		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000549992	ENST00000398129		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-intron	ENST00000549992	ENST00000538860		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000446856		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000264758		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000398125		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000513328		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000503455		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000355842		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000398123		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000548662	ENST00000398129		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-intron	ENST00000548662	ENST00000538860		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000446856		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000264758		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000398125		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000513328		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000503455		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000355842		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000398123		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-5UTR	ENST00000547014	ENST00000398129		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
intron-intron	ENST00000547014	ENST00000538860		TCGA	RV	LUAD	TCGA-69-7760-01A	NUDT4	chr12	93772197	+	ADD1	chr4	2877623	+
5CDS-intron	ENST00000359337	ENST00000216297		TCGA	RV	LUAD	TCGA-55-7913-01B	PLXNB2	chr22	50713408	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000359337	ENST00000555943		TCGA	RV	LUAD	TCGA-55-7913-01B	PLXNB2	chr22	50713408	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000449103	ENST00000216297		TCGA	RV	LUAD	TCGA-55-7913-01B	PLXNB2	chr22	50713408	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000449103	ENST00000555943		TCGA	RV	LUAD	TCGA-55-7913-01B	PLXNB2	chr22	50713408	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000496720	ENST00000216297		TCGA	RV	LUAD	TCGA-55-7913-01B	PLXNB2	chr22	50713408	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000496720	ENST00000555943		TCGA	RV	LUAD	TCGA-55-7913-01B	PLXNB2	chr22	50713408	-	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000344691	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000344691	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
5CDS-intron	ENST00000344691	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000325074	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000325074	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
5CDS-intron	ENST00000325074	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000437180	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000437180	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
5CDS-intron	ENST00000437180	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000300305	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000300305	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
5CDS-intron	ENST00000300305	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-3CDS	ENST00000399240	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-3CDS	ENST00000399240	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-intron	ENST00000399240	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-3CDS	ENST00000486278	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-3CDS	ENST00000486278	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-intron	ENST00000486278	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-3CDS	ENST00000494829	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-3CDS	ENST00000494829	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
intron-intron	ENST00000494829	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000358356	ENST00000262127		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
Frame-shit	ENST00000358356	ENST00000423709		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
5CDS-intron	ENST00000358356	ENST00000586887		TCGA	RV	LUAD	TCGA-O1-A52J-01A	RUNX1	chr21	36206707	-	CEP76	chr18	12686449	-
In-frame	ENST00000248929	ENST00000301923		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000248929	ENST00000402203		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000248929	ENST00000454349		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000248929	ENST00000335727		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
5CDS-3UTR	ENST00000248929	ENST00000497559		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000454798	ENST00000301923		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000454798	ENST00000402203		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000454798	ENST00000454349		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
In-frame	ENST00000454798	ENST00000335727		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
5CDS-3UTR	ENST00000454798	ENST00000497559		TCGA	RV	LUAD	TCGA-55-8506-01A	SGSM3	chr22	40804846	+	TNRC6B	chr22	40696459	+
intron-intron	ENST00000401449	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000401449	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000401449	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000401449	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000401449	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000401449	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000401449	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000401449	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-intron	ENST00000548489	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-3UTR	ENST00000548489	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-3UTR	ENST00000548489	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-3UTR	ENST00000548489	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-5UTR	ENST00000548489	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-5UTR	ENST00000548489	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-intron	ENST00000548489	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
5CDS-intron	ENST00000548489	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551557	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551557	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551557	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551557	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000551557	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000551557	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551557	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551557	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000343820	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000343820	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000343820	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000343820	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000343820	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000343820	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000343820	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000343820	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000407501	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000407501	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000407501	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000407501	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000407501	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000407501	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000407501	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000407501	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000405385	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000405385	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000405385	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000405385	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000405385	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000405385	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000405385	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000405385	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551402	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551402	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551402	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551402	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000551402	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000551402	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551402	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551402	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000577543	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000577543	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000577543	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000577543	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000577543	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000577543	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000577543	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000577543	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551541	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551541	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551541	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000551541	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000551541	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000551541	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551541	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000551541	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000345133	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000345133	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000345133	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000345133	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000345133	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000345133	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000345133	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000345133	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000330513	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000330513	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000330513	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000330513	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000330513	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000330513	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000330513	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000330513	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000400167	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000400167	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000400167	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000400167	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000400167	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000400167	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000400167	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000400167	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000472042	ENST00000563392		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000472042	ENST00000570055		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000472042	ENST00000563206		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000472042	ENST00000451014		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000472042	ENST00000568625		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000472042	ENST00000288071		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000472042	ENST00000393657		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-intron	ENST00000472042	ENST00000355992		TCGA	RV	LUAD	TCGA-44-7667-01A	TGIF1	chr18	3447795	+	DDX19B	chr16	70348805	+
intron-3CDS	ENST00000519519	ENST00000414222		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
intron-intron	ENST00000519519	ENST00000434736		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
Frame-shit	ENST00000418210	ENST00000414222		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
5CDS-intron	ENST00000418210	ENST00000434736		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
Frame-shit	ENST00000458549	ENST00000414222		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
5CDS-intron	ENST00000458549	ENST00000434736		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
intron-3CDS	ENST00000523902	ENST00000414222		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
intron-intron	ENST00000523902	ENST00000434736		TCGA	RV	LUAD	TCGA-62-A46S-01A	TMEM64	chr8	91657339	-	HHLA1	chr8	133078215	-
5CDS-5UTR	ENST00000429989	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000429989	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000429989	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000429989	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000429989	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000481124	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000481124	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000481124	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000481124	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000481124	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372164	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372164	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372164	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372164	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372164	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372158	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372158	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372158	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372158	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372158	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000341863	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000341863	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000341863	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000341863	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000341863	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372156	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372156	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372156	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372156	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
5CDS-5UTR	ENST00000372156	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
intron-5UTR	ENST00000265450	ENST00000372199		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
intron-5UTR	ENST00000265450	ENST00000372198		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
intron-5UTR	ENST00000265450	ENST00000372197		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
intron-5UTR	ENST00000265450	ENST00000444807		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
intron-5UTR	ENST00000265450	ENST00000256039		TCGA	RV	LUAD	TCGA-55-1594-01A	TSPAN14	chr10	82249070	+	DYDC2	chr10	82122191	+
intron-3CDS	ENST00000396604	ENST00000528080		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
intron-3CDS	ENST00000396604	ENST00000527813		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
intron-intron	ENST00000396604	ENST00000533723		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000396602	ENST00000528080		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000396602	ENST00000527813		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-intron	ENST00000396602	ENST00000533723		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000530463	ENST00000528080		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000530463	ENST00000527813		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-intron	ENST00000530463	ENST00000533723		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000396597	ENST00000528080		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000396597	ENST00000527813		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-intron	ENST00000396597	ENST00000533723		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000299606	ENST00000528080		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-3CDS	ENST00000299606	ENST00000527813		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
5UTR-intron	ENST00000299606	ENST00000533723		TCGA	RV	LUAD	TCGA-93-8067-01A	ZNF143	chr11	9482623	+	TMEM41B	chr11	9309353	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6146-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000342704	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
Frame-shit	ENST00000342704	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
5CDS-intron	ENST00000342704	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
5UTR-3CDS	ENST00000375279	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
5UTR-3CDS	ENST00000375279	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
5UTR-intron	ENST00000375279	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000344201	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000344201	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000344201	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000397798	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000397798	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000397798	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000346541	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000346541	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000346541	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000397800	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000397800	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000397800	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000492345	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000492345	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000492345	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000359606	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000359606	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000359606	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000491618	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000491618	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000491618	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000543126	ENST00000262593		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-3CDS	ENST00000543126	ENST00000395939		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
intron-intron	ENST00000543126	ENST00000491469		TCGA	RV	LUAD	TCGA-MP-A4SV-01A	CBFA2T2	chr20	32078107	+	DOK5	chr20	53259997	+
Frame-shit	ENST00000393043	ENST00000368508		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
Frame-shit	ENST00000393043	ENST00000368507		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
In-frame	ENST00000269122	ENST00000368508		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
In-frame	ENST00000269122	ENST00000368507		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
In-frame	ENST00000579456	ENST00000368508		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
In-frame	ENST00000579456	ENST00000368507		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
intron-3CDS	ENST00000579815	ENST00000368508		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
intron-3CDS	ENST00000579815	ENST00000368507		TCGA	RV	LUAD	TCGA-44-2665-01A	CLTC	chr17	57768072	+	ROS1	chr6	117642557	-
5CDS-intron	ENST00000526148	ENST00000371754		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000526148	ENST00000469991		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000526148	ENST00000371752		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000526148	ENST00000396105		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000525681	ENST00000371754		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000525681	ENST00000469991		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000525681	ENST00000371752		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000525681	ENST00000396105		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000339995	ENST00000371754		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000339995	ENST00000469991		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000339995	ENST00000371752		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000339995	ENST00000396105		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000396525	ENST00000371754		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000396525	ENST00000469991		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000396525	ENST00000371752		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000396525	ENST00000396105		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000525995	ENST00000371754		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000525995	ENST00000469991		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000525995	ENST00000371752		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000525995	ENST00000396105		TCGA	RV	LUAD	TCGA-75-6214-01A	EIF4G2	chr11	10818601	-	ZNFX1	chr20	47863418	-
5CDS-5UTR	ENST00000253861	ENST00000373857		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000253861	ENST00000539896		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000253861	ENST00000305392		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000539845	ENST00000373857		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000539845	ENST00000539896		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000539845	ENST00000305392		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
intron-5UTR	ENST00000393161	ENST00000373857		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
intron-5UTR	ENST00000393161	ENST00000539896		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
intron-5UTR	ENST00000393161	ENST00000305392		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000545148	ENST00000373857		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000545148	ENST00000539896		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5CDS-5UTR	ENST00000545148	ENST00000305392		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
3UTR-5UTR	ENST00000460346	ENST00000373857		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
3UTR-5UTR	ENST00000460346	ENST00000539896		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
3UTR-5UTR	ENST00000460346	ENST00000305392		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
intron-5UTR	ENST00000541309	ENST00000373857		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
intron-5UTR	ENST00000541309	ENST00000539896		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
intron-5UTR	ENST00000541309	ENST00000305392		TCGA	RV	LUAD	TCGA-05-4398-01A	EXOC4	chr7	133314894	+	PTAFR	chr1	28477570	-
5UTR-3CDS	ENST00000064778	ENST00000310653		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000064778	ENST00000336083		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000064778	ENST00000536566		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000064778	ENST00000541588		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000450446	ENST00000310653		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000450446	ENST00000336083		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000450446	ENST00000536566		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000450446	ENST00000541588		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000356467	ENST00000310653		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000356467	ENST00000336083		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000356467	ENST00000536566		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000356467	ENST00000541588		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73390765	-
3UTR-5UTR	ENST00000469172	ENST00000308448		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
3UTR-5UTR	ENST00000469172	ENST00000328142		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
3UTR-intron	ENST00000469172	ENST00000400215		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
3UTR-5UTR	ENST00000469172	ENST00000541004		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
3UTR-5UTR	ENST00000469172	ENST00000495903		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000265866	ENST00000308448		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000265866	ENST00000328142		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000265866	ENST00000400215		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000265866	ENST00000541004		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000265866	ENST00000495903		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441000	ENST00000308448		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441000	ENST00000328142		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000441000	ENST00000400215		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441000	ENST00000541004		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441000	ENST00000495903		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000354695	ENST00000308448		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000354695	ENST00000328142		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000354695	ENST00000400215		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000354695	ENST00000541004		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000354695	ENST00000495903		TCGA	RV	LUAD	TCGA-95-7562-01A	HNRNPH3	chr10	70091973	+	ATAD1	chr10	89574369	-
In-frame	ENST00000294304	ENST00000281187		TCGA	RV	LUAD	TCGA-73-4658-01A	LRP5	chr11	68181480	+	VPS26B	chr11	134114832	+
In-frame	ENST00000294304	ENST00000525095		TCGA	RV	LUAD	TCGA-73-4658-01A	LRP5	chr11	68181480	+	VPS26B	chr11	134114832	+
5CDS-intron	ENST00000294304	ENST00000530402		TCGA	RV	LUAD	TCGA-73-4658-01A	LRP5	chr11	68181480	+	VPS26B	chr11	134114832	+
intron-3CDS	ENST00000529481	ENST00000281187		TCGA	RV	LUAD	TCGA-73-4658-01A	LRP5	chr11	68181480	+	VPS26B	chr11	134114832	+
intron-3CDS	ENST00000529481	ENST00000525095		TCGA	RV	LUAD	TCGA-73-4658-01A	LRP5	chr11	68181480	+	VPS26B	chr11	134114832	+
intron-intron	ENST00000529481	ENST00000530402		TCGA	RV	LUAD	TCGA-73-4658-01A	LRP5	chr11	68181480	+	VPS26B	chr11	134114832	+
In-frame	ENST00000590671	ENST00000588304		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000590671	ENST00000588485		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000590671	ENST00000591403		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000590671	ENST00000586696		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000590671	ENST00000252669		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
5CDS-3UTR	ENST00000590671	ENST00000591741		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000246117	ENST00000588304		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000246117	ENST00000588485		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000246117	ENST00000591403		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000246117	ENST00000586696		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000246117	ENST00000252669		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
5CDS-3UTR	ENST00000246117	ENST00000591741		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
intron-3CDS	ENST00000591062	ENST00000588304		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
intron-3CDS	ENST00000591062	ENST00000588485		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
intron-3CDS	ENST00000591062	ENST00000591403		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
intron-3CDS	ENST00000591062	ENST00000586696		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
intron-3CDS	ENST00000591062	ENST00000252669		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
intron-3UTR	ENST00000591062	ENST00000591741		TCGA	RV	LUAD	TCGA-75-5125-01A	NCLN	chr19	3193426	+	ACSBG2	chr19	6187294	+
In-frame	ENST00000356175	ENST00000261712		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
In-frame	ENST00000356175	ENST00000457654		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
In-frame	ENST00000358273	ENST00000261712		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
In-frame	ENST00000358273	ENST00000457654		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
In-frame	ENST00000431387	ENST00000261712		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
In-frame	ENST00000431387	ENST00000457654		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
intron-3CDS	ENST00000581113	ENST00000261712		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
intron-3CDS	ENST00000581113	ENST00000457654		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
intron-3CDS	ENST00000417592	ENST00000261712		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
intron-3CDS	ENST00000417592	ENST00000457654		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
intron-3CDS	ENST00000444181	ENST00000261712		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
intron-3CDS	ENST00000444181	ENST00000457654		TCGA	RV	LUAD	TCGA-44-5644-01A	NF1	chr17	29497015	+	PSMD11	chr17	30773963	+
In-frame	ENST00000356341	ENST00000465271		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
In-frame	ENST00000356341	ENST00000366858		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
In-frame	ENST00000356341	ENST00000366857		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000356341	ENST00000468318		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000356341	ENST00000366856		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
Frame-shit	ENST00000530617	ENST00000465271		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
Frame-shit	ENST00000530617	ENST00000366858		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
Frame-shit	ENST00000530617	ENST00000366857		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000530617	ENST00000468318		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000530617	ENST00000366856		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
In-frame	ENST00000278568	ENST00000465271		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
In-frame	ENST00000278568	ENST00000366858		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
In-frame	ENST00000278568	ENST00000366857		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000278568	ENST00000468318		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000278568	ENST00000366856		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000528203	ENST00000465271		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000528203	ENST00000366858		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000528203	ENST00000366857		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000528203	ENST00000468318		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000528203	ENST00000366856		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000525542	ENST00000465271		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000525542	ENST00000366858		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000525542	ENST00000366857		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000525542	ENST00000468318		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000525542	ENST00000366856		TCGA	RV	LUAD	TCGA-78-7161-01A	PAK1	chr11	77103376	-	CNIH4	chr1	224553581	+
5CDS-intron	ENST00000394936	ENST00000404460		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000303908		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000409158		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000403716		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000234115		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000439822		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000487980		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000438882		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000538982		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000409612		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394936	ENST00000409279		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000404460		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000303908		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000409158		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000403716		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000234115		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000439822		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000487980		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000438882		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000538982		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000409612		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000394934	ENST00000409279		TCGA	RV	LUAD	TCGA-86-8358-01A	PSAP	chr10	73576056	-	PLEKHB2	chr2	131876464	+
Frame-shit	ENST00000357387	ENST00000344537		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000357387	ENST00000355917		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000357387	ENST00000338950		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000357387	ENST00000462989		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
Frame-shit	ENST00000296782	ENST00000344537		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000296782	ENST00000355917		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000296782	ENST00000338950		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000296782	ENST00000462989		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
intron-3CDS	ENST00000503698	ENST00000344537		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
intron-intron	ENST00000503698	ENST00000355917		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
intron-intron	ENST00000503698	ENST00000338950		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
intron-intron	ENST00000503698	ENST00000462989		TCGA	RV	LUAD	TCGA-55-8507-01A	RICTOR	chr5	39074213	-	DTNBP1	chr6	15593312	-
In-frame	ENST00000319104	ENST00000220772		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
Frame-shit	ENST00000319104	ENST00000379845		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
5UTR-3CDS	ENST00000319073	ENST00000220772		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
5UTR-3CDS	ENST00000319073	ENST00000379845		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
Frame-shit	ENST00000534961	ENST00000220772		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
In-frame	ENST00000534961	ENST00000379845		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
In-frame	ENST00000527424	ENST00000220772		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
Frame-shit	ENST00000527424	ENST00000379845		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
intron-3CDS	ENST00000526349	ENST00000220772		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
intron-3CDS	ENST00000526349	ENST00000379845		TCGA	RV	LUAD	TCGA-50-6673-01A	RNF170	chr8	42742871	-	SFRP1	chr8	41123008	-
5CDS-5UTR	ENST00000307877	ENST00000487990		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000399272		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000489903		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000313806		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000443408		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000482533		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000481448		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000381132		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000381135		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000307877	ENST00000492600		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000487990		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000399272		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000489903		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000313806		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000443408		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000482533		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000481448		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000381132		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000381135		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000539137	ENST00000492600		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000487990		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000399272		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000489903		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000313806		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000443408		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000482533		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000481448		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000381132		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000381135		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
5CDS-5UTR	ENST00000355113	ENST00000492600		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000487990		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000399272		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000489903		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000313806		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000443408		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000482533		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000481448		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000381132		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000381135		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000602720	ENST00000492600		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000487990		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000399272		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000489903		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000313806		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000443408		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000482533		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000481448		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000381132		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000381135		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
intron-5UTR	ENST00000542536	ENST00000492600		TCGA	RV	LUAD	TCGA-50-5944-01A	SRP68	chr17	74060057	-	RCAN1	chr21	35896008	-
3UTR-intron	ENST00000319006	ENST00000371754		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000319006	ENST00000469991		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000319006	ENST00000371752		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000319006	ENST00000396105		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000528097	ENST00000371754		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000528097	ENST00000469991		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000528097	ENST00000371752		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000528097	ENST00000396105		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000532202	ENST00000371754		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000532202	ENST00000469991		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000532202	ENST00000371752		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000532202	ENST00000396105		TCGA	RV	LUAD	TCGA-44-7671-01A	TALDO1	chr11	765012	+	ZNFX1	chr20	47863418	-
Frame-shit	ENST00000399537	ENST00000260129		TCGA	RV	LUAD	TCGA-MP-A4T9-01A	TNRC18	chr7	5410006	-	TGS1	chr8	56723440	+
Frame-shit	ENST00000430969	ENST00000260129		TCGA	RV	LUAD	TCGA-MP-A4T9-01A	TNRC18	chr7	5410006	-	TGS1	chr8	56723440	+
intron-3CDS	ENST00000399434	ENST00000260129		TCGA	RV	LUAD	TCGA-MP-A4T9-01A	TNRC18	chr7	5410006	-	TGS1	chr8	56723440	+
intron-intron	ENST00000216037	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000216037	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000216037	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000403532	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000403532	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000403532	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000405219	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000405219	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000405219	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000344347	ENST00000367545		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000344347	ENST00000367526		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
intron-intron	ENST00000344347	ENST00000480333		TCGA	RV	LUAD	TCGA-86-6851-01A	XBP1	chr22	29190549	-	UTRN	chr6	144665237	+
In-frame	ENST00000526343	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000526343	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000526343	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000282441	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000282441	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000282441	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000537274	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000537274	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000537274	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000345877	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000345877	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000345877	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000531439	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000531439	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000531439	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000524575	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000524575	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000524575	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
intron-3CDS	ENST00000528834	ENST00000434758		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
intron-3CDS	ENST00000528834	ENST00000526781		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
intron-3CDS	ENST00000528834	ENST00000534360		TCGA	RV	LUAD	TCGA-69-7979-01A	YAP1	chr11	101985125	+	C11orf70	chr11	101918546	+
In-frame	ENST00000532828	ENST00000360761		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000354983		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000352832		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000442258		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000416767		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000502264		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000515411		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000510115		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000503485		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000515165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000507510		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000514181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000515765		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000507336		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000514079		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000507896		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000512389		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000513689		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000513964		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000505165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000507609		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000514717		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000510366		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000429973		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000359106		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000532828	ENST00000358244		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000360761		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000354983		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000352832		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000442258		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000416767		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000502264		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000515411		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000510115		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000503485		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000515165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000507510		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000514181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000515765		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000507336		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000514079		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000507896		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000512389		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000513689		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000513964		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000505165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000507609		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000514717		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000510366		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000429973		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000359106		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000531805	ENST00000358244		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000360761		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000354983		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000352832		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000442258		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000416767		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000502264		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000515411		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000510115		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000503485		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000515165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000507510		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000514181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000515765		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000507336		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000514079		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000507896		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000512389		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000513689		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000513964		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000505165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000507609		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000514717		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000510366		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000429973		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000359106		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000312908	ENST00000358244		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000360761		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000354983		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000352832		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000442258		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000416767		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000502264		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000515411		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000510115		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000503485		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000515165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000507510		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000514181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000515765		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000507336		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000514079		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000507896		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000512389		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000513689		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000513964		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000505165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000507609		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000514717		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000510366		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000429973		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000359106		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000527838	ENST00000358244		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000360761		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000354983		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000352832		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000442258		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000416767		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000502264		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000515411		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000510115		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000503485		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000515165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000507510		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000514181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000515765		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000507336		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000514079		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000507896		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000512389		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000513689		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000513964		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000505165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000507609		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000514717		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000510366		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000429973		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000359106		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000586320	ENST00000358244		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000360761		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000354983		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000352832		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000442258		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000416767		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000502264		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000515411		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000510115		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000503485		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000515165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000507510		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000514181		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000515765		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000507336		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000514079		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000507896		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000512389		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000513689		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000513964		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000505165		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000507609		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000514717		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000510366		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000429973		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000359106		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000534363	ENST00000358244		TCGA	RV	LUAD	TCGA-69-A59K-01A	ZNF585B	chr19	37697942	-	CACNA1G	chr17	48652904	+
In-frame	ENST00000432648	ENST00000373075		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
In-frame	ENST00000432648	ENST00000296214		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
In-frame	ENST00000432648	ENST00000373074		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-5UTR	ENST00000432648	ENST00000475828		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-5UTR	ENST00000432648	ENST00000373073		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-5UTR	ENST00000432648	ENST00000448519		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
In-frame	ENST00000446189	ENST00000373075		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
In-frame	ENST00000446189	ENST00000296214		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
In-frame	ENST00000446189	ENST00000373074		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-5UTR	ENST00000446189	ENST00000475828		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-5UTR	ENST00000446189	ENST00000373073		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-5UTR	ENST00000446189	ENST00000448519		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
intron-3CDS	ENST00000372984	ENST00000373075		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
intron-3CDS	ENST00000372984	ENST00000296214		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
intron-3CDS	ENST00000372984	ENST00000373074		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
intron-5UTR	ENST00000372984	ENST00000475828		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
intron-5UTR	ENST00000372984	ENST00000373073		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
intron-5UTR	ENST00000372984	ENST00000448519		TCGA	RV	LUAD	TCGA-55-6712-01A	AKIRIN1	chr1	39463983	+	MEAF6	chr1	37967597	-
5CDS-intron	ENST00000276569	ENST00000361111		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
5CDS-intron	ENST00000276569	ENST00000359758		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
5CDS-intron	ENST00000276569	ENST00000297498		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
5CDS-intron	ENST00000276569	ENST00000458665		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
5CDS-intron	ENST00000276569	ENST00000528168		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
5CDS-intron	ENST00000276569	ENST00000398462		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
5CDS-intron	ENST00000276569	ENST00000317900		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000361111		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000359758		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000297498		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000458665		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000528168		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000398462		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000458464	ENST00000317900		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000361111		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000359758		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000297498		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000458665		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000528168		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000398462		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
intron-intron	ENST00000523384	ENST00000317900		TCGA	RV	LUAD	TCGA-91-7771-01A	ARMC1	chr8	66525479	-	SPAG11B	chr8	7308721	-
Frame-shit	ENST00000287394	ENST00000424843		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
Frame-shit	ENST00000287394	ENST00000276654		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
5CDS-intron	ENST00000287394	ENST00000518375		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-3CDS	ENST00000521903	ENST00000424843		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-3CDS	ENST00000521903	ENST00000276654		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-intron	ENST00000521903	ENST00000518375		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-3CDS	ENST00000534257	ENST00000424843		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-3CDS	ENST00000534257	ENST00000276654		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-intron	ENST00000534257	ENST00000518375		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	ATAD2	chr8	124408427	-	LRP12	chr8	105521302	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3917-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000269141	ENST00000313654		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
Frame-shit	ENST00000269141	ENST00000399516		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
5CDS-intron	ENST00000269141	ENST00000269217		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
5CDS-intron	ENST00000269141	ENST00000587184		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
5CDS-intron	ENST00000269141	ENST00000588770		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
intron-3CDS	ENST00000399380	ENST00000313654		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
intron-3CDS	ENST00000399380	ENST00000399516		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
intron-intron	ENST00000399380	ENST00000269217		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
intron-intron	ENST00000399380	ENST00000587184		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
intron-intron	ENST00000399380	ENST00000588770		TCGA	RV	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21394367	+
Frame-shit	ENST00000369449	ENST00000318006		TCGA	RV	LUAD	TCGA-67-3771-01A	CLIC2	chrX	154563680	-	VPS39	chr15	42470536	-
Frame-shit	ENST00000369449	ENST00000348544		TCGA	RV	LUAD	TCGA-67-3771-01A	CLIC2	chrX	154563680	-	VPS39	chr15	42470536	-
5CDS-intron	ENST00000369449	ENST00000568357		TCGA	RV	LUAD	TCGA-67-3771-01A	CLIC2	chrX	154563680	-	VPS39	chr15	42470536	-
5UTR-3CDS	ENST00000465553	ENST00000318006		TCGA	RV	LUAD	TCGA-67-3771-01A	CLIC2	chrX	154563680	-	VPS39	chr15	42470536	-
5UTR-3CDS	ENST00000465553	ENST00000348544		TCGA	RV	LUAD	TCGA-67-3771-01A	CLIC2	chrX	154563680	-	VPS39	chr15	42470536	-
5UTR-intron	ENST00000465553	ENST00000568357		TCGA	RV	LUAD	TCGA-67-3771-01A	CLIC2	chrX	154563680	-	VPS39	chr15	42470536	-
5CDS-5UTR	ENST00000265136	ENST00000394389		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000265136	ENST00000394386		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000265136	ENST00000487847		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000395542	ENST00000394389		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000395542	ENST00000394386		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000395542	ENST00000487847		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000395540	ENST00000394389		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000395540	ENST00000394386		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000395540	ENST00000487847		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000441453	ENST00000394389		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000441453	ENST00000394386		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
5CDS-5UTR	ENST00000441453	ENST00000487847		TCGA	RV	LUAD	TCGA-50-6673-01A	COBL	chr7	51152863	-	DUSP14	chr17	35870779	+
intron-3CDS	ENST00000524630	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-3CDS	ENST00000524630	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-intron	ENST00000524630	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-3CDS	ENST00000529919	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-3CDS	ENST00000529919	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-intron	ENST00000529919	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-3CDS	ENST00000399039	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-3CDS	ENST00000399039	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
intron-intron	ENST00000399039	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000360682	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000360682	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000360682	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000361796	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000361796	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000361796	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000361391	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000361391	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000361391	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000530094	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000530094	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000530094	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000428599	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000428599	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000428599	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000361332	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000361332	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000361332	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000527467	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000527467	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000527467	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000415361	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000415361	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000415361	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532245	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532245	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000532245	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532463	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532463	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000532463	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000528232	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000528232	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000528232	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000529986	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000529986	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000529986	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000531014	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000531014	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000531014	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000358694	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000358694	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000358694	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000526772	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000526772	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000526772	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532787	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532787	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000532787	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000533667	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000533667	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000533667	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000529873	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000529873	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000529873	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000525902	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000525902	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000525902	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000529526	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000529526	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000529526	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532649	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532649	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000532649	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000426142	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000426142	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000426142	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532844	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000532844	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000532844	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000528621	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000528621	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000528621	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000399050	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000399050	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000399050	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000526357	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000526357	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000526357	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000530748	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000530748	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000530748	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000534579	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000534579	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000534579	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000526938	ENST00000527985		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-3CDS	ENST00000526938	ENST00000287169		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5UTR-intron	ENST00000526938	ENST00000527090		TCGA	RV	LUAD	TCGA-78-8640-01A	CTNND1	chr11	57529518	+	ZDHHC5	chr11	57466031	+
5CDS-5UTR	ENST00000264057	ENST00000409110		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
5CDS-intron	ENST00000264057	ENST00000461532		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
5CDS-intron	ENST00000264057	ENST00000449594		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
5CDS-5UTR	ENST00000409813	ENST00000409110		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
5CDS-intron	ENST00000409813	ENST00000461532		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
5CDS-intron	ENST00000409813	ENST00000449594		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
intron-5UTR	ENST00000489613	ENST00000409110		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
intron-intron	ENST00000489613	ENST00000461532		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
intron-intron	ENST00000489613	ENST00000449594		TCGA	RV	LUAD	TCGA-91-8499-01A	DGKD	chr2	234299129	+	SAG	chr2	234217808	+
Frame-shit	ENST00000345617	ENST00000343017		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
5CDS-intron	ENST00000345617	ENST00000326277		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
5CDS-intron	ENST00000345617	ENST00000381410		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-3CDS	ENST00000543185	ENST00000343017		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-intron	ENST00000543185	ENST00000326277		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-intron	ENST00000543185	ENST00000381410		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-3CDS	ENST00000541256	ENST00000343017		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-intron	ENST00000541256	ENST00000326277		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-intron	ENST00000541256	ENST00000381410		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-3CDS	ENST00000553145	ENST00000343017		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-intron	ENST00000553145	ENST00000326277		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
intron-intron	ENST00000553145	ENST00000381410		TCGA	RV	LUAD	TCGA-78-7536-01A	HDAC4	chr2	240158289	-	SNX18	chr5	53839009	+
Frame-shit	ENST00000377809	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000377809	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000377809	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000402010	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000402010	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000402010	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000413835	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000413835	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000413835	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5UTR-3CDS	ENST00000377810	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5UTR-intron	ENST00000377810	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5UTR-intron	ENST00000377810	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000315032	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000315032	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000315032	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000508192	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000508192	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000508192	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000361128	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000361128	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000361128	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000350490	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000350490	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000350490	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
Frame-shit	ENST00000502399	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000502399	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
5CDS-intron	ENST00000502399	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-3CDS	ENST00000509502	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000509502	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000509502	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-3CDS	ENST00000513765	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000513765	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000513765	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-3CDS	ENST00000408948	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000408948	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000408948	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-3CDS	ENST00000425897	ENST00000280346		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000425897	ENST00000393051		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
intron-intron	ENST00000425897	ENST00000537636		TCGA	RV	LUAD	TCGA-67-3774-01A	MARK2	chr11	63607032	+	DLAT	chr11	111907997	+
In-frame	ENST00000281928	ENST00000390654		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	MED13L	chr12	116714865	-	COL23A1	chr5	177690325	-
In-frame	ENST00000281928	ENST00000407622		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	MED13L	chr12	116714865	-	COL23A1	chr5	177690325	-
5CDS-intron	ENST00000281928	ENST00000484750		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	MED13L	chr12	116714865	-	COL23A1	chr5	177690325	-
5UTR-3CDS	ENST00000551197	ENST00000390654		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	MED13L	chr12	116714865	-	COL23A1	chr5	177690325	-
5UTR-3CDS	ENST00000551197	ENST00000407622		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	MED13L	chr12	116714865	-	COL23A1	chr5	177690325	-
5UTR-intron	ENST00000551197	ENST00000484750		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	MED13L	chr12	116714865	-	COL23A1	chr5	177690325	-
5UTR-3CDS	ENST00000274813	ENST00000371460		TCGA	RV	LUAD	TCGA-05-4420-01A	MUT	chr6	49430816	-	SUPT3H	chr6	44988369	-
5UTR-3CDS	ENST00000274813	ENST00000371459		TCGA	RV	LUAD	TCGA-05-4420-01A	MUT	chr6	49430816	-	SUPT3H	chr6	44988369	-
5UTR-3CDS	ENST00000274813	ENST00000371461		TCGA	RV	LUAD	TCGA-05-4420-01A	MUT	chr6	49430816	-	SUPT3H	chr6	44988369	-
5UTR-3CDS	ENST00000274813	ENST00000306867		TCGA	RV	LUAD	TCGA-05-4420-01A	MUT	chr6	49430816	-	SUPT3H	chr6	44988369	-
5UTR-intron	ENST00000274813	ENST00000371458		TCGA	RV	LUAD	TCGA-05-4420-01A	MUT	chr6	49430816	-	SUPT3H	chr6	44988369	-
5UTR-intron	ENST00000274813	ENST00000459689		TCGA	RV	LUAD	TCGA-05-4420-01A	MUT	chr6	49430816	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000496817	ENST00000326195		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000496817	ENST00000376545		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000496817	ENST00000396515		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000457111		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000452530		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000416932		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000470464		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000419893		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000448939		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000457970		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000475528		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000457078		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000412443		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000546690		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000421608		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000486105		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000383588		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000383587		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000400609		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000485585		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000426219		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000421042		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000552867		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000454094		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000494413		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000423247		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000420257		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000456791		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000496817	ENST00000495194		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000368719	ENST00000326195		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000368719	ENST00000376545		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000368719	ENST00000396515		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000457111		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000452530		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000416932		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000470464		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000419893		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000448939		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000457970		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000475528		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000457078		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000412443		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000546690		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000421608		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000486105		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000383588		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000383587		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000400609		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000485585		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000426219		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000421042		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000552867		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000454094		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000494413		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000423247		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000420257		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000456791		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368719	ENST00000495194		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000368720	ENST00000326195		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000368720	ENST00000376545		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000368720	ENST00000396515		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000457111		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000452530		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000416932		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000470464		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000419893		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000448939		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000457970		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000475528		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000457078		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000412443		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000546690		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000421608		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000486105		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000383588		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000383587		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000400609		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000485585		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000426219		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000421042		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000552867		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000454094		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000494413		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000423247		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000420257		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000456791		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000368720	ENST00000495194		TCGA	RV	LUAD	TCGA-44-7670-01A	S100A6	chr1	153507075	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000442011	ENST00000587758		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000588426		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000356783		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000291901		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000536926		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000588981		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000587465		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000585321		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000442011	ENST00000592920		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000587758		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000588426		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000356783		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000291901		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000536926		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000588981		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000587465		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000585321		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000305126	ENST00000592920		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000587758		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000588426		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000356783		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000291901		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000536926		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000588981		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000587465		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000585321		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000508076	ENST00000592920		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000587758		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000588426		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000356783		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000291901		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000536926		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000588981		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000587465		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000585321		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
intron-intron	ENST00000504185	ENST00000592920		TCGA	RV	LUAD	TCGA-69-7978-01A	TGFBI	chr5	135399504	+	TNNT1	chr19	55646910	-
Frame-shit	ENST00000367334	ENST00000285039		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000367334	ENST00000324581		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367334	ENST00000592688		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367334	ENST00000587895		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000367333	ENST00000285039		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000367333	ENST00000324581		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367333	ENST00000592688		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367333	ENST00000587895		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5UTR-3CDS	ENST00000472411	ENST00000285039		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5UTR-3CDS	ENST00000472411	ENST00000324581		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5UTR-intron	ENST00000472411	ENST00000592688		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5UTR-intron	ENST00000472411	ENST00000587895		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
In-frame	ENST00000367330	ENST00000285039		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
In-frame	ENST00000367330	ENST00000324581		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367330	ENST00000592688		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367330	ENST00000587895		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000367332	ENST00000285039		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000367332	ENST00000324581		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367332	ENST00000592688		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000367332	ENST00000587895		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000485839	ENST00000285039		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
Frame-shit	ENST00000485839	ENST00000324581		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000485839	ENST00000592688		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000485839	ENST00000587895		TCGA	RV	LUAD	TCGA-91-6848-01A	TMEM9	chr1	201112948	-	MYO5B	chr18	47421544	-
5CDS-intron	ENST00000263801	ENST00000522695		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000524300		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000523558		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000521210		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000355780		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000519961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000521727		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000521451		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000522509		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000517542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000524104		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000522962		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000263801	ENST00000521419		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000522695		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000524300		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000523558		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000521210		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000355780		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000519961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000521727		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000521451		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000522509		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000517542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000524104		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000522962		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382039	ENST00000521419		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000522695		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000524300		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000523558		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000521210		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000355780		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000519961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000521727		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000521451		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000522509		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000517542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000524104		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000522962		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000382044	ENST00000521419		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000522695		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000524300		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000523558		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000521210		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000355780		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000519961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000521727		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000521451		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000522509		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000517542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000524104		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000522962		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
5CDS-intron	ENST00000450115	ENST00000521419		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000522695		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000524300		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000523558		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000521210		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000355780		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000519961		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000521727		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000521451		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000522509		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000517542		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000524104		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000522962		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
intron-intron	ENST00000605155	ENST00000521419		TCGA	RV	LUAD	TCGA-97-A4M3-01A	TP53BP1	chr15	43720214	-	STAU2	chr8	74440039	-
In-frame	ENST00000397397	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397397	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397397	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397397	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000397397	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397411	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397411	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397411	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397411	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000397411	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397396	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397396	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397396	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397396	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000397396	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397408	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397408	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397408	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397408	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000397408	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397406	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397406	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397406	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397406	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000397406	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409543	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409543	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409543	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409543	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000409543	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525201	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525201	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525201	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525201	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000525201	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397404	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397404	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397404	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000397404	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000397404	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000346501	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000346501	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000346501	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000346501	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000346501	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409531	ENST00000318562		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409531	ENST00000533256		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409531	ENST00000530636		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
In-frame	ENST00000409531	ENST00000526198		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000409531	ENST00000534449		TCGA	RV	LUAD	TCGA-78-7150-01A	TSPAN4	chr11	850367	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000261965	ENST00000283558		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000261965	ENST00000375630		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000261965	ENST00000487903		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000261965	ENST00000375645		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
5CDS-intron	ENST00000261965	ENST00000419448		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000375669	ENST00000283558		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000375669	ENST00000375630		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000375669	ENST00000487903		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
Frame-shit	ENST00000375669	ENST00000375645		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
5CDS-intron	ENST00000375669	ENST00000419448		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
intron-3CDS	ENST00000462580	ENST00000283558		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
intron-3CDS	ENST00000462580	ENST00000375630		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
intron-3CDS	ENST00000462580	ENST00000487903		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
intron-3CDS	ENST00000462580	ENST00000375645		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
intron-intron	ENST00000462580	ENST00000419448		TCGA	RV	LUAD	TCGA-69-7979-01A	TUBGCP3	chr13	113158346	-	ATP11A	chr13	113490492	+
5UTR-3CDS	ENST00000357681	ENST00000436443		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000357681	ENST00000342788		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000357681	ENST00000402597		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-intron	ENST00000357681	ENST00000484474		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000391954	ENST00000436443		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000391954	ENST00000342788		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000391954	ENST00000402597		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-intron	ENST00000391954	ENST00000484474		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000367218	ENST00000436443		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000367218	ENST00000342788		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000367218	ENST00000402597		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-intron	ENST00000367218	ENST00000484474		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000367219	ENST00000436443		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000367219	ENST00000342788		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-3CDS	ENST00000367219	ENST00000402597		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5UTR-intron	ENST00000367219	ENST00000484474		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000341360	ENST00000436443		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000341360	ENST00000342788		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000341360	ENST00000402597		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-intron	ENST00000341360	ENST00000484474		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000466407	ENST00000436443		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000466407	ENST00000342788		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-3CDS	ENST00000466407	ENST00000402597		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
intron-intron	ENST00000466407	ENST00000484474		TCGA	RV	LUAD	TCGA-05-4398-01A	ATP2B4	chr1	203596347	+	ERBB4	chr2	212989628	-
5CDS-intron	ENST00000280557	ENST00000450485		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000280557	ENST00000333479		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-3UTR	ENST00000280557	ENST00000545065		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000280557	ENST00000537348		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000280557	ENST00000436959		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000280557	ENST00000534995		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000455982	ENST00000450485		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000455982	ENST00000333479		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-3UTR	ENST00000455982	ENST00000545065		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000455982	ENST00000537348		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000455982	ENST00000436959		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
5CDS-intron	ENST00000455982	ENST00000534995		TCGA	RV	LUAD	TCGA-50-5946-01A	DENR	chr12	123249934	+	KNTC1	chr12	123078823	+
Frame-shit	ENST00000250454	ENST00000396526		TCGA	RV	LUAD	TCGA-78-7155-01A	EAPP	chr14	35002650	-	SNX6	chr14	35037219	-
Frame-shit	ENST00000250454	ENST00000396534		TCGA	RV	LUAD	TCGA-78-7155-01A	EAPP	chr14	35002650	-	SNX6	chr14	35037219	-
Frame-shit	ENST00000250454	ENST00000362031		TCGA	RV	LUAD	TCGA-78-7155-01A	EAPP	chr14	35002650	-	SNX6	chr14	35037219	-
Frame-shit	ENST00000250454	ENST00000355110		TCGA	RV	LUAD	TCGA-78-7155-01A	EAPP	chr14	35002650	-	SNX6	chr14	35037219	-
intron-3CDS	ENST00000507810	ENST00000311450		TCGA	RV	LUAD	TCGA-55-6543-01A	EPB41L4A	chr5	111754638	-	PLAC8L1	chr5	145477855	-
Frame-shit	ENST00000261486	ENST00000311450		TCGA	RV	LUAD	TCGA-55-6543-01A	EPB41L4A	chr5	111754638	-	PLAC8L1	chr5	145477855	-
intron-3CDS	ENST00000356218	ENST00000458591		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000356218	ENST00000421551		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000356218	ENST00000544052		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000356218	ENST00000541123		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000356218	ENST00000396629		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3UTR	ENST00000356218	ENST00000554486		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000557103	ENST00000458591		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000557103	ENST00000421551		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000557103	ENST00000544052		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000557103	ENST00000541123		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000557103	ENST00000396629		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3UTR	ENST00000557103	ENST00000554486		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000395718	ENST00000458591		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000395718	ENST00000421551		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000395718	ENST00000544052		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000395718	ENST00000541123		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000395718	ENST00000396629		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3UTR	ENST00000395718	ENST00000554486		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000344768	ENST00000458591		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000344768	ENST00000421551		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000344768	ENST00000544052		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000344768	ENST00000541123		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3CDS	ENST00000344768	ENST00000396629		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
5UTR-3UTR	ENST00000344768	ENST00000554486		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000554167	ENST00000458591		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000554167	ENST00000421551		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000554167	ENST00000544052		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000554167	ENST00000541123		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000554167	ENST00000396629		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3UTR	ENST00000554167	ENST00000554486		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000553556	ENST00000458591		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000553556	ENST00000421551		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000553556	ENST00000544052		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000553556	ENST00000541123		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000553556	ENST00000396629		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3UTR	ENST00000553556	ENST00000554486		TCGA	RV	LUAD	TCGA-44-7670-01A	FRMD6	chr14	52118714	+	SCFD1	chr14	31163979	+
intron-3CDS	ENST00000424272	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000424272	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000424272	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000424272	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409929	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409929	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409929	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000409929	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409589	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409589	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409589	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000409589	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409329	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409329	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409329	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000409329	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409288	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409288	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-3CDS	ENST00000409288	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
intron-intron	ENST00000409288	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
In-frame	ENST00000410023	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
In-frame	ENST00000410023	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
In-frame	ENST00000410023	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
5CDS-intron	ENST00000410023	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
In-frame	ENST00000233946	ENST00000332549		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
In-frame	ENST00000233946	ENST00000393414		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
In-frame	ENST00000233946	ENST00000441002		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
5CDS-intron	ENST00000233946	ENST00000485335		TCGA	RV	LUAD	TCGA-93-A4JO-01A	IL1R1	chr2	102796334	+	IL1R2	chr2	102638649	+
Frame-shit	ENST00000361961	ENST00000262301		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361961	ENST00000399843		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361961	ENST00000543238		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361961	ENST00000568897		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361961	ENST00000568268		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361961	ENST00000539379		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
Frame-shit	ENST00000395670	ENST00000262301		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000395670	ENST00000399843		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000395670	ENST00000543238		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000395670	ENST00000568897		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000395670	ENST00000568268		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000395670	ENST00000539379		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
Frame-shit	ENST00000544797	ENST00000262301		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000544797	ENST00000399843		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000544797	ENST00000543238		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000544797	ENST00000568897		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000544797	ENST00000568268		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000544797	ENST00000539379		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
Frame-shit	ENST00000361418	ENST00000262301		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361418	ENST00000399843		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361418	ENST00000543238		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361418	ENST00000568897		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361418	ENST00000568268		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000361418	ENST00000539379		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
Frame-shit	ENST00000541463	ENST00000262301		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000541463	ENST00000399843		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000541463	ENST00000543238		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000541463	ENST00000568897		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000541463	ENST00000568268		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
5CDS-intron	ENST00000541463	ENST00000539379		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
intron-3CDS	ENST00000547745	ENST00000262301		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
intron-intron	ENST00000547745	ENST00000399843		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
intron-intron	ENST00000547745	ENST00000543238		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
intron-intron	ENST00000547745	ENST00000568897		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
intron-intron	ENST00000547745	ENST00000568268		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
intron-intron	ENST00000547745	ENST00000539379		TCGA	RV	LUAD	TCGA-49-4501-01A	KIF21A	chr12	39836729	-	LMF1	chr16	984254	-
Frame-shit	ENST00000399799	ENST00000399496		TCGA	RV	LUAD	TCGA-97-7552-01A	ROCK1	chr18	18690779	-	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000399799	ENST00000399481		TCGA	RV	LUAD	TCGA-97-7552-01A	ROCK1	chr18	18690779	-	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000399799	ENST00000415309		TCGA	RV	LUAD	TCGA-97-7552-01A	ROCK1	chr18	18690779	-	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000399799	ENST00000327201		TCGA	RV	LUAD	TCGA-97-7552-01A	ROCK1	chr18	18690779	-	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000399799	ENST00000581397		TCGA	RV	LUAD	TCGA-97-7552-01A	ROCK1	chr18	18690779	-	CABYR	chr18	21735665	+
5CDS-5UTR	ENST00000399799	ENST00000399499		TCGA	RV	LUAD	TCGA-97-7552-01A	ROCK1	chr18	18690779	-	CABYR	chr18	21735665	+
In-frame	ENST00000373433	ENST00000361383		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
In-frame	ENST00000373433	ENST00000405275		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
In-frame	ENST00000373433	ENST00000373473		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
5CDS-3UTR	ENST00000373433	ENST00000473857		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
5CDS-intron	ENST00000373433	ENST00000373469		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
intron-3CDS	ENST00000471511	ENST00000361383		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
intron-3CDS	ENST00000471511	ENST00000405275		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
intron-3CDS	ENST00000471511	ENST00000373473		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
intron-3UTR	ENST00000471511	ENST00000473857		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
intron-intron	ENST00000471511	ENST00000373469		TCGA	RV	LUAD	TCGA-44-5644-01A	RPRD1B	chr20	36694658	+	CTNNBL1	chr20	36393599	+
5CDS-intron	ENST00000260128	ENST00000360359		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000260128	ENST00000535627		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000260128	ENST00000470698		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000458141	ENST00000360359		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000458141	ENST00000535627		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000458141	ENST00000470698		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000402687	ENST00000360359		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000402687	ENST00000535627		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000402687	ENST00000470698		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000419716	ENST00000360359		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000419716	ENST00000535627		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000419716	ENST00000470698		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521946	ENST00000360359		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521946	ENST00000535627		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
intron-intron	ENST00000521946	ENST00000470698		TCGA	RV	LUAD	TCGA-91-6829-01A	SULF1	chr8	70573147	+	ANKS1A	chr6	34977682	+
In-frame	ENST00000447399	ENST00000450114		TCGA	RV	LUAD	TCGA-05-4427-01A	SWAP70	chr11	9685825	+	WEE1	chr11	9597435	+
5CDS-5UTR	ENST00000447399	ENST00000299613		TCGA	RV	LUAD	TCGA-05-4427-01A	SWAP70	chr11	9685825	+	WEE1	chr11	9597435	+
In-frame	ENST00000318950	ENST00000450114		TCGA	RV	LUAD	TCGA-05-4427-01A	SWAP70	chr11	9685825	+	WEE1	chr11	9597435	+
5CDS-5UTR	ENST00000318950	ENST00000299613		TCGA	RV	LUAD	TCGA-05-4427-01A	SWAP70	chr11	9685825	+	WEE1	chr11	9597435	+
In-frame	ENST00000186436	ENST00000351008		TCGA	RV	LUAD	TCGA-05-4417-01A	TMEM131	chr2	98543889	-	SPATA16	chr3	172766884	-
Frame-shit	ENST00000425805	ENST00000351008		TCGA	RV	LUAD	TCGA-05-4417-01A	TMEM131	chr2	98543889	-	SPATA16	chr3	172766884	-
Frame-shit	ENST00000397906	ENST00000285402		TCGA	RV	LUAD	TCGA-44-5644-01A	TTC28	chr22	29025540	-	ODF1	chr8	103572680	+
5CDS-intron	ENST00000397906	ENST00000518835		TCGA	RV	LUAD	TCGA-44-5644-01A	TTC28	chr22	29025540	-	ODF1	chr8	103572680	+
intron-3CDS	ENST00000490475	ENST00000285402		TCGA	RV	LUAD	TCGA-44-5644-01A	TTC28	chr22	29025540	-	ODF1	chr8	103572680	+
intron-intron	ENST00000490475	ENST00000518835		TCGA	RV	LUAD	TCGA-44-5644-01A	TTC28	chr22	29025540	-	ODF1	chr8	103572680	+
In-frame	ENST00000409257	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000409257	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000409257	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000409257	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000409257	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000409257	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000589256	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000589256	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000589256	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000589256	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000589256	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000589256	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000588800	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000588800	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000588800	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000588800	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000588800	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000588800	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000591952	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000591952	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000591952	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000591952	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000591952	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000591952	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000327898	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000327898	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000327898	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000327898	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000327898	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000327898	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000586731	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000586731	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000586731	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000586731	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000586731	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
In-frame	ENST00000586731	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
intron-3CDS	ENST00000589664	ENST00000588847		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
intron-3CDS	ENST00000589664	ENST00000588061		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
intron-3CDS	ENST00000589664	ENST00000335749		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
intron-3CDS	ENST00000589664	ENST00000301624		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
intron-3CDS	ENST00000589664	ENST00000541771		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
intron-3CDS	ENST00000589664	ENST00000544502		TCGA	RV	LUAD	TCGA-38-4630-01A	AFMID	chr17	76187141	+	TNRC6C	chr17	76060803	+
Frame-shit	ENST00000369109	ENST00000302035		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
Frame-shit	ENST00000369109	ENST00000235739		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5CDS-3UTR	ENST00000369109	ENST00000538290		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5CDS-intron	ENST00000369109	ENST00000355199		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
Frame-shit	ENST00000360244	ENST00000302035		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
Frame-shit	ENST00000360244	ENST00000235739		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5CDS-3UTR	ENST00000360244	ENST00000538290		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5CDS-intron	ENST00000360244	ENST00000355199		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
Frame-shit	ENST00000414276	ENST00000302035		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
Frame-shit	ENST00000414276	ENST00000235739		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5CDS-3UTR	ENST00000414276	ENST00000538290		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5CDS-intron	ENST00000414276	ENST00000355199		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5UTR-3CDS	ENST00000461320	ENST00000302035		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5UTR-3CDS	ENST00000461320	ENST00000235739		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5UTR-3UTR	ENST00000461320	ENST00000538290		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
5UTR-intron	ENST00000461320	ENST00000355199		TCGA	RV	LUAD	TCGA-L9-A444-01A	APH1A	chr1	150239475	-	SLAMF1	chr1	160580588	-
intron-3CDS	ENST00000588750	ENST00000404984		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000588750	ENST00000402050		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000588750	ENST00000438376		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000588750	ENST00000325979		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
intron-intron	ENST00000588750	ENST00000497572		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000588802	ENST00000404984		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000588802	ENST00000402050		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000588802	ENST00000438376		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000588802	ENST00000325979		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000588802	ENST00000497572		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000252491	ENST00000404984		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000252491	ENST00000402050		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000252491	ENST00000438376		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000252491	ENST00000325979		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000252491	ENST00000497572		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000592885	ENST00000404984		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000592885	ENST00000402050		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000592885	ENST00000438376		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000592885	ENST00000325979		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000592885	ENST00000497572		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000589781	ENST00000404984		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000589781	ENST00000402050		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000589781	ENST00000438376		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000589781	ENST00000325979		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000589781	ENST00000497572		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
In-frame	ENST00000586638	ENST00000404984		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
In-frame	ENST00000586638	ENST00000402050		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
In-frame	ENST00000586638	ENST00000438376		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
In-frame	ENST00000586638	ENST00000325979		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000586638	ENST00000497572		TCGA	RV	LUAD	TCGA-86-A4P7-01A	APOC1	chr19	45422606	+	IQCE	chr7	2641075	+
In-frame	ENST00000317568	ENST00000528416		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000317568	ENST00000415073		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000317568	ENST00000252268		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000317568	ENST00000532264		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000531296	ENST00000528416		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000531296	ENST00000415073		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
In-frame	ENST00000531296	ENST00000252268		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000531296	ENST00000532264		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
In-frame	ENST00000355991	ENST00000528416		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000355991	ENST00000415073		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000355991	ENST00000252268		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000355991	ENST00000532264		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
In-frame	ENST00000416776	ENST00000528416		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000416776	ENST00000415073		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000416776	ENST00000252268		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000416776	ENST00000532264		TCGA	RV	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65154592	+	DPF2	chr11	65119154	+
In-frame	ENST00000225724	ENST00000262325		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000225724	ENST00000592545		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000225724	ENST00000538556		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000225724	ENST00000312678		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000225724	ENST00000589344		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000225724	ENST00000537622		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
5CDS-3UTR	ENST00000225724	ENST00000545922		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000451249	ENST00000262325		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000451249	ENST00000592545		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000451249	ENST00000538556		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000451249	ENST00000312678		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000451249	ENST00000589344		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000451249	ENST00000537622		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
5CDS-3UTR	ENST00000451249	ENST00000545922		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000467337	ENST00000262325		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000467337	ENST00000592545		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000467337	ENST00000538556		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000467337	ENST00000312678		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000467337	ENST00000589344		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000467337	ENST00000537622		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
5CDS-3UTR	ENST00000467337	ENST00000545922		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000581721	ENST00000262325		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000581721	ENST00000592545		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000581721	ENST00000538556		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000581721	ENST00000312678		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000581721	ENST00000589344		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
In-frame	ENST00000581721	ENST00000537622		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
5CDS-3UTR	ENST00000581721	ENST00000545922		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3CDS	ENST00000579905	ENST00000262325		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3CDS	ENST00000579905	ENST00000592545		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3CDS	ENST00000579905	ENST00000538556		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3CDS	ENST00000579905	ENST00000312678		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3CDS	ENST00000579905	ENST00000589344		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3CDS	ENST00000579905	ENST00000537622		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
intron-3UTR	ENST00000579905	ENST00000545922		TCGA	RV	LUAD	TCGA-55-6971-01A	GOSR1	chr17	28819771	+	AP2B1	chr17	34009714	+
5CDS-intron	ENST00000261267	ENST00000216297		TCGA	RV	LUAD	TCGA-97-7552-01A	LYZ	chr12	69748014	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000261267	ENST00000555943		TCGA	RV	LUAD	TCGA-97-7552-01A	LYZ	chr12	69748014	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000549690	ENST00000216297		TCGA	RV	LUAD	TCGA-97-7552-01A	LYZ	chr12	69748014	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000549690	ENST00000555943		TCGA	RV	LUAD	TCGA-97-7552-01A	LYZ	chr12	69748014	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000548839	ENST00000216297		TCGA	RV	LUAD	TCGA-97-7552-01A	LYZ	chr12	69748014	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000548839	ENST00000555943		TCGA	RV	LUAD	TCGA-97-7552-01A	LYZ	chr12	69748014	+	SUPT16H	chr14	21829491	-
intron-5UTR	ENST00000282488	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000282488	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000282486	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000282486	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000355460	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000355460	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000493459	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000493459	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000324210	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000324210	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000498502	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000498502	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000545754	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000545754	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000357472	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000357472	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000324196	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000324196	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000485910	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000485910	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000463374	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000463374	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000492948	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000492948	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000485509	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000485509	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000461436	ENST00000248929		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000461436	ENST00000454798		TCGA	RV	LUAD	TCGA-62-8395-01A	MBNL1	chr3	152150709	+	SGSM3	chr22	40796700	+
Frame-shit	ENST00000355280	ENST00000338130		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000355280	ENST00000380441		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000355280	ENST00000380455		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000355280	ENST00000380454		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000355280	ENST00000380430		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
5CDS-3UTR	ENST00000355280	ENST00000606474		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000347992	ENST00000338130		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000347992	ENST00000380441		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000347992	ENST00000380455		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000347992	ENST00000380454		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000347992	ENST00000380430		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
5CDS-3UTR	ENST00000347992	ENST00000606474		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000453408	ENST00000338130		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000453408	ENST00000380441		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000453408	ENST00000380455		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000453408	ENST00000380454		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
Frame-shit	ENST00000453408	ENST00000380430		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
5CDS-3UTR	ENST00000453408	ENST00000606474		TCGA	RV	LUAD	TCGA-50-8460-01A	MINK1	chr17	4736935	+	NQO2	chr6	3010259	+
5UTR-3CDS	ENST00000282516	ENST00000265113		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
5UTR-intron	ENST00000282516	ENST00000506725		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
5UTR-intron	ENST00000282516	ENST00000381918		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
5UTR-3CDS	ENST00000448238	ENST00000265113		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
5UTR-intron	ENST00000448238	ENST00000506725		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
5UTR-intron	ENST00000448238	ENST00000381918		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
intron-3CDS	ENST00000504430	ENST00000265113		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
intron-intron	ENST00000504430	ENST00000506725		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
intron-intron	ENST00000504430	ENST00000381918		TCGA	RV	LUAD	TCGA-50-5946-01A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36671131	+
5CDS-intron	ENST00000351960	ENST00000394547		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000351960	ENST00000541278		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000351960	ENST00000394546		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000351960	ENST00000546133		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000351960	ENST00000317459		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000351960	ENST00000546089		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000351960	ENST00000540472		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000358965	ENST00000394547		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000358965	ENST00000541278		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000358965	ENST00000394546		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000358965	ENST00000546133		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000358965	ENST00000317459		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000358965	ENST00000546089		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000358965	ENST00000540472		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000393695	ENST00000394547		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000393695	ENST00000541278		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000393695	ENST00000394546		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000393695	ENST00000546133		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000393695	ENST00000317459		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000393695	ENST00000546089		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000393695	ENST00000540472		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-intron	ENST00000543450	ENST00000394547		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-5UTR	ENST00000543450	ENST00000541278		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-5UTR	ENST00000543450	ENST00000394546		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-intron	ENST00000543450	ENST00000546133		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-5UTR	ENST00000543450	ENST00000317459		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-5UTR	ENST00000543450	ENST00000546089		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
intron-intron	ENST00000543450	ENST00000540472		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	NUMA1	chr11	71715686	-	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000394936	ENST00000378746		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394936	ENST00000378735		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394936	ENST00000403231		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394936	ENST00000487055		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394934	ENST00000378746		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394934	ENST00000378735		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394934	ENST00000403231		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
5CDS-intron	ENST00000394934	ENST00000487055		TCGA	RV	LUAD	TCGA-67-3770-01A	PSAP	chr10	73576058	-	KIF3A	chr5	132035266	-
intron-3CDS	ENST00000413953	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000413953	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000413953	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000413953	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000413953	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-intron	ENST00000413953	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-3CDS	ENST00000347140	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-3CDS	ENST00000347140	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-3CDS	ENST00000347140	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-5UTR	ENST00000347140	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-5UTR	ENST00000347140	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-intron	ENST00000347140	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000358907	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000358907	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000358907	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000358907	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000358907	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-intron	ENST00000358907	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-3CDS	ENST00000402412	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-3CDS	ENST00000402412	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-3CDS	ENST00000402412	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-5UTR	ENST00000402412	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-5UTR	ENST00000402412	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
5UTR-intron	ENST00000402412	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000441731	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000441731	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000441731	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000441731	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000441731	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-intron	ENST00000441731	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000403821	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000403821	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000403821	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000403821	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000403821	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-intron	ENST00000403821	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000546843	ENST00000298892		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000546843	ENST00000395805		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000546843	ENST00000251071		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000546843	ENST00000308433		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-5UTR	ENST00000546843	ENST00000417045		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-intron	ENST00000546843	ENST00000538387		TCGA	RV	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30894040	-
intron-3CDS	ENST00000377387	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000377387	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000377387	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000377387	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000377387	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000377387	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-intron	ENST00000377387	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377390	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377390	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377390	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377390	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377390	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377390	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5CDS-intron	ENST00000377390	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377394	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377394	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377394	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377394	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377394	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000377394	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5CDS-intron	ENST00000377394	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000227503	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000227503	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000227503	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000227503	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000227503	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000227503	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5CDS-intron	ENST00000227503	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000334944	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000334944	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000334944	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000334944	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000334944	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000334944	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5CDS-intron	ENST00000334944	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-3CDS	ENST00000422298	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-3CDS	ENST00000422298	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-3CDS	ENST00000422298	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-3CDS	ENST00000422298	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-3CDS	ENST00000422298	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-3CDS	ENST00000422298	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
5UTR-intron	ENST00000422298	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000433274	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000433274	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000433274	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000433274	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000433274	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000433274	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-intron	ENST00000433274	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000489544	ENST00000263846		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000489544	ENST00000540677		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000489544	ENST00000539008		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000489544	ENST00000542836		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000489544	ENST00000542670		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-3CDS	ENST00000489544	ENST00000535826		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
intron-intron	ENST00000489544	ENST00000540831		TCGA	RV	LUAD	TCGA-53-A4EZ-01A	SF1	chr11	64545834	-	SYT7	chr11	61300596	-
Frame-shit	ENST00000394752	ENST00000285018		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
5CDS-5UTR	ENST00000394752	ENST00000497808		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
Frame-shit	ENST00000394750	ENST00000285018		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
5CDS-5UTR	ENST00000394750	ENST00000497808		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
Frame-shit	ENST00000358080	ENST00000285018		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
5CDS-5UTR	ENST00000358080	ENST00000497808		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
Frame-shit	ENST00000296295	ENST00000285018		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
5CDS-5UTR	ENST00000296295	ENST00000497808		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
5UTR-3CDS	ENST00000470575	ENST00000285018		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
5UTR-5UTR	ENST00000470575	ENST00000497808		TCGA	RV	LUAD	TCGA-38-4630-01A	SFMBT1	chr3	53003117	-	WNT7A	chr3	13916670	-
Frame-shit	ENST00000368685	ENST00000368698		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
5CDS-3UTR	ENST00000368685	ENST00000469893		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
5CDS-3UTR	ENST00000368685	ENST00000292169		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
5CDS-3UTR	ENST00000368685	ENST00000368696		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
3UTR-3CDS	ENST00000478558	ENST00000368698		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
3UTR-3UTR	ENST00000478558	ENST00000469893		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
3UTR-3UTR	ENST00000478558	ENST00000292169		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
3UTR-3UTR	ENST00000478558	ENST00000368696		TCGA	RV	LUAD	TCGA-64-1678-01A	SNAPIN	chr1	153632042	+	S100A1	chr1	153604174	+
In-frame	ENST00000514135	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5CDS-intron	ENST00000514135	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
In-frame	ENST00000296595	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5CDS-intron	ENST00000296595	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5UTR-3CDS	ENST00000506536	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5UTR-intron	ENST00000506536	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
In-frame	ENST00000512429	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5CDS-intron	ENST00000512429	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5UTR-3CDS	ENST00000509387	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
5UTR-intron	ENST00000509387	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
intron-3CDS	ENST00000511218	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
intron-intron	ENST00000511218	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
intron-3CDS	ENST00000515293	ENST00000283357		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
intron-intron	ENST00000515293	ENST00000506418		TCGA	RV	LUAD	TCGA-97-8547-01A	TMEM161B	chr5	87524262	-	FAM81B	chr5	94749651	+
Frame-shit	ENST00000344204	ENST00000276893		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
Frame-shit	ENST00000344204	ENST00000381373		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
5CDS-intron	ENST00000344204	ENST00000485617		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
Frame-shit	ENST00000537187	ENST00000276893		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
Frame-shit	ENST00000537187	ENST00000381373		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
5CDS-intron	ENST00000537187	ENST00000485617		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000509967	ENST00000276893		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000509967	ENST00000381373		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-intron	ENST00000509967	ENST00000485617		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000515710	ENST00000276893		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000515710	ENST00000381373		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-intron	ENST00000515710	ENST00000485617		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000344135	ENST00000276893		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000344135	ENST00000381373		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
intron-intron	ENST00000344135	ENST00000485617		TCGA	RV	LUAD	TCGA-75-6207-01A	TRIO	chr5	14143991	+	UHRF2	chr9	6420912	+
In-frame	ENST00000304621	ENST00000313654		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000304621	ENST00000399516		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000304621	ENST00000269217		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000304621	ENST00000587184		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
5CDS-3UTR	ENST00000304621	ENST00000588770		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000317571	ENST00000313654		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000317571	ENST00000399516		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000317571	ENST00000269217		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
In-frame	ENST00000317571	ENST00000587184		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
5CDS-3UTR	ENST00000317571	ENST00000588770		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000578150	ENST00000313654		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000578150	ENST00000399516		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000578150	ENST00000269217		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000578150	ENST00000587184		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3UTR	ENST00000578150	ENST00000588770		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000584250	ENST00000313654		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000584250	ENST00000399516		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000584250	ENST00000269217		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000584250	ENST00000587184		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3UTR	ENST00000584250	ENST00000588770		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000577185	ENST00000313654		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000577185	ENST00000399516		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000577185	ENST00000269217		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000577185	ENST00000587184		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3UTR	ENST00000577185	ENST00000588770		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000540918	ENST00000313654		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000540918	ENST00000399516		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000540918	ENST00000269217		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3CDS	ENST00000540918	ENST00000587184		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
intron-3UTR	ENST00000540918	ENST00000588770		TCGA	RV	LUAD	TCGA-49-6745-01A	TTC39C	chr18	21663045	+	LAMA3	chr18	21526108	+
Frame-shit	ENST00000449054	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000449054	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000449054	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000449054	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000449054	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000449054	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000449054	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000449054	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000449054	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000449054	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000449054	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000379238	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000379238	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000379238	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000379238	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000379238	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000379238	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000379238	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000379238	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000379238	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000379238	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000379238	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000360802	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000360802	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000360802	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000360802	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000360802	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000360802	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000360802	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000360802	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000360802	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000360802	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000360802	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379239	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379239	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379239	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379239	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000539807	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-intron	ENST00000539807	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-intron	ENST00000539807	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-intron	ENST00000539807	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000418786	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000418786	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000418786	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000418786	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
Frame-shit	ENST00000418786	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000418786	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000418786	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
In-frame	ENST00000418786	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000418786	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000418786	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5CDS-intron	ENST00000418786	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379225	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379225	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379225	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379225	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000379235	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379235	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379235	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-intron	ENST00000379235	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000379825		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000309615		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000397172		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000379817		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000436040		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000379819		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000468275		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-3CDS	ENST00000480885	ENST00000463596		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-intron	ENST00000480885	ENST00000476858		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-intron	ENST00000480885	ENST00000379813		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
5UTR-intron	ENST00000480885	ENST00000473270		TCGA	RV	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32987844	-
intron-3CDS	ENST00000358413	ENST00000419071		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
intron-3CDS	ENST00000358413	ENST00000268835		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
intron-3CDS	ENST00000358413	ENST00000536323		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
intron-3CDS	ENST00000358413	ENST00000542013		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
intron-intron	ENST00000358413	ENST00000575337		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000278772	ENST00000419071		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000278772	ENST00000268835		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000278772	ENST00000536323		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000278772	ENST00000542013		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-intron	ENST00000278772	ENST00000575337		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000381253	ENST00000419071		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000381253	ENST00000268835		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000381253	ENST00000536323		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-3CDS	ENST00000381253	ENST00000542013		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
5UTR-intron	ENST00000381253	ENST00000575337		TCGA	RV	LUAD	TCGA-97-A4LX-01A	ZNF343	chr20	2489527	-	PRPSAP2	chr17	18827227	+
Frame-shit	ENST00000419735	ENST00000458078		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
Frame-shit	ENST00000419735	ENST00000436302		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000419735	ENST00000435976		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000419735	ENST00000359383		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000419735	ENST00000494702		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000477775	ENST00000458078		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000477775	ENST00000436302		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000477775	ENST00000435976		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000477775	ENST00000359383		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000477775	ENST00000494702		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
Frame-shit	ENST00000318724	ENST00000458078		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
Frame-shit	ENST00000318724	ENST00000436302		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000318724	ENST00000435976		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000318724	ENST00000359383		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000318724	ENST00000494702		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000478915	ENST00000458078		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000478915	ENST00000436302		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000478915	ENST00000435976		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000478915	ENST00000359383		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000478915	ENST00000494702		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000388807	ENST00000458078		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000388807	ENST00000436302		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000388807	ENST00000435976		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000388807	ENST00000359383		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000388807	ENST00000494702		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000472910	ENST00000458078		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000472910	ENST00000436302		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000472910	ENST00000435976		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000472910	ENST00000359383		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000472910	ENST00000494702		TCGA	RV	LUAD	TCGA-44-A479-01A	ATXN7L1	chr7	105516258	-	AGBL3	chr7	134819593	+
intron-intron	ENST00000339438	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000339438	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000438362	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000438362	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000358528	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000358528	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000261443	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000261443	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000530886	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000530886	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000369530	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000369530	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000483407	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000483407	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000534699	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
intron-intron	ENST00000534699	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7149-01A	CSDE1	chr1	115259916	-	DDX27	chr20	47849303	+
In-frame	ENST00000453981	ENST00000263847		TCGA	RV	LUAD	TCGA-83-5908-01A	DOCK8	chr9	390566	+	OSBP	chr11	59369311	-
In-frame	ENST00000432829	ENST00000263847		TCGA	RV	LUAD	TCGA-83-5908-01A	DOCK8	chr9	390566	+	OSBP	chr11	59369311	-
In-frame	ENST00000469391	ENST00000263847		TCGA	RV	LUAD	TCGA-83-5908-01A	DOCK8	chr9	390566	+	OSBP	chr11	59369311	-
In-frame	ENST00000382331	ENST00000263847		TCGA	RV	LUAD	TCGA-83-5908-01A	DOCK8	chr9	390566	+	OSBP	chr11	59369311	-
In-frame	ENST00000382329	ENST00000263847		TCGA	RV	LUAD	TCGA-83-5908-01A	DOCK8	chr9	390566	+	OSBP	chr11	59369311	-
intron-3CDS	ENST00000493666	ENST00000263847		TCGA	RV	LUAD	TCGA-83-5908-01A	DOCK8	chr9	390566	+	OSBP	chr11	59369311	-
5UTR-3CDS	ENST00000373871	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373871	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373871	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000436342	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000436342	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000436342	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000373864	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000373864	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000373864	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000540618	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000540618	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000540618	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000545175	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000545175	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000545175	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373863	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373863	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000373863	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000471498	ENST00000393963		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000471498	ENST00000261047		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
5UTR-3CDS	ENST00000471498	ENST00000471108		TCGA	RV	LUAD	TCGA-49-AAR3-01A	EYA3	chr1	28415035	-	GUCA1C	chr3	108639432	-
intron-3CDS	ENST00000595437	ENST00000377595		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
intron-intron	ENST00000595437	ENST00000606347		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
5UTR-3CDS	ENST00000376586	ENST00000377595		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
5UTR-intron	ENST00000376586	ENST00000606347		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
5UTR-3CDS	ENST00000319562	ENST00000377595		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
5UTR-intron	ENST00000319562	ENST00000606347		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
5UTR-3CDS	ENST00000376581	ENST00000377595		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
5UTR-intron	ENST00000376581	ENST00000606347		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
intron-3CDS	ENST00000593990	ENST00000377595		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
intron-intron	ENST00000593990	ENST00000606347		TCGA	RV	LUAD	TCGA-69-7979-01A	FARP1	chr13	98795746	+	UCHL3	chr13	76134889	+
Frame-shit	ENST00000372572	ENST00000349499		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000372572	ENST00000360731		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000372573	ENST00000349499		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000372573	ENST00000360731		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000361346	ENST00000349499		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000361346	ENST00000360731		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000361776	ENST00000349499		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000361776	ENST00000360731		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000545068	ENST00000349499		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
Frame-shit	ENST00000545068	ENST00000360731		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
intron-3CDS	ENST00000372571	ENST00000349499		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
intron-3CDS	ENST00000372571	ENST00000360731		TCGA	RV	LUAD	TCGA-55-7576-01A	FOXJ3	chr1	42730786	-	CLIC6	chr21	36079578	+
In-frame	ENST00000269228	ENST00000534526		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
In-frame	ENST00000269228	ENST00000531134		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
In-frame	ENST00000269228	ENST00000427716		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-5UTR	ENST00000269228	ENST00000266482		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-5UTR	ENST00000269228	ENST00000546442		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-5UTR	ENST00000269228	ENST00000525053		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-intron	ENST00000269228	ENST00000381025		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-intron	ENST00000269228	ENST00000472289		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-intron	ENST00000269228	ENST00000473513		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
In-frame	ENST00000412552	ENST00000534526		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
In-frame	ENST00000412552	ENST00000531134		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
In-frame	ENST00000412552	ENST00000427716		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-5UTR	ENST00000412552	ENST00000266482		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-5UTR	ENST00000412552	ENST00000546442		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-5UTR	ENST00000412552	ENST00000525053		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-intron	ENST00000412552	ENST00000381025		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-intron	ENST00000412552	ENST00000472289		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5CDS-intron	ENST00000412552	ENST00000473513		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-3CDS	ENST00000540608	ENST00000534526		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-3CDS	ENST00000540608	ENST00000531134		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-3CDS	ENST00000540608	ENST00000427716		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-5UTR	ENST00000540608	ENST00000266482		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-5UTR	ENST00000540608	ENST00000546442		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-5UTR	ENST00000540608	ENST00000525053		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-intron	ENST00000540608	ENST00000381025		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-intron	ENST00000540608	ENST00000472289		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-intron	ENST00000540608	ENST00000473513		TCGA	RV	LUAD	TCGA-05-4395-01A	NPC1	chr18	21124924	-	FGD4	chr12	32751431	+
5UTR-3CDS	ENST00000439951	ENST00000373913		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000439951	ENST00000401952		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000439951	ENST00000373907		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000439951	ENST00000339266		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3UTR	ENST00000439951	ENST00000475894		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3UTR	ENST00000439951	ENST00000340491		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000313733	ENST00000373913		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000313733	ENST00000401952		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000313733	ENST00000373907		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000313733	ENST00000339266		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3UTR	ENST00000313733	ENST00000475894		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3UTR	ENST00000313733	ENST00000340491		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000358053	ENST00000373913		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000358053	ENST00000401952		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000358053	ENST00000373907		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3CDS	ENST00000358053	ENST00000339266		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3UTR	ENST00000358053	ENST00000475894		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
5UTR-3UTR	ENST00000358053	ENST00000340491		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000471817	ENST00000373913		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000471817	ENST00000401952		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000471817	ENST00000373907		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000471817	ENST00000339266		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000471817	ENST00000475894		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000471817	ENST00000340491		TCGA	RV	LUAD	TCGA-75-6211-01A	OSBPL2	chr20	60813653	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000216277	ENST00000267584		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000216277	ENST00000555570		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000216277	ENST00000554313		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-3CDS	ENST00000557320	ENST00000267584		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-intron	ENST00000557320	ENST00000555570		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-intron	ENST00000557320	ENST00000554313		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-3CDS	ENST00000554130	ENST00000267584		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-intron	ENST00000554130	ENST00000555570		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-intron	ENST00000554130	ENST00000554313		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-3CDS	ENST00000557471	ENST00000267584		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-intron	ENST00000557471	ENST00000555570		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-intron	ENST00000557471	ENST00000554313		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
In-frame	ENST00000392990	ENST00000267584		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000392990	ENST00000555570		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000392990	ENST00000554313		TCGA	RV	LUAD	TCGA-55-8094-01A	PAPOLA	chr14	97022750	+	AK7	chr14	96904172	+
intron-5UTR	ENST00000398081	ENST00000380671		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000398081	ENST00000288350		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000398081	ENST00000358268		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-intron	ENST00000398081	ENST00000495240		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000398081	ENST00000485895		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000468090	ENST00000380671		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000468090	ENST00000288350		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000468090	ENST00000358268		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-intron	ENST00000468090	ENST00000495240		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000468090	ENST00000485895		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000291565	ENST00000380671		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000291565	ENST00000288350		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000291565	ENST00000358268		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-intron	ENST00000291565	ENST00000495240		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000291565	ENST00000485895		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000327574	ENST00000380671		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000327574	ENST00000288350		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000327574	ENST00000358268		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-intron	ENST00000327574	ENST00000495240		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000327574	ENST00000485895		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000476313	ENST00000380671		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000476313	ENST00000288350		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000476313	ENST00000358268		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-intron	ENST00000476313	ENST00000495240		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
intron-5UTR	ENST00000476313	ENST00000485895		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000467908	ENST00000380671		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000467908	ENST00000288350		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000467908	ENST00000358268		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-intron	ENST00000467908	ENST00000495240		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
5CDS-5UTR	ENST00000467908	ENST00000485895		TCGA	RV	LUAD	TCGA-05-4397-01A	PDXK	chr21	45168961	+	LCA5L	chr21	40801137	-
Frame-shit	ENST00000244137	ENST00000336915		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
In-frame	ENST00000244137	ENST00000584924		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000397032	ENST00000336915		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000397032	ENST00000584924		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000436370	ENST00000336915		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
In-frame	ENST00000436370	ENST00000584924		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000591968	ENST00000336915		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
intron-3CDS	ENST00000591968	ENST00000584924		TCGA	RV	LUAD	TCGA-69-A59K-01A	PEPD	chr19	33953901	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000361473	ENST00000360079		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000361473	ENST00000402580		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000361473	ENST00000428575		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000361473	ENST00000359308		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000361473	ENST00000405878		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000361473	ENST00000405506		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000352766	ENST00000360079		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000352766	ENST00000402580		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000352766	ENST00000428575		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000352766	ENST00000359308		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000352766	ENST00000405878		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000352766	ENST00000405506		TCGA	RV	LUAD	TCGA-55-A4DG-01A	PRR5-ARHGAP8	chr22	45182486	+	XRCC6	chr22	42054256	+
Frame-shit	ENST00000522684	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
In-frame	ENST00000535192	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
In-frame	ENST00000519465	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
In-frame	ENST00000517887	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
In-frame	ENST00000521059	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
Frame-shit	ENST00000395218	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
In-frame	ENST00000538769	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
Frame-shit	ENST00000340930	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
Frame-shit	ENST00000519419	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
Frame-shit	ENST00000430260	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
intron-3CDS	ENST00000519881	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
intron-3CDS	ENST00000520892	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
intron-3CDS	ENST00000519635	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
intron-3CDS	ENST00000517712	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
intron-3CDS	ENST00000522950	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
intron-3CDS	ENST00000520151	ENST00000303545		TCGA	RV	LUAD	TCGA-86-8359-01A	PTK2	chr8	141696731	-	RNF139	chr8	125498072	+
In-frame	ENST00000372733	ENST00000353703		TCGA	RV	LUAD	TCGA-97-8177-01A	SDC4	chr20	43976965	-	YWHAB	chr20	43532634	+
5CDS-3UTR	ENST00000372733	ENST00000479421		TCGA	RV	LUAD	TCGA-97-8177-01A	SDC4	chr20	43976965	-	YWHAB	chr20	43532634	+
5CDS-3UTR	ENST00000372733	ENST00000372839		TCGA	RV	LUAD	TCGA-97-8177-01A	SDC4	chr20	43976965	-	YWHAB	chr20	43532634	+
5UTR-3CDS	ENST00000537976	ENST00000353703		TCGA	RV	LUAD	TCGA-97-8177-01A	SDC4	chr20	43976965	-	YWHAB	chr20	43532634	+
5UTR-3UTR	ENST00000537976	ENST00000479421		TCGA	RV	LUAD	TCGA-97-8177-01A	SDC4	chr20	43976965	-	YWHAB	chr20	43532634	+
5UTR-3UTR	ENST00000537976	ENST00000372839		TCGA	RV	LUAD	TCGA-97-8177-01A	SDC4	chr20	43976965	-	YWHAB	chr20	43532634	+
5CDS-intron	ENST00000318561	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000318561	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000521315	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000521315	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000437090	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000437090	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000520605	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000520605	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000522109	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000522109	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000524255	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000524255	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000522880	ENST00000216297		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000522880	ENST00000555943		TCGA	RV	LUAD	TCGA-44-7670-01A	SFTPC	chr8	22021989	+	SUPT16H	chr14	21829491	-
In-frame	ENST00000553612	ENST00000604948		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
In-frame	ENST00000553612	ENST00000557565		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
In-frame	ENST00000553612	ENST00000250377		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
In-frame	ENST00000553612	ENST00000321130		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
In-frame	ENST00000553612	ENST00000534898		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
In-frame	ENST00000553612	ENST00000603544		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
In-frame	ENST00000553612	ENST00000605870		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
5CDS-intron	ENST00000553612	ENST00000603588		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000604948		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000557565		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000250377		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000321130		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000534898		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000603544		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000434192	ENST00000605870		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
5CDS-intron	ENST00000434192	ENST00000603588		TCGA	RV	LUAD	TCGA-78-8660-01A	GTF2A1	chr14	81682757	-	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000398645	ENST00000367922		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
intron-3CDS	ENST00000398645	ENST00000367921		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
intron-3CDS	ENST00000529006	ENST00000367922		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
intron-3CDS	ENST00000529006	ENST00000367921		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
intron-3CDS	ENST00000526258	ENST00000367922		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
intron-3CDS	ENST00000526258	ENST00000367921		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
5UTR-3CDS	ENST00000308783	ENST00000367922		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
5UTR-3CDS	ENST00000308783	ENST00000367921		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
Frame-shit	ENST00000530342	ENST00000367922		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
Frame-shit	ENST00000530342	ENST00000367921		TCGA	RV	LUAD	TCGA-86-8054-01A	KDM2A	chr11	67007840	+	DDR2	chr1	162749902	+
Frame-shit	ENST00000397054	ENST00000372259		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
Frame-shit	ENST00000397054	ENST00000372257		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
In-frame	ENST00000397054	ENST00000537474		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
5CDS-intron	ENST00000397054	ENST00000495828		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
Frame-shit	ENST00000236040	ENST00000372259		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
Frame-shit	ENST00000236040	ENST00000372257		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
In-frame	ENST00000236040	ENST00000537474		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
5CDS-intron	ENST00000236040	ENST00000495828		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
Frame-shit	ENST00000296388	ENST00000372259		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
Frame-shit	ENST00000296388	ENST00000372257		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
In-frame	ENST00000296388	ENST00000537474		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
5CDS-intron	ENST00000296388	ENST00000495828		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
intron-3CDS	ENST00000462474	ENST00000372259		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
intron-3CDS	ENST00000462474	ENST00000372257		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
intron-3CDS	ENST00000462474	ENST00000537474		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
intron-intron	ENST00000462474	ENST00000495828		TCGA	RV	LUAD	TCGA-55-6982-01A	LEPRE1	chr1	43227994	-	ERI3	chr1	44687312	-
In-frame	ENST00000282516	ENST00000513610		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
In-frame	ENST00000282516	ENST00000507288		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000282516	ENST00000274203		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000282516	ENST00000515803		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000282516	ENST00000427430		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000282516	ENST00000505695		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000282516	ENST00000512061		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
In-frame	ENST00000448238	ENST00000513610		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
In-frame	ENST00000448238	ENST00000507288		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000448238	ENST00000274203		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000448238	ENST00000515803		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000448238	ENST00000427430		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000448238	ENST00000505695		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000448238	ENST00000512061		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-3CDS	ENST00000504430	ENST00000513610		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-3CDS	ENST00000504430	ENST00000507288		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-intron	ENST00000504430	ENST00000274203		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-intron	ENST00000504430	ENST00000515803		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-intron	ENST00000504430	ENST00000427430		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-intron	ENST00000504430	ENST00000505695		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
intron-intron	ENST00000504430	ENST00000512061		TCGA	RV	LUAD	TCGA-05-4426-01A	NIPBL	chr5	37010327	+	MYO10	chr5	16877816	-
5CDS-intron	ENST00000271526	ENST00000537040		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000451864		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000400992		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000368246		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000255013		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000271526	ENST00000368249		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-3UTR	ENST00000271526	ENST00000494874		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000537040		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000451864		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000400992		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000368246		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000255013		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-intron	ENST00000353233	ENST00000368249		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
5CDS-3UTR	ENST00000353233	ENST00000494874		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000537040		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000451864		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000400992		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000368246		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000255013		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-intron	ENST00000491853	ENST00000368249		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
intron-3UTR	ENST00000491853	ENST00000494874		TCGA	RV	LUAD	TCGA-49-AARE-01A	PRCC	chr1	156738031	+	RHBG	chr1	156352539	+
In-frame	ENST00000535781	ENST00000369911		TCGA	RV	LUAD	TCGA-91-7771-01A	PRPF6	chr20	62626835	+	DNAJC5	chr20	62562204	+
In-frame	ENST00000535781	ENST00000360864		TCGA	RV	LUAD	TCGA-91-7771-01A	PRPF6	chr20	62626835	+	DNAJC5	chr20	62562204	+
In-frame	ENST00000262435	ENST00000339474		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000262435	ENST00000584306		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000262435	ENST00000400877		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000262435	ENST00000334962		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000262435	ENST00000319651		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
5CDS-intron	ENST00000262435	ENST00000577487		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
intron-3CDS	ENST00000578200	ENST00000339474		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
intron-3CDS	ENST00000578200	ENST00000584306		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
intron-3CDS	ENST00000578200	ENST00000400877		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
intron-3CDS	ENST00000578200	ENST00000334962		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
intron-3CDS	ENST00000578200	ENST00000319651		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
intron-intron	ENST00000578200	ENST00000577487		TCGA	RV	LUAD	TCGA-78-8662-01A	SMURF2	chr17	62657947	-	LRRC37A3	chr17	62852007	-
In-frame	ENST00000358465	ENST00000355710		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
In-frame	ENST00000358465	ENST00000340058		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
In-frame	ENST00000369543	ENST00000355710		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
In-frame	ENST00000369543	ENST00000340058		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
Frame-shit	ENST00000450349	ENST00000355710		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
Frame-shit	ENST00000450349	ENST00000340058		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
intron-3CDS	ENST00000476908	ENST00000355710		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
intron-3CDS	ENST00000476908	ENST00000340058		TCGA	RV	LUAD	TCGA-55-6543-01A	TRIM33	chr1	114964058	-	RET	chr10	43612032	+
In-frame	ENST00000361183	ENST00000397752		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
In-frame	ENST00000361183	ENST00000318493		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000361183	ENST00000436117		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000361183	ENST00000495962		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000361183	ENST00000539704		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
In-frame	ENST00000458284	ENST00000397752		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
In-frame	ENST00000458284	ENST00000318493		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000458284	ENST00000436117		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000458284	ENST00000495962		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000458284	ENST00000539704		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
In-frame	ENST00000490693	ENST00000397752		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
In-frame	ENST00000490693	ENST00000318493		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000490693	ENST00000436117		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000490693	ENST00000495962		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
5CDS-intron	ENST00000490693	ENST00000539704		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
intron-3CDS	ENST00000466023	ENST00000397752		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
intron-3CDS	ENST00000466023	ENST00000318493		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
intron-intron	ENST00000466023	ENST00000436117		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
intron-intron	ENST00000466023	ENST00000495962		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
intron-intron	ENST00000466023	ENST00000539704		TCGA	RV	LUAD	TCGA-78-7220-01A	CAPZA2	chr7	116528244	+	MET	chr7	116414935	+
Frame-shit	ENST00000261769	ENST00000609654		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000609383		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000536186		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000435240		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000265334		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000523054		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000521118		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000523832		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
In-frame	ENST00000261769	ENST00000521755		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000261769	ENST00000435211		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
5CDS-intron	ENST00000261769	ENST00000522501		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000609654		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000609383		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000536186		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000435240		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000265334		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000523054		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000521118		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000523832		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
In-frame	ENST00000422392	ENST00000521755		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
Frame-shit	ENST00000422392	ENST00000435211		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
5CDS-intron	ENST00000422392	ENST00000522501		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000609654		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000609383		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000536186		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000435240		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000265334		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000523054		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000521118		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000523832		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000521755		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-3CDS	ENST00000562836	ENST00000435211		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
3UTR-intron	ENST00000562836	ENST00000522501		TCGA	RV	LUAD	TCGA-05-4427-01A	CDH1	chr16	68856128	+	CDKL3	chr5	133644157	-
In-frame	ENST00000320876	ENST00000261597		TCGA	RV	LUAD	TCGA-62-A46U-01A	SMCHD1	chr18	2688745	+	NDC80	chr18	2585112	+
In-frame	ENST00000261598	ENST00000261597		TCGA	RV	LUAD	TCGA-62-A46U-01A	SMCHD1	chr18	2688745	+	NDC80	chr18	2585112	+
intron-3CDS	ENST00000609587	ENST00000261597		TCGA	RV	LUAD	TCGA-62-A46U-01A	SMCHD1	chr18	2688745	+	NDC80	chr18	2585112	+
intron-3CDS	ENST00000596528	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000596528	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-intron	ENST00000596528	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000599743	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
5CDS-intron	ENST00000599743	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
In-frame	ENST00000300619	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
5CDS-intron	ENST00000300619	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000336838		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000263630		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000436346		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000413716		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000397082	ENST00000422883		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-intron	ENST00000397082	ENST00000471947		TCGA	RV	LUAD	TCGA-50-5946-01A	ZNF91	chr19	23556544	-	CCDC88A	chr2	55523659	-
intron-3CDS	ENST00000264211	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000264211	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000264211	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000264211	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000264211	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000264211	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000400422	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000400422	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000400422	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000400422	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000400422	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-5UTR	ENST00000400422	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000602326	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000602326	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000602326	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000602326	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000602326	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-5UTR	ENST00000602326	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374935	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374935	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374935	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374935	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374935	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000374935	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374937	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374937	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374937	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374937	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374937	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000374937	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000536266	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000536266	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000536266	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000536266	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000536266	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000536266	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374933	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374933	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374933	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374933	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000374933	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000374933	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000544689	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000544689	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000544689	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000544689	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000544689	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000544689	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000356916	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000356916	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000356916	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000356916	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000356916	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-5UTR	ENST00000356916	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000374927	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000374927	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000374927	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000374927	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-3CDS	ENST00000374927	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5UTR-5UTR	ENST00000374927	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000537738	ENST00000415912		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000537738	ENST00000357071		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000537738	ENST00000374893		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000537738	ENST00000436918		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-3CDS	ENST00000537738	ENST00000264205		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
intron-5UTR	ENST00000537738	ENST00000528294		TCGA	RV	LUAD	TCGA-91-8499-01A	EIF4G3	chr1	21415631	-	ECE1	chr1	21573856	-
5CDS-intron	ENST00000302068	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000302068	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000509493	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000502545	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7148-01A	FGB	chr4	155492238	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000355904	ENST00000538486		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000397323		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000320203		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000287771		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000339877		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000517860		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000520161		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000519647		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000520191		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355904	ENST00000520916		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000538486		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000397323		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000320203		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000287771		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000339877		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000517860		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000520161		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000519647		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000520191		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000522833	ENST00000520916		TCGA	RV	LUAD	TCGA-05-4427-01A	GTF2E2	chr8	30510950	-	RBPMS	chr8	30402011	+
intron-5UTR	ENST00000591778	ENST00000228741		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000591778	ENST00000552142		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-intron	ENST00000591778	ENST00000549529		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000262776	ENST00000228741		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000262776	ENST00000552142		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-intron	ENST00000262776	ENST00000549529		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000585407	ENST00000228741		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000585407	ENST00000552142		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
intron-intron	ENST00000585407	ENST00000549529		TCGA	RV	LUAD	TCGA-99-7458-01A	LGALS3BP	chr17	76967338	-	ELK3	chr12	96588323	+
Frame-shit	ENST00000332830	ENST00000315392		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000332830	ENST00000493200		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-5UTR	ENST00000332830	ENST00000539608		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000332830	ENST00000444911		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000332830	ENST00000394316		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
Frame-shit	ENST00000577226	ENST00000315392		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000577226	ENST00000493200		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-5UTR	ENST00000577226	ENST00000539608		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000577226	ENST00000444911		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000577226	ENST00000394316		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
Frame-shit	ENST00000268756	ENST00000315392		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000268756	ENST00000493200		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-5UTR	ENST00000268756	ENST00000539608		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000268756	ENST00000444911		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000268756	ENST00000394316		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
intron-3CDS	ENST00000582655	ENST00000315392		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
intron-intron	ENST00000582655	ENST00000493200		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
intron-5UTR	ENST00000582655	ENST00000539608		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
intron-intron	ENST00000582655	ENST00000444911		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
intron-intron	ENST00000582655	ENST00000394316		TCGA	RV	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37296085	-
5CDS-intron	ENST00000368012	ENST00000468311		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PVRL4	chr1	161059008	-	PFDN2	chr1	161072165	-
5CDS-intron	ENST00000368012	ENST00000368010		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PVRL4	chr1	161059008	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000486694	ENST00000468311		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PVRL4	chr1	161059008	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000486694	ENST00000368010		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PVRL4	chr1	161059008	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000453926	ENST00000468311		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PVRL4	chr1	161059008	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000453926	ENST00000368010		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PVRL4	chr1	161059008	-	PFDN2	chr1	161072165	-
In-frame	ENST00000218340	ENST00000368521		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
In-frame	ENST00000218340	ENST00000362076		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
In-frame	ENST00000218340	ENST00000350592		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
In-frame	ENST00000218340	ENST00000368519		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
5CDS-intron	ENST00000218340	ENST00000483282		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
5CDS-intron	ENST00000218340	ENST00000368518		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
5CDS-intron	ENST00000218340	ENST00000368516		TCGA	RV	LUAD	TCGA-L9-A444-01A	RP2	chrX	46696637	+	C1orf43	chr1	154187050	-
In-frame	ENST00000321153	ENST00000319006		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
In-frame	ENST00000321153	ENST00000528097		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
5CDS-intron	ENST00000321153	ENST00000532202		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
3UTR-3CDS	ENST00000532004	ENST00000319006		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
3UTR-3CDS	ENST00000532004	ENST00000528097		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
3UTR-intron	ENST00000532004	ENST00000532202		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
In-frame	ENST00000530797	ENST00000319006		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
In-frame	ENST00000530797	ENST00000528097		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
5CDS-intron	ENST00000530797	ENST00000532202		TCGA	RV	LUAD	TCGA-67-3771-01A	RPLP2	chr11	811645	+	TALDO1	chr11	755879	+
In-frame	ENST00000375807	ENST00000356462		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000375807	ENST00000400345		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000375807	ENST00000589054		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000375807	ENST00000256832		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
In-frame	ENST00000375807	ENST00000382850		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000375807	ENST00000256830		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000588516		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000456986		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000435432		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000357895		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000586263		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000456173		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000375807	ENST00000431212		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
In-frame	ENST00000339901	ENST00000356462		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000339901	ENST00000400345		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000339901	ENST00000589054		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000339901	ENST00000256832		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
In-frame	ENST00000339901	ENST00000382850		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000339901	ENST00000256830		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000588516		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000456986		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000435432		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000357895		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000586263		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000456173		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000339901	ENST00000431212		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
In-frame	ENST00000534113	ENST00000356462		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000534113	ENST00000400345		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000534113	ENST00000589054		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000534113	ENST00000256832		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
In-frame	ENST00000534113	ENST00000382850		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
Frame-shit	ENST00000534113	ENST00000256830		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000588516		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000456986		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000435432		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000357895		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000586263		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000456173		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5CDS-intron	ENST00000534113	ENST00000431212		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-3CDS	ENST00000470305	ENST00000356462		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-3CDS	ENST00000470305	ENST00000400345		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-3CDS	ENST00000470305	ENST00000589054		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-3CDS	ENST00000470305	ENST00000256832		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-3CDS	ENST00000470305	ENST00000382850		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-3CDS	ENST00000470305	ENST00000256830		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000588516		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000456986		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000435432		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000357895		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000586263		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000456173		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
intron-intron	ENST00000470305	ENST00000431212		TCGA	RV	LUAD	TCGA-86-8075-01A	SECISBP2	chr9	91956394	+	NEDD4L	chr18	56063399	+
5UTR-3CDS	ENST00000393328	ENST00000170564		TCGA	RV	LUAD	TCGA-69-A59K-01A	SPOP	chr17	47755295	-	GPATCH1	chr19	33609916	+
5UTR-3CDS	ENST00000393331	ENST00000170564		TCGA	RV	LUAD	TCGA-69-A59K-01A	SPOP	chr17	47755295	-	GPATCH1	chr19	33609916	+
5UTR-3CDS	ENST00000347630	ENST00000170564		TCGA	RV	LUAD	TCGA-69-A59K-01A	SPOP	chr17	47755295	-	GPATCH1	chr19	33609916	+
5UTR-3CDS	ENST00000504102	ENST00000170564		TCGA	RV	LUAD	TCGA-69-A59K-01A	SPOP	chr17	47755295	-	GPATCH1	chr19	33609916	+
intron-3CDS	ENST00000503676	ENST00000170564		TCGA	RV	LUAD	TCGA-69-A59K-01A	SPOP	chr17	47755295	-	GPATCH1	chr19	33609916	+
5UTR-3CDS	ENST00000513080	ENST00000170564		TCGA	RV	LUAD	TCGA-69-A59K-01A	SPOP	chr17	47755295	-	GPATCH1	chr19	33609916	+
intron-intron	ENST00000371348	ENST00000216297		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371348	ENST00000555943		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371344	ENST00000216297		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371344	ENST00000555943		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000234831	ENST00000216297		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000234831	ENST00000555943		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371341	ENST00000216297		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371341	ENST00000555943		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000470395	ENST00000216297		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000470395	ENST00000555943		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371337	ENST00000216297		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371337	ENST00000555943		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	TMEM59	chr1	54497690	-	SUPT16H	chr14	21829491	-
In-frame	ENST00000264335	ENST00000301335		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
In-frame	ENST00000264335	ENST00000571650		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
In-frame	ENST00000264335	ENST00000382147		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
In-frame	ENST00000264335	ENST00000412517		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
5CDS-intron	ENST00000264335	ENST00000574274		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
Frame-shit	ENST00000571732	ENST00000301335		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
Frame-shit	ENST00000571732	ENST00000571650		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
Frame-shit	ENST00000571732	ENST00000382147		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
Frame-shit	ENST00000571732	ENST00000412517		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
5CDS-intron	ENST00000571732	ENST00000574274		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000573026	ENST00000301335		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000573026	ENST00000571650		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000573026	ENST00000382147		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000573026	ENST00000412517		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-intron	ENST00000573026	ENST00000574274		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000575977	ENST00000301335		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000575977	ENST00000571650		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000575977	ENST00000382147		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000575977	ENST00000412517		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-intron	ENST00000575977	ENST00000574274		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000498643	ENST00000301335		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000498643	ENST00000571650		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000498643	ENST00000382147		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-3CDS	ENST00000498643	ENST00000412517		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
intron-intron	ENST00000498643	ENST00000574274		TCGA	RV	LUAD	TCGA-55-8094-01A	YWHAE	chr17	1257505	-	SLC43A2	chr17	1489345	-
In-frame	ENST00000371711	ENST00000341197		TCGA	RV	LUAD	TCGA-75-6214-01A	B4GALT5	chr20	48330113	-	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000371711	ENST00000423191		TCGA	RV	LUAD	TCGA-75-6214-01A	B4GALT5	chr20	48330113	-	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000371711	ENST00000372999		TCGA	RV	LUAD	TCGA-75-6214-01A	B4GALT5	chr20	48330113	-	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000371711	ENST00000358131		TCGA	RV	LUAD	TCGA-75-6214-01A	B4GALT5	chr20	48330113	-	TOX2	chr20	42602007	+
5CDS-intron	ENST00000371711	ENST00000435864		TCGA	RV	LUAD	TCGA-75-6214-01A	B4GALT5	chr20	48330113	-	TOX2	chr20	42602007	+
5CDS-intron	ENST00000246533	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000246533	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
intron-intron	ENST00000589146	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
intron-intron	ENST00000589146	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000587718	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000587718	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
intron-intron	ENST00000590874	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
intron-intron	ENST00000590874	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000588815	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000588815	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
intron-intron	ENST00000588780	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
intron-intron	ENST00000588780	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6978-01A	CAPNS1	chr19	36641254	+	CHD1	chr5	98219587	-
Frame-shit	ENST00000345097	ENST00000555449		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000345097	ENST00000331299		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000345097	ENST00000557611		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000261302	ENST00000555449		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000261302	ENST00000331299		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000261302	ENST00000557611		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000557258	ENST00000555449		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000557258	ENST00000331299		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000557258	ENST00000557611		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000555353	ENST00000555449		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000555353	ENST00000331299		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000555353	ENST00000557611		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000555658	ENST00000555449		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000555658	ENST00000331299		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000555658	ENST00000557611		TCGA	RV	LUAD	TCGA-44-7669-01A	FOXN3	chr14	89656728	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000299293	ENST00000422156		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000299293	ENST00000540759		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000299293	ENST00000550465		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000299293	ENST00000354947		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000549921	ENST00000422156		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000549921	ENST00000540759		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000549921	ENST00000550465		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000549921	ENST00000354947		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000550389	ENST00000422156		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000550389	ENST00000540759		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000550389	ENST00000550465		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000550389	ENST00000354947		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000397997	ENST00000422156		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000397997	ENST00000540759		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000397997	ENST00000550465		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000397997	ENST00000354947		TCGA	RV	LUAD	TCGA-55-7907-01A	FRS2	chr12	69962876	+	PIP4K2C	chr12	57994107	+
In-frame	ENST00000397661	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000397661	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000397661	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000397661	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000397661	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000592199	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000592199	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000592199	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000592199	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000592199	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000587760	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000587760	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000587760	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000587760	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000587760	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000585575	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000585575	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000585575	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000585575	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000585575	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000360105	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000360105	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000360105	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000360105	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000360105	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000588228	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000588228	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000588228	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000588228	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000588228	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000587260	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000587260	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000587260	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000587260	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000587260	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000358552	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000358552	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000358552	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000358552	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
5CDS-intron	ENST00000358552	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
intron-3CDS	ENST00000588680	ENST00000222214		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
intron-3CDS	ENST00000588680	ENST00000591470		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
intron-3CDS	ENST00000588680	ENST00000457854		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
intron-intron	ENST00000588680	ENST00000422947		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
intron-intron	ENST00000588680	ENST00000588242		TCGA	RV	LUAD	TCGA-55-8506-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002930	+
In-frame	ENST00000397292	ENST00000513293		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
Frame-shit	ENST00000397292	ENST00000495827		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
5CDS-intron	ENST00000397292	ENST00000488436		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
In-frame	ENST00000520884	ENST00000513293		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
Frame-shit	ENST00000520884	ENST00000495827		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
5CDS-intron	ENST00000520884	ENST00000488436		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000520641	ENST00000513293		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
intron-3CDS	ENST00000520641	ENST00000495827		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
intron-intron	ENST00000520641	ENST00000488436		TCGA	RV	LUAD	TCGA-93-A4JQ-01A	PLAA	chr9	26946895	-	PTPLAD2	chr9	21029397	-
5CDS-5UTR	ENST00000361756	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000361756	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000361756	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000361756	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000361756	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000361756	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000533380	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000533380	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000533380	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000533380	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000533380	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000533380	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000393713	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000393713	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000393713	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000393713	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000393713	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000393713	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
3UTR-5UTR	ENST00000490867	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
3UTR-5UTR	ENST00000490867	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
3UTR-5UTR	ENST00000490867	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
3UTR-5UTR	ENST00000490867	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
3UTR-5UTR	ENST00000490867	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
3UTR-5UTR	ENST00000490867	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-5UTR	ENST00000545854	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-5UTR	ENST00000545854	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-5UTR	ENST00000545854	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-5UTR	ENST00000545854	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-5UTR	ENST00000545854	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-5UTR	ENST00000545854	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000530137	ENST00000456829		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000530137	ENST00000361352		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000530137	ENST00000449321		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000530137	ENST00000392748		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000530137	ENST00000360334		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5CDS-5UTR	ENST00000530137	ENST00000392744		TCGA	RV	LUAD	TCGA-38-4632-01A	RNF121	chr11	71640170	+	VWA5A	chr11	123988204	+
5UTR-intron	ENST00000543470	ENST00000485761		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5UTR-intron	ENST00000543470	ENST00000367036		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5UTR-intron	ENST00000543470	ENST00000310833		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5UTR-intron	ENST00000543470	ENST00000356522		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5UTR-5UTR	ENST00000543470	ENST00000537704		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366960	ENST00000485761		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366960	ENST00000367036		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366960	ENST00000310833		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366960	ENST00000356522		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-5UTR	ENST00000366960	ENST00000537704		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366959	ENST00000485761		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366959	ENST00000367036		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366959	ENST00000310833		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-intron	ENST00000366959	ENST00000356522		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
5CDS-5UTR	ENST00000366959	ENST00000537704		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000543354	ENST00000485761		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000543354	ENST00000367036		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000543354	ENST00000310833		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000543354	ENST00000356522		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-5UTR	ENST00000543354	ENST00000537704		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000490299	ENST00000485761		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000490299	ENST00000367036		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000490299	ENST00000310833		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-intron	ENST00000490299	ENST00000356522		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
intron-5UTR	ENST00000490299	ENST00000537704		TCGA	RV	LUAD	TCGA-50-5932-01A	RPS6KC1	chr1	213290752	+	CD34	chr1	208073348	-
In-frame	ENST00000361204	ENST00000401548		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
5CDS-intron	ENST00000361204	ENST00000540833		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
5CDS-intron	ENST00000361204	ENST00000400107		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
5CDS-5UTR	ENST00000361204	ENST00000300398		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
5CDS-5UTR	ENST00000361204	ENST00000540880		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
5CDS-intron	ENST00000361204	ENST00000476893		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
intron-3CDS	ENST00000491541	ENST00000401548		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
intron-intron	ENST00000491541	ENST00000540833		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
intron-intron	ENST00000491541	ENST00000400107		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
intron-5UTR	ENST00000491541	ENST00000300398		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
intron-5UTR	ENST00000491541	ENST00000540880		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
intron-intron	ENST00000491541	ENST00000476893		TCGA	RV	LUAD	TCGA-49-AARE-01A	SREBF2	chr22	42264796	+	MEI1	chr22	42166690	+
In-frame	ENST00000412704	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
5CDS-intron	ENST00000412704	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
In-frame	ENST00000376887	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
5CDS-intron	ENST00000376887	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
In-frame	ENST00000536256	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
5CDS-intron	ENST00000536256	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
In-frame	ENST00000431522	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
5CDS-intron	ENST00000431522	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
3UTR-3CDS	ENST00000538287	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
3UTR-intron	ENST00000538287	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
intron-3CDS	ENST00000474158	ENST00000360467		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
intron-intron	ENST00000474158	ENST00000462309		TCGA	RV	LUAD	TCGA-69-7979-01A	ABCC4	chr13	95822786	-	COL4A2	chr13	111077081	+
In-frame	ENST00000354775	ENST00000472647		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
In-frame	ENST00000354775	ENST00000367811		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
5CDS-intron	ENST00000354775	ENST00000469474		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
Frame-shit	ENST00000538148	ENST00000472647		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
Frame-shit	ENST00000538148	ENST00000367811		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
5CDS-intron	ENST00000538148	ENST00000469474		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
5UTR-3CDS	ENST00000461664	ENST00000472647		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
5UTR-3CDS	ENST00000461664	ENST00000367811		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
5UTR-intron	ENST00000461664	ENST00000469474		TCGA	RV	LUAD	TCGA-86-8673-01A	ALDH9A1	chr1	165651344	-	NME7	chr1	169206925	-
In-frame	ENST00000335016	ENST00000281154		TCGA	RV	LUAD	TCGA-55-1592-01A	BMP2K	chr4	79786874	+	SLC25A31	chr4	128694541	+
In-frame	ENST00000502871	ENST00000281154		TCGA	RV	LUAD	TCGA-55-1592-01A	BMP2K	chr4	79786874	+	SLC25A31	chr4	128694541	+
In-frame	ENST00000262812	ENST00000600490		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000262812	ENST00000262817		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000349893	ENST00000600490		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000349893	ENST00000262817		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000600932	ENST00000600490		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000600932	ENST00000262817		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000598969	ENST00000600490		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
intron-3CDS	ENST00000598969	ENST00000262817		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000351079	ENST00000600490		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000351079	ENST00000262817		TCGA	RV	LUAD	TCGA-55-6981-01A	COPE	chr19	19030032	-	TMEM59L	chr19	18724682	+
In-frame	ENST00000254624	ENST00000520356		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000254624	ENST00000520727		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000254624	ENST00000429442		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000254624	ENST00000377838		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000254624	ENST00000520214		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000254624	ENST00000523399		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
5CDS-5UTR	ENST00000254624	ENST00000517307		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000334503	ENST00000520356		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000334503	ENST00000520727		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000334503	ENST00000429442		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000334503	ENST00000377838		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000334503	ENST00000520214		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000334503	ENST00000523399		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
5CDS-5UTR	ENST00000334503	ENST00000517307		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000519656	ENST00000520356		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000519656	ENST00000520727		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000519656	ENST00000429442		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000519656	ENST00000377838		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000519656	ENST00000520214		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
In-frame	ENST00000519656	ENST00000523399		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
5CDS-5UTR	ENST00000519656	ENST00000517307		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-3CDS	ENST00000521940	ENST00000520356		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-3CDS	ENST00000521940	ENST00000520727		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-3CDS	ENST00000521940	ENST00000429442		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-3CDS	ENST00000521940	ENST00000377838		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-3CDS	ENST00000521940	ENST00000520214		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-3CDS	ENST00000521940	ENST00000523399		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
intron-5UTR	ENST00000521940	ENST00000517307		TCGA	RV	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132999949	+	ZFAT	chr8	135577664	-
Frame-shit	ENST00000296137	ENST00000446450		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5CDS-intron	ENST00000296137	ENST00000354956		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5CDS-intron	ENST00000296137	ENST00000354449		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5CDS-intron	ENST00000296137	ENST00000469654		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
In-frame	ENST00000535325	ENST00000446450		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5CDS-intron	ENST00000535325	ENST00000354956		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5CDS-intron	ENST00000535325	ENST00000354449		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5CDS-intron	ENST00000535325	ENST00000469654		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
intron-3CDS	ENST00000438446	ENST00000446450		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
intron-intron	ENST00000438446	ENST00000354956		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
intron-intron	ENST00000438446	ENST00000354449		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
intron-intron	ENST00000438446	ENST00000469654		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	FYCO1	chr3	46021197	-	ATG7	chr3	11421446	+
5UTR-3CDS	ENST00000368655	ENST00000368559		TCGA	RV	LUAD	TCGA-44-7660-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153982597	-
5UTR-3CDS	ENST00000368655	ENST00000368553		TCGA	RV	LUAD	TCGA-44-7660-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153982597	-
5UTR-3CDS	ENST00000368655	ENST00000271854		TCGA	RV	LUAD	TCGA-44-7660-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153982597	-
5CDS-intron	ENST00000296474	ENST00000415807		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000296474	ENST00000336824		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000296474	ENST00000416957		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000296474	ENST00000392699		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000296474	ENST00000421757		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000296474	ENST00000423424		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-3UTR	ENST00000296474	ENST00000476794		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000344206	ENST00000415807		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000344206	ENST00000336824		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000344206	ENST00000416957		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000344206	ENST00000392699		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000344206	ENST00000421757		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-intron	ENST00000344206	ENST00000423424		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
5CDS-3UTR	ENST00000344206	ENST00000476794		TCGA	RV	LUAD	TCGA-95-7039-01A	MST1R	chr3	49932600	-	FNDC3B	chr3	171904502	+
intron-intron	ENST00000394936	ENST00000354817		TCGA	RV	LUAD	TCGA-75-7027-01A	PSAP	chr10	73576307	-	FAR1	chr11	13744912	+
intron-intron	ENST00000394936	ENST00000527202		TCGA	RV	LUAD	TCGA-75-7027-01A	PSAP	chr10	73576307	-	FAR1	chr11	13744912	+
intron-intron	ENST00000394936	ENST00000532502		TCGA	RV	LUAD	TCGA-75-7027-01A	PSAP	chr10	73576307	-	FAR1	chr11	13744912	+
intron-intron	ENST00000394934	ENST00000354817		TCGA	RV	LUAD	TCGA-75-7027-01A	PSAP	chr10	73576307	-	FAR1	chr11	13744912	+
intron-intron	ENST00000394934	ENST00000527202		TCGA	RV	LUAD	TCGA-75-7027-01A	PSAP	chr10	73576307	-	FAR1	chr11	13744912	+
intron-intron	ENST00000394934	ENST00000532502		TCGA	RV	LUAD	TCGA-75-7027-01A	PSAP	chr10	73576307	-	FAR1	chr11	13744912	+
Frame-shit	ENST00000538962	ENST00000374287		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000538962	ENST00000374283		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000538962	ENST00000394777		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000538962	ENST00000394779		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000538962	ENST00000318737		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
Frame-shit	ENST00000309195	ENST00000374287		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000309195	ENST00000374283		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000309195	ENST00000394777		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000309195	ENST00000394779		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000309195	ENST00000318737		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
Frame-shit	ENST00000407693	ENST00000374287		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000407693	ENST00000374283		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000407693	ENST00000394777		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000407693	ENST00000394779		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5CDS-intron	ENST00000407693	ENST00000318737		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5UTR-3CDS	ENST00000238248	ENST00000374287		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5UTR-intron	ENST00000238248	ENST00000374283		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5UTR-intron	ENST00000238248	ENST00000394777		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5UTR-intron	ENST00000238248	ENST00000394779		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5UTR-intron	ENST00000238248	ENST00000318737		TCGA	RV	LUAD	TCGA-55-A48Y-01A	PTGR1	chr9	114355206	-	C9orf84	chr9	114456642	-
5UTR-3CDS	ENST00000346141	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000346141	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000346141	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-5UTR	ENST00000346141	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-intron	ENST00000346141	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000325752	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000325752	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000325752	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-5UTR	ENST00000325752	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-intron	ENST00000325752	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000340993	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000340993	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000340993	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-5UTR	ENST00000340993	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-intron	ENST00000340993	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000394239	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000394239	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000394239	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-5UTR	ENST00000394239	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-intron	ENST00000394239	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000592426	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000592426	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000592426	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-5UTR	ENST00000592426	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-intron	ENST00000592426	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000376094	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000376094	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-3CDS	ENST00000376094	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-5UTR	ENST00000376094	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
intron-intron	ENST00000376094	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000539018	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000539018	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000539018	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-5UTR	ENST00000539018	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-intron	ENST00000539018	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000591611	ENST00000443572		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000591611	ENST00000406116		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-3CDS	ENST00000591611	ENST00000225577		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-5UTR	ENST00000591611	ENST00000393021		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
5UTR-intron	ENST00000591611	ENST00000587061		TCGA	RV	LUAD	TCGA-69-7978-01A	TUBD1	chr17	57970058	-	RPS6KB1	chr17	57987923	+
Frame-shit	ENST00000378308	ENST00000377967		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000378308	ENST00000382899		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000378308	ENST00000536777		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000378308	ENST00000543216		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
5CDS-intron	ENST00000378308	ENST00000479423		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000324545	ENST00000377967		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000324545	ENST00000382899		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000324545	ENST00000536777		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
Frame-shit	ENST00000324545	ENST00000543216		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
5CDS-intron	ENST00000324545	ENST00000479423		TCGA	RV	LUAD	TCGA-86-7954-01A	USP9X	chrX	41031211	+	KDM6A	chrX	44870206	+
5UTR-3CDS	ENST00000216268	ENST00000309930		TCGA	RV	LUAD	TCGA-38-4628-01A	ZBED4	chr22	50247637	+	C7orf10	chr7	40277234	+
5UTR-3CDS	ENST00000216268	ENST00000401647		TCGA	RV	LUAD	TCGA-38-4628-01A	ZBED4	chr22	50247637	+	C7orf10	chr7	40277234	+
5UTR-3CDS	ENST00000216268	ENST00000335693		TCGA	RV	LUAD	TCGA-38-4628-01A	ZBED4	chr22	50247637	+	C7orf10	chr7	40277234	+
5UTR-intron	ENST00000216268	ENST00000464028		TCGA	RV	LUAD	TCGA-38-4628-01A	ZBED4	chr22	50247637	+	C7orf10	chr7	40277234	+
5UTR-intron	ENST00000216268	ENST00000540834		TCGA	RV	LUAD	TCGA-38-4628-01A	ZBED4	chr22	50247637	+	C7orf10	chr7	40277234	+
intron-3UTR	ENST00000470422	ENST00000539805		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
intron-5UTR	ENST00000470422	ENST00000480436		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
intron-5UTR	ENST00000470422	ENST00000337743		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
intron-intron	ENST00000470422	ENST00000544472		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000246043	ENST00000539805		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000246043	ENST00000480436		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000246043	ENST00000337743		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000246043	ENST00000544472		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000377813	ENST00000539805		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377813	ENST00000480436		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377813	ENST00000337743		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000377813	ENST00000544472		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000377807	ENST00000539805		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377807	ENST00000480436		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000377807	ENST00000337743		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000377807	ENST00000544472		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000360807	ENST00000539805		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000360807	ENST00000480436		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000360807	ENST00000337743		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000360807	ENST00000544472		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-3UTR	ENST00000455029	ENST00000539805		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000455029	ENST00000480436		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000455029	ENST00000337743		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-intron	ENST00000455029	ENST00000544472		TCGA	RV	LUAD	TCGA-91-6831-01A	RRBP1	chr20	17614105	-	TASP1	chr20	13398168	-
5CDS-5UTR	ENST00000265113	ENST00000303142		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC1A3	chr5	36608706	+	C20orf196	chr20	5753508	+
5CDS-5UTR	ENST00000265113	ENST00000378979		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC1A3	chr5	36608706	+	C20orf196	chr20	5753508	+
3UTR-5UTR	ENST00000506725	ENST00000303142		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC1A3	chr5	36608706	+	C20orf196	chr20	5753508	+
3UTR-5UTR	ENST00000506725	ENST00000378979		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC1A3	chr5	36608706	+	C20orf196	chr20	5753508	+
5CDS-5UTR	ENST00000381918	ENST00000303142		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC1A3	chr5	36608706	+	C20orf196	chr20	5753508	+
5CDS-5UTR	ENST00000381918	ENST00000378979		TCGA	RV	LUAD	TCGA-38-4630-01A	SLC1A3	chr5	36608706	+	C20orf196	chr20	5753508	+
Frame-shit	ENST00000535206	ENST00000472232		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000467389		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000379704		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
Frame-shit	ENST00000379731	ENST00000472232		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000467389		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000379704		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-3CDS	ENST00000541851	ENST00000472232		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000467389		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000379704		TCGA	RV	LUAD	TCGA-91-7771-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
In-frame	ENST00000377298	ENST00000377263		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000400904		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000537447		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000377258		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377298	ENST00000377256		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000361311	ENST00000377263		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000400904		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000537447		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000377258		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000361311	ENST00000377256		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
In-frame	ENST00000377288	ENST00000377263		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000400904		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000537447		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000377258		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000377288	ENST00000377256		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000377263		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000400904		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000537447		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000377258		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
intron-3CDS	ENST00000477264	ENST00000377256		TCGA	RV	LUAD	TCGA-55-8616-01A	CLSTN1	chr1	9809519	-	CTNNBIP1	chr1	9910834	-
Frame-shit	ENST00000511601	ENST00000451320		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
In-frame	ENST00000511601	ENST00000429148		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000511601	ENST00000353617		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000511601	ENST00000405727		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000511601	ENST00000356064		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
5CDS-intron	ENST00000511601	ENST00000511289		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000260008	ENST00000451320		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
In-frame	ENST00000260008	ENST00000429148		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000260008	ENST00000353617		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000260008	ENST00000405727		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000260008	ENST00000356064		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
5CDS-intron	ENST00000260008	ENST00000511289		TCGA	RV	LUAD	TCGA-80-5611-01A	FHDC1	chr4	153875471	+	ARFIP1	chr4	153831216	+
5CDS-3UTR	ENST00000325631	ENST00000399820		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-3UTR	ENST00000325631	ENST00000288634		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-intron	ENST00000325631	ENST00000506503		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-intron	ENST00000325631	ENST00000515631		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-3UTR	ENST00000413223	ENST00000399820		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-3UTR	ENST00000413223	ENST00000288634		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-intron	ENST00000413223	ENST00000506503		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-intron	ENST00000413223	ENST00000515631		TCGA	RV	LUAD	TCGA-62-A46V-01A	MARVELD2	chr5	68716358	+	WDR19	chr4	39287107	+
5CDS-5UTR	ENST00000337907	ENST00000234590		TCGA	RV	LUAD	TCGA-55-A48Y-01A	RERE	chr1	8525985	-	ENO1	chr1	8934976	-
5CDS-5UTR	ENST00000377464	ENST00000234590		TCGA	RV	LUAD	TCGA-55-A48Y-01A	RERE	chr1	8525985	-	ENO1	chr1	8934976	-
5CDS-5UTR	ENST00000400907	ENST00000234590		TCGA	RV	LUAD	TCGA-55-A48Y-01A	RERE	chr1	8525985	-	ENO1	chr1	8934976	-
5CDS-5UTR	ENST00000400908	ENST00000234590		TCGA	RV	LUAD	TCGA-55-A48Y-01A	RERE	chr1	8525985	-	ENO1	chr1	8934976	-
intron-5UTR	ENST00000476556	ENST00000234590		TCGA	RV	LUAD	TCGA-55-A48Y-01A	RERE	chr1	8525985	-	ENO1	chr1	8934976	-
intron-5UTR	ENST00000460659	ENST00000234590		TCGA	RV	LUAD	TCGA-55-A48Y-01A	RERE	chr1	8525985	-	ENO1	chr1	8934976	-
In-frame	ENST00000401642	ENST00000281038		TCGA	RV	LUAD	TCGA-86-8074-01A	SCFD2	chr4	54218765	-	NARS2	chr11	78180359	-
In-frame	ENST00000401642	ENST00000528850		TCGA	RV	LUAD	TCGA-86-8074-01A	SCFD2	chr4	54218765	-	NARS2	chr11	78180359	-
In-frame	ENST00000388940	ENST00000281038		TCGA	RV	LUAD	TCGA-86-8074-01A	SCFD2	chr4	54218765	-	NARS2	chr11	78180359	-
In-frame	ENST00000388940	ENST00000528850		TCGA	RV	LUAD	TCGA-86-8074-01A	SCFD2	chr4	54218765	-	NARS2	chr11	78180359	-
intron-3CDS	ENST00000585748	ENST00000539243		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-3CDS	ENST00000585748	ENST00000313093		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-3CDS	ENST00000585748	ENST00000536472		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-3CDS	ENST00000585748	ENST00000590214		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-3CDS	ENST00000585748	ENST00000586866		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-3CDS	ENST00000585748	ENST00000543365		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-intron	ENST00000585748	ENST00000592335		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-intron	ENST00000585748	ENST00000590577		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-intron	ENST00000585748	ENST00000591169		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
In-frame	ENST00000326873	ENST00000539243		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
In-frame	ENST00000326873	ENST00000313093		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
In-frame	ENST00000326873	ENST00000536472		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
In-frame	ENST00000326873	ENST00000590214		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
In-frame	ENST00000326873	ENST00000586866		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
In-frame	ENST00000326873	ENST00000543365		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
5CDS-intron	ENST00000326873	ENST00000592335		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
5CDS-intron	ENST00000326873	ENST00000590577		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
5CDS-intron	ENST00000326873	ENST00000591169		TCGA	RV	LUAD	TCGA-NJ-A4YF-01A	STK11	chr19	1222005	+	HMHA1	chr19	1080254	+
intron-3CDS	ENST00000530124	ENST00000358794		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000530124	ENST00000305218		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000530124	ENST00000538945		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000530124	ENST00000543847		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3UTR	ENST00000530124	ENST00000540501		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000257247	ENST00000358794		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000257247	ENST00000305218		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000257247	ENST00000538945		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000257247	ENST00000543847		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3UTR	ENST00000257247	ENST00000540501		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000525875	ENST00000358794		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000525875	ENST00000305218		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000525875	ENST00000538945		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3CDS	ENST00000525875	ENST00000543847		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
intron-3UTR	ENST00000525875	ENST00000540501		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000378024	ENST00000358794		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000378024	ENST00000305218		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000378024	ENST00000538945		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3CDS	ENST00000378024	ENST00000543847		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
5UTR-3UTR	ENST00000378024	ENST00000540501		TCGA	RV	LUAD	TCGA-97-7937-01A	AHNAK	chr11	62314132	-	STIP1	chr11	63960550	+
In-frame	ENST00000338458	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000338458	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000338458	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000338458	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000338458	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000338458	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000496106	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000496106	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000496106	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000496106	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000496106	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000496106	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5UTR-3CDS	ENST00000498517	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5UTR-3CDS	ENST00000498517	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5UTR-3CDS	ENST00000498517	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5UTR-intron	ENST00000498517	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5UTR-intron	ENST00000498517	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5UTR-intron	ENST00000498517	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000296315	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000296315	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000296315	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000296315	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000296315	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000296315	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000413728	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000413728	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000413728	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000413728	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000413728	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000413728	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000497267	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000497267	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000497267	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000497267	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000497267	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000497267	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000495373	ENST00000292246		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000495373	ENST00000350459		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000495373	ENST00000396091		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000495373	ENST00000414522		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000495373	ENST00000451430		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
5CDS-intron	ENST00000495373	ENST00000495772		TCGA	RV	LUAD	TCGA-35-4123-01A	ARHGEF3	chr3	56807737	-	ANO10	chr3	43474219	-
In-frame	ENST00000358691	ENST00000262138		TCGA	RV	LUAD	TCGA-78-7146-01A	HELZ	chr17	65116521	-	CACNG4	chr17	65026582	+
In-frame	ENST00000580168	ENST00000262138		TCGA	RV	LUAD	TCGA-78-7146-01A	HELZ	chr17	65116521	-	CACNG4	chr17	65026582	+
intron-3CDS	ENST00000580662	ENST00000262138		TCGA	RV	LUAD	TCGA-78-7146-01A	HELZ	chr17	65116521	-	CACNG4	chr17	65026582	+
intron-3CDS	ENST00000524482	ENST00000246747		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
intron-3CDS	ENST00000524482	ENST00000529384		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
intron-intron	ENST00000524482	ENST00000533729		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000534078	ENST00000246747		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000534078	ENST00000529384		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
5CDS-intron	ENST00000534078	ENST00000533729		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000526171	ENST00000246747		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000526171	ENST00000529384		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
5CDS-intron	ENST00000526171	ENST00000533729		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000279242	ENST00000246747		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000279242	ENST00000529384		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
5CDS-intron	ENST00000279242	ENST00000533729		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000531705	ENST00000246747		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000531705	ENST00000529384		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
5CDS-intron	ENST00000531705	ENST00000533729		TCGA	RV	LUAD	TCGA-49-AARQ-01A	MRPL49	chr11	64889896	+	ARL2	chr11	64787891	+
In-frame	ENST00000265965	ENST00000592179		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
In-frame	ENST00000265965	ENST00000322980		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
Frame-shit	ENST00000265965	ENST00000585908		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
In-frame	ENST00000265965	ENST00000284207		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
5CDS-intron	ENST00000265965	ENST00000586511		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000592179		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000322980		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000585908		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000284207		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-intron	ENST00000528200	ENST00000586511		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000592179		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000322980		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000585908		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000284207		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-intron	ENST00000532265	ENST00000586511		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000592179		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000322980		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000585908		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000284207		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-intron	ENST00000532212	ENST00000586511		TCGA	RV	LUAD	TCGA-73-4666-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
5CDS-3UTR	ENST00000252996	ENST00000371497		TCGA	RV	LUAD	TCGA-91-6831-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000252996	ENST00000603338		TCGA	RV	LUAD	TCGA-91-6831-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000252996	ENST00000329613		TCGA	RV	LUAD	TCGA-91-6831-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000609045	ENST00000371497		TCGA	RV	LUAD	TCGA-91-6831-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000609045	ENST00000603338		TCGA	RV	LUAD	TCGA-91-6831-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
intron-intron	ENST00000609045	ENST00000329613		TCGA	RV	LUAD	TCGA-91-6831-01A	TAF4	chr20	60572606	-	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000424789	ENST00000262013		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
Frame-shit	ENST00000424789	ENST00000505279		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
Frame-shit	ENST00000424789	ENST00000357122		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000424789	ENST00000509724		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000424789	ENST00000510283		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
Frame-shit	ENST00000389520	ENST00000262013		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
Frame-shit	ENST00000389520	ENST00000505279		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
Frame-shit	ENST00000389520	ENST00000357122		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000389520	ENST00000509724		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
5CDS-intron	ENST00000389520	ENST00000510283		TCGA	RV	LUAD	TCGA-83-5908-01A	TANC2	chr17	61086987	+	SPAG9	chr17	49157065	-
intron-3CDS	ENST00000511725	ENST00000354725		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
intron-intron	ENST00000511725	ENST00000467238		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
5UTR-3CDS	ENST00000253815	ENST00000354725		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
5UTR-intron	ENST00000253815	ENST00000467238		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
In-frame	ENST00000398733	ENST00000354725		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000398733	ENST00000467238		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000505548	ENST00000354725		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
intron-intron	ENST00000505548	ENST00000467238		TCGA	RV	LUAD	TCGA-95-7562-01A	UBE2D2	chr5	138941400	+	SND1	chr7	127714554	+
5UTR-3CDS	ENST00000368061	ENST00000313382		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369354		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369356		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000530740		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369359		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369351		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369349		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369347		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369348		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000524974		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000313431		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000529945		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000479408		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000493130		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000478649		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
5UTR-intron	ENST00000368061	ENST00000369345		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-3CDS	ENST00000483408	ENST00000313382		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369354		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369356		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000530740		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369359		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369351		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369349		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369347		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369348		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000524974		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000313431		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000529945		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000479408		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000493130		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000478649		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
intron-intron	ENST00000483408	ENST00000369345		TCGA	RV	LUAD	TCGA-78-7146-01A	VANGL2	chr1	160370659	+	PDE4DIP	chr1	145021167	-
3UTR-3CDS	ENST00000578312	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
3UTR-5UTR	ENST00000578312	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000262394	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000262394	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000579733	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000579733	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000583193	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000583193	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000581185	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000581185	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000427287	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000427287	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000348811	ENST00000269373		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000348811	ENST00000535965		TCGA	RV	LUAD	TCGA-44-A47B-01A	WSB1	chr17	25621461	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000324464	ENST00000269701		TCGA	RV	LUAD	TCGA-49-4486-01A	ADCK4	chr19	41201894	-	AKAP8	chr19	15469873	-
Frame-shit	ENST00000450541	ENST00000269701		TCGA	RV	LUAD	TCGA-49-4486-01A	ADCK4	chr19	41201894	-	AKAP8	chr19	15469873	-
In-frame	ENST00000243583	ENST00000269701		TCGA	RV	LUAD	TCGA-49-4486-01A	ADCK4	chr19	41201894	-	AKAP8	chr19	15469873	-
In-frame	ENST00000287394	ENST00000287387		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5CDS-5UTR	ENST00000287394	ENST00000523984		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000287394	ENST00000517609		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000287394	ENST00000523356		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5CDS-intron	ENST00000287394	ENST00000518125		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5UTR-3CDS	ENST00000521903	ENST00000287387		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5UTR-5UTR	ENST00000521903	ENST00000523984		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5UTR-3UTR	ENST00000521903	ENST00000517609		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5UTR-3UTR	ENST00000521903	ENST00000523356		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5UTR-intron	ENST00000521903	ENST00000518125		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
intron-3CDS	ENST00000534257	ENST00000287387		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
intron-5UTR	ENST00000534257	ENST00000523984		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
intron-3UTR	ENST00000534257	ENST00000517609		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
intron-3UTR	ENST00000534257	ENST00000523356		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
intron-intron	ENST00000534257	ENST00000518125		TCGA	RV	LUAD	TCGA-05-4422-01A	ATAD2	chr8	124392769	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000282570	ENST00000418066		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000282570	ENST00000409920		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000282570	ENST00000394295		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000282570	ENST00000536030		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-3UTR	ENST00000468386	ENST00000418066		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000468386	ENST00000409920		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000468386	ENST00000394295		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000468386	ENST00000536030		TCGA	RV	LUAD	TCGA-69-8255-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
In-frame	ENST00000261681	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000261681	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000261681	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000261681	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000261681	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000555925	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
In-frame	ENST00000555925	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000555925	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000555925	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000555925	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-intron	ENST00000554911	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-intron	ENST00000554911	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-intron	ENST00000554911	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
intron-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
Frame-shit	ENST00000556345	ENST00000315266		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
Frame-shit	ENST00000556345	ENST00000478722		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000556345	ENST00000459628		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000556345	ENST00000543237		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-intron	ENST00000556345	ENST00000305960		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	LUAD	TCGA-50-5946-01A	MPP5	chr14	67746254	+	GPHN	chr14	67635650	+
5CDS-5UTR	ENST00000264930	ENST00000361132		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SLC12A7	chr5	1111983	-	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000264930	ENST00000393371		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SLC12A7	chr5	1111983	-	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000264930	ENST00000522500		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SLC12A7	chr5	1111983	-	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000264930	ENST00000519883		TCGA	RV	LUAD	TCGA-95-A4VK-01A	SLC12A7	chr5	1111983	-	RASGEF1C	chr5	179565058	-
In-frame	ENST00000344293	ENST00000356708		TCGA	RV	LUAD	TCGA-53-7624-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7839010	+
5CDS-3UTR	ENST00000344293	ENST00000493053		TCGA	RV	LUAD	TCGA-53-7624-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7839010	+
5CDS-5UTR	ENST00000344293	ENST00000541227		TCGA	RV	LUAD	TCGA-53-7624-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7839010	+
5CDS-5UTR	ENST00000344293	ENST00000335698		TCGA	RV	LUAD	TCGA-53-7624-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7839010	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2656-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2666-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000379441	ENST00000604560		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000379441	ENST00000452142		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000379441	ENST00000267012		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000379441	ENST00000544402		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-intron	ENST00000379441	ENST00000603260		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000179765	ENST00000604560		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000179765	ENST00000452142		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000179765	ENST00000267012		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000179765	ENST00000544402		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-intron	ENST00000179765	ENST00000603260		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000551812	ENST00000604560		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000551812	ENST00000452142		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000551812	ENST00000267012		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000551812	ENST00000544402		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-intron	ENST00000551812	ENST00000603260		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
5UTR-3CDS	ENST00000549884	ENST00000604560		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
5UTR-3CDS	ENST00000549884	ENST00000452142		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
5UTR-3CDS	ENST00000549884	ENST00000267012		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
5UTR-3CDS	ENST00000549884	ENST00000544402		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
5UTR-intron	ENST00000549884	ENST00000603260		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000553222	ENST00000604560		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000553222	ENST00000452142		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000553222	ENST00000267012		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-3CDS	ENST00000553222	ENST00000544402		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
intron-intron	ENST00000553222	ENST00000603260		TCGA	RV	LUAD	TCGA-49-6745-01A	BAZ2A	chr12	57023909	-	BIN2	chr12	51686128	-
3UTR-intron	ENST00000379802	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7155-01A	DSP	chr6	7586805	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000379802	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7155-01A	DSP	chr6	7586805	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000379802	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7155-01A	DSP	chr6	7586805	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000418664	ENST00000367545		TCGA	RV	LUAD	TCGA-78-7155-01A	DSP	chr6	7586805	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000418664	ENST00000367526		TCGA	RV	LUAD	TCGA-78-7155-01A	DSP	chr6	7586805	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000418664	ENST00000480333		TCGA	RV	LUAD	TCGA-78-7155-01A	DSP	chr6	7586805	+	UTRN	chr6	144665237	+
In-frame	ENST00000378581	ENST00000450554		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000378581	ENST00000308924		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000378581	ENST00000590551		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000378578	ENST00000450554		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000378578	ENST00000308924		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000378578	ENST00000590551		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000432389	ENST00000450554		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000432389	ENST00000308924		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
In-frame	ENST00000432389	ENST00000590551		TCGA	RV	LUAD	TCGA-55-8094-01A	DYNLT3	chrX	37700281	-	U2AF2	chr19	56179873	+
5CDS-intron	ENST00000216181	ENST00000542515		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000216181	ENST00000279147		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000216181	ENST00000536870		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000216181	ENST00000535657		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000216181	ENST00000539414		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000216181	ENST00000542341		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000475726	ENST00000542515		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000475726	ENST00000279147		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000475726	ENST00000536870		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000475726	ENST00000535657		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000475726	ENST00000539414		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000475726	ENST00000542341		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000401701	ENST00000542515		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000401701	ENST00000279147		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000401701	ENST00000536870		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000401701	ENST00000535657		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000401701	ENST00000539414		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5CDS-intron	ENST00000401701	ENST00000542341		TCGA	RV	LUAD	TCGA-64-1678-01A	MYH9	chr22	36744949	-	ORAOV1	chr11	69488089	-
5UTR-5UTR	ENST00000341724	ENST00000373100		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000341724	ENST00000373092		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000341724	ENST00000373077		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000341724	ENST00000423407		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000341724	ENST00000341458		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000341724	ENST00000426287		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-intron	ENST00000341724	ENST00000485914		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000372004	ENST00000373100		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000372004	ENST00000373092		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000372004	ENST00000373077		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000372004	ENST00000423407		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000372004	ENST00000341458		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000372004	ENST00000426287		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-intron	ENST00000372004	ENST00000485914		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371998	ENST00000373100		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371998	ENST00000373092		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371998	ENST00000373077		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371998	ENST00000423407		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371998	ENST00000341458		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371998	ENST00000426287		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-intron	ENST00000371998	ENST00000485914		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371997	ENST00000373100		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371997	ENST00000373092		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371997	ENST00000373077		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371997	ENST00000423407		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371997	ENST00000341458		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-5UTR	ENST00000371997	ENST00000426287		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5UTR-intron	ENST00000371997	ENST00000485914		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-5UTR	ENST00000497292	ENST00000373100		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-5UTR	ENST00000497292	ENST00000373092		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-5UTR	ENST00000497292	ENST00000373077		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-5UTR	ENST00000497292	ENST00000423407		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-5UTR	ENST00000497292	ENST00000341458		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-5UTR	ENST00000497292	ENST00000426287		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
intron-intron	ENST00000497292	ENST00000485914		TCGA	RV	LUAD	TCGA-75-5146-01A	NCOA3	chr20	46212005	+	SGK2	chr20	42195113	+
5CDS-intron	ENST00000318561	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000318561	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000521315	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000521315	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
intron-intron	ENST00000437090	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
intron-intron	ENST00000437090	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000520605	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000520605	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
intron-intron	ENST00000522109	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
intron-intron	ENST00000522109	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000524255	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000524255	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
intron-intron	ENST00000522880	ENST00000284049		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
intron-intron	ENST00000522880	ENST00000511067		TCGA	RV	LUAD	TCGA-55-6971-01A	SFTPC	chr8	22021989	+	CHD1	chr5	98219587	-
5UTR-3CDS	ENST00000389960	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-3CDS	ENST00000389960	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-intron	ENST00000389960	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-3CDS	ENST00000316356	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-3CDS	ENST00000316356	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-intron	ENST00000316356	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000528231	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000528231	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000528231	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-3CDS	ENST00000527523	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-3CDS	ENST00000527523	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-intron	ENST00000527523	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000524452	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000524452	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000524452	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000359152	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000359152	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000359152	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000354566	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000354566	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000354566	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000525702	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000525702	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000525702	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000525423	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000525423	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000525423	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000529581	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000529581	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000529581	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000389958	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000389958	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000389958	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000533892	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000533892	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000533892	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000528566	ENST00000262593		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-3CDS	ENST00000528566	ENST00000395939		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
intron-intron	ENST00000528566	ENST00000491469		TCGA	RV	LUAD	TCGA-38-4632-01A	SYTL2	chr11	85521997	-	DOK5	chr20	53226927	+
5UTR-3UTR	ENST00000396029	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
5UTR-3UTR	ENST00000396029	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
5UTR-3UTR	ENST00000396032	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
5UTR-3UTR	ENST00000396032	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
intron-3UTR	ENST00000371602	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
intron-3UTR	ENST00000371602	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
intron-3UTR	ENST00000349014	ENST00000484427		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
intron-3UTR	ENST00000349014	ENST00000371764		TCGA	RV	LUAD	TCGA-78-7152-01A	ADNP	chr20	49547363	-	DDX27	chr20	47837989	+
In-frame	ENST00000257209	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000257209	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000257209	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
5CDS-intron	ENST00000257209	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000445677	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000445677	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000445677	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
5CDS-intron	ENST00000445677	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000590592	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000590592	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000590592	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
5CDS-intron	ENST00000590592	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000359247	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000359247	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
In-frame	ENST00000359247	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
5CDS-intron	ENST00000359247	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000591635	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000591635	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000591635	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-intron	ENST00000591635	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000592128	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000592128	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000592128	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-intron	ENST00000592128	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000587493	ENST00000400569		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000587493	ENST00000356443		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-3CDS	ENST00000587493	ENST00000261606		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
intron-intron	ENST00000587493	ENST00000582016		TCGA	RV	LUAD	TCGA-86-8075-01A	FHOD3	chr18	33952707	+	MYOM1	chr18	3102628	-
Frame-shit	ENST00000318388	ENST00000284224		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
Frame-shit	ENST00000318388	ENST00000581714		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
5CDS-intron	ENST00000318388	ENST00000580774		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
intron-3CDS	ENST00000497577	ENST00000284224		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
intron-3CDS	ENST00000497577	ENST00000581714		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
intron-intron	ENST00000497577	ENST00000580774		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
Frame-shit	ENST00000400033	ENST00000284224		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
Frame-shit	ENST00000400033	ENST00000581714		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
5CDS-intron	ENST00000400033	ENST00000580774		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
intron-3CDS	ENST00000465096	ENST00000284224		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
intron-3CDS	ENST00000465096	ENST00000581714		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
intron-intron	ENST00000465096	ENST00000580774		TCGA	RV	LUAD	TCGA-86-8075-01A	NDUFV2	chr18	9117901	+	CHST9	chr18	24524330	-
5UTR-intron	ENST00000445299	ENST00000491186		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
5UTR-intron	ENST00000445299	ENST00000325318		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
5UTR-intron	ENST00000323460	ENST00000491186		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
5UTR-intron	ENST00000323460	ENST00000325318		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
5UTR-intron	ENST00000419026	ENST00000491186		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
5UTR-intron	ENST00000419026	ENST00000325318		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
intron-intron	ENST00000489744	ENST00000491186		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
intron-intron	ENST00000489744	ENST00000325318		TCGA	RV	LUAD	TCGA-78-7147-01A	SENP5	chr3	196594944	+	TCTEX1D2	chr3	196033883	-
Frame-shit	ENST00000409792	ENST00000395443		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
Frame-shit	ENST00000409792	ENST00000357496		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
Frame-shit	ENST00000409792	ENST00000424300		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
5CDS-5UTR	ENST00000409792	ENST00000479449		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
intron-3CDS	ENST00000492397	ENST00000395443		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
intron-3CDS	ENST00000492397	ENST00000357496		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
intron-3CDS	ENST00000492397	ENST00000424300		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
intron-5UTR	ENST00000492397	ENST00000479449		TCGA	RV	LUAD	TCGA-55-A48Y-01A	SETD2	chr3	47205344	-	QRICH1	chr3	49070661	-
In-frame	ENST00000244050	ENST00000371419		TCGA	RV	LUAD	TCGA-91-6831-01A	SNAI1	chr20	48600888	+	PFDN4	chr20	52835558	+
5CDS-3UTR	ENST00000244050	ENST00000487129		TCGA	RV	LUAD	TCGA-91-6831-01A	SNAI1	chr20	48600888	+	PFDN4	chr20	52835558	+
5CDS-intron	ENST00000331925	ENST00000309364		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000359180		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000317589		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000355397		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000429027		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000539256		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000299275		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000538714		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000543806		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000424268		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000540972		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000331925	ENST00000510738		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000309364		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000359180		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000317589		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000355397		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000429027		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000539256		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000299275		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000538714		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000543806		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000424268		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000540972		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000573283	ENST00000510738		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000309364		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000359180		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000317589		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000355397		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000429027		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000539256		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000299275		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000538714		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000543806		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000424268		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000540972		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575842	ENST00000510738		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000309364		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000359180		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000317589		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000355397		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000429027		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000539256		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000299275		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000538714		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000543806		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000424268		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000540972		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000575087	ENST00000510738		TCGA	RV	LUAD	TCGA-73-4666-01A	ACTG1	chr17	79476999	-	PLEKHA5	chr12	19441012	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-6147-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000415708	ENST00000457167		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000415708	ENST00000426588		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000415708	ENST00000316603		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
5CDS-intron	ENST00000415708	ENST00000589547		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000428395	ENST00000457167		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000428395	ENST00000426588		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000428395	ENST00000316603		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
5CDS-intron	ENST00000428395	ENST00000589547		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000241502	ENST00000457167		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000241502	ENST00000426588		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000241502	ENST00000316603		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
5CDS-intron	ENST00000241502	ENST00000589547		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000424384	ENST00000457167		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000424384	ENST00000426588		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000424384	ENST00000316603		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
5CDS-intron	ENST00000424384	ENST00000589547		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
3UTR-3CDS	ENST00000492360	ENST00000457167		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
3UTR-3CDS	ENST00000492360	ENST00000426588		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
3UTR-3CDS	ENST00000492360	ENST00000316603		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
3UTR-intron	ENST00000492360	ENST00000589547		TCGA	RV	LUAD	TCGA-93-8067-01A	FYTTD1	chr3	197505335	+	DNAJC7	chr17	40146962	-
In-frame	ENST00000341653	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000341653	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000341653	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000341653	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000358402	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000358402	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000358402	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000358402	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-3CDS	ENST00000555932	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-5UTR	ENST00000555932	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-intron	ENST00000555932	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-intron	ENST00000555932	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000284165	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000284165	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000284165	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000284165	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000358664	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000358664	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000358664	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000358664	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-3CDS	ENST00000555419	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-5UTR	ENST00000555419	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-intron	ENST00000555419	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
intron-intron	ENST00000555419	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5UTR-3CDS	ENST00000557277	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5UTR-5UTR	ENST00000557277	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5UTR-intron	ENST00000557277	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5UTR-intron	ENST00000557277	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000556979	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000556979	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000556979	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000556979	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000555667	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000555667	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000555667	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000555667	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000557746	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000557746	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000557746	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000557746	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000556443	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000556443	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000556443	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000556443	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
In-frame	ENST00000246163	ENST00000535814		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000246163	ENST00000374902		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000246163	ENST00000477648		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5CDS-intron	ENST00000246163	ENST00000537512		TCGA	RV	LUAD	TCGA-86-7953-01A	MAX	chr14	65560426	-	TEX10	chr9	103111654	-
5UTR-3CDS	ENST00000254066	ENST00000209728		TCGA	RV	LUAD	TCGA-95-7948-01A	RARA	chr17	38465538	+	CDC6	chr17	38457080	+
intron-3CDS	ENST00000394089	ENST00000209728		TCGA	RV	LUAD	TCGA-95-7948-01A	RARA	chr17	38465538	+	CDC6	chr17	38457080	+
intron-3CDS	ENST00000425707	ENST00000209728		TCGA	RV	LUAD	TCGA-95-7948-01A	RARA	chr17	38465538	+	CDC6	chr17	38457080	+
intron-3CDS	ENST00000394086	ENST00000209728		TCGA	RV	LUAD	TCGA-95-7948-01A	RARA	chr17	38465538	+	CDC6	chr17	38457080	+
intron-3CDS	ENST00000394081	ENST00000209728		TCGA	RV	LUAD	TCGA-95-7948-01A	RARA	chr17	38465538	+	CDC6	chr17	38457080	+
intron-3CDS	ENST00000420042	ENST00000209728		TCGA	RV	LUAD	TCGA-95-7948-01A	RARA	chr17	38465538	+	CDC6	chr17	38457080	+
intron-5UTR	ENST00000410075	ENST00000426997		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
intron-5UTR	ENST00000410075	ENST00000432605		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
intron-5UTR	ENST00000377802	ENST00000426997		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
intron-5UTR	ENST00000377802	ENST00000432605		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000355812	ENST00000426997		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000355812	ENST00000432605		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000409544	ENST00000426997		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000409544	ENST00000432605		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000264447	ENST00000426997		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000264447	ENST00000432605		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000409407	ENST00000426997		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
5CDS-5UTR	ENST00000409407	ENST00000432605		TCGA	RV	LUAD	TCGA-69-7979-01A	ZNF638	chr2	71645769	+	C2orf74	chr2	61389977	+
Frame-shit	ENST00000331366	ENST00000383699		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000331366	ENST00000407528		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
Frame-shit	ENST00000331366	ENST00000405615		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
5CDS-intron	ENST00000331366	ENST00000485126		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000538596	ENST00000383699		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000538596	ENST00000407528		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000538596	ENST00000405615		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-intron	ENST00000538596	ENST00000485126		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000546603	ENST00000383699		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000546603	ENST00000407528		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000546603	ENST00000405615		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-intron	ENST00000546603	ENST00000485126		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000360449	ENST00000383699		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000360449	ENST00000407528		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000360449	ENST00000405615		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-intron	ENST00000360449	ENST00000485126		TCGA	RV	LUAD	TCGA-44-7670-01A	CPNE8	chr12	39299239	-	CADM2	chr3	85851197	+
intron-3CDS	ENST00000542515	ENST00000281038		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
intron-5UTR	ENST00000542515	ENST00000528850		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
In-frame	ENST00000279147	ENST00000281038		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000279147	ENST00000528850		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
intron-3CDS	ENST00000536870	ENST00000281038		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
intron-5UTR	ENST00000536870	ENST00000528850		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
In-frame	ENST00000535657	ENST00000281038		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000535657	ENST00000528850		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
In-frame	ENST00000539414	ENST00000281038		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000539414	ENST00000528850		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
In-frame	ENST00000542341	ENST00000281038		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
5CDS-5UTR	ENST00000542341	ENST00000528850		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	ORAOV1	chr11	69487984	-	NARS2	chr11	78282489	-
intron-3CDS	ENST00000254066	ENST00000333461		TCGA	RV	LUAD	TCGA-55-1592-01A	RARA	chr17	38474700	+	STAC2	chr17	37374426	-
5UTR-3CDS	ENST00000394089	ENST00000333461		TCGA	RV	LUAD	TCGA-55-1592-01A	RARA	chr17	38474700	+	STAC2	chr17	37374426	-
5UTR-3CDS	ENST00000425707	ENST00000333461		TCGA	RV	LUAD	TCGA-55-1592-01A	RARA	chr17	38474700	+	STAC2	chr17	37374426	-
intron-3CDS	ENST00000394086	ENST00000333461		TCGA	RV	LUAD	TCGA-55-1592-01A	RARA	chr17	38474700	+	STAC2	chr17	37374426	-
intron-3CDS	ENST00000394081	ENST00000333461		TCGA	RV	LUAD	TCGA-55-1592-01A	RARA	chr17	38474700	+	STAC2	chr17	37374426	-
intron-3CDS	ENST00000420042	ENST00000333461		TCGA	RV	LUAD	TCGA-55-1592-01A	RARA	chr17	38474700	+	STAC2	chr17	37374426	-
Frame-shit	ENST00000393446	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
Frame-shit	ENST00000265437	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
Frame-shit	ENST00000393451	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
Frame-shit	ENST00000393449	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
Frame-shit	ENST00000323984	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000432298	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000422922	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000487459	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000393443	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000393447	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000393444	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
intron-3CDS	ENST00000465133	ENST00000284629		TCGA	RV	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117025863	-
Frame-shit	ENST00000344293	ENST00000376980		TCGA	RV	LUAD	TCGA-05-4420-01A	TAF3	chr10	7860838	+	DNAJC1	chr10	22095028	-
5CDS-intron	ENST00000344293	ENST00000376946		TCGA	RV	LUAD	TCGA-05-4420-01A	TAF3	chr10	7860838	+	DNAJC1	chr10	22095028	-
5CDS-5UTR	ENST00000344293	ENST00000483085		TCGA	RV	LUAD	TCGA-05-4420-01A	TAF3	chr10	7860838	+	DNAJC1	chr10	22095028	-
In-frame	ENST00000424789	ENST00000598494		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000424789	ENST00000600229		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000424789	ENST00000356762		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000424789	ENST00000308243		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000598494		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000600229		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000356762		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000308243		TCGA	RV	LUAD	TCGA-50-5946-02A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000420843	ENST00000336898		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000376282		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000529095		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000526177		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000533784		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000529721		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000533805		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000443276		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
In-frame	ENST00000393505	ENST00000336898		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000376282		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000529095		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000526177		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000533784		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000529721		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000533805		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000443276		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
In-frame	ENST00000360025	ENST00000336898		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000376282		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000529095		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000526177		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000533784		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000529721		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000533805		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000443276		TCGA	RV	LUAD	TCGA-MP-A4TC-01A	ARRB1	chr11	74993006	-	GDPD5	chr11	75173934	-
Frame-shit	ENST00000335183	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
5CDS-5UTR	ENST00000335183	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
Frame-shit	ENST00000543789	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
5CDS-5UTR	ENST00000543789	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
intron-3CDS	ENST00000442975	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
intron-5UTR	ENST00000442975	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
Frame-shit	ENST00000458126	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
5CDS-5UTR	ENST00000458126	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
Frame-shit	ENST00000556102	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
5CDS-5UTR	ENST00000556102	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
Frame-shit	ENST00000541304	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
5CDS-5UTR	ENST00000541304	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
3UTR-3CDS	ENST00000556305	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
3UTR-5UTR	ENST00000556305	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
intron-3CDS	ENST00000395577	ENST00000518529		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
intron-5UTR	ENST00000395577	ENST00000518987		TCGA	RV	LUAD	TCGA-86-A4D0-01A	CDKN3	chr14	54868297	+	SFTA3	chr14	36960496	-
Frame-shit	ENST00000265689	ENST00000225893		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000265689	ENST00000561193		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000265689	ENST00000560016		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000265689	ENST00000427275		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
intron-3CDS	ENST00000533728	ENST00000225893		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
intron-3CDS	ENST00000533728	ENST00000561193		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
intron-3CDS	ENST00000533728	ENST00000560016		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
intron-3CDS	ENST00000533728	ENST00000427275		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000356135	ENST00000225893		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000356135	ENST00000561193		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000356135	ENST00000560016		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
Frame-shit	ENST00000356135	ENST00000427275		TCGA	RV	LUAD	TCGA-97-A4M3-01A	CHKA	chr11	67842184	-	HNF1B	chr17	36047395	-
In-frame	ENST00000272638	ENST00000409478		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
In-frame	ENST00000272638	ENST00000329971		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
In-frame	ENST00000272638	ENST00000264160		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
In-frame	ENST00000272638	ENST00000410054		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
In-frame	ENST00000272638	ENST00000409606		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
5CDS-intron	ENST00000272638	ENST00000443537		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
intron-3CDS	ENST00000490163	ENST00000409478		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
intron-3CDS	ENST00000490163	ENST00000329971		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
intron-3CDS	ENST00000490163	ENST00000264160		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
intron-3CDS	ENST00000490163	ENST00000410054		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
intron-3CDS	ENST00000490163	ENST00000409606		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
intron-intron	ENST00000490163	ENST00000443537		TCGA	RV	LUAD	TCGA-55-7576-01A	UBXN4	chr2	136505939	+	R3HDM1	chr2	136467003	+
Frame-shit	ENST00000358849	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000358849	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000358849	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000358849	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000358849	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
In-frame	ENST00000542328	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
In-frame	ENST00000542328	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000542328	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000542328	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000542328	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000297504	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000297504	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000297504	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000297504	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000297504	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000356058	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000356058	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000356058	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000356058	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000356058	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000498578	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000498578	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000498578	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000498578	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000498578	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477719	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477719	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477719	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477719	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477719	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477092	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
Frame-shit	ENST00000477092	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477092	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477092	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000477092	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-3CDS	ENST00000493338	ENST00000297494		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-3CDS	ENST00000493338	ENST00000461406		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-intron	ENST00000493338	ENST00000484524		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-intron	ENST00000493338	ENST00000467517		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
intron-intron	ENST00000493338	ENST00000477227		TCGA	RV	LUAD	TCGA-MP-A4TA-01A	ABCB8	chr7	150725697	+	NOS3	chr7	150706018	+
5CDS-intron	ENST00000529681	ENST00000371754		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000529681	ENST00000469991		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529681	ENST00000371752		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000529681	ENST00000396105		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000447027	ENST00000371754		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000447027	ENST00000469991		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000447027	ENST00000371752		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000447027	ENST00000396105		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000531082	ENST00000371754		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000531082	ENST00000469991		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000531082	ENST00000371752		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000531082	ENST00000396105		TCGA	RV	LUAD	TCGA-55-6543-01A	MUC5B	chr11	1283402	+	ZNFX1	chr20	47863418	-
Frame-shit	ENST00000329399	ENST00000371227		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371249		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000306402		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000353505		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371246		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000347291		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000393949		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371247		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000607232		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371245		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000361941		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000277982		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000354106		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371239		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
Frame-shit	ENST00000329399	ENST00000371241		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
5CDS-intron	ENST00000329399	ENST00000474353		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371227		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371249		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000306402		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000353505		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371246		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000347291		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000393949		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371247		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000607232		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371245		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000361941		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000277982		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000354106		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371239		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000477757	ENST00000371241		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-intron	ENST00000477757	ENST00000474353		TCGA	RV	LUAD	TCGA-69-7978-01A	PDLIM1	chr10	97031390	-	SORBS1	chr10	97081778	-
intron-3CDS	ENST00000401695	ENST00000308724		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000401695	ENST00000397120		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
intron-intron	ENST00000401695	ENST00000556277		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
In-frame	ENST00000407193	ENST00000308724		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000407193	ENST00000397120		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000407193	ENST00000556277		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
Frame-shit	ENST00000312037	ENST00000308724		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000312037	ENST00000397120		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000312037	ENST00000556277		TCGA	RV	LUAD	TCGA-73-4666-01A	RPS14	chr5	149823794	-	AP1G2	chr14	24037279	-
5CDS-5UTR	ENST00000252699	ENST00000592694		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000337679		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000392124		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000339413		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000592246		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000329420		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000591784		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000591755		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000252699	ENST00000587361		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000592694		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000337679		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000392124		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000339413		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000592246		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000329420		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000591784		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000591755		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000424234	ENST00000587361		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000592694		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000337679		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000392124		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000339413		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000592246		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000329420		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000591784		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000591755		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
5CDS-5UTR	ENST00000390009	ENST00000587361		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000592694		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000337679		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000392124		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000339413		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000592246		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000329420		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000591784		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000591755		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000497637	ENST00000587361		TCGA	RV	LUAD	TCGA-55-A4DF-01A	ACTN4	chr19	39138547	+	YIF1B	chr19	38800283	-
In-frame	ENST00000308448	ENST00000371947		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
In-frame	ENST00000308448	ENST00000437752		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
In-frame	ENST00000308448	ENST00000331772		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000308448	ENST00000466945		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
Frame-shit	ENST00000328142	ENST00000371947		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
Frame-shit	ENST00000328142	ENST00000437752		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
Frame-shit	ENST00000328142	ENST00000331772		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000328142	ENST00000466945		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
intron-3CDS	ENST00000400215	ENST00000371947		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
intron-3CDS	ENST00000400215	ENST00000437752		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
intron-3CDS	ENST00000400215	ENST00000331772		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
intron-5UTR	ENST00000400215	ENST00000466945		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
In-frame	ENST00000541004	ENST00000371947		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
In-frame	ENST00000541004	ENST00000437752		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
In-frame	ENST00000541004	ENST00000331772		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5CDS-5UTR	ENST00000541004	ENST00000466945		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5UTR-3CDS	ENST00000495903	ENST00000371947		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5UTR-3CDS	ENST00000495903	ENST00000437752		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5UTR-3CDS	ENST00000495903	ENST00000331772		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
5UTR-5UTR	ENST00000495903	ENST00000466945		TCGA	RV	LUAD	TCGA-55-A48Y-01A	ATAD1	chr10	89574195	-	RNLS	chr10	90122482	-
In-frame	ENST00000394997	ENST00000332981		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000394997	ENST00000555082		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000394997	ENST00000556245		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000337138	ENST00000332981		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000337138	ENST00000555082		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000337138	ENST00000556245		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000323441	ENST00000332981		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000323441	ENST00000555082		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000323441	ENST00000556245		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000557538	ENST00000332981		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000557538	ENST00000555082		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000557538	ENST00000556245		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000539097	ENST00000332981		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
In-frame	ENST00000539097	ENST00000555082		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000539097	ENST00000556245		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000557206	ENST00000332981		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000557206	ENST00000555082		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
intron-intron	ENST00000557206	ENST00000556245		TCGA	RV	LUAD	TCGA-44-2668-01A	HIF1A	chr14	62207906	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000368395	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000368395	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000368395	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
In-frame	ENST00000338684	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000338684	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000338684	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000438413	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000438413	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000438413	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000457295	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000457295	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000457295	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000462215	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000462215	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000462215	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368392	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368392	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368392	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368393	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368393	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368393	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368390	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368390	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368390	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368396	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368396	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368396	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000343256	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000343256	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000343256	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368398	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368398	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368398	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000368389	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368389	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000368389	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000342482	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000342482	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000342482	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000337604	ENST00000263593		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000337604	ENST00000545756		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-intron	ENST00000337604	ENST00000525730		TCGA	RV	LUAD	TCGA-44-6776-01A	MUC1	chr1	155158302	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000376788		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000546215		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404621	ENST00000376788		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404621	ENST00000546215		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404121	ENST00000376788		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000404121	ENST00000546215		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000356219	ENST00000376788		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000356219	ENST00000546215		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000397355	ENST00000376788		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000397355	ENST00000546215		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000429285	ENST00000376788		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000429285	ENST00000546215		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	LUAD	TCGA-78-7152-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000413852	ENST00000442092		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000413852	ENST00000266022		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000413852	ENST00000443081		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-intron	ENST00000413852	ENST00000539992		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-3UTR	ENST00000413852	ENST00000441115		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000413852	ENST00000422955		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-intron	ENST00000413852	ENST00000421682		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000442092		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000266022		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000443081		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000002829	ENST00000539992		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000002829	ENST00000441115		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000422955		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000002829	ENST00000421682		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000434342	ENST00000442092		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000434342	ENST00000266022		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000434342	ENST00000443081		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-intron	ENST00000434342	ENST00000539992		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-3UTR	ENST00000434342	ENST00000441115		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-5UTR	ENST00000434342	ENST00000422955		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-intron	ENST00000434342	ENST00000421682		TCGA	RV	LUAD	TCGA-55-6969-01A	SEMA3F	chr3	50212621	+	RBM6	chr3	50085678	+
intron-3CDS	ENST00000535916	ENST00000370314		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
intron-3CDS	ENST00000535916	ENST00000535043		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
intron-intron	ENST00000535916	ENST00000497894		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000286428	ENST00000370314		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000286428	ENST00000535043		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000286428	ENST00000497894		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
intron-3CDS	ENST00000459836	ENST00000370314		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
intron-3CDS	ENST00000459836	ENST00000535043		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
intron-intron	ENST00000459836	ENST00000497894		TCGA	RV	LUAD	TCGA-55-6712-01A	VBP1	chrX	154444852	+	GABRA3	chrX	151393317	-
In-frame	ENST00000607838	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
intron-3CDS	ENST00000591724	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
In-frame	ENST00000332065	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
In-frame	ENST00000589210	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
In-frame	ENST00000335146	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
In-frame	ENST00000467929	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
In-frame	ENST00000405575	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
In-frame	ENST00000411744	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
intron-3CDS	ENST00000406660	ENST00000322957		TCGA	RV	LUAD	TCGA-86-8673-01A	EXOC7	chr17	74093877	-	FOXJ1	chr17	74134201	-
Frame-shit	ENST00000312865	ENST00000291707		TCGA	RV	LUAD	TCGA-55-8620-01A	MED25	chr19	50322553	+	SIGLEC12	chr19	51995083	-
Frame-shit	ENST00000312865	ENST00000598614		TCGA	RV	LUAD	TCGA-55-8620-01A	MED25	chr19	50322553	+	SIGLEC12	chr19	51995083	-
intron-3CDS	ENST00000538643	ENST00000291707		TCGA	RV	LUAD	TCGA-55-8620-01A	MED25	chr19	50322553	+	SIGLEC12	chr19	51995083	-
intron-3CDS	ENST00000538643	ENST00000598614		TCGA	RV	LUAD	TCGA-55-8620-01A	MED25	chr19	50322553	+	SIGLEC12	chr19	51995083	-
In-frame	ENST00000449985	ENST00000431639		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000449985	ENST00000316024		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000449985	ENST00000457584		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000449985	ENST00000396463		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000449985	ENST00000534050		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000532998	ENST00000431639		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000532998	ENST00000316024		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000532998	ENST00000457584		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000532998	ENST00000396463		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000532998	ENST00000534050		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000437139	ENST00000431639		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000437139	ENST00000316024		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000437139	ENST00000457584		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000437139	ENST00000396463		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000437139	ENST00000534050		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000533070	ENST00000431639		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000533070	ENST00000316024		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000533070	ENST00000457584		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000533070	ENST00000396463		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000533070	ENST00000534050		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000316425	ENST00000431639		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000316425	ENST00000316024		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000316425	ENST00000457584		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000316425	ENST00000396463		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000316425	ENST00000534050		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000431792	ENST00000431639		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000431792	ENST00000316024		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000431792	ENST00000457584		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000431792	ENST00000396463		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
In-frame	ENST00000431792	ENST00000534050		TCGA	RV	LUAD	TCGA-50-6673-01A	TMEM107	chr17	8079518	-	WRAP53	chr17	7604059	+
Frame-shit	ENST00000338458	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
In-frame	ENST00000338458	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
Frame-shit	ENST00000496106	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
In-frame	ENST00000496106	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
5UTR-3CDS	ENST00000498517	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
5UTR-3CDS	ENST00000498517	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000296315	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000296315	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000413728	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000413728	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000497267	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000497267	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000495373	ENST00000371175		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
intron-3CDS	ENST00000495373	ENST00000229810		TCGA	RV	LUAD	TCGA-86-7953-01A	ARHGEF3	chr3	56916320	-	RHAG	chr6	49587075	-
5UTR-3CDS	ENST00000419152	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000419152	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000532400	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000532400	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000532741	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000532741	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000317198	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000317198	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000526838	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000526838	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000442189	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000442189	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000528610	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000528610	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000423316	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000423316	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000395119	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000395119	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000529272	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000529272	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000531621	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000531621	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000524624	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000524624	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000531770	ENST00000529064		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
5UTR-3CDS	ENST00000531770	ENST00000425753		TCGA	RV	LUAD	TCGA-53-7624-01A	EEF1D	chr8	144679518	-	TSTA3	chr8	144697085	-
intron-3CDS	ENST00000372978	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000372978	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000372978	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000372978	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000372978	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000372978	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000494547	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000494547	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000494547	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000494547	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000494547	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000494547	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000456846	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000456846	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000456846	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000456846	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000456846	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000456846	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372982	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372982	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372982	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372982	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372982	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372982	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000472818	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000472818	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000472818	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000472818	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000472818	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000472818	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372977	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372977	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372977	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372977	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372977	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000372977	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482926	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482926	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482926	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482926	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482926	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482926	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000465926	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000465926	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000465926	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000465926	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000465926	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000465926	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482432	ENST00000507853		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482432	ENST00000335847		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482432	ENST00000329411		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482432	ENST00000355791		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482432	ENST00000505118		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
intron-3CDS	ENST00000482432	ENST00000536021		TCGA	RV	LUAD	TCGA-91-6840-01A	TAF8	chr6	42036345	+	CRISP1	chr6	49819842	-
In-frame	ENST00000321105	ENST00000354329		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000321105	ENST00000529578		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000321105	ENST00000533112		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000321105	ENST00000531253		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000321105	ENST00000527372		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5UTR-3CDS	ENST00000540524	ENST00000354329		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5UTR-intron	ENST00000540524	ENST00000529578		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5UTR-intron	ENST00000540524	ENST00000533112		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5UTR-intron	ENST00000540524	ENST00000531253		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5UTR-intron	ENST00000540524	ENST00000527372		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
Frame-shit	ENST00000542570	ENST00000354329		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000542570	ENST00000529578		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000542570	ENST00000533112		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000542570	ENST00000531253		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
5CDS-intron	ENST00000542570	ENST00000527372		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
intron-3CDS	ENST00000582230	ENST00000354329		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
intron-intron	ENST00000582230	ENST00000529578		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
intron-intron	ENST00000582230	ENST00000533112		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
intron-intron	ENST00000582230	ENST00000531253		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
intron-intron	ENST00000582230	ENST00000527372		TCGA	RV	LUAD	TCGA-38-4630-01A	TOP3A	chr17	18202873	-	MYO18A	chr17	27430682	-
In-frame	ENST00000281419	ENST00000305997		TCGA	RV	LUAD	TCGA-49-AAR9-01A	ASAP2	chr2	9437574	+	MBOAT2	chr2	9098771	-
5CDS-5UTR	ENST00000281419	ENST00000486484		TCGA	RV	LUAD	TCGA-49-AAR9-01A	ASAP2	chr2	9437574	+	MBOAT2	chr2	9098771	-
In-frame	ENST00000315273	ENST00000305997		TCGA	RV	LUAD	TCGA-49-AAR9-01A	ASAP2	chr2	9437574	+	MBOAT2	chr2	9098771	-
5CDS-5UTR	ENST00000315273	ENST00000486484		TCGA	RV	LUAD	TCGA-49-AAR9-01A	ASAP2	chr2	9437574	+	MBOAT2	chr2	9098771	-
intron-3CDS	ENST00000491413	ENST00000305997		TCGA	RV	LUAD	TCGA-49-AAR9-01A	ASAP2	chr2	9437574	+	MBOAT2	chr2	9098771	-
intron-5UTR	ENST00000491413	ENST00000486484		TCGA	RV	LUAD	TCGA-49-AAR9-01A	ASAP2	chr2	9437574	+	MBOAT2	chr2	9098771	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-5645-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000318522	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
In-frame	ENST00000402711	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000482660	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000453191	ENST00000389048		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000431873		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000498037		TCGA	RV	LUAD	TCGA-67-6215-01A	EML4	chr2	42491871	+	ALK	chr2	29446394	-
5UTR-3CDS	ENST00000303924	ENST00000414222		TCGA	RV	LUAD	TCGA-55-8089-01A	HAS2	chr8	122653093	-	HHLA1	chr8	133112381	-
5UTR-3CDS	ENST00000303924	ENST00000434736		TCGA	RV	LUAD	TCGA-55-8089-01A	HAS2	chr8	122653093	-	HHLA1	chr8	133112381	-
Frame-shit	ENST00000372189	ENST00000334270		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
5CDS-5UTR	ENST00000372189	ENST00000461970		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
Frame-shit	ENST00000372195	ENST00000334270		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
5CDS-5UTR	ENST00000372195	ENST00000461970		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
Frame-shit	ENST00000372190	ENST00000334270		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
5CDS-5UTR	ENST00000372190	ENST00000461970		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
5UTR-3CDS	ENST00000481260	ENST00000334270		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
5UTR-5UTR	ENST00000481260	ENST00000461970		TCGA	RV	LUAD	TCGA-4B-A93V-01A	RAPGEF1	chr9	134514022	-	TTF1	chr9	135251555	-
In-frame	ENST00000312962	ENST00000356392		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000312962	ENST00000591179		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000312962	ENST00000545100		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000312962	ENST00000586836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000361821	ENST00000356392		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000361821	ENST00000591179		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000361821	ENST00000545100		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
In-frame	ENST00000361821	ENST00000586836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
intron-3CDS	ENST00000537964	ENST00000356392		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
intron-3CDS	ENST00000537964	ENST00000591179		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
intron-3CDS	ENST00000537964	ENST00000545100		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
intron-3CDS	ENST00000537964	ENST00000586836		TCGA	RV	LUAD	TCGA-MP-A5C7-01A	KRI1	chr19	10670035	-	CCDC151	chr19	11534698	-
Frame-shit	ENST00000424085	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000257075	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000373747	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373747	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373747	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373747	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000426105	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000426105	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000426105	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000426105	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000440538	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000440538	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000440538	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000440538	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000373741	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373741	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373741	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373741	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000423018	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000423018	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000423018	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000423018	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000373742	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000490546	ENST00000373736		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000263693		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000528449		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000398657		TCGA	RV	LUAD	TCGA-38-4631-01A	PUM1	chr1	31532051	-	NKAIN1	chr1	31661034	-
5CDS-5UTR	ENST00000358026	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000358026	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000358026	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000344626	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000344626	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000344626	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000429416	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000429416	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000429416	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000541122	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000541122	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000541122	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000589677	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000589677	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000589677	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000444061	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000444061	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000444061	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000590574	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000590574	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000590574	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000413806	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000413806	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000413806	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000450717	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000450717	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
5CDS-5UTR	ENST00000450717	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
intron-5UTR	ENST00000538456	ENST00000586702		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
intron-5UTR	ENST00000538456	ENST00000294618		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
intron-5UTR	ENST00000538456	ENST00000319867		TCGA	RV	LUAD	TCGA-55-8505-01A	SMARCA4	chr19	11130377	+	DOCK6	chr19	11311728	-
In-frame	ENST00000285243	ENST00000519595		TCGA	RV	LUAD	TCGA-L9-A443-01A	ANKRD40	chr17	48774301	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000285243	ENST00000518642		TCGA	RV	LUAD	TCGA-L9-A443-01A	ANKRD40	chr17	48774301	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000285243	ENST00000250173		TCGA	RV	LUAD	TCGA-L9-A443-01A	ANKRD40	chr17	48774301	-	LRRC6	chr8	133622507	-
5CDS-intron	ENST00000285243	ENST00000520446		TCGA	RV	LUAD	TCGA-L9-A443-01A	ANKRD40	chr17	48774301	-	LRRC6	chr8	133622507	-
In-frame	ENST00000359314	ENST00000275015		TCGA	RV	LUAD	TCGA-05-4402-01A	CD2AP	chr6	47445984	+	NFKBIE	chr6	44228276	-
intron-3CDS	ENST00000486693	ENST00000275015		TCGA	RV	LUAD	TCGA-05-4402-01A	CD2AP	chr6	47445984	+	NFKBIE	chr6	44228276	-
In-frame	ENST00000399788	ENST00000395841		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000399788	ENST00000371242		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000399788	ENST00000527947		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000399788	ENST00000395840		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
intron-3CDS	ENST00000540838	ENST00000395841		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
intron-3CDS	ENST00000540838	ENST00000371242		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
intron-3CDS	ENST00000540838	ENST00000527947		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
intron-3CDS	ENST00000540838	ENST00000395840		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000382815	ENST00000395841		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000382815	ENST00000371242		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000382815	ENST00000527947		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000382815	ENST00000395840		TCGA	RV	LUAD	TCGA-44-A47B-01A	KDM5A	chr12	459787	-	RAE1	chr20	55940412	+
In-frame	ENST00000367064	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
In-frame	ENST00000367063	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
In-frame	ENST00000391921	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
3UTR-3CDS	ENST00000367067	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
In-frame	ENST00000314754	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
In-frame	ENST00000391920	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
In-frame	ENST00000367062	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
In-frame	ENST00000367065	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
3UTR-3CDS	ENST00000465534	ENST00000367070		TCGA	RV	LUAD	TCGA-86-7953-01A	CD55	chr1	207500182	+	C4BPA	chr1	207300058	+
5CDS-intron	ENST00000299767	ENST00000216297		TCGA	RV	LUAD	TCGA-78-7148-01A	HSP90B1	chr12	104341704	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000299767	ENST00000555943		TCGA	RV	LUAD	TCGA-78-7148-01A	HSP90B1	chr12	104341704	+	SUPT16H	chr14	21829491	-
5UTR-3CDS	ENST00000313833	ENST00000254301		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
5UTR-3UTR	ENST00000313833	ENST00000553755		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
5UTR-3UTR	ENST00000313833	ENST00000554715		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
intron-3CDS	ENST00000555087	ENST00000254301		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000555087	ENST00000553755		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000555087	ENST00000554715		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
intron-3CDS	ENST00000440021	ENST00000254301		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000440021	ENST00000553755		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000440021	ENST00000554715		TCGA	RV	LUAD	TCGA-44-4112-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55606993	+
5CDS-5UTR	ENST00000297071	ENST00000476620		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5CDS-5UTR	ENST00000297071	ENST00000559325		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5CDS-5UTR	ENST00000297071	ENST00000199448		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5CDS-intron	ENST00000297071	ENST00000423717		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5CDS-intron	ENST00000297071	ENST00000425345		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-5UTR	ENST00000392502	ENST00000476620		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-5UTR	ENST00000392502	ENST00000559325		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-5UTR	ENST00000392502	ENST00000199448		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-intron	ENST00000392502	ENST00000423717		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-intron	ENST00000392502	ENST00000425345		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-5UTR	ENST00000538367	ENST00000476620		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-5UTR	ENST00000538367	ENST00000559325		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-5UTR	ENST00000538367	ENST00000199448		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-intron	ENST00000538367	ENST00000423717		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
5UTR-intron	ENST00000538367	ENST00000425345		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
intron-5UTR	ENST00000474586	ENST00000476620		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
intron-5UTR	ENST00000474586	ENST00000559325		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
intron-5UTR	ENST00000474586	ENST00000199448		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
intron-intron	ENST00000474586	ENST00000423717		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
intron-intron	ENST00000474586	ENST00000425345		TCGA	RV	LUAD	TCGA-86-7954-01A	TRA2A	chr7	23571408	-	EPDR1	chr7	37988442	+
intron-3CDS	ENST00000544301	ENST00000404984		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000544301	ENST00000402050		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000544301	ENST00000438376		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000544301	ENST00000325979		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-intron	ENST00000544301	ENST00000497572		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000224237	ENST00000404984		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000224237	ENST00000402050		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000224237	ENST00000438376		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000224237	ENST00000325979		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000224237	ENST00000497572		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000485947	ENST00000404984		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000485947	ENST00000402050		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000485947	ENST00000438376		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000485947	ENST00000325979		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
intron-intron	ENST00000485947	ENST00000497572		TCGA	RV	LUAD	TCGA-75-7025-01A	VIM	chr10	17279592	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000508803	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000508803	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000508803	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000508803	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382892	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382892	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382892	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382892	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382891	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382891	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382891	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382891	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382895	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382895	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382895	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382895	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
3UTR-intron	ENST00000482415	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
3UTR-intron	ENST00000482415	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
3UTR-intron	ENST00000482415	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
3UTR-intron	ENST00000482415	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382888	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382888	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382888	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-intron	ENST00000382888	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000514045	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000514045	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000514045	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000514045	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000436793	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000436793	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000436793	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000436793	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000420906	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000420906	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000420906	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000420906	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000503128	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000503128	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000503128	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000503128	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000398261	ENST00000308132		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000398261	ENST00000489363		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000398261	ENST00000461064		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
intron-intron	ENST00000398261	ENST00000472884		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	FAM53A	chr4	1619838	-
5CDS-3UTR	ENST00000331925	ENST00000355327		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000331925	ENST00000261862		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000331925	ENST00000357769		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000331925	ENST00000567838		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000573283	ENST00000355327		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000573283	ENST00000261862		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-intron	ENST00000573283	ENST00000357769		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-intron	ENST00000573283	ENST00000567838		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000575842	ENST00000355327		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000575842	ENST00000261862		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-intron	ENST00000575842	ENST00000357769		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-intron	ENST00000575842	ENST00000567838		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000575087	ENST00000355327		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000575087	ENST00000261862		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-intron	ENST00000575087	ENST00000357769		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
intron-intron	ENST00000575087	ENST00000567838		TCGA	RV	LUAD	TCGA-71-6725-01A	ACTG1	chr17	79476999	-	THSD4	chr15	72072881	+
In-frame	ENST00000421025	ENST00000285279		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
In-frame	ENST00000421025	ENST00000433959		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
In-frame	ENST00000421025	ENST00000545390		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000421025	ENST00000428648		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000421025	ENST00000428097		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000421025	ENST00000418904		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000421025	ENST00000454227		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-intron	ENST00000421025	ENST00000453256		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-intron	ENST00000421025	ENST00000427700		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000421025	ENST00000471168		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
In-frame	ENST00000255746	ENST00000285279		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
In-frame	ENST00000255746	ENST00000433959		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
In-frame	ENST00000255746	ENST00000545390		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000255746	ENST00000428648		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000255746	ENST00000428097		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000255746	ENST00000418904		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000255746	ENST00000454227		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-intron	ENST00000255746	ENST00000453256		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-intron	ENST00000255746	ENST00000427700		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
5CDS-5UTR	ENST00000255746	ENST00000471168		TCGA	RV	LUAD	TCGA-05-4402-01A	ZNF679	chr7	63709534	+	VOPP1	chr7	55588823	-
Frame-shit	ENST00000263102	ENST00000344577		TCGA	RV	LUAD	TCGA-44-8117-01A	CCDC6	chr10	61612311	-	LIPI	chr21	15481401	-
In-frame	ENST00000263102	ENST00000536861		TCGA	RV	LUAD	TCGA-44-8117-01A	CCDC6	chr10	61612311	-	LIPI	chr21	15481401	-
In-frame	ENST00000361337	ENST00000360469		TCGA	RV	LUAD	TCGA-05-4244-01A	TOP1	chr20	39658095	+	CDH4	chr20	60318619	+
5CDS-5UTR	ENST00000361337	ENST00000543233		TCGA	RV	LUAD	TCGA-05-4244-01A	TOP1	chr20	39658095	+	CDH4	chr20	60318619	+
In-frame	ENST00000508803	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000508803	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000508803	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000508803	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000508803	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000508803	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382892	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382892	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382892	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382892	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382892	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382892	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382891	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382891	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382891	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382891	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382891	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382891	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382895	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382895	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382895	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382895	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382895	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382895	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
3UTR-3CDS	ENST00000482415	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
3UTR-3CDS	ENST00000482415	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
3UTR-3CDS	ENST00000482415	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
3UTR-3CDS	ENST00000482415	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
3UTR-3CDS	ENST00000482415	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
3UTR-3CDS	ENST00000482415	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382888	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382888	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382888	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382888	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382888	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
In-frame	ENST00000382888	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000514045	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000514045	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000514045	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000514045	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000514045	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000514045	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000436793	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000436793	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000436793	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000436793	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000436793	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000436793	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000420906	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000420906	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000420906	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000420906	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000420906	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000420906	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000503128	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000503128	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000503128	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000503128	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000503128	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000503128	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000398261	ENST00000360317		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000398261	ENST00000394175		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000398261	ENST00000309481		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000398261	ENST00000520542		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000398261	ENST00000418519		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000398261	ENST00000394179		TCGA	RV	LUAD	TCGA-38-4630-01A	WHSC1	chr4	1957915	+	GSDMB	chr17	38068750	-
5UTR-3CDS	ENST00000322231	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-3CDS	ENST00000322231	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-intron	ENST00000322231	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
In-frame	ENST00000339077	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
In-frame	ENST00000339077	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5CDS-intron	ENST00000339077	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-3CDS	ENST00000539124	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-3CDS	ENST00000539124	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-intron	ENST00000539124	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-3CDS	ENST00000542558	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-3CDS	ENST00000542558	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5UTR-intron	ENST00000542558	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000409689	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000409689	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-intron	ENST00000409689	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000545443	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000545443	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-intron	ENST00000545443	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
3UTR-3CDS	ENST00000479288	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
3UTR-3CDS	ENST00000479288	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
3UTR-intron	ENST00000479288	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
In-frame	ENST00000322275	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
In-frame	ENST00000322275	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
5CDS-intron	ENST00000322275	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000410047	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000410047	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-intron	ENST00000410047	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000545771	ENST00000409508		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-3CDS	ENST00000545771	ENST00000328843		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
intron-intron	ENST00000545771	ENST00000465593		TCGA	RV	LUAD	TCGA-55-8089-01A	KLHL7	chr7	23145765	+	DNAH11	chr7	21584624	+
Frame-shit	ENST00000253719	ENST00000369002		TCGA	RV	LUAD	TCGA-69-7974-01A	NAPSA	chr19	50861735	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000253719	ENST00000460009		TCGA	RV	LUAD	TCGA-69-7974-01A	NAPSA	chr19	50861735	-	SEC63	chr6	108214782	-
5UTR-intron	ENST00000337959	ENST00000331018		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000337959	ENST00000266254		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000337959	ENST00000445824		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000263246	ENST00000331018		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000263246	ENST00000266254		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000263246	ENST00000445824		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000407585	ENST00000331018		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000407585	ENST00000266254		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000407585	ENST00000445824		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000403744	ENST00000331018		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000403744	ENST00000266254		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000403744	ENST00000445824		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000402229	ENST00000331018		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000402229	ENST00000266254		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000402229	ENST00000445824		TCGA	RV	LUAD	TCGA-49-AARQ-01A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
Frame-shit	ENST00000265109	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000265109	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000265109	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
Frame-shit	ENST00000512629	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000512629	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000512629	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
Frame-shit	ENST00000428746	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000428746	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000428746	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
Frame-shit	ENST00000503673	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000503673	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000503673	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5UTR-3CDS	ENST00000515799	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5UTR-intron	ENST00000515799	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5UTR-intron	ENST00000515799	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-3CDS	ENST00000506376	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000506376	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000506376	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-3CDS	ENST00000507276	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000507276	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000507276	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-3CDS	ENST00000397449	ENST00000325885		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000397449	ENST00000257621		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000397449	ENST00000428113		TCGA	RV	LUAD	TCGA-73-4666-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
3UTR-intron	ENST00000331595	ENST00000367545		TCGA	RV	LUAD	TCGA-44-6774-01A	BGN	chrX	152775004	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000331595	ENST00000367526		TCGA	RV	LUAD	TCGA-44-6774-01A	BGN	chrX	152775004	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000331595	ENST00000480333		TCGA	RV	LUAD	TCGA-44-6774-01A	BGN	chrX	152775004	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000480756	ENST00000367545		TCGA	RV	LUAD	TCGA-44-6774-01A	BGN	chrX	152775004	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000480756	ENST00000367526		TCGA	RV	LUAD	TCGA-44-6774-01A	BGN	chrX	152775004	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000480756	ENST00000480333		TCGA	RV	LUAD	TCGA-44-6774-01A	BGN	chrX	152775004	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000397786	ENST00000578681		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
Frame-shit	ENST00000397786	ENST00000583590		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
Frame-shit	ENST00000397786	ENST00000359353		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
Frame-shit	ENST00000397786	ENST00000389924		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
Frame-shit	ENST00000397786	ENST00000457800		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
5CDS-intron	ENST00000397786	ENST00000582985		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-3CDS	ENST00000580896	ENST00000578681		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-3CDS	ENST00000580896	ENST00000583590		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-3CDS	ENST00000580896	ENST00000359353		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-3CDS	ENST00000580896	ENST00000389924		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-3CDS	ENST00000580896	ENST00000457800		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-intron	ENST00000580896	ENST00000582985		TCGA	RV	LUAD	TCGA-78-7146-01A	MED13	chr17	60129898	-	DDX42	chr17	61886180	+
intron-3CDS	ENST00000456518	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000456518	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000456518	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000456518	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000456518	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397174	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397174	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397174	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397174	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000397174	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000402904	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000402904	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000402904	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000402904	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000402904	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361191	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361191	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361191	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361191	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000361191	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397171	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397171	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397171	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000397171	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000397171	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361705	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361705	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361705	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000361705	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000361705	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000326197	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000326197	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000326197	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000326197	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000326197	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000372595	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000372595	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000372595	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000372595	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000372595	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000337495	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000337495	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000337495	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000337495	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-intron	ENST00000337495	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372596	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372596	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372596	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372596	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-intron	ENST00000372596	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372597	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372597	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372597	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-3CDS	ENST00000372597	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
5UTR-intron	ENST00000372597	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000472037	ENST00000264414		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000472037	ENST00000344951		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000472037	ENST00000409096		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-3CDS	ENST00000472037	ENST00000409777		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
intron-intron	ENST00000472037	ENST00000432260		TCGA	RV	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225346795	-
Frame-shit	ENST00000421834	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000421834	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000370769	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000370769	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000312431	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000312431	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000370754	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000370754	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000370788	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000370788	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000361203	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
Frame-shit	ENST00000361203	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000244364	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000244364	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000446842	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000446842	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000340834	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000340834	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000370765	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000370765	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000518935	ENST00000246551		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
intron-3CDS	ENST00000518935	ENST00000437550		TCGA	RV	LUAD	TCGA-35-4123-01A	DST	chr6	56707853	-	HCST	chr19	36394253	+
5CDS-intron	ENST00000309311	ENST00000309364		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000359180		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000317589		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000355397		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000429027		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000539256		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000299275		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000538714		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000543806		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000424268		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000540972		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000309311	ENST00000510738		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000309364		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000359180		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000317589		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000355397		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000429027		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000539256		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000299275		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000538714		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000543806		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000424268		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000540972		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000600720	ENST00000510738		TCGA	RV	LUAD	TCGA-86-6851-01A	EEF2	chr19	3976055	-	PLEKHA5	chr12	19441012	+
intron-3CDS	ENST00000448841	ENST00000369902		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000448841	ENST00000369899		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
intron-3CDS	ENST00000448841	ENST00000423559		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
intron-3UTR	ENST00000448841	ENST00000471000		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000369889	ENST00000369902		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000369889	ENST00000369899		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000369889	ENST00000423559		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
5CDS-3UTR	ENST00000369889	ENST00000471000		TCGA	RV	LUAD	TCGA-38-4630-01A	WBP1L	chr10	104536174	+	SUFU	chr10	104352339	+
intron-intron	ENST00000434271	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000434271	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000434271	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000353047	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000353047	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000353047	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000530640	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000530640	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000530640	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000531089	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000531089	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000531089	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000453527	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000453527	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000453527	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000415599	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000415599	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000415599	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000345125	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000345125	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000345125	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000533455	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000533455	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000533455	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000534510	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000534510	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000534510	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000525076	ENST00000354817		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000525076	ENST00000527202		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
intron-intron	ENST00000525076	ENST00000532502		TCGA	RV	LUAD	TCGA-86-6851-01A	CTSB	chr8	11701829	-	FAR1	chr11	13744912	+
Frame-shit	ENST00000368026	ENST00000530878		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
Frame-shit	ENST00000368026	ENST00000361897		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
5CDS-intron	ENST00000368026	ENST00000493151		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
5CDS-intron	ENST00000368026	ENST00000454693		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
3UTR-3CDS	ENST00000289779	ENST00000530878		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
3UTR-3CDS	ENST00000289779	ENST00000361897		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
3UTR-intron	ENST00000289779	ENST00000493151		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
3UTR-intron	ENST00000289779	ENST00000454693		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
Frame-shit	ENST00000537746	ENST00000530878		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
Frame-shit	ENST00000537746	ENST00000361897		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
5CDS-intron	ENST00000537746	ENST00000493151		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
5CDS-intron	ENST00000537746	ENST00000454693		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
intron-3CDS	ENST00000472573	ENST00000530878		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
intron-3CDS	ENST00000472573	ENST00000361897		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
intron-intron	ENST00000472573	ENST00000493151		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
intron-intron	ENST00000472573	ENST00000454693		TCGA	RV	LUAD	TCGA-78-7146-01A	F11R	chr1	160990800	-	NOS1AP	chr1	162324977	+
Frame-shit	ENST00000397817	ENST00000383018		TCGA	RV	LUAD	TCGA-97-A4M7-01A	MPG	chr16	133255	+	SNRNP25	chr16	107086	+
5CDS-intron	ENST00000397817	ENST00000493672		TCGA	RV	LUAD	TCGA-97-A4M7-01A	MPG	chr16	133255	+	SNRNP25	chr16	107086	+
Frame-shit	ENST00000219431	ENST00000383018		TCGA	RV	LUAD	TCGA-97-A4M7-01A	MPG	chr16	133255	+	SNRNP25	chr16	107086	+
5CDS-intron	ENST00000219431	ENST00000493672		TCGA	RV	LUAD	TCGA-97-A4M7-01A	MPG	chr16	133255	+	SNRNP25	chr16	107086	+
intron-3CDS	ENST00000475280	ENST00000383018		TCGA	RV	LUAD	TCGA-97-A4M7-01A	MPG	chr16	133255	+	SNRNP25	chr16	107086	+
intron-intron	ENST00000475280	ENST00000493672		TCGA	RV	LUAD	TCGA-97-A4M7-01A	MPG	chr16	133255	+	SNRNP25	chr16	107086	+
In-frame	ENST00000424789	ENST00000598494		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000424789	ENST00000600229		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000424789	ENST00000356762		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000424789	ENST00000308243		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000598494		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000600229		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000356762		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
In-frame	ENST00000389520	ENST00000308243		TCGA	RV	LUAD	TCGA-50-5946-01A	TANC2	chr17	61345234	+	CRB3	chr19	6465556	+
5UTR-3CDS	ENST00000248244	ENST00000593993		TCGA	RV	LUAD	TCGA-05-4426-01A	TICAM1	chr19	4831626	-	IL12RB1	chr19	18180523	-
5UTR-3CDS	ENST00000248244	ENST00000600835		TCGA	RV	LUAD	TCGA-05-4426-01A	TICAM1	chr19	4831626	-	IL12RB1	chr19	18180523	-
5UTR-intron	ENST00000248244	ENST00000322153		TCGA	RV	LUAD	TCGA-05-4426-01A	TICAM1	chr19	4831626	-	IL12RB1	chr19	18180523	-
5CDS-intron	ENST00000199764	ENST00000371754		TCGA	RV	LUAD	TCGA-49-4501-01A	CEACAM6	chr19	42276113	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000199764	ENST00000469991		TCGA	RV	LUAD	TCGA-49-4501-01A	CEACAM6	chr19	42276113	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000199764	ENST00000371752		TCGA	RV	LUAD	TCGA-49-4501-01A	CEACAM6	chr19	42276113	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000199764	ENST00000396105		TCGA	RV	LUAD	TCGA-49-4501-01A	CEACAM6	chr19	42276113	+	ZNFX1	chr20	47863418	-
5UTR-3CDS	ENST00000304363	ENST00000255087		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-intron	ENST00000304363	ENST00000540869		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-intron	ENST00000304363	ENST00000443940		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-intron	ENST00000304363	ENST00000544963		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-3CDS	ENST00000401547	ENST00000255087		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-intron	ENST00000401547	ENST00000540869		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-intron	ENST00000401547	ENST00000443940		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5UTR-intron	ENST00000401547	ENST00000544963		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-3CDS	ENST00000405515	ENST00000255087		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000405515	ENST00000540869		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000405515	ENST00000443940		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000405515	ENST00000544963		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-3CDS	ENST00000402789	ENST00000255087		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000402789	ENST00000540869		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000402789	ENST00000443940		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000402789	ENST00000544963		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-3CDS	ENST00000402185	ENST00000255087		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000402185	ENST00000540869		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000402185	ENST00000443940		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
intron-intron	ENST00000402185	ENST00000544963		TCGA	RV	LUAD	TCGA-38-4630-01A	SUV420H1	chr11	67980605	-	MTL5	chr11	68480875	-
5CDS-intron	ENST00000348943	ENST00000601760		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000348943	ENST00000301454		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000348943	ENST00000414491		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000348943	ENST00000334510		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000325495	ENST00000601760		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000325495	ENST00000301454		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000325495	ENST00000414491		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
5CDS-intron	ENST00000325495	ENST00000334510		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
intron-intron	ENST00000602219	ENST00000601760		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
intron-intron	ENST00000602219	ENST00000301454		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
intron-intron	ENST00000602219	ENST00000414491		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
intron-intron	ENST00000602219	ENST00000334510		TCGA	RV	LUAD	TCGA-75-5125-01A	HNRNPM	chr19	8509995	+	SLC25A23	chr19	6438545	-
In-frame	ENST00000159111	ENST00000397410		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
In-frame	ENST00000159111	ENST00000595465		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000159111	ENST00000595879		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000381759	ENST00000397410		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000381759	ENST00000595465		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-intron	ENST00000381759	ENST00000595879		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
In-frame	ENST00000536461	ENST00000397410		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
In-frame	ENST00000536461	ENST00000595465		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000536461	ENST00000595879		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000592175	ENST00000397410		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-3CDS	ENST00000592175	ENST00000595465		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-intron	ENST00000592175	ENST00000595879		TCGA	RV	LUAD	TCGA-49-4486-01A	KDM4B	chr19	5144913	+	AKAP8L	chr19	15491423	-
intron-intron	ENST00000458659	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000458659	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000501704	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000261489	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000309364		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000359180		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000317589		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000355397		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000429027		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000539256		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000299275		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000538714		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000543806		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000424268		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000540972		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000460842	ENST00000510738		TCGA	RV	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45007661	-	PLEKHA5	chr12	19441012	+
5CDS-3UTR	ENST00000309311	ENST00000355327		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000309311	ENST00000261862		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000357769		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000309311	ENST00000567838		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000600720	ENST00000355327		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000600720	ENST00000261862		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000600720	ENST00000357769		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
intron-intron	ENST00000600720	ENST00000567838		TCGA	RV	LUAD	TCGA-44-5644-01A	EEF2	chr19	3976055	-	THSD4	chr15	72072881	+
In-frame	ENST00000318522	ENST00000389048		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000431873		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000498037		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
In-frame	ENST00000402711	ENST00000389048		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000431873		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000498037		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000482660	ENST00000389048		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000431873		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000498037		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000453191	ENST00000389048		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000431873		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-intron	ENST00000453191	ENST00000498037		TCGA	RV	LUAD	TCGA-78-7163-01A	EML4	chr2	42522656	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-2665-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000476233	ENST00000263593		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
intron-intron	ENST00000476233	ENST00000545756		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
intron-intron	ENST00000476233	ENST00000525730		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000354667	ENST00000263593		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
intron-intron	ENST00000354667	ENST00000545756		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
intron-intron	ENST00000354667	ENST00000525730		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
In-frame	ENST00000356674	ENST00000263593		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000356674	ENST00000545756		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000356674	ENST00000525730		TCGA	RV	LUAD	TCGA-71-6725-01A	HNRNPA2B1	chr7	26231467	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-4112-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000306494	ENST00000320580		TCGA	RV	LUAD	TCGA-97-8174-01A	SLC22A25	chr11	62995933	-	PACS1	chr11	65998019	+
5CDS-5UTR	ENST00000306494	ENST00000529757		TCGA	RV	LUAD	TCGA-97-8174-01A	SLC22A25	chr11	62995933	-	PACS1	chr11	65998019	+
5CDS-intron	ENST00000306494	ENST00000524815		TCGA	RV	LUAD	TCGA-97-8174-01A	SLC22A25	chr11	62995933	-	PACS1	chr11	65998019	+
5UTR-3CDS	ENST00000403374	ENST00000320580		TCGA	RV	LUAD	TCGA-97-8174-01A	SLC22A25	chr11	62995933	-	PACS1	chr11	65998019	+
5UTR-5UTR	ENST00000403374	ENST00000529757		TCGA	RV	LUAD	TCGA-97-8174-01A	SLC22A25	chr11	62995933	-	PACS1	chr11	65998019	+
5UTR-intron	ENST00000403374	ENST00000524815		TCGA	RV	LUAD	TCGA-97-8174-01A	SLC22A25	chr11	62995933	-	PACS1	chr11	65998019	+
intron-3CDS	ENST00000503238	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-3CDS	ENST00000358350	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-3CDS	ENST00000537810	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-3CDS	ENST00000264319	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-3CDS	ENST00000507711	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-3CDS	ENST00000514783	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000514783	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000514783	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-3CDS	ENST00000507873	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-3CDS	ENST00000506685	ENST00000508632		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	RV	LUAD	TCGA-64-5774-01A	FRYL	chr4	48712536	-	OCIAD2	chr4	48896070	-
In-frame	ENST00000303127	ENST00000253496		TCGA	RV	LUAD	TCGA-55-8299-01A	LMAN2	chr5	176761285	-	F12	chr5	176831091	-
5CDS-intron	ENST00000303127	ENST00000514943		TCGA	RV	LUAD	TCGA-55-8299-01A	LMAN2	chr5	176761285	-	F12	chr5	176831091	-
In-frame	ENST00000515209	ENST00000253496		TCGA	RV	LUAD	TCGA-55-8299-01A	LMAN2	chr5	176761285	-	F12	chr5	176831091	-
5CDS-intron	ENST00000515209	ENST00000514943		TCGA	RV	LUAD	TCGA-55-8299-01A	LMAN2	chr5	176761285	-	F12	chr5	176831091	-
intron-3CDS	ENST00000506310	ENST00000253496		TCGA	RV	LUAD	TCGA-55-8299-01A	LMAN2	chr5	176761285	-	F12	chr5	176831091	-
intron-intron	ENST00000506310	ENST00000514943		TCGA	RV	LUAD	TCGA-55-8299-01A	LMAN2	chr5	176761285	-	F12	chr5	176831091	-
5CDS-5UTR	ENST00000293218	ENST00000504681		TCGA	RV	LUAD	TCGA-50-6673-01A	UNK	chr17	73781065	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000293218	ENST00000393354		TCGA	RV	LUAD	TCGA-50-6673-01A	UNK	chr17	73781065	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000293218	ENST00000300404		TCGA	RV	LUAD	TCGA-50-6673-01A	UNK	chr17	73781065	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000589666	ENST00000504681		TCGA	RV	LUAD	TCGA-50-6673-01A	UNK	chr17	73781065	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000589666	ENST00000393354		TCGA	RV	LUAD	TCGA-50-6673-01A	UNK	chr17	73781065	+	B4GALNT2	chr17	47218609	+
5CDS-5UTR	ENST00000589666	ENST00000300404		TCGA	RV	LUAD	TCGA-50-6673-01A	UNK	chr17	73781065	+	B4GALNT2	chr17	47218609	+
Frame-shit	ENST00000337959	ENST00000331018		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000337959	ENST00000266254		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000337959	ENST00000445824		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000263246	ENST00000331018		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000263246	ENST00000266254		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000263246	ENST00000445824		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000407585	ENST00000331018		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000407585	ENST00000266254		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000407585	ENST00000445824		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000403744	ENST00000331018		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000403744	ENST00000266254		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000403744	ENST00000445824		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000402229	ENST00000331018		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000402229	ENST00000266254		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000402229	ENST00000445824		TCGA	RV	LUAD	TCGA-50-6597-01A	PACSIN2	chr22	43308027	-	TTLL1	chr22	43435911	-
In-frame	ENST00000372715	ENST00000291900		TCGA	RV	LUAD	TCGA-38-4630-01A	WDR34	chr9	131402970	-	ZER1	chr9	131505024	-
5CDS-intron	ENST00000372715	ENST00000494461		TCGA	RV	LUAD	TCGA-38-4630-01A	WDR34	chr9	131402970	-	ZER1	chr9	131505024	-
intron-3CDS	ENST00000483181	ENST00000291900		TCGA	RV	LUAD	TCGA-38-4630-01A	WDR34	chr9	131402970	-	ZER1	chr9	131505024	-
intron-intron	ENST00000483181	ENST00000494461		TCGA	RV	LUAD	TCGA-38-4630-01A	WDR34	chr9	131402970	-	ZER1	chr9	131505024	-
Frame-shit	ENST00000441714	ENST00000164640		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000441714	ENST00000393758		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000441714	ENST00000544474		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000441714	ENST00000475140		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
In-frame	ENST00000345046	ENST00000164640		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000345046	ENST00000393758		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000345046	ENST00000544474		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000345046	ENST00000475140		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
Frame-shit	ENST00000458587	ENST00000164640		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000458587	ENST00000393758		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-intron	ENST00000458587	ENST00000544474		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5CDS-5UTR	ENST00000458587	ENST00000475140		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5UTR-3CDS	ENST00000468947	ENST00000164640		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5UTR-5UTR	ENST00000468947	ENST00000393758		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5UTR-intron	ENST00000468947	ENST00000544474		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
5UTR-5UTR	ENST00000468947	ENST00000475140		TCGA	RV	LUAD	TCGA-38-4630-01A	BCAP31	chrX	152986327	-	PDZD4	chrX	153074050	-
intron-intron	ENST00000434271	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000434271	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000353047	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000353047	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000530640	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000530640	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000531089	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000531089	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000453527	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000453527	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000415599	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000415599	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000345125	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000345125	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000533455	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000533455	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000534510	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000534510	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000525076	ENST00000371917		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000525076	ENST00000493140		TCGA	RV	LUAD	TCGA-71-6725-01A	CTSB	chr8	11701829	-	ARFGEF2	chr20	47615777	+
In-frame	ENST00000349938	ENST00000373635		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
In-frame	ENST00000349938	ENST00000308696		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
In-frame	ENST00000349938	ENST00000409643		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
5CDS-intron	ENST00000349938	ENST00000488354		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
3UTR-3CDS	ENST00000483477	ENST00000373635		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
3UTR-3CDS	ENST00000483477	ENST00000308696		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
3UTR-3CDS	ENST00000483477	ENST00000409643		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
3UTR-intron	ENST00000483477	ENST00000488354		TCGA	RV	LUAD	TCGA-49-AARQ-01A	ARMC9	chr2	232079714	+	PSMD1	chr2	232035280	+
In-frame	ENST00000531863	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000531863	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000531863	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000532677	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000532677	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000532677	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000453114	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000453114	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000453114	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000360510	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000360510	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000360510	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000541961	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000541961	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000541961	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000530165	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000530165	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
In-frame	ENST00000530165	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
intron-3CDS	ENST00000533799	ENST00000309366		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
intron-3CDS	ENST00000533799	ENST00000449942		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
intron-3CDS	ENST00000533799	ENST00000394540		TCGA	RV	LUAD	TCGA-97-A4M3-01A	DPP3	chr11	66272245	+	FKBP2	chr11	64011313	+
Frame-shit	ENST00000413953	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000413953	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5CDS-intron	ENST00000413953	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000347140	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000347140	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5CDS-intron	ENST00000347140	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000358907	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000358907	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5CDS-intron	ENST00000358907	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000402412	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
Frame-shit	ENST00000402412	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5CDS-intron	ENST00000402412	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
In-frame	ENST00000441731	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
In-frame	ENST00000441731	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5CDS-intron	ENST00000441731	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
In-frame	ENST00000403821	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
In-frame	ENST00000403821	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5CDS-intron	ENST00000403821	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
intron-3CDS	ENST00000546843	ENST00000537081		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
intron-3CDS	ENST00000546843	ENST00000257861		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
intron-intron	ENST00000546843	ENST00000550083		TCGA	RV	LUAD	TCGA-49-AAR0-01A	R3HDM2	chr12	57677607	-	AVIL	chr12	58208009	-
5UTR-3CDS	ENST00000395571	ENST00000522455		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000395571	ENST00000521695		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000395571	ENST00000521268		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000395571	ENST00000518566		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000395571	ENST00000517638		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000395571	ENST00000523850		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000395571	ENST00000521376		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000522455		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000521695		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000521268		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000518566		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000517638		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000523850		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000297857	ENST00000521376		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000522455		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000521695		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000521268		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000518566		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000517638		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000523850		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522655	ENST00000521376		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000522455		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000521695		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000521268		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000518566		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000517638		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000523850		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
intron-3CDS	ENST00000522595	ENST00000521376		TCGA	RV	LUAD	TCGA-05-4422-01A	ZHX1	chr8	124286457	-	RALYL	chr8	85686814	+
5UTR-3CDS	ENST00000319769	ENST00000589222		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000319769	ENST00000407086		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000319769	ENST00000390652		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000319769	ENST00000408905		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000319769	ENST00000588462		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000319769	ENST00000585744		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000319769	ENST00000588874		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-intron	ENST00000319769	ENST00000585812		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000589222		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000407086		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000390652		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000408905		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000588462		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000585744		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-3CDS	ENST00000470882	ENST00000588874		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
intron-intron	ENST00000470882	ENST00000585812		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000589222		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000407086		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000390652		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000408905		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000588462		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000585744		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-3CDS	ENST00000367998	ENST00000588874		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5UTR-intron	ENST00000367998	ENST00000585812		TCGA	RV	LUAD	TCGA-55-8511-01A	B4GALT3	chr1	161147213	-	BCAS3	chr17	59161828	+
5CDS-5UTR	ENST00000269967	ENST00000396060		TCGA	RV	LUAD	TCGA-49-6743-01A	CCDC97	chr19	41816261	+	GTF2A2	chr15	59944525	-
5CDS-intron	ENST00000269967	ENST00000267869		TCGA	RV	LUAD	TCGA-49-6743-01A	CCDC97	chr19	41816261	+	GTF2A2	chr15	59944525	-
5CDS-5UTR	ENST00000269967	ENST00000396064		TCGA	RV	LUAD	TCGA-49-6743-01A	CCDC97	chr19	41816261	+	GTF2A2	chr15	59944525	-
5CDS-5UTR	ENST00000269967	ENST00000396063		TCGA	RV	LUAD	TCGA-49-6743-01A	CCDC97	chr19	41816261	+	GTF2A2	chr15	59944525	-
5CDS-5UTR	ENST00000269967	ENST00000396061		TCGA	RV	LUAD	TCGA-49-6743-01A	CCDC97	chr19	41816261	+	GTF2A2	chr15	59944525	-
5CDS-5UTR	ENST00000269967	ENST00000484743		TCGA	RV	LUAD	TCGA-49-6743-01A	CCDC97	chr19	41816261	+	GTF2A2	chr15	59944525	-
Frame-shit	ENST00000199764	ENST00000263593		TCGA	RV	LUAD	TCGA-55-6984-01A	CEACAM6	chr19	42276113	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000199764	ENST00000545756		TCGA	RV	LUAD	TCGA-55-6984-01A	CEACAM6	chr19	42276113	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000199764	ENST00000525730		TCGA	RV	LUAD	TCGA-55-6984-01A	CEACAM6	chr19	42276113	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000234590	ENST00000261531		TCGA	RV	LUAD	TCGA-78-7149-01A	ENO1	chr1	8921061	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000234590	ENST00000554775		TCGA	RV	LUAD	TCGA-78-7149-01A	ENO1	chr1	8921061	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000234590	ENST00000555761		TCGA	RV	LUAD	TCGA-78-7149-01A	ENO1	chr1	8921061	-	SNW1	chr14	78189203	-
In-frame	ENST00000295025	ENST00000357402		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-intron	ENST00000295025	ENST00000452209		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-intron	ENST00000295025	ENST00000395353		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-intron	ENST00000295025	ENST00000566554		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
In-frame	ENST00000394479	ENST00000357402		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-intron	ENST00000394479	ENST00000452209		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-intron	ENST00000394479	ENST00000395353		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-intron	ENST00000394479	ENST00000566554		TCGA	RV	LUAD	TCGA-49-6743-01A	REL	chr2	61144152	+	MVP	chr16	29847025	+
5CDS-3UTR	ENST00000383329	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000383329	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000383329	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000376228	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000376228	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000376228	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000423509	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000423509	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000423509	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000430940	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000430940	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430940	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000422726	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000422726	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422726	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000424832	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000424832	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424832	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000458192	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000458192	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458192	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000422921	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000422921	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000422921	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000456487	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000456487	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000456487	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000420206	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000420206	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000420206	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000495725	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000495725	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495725	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000419135	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000419135	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419135	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000433153	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000433153	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000433153	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000429840	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000429840	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000429840	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000457903	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000457903	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000457903	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000479546	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000479546	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000479546	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000400395	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000400395	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400395	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000383323	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000383323	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383323	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000434884	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000434884	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000434884	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000400394	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000400394	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400394	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000494871	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000494871	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000494871	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000453809	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000453809	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000453809	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000414249	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000414249	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000414249	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000419590	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000419590	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000419590	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000438171	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000438171	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000438171	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000552865	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000552865	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000552865	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000495898	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000495898	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000495898	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000383483	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000383483	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383483	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000383487	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000383487	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000383487	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000458668	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000458668	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000458668	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000400341	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000400341	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000400341	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	HLA-C	chr6	31236528	-	FOXP1	chr3	71007472	-
In-frame	ENST00000283415	ENST00000264932		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
5CDS-intron	ENST00000283415	ENST00000504309		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
5CDS-intron	ENST00000283415	ENST00000510361		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
5CDS-intron	ENST00000283415	ENST00000507522		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
intron-3CDS	ENST00000503252	ENST00000264932		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
intron-intron	ENST00000503252	ENST00000504309		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
intron-intron	ENST00000503252	ENST00000510361		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
intron-intron	ENST00000503252	ENST00000507522		TCGA	RV	LUAD	TCGA-55-8506-01A	LPCAT1	chr5	1488506	-	SDHA	chr5	251453	+
Frame-shit	ENST00000301244	ENST00000420980		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000301244	ENST00000412732		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000301244	ENST00000416611		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000301244	ENST00000414789		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000301244	ENST00000355526		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000301244	ENST00000456296		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-3CDS	ENST00000587090	ENST00000420980		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000587090	ENST00000412732		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000587090	ENST00000416611		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000587090	ENST00000414789		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000587090	ENST00000355526		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-5UTR	ENST00000587090	ENST00000456296		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000454580	ENST00000420980		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000454580	ENST00000412732		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000454580	ENST00000416611		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000454580	ENST00000414789		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000454580	ENST00000355526		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000454580	ENST00000456296		TCGA	RV	LUAD	TCGA-50-6594-01A	SPINT2	chr19	38755638	+	DPF1	chr19	38713348	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	LUAD	TCGA-44-3918-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-3UTR	ENST00000358598	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000358598	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358598	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-3UTR	ENST00000392711	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-3UTR	ENST00000392711	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000392711	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-3UTR	ENST00000589228	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-3UTR	ENST00000589228	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
3UTR-intron	ENST00000589228	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000536854	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000536854	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000536854	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000586397	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000586397	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000586397	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000588188	ENST00000318789		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000588188	ENST00000475937		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000493089		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000484350		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000318779		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000491238		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000498215		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000468577		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000588188	ENST00000472382		TCGA	RV	LUAD	TCGA-78-7149-01A	PRKAR1A	chr17	66528899	+	FOXP1	chr3	71007472	-
Frame-shit	ENST00000369005	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000369005	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000369005	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000513429	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000513429	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000513429	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000515273	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000515273	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000515273	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000515603	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000515603	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000515603	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000453444	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000453444	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000453444	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000358010	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000358010	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000358010	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000334433	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
Frame-shit	ENST00000334433	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5CDS-intron	ENST00000334433	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5UTR-3CDS	ENST00000369001	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5UTR-3CDS	ENST00000369001	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5UTR-intron	ENST00000369001	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5UTR-3CDS	ENST00000369000	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5UTR-3CDS	ENST00000369000	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
5UTR-intron	ENST00000369000	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000360561	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000360561	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-intron	ENST00000360561	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000368999	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000368999	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-intron	ENST00000368999	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000369004	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000369004	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-intron	ENST00000369004	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000260733	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000260733	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-intron	ENST00000260733	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000493951	ENST00000304031		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-3CDS	ENST00000493951	ENST00000402541		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
intron-intron	ENST00000493951	ENST00000406618		TCGA	RV	LUAD	TCGA-05-4420-01A	TACC2	chr10	123892249	+	HS1BP3	chr2	20838412	-
In-frame	ENST00000344337	ENST00000496455		TCGA	RV	LUAD	TCGA-78-7147-01A	KPNA1	chr3	122215284	-	GMPS	chr3	155637022	+
In-frame	ENST00000344337	ENST00000295920		TCGA	RV	LUAD	TCGA-78-7147-01A	KPNA1	chr3	122215284	-	GMPS	chr3	155637022	+
5CDS-intron	ENST00000344337	ENST00000476145		TCGA	RV	LUAD	TCGA-78-7147-01A	KPNA1	chr3	122215284	-	GMPS	chr3	155637022	+
intron-3CDS	ENST00000466923	ENST00000496455		TCGA	RV	LUAD	TCGA-78-7147-01A	KPNA1	chr3	122215284	-	GMPS	chr3	155637022	+
intron-3CDS	ENST00000466923	ENST00000295920		TCGA	RV	LUAD	TCGA-78-7147-01A	KPNA1	chr3	122215284	-	GMPS	chr3	155637022	+
intron-intron	ENST00000466923	ENST00000476145		TCGA	RV	LUAD	TCGA-78-7147-01A	KPNA1	chr3	122215284	-	GMPS	chr3	155637022	+
In-frame	ENST00000544260	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000544260	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000544260	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000544260	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000544260	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000544260	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000544260	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000381869	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000381861	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
Frame-shit	ENST00000262102	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
In-frame	ENST00000519263	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000400046	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000297488	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000518713	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000398056		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000522444		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000398054		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000381840		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000381841		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000427924		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
intron-3CDS	ENST00000381862	ENST00000518650		TCGA	RV	LUAD	TCGA-55-8094-01A	MTUS1	chr8	17570723	-	FGL1	chr8	17726513	-
5UTR-3CDS	ENST00000229195	ENST00000247833		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000378815		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000325555		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000483530		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000550536		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000362025		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000551641		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000553099		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000229195	ENST00000550847		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-3CDS	ENST00000418359	ENST00000247833		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000378815		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000325555		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000483530		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000550536		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000362025		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000551641		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000553099		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000418359	ENST00000550847		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-3CDS	ENST00000548230	ENST00000247833		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000378815		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000325555		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000483530		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000550536		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000362025		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000551641		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000553099		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000548230	ENST00000550847		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-3CDS	ENST00000551483	ENST00000247833		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000378815		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000325555		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000483530		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000550536		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000362025		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000551641		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000553099		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551483	ENST00000550847		TCGA	RV	LUAD	TCGA-75-5122-01A	CNOT2	chr12	70637260	+	RAB3IP	chr12	70206744	+
In-frame	ENST00000361204	ENST00000398250		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
In-frame	ENST00000361204	ENST00000439221		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000361204	ENST00000398248		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000361204	ENST00000541332		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000361204	ENST00000369073		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000361204	ENST00000496437		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
intron-3CDS	ENST00000491541	ENST00000398250		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
intron-3CDS	ENST00000491541	ENST00000439221		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
intron-intron	ENST00000491541	ENST00000398248		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
intron-intron	ENST00000491541	ENST00000541332		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
intron-intron	ENST00000491541	ENST00000369073		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
intron-intron	ENST00000491541	ENST00000496437		TCGA	RV	LUAD	TCGA-97-8175-01A	SREBF2	chr22	42229362	+	PPAPDC1A	chr10	122334643	+
Frame-shit	ENST00000435504	ENST00000263736		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
Frame-shit	ENST00000435504	ENST00000535761		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5CDS-intron	ENST00000435504	ENST00000490133		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5UTR-3CDS	ENST00000336112	ENST00000263736		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5UTR-3CDS	ENST00000336112	ENST00000535761		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5UTR-intron	ENST00000336112	ENST00000490133		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5UTR-3CDS	ENST00000272341	ENST00000263736		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5UTR-3CDS	ENST00000272341	ENST00000535761		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
5UTR-intron	ENST00000272341	ENST00000490133		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
intron-3CDS	ENST00000404843	ENST00000263736		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
intron-3CDS	ENST00000404843	ENST00000535761		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
intron-intron	ENST00000404843	ENST00000490133		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
intron-3CDS	ENST00000497092	ENST00000263736		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
intron-3CDS	ENST00000497092	ENST00000535761		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
intron-intron	ENST00000497092	ENST00000490133		TCGA	RV	LUAD	TCGA-44-7670-01A	ASXL2	chr2	26101035	-	SRBD1	chr2	45715470	-
Frame-shit	ENST00000288235	ENST00000267859		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
5CDS-intron	ENST00000288235	ENST00000478981		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
5CDS-intron	ENST00000288235	ENST00000607373		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
5CDS-intron	ENST00000288235	ENST00000415213		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
intron-3CDS	ENST00000558814	ENST00000267859		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
intron-intron	ENST00000558814	ENST00000478981		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
intron-intron	ENST00000558814	ENST00000607373		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
intron-intron	ENST00000558814	ENST00000415213		TCGA	RV	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	BNIP2	chr15	59963513	-
5UTR-3CDS	ENST00000357430	ENST00000369409		TCGA	RV	LUAD	TCGA-69-7979-01A	ACSL3	chr2	223725976	+	PHGDH	chr1	120263793	+
5UTR-3CDS	ENST00000357430	ENST00000369407		TCGA	RV	LUAD	TCGA-69-7979-01A	ACSL3	chr2	223725976	+	PHGDH	chr1	120263793	+
5UTR-intron	ENST00000357430	ENST00000482968		TCGA	RV	LUAD	TCGA-69-7979-01A	ACSL3	chr2	223725976	+	PHGDH	chr1	120263793	+
5UTR-3CDS	ENST00000392066	ENST00000369409		TCGA	RV	LUAD	TCGA-69-7979-01A	ACSL3	chr2	223725976	+	PHGDH	chr1	120263793	+
5UTR-3CDS	ENST00000392066	ENST00000369407		TCGA	RV	LUAD	TCGA-69-7979-01A	ACSL3	chr2	223725976	+	PHGDH	chr1	120263793	+
5UTR-intron	ENST00000392066	ENST00000482968		TCGA	RV	LUAD	TCGA-69-7979-01A	ACSL3	chr2	223725976	+	PHGDH	chr1	120263793	+
5CDS-3UTR	ENST00000455385	ENST00000468877		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000455385	ENST00000432161		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000455385	ENST00000411726		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000455385	ENST00000242375		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000468877		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000432161		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000411726		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000242375		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000468877		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000432161		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000411726		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000242375		TCGA	RV	LUAD	TCGA-05-4398-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
In-frame	ENST00000355899	ENST00000397558		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000355899	ENST00000446727		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000355899	ENST00000257583		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000355899	ENST00000546857		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
In-frame	ENST00000537301	ENST00000397558		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000537301	ENST00000446727		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000537301	ENST00000257583		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000537301	ENST00000546857		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
In-frame	ENST00000289290	ENST00000397558		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000289290	ENST00000446727		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000289290	ENST00000257583		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000289290	ENST00000546857		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
In-frame	ENST00000420625	ENST00000397558		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000420625	ENST00000446727		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000420625	ENST00000257583		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000420625	ENST00000546857		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
In-frame	ENST00000539310	ENST00000397558		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000539310	ENST00000446727		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000539310	ENST00000257583		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5CDS-intron	ENST00000539310	ENST00000546857		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5UTR-3CDS	ENST00000543070	ENST00000397558		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5UTR-intron	ENST00000543070	ENST00000446727		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5UTR-intron	ENST00000543070	ENST00000257583		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
5UTR-intron	ENST00000543070	ENST00000546857		TCGA	RV	LUAD	TCGA-05-4427-01A	PLS3	chrX	114874815	+	CCDC64	chr12	120499514	+
In-frame	ENST00000369927	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000369927	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000369927	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000346249	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000346249	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000346249	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000348257	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000348257	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000348257	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000352482	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000352482	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000352482	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000358548	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000358548	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000358548	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000351424	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000351424	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000351424	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000217121	ENST00000402685		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000217121	ENST00000539469		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000217121	ENST00000298919		TCGA	RV	LUAD	TCGA-55-8087-01A	TPD52L2	chr20	62500794	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000308664	ENST00000552912		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
In-frame	ENST00000308664	ENST00000242591		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5CDS-intron	ENST00000308664	ENST00000361948		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5CDS-intron	ENST00000308664	ENST00000549009		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
In-frame	ENST00000395494	ENST00000552912		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
In-frame	ENST00000395494	ENST00000242591		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5CDS-intron	ENST00000395494	ENST00000361948		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5CDS-intron	ENST00000395494	ENST00000549009		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
In-frame	ENST00000539276	ENST00000552912		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
In-frame	ENST00000539276	ENST00000242591		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5CDS-intron	ENST00000539276	ENST00000361948		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5CDS-intron	ENST00000539276	ENST00000549009		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
intron-3CDS	ENST00000550248	ENST00000552912		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
intron-3CDS	ENST00000550248	ENST00000242591		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
intron-intron	ENST00000550248	ENST00000361948		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
intron-intron	ENST00000550248	ENST00000549009		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5UTR-3CDS	ENST00000552636	ENST00000552912		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5UTR-3CDS	ENST00000552636	ENST00000242591		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5UTR-intron	ENST00000552636	ENST00000361948		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
5UTR-intron	ENST00000552636	ENST00000549009		TCGA	RV	LUAD	TCGA-78-7161-01A	ATP2A2	chr12	110720600	+	IFT81	chr12	110628725	+
Frame-shit	ENST00000456426	ENST00000230588		TCGA	RV	LUAD	TCGA-91-6840-01A	GPR116	chr6	46832779	-	MEP1A	chr6	46802315	+
Frame-shit	ENST00000283296	ENST00000230588		TCGA	RV	LUAD	TCGA-91-6840-01A	GPR116	chr6	46832779	-	MEP1A	chr6	46802315	+
Frame-shit	ENST00000362015	ENST00000230588		TCGA	RV	LUAD	TCGA-91-6840-01A	GPR116	chr6	46832779	-	MEP1A	chr6	46802315	+
Frame-shit	ENST00000265417	ENST00000230588		TCGA	RV	LUAD	TCGA-91-6840-01A	GPR116	chr6	46832779	-	MEP1A	chr6	46802315	+
Frame-shit	ENST00000545669	ENST00000230588		TCGA	RV	LUAD	TCGA-91-6840-01A	GPR116	chr6	46832779	-	MEP1A	chr6	46802315	+
intron-3CDS	ENST00000478711	ENST00000230588		TCGA	RV	LUAD	TCGA-91-6840-01A	GPR116	chr6	46832779	-	MEP1A	chr6	46802315	+
In-frame	ENST00000301244	ENST00000591517		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000301244	ENST00000586296		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000301244	ENST00000589130		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000301244	ENST00000396857		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000301244	ENST00000423454		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000301244	ENST00000589002		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
In-frame	ENST00000587090	ENST00000591517		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000587090	ENST00000586296		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000587090	ENST00000589130		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000587090	ENST00000396857		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000587090	ENST00000423454		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000587090	ENST00000589002		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
In-frame	ENST00000454580	ENST00000591517		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000454580	ENST00000586296		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000454580	ENST00000589130		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000454580	ENST00000396857		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000454580	ENST00000423454		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5CDS-intron	ENST00000454580	ENST00000589002		TCGA	RV	LUAD	TCGA-55-A492-01A	SPINT2	chr19	38781215	+	MAP4K1	chr19	39087777	-
5UTR-5UTR	ENST00000547702	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000547702	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000547702	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000547702	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000547702	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-5UTR	ENST00000551295	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000551295	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000551295	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000551295	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000551295	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000547849	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000547849	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000547849	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000547849	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000547849	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000347616	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000347616	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000347616	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000347616	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000347616	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000348761	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000348761	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000348761	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000348761	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000348761	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000550305	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000550305	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000550305	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000550305	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000550305	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000360099	ENST00000393330		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000360099	ENST00000247829		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000360099	ENST00000546561		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000360099	ENST00000552128		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000360099	ENST00000552786		TCGA	RV	LUAD	TCGA-49-4501-01A	CNTN1	chr12	41086394	+	TSPAN8	chr12	71676599	-
In-frame	ENST00000276416	ENST00000256404		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5CDS-intron	ENST00000276416	ENST00000521284		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5UTR-3CDS	ENST00000519513	ENST00000256404		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5UTR-intron	ENST00000519513	ENST00000521284		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5UTR-3CDS	ENST00000399977	ENST00000256404		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5UTR-intron	ENST00000399977	ENST00000521284		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
intron-3CDS	ENST00000519335	ENST00000256404		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
intron-intron	ENST00000519335	ENST00000521284		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
In-frame	ENST00000520292	ENST00000256404		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5CDS-intron	ENST00000520292	ENST00000521284		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
intron-3CDS	ENST00000522268	ENST00000256404		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
intron-intron	ENST00000522268	ENST00000521284		TCGA	RV	LUAD	TCGA-MN-A4N1-01A	BIN3	chr8	22502268	-	PEBP4	chr8	22571049	-
5CDS-intron	ENST00000371666	ENST00000371822		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-intron	ENST00000371666	ENST00000254029		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-intron	ENST00000371666	ENST00000371825		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-3UTR	ENST00000371666	ENST00000493448		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-intron	ENST00000371642	ENST00000371822		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-intron	ENST00000371642	ENST00000254029		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-intron	ENST00000371642	ENST00000371825		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5CDS-3UTR	ENST00000371642	ENST00000493448		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-intron	ENST00000481868	ENST00000371822		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-intron	ENST00000481868	ENST00000254029		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-intron	ENST00000481868	ENST00000371825		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-3UTR	ENST00000481868	ENST00000493448		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-intron	ENST00000371637	ENST00000371822		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-intron	ENST00000371637	ENST00000254029		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-intron	ENST00000371637	ENST00000371825		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
intron-3UTR	ENST00000371637	ENST00000493448		TCGA	RV	LUAD	TCGA-91-8499-01A	IL13RA1	chrX	117875119	+	WDR44	chrX	117521303	+
5UTR-3CDS	ENST00000315579	ENST00000261405		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
5UTR-intron	ENST00000315579	ENST00000572068		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
5UTR-intron	ENST00000315579	ENST00000545906		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
5UTR-3CDS	ENST00000545962	ENST00000261405		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
5UTR-intron	ENST00000545962	ENST00000572068		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
5UTR-intron	ENST00000545962	ENST00000545906		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
intron-3CDS	ENST00000542492	ENST00000261405		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
intron-intron	ENST00000542492	ENST00000572068		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
intron-intron	ENST00000542492	ENST00000545906		TCGA	RV	LUAD	TCGA-55-1596-01A	NCAPD2	chr12	6603320	+	VWF	chr12	6059049	-
intron-intron	ENST00000419304	ENST00000233057		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419304	ENST00000395127		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000419304	ENST00000405334		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000419572	ENST00000233057		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000419572	ENST00000395127		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000419572	ENST00000405334		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000401412	ENST00000233057		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000401412	ENST00000395127		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000401412	ENST00000405334		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000486219	ENST00000233057		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000486219	ENST00000395127		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000486219	ENST00000405334		TCGA	RV	LUAD	TCGA-NJ-A55O-01A	AGR2	chr7	16832266	-	EIF2AK2	chr2	37342384	-
intron-3CDS	ENST00000467021	ENST00000368124		TCGA	RV	LUAD	TCGA-05-4432-01A	TADA1	chr1	166838682	-	CADM3	chr1	159169541	+
intron-3CDS	ENST00000467021	ENST00000368125		TCGA	RV	LUAD	TCGA-05-4432-01A	TADA1	chr1	166838682	-	CADM3	chr1	159169541	+
intron-3UTR	ENST00000467021	ENST00000497636		TCGA	RV	LUAD	TCGA-05-4432-01A	TADA1	chr1	166838682	-	CADM3	chr1	159169541	+
In-frame	ENST00000367874	ENST00000368124		TCGA	RV	LUAD	TCGA-05-4432-01A	TADA1	chr1	166838682	-	CADM3	chr1	159169541	+
In-frame	ENST00000367874	ENST00000368125		TCGA	RV	LUAD	TCGA-05-4432-01A	TADA1	chr1	166838682	-	CADM3	chr1	159169541	+
5CDS-3UTR	ENST00000367874	ENST00000497636		TCGA	RV	LUAD	TCGA-05-4432-01A	TADA1	chr1	166838682	-	CADM3	chr1	159169541	+
In-frame	ENST00000264741	ENST00000397109		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
In-frame	ENST00000264741	ENST00000337354		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
In-frame	ENST00000264741	ENST00000350697		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
In-frame	ENST00000264741	ENST00000397117		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
In-frame	ENST00000264741	ENST00000383801		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
5CDS-intron	ENST00000264741	ENST00000492602		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
intron-3CDS	ENST00000422441	ENST00000397109		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
intron-3CDS	ENST00000422441	ENST00000337354		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
intron-3CDS	ENST00000422441	ENST00000350697		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
intron-3CDS	ENST00000422441	ENST00000397117		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
intron-3CDS	ENST00000422441	ENST00000383801		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
intron-intron	ENST00000422441	ENST00000492602		TCGA	RV	LUAD	TCGA-MP-A4TK-01A	ITGA9	chr3	37792060	+	SEC13	chr3	10347376	-
5CDS-3UTR	ENST00000293618	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000293618	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000293618	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000429001	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000429001	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000429001	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000398473	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000398473	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000398473	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000518444	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000518444	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000518444	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000347328	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000347328	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000347328	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000522085	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000522085	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000522085	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000518561	ENST00000547990		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000518561	ENST00000546809		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000518561	ENST00000308796		TCGA	RV	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55248900	+
5UTR-3CDS	ENST00000394258	ENST00000355112		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
5UTR-3CDS	ENST00000394258	ENST00000560509		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
5UTR-3UTR	ENST00000394258	ENST00000560136		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
5UTR-3CDS	ENST00000555155	ENST00000355112		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
5UTR-3CDS	ENST00000555155	ENST00000560509		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
5UTR-3UTR	ENST00000555155	ENST00000560136		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
3UTR-3CDS	ENST00000556774	ENST00000355112		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
3UTR-3CDS	ENST00000556774	ENST00000560509		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
3UTR-3UTR	ENST00000556774	ENST00000560136		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
intron-3CDS	ENST00000556618	ENST00000355112		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
intron-3CDS	ENST00000556618	ENST00000560509		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
intron-3UTR	ENST00000556618	ENST00000560136		TCGA	RV	LUAD	TCGA-38-4630-01A	RCCD1	chr15	91498178	+	BLM	chr15	91326052	+
5CDS-intron	ENST00000309311	ENST00000398158		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000309311	ENST00000398165		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000309311	ENST00000359624		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000309311	ENST00000352178		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000309311	ENST00000398168		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000309311	ENST00000544202		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000309311	ENST00000470912		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000398158		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000398165		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000359624		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000352178		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000398168		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000544202		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
intron-intron	ENST00000600720	ENST00000470912		TCGA	RV	LUAD	TCGA-86-A4D0-01A	EEF2	chr19	3976055	-	CBS	chr21	44476011	-
5UTR-3CDS	ENST00000360458	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-intron	ENST00000360458	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-3CDS	ENST00000422154	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-intron	ENST00000422154	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
intron-3CDS	ENST00000451301	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
intron-intron	ENST00000451301	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-3CDS	ENST00000433176	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-intron	ENST00000433176	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-3CDS	ENST00000423833	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-intron	ENST00000423833	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-3CDS	ENST00000441076	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
5UTR-intron	ENST00000441076	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
intron-3CDS	ENST00000492116	ENST00000372617		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
intron-intron	ENST00000492116	ENST00000469567		TCGA	RV	LUAD	TCGA-44-7660-01A	MORF4L2	chrX	102933427	-	GLRA4	chrX	102974199	-
Frame-shit	ENST00000409979	ENST00000304593		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000476924		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000353339		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000354503		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000409565		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000409616		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000337110		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000524634		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000349901		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000392059		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
Frame-shit	ENST00000310078	ENST00000304593		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000476924		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000353339		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000354503		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000409565		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000409616		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000337110		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000524634		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000349901		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000392059		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
Frame-shit	ENST00000409315	ENST00000304593		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000476924		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000353339		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000354503		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000409565		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000409616		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000337110		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000524634		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000349901		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000392059		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
Frame-shit	ENST00000373671	ENST00000304593		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000476924		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000353339		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000354503		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000409565		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000409616		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000337110		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000524634		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000349901		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000392059		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
Frame-shit	ENST00000409171	ENST00000304593		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000476924		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000353339		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000354503		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000409565		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000409616		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000337110		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000524634		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000349901		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000392059		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3CDS	ENST00000486932	ENST00000304593		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000476924		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000353339		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000354503		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000409565		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000409616		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000337110		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000524634		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000349901		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000392059		TCGA	RV	LUAD	TCGA-62-A471-01A	AGFG1	chr2	228389631	+	MFF	chr2	228220393	+
In-frame	ENST00000374379	ENST00000361548		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
In-frame	ENST00000374379	ENST00000342072		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
In-frame	ENST00000374379	ENST00000350501		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
5CDS-intron	ENST00000374379	ENST00000530984		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
5CDS-intron	ENST00000374379	ENST00000356046		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
5CDS-intron	ENST00000374379	ENST00000236255		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
3UTR-3CDS	ENST00000497755	ENST00000361548		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
3UTR-3CDS	ENST00000497755	ENST00000342072		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
3UTR-3CDS	ENST00000497755	ENST00000350501		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
3UTR-intron	ENST00000497755	ENST00000530984		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
3UTR-intron	ENST00000497755	ENST00000356046		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
3UTR-intron	ENST00000497755	ENST00000236255		TCGA	RV	LUAD	TCGA-38-4630-01A	CLIC4	chr1	25072116	+	GRHL3	chr1	24671387	+
5UTR-3CDS	ENST00000522684	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000522684	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000522684	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000522684	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000535192	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000535192	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000535192	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000535192	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519465	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519465	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519465	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519465	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517887	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517887	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517887	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000517887	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000521059	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000521059	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000521059	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000521059	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000395218	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000395218	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000395218	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000395218	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000538769	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000538769	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000538769	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000538769	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000340930	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000340930	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000340930	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000340930	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519419	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519419	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519419	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519419	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000430260	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000430260	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000430260	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000430260	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000519881	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000519881	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000519881	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000519881	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520892	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520892	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520892	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000520892	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519635	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519635	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519635	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519635	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517712	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517712	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517712	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000517712	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000522950	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000522950	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000522950	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000522950	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520151	ENST00000389327		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520151	ENST00000389328		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520151	ENST00000438773		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000520151	ENST00000522504		TCGA	RV	LUAD	TCGA-55-8511-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	140744445	-
Frame-shit	ENST00000400590	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5CDS-intron	ENST00000400590	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
Frame-shit	ENST00000320220	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5CDS-intron	ENST00000320220	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
Frame-shit	ENST00000382466	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5CDS-intron	ENST00000382466	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
In-frame	ENST00000542645	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5CDS-intron	ENST00000542645	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
Frame-shit	ENST00000415724	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5CDS-intron	ENST00000415724	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
Frame-shit	ENST00000422251	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5CDS-intron	ENST00000422251	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5UTR-3CDS	ENST00000494731	ENST00000382172		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
5UTR-intron	ENST00000494731	ENST00000469167		TCGA	RV	LUAD	TCGA-93-A4JO-01A	ZDHHC20	chr13	21987791	-	MIPEP	chr13	24330757	-
In-frame	ENST00000262738	ENST00000374213		TCGA	RV	LUAD	TCGA-62-8394-01A	CELSR1	chr22	46859604	-	CD52	chr1	26646662	+
5CDS-intron	ENST00000262738	ENST00000492808		TCGA	RV	LUAD	TCGA-62-8394-01A	CELSR1	chr22	46859604	-	CD52	chr1	26646662	+
In-frame	ENST00000395964	ENST00000374213		TCGA	RV	LUAD	TCGA-62-8394-01A	CELSR1	chr22	46859604	-	CD52	chr1	26646662	+
5CDS-intron	ENST00000395964	ENST00000492808		TCGA	RV	LUAD	TCGA-62-8394-01A	CELSR1	chr22	46859604	-	CD52	chr1	26646662	+
intron-3CDS	ENST00000497509	ENST00000374213		TCGA	RV	LUAD	TCGA-62-8394-01A	CELSR1	chr22	46859604	-	CD52	chr1	26646662	+
intron-intron	ENST00000497509	ENST00000492808		TCGA	RV	LUAD	TCGA-62-8394-01A	CELSR1	chr22	46859604	-	CD52	chr1	26646662	+
Frame-shit	ENST00000327283	ENST00000237500		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000327283	ENST00000581193		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000327283	ENST00000400175		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000327283	ENST00000584539		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000591115	ENST00000237500		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000591115	ENST00000581193		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000591115	ENST00000400175		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000591115	ENST00000584539		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000353319	ENST00000237500		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000353319	ENST00000581193		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000353319	ENST00000400175		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000353319	ENST00000584539		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000309660	ENST00000237500		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000309660	ENST00000581193		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000309660	ENST00000400175		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
Frame-shit	ENST00000309660	ENST00000584539		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000589086	ENST00000237500		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000589086	ENST00000581193		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000589086	ENST00000400175		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000589086	ENST00000584539		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000591497	ENST00000237500		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000591497	ENST00000581193		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000591497	ENST00000400175		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000591497	ENST00000584539		TCGA	RV	LUAD	TCGA-93-A4JP-01A	PTPN2	chr18	12884072	-	MYL12B	chr18	3277251	+
intron-3CDS	ENST00000357232	ENST00000404648		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000357232	ENST00000405164		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000357232	ENST00000336098		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000357232	ENST00000407946		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000339452	ENST00000404648		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000339452	ENST00000405164		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000339452	ENST00000336098		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000339452	ENST00000407946		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000507542	ENST00000404648		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000507542	ENST00000405164		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000507542	ENST00000336098		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
intron-3CDS	ENST00000507542	ENST00000407946		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000456341	ENST00000404648		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000456341	ENST00000405164		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000456341	ENST00000336098		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000456341	ENST00000407946		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000443500	ENST00000404648		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000443500	ENST00000405164		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000443500	ENST00000336098		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
In-frame	ENST00000443500	ENST00000407946		TCGA	RV	LUAD	TCGA-49-6743-01A	DCHS2	chr4	155410456	-	FGG	chr4	155533353	-
Frame-shit	ENST00000369405	ENST00000354655		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369405	ENST00000479936		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369405	ENST00000393081		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369405	ENST00000433418		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369405	ENST00000356116		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369405	ENST00000354273		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-intron	ENST00000369405	ENST00000369410		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
Frame-shit	ENST00000369404	ENST00000354655		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369404	ENST00000479936		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369404	ENST00000393081		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369404	ENST00000433418		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369404	ENST00000356116		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-3UTR	ENST00000369404	ENST00000354273		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-intron	ENST00000369404	ENST00000369410		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-3CDS	ENST00000482410	ENST00000354655		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-3UTR	ENST00000482410	ENST00000479936		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-3UTR	ENST00000482410	ENST00000393081		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-3UTR	ENST00000482410	ENST00000433418		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-3UTR	ENST00000482410	ENST00000356116		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-3UTR	ENST00000482410	ENST00000354273		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
intron-intron	ENST00000482410	ENST00000369410		TCGA	RV	LUAD	TCGA-44-7662-01A	ZDHHC6	chr10	114200292	-	ACSL5	chr10	114168180	+
5CDS-intron	ENST00000291527	ENST00000408982		TCGA	RV	LUAD	TCGA-97-7552-01A	TFF1	chr21	43782391	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000291527	ENST00000262477		TCGA	RV	LUAD	TCGA-97-7552-01A	TFF1	chr21	43782391	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000291527	ENST00000537505		TCGA	RV	LUAD	TCGA-97-7552-01A	TFF1	chr21	43782391	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000291527	ENST00000546142		TCGA	RV	LUAD	TCGA-97-7552-01A	TFF1	chr21	43782391	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000291527	ENST00000341923		TCGA	RV	LUAD	TCGA-97-7552-01A	TFF1	chr21	43782391	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000291527	ENST00000570487		TCGA	RV	LUAD	TCGA-97-7552-01A	TFF1	chr21	43782391	-	RABEP1	chr17	5283828	+
In-frame	ENST00000302516	ENST00000289746		TCGA	RV	LUAD	TCGA-44-7667-01A	SF3B3	chr16	70578436	+	CDH15	chr16	89245824	+
5CDS-3UTR	ENST00000302516	ENST00000521087		TCGA	RV	LUAD	TCGA-44-7667-01A	SF3B3	chr16	70578436	+	CDH15	chr16	89245824	+
intron-intron	ENST00000532456	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000532456	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000532456	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000539648	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000539648	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000539648	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000528499	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000528499	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000528499	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000263574	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000263574	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000263574	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345598	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345598	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000345598	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000338167	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000338167	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000338167	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000278756	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000278756	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000278756	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000543137	ENST00000233057		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000543137	ENST00000395127		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000543137	ENST00000405334		TCGA	RV	LUAD	TCGA-75-7025-01A	APLP2	chr11	130014699	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000253719	ENST00000484427		TCGA	RV	LUAD	TCGA-55-8206-01A	NAPSA	chr19	50861735	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000253719	ENST00000371764		TCGA	RV	LUAD	TCGA-55-8206-01A	NAPSA	chr19	50861735	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000377795	ENST00000368508		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000377795	ENST00000368507		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000353334	ENST00000368508		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000353334	ENST00000368507		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000524315	ENST00000368508		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000524315	ENST00000368507		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000009530	ENST00000368508		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000009530	ENST00000368507		TCGA	RV	LUAD	TCGA-64-1680-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000265753	ENST00000445912		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000252034		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000358929		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000320492		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000414324		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000380562		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000380575		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000380584		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000458204		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000357036		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000429192		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000380553		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000380576		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000265753	ENST00000320399		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
5CDS-intron	ENST00000265753	ENST00000466878		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000445912		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000252034		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000358929		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000320492		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000414324		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000380562		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000380575		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000380584		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000458204		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000357036		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000429192		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000380553		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000380576		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-3CDS	ENST00000353999	ENST00000320399		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
intron-intron	ENST00000353999	ENST00000466878		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000445912		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000252034		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000358929		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000320492		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000414324		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000380562		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000380575		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000380584		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000458204		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000357036		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000429192		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000380553		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000380576		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-3CDS	ENST00000495187	ENST00000320399		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
3UTR-intron	ENST00000495187	ENST00000466878		TCGA	RV	LUAD	TCGA-38-4630-01A	EIF4H	chr7	73604636	+	ELN	chr7	73449694	+
In-frame	ENST00000337147	ENST00000368508		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000337147	ENST00000368507		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
Frame-shit	ENST00000367075	ENST00000368508		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
Frame-shit	ENST00000367075	ENST00000368507		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000392177	ENST00000368508		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000392177	ENST00000368507		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000476189	ENST00000368508		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000476189	ENST00000368507		TCGA	RV	LUAD	TCGA-NJ-A7XG-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000313654	ENST00000361524		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000313654	ENST00000584787		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000313654	ENST00000538137		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000313654	ENST00000579111		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
In-frame	ENST00000399516	ENST00000361524		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000399516	ENST00000584787		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000399516	ENST00000538137		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000399516	ENST00000579111		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
In-frame	ENST00000269217	ENST00000361524		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000269217	ENST00000584787		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000269217	ENST00000538137		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000269217	ENST00000579111		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
In-frame	ENST00000587184	ENST00000361524		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000587184	ENST00000584787		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000587184	ENST00000538137		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5CDS-5UTR	ENST00000587184	ENST00000579111		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
3UTR-3CDS	ENST00000588770	ENST00000361524		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
3UTR-5UTR	ENST00000588770	ENST00000584787		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
3UTR-5UTR	ENST00000588770	ENST00000538137		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
3UTR-5UTR	ENST00000588770	ENST00000579111		TCGA	RV	LUAD	TCGA-75-6214-01A	LAMA3	chr18	21529888	+	ZNF521	chr18	22807661	-
5UTR-3CDS	ENST00000354618	ENST00000401084		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000354618	ENST00000264203		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000354618	ENST00000375142		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000354618	ENST00000433834		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000354618	ENST00000264202		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-5UTR	ENST00000354618	ENST00000482808		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-5UTR	ENST00000354618	ENST00000375144		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000469141	ENST00000401084		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000469141	ENST00000264203		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000469141	ENST00000375142		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000469141	ENST00000433834		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-3CDS	ENST00000469141	ENST00000264202		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-5UTR	ENST00000469141	ENST00000482808		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
5UTR-5UTR	ENST00000469141	ENST00000375144		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-3CDS	ENST00000466743	ENST00000401084		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-3CDS	ENST00000466743	ENST00000264203		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-3CDS	ENST00000466743	ENST00000375142		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-3CDS	ENST00000466743	ENST00000433834		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-3CDS	ENST00000466743	ENST00000264202		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-5UTR	ENST00000466743	ENST00000482808		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
intron-5UTR	ENST00000466743	ENST00000375144		TCGA	RV	LUAD	TCGA-49-4507-01A	THRAP3	chr1	36690106	+	CAPZB	chr1	19705147	-
In-frame	ENST00000337147	ENST00000368508		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000337147	ENST00000368507		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
Frame-shit	ENST00000367075	ENST00000368508		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
Frame-shit	ENST00000367075	ENST00000368507		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000392177	ENST00000368508		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
In-frame	ENST00000392177	ENST00000368507		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000476189	ENST00000368508		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000476189	ENST00000368507		TCGA	RV	LUAD	TCGA-55-6986-01A	EZR	chr6	159191796	-	ROS1	chr6	117645578	-
5UTR-3CDS	ENST00000488834	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
5UTR-3CDS	ENST00000488834	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000474597	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000474597	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000244763	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000244763	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000397511	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000397511	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
intron-3CDS	ENST00000534851	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
intron-3CDS	ENST00000534851	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000489567	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000489567	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000479365	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000479365	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000462112	ENST00000324331		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
In-frame	ENST00000462112	ENST00000274680		TCGA	RV	LUAD	TCGA-62-A46S-01A	SSR1	chr6	7303783	-	FARS2	chr6	5545413	+
5UTR-3CDS	ENST00000415807	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-3CDS	ENST00000415807	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-intron	ENST00000415807	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000336824	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000336824	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000336824	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000416957	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000416957	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000416957	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-3CDS	ENST00000392699	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-3CDS	ENST00000392699	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-intron	ENST00000392699	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-3CDS	ENST00000421757	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-3CDS	ENST00000421757	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5UTR-intron	ENST00000421757	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000423424	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000423424	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000423424	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000476794	ENST00000355849		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000476794	ENST00000520981		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000476794	ENST00000522578		TCGA	RV	LUAD	TCGA-78-7147-01A	FNDC3B	chr3	171757561	+	KHDRBS3	chr8	136619198	+
5CDS-intron	ENST00000199764	ENST00000484427		TCGA	RV	LUAD	TCGA-71-6725-01A	CEACAM6	chr19	42276113	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000199764	ENST00000371764		TCGA	RV	LUAD	TCGA-71-6725-01A	CEACAM6	chr19	42276113	+	DDX27	chr20	47849303	+
intron-3UTR	ENST00000381395	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381395	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000381395	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381395	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381406	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381406	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000381406	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381406	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000416167	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000416167	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000416167	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000416167	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
5CDS-3UTR	ENST00000300632	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
5CDS-3UTR	ENST00000300632	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
5CDS-intron	ENST00000300632	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
5CDS-3UTR	ENST00000300632	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000434045	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000434045	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000434045	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000434045	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381392	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381392	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000381392	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381392	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381389	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381389	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000381389	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000381389	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000418738	ENST00000378883		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000418738	ENST00000378896		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-intron	ENST00000418738	ENST00000378886		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3UTR	ENST00000418738	ENST00000265187		TCGA	RV	LUAD	TCGA-50-5946-01A	IGF2	chr11	2150351	-	MCM8	chr20	5975386	+
intron-3CDS	ENST00000377795	ENST00000368508		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000377795	ENST00000368507		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000353334	ENST00000368508		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000353334	ENST00000368507		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000524315	ENST00000368508		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
intron-3CDS	ENST00000524315	ENST00000368507		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000009530	ENST00000368508		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
In-frame	ENST00000009530	ENST00000368507		TCGA	RV	LUAD	TCGA-86-8278-01A	CD74	chr5	149784243	-	ROS1	chr6	117645578	-
5CDS-intron	ENST00000253719	ENST00000513761		TCGA	RV	LUAD	TCGA-50-8460-01A	NAPSA	chr19	50861735	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000253719	ENST00000347613		TCGA	RV	LUAD	TCGA-50-8460-01A	NAPSA	chr19	50861735	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000253719	ENST00000360642		TCGA	RV	LUAD	TCGA-50-8460-01A	NAPSA	chr19	50861735	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000253719	ENST00000504131		TCGA	RV	LUAD	TCGA-50-8460-01A	NAPSA	chr19	50861735	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000253719	ENST00000506924		TCGA	RV	LUAD	TCGA-50-8460-01A	NAPSA	chr19	50861735	-	CLCN3	chr4	170623929	+
Frame-shit	ENST00000394287	ENST00000430627		TCGA	RV	LUAD	TCGA-95-7947-01A	MED1	chr17	37607291	-	CDK12	chr17	37627132	+
Frame-shit	ENST00000394287	ENST00000447079		TCGA	RV	LUAD	TCGA-95-7947-01A	MED1	chr17	37607291	-	CDK12	chr17	37627132	+
5CDS-intron	ENST00000394287	ENST00000559545		TCGA	RV	LUAD	TCGA-95-7947-01A	MED1	chr17	37607291	-	CDK12	chr17	37627132	+
Frame-shit	ENST00000300651	ENST00000430627		TCGA	RV	LUAD	TCGA-95-7947-01A	MED1	chr17	37607291	-	CDK12	chr17	37627132	+
Frame-shit	ENST00000300651	ENST00000447079		TCGA	RV	LUAD	TCGA-95-7947-01A	MED1	chr17	37607291	-	CDK12	chr17	37627132	+
5CDS-intron	ENST00000300651	ENST00000559545		TCGA	RV	LUAD	TCGA-95-7947-01A	MED1	chr17	37607291	-	CDK12	chr17	37627132	+
Frame-shit	ENST00000397752	ENST00000265441		TCGA	RV	LUAD	TCGA-44-7662-01A	MET	chr7	116417523	+	WNT2	chr7	116937930	-
Frame-shit	ENST00000318493	ENST00000265441		TCGA	RV	LUAD	TCGA-44-7662-01A	MET	chr7	116417523	+	WNT2	chr7	116937930	-
intron-3CDS	ENST00000436117	ENST00000265441		TCGA	RV	LUAD	TCGA-44-7662-01A	MET	chr7	116417523	+	WNT2	chr7	116937930	-
intron-3CDS	ENST00000495962	ENST00000265441		TCGA	RV	LUAD	TCGA-44-7662-01A	MET	chr7	116417523	+	WNT2	chr7	116937930	-
5UTR-3CDS	ENST00000539704	ENST00000265441		TCGA	RV	LUAD	TCGA-44-7662-01A	MET	chr7	116417523	+	WNT2	chr7	116937930	-
Frame-shit	ENST00000496817	ENST00000361866		TCGA	RV	LUAD	TCGA-NJ-A4YP-01A	S100A6	chr1	153507075	-	COL6A1	chr21	47407069	+
5CDS-intron	ENST00000496817	ENST00000498614		TCGA	RV	LUAD	TCGA-NJ-A4YP-01A	S100A6	chr1	153507075	-	COL6A1	chr21	47407069	+
Frame-shit	ENST00000368719	ENST00000361866		TCGA	RV	LUAD	TCGA-NJ-A4YP-01A	S100A6	chr1	153507075	-	COL6A1	chr21	47407069	+
5CDS-intron	ENST00000368719	ENST00000498614		TCGA	RV	LUAD	TCGA-NJ-A4YP-01A	S100A6	chr1	153507075	-	COL6A1	chr21	47407069	+
Frame-shit	ENST00000368720	ENST00000361866		TCGA	RV	LUAD	TCGA-NJ-A4YP-01A	S100A6	chr1	153507075	-	COL6A1	chr21	47407069	+
5CDS-intron	ENST00000368720	ENST00000498614		TCGA	RV	LUAD	TCGA-NJ-A4YP-01A	S100A6	chr1	153507075	-	COL6A1	chr21	47407069	+
In-frame	ENST00000367816	ENST00000367854		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000367816	ENST00000537350		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000367816	ENST00000472038		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000367815	ENST00000367854		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000367815	ENST00000537350		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000367815	ENST00000472038		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000499679	ENST00000367854		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000499679	ENST00000537350		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000499679	ENST00000472038		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000367813	ENST00000367854		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
In-frame	ENST00000367813	ENST00000537350		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
5CDS-intron	ENST00000367813	ENST00000472038		TCGA	RV	LUAD	TCGA-86-8281-01A	ATP1B1	chr1	169099328	+	RCSD1	chr1	167653137	+
Frame-shit	ENST00000340635	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000360047	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000507116	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
In-frame	ENST00000502484	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000546160	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
intron-3CDS	ENST00000502575	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000358923	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000503258	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000405755	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
intron-3CDS	ENST00000317118	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
intron-3CDS	ENST00000503947	ENST00000299529		TCGA	RV	LUAD	TCGA-86-7713-01A	PDE4D	chr5	58334686	-	CRABP1	chr15	78640269	+
Frame-shit	ENST00000220166	ENST00000558480		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
Frame-shit	ENST00000220166	ENST00000419573		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
5CDS-5UTR	ENST00000220166	ENST00000560334		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
5CDS-intron	ENST00000220166	ENST00000394745		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
intron-3CDS	ENST00000534533	ENST00000558480		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
intron-3CDS	ENST00000534533	ENST00000419573		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
intron-5UTR	ENST00000534533	ENST00000560334		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
intron-intron	ENST00000534533	ENST00000394745		TCGA	RV	LUAD	TCGA-86-8056-01A	CTSH	chr15	79237233	-	RASGRF1	chr15	79320201	-
Frame-shit	ENST00000295190	ENST00000258381		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
Frame-shit	ENST00000295190	ENST00000358662		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
Frame-shit	ENST00000295190	ENST00000392048		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
Frame-shit	ENST00000295190	ENST00000258382		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
Frame-shit	ENST00000295190	ENST00000540870		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
5CDS-5UTR	ENST00000295190	ENST00000338556		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
5CDS-5UTR	ENST00000295190	ENST00000486146		TCGA	RV	LUAD	TCGA-78-7536-01A	SLC16A14	chr2	230914477	-	SP110	chr2	231076268	-
5CDS-5UTR	ENST00000294785	ENST00000368748		TCGA	RV	LUAD	TCGA-97-A4M3-01A	NCSTN	chr1	160324080	+	SPRR2G	chr1	153122607	-
5CDS-5UTR	ENST00000368063	ENST00000368748		TCGA	RV	LUAD	TCGA-97-A4M3-01A	NCSTN	chr1	160324080	+	SPRR2G	chr1	153122607	-
5CDS-5UTR	ENST00000535857	ENST00000368748		TCGA	RV	LUAD	TCGA-97-A4M3-01A	NCSTN	chr1	160324080	+	SPRR2G	chr1	153122607	-
5CDS-5UTR	ENST00000392212	ENST00000368748		TCGA	RV	LUAD	TCGA-97-A4M3-01A	NCSTN	chr1	160324080	+	SPRR2G	chr1	153122607	-
3UTR-5UTR	ENST00000459963	ENST00000368748		TCGA	RV	LUAD	TCGA-97-A4M3-01A	NCSTN	chr1	160324080	+	SPRR2G	chr1	153122607	-
5CDS-5UTR	ENST00000368065	ENST00000368748		TCGA	RV	LUAD	TCGA-97-A4M3-01A	NCSTN	chr1	160324080	+	SPRR2G	chr1	153122607	-
5CDS-5UTR	ENST00000375370	ENST00000375441		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5CDS-5UTR	ENST00000375370	ENST00000451881		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5CDS-5UTR	ENST00000375370	ENST00000326335		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5CDS-5UTR	ENST00000375370	ENST00000375440		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5CDS-3UTR	ENST00000375370	ENST00000463426		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000538138	ENST00000375441		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000538138	ENST00000451881		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000538138	ENST00000326335		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000538138	ENST00000375440		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-3UTR	ENST00000538138	ENST00000463426		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
3UTR-5UTR	ENST00000465174	ENST00000375441		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
3UTR-5UTR	ENST00000465174	ENST00000451881		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
3UTR-5UTR	ENST00000465174	ENST00000326335		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
3UTR-5UTR	ENST00000465174	ENST00000375440		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
3UTR-3UTR	ENST00000465174	ENST00000463426		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000544902	ENST00000375441		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000544902	ENST00000451881		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000544902	ENST00000326335		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-5UTR	ENST00000544902	ENST00000375440		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
5UTR-3UTR	ENST00000544902	ENST00000463426		TCGA	RV	LUAD	TCGA-55-8620-01A	TFDP1	chr13	114265377	+	CUL4A	chr13	113873259	+
In-frame	ENST00000372733	ENST00000519301		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000520407		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000523079		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000338921		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000356819		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000287845		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000341377		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000287842		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000521670		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000405005		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000520502		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000539990		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000372733	ENST00000523681		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000519301		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000520407		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000523079		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000338921		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000356819		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000287845		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000341377		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000287842		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000521670		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000405005		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000520502		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000539990		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000537976	ENST00000523681		TCGA	RV	LUAD	TCGA-86-7954-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
intron-intron	ENST00000373913	ENST00000216968		TCGA	LD	LUAD	TCGA-05-4244-01A	DLGAP4	chr20	35093770	+	PROCR	chr20	33803696	+
intron-intron	ENST00000401952	ENST00000216968		TCGA	LD	LUAD	TCGA-05-4244-01A	DLGAP4	chr20	35093770	+	PROCR	chr20	33803696	+
intron-intron	ENST00000373907	ENST00000216968		TCGA	LD	LUAD	TCGA-05-4244-01A	DLGAP4	chr20	35093770	+	PROCR	chr20	33803696	+
intron-intron	ENST00000339266	ENST00000216968		TCGA	LD	LUAD	TCGA-05-4244-01A	DLGAP4	chr20	35093770	+	PROCR	chr20	33803696	+
intron-intron	ENST00000475894	ENST00000216968		TCGA	LD	LUAD	TCGA-05-4244-01A	DLGAP4	chr20	35093770	+	PROCR	chr20	33803696	+
intron-intron	ENST00000340491	ENST00000216968		TCGA	LD	LUAD	TCGA-05-4244-01A	DLGAP4	chr20	35093770	+	PROCR	chr20	33803696	+
5CDS-5UTR	ENST00000283558	ENST00000375608		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000283558	ENST00000442652		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000375604		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000397030		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000535094		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000421756		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000375601		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000397036		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000434480		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000423482		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000375597		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000397024		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000480321		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000283558	ENST00000397021		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000375630	ENST00000375608		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000375630	ENST00000442652		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000375604		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000397030		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000535094		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000421756		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000375601		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000397036		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000434480		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000423482		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000375597		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000397024		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000480321		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375630	ENST00000397021		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000487903	ENST00000375608		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000487903	ENST00000442652		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000375604		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000397030		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000535094		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000421756		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000375601		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000397036		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000434480		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000423482		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000375597		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000397024		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000480321		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000487903	ENST00000397021		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000375645	ENST00000375608		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000375645	ENST00000442652		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000375604		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000397030		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000535094		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000421756		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000375601		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000397036		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000434480		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000423482		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000375597		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000397024		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000480321		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-intron	ENST00000375645	ENST00000397021		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-5UTR	ENST00000419448	ENST00000375608		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-5UTR	ENST00000419448	ENST00000442652		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000375604		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000397030		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000535094		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000421756		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000375601		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000397036		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000434480		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000423482		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000375597		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000397024		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000480321		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
intron-intron	ENST00000419448	ENST00000397021		TCGA	LD	LUAD	TCGA-05-4249-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113556513	+
5CDS-5UTR	ENST00000256062	ENST00000360150		TCGA	LD	LUAD	TCGA-05-4250-01A	TMTC1	chr12	29904599	-	ERGIC2	chr12	29524603	-
5CDS-5UTR	ENST00000551659	ENST00000360150		TCGA	LD	LUAD	TCGA-05-4250-01A	TMTC1	chr12	29904599	-	ERGIC2	chr12	29524603	-
5CDS-5UTR	ENST00000552618	ENST00000360150		TCGA	LD	LUAD	TCGA-05-4250-01A	TMTC1	chr12	29904599	-	ERGIC2	chr12	29524603	-
intron-5UTR	ENST00000319685	ENST00000360150		TCGA	LD	LUAD	TCGA-05-4250-01A	TMTC1	chr12	29904599	-	ERGIC2	chr12	29524603	-
5CDS-5UTR	ENST00000539277	ENST00000360150		TCGA	LD	LUAD	TCGA-05-4250-01A	TMTC1	chr12	29904599	-	ERGIC2	chr12	29524603	-
5CDS-5UTR	ENST00000381224	ENST00000360150		TCGA	LD	LUAD	TCGA-05-4250-01A	TMTC1	chr12	29904599	-	ERGIC2	chr12	29524603	-
5CDS-5UTR	ENST00000359867	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000359867	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000359867	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000359867	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000396832	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000396832	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000396832	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000396832	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000400206	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000400206	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000400206	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000400206	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000403904	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000403904	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000403904	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000403904	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000413574	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000413574	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000413574	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000413574	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000405675	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-5UTR	ENST00000405675	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000405675	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5CDS-intron	ENST00000405675	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5UTR-5UTR	ENST00000498529	ENST00000331860		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5UTR-5UTR	ENST00000498529	ENST00000495845		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5UTR-intron	ENST00000498529	ENST00000295367		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
5UTR-intron	ENST00000498529	ENST00000542696		TCGA	LD	LUAD	TCGA-05-4382-01A	CSNK1E	chr22	38694791	-	SPRR3	chr1	152974230	+
intron-intron	ENST00000591289	ENST00000360957		TCGA	LD	LUAD	TCGA-05-4382-01A	ZNF229	chr19	44936397	-	PPP1R13L	chr19	45905382	-
intron-intron	ENST00000591289	ENST00000418234		TCGA	LD	LUAD	TCGA-05-4382-01A	ZNF229	chr19	44936397	-	PPP1R13L	chr19	45905382	-
intron-intron	ENST00000291187	ENST00000360957		TCGA	LD	LUAD	TCGA-05-4382-01A	ZNF229	chr19	44936397	-	PPP1R13L	chr19	45905382	-
intron-intron	ENST00000291187	ENST00000418234		TCGA	LD	LUAD	TCGA-05-4382-01A	ZNF229	chr19	44936397	-	PPP1R13L	chr19	45905382	-
5CDS-intron	ENST00000588931	ENST00000360957		TCGA	LD	LUAD	TCGA-05-4382-01A	ZNF229	chr19	44936397	-	PPP1R13L	chr19	45905382	-
5CDS-intron	ENST00000588931	ENST00000418234		TCGA	LD	LUAD	TCGA-05-4382-01A	ZNF229	chr19	44936397	-	PPP1R13L	chr19	45905382	-
In-frame	ENST00000253413	ENST00000317361		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000253413	ENST00000399767		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000253413	ENST00000399774		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000253413	ENST00000399765		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000253413	ENST00000342111		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000253413	ENST00000551952		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000253413	ENST00000473439		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
In-frame	ENST00000399796	ENST00000317361		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000399796	ENST00000399767		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000399796	ENST00000399774		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000399796	ENST00000399765		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000399796	ENST00000342111		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000399796	ENST00000551952		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000399796	ENST00000473439		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
In-frame	ENST00000399798	ENST00000317361		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000399798	ENST00000399767		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000399798	ENST00000399774		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000399798	ENST00000399765		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000399798	ENST00000342111		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-intron	ENST00000399798	ENST00000551952		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
5CDS-5UTR	ENST00000399798	ENST00000473439		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-3CDS	ENST00000478963	ENST00000317361		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-5UTR	ENST00000478963	ENST00000399767		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-5UTR	ENST00000478963	ENST00000399774		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-intron	ENST00000478963	ENST00000399765		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-intron	ENST00000478963	ENST00000342111		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-intron	ENST00000478963	ENST00000551952		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-5UTR	ENST00000478963	ENST00000473439		TCGA	LD	LUAD	TCGA-05-4389-01A	ATP6V1E1	chr22	18095578	-	BID	chr22	18226779	-
intron-intron	ENST00000504604	ENST00000260184		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000504604	ENST00000511577		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000504604	ENST00000505890		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000504604	ENST00000515088		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000264431	ENST00000260184		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000264431	ENST00000511577		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000264431	ENST00000505890		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
intron-intron	ENST00000264431	ENST00000515088		TCGA	LD	LUAD	TCGA-05-4389-01A	RAPGEF2	chr4	160025383	+	DDX60L	chr4	169458937	-
5UTR-3CDS	ENST00000523638	ENST00000601241		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-5UTR	ENST00000523638	ENST00000595326		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-5UTR	ENST00000523638	ENST00000379204		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-3CDS	ENST00000592282	ENST00000601241		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-5UTR	ENST00000592282	ENST00000595326		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-5UTR	ENST00000592282	ENST00000379204		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-3CDS	ENST00000588993	ENST00000601241		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-5UTR	ENST00000588993	ENST00000595326		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
5UTR-5UTR	ENST00000588993	ENST00000379204		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
intron-3CDS	ENST00000593142	ENST00000601241		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
intron-5UTR	ENST00000593142	ENST00000595326		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
intron-5UTR	ENST00000593142	ENST00000379204		TCGA	LD	LUAD	TCGA-05-4389-01A	ZNF260	chr19	37016057	-	SCGB2B2	chr19	35084504	-
intron-intron	ENST00000512215	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000512215	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000512215	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000512215	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000512215	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394854	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394854	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394854	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394854	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394854	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000323055	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000323055	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000323055	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000323055	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000323055	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394853	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394853	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394853	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394853	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000394853	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000507176	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000507176	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000507176	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000507176	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000507176	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000523694	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000523694	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000523694	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000523694	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000523694	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000510292	ENST00000509081		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000510292	ENST00000264400		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000510292	ENST00000335927		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000510292	ENST00000436139		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
5UTR-intron	ENST00000510292	ENST00000514889		TCGA	LD	LUAD	TCGA-05-4390-01A	PPP3CA	chr4	102030111	-	RASGEF1B	chr4	82524076	-
intron-3CDS	ENST00000383440	ENST00000580170		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000383440	ENST00000332175		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000383440	ENST00000400060		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000383440	ENST00000400053		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000383440	ENST00000444013		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-intron	ENST00000383440	ENST00000578571		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000262126	ENST00000580170		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000262126	ENST00000332175		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000262126	ENST00000400060		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000262126	ENST00000400053		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000262126	ENST00000444013		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-intron	ENST00000262126	ENST00000578571		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000540578	ENST00000580170		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000540578	ENST00000332175		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000540578	ENST00000400060		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000540578	ENST00000400053		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-3CDS	ENST00000540578	ENST00000444013		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
intron-intron	ENST00000540578	ENST00000578571		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000400020	ENST00000580170		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000400020	ENST00000332175		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000400020	ENST00000400060		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000400020	ENST00000400053		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5UTR-3CDS	ENST00000400020	ENST00000444013		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5UTR-intron	ENST00000400020	ENST00000578571		TCGA	LD	LUAD	TCGA-05-4395-01A	ANKRD12	chr18	9137871	+	PTPRM	chr18	8394474	+
5CDS-intron	ENST00000356607	ENST00000377093		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000263934		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000377086		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000377083		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000377081		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000465635		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377093		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000263934		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377086		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377083		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377081		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000465635		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377093		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000263934		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377086		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377083		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377081		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000465635		TCGA	LD	LUAD	TCGA-05-4395-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-3CDS	ENST00000474855	ENST00000372853		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000474855	ENST00000452446		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000474855	ENST00000372850		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000474855	ENST00000372847		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
intron-3UTR	ENST00000474855	ENST00000483206		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000272519	ENST00000372853		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000272519	ENST00000452446		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000272519	ENST00000372850		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000272519	ENST00000372847		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3UTR	ENST00000272519	ENST00000483206		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000420510	ENST00000372853		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000420510	ENST00000452446		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000420510	ENST00000372850		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000420510	ENST00000372847		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3UTR	ENST00000420510	ENST00000483206		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000404963	ENST00000372853		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000404963	ENST00000452446		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000404963	ENST00000372850		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3CDS	ENST00000404963	ENST00000372847		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5UTR-3UTR	ENST00000404963	ENST00000483206		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
3UTR-3CDS	ENST00000470417	ENST00000372853		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
3UTR-3CDS	ENST00000470417	ENST00000452446		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
3UTR-3CDS	ENST00000470417	ENST00000372850		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
3UTR-3CDS	ENST00000470417	ENST00000372847		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
3UTR-3UTR	ENST00000470417	ENST00000483206		TCGA	LD	LUAD	TCGA-05-4395-01A	RALB	chr2	121010556	+	URM1	chr9	131150095	+
5CDS-5UTR	ENST00000265631	ENST00000361283		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
5CDS-intron	ENST00000265631	ENST00000478022		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
5CDS-5UTR	ENST00000416240	ENST00000361283		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
5CDS-intron	ENST00000416240	ENST00000478022		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
5CDS-5UTR	ENST00000542654	ENST00000361283		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
5CDS-intron	ENST00000542654	ENST00000478022		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
intron-5UTR	ENST00000494085	ENST00000361283		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
intron-intron	ENST00000494085	ENST00000478022		TCGA	LD	LUAD	TCGA-05-4395-01A	SLC25A13	chr7	95761055	-	CHAMP1	chr13	115086585	+
5CDS-intron	ENST00000283033	ENST00000335670		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000283033	ENST00000309157		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000283033	ENST00000261523		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000283033	ENST00000449337		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000283033	ENST00000560004		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000356957	ENST00000335670		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000356957	ENST00000309157		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000356957	ENST00000261523		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000356957	ENST00000449337		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
5CDS-intron	ENST00000356957	ENST00000560004		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
intron-intron	ENST00000570917	ENST00000335670		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
intron-intron	ENST00000570917	ENST00000309157		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
intron-intron	ENST00000570917	ENST00000261523		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
intron-intron	ENST00000570917	ENST00000449337		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
intron-intron	ENST00000570917	ENST00000560004		TCGA	LD	LUAD	TCGA-05-4395-01A	TXNDC11	chr16	11815433	-	RORA	chr15	61468655	-
In-frame	ENST00000274376	ENST00000509018		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
In-frame	ENST00000274376	ENST00000307984		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
In-frame	ENST00000274376	ENST00000507093		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
In-frame	ENST00000274376	ENST00000296859		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
In-frame	ENST00000274376	ENST00000512052		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
In-frame	ENST00000274376	ENST00000308008		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5CDS-intron	ENST00000274376	ENST00000510071		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5CDS-intron	ENST00000274376	ENST00000503398		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000456692	ENST00000509018		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000456692	ENST00000307984		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000456692	ENST00000507093		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000456692	ENST00000296859		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000456692	ENST00000512052		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000456692	ENST00000308008		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-intron	ENST00000456692	ENST00000510071		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-intron	ENST00000456692	ENST00000503398		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000512763	ENST00000509018		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000512763	ENST00000307984		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000512763	ENST00000507093		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000512763	ENST00000296859		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000512763	ENST00000512052		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000512763	ENST00000308008		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-intron	ENST00000512763	ENST00000510071		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-intron	ENST00000512763	ENST00000503398		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000506290	ENST00000509018		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000506290	ENST00000307984		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000506290	ENST00000507093		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000506290	ENST00000296859		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000506290	ENST00000512052		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-3CDS	ENST00000506290	ENST00000308008		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-intron	ENST00000506290	ENST00000510071		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
5UTR-intron	ENST00000506290	ENST00000503398		TCGA	LD	LUAD	TCGA-05-4397-01A	RASA1	chr5	86564807	+	RAPGEF6	chr5	130782396	-
intron-3CDS	ENST00000546079	ENST00000601521		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000546079	ENST00000598098		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000546079	ENST00000598495		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000546079	ENST00000196551		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000546079	ENST00000596046		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000541297	ENST00000601521		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000541297	ENST00000598098		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000541297	ENST00000598495		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000541297	ENST00000196551		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000541297	ENST00000596046		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
In-frame	ENST00000337392	ENST00000601521		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
In-frame	ENST00000337392	ENST00000598098		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
In-frame	ENST00000337392	ENST00000598495		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
In-frame	ENST00000337392	ENST00000196551		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
In-frame	ENST00000337392	ENST00000596046		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000589158	ENST00000601521		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000589158	ENST00000598098		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000589158	ENST00000598495		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000589158	ENST00000196551		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
intron-3CDS	ENST00000589158	ENST00000596046		TCGA	LD	LUAD	TCGA-05-4398-01A	CLPTM1	chr19	45458724	+	RPS5	chr19	58904726	+
5CDS-5UTR	ENST00000334528	ENST00000400098		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000334528	ENST00000400100		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000334528	ENST00000400097		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-3UTR	ENST00000334528	ENST00000553597		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000334528	ENST00000390687		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000334528	ENST00000346403		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000334528	ENST00000554227		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000334528	ENST00000577565		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000334528	ENST00000444203		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000561249	ENST00000400098		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000561249	ENST00000400100		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000561249	ENST00000400097		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-3UTR	ENST00000561249	ENST00000553597		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000561249	ENST00000390687		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000561249	ENST00000346403		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000561249	ENST00000554227		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000561249	ENST00000577565		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000561249	ENST00000444203		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000559047	ENST00000400098		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000559047	ENST00000400100		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000559047	ENST00000400097		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-3UTR	ENST00000559047	ENST00000553597		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000559047	ENST00000390687		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000559047	ENST00000346403		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000559047	ENST00000554227		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000559047	ENST00000577565		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-intron	ENST00000559047	ENST00000444203		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000558197	ENST00000400098		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000558197	ENST00000400100		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000558197	ENST00000400097		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-3UTR	ENST00000558197	ENST00000553597		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000558197	ENST00000390687		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000558197	ENST00000346403		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000558197	ENST00000554227		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000558197	ENST00000577565		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000558197	ENST00000444203		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000559150	ENST00000400098		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000559150	ENST00000400100		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000559150	ENST00000400097		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-3UTR	ENST00000559150	ENST00000553597		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000559150	ENST00000390687		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000559150	ENST00000346403		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000559150	ENST00000554227		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000559150	ENST00000577565		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000559150	ENST00000444203		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000320930	ENST00000400098		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000320930	ENST00000400100		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-5UTR	ENST00000320930	ENST00000400097		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-3UTR	ENST00000320930	ENST00000553597		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000320930	ENST00000390687		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000320930	ENST00000346403		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000320930	ENST00000554227		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000320930	ENST00000577565		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
intron-intron	ENST00000320930	ENST00000444203		TCGA	LD	LUAD	TCGA-05-4398-01A	FMN1	chr15	33300215	-	SNRPN	chr15	25131663	+
5CDS-5UTR	ENST00000358470	ENST00000272928		TCGA	LD	LUAD	TCGA-05-4398-01A	STAT4	chr2	192011339	-	ACKR3	chr2	237489083	+
5CDS-5UTR	ENST00000392320	ENST00000272928		TCGA	LD	LUAD	TCGA-05-4398-01A	STAT4	chr2	192011339	-	ACKR3	chr2	237489083	+
intron-5UTR	ENST00000470708	ENST00000272928		TCGA	LD	LUAD	TCGA-05-4398-01A	STAT4	chr2	192011339	-	ACKR3	chr2	237489083	+
5CDS-5UTR	ENST00000409995	ENST00000272928		TCGA	LD	LUAD	TCGA-05-4398-01A	STAT4	chr2	192011339	-	ACKR3	chr2	237489083	+
Frame-shit	ENST00000283415	ENST00000310581		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
In-frame	ENST00000283415	ENST00000296820		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
Frame-shit	ENST00000283415	ENST00000334602		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
Frame-shit	ENST00000283415	ENST00000508104		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000283415	ENST00000522877		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000503252	ENST00000310581		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000503252	ENST00000296820		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000503252	ENST00000334602		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000503252	ENST00000508104		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
intron-intron	ENST00000503252	ENST00000522877		TCGA	LD	LUAD	TCGA-05-4402-01A	LPCAT1	chr5	1523825	-	TERT	chr5	1282739	-
Frame-shit	ENST00000291442	ENST00000215061		TCGA	LD	LUAD	TCGA-05-4402-01A	NR2F6	chr19	17351480	-	OCEL1	chr19	17339065	+
5CDS-intron	ENST00000291442	ENST00000601576		TCGA	LD	LUAD	TCGA-05-4402-01A	NR2F6	chr19	17351480	-	OCEL1	chr19	17339065	+
5CDS-intron	ENST00000291442	ENST00000601529		TCGA	LD	LUAD	TCGA-05-4402-01A	NR2F6	chr19	17351480	-	OCEL1	chr19	17339065	+
5CDS-intron	ENST00000291442	ENST00000597836		TCGA	LD	LUAD	TCGA-05-4402-01A	NR2F6	chr19	17351480	-	OCEL1	chr19	17339065	+
5UTR-3CDS	ENST00000522684	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000522684	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000522684	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000522684	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000535192	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000535192	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000535192	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000535192	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519465	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519465	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519465	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519465	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000517887	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000517887	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000517887	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000517887	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000521059	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000521059	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000521059	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000521059	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000395218	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000395218	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000395218	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000395218	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000538769	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000538769	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000538769	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000538769	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000340930	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000340930	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000340930	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000340930	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519419	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519419	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519419	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519419	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000430260	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000430260	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000430260	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000430260	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519881	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519881	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519881	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519881	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000520892	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-3CDS	ENST00000520892	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000520892	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
5UTR-intron	ENST00000520892	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519635	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000519635	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519635	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000519635	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000517712	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000517712	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000517712	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000517712	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000522950	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000522950	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000522950	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000522950	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000520151	ENST00000517820		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-3CDS	ENST00000520151	ENST00000520733		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000520151	ENST00000309822		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
intron-intron	ENST00000520151	ENST00000357148		TCGA	LD	LUAD	TCGA-05-4402-01A	PTK2	chr8	141935760	-	UTP23	chr8	117861127	+
Frame-shit	ENST00000310301	ENST00000297001		TCGA	LD	LUAD	TCGA-05-4402-01A	VPS41	chr7	38908746	-	C7orf72	chr7	50143910	+
Frame-shit	ENST00000395969	ENST00000297001		TCGA	LD	LUAD	TCGA-05-4402-01A	VPS41	chr7	38908746	-	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000466017	ENST00000297001		TCGA	LD	LUAD	TCGA-05-4402-01A	VPS41	chr7	38908746	-	C7orf72	chr7	50143910	+
intron-3UTR	ENST00000370440	ENST00000370931		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000370440	ENST00000370932		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000370440	ENST00000351052		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000370440	ENST00000460330		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000354608		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000356595		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000414819		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000306666		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000370440	ENST00000370924		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000370931		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000370932		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000351052		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000347275	ENST00000460330		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000354608		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000356595		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000414819		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000306666		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000347275	ENST00000370924		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000337393	ENST00000370931		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000337393	ENST00000370932		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000337393	ENST00000351052		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000337393	ENST00000460330		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000337393	ENST00000354608		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000337393	ENST00000356595		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000337393	ENST00000414819		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000337393	ENST00000306666		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000337393	ENST00000370924		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000361321	ENST00000370931		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000361321	ENST00000370932		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000361321	ENST00000351052		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000361321	ENST00000460330		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000361321	ENST00000354608		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000361321	ENST00000356595		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000361321	ENST00000414819		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000361321	ENST00000306666		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000361321	ENST00000370924		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000467231	ENST00000370931		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000467231	ENST00000370932		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000467231	ENST00000351052		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000467231	ENST00000460330		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000467231	ENST00000354608		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000467231	ENST00000356595		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000467231	ENST00000414819		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000467231	ENST00000306666		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000467231	ENST00000370924		TCGA	LD	LUAD	TCGA-05-4402-01A	ZNF644	chr1	91487246	-	PTGER3	chr1	71318542	-
5CDS-3UTR	ENST00000455385	ENST00000468877		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000455385	ENST00000432161		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000455385	ENST00000411726		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000455385	ENST00000242375		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000468877		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000432161		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000411726		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000011473	ENST00000242375		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000468877		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000432161		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000411726		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
5CDS-3UTR	ENST00000470347	ENST00000242375		TCGA	LD	LUAD	TCGA-05-4403-01A	SYPL1	chr7	105738136	-	AKR1D1	chr7	137782612	+
Frame-shit	ENST00000304636	ENST00000262291		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000304636	ENST00000537567		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000304636	ENST00000539763		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000304636	ENST00000536180		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000304636	ENST00000545362		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000304636	ENST00000588617		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000317840	ENST00000262291		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000317840	ENST00000537567		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000317840	ENST00000539763		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000317840	ENST00000536180		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
Frame-shit	ENST00000317840	ENST00000545362		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000317840	ENST00000588617		TCGA	LD	LUAD	TCGA-05-4405-01A	COL3A1	chr2	189872868	+	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000497914	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-intron	ENST00000497914	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-3CDS	ENST00000223341	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-intron	ENST00000223341	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-3CDS	ENST00000336086	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-intron	ENST00000336086	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
Frame-shit	ENST00000402306	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5CDS-intron	ENST00000402306	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-3CDS	ENST00000443736	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-intron	ENST00000443736	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
Frame-shit	ENST00000453200	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5CDS-intron	ENST00000453200	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-3CDS	ENST00000447717	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5UTR-intron	ENST00000447717	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
Frame-shit	ENST00000446958	ENST00000435803		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
5CDS-intron	ENST00000446958	ENST00000544596		TCGA	LD	LUAD	TCGA-05-4415-01A	URGCP	chr7	43927014	-	ABCA13	chr7	48232556	+
In-frame	ENST00000300952	ENST00000263094		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
In-frame	ENST00000300952	ENST00000433129		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
In-frame	ENST00000300952	ENST00000435683		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000300952	ENST00000533574		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
In-frame	ENST00000591446	ENST00000263094		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
In-frame	ENST00000591446	ENST00000433129		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
In-frame	ENST00000591446	ENST00000435683		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
5CDS-intron	ENST00000591446	ENST00000533574		TCGA	LD	LUAD	TCGA-05-4418-01A	MIDN	chr19	1251900	+	ABCA7	chr19	1061781	+
intron-3CDS	ENST00000535829	ENST00000299698		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000535829	ENST00000539547		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-intron	ENST00000535829	ENST00000540049		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000357529	ENST00000299698		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000357529	ENST00000539547		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-intron	ENST00000357529	ENST00000540049		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000299673	ENST00000299698		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000299673	ENST00000539547		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-intron	ENST00000299673	ENST00000540049		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000538135	ENST00000299698		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000538135	ENST00000539547		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
intron-intron	ENST00000538135	ENST00000540049		TCGA	LD	LUAD	TCGA-05-4418-01A	RIMKLB	chr12	8834414	+	A2ML1	chr12	9027021	+
In-frame	ENST00000354216	ENST00000245663		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000354216	ENST00000395104		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000354216	ENST00000302995		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
5CDS-intron	ENST00000354216	ENST00000480766		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
In-frame	ENST00000369892	ENST00000245663		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000369892	ENST00000395104		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000369892	ENST00000302995		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
5CDS-intron	ENST00000369892	ENST00000480766		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
In-frame	ENST00000358711	ENST00000245663		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000358711	ENST00000395104		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000358711	ENST00000302995		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
5CDS-intron	ENST00000358711	ENST00000480766		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
In-frame	ENST00000369908	ENST00000245663		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000369908	ENST00000395104		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
Frame-shit	ENST00000369908	ENST00000302995		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
5CDS-intron	ENST00000369908	ENST00000480766		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000492660	ENST00000245663		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000492660	ENST00000395104		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000492660	ENST00000302995		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
intron-intron	ENST00000492660	ENST00000480766		TCGA	LD	LUAD	TCGA-05-4418-01A	UCKL1	chr20	62575750	-	ZBTB46	chr20	62378654	-
intron-3CDS	ENST00000274813	ENST00000371460		TCGA	LD	LUAD	TCGA-05-4420-01A	MUT	chr6	49430881	-	SUPT3H	chr6	44988369	-
intron-3CDS	ENST00000274813	ENST00000371459		TCGA	LD	LUAD	TCGA-05-4420-01A	MUT	chr6	49430881	-	SUPT3H	chr6	44988369	-
intron-3CDS	ENST00000274813	ENST00000371461		TCGA	LD	LUAD	TCGA-05-4420-01A	MUT	chr6	49430881	-	SUPT3H	chr6	44988369	-
intron-3CDS	ENST00000274813	ENST00000306867		TCGA	LD	LUAD	TCGA-05-4420-01A	MUT	chr6	49430881	-	SUPT3H	chr6	44988369	-
intron-intron	ENST00000274813	ENST00000371458		TCGA	LD	LUAD	TCGA-05-4420-01A	MUT	chr6	49430881	-	SUPT3H	chr6	44988369	-
intron-intron	ENST00000274813	ENST00000459689		TCGA	LD	LUAD	TCGA-05-4420-01A	MUT	chr6	49430881	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000296498	ENST00000305798		TCGA	LD	LUAD	TCGA-05-4420-01A	PRSS12	chr4	119273374	-	TSPAN5	chr4	99496056	-
5CDS-intron	ENST00000296498	ENST00000505184		TCGA	LD	LUAD	TCGA-05-4420-01A	PRSS12	chr4	119273374	-	TSPAN5	chr4	99496056	-
5CDS-intron	ENST00000296498	ENST00000509168		TCGA	LD	LUAD	TCGA-05-4420-01A	PRSS12	chr4	119273374	-	TSPAN5	chr4	99496056	-
intron-intron	ENST00000510903	ENST00000305798		TCGA	LD	LUAD	TCGA-05-4420-01A	PRSS12	chr4	119273374	-	TSPAN5	chr4	99496056	-
intron-intron	ENST00000510903	ENST00000505184		TCGA	LD	LUAD	TCGA-05-4420-01A	PRSS12	chr4	119273374	-	TSPAN5	chr4	99496056	-
intron-intron	ENST00000510903	ENST00000509168		TCGA	LD	LUAD	TCGA-05-4420-01A	PRSS12	chr4	119273374	-	TSPAN5	chr4	99496056	-
Frame-shit	ENST00000215730	ENST00000215832		TCGA	LD	LUAD	TCGA-05-4420-01A	SNAP29	chr22	21224821	+	MAPK1	chr22	22162135	-
In-frame	ENST00000215730	ENST00000398822		TCGA	LD	LUAD	TCGA-05-4420-01A	SNAP29	chr22	21224821	+	MAPK1	chr22	22162135	-
In-frame	ENST00000215730	ENST00000544786		TCGA	LD	LUAD	TCGA-05-4420-01A	SNAP29	chr22	21224821	+	MAPK1	chr22	22162135	-
5CDS-intron	ENST00000215730	ENST00000491588		TCGA	LD	LUAD	TCGA-05-4420-01A	SNAP29	chr22	21224821	+	MAPK1	chr22	22162135	-
5CDS-5UTR	ENST00000357668	ENST00000487861		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000357668	ENST00000471583		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000357668	ENST00000487270		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000357668	ENST00000488612		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000357668	ENST00000390683		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-intron	ENST00000357668	ENST00000469165		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000518721	ENST00000487861		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000518721	ENST00000471583		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000518721	ENST00000487270		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000518721	ENST00000488612		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-5UTR	ENST00000518721	ENST00000390683		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
5CDS-intron	ENST00000518721	ENST00000469165		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-5UTR	ENST00000520625	ENST00000487861		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-5UTR	ENST00000520625	ENST00000471583		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-5UTR	ENST00000520625	ENST00000487270		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-5UTR	ENST00000520625	ENST00000488612		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-5UTR	ENST00000520625	ENST00000390683		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-intron	ENST00000520625	ENST00000469165		TCGA	LD	LUAD	TCGA-05-4422-01A	ASAP1	chr8	131199482	-	RAD51B	chr14	68290259	+
intron-3CDS	ENST00000298097	ENST00000320005		TCGA	LD	LUAD	TCGA-05-4422-01A	FBXO33	chr14	39901505	-	CNGB3	chr8	87738885	-
intron-5UTR	ENST00000298097	ENST00000519777		TCGA	LD	LUAD	TCGA-05-4422-01A	FBXO33	chr14	39901505	-	CNGB3	chr8	87738885	-
intron-3CDS	ENST00000554190	ENST00000320005		TCGA	LD	LUAD	TCGA-05-4422-01A	FBXO33	chr14	39901505	-	CNGB3	chr8	87738885	-
intron-5UTR	ENST00000554190	ENST00000519777		TCGA	LD	LUAD	TCGA-05-4422-01A	FBXO33	chr14	39901505	-	CNGB3	chr8	87738885	-
In-frame	ENST00000355849	ENST00000254624		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
In-frame	ENST00000355849	ENST00000334503		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
In-frame	ENST00000355849	ENST00000519656		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
5CDS-intron	ENST00000355849	ENST00000521940		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-3CDS	ENST00000520981	ENST00000254624		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-3CDS	ENST00000520981	ENST00000334503		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-3CDS	ENST00000520981	ENST00000519656		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-intron	ENST00000520981	ENST00000521940		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-3CDS	ENST00000522578	ENST00000254624		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-3CDS	ENST00000522578	ENST00000334503		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-3CDS	ENST00000522578	ENST00000519656		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
intron-intron	ENST00000522578	ENST00000521940		TCGA	LD	LUAD	TCGA-05-4422-01A	KHDRBS3	chr8	136470197	+	EFR3A	chr8	133008653	+
In-frame	ENST00000276681	ENST00000520381		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
In-frame	ENST00000276681	ENST00000262215		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
5CDS-intron	ENST00000276681	ENST00000517955		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
5CDS-intron	ENST00000276681	ENST00000518230		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
3UTR-3CDS	ENST00000521748	ENST00000520381		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
3UTR-3CDS	ENST00000521748	ENST00000262215		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
3UTR-intron	ENST00000521748	ENST00000517955		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
3UTR-intron	ENST00000521748	ENST00000518230		TCGA	LD	LUAD	TCGA-05-4422-01A	MAL2	chr8	120220844	+	ARFGEF1	chr8	68130373	-
Frame-shit	ENST00000323851	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
Frame-shit	ENST00000323851	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
5CDS-5UTR	ENST00000323851	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
Frame-shit	ENST00000354944	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
Frame-shit	ENST00000354944	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
5CDS-5UTR	ENST00000354944	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000521414	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000521414	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-5UTR	ENST00000521414	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
5UTR-3CDS	ENST00000537882	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
5UTR-3CDS	ENST00000537882	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
5UTR-5UTR	ENST00000537882	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
In-frame	ENST00000414097	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
In-frame	ENST00000414097	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
5CDS-5UTR	ENST00000414097	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000518176	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000518176	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-5UTR	ENST00000518176	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000522476	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000522476	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-5UTR	ENST00000522476	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000518066	ENST00000395601		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-3CDS	ENST00000518066	ENST00000517992		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
intron-5UTR	ENST00000518066	ENST00000519177		TCGA	LD	LUAD	TCGA-05-4422-01A	NDRG1	chr8	134292475	-	SNTB1	chr8	121706148	-
Frame-shit	ENST00000245932	ENST00000485876		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
Frame-shit	ENST00000245932	ENST00000391762		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
In-frame	ENST00000245932	ENST00000471292		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
In-frame	ENST00000245932	ENST00000391763		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
Frame-shit	ENST00000245932	ENST00000391764		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
5CDS-5UTR	ENST00000245932	ENST00000303553		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
5CDS-intron	ENST00000245932	ENST00000480713		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-3CDS	ENST00000586619	ENST00000485876		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-3CDS	ENST00000586619	ENST00000391762		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-3CDS	ENST00000586619	ENST00000471292		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-3CDS	ENST00000586619	ENST00000391763		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-3CDS	ENST00000586619	ENST00000391764		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-5UTR	ENST00000586619	ENST00000303553		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
3UTR-intron	ENST00000586619	ENST00000480713		TCGA	LD	LUAD	TCGA-05-4422-01A	VASP	chr19	46011034	+	NDUFA3	chr19	54609241	+
In-frame	ENST00000291439	ENST00000248041		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000291439	ENST00000326742		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000291439	ENST00000402119		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
5CDS-intron	ENST00000291439	ENST00000591841		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000541844	ENST00000248041		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000541844	ENST00000326742		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000541844	ENST00000402119		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
5CDS-intron	ENST00000541844	ENST00000591841		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000590756	ENST00000248041		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000590756	ENST00000326742		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000590756	ENST00000402119		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
5CDS-intron	ENST00000590756	ENST00000591841		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000429941	ENST00000248041		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000429941	ENST00000326742		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000429941	ENST00000402119		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
5CDS-intron	ENST00000429941	ENST00000591841		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000444449	ENST00000248041		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000444449	ENST00000326742		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
In-frame	ENST00000444449	ENST00000402119		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
5CDS-intron	ENST00000444449	ENST00000591841		TCGA	LD	LUAD	TCGA-05-4426-01A	AP1M1	chr19	16319988	+	CYP4F11	chr19	16040411	-
intron-3CDS	ENST00000441493	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000441493	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000441493	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000400561	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000400561	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000400561	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000444520	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000444520	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000444520	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000414725	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000414725	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000414725	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000383094	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000383094	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000383094	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000207726	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000207726	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000207726	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000429452	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000429452	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000429452	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000585038	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000585038	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000585038	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000580469	ENST00000327451		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-3CDS	ENST00000580469	ENST00000399813		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
intron-intron	ENST00000580469	ENST00000497401		TCGA	LD	LUAD	TCGA-05-4426-01A	MICAL3	chr22	18484159	-	SLC25A18	chr22	18069902	+
Frame-shit	ENST00000504570	ENST00000368508		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
Frame-shit	ENST00000504570	ENST00000368507		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
In-frame	ENST00000382051	ENST00000368508		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
In-frame	ENST00000382051	ENST00000368507		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
Frame-shit	ENST00000503434	ENST00000368508		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
Frame-shit	ENST00000503434	ENST00000368507		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
intron-3CDS	ENST00000510033	ENST00000368508		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
intron-3CDS	ENST00000510033	ENST00000368507		TCGA	LD	LUAD	TCGA-05-4426-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117645578	-
5CDS-3UTR	ENST00000314888	ENST00000519937		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000314888	ENST00000342375		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000314888	ENST00000393822		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000314888	ENST00000409383		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000540444	ENST00000519937		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000540444	ENST00000342375		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000540444	ENST00000393822		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000540444	ENST00000409383		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
intron-3UTR	ENST00000464379	ENST00000519937		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
intron-3UTR	ENST00000464379	ENST00000342375		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
intron-3UTR	ENST00000464379	ENST00000393822		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
intron-intron	ENST00000464379	ENST00000409383		TCGA	LD	LUAD	TCGA-05-4426-01A	TLN1	chr9	35716387	-	SFTPB	chr2	85886805	-
intron-5UTR	ENST00000344318	ENST00000406486		TCGA	LD	LUAD	TCGA-05-4426-01A	ZMAT5	chr22	30162938	-	KIAA1671	chr22	25410397	+
intron-intron	ENST00000344318	ENST00000358431		TCGA	LD	LUAD	TCGA-05-4426-01A	ZMAT5	chr22	30162938	-	KIAA1671	chr22	25410397	+
intron-intron	ENST00000344318	ENST00000401395		TCGA	LD	LUAD	TCGA-05-4426-01A	ZMAT5	chr22	30162938	-	KIAA1671	chr22	25410397	+
intron-5UTR	ENST00000397781	ENST00000406486		TCGA	LD	LUAD	TCGA-05-4426-01A	ZMAT5	chr22	30162938	-	KIAA1671	chr22	25410397	+
intron-intron	ENST00000397781	ENST00000358431		TCGA	LD	LUAD	TCGA-05-4426-01A	ZMAT5	chr22	30162938	-	KIAA1671	chr22	25410397	+
intron-intron	ENST00000397781	ENST00000401395		TCGA	LD	LUAD	TCGA-05-4426-01A	ZMAT5	chr22	30162938	-	KIAA1671	chr22	25410397	+
Frame-shit	ENST00000368346	ENST00000295688		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368346	ENST00000368259		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368346	ENST00000368261		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368346	ENST00000472765		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
5CDS-intron	ENST00000368346	ENST00000368256		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000392403	ENST00000295688		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000392403	ENST00000368259		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000392403	ENST00000368261		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000392403	ENST00000472765		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
5CDS-intron	ENST00000392403	ENST00000368256		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
intron-3CDS	ENST00000548830	ENST00000295688		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
intron-3CDS	ENST00000548830	ENST00000368259		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
intron-3CDS	ENST00000548830	ENST00000368261		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
intron-3CDS	ENST00000548830	ENST00000472765		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
intron-intron	ENST00000548830	ENST00000368256		TCGA	LD	LUAD	TCGA-05-4427-01A	ASH1L	chr1	155447677	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000534941	ENST00000494598		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000534941	ENST00000460012		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000534941	ENST00000447496		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000534941	ENST00000340059		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000534941	ENST00000414191		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000534941	ENST00000334686		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
Frame-shit	ENST00000340171	ENST00000494598		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000340171	ENST00000460012		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000340171	ENST00000447496		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000340171	ENST00000340059		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000340171	ENST00000414191		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
5CDS-5UTR	ENST00000340171	ENST00000334686		TCGA	LD	LUAD	TCGA-05-4427-01A	C3orf33	chr3	155520321	-	PLCH1	chr3	155314167	-
intron-3CDS	ENST00000405402	ENST00000263388		TCGA	LD	LUAD	TCGA-05-4427-01A	GSE1	chr16	85647004	+	NOTCH3	chr19	15276902	-
In-frame	ENST00000253458	ENST00000263388		TCGA	LD	LUAD	TCGA-05-4427-01A	GSE1	chr16	85647004	+	NOTCH3	chr19	15276902	-
In-frame	ENST00000393243	ENST00000263388		TCGA	LD	LUAD	TCGA-05-4427-01A	GSE1	chr16	85647004	+	NOTCH3	chr19	15276902	-
intron-3CDS	ENST00000471070	ENST00000263388		TCGA	LD	LUAD	TCGA-05-4427-01A	GSE1	chr16	85647004	+	NOTCH3	chr19	15276902	-
5CDS-5UTR	ENST00000283249	ENST00000480212		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000283249	ENST00000259053		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000283249	ENST00000429078		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
intron-5UTR	ENST00000485635	ENST00000480212		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
intron-5UTR	ENST00000485635	ENST00000259053		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
intron-5UTR	ENST00000485635	ENST00000429078		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000428609	ENST00000480212		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000428609	ENST00000259053		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000428609	ENST00000429078		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
intron-5UTR	ENST00000409967	ENST00000480212		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
intron-5UTR	ENST00000409967	ENST00000259053		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
intron-5UTR	ENST00000409967	ENST00000429078		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000409872	ENST00000480212		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000409872	ENST00000259053		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
5CDS-5UTR	ENST00000409872	ENST00000429078		TCGA	LD	LUAD	TCGA-05-4427-01A	ITGB6	chr2	160980302	-	CD302	chr2	160639980	-
Frame-shit	ENST00000297814	ENST00000376395		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
Frame-shit	ENST00000297814	ENST00000257468		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
intron-3CDS	ENST00000413982	ENST00000376395		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
intron-3CDS	ENST00000413982	ENST00000257468		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
Frame-shit	ENST00000334204	ENST00000376395		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
Frame-shit	ENST00000334204	ENST00000257468		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
intron-3CDS	ENST00000376347	ENST00000376395		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
intron-3CDS	ENST00000376347	ENST00000257468		TCGA	LD	LUAD	TCGA-05-4427-01A	KIF27	chr9	86495212	-	UBQLN1	chr9	86301070	-
In-frame	ENST00000589123	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000589123	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000589123	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000589123	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000346156	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000346156	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000346156	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000346156	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000395111	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000395111	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000395111	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000395111	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000586919	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000586919	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000586919	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000586919	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000341919	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000341919	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000341919	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000341919	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000590282	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000590282	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000590282	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000590282	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000443272	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000443272	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
In-frame	ENST00000443272	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
Frame-shit	ENST00000443272	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
intron-3CDS	ENST00000588839	ENST00000598494		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
intron-3CDS	ENST00000588839	ENST00000600229		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
intron-3CDS	ENST00000588839	ENST00000356762		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
intron-3CDS	ENST00000588839	ENST00000308243		TCGA	LD	LUAD	TCGA-05-4427-01A	NFIC	chr19	3452664	+	CRB3	chr19	6466477	+
5UTR-3CDS	ENST00000394752	ENST00000418458		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-5UTR	ENST00000394752	ENST00000394799		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-intron	ENST00000394752	ENST00000460073		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
intron-3CDS	ENST00000394750	ENST00000418458		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
intron-5UTR	ENST00000394750	ENST00000394799		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
intron-intron	ENST00000394750	ENST00000460073		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-3CDS	ENST00000358080	ENST00000418458		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-5UTR	ENST00000358080	ENST00000394799		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-intron	ENST00000358080	ENST00000460073		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-3CDS	ENST00000296295	ENST00000418458		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-5UTR	ENST00000296295	ENST00000394799		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5UTR-intron	ENST00000296295	ENST00000460073		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
intron-3CDS	ENST00000470575	ENST00000418458		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
intron-5UTR	ENST00000470575	ENST00000394799		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
intron-intron	ENST00000470575	ENST00000460073		TCGA	LD	LUAD	TCGA-05-4427-01A	SFMBT1	chr3	53079832	-	GNL3	chr3	52720785	+
5CDS-intron	ENST00000531863	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000531863	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000531863	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000531863	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000532677	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000532677	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000532677	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000532677	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000453114	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000453114	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000453114	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000453114	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000360510	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000360510	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000360510	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000360510	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000541961	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000541961	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000541961	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000541961	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000530165	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000530165	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000530165	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5CDS-intron	ENST00000530165	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
intron-intron	ENST00000533799	ENST00000527350		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
intron-intron	ENST00000533799	ENST00000278919		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
intron-intron	ENST00000533799	ENST00000366139		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
intron-intron	ENST00000533799	ENST00000524435		TCGA	LD	LUAD	TCGA-05-4432-01A	DPP3	chr11	66254148	+	FEZ1	chr11	125333466	-
5UTR-3CDS	ENST00000390006	ENST00000294794		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5UTR-3CDS	ENST00000390006	ENST00000367940		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5UTR-intron	ENST00000390006	ENST00000367938		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
In-frame	ENST00000309794	ENST00000294794		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
In-frame	ENST00000309794	ENST00000367940		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5CDS-intron	ENST00000309794	ENST00000367938		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
In-frame	ENST00000345415	ENST00000294794		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
In-frame	ENST00000345415	ENST00000367940		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5CDS-intron	ENST00000345415	ENST00000367938		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
In-frame	ENST00000457415	ENST00000294794		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
In-frame	ENST00000457415	ENST00000367940		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5CDS-intron	ENST00000457415	ENST00000367938		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5UTR-3CDS	ENST00000412079	ENST00000294794		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5UTR-3CDS	ENST00000412079	ENST00000367940		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5UTR-intron	ENST00000412079	ENST00000367938		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
3UTR-3CDS	ENST00000581743	ENST00000294794		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
3UTR-3CDS	ENST00000581743	ENST00000367940		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
3UTR-intron	ENST00000581743	ENST00000367938		TCGA	LD	LUAD	TCGA-05-4432-01A	NARF	chr17	80417948	+	OLFML2B	chr1	161989972	-
5UTR-3CDS	ENST00000267890	ENST00000305560		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-intron	ENST00000267890	ENST00000559860		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-intron	ENST00000267890	ENST00000533841		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-3CDS	ENST00000567840	ENST00000305560		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-intron	ENST00000567840	ENST00000559860		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-intron	ENST00000567840	ENST00000533841		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-3CDS	ENST00000567274	ENST00000305560		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-intron	ENST00000567274	ENST00000559860		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5UTR-intron	ENST00000567274	ENST00000533841		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
intron-3CDS	ENST00000567485	ENST00000305560		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
intron-intron	ENST00000567485	ENST00000559860		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
intron-intron	ENST00000567485	ENST00000533841		TCGA	LD	LUAD	TCGA-05-4432-01A	TTBK2	chr15	43212636	-	SPATA5L1	chr15	45709467	+
5CDS-5UTR	ENST00000442123	ENST00000426342		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000442123	ENST00000399232		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-intron	ENST00000442123	ENST00000399222		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000442123	ENST00000357362		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000442123	ENST00000439988		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000442123	ENST00000472499		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000354586	ENST00000426342		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000354586	ENST00000399232		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-intron	ENST00000354586	ENST00000399222		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000354586	ENST00000357362		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000354586	ENST00000439988		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-5UTR	ENST00000354586	ENST00000472499		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
intron-5UTR	ENST00000556861	ENST00000426342		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
intron-5UTR	ENST00000556861	ENST00000399232		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
intron-intron	ENST00000556861	ENST00000399222		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
intron-5UTR	ENST00000556861	ENST00000357362		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
intron-5UTR	ENST00000556861	ENST00000439988		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
intron-5UTR	ENST00000556861	ENST00000472499		TCGA	LD	LUAD	TCGA-05-4434-01A	STYX	chr14	53197249	+	MDGA2	chr14	47770753	-
5CDS-intron	ENST00000368494	ENST00000368503		TCGA	LD	LUAD	TCGA-05-5423-01A	NUS1	chr6	117997248	+	DCBLD1	chr6	117890783	+
5CDS-intron	ENST00000368494	ENST00000296955		TCGA	LD	LUAD	TCGA-05-5423-01A	NUS1	chr6	117997248	+	DCBLD1	chr6	117890783	+
5CDS-intron	ENST00000368494	ENST00000338728		TCGA	LD	LUAD	TCGA-05-5423-01A	NUS1	chr6	117997248	+	DCBLD1	chr6	117890783	+
5CDS-intron	ENST00000368494	ENST00000534777		TCGA	LD	LUAD	TCGA-05-5423-01A	NUS1	chr6	117997248	+	DCBLD1	chr6	117890783	+
In-frame	ENST00000540306	ENST00000573500		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-3UTR	ENST00000540306	ENST00000576221		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-intron	ENST00000540306	ENST00000268896		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-intron	ENST00000540306	ENST00000576183		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-intron	ENST00000540306	ENST00000325214		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
In-frame	ENST00000262415	ENST00000573500		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-3UTR	ENST00000262415	ENST00000576221		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-intron	ENST00000262415	ENST00000268896		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-intron	ENST00000262415	ENST00000576183		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-intron	ENST00000262415	ENST00000325214		TCGA	LD	LUAD	TCGA-05-5425-01A	DHX8	chr17	41585888	+	PCTP	chr17	53900122	+
5CDS-3UTR	ENST00000253363	ENST00000375465		TCGA	LD	LUAD	TCGA-05-5425-01A	RBM39	chr20	34304662	-	BPIFA4P	chr20	31789338	+
5CDS-3UTR	ENST00000361162	ENST00000375465		TCGA	LD	LUAD	TCGA-05-5425-01A	RBM39	chr20	34304662	-	BPIFA4P	chr20	31789338	+
5CDS-3UTR	ENST00000528062	ENST00000375465		TCGA	LD	LUAD	TCGA-05-5425-01A	RBM39	chr20	34304662	-	BPIFA4P	chr20	31789338	+
5CDS-3UTR	ENST00000407261	ENST00000375465		TCGA	LD	LUAD	TCGA-05-5425-01A	RBM39	chr20	34304662	-	BPIFA4P	chr20	31789338	+
intron-3UTR	ENST00000397370	ENST00000375465		TCGA	LD	LUAD	TCGA-05-5425-01A	RBM39	chr20	34304662	-	BPIFA4P	chr20	31789338	+
intron-3UTR	ENST00000463098	ENST00000375465		TCGA	LD	LUAD	TCGA-05-5425-01A	RBM39	chr20	34304662	-	BPIFA4P	chr20	31789338	+
5CDS-3UTR	ENST00000335209	ENST00000496136		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
5CDS-3UTR	ENST00000335209	ENST00000379215		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
intron-3UTR	ENST00000541210	ENST00000496136		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
intron-3UTR	ENST00000541210	ENST00000379215		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
5CDS-3UTR	ENST00000392545	ENST00000496136		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
5CDS-3UTR	ENST00000392545	ENST00000379215		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
intron-3UTR	ENST00000535198	ENST00000496136		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
intron-3UTR	ENST00000535198	ENST00000379215		TCGA	LD	LUAD	TCGA-05-5425-01A	TESC	chr12	117494611	-	ECHDC3	chr10	11789348	+
5CDS-5UTR	ENST00000267101	ENST00000573319		TCGA	LD	LUAD	TCGA-05-5429-01A	ERBB3	chr12	56493813	+	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000450146	ENST00000573319		TCGA	LD	LUAD	TCGA-05-5429-01A	ERBB3	chr12	56493813	+	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000415288	ENST00000573319		TCGA	LD	LUAD	TCGA-05-5429-01A	ERBB3	chr12	56493813	+	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000553131	ENST00000573319		TCGA	LD	LUAD	TCGA-05-5429-01A	ERBB3	chr12	56493813	+	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000411731	ENST00000573319		TCGA	LD	LUAD	TCGA-05-5429-01A	ERBB3	chr12	56493813	+	BCAR4	chr16	11914154	-
5CDS-5UTR	ENST00000549832	ENST00000573319		TCGA	LD	LUAD	TCGA-05-5429-01A	ERBB3	chr12	56493813	+	BCAR4	chr16	11914154	-
Frame-shit	ENST00000262613	ENST00000269346		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
Frame-shit	ENST00000262613	ENST00000529107		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
5CDS-intron	ENST00000262613	ENST00000534346		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
5CDS-intron	ENST00000262613	ENST00000441391		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
intron-3CDS	ENST00000413388	ENST00000269346		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
intron-3CDS	ENST00000413388	ENST00000529107		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
intron-intron	ENST00000413388	ENST00000534346		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
intron-intron	ENST00000413388	ENST00000441391		TCGA	LD	LUAD	TCGA-05-5429-01A	SLC9A3R1	chr17	72745426	+	TTYH2	chr17	72256268	+
In-frame	ENST00000511367	ENST00000282469		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000511367	ENST00000509059		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000511367	ENST00000356031		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000511367	ENST00000440995		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000511367	ENST00000303129		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000442743	ENST00000282469		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000442743	ENST00000509059		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000442743	ENST00000356031		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000442743	ENST00000440995		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000442743	ENST00000303129		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000344624	ENST00000282469		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000344624	ENST00000509059		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000344624	ENST00000356031		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
In-frame	ENST00000344624	ENST00000440995		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000344624	ENST00000303129		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
Frame-shit	ENST00000513349	ENST00000282469		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
Frame-shit	ENST00000513349	ENST00000509059		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
Frame-shit	ENST00000513349	ENST00000356031		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
Frame-shit	ENST00000513349	ENST00000440995		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000513349	ENST00000303129		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000504361	ENST00000282469		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000504361	ENST00000509059		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000504361	ENST00000356031		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
intron-3CDS	ENST00000504361	ENST00000440995		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
intron-intron	ENST00000504361	ENST00000303129		TCGA	LD	LUAD	TCGA-05-5715-01A	DROSHA	chr5	31483661	-	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000294543	ENST00000376030		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000294543	ENST00000503743		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000294543	ENST00000422387		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000294543	ENST00000361144		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000294543	ENST00000400798		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000294543	ENST00000400797		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375127	ENST00000376030		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375127	ENST00000503743		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375127	ENST00000422387		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375127	ENST00000361144		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375127	ENST00000400798		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375127	ENST00000400797		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
intron-intron	ENST00000489814	ENST00000376030		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
intron-intron	ENST00000489814	ENST00000503743		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
intron-intron	ENST00000489814	ENST00000422387		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
intron-intron	ENST00000489814	ENST00000361144		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
intron-intron	ENST00000489814	ENST00000400798		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
intron-intron	ENST00000489814	ENST00000400797		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375122	ENST00000376030		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375122	ENST00000503743		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375122	ENST00000422387		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375122	ENST00000361144		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375122	ENST00000400798		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
5CDS-intron	ENST00000375122	ENST00000400797		TCGA	LD	LUAD	TCGA-35-3615-01A	TMCO4	chr1	20073656	-	KAZN	chr1	14506930	+
In-frame	ENST00000321599	ENST00000333486		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
5CDS-intron	ENST00000321599	ENST00000494212		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-3CDS	ENST00000395238	ENST00000333486		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-intron	ENST00000395238	ENST00000494212		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
In-frame	ENST00000468463	ENST00000333486		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
5CDS-intron	ENST00000468463	ENST00000494212		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-3CDS	ENST00000460540	ENST00000333486		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-intron	ENST00000460540	ENST00000494212		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-3CDS	ENST00000498149	ENST00000333486		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-intron	ENST00000498149	ENST00000494212		TCGA	LD	LUAD	TCGA-35-4122-01A	IP6K1	chr3	49785251	-	UBA7	chr3	49851375	-
intron-3CDS	ENST00000408388	ENST00000369485		TCGA	LD	LUAD	TCGA-35-4123-01A	PVT1	chr8	128806980	+	RNGTT	chr6	89511351	-
intron-intron	ENST00000408388	ENST00000265607		TCGA	LD	LUAD	TCGA-35-4123-01A	PVT1	chr8	128806980	+	RNGTT	chr6	89511351	-
intron-intron	ENST00000408388	ENST00000538899		TCGA	LD	LUAD	TCGA-35-4123-01A	PVT1	chr8	128806980	+	RNGTT	chr6	89511351	-
intron-intron	ENST00000408388	ENST00000369475		TCGA	LD	LUAD	TCGA-35-4123-01A	PVT1	chr8	128806980	+	RNGTT	chr6	89511351	-
Frame-shit	ENST00000265109	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
5CDS-3UTR	ENST00000265109	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
Frame-shit	ENST00000512629	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
5CDS-3UTR	ENST00000512629	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
Frame-shit	ENST00000428746	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
5CDS-3UTR	ENST00000428746	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
Frame-shit	ENST00000503673	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
5CDS-3UTR	ENST00000503673	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
5UTR-3CDS	ENST00000515799	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
5UTR-3UTR	ENST00000515799	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
intron-3CDS	ENST00000506376	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
intron-3UTR	ENST00000506376	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
intron-3CDS	ENST00000507276	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
intron-3UTR	ENST00000507276	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
intron-3CDS	ENST00000397449	ENST00000505624		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
intron-3UTR	ENST00000397449	ENST00000514080		TCGA	LD	LUAD	TCGA-35-4123-01A	RAI14	chr5	34687060	+	TTC23L	chr5	34863003	+
In-frame	ENST00000601181	ENST00000221233		TCGA	LD	LUAD	TCGA-35-5375-01A	CXCL17	chr19	42937128	-	EXOSC5	chr19	41897867	-
In-frame	ENST00000601181	ENST00000596905		TCGA	LD	LUAD	TCGA-35-5375-01A	CXCL17	chr19	42937128	-	EXOSC5	chr19	41897867	-
In-frame	ENST00000538689	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
In-frame	ENST00000220584	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
intron-3CDS	ENST00000446331	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
intron-3CDS	ENST00000443614	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
In-frame	ENST00000525900	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
In-frame	ENST00000528812	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
In-frame	ENST00000530664	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
In-frame	ENST00000528643	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
In-frame	ENST00000525777	ENST00000382208		TCGA	LD	LUAD	TCGA-35-5375-01A	FDFT1	chr8	11679387	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000395811	ENST00000338854		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395811	ENST00000395757		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395811	ENST00000355815		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395811	ENST00000261646		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395811	ENST00000435530		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000395811	ENST00000583732		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
Frame-shit	ENST00000444976	ENST00000338854		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000444976	ENST00000395757		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000444976	ENST00000355815		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000444976	ENST00000261646		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000444976	ENST00000435530		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000444976	ENST00000583732		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
Frame-shit	ENST00000395804	ENST00000338854		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395804	ENST00000395757		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395804	ENST00000355815		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395804	ENST00000261646		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395804	ENST00000435530		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000395804	ENST00000583732		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
Frame-shit	ENST00000341712	ENST00000338854		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000341712	ENST00000395757		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000341712	ENST00000355815		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000341712	ENST00000261646		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000341712	ENST00000435530		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000341712	ENST00000583732		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
Frame-shit	ENST00000395806	ENST00000338854		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395806	ENST00000395757		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395806	ENST00000355815		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395806	ENST00000261646		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-intron	ENST00000395806	ENST00000435530		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
5CDS-5UTR	ENST00000395806	ENST00000583732		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
3UTR-3CDS	ENST00000395807	ENST00000338854		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
3UTR-intron	ENST00000395807	ENST00000395757		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
3UTR-intron	ENST00000395807	ENST00000355815		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
3UTR-intron	ENST00000395807	ENST00000261646		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
3UTR-intron	ENST00000395807	ENST00000435530		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
3UTR-5UTR	ENST00000395807	ENST00000583732		TCGA	LD	LUAD	TCGA-35-5375-01A	MPRIP	chr17	16946285	+	SREBF1	chr17	17723835	-
intron-3CDS	ENST00000319004	ENST00000420329		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000319004	ENST00000560098		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000319004	ENST00000268184		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000319004	ENST00000558619		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-3CDS	ENST00000437269	ENST00000420329		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000437269	ENST00000560098		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000437269	ENST00000268184		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000437269	ENST00000558619		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-3CDS	ENST00000576778	ENST00000420329		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000576778	ENST00000560098		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000576778	ENST00000268184		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
intron-intron	ENST00000576778	ENST00000558619		TCGA	LD	LUAD	TCGA-38-4628-01A	GEMIN4	chr17	655858	-	CRTC3	chr15	91161115	+
5CDS-5UTR	ENST00000398016	ENST00000489520		TCGA	LD	LUAD	TCGA-38-4628-01A	GRIP1	chr12	66990627	-	RPSAP52	chr12	66152811	-
5CDS-5UTR	ENST00000359742	ENST00000489520		TCGA	LD	LUAD	TCGA-38-4628-01A	GRIP1	chr12	66990627	-	RPSAP52	chr12	66152811	-
5CDS-5UTR	ENST00000286445	ENST00000489520		TCGA	LD	LUAD	TCGA-38-4628-01A	GRIP1	chr12	66990627	-	RPSAP52	chr12	66152811	-
intron-5UTR	ENST00000542021	ENST00000489520		TCGA	LD	LUAD	TCGA-38-4628-01A	GRIP1	chr12	66990627	-	RPSAP52	chr12	66152811	-
intron-3CDS	ENST00000379825	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379825	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379825	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379825	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000379825	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000309615	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000309615	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000309615	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000309615	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000309615	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000397172	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000397172	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000397172	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000397172	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000397172	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379817	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379817	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379817	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379817	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000379817	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000436040	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000436040	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000436040	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000436040	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000436040	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379819	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379819	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379819	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379819	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000379819	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000468275	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000468275	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000468275	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000468275	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000468275	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000463596	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000463596	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000463596	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000463596	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000463596	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000476858	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000476858	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000476858	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000476858	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000476858	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379813	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379813	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379813	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379813	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000379813	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000473270	ENST00000361005		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000473270	ENST00000342836		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000473270	ENST00000429677		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000473270	ENST00000379405		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000473270	ENST00000495682		TCGA	LD	LUAD	TCGA-38-4629-01A	APTX	chr9	33024998	-	PRSS3	chr9	33796641	+
Frame-shit	ENST00000265732	ENST00000284601		TCGA	LD	LUAD	TCGA-38-4629-01A	RBM48	chr7	92161863	+	PPP1R3A	chr7	113558352	-
Frame-shit	ENST00000481551	ENST00000284601		TCGA	LD	LUAD	TCGA-38-4629-01A	RBM48	chr7	92161863	+	PPP1R3A	chr7	113558352	-
5UTR-3CDS	ENST00000398958	ENST00000325558		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
5UTR-3CDS	ENST00000398958	ENST00000543125		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
5UTR-intron	ENST00000398958	ENST00000538258		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
5UTR-3CDS	ENST00000373833	ENST00000325558		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
5UTR-3CDS	ENST00000373833	ENST00000543125		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
5UTR-intron	ENST00000373833	ENST00000538258		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000373832	ENST00000325558		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000373832	ENST00000543125		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-intron	ENST00000373832	ENST00000538258		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000373831	ENST00000325558		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000373831	ENST00000543125		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-intron	ENST00000373831	ENST00000538258		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000429051	ENST00000325558		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000429051	ENST00000543125		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
intron-intron	ENST00000429051	ENST00000538258		TCGA	LD	LUAD	TCGA-38-4629-01A	RCC1	chr1	28832596	+	PGA3	chr11	60977314	+
In-frame	ENST00000265362	ENST00000393486		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
In-frame	ENST00000265362	ENST00000257724		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
5CDS-intron	ENST00000265362	ENST00000448022		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
5CDS-intron	ENST00000265362	ENST00000423503		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
Frame-shit	ENST00000436949	ENST00000393486		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
Frame-shit	ENST00000436949	ENST00000257724		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
5CDS-intron	ENST00000436949	ENST00000448022		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
5CDS-intron	ENST00000436949	ENST00000423503		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
intron-3CDS	ENST00000471474	ENST00000393486		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
intron-3CDS	ENST00000471474	ENST00000257724		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
intron-intron	ENST00000471474	ENST00000448022		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
intron-intron	ENST00000471474	ENST00000423503		TCGA	LD	LUAD	TCGA-38-4629-01A	SEMA3A	chr7	83823791	-	MDFIC	chr7	114655742	+
intron-3CDS	ENST00000364938	ENST00000325558		TCGA	LD	LUAD	TCGA-38-4629-01A	SNHG3	chr1	28834672	+	PGA3	chr11	60977314	+
intron-3CDS	ENST00000364938	ENST00000543125		TCGA	LD	LUAD	TCGA-38-4629-01A	SNHG3	chr1	28834672	+	PGA3	chr11	60977314	+
intron-intron	ENST00000364938	ENST00000538258		TCGA	LD	LUAD	TCGA-38-4629-01A	SNHG3	chr1	28834672	+	PGA3	chr11	60977314	+
Frame-shit	ENST00000361822	ENST00000540367		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000361822	ENST00000376618		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000361822	ENST00000265641		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000361822	ENST00000539743		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000361822	ENST00000537756		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000361822	ENST00000538994		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450657	ENST00000540367		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450657	ENST00000376618		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450657	ENST00000265641		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000450657	ENST00000539743		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000450657	ENST00000537756		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000450657	ENST00000538994		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000421043	ENST00000540367		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000421043	ENST00000376618		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000421043	ENST00000265641		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000421043	ENST00000539743		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000421043	ENST00000537756		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
5CDS-intron	ENST00000421043	ENST00000538994		TCGA	LD	LUAD	TCGA-38-4629-01A	ZNF277	chr7	111846862	+	CPT1A	chr11	68527806	-
Frame-shit	ENST00000220592	ENST00000430863		TCGA	LD	LUAD	TCGA-38-4630-01A	AGO2	chr8	141557567	-	MROH5	chr8	142505583	-
Frame-shit	ENST00000519980	ENST00000430863		TCGA	LD	LUAD	TCGA-38-4630-01A	AGO2	chr8	141557567	-	MROH5	chr8	142505583	-
intron-3CDS	ENST00000517293	ENST00000430863		TCGA	LD	LUAD	TCGA-38-4630-01A	AGO2	chr8	141557567	-	MROH5	chr8	142505583	-
5CDS-intron	ENST00000299155	ENST00000560869		TCGA	LD	LUAD	TCGA-38-4630-01A	AMN	chr14	103396423	+	TNFAIP2	chr14	103590712	+
5CDS-intron	ENST00000299155	ENST00000333007		TCGA	LD	LUAD	TCGA-38-4630-01A	AMN	chr14	103396423	+	TNFAIP2	chr14	103590712	+
5CDS-intron	ENST00000299155	ENST00000451723		TCGA	LD	LUAD	TCGA-38-4630-01A	AMN	chr14	103396423	+	TNFAIP2	chr14	103590712	+
5CDS-intron	ENST00000299155	ENST00000538222		TCGA	LD	LUAD	TCGA-38-4630-01A	AMN	chr14	103396423	+	TNFAIP2	chr14	103590712	+
5CDS-intron	ENST00000299155	ENST00000561217		TCGA	LD	LUAD	TCGA-38-4630-01A	AMN	chr14	103396423	+	TNFAIP2	chr14	103590712	+
In-frame	ENST00000409074	ENST00000440884		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000409074	ENST00000416682		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000409074	ENST00000429436		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000409074	ENST00000303622		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000409074	ENST00000216288		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000409074	ENST00000553942		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000409074	ENST00000335102		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
5CDS-intron	ENST00000409074	ENST00000561071		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000440884		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000416682		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000429436		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000303622		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000216288		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000553942		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000556253	ENST00000335102		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
5CDS-intron	ENST00000556253	ENST00000561071		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000440884		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000416682		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000429436		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000303622		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000216288		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000553942		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
In-frame	ENST00000247618	ENST00000335102		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
5CDS-intron	ENST00000247618	ENST00000561071		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000440884		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000416682		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000429436		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000303622		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000216288		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000553942		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-3CDS	ENST00000477116	ENST00000335102		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
3UTR-intron	ENST00000477116	ENST00000561071		TCGA	LD	LUAD	TCGA-38-4630-01A	APOPT1	chr14	104040507	+	MARK3	chr14	103941330	+
intron-5UTR	ENST00000376460	ENST00000376414		TCGA	LD	LUAD	TCGA-38-4630-01A	DOCK9	chr13	99738477	-	GPR183	chr13	99948417	-
5CDS-5UTR	ENST00000339416	ENST00000376414		TCGA	LD	LUAD	TCGA-38-4630-01A	DOCK9	chr13	99738477	-	GPR183	chr13	99948417	-
intron-5UTR	ENST00000448493	ENST00000376414		TCGA	LD	LUAD	TCGA-38-4630-01A	DOCK9	chr13	99738477	-	GPR183	chr13	99948417	-
intron-5UTR	ENST00000442173	ENST00000376414		TCGA	LD	LUAD	TCGA-38-4630-01A	DOCK9	chr13	99738477	-	GPR183	chr13	99948417	-
intron-5UTR	ENST00000461998	ENST00000376414		TCGA	LD	LUAD	TCGA-38-4630-01A	DOCK9	chr13	99738477	-	GPR183	chr13	99948417	-
In-frame	ENST00000538689	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000538689	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000538689	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000538689	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000538689	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000220584	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000220584	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000220584	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000220584	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000220584	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
intron-3CDS	ENST00000446331	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
intron-3CDS	ENST00000446331	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
intron-5UTR	ENST00000446331	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
intron-intron	ENST00000446331	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
intron-intron	ENST00000446331	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000443614	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000443614	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000443614	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000443614	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000443614	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000525900	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000525900	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000525900	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000525900	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000525900	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000528812	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000528812	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000528812	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000528812	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000528812	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000530664	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000530664	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000530664	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000530664	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000530664	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000528643	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000528643	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000528643	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000528643	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000528643	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000525777	ENST00000436750		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
In-frame	ENST00000525777	ENST00000455213		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000525777	ENST00000403422		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000525777	ENST00000528323		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000525777	ENST00000284503		TCGA	LD	LUAD	TCGA-38-4630-01A	FDFT1	chr8	11667359	+	NEIL2	chr8	11637107	+
Frame-shit	ENST00000534526	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
Frame-shit	ENST00000534526	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
Frame-shit	ENST00000534526	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
Frame-shit	ENST00000534526	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
5CDS-intron	ENST00000534526	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
5CDS-intron	ENST00000534526	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
5CDS-intron	ENST00000534526	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
5CDS-intron	ENST00000534526	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
5CDS-intron	ENST00000534526	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000531134	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000531134	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000531134	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000531134	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000531134	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000531134	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000531134	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000531134	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000531134	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000427716	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000427716	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000427716	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000427716	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000427716	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000427716	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000427716	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000427716	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000427716	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000266482	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000266482	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000266482	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000266482	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000266482	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000266482	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000266482	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000266482	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000266482	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000546442	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000546442	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000546442	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000546442	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000546442	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000546442	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000546442	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000546442	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000546442	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000525053	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000525053	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000525053	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000525053	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000525053	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000525053	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000525053	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000525053	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000525053	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000381025	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000381025	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000381025	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000381025	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000381025	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000381025	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000381025	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000381025	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000381025	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000472289	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000472289	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000472289	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000472289	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000472289	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000472289	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000472289	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000472289	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000472289	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000473513	ENST00000452533		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000473513	ENST00000553257		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000473513	ENST00000549701		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-3CDS	ENST00000473513	ENST00000358214		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000473513	ENST00000548671		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000473513	ENST00000266481		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000473513	ENST00000547312		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000473513	ENST00000414834		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
intron-intron	ENST00000473513	ENST00000381000		TCGA	LD	LUAD	TCGA-38-4630-01A	FGD4	chr12	32552893	+	DNM1L	chr12	32884788	+
Frame-shit	ENST00000481110	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	LD	LUAD	TCGA-38-4630-01A	FGFR3	chr4	1801250	+	TACC3	chr4	1729435	+
Frame-shit	ENST00000309366	ENST00000294244		TCGA	LD	LUAD	TCGA-38-4630-01A	FKBP2	chr11	64010030	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000449942	ENST00000294244		TCGA	LD	LUAD	TCGA-38-4630-01A	FKBP2	chr11	64010030	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000394540	ENST00000294244		TCGA	LD	LUAD	TCGA-38-4630-01A	FKBP2	chr11	64010030	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000417257	ENST00000267812		TCGA	LD	LUAD	TCGA-38-4630-01A	FRMD5	chr15	44487151	-	MFAP1	chr15	44109646	-
Frame-shit	ENST00000402883	ENST00000267812		TCGA	LD	LUAD	TCGA-38-4630-01A	FRMD5	chr15	44487151	-	MFAP1	chr15	44109646	-
intron-3CDS	ENST00000484674	ENST00000267812		TCGA	LD	LUAD	TCGA-38-4630-01A	FRMD5	chr15	44487151	-	MFAP1	chr15	44109646	-
intron-3CDS	ENST00000340149	ENST00000299626		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
intron-3CDS	ENST00000340149	ENST00000376156		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
intron-5UTR	ENST00000340149	ENST00000532552		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
Frame-shit	ENST00000361507	ENST00000299626		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
Frame-shit	ENST00000361507	ENST00000376156		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
5CDS-5UTR	ENST00000361507	ENST00000532552		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
5UTR-3CDS	ENST00000526030	ENST00000299626		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
5UTR-3CDS	ENST00000526030	ENST00000376156		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
5UTR-5UTR	ENST00000526030	ENST00000532552		TCGA	LD	LUAD	TCGA-38-4630-01A	GAB2	chr11	78128692	-	ALG8	chr11	77820627	-
In-frame	ENST00000392562	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000392562	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000392562	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
5CDS-intron	ENST00000392562	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000316804	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000316804	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000316804	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
5CDS-intron	ENST00000316804	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000316615	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000316615	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
In-frame	ENST00000316615	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
5CDS-intron	ENST00000316615	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000392563	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000392563	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000392563	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
5CDS-intron	ENST00000392563	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000392564	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000392564	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000392564	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
5CDS-intron	ENST00000392564	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000578961	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000578961	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
Frame-shit	ENST00000578961	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
5CDS-intron	ENST00000578961	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
intron-3CDS	ENST00000462266	ENST00000421564		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
intron-3CDS	ENST00000462266	ENST00000331758		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
intron-3CDS	ENST00000462266	ENST00000370848		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
intron-intron	ENST00000462266	ENST00000491916		TCGA	LD	LUAD	TCGA-38-4630-01A	GRB2	chr17	73389632	-	SS18L1	chr20	60747738	+
intron-3CDS	ENST00000403668	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000403668	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000444075	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000444075	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000287701	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000287701	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000558662	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000558662	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000523613	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000523613	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000397358	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000397358	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000519047	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000519047	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
5UTR-3CDS	ENST00000355231	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
5UTR-3CDS	ENST00000355231	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000524238	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000524238	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000517386	ENST00000337221		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000517386	ENST00000301904		TCGA	LD	LUAD	TCGA-38-4630-01A	HMBOX1	chr8	28749001	+	SCARA3	chr8	27507219	+
intron-3CDS	ENST00000368321	ENST00000366812		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-intron	ENST00000368321	ENST00000464927		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-3CDS	ENST00000368320	ENST00000366812		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-intron	ENST00000368320	ENST00000464927		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-3CDS	ENST00000368319	ENST00000366812		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-intron	ENST00000368319	ENST00000464927		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-3CDS	ENST00000482337	ENST00000366812		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
intron-intron	ENST00000482337	ENST00000464927		TCGA	LD	LUAD	TCGA-38-4630-01A	KIAA0907	chr1	155884008	-	ACBD3	chr1	226334522	-
5CDS-intron	ENST00000550735	ENST00000531326		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000550735	ENST00000392597		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000550735	ENST00000351677		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000551404	ENST00000531326		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000551404	ENST00000392597		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000551404	ENST00000351677		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000547305	ENST00000531326		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000547305	ENST00000392597		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
5CDS-intron	ENST00000547305	ENST00000351677		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
3UTR-intron	ENST00000546394	ENST00000531326		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
3UTR-intron	ENST00000546394	ENST00000392597		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
3UTR-intron	ENST00000546394	ENST00000351677		TCGA	LD	LUAD	TCGA-38-4630-01A	MAPKAPK5	chr12	112280573	+	PTPN11	chr12	112884080	+
Frame-shit	ENST00000338882	ENST00000368919		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000338882	ENST00000330550		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000338882	ENST00000439654		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
In-frame	ENST00000338882	ENST00000456137		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000338882	ENST00000461487		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000368919		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000330550		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000439654		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000456137		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
intron-5UTR	ENST00000490043	ENST00000461487		TCGA	LD	LUAD	TCGA-38-4630-01A	METTL24	chr6	110620125	-	SLC22A16	chr6	110778220	-
5CDS-5UTR	ENST00000423230	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000423230	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000423230	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000398656	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000398656	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000398656	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000534366	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000534366	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000534366	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000528919	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000528919	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000528919	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000326134	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000326134	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
5CDS-5UTR	ENST00000326134	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
3UTR-5UTR	ENST00000527071	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
3UTR-5UTR	ENST00000527071	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
3UTR-5UTR	ENST00000527071	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
intron-5UTR	ENST00000544576	ENST00000526926		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
intron-5UTR	ENST00000544576	ENST00000458270		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
intron-5UTR	ENST00000544576	ENST00000501748		TCGA	LD	LUAD	TCGA-38-4630-01A	MROH1	chr8	145255444	+	ZNF623	chr8	144732068	+
Frame-shit	ENST00000475381	ENST00000310300		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
5CDS-5UTR	ENST00000475381	ENST00000497245		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
Frame-shit	ENST00000273512	ENST00000310300		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
5CDS-5UTR	ENST00000273512	ENST00000497245		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
Frame-shit	ENST00000538775	ENST00000310300		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
5CDS-5UTR	ENST00000538775	ENST00000497245		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
Frame-shit	ENST00000543711	ENST00000310300		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
5CDS-5UTR	ENST00000543711	ENST00000497245		TCGA	LD	LUAD	TCGA-38-4630-01A	NCEH1	chr3	172363413	-	LRCH4	chr7	100175535	-
5CDS-5UTR	ENST00000439951	ENST00000398174		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000439951	ENST00000340852		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000439951	ENST00000335574		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000439951	ENST00000376127		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000439951	ENST00000492709		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000313733	ENST00000398174		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000313733	ENST00000340852		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000313733	ENST00000335574		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000313733	ENST00000376127		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000313733	ENST00000492709		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000358053	ENST00000398174		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000358053	ENST00000340852		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000358053	ENST00000335574		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000358053	ENST00000376127		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000358053	ENST00000492709		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
intron-5UTR	ENST00000471817	ENST00000398174		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
intron-5UTR	ENST00000471817	ENST00000340852		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
intron-5UTR	ENST00000471817	ENST00000335574		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
intron-5UTR	ENST00000471817	ENST00000376127		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
intron-intron	ENST00000471817	ENST00000492709		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60848462	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000439951	ENST00000340513		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
5CDS-5UTR	ENST00000439951	ENST00000300403		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
5CDS-5UTR	ENST00000313733	ENST00000340513		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
5CDS-5UTR	ENST00000313733	ENST00000300403		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
5CDS-5UTR	ENST00000358053	ENST00000340513		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
5CDS-5UTR	ENST00000358053	ENST00000300403		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
intron-5UTR	ENST00000471817	ENST00000340513		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
intron-5UTR	ENST00000471817	ENST00000300403		TCGA	LD	LUAD	TCGA-38-4630-01A	OSBPL2	chr20	60847315	+	TPX2	chr20	30330344	+
Frame-shit	ENST00000430725	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000430725	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000430725	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000430725	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000430725	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000430725	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000325438	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000325438	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000325438	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000325438	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000325438	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000325438	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000458164	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000458164	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000458164	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000458164	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000458164	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000458164	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000447393	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000447393	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000447393	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000447393	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000447393	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000447393	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000547217	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000547217	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000547217	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000547217	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
Frame-shit	ENST00000547217	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
5CDS-3UTR	ENST00000547217	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551743	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551743	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551743	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551743	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551743	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3UTR	ENST00000551743	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551801	ENST00000487861		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551801	ENST00000471583		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551801	ENST00000487270		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551801	ENST00000488612		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3CDS	ENST00000551801	ENST00000390683		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
intron-3UTR	ENST00000551801	ENST00000469165		TCGA	LD	LUAD	TCGA-38-4630-01A	PACS2	chr14	105836237	+	RAD51B	chr14	68878141	+
5CDS-5UTR	ENST00000329399	ENST00000371227		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000371249		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000306402		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000353505		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000371246		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000347291		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000393949		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000371247		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000607232		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-intron	ENST00000329399	ENST00000371245		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-intron	ENST00000329399	ENST00000361941		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-intron	ENST00000329399	ENST00000277982		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-intron	ENST00000329399	ENST00000354106		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-intron	ENST00000329399	ENST00000371239		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-intron	ENST00000329399	ENST00000371241		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5CDS-5UTR	ENST00000329399	ENST00000474353		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000371227		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000371249		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000306402		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000353505		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000371246		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000347291		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000393949		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000371247		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000607232		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-intron	ENST00000477757	ENST00000371245		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-intron	ENST00000477757	ENST00000361941		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-intron	ENST00000477757	ENST00000277982		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-intron	ENST00000477757	ENST00000354106		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-intron	ENST00000477757	ENST00000371239		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-intron	ENST00000477757	ENST00000371241		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
5UTR-5UTR	ENST00000477757	ENST00000474353		TCGA	LD	LUAD	TCGA-38-4630-01A	PDLIM1	chr10	97006972	-	SORBS1	chr10	97200937	-
Frame-shit	ENST00000332830	ENST00000315392		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000332830	ENST00000493200		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000332830	ENST00000539608		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000332830	ENST00000444911		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000332830	ENST00000394316		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
Frame-shit	ENST00000577226	ENST00000315392		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577226	ENST00000493200		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577226	ENST00000539608		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577226	ENST00000444911		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577226	ENST00000394316		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
Frame-shit	ENST00000268756	ENST00000315392		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000268756	ENST00000493200		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000268756	ENST00000539608		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000268756	ENST00000444911		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000268756	ENST00000394316		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
intron-3CDS	ENST00000582655	ENST00000315392		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000582655	ENST00000493200		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000582655	ENST00000539608		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000582655	ENST00000444911		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
intron-5UTR	ENST00000582655	ENST00000394316		TCGA	LD	LUAD	TCGA-38-4630-01A	PHF12	chr17	27277083	-	PLXDC1	chr17	37265644	-
5CDS-intron	ENST00000487861	ENST00000329967		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000487861	ENST00000347067		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000471583	ENST00000329967		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000471583	ENST00000347067		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000487270	ENST00000329967		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000487270	ENST00000347067		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000488612	ENST00000329967		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000488612	ENST00000347067		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000390683	ENST00000329967		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5CDS-intron	ENST00000390683	ENST00000347067		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
3UTR-intron	ENST00000469165	ENST00000329967		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
3UTR-intron	ENST00000469165	ENST00000347067		TCGA	LD	LUAD	TCGA-38-4630-01A	RAD51B	chr14	68353921	+	SIVA1	chr14	105233127	+
5UTR-3CDS	ENST00000601241	ENST00000329285		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
5UTR-3CDS	ENST00000601241	ENST00000587354		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
5UTR-3CDS	ENST00000601241	ENST00000588760		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
intron-3CDS	ENST00000595326	ENST00000329285		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
intron-3CDS	ENST00000595326	ENST00000587354		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
intron-3CDS	ENST00000595326	ENST00000588760		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
intron-3CDS	ENST00000379204	ENST00000329285		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
intron-3CDS	ENST00000379204	ENST00000587354		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
intron-3CDS	ENST00000379204	ENST00000588760		TCGA	LD	LUAD	TCGA-38-4630-01A	SCGB2B2	chr19	35166535	-	ZNF599	chr19	35260460	-
5CDS-intron	ENST00000375759	ENST00000558331		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000375759	ENST00000251363		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000375759	ENST00000559450		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
5CDS-5UTR	ENST00000375759	ENST00000559336		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
5CDS-intron	ENST00000375759	ENST00000595722		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
intron-intron	ENST00000471538	ENST00000558331		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000471538	ENST00000251363		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000471538	ENST00000559450		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000471538	ENST00000559336		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
intron-intron	ENST00000471538	ENST00000595722		TCGA	LD	LUAD	TCGA-38-4630-01A	SPEN	chr1	16174645	+	CERS4	chr19	8315960	+
3UTR-3CDS	ENST00000310358	ENST00000262741		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-3CDS	ENST00000310358	ENST00000372006		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-3CDS	ENST00000310358	ENST00000340332		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-3CDS	ENST00000310358	ENST00000420542		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-3CDS	ENST00000310358	ENST00000354242		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-3CDS	ENST00000310358	ENST00000540385		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-3CDS	ENST00000310358	ENST00000423209		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
3UTR-5UTR	ENST00000310358	ENST00000488808		TCGA	LD	LUAD	TCGA-38-4630-01A	SPON1	chr11	14157114	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000257915	ENST00000604560		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000257915	ENST00000452142		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000257915	ENST00000267012		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000257915	ENST00000544402		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-intron	ENST00000257915	ENST00000603260		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000307660	ENST00000604560		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000307660	ENST00000452142		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000307660	ENST00000267012		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000307660	ENST00000544402		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-intron	ENST00000307660	ENST00000603260		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000549867	ENST00000604560		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000549867	ENST00000452142		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000549867	ENST00000267012		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000549867	ENST00000544402		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-intron	ENST00000549867	ENST00000603260		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000548115	ENST00000604560		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000548115	ENST00000452142		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000548115	ENST00000267012		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-3CDS	ENST00000548115	ENST00000544402		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
intron-intron	ENST00000548115	ENST00000603260		TCGA	LD	LUAD	TCGA-38-4630-01A	TFCP2	chr12	51488936	-	BIN2	chr12	51696925	-
5CDS-5UTR	ENST00000299697	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000299697	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000451102	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000451102	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5UTR-5UTR	ENST00000527800	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5UTR-5UTR	ENST00000527800	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000527284	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000527284	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
intron-5UTR	ENST00000568170	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
intron-5UTR	ENST00000568170	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000544898	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000544898	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000545043	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000545043	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000564917	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5CDS-5UTR	ENST00000564917	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5UTR-5UTR	ENST00000525974	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5UTR-5UTR	ENST00000525974	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
intron-5UTR	ENST00000417693	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
intron-5UTR	ENST00000417693	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5UTR-5UTR	ENST00000563369	ENST00000314586		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
5UTR-5UTR	ENST00000563369	ENST00000562887		TCGA	LD	LUAD	TCGA-38-4630-01A	TK2	chr16	66570867	-	EXOC3L1	chr16	67223586	-
Frame-shit	ENST00000557021	ENST00000409299		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000557021	ENST00000344022		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000557021	ENST00000217398		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371650	ENST00000409299		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371650	ENST00000344022		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371650	ENST00000217398		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371652	ENST00000409299		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371652	ENST00000344022		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371652	ENST00000217398		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371656	ENST00000409299		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371656	ENST00000344022		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
Frame-shit	ENST00000371656	ENST00000217398		TCGA	LD	LUAD	TCGA-38-4630-01A	TMEM189	chr20	48744512	-	PXMP4	chr20	32302542	-
In-frame	ENST00000394275	ENST00000355112		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
In-frame	ENST00000394275	ENST00000560509		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
5CDS-intron	ENST00000394275	ENST00000560136		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
In-frame	ENST00000418476	ENST00000355112		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
In-frame	ENST00000418476	ENST00000560509		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
5CDS-intron	ENST00000418476	ENST00000560136		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
intron-3CDS	ENST00000553671	ENST00000355112		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
intron-3CDS	ENST00000553671	ENST00000560509		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
intron-intron	ENST00000553671	ENST00000560136		TCGA	LD	LUAD	TCGA-38-4630-01A	UNC45A	chr15	91493845	+	BLM	chr15	91298041	+
Frame-shit	ENST00000609104	ENST00000298032		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000609104	ENST00000409983		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000609104	ENST00000409049		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000609104	ENST00000376528		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
5CDS-intron	ENST00000609104	ENST00000464017		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000277575	ENST00000298032		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000277575	ENST00000409983		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000277575	ENST00000409049		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000277575	ENST00000376528		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
5CDS-intron	ENST00000277575	ENST00000464017		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000379237	ENST00000298032		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000379237	ENST00000409983		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000379237	ENST00000409049		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
Frame-shit	ENST00000379237	ENST00000376528		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
5CDS-intron	ENST00000379237	ENST00000464017		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000443016	ENST00000298032		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000443016	ENST00000409983		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000443016	ENST00000409049		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000443016	ENST00000376528		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-intron	ENST00000443016	ENST00000464017		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000609853	ENST00000298032		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000609853	ENST00000409983		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000609853	ENST00000409049		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-3CDS	ENST00000609853	ENST00000376528		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
intron-intron	ENST00000609853	ENST00000464017		TCGA	LD	LUAD	TCGA-38-4630-01A	USP6NL	chr10	11531101	-	ARMC3	chr10	23297765	+
5CDS-5UTR	ENST00000254323	ENST00000586600		TCGA	LD	LUAD	TCGA-38-4630-01A	ZSWIM4	chr19	13934314	+	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000254323	ENST00000221554		TCGA	LD	LUAD	TCGA-38-4630-01A	ZSWIM4	chr19	13934314	+	CCDC130	chr19	13862422	+
5CDS-intron	ENST00000254323	ENST00000587019		TCGA	LD	LUAD	TCGA-38-4630-01A	ZSWIM4	chr19	13934314	+	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000440752	ENST00000586600		TCGA	LD	LUAD	TCGA-38-4630-01A	ZSWIM4	chr19	13934314	+	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000440752	ENST00000221554		TCGA	LD	LUAD	TCGA-38-4630-01A	ZSWIM4	chr19	13934314	+	CCDC130	chr19	13862422	+
5CDS-intron	ENST00000440752	ENST00000587019		TCGA	LD	LUAD	TCGA-38-4630-01A	ZSWIM4	chr19	13934314	+	CCDC130	chr19	13862422	+
intron-3CDS	ENST00000439406	ENST00000405709		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000439406	ENST00000331762		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000439406	ENST00000452895		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000439406	ENST00000415362		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000439406	ENST00000447215		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000439406	ENST00000437687		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000439406	ENST00000489381		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000439406	ENST00000450877		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000431949	ENST00000405709		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000431949	ENST00000331762		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000431949	ENST00000452895		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000431949	ENST00000415362		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000431949	ENST00000447215		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000431949	ENST00000437687		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000431949	ENST00000489381		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000431949	ENST00000450877		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000423317	ENST00000405709		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000423317	ENST00000331762		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000423317	ENST00000452895		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000423317	ENST00000415362		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000423317	ENST00000447215		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000423317	ENST00000437687		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000423317	ENST00000489381		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000423317	ENST00000450877		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000437931	ENST00000405709		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000437931	ENST00000331762		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000437931	ENST00000452895		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000437931	ENST00000415362		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000437931	ENST00000447215		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000437931	ENST00000437687		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000437931	ENST00000489381		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000437931	ENST00000450877		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000413396	ENST00000405709		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000413396	ENST00000331762		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000413396	ENST00000452895		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000413396	ENST00000415362		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000413396	ENST00000447215		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000413396	ENST00000437687		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000413396	ENST00000489381		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000413396	ENST00000450877		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000417629	ENST00000405709		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000417629	ENST00000331762		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000417629	ENST00000452895		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000417629	ENST00000415362		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000417629	ENST00000447215		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000417629	ENST00000437687		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000417629	ENST00000489381		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000417629	ENST00000450877		TCGA	LD	LUAD	TCGA-38-4631-01A	HCG20	chr6	30749903	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000230323	ENST00000361183		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000230323	ENST00000458284		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000230323	ENST00000490693		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-intron	ENST00000230323	ENST00000466023		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000358871	ENST00000361183		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000358871	ENST00000458284		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000358871	ENST00000490693		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-intron	ENST00000358871	ENST00000466023		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000420312	ENST00000361183		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000420312	ENST00000458284		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000420312	ENST00000490693		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-intron	ENST00000420312	ENST00000466023		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000403298	ENST00000361183		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000403298	ENST00000458284		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000403298	ENST00000490693		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-intron	ENST00000403298	ENST00000466023		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
5UTR-3CDS	ENST00000373033	ENST00000361183		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
5UTR-3CDS	ENST00000373033	ENST00000458284		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
5UTR-3CDS	ENST00000373033	ENST00000490693		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
5UTR-intron	ENST00000373033	ENST00000466023		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000394283	ENST00000361183		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000394283	ENST00000458284		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000394283	ENST00000490693		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
intron-intron	ENST00000394283	ENST00000466023		TCGA	LD	LUAD	TCGA-38-4631-01A	TFEB	chr6	41703088	-	CAPZA2	chr7	116528181	+
In-frame	ENST00000377452	ENST00000260264		TCGA	LD	LUAD	TCGA-38-4632-01A	DTD1	chr20	18608877	+	POU2F3	chr11	120186070	+
In-frame	ENST00000377452	ENST00000543440		TCGA	LD	LUAD	TCGA-38-4632-01A	DTD1	chr20	18608877	+	POU2F3	chr11	120186070	+
3UTR-3CDS	ENST00000494921	ENST00000260264		TCGA	LD	LUAD	TCGA-38-4632-01A	DTD1	chr20	18608877	+	POU2F3	chr11	120186070	+
3UTR-3CDS	ENST00000494921	ENST00000543440		TCGA	LD	LUAD	TCGA-38-4632-01A	DTD1	chr20	18608877	+	POU2F3	chr11	120186070	+
intron-3CDS	ENST00000355280	ENST00000538159		TCGA	LD	LUAD	TCGA-38-4632-01A	MINK1	chr17	4762623	+	USO1	chr4	76720775	+
intron-3CDS	ENST00000355280	ENST00000514213		TCGA	LD	LUAD	TCGA-38-4632-01A	MINK1	chr17	4762623	+	USO1	chr4	76720775	+
intron-3CDS	ENST00000347992	ENST00000538159		TCGA	LD	LUAD	TCGA-38-4632-01A	MINK1	chr17	4762623	+	USO1	chr4	76720775	+
intron-3CDS	ENST00000347992	ENST00000514213		TCGA	LD	LUAD	TCGA-38-4632-01A	MINK1	chr17	4762623	+	USO1	chr4	76720775	+
intron-3CDS	ENST00000453408	ENST00000538159		TCGA	LD	LUAD	TCGA-38-4632-01A	MINK1	chr17	4762623	+	USO1	chr4	76720775	+
intron-3CDS	ENST00000453408	ENST00000514213		TCGA	LD	LUAD	TCGA-38-4632-01A	MINK1	chr17	4762623	+	USO1	chr4	76720775	+
5CDS-5UTR	ENST00000217456	ENST00000376436		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000217456	ENST00000252979		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000217456	ENST00000538750		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000217456	ENST00000481610		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000447138	ENST00000376436		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000447138	ENST00000252979		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000447138	ENST00000538750		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
5CDS-5UTR	ENST00000447138	ENST00000481610		TCGA	LD	LUAD	TCGA-38-6178-01A	APMAP	chr20	24964539	-	ZNF337	chr20	25667102	-
Frame-shit	ENST00000446828	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
5CDS-intron	ENST00000446828	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
Frame-shit	ENST00000424227	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
5CDS-intron	ENST00000424227	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
Frame-shit	ENST00000443863	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
5CDS-intron	ENST00000443863	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
Frame-shit	ENST00000535426	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
5CDS-intron	ENST00000535426	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
Frame-shit	ENST00000265026	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
5CDS-intron	ENST00000265026	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
intron-3CDS	ENST00000448876	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
intron-intron	ENST00000448876	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
intron-3CDS	ENST00000454237	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
intron-intron	ENST00000454237	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
intron-3CDS	ENST00000438798	ENST00000296252		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
intron-intron	ENST00000438798	ENST00000424591		TCGA	LD	LUAD	TCGA-44-2656-01A	MAP3K13	chr3	185183593	+	LIPH	chr3	185270401	-
Frame-shit	ENST00000287218	ENST00000330636		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
Frame-shit	ENST00000287218	ENST00000468929		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-3UTR	ENST00000287218	ENST00000464010		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000287218	ENST00000480566		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000287218	ENST00000500576		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000287218	ENST00000606472		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
Frame-shit	ENST00000373391	ENST00000330636		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
Frame-shit	ENST00000373391	ENST00000468929		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-3UTR	ENST00000373391	ENST00000464010		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000373391	ENST00000480566		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000373391	ENST00000500576		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
5CDS-intron	ENST00000373391	ENST00000606472		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000463847	ENST00000330636		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000463847	ENST00000468929		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-3UTR	ENST00000463847	ENST00000464010		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000463847	ENST00000480566		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000463847	ENST00000500576		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-intron	ENST00000463847	ENST00000606472		TCGA	LD	LUAD	TCGA-44-2656-01A	ZFAND3	chr6	37897775	+	LYRM4	chr6	5109725	-
intron-3CDS	ENST00000263377	ENST00000008938		TCGA	LD	LUAD	TCGA-44-2657-01A	BRD4	chr19	15443101	-	PGLYRP1	chr19	46522905	-
intron-3CDS	ENST00000371835	ENST00000008938		TCGA	LD	LUAD	TCGA-44-2657-01A	BRD4	chr19	15443101	-	PGLYRP1	chr19	46522905	-
5UTR-3CDS	ENST00000360016	ENST00000008938		TCGA	LD	LUAD	TCGA-44-2657-01A	BRD4	chr19	15443101	-	PGLYRP1	chr19	46522905	-
intron-3CDS	ENST00000602230	ENST00000008938		TCGA	LD	LUAD	TCGA-44-2657-01A	BRD4	chr19	15443101	-	PGLYRP1	chr19	46522905	-
Frame-shit	ENST00000262027	ENST00000398073		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000262027	ENST00000548823		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
5CDS-5UTR	ENST00000262027	ENST00000547701		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000315473	ENST00000398073		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000315473	ENST00000548823		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
5CDS-5UTR	ENST00000315473	ENST00000547701		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
3UTR-3CDS	ENST00000447721	ENST00000398073		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
3UTR-3CDS	ENST00000447721	ENST00000548823		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
3UTR-5UTR	ENST00000447721	ENST00000547701		TCGA	LD	LUAD	TCGA-44-2657-01A	MARS	chr12	57898082	+	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000552432	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000552432	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000552432	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000552432	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000552432	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000552432	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000552432	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000552432	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000552432	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000547379	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000547379	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000547379	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000547379	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000547379	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000547379	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000547379	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000547379	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000547379	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000549465	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000549465	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000549465	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000549465	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000549465	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000549465	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000549465	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000549465	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000549465	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000552024	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000552024	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000552024	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000552024	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000552024	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000552024	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000552024	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000552024	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000552024	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000261187	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000261187	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000261187	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000261187	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000261187	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000261187	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000261187	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000261187	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000261187	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543448	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543448	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543448	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000543448	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000543448	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000543448	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000543448	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000543448	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000543448	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000549588	ENST00000552285		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000549588	ENST00000315970		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000549588	ENST00000439210		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000549588	ENST00000389146		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000549588	ENST00000413095		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000549588	ENST00000551035		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000549588	ENST00000435406		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000549588	ENST00000257966		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
intron-intron	ENST00000549588	ENST00000389142		TCGA	LD	LUAD	TCGA-44-2657-01A	SLC16A7	chr12	59990017	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000261716	ENST00000461831		TCGA	LD	LUAD	TCGA-44-2659-01A	TAOK1	chr17	27778698	+	ZNF385C	chr17	40186353	-
5CDS-intron	ENST00000261716	ENST00000436535		TCGA	LD	LUAD	TCGA-44-2659-01A	TAOK1	chr17	27778698	+	ZNF385C	chr17	40186353	-
5CDS-intron	ENST00000536202	ENST00000461831		TCGA	LD	LUAD	TCGA-44-2659-01A	TAOK1	chr17	27778698	+	ZNF385C	chr17	40186353	-
5CDS-intron	ENST00000536202	ENST00000436535		TCGA	LD	LUAD	TCGA-44-2659-01A	TAOK1	chr17	27778698	+	ZNF385C	chr17	40186353	-
In-frame	ENST00000252699	ENST00000599539		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000252699	ENST00000339471		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000252699	ENST00000251453		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000252699	ENST00000601655		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000424234	ENST00000599539		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000424234	ENST00000339471		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000424234	ENST00000251453		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000424234	ENST00000601655		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000390009	ENST00000599539		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000390009	ENST00000339471		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000390009	ENST00000251453		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
In-frame	ENST00000390009	ENST00000601655		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
intron-3CDS	ENST00000497637	ENST00000599539		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
intron-3CDS	ENST00000497637	ENST00000339471		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
intron-3CDS	ENST00000497637	ENST00000251453		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
intron-3CDS	ENST00000497637	ENST00000601655		TCGA	LD	LUAD	TCGA-44-2662-01A	ACTN4	chr19	39138547	+	RPS16	chr19	39926348	-
Frame-shit	ENST00000399336	ENST00000563197		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000399336	ENST00000304516		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000399336	ENST00000567705		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000399336	ENST00000567254		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
5CDS-intron	ENST00000399336	ENST00000563040		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000263012	ENST00000563197		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000263012	ENST00000304516		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000263012	ENST00000567705		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000263012	ENST00000567254		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
5CDS-intron	ENST00000263012	ENST00000563040		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000538468	ENST00000563197		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000538468	ENST00000304516		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000538468	ENST00000567705		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
Frame-shit	ENST00000538468	ENST00000567254		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
5CDS-intron	ENST00000538468	ENST00000563040		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
intron-3CDS	ENST00000572932	ENST00000563197		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
intron-3CDS	ENST00000572932	ENST00000304516		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
intron-3CDS	ENST00000572932	ENST00000567705		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
intron-3CDS	ENST00000572932	ENST00000567254		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
intron-intron	ENST00000572932	ENST00000563040		TCGA	LD	LUAD	TCGA-44-2662-01A	NOMO3	chr16	16350015	+	INO80E	chr16	30012079	+
intron-intron	ENST00000368508	ENST00000393043		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368508	ENST00000269122		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368508	ENST00000579456		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368508	ENST00000579815		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368507	ENST00000393043		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368507	ENST00000269122		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368507	ENST00000579456		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
intron-intron	ENST00000368507	ENST00000579815		TCGA	LD	LUAD	TCGA-44-2665-01A	ROS1	chr6	117609849	-	CLTC	chr17	57771089	+
5UTR-5UTR	ENST00000260956	ENST00000392259		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-5UTR	ENST00000260956	ENST00000392266		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-5UTR	ENST00000260956	ENST00000264274		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-intron	ENST00000260956	ENST00000432109		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-5UTR	ENST00000260956	ENST00000264275		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-5UTR	ENST00000260956	ENST00000392258		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-intron	ENST00000260956	ENST00000490682		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-intron	ENST00000260956	ENST00000358485		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
5UTR-5UTR	ENST00000260956	ENST00000323492		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000409333	ENST00000392259		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000409333	ENST00000392266		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000409333	ENST00000264274		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-intron	ENST00000409333	ENST00000432109		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000409333	ENST00000264275		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000409333	ENST00000392258		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-intron	ENST00000409333	ENST00000490682		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-intron	ENST00000409333	ENST00000358485		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000409333	ENST00000323492		TCGA	LD	LUAD	TCGA-44-2665-01A	SSB	chr2	170655486	+	CASP8	chr2	202131184	+
In-frame	ENST00000429989	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000429989	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000429989	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000429989	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000429989	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000481124	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000481124	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000481124	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000481124	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000481124	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000372164	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000372164	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372164	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372164	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372164	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000372158	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000372158	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372158	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372158	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372158	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000341863	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000341863	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000341863	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000341863	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000341863	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000372156	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000372156	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372156	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372156	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
5CDS-intron	ENST00000372156	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
intron-3CDS	ENST00000265450	ENST00000543351		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
intron-3CDS	ENST00000265450	ENST00000332211		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
intron-intron	ENST00000265450	ENST00000472137		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
intron-intron	ENST00000265450	ENST00000535553		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
intron-intron	ENST00000265450	ENST00000313132		TCGA	LD	LUAD	TCGA-44-2666-01A	TSPAN14	chr10	82249070	+	VDAC2	chr10	76989402	+
In-frame	ENST00000261772	ENST00000323786		TCGA	LD	LUAD	TCGA-44-2668-01A	AARS	chr16	70288524	-	COG4	chr16	70553634	-
In-frame	ENST00000261772	ENST00000393612		TCGA	LD	LUAD	TCGA-44-2668-01A	AARS	chr16	70288524	-	COG4	chr16	70553634	-
In-frame	ENST00000261772	ENST00000564653		TCGA	LD	LUAD	TCGA-44-2668-01A	AARS	chr16	70288524	-	COG4	chr16	70553634	-
intron-3CDS	ENST00000564359	ENST00000323786		TCGA	LD	LUAD	TCGA-44-2668-01A	AARS	chr16	70288524	-	COG4	chr16	70553634	-
intron-3CDS	ENST00000564359	ENST00000393612		TCGA	LD	LUAD	TCGA-44-2668-01A	AARS	chr16	70288524	-	COG4	chr16	70553634	-
intron-3CDS	ENST00000564359	ENST00000564653		TCGA	LD	LUAD	TCGA-44-2668-01A	AARS	chr16	70288524	-	COG4	chr16	70553634	-
In-frame	ENST00000300952	ENST00000263620		TCGA	LD	LUAD	TCGA-44-2668-01A	MIDN	chr19	1250528	+	ARID3A	chr19	971878	+
5CDS-intron	ENST00000300952	ENST00000592216		TCGA	LD	LUAD	TCGA-44-2668-01A	MIDN	chr19	1250528	+	ARID3A	chr19	971878	+
In-frame	ENST00000591446	ENST00000263620		TCGA	LD	LUAD	TCGA-44-2668-01A	MIDN	chr19	1250528	+	ARID3A	chr19	971878	+
5CDS-intron	ENST00000591446	ENST00000592216		TCGA	LD	LUAD	TCGA-44-2668-01A	MIDN	chr19	1250528	+	ARID3A	chr19	971878	+
Frame-shit	ENST00000334955	ENST00000248594		TCGA	LD	LUAD	TCGA-44-2668-01A	RSBN1L	chr7	77398120	+	PTPN12	chr7	77214860	+
Frame-shit	ENST00000334955	ENST00000415482		TCGA	LD	LUAD	TCGA-44-2668-01A	RSBN1L	chr7	77398120	+	PTPN12	chr7	77214860	+
5CDS-5UTR	ENST00000334955	ENST00000435495		TCGA	LD	LUAD	TCGA-44-2668-01A	RSBN1L	chr7	77398120	+	PTPN12	chr7	77214860	+
Frame-shit	ENST00000445288	ENST00000248594		TCGA	LD	LUAD	TCGA-44-2668-01A	RSBN1L	chr7	77398120	+	PTPN12	chr7	77214860	+
Frame-shit	ENST00000445288	ENST00000415482		TCGA	LD	LUAD	TCGA-44-2668-01A	RSBN1L	chr7	77398120	+	PTPN12	chr7	77214860	+
5CDS-5UTR	ENST00000445288	ENST00000435495		TCGA	LD	LUAD	TCGA-44-2668-01A	RSBN1L	chr7	77398120	+	PTPN12	chr7	77214860	+
5CDS-3UTR	ENST00000399537	ENST00000539903		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000399537	ENST00000337579		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000399537	ENST00000404406		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000399537	ENST00000405415		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000399537	ENST00000441023		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-5UTR	ENST00000399537	ENST00000535104		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000430969	ENST00000539903		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000430969	ENST00000337579		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000430969	ENST00000404406		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000430969	ENST00000405415		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-3UTR	ENST00000430969	ENST00000441023		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5CDS-5UTR	ENST00000430969	ENST00000535104		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
intron-3UTR	ENST00000399434	ENST00000539903		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
intron-3UTR	ENST00000399434	ENST00000337579		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
intron-3UTR	ENST00000399434	ENST00000404406		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
intron-3UTR	ENST00000399434	ENST00000405415		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
intron-3UTR	ENST00000399434	ENST00000441023		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
intron-5UTR	ENST00000399434	ENST00000535104		TCGA	LD	LUAD	TCGA-44-2668-01A	TNRC18	chr7	5460691	-	RSPH10B	chr7	5968025	-
5UTR-intron	ENST00000544892	ENST00000474210		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5UTR-intron	ENST00000544892	ENST00000394231		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5UTR-intron	ENST00000544892	ENST00000577810		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000320031	ENST00000474210		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000320031	ENST00000394231		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000320031	ENST00000577810		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000007722	ENST00000474210		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000007722	ENST00000394231		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000007722	ENST00000577810		TCGA	LD	LUAD	TCGA-44-3396-01A	ITGA3	chr17	48134009	+	MIEN1	chr17	37886544	-
In-frame	ENST00000393193	ENST00000431281		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000393193	ENST00000591859		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000393193	ENST00000586346		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
Frame-shit	ENST00000393193	ENST00000398322		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000393193	ENST00000592162		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000393193	ENST00000376955		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000393193	ENST00000321854		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000393193	ENST00000591136		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000376392	ENST00000431281		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000376392	ENST00000591859		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000376392	ENST00000586346		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
Frame-shit	ENST00000376392	ENST00000398322		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000376392	ENST00000592162		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000376392	ENST00000376955		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000376392	ENST00000321854		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000376392	ENST00000591136		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000555572	ENST00000431281		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000555572	ENST00000591859		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
In-frame	ENST00000555572	ENST00000586346		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
Frame-shit	ENST00000555572	ENST00000398322		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000555572	ENST00000592162		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000555572	ENST00000376955		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000555572	ENST00000321854		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-intron	ENST00000555572	ENST00000591136		TCGA	LD	LUAD	TCGA-44-3396-01A	NME2	chr17	49244317	+	ACBD4	chr17	43216388	+
5CDS-5UTR	ENST00000423245	ENST00000225726		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5CDS-5UTR	ENST00000423245	ENST00000403162		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5CDS-5UTR	ENST00000423245	ENST00000582252		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5CDS-5UTR	ENST00000317905	ENST00000225726		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5CDS-5UTR	ENST00000317905	ENST00000403162		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5CDS-5UTR	ENST00000317905	ENST00000582252		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000420326	ENST00000225726		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000420326	ENST00000403162		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000420326	ENST00000582252		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000340830	ENST00000225726		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000340830	ENST00000403162		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000340830	ENST00000582252		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000584999	ENST00000225726		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000584999	ENST00000403162		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
intron-5UTR	ENST00000584999	ENST00000582252		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5UTR-5UTR	ENST00000443199	ENST00000225726		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5UTR-5UTR	ENST00000443199	ENST00000403162		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
5UTR-5UTR	ENST00000443199	ENST00000582252		TCGA	LD	LUAD	TCGA-44-3396-01A	RECQL5	chr17	73624298	-	CCDC47	chr17	61843554	-
Frame-shit	ENST00000253719	ENST00000268379		TCGA	LD	LUAD	TCGA-44-3398-01A	NAPSA	chr19	50868796	-	UQCRC2	chr16	21973781	+
Frame-shit	ENST00000253719	ENST00000561553		TCGA	LD	LUAD	TCGA-44-3398-01A	NAPSA	chr19	50868796	-	UQCRC2	chr16	21973781	+
Frame-shit	ENST00000378847	ENST00000260746		TCGA	LD	LUAD	TCGA-44-3917-01A	CAMK1D	chr10	12833232	+	ARL3	chr10	104465246	-
intron-3CDS	ENST00000487696	ENST00000260746		TCGA	LD	LUAD	TCGA-44-3917-01A	CAMK1D	chr10	12833232	+	ARL3	chr10	104465246	-
Frame-shit	ENST00000378845	ENST00000260746		TCGA	LD	LUAD	TCGA-44-3917-01A	CAMK1D	chr10	12833232	+	ARL3	chr10	104465246	-
5CDS-intron	ENST00000440768	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000440768	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000440768	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000359197	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000359197	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000359197	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000343574	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000343574	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000343574	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000331340	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000331340	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000331340	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000349824	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000349824	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000349824	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000357364	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000357364	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000357364	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000346667	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000346667	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000346667	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000438033	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000438033	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000438033	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000439701	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000439701	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000439701	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000413698	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-intron	ENST00000413698	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
5CDS-3UTR	ENST00000413698	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
3UTR-intron	ENST00000492782	ENST00000403050		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
3UTR-intron	ENST00000492782	ENST00000445996		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
3UTR-3UTR	ENST00000492782	ENST00000469407		TCGA	LD	LUAD	TCGA-44-3917-01A	IKZF1	chr7	50367353	+	PHF14	chr7	11150977	+
intron-5UTR	ENST00000543923	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000543923	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000543923	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000435985	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000435985	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000435985	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000280020	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000280020	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000280020	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000591619	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000591619	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000591619	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
5UTR-5UTR	ENST00000586135	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
5UTR-3UTR	ENST00000586135	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
5UTR-5UTR	ENST00000586135	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000592521	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000592521	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000592521	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000586501	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000586501	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000586501	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000601437	ENST00000399302		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-3UTR	ENST00000601437	ENST00000527250		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
intron-5UTR	ENST00000601437	ENST00000527788		TCGA	LD	LUAD	TCGA-44-3917-01A	KIAA1328	chr18	34505005	+	QSER1	chr11	32948703	+
5CDS-intron	ENST00000399302	ENST00000543923		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000399302	ENST00000435985		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000399302	ENST00000280020		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000399302	ENST00000591619		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-5UTR	ENST00000399302	ENST00000586135		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000399302	ENST00000592521		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000399302	ENST00000586501		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000399302	ENST00000601437		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000543923		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000435985		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000280020		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000591619		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-5UTR	ENST00000527250	ENST00000586135		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000592521		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000586501		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
intron-intron	ENST00000527250	ENST00000601437		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000543923		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000435985		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000280020		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000591619		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-5UTR	ENST00000527788	ENST00000586135		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000592521		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000586501		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-intron	ENST00000527788	ENST00000601437		TCGA	LD	LUAD	TCGA-44-3917-01A	QSER1	chr11	32979632	+	KIAA1328	chr18	34504875	+
5CDS-5UTR	ENST00000264235	ENST00000319560		TCGA	LD	LUAD	TCGA-44-3918-01A	GSK3B	chr3	119595260	-	TMEM31	chrX	102967164	+
5CDS-5UTR	ENST00000316626	ENST00000319560		TCGA	LD	LUAD	TCGA-44-3918-01A	GSK3B	chr3	119595260	-	TMEM31	chrX	102967164	+
5UTR-5UTR	ENST00000473886	ENST00000319560		TCGA	LD	LUAD	TCGA-44-3918-01A	GSK3B	chr3	119595260	-	TMEM31	chrX	102967164	+
intron-intron	ENST00000307980	ENST00000310137		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000307980	ENST00000393979		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000307980	ENST00000409372		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000307980	ENST00000443702		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000307980	ENST00000409738		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000307980	ENST00000461478		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000535644	ENST00000310137		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000535644	ENST00000393979		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000535644	ENST00000409372		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000535644	ENST00000443702		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000535644	ENST00000409738		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
intron-intron	ENST00000535644	ENST00000461478		TCGA	LD	LUAD	TCGA-44-3918-01A	RAD9A	chr11	67098453	+	RBM14	chr11	66386896	+
5UTR-3CDS	ENST00000395246	ENST00000379380		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000395246	ENST00000510516		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000395246	ENST00000507584		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-intron	ENST00000395246	ENST00000521227		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
3UTR-3CDS	ENST00000504701	ENST00000379380		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
3UTR-3CDS	ENST00000504701	ENST00000510516		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
3UTR-3CDS	ENST00000504701	ENST00000507584		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
3UTR-intron	ENST00000504701	ENST00000521227		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000503291	ENST00000379380		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000503291	ENST00000510516		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000503291	ENST00000507584		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-intron	ENST00000503291	ENST00000521227		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000360515	ENST00000379380		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000360515	ENST00000510516		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000360515	ENST00000507584		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-intron	ENST00000360515	ENST00000521227		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000505065	ENST00000379380		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000505065	ENST00000510516		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-3CDS	ENST00000505065	ENST00000507584		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
5UTR-intron	ENST00000505065	ENST00000521227		TCGA	LD	LUAD	TCGA-44-4112-01A	CDC42SE2	chr5	130599859	+	LYRM7	chr5	130515788	+
intron-5UTR	ENST00000324288	ENST00000389397		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-5UTR	ENST00000324288	ENST00000389398		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-intron	ENST00000324288	ENST00000563755		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-5UTR	ENST00000381835	ENST00000389397		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-5UTR	ENST00000381835	ENST00000389398		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-intron	ENST00000381835	ENST00000563755		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-5UTR	ENST00000537380	ENST00000389397		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-5UTR	ENST00000537380	ENST00000389398		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
intron-intron	ENST00000537380	ENST00000563755		TCGA	LD	LUAD	TCGA-44-4112-01A	CIITA	chr16	10972899	+	VWA3A	chr16	22151475	+
In-frame	ENST00000229239	ENST00000315579		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
In-frame	ENST00000229239	ENST00000545962		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5CDS-intron	ENST00000229239	ENST00000542492		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5UTR-3CDS	ENST00000396856	ENST00000315579		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5UTR-3CDS	ENST00000396856	ENST00000545962		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5UTR-intron	ENST00000396856	ENST00000542492		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
In-frame	ENST00000396861	ENST00000315579		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
In-frame	ENST00000396861	ENST00000545962		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5CDS-intron	ENST00000396861	ENST00000542492		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
In-frame	ENST00000396859	ENST00000315579		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
In-frame	ENST00000396859	ENST00000545962		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5CDS-intron	ENST00000396859	ENST00000542492		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
intron-3CDS	ENST00000396858	ENST00000315579		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
intron-3CDS	ENST00000396858	ENST00000545962		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
intron-intron	ENST00000396858	ENST00000542492		TCGA	LD	LUAD	TCGA-44-4112-01A	GAPDH	chr12	6644027	+	NCAPD2	chr12	6637339	+
5CDS-intron	ENST00000285737	ENST00000399568		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000285737	ENST00000542103		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000285737	ENST00000399562		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000285737	ENST00000333059		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000535754	ENST00000399568		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000535754	ENST00000542103		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000535754	ENST00000399562		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
5CDS-intron	ENST00000535754	ENST00000333059		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
intron-intron	ENST00000564259	ENST00000399568		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
intron-intron	ENST00000564259	ENST00000542103		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
intron-intron	ENST00000564259	ENST00000399562		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
intron-intron	ENST00000564259	ENST00000333059		TCGA	LD	LUAD	TCGA-44-4112-01A	LONP2	chr16	48337216	+	C22orf39	chr22	19398301	-
In-frame	ENST00000525364	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000270176	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000420247	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000533862	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000279270	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000524944	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000527009	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-3CDS	ENST00000534462	ENST00000317568		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000531296		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000355991		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000416776		TCGA	LD	LUAD	TCGA-44-4112-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5UTR-3CDS	ENST00000474596	ENST00000291536		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
5UTR-intron	ENST00000474596	ENST00000398352		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
In-frame	ENST00000398405	ENST00000291536		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
5CDS-intron	ENST00000398405	ENST00000398352		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
Frame-shit	ENST00000433957	ENST00000291536		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
5CDS-intron	ENST00000433957	ENST00000398352		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
Frame-shit	ENST00000291532	ENST00000291536		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
5CDS-intron	ENST00000291532	ENST00000398352		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
In-frame	ENST00000380399	ENST00000291536		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
5CDS-intron	ENST00000380399	ENST00000398352		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
intron-3CDS	ENST00000398397	ENST00000291536		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
intron-intron	ENST00000398397	ENST00000398352		TCGA	LD	LUAD	TCGA-44-4112-01A	TMPRSS3	chr21	43795825	-	RSPH1	chr21	43913189	-
Frame-shit	ENST00000341695	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000341695	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000341695	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000341695	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000341695	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5CDS-intron	ENST00000341695	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000348706	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000348706	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000348706	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000348706	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000348706	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5CDS-intron	ENST00000348706	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000432483	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000432483	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000432483	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000432483	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000432483	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5CDS-intron	ENST00000432483	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000354147	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000354147	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000354147	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000354147	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000354147	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5CDS-intron	ENST00000354147	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000380004	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000380004	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000380004	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000380004	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000380004	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5CDS-intron	ENST00000380004	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000357415	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000357415	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000357415	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000357415	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000357415	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5CDS-intron	ENST00000357415	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000509426	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000509426	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000509426	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000509426	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000509426	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-intron	ENST00000509426	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000310267	ENST00000273980		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000310267	ENST00000432496		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000310267	ENST00000361687		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000310267	ENST00000394706		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-3CDS	ENST00000310267	ENST00000394708		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
5UTR-intron	ENST00000310267	ENST00000514689		TCGA	LD	LUAD	TCGA-44-5643-01A	PPA2	chr4	106395051	-	TBCK	chr4	107016798	-
Frame-shit	ENST00000543086	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
Frame-shit	ENST00000546231	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
Frame-shit	ENST00000397203	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
Frame-shit	ENST00000360905	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
Frame-shit	ENST00000589028	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
Frame-shit	ENST00000355446	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
intron-3CDS	ENST00000536573	ENST00000456783		TCGA	LD	LUAD	TCGA-44-5644-01A	ERC1	chr12	1399178	+	ZNF492	chr19	22846602	+
5UTR-3CDS	ENST00000414282	ENST00000264156		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
5UTR-intron	ENST00000414282	ENST00000492091		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
5UTR-3CDS	ENST00000416970	ENST00000264156		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
5UTR-intron	ENST00000416970	ENST00000492091		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
5UTR-3CDS	ENST00000436596	ENST00000264156		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
5UTR-intron	ENST00000436596	ENST00000492091		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-3CDS	ENST00000447221	ENST00000264156		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-intron	ENST00000447221	ENST00000492091		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-3CDS	ENST00000362567	ENST00000264156		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-intron	ENST00000362567	ENST00000492091		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-3CDS	ENST00000391185	ENST00000264156		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-intron	ENST00000391185	ENST00000492091		TCGA	LD	LUAD	TCGA-44-5644-01A	SNHG7	chr9	139619507	-	MCM6	chr2	136630413	-
intron-3CDS	ENST00000507941	ENST00000353139		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000507941	ENST00000360679		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000507941	ENST00000394406		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000507941	ENST00000335166		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-intron	ENST00000507941	ENST00000416895		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-intron	ENST00000507941	ENST00000361253		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-intron	ENST00000507941	ENST00000588142		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-intron	ENST00000507941	ENST00000589665		TCGA	LD	LUAD	TCGA-44-6145-01A	ANKRD30BP2	chr21	14433204	+	ACACA	chr17	35454919	-
intron-3CDS	ENST00000426333	ENST00000461719		TCGA	LD	LUAD	TCGA-44-6145-01A	EFTUD2	chr17	42931061	-	IGHJ4	chr14	106330466	-
intron-3CDS	ENST00000592576	ENST00000461719		TCGA	LD	LUAD	TCGA-44-6145-01A	EFTUD2	chr17	42931061	-	IGHJ4	chr14	106330466	-
intron-3CDS	ENST00000591382	ENST00000461719		TCGA	LD	LUAD	TCGA-44-6145-01A	EFTUD2	chr17	42931061	-	IGHJ4	chr14	106330466	-
intron-3CDS	ENST00000402521	ENST00000461719		TCGA	LD	LUAD	TCGA-44-6145-01A	EFTUD2	chr17	42931061	-	IGHJ4	chr14	106330466	-
intron-3CDS	ENST00000589211	ENST00000461719		TCGA	LD	LUAD	TCGA-44-6145-01A	EFTUD2	chr17	42931061	-	IGHJ4	chr14	106330466	-
Frame-shit	ENST00000602661	ENST00000374692		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000602661	ENST00000374688		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000223528	ENST00000374692		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000223528	ENST00000374688		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000540160	ENST00000374692		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000540160	ENST00000374688		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000448551	ENST00000374692		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000448551	ENST00000374688		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000357998	ENST00000374692		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
Frame-shit	ENST00000357998	ENST00000374688		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000490134	ENST00000374692		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000490134	ENST00000374688		TCGA	LD	LUAD	TCGA-44-6146-01A	FKTN	chr9	108366773	+	TMEM38B	chr9	108536146	+
intron-3CDS	ENST00000356191	ENST00000433674		TCGA	LD	LUAD	TCGA-44-6146-01A	MUC5AC	chr11	1214885	+	CAPN2	chr1	223954069	+
intron-3CDS	ENST00000356191	ENST00000295006		TCGA	LD	LUAD	TCGA-44-6146-01A	MUC5AC	chr11	1214885	+	CAPN2	chr1	223954069	+
intron-3UTR	ENST00000356191	ENST00000474026		TCGA	LD	LUAD	TCGA-44-6146-01A	MUC5AC	chr11	1214885	+	CAPN2	chr1	223954069	+
3UTR-3CDS	ENST00000358378	ENST00000433674		TCGA	LD	LUAD	TCGA-44-6146-01A	MUC5AC	chr11	1214885	+	CAPN2	chr1	223954069	+
3UTR-3CDS	ENST00000358378	ENST00000295006		TCGA	LD	LUAD	TCGA-44-6146-01A	MUC5AC	chr11	1214885	+	CAPN2	chr1	223954069	+
3UTR-3UTR	ENST00000358378	ENST00000474026		TCGA	LD	LUAD	TCGA-44-6146-01A	MUC5AC	chr11	1214885	+	CAPN2	chr1	223954069	+
In-frame	ENST00000331479	ENST00000329021		TCGA	LD	LUAD	TCGA-44-6147-01A	SMDT1	chr22	42475958	+	NFAM1	chr22	42783084	-
intron-5UTR	ENST00000408388	ENST00000322611		TCGA	LD	LUAD	TCGA-44-6774-01A	PVT1	chr8	129022690	+	BASP1	chr5	17275317	+
Frame-shit	ENST00000231061	ENST00000236671		TCGA	LD	LUAD	TCGA-44-6774-01A	SPARC	chr5	151051134	-	CTSD	chr11	1775110	-
intron-3CDS	ENST00000537849	ENST00000236671		TCGA	LD	LUAD	TCGA-44-6774-01A	SPARC	chr5	151051134	-	CTSD	chr11	1775110	-
5UTR-3CDS	ENST00000437398	ENST00000399782		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-3CDS	ENST00000437398	ENST00000317582		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-5UTR	ENST00000437398	ENST00000543133		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000437398	ENST00000538149		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000437398	ENST00000337612		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000437398	ENST00000493680		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000437398	ENST00000355028		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000437398	ENST00000418951		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000437398	ENST00000485631		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-3CDS	ENST00000314328	ENST00000399782		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-3CDS	ENST00000314328	ENST00000317582		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-5UTR	ENST00000314328	ENST00000543133		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000314328	ENST00000538149		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000314328	ENST00000337612		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000314328	ENST00000493680		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000314328	ENST00000355028		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000314328	ENST00000418951		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000314328	ENST00000485631		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-3CDS	ENST00000541492	ENST00000399782		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-3CDS	ENST00000541492	ENST00000317582		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-5UTR	ENST00000541492	ENST00000543133		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000541492	ENST00000538149		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000541492	ENST00000337612		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000541492	ENST00000493680		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000541492	ENST00000355028		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000541492	ENST00000418951		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5UTR-intron	ENST00000541492	ENST00000485631		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-3CDS	ENST00000416735	ENST00000399782		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-3CDS	ENST00000416735	ENST00000317582		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-5UTR	ENST00000416735	ENST00000543133		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-intron	ENST00000416735	ENST00000538149		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-intron	ENST00000416735	ENST00000337612		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-intron	ENST00000416735	ENST00000493680		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-intron	ENST00000416735	ENST00000355028		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-intron	ENST00000416735	ENST00000418951		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
3UTR-intron	ENST00000416735	ENST00000485631		TCGA	LD	LUAD	TCGA-44-6774-01A	SPECC1L	chr22	24666951	+	BCL2L13	chr22	18178907	+
5CDS-5UTR	ENST00000419617	ENST00000220763		TCGA	LD	LUAD	TCGA-44-6775-01A	STK3	chr8	99608260	-	CPQ	chr8	97797092	+
5CDS-intron	ENST00000419617	ENST00000529551		TCGA	LD	LUAD	TCGA-44-6775-01A	STK3	chr8	99608260	-	CPQ	chr8	97797092	+
5CDS-5UTR	ENST00000523601	ENST00000220763		TCGA	LD	LUAD	TCGA-44-6775-01A	STK3	chr8	99608260	-	CPQ	chr8	97797092	+
5CDS-intron	ENST00000523601	ENST00000529551		TCGA	LD	LUAD	TCGA-44-6775-01A	STK3	chr8	99608260	-	CPQ	chr8	97797092	+
5UTR-5UTR	ENST00000521768	ENST00000220763		TCGA	LD	LUAD	TCGA-44-6775-01A	STK3	chr8	99608260	-	CPQ	chr8	97797092	+
5UTR-intron	ENST00000521768	ENST00000529551		TCGA	LD	LUAD	TCGA-44-6775-01A	STK3	chr8	99608260	-	CPQ	chr8	97797092	+
5CDS-3UTR	ENST00000253108	ENST00000519937		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000253108	ENST00000342375		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000253108	ENST00000393822		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000253108	ENST00000409383		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
intron-3UTR	ENST00000587168	ENST00000519937		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
intron-3UTR	ENST00000587168	ENST00000342375		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
intron-3UTR	ENST00000587168	ENST00000393822		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
intron-intron	ENST00000587168	ENST00000409383		TCGA	LD	LUAD	TCGA-44-6776-01A	EIF3G	chr19	10229344	-	SFTPB	chr2	85886805	-
In-frame	ENST00000227266	ENST00000455756		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
In-frame	ENST00000227266	ENST00000418177		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
Frame-shit	ENST00000227266	ENST00000305447		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
Frame-shit	ENST00000227266	ENST00000305432		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000227266	ENST00000393297		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000227266	ENST00000393294		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
In-frame	ENST00000524463	ENST00000455756		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
In-frame	ENST00000524463	ENST00000418177		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
Frame-shit	ENST00000524463	ENST00000305447		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
Frame-shit	ENST00000524463	ENST00000305432		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000524463	ENST00000393297		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000524463	ENST00000393294		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
In-frame	ENST00000529974	ENST00000455756		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
In-frame	ENST00000529974	ENST00000418177		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
Frame-shit	ENST00000529974	ENST00000305447		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
Frame-shit	ENST00000529974	ENST00000305432		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000529974	ENST00000393297		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-intron	ENST00000529974	ENST00000393294		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000393301	ENST00000455756		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000393301	ENST00000418177		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000393301	ENST00000305447		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5UTR-3CDS	ENST00000393301	ENST00000305432		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5UTR-intron	ENST00000393301	ENST00000393297		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5UTR-intron	ENST00000393301	ENST00000393294		TCGA	LD	LUAD	TCGA-44-7660-01A	CTSC	chr11	88068105	-	GRM5	chr11	88242672	-
5CDS-5UTR	ENST00000360403	ENST00000307750		TCGA	LD	LUAD	TCGA-44-7660-01A	EIF2B3	chr1	45443987	-	ZBTB5	chr9	37442552	-
5CDS-5UTR	ENST00000372183	ENST00000307750		TCGA	LD	LUAD	TCGA-44-7660-01A	EIF2B3	chr1	45443987	-	ZBTB5	chr9	37442552	-
5UTR-5UTR	ENST00000480675	ENST00000307750		TCGA	LD	LUAD	TCGA-44-7660-01A	EIF2B3	chr1	45443987	-	ZBTB5	chr9	37442552	-
In-frame	ENST00000288235	ENST00000396060		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
5CDS-5UTR	ENST00000288235	ENST00000267869		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
5CDS-intron	ENST00000288235	ENST00000396064		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
5CDS-intron	ENST00000288235	ENST00000396063		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
5CDS-intron	ENST00000288235	ENST00000396061		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
5CDS-intron	ENST00000288235	ENST00000484743		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
intron-3CDS	ENST00000558814	ENST00000396060		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
intron-5UTR	ENST00000558814	ENST00000267869		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
intron-intron	ENST00000558814	ENST00000396064		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
intron-intron	ENST00000558814	ENST00000396063		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
intron-intron	ENST00000558814	ENST00000396061		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
intron-intron	ENST00000558814	ENST00000484743		TCGA	LD	LUAD	TCGA-44-7660-01A	MYO1E	chr15	59664697	-	GTF2A2	chr15	59934461	-
5CDS-5UTR	ENST00000562955	ENST00000360403		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
5CDS-5UTR	ENST00000562955	ENST00000372183		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
5CDS-5UTR	ENST00000562955	ENST00000480675		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
5CDS-5UTR	ENST00000372442	ENST00000360403		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
5CDS-5UTR	ENST00000372442	ENST00000372183		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
5CDS-5UTR	ENST00000372442	ENST00000480675		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000310739	ENST00000360403		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000310739	ENST00000372183		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000310739	ENST00000480675		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000372450	ENST00000360403		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000372450	ENST00000372183		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000372450	ENST00000480675		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000471177	ENST00000360403		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000471177	ENST00000372183		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
intron-5UTR	ENST00000471177	ENST00000480675		TCGA	LD	LUAD	TCGA-44-7660-01A	SZT2	chr1	43898110	+	EIF2B3	chr1	45446849	-
5CDS-5UTR	ENST00000373664	ENST00000430275		TCGA	LD	LUAD	TCGA-44-7661-01A	RBL1	chr20	35717392	-	FER1L4	chr20	34172015	-
5CDS-5UTR	ENST00000344359	ENST00000430275		TCGA	LD	LUAD	TCGA-44-7661-01A	RBL1	chr20	35717392	-	FER1L4	chr20	34172015	-
intron-5UTR	ENST00000598590	ENST00000430275		TCGA	LD	LUAD	TCGA-44-7661-01A	RBL1	chr20	35717392	-	FER1L4	chr20	34172015	-
intron-intron	ENST00000262878	ENST00000305978		TCGA	LD	LUAD	TCGA-44-7661-01A	SAMHD1	chr20	35580018	-	SCAND1	chr20	34543018	-
intron-5UTR	ENST00000262878	ENST00000373991		TCGA	LD	LUAD	TCGA-44-7661-01A	SAMHD1	chr20	35580018	-	SCAND1	chr20	34543018	-
intron-intron	ENST00000373694	ENST00000305978		TCGA	LD	LUAD	TCGA-44-7661-01A	SAMHD1	chr20	35580018	-	SCAND1	chr20	34543018	-
intron-5UTR	ENST00000373694	ENST00000373991		TCGA	LD	LUAD	TCGA-44-7661-01A	SAMHD1	chr20	35580018	-	SCAND1	chr20	34543018	-
In-frame	ENST00000340473	ENST00000256413		TCGA	LD	LUAD	TCGA-44-7667-01A	GTF2F2	chr13	45781640	+	CTIF	chr18	46284290	+
In-frame	ENST00000340473	ENST00000382998		TCGA	LD	LUAD	TCGA-44-7667-01A	GTF2F2	chr13	45781640	+	CTIF	chr18	46284290	+
5CDS-intron	ENST00000340473	ENST00000592658		TCGA	LD	LUAD	TCGA-44-7667-01A	GTF2F2	chr13	45781640	+	CTIF	chr18	46284290	+
3UTR-3CDS	ENST00000494087	ENST00000256413		TCGA	LD	LUAD	TCGA-44-7667-01A	GTF2F2	chr13	45781640	+	CTIF	chr18	46284290	+
3UTR-3CDS	ENST00000494087	ENST00000382998		TCGA	LD	LUAD	TCGA-44-7667-01A	GTF2F2	chr13	45781640	+	CTIF	chr18	46284290	+
3UTR-intron	ENST00000494087	ENST00000592658		TCGA	LD	LUAD	TCGA-44-7667-01A	GTF2F2	chr13	45781640	+	CTIF	chr18	46284290	+
5UTR-3CDS	ENST00000265109	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-intron	ENST00000265109	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-intron	ENST00000265109	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-intron	ENST00000265109	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-3CDS	ENST00000512629	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-intron	ENST00000512629	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-intron	ENST00000512629	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5UTR-intron	ENST00000512629	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000428746	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000428746	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000428746	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000428746	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000503673	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000503673	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000503673	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000503673	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000515799	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000515799	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000515799	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000515799	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000506376	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000506376	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000506376	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000506376	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000507276	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000507276	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000507276	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000507276	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-3CDS	ENST00000397449	ENST00000320895		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000397449	ENST00000507807		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000397449	ENST00000320927		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
intron-intron	ENST00000397449	ENST00000506641		TCGA	LD	LUAD	TCGA-44-7667-01A	RAI14	chr5	34656580	+	CLPTM1L	chr5	1341975	-
5CDS-intron	ENST00000302516	ENST00000264012		TCGA	LD	LUAD	TCGA-44-7667-01A	SF3B3	chr16	70578436	+	CDH3	chr16	89245824	+
5CDS-intron	ENST00000302516	ENST00000429102		TCGA	LD	LUAD	TCGA-44-7667-01A	SF3B3	chr16	70578436	+	CDH3	chr16	89245824	+
5CDS-intron	ENST00000302516	ENST00000581171		TCGA	LD	LUAD	TCGA-44-7667-01A	SF3B3	chr16	70578436	+	CDH3	chr16	89245824	+
5CDS-intron	ENST00000302516	ENST00000569117		TCGA	LD	LUAD	TCGA-44-7667-01A	SF3B3	chr16	70578436	+	CDH3	chr16	89245824	+
5UTR-3CDS	ENST00000586448	ENST00000289119		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
5UTR-intron	ENST00000586448	ENST00000580981		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
5UTR-5UTR	ENST00000586448	ENST00000578270		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
5UTR-5UTR	ENST00000586448	ENST00000579875		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-3CDS	ENST00000255226	ENST00000289119		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-intron	ENST00000255226	ENST00000580981		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000255226	ENST00000578270		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000255226	ENST00000579875		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-3CDS	ENST00000589658	ENST00000289119		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-intron	ENST00000589658	ENST00000580981		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000589658	ENST00000578270		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000589658	ENST00000579875		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC14A2	chr18	42793156	+	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000565644	ENST00000359154		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-5UTR	ENST00000565644	ENST00000448661		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-5UTR	ENST00000565644	ENST00000569174		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-5UTR	ENST00000565644	ENST00000356003		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-intron	ENST00000565644	ENST00000544162		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-intron	ENST00000565644	ENST00000542271		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-intron	ENST00000565644	ENST00000568684		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000261622	ENST00000359154		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000261622	ENST00000448661		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000261622	ENST00000569174		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000261622	ENST00000356003		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-intron	ENST00000261622	ENST00000544162		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-intron	ENST00000261622	ENST00000542271		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
5CDS-intron	ENST00000261622	ENST00000568684		TCGA	LD	LUAD	TCGA-44-7667-01A	SLC7A5	chr16	87902491	-	WWP2	chr16	69820899	+
intron-3CDS	ENST00000532456	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
intron-3CDS	ENST00000532456	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
intron-5UTR	ENST00000532456	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
intron-intron	ENST00000532456	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000539648	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000539648	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000539648	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000539648	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000528499	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000528499	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000528499	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000528499	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000263574	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000263574	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000263574	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000263574	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000345598	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000345598	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000345598	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000345598	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000338167	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000338167	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000338167	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000338167	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000278756	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000278756	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000278756	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000278756	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000543137	ENST00000263672		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000543137	ENST00000530257		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-5UTR	ENST00000543137	ENST00000526361		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
5CDS-intron	ENST00000543137	ENST00000528265		TCGA	LD	LUAD	TCGA-44-7669-01A	APLP2	chr11	129997735	+	SPCS2	chr11	74676079	+
In-frame	ENST00000269141	ENST00000313654		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
In-frame	ENST00000269141	ENST00000399516		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
5CDS-intron	ENST00000269141	ENST00000269217		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
5CDS-intron	ENST00000269141	ENST00000587184		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
5CDS-intron	ENST00000269141	ENST00000588770		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
intron-3CDS	ENST00000399380	ENST00000313654		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
intron-3CDS	ENST00000399380	ENST00000399516		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
intron-intron	ENST00000399380	ENST00000269217		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
intron-intron	ENST00000399380	ENST00000587184		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
intron-intron	ENST00000399380	ENST00000588770		TCGA	LD	LUAD	TCGA-44-7669-01A	CDH2	chr18	25727637	-	LAMA3	chr18	21393021	+
5UTR-intron	ENST00000543086	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000543086	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000546231	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000546231	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000397203	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000397203	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000360905	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
5UTR-intron	ENST00000360905	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
intron-intron	ENST00000589028	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
intron-intron	ENST00000589028	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
intron-intron	ENST00000355446	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
intron-intron	ENST00000355446	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
intron-intron	ENST00000536573	ENST00000326765		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
intron-intron	ENST00000536573	ENST00000356591		TCGA	LD	LUAD	TCGA-44-7669-01A	ERC1	chr12	1100488	+	APOLD1	chr12	12965195	+
Frame-shit	ENST00000444631	ENST00000389462		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
Frame-shit	ENST00000444631	ENST00000309083		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000444631	ENST00000538057		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
In-frame	ENST00000336133	ENST00000389462		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
In-frame	ENST00000336133	ENST00000309083		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000336133	ENST00000538057		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
In-frame	ENST00000552080	ENST00000389462		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
In-frame	ENST00000552080	ENST00000309083		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
5CDS-3UTR	ENST00000552080	ENST00000538057		TCGA	LD	LUAD	TCGA-44-7669-01A	SARNP	chr12	56182859	-	PTMS	chr12	6878769	+
In-frame	ENST00000228284	ENST00000261401		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
In-frame	ENST00000228284	ENST00000541050		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000228284	ENST00000549384		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000228284	ENST00000421578		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000228284	ENST00000420959		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000228284	ENST00000549772		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
In-frame	ENST00000431469	ENST00000261401		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
In-frame	ENST00000431469	ENST00000541050		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000431469	ENST00000549384		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000431469	ENST00000421578		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000431469	ENST00000420959		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
5CDS-intron	ENST00000431469	ENST00000549772		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-3CDS	ENST00000552221	ENST00000261401		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-3CDS	ENST00000552221	ENST00000541050		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000552221	ENST00000549384		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000552221	ENST00000421578		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000552221	ENST00000420959		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000552221	ENST00000549772		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-3CDS	ENST00000546611	ENST00000261401		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-3CDS	ENST00000546611	ENST00000541050		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000546611	ENST00000549384		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000546611	ENST00000421578		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000546611	ENST00000420959		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
intron-intron	ENST00000546611	ENST00000549772		TCGA	LD	LUAD	TCGA-44-7669-01A	SART3	chr12	108929135	-	CORO1C	chr12	109042796	-
Frame-shit	ENST00000548411	ENST00000265734		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000548411	ENST00000424848		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
5CDS-intron	ENST00000548411	ENST00000491250		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000281474	ENST00000265734		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000281474	ENST00000424848		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
5CDS-intron	ENST00000281474	ENST00000491250		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000551848	ENST00000265734		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000551848	ENST00000424848		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
5CDS-intron	ENST00000551848	ENST00000491250		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000550207	ENST00000265734		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000550207	ENST00000424848		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
5CDS-intron	ENST00000550207	ENST00000491250		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000551086	ENST00000265734		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000551086	ENST00000424848		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
5CDS-intron	ENST00000551086	ENST00000491250		TCGA	LD	LUAD	TCGA-44-7670-01A	BICD1	chr12	32260478	+	CDK6	chr7	92247521	-
Frame-shit	ENST00000361570	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000361570	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000361570	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
5CDS-intron	ENST00000361570	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000304494	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000304494	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000304494	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000304494	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000579755	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000579755	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000579755	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
5CDS-intron	ENST00000579755	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000579122	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000579122	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000579122	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000579122	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000578845	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000578845	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000578845	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000578845	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000530628	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000530628	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000530628	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
5CDS-intron	ENST00000530628	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000498124	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000498124	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000498124	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000498124	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000498628	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000498628	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000498628	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000498628	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000494262	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000494262	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000494262	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000494262	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000446177	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000446177	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000446177	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000446177	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000479692	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000479692	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000479692	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000479692	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000497750	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000497750	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000497750	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000497750	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000470819	ENST00000380249		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000470819	ENST00000338382		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-3CDS	ENST00000470819	ENST00000605086		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
intron-intron	ENST00000470819	ENST00000604828		TCGA	LD	LUAD	TCGA-44-7670-01A	CDKN2A	chr9	21994138	-	FOCAD	chr9	20881870	+
Frame-shit	ENST00000302279	ENST00000262189		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
Frame-shit	ENST00000302279	ENST00000355193		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
5CDS-intron	ENST00000302279	ENST00000485655		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
5CDS-intron	ENST00000302279	ENST00000485241		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
Frame-shit	ENST00000342116	ENST00000262189		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
Frame-shit	ENST00000342116	ENST00000355193		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
5CDS-intron	ENST00000342116	ENST00000485655		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
5CDS-intron	ENST00000342116	ENST00000485241		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
intron-3CDS	ENST00000524546	ENST00000262189		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
intron-3CDS	ENST00000524546	ENST00000355193		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
intron-intron	ENST00000524546	ENST00000485655		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
intron-intron	ENST00000524546	ENST00000485241		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
Frame-shit	ENST00000529687	ENST00000262189		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
Frame-shit	ENST00000529687	ENST00000355193		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
5CDS-intron	ENST00000529687	ENST00000485655		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
5CDS-intron	ENST00000529687	ENST00000485241		TCGA	LD	LUAD	TCGA-44-7670-01A	FNTA	chr8	42938323	+	KMT2C	chr7	151970952	-
intron-3CDS	ENST00000456518	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000456518	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000456518	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000456518	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000456518	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397174	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397174	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397174	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397174	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000397174	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000402904	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000402904	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000402904	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000402904	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000402904	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361191	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361191	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361191	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361191	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000361191	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397171	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397171	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397171	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000397171	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000397171	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361705	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361705	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361705	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000361705	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000361705	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000326197	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000326197	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000326197	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000326197	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000326197	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000372595	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000372595	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000372595	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000372595	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000372595	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000337495	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000337495	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000337495	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000337495	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-intron	ENST00000337495	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372596	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372596	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372596	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372596	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-intron	ENST00000372596	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372597	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372597	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372597	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-3CDS	ENST00000372597	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
5UTR-intron	ENST00000372597	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000472037	ENST00000264414		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000472037	ENST00000344951		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000472037	ENST00000409096		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-3CDS	ENST00000472037	ENST00000409777		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
intron-intron	ENST00000472037	ENST00000432260		TCGA	LD	LUAD	TCGA-44-7670-01A	SCMH1	chr1	41707731	-	CUL3	chr2	225343062	-
In-frame	ENST00000331683	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000331683	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000331683	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
Frame-shit	ENST00000374309	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
Frame-shit	ENST00000374309	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000374309	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000432529	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000432529	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000432529	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000413312	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000413312	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000413312	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000272898	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000272898	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000272898	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000447990	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
In-frame	ENST00000447990	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5CDS-3UTR	ENST00000447990	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
3UTR-3CDS	ENST00000414961	ENST00000371073		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
3UTR-3CDS	ENST00000414961	ENST00000290039		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
3UTR-3UTR	ENST00000414961	ENST00000495994		TCGA	LD	LUAD	TCGA-44-7670-01A	SPAG16	chr2	214162081	+	CACHD1	chr1	65016277	+
5UTR-intron	ENST00000598155	ENST00000446828		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000424227		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000443863		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000535426		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000265026		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000448876		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000454237		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5UTR-intron	ENST00000598155	ENST00000438798		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000446828		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000424227		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000443863		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000535426		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000265026		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000448876		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000454237		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
5CDS-intron	ENST00000245934	ENST00000438798		TCGA	LD	LUAD	TCGA-44-7670-01A	SYMPK	chr19	46326014	-	MAP3K13	chr3	185155235	+
In-frame	ENST00000205557	ENST00000228740		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
In-frame	ENST00000205557	ENST00000552789		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
5CDS-intron	ENST00000205557	ENST00000413268		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
5CDS-intron	ENST00000205557	ENST00000548375		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-3CDS	ENST00000574094	ENST00000228740		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-3CDS	ENST00000574094	ENST00000552789		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-intron	ENST00000574094	ENST00000413268		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-intron	ENST00000574094	ENST00000548375		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-3CDS	ENST00000575728	ENST00000228740		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-3CDS	ENST00000575728	ENST00000552789		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-intron	ENST00000575728	ENST00000413268		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-intron	ENST00000575728	ENST00000548375		TCGA	LD	LUAD	TCGA-44-7672-01A	ABCC6	chr16	16276269	-	LTA4H	chr12	96397698	-
intron-3CDS	ENST00000399568	ENST00000347580		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399568	ENST00000379853		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399568	ENST00000265708		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399568	ENST00000521880		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-intron	ENST00000399568	ENST00000523181		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000542103	ENST00000347580		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000542103	ENST00000379853		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000542103	ENST00000265708		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000542103	ENST00000521880		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-intron	ENST00000542103	ENST00000523181		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399562	ENST00000347580		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399562	ENST00000379853		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399562	ENST00000265708		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000399562	ENST00000521880		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-intron	ENST00000399562	ENST00000523181		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000333059	ENST00000347580		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000333059	ENST00000379853		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000333059	ENST00000265708		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-3CDS	ENST00000333059	ENST00000521880		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
intron-intron	ENST00000333059	ENST00000523181		TCGA	LD	LUAD	TCGA-44-8117-01A	C22orf39	chr22	19393309	-	ADAM2	chr8	39627094	-
In-frame	ENST00000366523	ENST00000396062		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
In-frame	ENST00000366523	ENST00000216330		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
In-frame	ENST00000366522	ENST00000396062		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
In-frame	ENST00000366522	ENST00000216330		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
In-frame	ENST00000447569	ENST00000396062		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
In-frame	ENST00000447569	ENST00000216330		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
3UTR-3CDS	ENST00000487845	ENST00000396062		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
3UTR-3CDS	ENST00000487845	ENST00000216330		TCGA	LD	LUAD	TCGA-44-8117-01A	EFCAB2	chr1	245222760	+	FKBP3	chr14	45600003	-
Frame-shit	ENST00000300255	ENST00000441008		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000300255	ENST00000217333		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000300255	ENST00000400441		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
5CDS-intron	ENST00000300255	ENST00000466091		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000401402	ENST00000441008		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000401402	ENST00000217333		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000401402	ENST00000400441		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
5CDS-intron	ENST00000401402	ENST00000466091		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000382699	ENST00000441008		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000382699	ENST00000217333		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
Frame-shit	ENST00000382699	ENST00000400441		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
5CDS-intron	ENST00000382699	ENST00000466091		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
intron-3CDS	ENST00000485488	ENST00000441008		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
intron-3CDS	ENST00000485488	ENST00000217333		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
intron-3CDS	ENST00000485488	ENST00000400441		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
intron-intron	ENST00000485488	ENST00000466091		TCGA	LD	LUAD	TCGA-44-A479-01A	EVA1C	chr21	33785321	+	MROH8	chr20	35743740	-
In-frame	ENST00000343526	ENST00000450689		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000343526	ENST00000297222		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000343526	ENST00000444627		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000343526	ENST00000416314		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000343526	ENST00000490995		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
In-frame	ENST00000415680	ENST00000450689		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000415680	ENST00000297222		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000415680	ENST00000444627		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000415680	ENST00000416314		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000415680	ENST00000490995		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
intron-3CDS	ENST00000497516	ENST00000450689		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
intron-intron	ENST00000497516	ENST00000297222		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
intron-intron	ENST00000497516	ENST00000444627		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
intron-intron	ENST00000497516	ENST00000416314		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
intron-intron	ENST00000497516	ENST00000490995		TCGA	LD	LUAD	TCGA-44-A479-01A	TRIM24	chr7	138145657	+	KIAA1324L	chr7	86577238	-
5CDS-intron	ENST00000373913	ENST00000262865		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000373913	ENST00000489102		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000373913	ENST00000451435		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000401952	ENST00000262865		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000401952	ENST00000489102		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000401952	ENST00000451435		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000373907	ENST00000262865		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000373907	ENST00000489102		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000373907	ENST00000451435		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000339266	ENST00000262865		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000339266	ENST00000489102		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000339266	ENST00000451435		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
3UTR-intron	ENST00000475894	ENST00000262865		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
3UTR-intron	ENST00000475894	ENST00000489102		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
3UTR-intron	ENST00000475894	ENST00000451435		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000340491	ENST00000262865		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000340491	ENST00000489102		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000340491	ENST00000451435		TCGA	LD	LUAD	TCGA-44-A47B-01A	DLGAP4	chr20	35129014	+	BPI	chr20	36917118	+
5CDS-5UTR	ENST00000398022	ENST00000357410		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000398022	ENST00000327619		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000398022	ENST00000497428		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000398022	ENST00000317304		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000217315	ENST00000357410		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000217315	ENST00000327619		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000217315	ENST00000497428		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000217315	ENST00000317304		TCGA	LD	LUAD	TCGA-44-A47B-01A	TM9SF4	chr20	30747914	+	EYA2	chr20	45618640	+
Frame-shit	ENST00000378137	ENST00000318008		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
5CDS-intron	ENST00000378137	ENST00000433206		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
5CDS-intron	ENST00000378137	ENST00000435347		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
Frame-shit	ENST00000325718	ENST00000318008		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
5CDS-intron	ENST00000325718	ENST00000433206		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
5CDS-intron	ENST00000325718	ENST00000435347		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
intron-3CDS	ENST00000579179	ENST00000318008		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
intron-intron	ENST00000579179	ENST00000433206		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
intron-intron	ENST00000579179	ENST00000435347		TCGA	LD	LUAD	TCGA-44-A4SS-01A	MLLT6	chr17	36861994	+	LASP1	chr17	37046673	+
Frame-shit	ENST00000278742	ENST00000584601		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000406381		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000541774		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000445658		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000540147		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000584450		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000269571		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
In-frame	ENST00000278742	ENST00000578199		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
Frame-shit	ENST00000278742	ENST00000540042		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
5CDS-intron	ENST00000278742	ENST00000584888		TCGA	LD	LUAD	TCGA-44-A4SS-01A	ST14	chr11	130059791	+	ERBB2	chr17	37873573	+
5CDS-5UTR	ENST00000543307	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000543307	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000543307	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392219	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392219	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000541435	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000541435	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000590686	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000590686	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000342879	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000342879	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000588699	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000588699	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000423817	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000423817	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-5UTR	ENST00000392218	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
5CDS-intron	ENST00000392218	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000591716	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000591716	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000454903		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000406242		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000604404		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000435734		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000603181		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000604255		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000346446		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-5UTR	ENST00000392217	ENST00000344013		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000603449		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000406988		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000605550		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000604804		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000605552		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000535103		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000603524		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000604621		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
intron-intron	ENST00000392217	ENST00000605677		TCGA	LD	LUAD	TCGA-44-A4SU-01A	FXYD5	chr19	35648404	+	FXYD3	chr19	35607168	+
In-frame	ENST00000306279	ENST00000306384		TCGA	LD	LUAD	TCGA-49-4487-01A	ATOH8	chr2	85991305	+	VAMP5	chr2	85818848	+
3UTR-3CDS	ENST00000463422	ENST00000306384		TCGA	LD	LUAD	TCGA-49-4487-01A	ATOH8	chr2	85991305	+	VAMP5	chr2	85818848	+
5UTR-3CDS	ENST00000289431	ENST00000370989		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
5UTR-5UTR	ENST00000289431	ENST00000475052		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
5UTR-5UTR	ENST00000289431	ENST00000284562		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
intron-3CDS	ENST00000422556	ENST00000370989		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
intron-5UTR	ENST00000422556	ENST00000475052		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
intron-5UTR	ENST00000422556	ENST00000284562		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
5UTR-3CDS	ENST00000543716	ENST00000370989		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
5UTR-5UTR	ENST00000543716	ENST00000475052		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
5UTR-5UTR	ENST00000543716	ENST00000284562		TCGA	LD	LUAD	TCGA-49-4487-01A	SPATA2	chr20	48531917	-	GSTA5	chr6	52697788	-
3UTR-3CDS	ENST00000557932	ENST00000360957		TCGA	LD	LUAD	TCGA-49-4487-01A	WASH3P	chr15	102506426	+	PPP1R13L	chr19	45883486	-
3UTR-3CDS	ENST00000557932	ENST00000418234		TCGA	LD	LUAD	TCGA-49-4487-01A	WASH3P	chr15	102506426	+	PPP1R13L	chr19	45883486	-
Frame-shit	ENST00000246554	ENST00000301194		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000246554	ENST00000376530		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000246554	ENST00000391739		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000246554	ENST00000376531		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
5CDS-3UTR	ENST00000246554	ENST00000489425		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000592141	ENST00000301194		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000592141	ENST00000376530		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000592141	ENST00000391739		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000592141	ENST00000376531		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
5CDS-3UTR	ENST00000592141	ENST00000489425		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000392201	ENST00000301194		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000392201	ENST00000376530		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000392201	ENST00000391739		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
Frame-shit	ENST00000392201	ENST00000376531		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
5CDS-3UTR	ENST00000392201	ENST00000489425		TCGA	LD	LUAD	TCGA-49-4488-01A	COX6B1	chr19	36142251	+	TTYH1	chr19	54937850	+
intron-3CDS	ENST00000341701	ENST00000587331		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000341701	ENST00000405314		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
3UTR-3CDS	ENST00000607650	ENST00000587331		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
3UTR-3CDS	ENST00000607650	ENST00000405314		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000222270	ENST00000587331		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000222270	ENST00000405314		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000420124	ENST00000587331		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000420124	ENST00000405314		TCGA	LD	LUAD	TCGA-49-4488-01A	KMT2B	chr19	36228164	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000316157	ENST00000277517		TCGA	LD	LUAD	TCGA-49-4488-01A	LARP4B	chr10	882345	-	IDI2	chr10	1071799	-
intron-3CDS	ENST00000469487	ENST00000277517		TCGA	LD	LUAD	TCGA-49-4488-01A	LARP4B	chr10	882345	-	IDI2	chr10	1071799	-
5CDS-intron	ENST00000262809	ENST00000529490		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
5CDS-intron	ENST00000262809	ENST00000317040		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
5CDS-intron	ENST00000262809	ENST00000392702		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
5CDS-intron	ENST00000262809	ENST00000529939		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
5CDS-intron	ENST00000262809	ENST00000528515		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
5CDS-intron	ENST00000262809	ENST00000543795		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
intron-intron	ENST00000596124	ENST00000529490		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
intron-intron	ENST00000596124	ENST00000317040		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
intron-intron	ENST00000596124	ENST00000392702		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
intron-intron	ENST00000596124	ENST00000529939		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
intron-intron	ENST00000596124	ENST00000528515		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
intron-intron	ENST00000596124	ENST00000543795		TCGA	LD	LUAD	TCGA-49-4490-01A	ELL	chr19	18632731	-	MVB12A	chr19	17516886	+
Frame-shit	ENST00000330909	ENST00000353265		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000330909	ENST00000470488		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000402939	ENST00000353265		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000402939	ENST00000470488		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000483466	ENST00000353265		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000483466	ENST00000470488		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000497477	ENST00000353265		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000497477	ENST00000470488		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000470990	ENST00000353265		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000470990	ENST00000470488		TCGA	LD	LUAD	TCGA-49-4490-01A	MAGI1	chr3	65607647	-	PARD6G	chr18	77960815	-
In-frame	ENST00000360863	ENST00000430223		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
In-frame	ENST00000360863	ENST00000341166		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
5CDS-intron	ENST00000360863	ENST00000520545		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
Frame-shit	ENST00000523287	ENST00000430223		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
Frame-shit	ENST00000523287	ENST00000341166		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
5CDS-intron	ENST00000523287	ENST00000520545		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
In-frame	ENST00000523437	ENST00000430223		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
In-frame	ENST00000523437	ENST00000341166		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
5CDS-intron	ENST00000523437	ENST00000520545		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
intron-3CDS	ENST00000519421	ENST00000430223		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
intron-3CDS	ENST00000519421	ENST00000341166		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
intron-intron	ENST00000519421	ENST00000520545		TCGA	LD	LUAD	TCGA-49-4490-01A	RGS22	chr8	101059691	-	NIPAL2	chr8	99266315	-
intron-intron	ENST00000373053	ENST00000369878		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000373053	ENST00000433628		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000373053	ENST00000369875		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000373053	ENST00000475511		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000357157	ENST00000369878		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000357157	ENST00000433628		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000357157	ENST00000369875		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000357157	ENST00000475511		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000536019	ENST00000369878		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000536019	ENST00000433628		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000536019	ENST00000369875		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000536019	ENST00000475511		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000605416	ENST00000369878		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000605416	ENST00000433628		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000605416	ENST00000369875		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-intron	ENST00000605416	ENST00000475511		TCGA	LD	LUAD	TCGA-49-4494-01A	MCU	chr10	74475660	+	CNNM2	chr10	104687102	+
intron-3CDS	ENST00000449833	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000449833	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000449833	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000449833	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000449833	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000409161	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000409161	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000409161	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000409161	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000409161	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000423696	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000423696	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000423696	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000423696	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000423696	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000338508	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000338508	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000338508	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000338508	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000338508	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000409530	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000409530	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000409530	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000409530	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000409530	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000449116	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000449116	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000449116	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000449116	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000449116	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000357171	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000357171	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000357171	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000357171	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000357171	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000468619	ENST00000312175		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3CDS	ENST00000468619	ENST00000445560		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000468619	ENST00000524628		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000468619	ENST00000533166		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
intron-3UTR	ENST00000468619	ENST00000527348		TCGA	LD	LUAD	TCGA-49-4494-01A	SHANK2	chr11	70935743	-	BANF1	chr11	65771097	+
5UTR-3CDS	ENST00000373233	ENST00000373973		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000373233	ENST00000349339		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000373233	ENST00000538900		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000309279	ENST00000373973		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000309279	ENST00000349339		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000309279	ENST00000538900		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000373222	ENST00000373973		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000373222	ENST00000349339		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
5UTR-3CDS	ENST00000373222	ENST00000538900		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000480022	ENST00000373973		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000480022	ENST00000349339		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
intron-3CDS	ENST00000480022	ENST00000538900		TCGA	LD	LUAD	TCGA-49-4501-01A	CHD6	chr20	40246979	-	CNBD2	chr20	34560551	+
In-frame	ENST00000415912	ENST00000328619		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000415912	ENST00000468717		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
In-frame	ENST00000357071	ENST00000328619		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000357071	ENST00000468717		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
In-frame	ENST00000374893	ENST00000328619		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000374893	ENST00000468717		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
In-frame	ENST00000436918	ENST00000328619		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000436918	ENST00000468717		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
In-frame	ENST00000264205	ENST00000328619		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000264205	ENST00000468717		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5UTR-3CDS	ENST00000528294	ENST00000328619		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
5UTR-3UTR	ENST00000528294	ENST00000468717		TCGA	LD	LUAD	TCGA-49-4501-01A	ECE1	chr1	21571482	-	PCP4	chr21	41270401	+
In-frame	ENST00000343742	ENST00000299300		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
In-frame	ENST00000343742	ENST00000544368		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
In-frame	ENST00000343742	ENST00000543146		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
In-frame	ENST00000298910	ENST00000299300		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
In-frame	ENST00000298910	ENST00000544368		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
In-frame	ENST00000298910	ENST00000543146		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000481256	ENST00000299300		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000481256	ENST00000544368		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000481256	ENST00000543146		TCGA	LD	LUAD	TCGA-49-4501-01A	LRRK2	chr12	40681341	+	CCT2	chr12	69985839	+
5UTR-3CDS	ENST00000372990	ENST00000372862		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000372990	ENST00000372858		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000372990	ENST00000372857		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000372990	ENST00000372856		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-intron	ENST00000372990	ENST00000529216		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000289248	ENST00000372862		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000289248	ENST00000372858		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000289248	ENST00000372857		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000289248	ENST00000372856		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-intron	ENST00000289248	ENST00000529216		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000538156	ENST00000372862		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000538156	ENST00000372858		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000538156	ENST00000372857		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000538156	ENST00000372856		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-intron	ENST00000538156	ENST00000529216		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000372985	ENST00000372862		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000372985	ENST00000372858		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000372985	ENST00000372857		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-3CDS	ENST00000372985	ENST00000372856		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
intron-intron	ENST00000372985	ENST00000529216		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000540558	ENST00000372862		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000540558	ENST00000372858		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000540558	ENST00000372857		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-3CDS	ENST00000540558	ENST00000372856		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
5UTR-intron	ENST00000540558	ENST00000529216		TCGA	LD	LUAD	TCGA-49-4501-01A	RHBDL2	chr1	39407354	-	PABPC4	chr1	40030214	-
In-frame	ENST00000563675	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
In-frame	ENST00000563675	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
In-frame	ENST00000563675	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
In-frame	ENST00000563675	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
In-frame	ENST00000563675	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000541464	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000541464	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000541464	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000541464	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000541464	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000381414	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000381414	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000381414	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000381414	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000381414	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000396229	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000396229	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000396229	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000396229	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000396229	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000542583	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000542583	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000542583	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000542583	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000542583	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000219821	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000219821	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000219821	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000219821	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000219821	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000561503	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000561503	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000561503	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000561503	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000561503	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000564959	ENST00000355377		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000564959	ENST00000562034		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000564959	ENST00000562711		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000564959	ENST00000568433		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
intron-3CDS	ENST00000564959	ENST00000568115		TCGA	LD	LUAD	TCGA-49-4501-01A	TMC5	chr16	19441962	+	SYT17	chr16	19234367	+
5UTR-3CDS	ENST00000481847	ENST00000372518		TCGA	LD	LUAD	TCGA-49-4505-01A	WFDC3	chr20	44387031	-	NEURL2	chr20	44517512	-
intron-3CDS	ENST00000243938	ENST00000372518		TCGA	LD	LUAD	TCGA-49-4505-01A	WFDC3	chr20	44387031	-	NEURL2	chr20	44517512	-
intron-3CDS	ENST00000372632	ENST00000372518		TCGA	LD	LUAD	TCGA-49-4505-01A	WFDC3	chr20	44387031	-	NEURL2	chr20	44517512	-
intron-3CDS	ENST00000372630	ENST00000372518		TCGA	LD	LUAD	TCGA-49-4505-01A	WFDC3	chr20	44387031	-	NEURL2	chr20	44517512	-
5CDS-intron	ENST00000367164	ENST00000367160		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5CDS-intron	ENST00000367164	ENST00000367161		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5CDS-intron	ENST00000367164	ENST00000367162		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5CDS-intron	ENST00000264515	ENST00000367160		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5CDS-intron	ENST00000264515	ENST00000367161		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5CDS-intron	ENST00000264515	ENST00000367162		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5UTR-intron	ENST00000484379	ENST00000367160		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5UTR-intron	ENST00000484379	ENST00000367161		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
5UTR-intron	ENST00000484379	ENST00000367162		TCGA	LD	LUAD	TCGA-49-4506-01A	RBBP5	chr1	205083917	-	DSTYK	chr1	205119922	-
intron-intron	ENST00000323541	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000323541	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000323541	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000323541	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000323541	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000323541	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000454838	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000454838	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000454838	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000454838	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000454838	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000454838	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000449825	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000449825	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000449825	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000449825	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000449825	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000449825	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000323578	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000323578	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000323578	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000323578	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000323578	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000323578	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000429789	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000429789	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000429789	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000429789	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000429789	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000429789	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000336845	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000336845	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000336845	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000336845	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000336845	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000336845	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000528581	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000528581	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000528581	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000528581	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000528581	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000528581	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000436108	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000436108	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000436108	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000436108	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000436108	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-intron	ENST00000436108	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000526714	ENST00000470422		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000526714	ENST00000246043		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000526714	ENST00000377813		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000526714	ENST00000377807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000526714	ENST00000360807		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
intron-intron	ENST00000526714	ENST00000455029		TCGA	LD	LUAD	TCGA-49-4512-01A	CHID1	chr11	910775	-	RRBP1	chr20	17610606	-
5UTR-3CDS	ENST00000375114	ENST00000473997		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000375114	ENST00000346416		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000375114	ENST00000339269		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000375114	ENST00000357886		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-intron	ENST00000375114	ENST00000544843		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-intron	ENST00000375114	ENST00000477105		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000246194	ENST00000473997		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000246194	ENST00000346416		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000246194	ENST00000339269		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-3CDS	ENST00000246194	ENST00000357886		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-intron	ENST00000246194	ENST00000544843		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
5UTR-intron	ENST00000246194	ENST00000477105		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000493399	ENST00000473997		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000493399	ENST00000346416		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000493399	ENST00000339269		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
intron-3CDS	ENST00000493399	ENST00000357886		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
intron-intron	ENST00000493399	ENST00000544843		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
intron-intron	ENST00000493399	ENST00000477105		TCGA	LD	LUAD	TCGA-49-4512-01A	RALY	chr20	32619410	+	CDK5RAP1	chr20	31946929	-
In-frame	ENST00000347300	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000347300	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000347300	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000347300	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000296266	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000296266	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000296266	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000296266	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000507564	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000507564	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000507564	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000507564	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000431818	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000431818	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000431818	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000431818	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000504021	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000504021	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000504021	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000504021	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000349441	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000349441	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000349441	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000349441	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000348417	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000348417	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000348417	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000348417	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000440957	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000440957	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000440957	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
In-frame	ENST00000440957	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000513932	ENST00000383463		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000513932	ENST00000417226		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000513932	ENST00000502878		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000513932	ENST00000389735		TCGA	LD	LUAD	TCGA-49-4514-01A	IFT122	chr3	129207240	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000368323	ENST00000295688		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368323	ENST00000368259		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368323	ENST00000368261		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368323	ENST00000472765		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
5CDS-intron	ENST00000368323	ENST00000368256		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000539040	ENST00000295688		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000539040	ENST00000368259		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000539040	ENST00000368261		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000539040	ENST00000472765		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
5CDS-intron	ENST00000539040	ENST00000368256		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368322	ENST00000295688		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368322	ENST00000368259		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368322	ENST00000368261		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
Frame-shit	ENST00000368322	ENST00000472765		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
5CDS-intron	ENST00000368322	ENST00000368256		TCGA	LD	LUAD	TCGA-49-4514-01A	RIT1	chr1	155880241	-	CCT3	chr1	156282012	-
intron-3CDS	ENST00000469100	ENST00000262915		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372375		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000351035		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372374		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000353126		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000545417		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000330208		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000335430		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372377		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000361392		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000361400		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000347631		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000361812		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372362		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000531451		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372366		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372365		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372368		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000332628		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372372		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000531816		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000528371		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372369		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000531993		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000361746		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000533933		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3CDS	ENST00000469100	ENST00000372367		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
intron-3UTR	ENST00000469100	ENST00000461375		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000262915		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372375		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000351035		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372374		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000353126		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000545417		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000330208		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000335430		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372377		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000361392		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000361400		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000347631		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000361812		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372362		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000531451		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372366		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372365		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372368		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000332628		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372372		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000531816		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000528371		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372369		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000531993		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000361746		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000533933		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
Frame-shit	ENST00000373477	ENST00000372367		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
5CDS-3UTR	ENST00000373477	ENST00000461375		TCGA	LD	LUAD	TCGA-49-4514-01A	YARS	chr1	33272083	-	ST3GAL3	chr1	44280563	+
In-frame	ENST00000419735	ENST00000480514		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000419735	ENST00000485614		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000419735	ENST00000486180		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
5CDS-5UTR	ENST00000419735	ENST00000490493		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
5CDS-intron	ENST00000419735	ENST00000460135		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000477775	ENST00000480514		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000477775	ENST00000485614		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000477775	ENST00000486180		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-5UTR	ENST00000477775	ENST00000490493		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-intron	ENST00000477775	ENST00000460135		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000318724	ENST00000480514		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000318724	ENST00000485614		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000318724	ENST00000486180		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
5CDS-5UTR	ENST00000318724	ENST00000490493		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
5CDS-intron	ENST00000318724	ENST00000460135		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000478915	ENST00000480514		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000478915	ENST00000485614		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
In-frame	ENST00000478915	ENST00000486180		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
5CDS-5UTR	ENST00000478915	ENST00000490493		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
5CDS-intron	ENST00000478915	ENST00000460135		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000388807	ENST00000480514		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000388807	ENST00000485614		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000388807	ENST00000486180		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-5UTR	ENST00000388807	ENST00000490493		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-intron	ENST00000388807	ENST00000460135		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000472910	ENST00000480514		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000472910	ENST00000485614		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000472910	ENST00000486180		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-5UTR	ENST00000472910	ENST00000490493		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
intron-intron	ENST00000472910	ENST00000460135		TCGA	LD	LUAD	TCGA-49-6743-01A	ATXN7L1	chr7	105429050	-	EFCAB10	chr7	105210018	-
Frame-shit	ENST00000371440	ENST00000216862		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
Frame-shit	ENST00000371440	ENST00000395955		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
5CDS-intron	ENST00000371440	ENST00000460643		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
5CDS-intron	ENST00000371440	ENST00000395954		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
Frame-shit	ENST00000371435	ENST00000216862		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
Frame-shit	ENST00000371435	ENST00000395955		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
5CDS-intron	ENST00000371435	ENST00000460643		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
5CDS-intron	ENST00000371435	ENST00000395954		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
Frame-shit	ENST00000395961	ENST00000216862		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
Frame-shit	ENST00000395961	ENST00000395955		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
5CDS-intron	ENST00000395961	ENST00000460643		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
5CDS-intron	ENST00000395961	ENST00000395954		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-3CDS	ENST00000434986	ENST00000216862		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-3CDS	ENST00000434986	ENST00000395955		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-intron	ENST00000434986	ENST00000460643		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-intron	ENST00000434986	ENST00000395954		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-3CDS	ENST00000411563	ENST00000216862		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-3CDS	ENST00000411563	ENST00000395955		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-intron	ENST00000411563	ENST00000460643		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
intron-intron	ENST00000411563	ENST00000395954		TCGA	LD	LUAD	TCGA-49-6743-01A	BCAS1	chr20	52674624	-	CYP24A1	chr20	52788209	-
Frame-shit	ENST00000040877	ENST00000366607		TCGA	LD	LUAD	TCGA-49-6743-01A	TARBP1	chr1	234596007	-	TOMM20	chr1	235277225	-
5CDS-5UTR	ENST00000040877	ENST00000467767		TCGA	LD	LUAD	TCGA-49-6743-01A	TARBP1	chr1	234596007	-	TOMM20	chr1	235277225	-
intron-3CDS	ENST00000483404	ENST00000366607		TCGA	LD	LUAD	TCGA-49-6743-01A	TARBP1	chr1	234596007	-	TOMM20	chr1	235277225	-
intron-5UTR	ENST00000483404	ENST00000467767		TCGA	LD	LUAD	TCGA-49-6743-01A	TARBP1	chr1	234596007	-	TOMM20	chr1	235277225	-
5UTR-5UTR	ENST00000261182	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000393263	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000431879	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000547773	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000544816	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000542344	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000535020	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000549596	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
intron-5UTR	ENST00000547993	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000552342	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000548044	ENST00000256958		TCGA	LD	LUAD	TCGA-49-AAQV-01A	NAP1L1	chr12	76478347	-	SLCO1B1	chr12	21294448	+
Frame-shit	ENST00000343550	ENST00000221455		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000343550	ENST00000391953		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000343550	ENST00000544944		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
Frame-shit	ENST00000222305	ENST00000221455		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000222305	ENST00000391953		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000222305	ENST00000544944		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
Frame-shit	ENST00000595068	ENST00000221455		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000595068	ENST00000391953		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000595068	ENST00000544944		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
Frame-shit	ENST00000379134	ENST00000221455		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000379134	ENST00000391953		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000379134	ENST00000544944		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
Frame-shit	ENST00000594064	ENST00000221455		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000594064	ENST00000391953		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
5CDS-intron	ENST00000594064	ENST00000544944		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
3UTR-3CDS	ENST00000600341	ENST00000221455		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
3UTR-intron	ENST00000600341	ENST00000391953		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
3UTR-intron	ENST00000600341	ENST00000544944		TCGA	LD	LUAD	TCGA-49-AAQV-01A	USF2	chr19	35762044	+	CLASRP	chr19	45556356	+
Frame-shit	ENST00000361368	ENST00000249270		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
Frame-shit	ENST00000361368	ENST00000379263		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
Frame-shit	ENST00000361368	ENST00000412522		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
Frame-shit	ENST00000361125	ENST00000249270		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
Frame-shit	ENST00000361125	ENST00000379263		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
Frame-shit	ENST00000361125	ENST00000412522		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
intron-3CDS	ENST00000480055	ENST00000249270		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
intron-3CDS	ENST00000480055	ENST00000379263		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
intron-3CDS	ENST00000480055	ENST00000412522		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98741349	-	DNAJC2	chr7	102982401	-
intron-3CDS	ENST00000361368	ENST00000356767		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000361368	ENST00000393735		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000361368	ENST00000339444		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000393730		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000306312		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000432958		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000354356		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000393729		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000393727		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361368	ENST00000393723		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000361125	ENST00000356767		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000361125	ENST00000393735		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000361125	ENST00000339444		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000393730		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000306312		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000432958		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000354356		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000393729		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000393727		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000361125	ENST00000393723		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000480055	ENST00000356767		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000480055	ENST00000393735		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-3CDS	ENST00000480055	ENST00000339444		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393730		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000306312		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000432958		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000354356		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393729		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393727		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
intron-intron	ENST00000480055	ENST00000393723		TCGA	LD	LUAD	TCGA-49-AAR0-01A	SMURF1	chr7	98718769	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000348165	ENST00000297537		TCGA	LD	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150847108	-
5CDS-5UTR	ENST00000348165	ENST00000475831		TCGA	LD	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150847108	-
intron-intron	ENST00000389103	ENST00000297537		TCGA	LD	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150847108	-
intron-5UTR	ENST00000389103	ENST00000475831		TCGA	LD	LUAD	TCGA-49-AAR0-01A	UBE3C	chr7	157000629	+	GBX1	chr7	150847108	-
5CDS-5UTR	ENST00000374759	ENST00000524622		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000374759	ENST00000532804		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000374759	ENST00000449076		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000374759	ENST00000316577		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000374759	ENST00000531122		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-intron	ENST00000374759	ENST00000524959		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000288439	ENST00000524622		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000288439	ENST00000532804		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000288439	ENST00000449076		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000288439	ENST00000316577		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000288439	ENST00000531122		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-intron	ENST00000288439	ENST00000524959		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
intron-5UTR	ENST00000546352	ENST00000524622		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
intron-5UTR	ENST00000546352	ENST00000532804		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
intron-5UTR	ENST00000546352	ENST00000449076		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
intron-5UTR	ENST00000546352	ENST00000316577		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
intron-5UTR	ENST00000546352	ENST00000531122		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
intron-intron	ENST00000546352	ENST00000524959		TCGA	LD	LUAD	TCGA-49-AAR9-01A	SLC38A10	chr17	79268623	-	TESPA1	chr12	55359935	-
5CDS-5UTR	ENST00000376062	ENST00000289825		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000376062	ENST00000375083		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000376062	ENST00000375079		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000376062	ENST00000289815		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-intron	ENST00000376062	ENST00000525343		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
intron-5UTR	ENST00000376055	ENST00000289825		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
intron-5UTR	ENST00000376055	ENST00000375083		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
intron-5UTR	ENST00000376055	ENST00000375079		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
intron-5UTR	ENST00000376055	ENST00000289815		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
intron-intron	ENST00000376055	ENST00000525343		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000307677	ENST00000289825		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000307677	ENST00000375083		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000307677	ENST00000375079		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000307677	ENST00000289815		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-intron	ENST00000307677	ENST00000525343		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000420653	ENST00000289825		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000420653	ENST00000375083		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000420653	ENST00000375079		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-5UTR	ENST00000420653	ENST00000289815		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
5CDS-intron	ENST00000420653	ENST00000525343		TCGA	LD	LUAD	TCGA-49-AARE-01A	BCL2L1	chr20	30309458	-	VWA5B1	chr1	20637069	+
In-frame	ENST00000171111	ENST00000357410		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
In-frame	ENST00000171111	ENST00000327619		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
5CDS-intron	ENST00000171111	ENST00000497428		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
5CDS-intron	ENST00000171111	ENST00000317304		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
Frame-shit	ENST00000393623	ENST00000357410		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
Frame-shit	ENST00000393623	ENST00000327619		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
5CDS-intron	ENST00000393623	ENST00000497428		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
5CDS-intron	ENST00000393623	ENST00000317304		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
intron-3CDS	ENST00000588024	ENST00000357410		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
intron-3CDS	ENST00000588024	ENST00000327619		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
intron-intron	ENST00000588024	ENST00000497428		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
intron-intron	ENST00000588024	ENST00000317304		TCGA	LD	LUAD	TCGA-49-AARE-01A	KEAP1	chr19	10599868	-	EYA2	chr20	45797787	+
Frame-shit	ENST00000379666	ENST00000379717		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
Frame-shit	ENST00000379666	ENST00000355467		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000379666	ENST00000494548		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000379666	ENST00000556601		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000379666	ENST00000416005		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000379666	ENST00000413371		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
Frame-shit	ENST00000296102	ENST00000379717		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
Frame-shit	ENST00000296102	ENST00000355467		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000296102	ENST00000494548		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000296102	ENST00000556601		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000296102	ENST00000416005		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
5CDS-intron	ENST00000296102	ENST00000413371		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
intron-3CDS	ENST00000483992	ENST00000379717		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
intron-3CDS	ENST00000483992	ENST00000355467		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
intron-intron	ENST00000483992	ENST00000494548		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
intron-intron	ENST00000483992	ENST00000556601		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
intron-intron	ENST00000483992	ENST00000416005		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
intron-intron	ENST00000483992	ENST00000413371		TCGA	LD	LUAD	TCGA-49-AARE-01A	MRPL33	chr2	27994666	+	ZNF512	chr2	27830712	+
Frame-shit	ENST00000341724	ENST00000585892		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000341724	ENST00000314646		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000341724	ENST00000359692		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000341724	ENST00000389253		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000341724	ENST00000355667		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000341724	ENST00000408974		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000341724	ENST00000591819		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000372004	ENST00000585892		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000372004	ENST00000314646		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000372004	ENST00000359692		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000372004	ENST00000389253		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000372004	ENST00000355667		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000372004	ENST00000408974		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000372004	ENST00000591819		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371998	ENST00000585892		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371998	ENST00000314646		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371998	ENST00000359692		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371998	ENST00000389253		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371998	ENST00000355667		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371998	ENST00000408974		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000371998	ENST00000591819		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371997	ENST00000585892		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371997	ENST00000314646		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371997	ENST00000359692		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371997	ENST00000389253		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371997	ENST00000355667		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
Frame-shit	ENST00000371997	ENST00000408974		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000371997	ENST00000591819		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-3CDS	ENST00000497292	ENST00000585892		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-3CDS	ENST00000497292	ENST00000314646		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-3CDS	ENST00000497292	ENST00000359692		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-3CDS	ENST00000497292	ENST00000389253		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-3CDS	ENST00000497292	ENST00000355667		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-3CDS	ENST00000497292	ENST00000408974		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
3UTR-intron	ENST00000497292	ENST00000591819		TCGA	LD	LUAD	TCGA-49-AARE-01A	NCOA3	chr20	46256767	+	DNM2	chr19	10939712	+
In-frame	ENST00000413953	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000413953	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000413953	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000413953	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000413953	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000413953	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000413953	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000413953	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000413953	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000347140	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000347140	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000347140	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000347140	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000347140	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000347140	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000347140	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000347140	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000347140	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000358907	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000358907	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000358907	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000358907	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000358907	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000358907	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000358907	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000358907	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000358907	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000402412	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000402412	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000402412	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000402412	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000402412	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000402412	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000402412	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000402412	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000402412	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000441731	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000441731	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000441731	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
Frame-shit	ENST00000441731	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000441731	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000441731	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000441731	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000441731	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000441731	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000403821	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000403821	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000403821	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
In-frame	ENST00000403821	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000403821	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000403821	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000403821	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000403821	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
5CDS-intron	ENST00000403821	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000546843	ENST00000552285		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000546843	ENST00000315970		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000546843	ENST00000439210		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-3CDS	ENST00000546843	ENST00000389146		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-intron	ENST00000546843	ENST00000413095		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-intron	ENST00000546843	ENST00000551035		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-intron	ENST00000546843	ENST00000435406		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-intron	ENST00000546843	ENST00000257966		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-intron	ENST00000546843	ENST00000389142		TCGA	LD	LUAD	TCGA-49-AARO-01A	R3HDM2	chr12	57649773	-	OS9	chr12	58109543	+
intron-3UTR	ENST00000389221	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000389221	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000389221	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000389221	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000389221	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000389221	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000389221	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000508903	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000508903	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000508903	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000508903	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000508903	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000508903	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000508903	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000397462	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000397462	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000397462	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397462	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397462	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397462	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397462	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000391893	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000391893	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000391893	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000391893	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000391893	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000391893	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000391893	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000403703	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000403703	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000403703	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000403703	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000403703	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000403703	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000403703	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000248104	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000248104	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000248104	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000248104	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000248104	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000248104	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000248104	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000397464	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000397464	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000397464	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397464	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397464	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397464	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000397464	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000402641	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000402641	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000402641	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000402641	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000402641	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000402641	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000402641	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000301712	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000301712	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000301712	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000301712	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000301712	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000301712	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000301712	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000503648	ENST00000396368		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000503648	ENST00000540441		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-3UTR	ENST00000503648	ENST00000344181		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000503648	ENST00000551742		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000503648	ENST00000602337		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000503648	ENST00000548025		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
intron-intron	ENST00000503648	ENST00000547936		TCGA	LD	LUAD	TCGA-49-AARQ-01A	UNKL	chr16	1416019	-	KIAA0430	chr16	15689086	-
5CDS-5UTR	ENST00000280886	ENST00000447903		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
5CDS-5UTR	ENST00000280886	ENST00000309812		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
5CDS-intron	ENST00000280886	ENST00000332708		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
5CDS-5UTR	ENST00000280886	ENST00000413237		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-5UTR	ENST00000381496	ENST00000447903		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-5UTR	ENST00000381496	ENST00000309812		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-intron	ENST00000381496	ENST00000332708		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-5UTR	ENST00000381496	ENST00000413237		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-5UTR	ENST00000540204	ENST00000447903		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-5UTR	ENST00000540204	ENST00000309812		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-intron	ENST00000540204	ENST00000332708		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
intron-5UTR	ENST00000540204	ENST00000413237		TCGA	LD	LUAD	TCGA-4B-A93V-01A	DIP2C	chr10	735434	-	TUBB8	chr10	94852	-
5CDS-3UTR	ENST00000381344	ENST00000470862		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5CDS-5UTR	ENST00000381344	ENST00000605149		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5CDS-5UTR	ENST00000381344	ENST00000439082		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5CDS-intron	ENST00000381344	ENST00000380554		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5UTR-3UTR	ENST00000491735	ENST00000470862		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5UTR-5UTR	ENST00000491735	ENST00000605149		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5UTR-5UTR	ENST00000491735	ENST00000439082		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
5UTR-intron	ENST00000491735	ENST00000380554		TCGA	LD	LUAD	TCGA-4B-A93V-01A	IDI1	chr10	1094804	-	AKR1C3	chr10	5120092	+
In-frame	ENST00000409792	ENST00000295588		TCGA	LD	LUAD	TCGA-50-5044-01A	SETD2	chr3	47139445	-	POGLUT1	chr3	119207776	+
intron-3CDS	ENST00000492397	ENST00000295588		TCGA	LD	LUAD	TCGA-50-5044-01A	SETD2	chr3	47139445	-	POGLUT1	chr3	119207776	+
In-frame	ENST00000332797	ENST00000409790		TCGA	LD	LUAD	TCGA-50-5049-01A	CCDC28A	chr6	139101122	+	CLEC16A	chr16	11260245	+
5CDS-intron	ENST00000332797	ENST00000409552		TCGA	LD	LUAD	TCGA-50-5049-01A	CCDC28A	chr6	139101122	+	CLEC16A	chr16	11260245	+
5CDS-intron	ENST00000332797	ENST00000465491		TCGA	LD	LUAD	TCGA-50-5049-01A	CCDC28A	chr6	139101122	+	CLEC16A	chr16	11260245	+
5CDS-5UTR	ENST00000332797	ENST00000381822		TCGA	LD	LUAD	TCGA-50-5049-01A	CCDC28A	chr6	139101122	+	CLEC16A	chr16	11260245	+
Frame-shit	ENST00000259371	ENST00000361069		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
5CDS-intron	ENST00000259371	ENST00000480883		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
Frame-shit	ENST00000408936	ENST00000361069		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
5CDS-intron	ENST00000408936	ENST00000480883		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
Frame-shit	ENST00000309989	ENST00000361069		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
5CDS-intron	ENST00000309989	ENST00000480883		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
intron-3CDS	ENST00000487716	ENST00000361069		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
intron-intron	ENST00000487716	ENST00000480883		TCGA	LD	LUAD	TCGA-50-5049-01A	DAB2IP	chr9	124529009	+	LAMC3	chr9	133943465	+
5UTR-5UTR	ENST00000359543	ENST00000573319		TCGA	LD	LUAD	TCGA-50-5049-01A	EMP2	chr16	10674406	-	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000566033	ENST00000573319		TCGA	LD	LUAD	TCGA-50-5049-01A	EMP2	chr16	10674406	-	BCAR4	chr16	11914154	-
intron-5UTR	ENST00000536829	ENST00000573319		TCGA	LD	LUAD	TCGA-50-5049-01A	EMP2	chr16	10674406	-	BCAR4	chr16	11914154	-
5CDS-intron	ENST00000339976	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
5CDS-intron	ENST00000004980	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
5CDS-intron	ENST00000448372	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
5CDS-intron	ENST00000551330	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
5CDS-intron	ENST00000549518	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
5CDS-intron	ENST00000549595	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
5UTR-intron	ENST00000547886	ENST00000551894		TCGA	LD	LUAD	TCGA-50-5051-01A	SENP1	chr12	48490126	-	C12orf80	chr12	52606386	-
In-frame	ENST00000359626	ENST00000543727		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
In-frame	ENST00000359626	ENST00000550559		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
In-frame	ENST00000359626	ENST00000548851		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
In-frame	ENST00000359626	ENST00000454289		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
In-frame	ENST00000359626	ENST00000540550		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
In-frame	ENST00000359626	ENST00000323833		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
5CDS-5UTR	ENST00000359626	ENST00000350762		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
5CDS-3UTR	ENST00000359626	ENST00000497617		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3CDS	ENST00000491969	ENST00000543727		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3CDS	ENST00000491969	ENST00000550559		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3CDS	ENST00000491969	ENST00000548851		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3CDS	ENST00000491969	ENST00000454289		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3CDS	ENST00000491969	ENST00000540550		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3CDS	ENST00000491969	ENST00000323833		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-5UTR	ENST00000491969	ENST00000350762		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
intron-3UTR	ENST00000491969	ENST00000497617		TCGA	LD	LUAD	TCGA-50-5055-01A	TYW1	chr7	66463941	+	TSFM	chr12	58176893	+
5UTR-3CDS	ENST00000397397	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397397	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397397	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397397	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000397397	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397411	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397411	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397411	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000397411	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000397411	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397396	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397396	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397396	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397396	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000397396	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397408	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397408	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397408	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397408	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000397408	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397406	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397406	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397406	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397406	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000397406	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409543	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409543	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409543	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409543	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000409543	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000525201	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000525201	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000525201	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000525201	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000525201	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397404	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397404	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397404	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000397404	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000397404	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000346501	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000346501	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000346501	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-3CDS	ENST00000346501	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
5UTR-intron	ENST00000346501	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409531	ENST00000318562		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409531	ENST00000533256		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409531	ENST00000530636		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000409531	ENST00000526198		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000409531	ENST00000534449		TCGA	LD	LUAD	TCGA-50-5066-01A	TSPAN4	chr11	847300	+	EPS8L2	chr11	720062	+
Frame-shit	ENST00000566442	ENST00000249647		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000566442	ENST00000566141		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000566442	ENST00000564153		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000566442	ENST00000349777		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000566442	ENST00000567094		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000566442	ENST00000397138		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
Frame-shit	ENST00000318010	ENST00000249647		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000318010	ENST00000566141		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000318010	ENST00000564153		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000318010	ENST00000349777		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000318010	ENST00000567094		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
5CDS-intron	ENST00000318010	ENST00000397138		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
intron-3CDS	ENST00000440615	ENST00000249647		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
intron-intron	ENST00000440615	ENST00000566141		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
intron-intron	ENST00000440615	ENST00000564153		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
intron-intron	ENST00000440615	ENST00000349777		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
intron-intron	ENST00000440615	ENST00000567094		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
intron-intron	ENST00000440615	ENST00000397138		TCGA	LD	LUAD	TCGA-50-5930-01A	GANC	chr15	42589854	+	SNAP23	chr15	42820460	+
In-frame	ENST00000261308	ENST00000380985		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
In-frame	ENST00000261308	ENST00000502464		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
5CDS-intron	ENST00000261308	ENST00000515595		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
In-frame	ENST00000535264	ENST00000380985		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
In-frame	ENST00000535264	ENST00000502464		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
5CDS-intron	ENST00000535264	ENST00000515595		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
In-frame	ENST00000538977	ENST00000380985		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
In-frame	ENST00000538977	ENST00000502464		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
5CDS-intron	ENST00000538977	ENST00000515595		TCGA	LD	LUAD	TCGA-50-5930-01A	PPWD1	chr5	64875440	+	NLN	chr5	65076006	+
5CDS-5UTR	ENST00000227471	ENST00000333139		TCGA	LD	LUAD	TCGA-50-5930-01A	UNC93B1	chr11	67770492	-	C11orf72	chr11	67373482	-
5CDS-intron	ENST00000227471	ENST00000446232		TCGA	LD	LUAD	TCGA-50-5930-01A	UNC93B1	chr11	67770492	-	C11orf72	chr11	67373482	-
5UTR-5UTR	ENST00000530331	ENST00000333139		TCGA	LD	LUAD	TCGA-50-5930-01A	UNC93B1	chr11	67770492	-	C11orf72	chr11	67373482	-
5UTR-intron	ENST00000530331	ENST00000446232		TCGA	LD	LUAD	TCGA-50-5930-01A	UNC93B1	chr11	67770492	-	C11orf72	chr11	67373482	-
5UTR-3CDS	ENST00000301998	ENST00000264170		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
5UTR-intron	ENST00000301998	ENST00000375773		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
5UTR-intron	ENST00000301998	ENST00000409512		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
5UTR-intron	ENST00000301998	ENST00000410015		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
intron-3CDS	ENST00000405767	ENST00000264170		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
intron-intron	ENST00000405767	ENST00000375773		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
intron-intron	ENST00000405767	ENST00000409512		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
intron-intron	ENST00000405767	ENST00000410015		TCGA	LD	LUAD	TCGA-50-5931-01A	B3GNT2	chr2	62423490	+	KYNU	chr2	143797997	+
Frame-shit	ENST00000400967	ENST00000367006		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000400967	ENST00000452621		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000400967	ENST00000419091		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
5CDS-5UTR	ENST00000400967	ENST00000367005		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
5CDS-intron	ENST00000400967	ENST00000526255		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000235453	ENST00000367006		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000235453	ENST00000452621		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000235453	ENST00000419091		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
5CDS-5UTR	ENST00000235453	ENST00000367005		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
5CDS-intron	ENST00000235453	ENST00000526255		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000367396	ENST00000367006		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000367396	ENST00000452621		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
Frame-shit	ENST00000367396	ENST00000419091		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
5CDS-5UTR	ENST00000367396	ENST00000367005		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
5CDS-intron	ENST00000367396	ENST00000526255		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
intron-3CDS	ENST00000477581	ENST00000367006		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
intron-3CDS	ENST00000477581	ENST00000452621		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
intron-3CDS	ENST00000477581	ENST00000419091		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
intron-5UTR	ENST00000477581	ENST00000367005		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
intron-intron	ENST00000477581	ENST00000526255		TCGA	LD	LUAD	TCGA-50-5932-01A	DENND1B	chr1	197684161	-	RCOR3	chr1	211433450	+
intron-intron	ENST00000357103	ENST00000396037		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000357103	ENST00000539510		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000357103	ENST00000536558		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000357103	ENST00000404299		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000357103	ENST00000381424		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000544470	ENST00000396037		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000544470	ENST00000539510		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000544470	ENST00000536558		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000544470	ENST00000404299		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-intron	ENST00000544470	ENST00000381424		TCGA	LD	LUAD	TCGA-50-5935-01A	ADIPOR2	chr12	1800379	+	ST8SIA1	chr12	22223559	-
intron-5UTR	ENST00000010404	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000010404	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000010404	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000010404	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000010404	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000010404	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000396210	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000396210	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000396210	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000396210	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000396210	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-intron	ENST00000396210	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000535309	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000535309	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000535309	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000535309	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000535309	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5UTR-intron	ENST00000535309	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000540056	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000540056	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000540056	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000540056	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000540056	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000540056	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396209	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396209	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396209	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396209	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396209	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000396209	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396207	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396207	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396207	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396207	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000396207	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000396207	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000359720	ENST00000307378		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000359720	ENST00000537524		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000359720	ENST00000473830		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000359720	ENST00000452078		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000359720	ENST00000458504		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000359720	ENST00000390670		TCGA	LD	LUAD	TCGA-50-5935-01A	MGST1	chr12	16500644	+	SLCO1A2	chr12	21487643	-
5CDS-5UTR	ENST00000263102	ENST00000395347		TCGA	LD	LUAD	TCGA-50-5936-01A	CCDC6	chr10	61554231	-	SLC16A9	chr10	61444085	-
5CDS-5UTR	ENST00000263102	ENST00000395348		TCGA	LD	LUAD	TCGA-50-5936-01A	CCDC6	chr10	61554231	-	SLC16A9	chr10	61444085	-
5CDS-5UTR	ENST00000263102	ENST00000490066		TCGA	LD	LUAD	TCGA-50-5936-01A	CCDC6	chr10	61554231	-	SLC16A9	chr10	61444085	-
5UTR-3CDS	ENST00000434074	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000434074	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000434074	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000312040	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000312040	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000312040	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000451945	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000451945	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000451945	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000529655	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000529655	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000529655	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000530500	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000530500	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000530500	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000526508	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000526508	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000526508	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000524625	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000524625	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000524625	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000359513	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000359513	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000359513	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000528494	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000528494	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5UTR-3CDS	ENST00000528494	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
intron-3CDS	ENST00000526485	ENST00000350638		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
intron-3CDS	ENST00000526485	ENST00000379163		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
intron-3CDS	ENST00000526485	ENST00000395934		TCGA	LD	LUAD	TCGA-50-5941-01A	ATG13	chr11	46639440	+	ELP4	chr11	31804941	+
5CDS-intron	ENST00000322088	ENST00000221930		TCGA	LD	LUAD	TCGA-50-5941-01A	PPP2R1A	chr19	52709316	+	TGFB1	chr19	41808625	-
intron-intron	ENST00000444322	ENST00000221930		TCGA	LD	LUAD	TCGA-50-5941-01A	PPP2R1A	chr19	52709316	+	TGFB1	chr19	41808625	-
intron-intron	ENST00000477989	ENST00000221930		TCGA	LD	LUAD	TCGA-50-5941-01A	PPP2R1A	chr19	52709316	+	TGFB1	chr19	41808625	-
5UTR-intron	ENST00000462990	ENST00000221930		TCGA	LD	LUAD	TCGA-50-5941-01A	PPP2R1A	chr19	52709316	+	TGFB1	chr19	41808625	-
3UTR-intron	ENST00000473455	ENST00000221930		TCGA	LD	LUAD	TCGA-50-5941-01A	PPP2R1A	chr19	52709316	+	TGFB1	chr19	41808625	-
5CDS-5UTR	ENST00000397517	ENST00000520686		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000521988		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000537541		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000518748		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000523580		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000520430		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000517858		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-intron	ENST00000397517	ENST00000517540		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000378861		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000524037		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000521617		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000519069		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000524107		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000397517	ENST00000519969		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000520686		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000521988		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000537541		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000518748		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000523580		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000520430		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000517858		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-intron	ENST00000539966	ENST00000517540		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000378861		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000524037		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000521617		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000519069		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000524107		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000539966	ENST00000519969		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000520686		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000521988		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000537541		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000518748		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000523580		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000520430		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000517858		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-intron	ENST00000481288	ENST00000517540		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000378861		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000524037		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000521617		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000519069		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000524107		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000481288	ENST00000519969		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000520686		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000521988		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000537541		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000518748		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000523580		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000520430		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000517858		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-intron	ENST00000376547	ENST00000517540		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000378861		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000524037		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000521617		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000519069		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000524107		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000376547	ENST00000519969		TCGA	LD	LUAD	TCGA-50-5941-01A	STK24	chr13	99228999	-	TRIQK	chr8	93929238	-
Frame-shit	ENST00000261483	ENST00000378785		TCGA	LD	LUAD	TCGA-50-5944-01A	MAN2A1	chr5	109125228	+	ATAD3C	chr1	1403764	+
intron-3CDS	ENST00000505313	ENST00000378785		TCGA	LD	LUAD	TCGA-50-5944-01A	MAN2A1	chr5	109125228	+	ATAD3C	chr1	1403764	+
Frame-shit	ENST00000513610	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
Frame-shit	ENST00000507288	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
intron-3CDS	ENST00000274203	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
intron-3CDS	ENST00000515803	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
intron-3CDS	ENST00000427430	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
intron-3CDS	ENST00000505695	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
intron-3CDS	ENST00000512061	ENST00000308683		TCGA	LD	LUAD	TCGA-50-5944-01A	MYO10	chr5	16877718	-	ZNF622	chr5	16458738	-
Frame-shit	ENST00000023939	ENST00000378004		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000023939	ENST00000274498		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
5CDS-intron	ENST00000023939	ENST00000486650		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000395881	ENST00000378004		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000395881	ENST00000274498		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
5CDS-intron	ENST00000395881	ENST00000486650		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000357348	ENST00000378004		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000357348	ENST00000274498		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
5CDS-intron	ENST00000357348	ENST00000486650		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
3UTR-3CDS	ENST00000484084	ENST00000378004		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
3UTR-3CDS	ENST00000484084	ENST00000274498		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
3UTR-intron	ENST00000484084	ENST00000486650		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000435342	ENST00000378004		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
Frame-shit	ENST00000435342	ENST00000274498		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
5CDS-intron	ENST00000435342	ENST00000486650		TCGA	LD	LUAD	TCGA-50-5944-01A	RTFDC1	chr20	55043822	+	ARHGAP26	chr5	142252965	+
intron-3CDS	ENST00000504881	ENST00000312511		TCGA	LD	LUAD	TCGA-50-5944-01A	SRFBP1	chr5	121330365	+	PRM1	chr16	11375087	-
In-frame	ENST00000339397	ENST00000312511		TCGA	LD	LUAD	TCGA-50-5944-01A	SRFBP1	chr5	121330365	+	PRM1	chr16	11375087	-
5CDS-intron	ENST00000382192	ENST00000339021		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000355803		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000325437		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000397514		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000397515		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000403747		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000566587		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000406620		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000382192	ENST00000402301		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000339021		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000355803		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000325437		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000397514		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000397515		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000403747		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000566587		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000406620		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
5CDS-intron	ENST00000219091	ENST00000402301		TCGA	LD	LUAD	TCGA-50-5944-01A	ZNF205	chr16	3163488	+	UBE2I	chr16	1370439	+
In-frame	ENST00000290943	ENST00000374232		TCGA	LD	LUAD	TCGA-50-5946-01A	ANKRD18B	chr9	33550577	+	SNX30	chr9	115598494	+
5CDS-intron	ENST00000290943	ENST00000604751		TCGA	LD	LUAD	TCGA-50-5946-01A	ANKRD18B	chr9	33550577	+	SNX30	chr9	115598494	+
intron-3CDS	ENST00000426460	ENST00000374232		TCGA	LD	LUAD	TCGA-50-5946-01A	ANKRD18B	chr9	33550577	+	SNX30	chr9	115598494	+
intron-intron	ENST00000426460	ENST00000604751		TCGA	LD	LUAD	TCGA-50-5946-01A	ANKRD18B	chr9	33550577	+	SNX30	chr9	115598494	+
In-frame	ENST00000375749	ENST00000374864		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
In-frame	ENST00000375749	ENST00000535650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
In-frame	ENST00000375749	ENST00000262650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
5CDS-intron	ENST00000375749	ENST00000483727		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
In-frame	ENST00000375730	ENST00000374864		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
In-frame	ENST00000375730	ENST00000535650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
In-frame	ENST00000375730	ENST00000262650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
5CDS-intron	ENST00000375730	ENST00000483727		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
intron-3CDS	ENST00000539210	ENST00000374864		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
intron-3CDS	ENST00000539210	ENST00000535650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
intron-3CDS	ENST00000539210	ENST00000262650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
intron-intron	ENST00000539210	ENST00000483727		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
3UTR-3CDS	ENST00000486717	ENST00000374864		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
3UTR-3CDS	ENST00000486717	ENST00000535650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
3UTR-3CDS	ENST00000486717	ENST00000262650		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
3UTR-intron	ENST00000486717	ENST00000483727		TCGA	LD	LUAD	TCGA-50-6590-01A	POFUT1	chr20	30804524	+	ITCH	chr20	33030013	+
Frame-shit	ENST00000448507	ENST00000308219		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000448507	ENST00000528841		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000448507	ENST00000531197		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000448507	ENST00000308230		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000448507	ENST00000526678		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-5UTR	ENST00000448507	ENST00000528710		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-5UTR	ENST00000448507	ENST00000382179		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-intron	ENST00000448507	ENST00000544817		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000409757	ENST00000308219		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000409757	ENST00000528841		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000409757	ENST00000531197		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000409757	ENST00000308230		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
Frame-shit	ENST00000409757	ENST00000526678		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-5UTR	ENST00000409757	ENST00000528710		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-5UTR	ENST00000409757	ENST00000382179		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-intron	ENST00000409757	ENST00000544817		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000410031	ENST00000308219		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000410031	ENST00000528841		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000410031	ENST00000531197		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000410031	ENST00000308230		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000410031	ENST00000526678		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-5UTR	ENST00000410031	ENST00000528710		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-5UTR	ENST00000410031	ENST00000382179		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-intron	ENST00000410031	ENST00000544817		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000451522	ENST00000308219		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000451522	ENST00000528841		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000451522	ENST00000531197		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000451522	ENST00000308230		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000451522	ENST00000526678		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-5UTR	ENST00000451522	ENST00000528710		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-5UTR	ENST00000451522	ENST00000382179		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-intron	ENST00000451522	ENST00000544817		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000446947	ENST00000308219		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000446947	ENST00000528841		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000446947	ENST00000531197		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000446947	ENST00000308230		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-3CDS	ENST00000446947	ENST00000526678		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-5UTR	ENST00000446947	ENST00000528710		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-5UTR	ENST00000446947	ENST00000382179		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
intron-intron	ENST00000446947	ENST00000544817		TCGA	LD	LUAD	TCGA-50-6590-01A	TBC1D14	chr4	6925838	+	BRSK2	chr11	1457270	+
5CDS-intron	ENST00000358026	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000358026	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000344626	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000344626	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000429416	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000429416	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000541122	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000541122	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000589677	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000589677	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000444061	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000444061	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000590574	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000590574	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000413806	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000413806	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000450717	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000450717	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000538456	ENST00000379561		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5CDS-intron	ENST00000538456	ENST00000473775		TCGA	LD	LUAD	TCGA-50-6591-01A	SMARCA4	chr19	11152236	+	FOXO1	chr13	41048232	-
5UTR-3CDS	ENST00000541110	ENST00000372808		TCGA	LD	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330735	-	GNMT	chr6	42929950	+
5UTR-3CDS	ENST00000372917	ENST00000372808		TCGA	LD	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330735	-	GNMT	chr6	42929950	+
5UTR-3CDS	ENST00000372922	ENST00000372808		TCGA	LD	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330735	-	GNMT	chr6	42929950	+
intron-3CDS	ENST00000340840	ENST00000372808		TCGA	LD	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330735	-	GNMT	chr6	42929950	+
intron-3CDS	ENST00000354325	ENST00000372808		TCGA	LD	LUAD	TCGA-50-6591-01A	TRERF1	chr6	42330735	-	GNMT	chr6	42929950	+
In-frame	ENST00000312026	ENST00000539787		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
Frame-shit	ENST00000312026	ENST00000345358		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000312026	ENST00000391871		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000312026	ENST00000415969		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000312026	ENST00000354470		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000312026	ENST00000293288		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5UTR-3CDS	ENST00000536263	ENST00000539787		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5UTR-3CDS	ENST00000536263	ENST00000345358		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000536263	ENST00000391871		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000536263	ENST00000415969		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000536263	ENST00000354470		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000536263	ENST00000293288		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
In-frame	ENST00000595559	ENST00000539787		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
Frame-shit	ENST00000595559	ENST00000345358		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000595559	ENST00000391871		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000595559	ENST00000415969		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000595559	ENST00000354470		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000595559	ENST00000293288		TCGA	LD	LUAD	TCGA-50-6591-01A	ZNF417	chr19	58423428	-	BAX	chr19	49464067	+
5CDS-intron	ENST00000457422	ENST00000283558		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000457422	ENST00000375630		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000457422	ENST00000487903		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000457422	ENST00000375645		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-3UTR	ENST00000457422	ENST00000419448		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000315286	ENST00000283558		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000315286	ENST00000375630		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000315286	ENST00000487903		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000315286	ENST00000375645		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-3UTR	ENST00000315286	ENST00000419448		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000588210	ENST00000283558		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000588210	ENST00000375630		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000588210	ENST00000487903		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000588210	ENST00000375645		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5CDS-3UTR	ENST00000588210	ENST00000419448		TCGA	LD	LUAD	TCGA-50-6593-01A	CCDC43	chr17	42766918	-	ATP11A	chr13	113371636	+
5UTR-3CDS	ENST00000215906	ENST00000396821		TCGA	LD	LUAD	TCGA-50-6594-01A	ASPHD2	chr22	26825452	+	DDX17	chr22	38888120	-
5UTR-intron	ENST00000215906	ENST00000444597		TCGA	LD	LUAD	TCGA-50-6594-01A	ASPHD2	chr22	26825452	+	DDX17	chr22	38888120	-
5UTR-intron	ENST00000215906	ENST00000381633		TCGA	LD	LUAD	TCGA-50-6594-01A	ASPHD2	chr22	26825452	+	DDX17	chr22	38888120	-
5UTR-5UTR	ENST00000215906	ENST00000432525		TCGA	LD	LUAD	TCGA-50-6594-01A	ASPHD2	chr22	26825452	+	DDX17	chr22	38888120	-
5CDS-intron	ENST00000357559	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000357559	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000305586	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
intron-intron	ENST00000491674	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000491062	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000468861	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000445140	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000543106		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000389385		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000447659		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000551052		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000415485		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000548866		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000420983		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5CDS-intron	ENST00000480918	ENST00000549913		TCGA	LD	LUAD	TCGA-50-6595-01A	FXR1	chr3	180675716	+	RPH3A	chr12	113155811	+
5UTR-5UTR	ENST00000586178	ENST00000300408		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
5UTR-5UTR	ENST00000586178	ENST00000511832		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
5UTR-intron	ENST00000586178	ENST00000508009		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000415868	ENST00000300408		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000415868	ENST00000511832		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-intron	ENST00000415868	ENST00000508009		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
5UTR-5UTR	ENST00000376381	ENST00000300408		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
5UTR-5UTR	ENST00000376381	ENST00000511832		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
5UTR-intron	ENST00000376381	ENST00000508009		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000593259	ENST00000300408		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000593259	ENST00000511832		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-intron	ENST00000593259	ENST00000508009		TCGA	LD	LUAD	TCGA-50-6595-01A	MBTD1	chr17	49336504	-	PHB	chr17	47490653	-
intron-intron	ENST00000556611	ENST00000590652		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000556611	ENST00000587129		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000556611	ENST00000590842		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000556611	ENST00000334295		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000556611	ENST00000593035		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000556611	ENST00000383056		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000556611	ENST00000589049		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000590652		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000587129		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000590842		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000334295		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000593035		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000383056		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-intron	ENST00000539826	ENST00000589049		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000590652		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000587129		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000590842		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000334295		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000593035		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000383056		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5CDS-intron	ENST00000396582	ENST00000589049		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000590652		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000587129		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000590842		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000334295		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000593035		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000383056		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000432921	ENST00000589049		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000590652		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000587129		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000590842		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000334295		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000593035		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000383056		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000345122	ENST00000589049		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000590652		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000587129		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000590842		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000334295		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000593035		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000383056		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
5UTR-intron	ENST00000433497	ENST00000589049		TCGA	LD	LUAD	TCGA-50-6673-01A	ARHGAP5	chr14	32546641	+	TPGS2	chr18	34387897	-
intron-3CDS	ENST00000341217	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000341217	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000341217	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000341217	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000341217	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000341217	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581407	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581407	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581407	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581407	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581407	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581407	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582266	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582266	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582266	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582266	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582266	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582266	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
5UTR-3CDS	ENST00000452648	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
5UTR-3CDS	ENST00000452648	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
5UTR-3CDS	ENST00000452648	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
5UTR-3CDS	ENST00000452648	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
5UTR-3CDS	ENST00000452648	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
5UTR-3CDS	ENST00000452648	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582059	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582059	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582059	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582059	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582059	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000582059	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583953	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583953	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583953	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583953	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583953	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583953	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000577682	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000577682	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000577682	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000577682	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000577682	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000577682	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583522	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583522	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583522	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583522	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583522	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000583522	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581381	ENST00000287272		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581381	ENST00000453357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581381	ENST00000404895		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581381	ENST00000420357		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581381	ENST00000416672		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000581381	ENST00000449677		TCGA	LD	LUAD	TCGA-50-6673-01A	FAM222B	chr17	27139227	-	UNC5D	chr8	35608100	+
intron-3CDS	ENST00000286091	ENST00000394395		TCGA	LD	LUAD	TCGA-50-6673-01A	PDIA4	chr7	148701036	-	TADA2A	chr17	35825535	+
intron-3CDS	ENST00000286091	ENST00000586023		TCGA	LD	LUAD	TCGA-50-6673-01A	PDIA4	chr7	148701036	-	TADA2A	chr17	35825535	+
intron-3CDS	ENST00000286091	ENST00000225396		TCGA	LD	LUAD	TCGA-50-6673-01A	PDIA4	chr7	148701036	-	TADA2A	chr17	35825535	+
intron-3CDS	ENST00000286091	ENST00000417170		TCGA	LD	LUAD	TCGA-50-6673-01A	PDIA4	chr7	148701036	-	TADA2A	chr17	35825535	+
intron-3UTR	ENST00000286091	ENST00000591992		TCGA	LD	LUAD	TCGA-50-6673-01A	PDIA4	chr7	148701036	-	TADA2A	chr17	35825535	+
5CDS-intron	ENST00000322644	ENST00000249299		TCGA	LD	LUAD	TCGA-50-6673-01A	POLR2A	chr17	7388176	+	NAA38	chr17	7762149	-
5CDS-intron	ENST00000322644	ENST00000424702		TCGA	LD	LUAD	TCGA-50-6673-01A	POLR2A	chr17	7388176	+	NAA38	chr17	7762149	-
5CDS-intron	ENST00000322644	ENST00000422760		TCGA	LD	LUAD	TCGA-50-6673-01A	POLR2A	chr17	7388176	+	NAA38	chr17	7762149	-
5CDS-intron	ENST00000572844	ENST00000249299		TCGA	LD	LUAD	TCGA-50-6673-01A	POLR2A	chr17	7388176	+	NAA38	chr17	7762149	-
5CDS-intron	ENST00000572844	ENST00000424702		TCGA	LD	LUAD	TCGA-50-6673-01A	POLR2A	chr17	7388176	+	NAA38	chr17	7762149	-
5CDS-intron	ENST00000572844	ENST00000422760		TCGA	LD	LUAD	TCGA-50-6673-01A	POLR2A	chr17	7388176	+	NAA38	chr17	7762149	-
5CDS-3UTR	ENST00000513610	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
5CDS-3UTR	ENST00000513610	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
5CDS-3UTR	ENST00000507288	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
5CDS-3UTR	ENST00000507288	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000274203	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000274203	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000515803	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000515803	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000427430	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000427430	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000505695	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000505695	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000512061	ENST00000474485		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
intron-3UTR	ENST00000512061	ENST00000451315		TCGA	LD	LUAD	TCGA-50-7109-01A	MYO10	chr5	16818118	-	NOL7	chr6	13620440	+
5CDS-3UTR	ENST00000255409	ENST00000519937		TCGA	LD	LUAD	TCGA-50-8460-01A	CHI3L1	chr1	203151859	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000255409	ENST00000342375		TCGA	LD	LUAD	TCGA-50-8460-01A	CHI3L1	chr1	203151859	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000255409	ENST00000393822		TCGA	LD	LUAD	TCGA-50-8460-01A	CHI3L1	chr1	203151859	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000255409	ENST00000409383		TCGA	LD	LUAD	TCGA-50-8460-01A	CHI3L1	chr1	203151859	-	SFTPB	chr2	85886805	-
Frame-shit	ENST00000395680	ENST00000406915		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
Frame-shit	ENST00000395680	ENST00000402753		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
Frame-shit	ENST00000395681	ENST00000406915		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
In-frame	ENST00000395681	ENST00000402753		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
Frame-shit	ENST00000252029	ENST00000406915		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
In-frame	ENST00000252029	ENST00000402753		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
Frame-shit	ENST00000395678	ENST00000406915		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
In-frame	ENST00000395678	ENST00000402753		TCGA	LD	LUAD	TCGA-53-7624-01A	TYMP	chr22	50966941	-	SYCE3	chr22	50989831	-
Frame-shit	ENST00000394532	ENST00000377897		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
Frame-shit	ENST00000394532	ENST00000294179		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
Frame-shit	ENST00000394532	ENST00000394690		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
Frame-shit	ENST00000394532	ENST00000541317		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
Frame-shit	ENST00000309032	ENST00000377897		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
In-frame	ENST00000309032	ENST00000294179		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
Frame-shit	ENST00000309032	ENST00000394690		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
Frame-shit	ENST00000309032	ENST00000541317		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000544785	ENST00000377897		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000544785	ENST00000294179		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000544785	ENST00000394690		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000544785	ENST00000541317		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000394531	ENST00000377897		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000394531	ENST00000294179		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000394531	ENST00000394690		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000394531	ENST00000541317		TCGA	LD	LUAD	TCGA-53-7813-01A	BAD	chr11	64039085	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000566231	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-3CDS	ENST00000566231	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-intron	ENST00000566231	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000570195	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000570195	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000570195	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000486645	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000486645	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000486645	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000219400	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000219400	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000219400	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-3CDS	ENST00000564249	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-3CDS	ENST00000564249	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-intron	ENST00000564249	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-3CDS	ENST00000565914	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-3CDS	ENST00000565914	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
intron-intron	ENST00000565914	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000565925	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000565925	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000565925	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000565108	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000565108	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000565108	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000564174	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000564174	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000564174	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000562713	ENST00000261336		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-3CDS	ENST00000562713	ENST00000381997		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5UTR-intron	ENST00000562713	ENST00000539983		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	CMC2	chr16	81040339	-	PZP	chr12	9312621	-
5CDS-5UTR	ENST00000321685	ENST00000279249		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000321685	ENST00000533419		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000321685	ENST00000544348		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000355040	ENST00000279249		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000355040	ENST00000533419		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000355040	ENST00000544348		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000321460	ENST00000279249		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000321460	ENST00000533419		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000321460	ENST00000544348		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	DNAJC4	chr11	63999436	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000255681	ENST00000323646		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	MACROD1	chr11	63918711	-	PLA2G16	chr11	63381540	-
5CDS-5UTR	ENST00000255681	ENST00000415826		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	MACROD1	chr11	63918711	-	PLA2G16	chr11	63381540	-
5CDS-5UTR	ENST00000255681	ENST00000394613		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	MACROD1	chr11	63918711	-	PLA2G16	chr11	63381540	-
5UTR-5UTR	ENST00000538595	ENST00000323646		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	MACROD1	chr11	63918711	-	PLA2G16	chr11	63381540	-
5UTR-5UTR	ENST00000538595	ENST00000415826		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	MACROD1	chr11	63918711	-	PLA2G16	chr11	63381540	-
5UTR-5UTR	ENST00000538595	ENST00000394613		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	MACROD1	chr11	63918711	-	PLA2G16	chr11	63381540	-
In-frame	ENST00000265465	ENST00000398992		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	POLA2	chr11	65049992	+	OOSP1	chr11	59710320	+
In-frame	ENST00000541089	ENST00000398992		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	POLA2	chr11	65049992	+	OOSP1	chr11	59710320	+
intron-3CDS	ENST00000534785	ENST00000398992		TCGA	LD	LUAD	TCGA-53-A4EZ-01A	POLA2	chr11	65049992	+	OOSP1	chr11	59710320	+
Frame-shit	ENST00000370187	ENST00000346872		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000394189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000439167		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000535189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000377944		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000377945		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000377952		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000377958		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000346243		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000350532		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000351680		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000467757		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000370187	ENST00000439016		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000370187	ENST00000583368		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000346872		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000394189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000439167		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000535189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000377944		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000377945		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000377952		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000377958		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000346243		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000350532		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000351680		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000467757		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000393441	ENST00000439016		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000393441	ENST00000583368		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000346872		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000394189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000439167		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000535189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000377944		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000377945		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000377952		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000377958		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000346243		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000350532		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000351680		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000467757		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000408038	ENST00000439016		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000408038	ENST00000583368		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000346872		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000394189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000439167		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000535189		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000377944		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000377945		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000377952		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000377958		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000346243		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000350532		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000351680		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000467757		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000493877	ENST00000439016		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000493877	ENST00000583368		TCGA	LD	LUAD	TCGA-55-1592-01A	BTRC	chr10	103221815	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000336061	ENST00000597275		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000336061	ENST00000496529		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000336061	ENST00000376396		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000336061	ENST00000422185		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000336061	ENST00000603986		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000336061	ENST00000536628		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000542104	ENST00000597275		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000542104	ENST00000496529		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000542104	ENST00000376396		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000542104	ENST00000422185		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000542104	ENST00000603986		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
Frame-shit	ENST00000542104	ENST00000536628		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000540088	ENST00000597275		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000540088	ENST00000496529		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000540088	ENST00000376396		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000540088	ENST00000422185		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000540088	ENST00000603986		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000540088	ENST00000536628		TCGA	LD	LUAD	TCGA-55-1592-01A	RASSF3	chr12	65085359	+	CCDC120	chrX	48924712	+
intron-3CDS	ENST00000409257	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
intron-3CDS	ENST00000589256	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
intron-3CDS	ENST00000588800	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
intron-3CDS	ENST00000591952	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
intron-3CDS	ENST00000327898	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
intron-3CDS	ENST00000586731	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
intron-3CDS	ENST00000589664	ENST00000461719		TCGA	LD	LUAD	TCGA-55-1594-01A	AFMID	chr17	76186845	+	IGHJ4	chr14	106330464	-
5UTR-3CDS	ENST00000536774	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-intron	ENST00000536774	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-3CDS	ENST00000327441	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-intron	ENST00000327441	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-3CDS	ENST00000539062	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-intron	ENST00000539062	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-3CDS	ENST00000556451	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-intron	ENST00000556451	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-3CDS	ENST00000396294	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
5UTR-intron	ENST00000396294	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
intron-3CDS	ENST00000545536	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
intron-intron	ENST00000545536	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
intron-3CDS	ENST00000537471	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
intron-intron	ENST00000537471	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
intron-3CDS	ENST00000539174	ENST00000518529		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
intron-intron	ENST00000539174	ENST00000518987		TCGA	LD	LUAD	TCGA-55-1594-01A	MIPOL1	chr14	37667309	+	SFTA3	chr14	36946303	-
3UTR-3CDS	ENST00000217320	ENST00000357156		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-3UTR	ENST00000217320	ENST00000480759		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-3UTR	ENST00000217320	ENST00000417166		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-intron	ENST00000217320	ENST00000300469		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-intron	ENST00000217320	ENST00000374846		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-3CDS	ENST00000602922	ENST00000357156		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-3UTR	ENST00000602922	ENST00000480759		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-3UTR	ENST00000602922	ENST00000417166		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-intron	ENST00000602922	ENST00000300469		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
3UTR-intron	ENST00000602922	ENST00000374846		TCGA	LD	LUAD	TCGA-55-1594-01A	TLDC2	chr20	35517806	+	DYNLRB1	chr20	33122432	+
intron-5UTR	ENST00000341217	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000341217	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000341217	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000341217	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000581407	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000581407	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000581407	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000581407	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000582266	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000582266	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000582266	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000582266	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
5UTR-5UTR	ENST00000452648	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
5UTR-intron	ENST00000452648	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
5UTR-intron	ENST00000452648	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
5UTR-intron	ENST00000452648	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000582059	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000582059	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000582059	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000582059	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000583953	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000583953	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000583953	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000583953	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000577682	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000577682	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000577682	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000577682	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000583522	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000583522	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000583522	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000583522	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-5UTR	ENST00000581381	ENST00000423902		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000581381	ENST00000524602		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000581381	ENST00000525508		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
intron-intron	ENST00000581381	ENST00000529472		TCGA	LD	LUAD	TCGA-55-1595-01A	FAM222B	chr17	27139227	-	CHD7	chr8	61653818	+
5UTR-3CDS	ENST00000263056	ENST00000506092		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
5UTR-3CDS	ENST00000263056	ENST00000399564		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
5UTR-3CDS	ENST00000542547	ENST00000506092		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
5UTR-3CDS	ENST00000542547	ENST00000399564		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
5UTR-3CDS	ENST00000375322	ENST00000506092		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
5UTR-3CDS	ENST00000375322	ENST00000399564		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
intron-3CDS	ENST00000375321	ENST00000506092		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
intron-3CDS	ENST00000375321	ENST00000399564		TCGA	LD	LUAD	TCGA-55-1596-01A	MAP3K8	chr10	30723307	+	MROH2B	chr5	41019120	-
In-frame	ENST00000506092	ENST00000507110		TCGA	LD	LUAD	TCGA-55-1596-01A	MROH2B	chr5	41017952	-	MRPS30	chr5	44813208	+
5CDS-intron	ENST00000506092	ENST00000230914		TCGA	LD	LUAD	TCGA-55-1596-01A	MROH2B	chr5	41017952	-	MRPS30	chr5	44813208	+
In-frame	ENST00000399564	ENST00000507110		TCGA	LD	LUAD	TCGA-55-1596-01A	MROH2B	chr5	41017952	-	MRPS30	chr5	44813208	+
5CDS-intron	ENST00000399564	ENST00000230914		TCGA	LD	LUAD	TCGA-55-1596-01A	MROH2B	chr5	41017952	-	MRPS30	chr5	44813208	+
Frame-shit	ENST00000596304	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596304	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000596304	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000430157	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000430157	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000596273	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000596273	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000442744	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000442744	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595683	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000595683	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000595158	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000595158	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000598780	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000598780	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599551	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000599551	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000597451	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000597451	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000335762		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399655		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000480911		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399644		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000344100		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399638		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399629		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399597		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000327702		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399621		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399649		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399637		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000402845		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399591		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399641		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000347598		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399606		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399595		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399601		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399603		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399634		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000399617		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
Frame-shit	ENST00000599595	ENST00000406454		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
5CDS-intron	ENST00000599595	ENST00000491104		TCGA	LD	LUAD	TCGA-55-1596-01A	UBA52	chr19	18684558	+	CACNA1C	chr12	2721069	+
In-frame	ENST00000397843	ENST00000527185		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000528682		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000524871		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000418526		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000397843	ENST00000279463		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5CDS-intron	ENST00000397843	ENST00000524560		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000356641	ENST00000527185		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000356641	ENST00000528682		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000356641	ENST00000524871		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000356641	ENST00000418526		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000356641	ENST00000279463		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5CDS-intron	ENST00000356641	ENST00000524560		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000527185		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000528682		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000524871		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000418526		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5UTR-3CDS	ENST00000532993	ENST00000279463		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
5UTR-intron	ENST00000532993	ENST00000524560		TCGA	LD	LUAD	TCGA-55-6642-01A	ARHGEF12	chr11	120278532	+	CNTN5	chr11	99786786	+
In-frame	ENST00000374746	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000374746	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374746	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374746	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374746	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374746	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374746	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374746	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374748	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374748	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374748	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374748	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374748	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374748	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374748	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374749	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374749	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374749	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374749	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374749	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374749	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374749	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374751	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374751	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374751	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374751	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374751	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374751	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374751	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000602371	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000602371	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000602371	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000602371	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000602371	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000602371	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000602371	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000374742	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374742	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374742	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374742	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374742	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374742	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000374742	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
In-frame	ENST00000537177	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000537177	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000537177	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000537177	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000537177	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000537177	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
5CDS-intron	ENST00000537177	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000545260		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000545693		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000350537		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000346874		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000374789		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000374790		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000374794		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-3CDS	ENST00000478044	ENST00000374788		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-intron	ENST00000478044	ENST00000466092		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-intron	ENST00000478044	ENST00000374776		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-intron	ENST00000478044	ENST00000340077		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-intron	ENST00000478044	ENST00000544292		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-intron	ENST00000478044	ENST00000374773		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
intron-intron	ENST00000478044	ENST00000374768		TCGA	LD	LUAD	TCGA-55-6642-01A	CUL2	chr10	35333494	-	PARD3	chr10	34806087	-
Frame-shit	ENST00000327671	ENST00000318388		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5CDS-intron	ENST00000327671	ENST00000497577		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5CDS-intron	ENST00000327671	ENST00000400033		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5CDS-intron	ENST00000327671	ENST00000465096		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-3CDS	ENST00000518672	ENST00000318388		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000518672	ENST00000497577		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000518672	ENST00000400033		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000518672	ENST00000465096		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-3CDS	ENST00000524021	ENST00000318388		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000524021	ENST00000497577		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000524021	ENST00000400033		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000524021	ENST00000465096		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5UTR-3CDS	ENST00000335589	ENST00000318388		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5UTR-intron	ENST00000335589	ENST00000497577		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5UTR-intron	ENST00000335589	ENST00000400033		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5UTR-intron	ENST00000335589	ENST00000465096		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-3CDS	ENST00000518076	ENST00000318388		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000518076	ENST00000497577		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000518076	ENST00000400033		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
intron-intron	ENST00000518076	ENST00000465096		TCGA	LD	LUAD	TCGA-55-6642-01A	FUT10	chr8	33318890	-	NDUFV2	chr18	9117836	+
5CDS-5UTR	ENST00000256682	ENST00000315585		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000256682	ENST00000266880		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000256682	ENST00000443047		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000256682	ENST00000450056		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000256682	ENST00000537522		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000256682	ENST00000541837		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000256682	ENST00000432561		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000256682	ENST00000541341		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000447318	ENST00000315585		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000447318	ENST00000266880		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000447318	ENST00000443047		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000447318	ENST00000450056		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000447318	ENST00000537522		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000447318	ENST00000541837		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000447318	ENST00000432561		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000447318	ENST00000541341		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000541959	ENST00000315585		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000541959	ENST00000266880		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000541959	ENST00000443047		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000541959	ENST00000450056		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000541959	ENST00000537522		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000541959	ENST00000541837		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-5UTR	ENST00000541959	ENST00000432561		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
5CDS-intron	ENST00000541959	ENST00000541341		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-5UTR	ENST00000541967	ENST00000315585		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-5UTR	ENST00000541967	ENST00000266880		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-5UTR	ENST00000541967	ENST00000443047		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-5UTR	ENST00000541967	ENST00000450056		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-intron	ENST00000541967	ENST00000537522		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-intron	ENST00000541967	ENST00000541837		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-5UTR	ENST00000541967	ENST00000432561		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-intron	ENST00000541967	ENST00000541341		TCGA	LD	LUAD	TCGA-55-6712-01A	ARF3	chr12	49334731	-	CHFR	chr12	133463926	-
intron-3CDS	ENST00000313833	ENST00000541773		TCGA	LD	LUAD	TCGA-55-6712-01A	FBXO34	chr14	55821940	+	NID2	chr14	52509649	-
intron-3CDS	ENST00000313833	ENST00000216286		TCGA	LD	LUAD	TCGA-55-6712-01A	FBXO34	chr14	55821940	+	NID2	chr14	52509649	-
intron-3CDS	ENST00000555087	ENST00000541773		TCGA	LD	LUAD	TCGA-55-6712-01A	FBXO34	chr14	55821940	+	NID2	chr14	52509649	-
intron-3CDS	ENST00000555087	ENST00000216286		TCGA	LD	LUAD	TCGA-55-6712-01A	FBXO34	chr14	55821940	+	NID2	chr14	52509649	-
intron-3CDS	ENST00000440021	ENST00000541773		TCGA	LD	LUAD	TCGA-55-6712-01A	FBXO34	chr14	55821940	+	NID2	chr14	52509649	-
intron-3CDS	ENST00000440021	ENST00000216286		TCGA	LD	LUAD	TCGA-55-6712-01A	FBXO34	chr14	55821940	+	NID2	chr14	52509649	-
intron-3CDS	ENST00000405402	ENST00000436648		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000405402	ENST00000321919		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000405402	ENST00000381983		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000405402	ENST00000591451		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-intron	ENST00000405402	ENST00000586901		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000253458	ENST00000436648		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000253458	ENST00000321919		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000253458	ENST00000381983		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000253458	ENST00000591451		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-intron	ENST00000253458	ENST00000586901		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000393243	ENST00000436648		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000393243	ENST00000321919		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000393243	ENST00000381983		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000393243	ENST00000591451		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-intron	ENST00000393243	ENST00000586901		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000471070	ENST00000436648		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000471070	ENST00000321919		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000471070	ENST00000381983		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-3CDS	ENST00000471070	ENST00000591451		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
intron-intron	ENST00000471070	ENST00000586901		TCGA	LD	LUAD	TCGA-55-6968-01A	GSE1	chr16	85589969	+	GLYR1	chr16	4855311	-
5UTR-3CDS	ENST00000474820	ENST00000375258		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
5UTR-intron	ENST00000474820	ENST00000463392		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
Frame-shit	ENST00000348849	ENST00000375258		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
5CDS-intron	ENST00000348849	ENST00000463392		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
intron-3CDS	ENST00000409075	ENST00000375258		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
intron-intron	ENST00000409075	ENST00000463392		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
intron-3CDS	ENST00000409289	ENST00000375258		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
intron-intron	ENST00000409289	ENST00000463392		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
Frame-shit	ENST00000392753	ENST00000375258		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
5CDS-intron	ENST00000392753	ENST00000463392		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
intron-3CDS	ENST00000409972	ENST00000375258		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
intron-intron	ENST00000409972	ENST00000463392		TCGA	LD	LUAD	TCGA-55-6968-01A	RBMS1	chr2	161349800	-	METTL8	chr2	172196064	-
5CDS-intron	ENST00000260408	ENST00000249750		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000260408	ENST00000347587		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000260408	ENST00000537372		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000260408	ENST00000558231		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000260408	ENST00000559517		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000260408	ENST00000559579		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000402627	ENST00000249750		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000402627	ENST00000347587		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000402627	ENST00000537372		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000402627	ENST00000558231		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000402627	ENST00000559517		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000402627	ENST00000559579		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000561288	ENST00000249750		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000561288	ENST00000347587		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000561288	ENST00000537372		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000561288	ENST00000558231		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000561288	ENST00000559517		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000561288	ENST00000559579		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000396140	ENST00000249750		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000396140	ENST00000347587		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000396140	ENST00000537372		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000396140	ENST00000558231		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000396140	ENST00000559517		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5CDS-intron	ENST00000396140	ENST00000559579		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5UTR-intron	ENST00000558733	ENST00000249750		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5UTR-intron	ENST00000558733	ENST00000347587		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5UTR-intron	ENST00000558733	ENST00000537372		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5UTR-intron	ENST00000558733	ENST00000558231		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5UTR-intron	ENST00000558733	ENST00000559517		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
5UTR-intron	ENST00000558733	ENST00000559579		TCGA	LD	LUAD	TCGA-55-6969-01A	ADAM10	chr15	59041679	-	ALDH1A2	chr15	58712304	-
Frame-shit	ENST00000222330	ENST00000601181		TCGA	LD	LUAD	TCGA-55-6969-01A	GSK3A	chr19	42744107	-	CXCL17	chr19	42933133	-
Frame-shit	ENST00000398249	ENST00000601181		TCGA	LD	LUAD	TCGA-55-6969-01A	GSK3A	chr19	42744107	-	CXCL17	chr19	42933133	-
In-frame	ENST00000379719	ENST00000299576		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000309377		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000309357		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000529876		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000525005		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000534506		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000396648		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
In-frame	ENST00000379719	ENST00000534147		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000299576		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000309377		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000309357		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000529876		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000525005		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000534506		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000396648		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
intron-3CDS	ENST00000533680	ENST00000534147		TCGA	LD	LUAD	TCGA-55-6969-01A	IPO7	chr11	9442245	+	AKIP1	chr11	8936373	+
Frame-shit	ENST00000449802	ENST00000402905		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
Frame-shit	ENST00000449802	ENST00000444724		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000471271		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000545253		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000414439		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000428585		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000545262		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000456821		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000434998		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000320443		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-3UTR	ENST00000449802	ENST00000438828		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3CDS	ENST00000478884	ENST00000402905		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3CDS	ENST00000478884	ENST00000444724		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000471271		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000545253		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000414439		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000428585		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000545262		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000456821		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000434998		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000320443		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
intron-3UTR	ENST00000478884	ENST00000438828		TCGA	LD	LUAD	TCGA-55-6969-01A	NBEAL1	chr2	204022548	+	CARF	chr2	203817282	+
5CDS-5UTR	ENST00000430725	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000430725	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000430725	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000325438	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000325438	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000325438	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000458164	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000458164	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000458164	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000447393	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000447393	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000447393	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000547217	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000547217	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-5UTR	ENST00000547217	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
intron-5UTR	ENST00000551743	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
intron-5UTR	ENST00000551743	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
intron-5UTR	ENST00000551743	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
intron-5UTR	ENST00000551801	ENST00000557649		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
intron-5UTR	ENST00000551801	ENST00000331952		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
intron-5UTR	ENST00000551801	ENST00000410013		TCGA	LD	LUAD	TCGA-55-6969-01A	PACS2	chr14	105821514	+	C14orf180	chr14	105052752	+
5CDS-intron	ENST00000325083	ENST00000256246		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-5UTR	ENST00000325083	ENST00000523186		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-intron	ENST00000519253	ENST00000256246		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-5UTR	ENST00000519253	ENST00000523186		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-intron	ENST00000524226	ENST00000256246		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-5UTR	ENST00000524226	ENST00000523186		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
intron-intron	ENST00000518537	ENST00000256246		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
intron-5UTR	ENST00000518537	ENST00000523186		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
intron-intron	ENST00000518936	ENST00000256246		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
intron-5UTR	ENST00000518936	ENST00000523186		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-intron	ENST00000327578	ENST00000256246		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
5CDS-5UTR	ENST00000327578	ENST00000523186		TCGA	LD	LUAD	TCGA-55-6969-01A	PCM1	chr8	17851128	+	TEX15	chr8	30717573	-
intron-3CDS	ENST00000287263	ENST00000355221		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000287263	ENST00000520188		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000287263	ENST00000359530		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000287263	ENST00000523899		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000287263	ENST00000396774		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000330843	ENST00000355221		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000330843	ENST00000520188		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000330843	ENST00000359530		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000330843	ENST00000523899		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000330843	ENST00000396774		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000522727	ENST00000355221		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000522727	ENST00000520188		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000522727	ENST00000359530		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000522727	ENST00000523899		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000522727	ENST00000396774		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000523182	ENST00000355221		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000523182	ENST00000520188		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000523182	ENST00000359530		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000523182	ENST00000523899		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000523182	ENST00000396774		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000524118	ENST00000355221		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000524118	ENST00000520188		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-3CDS	ENST00000524118	ENST00000359530		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000524118	ENST00000523899		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
intron-intron	ENST00000524118	ENST00000396774		TCGA	LD	LUAD	TCGA-55-6969-01A	RAB11FIP1	chr8	37720255	-	ATP6V1H	chr8	54714456	-
5CDS-5UTR	ENST00000392325	ENST00000419727		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
5CDS-3UTR	ENST00000392325	ENST00000559773		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000392325	ENST00000437176		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000392325	ENST00000435893		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
5CDS-5UTR	ENST00000392325	ENST00000267569		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
intron-5UTR	ENST00000571835	ENST00000419727		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
intron-3UTR	ENST00000571835	ENST00000559773		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
intron-5UTR	ENST00000571835	ENST00000437176		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
intron-5UTR	ENST00000571835	ENST00000435893		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
intron-5UTR	ENST00000571835	ENST00000267569		TCGA	LD	LUAD	TCGA-55-6969-01A	WDR45B	chr17	80601825	-	JDP2	chr14	75904601	+
Frame-shit	ENST00000519937	ENST00000341756		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
Frame-shit	ENST00000519937	ENST00000360961		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
5CDS-5UTR	ENST00000519937	ENST00000487218		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000342375	ENST00000341756		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000342375	ENST00000360961		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
5CDS-5UTR	ENST00000342375	ENST00000487218		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000393822	ENST00000341756		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000393822	ENST00000360961		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
5CDS-5UTR	ENST00000393822	ENST00000487218		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000409383	ENST00000341756		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000409383	ENST00000360961		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
5CDS-5UTR	ENST00000409383	ENST00000487218		TCGA	LD	LUAD	TCGA-55-6971-01A	SFTPB	chr2	85893739	-	MPC1	chr6	166778937	-
In-frame	ENST00000301335	ENST00000304992		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
In-frame	ENST00000301335	ENST00000572621		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
5CDS-intron	ENST00000301335	ENST00000575116		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
Frame-shit	ENST00000571650	ENST00000304992		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
Frame-shit	ENST00000571650	ENST00000572621		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
5CDS-intron	ENST00000571650	ENST00000575116		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
In-frame	ENST00000382147	ENST00000304992		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
In-frame	ENST00000382147	ENST00000572621		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
5CDS-intron	ENST00000382147	ENST00000575116		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
intron-3CDS	ENST00000412517	ENST00000304992		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
intron-3CDS	ENST00000412517	ENST00000572621		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
intron-intron	ENST00000412517	ENST00000575116		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
intron-3CDS	ENST00000574274	ENST00000304992		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
intron-3CDS	ENST00000574274	ENST00000572621		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
intron-intron	ENST00000574274	ENST00000575116		TCGA	LD	LUAD	TCGA-55-6971-01A	SLC43A2	chr17	1516489	-	PRPF8	chr17	1565447	-
In-frame	ENST00000283351	ENST00000280772		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
In-frame	ENST00000283351	ENST00000373827		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000283351	ENST00000355288		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000283351	ENST00000503366		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000283351	ENST00000510382		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000283351	ENST00000460468		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
intron-3CDS	ENST00000582539	ENST00000280772		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
intron-3CDS	ENST00000582539	ENST00000373827		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
intron-intron	ENST00000582539	ENST00000355288		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
intron-intron	ENST00000582539	ENST00000503366		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
intron-intron	ENST00000582539	ENST00000510382		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
intron-intron	ENST00000582539	ENST00000460468		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
In-frame	ENST00000582513	ENST00000280772		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
In-frame	ENST00000582513	ENST00000373827		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000582513	ENST00000355288		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000582513	ENST00000503366		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000582513	ENST00000510382		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000582513	ENST00000460468		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5UTR-3CDS	ENST00000584876	ENST00000280772		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5UTR-3CDS	ENST00000584876	ENST00000373827		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5UTR-intron	ENST00000584876	ENST00000355288		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5UTR-intron	ENST00000584876	ENST00000503366		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5UTR-intron	ENST00000584876	ENST00000510382		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5UTR-intron	ENST00000584876	ENST00000460468		TCGA	LD	LUAD	TCGA-55-6971-01A	TRAPPC8	chr18	29522571	-	ANK3	chr10	61965648	-
5CDS-intron	ENST00000337147	ENST00000366952		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000337147	ENST00000366953		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000337147	ENST00000491092		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367075	ENST00000366952		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367075	ENST00000366953		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367075	ENST00000491092		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000392177	ENST00000366952		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000392177	ENST00000366953		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000392177	ENST00000491092		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
intron-intron	ENST00000476189	ENST00000366952		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
intron-intron	ENST00000476189	ENST00000366953		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
intron-intron	ENST00000476189	ENST00000491092		TCGA	LD	LUAD	TCGA-55-6972-01A	EZR	chr6	159204552	-	SLC22A2	chr6	160592469	-
In-frame	ENST00000502597	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000502597	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000502597	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000502597	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000502597	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000502597	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000502597	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000502597	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543050	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543050	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543050	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543050	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543050	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543050	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000543050	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000543050	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543587	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543587	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543587	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543587	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543587	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000543587	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000543587	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000543587	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3CDS	ENST00000543015	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3CDS	ENST00000543015	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3CDS	ENST00000543015	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3CDS	ENST00000543015	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3CDS	ENST00000543015	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3CDS	ENST00000543015	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3UTR	ENST00000543015	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-3UTR	ENST00000543015	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000545680	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000545680	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000545680	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000545680	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000545680	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000545680	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000545680	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000545680	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000227618	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000227618	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000227618	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000227618	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000227618	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000227618	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000227618	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000227618	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000542531	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000542531	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000542531	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000542531	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000542531	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000542531	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000542531	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000542531	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000535234	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000535234	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000535234	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000535234	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000535234	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000535234	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000535234	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000535234	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000545944	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000545944	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000545944	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000545944	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000545944	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000545944	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000545944	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000545944	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000538393	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000538393	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000538393	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000538393	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000538393	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000538393	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000538393	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000538393	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000535503	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000535503	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000535503	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000535503	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000535503	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
Frame-shit	ENST00000535503	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000535503	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000535503	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000538919	ENST00000265109		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000538919	ENST00000512629		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000538919	ENST00000428746		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000538919	ENST00000503673		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000538919	ENST00000515799		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
In-frame	ENST00000538919	ENST00000506376		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000538919	ENST00000507276		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000538919	ENST00000397449		TCGA	LD	LUAD	TCGA-55-6975-01A	ANAPC15	chr11	71821134	-	RAI14	chr5	34757573	+
5UTR-5UTR	ENST00000355078	ENST00000504880		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-5UTR	ENST00000355078	ENST00000396865		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000355078	ENST00000539768		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000355078	ENST00000318672		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000355078	ENST00000515629		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000355078	ENST00000416547		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000355078	ENST00000512595		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-5UTR	ENST00000302763	ENST00000504880		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-5UTR	ENST00000302763	ENST00000396865		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000302763	ENST00000539768		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000302763	ENST00000318672		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000302763	ENST00000515629		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000302763	ENST00000416547		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
5UTR-intron	ENST00000302763	ENST00000512595		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-5UTR	ENST00000518825	ENST00000504880		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-5UTR	ENST00000518825	ENST00000396865		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000518825	ENST00000539768		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000518825	ENST00000318672		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000518825	ENST00000515629		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000518825	ENST00000416547		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000518825	ENST00000512595		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-5UTR	ENST00000520400	ENST00000504880		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-5UTR	ENST00000520400	ENST00000396865		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000520400	ENST00000539768		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000520400	ENST00000318672		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000520400	ENST00000515629		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000520400	ENST00000416547		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000520400	ENST00000512595		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-5UTR	ENST00000540387	ENST00000504880		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-5UTR	ENST00000540387	ENST00000396865		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000540387	ENST00000539768		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000540387	ENST00000318672		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000540387	ENST00000515629		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000540387	ENST00000416547		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
intron-intron	ENST00000540387	ENST00000512595		TCGA	LD	LUAD	TCGA-55-6975-01A	CTNNA1	chr5	138089199	+	SLC38A9	chr5	54993820	-
In-frame	ENST00000418930	ENST00000285381		TCGA	LD	LUAD	TCGA-55-6975-01A	E2F5	chr8	86124439	+	CA3	chr8	86351941	+
In-frame	ENST00000256117	ENST00000285381		TCGA	LD	LUAD	TCGA-55-6975-01A	E2F5	chr8	86124439	+	CA3	chr8	86351941	+
In-frame	ENST00000416274	ENST00000285381		TCGA	LD	LUAD	TCGA-55-6975-01A	E2F5	chr8	86124439	+	CA3	chr8	86351941	+
3UTR-3CDS	ENST00000519128	ENST00000285381		TCGA	LD	LUAD	TCGA-55-6975-01A	E2F5	chr8	86124439	+	CA3	chr8	86351941	+
In-frame	ENST00000517476	ENST00000285381		TCGA	LD	LUAD	TCGA-55-6975-01A	E2F5	chr8	86124439	+	CA3	chr8	86351941	+
In-frame	ENST00000521429	ENST00000285381		TCGA	LD	LUAD	TCGA-55-6975-01A	E2F5	chr8	86124439	+	CA3	chr8	86351941	+
5UTR-3CDS	ENST00000244769	ENST00000368087		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
5UTR-3CDS	ENST00000244769	ENST00000356962		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
5UTR-3UTR	ENST00000244769	ENST00000498260		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
5UTR-3CDS	ENST00000436367	ENST00000368087		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
5UTR-3CDS	ENST00000436367	ENST00000356962		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
5UTR-3UTR	ENST00000436367	ENST00000498260		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
intron-3CDS	ENST00000467008	ENST00000368087		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
intron-3CDS	ENST00000467008	ENST00000356962		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
intron-3UTR	ENST00000467008	ENST00000498260		TCGA	LD	LUAD	TCGA-55-6978-01A	ATXN1	chr6	16658007	-	ARG1	chr6	131897803	+
intron-3CDS	ENST00000410107	ENST00000215781		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000410107	ENST00000403389		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-intron	ENST00000410107	ENST00000403463		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
3UTR-3CDS	ENST00000397423	ENST00000215781		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
3UTR-5UTR	ENST00000397423	ENST00000403389		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
3UTR-intron	ENST00000397423	ENST00000403463		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
5UTR-3CDS	ENST00000495262	ENST00000215781		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
5UTR-5UTR	ENST00000495262	ENST00000403389		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
5UTR-intron	ENST00000495262	ENST00000403463		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
5UTR-3CDS	ENST00000379597	ENST00000215781		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
5UTR-5UTR	ENST00000379597	ENST00000403389		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
5UTR-intron	ENST00000379597	ENST00000403463		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-3CDS	ENST00000316170	ENST00000215781		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000316170	ENST00000403389		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-intron	ENST00000316170	ENST00000403463		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-3CDS	ENST00000265012	ENST00000215781		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-5UTR	ENST00000265012	ENST00000403389		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-intron	ENST00000265012	ENST00000403463		TCGA	LD	LUAD	TCGA-55-6978-01A	GCNT2	chr6	10529074	+	OSM	chr22	30661133	-
intron-3CDS	ENST00000374866	ENST00000519937		TCGA	LD	LUAD	TCGA-55-6983-01A	COL5A2	chr2	189897260	-	SFTPB	chr2	85893855	-
intron-3CDS	ENST00000374866	ENST00000342375		TCGA	LD	LUAD	TCGA-55-6983-01A	COL5A2	chr2	189897260	-	SFTPB	chr2	85893855	-
intron-3CDS	ENST00000374866	ENST00000393822		TCGA	LD	LUAD	TCGA-55-6983-01A	COL5A2	chr2	189897260	-	SFTPB	chr2	85893855	-
intron-3CDS	ENST00000374866	ENST00000409383		TCGA	LD	LUAD	TCGA-55-6983-01A	COL5A2	chr2	189897260	-	SFTPB	chr2	85893855	-
In-frame	ENST00000367302	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
5CDS-3UTR	ENST00000367302	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
In-frame	ENST00000367296	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
5CDS-3UTR	ENST00000367296	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
In-frame	ENST00000295624	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
5CDS-3UTR	ENST00000295624	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
In-frame	ENST00000367297	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
5CDS-3UTR	ENST00000367297	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
In-frame	ENST00000367300	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
5CDS-3UTR	ENST00000367300	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
intron-3CDS	ENST00000367295	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
intron-3UTR	ENST00000367295	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
intron-3CDS	ENST00000469130	ENST00000361565		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
intron-3UTR	ENST00000469130	ENST00000464348		TCGA	LD	LUAD	TCGA-55-6987-01A	NAV1	chr1	201618553	+	IPO9	chr1	201816407	+
In-frame	ENST00000561500	ENST00000254958		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000561500	ENST00000423891		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
5CDS-intron	ENST00000561500	ENST00000488480		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000379047	ENST00000254958		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000379047	ENST00000423891		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
5CDS-intron	ENST00000379047	ENST00000488480		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000320623	ENST00000254958		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000320623	ENST00000423891		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
5CDS-intron	ENST00000320623	ENST00000488480		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000379046	ENST00000254958		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000379046	ENST00000423891		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
5CDS-intron	ENST00000379046	ENST00000488480		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000439109	ENST00000254958		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
In-frame	ENST00000439109	ENST00000423891		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
5CDS-intron	ENST00000439109	ENST00000488480		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
intron-3CDS	ENST00000564043	ENST00000254958		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
intron-3CDS	ENST00000564043	ENST00000423891		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
intron-intron	ENST00000564043	ENST00000488480		TCGA	LD	LUAD	TCGA-55-6987-01A	NQO1	chr16	69760336	-	JAG1	chr20	10621892	-
5CDS-intron	ENST00000370812	ENST00000566100		TCGA	LD	LUAD	TCGA-55-6987-01A	PIGK	chr1	77632404	-	SLC25A3P1	chr1	53883338	-
5CDS-intron	ENST00000445065	ENST00000566100		TCGA	LD	LUAD	TCGA-55-6987-01A	PIGK	chr1	77632404	-	SLC25A3P1	chr1	53883338	-
5CDS-intron	ENST00000370813	ENST00000566100		TCGA	LD	LUAD	TCGA-55-6987-01A	PIGK	chr1	77632404	-	SLC25A3P1	chr1	53883338	-
5CDS-intron	ENST00000359130	ENST00000566100		TCGA	LD	LUAD	TCGA-55-6987-01A	PIGK	chr1	77632404	-	SLC25A3P1	chr1	53883338	-
5UTR-intron	ENST00000478391	ENST00000566100		TCGA	LD	LUAD	TCGA-55-6987-01A	PIGK	chr1	77632404	-	SLC25A3P1	chr1	53883338	-
Frame-shit	ENST00000367255	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
5CDS-intron	ENST00000367255	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
Frame-shit	ENST00000356820	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
5CDS-intron	ENST00000356820	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
In-frame	ENST00000423061	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
5CDS-intron	ENST00000423061	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
Frame-shit	ENST00000448038	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
5CDS-intron	ENST00000448038	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
Frame-shit	ENST00000341594	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
5CDS-intron	ENST00000341594	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
Frame-shit	ENST00000265368	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
5CDS-intron	ENST00000265368	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000367253	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000367253	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000367248	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000367248	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000413186	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000413186	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000466159	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000466159	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000539504	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000539504	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000347037	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000347037	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000354674	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000354674	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-3CDS	ENST00000495090	ENST00000338882		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
intron-intron	ENST00000495090	ENST00000490043		TCGA	LD	LUAD	TCGA-55-6987-01A	SYNE1	chr6	152570296	-	METTL24	chr6	110567463	-
Frame-shit	ENST00000256646	ENST00000369400		TCGA	LD	LUAD	TCGA-55-7281-01A	NOTCH2	chr1	120478095	-	ADAM30	chr1	120437219	-
intron-3CDS	ENST00000602566	ENST00000369400		TCGA	LD	LUAD	TCGA-55-7281-01A	NOTCH2	chr1	120478095	-	ADAM30	chr1	120437219	-
intron-3CDS	ENST00000493703	ENST00000369400		TCGA	LD	LUAD	TCGA-55-7281-01A	NOTCH2	chr1	120478095	-	ADAM30	chr1	120437219	-
5CDS-5UTR	ENST00000320580	ENST00000531293		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000320580	ENST00000305991		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
5CDS-5UTR	ENST00000320580	ENST00000525934		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
intron-5UTR	ENST00000529757	ENST00000531293		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
intron-5UTR	ENST00000529757	ENST00000305991		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
intron-5UTR	ENST00000529757	ENST00000525934		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
intron-5UTR	ENST00000524815	ENST00000531293		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
intron-5UTR	ENST00000524815	ENST00000305991		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
intron-5UTR	ENST00000524815	ENST00000525934		TCGA	LD	LUAD	TCGA-55-7570-01A	PACS1	chr11	65838313	+	SLN	chr11	107578731	-
5UTR-5UTR	ENST00000434513	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000434513	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-intron	ENST00000434513	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000434513	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000361221	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000361221	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-intron	ENST00000361221	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000361221	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000452522	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000452522	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-intron	ENST00000452522	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
5UTR-5UTR	ENST00000452522	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375415	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375415	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-intron	ENST00000375415	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375415	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375420	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375420	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-intron	ENST00000375420	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375420	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000469726	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000469726	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-intron	ENST00000469726	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000469726	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375408	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375408	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-intron	ENST00000375408	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000375408	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000167825	ENST00000294543		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000167825	ENST00000375127		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-intron	ENST00000167825	ENST00000489814		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
intron-5UTR	ENST00000167825	ENST00000375122		TCGA	LD	LUAD	TCGA-55-7574-01A	ARHGEF10L	chr1	17866445	+	TMCO4	chr1	20107259	-
Frame-shit	ENST00000302538	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000302538	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000302538	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000302538	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000302538	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000544583	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000544583	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000544583	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000544583	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000544583	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-3CDS	ENST00000572441	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000574437	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000574437	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000574437	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000574437	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000574437	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000291107	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000291107	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000291107	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000291107	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000291107	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-3CDS	ENST00000543210	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000536794	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
Frame-shit	ENST00000536794	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000536794	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000536794	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
5CDS-intron	ENST00000536794	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-3CDS	ENST00000573895	ENST00000571732		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	LUAD	TCGA-55-7576-01A	ABR	chr17	953290	-	YWHAE	chr17	1257641	-
In-frame	ENST00000367843	ENST00000271417		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367843	ENST00000529387		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367843	ENST00000528703		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367843	ENST00000526687		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367843	ENST00000469934		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367843	ENST00000525740		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367843	ENST00000529071		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
In-frame	ENST00000432587	ENST00000271417		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000432587	ENST00000529387		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000432587	ENST00000528703		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000432587	ENST00000526687		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000432587	ENST00000469934		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000432587	ENST00000525740		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000432587	ENST00000529071		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
In-frame	ENST00000312263	ENST00000271417		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000312263	ENST00000529387		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000312263	ENST00000528703		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000312263	ENST00000526687		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000312263	ENST00000469934		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000312263	ENST00000525740		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000312263	ENST00000529071		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
In-frame	ENST00000367840	ENST00000271417		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367840	ENST00000529387		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367840	ENST00000528703		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367840	ENST00000526687		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367840	ENST00000469934		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367840	ENST00000525740		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
5CDS-intron	ENST00000367840	ENST00000529071		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-3CDS	ENST00000470919	ENST00000271417		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-intron	ENST00000470919	ENST00000529387		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-intron	ENST00000470919	ENST00000528703		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-intron	ENST00000470919	ENST00000526687		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-intron	ENST00000470919	ENST00000469934		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-intron	ENST00000470919	ENST00000525740		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
intron-intron	ENST00000470919	ENST00000529071		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	ILDR2	chr1	166908807	-
Frame-shit	ENST00000367843	ENST00000367833		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
5CDS-intron	ENST00000367843	ENST00000367830		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
Frame-shit	ENST00000432587	ENST00000367833		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
5CDS-intron	ENST00000432587	ENST00000367830		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
Frame-shit	ENST00000312263	ENST00000367833		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
5CDS-intron	ENST00000312263	ENST00000367830		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
Frame-shit	ENST00000367840	ENST00000367833		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
5CDS-intron	ENST00000367840	ENST00000367830		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
intron-3CDS	ENST00000470919	ENST00000367833		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
intron-intron	ENST00000470919	ENST00000367830		TCGA	LD	LUAD	TCGA-55-7576-01A	DCAF6	chr1	167906246	+	TIPRL	chr1	168165785	+
Frame-shit	ENST00000325954	ENST00000202967		TCGA	LD	LUAD	TCGA-55-7576-01A	RNF10	chr12	120998689	+	SIRT4	chr12	120750259	+
5CDS-intron	ENST00000325954	ENST00000537892		TCGA	LD	LUAD	TCGA-55-7576-01A	RNF10	chr12	120998689	+	SIRT4	chr12	120750259	+
Frame-shit	ENST00000413266	ENST00000202967		TCGA	LD	LUAD	TCGA-55-7576-01A	RNF10	chr12	120998689	+	SIRT4	chr12	120750259	+
5CDS-intron	ENST00000413266	ENST00000537892		TCGA	LD	LUAD	TCGA-55-7576-01A	RNF10	chr12	120998689	+	SIRT4	chr12	120750259	+
intron-3CDS	ENST00000542701	ENST00000202967		TCGA	LD	LUAD	TCGA-55-7576-01A	RNF10	chr12	120998689	+	SIRT4	chr12	120750259	+
intron-intron	ENST00000542701	ENST00000537892		TCGA	LD	LUAD	TCGA-55-7576-01A	RNF10	chr12	120998689	+	SIRT4	chr12	120750259	+
In-frame	ENST00000544604	ENST00000332050		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
In-frame	ENST00000544604	ENST00000397938		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
In-frame	ENST00000544604	ENST00000406548		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
In-frame	ENST00000544604	ENST00000331029		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
In-frame	ENST00000544604	ENST00000414183		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5CDS-intron	ENST00000544604	ENST00000333395		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5CDS-intron	ENST00000544604	ENST00000332035		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-3CDS	ENST00000332811	ENST00000332050		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-3CDS	ENST00000332811	ENST00000397938		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-3CDS	ENST00000332811	ENST00000406548		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-3CDS	ENST00000332811	ENST00000331029		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-3CDS	ENST00000332811	ENST00000414183		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-intron	ENST00000332811	ENST00000333395		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5UTR-intron	ENST00000332811	ENST00000332035		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000402174	ENST00000332050		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000402174	ENST00000397938		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000402174	ENST00000406548		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000402174	ENST00000331029		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000402174	ENST00000414183		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-intron	ENST00000402174	ENST00000333395		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-intron	ENST00000402174	ENST00000332035		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000406323	ENST00000332050		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000406323	ENST00000397938		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000406323	ENST00000406548		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000406323	ENST00000331029		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-3CDS	ENST00000406323	ENST00000414183		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-intron	ENST00000406323	ENST00000333395		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
intron-intron	ENST00000406323	ENST00000332035		TCGA	LD	LUAD	TCGA-55-7576-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29692229	+
5CDS-intron	ENST00000445593	ENST00000520381		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000445593	ENST00000262215		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000445593	ENST00000517955		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000445593	ENST00000518230		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521545	ENST00000520381		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521545	ENST00000262215		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521545	ENST00000517955		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521545	ENST00000518230		TCGA	LD	LUAD	TCGA-55-7725-01A	LAPTM4B	chr8	98788336	+	ARFGEF1	chr8	68214701	-
intron-3CDS	ENST00000458258	ENST00000401783		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
intron-3CDS	ENST00000458258	ENST00000374469		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
intron-intron	ENST00000458258	ENST00000467821		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
intron-intron	ENST00000458258	ENST00000302728		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
intron-intron	ENST00000458258	ENST00000374461		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
intron-intron	ENST00000458258	ENST00000297826		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
Frame-shit	ENST00000334318	ENST00000401783		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
Frame-shit	ENST00000334318	ENST00000374469		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000334318	ENST00000467821		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000334318	ENST00000302728		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000334318	ENST00000374461		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000334318	ENST00000297826		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-3CDS	ENST00000374257	ENST00000401783		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-3CDS	ENST00000374257	ENST00000374469		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000374257	ENST00000467821		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000374257	ENST00000302728		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000374257	ENST00000374461		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000374257	ENST00000297826		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
Frame-shit	ENST00000374255	ENST00000401783		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
Frame-shit	ENST00000374255	ENST00000374469		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000374255	ENST00000467821		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000374255	ENST00000302728		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000374255	ENST00000374461		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-intron	ENST00000374255	ENST00000297826		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-3CDS	ENST00000343327	ENST00000401783		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-3CDS	ENST00000343327	ENST00000374469		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000343327	ENST00000467821		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000343327	ENST00000302728		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000343327	ENST00000374461		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000343327	ENST00000297826		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-3CDS	ENST00000487997	ENST00000401783		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-3CDS	ENST00000487997	ENST00000374469		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000487997	ENST00000467821		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000487997	ENST00000302728		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000487997	ENST00000374461		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5UTR-intron	ENST00000487997	ENST00000297826		TCGA	LD	LUAD	TCGA-55-7726-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113139646	-
5CDS-5UTR	ENST00000005260	ENST00000433346		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-3UTR	ENST00000005260	ENST00000449039		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000005260	ENST00000007969		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000005260	ENST00000323702		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000005260	ENST00000443597		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000005260	ENST00000436789		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-intron	ENST00000005260	ENST00000429740		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-5UTR	ENST00000462558	ENST00000433346		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-3UTR	ENST00000462558	ENST00000449039		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000462558	ENST00000007969		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000462558	ENST00000323702		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000462558	ENST00000443597		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000462558	ENST00000436789		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000462558	ENST00000429740		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	LRRC23	chr12	6992868	+
5CDS-3UTR	ENST00000005260	ENST00000412023		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	RPL13P5	chr12	6992868	+
5UTR-3UTR	ENST00000462558	ENST00000412023		TCGA	LD	LUAD	TCGA-55-7815-01A	BAIAP2L1	chr7	97984354	-	RPL13P5	chr12	6992868	+
Frame-shit	ENST00000422113	ENST00000261653		TCGA	LD	LUAD	TCGA-55-7907-01A	TMEM132D	chr12	130387806	-	STX2	chr12	131297576	-
Frame-shit	ENST00000422113	ENST00000392373		TCGA	LD	LUAD	TCGA-55-7907-01A	TMEM132D	chr12	130387806	-	STX2	chr12	131297576	-
intron-3CDS	ENST00000389441	ENST00000261653		TCGA	LD	LUAD	TCGA-55-7907-01A	TMEM132D	chr12	130387806	-	STX2	chr12	131297576	-
intron-3CDS	ENST00000389441	ENST00000392373		TCGA	LD	LUAD	TCGA-55-7907-01A	TMEM132D	chr12	130387806	-	STX2	chr12	131297576	-
Frame-shit	ENST00000304623	ENST00000415930		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000304623	ENST00000356487		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000304623	ENST00000586425		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000359640	ENST00000415930		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000359640	ENST00000356487		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000359640	ENST00000586425		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000511377	ENST00000415930		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000511377	ENST00000356487		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000511377	ENST00000586425		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000458100	ENST00000415930		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000458100	ENST00000356487		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000458100	ENST00000586425		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000503622	ENST00000415930		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000503622	ENST00000356487		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
Frame-shit	ENST00000503622	ENST00000586425		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
5UTR-3CDS	ENST00000495388	ENST00000415930		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
5UTR-3CDS	ENST00000495388	ENST00000356487		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
5UTR-3CDS	ENST00000495388	ENST00000586425		TCGA	LD	LUAD	TCGA-55-7910-01A	CTNND2	chr5	11159688	-	GPI	chr19	34884819	+
5UTR-3CDS	ENST00000491545	ENST00000216218		TCGA	LD	LUAD	TCGA-55-7911-01A	SLC25A17	chr22	41169941	-	ST13	chr22	41246884	-
In-frame	ENST00000435456	ENST00000216218		TCGA	LD	LUAD	TCGA-55-7911-01A	SLC25A17	chr22	41169941	-	ST13	chr22	41246884	-
In-frame	ENST00000402844	ENST00000216218		TCGA	LD	LUAD	TCGA-55-7911-01A	SLC25A17	chr22	41169941	-	ST13	chr22	41246884	-
Frame-shit	ENST00000544408	ENST00000216218		TCGA	LD	LUAD	TCGA-55-7911-01A	SLC25A17	chr22	41169941	-	ST13	chr22	41246884	-
In-frame	ENST00000542412	ENST00000216218		TCGA	LD	LUAD	TCGA-55-7911-01A	SLC25A17	chr22	41169941	-	ST13	chr22	41246884	-
Frame-shit	ENST00000374023	ENST00000607016		TCGA	LD	LUAD	TCGA-55-7913-01B	C6orf106	chr6	34614378	-	NUDT3	chr6	34309749	-
intron-3CDS	ENST00000374026	ENST00000607016		TCGA	LD	LUAD	TCGA-55-7913-01B	C6orf106	chr6	34614378	-	NUDT3	chr6	34309749	-
In-frame	ENST00000374021	ENST00000607016		TCGA	LD	LUAD	TCGA-55-7913-01B	C6orf106	chr6	34614378	-	NUDT3	chr6	34309749	-
In-frame	ENST00000262461	ENST00000261798		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000262461	ENST00000377843		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000262461	ENST00000515435		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000262461	ENST00000504676		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000262461	ENST00000515768		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5CDS-intron	ENST00000262461	ENST00000606719		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5CDS-intron	ENST00000262461	ENST00000606299		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5CDS-intron	ENST00000262461	ENST00000515748		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000343225	ENST00000261798		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000343225	ENST00000377843		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000343225	ENST00000515435		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000343225	ENST00000504676		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
In-frame	ENST00000343225	ENST00000515768		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5CDS-intron	ENST00000343225	ENST00000606719		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5CDS-intron	ENST00000343225	ENST00000606299		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5CDS-intron	ENST00000343225	ENST00000515748		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000507791	ENST00000261798		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000507791	ENST00000377843		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000507791	ENST00000515435		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000507791	ENST00000504676		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-3CDS	ENST00000507791	ENST00000515768		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-intron	ENST00000507791	ENST00000606719		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-intron	ENST00000507791	ENST00000606299		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
intron-intron	ENST00000507791	ENST00000515748		TCGA	LD	LUAD	TCGA-55-7913-01B	SLC12A2	chr5	127420402	+	CSNK1A1	chr5	148899951	-
5UTR-3CDS	ENST00000374037	ENST00000335523		TCGA	LD	LUAD	TCGA-55-7913-01B	SPDEF	chr6	34523706	-	VSTM2B	chr19	30054753	+
5UTR-3CDS	ENST00000544425	ENST00000335523		TCGA	LD	LUAD	TCGA-55-7913-01B	SPDEF	chr6	34523706	-	VSTM2B	chr19	30054753	+
intron-3CDS	ENST00000368395	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000338684	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000438413	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000457295	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000462215	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000368392	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000368393	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000368390	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000368396	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000343256	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000368398	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000368389	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000342482	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
intron-3CDS	ENST00000337604	ENST00000390547		TCGA	LD	LUAD	TCGA-55-7914-01A	MUC1	chr1	155160887	-	IGHA1	chr14	106174472	-
5CDS-5UTR	ENST00000397128	ENST00000414318		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000397128	ENST00000253692		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000397128	ENST00000429383		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000397128	ENST00000446818		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000397128	ENST00000429924		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000354209	ENST00000414318		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000354209	ENST00000253692		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000354209	ENST00000429383		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000354209	ENST00000446818		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000354209	ENST00000429924		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000296800	ENST00000414318		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000296800	ENST00000253692		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000296800	ENST00000429383		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000296800	ENST00000446818		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
5CDS-5UTR	ENST00000296800	ENST00000429924		TCGA	LD	LUAD	TCGA-55-7994-01A	PRKAA1	chr5	40798165	-	TBC1D5	chr3	17255862	-
intron-3CDS	ENST00000408915	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
intron-intron	ENST00000408915	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
intron-intron	ENST00000408915	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
intron-5UTR	ENST00000408915	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000402589	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000402589	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000402589	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000402589	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000339686	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000339686	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000339686	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000339686	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000436012	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000436012	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000436012	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000436012	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000414866	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000414866	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000414866	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000414866	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000480502	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000480502	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000480502	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000480502	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000467637	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000467637	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000467637	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000467637	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000429837	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000429837	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000429837	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000429837	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000419602	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000419602	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000419602	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000419602	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-3CDS	ENST00000462126	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000462126	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000462126	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-5UTR	ENST00000462126	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000443640	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000443640	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000443640	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000443640	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-3CDS	ENST00000472252	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000472252	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000472252	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-5UTR	ENST00000472252	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-3CDS	ENST00000492341	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000492341	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000492341	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-5UTR	ENST00000492341	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000602781	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000602781	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000602781	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000602781	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-3CDS	ENST00000474928	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000474928	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000474928	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-5UTR	ENST00000474928	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000488892	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000488892	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000488892	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000488892	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-3CDS	ENST00000461300	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000461300	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-intron	ENST00000461300	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5UTR-5UTR	ENST00000461300	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000447113	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000447113	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000447113	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000447113	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000392206	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000392206	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000392206	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000392206	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000440396	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000440396	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000440396	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000440396	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000458071	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000458071	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000458071	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000458071	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000418261	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000418261	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000418261	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000418261	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000424570	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000424570	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000424570	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000424570	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
In-frame	ENST00000451297	ENST00000252891		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000451297	ENST00000598779		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000451297	ENST00000540131		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-5UTR	ENST00000451297	ENST00000599594		TCGA	LD	LUAD	TCGA-55-7995-01A	DMKN	chr19	36001086	-	NUMBL	chr19	41192900	-
5CDS-intron	ENST00000402738	ENST00000509081		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000402738	ENST00000264400		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000402738	ENST00000335927		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000402738	ENST00000436139		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000402738	ENST00000514889		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000407637	ENST00000509081		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000407637	ENST00000264400		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000407637	ENST00000335927		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000407637	ENST00000436139		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000407637	ENST00000514889		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000601319	ENST00000509081		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000601319	ENST00000264400		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000601319	ENST00000335927		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000601319	ENST00000436139		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000601319	ENST00000514889		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000264345	ENST00000509081		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000264345	ENST00000264400		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000264345	ENST00000335927		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000264345	ENST00000436139		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000264345	ENST00000514889		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000543130	ENST00000509081		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000543130	ENST00000264400		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000543130	ENST00000335927		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000543130	ENST00000436139		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
intron-intron	ENST00000543130	ENST00000514889		TCGA	LD	LUAD	TCGA-55-7995-01A	HERC3	chr4	89527200	+	RASGEF1B	chr4	82524076	-
5CDS-intron	ENST00000544547	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
5CDS-5UTR	ENST00000544547	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
5CDS-5UTR	ENST00000544547	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
5CDS-intron	ENST00000544547	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
5CDS-intron	ENST00000544547	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
5CDS-5UTR	ENST00000544547	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000332345	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000332345	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000332345	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000332345	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000332345	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000332345	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000393310	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000393310	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000393310	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000393310	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000393310	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000393310	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000410093	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000410093	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000410093	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000410093	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000410093	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000410093	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000409441	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000409441	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000409441	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000409441	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000409441	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000409441	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000338045	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000338045	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000338045	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000338045	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000338045	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000338045	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000462817	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000462817	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000462817	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000462817	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000462817	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000462817	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000542845	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000542845	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000542845	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000542845	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000542845	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000542845	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000393314	ENST00000602725		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000393314	ENST00000344035		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000393314	ENST00000356536		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000393314	ENST00000457805		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000393314	ENST00000470404		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-5UTR	ENST00000393314	ENST00000526960		TCGA	LD	LUAD	TCGA-55-7995-01A	LIMS1	chr2	109151050	+	PTP4A2	chr1	32385259	-
intron-3CDS	ENST00000541156	ENST00000396231		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000541156	ENST00000262726		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000541156	ENST00000358439		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000541156	ENST00000356087		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000541156	ENST00000461800		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000357137	ENST00000396231		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000357137	ENST00000262726		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000357137	ENST00000358439		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000357137	ENST00000356087		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000357137	ENST00000461800		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000544094	ENST00000396231		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000544094	ENST00000262726		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000544094	ENST00000358439		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000544094	ENST00000356087		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000544094	ENST00000461800		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000414396	ENST00000396231		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000414396	ENST00000262726		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000414396	ENST00000358439		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000414396	ENST00000356087		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000414396	ENST00000461800		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000482652	ENST00000396231		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000482652	ENST00000262726		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000482652	ENST00000358439		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000482652	ENST00000356087		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-intron	ENST00000482652	ENST00000461800		TCGA	LD	LUAD	TCGA-55-7995-01A	XPNPEP3	chr22	41266143	+	EFCAB6	chr22	44079735	-
intron-3CDS	ENST00000495707	ENST00000252071		TCGA	LD	LUAD	TCGA-55-7995-01A	XRCC2	chr7	152373126	-	ACTR3C	chr7	149946143	-
intron-3CDS	ENST00000495707	ENST00000539352		TCGA	LD	LUAD	TCGA-55-7995-01A	XRCC2	chr7	152373126	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000359321	ENST00000252071		TCGA	LD	LUAD	TCGA-55-7995-01A	XRCC2	chr7	152373126	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000359321	ENST00000539352		TCGA	LD	LUAD	TCGA-55-7995-01A	XRCC2	chr7	152373126	-	ACTR3C	chr7	149946143	-
In-frame	ENST00000550760	ENST00000354725		TCGA	LD	LUAD	TCGA-55-7995-01A	ZNF727	chr7	63506002	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000550760	ENST00000467238		TCGA	LD	LUAD	TCGA-55-7995-01A	ZNF727	chr7	63506002	+	SND1	chr7	127714554	+
3UTR-3CDS	ENST00000558351	ENST00000423169		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
3UTR-3CDS	ENST00000558351	ENST00000267868		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
3UTR-intron	ENST00000558351	ENST00000557850		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
3UTR-intron	ENST00000558351	ENST00000532743		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
3UTR-intron	ENST00000558351	ENST00000382643		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
3UTR-intron	ENST00000558351	ENST00000530766		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
In-frame	ENST00000334660	ENST00000423169		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
In-frame	ENST00000334660	ENST00000267868		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000334660	ENST00000557850		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000334660	ENST00000532743		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000334660	ENST00000382643		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000334660	ENST00000530766		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
In-frame	ENST00000560397	ENST00000423169		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
In-frame	ENST00000560397	ENST00000267868		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000560397	ENST00000557850		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000560397	ENST00000532743		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000560397	ENST00000382643		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
5CDS-intron	ENST00000560397	ENST00000530766		TCGA	LD	LUAD	TCGA-55-8085-01A	CHP1	chr15	41562816	+	RAD51	chr15	41011003	+
In-frame	ENST00000243903	ENST00000371471		TCGA	LD	LUAD	TCGA-55-8087-01A	ACTR5	chr20	37395020	+	ZNF217	chr20	52188392	-
Frame-shit	ENST00000243903	ENST00000302342		TCGA	LD	LUAD	TCGA-55-8087-01A	ACTR5	chr20	37395020	+	ZNF217	chr20	52188392	-
5CDS-intron	ENST00000243903	ENST00000540425		TCGA	LD	LUAD	TCGA-55-8087-01A	ACTR5	chr20	37395020	+	ZNF217	chr20	52188392	-
Frame-shit	ENST00000406890	ENST00000403058		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
Frame-shit	ENST00000406890	ENST00000518318		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5CDS-3UTR	ENST00000406890	ENST00000517348		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000406890	ENST00000559001		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000406890	ENST00000464276		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
Frame-shit	ENST00000404369	ENST00000403058		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
Frame-shit	ENST00000404369	ENST00000518318		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5CDS-3UTR	ENST00000404369	ENST00000517348		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000404369	ENST00000559001		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5CDS-5UTR	ENST00000404369	ENST00000464276		TCGA	LD	LUAD	TCGA-55-8089-01A	STEAP1B	chr7	22532184	-	POU6F2	chr7	39125460	+
5UTR-3CDS	ENST00000311160	ENST00000275605		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
5UTR-3CDS	ENST00000311160	ENST00000395471		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
5UTR-intron	ENST00000311160	ENST00000459834		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000355730	ENST00000275605		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000355730	ENST00000395471		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-intron	ENST00000355730	ENST00000459834		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000398879	ENST00000275605		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000398879	ENST00000395471		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-intron	ENST00000398879	ENST00000459834		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000442536	ENST00000275605		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000442536	ENST00000395471		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-intron	ENST00000442536	ENST00000459834		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000458317	ENST00000275605		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-3CDS	ENST00000458317	ENST00000395471		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
intron-intron	ENST00000458317	ENST00000459834		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
5UTR-3CDS	ENST00000474346	ENST00000275605		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
5UTR-3CDS	ENST00000474346	ENST00000395471		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
5UTR-intron	ENST00000474346	ENST00000459834		TCGA	LD	LUAD	TCGA-55-8089-01A	TNS3	chr7	47621649	-	PSPH	chr7	56087427	-
5CDS-5UTR	ENST00000285279	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5CDS-intron	ENST00000285279	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5CDS-intron	ENST00000285279	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5CDS-intron	ENST00000285279	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000433959	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000433959	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000433959	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000433959	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000545390	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000545390	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000545390	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000545390	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000428648	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000428648	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000428648	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000428648	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000428097	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000428097	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000428097	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000428097	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000418904	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000418904	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000418904	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000418904	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000454227	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000454227	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000454227	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000454227	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000453256	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000453256	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000453256	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000453256	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5UTR-5UTR	ENST00000427700	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5UTR-intron	ENST00000427700	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5UTR-intron	ENST00000427700	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
5UTR-intron	ENST00000427700	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-5UTR	ENST00000471168	ENST00000344041		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000471168	ENST00000475788		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000471168	ENST00000405243		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
intron-intron	ENST00000471168	ENST00000401957		TCGA	LD	LUAD	TCGA-55-8089-01A	VOPP1	chr7	55639964	-	RAPGEF5	chr7	22357656	-
In-frame	ENST00000257626	ENST00000288670		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000257626	ENST00000475377		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000257626	ENST00000497192		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-3CDS	ENST00000441833	ENST00000288670		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-intron	ENST00000441833	ENST00000475377		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-intron	ENST00000441833	ENST00000497192		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-3CDS	ENST00000440473	ENST00000288670		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-intron	ENST00000440473	ENST00000475377		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-intron	ENST00000440473	ENST00000497192		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-3CDS	ENST00000430584	ENST00000288670		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-intron	ENST00000430584	ENST00000475377		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
intron-intron	ENST00000430584	ENST00000497192		TCGA	LD	LUAD	TCGA-55-8090-01A	GSAP	chr7	76978668	-	FMNL2	chr2	153378457	+
In-frame	ENST00000283249	ENST00000519643		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000283249	ENST00000311601		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5CDS-intron	ENST00000283249	ENST00000523651		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5UTR-3CDS	ENST00000485635	ENST00000519643		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5UTR-3CDS	ENST00000485635	ENST00000311601		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5UTR-intron	ENST00000485635	ENST00000523651		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000428609	ENST00000519643		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000428609	ENST00000311601		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5CDS-intron	ENST00000428609	ENST00000523651		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000409967	ENST00000519643		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000409967	ENST00000311601		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5CDS-intron	ENST00000409967	ENST00000523651		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
Frame-shit	ENST00000409872	ENST00000519643		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
Frame-shit	ENST00000409872	ENST00000311601		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
5CDS-intron	ENST00000409872	ENST00000523651		TCGA	LD	LUAD	TCGA-55-8091-01A	ITGB6	chr2	161025723	-	SH3PXD2B	chr5	171849500	-
In-frame	ENST00000548411	ENST00000377026		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000548411	ENST00000398425		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000548411	ENST00000432543		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
5CDS-5UTR	ENST00000548411	ENST00000472855		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000281474	ENST00000377026		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000281474	ENST00000398425		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000281474	ENST00000432543		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
5CDS-5UTR	ENST00000281474	ENST00000472855		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
Frame-shit	ENST00000551848	ENST00000377026		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
Frame-shit	ENST00000551848	ENST00000398425		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
Frame-shit	ENST00000551848	ENST00000432543		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
5CDS-5UTR	ENST00000551848	ENST00000472855		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000550207	ENST00000377026		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000550207	ENST00000398425		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000550207	ENST00000432543		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
5CDS-5UTR	ENST00000550207	ENST00000472855		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000551086	ENST00000377026		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000551086	ENST00000398425		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000551086	ENST00000432543		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
5CDS-5UTR	ENST00000551086	ENST00000472855		TCGA	LD	LUAD	TCGA-55-8094-01A	BICD1	chr12	32260478	+	NAPB	chr20	23361954	-
In-frame	ENST00000339082	ENST00000262887		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
In-frame	ENST00000339082	ENST00000543982		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
intron-3CDS	ENST00000601723	ENST00000262887		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
intron-3CDS	ENST00000601723	ENST00000543982		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
In-frame	ENST00000340093	ENST00000262887		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
In-frame	ENST00000340093	ENST00000543982		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
In-frame	ENST00000221264	ENST00000262887		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
In-frame	ENST00000221264	ENST00000543982		TCGA	LD	LUAD	TCGA-55-8094-01A	PLAUR	chr19	44156377	-	XRCC1	chr19	44050258	-
5CDS-intron	ENST00000437766	ENST00000222214		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000437766	ENST00000591470		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000437766	ENST00000457854		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000437766	ENST00000422947		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-3UTR	ENST00000437766	ENST00000588242		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000357720	ENST00000222214		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000357720	ENST00000591470		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000357720	ENST00000457854		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000357720	ENST00000422947		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-3UTR	ENST00000357720	ENST00000588242		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000221504	ENST00000222214		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000221504	ENST00000591470		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000221504	ENST00000457854		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000221504	ENST00000422947		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-3UTR	ENST00000221504	ENST00000588242		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000592062	ENST00000222214		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000592062	ENST00000591470		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000592062	ENST00000457854		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-intron	ENST00000592062	ENST00000422947		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
5CDS-3UTR	ENST00000592062	ENST00000588242		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
intron-intron	ENST00000592892	ENST00000222214		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
intron-intron	ENST00000592892	ENST00000591470		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
intron-intron	ENST00000592892	ENST00000457854		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
intron-intron	ENST00000592892	ENST00000422947		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
intron-3UTR	ENST00000592892	ENST00000588242		TCGA	LD	LUAD	TCGA-55-8094-01A	TRMT1	chr19	13226093	-	GCDH	chr19	13011048	+
Frame-shit	ENST00000013125	ENST00000245441		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
Frame-shit	ENST00000013125	ENST00000389868		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
Frame-shit	ENST00000013125	ENST00000530997		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
Frame-shit	ENST00000013125	ENST00000382043		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
Frame-shit	ENST00000013125	ENST00000382041		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
Frame-shit	ENST00000013125	ENST00000324330		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
Frame-shit	ENST00000013125	ENST00000453196		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
5CDS-intron	ENST00000013125	ENST00000486200		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000245441		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000389868		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000530997		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000382043		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000382041		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000324330		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-3CDS	ENST00000557578	ENST00000453196		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
intron-intron	ENST00000557578	ENST00000486200		TCGA	LD	LUAD	TCGA-55-8096-01A	MAP4K5	chr14	50930770	-	NIN	chr14	51219451	-
3UTR-3CDS	ENST00000248594	ENST00000304718		TCGA	LD	LUAD	TCGA-55-8096-01A	PTPN12	chr7	77268641	+	GGNBP2	chr17	34923502	+
3UTR-intron	ENST00000248594	ENST00000485685		TCGA	LD	LUAD	TCGA-55-8096-01A	PTPN12	chr7	77268641	+	GGNBP2	chr17	34923502	+
intron-3CDS	ENST00000415482	ENST00000304718		TCGA	LD	LUAD	TCGA-55-8096-01A	PTPN12	chr7	77268641	+	GGNBP2	chr17	34923502	+
intron-intron	ENST00000415482	ENST00000485685		TCGA	LD	LUAD	TCGA-55-8096-01A	PTPN12	chr7	77268641	+	GGNBP2	chr17	34923502	+
3UTR-3CDS	ENST00000435495	ENST00000304718		TCGA	LD	LUAD	TCGA-55-8096-01A	PTPN12	chr7	77268641	+	GGNBP2	chr17	34923502	+
3UTR-intron	ENST00000435495	ENST00000485685		TCGA	LD	LUAD	TCGA-55-8096-01A	PTPN12	chr7	77268641	+	GGNBP2	chr17	34923502	+
5UTR-3CDS	ENST00000373233	ENST00000371497		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000373233	ENST00000603338		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000373233	ENST00000329613		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000309279	ENST00000371497		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000309279	ENST00000603338		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000309279	ENST00000329613		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000373222	ENST00000371497		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000373222	ENST00000603338		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
5UTR-3CDS	ENST00000373222	ENST00000329613		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
intron-3CDS	ENST00000480022	ENST00000371497		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
intron-3CDS	ENST00000480022	ENST00000603338		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
intron-3CDS	ENST00000480022	ENST00000329613		TCGA	LD	LUAD	TCGA-55-8097-01A	CHD6	chr20	40246979	-	TSHZ2	chr20	51870038	+
In-frame	ENST00000216951	ENST00000373448		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
In-frame	ENST00000216951	ENST00000373447		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
In-frame	ENST00000216951	ENST00000449821		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
5CDS-intron	ENST00000216951	ENST00000487362		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
Frame-shit	ENST00000541098	ENST00000373448		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
Frame-shit	ENST00000541098	ENST00000373447		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
Frame-shit	ENST00000541098	ENST00000449821		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
5CDS-intron	ENST00000541098	ENST00000487362		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
intron-3CDS	ENST00000451957	ENST00000373448		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
intron-3CDS	ENST00000451957	ENST00000373447		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
intron-3CDS	ENST00000451957	ENST00000449821		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
intron-intron	ENST00000451957	ENST00000487362		TCGA	LD	LUAD	TCGA-55-8097-01A	GSS	chr20	33529516	-	TTI1	chr20	36627730	-
Frame-shit	ENST00000358791	ENST00000374012		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000358791	ENST00000439301		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000358791	ENST00000481202		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000262591	ENST00000374012		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000262591	ENST00000439301		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000262591	ENST00000481202		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
Frame-shit	ENST00000371608	ENST00000374012		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000371608	ENST00000439301		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000371608	ENST00000481202		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
Frame-shit	ENST00000609336	ENST00000374012		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000609336	ENST00000439301		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000609336	ENST00000481202		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000485049	ENST00000374012		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000485049	ENST00000439301		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000485049	ENST00000481202		TCGA	LD	LUAD	TCGA-55-8206-01A	BCAS4	chr20	49458437	+	PHF20	chr20	34501171	+
5CDS-3UTR	ENST00000473997	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000473997	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000473997	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000473997	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000473997	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000346416	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000346416	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000346416	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000346416	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000346416	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000339269	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000339269	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000339269	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000339269	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000339269	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000357886	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000357886	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000357886	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000357886	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000357886	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000544843	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000544843	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000544843	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-3UTR	ENST00000544843	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5CDS-intron	ENST00000544843	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-3UTR	ENST00000477105	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-3UTR	ENST00000477105	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-3UTR	ENST00000477105	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-3UTR	ENST00000477105	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-intron	ENST00000477105	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CDK5RAP1	chr20	31979949	-	GNAS	chr20	57478582	+
5UTR-3UTR	ENST00000352393	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000352393	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000352393	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000352393	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000352393	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000317677	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000317677	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000317677	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000317677	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000317677	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397445	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397445	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397445	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397445	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397445	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000317619	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000317619	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000317619	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000317619	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000317619	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397443	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397443	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397443	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000397443	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000397443	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397446	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397446	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397446	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397446	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397446	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397442	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397442	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397442	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000397442	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000397442	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000475146	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000475146	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000475146	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-3UTR	ENST00000475146	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
intron-intron	ENST00000475146	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	CPNE1	chr20	34252682	-	GNAS	chr20	57478586	+
5CDS-5UTR	ENST00000246069	ENST00000357236		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5CDS-5UTR	ENST00000246069	ENST00000329494		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5CDS-5UTR	ENST00000246069	ENST00000262547		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5CDS-intron	ENST00000246069	ENST00000487128		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5CDS-intron	ENST00000246069	ENST00000358866		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5UTR-5UTR	ENST00000474024	ENST00000357236		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5UTR-5UTR	ENST00000474024	ENST00000329494		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5UTR-5UTR	ENST00000474024	ENST00000262547		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5UTR-intron	ENST00000474024	ENST00000487128		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5UTR-intron	ENST00000474024	ENST00000358866		TCGA	LD	LUAD	TCGA-55-8206-01A	DSTN	chr20	17550856	+	DZANK1	chr20	18436005	-
5CDS-3UTR	ENST00000357236	ENST00000377452		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-intron	ENST00000357236	ENST00000494921		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-3UTR	ENST00000329494	ENST00000377452		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-intron	ENST00000329494	ENST00000494921		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-3UTR	ENST00000262547	ENST00000377452		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-intron	ENST00000262547	ENST00000494921		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5UTR-3UTR	ENST00000487128	ENST00000377452		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5UTR-intron	ENST00000487128	ENST00000494921		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-3UTR	ENST00000358866	ENST00000377452		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-intron	ENST00000358866	ENST00000494921		TCGA	LD	LUAD	TCGA-55-8206-01A	DZANK1	chr20	18429628	-	DTD1	chr20	18744004	+
5CDS-3UTR	ENST00000374012	ENST00000371743		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000374012	ENST00000450535		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000374012	ENST00000441722		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000374012	ENST00000417721		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000374012	ENST00000458653		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000374012	ENST00000326677		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000374012	ENST00000428008		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000371743		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000450535		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000441722		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000417721		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000458653		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000326677		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5CDS-3UTR	ENST00000439301	ENST00000428008		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000371743		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000450535		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000441722		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000417721		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000458653		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000326677		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
3UTR-3UTR	ENST00000481202	ENST00000428008		TCGA	LD	LUAD	TCGA-55-8206-01A	PHF20	chr20	34389527	+	ZFAS1	chr20	47905582	+
5UTR-3UTR	ENST00000374114	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374114	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374114	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374114	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374114	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000359646	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000359646	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000359646	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000359646	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000359646	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374104	ENST00000313949		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000371098		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374104	ENST00000371075		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374104	ENST00000371100		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000371099		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000371102		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-3UTR	ENST00000374104	ENST00000464624		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000306120		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000371095		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000371085		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000354359		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000265620		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000306090		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5UTR-intron	ENST00000374104	ENST00000371081		TCGA	LD	LUAD	TCGA-55-8206-01A	RBM12	chr20	34252682	-	GNAS	chr20	57478586	+
5CDS-5UTR	ENST00000293842	ENST00000261811		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-intron	ENST00000293842	ENST00000509789		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-5UTR	ENST00000584164	ENST00000261811		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-intron	ENST00000584164	ENST00000509789		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-5UTR	ENST00000582556	ENST00000261811		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-intron	ENST00000582556	ENST00000509789		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-5UTR	ENST00000583011	ENST00000261811		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-intron	ENST00000583011	ENST00000509789		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
intron-5UTR	ENST00000585176	ENST00000261811		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
intron-intron	ENST00000585176	ENST00000509789		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-5UTR	ENST00000578812	ENST00000261811		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
5CDS-intron	ENST00000578812	ENST00000509789		TCGA	LD	LUAD	TCGA-55-8207-01A	RPL26	chr17	8285461	-	CYSTM1	chr5	139574031	+
intron-5UTR	ENST00000343023	ENST00000496728		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
intron-5UTR	ENST00000343023	ENST00000300181		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
intron-5UTR	ENST00000343023	ENST00000393991		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000354230	ENST00000496728		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000354230	ENST00000300181		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000354230	ENST00000393991		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000303887	ENST00000496728		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000303887	ENST00000300181		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000303887	ENST00000393991		TCGA	LD	LUAD	TCGA-55-8301-01A	MCM7	chr7	99693397	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000409792	ENST00000460241		TCGA	LD	LUAD	TCGA-55-8301-01A	SETD2	chr3	47205344	-	PRSS50	chr3	46761493	-
5CDS-intron	ENST00000409792	ENST00000315170		TCGA	LD	LUAD	TCGA-55-8301-01A	SETD2	chr3	47205344	-	PRSS50	chr3	46761493	-
intron-5UTR	ENST00000492397	ENST00000460241		TCGA	LD	LUAD	TCGA-55-8301-01A	SETD2	chr3	47205344	-	PRSS50	chr3	46761493	-
intron-intron	ENST00000492397	ENST00000315170		TCGA	LD	LUAD	TCGA-55-8301-01A	SETD2	chr3	47205344	-	PRSS50	chr3	46761493	-
In-frame	ENST00000318562	ENST00000597505		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000318562	ENST00000406071		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000318562	ENST00000339794		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000318562	ENST00000437348		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000318562	ENST00000452803		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
In-frame	ENST00000533256	ENST00000597505		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000533256	ENST00000406071		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000533256	ENST00000339794		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000533256	ENST00000437348		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000533256	ENST00000452803		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
In-frame	ENST00000530636	ENST00000597505		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000530636	ENST00000406071		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000530636	ENST00000339794		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000530636	ENST00000437348		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000530636	ENST00000452803		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
In-frame	ENST00000526198	ENST00000597505		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000526198	ENST00000406071		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000526198	ENST00000339794		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000526198	ENST00000437348		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-intron	ENST00000526198	ENST00000452803		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
intron-3CDS	ENST00000534449	ENST00000597505		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
intron-intron	ENST00000534449	ENST00000406071		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
intron-intron	ENST00000534449	ENST00000339794		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
intron-intron	ENST00000534449	ENST00000437348		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
intron-intron	ENST00000534449	ENST00000452803		TCGA	LD	LUAD	TCGA-55-8505-01A	EPS8L2	chr11	710486	+	DCDC1	chr11	31159331	-
5CDS-5UTR	ENST00000415061	ENST00000412770		TCGA	LD	LUAD	TCGA-55-8505-01A	RDH13	chr19	55568021	-	PPP6R1	chr19	55758477	-
5CDS-5UTR	ENST00000415061	ENST00000587283		TCGA	LD	LUAD	TCGA-55-8505-01A	RDH13	chr19	55568021	-	PPP6R1	chr19	55758477	-
5CDS-5UTR	ENST00000396247	ENST00000412770		TCGA	LD	LUAD	TCGA-55-8505-01A	RDH13	chr19	55568021	-	PPP6R1	chr19	55758477	-
5CDS-5UTR	ENST00000396247	ENST00000587283		TCGA	LD	LUAD	TCGA-55-8505-01A	RDH13	chr19	55568021	-	PPP6R1	chr19	55758477	-
intron-5UTR	ENST00000592423	ENST00000412770		TCGA	LD	LUAD	TCGA-55-8505-01A	RDH13	chr19	55568021	-	PPP6R1	chr19	55758477	-
intron-5UTR	ENST00000592423	ENST00000587283		TCGA	LD	LUAD	TCGA-55-8505-01A	RDH13	chr19	55568021	-	PPP6R1	chr19	55758477	-
In-frame	ENST00000318083	ENST00000201586		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000318083	ENST00000323090		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
5CDS-3UTR	ENST00000318083	ENST00000594274		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000356751	ENST00000201586		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000356751	ENST00000323090		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
5CDS-3UTR	ENST00000356751	ENST00000594274		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000594582	ENST00000201586		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000594582	ENST00000323090		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
5CDS-3UTR	ENST00000594582	ENST00000594274		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000377367	ENST00000201586		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000377367	ENST00000323090		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
5CDS-3UTR	ENST00000377367	ENST00000594274		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000419611	ENST00000201586		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
In-frame	ENST00000419611	ENST00000323090		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
5CDS-3UTR	ENST00000419611	ENST00000594274		TCGA	LD	LUAD	TCGA-55-8506-01A	MAMSTR	chr19	49216973	-	SULT2B1	chr19	49102392	+
Frame-shit	ENST00000372715	ENST00000291900		TCGA	LD	LUAD	TCGA-55-8506-01A	WDR34	chr9	131418820	-	ZER1	chr9	131495807	-
5CDS-intron	ENST00000372715	ENST00000494461		TCGA	LD	LUAD	TCGA-55-8506-01A	WDR34	chr9	131418820	-	ZER1	chr9	131495807	-
intron-3CDS	ENST00000483181	ENST00000291900		TCGA	LD	LUAD	TCGA-55-8506-01A	WDR34	chr9	131418820	-	ZER1	chr9	131495807	-
intron-intron	ENST00000483181	ENST00000494461		TCGA	LD	LUAD	TCGA-55-8506-01A	WDR34	chr9	131418820	-	ZER1	chr9	131495807	-
Frame-shit	ENST00000361157	ENST00000374409		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-intron	ENST00000361157	ENST00000440416		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-intron	ENST00000361157	ENST00000003583		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-5UTR	ENST00000361157	ENST00000468303		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-5UTR	ENST00000361157	ENST00000337248		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
Frame-shit	ENST00000339145	ENST00000374409		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-intron	ENST00000339145	ENST00000440416		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-intron	ENST00000339145	ENST00000003583		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-5UTR	ENST00000339145	ENST00000468303		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-5UTR	ENST00000339145	ENST00000337248		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
Frame-shit	ENST00000362020	ENST00000374409		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-intron	ENST00000362020	ENST00000440416		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-intron	ENST00000362020	ENST00000003583		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-5UTR	ENST00000362020	ENST00000468303		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
5CDS-5UTR	ENST00000362020	ENST00000337248		TCGA	LD	LUAD	TCGA-55-8507-01A	IFI6	chr1	27994737	-	STPG1	chr1	24718169	-
Frame-shit	ENST00000389032	ENST00000551456		TCGA	LD	LUAD	TCGA-55-8507-01A	STK38L	chr12	27472356	+	TMPRSS12	chr12	51237625	+
Frame-shit	ENST00000389032	ENST00000398458		TCGA	LD	LUAD	TCGA-55-8507-01A	STK38L	chr12	27472356	+	TMPRSS12	chr12	51237625	+
Frame-shit	ENST00000539577	ENST00000551456		TCGA	LD	LUAD	TCGA-55-8507-01A	STK38L	chr12	27472356	+	TMPRSS12	chr12	51237625	+
Frame-shit	ENST00000539577	ENST00000398458		TCGA	LD	LUAD	TCGA-55-8507-01A	STK38L	chr12	27472356	+	TMPRSS12	chr12	51237625	+
Frame-shit	ENST00000580974	ENST00000488476		TCGA	LD	LUAD	TCGA-55-8508-01A	PITPNC1	chr17	65548456	+	IGHJ5	chr14	106330064	-
Frame-shit	ENST00000299954	ENST00000488476		TCGA	LD	LUAD	TCGA-55-8508-01A	PITPNC1	chr17	65548456	+	IGHJ5	chr14	106330064	-
Frame-shit	ENST00000335257	ENST00000488476		TCGA	LD	LUAD	TCGA-55-8508-01A	PITPNC1	chr17	65548456	+	IGHJ5	chr14	106330064	-
Frame-shit	ENST00000581322	ENST00000488476		TCGA	LD	LUAD	TCGA-55-8508-01A	PITPNC1	chr17	65548456	+	IGHJ5	chr14	106330064	-
Frame-shit	ENST00000525364	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000525364	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000525364	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000525364	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000270176	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000270176	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000270176	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000270176	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000420247	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000420247	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000420247	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000420247	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000533862	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000533862	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000533862	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000533862	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000279270	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000279270	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000279270	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000279270	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000524944	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000524944	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000524944	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000524944	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000527009	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527009	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527009	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000527009	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
intron-3CDS	ENST00000534462	ENST00000317568		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000534462	ENST00000531296		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000534462	ENST00000355991		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000534462	ENST00000416776		TCGA	LD	LUAD	TCGA-55-8510-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000264930	ENST00000522356		TCGA	LD	LUAD	TCGA-55-8510-01A	SLC12A7	chr5	1073748	-	ZDHHC11B	chr5	745413	-
5CDS-intron	ENST00000264930	ENST00000508859		TCGA	LD	LUAD	TCGA-55-8510-01A	SLC12A7	chr5	1073748	-	ZDHHC11B	chr5	745413	-
5CDS-intron	ENST00000264930	ENST00000382776		TCGA	LD	LUAD	TCGA-55-8510-01A	SLC12A7	chr5	1073748	-	ZDHHC11B	chr5	745413	-
3UTR-3CDS	ENST00000494318	ENST00000537855		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-3CDS	ENST00000494318	ENST00000379096		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-3CDS	ENST00000494318	ENST00000518937		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-5UTR	ENST00000494318	ENST00000519303		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-5UTR	ENST00000494318	ENST00000517427		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-5UTR	ENST00000494318	ENST00000520527		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-5UTR	ENST00000494318	ENST00000448733		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-5UTR	ENST00000494318	ENST00000379097		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
3UTR-intron	ENST00000494318	ENST00000523395		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-3CDS	ENST00000354370	ENST00000537855		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-3CDS	ENST00000354370	ENST00000379096		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-3CDS	ENST00000354370	ENST00000518937		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000354370	ENST00000519303		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000354370	ENST00000517427		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000354370	ENST00000520527		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000354370	ENST00000448733		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000354370	ENST00000379097		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-intron	ENST00000354370	ENST00000523395		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-3CDS	ENST00000396423	ENST00000537855		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-3CDS	ENST00000396423	ENST00000379096		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-3CDS	ENST00000396423	ENST00000518937		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000396423	ENST00000519303		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000396423	ENST00000517427		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000396423	ENST00000520527		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000396423	ENST00000448733		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-5UTR	ENST00000396423	ENST00000379097		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
intron-intron	ENST00000396423	ENST00000523395		TCGA	LD	LUAD	TCGA-55-8511-01A	HNF4G	chr8	76320199	+	TPD52	chr8	80976828	-
5CDS-intron	ENST00000283351	ENST00000431264		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000283351	ENST00000424526		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000283351	ENST00000400483		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000283351	ENST00000269218		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000283351	ENST00000580732		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000283351	ENST00000578368		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582539	ENST00000431264		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582539	ENST00000424526		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582539	ENST00000400483		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582539	ENST00000269218		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582539	ENST00000580732		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582539	ENST00000578368		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582513	ENST00000431264		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582513	ENST00000424526		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582513	ENST00000400483		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582513	ENST00000269218		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582513	ENST00000580732		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
5CDS-intron	ENST00000582513	ENST00000578368		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
intron-intron	ENST00000584876	ENST00000431264		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
intron-intron	ENST00000584876	ENST00000424526		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
intron-intron	ENST00000584876	ENST00000400483		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
intron-intron	ENST00000584876	ENST00000269218		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
intron-intron	ENST00000584876	ENST00000580732		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
intron-intron	ENST00000584876	ENST00000578368		TCGA	LD	LUAD	TCGA-55-8511-01A	TRAPPC8	chr18	29470698	-	GREB1L	chr18	19014908	+
In-frame	ENST00000523764	ENST00000290974		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
In-frame	ENST00000523764	ENST00000511071		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
In-frame	ENST00000523764	ENST00000515312		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000523764	ENST00000515169		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000523764	ENST00000509171		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000523764	ENST00000503000		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-5UTR	ENST00000523764	ENST00000508471		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000523764	ENST00000505421		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
In-frame	ENST00000521508	ENST00000290974		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
In-frame	ENST00000521508	ENST00000511071		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
In-frame	ENST00000521508	ENST00000515312		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000521508	ENST00000515169		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000521508	ENST00000509171		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000521508	ENST00000503000		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-5UTR	ENST00000521508	ENST00000508471		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
5CDS-intron	ENST00000521508	ENST00000505421		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-3CDS	ENST00000519151	ENST00000290974		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-3CDS	ENST00000519151	ENST00000511071		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-3CDS	ENST00000519151	ENST00000515312		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-intron	ENST00000519151	ENST00000515169		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-intron	ENST00000519151	ENST00000509171		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-intron	ENST00000519151	ENST00000503000		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-5UTR	ENST00000519151	ENST00000508471		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-intron	ENST00000519151	ENST00000505421		TCGA	LD	LUAD	TCGA-55-8513-01A	ALG11	chr13	52586598	+	ZFYVE28	chr4	2275943	-
intron-3CDS	ENST00000352393	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000352393	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000352393	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000317677	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000317677	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000317677	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000397445	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000397445	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000397445	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000317619	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000317619	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000317619	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000397443	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000397443	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000397443	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-3CDS	ENST00000397446	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-3CDS	ENST00000397446	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-intron	ENST00000397446	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-3CDS	ENST00000397442	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-3CDS	ENST00000397442	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-intron	ENST00000397442	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000475146	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000475146	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000475146	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	CPNE1	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000374114	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000374114	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000374114	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000359646	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000359646	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000359646	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000374104	ENST00000374126		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-3CDS	ENST00000374104	ENST00000288466		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
intron-intron	ENST00000374104	ENST00000470105		TCGA	LD	LUAD	TCGA-55-8614-01A	RBM12	chr20	34252724	-	ZNF618	chr9	116731397	+
5UTR-3CDS	ENST00000361905	ENST00000396441		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000389707		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000401424		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000389708		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000361003		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000403290		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000403510		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000361905	ENST00000403482		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3UTR	ENST00000361905	ENST00000497429		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000396441		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000389707		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000401424		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000389708		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000361003		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000403290		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000403510		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527636	ENST00000403482		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3UTR	ENST00000527636	ENST00000497429		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000396441		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000389707		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000401424		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000389708		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000361003		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000403290		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000403510		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000527575	ENST00000403482		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3UTR	ENST00000527575	ENST00000497429		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000396441		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000389707		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000401424		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000389708		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000361003		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000403290		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000403510		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000334310	ENST00000403482		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
5UTR-3UTR	ENST00000334310	ENST00000497429		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000396441		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000389707		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000401424		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000389708		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000361003		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000403290		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000403510		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000361985	ENST00000403482		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3UTR	ENST00000361985	ENST00000497429		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000396441		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000389707		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000401424		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000389708		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000361003		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000403290		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000403510		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000526600	ENST00000403482		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3UTR	ENST00000526600	ENST00000497429		TCGA	LD	LUAD	TCGA-55-8614-01A	TEAD1	chr11	12697108	+	ARNTL	chr11	13387047	+
intron-3UTR	ENST00000282111	ENST00000216807		TCGA	LD	LUAD	TCGA-55-8615-01A	TCF7L1	chr2	85535037	+	BRMS1L	chr14	36340722	+
intron-intron	ENST00000282111	ENST00000543183		TCGA	LD	LUAD	TCGA-55-8615-01A	TCF7L1	chr2	85535037	+	BRMS1L	chr14	36340722	+
intron-3UTR	ENST00000494519	ENST00000216807		TCGA	LD	LUAD	TCGA-55-8615-01A	TCF7L1	chr2	85535037	+	BRMS1L	chr14	36340722	+
intron-intron	ENST00000494519	ENST00000543183		TCGA	LD	LUAD	TCGA-55-8615-01A	TCF7L1	chr2	85535037	+	BRMS1L	chr14	36340722	+
intron-5UTR	ENST00000356501	ENST00000375370		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-5UTR	ENST00000356501	ENST00000538138		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-3UTR	ENST00000356501	ENST00000465174		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-5UTR	ENST00000356501	ENST00000544902		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-5UTR	ENST00000375418	ENST00000375370		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-5UTR	ENST00000375418	ENST00000538138		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-3UTR	ENST00000375418	ENST00000465174		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
intron-5UTR	ENST00000375418	ENST00000544902		TCGA	LD	LUAD	TCGA-55-8620-01A	ADPRHL1	chr13	114062271	-	TFDP1	chr13	114240089	+
5CDS-5UTR	ENST00000357936	ENST00000423313		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000357936	ENST00000444639		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000357936	ENST00000545251		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000357936	ENST00000567124		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000431062	ENST00000423313		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000431062	ENST00000444639		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000431062	ENST00000545251		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000431062	ENST00000567124		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000426377	ENST00000423313		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000426377	ENST00000444639		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000426377	ENST00000545251		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000426377	ENST00000567124		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000444124	ENST00000423313		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000444124	ENST00000444639		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000444124	ENST00000545251		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000444124	ENST00000567124		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000380984	ENST00000423313		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000380984	ENST00000444639		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000380984	ENST00000545251		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
5CDS-5UTR	ENST00000380984	ENST00000567124		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
intron-5UTR	ENST00000489162	ENST00000423313		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
intron-5UTR	ENST00000489162	ENST00000444639		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
intron-5UTR	ENST00000489162	ENST00000545251		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
intron-5UTR	ENST00000489162	ENST00000567124		TCGA	LD	LUAD	TCGA-55-8620-01A	DDC	chr7	50571691	-	KIAA0040	chr1	175135873	-
Frame-shit	ENST00000337344	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000337344	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000337344	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
Frame-shit	ENST00000375477	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375477	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375477	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
Frame-shit	ENST00000375479	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375479	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375479	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
intron-3CDS	ENST00000493650	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
intron-intron	ENST00000493650	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
intron-intron	ENST00000493650	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
Frame-shit	ENST00000375459	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375459	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375459	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
Frame-shit	ENST00000246505	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000246505	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000246505	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
Frame-shit	ENST00000375457	ENST00000434316		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375457	ENST00000375391		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
5CDS-intron	ENST00000375457	ENST00000474393		TCGA	LD	LUAD	TCGA-55-8620-01A	PCID2	chr13	113845186	-	TMCO3	chr13	114201615	+
intron-intron	ENST00000372189	ENST00000357028		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000372189	ENST00000292035		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000372189	ENST00000474263		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372195	ENST00000357028		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372195	ENST00000292035		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000372195	ENST00000474263		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000372190	ENST00000357028		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000372190	ENST00000292035		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000372190	ENST00000474263		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000481260	ENST00000357028		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000481260	ENST00000292035		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
intron-intron	ENST00000481260	ENST00000474263		TCGA	LD	LUAD	TCGA-55-8620-01A	RAPGEF1	chr9	134615157	-	MED27	chr9	134769379	-
5UTR-3CDS	ENST00000434316	ENST00000393446		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000434316	ENST00000265437		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000434316	ENST00000393451		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000434316	ENST00000393449		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000434316	ENST00000323984		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000434316	ENST00000432298		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000434316	ENST00000422922		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000434316	ENST00000487459		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000434316	ENST00000393443		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000434316	ENST00000393447		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000434316	ENST00000393444		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000434316	ENST00000465133		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000393446		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000265437		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000393451		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000393449		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000323984		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000432298		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3CDS	ENST00000375391	ENST00000422922		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000375391	ENST00000487459		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000375391	ENST00000393443		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000375391	ENST00000393447		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000375391	ENST00000393444		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
5UTR-3UTR	ENST00000375391	ENST00000465133		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000393446		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000265437		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000393451		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000393449		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000323984		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000432298		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3CDS	ENST00000474393	ENST00000422922		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3UTR	ENST00000474393	ENST00000487459		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3UTR	ENST00000474393	ENST00000393443		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3UTR	ENST00000474393	ENST00000393447		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3UTR	ENST00000474393	ENST00000393444		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
3UTR-3UTR	ENST00000474393	ENST00000465133		TCGA	LD	LUAD	TCGA-55-8620-01A	TMCO3	chr13	114145588	+	ST7	chr7	116739816	+
In-frame	ENST00000557325	ENST00000553458		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
In-frame	ENST00000557325	ENST00000350259		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
5CDS-intron	ENST00000557325	ENST00000555126		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
5CDS-5UTR	ENST00000557325	ENST00000556852		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
Frame-shit	ENST00000334696	ENST00000553458		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
Frame-shit	ENST00000334696	ENST00000350259		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
5CDS-intron	ENST00000334696	ENST00000555126		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
5CDS-5UTR	ENST00000334696	ENST00000556852		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000556242	ENST00000553458		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000556242	ENST00000350259		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000556242	ENST00000555126		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000556242	ENST00000556852		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000554664	ENST00000553458		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-3CDS	ENST00000554664	ENST00000350259		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-intron	ENST00000554664	ENST00000555126		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
intron-5UTR	ENST00000554664	ENST00000556852		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ENTPD5	chr14	74436713	-	ALDH6A1	chr14	74541720	-
In-frame	ENST00000292147	ENST00000589799		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ETHE1	chr19	44030353	-	ZNF235	chr19	44740882	-
5CDS-intron	ENST00000292147	ENST00000589248		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ETHE1	chr19	44030353	-	ZNF235	chr19	44740882	-
5CDS-intron	ENST00000292147	ENST00000291182		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ETHE1	chr19	44030353	-	ZNF235	chr19	44740882	-
In-frame	ENST00000600651	ENST00000589799		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ETHE1	chr19	44030353	-	ZNF235	chr19	44740882	-
5CDS-intron	ENST00000600651	ENST00000589248		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ETHE1	chr19	44030353	-	ZNF235	chr19	44740882	-
5CDS-intron	ENST00000600651	ENST00000291182		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ETHE1	chr19	44030353	-	ZNF235	chr19	44740882	-
intron-3CDS	ENST00000392341	ENST00000225737		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-3CDS	ENST00000392341	ENST00000395536		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-intron	ENST00000392341	ENST00000572155		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
5UTR-3CDS	ENST00000582743	ENST00000225737		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
5UTR-3CDS	ENST00000582743	ENST00000395536		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
5UTR-intron	ENST00000582743	ENST00000572155		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
3UTR-3CDS	ENST00000584781	ENST00000225737		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
3UTR-3CDS	ENST00000584781	ENST00000395536		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
3UTR-intron	ENST00000584781	ENST00000572155		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-3CDS	ENST00000392339	ENST00000225737		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-3CDS	ENST00000392339	ENST00000395536		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-intron	ENST00000392339	ENST00000572155		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-3CDS	ENST00000581287	ENST00000225737		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-3CDS	ENST00000581287	ENST00000395536		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
intron-intron	ENST00000581287	ENST00000572155		TCGA	LD	LUAD	TCGA-55-A48Y-01A	SLC16A3	chr17	80186982	+	AKAP10	chr17	19827830	-
5CDS-intron	ENST00000313732	ENST00000602758		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000313732	ENST00000602719		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000313732	ENST00000602583		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-5UTR	ENST00000313732	ENST00000602675		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-5UTR	ENST00000313732	ENST00000284245		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000313732	ENST00000602914		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-5UTR	ENST00000313732	ENST00000602766		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000564466	ENST00000602758		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000564466	ENST00000602719		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000564466	ENST00000602583		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-5UTR	ENST00000564466	ENST00000602675		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-5UTR	ENST00000564466	ENST00000284245		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-intron	ENST00000564466	ENST00000602914		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
5CDS-5UTR	ENST00000564466	ENST00000602766		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-intron	ENST00000569488	ENST00000602758		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-intron	ENST00000569488	ENST00000602719		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-intron	ENST00000569488	ENST00000602583		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-5UTR	ENST00000569488	ENST00000602675		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-5UTR	ENST00000569488	ENST00000284245		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-intron	ENST00000569488	ENST00000602914		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
intron-5UTR	ENST00000569488	ENST00000602766		TCGA	LD	LUAD	TCGA-55-A48Y-01A	ZDHHC7	chr16	85010701	-	C16orf74	chr16	85743891	-
Frame-shit	ENST00000382009	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000382009	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000382009	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000382009	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000382009	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000382009	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000237364	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000237364	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000237364	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000237364	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000237364	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000237364	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000467087	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000467087	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000467087	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000467087	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000467087	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000467087	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000412829	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000412829	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000412829	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000412829	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000412829	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000412829	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000467011	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000467011	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000467011	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000467011	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000467011	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000467011	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000465503	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000465503	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000465503	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000465503	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000465503	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000465503	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
intron-3CDS	ENST00000478425	ENST00000297423		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
intron-5UTR	ENST00000478425	ENST00000518074		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
intron-5UTR	ENST00000478425	ENST00000541342		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
intron-3UTR	ENST00000478425	ENST00000521214		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
intron-intron	ENST00000478425	ENST00000517693		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
intron-intron	ENST00000478425	ENST00000518060		TCGA	LD	LUAD	TCGA-55-A48Z-01A	STIM2	chr4	27019606	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000339364	ENST00000323851		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-5UTR	ENST00000339364	ENST00000354944		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-intron	ENST00000339364	ENST00000521414		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-5UTR	ENST00000339364	ENST00000537882		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-5UTR	ENST00000339364	ENST00000414097		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-5UTR	ENST00000339364	ENST00000518176		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-intron	ENST00000339364	ENST00000522476		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
5CDS-5UTR	ENST00000339364	ENST00000518066		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000468783	ENST00000323851		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000468783	ENST00000354944		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-intron	ENST00000468783	ENST00000521414		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000468783	ENST00000537882		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000468783	ENST00000414097		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000468783	ENST00000518176		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-intron	ENST00000468783	ENST00000522476		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000468783	ENST00000518066		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371110	ENST00000323851		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371110	ENST00000354944		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-intron	ENST00000371110	ENST00000521414		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371110	ENST00000537882		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371110	ENST00000414097		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371110	ENST00000518176		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-intron	ENST00000371110	ENST00000522476		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371110	ENST00000518066		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371109	ENST00000323851		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371109	ENST00000354944		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-intron	ENST00000371109	ENST00000521414		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371109	ENST00000537882		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371109	ENST00000414097		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371109	ENST00000518176		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-intron	ENST00000371109	ENST00000522476		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
intron-5UTR	ENST00000371109	ENST00000518066		TCGA	LD	LUAD	TCGA-55-A490-01A	PIK3AP1	chr10	98469324	-	NDRG1	chr8	134296572	-
3UTR-3CDS	ENST00000519937	ENST00000379056		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000519937	ENST00000529421		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000519937	ENST00000530705		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000519937	ENST00000379060		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000519937	ENST00000379055		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-intron	ENST00000519937	ENST00000309246		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-3CDS	ENST00000342375	ENST00000379056		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000342375	ENST00000529421		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000342375	ENST00000530705		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000342375	ENST00000379060		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000342375	ENST00000379055		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-intron	ENST00000342375	ENST00000309246		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-3CDS	ENST00000393822	ENST00000379056		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000393822	ENST00000529421		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000393822	ENST00000530705		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000393822	ENST00000379060		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000393822	ENST00000379055		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-intron	ENST00000393822	ENST00000309246		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-3CDS	ENST00000409383	ENST00000379056		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000409383	ENST00000529421		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000409383	ENST00000530705		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000409383	ENST00000379060		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-5UTR	ENST00000409383	ENST00000379055		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
3UTR-intron	ENST00000409383	ENST00000309246		TCGA	LD	LUAD	TCGA-55-A492-01A	SFTPB	chr2	85888577	-	TPT1	chr13	45911523	-
5CDS-5UTR	ENST00000266383	ENST00000354662		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000441439		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000447609		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000320122		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000261169		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000540848		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000535535		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000537304		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000541295		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000534946		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000540445		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000541846		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266383	ENST00000537568		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000354662		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000441439		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000447609		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000320122		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000261169		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000540848		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000535535		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000537304		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000541295		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000534946		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000540445		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000541846		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
intron-5UTR	ENST00000544638	ENST00000537568		TCGA	LD	LUAD	TCGA-55-A493-01A	B4GALNT3	chr12	569711	+	LMO3	chr12	16753802	-
In-frame	ENST00000313654	ENST00000269221		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
In-frame	ENST00000313654	ENST00000590868		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
5CDS-intron	ENST00000313654	ENST00000591367		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
In-frame	ENST00000399516	ENST00000269221		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
In-frame	ENST00000399516	ENST00000590868		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
5CDS-intron	ENST00000399516	ENST00000591367		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-3CDS	ENST00000269217	ENST00000269221		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-3CDS	ENST00000269217	ENST00000590868		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-intron	ENST00000269217	ENST00000591367		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-3CDS	ENST00000587184	ENST00000269221		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-3CDS	ENST00000587184	ENST00000590868		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-intron	ENST00000587184	ENST00000591367		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-3CDS	ENST00000588770	ENST00000269221		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-3CDS	ENST00000588770	ENST00000590868		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
intron-intron	ENST00000588770	ENST00000591367		TCGA	LD	LUAD	TCGA-55-A493-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21109143	+
5CDS-intron	ENST00000474629	ENST00000539805		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
5CDS-5UTR	ENST00000474629	ENST00000480436		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
5CDS-5UTR	ENST00000474629	ENST00000337743		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
5CDS-intron	ENST00000474629	ENST00000544472		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
intron-intron	ENST00000475640	ENST00000539805		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
intron-5UTR	ENST00000475640	ENST00000480436		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
intron-5UTR	ENST00000475640	ENST00000337743		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
intron-intron	ENST00000475640	ENST00000544472		TCGA	LD	LUAD	TCGA-55-A493-01A	PARP14	chr3	122420482	+	TASP1	chr20	13539761	-
5CDS-5UTR	ENST00000563675	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5CDS-5UTR	ENST00000563675	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000541464	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000381414	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000396229	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
5UTR-5UTR	ENST00000542583	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000219821	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000561503	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000476258		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000405458		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000409753		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000482348		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000356033		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000470924		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000481647		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000392566		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000581874		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
intron-5UTR	ENST00000564959	ENST00000465454		TCGA	LD	LUAD	TCGA-55-A493-01A	TMC5	chr16	19441962	+	HN1	chr17	73144766	-
Frame-shit	ENST00000465804	ENST00000446160		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000465804	ENST00000383050		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000465804	ENST00000462519		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000465804	ENST00000473672		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
Frame-shit	ENST00000360632	ENST00000446160		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000360632	ENST00000383050		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000360632	ENST00000462519		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000360632	ENST00000473672		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
In-frame	ENST00000467467	ENST00000446160		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000467467	ENST00000383050		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000467467	ENST00000462519		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000467467	ENST00000473672		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
intron-3CDS	ENST00000474080	ENST00000446160		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
intron-intron	ENST00000474080	ENST00000383050		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
intron-intron	ENST00000474080	ENST00000462519		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
intron-intron	ENST00000474080	ENST00000473672		TCGA	LD	LUAD	TCGA-55-A493-01A	WWTR1	chr3	149374663	-	ANKUB1	chr3	149479400	-
intron-3CDS	ENST00000431530	ENST00000326291		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000431530	ENST00000489922		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-3CDS	ENST00000380808	ENST00000326291		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000380808	ENST00000489922		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-3CDS	ENST00000542829	ENST00000326291		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000542829	ENST00000489922		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-3CDS	ENST00000400542	ENST00000326291		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000400542	ENST00000489922		TCGA	LD	LUAD	TCGA-55-A494-01A	MTUS2	chr13	29413987	+	PIBF1	chr13	73467922	+
In-frame	ENST00000556611	ENST00000280979		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000556611	ENST00000557354		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000556611	ENST00000557272		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
5CDS-intron	ENST00000556611	ENST00000554449		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000539826	ENST00000280979		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000539826	ENST00000557354		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000539826	ENST00000557272		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
5CDS-intron	ENST00000539826	ENST00000554449		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000396582	ENST00000280979		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000396582	ENST00000557354		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000396582	ENST00000557272		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-intron	ENST00000396582	ENST00000554449		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000432921	ENST00000280979		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000432921	ENST00000557354		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000432921	ENST00000557272		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
5CDS-intron	ENST00000432921	ENST00000554449		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000345122	ENST00000280979		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000345122	ENST00000557354		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
In-frame	ENST00000345122	ENST00000557272		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
5CDS-intron	ENST00000345122	ENST00000554449		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000433497	ENST00000280979		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000433497	ENST00000557354		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000433497	ENST00000557272		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
intron-intron	ENST00000433497	ENST00000554449		TCGA	LD	LUAD	TCGA-55-A4DG-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33004760	+
5CDS-intron	ENST00000393328	ENST00000552491		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393328	ENST00000547825		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393328	ENST00000552823		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393328	ENST00000394943		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393328	ENST00000341247		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000393328	ENST00000552783		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393328	ENST00000552909		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393328	ENST00000552008		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000552491		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000547825		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000552823		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000394943		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000341247		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000393331	ENST00000552783		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000552909		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000393331	ENST00000552008		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000552491		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000547825		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000552823		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000394943		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000341247		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000347630	ENST00000552783		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000552909		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000347630	ENST00000552008		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000552491		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000547825		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000552823		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000394943		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000341247		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000504102	ENST00000552783		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000552909		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000504102	ENST00000552008		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000552491		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000547825		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000552823		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000394943		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000341247		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000503676	ENST00000552783		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000552909		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000503676	ENST00000552008		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000552491		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000547825		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000552823		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000394943		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000341247		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-5UTR	ENST00000513080	ENST00000552783		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000552909		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000513080	ENST00000552008		TCGA	LD	LUAD	TCGA-55-A4DG-01A	SPOP	chr17	47696343	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000388995	ENST00000577886		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000388995	ENST00000416464		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000388995	ENST00000578237		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000388995	ENST00000336708		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000388995	ENST00000579219		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000388995	ENST00000581224		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000585154	ENST00000577886		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000585154	ENST00000416464		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000585154	ENST00000578237		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000585154	ENST00000336708		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000585154	ENST00000579219		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000585154	ENST00000581224		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000345041	ENST00000577886		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000345041	ENST00000416464		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000345041	ENST00000578237		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000345041	ENST00000336708		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000345041	ENST00000579219		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
5CDS-5UTR	ENST00000345041	ENST00000581224		TCGA	LD	LUAD	TCGA-62-8394-01A	FAM83G	chr17	18891560	-	TRIM16	chr17	15546130	-
intron-5UTR	ENST00000373025	ENST00000302182		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-5UTR	ENST00000373025	ENST00000535788		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-3UTR	ENST00000373025	ENST00000578649		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-intron	ENST00000373025	ENST00000395839		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-intron	ENST00000373025	ENST00000395837		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-5UTR	ENST00000425343	ENST00000302182		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-5UTR	ENST00000425343	ENST00000535788		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-3UTR	ENST00000425343	ENST00000578649		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-intron	ENST00000425343	ENST00000395839		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
intron-intron	ENST00000425343	ENST00000395837		TCGA	LD	LUAD	TCGA-62-8395-01A	PGC	chr6	41708313	-	UBB	chr17	16284428	+
5UTR-3UTR	ENST00000248929	ENST00000472110		TCGA	LD	LUAD	TCGA-62-8395-01A	SGSM3	chr22	40766692	+	C22orf46	chr22	42086788	+
5UTR-3UTR	ENST00000248929	ENST00000402966		TCGA	LD	LUAD	TCGA-62-8395-01A	SGSM3	chr22	40766692	+	C22orf46	chr22	42086788	+
5UTR-3UTR	ENST00000454798	ENST00000472110		TCGA	LD	LUAD	TCGA-62-8395-01A	SGSM3	chr22	40766692	+	C22orf46	chr22	42086788	+
5UTR-3UTR	ENST00000454798	ENST00000402966		TCGA	LD	LUAD	TCGA-62-8395-01A	SGSM3	chr22	40766692	+	C22orf46	chr22	42086788	+
Frame-shit	ENST00000264335	ENST00000331238		TCGA	LD	LUAD	TCGA-62-8395-01A	YWHAE	chr17	1303341	-	RTN4RL1	chr17	1841102	-
5UTR-3CDS	ENST00000571732	ENST00000331238		TCGA	LD	LUAD	TCGA-62-8395-01A	YWHAE	chr17	1303341	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000573026	ENST00000331238		TCGA	LD	LUAD	TCGA-62-8395-01A	YWHAE	chr17	1303341	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000575977	ENST00000331238		TCGA	LD	LUAD	TCGA-62-8395-01A	YWHAE	chr17	1303341	-	RTN4RL1	chr17	1841102	-
5UTR-3CDS	ENST00000498643	ENST00000331238		TCGA	LD	LUAD	TCGA-62-8395-01A	YWHAE	chr17	1303341	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000393997	ENST00000569600		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
Frame-shit	ENST00000393997	ENST00000219139		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
5CDS-intron	ENST00000393997	ENST00000569683		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
Frame-shit	ENST00000360833	ENST00000569600		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
Frame-shit	ENST00000360833	ENST00000219139		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
5CDS-intron	ENST00000360833	ENST00000569683		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
Frame-shit	ENST00000477898	ENST00000569600		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
Frame-shit	ENST00000477898	ENST00000219139		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
5CDS-intron	ENST00000477898	ENST00000569683		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
3UTR-3CDS	ENST00000571638	ENST00000569600		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
3UTR-3CDS	ENST00000571638	ENST00000219139		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
3UTR-intron	ENST00000571638	ENST00000569683		TCGA	LD	LUAD	TCGA-62-A46O-01A	ELMO3	chr16	67234264	+	C16orf70	chr16	67173887	+
5CDS-5UTR	ENST00000294435	ENST00000403197		TCGA	LD	LUAD	TCGA-62-A46O-01A	RBP7	chr1	10067806	+	NMNAT1	chr1	10032076	+
5CDS-5UTR	ENST00000294435	ENST00000377205		TCGA	LD	LUAD	TCGA-62-A46O-01A	RBP7	chr1	10067806	+	NMNAT1	chr1	10032076	+
5CDS-3UTR	ENST00000294435	ENST00000492735		TCGA	LD	LUAD	TCGA-62-A46O-01A	RBP7	chr1	10067806	+	NMNAT1	chr1	10032076	+
5UTR-3CDS	ENST00000372025	ENST00000372009		TCGA	LD	LUAD	TCGA-62-A46O-01A	TMEM69	chr1	46153947	+	MAST2	chr1	46290105	+
5UTR-3CDS	ENST00000372025	ENST00000361297		TCGA	LD	LUAD	TCGA-62-A46O-01A	TMEM69	chr1	46153947	+	MAST2	chr1	46290105	+
5UTR-intron	ENST00000372025	ENST00000477968		TCGA	LD	LUAD	TCGA-62-A46O-01A	TMEM69	chr1	46153947	+	MAST2	chr1	46290105	+
3UTR-3CDS	ENST00000496366	ENST00000372009		TCGA	LD	LUAD	TCGA-62-A46O-01A	TMEM69	chr1	46153947	+	MAST2	chr1	46290105	+
3UTR-3CDS	ENST00000496366	ENST00000361297		TCGA	LD	LUAD	TCGA-62-A46O-01A	TMEM69	chr1	46153947	+	MAST2	chr1	46290105	+
3UTR-intron	ENST00000496366	ENST00000477968		TCGA	LD	LUAD	TCGA-62-A46O-01A	TMEM69	chr1	46153947	+	MAST2	chr1	46290105	+
In-frame	ENST00000519937	ENST00000376729		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
In-frame	ENST00000519937	ENST00000218056		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
5CDS-intron	ENST00000519937	ENST00000492715		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000342375	ENST00000376729		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000342375	ENST00000218056		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
5CDS-intron	ENST00000342375	ENST00000492715		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000393822	ENST00000376729		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000393822	ENST00000218056		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
5CDS-intron	ENST00000393822	ENST00000492715		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000409383	ENST00000376729		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000409383	ENST00000218056		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
5CDS-intron	ENST00000409383	ENST00000492715		TCGA	LD	LUAD	TCGA-62-A46P-01A	SFTPB	chr2	85892412	-	WDR13	chrX	48460172	+
Frame-shit	ENST00000351960	ENST00000407721		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
Frame-shit	ENST00000351960	ENST00000355527		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
Frame-shit	ENST00000358965	ENST00000407721		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
Frame-shit	ENST00000358965	ENST00000355527		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
Frame-shit	ENST00000393695	ENST00000407721		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
Frame-shit	ENST00000393695	ENST00000355527		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
intron-3CDS	ENST00000543450	ENST00000407721		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
intron-3CDS	ENST00000543450	ENST00000355527		TCGA	LD	LUAD	TCGA-62-A46S-01A	NUMA1	chr11	71717081	-	DHCR7	chr11	71150129	-
intron-3CDS	ENST00000581078	ENST00000245544		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3CDS	ENST00000581078	ENST00000541827		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3CDS	ENST00000581078	ENST00000579324		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3UTR	ENST00000581078	ENST00000449421		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-intron	ENST00000581078	ENST00000579298		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-intron	ENST00000581078	ENST00000447371		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-intron	ENST00000581078	ENST00000540768		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000582136	ENST00000245544		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000582136	ENST00000541827		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000582136	ENST00000579324		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-3UTR	ENST00000582136	ENST00000449421		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000582136	ENST00000579298		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000582136	ENST00000447371		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000582136	ENST00000540768		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000245543	ENST00000245544		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000245543	ENST00000541827		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000245543	ENST00000579324		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-3UTR	ENST00000245543	ENST00000449421		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000245543	ENST00000579298		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000245543	ENST00000447371		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000245543	ENST00000540768		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000584947	ENST00000245544		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000584947	ENST00000541827		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
Frame-shit	ENST00000584947	ENST00000579324		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-3UTR	ENST00000584947	ENST00000449421		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000584947	ENST00000579298		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000584947	ENST00000447371		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5CDS-intron	ENST00000584947	ENST00000540768		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3CDS	ENST00000579096	ENST00000245544		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3CDS	ENST00000579096	ENST00000541827		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3CDS	ENST00000579096	ENST00000579324		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-3UTR	ENST00000579096	ENST00000449421		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-intron	ENST00000579096	ENST00000579298		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-intron	ENST00000579096	ENST00000447371		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
intron-intron	ENST00000579096	ENST00000540768		TCGA	LD	LUAD	TCGA-62-A46U-01A	ARMC7	chr17	73106701	+	NUP85	chr17	73221198	+
5UTR-3CDS	ENST00000368655	ENST00000368073		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5UTR-3CDS	ENST00000368655	ENST00000326837		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5UTR-3CDS	ENST00000368655	ENST00000368074		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5UTR-3CDS	ENST00000368655	ENST00000608310		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5UTR-3CDS	ENST00000368655	ENST00000556710		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5UTR-3CDS	ENST00000368655	ENST00000610139		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5UTR-3CDS	ENST00000368655	ENST00000475733		TCGA	LD	LUAD	TCGA-62-A46U-01A	GATAD2B	chr1	153895209	-	DCAF8	chr1	160210160	-
5CDS-3UTR	ENST00000416426	ENST00000525037		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000416426	ENST00000530173		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000416426	ENST00000322157		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000416426	ENST00000544660		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000284073	ENST00000525037		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000284073	ENST00000530173		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000284073	ENST00000322157		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000284073	ENST00000544660		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000322684	ENST00000525037		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000322684	ENST00000530173		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000322684	ENST00000322157		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
5CDS-3UTR	ENST00000322684	ENST00000544660		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000442934	ENST00000525037		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000442934	ENST00000530173		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000442934	ENST00000322157		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000442934	ENST00000544660		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579180	ENST00000525037		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579180	ENST00000530173		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579180	ENST00000322157		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579180	ENST00000544660		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579505	ENST00000525037		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579505	ENST00000530173		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579505	ENST00000322157		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
intron-3UTR	ENST00000579505	ENST00000544660		TCGA	LD	LUAD	TCGA-62-A46U-01A	MSI2	chr17	55335715	+	NPEPPS	chr17	45668083	+
Frame-shit	ENST00000504570	ENST00000368508		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
Frame-shit	ENST00000504570	ENST00000368507		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
In-frame	ENST00000382051	ENST00000368508		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
In-frame	ENST00000382051	ENST00000368507		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
Frame-shit	ENST00000503434	ENST00000368508		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
Frame-shit	ENST00000503434	ENST00000368507		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
intron-3CDS	ENST00000510033	ENST00000368508		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
intron-3CDS	ENST00000510033	ENST00000368507		TCGA	LD	LUAD	TCGA-62-A46Y-01A	SLC34A2	chr4	25678324	+	ROS1	chr6	117650609	-
3UTR-intron	ENST00000466801	ENST00000584667		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
3UTR-intron	ENST00000466801	ENST00000355423		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
3UTR-intron	ENST00000466801	ENST00000579864		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409321	ENST00000584667		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409321	ENST00000355423		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409321	ENST00000579864		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409115	ENST00000584667		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409115	ENST00000355423		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409115	ENST00000579864		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000341369	ENST00000584667		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000341369	ENST00000355423		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000341369	ENST00000579864		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409683	ENST00000584667		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409683	ENST00000355423		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000409683	ENST00000579864		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000410064	ENST00000584667		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000410064	ENST00000355423		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
5CDS-intron	ENST00000410064	ENST00000579864		TCGA	LD	LUAD	TCGA-62-A471-01A	PTMA	chr2	232576129	+	SAP30BP	chr17	73686751	+
In-frame	ENST00000321765	ENST00000318074		TCGA	LD	LUAD	TCGA-62-A471-01A	SPAG5	chr17	26911168	-	SYTL1	chr1	27680204	+
In-frame	ENST00000321765	ENST00000543823		TCGA	LD	LUAD	TCGA-62-A471-01A	SPAG5	chr17	26911168	-	SYTL1	chr1	27680204	+
5CDS-3UTR	ENST00000321765	ENST00000490170		TCGA	LD	LUAD	TCGA-62-A471-01A	SPAG5	chr17	26911168	-	SYTL1	chr1	27680204	+
intron-intron	ENST00000264434	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000264434	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000264434	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000264434	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000264434	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000264434	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000264434	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000420306	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5UTR-intron	ENST00000470096	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	C2orf42	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000433529	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000415783	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000282574	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000445587	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
intron-intron	ENST00000482876	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000356842		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000359629		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000538214		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000537768		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000335712		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000477659		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-intron	ENST00000416149	ENST00000358510		TCGA	LD	LUAD	TCGA-64-1676-01A	TIA1	chr2	70475537	-	BCL11A	chr2	60743653	-
5CDS-5UTR	ENST00000412331	ENST00000542515		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000412331	ENST00000279147		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000412331	ENST00000536870		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000412331	ENST00000535657		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000412331	ENST00000539414		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000412331	ENST00000542341		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-5UTR	ENST00000381683	ENST00000542515		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000381683	ENST00000279147		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000381683	ENST00000536870		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000381683	ENST00000535657		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000381683	ENST00000539414		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000381683	ENST00000542341		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-5UTR	ENST00000406934	ENST00000542515		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000406934	ENST00000279147		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000406934	ENST00000536870		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000406934	ENST00000535657		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000406934	ENST00000539414		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
5CDS-intron	ENST00000406934	ENST00000542341		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
intron-5UTR	ENST00000476955	ENST00000542515		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
intron-intron	ENST00000476955	ENST00000279147		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
intron-intron	ENST00000476955	ENST00000536870		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
intron-intron	ENST00000476955	ENST00000535657		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
intron-intron	ENST00000476955	ENST00000539414		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
intron-intron	ENST00000476955	ENST00000542341		TCGA	LD	LUAD	TCGA-64-1678-01A	EIF3L	chr22	38274178	+	ORAOV1	chr11	69469152	-
Frame-shit	ENST00000255078	ENST00000403305		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
Frame-shit	ENST00000255078	ENST00000249079		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
Frame-shit	ENST00000255078	ENST00000403026		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
Frame-shit	ENST00000539224	ENST00000403305		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
Frame-shit	ENST00000539224	ENST00000249079		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
Frame-shit	ENST00000539224	ENST00000403026		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
intron-3CDS	ENST00000541229	ENST00000403305		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
intron-3CDS	ENST00000541229	ENST00000249079		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
intron-3CDS	ENST00000541229	ENST00000403026		TCGA	LD	LUAD	TCGA-64-1678-01A	IGHMBP2	chr11	68671506	+	C22orf23	chr22	38341180	-
Frame-shit	ENST00000406386	ENST00000260323		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000406386	ENST00000537900		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000406386	ENST00000545554		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
5CDS-5UTR	ENST00000406386	ENST00000539562		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
intron-3CDS	ENST00000407319	ENST00000260323		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
intron-3CDS	ENST00000407319	ENST00000537900		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
intron-3CDS	ENST00000407319	ENST00000545554		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
intron-5UTR	ENST00000407319	ENST00000539562		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000403663	ENST00000260323		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000403663	ENST00000537900		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
Frame-shit	ENST00000403663	ENST00000545554		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
5CDS-5UTR	ENST00000403663	ENST00000539562		TCGA	LD	LUAD	TCGA-64-1678-01A	TRIOBP	chr22	38165382	+	UNC13C	chr15	54914525	+
5CDS-5UTR	ENST00000334126	ENST00000355693		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000334126	ENST00000545127		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000334126	ENST00000541455		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000334126	ENST00000537289		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-intron	ENST00000334126	ENST00000537581		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000313663	ENST00000355693		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000313663	ENST00000545127		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000313663	ENST00000541455		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000313663	ENST00000537289		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-intron	ENST00000313663	ENST00000537581		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000542452	ENST00000355693		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000542452	ENST00000545127		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000542452	ENST00000541455		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000542452	ENST00000537289		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-intron	ENST00000542452	ENST00000537581		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000539061	ENST00000355693		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000539061	ENST00000545127		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000539061	ENST00000541455		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-5UTR	ENST00000539061	ENST00000537289		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
intron-intron	ENST00000539061	ENST00000537581		TCGA	LD	LUAD	TCGA-64-1679-01A	C2CD3	chr11	73801858	-	COA4	chr11	73584439	-
5CDS-5UTR	ENST00000374317	ENST00000374312		TCGA	LD	LUAD	TCGA-64-1679-01A	GPRIN2	chr10	46999179	-	NPY4R	chr10	47083694	-
5CDS-intron	ENST00000374317	ENST00000395716		TCGA	LD	LUAD	TCGA-64-1679-01A	GPRIN2	chr10	46999179	-	NPY4R	chr10	47083694	-
5CDS-5UTR	ENST00000374314	ENST00000374312		TCGA	LD	LUAD	TCGA-64-1679-01A	GPRIN2	chr10	46999179	-	NPY4R	chr10	47083694	-
5CDS-intron	ENST00000374314	ENST00000395716		TCGA	LD	LUAD	TCGA-64-1679-01A	GPRIN2	chr10	46999179	-	NPY4R	chr10	47083694	-
In-frame	ENST00000426263	ENST00000372458		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
In-frame	ENST00000426263	ENST00000413844		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
5CDS-5UTR	ENST00000426263	ENST00000470769		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
intron-3CDS	ENST00000475162	ENST00000372458		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
intron-3CDS	ENST00000475162	ENST00000413844		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
intron-5UTR	ENST00000475162	ENST00000470769		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
In-frame	ENST00000415851	ENST00000372458		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
In-frame	ENST00000415851	ENST00000413844		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
5CDS-5UTR	ENST00000415851	ENST00000470769		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
In-frame	ENST00000372500	ENST00000372458		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
In-frame	ENST00000372500	ENST00000413844		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
5CDS-5UTR	ENST00000372500	ENST00000470769		TCGA	LD	LUAD	TCGA-64-1679-01A	SLC2A1	chr1	43424305	-	ELOVL1	chr1	43830465	-
intron-3CDS	ENST00000356352	ENST00000491614		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000356352	ENST00000378937		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000356352	ENST00000537776		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000356352	ENST00000378952		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000356352	ENST00000378940		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000356352	ENST00000378927		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
5UTR-3CDS	ENST00000357604	ENST00000491614		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
5UTR-3CDS	ENST00000357604	ENST00000378937		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
5UTR-3CDS	ENST00000357604	ENST00000537776		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
5UTR-5UTR	ENST00000357604	ENST00000378952		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
5UTR-5UTR	ENST00000357604	ENST00000378940		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
5UTR-5UTR	ENST00000357604	ENST00000378927		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000397053	ENST00000491614		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000397053	ENST00000378937		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000397053	ENST00000537776		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000397053	ENST00000378952		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000397053	ENST00000378940		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000397053	ENST00000378927		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000460569	ENST00000491614		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000460569	ENST00000378937		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-3CDS	ENST00000460569	ENST00000537776		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000460569	ENST00000378952		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000460569	ENST00000378940		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
intron-5UTR	ENST00000460569	ENST00000378927		TCGA	LD	LUAD	TCGA-64-1679-01A	UPF2	chr10	12084754	-	NUDT5	chr10	12214865	-
Frame-shit	ENST00000409074	ENST00000440884		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000409074	ENST00000416682		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000409074	ENST00000429436		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000409074	ENST00000303622		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000409074	ENST00000216288		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000409074	ENST00000553942		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000409074	ENST00000335102		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000409074	ENST00000561071		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000556253	ENST00000440884		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000556253	ENST00000416682		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000556253	ENST00000429436		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000556253	ENST00000303622		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000556253	ENST00000216288		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000556253	ENST00000553942		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000556253	ENST00000335102		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000556253	ENST00000561071		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000247618	ENST00000440884		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000247618	ENST00000416682		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000247618	ENST00000429436		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000247618	ENST00000303622		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000247618	ENST00000216288		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000247618	ENST00000553942		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000247618	ENST00000335102		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000247618	ENST00000561071		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000440884		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000416682		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000429436		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000303622		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000216288		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000553942		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3CDS	ENST00000477116	ENST00000335102		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
intron-3UTR	ENST00000477116	ENST00000561071		TCGA	LD	LUAD	TCGA-64-1680-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103969219	+
In-frame	ENST00000370939	ENST00000377795		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
Frame-shit	ENST00000370939	ENST00000353334		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
5CDS-intron	ENST00000370939	ENST00000524315		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
5CDS-intron	ENST00000370939	ENST00000009530		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
In-frame	ENST00000323557	ENST00000377795		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
Frame-shit	ENST00000323557	ENST00000353334		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
5CDS-intron	ENST00000323557	ENST00000524315		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
5CDS-intron	ENST00000323557	ENST00000009530		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
In-frame	ENST00000244426	ENST00000377795		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
Frame-shit	ENST00000244426	ENST00000353334		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
5CDS-intron	ENST00000244426	ENST00000524315		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
5CDS-intron	ENST00000244426	ENST00000009530		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
intron-3CDS	ENST00000461222	ENST00000377795		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
intron-3CDS	ENST00000461222	ENST00000353334		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
intron-intron	ENST00000461222	ENST00000524315		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
intron-intron	ENST00000461222	ENST00000009530		TCGA	LD	LUAD	TCGA-64-1680-01A	FBXO9	chr6	52960462	+	CD74	chr5	149782188	-
Frame-shit	ENST00000368508	ENST00000370939		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
Frame-shit	ENST00000368508	ENST00000323557		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
Frame-shit	ENST00000368508	ENST00000244426		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
5CDS-intron	ENST00000368508	ENST00000461222		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
Frame-shit	ENST00000368507	ENST00000370939		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
Frame-shit	ENST00000368507	ENST00000323557		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
Frame-shit	ENST00000368507	ENST00000244426		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
5CDS-intron	ENST00000368507	ENST00000461222		TCGA	LD	LUAD	TCGA-64-1680-01A	ROS1	chr6	117724302	-	FBXO9	chr6	52962520	+
intron-5UTR	ENST00000390548	ENST00000354297		TCGA	LD	LUAD	TCGA-64-5774-01A	IGHG1	chr14	106208010	-	BPIFA1	chr20	31823809	+
intron-5UTR	ENST00000390548	ENST00000375413		TCGA	LD	LUAD	TCGA-64-5774-01A	IGHG1	chr14	106208010	-	BPIFA1	chr20	31823809	+
intron-5UTR	ENST00000390548	ENST00000375422		TCGA	LD	LUAD	TCGA-64-5774-01A	IGHG1	chr14	106208010	-	BPIFA1	chr20	31823809	+
5CDS-3UTR	ENST00000404260	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
5CDS-3UTR	ENST00000403625	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
intron-3UTR	ENST00000406374	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
intron-3UTR	ENST00000406039	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
intron-3UTR	ENST00000478569	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
5CDS-3UTR	ENST00000490016	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
5CDS-3UTR	ENST00000403666	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
5CDS-3UTR	ENST00000405643	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
5CDS-3UTR	ENST00000261569	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
intron-3UTR	ENST00000407621	ENST00000513202		TCGA	LD	LUAD	TCGA-64-5774-01A	MAST4	chr5	66386059	+	GTF2H2B	chr5	69737243	+
intron-5UTR	ENST00000371080	ENST00000263441		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000371080	ENST00000395325		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000371080	ENST00000371069		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-intron	ENST00000371080	ENST00000498720		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000371079	ENST00000263441		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000371079	ENST00000395325		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000371079	ENST00000371069		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-intron	ENST00000371079	ENST00000498720		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000482426	ENST00000263441		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000482426	ENST00000395325		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000482426	ENST00000371069		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
intron-intron	ENST00000482426	ENST00000498720		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000545203	ENST00000263441		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000545203	ENST00000395325		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000545203	ENST00000371069		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
5CDS-intron	ENST00000545203	ENST00000498720		TCGA	LD	LUAD	TCGA-64-5775-01A	ROR1	chr1	64643672	+	DNAJC6	chr1	65830318	+
Frame-shit	ENST00000563679	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000563679	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000563679	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000325823	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000325823	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000325823	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000447912	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000447912	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000447912	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000535621	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000535621	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000535621	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
intron-3CDS	ENST00000455313	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
intron-3CDS	ENST00000455313	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
intron-3CDS	ENST00000455313	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000396410	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000396410	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000396410	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000569715	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000569715	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000569715	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000450288	ENST00000526520		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000450288	ENST00000531598		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000450288	ENST00000552140		TCGA	LD	LUAD	TCGA-64-5778-01A	PDXDC1	chr16	15123913	+	NPIPA3	chr16	14818175	+
Frame-shit	ENST00000251808	ENST00000309982		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000251808	ENST00000438105		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000251808	ENST00000297574		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000251808	ENST00000330955		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000251808	ENST00000306391		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5CDS-intron	ENST00000251808	ENST00000523754		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5UTR-3CDS	ENST00000395927	ENST00000309982		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5UTR-intron	ENST00000395927	ENST00000438105		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5UTR-intron	ENST00000395927	ENST00000297574		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5UTR-intron	ENST00000395927	ENST00000330955		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5UTR-intron	ENST00000395927	ENST00000306391		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5UTR-intron	ENST00000395927	ENST00000523754		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
intron-3CDS	ENST00000517674	ENST00000309982		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
intron-intron	ENST00000517674	ENST00000438105		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
intron-intron	ENST00000517674	ENST00000297574		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
intron-intron	ENST00000517674	ENST00000330955		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
intron-intron	ENST00000517674	ENST00000306391		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
intron-intron	ENST00000517674	ENST00000523754		TCGA	LD	LUAD	TCGA-67-3771-01A	GRHL2	chr8	102505017	+	BAALC	chr8	104225147	+
5CDS-3UTR	ENST00000371714	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371714	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371714	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371714	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371714	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371710	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371710	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371710	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371710	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000371710	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000337809	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000337809	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000337809	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000337809	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000337809	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000435686	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000435686	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000435686	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000435686	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000435686	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000447887	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000447887	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000447887	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000447887	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000447887	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000453295	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000453295	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000453295	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000453295	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000453295	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000428468	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000428468	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000428468	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000428468	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000428468	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000530544	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000530544	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000530544	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000530544	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000530544	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000531828	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000531828	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000531828	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000531828	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000531828	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000361556	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000361556	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000361556	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000361556	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000361556	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000473207	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000473207	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000473207	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000473207	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000473207	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000462759	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000462759	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000462759	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000462759	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000462759	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000486942	ENST00000474476		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000486942	ENST00000371218		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000486942	ENST00000303721		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000486942	ENST00000371212		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
intron-3UTR	ENST00000486942	ENST00000371210		TCGA	LD	LUAD	TCGA-67-3772-01A	OSBPL9	chr1	52135184	+	FGGY	chr1	60091660	+
Frame-shit	ENST00000379441	ENST00000257963		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000379441	ENST00000541224		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000379441	ENST00000426655		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000379441	ENST00000415850		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000379441	ENST00000542485		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000379441	ENST00000563121		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000179765	ENST00000257963		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000179765	ENST00000541224		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000179765	ENST00000426655		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5UTR-3CDS	ENST00000179765	ENST00000415850		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5UTR-5UTR	ENST00000179765	ENST00000542485		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5UTR-intron	ENST00000179765	ENST00000563121		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000551812	ENST00000257963		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000551812	ENST00000541224		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000551812	ENST00000426655		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000551812	ENST00000415850		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000551812	ENST00000542485		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000551812	ENST00000563121		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000549884	ENST00000257963		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000549884	ENST00000541224		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000549884	ENST00000426655		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000549884	ENST00000415850		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-5UTR	ENST00000549884	ENST00000542485		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-intron	ENST00000549884	ENST00000563121		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000257963		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000541224		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000426655		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-3CDS	ENST00000553222	ENST00000415850		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-5UTR	ENST00000553222	ENST00000542485		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
intron-intron	ENST00000553222	ENST00000563121		TCGA	LD	LUAD	TCGA-67-3774-01A	BAZ2A	chr12	57029966	-	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000466830	ENST00000307363		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000466830	ENST00000399402		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000466830	ENST00000445488		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000466830	ENST00000307377		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000466830	ENST00000497796		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000423894	ENST00000307363		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000423894	ENST00000399402		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000423894	ENST00000445488		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000423894	ENST00000307377		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
5CDS-intron	ENST00000423894	ENST00000497796		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
intron-intron	ENST00000469102	ENST00000307363		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
intron-intron	ENST00000469102	ENST00000399402		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
intron-intron	ENST00000469102	ENST00000445488		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
intron-intron	ENST00000469102	ENST00000307377		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
intron-intron	ENST00000469102	ENST00000497796		TCGA	LD	LUAD	TCGA-67-3774-01A	CMC1	chr3	28283303	+	GLB1	chr3	33118729	-
In-frame	ENST00000277541	ENST00000551577		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
In-frame	ENST00000277541	ENST00000266534		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
Frame-shit	ENST00000277541	ENST00000536799		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
5CDS-intron	ENST00000277541	ENST00000546978		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
intron-3CDS	ENST00000491649	ENST00000551577		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
intron-3CDS	ENST00000491649	ENST00000266534		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
intron-3CDS	ENST00000491649	ENST00000536799		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
intron-intron	ENST00000491649	ENST00000546978		TCGA	LD	LUAD	TCGA-67-3774-01A	NOTCH1	chr9	139407473	-	TMEM117	chr12	44338013	+
intron-3CDS	ENST00000413953	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000413953	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000413953	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000413953	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-3CDS	ENST00000347140	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-3CDS	ENST00000347140	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-intron	ENST00000347140	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-intron	ENST00000347140	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000358907	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000358907	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000358907	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000358907	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-3CDS	ENST00000402412	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-3CDS	ENST00000402412	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-intron	ENST00000402412	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
5UTR-intron	ENST00000402412	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000441731	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000441731	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000441731	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000441731	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000403821	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000403821	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000403821	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000403821	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000546843	ENST00000552032		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-3CDS	ENST00000546843	ENST00000547771		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000546843	ENST00000299350		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
intron-intron	ENST00000546843	ENST00000535034		TCGA	LD	LUAD	TCGA-67-3774-01A	R3HDM2	chr12	57824503	-	MYRFL	chr12	70303749	+
Frame-shit	ENST00000435706	ENST00000282538		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000435706	ENST00000498387		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000435706	ENST00000454381		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
Frame-shit	ENST00000264331	ENST00000282538		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000264331	ENST00000498387		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000264331	ENST00000454381		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
Frame-shit	ENST00000542520	ENST00000282538		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000542520	ENST00000498387		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000542520	ENST00000454381		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
Frame-shit	ENST00000540199	ENST00000282538		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000540199	ENST00000498387		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
5CDS-intron	ENST00000540199	ENST00000454381		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
intron-3CDS	ENST00000475717	ENST00000282538		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
intron-intron	ENST00000475717	ENST00000498387		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
intron-intron	ENST00000475717	ENST00000454381		TCGA	LD	LUAD	TCGA-67-3774-01A	TOP2B	chr3	25646251	-	GADL1	chr3	30885958	-
3UTR-3CDS	ENST00000519937	ENST00000301740		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-intron	ENST00000519937	ENST00000574593		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-3CDS	ENST00000342375	ENST00000301740		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-intron	ENST00000342375	ENST00000574593		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-3CDS	ENST00000393822	ENST00000301740		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-intron	ENST00000393822	ENST00000574593		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-3CDS	ENST00000409383	ENST00000301740		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
3UTR-intron	ENST00000409383	ENST00000574593		TCGA	LD	LUAD	TCGA-67-4679-01B	SFTPB	chr2	85888577	-	SRRM2	chr16	2820353	+
In-frame	ENST00000222005	ENST00000262189		TCGA	LD	LUAD	TCGA-67-6217-01A	CDC37	chr19	10514054	-	KMT2C	chr7	151836876	-
In-frame	ENST00000222005	ENST00000355193		TCGA	LD	LUAD	TCGA-67-6217-01A	CDC37	chr19	10514054	-	KMT2C	chr7	151836876	-
5CDS-5UTR	ENST00000222005	ENST00000485655		TCGA	LD	LUAD	TCGA-67-6217-01A	CDC37	chr19	10514054	-	KMT2C	chr7	151836876	-
5CDS-intron	ENST00000222005	ENST00000485241		TCGA	LD	LUAD	TCGA-67-6217-01A	CDC37	chr19	10514054	-	KMT2C	chr7	151836876	-
5CDS-3UTR	ENST00000356948	ENST00000355272		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000356948	ENST00000356926		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000356948	ENST00000350812		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000356948	ENST00000345016		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-intron	ENST00000356948	ENST00000590683		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000350092	ENST00000355272		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000350092	ENST00000356926		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000350092	ENST00000350812		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000350092	ENST00000345016		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-intron	ENST00000350092	ENST00000590683		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000349038	ENST00000355272		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000349038	ENST00000356926		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000349038	ENST00000350812		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000349038	ENST00000345016		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-intron	ENST00000349038	ENST00000590683		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000394601	ENST00000355272		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000394601	ENST00000356926		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000394601	ENST00000350812		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000394601	ENST00000345016		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-intron	ENST00000394601	ENST00000590683		TCGA	LD	LUAD	TCGA-67-6217-01A	PTBP1	chr19	807902	+	AP3D1	chr19	2101399	-
5CDS-3UTR	ENST00000520408	ENST00000310542		TCGA	LD	LUAD	TCGA-67-6217-01A	TNKS	chr8	9437893	+	FAM86B3P	chr8	8101621	+
5CDS-3UTR	ENST00000310430	ENST00000310542		TCGA	LD	LUAD	TCGA-67-6217-01A	TNKS	chr8	9437893	+	FAM86B3P	chr8	8101621	+
5CDS-3UTR	ENST00000518281	ENST00000310542		TCGA	LD	LUAD	TCGA-67-6217-01A	TNKS	chr8	9437893	+	FAM86B3P	chr8	8101621	+
intron-3UTR	ENST00000522110	ENST00000310542		TCGA	LD	LUAD	TCGA-67-6217-01A	TNKS	chr8	9437893	+	FAM86B3P	chr8	8101621	+
intron-3UTR	ENST00000518027	ENST00000310542		TCGA	LD	LUAD	TCGA-67-6217-01A	TNKS	chr8	9437893	+	FAM86B3P	chr8	8101621	+
5CDS-5UTR	ENST00000330149	ENST00000280082		TCGA	LD	LUAD	TCGA-67-6217-01A	TRAPPC6B	chr14	39639219	-	MIA2	chr14	39703219	+
5CDS-intron	ENST00000330149	ENST00000556784		TCGA	LD	LUAD	TCGA-67-6217-01A	TRAPPC6B	chr14	39639219	-	MIA2	chr14	39703219	+
5CDS-5UTR	ENST00000347691	ENST00000280082		TCGA	LD	LUAD	TCGA-67-6217-01A	TRAPPC6B	chr14	39639219	-	MIA2	chr14	39703219	+
5CDS-intron	ENST00000347691	ENST00000556784		TCGA	LD	LUAD	TCGA-67-6217-01A	TRAPPC6B	chr14	39639219	-	MIA2	chr14	39703219	+
5UTR-5UTR	ENST00000557764	ENST00000280082		TCGA	LD	LUAD	TCGA-67-6217-01A	TRAPPC6B	chr14	39639219	-	MIA2	chr14	39703219	+
5UTR-intron	ENST00000557764	ENST00000556784		TCGA	LD	LUAD	TCGA-67-6217-01A	TRAPPC6B	chr14	39639219	-	MIA2	chr14	39703219	+
In-frame	ENST00000350811	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000350811	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000350811	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000350811	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000350811	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000350811	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000457475	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000457475	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000457475	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000457475	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000457475	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000457475	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000395749	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000395749	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000395749	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000395749	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000395749	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000395749	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5UTR-3CDS	ENST00000502837	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5UTR-3CDS	ENST00000502837	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5UTR-3CDS	ENST00000502837	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5UTR-3UTR	ENST00000502837	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5UTR-intron	ENST00000502837	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5UTR-intron	ENST00000502837	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000440254	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000440254	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000440254	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000440254	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000440254	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000440254	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000358707	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000358707	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000358707	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000358707	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000358707	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000358707	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000353625	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000353625	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000353625	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000353625	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000353625	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000353625	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000258682	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000258682	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000258682	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000258682	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000258682	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000258682	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000347193	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000347193	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000347193	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000347193	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000347193	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000347193	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000346990	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000346990	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000346990	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000346990	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000346990	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000346990	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000395747	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000395747	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
In-frame	ENST00000395747	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-3UTR	ENST00000395747	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000395747	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
5CDS-intron	ENST00000395747	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
intron-3CDS	ENST00000489429	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
intron-3CDS	ENST00000489429	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
intron-3CDS	ENST00000489429	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
intron-3UTR	ENST00000489429	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
intron-intron	ENST00000489429	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
intron-intron	ENST00000489429	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	CAMK2B	chr7	44364956	-	SPIDR	chr8	48308936	+
Frame-shit	ENST00000302279	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000302279	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000302279	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000302279	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000302279	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000302279	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000342116	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000342116	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000342116	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000342116	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000342116	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000342116	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
intron-3CDS	ENST00000524546	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
intron-5UTR	ENST00000524546	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
intron-5UTR	ENST00000524546	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
intron-3UTR	ENST00000524546	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
intron-intron	ENST00000524546	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
intron-intron	ENST00000524546	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000529687	ENST00000297423		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000529687	ENST00000518074		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-5UTR	ENST00000529687	ENST00000541342		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-3UTR	ENST00000529687	ENST00000521214		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000529687	ENST00000517693		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
5CDS-intron	ENST00000529687	ENST00000518060		TCGA	LD	LUAD	TCGA-69-7760-01A	FNTA	chr8	42932507	+	SPIDR	chr8	48192450	+
Frame-shit	ENST00000206595	ENST00000261182		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000393263		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000431879		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000547773		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000544816		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000542344		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000535020		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000549596		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000547993		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
In-frame	ENST00000206595	ENST00000552342		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000206595	ENST00000548044		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000261182		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000393263		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000431879		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000547773		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000544816		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000542344		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000535020		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000549596		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000547993		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000552342		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000544007	ENST00000548044		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000261182		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000393263		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000431879		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000547773		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000544816		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000542344		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000535020		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000549596		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000547993		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000552342		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
intron-3CDS	ENST00000438909	ENST00000548044		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000261182		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000393263		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000431879		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000547773		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000544816		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000542344		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000535020		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000549596		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000547993		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
In-frame	ENST00000553504	ENST00000552342		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
Frame-shit	ENST00000553504	ENST00000548044		TCGA	LD	LUAD	TCGA-69-7760-01A	G2E3	chr14	31050322	+	NAP1L1	chr12	76443565	-
In-frame	ENST00000297423	ENST00000302279		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
In-frame	ENST00000297423	ENST00000342116		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
5CDS-intron	ENST00000297423	ENST00000524546		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
5CDS-intron	ENST00000297423	ENST00000529687		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
In-frame	ENST00000518074	ENST00000302279		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
In-frame	ENST00000518074	ENST00000342116		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
5CDS-intron	ENST00000518074	ENST00000524546		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
5CDS-intron	ENST00000518074	ENST00000529687		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
In-frame	ENST00000541342	ENST00000302279		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
In-frame	ENST00000541342	ENST00000342116		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
5CDS-intron	ENST00000541342	ENST00000524546		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
5CDS-intron	ENST00000541342	ENST00000529687		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
3UTR-3CDS	ENST00000521214	ENST00000302279		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
3UTR-3CDS	ENST00000521214	ENST00000342116		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
3UTR-intron	ENST00000521214	ENST00000524546		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
3UTR-intron	ENST00000521214	ENST00000529687		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-3CDS	ENST00000517693	ENST00000302279		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-3CDS	ENST00000517693	ENST00000342116		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-intron	ENST00000517693	ENST00000524546		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-intron	ENST00000517693	ENST00000529687		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-3CDS	ENST00000518060	ENST00000302279		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-3CDS	ENST00000518060	ENST00000342116		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-intron	ENST00000518060	ENST00000524546		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
intron-intron	ENST00000518060	ENST00000529687		TCGA	LD	LUAD	TCGA-69-7760-01A	SPIDR	chr8	48353104	+	FNTA	chr8	42938261	+
Frame-shit	ENST00000225719	ENST00000360317		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000225719	ENST00000394175		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000225719	ENST00000309481		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000225719	ENST00000520542		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000225719	ENST00000418519		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000225719	ENST00000394179		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
Frame-shit	ENST00000543464	ENST00000360317		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000543464	ENST00000394175		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000543464	ENST00000309481		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000543464	ENST00000520542		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000543464	ENST00000418519		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000543464	ENST00000394179		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
intron-3CDS	ENST00000584051	ENST00000360317		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
intron-5UTR	ENST00000584051	ENST00000394175		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
intron-5UTR	ENST00000584051	ENST00000309481		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
intron-5UTR	ENST00000584051	ENST00000520542		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
intron-5UTR	ENST00000584051	ENST00000418519		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
intron-5UTR	ENST00000584051	ENST00000394179		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000225719	ENST00000304046		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-5UTR	ENST00000225719	ENST00000579695		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-5UTR	ENST00000225719	ENST00000394169		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-intron	ENST00000225719	ENST00000584220		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-intron	ENST00000225719	ENST00000582052		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-5UTR	ENST00000543464	ENST00000304046		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-5UTR	ENST00000543464	ENST00000579695		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-5UTR	ENST00000543464	ENST00000394169		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-intron	ENST00000543464	ENST00000584220		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
5CDS-intron	ENST00000543464	ENST00000582052		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
intron-5UTR	ENST00000584051	ENST00000304046		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
intron-5UTR	ENST00000584051	ENST00000579695		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
intron-5UTR	ENST00000584051	ENST00000394169		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
intron-intron	ENST00000584051	ENST00000584220		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
intron-intron	ENST00000584051	ENST00000582052		TCGA	LD	LUAD	TCGA-69-7761-01A	CPD	chr17	28712254	+	ORMDL3	chr17	38080473	-
Frame-shit	ENST00000310961	ENST00000390239		TCGA	LD	LUAD	TCGA-69-7761-01A	LRRC7	chr1	70505261	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000370958	ENST00000390239		TCGA	LD	LUAD	TCGA-69-7761-01A	LRRC7	chr1	70505261	+	IGKJ4	chr2	89160433	-
Frame-shit	ENST00000035383	ENST00000390239		TCGA	LD	LUAD	TCGA-69-7761-01A	LRRC7	chr1	70505261	+	IGKJ4	chr2	89160433	-
Frame-shit	ENST00000415775	ENST00000390239		TCGA	LD	LUAD	TCGA-69-7761-01A	LRRC7	chr1	70505261	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000565615	ENST00000390239		TCGA	LD	LUAD	TCGA-69-7761-01A	LRRC7	chr1	70505261	+	IGKJ4	chr2	89160433	-
In-frame	ENST00000541156	ENST00000216038		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-3UTR	ENST00000541156	ENST00000451746		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-intron	ENST00000541156	ENST00000476619		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
In-frame	ENST00000357137	ENST00000216038		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-3UTR	ENST00000357137	ENST00000451746		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-intron	ENST00000357137	ENST00000476619		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
In-frame	ENST00000544094	ENST00000216038		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-3UTR	ENST00000544094	ENST00000451746		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-intron	ENST00000544094	ENST00000476619		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
In-frame	ENST00000414396	ENST00000216038		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-3UTR	ENST00000414396	ENST00000451746		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-intron	ENST00000414396	ENST00000476619		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
intron-3CDS	ENST00000482652	ENST00000216038		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
intron-3UTR	ENST00000482652	ENST00000451746		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
intron-intron	ENST00000482652	ENST00000476619		TCGA	LD	LUAD	TCGA-69-7761-01A	XPNPEP3	chr22	41282519	+	RTCB	chr22	32784086	-
5CDS-5UTR	ENST00000392723	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000392723	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-5UTR	ENST00000361398	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000361398	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-5UTR	ENST00000271715	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000271715	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-5UTR	ENST00000368863	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000368863	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-5UTR	ENST00000409503	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000409503	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-5UTR	ENST00000531094	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000531094	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
intron-5UTR	ENST00000540984	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
intron-intron	ENST00000540984	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-5UTR	ENST00000491586	ENST00000235307		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
5CDS-intron	ENST00000491586	ENST00000367514		TCGA	LD	LUAD	TCGA-69-7763-01A	POGZ	chr1	151400299	-	C1orf21	chr1	184446520	+
Frame-shit	ENST00000263390	ENST00000253680		TCGA	LD	LUAD	TCGA-69-7973-01A	MED26	chr19	16738683	-	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000263390	ENST00000397372		TCGA	LD	LUAD	TCGA-69-7973-01A	MED26	chr19	16738683	-	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000263390	ENST00000593154		TCGA	LD	LUAD	TCGA-69-7973-01A	MED26	chr19	16738683	-	HSH2D	chr19	16263362	+
5CDS-intron	ENST00000263390	ENST00000588246		TCGA	LD	LUAD	TCGA-69-7973-01A	MED26	chr19	16738683	-	HSH2D	chr19	16263362	+
Frame-shit	ENST00000264932	ENST00000304623		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000264932	ENST00000359640		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000264932	ENST00000511377		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000264932	ENST00000458100		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000264932	ENST00000503622		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
5CDS-5UTR	ENST00000264932	ENST00000495388		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000504309	ENST00000304623		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000504309	ENST00000359640		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000504309	ENST00000511377		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000504309	ENST00000458100		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000504309	ENST00000503622		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
5CDS-5UTR	ENST00000504309	ENST00000495388		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000510361	ENST00000304623		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000510361	ENST00000359640		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000510361	ENST00000511377		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000510361	ENST00000458100		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
Frame-shit	ENST00000510361	ENST00000503622		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
5CDS-5UTR	ENST00000510361	ENST00000495388		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-3CDS	ENST00000507522	ENST00000304623		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-3CDS	ENST00000507522	ENST00000359640		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-3CDS	ENST00000507522	ENST00000511377		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-3CDS	ENST00000507522	ENST00000458100		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-3CDS	ENST00000507522	ENST00000503622		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-5UTR	ENST00000507522	ENST00000495388		TCGA	LD	LUAD	TCGA-69-7974-01A	SDHA	chr5	240591	+	CTNND2	chr5	11236935	-
intron-5UTR	ENST00000596528	ENST00000542413		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000596528	ENST00000600978		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000596528	ENST00000598168		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000596528	ENST00000411902		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000596528	ENST00000253727		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000596528	ENST00000599105		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000596528	ENST00000593926		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-5UTR	ENST00000599743	ENST00000542413		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000599743	ENST00000600978		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000599743	ENST00000598168		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000599743	ENST00000411902		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000599743	ENST00000253727		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000599743	ENST00000599105		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000599743	ENST00000593926		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-5UTR	ENST00000300619	ENST00000542413		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000300619	ENST00000600978		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000300619	ENST00000598168		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000300619	ENST00000411902		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000300619	ENST00000253727		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000300619	ENST00000599105		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000300619	ENST00000593926		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-5UTR	ENST00000397082	ENST00000542413		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000397082	ENST00000600978		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000397082	ENST00000598168		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000397082	ENST00000411902		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000397082	ENST00000253727		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000397082	ENST00000599105		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000397082	ENST00000593926		TCGA	LD	LUAD	TCGA-69-7978-01A	ZNF91	chr19	23541232	-	NR1H2	chr19	50855748	+
intron-intron	ENST00000487917	ENST00000342129		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
intron-intron	ENST00000487917	ENST00000340951		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
intron-intron	ENST00000487917	ENST00000479452		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
intron-intron	ENST00000487917	ENST00000475006		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
intron-intron	ENST00000487917	ENST00000465160		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
5CDS-intron	ENST00000323927	ENST00000342129		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
5CDS-intron	ENST00000323927	ENST00000340951		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
5CDS-intron	ENST00000323927	ENST00000479452		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
5CDS-intron	ENST00000323927	ENST00000475006		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
5CDS-intron	ENST00000323927	ENST00000465160		TCGA	LD	LUAD	TCGA-69-7979-01A	ANAPC2	chr9	140074633	-	EXD3	chr9	140202098	-
5CDS-5UTR	ENST00000283558	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000283558	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000283558	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000375630	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000375630	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375630	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000487903	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000487903	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000487903	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000375645	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-5UTR	ENST00000375645	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
5CDS-intron	ENST00000375645	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-5UTR	ENST00000419448	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-5UTR	ENST00000419448	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-intron	ENST00000419448	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	ATP11A	chr13	113516885	+	MCF2L	chr13	113556509	+
intron-3CDS	ENST00000257347	ENST00000283558		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
intron-3CDS	ENST00000257347	ENST00000375630		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
intron-3CDS	ENST00000257347	ENST00000487903		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
intron-3CDS	ENST00000257347	ENST00000375645		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
intron-intron	ENST00000257347	ENST00000419448		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
5UTR-3CDS	ENST00000535398	ENST00000283558		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
5UTR-3CDS	ENST00000535398	ENST00000375630		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
5UTR-3CDS	ENST00000535398	ENST00000487903		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
5UTR-3CDS	ENST00000535398	ENST00000375645		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
5UTR-intron	ENST00000535398	ENST00000419448		TCGA	LD	LUAD	TCGA-69-7979-01A	CARS2	chr13	111365484	-	ATP11A	chr13	113508593	+
Frame-shit	ENST00000376460	ENST00000283550		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
Frame-shit	ENST00000376460	ENST00000375699		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
Frame-shit	ENST00000339416	ENST00000283550		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
Frame-shit	ENST00000339416	ENST00000375699		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
In-frame	ENST00000448493	ENST00000283550		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
In-frame	ENST00000448493	ENST00000375699		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
Frame-shit	ENST00000442173	ENST00000283550		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
Frame-shit	ENST00000442173	ENST00000375699		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
intron-3CDS	ENST00000461998	ENST00000283550		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
intron-3CDS	ENST00000461998	ENST00000375699		TCGA	LD	LUAD	TCGA-69-7979-01A	DOCK9	chr13	99532801	-	SPACA7	chr13	113086758	+
5CDS-3UTR	ENST00000412331	ENST00000395996		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-3UTR	ENST00000412331	ENST00000358544		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-3UTR	ENST00000412331	ENST00000357162		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-intron	ENST00000412331	ENST00000355155		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-intron	ENST00000412331	ENST00000441350		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-intron	ENST00000412331	ENST00000521932		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-3UTR	ENST00000381683	ENST00000395996		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-3UTR	ENST00000381683	ENST00000358544		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-3UTR	ENST00000381683	ENST00000357162		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-intron	ENST00000381683	ENST00000355155		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-intron	ENST00000381683	ENST00000441350		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
5CDS-intron	ENST00000381683	ENST00000521932		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-3UTR	ENST00000406934	ENST00000395996		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-3UTR	ENST00000406934	ENST00000358544		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-3UTR	ENST00000406934	ENST00000357162		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-intron	ENST00000406934	ENST00000355155		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-intron	ENST00000406934	ENST00000441350		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-intron	ENST00000406934	ENST00000521932		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-3UTR	ENST00000476955	ENST00000395996		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-3UTR	ENST00000476955	ENST00000358544		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-3UTR	ENST00000476955	ENST00000357162		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-intron	ENST00000476955	ENST00000355155		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-intron	ENST00000476955	ENST00000441350		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
intron-intron	ENST00000476955	ENST00000521932		TCGA	LD	LUAD	TCGA-69-7979-01A	EIF3L	chr22	38251651	+	VPS13B	chr8	100861004	+
In-frame	ENST00000234160	ENST00000409885		TCGA	LD	LUAD	TCGA-69-7979-01A	GORASP2	chr2	171785913	+	ERICH2	chr2	171649373	+
3UTR-3CDS	ENST00000493692	ENST00000409885		TCGA	LD	LUAD	TCGA-69-7979-01A	GORASP2	chr2	171785913	+	ERICH2	chr2	171649373	+
5UTR-3CDS	ENST00000452526	ENST00000409885		TCGA	LD	LUAD	TCGA-69-7979-01A	GORASP2	chr2	171785913	+	ERICH2	chr2	171649373	+
5UTR-3CDS	ENST00000337530	ENST00000398805		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3CDS	ENST00000337530	ENST00000398803		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000337530	ENST00000488101		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000337530	ENST00000262542		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000337530	ENST00000539114		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3CDS	ENST00000374244	ENST00000398805		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3CDS	ENST00000374244	ENST00000398803		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000374244	ENST00000488101		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000374244	ENST00000262542		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000374244	ENST00000539114		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3CDS	ENST00000536272	ENST00000398805		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3CDS	ENST00000536272	ENST00000398803		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000536272	ENST00000488101		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000536272	ENST00000262542		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
5UTR-3UTR	ENST00000536272	ENST00000539114		TCGA	LD	LUAD	TCGA-69-7979-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115216293	+
In-frame	ENST00000341547	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000341547	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000341547	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000341547	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
In-frame	ENST00000357063	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000357063	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000357063	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000357063	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
In-frame	ENST00000377534	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000377534	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000377534	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000377534	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
In-frame	ENST00000321797	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000321797	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000321797	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000321797	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
In-frame	ENST00000526202	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000526202	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000526202	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000526202	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
In-frame	ENST00000465261	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000465261	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000465261	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000465261	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
intron-3CDS	ENST00000605961	ENST00000376180		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
intron-5UTR	ENST00000605961	ENST00000545560		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
intron-5UTR	ENST00000605961	ENST00000376162		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
intron-intron	ENST00000605961	ENST00000415285		TCGA	LD	LUAD	TCGA-69-7979-01A	LMO7	chr13	76412332	+	ITGBL1	chr13	102220050	+
5UTR-3CDS	ENST00000559717	ENST00000355112		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
5UTR-3CDS	ENST00000559717	ENST00000560509		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
5UTR-intron	ENST00000559717	ENST00000560136		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000360468	ENST00000355112		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000360468	ENST00000560509		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-intron	ENST00000360468	ENST00000560136		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000431652	ENST00000355112		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000431652	ENST00000560509		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-intron	ENST00000431652	ENST00000560136		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000430376	ENST00000355112		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000430376	ENST00000560509		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-intron	ENST00000430376	ENST00000560136		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000558538	ENST00000355112		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-3CDS	ENST00000558538	ENST00000560509		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
intron-intron	ENST00000558538	ENST00000560136		TCGA	LD	LUAD	TCGA-69-7979-01A	MAN2A2	chr15	91446662	+	BLM	chr15	91303377	+
In-frame	ENST00000215832	ENST00000317133		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000215832	ENST00000375741		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000215832	ENST00000375739		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000215832	ENST00000370623		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000215832	ENST00000544132		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000215832	ENST00000218789		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000215832	ENST00000375736		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000215832	ENST00000426073		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000215832	ENST00000375737		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000215832	ENST00000375723		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-intron	ENST00000215832	ENST00000478679		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-intron	ENST00000215832	ENST00000483189		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000398822	ENST00000317133		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000398822	ENST00000375741		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000398822	ENST00000375739		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000398822	ENST00000370623		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000398822	ENST00000544132		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000398822	ENST00000218789		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000398822	ENST00000375736		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000398822	ENST00000426073		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000398822	ENST00000375737		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000398822	ENST00000375723		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-intron	ENST00000398822	ENST00000478679		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-intron	ENST00000398822	ENST00000483189		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000544786	ENST00000317133		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000544786	ENST00000375741		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000544786	ENST00000375739		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
In-frame	ENST00000544786	ENST00000370623		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000544786	ENST00000544132		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000544786	ENST00000218789		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000544786	ENST00000375736		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000544786	ENST00000426073		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000544786	ENST00000375737		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-5UTR	ENST00000544786	ENST00000375723		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-intron	ENST00000544786	ENST00000478679		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5CDS-intron	ENST00000544786	ENST00000483189		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-3CDS	ENST00000491588	ENST00000317133		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-3CDS	ENST00000491588	ENST00000375741		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-3CDS	ENST00000491588	ENST00000375739		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-3CDS	ENST00000491588	ENST00000370623		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-5UTR	ENST00000491588	ENST00000544132		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-5UTR	ENST00000491588	ENST00000218789		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-5UTR	ENST00000491588	ENST00000375736		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-5UTR	ENST00000491588	ENST00000426073		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-5UTR	ENST00000491588	ENST00000375737		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-5UTR	ENST00000491588	ENST00000375723		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-intron	ENST00000491588	ENST00000478679		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
intron-intron	ENST00000491588	ENST00000483189		TCGA	LD	LUAD	TCGA-69-7979-01A	MAPK1	chr22	22221612	-	ARHGEF7	chr13	111870026	+
5UTR-intron	ENST00000340080	ENST00000529695		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000340080	ENST00000356115		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000340080	ENST00000430511		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000340080	ENST00000312575		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000340080	ENST00000418185		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000405785	ENST00000529695		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000405785	ENST00000356115		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000405785	ENST00000430511		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000405785	ENST00000312575		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5UTR-intron	ENST00000405785	ENST00000418185		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
intron-intron	ENST00000461907	ENST00000529695		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
intron-intron	ENST00000461907	ENST00000356115		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
intron-intron	ENST00000461907	ENST00000430511		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
intron-intron	ENST00000461907	ENST00000312575		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
intron-intron	ENST00000461907	ENST00000418185		TCGA	LD	LUAD	TCGA-69-7979-01A	MIOS	chr7	7607754	+	GTF2IRD2B	chr7	74536692	+
5CDS-5UTR	ENST00000608999	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000608999	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000608999	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000608999	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000336894	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000336894	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000336894	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000336894	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000480184	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000480184	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000480184	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000480184	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000356764	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000356764	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000356764	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5CDS-5UTR	ENST00000356764	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000290419	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000290419	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000290419	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000290419	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000391959	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000391959	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000391959	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000391959	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000367270	ENST00000367176		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000367270	ENST00000367177		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000367270	ENST00000496057		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
intron-5UTR	ENST00000367270	ENST00000367175		TCGA	LD	LUAD	TCGA-69-7979-01A	PPP1R12B	chr1	202318270	+	LRRN2	chr1	204589346	-
5UTR-3CDS	ENST00000498485	ENST00000373555		TCGA	LD	LUAD	TCGA-69-7979-01A	PSMB7	chr9	127146877	-	GOLGA1	chr9	127643536	-
In-frame	ENST00000259457	ENST00000373555		TCGA	LD	LUAD	TCGA-69-7979-01A	PSMB7	chr9	127146877	-	GOLGA1	chr9	127643536	-
3UTR-3CDS	ENST00000536392	ENST00000373555		TCGA	LD	LUAD	TCGA-69-7979-01A	PSMB7	chr9	127146877	-	GOLGA1	chr9	127643536	-
Frame-shit	ENST00000361084	ENST00000368346		TCGA	LD	LUAD	TCGA-69-7979-01A	RAB25	chr1	156031234	+	ASH1L	chr1	155452240	-
Frame-shit	ENST00000361084	ENST00000392403		TCGA	LD	LUAD	TCGA-69-7979-01A	RAB25	chr1	156031234	+	ASH1L	chr1	155452240	-
5CDS-3UTR	ENST00000361084	ENST00000548830		TCGA	LD	LUAD	TCGA-69-7979-01A	RAB25	chr1	156031234	+	ASH1L	chr1	155452240	-
3UTR-3CDS	ENST00000487325	ENST00000368346		TCGA	LD	LUAD	TCGA-69-7979-01A	RAB25	chr1	156031234	+	ASH1L	chr1	155452240	-
3UTR-3CDS	ENST00000487325	ENST00000392403		TCGA	LD	LUAD	TCGA-69-7979-01A	RAB25	chr1	156031234	+	ASH1L	chr1	155452240	-
3UTR-3UTR	ENST00000487325	ENST00000548830		TCGA	LD	LUAD	TCGA-69-7979-01A	RAB25	chr1	156031234	+	ASH1L	chr1	155452240	-
5CDS-3UTR	ENST00000274192	ENST00000329244		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000274192	ENST00000527434		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000537411	ENST00000329244		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000537411	ENST00000527434		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
3UTR-3UTR	ENST00000504286	ENST00000329244		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
3UTR-3UTR	ENST00000504286	ENST00000527434		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000538824	ENST00000329244		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
5CDS-3UTR	ENST00000538824	ENST00000527434		TCGA	LD	LUAD	TCGA-69-7979-01A	SRD5A1	chr5	6633982	+	WASIR2	chr16	72958	+
5CDS-intron	ENST00000434316	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-3UTR	ENST00000434316	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000434316	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-3UTR	ENST00000375391	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
5CDS-intron	ENST00000375391	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000375608		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000442652		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000375604		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000397030		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000535094		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000421756		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000375601		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-3UTR	ENST00000474393	ENST00000397036		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000434480		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000423482		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000375597		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000397024		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000480321		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-intron	ENST00000474393	ENST00000397021		TCGA	LD	LUAD	TCGA-69-7979-01A	TMCO3	chr13	114152820	+	MCF2L	chr13	113564224	+
3UTR-3CDS	ENST00000506646	ENST00000382084		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
3UTR-3CDS	ENST00000506646	ENST00000400234		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
3UTR-intron	ENST00000506646	ENST00000461833		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
3UTR-intron	ENST00000506646	ENST00000382086		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
Frame-shit	ENST00000507078	ENST00000382084		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
Frame-shit	ENST00000507078	ENST00000400234		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
5CDS-intron	ENST00000507078	ENST00000461833		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
5CDS-intron	ENST00000507078	ENST00000382086		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-3CDS	ENST00000338977	ENST00000382084		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-3CDS	ENST00000338977	ENST00000400234		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-intron	ENST00000338977	ENST00000461833		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-intron	ENST00000338977	ENST00000382086		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-3CDS	ENST00000511833	ENST00000382084		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-3CDS	ENST00000511833	ENST00000400234		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-intron	ENST00000511833	ENST00000461833		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
intron-intron	ENST00000511833	ENST00000382086		TCGA	LD	LUAD	TCGA-69-7979-01A	ZNF721	chr4	429559	-	RFPL3S	chr22	32764554	-
Frame-shit	ENST00000376020	ENST00000398000		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
5CDS-5UTR	ENST00000376020	ENST00000477281		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
5CDS-intron	ENST00000376020	ENST00000377934		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
Frame-shit	ENST00000289292	ENST00000398000		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
5CDS-5UTR	ENST00000289292	ENST00000477281		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
5CDS-intron	ENST00000289292	ENST00000377934		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
intron-3CDS	ENST00000483955	ENST00000398000		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
intron-5UTR	ENST00000483955	ENST00000477281		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
intron-intron	ENST00000483955	ENST00000377934		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
intron-3CDS	ENST00000460112	ENST00000398000		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
intron-5UTR	ENST00000460112	ENST00000477281		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
intron-intron	ENST00000460112	ENST00000377934		TCGA	LD	LUAD	TCGA-69-7980-01A	SHROOM4	chrX	50556902	-	CXorf36	chrX	45011237	-
In-frame	ENST00000360204	ENST00000380338		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000360204	ENST00000355930		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000360204	ENST00000429426		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000360204	ENST00000475957		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000360204	ENST00000380321		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
Frame-shit	ENST00000594534	ENST00000380338		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000594534	ENST00000355930		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000594534	ENST00000429426		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000594534	ENST00000475957		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000594534	ENST00000380321		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
Frame-shit	ENST00000344519	ENST00000380338		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000344519	ENST00000355930		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000344519	ENST00000429426		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000344519	ENST00000475957		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000344519	ENST00000380321		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
Frame-shit	ENST00000425625	ENST00000380338		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000425625	ENST00000355930		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-5UTR	ENST00000425625	ENST00000429426		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000425625	ENST00000475957		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
5CDS-intron	ENST00000425625	ENST00000380321		TCGA	LD	LUAD	TCGA-69-7980-01A	ZNF66	chr19	20976684	+	MLLT3	chr9	20448264	-
Frame-shit	ENST00000519937	ENST00000368395		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000338684		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000438413		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000457295		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000462215		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000368392		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000368393		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000368390		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000368396		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000343256		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000368398		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000368389		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000342482		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000519937	ENST00000337604		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
Frame-shit	ENST00000342375	ENST00000368395		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000338684		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000438413		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000457295		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000462215		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000368392		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000368393		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000368390		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000368396		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000343256		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000368398		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000368389		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000342482		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000342375	ENST00000337604		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
Frame-shit	ENST00000393822	ENST00000368395		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000338684		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000438413		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000457295		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000462215		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000368392		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000368393		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000368390		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000368396		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000343256		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000368398		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000368389		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000342482		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000393822	ENST00000337604		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
Frame-shit	ENST00000409383	ENST00000368395		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000338684		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000438413		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000457295		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000462215		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000368392		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000368393		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000368390		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000368396		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000343256		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000368398		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000368389		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000342482		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000409383	ENST00000337604		TCGA	LD	LUAD	TCGA-69-8253-01A	SFTPB	chr2	85892412	-	MUC1	chr1	155160707	-
5CDS-intron	ENST00000397927	ENST00000471446		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000397927	ENST00000222547		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000397927	ENST00000433727		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000397927	ENST00000425626		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000313669	ENST00000471446		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000313669	ENST00000222547		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000313669	ENST00000433727		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000313669	ENST00000425626		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000528707	ENST00000471446		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000528707	ENST00000222547		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000528707	ENST00000433727		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
5CDS-intron	ENST00000528707	ENST00000425626		TCGA	LD	LUAD	TCGA-69-8255-01A	COL26A1	chr7	101006471	+	BET1	chr7	93623697	-
In-frame	ENST00000262367	ENST00000398682		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
5CDS-3UTR	ENST00000262367	ENST00000569420		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
5CDS-5UTR	ENST00000262367	ENST00000568854		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
5CDS-intron	ENST00000262367	ENST00000398680		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
In-frame	ENST00000382070	ENST00000398682		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
5CDS-3UTR	ENST00000382070	ENST00000569420		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
5CDS-5UTR	ENST00000382070	ENST00000568854		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
5CDS-intron	ENST00000382070	ENST00000398680		TCGA	LD	LUAD	TCGA-69-8255-01A	CREBBP	chr16	3900298	-	TP53TG3	chr16	32685885	-
In-frame	ENST00000520810	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
5CDS-intron	ENST00000520810	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
In-frame	ENST00000416505	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
5CDS-intron	ENST00000416505	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
In-frame	ENST00000519735	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
5CDS-intron	ENST00000519735	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
In-frame	ENST00000520835	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
5CDS-intron	ENST00000520835	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-3CDS	ENST00000379708	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-intron	ENST00000379708	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-3CDS	ENST00000518983	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-intron	ENST00000518983	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-3CDS	ENST00000522147	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-intron	ENST00000522147	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-3CDS	ENST00000522785	ENST00000307599		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
intron-intron	ENST00000522785	ENST00000518826		TCGA	LD	LUAD	TCGA-69-8255-01A	IKBKB	chr8	42151030	+	GOT1L1	chr8	37796399	-
Frame-shit	ENST00000406337	ENST00000287263		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000406337	ENST00000330843		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000406337	ENST00000522727		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000406337	ENST00000523182		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000406337	ENST00000524118		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000265713	ENST00000287263		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000265713	ENST00000330843		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000265713	ENST00000522727		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000265713	ENST00000523182		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000265713	ENST00000524118		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000396930	ENST00000287263		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000396930	ENST00000330843		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000396930	ENST00000522727		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000396930	ENST00000523182		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000396930	ENST00000524118		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000485568	ENST00000287263		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000485568	ENST00000330843		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000485568	ENST00000522727		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000485568	ENST00000523182		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000485568	ENST00000524118		TCGA	LD	LUAD	TCGA-69-8255-01A	KAT6A	chr8	41905896	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000264883	ENST00000264888		TCGA	LD	LUAD	TCGA-69-8255-01A	NUP54	chr4	77045802	-	CXCL9	chr4	76927427	-
intron-3CDS	ENST00000342467	ENST00000264888		TCGA	LD	LUAD	TCGA-69-8255-01A	NUP54	chr4	77045802	-	CXCL9	chr4	76927427	-
Frame-shit	ENST00000514987	ENST00000264888		TCGA	LD	LUAD	TCGA-69-8255-01A	NUP54	chr4	77045802	-	CXCL9	chr4	76927427	-
Frame-shit	ENST00000458189	ENST00000264888		TCGA	LD	LUAD	TCGA-69-8255-01A	NUP54	chr4	77045802	-	CXCL9	chr4	76927427	-
intron-3CDS	ENST00000515460	ENST00000264888		TCGA	LD	LUAD	TCGA-69-8255-01A	NUP54	chr4	77045802	-	CXCL9	chr4	76927427	-
Frame-shit	ENST00000264896	ENST00000395748		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
Frame-shit	ENST00000264896	ENST00000264487		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
Frame-shit	ENST00000264896	ENST00000502307		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
5CDS-intron	ENST00000264896	ENST00000511560		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
Frame-shit	ENST00000452464	ENST00000395748		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
Frame-shit	ENST00000452464	ENST00000264487		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
Frame-shit	ENST00000452464	ENST00000502307		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
5CDS-intron	ENST00000452464	ENST00000511560		TCGA	LD	LUAD	TCGA-69-8255-01A	SCARB2	chr4	77134580	-	AREG	chr4	75312251	+
In-frame	ENST00000389327	ENST00000333957		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389327	ENST00000446597		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389327	ENST00000536386		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389327	ENST00000396028		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389327	ENST00000542676		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-5UTR	ENST00000389327	ENST00000544930		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-5UTR	ENST00000389327	ENST00000545552		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-intron	ENST00000389327	ENST00000540703		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389328	ENST00000333957		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389328	ENST00000446597		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389328	ENST00000536386		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389328	ENST00000396028		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000389328	ENST00000542676		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-5UTR	ENST00000389328	ENST00000544930		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-5UTR	ENST00000389328	ENST00000545552		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-intron	ENST00000389328	ENST00000540703		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000438773	ENST00000333957		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000438773	ENST00000446597		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000438773	ENST00000536386		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000438773	ENST00000396028		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000438773	ENST00000542676		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-5UTR	ENST00000438773	ENST00000544930		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-5UTR	ENST00000438773	ENST00000545552		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
5CDS-intron	ENST00000438773	ENST00000540703		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-3CDS	ENST00000522504	ENST00000333957		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-3CDS	ENST00000522504	ENST00000446597		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-3CDS	ENST00000522504	ENST00000536386		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-3CDS	ENST00000522504	ENST00000396028		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-3CDS	ENST00000522504	ENST00000542676		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-5UTR	ENST00000522504	ENST00000544930		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-5UTR	ENST00000522504	ENST00000545552		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
intron-intron	ENST00000522504	ENST00000540703		TCGA	LD	LUAD	TCGA-69-8255-01A	TRAPPC9	chr8	141407719	-	C2CD5	chr12	22680826	-
In-frame	ENST00000280979	ENST00000298130		TCGA	LD	LUAD	TCGA-69-A59K-01A	AKAP6	chr14	32903023	+	SPTSSA	chr14	34904510	-
In-frame	ENST00000557354	ENST00000298130		TCGA	LD	LUAD	TCGA-69-A59K-01A	AKAP6	chr14	32903023	+	SPTSSA	chr14	34904510	-
In-frame	ENST00000557272	ENST00000298130		TCGA	LD	LUAD	TCGA-69-A59K-01A	AKAP6	chr14	32903023	+	SPTSSA	chr14	34904510	-
3UTR-3CDS	ENST00000554449	ENST00000298130		TCGA	LD	LUAD	TCGA-69-A59K-01A	AKAP6	chr14	32903023	+	SPTSSA	chr14	34904510	-
5CDS-3UTR	ENST00000315183	ENST00000311620		TCGA	LD	LUAD	TCGA-69-A59K-01A	TNRC6A	chr16	24802355	+	ANKS4B	chr16	21262929	+
intron-3UTR	ENST00000562829	ENST00000311620		TCGA	LD	LUAD	TCGA-69-A59K-01A	TNRC6A	chr16	24802355	+	ANKS4B	chr16	21262929	+
5CDS-3UTR	ENST00000395799	ENST00000311620		TCGA	LD	LUAD	TCGA-69-A59K-01A	TNRC6A	chr16	24802355	+	ANKS4B	chr16	21262929	+
intron-3UTR	ENST00000432286	ENST00000311620		TCGA	LD	LUAD	TCGA-69-A59K-01A	TNRC6A	chr16	24802355	+	ANKS4B	chr16	21262929	+
5UTR-3CDS	ENST00000588723	ENST00000360761		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000354983		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000352832		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000442258		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000416767		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000502264		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000515411		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000510115		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000503485		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000515165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000507510		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000514181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000515765		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000507336		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000514079		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000507896		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000512389		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000513689		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000513964		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000505165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000507609		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000514717		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000510366		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000429973		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000359106		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000588723	ENST00000358244		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000360761		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000354983		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000352832		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000442258		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000416767		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000502264		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000515411		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000510115		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000503485		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000515165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000507510		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000514181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000515765		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000507336		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000514079		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000507896		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000512389		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000513689		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000513964		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000505165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000507609		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000514717		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000510366		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000429973		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000359106		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000356958	ENST00000358244		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000360761		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000354983		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000352832		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000442258		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000416767		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000502264		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000515411		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000510115		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000503485		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000515165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000507510		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000514181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000515765		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000507336		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000514079		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000507896		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000512389		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000513689		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000513964		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000505165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000507609		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000514717		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000510366		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000429973		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000359106		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000292841	ENST00000358244		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000360761		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000354983		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000352832		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000442258		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000416767		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000502264		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000515411		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000510115		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000503485		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000515165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000507510		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000514181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000515765		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000507336		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000514079		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000507896		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000512389		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000513689		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000513964		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000505165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000507609		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000514717		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000510366		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000429973		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000359106		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000392157	ENST00000358244		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000360761		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000354983		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000352832		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000442258		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000416767		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000502264		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000515411		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000510115		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000503485		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000515165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000507510		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000514181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000515765		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000507336		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000514079		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000507896		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000512389		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000513689		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000513964		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000505165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000507609		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000514717		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000510366		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000429973		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000359106		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
5UTR-3CDS	ENST00000355533	ENST00000358244		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000360761		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000354983		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000352832		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000442258		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000416767		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000502264		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000515411		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000510115		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000503485		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000515165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000507510		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000514181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000515765		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000507336		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000514079		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000507896		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000512389		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000513689		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000513964		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000505165		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000507609		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000514717		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000510366		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000429973		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000359106		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000588354	ENST00000358244		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF585A	chr19	37660741	-	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000601935	ENST00000357654		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000601935	ENST00000351666		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000309486		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000346315		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000354071		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000352993		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000468300		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000591534		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000591849		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000586385		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000493795		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000471181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601935	ENST00000491747		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000600313	ENST00000357654		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000600313	ENST00000351666		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000309486		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000346315		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000354071		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000352993		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000468300		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000591534		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000591849		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000586385		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000493795		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000471181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000600313	ENST00000491747		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000596211	ENST00000357654		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000596211	ENST00000351666		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000309486		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000346315		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000354071		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000352993		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000468300		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000591534		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000591849		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000586385		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000493795		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000471181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000596211	ENST00000491747		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000359788	ENST00000357654		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000359788	ENST00000351666		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000309486		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000346315		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000354071		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000352993		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000468300		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000591534		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000591849		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000586385		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000493795		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000471181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000359788	ENST00000491747		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000601010	ENST00000357654		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000601010	ENST00000351666		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000309486		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000346315		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000354071		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000352993		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000468300		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000591534		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000591849		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000586385		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000493795		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000471181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000601010	ENST00000491747		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000599168	ENST00000357654		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000599168	ENST00000351666		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000309486		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000346315		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000354071		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000352993		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000468300		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000591534		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000591849		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000586385		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000493795		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000471181		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
5CDS-intron	ENST00000599168	ENST00000491747		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF675	chr19	23869833	-	BRCA1	chr17	41267796	-
Frame-shit	ENST00000539915	ENST00000382865		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
Frame-shit	ENST00000539915	ENST00000511885		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
5CDS-intron	ENST00000539915	ENST00000515357		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
Frame-shit	ENST00000316491	ENST00000382865		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
Frame-shit	ENST00000316491	ENST00000511885		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
5CDS-intron	ENST00000316491	ENST00000515357		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
3UTR-3CDS	ENST00000531864	ENST00000382865		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
3UTR-3CDS	ENST00000531864	ENST00000511885		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
3UTR-intron	ENST00000531864	ENST00000515357		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
Frame-shit	ENST00000399681	ENST00000382865		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
Frame-shit	ENST00000399681	ENST00000511885		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
5CDS-intron	ENST00000399681	ENST00000515357		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
In-frame	ENST00000398696	ENST00000382865		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
In-frame	ENST00000398696	ENST00000511885		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
5CDS-intron	ENST00000398696	ENST00000515357		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
intron-3CDS	ENST00000534369	ENST00000382865		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
intron-3CDS	ENST00000534369	ENST00000511885		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
intron-intron	ENST00000534369	ENST00000515357		TCGA	LD	LUAD	TCGA-69-A59K-01A	ZNF720	chr16	31765221	+	POLN	chr4	2133017	-
Frame-shit	ENST00000296218	ENST00000370620		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000296218	ENST00000370622		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000296218	ENST00000250617		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
Frame-shit	ENST00000296218	ENST00000535227		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000541606	ENST00000370620		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000541606	ENST00000370622		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000541606	ENST00000250617		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000541606	ENST00000535227		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000370620		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000370622		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000250617		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
intron-3CDS	ENST00000497858	ENST00000535227		TCGA	LD	LUAD	TCGA-71-8520-01A	DNALI1	chr1	38025097	+	ARHGEF6	chrX	135790929	-
5CDS-5UTR	ENST00000372259	ENST00000535601		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5CDS-5UTR	ENST00000372259	ENST00000218364		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5CDS-5UTR	ENST00000372257	ENST00000535601		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5CDS-5UTR	ENST00000372257	ENST00000218364		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5CDS-5UTR	ENST00000537474	ENST00000535601		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5CDS-5UTR	ENST00000537474	ENST00000218364		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5UTR-5UTR	ENST00000495828	ENST00000535601		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
5UTR-5UTR	ENST00000495828	ENST00000218364		TCGA	LD	LUAD	TCGA-71-8520-01A	ERI3	chr1	44773982	-	HTATSF1	chrX	135579783	+
intron-3CDS	ENST00000341885	ENST00000372259		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
intron-3CDS	ENST00000341885	ENST00000372257		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
intron-3CDS	ENST00000341885	ENST00000537474		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
intron-5UTR	ENST00000341885	ENST00000495828		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
Frame-shit	ENST00000468695	ENST00000372259		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
Frame-shit	ENST00000468695	ENST00000372257		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
Frame-shit	ENST00000468695	ENST00000537474		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5CDS-5UTR	ENST00000468695	ENST00000495828		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5UTR-3CDS	ENST00000492007	ENST00000372259		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5UTR-3CDS	ENST00000492007	ENST00000372257		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5UTR-3CDS	ENST00000492007	ENST00000537474		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5UTR-5UTR	ENST00000492007	ENST00000495828		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
Frame-shit	ENST00000373501	ENST00000372259		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
Frame-shit	ENST00000373501	ENST00000372257		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
Frame-shit	ENST00000373501	ENST00000537474		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5CDS-5UTR	ENST00000373501	ENST00000495828		TCGA	LD	LUAD	TCGA-71-8520-01A	ZBTB8OS	chr1	33093109	-	ERI3	chr1	44750579	-
5CDS-intron	ENST00000355221	ENST00000396401		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000355221	ENST00000521604		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000355221	ENST00000521086		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000355221	ENST00000522635		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000355221	ENST00000520534		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000355221	ENST00000518784		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000520188	ENST00000396401		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000520188	ENST00000521604		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000520188	ENST00000521086		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000520188	ENST00000522635		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000520188	ENST00000520534		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000520188	ENST00000518784		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000359530	ENST00000396401		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000359530	ENST00000521604		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000359530	ENST00000521086		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000359530	ENST00000522635		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000359530	ENST00000520534		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000359530	ENST00000518784		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-intron	ENST00000523899	ENST00000396401		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-intron	ENST00000523899	ENST00000521604		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-5UTR	ENST00000523899	ENST00000521086		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-5UTR	ENST00000523899	ENST00000522635		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-5UTR	ENST00000523899	ENST00000520534		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-5UTR	ENST00000523899	ENST00000518784		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000396774	ENST00000396401		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-intron	ENST00000396774	ENST00000521604		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000396774	ENST00000521086		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000396774	ENST00000522635		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000396774	ENST00000520534		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
5CDS-5UTR	ENST00000396774	ENST00000518784		TCGA	LD	LUAD	TCGA-73-4659-01A	ATP6V1H	chr8	54742004	-	TCEA1	chr8	54923052	-
intron-3CDS	ENST00000399262	ENST00000565468		TCGA	LD	LUAD	TCGA-73-4668-01A	JMJD1C	chr10	65281498	-	TMEM178B	chr7	140912391	+
intron-3CDS	ENST00000402544	ENST00000565468		TCGA	LD	LUAD	TCGA-73-4668-01A	JMJD1C	chr10	65281498	-	TMEM178B	chr7	140912391	+
intron-3CDS	ENST00000399251	ENST00000565468		TCGA	LD	LUAD	TCGA-73-4668-01A	JMJD1C	chr10	65281498	-	TMEM178B	chr7	140912391	+
intron-3CDS	ENST00000542921	ENST00000565468		TCGA	LD	LUAD	TCGA-73-4668-01A	JMJD1C	chr10	65281498	-	TMEM178B	chr7	140912391	+
intron-3CDS	ENST00000489372	ENST00000565468		TCGA	LD	LUAD	TCGA-73-4668-01A	JMJD1C	chr10	65281498	-	TMEM178B	chr7	140912391	+
5CDS-3UTR	ENST00000337233	ENST00000537532		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000337233	ENST00000539644		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000337233	ENST00000392404		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000337233	ENST00000538932		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000337233	ENST00000337815		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-3UTR	ENST00000359949	ENST00000537532		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000359949	ENST00000539644		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000359949	ENST00000392404		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000359949	ENST00000538932		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000359949	ENST00000337815		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
3UTR-3UTR	ENST00000540930	ENST00000537532		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
3UTR-5UTR	ENST00000540930	ENST00000539644		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
3UTR-5UTR	ENST00000540930	ENST00000392404		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
3UTR-5UTR	ENST00000540930	ENST00000538932		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
3UTR-5UTR	ENST00000540930	ENST00000337815		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-3UTR	ENST00000541532	ENST00000537532		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000541532	ENST00000539644		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000541532	ENST00000392404		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000541532	ENST00000538932		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5CDS-5UTR	ENST00000541532	ENST00000337815		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5UTR-3UTR	ENST00000543171	ENST00000537532		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000543171	ENST00000539644		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000543171	ENST00000392404		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000543171	ENST00000538932		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
5UTR-5UTR	ENST00000543171	ENST00000337815		TCGA	LD	LUAD	TCGA-73-4668-01A	P2RX4	chr12	121648101	+	ZNF664	chr12	124495928	+
3UTR-3CDS	ENST00000537532	ENST00000261182		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-3CDS	ENST00000537532	ENST00000393263		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-3CDS	ENST00000537532	ENST00000431879		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-3CDS	ENST00000537532	ENST00000547773		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-5UTR	ENST00000537532	ENST00000544816		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-5UTR	ENST00000537532	ENST00000542344		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-5UTR	ENST00000537532	ENST00000535020		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-5UTR	ENST00000537532	ENST00000549596		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-intron	ENST00000537532	ENST00000547993		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-intron	ENST00000537532	ENST00000552342		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
3UTR-intron	ENST00000537532	ENST00000548044		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000539644	ENST00000261182		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000539644	ENST00000393263		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000539644	ENST00000431879		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000539644	ENST00000547773		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000539644	ENST00000544816		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000539644	ENST00000542344		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000539644	ENST00000535020		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000539644	ENST00000549596		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000539644	ENST00000547993		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000539644	ENST00000552342		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000539644	ENST00000548044		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000392404	ENST00000261182		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000392404	ENST00000393263		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000392404	ENST00000431879		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000392404	ENST00000547773		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000392404	ENST00000544816		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000392404	ENST00000542344		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000392404	ENST00000535020		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000392404	ENST00000549596		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000392404	ENST00000547993		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000392404	ENST00000552342		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000392404	ENST00000548044		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000538932	ENST00000261182		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000538932	ENST00000393263		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000538932	ENST00000431879		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000538932	ENST00000547773		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000538932	ENST00000544816		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000538932	ENST00000542344		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000538932	ENST00000535020		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000538932	ENST00000549596		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000538932	ENST00000547993		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000538932	ENST00000552342		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000538932	ENST00000548044		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000337815	ENST00000261182		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000337815	ENST00000393263		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000337815	ENST00000431879		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-3CDS	ENST00000337815	ENST00000547773		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000337815	ENST00000544816		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000337815	ENST00000542344		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000337815	ENST00000535020		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-5UTR	ENST00000337815	ENST00000549596		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000337815	ENST00000547993		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000337815	ENST00000552342		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5UTR-intron	ENST00000337815	ENST00000548044		TCGA	LD	LUAD	TCGA-73-4668-01A	ZNF664	chr12	124472685	+	NAP1L1	chr12	76454059	-
5CDS-intron	ENST00000315127	ENST00000528089		TCGA	LD	LUAD	TCGA-73-4670-01A	EDC3	chr15	74963796	-	FAM86C2P	chr11	67566946	-
5CDS-intron	ENST00000426797	ENST00000528089		TCGA	LD	LUAD	TCGA-73-4670-01A	EDC3	chr15	74963796	-	FAM86C2P	chr11	67566946	-
5CDS-intron	ENST00000568176	ENST00000528089		TCGA	LD	LUAD	TCGA-73-4670-01A	EDC3	chr15	74963796	-	FAM86C2P	chr11	67566946	-
intron-intron	ENST00000562047	ENST00000528089		TCGA	LD	LUAD	TCGA-73-4670-01A	EDC3	chr15	74963796	-	FAM86C2P	chr11	67566946	-
intron-3CDS	ENST00000396659	ENST00000261867		TCGA	LD	LUAD	TCGA-73-4676-01A	GATM	chr15	45694097	-	SLC30A4	chr15	45783079	-
intron-intron	ENST00000396659	ENST00000559667		TCGA	LD	LUAD	TCGA-73-4676-01A	GATM	chr15	45694097	-	SLC30A4	chr15	45783079	-
intron-3CDS	ENST00000558336	ENST00000261867		TCGA	LD	LUAD	TCGA-73-4676-01A	GATM	chr15	45694097	-	SLC30A4	chr15	45783079	-
intron-intron	ENST00000558336	ENST00000559667		TCGA	LD	LUAD	TCGA-73-4676-01A	GATM	chr15	45694097	-	SLC30A4	chr15	45783079	-
5UTR-3CDS	ENST00000458245	ENST00000261867		TCGA	LD	LUAD	TCGA-73-4676-01A	GATM	chr15	45694097	-	SLC30A4	chr15	45783079	-
5UTR-intron	ENST00000458245	ENST00000559667		TCGA	LD	LUAD	TCGA-73-4676-01A	GATM	chr15	45694097	-	SLC30A4	chr15	45783079	-
Frame-shit	ENST00000359314	ENST00000489301		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
Frame-shit	ENST00000359314	ENST00000371211		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
Frame-shit	ENST00000359314	ENST00000393699		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
5CDS-3UTR	ENST00000359314	ENST00000244799		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
intron-3CDS	ENST00000486693	ENST00000489301		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
intron-3CDS	ENST00000486693	ENST00000371211		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
intron-3CDS	ENST00000486693	ENST00000393699		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
intron-3UTR	ENST00000486693	ENST00000244799		TCGA	LD	LUAD	TCGA-73-4677-01A	CD2AP	chr6	47512442	+	OPN5	chr6	47779410	+
Frame-shit	ENST00000418919	ENST00000228606		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
5CDS-intron	ENST00000418919	ENST00000546496		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
Frame-shit	ENST00000258145	ENST00000228606		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
5CDS-intron	ENST00000258145	ENST00000546496		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
Frame-shit	ENST00000543646	ENST00000228606		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
5CDS-intron	ENST00000543646	ENST00000546496		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
Frame-shit	ENST00000542058	ENST00000228606		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
5CDS-intron	ENST00000542058	ENST00000546496		TCGA	LD	LUAD	TCGA-75-5122-01A	GNS	chr12	65113802	-	CYP27B1	chr12	58157038	-
In-frame	ENST00000311936	ENST00000340749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000311936	ENST00000543909		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000311936	ENST00000431042		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000311936	ENST00000542505		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000311936	ENST00000396589		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000311936	ENST00000535295		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000311936	ENST00000539924		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000311936	ENST00000542546		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000311936	ENST00000544749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000557334	ENST00000340749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000557334	ENST00000543909		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000557334	ENST00000431042		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000557334	ENST00000542505		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000557334	ENST00000396589		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000557334	ENST00000535295		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000557334	ENST00000539924		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000557334	ENST00000542546		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000557334	ENST00000544749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000256078	ENST00000340749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000256078	ENST00000543909		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
In-frame	ENST00000256078	ENST00000431042		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000256078	ENST00000542505		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000256078	ENST00000396589		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000256078	ENST00000535295		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000256078	ENST00000539924		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000256078	ENST00000542546		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000256078	ENST00000544749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
Frame-shit	ENST00000556131	ENST00000340749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
Frame-shit	ENST00000556131	ENST00000543909		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
Frame-shit	ENST00000556131	ENST00000431042		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000556131	ENST00000542505		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000556131	ENST00000396589		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000556131	ENST00000535295		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000556131	ENST00000539924		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-5UTR	ENST00000556131	ENST00000542546		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5CDS-intron	ENST00000556131	ENST00000544749		TCGA	LD	LUAD	TCGA-75-5122-01A	KRAS	chr12	25398208	-	SLC2A14	chr12	7985410	-
5UTR-3CDS	ENST00000380121	ENST00000378654		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
5UTR-3CDS	ENST00000380121	ENST00000544100		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
5UTR-3CDS	ENST00000380121	ENST00000534875		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
5UTR-3CDS	ENST00000380121	ENST00000543413		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
5UTR-intron	ENST00000380121	ENST00000497202		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000504114	ENST00000378654		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000504114	ENST00000544100		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000504114	ENST00000534875		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000504114	ENST00000543413		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-intron	ENST00000504114	ENST00000497202		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000357505	ENST00000378654		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000357505	ENST00000544100		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000357505	ENST00000534875		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000357505	ENST00000543413		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-intron	ENST00000357505	ENST00000497202		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000399396	ENST00000378654		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000399396	ENST00000544100		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000399396	ENST00000534875		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000399396	ENST00000543413		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-intron	ENST00000399396	ENST00000497202		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000446957	ENST00000378654		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000446957	ENST00000544100		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000446957	ENST00000534875		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-3CDS	ENST00000446957	ENST00000543413		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
3UTR-intron	ENST00000446957	ENST00000497202		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
intron-3CDS	ENST00000267068	ENST00000378654		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
intron-3CDS	ENST00000267068	ENST00000544100		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
intron-3CDS	ENST00000267068	ENST00000534875		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
intron-3CDS	ENST00000267068	ENST00000543413		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
intron-intron	ENST00000267068	ENST00000497202		TCGA	LD	LUAD	TCGA-75-5122-01A	N4BP2L2	chr13	33010498	-	SUCLA2	chr13	48517580	-
Frame-shit	ENST00000274192	ENST00000274181		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-intron	ENST00000274192	ENST00000511368		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-intron	ENST00000274192	ENST00000513709		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
Frame-shit	ENST00000537411	ENST00000274181		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-intron	ENST00000537411	ENST00000511368		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-intron	ENST00000537411	ENST00000513709		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
3UTR-3CDS	ENST00000504286	ENST00000274181		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
3UTR-intron	ENST00000504286	ENST00000511368		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
3UTR-intron	ENST00000504286	ENST00000513709		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
Frame-shit	ENST00000538824	ENST00000274181		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-intron	ENST00000538824	ENST00000511368		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-intron	ENST00000538824	ENST00000513709		TCGA	LD	LUAD	TCGA-75-5122-01A	SRD5A1	chr5	6633982	+	ADAMTS16	chr5	5303685	+
5CDS-5UTR	ENST00000247843	ENST00000389032		TCGA	LD	LUAD	TCGA-75-5122-01A	YEATS4	chr12	69756687	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000247843	ENST00000539577		TCGA	LD	LUAD	TCGA-75-5122-01A	YEATS4	chr12	69756687	+	STK38L	chr12	27450643	+
5CDS-5UTR	ENST00000548020	ENST00000389032		TCGA	LD	LUAD	TCGA-75-5122-01A	YEATS4	chr12	69756687	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000548020	ENST00000539577		TCGA	LD	LUAD	TCGA-75-5122-01A	YEATS4	chr12	69756687	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000394670	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000341711	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000333942		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000358365		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000583994		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000545287		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000354266		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000394692		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000581094		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000580976		TCGA	LD	LUAD	TCGA-75-5126-01A	ZNF207	chr17	30690003	+	RHOT1	chr17	30580104	+
In-frame	ENST00000415912	ENST00000374399		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
5CDS-5UTR	ENST00000415912	ENST00000003912		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
5CDS-5UTR	ENST00000415912	ENST00000358028		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
5CDS-5UTR	ENST00000415912	ENST00000339255		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
5CDS-5UTR	ENST00000415912	ENST00000428131		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
5CDS-intron	ENST00000415912	ENST00000488155		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-3CDS	ENST00000357071	ENST00000374399		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000357071	ENST00000003912		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000357071	ENST00000358028		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000357071	ENST00000339255		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000357071	ENST00000428131		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-intron	ENST00000357071	ENST00000488155		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-3CDS	ENST00000374893	ENST00000374399		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000374893	ENST00000003912		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000374893	ENST00000358028		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000374893	ENST00000339255		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000374893	ENST00000428131		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-intron	ENST00000374893	ENST00000488155		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-3CDS	ENST00000436918	ENST00000374399		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000436918	ENST00000003912		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000436918	ENST00000358028		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000436918	ENST00000339255		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000436918	ENST00000428131		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-intron	ENST00000436918	ENST00000488155		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-3CDS	ENST00000264205	ENST00000374399		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000264205	ENST00000003912		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000264205	ENST00000358028		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000264205	ENST00000339255		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000264205	ENST00000428131		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-intron	ENST00000264205	ENST00000488155		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-3CDS	ENST00000528294	ENST00000374399		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000528294	ENST00000003912		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000528294	ENST00000358028		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000528294	ENST00000339255		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-5UTR	ENST00000528294	ENST00000428131		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
intron-intron	ENST00000528294	ENST00000488155		TCGA	LD	LUAD	TCGA-75-5147-01A	ECE1	chr1	21671869	-	NIPAL3	chr1	24766662	+
Frame-shit	ENST00000265109	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000265109	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000265109	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
Frame-shit	ENST00000512629	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000512629	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000512629	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
Frame-shit	ENST00000428746	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000428746	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000428746	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
Frame-shit	ENST00000503673	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000503673	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5CDS-intron	ENST00000503673	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5UTR-3CDS	ENST00000515799	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5UTR-intron	ENST00000515799	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
5UTR-intron	ENST00000515799	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-3CDS	ENST00000506376	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000506376	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000506376	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-3CDS	ENST00000507276	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000507276	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000507276	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-3CDS	ENST00000397449	ENST00000325885		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000397449	ENST00000257621		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
intron-intron	ENST00000397449	ENST00000428113		TCGA	LD	LUAD	TCGA-75-5147-01A	RAI14	chr5	34687060	+	ASB4	chr7	95157125	+
In-frame	ENST00000265965	ENST00000592179		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
In-frame	ENST00000265965	ENST00000322980		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
Frame-shit	ENST00000265965	ENST00000585908		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
In-frame	ENST00000265965	ENST00000284207		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
5CDS-intron	ENST00000265965	ENST00000586511		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000592179		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000322980		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000585908		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000528200	ENST00000284207		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-intron	ENST00000528200	ENST00000586511		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000592179		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000322980		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000585908		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532265	ENST00000284207		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-intron	ENST00000532265	ENST00000586511		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000592179		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000322980		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000585908		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000532212	ENST00000284207		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
intron-intron	ENST00000532212	ENST00000586511		TCGA	LD	LUAD	TCGA-75-5147-01A	SERGEF	chr11	17981017	-	ANKRD29	chr18	21229157	-
Frame-shit	ENST00000447399	ENST00000396604		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000396602		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000530463		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000396597		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000447399	ENST00000299606		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000396604		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000396602		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000530463		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000396597		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
Frame-shit	ENST00000318950	ENST00000299606		TCGA	LD	LUAD	TCGA-75-5147-01A	SWAP70	chr11	9685825	+	ZNF143	chr11	9522638	+
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	LUAD	TCGA-75-6203-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	LUAD	TCGA-75-6203-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-3UTR	ENST00000314888	ENST00000519937		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000314888	ENST00000342375		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000314888	ENST00000393822		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000314888	ENST00000409383		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000540444	ENST00000519937		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000540444	ENST00000342375		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000540444	ENST00000393822		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000540444	ENST00000409383		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000464379	ENST00000519937		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000464379	ENST00000342375		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-3UTR	ENST00000464379	ENST00000393822		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000464379	ENST00000409383		TCGA	LD	LUAD	TCGA-75-6206-01A	TLN1	chr9	35703557	-	SFTPB	chr2	85886805	-
5CDS-intron	ENST00000264930	ENST00000515518		TCGA	LD	LUAD	TCGA-75-6207-01A	SLC12A7	chr5	1057586	-	TMEM232	chr5	109668626	-
5CDS-intron	ENST00000264930	ENST00000429839		TCGA	LD	LUAD	TCGA-75-6207-01A	SLC12A7	chr5	1057586	-	TMEM232	chr5	109668626	-
5CDS-intron	ENST00000264930	ENST00000455884		TCGA	LD	LUAD	TCGA-75-6207-01A	SLC12A7	chr5	1057586	-	TMEM232	chr5	109668626	-
5CDS-5UTR	ENST00000263228	ENST00000377996		TCGA	LD	LUAD	TCGA-75-6207-01A	UBE2R2	chr9	33817932	+	TMEM8B	chr9	35841131	+
5CDS-5UTR	ENST00000263228	ENST00000439587		TCGA	LD	LUAD	TCGA-75-6207-01A	UBE2R2	chr9	33817932	+	TMEM8B	chr9	35841131	+
5CDS-5UTR	ENST00000263228	ENST00000377991		TCGA	LD	LUAD	TCGA-75-6207-01A	UBE2R2	chr9	33817932	+	TMEM8B	chr9	35841131	+
5CDS-intron	ENST00000263228	ENST00000473947		TCGA	LD	LUAD	TCGA-75-6207-01A	UBE2R2	chr9	33817932	+	TMEM8B	chr9	35841131	+
5CDS-5UTR	ENST00000263228	ENST00000377988		TCGA	LD	LUAD	TCGA-75-6207-01A	UBE2R2	chr9	33817932	+	TMEM8B	chr9	35841131	+
5UTR-5UTR	ENST00000373233	ENST00000381297		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
5UTR-5UTR	ENST00000373233	ENST00000460672		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
5UTR-5UTR	ENST00000309279	ENST00000381297		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
5UTR-5UTR	ENST00000309279	ENST00000460672		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
5UTR-5UTR	ENST00000373222	ENST00000381297		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
5UTR-5UTR	ENST00000373222	ENST00000460672		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
intron-5UTR	ENST00000480022	ENST00000381297		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
intron-5UTR	ENST00000480022	ENST00000460672		TCGA	LD	LUAD	TCGA-75-6211-01A	CHD6	chr20	40246979	-	P2RY8	chrY	1535475	-
5UTR-3CDS	ENST00000228515	ENST00000311966		TCGA	LD	LUAD	TCGA-75-6211-01A	CSRNP2	chr12	51477122	-	GLS2	chr12	56874171	-
5UTR-intron	ENST00000228515	ENST00000476991		TCGA	LD	LUAD	TCGA-75-6211-01A	CSRNP2	chr12	51477122	-	GLS2	chr12	56874171	-
5UTR-intron	ENST00000228515	ENST00000539272		TCGA	LD	LUAD	TCGA-75-6211-01A	CSRNP2	chr12	51477122	-	GLS2	chr12	56874171	-
5UTR-3CDS	ENST00000550461	ENST00000311966		TCGA	LD	LUAD	TCGA-75-6211-01A	CSRNP2	chr12	51477122	-	GLS2	chr12	56874171	-
5UTR-intron	ENST00000550461	ENST00000476991		TCGA	LD	LUAD	TCGA-75-6211-01A	CSRNP2	chr12	51477122	-	GLS2	chr12	56874171	-
5UTR-intron	ENST00000550461	ENST00000539272		TCGA	LD	LUAD	TCGA-75-6211-01A	CSRNP2	chr12	51477122	-	GLS2	chr12	56874171	-
5CDS-5UTR	ENST00000533050	ENST00000227495		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000533050	ENST00000444328		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000533050	ENST00000356132		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000533050	ENST00000530591		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000533050	ENST00000534083		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000533050	ENST00000392669		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-3UTR	ENST00000533050	ENST00000526756		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000533050	ENST00000526727		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000533050	ENST00000449406		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000533050	ENST00000532243		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000533050	ENST00000534457		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000227495		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000444328		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000356132		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000530591		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000534083		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000392669		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-3UTR	ENST00000525728	ENST00000526756		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-5UTR	ENST00000525728	ENST00000526727		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-intron	ENST00000525728	ENST00000449406		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-intron	ENST00000525728	ENST00000532243		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
3UTR-intron	ENST00000525728	ENST00000534457		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000227495		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000444328		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000356132		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000530591		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000534083		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000392669		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-3UTR	ENST00000529731	ENST00000526756		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000529731	ENST00000526727		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000529731	ENST00000449406		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000529731	ENST00000532243		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000529731	ENST00000534457		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000227495		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000444328		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000356132		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000530591		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000534083		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000392669		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-3UTR	ENST00000360194	ENST00000526756		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000360194	ENST00000526727		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000360194	ENST00000449406		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000360194	ENST00000532243		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000360194	ENST00000534457		TCGA	LD	LUAD	TCGA-75-6211-01A	FAM118B	chr11	126110939	+	ST3GAL4	chr11	126275991	+
In-frame	ENST00000284719	ENST00000286063		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
In-frame	ENST00000284719	ENST00000358450		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000284719	ENST00000450799		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000284719	ENST00000409504		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000284719	ENST00000389683		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000284719	ENST00000449286		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000284719	ENST00000497003		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-3CDS	ENST00000344357	ENST00000286063		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-3CDS	ENST00000344357	ENST00000358450		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-intron	ENST00000344357	ENST00000450799		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-intron	ENST00000344357	ENST00000409504		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-intron	ENST00000344357	ENST00000389683		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-intron	ENST00000344357	ENST00000449286		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5UTR-5UTR	ENST00000344357	ENST00000497003		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
In-frame	ENST00000428402	ENST00000286063		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
In-frame	ENST00000428402	ENST00000358450		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428402	ENST00000450799		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428402	ENST00000409504		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428402	ENST00000389683		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428402	ENST00000449286		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000428402	ENST00000497003		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
Frame-shit	ENST00000409546	ENST00000286063		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
Frame-shit	ENST00000409546	ENST00000358450		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000409546	ENST00000450799		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000409546	ENST00000409504		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000409546	ENST00000389683		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000409546	ENST00000449286		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000409546	ENST00000497003		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000392560	ENST00000286063		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000392560	ENST00000358450		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000392560	ENST00000450799		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000392560	ENST00000409504		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000392560	ENST00000389683		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000392560	ENST00000449286		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-5UTR	ENST00000392560	ENST00000497003		TCGA	LD	LUAD	TCGA-75-6211-01A	OLA1	chr2	175087761	-	PDE11A	chr2	178592900	-
intron-5UTR	ENST00000474528	ENST00000306353		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000474528	ENST00000334462		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000474528	ENST00000409668		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000272433	ENST00000306353		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000272433	ENST00000334462		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000272433	ENST00000409668		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000410065	ENST00000306353		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000410065	ENST00000334462		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
intron-5UTR	ENST00000410065	ENST00000409668		TCGA	LD	LUAD	TCGA-75-6211-01A	SFXN5	chr2	73297589	-	TMEM150A	chr2	85829187	-
5CDS-intron	ENST00000458013	ENST00000438568		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000458013	ENST00000369054		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000458013	ENST00000369064		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000458013	ENST00000606933		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-3UTR	ENST00000458013	ENST00000463555		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368843	ENST00000438568		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368843	ENST00000369054		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368843	ENST00000369064		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368843	ENST00000606933		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-3UTR	ENST00000368843	ENST00000463555		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368838	ENST00000438568		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368838	ENST00000369054		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368838	ENST00000369064		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368838	ENST00000606933		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5CDS-3UTR	ENST00000368838	ENST00000463555		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
intron-intron	ENST00000482791	ENST00000438568		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
intron-intron	ENST00000482791	ENST00000369054		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
intron-intron	ENST00000482791	ENST00000369064		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
intron-intron	ENST00000482791	ENST00000606933		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
intron-3UTR	ENST00000482791	ENST00000463555		TCGA	LD	LUAD	TCGA-75-6211-01A	SNX27	chr1	151655921	+	TARS2	chr1	150476811	+
5UTR-3CDS	ENST00000219334	ENST00000412554		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
5UTR-3CDS	ENST00000219334	ENST00000452149		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
5UTR-5UTR	ENST00000219334	ENST00000470044		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
5UTR-5UTR	ENST00000219334	ENST00000325962		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
5UTR-5UTR	ENST00000219334	ENST00000397344		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
5UTR-intron	ENST00000219334	ENST00000563416		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000568373	ENST00000412554		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000568373	ENST00000452149		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000568373	ENST00000470044		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000568373	ENST00000325962		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000568373	ENST00000397344		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-intron	ENST00000568373	ENST00000563416		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000563226	ENST00000412554		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000563226	ENST00000452149		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000563226	ENST00000470044		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000563226	ENST00000325962		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000563226	ENST00000397344		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-intron	ENST00000563226	ENST00000563416		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000566009	ENST00000412554		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000566009	ENST00000452149		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000566009	ENST00000470044		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000566009	ENST00000325962		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-5UTR	ENST00000566009	ENST00000397344		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-intron	ENST00000566009	ENST00000563416		TCGA	LD	LUAD	TCGA-75-6214-01A	SMPD3	chr16	68482256	-	MEIOB	chr16	1912117	-
intron-3CDS	ENST00000546128	ENST00000308366		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
intron-3CDS	ENST00000546128	ENST00000423423		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
intron-5UTR	ENST00000546128	ENST00000549767		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000371923	ENST00000308366		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000371923	ENST00000423423		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000371923	ENST00000549767		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000271153	ENST00000308366		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000271153	ENST00000423423		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000271153	ENST00000549767		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000371919	ENST00000308366		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000371919	ENST00000423423		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000371919	ENST00000549767		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000452782	ENST00000308366		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
In-frame	ENST00000452782	ENST00000423423		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
5CDS-5UTR	ENST00000452782	ENST00000549767		TCGA	LD	LUAD	TCGA-75-7025-01A	CYP4B1	chr1	47282853	+	PLA2G1B	chr12	120763823	-
Frame-shit	ENST00000226299	ENST00000268695		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
Frame-shit	ENST00000226299	ENST00000542788		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
5CDS-intron	ENST00000226299	ENST00000565364		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
5CDS-intron	ENST00000226299	ENST00000568311		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
5CDS-intron	ENST00000226299	ENST00000569433		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
Frame-shit	ENST00000606142	ENST00000268695		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
Frame-shit	ENST00000606142	ENST00000542788		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
5CDS-intron	ENST00000606142	ENST00000565364		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
5CDS-intron	ENST00000606142	ENST00000568311		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
5CDS-intron	ENST00000606142	ENST00000569433		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
3UTR-3CDS	ENST00000503467	ENST00000268695		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
3UTR-3CDS	ENST00000503467	ENST00000542788		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
3UTR-intron	ENST00000503467	ENST00000565364		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
3UTR-intron	ENST00000503467	ENST00000568311		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
3UTR-intron	ENST00000503467	ENST00000569433		TCGA	LD	LUAD	TCGA-75-7027-01A	LAP3	chr4	17590600	+	GALNS	chr16	88893246	-
Frame-shit	ENST00000553424	ENST00000283233		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
Frame-shit	ENST00000553424	ENST00000409187		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000553424	ENST00000536771		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000553424	ENST00000409889		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000553424	ENST00000491563		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
Frame-shit	ENST00000554112	ENST00000283233		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
Frame-shit	ENST00000554112	ENST00000409187		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000554112	ENST00000536771		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000554112	ENST00000409889		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000554112	ENST00000491563		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
Frame-shit	ENST00000263636	ENST00000283233		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
Frame-shit	ENST00000263636	ENST00000409187		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000263636	ENST00000536771		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000263636	ENST00000409889		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
5CDS-intron	ENST00000263636	ENST00000491563		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
intron-3CDS	ENST00000492955	ENST00000283233		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
intron-3CDS	ENST00000492955	ENST00000409187		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
intron-intron	ENST00000492955	ENST00000536771		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
intron-intron	ENST00000492955	ENST00000409889		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
intron-intron	ENST00000492955	ENST00000491563		TCGA	LD	LUAD	TCGA-75-7031-01A	LY75	chr2	160742931	-	CCDC148	chr2	159107424	-
intron-5UTR	ENST00000401779	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000401779	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000401779	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-intron	ENST00000401779	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000329363	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000329363	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000329363	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-intron	ENST00000329363	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000403326	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000403326	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000403326	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-intron	ENST00000403326	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000405135	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000405135	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000405135	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-intron	ENST00000405135	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000428989	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000428989	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-5UTR	ENST00000428989	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-intron	ENST00000428989	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	ODF3B	chr22	50968333	-	PPP6R2	chr22	50810449	+
In-frame	ENST00000389286	ENST00000302000		TCGA	LD	LUAD	TCGA-75-7031-01A	PRTG	chr15	56032580	-	PYGO1	chr15	55841193	-
In-frame	ENST00000389286	ENST00000563719		TCGA	LD	LUAD	TCGA-75-7031-01A	PRTG	chr15	56032580	-	PYGO1	chr15	55841193	-
In-frame	ENST00000561292	ENST00000302000		TCGA	LD	LUAD	TCGA-75-7031-01A	PRTG	chr15	56032580	-	PYGO1	chr15	55841193	-
In-frame	ENST00000561292	ENST00000563719		TCGA	LD	LUAD	TCGA-75-7031-01A	PRTG	chr15	56032580	-	PYGO1	chr15	55841193	-
In-frame	ENST00000438423	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000438423	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000438423	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000438423	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
In-frame	ENST00000267811	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000267811	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000267811	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000267811	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
In-frame	ENST00000452095	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000452095	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000452095	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000452095	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
In-frame	ENST00000333725	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000333725	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000333725	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000333725	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
In-frame	ENST00000557843	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000557843	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000557843	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5CDS-5UTR	ENST00000557843	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-3CDS	ENST00000560764	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000560764	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000560764	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000560764	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-3CDS	ENST00000543579	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000543579	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000543579	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000543579	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-3CDS	ENST00000537840	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000537840	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000537840	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000537840	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-3CDS	ENST00000343827	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000343827	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000343827	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000343827	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-3CDS	ENST00000559710	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000559710	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000559710	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000559710	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-3CDS	ENST00000559703	ENST00000337435		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000559703	ENST00000437912		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000559703	ENST00000538684		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
intron-5UTR	ENST00000559703	ENST00000561183		TCGA	LD	LUAD	TCGA-75-7031-01A	TCF12	chr15	57213296	+	NIPA1	chr15	23062319	+
5UTR-5UTR	ENST00000395680	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395680	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395680	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-intron	ENST00000395680	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395681	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395681	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395681	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-intron	ENST00000395681	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000252029	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000252029	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000252029	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-intron	ENST00000252029	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395678	ENST00000359139		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395678	ENST00000395741		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-5UTR	ENST00000395678	ENST00000395744		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
5UTR-intron	ENST00000395678	ENST00000216061		TCGA	LD	LUAD	TCGA-75-7031-01A	TYMP	chr22	50968333	-	PPP6R2	chr22	50810449	+
intron-3CDS	ENST00000229195	ENST00000393330		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000229195	ENST00000247829		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000229195	ENST00000546561		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000229195	ENST00000552128		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-intron	ENST00000229195	ENST00000552786		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000418359	ENST00000393330		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000418359	ENST00000247829		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000418359	ENST00000546561		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000418359	ENST00000552128		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-intron	ENST00000418359	ENST00000552786		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000548230	ENST00000393330		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000548230	ENST00000247829		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000548230	ENST00000546561		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000548230	ENST00000552128		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-intron	ENST00000548230	ENST00000552786		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000551483	ENST00000393330		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000551483	ENST00000247829		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000551483	ENST00000546561		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-3CDS	ENST00000551483	ENST00000552128		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
intron-intron	ENST00000551483	ENST00000552786		TCGA	LD	LUAD	TCGA-78-7143-01A	CNOT2	chr12	70688074	+	TSPAN8	chr12	71532010	-
Frame-shit	ENST00000263383	ENST00000430939		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000263383	ENST00000221742		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000263383	ENST00000600144		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000263383	ENST00000598504		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000263383	ENST00000544886		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000534378	ENST00000430939		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
Frame-shit	ENST00000534378	ENST00000221742		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
In-frame	ENST00000534378	ENST00000600144		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000534378	ENST00000598504		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000534378	ENST00000544886		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5UTR-3CDS	ENST00000531635	ENST00000430939		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5UTR-3CDS	ENST00000531635	ENST00000221742		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5UTR-3CDS	ENST00000531635	ENST00000600144		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5UTR-intron	ENST00000531635	ENST00000598504		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5UTR-intron	ENST00000531635	ENST00000544886		TCGA	LD	LUAD	TCGA-78-7143-01A	ILVBL	chr19	15233504	-	SLC1A6	chr19	15061202	-
5CDS-intron	ENST00000341164	ENST00000521096		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000341164	ENST00000220822		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000341164	ENST00000434412		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000536132	ENST00000521096		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000536132	ENST00000220822		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000536132	ENST00000434412		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000552579	ENST00000521096		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000552579	ENST00000220822		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000552579	ENST00000434412		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000547828	ENST00000521096		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000547828	ENST00000220822		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000547828	ENST00000434412		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000547121	ENST00000521096		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000547121	ENST00000220822		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000547121	ENST00000434412		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000546715	ENST00000521096		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000546715	ENST00000220822		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
intron-intron	ENST00000546715	ENST00000434412		TCGA	LD	LUAD	TCGA-78-7143-01A	ZNF606	chr19	58499575	-	GDAP1	chr8	75400913	+
In-frame	ENST00000337318	ENST00000448814		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000337318	ENST00000447005		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000337318	ENST00000454061		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000337318	ENST00000423273		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000337318	ENST00000605742		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000337318	ENST00000436562		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000337318	ENST00000605265		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
Frame-shit	ENST00000392754	ENST00000448814		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000392754	ENST00000447005		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000392754	ENST00000454061		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000392754	ENST00000423273		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000392754	ENST00000605742		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000392754	ENST00000436562		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000392754	ENST00000605265		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
In-frame	ENST00000280780	ENST00000448814		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000280780	ENST00000447005		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000280780	ENST00000454061		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000280780	ENST00000423273		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000280780	ENST00000605742		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-intron	ENST00000280780	ENST00000436562		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
5CDS-5UTR	ENST00000280780	ENST00000605265		TCGA	LD	LUAD	TCGA-78-7145-01A	FAM53B	chr10	126384727	-	BBIP1	chr10	112661370	-
In-frame	ENST00000395957	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000395957	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000395958	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000395958	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000457309	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000457309	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000395956	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000395956	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000353245	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000353245	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000522542	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000522542	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000521309	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000521309	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000522819	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000522819	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000395953	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000395953	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000395948	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
Frame-shit	ENST00000395948	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000395951	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000395951	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000419477	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
In-frame	ENST00000419477	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000492736	ENST00000414222		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-3CDS	ENST00000492736	ENST00000434736		TCGA	LD	LUAD	TCGA-78-7145-01A	YWHAZ	chr8	101960824	-	HHLA1	chr8	133092213	-
intron-5UTR	ENST00000581078	ENST00000392975		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000581078	ENST00000360793		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000581078	ENST00000584031		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000581078	ENST00000392976		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000581078	ENST00000582297		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000581078	ENST00000581573		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000581078	ENST00000448884		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000581078	ENST00000582034		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000581078	ENST00000542042		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000581078	ENST00000581163		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000581078	ENST00000582997		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000392975		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000360793		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000584031		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000392976		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000582297		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000581573		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000582136	ENST00000448884		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000582136	ENST00000582034		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000582136	ENST00000542042		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000582136	ENST00000581163		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000582136	ENST00000582997		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000392975		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000360793		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000584031		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000392976		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000582297		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000581573		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000245543	ENST00000448884		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000245543	ENST00000582034		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000245543	ENST00000542042		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000245543	ENST00000581163		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000245543	ENST00000582997		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000392975		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000360793		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000584031		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000392976		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000582297		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000581573		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-5UTR	ENST00000584947	ENST00000448884		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000584947	ENST00000582034		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000584947	ENST00000542042		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000584947	ENST00000581163		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
5CDS-intron	ENST00000584947	ENST00000582997		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000392975		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000360793		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000584031		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000392976		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000582297		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000581573		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-5UTR	ENST00000579096	ENST00000448884		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000579096	ENST00000582034		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000579096	ENST00000542042		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000579096	ENST00000581163		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
intron-intron	ENST00000579096	ENST00000582997		TCGA	LD	LUAD	TCGA-78-7146-01A	ARMC7	chr17	73106701	+	CYB561	chr17	61514921	-
Frame-shit	ENST00000586622	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000586622	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000586622	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000588460	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000588460	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000588460	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
intron-3CDS	ENST00000591864	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
intron-3CDS	ENST00000591864	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
intron-intron	ENST00000591864	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
intron-3CDS	ENST00000590393	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
intron-3CDS	ENST00000590393	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
intron-intron	ENST00000590393	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000593181	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000593181	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000593181	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000355954	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000355954	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000355954	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000336509	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000336509	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000336509	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000590514	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
Frame-shit	ENST00000590514	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000590514	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
3UTR-3CDS	ENST00000590070	ENST00000358691		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
3UTR-3CDS	ENST00000590070	ENST00000580168		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
3UTR-intron	ENST00000590070	ENST00000580662		TCGA	LD	LUAD	TCGA-78-7146-01A	MFSD11	chr17	74771253	+	HELZ	chr17	65083197	-
5CDS-intron	ENST00000390006	ENST00000542802		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000390006	ENST00000312010		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000390006	ENST00000449938		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000390006	ENST00000588467		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000390006	ENST00000589424		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000390006	ENST00000590546		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000309794	ENST00000542802		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000309794	ENST00000312010		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000309794	ENST00000449938		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000309794	ENST00000588467		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000309794	ENST00000589424		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000309794	ENST00000590546		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000345415	ENST00000542802		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000345415	ENST00000312010		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000345415	ENST00000449938		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000345415	ENST00000588467		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000345415	ENST00000589424		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000345415	ENST00000590546		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000457415	ENST00000542802		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000457415	ENST00000312010		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000457415	ENST00000449938		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000457415	ENST00000588467		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000457415	ENST00000589424		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000457415	ENST00000590546		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000412079	ENST00000542802		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000412079	ENST00000312010		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000412079	ENST00000449938		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000412079	ENST00000588467		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000412079	ENST00000589424		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
5CDS-intron	ENST00000412079	ENST00000590546		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
intron-intron	ENST00000581743	ENST00000542802		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
intron-intron	ENST00000581743	ENST00000312010		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
intron-intron	ENST00000581743	ENST00000449938		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
intron-intron	ENST00000581743	ENST00000588467		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
intron-intron	ENST00000581743	ENST00000589424		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
intron-intron	ENST00000581743	ENST00000590546		TCGA	LD	LUAD	TCGA-78-7146-01A	NARF	chr17	80439087	+	USP36	chr17	76783740	-
Frame-shit	ENST00000398637	ENST00000301068		TCGA	LD	LUAD	TCGA-78-7146-01A	SLC38A1	chr12	46622936	-	RHEBL1	chr12	49462889	-
Frame-shit	ENST00000549049	ENST00000301068		TCGA	LD	LUAD	TCGA-78-7146-01A	SLC38A1	chr12	46622936	-	RHEBL1	chr12	49462889	-
Frame-shit	ENST00000439706	ENST00000301068		TCGA	LD	LUAD	TCGA-78-7146-01A	SLC38A1	chr12	46622936	-	RHEBL1	chr12	49462889	-
Frame-shit	ENST00000546893	ENST00000301068		TCGA	LD	LUAD	TCGA-78-7146-01A	SLC38A1	chr12	46622936	-	RHEBL1	chr12	49462889	-
5UTR-3CDS	ENST00000549633	ENST00000301068		TCGA	LD	LUAD	TCGA-78-7146-01A	SLC38A1	chr12	46622936	-	RHEBL1	chr12	49462889	-
Frame-shit	ENST00000552197	ENST00000301068		TCGA	LD	LUAD	TCGA-78-7146-01A	SLC38A1	chr12	46622936	-	RHEBL1	chr12	49462889	-
5UTR-3CDS	ENST00000378308	ENST00000303227		TCGA	LD	LUAD	TCGA-78-7146-01A	USP9X	chrX	40945362	+	GLOD5	chrX	48624240	+
5UTR-3UTR	ENST00000378308	ENST00000470676		TCGA	LD	LUAD	TCGA-78-7146-01A	USP9X	chrX	40945362	+	GLOD5	chrX	48624240	+
5UTR-3CDS	ENST00000324545	ENST00000303227		TCGA	LD	LUAD	TCGA-78-7146-01A	USP9X	chrX	40945362	+	GLOD5	chrX	48624240	+
5UTR-3UTR	ENST00000324545	ENST00000470676		TCGA	LD	LUAD	TCGA-78-7146-01A	USP9X	chrX	40945362	+	GLOD5	chrX	48624240	+
In-frame	ENST00000251241	ENST00000287272		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
In-frame	ENST00000251241	ENST00000453357		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
In-frame	ENST00000251241	ENST00000404895		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
In-frame	ENST00000251241	ENST00000420357		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
In-frame	ENST00000251241	ENST00000416672		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5CDS-intron	ENST00000251241	ENST00000449677		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000451169	ENST00000287272		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000451169	ENST00000453357		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000451169	ENST00000404895		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000451169	ENST00000420357		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5UTR-3CDS	ENST00000451169	ENST00000416672		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
5UTR-intron	ENST00000451169	ENST00000449677		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000425628	ENST00000287272		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000425628	ENST00000453357		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000425628	ENST00000404895		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000425628	ENST00000420357		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000425628	ENST00000416672		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-intron	ENST00000425628	ENST00000449677		TCGA	LD	LUAD	TCGA-78-7147-01A	DHX40	chr17	57644155	+	UNC5D	chr8	35406810	+
intron-3CDS	ENST00000523819	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
intron-3CDS	ENST00000523819	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
intron-3UTR	ENST00000523819	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000518448	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000518448	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000518448	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000536633	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000536633	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000536633	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000546351	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000546351	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000546351	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000318462	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000318462	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000318462	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000276699	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000276699	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000276699	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000522648	ENST00000519728		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000522648	ENST00000520220		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000522648	ENST00000420292		TCGA	LD	LUAD	TCGA-78-7147-01A	FAM83A	chr8	124206388	+	LYN	chr8	56910905	+
Frame-shit	ENST00000296220	ENST00000290913		TCGA	LD	LUAD	TCGA-78-7147-01A	OSBPL11	chr3	125266250	-	CHCHD6	chr3	126571490	+
Frame-shit	ENST00000296220	ENST00000508789		TCGA	LD	LUAD	TCGA-78-7147-01A	OSBPL11	chr3	125266250	-	CHCHD6	chr3	126571490	+
5CDS-intron	ENST00000296220	ENST00000515867		TCGA	LD	LUAD	TCGA-78-7147-01A	OSBPL11	chr3	125266250	-	CHCHD6	chr3	126571490	+
5CDS-5UTR	ENST00000267163	ENST00000518724		TCGA	LD	LUAD	TCGA-78-7147-01A	RB1	chr13	48881542	+	XKR5	chr8	6673440	-
intron-5UTR	ENST00000484879	ENST00000518724		TCGA	LD	LUAD	TCGA-78-7147-01A	RB1	chr13	48881542	+	XKR5	chr8	6673440	-
Frame-shit	ENST00000480820	ENST00000415822		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000480820	ENST00000392813		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000480820	ENST00000264266		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000295930	ENST00000415822		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000295930	ENST00000392813		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000295930	ENST00000264266		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
intron-3CDS	ENST00000464171	ENST00000415822		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
intron-3CDS	ENST00000464171	ENST00000392813		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
intron-3CDS	ENST00000464171	ENST00000264266		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
intron-3CDS	ENST00000312179	ENST00000415822		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
intron-3CDS	ENST00000312179	ENST00000392813		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
intron-3CDS	ENST00000312179	ENST00000264266		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000475278	ENST00000415822		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000475278	ENST00000392813		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
Frame-shit	ENST00000475278	ENST00000264266		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
3UTR-3CDS	ENST00000496268	ENST00000415822		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
3UTR-3CDS	ENST00000496268	ENST00000392813		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
3UTR-3CDS	ENST00000496268	ENST00000264266		TCGA	LD	LUAD	TCGA-78-7147-01A	RSRC1	chr3	157921034	+	MFSD1	chr3	158541217	+
5CDS-3UTR	ENST00000300026	ENST00000519937		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000300026	ENST00000342375		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000300026	ENST00000393822		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000300026	ENST00000409383		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5UTR-3UTR	ENST00000558492	ENST00000519937		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5UTR-3UTR	ENST00000558492	ENST00000342375		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5UTR-3UTR	ENST00000558492	ENST00000393822		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5UTR-3UTR	ENST00000558492	ENST00000409383		TCGA	LD	LUAD	TCGA-78-7148-01A	PPIB	chr15	64452303	-	SFTPB	chr2	85885978	-
5CDS-5UTR	ENST00000222256	ENST00000541222		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000222256	ENST00000316856		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000222256	ENST00000586534		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000222256	ENST00000592268		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000222256	ENST00000588826		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000464076	ENST00000541222		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000464076	ENST00000316856		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000464076	ENST00000586534		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-5UTR	ENST00000464076	ENST00000592268		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
5CDS-3UTR	ENST00000464076	ENST00000588826		TCGA	LD	LUAD	TCGA-78-7148-01A	RAB3A	chr19	18311137	-	RAD23A	chr19	13058662	+
In-frame	ENST00000519937	ENST00000381470		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000432128		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000443491		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000517600		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000523782		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000265800		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000415253		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000358242		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000523266		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
In-frame	ENST00000519937	ENST00000519907		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000381470		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000432128		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000443491		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000517600		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000523782		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000265800		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000415253		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000358242		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000523266		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000342375	ENST00000519907		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000381470		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000432128		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000443491		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000517600		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000523782		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000265800		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000415253		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000358242		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000523266		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000393822	ENST00000519907		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000381470		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000432128		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000443491		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000517600		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000523782		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000265800		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000415253		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000358242		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000523266		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000409383	ENST00000519907		TCGA	LD	LUAD	TCGA-78-7148-01A	SFTPB	chr2	85892729	-	DMTN	chr8	21925038	+
Frame-shit	ENST00000331006	ENST00000301031		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000331006	ENST00000579310		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000331006	ENST00000568929		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000331006	ENST00000566857		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000353379	ENST00000301031		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000353379	ENST00000579310		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000353379	ENST00000568929		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000353379	ENST00000566857		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000505473	ENST00000301031		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000505473	ENST00000579310		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000505473	ENST00000568929		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000505473	ENST00000566857		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000514965	ENST00000301031		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
intron-3CDS	ENST00000514965	ENST00000579310		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000514965	ENST00000568929		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
intron-intron	ENST00000514965	ENST00000566857		TCGA	LD	LUAD	TCGA-78-7150-01A	CDK10	chr16	89758924	+	SPATA33	chr16	89735694	+
5CDS-5UTR	ENST00000263026	ENST00000579973		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
5CDS-5UTR	ENST00000263026	ENST00000417602		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
5CDS-5UTR	ENST00000263026	ENST00000317932		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
5CDS-5UTR	ENST00000263026	ENST00000408011		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
5CDS-5UTR	ENST00000263026	ENST00000580059		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
5CDS-intron	ENST00000263026	ENST00000584630		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
intron-5UTR	ENST00000561791	ENST00000579973		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
intron-5UTR	ENST00000561791	ENST00000417602		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
intron-5UTR	ENST00000561791	ENST00000317932		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
intron-5UTR	ENST00000561791	ENST00000408011		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
intron-5UTR	ENST00000561791	ENST00000580059		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
intron-intron	ENST00000561791	ENST00000584630		TCGA	LD	LUAD	TCGA-78-7150-01A	EEF2K	chr16	22268706	+	KCTD1	chr18	24081214	-
5CDS-intron	ENST00000566157	ENST00000560208		TCGA	LD	LUAD	TCGA-78-7150-01A	OGFOD1	chr16	56510082	+	CRNDE	chr16	54957562	-
5CDS-intron	ENST00000568397	ENST00000560208		TCGA	LD	LUAD	TCGA-78-7150-01A	OGFOD1	chr16	56510082	+	CRNDE	chr16	54957562	-
intron-intron	ENST00000565209	ENST00000560208		TCGA	LD	LUAD	TCGA-78-7150-01A	OGFOD1	chr16	56510082	+	CRNDE	chr16	54957562	-
Frame-shit	ENST00000449054	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000449054	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000449054	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000449054	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000449054	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000449054	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000449054	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000449054	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000449054	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000449054	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000449054	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000379238	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000379238	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000379238	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000379238	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000379238	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000360802	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000360802	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000360802	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000360802	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000360802	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379239	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379239	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379239	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379239	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000539807	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000539807	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000539807	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000539807	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
Frame-shit	ENST00000418786	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
In-frame	ENST00000418786	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000418786	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000418786	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5CDS-intron	ENST00000418786	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379225	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379225	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379225	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379225	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-3CDS	ENST00000379235	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379235	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379235	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
intron-intron	ENST00000379235	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000379825		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000309615		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000397172		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000379817		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000436040		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000379819		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000468275		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-3CDS	ENST00000480885	ENST00000463596		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000480885	ENST00000476858		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000480885	ENST00000379813		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000480885	ENST00000473270		TCGA	LD	LUAD	TCGA-78-7150-01A	UBAP2	chr9	34017048	-	APTX	chr9	32988122	-
5UTR-intron	ENST00000445403	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
intron-intron	ENST00000373578	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
intron-intron	ENST00000360723	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
intron-intron	ENST00000358208	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
intron-intron	ENST00000373567	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
intron-intron	ENST00000373558	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
intron-intron	ENST00000477066	ENST00000362582		TCGA	LD	LUAD	TCGA-78-7152-01A	SRC	chr20	35973290	+	SNHG17	chr20	37049745	-
In-frame	ENST00000303688	ENST00000454859		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000303688	ENST00000474289		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000528402		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000454591		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000368291		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000309620		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000430841		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000368289		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000303688	ENST00000531967		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000303688	ENST00000488087		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
In-frame	ENST00000383794	ENST00000454859		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000383794	ENST00000474289		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000528402		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000454591		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000368291		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000309620		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000430841		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000368289		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000383794	ENST00000531967		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000383794	ENST00000488087		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000476763	ENST00000454859		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000476763	ENST00000474289		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000528402		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000454591		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000368291		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000309620		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000430841		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000368289		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000476763	ENST00000531967		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000476763	ENST00000488087		TCGA	LD	LUAD	TCGA-78-7153-01A	CCDC174	chr3	14708454	+	ECHDC1	chr6	127611422	-
In-frame	ENST00000345512	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-5UTR	ENST00000345512	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
In-frame	ENST00000373779	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-5UTR	ENST00000373779	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
In-frame	ENST00000356870	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-5UTR	ENST00000356870	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
In-frame	ENST00000323874	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-5UTR	ENST00000323874	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
In-frame	ENST00000428026	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-5UTR	ENST00000428026	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
In-frame	ENST00000460170	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-5UTR	ENST00000460170	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
intron-3CDS	ENST00000415600	ENST00000297354		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
intron-5UTR	ENST00000415600	ENST00000519697		TCGA	LD	LUAD	TCGA-78-7153-01A	PTPRU	chr1	29563229	+	SBSPON	chr8	73984105	-
5CDS-intron	ENST00000389327	ENST00000276616		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000389327	ENST00000517981		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000389328	ENST00000276616		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000389328	ENST00000517981		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000438773	ENST00000276616		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000438773	ENST00000517981		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
intron-intron	ENST00000522504	ENST00000276616		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
intron-5UTR	ENST00000522504	ENST00000517981		TCGA	LD	LUAD	TCGA-78-7153-01A	TRAPPC9	chr8	141231558	-	PSKH2	chr8	87086400	-
Frame-shit	ENST00000300176	ENST00000432884		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
Frame-shit	ENST00000300176	ENST00000262942		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
5CDS-intron	ENST00000300176	ENST00000471960		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
3UTR-3CDS	ENST00000262935	ENST00000432884		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
3UTR-3CDS	ENST00000262935	ENST00000262942		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
3UTR-intron	ENST00000262935	ENST00000471960		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
3UTR-3CDS	ENST00000474713	ENST00000432884		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
3UTR-3CDS	ENST00000474713	ENST00000262942		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
3UTR-intron	ENST00000474713	ENST00000471960		TCGA	LD	LUAD	TCGA-78-7154-01A	AGFG2	chr7	100161926	+	ARPC1A	chr7	98961166	+
5CDS-intron	ENST00000539107	ENST00000602550		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000438412		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000539107	ENST00000444126		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000449544		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000454129		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000454269		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000426882		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000539107	ENST00000412685		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000539107	ENST00000413358		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000539107	ENST00000602290		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000602498		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000602591		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000602698		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000602861		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000602319		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000602516		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000421520		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000416289		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000458584		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000443909		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000443079		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000539107	ENST00000432895		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602550		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000438412		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000545336	ENST00000444126		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000449544		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000454129		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000454269		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000426882		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000545336	ENST00000412685		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000545336	ENST00000413358		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000545336	ENST00000602290		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602498		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602591		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602698		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602861		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602319		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000602516		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000421520		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000416289		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000458584		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000443909		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000443079		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000545336	ENST00000432895		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602550		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000438412		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381256	ENST00000444126		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000449544		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000454129		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000454269		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000426882		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381256	ENST00000412685		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381256	ENST00000413358		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381256	ENST00000602290		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602498		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602591		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602698		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602861		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602319		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000602516		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000421520		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000416289		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000458584		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000443909		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000443079		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381256	ENST00000432895		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602550		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000438412		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381259	ENST00000444126		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000449544		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000454129		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000454269		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000426882		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381259	ENST00000412685		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381259	ENST00000413358		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000381259	ENST00000602290		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602498		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602591		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602698		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602861		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602319		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000602516		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000421520		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000416289		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000458584		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000443909		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000443079		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000381259	ENST00000432895		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602550		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000438412		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-5UTR	ENST00000540401	ENST00000444126		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000449544		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000454129		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000454269		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000426882		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-5UTR	ENST00000540401	ENST00000412685		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-5UTR	ENST00000540401	ENST00000413358		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-5UTR	ENST00000540401	ENST00000602290		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602498		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602591		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602698		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602861		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602319		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000602516		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000421520		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000416289		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000458584		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000443909		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000443079		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-intron	ENST00000540401	ENST00000432895		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602550		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000438412		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000306172	ENST00000444126		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000449544		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000454129		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000454269		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000426882		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000306172	ENST00000412685		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000306172	ENST00000413358		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-5UTR	ENST00000306172	ENST00000602290		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602498		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602591		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602698		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602861		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602319		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000602516		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000421520		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000416289		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000458584		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000443909		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000443079		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
5CDS-intron	ENST00000306172	ENST00000432895		TCGA	LD	LUAD	TCGA-78-7154-01A	CCDC91	chr12	28460682	+	HCG18	chr6	30282259	-
3UTR-5UTR	ENST00000493499	ENST00000405709		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-5UTR	ENST00000493499	ENST00000331762		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-5UTR	ENST00000493499	ENST00000452895		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-5UTR	ENST00000493499	ENST00000415362		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-5UTR	ENST00000493499	ENST00000447215		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-5UTR	ENST00000493499	ENST00000437687		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-intron	ENST00000493499	ENST00000489381		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
3UTR-intron	ENST00000493499	ENST00000450877		TCGA	LD	LUAD	TCGA-78-7154-01A	STAG3L5P	chr7	99943591	+	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000355540	ENST00000312814		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-5UTR	ENST00000355540	ENST00000454074		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-intron	ENST00000355540	ENST00000480969		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-5UTR	ENST00000359863	ENST00000312814		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-5UTR	ENST00000359863	ENST00000454074		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-intron	ENST00000359863	ENST00000480969		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-5UTR	ENST00000446306	ENST00000312814		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-5UTR	ENST00000446306	ENST00000454074		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
5CDS-intron	ENST00000446306	ENST00000480969		TCGA	LD	LUAD	TCGA-78-7154-01A	TRRAP	chr7	98552927	+	TMEM168	chr7	112425008	-
Frame-shit	ENST00000181839	ENST00000325590		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
Frame-shit	ENST00000181839	ENST00000356264		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
Frame-shit	ENST00000181839	ENST00000428293		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
5CDS-intron	ENST00000181839	ENST00000471913		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
Frame-shit	ENST00000340829	ENST00000325590		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
Frame-shit	ENST00000340829	ENST00000356264		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
Frame-shit	ENST00000340829	ENST00000428293		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
5CDS-intron	ENST00000340829	ENST00000471913		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
3UTR-3CDS	ENST00000484589	ENST00000325590		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
3UTR-3CDS	ENST00000484589	ENST00000356264		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
3UTR-3CDS	ENST00000484589	ENST00000428293		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
3UTR-intron	ENST00000484589	ENST00000471913		TCGA	LD	LUAD	TCGA-78-7155-01A	CDK13	chr7	40041630	+	AMPH	chr7	38574611	-
intron-5UTR	ENST00000451429	ENST00000374268		TCGA	LD	LUAD	TCGA-78-7155-01A	CEP85	chr1	26570809	+	FAM110D	chr1	26487703	+
5CDS-5UTR	ENST00000252992	ENST00000374268		TCGA	LD	LUAD	TCGA-78-7155-01A	CEP85	chr1	26570809	+	FAM110D	chr1	26487703	+
intron-5UTR	ENST00000469609	ENST00000374268		TCGA	LD	LUAD	TCGA-78-7155-01A	CEP85	chr1	26570809	+	FAM110D	chr1	26487703	+
5CDS-intron	ENST00000373365	ENST00000605917		TCGA	LD	LUAD	TCGA-78-7155-01A	GLO1	chr6	38670747	-	CASC15	chr6	22214536	+
intron-intron	ENST00000470973	ENST00000605917		TCGA	LD	LUAD	TCGA-78-7155-01A	GLO1	chr6	38670747	-	CASC15	chr6	22214536	+
In-frame	ENST00000318217	ENST00000225823		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000318217	ENST00000359872		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-5UTR	ENST00000318217	ENST00000448983		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000394649	ENST00000225823		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000394649	ENST00000359872		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-5UTR	ENST00000394649	ENST00000448983		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000579584	ENST00000225823		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000579584	ENST00000359872		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-5UTR	ENST00000579584	ENST00000448983		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000584232	ENST00000225823		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000584232	ENST00000359872		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-5UTR	ENST00000584232	ENST00000448983		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000583621	ENST00000225823		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000583621	ENST00000359872		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-5UTR	ENST00000583621	ENST00000448983		TCGA	LD	LUAD	TCGA-78-7155-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000398844	ENST00000452510		TCGA	LD	LUAD	TCGA-78-7155-01A	SEC24A	chr5	134002686	+	DDX46	chr5	134113264	+
In-frame	ENST00000398844	ENST00000354283		TCGA	LD	LUAD	TCGA-78-7155-01A	SEC24A	chr5	134002686	+	DDX46	chr5	134113264	+
5CDS-intron	ENST00000398844	ENST00000509178		TCGA	LD	LUAD	TCGA-78-7155-01A	SEC24A	chr5	134002686	+	DDX46	chr5	134113264	+
In-frame	ENST00000322887	ENST00000452510		TCGA	LD	LUAD	TCGA-78-7155-01A	SEC24A	chr5	134002686	+	DDX46	chr5	134113264	+
In-frame	ENST00000322887	ENST00000354283		TCGA	LD	LUAD	TCGA-78-7155-01A	SEC24A	chr5	134002686	+	DDX46	chr5	134113264	+
5CDS-intron	ENST00000322887	ENST00000509178		TCGA	LD	LUAD	TCGA-78-7155-01A	SEC24A	chr5	134002686	+	DDX46	chr5	134113264	+
5CDS-intron	ENST00000261789	ENST00000551492		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000346562		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000341321		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000548645		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000356141		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000357798		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000547068		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000261789	ENST00000551008		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000261789	ENST00000550662		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000551492		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000346562		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000341321		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000548645		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000356141		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000357798		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000547068		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000528669	ENST00000551008		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000528669	ENST00000550662		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000551492		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000346562		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000341321		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000548645		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000356141		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000357798		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000547068		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000556387	ENST00000551008		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000556387	ENST00000550662		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000551492		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000346562		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000341321		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000548645		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000356141		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000357798		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000547068		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000530611	ENST00000551008		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000530611	ENST00000550662		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000551492		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000346562		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000341321		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000548645		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000356141		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000357798		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000547068		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000524835	ENST00000551008		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000524835	ENST00000550662		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000551492		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000346562		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000341321		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000548645		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000356141		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000357798		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000547068		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-intron	ENST00000396854	ENST00000551008		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
5CDS-3UTR	ENST00000396854	ENST00000550662		TCGA	LD	LUAD	TCGA-78-7155-01A	TM9SF1	chr14	24661854	-	NPAS3	chr14	34081611	+
intron-5UTR	ENST00000607334	ENST00000245451		TCGA	LD	LUAD	TCGA-78-7161-01A	DLEU2	chr13	50642233	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000607334	ENST00000559087		TCGA	LD	LUAD	TCGA-78-7161-01A	DLEU2	chr13	50642233	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000607334	ENST00000417573		TCGA	LD	LUAD	TCGA-78-7161-01A	DLEU2	chr13	50642233	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000607334	ENST00000558984		TCGA	LD	LUAD	TCGA-78-7161-01A	DLEU2	chr13	50642233	-	BMP4	chr14	54420118	-
intron-intron	ENST00000607334	ENST00000558489		TCGA	LD	LUAD	TCGA-78-7161-01A	DLEU2	chr13	50642233	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000261596	ENST00000381989		TCGA	LD	LUAD	TCGA-78-7161-01A	LPIN2	chr18	2954502	-	PARP4	chr13	25077915	-
5CDS-intron	ENST00000261596	ENST00000480576		TCGA	LD	LUAD	TCGA-78-7161-01A	LPIN2	chr18	2954502	-	PARP4	chr13	25077915	-
intron-5UTR	ENST00000581568	ENST00000381989		TCGA	LD	LUAD	TCGA-78-7161-01A	LPIN2	chr18	2954502	-	PARP4	chr13	25077915	-
intron-intron	ENST00000581568	ENST00000480576		TCGA	LD	LUAD	TCGA-78-7161-01A	LPIN2	chr18	2954502	-	PARP4	chr13	25077915	-
5CDS-5UTR	ENST00000579226	ENST00000261596		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000579226	ENST00000581568		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-5UTR	ENST00000217652	ENST00000261596		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000217652	ENST00000581568		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-5UTR	ENST00000578611	ENST00000261596		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000578611	ENST00000581568		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
intron-5UTR	ENST00000585090	ENST00000261596		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
intron-intron	ENST00000585090	ENST00000581568		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-5UTR	ENST00000580887	ENST00000261596		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000580887	ENST00000581568		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-5UTR	ENST00000536605	ENST00000261596		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
5CDS-intron	ENST00000536605	ENST00000581568		TCGA	LD	LUAD	TCGA-78-7161-01A	MYL12A	chr18	3254048	+	LPIN2	chr18	2960847	-
Frame-shit	ENST00000298198	ENST00000367164		TCGA	LD	LUAD	TCGA-78-7161-01A	PGM2L1	chr11	74109096	-	RBBP5	chr1	205074296	-
Frame-shit	ENST00000298198	ENST00000264515		TCGA	LD	LUAD	TCGA-78-7161-01A	PGM2L1	chr11	74109096	-	RBBP5	chr1	205074296	-
5CDS-5UTR	ENST00000298198	ENST00000484379		TCGA	LD	LUAD	TCGA-78-7161-01A	PGM2L1	chr11	74109096	-	RBBP5	chr1	205074296	-
5CDS-intron	ENST00000509018	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000509018	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000307984	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000507093	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000296859	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
intron-intron	ENST00000512052	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000308008	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000510071	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000343846		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000366878		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000484758		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000494793		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000478605		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000454695		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000344029		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
5UTR-intron	ENST00000503398	ENST00000366877		TCGA	LD	LUAD	TCGA-78-7161-01A	RAPGEF6	chr5	130928076	-	SUSD4	chr1	223408442	-
In-frame	ENST00000519937	ENST00000245907		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
5CDS-intron	ENST00000519937	ENST00000599668		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
Frame-shit	ENST00000342375	ENST00000245907		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
5CDS-intron	ENST00000342375	ENST00000599668		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
Frame-shit	ENST00000393822	ENST00000245907		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
5CDS-intron	ENST00000393822	ENST00000599668		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
Frame-shit	ENST00000409383	ENST00000245907		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
5CDS-intron	ENST00000409383	ENST00000599668		TCGA	LD	LUAD	TCGA-78-7161-01A	SFTPB	chr2	85892412	-	C3	chr19	6696670	-
Frame-shit	ENST00000458659	ENST00000309364		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000359180		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000317589		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000355397		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000429027		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000539256		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000299275		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000538714		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000543806		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
Frame-shit	ENST00000458659	ENST00000424268		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5CDS-intron	ENST00000458659	ENST00000540972		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5CDS-3UTR	ENST00000458659	ENST00000510738		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000309364		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000359180		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000317589		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000355397		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000429027		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000539256		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000299275		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000538714		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000543806		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000501704	ENST00000424268		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-intron	ENST00000501704	ENST00000540972		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3UTR	ENST00000501704	ENST00000510738		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000309364		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000359180		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000317589		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000355397		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000429027		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000539256		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000299275		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000538714		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000543806		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3CDS	ENST00000261489	ENST00000424268		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-intron	ENST00000261489	ENST00000540972		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
intron-3UTR	ENST00000261489	ENST00000510738		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000309364		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000359180		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000317589		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000355397		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000429027		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000539256		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000299275		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000538714		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000543806		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3CDS	ENST00000460842	ENST00000424268		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-intron	ENST00000460842	ENST00000540972		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5UTR-3UTR	ENST00000460842	ENST00000510738		TCGA	LD	LUAD	TCGA-78-7161-01A	TSC22D1	chr13	45147299	-	PLEKHA5	chr12	19427450	+
5CDS-5UTR	ENST00000524325	ENST00000519824		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000524325	ENST00000522746		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000524325	ENST00000523509		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000524325	ENST00000401979		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000524325	ENST00000519110		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000524325	ENST00000522250		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000524325	ENST00000517654		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000524325	ENST00000519540		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000524325	ENST00000522941		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000524325	ENST00000518879		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000519824		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000522746		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000523509		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000401979		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000519110		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000307180	ENST00000522250		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000517654		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000307180	ENST00000519540		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000307180	ENST00000522941		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000307180	ENST00000518879		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000519824		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000522746		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000523509		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000401979		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000519110		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000520166	ENST00000522250		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000517654		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000520166	ENST00000519540		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000520166	ENST00000522941		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000520166	ENST00000518879		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000519824		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000522746		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000523509		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000401979		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000519110		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000519651	ENST00000522250		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000517654		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000519651	ENST00000519540		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000519651	ENST00000522941		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-intron	ENST00000519651	ENST00000518879		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000519824		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000522746		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000523509		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000401979		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000519110		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-intron	ENST00000518928	ENST00000522250		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000517654		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-5UTR	ENST00000518928	ENST00000519540		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-intron	ENST00000518928	ENST00000522941		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
intron-intron	ENST00000518928	ENST00000518879		TCGA	LD	LUAD	TCGA-78-7161-01A	TSNARE1	chr8	143365774	-	FAM49B	chr8	130891717	-
5CDS-5UTR	ENST00000262120	ENST00000579226		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000262120	ENST00000217652		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000262120	ENST00000578611		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-intron	ENST00000262120	ENST00000585090		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-intron	ENST00000262120	ENST00000580887		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000262120	ENST00000536605		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000581641	ENST00000579226		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000581641	ENST00000217652		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000581641	ENST00000578611		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-intron	ENST00000581641	ENST00000585090		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-intron	ENST00000581641	ENST00000580887		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
5CDS-5UTR	ENST00000581641	ENST00000536605		TCGA	LD	LUAD	TCGA-78-7161-01A	TWSG1	chr18	9360069	+	MYL12A	chr18	3253231	+
Frame-shit	ENST00000535572	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000535572	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000537687	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000537687	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000315939	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000315939	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000447667	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
intron-intron	ENST00000447667	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000530271	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000530271	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000540360	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
intron-intron	ENST00000540360	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
Frame-shit	ENST00000340908	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
5CDS-intron	ENST00000340908	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
intron-3CDS	ENST00000574564	ENST00000266383		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
intron-intron	ENST00000574564	ENST00000544638		TCGA	LD	LUAD	TCGA-78-7220-01A	WNK1	chr12	971436	+	B4GALNT3	chr12	644332	+
5CDS-5UTR	ENST00000525428	ENST00000339020		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000525428	ENST00000507416		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000263309	ENST00000339020		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000263309	ENST00000507416		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000525064	ENST00000339020		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000525064	ENST00000507416		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000532069	ENST00000339020		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000532069	ENST00000507416		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000528364	ENST00000339020		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
5CDS-5UTR	ENST00000528364	ENST00000507416		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
intron-5UTR	ENST00000533957	ENST00000339020		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
intron-5UTR	ENST00000533957	ENST00000507416		TCGA	LD	LUAD	TCGA-78-7536-01A	CLNS1A	chr11	77348635	-	SMIM15	chr5	60457054	-
3UTR-intron	ENST00000377452	ENST00000217246		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
3UTR-intron	ENST00000377452	ENST00000310348		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
3UTR-intron	ENST00000377452	ENST00000464883		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
3UTR-intron	ENST00000377452	ENST00000402914		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
3UTR-intron	ENST00000377452	ENST00000378058		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
3UTR-intron	ENST00000377452	ENST00000407045		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
intron-intron	ENST00000494921	ENST00000217246		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
intron-intron	ENST00000494921	ENST00000310348		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
intron-intron	ENST00000494921	ENST00000464883		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
intron-intron	ENST00000494921	ENST00000402914		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
intron-intron	ENST00000494921	ENST00000378058		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
intron-intron	ENST00000494921	ENST00000407045		TCGA	LD	LUAD	TCGA-78-7536-01A	DTD1	chr20	18724915	+	MACROD2	chr20	14868789	+
Frame-shit	ENST00000545391	ENST00000297784		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
Frame-shit	ENST00000545391	ENST00000340019		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
Frame-shit	ENST00000545391	ENST00000396237		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
5CDS-intron	ENST00000545391	ENST00000486417		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
In-frame	ENST00000361171	ENST00000297784		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
In-frame	ENST00000361171	ENST00000340019		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
In-frame	ENST00000361171	ENST00000396237		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
5CDS-intron	ENST00000361171	ENST00000486417		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
In-frame	ENST00000436593	ENST00000297784		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
In-frame	ENST00000436593	ENST00000340019		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
In-frame	ENST00000436593	ENST00000396237		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
5CDS-intron	ENST00000436593	ENST00000486417		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
Frame-shit	ENST00000535766	ENST00000297784		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
Frame-shit	ENST00000535766	ENST00000340019		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
Frame-shit	ENST00000535766	ENST00000396237		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
5CDS-intron	ENST00000535766	ENST00000486417		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
intron-3CDS	ENST00000485886	ENST00000297784		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
intron-3CDS	ENST00000485886	ENST00000340019		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
intron-3CDS	ENST00000485886	ENST00000396237		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
intron-intron	ENST00000485886	ENST00000486417		TCGA	LD	LUAD	TCGA-78-7536-01A	MVB12B	chr9	129157976	+	TMC1	chr9	75355035	+
5CDS-5UTR	ENST00000202556	ENST00000299204		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000202556	ENST00000445922		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
5CDS-5UTR	ENST00000202556	ENST00000337322		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
intron-5UTR	ENST00000423488	ENST00000299204		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
intron-5UTR	ENST00000423488	ENST00000445922		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
intron-5UTR	ENST00000423488	ENST00000337322		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
intron-5UTR	ENST00000555391	ENST00000299204		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
intron-5UTR	ENST00000555391	ENST00000445922		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
intron-5UTR	ENST00000555391	ENST00000337322		TCGA	LD	LUAD	TCGA-78-7536-01A	PPP1R13B	chr14	104313636	-	BAG5	chr14	104027529	-
Frame-shit	ENST00000416488	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000416488	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000416488	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000536435	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000536435	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000536435	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000228289	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000228289	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000228289	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000541211	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000541211	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000541211	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000539248	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000539248	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000539248	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000542711	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000542711	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000542711	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5UTR-3CDS	ENST00000537565	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5UTR-intron	ENST00000537565	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5UTR-intron	ENST00000537565	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000536899	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000536899	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000536899	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000542986	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000542986	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000542986	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000541009	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000541009	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000541009	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000592241	ENST00000264607		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000592241	ENST00000469885		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
5CDS-intron	ENST00000592241	ENST00000409297		TCGA	LD	LUAD	TCGA-78-7536-01A	ZNF268	chr12	133758616	+	ASB1	chr2	239352983	+
Frame-shit	ENST00000374580	ENST00000281772		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
Frame-shit	ENST00000374580	ENST00000418791		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
Frame-shit	ENST00000374580	ENST00000452086		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
5CDS-intron	ENST00000374580	ENST00000429908		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
5CDS-intron	ENST00000374580	ENST00000457374		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
Frame-shit	ENST00000374574	ENST00000281772		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
Frame-shit	ENST00000374574	ENST00000418791		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
Frame-shit	ENST00000374574	ENST00000452086		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
5CDS-intron	ENST00000374574	ENST00000429908		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
5CDS-intron	ENST00000374574	ENST00000457374		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
intron-3CDS	ENST00000479069	ENST00000281772		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
intron-3CDS	ENST00000479069	ENST00000418791		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
intron-3CDS	ENST00000479069	ENST00000452086		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
intron-intron	ENST00000479069	ENST00000429908		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
intron-intron	ENST00000479069	ENST00000457374		TCGA	LD	LUAD	TCGA-78-7539-01A	BMPR2	chr2	203242273	+	KANSL1L	chr2	210962931	-
In-frame	ENST00000278886	ENST00000446778		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
In-frame	ENST00000278886	ENST00000322090		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
5CDS-intron	ENST00000278886	ENST00000487370		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
In-frame	ENST00000422516	ENST00000446778		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
In-frame	ENST00000422516	ENST00000322090		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
5CDS-intron	ENST00000422516	ENST00000487370		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
intron-3CDS	ENST00000464285	ENST00000446778		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
intron-3CDS	ENST00000464285	ENST00000322090		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
intron-intron	ENST00000464285	ENST00000487370		TCGA	LD	LUAD	TCGA-78-7539-01A	NINL	chr20	25477299	-	GBAS	chr7	56051421	+
Frame-shit	ENST00000368378	ENST00000357325		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
Frame-shit	ENST00000368378	ENST00000537739		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
Frame-shit	ENST00000368378	ENST00000368209		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5CDS-5UTR	ENST00000368378	ENST00000465180		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5CDS-5UTR	ENST00000368378	ENST00000416666		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5CDS-5UTR	ENST00000368378	ENST00000368206		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-3CDS	ENST00000541576	ENST00000357325		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-3CDS	ENST00000541576	ENST00000537739		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-3CDS	ENST00000541576	ENST00000368209		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-5UTR	ENST00000541576	ENST00000465180		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-5UTR	ENST00000541576	ENST00000416666		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-5UTR	ENST00000541576	ENST00000368206		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
Frame-shit	ENST00000457183	ENST00000357325		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
Frame-shit	ENST00000457183	ENST00000537739		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
Frame-shit	ENST00000457183	ENST00000368209		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5CDS-5UTR	ENST00000457183	ENST00000465180		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5CDS-5UTR	ENST00000457183	ENST00000416666		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5CDS-5UTR	ENST00000457183	ENST00000368206		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-3CDS	ENST00000541990	ENST00000357325		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-3CDS	ENST00000541990	ENST00000537739		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-3CDS	ENST00000541990	ENST00000368209		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-5UTR	ENST00000541990	ENST00000465180		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-5UTR	ENST00000541990	ENST00000416666		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
intron-5UTR	ENST00000541990	ENST00000368206		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5UTR-3CDS	ENST00000486260	ENST00000357325		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5UTR-3CDS	ENST00000486260	ENST00000537739		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5UTR-3CDS	ENST00000486260	ENST00000368209		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5UTR-5UTR	ENST00000486260	ENST00000465180		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5UTR-5UTR	ENST00000486260	ENST00000416666		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
5UTR-5UTR	ENST00000486260	ENST00000368206		TCGA	LD	LUAD	TCGA-78-7539-01A	THBS3	chr1	155175991	-	HDGF	chr1	156715165	-
Frame-shit	ENST00000397752	ENST00000431078		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
5CDS-intron	ENST00000397752	ENST00000423939		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
Frame-shit	ENST00000318493	ENST00000431078		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
5CDS-intron	ENST00000318493	ENST00000423939		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
Frame-shit	ENST00000436117	ENST00000431078		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
5CDS-intron	ENST00000436117	ENST00000423939		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
intron-3CDS	ENST00000495962	ENST00000431078		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
intron-intron	ENST00000495962	ENST00000423939		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
intron-3CDS	ENST00000539704	ENST00000431078		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
intron-intron	ENST00000539704	ENST00000423939		TCGA	LD	LUAD	TCGA-78-7542-01A	MET	chr7	116340338	+	CNTNAP5	chr2	124999777	+
intron-3CDS	ENST00000494674	ENST00000328908		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3CDS	ENST00000494674	ENST00000397588		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3UTR	ENST00000494674	ENST00000472453		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3UTR	ENST00000494674	ENST00000449732		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3UTR	ENST00000494674	ENST00000343762		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
Frame-shit	ENST00000337659	ENST00000328908		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
Frame-shit	ENST00000337659	ENST00000397588		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
5CDS-3UTR	ENST00000337659	ENST00000472453		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
5CDS-3UTR	ENST00000337659	ENST00000449732		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
5CDS-3UTR	ENST00000337659	ENST00000343762		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3CDS	ENST00000538861	ENST00000328908		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3CDS	ENST00000538861	ENST00000397588		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3UTR	ENST00000538861	ENST00000472453		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3UTR	ENST00000538861	ENST00000449732		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
intron-3UTR	ENST00000538861	ENST00000343762		TCGA	LD	LUAD	TCGA-78-7542-01A	PRPF4B	chr6	4021700	+	CDYL	chr6	4935749	+
In-frame	ENST00000254624	ENST00000395386		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
Frame-shit	ENST00000254624	ENST00000337920		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
Frame-shit	ENST00000254624	ENST00000395376		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
5CDS-5UTR	ENST00000254624	ENST00000220847		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
5CDS-5UTR	ENST00000254624	ENST00000395390		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
5CDS-5UTR	ENST00000254624	ENST00000395379		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000334503	ENST00000395386		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000334503	ENST00000337920		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000334503	ENST00000395376		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000334503	ENST00000220847		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000334503	ENST00000395390		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000334503	ENST00000395379		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000519656	ENST00000395386		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000519656	ENST00000337920		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000519656	ENST00000395376		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000519656	ENST00000220847		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000519656	ENST00000395390		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000519656	ENST00000395379		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000521940	ENST00000395386		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000521940	ENST00000337920		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-3CDS	ENST00000521940	ENST00000395376		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000521940	ENST00000220847		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000521940	ENST00000395390		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
intron-5UTR	ENST00000521940	ENST00000395379		TCGA	LD	LUAD	TCGA-78-8640-01A	EFR3A	chr8	132916569	+	PHF20L1	chr8	133823291	+
In-frame	ENST00000278025	ENST00000280333		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
5CDS-3UTR	ENST00000278025	ENST00000484400		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
In-frame	ENST00000447176	ENST00000280333		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
5CDS-3UTR	ENST00000447176	ENST00000484400		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
5UTR-3CDS	ENST00000465384	ENST00000280333		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
5UTR-3UTR	ENST00000465384	ENST00000484400		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
intron-3CDS	ENST00000368551	ENST00000280333		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
intron-3UTR	ENST00000368551	ENST00000484400		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
In-frame	ENST00000368552	ENST00000280333		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
5CDS-3UTR	ENST00000368552	ENST00000484400		TCGA	LD	LUAD	TCGA-78-8640-01A	FUOM	chr10	135171427	-	DOCK1	chr10	129055599	+
intron-3CDS	ENST00000525037	ENST00000535458		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
intron-3CDS	ENST00000525037	ENST00000290158		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
intron-3CDS	ENST00000525037	ENST00000540627		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
intron-3CDS	ENST00000525037	ENST00000537679		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
intron-intron	ENST00000525037	ENST00000577918		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000530173	ENST00000535458		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000530173	ENST00000290158		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000530173	ENST00000540627		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000530173	ENST00000537679		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
5CDS-intron	ENST00000530173	ENST00000577918		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000322157	ENST00000535458		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000322157	ENST00000290158		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000322157	ENST00000540627		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000322157	ENST00000537679		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
5CDS-intron	ENST00000322157	ENST00000577918		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000544660	ENST00000535458		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000544660	ENST00000290158		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000544660	ENST00000540627		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
In-frame	ENST00000544660	ENST00000537679		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
5CDS-intron	ENST00000544660	ENST00000577918		TCGA	LD	LUAD	TCGA-78-8648-01A	NPEPPS	chr17	45608921	+	KPNB1	chr17	45740455	+
5CDS-intron	ENST00000341500	ENST00000388999		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000341500	ENST00000401500		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000341500	ENST00000270301		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000341500	ENST00000378860		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000302850	ENST00000388999		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000302850	ENST00000401500		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000302850	ENST00000270301		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
5CDS-intron	ENST00000302850	ENST00000378860		TCGA	LD	LUAD	TCGA-78-8655-01A	INSR	chr19	7267356	-	WDR62	chr19	36579940	+
In-frame	ENST00000358716	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
5CDS-intron	ENST00000358716	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
Frame-shit	ENST00000382422	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
5CDS-intron	ENST00000382422	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
In-frame	ENST00000360310	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
5CDS-intron	ENST00000360310	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
5UTR-3CDS	ENST00000553853	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
5UTR-intron	ENST00000553853	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	BAZ1A	chr14	35331250	-	LRRC9	chr14	60444735	+
5UTR-3CDS	ENST00000561924	ENST00000219169		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
5UTR-3CDS	ENST00000561924	ENST00000569436		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
5UTR-3CDS	ENST00000561924	ENST00000568396		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
In-frame	ENST00000290858	ENST00000219169		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
In-frame	ENST00000290858	ENST00000569436		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
In-frame	ENST00000290858	ENST00000568396		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
In-frame	ENST00000412916	ENST00000219169		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
In-frame	ENST00000412916	ENST00000569436		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
In-frame	ENST00000412916	ENST00000568396		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000568858	ENST00000219169		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000568858	ENST00000569436		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000568858	ENST00000568396		TCGA	LD	LUAD	TCGA-78-8660-01A	CBFB	chr16	67070658	+	NUTF2	chr16	67902243	+
intron-3CDS	ENST00000300853	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000300853	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000300853	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
5UTR-3CDS	ENST00000423698	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
5UTR-3CDS	ENST00000423698	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
5UTR-3CDS	ENST00000423698	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000588738	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000588738	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000588738	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000340192	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000340192	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000340192	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000591636	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000591636	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000591636	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000589165	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000589165	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000589165	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000013807	ENST00000398599		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000013807	ENST00000221992		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
intron-3CDS	ENST00000013807	ENST00000405816		TCGA	LD	LUAD	TCGA-78-8660-01A	ERCC1	chr19	45981994	-	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000394997	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
5CDS-3UTR	ENST00000394997	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
Frame-shit	ENST00000337138	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
5CDS-3UTR	ENST00000337138	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
Frame-shit	ENST00000323441	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
5CDS-3UTR	ENST00000323441	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-3CDS	ENST00000557538	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-3UTR	ENST00000557538	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-3CDS	ENST00000539097	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-3UTR	ENST00000539097	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-3CDS	ENST00000557206	ENST00000445360		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-3UTR	ENST00000557206	ENST00000454474		TCGA	LD	LUAD	TCGA-78-8660-01A	HIF1A	chr14	62162557	+	LRRC9	chr14	60411307	+
intron-5UTR	ENST00000406590	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000406590	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000406590	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000406590	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000406590	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-intron	ENST00000406590	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000406590	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000570646	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000570646	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000570646	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000570646	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000570646	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-intron	ENST00000570646	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000570646	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000458134	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000458134	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000458134	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000458134	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000458134	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-intron	ENST00000458134	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000458134	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000219700	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000219700	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000219700	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000219700	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000219700	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-intron	ENST00000219700	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000219700	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000575120	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000575120	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000575120	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000575120	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000575120	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-intron	ENST00000575120	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
5UTR-5UTR	ENST00000575120	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-5UTR	ENST00000574594	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-5UTR	ENST00000574594	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-5UTR	ENST00000574594	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-5UTR	ENST00000574594	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-5UTR	ENST00000574594	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-intron	ENST00000574594	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
3UTR-5UTR	ENST00000574594	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000398595	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000398595	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000398595	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000398595	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000398595	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-intron	ENST00000398595	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000398595	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000414777	ENST00000563332		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000414777	ENST00000567695		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000414777	ENST00000564828		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000414777	ENST00000563507		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000414777	ENST00000562334		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-intron	ENST00000414777	ENST00000586768		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000414777	ENST00000399599		TCGA	LD	LUAD	TCGA-78-8660-01A	HMOX2	chr16	4526488	+	CDIP1	chr16	4564665	-
Frame-shit	ENST00000373023	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
Frame-shit	ENST00000373023	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
5CDS-intron	ENST00000373023	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
In-frame	ENST00000373026	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
In-frame	ENST00000373026	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
5CDS-intron	ENST00000373026	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
Frame-shit	ENST00000373024	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
Frame-shit	ENST00000373024	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
5CDS-intron	ENST00000373024	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000373021	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000373021	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-intron	ENST00000373021	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
In-frame	ENST00000373027	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
In-frame	ENST00000373027	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
5CDS-intron	ENST00000373027	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000458109	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000458109	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-intron	ENST00000458109	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000467066	ENST00000373019		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-3CDS	ENST00000467066	ENST00000448721		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
intron-intron	ENST00000467066	ENST00000489537		TCGA	LD	LUAD	TCGA-78-8660-01A	INPP5B	chr1	38338602	-	SF3A3	chr1	38435407	-
In-frame	ENST00000356286	ENST00000217246		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
In-frame	ENST00000356286	ENST00000310348		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000356286	ENST00000464883		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000356286	ENST00000402914		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000356286	ENST00000378058		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000356286	ENST00000407045		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
Frame-shit	ENST00000353660	ENST00000217246		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
Frame-shit	ENST00000353660	ENST00000310348		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000353660	ENST00000464883		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000353660	ENST00000402914		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000353660	ENST00000378058		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000353660	ENST00000407045		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5UTR-3CDS	ENST00000382181	ENST00000217246		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5UTR-3CDS	ENST00000382181	ENST00000310348		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5UTR-intron	ENST00000382181	ENST00000464883		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5UTR-intron	ENST00000382181	ENST00000402914		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5UTR-intron	ENST00000382181	ENST00000378058		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5UTR-intron	ENST00000382181	ENST00000407045		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
In-frame	ENST00000475269	ENST00000217246		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
In-frame	ENST00000475269	ENST00000310348		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000475269	ENST00000464883		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000475269	ENST00000402914		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000475269	ENST00000378058		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000475269	ENST00000407045		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
3UTR-3CDS	ENST00000400245	ENST00000217246		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
3UTR-3CDS	ENST00000400245	ENST00000310348		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
3UTR-intron	ENST00000400245	ENST00000464883		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
3UTR-intron	ENST00000400245	ENST00000402914		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
3UTR-intron	ENST00000400245	ENST00000378058		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
3UTR-intron	ENST00000400245	ENST00000407045		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
Frame-shit	ENST00000400247	ENST00000217246		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
Frame-shit	ENST00000400247	ENST00000310348		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000400247	ENST00000464883		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000400247	ENST00000402914		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000400247	ENST00000378058		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
5CDS-intron	ENST00000400247	ENST00000407045		TCGA	LD	LUAD	TCGA-78-8660-01A	RBCK1	chr20	389423	+	MACROD2	chr20	14474125	+
intron-3CDS	ENST00000568606	ENST00000305560		TCGA	LD	LUAD	TCGA-78-8662-01A	SQRDL	chr15	45927306	+	SPATA5L1	chr15	45697518	+
intron-3CDS	ENST00000568606	ENST00000559860		TCGA	LD	LUAD	TCGA-78-8662-01A	SQRDL	chr15	45927306	+	SPATA5L1	chr15	45697518	+
intron-intron	ENST00000568606	ENST00000533841		TCGA	LD	LUAD	TCGA-78-8662-01A	SQRDL	chr15	45927306	+	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000260324	ENST00000305560		TCGA	LD	LUAD	TCGA-78-8662-01A	SQRDL	chr15	45927306	+	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000260324	ENST00000559860		TCGA	LD	LUAD	TCGA-78-8662-01A	SQRDL	chr15	45927306	+	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000260324	ENST00000533841		TCGA	LD	LUAD	TCGA-78-8662-01A	SQRDL	chr15	45927306	+	SPATA5L1	chr15	45697518	+
intron-intron	ENST00000602550	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602550	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602550	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602550	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000438412	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000438412	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000438412	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000438412	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000444126	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000444126	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000444126	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000444126	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000449544	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000449544	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000449544	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000449544	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000454129	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000454129	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000454129	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000454129	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000454269	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000454269	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000454269	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000454269	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000426882	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000426882	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000426882	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000426882	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000412685	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000412685	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000412685	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
5UTR-intron	ENST00000412685	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000413358	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000413358	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000413358	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000413358	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602290	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602290	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602290	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602290	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602498	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602498	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602498	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602498	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602591	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602591	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602591	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602591	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602698	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602698	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602698	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602698	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602861	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602861	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602861	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602861	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602319	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602319	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602319	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602319	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602516	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602516	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602516	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000602516	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000421520	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000421520	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000421520	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000421520	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000416289	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000416289	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000416289	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000416289	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000458584	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000458584	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000458584	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000458584	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443909	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443909	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443909	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443909	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443079	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443079	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443079	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000443079	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000432895	ENST00000486436		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000432895	ENST00000370869		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000432895	ENST00000259782		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
intron-intron	ENST00000432895	ENST00000370864		TCGA	LD	LUAD	TCGA-80-5607-01A	HCG18	chr6	30262248	-	TINAG	chr6	54254589	+
In-frame	ENST00000262030	ENST00000486207		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000262030	ENST00000361010		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000262030	ENST00000359642		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000262030	ENST00000331587		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000262030	ENST00000396372		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
In-frame	ENST00000552919	ENST00000486207		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000552919	ENST00000361010		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000552919	ENST00000359642		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000552919	ENST00000331587		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
5CDS-5UTR	ENST00000552919	ENST00000396372		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
intron-3CDS	ENST00000550162	ENST00000486207		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
intron-5UTR	ENST00000550162	ENST00000361010		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
intron-5UTR	ENST00000550162	ENST00000359642		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
intron-5UTR	ENST00000550162	ENST00000331587		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
intron-5UTR	ENST00000550162	ENST00000396372		TCGA	LD	LUAD	TCGA-80-5608-01A	ATP5B	chr12	57039621	-	CALCA	chr11	14992747	-
In-frame	ENST00000368226	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000368226	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000368226	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000368227	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000368227	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000368227	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000532331	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000532331	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000532331	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000368213	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000368213	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000368213	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000368210	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000368210	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000368210	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000368215	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000368215	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000368215	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000368207	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000368207	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000368207	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000524481	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5UTR-intron	ENST00000524481	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000524481	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
intron-3CDS	ENST00000525459	ENST00000267843		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
intron-intron	ENST00000525459	ENST00000560270		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
intron-3UTR	ENST00000525459	ENST00000560704		TCGA	LD	LUAD	TCGA-80-5608-01A	PTPRK	chr6	128505577	-	FGF7	chr15	49775348	+
In-frame	ENST00000519937	ENST00000392514		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
In-frame	ENST00000519937	ENST00000551150		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000519937	ENST00000552292		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000519937	ENST00000313104		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000519937	ENST00000546989		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000519937	ENST00000228306		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000519937	ENST00000550296		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000342375	ENST00000392514		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000342375	ENST00000551150		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000342375	ENST00000552292		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000342375	ENST00000313104		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000342375	ENST00000546989		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000342375	ENST00000228306		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000342375	ENST00000550296		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000393822	ENST00000392514		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000393822	ENST00000551150		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000393822	ENST00000552292		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000393822	ENST00000313104		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000393822	ENST00000546989		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000393822	ENST00000228306		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000393822	ENST00000550296		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000409383	ENST00000392514		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000409383	ENST00000551150		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000409383	ENST00000552292		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000409383	ENST00000313104		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000409383	ENST00000546989		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000409383	ENST00000228306		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
5CDS-intron	ENST00000409383	ENST00000550296		TCGA	LD	LUAD	TCGA-80-5608-01A	SFTPB	chr2	85889152	-	RPLP0	chr12	120636434	-
Frame-shit	ENST00000264335	ENST00000355530		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
Frame-shit	ENST00000264335	ENST00000333476		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000264335	ENST00000576069		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
In-frame	ENST00000571732	ENST00000355530		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
In-frame	ENST00000571732	ENST00000333476		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000571732	ENST00000576069		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-3CDS	ENST00000573026	ENST00000355530		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-3CDS	ENST00000573026	ENST00000333476		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-intron	ENST00000573026	ENST00000576069		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-3CDS	ENST00000575977	ENST00000355530		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-3CDS	ENST00000575977	ENST00000333476		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-intron	ENST00000575977	ENST00000576069		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-3CDS	ENST00000498643	ENST00000355530		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-3CDS	ENST00000498643	ENST00000333476		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
intron-intron	ENST00000498643	ENST00000576069		TCGA	LD	LUAD	TCGA-80-5611-01A	YWHAE	chr17	1264386	-	SPNS3	chr17	4381867	+
5UTR-3UTR	ENST00000329665	ENST00000595830		TCGA	LD	LUAD	TCGA-80-5611-01A	ZSCAN22	chr19	58838480	+	ZNF418	chr19	58434657	-
5UTR-3UTR	ENST00000329665	ENST00000396147		TCGA	LD	LUAD	TCGA-80-5611-01A	ZSCAN22	chr19	58838480	+	ZNF418	chr19	58434657	-
5UTR-intron	ENST00000329665	ENST00000599086		TCGA	LD	LUAD	TCGA-80-5611-01A	ZSCAN22	chr19	58838480	+	ZNF418	chr19	58434657	-
5UTR-3UTR	ENST00000329665	ENST00000425570		TCGA	LD	LUAD	TCGA-80-5611-01A	ZSCAN22	chr19	58838480	+	ZNF418	chr19	58434657	-
5UTR-3UTR	ENST00000329665	ENST00000600989		TCGA	LD	LUAD	TCGA-80-5611-01A	ZSCAN22	chr19	58838480	+	ZNF418	chr19	58434657	-
5UTR-intron	ENST00000329665	ENST00000599852		TCGA	LD	LUAD	TCGA-80-5611-01A	ZSCAN22	chr19	58838480	+	ZNF418	chr19	58434657	-
In-frame	ENST00000388890	ENST00000360578		TCGA	LD	LUAD	TCGA-83-5908-01A	BRD9	chr5	886707	-	TPPP	chr5	666238	-
In-frame	ENST00000323510	ENST00000360578		TCGA	LD	LUAD	TCGA-83-5908-01A	BRD9	chr5	886707	-	TPPP	chr5	666238	-
In-frame	ENST00000483173	ENST00000360578		TCGA	LD	LUAD	TCGA-83-5908-01A	BRD9	chr5	886707	-	TPPP	chr5	666238	-
In-frame	ENST00000467963	ENST00000360578		TCGA	LD	LUAD	TCGA-83-5908-01A	BRD9	chr5	886707	-	TPPP	chr5	666238	-
Frame-shit	ENST00000435709	ENST00000360578		TCGA	LD	LUAD	TCGA-83-5908-01A	BRD9	chr5	886707	-	TPPP	chr5	666238	-
5UTR-3CDS	ENST00000494422	ENST00000360578		TCGA	LD	LUAD	TCGA-83-5908-01A	BRD9	chr5	886707	-	TPPP	chr5	666238	-
In-frame	ENST00000449606	ENST00000262291		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000449606	ENST00000537567		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000449606	ENST00000539763		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000449606	ENST00000536180		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000449606	ENST00000545362		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5CDS-intron	ENST00000449606	ENST00000588617		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000563459	ENST00000262291		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000563459	ENST00000537567		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000563459	ENST00000539763		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000563459	ENST00000536180		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
Frame-shit	ENST00000563459	ENST00000545362		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5CDS-intron	ENST00000563459	ENST00000588617		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000564987	ENST00000262291		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000564987	ENST00000537567		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000564987	ENST00000539763		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000564987	ENST00000536180		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-3CDS	ENST00000564987	ENST00000545362		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-intron	ENST00000564987	ENST00000588617		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000564501	ENST00000262291		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000564501	ENST00000537567		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000564501	ENST00000539763		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000564501	ENST00000536180		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000564501	ENST00000545362		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5CDS-intron	ENST00000564501	ENST00000588617		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000563232	ENST00000262291		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000563232	ENST00000537567		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000563232	ENST00000539763		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000563232	ENST00000536180		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
In-frame	ENST00000563232	ENST00000545362		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5CDS-intron	ENST00000563232	ENST00000588617		TCGA	LD	LUAD	TCGA-83-5908-01A	EARS2	chr16	23555835	-	VMP1	chr17	57915656	+
5UTR-intron	ENST00000586659	ENST00000586702		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000586659	ENST00000294618		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000586659	ENST00000319867		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000355150	ENST00000586702		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000355150	ENST00000294618		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000355150	ENST00000319867		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000432929	ENST00000586702		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000432929	ENST00000294618		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000432929	ENST00000319867		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000587317	ENST00000586702		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000587317	ENST00000294618		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000587317	ENST00000319867		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000589359	ENST00000586702		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000589359	ENST00000294618		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
5UTR-intron	ENST00000589359	ENST00000319867		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000589894	ENST00000586702		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000589894	ENST00000294618		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
intron-intron	ENST00000589894	ENST00000319867		TCGA	LD	LUAD	TCGA-83-5908-01A	KANK2	chr19	11308160	-	DOCK6	chr19	11315006	-
Frame-shit	ENST00000397786	ENST00000217320		TCGA	LD	LUAD	TCGA-83-5908-01A	MED13	chr17	60129898	-	TLDC2	chr20	35515858	+
Frame-shit	ENST00000397786	ENST00000602922		TCGA	LD	LUAD	TCGA-83-5908-01A	MED13	chr17	60129898	-	TLDC2	chr20	35515858	+
intron-3CDS	ENST00000580896	ENST00000217320		TCGA	LD	LUAD	TCGA-83-5908-01A	MED13	chr17	60129898	-	TLDC2	chr20	35515858	+
intron-3CDS	ENST00000580896	ENST00000602922		TCGA	LD	LUAD	TCGA-83-5908-01A	MED13	chr17	60129898	-	TLDC2	chr20	35515858	+
Frame-shit	ENST00000262878	ENST00000237530		TCGA	LD	LUAD	TCGA-83-5908-01A	SAMHD1	chr20	35532560	-	RPN2	chr20	35812583	+
Frame-shit	ENST00000262878	ENST00000373622		TCGA	LD	LUAD	TCGA-83-5908-01A	SAMHD1	chr20	35532560	-	RPN2	chr20	35812583	+
5CDS-intron	ENST00000262878	ENST00000470352		TCGA	LD	LUAD	TCGA-83-5908-01A	SAMHD1	chr20	35532560	-	RPN2	chr20	35812583	+
intron-3CDS	ENST00000373694	ENST00000237530		TCGA	LD	LUAD	TCGA-83-5908-01A	SAMHD1	chr20	35532560	-	RPN2	chr20	35812583	+
intron-3CDS	ENST00000373694	ENST00000373622		TCGA	LD	LUAD	TCGA-83-5908-01A	SAMHD1	chr20	35532560	-	RPN2	chr20	35812583	+
intron-intron	ENST00000373694	ENST00000470352		TCGA	LD	LUAD	TCGA-83-5908-01A	SAMHD1	chr20	35532560	-	RPN2	chr20	35812583	+
Frame-shit	ENST00000392562	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000392562	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000392562	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000392562	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000392562	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
5CDS-intron	ENST00000392562	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316804	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316804	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316804	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316804	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316804	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
5CDS-intron	ENST00000316804	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316615	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316615	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316615	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316615	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
Frame-shit	ENST00000316615	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
5CDS-intron	ENST00000316615	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392563	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392563	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392563	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392563	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392563	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
5CDS-intron	ENST00000392563	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392564	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392564	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392564	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392564	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000392564	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
5CDS-intron	ENST00000392564	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000578961	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000578961	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000578961	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000578961	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000578961	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
5CDS-intron	ENST00000578961	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
intron-3CDS	ENST00000462266	ENST00000416858		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
intron-3CDS	ENST00000462266	ENST00000402418		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
intron-3CDS	ENST00000462266	ENST00000442286		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
intron-3CDS	ENST00000462266	ENST00000320362		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
intron-3CDS	ENST00000462266	ENST00000580994		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
intron-intron	ENST00000462266	ENST00000375261		TCGA	LD	LUAD	TCGA-86-6851-01A	GRB2	chr17	73389632	-	SLC25A19	chr17	73279674	-
In-frame	ENST00000531863	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000531863	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-3UTR	ENST00000531863	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000531863	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000531863	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000532677	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000532677	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-3UTR	ENST00000532677	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000532677	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000532677	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000453114	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000453114	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-3UTR	ENST00000453114	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000453114	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000453114	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000360510	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000360510	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-3UTR	ENST00000360510	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000360510	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000360510	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000541961	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000541961	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-3UTR	ENST00000541961	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000541961	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000541961	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000530165	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
In-frame	ENST00000530165	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-3UTR	ENST00000530165	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000530165	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000530165	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
intron-3CDS	ENST00000533799	ENST00000398645		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
intron-3CDS	ENST00000533799	ENST00000529006		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
intron-3UTR	ENST00000533799	ENST00000526258		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
intron-intron	ENST00000533799	ENST00000308783		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
intron-intron	ENST00000533799	ENST00000530342		TCGA	LD	LUAD	TCGA-86-7701-01A	DPP3	chr11	66264948	+	KDM2A	chr11	66995508	+
5CDS-intron	ENST00000456318	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000456318	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000438240	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
intron-intron	ENST00000460083	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000430783	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000443489	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5UTR-intron	ENST00000452961	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000296223	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000315585		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000266880		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000443047		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000450056		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000537522		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000541837		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000432561		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
5CDS-intron	ENST00000429568	ENST00000541341		TCGA	LD	LUAD	TCGA-86-7701-01A	POLR2H	chr3	184081353	+	CHFR	chr12	133409823	-
In-frame	ENST00000297438	ENST00000220751		TCGA	LD	LUAD	TCGA-86-7711-01A	OSGIN2	chr8	90921949	+	RIPK2	chr8	90801549	+
In-frame	ENST00000297438	ENST00000540020		TCGA	LD	LUAD	TCGA-86-7711-01A	OSGIN2	chr8	90921949	+	RIPK2	chr8	90801549	+
In-frame	ENST00000451899	ENST00000220751		TCGA	LD	LUAD	TCGA-86-7711-01A	OSGIN2	chr8	90921949	+	RIPK2	chr8	90801549	+
In-frame	ENST00000451899	ENST00000540020		TCGA	LD	LUAD	TCGA-86-7711-01A	OSGIN2	chr8	90921949	+	RIPK2	chr8	90801549	+
In-frame	ENST00000520659	ENST00000220751		TCGA	LD	LUAD	TCGA-86-7711-01A	OSGIN2	chr8	90921949	+	RIPK2	chr8	90801549	+
In-frame	ENST00000520659	ENST00000540020		TCGA	LD	LUAD	TCGA-86-7711-01A	OSGIN2	chr8	90921949	+	RIPK2	chr8	90801549	+
Frame-shit	ENST00000400556	ENST00000323011		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000400556	ENST00000536984		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000400556	ENST00000397968		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000400556	ENST00000581601		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
Frame-shit	ENST00000400555	ENST00000323011		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000400555	ENST00000536984		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000400555	ENST00000397968		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000400555	ENST00000581601		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
Frame-shit	ENST00000580583	ENST00000323011		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000580583	ENST00000536984		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000580583	ENST00000397968		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5CDS-intron	ENST00000580583	ENST00000581601		TCGA	LD	LUAD	TCGA-86-7711-01A	PPP4R1	chr18	9577062	-	CDH7	chr18	63547637	+
5UTR-intron	ENST00000586448	ENST00000561978		TCGA	LD	LUAD	TCGA-86-7713-01A	SLC14A2	chr18	42793156	+	PCAT1	chr8	128018800	+
intron-intron	ENST00000255226	ENST00000561978		TCGA	LD	LUAD	TCGA-86-7713-01A	SLC14A2	chr18	42793156	+	PCAT1	chr8	128018800	+
intron-intron	ENST00000589658	ENST00000561978		TCGA	LD	LUAD	TCGA-86-7713-01A	SLC14A2	chr18	42793156	+	PCAT1	chr8	128018800	+
Frame-shit	ENST00000283943	ENST00000260947		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000283943	ENST00000449967		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000283943	ENST00000432456		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
5CDS-intron	ENST00000283943	ENST00000471787		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000389045	ENST00000260947		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000389045	ENST00000449967		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000389045	ENST00000432456		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
5CDS-intron	ENST00000389045	ENST00000471787		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000389044	ENST00000260947		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000389044	ENST00000449967		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000389044	ENST00000432456		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
5CDS-intron	ENST00000389044	ENST00000471787		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000543084	ENST00000260947		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000543084	ENST00000449967		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000543084	ENST00000432456		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
5CDS-intron	ENST00000543084	ENST00000471787		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000409677	ENST00000260947		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000409677	ENST00000449967		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
Frame-shit	ENST00000409677	ENST00000432456		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
5CDS-intron	ENST00000409677	ENST00000471787		TCGA	LD	LUAD	TCGA-86-7953-01A	TRIP12	chr2	230744698	-	BARD1	chr2	215595232	-
5UTR-3CDS	ENST00000550487	ENST00000378308		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000550487	ENST00000324545		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000317943	ENST00000378308		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000317943	ENST00000324545		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000550654	ENST00000378308		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000550654	ENST00000324545		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000548985	ENST00000378308		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
5UTR-3CDS	ENST00000548985	ENST00000324545		TCGA	LD	LUAD	TCGA-86-7954-01A	COX14	chr12	50506084	+	USP9X	chrX	41082470	+
intron-3CDS	ENST00000413953	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000413953	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000413953	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000413953	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000413953	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-intron	ENST00000413953	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-3CDS	ENST00000347140	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-3CDS	ENST00000347140	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-3CDS	ENST00000347140	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-5UTR	ENST00000347140	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-5UTR	ENST00000347140	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-intron	ENST00000347140	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000358907	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000358907	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000358907	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000358907	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000358907	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-intron	ENST00000358907	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-3CDS	ENST00000402412	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-3CDS	ENST00000402412	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-3CDS	ENST00000402412	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-5UTR	ENST00000402412	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-5UTR	ENST00000402412	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
5UTR-intron	ENST00000402412	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000441731	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000441731	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000441731	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000441731	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000441731	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-intron	ENST00000441731	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000403821	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000403821	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000403821	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000403821	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000403821	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-intron	ENST00000403821	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000546843	ENST00000298892		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000546843	ENST00000395805		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000546843	ENST00000251071		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000546843	ENST00000308433		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-5UTR	ENST00000546843	ENST00000417045		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-intron	ENST00000546843	ENST00000538387		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	CAPRIN2	chr12	30904067	-
intron-3CDS	ENST00000413953	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000413953	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000413953	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000413953	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000413953	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000413953	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000413953	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000413953	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000413953	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000413953	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000413953	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000413953	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000347140	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000347140	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000347140	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000347140	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000347140	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000347140	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000347140	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000347140	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000347140	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000347140	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000347140	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000347140	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000358907	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000358907	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000358907	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000358907	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000358907	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000358907	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000358907	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000358907	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000358907	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000358907	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000358907	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000358907	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000402412	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000402412	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000402412	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000402412	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-3CDS	ENST00000402412	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000402412	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000402412	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000402412	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000402412	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-5UTR	ENST00000402412	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000402412	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
5UTR-intron	ENST00000402412	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000441731	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000441731	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000441731	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000441731	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000441731	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000441731	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000441731	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000441731	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000441731	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000441731	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000441731	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000441731	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000403821	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000403821	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000403821	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000403821	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000403821	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000403821	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000403821	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000403821	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000403821	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000403821	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000403821	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000403821	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000546843	ENST00000309364		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000546843	ENST00000359180		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000546843	ENST00000317589		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000546843	ENST00000355397		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-3CDS	ENST00000546843	ENST00000429027		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000546843	ENST00000539256		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000546843	ENST00000299275		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000546843	ENST00000538714		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000546843	ENST00000543806		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-5UTR	ENST00000546843	ENST00000424268		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000546843	ENST00000540972		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
intron-intron	ENST00000546843	ENST00000510738		TCGA	LD	LUAD	TCGA-86-7954-01A	R3HDM2	chr12	57789532	-	PLEKHA5	chr12	19406874	+
In-frame	ENST00000396037	ENST00000261200		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
In-frame	ENST00000396037	ENST00000261201		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
In-frame	ENST00000396037	ENST00000345162		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
5CDS-intron	ENST00000396037	ENST00000326684		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
5CDS-intron	ENST00000396037	ENST00000538350		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000539510	ENST00000261200		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000539510	ENST00000261201		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000539510	ENST00000345162		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000539510	ENST00000326684		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000539510	ENST00000538350		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000536558	ENST00000261200		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000536558	ENST00000261201		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000536558	ENST00000345162		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000536558	ENST00000326684		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000536558	ENST00000538350		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000404299	ENST00000261200		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000404299	ENST00000261201		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000404299	ENST00000345162		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000404299	ENST00000326684		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000404299	ENST00000538350		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000381424	ENST00000261200		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000381424	ENST00000261201		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-3CDS	ENST00000381424	ENST00000345162		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000381424	ENST00000326684		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
intron-intron	ENST00000381424	ENST00000538350		TCGA	LD	LUAD	TCGA-86-7954-01A	ST8SIA1	chr12	22408214	-	ABCC9	chr12	21981994	-
5CDS-3UTR	ENST00000300896	ENST00000311177		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
5CDS-intron	ENST00000300896	ENST00000550387		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
5CDS-3UTR	ENST00000592339	ENST00000311177		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
5CDS-intron	ENST00000592339	ENST00000550387		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
5CDS-3UTR	ENST00000393003	ENST00000311177		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
5CDS-intron	ENST00000393003	ENST00000550387		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
intron-3UTR	ENST00000586881	ENST00000311177		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
intron-intron	ENST00000586881	ENST00000550387		TCGA	LD	LUAD	TCGA-86-7954-01A	USP32	chr17	58332536	-	HOXB9	chr17	46699461	-
5CDS-intron	ENST00000296543	ENST00000506482		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
5CDS-intron	ENST00000296543	ENST00000295268		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
5CDS-intron	ENST00000398947	ENST00000506482		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
5CDS-intron	ENST00000398947	ENST00000295268		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
intron-intron	ENST00000480277	ENST00000506482		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
intron-intron	ENST00000480277	ENST00000295268		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
intron-intron	ENST00000515576	ENST00000506482		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
intron-intron	ENST00000515576	ENST00000295268		TCGA	LD	LUAD	TCGA-86-7955-01A	NAA15	chr4	140283091	+	STPG2	chr4	99055610	-
5CDS-5UTR	ENST00000326317	ENST00000310924		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000326317	ENST00000576768		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000326317	ENST00000340848		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000326317	ENST00000572862		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000326317	ENST00000570373		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-5UTR	ENST00000534910	ENST00000310924		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000534910	ENST00000576768		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000534910	ENST00000340848		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000534910	ENST00000572862		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000534910	ENST00000570373		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-5UTR	ENST00000570923	ENST00000310924		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000570923	ENST00000576768		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000570923	ENST00000340848		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000570923	ENST00000572862		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5CDS-intron	ENST00000570923	ENST00000570373		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-5UTR	ENST00000572208	ENST00000310924		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000572208	ENST00000576768		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000572208	ENST00000340848		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000572208	ENST00000572862		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-intron	ENST00000572208	ENST00000570373		TCGA	LD	LUAD	TCGA-86-7955-01A	SGSH	chr17	78190831	-	TBC1D16	chr17	77987408	-
5UTR-5UTR	ENST00000316423	ENST00000436693		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
5UTR-5UTR	ENST00000316423	ENST00000381950		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
5UTR-5UTR	ENST00000501493	ENST00000436693		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
5UTR-5UTR	ENST00000501493	ENST00000381950		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
intron-5UTR	ENST00000506179	ENST00000436693		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
intron-5UTR	ENST00000506179	ENST00000381950		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
5UTR-5UTR	ENST00000507089	ENST00000436693		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
5UTR-5UTR	ENST00000507089	ENST00000381950		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
intron-5UTR	ENST00000515398	ENST00000436693		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
intron-5UTR	ENST00000515398	ENST00000381950		TCGA	LD	LUAD	TCGA-86-7955-01A	UGDH	chr4	39528903	-	TLR6	chr4	38831158	-
intron-5UTR	ENST00000298834	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000298834	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000298834	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000426438	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000426438	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000426438	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000314845	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000314845	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000314845	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000533727	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000533727	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000533727	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000534300	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000534300	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000534300	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000458649	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000458649	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000458649	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000528950	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000528950	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
5UTR-5UTR	ENST00000528950	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000529963	ENST00000392951		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000529963	ENST00000530649		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-5UTR	ENST00000529963	ENST00000532870		TCGA	LD	LUAD	TCGA-86-8055-01A	AMBRA1	chr11	46615378	-	TAGLN	chr11	117073718	+
intron-3UTR	ENST00000588752	ENST00000586725		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000588752	ENST00000269195		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000588752	ENST00000591081		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000588752	ENST00000537549		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000589238	ENST00000586725		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000589238	ENST00000269195		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000589238	ENST00000591081		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000589238	ENST00000537549		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000269159	ENST00000586725		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
5CDS-3UTR	ENST00000269159	ENST00000269195		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000269159	ENST00000591081		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
5CDS-intron	ENST00000269159	ENST00000537549		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000588927	ENST00000586725		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-3UTR	ENST00000588927	ENST00000269195		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000588927	ENST00000591081		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
intron-intron	ENST00000588927	ENST00000537549		TCGA	LD	LUAD	TCGA-86-8055-01A	IMPA2	chr18	11981764	+	GALNT1	chr18	33234524	+
In-frame	ENST00000176763	ENST00000519560		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
In-frame	ENST00000176763	ENST00000332966		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
In-frame	ENST00000176763	ENST00000404867		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
5CDS-intron	ENST00000176763	ENST00000521130		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
intron-3CDS	ENST00000517775	ENST00000519560		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
intron-3CDS	ENST00000517775	ENST00000332966		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
intron-3CDS	ENST00000517775	ENST00000404867		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
intron-intron	ENST00000517775	ENST00000521130		TCGA	LD	LUAD	TCGA-86-8056-01A	STK10	chr5	171583628	-	SLIT3	chr5	168127684	-
intron-3UTR	ENST00000536230	ENST00000497512		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000536230	ENST00000316355		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000536230	ENST00000354403		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000536230	ENST00000502280		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000536230	ENST00000395640		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000536230	ENST00000509972		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000392282	ENST00000497512		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000392282	ENST00000316355		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000392282	ENST00000354403		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000392282	ENST00000502280		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000392282	ENST00000395640		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000392282	ENST00000509972		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000538427	ENST00000497512		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000538427	ENST00000316355		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000538427	ENST00000354403		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000538427	ENST00000502280		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000538427	ENST00000395640		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000538427	ENST00000509972		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000367456	ENST00000497512		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000367456	ENST00000316355		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000367456	ENST00000354403		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000367456	ENST00000502280		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000367456	ENST00000395640		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000367456	ENST00000509972		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000461481	ENST00000497512		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000461481	ENST00000316355		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000461481	ENST00000354403		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000461481	ENST00000502280		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000461481	ENST00000395640		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000461481	ENST00000509972		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000286332	ENST00000497512		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000286332	ENST00000316355		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000286332	ENST00000354403		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000286332	ENST00000502280		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000286332	ENST00000395640		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000286332	ENST00000509972		TCGA	LD	LUAD	TCGA-86-8056-01A	TAB2	chr6	149639151	+	CCNG2	chr4	78079686	+
In-frame	ENST00000350796	ENST00000295213		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
5CDS-intron	ENST00000350796	ENST00000419395		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
5CDS-intron	ENST00000350796	ENST00000506829		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
intron-3CDS	ENST00000396741	ENST00000295213		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
intron-intron	ENST00000396741	ENST00000419395		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
intron-intron	ENST00000396741	ENST00000506829		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
intron-3CDS	ENST00000488964	ENST00000295213		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
intron-intron	ENST00000488964	ENST00000419395		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
intron-intron	ENST00000488964	ENST00000506829		TCGA	LD	LUAD	TCGA-86-8074-01A	CYTH3	chr7	6217454	-	SPATA18	chr4	52935987	+
5CDS-intron	ENST00000297071	ENST00000403058		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000297071	ENST00000518318		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000297071	ENST00000517348		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000297071	ENST00000559001		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-3UTR	ENST00000297071	ENST00000464276		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000392502	ENST00000403058		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000392502	ENST00000518318		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000392502	ENST00000517348		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000392502	ENST00000559001		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-3UTR	ENST00000392502	ENST00000464276		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000538367	ENST00000403058		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000538367	ENST00000518318		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000538367	ENST00000517348		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-intron	ENST00000538367	ENST00000559001		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
5CDS-3UTR	ENST00000538367	ENST00000464276		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
intron-intron	ENST00000474586	ENST00000403058		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
intron-intron	ENST00000474586	ENST00000518318		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
intron-intron	ENST00000474586	ENST00000517348		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
intron-intron	ENST00000474586	ENST00000559001		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
intron-3UTR	ENST00000474586	ENST00000464276		TCGA	LD	LUAD	TCGA-86-8075-01A	TRA2A	chr7	23545365	-	POU6F2	chr7	39171978	+
In-frame	ENST00000368508	ENST00000377795		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
Frame-shit	ENST00000368508	ENST00000353334		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
5CDS-intron	ENST00000368508	ENST00000524315		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
5CDS-intron	ENST00000368508	ENST00000009530		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
In-frame	ENST00000368507	ENST00000377795		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
Frame-shit	ENST00000368507	ENST00000353334		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
5CDS-intron	ENST00000368507	ENST00000524315		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
5CDS-intron	ENST00000368507	ENST00000009530		TCGA	LD	LUAD	TCGA-86-8278-01A	ROS1	chr6	117700222	-	CD74	chr5	149782188	-
3UTR-3CDS	ENST00000578312	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
3UTR-intron	ENST00000578312	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
Frame-shit	ENST00000262394	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
5CDS-intron	ENST00000262394	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
Frame-shit	ENST00000579733	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
5CDS-intron	ENST00000579733	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
Frame-shit	ENST00000583193	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
5CDS-intron	ENST00000583193	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
Frame-shit	ENST00000581185	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
5CDS-intron	ENST00000581185	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
Frame-shit	ENST00000427287	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
5CDS-intron	ENST00000427287	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
Frame-shit	ENST00000348811	ENST00000327381		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
5CDS-intron	ENST00000348811	ENST00000518261		TCGA	LD	LUAD	TCGA-86-8279-01A	WSB1	chr17	25621461	+	XKR4	chr8	56270238	+
In-frame	ENST00000311637	ENST00000217246		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
In-frame	ENST00000311637	ENST00000310348		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000311637	ENST00000464883		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000311637	ENST00000402914		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000311637	ENST00000378058		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000311637	ENST00000407045		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
In-frame	ENST00000338821	ENST00000217246		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
In-frame	ENST00000338821	ENST00000310348		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000338821	ENST00000464883		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000338821	ENST00000402914		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000338821	ENST00000378058		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000338821	ENST00000407045		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
In-frame	ENST00000402822	ENST00000217246		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
In-frame	ENST00000402822	ENST00000310348		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000402822	ENST00000464883		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000402822	ENST00000402914		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000402822	ENST00000378058		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000402822	ENST00000407045		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000477492	ENST00000217246		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000477492	ENST00000310348		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000477492	ENST00000464883		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000477492	ENST00000402914		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000477492	ENST00000378058		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000477492	ENST00000407045		TCGA	LD	LUAD	TCGA-86-8280-01A	ATP9A	chr20	50244139	-	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000521861	ENST00000320552		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000521861	ENST00000308811		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000521861	ENST00000398612		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-3UTR	ENST00000521861	ENST00000521238		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000276682	ENST00000320552		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000276682	ENST00000308811		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000276682	ENST00000398612		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5CDS-3UTR	ENST00000276682	ENST00000521238		TCGA	LD	LUAD	TCGA-86-8280-01A	EIF3H	chr8	117767905	-	ZNF596	chr8	190824	+
5UTR-3CDS	ENST00000561069	ENST00000556948		TCGA	LD	LUAD	TCGA-86-8358-01A	APBA2	chr15	29288009	+	NBEAP1	chr15	20876597	-
5UTR-3CDS	ENST00000558402	ENST00000556948		TCGA	LD	LUAD	TCGA-86-8358-01A	APBA2	chr15	29288009	+	NBEAP1	chr15	20876597	-
5UTR-3CDS	ENST00000558330	ENST00000556948		TCGA	LD	LUAD	TCGA-86-8358-01A	APBA2	chr15	29288009	+	NBEAP1	chr15	20876597	-
5UTR-3CDS	ENST00000411764	ENST00000556948		TCGA	LD	LUAD	TCGA-86-8358-01A	APBA2	chr15	29288009	+	NBEAP1	chr15	20876597	-
5UTR-3CDS	ENST00000558259	ENST00000556948		TCGA	LD	LUAD	TCGA-86-8358-01A	APBA2	chr15	29288009	+	NBEAP1	chr15	20876597	-
Frame-shit	ENST00000409074	ENST00000551177		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000409074	ENST00000546892		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000409074	ENST00000455920		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
5CDS-intron	ENST00000409074	ENST00000549809		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000556253	ENST00000551177		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000556253	ENST00000546892		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000556253	ENST00000455920		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
5CDS-intron	ENST00000556253	ENST00000549809		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000247618	ENST00000551177		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000247618	ENST00000546892		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000247618	ENST00000455920		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
5CDS-intron	ENST00000247618	ENST00000549809		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
3UTR-3CDS	ENST00000477116	ENST00000551177		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
3UTR-3CDS	ENST00000477116	ENST00000546892		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
3UTR-3CDS	ENST00000477116	ENST00000455920		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
3UTR-intron	ENST00000477116	ENST00000549809		TCGA	LD	LUAD	TCGA-86-8358-01A	APOPT1	chr14	104040507	+	ASPG	chr14	104578257	+
Frame-shit	ENST00000378847	ENST00000358621		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378847	ENST00000357447		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378847	ENST00000378503		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378847	ENST00000342409		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378847	ENST00000493380		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378847	ENST00000475141		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378847	ENST00000492155		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-3CDS	ENST00000487696	ENST00000358621		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-3CDS	ENST00000487696	ENST00000357447		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-3CDS	ENST00000487696	ENST00000378503		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-3CDS	ENST00000487696	ENST00000342409		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-intron	ENST00000487696	ENST00000493380		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-intron	ENST00000487696	ENST00000475141		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
3UTR-intron	ENST00000487696	ENST00000492155		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378845	ENST00000358621		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378845	ENST00000357447		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378845	ENST00000378503		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378845	ENST00000342409		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378845	ENST00000493380		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378845	ENST00000475141		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378845	ENST00000492155		TCGA	LD	LUAD	TCGA-86-8358-01A	CAMK1D	chr10	12708809	+	FRMD4A	chr10	13900912	-
5CDS-5UTR	ENST00000506447	ENST00000415664		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5CDS-5UTR	ENST00000506447	ENST00000298232		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5CDS-5UTR	ENST00000506447	ENST00000342420		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5CDS-5UTR	ENST00000506447	ENST00000361285		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5UTR-5UTR	ENST00000325971	ENST00000415664		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5UTR-5UTR	ENST00000325971	ENST00000298232		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5UTR-5UTR	ENST00000325971	ENST00000342420		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5UTR-5UTR	ENST00000325971	ENST00000361285		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000430049	ENST00000415664		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000430049	ENST00000298232		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000430049	ENST00000342420		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000430049	ENST00000361285		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000540847	ENST00000415664		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000540847	ENST00000298232		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000540847	ENST00000342420		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
intron-5UTR	ENST00000540847	ENST00000361285		TCGA	LD	LUAD	TCGA-86-8358-01A	CEP192	chr18	12999587	+	TPTE	chr21	10921995	+
5CDS-5UTR	ENST00000354336	ENST00000327451		TCGA	LD	LUAD	TCGA-86-8358-01A	CRKL	chr22	21288532	+	SLC25A18	chr22	18062511	+
5CDS-5UTR	ENST00000354336	ENST00000399813		TCGA	LD	LUAD	TCGA-86-8358-01A	CRKL	chr22	21288532	+	SLC25A18	chr22	18062511	+
5CDS-3UTR	ENST00000354336	ENST00000497401		TCGA	LD	LUAD	TCGA-86-8358-01A	CRKL	chr22	21288532	+	SLC25A18	chr22	18062511	+
intron-3CDS	ENST00000216281	ENST00000390559		TCGA	LD	LUAD	TCGA-86-8358-01A	HSP90AA1	chr14	102568212	-	IGHM	chr14	106322322	-
In-frame	ENST00000334701	ENST00000390559		TCGA	LD	LUAD	TCGA-86-8358-01A	HSP90AA1	chr14	102568212	-	IGHM	chr14	106322322	-
intron-3CDS	ENST00000441629	ENST00000390559		TCGA	LD	LUAD	TCGA-86-8358-01A	HSP90AA1	chr14	102568212	-	IGHM	chr14	106322322	-
intron-3CDS	ENST00000558600	ENST00000390559		TCGA	LD	LUAD	TCGA-86-8358-01A	HSP90AA1	chr14	102568212	-	IGHM	chr14	106322322	-
intron-3CDS	ENST00000341701	ENST00000590898		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000341701	ENST00000399022		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000341701	ENST00000337059		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000341701	ENST00000357384		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000341701	ENST00000588737		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000341701	ENST00000319040		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000341701	ENST00000588459		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000607650	ENST00000590898		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000607650	ENST00000399022		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000607650	ENST00000337059		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000607650	ENST00000357384		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000607650	ENST00000588737		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000607650	ENST00000319040		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000607650	ENST00000588459		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000222270	ENST00000590898		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000222270	ENST00000399022		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000222270	ENST00000337059		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000222270	ENST00000357384		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000222270	ENST00000588737		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000222270	ENST00000319040		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000222270	ENST00000588459		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000420124	ENST00000590898		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000420124	ENST00000399022		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000420124	ENST00000337059		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000420124	ENST00000357384		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-3CDS	ENST00000420124	ENST00000588737		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000420124	ENST00000319040		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
intron-intron	ENST00000420124	ENST00000588459		TCGA	LD	LUAD	TCGA-86-8358-01A	KMT2B	chr19	36226234	+	RPRD1A	chr18	33573231	-
In-frame	ENST00000440884	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000440884	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
In-frame	ENST00000416682	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000416682	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
In-frame	ENST00000429436	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000429436	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
In-frame	ENST00000303622	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000303622	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
In-frame	ENST00000216288	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000216288	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
In-frame	ENST00000553942	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000553942	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
In-frame	ENST00000335102	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
5CDS-5UTR	ENST00000335102	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
3UTR-3CDS	ENST00000561071	ENST00000423312		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
3UTR-5UTR	ENST00000561071	ENST00000315264		TCGA	LD	LUAD	TCGA-86-8358-01A	MARK3	chr14	103894777	+	KIF26A	chr14	104618352	+
Frame-shit	ENST00000336273	ENST00000521689		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
Frame-shit	ENST00000336273	ENST00000254898		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
Frame-shit	ENST00000336273	ENST00000524308		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000336273	ENST00000522025		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000336273	ENST00000520016		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000336273	ENST00000518238		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
Frame-shit	ENST00000519934	ENST00000521689		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
Frame-shit	ENST00000519934	ENST00000254898		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
Frame-shit	ENST00000519934	ENST00000524308		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000519934	ENST00000522025		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000519934	ENST00000520016		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000519934	ENST00000518238		TCGA	LD	LUAD	TCGA-86-8358-01A	MTDH	chr8	98673401	+	MATN2	chr8	98943181	+
Frame-shit	ENST00000569795	ENST00000356056		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000569795	ENST00000444904		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000569795	ENST00000424560		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000569795	ENST00000564571		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000569795	ENST00000566885		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5CDS-5UTR	ENST00000569795	ENST00000563542		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5UTR-3CDS	ENST00000413097	ENST00000356056		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5UTR-3CDS	ENST00000413097	ENST00000444904		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5UTR-3CDS	ENST00000413097	ENST00000424560		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5UTR-3CDS	ENST00000413097	ENST00000564571		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5UTR-3CDS	ENST00000413097	ENST00000566885		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5UTR-5UTR	ENST00000413097	ENST00000563542		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000260376	ENST00000356056		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000260376	ENST00000444904		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000260376	ENST00000424560		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000260376	ENST00000564571		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
Frame-shit	ENST00000260376	ENST00000566885		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5CDS-5UTR	ENST00000260376	ENST00000563542		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
In-frame	ENST00000287196	ENST00000356056		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
In-frame	ENST00000287196	ENST00000444904		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
In-frame	ENST00000287196	ENST00000424560		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
In-frame	ENST00000287196	ENST00000564571		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
In-frame	ENST00000287196	ENST00000566885		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
5CDS-5UTR	ENST00000287196	ENST00000563542		TCGA	LD	LUAD	TCGA-86-8358-01A	PARP6	chr15	72545778	-	MYO9A	chr15	72260466	-
In-frame	ENST00000320578	ENST00000392793		TCGA	LD	LUAD	TCGA-86-8358-01A	RAB39A	chr11	107799521	+	TECTA	chr11	121058541	+
In-frame	ENST00000320578	ENST00000264037		TCGA	LD	LUAD	TCGA-86-8358-01A	RAB39A	chr11	107799521	+	TECTA	chr11	121058541	+
5CDS-intron	ENST00000320578	ENST00000478058		TCGA	LD	LUAD	TCGA-86-8358-01A	RAB39A	chr11	107799521	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000390548	ENST00000236671		TCGA	LD	LUAD	TCGA-86-8668-01A	IGHG1	chr14	106208402	-	CTSD	chr11	1775361	-
Frame-shit	ENST00000297423	ENST00000523111		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000521346		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000517630		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000520809		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000518074	ENST00000523111		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000521346		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000517630		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000520809		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000541342	ENST00000523111		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000521346		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000517630		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000520809		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
3UTR-3CDS	ENST00000521214	ENST00000523111		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000521346		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000517630		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000520809		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000517693	ENST00000523111		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000517693	ENST00000521346		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000517693	ENST00000517630		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000517693	ENST00000520809		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000518060	ENST00000523111		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000521346		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000517630		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000520809		TCGA	LD	LUAD	TCGA-86-8668-01A	SPIDR	chr8	48614577	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000388802	ENST00000510238		TCGA	LD	LUAD	TCGA-86-8668-01A	SRRM3	chr7	75912419	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000326382	ENST00000510238		TCGA	LD	LUAD	TCGA-86-8668-01A	SRRM3	chr7	75912419	+	CASC16	chr16	52624979	-
intron-5UTR	ENST00000464752	ENST00000510238		TCGA	LD	LUAD	TCGA-86-8668-01A	SRRM3	chr7	75912419	+	CASC16	chr16	52624979	-
Frame-shit	ENST00000398970	ENST00000319004		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
In-frame	ENST00000398970	ENST00000437269		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000398970	ENST00000576778		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000300574	ENST00000319004		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000300574	ENST00000437269		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
intron-5UTR	ENST00000300574	ENST00000576778		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000574295	ENST00000319004		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000574295	ENST00000437269		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
intron-5UTR	ENST00000574295	ENST00000576778		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
5UTR-3CDS	ENST00000572145	ENST00000319004		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
5UTR-3CDS	ENST00000572145	ENST00000437269		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
5UTR-5UTR	ENST00000572145	ENST00000576778		TCGA	LD	LUAD	TCGA-86-8669-01A	CRK	chr17	1340084	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000424459	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000424459	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000424459	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000424459	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-5UTR	ENST00000514387	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000514387	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000514387	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000514387	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-5UTR	ENST00000506184	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000506184	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000506184	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000506184	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-5UTR	ENST00000454432	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000454432	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000454432	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000454432	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-5UTR	ENST00000511209	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000511209	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000511209	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000511209	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-5UTR	ENST00000264779	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000264779	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000264779	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000264779	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-5UTR	ENST00000538707	ENST00000267731		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000538707	ENST00000569811		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000538707	ENST00000342314		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
5CDS-intron	ENST00000538707	ENST00000438958		TCGA	LD	LUAD	TCGA-86-8669-01A	GPBP1	chr5	56543042	+	GOLGA8B	chr15	34839183	-
intron-5UTR	ENST00000464356	ENST00000368195		TCGA	LD	LUAD	TCGA-86-8669-01A	MEF2D	chr1	156469224	-	INSRR	chr1	156828485	-
intron-5UTR	ENST00000348159	ENST00000368195		TCGA	LD	LUAD	TCGA-86-8669-01A	MEF2D	chr1	156469224	-	INSRR	chr1	156828485	-
intron-5UTR	ENST00000353795	ENST00000368195		TCGA	LD	LUAD	TCGA-86-8669-01A	MEF2D	chr1	156469224	-	INSRR	chr1	156828485	-
intron-5UTR	ENST00000340875	ENST00000368195		TCGA	LD	LUAD	TCGA-86-8669-01A	MEF2D	chr1	156469224	-	INSRR	chr1	156828485	-
intron-5UTR	ENST00000368240	ENST00000368195		TCGA	LD	LUAD	TCGA-86-8669-01A	MEF2D	chr1	156469224	-	INSRR	chr1	156828485	-
intron-5UTR	ENST00000360595	ENST00000368195		TCGA	LD	LUAD	TCGA-86-8669-01A	MEF2D	chr1	156469224	-	INSRR	chr1	156828485	-
Frame-shit	ENST00000393446	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
Frame-shit	ENST00000265437	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
Frame-shit	ENST00000393451	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
Frame-shit	ENST00000393449	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
Frame-shit	ENST00000323984	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000432298	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000422922	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000487459	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000393443	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000393447	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000393444	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
intron-3CDS	ENST00000465133	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7	chr7	116593745	+	ASZ1	chr7	117024914	-
Frame-shit	ENST00000397750	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7-OT4	chr7	116595207	+	ASZ1	chr7	117025863	-
3UTR-3CDS	ENST00000466018	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7-OT4	chr7	116595207	+	ASZ1	chr7	117025863	-
Frame-shit	ENST00000397751	ENST00000284629		TCGA	LD	LUAD	TCGA-86-8672-01A	ST7-OT4	chr7	116595207	+	ASZ1	chr7	117025863	-
5CDS-5UTR	ENST00000358595	ENST00000326413		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-intron	ENST00000358595	ENST00000479191		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-intron	ENST00000358595	ENST00000426175		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-5UTR	ENST00000354396	ENST00000326413		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-intron	ENST00000354396	ENST00000479191		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-intron	ENST00000354396	ENST00000426175		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5UTR-5UTR	ENST00000515192	ENST00000326413		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5UTR-intron	ENST00000515192	ENST00000479191		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5UTR-intron	ENST00000515192	ENST00000426175		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-5UTR	ENST00000505755	ENST00000326413		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-intron	ENST00000505755	ENST00000479191		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
5CDS-intron	ENST00000505755	ENST00000426175		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
intron-5UTR	ENST00000468970	ENST00000326413		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
intron-intron	ENST00000468970	ENST00000479191		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
intron-intron	ENST00000468970	ENST00000426175		TCGA	LD	LUAD	TCGA-86-8673-01A	ARNT	chr1	150849019	-	RIIAD1	chr1	151685945	+
Frame-shit	ENST00000406775	ENST00000003084		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
Frame-shit	ENST00000406775	ENST00000454343		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
5CDS-intron	ENST00000406775	ENST00000608965		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
Frame-shit	ENST00000342771	ENST00000003084		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
Frame-shit	ENST00000342771	ENST00000454343		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
5CDS-intron	ENST00000342771	ENST00000608965		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
intron-3CDS	ENST00000403018	ENST00000003084		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
intron-3CDS	ENST00000403018	ENST00000454343		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
intron-intron	ENST00000403018	ENST00000608965		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
3UTR-3CDS	ENST00000489774	ENST00000003084		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
3UTR-3CDS	ENST00000489774	ENST00000454343		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
3UTR-intron	ENST00000489774	ENST00000608965		TCGA	LD	LUAD	TCGA-86-8673-01A	AUTS2	chr7	70163606	+	CFTR	chr7	117144307	+
intron-3CDS	ENST00000324189	ENST00000538010		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
intron-3CDS	ENST00000324189	ENST00000261822		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
3UTR-3CDS	ENST00000546192	ENST00000538010		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
3UTR-3CDS	ENST00000546192	ENST00000261822		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
3UTR-3CDS	ENST00000545141	ENST00000538010		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
3UTR-3CDS	ENST00000545141	ENST00000261822		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
intron-3CDS	ENST00000535274	ENST00000538010		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
intron-3CDS	ENST00000535274	ENST00000261822		TCGA	LD	LUAD	TCGA-86-8673-01A	B3GNT4	chr12	122692359	+	BCL7A	chr12	122481792	+
In-frame	ENST00000421905	ENST00000226021		TCGA	LD	LUAD	TCGA-86-8673-01A	PPP1R37	chr19	45596785	+	CACNG1	chr17	65040832	+
In-frame	ENST00000221462	ENST00000226021		TCGA	LD	LUAD	TCGA-86-8673-01A	PPP1R37	chr19	45596785	+	CACNG1	chr17	65040832	+
3UTR-3CDS	ENST00000496125	ENST00000226021		TCGA	LD	LUAD	TCGA-86-8673-01A	PPP1R37	chr19	45596785	+	CACNG1	chr17	65040832	+
5UTR-5UTR	ENST00000324862	ENST00000368985		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-5UTR	ENST00000324862	ENST00000448301		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-intron	ENST00000324862	ENST00000480760		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-5UTR	ENST00000543398	ENST00000368985		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-5UTR	ENST00000543398	ENST00000448301		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-intron	ENST00000543398	ENST00000480760		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-5UTR	ENST00000414970	ENST00000368985		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-5UTR	ENST00000414970	ENST00000448301		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
5UTR-intron	ENST00000414970	ENST00000480760		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
intron-5UTR	ENST00000467329	ENST00000368985		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
intron-5UTR	ENST00000467329	ENST00000448301		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
intron-intron	ENST00000467329	ENST00000480760		TCGA	LD	LUAD	TCGA-86-8673-01A	PRPF3	chr1	150294041	+	CTSS	chr1	150738270	-
Frame-shit	ENST00000334379	ENST00000368357		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
Frame-shit	ENST00000334379	ENST00000392477		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
Frame-shit	ENST00000334379	ENST00000229634		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
5CDS-intron	ENST00000334379	ENST00000487635		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
Frame-shit	ENST00000368332	ENST00000368357		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
Frame-shit	ENST00000368332	ENST00000392477		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
Frame-shit	ENST00000368332	ENST00000229634		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
5CDS-intron	ENST00000368332	ENST00000487635		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-3CDS	ENST00000450358	ENST00000368357		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-3CDS	ENST00000450358	ENST00000392477		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-3CDS	ENST00000450358	ENST00000229634		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-intron	ENST00000450358	ENST00000487635		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-3CDS	ENST00000489934	ENST00000368357		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-3CDS	ENST00000489934	ENST00000392477		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-3CDS	ENST00000489934	ENST00000229634		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
intron-intron	ENST00000489934	ENST00000487635		TCGA	LD	LUAD	TCGA-86-8673-01A	TRMT11	chr6	126334247	+	NCOA7	chr6	126243828	+
5CDS-5UTR	ENST00000316462	ENST00000318203		TCGA	LD	LUAD	TCGA-86-8674-01A	ZNF587B	chr19	58331313	+	ZSCAN4	chr19	58187409	+
intron-5UTR	ENST00000442832	ENST00000318203		TCGA	LD	LUAD	TCGA-86-8674-01A	ZNF587B	chr19	58331313	+	ZSCAN4	chr19	58187409	+
intron-5UTR	ENST00000594901	ENST00000318203		TCGA	LD	LUAD	TCGA-86-8674-01A	ZNF587B	chr19	58331313	+	ZSCAN4	chr19	58187409	+
5CDS-intron	ENST00000347580	ENST00000393223		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000347580	ENST00000346299		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000347580	ENST00000409459		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000347580	ENST00000352297		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000347580	ENST00000484818		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000379853	ENST00000393223		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000379853	ENST00000346299		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000379853	ENST00000409459		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000379853	ENST00000352297		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000379853	ENST00000484818		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000265708	ENST00000393223		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000265708	ENST00000346299		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000265708	ENST00000409459		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000265708	ENST00000352297		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000265708	ENST00000484818		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000521880	ENST00000393223		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000521880	ENST00000346299		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000521880	ENST00000409459		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000521880	ENST00000352297		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
5CDS-intron	ENST00000521880	ENST00000484818		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
intron-intron	ENST00000523181	ENST00000393223		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
intron-intron	ENST00000523181	ENST00000346299		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
intron-intron	ENST00000523181	ENST00000409459		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
intron-intron	ENST00000523181	ENST00000352297		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
intron-intron	ENST00000523181	ENST00000484818		TCGA	LD	LUAD	TCGA-86-A4D0-01A	ADAM2	chr8	39603991	-	MTMR2	chr11	95599650	-
Frame-shit	ENST00000434013	ENST00000261978		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000434013	ENST00000556690		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
5CDS-intron	ENST00000434013	ENST00000557425		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000541064	ENST00000261978		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000541064	ENST00000556690		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
5CDS-intron	ENST00000541064	ENST00000557425		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000555619	ENST00000261978		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000555619	ENST00000556690		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
5CDS-intron	ENST00000555619	ENST00000557425		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000238633	ENST00000261978		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000238633	ENST00000556690		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
5CDS-intron	ENST00000238633	ENST00000557425		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000557510	ENST00000261978		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
Frame-shit	ENST00000557510	ENST00000556690		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
5CDS-intron	ENST00000557510	ENST00000557425		TCGA	LD	LUAD	TCGA-86-A4P7-01A	NPC2	chr14	74959896	-	LTBP2	chr14	74970757	-
In-frame	ENST00000261427	ENST00000537894		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000261427	ENST00000313851		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000295963	ENST00000537894		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000295963	ENST00000313851		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
intron-3CDS	ENST00000438068	ENST00000537894		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
intron-3CDS	ENST00000438068	ENST00000313851		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000503368	ENST00000537894		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000503368	ENST00000313851		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000445950	ENST00000537894		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000445950	ENST00000313851		TCGA	LD	LUAD	TCGA-86-A4P7-01A	UBE2K	chr4	39700010	+	FAM216B	chr13	43360899	+
In-frame	ENST00000522447	ENST00000381340		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
5CDS-intron	ENST00000522447	ENST00000545902		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
5CDS-intron	ENST00000522447	ENST00000242737		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
Frame-shit	ENST00000276590	ENST00000381340		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
5CDS-intron	ENST00000276590	ENST00000545902		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
5CDS-intron	ENST00000276590	ENST00000242737		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
Frame-shit	ENST00000517601	ENST00000381340		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
5CDS-intron	ENST00000517601	ENST00000545902		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
5CDS-intron	ENST00000517601	ENST00000242737		TCGA	LD	LUAD	TCGA-91-6828-01A	LACTB2	chr8	71550783	-	ITPR2	chr12	26636831	-
intron-intron	ENST00000588030	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000588030	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000588030	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000589660	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000589660	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000589660	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000588090	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000588090	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000588090	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000591935	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000591935	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000591935	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589710	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589710	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589710	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000588230	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000588230	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000588230	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000413636	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000413636	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000413636	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000586472	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000586472	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000586472	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589686	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589686	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589686	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000444172	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000444172	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000444172	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000587323	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000587323	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000587323	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000320936	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000320936	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000320936	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000587896	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000587896	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000587896	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589235	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589235	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
5UTR-intron	ENST00000589235	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000585630	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000585630	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000585630	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000586773	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000586773	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000586773	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000590188	ENST00000591997		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000590188	ENST00000251289		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-intron	ENST00000590188	ENST00000587001		TCGA	LD	LUAD	TCGA-91-6831-01A	CIRBP	chr19	1269409	+	WDR18	chr19	994019	+
intron-5UTR	ENST00000343572	ENST00000295974		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000343572	ENST00000513140		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000343572	ENST00000508593		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000343572	ENST00000506352		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000343572	ENST00000511572		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-intron	ENST00000343572	ENST00000543538		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-intron	ENST00000343572	ENST00000502841		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-intron	ENST00000343572	ENST00000504305		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000609727	ENST00000295974		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000609727	ENST00000513140		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000609727	ENST00000508593		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000609727	ENST00000506352		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-5UTR	ENST00000609727	ENST00000511572		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-intron	ENST00000609727	ENST00000543538		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-intron	ENST00000609727	ENST00000502841		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
intron-intron	ENST00000609727	ENST00000504305		TCGA	LD	LUAD	TCGA-91-6831-01A	DOC2B	chr17	6011	-	APBB2	chr4	41102767	-
Frame-shit	ENST00000451813	ENST00000396029		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000451813	ENST00000396032		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000451813	ENST00000371602		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000451813	ENST00000349014		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
Frame-shit	ENST00000252015	ENST00000396029		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000252015	ENST00000396032		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000252015	ENST00000371602		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000252015	ENST00000349014		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
intron-3CDS	ENST00000539834	ENST00000396029		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
intron-3CDS	ENST00000539834	ENST00000396032		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
intron-3CDS	ENST00000539834	ENST00000371602		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
intron-3CDS	ENST00000539834	ENST00000349014		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
Frame-shit	ENST00000432634	ENST00000396029		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000432634	ENST00000396032		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000432634	ENST00000371602		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
In-frame	ENST00000432634	ENST00000349014		TCGA	LD	LUAD	TCGA-91-6831-01A	TRPC4AP	chr20	33680417	-	ADNP	chr20	49511049	-
5CDS-5UTR	ENST00000361658	ENST00000584755		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000361658	ENST00000583708		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000361658	ENST00000584398		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000361658	ENST00000578713		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000395544	ENST00000584755		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000395544	ENST00000583708		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000395544	ENST00000584398		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5CDS-5UTR	ENST00000395544	ENST00000578713		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5UTR-5UTR	ENST00000580130	ENST00000584755		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5UTR-5UTR	ENST00000580130	ENST00000583708		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5UTR-5UTR	ENST00000580130	ENST00000584398		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
5UTR-5UTR	ENST00000580130	ENST00000578713		TCGA	LD	LUAD	TCGA-91-6835-01A	ULK2	chr17	19713691	-	UBBP4	chr17	21730693	+
Frame-shit	ENST00000355431	ENST00000354386		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000355431	ENST00000556134		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000355431	ENST00000423743		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000355431	ENST00000261244		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
5CDS-intron	ENST00000355431	ENST00000538571		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000348476	ENST00000354386		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000348476	ENST00000556134		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000348476	ENST00000423743		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000348476	ENST00000261244		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
5CDS-intron	ENST00000348476	ENST00000538571		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000395168	ENST00000354386		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000395168	ENST00000556134		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000395168	ENST00000423743		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000395168	ENST00000261244		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
5CDS-intron	ENST00000395168	ENST00000538571		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000431317	ENST00000354386		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000431317	ENST00000556134		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000431317	ENST00000423743		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000431317	ENST00000261244		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
5CDS-intron	ENST00000431317	ENST00000538571		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000354386		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000556134		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000423743		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000261244		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
intron-intron	ENST00000553355	ENST00000538571		TCGA	LD	LUAD	TCGA-91-6836-01A	ARID4A	chr14	58768408	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000261769	ENST00000254950		TCGA	LD	LUAD	TCGA-91-6836-01A	CDH1	chr16	68772314	+	VPS4A	chr16	69349911	+
5CDS-intron	ENST00000261769	ENST00000564399		TCGA	LD	LUAD	TCGA-91-6836-01A	CDH1	chr16	68772314	+	VPS4A	chr16	69349911	+
Frame-shit	ENST00000422392	ENST00000254950		TCGA	LD	LUAD	TCGA-91-6836-01A	CDH1	chr16	68772314	+	VPS4A	chr16	69349911	+
5CDS-intron	ENST00000422392	ENST00000564399		TCGA	LD	LUAD	TCGA-91-6836-01A	CDH1	chr16	68772314	+	VPS4A	chr16	69349911	+
intron-3CDS	ENST00000562836	ENST00000254950		TCGA	LD	LUAD	TCGA-91-6836-01A	CDH1	chr16	68772314	+	VPS4A	chr16	69349911	+
intron-intron	ENST00000562836	ENST00000564399		TCGA	LD	LUAD	TCGA-91-6836-01A	CDH1	chr16	68772314	+	VPS4A	chr16	69349911	+
5CDS-5UTR	ENST00000376980	ENST00000449193		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000376980	ENST00000444772		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000376980	ENST00000487107		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000376946	ENST00000449193		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000376946	ENST00000444772		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000376946	ENST00000487107		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000483085	ENST00000449193		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000483085	ENST00000444772		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000483085	ENST00000487107		TCGA	LD	LUAD	TCGA-91-6836-01A	DNAJC1	chr10	22209727	-	SKIDA1	chr10	21812800	-
In-frame	ENST00000396472	ENST00000604948		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000396472	ENST00000557565		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000396472	ENST00000250377		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000396472	ENST00000321130		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000396472	ENST00000534898		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000396472	ENST00000603544		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000396472	ENST00000605870		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
5CDS-intron	ENST00000396472	ENST00000603588		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000604948		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000557565		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000250377		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000321130		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000534898		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000603544		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000382406	ENST00000605870		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
5CDS-intron	ENST00000382406	ENST00000603588		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000604948		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000557565		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000250377		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000321130		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000534898		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000603544		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
In-frame	ENST00000280987	ENST00000605870		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
5CDS-intron	ENST00000280987	ENST00000603588		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000604948		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000557565		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000250377		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000321130		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000534898		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000603544		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-3CDS	ENST00000554052	ENST00000605870		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
intron-intron	ENST00000554052	ENST00000603588		TCGA	LD	LUAD	TCGA-91-6836-01A	FAM177A1	chr14	35522657	+	KIAA0391	chr14	35649876	+
Frame-shit	ENST00000269033	ENST00000225388		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000269033	ENST00000579665		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000540801	ENST00000225388		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000540801	ENST00000579665		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000324677	ENST00000225388		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
intron-3CDS	ENST00000324677	ENST00000579665		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000582084	ENST00000225388		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000582084	ENST00000579665		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000590153	ENST00000225388		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000590153	ENST00000579665		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000579954	ENST00000225388		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000579954	ENST00000579665		TCGA	LD	LUAD	TCGA-91-6836-01A	SSH2	chr17	28256956	-	NUFIP2	chr17	27594548	-
5CDS-3UTR	ENST00000293618	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000293618	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000293618	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000429001	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000429001	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000429001	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000398473	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000398473	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000398473	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000518444	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000518444	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000518444	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000347328	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000347328	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000347328	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000522085	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000522085	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000522085	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5UTR-3UTR	ENST00000518561	ENST00000547990		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5UTR-3UTR	ENST00000518561	ENST00000546809		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
5UTR-3UTR	ENST00000518561	ENST00000308796		TCGA	LD	LUAD	TCGA-91-6840-01A	LARP4	chr12	50794811	+	MUCL1	chr12	55250554	+
Frame-shit	ENST00000354300	ENST00000228825		TCGA	LD	LUAD	TCGA-91-6840-01A	PPTC7	chr12	111020614	-	ARPC3	chr12	110878193	-
5CDS-intron	ENST00000354300	ENST00000471641		TCGA	LD	LUAD	TCGA-91-6840-01A	PPTC7	chr12	111020614	-	ARPC3	chr12	110878193	-
5CDS-intron	ENST00000575403	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000575403	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000477478	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000468679	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000461069	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395615	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000261499	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
5CDS-intron	ENST00000395616	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000472876		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000395527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000395529		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000261503		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000395530		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000536879		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000395522		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000395525		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
intron-intron	ENST00000268841	ENST00000584527		TCGA	LD	LUAD	TCGA-91-6847-01A	B9D1	chr17	19247103	-	SPECC1	chr17	19960990	+
In-frame	ENST00000296043	ENST00000264896		TCGA	LD	LUAD	TCGA-91-6847-01A	SHROOM3	chr4	77692051	+	SCARB2	chr4	77117017	-
In-frame	ENST00000296043	ENST00000452464		TCGA	LD	LUAD	TCGA-91-6847-01A	SHROOM3	chr4	77692051	+	SCARB2	chr4	77117017	-
intron-3CDS	ENST00000473602	ENST00000264896		TCGA	LD	LUAD	TCGA-91-6847-01A	SHROOM3	chr4	77692051	+	SCARB2	chr4	77117017	-
intron-3CDS	ENST00000473602	ENST00000452464		TCGA	LD	LUAD	TCGA-91-6847-01A	SHROOM3	chr4	77692051	+	SCARB2	chr4	77117017	-
5UTR-3CDS	ENST00000392505	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000392505	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000359685	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000359685	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000357080	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000357080	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000409045	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000409045	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000190611	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
5UTR-3CDS	ENST00000190611	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
intron-3CDS	ENST00000409631	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
intron-3CDS	ENST00000409631	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
intron-3CDS	ENST00000315022	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
intron-3CDS	ENST00000315022	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
intron-3CDS	ENST00000477097	ENST00000392056		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
intron-3CDS	ENST00000477097	ENST00000344657		TCGA	LD	LUAD	TCGA-91-6848-01A	OSBPL6	chr2	179059401	+	SPHKAP	chr2	228892259	-
Frame-shit	ENST00000351773	ENST00000368648		TCGA	LD	LUAD	TCGA-91-6848-01A	ZNF37A	chr10	38385560	+	EBF3	chr10	131676113	-
Frame-shit	ENST00000351773	ENST00000355311		TCGA	LD	LUAD	TCGA-91-6848-01A	ZNF37A	chr10	38385560	+	EBF3	chr10	131676113	-
Frame-shit	ENST00000361085	ENST00000368648		TCGA	LD	LUAD	TCGA-91-6848-01A	ZNF37A	chr10	38385560	+	EBF3	chr10	131676113	-
Frame-shit	ENST00000361085	ENST00000355311		TCGA	LD	LUAD	TCGA-91-6848-01A	ZNF37A	chr10	38385560	+	EBF3	chr10	131676113	-
3UTR-3CDS	ENST00000479469	ENST00000368648		TCGA	LD	LUAD	TCGA-91-6848-01A	ZNF37A	chr10	38385560	+	EBF3	chr10	131676113	-
3UTR-3CDS	ENST00000479469	ENST00000355311		TCGA	LD	LUAD	TCGA-91-6848-01A	ZNF37A	chr10	38385560	+	EBF3	chr10	131676113	-
3UTR-intron	ENST00000435070	ENST00000410534		TCGA	LD	LUAD	TCGA-91-7771-01A	CPSF6	chr12	69656342	+	SOX2-OT	chr3	180806665	+
3UTR-intron	ENST00000456847	ENST00000410534		TCGA	LD	LUAD	TCGA-91-7771-01A	CPSF6	chr12	69656342	+	SOX2-OT	chr3	180806665	+
3UTR-intron	ENST00000266679	ENST00000410534		TCGA	LD	LUAD	TCGA-91-7771-01A	CPSF6	chr12	69656342	+	SOX2-OT	chr3	180806665	+
intron-intron	ENST00000550987	ENST00000410534		TCGA	LD	LUAD	TCGA-91-7771-01A	CPSF6	chr12	69656342	+	SOX2-OT	chr3	180806665	+
5CDS-intron	ENST00000551516	ENST00000410534		TCGA	LD	LUAD	TCGA-91-7771-01A	CPSF6	chr12	69656342	+	SOX2-OT	chr3	180806665	+
intron-3CDS	ENST00000465878	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000465878	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000465878	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000465878	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000379655	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000379655	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000379655	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000379655	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000445690	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000445690	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000445690	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000445690	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000421376	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000421376	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000421376	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000421376	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000541240	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000541240	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000541240	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000541240	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000540079	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000540079	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000540079	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000540079	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000543930	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000543930	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000543930	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000543930	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000562903	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
5UTR-3CDS	ENST00000562903	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000562903	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
5UTR-intron	ENST00000562903	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000539578	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000539578	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000539578	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000539578	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000566975	ENST00000564448		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-3CDS	ENST00000566975	ENST00000251102		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000566975	ENST00000564654		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
intron-intron	ENST00000566975	ENST00000311183		TCGA	LD	LUAD	TCGA-91-7771-01A	KIFC3	chr16	57813273	-	CNGB1	chr16	57921978	-
5UTR-5UTR	ENST00000374837	ENST00000568305		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
5UTR-5UTR	ENST00000374837	ENST00000374954		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000360668	ENST00000568305		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000360668	ENST00000374954		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000397709	ENST00000568305		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000397709	ENST00000374954		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000476428	ENST00000568305		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-5UTR	ENST00000476428	ENST00000374954		TCGA	LD	LUAD	TCGA-91-7771-01A	MAP1LC3A	chr20	33134720	+	ASIP	chr20	32848171	+
intron-3CDS	ENST00000312156	ENST00000337288		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
intron-5UTR	ENST00000312156	ENST00000462501		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
5UTR-3CDS	ENST00000435572	ENST00000337288		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
5UTR-5UTR	ENST00000435572	ENST00000462501		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
intron-3CDS	ENST00000540264	ENST00000337288		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
intron-5UTR	ENST00000540264	ENST00000462501		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
5UTR-3CDS	ENST00000553070	ENST00000337288		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
5UTR-5UTR	ENST00000553070	ENST00000462501		TCGA	LD	LUAD	TCGA-91-7771-01A	NFE2	chr12	54694585	-	STARD7	chr2	96853039	-
intron-5UTR	ENST00000561311	ENST00000560606		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000561311	ENST00000300069		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000306829	ENST00000560606		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000306829	ENST00000300069		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000559908	ENST00000560606		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000559908	ENST00000300069		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000472902	ENST00000560606		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
intron-5UTR	ENST00000472902	ENST00000300069		TCGA	LD	LUAD	TCGA-91-7771-01A	TLN2	chr15	62682884	+	RBPMS2	chr15	65043837	-
5UTR-3CDS	ENST00000349945	ENST00000541565		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000413764		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000391905		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000537898		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000349945	ENST00000545154		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000545781		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000308852		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000261458		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000349945	ENST00000367010		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-intron	ENST00000349945	ENST00000367009		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000541565		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000413764		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000391905		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000537898		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000432919	ENST00000545154		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000545781		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000308852		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000261458		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000432919	ENST00000367010		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-intron	ENST00000432919	ENST00000367009		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000354436	ENST00000541565		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000354436	ENST00000413764		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000354436	ENST00000391905		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000354436	ENST00000537898		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000354436	ENST00000545154		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000354436	ENST00000545781		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000354436	ENST00000308852		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000354436	ENST00000261458		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000354436	ENST00000367010		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-intron	ENST00000354436	ENST00000367009		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000541565		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000413764		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000391905		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000537898		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
Frame-shit	ENST00000567239	ENST00000545154		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000545781		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000308852		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000261458		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-5UTR	ENST00000567239	ENST00000367010		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5CDS-intron	ENST00000567239	ENST00000367009		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000393742	ENST00000541565		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000393742	ENST00000413764		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000393742	ENST00000391905		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000393742	ENST00000537898		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000393742	ENST00000545154		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000393742	ENST00000545781		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000393742	ENST00000308852		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000393742	ENST00000261458		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000393742	ENST00000367010		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-intron	ENST00000393742	ENST00000367009		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000566899	ENST00000541565		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000566899	ENST00000413764		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000566899	ENST00000391905		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000566899	ENST00000537898		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-3CDS	ENST00000566899	ENST00000545154		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000566899	ENST00000545781		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000566899	ENST00000308852		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000566899	ENST00000261458		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-5UTR	ENST00000566899	ENST00000367010		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
5UTR-intron	ENST00000566899	ENST00000367009		TCGA	LD	LUAD	TCGA-91-8497-01A	NFAT5	chr16	69600277	+	HHAT	chr1	210560812	+
In-frame	ENST00000585509	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000585509	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000585509	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000589297	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000589297	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000589297	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000591455	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000591455	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000591455	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000446868	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000446868	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000446868	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000361101	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000361101	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000361101	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
intron-3CDS	ENST00000589296	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
intron-3CDS	ENST00000589296	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
intron-intron	ENST00000589296	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5UTR-3CDS	ENST00000586175	ENST00000591778		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5UTR-3CDS	ENST00000586175	ENST00000262776		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5UTR-intron	ENST00000586175	ENST00000585407		TCGA	LD	LUAD	TCGA-91-8499-01A	CYTH1	chr17	76688499	-	LGALS3BP	chr17	76968786	-
5CDS-5UTR	ENST00000419617	ENST00000368750		TCGA	LD	LUAD	TCGA-91-A4BC-01A	STK3	chr8	99761504	-	SPRR2E	chr1	153066246	-
5CDS-5UTR	ENST00000419617	ENST00000368751		TCGA	LD	LUAD	TCGA-91-A4BC-01A	STK3	chr8	99761504	-	SPRR2E	chr1	153066246	-
5CDS-5UTR	ENST00000523601	ENST00000368750		TCGA	LD	LUAD	TCGA-91-A4BC-01A	STK3	chr8	99761504	-	SPRR2E	chr1	153066246	-
5CDS-5UTR	ENST00000523601	ENST00000368751		TCGA	LD	LUAD	TCGA-91-A4BC-01A	STK3	chr8	99761504	-	SPRR2E	chr1	153066246	-
intron-5UTR	ENST00000521768	ENST00000368750		TCGA	LD	LUAD	TCGA-91-A4BC-01A	STK3	chr8	99761504	-	SPRR2E	chr1	153066246	-
intron-5UTR	ENST00000521768	ENST00000368751		TCGA	LD	LUAD	TCGA-91-A4BC-01A	STK3	chr8	99761504	-	SPRR2E	chr1	153066246	-
In-frame	ENST00000394303	ENST00000314485		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
In-frame	ENST00000394303	ENST00000368086		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000394303	ENST00000460351		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
In-frame	ENST00000394310	ENST00000314485		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
In-frame	ENST00000394310	ENST00000368086		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000394310	ENST00000460351		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
In-frame	ENST00000344140	ENST00000314485		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
In-frame	ENST00000344140	ENST00000368086		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000344140	ENST00000460351		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000582877	ENST00000314485		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000582877	ENST00000368086		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
intron-5UTR	ENST00000582877	ENST00000460351		TCGA	LD	LUAD	TCGA-93-7348-01A	CACNB1	chr17	37339966	-	IGSF8	chr1	160065036	-
Frame-shit	ENST00000278426	ENST00000307149		TCGA	LD	LUAD	TCGA-93-7348-01A	SLC43A1	chr11	57281431	-	COG7	chr16	23404668	-
5CDS-intron	ENST00000278426	ENST00000569635		TCGA	LD	LUAD	TCGA-93-7348-01A	SLC43A1	chr11	57281431	-	COG7	chr16	23404668	-
Frame-shit	ENST00000528450	ENST00000307149		TCGA	LD	LUAD	TCGA-93-7348-01A	SLC43A1	chr11	57281431	-	COG7	chr16	23404668	-
5CDS-intron	ENST00000528450	ENST00000569635		TCGA	LD	LUAD	TCGA-93-7348-01A	SLC43A1	chr11	57281431	-	COG7	chr16	23404668	-
intron-3CDS	ENST00000533515	ENST00000307149		TCGA	LD	LUAD	TCGA-93-7348-01A	SLC43A1	chr11	57281431	-	COG7	chr16	23404668	-
intron-intron	ENST00000533515	ENST00000569635		TCGA	LD	LUAD	TCGA-93-7348-01A	SLC43A1	chr11	57281431	-	COG7	chr16	23404668	-
5CDS-intron	ENST00000252725	ENST00000453194		TCGA	LD	LUAD	TCGA-93-8067-01A	ARPC1B	chr7	98991742	+	MYH16	chr7	98900688	+
5CDS-intron	ENST00000451682	ENST00000453194		TCGA	LD	LUAD	TCGA-93-8067-01A	ARPC1B	chr7	98991742	+	MYH16	chr7	98900688	+
intron-intron	ENST00000474880	ENST00000453194		TCGA	LD	LUAD	TCGA-93-8067-01A	ARPC1B	chr7	98991742	+	MYH16	chr7	98900688	+
intron-3CDS	ENST00000247020	ENST00000379672		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
intron-3CDS	ENST00000247020	ENST00000340825		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
intron-3CDS	ENST00000247020	ENST00000262444		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
intron-intron	ENST00000247020	ENST00000578087		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
5UTR-3CDS	ENST00000592250	ENST00000379672		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
5UTR-3CDS	ENST00000592250	ENST00000340825		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
5UTR-3CDS	ENST00000592250	ENST00000262444		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
5UTR-intron	ENST00000592250	ENST00000578087		TCGA	LD	LUAD	TCGA-93-8067-01A	SDF2	chr17	26989064	-	ARHGAP44	chr17	12832246	+
5CDS-intron	ENST00000219343	ENST00000575270		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000219343	ENST00000349223		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000219343	ENST00000329524		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000219343	ENST00000346183		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-3UTR	ENST00000219343	ENST00000535127		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000566454	ENST00000575270		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000566454	ENST00000349223		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000566454	ENST00000329524		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-intron	ENST00000566454	ENST00000346183		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-3UTR	ENST00000566454	ENST00000535127		TCGA	LD	LUAD	TCGA-93-8067-01A	SLC7A6	chr16	68309152	+	NFATC3	chr16	68248232	+
5CDS-3UTR	ENST00000447399	ENST00000441253		TCGA	LD	LUAD	TCGA-93-8067-01A	SWAP70	chr11	9715833	+	PYY2	chr17	26554332	+
5CDS-3UTR	ENST00000318950	ENST00000441253		TCGA	LD	LUAD	TCGA-93-8067-01A	SWAP70	chr11	9715833	+	PYY2	chr17	26554332	+
Frame-shit	ENST00000373297	ENST00000348495		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000373297	ENST00000270061		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
5CDS-3UTR	ENST00000373297	ENST00000598159		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
5CDS-intron	ENST00000373297	ENST00000599699		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000314607	ENST00000348495		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000314607	ENST00000270061		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
5CDS-3UTR	ENST00000314607	ENST00000598159		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
5CDS-intron	ENST00000314607	ENST00000599699		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000482131	ENST00000348495		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000482131	ENST00000270061		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
intron-3UTR	ENST00000482131	ENST00000598159		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
intron-intron	ENST00000482131	ENST00000599699		TCGA	LD	LUAD	TCGA-93-8067-01A	ZMYM4	chr1	35855699	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000359314	ENST00000378891		TCGA	LD	LUAD	TCGA-93-A4JO-01A	CD2AP	chr6	47445984	+	DVL1	chr1	1278138	-
Frame-shit	ENST00000359314	ENST00000378888		TCGA	LD	LUAD	TCGA-93-A4JO-01A	CD2AP	chr6	47445984	+	DVL1	chr1	1278138	-
intron-3CDS	ENST00000486693	ENST00000378891		TCGA	LD	LUAD	TCGA-93-A4JO-01A	CD2AP	chr6	47445984	+	DVL1	chr1	1278138	-
intron-3CDS	ENST00000486693	ENST00000378888		TCGA	LD	LUAD	TCGA-93-A4JO-01A	CD2AP	chr6	47445984	+	DVL1	chr1	1278138	-
Frame-shit	ENST00000317568	ENST00000528416		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000317568	ENST00000415073		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
In-frame	ENST00000317568	ENST00000252268		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000317568	ENST00000532264		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000531296	ENST00000528416		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000531296	ENST00000415073		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
intron-3CDS	ENST00000531296	ENST00000252268		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
intron-intron	ENST00000531296	ENST00000532264		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000355991	ENST00000528416		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000355991	ENST00000415073		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
In-frame	ENST00000355991	ENST00000252268		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000355991	ENST00000532264		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000416776	ENST00000528416		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
Frame-shit	ENST00000416776	ENST00000415073		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
In-frame	ENST00000416776	ENST00000252268		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
5CDS-intron	ENST00000416776	ENST00000532264		TCGA	LD	LUAD	TCGA-93-A4JO-01A	FRMD8	chr11	65161570	+	DPF2	chr11	65119154	+
5CDS-5UTR	ENST00000416426	ENST00000573369		TCGA	LD	LUAD	TCGA-93-A4JP-01A	MSI2	chr17	55607085	+	U95743.1	chr16	13824293	-
5CDS-5UTR	ENST00000284073	ENST00000573369		TCGA	LD	LUAD	TCGA-93-A4JP-01A	MSI2	chr17	55607085	+	U95743.1	chr16	13824293	-
5CDS-5UTR	ENST00000322684	ENST00000573369		TCGA	LD	LUAD	TCGA-93-A4JP-01A	MSI2	chr17	55607085	+	U95743.1	chr16	13824293	-
5CDS-5UTR	ENST00000442934	ENST00000573369		TCGA	LD	LUAD	TCGA-93-A4JP-01A	MSI2	chr17	55607085	+	U95743.1	chr16	13824293	-
5CDS-5UTR	ENST00000579180	ENST00000573369		TCGA	LD	LUAD	TCGA-93-A4JP-01A	MSI2	chr17	55607085	+	U95743.1	chr16	13824293	-
3UTR-5UTR	ENST00000579505	ENST00000573369		TCGA	LD	LUAD	TCGA-93-A4JP-01A	MSI2	chr17	55607085	+	U95743.1	chr16	13824293	-
In-frame	ENST00000300737	ENST00000324932		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000300737	ENST00000359171		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000300737	ENST00000355260		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000300737	ENST00000397004		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000300737	ENST00000397007		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
5CDS-intron	ENST00000300737	ENST00000488828		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000527651	ENST00000324932		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000527651	ENST00000359171		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000527651	ENST00000355260		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000527651	ENST00000397004		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000527651	ENST00000397007		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
5CDS-intron	ENST00000527651	ENST00000488828		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000527484	ENST00000324932		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000527484	ENST00000359171		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000527484	ENST00000355260		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000527484	ENST00000397004		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000527484	ENST00000397007		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-intron	ENST00000527484	ENST00000488828		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533977	ENST00000324932		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533977	ENST00000359171		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533977	ENST00000355260		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533977	ENST00000397004		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-3CDS	ENST00000533977	ENST00000397007		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
intron-intron	ENST00000533977	ENST00000488828		TCGA	LD	LUAD	TCGA-93-A4JP-01A	STIM1	chr11	3877639	+	NUP98	chr11	3756554	-
In-frame	ENST00000529689	ENST00000294053		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529689	ENST00000538039		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529689	ENST00000437826		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529689	ENST00000340729		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529689	ENST00000543042		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
5CDS-intron	ENST00000529689	ENST00000445069		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
5CDS-intron	ENST00000529689	ENST00000538021		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
5CDS-intron	ENST00000529689	ENST00000542555		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000294053		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000538039		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000437826		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000340729		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000455220	ENST00000543042		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000455220	ENST00000445069		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000455220	ENST00000538021		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000455220	ENST00000542555		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000294053		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000538039		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000437826		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000340729		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525504	ENST00000543042		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525504	ENST00000445069		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525504	ENST00000538021		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525504	ENST00000542555		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000294053		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000538039		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000437826		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000340729		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000525503	ENST00000543042		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525503	ENST00000445069		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525503	ENST00000538021		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000525503	ENST00000542555		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529611	ENST00000294053		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529611	ENST00000538039		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529611	ENST00000437826		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529611	ENST00000340729		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-3CDS	ENST00000529611	ENST00000543042		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529611	ENST00000445069		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529611	ENST00000538021		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
intron-intron	ENST00000529611	ENST00000542555		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529073	ENST00000294053		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529073	ENST00000538039		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529073	ENST00000437826		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529073	ENST00000340729		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
In-frame	ENST00000529073	ENST00000543042		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
5CDS-intron	ENST00000529073	ENST00000445069		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
5CDS-intron	ENST00000529073	ENST00000538021		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
5CDS-intron	ENST00000529073	ENST00000542555		TCGA	LD	LUAD	TCGA-95-7039-01A	CCDC90B	chr11	82996916	-	CLPB	chr11	72013392	-
Frame-shit	ENST00000415807	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000415807	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000415807	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000415807	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000415807	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000336824	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000336824	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000336824	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000336824	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000336824	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000416957	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000416957	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000416957	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000416957	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000416957	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000392699	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000392699	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000392699	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000392699	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000392699	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000421757	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000421757	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000421757	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000421757	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000421757	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000423424	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000423424	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
Frame-shit	ENST00000423424	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000423424	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5CDS-intron	ENST00000423424	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
intron-3CDS	ENST00000476794	ENST00000392443		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
intron-3CDS	ENST00000476794	ENST00000342695		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
intron-3CDS	ENST00000476794	ENST00000295548		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
intron-intron	ENST00000476794	ENST00000400270		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
intron-intron	ENST00000476794	ENST00000482964		TCGA	LD	LUAD	TCGA-95-7039-01A	FNDC3B	chr3	171851336	+	ATP13A4	chr3	193232660	-
5UTR-3CDS	ENST00000413852	ENST00000316549		TCGA	LD	LUAD	TCGA-95-7039-01A	SEMA3F	chr3	50192580	+	SLC9A9	chr3	143186032	-
5UTR-intron	ENST00000413852	ENST00000498717		TCGA	LD	LUAD	TCGA-95-7039-01A	SEMA3F	chr3	50192580	+	SLC9A9	chr3	143186032	-
5UTR-3CDS	ENST00000002829	ENST00000316549		TCGA	LD	LUAD	TCGA-95-7039-01A	SEMA3F	chr3	50192580	+	SLC9A9	chr3	143186032	-
5UTR-intron	ENST00000002829	ENST00000498717		TCGA	LD	LUAD	TCGA-95-7039-01A	SEMA3F	chr3	50192580	+	SLC9A9	chr3	143186032	-
intron-3CDS	ENST00000434342	ENST00000316549		TCGA	LD	LUAD	TCGA-95-7039-01A	SEMA3F	chr3	50192580	+	SLC9A9	chr3	143186032	-
intron-intron	ENST00000434342	ENST00000498717		TCGA	LD	LUAD	TCGA-95-7039-01A	SEMA3F	chr3	50192580	+	SLC9A9	chr3	143186032	-
In-frame	ENST00000269886	ENST00000252674		TCGA	LD	LUAD	TCGA-95-7039-01A	SH3GL1	chr19	4400321	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000269886	ENST00000585588		TCGA	LD	LUAD	TCGA-95-7039-01A	SH3GL1	chr19	4400321	-	MLLT1	chr19	6270770	-
In-frame	ENST00000598564	ENST00000252674		TCGA	LD	LUAD	TCGA-95-7039-01A	SH3GL1	chr19	4400321	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000598564	ENST00000585588		TCGA	LD	LUAD	TCGA-95-7039-01A	SH3GL1	chr19	4400321	-	MLLT1	chr19	6270770	-
In-frame	ENST00000417295	ENST00000252674		TCGA	LD	LUAD	TCGA-95-7039-01A	SH3GL1	chr19	4400321	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000417295	ENST00000585588		TCGA	LD	LUAD	TCGA-95-7039-01A	SH3GL1	chr19	4400321	-	MLLT1	chr19	6270770	-
5CDS-5UTR	ENST00000306730	ENST00000267731		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000306730	ENST00000569811		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000306730	ENST00000342314		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
5CDS-intron	ENST00000306730	ENST00000438958		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
intron-5UTR	ENST00000558136	ENST00000267731		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000558136	ENST00000569811		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000558136	ENST00000342314		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
intron-intron	ENST00000558136	ENST00000438958		TCGA	LD	LUAD	TCGA-95-7043-01A	AVEN	chr15	34295233	-	GOLGA8B	chr15	34846157	-
Frame-shit	ENST00000283558	ENST00000375608		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000283558	ENST00000442652		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000283558	ENST00000375604		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000283558	ENST00000397030		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000283558	ENST00000535094		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000283558	ENST00000421756		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000283558	ENST00000375601		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000397036		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000434480		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000423482		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000375597		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000397024		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000480321		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000283558	ENST00000397021		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000375608		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000442652		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000375604		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000397030		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000535094		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000421756		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375630	ENST00000375601		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000397036		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000434480		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000423482		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000375597		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000397024		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000480321		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375630	ENST00000397021		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000375608		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000442652		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000375604		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000397030		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000535094		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000421756		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000487903	ENST00000375601		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000397036		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000434480		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000423482		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000375597		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000397024		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000480321		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000487903	ENST00000397021		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000375608		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000442652		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000375604		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000397030		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000535094		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000421756		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000375645	ENST00000375601		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000397036		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000434480		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000423482		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000375597		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000397024		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000480321		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
5CDS-intron	ENST00000375645	ENST00000397021		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000375608		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000442652		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000375604		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000397030		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000535094		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000421756		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-3CDS	ENST00000419448	ENST00000375601		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000397036		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000434480		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000423482		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000375597		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000397024		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000480321		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
intron-intron	ENST00000419448	ENST00000397021		TCGA	LD	LUAD	TCGA-95-7567-01A	ATP11A	chr13	113344769	+	MCF2L	chr13	113669077	+
Frame-shit	ENST00000370192	ENST00000212355		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
Frame-shit	ENST00000370192	ENST00000370399		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
Frame-shit	ENST00000370192	ENST00000525962		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
5CDS-intron	ENST00000370192	ENST00000468996		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000474241	ENST00000212355		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000474241	ENST00000370399		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000474241	ENST00000525962		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-intron	ENST00000474241	ENST00000468996		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000423006	ENST00000212355		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000423006	ENST00000370399		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000423006	ENST00000525962		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-intron	ENST00000423006	ENST00000468996		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000306031	ENST00000212355		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000306031	ENST00000370399		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000306031	ENST00000525962		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-intron	ENST00000306031	ENST00000468996		TCGA	LD	LUAD	TCGA-95-8494-01A	DPYD	chr1	98144651	-	TGFBR3	chr1	92149414	-
intron-3CDS	ENST00000341217	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
5UTR-3CDS	ENST00000581407	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
5UTR-3CDS	ENST00000582266	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
intron-3CDS	ENST00000452648	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
intron-3CDS	ENST00000582059	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
intron-3CDS	ENST00000583953	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
5UTR-3CDS	ENST00000577682	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
5UTR-3CDS	ENST00000583522	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
5UTR-3CDS	ENST00000581381	ENST00000261195		TCGA	LD	LUAD	TCGA-95-8494-01A	FAM222B	chr17	27169700	-	GYS2	chr12	21721943	-
Frame-shit	ENST00000534064	ENST00000308488		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000534064	ENST00000360355		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000534064	ENST00000480887		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
5CDS-intron	ENST00000534064	ENST00000530604		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-3CDS	ENST00000535943	ENST00000308488		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-3CDS	ENST00000535943	ENST00000360355		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-3CDS	ENST00000535943	ENST00000480887		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-intron	ENST00000535943	ENST00000530604		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-3CDS	ENST00000525931	ENST00000308488		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-3CDS	ENST00000525931	ENST00000360355		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-3CDS	ENST00000525931	ENST00000480887		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
intron-intron	ENST00000525931	ENST00000530604		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000529807	ENST00000308488		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000529807	ENST00000360355		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000529807	ENST00000480887		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
5CDS-intron	ENST00000529807	ENST00000530604		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000527522	ENST00000308488		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000527522	ENST00000360355		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
Frame-shit	ENST00000527522	ENST00000480887		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
5CDS-intron	ENST00000527522	ENST00000530604		TCGA	LD	LUAD	TCGA-95-8494-01A	INTS4	chr11	77705636	-	RSF1	chr11	77389198	-
3UTR-3CDS	ENST00000592666	ENST00000159111		TCGA	LD	LUAD	TCGA-95-8494-01A	UHRF1	chr19	4932968	+	KDM4B	chr19	5071021	+
3UTR-3CDS	ENST00000592666	ENST00000381759		TCGA	LD	LUAD	TCGA-95-8494-01A	UHRF1	chr19	4932968	+	KDM4B	chr19	5071021	+
3UTR-3CDS	ENST00000592666	ENST00000536461		TCGA	LD	LUAD	TCGA-95-8494-01A	UHRF1	chr19	4932968	+	KDM4B	chr19	5071021	+
3UTR-3UTR	ENST00000592666	ENST00000592175		TCGA	LD	LUAD	TCGA-95-8494-01A	UHRF1	chr19	4932968	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000355235	ENST00000518659		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
Frame-shit	ENST00000355235	ENST00000545108		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-3UTR	ENST00000355235	ENST00000520393		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-3UTR	ENST00000355235	ENST00000519204		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-intron	ENST00000355235	ENST00000520394		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-intron	ENST00000355235	ENST00000403607		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
Frame-shit	ENST00000356834	ENST00000518659		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
Frame-shit	ENST00000356834	ENST00000545108		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-3UTR	ENST00000356834	ENST00000520393		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-3UTR	ENST00000356834	ENST00000519204		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-intron	ENST00000356834	ENST00000520394		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
5CDS-intron	ENST00000356834	ENST00000403607		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3CDS	ENST00000518085	ENST00000518659		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3CDS	ENST00000518085	ENST00000545108		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3UTR	ENST00000518085	ENST00000520393		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3UTR	ENST00000518085	ENST00000519204		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-intron	ENST00000518085	ENST00000520394		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-intron	ENST00000518085	ENST00000403607		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3CDS	ENST00000519746	ENST00000518659		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3CDS	ENST00000519746	ENST00000545108		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3UTR	ENST00000519746	ENST00000520393		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3UTR	ENST00000519746	ENST00000519204		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-intron	ENST00000519746	ENST00000520394		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-intron	ENST00000519746	ENST00000403607		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3CDS	ENST00000444477	ENST00000518659		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3CDS	ENST00000444477	ENST00000545108		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3UTR	ENST00000444477	ENST00000520393		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-3UTR	ENST00000444477	ENST00000519204		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-intron	ENST00000444477	ENST00000520394		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
intron-intron	ENST00000444477	ENST00000403607		TCGA	LD	LUAD	TCGA-95-A4VK-01A	TBC1D9B	chr5	179334704	-	TENM2	chr5	167302991	+
In-frame	ENST00000361658	ENST00000543245		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
In-frame	ENST00000361658	ENST00000356839		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
In-frame	ENST00000361658	ENST00000350303		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5CDS-3UTR	ENST00000361658	ENST00000581562		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
Frame-shit	ENST00000395544	ENST00000543245		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
Frame-shit	ENST00000395544	ENST00000356839		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
Frame-shit	ENST00000395544	ENST00000350303		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5CDS-3UTR	ENST00000395544	ENST00000581562		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5UTR-3CDS	ENST00000580130	ENST00000543245		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5UTR-3CDS	ENST00000580130	ENST00000356839		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5UTR-3CDS	ENST00000580130	ENST00000350303		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5UTR-3UTR	ENST00000580130	ENST00000581562		TCGA	LD	LUAD	TCGA-95-A4VK-01A	ULK2	chr17	19741814	-	ACADVL	chr17	7123441	+
5CDS-5UTR	ENST00000371917	ENST00000370651		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000371917	ENST00000370650		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
5CDS-5UTR	ENST00000371917	ENST00000578299		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
5CDS-3UTR	ENST00000371917	ENST00000473334		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
intron-5UTR	ENST00000493140	ENST00000370651		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
intron-5UTR	ENST00000493140	ENST00000370650		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
intron-5UTR	ENST00000493140	ENST00000578299		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
intron-3UTR	ENST00000493140	ENST00000473334		TCGA	LD	LUAD	TCGA-95-A4VP-01A	ARFGEF2	chr20	47604925	+	PTP4A1	chr6	64286341	+
In-frame	ENST00000544440	ENST00000381944		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
In-frame	ENST00000544440	ENST00000217254		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
5CDS-intron	ENST00000544440	ENST00000473664		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
In-frame	ENST00000407578	ENST00000381944		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
In-frame	ENST00000407578	ENST00000217254		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
5CDS-intron	ENST00000407578	ENST00000473664		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
Frame-shit	ENST00000357337	ENST00000381944		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
Frame-shit	ENST00000357337	ENST00000217254		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
5CDS-intron	ENST00000357337	ENST00000473664		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
5UTR-3CDS	ENST00000360084	ENST00000381944		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
5UTR-3CDS	ENST00000360084	ENST00000217254		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
5UTR-intron	ENST00000360084	ENST00000473664		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
intron-3CDS	ENST00000482517	ENST00000381944		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
intron-3CDS	ENST00000482517	ENST00000217254		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
intron-intron	ENST00000482517	ENST00000473664		TCGA	LD	LUAD	TCGA-97-7546-01A	MYCBP2	chr13	77763086	-	SLC52A3	chr20	749126	-
Frame-shit	ENST00000253354	ENST00000375483		TCGA	LD	LUAD	TCGA-97-7547-01A	BPIFB1	chr20	31879794	+	BPIFB4	chr20	31699220	+
5CDS-3UTR	ENST00000253354	ENST00000494121		TCGA	LD	LUAD	TCGA-97-7547-01A	BPIFB1	chr20	31879794	+	BPIFB4	chr20	31699220	+
intron-3CDS	ENST00000464032	ENST00000375483		TCGA	LD	LUAD	TCGA-97-7547-01A	BPIFB1	chr20	31879794	+	BPIFB4	chr20	31699220	+
intron-3UTR	ENST00000464032	ENST00000494121		TCGA	LD	LUAD	TCGA-97-7547-01A	BPIFB1	chr20	31879794	+	BPIFB4	chr20	31699220	+
Frame-shit	ENST00000438167	ENST00000409790		TCGA	LD	LUAD	TCGA-97-7547-01A	PLA2G10	chr16	14787990	-	CLEC16A	chr16	11114050	+
Frame-shit	ENST00000438167	ENST00000409552		TCGA	LD	LUAD	TCGA-97-7547-01A	PLA2G10	chr16	14787990	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000438167	ENST00000465491		TCGA	LD	LUAD	TCGA-97-7547-01A	PLA2G10	chr16	14787990	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000438167	ENST00000381822		TCGA	LD	LUAD	TCGA-97-7547-01A	PLA2G10	chr16	14787990	-	CLEC16A	chr16	11114050	+
intron-5UTR	ENST00000561069	ENST00000330828		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
intron-intron	ENST00000561069	ENST00000527783		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
5UTR-5UTR	ENST00000558402	ENST00000330828		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
5UTR-intron	ENST00000558402	ENST00000527783		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
5UTR-5UTR	ENST00000558330	ENST00000330828		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
5UTR-intron	ENST00000558330	ENST00000527783		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
intron-5UTR	ENST00000411764	ENST00000330828		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
intron-intron	ENST00000411764	ENST00000527783		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
intron-5UTR	ENST00000558259	ENST00000330828		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
intron-intron	ENST00000558259	ENST00000527783		TCGA	LD	LUAD	TCGA-97-7554-01A	APBA2	chr15	29131424	+	C12orf60	chr12	14975846	+
In-frame	ENST00000439730	ENST00000261708		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
5CDS-intron	ENST00000439730	ENST00000490218		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
In-frame	ENST00000576910	ENST00000261708		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
5CDS-intron	ENST00000576910	ENST00000490218		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
In-frame	ENST00000393456	ENST00000261708		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
5CDS-intron	ENST00000393456	ENST00000490218		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
In-frame	ENST00000415811	ENST00000261708		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
5CDS-intron	ENST00000415811	ENST00000490218		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
In-frame	ENST00000575949	ENST00000261708		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
5CDS-intron	ENST00000575949	ENST00000490218		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
In-frame	ENST00000225567	ENST00000261708		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
5CDS-intron	ENST00000225567	ENST00000490218		TCGA	LD	LUAD	TCGA-97-7554-01A	GOSR2	chr17	45000587	+	UTP6	chr17	30207773	-
Frame-shit	ENST00000253719	ENST00000225964		TCGA	LD	LUAD	TCGA-97-7554-01A	NAPSA	chr19	50865226	-	COL1A1	chr17	48270054	-
5CDS-intron	ENST00000393193	ENST00000394465		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000393193	ENST00000378342		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000393193	ENST00000394463		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000393193	ENST00000339270		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000393193	ENST00000482104		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000376392	ENST00000394465		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000376392	ENST00000378342		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000376392	ENST00000394463		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000376392	ENST00000339270		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000376392	ENST00000482104		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000555572	ENST00000394465		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000555572	ENST00000378342		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000555572	ENST00000394463		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000555572	ENST00000339270		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-intron	ENST00000555572	ENST00000482104		TCGA	LD	LUAD	TCGA-97-7554-01A	NME2	chr17	49245704	+	CCL4L2	chr17	34539178	+
5CDS-5UTR	ENST00000270586	ENST00000323997		TCGA	LD	LUAD	TCGA-97-8171-01A	PSMB6	chr17	4699591	+	ENO3	chr17	4855123	+
5CDS-5UTR	ENST00000270586	ENST00000519584		TCGA	LD	LUAD	TCGA-97-8171-01A	PSMB6	chr17	4699591	+	ENO3	chr17	4855123	+
5CDS-5UTR	ENST00000270586	ENST00000518175		TCGA	LD	LUAD	TCGA-97-8171-01A	PSMB6	chr17	4699591	+	ENO3	chr17	4855123	+
Frame-shit	ENST00000346672	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
In-frame	ENST00000346672	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000346672	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000346672	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000346672	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000346672	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000360962	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
In-frame	ENST00000360962	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000360962	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000360962	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000360962	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000360962	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000527634	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
In-frame	ENST00000527634	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000527634	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000527634	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000527634	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000527634	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000540737	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
In-frame	ENST00000540737	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000540737	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000540737	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000540737	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000540737	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000532565	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
In-frame	ENST00000532565	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000532565	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000532565	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000532565	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000532565	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000525449	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
In-frame	ENST00000525449	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
Frame-shit	ENST00000525449	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000525449	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000525449	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-intron	ENST00000525449	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
intron-3CDS	ENST00000527368	ENST00000350997		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
intron-3CDS	ENST00000527368	ENST00000536991		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
intron-3CDS	ENST00000527368	ENST00000433932		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
intron-intron	ENST00000527368	ENST00000460649		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
intron-intron	ENST00000527368	ENST00000542506		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
intron-intron	ENST00000527368	ENST00000541683		TCGA	LD	LUAD	TCGA-97-8174-01A	C11orf80	chr11	66595835	+	FADS1	chr11	61572233	-
5CDS-5UTR	ENST00000011653	ENST00000373025		TCGA	LD	LUAD	TCGA-97-8174-01A	CD4	chr12	6925313	+	PGC	chr6	41715122	-
5CDS-5UTR	ENST00000011653	ENST00000425343		TCGA	LD	LUAD	TCGA-97-8174-01A	CD4	chr12	6925313	+	PGC	chr6	41715122	-
3UTR-5UTR	ENST00000541982	ENST00000373025		TCGA	LD	LUAD	TCGA-97-8174-01A	CD4	chr12	6925313	+	PGC	chr6	41715122	-
3UTR-5UTR	ENST00000541982	ENST00000425343		TCGA	LD	LUAD	TCGA-97-8174-01A	CD4	chr12	6925313	+	PGC	chr6	41715122	-
3UTR-5UTR	ENST00000538827	ENST00000373025		TCGA	LD	LUAD	TCGA-97-8174-01A	CD4	chr12	6925313	+	PGC	chr6	41715122	-
3UTR-5UTR	ENST00000538827	ENST00000425343		TCGA	LD	LUAD	TCGA-97-8174-01A	CD4	chr12	6925313	+	PGC	chr6	41715122	-
Frame-shit	ENST00000534358	ENST00000368682		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000354650		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000229471		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000368667		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000368678		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000229470		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000356013		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000534358	ENST00000538466		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
5CDS-5UTR	ENST00000534358	ENST00000476769		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000368682		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000354650		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000229471		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000368667		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000368678		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000229470		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000356013		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000389506	ENST00000538466		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
5CDS-5UTR	ENST00000389506	ENST00000476769		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000368682		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000354650		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000229471		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000368667		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000368678		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000229470		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000356013		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
Frame-shit	ENST00000354520	ENST00000538466		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
5CDS-5UTR	ENST00000354520	ENST00000476769		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000368682		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000354650		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000229471		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000368667		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000368678		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000229470		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000356013		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000420751	ENST00000538466		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-5UTR	ENST00000420751	ENST00000476769		TCGA	LD	LUAD	TCGA-97-8174-01A	KMT2A	chr11	118382740	+	FYN	chr6	112025305	-
intron-3CDS	ENST00000373025	ENST00000519937		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000373025	ENST00000342375		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000373025	ENST00000393822		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000373025	ENST00000409383		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000425343	ENST00000519937		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000425343	ENST00000342375		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000425343	ENST00000393822		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
intron-3CDS	ENST00000425343	ENST00000409383		TCGA	LD	LUAD	TCGA-97-8174-01A	PGC	chr6	41704702	-	SFTPB	chr2	85893829	-
5CDS-intron	ENST00000393795	ENST00000472876		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000395527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000395529		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000261503		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000395530		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000536879		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000395522		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000395525		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000393795	ENST00000584527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000472876		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000395527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000395529		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000261503		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000395530		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000536879		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000395522		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000395525		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000253789	ENST00000584527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000472876		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000395527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000395529		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000261503		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000395530		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000536879		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000395522		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000395525		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000587209	ENST00000584527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000472876		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000395527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000395529		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000261503		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000395530		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000536879		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000395522		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000395525		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000590760	ENST00000584527		TCGA	LD	LUAD	TCGA-97-8175-01A	PSMC3IP	chr17	40725329	-	SPECC1	chr17	20107646	+
In-frame	ENST00000418930	ENST00000285381		TCGA	LD	LUAD	TCGA-97-8176-01A	E2F5	chr8	86121644	+	CA3	chr8	86351941	+
In-frame	ENST00000256117	ENST00000285381		TCGA	LD	LUAD	TCGA-97-8176-01A	E2F5	chr8	86121644	+	CA3	chr8	86351941	+
In-frame	ENST00000416274	ENST00000285381		TCGA	LD	LUAD	TCGA-97-8176-01A	E2F5	chr8	86121644	+	CA3	chr8	86351941	+
3UTR-3CDS	ENST00000519128	ENST00000285381		TCGA	LD	LUAD	TCGA-97-8176-01A	E2F5	chr8	86121644	+	CA3	chr8	86351941	+
In-frame	ENST00000517476	ENST00000285381		TCGA	LD	LUAD	TCGA-97-8176-01A	E2F5	chr8	86121644	+	CA3	chr8	86351941	+
In-frame	ENST00000521429	ENST00000285381		TCGA	LD	LUAD	TCGA-97-8176-01A	E2F5	chr8	86121644	+	CA3	chr8	86351941	+
In-frame	ENST00000373017	ENST00000300417		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373017	ENST00000373324		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373017	ENST00000323301		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373017	ENST00000373322		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
5CDS-intron	ENST00000373017	ENST00000483302		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
3UTR-3CDS	ENST00000470902	ENST00000300417		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
3UTR-3CDS	ENST00000470902	ENST00000373324		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
3UTR-3CDS	ENST00000470902	ENST00000323301		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
3UTR-3CDS	ENST00000470902	ENST00000373322		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
3UTR-intron	ENST00000470902	ENST00000483302		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000540948	ENST00000300417		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000540948	ENST00000373324		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000540948	ENST00000323301		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000540948	ENST00000373322		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
5CDS-intron	ENST00000540948	ENST00000483302		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000277480	ENST00000300417		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000277480	ENST00000373324		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000277480	ENST00000323301		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000277480	ENST00000373322		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
5CDS-intron	ENST00000277480	ENST00000483302		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373013	ENST00000300417		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373013	ENST00000373324		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373013	ENST00000323301		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000373013	ENST00000373322		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
5CDS-intron	ENST00000373013	ENST00000483302		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000372998	ENST00000300417		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000372998	ENST00000373324		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000372998	ENST00000323301		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
In-frame	ENST00000372998	ENST00000373322		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
5CDS-intron	ENST00000372998	ENST00000483302		TCGA	LD	LUAD	TCGA-97-8176-01A	LCN2	chr9	130911942	+	LRSAM1	chr9	130223452	+
intron-3CDS	ENST00000350026	ENST00000400788		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-intron	ENST00000350026	ENST00000367144		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-3CDS	ENST00000346085	ENST00000400788		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-intron	ENST00000346085	ENST00000367144		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-3CDS	ENST00000367148	ENST00000400788		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-intron	ENST00000367148	ENST00000367144		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-3CDS	ENST00000275248	ENST00000400788		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-intron	ENST00000275248	ENST00000367144		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-3CDS	ENST00000478761	ENST00000400788		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-intron	ENST00000478761	ENST00000367144		TCGA	LD	LUAD	TCGA-97-8177-01A	ARID1B	chr6	157358010	+	TMEM242	chr6	157714031	-
intron-3CDS	ENST00000400921	ENST00000372726		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000400921	ENST00000537995		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000400921	ENST00000494455		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000400920	ENST00000372726		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000400920	ENST00000537995		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000400920	ENST00000494455		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000479263	ENST00000372726		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000479263	ENST00000537995		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000479263	ENST00000494455		TCGA	LD	LUAD	TCGA-97-8177-01A	PRKCZ	chr1	1991030	+	TP53TG5	chr20	44006253	-
Frame-shit	ENST00000262189	ENST00000297875		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
Frame-shit	ENST00000262189	ENST00000357972		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
Frame-shit	ENST00000262189	ENST00000456733		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
Frame-shit	ENST00000355193	ENST00000297875		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
Frame-shit	ENST00000355193	ENST00000357972		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
Frame-shit	ENST00000355193	ENST00000456733		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
intron-3CDS	ENST00000485655	ENST00000297875		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
intron-3CDS	ENST00000485655	ENST00000357972		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
intron-3CDS	ENST00000485655	ENST00000456733		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
intron-3CDS	ENST00000485241	ENST00000297875		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
intron-3CDS	ENST00000485241	ENST00000357972		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
intron-3CDS	ENST00000485241	ENST00000456733		TCGA	LD	LUAD	TCGA-97-8179-01A	KMT2C	chr7	152132711	-	SYTL5	chrX	37913466	+
5CDS-intron	ENST00000239690	ENST00000423230		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000239690	ENST00000398656		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000239690	ENST00000534366		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000239690	ENST00000528919		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000239690	ENST00000326134		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000239690	ENST00000527071		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000239690	ENST00000544576		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000423230		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000398656		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000534366		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000528919		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000326134		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000527071		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-intron	ENST00000427660	ENST00000544576		TCGA	LD	LUAD	TCGA-97-8547-01A	NUDCD1	chr8	110283234	-	MROH1	chr8	145303780	+
5CDS-5UTR	ENST00000566228	ENST00000262467		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000566228	ENST00000345221		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000566228	ENST00000269280		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000566228	ENST00000572272		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000566228	ENST00000354411		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000566228	ENST00000577119		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000566228	ENST00000571307		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000323433	ENST00000262467		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000323433	ENST00000345221		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000323433	ENST00000269280		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000323433	ENST00000572272		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000323433	ENST00000354411		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000323433	ENST00000577119		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000323433	ENST00000571307		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000306030	ENST00000262467		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000306030	ENST00000345221		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000306030	ENST00000269280		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000306030	ENST00000572272		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000306030	ENST00000354411		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000306030	ENST00000577119		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000306030	ENST00000571307		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-5UTR	ENST00000568359	ENST00000262467		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-5UTR	ENST00000568359	ENST00000345221		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-intron	ENST00000568359	ENST00000269280		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-intron	ENST00000568359	ENST00000572272		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-intron	ENST00000568359	ENST00000354411		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-intron	ENST00000568359	ENST00000577119		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
intron-5UTR	ENST00000568359	ENST00000571307		TCGA	LD	LUAD	TCGA-97-8552-01A	SNX29	chr16	12497386	+	NLRP1	chr17	5487820	-
Frame-shit	ENST00000261716	ENST00000353533		TCGA	LD	LUAD	TCGA-97-A4LX-01A	TAOK1	chr17	27818883	+	MAP2K4	chr17	12043156	+
Frame-shit	ENST00000261716	ENST00000415385		TCGA	LD	LUAD	TCGA-97-A4LX-01A	TAOK1	chr17	27818883	+	MAP2K4	chr17	12043156	+
5CDS-intron	ENST00000261716	ENST00000581941		TCGA	LD	LUAD	TCGA-97-A4LX-01A	TAOK1	chr17	27818883	+	MAP2K4	chr17	12043156	+
Frame-shit	ENST00000536202	ENST00000353533		TCGA	LD	LUAD	TCGA-97-A4LX-01A	TAOK1	chr17	27818883	+	MAP2K4	chr17	12043156	+
Frame-shit	ENST00000536202	ENST00000415385		TCGA	LD	LUAD	TCGA-97-A4LX-01A	TAOK1	chr17	27818883	+	MAP2K4	chr17	12043156	+
5CDS-intron	ENST00000536202	ENST00000581941		TCGA	LD	LUAD	TCGA-97-A4LX-01A	TAOK1	chr17	27818883	+	MAP2K4	chr17	12043156	+
5UTR-3CDS	ENST00000291572	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000291572	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000291572	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000398061	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000398061	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3UTR	ENST00000398061	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000327505	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000327505	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3UTR	ENST00000327505	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000398063	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000398063	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3UTR	ENST00000398063	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000398058	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000398058	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3UTR	ENST00000398058	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000546158	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000546158	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3UTR	ENST00000546158	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000479117	ENST00000349048		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000479117	ENST00000403390		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3UTR	ENST00000479117	ENST00000496824		TCGA	LD	LUAD	TCGA-97-A4M1-01A	AGPAT3	chr21	45285226	+	PFKL	chr21	45726564	+
intron-3CDS	ENST00000541502	ENST00000244047		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
intron-3CDS	ENST00000541502	ENST00000350849		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
intron-3CDS	ENST00000541502	ENST00000348616		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
intron-3UTR	ENST00000541502	ENST00000497614		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
intron-3UTR	ENST00000541502	ENST00000244049		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000409404	ENST00000244047		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000409404	ENST00000350849		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000409404	ENST00000348616		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000409404	ENST00000497614		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000409404	ENST00000244049		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000298047	ENST00000244047		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000298047	ENST00000350849		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000298047	ENST00000348616		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000298047	ENST00000497614		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000298047	ENST00000244049		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000525166	ENST00000244047		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000525166	ENST00000350849		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000525166	ENST00000348616		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000525166	ENST00000497614		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000525166	ENST00000244049		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000533797	ENST00000244047		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000533797	ENST00000350849		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
Frame-shit	ENST00000533797	ENST00000348616		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000533797	ENST00000497614		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
5CDS-3UTR	ENST00000533797	ENST00000244049		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
3UTR-3CDS	ENST00000489716	ENST00000244047		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
3UTR-3CDS	ENST00000489716	ENST00000350849		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
3UTR-3CDS	ENST00000489716	ENST00000348616		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
3UTR-3UTR	ENST00000489716	ENST00000497614		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
3UTR-3UTR	ENST00000489716	ENST00000244049		TCGA	LD	LUAD	TCGA-97-A4M3-01A	FAT3	chr11	92620279	+	CDH26	chr20	58581768	+
intron-3CDS	ENST00000420913	ENST00000430487		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
intron-3CDS	ENST00000420913	ENST00000403751		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
intron-intron	ENST00000420913	ENST00000468326		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000294954	ENST00000430487		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000294954	ENST00000403751		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
5CDS-intron	ENST00000294954	ENST00000468326		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000344775	ENST00000430487		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000344775	ENST00000403751		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
5CDS-intron	ENST00000344775	ENST00000468326		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
intron-3CDS	ENST00000405626	ENST00000430487		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
intron-3CDS	ENST00000405626	ENST00000403751		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
intron-intron	ENST00000405626	ENST00000468326		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000403273	ENST00000430487		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000403273	ENST00000403751		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
5CDS-intron	ENST00000403273	ENST00000468326		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000401907	ENST00000430487		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
Frame-shit	ENST00000401907	ENST00000403751		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
5CDS-intron	ENST00000401907	ENST00000468326		TCGA	LD	LUAD	TCGA-97-A4M3-01A	LHCGR	chr2	48921363	-	GTF2A1L	chr2	48906474	+
intron-3CDS	ENST00000234195	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-intron	ENST00000234195	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-3CDS	ENST00000469469	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-intron	ENST00000469469	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
In-frame	ENST00000354545	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
5CDS-intron	ENST00000354545	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
In-frame	ENST00000406384	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
5CDS-intron	ENST00000406384	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-3CDS	ENST00000407257	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-intron	ENST00000407257	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-3CDS	ENST00000417700	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-intron	ENST00000417700	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-3CDS	ENST00000402091	ENST00000331457		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
intron-intron	ENST00000402091	ENST00000433341		TCGA	LD	LUAD	TCGA-97-A4M3-01A	RMDN2	chr2	38156872	+	DRG1	chr22	31822601	+
In-frame	ENST00000522695	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
In-frame	ENST00000522695	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
In-frame	ENST00000522695	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
5CDS-intron	ENST00000522695	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000524300	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000524300	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000524300	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
5CDS-intron	ENST00000524300	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000523558	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000523558	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000523558	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
5CDS-intron	ENST00000523558	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000521210	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000521210	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000521210	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
5CDS-intron	ENST00000521210	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000355780	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000355780	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000355780	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000355780	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000519961	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000519961	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000519961	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000519961	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521727	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521727	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521727	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000521727	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521451	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521451	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521451	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000521451	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000522509	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000522509	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000522509	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000522509	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000517542	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000517542	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000517542	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000517542	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000524104	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000524104	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000524104	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000524104	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000522962	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000522962	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000522962	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000522962	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521419	ENST00000401827		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521419	ENST00000396642		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-3CDS	ENST00000521419	ENST00000379419		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
intron-intron	ENST00000521419	ENST00000518667		TCGA	LD	LUAD	TCGA-97-A4M3-01A	STAU2	chr8	74464247	-	PDE7A	chr8	66695078	-
Frame-shit	ENST00000339464	ENST00000351989		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000339464	ENST00000383024		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000339464	ENST00000407755		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000409496	ENST00000351989		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000409496	ENST00000383024		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000409496	ENST00000407755		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410089	ENST00000351989		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410089	ENST00000383024		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410089	ENST00000407755		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410058	ENST00000351989		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410058	ENST00000383024		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
Frame-shit	ENST00000410058	ENST00000407755		TCGA	LD	LUAD	TCGA-97-A4M3-01A	WNT7B	chr22	46345804	-	DGCR8	chr22	20093700	+
5CDS-intron	ENST00000155840	ENST00000444303		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
5CDS-intron	ENST00000155840	ENST00000396554		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
5CDS-intron	ENST00000155840	ENST00000530864		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
5CDS-intron	ENST00000335475	ENST00000444303		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
5CDS-intron	ENST00000335475	ENST00000396554		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
5CDS-intron	ENST00000335475	ENST00000530864		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
intron-intron	ENST00000526095	ENST00000444303		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
intron-intron	ENST00000526095	ENST00000396554		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
intron-intron	ENST00000526095	ENST00000530864		TCGA	LD	LUAD	TCGA-97-A4M5-01A	KCNQ1	chr11	2683311	+	AMPD3	chr11	10378822	+
Frame-shit	ENST00000278715	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
5UTR-3CDS	ENST00000537841	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
5UTR-3CDS	ENST00000542729	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
5UTR-3CDS	ENST00000442944	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
Frame-shit	ENST00000544387	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
Frame-shit	ENST00000543090	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
intron-3CDS	ENST00000392841	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
intron-3CDS	ENST00000534956	ENST00000317011		TCGA	LD	LUAD	TCGA-99-7458-01A	HMBS	chr11	118955776	+	FOXR1	chr11	118849492	+
In-frame	ENST00000345136	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000345136	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000345136	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000345136	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000357649	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000357649	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000357649	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000357649	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354589	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354589	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354589	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354589	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000398774	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000398774	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000398774	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000398774	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000322810	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000322810	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000322810	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000322810	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354958	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354958	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354958	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000354958	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000356346	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000356346	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000356346	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000356346	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
Frame-shit	ENST00000436759	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
Frame-shit	ENST00000436759	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
Frame-shit	ENST00000436759	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
Frame-shit	ENST00000436759	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000527096	ENST00000328703		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000527096	ENST00000457918		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000527096	ENST00000483970		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
In-frame	ENST00000527096	ENST00000532105		TCGA	LD	LUAD	TCGA-99-8025-01A	PLEC	chr8	145011333	-	HAX1	chr1	154247426	+
5CDS-3UTR	ENST00000519937	ENST00000459775		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000519937	ENST00000450066		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000519937	ENST00000409025		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000519937	ENST00000409470		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000519937	ENST00000323701		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000519937	ENST00000409766		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000342375	ENST00000459775		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000342375	ENST00000450066		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000342375	ENST00000409025		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000342375	ENST00000409470		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000342375	ENST00000323701		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000342375	ENST00000409766		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000393822	ENST00000459775		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000393822	ENST00000450066		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000393822	ENST00000409025		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000393822	ENST00000409470		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000393822	ENST00000323701		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000393822	ENST00000409766		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000409383	ENST00000459775		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000409383	ENST00000450066		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000409383	ENST00000409025		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000409383	ENST00000409470		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000409383	ENST00000323701		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5CDS-3UTR	ENST00000409383	ENST00000409766		TCGA	LD	LUAD	TCGA-99-8025-01A	SFTPB	chr2	85890469	-	USP39	chr2	85868099	+
5UTR-3CDS	ENST00000457734	ENST00000457573		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
5UTR-3CDS	ENST00000457734	ENST00000341333		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
5UTR-3CDS	ENST00000457734	ENST00000415259		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
5UTR-3CDS	ENST00000457734	ENST00000395057		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
5UTR-3CDS	ENST00000457734	ENST00000416589		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
5UTR-3UTR	ENST00000457734	ENST00000463857		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000337777	ENST00000457573		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000337777	ENST00000341333		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000337777	ENST00000415259		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000337777	ENST00000395057		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000337777	ENST00000416589		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3UTR	ENST00000337777	ENST00000463857		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000497002	ENST00000457573		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000497002	ENST00000341333		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000497002	ENST00000415259		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000497002	ENST00000395057		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000497002	ENST00000416589		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3UTR	ENST00000497002	ENST00000463857		TCGA	LD	LUAD	TCGA-99-8032-01A	PLS1	chr3	142315351	+	TEX264	chr3	51737740	+
intron-3CDS	ENST00000354700	ENST00000378733		TCGA	LD	LUAD	TCGA-99-8033-01A	ACAP3	chr1	1227799	-	TMEM240	chr1	1475167	-
intron-3CDS	ENST00000354700	ENST00000425828		TCGA	LD	LUAD	TCGA-99-8033-01A	ACAP3	chr1	1227799	-	TMEM240	chr1	1475167	-
intron-3CDS	ENST00000353662	ENST00000378733		TCGA	LD	LUAD	TCGA-99-8033-01A	ACAP3	chr1	1227799	-	TMEM240	chr1	1475167	-
intron-3CDS	ENST00000353662	ENST00000425828		TCGA	LD	LUAD	TCGA-99-8033-01A	ACAP3	chr1	1227799	-	TMEM240	chr1	1475167	-
intron-3CDS	ENST00000379037	ENST00000378733		TCGA	LD	LUAD	TCGA-99-8033-01A	ACAP3	chr1	1227799	-	TMEM240	chr1	1475167	-
intron-3CDS	ENST00000379037	ENST00000425828		TCGA	LD	LUAD	TCGA-99-8033-01A	ACAP3	chr1	1227799	-	TMEM240	chr1	1475167	-
3UTR-3UTR	ENST00000535044	ENST00000430145		TCGA	LD	LUAD	TCGA-99-8033-01A	MVK	chr12	110012705	+	SEC1P	chr19	49183282	+
intron-3UTR	ENST00000539696	ENST00000430145		TCGA	LD	LUAD	TCGA-99-8033-01A	MVK	chr12	110012705	+	SEC1P	chr19	49183282	+
5CDS-3UTR	ENST00000228510	ENST00000430145		TCGA	LD	LUAD	TCGA-99-8033-01A	MVK	chr12	110012705	+	SEC1P	chr19	49183282	+
5CDS-3UTR	ENST00000392727	ENST00000430145		TCGA	LD	LUAD	TCGA-99-8033-01A	MVK	chr12	110012705	+	SEC1P	chr19	49183282	+
5CDS-3UTR	ENST00000539575	ENST00000430145		TCGA	LD	LUAD	TCGA-99-8033-01A	MVK	chr12	110012705	+	SEC1P	chr19	49183282	+
5UTR-3UTR	ENST00000541384	ENST00000430145		TCGA	LD	LUAD	TCGA-99-8033-01A	MVK	chr12	110012705	+	SEC1P	chr19	49183282	+
5CDS-intron	ENST00000415930	ENST00000421627		TCGA	LD	LUAD	TCGA-99-AA5R-01A	GPI	chr19	34859607	+	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000415930	ENST00000524065		TCGA	LD	LUAD	TCGA-99-AA5R-01A	GPI	chr19	34859607	+	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000356487	ENST00000421627		TCGA	LD	LUAD	TCGA-99-AA5R-01A	GPI	chr19	34859607	+	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000356487	ENST00000524065		TCGA	LD	LUAD	TCGA-99-AA5R-01A	GPI	chr19	34859607	+	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000586425	ENST00000421627		TCGA	LD	LUAD	TCGA-99-AA5R-01A	GPI	chr19	34859607	+	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000586425	ENST00000524065		TCGA	LD	LUAD	TCGA-99-AA5R-01A	GPI	chr19	34859607	+	DLGAP2	chr8	857912	+
Frame-shit	ENST00000253719	ENST00000297268		TCGA	LD	LUAD	TCGA-J2-8192-01A	NAPSA	chr19	50865226	-	COL1A2	chr7	94049853	+
5UTR-3CDS	ENST00000291572	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000291572	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-intron	ENST00000291572	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000398061	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-intron	ENST00000398061	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-3CDS	ENST00000327505	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5UTR-intron	ENST00000327505	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398063	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-intron	ENST00000398063	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000398058	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-intron	ENST00000398058	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000546158	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-intron	ENST00000546158	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000346798		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000354192		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000348990		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000357903		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000358918		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000359726		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000448388		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000440126		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-3CDS	ENST00000479117	ENST00000439274		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
intron-intron	ENST00000479117	ENST00000474136		TCGA	LD	LUAD	TCGA-J2-8194-01A	AGPAT3	chr21	45323900	+	APP	chr21	27284274	-
5CDS-5UTR	ENST00000445597	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5CDS-5UTR	ENST00000445597	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5CDS-intron	ENST00000445597	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000430092	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000430092	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-intron	ENST00000430092	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
intron-5UTR	ENST00000439375	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
intron-5UTR	ENST00000439375	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
intron-intron	ENST00000439375	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000400952	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000400952	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-intron	ENST00000400952	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000366849	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000366849	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-intron	ENST00000366849	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000366850	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-5UTR	ENST00000366850	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
5UTR-intron	ENST00000366850	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
3UTR-5UTR	ENST00000498360	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
3UTR-5UTR	ENST00000498360	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
3UTR-intron	ENST00000498360	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
intron-5UTR	ENST00000366848	ENST00000272167		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
intron-5UTR	ENST00000366848	ENST00000366837		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
intron-intron	ENST00000366848	ENST00000467015		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	DNAH14	chr1	225117537	+	EPHX1	chr1	226016426	+
Frame-shit	ENST00000379122	ENST00000284382		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
Frame-shit	ENST00000379122	ENST00000538112		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
In-frame	ENST00000379122	ENST00000394113		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000379122	ENST00000560944		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
Frame-shit	ENST00000332496	ENST00000284382		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
Frame-shit	ENST00000332496	ENST00000538112		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
In-frame	ENST00000332496	ENST00000394113		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000332496	ENST00000560944		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
intron-3CDS	ENST00000560263	ENST00000284382		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
intron-3CDS	ENST00000560263	ENST00000538112		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
intron-3CDS	ENST00000560263	ENST00000394113		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
intron-5UTR	ENST00000560263	ENST00000560944		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
Frame-shit	ENST00000411539	ENST00000284382		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
Frame-shit	ENST00000411539	ENST00000538112		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
In-frame	ENST00000411539	ENST00000394113		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000411539	ENST00000560944		TCGA	LD	LUAD	TCGA-J2-A4AD-01A	SEMA4B	chr15	90744967	+	CERS3	chr15	100943070	-
Frame-shit	ENST00000519937	ENST00000390547		TCGA	LD	LUAD	TCGA-L4-A4E6-01A	SFTPB	chr2	85889152	-	IGHA1	chr14	106174481	-
In-frame	ENST00000342375	ENST00000390547		TCGA	LD	LUAD	TCGA-L4-A4E6-01A	SFTPB	chr2	85889152	-	IGHA1	chr14	106174481	-
In-frame	ENST00000393822	ENST00000390547		TCGA	LD	LUAD	TCGA-L4-A4E6-01A	SFTPB	chr2	85889152	-	IGHA1	chr14	106174481	-
In-frame	ENST00000409383	ENST00000390547		TCGA	LD	LUAD	TCGA-L4-A4E6-01A	SFTPB	chr2	85889152	-	IGHA1	chr14	106174481	-
intron-5UTR	ENST00000317552	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000317552	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-intron	ENST00000317552	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000317552	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000317552	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000317552	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-intron	ENST00000453318	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000453318	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-intron	ENST00000380779	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380779	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-intron	ENST00000380780	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380780	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-intron	ENST00000380785	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380785	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380787	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380787	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-intron	ENST00000380787	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380787	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380787	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
5UTR-5UTR	ENST00000380787	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380782	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380782	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-intron	ENST00000380782	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380782	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380782	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000380782	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368708		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000487430		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-intron	ENST00000479925	ENST00000497140		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368710		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368709		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000479925	ENST00000368707		TCGA	LD	LUAD	TCGA-L9-A444-01A	MID1	chrX	10851673	-	S100A2	chr1	153536363	-
Frame-shit	ENST00000408916	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A444-01A	TAS2R41	chr7	143175077	+	IGHJ4	chr14	106330468	-
intron-5UTR	ENST00000324350	ENST00000536656		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000324350	ENST00000377346		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-intron	ENST00000324350	ENST00000484851		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000324350	ENST00000361110		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-intron	ENST00000324350	ENST00000543390		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-5UTR	ENST00000373191	ENST00000536656		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-5UTR	ENST00000373191	ENST00000377346		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-intron	ENST00000373191	ENST00000484851		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-5UTR	ENST00000373191	ENST00000361110		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-intron	ENST00000373191	ENST00000543390		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000397828	ENST00000536656		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000397828	ENST00000377346		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-intron	ENST00000397828	ENST00000484851		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000397828	ENST00000361110		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-intron	ENST00000397828	ENST00000543390		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-5UTR	ENST00000246314	ENST00000536656		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-5UTR	ENST00000246314	ENST00000377346		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-intron	ENST00000246314	ENST00000484851		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-5UTR	ENST00000246314	ENST00000361110		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
5CDS-intron	ENST00000246314	ENST00000543390		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000471099	ENST00000536656		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000471099	ENST00000377346		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-intron	ENST00000471099	ENST00000484851		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-5UTR	ENST00000471099	ENST00000361110		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
intron-intron	ENST00000471099	ENST00000543390		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	AGO3	chr1	36479649	+	PIK3CD	chr1	9770482	+
Frame-shit	ENST00000371065	ENST00000371191		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
Frame-shit	ENST00000371065	ENST00000407417		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-3UTR	ENST00000371065	ENST00000479364		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-3UTR	ENST00000371065	ENST00000371189		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-3UTR	ENST00000371065	ENST00000403491		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-3UTR	ENST00000371065	ENST00000371187		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-3UTR	ENST00000371065	ENST00000485903		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-intron	ENST00000371065	ENST00000371185		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-intron	ENST00000371065	ENST00000371184		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
5CDS-intron	ENST00000371065	ENST00000357977		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3CDS	ENST00000484243	ENST00000371191		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3CDS	ENST00000484243	ENST00000407417		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3UTR	ENST00000484243	ENST00000479364		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3UTR	ENST00000484243	ENST00000371189		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3UTR	ENST00000484243	ENST00000403491		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3UTR	ENST00000484243	ENST00000371187		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-3UTR	ENST00000484243	ENST00000485903		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-intron	ENST00000484243	ENST00000371185		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-intron	ENST00000484243	ENST00000371184		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
3UTR-intron	ENST00000484243	ENST00000357977		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	LEPROT	chr1	65891061	+	NFIA	chr1	61743192	+
In-frame	ENST00000372009	ENST00000371429		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000372009	ENST00000540001		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000372009	ENST00000537333		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000372009	ENST00000234725		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-intron	ENST00000372009	ENST00000480952		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
In-frame	ENST00000361297	ENST00000371429		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000361297	ENST00000540001		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000361297	ENST00000537333		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000361297	ENST00000234725		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5CDS-intron	ENST00000361297	ENST00000480952		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
intron-3CDS	ENST00000477968	ENST00000371429		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
intron-3UTR	ENST00000477968	ENST00000540001		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
intron-3UTR	ENST00000477968	ENST00000537333		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
intron-3UTR	ENST00000477968	ENST00000234725		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
intron-intron	ENST00000477968	ENST00000480952		TCGA	LD	LUAD	TCGA-L9-A5IP-01A	MAST2	chr1	46269744	+	NDC1	chr1	54238162	-
5UTR-3CDS	ENST00000379051	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
5UTR-3CDS	ENST00000379033	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
5UTR-3CDS	ENST00000298428	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
3UTR-3CDS	ENST00000495368	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
5UTR-3CDS	ENST00000304267	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
5UTR-3CDS	ENST00000379020	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
5UTR-3CDS	ENST00000379017	ENST00000461719		TCGA	LD	LUAD	TCGA-L9-A743-01A	SEC61A2	chr10	12171768	+	IGHJ4	chr14	106330462	-
intron-3CDS	ENST00000494373	ENST00000607452		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-intron	ENST00000494373	ENST00000303536		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-intron	ENST00000494373	ENST00000394666		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-intron	ENST00000494373	ENST00000606865		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-3UTR	ENST00000494373	ENST00000458030		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-3UTR	ENST00000494373	ENST00000422521		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-intron	ENST00000494373	ENST00000606082		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
intron-intron	ENST00000494373	ENST00000406041		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
In-frame	ENST00000405123	ENST00000607452		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000405123	ENST00000303536		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000405123	ENST00000394666		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000405123	ENST00000606865		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-3UTR	ENST00000405123	ENST00000458030		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-3UTR	ENST00000405123	ENST00000422521		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000405123	ENST00000606082		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000405123	ENST00000406041		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
In-frame	ENST00000185150	ENST00000607452		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000185150	ENST00000303536		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000185150	ENST00000394666		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000185150	ENST00000606865		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-3UTR	ENST00000185150	ENST00000458030		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-3UTR	ENST00000185150	ENST00000422521		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000185150	ENST00000606082		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000185150	ENST00000406041		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
In-frame	ENST00000378239	ENST00000607452		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000378239	ENST00000303536		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000378239	ENST00000394666		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000378239	ENST00000606865		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-3UTR	ENST00000378239	ENST00000458030		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-3UTR	ENST00000378239	ENST00000422521		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000378239	ENST00000606082		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-intron	ENST00000378239	ENST00000406041		TCGA	LD	LUAD	TCGA-L9-A8F4-01A	ERLEC1	chr2	54040210	+	ACYP2	chr2	54278095	+
5CDS-5UTR	ENST00000263681	ENST00000278550		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000263681	ENST00000533038		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000527458	ENST00000278550		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000527458	ENST00000533038		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000532497	ENST00000278550		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000532497	ENST00000533038		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
intron-5UTR	ENST00000532784	ENST00000278550		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
intron-5UTR	ENST00000532784	ENST00000533038		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	POLD3	chr11	74331134	+	TENM4	chr11	78781054	-
5UTR-3UTR	ENST00000556994	ENST00000281030		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	SRP54	chr14	35452421	+	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000546080	ENST00000281030		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	SRP54	chr14	35452421	+	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000216774	ENST00000281030		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	SRP54	chr14	35452421	+	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000555557	ENST00000281030		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	SRP54	chr14	35452421	+	THRSP	chr11	77778705	+
intron-3UTR	ENST00000555535	ENST00000281030		TCGA	LD	LUAD	TCGA-MN-A4N1-01A	SRP54	chr14	35452421	+	THRSP	chr11	77778705	+
5CDS-intron	ENST00000222120	ENST00000592540		TCGA	LD	LUAD	TCGA-MN-A4N4-01A	RAB3D	chr19	11446123	-	SPC24	chr19	11242283	-
5CDS-intron	ENST00000589655	ENST00000592540		TCGA	LD	LUAD	TCGA-MN-A4N4-01A	RAB3D	chr19	11446123	-	SPC24	chr19	11242283	-
In-frame	ENST00000401884	ENST00000402734		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000401884	ENST00000407025		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000401884	ENST00000272983		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000401884	ENST00000234038		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000401884	ENST00000404405		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000401884	ENST00000406106		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000401884	ENST00000401987		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
5CDS-3UTR	ENST00000401884	ENST00000485630		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000402734		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000407025		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000272983		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000234038		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000404405		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000406106		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000342631	ENST00000401987		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
5CDS-3UTR	ENST00000342631	ENST00000485630		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000402734		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000407025		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000272983		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000234038		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000404405		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000406106		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000405547	ENST00000401987		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
5CDS-3UTR	ENST00000405547	ENST00000485630		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000402734		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000407025		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000272983		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000234038		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000404405		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000406106		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
In-frame	ENST00000310397	ENST00000401987		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
5CDS-3UTR	ENST00000310397	ENST00000485630		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000402734		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000407025		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000272983		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000234038		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000404405		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000406106		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3CDS	ENST00000469006	ENST00000401987		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
intron-3UTR	ENST00000469006	ENST00000485630		TCGA	LD	LUAD	TCGA-MN-A4N5-01A	SNED1	chr2	241938467	+	PPP1R7	chr2	242102700	+
5UTR-intron	ENST00000522684	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000522684	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000522684	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000535192	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000535192	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000535192	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519465	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519465	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519465	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000517887	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000517887	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000517887	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000521059	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000521059	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000521059	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000395218	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000395218	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000395218	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000538769	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000538769	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000538769	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000340930	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000340930	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000340930	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519419	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519419	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519419	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000430260	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000430260	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000430260	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000519881	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000519881	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
5UTR-intron	ENST00000519881	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000520892	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000520892	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000520892	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519635	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519635	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000519635	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000517712	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000517712	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000517712	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000522950	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000522950	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000522950	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000520151	ENST00000520052		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000520151	ENST00000520734		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000520151	ENST00000518386		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	PTK2	chr8	142011224	-	ANGPT1	chr8	108509734	-
intron-intron	ENST00000357613	ENST00000568478		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000357613	ENST00000307921		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
5CDS-intron	ENST00000569540	ENST00000568478		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
5CDS-intron	ENST00000569540	ENST00000307921		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000561878	ENST00000568478		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000561878	ENST00000307921		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000567796	ENST00000568478		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000567796	ENST00000307921		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000566980	ENST00000568478		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000566980	ENST00000307921		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000569276	ENST00000568478		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
intron-intron	ENST00000569276	ENST00000307921		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	TMEM170A	chr16	75498130	-	ADAT1	chr16	75637069	-
5UTR-intron	ENST00000481847	ENST00000439951		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
5UTR-intron	ENST00000481847	ENST00000313733		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
5UTR-intron	ENST00000481847	ENST00000358053		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
5UTR-intron	ENST00000481847	ENST00000471817		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000243938	ENST00000439951		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000243938	ENST00000313733		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000243938	ENST00000358053		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000243938	ENST00000471817		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372632	ENST00000439951		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372632	ENST00000313733		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372632	ENST00000358053		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372632	ENST00000471817		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372630	ENST00000439951		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372630	ENST00000313733		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372630	ENST00000358053		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
intron-intron	ENST00000372630	ENST00000471817		TCGA	LD	LUAD	TCGA-MP-A4SV-01A	WFDC3	chr20	44387031	-	OSBPL2	chr20	60835037	+
5CDS-intron	ENST00000374595	ENST00000322940		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000374595	ENST00000466200		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000374595	ENST00000374624		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000325551	ENST00000322940		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000325551	ENST00000466200		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000325551	ENST00000374624		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000325580	ENST00000322940		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000325580	ENST00000466200		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
5CDS-intron	ENST00000325580	ENST00000374624		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000374594	ENST00000322940		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000374594	ENST00000466200		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000374594	ENST00000374624		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000488130	ENST00000322940		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000488130	ENST00000466200		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000488130	ENST00000374624		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000374593	ENST00000322940		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000374593	ENST00000466200		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
intron-intron	ENST00000374593	ENST00000374624		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	CTNNAL1	chr9	111753006	-	FAM206A	chr9	111712787	+
Frame-shit	ENST00000377748	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377748	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377748	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5CDS-3UTR	ENST00000377748	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377732	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377732	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377732	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5CDS-3UTR	ENST00000377732	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000400915	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000400915	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000400915	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5CDS-3UTR	ENST00000400915	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377740	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377740	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000377740	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5CDS-3UTR	ENST00000377740	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3CDS	ENST00000377737	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3CDS	ENST00000377737	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3CDS	ENST00000377737	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3UTR	ENST00000377737	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000537245	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000537245	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
Frame-shit	ENST00000537245	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5CDS-3UTR	ENST00000537245	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3CDS	ENST00000544978	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3CDS	ENST00000544978	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3CDS	ENST00000544978	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5UTR-3UTR	ENST00000544978	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000400913	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000400913	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000400913	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3UTR	ENST00000400913	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000340850	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000340850	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000340850	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3UTR	ENST00000340850	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000377725	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000377725	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000377725	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3UTR	ENST00000377725	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000377728	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000377728	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000377728	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3UTR	ENST00000377728	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000535355	ENST00000263932		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000535355	ENST00000417814		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3CDS	ENST00000535355	ENST00000413146		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
intron-3UTR	ENST00000535355	ENST00000479933		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	PLEKHG5	chr1	6556553	-	TNFRSF8	chr1	12202344	+
5CDS-intron	ENST00000375499	ENST00000455405		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SDHB	chr1	17380443	-	MST1L	chr1	17087597	-
5UTR-intron	ENST00000466613	ENST00000455405		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SDHB	chr1	17380443	-	MST1L	chr1	17087597	-
5UTR-3CDS	ENST00000370951	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000370951	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3UTR	ENST00000370951	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000405432	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000405432	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3UTR	ENST00000405432	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000370950	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000370950	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3UTR	ENST00000370950	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000454435	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3CDS	ENST00000454435	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
5UTR-3UTR	ENST00000454435	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3CDS	ENST00000436161	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3CDS	ENST00000436161	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3UTR	ENST00000436161	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3CDS	ENST00000484162	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3CDS	ENST00000484162	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3UTR	ENST00000484162	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3CDS	ENST00000370949	ENST00000226299		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3CDS	ENST00000370949	ENST00000606142		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
intron-3UTR	ENST00000370949	ENST00000503467		TCGA	LD	LUAD	TCGA-MP-A4SW-01A	SRSF11	chr1	70671463	+	LAP3	chr4	17590442	+
3UTR-5UTR	ENST00000433642	ENST00000591607		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000433642	ENST00000591747		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000433642	ENST00000270257		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-intron	ENST00000433642	ENST00000592351		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000433642	ENST00000391951		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000587722	ENST00000591607		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000587722	ENST00000591747		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000587722	ENST00000270257		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-intron	ENST00000587722	ENST00000592351		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000587722	ENST00000391951		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000588362	ENST00000591607		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000588362	ENST00000591747		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000588362	ENST00000270257		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-intron	ENST00000588362	ENST00000592351		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
3UTR-5UTR	ENST00000588362	ENST00000391951		TCGA	LD	LUAD	TCGA-MP-A4T4-01A	BLOC1S3	chr19	45683200	+	GEMIN7	chr19	45593365	+
Frame-shit	ENST00000556611	ENST00000604948		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000556611	ENST00000557565		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556611	ENST00000250377		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556611	ENST00000321130		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556611	ENST00000534898		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000556611	ENST00000603544		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556611	ENST00000605870		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000556611	ENST00000603588		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539826	ENST00000604948		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000539826	ENST00000557565		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539826	ENST00000250377		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539826	ENST00000321130		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539826	ENST00000534898		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000539826	ENST00000603544		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539826	ENST00000605870		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000539826	ENST00000603588		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000604948		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000557565		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000250377		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000321130		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000534898		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000603544		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000396582	ENST00000605870		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
intron-intron	ENST00000396582	ENST00000603588		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000432921	ENST00000604948		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000432921	ENST00000557565		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000432921	ENST00000250377		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000432921	ENST00000321130		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000432921	ENST00000534898		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000432921	ENST00000603544		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000432921	ENST00000605870		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000432921	ENST00000603588		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000345122	ENST00000604948		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000345122	ENST00000557565		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000345122	ENST00000250377		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000345122	ENST00000321130		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000345122	ENST00000534898		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000345122	ENST00000603544		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000345122	ENST00000605870		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000345122	ENST00000603588		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000433497	ENST00000604948		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000433497	ENST00000557565		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000433497	ENST00000250377		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000433497	ENST00000321130		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000433497	ENST00000534898		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
In-frame	ENST00000433497	ENST00000603544		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000433497	ENST00000605870		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000433497	ENST00000603588		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	ARHGAP5	chr14	32586493	+	KIAA0391	chr14	35742641	+
3UTR-intron	ENST00000333090	ENST00000475548		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000333090	ENST00000358743		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000333090	ENST00000347557		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000333090	ENST00000333137		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000333090	ENST00000404574		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000527881	ENST00000475548		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000527881	ENST00000358743		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000527881	ENST00000347557		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000527881	ENST00000333137		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
3UTR-intron	ENST00000527881	ENST00000404574		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	TSKU	chr11	76508937	+	SMTN	chr22	31499799	+
intron-3CDS	ENST00000376395	ENST00000417856		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000376395	ENST00000394067		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000376395	ENST00000421552		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000376395	ENST00000316924		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-intron	ENST00000376395	ENST00000394078		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-intron	ENST00000376395	ENST00000394066		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-intron	ENST00000376395	ENST00000394065		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000257468	ENST00000417856		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000257468	ENST00000394067		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000257468	ENST00000421552		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000257468	ENST00000316924		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-intron	ENST00000257468	ENST00000394078		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-intron	ENST00000257468	ENST00000394066		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-intron	ENST00000257468	ENST00000394065		TCGA	LD	LUAD	TCGA-MP-A4T6-01A	UBQLN1	chr9	86318437	-	KLC2	chr11	66033435	+
intron-3CDS	ENST00000398970	ENST00000359786		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000398970	ENST00000438665		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000398970	ENST00000575158		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000398970	ENST00000361007		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000398970	ENST00000545534		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-intron	ENST00000398970	ENST00000573198		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000300574	ENST00000359786		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000300574	ENST00000438665		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000300574	ENST00000575158		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000300574	ENST00000361007		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000300574	ENST00000545534		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-intron	ENST00000300574	ENST00000573198		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000574295	ENST00000359786		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000574295	ENST00000438665		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000574295	ENST00000575158		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000574295	ENST00000361007		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000574295	ENST00000545534		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-intron	ENST00000574295	ENST00000573198		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000572145	ENST00000359786		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000572145	ENST00000438665		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000572145	ENST00000575158		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000572145	ENST00000361007		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-3CDS	ENST00000572145	ENST00000545534		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
intron-intron	ENST00000572145	ENST00000573198		TCGA	LD	LUAD	TCGA-MP-A4T7-01A	CRK	chr17	1326912	-	MYO1C	chr17	1375522	-
5CDS-5UTR	ENST00000354293	ENST00000360565		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	AP2A1	chr19	50296349	+	SCAF1	chr19	50148278	+
3UTR-5UTR	ENST00000600199	ENST00000360565		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	AP2A1	chr19	50296349	+	SCAF1	chr19	50148278	+
5CDS-5UTR	ENST00000359032	ENST00000360565		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	AP2A1	chr19	50296349	+	SCAF1	chr19	50148278	+
Frame-shit	ENST00000262061	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000262061	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000262061	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000262061	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000262061	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000549043	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000549043	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000549043	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000549043	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000549043	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000552218	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000552218	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000552218	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000552218	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000552218	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000553231	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000553231	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000553231	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000553231	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000553231	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000552362	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000552362	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000552362	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000552362	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000552362	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000455864	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000455864	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000455864	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000455864	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000455864	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000416254	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000416254	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000416254	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-intron	ENST00000416254	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-intron	ENST00000416254	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000549116	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000549116	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000549116	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-intron	ENST00000549116	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-intron	ENST00000549116	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000551779	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000551779	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
Frame-shit	ENST00000551779	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000551779	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-intron	ENST00000551779	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000548281	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000548281	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-3CDS	ENST00000548281	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-intron	ENST00000548281	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
intron-intron	ENST00000548281	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5UTR-3CDS	ENST00000548753	ENST00000546500		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5UTR-3CDS	ENST00000548753	ENST00000340913		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5UTR-3CDS	ENST00000548753	ENST00000330752		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5UTR-intron	ENST00000548753	ENST00000547276		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5UTR-intron	ENST00000548753	ENST00000551803		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	COPZ1	chr12	54737100	+	HNRNPA1	chr12	54677596	+
5CDS-5UTR	ENST00000355849	ENST00000523510		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	KHDRBS3	chr8	136594316	+	PCAT2	chr8	128091378	-
intron-5UTR	ENST00000520981	ENST00000523510		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	KHDRBS3	chr8	136594316	+	PCAT2	chr8	128091378	-
intron-5UTR	ENST00000522578	ENST00000523510		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	KHDRBS3	chr8	136594316	+	PCAT2	chr8	128091378	-
In-frame	ENST00000371847	ENST00000371833		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
5CDS-intron	ENST00000371847	ENST00000476096		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
In-frame	ENST00000371843	ENST00000371833		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
5CDS-intron	ENST00000371843	ENST00000476096		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
5UTR-3CDS	ENST00000396199	ENST00000371833		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
5UTR-intron	ENST00000396199	ENST00000476096		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
5UTR-3CDS	ENST00000463938	ENST00000371833		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
5UTR-intron	ENST00000463938	ENST00000476096		TCGA	LD	LUAD	TCGA-MP-A4T8-01A	SPATA6	chr1	48937630	-	BEND5	chr1	49202124	-
Frame-shit	ENST00000399537	ENST00000260129		TCGA	LD	LUAD	TCGA-MP-A4T9-01A	TNRC18	chr7	5410006	-	TGS1	chr8	56725614	+
Frame-shit	ENST00000430969	ENST00000260129		TCGA	LD	LUAD	TCGA-MP-A4T9-01A	TNRC18	chr7	5410006	-	TGS1	chr8	56725614	+
intron-3CDS	ENST00000399434	ENST00000260129		TCGA	LD	LUAD	TCGA-MP-A4T9-01A	TNRC18	chr7	5410006	-	TGS1	chr8	56725614	+
intron-3UTR	ENST00000486207	ENST00000519937		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000486207	ENST00000342375		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000486207	ENST00000393822		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000486207	ENST00000409383		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000361010	ENST00000519937		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000361010	ENST00000342375		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000361010	ENST00000393822		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000361010	ENST00000409383		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000359642	ENST00000519937		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000359642	ENST00000342375		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000359642	ENST00000393822		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
5CDS-3UTR	ENST00000359642	ENST00000409383		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000331587	ENST00000519937		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000331587	ENST00000342375		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000331587	ENST00000393822		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000331587	ENST00000409383		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000396372	ENST00000519937		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000396372	ENST00000342375		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000396372	ENST00000393822		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
intron-3UTR	ENST00000396372	ENST00000409383		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	CALCA	chr11	14990372	-	SFTPB	chr2	85885978	-
Frame-shit	ENST00000521015	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
5CDS-5UTR	ENST00000521015	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
Frame-shit	ENST00000256398	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
5CDS-5UTR	ENST00000256398	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
intron-3CDS	ENST00000542181	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
intron-5UTR	ENST00000542181	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
3UTR-3CDS	ENST00000523760	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
3UTR-5UTR	ENST00000523760	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
Frame-shit	ENST00000524103	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
5CDS-5UTR	ENST00000524103	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
intron-3CDS	ENST00000537665	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
intron-5UTR	ENST00000537665	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
Frame-shit	ENST00000380353	ENST00000301908		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
5CDS-5UTR	ENST00000380353	ENST00000522209		TCGA	LD	LUAD	TCGA-MP-A4TE-01A	ELP3	chr8	27965493	+	PNOC	chr8	28196557	+
In-frame	ENST00000298310	ENST00000216373		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
In-frame	ENST00000298310	ENST00000543680		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000298310	ENST00000555794		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000382135	ENST00000216373		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000382135	ENST00000543680		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-intron	ENST00000382135	ENST00000555794		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
In-frame	ENST00000545773	ENST00000216373		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
In-frame	ENST00000545773	ENST00000543680		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000545773	ENST00000555794		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
5UTR-3CDS	ENST00000556925	ENST00000216373		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
5UTR-3CDS	ENST00000556925	ENST00000543680		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
5UTR-intron	ENST00000556925	ENST00000555794		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
In-frame	ENST00000546046	ENST00000216373		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
In-frame	ENST00000546046	ENST00000543680		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000546046	ENST00000555794		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556672	ENST00000216373		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556672	ENST00000543680		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-intron	ENST00000556672	ENST00000555794		TCGA	LD	LUAD	TCGA-MP-A4TI-01A	NEMF	chr14	50281472	-	SOS2	chr14	50587102	-
intron-intron	ENST00000425241	ENST00000326047		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000425241	ENST00000425755		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000323373	ENST00000326047		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000323373	ENST00000425755		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
5UTR-intron	ENST00000393102	ENST00000326047		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
5UTR-intron	ENST00000393102	ENST00000425755		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000406272	ENST00000326047		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000406272	ENST00000425755		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000478572	ENST00000326047		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
intron-intron	ENST00000478572	ENST00000425755		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	NR2C2	chr3	15003999	+	KIF15	chr3	44914821	+
5CDS-intron	ENST00000550746	ENST00000262027		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000550746	ENST00000315473		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000550746	ENST00000447721		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000319106	ENST00000262027		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000319106	ENST00000315473		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000319106	ENST00000447721		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000485960	ENST00000262027		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000485960	ENST00000315473		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5CDS-intron	ENST00000485960	ENST00000447721		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5UTR-intron	ENST00000393309	ENST00000262027		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5UTR-intron	ENST00000393309	ENST00000315473		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
5UTR-intron	ENST00000393309	ENST00000447721		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
intron-intron	ENST00000548679	ENST00000262027		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
intron-intron	ENST00000548679	ENST00000315473		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
intron-intron	ENST00000548679	ENST00000447721		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881169	+
intron-3CDS	ENST00000371471	ENST00000244043		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	ZNF217	chr20	52214170	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000371471	ENST00000478971		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	ZNF217	chr20	52214170	-	PTGIS	chr20	48130932	-
intron-3CDS	ENST00000302342	ENST00000244043		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	ZNF217	chr20	52214170	-	PTGIS	chr20	48130932	-
intron-5UTR	ENST00000302342	ENST00000478971		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	ZNF217	chr20	52214170	-	PTGIS	chr20	48130932	-
5UTR-3CDS	ENST00000540425	ENST00000244043		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	ZNF217	chr20	52214170	-	PTGIS	chr20	48130932	-
5UTR-5UTR	ENST00000540425	ENST00000478971		TCGA	LD	LUAD	TCGA-MP-A4TK-01A	ZNF217	chr20	52214170	-	PTGIS	chr20	48130932	-
5CDS-intron	ENST00000265594	ENST00000328913		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000265594	ENST00000473233		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000265594	ENST00000447025		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000265594	ENST00000414362		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000265594	ENST00000468976		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000492597	ENST00000328913		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000492597	ENST00000473233		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000492597	ENST00000447025		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000492597	ENST00000414362		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000492597	ENST00000468976		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000539926	ENST00000328913		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000539926	ENST00000473233		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000539926	ENST00000447025		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000539926	ENST00000414362		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5CDS-intron	ENST00000539926	ENST00000468976		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000489909	ENST00000328913		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000489909	ENST00000473233		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000489909	ENST00000447025		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000489909	ENST00000414362		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000489909	ENST00000468976		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	MCCC1	chr3	182751779	-	MCF2L2	chr3	182949000	-
intron-3CDS	ENST00000450466	ENST00000566228		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-3CDS	ENST00000450466	ENST00000323433		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-3CDS	ENST00000450466	ENST00000306030		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-intron	ENST00000450466	ENST00000568359		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000383233	ENST00000566228		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000383233	ENST00000323433		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000383233	ENST00000306030		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
5CDS-intron	ENST00000383233	ENST00000568359		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000542162	ENST00000566228		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000542162	ENST00000323433		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000542162	ENST00000306030		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
5CDS-intron	ENST00000542162	ENST00000568359		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000399707	ENST00000566228		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000399707	ENST00000323433		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
In-frame	ENST00000399707	ENST00000306030		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
5CDS-intron	ENST00000399707	ENST00000568359		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-3CDS	ENST00000475185	ENST00000566228		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-3CDS	ENST00000475185	ENST00000323433		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-3CDS	ENST00000475185	ENST00000306030		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-intron	ENST00000475185	ENST00000568359		TCGA	LD	LUAD	TCGA-MP-A5C7-01A	TMEM241	chr18	20979530	-	SNX29	chr16	12492303	+
intron-3CDS	ENST00000567004	ENST00000286149		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
intron-3CDS	ENST00000567004	ENST00000388958		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
intron-3CDS	ENST00000567004	ENST00000388956		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
intron-3CDS	ENST00000567004	ENST00000388957		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
intron-intron	ENST00000567004	ENST00000569064		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000542527	ENST00000286149		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000542527	ENST00000388958		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000542527	ENST00000388956		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000542527	ENST00000388957		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5CDS-intron	ENST00000542527	ENST00000569064		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5UTR-3CDS	ENST00000569656	ENST00000286149		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5UTR-3CDS	ENST00000569656	ENST00000388958		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5UTR-3CDS	ENST00000569656	ENST00000388956		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5UTR-3CDS	ENST00000569656	ENST00000388957		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5UTR-intron	ENST00000569656	ENST00000569064		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000562695	ENST00000286149		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000562695	ENST00000388958		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000562695	ENST00000388956		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
In-frame	ENST00000562695	ENST00000388957		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5CDS-intron	ENST00000562695	ENST00000569064		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	C16orf52	chr16	22019728	+	OTOA	chr16	21752042	+
5CDS-intron	ENST00000355078	ENST00000283426		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	CTNNA1	chr5	138163407	+	PLEKHG4B	chr5	113366	+
5CDS-intron	ENST00000302763	ENST00000283426		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	CTNNA1	chr5	138163407	+	PLEKHG4B	chr5	113366	+
5CDS-intron	ENST00000518825	ENST00000283426		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	CTNNA1	chr5	138163407	+	PLEKHG4B	chr5	113366	+
intron-intron	ENST00000520400	ENST00000283426		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	CTNNA1	chr5	138163407	+	PLEKHG4B	chr5	113366	+
intron-intron	ENST00000540387	ENST00000283426		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	CTNNA1	chr5	138163407	+	PLEKHG4B	chr5	113366	+
In-frame	ENST00000371269	ENST00000310074		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
Frame-shit	ENST00000371269	ENST00000512388		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
5CDS-5UTR	ENST00000371269	ENST00000515646		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
intron-3CDS	ENST00000537443	ENST00000310074		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
intron-3CDS	ENST00000537443	ENST00000512388		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
intron-5UTR	ENST00000537443	ENST00000515646		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
In-frame	ENST00000535035	ENST00000310074		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
Frame-shit	ENST00000535035	ENST00000512388		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
5CDS-5UTR	ENST00000535035	ENST00000515646		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	DHCR24	chr1	55330976	-	TADA2B	chr4	7055789	+
5CDS-intron	ENST00000261407	ENST00000433346		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-3UTR	ENST00000261407	ENST00000449039		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-intron	ENST00000261407	ENST00000007969		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-intron	ENST00000261407	ENST00000323702		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-intron	ENST00000261407	ENST00000443597		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-intron	ENST00000261407	ENST00000436789		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-intron	ENST00000261407	ENST00000429740		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-intron	ENST00000535021	ENST00000433346		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-3UTR	ENST00000535021	ENST00000449039		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-intron	ENST00000535021	ENST00000007969		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-intron	ENST00000535021	ENST00000323702		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-intron	ENST00000535021	ENST00000443597		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-intron	ENST00000535021	ENST00000436789		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
intron-intron	ENST00000535021	ENST00000429740		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	LRRC23	chr12	6991360	+
5CDS-3UTR	ENST00000261407	ENST00000412023		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	RPL13P5	chr12	6991360	+
intron-3UTR	ENST00000535021	ENST00000412023		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	LPCAT3	chr12	7125578	-	RPL13P5	chr12	6991360	+
Frame-shit	ENST00000299853	ENST00000567004		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000299853	ENST00000542527		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000299853	ENST00000569656		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
In-frame	ENST00000299853	ENST00000562695		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000564209	ENST00000567004		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000564209	ENST00000542527		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000564209	ENST00000569656		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
In-frame	ENST00000564209	ENST00000562695		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000418581	ENST00000567004		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000418581	ENST00000542527		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000418581	ENST00000569656		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
In-frame	ENST00000418581	ENST00000562695		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000359210	ENST00000567004		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000359210	ENST00000542527		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000359210	ENST00000569656		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
In-frame	ENST00000359210	ENST00000562695		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000567004		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000542527		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000569656		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000562695		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	POLR3E	chr16	22330267	+	C16orf52	chr16	22086808	+
Frame-shit	ENST00000392415	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000392415	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000392415	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
Frame-shit	ENST00000410062	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000410062	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000410062	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
Frame-shit	ENST00000602710	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602710	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602710	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
intron-3CDS	ENST00000602837	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
intron-3UTR	ENST00000602837	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
intron-3UTR	ENST00000602837	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
Frame-shit	ENST00000602959	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602959	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602959	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
Frame-shit	ENST00000602475	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602475	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602475	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
Frame-shit	ENST00000602632	ENST00000265107		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602632	ENST00000504564		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000602632	ENST00000510699		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	UBE2E3	chr2	181848820	+	WDR70	chr5	37697757	+
Frame-shit	ENST00000311437	ENST00000334482		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	ZNF490	chr19	12719972	-	PRDX2	chr19	12907980	-
In-frame	ENST00000311437	ENST00000301522		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	ZNF490	chr19	12719972	-	PRDX2	chr19	12907980	-
5CDS-intron	ENST00000311437	ENST00000435703		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	ZNF490	chr19	12719972	-	PRDX2	chr19	12907980	-
5UTR-3CDS	ENST00000465656	ENST00000334482		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	ZNF490	chr19	12719972	-	PRDX2	chr19	12907980	-
5UTR-3CDS	ENST00000465656	ENST00000301522		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	ZNF490	chr19	12719972	-	PRDX2	chr19	12907980	-
5UTR-intron	ENST00000465656	ENST00000435703		TCGA	LD	LUAD	TCGA-NJ-A4YF-01A	ZNF490	chr19	12719972	-	PRDX2	chr19	12907980	-
3UTR-5UTR	ENST00000564878	ENST00000331006		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
3UTR-intron	ENST00000564878	ENST00000353379		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
3UTR-intron	ENST00000564878	ENST00000505473		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
3UTR-intron	ENST00000564878	ENST00000514965		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-5UTR	ENST00000393062	ENST00000331006		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000393062	ENST00000353379		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000393062	ENST00000505473		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000393062	ENST00000514965		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-5UTR	ENST00000378247	ENST00000331006		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000378247	ENST00000353379		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000378247	ENST00000505473		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000378247	ENST00000514965		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-5UTR	ENST00000563972	ENST00000331006		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000563972	ENST00000353379		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000563972	ENST00000505473		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
intron-intron	ENST00000563972	ENST00000514965		TCGA	LD	LUAD	TCGA-NJ-A4YP-01A	SPIRE2	chr16	89884946	+	CDK10	chr16	89748722	+
5UTR-intron	ENST00000193029	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5UTR-intron	ENST00000193029	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5UTR-intron	ENST00000193029	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5UTR-intron	ENST00000193029	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000522874	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000522874	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000522874	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000522874	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000361847	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000361847	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000361847	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000361847	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000524214	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000524214	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000524214	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-intron	ENST00000524214	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000561150	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000561150	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000561150	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000561150	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000517966	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000517966	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000517966	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000517966	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000523231	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000523231	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000523231	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000523231	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000524370	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000524370	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000524370	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000524370	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522867	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522867	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522867	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522867	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000520266	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000520266	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000520266	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000520266	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000519058	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000519058	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000519058	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000519058	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522534	ENST00000560326		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522534	ENST00000216756		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522534	ENST00000536961		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
intron-intron	ENST00000522534	ENST00000541568		TCGA	LD	LUAD	TCGA-NJ-A55A-01A	MOK	chr14	102771299	-	CINP	chr14	102825924	-
5CDS-5UTR	ENST00000560626	ENST00000341853		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	PEAK1	chr15	77450845	-	DNM1P46	chr15	100333104	-
intron-5UTR	ENST00000558305	ENST00000341853		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	PEAK1	chr15	77450845	-	DNM1P46	chr15	100333104	-
intron-5UTR	ENST00000567337	ENST00000341853		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	PEAK1	chr15	77450845	-	DNM1P46	chr15	100333104	-
5CDS-5UTR	ENST00000312493	ENST00000341853		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	PEAK1	chr15	77450845	-	DNM1P46	chr15	100333104	-
intron-3CDS	ENST00000267970	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000267970	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000267970	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000346495	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000346495	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000346495	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000424443	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000424443	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000424443	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000561277	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000561277	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000561277	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000559494	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000559494	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000559494	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000558745	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000558745	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000558745	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000558394	ENST00000348639		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-3CDS	ENST00000558394	ENST00000326828		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
intron-intron	ENST00000558394	ENST00000559941		TCGA	LD	LUAD	TCGA-NJ-A55O-01A	TSPAN3	chr15	77339131	-	CHRNA3	chr15	78894606	-
5CDS-intron	ENST00000416947	ENST00000378289		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000453695		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378246		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000357717		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378278		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000396817		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378254		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378255		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378249		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378258		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000416947	ENST00000378242		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-5UTR	ENST00000416947	ENST00000492201		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378289		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000453695		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378246		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000357717		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378278		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000396817		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378254		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378255		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378249		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378258		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-intron	ENST00000493503	ENST00000378242		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
intron-5UTR	ENST00000493503	ENST00000492201		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378289		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000453695		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378246		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000357717		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378278		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000396817		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378254		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378255		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378249		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378258		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000270139	ENST00000378242		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-5UTR	ENST00000270139	ENST00000492201		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378289		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000453695		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378246		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000357717		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378278		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000396817		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378254		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378255		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378249		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378258		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-intron	ENST00000442357	ENST00000378242		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
5CDS-5UTR	ENST00000442357	ENST00000492201		TCGA	LD	LUAD	TCGA-O1-A52J-01A	IFNAR1	chr21	34713480	+	DCLRE1C	chr10	14951329	-
Frame-shit	ENST00000571589	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000571589	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000571589	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
Frame-shit	ENST00000574045	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000574045	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000574045	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
Frame-shit	ENST00000318282	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000318282	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000318282	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
Frame-shit	ENST00000572567	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000572567	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000572567	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
Frame-shit	ENST00000341243	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000341243	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000341243	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
intron-3CDS	ENST00000575537	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
intron-intron	ENST00000575537	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
intron-intron	ENST00000575537	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
Frame-shit	ENST00000573051	ENST00000268719		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000573051	ENST00000376345		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
5CDS-intron	ENST00000573051	ENST00000579871		TCGA	LD	LUAD	TCGA-S2-AA1A-01A	MKL2	chr16	14312855	+	GID4	chr17	17968494	+
In-frame	ENST00000393376	ENST00000313070		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000393376	ENST00000334010		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000393376	ENST00000412584		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000393376	ENST00000449022		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000393376	ENST00000476131		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473553	ENST00000313070		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473553	ENST00000334010		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473553	ENST00000412584		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5UTR-3CDS	ENST00000473553	ENST00000449022		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5UTR-intron	ENST00000473553	ENST00000476131		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000417368	ENST00000313070		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000417368	ENST00000334010		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000417368	ENST00000412584		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
In-frame	ENST00000417368	ENST00000449022		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5CDS-intron	ENST00000417368	ENST00000476131		TCGA	RV	LUSC	TCGA-94-7557-01A	AASS	chr7	121726066	-	CADPS2	chr7	122377122	-
5CDS-5UTR	ENST00000374736	ENST00000373656		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
5CDS-5UTR	ENST00000374736	ENST00000373654		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
intron-5UTR	ENST00000494467	ENST00000373656		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
intron-5UTR	ENST00000494467	ENST00000373654		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
5CDS-5UTR	ENST00000423487	ENST00000373656		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
5CDS-5UTR	ENST00000423487	ENST00000373654		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
5CDS-5UTR	ENST00000374733	ENST00000373656		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
5CDS-5UTR	ENST00000374733	ENST00000373654		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB26	chr9	125682223	-
In-frame	ENST00000394233	ENST00000354567		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000394233	ENST00000344720		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000394233	ENST00000317704		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000394233	ENST00000478255		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000454898	ENST00000354567		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000454898	ENST00000344720		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000454898	ENST00000317704		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000454898	ENST00000478255		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000536817	ENST00000354567		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000536817	ENST00000344720		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000536817	ENST00000317704		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000536817	ENST00000478255		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000370214	ENST00000354567		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000370214	ENST00000344720		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000370214	ENST00000317704		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
5CDS-intron	ENST00000370214	ENST00000478255		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
intron-3CDS	ENST00000315713	ENST00000354567		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
intron-3CDS	ENST00000315713	ENST00000344720		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
intron-intron	ENST00000315713	ENST00000317704		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
intron-intron	ENST00000315713	ENST00000478255		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
3UTR-3CDS	ENST00000484213	ENST00000354567		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
3UTR-3CDS	ENST00000484213	ENST00000344720		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
3UTR-intron	ENST00000484213	ENST00000317704		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
3UTR-intron	ENST00000484213	ENST00000478255		TCGA	RV	LUSC	TCGA-66-2756-01A	ABCD3	chr1	94965170	+	AK5	chr1	77876666	+
In-frame	ENST00000379303	ENST00000379226		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379303	ENST00000476598		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379303	ENST00000379220		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
In-frame	ENST00000336430	ENST00000379226		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000336430	ENST00000476598		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000336430	ENST00000379220		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000379295	ENST00000379226		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379295	ENST00000476598		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379295	ENST00000379220		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000492081	ENST00000379226		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000492081	ENST00000476598		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000492081	ENST00000379220		TCGA	RV	LUSC	TCGA-98-A53A-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-5UTR	ENST00000395146	ENST00000427191		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000436978		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000502971		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000411767		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000316707		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
5CDS-5UTR	ENST00000395146	ENST00000511467		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000427191		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000436978		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000502971		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000411767		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000316707		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000307808	ENST00000511467		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000427191		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000436978		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000502971		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000411767		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000316707		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-5UTR	ENST00000544085	ENST00000511467		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000427191		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000436978		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000502971		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000411767		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000316707		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
3UTR-5UTR	ENST00000511996	ENST00000511467		TCGA	RV	LUSC	TCGA-60-2695-01A	AFF1	chr4	87869723	+	PTPN13	chr4	87556405	+
intron-3CDS	ENST00000463381	ENST00000361669		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000463381	ENST00000546348		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000463381	ENST00000536043		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000463381	ENST00000439827		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000463381	ENST00000394720		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000473312	ENST00000361669		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000473312	ENST00000546348		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000473312	ENST00000536043		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
In-frame	ENST00000473312	ENST00000439827		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
In-frame	ENST00000473312	ENST00000394720		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000479901	ENST00000361669		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000479901	ENST00000546348		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000479901	ENST00000536043		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
In-frame	ENST00000479901	ENST00000439827		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
In-frame	ENST00000479901	ENST00000394720		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000397238	ENST00000361669		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000397238	ENST00000546348		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000397238	ENST00000536043		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
In-frame	ENST00000397238	ENST00000439827		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
In-frame	ENST00000397238	ENST00000394720		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000476375	ENST00000361669		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000476375	ENST00000546348		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000476375	ENST00000536043		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000476375	ENST00000439827		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000476375	ENST00000394720		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000335367	ENST00000361669		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000335367	ENST00000546348		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000335367	ENST00000536043		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000335367	ENST00000439827		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
intron-3CDS	ENST00000335367	ENST00000394720		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	GRM3	chr7	86479686	+
Frame-shit	ENST00000560302	ENST00000394196		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
Frame-shit	ENST00000560302	ENST00000557381		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000560302	ENST00000420239		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000560302	ENST00000536619		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000560302	ENST00000554122		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
Frame-shit	ENST00000394518	ENST00000394196		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
Frame-shit	ENST00000394518	ENST00000557381		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000394518	ENST00000420239		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000394518	ENST00000536619		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000394518	ENST00000554122		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
Frame-shit	ENST00000361243	ENST00000394196		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
Frame-shit	ENST00000361243	ENST00000557381		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000361243	ENST00000420239		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000361243	ENST00000536619		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5CDS-intron	ENST00000361243	ENST00000554122		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-3CDS	ENST00000560579	ENST00000394196		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-3CDS	ENST00000560579	ENST00000557381		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-intron	ENST00000560579	ENST00000420239		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-intron	ENST00000560579	ENST00000536619		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-intron	ENST00000560579	ENST00000554122		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-3CDS	ENST00000394510	ENST00000394196		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-3CDS	ENST00000394510	ENST00000557381		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-intron	ENST00000394510	ENST00000420239		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-intron	ENST00000394510	ENST00000536619		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
intron-intron	ENST00000394510	ENST00000554122		TCGA	RV	LUSC	TCGA-66-2758-01A	AKAP13	chr15	86077111	+	CHD2	chr15	93555575	+
5UTR-3CDS	ENST00000469224	ENST00000417220		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000469224	ENST00000431474		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000469224	ENST00000398755		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3UTR	ENST00000469224	ENST00000486510		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000394965	ENST00000417220		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000394965	ENST00000431474		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000394965	ENST00000398755		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3UTR	ENST00000394965	ENST00000486510		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000310271	ENST00000417220		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000310271	ENST00000431474		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000310271	ENST00000398755		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3UTR	ENST00000310271	ENST00000486510		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000484952	ENST00000417220		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000484952	ENST00000431474		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3CDS	ENST00000484952	ENST00000398755		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5UTR-3UTR	ENST00000484952	ENST00000486510		TCGA	RV	LUSC	TCGA-85-8479-01A	ALAS1	chr3	52232271	+	PARP3	chr3	51981756	+
5CDS-intron	ENST00000383777	ENST00000432519		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5CDS-5UTR	ENST00000383777	ENST00000334133		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5CDS-intron	ENST00000383777	ENST00000483671		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5CDS-intron	ENST00000399451	ENST00000432519		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5CDS-5UTR	ENST00000399451	ENST00000334133		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5CDS-intron	ENST00000399451	ENST00000483671		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5UTR-intron	ENST00000497037	ENST00000432519		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5UTR-5UTR	ENST00000497037	ENST00000334133		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5UTR-intron	ENST00000497037	ENST00000483671		TCGA	RV	LUSC	TCGA-18-3414-01A	ANKRD28	chr3	15719716	-	RFTN1	chr3	16535384	-
5CDS-5UTR	ENST00000297991	ENST00000558401		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-5UTR	ENST00000297991	ENST00000559916		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-5UTR	ENST00000297991	ENST00000544417		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-intron	ENST00000297991	ENST00000559220		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-5UTR	ENST00000493581	ENST00000558401		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-5UTR	ENST00000493581	ENST00000559916		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-5UTR	ENST00000493581	ENST00000544417		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
5CDS-intron	ENST00000493581	ENST00000559220		TCGA	RV	LUSC	TCGA-85-7697-01A	AQP3	chr9	33441152	-	B2M	chr15	45003720	+
In-frame	ENST00000524892	ENST00000256190		TCGA	RV	LUSC	TCGA-94-8491-01A	ARHGAP42	chr11	100558563	+	SBF2	chr11	9812230	-
5CDS-intron	ENST00000524892	ENST00000527019		TCGA	RV	LUSC	TCGA-94-8491-01A	ARHGAP42	chr11	100558563	+	SBF2	chr11	9812230	-
In-frame	ENST00000298815	ENST00000256190		TCGA	RV	LUSC	TCGA-94-8491-01A	ARHGAP42	chr11	100558563	+	SBF2	chr11	9812230	-
5CDS-intron	ENST00000298815	ENST00000527019		TCGA	RV	LUSC	TCGA-94-8491-01A	ARHGAP42	chr11	100558563	+	SBF2	chr11	9812230	-
intron-3CDS	ENST00000534060	ENST00000256190		TCGA	RV	LUSC	TCGA-94-8491-01A	ARHGAP42	chr11	100558563	+	SBF2	chr11	9812230	-
intron-intron	ENST00000534060	ENST00000527019		TCGA	RV	LUSC	TCGA-94-8491-01A	ARHGAP42	chr11	100558563	+	SBF2	chr11	9812230	-
5UTR-3CDS	ENST00000502271	ENST00000361377		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000396954		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000450852		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000510818		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000508922		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000582677		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000584946		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000527216		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
In-frame	ENST00000504924	ENST00000361377		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000396954		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000450852		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000510818		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000508922		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000582677		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000584946		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000504924	ENST00000527216		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-3CDS	ENST00000510591	ENST00000361377		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000396954		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000450852		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000510818		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000508922		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000582677		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000584946		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000527216		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
In-frame	ENST00000507646	ENST00000361377		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000396954		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000450852		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000510818		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000508922		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000582677		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000584946		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
5CDS-5UTR	ENST00000507646	ENST00000527216		TCGA	RV	LUSC	TCGA-21-1079-01A	ARL15	chr5	53606262	-	MOCS2	chr5	52404473	-
Frame-shit	ENST00000392443	ENST00000454872		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000392443	ENST00000473253		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000342695	ENST00000454872		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000342695	ENST00000473253		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000295548	ENST00000454872		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
5CDS-3UTR	ENST00000295548	ENST00000473253		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000400270	ENST00000454872		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000400270	ENST00000473253		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000482964	ENST00000454872		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000482964	ENST00000473253		TCGA	RV	LUSC	TCGA-60-2711-01A	ATP13A4	chr3	193272529	-	NAALADL2	chr3	174814580	+
In-frame	ENST00000374580	ENST00000405546		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374580	ENST00000402096		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374580	ENST00000404914		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-3UTR	ENST00000374580	ENST00000491867		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374580	ENST00000396411		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374580	ENST00000474739		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
In-frame	ENST00000374574	ENST00000405546		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374574	ENST00000402096		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374574	ENST00000404914		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-3UTR	ENST00000374574	ENST00000491867		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374574	ENST00000396411		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000374574	ENST00000474739		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
3UTR-3CDS	ENST00000479069	ENST00000405546		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
3UTR-5UTR	ENST00000479069	ENST00000402096		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
3UTR-5UTR	ENST00000479069	ENST00000404914		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
3UTR-3UTR	ENST00000479069	ENST00000491867		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
3UTR-5UTR	ENST00000479069	ENST00000396411		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
3UTR-5UTR	ENST00000479069	ENST00000474739		TCGA	RV	LUSC	TCGA-63-6202-01A	BMPR2	chr2	203332412	+	ATG4B	chr2	242590425	+
In-frame	ENST00000288602	ENST00000265715		TCGA	RV	LUSC	TCGA-22-1002-01A	BRAF	chr7	140534409	-	SLC26A4	chr7	107323647	+
5CDS-intron	ENST00000288602	ENST00000541474		TCGA	RV	LUSC	TCGA-22-1002-01A	BRAF	chr7	140534409	-	SLC26A4	chr7	107323647	+
5CDS-intron	ENST00000288602	ENST00000544569		TCGA	RV	LUSC	TCGA-22-1002-01A	BRAF	chr7	140534409	-	SLC26A4	chr7	107323647	+
5CDS-intron	ENST00000288602	ENST00000543100		TCGA	RV	LUSC	TCGA-22-1002-01A	BRAF	chr7	140534409	-	SLC26A4	chr7	107323647	+
5CDS-intron	ENST00000288602	ENST00000480841		TCGA	RV	LUSC	TCGA-22-1002-01A	BRAF	chr7	140534409	-	SLC26A4	chr7	107323647	+
Frame-shit	ENST00000566621	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
5CDS-intron	ENST00000566621	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
Frame-shit	ENST00000437989	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
5CDS-intron	ENST00000437989	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
Frame-shit	ENST00000569302	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
5CDS-intron	ENST00000569302	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
Frame-shit	ENST00000567389	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
5CDS-intron	ENST00000567389	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
Frame-shit	ENST00000562877	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
5CDS-intron	ENST00000562877	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
Frame-shit	ENST00000338183	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
5CDS-intron	ENST00000338183	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
intron-3CDS	ENST00000565792	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
intron-intron	ENST00000565792	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
intron-3CDS	ENST00000562489	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
intron-intron	ENST00000562489	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
intron-3CDS	ENST00000563167	ENST00000261275		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
intron-intron	ENST00000563167	ENST00000560050		TCGA	RV	LUSC	TCGA-58-A46J-01A	C15orf41	chr15	36950106	+	FAM189A1	chr15	29429397	-
Frame-shit	ENST00000431717	ENST00000469710		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000431717	ENST00000493101		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000431717	ENST00000264468		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000431717	ENST00000330540		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
5CDS-intron	ENST00000431717	ENST00000483949		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
5CDS-intron	ENST00000431717	ENST00000393627		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000430855	ENST00000469710		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000430855	ENST00000493101		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000430855	ENST00000264468		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000430855	ENST00000330540		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
5CDS-intron	ENST00000430855	ENST00000483949		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
5CDS-intron	ENST00000430855	ENST00000393627		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000264848	ENST00000469710		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000264848	ENST00000493101		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000264848	ENST00000264468		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
Frame-shit	ENST00000264848	ENST00000330540		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
5CDS-intron	ENST00000264848	ENST00000483949		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
5CDS-intron	ENST00000264848	ENST00000393627		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
intron-3CDS	ENST00000467942	ENST00000469710		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
intron-3CDS	ENST00000467942	ENST00000493101		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
intron-3CDS	ENST00000467942	ENST00000264468		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
intron-3CDS	ENST00000467942	ENST00000330540		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
intron-intron	ENST00000467942	ENST00000483949		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
intron-intron	ENST00000467942	ENST00000393627		TCGA	RV	LUSC	TCGA-58-A46L-01A	C3orf52	chr3	111821812	+	CD86	chr3	121836895	+
In-frame	ENST00000327064	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2737-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10960935	+
In-frame	ENST00000327064	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2737-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10960935	+
In-frame	ENST00000344150	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2737-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10960935	+
In-frame	ENST00000344150	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2737-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10960935	+
intron-3UTR	ENST00000511642	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000511642	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000511642	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000511642	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000511642	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000415497	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000415497	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000415497	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000415497	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000415497	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000372988	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000372988	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000372988	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000372988	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000372988	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000510503	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000510503	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000510503	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000510503	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000510503	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000511686	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-3UTR	ENST00000511686	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000511686	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-5UTR	ENST00000511686	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5UTR-intron	ENST00000511686	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000372991	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000372991	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000372991	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000372991	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372991	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000372987	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000372987	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000372987	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000372987	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000372987	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000414200	ENST00000482399		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-3UTR	ENST00000414200	ENST00000445902		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000414200	ENST00000478934		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-5UTR	ENST00000414200	ENST00000436044		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000448042		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000488583		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000441058		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000471761		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000443860		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000483351		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000383210		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000489236		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000485418		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000421357		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000428608		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
intron-intron	ENST00000414200	ENST00000484649		TCGA	RV	LUSC	TCGA-92-8063-01A	CCND3	chr6	42016239	-	VPS52	chr6	33237596	-
5CDS-intron	ENST00000337231	ENST00000509603		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
5CDS-intron	ENST00000337231	ENST00000319524		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
5CDS-5UTR	ENST00000337231	ENST00000268763		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
5CDS-5UTR	ENST00000337231	ENST00000398988		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
5CDS-intron	ENST00000337231	ENST00000581975		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
5CDS-intron	ENST00000337231	ENST00000582410		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
5CDS-intron	ENST00000337231	ENST00000578981		TCGA	RV	LUSC	TCGA-66-2800-01A	CDR2L	chr17	72984217	+	KSR1	chr17	25810684	+
In-frame	ENST00000264935	ENST00000505113		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
In-frame	ENST00000264935	ENST00000316418		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000264935	ENST00000512529		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000264935	ENST00000515206		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
5CDS-intron	ENST00000264935	ENST00000506456		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
In-frame	ENST00000444221	ENST00000505113		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
In-frame	ENST00000444221	ENST00000316418		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000444221	ENST00000512529		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000444221	ENST00000515206		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
5CDS-intron	ENST00000444221	ENST00000506456		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
intron-3CDS	ENST00000514507	ENST00000505113		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
intron-3CDS	ENST00000514507	ENST00000316418		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
intron-5UTR	ENST00000514507	ENST00000512529		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
intron-5UTR	ENST00000514507	ENST00000515206		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
intron-intron	ENST00000514507	ENST00000506456		TCGA	RV	LUSC	TCGA-85-8277-01A	CEP72	chr5	624694	+	AHRR	chr5	344008	+
Frame-shit	ENST00000244728	ENST00000421834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
Frame-shit	ENST00000244728	ENST00000370769		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000244728	ENST00000312431		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000244728	ENST00000370754		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000244728	ENST00000370788		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000244728	ENST00000361203		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000244728	ENST00000244364		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000244728	ENST00000446842		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-5UTR	ENST00000244728	ENST00000340834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-intron	ENST00000244728	ENST00000370765		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-intron	ENST00000244728	ENST00000518935		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
In-frame	ENST00000370819	ENST00000421834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
In-frame	ENST00000370819	ENST00000370769		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000370819	ENST00000312431		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000370819	ENST00000370754		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000370819	ENST00000370788		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000370819	ENST00000361203		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000370819	ENST00000244364		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000370819	ENST00000446842		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-5UTR	ENST00000370819	ENST00000340834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-intron	ENST00000370819	ENST00000370765		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-intron	ENST00000370819	ENST00000518935		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
Frame-shit	ENST00000535941	ENST00000421834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
Frame-shit	ENST00000535941	ENST00000370769		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000535941	ENST00000312431		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000535941	ENST00000370754		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000535941	ENST00000370788		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000535941	ENST00000361203		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000535941	ENST00000244364		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-3UTR	ENST00000535941	ENST00000446842		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-5UTR	ENST00000535941	ENST00000340834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-intron	ENST00000535941	ENST00000370765		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
5CDS-intron	ENST00000535941	ENST00000518935		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3CDS	ENST00000370808	ENST00000421834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3CDS	ENST00000370808	ENST00000370769		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000370808	ENST00000312431		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000370808	ENST00000370754		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000370808	ENST00000370788		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000370808	ENST00000361203		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000370808	ENST00000244364		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000370808	ENST00000446842		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-5UTR	ENST00000370808	ENST00000340834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-intron	ENST00000370808	ENST00000370765		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-intron	ENST00000370808	ENST00000518935		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3CDS	ENST00000467045	ENST00000421834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3CDS	ENST00000467045	ENST00000370769		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000467045	ENST00000312431		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000467045	ENST00000370754		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000467045	ENST00000370788		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000467045	ENST00000361203		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000467045	ENST00000244364		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-3UTR	ENST00000467045	ENST00000446842		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-5UTR	ENST00000467045	ENST00000340834		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-intron	ENST00000467045	ENST00000370765		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
intron-intron	ENST00000467045	ENST00000518935		TCGA	RV	LUSC	TCGA-52-7810-01A	COL21A1	chr6	56032922	-	DST	chr6	56382418	-
In-frame	ENST00000328300	ENST00000282268		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000328300	ENST00000338635		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000328300	ENST00000396027		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000328300	ENST00000511817		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
5CDS-intron	ENST00000328300	ENST00000509268		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
In-frame	ENST00000361603	ENST00000282268		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000361603	ENST00000338635		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000361603	ENST00000396027		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000361603	ENST00000511817		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
5CDS-intron	ENST00000361603	ENST00000509268		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
3UTR-3CDS	ENST00000477429	ENST00000282268		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
3UTR-3CDS	ENST00000477429	ENST00000338635		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
3UTR-3CDS	ENST00000477429	ENST00000396027		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
3UTR-3CDS	ENST00000477429	ENST00000511817		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
3UTR-intron	ENST00000477429	ENST00000509268		TCGA	RV	LUSC	TCGA-43-3920-01A	COL4A5	chrX	107683436	+	XRCC4	chr5	82648944	+
In-frame	ENST00000453996	ENST00000301011		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
In-frame	ENST00000453996	ENST00000452588		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
5UTR-3CDS	ENST00000378384	ENST00000301011		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
5UTR-3CDS	ENST00000378384	ENST00000452588		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
In-frame	ENST00000312060	ENST00000301011		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
In-frame	ENST00000312060	ENST00000452588		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
In-frame	ENST00000567949	ENST00000301011		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
In-frame	ENST00000567949	ENST00000452588		TCGA	RV	LUSC	TCGA-39-5035-01A	CTU2	chr16	88773618	+	ZC3H18	chr16	88675342	+
In-frame	ENST00000437600	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000437600	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000437600	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
In-frame	ENST00000292538	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000292538	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000292538	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
In-frame	ENST00000393824	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000393824	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000393824	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
In-frame	ENST00000547394	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000547394	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000547394	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
In-frame	ENST00000360264	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000360264	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000360264	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
In-frame	ENST00000425244	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000425244	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
5CDS-intron	ENST00000425244	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-3CDS	ENST00000292535	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000292535	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000292535	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-3CDS	ENST00000549414	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000549414	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000549414	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-3CDS	ENST00000556210	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000556210	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000556210	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-3CDS	ENST00000550008	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000550008	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000550008	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-3CDS	ENST00000546411	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000546411	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000546411	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-3CDS	ENST00000560541	ENST00000309295		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000560541	ENST00000529596		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
intron-intron	ENST00000560541	ENST00000533364		TCGA	RV	LUSC	TCGA-37-4132-01A	CUX1	chr7	101459373	+	EHBP1L1	chr11	65351712	+
Frame-shit	ENST00000282251	ENST00000356289		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000282251	ENST00000292067		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000282251	ENST00000533261		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000282251	ENST00000526620		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000433523	ENST00000356289		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000433523	ENST00000292067		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000433523	ENST00000533261		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
Frame-shit	ENST00000433523	ENST00000526620		TCGA	RV	LUSC	TCGA-43-7657-01A	CWF19L2	chr11	107286935	-	AMICA1	chr11	118076706	-
intron-5UTR	ENST00000371269	ENST00000318561		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000521315		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000437090		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000520605		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000522109		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000371269	ENST00000524255		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-intron	ENST00000371269	ENST00000522880		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000318561		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000521315		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000437090		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000520605		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000522109		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-5UTR	ENST00000537443	ENST00000524255		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
5CDS-intron	ENST00000537443	ENST00000522880		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000318561		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000521315		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000437090		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000520605		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000522109		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-5UTR	ENST00000535035	ENST00000524255		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
intron-intron	ENST00000535035	ENST00000522880		TCGA	RV	LUSC	TCGA-98-A53C-01A	DHCR24	chr1	55317396	-	SFTPC	chr8	22019313	+
Frame-shit	ENST00000343455	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000343455	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000343455	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000343455	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000343455	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
Frame-shit	ENST00000526495	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000526495	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000526495	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000526495	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000526495	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
Frame-shit	ENST00000393063	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000393063	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000393063	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000393063	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000393063	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
intron-3CDS	ENST00000527416	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
intron-intron	ENST00000527416	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
intron-intron	ENST00000527416	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
intron-intron	ENST00000527416	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
intron-intron	ENST00000527416	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
Frame-shit	ENST00000527414	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000527414	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000527414	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000527414	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000527414	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
In-frame	ENST00000556045	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000556045	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000556045	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000556045	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000556045	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
Frame-shit	ENST00000541352	ENST00000216277		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000541352	ENST00000557320		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000541352	ENST00000554130		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000541352	ENST00000557471		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-intron	ENST00000541352	ENST00000392990		TCGA	RV	LUSC	TCGA-77-8148-01A	DICER1	chr14	95569683	-	PAPOLA	chr14	97008580	+
5CDS-5UTR	ENST00000280886	ENST00000381602		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000397962		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000309776		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000509513		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000397959		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381591		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000403354		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381607		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000402736		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000602682		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381604		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381584		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000558098		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000545619		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000535374		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000473115		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000381602		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000397962		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000309776		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000509513		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000397959		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000381591		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000403354		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000381607		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000402736		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000602682		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000381604		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-5UTR	ENST00000381496	ENST00000381584		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000381496	ENST00000558098		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000381496	ENST00000545619		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000381496	ENST00000535374		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
5UTR-intron	ENST00000381496	ENST00000473115		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381602		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000397962		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000309776		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000509513		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000397959		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381591		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000403354		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381607		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000402736		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000602682		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381604		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381584		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000558098		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000545619		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000535374		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000473115		TCGA	RV	LUSC	TCGA-60-2721-01A	DIP2C	chr10	532399	-	ZMYND11	chr10	225934	+
Frame-shit	ENST00000394702	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394702	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394702	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394702	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394702	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
Frame-shit	ENST00000331242	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000331242	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000331242	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000331242	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000331242	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
Frame-shit	ENST00000413276	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000413276	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000413276	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000413276	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000413276	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
Frame-shit	ENST00000411766	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000411766	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000411766	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000411766	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000411766	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-3CDS	ENST00000432937	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000432937	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000432937	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000432937	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000432937	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
Frame-shit	ENST00000394703	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394703	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394703	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394703	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000394703	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-3CDS	ENST00000580710	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000580710	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000580710	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000580710	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
intron-intron	ENST00000580710	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5UTR-3CDS	ENST00000414194	ENST00000361669		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5UTR-intron	ENST00000414194	ENST00000546348		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5UTR-intron	ENST00000414194	ENST00000536043		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5UTR-intron	ENST00000414194	ENST00000439827		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5UTR-intron	ENST00000414194	ENST00000394720		TCGA	RV	LUSC	TCGA-22-4594-01A	DMTF1	chr7	86794366	+	GRM3	chr7	86415577	+
5CDS-intron	ENST00000232458	ENST00000447054		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000232458	ENST00000265022		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000232458	ENST00000344484		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000232458	ENST00000382164		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000232458	ENST00000544847		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000392692	ENST00000447054		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000392692	ENST00000265022		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000392692	ENST00000344484		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000392692	ENST00000382164		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000392692	ENST00000544847		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000427830	ENST00000447054		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000427830	ENST00000265022		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000427830	ENST00000344484		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000427830	ENST00000382164		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000427830	ENST00000544847		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000417960	ENST00000447054		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000417960	ENST00000265022		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000417960	ENST00000344484		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000417960	ENST00000382164		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000417960	ENST00000544847		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000441497	ENST00000447054		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000441497	ENST00000265022		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000441497	ENST00000344484		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000441497	ENST00000382164		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000441497	ENST00000544847		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000540509	ENST00000447054		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000540509	ENST00000265022		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000540509	ENST00000344484		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000540509	ENST00000382164		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-5UTR	ENST00000540509	ENST00000544847		TCGA	RV	LUSC	TCGA-77-8145-01A	ECT2	chr3	172486933	+	DGKG	chr3	186038496	-
5CDS-intron	ENST00000526148	ENST00000367545		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000526148	ENST00000367526		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000526148	ENST00000480333		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000525681	ENST00000367545		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000525681	ENST00000367526		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000525681	ENST00000480333		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000339995	ENST00000367545		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000339995	ENST00000367526		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000339995	ENST00000480333		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
intron-intron	ENST00000396525	ENST00000367545		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
intron-intron	ENST00000396525	ENST00000367526		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
intron-intron	ENST00000396525	ENST00000480333		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
intron-intron	ENST00000525995	ENST00000367545		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
intron-intron	ENST00000525995	ENST00000367526		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
intron-intron	ENST00000525995	ENST00000480333		TCGA	RV	LUSC	TCGA-63-6202-01A	EIF4G2	chr11	10818601	-	UTRN	chr6	144665237	+
5UTR-intron	ENST00000370918	ENST00000371347		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370918	ENST00000411689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370918	ENST00000452689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370918	ENST00000604908		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000304434	ENST00000371347		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000304434	ENST00000411689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000304434	ENST00000452689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000304434	ENST00000604908		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
intron-intron	ENST00000542638	ENST00000371347		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
intron-intron	ENST00000542638	ENST00000411689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
intron-intron	ENST00000542638	ENST00000452689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
intron-intron	ENST00000542638	ENST00000604908		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000541407	ENST00000371347		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000541407	ENST00000411689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000541407	ENST00000452689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000541407	ENST00000604908		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000486973	ENST00000371347		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000486973	ENST00000411689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000486973	ENST00000452689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000486973	ENST00000604908		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370913	ENST00000371347		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370913	ENST00000411689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370913	ENST00000452689		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
5UTR-intron	ENST00000370913	ENST00000604908		TCGA	RV	LUSC	TCGA-33-4589-01A	ELOVL5	chr6	53213615	-	SLC25A27	chr6	46649264	+
Frame-shit	ENST00000528282	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000528282	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000530481	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000530481	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000445890	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000445890	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000337057	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000337057	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
intron-3CDS	ENST00000530757	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
intron-intron	ENST00000530757	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000392427	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000392427	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000368128	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000368128	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000527411	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000527411	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
intron-3CDS	ENST00000524581	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
intron-intron	ENST00000524581	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000525271	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000525271	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
In-frame	ENST00000525193	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000525193	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
In-frame	ENST00000527659	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000527659	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
Frame-shit	ENST00000529208	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5CDS-intron	ENST00000529208	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
intron-3CDS	ENST00000531410	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
intron-intron	ENST00000531410	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5UTR-3CDS	ENST00000530148	ENST00000421865		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
5UTR-intron	ENST00000530148	ENST00000498257		TCGA	RV	LUSC	TCGA-66-2788-01A	EPB41L2	chr6	131247745	-	LAMA2	chr6	129704267	+
In-frame	ENST00000341928	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000341928	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000341928	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000341928	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
5CDS-intron	ENST00000341928	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000544123	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000544123	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000544123	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000544123	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
5CDS-intron	ENST00000544123	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000540638	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000540638	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000540638	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000540638	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
5CDS-intron	ENST00000540638	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000342933	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000342933	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000342933	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000342933	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
5CDS-intron	ENST00000342933	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000400111	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000400111	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000400111	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000400111	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
5CDS-intron	ENST00000400111	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542652	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542652	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542652	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542652	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-intron	ENST00000542652	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000427684	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000427684	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000427684	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000427684	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-intron	ENST00000427684	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542146	ENST00000446859		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542146	ENST00000316515		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542146	ENST00000522830		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-3CDS	ENST00000542146	ENST00000522526		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
intron-intron	ENST00000542146	ENST00000524327		TCGA	RV	LUSC	TCGA-33-4586-01A	EPB41L3	chr18	5478240	-	LRRC34	chr3	169513399	-
In-frame	ENST00000281821	ENST00000396578		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
5CDS-intron	ENST00000281821	ENST00000468753		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
In-frame	ENST00000409854	ENST00000396578		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
5CDS-intron	ENST00000409854	ENST00000468753		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
Frame-shit	ENST00000409938	ENST00000396578		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
5CDS-intron	ENST00000409938	ENST00000468753		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
Frame-shit	ENST00000392071	ENST00000396578		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
5CDS-intron	ENST00000392071	ENST00000468753		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
intron-3CDS	ENST00000469354	ENST00000396578		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
intron-intron	ENST00000469354	ENST00000468753		TCGA	RV	LUSC	TCGA-34-5236-01A	EPHA4	chr2	222428451	-	COL4A3	chr2	228102684	+
Frame-shit	ENST00000327355	ENST00000544974		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
Frame-shit	ENST00000327355	ENST00000560369		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
Frame-shit	ENST00000327355	ENST00000260382		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
Frame-shit	ENST00000327355	ENST00000443425		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
Frame-shit	ENST00000327355	ENST00000560691		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
5CDS-3UTR	ENST00000327355	ENST00000436542		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
5CDS-3UTR	ENST00000327355	ENST00000560158		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555748	ENST00000544974		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555748	ENST00000560369		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555748	ENST00000260382		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555748	ENST00000443425		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555748	ENST00000560691		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555748	ENST00000436542		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555748	ENST00000560158		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555696	ENST00000544974		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555696	ENST00000560369		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555696	ENST00000260382		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555696	ENST00000443425		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555696	ENST00000560691		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555696	ENST00000436542		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555696	ENST00000560158		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000553393	ENST00000544974		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000553393	ENST00000560369		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000553393	ENST00000260382		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000553393	ENST00000443425		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000553393	ENST00000560691		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000553393	ENST00000436542		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000553393	ENST00000560158		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555064	ENST00000544974		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555064	ENST00000560369		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555064	ENST00000260382		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555064	ENST00000443425		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555064	ENST00000560691		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555064	ENST00000436542		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555064	ENST00000560158		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555971	ENST00000544974		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555971	ENST00000560369		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555971	ENST00000260382		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555971	ENST00000443425		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3CDS	ENST00000555971	ENST00000560691		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555971	ENST00000436542		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
intron-3UTR	ENST00000555971	ENST00000560158		TCGA	RV	LUSC	TCGA-90-A4EE-01A	FAM174B	chr15	93198546	-	LRRC49	chr15	71300718	+
In-frame	ENST00000306858	ENST00000244728		TCGA	RV	LUSC	TCGA-85-A4CN-01A	FAM83B	chr6	54735488	+	COL21A1	chr6	55966323	-
In-frame	ENST00000306858	ENST00000370819		TCGA	RV	LUSC	TCGA-85-A4CN-01A	FAM83B	chr6	54735488	+	COL21A1	chr6	55966323	-
In-frame	ENST00000306858	ENST00000535941		TCGA	RV	LUSC	TCGA-85-A4CN-01A	FAM83B	chr6	54735488	+	COL21A1	chr6	55966323	-
5CDS-intron	ENST00000306858	ENST00000370808		TCGA	RV	LUSC	TCGA-85-A4CN-01A	FAM83B	chr6	54735488	+	COL21A1	chr6	55966323	-
5CDS-intron	ENST00000306858	ENST00000467045		TCGA	RV	LUSC	TCGA-85-A4CN-01A	FAM83B	chr6	54735488	+	COL21A1	chr6	55966323	-
5CDS-5UTR	ENST00000583610	ENST00000309156		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000309185		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000394211		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000583610	ENST00000578702		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000583610	ENST00000445327		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000394209		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000394204		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000309156		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000309185		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000394211		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394294	ENST00000578702		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394294	ENST00000445327		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000394209		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000394204		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000309156		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000309185		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000394211		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000264658	ENST00000578702		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000264658	ENST00000445327		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000394209		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000394204		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000309156		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000309185		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000394211		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000577399	ENST00000578702		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000577399	ENST00000445327		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000394209		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000394204		TCGA	RV	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
Frame-shit	ENST00000334134	ENST00000379214		TCGA	RV	LUSC	TCGA-66-2767-01A	FGF3	chr11	69631088	-	LGR4	chr11	27434407	-
5CDS-intron	ENST00000334134	ENST00000389858		TCGA	RV	LUSC	TCGA-66-2767-01A	FGF3	chr11	69631088	-	LGR4	chr11	27434407	-
5CDS-intron	ENST00000334134	ENST00000480977		TCGA	RV	LUSC	TCGA-66-2767-01A	FGF3	chr11	69631088	-	LGR4	chr11	27434407	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUSC	TCGA-63-7022-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1746245	+
In-frame	ENST00000398540	ENST00000264977		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000398540	ENST00000490467		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
In-frame	ENST00000398540	ENST00000334546		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000398540	ENST00000492624		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000398540	ENST00000469270		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000542259	ENST00000264977		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
In-frame	ENST00000542259	ENST00000490467		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000542259	ENST00000334546		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000542259	ENST00000492624		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000542259	ENST00000469270		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000497757	ENST00000264977		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000497757	ENST00000490467		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000497757	ENST00000334546		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000497757	ENST00000492624		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000497757	ENST00000469270		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000478263	ENST00000264977		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000478263	ENST00000490467		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000478263	ENST00000334546		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000478263	ENST00000492624		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000478263	ENST00000469270		TCGA	RV	LUSC	TCGA-66-2785-01A	FRMD4B	chr3	69271009	-	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000503238	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000503238	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000503238	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000503238	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000503238	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000358350	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000358350	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000358350	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000358350	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000358350	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000537810	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000537810	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000537810	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000537810	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000537810	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5UTR-3CDS	ENST00000264319	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5UTR-3CDS	ENST00000264319	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5UTR-intron	ENST00000264319	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5UTR-intron	ENST00000264319	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5UTR-intron	ENST00000264319	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000507711	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000507711	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000507711	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000507711	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
5CDS-intron	ENST00000507711	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-3CDS	ENST00000514783	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-3CDS	ENST00000514783	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000514783	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000514783	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000514783	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-3CDS	ENST00000507873	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-3CDS	ENST00000507873	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000507873	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000507873	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000507873	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-3CDS	ENST00000506685	ENST00000326877		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-3CDS	ENST00000506685	ENST00000539056		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000506685	ENST00000382224		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000506685	ENST00000382226		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
intron-intron	ENST00000506685	ENST00000512376		TCGA	RV	LUSC	TCGA-21-5786-01A	FRYL	chr4	48636308	-	LCORL	chr4	17847524	-
Frame-shit	ENST00000333743	ENST00000353809		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
In-frame	ENST00000333743	ENST00000354638		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
5CDS-intron	ENST00000333743	ENST00000382996		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
Frame-shit	ENST00000555083	ENST00000353809		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
In-frame	ENST00000555083	ENST00000354638		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
5CDS-intron	ENST00000555083	ENST00000382996		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
intron-3CDS	ENST00000554786	ENST00000353809		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
intron-3CDS	ENST00000554786	ENST00000354638		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
intron-intron	ENST00000554786	ENST00000382996		TCGA	RV	LUSC	TCGA-22-5489-01A	GABRG3	chr15	27271968	+	OCA2	chr15	28000618	-
Frame-shit	ENST00000568107	ENST00000357716		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
Frame-shit	ENST00000568107	ENST00000486284		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
Frame-shit	ENST00000568107	ENST00000389336		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
Frame-shit	ENST00000568107	ENST00000402647		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
Frame-shit	ENST00000568107	ENST00000403881		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
5CDS-intron	ENST00000568107	ENST00000458641		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000567335	ENST00000357716		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000567335	ENST00000486284		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000567335	ENST00000389336		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000567335	ENST00000402647		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000567335	ENST00000403881		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
intron-intron	ENST00000567335	ENST00000458641		TCGA	RV	LUSC	TCGA-18-3412-01A	GAN	chr16	81348885	+	GRM7	chr3	7188139	+
Frame-shit	ENST00000204726	ENST00000315585		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000204726	ENST00000266880		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000204726	ENST00000443047		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000204726	ENST00000450056		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000204726	ENST00000537522		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000204726	ENST00000541837		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000204726	ENST00000432561		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000204726	ENST00000541341		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000450791	ENST00000315585		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000450791	ENST00000266880		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000450791	ENST00000443047		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000450791	ENST00000450056		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000450791	ENST00000537522		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000450791	ENST00000541837		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000450791	ENST00000432561		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000450791	ENST00000541341		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000456883	ENST00000315585		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000456883	ENST00000266880		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000456883	ENST00000443047		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000456883	ENST00000450056		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
Frame-shit	ENST00000456883	ENST00000537522		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000456883	ENST00000541837		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000456883	ENST00000432561		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
5CDS-5UTR	ENST00000456883	ENST00000541341		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000537452	ENST00000315585		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000537452	ENST00000266880		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000537452	ENST00000443047		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000537452	ENST00000450056		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000537452	ENST00000537522		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000537452	ENST00000541837		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000537452	ENST00000432561		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000537452	ENST00000541341		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000545875	ENST00000315585		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000545875	ENST00000266880		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000545875	ENST00000443047		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000545875	ENST00000450056		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000545875	ENST00000537522		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000545875	ENST00000541837		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000545875	ENST00000432561		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000545875	ENST00000541341		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000534967	ENST00000315585		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000534967	ENST00000266880		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000534967	ENST00000443047		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000534967	ENST00000450056		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-3CDS	ENST00000534967	ENST00000537522		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000534967	ENST00000541837		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000534967	ENST00000432561		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
intron-5UTR	ENST00000534967	ENST00000541341		TCGA	RV	LUSC	TCGA-33-6738-01A	GOLGA3	chr12	133357384	-	CHFR	chr12	133419669	-
3UTR-intron	ENST00000258733	ENST00000367021		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000258733	ENST00000542854		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000381990	ENST00000367021		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000381990	ENST00000542854		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
intron-intron	ENST00000409458	ENST00000367021		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
intron-intron	ENST00000409458	ENST00000542854		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
5CDS-intron	ENST00000539136	ENST00000367021		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
5CDS-intron	ENST00000539136	ENST00000542854		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000453162	ENST00000367021		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000453162	ENST00000542854		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000478451	ENST00000367021		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
3UTR-intron	ENST00000478451	ENST00000542854		TCGA	RV	LUSC	TCGA-98-8021-01A	GPNMB	chr7	23314253	+	IRF6	chr1	209979465	-
Frame-shit	ENST00000454366	ENST00000381031		TCGA	RV	LUSC	TCGA-52-7810-01A	GTSE1	chr22	46693376	+	TTC38	chr22	46685723	+
Frame-shit	ENST00000454366	ENST00000445282		TCGA	RV	LUSC	TCGA-52-7810-01A	GTSE1	chr22	46693376	+	TTC38	chr22	46685723	+
Frame-shit	ENST00000311127	ENST00000393469		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
Frame-shit	ENST00000311127	ENST00000423114		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
Frame-shit	ENST00000311127	ENST00000469902		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
5CDS-5UTR	ENST00000311127	ENST00000314584		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
5CDS-intron	ENST00000311127	ENST00000430155		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
5CDS-intron	ENST00000311127	ENST00000465475		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-3CDS	ENST00000477536	ENST00000393469		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-3CDS	ENST00000477536	ENST00000423114		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-3CDS	ENST00000477536	ENST00000469902		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-5UTR	ENST00000477536	ENST00000314584		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-intron	ENST00000477536	ENST00000430155		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-intron	ENST00000477536	ENST00000465475		TCGA	RV	LUSC	TCGA-77-A5GH-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124854626	-
intron-intron	ENST00000542955	ENST00000367545		TCGA	RV	LUSC	TCGA-46-3767-01A	IGFBP4	chr17	38613983	+	UTRN	chr6	144665237	+
intron-intron	ENST00000542955	ENST00000367526		TCGA	RV	LUSC	TCGA-46-3767-01A	IGFBP4	chr17	38613983	+	UTRN	chr6	144665237	+
intron-intron	ENST00000542955	ENST00000480333		TCGA	RV	LUSC	TCGA-46-3767-01A	IGFBP4	chr17	38613983	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000269593	ENST00000367545		TCGA	RV	LUSC	TCGA-46-3767-01A	IGFBP4	chr17	38613983	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000269593	ENST00000367526		TCGA	RV	LUSC	TCGA-46-3767-01A	IGFBP4	chr17	38613983	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000269593	ENST00000480333		TCGA	RV	LUSC	TCGA-46-3767-01A	IGFBP4	chr17	38613983	+	UTRN	chr6	144665237	+
5UTR-5UTR	ENST00000412504	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000412504	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000412504	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000072516	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000072516	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000072516	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000443369	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000443369	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000443369	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000439062	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000439062	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000439062	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000447382	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000447382	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000447382	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000422485	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000422485	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000422485	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000434491	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000434491	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000434491	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000422940	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000422940	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000422940	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-5UTR	ENST00000317757	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000317757	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
5UTR-intron	ENST00000317757	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
3UTR-5UTR	ENST00000465496	ENST00000433971		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
3UTR-intron	ENST00000465496	ENST00000345063		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
3UTR-intron	ENST00000465496	ENST00000488841		TCGA	RV	LUSC	TCGA-90-6837-01A	IL1RAP	chr3	190232008	+	TPRG1	chr3	188844846	+
Frame-shit	ENST00000371712	ENST00000313050		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
5CDS-intron	ENST00000371712	ENST00000467838		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
5CDS-intron	ENST00000371712	ENST00000371706		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
5CDS-intron	ENST00000371712	ENST00000313084		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
5CDS-intron	ENST00000371712	ENST00000290037		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
5CDS-intron	ENST00000371712	ENST00000431893		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
5CDS-intron	ENST00000371712	ENST00000398335		TCGA	RV	LUSC	TCGA-56-6546-01A	INPP5E	chr9	139328489	-	SEC16A	chr9	139352036	-
In-frame	ENST00000260386	ENST00000389629		TCGA	RV	LUSC	TCGA-85-8071-01A	ITPKA	chr15	41786614	+	RTF1	chr15	41745099	+
5CDS-3UTR	ENST00000260386	ENST00000462276		TCGA	RV	LUSC	TCGA-85-8071-01A	ITPKA	chr15	41786614	+	RTF1	chr15	41745099	+
Frame-shit	ENST00000341776	ENST00000344537		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
Frame-shit	ENST00000341776	ENST00000355917		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
Frame-shit	ENST00000341776	ENST00000338950		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
5CDS-intron	ENST00000341776	ENST00000462989		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000397311	ENST00000344537		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000397311	ENST00000355917		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000397311	ENST00000338950		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-intron	ENST00000397311	ENST00000462989		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000541660	ENST00000344537		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000541660	ENST00000355917		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000541660	ENST00000338950		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-intron	ENST00000541660	ENST00000462989		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000474854	ENST00000344537		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000474854	ENST00000355917		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-3CDS	ENST00000474854	ENST00000338950		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
intron-intron	ENST00000474854	ENST00000462989		TCGA	RV	LUSC	TCGA-98-A53A-01A	JARID2	chr6	15246815	+	DTNBP1	chr6	15638035	-
5CDS-intron	ENST00000540235	ENST00000233057		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000540235	ENST00000395127		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000540235	ENST00000405334		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000393930	ENST00000233057		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000393930	ENST00000395127		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000393930	ENST00000405334		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000393931	ENST00000233057		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000393931	ENST00000395127		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000393931	ENST00000405334		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000310706	ENST00000233057		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000310706	ENST00000395127		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000310706	ENST00000405334		TCGA	RV	LUSC	TCGA-85-8582-01A	JUP	chr17	39775692	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000388996	ENST00000519595		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000388996	ENST00000518642		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
In-frame	ENST00000388996	ENST00000250173		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
5CDS-intron	ENST00000388996	ENST00000520446		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000521134	ENST00000519595		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000521134	ENST00000518642		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000521134	ENST00000250173		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
intron-intron	ENST00000521134	ENST00000520446		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000519445	ENST00000519595		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000519445	ENST00000518642		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
In-frame	ENST00000519445	ENST00000250173		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
5CDS-intron	ENST00000519445	ENST00000520446		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KCNQ3	chr8	133492394	-	LRRC6	chr8	133596026	-
5CDS-intron	ENST00000297591	ENST00000519824		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-intron	ENST00000297591	ENST00000522746		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-5UTR	ENST00000297591	ENST00000523509		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-5UTR	ENST00000297591	ENST00000401979		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-5UTR	ENST00000297591	ENST00000519110		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-intron	ENST00000297591	ENST00000522250		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-5UTR	ENST00000297591	ENST00000517654		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-intron	ENST00000297591	ENST00000519540		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-intron	ENST00000297591	ENST00000522941		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
5CDS-5UTR	ENST00000297591	ENST00000518879		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000437199	ENST00000519824		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000437199	ENST00000522746		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000437199	ENST00000523509		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000437199	ENST00000401979		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000437199	ENST00000519110		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000437199	ENST00000522250		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000437199	ENST00000517654		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000437199	ENST00000519540		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000437199	ENST00000522941		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000437199	ENST00000518879		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000421249	ENST00000519824		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000421249	ENST00000522746		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000421249	ENST00000523509		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000421249	ENST00000401979		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000421249	ENST00000519110		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000421249	ENST00000522250		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000421249	ENST00000517654		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000421249	ENST00000519540		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000421249	ENST00000522941		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000421249	ENST00000518879		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000523405	ENST00000519824		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000523405	ENST00000522746		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000523405	ENST00000523509		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000523405	ENST00000401979		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000523405	ENST00000519110		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000523405	ENST00000522250		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000523405	ENST00000517654		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000523405	ENST00000519540		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-intron	ENST00000523405	ENST00000522941		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000523405	ENST00000518879		TCGA	RV	LUSC	TCGA-98-A539-01A	KIAA1429	chr8	95511602	-	FAM49B	chr8	130983241	-
Frame-shit	ENST00000251879	ENST00000262352		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000251879	ENST00000490167		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
Frame-shit	ENST00000414202	ENST00000262352		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000414202	ENST00000490167		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
Frame-shit	ENST00000381532	ENST00000262352		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000381532	ENST00000490167		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
Frame-shit	ENST00000418622	ENST00000262352		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000418622	ENST00000490167		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
Frame-shit	ENST00000449720	ENST00000262352		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000449720	ENST00000490167		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5720750	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000361961	ENST00000536774		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361961	ENST00000327441		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-5UTR	ENST00000361961	ENST00000539062		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361961	ENST00000556451		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361961	ENST00000396294		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361961	ENST00000545536		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361961	ENST00000537471		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361961	ENST00000539174		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000536774		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000327441		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-5UTR	ENST00000395670	ENST00000539062		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000556451		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000396294		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000545536		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000537471		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000395670	ENST00000539174		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000536774		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000327441		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-5UTR	ENST00000544797	ENST00000539062		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000556451		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000396294		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000545536		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000537471		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000544797	ENST00000539174		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000536774		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000327441		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-5UTR	ENST00000361418	ENST00000539062		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000556451		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000396294		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000545536		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000537471		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000361418	ENST00000539174		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000536774		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000327441		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-5UTR	ENST00000541463	ENST00000539062		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000556451		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000396294		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000545536		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000537471		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
5CDS-intron	ENST00000541463	ENST00000539174		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000536774		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000327441		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-5UTR	ENST00000547745	ENST00000539062		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000556451		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000396294		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000545536		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000537471		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
intron-intron	ENST00000547745	ENST00000539174		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	KIF21A	chr12	39836729	-	MIPOL1	chr14	37736143	+
Frame-shit	ENST00000407071	ENST00000541742		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
Frame-shit	ENST00000407071	ENST00000490107		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
Frame-shit	ENST00000407071	ENST00000388985		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
3UTR-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
3UTR-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
3UTR-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
3UTR-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
3UTR-intron	ENST00000479506	ENST00000403792		TCGA	RV	LUSC	TCGA-85-8481-01A	KIF26B	chr1	245530669	+	SMYD3	chr1	245927451	-
Frame-shit	ENST00000288135	ENST00000442697		TCGA	RV	LUSC	TCGA-96-8169-01A	KIT	chr4	55598164	+	DNAJB14	chr4	100851778	-
5CDS-5UTR	ENST00000288135	ENST00000471738		TCGA	RV	LUSC	TCGA-96-8169-01A	KIT	chr4	55598164	+	DNAJB14	chr4	100851778	-
intron-3CDS	ENST00000519476	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
intron-3CDS	ENST00000519476	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
intron-3CDS	ENST00000519476	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
intron-3CDS	ENST00000519476	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
intron-3CDS	ENST00000519476	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000297720	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000297720	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000297720	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000297720	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000297720	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000524874	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000524874	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000524874	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000524874	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000524874	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000379957	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000379957	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000379957	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000379957	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000379957	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000523983	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000523983	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000523983	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000523983	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000523983	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000527710	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000527710	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000527710	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000527710	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
In-frame	ENST00000527710	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
3UTR-3CDS	ENST00000528827	ENST00000391945		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
3UTR-3CDS	ENST00000528827	ENST00000391944		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
3UTR-3CDS	ENST00000528827	ENST00000485403		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
3UTR-3CDS	ENST00000528827	ENST00000391940		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
3UTR-3CDS	ENST00000528827	ENST00000221481		TCGA	RV	LUSC	TCGA-85-A53L-01A	LETM2	chr8	38262024	+	ERCC2	chr19	45872405	-
Frame-shit	ENST00000370577	ENST00000357250		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370577	ENST00000320755		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370577	ENST00000370499		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370577	ENST00000489611		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370577	ENST00000370496		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
Frame-shit	ENST00000370570	ENST00000357250		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370570	ENST00000320755		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370570	ENST00000370499		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370570	ENST00000489611		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
5CDS-intron	ENST00000370570	ENST00000370496		TCGA	RV	LUSC	TCGA-33-AASB-01A	LMBRD1	chr6	70490386	-	COL9A1	chr6	71004266	-
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
In-frame	ENST00000354476	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000390003	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000418533	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000402934	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000404525	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000407925	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	LUSC	TCGA-22-5491-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
5CDS-5UTR	ENST00000217246	ENST00000348031		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
5CDS-5UTR	ENST00000217246	ENST00000217173		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
5CDS-5UTR	ENST00000310348	ENST00000348031		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
5CDS-5UTR	ENST00000310348	ENST00000217173		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000464883	ENST00000348031		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000464883	ENST00000217173		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000402914	ENST00000348031		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000402914	ENST00000217173		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000378058	ENST00000348031		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000378058	ENST00000217173		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000407045	ENST00000348031		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
intron-5UTR	ENST00000407045	ENST00000217173		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MACROD2	chr20	13983050	+	UBOX5	chr20	3104052	-
Frame-shit	ENST00000348428	ENST00000261592		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000348428	ENST00000269185		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000348428	ENST00000535384		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000348428	ENST00000535475		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000348428	ENST00000589544		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
In-frame	ENST00000348428	ENST00000538587		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
5CDS-intron	ENST00000348428	ENST00000590846		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000345724	ENST00000261592		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000345724	ENST00000269185		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000345724	ENST00000535384		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000345724	ENST00000535475		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000345724	ENST00000589544		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
In-frame	ENST00000345724	ENST00000538587		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
5CDS-intron	ENST00000345724	ENST00000590846		TCGA	RV	LUSC	TCGA-77-8131-01A	MALT1	chr18	56367823	+	NOL4	chr18	31432999	-
Frame-shit	ENST00000369705	ENST00000521485		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000369694		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000195649		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000439399		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000428679		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000437520		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000521743		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000520302		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000520213		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
5CDS-intron	ENST00000369705	ENST00000519133		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000521485		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000369694		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000195649		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000439399		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000428679		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000437520		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000521743		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000520302		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000541327	ENST00000520213		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-intron	ENST00000541327	ENST00000519133		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000521485		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000369694		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000195649		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000439399		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000428679		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000437520		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000521743		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000520302		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-3CDS	ENST00000543031	ENST00000520213		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
intron-intron	ENST00000543031	ENST00000519133		TCGA	RV	LUSC	TCGA-18-3419-01A	ME1	chr6	84117487	-	SNAP91	chr6	84350921	-
5CDS-5UTR	ENST00000394287	ENST00000255559		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000394287	ENST00000542342		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000394287	ENST00000579988		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000394287	ENST00000579732		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000300651	ENST00000255559		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000300651	ENST00000542342		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
intron-intron	ENST00000300651	ENST00000579988		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000300651	ENST00000579732		TCGA	RV	LUSC	TCGA-58-8393-01A	MED1	chr17	37566834	-	SLC39A11	chr17	71084914	-
intron-3CDS	ENST00000319888	ENST00000273666		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
intron-3CDS	ENST00000319888	ENST00000471454		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
intron-3CDS	ENST00000319888	ENST00000472879		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
intron-3CDS	ENST00000319888	ENST00000497029		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
intron-3CDS	ENST00000319888	ENST00000492541		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
In-frame	ENST00000574538	ENST00000273666		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
In-frame	ENST00000574538	ENST00000471454		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
In-frame	ENST00000574538	ENST00000472879		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
In-frame	ENST00000574538	ENST00000497029		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
In-frame	ENST00000574538	ENST00000492541		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	METTL4	chr18	2544194	-	STXBP5L	chr3	120941850	+
5UTR-5UTR	ENST00000549405	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000549405	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000549405	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000549405	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000549405	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
intron-5UTR	ENST00000393205	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
intron-5UTR	ENST00000393205	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
intron-5UTR	ENST00000393205	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
intron-5UTR	ENST00000393205	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
intron-intron	ENST00000393205	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000332156	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000332156	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000332156	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000332156	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000332156	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000604798	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000604798	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000604798	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000604798	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000604798	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552808	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552808	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552808	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552808	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000552808	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000548651	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000548651	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000548651	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000548651	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000548651	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552435	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552435	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552435	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000552435	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000552435	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000602941	ENST00000356327		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000602941	ENST00000351298		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000602941	ENST00000342215		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-5UTR	ENST00000602941	ENST00000340989		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
5UTR-intron	ENST00000602941	ENST00000497307		TCGA	RV	LUSC	TCGA-46-6026-01A	MGAT4C	chr12	86443452	-	PLD1	chr3	171455872	-
Frame-shit	ENST00000371996	ENST00000435504		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-5UTR	ENST00000371996	ENST00000336112		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-5UTR	ENST00000371996	ENST00000272341		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-intron	ENST00000371996	ENST00000404843		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-intron	ENST00000371996	ENST00000497092		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
Frame-shit	ENST00000371994	ENST00000435504		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-5UTR	ENST00000371994	ENST00000336112		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-5UTR	ENST00000371994	ENST00000272341		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-intron	ENST00000371994	ENST00000404843		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-intron	ENST00000371994	ENST00000497092		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
Frame-shit	ENST00000536010	ENST00000435504		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-5UTR	ENST00000536010	ENST00000336112		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-5UTR	ENST00000536010	ENST00000272341		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-intron	ENST00000536010	ENST00000404843		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
5CDS-intron	ENST00000536010	ENST00000497092		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
intron-3CDS	ENST00000472891	ENST00000435504		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
intron-5UTR	ENST00000472891	ENST00000336112		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
intron-5UTR	ENST00000472891	ENST00000272341		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
intron-intron	ENST00000472891	ENST00000404843		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
intron-intron	ENST00000472891	ENST00000497092		TCGA	RV	LUSC	TCGA-90-7769-01A	MINPP1	chr10	89268290	+	ASXL2	chr2	26068432	-
In-frame	ENST00000344191	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000344191	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000344191	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000351017	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000351017	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000351017	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000392108	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000392108	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000392108	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000392112	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000392112	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000392112	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000366806	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000366806	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000366806	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000447894	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000447894	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000447894	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000400822	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
In-frame	ENST00000400822	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-intron	ENST00000400822	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000507679	ENST00000530927		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
intron-3CDS	ENST00000507679	ENST00000380815		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
intron-intron	ENST00000507679	ENST00000467288		TCGA	RV	LUSC	TCGA-98-8023-01A	MLLT4	chr6	168227917	+	GMDS	chr6	1742820	-
5CDS-5UTR	ENST00000355192	ENST00000589718		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-5UTR	ENST00000355192	ENST00000586576		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-3UTR	ENST00000355192	ENST00000484949		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000355192	ENST00000308721		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000355192	ENST00000396367		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000355192	ENST00000266434		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000355192	ENST00000396369		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-5UTR	ENST00000308259	ENST00000589718		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-5UTR	ENST00000308259	ENST00000586576		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-3UTR	ENST00000308259	ENST00000484949		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000308259	ENST00000308721		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000308259	ENST00000396367		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000308259	ENST00000266434		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000308259	ENST00000396369		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-5UTR	ENST00000540804	ENST00000589718		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-5UTR	ENST00000540804	ENST00000586576		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-3UTR	ENST00000540804	ENST00000484949		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000540804	ENST00000308721		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000540804	ENST00000396367		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000540804	ENST00000266434		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-intron	ENST00000540804	ENST00000396369		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-5UTR	ENST00000535664	ENST00000589718		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-5UTR	ENST00000535664	ENST00000586576		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-3UTR	ENST00000535664	ENST00000484949		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000535664	ENST00000308721		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000535664	ENST00000396367		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000535664	ENST00000266434		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5UTR-intron	ENST00000535664	ENST00000396369		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-5UTR	ENST00000538725	ENST00000589718		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-5UTR	ENST00000538725	ENST00000586576		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-3UTR	ENST00000538725	ENST00000484949		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-intron	ENST00000538725	ENST00000308721		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-intron	ENST00000538725	ENST00000396367		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-intron	ENST00000538725	ENST00000266434		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
3UTR-intron	ENST00000538725	ENST00000396369		TCGA	RV	LUSC	TCGA-85-6175-01A	MSRB3	chr12	65672645	+	BCL2L14	chr12	12204730	+
5CDS-5UTR	ENST00000381556	ENST00000575235		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000381556	ENST00000293829		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000381556	ENST00000572907		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000381556	ENST00000575398		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000381556	ENST00000575082		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000254718	ENST00000575235		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000254718	ENST00000293829		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000254718	ENST00000572907		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000254718	ENST00000575398		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
5CDS-5UTR	ENST00000254718	ENST00000575082		TCGA	RV	LUSC	TCGA-85-A4CN-01A	MYBBP1A	chr17	4451253	-	FGF11	chr17	7344790	+
Frame-shit	ENST00000285039	ENST00000585672		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000382948		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000353909		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000591416		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000339998		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000349085		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000269468		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000347968		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000269471		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000436910		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000590208		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000587605		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000588937		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000424334		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000585595		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000398495		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000457839		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000398493		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000591535		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000285039	ENST00000398488		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000585672		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000382948		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000353909		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000591416		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000339998		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000349085		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000269468		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000347968		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000269471		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000436910		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000590208		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000587605		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000588937		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000424334		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000585595		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000398495		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000457839		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000398493		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000591535		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000324581	ENST00000398488		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000585672		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000382948		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000353909		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000591416		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000339998		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000349085		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000269468		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000347968		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000269471		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000436910		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000590208		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000587605		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000588937		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000424334		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000585595		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000398495		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000457839		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000398493		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000591535		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000592688	ENST00000398488		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000585672		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000382948		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000353909		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000591416		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000339998		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000349085		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000269468		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000347968		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000269471		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000436910		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000590208		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000587605		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000588937		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000424334		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000585595		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000398495		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000457839		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000398493		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000591535		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
intron-3CDS	ENST00000587895	ENST00000398488		TCGA	RV	LUSC	TCGA-77-8140-01A	MYO5B	chr18	47721137	-	MBD1	chr18	47803574	-
Frame-shit	ENST00000454872	ENST00000361138		TCGA	RV	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174577240	+	SMC5	chr9	72959060	+
5CDS-intron	ENST00000454872	ENST00000471372		TCGA	RV	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174577240	+	SMC5	chr9	72959060	+
intron-3CDS	ENST00000473253	ENST00000361138		TCGA	RV	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174577240	+	SMC5	chr9	72959060	+
intron-intron	ENST00000473253	ENST00000471372		TCGA	RV	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174577240	+	SMC5	chr9	72959060	+
In-frame	ENST00000523767	ENST00000451292		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000377797		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000445265		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000323668		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000439160		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000394269		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000504761		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000523767	ENST00000513346		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
5CDS-intron	ENST00000523767	ENST00000506063		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000451292		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000377797		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000445265		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000323668		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000439160		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000394269		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000504761		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
In-frame	ENST00000261797	ENST00000513346		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
5CDS-intron	ENST00000261797	ENST00000506063		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000451292		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000377797		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000445265		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000323668		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000439160		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000394269		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000504761		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-3CDS	ENST00000521752	ENST00000513346		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
intron-intron	ENST00000521752	ENST00000506063		TCGA	RV	LUSC	TCGA-33-4566-01A	NDST1	chr5	149901329	+	TCOF1	chr5	149753737	+
5UTR-3CDS	ENST00000349945	ENST00000268802		TCGA	RV	LUSC	TCGA-43-A56V-01A	NFAT5	chr16	69602451	+	NOB1	chr16	69788629	-
Frame-shit	ENST00000432919	ENST00000268802		TCGA	RV	LUSC	TCGA-43-A56V-01A	NFAT5	chr16	69602451	+	NOB1	chr16	69788629	-
intron-3CDS	ENST00000354436	ENST00000268802		TCGA	RV	LUSC	TCGA-43-A56V-01A	NFAT5	chr16	69602451	+	NOB1	chr16	69788629	-
Frame-shit	ENST00000567239	ENST00000268802		TCGA	RV	LUSC	TCGA-43-A56V-01A	NFAT5	chr16	69602451	+	NOB1	chr16	69788629	-
intron-3CDS	ENST00000393742	ENST00000268802		TCGA	RV	LUSC	TCGA-43-A56V-01A	NFAT5	chr16	69602451	+	NOB1	chr16	69788629	-
intron-3CDS	ENST00000566899	ENST00000268802		TCGA	RV	LUSC	TCGA-43-A56V-01A	NFAT5	chr16	69602451	+	NOB1	chr16	69788629	-
5CDS-5UTR	ENST00000397661	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000397661	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000397661	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000397661	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000397661	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000592199	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000592199	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000592199	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000592199	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000592199	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587760	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587760	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587760	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587760	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000587760	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000585575	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000585575	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000585575	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000585575	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000585575	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000360105	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000360105	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000360105	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000360105	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000360105	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000588228	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000588228	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000588228	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000588228	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000588228	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587260	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587260	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587260	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000587260	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000587260	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000358552	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000358552	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000358552	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000358552	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-intron	ENST00000358552	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
intron-5UTR	ENST00000588680	ENST00000222214		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
intron-5UTR	ENST00000588680	ENST00000591470		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
intron-5UTR	ENST00000588680	ENST00000457854		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
intron-5UTR	ENST00000588680	ENST00000422947		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
intron-intron	ENST00000588680	ENST00000588242		TCGA	RV	LUSC	TCGA-94-8491-01A	NFIX	chr19	13136366	+	GCDH	chr19	13002085	+
5CDS-5UTR	ENST00000554546	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554546	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554546	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554546	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000356296	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000356296	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000356296	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000356296	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000557597	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000557597	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000557597	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000557597	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555238	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555238	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555238	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555238	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000355058	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000355058	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000355058	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000355058	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000359560	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000359560	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000359560	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000359560	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555394	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555394	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555394	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555394	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000454166	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000454166	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000454166	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000454166	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000544991	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000544991	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000544991	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000544991	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000560335	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000560335	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000560335	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000560335	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555738	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555738	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555738	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000555738	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000559312	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000559312	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000559312	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000559312	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554521	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554521	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554521	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000554521	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000535282	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000535282	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000535282	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000535282	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556600	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556600	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556600	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556600	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556772	ENST00000531499		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556772	ENST00000535815		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556772	ENST00000238699		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
intron-5UTR	ENST00000556772	ENST00000529300		TCGA	RV	LUSC	TCGA-39-5031-01A	NUMB	chr14	73822334	-	GPR68	chr14	91701523	-
In-frame	ENST00000245544	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
In-frame	ENST00000245544	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
In-frame	ENST00000245544	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000541827	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000541827	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000541827	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000579324	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000579324	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000579324	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
3UTR-3CDS	ENST00000449421	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
3UTR-3CDS	ENST00000449421	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
3UTR-3CDS	ENST00000449421	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
In-frame	ENST00000579298	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
In-frame	ENST00000579298	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
In-frame	ENST00000579298	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000447371	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000447371	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
5UTR-3CDS	ENST00000447371	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
intron-3CDS	ENST00000540768	ENST00000367362		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
intron-3CDS	ENST00000540768	ENST00000236914		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
intron-3CDS	ENST00000540768	ENST00000544748		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	NUP85	chr17	73201889	+	NR5A2	chr1	200080330	+
In-frame	ENST00000361828	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361828	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-5UTR	ENST00000361828	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-intron	ENST00000361828	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361510	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361510	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-5UTR	ENST00000361510	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-intron	ENST00000361510	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361150	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361150	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-5UTR	ENST00000361150	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-intron	ENST00000361150	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361715	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361715	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-5UTR	ENST00000361715	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-intron	ENST00000361715	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361908	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000361908	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-5UTR	ENST00000361908	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-intron	ENST00000361908	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000392438	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
In-frame	ENST00000392438	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-5UTR	ENST00000392438	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5CDS-intron	ENST00000392438	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
intron-3CDS	ENST00000487986	ENST00000231887		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
intron-3CDS	ENST00000487986	ENST00000456310		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
intron-5UTR	ENST00000487986	ENST00000475987		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
intron-intron	ENST00000487986	ENST00000440662		TCGA	RV	LUSC	TCGA-NC-A5HO-01A	OPA1	chr3	193361894	+	EHHADH	chr3	184947331	-
5UTR-3CDS	ENST00000220597	ENST00000376261		TCGA	RV	LUSC	TCGA-51-6867-01A	PAG1	chr8	81942231	-	GAD2	chr10	26562565	+
5UTR-3CDS	ENST00000220597	ENST00000259271		TCGA	RV	LUSC	TCGA-51-6867-01A	PAG1	chr8	81942231	-	GAD2	chr10	26562565	+
5UTR-intron	ENST00000220597	ENST00000376248		TCGA	RV	LUSC	TCGA-51-6867-01A	PAG1	chr8	81942231	-	GAD2	chr10	26562565	+
intron-3CDS	ENST00000523463	ENST00000376261		TCGA	RV	LUSC	TCGA-51-6867-01A	PAG1	chr8	81942231	-	GAD2	chr10	26562565	+
intron-3CDS	ENST00000523463	ENST00000259271		TCGA	RV	LUSC	TCGA-51-6867-01A	PAG1	chr8	81942231	-	GAD2	chr10	26562565	+
intron-intron	ENST00000523463	ENST00000376248		TCGA	RV	LUSC	TCGA-51-6867-01A	PAG1	chr8	81942231	-	GAD2	chr10	26562565	+
intron-3UTR	ENST00000340635	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000340635	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000360047	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000360047	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000507116	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000507116	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
5UTR-3UTR	ENST00000502484	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
5UTR-3UTR	ENST00000502484	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000546160	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000546160	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000502575	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000502575	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000358923	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000358923	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000503258	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000503258	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000405755	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000405755	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000317118	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000317118	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000503947	ENST00000508162		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
intron-3UTR	ENST00000503947	ENST00000334025		TCGA	RV	LUSC	TCGA-66-2778-01A	PDE4D	chr5	59783769	-	RGS7BP	chr5	63871601	+
In-frame	ENST00000267460	ENST00000298097		TCGA	RV	LUSC	TCGA-43-8115-01A	PELI2	chr14	56585455	+	FBXO33	chr14	39871715	-
5CDS-intron	ENST00000267460	ENST00000554190		TCGA	RV	LUSC	TCGA-43-8115-01A	PELI2	chr14	56585455	+	FBXO33	chr14	39871715	-
Frame-shit	ENST00000438045	ENST00000356239		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000438045	ENST00000358100		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000438045	ENST00000359028		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
5CDS-intron	ENST00000438045	ENST00000394564		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
5CDS-intron	ENST00000438045	ENST00000491695		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000248633	ENST00000356239		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000248633	ENST00000358100		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000248633	ENST00000359028		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
5CDS-intron	ENST00000248633	ENST00000394564		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
5CDS-intron	ENST00000248633	ENST00000491695		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000428214	ENST00000356239		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000428214	ENST00000358100		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
Frame-shit	ENST00000428214	ENST00000359028		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
5CDS-intron	ENST00000428214	ENST00000394564		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
5CDS-intron	ENST00000428214	ENST00000491695		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
intron-3CDS	ENST00000541751	ENST00000356239		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
intron-3CDS	ENST00000541751	ENST00000358100		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
intron-3CDS	ENST00000541751	ENST00000359028		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
intron-intron	ENST00000541751	ENST00000394564		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
intron-intron	ENST00000541751	ENST00000491695		TCGA	RV	LUSC	TCGA-43-7658-01A	PEX1	chr7	92120586	-	AKAP9	chr7	91682040	+
intron-5UTR	ENST00000257821	ENST00000298834		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000257821	ENST00000426438		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000257821	ENST00000314845		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000257821	ENST00000533727		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000257821	ENST00000534300		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000257821	ENST00000458649		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000257821	ENST00000528950		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000257821	ENST00000529963		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000323180	ENST00000298834		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000323180	ENST00000426438		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000323180	ENST00000314845		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000323180	ENST00000533727		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000323180	ENST00000534300		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000323180	ENST00000458649		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000323180	ENST00000528950		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000323180	ENST00000529963		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000418153	ENST00000298834		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000418153	ENST00000426438		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000418153	ENST00000314845		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000418153	ENST00000533727		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000418153	ENST00000534300		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000418153	ENST00000458649		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000418153	ENST00000528950		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000418153	ENST00000529963		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000527753	ENST00000298834		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000527753	ENST00000426438		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000527753	ENST00000314845		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000527753	ENST00000533727		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000527753	ENST00000534300		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000527753	ENST00000458649		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000527753	ENST00000528950		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
intron-intron	ENST00000527753	ENST00000529963		TCGA	RV	LUSC	TCGA-L3-A524-01A	PHF21A	chr11	46139473	-	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000326291	ENST00000525729		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
5CDS-intron	ENST00000326291	ENST00000526725		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
5CDS-intron	ENST00000326291	ENST00000529391		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
5CDS-intron	ENST00000326291	ENST00000393084		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
intron-intron	ENST00000489922	ENST00000525729		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
intron-intron	ENST00000489922	ENST00000526725		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
intron-intron	ENST00000489922	ENST00000529391		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
intron-intron	ENST00000489922	ENST00000393084		TCGA	RV	LUSC	TCGA-21-1082-01A	PIBF1	chr13	73491304	+	C11orf65	chr11	108302565	-
5CDS-5UTR	ENST00000409426	ENST00000342228		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000409426	ENST00000520262		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000409426	ENST00000520179		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-intron	ENST00000409426	ENST00000523340		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000441902	ENST00000342228		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000441902	ENST00000520262		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000441902	ENST00000520179		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-intron	ENST00000441902	ENST00000523340		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000368890	ENST00000342228		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000368890	ENST00000520262		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000368890	ENST00000520179		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-intron	ENST00000368890	ENST00000523340		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000368888	ENST00000342228		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000368888	ENST00000520262		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-5UTR	ENST00000368888	ENST00000520179		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
5CDS-intron	ENST00000368888	ENST00000523340		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000464105	ENST00000342228		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000464105	ENST00000520262		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000464105	ENST00000520179		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-intron	ENST00000464105	ENST00000523340		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000414290	ENST00000342228		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000414290	ENST00000520262		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-5UTR	ENST00000414290	ENST00000520179		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
intron-intron	ENST00000414290	ENST00000523340		TCGA	RV	LUSC	TCGA-66-2754-01A	PIP5K1A	chr1	151171557	+	SLC20A2	chr8	42330172	-
Frame-shit	ENST00000320201	ENST00000259154		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5CDS-3UTR	ENST00000320201	ENST00000495537		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
Frame-shit	ENST00000392428	ENST00000259154		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5CDS-3UTR	ENST00000392428	ENST00000495537		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
Frame-shit	ENST00000280562	ENST00000259154		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5CDS-3UTR	ENST00000280562	ENST00000495537		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
Frame-shit	ENST00000542749	ENST00000259154		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5CDS-3UTR	ENST00000542749	ENST00000495537		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
Frame-shit	ENST00000546049	ENST00000259154		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5CDS-3UTR	ENST00000546049	ENST00000495537		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5UTR-3CDS	ENST00000451868	ENST00000259154		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5UTR-3UTR	ENST00000451868	ENST00000495537		TCGA	RV	LUSC	TCGA-98-8021-01A	PITPNM2	chr12	123519060	-	KCTD3	chr1	215792228	+
5UTR-5UTR	ENST00000356327	ENST00000415807		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000356327	ENST00000336824		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000356327	ENST00000416957		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000356327	ENST00000392699		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000356327	ENST00000421757		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000356327	ENST00000423424		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-intron	ENST00000356327	ENST00000476794		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000351298	ENST00000415807		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000351298	ENST00000336824		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000351298	ENST00000416957		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000351298	ENST00000392699		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000351298	ENST00000421757		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000351298	ENST00000423424		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-intron	ENST00000351298	ENST00000476794		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000342215	ENST00000415807		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000342215	ENST00000336824		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000342215	ENST00000416957		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000342215	ENST00000392699		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000342215	ENST00000421757		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000342215	ENST00000423424		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-intron	ENST00000342215	ENST00000476794		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000340989	ENST00000415807		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000340989	ENST00000336824		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000340989	ENST00000416957		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000340989	ENST00000392699		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000340989	ENST00000421757		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000340989	ENST00000423424		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-intron	ENST00000340989	ENST00000476794		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000497307	ENST00000415807		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000497307	ENST00000336824		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000497307	ENST00000416957		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000497307	ENST00000392699		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000497307	ENST00000421757		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-5UTR	ENST00000497307	ENST00000423424		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
5UTR-intron	ENST00000497307	ENST00000476794		TCGA	RV	LUSC	TCGA-63-A5MP-01A	PLD1	chr3	171528189	-	FNDC3B	chr3	171830242	+
In-frame	ENST00000608999	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000608999	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-intron	ENST00000608999	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-3UTR	ENST00000608999	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000336894	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000336894	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-intron	ENST00000336894	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-3UTR	ENST00000336894	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000480184	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000480184	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-intron	ENST00000480184	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-3UTR	ENST00000480184	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000356764	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
In-frame	ENST00000356764	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-intron	ENST00000356764	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5CDS-3UTR	ENST00000356764	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3CDS	ENST00000290419	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3CDS	ENST00000290419	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-intron	ENST00000290419	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3UTR	ENST00000290419	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3CDS	ENST00000391959	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3CDS	ENST00000391959	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-intron	ENST00000391959	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3UTR	ENST00000391959	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3CDS	ENST00000367270	ENST00000367278		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3CDS	ENST00000367270	ENST00000255432		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-intron	ENST00000367270	ENST00000439764		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
intron-3UTR	ENST00000367270	ENST00000308543		TCGA	RV	LUSC	TCGA-37-4130-01A	PPP1R12B	chr1	202386045	+	LGR6	chr1	202245434	+
5UTR-3CDS	ENST00000510594	ENST00000503335		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
5UTR-intron	ENST00000510594	ENST00000508365		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
5UTR-intron	ENST00000510594	ENST00000418761		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
5UTR-intron	ENST00000510594	ENST00000274473		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
5UTR-intron	ENST00000510594	ENST00000510828		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-3CDS	ENST00000334744	ENST00000503335		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000334744	ENST00000508365		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000334744	ENST00000418761		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000334744	ENST00000274473		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000334744	ENST00000510828		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-3CDS	ENST00000358004	ENST00000503335		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000358004	ENST00000508365		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000358004	ENST00000418761		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000358004	ENST00000274473		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000358004	ENST00000510828		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-3CDS	ENST00000394450	ENST00000503335		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000394450	ENST00000508365		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000394450	ENST00000418761		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000394450	ENST00000274473		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000394450	ENST00000510828		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-3CDS	ENST00000505416	ENST00000503335		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000505416	ENST00000508365		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000505416	ENST00000418761		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000505416	ENST00000274473		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
3UTR-intron	ENST00000505416	ENST00000510828		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
intron-3CDS	ENST00000511435	ENST00000503335		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
intron-intron	ENST00000511435	ENST00000508365		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
intron-intron	ENST00000511435	ENST00000418761		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
intron-intron	ENST00000511435	ENST00000274473		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
intron-intron	ENST00000511435	ENST00000510828		TCGA	RV	LUSC	TCGA-77-A5GA-01A	PRELID2	chr5	145144494	-	MEGF10	chr5	126769055	+
Frame-shit	ENST00000275262	ENST00000337019		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000275262	ENST00000366889		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000275262	ENST00000366888		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000275262	ENST00000542669		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000392127	ENST00000337019		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000392127	ENST00000366889		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000392127	ENST00000366888		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000392127	ENST00000542669		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000453779	ENST00000337019		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000453779	ENST00000366889		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000453779	ENST00000366888		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000453779	ENST00000542669		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361752	ENST00000337019		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361752	ENST00000366889		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361752	ENST00000366888		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361752	ENST00000542669		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361195	ENST00000337019		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361195	ENST00000366889		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000361195	ENST00000366888		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000361195	ENST00000542669		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000424802	ENST00000337019		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000424802	ENST00000366889		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000424802	ENST00000366888		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000424802	ENST00000542669		TCGA	RV	LUSC	TCGA-33-6738-01A	QKI	chr6	163836367	+	PACRG	chr6	163483182	+
5CDS-5UTR	ENST00000358951	ENST00000367385		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
5CDS-5UTR	ENST00000358951	ENST00000538004		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
5CDS-5UTR	ENST00000358951	ENST00000367383		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
5CDS-3UTR	ENST00000358951	ENST00000417895		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
intron-5UTR	ENST00000462353	ENST00000367385		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
intron-5UTR	ENST00000462353	ENST00000538004		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
intron-5UTR	ENST00000462353	ENST00000367383		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
intron-3UTR	ENST00000462353	ENST00000417895		TCGA	RV	LUSC	TCGA-94-8491-01A	RAB3GAP2	chr1	220406141	-	NEK7	chr1	198201683	+
In-frame	ENST00000452898	ENST00000310546		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	RASA2	chr3	141259451	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000452898	ENST00000507895		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	RASA2	chr3	141259451	+	SPSB4	chr3	140865984	+
In-frame	ENST00000286364	ENST00000310546		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	RASA2	chr3	141259451	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000286364	ENST00000507895		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	RASA2	chr3	141259451	+	SPSB4	chr3	140865984	+
intron-3CDS	ENST00000509118	ENST00000310546		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	RASA2	chr3	141259451	+	SPSB4	chr3	140865984	+
intron-3UTR	ENST00000509118	ENST00000507895		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	RASA2	chr3	141259451	+	SPSB4	chr3	140865984	+
5CDS-5UTR	ENST00000448150	ENST00000539888		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-intron	ENST00000448150	ENST00000535686		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-intron	ENST00000448150	ENST00000540564		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-intron	ENST00000448150	ENST00000367619		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-5UTR	ENST00000367649	ENST00000539888		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-intron	ENST00000367649	ENST00000535686		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-intron	ENST00000367649	ENST00000540564		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
5CDS-intron	ENST00000367649	ENST00000367619		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-5UTR	ENST00000465723	ENST00000539888		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-intron	ENST00000465723	ENST00000535686		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-intron	ENST00000465723	ENST00000540564		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-intron	ENST00000465723	ENST00000367619		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-5UTR	ENST00000462775	ENST00000539888		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-intron	ENST00000462775	ENST00000535686		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-intron	ENST00000462775	ENST00000540564		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
intron-intron	ENST00000462775	ENST00000367619		TCGA	RV	LUSC	TCGA-77-8139-01A	RASAL2	chr1	178063829	+	SOAT1	chr1	179292572	+
Frame-shit	ENST00000216487	ENST00000389857		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
5CDS-intron	ENST00000216487	ENST00000331194		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
5CDS-intron	ENST00000216487	ENST00000389856		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
5CDS-intron	ENST00000216487	ENST00000553403		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
5CDS-intron	ENST00000216487	ENST00000554165		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
3UTR-3CDS	ENST00000418924	ENST00000389857		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
3UTR-intron	ENST00000418924	ENST00000331194		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
3UTR-intron	ENST00000418924	ENST00000389856		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
3UTR-intron	ENST00000418924	ENST00000553403		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
3UTR-intron	ENST00000418924	ENST00000554165		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
intron-3CDS	ENST00000557762	ENST00000389857		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
intron-intron	ENST00000557762	ENST00000331194		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
intron-intron	ENST00000557762	ENST00000389856		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
intron-intron	ENST00000557762	ENST00000553403		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
intron-intron	ENST00000557762	ENST00000554165		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RIN3	chr14	93081824	+	CCDC88C	chr14	91826055	-
Frame-shit	ENST00000443572	ENST00000321562		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
5CDS-intron	ENST00000443572	ENST00000544340		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
Frame-shit	ENST00000406116	ENST00000321562		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
5CDS-intron	ENST00000406116	ENST00000544340		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
Frame-shit	ENST00000225577	ENST00000321562		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
5CDS-intron	ENST00000225577	ENST00000544340		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
5UTR-3CDS	ENST00000393021	ENST00000321562		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
5UTR-intron	ENST00000393021	ENST00000544340		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
intron-3CDS	ENST00000587061	ENST00000321562		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
intron-intron	ENST00000587061	ENST00000544340		TCGA	RV	LUSC	TCGA-85-8580-01A	RPS6KB1	chr17	57970686	+	FKBP10	chr17	39974341	+
intron-intron	ENST00000537330	ENST00000299341		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000537330	ENST00000376352		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000537330	ENST00000405898		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000537330	ENST00000434978		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000537330	ENST00000398391		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000570891	ENST00000299341		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000570891	ENST00000376352		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000570891	ENST00000405898		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000570891	ENST00000434978		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
intron-intron	ENST00000570891	ENST00000398391		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000306801	ENST00000299341		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000306801	ENST00000376352		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000306801	ENST00000405898		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000306801	ENST00000434978		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000306801	ENST00000398391		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000544334	ENST00000299341		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000544334	ENST00000376352		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000544334	ENST00000405898		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000544334	ENST00000434978		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
5CDS-intron	ENST00000544334	ENST00000398391		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
3UTR-intron	ENST00000575542	ENST00000299341		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
3UTR-intron	ENST00000575542	ENST00000376352		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
3UTR-intron	ENST00000575542	ENST00000405898		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
3UTR-intron	ENST00000575542	ENST00000434978		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
3UTR-intron	ENST00000575542	ENST00000398391		TCGA	RV	LUSC	TCGA-66-2788-01A	RPTOR	chr17	78882729	+	STXBP4	chr17	53155439	+
Frame-shit	ENST00000308488	ENST00000534064		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-intron	ENST00000308488	ENST00000535943		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-5UTR	ENST00000308488	ENST00000525931		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-5UTR	ENST00000308488	ENST00000529807		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-intron	ENST00000308488	ENST00000527522		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
Frame-shit	ENST00000360355	ENST00000534064		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-intron	ENST00000360355	ENST00000535943		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-5UTR	ENST00000360355	ENST00000525931		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-5UTR	ENST00000360355	ENST00000529807		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5CDS-intron	ENST00000360355	ENST00000527522		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
intron-3CDS	ENST00000480887	ENST00000534064		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
intron-intron	ENST00000480887	ENST00000535943		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
intron-5UTR	ENST00000480887	ENST00000525931		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
intron-5UTR	ENST00000480887	ENST00000529807		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
intron-intron	ENST00000480887	ENST00000527522		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5UTR-3CDS	ENST00000530604	ENST00000534064		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5UTR-intron	ENST00000530604	ENST00000535943		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5UTR-5UTR	ENST00000530604	ENST00000525931		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5UTR-5UTR	ENST00000530604	ENST00000529807		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
5UTR-intron	ENST00000530604	ENST00000527522		TCGA	RV	LUSC	TCGA-60-2726-01A	RSF1	chr11	77531574	-	INTS4	chr11	77639593	-
intron-intron	ENST00000550067	ENST00000549100		TCGA	RV	LUSC	TCGA-85-7710-01A	SCYL2	chr12	100691953	+	DEPDC4	chr12	100650004	-
intron-intron	ENST00000550067	ENST00000416321		TCGA	RV	LUSC	TCGA-85-7710-01A	SCYL2	chr12	100691953	+	DEPDC4	chr12	100650004	-
5CDS-intron	ENST00000360820	ENST00000549100		TCGA	RV	LUSC	TCGA-85-7710-01A	SCYL2	chr12	100691953	+	DEPDC4	chr12	100650004	-
5CDS-intron	ENST00000360820	ENST00000416321		TCGA	RV	LUSC	TCGA-85-7710-01A	SCYL2	chr12	100691953	+	DEPDC4	chr12	100650004	-
Frame-shit	ENST00000313050	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
5CDS-intron	ENST00000313050	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
intron-3CDS	ENST00000467838	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
intron-intron	ENST00000467838	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
Frame-shit	ENST00000371706	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
5CDS-intron	ENST00000371706	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
intron-3CDS	ENST00000313084	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
intron-intron	ENST00000313084	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
Frame-shit	ENST00000290037	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
5CDS-intron	ENST00000290037	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
Frame-shit	ENST00000431893	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
5CDS-intron	ENST00000431893	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
intron-3CDS	ENST00000398335	ENST00000277541		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
intron-intron	ENST00000398335	ENST00000491649		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	SEC16A	chr9	139353586	-	NOTCH1	chr9	139418431	-
In-frame	ENST00000262544	ENST00000320005		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
5CDS-5UTR	ENST00000262544	ENST00000519777		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
In-frame	ENST00000336714	ENST00000320005		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
5CDS-5UTR	ENST00000336714	ENST00000519777		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
In-frame	ENST00000377475	ENST00000320005		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
5CDS-5UTR	ENST00000377475	ENST00000519777		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
In-frame	ENST00000377465	ENST00000320005		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
5CDS-5UTR	ENST00000377465	ENST00000519777		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
intron-3CDS	ENST00000494645	ENST00000320005		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
intron-5UTR	ENST00000494645	ENST00000519777		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SEC23B	chr20	18516386	+	CNGB3	chr8	87751964	-
Frame-shit	ENST00000284136	ENST00000399881		TCGA	RV	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84727121	-	KCNU1	chr8	36721922	+
5CDS-intron	ENST00000284136	ENST00000518904		TCGA	RV	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84727121	-	KCNU1	chr8	36721922	+
Frame-shit	ENST00000444867	ENST00000399881		TCGA	RV	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84727121	-	KCNU1	chr8	36721922	+
5CDS-intron	ENST00000444867	ENST00000518904		TCGA	RV	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84727121	-	KCNU1	chr8	36721922	+
intron-3CDS	ENST00000484038	ENST00000399881		TCGA	RV	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84727121	-	KCNU1	chr8	36721922	+
intron-intron	ENST00000484038	ENST00000518904		TCGA	RV	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84727121	-	KCNU1	chr8	36721922	+
intron-3CDS	ENST00000373710	ENST00000344147		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000373710	ENST00000479629		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000373710	ENST00000373714		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000373710	ENST00000546109		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000373710	ENST00000422613		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-3CDS	ENST00000536859	ENST00000344147		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536859	ENST00000479629		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536859	ENST00000373714		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536859	ENST00000546109		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536859	ENST00000422613		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
Frame-shit	ENST00000373709	ENST00000344147		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000479629		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000373714		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000546109		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000422613		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-3CDS	ENST00000536384	ENST00000344147		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536384	ENST00000479629		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536384	ENST00000373714		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536384	ENST00000546109		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000536384	ENST00000422613		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-3CDS	ENST00000491976	ENST00000344147		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000491976	ENST00000479629		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000491976	ENST00000373714		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000491976	ENST00000546109		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
intron-intron	ENST00000491976	ENST00000422613		TCGA	RV	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836879	+
Frame-shit	ENST00000359120	ENST00000353963		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
Frame-shit	ENST00000359120	ENST00000348729		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
5CDS-intron	ENST00000359120	ENST00000503919		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
Frame-shit	ENST00000511217	ENST00000353963		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
Frame-shit	ENST00000511217	ENST00000348729		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
5CDS-intron	ENST00000511217	ENST00000503919		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
intron-3CDS	ENST00000511705	ENST00000353963		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
intron-3CDS	ENST00000511705	ENST00000348729		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
intron-intron	ENST00000511705	ENST00000503919		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	SH3RF2	chr5	145317869	+	SLC23A1	chr5	138707942	-
In-frame	ENST00000265113	ENST00000504376		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
In-frame	ENST00000265113	ENST00000382254		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
In-frame	ENST00000265113	ENST00000522262		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
5CDS-5UTR	ENST00000265113	ENST00000521384		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
3UTR-3CDS	ENST00000506725	ENST00000504376		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
3UTR-3CDS	ENST00000506725	ENST00000382254		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
3UTR-3CDS	ENST00000506725	ENST00000522262		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
3UTR-5UTR	ENST00000506725	ENST00000521384		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
In-frame	ENST00000381918	ENST00000504376		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
In-frame	ENST00000381918	ENST00000382254		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
In-frame	ENST00000381918	ENST00000522262		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
5CDS-5UTR	ENST00000381918	ENST00000521384		TCGA	RV	LUSC	TCGA-21-A5DI-01A	SLC1A3	chr5	36608706	+	CDH12	chr5	21765208	-
Frame-shit	ENST00000240095	ENST00000356766		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000240095	ENST00000521356		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000240095	ENST00000454009		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
intron-3CDS	ENST00000359741	ENST00000356766		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
intron-3CDS	ENST00000359741	ENST00000521356		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
intron-3CDS	ENST00000359741	ENST00000454009		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000381237	ENST00000356766		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000381237	ENST00000521356		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000381237	ENST00000454009		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000289952	ENST00000356766		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000289952	ENST00000521356		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
Frame-shit	ENST00000289952	ENST00000454009		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SLC39A14	chr8	22269719	+	PIWIL2	chr8	22161534	+
In-frame	ENST00000446120	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000446120	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000446120	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000446120	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000446120	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5CDS-intron	ENST00000446120	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000271227	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000271227	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000271227	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000271227	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000271227	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5CDS-intron	ENST00000271227	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000527077	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000527077	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000527077	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000527077	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000527077	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5CDS-intron	ENST00000527077	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000529450	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000529450	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000529450	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000529450	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000529450	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5CDS-intron	ENST00000529450	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000467909	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000467909	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000467909	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000467909	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000467909	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5CDS-intron	ENST00000467909	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000532427	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000532427	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000532427	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000532427	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
In-frame	ENST00000532427	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5CDS-intron	ENST00000532427	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
3UTR-3CDS	ENST00000530397	ENST00000394233		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
3UTR-3CDS	ENST00000530397	ENST00000454898		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
3UTR-3CDS	ENST00000530397	ENST00000536817		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
3UTR-3CDS	ENST00000530397	ENST00000370214		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
3UTR-3CDS	ENST00000530397	ENST00000315713		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
3UTR-intron	ENST00000530397	ENST00000484213		TCGA	RV	LUSC	TCGA-37-A5EN-01A	SLC44A3	chr1	95332973	+	ABCD3	chr1	94940699	+
5UTR-intron	ENST00000603798	ENST00000395487		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000429094		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000551601		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000452445		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000549027		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000333837		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000437801		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-intron	ENST00000603798	ENST00000547172		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000603798	ENST00000548826		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000398453	ENST00000395487		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000429094		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000551601		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000452445		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000549027		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000333837		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000437801		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000398453	ENST00000547172		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000398453	ENST00000548826		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000603864	ENST00000395487		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000429094		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000551601		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000452445		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000549027		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000333837		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000437801		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000603864	ENST00000547172		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603864	ENST00000548826		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-intron	ENST00000605627	ENST00000395487		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000429094		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000551601		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000452445		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000549027		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000333837		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000437801		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-intron	ENST00000605627	ENST00000547172		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5UTR-5UTR	ENST00000605627	ENST00000548826		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000603838	ENST00000395487		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000429094		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000551601		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000452445		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000549027		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000333837		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000437801		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000603838	ENST00000547172		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000603838	ENST00000548826		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000604188	ENST00000395487		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000429094		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000551601		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000452445		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000549027		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000333837		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000437801		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-intron	ENST00000604188	ENST00000547172		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
intron-5UTR	ENST00000604188	ENST00000548826		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SMAGP	chr12	51664040	-	NELL2	chr12	45269683	-
5CDS-5UTR	ENST00000397149	ENST00000360265		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000397149	ENST00000358461		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000397149	ENST00000420658		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000397149	ENST00000382543		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-intron	ENST00000397149	ENST00000513842		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000536631	ENST00000360265		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000536631	ENST00000358461		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000536631	ENST00000420658		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-5UTR	ENST00000536631	ENST00000382543		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
5CDS-intron	ENST00000536631	ENST00000513842		TCGA	RV	LUSC	TCGA-63-A5MV-01A	SMU1	chr9	33068822	-	AFAP1	chr4	7873807	-
In-frame	ENST00000377244	ENST00000358658		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
In-frame	ENST00000377244	ENST00000355369		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
In-frame	ENST00000377244	ENST00000339885		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000377244	ENST00000526799		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000377244	ENST00000356632		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000377244	ENST00000340252		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000377244	ENST00000355721		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000377244	ENST00000528884		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
In-frame	ENST00000352068	ENST00000358658		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
In-frame	ENST00000352068	ENST00000355369		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
In-frame	ENST00000352068	ENST00000339885		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000352068	ENST00000526799		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000352068	ENST00000356632		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000352068	ENST00000340252		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000352068	ENST00000355721		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
5CDS-intron	ENST00000352068	ENST00000528884		TCGA	RV	LUSC	TCGA-22-5473-01A	SNX15	chr11	64795108	+	NAALADL1	chr11	64822210	-
In-frame	ENST00000426016	ENST00000395035		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
In-frame	ENST00000426016	ENST00000378803		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000402219	ENST00000395035		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000402219	ENST00000378803		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000395038	ENST00000395035		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000395038	ENST00000378803		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000428721	ENST00000395035		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000428721	ENST00000378803		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000472480	ENST00000395035		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000472480	ENST00000378803		TCGA	RV	LUSC	TCGA-94-8491-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
5CDS-5UTR	ENST00000259400	ENST00000338488		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000259400	ENST00000395097		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000259400	ENST00000330847		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000525640	ENST00000338488		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000525640	ENST00000395097		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000525640	ENST00000330847		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000534052	ENST00000338488		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000534052	ENST00000395097		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000534052	ENST00000330847		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
intron-5UTR	ENST00000525847	ENST00000338488		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
intron-5UTR	ENST00000525847	ENST00000395097		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
intron-intron	ENST00000525847	ENST00000330847		TCGA	RV	LUSC	TCGA-77-8138-01A	STX17	chr9	102677644	+	NR4A3	chr9	102587941	+
5UTR-intron	ENST00000377897	ENST00000311713		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000377897	ENST00000278856		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000529106		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000525239		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000377897	ENST00000525752		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000377897	ENST00000540620		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000311713		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000278856		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000529106		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000525239		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000294179	ENST00000525752		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000294179	ENST00000540620		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000311713		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000278856		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000529106		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000525239		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000394690	ENST00000525752		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000394690	ENST00000540620		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000311713		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000278856		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000529106		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000525239		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000541317	ENST00000525752		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000541317	ENST00000540620		TCGA	RV	LUSC	TCGA-66-2742-01A	STX5	chr11	62599426	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000304363	ENST00000381779		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
intron-5UTR	ENST00000304363	ENST00000338017		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
intron-5UTR	ENST00000304363	ENST00000356928		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
intron-5UTR	ENST00000401547	ENST00000381779		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
intron-5UTR	ENST00000401547	ENST00000338017		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
intron-5UTR	ENST00000401547	ENST00000356928		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000405515	ENST00000381779		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000405515	ENST00000338017		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000405515	ENST00000356928		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000402789	ENST00000381779		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000402789	ENST00000338017		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000402789	ENST00000356928		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000402185	ENST00000381779		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000402185	ENST00000338017		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
5UTR-5UTR	ENST00000402185	ENST00000356928		TCGA	RV	LUSC	TCGA-66-2766-01A	SUV420H1	chr11	67980944	-	SLITRK4	chrX	142718974	-
Frame-shit	ENST00000261716	ENST00000356175		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
Frame-shit	ENST00000261716	ENST00000358273		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000261716	ENST00000431387		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-3UTR	ENST00000261716	ENST00000581113		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000261716	ENST00000417592		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000261716	ENST00000444181		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
Frame-shit	ENST00000536202	ENST00000356175		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
Frame-shit	ENST00000536202	ENST00000358273		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000536202	ENST00000431387		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-3UTR	ENST00000536202	ENST00000581113		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000536202	ENST00000417592		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5CDS-intron	ENST00000536202	ENST00000444181		TCGA	RV	LUSC	TCGA-77-8148-01A	TAOK1	chr17	27829741	+	NF1	chr17	29652838	+
5UTR-5UTR	ENST00000453658	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000453658	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000453658	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-intron	ENST00000453658	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000377259	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000377259	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-5UTR	ENST00000377259	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
5UTR-intron	ENST00000377259	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000377245	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000377245	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000377245	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-intron	ENST00000377245	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000348208	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000348208	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000348208	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-intron	ENST00000348208	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000265384	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000265384	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000265384	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-intron	ENST00000265384	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000535702	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000535702	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000535702	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-intron	ENST00000535702	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000539225	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000539225	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000539225	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-intron	ENST00000539225	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000498204	ENST00000259400		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000498204	ENST00000525640		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-5UTR	ENST00000498204	ENST00000534052		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
intron-intron	ENST00000498204	ENST00000525847		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TJP2	chr9	71766687	+	STX17	chr9	102677460	+
Frame-shit	ENST00000551577	ENST00000337702		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
5CDS-5UTR	ENST00000551577	ENST00000503936		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
Frame-shit	ENST00000266534	ENST00000337702		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
5CDS-5UTR	ENST00000266534	ENST00000503936		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
Frame-shit	ENST00000536799	ENST00000337702		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
5CDS-5UTR	ENST00000536799	ENST00000503936		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
intron-3CDS	ENST00000546978	ENST00000337702		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
intron-5UTR	ENST00000546978	ENST00000503936		TCGA	RV	LUSC	TCGA-43-8116-01A	TMEM117	chr12	44238731	+	TTC33	chr5	40716600	-
5CDS-5UTR	ENST00000436636	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000538048	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000369326	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000341852	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000284483	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000470834	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000460047	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000475336	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000488470	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000357327	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
intron-5UTR	ENST00000464785	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000465393	ENST00000351008		TCGA	RV	LUSC	TCGA-56-7730-01A	TNIK	chr3	171177796	-	SPATA16	chr3	172835539	-
5UTR-intron	ENST00000588847	ENST00000379350		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000379348		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000332995		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000482982		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000379345		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000457702		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000379335		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588847	ENST00000379329		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000379350		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000379348		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000332995		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000482982		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000379345		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000457702		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000379335		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000588061	ENST00000379329		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000379350		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000379348		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000332995		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000482982		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000379345		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000457702		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000379335		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000335749	ENST00000379329		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000379350		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000379348		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000332995		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000482982		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000379345		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000457702		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000379335		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-intron	ENST00000301624	ENST00000379329		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000379350		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000379348		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000332995		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000482982		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000379345		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000457702		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000379335		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000541771	ENST00000379329		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000379350		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000379348		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000332995		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000482982		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000379345		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000457702		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000379335		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
intron-intron	ENST00000544502	ENST00000379329		TCGA	RV	LUSC	TCGA-56-A4BY-01A	TNRC6C	chr17	76001160	+	PHACTR1	chr6	13287295	+
5UTR-3CDS	ENST00000368761	ENST00000368682		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000354650		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000229471		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000368667		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000368678		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000229470		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000356013		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368761	ENST00000538466		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-intron	ENST00000368761	ENST00000476769		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000368682		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000354650		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000229471		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000368667		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000368678		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000229470		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000356013		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000359831	ENST00000538466		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-intron	ENST00000359831	ENST00000476769		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000368682		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000354650		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000229471		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000368667		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000368678		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000229470		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000356013		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000392556	ENST00000538466		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-intron	ENST00000392556	ENST00000476769		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000368682		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000354650		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000229471		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000368667		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000368678		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000229470		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000356013		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000340026	ENST00000538466		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
5UTR-intron	ENST00000340026	ENST00000476769		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000368682		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000354650		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000229471		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000368667		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000368678		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000229470		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000356013		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368731	ENST00000538466		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-intron	ENST00000368731	ENST00000476769		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000368682		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000354650		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000229471		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000368667		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000368678		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000229470		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000356013		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-3CDS	ENST00000368735	ENST00000538466		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
intron-intron	ENST00000368735	ENST00000476769		TCGA	RV	LUSC	TCGA-85-8580-01A	TRAF3IP2	chr6	111926979	-	FYN	chr6	111995833	-
In-frame	ENST00000317907	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	TTC27	chr2	32961883	+	BIRC6	chr2	32828073	+
Frame-shit	ENST00000317907	ENST00000345662		TCGA	RV	LUSC	TCGA-60-2715-01A	TTC27	chr2	32903989	+	SPAST	chr2	32366973	+
Frame-shit	ENST00000317907	ENST00000315285		TCGA	RV	LUSC	TCGA-60-2715-01A	TTC27	chr2	32903989	+	SPAST	chr2	32366973	+
In-frame	ENST00000457313	ENST00000263268		TCGA	RV	LUSC	TCGA-60-2712-01A	TTLL4	chr2	219605307	+	MREG	chr2	216861188	-
In-frame	ENST00000392102	ENST00000263268		TCGA	RV	LUSC	TCGA-60-2712-01A	TTLL4	chr2	219605307	+	MREG	chr2	216861188	-
In-frame	ENST00000442769	ENST00000263268		TCGA	RV	LUSC	TCGA-60-2712-01A	TTLL4	chr2	219605307	+	MREG	chr2	216861188	-
In-frame	ENST00000258398	ENST00000263268		TCGA	RV	LUSC	TCGA-60-2712-01A	TTLL4	chr2	219605307	+	MREG	chr2	216861188	-
In-frame	ENST00000253251	ENST00000294435		TCGA	RV	LUSC	TCGA-56-8082-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10068231	+
5UTR-3CDS	ENST00000377157	ENST00000294435		TCGA	RV	LUSC	TCGA-56-8082-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10068231	+
In-frame	ENST00000343090	ENST00000294435		TCGA	RV	LUSC	TCGA-56-8082-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10068231	+
In-frame	ENST00000377153	ENST00000294435		TCGA	RV	LUSC	TCGA-56-8082-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10068231	+
intron-3CDS	ENST00000475795	ENST00000294435		TCGA	RV	LUSC	TCGA-56-8082-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10068231	+
In-frame	ENST00000540797	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
In-frame	ENST00000380324	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
5UTR-3CDS	ENST00000268049	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
In-frame	ENST00000536001	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
5UTR-3CDS	ENST00000539772	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
intron-3CDS	ENST00000558285	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
intron-3CDS	ENST00000559711	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
intron-3CDS	ENST00000558218	ENST00000443617		TCGA	RV	LUSC	TCGA-77-8139-01A	USP3	chr15	63797029	+	HERC1	chr15	63955403	-
5CDS-intron	ENST00000437048	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000437048	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000437048	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000437048	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000574029	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000574029	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000574029	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000574029	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-intron	ENST00000576149	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-intron	ENST00000576149	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-intron	ENST00000576149	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
intron-5UTR	ENST00000576149	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000446250	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000446250	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000446250	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5UTR-5UTR	ENST00000446250	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000291074	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000571805	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000575800		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000301329		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000301328		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000401468	ENST00000536578		TCGA	RV	LUSC	TCGA-94-8035-01A	VPS53	chr17	613773	-	GLOD4	chr17	681984	-
5CDS-3UTR	ENST00000437079	ENST00000326682		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000437079	ENST00000337331		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000437079	ENST00000476742		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000437079	ENST00000343113		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000437079	ENST00000383282		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000287546	ENST00000326682		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000287546	ENST00000337331		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000287546	ENST00000476742		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000287546	ENST00000343113		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000287546	ENST00000383282		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000436792	ENST00000326682		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000436792	ENST00000337331		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000436792	ENST00000476742		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000436792	ENST00000343113		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000436792	ENST00000383282		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000446204	ENST00000326682		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000446204	ENST00000337331		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000446204	ENST00000476742		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000446204	ENST00000343113		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000446204	ENST00000383282		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000424463	ENST00000326682		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-3UTR	ENST00000424463	ENST00000337331		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000424463	ENST00000476742		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000424463	ENST00000343113		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
5CDS-intron	ENST00000424463	ENST00000383282		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
intron-3UTR	ENST00000463687	ENST00000326682		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
intron-3UTR	ENST00000463687	ENST00000337331		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
intron-intron	ENST00000463687	ENST00000476742		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
intron-intron	ENST00000463687	ENST00000343113		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
intron-intron	ENST00000463687	ENST00000383282		TCGA	RV	LUSC	TCGA-66-2781-01A	VPS8	chr3	184542573	+	NPHP3	chr3	132405231	-
In-frame	ENST00000287387	ENST00000287394		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5CDS-intron	ENST00000287387	ENST00000521903		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5CDS-intron	ENST00000287387	ENST00000534257		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5UTR-3CDS	ENST00000523984	ENST00000287394		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5UTR-intron	ENST00000523984	ENST00000521903		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5UTR-intron	ENST00000523984	ENST00000534257		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
3UTR-3CDS	ENST00000517609	ENST00000287394		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
3UTR-intron	ENST00000517609	ENST00000521903		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
3UTR-intron	ENST00000517609	ENST00000534257		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
In-frame	ENST00000523356	ENST00000287394		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5CDS-intron	ENST00000523356	ENST00000521903		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5CDS-intron	ENST00000523356	ENST00000534257		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
intron-3CDS	ENST00000518125	ENST00000287394		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
intron-intron	ENST00000518125	ENST00000521903		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
intron-intron	ENST00000518125	ENST00000534257		TCGA	RV	LUSC	TCGA-63-A5MB-01A	WDYHV1	chr8	124429096	+	ATAD2	chr8	124361684	-
5CDS-5UTR	ENST00000336755	ENST00000536252		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-intron	ENST00000336755	ENST00000545103		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000336755	ENST00000540348		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000336755	ENST00000543944		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000336755	ENST00000297661		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000336755	ENST00000379186		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000336755	ENST00000359544		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000534928	ENST00000536252		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-intron	ENST00000534928	ENST00000545103		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000534928	ENST00000540348		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000534928	ENST00000543944		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000534928	ENST00000297661		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000534928	ENST00000379186		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
intron-5UTR	ENST00000534928	ENST00000359544		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-5UTR	ENST00000461038	ENST00000536252		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-intron	ENST00000461038	ENST00000545103		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-5UTR	ENST00000461038	ENST00000540348		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-5UTR	ENST00000461038	ENST00000543944		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-5UTR	ENST00000461038	ENST00000297661		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-5UTR	ENST00000461038	ENST00000379186		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
3UTR-5UTR	ENST00000461038	ENST00000359544		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000322831	ENST00000536252		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-intron	ENST00000322831	ENST00000545103		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000322831	ENST00000540348		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000322831	ENST00000543944		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000322831	ENST00000297661		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000322831	ENST00000379186		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-5UTR	ENST00000322831	ENST00000359544		TCGA	RV	LUSC	TCGA-18-3419-01A	ZCCHC7	chr9	37126939	+	UBAP1	chr9	34220906	+
5CDS-intron	ENST00000336755	ENST00000535628		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000336755	ENST00000588982		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000336755	ENST00000586438		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-5UTR	ENST00000336755	ENST00000590800		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000336755	ENST00000332053		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000534928	ENST00000535628		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000534928	ENST00000588982		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000534928	ENST00000586438		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
intron-5UTR	ENST00000534928	ENST00000590800		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
intron-intron	ENST00000534928	ENST00000332053		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
3UTR-intron	ENST00000461038	ENST00000535628		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
3UTR-intron	ENST00000461038	ENST00000588982		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
3UTR-intron	ENST00000461038	ENST00000586438		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
3UTR-5UTR	ENST00000461038	ENST00000590800		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
3UTR-intron	ENST00000461038	ENST00000332053		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000322831	ENST00000535628		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000322831	ENST00000588982		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000322831	ENST00000586438		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-5UTR	ENST00000322831	ENST00000590800		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-intron	ENST00000322831	ENST00000332053		TCGA	RV	LUSC	TCGA-39-5011-01A	ZCCHC7	chr9	37126939	+	ZBTB7C	chr18	45864769	-
5CDS-5UTR	ENST00000374861	ENST00000259407		TCGA	RV	LUSC	TCGA-18-3415-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000374861	ENST00000395051		TCGA	RV	LUSC	TCGA-18-3415-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000259395	ENST00000259407		TCGA	RV	LUSC	TCGA-18-3415-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000259395	ENST00000395051		TCGA	RV	LUSC	TCGA-18-3415-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000339664	ENST00000259407		TCGA	RV	LUSC	TCGA-18-3415-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000339664	ENST00000395051		TCGA	RV	LUSC	TCGA-18-3415-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000374861	ENST00000259407		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000374861	ENST00000395051		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000259395	ENST00000259407		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000259395	ENST00000395051		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000339664	ENST00000259407		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
5CDS-5UTR	ENST00000339664	ENST00000395051		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	ZNF189	chr9	104162292	+	BAAT	chr9	104133745	-
In-frame	ENST00000590751	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
In-frame	ENST00000590751	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
In-frame	ENST00000590751	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
5CDS-intron	ENST00000590751	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000328550	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000328550	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000328550	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
5CDS-intron	ENST00000328550	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000593133	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000593133	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000593133	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
5CDS-intron	ENST00000593133	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000451802	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000451802	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
Frame-shit	ENST00000451802	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
5CDS-intron	ENST00000451802	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
In-frame	ENST00000358744	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
In-frame	ENST00000358744	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
In-frame	ENST00000358744	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
5CDS-intron	ENST00000358744	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ZNF571	chr19	38077569	-	CATSPERG	chr19	38848918	+
5CDS-5UTR	ENST00000293771	ENST00000592685		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000293771	ENST00000380702		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000293771	ENST00000352831		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000293771	ENST00000293683		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000293771	ENST00000440014		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5CDS-intron	ENST00000293771	ENST00000344979		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5UTR-5UTR	ENST00000593191	ENST00000592685		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5UTR-intron	ENST00000593191	ENST00000380702		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5UTR-intron	ENST00000593191	ENST00000352831		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5UTR-intron	ENST00000593191	ENST00000293683		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5UTR-intron	ENST00000593191	ENST00000440014		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5UTR-intron	ENST00000593191	ENST00000344979		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ZNF653	chr19	11609111	-	PDE4A	chr19	10527560	+
5CDS-5UTR	ENST00000327835	ENST00000220597		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF704	chr8	81599461	-	PAG1	chr8	81905542	-
5CDS-intron	ENST00000327835	ENST00000523463		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF704	chr8	81599461	-	PAG1	chr8	81905542	-
5UTR-5UTR	ENST00000520336	ENST00000220597		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF704	chr8	81599461	-	PAG1	chr8	81905542	-
5UTR-intron	ENST00000520336	ENST00000523463		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF704	chr8	81599461	-	PAG1	chr8	81905542	-
intron-5UTR	ENST00000597652	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000597652	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597652	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597652	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597652	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597652	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000596604	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000596604	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000596604	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000596604	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000596604	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000596604	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000597342	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000597342	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597342	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597342	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597342	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597342	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000597832	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000597832	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597832	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597832	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597832	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000597832	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000595295	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000595295	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000595295	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000595295	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000595295	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000595295	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000600634	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000600634	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000600634	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000600634	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000600634	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000600634	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000435989	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000435989	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000435989	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000435989	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000435989	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000435989	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000597807	ENST00000240727		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000597807	ENST00000601144		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597807	ENST00000421612		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597807	ENST00000600404		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597807	ENST00000595944		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000597807	ENST00000594567		TCGA	RV	LUSC	TCGA-94-8491-01A	ZNF814	chr19	58388284	-	ZSCAN18	chr19	58601753	-
Frame-shit	ENST00000354700	ENST00000435064		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
Frame-shit	ENST00000354700	ENST00000411962		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000354700	ENST00000462432		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000354700	ENST00000540437		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000354700	ENST00000421495		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000354700	ENST00000419704		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000354700	ENST00000450926		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000354700	ENST00000545578		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
Frame-shit	ENST00000353662	ENST00000435064		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
Frame-shit	ENST00000353662	ENST00000411962		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000353662	ENST00000462432		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000353662	ENST00000540437		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000353662	ENST00000421495		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000353662	ENST00000419704		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000353662	ENST00000450926		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
5CDS-5UTR	ENST00000353662	ENST00000545578		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-3CDS	ENST00000379037	ENST00000435064		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-3CDS	ENST00000379037	ENST00000411962		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000379037	ENST00000462432		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000379037	ENST00000540437		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000379037	ENST00000421495		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000379037	ENST00000419704		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000379037	ENST00000450926		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000379037	ENST00000545578		TCGA	RV	LUSC	TCGA-21-1076-01A	ACAP3	chr1	1231805	-	CPSF3L	chr1	1250818	-
intron-5UTR	ENST00000464611	ENST00000262982		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-5UTR	ENST00000464611	ENST00000542325		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-intron	ENST00000464611	ENST00000396192		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-intron	ENST00000464611	ENST00000469700		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-5UTR	ENST00000331789	ENST00000262982		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-5UTR	ENST00000331789	ENST00000542325		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-intron	ENST00000331789	ENST00000396192		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
intron-intron	ENST00000331789	ENST00000469700		TCGA	RV	LUSC	TCGA-77-7337-01A	ACTB	chr7	5567255	-	CSE1L	chr20	47662862	+
Frame-shit	ENST00000530069	ENST00000323646		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
Frame-shit	ENST00000530069	ENST00000415826		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
5CDS-5UTR	ENST00000530069	ENST00000394613		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
Frame-shit	ENST00000349015	ENST00000323646		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
Frame-shit	ENST00000349015	ENST00000415826		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
5CDS-5UTR	ENST00000349015	ENST00000394613		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
5UTR-3CDS	ENST00000531881	ENST00000323646		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
5UTR-3CDS	ENST00000531881	ENST00000415826		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
5UTR-5UTR	ENST00000531881	ENST00000394613		TCGA	RV	LUSC	TCGA-92-7341-01A	ALDH3B2	chr11	67434377	-	PLA2G16	chr11	63357840	-
Frame-shit	ENST00000302708	ENST00000537978		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
Frame-shit	ENST00000302708	ENST00000525139		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
Frame-shit	ENST00000302708	ENST00000256737		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5CDS-intron	ENST00000302708	ENST00000531646		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5CDS-intron	ENST00000302708	ENST00000531568		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5CDS-intron	ENST00000302708	ENST00000529242		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
Frame-shit	ENST00000378840	ENST00000537978		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
Frame-shit	ENST00000378840	ENST00000525139		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
Frame-shit	ENST00000378840	ENST00000256737		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5CDS-intron	ENST00000378840	ENST00000531646		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5CDS-intron	ENST00000378840	ENST00000531568		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5CDS-intron	ENST00000378840	ENST00000529242		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
3UTR-3CDS	ENST00000532410	ENST00000537978		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
3UTR-3CDS	ENST00000532410	ENST00000525139		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
3UTR-3CDS	ENST00000532410	ENST00000256737		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
3UTR-intron	ENST00000532410	ENST00000531646		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
3UTR-intron	ENST00000532410	ENST00000531568		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
3UTR-intron	ENST00000532410	ENST00000529242		TCGA	RV	LUSC	TCGA-60-2714-01A	ALKBH3	chr11	43905567	+	ANO3	chr11	26646009	+
5UTR-intron	ENST00000306065	ENST00000587077		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000306065	ENST00000392250		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000306065	ENST00000586987		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000306065	ENST00000342179		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000306065	ENST00000590651		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000587352	ENST00000587077		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000587352	ENST00000392250		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000587352	ENST00000586987		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000587352	ENST00000342179		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
5UTR-intron	ENST00000587352	ENST00000590651		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	ANKRD27	chr19	33165977	-	DPY19L3	chr19	32944051	+
In-frame	ENST00000306065	ENST00000355537		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ANKRD27	chr19	33098541	-	ZNF536	chr19	31025754	+
5CDS-intron	ENST00000306065	ENST00000590564		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ANKRD27	chr19	33098541	-	ZNF536	chr19	31025754	+
intron-3CDS	ENST00000587352	ENST00000355537		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ANKRD27	chr19	33098541	-	ZNF536	chr19	31025754	+
intron-intron	ENST00000587352	ENST00000590564		TCGA	RV	LUSC	TCGA-37-A5EN-01A	ANKRD27	chr19	33098541	-	ZNF536	chr19	31025754	+
intron-3CDS	ENST00000379825	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000309615	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
In-frame	ENST00000397172	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000379817	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000436040	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000379819	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000468275	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000463596	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000476858	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000379813	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
intron-3CDS	ENST00000473270	ENST00000377275		TCGA	RV	LUSC	TCGA-39-5037-01A	APTX	chr9	32987758	-	ARL5B	chr10	18961551	+
In-frame	ENST00000263245	ENST00000337959		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000263245	ENST00000263246		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000263245	ENST00000407585		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000263245	ENST00000403744		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000263245	ENST00000402229		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000429508	ENST00000337959		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000429508	ENST00000263246		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000429508	ENST00000407585		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000429508	ENST00000403744		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000429508	ENST00000402229		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000437119	ENST00000337959		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000437119	ENST00000263246		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000437119	ENST00000407585		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000437119	ENST00000403744		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000437119	ENST00000402229		TCGA	RV	LUSC	TCGA-94-8491-01A	ARFGAP3	chr22	43253120	-	PACSIN2	chr22	43289619	-
In-frame	ENST00000366603	ENST00000546136		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000366603	ENST00000381381		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000366603	ENST00000309359		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000366603	ENST00000451604		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000366603	ENST00000537393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000366603	ENST00000541536		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000366603	ENST00000396007		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000366603	ENST00000545921		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000366603	ENST00000541847		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000366603	ENST00000441133		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000366603	ENST00000536850		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
In-frame	ENST00000264183	ENST00000546136		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000264183	ENST00000381381		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000264183	ENST00000309359		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000264183	ENST00000451604		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000264183	ENST00000537393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-5UTR	ENST00000264183	ENST00000541536		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000264183	ENST00000396007		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000264183	ENST00000545921		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000264183	ENST00000541847		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000264183	ENST00000441133		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000264183	ENST00000536850		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-3CDS	ENST00000349213	ENST00000546136		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000349213	ENST00000381381		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000349213	ENST00000309359		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000349213	ENST00000451604		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000349213	ENST00000537393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000349213	ENST00000541536		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000349213	ENST00000396007		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000349213	ENST00000545921		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000349213	ENST00000541847		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000349213	ENST00000441133		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000349213	ENST00000536850		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-3CDS	ENST00000494543	ENST00000546136		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000494543	ENST00000381381		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000494543	ENST00000309359		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000494543	ENST00000451604		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000494543	ENST00000537393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-5UTR	ENST00000494543	ENST00000541536		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000494543	ENST00000396007		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000494543	ENST00000545921		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000494543	ENST00000541847		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000494543	ENST00000441133		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
intron-intron	ENST00000494543	ENST00000536850		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ARID4B	chr1	235377084	-	SOX5	chr12	24048958	-
5CDS-intron	ENST00000355221	ENST00000220676		TCGA	RV	LUSC	TCGA-66-2758-01A	ATP6V1H	chr8	54656137	-	RP1	chr8	55667363	+
5CDS-intron	ENST00000520188	ENST00000220676		TCGA	RV	LUSC	TCGA-66-2758-01A	ATP6V1H	chr8	54656137	-	RP1	chr8	55667363	+
5CDS-intron	ENST00000359530	ENST00000220676		TCGA	RV	LUSC	TCGA-66-2758-01A	ATP6V1H	chr8	54656137	-	RP1	chr8	55667363	+
5UTR-intron	ENST00000523899	ENST00000220676		TCGA	RV	LUSC	TCGA-66-2758-01A	ATP6V1H	chr8	54656137	-	RP1	chr8	55667363	+
5CDS-intron	ENST00000396774	ENST00000220676		TCGA	RV	LUSC	TCGA-66-2758-01A	ATP6V1H	chr8	54656137	-	RP1	chr8	55667363	+
5CDS-intron	ENST00000373344	ENST00000610214		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
5CDS-5UTR	ENST00000373344	ENST00000435339		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
5CDS-intron	ENST00000395603	ENST00000610214		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
5CDS-5UTR	ENST00000395603	ENST00000435339		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
5UTR-intron	ENST00000480283	ENST00000610214		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
5UTR-5UTR	ENST00000480283	ENST00000435339		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
intron-intron	ENST00000373341	ENST00000610214		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
intron-5UTR	ENST00000373341	ENST00000435339		TCGA	RV	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78010288	+
In-frame	ENST00000262320	ENST00000354905		TCGA	RV	LUSC	TCGA-77-8008-01A	AXIN1	chr16	354304	-	TMEM207	chr3	190165616	-
In-frame	ENST00000354866	ENST00000354905		TCGA	RV	LUSC	TCGA-77-8008-01A	AXIN1	chr16	354304	-	TMEM207	chr3	190165616	-
5UTR-3CDS	ENST00000481769	ENST00000354905		TCGA	RV	LUSC	TCGA-77-8008-01A	AXIN1	chr16	354304	-	TMEM207	chr3	190165616	-
Frame-shit	ENST00000262320	ENST00000431232		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5CDS-intron	ENST00000262320	ENST00000250930		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5CDS-5UTR	ENST00000262320	ENST00000476735		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
Frame-shit	ENST00000354866	ENST00000431232		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5CDS-intron	ENST00000354866	ENST00000250930		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5CDS-5UTR	ENST00000354866	ENST00000476735		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5UTR-3CDS	ENST00000481769	ENST00000431232		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5UTR-intron	ENST00000481769	ENST00000250930		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5UTR-5UTR	ENST00000481769	ENST00000476735		TCGA	RV	LUSC	TCGA-98-A53A-01A	AXIN1	chr16	364543	-	TMEM8A	chr16	427848	-
5CDS-intron	ENST00000399782	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000399782	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000399782	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000399782	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000399782	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000317582	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000317582	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000317582	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000317582	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000317582	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000543133	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000543133	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000543133	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000543133	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000543133	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000538149	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000538149	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000538149	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000538149	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000538149	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000337612	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000337612	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000337612	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000337612	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-intron	ENST00000337612	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000493680	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000493680	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000493680	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000493680	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000493680	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000355028	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000355028	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000355028	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000355028	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000355028	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000418951	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000418951	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000418951	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000418951	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5CDS-intron	ENST00000418951	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000485631	ENST00000342247		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000485631	ENST00000400585		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000485631	ENST00000497534		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000485631	ENST00000400573		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
intron-intron	ENST00000485631	ENST00000262608		TCGA	RV	LUSC	TCGA-77-8140-01A	BCL2L13	chr22	18166087	+	CECR2	chr22	18027838	+
5UTR-5UTR	ENST00000278174	ENST00000282091		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000278174	ENST00000529816		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
intron-5UTR	ENST00000530907	ENST00000282091		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
intron-5UTR	ENST00000530907	ENST00000529816		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000528120	ENST00000282091		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
5UTR-5UTR	ENST00000528120	ENST00000529816		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
intron-5UTR	ENST00000532261	ENST00000282091		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
intron-5UTR	ENST00000532261	ENST00000529816		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13514407	-
Frame-shit	ENST00000369287	ENST00000439649		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000369287	ENST00000369236		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000369287	ENST00000355422		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000369287	ENST00000544592		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
5CDS-intron	ENST00000369287	ENST00000490345		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000543782	ENST00000439649		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000543782	ENST00000369236		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000543782	ENST00000355422		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000543782	ENST00000544592		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
5CDS-intron	ENST00000543782	ENST00000490345		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000497592	ENST00000439649		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000497592	ENST00000369236		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000497592	ENST00000355422		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000497592	ENST00000544592		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-intron	ENST00000497592	ENST00000490345		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369285	ENST00000439649		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369285	ENST00000369236		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369285	ENST00000355422		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369285	ENST00000544592		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-intron	ENST00000369285	ENST00000490345		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369286	ENST00000439649		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369286	ENST00000369236		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369286	ENST00000355422		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-3CDS	ENST00000369286	ENST00000544592		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
intron-intron	ENST00000369286	ENST00000490345		TCGA	RV	LUSC	TCGA-85-8070-01A	C10orf118	chr10	115894672	-	GFRA1	chr10	117885068	-
Frame-shit	ENST00000294244	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	C11orf84	chr11	63581285	+	BUB1B	chr15	40468678	+
Frame-shit	ENST00000294244	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	C11orf84	chr11	63581285	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000294244	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	C11orf84	chr11	63581285	+	BUB1B	chr15	40468678	+
Frame-shit	ENST00000409466	ENST00000389811		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
Frame-shit	ENST00000409466	ENST00000439055		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
Frame-shit	ENST00000409466	ENST00000340561		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5CDS-intron	ENST00000409466	ENST00000496981		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
In-frame	ENST00000334816	ENST00000389811		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
In-frame	ENST00000334816	ENST00000439055		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
In-frame	ENST00000334816	ENST00000340561		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5CDS-intron	ENST00000334816	ENST00000496981		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
In-frame	ENST00000409877	ENST00000389811		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
In-frame	ENST00000409877	ENST00000439055		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
In-frame	ENST00000409877	ENST00000340561		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5CDS-intron	ENST00000409877	ENST00000496981		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
Frame-shit	ENST00000409523	ENST00000389811		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
Frame-shit	ENST00000409523	ENST00000439055		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
Frame-shit	ENST00000409523	ENST00000340561		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5CDS-intron	ENST00000409523	ENST00000496981		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5UTR-3CDS	ENST00000498049	ENST00000389811		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5UTR-3CDS	ENST00000498049	ENST00000439055		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5UTR-3CDS	ENST00000498049	ENST00000340561		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5UTR-intron	ENST00000498049	ENST00000496981		TCGA	RV	LUSC	TCGA-85-7696-01A	C2orf76	chr2	120097403	-	ACOXL	chr2	111542309	+
5CDS-intron	ENST00000533820	ENST00000233057		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000533820	ENST00000395127		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000533820	ENST00000405334		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000533129	ENST00000233057		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000533129	ENST00000395127		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000533129	ENST00000405334		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000524773	ENST00000233057		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000524773	ENST00000395127		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000524773	ENST00000405334		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000279247	ENST00000233057		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000279247	ENST00000395127		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000279247	ENST00000405334		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527469	ENST00000233057		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527469	ENST00000395127		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527469	ENST00000405334		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527323	ENST00000233057		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527323	ENST00000395127		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000527323	ENST00000405334		TCGA	RV	LUSC	TCGA-66-2737-01A	CAPN1	chr11	64979476	+	EIF2AK2	chr2	37342384	-
3UTR-3CDS	ENST00000341505	ENST00000425690		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-3CDS	ENST00000341505	ENST00000344956		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-3CDS	ENST00000341505	ENST00000403059		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-intron	ENST00000341505	ENST00000406449		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-3CDS	ENST00000270279	ENST00000425690		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-3CDS	ENST00000270279	ENST00000344956		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-3CDS	ENST00000270279	ENST00000403059		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
3UTR-intron	ENST00000270279	ENST00000406449		TCGA	RV	LUSC	TCGA-56-A4BX-01A	CBLC	chr19	45303707	+	PVR	chr19	45164559	+
5CDS-intron	ENST00000271332	ENST00000354817		TCGA	RV	LUSC	TCGA-56-A4BY-01A	CELSR2	chr1	109818372	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000271332	ENST00000527202		TCGA	RV	LUSC	TCGA-56-A4BY-01A	CELSR2	chr1	109818372	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000271332	ENST00000532502		TCGA	RV	LUSC	TCGA-56-A4BY-01A	CELSR2	chr1	109818372	+	FAR1	chr11	13744912	+
intron-intron	ENST00000498157	ENST00000354817		TCGA	RV	LUSC	TCGA-56-A4BY-01A	CELSR2	chr1	109818372	+	FAR1	chr11	13744912	+
intron-intron	ENST00000498157	ENST00000527202		TCGA	RV	LUSC	TCGA-56-A4BY-01A	CELSR2	chr1	109818372	+	FAR1	chr11	13744912	+
intron-intron	ENST00000498157	ENST00000532502		TCGA	RV	LUSC	TCGA-56-A4BY-01A	CELSR2	chr1	109818372	+	FAR1	chr11	13744912	+
5CDS-5UTR	ENST00000335783	ENST00000274813		TCGA	RV	LUSC	TCGA-85-6798-01A	CENPQ	chr6	49456397	+	MUT	chr6	49427218	-
Frame-shit	ENST00000382565	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000382578	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
In-frame	ENST00000382566	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000348295	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
5UTR-3CDS	ENST00000544772	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
In-frame	ENST00000404276	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000328354	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000405598	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000382580	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
In-frame	ENST00000402731	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
In-frame	ENST00000403642	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
intron-3CDS	ENST00000464581	ENST00000216071		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	CHEK2	chr22	29130391	-	C22orf31	chr22	29456831	-
Frame-shit	ENST00000284224	ENST00000601935		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000284224	ENST00000600313		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000284224	ENST00000596211		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000284224	ENST00000359788		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000284224	ENST00000601010		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000284224	ENST00000599168		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000581714	ENST00000601935		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000581714	ENST00000600313		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000581714	ENST00000596211		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000581714	ENST00000359788		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000581714	ENST00000601010		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000581714	ENST00000599168		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000580774	ENST00000601935		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000580774	ENST00000600313		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000580774	ENST00000596211		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000580774	ENST00000359788		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000580774	ENST00000601010		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
Frame-shit	ENST00000580774	ENST00000599168		TCGA	RV	LUSC	TCGA-70-6723-01A	CHST9	chr18	24722653	-	ZNF675	chr19	23845960	-
In-frame	ENST00000376355	ENST00000403766		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000376355	ENST00000376440		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
5CDS-3UTR	ENST00000376355	ENST00000460562		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000444838	ENST00000403766		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000444838	ENST00000376440		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
5CDS-3UTR	ENST00000444838	ENST00000460562		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000376360	ENST00000403766		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000376360	ENST00000376440		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
5CDS-3UTR	ENST00000376360	ENST00000460562		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000376354	ENST00000403766		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000376354	ENST00000376440		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
5CDS-3UTR	ENST00000376354	ENST00000460562		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000339105	ENST00000403766		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
In-frame	ENST00000339105	ENST00000376440		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
5CDS-3UTR	ENST00000339105	ENST00000460562		TCGA	RV	LUSC	TCGA-77-A5GH-01A	CLYBL	chr13	100425264	+	UBAC2	chr13	100020041	+
5UTR-3CDS	ENST00000527185	ENST00000301194		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000527185	ENST00000376530		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000527185	ENST00000391739		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000527185	ENST00000376531		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3UTR	ENST00000527185	ENST00000489425		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000528682	ENST00000301194		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000528682	ENST00000376530		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000528682	ENST00000391739		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000528682	ENST00000376531		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3UTR	ENST00000528682	ENST00000489425		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000524871	ENST00000301194		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000524871	ENST00000376530		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000524871	ENST00000391739		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3CDS	ENST00000524871	ENST00000376531		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
5UTR-3UTR	ENST00000524871	ENST00000489425		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000418526	ENST00000301194		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000418526	ENST00000376530		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000418526	ENST00000391739		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000418526	ENST00000376531		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3UTR	ENST00000418526	ENST00000489425		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000279463	ENST00000301194		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000279463	ENST00000376530		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000279463	ENST00000391739		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000279463	ENST00000376531		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3UTR	ENST00000279463	ENST00000489425		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000524560	ENST00000301194		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000524560	ENST00000376530		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000524560	ENST00000391739		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3CDS	ENST00000524560	ENST00000376531		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
intron-3UTR	ENST00000524560	ENST00000489425		TCGA	RV	LUSC	TCGA-66-2781-01A	CNTN5	chr11	98892000	+	TTYH1	chr19	54946722	+
3UTR-3CDS	ENST00000371817	ENST00000356136		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-3CDS	ENST00000371817	ENST00000528420		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-5UTR	ENST00000371817	ENST00000533454		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-5UTR	ENST00000371817	ENST00000531818		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-5UTR	ENST00000371817	ENST00000532130		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-intron	ENST00000371817	ENST00000539288		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-intron	ENST00000371817	ENST00000525872		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
3UTR-intron	ENST00000371817	ENST00000538870		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000464187	ENST00000356136		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000464187	ENST00000528420		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000464187	ENST00000533454		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000464187	ENST00000531818		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000464187	ENST00000532130		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000464187	ENST00000539288		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000464187	ENST00000525872		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000464187	ENST00000538870		TCGA	RV	LUSC	TCGA-56-8201-01A	COL5A1	chr9	137734719	+	UVRAG	chr11	75694431	+
5UTR-3CDS	ENST00000396533	ENST00000376573		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-5UTR	ENST00000396533	ENST00000545335		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000396533	ENST00000323883		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000396533	ENST00000422321		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-3CDS	ENST00000355591	ENST00000376573		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-5UTR	ENST00000355591	ENST00000545335		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000355591	ENST00000323883		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
5UTR-intron	ENST00000355591	ENST00000422321		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-3CDS	ENST00000543208	ENST00000376573		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-5UTR	ENST00000543208	ENST00000545335		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-intron	ENST00000543208	ENST00000323883		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-intron	ENST00000543208	ENST00000422321		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-3CDS	ENST00000302930	ENST00000376573		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-5UTR	ENST00000302930	ENST00000545335		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-intron	ENST00000302930	ENST00000323883		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
intron-intron	ENST00000302930	ENST00000422321		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	COX7B2	chr4	46911177	-	PIP4K2A	chr10	22898646	-
3UTR-5UTR	ENST00000435070	ENST00000408952		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000435070	ENST00000400809		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000435070	ENST00000505849		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-intron	ENST00000435070	ENST00000408918		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000456847	ENST00000408952		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000456847	ENST00000400809		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000456847	ENST00000505849		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-intron	ENST00000456847	ENST00000408918		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000266679	ENST00000408952		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000266679	ENST00000400809		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000266679	ENST00000505849		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-intron	ENST00000266679	ENST00000408918		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-5UTR	ENST00000550987	ENST00000408952		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-5UTR	ENST00000550987	ENST00000400809		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-5UTR	ENST00000550987	ENST00000505849		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-intron	ENST00000550987	ENST00000408918		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-5UTR	ENST00000551516	ENST00000408952		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-5UTR	ENST00000551516	ENST00000400809		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-5UTR	ENST00000551516	ENST00000505849		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-intron	ENST00000551516	ENST00000408918		TCGA	RV	LUSC	TCGA-85-A513-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-intron	ENST00000400967	ENST00000304685		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
intron-5UTR	ENST00000400967	ENST00000536277		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
intron-intron	ENST00000400967	ENST00000360851		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
intron-intron	ENST00000400967	ENST00000539189		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000235453	ENST00000304685		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-5UTR	ENST00000235453	ENST00000536277		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000235453	ENST00000360851		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000235453	ENST00000539189		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000367396	ENST00000304685		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5CDS-5UTR	ENST00000367396	ENST00000536277		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000367396	ENST00000360851		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5CDS-intron	ENST00000367396	ENST00000539189		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000477581	ENST00000304685		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-5UTR	ENST00000477581	ENST00000536277		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000477581	ENST00000360851		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5UTR-intron	ENST00000477581	ENST00000539189		TCGA	RV	LUSC	TCGA-18-3407-01A	DENND1B	chr1	197741998	-	RGL1	chr1	183666538	+
5CDS-3UTR	ENST00000273009	ENST00000389874		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000273009	ENST00000409685		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-intron	ENST00000273009	ENST00000243806		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000360410	ENST00000389874		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000360410	ENST00000409685		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-intron	ENST00000360410	ENST00000243806		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000325385	ENST00000389874		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000325385	ENST00000409685		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-intron	ENST00000325385	ENST00000243806		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000409401	ENST00000389874		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000409401	ENST00000409685		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-intron	ENST00000409401	ENST00000243806		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000409307	ENST00000389874		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-3UTR	ENST00000409307	ENST00000409685		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
5CDS-intron	ENST00000409307	ENST00000243806		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
3UTR-3UTR	ENST00000470087	ENST00000389874		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
3UTR-3UTR	ENST00000470087	ENST00000409685		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
3UTR-intron	ENST00000470087	ENST00000243806		TCGA	RV	LUSC	TCGA-18-3411-01A	DIS3L2	chr2	232952431	+	FAM124B	chr2	225244925	-
Frame-shit	ENST00000249270	ENST00000380050		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000249270	ENST00000265741		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000249270	ENST00000406263		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000249270	ENST00000436577		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
5CDS-intron	ENST00000249270	ENST00000496279		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000379263	ENST00000380050		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000379263	ENST00000265741		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000379263	ENST00000406263		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000379263	ENST00000436577		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
5CDS-intron	ENST00000379263	ENST00000496279		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000412522	ENST00000380050		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000412522	ENST00000265741		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000412522	ENST00000406263		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
Frame-shit	ENST00000412522	ENST00000436577		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
5CDS-intron	ENST00000412522	ENST00000496279		TCGA	RV	LUSC	TCGA-85-8351-01A	DNAJC2	chr7	102985006	-	CDK14	chr7	90492490	+
5UTR-3CDS	ENST00000342239	ENST00000382978		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000400230		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000255310		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000400103		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000390680		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000382975		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000457266		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000342239	ENST00000382977		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000382978		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000400230		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000255310		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000400103		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000390680		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000382975		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000457266		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000324109	ENST00000382977		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000382978		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000400230		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000255310		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000400103		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000390680		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000382975		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000457266		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000543621	ENST00000382977		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000382978		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000400230		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000255310		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000400103		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000390680		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000382975		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000457266		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000540316	ENST00000382977		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000382978		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000400230		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000255310		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000400103		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000390680		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000382975		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000457266		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
intron-3CDS	ENST00000472036	ENST00000382977		TCGA	RV	LUSC	TCGA-60-2720-01A	DNMBP	chr10	101769595	-	TPTE2	chr13	20012293	-
5UTR-3CDS	ENST00000372979	ENST00000310715		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-3CDS	ENST00000372979	ENST00000401621		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000372979	ENST00000493787		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-intron	ENST00000372979	ENST00000340329		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000372979	ENST00000355577		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000372979	ENST00000394865		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-3CDS	ENST00000454759	ENST00000310715		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-3CDS	ENST00000454759	ENST00000401621		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000454759	ENST00000493787		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-intron	ENST00000454759	ENST00000340329		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000454759	ENST00000355577		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000454759	ENST00000394865		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-3CDS	ENST00000430082	ENST00000310715		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-3CDS	ENST00000430082	ENST00000401621		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000430082	ENST00000493787		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-intron	ENST00000430082	ENST00000340329		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000430082	ENST00000355577		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5UTR-5UTR	ENST00000430082	ENST00000394865		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
intron-3CDS	ENST00000610256	ENST00000310715		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
intron-3CDS	ENST00000610256	ENST00000401621		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
intron-5UTR	ENST00000610256	ENST00000493787		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
intron-intron	ENST00000610256	ENST00000340329		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
intron-5UTR	ENST00000610256	ENST00000355577		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
intron-5UTR	ENST00000610256	ENST00000394865		TCGA	RV	LUSC	TCGA-60-2695-01A	ECD	chr10	74927624	-	TTC18	chr10	75091034	-
5CDS-5UTR	ENST00000401432	ENST00000252575		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
5CDS-intron	ENST00000401432	ENST00000538881		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
5CDS-5UTR	ENST00000403714	ENST00000252575		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
5CDS-intron	ENST00000403714	ENST00000538881		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
5UTR-5UTR	ENST00000402191	ENST00000252575		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
5UTR-intron	ENST00000402191	ENST00000538881		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
intron-5UTR	ENST00000405108	ENST00000252575		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
intron-intron	ENST00000405108	ENST00000538881		TCGA	RV	LUSC	TCGA-52-7809-01A	EFR3B	chr2	25314270	+	NCAN	chr19	19327756	+
5CDS-intron	ENST00000239938	ENST00000354817		TCGA	RV	LUSC	TCGA-56-8623-01A	EGR1	chr5	137805004	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000239938	ENST00000527202		TCGA	RV	LUSC	TCGA-56-8623-01A	EGR1	chr5	137805004	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000239938	ENST00000532502		TCGA	RV	LUSC	TCGA-56-8623-01A	EGR1	chr5	137805004	+	FAR1	chr11	13744912	+
Frame-shit	ENST00000263253	ENST00000397906		TCGA	RV	LUSC	TCGA-34-5929-01A	EP300	chr22	41523752	+	TTC28	chr22	28702631	-
5CDS-5UTR	ENST00000263253	ENST00000490475		TCGA	RV	LUSC	TCGA-34-5929-01A	EP300	chr22	41523752	+	TTC28	chr22	28702631	-
5CDS-5UTR	ENST00000267101	ENST00000356124		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000267101	ENST00000266971		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000267101	ENST00000394115		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000267101	ENST00000548274		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-3UTR	ENST00000267101	ENST00000550478		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000267101	ENST00000551841		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000267101	ENST00000394109		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000450146	ENST00000356124		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000450146	ENST00000266971		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000450146	ENST00000394115		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000450146	ENST00000548274		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-3UTR	ENST00000450146	ENST00000550478		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000450146	ENST00000551841		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000450146	ENST00000394109		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000415288	ENST00000356124		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000415288	ENST00000266971		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000415288	ENST00000394115		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000415288	ENST00000548274		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-3UTR	ENST00000415288	ENST00000550478		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000415288	ENST00000551841		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000415288	ENST00000394109		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000553131	ENST00000356124		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000553131	ENST00000266971		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000553131	ENST00000394115		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000553131	ENST00000548274		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-3UTR	ENST00000553131	ENST00000550478		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000553131	ENST00000551841		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000553131	ENST00000394109		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-5UTR	ENST00000411731	ENST00000356124		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-5UTR	ENST00000411731	ENST00000266971		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-5UTR	ENST00000411731	ENST00000394115		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-5UTR	ENST00000411731	ENST00000548274		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-3UTR	ENST00000411731	ENST00000550478		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-5UTR	ENST00000411731	ENST00000551841		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
intron-5UTR	ENST00000411731	ENST00000394109		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000549832	ENST00000356124		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000549832	ENST00000266971		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000549832	ENST00000394115		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000549832	ENST00000548274		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-3UTR	ENST00000549832	ENST00000550478		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000549832	ENST00000551841		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5CDS-5UTR	ENST00000549832	ENST00000394109		TCGA	RV	LUSC	TCGA-98-A53A-01A	ERBB3	chr12	56494029	+	SUOX	chr12	56395996	+
5UTR-3CDS	ENST00000214893	ENST00000327155		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000214893	ENST00000399722		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000214893	ENST00000399725		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000214893	ENST00000360790		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-intron	ENST00000214893	ENST00000581687		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
In-frame	ENST00000339450	ENST00000327155		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
In-frame	ENST00000339450	ENST00000399722		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
In-frame	ENST00000339450	ENST00000399725		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
In-frame	ENST00000339450	ENST00000360790		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5CDS-intron	ENST00000339450	ENST00000581687		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
intron-3CDS	ENST00000543230	ENST00000327155		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
intron-3CDS	ENST00000543230	ENST00000399722		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
intron-3CDS	ENST00000543230	ENST00000399725		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
intron-3CDS	ENST00000543230	ENST00000360790		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
intron-intron	ENST00000543230	ENST00000581687		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000381506	ENST00000327155		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000381506	ENST00000399722		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000381506	ENST00000399725		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000381506	ENST00000360790		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-intron	ENST00000381506	ENST00000581687		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ERMP1	chr9	5830727	-	RBBP8	chr18	20555116	+
5UTR-3CDS	ENST00000064778	ENST00000340353		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-intron	ENST00000064778	ENST00000532959		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-intron	ENST00000064778	ENST00000305494		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-5UTR	ENST00000064778	ENST00000535167		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-5UTR	ENST00000064778	ENST00000355734		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-3CDS	ENST00000450446	ENST00000340353		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-intron	ENST00000450446	ENST00000532959		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-intron	ENST00000450446	ENST00000305494		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-5UTR	ENST00000450446	ENST00000535167		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-5UTR	ENST00000450446	ENST00000355734		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-3CDS	ENST00000356467	ENST00000340353		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-intron	ENST00000356467	ENST00000532959		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-intron	ENST00000356467	ENST00000305494		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-5UTR	ENST00000356467	ENST00000535167		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
5UTR-5UTR	ENST00000356467	ENST00000355734		TCGA	RV	LUSC	TCGA-94-7557-01A	FAM168A	chr11	73308968	-	TMEM135	chr11	86778736	+
Frame-shit	ENST00000261800	ENST00000521264		TCGA	RV	LUSC	TCGA-85-8071-01A	FAT2	chr5	150921846	-	ATOX1	chr5	151131340	-
5CDS-5UTR	ENST00000261800	ENST00000522314		TCGA	RV	LUSC	TCGA-85-8071-01A	FAT2	chr5	150921846	-	ATOX1	chr5	151131340	-
5CDS-5UTR	ENST00000261800	ENST00000520382		TCGA	RV	LUSC	TCGA-85-8071-01A	FAT2	chr5	150921846	-	ATOX1	chr5	151131340	-
5CDS-5UTR	ENST00000261800	ENST00000524142		TCGA	RV	LUSC	TCGA-85-8071-01A	FAT2	chr5	150921846	-	ATOX1	chr5	151131340	-
5CDS-5UTR	ENST00000261800	ENST00000313115		TCGA	RV	LUSC	TCGA-85-8071-01A	FAT2	chr5	150921846	-	ATOX1	chr5	151131340	-
5CDS-5UTR	ENST00000261800	ENST00000522710		TCGA	RV	LUSC	TCGA-85-8071-01A	FAT2	chr5	150921846	-	ATOX1	chr5	151131340	-
intron-intron	ENST00000421182	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000421182	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000421182	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000357867	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000357867	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000357867	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000323926	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000323926	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000323926	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000336916	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000336916	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000336916	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000354785	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000354785	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000354785	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000357009	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000357009	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000357009	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000346544	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000346544	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000346544	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000345488	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000345488	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000345488	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000359671	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000359671	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
5CDS-intron	ENST00000359671	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000446046	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000446046	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000446046	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000443816	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000443816	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000443816	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000432072	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000432072	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000432072	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000356005	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000356005	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000356005	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000490833	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000490833	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000490833	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000426059	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000426059	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
intron-intron	ENST00000426059	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	FN1	chr2	216225181	-	UTRN	chr6	144665237	+
Frame-shit	ENST00000265070	ENST00000273286		TCGA	RV	LUSC	TCGA-18-3416-01A	GOLPH3	chr5	32135678	-	LRTM1	chr3	54952919	-
Frame-shit	ENST00000265070	ENST00000493075		TCGA	RV	LUSC	TCGA-18-3416-01A	GOLPH3	chr5	32135678	-	LRTM1	chr3	54952919	-
5UTR-3CDS	ENST00000512668	ENST00000273286		TCGA	RV	LUSC	TCGA-18-3416-01A	GOLPH3	chr5	32135678	-	LRTM1	chr3	54952919	-
5UTR-3CDS	ENST00000512668	ENST00000493075		TCGA	RV	LUSC	TCGA-18-3416-01A	GOLPH3	chr5	32135678	-	LRTM1	chr3	54952919	-
In-frame	ENST00000398016	ENST00000367818		TCGA	RV	LUSC	TCGA-85-8354-01A	GRIP1	chr12	66932858	-	XCL1	chr1	168550290	+
In-frame	ENST00000359742	ENST00000367818		TCGA	RV	LUSC	TCGA-85-8354-01A	GRIP1	chr12	66932858	-	XCL1	chr1	168550290	+
In-frame	ENST00000286445	ENST00000367818		TCGA	RV	LUSC	TCGA-85-8354-01A	GRIP1	chr12	66932858	-	XCL1	chr1	168550290	+
intron-3CDS	ENST00000542021	ENST00000367818		TCGA	RV	LUSC	TCGA-85-8354-01A	GRIP1	chr12	66932858	-	XCL1	chr1	168550290	+
In-frame	ENST00000310441	ENST00000273854		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
Frame-shit	ENST00000310441	ENST00000432638		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
In-frame	ENST00000310441	ENST00000354839		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
5CDS-intron	ENST00000310441	ENST00000511294		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
In-frame	ENST00000369984	ENST00000273854		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
Frame-shit	ENST00000369984	ENST00000432638		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
In-frame	ENST00000369984	ENST00000354839		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
5CDS-intron	ENST00000369984	ENST00000511294		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
In-frame	ENST00000354233	ENST00000273854		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
Frame-shit	ENST00000354233	ENST00000432638		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
In-frame	ENST00000354233	ENST00000354839		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
5CDS-intron	ENST00000354233	ENST00000511294		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
intron-3CDS	ENST00000461098	ENST00000273854		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
intron-3CDS	ENST00000461098	ENST00000432638		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
intron-3CDS	ENST00000461098	ENST00000354839		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
intron-intron	ENST00000461098	ENST00000511294		TCGA	RV	LUSC	TCGA-LA-A446-01A	HCFC1	chrX	153236099	-	EPHA5	chr4	66189937	-
5CDS-intron	ENST00000443617	ENST00000540797		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000443617	ENST00000380324		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-5UTR	ENST00000443617	ENST00000268049		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000443617	ENST00000536001		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000443617	ENST00000539772		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000443617	ENST00000558285		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000443617	ENST00000559711		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000443617	ENST00000558218		TCGA	RV	LUSC	TCGA-77-8139-01A	HERC1	chr15	63961737	-	USP3	chr15	63821213	+
5CDS-intron	ENST00000458501	ENST00000520258		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
5CDS-intron	ENST00000458501	ENST00000396987		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
5CDS-intron	ENST00000379644	ENST00000520258		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
5CDS-intron	ENST00000379644	ENST00000396987		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
intron-intron	ENST00000297798	ENST00000520258		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
intron-intron	ENST00000297798	ENST00000396987		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
intron-intron	ENST00000521576	ENST00000520258		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
intron-intron	ENST00000521576	ENST00000396987		TCGA	RV	LUSC	TCGA-63-7022-01A	HGSNAT	chr8	43024385	+	AGPAT6	chr8	41466935	+
In-frame	ENST00000370152	ENST00000263174		TCGA	RV	LUSC	TCGA-77-7139-01A	HIAT1	chr1	100535241	+	PALMD	chr1	100127875	+
In-frame	ENST00000370152	ENST00000605497		TCGA	RV	LUSC	TCGA-77-7139-01A	HIAT1	chr1	100535241	+	PALMD	chr1	100127875	+
5CDS-5UTR	ENST00000392332	ENST00000392328		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-5UTR	ENST00000392332	ENST00000281416		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-intron	ENST00000392332	ENST00000535751		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-intron	ENST00000392332	ENST00000489793		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-5UTR	ENST00000359678	ENST00000392328		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-5UTR	ENST00000359678	ENST00000281416		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-intron	ENST00000359678	ENST00000535751		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-intron	ENST00000359678	ENST00000489793		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-5UTR	ENST00000410045	ENST00000392328		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-5UTR	ENST00000410045	ENST00000281416		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-intron	ENST00000410045	ENST00000535751		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-intron	ENST00000410045	ENST00000489793		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
intron-5UTR	ENST00000486981	ENST00000392328		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
intron-5UTR	ENST00000486981	ENST00000281416		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
intron-intron	ENST00000486981	ENST00000535751		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
intron-intron	ENST00000486981	ENST00000489793		TCGA	RV	LUSC	TCGA-96-7544-01A	HIBCH	chr2	191109613	-	MFSD6	chr2	191300703	+
5CDS-5UTR	ENST00000316485	ENST00000460241		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
5CDS-intron	ENST00000316485	ENST00000315170		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
5CDS-5UTR	ENST00000371158	ENST00000460241		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
5CDS-intron	ENST00000371158	ENST00000315170		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
intron-5UTR	ENST00000543708	ENST00000460241		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
intron-intron	ENST00000543708	ENST00000315170		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
intron-5UTR	ENST00000545929	ENST00000460241		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
intron-intron	ENST00000545929	ENST00000315170		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
intron-5UTR	ENST00000472512	ENST00000460241		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
intron-intron	ENST00000472512	ENST00000315170		TCGA	RV	LUSC	TCGA-22-4601-01A	INADL	chr1	62393501	+	PRSS50	chr3	46761493	-
In-frame	ENST00000320394	ENST00000399410		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000320394	ENST00000349029		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000320394	ENST00000351154		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000320394	ENST00000399408		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000320394	ENST00000345148		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000320394	ENST00000346370		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
5CDS-intron	ENST00000320394	ENST00000576557		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000564186	ENST00000399410		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000564186	ENST00000349029		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000564186	ENST00000351154		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000564186	ENST00000399408		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000564186	ENST00000345148		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000564186	ENST00000346370		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
5CDS-intron	ENST00000564186	ENST00000576557		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000541926	ENST00000399410		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000541926	ENST00000349029		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000541926	ENST00000351154		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000541926	ENST00000399408		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000541926	ENST00000345148		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000541926	ENST00000346370		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
5CDS-intron	ENST00000541926	ENST00000576557		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000433597	ENST00000399410		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000433597	ENST00000349029		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000433597	ENST00000351154		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000433597	ENST00000399408		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000433597	ENST00000345148		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
In-frame	ENST00000433597	ENST00000346370		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
5CDS-intron	ENST00000433597	ENST00000576557		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-3CDS	ENST00000562762	ENST00000399410		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-3CDS	ENST00000562762	ENST00000349029		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-3CDS	ENST00000562762	ENST00000351154		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-3CDS	ENST00000562762	ENST00000399408		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-3CDS	ENST00000562762	ENST00000345148		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-3CDS	ENST00000562762	ENST00000346370		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
intron-intron	ENST00000562762	ENST00000576557		TCGA	RV	LUSC	TCGA-43-5670-01A	IQCK	chr16	19746772	+	ABCC1	chr16	16126966	+
5UTR-3CDS	ENST00000393593	ENST00000378531		TCGA	RV	LUSC	TCGA-94-8491-01A	IRF2	chr4	185395533	-	MORN1	chr1	2253018	-
5UTR-intron	ENST00000393593	ENST00000606372		TCGA	RV	LUSC	TCGA-94-8491-01A	IRF2	chr4	185395533	-	MORN1	chr1	2253018	-
5UTR-intron	ENST00000393593	ENST00000378529		TCGA	RV	LUSC	TCGA-94-8491-01A	IRF2	chr4	185395533	-	MORN1	chr1	2253018	-
5UTR-3CDS	ENST00000512020	ENST00000378531		TCGA	RV	LUSC	TCGA-94-8491-01A	IRF2	chr4	185395533	-	MORN1	chr1	2253018	-
5UTR-intron	ENST00000512020	ENST00000606372		TCGA	RV	LUSC	TCGA-94-8491-01A	IRF2	chr4	185395533	-	MORN1	chr1	2253018	-
5UTR-intron	ENST00000512020	ENST00000378529		TCGA	RV	LUSC	TCGA-94-8491-01A	IRF2	chr4	185395533	-	MORN1	chr1	2253018	-
Frame-shit	ENST00000293379	ENST00000552397		TCGA	RV	LUSC	TCGA-39-5035-01A	ITGA5	chr12	54795157	-	GTSF1	chr12	54858951	-
Frame-shit	ENST00000293379	ENST00000305879		TCGA	RV	LUSC	TCGA-39-5035-01A	ITGA5	chr12	54795157	-	GTSF1	chr12	54858951	-
5CDS-intron	ENST00000293379	ENST00000552395		TCGA	RV	LUSC	TCGA-39-5035-01A	ITGA5	chr12	54795157	-	GTSF1	chr12	54858951	-
intron-3CDS	ENST00000547744	ENST00000552397		TCGA	RV	LUSC	TCGA-39-5035-01A	ITGA5	chr12	54795157	-	GTSF1	chr12	54858951	-
intron-3CDS	ENST00000547744	ENST00000305879		TCGA	RV	LUSC	TCGA-39-5035-01A	ITGA5	chr12	54795157	-	GTSF1	chr12	54858951	-
intron-intron	ENST00000547744	ENST00000552395		TCGA	RV	LUSC	TCGA-39-5035-01A	ITGA5	chr12	54795157	-	GTSF1	chr12	54858951	-
intron-3CDS	ENST00000579662	ENST00000331427		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000579662	ENST00000580223		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000339591	ENST00000331427		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000339591	ENST00000580223		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000200181	ENST00000331427		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000200181	ENST00000580223		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000450894	ENST00000331427		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000450894	ENST00000580223		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000449880	ENST00000331427		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000449880	ENST00000580223		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000584558	ENST00000331427		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000584558	ENST00000580223		TCGA	RV	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717692	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000302640	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000302640	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000302640	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000302640	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000302640	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000302640	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-3CDS	ENST00000354582	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000354582	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000354582	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000354582	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000354582	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000354582	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-3CDS	ENST00000423119	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000423119	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000423119	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000423119	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000423119	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000423119	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-3CDS	ENST00000456211	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000456211	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000456211	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000456211	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000456211	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000456211	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-3CDS	ENST00000357086	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000357086	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000357086	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000357086	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000357086	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000357086	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-3CDS	ENST00000544951	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000544951	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000544951	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000544951	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000544951	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
5UTR-intron	ENST00000544951	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-3CDS	ENST00000443694	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000443694	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000443694	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000443694	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000443694	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000443694	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-3CDS	ENST00000463980	ENST00000534863		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000463980	ENST00000470751		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000463980	ENST00000272902		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000463980	ENST00000383843		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000463980	ENST00000458465		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000463980	ENST00000405420		TCGA	RV	LUSC	TCGA-22-5477-01A	ITPR1	chr3	4536190	+	SUMF1	chr3	4110429	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5479-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	LUSC	TCGA-56-8083-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246093239	-
Frame-shit	ENST00000450485	ENST00000319080		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000450485	ENST00000538698		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000450485	ENST00000377037		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000450485	ENST00000535996		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
Frame-shit	ENST00000333479	ENST00000319080		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000333479	ENST00000538698		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000333479	ENST00000377037		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000333479	ENST00000535996		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-3CDS	ENST00000545065	ENST00000319080		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-intron	ENST00000545065	ENST00000538698		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-intron	ENST00000545065	ENST00000377037		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-intron	ENST00000545065	ENST00000535996		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
Frame-shit	ENST00000537348	ENST00000319080		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000537348	ENST00000538698		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000537348	ENST00000377037		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000537348	ENST00000535996		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5UTR-3CDS	ENST00000436959	ENST00000319080		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5UTR-intron	ENST00000436959	ENST00000538698		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5UTR-intron	ENST00000436959	ENST00000377037		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
5UTR-intron	ENST00000436959	ENST00000535996		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-3CDS	ENST00000534995	ENST00000319080		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-intron	ENST00000534995	ENST00000538698		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-intron	ENST00000534995	ENST00000377037		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-intron	ENST00000534995	ENST00000535996		TCGA	RV	LUSC	TCGA-34-5232-01A	KNTC1	chr12	123100073	+	MLXIP	chr12	122611803	+
intron-3CDS	ENST00000465039	ENST00000265537		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
intron-3CDS	ENST00000465039	ENST00000415258		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
intron-3CDS	ENST00000465039	ENST00000414984		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
intron-intron	ENST00000465039	ENST00000467936		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
Frame-shit	ENST00000440097	ENST00000265537		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
Frame-shit	ENST00000440097	ENST00000415258		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
Frame-shit	ENST00000440097	ENST00000414984		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
5CDS-intron	ENST00000440097	ENST00000467936		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
Frame-shit	ENST00000273317	ENST00000265537		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
Frame-shit	ENST00000273317	ENST00000415258		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
Frame-shit	ENST00000273317	ENST00000414984		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
5CDS-intron	ENST00000273317	ENST00000467936		TCGA	RV	LUSC	TCGA-68-8251-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45488383	+
5CDS-3UTR	ENST00000264963	ENST00000457909		TCGA	RV	LUSC	TCGA-66-2787-01A	LMAN2L	chr2	97399256	-	FER1L5	chr2	97370205	+
5CDS-3UTR	ENST00000377079	ENST00000457909		TCGA	RV	LUSC	TCGA-66-2787-01A	LMAN2L	chr2	97399256	-	FER1L5	chr2	97370205	+
intron-3UTR	ENST00000426463	ENST00000457909		TCGA	RV	LUSC	TCGA-66-2787-01A	LMAN2L	chr2	97399256	-	FER1L5	chr2	97370205	+
5CDS-3UTR	ENST00000537039	ENST00000457909		TCGA	RV	LUSC	TCGA-66-2787-01A	LMAN2L	chr2	97399256	-	FER1L5	chr2	97370205	+
intron-3UTR	ENST00000534882	ENST00000457909		TCGA	RV	LUSC	TCGA-66-2787-01A	LMAN2L	chr2	97399256	-	FER1L5	chr2	97370205	+
Frame-shit	ENST00000433346	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
5CDS-intron	ENST00000433346	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
intron-3CDS	ENST00000449039	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
intron-intron	ENST00000449039	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000007969	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
5CDS-intron	ENST00000007969	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000323702	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
5CDS-intron	ENST00000323702	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000443597	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
5CDS-intron	ENST00000443597	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000436789	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
5CDS-intron	ENST00000436789	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000429740	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
5CDS-intron	ENST00000429740	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	LRRC23	chr12	7015826	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000366919	ENST00000283309		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000366919	ENST00000432403		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000366919	ENST00000440994		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000366919	ENST00000537786		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
Frame-shit	ENST00000392142	ENST00000283309		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000392142	ENST00000432403		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000392142	ENST00000440994		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000392142	ENST00000537786		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
Frame-shit	ENST00000348824	ENST00000283309		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000348824	ENST00000432403		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000348824	ENST00000440994		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000348824	ENST00000537786		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
Frame-shit	ENST00000366920	ENST00000283309		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000366920	ENST00000432403		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000366920	ENST00000440994		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
5CDS-intron	ENST00000366920	ENST00000537786		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
intron-3CDS	ENST00000446500	ENST00000283309		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
intron-intron	ENST00000446500	ENST00000432403		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
intron-intron	ENST00000446500	ENST00000440994		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
intron-intron	ENST00000446500	ENST00000537786		TCGA	RV	LUSC	TCGA-NK-A5CR-01A	MAP3K4	chr6	161413115	+	FRMD1	chr6	168479704	-
Frame-shit	ENST00000440884	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000440884	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000440884	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000440884	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
Frame-shit	ENST00000416682	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000416682	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000416682	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000416682	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
Frame-shit	ENST00000429436	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000429436	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000429436	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000429436	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
Frame-shit	ENST00000303622	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000303622	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000303622	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000303622	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
Frame-shit	ENST00000216288	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000216288	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000216288	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000216288	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
Frame-shit	ENST00000553942	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000553942	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000553942	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000553942	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
Frame-shit	ENST00000335102	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000335102	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000335102	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
5CDS-5UTR	ENST00000335102	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
intron-3CDS	ENST00000561071	ENST00000557325		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
intron-5UTR	ENST00000561071	ENST00000334696		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
intron-5UTR	ENST00000561071	ENST00000556242		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
intron-5UTR	ENST00000561071	ENST00000554664		TCGA	RV	LUSC	TCGA-18-3411-01A	MARK3	chr14	103946827	+	ENTPD5	chr14	74482633	-
In-frame	ENST00000256186	ENST00000370551		TCGA	RV	LUSC	TCGA-66-2790-01A	MICALCL	chr11	12316404	+	HS2ST1	chr1	87538617	+
In-frame	ENST00000256186	ENST00000370550		TCGA	RV	LUSC	TCGA-66-2790-01A	MICALCL	chr11	12316404	+	HS2ST1	chr1	87538617	+
In-frame	ENST00000256186	ENST00000356813		TCGA	RV	LUSC	TCGA-66-2790-01A	MICALCL	chr11	12316404	+	HS2ST1	chr1	87538617	+
intron-3CDS	ENST00000529028	ENST00000370551		TCGA	RV	LUSC	TCGA-66-2790-01A	MICALCL	chr11	12316404	+	HS2ST1	chr1	87538617	+
intron-3CDS	ENST00000529028	ENST00000370550		TCGA	RV	LUSC	TCGA-66-2790-01A	MICALCL	chr11	12316404	+	HS2ST1	chr1	87538617	+
intron-3CDS	ENST00000529028	ENST00000356813		TCGA	RV	LUSC	TCGA-66-2790-01A	MICALCL	chr11	12316404	+	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000325102	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000325102	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000325102	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000245551	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000245551	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000245551	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000579297	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000579297	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000579297	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000577542	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000577542	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000577542	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000580571	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000580571	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000580571	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000579119	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000579119	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000579119	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000578305	ENST00000392650		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
Frame-shit	ENST00000578305	ENST00000388726		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-intron	ENST00000578305	ENST00000410094		TCGA	RV	LUSC	TCGA-43-2581-01A	MIF4GD	chr17	73266195	-	SDK2	chr17	71443887	-
5CDS-3UTR	ENST00000400485	ENST00000479810		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
5CDS-3UTR	ENST00000400485	ENST00000357985		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
5CDS-3UTR	ENST00000400485	ENST00000398647		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
5CDS-3UTR	ENST00000400485	ENST00000398652		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
5CDS-3UTR	ENST00000400485	ENST00000398646		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
3UTR-3UTR	ENST00000487909	ENST00000479810		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
3UTR-3UTR	ENST00000487909	ENST00000357985		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
3UTR-3UTR	ENST00000487909	ENST00000398647		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
3UTR-3UTR	ENST00000487909	ENST00000398652		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
3UTR-3UTR	ENST00000487909	ENST00000398646		TCGA	RV	LUSC	TCGA-37-3792-01A	MORC3	chr21	37744829	+	FAM3B	chr21	42710305	+
Frame-shit	ENST00000338779	ENST00000261776		TCGA	RV	LUSC	TCGA-66-2758-01A	MTSS1L	chr16	70708209	-	VAC14	chr16	70732714	-
5CDS-intron	ENST00000338779	ENST00000571759		TCGA	RV	LUSC	TCGA-66-2758-01A	MTSS1L	chr16	70708209	-	VAC14	chr16	70732714	-
5CDS-5UTR	ENST00000338779	ENST00000536184		TCGA	RV	LUSC	TCGA-66-2758-01A	MTSS1L	chr16	70708209	-	VAC14	chr16	70732714	-
Frame-shit	ENST00000349841	ENST00000457714		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000349841	ENST00000361589		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000349841	ENST00000401917		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000349841	ENST00000545397		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000349841	ENST00000466350		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000392733	ENST00000457714		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000392733	ENST00000361589		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000392733	ENST00000401917		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000392733	ENST00000545397		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000392733	ENST00000466350		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000356716	ENST00000457714		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000356716	ENST00000361589		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000356716	ENST00000401917		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000356716	ENST00000545397		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000356716	ENST00000466350		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000544106	ENST00000457714		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000544106	ENST00000361589		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000544106	ENST00000401917		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000544106	ENST00000545397		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000544106	ENST00000466350		TCGA	RV	LUSC	TCGA-56-7730-01A	MYNN	chr3	169492349	+	NLGN1	chr3	173525470	+
5UTR-5UTR	ENST00000360149	ENST00000361317		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
5UTR-5UTR	ENST00000360149	ENST00000343484		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
5UTR-5UTR	ENST00000360149	ENST00000395053		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
5UTR-3UTR	ENST00000360149	ENST00000465111		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-5UTR	ENST00000536311	ENST00000361317		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-5UTR	ENST00000536311	ENST00000343484		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-5UTR	ENST00000536311	ENST00000395053		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-3UTR	ENST00000536311	ENST00000465111		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-5UTR	ENST00000328439	ENST00000361317		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-5UTR	ENST00000328439	ENST00000343484		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-5UTR	ENST00000328439	ENST00000395053		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
intron-3UTR	ENST00000328439	ENST00000465111		TCGA	RV	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62697829	+
Frame-shit	ENST00000594234	ENST00000292574		TCGA	RV	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080883	-	CCDC105	chr19	15131273	+
Frame-shit	ENST00000599369	ENST00000292574		TCGA	RV	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080883	-	CCDC105	chr19	15131273	+
Frame-shit	ENST00000215057	ENST00000292574		TCGA	RV	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080883	-	CCDC105	chr19	15131273	+
Frame-shit	ENST00000594108	ENST00000292574		TCGA	RV	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080883	-	CCDC105	chr19	15131273	+
In-frame	ENST00000454872	ENST00000409261		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
In-frame	ENST00000454872	ENST00000409213		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
In-frame	ENST00000454872	ENST00000405974		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
In-frame	ENST00000454872	ENST00000317721		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
5CDS-intron	ENST00000454872	ENST00000473859		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
3UTR-3CDS	ENST00000473253	ENST00000409261		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
3UTR-3CDS	ENST00000473253	ENST00000409213		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
3UTR-3CDS	ENST00000473253	ENST00000405974		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
3UTR-3CDS	ENST00000473253	ENST00000317721		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
3UTR-intron	ENST00000473253	ENST00000473859		TCGA	RV	LUSC	TCGA-70-6722-01A	NAALADL2	chr3	175189546	+	NCKAP5	chr2	133626547	-
In-frame	ENST00000409581	ENST00000409843		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000409581	ENST00000409830		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000410051		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000479019		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000409805		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000359135		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000409580		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000409637		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409581	ENST00000409609		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000337386	ENST00000409843		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000337386	ENST00000409830		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000410051		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000479019		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000409805		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000359135		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000409580		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000409637		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000337386	ENST00000409609		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000357215	ENST00000409843		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000357215	ENST00000409830		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000410051		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000479019		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000409805		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000359135		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000409580		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000409637		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000357215	ENST00000409609		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000409641	ENST00000409843		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000409641	ENST00000409830		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000410051		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000479019		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000409805		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000359135		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000409580		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000409637		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000409641	ENST00000409609		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000545490	ENST00000409843		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
In-frame	ENST00000545490	ENST00000409830		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000410051		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000479019		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000409805		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000359135		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000409580		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000409637		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-intron	ENST00000545490	ENST00000409609		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-3CDS	ENST00000484774	ENST00000409843		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-3CDS	ENST00000484774	ENST00000409830		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000410051		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000479019		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000409805		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000359135		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000409580		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000409637		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
intron-intron	ENST00000484774	ENST00000409609		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	NAB1	chr2	191537878	+	GULP1	chr2	189448992	+
5CDS-5UTR	ENST00000400546	ENST00000358502		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-5UTR	ENST00000400546	ENST00000249066		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-5UTR	ENST00000400546	ENST00000451256		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-intron	ENST00000400546	ENST00000476579		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-5UTR	ENST00000284894	ENST00000358502		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-5UTR	ENST00000284894	ENST00000249066		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-5UTR	ENST00000284894	ENST00000451256		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
5CDS-intron	ENST00000284894	ENST00000476579		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-5UTR	ENST00000535285	ENST00000358502		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-5UTR	ENST00000535285	ENST00000249066		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-5UTR	ENST00000535285	ENST00000451256		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-intron	ENST00000535285	ENST00000476579		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-5UTR	ENST00000486367	ENST00000358502		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-5UTR	ENST00000486367	ENST00000249066		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-5UTR	ENST00000486367	ENST00000451256		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
intron-intron	ENST00000486367	ENST00000476579		TCGA	RV	LUSC	TCGA-22-A5C4-01A	NCAM2	chr21	22370936	+	APOL2	chr22	36629501	-
Frame-shit	ENST00000409261	ENST00000436443		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000409261	ENST00000342788		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000409261	ENST00000402597		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
5CDS-5UTR	ENST00000409261	ENST00000484474		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000409213	ENST00000436443		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000409213	ENST00000342788		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000409213	ENST00000402597		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
5CDS-5UTR	ENST00000409213	ENST00000484474		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000405974	ENST00000436443		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000405974	ENST00000342788		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000405974	ENST00000402597		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
5CDS-5UTR	ENST00000405974	ENST00000484474		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000317721	ENST00000436443		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000317721	ENST00000342788		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
Frame-shit	ENST00000317721	ENST00000402597		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
5CDS-5UTR	ENST00000317721	ENST00000484474		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
intron-3CDS	ENST00000473859	ENST00000436443		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
intron-3CDS	ENST00000473859	ENST00000342788		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
intron-3CDS	ENST00000473859	ENST00000402597		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
intron-5UTR	ENST00000473859	ENST00000484474		TCGA	RV	LUSC	TCGA-58-8391-01A	NCKAP5	chr2	133887550	-	ERBB4	chr2	212812341	-
5UTR-3UTR	ENST00000406961	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000406961	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000406961	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000406961	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
intron-3UTR	ENST00000469850	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000469850	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000469850	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
intron-5UTR	ENST00000469850	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-3UTR	ENST00000405141	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000405141	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000405141	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000405141	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-3UTR	ENST00000407230	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000407230	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000407230	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000407230	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-3UTR	ENST00000538539	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000538539	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000538539	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000538539	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-3UTR	ENST00000288599	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000288599	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000288599	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000288599	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-3UTR	ENST00000348332	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000348332	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000348332	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000348332	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-3UTR	ENST00000395856	ENST00000446425		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000395856	ENST00000404924		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000395856	ENST00000309033		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
5UTR-5UTR	ENST00000395856	ENST00000535786		TCGA	RV	LUSC	TCGA-85-A4JB-01A	NCOA1	chr2	24807429	+	UBXN2A	chr2	24181171	+
Frame-shit	ENST00000341724	ENST00000357410		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000341724	ENST00000327619		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000341724	ENST00000497428		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000341724	ENST00000317304		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000372004	ENST00000357410		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000372004	ENST00000327619		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000372004	ENST00000497428		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000372004	ENST00000317304		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371998	ENST00000357410		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371998	ENST00000327619		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371998	ENST00000497428		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371998	ENST00000317304		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371997	ENST00000357410		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371997	ENST00000327619		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371997	ENST00000497428		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371997	ENST00000317304		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
intron-3CDS	ENST00000497292	ENST00000357410		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
intron-3CDS	ENST00000497292	ENST00000327619		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
intron-intron	ENST00000497292	ENST00000497428		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
intron-intron	ENST00000497292	ENST00000317304		TCGA	RV	LUSC	TCGA-37-4133-01A	NCOA3	chr20	46271128	+	EYA2	chr20	45700824	+
In-frame	ENST00000438493	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000438493	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000438493	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
In-frame	ENST00000452682	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000452682	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000452682	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
3UTR-3CDS	ENST00000498586	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
3UTR-3UTR	ENST00000498586	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
3UTR-3UTR	ENST00000498586	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
In-frame	ENST00000430396	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000430396	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000430396	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
In-frame	ENST00000374087	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000374087	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000374087	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5UTR-3CDS	ENST00000414907	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000414907	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5UTR-3UTR	ENST00000414907	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
In-frame	ENST00000344348	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000344348	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000344348	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
In-frame	ENST00000374082	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000374082	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000374082	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
In-frame	ENST00000443446	ENST00000358559		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000443446	ENST00000474170		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000443446	ENST00000298239		TCGA	RV	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51581378	+	MSMB	chr10	51555731	+
Frame-shit	ENST00000356918	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000356918	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000510769	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000510769	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000429253	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000429253	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000510688	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000510688	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000511262	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000511262	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000383366	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000383366	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000412440	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000412440	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000507910	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000507910	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000508196	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
Frame-shit	ENST00000508196	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
3UTR-3CDS	ENST00000426022	ENST00000358543		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
3UTR-3CDS	ENST00000426022	ENST00000523939		TCGA	RV	LUSC	TCGA-56-8622-01A	NEK11	chr3	130852800	+	FAM150A	chr8	53455005	-
5UTR-5UTR	ENST00000367385	ENST00000357681		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367385	ENST00000391954		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367385	ENST00000367218		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367385	ENST00000367219		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-intron	ENST00000367385	ENST00000341360		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-intron	ENST00000367385	ENST00000466407		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000538004	ENST00000357681		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000538004	ENST00000391954		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000538004	ENST00000367218		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000538004	ENST00000367219		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-intron	ENST00000538004	ENST00000341360		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-intron	ENST00000538004	ENST00000466407		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367383	ENST00000357681		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367383	ENST00000391954		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367383	ENST00000367218		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-5UTR	ENST00000367383	ENST00000367219		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-intron	ENST00000367383	ENST00000341360		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
5UTR-intron	ENST00000367383	ENST00000466407		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000417895	ENST00000357681		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000417895	ENST00000391954		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000417895	ENST00000367218		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-5UTR	ENST00000417895	ENST00000367219		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-intron	ENST00000417895	ENST00000341360		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
intron-intron	ENST00000417895	ENST00000466407		TCGA	RV	LUSC	TCGA-39-5034-01A	NEK7	chr1	198126406	+	ATP2B4	chr1	203651870	+
Frame-shit	ENST00000331134	ENST00000331056		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000331134	ENST00000573076		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000331134	ENST00000574777		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000331134	ENST00000571224		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000331134	ENST00000571004		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000374747	ENST00000331056		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000374747	ENST00000573076		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000374747	ENST00000574777		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000374747	ENST00000571224		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000374747	ENST00000571004		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000539314	ENST00000331056		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000539314	ENST00000573076		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000539314	ENST00000574777		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000539314	ENST00000571224		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000539314	ENST00000571004		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000572760	ENST00000331056		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000572760	ENST00000573076		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000572760	ENST00000574777		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000572760	ENST00000571224		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000572760	ENST00000571004		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000573876	ENST00000331056		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000573876	ENST00000573076		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000573876	ENST00000574777		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000573876	ENST00000571224		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000573876	ENST00000571004		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5UTR-3CDS	ENST00000574344	ENST00000331056		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5UTR-3CDS	ENST00000574344	ENST00000573076		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5UTR-5UTR	ENST00000574344	ENST00000574777		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5UTR-5UTR	ENST00000574344	ENST00000571224		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
5UTR-5UTR	ENST00000574344	ENST00000571004		TCGA	RV	LUSC	TCGA-NC-A5HD-01A	NPLOC4	chr17	79577236	-	PDE6G	chr17	79618715	-
In-frame	ENST00000378466	ENST00000553525		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000555571		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000553530		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000556437		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000355512		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000406236		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000404301		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000407322		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000402788		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000378466	ENST00000343854		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000378466	ENST00000434263		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000378466	ENST00000554782		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000378466	ENST00000553690		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000553525		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000555571		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000553530		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000556437		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000355512		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000406236		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000404301		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000407322		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000402788		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000435556	ENST00000343854		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000435556	ENST00000434263		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000435556	ENST00000554782		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000435556	ENST00000553690		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000553525		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000555571		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000553530		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000556437		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000355512		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000406236		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000404301		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000407322		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000402788		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-3CDS	ENST00000491212	ENST00000343854		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-intron	ENST00000491212	ENST00000434263		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-intron	ENST00000491212	ENST00000554782		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
intron-intron	ENST00000491212	ENST00000553690		TCGA	RV	LUSC	TCGA-94-8491-01A	PANK4	chr1	2442777	-	RGS6	chr14	72818803	+
In-frame	ENST00000246535	ENST00000299505		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PDCD2L	chr19	34895895	+	KIAA0355	chr19	34843552	+
5CDS-intron	ENST00000246535	ENST00000592124		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PDCD2L	chr19	34895895	+	KIAA0355	chr19	34843552	+
5UTR-3CDS	ENST00000587065	ENST00000299505		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PDCD2L	chr19	34895895	+	KIAA0355	chr19	34843552	+
5UTR-intron	ENST00000587065	ENST00000592124		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PDCD2L	chr19	34895895	+	KIAA0355	chr19	34843552	+
5CDS-5UTR	ENST00000592685	ENST00000333430		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000592685	ENST00000439028		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000380702	ENST00000333430		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000380702	ENST00000439028		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000352831	ENST00000333430		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000352831	ENST00000439028		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000293683	ENST00000333430		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000293683	ENST00000439028		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000440014	ENST00000333430		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000440014	ENST00000439028		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000344979	ENST00000333430		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000344979	ENST00000439028		TCGA	RV	LUSC	TCGA-22-4613-01A	PDE4A	chr19	10574651	+	S1PR5	chr19	10625705	-
intron-3CDS	ENST00000340635	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000340635	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000340635	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000340635	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000340635	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000340635	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000360047	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000360047	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000360047	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000360047	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000360047	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000360047	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000507116	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000507116	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000507116	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000507116	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000507116	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000507116	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000502484	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000502484	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000546160	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000546160	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000502575	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000502575	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000502575	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000502575	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000502575	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000502575	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000358923	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000358923	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503258	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503258	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000405755	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000405755	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000317118	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000317118	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000515393		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000429576		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000312216		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000505208		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503947	ENST00000514040		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503947	ENST00000505078		TCGA	RV	LUSC	TCGA-22-0940-01A	PDE4D	chr5	59064073	-	MCTP1	chr5	94353188	-
In-frame	ENST00000264555	ENST00000308020		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
5CDS-3UTR	ENST00000264555	ENST00000530087		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
In-frame	ENST00000413872	ENST00000308020		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
5CDS-3UTR	ENST00000413872	ENST00000530087		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
In-frame	ENST00000533464	ENST00000308020		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
5CDS-3UTR	ENST00000533464	ENST00000530087		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
In-frame	ENST00000416188	ENST00000308020		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
5CDS-3UTR	ENST00000416188	ENST00000530087		TCGA	RV	LUSC	TCGA-85-8580-01A	PHRF1	chr11	582081	+	PTDSS2	chr11	479085	+
Frame-shit	ENST00000255882	ENST00000420436		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
Frame-shit	ENST00000255882	ENST00000334029		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
Frame-shit	ENST00000255882	ENST00000357068		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
5UTR-3CDS	ENST00000572273	ENST00000420436		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
5UTR-3CDS	ENST00000572273	ENST00000334029		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
5UTR-3CDS	ENST00000572273	ENST00000357068		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
intron-3CDS	ENST00000414196	ENST00000420436		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
intron-3CDS	ENST00000414196	ENST00000334029		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
intron-3CDS	ENST00000414196	ENST00000357068		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
intron-3CDS	ENST00000466162	ENST00000420436		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
intron-3CDS	ENST00000466162	ENST00000334029		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
intron-3CDS	ENST00000466162	ENST00000357068		TCGA	RV	LUSC	TCGA-77-6842-01A	PI4KA	chr22	21212858	-	PRODH	chr22	18913235	-
5CDS-intron	ENST00000314787	ENST00000416569		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
5CDS-intron	ENST00000314787	ENST00000304437		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
5CDS-intron	ENST00000314787	ENST00000297303		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000426190	ENST00000416569		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000426190	ENST00000304437		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000426190	ENST00000297303		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000519088	ENST00000416569		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000519088	ENST00000304437		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000519088	ENST00000297303		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000520018	ENST00000416569		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000520018	ENST00000304437		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
intron-intron	ENST00000520018	ENST00000297303		TCGA	RV	LUSC	TCGA-68-A59I-01A	PINX1	chr8	10677703	-	XKR6	chr8	11052730	-
5CDS-intron	ENST00000263946	ENST00000513761		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000263946	ENST00000347613		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000263946	ENST00000360642		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000263946	ENST00000504131		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000263946	ENST00000506924		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000367324	ENST00000513761		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000367324	ENST00000347613		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000367324	ENST00000360642		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000367324	ENST00000504131		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000367324	ENST00000506924		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000352845	ENST00000513761		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000352845	ENST00000347613		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000352845	ENST00000360642		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000352845	ENST00000504131		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000352845	ENST00000506924		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000475988	ENST00000513761		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000475988	ENST00000347613		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000475988	ENST00000360642		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000475988	ENST00000504131		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000475988	ENST00000506924		TCGA	RV	LUSC	TCGA-56-7582-01A	PKP1	chr1	201302121	+	CLCN3	chr4	170623929	+
In-frame	ENST00000253925	ENST00000328965		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000253925	ENST00000531220		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000253925	ENST00000534735		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
In-frame	ENST00000389547	ENST00000328965		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000389547	ENST00000531220		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000389547	ENST00000534735		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
intron-3CDS	ENST00000530548	ENST00000328965		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
intron-intron	ENST00000530548	ENST00000531220		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
intron-intron	ENST00000530548	ENST00000534735		TCGA	RV	LUSC	TCGA-33-6738-01A	PPFIA1	chr11	70118542	+	OAF	chr11	120096370	+
5UTR-3CDS	ENST00000334186	ENST00000347528		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000334186	ENST00000289734		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000334186	ENST00000379758		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000334186	ENST00000396942		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000334186	ENST00000396945		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000334186	ENST00000352337		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-3CDS	ENST00000334186	ENST00000265709		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000334186	ENST00000457297		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000334186	ENST00000522231		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000334186	ENST00000522543		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000334186	ENST00000314214		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
5UTR-intron	ENST00000334186	ENST00000521407		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000347528		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000289734		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000379758		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000396942		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000396945		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000352337		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000602351	ENST00000265709		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-intron	ENST00000602351	ENST00000457297		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-intron	ENST00000602351	ENST00000522231		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-intron	ENST00000602351	ENST00000522543		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-intron	ENST00000602351	ENST00000314214		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
intron-intron	ENST00000602351	ENST00000521407		TCGA	RV	LUSC	TCGA-66-2759-01A	PPFIA3	chr19	49622979	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000228705	ENST00000311915		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
Frame-shit	ENST00000228705	ENST00000544871		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
Frame-shit	ENST00000228705	ENST00000398055		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
5CDS-intron	ENST00000228705	ENST00000540673		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000551214	ENST00000311915		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000551214	ENST00000544871		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000551214	ENST00000398055		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
intron-intron	ENST00000551214	ENST00000540673		TCGA	RV	LUSC	TCGA-56-8625-01A	PPM1H	chr12	63328272	-	C12orf66	chr12	64609743	-
In-frame	ENST00000265717	ENST00000271588		TCGA	RV	LUSC	TCGA-22-4593-01A	PRKAR2B	chr7	106710761	+	HMCN1	chr1	185815158	+
In-frame	ENST00000265717	ENST00000367492		TCGA	RV	LUSC	TCGA-22-4593-01A	PRKAR2B	chr7	106710761	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000265717	ENST00000485744		TCGA	RV	LUSC	TCGA-22-4593-01A	PRKAR2B	chr7	106710761	+	HMCN1	chr1	185815158	+
3UTR-3CDS	ENST00000393613	ENST00000271588		TCGA	RV	LUSC	TCGA-22-4593-01A	PRKAR2B	chr7	106710761	+	HMCN1	chr1	185815158	+
3UTR-3CDS	ENST00000393613	ENST00000367492		TCGA	RV	LUSC	TCGA-22-4593-01A	PRKAR2B	chr7	106710761	+	HMCN1	chr1	185815158	+
3UTR-intron	ENST00000393613	ENST00000485744		TCGA	RV	LUSC	TCGA-22-4593-01A	PRKAR2B	chr7	106710761	+	HMCN1	chr1	185815158	+
In-frame	ENST00000413366	ENST00000404826		TCGA	RV	LUSC	TCGA-66-2793-01A	PRKCA	chr17	64641629	+	SDK1	chr7	3990555	+
In-frame	ENST00000413366	ENST00000389531		TCGA	RV	LUSC	TCGA-66-2793-01A	PRKCA	chr17	64641629	+	SDK1	chr7	3990555	+
5CDS-intron	ENST00000413366	ENST00000466611		TCGA	RV	LUSC	TCGA-66-2793-01A	PRKCA	chr17	64641629	+	SDK1	chr7	3990555	+
intron-3CDS	ENST00000583361	ENST00000404826		TCGA	RV	LUSC	TCGA-66-2793-01A	PRKCA	chr17	64641629	+	SDK1	chr7	3990555	+
intron-3CDS	ENST00000583361	ENST00000389531		TCGA	RV	LUSC	TCGA-66-2793-01A	PRKCA	chr17	64641629	+	SDK1	chr7	3990555	+
intron-intron	ENST00000583361	ENST00000466611		TCGA	RV	LUSC	TCGA-66-2793-01A	PRKCA	chr17	64641629	+	SDK1	chr7	3990555	+
Frame-shit	ENST00000532462	ENST00000298355		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000532462	ENST00000338969		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000532462	ENST00000360392		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000532462	ENST00000557456		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
Frame-shit	ENST00000544180	ENST00000298355		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000544180	ENST00000338969		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000544180	ENST00000360392		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000544180	ENST00000557456		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
Frame-shit	ENST00000216392	ENST00000298355		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000216392	ENST00000338969		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000216392	ENST00000360392		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
5CDS-intron	ENST00000216392	ENST00000557456		TCGA	RV	LUSC	TCGA-37-4130-01A	PYGL	chr14	51374989	-	TRIM9	chr14	51444071	-
Frame-shit	ENST00000430083	ENST00000226279		TCGA	RV	LUSC	TCGA-56-5898-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
intron-3CDS	ENST00000328444	ENST00000226279		TCGA	RV	LUSC	TCGA-56-5898-01A	RNASE10	chr14	20974178	+	CD38	chr4	15818134	+
In-frame	ENST00000399799	ENST00000289119		TCGA	RV	LUSC	TCGA-85-8048-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19244191	-
5CDS-intron	ENST00000399799	ENST00000580981		TCGA	RV	LUSC	TCGA-85-8048-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19244191	-
5CDS-5UTR	ENST00000399799	ENST00000578270		TCGA	RV	LUSC	TCGA-85-8048-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19244191	-
5CDS-5UTR	ENST00000399799	ENST00000579875		TCGA	RV	LUSC	TCGA-85-8048-01A	ROCK1	chr18	18690779	-	ABHD3	chr18	19244191	-
Frame-shit	ENST00000466444	ENST00000416171		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
In-frame	ENST00000466444	ENST00000368597		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
Frame-shit	ENST00000466444	ENST00000405399		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
Frame-shit	ENST00000466444	ENST00000368596		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000392526	ENST00000416171		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000392526	ENST00000368597		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000392526	ENST00000405399		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000392526	ENST00000368596		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000487832	ENST00000416171		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000487832	ENST00000368597		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000487832	ENST00000405399		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
5UTR-3CDS	ENST00000487832	ENST00000368596		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
intron-3CDS	ENST00000517800	ENST00000416171		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
intron-3CDS	ENST00000517800	ENST00000368597		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
intron-3CDS	ENST00000517800	ENST00000405399		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
intron-3CDS	ENST00000517800	ENST00000368596		TCGA	RV	LUSC	TCGA-77-A5GH-01A	RWDD1	chr6	116906020	+	FAM26D	chr6	116878988	+
Frame-shit	ENST00000399215	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000399215	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000399215	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5UTR-3CDS	ENST00000481477	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5UTR-intron	ENST00000481477	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5UTR-intron	ENST00000481477	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
Frame-shit	ENST00000399212	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000399212	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000399212	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
Frame-shit	ENST00000332131	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000332131	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
5CDS-intron	ENST00000332131	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-3CDS	ENST00000399205	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399205	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399205	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-3CDS	ENST00000399208	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399208	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399208	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-3CDS	ENST00000399201	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399201	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399201	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-3CDS	ENST00000399207	ENST00000306851		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399207	ENST00000237019		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
intron-intron	ENST00000399207	ENST00000383131		TCGA	RV	LUSC	TCGA-46-6025-01A	SETD4	chr21	37412873	-	B4GALT6	chr18	29246335	-
Frame-shit	ENST00000358065	ENST00000503581		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000358065	ENST00000370621		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000358065	ENST00000370616		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000358065	ENST00000393380		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000358065	ENST00000342421		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000358065	ENST00000370618		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
5CDS-intron	ENST00000358065	ENST00000486069		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000430981	ENST00000503581		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000430981	ENST00000370621		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000430981	ENST00000370616		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000430981	ENST00000393380		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000430981	ENST00000342421		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000430981	ENST00000370618		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
5CDS-intron	ENST00000430981	ENST00000486069		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000425863	ENST00000503581		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000425863	ENST00000370621		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000425863	ENST00000370616		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000425863	ENST00000393380		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000425863	ENST00000342421		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
Frame-shit	ENST00000425863	ENST00000370618		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
5CDS-intron	ENST00000425863	ENST00000486069		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-3CDS	ENST00000462115	ENST00000503581		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-3CDS	ENST00000462115	ENST00000370621		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-3CDS	ENST00000462115	ENST00000370616		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-3CDS	ENST00000462115	ENST00000393380		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-3CDS	ENST00000462115	ENST00000342421		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-3CDS	ENST00000462115	ENST00000370618		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
intron-intron	ENST00000462115	ENST00000486069		TCGA	RV	LUSC	TCGA-98-A53I-01A	SETMAR	chr3	4345210	+	EYS	chr6	66115260	-
In-frame	ENST00000381431	ENST00000295213		TCGA	RV	LUSC	TCGA-66-2787-01A	SGCB	chr4	52899597	-	SPATA18	chr4	52926585	+
In-frame	ENST00000381431	ENST00000419395		TCGA	RV	LUSC	TCGA-66-2787-01A	SGCB	chr4	52899597	-	SPATA18	chr4	52926585	+
5CDS-intron	ENST00000381431	ENST00000506829		TCGA	RV	LUSC	TCGA-66-2787-01A	SGCB	chr4	52899597	-	SPATA18	chr4	52926585	+
intron-3CDS	ENST00000535450	ENST00000295213		TCGA	RV	LUSC	TCGA-66-2787-01A	SGCB	chr4	52899597	-	SPATA18	chr4	52926585	+
intron-3CDS	ENST00000535450	ENST00000419395		TCGA	RV	LUSC	TCGA-66-2787-01A	SGCB	chr4	52899597	-	SPATA18	chr4	52926585	+
intron-intron	ENST00000535450	ENST00000506829		TCGA	RV	LUSC	TCGA-66-2787-01A	SGCB	chr4	52899597	-	SPATA18	chr4	52926585	+
Frame-shit	ENST00000358026	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000358026	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000358026	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000358026	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000344626	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000344626	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000344626	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000344626	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000429416	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000429416	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000429416	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000429416	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000541122	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000541122	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000541122	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000541122	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000589677	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000589677	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000589677	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000589677	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000444061	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000444061	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000444061	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000444061	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000590574	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000590574	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000590574	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000590574	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000413806	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000413806	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000413806	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000413806	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000450717	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000450717	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
Frame-shit	ENST00000450717	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
5CDS-3UTR	ENST00000450717	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
intron-3CDS	ENST00000538456	ENST00000159111		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
intron-3CDS	ENST00000538456	ENST00000381759		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
intron-3CDS	ENST00000538456	ENST00000536461		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
intron-3UTR	ENST00000538456	ENST00000592175		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	SMARCA4	chr19	11100119	+	KDM4B	chr19	5071021	+
In-frame	ENST00000575142	ENST00000358183		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000414043		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000361571		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000572543		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000381311		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000575142	ENST00000348066		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5CDS-5UTR	ENST00000575142	ENST00000571831		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000358183		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000414043		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000361571		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000572543		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000381311		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
In-frame	ENST00000206020	ENST00000348066		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5CDS-5UTR	ENST00000206020	ENST00000571831		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000358183		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000414043		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000361571		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000572543		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000381311		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-3CDS	ENST00000573366	ENST00000348066		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
intron-5UTR	ENST00000573366	ENST00000571831		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000358183		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000414043		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000361571		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000572543		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000381311		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-3CDS	ENST00000571023	ENST00000348066		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
5UTR-5UTR	ENST00000571023	ENST00000571831		TCGA	RV	LUSC	TCGA-22-4593-01A	SPAG7	chr17	4871015	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000282074	ENST00000356918		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000510769		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000429253		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000510688		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000511262		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000383366		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000412440		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000507910		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
Frame-shit	ENST00000282074	ENST00000508196		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5CDS-3UTR	ENST00000282074	ENST00000426022		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000356918		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000510769		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000429253		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000510688		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000511262		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000383366		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000412440		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000507910		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3CDS	ENST00000472216	ENST00000508196		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
5UTR-3UTR	ENST00000472216	ENST00000426022		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SPC25	chr2	169745736	-	NEK11	chr3	130851589	+
In-frame	ENST00000300737	ENST00000256474		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
In-frame	ENST00000300737	ENST00000345392		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
5CDS-3UTR	ENST00000300737	ENST00000477538		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
In-frame	ENST00000527651	ENST00000256474		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
In-frame	ENST00000527651	ENST00000345392		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
5CDS-3UTR	ENST00000527651	ENST00000477538		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
intron-3CDS	ENST00000527484	ENST00000256474		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
intron-3CDS	ENST00000527484	ENST00000345392		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
intron-3UTR	ENST00000527484	ENST00000477538		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
intron-3CDS	ENST00000533977	ENST00000256474		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
intron-3CDS	ENST00000533977	ENST00000345392		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
intron-3UTR	ENST00000533977	ENST00000477538		TCGA	RV	LUSC	TCGA-66-2766-01A	STIM1	chr11	3877639	+	VHL	chr3	10191471	+
Frame-shit	ENST00000339208	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000339208	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000339208	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000339208	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000339208	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000346661	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000346661	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000346661	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000346661	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000346661	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000345615	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000345615	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000345615	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000345615	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000345615	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000502449	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000502449	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000502449	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000502449	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000502449	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000591288	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000591288	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000591288	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000591288	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000591288	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000394378	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000394378	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000394378	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000394378	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000394378	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000585472	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000585472	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000585472	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000585472	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
5CDS-intron	ENST00000585472	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
intron-3CDS	ENST00000588194	ENST00000464233		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
intron-3CDS	ENST00000588194	ENST00000436010		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
intron-3CDS	ENST00000588194	ENST00000495273		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
intron-3CDS	ENST00000588194	ENST00000467549		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
intron-intron	ENST00000588194	ENST00000466906		TCGA	RV	LUSC	TCGA-43-A475-01A	SYNRG	chr17	35956270	-	ROBO1	chr3	78988077	-
Frame-shit	ENST00000225235	ENST00000371547		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
Frame-shit	ENST00000225235	ENST00000371552		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
Frame-shit	ENST00000225235	ENST00000371543		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
Frame-shit	ENST00000225235	ENST00000443748		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
Frame-shit	ENST00000225235	ENST00000260762		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
5CDS-intron	ENST00000225235	ENST00000497262		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
3UTR-3CDS	ENST00000485048	ENST00000371547		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
3UTR-3CDS	ENST00000485048	ENST00000371552		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
3UTR-3CDS	ENST00000485048	ENST00000371543		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
3UTR-3CDS	ENST00000485048	ENST00000443748		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
3UTR-3CDS	ENST00000485048	ENST00000260762		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
3UTR-intron	ENST00000485048	ENST00000497262		TCGA	RV	LUSC	TCGA-37-5819-01A	TBC1D12	chr10	96271411	+	EXOC6	chr10	94653106	+
intron-3CDS	ENST00000447648	ENST00000265069		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
intron-5UTR	ENST00000447648	ENST00000510369		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
intron-3CDS	ENST00000379795	ENST00000265069		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
intron-5UTR	ENST00000379795	ENST00000510369		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
intron-3CDS	ENST00000479975	ENST00000265069		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
intron-5UTR	ENST00000479975	ENST00000510369		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
5UTR-3CDS	ENST00000542604	ENST00000265069		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
5UTR-5UTR	ENST00000542604	ENST00000510369		TCGA	RV	LUSC	TCGA-98-8022-01A	TECPR1	chr7	97880731	-	ZFR	chr5	32364381	-
intron-5UTR	ENST00000541714	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
intron-5UTR	ENST00000539908	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
5UTR-5UTR	ENST00000382008	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
5CDS-5UTR	ENST00000589378	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
intron-5UTR	ENST00000262968	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
intron-5UTR	ENST00000587686	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
intron-5UTR	ENST00000587641	ENST00000306708		TCGA	RV	LUSC	TCGA-66-2766-01A	TJP3	chr19	3721908	+	LRRC8E	chr19	7960484	+
intron-5UTR	ENST00000515518	ENST00000296785		TCGA	RV	LUSC	TCGA-60-2712-01A	TMEM232	chr5	110002929	-	ANKRA2	chr5	72858810	-
5CDS-5UTR	ENST00000429839	ENST00000296785		TCGA	RV	LUSC	TCGA-60-2712-01A	TMEM232	chr5	110002929	-	ANKRA2	chr5	72858810	-
5CDS-5UTR	ENST00000455884	ENST00000296785		TCGA	RV	LUSC	TCGA-60-2712-01A	TMEM232	chr5	110002929	-	ANKRA2	chr5	72858810	-
In-frame	ENST00000340513	ENST00000503581		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
In-frame	ENST00000340513	ENST00000370621		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
In-frame	ENST00000340513	ENST00000370616		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000340513	ENST00000393380		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000340513	ENST00000342421		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000340513	ENST00000370618		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000340513	ENST00000486069		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
In-frame	ENST00000300403	ENST00000503581		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
In-frame	ENST00000300403	ENST00000370621		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
In-frame	ENST00000300403	ENST00000370616		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000300403	ENST00000393380		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000300403	ENST00000342421		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000300403	ENST00000370618		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
5CDS-intron	ENST00000300403	ENST00000486069		TCGA	RV	LUSC	TCGA-60-2706-01A	TPX2	chr20	30347982	+	EYS	chr6	64791895	-
Frame-shit	ENST00000246957	ENST00000262367		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
Frame-shit	ENST00000246957	ENST00000382070		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-3CDS	ENST00000575671	ENST00000262367		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-3CDS	ENST00000575671	ENST00000382070		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-3CDS	ENST00000538171	ENST00000262367		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-3CDS	ENST00000538171	ENST00000382070		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-3CDS	ENST00000573872	ENST00000262367		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-3CDS	ENST00000573872	ENST00000382070		TCGA	RV	LUSC	TCGA-43-8115-01A	TRAP1	chr16	3740828	-	CREBBP	chr16	3799684	-
intron-5UTR	ENST00000478754	ENST00000399161		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
intron-5UTR	ENST00000478754	ENST00000428368		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
intron-intron	ENST00000478754	ENST00000407844		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
intron-intron	ENST00000478754	ENST00000471668		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-5UTR	ENST00000398659	ENST00000399161		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-5UTR	ENST00000398659	ENST00000428368		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-intron	ENST00000398659	ENST00000407844		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-intron	ENST00000398659	ENST00000471668		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-5UTR	ENST00000382125	ENST00000399161		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-5UTR	ENST00000382125	ENST00000428368		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-intron	ENST00000382125	ENST00000407844		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-intron	ENST00000382125	ENST00000471668		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-5UTR	ENST00000443925	ENST00000399161		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-5UTR	ENST00000443925	ENST00000428368		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-intron	ENST00000443925	ENST00000407844		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
5CDS-intron	ENST00000443925	ENST00000471668		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TSSC1	chr2	3358321	-	MYT1L	chr2	2176760	-
Frame-shit	ENST00000397906	ENST00000263253		TCGA	RV	LUSC	TCGA-34-5929-01A	TTC28	chr22	29025540	-	EP300	chr22	41531817	+
intron-3CDS	ENST00000490475	ENST00000263253		TCGA	RV	LUSC	TCGA-34-5929-01A	TTC28	chr22	29025540	-	EP300	chr22	41531817	+
5CDS-intron	ENST00000357056	ENST00000344691		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000357056	ENST00000325074		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000357056	ENST00000437180		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000357056	ENST00000300305		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000357056	ENST00000399240		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000357056	ENST00000486278		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000357056	ENST00000494829		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000357056	ENST00000358356		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000344691		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000325074		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000437180		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000300305		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000399240		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-5UTR	ENST00000328459	ENST00000486278		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000494829		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5CDS-intron	ENST00000328459	ENST00000358356		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000344691		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000325074		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000437180		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000300305		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000399240		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-5UTR	ENST00000554654	ENST00000486278		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000494829		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
5UTR-intron	ENST00000554654	ENST00000358356		TCGA	RV	LUSC	TCGA-77-8154-01A	TTC7B	chr14	91110392	-	RUNX1	chr21	36265260	-
In-frame	ENST00000263228	ENST00000379540		TCGA	RV	LUSC	TCGA-56-7580-01A	UBE2R2	chr9	33817932	+	NFX1	chr9	33366627	+
5CDS-intron	ENST00000263228	ENST00000379521		TCGA	RV	LUSC	TCGA-56-7580-01A	UBE2R2	chr9	33817932	+	NFX1	chr9	33366627	+
5CDS-intron	ENST00000263228	ENST00000318524		TCGA	RV	LUSC	TCGA-56-7580-01A	UBE2R2	chr9	33817932	+	NFX1	chr9	33366627	+
5CDS-3UTR	ENST00000263228	ENST00000463421		TCGA	RV	LUSC	TCGA-56-7580-01A	UBE2R2	chr9	33817932	+	NFX1	chr9	33366627	+
3UTR-3CDS	ENST00000459775	ENST00000233838		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
3UTR-3CDS	ENST00000459775	ENST00000430215		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
3UTR-intron	ENST00000459775	ENST00000473665		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000450066	ENST00000233838		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000450066	ENST00000430215		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
5CDS-intron	ENST00000450066	ENST00000473665		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000409025	ENST00000233838		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000409025	ENST00000430215		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
5CDS-intron	ENST00000409025	ENST00000473665		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000409470	ENST00000233838		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000409470	ENST00000430215		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
5CDS-intron	ENST00000409470	ENST00000473665		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000323701	ENST00000233838		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000323701	ENST00000430215		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
5CDS-intron	ENST00000323701	ENST00000473665		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000409766	ENST00000233838		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
Frame-shit	ENST00000409766	ENST00000430215		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
5CDS-intron	ENST00000409766	ENST00000473665		TCGA	RV	LUSC	TCGA-77-A5GH-01A	USP39	chr2	85868241	+	GGCX	chr2	85786198	-
5UTR-5UTR	ENST00000375663	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-5UTR	ENST00000375663	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000375663	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000375663	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000375663	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000375663	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000482996	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000482996	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000482996	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000482996	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000482996	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000482996	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-5UTR	ENST00000444930	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-5UTR	ENST00000444930	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000444930	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000444930	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000444930	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000444930	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000435657	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000435657	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000435657	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000435657	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000435657	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000435657	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000487524	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000487524	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000487524	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000487524	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000487524	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000487524	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000457796	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000457796	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000457796	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000457796	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000457796	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000457796	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000469542	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000469542	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000469542	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000469542	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000469542	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000469542	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000211402	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000211402	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000211402	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000211402	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000211402	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000211402	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000462946	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000462946	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000462946	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000462946	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000462946	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000462946	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000422694	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000422694	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000422694	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000422694	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000422694	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000422694	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000491232	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000491232	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000491232	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000491232	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000491232	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000491232	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000424974	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000424974	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424974	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424974	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424974	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424974	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000425144	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000425144	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000425144	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000425144	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000425144	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000425144	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000474299	ENST00000375654		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000474299	ENST00000417199		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474299	ENST00000426095		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474299	ENST00000456772		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474299	ENST00000417601		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474299	ENST00000383390		TCGA	RV	LUSC	TCGA-96-A4JK-01A	VARS	chr6	31763323	-	HSPA1L	chr6	31779762	-
3UTR-intron	ENST00000395996	ENST00000521601		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
3UTR-intron	ENST00000395996	ENST00000351513		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000358544	ENST00000521601		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000358544	ENST00000351513		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000357162	ENST00000521601		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
5CDS-intron	ENST00000357162	ENST00000351513		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
intron-intron	ENST00000355155	ENST00000521601		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
intron-intron	ENST00000355155	ENST00000351513		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
intron-intron	ENST00000441350	ENST00000521601		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
intron-intron	ENST00000441350	ENST00000351513		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
intron-intron	ENST00000521932	ENST00000521601		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
intron-intron	ENST00000521932	ENST00000351513		TCGA	RV	LUSC	TCGA-60-2706-01A	VPS13B	chr8	100568881	+	DPYS	chr8	105405219	-
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	LUSC	TCGA-94-8035-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	LUSC	TCGA-94-8035-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-intron	ENST00000430629	ENST00000480033		TCGA	RV	LUSC	TCGA-94-8035-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	LUSC	TCGA-94-8035-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	LUSC	TCGA-94-8035-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-intron	ENST00000536657	ENST00000480033		TCGA	RV	LUSC	TCGA-94-8035-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
Frame-shit	ENST00000281405	ENST00000338086		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000281405	ENST00000319801		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000281405	ENST00000361078		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000281405	ENST00000536417		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000281405	ENST00000403432		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000281405	ENST00000420234		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000345530	ENST00000338086		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000345530	ENST00000319801		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000345530	ENST00000361078		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000345530	ENST00000536417		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000345530	ENST00000403432		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000345530	ENST00000420234		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
In-frame	ENST00000416055	ENST00000338086		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
In-frame	ENST00000416055	ENST00000319801		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
In-frame	ENST00000416055	ENST00000361078		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
In-frame	ENST00000416055	ENST00000536417		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
In-frame	ENST00000416055	ENST00000403432		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000416055	ENST00000420234		TCGA	RV	LUSC	TCGA-39-5035-01A	WDR35	chr2	20151176	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000437219	ENST00000571846		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000437219	ENST00000332439		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-intron	ENST00000437219	ENST00000570446		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
In-frame	ENST00000309182	ENST00000571846		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
In-frame	ENST00000309182	ENST00000332439		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
5CDS-intron	ENST00000309182	ENST00000570446		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000446363	ENST00000571846		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000446363	ENST00000332439		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-intron	ENST00000446363	ENST00000570446		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000419248	ENST00000571846		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000419248	ENST00000332439		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-intron	ENST00000419248	ENST00000570446		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
In-frame	ENST00000409644	ENST00000571846		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
In-frame	ENST00000409644	ENST00000332439		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
5CDS-intron	ENST00000409644	ENST00000570446		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000545662	ENST00000571846		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-3CDS	ENST00000545662	ENST00000332439		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
intron-intron	ENST00000545662	ENST00000570446		TCGA	RV	LUSC	TCGA-96-A4JK-01A	WDR81	chr17	1631920	+	CYB5D1	chr17	7761721	+
Frame-shit	ENST00000359774	ENST00000355831		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000359774	ENST00000343439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000359774	ENST00000392782		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000359774	ENST00000392783		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
5CDS-intron	ENST00000359774	ENST00000483316		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000358147	ENST00000355831		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000358147	ENST00000343439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000358147	ENST00000392782		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000358147	ENST00000392783		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
5CDS-intron	ENST00000358147	ENST00000483316		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
In-frame	ENST00000392796	ENST00000355831		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
In-frame	ENST00000392796	ENST00000343439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
In-frame	ENST00000392796	ENST00000392782		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
In-frame	ENST00000392796	ENST00000392783		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
5CDS-intron	ENST00000392796	ENST00000483316		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000409990	ENST00000355831		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000409990	ENST00000343439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000409990	ENST00000392782		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
Frame-shit	ENST00000409990	ENST00000392783		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
5CDS-intron	ENST00000409990	ENST00000483316		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
intron-3CDS	ENST00000409124	ENST00000355831		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
intron-3CDS	ENST00000409124	ENST00000343439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
intron-3CDS	ENST00000409124	ENST00000392782		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
intron-3CDS	ENST00000409124	ENST00000392783		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
intron-intron	ENST00000409124	ENST00000483316		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	WDSUB1	chr2	160104883	-	BAZ2B	chr2	160269056	-
In-frame	ENST00000535572	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
Frame-shit	ENST00000535572	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
5CDS-5UTR	ENST00000535572	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
In-frame	ENST00000537687	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
Frame-shit	ENST00000537687	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
5CDS-5UTR	ENST00000537687	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
In-frame	ENST00000315939	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
Frame-shit	ENST00000315939	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
5CDS-5UTR	ENST00000315939	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
In-frame	ENST00000447667	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
Frame-shit	ENST00000447667	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
5CDS-5UTR	ENST00000447667	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
In-frame	ENST00000530271	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
Frame-shit	ENST00000530271	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
5CDS-5UTR	ENST00000530271	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-3CDS	ENST00000540360	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-3CDS	ENST00000540360	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-5UTR	ENST00000540360	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-3CDS	ENST00000340908	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-3CDS	ENST00000340908	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-5UTR	ENST00000340908	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-3CDS	ENST00000574564	ENST00000228862		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-3CDS	ENST00000574564	ENST00000298573		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
intron-5UTR	ENST00000574564	ENST00000545864		TCGA	RV	LUSC	TCGA-98-A53I-01A	WNK1	chr12	863490	+	DUSP16	chr12	12640121	-
5CDS-5UTR	ENST00000344157	ENST00000310613		TCGA	RV	LUSC	TCGA-37-5819-01A	YTHDC1	chr4	69188467	-	SULT1B1	chr4	70626289	-
5CDS-5UTR	ENST00000355665	ENST00000310613		TCGA	RV	LUSC	TCGA-37-5819-01A	YTHDC1	chr4	69188467	-	SULT1B1	chr4	70626289	-
5CDS-5UTR	ENST00000579690	ENST00000310613		TCGA	RV	LUSC	TCGA-37-5819-01A	YTHDC1	chr4	69188467	-	SULT1B1	chr4	70626289	-
intron-5UTR	ENST00000552105	ENST00000310613		TCGA	RV	LUSC	TCGA-37-5819-01A	YTHDC1	chr4	69188467	-	SULT1B1	chr4	70626289	-
intron-5UTR	ENST00000550485	ENST00000310613		TCGA	RV	LUSC	TCGA-37-5819-01A	YTHDC1	chr4	69188467	-	SULT1B1	chr4	70626289	-
Frame-shit	ENST00000398457	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398457	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398457	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398457	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398457	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000398457	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
3UTR-3CDS	ENST00000462050	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
3UTR-intron	ENST00000462050	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
3UTR-intron	ENST00000462050	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
3UTR-intron	ENST00000462050	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
3UTR-intron	ENST00000462050	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
3UTR-3UTR	ENST00000462050	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000347800	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000347800	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000347800	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000347800	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000347800	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000347800	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000398449	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398449	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398449	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398449	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398449	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000398449	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000361802	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000361802	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000361802	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000361802	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000361802	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000361802	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000343687	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000343687	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000343687	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000343687	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000343687	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000343687	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000398437	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398437	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398437	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398437	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000398437	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000398437	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000340588	ENST00000401548		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000340588	ENST00000540833		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000340588	ENST00000400107		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000340588	ENST00000300398		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-intron	ENST00000340588	ENST00000540880		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
5CDS-3UTR	ENST00000340588	ENST00000476893		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	MEI1	chr22	42195258	+
Frame-shit	ENST00000354700	ENST00000378891		TCGA	RV	LUSC	TCGA-96-A4JK-01A	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
Frame-shit	ENST00000354700	ENST00000378888		TCGA	RV	LUSC	TCGA-96-A4JK-01A	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
5UTR-3CDS	ENST00000353662	ENST00000378891		TCGA	RV	LUSC	TCGA-96-A4JK-01A	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
5UTR-3CDS	ENST00000353662	ENST00000378888		TCGA	RV	LUSC	TCGA-96-A4JK-01A	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
intron-3CDS	ENST00000379037	ENST00000378891		TCGA	RV	LUSC	TCGA-96-A4JK-01A	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
intron-3CDS	ENST00000379037	ENST00000378888		TCGA	RV	LUSC	TCGA-96-A4JK-01A	ACAP3	chr1	1243149	-	DVL1	chr1	1278138	-
In-frame	ENST00000416293	ENST00000535741		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
In-frame	ENST00000416293	ENST00000510413		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
5CDS-intron	ENST00000416293	ENST00000503716		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
5CDS-intron	ENST00000416293	ENST00000357115		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
5CDS-intron	ENST00000416293	ENST00000507224		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
In-frame	ENST00000261733	ENST00000535741		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
In-frame	ENST00000261733	ENST00000510413		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
5CDS-intron	ENST00000261733	ENST00000503716		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
5CDS-intron	ENST00000261733	ENST00000357115		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
5CDS-intron	ENST00000261733	ENST00000507224		TCGA	RV	LUSC	TCGA-85-A50Z-01A	ALDH2	chr12	112237867	+	LRBA	chr4	151793907	-
Frame-shit	ENST00000588623	ENST00000251170		TCGA	RV	LUSC	TCGA-22-5483-01A	ALG1	chr16	5125537	+	SEC14L5	chr16	5064860	+
Frame-shit	ENST00000262374	ENST00000251170		TCGA	RV	LUSC	TCGA-22-5483-01A	ALG1	chr16	5125537	+	SEC14L5	chr16	5064860	+
Frame-shit	ENST00000544428	ENST00000251170		TCGA	RV	LUSC	TCGA-22-5483-01A	ALG1	chr16	5125537	+	SEC14L5	chr16	5064860	+
intron-3CDS	ENST00000592661	ENST00000251170		TCGA	RV	LUSC	TCGA-22-5483-01A	ALG1	chr16	5125537	+	SEC14L5	chr16	5064860	+
In-frame	ENST00000383440	ENST00000341928		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000383440	ENST00000544123		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
In-frame	ENST00000383440	ENST00000540638		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000383440	ENST00000342933		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000383440	ENST00000400111		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000383440	ENST00000542652		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000383440	ENST00000427684		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000383440	ENST00000542146		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
In-frame	ENST00000262126	ENST00000341928		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000262126	ENST00000544123		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
In-frame	ENST00000262126	ENST00000540638		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000262126	ENST00000342933		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000262126	ENST00000400111		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000262126	ENST00000542652		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000262126	ENST00000427684		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000262126	ENST00000542146		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-3CDS	ENST00000540578	ENST00000341928		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-3CDS	ENST00000540578	ENST00000544123		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-3CDS	ENST00000540578	ENST00000540638		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-3CDS	ENST00000540578	ENST00000342933		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-3CDS	ENST00000540578	ENST00000400111		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-intron	ENST00000540578	ENST00000542652		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-intron	ENST00000540578	ENST00000427684		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
3UTR-intron	ENST00000540578	ENST00000542146		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
In-frame	ENST00000400020	ENST00000341928		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000400020	ENST00000544123		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
In-frame	ENST00000400020	ENST00000540638		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000400020	ENST00000342933		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000400020	ENST00000400111		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000400020	ENST00000542652		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000400020	ENST00000427684		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
5CDS-intron	ENST00000400020	ENST00000542146		TCGA	RV	LUSC	TCGA-77-7141-01A	ANKRD12	chr18	9182517	+	EPB41L3	chr18	5489160	-
Frame-shit	ENST00000324856	ENST00000282516		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000324856	ENST00000448238		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
5CDS-3UTR	ENST00000324856	ENST00000504430		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000457599	ENST00000282516		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000457599	ENST00000448238		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
5CDS-3UTR	ENST00000457599	ENST00000504430		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000374152	ENST00000282516		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000374152	ENST00000448238		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
5CDS-3UTR	ENST00000374152	ENST00000504430		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000540690	ENST00000282516		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
Frame-shit	ENST00000540690	ENST00000448238		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
5CDS-3UTR	ENST00000540690	ENST00000504430		TCGA	RV	LUSC	TCGA-18-4083-01A	ARID1A	chr1	27102198	+	NIPBL	chr5	36995724	+
5CDS-5UTR	ENST00000366987	ENST00000262717		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000366987	ENST00000538374		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-intron	ENST00000366987	ENST00000536675		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000341491	ENST00000262717		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000341491	ENST00000538374		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-intron	ENST00000341491	ENST00000536675		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000366985	ENST00000262717		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000366985	ENST00000538374		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-intron	ENST00000366985	ENST00000536675		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
intron-5UTR	ENST00000492118	ENST00000262717		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
intron-5UTR	ENST00000492118	ENST00000538374		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
intron-intron	ENST00000492118	ENST00000536675		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000336937	ENST00000262717		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000336937	ENST00000538374		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-intron	ENST00000336937	ENST00000536675		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000366983	ENST00000262717		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-5UTR	ENST00000366983	ENST00000538374		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
5CDS-intron	ENST00000366983	ENST00000536675		TCGA	RV	LUSC	TCGA-22-5483-01A	ATF3	chr1	212791576	+	CDH20	chr18	59157635	+
In-frame	ENST00000379441	ENST00000338193		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000379441	ENST00000552408		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
Frame-shit	ENST00000179765	ENST00000338193		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000179765	ENST00000552408		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
In-frame	ENST00000551812	ENST00000338193		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000551812	ENST00000552408		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
Frame-shit	ENST00000549884	ENST00000338193		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
5CDS-intron	ENST00000549884	ENST00000552408		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
intron-3CDS	ENST00000553222	ENST00000338193		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
intron-intron	ENST00000553222	ENST00000552408		TCGA	RV	LUSC	TCGA-60-2709-01A	BAZ2A	chr12	57008798	-	PRIM1	chr12	57128029	-
5UTR-3CDS	ENST00000355831	ENST00000409484		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000355831	ENST00000468308		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000355831	ENST00000321348		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-intron	ENST00000355831	ENST00000375252		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3CDS	ENST00000343439	ENST00000409484		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000343439	ENST00000468308		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000343439	ENST00000321348		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-intron	ENST00000343439	ENST00000375252		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3CDS	ENST00000392782	ENST00000409484		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000392782	ENST00000468308		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000392782	ENST00000321348		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-intron	ENST00000392782	ENST00000375252		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3CDS	ENST00000392783	ENST00000409484		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000392783	ENST00000468308		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000392783	ENST00000321348		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-intron	ENST00000392783	ENST00000375252		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3CDS	ENST00000483316	ENST00000409484		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000483316	ENST00000468308		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-3UTR	ENST00000483316	ENST00000321348		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-intron	ENST00000483316	ENST00000375252		TCGA	RV	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160472753	-	CYBRD1	chr2	172398095	+
5UTR-5UTR	ENST00000253233	ENST00000262051		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-5UTR	ENST00000253233	ENST00000547198		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-5UTR	ENST00000253233	ENST00000262052		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-5UTR	ENST00000253233	ENST00000394904		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-5UTR	ENST00000253233	ENST00000547688		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-5UTR	ENST00000253233	ENST00000541174		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-intron	ENST00000253233	ENST00000545993		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-5UTR	ENST00000253233	ENST00000546743		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
5UTR-intron	ENST00000253233	ENST00000549193		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000262051		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000547198		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000262052		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000394904		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000547688		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000541174		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-intron	ENST00000366329	ENST00000545993		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000366329	ENST00000546743		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-intron	ENST00000366329	ENST00000549193		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000262051		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000547198		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000262052		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000394904		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000547688		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000541174		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-intron	ENST00000429587	ENST00000545993		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000429587	ENST00000546743		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
intron-intron	ENST00000429587	ENST00000549193		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	C12orf65	chr12	123718078	+	SLC11A2	chr12	51404549	-
Frame-shit	ENST00000327064	ENST00000264833		TCGA	RV	LUSC	TCGA-43-6771-01A	CARM1	chr19	10982598	+	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000327064	ENST00000590841		TCGA	RV	LUSC	TCGA-43-6771-01A	CARM1	chr19	10982598	+	OLFM2	chr19	9971470	-
Frame-shit	ENST00000344150	ENST00000264833		TCGA	RV	LUSC	TCGA-43-6771-01A	CARM1	chr19	10982598	+	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000344150	ENST00000590841		TCGA	RV	LUSC	TCGA-43-6771-01A	CARM1	chr19	10982598	+	OLFM2	chr19	9971470	-
In-frame	ENST00000539107	ENST00000402685		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000539107	ENST00000539469		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000539107	ENST00000298919		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000545336	ENST00000402685		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000545336	ENST00000539469		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000545336	ENST00000298919		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000381256	ENST00000402685		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000381256	ENST00000539469		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000381256	ENST00000298919		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000381259	ENST00000402685		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000381259	ENST00000539469		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000381259	ENST00000298919		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
3UTR-3CDS	ENST00000540401	ENST00000402685		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
3UTR-3CDS	ENST00000540401	ENST00000539469		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
3UTR-3CDS	ENST00000540401	ENST00000298919		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000306172	ENST00000402685		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000306172	ENST00000539469		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
In-frame	ENST00000306172	ENST00000298919		TCGA	RV	LUSC	TCGA-22-4595-01A	CCDC91	chr12	28637098	+	PDZRN4	chr12	41900258	+
5CDS-5UTR	ENST00000269967	ENST00000222345		TCGA	RV	LUSC	TCGA-34-5241-01A	CCDC97	chr19	41816261	+	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000269967	ENST00000476317		TCGA	RV	LUSC	TCGA-34-5241-01A	CCDC97	chr19	41816261	+	SIPA1L3	chr19	38519729	+
intron-5UTR	ENST00000511642	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000541110		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000372917		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000372922		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000340840		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000354325		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5CDS-intron	ENST00000375587	ENST00000381196		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000360074		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000537002		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000397617		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000358503		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000397611		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000355233		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000356435		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000540109		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000486161		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000397606		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000375587	ENST00000463477		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000375587	ENST00000471274		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000381196		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000360074		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000537002		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000397617		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000358503		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000397611		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000355233		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000356435		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000540109		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000486161		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000397606		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-5UTR	ENST00000375579	ENST00000463477		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375579	ENST00000471274		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000381196		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000360074		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000537002		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000397617		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000358503		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000397611		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000355233		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000356435		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000540109		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000486161		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000397606		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-5UTR	ENST00000375576	ENST00000463477		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000375576	ENST00000471274		TCGA	RV	LUSC	TCGA-58-8392-01A	CENPP	chr9	95142141	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000254190	ENST00000561177		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
5CDS-5UTR	ENST00000254190	ENST00000348070		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
5CDS-5UTR	ENST00000254190	ENST00000358417		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
5CDS-5UTR	ENST00000254190	ENST00000344273		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
5CDS-5UTR	ENST00000254190	ENST00000398181		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
5CDS-intron	ENST00000254190	ENST00000331826		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
intron-5UTR	ENST00000543813	ENST00000561177		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
intron-5UTR	ENST00000543813	ENST00000348070		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
intron-5UTR	ENST00000543813	ENST00000358417		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
intron-5UTR	ENST00000543813	ENST00000344273		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
intron-5UTR	ENST00000543813	ENST00000398181		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
intron-intron	ENST00000543813	ENST00000331826		TCGA	RV	LUSC	TCGA-34-8456-01A	CHSY1	chr15	101775287	-	PCSK6	chr15	101983865	-
In-frame	ENST00000294053	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000294053	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000538039	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000437826	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000340729	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000543042	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-intron	ENST00000445069	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000538021	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000311172		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000409314		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000409418		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000458644		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000409853		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
intron-intron	ENST00000542555	ENST00000409263		TCGA	RV	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005369	-	FCHSD2	chr11	72613683	-
5UTR-intron	ENST00000546079	ENST00000323060		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5UTR-intron	ENST00000546079	ENST00000263275		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5UTR-5UTR	ENST00000546079	ENST00000544371		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5CDS-intron	ENST00000541297	ENST00000323060		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5CDS-intron	ENST00000541297	ENST00000263275		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5CDS-5UTR	ENST00000541297	ENST00000544371		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5CDS-intron	ENST00000337392	ENST00000323060		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5CDS-intron	ENST00000337392	ENST00000263275		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5CDS-5UTR	ENST00000337392	ENST00000544371		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
intron-intron	ENST00000589158	ENST00000323060		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
intron-intron	ENST00000589158	ENST00000263275		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
intron-5UTR	ENST00000589158	ENST00000544371		TCGA	RV	LUSC	TCGA-NK-A5D1-01A	CLPTM1	chr19	45465332	+	OPA3	chr19	46057169	-
5UTR-3CDS	ENST00000296658	ENST00000361951		TCGA	RV	LUSC	TCGA-22-1016-01A	CMBL	chr5	10307737	-	DARS2	chr1	173819465	+
5UTR-5UTR	ENST00000296658	ENST00000239457		TCGA	RV	LUSC	TCGA-22-1016-01A	CMBL	chr5	10307737	-	DARS2	chr1	173819465	+
5UTR-3UTR	ENST00000296658	ENST00000471476		TCGA	RV	LUSC	TCGA-22-1016-01A	CMBL	chr5	10307737	-	DARS2	chr1	173819465	+
intron-3CDS	ENST00000510532	ENST00000361951		TCGA	RV	LUSC	TCGA-22-1016-01A	CMBL	chr5	10307737	-	DARS2	chr1	173819465	+
intron-5UTR	ENST00000510532	ENST00000239457		TCGA	RV	LUSC	TCGA-22-1016-01A	CMBL	chr5	10307737	-	DARS2	chr1	173819465	+
intron-3UTR	ENST00000510532	ENST00000471476		TCGA	RV	LUSC	TCGA-22-1016-01A	CMBL	chr5	10307737	-	DARS2	chr1	173819465	+
Frame-shit	ENST00000375458	ENST00000258662		TCGA	RV	LUSC	TCGA-56-8629-01A	COBLL1	chr2	165548731	-	NUDT15	chr13	48615056	+
Frame-shit	ENST00000342193	ENST00000258662		TCGA	RV	LUSC	TCGA-56-8629-01A	COBLL1	chr2	165548731	-	NUDT15	chr13	48615056	+
Frame-shit	ENST00000409184	ENST00000258662		TCGA	RV	LUSC	TCGA-56-8629-01A	COBLL1	chr2	165548731	-	NUDT15	chr13	48615056	+
Frame-shit	ENST00000392717	ENST00000258662		TCGA	RV	LUSC	TCGA-56-8629-01A	COBLL1	chr2	165548731	-	NUDT15	chr13	48615056	+
Frame-shit	ENST00000194871	ENST00000258662		TCGA	RV	LUSC	TCGA-56-8629-01A	COBLL1	chr2	165548731	-	NUDT15	chr13	48615056	+
intron-3CDS	ENST00000491126	ENST00000258662		TCGA	RV	LUSC	TCGA-56-8629-01A	COBLL1	chr2	165548731	-	NUDT15	chr13	48615056	+
Frame-shit	ENST00000375458	ENST00000303735		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000375458	ENST00000409149		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000375458	ENST00000409058		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000375458	ENST00000409662		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5CDS-intron	ENST00000375458	ENST00000493887		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000342193	ENST00000303735		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000342193	ENST00000409149		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000342193	ENST00000409058		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000342193	ENST00000409662		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5CDS-intron	ENST00000342193	ENST00000493887		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000409184	ENST00000303735		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000409184	ENST00000409149		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000409184	ENST00000409058		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000409184	ENST00000409662		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5CDS-intron	ENST00000409184	ENST00000493887		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000392717	ENST00000303735		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000392717	ENST00000409149		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000392717	ENST00000409058		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000392717	ENST00000409662		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5CDS-intron	ENST00000392717	ENST00000493887		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000194871	ENST00000303735		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000194871	ENST00000409149		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000194871	ENST00000409058		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
Frame-shit	ENST00000194871	ENST00000409662		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5CDS-intron	ENST00000194871	ENST00000493887		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5UTR-3CDS	ENST00000491126	ENST00000303735		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5UTR-3CDS	ENST00000491126	ENST00000409149		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5UTR-3CDS	ENST00000491126	ENST00000409058		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5UTR-3CDS	ENST00000491126	ENST00000409662		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
5UTR-intron	ENST00000491126	ENST00000493887		TCGA	RV	LUSC	TCGA-18-3415-01A	COBLL1	chr2	165697666	-	SLC38A11	chr2	165755240	-
In-frame	ENST00000375458	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
In-frame	ENST00000375458	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
In-frame	ENST00000375458	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000375458	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000375458	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
In-frame	ENST00000342193	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
In-frame	ENST00000342193	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
In-frame	ENST00000342193	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000342193	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000342193	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000409184	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000409184	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000409184	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000409184	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000409184	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000392717	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000392717	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000392717	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000392717	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000392717	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000194871	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000194871	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
Frame-shit	ENST00000194871	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000194871	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000194871	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000491126	ENST00000541742		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000491126	ENST00000490107		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000491126	ENST00000388985		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5UTR-5UTR	ENST00000491126	ENST00000366517		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
5UTR-intron	ENST00000491126	ENST00000403792		TCGA	RV	LUSC	TCGA-22-5474-01A	COBLL1	chr2	165697666	-	SMYD3	chr1	246093239	-
In-frame	ENST00000328300	ENST00000324342		TCGA	RV	LUSC	TCGA-77-A5GH-01A	COL4A5	chrX	107829977	+	RNF128	chrX	106016143	+
In-frame	ENST00000328300	ENST00000255499		TCGA	RV	LUSC	TCGA-77-A5GH-01A	COL4A5	chrX	107829977	+	RNF128	chrX	106016143	+
In-frame	ENST00000361603	ENST00000324342		TCGA	RV	LUSC	TCGA-77-A5GH-01A	COL4A5	chrX	107829977	+	RNF128	chrX	106016143	+
In-frame	ENST00000361603	ENST00000255499		TCGA	RV	LUSC	TCGA-77-A5GH-01A	COL4A5	chrX	107829977	+	RNF128	chrX	106016143	+
intron-3CDS	ENST00000477429	ENST00000324342		TCGA	RV	LUSC	TCGA-77-A5GH-01A	COL4A5	chrX	107829977	+	RNF128	chrX	106016143	+
intron-3CDS	ENST00000477429	ENST00000255499		TCGA	RV	LUSC	TCGA-77-A5GH-01A	COL4A5	chrX	107829977	+	RNF128	chrX	106016143	+
5CDS-intron	ENST00000182096	ENST00000484501		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
5CDS-intron	ENST00000182096	ENST00000329582		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
5CDS-3UTR	ENST00000182096	ENST00000309741		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-intron	ENST00000485253	ENST00000484501		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-intron	ENST00000485253	ENST00000329582		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-3UTR	ENST00000485253	ENST00000309741		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-intron	ENST00000419587	ENST00000484501		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-intron	ENST00000419587	ENST00000329582		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-3UTR	ENST00000419587	ENST00000309741		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-intron	ENST00000389622	ENST00000484501		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-intron	ENST00000389622	ENST00000329582		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
intron-3UTR	ENST00000389622	ENST00000309741		TCGA	RV	LUSC	TCGA-22-5489-01A	CRYBG3	chr3	97600063	+	IL20RB	chr3	136728955	+
Frame-shit	ENST00000351989	ENST00000354336		TCGA	RV	LUSC	TCGA-46-3765-01A	DGCR8	chr22	20096526	+	CRKL	chr22	21288067	+
Frame-shit	ENST00000383024	ENST00000354336		TCGA	RV	LUSC	TCGA-46-3765-01A	DGCR8	chr22	20096526	+	CRKL	chr22	21288067	+
Frame-shit	ENST00000407755	ENST00000354336		TCGA	RV	LUSC	TCGA-46-3765-01A	DGCR8	chr22	20096526	+	CRKL	chr22	21288067	+
In-frame	ENST00000372391	ENST00000372371		TCGA	RV	LUSC	TCGA-85-7697-01A	DLG5	chr10	79685975	-	POLR3A	chr10	79750925	-
5CDS-intron	ENST00000372391	ENST00000484760		TCGA	RV	LUSC	TCGA-85-7697-01A	DLG5	chr10	79685975	-	POLR3A	chr10	79750925	-
In-frame	ENST00000372388	ENST00000372371		TCGA	RV	LUSC	TCGA-85-7697-01A	DLG5	chr10	79685975	-	POLR3A	chr10	79750925	-
5CDS-intron	ENST00000372388	ENST00000484760		TCGA	RV	LUSC	TCGA-85-7697-01A	DLG5	chr10	79685975	-	POLR3A	chr10	79750925	-
intron-3CDS	ENST00000459739	ENST00000372371		TCGA	RV	LUSC	TCGA-85-7697-01A	DLG5	chr10	79685975	-	POLR3A	chr10	79750925	-
intron-intron	ENST00000459739	ENST00000484760		TCGA	RV	LUSC	TCGA-85-7697-01A	DLG5	chr10	79685975	-	POLR3A	chr10	79750925	-
Frame-shit	ENST00000399151	ENST00000326291		TCGA	RV	LUSC	TCGA-37-A5EN-01A	DOPEY2	chr21	37571549	+	PIBF1	chr13	73590007	+
5CDS-3UTR	ENST00000399151	ENST00000489922		TCGA	RV	LUSC	TCGA-37-A5EN-01A	DOPEY2	chr21	37571549	+	PIBF1	chr13	73590007	+
intron-3CDS	ENST00000492760	ENST00000326291		TCGA	RV	LUSC	TCGA-37-A5EN-01A	DOPEY2	chr21	37571549	+	PIBF1	chr13	73590007	+
intron-3UTR	ENST00000492760	ENST00000489922		TCGA	RV	LUSC	TCGA-37-A5EN-01A	DOPEY2	chr21	37571549	+	PIBF1	chr13	73590007	+
5CDS-5UTR	ENST00000421834	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000421834	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000370769	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000370769	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000312431	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000312431	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000370754	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000370754	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000370788	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000370788	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000361203	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
5CDS-5UTR	ENST00000361203	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000244364	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000244364	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000446842	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000446842	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000340834	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000340834	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000370765	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000370765	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000518935	ENST00000357085		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
intron-5UTR	ENST00000518935	ENST00000349458		TCGA	RV	LUSC	TCGA-60-2711-01A	DST	chr6	56707853	-	TRIM38	chr6	25963277	+
In-frame	ENST00000405015	ENST00000406606		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000405015	ENST00000371850		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000405015	ENST00000371851		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000405015	ENST00000486113		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000431489	ENST00000406606		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000431489	ENST00000371850		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000431489	ENST00000371851		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000431489	ENST00000486113		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000354487	ENST00000406606		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000354487	ENST00000371850		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000354487	ENST00000371851		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000354487	ENST00000486113		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000263991	ENST00000406606		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000263991	ENST00000371850		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000263991	ENST00000371851		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000263991	ENST00000486113		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000405289	ENST00000406606		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000405289	ENST00000371850		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
In-frame	ENST00000405289	ENST00000371851		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000405289	ENST00000486113		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
intron-3CDS	ENST00000496857	ENST00000406606		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
intron-3CDS	ENST00000496857	ENST00000371850		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
intron-3CDS	ENST00000496857	ENST00000371851		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
intron-5UTR	ENST00000496857	ENST00000486113		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	EHBP1	chr2	63101667	+	VAV2	chr9	136726554	-
5CDS-5UTR	ENST00000394235	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000394235	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000394235	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000394235	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379549	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379549	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379549	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379549	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379550	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379550	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379550	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000379550	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000265495	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000265495	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000265495	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000265495	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000358635	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000358635	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000358635	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000358635	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000510408	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000510408	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000510408	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000510408	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5UTR-5UTR	ENST00000515489	ENST00000392237		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5UTR-5UTR	ENST00000515489	ENST00000358299		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5UTR-5UTR	ENST00000515489	ENST00000425178		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
5UTR-5UTR	ENST00000515489	ENST00000418208		TCGA	RV	LUSC	TCGA-56-7579-01A	ELF2	chr4	139981478	-	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000327921	ENST00000538205		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-5UTR	ENST00000327921	ENST00000256412		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-intron	ENST00000327921	ENST00000522298		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-intron	ENST00000327921	ENST00000519953		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-5UTR	ENST00000262233	ENST00000538205		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-5UTR	ENST00000262233	ENST00000256412		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-intron	ENST00000262233	ENST00000522298		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-intron	ENST00000262233	ENST00000519953		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-5UTR	ENST00000334192	ENST00000538205		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-5UTR	ENST00000334192	ENST00000256412		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-intron	ENST00000334192	ENST00000522298		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-intron	ENST00000334192	ENST00000519953		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-5UTR	ENST00000556758	ENST00000538205		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-5UTR	ENST00000556758	ENST00000256412		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-intron	ENST00000556758	ENST00000522298		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
intron-intron	ENST00000556758	ENST00000519953		TCGA	RV	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24249775	+
5CDS-5UTR	ENST00000281708	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000281708	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000281708	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000281708	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000281708	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000281708	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000281708	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000281708	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603548	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603548	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603548	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000603548	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603548	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603548	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000603548	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000603548	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604872	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604872	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604872	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000604872	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604872	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604872	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000604872	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000604872	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000296555	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000296555	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000296555	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000296555	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000296555	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000296555	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000296555	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000296555	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000263981	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000263981	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000263981	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000263981	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000263981	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000263981	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000263981	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000263981	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000393956	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000393956	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000393956	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000393956	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000393956	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000393956	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000393956	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000393956	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603841	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603841	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603841	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000603841	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603841	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-5UTR	ENST00000603841	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000603841	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5CDS-intron	ENST00000603841	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604095	ENST00000513000		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604095	ENST00000509777		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604095	ENST00000262992		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000604095	ENST00000308502		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604095	ENST00000508116		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-5UTR	ENST00000604095	ENST00000507861		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000604095	ENST00000506217		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
intron-intron	ENST00000604095	ENST00000508084		TCGA	RV	LUSC	TCGA-60-2714-01A	FBXW7	chr4	153249360	-	INPP4B	chr4	143383879	-
5UTR-3CDS	ENST00000415807	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
intron-3CDS	ENST00000336824	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
intron-3CDS	ENST00000416957	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
5UTR-3CDS	ENST00000392699	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
5UTR-3CDS	ENST00000421757	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
intron-3CDS	ENST00000423424	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
intron-3CDS	ENST00000476794	ENST00000351008		TCGA	RV	LUSC	TCGA-46-6025-01A	FNDC3B	chr3	171757561	+	SPATA16	chr3	172607482	-
In-frame	ENST00000264899	ENST00000315567		TCGA	RV	LUSC	TCGA-66-2756-01A	FRAS1	chr4	78987170	+	MRPL1	chr4	78870951	+
5CDS-intron	ENST00000264899	ENST00000506674		TCGA	RV	LUSC	TCGA-66-2756-01A	FRAS1	chr4	78987170	+	MRPL1	chr4	78870951	+
In-frame	ENST00000325942	ENST00000315567		TCGA	RV	LUSC	TCGA-66-2756-01A	FRAS1	chr4	78987170	+	MRPL1	chr4	78870951	+
5CDS-intron	ENST00000325942	ENST00000506674		TCGA	RV	LUSC	TCGA-66-2756-01A	FRAS1	chr4	78987170	+	MRPL1	chr4	78870951	+
In-frame	ENST00000264895	ENST00000315567		TCGA	RV	LUSC	TCGA-66-2756-01A	FRAS1	chr4	78987170	+	MRPL1	chr4	78870951	+
5CDS-intron	ENST00000264895	ENST00000506674		TCGA	RV	LUSC	TCGA-66-2756-01A	FRAS1	chr4	78987170	+	MRPL1	chr4	78870951	+
In-frame	ENST00000344622	ENST00000351578		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
In-frame	ENST00000344622	ENST00000515010		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
In-frame	ENST00000344622	ENST00000505428		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
In-frame	ENST00000344622	ENST00000512982		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
In-frame	ENST00000344622	ENST00000540520		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
5CDS-intron	ENST00000344622	ENST00000503065		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000326524	ENST00000351578		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000326524	ENST00000515010		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000326524	ENST00000505428		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000326524	ENST00000512982		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000326524	ENST00000540520		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-intron	ENST00000326524	ENST00000503065		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000381826	ENST00000351578		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000381826	ENST00000515010		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000381826	ENST00000505428		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000381826	ENST00000512982		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000381826	ENST00000540520		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
5CDS-intron	ENST00000381826	ENST00000503065		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000427982	ENST00000351578		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000427982	ENST00000515010		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000427982	ENST00000505428		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000427982	ENST00000512982		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-3CDS	ENST00000427982	ENST00000540520		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
intron-intron	ENST00000427982	ENST00000503065		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000515058	ENST00000351578		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000515058	ENST00000515010		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000515058	ENST00000505428		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000515058	ENST00000512982		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000515058	ENST00000540520		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
5CDS-intron	ENST00000515058	ENST00000503065		TCGA	RV	LUSC	TCGA-98-A53B-01A	GDNF	chr5	37834826	-	FYB	chr5	39119736	-
Frame-shit	ENST00000357308	ENST00000410022		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000357308	ENST00000471185		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000357308	ENST00000303698		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000357308	ENST00000394305		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000357308	ENST00000462320		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
Frame-shit	ENST00000361060	ENST00000410022		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000361060	ENST00000471185		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000361060	ENST00000303698		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000361060	ENST00000394305		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-5UTR	ENST00000361060	ENST00000462320		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
intron-3CDS	ENST00000494201	ENST00000410022		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
intron-5UTR	ENST00000494201	ENST00000471185		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
intron-5UTR	ENST00000494201	ENST00000303698		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
intron-5UTR	ENST00000494201	ENST00000394305		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
intron-5UTR	ENST00000494201	ENST00000462320		TCGA	RV	LUSC	TCGA-37-3789-01A	GFPT1	chr2	69590677	-	NFU1	chr2	69623422	-
5CDS-intron	ENST00000264039	ENST00000280653		TCGA	RV	LUSC	TCGA-46-6025-01A	GPC1	chr2	241407493	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000264039	ENST00000471841		TCGA	RV	LUSC	TCGA-46-6025-01A	GPC1	chr2	241407493	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000264039	ENST00000263969		TCGA	RV	LUSC	TCGA-46-6025-01A	GPC1	chr2	241407493	+	MFN1	chr3	179096011	+
intron-intron	ENST00000466624	ENST00000280653		TCGA	RV	LUSC	TCGA-46-6025-01A	GPC1	chr2	241407493	+	MFN1	chr3	179096011	+
intron-intron	ENST00000466624	ENST00000471841		TCGA	RV	LUSC	TCGA-46-6025-01A	GPC1	chr2	241407493	+	MFN1	chr3	179096011	+
intron-intron	ENST00000466624	ENST00000263969		TCGA	RV	LUSC	TCGA-46-6025-01A	GPC1	chr2	241407493	+	MFN1	chr3	179096011	+
Frame-shit	ENST00000406451	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000406451	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406451	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406451	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406451	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406451	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406451	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000401921	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000401921	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000401921	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000401921	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000401921	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000401921	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000401921	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000432645	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000432645	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000432645	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000432645	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000432645	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000432645	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000432645	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000441542	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000441542	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000441542	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000441542	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000441542	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000441542	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000441542	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000417496	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000417496	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000417496	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000417496	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000417496	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000417496	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000417496	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-3CDS	ENST00000476135	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-3CDS	ENST00000476135	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-intron	ENST00000476135	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-intron	ENST00000476135	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-intron	ENST00000476135	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-intron	ENST00000476135	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
intron-intron	ENST00000476135	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000405010	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000405010	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000405010	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000405010	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000405010	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000405010	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000405010	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000428307	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000428307	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000428307	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000428307	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000428307	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000428307	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000428307	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000406072	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000406072	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406072	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406072	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406072	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406072	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000406072	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000456174	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000456174	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000456174	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000456174	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000456174	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000456174	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000456174	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000524023	ENST00000539993		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
Frame-shit	ENST00000524023	ENST00000518698		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000524023	ENST00000349492		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000524023	ENST00000523686		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000524023	ENST00000348340		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000524023	ENST00000337103		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
5CDS-intron	ENST00000524023	ENST00000325233		TCGA	RV	LUSC	TCGA-68-A59I-01A	HDAC9	chr7	18688306	+	C8orf34	chr8	69552611	+
In-frame	ENST00000520810	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000520810	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000520810	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000520810	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000520810	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000520810	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000520810	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000520810	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000520810	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000520810	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000520810	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000520810	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000416505	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000416505	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000416505	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000416505	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000416505	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000416505	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000519735	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000519735	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000519735	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000519735	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000519735	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000519735	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000520835	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000520835	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000520835	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000520835	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000520835	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000520835	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000379708	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000379708	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000379708	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000379708	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000379708	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000379708	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
Frame-shit	ENST00000518983	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000518983	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000518983	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000518983	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000518983	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000518983	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000522147	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000522147	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000522147	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000522147	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000522147	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
5CDS-intron	ENST00000522147	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000347528		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000289734		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000379758		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000396942		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000396945		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000352337		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-3CDS	ENST00000522785	ENST00000265709		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000522785	ENST00000457297		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000522785	ENST00000522231		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000522785	ENST00000522543		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000522785	ENST00000314214		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
intron-intron	ENST00000522785	ENST00000521407		TCGA	RV	LUSC	TCGA-96-8170-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41615655	-
In-frame	ENST00000412504	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000072516	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000443369	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000439062	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000447382	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000422485	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000434491	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000422940	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
In-frame	ENST00000317757	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
intron-3CDS	ENST00000465496	ENST00000354905		TCGA	RV	LUSC	TCGA-22-5491-01A	IL1RAP	chr3	190326970	+	TMEM207	chr3	190165616	-
Frame-shit	ENST00000342056	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000342056	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000342056	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000342056	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000342056	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000342056	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000342056	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000342056	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000342056	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000342056	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000342056	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000355194	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000355194	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355194	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355194	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355194	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355194	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355194	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355194	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000355194	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000355194	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000355194	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000370398	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000370398	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370398	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370398	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370398	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370398	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370398	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370398	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000370398	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000370398	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000370398	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000370392	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000370392	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370392	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370392	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370392	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370392	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370392	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000370392	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000370392	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000370392	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000370392	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000355635	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000355635	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355635	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355635	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355635	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355635	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355635	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000355635	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000355635	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000355635	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000355635	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000414165	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000414165	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000414165	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000414165	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000414165	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000414165	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000414165	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000414165	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000414165	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000414165	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000414165	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000402622	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000402622	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000402622	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000402622	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000402622	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000402622	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000402622	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000402622	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000402622	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000402622	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000402622	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000403813	ENST00000421834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
Frame-shit	ENST00000403813	ENST00000370769		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000403813	ENST00000312431		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000403813	ENST00000370754		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000403813	ENST00000370788		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000403813	ENST00000361203		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000403813	ENST00000244364		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-3UTR	ENST00000403813	ENST00000446842		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000403813	ENST00000340834		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000403813	ENST00000370765		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-intron	ENST00000403813	ENST00000518935		TCGA	RV	LUSC	TCGA-60-2722-01A	KCNQ5	chr6	73332315	+	DST	chr6	56342286	-
5CDS-5UTR	ENST00000409556	ENST00000316752		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000409556	ENST00000407787		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000409556	ENST00000398658		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000312912	ENST00000316752		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000312912	ENST00000407787		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000312912	ENST00000398658		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000409064	ENST00000316752		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000409064	ENST00000407787		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000409064	ENST00000398658		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000542128	ENST00000316752		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000542128	ENST00000407787		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
5CDS-5UTR	ENST00000542128	ENST00000398658		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
intron-5UTR	ENST00000485171	ENST00000316752		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
intron-5UTR	ENST00000485171	ENST00000407787		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
intron-5UTR	ENST00000485171	ENST00000398658		TCGA	RV	LUSC	TCGA-60-2715-01A	KDM3A	chr2	86718398	+	PUS10	chr2	61239040	-
In-frame	ENST00000314256	ENST00000245544		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000314256	ENST00000541827		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000314256	ENST00000579324		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000314256	ENST00000449421		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000314256	ENST00000579298		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-5UTR	ENST00000314256	ENST00000447371		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000314256	ENST00000540768		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
In-frame	ENST00000579208	ENST00000245544		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000579208	ENST00000541827		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000579208	ENST00000579324		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000579208	ENST00000449421		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000579208	ENST00000579298		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-5UTR	ENST00000579208	ENST00000447371		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
5CDS-intron	ENST00000579208	ENST00000540768		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-3CDS	ENST00000375248	ENST00000245544		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000375248	ENST00000541827		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000375248	ENST00000579324		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000375248	ENST00000449421		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000375248	ENST00000579298		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-5UTR	ENST00000375248	ENST00000447371		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000375248	ENST00000540768		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-3CDS	ENST00000583795	ENST00000245544		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000583795	ENST00000541827		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000583795	ENST00000579324		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000583795	ENST00000449421		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000583795	ENST00000579298		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-5UTR	ENST00000583795	ENST00000447371		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-intron	ENST00000583795	ENST00000540768		TCGA	RV	LUSC	TCGA-22-5485-01A	KIAA0195	chr17	73468010	+	NUP85	chr17	73204622	+
intron-3CDS	ENST00000443149	ENST00000374012		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
intron-3UTR	ENST00000443149	ENST00000439301		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
intron-3UTR	ENST00000443149	ENST00000481202		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
Frame-shit	ENST00000399933	ENST00000374012		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000399933	ENST00000439301		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000399933	ENST00000481202		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
Frame-shit	ENST00000381461	ENST00000374012		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000381461	ENST00000439301		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000381461	ENST00000481202		TCGA	RV	LUSC	TCGA-56-8082-01A	KIAA2026	chr9	5988345	-	PHF20	chr20	34487292	+
Frame-shit	ENST00000407071	ENST00000336199		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
Frame-shit	ENST00000407071	ENST00000366540		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
Frame-shit	ENST00000407071	ENST00000366539		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
Frame-shit	ENST00000407071	ENST00000263826		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
5CDS-intron	ENST00000407071	ENST00000492957		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000366518	ENST00000336199		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000366518	ENST00000366540		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000366518	ENST00000366539		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000366518	ENST00000263826		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-intron	ENST00000366518	ENST00000492957		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000479506	ENST00000336199		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000479506	ENST00000366540		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000479506	ENST00000366539		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000479506	ENST00000263826		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-intron	ENST00000479506	ENST00000492957		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KIF26B	chr1	245318789	+	AKT3	chr1	243828185	-
intron-intron	ENST00000477333	ENST00000326291		TCGA	RV	LUSC	TCGA-MF-A522-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000477333	ENST00000489922		TCGA	RV	LUSC	TCGA-MF-A522-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000539231	ENST00000326291		TCGA	RV	LUSC	TCGA-MF-A522-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000539231	ENST00000489922		TCGA	RV	LUSC	TCGA-MF-A522-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000377687	ENST00000326291		TCGA	RV	LUSC	TCGA-MF-A522-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000377687	ENST00000489922		TCGA	RV	LUSC	TCGA-MF-A522-01A	KLF5	chr13	73651676	+	PIBF1	chr13	73410241	+
Frame-shit	ENST00000328879	ENST00000328194		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
Frame-shit	ENST00000328879	ENST00000530044		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5CDS-intron	ENST00000328879	ENST00000527700		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5CDS-intron	ENST00000328879	ENST00000526523		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000440659	ENST00000328194		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000440659	ENST00000530044		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000440659	ENST00000527700		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000440659	ENST00000526523		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000470335	ENST00000328194		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000470335	ENST00000530044		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000470335	ENST00000527700		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000470335	ENST00000526523		TCGA	RV	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20843272	-	DENND5A	chr11	9229179	-
In-frame	ENST00000313654	ENST00000269221		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
In-frame	ENST00000313654	ENST00000590868		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
5CDS-intron	ENST00000313654	ENST00000591367		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
In-frame	ENST00000399516	ENST00000269221		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
In-frame	ENST00000399516	ENST00000590868		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
5CDS-intron	ENST00000399516	ENST00000591367		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-3CDS	ENST00000269217	ENST00000269221		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-3CDS	ENST00000269217	ENST00000590868		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-intron	ENST00000269217	ENST00000591367		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-3CDS	ENST00000587184	ENST00000269221		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-3CDS	ENST00000587184	ENST00000590868		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-intron	ENST00000587184	ENST00000591367		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-3CDS	ENST00000588770	ENST00000269221		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-3CDS	ENST00000588770	ENST00000590868		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
intron-intron	ENST00000588770	ENST00000591367		TCGA	RV	LUSC	TCGA-43-8115-01A	LAMA3	chr18	21294036	+	C18orf8	chr18	21095820	+
Frame-shit	ENST00000300417	ENST00000435213		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000300417	ENST00000314904		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000300417	ENST00000373387		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000300417	ENST00000496711		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
Frame-shit	ENST00000373324	ENST00000435213		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000373324	ENST00000314904		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000373324	ENST00000373387		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000373324	ENST00000496711		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
Frame-shit	ENST00000323301	ENST00000435213		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000323301	ENST00000314904		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000323301	ENST00000373387		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000323301	ENST00000496711		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
Frame-shit	ENST00000373322	ENST00000435213		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000373322	ENST00000314904		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000373322	ENST00000373387		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
5CDS-3UTR	ENST00000373322	ENST00000496711		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
intron-3CDS	ENST00000483302	ENST00000435213		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
intron-3UTR	ENST00000483302	ENST00000314904		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
intron-3UTR	ENST00000483302	ENST00000373387		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
intron-3UTR	ENST00000483302	ENST00000496711		TCGA	RV	LUSC	TCGA-90-6837-01A	LRSAM1	chr9	130221350	+	GARNL3	chr9	130152920	+
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
In-frame	ENST00000354476	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
In-frame	ENST00000390003	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
In-frame	ENST00000418533	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
In-frame	ENST00000402934	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
In-frame	ENST00000404525	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
In-frame	ENST00000407925	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP1	chr2	33447218	+	BIRC6	chr2	32770710	+
intron-3CDS	ENST00000555545	ENST00000328089		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
intron-3CDS	ENST00000555545	ENST00000357898		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
intron-3CDS	ENST00000555545	ENST00000377399		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
In-frame	ENST00000261245	ENST00000328089		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
Frame-shit	ENST00000261245	ENST00000357898		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
Frame-shit	ENST00000261245	ENST00000377399		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
In-frame	ENST00000539616	ENST00000328089		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
Frame-shit	ENST00000539616	ENST00000357898		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
Frame-shit	ENST00000539616	ENST00000377399		TCGA	RV	LUSC	TCGA-77-8131-01A	MNAT1	chr14	61346553	+	SPSB1	chr1	9427507	+
In-frame	ENST00000397641	ENST00000266269		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
In-frame	ENST00000397641	ENST00000405309		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
In-frame	ENST00000397641	ENST00000351933		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
5CDS-intron	ENST00000397641	ENST00000215919		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000215862	ENST00000266269		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000215862	ENST00000405309		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000215862	ENST00000351933		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-intron	ENST00000215862	ENST00000215919		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000469915	ENST00000266269		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000469915	ENST00000405309		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000469915	ENST00000351933		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-intron	ENST00000469915	ENST00000215919		TCGA	RV	LUSC	TCGA-L3-A524-01A	MORC2	chr22	31363808	-	PATZ1	chr22	31731849	-
intron-3CDS	ENST00000546115	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-3CDS	ENST00000546115	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-intron	ENST00000546115	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-intron	ENST00000546115	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-3CDS	ENST00000373730	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-3CDS	ENST00000373730	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-intron	ENST00000373730	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-intron	ENST00000373730	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000297908	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000297908	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000297908	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000297908	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000344641	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000344641	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000344641	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000344641	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000373723	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000373723	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000373723	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000373723	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000373729	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000373729	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000373729	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000373729	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-3CDS	ENST00000373724	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-3CDS	ENST00000373724	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-intron	ENST00000373724	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
intron-intron	ENST00000373724	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000394315	ENST00000338205		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
Frame-shit	ENST00000394315	ENST00000259335		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000394315	ENST00000374378		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-intron	ENST00000394315	ENST00000465499		TCGA	RV	LUSC	TCGA-66-2754-01A	MRRF	chr9	125054119	+	KIAA0368	chr9	114206774	-
5CDS-5UTR	ENST00000416426	ENST00000337714		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000416426	ENST00000314126		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000416426	ENST00000571629		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000416426	ENST00000572557		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000416426	ENST00000539273		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000284073	ENST00000337714		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000284073	ENST00000314126		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000284073	ENST00000571629		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000284073	ENST00000572557		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000284073	ENST00000539273		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000322684	ENST00000337714		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000322684	ENST00000314126		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000322684	ENST00000571629		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000322684	ENST00000572557		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000322684	ENST00000539273		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000442934	ENST00000337714		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000442934	ENST00000314126		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000442934	ENST00000571629		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000442934	ENST00000572557		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000442934	ENST00000539273		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000579180	ENST00000337714		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000579180	ENST00000314126		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000579180	ENST00000571629		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000579180	ENST00000572557		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
5CDS-5UTR	ENST00000579180	ENST00000539273		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
3UTR-5UTR	ENST00000579505	ENST00000337714		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
3UTR-5UTR	ENST00000579505	ENST00000314126		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
3UTR-5UTR	ENST00000579505	ENST00000571629		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
3UTR-5UTR	ENST00000579505	ENST00000572557		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
3UTR-5UTR	ENST00000579505	ENST00000539273		TCGA	RV	LUSC	TCGA-60-2695-01A	MSI2	chr17	55607085	+	AKAP1	chr17	55182802	+
Frame-shit	ENST00000331320	ENST00000430725		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000331320	ENST00000325438		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000331320	ENST00000458164		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000331320	ENST00000447393		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000331320	ENST00000547217		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-intron	ENST00000331320	ENST00000551743		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-intron	ENST00000331320	ENST00000551801		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000406191	ENST00000430725		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000406191	ENST00000325438		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000406191	ENST00000458164		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000406191	ENST00000447393		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000406191	ENST00000547217		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-intron	ENST00000406191	ENST00000551743		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-intron	ENST00000406191	ENST00000551801		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000405646	ENST00000430725		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000405646	ENST00000325438		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000405646	ENST00000458164		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000405646	ENST00000447393		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
Frame-shit	ENST00000405646	ENST00000547217		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-intron	ENST00000405646	ENST00000551743		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-intron	ENST00000405646	ENST00000551801		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-3CDS	ENST00000435036	ENST00000430725		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-3CDS	ENST00000435036	ENST00000325438		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-3CDS	ENST00000435036	ENST00000458164		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-3CDS	ENST00000435036	ENST00000447393		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-3CDS	ENST00000435036	ENST00000547217		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-intron	ENST00000435036	ENST00000551743		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5UTR-intron	ENST00000435036	ENST00000551801		TCGA	RV	LUSC	TCGA-34-5240-01A	MTA1	chr14	105929888	+	PACS2	chr14	105843105	+
5CDS-5UTR	ENST00000472487	ENST00000485760		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000371236		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000371234		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000420954		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000439789		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000414851		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000371231		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5CDS-5UTR	ENST00000472487	ENST00000371230		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000485760		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000371236		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000371234		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000420954		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000439789		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000414851		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000371231		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000493821	ENST00000371230		TCGA	RV	LUSC	TCGA-85-A513-01A	MYSM1	chr1	59150825	-	DAB1	chr1	57611102	-
5UTR-3CDS	ENST00000341724	ENST00000336431		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-intron	ENST00000341724	ENST00000469018		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-3CDS	ENST00000372004	ENST00000336431		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-intron	ENST00000372004	ENST00000469018		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-3CDS	ENST00000371998	ENST00000336431		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-intron	ENST00000371998	ENST00000469018		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-3CDS	ENST00000371997	ENST00000336431		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-intron	ENST00000371997	ENST00000469018		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
intron-3CDS	ENST00000497292	ENST00000336431		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
intron-intron	ENST00000497292	ENST00000469018		TCGA	RV	LUSC	TCGA-6A-AB49-01A	NCOA3	chr20	46130763	+	GGT7	chr20	33451351	-
5UTR-3CDS	ENST00000367385	ENST00000358951		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
5UTR-intron	ENST00000367385	ENST00000462353		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
intron-3CDS	ENST00000538004	ENST00000358951		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
intron-intron	ENST00000538004	ENST00000462353		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
5UTR-3CDS	ENST00000367383	ENST00000358951		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
5UTR-intron	ENST00000367383	ENST00000462353		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
intron-3CDS	ENST00000417895	ENST00000358951		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
intron-intron	ENST00000417895	ENST00000462353		TCGA	RV	LUSC	TCGA-94-8491-01A	NEK7	chr1	198126406	+	RAB3GAP2	chr1	220387321	-
Frame-shit	ENST00000245441	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000245441	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000245441	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000245441	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000245441	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000245441	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000245441	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000245441	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000389868	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000389868	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000530997	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000530997	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382043	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000382043	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000382041	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000382041	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000324330	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000324330	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000453196	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
5CDS-intron	ENST00000453196	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000548724		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000396700		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000323944		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000419632		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000546511		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000550887		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-3CDS	ENST00000486200	ENST00000358326		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
intron-intron	ENST00000486200	ENST00000548369		TCGA	RV	LUSC	TCGA-85-8355-01A	NIN	chr14	51202234	-	STXBP6	chr14	25326363	-
Frame-shit	ENST00000525967	ENST00000426836		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525967	ENST00000373745		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525967	ENST00000373740		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525967	ENST00000448110		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000525967	ENST00000473615		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000525967	ENST00000373750		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000525967	ENST00000373734		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525817	ENST00000426836		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525817	ENST00000373745		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525817	ENST00000373740		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000525817	ENST00000448110		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000525817	ENST00000473615		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000525817	ENST00000373750		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000525817	ENST00000373734		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000356091	ENST00000426836		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000356091	ENST00000373745		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000356091	ENST00000373740		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000356091	ENST00000448110		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000356091	ENST00000473615		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000356091	ENST00000373750		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
5CDS-5UTR	ENST00000356091	ENST00000373734		TCGA	RV	LUSC	TCGA-66-2782-01A	NPEPL1	chr20	57269648	+	DSN1	chr20	35384232	-
Frame-shit	ENST00000173229	ENST00000306357		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
Frame-shit	ENST00000173229	ENST00000574431		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000173229	ENST00000573373		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
Frame-shit	ENST00000538852	ENST00000306357		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
Frame-shit	ENST00000538852	ENST00000574431		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000538852	ENST00000573373		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
Frame-shit	ENST00000546090	ENST00000306357		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
Frame-shit	ENST00000546090	ENST00000574431		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000546090	ENST00000573373		TCGA	RV	LUSC	TCGA-21-5784-01A	NTN1	chr17	9086286	+	STX8	chr17	9153962	-
In-frame	ENST00000607016	ENST00000449981		TCGA	RV	LUSC	TCGA-77-7142-01A	NUDT3	chr6	34360041	-	DNAH8	chr6	38795960	+
In-frame	ENST00000607016	ENST00000359357		TCGA	RV	LUSC	TCGA-77-7142-01A	NUDT3	chr6	34360041	-	DNAH8	chr6	38795960	+
In-frame	ENST00000607016	ENST00000441566		TCGA	RV	LUSC	TCGA-77-7142-01A	NUDT3	chr6	34360041	-	DNAH8	chr6	38795960	+
Frame-shit	ENST00000393249	ENST00000548058		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
Frame-shit	ENST00000393249	ENST00000261206		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000393249	ENST00000548324		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
Frame-shit	ENST00000261183	ENST00000548058		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
Frame-shit	ENST00000261183	ENST00000261206		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000261183	ENST00000548324		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
In-frame	ENST00000393250	ENST00000548058		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
In-frame	ENST00000393250	ENST00000261206		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000393250	ENST00000548324		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
intron-3CDS	ENST00000552178	ENST00000548058		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
intron-3CDS	ENST00000552178	ENST00000261206		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
intron-intron	ENST00000552178	ENST00000548324		TCGA	RV	LUSC	TCGA-33-4587-01A	OSBPL8	chr12	76844631	-	ACSS3	chr12	81503339	+
Frame-shit	ENST00000406610	ENST00000427124		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000406610	ENST00000312504		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000462231	ENST00000427124		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000462231	ENST00000312504		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000349953	ENST00000427124		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000349953	ENST00000312504		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000358768	ENST00000427124		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000358768	ENST00000312504		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000351153	ENST00000427124		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
Frame-shit	ENST00000351153	ENST00000312504		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
intron-3CDS	ENST00000488622	ENST00000427124		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
intron-3CDS	ENST00000488622	ENST00000312504		TCGA	RV	LUSC	TCGA-70-6722-01A	PARD3B	chr2	205830046	+	VWC2L	chr2	215440396	+
In-frame	ENST00000495893	ENST00000231706		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000495893	ENST00000466168		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
In-frame	ENST00000494943	ENST00000231706		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000494943	ENST00000466168		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
In-frame	ENST00000467570	ENST00000231706		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
5CDS-intron	ENST00000467570	ENST00000466168		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000474275	ENST00000231706		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
intron-intron	ENST00000474275	ENST00000466168		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000497658	ENST00000231706		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
intron-intron	ENST00000497658	ENST00000466168		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
intron-3CDS	ENST00000481639	ENST00000231706		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
intron-intron	ENST00000481639	ENST00000466168		TCGA	RV	LUSC	TCGA-94-7943-01A	PHC3	chr3	169854207	-	SLC7A14	chr3	170185165	-
Frame-shit	ENST00000378319	ENST00000354234		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
Frame-shit	ENST00000378319	ENST00000317257		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
5CDS-intron	ENST00000378319	ENST00000481439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
5CDS-intron	ENST00000378319	ENST00000258672		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
Frame-shit	ENST00000357596	ENST00000354234		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
Frame-shit	ENST00000357596	ENST00000317257		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
5CDS-intron	ENST00000357596	ENST00000481439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
5CDS-intron	ENST00000357596	ENST00000258672		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
Frame-shit	ENST00000488958	ENST00000354234		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
Frame-shit	ENST00000488958	ENST00000317257		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
5CDS-intron	ENST00000488958	ENST00000481439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
5CDS-intron	ENST00000488958	ENST00000258672		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
intron-3CDS	ENST00000460489	ENST00000354234		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
intron-3CDS	ENST00000460489	ENST00000317257		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
intron-intron	ENST00000460489	ENST00000481439		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
intron-intron	ENST00000460489	ENST00000258672		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	PHF11	chr13	50098352	+	SETDB2	chr13	50054355	+
In-frame	ENST00000393923	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
In-frame	ENST00000393923	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
5CDS-intron	ENST00000393923	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000412622	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000412622	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000412622	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000431670	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000431670	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000431670	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000393925	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000393925	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000393925	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000481953	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000481953	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000481953	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000495180	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000495180	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000495180	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000478922	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000478922	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000478922	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000477695	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000477695	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000477695	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000470699	ENST00000352690		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000470699	ENST00000283285		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
intron-intron	ENST00000470699	ENST00000438817		TCGA	RV	LUSC	TCGA-51-6867-01A	PHLDB2	chr3	111564782	+	CD96	chr3	111342601	+
Frame-shit	ENST00000422959	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000422959	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000307305	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000307305	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000424760	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000424760	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000415251	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000415251	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000275575	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000275575	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000450574	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000450574	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000416283	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000416283	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000248550	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
Frame-shit	ENST00000248550	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
intron-3CDS	ENST00000454592	ENST00000334955		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
intron-3CDS	ENST00000454592	ENST00000445288		TCGA	RV	LUSC	TCGA-63-A5MI-01A	PHTF2	chr7	77469617	+	RSBN1L	chr7	77402464	+
In-frame	ENST00000370812	ENST00000212355		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000370812	ENST00000370399		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000370812	ENST00000525962		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
5CDS-intron	ENST00000370812	ENST00000468996		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000445065	ENST00000212355		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000445065	ENST00000370399		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000445065	ENST00000525962		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
5CDS-intron	ENST00000445065	ENST00000468996		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000370813	ENST00000212355		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000370813	ENST00000370399		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
In-frame	ENST00000370813	ENST00000525962		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
5CDS-intron	ENST00000370813	ENST00000468996		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-3CDS	ENST00000359130	ENST00000212355		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-3CDS	ENST00000359130	ENST00000370399		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-3CDS	ENST00000359130	ENST00000525962		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-intron	ENST00000359130	ENST00000468996		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-3CDS	ENST00000478391	ENST00000212355		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-3CDS	ENST00000478391	ENST00000370399		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-3CDS	ENST00000478391	ENST00000525962		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-intron	ENST00000478391	ENST00000468996		TCGA	RV	LUSC	TCGA-85-8582-01A	PIGK	chr1	77587960	-	TGFBR3	chr1	92187701	-
intron-5UTR	ENST00000515029	ENST00000356018		TCGA	RV	LUSC	TCGA-77-A5GH-01A	POU2AF1	chr11	111249887	-	BTG4	chr11	111369527	-
intron-5UTR	ENST00000515029	ENST00000525791		TCGA	RV	LUSC	TCGA-77-A5GH-01A	POU2AF1	chr11	111249887	-	BTG4	chr11	111369527	-
5CDS-5UTR	ENST00000393067	ENST00000356018		TCGA	RV	LUSC	TCGA-77-A5GH-01A	POU2AF1	chr11	111249887	-	BTG4	chr11	111369527	-
5CDS-5UTR	ENST00000393067	ENST00000525791		TCGA	RV	LUSC	TCGA-77-A5GH-01A	POU2AF1	chr11	111249887	-	BTG4	chr11	111369527	-
Frame-shit	ENST00000344034	ENST00000260570		TCGA	RV	LUSC	TCGA-94-8491-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682696	-
5CDS-intron	ENST00000344034	ENST00000359466		TCGA	RV	LUSC	TCGA-94-8491-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682696	-
5CDS-intron	ENST00000344034	ENST00000416524		TCGA	RV	LUSC	TCGA-94-8491-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682696	-
In-frame	ENST00000350803	ENST00000260570		TCGA	RV	LUSC	TCGA-94-8491-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682696	-
5CDS-intron	ENST00000350803	ENST00000359466		TCGA	RV	LUSC	TCGA-94-8491-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682696	-
5CDS-intron	ENST00000350803	ENST00000416524		TCGA	RV	LUSC	TCGA-94-8491-01A	PPM1G	chr2	27632170	-	IFT172	chr2	27682696	-
Frame-shit	ENST00000418929	ENST00000596435		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
5CDS-intron	ENST00000418929	ENST00000344019		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
5CDS-intron	ENST00000418929	ENST00000597551		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
5CDS-intron	ENST00000418929	ENST00000204637		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
5CDS-intron	ENST00000418929	ENST00000600429		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
5CDS-intron	ENST00000418929	ENST00000594009		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
5CDS-intron	ENST00000418929	ENST00000595510		TCGA	RV	LUSC	TCGA-56-8304-01A	PRR12	chr19	50105175	+	FLT3LG	chr19	49983555	+
In-frame	ENST00000263708	ENST00000327946		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
5CDS-5UTR	ENST00000263708	ENST00000536331		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
5CDS-intron	ENST00000263708	ENST00000552278		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
intron-3CDS	ENST00000544261	ENST00000327946		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
intron-5UTR	ENST00000544261	ENST00000536331		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
intron-intron	ENST00000544261	ENST00000552278		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
intron-3CDS	ENST00000460162	ENST00000327946		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
intron-5UTR	ENST00000460162	ENST00000536331		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
intron-intron	ENST00000460162	ENST00000552278		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	PTPN4	chr2	120567567	+	GRID1	chr10	87489371	-
Frame-shit	ENST00000379031	ENST00000379370		TCGA	RV	LUSC	TCGA-66-2756-01A	PUSL1	chr1	1245231	+	AGRN	chr1	970657	+
5CDS-3UTR	ENST00000379031	ENST00000477585		TCGA	RV	LUSC	TCGA-66-2756-01A	PUSL1	chr1	1245231	+	AGRN	chr1	970657	+
3UTR-3CDS	ENST00000470520	ENST00000379370		TCGA	RV	LUSC	TCGA-66-2756-01A	PUSL1	chr1	1245231	+	AGRN	chr1	970657	+
3UTR-3UTR	ENST00000470520	ENST00000477585		TCGA	RV	LUSC	TCGA-66-2756-01A	PUSL1	chr1	1245231	+	AGRN	chr1	970657	+
Frame-shit	ENST00000321524	ENST00000356654		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000321524	ENST00000396684		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000543041	ENST00000356654		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000543041	ENST00000396684		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000228843	ENST00000356654		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000228843	ENST00000396684		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000352618	ENST00000356654		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000352618	ENST00000396684		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000544927	ENST00000356654		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000544927	ENST00000396684		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
intron-3CDS	ENST00000544931	ENST00000356654		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
intron-3CDS	ENST00000544931	ENST00000396684		TCGA	RV	LUSC	TCGA-85-8584-01A	RAD51AP1	chr12	4658002	+	ATN1	chr12	7047008	+
Frame-shit	ENST00000424082	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000424082	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000424082	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000424082	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000424082	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000259351	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000259351	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000259351	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000259351	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000259351	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394022	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394022	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394022	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394022	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394022	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373436	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373436	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373436	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373436	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373436	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373434	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373434	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373434	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373434	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000373434	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394011	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394011	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394011	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394011	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
Frame-shit	ENST00000394011	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
3UTR-3CDS	ENST00000480993	ENST00000526117		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
3UTR-3CDS	ENST00000480993	ENST00000373474		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
3UTR-3CDS	ENST00000480993	ENST00000425646		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
3UTR-3CDS	ENST00000480993	ENST00000355497		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
3UTR-3CDS	ENST00000480993	ENST00000561065		TCGA	RV	LUSC	TCGA-L3-A524-01A	RALGPS1	chr9	129728230	+	LMX1B	chr9	129453115	+
In-frame	ENST00000295025	ENST00000356554		TCGA	RV	LUSC	TCGA-60-2726-01A	REL	chr2	61147777	+	MAN1A2	chr1	118035769	+
5CDS-intron	ENST00000295025	ENST00000482811		TCGA	RV	LUSC	TCGA-60-2726-01A	REL	chr2	61147777	+	MAN1A2	chr1	118035769	+
In-frame	ENST00000394479	ENST00000356554		TCGA	RV	LUSC	TCGA-60-2726-01A	REL	chr2	61147777	+	MAN1A2	chr1	118035769	+
5CDS-intron	ENST00000394479	ENST00000482811		TCGA	RV	LUSC	TCGA-60-2726-01A	REL	chr2	61147777	+	MAN1A2	chr1	118035769	+
intron-3CDS	ENST00000392865	ENST00000369093		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-intron	ENST00000392865	ENST00000463089		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-5UTR	ENST00000392865	ENST00000369092		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-5UTR	ENST00000392865	ENST00000436547		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-3CDS	ENST00000369101	ENST00000369093		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-intron	ENST00000369101	ENST00000463089		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-5UTR	ENST00000369101	ENST00000369092		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-5UTR	ENST00000369101	ENST00000436547		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
Frame-shit	ENST00000369103	ENST00000369093		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
5CDS-intron	ENST00000369103	ENST00000463089		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
5CDS-5UTR	ENST00000369103	ENST00000369092		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
5CDS-5UTR	ENST00000369103	ENST00000436547		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-3CDS	ENST00000469575	ENST00000369093		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-intron	ENST00000469575	ENST00000463089		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-5UTR	ENST00000469575	ENST00000369092		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
intron-5UTR	ENST00000469575	ENST00000436547		TCGA	RV	LUSC	TCGA-98-8023-01A	RGS10	chr10	121302102	-	TIAL1	chr10	121347760	-
5CDS-5UTR	ENST00000369291	ENST00000369299		TCGA	RV	LUSC	TCGA-77-7140-01A	RNF115	chr1	145611341	+	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000369291	ENST00000393045		TCGA	RV	LUSC	TCGA-77-7140-01A	RNF115	chr1	145611341	+	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000369291	ENST00000369298		TCGA	RV	LUSC	TCGA-77-7140-01A	RNF115	chr1	145611341	+	PIAS3	chr1	145578062	+
Frame-shit	ENST00000367771	ENST00000367765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367771	ENST00000367767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367771	ENST00000361580		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367771	ENST00000538366		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367771	ENST00000540905		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5CDS-intron	ENST00000367771	ENST00000490550		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367772	ENST00000367765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367772	ENST00000367767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367772	ENST00000361580		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367772	ENST00000538366		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367772	ENST00000540905		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5CDS-intron	ENST00000367772	ENST00000490550		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367770	ENST00000367765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367770	ENST00000367767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367770	ENST00000361580		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367770	ENST00000538366		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
Frame-shit	ENST00000367770	ENST00000540905		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5CDS-intron	ENST00000367770	ENST00000490550		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-3CDS	ENST00000470238	ENST00000367765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-3CDS	ENST00000470238	ENST00000367767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-3CDS	ENST00000470238	ENST00000361580		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-3CDS	ENST00000470238	ENST00000538366		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-3CDS	ENST00000470238	ENST00000540905		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-intron	ENST00000470238	ENST00000490550		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SCYL3	chr1	169842837	-	KIFAP3	chr1	169923251	-
5UTR-5UTR	ENST00000392476	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000392476	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000392476	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000392476	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000392476	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000392476	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000430767	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000430767	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000430767	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000430767	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000430767	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000430767	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000564509	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000564509	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000564509	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000564509	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000564509	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000564509	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000585618	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000585618	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000585618	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000585618	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000585618	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000585618	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000413679	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000413679	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000413679	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000413679	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000413679	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000413679	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000436233	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000436233	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000436233	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000436233	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000436233	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000436233	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000443798	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000443798	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000443798	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000443798	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000443798	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000443798	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000591437	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000591437	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000591437	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000591437	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000591437	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000591437	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000431431	ENST00000393328		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000431431	ENST00000393331		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000431431	ENST00000347630		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000431431	ENST00000504102		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000431431	ENST00000503676		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000431431	ENST00000513080		TCGA	RV	LUSC	TCGA-66-2783-01A	SEC14L1	chr17	75089429	+	SPOP	chr17	47700238	-
In-frame	ENST00000436639	ENST00000503581		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
In-frame	ENST00000436639	ENST00000370621		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
In-frame	ENST00000436639	ENST00000370616		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5CDS-intron	ENST00000436639	ENST00000393380		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5CDS-intron	ENST00000436639	ENST00000342421		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5CDS-intron	ENST00000436639	ENST00000370618		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5CDS-5UTR	ENST00000436639	ENST00000486069		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-3CDS	ENST00000302071	ENST00000503581		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-3CDS	ENST00000302071	ENST00000370621		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-3CDS	ENST00000302071	ENST00000370616		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-intron	ENST00000302071	ENST00000393380		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-intron	ENST00000302071	ENST00000342421		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-intron	ENST00000302071	ENST00000370618		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-5UTR	ENST00000302071	ENST00000486069		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-3CDS	ENST00000356644	ENST00000503581		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-3CDS	ENST00000356644	ENST00000370621		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-3CDS	ENST00000356644	ENST00000370616		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-intron	ENST00000356644	ENST00000393380		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-intron	ENST00000356644	ENST00000342421		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-intron	ENST00000356644	ENST00000370618		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
intron-5UTR	ENST00000356644	ENST00000486069		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-3CDS	ENST00000517548	ENST00000503581		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-3CDS	ENST00000517548	ENST00000370621		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-3CDS	ENST00000517548	ENST00000370616		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-intron	ENST00000517548	ENST00000393380		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-intron	ENST00000517548	ENST00000342421		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-intron	ENST00000517548	ENST00000370618		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
5UTR-5UTR	ENST00000517548	ENST00000486069		TCGA	RV	LUSC	TCGA-66-2759-01A	SESN1	chr6	109414998	-	EYS	chr6	64498142	-
Frame-shit	ENST00000358026	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000358026	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000344626	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000344626	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000429416	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000429416	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000541122	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000541122	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000589677	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000589677	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000444061	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000444061	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000590574	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000590574	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000413806	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000413806	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000450717	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
In-frame	ENST00000450717	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
intron-3CDS	ENST00000538456	ENST00000592854		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
intron-3CDS	ENST00000538456	ENST00000397820		TCGA	RV	LUSC	TCGA-66-2771-01A	SMARCA4	chr19	11101999	+	C19orf38	chr19	10979894	+
5CDS-intron	ENST00000374232	ENST00000337530		TCGA	RV	LUSC	TCGA-56-7822-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000374244		TCGA	RV	LUSC	TCGA-56-7822-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000536272		TCGA	RV	LUSC	TCGA-56-7822-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000337530		TCGA	RV	LUSC	TCGA-56-7822-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000374244		TCGA	RV	LUSC	TCGA-56-7822-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000536272		TCGA	RV	LUSC	TCGA-56-7822-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5UTR-3CDS	ENST00000328089	ENST00000377403		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5UTR-3CDS	ENST00000328089	ENST00000602477		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5UTR-intron	ENST00000328089	ENST00000495451		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000357898	ENST00000377403		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000357898	ENST00000602477		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-intron	ENST00000357898	ENST00000495451		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000377399	ENST00000377403		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000377399	ENST00000602477		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-intron	ENST00000377399	ENST00000495451		TCGA	RV	LUSC	TCGA-34-8454-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5CDS-5UTR	ENST00000383202	ENST00000288986		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000383202	ENST00000481752		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-intron	ENST00000383202	ENST00000469404		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000236698	ENST00000288986		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000236698	ENST00000481752		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-intron	ENST00000236698	ENST00000469404		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000434713	ENST00000288986		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000434713	ENST00000481752		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
5CDS-intron	ENST00000434713	ENST00000469404		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
intron-5UTR	ENST00000480733	ENST00000288986		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
intron-5UTR	ENST00000480733	ENST00000481752		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
intron-intron	ENST00000480733	ENST00000469404		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
intron-5UTR	ENST00000536929	ENST00000288986		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
intron-5UTR	ENST00000536929	ENST00000481752		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
intron-intron	ENST00000536929	ENST00000469404		TCGA	RV	LUSC	TCGA-94-8035-01A	STAG1	chr3	136221470	-	NCK1	chr3	136646826	+
In-frame	ENST00000539805	ENST00000202677		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
5CDS-intron	ENST00000539805	ENST00000495793		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
5UTR-3CDS	ENST00000480436	ENST00000202677		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
5UTR-intron	ENST00000480436	ENST00000495793		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
Frame-shit	ENST00000337743	ENST00000202677		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
5CDS-intron	ENST00000337743	ENST00000495793		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
Frame-shit	ENST00000544472	ENST00000202677		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
5CDS-intron	ENST00000544472	ENST00000495793		TCGA	RV	LUSC	TCGA-96-7544-01A	TASP1	chr20	13604093	-	RALGAPA2	chr20	20634231	-
Frame-shit	ENST00000508802	ENST00000330852		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
Frame-shit	ENST00000508802	ENST00000288723		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
Frame-shit	ENST00000508802	ENST00000338176		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
Frame-shit	ENST00000261439	ENST00000330852		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
Frame-shit	ENST00000261439	ENST00000288723		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
Frame-shit	ENST00000261439	ENST00000338176		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
intron-3CDS	ENST00000402522	ENST00000330852		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
intron-3CDS	ENST00000402522	ENST00000288723		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
intron-3CDS	ENST00000402522	ENST00000338176		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
intron-3CDS	ENST00000407365	ENST00000330852		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
intron-3CDS	ENST00000407365	ENST00000288723		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
intron-3CDS	ENST00000407365	ENST00000338176		TCGA	RV	LUSC	TCGA-43-6143-01A	TBC1D1	chr4	38055959	+	RAB28	chr4	13481150	-
In-frame	ENST00000355528	ENST00000306729		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
In-frame	ENST00000355528	ENST00000306739		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
In-frame	ENST00000355528	ENST00000580534		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5CDS-intron	ENST00000355528	ENST00000581647		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5CDS-intron	ENST00000355528	ENST00000582404		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5UTR-3CDS	ENST00000397466	ENST00000306729		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5UTR-3CDS	ENST00000397466	ENST00000306739		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5UTR-3CDS	ENST00000397466	ENST00000580534		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5UTR-intron	ENST00000397466	ENST00000581647		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5UTR-intron	ENST00000397466	ENST00000582404		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
In-frame	ENST00000539345	ENST00000306729		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
In-frame	ENST00000539345	ENST00000306739		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
In-frame	ENST00000539345	ENST00000580534		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5CDS-intron	ENST00000539345	ENST00000581647		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
5CDS-intron	ENST00000539345	ENST00000582404		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
intron-3CDS	ENST00000576691	ENST00000306729		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
intron-3CDS	ENST00000576691	ENST00000306739		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
intron-3CDS	ENST00000576691	ENST00000580534		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
intron-intron	ENST00000576691	ENST00000581647		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
intron-intron	ENST00000576691	ENST00000582404		TCGA	RV	LUSC	TCGA-39-5034-01A	TBCD	chr17	80730383	+	ASPSCR1	chr17	79967362	+
In-frame	ENST00000366601	ENST00000488594		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000366601	ENST00000358966		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000366601	ENST00000282841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-5UTR	ENST00000366601	ENST00000391855		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000366601	ENST00000489692		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000366601	ENST00000476121		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000406207	ENST00000488594		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000406207	ENST00000358966		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000406207	ENST00000282841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-5UTR	ENST00000406207	ENST00000391855		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000406207	ENST00000489692		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000406207	ENST00000476121		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000543662	ENST00000488594		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000543662	ENST00000358966		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
In-frame	ENST00000543662	ENST00000282841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-5UTR	ENST00000543662	ENST00000391855		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000543662	ENST00000489692		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000543662	ENST00000476121		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
3UTR-3CDS	ENST00000472011	ENST00000488594		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
3UTR-3CDS	ENST00000472011	ENST00000358966		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
3UTR-3CDS	ENST00000472011	ENST00000282841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
3UTR-5UTR	ENST00000472011	ENST00000391855		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
3UTR-intron	ENST00000472011	ENST00000489692		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
3UTR-intron	ENST00000472011	ENST00000476121		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TBCE	chr1	235543464	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000389834	ENST00000389413		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000389834	ENST00000409483		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000389834	ENST00000389416		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000389834	ENST00000389418		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000389834	ENST00000404321		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
Frame-shit	ENST00000448392	ENST00000389413		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000448392	ENST00000409483		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000448392	ENST00000389416		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000448392	ENST00000389418		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000448392	ENST00000404321		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
Frame-shit	ENST00000307216	ENST00000389413		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000307216	ENST00000409483		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000307216	ENST00000389416		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000307216	ENST00000389418		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
5CDS-intron	ENST00000307216	ENST00000404321		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
intron-3CDS	ENST00000568432	ENST00000389413		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
intron-intron	ENST00000568432	ENST00000409483		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
intron-intron	ENST00000568432	ENST00000389416		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
intron-intron	ENST00000568432	ENST00000389418		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
intron-intron	ENST00000568432	ENST00000404321		TCGA	RV	LUSC	TCGA-66-2758-01A	TMEM87A	chr15	42565453	-	PTPRN2	chr7	158109624	-
In-frame	ENST00000425528	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000425528	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000425528	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000441499	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000441499	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000441499	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000356861	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000356861	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000356861	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000450764	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
In-frame	ENST00000450764	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000450764	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
Frame-shit	ENST00000592287	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
Frame-shit	ENST00000592287	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000592287	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
Frame-shit	ENST00000588216	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
Frame-shit	ENST00000588216	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000588216	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000589956	ENST00000397668		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000589956	ENST00000264827		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5UTR-5UTR	ENST00000589956	ENST00000589965		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TNPO2	chr19	12822110	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000171887	ENST00000258412		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000171887	ENST00000445635		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000171887	ENST00000396809		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000171887	ENST00000444881		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-3CDS	ENST00000419504	ENST00000258412		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000419504	ENST00000445635		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000419504	ENST00000396809		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000419504	ENST00000444881		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-3CDS	ENST00000430930	ENST00000258412		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000430930	ENST00000445635		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000430930	ENST00000396809		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
5UTR-5UTR	ENST00000430930	ENST00000444881		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-3CDS	ENST00000310858	ENST00000258412		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-5UTR	ENST00000310858	ENST00000445635		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-5UTR	ENST00000310858	ENST00000396809		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-5UTR	ENST00000310858	ENST00000444881		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-3CDS	ENST00000480665	ENST00000258412		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-5UTR	ENST00000480665	ENST00000445635		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-5UTR	ENST00000480665	ENST00000396809		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
intron-5UTR	ENST00000480665	ENST00000444881		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	TNS1	chr2	218771933	-	TMBIM1	chr2	219144849	-
Frame-shit	ENST00000361136	ENST00000462833		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
Frame-shit	ENST00000361136	ENST00000491190		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
Frame-shit	ENST00000361136	ENST00000309879		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
5CDS-5UTR	ENST00000361136	ENST00000470367		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
Frame-shit	ENST00000361875	ENST00000462833		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
Frame-shit	ENST00000361875	ENST00000491190		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
Frame-shit	ENST00000361875	ENST00000309879		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
5CDS-5UTR	ENST00000361875	ENST00000470367		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
intron-3CDS	ENST00000492828	ENST00000462833		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
intron-3CDS	ENST00000492828	ENST00000491190		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
intron-3CDS	ENST00000492828	ENST00000309879		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
intron-5UTR	ENST00000492828	ENST00000470367		TCGA	RV	LUSC	TCGA-85-6175-01A	TSC22D2	chr3	150129095	+	ADCY5	chr3	123071428	-
Frame-shit	ENST00000322244	ENST00000283916		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	UBA6	chr4	68494789	-	TMPRSS11D	chr4	68725396	-
5CDS-intron	ENST00000322244	ENST00000545541		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	UBA6	chr4	68494789	-	TMPRSS11D	chr4	68725396	-
5CDS-intron	ENST00000322244	ENST00000509584		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	UBA6	chr4	68494789	-	TMPRSS11D	chr4	68725396	-
intron-3CDS	ENST00000420827	ENST00000283916		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	UBA6	chr4	68494789	-	TMPRSS11D	chr4	68725396	-
intron-intron	ENST00000420827	ENST00000545541		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	UBA6	chr4	68494789	-	TMPRSS11D	chr4	68725396	-
intron-intron	ENST00000420827	ENST00000509584		TCGA	RV	LUSC	TCGA-XC-AA0X-01A	UBA6	chr4	68494789	-	TMPRSS11D	chr4	68725396	-
intron-3CDS	ENST00000351097	ENST00000356316		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000351097	ENST00000318023		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000351097	ENST00000357568		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000351097	ENST00000349748		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000351097	ENST00000397163		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000351097	ENST00000397200		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000351097	ENST00000337571		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000351097	ENST00000569136		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000351097	ENST00000561817		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000351097	ENST00000397204		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000351097	ENST00000562199		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285679	ENST00000356316		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285679	ENST00000318023		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285679	ENST00000357568		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285679	ENST00000349748		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285679	ENST00000397163		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285679	ENST00000397200		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285679	ENST00000337571		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285679	ENST00000569136		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285679	ENST00000561817		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285679	ENST00000397204		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285679	ENST00000562199		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285681	ENST00000356316		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285681	ENST00000318023		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285681	ENST00000357568		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285681	ENST00000349748		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000285681	ENST00000397163		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285681	ENST00000397200		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285681	ENST00000337571		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285681	ENST00000569136		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285681	ENST00000561817		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285681	ENST00000397204		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000285681	ENST00000562199		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000400183	ENST00000356316		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000400183	ENST00000318023		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000400183	ENST00000357568		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000400183	ENST00000349748		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
Frame-shit	ENST00000400183	ENST00000397163		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000400183	ENST00000397200		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000400183	ENST00000337571		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000400183	ENST00000569136		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000400183	ENST00000561817		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000400183	ENST00000397204		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
5CDS-intron	ENST00000400183	ENST00000562199		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000547201	ENST00000356316		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000547201	ENST00000318023		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000547201	ENST00000357568		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000547201	ENST00000349748		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000547201	ENST00000397163		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000547201	ENST00000397200		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000547201	ENST00000337571		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000547201	ENST00000569136		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000547201	ENST00000561817		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000547201	ENST00000397204		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-intron	ENST00000547201	ENST00000562199		TCGA	RV	LUSC	TCGA-77-A5G3-01A	USP25	chr21	17203948	+	CAPN3	chr15	42676681	+
intron-3CDS	ENST00000537031	ENST00000305108		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000537031	ENST00000397265		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000537031	ENST00000542920		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000537031	ENST00000433832		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-intron	ENST00000537031	ENST00000537416		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000310594	ENST00000305108		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000310594	ENST00000397265		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000310594	ENST00000542920		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000310594	ENST00000433832		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-intron	ENST00000310594	ENST00000537416		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000397196	ENST00000305108		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000397196	ENST00000397265		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000397196	ENST00000542920		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000397196	ENST00000433832		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-intron	ENST00000397196	ENST00000537416		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000542408	ENST00000305108		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000542408	ENST00000397265		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000542408	ENST00000542920		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000542408	ENST00000433832		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-intron	ENST00000542408	ENST00000537416		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000545747	ENST00000305108		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000545747	ENST00000397265		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000545747	ENST00000542920		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000545747	ENST00000433832		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
intron-intron	ENST00000545747	ENST00000537416		TCGA	RV	LUSC	TCGA-39-5036-01A	WNT5B	chr12	1640116	+	NINJ2	chr12	675344	-
In-frame	ENST00000375128	ENST00000343933		TCGA	RV	LUSC	TCGA-96-A4JK-01A	XPA	chr9	100449378	-	CORO2A	chr9	100919942	-
In-frame	ENST00000375128	ENST00000375077		TCGA	RV	LUSC	TCGA-96-A4JK-01A	XPA	chr9	100449378	-	CORO2A	chr9	100919942	-
intron-3CDS	ENST00000485042	ENST00000343933		TCGA	RV	LUSC	TCGA-96-A4JK-01A	XPA	chr9	100449378	-	CORO2A	chr9	100919942	-
intron-3CDS	ENST00000485042	ENST00000375077		TCGA	RV	LUSC	TCGA-96-A4JK-01A	XPA	chr9	100449378	-	CORO2A	chr9	100919942	-
In-frame	ENST00000595962	ENST00000221476		TCGA	RV	LUSC	TCGA-90-7767-01A	ZNF480	chr19	52819215	+	CKM	chr19	45815178	-
intron-3CDS	ENST00000334564	ENST00000221476		TCGA	RV	LUSC	TCGA-90-7767-01A	ZNF480	chr19	52819215	+	CKM	chr19	45815178	-
intron-3CDS	ENST00000490272	ENST00000221476		TCGA	RV	LUSC	TCGA-90-7767-01A	ZNF480	chr19	52819215	+	CKM	chr19	45815178	-
In-frame	ENST00000335090	ENST00000221476		TCGA	RV	LUSC	TCGA-90-7767-01A	ZNF480	chr19	52819215	+	CKM	chr19	45815178	-
intron-5UTR	ENST00000293648	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000293648	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000293648	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-intron	ENST00000293648	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000448622	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000448622	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000448622	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000448622	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000453372	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000453372	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000453372	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000453372	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000541032	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000541032	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000541032	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-intron	ENST00000541032	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000590155	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000590155	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000590155	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000590155	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000453792	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000453792	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-5UTR	ENST00000453792	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
intron-intron	ENST00000453792	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5UTR-5UTR	ENST00000537617	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5UTR-5UTR	ENST00000537617	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5UTR-5UTR	ENST00000537617	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5UTR-intron	ENST00000537617	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000587392	ENST00000303657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000587392	ENST00000359161		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000587392	ENST00000592546		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
5CDS-intron	ENST00000587392	ENST00000587700		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	ZNF562	chr19	9770055	-	RFX2	chr19	6047515	-
In-frame	ENST00000293771	ENST00000252456		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000293771	ENST00000592923		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000293771	ENST00000535659		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000293771	ENST00000588468		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000293771	ENST00000544952		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
intron-3CDS	ENST00000593191	ENST00000252456		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
intron-5UTR	ENST00000593191	ENST00000592923		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
intron-5UTR	ENST00000593191	ENST00000535659		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
intron-3UTR	ENST00000593191	ENST00000588468		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
intron-3UTR	ENST00000593191	ENST00000544952		TCGA	RV	LUSC	TCGA-94-7943-01A	ZNF653	chr19	11616303	-	CNN1	chr19	11651891	+
intron-5UTR	ENST00000318560	ENST00000302586		TCGA	RV	LUSC	TCGA-66-2755-01A	ABL1	chr9	133589842	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000318560	ENST00000320665		TCGA	RV	LUSC	TCGA-66-2755-01A	ABL1	chr9	133589842	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000318560	ENST00000483599		TCGA	RV	LUSC	TCGA-66-2755-01A	ABL1	chr9	133589842	+	CCBL1	chr9	131607690	-
intron-5UTR	ENST00000318560	ENST00000436267		TCGA	RV	LUSC	TCGA-66-2755-01A	ABL1	chr9	133589842	+	CCBL1	chr9	131607690	-
intron-3CDS	ENST00000557515	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000557515	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000557515	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000557515	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-5UTR	ENST00000557515	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000338631	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000338631	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000338631	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000338631	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-5UTR	ENST00000338631	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000357481	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000357481	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000357481	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000357481	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-5UTR	ENST00000357481	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000605057	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000605057	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000605057	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000605057	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
5CDS-5UTR	ENST00000605057	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000457657	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000457657	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000457657	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000457657	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
5CDS-5UTR	ENST00000457657	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000262710	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000262710	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000262710	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000262710	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
5CDS-5UTR	ENST00000262710	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000397341	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000397341	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000397341	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000397341	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-5UTR	ENST00000397341	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000555053	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000555053	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000555053	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
Frame-shit	ENST00000555053	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
5CDS-5UTR	ENST00000555053	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000555352	ENST00000392903		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000555352	ENST00000260777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000555352	ENST00000355371		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-3CDS	ENST00000555352	ENST00000392901		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
intron-5UTR	ENST00000555352	ENST00000497044		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ACIN1	chr14	23559731	-	KIAA1598	chr10	118700123	-
In-frame	ENST00000354484	ENST00000373511		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
In-frame	ENST00000354484	ENST00000373498		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000350766		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000373503		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000394063		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000265960		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000373497		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000394060		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000354484	ENST00000483937		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
In-frame	ENST00000393061	ENST00000373511		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
In-frame	ENST00000393061	ENST00000373498		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000350766		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000373503		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000394063		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000265960		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000373497		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000394060		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393061	ENST00000483937		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
In-frame	ENST00000393060	ENST00000373511		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
In-frame	ENST00000393060	ENST00000373498		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000350766		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000373503		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000394063		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000265960		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000373497		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000394060		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000393060	ENST00000483937		TCGA	RV	LUSC	TCGA-22-4604-01A	ADAMTSL2	chr9	136406123	+	MAPKAP1	chr9	128268696	-
Frame-shit	ENST00000336665	ENST00000250615		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
5CDS-5UTR	ENST00000336665	ENST00000392492		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
Frame-shit	ENST00000304032	ENST00000250615		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
5CDS-5UTR	ENST00000304032	ENST00000392492		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
intron-3CDS	ENST00000409538	ENST00000250615		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
intron-5UTR	ENST00000409538	ENST00000392492		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
intron-3CDS	ENST00000428334	ENST00000250615		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
intron-5UTR	ENST00000428334	ENST00000392492		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
Frame-shit	ENST00000409457	ENST00000250615		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
5CDS-5UTR	ENST00000409457	ENST00000392492		TCGA	RV	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74464754	+
In-frame	ENST00000379370	ENST00000330579		TCGA	RV	LUSC	TCGA-39-5029-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000379370	ENST00000535343		TCGA	RV	LUSC	TCGA-39-5029-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000379370	ENST00000538784		TCGA	RV	LUSC	TCGA-39-5029-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
3UTR-3CDS	ENST00000477585	ENST00000330579		TCGA	RV	LUSC	TCGA-39-5029-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
3UTR-intron	ENST00000477585	ENST00000535343		TCGA	RV	LUSC	TCGA-39-5029-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
3UTR-5UTR	ENST00000477585	ENST00000538784		TCGA	RV	LUSC	TCGA-39-5029-01A	AGRN	chr1	970704	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000330817	ENST00000216268		TCGA	RV	LUSC	TCGA-66-2754-01A	ALG12	chr22	50301369	-	ZBED4	chr22	50276982	+
Frame-shit	ENST00000382456	ENST00000369002		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000382456	ENST00000460009		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000411763	ENST00000369002		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-intron	ENST00000411763	ENST00000460009		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000292807	ENST00000369002		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000292807	ENST00000460009		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000439647	ENST00000369002		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-intron	ENST00000439647	ENST00000460009		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000461733	ENST00000369002		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-intron	ENST00000461733	ENST00000460009		TCGA	RV	LUSC	TCGA-58-8388-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
5UTR-3CDS	ENST00000368346	ENST00000437809		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000368346	ENST00000368331		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000368346	ENST00000271883		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000368346	ENST00000361040		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-5UTR	ENST00000368346	ENST00000471341		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000392403	ENST00000437809		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000392403	ENST00000368331		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000392403	ENST00000271883		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000392403	ENST00000361040		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-5UTR	ENST00000392403	ENST00000471341		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000548830	ENST00000437809		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000548830	ENST00000368331		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000548830	ENST00000271883		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-3CDS	ENST00000548830	ENST00000361040		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
5UTR-5UTR	ENST00000548830	ENST00000471341		TCGA	RV	LUSC	TCGA-L3-A524-01A	ASH1L	chr1	155531944	-	GON4L	chr1	155786053	-
Frame-shit	ENST00000369043	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000369043	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000369043	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000369043	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000535655	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000535655	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000535655	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5UTR-intron	ENST00000535655	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000224652	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000224652	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000224652	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000224652	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000369040	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000369040	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000369040	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000369040	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000540606	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000540606	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000540606	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000540606	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000543447	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000543447	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000543447	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000543447	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000481784	ENST00000394903		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000481784	ENST00000338820		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000481784	ENST00000444643		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
intron-intron	ENST00000481784	ENST00000461919		TCGA	RV	LUSC	TCGA-43-8116-01A	ATE1	chr10	123670421	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000446450	ENST00000298032		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
Frame-shit	ENST00000446450	ENST00000409983		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000446450	ENST00000409049		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000446450	ENST00000376528		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000446450	ENST00000464017		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
Frame-shit	ENST00000354956	ENST00000298032		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
Frame-shit	ENST00000354956	ENST00000409983		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000354956	ENST00000409049		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000354956	ENST00000376528		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000354956	ENST00000464017		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
Frame-shit	ENST00000354449	ENST00000298032		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
Frame-shit	ENST00000354449	ENST00000409983		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000354449	ENST00000409049		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000354449	ENST00000376528		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
5CDS-intron	ENST00000354449	ENST00000464017		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
intron-3CDS	ENST00000469654	ENST00000298032		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
intron-3CDS	ENST00000469654	ENST00000409983		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
intron-intron	ENST00000469654	ENST00000409049		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
intron-intron	ENST00000469654	ENST00000376528		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
intron-intron	ENST00000469654	ENST00000464017		TCGA	RV	LUSC	TCGA-43-8116-01A	ATG7	chr3	11406208	+	ARMC3	chr10	23319525	+
Frame-shit	ENST00000446450	ENST00000367069		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000446450	ENST00000607398		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000446450	ENST00000449822		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000446450	ENST00000297262		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000446450	ENST00000252655		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
Frame-shit	ENST00000354956	ENST00000367069		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354956	ENST00000607398		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354956	ENST00000449822		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354956	ENST00000297262		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354956	ENST00000252655		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
Frame-shit	ENST00000354449	ENST00000367069		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354449	ENST00000607398		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354449	ENST00000449822		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354449	ENST00000297262		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
5CDS-intron	ENST00000354449	ENST00000252655		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
3UTR-3CDS	ENST00000469654	ENST00000367069		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
3UTR-intron	ENST00000469654	ENST00000607398		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
3UTR-intron	ENST00000469654	ENST00000449822		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
3UTR-intron	ENST00000469654	ENST00000297262		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
3UTR-intron	ENST00000469654	ENST00000252655		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159404839	-
Frame-shit	ENST00000262429	ENST00000219454		TCGA	RV	LUSC	TCGA-94-8491-01A	ATP2C2	chr16	84402320	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000262429	ENST00000568638		TCGA	RV	LUSC	TCGA-94-8491-01A	ATP2C2	chr16	84402320	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000416219	ENST00000219454		TCGA	RV	LUSC	TCGA-94-8491-01A	ATP2C2	chr16	84402320	+	WFDC1	chr16	84358025	+
Frame-shit	ENST00000416219	ENST00000568638		TCGA	RV	LUSC	TCGA-94-8491-01A	ATP2C2	chr16	84402320	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000420010	ENST00000219454		TCGA	RV	LUSC	TCGA-94-8491-01A	ATP2C2	chr16	84402320	+	WFDC1	chr16	84358025	+
intron-3CDS	ENST00000420010	ENST00000568638		TCGA	RV	LUSC	TCGA-94-8491-01A	ATP2C2	chr16	84402320	+	WFDC1	chr16	84358025	+
In-frame	ENST00000421745	ENST00000238831		TCGA	RV	LUSC	TCGA-43-8115-01A	BIRC6	chr2	32582554	+	YIPF4	chr2	32515552	+
5CDS-5UTR	ENST00000388890	ENST00000561924		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000388890	ENST00000290858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000388890	ENST00000412916		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-intron	ENST00000388890	ENST00000568858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000323510	ENST00000561924		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000323510	ENST00000290858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000323510	ENST00000412916		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-intron	ENST00000323510	ENST00000568858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000483173	ENST00000561924		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000483173	ENST00000290858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000483173	ENST00000412916		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-intron	ENST00000483173	ENST00000568858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000467963	ENST00000561924		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000467963	ENST00000290858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000467963	ENST00000412916		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-intron	ENST00000467963	ENST00000568858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000435709	ENST00000561924		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000435709	ENST00000290858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-5UTR	ENST00000435709	ENST00000412916		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
5CDS-intron	ENST00000435709	ENST00000568858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
intron-5UTR	ENST00000494422	ENST00000561924		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
intron-5UTR	ENST00000494422	ENST00000290858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
intron-5UTR	ENST00000494422	ENST00000412916		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
intron-intron	ENST00000494422	ENST00000568858		TCGA	RV	LUSC	TCGA-77-7138-01A	BRD9	chr5	884053	-	CBFB	chr16	67063630	+
Frame-shit	ENST00000394524	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394524	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394524	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394524	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394524	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394524	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000394524	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000454265	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000454265	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000454265	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000454265	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000454265	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000454265	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000454265	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394526	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394526	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394526	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394526	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394526	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394526	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000394526	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000429180	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000429180	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000429180	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000429180	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000429180	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000429180	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000429180	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000296402	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000296402	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000296402	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000296402	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000296402	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000296402	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000296402	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000418639	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000418639	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000418639	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000418639	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000418639	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000418639	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000418639	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000511664	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000511664	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000511664	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000511664	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000511664	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000511664	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000511664	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000342666	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000342666	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000342666	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000342666	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000342666	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000342666	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000342666	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000515496	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000515496	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000515496	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000515496	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000515496	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000515496	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000515496	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000514328	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000514328	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000514328	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000514328	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000514328	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000514328	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000514328	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394522	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394522	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394522	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394522	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000394522	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000394522	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000394522	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000505990	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000505990	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000505990	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000505990	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000505990	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000505990	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000505990	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000379773	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000379773	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000379773	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000379773	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000379773	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000379773	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000379773	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000508738	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000508738	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000508738	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000508738	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
Frame-shit	ENST00000508738	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
In-frame	ENST00000508738	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
5CDS-intron	ENST00000508738	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000509907	ENST00000506722		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000509907	ENST00000394537		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000509907	ENST00000357077		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000509907	ENST00000264366		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000509907	ENST00000509550		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000509907	ENST00000510275		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-intron	ENST00000509907	ENST00000504887		TCGA	RV	LUSC	TCGA-98-A53A-01A	CAMK2D	chr4	114430794	-	ANK2	chr4	114302613	+
intron-3CDS	ENST00000374706	ENST00000474362		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000374721		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000489388		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000374726		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000429130		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000469949		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000460270		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000354759		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000489321		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000395895		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000374728		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000345491		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000333809		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000439705		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000337656		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000374734		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000479070		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000348787		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000361599		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000484283		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000395887		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000463314		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000342105		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000463960		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000487763		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000473940		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000488328		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000356917		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000488741		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000474931		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-intron	ENST00000374706	ENST00000468236		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000344351		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
intron-3UTR	ENST00000374706	ENST00000490511		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3CDS	ENST00000265375	ENST00000474362		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000374721		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000489388		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000374726		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000429130		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000469949		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000460270		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000354759		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000489321		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000395895		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000374728		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000345491		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000333809		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000439705		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000337656		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000374734		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000479070		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000348787		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000361599		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000484283		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000395887		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000463314		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000342105		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000463960		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000487763		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000473940		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000488328		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000356917		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000488741		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000474931		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-intron	ENST00000265375	ENST00000468236		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000344351		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-3UTR	ENST00000265375	ENST00000490511		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
Frame-shit	ENST00000339497	ENST00000474362		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000374721		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000489388		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000374726		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000429130		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000469949		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000460270		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000354759		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000489321		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000395895		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000374728		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000345491		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000333809		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000439705		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000337656		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000374734		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000479070		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000348787		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000361599		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000484283		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000395887		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000463314		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000342105		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000463960		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000487763		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000473940		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000488328		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000356917		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000488741		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000474931		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000339497	ENST00000468236		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000344351		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000339497	ENST00000490511		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
Frame-shit	ENST00000374704	ENST00000474362		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000374721		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000489388		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000374726		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000429130		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000469949		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000460270		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000354759		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000489321		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000395895		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000374728		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000345491		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000333809		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000439705		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000337656		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000374734		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000479070		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000348787		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000361599		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000484283		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000395887		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000463314		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000342105		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000463960		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000487763		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000473940		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000488328		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000356917		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000488741		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000474931		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-intron	ENST00000374704	ENST00000468236		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000344351		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5CDS-3UTR	ENST00000374704	ENST00000490511		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3CDS	ENST00000492478	ENST00000474362		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000374721		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000489388		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000374726		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000429130		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000469949		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000460270		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000354759		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000489321		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000395895		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000374728		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000345491		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000333809		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000439705		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000337656		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000374734		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000479070		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000348787		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000361599		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000484283		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000395887		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000463314		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000342105		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000463960		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000487763		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000473940		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000488328		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000356917		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000488741		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000474931		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-intron	ENST00000492478	ENST00000468236		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000344351		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
3UTR-3UTR	ENST00000492478	ENST00000490511		TCGA	RV	LUSC	TCGA-37-4130-01A	CCNY	chr10	35626135	+	CREM	chr10	35500584	+
5UTR-5UTR	ENST00000274695	ENST00000380833		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
5UTR-5UTR	ENST00000274695	ENST00000380829		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
5UTR-intron	ENST00000274695	ENST00000421085		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
5UTR-5UTR	ENST00000378624	ENST00000380833		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
5UTR-5UTR	ENST00000378624	ENST00000380829		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
5UTR-intron	ENST00000378624	ENST00000421085		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
intron-5UTR	ENST00000378610	ENST00000380833		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
intron-5UTR	ENST00000378610	ENST00000380829		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
intron-intron	ENST00000378610	ENST00000421085		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
intron-5UTR	ENST00000476517	ENST00000380833		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
intron-5UTR	ENST00000476517	ENST00000380829		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
intron-intron	ENST00000476517	ENST00000421085		TCGA	RV	LUSC	TCGA-56-8307-01A	CDKAL1	chr6	20535625	+	CLCN4	chrX	10153062	+
5CDS-5UTR	ENST00000375458	ENST00000360093		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000375458	ENST00000283254		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000375458	ENST00000409101		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000375458	ENST00000540861		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000375458	ENST00000465043		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000342193	ENST00000360093		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000342193	ENST00000283254		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000342193	ENST00000409101		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000342193	ENST00000540861		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000342193	ENST00000465043		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000409184	ENST00000360093		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000409184	ENST00000283254		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000409184	ENST00000409101		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000409184	ENST00000540861		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000409184	ENST00000465043		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000392717	ENST00000360093		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000392717	ENST00000283254		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000392717	ENST00000409101		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000392717	ENST00000540861		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000392717	ENST00000465043		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000194871	ENST00000360093		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000194871	ENST00000283254		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-5UTR	ENST00000194871	ENST00000409101		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000194871	ENST00000540861		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
5CDS-intron	ENST00000194871	ENST00000465043		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
intron-5UTR	ENST00000491126	ENST00000360093		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
intron-5UTR	ENST00000491126	ENST00000283254		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
intron-5UTR	ENST00000491126	ENST00000409101		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
intron-intron	ENST00000491126	ENST00000540861		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
intron-intron	ENST00000491126	ENST00000465043		TCGA	RV	LUSC	TCGA-22-5485-01A	COBLL1	chr2	165600197	-	SCN3A	chr2	166043257	-
Frame-shit	ENST00000540367	ENST00000395074		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000540367	ENST00000528954		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
In-frame	ENST00000540367	ENST00000528489		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000376618	ENST00000395074		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000376618	ENST00000528954		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000376618	ENST00000528489		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000265641	ENST00000395074		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000265641	ENST00000528954		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000265641	ENST00000528489		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000539743	ENST00000395074		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000539743	ENST00000528954		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
In-frame	ENST00000539743	ENST00000528489		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
intron-3CDS	ENST00000537756	ENST00000395074		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
intron-3CDS	ENST00000537756	ENST00000528954		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
intron-3CDS	ENST00000537756	ENST00000528489		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
5UTR-3CDS	ENST00000538994	ENST00000395074		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
5UTR-3CDS	ENST00000538994	ENST00000528954		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
5UTR-3CDS	ENST00000538994	ENST00000528489		TCGA	RV	LUSC	TCGA-94-A5I6-01A	CPT1A	chr11	68566686	-	LPXN	chr11	58338186	-
Frame-shit	ENST00000377724	ENST00000358127		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000377724	ENST00000523241		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000377724	ENST00000520154		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000377724	ENST00000377852		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000377724	ENST00000377853		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377724	ENST00000522003		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377724	ENST00000520281		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377724	ENST00000414447		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377724	ENST00000523145		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377724	ENST00000446742		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377724	ENST00000377847		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000242323	ENST00000358127		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000242323	ENST00000523241		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000242323	ENST00000520154		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000242323	ENST00000377852		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
Frame-shit	ENST00000242323	ENST00000377853		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000242323	ENST00000522003		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000242323	ENST00000520281		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000242323	ENST00000414447		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000242323	ENST00000523145		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000242323	ENST00000446742		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
5CDS-intron	ENST00000242323	ENST00000377847		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-3CDS	ENST00000483167	ENST00000358127		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-3CDS	ENST00000483167	ENST00000523241		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-3CDS	ENST00000483167	ENST00000520154		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-3CDS	ENST00000483167	ENST00000377852		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-3CDS	ENST00000483167	ENST00000377853		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-intron	ENST00000483167	ENST00000522003		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-intron	ENST00000483167	ENST00000520281		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-intron	ENST00000483167	ENST00000414447		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-intron	ENST00000483167	ENST00000523145		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-intron	ENST00000483167	ENST00000446742		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-intron	ENST00000483167	ENST00000377847		TCGA	RV	LUSC	TCGA-77-8009-01A	DCAF10	chr9	37801402	+	PAX5	chr9	37020798	-
intron-3CDS	ENST00000473039	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-3CDS	ENST00000473039	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-intron	ENST00000473039	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000373624	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000373624	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
5CDS-intron	ENST00000373624	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-3CDS	ENST00000542603	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-3CDS	ENST00000542603	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-intron	ENST00000542603	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-3CDS	ENST00000394219	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-3CDS	ENST00000394219	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
intron-intron	ENST00000394219	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000373620	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000373620	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
5CDS-intron	ENST00000373620	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000394215	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000394215	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
5CDS-intron	ENST00000394215	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000373618	ENST00000374941		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000373618	ENST00000262850		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
5CDS-intron	ENST00000373618	ENST00000474757		TCGA	RV	LUSC	TCGA-85-7710-01A	DENND1A	chr9	126641230	-	RRAGB	chrX	55745747	+
Frame-shit	ENST00000267889	ENST00000448599		TCGA	RV	LUSC	TCGA-66-2756-01A	DISP2	chr15	40650641	+	PHGR1	chr15	40648274	+
Frame-shit	ENST00000595437	ENST00000377047		TCGA	RV	LUSC	TCGA-60-2709-01A	FARP1	chr13	99038068	+	GPC6	chr13	94482407	+
Frame-shit	ENST00000376586	ENST00000377047		TCGA	RV	LUSC	TCGA-60-2709-01A	FARP1	chr13	99038068	+	GPC6	chr13	94482407	+
Frame-shit	ENST00000319562	ENST00000377047		TCGA	RV	LUSC	TCGA-60-2709-01A	FARP1	chr13	99038068	+	GPC6	chr13	94482407	+
intron-3CDS	ENST00000376581	ENST00000377047		TCGA	RV	LUSC	TCGA-60-2709-01A	FARP1	chr13	99038068	+	GPC6	chr13	94482407	+
intron-3CDS	ENST00000593990	ENST00000377047		TCGA	RV	LUSC	TCGA-60-2709-01A	FARP1	chr13	99038068	+	GPC6	chr13	94482407	+
In-frame	ENST00000340553	ENST00000356805		TCGA	RV	LUSC	TCGA-60-2715-01A	FOXN2	chr2	48573890	+	SPTBN1	chr2	54849437	+
In-frame	ENST00000340553	ENST00000333896		TCGA	RV	LUSC	TCGA-60-2715-01A	FOXN2	chr2	48573890	+	SPTBN1	chr2	54849437	+
intron-5UTR	ENST00000535593	ENST00000539393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
intron-5UTR	ENST00000535593	ENST00000240652		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
intron-5UTR	ENST00000535593	ENST00000542023		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000542038	ENST00000539393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000542038	ENST00000240652		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000542038	ENST00000542023		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000540141	ENST00000539393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000540141	ENST00000240652		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000540141	ENST00000542023		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000229314	ENST00000539393		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000229314	ENST00000240652		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000229314	ENST00000542023		TCGA	RV	LUSC	TCGA-77-A5GH-01A	GOLT1B	chr12	21661495	+	IAPP	chr12	21526271	+
Frame-shit	ENST00000437809	ENST00000532414		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
5CDS-5UTR	ENST00000437809	ENST00000442784		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
Frame-shit	ENST00000368331	ENST00000532414		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
5CDS-5UTR	ENST00000368331	ENST00000442784		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
Frame-shit	ENST00000271883	ENST00000532414		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
5CDS-5UTR	ENST00000271883	ENST00000442784		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
Frame-shit	ENST00000361040	ENST00000532414		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
5CDS-5UTR	ENST00000361040	ENST00000442784		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
5UTR-3CDS	ENST00000471341	ENST00000532414		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
5UTR-5UTR	ENST00000471341	ENST00000442784		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	GON4L	chr1	155823067	-	MEX3A	chr1	156047473	-
Frame-shit	ENST00000504156	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000504156	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000504156	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000504156	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000457527	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000457527	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000457527	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000457527	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000431330	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000431330	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000431330	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000431330	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
In-frame	ENST00000504366	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
In-frame	ENST00000504366	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000504366	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000504366	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000448240	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000448240	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000448240	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000448240	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000307633	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000307633	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000307633	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000307633	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000438307	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000438307	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000438307	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000438307	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000415192	ENST00000394671		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
Frame-shit	ENST00000415192	ENST00000511410		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000415192	ENST00000537378		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
5CDS-5UTR	ENST00000415192	ENST00000252100		TCGA	RV	LUSC	TCGA-O2-A52N-01A	HARS	chr5	140056239	-	TMCO6	chr5	140019324	+
In-frame	ENST00000433700	ENST00000427277		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000433700	ENST00000297954		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000433700	ENST00000395475		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000433700	ENST00000356055		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000433700	ENST00000349097		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000433700	ENST00000395477		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000433700	ENST00000471076		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000443698	ENST00000427277		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000443698	ENST00000297954		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000443698	ENST00000395475		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000443698	ENST00000356055		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000443698	ENST00000349097		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000443698	ENST00000395477		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000443698	ENST00000471076		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000380062	ENST00000427277		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000380062	ENST00000297954		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000380062	ENST00000395475		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000380062	ENST00000356055		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000380062	ENST00000349097		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000380062	ENST00000395477		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000380062	ENST00000471076		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000429045	ENST00000427277		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
In-frame	ENST00000429045	ENST00000297954		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000429045	ENST00000395475		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000429045	ENST00000356055		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000429045	ENST00000349097		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000429045	ENST00000395477		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
5CDS-3UTR	ENST00000429045	ENST00000471076		TCGA	RV	LUSC	TCGA-66-2759-01A	IFT74	chr9	26962085	+	WNK2	chr9	96079802	+
3UTR-3CDS	ENST00000477874	ENST00000405555		TCGA	RV	LUSC	TCGA-22-A5C4-01A	IL17RA	chr22	17566119	+	SCARF2	chr22	20784120	-
3UTR-3CDS	ENST00000477874	ENST00000266214		TCGA	RV	LUSC	TCGA-22-A5C4-01A	IL17RA	chr22	17566119	+	SCARF2	chr22	20784120	-
Frame-shit	ENST00000319363	ENST00000405555		TCGA	RV	LUSC	TCGA-22-A5C4-01A	IL17RA	chr22	17566119	+	SCARF2	chr22	20784120	-
Frame-shit	ENST00000319363	ENST00000266214		TCGA	RV	LUSC	TCGA-22-A5C4-01A	IL17RA	chr22	17566119	+	SCARF2	chr22	20784120	-
5CDS-intron	ENST00000283928	ENST00000436072		TCGA	RV	LUSC	TCGA-68-A59I-01A	JAZF1	chr7	28031528	-	SFRP4	chr7	37966376	-
intron-intron	ENST00000466516	ENST00000436072		TCGA	RV	LUSC	TCGA-68-A59I-01A	JAZF1	chr7	28031528	-	SFRP4	chr7	37966376	-
In-frame	ENST00000332180	ENST00000544246		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
In-frame	ENST00000332180	ENST00000377865		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000332180	ENST00000456367		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000332180	ENST00000328454		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000332180	ENST00000377861		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
intron-3CDS	ENST00000547171	ENST00000544246		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
intron-3CDS	ENST00000547171	ENST00000377865		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
intron-intron	ENST00000547171	ENST00000456367		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
intron-intron	ENST00000547171	ENST00000328454		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
intron-intron	ENST00000547171	ENST00000377861		TCGA	RV	LUSC	TCGA-46-6025-01A	KIAA1033	chr12	105534179	+	PCDH9	chr13	67477737	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
In-frame	ENST00000366518	ENST00000541742		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
In-frame	ENST00000366518	ENST00000490107		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
In-frame	ENST00000366518	ENST00000388985		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000366518	ENST00000403792		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	LUSC	TCGA-63-A5MB-01A	KIF26B	chr1	245772830	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000378535	ENST00000263102		TCGA	RV	LUSC	TCGA-22-1017-01A	KITLG	chr12	88974041	-	CCDC6	chr10	61612460	-
In-frame	ENST00000228280	ENST00000263102		TCGA	RV	LUSC	TCGA-22-1017-01A	KITLG	chr12	88974041	-	CCDC6	chr10	61612460	-
In-frame	ENST00000347404	ENST00000263102		TCGA	RV	LUSC	TCGA-22-1017-01A	KITLG	chr12	88974041	-	CCDC6	chr10	61612460	-
5UTR-3CDS	ENST00000357116	ENST00000263102		TCGA	RV	LUSC	TCGA-22-1017-01A	KITLG	chr12	88974041	-	CCDC6	chr10	61612460	-
5CDS-5UTR	ENST00000254770	ENST00000400128		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000254770	ENST00000400131		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000254770	ENST00000400135		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000254770	ENST00000400127		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000254770	ENST00000338326		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000254770	ENST00000299295		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000254770	ENST00000543733		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000400128		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000400131		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000400135		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000400127		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000338326		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000299295		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000486376	ENST00000543733		TCGA	RV	LUSC	TCGA-O2-A52N-01A	LANCL2	chr7	55433922	+	CHODL	chr21	19628826	+
intron-3CDS	ENST00000448637	ENST00000470487		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
intron-3CDS	ENST00000448637	ENST00000309027		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
5UTR-3CDS	ENST00000312675	ENST00000470487		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
5UTR-3CDS	ENST00000312675	ENST00000309027		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
5UTR-3CDS	ENST00000543006	ENST00000470487		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
5UTR-3CDS	ENST00000543006	ENST00000309027		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
intron-3CDS	ENST00000471917	ENST00000470487		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
intron-3CDS	ENST00000471917	ENST00000309027		TCGA	RV	LUSC	TCGA-22-5491-01A	LPP	chr3	187943315	+	GOLIM4	chr3	167766153	-
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000354476	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000390003	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000418533	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000402934	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000404525	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000407925	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	LUSC	TCGA-58-8390-01A	LTBP1	chr2	33624424	+	BIRC6	chr2	32820101	+
5CDS-intron	ENST00000602240	ENST00000216297		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000602240	ENST00000555943		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000204005	ENST00000216297		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000204005	ENST00000555943		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000545697	ENST00000216297		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000545697	ENST00000555943		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000308370	ENST00000216297		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000308370	ENST00000555943		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000396819	ENST00000216297		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000396819	ENST00000555943		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000243562	ENST00000216297		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000243562	ENST00000555943		TCGA	RV	LUSC	TCGA-L3-A524-01A	LTBP4	chr19	41135722	+	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000440884	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000440884	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000440884	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000440884	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000416682	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000416682	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000416682	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000416682	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000429436	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000429436	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000429436	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000429436	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000303622	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000303622	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000303622	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000303622	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000216288	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000216288	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000216288	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000216288	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000553942	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000553942	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000553942	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000553942	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000335102	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000335102	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000335102	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000335102	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
3UTR-3CDS	ENST00000561071	ENST00000267620		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
3UTR-3CDS	ENST00000561071	ENST00000342058		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
3UTR-3CDS	ENST00000561071	ENST00000556154		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
3UTR-intron	ENST00000561071	ENST00000556961		TCGA	RV	LUSC	TCGA-43-5668-01A	MARK3	chr14	103871604	+	FBLN5	chr14	92361416	-
Frame-shit	ENST00000309993	ENST00000434900		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000520708		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000518759		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000360422		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000330432		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000428397		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000452687		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000229768		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000524163		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000419506		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000414028		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000435918		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000337049		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-intron	ENST00000309993	ENST00000523520		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000522555		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
5CDS-5UTR	ENST00000309993	ENST00000522236		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-3CDS	ENST00000434835	ENST00000434900		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000520708		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000518759		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000360422		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000330432		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000428397		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000452687		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000229768		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000524163		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000419506		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000414028		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000435918		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000337049		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-intron	ENST00000434835	ENST00000523520		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000522555		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
intron-5UTR	ENST00000434835	ENST00000522236		TCGA	RV	LUSC	TCGA-63-A5MT-01A	MSL2	chr3	135913814	-	OPRM1	chr6	154410961	+
Frame-shit	ENST00000332674	ENST00000360162		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000332674	ENST00000356080		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000332674	ENST00000277900		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
5CDS-3UTR	ENST00000332674	ENST00000497125		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000361248	ENST00000360162		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000361248	ENST00000356080		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000361248	ENST00000277900		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
5CDS-3UTR	ENST00000361248	ENST00000497125		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000239007	ENST00000360162		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000239007	ENST00000356080		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000239007	ENST00000277900		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
5CDS-3UTR	ENST00000239007	ENST00000497125		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000393134	ENST00000360162		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000393134	ENST00000356080		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000393134	ENST00000277900		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
5CDS-3UTR	ENST00000393134	ENST00000497125		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
3UTR-3CDS	ENST00000485566	ENST00000360162		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
3UTR-3CDS	ENST00000485566	ENST00000356080		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
3UTR-3CDS	ENST00000485566	ENST00000277900		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
3UTR-3UTR	ENST00000485566	ENST00000497125		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000369612	ENST00000360162		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000369612	ENST00000356080		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
Frame-shit	ENST00000369612	ENST00000277900		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
5CDS-3UTR	ENST00000369612	ENST00000497125		TCGA	RV	LUSC	TCGA-77-8153-01A	MXI1	chr10	111988079	+	ADD3	chr10	111878345	+
In-frame	ENST00000256646	ENST00000226432		TCGA	RV	LUSC	TCGA-33-A4WN-01A	NOTCH2	chr1	120506197	-	CWH43	chr4	49032842	+
In-frame	ENST00000256646	ENST00000513409		TCGA	RV	LUSC	TCGA-33-A4WN-01A	NOTCH2	chr1	120506197	-	CWH43	chr4	49032842	+
intron-3CDS	ENST00000602566	ENST00000226432		TCGA	RV	LUSC	TCGA-33-A4WN-01A	NOTCH2	chr1	120506197	-	CWH43	chr4	49032842	+
intron-3CDS	ENST00000602566	ENST00000513409		TCGA	RV	LUSC	TCGA-33-A4WN-01A	NOTCH2	chr1	120506197	-	CWH43	chr4	49032842	+
intron-3CDS	ENST00000493703	ENST00000226432		TCGA	RV	LUSC	TCGA-33-A4WN-01A	NOTCH2	chr1	120506197	-	CWH43	chr4	49032842	+
intron-3CDS	ENST00000493703	ENST00000513409		TCGA	RV	LUSC	TCGA-33-A4WN-01A	NOTCH2	chr1	120506197	-	CWH43	chr4	49032842	+
intron-3CDS	ENST00000409798	ENST00000361354		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
intron-3CDS	ENST00000409798	ENST00000360982		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
intron-intron	ENST00000409798	ENST00000478449		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
In-frame	ENST00000295119	ENST00000361354		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
In-frame	ENST00000295119	ENST00000360982		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
5CDS-intron	ENST00000295119	ENST00000478449		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000541912	ENST00000361354		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000541912	ENST00000360982		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000541912	ENST00000478449		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
3UTR-3CDS	ENST00000497330	ENST00000361354		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
3UTR-3CDS	ENST00000497330	ENST00000360982		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
3UTR-intron	ENST00000497330	ENST00000478449		TCGA	RV	LUSC	TCGA-43-8115-01A	NUP35	chr2	183989225	+	NCKAP1	chr2	183853914	-
Frame-shit	ENST00000196371	ENST00000335390		TCGA	RV	LUSC	TCGA-63-5131-01A	OXCT1	chr5	41870383	-	TMEM17	chr2	62729929	-
intron-3CDS	ENST00000509987	ENST00000335390		TCGA	RV	LUSC	TCGA-63-5131-01A	OXCT1	chr5	41870383	-	TMEM17	chr2	62729929	-
intron-3CDS	ENST00000512084	ENST00000335390		TCGA	RV	LUSC	TCGA-63-5131-01A	OXCT1	chr5	41870383	-	TMEM17	chr2	62729929	-
intron-3CDS	ENST00000510634	ENST00000335390		TCGA	RV	LUSC	TCGA-63-5131-01A	OXCT1	chr5	41870383	-	TMEM17	chr2	62729929	-
intron-3CDS	ENST00000513081	ENST00000335390		TCGA	RV	LUSC	TCGA-63-5131-01A	OXCT1	chr5	41870383	-	TMEM17	chr2	62729929	-
intron-intron	ENST00000406477	ENST00000553974		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000406477	ENST00000555474		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000406477	ENST00000216442		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000406477	ENST00000555431		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000406477	ENST00000554236		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000338758	ENST00000553974		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000338758	ENST00000555474		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000338758	ENST00000216442		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000338758	ENST00000555431		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
5CDS-intron	ENST00000338758	ENST00000554236		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000404989	ENST00000553974		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000404989	ENST00000555474		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000404989	ENST00000216442		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000404989	ENST00000555431		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000404989	ENST00000554236		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000477795	ENST00000553974		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000477795	ENST00000555474		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000477795	ENST00000216442		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000477795	ENST00000555431		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-intron	ENST00000477795	ENST00000554236		TCGA	RV	LUSC	TCGA-56-8629-01A	PARVB	chr22	44420331	+	ATP6V1D	chr14	67819757	-
intron-3CDS	ENST00000563679	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000563679	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000563679	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000563679	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000563679	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000563679	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-intron	ENST00000563679	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-intron	ENST00000563679	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3UTR	ENST00000563679	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000325823	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000325823	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000325823	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000325823	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000325823	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000325823	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-intron	ENST00000325823	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-intron	ENST00000325823	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3UTR	ENST00000325823	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000447912	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000447912	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000447912	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000447912	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000447912	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000447912	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-intron	ENST00000447912	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-intron	ENST00000447912	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
intron-3UTR	ENST00000447912	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000535621	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000535621	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000535621	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000535621	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000535621	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000535621	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000535621	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000535621	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000535621	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000455313	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000455313	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000455313	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000455313	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000455313	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000455313	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000455313	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000455313	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000455313	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000396410	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000396410	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000396410	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000396410	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000396410	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000396410	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000396410	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000396410	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000396410	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000569715	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000569715	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000569715	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000569715	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000569715	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000569715	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000569715	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000569715	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000569715	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000450288	ENST00000360655		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000450288	ENST00000396085		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000450288	ENST00000349880		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000450288	ENST00000396087		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000450288	ENST00000527559		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000450288	ENST00000540292		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000450288	ENST00000533917		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000450288	ENST00000311043		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000450288	ENST00000534229		TCGA	RV	LUSC	TCGA-85-8582-01A	PDXDC1	chr16	15069077	+	NAV2	chr11	19854030	+
In-frame	ENST00000257821	ENST00000529230		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000257821	ENST00000415402		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000257821	ENST00000312055		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000257821	ENST00000354558		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5CDS-intron	ENST00000257821	ENST00000532321		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000323180	ENST00000529230		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000323180	ENST00000415402		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000323180	ENST00000312055		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000323180	ENST00000354558		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5CDS-intron	ENST00000323180	ENST00000532321		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000418153	ENST00000529230		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000418153	ENST00000415402		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000418153	ENST00000312055		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
In-frame	ENST00000418153	ENST00000354558		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5CDS-intron	ENST00000418153	ENST00000532321		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5UTR-3CDS	ENST00000527753	ENST00000529230		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5UTR-3CDS	ENST00000527753	ENST00000415402		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5UTR-3CDS	ENST00000527753	ENST00000312055		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5UTR-3CDS	ENST00000527753	ENST00000354558		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5UTR-intron	ENST00000527753	ENST00000532321		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	PHF21A	chr11	45986866	-	CKAP5	chr11	46804918	-
5CDS-5UTR	ENST00000409426	ENST00000368910		TCGA	RV	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	TNFAIP8L2	chr1	151131142	+
5CDS-5UTR	ENST00000441902	ENST00000368910		TCGA	RV	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	TNFAIP8L2	chr1	151131142	+
5CDS-5UTR	ENST00000368890	ENST00000368910		TCGA	RV	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	TNFAIP8L2	chr1	151131142	+
5CDS-5UTR	ENST00000368888	ENST00000368910		TCGA	RV	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	TNFAIP8L2	chr1	151131142	+
intron-5UTR	ENST00000464105	ENST00000368910		TCGA	RV	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	TNFAIP8L2	chr1	151131142	+
intron-5UTR	ENST00000414290	ENST00000368910		TCGA	RV	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	TNFAIP8L2	chr1	151131142	+
Frame-shit	ENST00000327040	ENST00000397977		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
5CDS-3UTR	ENST00000327040	ENST00000521758		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
Frame-shit	ENST00000440756	ENST00000397977		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
5CDS-3UTR	ENST00000440756	ENST00000521758		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000286485	ENST00000397977		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000286485	ENST00000521758		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000428502	ENST00000397977		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000428502	ENST00000521758		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000523619	ENST00000397977		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000523619	ENST00000521758		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
5UTR-3CDS	ENST00000520789	ENST00000397977		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
5UTR-3UTR	ENST00000520789	ENST00000521758		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	PSD3	chr8	18793544	-	INTS10	chr8	19677084	+
5CDS-5UTR	ENST00000424085	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000424085	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000424085	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000424085	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000424085	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000424085	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000424085	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000424085	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000424085	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000424085	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000424085	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000257075	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000257075	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000257075	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000257075	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000257075	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373747	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373747	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373747	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373747	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373747	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000426105	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000426105	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000426105	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000426105	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000426105	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000440538	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000440538	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000440538	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000440538	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000440538	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373741	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373741	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373741	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373741	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373741	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000423018	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000423018	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000423018	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000423018	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000423018	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373742	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373742	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373742	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000373742	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-intron	ENST00000373742	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000264211		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000400422		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000602326		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000374935		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000374937		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-intron	ENST00000490546	ENST00000536266		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-intron	ENST00000490546	ENST00000374933		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-intron	ENST00000490546	ENST00000544689		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000356916		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-5UTR	ENST00000490546	ENST00000374927		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
intron-intron	ENST00000490546	ENST00000537738		TCGA	RV	LUSC	TCGA-34-5239-01A	PUM1	chr1	31532051	-	EIF4G3	chr1	21329301	-
5CDS-5UTR	ENST00000264158	ENST00000537343		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000264158	ENST00000295238		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000264158	ENST00000264157		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5UTR-5UTR	ENST00000539493	ENST00000537343		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5UTR-5UTR	ENST00000539493	ENST00000295238		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5UTR-5UTR	ENST00000539493	ENST00000264157		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000442034	ENST00000537343		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000442034	ENST00000295238		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000442034	ENST00000264157		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
intron-5UTR	ENST00000487003	ENST00000537343		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
intron-5UTR	ENST00000487003	ENST00000295238		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
intron-5UTR	ENST00000487003	ENST00000264157		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000425393	ENST00000537343		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000425393	ENST00000295238		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
5CDS-5UTR	ENST00000425393	ENST00000264157		TCGA	RV	LUSC	TCGA-18-3419-01A	RAB3GAP1	chr2	135815656	+	CCNT2	chr2	135694411	+
Frame-shit	ENST00000262241	ENST00000539563		TCGA	RV	LUSC	TCGA-77-7142-01A	RCOR1	chr14	103174920	+	LSAMP	chr3	115571464	-
Frame-shit	ENST00000262241	ENST00000490035		TCGA	RV	LUSC	TCGA-77-7142-01A	RCOR1	chr14	103174920	+	LSAMP	chr3	115571464	-
5CDS-5UTR	ENST00000262241	ENST00000498645		TCGA	RV	LUSC	TCGA-77-7142-01A	RCOR1	chr14	103174920	+	LSAMP	chr3	115571464	-
Frame-shit	ENST00000570597	ENST00000539563		TCGA	RV	LUSC	TCGA-77-7142-01A	RCOR1	chr14	103174920	+	LSAMP	chr3	115571464	-
Frame-shit	ENST00000570597	ENST00000490035		TCGA	RV	LUSC	TCGA-77-7142-01A	RCOR1	chr14	103174920	+	LSAMP	chr3	115571464	-
5CDS-5UTR	ENST00000570597	ENST00000498645		TCGA	RV	LUSC	TCGA-77-7142-01A	RCOR1	chr14	103174920	+	LSAMP	chr3	115571464	-
Frame-shit	ENST00000571816	ENST00000263088		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000571816	ENST00000572940		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000572430	ENST00000263088		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000572430	ENST00000572940		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000262482	ENST00000263088		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000262482	ENST00000572940		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000575111	ENST00000263088		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000575111	ENST00000572940		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000576229	ENST00000263088		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
Frame-shit	ENST00000576229	ENST00000572940		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
3UTR-3CDS	ENST00000570492	ENST00000263088		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
3UTR-3CDS	ENST00000570492	ENST00000572940		TCGA	RV	LUSC	TCGA-18-3415-01A	RNF167	chr17	4846236	+	PLD2	chr17	4720441	+
5CDS-5UTR	ENST00000324685	ENST00000337929		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000324685	ENST00000564089		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000324685	ENST00000395755		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000324685	ENST00000395754		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-intron	ENST00000324685	ENST00000564583		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000402121	ENST00000337929		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000402121	ENST00000564089		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000402121	ENST00000395755		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000402121	ENST00000395754		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-intron	ENST00000402121	ENST00000564583		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000563683	ENST00000337929		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000563683	ENST00000564089		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000563683	ENST00000395755		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000563683	ENST00000395754		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-intron	ENST00000563683	ENST00000564583		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000357890	ENST00000337929		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000357890	ENST00000564089		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000357890	ENST00000395755		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-5UTR	ENST00000357890	ENST00000395754		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
5CDS-intron	ENST00000357890	ENST00000564583		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000567365	ENST00000337929		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000567365	ENST00000564089		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000567365	ENST00000395755		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-5UTR	ENST00000567365	ENST00000395754		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
intron-intron	ENST00000567365	ENST00000564583		TCGA	RV	LUSC	TCGA-56-8629-01A	RNF40	chr16	30774880	+	IL21R	chr16	27441377	+
In-frame	ENST00000464233	ENST00000474524		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
In-frame	ENST00000464233	ENST00000273432		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000464233	ENST00000491549		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000464233	ENST00000422248		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000464233	ENST00000309237		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
Frame-shit	ENST00000436010	ENST00000474524		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
Frame-shit	ENST00000436010	ENST00000273432		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000436010	ENST00000491549		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000436010	ENST00000422248		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000436010	ENST00000309237		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
Frame-shit	ENST00000495273	ENST00000474524		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
Frame-shit	ENST00000495273	ENST00000273432		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000495273	ENST00000491549		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000495273	ENST00000422248		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000495273	ENST00000309237		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
Frame-shit	ENST00000467549	ENST00000474524		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
Frame-shit	ENST00000467549	ENST00000273432		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000467549	ENST00000491549		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000467549	ENST00000422248		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
5CDS-intron	ENST00000467549	ENST00000309237		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
intron-3CDS	ENST00000466906	ENST00000474524		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
intron-3CDS	ENST00000466906	ENST00000273432		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
intron-intron	ENST00000466906	ENST00000491549		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
intron-intron	ENST00000466906	ENST00000422248		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
intron-intron	ENST00000466906	ENST00000309237		TCGA	RV	LUSC	TCGA-66-2781-01A	ROBO1	chr3	78987751	-	MED12L	chr3	150911277	+
3UTR-5UTR	ENST00000492220	ENST00000369153		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
3UTR-5UTR	ENST00000492220	ENST00000369152		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
3UTR-intron	ENST00000492220	ENST00000476344		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
3UTR-5UTR	ENST00000492220	ENST00000369150		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000401000	ENST00000369153		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000401000	ENST00000369152		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-intron	ENST00000401000	ENST00000476344		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000401000	ENST00000369150		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000539519	ENST00000369153		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000539519	ENST00000369152		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-intron	ENST00000539519	ENST00000476344		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000539519	ENST00000369150		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000369067	ENST00000369153		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000369067	ENST00000369152		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-intron	ENST00000369067	ENST00000476344		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000369067	ENST00000369150		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000369068	ENST00000369153		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000369068	ENST00000369152		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-intron	ENST00000369068	ENST00000476344		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
5CDS-5UTR	ENST00000369068	ENST00000369150		TCGA	RV	LUSC	TCGA-63-6202-01A	RPRD2	chr1	150390201	+	BOLA1	chr1	149871563	+
intron-3CDS	ENST00000305557	ENST00000279804		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
intron-3CDS	ENST00000305557	ENST00000395019		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
Frame-shit	ENST00000272430	ENST00000279804		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
Frame-shit	ENST00000272430	ENST00000395019		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
intron-3CDS	ENST00000233330	ENST00000279804		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
intron-3CDS	ENST00000233330	ENST00000395019		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
5UTR-3CDS	ENST00000484453	ENST00000279804		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
5UTR-3CDS	ENST00000484453	ENST00000395019		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	RTKN	chr2	74668833	-	CTF1	chr16	30910736	+
In-frame	ENST00000043402	ENST00000572933		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
In-frame	ENST00000043402	ENST00000389173		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
5CDS-intron	ENST00000043402	ENST00000570791		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
5CDS-intron	ENST00000043402	ENST00000082259		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
intron-3CDS	ENST00000469601	ENST00000572933		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
intron-3CDS	ENST00000469601	ENST00000389173		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
intron-intron	ENST00000469601	ENST00000570791		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
intron-intron	ENST00000469601	ENST00000082259		TCGA	RV	LUSC	TCGA-96-A4JK-01A	RTN4R	chr22	20255594	-	DNAH2	chr17	7719889	+
Frame-shit	ENST00000415757	ENST00000306730		TCGA	RV	LUSC	TCGA-43-8116-01A	RYR3	chr15	34049797	+	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000415757	ENST00000558136		TCGA	RV	LUSC	TCGA-43-8116-01A	RYR3	chr15	34049797	+	AVEN	chr15	34168196	-
Frame-shit	ENST00000389232	ENST00000306730		TCGA	RV	LUSC	TCGA-43-8116-01A	RYR3	chr15	34049797	+	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000389232	ENST00000558136		TCGA	RV	LUSC	TCGA-43-8116-01A	RYR3	chr15	34049797	+	AVEN	chr15	34168196	-
intron-3CDS	ENST00000559917	ENST00000306730		TCGA	RV	LUSC	TCGA-43-8116-01A	RYR3	chr15	34049797	+	AVEN	chr15	34168196	-
intron-5UTR	ENST00000559917	ENST00000558136		TCGA	RV	LUSC	TCGA-43-8116-01A	RYR3	chr15	34049797	+	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000265361	ENST00000435819		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000309881		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000534394		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000441109		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000394788		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000447544		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000432207		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000544133		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000538969		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000265361	ENST00000433696		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-5UTR	ENST00000544525	ENST00000435819		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000309881		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000534394		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000441109		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000394788		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000447544		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000432207		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000544133		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000538969		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000544525	ENST00000433696		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-5UTR	ENST00000419255	ENST00000435819		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000309881		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000534394		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000441109		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000394788		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000447544		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000432207		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000544133		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000538969		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000419255	ENST00000433696		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-5UTR	ENST00000536800	ENST00000435819		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000309881		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000534394		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000441109		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000394788		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000447544		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000432207		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000544133		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000538969		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5CDS-intron	ENST00000536800	ENST00000433696		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-5UTR	ENST00000487621	ENST00000435819		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000309881		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000534394		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000441109		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000394788		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000447544		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000432207		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000544133		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000538969		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
5UTR-intron	ENST00000487621	ENST00000433696		TCGA	RV	LUSC	TCGA-22-5492-01A	SEMA3C	chr7	80545995	-	CD36	chr7	80115783	+
Frame-shit	ENST00000297261	ENST00000378641		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
Frame-shit	ENST00000297261	ENST00000338037		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
Frame-shit	ENST00000297261	ENST00000378637		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
5CDS-3UTR	ENST00000297261	ENST00000494924		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
intron-3CDS	ENST00000472308	ENST00000378641		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
intron-3CDS	ENST00000472308	ENST00000338037		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
intron-3CDS	ENST00000472308	ENST00000378637		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
intron-3UTR	ENST00000472308	ENST00000494924		TCGA	RV	LUSC	TCGA-77-A5G3-01A	SHH	chr7	155604517	-	PLCB1	chr20	8696911	+
In-frame	ENST00000265113	ENST00000373511		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
In-frame	ENST00000265113	ENST00000373498		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
In-frame	ENST00000265113	ENST00000350766		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-5UTR	ENST00000265113	ENST00000373503		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-5UTR	ENST00000265113	ENST00000394063		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-5UTR	ENST00000265113	ENST00000265960		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-intron	ENST00000265113	ENST00000373497		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-intron	ENST00000265113	ENST00000394060		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-intron	ENST00000265113	ENST00000483937		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-3CDS	ENST00000506725	ENST00000373511		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-3CDS	ENST00000506725	ENST00000373498		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-3CDS	ENST00000506725	ENST00000350766		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-5UTR	ENST00000506725	ENST00000373503		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-5UTR	ENST00000506725	ENST00000394063		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-5UTR	ENST00000506725	ENST00000265960		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-intron	ENST00000506725	ENST00000373497		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-intron	ENST00000506725	ENST00000394060		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
3UTR-intron	ENST00000506725	ENST00000483937		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
In-frame	ENST00000381918	ENST00000373511		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
In-frame	ENST00000381918	ENST00000373498		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
In-frame	ENST00000381918	ENST00000350766		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-5UTR	ENST00000381918	ENST00000373503		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-5UTR	ENST00000381918	ENST00000394063		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-5UTR	ENST00000381918	ENST00000265960		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-intron	ENST00000381918	ENST00000373497		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-intron	ENST00000381918	ENST00000394060		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
5CDS-intron	ENST00000381918	ENST00000483937		TCGA	RV	LUSC	TCGA-92-8065-01A	SLC1A3	chr5	36608706	+	MAPKAP1	chr9	128420078	-
In-frame	ENST00000316549	ENST00000490337		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
In-frame	ENST00000316549	ENST00000389636		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
In-frame	ENST00000316549	ENST00000471742		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
In-frame	ENST00000316549	ENST00000302490		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
In-frame	ENST00000316549	ENST00000389634		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
5CDS-intron	ENST00000316549	ENST00000497291		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000498717	ENST00000490337		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000498717	ENST00000389636		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000498717	ENST00000471742		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000498717	ENST00000302490		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
intron-3CDS	ENST00000498717	ENST00000389634		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
intron-intron	ENST00000498717	ENST00000497291		TCGA	RV	LUSC	TCGA-22-4604-01A	SLC9A9	chr3	143513843	-	KCNAB1	chr3	156139405	+
Frame-shit	ENST00000310926	ENST00000296084		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
Frame-shit	ENST00000310926	ENST00000427044		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
5CDS-intron	ENST00000310926	ENST00000484106		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
Frame-shit	ENST00000493729	ENST00000296084		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
Frame-shit	ENST00000493729	ENST00000427044		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
5CDS-intron	ENST00000493729	ENST00000484106		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
5UTR-3CDS	ENST00000478651	ENST00000296084		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
5UTR-3CDS	ENST00000478651	ENST00000427044		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
5UTR-intron	ENST00000478651	ENST00000484106		TCGA	RV	LUSC	TCGA-77-A5GH-01A	SLCO2A1	chr3	133748551	-	RYK	chr3	133907767	-
Frame-shit	ENST00000249373	ENST00000289407		TCGA	RV	LUSC	TCGA-NC-A5HT-01A	SMO	chr7	128829323	+	TSPAN33	chr7	128801520	+
In-frame	ENST00000567134	ENST00000334152		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000567134	ENST00000592581		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000567134	ENST00000391958		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000567134	ENST00000589522		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
Frame-shit	ENST00000308588	ENST00000334152		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000308588	ENST00000592581		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000308588	ENST00000391958		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000308588	ENST00000589522		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
In-frame	ENST00000564644	ENST00000334152		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000564644	ENST00000592581		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000564644	ENST00000391958		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000564644	ENST00000589522		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
Frame-shit	ENST00000371091	ENST00000334152		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000371091	ENST00000592581		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000371091	ENST00000391958		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000371091	ENST00000589522		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
Frame-shit	ENST00000564675	ENST00000334152		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000564675	ENST00000592581		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000564675	ENST00000391958		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000564675	ENST00000589522		TCGA	RV	LUSC	TCGA-18-3414-01A	SNUPN	chr15	75909749	-	ZNF233	chr19	44768467	+
Frame-shit	ENST00000361204	ENST00000531287		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
Frame-shit	ENST00000361204	ENST00000531452		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
Frame-shit	ENST00000361204	ENST00000530849		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
Frame-shit	ENST00000361204	ENST00000300650		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
5CDS-intron	ENST00000361204	ENST00000524917		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
intron-3CDS	ENST00000491541	ENST00000531287		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
intron-3CDS	ENST00000491541	ENST00000531452		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
intron-3CDS	ENST00000491541	ENST00000530849		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
intron-3CDS	ENST00000491541	ENST00000300650		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
intron-intron	ENST00000491541	ENST00000524917		TCGA	RV	LUSC	TCGA-56-A5DR-01A	SREBF2	chr22	42281015	+	RNF214	chr11	117150624	+
In-frame	ENST00000373943	ENST00000374076		TCGA	RV	LUSC	TCGA-66-2758-01A	STX12	chr1	28116142	+	TMEM222	chr1	27657211	+
In-frame	ENST00000373943	ENST00000608611		TCGA	RV	LUSC	TCGA-66-2758-01A	STX12	chr1	28116142	+	TMEM222	chr1	27657211	+
3UTR-3CDS	ENST00000468761	ENST00000374076		TCGA	RV	LUSC	TCGA-66-2758-01A	STX12	chr1	28116142	+	TMEM222	chr1	27657211	+
3UTR-3CDS	ENST00000468761	ENST00000608611		TCGA	RV	LUSC	TCGA-66-2758-01A	STX12	chr1	28116142	+	TMEM222	chr1	27657211	+
5CDS-5UTR	ENST00000456758	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000456758	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000456758	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000456758	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000456758	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000456758	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000456758	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000456758	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000457378	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000457378	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000457378	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000457378	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000457378	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000457378	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000457378	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000457378	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000389574	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000389574	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000389574	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000389574	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000389574	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000389574	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000389574	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000389574	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000452783	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000452783	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000452783	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000452783	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000452783	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000452783	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000452783	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000452783	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000405266	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000405266	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000405266	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000405266	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000405266	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000405266	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000405266	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000405266	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000401592	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000401592	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000401592	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000401592	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000401592	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000401592	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000401592	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000401592	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000403868	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000403868	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000403868	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000403868	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000403868	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000403868	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000403868	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000403868	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000425407	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000425407	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000425407	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000425407	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000425407	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000425407	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-5UTR	ENST00000425407	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
5CDS-intron	ENST00000425407	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000469755	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000469755	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000469755	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000469755	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000469755	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000469755	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000469755	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000469755	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000413514	ENST00000402384		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000413514	ENST00000406470		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000413514	ENST00000265577		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000413514	ENST00000396675		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000413514	ENST00000401396		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000413514	ENST00000422063		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-5UTR	ENST00000413514	ENST00000407906		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-intron	ENST00000413514	ENST00000476942		TCGA	RV	LUSC	TCGA-66-2770-01A	SUN1	chr7	893255	+	ICA1	chr7	8275635	-
intron-3CDS	ENST00000330266	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000330266	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000330266	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000330266	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000330266	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
In-frame	ENST00000405975	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
In-frame	ENST00000405975	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000405975	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000405975	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000405975	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
In-frame	ENST00000415080	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
In-frame	ENST00000415080	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000415080	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000415080	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000415080	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
Frame-shit	ENST00000405006	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
Frame-shit	ENST00000405006	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000405006	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000405006	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
5CDS-intron	ENST00000405006	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000485353	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000485353	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000485353	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000485353	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000485353	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000402360	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000402360	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000402360	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000402360	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000402360	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000404790	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000404790	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000404790	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000404790	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000404790	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000403856	ENST00000318522		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000403856	ENST00000402711		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000403856	ENST00000482660		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000403856	ENST00000401738		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-intron	ENST00000403856	ENST00000453191		TCGA	RV	LUSC	TCGA-66-2756-01A	THADA	chr2	43571261	-	EML4	chr2	42556026	+
intron-3CDS	ENST00000432054	ENST00000358701		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	TMCC1	chr3	129546646	-	QSOX2	chr9	139116755	-
In-frame	ENST00000393238	ENST00000358701		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	TMCC1	chr3	129546646	-	QSOX2	chr9	139116755	-
Frame-shit	ENST00000426664	ENST00000358701		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	TMCC1	chr3	129546646	-	QSOX2	chr9	139116755	-
intron-3CDS	ENST00000329333	ENST00000358701		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	TMCC1	chr3	129546646	-	QSOX2	chr9	139116755	-
intron-3CDS	ENST00000515024	ENST00000358701		TCGA	RV	LUSC	TCGA-NC-A5HN-01A	TMCC1	chr3	129546646	-	QSOX2	chr9	139116755	-
Frame-shit	ENST00000297632	ENST00000378204		TCGA	RV	LUSC	TCGA-85-8664-01A	TMEM65	chr8	125384095	-	EXT1	chr8	118849440	-
In-frame	ENST00000264731	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000264731	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000264731	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000382063	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000382063	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000382063	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000418709	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000418709	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000418709	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000320472	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000320472	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000320472	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000392460	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000392460	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000392460	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000440651	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000440651	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000440651	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000354600	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000354600	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000354600	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000437221	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000437221	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000437221	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000392463	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000392463	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000392463	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000392461	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000392461	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000392461	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000456148	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000456148	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000456148	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000449992	ENST00000433971		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000449992	ENST00000345063		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000449992	ENST00000488841		TCGA	RV	LUSC	TCGA-77-A5G7-01B	TP63	chr3	189349366	+	TPRG1	chr3	189028175	+
In-frame	ENST00000358465	ENST00000373381		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
In-frame	ENST00000358465	ENST00000373380		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000358465	ENST00000373377		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-5UTR	ENST00000358465	ENST00000373388		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000358465	ENST00000489419		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000358465	ENST00000338325		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
In-frame	ENST00000369543	ENST00000373381		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
In-frame	ENST00000369543	ENST00000373380		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000369543	ENST00000373377		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-5UTR	ENST00000369543	ENST00000373388		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000369543	ENST00000489419		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000369543	ENST00000338325		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
Frame-shit	ENST00000450349	ENST00000373381		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
Frame-shit	ENST00000450349	ENST00000373380		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000450349	ENST00000373377		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-5UTR	ENST00000450349	ENST00000373388		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000450349	ENST00000489419		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
5CDS-intron	ENST00000450349	ENST00000338325		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
intron-3CDS	ENST00000476908	ENST00000373381		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
intron-3CDS	ENST00000476908	ENST00000373380		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
intron-intron	ENST00000476908	ENST00000373377		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
intron-5UTR	ENST00000476908	ENST00000373388		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
intron-intron	ENST00000476908	ENST00000489419		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
intron-intron	ENST00000476908	ENST00000338325		TCGA	RV	LUSC	TCGA-52-7809-01A	TRIM33	chr1	114948032	-	CSMD2	chr1	34128692	-
Frame-shit	ENST00000269383	ENST00000307877		TCGA	RV	LUSC	TCGA-60-2706-01A	TRIM65	chr17	73887894	-	SRP68	chr17	74053624	-
Frame-shit	ENST00000269383	ENST00000539137		TCGA	RV	LUSC	TCGA-60-2706-01A	TRIM65	chr17	73887894	-	SRP68	chr17	74053624	-
Frame-shit	ENST00000269383	ENST00000355113		TCGA	RV	LUSC	TCGA-60-2706-01A	TRIM65	chr17	73887894	-	SRP68	chr17	74053624	-
5CDS-intron	ENST00000269383	ENST00000602720		TCGA	RV	LUSC	TCGA-60-2706-01A	TRIM65	chr17	73887894	-	SRP68	chr17	74053624	-
5CDS-intron	ENST00000269383	ENST00000542536		TCGA	RV	LUSC	TCGA-60-2706-01A	TRIM65	chr17	73887894	-	SRP68	chr17	74053624	-
In-frame	ENST00000557636	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000557636	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-5UTR	ENST00000557636	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-intron	ENST00000557636	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-3UTR	ENST00000557636	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000286650	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-5UTR	ENST00000286650	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-intron	ENST00000286650	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3UTR	ENST00000286650	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000298832	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-5UTR	ENST00000298832	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-intron	ENST00000298832	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-3UTR	ENST00000298832	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000556893	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-5UTR	ENST00000556893	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-intron	ENST00000556893	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-3UTR	ENST00000556893	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
In-frame	ENST00000554510	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-5UTR	ENST00000554510	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-intron	ENST00000554510	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
5CDS-3UTR	ENST00000554510	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000556977	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-5UTR	ENST00000556977	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-intron	ENST00000556977	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3UTR	ENST00000556977	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000553525		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000555571		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000553530		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000556437		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000355512		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000406236		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000404301		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000407322		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000402788		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3CDS	ENST00000555422	ENST00000343854		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-5UTR	ENST00000555422	ENST00000434263		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-intron	ENST00000555422	ENST00000554782		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
intron-3UTR	ENST00000555422	ENST00000553690		TCGA	RV	LUSC	TCGA-77-A5G6-01A	TTLL5	chr14	76249873	+	RGS6	chr14	72921236	+
Frame-shit	ENST00000271469	ENST00000530878		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000271469	ENST00000361897		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000271469	ENST00000493151		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000271469	ENST00000454693		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000367926	ENST00000530878		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000367926	ENST00000361897		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000367926	ENST00000493151		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000367926	ENST00000454693		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
intron-3CDS	ENST00000476240	ENST00000530878		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
intron-3CDS	ENST00000476240	ENST00000361897		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
intron-intron	ENST00000476240	ENST00000493151		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
intron-intron	ENST00000476240	ENST00000454693		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000367924	ENST00000530878		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000367924	ENST00000361897		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000367924	ENST00000493151		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000367924	ENST00000454693		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000367925	ENST00000530878		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
Frame-shit	ENST00000367925	ENST00000361897		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000367925	ENST00000493151		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
5CDS-intron	ENST00000367925	ENST00000454693		TCGA	RV	LUSC	TCGA-77-8139-01A	UAP1	chr1	162536138	+	NOS1AP	chr1	162257134	+
In-frame	ENST00000449054	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000449054	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000449054	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
5CDS-intron	ENST00000449054	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000379238	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000379238	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000379238	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
5CDS-intron	ENST00000379238	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000360802	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000360802	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000360802	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
5CDS-intron	ENST00000360802	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000379239	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000379239	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000379239	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
5CDS-intron	ENST00000379239	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000539807	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000539807	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000539807	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-intron	ENST00000539807	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000418786	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000418786	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
In-frame	ENST00000418786	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
5CDS-intron	ENST00000418786	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000379225	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000379225	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000379225	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-intron	ENST00000379225	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000379235	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000379235	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000379235	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-intron	ENST00000379235	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000480885	ENST00000523719		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000480885	ENST00000276609		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-3CDS	ENST00000480885	ENST00000309536		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
intron-intron	ENST00000480885	ENST00000520249		TCGA	RV	LUSC	TCGA-77-7138-01A	UBAP2	chr9	33960824	-	SLC26A7	chr8	92301364	+
Frame-shit	ENST00000253251	ENST00000294489		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000253251	ENST00000376057		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000253251	ENST00000509009		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000253251	ENST00000376061		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000253251	ENST00000513143		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000253251	ENST00000487038		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000253251	ENST00000475043		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000377157	ENST00000294489		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000377157	ENST00000376057		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000377157	ENST00000509009		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000377157	ENST00000376061		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000377157	ENST00000513143		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000377157	ENST00000487038		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000377157	ENST00000475043		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000343090	ENST00000294489		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000343090	ENST00000376057		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000343090	ENST00000509009		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000343090	ENST00000376061		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000343090	ENST00000513143		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000343090	ENST00000487038		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
5CDS-5UTR	ENST00000343090	ENST00000475043		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-3CDS	ENST00000377153	ENST00000294489		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-3CDS	ENST00000377153	ENST00000376057		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-3CDS	ENST00000377153	ENST00000509009		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000377153	ENST00000376061		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000377153	ENST00000513143		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000377153	ENST00000487038		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000377153	ENST00000475043		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-3CDS	ENST00000475795	ENST00000294489		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-3CDS	ENST00000475795	ENST00000376057		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-3CDS	ENST00000475795	ENST00000509009		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000475795	ENST00000376061		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000475795	ENST00000513143		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000475795	ENST00000487038		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
intron-5UTR	ENST00000475795	ENST00000475043		TCGA	RV	LUSC	TCGA-56-A4BW-01A	UBE4B	chr1	10228328	+	PDPN	chr1	13933668	+
Frame-shit	ENST00000253251	ENST00000377748		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000253251	ENST00000377732		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000253251	ENST00000400915		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000253251	ENST00000377740		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000253251	ENST00000377737		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000253251	ENST00000537245		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000253251	ENST00000544978		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000253251	ENST00000400913		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000253251	ENST00000340850		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000253251	ENST00000377725		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000253251	ENST00000377728		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000253251	ENST00000535355		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-3CDS	ENST00000377157	ENST00000377748		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-5UTR	ENST00000377157	ENST00000377732		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-5UTR	ENST00000377157	ENST00000400915		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-5UTR	ENST00000377157	ENST00000377740		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-5UTR	ENST00000377157	ENST00000377737		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-5UTR	ENST00000377157	ENST00000537245		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-5UTR	ENST00000377157	ENST00000544978		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-intron	ENST00000377157	ENST00000400913		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-intron	ENST00000377157	ENST00000340850		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-intron	ENST00000377157	ENST00000377725		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-intron	ENST00000377157	ENST00000377728		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5UTR-intron	ENST00000377157	ENST00000535355		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000343090	ENST00000377748		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000343090	ENST00000377732		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000343090	ENST00000400915		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000343090	ENST00000377740		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000343090	ENST00000377737		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000343090	ENST00000537245		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000343090	ENST00000544978		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000343090	ENST00000400913		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000343090	ENST00000340850		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000343090	ENST00000377725		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000343090	ENST00000377728		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000343090	ENST00000535355		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377153	ENST00000377748		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377153	ENST00000377732		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377153	ENST00000400915		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377153	ENST00000377740		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377153	ENST00000377737		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377153	ENST00000537245		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377153	ENST00000544978		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377153	ENST00000400913		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377153	ENST00000340850		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377153	ENST00000377725		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377153	ENST00000377728		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377153	ENST00000535355		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-3CDS	ENST00000475795	ENST00000377748		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000475795	ENST00000377732		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000475795	ENST00000400915		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000475795	ENST00000377740		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000475795	ENST00000377737		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000475795	ENST00000537245		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000475795	ENST00000544978		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000475795	ENST00000400913		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000475795	ENST00000340850		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000475795	ENST00000377725		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000475795	ENST00000377728		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000475795	ENST00000535355		TCGA	RV	LUSC	TCGA-56-7730-01A	UBE4B	chr1	10093752	+	PLEKHG5	chr1	6556629	-
In-frame	ENST00000279907	ENST00000547776		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000279907	ENST00000329257		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000279907	ENST00000547010		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000341752		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000549558		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000550693		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000279907	ENST00000549025		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000279907	ENST00000549493		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000279907	ENST00000547446		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000333732		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000546568		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000332712		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000546960		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000279907	ENST00000550833		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000356828	ENST00000547776		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000356828	ENST00000329257		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000356828	ENST00000547010		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000341752		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000549558		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000550693		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000356828	ENST00000549025		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000356828	ENST00000549493		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000356828	ENST00000547446		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000333732		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000546568		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000332712		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000546960		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000356828	ENST00000550833		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000545232	ENST00000547776		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000545232	ENST00000329257		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000545232	ENST00000547010		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000341752		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000549558		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000550693		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000545232	ENST00000549025		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000545232	ENST00000549493		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000545232	ENST00000547446		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000333732		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000546568		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000332712		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000546960		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000545232	ENST00000550833		TCGA	RV	LUSC	TCGA-22-5473-01A	UHRF1BP1L	chr12	100480053	-	ANKS1B	chr12	99548173	-
5UTR-5UTR	ENST00000430629	ENST00000374005		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000399173		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000545953		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000430629	ENST00000374004		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000468038		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000374005		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000399173		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000545953		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000536657	ENST00000374004		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000468038		TCGA	RV	LUSC	TCGA-66-2759-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
Frame-shit	ENST00000427277	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000427277	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000427277	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5CDS-intron	ENST00000427277	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000297954	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000297954	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000297954	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5CDS-intron	ENST00000297954	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000395475	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000395475	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000395475	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
3UTR-intron	ENST00000395475	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5UTR-3CDS	ENST00000356055	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5UTR-3CDS	ENST00000356055	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5UTR-3CDS	ENST00000356055	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5UTR-intron	ENST00000356055	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000349097	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000349097	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000349097	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5CDS-intron	ENST00000349097	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000395477	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000395477	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
Frame-shit	ENST00000395477	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
5CDS-intron	ENST00000395477	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000471076	ENST00000375807		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000471076	ENST00000339901		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000471076	ENST00000534113		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
intron-intron	ENST00000471076	ENST00000470305		TCGA	RV	LUSC	TCGA-22-5483-01A	WNK2	chr9	96026315	+	SECISBP2	chr9	91972326	+
In-frame	ENST00000344157	ENST00000286657		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
5CDS-intron	ENST00000344157	ENST00000505193		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
In-frame	ENST00000355665	ENST00000286657		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
5CDS-intron	ENST00000355665	ENST00000505193		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
In-frame	ENST00000579690	ENST00000286657		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
5CDS-intron	ENST00000579690	ENST00000505193		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
intron-3CDS	ENST00000552105	ENST00000286657		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
intron-intron	ENST00000552105	ENST00000505193		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
intron-3CDS	ENST00000550485	ENST00000286657		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
intron-intron	ENST00000550485	ENST00000505193		TCGA	RV	LUSC	TCGA-66-2782-01A	YTHDC1	chr4	69202745	-	ADAMTS3	chr4	73176898	-
5UTR-3CDS	ENST00000462705	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
5UTR-intron	ENST00000462705	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
5UTR-intron	ENST00000462705	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
5UTR-intron	ENST00000462705	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000393785	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000393785	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000393785	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000393785	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000481632	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000481632	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000481632	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000481632	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000471418	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000471418	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000471418	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000471418	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000357258	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000357258	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000357258	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000357258	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000464560	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000464560	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000464560	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000464560	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000488663	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000488663	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000488663	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000488663	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-3CDS	ENST00000474710	ENST00000393845		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000474710	ENST00000295868		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000474710	ENST00000475568		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
intron-intron	ENST00000474710	ENST00000308346		TCGA	RV	LUSC	TCGA-68-8250-01A	ZBTB20	chr3	114790066	-	WDR52	chr3	113022964	-
5UTR-3CDS	ENST00000268489	ENST00000359154		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000268489	ENST00000448661		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000268489	ENST00000569174		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000268489	ENST00000356003		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
5UTR-3UTR	ENST00000268489	ENST00000544162		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
5UTR-5UTR	ENST00000268489	ENST00000542271		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
5UTR-intron	ENST00000268489	ENST00000568684		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000397992	ENST00000359154		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000397992	ENST00000448661		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000397992	ENST00000569174		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000397992	ENST00000356003		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3UTR	ENST00000397992	ENST00000544162		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-5UTR	ENST00000397992	ENST00000542271		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-intron	ENST00000397992	ENST00000568684		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000359154		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000448661		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000569174		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000356003		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-3UTR	ENST00000558842	ENST00000544162		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-5UTR	ENST00000558842	ENST00000542271		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
intron-intron	ENST00000558842	ENST00000568684		TCGA	RV	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73081651	-	WWP2	chr16	69874029	+
In-frame	ENST00000396868	ENST00000400256		TCGA	RV	LUSC	TCGA-60-2712-01A	ZNF200	chr16	3282421	-	COLEC12	chr18	480757	-
Frame-shit	ENST00000414144	ENST00000400256		TCGA	RV	LUSC	TCGA-60-2712-01A	ZNF200	chr16	3282421	-	COLEC12	chr18	480757	-
In-frame	ENST00000396871	ENST00000400256		TCGA	RV	LUSC	TCGA-60-2712-01A	ZNF200	chr16	3282421	-	COLEC12	chr18	480757	-
Frame-shit	ENST00000431561	ENST00000400256		TCGA	RV	LUSC	TCGA-60-2712-01A	ZNF200	chr16	3282421	-	COLEC12	chr18	480757	-
Frame-shit	ENST00000396870	ENST00000400256		TCGA	RV	LUSC	TCGA-60-2712-01A	ZNF200	chr16	3282421	-	COLEC12	chr18	480757	-
Frame-shit	ENST00000575948	ENST00000400256		TCGA	RV	LUSC	TCGA-60-2712-01A	ZNF200	chr16	3282421	-	COLEC12	chr18	480757	-
3UTR-5UTR	ENST00000513929	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
3UTR-5UTR	ENST00000513929	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
3UTR-intron	ENST00000513929	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
5UTR-5UTR	ENST00000253144	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
5UTR-5UTR	ENST00000253144	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
5UTR-intron	ENST00000253144	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
5UTR-5UTR	ENST00000511593	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
5UTR-5UTR	ENST00000511593	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
5UTR-intron	ENST00000511593	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000449416	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000449416	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-intron	ENST00000449416	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000411977	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000411977	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-intron	ENST00000411977	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000511154	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000511154	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-intron	ENST00000511154	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000513999	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000513999	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-intron	ENST00000513999	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000512387	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000512387	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-intron	ENST00000512387	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000513265	ENST00000301295		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-5UTR	ENST00000513265	ENST00000346986		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
intron-intron	ENST00000513265	ENST00000587891		TCGA	RV	LUSC	TCGA-60-2706-01A	ZNF331	chr19	54025938	+	NLRP4	chr19	56363382	+
Frame-shit	ENST00000261560	ENST00000295454		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
5CDS-5UTR	ENST00000261560	ENST00000538619		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
5CDS-3UTR	ENST00000261560	ENST00000509366		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
Frame-shit	ENST00000599548	ENST00000295454		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
5CDS-5UTR	ENST00000599548	ENST00000538619		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
5CDS-3UTR	ENST00000599548	ENST00000509366		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
Frame-shit	ENST00000595401	ENST00000295454		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
5CDS-5UTR	ENST00000595401	ENST00000538619		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
5CDS-3UTR	ENST00000595401	ENST00000509366		TCGA	RV	LUSC	TCGA-34-5241-01A	ZNF430	chr19	21216990	+	GABRB1	chr4	47033931	+
In-frame	ENST00000329285	ENST00000262631		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
In-frame	ENST00000329285	ENST00000595652		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
In-frame	ENST00000329285	ENST00000415950		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000329285	ENST00000596348		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
In-frame	ENST00000587354	ENST00000262631		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
In-frame	ENST00000587354	ENST00000595652		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
In-frame	ENST00000587354	ENST00000415950		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000587354	ENST00000596348		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000588760	ENST00000262631		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000588760	ENST00000595652		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000588760	ENST00000415950		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000588760	ENST00000596348		TCGA	RV	LUSC	TCGA-43-7657-01A	ZNF599	chr19	35258221	-	SCN1B	chr19	35523432	+
5CDS-5UTR	ENST00000225402	ENST00000331825		TCGA	RV	LUSC	TCGA-O2-A52S-01A	AATF	chr17	35378313	+	FTL	chr19	49468566	+
intron-5UTR	ENST00000590321	ENST00000331825		TCGA	RV	LUSC	TCGA-O2-A52S-01A	AATF	chr17	35378313	+	FTL	chr19	49468566	+
5CDS-5UTR	ENST00000374736	ENST00000373659		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB6	chr9	125674360	-
intron-5UTR	ENST00000494467	ENST00000373659		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB6	chr9	125674360	-
5CDS-5UTR	ENST00000423487	ENST00000373659		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB6	chr9	125674360	-
5CDS-5UTR	ENST00000374733	ENST00000373659		TCGA	RV	LUSC	TCGA-39-5028-01A	ABCA1	chr9	107645320	-	ZBTB6	chr9	125674360	-
In-frame	ENST00000409979	ENST00000304593		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000476924		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000353339		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000354503		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000409565		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000409616		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000337110		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000524634		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000349901		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409979	ENST00000392059		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
In-frame	ENST00000310078	ENST00000304593		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000476924		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000353339		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000354503		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000409565		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000409616		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000337110		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000524634		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000349901		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000310078	ENST00000392059		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
In-frame	ENST00000409315	ENST00000304593		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000476924		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000353339		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000354503		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000409565		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000409616		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000337110		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000524634		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000349901		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409315	ENST00000392059		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
In-frame	ENST00000373671	ENST00000304593		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000476924		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000353339		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000354503		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000409565		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000409616		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000337110		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000524634		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000349901		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000373671	ENST00000392059		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
In-frame	ENST00000409171	ENST00000304593		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000476924		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000353339		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000354503		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000409565		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000409616		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000337110		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000524634		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000349901		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
5CDS-3UTR	ENST00000409171	ENST00000392059		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3CDS	ENST00000486932	ENST00000304593		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000476924		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000353339		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000354503		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000409565		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000409616		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000337110		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000524634		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000349901		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
intron-3UTR	ENST00000486932	ENST00000392059		TCGA	RV	LUSC	TCGA-43-8116-01A	AGFG1	chr2	228337304	+	MFF	chr2	228220393	+
Frame-shit	ENST00000377275	ENST00000377304		TCGA	RV	LUSC	TCGA-92-8064-01A	ARL5B	chr10	18957606	+	NSUN6	chr10	18840900	-
5CDS-intron	ENST00000377275	ENST00000493816		TCGA	RV	LUSC	TCGA-92-8064-01A	ARL5B	chr10	18957606	+	NSUN6	chr10	18840900	-
5UTR-intron	ENST00000312275	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000312275	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000312275	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000312275	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000312275	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000312275	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
3UTR-intron	ENST00000498159	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
3UTR-intron	ENST00000498159	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
3UTR-intron	ENST00000498159	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
3UTR-intron	ENST00000498159	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
3UTR-intron	ENST00000498159	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
3UTR-intron	ENST00000498159	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000468043	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000468043	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000468043	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000468043	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000468043	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000468043	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000459838	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000459838	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000459838	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000459838	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000459838	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000459838	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000461040	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000461040	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000461040	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000461040	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000461040	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000461040	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000449199	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000449199	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000449199	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000449199	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000449199	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000449199	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000426338	ENST00000310236		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000426338	ENST00000204604		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000426338	ENST00000450923		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000426338	ENST00000348986		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000426338	ENST00000482805		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5UTR-intron	ENST00000426338	ENST00000545352		TCGA	RV	LUSC	TCGA-39-5019-01A	C3orf55	chr3	157261298	+	CHRD	chr3	184106375	+
5CDS-5UTR	ENST00000264645	ENST00000584601		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000264645	ENST00000406381		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000541774		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000445658		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000540147		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000584450		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000269571		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-5UTR	ENST00000264645	ENST00000578199		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000540042		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
5CDS-intron	ENST00000264645	ENST00000584888		TCGA	RV	LUSC	TCGA-L3-A524-01A	CASC3	chr17	38297860	+	ERBB2	chr17	37844949	+
3UTR-intron	ENST00000540468	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000540468	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000540468	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000539919	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000539919	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
3UTR-intron	ENST00000539919	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000258091	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000258091	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000258091	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000398422	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000398422	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000398422	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000537131	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000537131	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000537131	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000538797	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000538797	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000538797	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
intron-intron	ENST00000473786	ENST00000367545		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
intron-intron	ENST00000473786	ENST00000367526		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
intron-intron	ENST00000473786	ENST00000480333		TCGA	RV	LUSC	TCGA-85-6560-01A	CCT7	chr2	73480132	+	UTRN	chr6	144665237	+
intron-3CDS	ENST00000336219	ENST00000547315		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
intron-3UTR	ENST00000336219	ENST00000549584		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
intron-intron	ENST00000336219	ENST00000550614		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
intron-intron	ENST00000336219	ENST00000549240		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
3UTR-3CDS	ENST00000392590	ENST00000547315		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
3UTR-3UTR	ENST00000392590	ENST00000549584		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
3UTR-intron	ENST00000392590	ENST00000550614		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
3UTR-intron	ENST00000392590	ENST00000549240		TCGA	RV	LUSC	TCGA-98-A538-01A	CDCA4	chr14	105477497	-	C14orf79	chr14	105455280	+
3UTR-3CDS	ENST00000468573	ENST00000368079		TCGA	RV	LUSC	TCGA-46-3765-01A	CHRM3	chr1	239990678	+	CASQ1	chr1	160162592	+
3UTR-3CDS	ENST00000468573	ENST00000368078		TCGA	RV	LUSC	TCGA-46-3765-01A	CHRM3	chr1	239990678	+	CASQ1	chr1	160162592	+
3UTR-intron	ENST00000468573	ENST00000467691		TCGA	RV	LUSC	TCGA-46-3765-01A	CHRM3	chr1	239990678	+	CASQ1	chr1	160162592	+
5UTR-3CDS	ENST00000255380	ENST00000368079		TCGA	RV	LUSC	TCGA-46-3765-01A	CHRM3	chr1	239990678	+	CASQ1	chr1	160162592	+
5UTR-3CDS	ENST00000255380	ENST00000368078		TCGA	RV	LUSC	TCGA-46-3765-01A	CHRM3	chr1	239990678	+	CASQ1	chr1	160162592	+
5UTR-intron	ENST00000255380	ENST00000467691		TCGA	RV	LUSC	TCGA-46-3765-01A	CHRM3	chr1	239990678	+	CASQ1	chr1	160162592	+
5UTR-3CDS	ENST00000546079	ENST00000587331		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
5UTR-3CDS	ENST00000546079	ENST00000405314		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000541297	ENST00000587331		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000541297	ENST00000405314		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000337392	ENST00000587331		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
In-frame	ENST00000337392	ENST00000405314		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000589158	ENST00000587331		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000589158	ENST00000405314		TCGA	RV	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45465332	+	CEACAM16	chr19	45213768	+
5UTR-3CDS	ENST00000317147	ENST00000245206		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-3CDS	ENST00000317147	ENST00000434819		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-5UTR	ENST00000317147	ENST00000564400		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-3CDS	ENST00000569240	ENST00000245206		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-3CDS	ENST00000569240	ENST00000434819		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-5UTR	ENST00000569240	ENST00000564400		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-3CDS	ENST00000441024	ENST00000245206		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-3CDS	ENST00000441024	ENST00000434819		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5UTR-5UTR	ENST00000441024	ENST00000564400		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000569732	ENST00000245206		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000569732	ENST00000434819		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
intron-5UTR	ENST00000569732	ENST00000564400		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000245138	ENST00000245206		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
intron-3CDS	ENST00000245138	ENST00000434819		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
intron-5UTR	ENST00000245138	ENST00000564400		TCGA	RV	LUSC	TCGA-98-A539-01A	CNOT1	chr16	58663632	-	GOT2	chr16	58757806	-
5CDS-5UTR	ENST00000524630	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000524630	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000524630	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000524630	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000524630	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000524630	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529919	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529919	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529919	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529919	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529919	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529919	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399039	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399039	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399039	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399039	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399039	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399039	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000360682	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000360682	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000360682	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000360682	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000360682	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000360682	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361796	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361796	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361796	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361796	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361796	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361796	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361391	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361391	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361391	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361391	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361391	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361391	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530094	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530094	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530094	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530094	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530094	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530094	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000428599	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000428599	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000428599	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000428599	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000428599	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000428599	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361332	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361332	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361332	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361332	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361332	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000361332	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000527467	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000527467	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000527467	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000527467	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000527467	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000527467	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000415361	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000415361	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000415361	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000415361	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000415361	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000415361	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532245	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532245	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532245	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532245	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532245	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532245	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532463	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532463	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532463	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532463	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532463	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532463	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528232	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528232	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528232	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528232	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528232	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528232	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529986	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529986	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529986	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529986	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529986	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529986	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000531014	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000531014	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000531014	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000531014	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000531014	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000531014	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000358694	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000358694	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000358694	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000358694	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000358694	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000358694	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526772	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526772	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526772	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526772	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526772	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526772	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532787	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532787	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532787	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532787	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532787	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532787	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000533667	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000533667	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000533667	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000533667	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000533667	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000533667	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529873	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529873	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529873	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529873	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529873	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529873	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000525902	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000525902	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000525902	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000525902	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000525902	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000525902	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529526	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529526	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529526	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529526	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529526	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000529526	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532649	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532649	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532649	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532649	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532649	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532649	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000426142	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000426142	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000426142	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000426142	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000426142	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000426142	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532844	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532844	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532844	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532844	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532844	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000532844	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528621	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528621	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528621	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528621	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528621	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000528621	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399050	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399050	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399050	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399050	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399050	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000399050	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526357	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526357	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526357	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526357	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526357	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526357	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530748	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530748	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530748	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530748	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530748	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000530748	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000534579	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000534579	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000534579	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000534579	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000534579	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000534579	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526938	ENST00000529052		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526938	ENST00000531526		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526938	ENST00000389968		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526938	ENST00000401752		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526938	ENST00000325468		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-5UTR	ENST00000526938	ENST00000536139		TCGA	RV	LUSC	TCGA-68-8251-01A	CTNND1	chr11	57572252	+	GYLTL1B	chr11	45944372	+
5CDS-intron	ENST00000326840	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326840	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5CDS-intron	ENST00000326857	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
5UTR-intron	ENST00000469648	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2704-01A	DCBLD2	chr3	98568305	-	KALRN	chr3	124193510	+
Frame-shit	ENST00000264057	ENST00000347464		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
Frame-shit	ENST00000264057	ENST00000392017		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
Frame-shit	ENST00000264057	ENST00000373525		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
Frame-shit	ENST00000264057	ENST00000392020		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
Frame-shit	ENST00000264057	ENST00000392018		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
5CDS-intron	ENST00000264057	ENST00000498620		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000409813	ENST00000347464		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000409813	ENST00000392017		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000409813	ENST00000373525		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000409813	ENST00000392020		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000409813	ENST00000392018		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-intron	ENST00000409813	ENST00000498620		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000489613	ENST00000347464		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000489613	ENST00000392017		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000489613	ENST00000373525		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000489613	ENST00000392020		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000489613	ENST00000392018		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
intron-intron	ENST00000489613	ENST00000498620		TCGA	RV	LUSC	TCGA-22-1017-01A	DGKD	chr2	234263320	+	ATG16L1	chr2	234164748	+
In-frame	ENST00000421834	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000421834	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000421834	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000421834	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370769	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370769	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370769	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000370769	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000312431	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000312431	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000312431	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000312431	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370754	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370754	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370754	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000370754	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370788	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370788	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000370788	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000370788	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000361203	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000361203	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000361203	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000361203	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000244364	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000244364	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000244364	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000244364	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000446842	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000446842	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
In-frame	ENST00000446842	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-intron	ENST00000446842	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000340834	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000340834	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000340834	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-intron	ENST00000340834	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000370765	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000370765	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000370765	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-intron	ENST00000370765	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000518935	ENST00000280979		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000518935	ENST00000557354		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-3CDS	ENST00000518935	ENST00000557272		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
intron-intron	ENST00000518935	ENST00000554449		TCGA	RV	LUSC	TCGA-56-7822-01A	DST	chr6	56464867	-	AKAP6	chr14	33147517	+
5CDS-5UTR	ENST00000447467	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000447467	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000324972	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000324972	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000537881	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000537881	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000437599	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000437599	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000359388	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000359388	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000413338	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000413338	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000457059	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
5CDS-5UTR	ENST00000457059	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000497626	ENST00000306621		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000497626	ENST00000503860		TCGA	RV	LUSC	TCGA-43-7658-01A	DYNC1I1	chr7	95709800	+	CXCL11	chr4	76957217	-
In-frame	ENST00000366641	ENST00000359947		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
In-frame	ENST00000366641	ENST00000438120		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
In-frame	ENST00000366641	ENST00000372413		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
In-frame	ENST00000366641	ENST00000372414		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
In-frame	ENST00000366641	ENST00000422171		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
5CDS-3UTR	ENST00000366641	ENST00000496447		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
intron-3CDS	ENST00000476717	ENST00000359947		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
intron-3CDS	ENST00000476717	ENST00000438120		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
intron-3CDS	ENST00000476717	ENST00000372413		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
intron-3CDS	ENST00000476717	ENST00000372414		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
intron-3CDS	ENST00000476717	ENST00000422171		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
intron-3UTR	ENST00000476717	ENST00000496447		TCGA	RV	LUSC	TCGA-43-8115-01A	EGLN1	chr1	231556744	-	PTPRF	chr1	44083116	+
5CDS-5UTR	ENST00000366844	ENST00000541908		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366844	ENST00000398864		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366844	ENST00000266508		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366844	ENST00000360995		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366843	ENST00000541908		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366843	ENST00000398864		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366843	ENST00000266508		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000366843	ENST00000360995		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000284563	ENST00000541908		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000284563	ENST00000398864		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000284563	ENST00000266508		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000284563	ENST00000360995		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000391874	ENST00000541908		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000391874	ENST00000398864		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000391874	ENST00000266508		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000391874	ENST00000360995		TCGA	RV	LUSC	TCGA-39-5029-01A	ENAH	chr1	225840388	-	AEBP2	chr12	19615444	+
In-frame	ENST00000393784	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
5CDS-3UTR	ENST00000393784	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
intron-3CDS	ENST00000519860	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
intron-3UTR	ENST00000519860	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
In-frame	ENST00000523291	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
5CDS-3UTR	ENST00000523291	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
Frame-shit	ENST00000326654	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
5CDS-3UTR	ENST00000326654	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6738-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
In-frame	ENST00000266517	ENST00000229329		TCGA	RV	LUSC	TCGA-77-8143-01A	ETNK1	chr12	22812088	+	CMAS	chr12	22208083	+
intron-3CDS	ENST00000335148	ENST00000229329		TCGA	RV	LUSC	TCGA-77-8143-01A	ETNK1	chr12	22812088	+	CMAS	chr12	22208083	+
Frame-shit	ENST00000378204	ENST00000409003		TCGA	RV	LUSC	TCGA-L3-A524-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119391939	-
Frame-shit	ENST00000378204	ENST00000314727		TCGA	RV	LUSC	TCGA-L3-A524-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119391939	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	LUSC	TCGA-L3-A524-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119391939	-
intron-3CDS	ENST00000515037	ENST00000242108		TCGA	RV	LUSC	TCGA-21-1070-01A	FAM114A1	chr4	38880047	+	EEPD1	chr7	36320724	+
intron-3CDS	ENST00000515037	ENST00000534978		TCGA	RV	LUSC	TCGA-21-1070-01A	FAM114A1	chr4	38880047	+	EEPD1	chr7	36320724	+
In-frame	ENST00000358869	ENST00000242108		TCGA	RV	LUSC	TCGA-21-1070-01A	FAM114A1	chr4	38880047	+	EEPD1	chr7	36320724	+
In-frame	ENST00000358869	ENST00000534978		TCGA	RV	LUSC	TCGA-21-1070-01A	FAM114A1	chr4	38880047	+	EEPD1	chr7	36320724	+
intron-3CDS	ENST00000513966	ENST00000242108		TCGA	RV	LUSC	TCGA-21-1070-01A	FAM114A1	chr4	38880047	+	EEPD1	chr7	36320724	+
intron-3CDS	ENST00000513966	ENST00000534978		TCGA	RV	LUSC	TCGA-21-1070-01A	FAM114A1	chr4	38880047	+	EEPD1	chr7	36320724	+
In-frame	ENST00000375915	ENST00000376131		TCGA	RV	LUSC	TCGA-43-2576-01A	FAM155A	chr13	108518030	-	FGF14	chr13	102379160	-
In-frame	ENST00000375915	ENST00000376143		TCGA	RV	LUSC	TCGA-43-2576-01A	FAM155A	chr13	108518030	-	FGF14	chr13	102379160	-
5CDS-intron	ENST00000375915	ENST00000468052		TCGA	RV	LUSC	TCGA-43-2576-01A	FAM155A	chr13	108518030	-	FGF14	chr13	102379160	-
In-frame	ENST00000441788	ENST00000252456		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000441788	ENST00000592923		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000441788	ENST00000535659		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000441788	ENST00000588468		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000441788	ENST00000544952		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
In-frame	ENST00000313639	ENST00000252456		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000313639	ENST00000592923		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000313639	ENST00000535659		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000313639	ENST00000588468		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000313639	ENST00000544952		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
In-frame	ENST00000395095	ENST00000252456		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000395095	ENST00000592923		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-5UTR	ENST00000395095	ENST00000535659		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000395095	ENST00000588468		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
5CDS-3UTR	ENST00000395095	ENST00000544952		TCGA	RV	LUSC	TCGA-39-5019-01A	FZR1	chr19	3523056	+	CNN1	chr19	11651891	+
In-frame	ENST00000381815	ENST00000328619		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
5CDS-3UTR	ENST00000381815	ENST00000468717		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
In-frame	ENST00000381831	ENST00000328619		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
5CDS-3UTR	ENST00000381831	ENST00000468717		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
Frame-shit	ENST00000381839	ENST00000328619		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
5CDS-3UTR	ENST00000381839	ENST00000468717		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
Frame-shit	ENST00000543717	ENST00000328619		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
5CDS-3UTR	ENST00000543717	ENST00000468717		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
intron-3CDS	ENST00000361093	ENST00000328619		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
intron-3UTR	ENST00000361093	ENST00000468717		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
intron-3CDS	ENST00000497313	ENST00000328619		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
intron-3UTR	ENST00000497313	ENST00000468717		TCGA	RV	LUSC	TCGA-37-4130-01A	GART	chr21	34883559	-	PCP4	chr21	41300909	+
5UTR-3CDS	ENST00000329517	ENST00000400521		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000329517	ENST00000400519		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000329517	ENST00000535882		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000329517	ENST00000334363		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000329517	ENST00000400518		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000329517	ENST00000542719		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-5UTR	ENST00000329517	ENST00000491939		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000403325	ENST00000400521		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000403325	ENST00000400519		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000403325	ENST00000535882		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000403325	ENST00000334363		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000403325	ENST00000400518		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000403325	ENST00000542719		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-5UTR	ENST00000403325	ENST00000491939		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000405009	ENST00000400521		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000405009	ENST00000400519		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000405009	ENST00000535882		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000405009	ENST00000334363		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000405009	ENST00000400518		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000405009	ENST00000542719		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-5UTR	ENST00000405009	ENST00000491939		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000460402	ENST00000400521		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000460402	ENST00000400519		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000460402	ENST00000535882		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000460402	ENST00000334363		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000460402	ENST00000400518		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-3CDS	ENST00000460402	ENST00000542719		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
5UTR-5UTR	ENST00000460402	ENST00000491939		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	GNB1L	chr22	19841966	-	TXNRD2	chr22	19907122	-
Frame-shit	ENST00000396594	ENST00000399799		TCGA	RV	LUSC	TCGA-56-A49D-01A	GNE	chr9	36236829	-	ROCK1	chr18	18650574	-
Frame-shit	ENST00000539815	ENST00000399799		TCGA	RV	LUSC	TCGA-56-A49D-01A	GNE	chr9	36236829	-	ROCK1	chr18	18650574	-
Frame-shit	ENST00000543356	ENST00000399799		TCGA	RV	LUSC	TCGA-56-A49D-01A	GNE	chr9	36236829	-	ROCK1	chr18	18650574	-
intron-3CDS	ENST00000539208	ENST00000399799		TCGA	RV	LUSC	TCGA-56-A49D-01A	GNE	chr9	36236829	-	ROCK1	chr18	18650574	-
In-frame	ENST00000447283	ENST00000399799		TCGA	RV	LUSC	TCGA-56-A49D-01A	GNE	chr9	36236829	-	ROCK1	chr18	18650574	-
In-frame	ENST00000377902	ENST00000399799		TCGA	RV	LUSC	TCGA-56-A49D-01A	GNE	chr9	36236829	-	ROCK1	chr18	18650574	-
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	IL27RA	chr19	14160126	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	IL27RA	chr19	14160126	+	RLN3	chr19	14141522	+
In-frame	ENST00000261023	ENST00000264042		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000261023	ENST00000545004		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000261023	ENST00000373287		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000261023	ENST00000479427		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
In-frame	ENST00000374907	ENST00000264042		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000374907	ENST00000545004		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000374907	ENST00000373287		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000374907	ENST00000479427		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
In-frame	ENST00000433736	ENST00000264042		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000433736	ENST00000545004		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000433736	ENST00000373287		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5CDS-intron	ENST00000433736	ENST00000479427		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
3UTR-3CDS	ENST00000474571	ENST00000264042		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
3UTR-intron	ENST00000474571	ENST00000545004		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
3UTR-intron	ENST00000474571	ENST00000373287		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
3UTR-intron	ENST00000474571	ENST00000479427		TCGA	RV	LUSC	TCGA-43-2578-01A	ITGAV	chr2	187534541	+	FARP2	chr2	242429377	+
5UTR-3CDS	ENST00000379992	ENST00000314888		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
5UTR-3CDS	ENST00000379992	ENST00000540444		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
5UTR-intron	ENST00000379992	ENST00000464379		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
intron-3CDS	ENST00000493941	ENST00000314888		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
intron-3CDS	ENST00000493941	ENST00000540444		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
intron-intron	ENST00000493941	ENST00000464379		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
intron-3CDS	ENST00000308675	ENST00000314888		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
intron-3CDS	ENST00000308675	ENST00000540444		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
intron-intron	ENST00000308675	ENST00000464379		TCGA	RV	LUSC	TCGA-85-A50M-01A	LINGO2	chr9	28475938	-	TLN1	chr9	35708481	-
Frame-shit	ENST00000297293	ENST00000333891		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
Frame-shit	ENST00000297293	ENST00000423517		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
5CDS-intron	ENST00000297293	ENST00000437081		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
5CDS-intron	ENST00000297293	ENST00000426442		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
Frame-shit	ENST00000493372	ENST00000333891		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
Frame-shit	ENST00000493372	ENST00000423517		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
5CDS-intron	ENST00000493372	ENST00000437081		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
5CDS-intron	ENST00000493372	ENST00000426442		TCGA	RV	LUSC	TCGA-92-8063-01A	LMTK2	chr7	97780767	+	PCLO	chr7	82785708	-
5CDS-5UTR	ENST00000579585	ENST00000311172		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000579585	ENST00000409314		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000579585	ENST00000409418		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000579585	ENST00000458644		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000579585	ENST00000409853		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000579585	ENST00000409263		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000584573	ENST00000311172		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000584573	ENST00000409314		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000584573	ENST00000409418		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000584573	ENST00000458644		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000584573	ENST00000409853		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000584573	ENST00000409263		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361733	ENST00000311172		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361733	ENST00000409314		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361733	ENST00000409418		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361733	ENST00000458644		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361733	ENST00000409853		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000361733	ENST00000409263		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361357	ENST00000311172		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361357	ENST00000409314		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361357	ENST00000409418		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361357	ENST00000458644		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000361357	ENST00000409853		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000361357	ENST00000409263		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000577395	ENST00000311172		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000577395	ENST00000409314		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000577395	ENST00000409418		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000577395	ENST00000458644		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000577395	ENST00000409853		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-intron	ENST00000577395	ENST00000409263		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000577784	ENST00000311172		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000577784	ENST00000409314		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000577784	ENST00000409418		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000577784	ENST00000458644		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
intron-5UTR	ENST00000577784	ENST00000409853		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
intron-intron	ENST00000577784	ENST00000409263		TCGA	RV	LUSC	TCGA-O2-A52S-01A	MAP3K3	chr17	61710162	+	FCHSD2	chr11	72726930	-
5CDS-5UTR	ENST00000263268	ENST00000320033		TCGA	RV	LUSC	TCGA-58-A46K-01A	MREG	chr2	216861029	-	ARL4D	chr17	41477029	+
In-frame	ENST00000359786	ENST00000544865		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000359786	ENST00000263073		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000359786	ENST00000354901		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000359786	ENST00000536871		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000359786	ENST00000573166		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000438665	ENST00000544865		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000438665	ENST00000263073		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000438665	ENST00000354901		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000438665	ENST00000536871		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000438665	ENST00000573166		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
Frame-shit	ENST00000575158	ENST00000544865		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
Frame-shit	ENST00000575158	ENST00000263073		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
Frame-shit	ENST00000575158	ENST00000354901		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
Frame-shit	ENST00000575158	ENST00000536871		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000575158	ENST00000573166		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000361007	ENST00000544865		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000361007	ENST00000263073		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000361007	ENST00000354901		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000361007	ENST00000536871		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000361007	ENST00000573166		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000545534	ENST00000544865		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000545534	ENST00000263073		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000545534	ENST00000354901		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
In-frame	ENST00000545534	ENST00000536871		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
5CDS-5UTR	ENST00000545534	ENST00000573166		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000573198	ENST00000544865		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000573198	ENST00000263073		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000573198	ENST00000354901		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
intron-3CDS	ENST00000573198	ENST00000536871		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
intron-5UTR	ENST00000573198	ENST00000573166		TCGA	RV	LUSC	TCGA-94-8491-01A	MYO1C	chr17	1377904	-	SMG6	chr17	1989195	-
Frame-shit	ENST00000319023	ENST00000338832		TCGA	RV	LUSC	TCGA-18-4086-01A	NADSYN1	chr11	71192450	+	C11orf34	chr11	112123132	-
Frame-shit	ENST00000539574	ENST00000338832		TCGA	RV	LUSC	TCGA-18-4086-01A	NADSYN1	chr11	71192450	+	C11orf34	chr11	112123132	-
5UTR-3CDS	ENST00000530055	ENST00000338832		TCGA	RV	LUSC	TCGA-18-4086-01A	NADSYN1	chr11	71192450	+	C11orf34	chr11	112123132	-
3UTR-3CDS	ENST00000526039	ENST00000338832		TCGA	RV	LUSC	TCGA-18-4086-01A	NADSYN1	chr11	71192450	+	C11orf34	chr11	112123132	-
Frame-shit	ENST00000475381	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000475381	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000475381	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000475381	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000475381	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000475381	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000475381	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000273512	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000273512	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000273512	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000273512	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000273512	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000273512	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000273512	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000538775	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000538775	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000538775	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000538775	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000538775	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000538775	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5CDS-intron	ENST00000538775	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-3CDS	ENST00000543711	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-3CDS	ENST00000543711	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-3CDS	ENST00000543711	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-intron	ENST00000543711	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-intron	ENST00000543711	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-intron	ENST00000543711	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
5UTR-intron	ENST00000543711	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	NCEH1	chr3	172428637	-	FNDC3B	chr3	171944661	+
Frame-shit	ENST00000379540	ENST00000379471		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
5CDS-5UTR	ENST00000379540	ENST00000464829		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
5CDS-intron	ENST00000379540	ENST00000455041		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
Frame-shit	ENST00000379521	ENST00000379471		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
5CDS-5UTR	ENST00000379521	ENST00000464829		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
5CDS-intron	ENST00000379521	ENST00000455041		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
Frame-shit	ENST00000318524	ENST00000379471		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
5CDS-5UTR	ENST00000318524	ENST00000464829		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
5CDS-intron	ENST00000318524	ENST00000455041		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
intron-3CDS	ENST00000463421	ENST00000379471		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
intron-5UTR	ENST00000463421	ENST00000464829		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
intron-intron	ENST00000463421	ENST00000455041		TCGA	RV	LUSC	TCGA-77-A5GA-01A	NFX1	chr9	33332500	+	NOL6	chr9	33470189	-
Frame-shit	ENST00000331134	ENST00000331056		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000331134	ENST00000573076		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000331134	ENST00000574777		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000331134	ENST00000571224		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000331134	ENST00000571004		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000374747	ENST00000331056		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000374747	ENST00000573076		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000374747	ENST00000574777		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000374747	ENST00000571224		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000374747	ENST00000571004		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000539314	ENST00000331056		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000539314	ENST00000573076		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000539314	ENST00000574777		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000539314	ENST00000571224		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
5CDS-5UTR	ENST00000539314	ENST00000571004		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000572760	ENST00000331056		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000572760	ENST00000573076		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000572760	ENST00000574777		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000572760	ENST00000571224		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000572760	ENST00000571004		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000573876	ENST00000331056		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000573876	ENST00000573076		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000573876	ENST00000574777		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000573876	ENST00000571224		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000573876	ENST00000571004		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000574344	ENST00000331056		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-3CDS	ENST00000574344	ENST00000573076		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000574344	ENST00000574777		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000574344	ENST00000571224		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
intron-5UTR	ENST00000574344	ENST00000571004		TCGA	RV	LUSC	TCGA-85-A4CN-01A	NPLOC4	chr17	79567367	-	PDE6G	chr17	79618715	-
Frame-shit	ENST00000446845	ENST00000417037		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
Frame-shit	ENST00000446845	ENST00000396334		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
Frame-shit	ENST00000446845	ENST00000424893		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
In-frame	ENST00000446845	ENST00000495303		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
In-frame	ENST00000446845	ENST00000443433		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
5CDS-3UTR	ENST00000446845	ENST00000481122		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
Frame-shit	ENST00000311806	ENST00000417037		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
Frame-shit	ENST00000311806	ENST00000396334		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
Frame-shit	ENST00000311806	ENST00000424893		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
In-frame	ENST00000311806	ENST00000495303		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
In-frame	ENST00000311806	ENST00000443433		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
5CDS-3UTR	ENST00000311806	ENST00000481122		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
intron-3CDS	ENST00000492714	ENST00000417037		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
intron-3CDS	ENST00000492714	ENST00000396334		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
intron-3CDS	ENST00000492714	ENST00000424893		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
intron-3CDS	ENST00000492714	ENST00000495303		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
intron-3CDS	ENST00000492714	ENST00000443433		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
intron-3UTR	ENST00000492714	ENST00000481122		TCGA	RV	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38182248	+
5UTR-3CDS	ENST00000393958	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000393958	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3UTR	ENST00000393958	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000393958	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000393958	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000393960	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000393960	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3UTR	ENST00000393960	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000393960	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000393960	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000355677	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000355677	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3UTR	ENST00000355677	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000355677	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000355677	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000524491	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3CDS	ENST00000524491	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-3UTR	ENST00000524491	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000524491	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5UTR-5UTR	ENST00000524491	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3CDS	ENST00000529047	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3CDS	ENST00000529047	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3UTR	ENST00000529047	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-5UTR	ENST00000529047	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-5UTR	ENST00000529047	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3CDS	ENST00000393955	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3CDS	ENST00000393955	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3UTR	ENST00000393955	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-5UTR	ENST00000393955	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-5UTR	ENST00000393955	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3CDS	ENST00000528224	ENST00000398645		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3CDS	ENST00000528224	ENST00000529006		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-3UTR	ENST00000528224	ENST00000526258		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-5UTR	ENST00000528224	ENST00000308783		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
intron-5UTR	ENST00000528224	ENST00000530342		TCGA	RV	LUSC	TCGA-85-8584-01A	PC	chr11	66719901	-	KDM2A	chr11	67012660	+
5CDS-5UTR	ENST00000579146	ENST00000309156		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579146	ENST00000309185		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579146	ENST00000394211		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000579146	ENST00000578702		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000579146	ENST00000445327		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579146	ENST00000394209		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579146	ENST00000394204		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300658	ENST00000309156		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300658	ENST00000309185		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300658	ENST00000394211		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000300658	ENST00000578702		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000300658	ENST00000445327		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300658	ENST00000394209		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300658	ENST00000394204		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000378011	ENST00000309156		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000378011	ENST00000309185		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000378011	ENST00000394211		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000378011	ENST00000578702		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000378011	ENST00000445327		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000378011	ENST00000394209		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000378011	ENST00000394204		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000429199	ENST00000309156		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000429199	ENST00000309185		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000429199	ENST00000394211		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000429199	ENST00000578702		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000429199	ENST00000445327		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000429199	ENST00000394209		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000429199	ENST00000394204		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PGAP3	chr17	37844087	-	GRB7	chr17	37898505	+
5CDS-intron	ENST00000400316	ENST00000477723		TCGA	RV	LUSC	TCGA-21-1083-01A	PHLPP1	chr18	60587347	+	WDR12	chr2	203759349	-
5CDS-intron	ENST00000400316	ENST00000261015		TCGA	RV	LUSC	TCGA-21-1083-01A	PHLPP1	chr18	60587347	+	WDR12	chr2	203759349	-
5CDS-intron	ENST00000262719	ENST00000477723		TCGA	RV	LUSC	TCGA-21-1083-01A	PHLPP1	chr18	60587347	+	WDR12	chr2	203759349	-
5CDS-intron	ENST00000262719	ENST00000261015		TCGA	RV	LUSC	TCGA-21-1083-01A	PHLPP1	chr18	60587347	+	WDR12	chr2	203759349	-
intron-intron	ENST00000588953	ENST00000477723		TCGA	RV	LUSC	TCGA-21-1083-01A	PHLPP1	chr18	60587347	+	WDR12	chr2	203759349	-
intron-intron	ENST00000588953	ENST00000261015		TCGA	RV	LUSC	TCGA-21-1083-01A	PHLPP1	chr18	60587347	+	WDR12	chr2	203759349	-
5CDS-5UTR	ENST00000262039	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000262039	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000262039	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000262039	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000262039	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000398870	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000398870	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000398870	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000398870	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000398870	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000586545	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000586545	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000586545	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000586545	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000586545	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000590220	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000590220	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000590220	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000590220	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000590220	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000593098	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000593098	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000593098	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000593098	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000593098	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000589056	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000589056	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000589056	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000589056	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000589056	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587402	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587402	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587402	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587402	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587402	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000588156	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000588156	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000588156	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000588156	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000588156	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587328	ENST00000526713		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587328	ENST00000344327		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587328	ENST00000532133		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587328	ENST00000360497		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000587328	ENST00000348423		TCGA	RV	LUSC	TCGA-37-4135-01A	PIK3C3	chr18	39573305	+	TRPC6	chr11	101375529	-
In-frame	ENST00000260970	ENST00000303116		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
In-frame	ENST00000260970	ENST00000392238		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
In-frame	ENST00000409714	ENST00000303116		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
In-frame	ENST00000409714	ENST00000392238		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
Frame-shit	ENST00000462903	ENST00000303116		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
Frame-shit	ENST00000462903	ENST00000392238		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
In-frame	ENST00000448752	ENST00000303116		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
In-frame	ENST00000448752	ENST00000392238		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
3UTR-3CDS	ENST00000482772	ENST00000303116		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
3UTR-3CDS	ENST00000482772	ENST00000392238		TCGA	RV	LUSC	TCGA-85-A4JB-01A	PPIG	chr2	170489757	+	FAM117B	chr2	203589640	+
Frame-shit	ENST00000261207	ENST00000300145		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000261207	ENST00000546709		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
In-frame	ENST00000450142	ENST00000300145		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000450142	ENST00000546709		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000437004	ENST00000300145		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000437004	ENST00000546709		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000546369	ENST00000300145		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000546369	ENST00000546709		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
In-frame	ENST00000550107	ENST00000300145		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000550107	ENST00000546709		TCGA	RV	LUSC	TCGA-43-8115-01A	PPP1R12A	chr12	80239082	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000608999	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000608999	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000336894	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000480184	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-intron	ENST00000356764	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000290419	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000391959	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000343846		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000366878		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000484758		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000494793		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000478605		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000454695		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000344029		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
intron-intron	ENST00000367270	ENST00000366877		TCGA	RV	LUSC	TCGA-39-5040-01A	PPP1R12B	chr1	202318270	+	SUSD4	chr1	223408442	-
5CDS-5UTR	ENST00000337537	ENST00000329153		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000337537	ENST00000417684		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000337537	ENST00000559832		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-5UTR	ENST00000555899	ENST00000329153		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000555899	ENST00000417684		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000555899	ENST00000559832		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-5UTR	ENST00000422769	ENST00000329153		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000422769	ENST00000417684		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000422769	ENST00000559832		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
intron-5UTR	ENST00000553266	ENST00000329153		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
intron-intron	ENST00000553266	ENST00000417684		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
intron-intron	ENST00000553266	ENST00000559832		TCGA	RV	LUSC	TCGA-22-4593-01A	PPP2R5E	chr14	63920407	-	PLEKHH1	chr14	68008551	+
5UTR-3CDS	ENST00000522684	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000522684	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000535192	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000535192	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519465	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519465	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517887	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517887	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000521059	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000521059	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000395218	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000395218	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000538769	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000538769	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000340930	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000340930	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519419	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519419	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000430260	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000430260	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000519881	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000519881	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000520892	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000520892	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519635	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519635	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517712	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517712	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000522950	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000522950	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000520151	ENST00000355621		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000520151	ENST00000473814		TCGA	RV	LUSC	TCGA-46-3767-01A	PTK2	chr8	142011224	-	UBE2H	chr7	129479175	-
In-frame	ENST00000535977	ENST00000396324		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000535977	ENST00000452625		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000535977	ENST00000576790		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000535977	ENST00000300036		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
5CDS-intron	ENST00000535977	ENST00000573908		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000539661	ENST00000396324		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000539661	ENST00000452625		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000539661	ENST00000576790		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000539661	ENST00000300036		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
5CDS-intron	ENST00000539661	ENST00000573908		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000538492	ENST00000396324		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000538492	ENST00000452625		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000538492	ENST00000576790		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000538492	ENST00000300036		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
5CDS-intron	ENST00000538492	ENST00000573908		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000248139	ENST00000396324		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000248139	ENST00000452625		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000248139	ENST00000576790		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
In-frame	ENST00000248139	ENST00000300036		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
5CDS-intron	ENST00000248139	ENST00000573908		TCGA	RV	LUSC	TCGA-77-8009-01A	RAB40C	chr16	668260	+	MYH11	chr16	15917268	-
Frame-shit	ENST00000408982	ENST00000581006		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000408982	ENST00000498772		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000408982	ENST00000225609		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000408982	ENST00000395844		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000408982	ENST00000463810		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262477	ENST00000581006		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262477	ENST00000498772		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262477	ENST00000225609		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000262477	ENST00000395844		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000262477	ENST00000463810		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000537505	ENST00000581006		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000537505	ENST00000498772		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000537505	ENST00000225609		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000537505	ENST00000395844		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000537505	ENST00000463810		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000546142	ENST00000581006		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000546142	ENST00000498772		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000546142	ENST00000225609		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000546142	ENST00000395844		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000546142	ENST00000463810		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000341923	ENST00000581006		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000341923	ENST00000498772		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000341923	ENST00000225609		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
Frame-shit	ENST00000341923	ENST00000395844		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000341923	ENST00000463810		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
intron-3CDS	ENST00000570487	ENST00000581006		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
intron-3CDS	ENST00000570487	ENST00000498772		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
intron-3CDS	ENST00000570487	ENST00000225609		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
intron-3CDS	ENST00000570487	ENST00000395844		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
intron-intron	ENST00000570487	ENST00000463810		TCGA	RV	LUSC	TCGA-60-2724-01A	RABEP1	chr17	5257785	+	PIGL	chr17	16203202	+
5CDS-intron	ENST00000343529	ENST00000445907		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000343529	ENST00000320658		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000343529	ENST00000453373		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000343529	ENST00000397608		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000343529	ENST00000402486		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-5UTR	ENST00000343529	ENST00000401861		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000343529	ENST00000480591		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000428762	ENST00000445907		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000428762	ENST00000320658		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000428762	ENST00000453373		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000428762	ENST00000397608		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000428762	ENST00000402486		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-5UTR	ENST00000428762	ENST00000401861		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000428762	ENST00000480591		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000424685	ENST00000445907		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000424685	ENST00000320658		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000424685	ENST00000453373		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000424685	ENST00000397608		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000424685	ENST00000402486		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-5UTR	ENST00000424685	ENST00000401861		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
5CDS-intron	ENST00000424685	ENST00000480591		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-intron	ENST00000473945	ENST00000445907		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-intron	ENST00000473945	ENST00000320658		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-intron	ENST00000473945	ENST00000453373		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-intron	ENST00000473945	ENST00000397608		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-intron	ENST00000473945	ENST00000402486		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-5UTR	ENST00000473945	ENST00000401861		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
intron-intron	ENST00000473945	ENST00000480591		TCGA	RV	LUSC	TCGA-68-8250-01A	RELN	chr7	103191514	-	CHRM2	chr7	136635750	+
Frame-shit	ENST00000262544	ENST00000427836		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000262544	ENST00000389247		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000262544	ENST00000457206		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
Frame-shit	ENST00000336714	ENST00000427836		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000336714	ENST00000389247		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000336714	ENST00000457206		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
Frame-shit	ENST00000377475	ENST00000427836		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000377475	ENST00000389247		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000377475	ENST00000457206		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
Frame-shit	ENST00000377465	ENST00000427836		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000377465	ENST00000389247		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000377465	ENST00000457206		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
intron-3CDS	ENST00000494645	ENST00000427836		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000494645	ENST00000389247		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000494645	ENST00000457206		TCGA	RV	LUSC	TCGA-46-6025-01A	SEC23B	chr20	18516386	+	PLEKHM3	chr2	208693220	-
intron-3CDS	ENST00000394817	ENST00000357450		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
intron-3CDS	ENST00000394817	ENST00000404354		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
5UTR-3CDS	ENST00000265195	ENST00000357450		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
5UTR-3CDS	ENST00000265195	ENST00000404354		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
5UTR-3CDS	ENST00000509534	ENST00000357450		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
5UTR-3CDS	ENST00000509534	ENST00000404354		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
intron-3CDS	ENST00000515008	ENST00000357450		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
intron-3CDS	ENST00000515008	ENST00000404354		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	SIL1	chr5	138532130	-	SMC1B	chr22	45779493	-
In-frame	ENST00000609923	ENST00000266544		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5CDS-intron	ENST00000609923	ENST00000542369		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5CDS-intron	ENST00000609923	ENST00000540688		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
Frame-shit	ENST00000539557	ENST00000266544		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5CDS-intron	ENST00000539557	ENST00000542369		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5CDS-intron	ENST00000539557	ENST00000540688		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5UTR-3CDS	ENST00000265870	ENST00000266544		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5UTR-intron	ENST00000265870	ENST00000542369		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
5UTR-intron	ENST00000265870	ENST00000540688		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	SLC25A16	chr10	70246901	-	NDUFA9	chr12	4791371	+
In-frame	ENST00000325411	ENST00000257261		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000325411	ENST00000522056		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000325411	ENST00000278840		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000325411	ENST00000521849		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5CDS-intron	ENST00000325411	ENST00000574708		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5CDS-intron	ENST00000325411	ENST00000522639		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5CDS-intron	ENST00000325411	ENST00000517839		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000463318	ENST00000257261		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000463318	ENST00000522056		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000463318	ENST00000278840		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-3CDS	ENST00000463318	ENST00000521849		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-intron	ENST00000463318	ENST00000574708		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-intron	ENST00000463318	ENST00000522639		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5UTR-intron	ENST00000463318	ENST00000517839		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000350657	ENST00000257261		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000350657	ENST00000522056		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000350657	ENST00000278840		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
In-frame	ENST00000350657	ENST00000521849		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5CDS-intron	ENST00000350657	ENST00000574708		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5CDS-intron	ENST00000350657	ENST00000522639		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
5CDS-intron	ENST00000350657	ENST00000517839		TCGA	RV	LUSC	TCGA-21-1071-01A	SLC47A2	chr17	19605918	-	FADS2	chr11	61624483	+
3UTR-5UTR	ENST00000491455	ENST00000355360		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
3UTR-5UTR	ENST00000491455	ENST00000329291		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
3UTR-5UTR	ENST00000491455	ENST00000539153		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
3UTR-3UTR	ENST00000491455	ENST00000462488		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000415093	ENST00000355360		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000415093	ENST00000329291		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000415093	ENST00000539153		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-3UTR	ENST00000415093	ENST00000462488		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000366957	ENST00000355360		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000366957	ENST00000329291		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-5UTR	ENST00000366957	ENST00000539153		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
5CDS-3UTR	ENST00000366957	ENST00000462488		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	SMYD2	chr1	214454770	+	PGBD2	chr1	249208015	+
intron-3CDS	ENST00000520643	ENST00000419617		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-3CDS	ENST00000520643	ENST00000523601		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-intron	ENST00000520643	ENST00000521768		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
In-frame	ENST00000251809	ENST00000419617		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
In-frame	ENST00000251809	ENST00000523601		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
5CDS-intron	ENST00000251809	ENST00000521768		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-3CDS	ENST00000520508	ENST00000419617		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-3CDS	ENST00000520508	ENST00000523601		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-intron	ENST00000520508	ENST00000521768		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
In-frame	ENST00000388798	ENST00000419617		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
In-frame	ENST00000388798	ENST00000523601		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
5CDS-intron	ENST00000388798	ENST00000521768		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-3CDS	ENST00000523302	ENST00000419617		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-3CDS	ENST00000523302	ENST00000523601		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
intron-intron	ENST00000523302	ENST00000521768		TCGA	RV	LUSC	TCGA-68-8250-01A	SPAG1	chr8	101245765	+	STK3	chr8	99719539	-
In-frame	ENST00000295213	ENST00000381295		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
In-frame	ENST00000295213	ENST00000346134		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
In-frame	ENST00000295213	ENST00000349598		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
In-frame	ENST00000419395	ENST00000381295		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
In-frame	ENST00000419395	ENST00000346134		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
In-frame	ENST00000419395	ENST00000349598		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
3UTR-3CDS	ENST00000506829	ENST00000381295		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
3UTR-3CDS	ENST00000506829	ENST00000346134		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
3UTR-3CDS	ENST00000506829	ENST00000349598		TCGA	RV	LUSC	TCGA-22-4591-01A	SPATA18	chr4	52917957	+	EXOC1	chr4	56768510	+
intron-3CDS	ENST00000289805	ENST00000389301		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
intron-3CDS	ENST00000289805	ENST00000568369		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
intron-intron	ENST00000289805	ENST00000567284		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
intron-intron	ENST00000289805	ENST00000389302		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
intron-intron	ENST00000289805	ENST00000563673		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
intron-intron	ENST00000289805	ENST00000534992		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
intron-intron	ENST00000289805	ENST00000543736		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
Frame-shit	ENST00000335360	ENST00000389301		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
Frame-shit	ENST00000335360	ENST00000568369		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
5CDS-intron	ENST00000335360	ENST00000567284		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
5CDS-intron	ENST00000335360	ENST00000389302		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
5CDS-intron	ENST00000335360	ENST00000563673		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
5CDS-intron	ENST00000335360	ENST00000534992		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
5CDS-intron	ENST00000335360	ENST00000543736		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	SPATA2L	chr16	89764603	-	FANCA	chr16	89811479	-
In-frame	ENST00000328299	ENST00000354567		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
In-frame	ENST00000328299	ENST00000344720		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000328299	ENST00000317704		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
5CDS-intron	ENST00000328299	ENST00000478255		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
intron-3CDS	ENST00000464140	ENST00000354567		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
intron-3CDS	ENST00000464140	ENST00000344720		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
intron-intron	ENST00000464140	ENST00000317704		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
intron-intron	ENST00000464140	ENST00000478255		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ST6GALNAC3	chr1	76540569	+	AK5	chr1	77949002	+
In-frame	ENST00000373943	ENST00000319394		TCGA	RV	LUSC	TCGA-85-8287-01A	STX12	chr1	28146243	+	WDTC1	chr1	27608730	+
In-frame	ENST00000373943	ENST00000361771		TCGA	RV	LUSC	TCGA-85-8287-01A	STX12	chr1	28146243	+	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000468761	ENST00000319394		TCGA	RV	LUSC	TCGA-85-8287-01A	STX12	chr1	28146243	+	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000468761	ENST00000361771		TCGA	RV	LUSC	TCGA-85-8287-01A	STX12	chr1	28146243	+	WDTC1	chr1	27608730	+
5CDS-5UTR	ENST00000258301	ENST00000367674		TCGA	RV	LUSC	TCGA-34-A5IX-01A	STX6	chr1	180971742	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000258301	ENST00000263525		TCGA	RV	LUSC	TCGA-34-A5IX-01A	STX6	chr1	180971742	-	TNR	chr1	175375913	-
intron-5UTR	ENST00000469135	ENST00000367674		TCGA	RV	LUSC	TCGA-34-A5IX-01A	STX6	chr1	180971742	-	TNR	chr1	175375913	-
intron-5UTR	ENST00000469135	ENST00000263525		TCGA	RV	LUSC	TCGA-34-A5IX-01A	STX6	chr1	180971742	-	TNR	chr1	175375913	-
intron-5UTR	ENST00000542060	ENST00000367674		TCGA	RV	LUSC	TCGA-34-A5IX-01A	STX6	chr1	180971742	-	TNR	chr1	175375913	-
intron-5UTR	ENST00000542060	ENST00000263525		TCGA	RV	LUSC	TCGA-34-A5IX-01A	STX6	chr1	180971742	-	TNR	chr1	175375913	-
intron-3CDS	ENST00000230323	ENST00000373050		TCGA	RV	LUSC	TCGA-56-A5DR-01A	TFEB	chr6	41703088	-	MDFI	chr6	41617357	+
intron-3CDS	ENST00000358871	ENST00000373050		TCGA	RV	LUSC	TCGA-56-A5DR-01A	TFEB	chr6	41703088	-	MDFI	chr6	41617357	+
intron-3CDS	ENST00000420312	ENST00000373050		TCGA	RV	LUSC	TCGA-56-A5DR-01A	TFEB	chr6	41703088	-	MDFI	chr6	41617357	+
intron-3CDS	ENST00000403298	ENST00000373050		TCGA	RV	LUSC	TCGA-56-A5DR-01A	TFEB	chr6	41703088	-	MDFI	chr6	41617357	+
5UTR-3CDS	ENST00000373033	ENST00000373050		TCGA	RV	LUSC	TCGA-56-A5DR-01A	TFEB	chr6	41703088	-	MDFI	chr6	41617357	+
intron-3CDS	ENST00000394283	ENST00000373050		TCGA	RV	LUSC	TCGA-56-A5DR-01A	TFEB	chr6	41703088	-	MDFI	chr6	41617357	+
In-frame	ENST00000394642	ENST00000434000		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
In-frame	ENST00000394642	ENST00000591680		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000394642	ENST00000586265		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000394642	ENST00000592154		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000394642	ENST00000588554		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
In-frame	ENST00000579849	ENST00000434000		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
In-frame	ENST00000579849	ENST00000591680		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000579849	ENST00000586265		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000579849	ENST00000592154		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000579849	ENST00000588554		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
In-frame	ENST00000578289	ENST00000434000		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
In-frame	ENST00000578289	ENST00000591680		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000578289	ENST00000586265		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000578289	ENST00000592154		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000578289	ENST00000588554		TCGA	RV	LUSC	TCGA-66-2800-01A	TMEM98	chr17	31261342	+	GPATCH8	chr17	42483419	-
5UTR-5UTR	ENST00000283943	ENST00000320389		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000283943	ENST00000498729		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000389045	ENST00000320389		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000389045	ENST00000498729		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000389044	ENST00000320389		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000389044	ENST00000498729		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000543084	ENST00000320389		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000543084	ENST00000498729		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000409677	ENST00000320389		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
5UTR-5UTR	ENST00000409677	ENST00000498729		TCGA	RV	LUSC	TCGA-46-6026-01A	TRIP12	chr2	230786596	-	KIF1A	chr2	241737229	-
Frame-shit	ENST00000267890	ENST00000290650		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-3UTR	ENST00000267890	ENST00000382177		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-intron	ENST00000267890	ENST00000568782		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
Frame-shit	ENST00000567840	ENST00000290650		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-3UTR	ENST00000567840	ENST00000382177		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-intron	ENST00000567840	ENST00000568782		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
Frame-shit	ENST00000567274	ENST00000290650		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-3UTR	ENST00000567274	ENST00000382177		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-intron	ENST00000567274	ENST00000568782		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
intron-3CDS	ENST00000567485	ENST00000290650		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
intron-3UTR	ENST00000567485	ENST00000382177		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
intron-intron	ENST00000567485	ENST00000568782		TCGA	RV	LUSC	TCGA-56-7822-01A	TTBK2	chr15	43075617	-	UBR1	chr15	43309379	-
5CDS-5UTR	ENST00000192788	ENST00000319481		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000192788	ENST00000399443		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000192788	ENST00000357041		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000192788	ENST00000399441		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000192788	ENST00000582618		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000452449	ENST00000319481		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000452449	ENST00000399443		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000452449	ENST00000357041		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000452449	ENST00000399441		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000452449	ENST00000582618		TCGA	RV	LUSC	TCGA-56-5898-01A	UHRF1BP1	chr6	34760071	+	OSBPL1A	chr18	21957499	-
intron-3CDS	ENST00000555220	ENST00000433971		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000555220	ENST00000345063		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-intron	ENST00000555220	ENST00000488841		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000555424	ENST00000433971		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000555424	ENST00000345063		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-intron	ENST00000555424	ENST00000488841		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
5UTR-3CDS	ENST00000608382	ENST00000433971		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
5UTR-3CDS	ENST00000608382	ENST00000345063		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
5UTR-intron	ENST00000608382	ENST00000488841		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000394715	ENST00000433971		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-3CDS	ENST00000394715	ENST00000345063		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
intron-intron	ENST00000394715	ENST00000488841		TCGA	RV	LUSC	TCGA-L3-A524-01A	ZBTB25	chr14	64970379	-	TPRG1	chr3	188956522	+
Frame-shit	ENST00000376542	ENST00000354989		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000376542	ENST00000360031		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000376542	ENST00000376652		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000376542	ENST00000433259		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
5CDS-3UTR	ENST00000376542	ENST00000485936		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000339157	ENST00000354989		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000339157	ENST00000360031		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000339157	ENST00000376652		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
Frame-shit	ENST00000339157	ENST00000433259		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
5CDS-3UTR	ENST00000339157	ENST00000485936		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
intron-3CDS	ENST00000481556	ENST00000354989		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
intron-3CDS	ENST00000481556	ENST00000360031		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
intron-3CDS	ENST00000481556	ENST00000376652		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
intron-3CDS	ENST00000481556	ENST00000433259		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
intron-3UTR	ENST00000481556	ENST00000485936		TCGA	RV	LUSC	TCGA-85-7696-01A	ABHD12	chr20	25371149	-	ENTPD6	chr20	25203474	+
intron-3CDS	ENST00000463381	ENST00000343529		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000463381	ENST00000428762		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000463381	ENST00000424685		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-intron	ENST00000463381	ENST00000473945		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000473312	ENST00000343529		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000473312	ENST00000428762		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000473312	ENST00000424685		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
5CDS-intron	ENST00000473312	ENST00000473945		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000479901	ENST00000343529		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000479901	ENST00000428762		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000479901	ENST00000424685		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
5CDS-intron	ENST00000479901	ENST00000473945		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000397238	ENST00000343529		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000397238	ENST00000428762		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
Frame-shit	ENST00000397238	ENST00000424685		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
5CDS-intron	ENST00000397238	ENST00000473945		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000476375	ENST00000343529		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000476375	ENST00000428762		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000476375	ENST00000424685		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-intron	ENST00000476375	ENST00000473945		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000335367	ENST00000343529		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000335367	ENST00000428762		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000335367	ENST00000424685		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-intron	ENST00000335367	ENST00000473945		TCGA	RV	LUSC	TCGA-68-8250-01A	AGAP3	chr7	150784159	+	RELN	chr7	103191743	-
intron-3CDS	ENST00000534328	ENST00000318562		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000534328	ENST00000533256		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000534328	ENST00000530636		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000534328	ENST00000526198		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000534328	ENST00000534449		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000332231	ENST00000318562		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000332231	ENST00000533256		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000332231	ENST00000530636		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000332231	ENST00000526198		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000332231	ENST00000534449		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000448903	ENST00000318562		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000448903	ENST00000533256		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000448903	ENST00000530636		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
In-frame	ENST00000448903	ENST00000526198		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000448903	ENST00000534449		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525891	ENST00000318562		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525891	ENST00000533256		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525891	ENST00000530636		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000525891	ENST00000526198		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-intron	ENST00000525891	ENST00000534449		TCGA	RV	LUSC	TCGA-21-1071-01A	AP2A2	chr11	994245	+	EPS8L2	chr11	720062	+
intron-3CDS	ENST00000513032	ENST00000303538		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ARAP2	chr4	36093503	-	PDS5A	chr4	39871082	-
intron-intron	ENST00000513032	ENST00000503396		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ARAP2	chr4	36093503	-	PDS5A	chr4	39871082	-
Frame-shit	ENST00000303965	ENST00000303538		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ARAP2	chr4	36093503	-	PDS5A	chr4	39871082	-
5CDS-intron	ENST00000303965	ENST00000503396		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ARAP2	chr4	36093503	-	PDS5A	chr4	39871082	-
5CDS-5UTR	ENST00000368194	ENST00000368765		TCGA	RV	LUSC	TCGA-43-2576-01A	ARHGEF11	chr1	157014091	-	SMCP	chr1	152856879	+
intron-5UTR	ENST00000487682	ENST00000368765		TCGA	RV	LUSC	TCGA-43-2576-01A	ARHGEF11	chr1	157014091	-	SMCP	chr1	152856879	+
5CDS-5UTR	ENST00000361409	ENST00000368765		TCGA	RV	LUSC	TCGA-43-2576-01A	ARHGEF11	chr1	157014091	-	SMCP	chr1	152856879	+
intron-5UTR	ENST00000315174	ENST00000368765		TCGA	RV	LUSC	TCGA-43-2576-01A	ARHGEF11	chr1	157014091	-	SMCP	chr1	152856879	+
Frame-shit	ENST00000435504	ENST00000371996		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5CDS-intron	ENST00000435504	ENST00000371994		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5CDS-intron	ENST00000435504	ENST00000536010		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5CDS-intron	ENST00000435504	ENST00000472891		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
In-frame	ENST00000336112	ENST00000371996		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5CDS-intron	ENST00000336112	ENST00000371994		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5CDS-intron	ENST00000336112	ENST00000536010		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5CDS-intron	ENST00000336112	ENST00000472891		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5UTR-3CDS	ENST00000272341	ENST00000371996		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5UTR-intron	ENST00000272341	ENST00000371994		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5UTR-intron	ENST00000272341	ENST00000536010		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
5UTR-intron	ENST00000272341	ENST00000472891		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-3CDS	ENST00000404843	ENST00000371996		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-intron	ENST00000404843	ENST00000371994		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-intron	ENST00000404843	ENST00000536010		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-intron	ENST00000404843	ENST00000472891		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-3CDS	ENST00000497092	ENST00000371996		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-intron	ENST00000497092	ENST00000371994		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-intron	ENST00000497092	ENST00000536010		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
intron-intron	ENST00000497092	ENST00000472891		TCGA	RV	LUSC	TCGA-90-7769-01A	ASXL2	chr2	26068350	-	MINPP1	chr10	89272881	+
In-frame	ENST00000262919	ENST00000371627		TCGA	RV	LUSC	TCGA-56-8503-01A	ATRN	chr20	3565527	+	TNKS2	chr10	93572740	+
In-frame	ENST00000446916	ENST00000371627		TCGA	RV	LUSC	TCGA-56-8503-01A	ATRN	chr20	3565527	+	TNKS2	chr10	93572740	+
5CDS-5UTR	ENST00000305877	ENST00000248996		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
5CDS-3UTR	ENST00000305877	ENST00000492538		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
5CDS-5UTR	ENST00000359540	ENST00000248996		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
5CDS-3UTR	ENST00000359540	ENST00000492538		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
5CDS-5UTR	ENST00000398512	ENST00000248996		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
5CDS-3UTR	ENST00000398512	ENST00000492538		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
intron-5UTR	ENST00000436990	ENST00000248996		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
intron-3UTR	ENST00000436990	ENST00000492538		TCGA	RV	LUSC	TCGA-77-7142-01A	BCR	chr22	23524426	+	GNAZ	chr22	23437434	+
Frame-shit	ENST00000380525	ENST00000263650		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000380525	ENST00000389989		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000380525	ENST00000525498		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000380525	ENST00000542243		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000380525	ENST00000348039		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-5UTR	ENST00000380525	ENST00000478260		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-intron	ENST00000380525	ENST00000528124		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000397111	ENST00000263650		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000397111	ENST00000389989		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000397111	ENST00000525498		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000397111	ENST00000542243		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000397111	ENST00000348039		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-5UTR	ENST00000397111	ENST00000478260		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-intron	ENST00000397111	ENST00000528124		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000278224	ENST00000263650		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000278224	ENST00000389989		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000278224	ENST00000525498		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000278224	ENST00000542243		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
Frame-shit	ENST00000278224	ENST00000348039		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-5UTR	ENST00000278224	ENST00000478260		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-intron	ENST00000278224	ENST00000528124		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-3CDS	ENST00000470221	ENST00000263650		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-3CDS	ENST00000470221	ENST00000389989		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-3CDS	ENST00000470221	ENST00000525498		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-3CDS	ENST00000470221	ENST00000542243		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-3CDS	ENST00000470221	ENST00000348039		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-5UTR	ENST00000470221	ENST00000478260		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
intron-intron	ENST00000470221	ENST00000528124		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000401769	ENST00000263650		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000401769	ENST00000389989		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000401769	ENST00000525498		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000401769	ENST00000542243		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000401769	ENST00000348039		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-5UTR	ENST00000401769	ENST00000478260		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-intron	ENST00000401769	ENST00000528124		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000397114	ENST00000263650		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000397114	ENST00000389989		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000397114	ENST00000525498		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000397114	ENST00000542243		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
In-frame	ENST00000397114	ENST00000348039		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-5UTR	ENST00000397114	ENST00000478260		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-intron	ENST00000397114	ENST00000528124		TCGA	RV	LUSC	TCGA-43-2578-01A	CARS	chr11	3059280	-	OSBPL5	chr11	3115564	-
5CDS-5UTR	ENST00000299300	ENST00000299293		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000299300	ENST00000549921		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000299300	ENST00000550389		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000299300	ENST00000397997		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000544368	ENST00000299293		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000544368	ENST00000549921		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000544368	ENST00000550389		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000544368	ENST00000397997		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000543146	ENST00000299293		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000543146	ENST00000549921		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000543146	ENST00000550389		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
5CDS-5UTR	ENST00000543146	ENST00000397997		TCGA	RV	LUSC	TCGA-NC-A5HQ-01A	CCT2	chr12	69987393	+	FRS2	chr12	69962785	+
Frame-shit	ENST00000312438	ENST00000312989		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
5CDS-5UTR	ENST00000312438	ENST00000532446		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
5CDS-5UTR	ENST00000312438	ENST00000376745		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
5CDS-intron	ENST00000312438	ENST00000358239		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-3CDS	ENST00000533438	ENST00000312989		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000533438	ENST00000532446		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000533438	ENST00000376745		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-intron	ENST00000533438	ENST00000358239		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-3CDS	ENST00000528474	ENST00000312989		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000528474	ENST00000532446		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-5UTR	ENST00000528474	ENST00000376745		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
intron-intron	ENST00000528474	ENST00000358239		TCGA	RV	LUSC	TCGA-NC-A5HK-01A	CLCF1	chr11	67140995	-	PPP1CA	chr11	67168670	-
In-frame	ENST00000309964	ENST00000264228		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
5CDS-3UTR	ENST00000309964	ENST00000514398		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
Frame-shit	ENST00000381322	ENST00000264228		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
5CDS-3UTR	ENST00000381322	ENST00000514398		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
Frame-shit	ENST00000513440	ENST00000264228		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
5CDS-3UTR	ENST00000513440	ENST00000514398		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
intron-3CDS	ENST00000506923	ENST00000264228		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
intron-3UTR	ENST00000506923	ENST00000514398		TCGA	RV	LUSC	TCGA-22-5478-01A	CLOCK	chr4	56308599	-	SRD5A3	chr4	56225513	+
5CDS-intron	ENST00000321949	ENST00000343055		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000321949	ENST00000330743		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000321949	ENST00000601246		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000338797	ENST00000343055		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000338797	ENST00000330743		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000338797	ENST00000601246		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000594658	ENST00000343055		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000594658	ENST00000330743		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000594658	ENST00000601246		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000601916	ENST00000343055		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000601916	ENST00000330743		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-intron	ENST00000601916	ENST00000601246		TCGA	RV	LUSC	TCGA-22-5478-01A	CRTC1	chr19	18860685	+	LYPD4	chr19	42343098	-
5CDS-5UTR	ENST00000357674	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000357674	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000357674	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000357674	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000357674	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000314062	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000314062	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000314062	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000314062	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000314062	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000346964	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000346964	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000346964	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000346964	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000346964	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000419354	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000419354	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000419354	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000419354	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000419354	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-5UTR	ENST00000452595	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-5UTR	ENST00000452595	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-5UTR	ENST00000452595	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-intron	ENST00000452595	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-intron	ENST00000452595	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000422288	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000422288	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000422288	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000422288	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000422288	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000448528	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000448528	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000448528	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000448528	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000448528	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-5UTR	ENST00000443183	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-5UTR	ENST00000443183	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-5UTR	ENST00000443183	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-intron	ENST00000443183	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
intron-intron	ENST00000443183	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000450955	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000450955	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000450955	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000450955	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000450955	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000392382	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000392382	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-5UTR	ENST00000392382	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000392382	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-intron	ENST00000392382	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5UTR-5UTR	ENST00000485409	ENST00000392379		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5UTR-5UTR	ENST00000485409	ENST00000392378		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5UTR-5UTR	ENST00000485409	ENST00000358186		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5UTR-intron	ENST00000485409	ENST00000441275		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5UTR-intron	ENST00000485409	ENST00000476764		TCGA	RV	LUSC	TCGA-66-2771-01A	DLG1	chr3	197009550	-	BDH1	chr3	197273357	-
5CDS-3UTR	ENST00000377452	ENST00000539805		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
5CDS-intron	ENST00000377452	ENST00000480436		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
5CDS-intron	ENST00000377452	ENST00000337743		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
5CDS-intron	ENST00000377452	ENST00000544472		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
3UTR-3UTR	ENST00000494921	ENST00000539805		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
3UTR-intron	ENST00000494921	ENST00000480436		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
3UTR-intron	ENST00000494921	ENST00000337743		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
3UTR-intron	ENST00000494921	ENST00000544472		TCGA	RV	LUSC	TCGA-33-AAS8-01A	DTD1	chr20	18576885	+	TASP1	chr20	13246829	-
5UTR-3UTR	ENST00000263026	ENST00000491890		TCGA	RV	LUSC	TCGA-77-6845-01A	EEF2K	chr16	22218000	+	C10orf35	chr10	71391236	+
5UTR-5UTR	ENST00000263026	ENST00000373279		TCGA	RV	LUSC	TCGA-77-6845-01A	EEF2K	chr16	22218000	+	C10orf35	chr10	71391236	+
intron-3UTR	ENST00000561791	ENST00000491890		TCGA	RV	LUSC	TCGA-77-6845-01A	EEF2K	chr16	22218000	+	C10orf35	chr10	71391236	+
intron-5UTR	ENST00000561791	ENST00000373279		TCGA	RV	LUSC	TCGA-77-6845-01A	EEF2K	chr16	22218000	+	C10orf35	chr10	71391236	+
5CDS-intron	ENST00000368409	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368409	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000359751	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000427683	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA4	chr1	155039916	+	FLAD1	chr1	154965189	+
Frame-shit	ENST00000269214	ENST00000313654		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
Frame-shit	ENST00000269214	ENST00000399516		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
5CDS-intron	ENST00000269214	ENST00000269217		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
5CDS-intron	ENST00000269214	ENST00000587184		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
5CDS-intron	ENST00000269214	ENST00000588770		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
intron-3CDS	ENST00000580101	ENST00000313654		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
intron-3CDS	ENST00000580101	ENST00000399516		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
intron-intron	ENST00000580101	ENST00000269217		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
intron-intron	ENST00000580101	ENST00000587184		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
intron-intron	ENST00000580101	ENST00000588770		TCGA	RV	LUSC	TCGA-66-2766-01A	ESCO1	chr18	19140820	-	LAMA3	chr18	21353461	+
Frame-shit	ENST00000445105	ENST00000439944		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000445105	ENST00000347624		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000445105	ENST00000428839		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
Frame-shit	ENST00000264730	ENST00000439944		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000264730	ENST00000347624		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000264730	ENST00000428839		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
intron-3CDS	ENST00000454309	ENST00000439944		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
intron-5UTR	ENST00000454309	ENST00000347624		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
intron-5UTR	ENST00000454309	ENST00000428839		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
In-frame	ENST00000450716	ENST00000439944		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000450716	ENST00000347624		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000450716	ENST00000428839		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
Frame-shit	ENST00000430714	ENST00000439944		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000430714	ENST00000347624		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5CDS-5UTR	ENST00000430714	ENST00000428839		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5UTR-3CDS	ENST00000466144	ENST00000439944		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5UTR-5UTR	ENST00000466144	ENST00000347624		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
5UTR-5UTR	ENST00000466144	ENST00000428839		TCGA	RV	LUSC	TCGA-51-6867-01A	FGF12	chr3	192444970	-	LRRC15	chr3	194081775	-
In-frame	ENST00000315266	ENST00000341516		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000315266	ENST00000554215		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000315266	ENST00000556847		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000315266	ENST00000557386		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000315266	ENST00000389997		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
5CDS-5UTR	ENST00000315266	ENST00000553293		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000478722	ENST00000341516		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000478722	ENST00000554215		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000478722	ENST00000556847		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000478722	ENST00000557386		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000478722	ENST00000389997		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
5CDS-5UTR	ENST00000478722	ENST00000553293		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000459628	ENST00000341516		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000459628	ENST00000554215		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000459628	ENST00000556847		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000459628	ENST00000557386		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000459628	ENST00000389997		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
5CDS-5UTR	ENST00000459628	ENST00000553293		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000543237	ENST00000341516		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000543237	ENST00000554215		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000543237	ENST00000556847		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000543237	ENST00000557386		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000543237	ENST00000389997		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
5CDS-5UTR	ENST00000543237	ENST00000553293		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000305960	ENST00000341516		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000305960	ENST00000554215		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000305960	ENST00000556847		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000305960	ENST00000557386		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
In-frame	ENST00000305960	ENST00000389997		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
5CDS-5UTR	ENST00000305960	ENST00000553293		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-3CDS	ENST00000544752	ENST00000341516		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-3CDS	ENST00000544752	ENST00000554215		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-3CDS	ENST00000544752	ENST00000556847		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-3CDS	ENST00000544752	ENST00000557386		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-3CDS	ENST00000544752	ENST00000389997		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-5UTR	ENST00000544752	ENST00000553293		TCGA	RV	LUSC	TCGA-85-A53L-01A	GPHN	chr14	67147903	+	DCAF5	chr14	69558604	-
intron-3CDS	ENST00000474396	ENST00000344537		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000474396	ENST00000355917		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000474396	ENST00000338950		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000474396	ENST00000462989		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000397095	ENST00000344537		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000397095	ENST00000355917		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000397095	ENST00000338950		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000397095	ENST00000462989		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000297468	ENST00000344537		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000297468	ENST00000355917		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000297468	ENST00000338950		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000297468	ENST00000462989		TCGA	RV	LUSC	TCGA-46-3769-01A	GPR146	chr7	1084294	+	DTNBP1	chr6	15533626	-
In-frame	ENST00000340473	ENST00000308488		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
In-frame	ENST00000340473	ENST00000360355		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
5CDS-5UTR	ENST00000340473	ENST00000480887		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
5CDS-intron	ENST00000340473	ENST00000530604		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
intron-3CDS	ENST00000494087	ENST00000308488		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
intron-3CDS	ENST00000494087	ENST00000360355		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
intron-5UTR	ENST00000494087	ENST00000480887		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
intron-intron	ENST00000494087	ENST00000530604		TCGA	RV	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	RSF1	chr11	77413540	-
Frame-shit	ENST00000478691	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
5CDS-intron	ENST00000478691	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
Frame-shit	ENST00000374616	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
5CDS-intron	ENST00000374616	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-3CDS	ENST00000476660	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-intron	ENST00000476660	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
Frame-shit	ENST00000374612	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
5CDS-intron	ENST00000374612	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
Frame-shit	ENST00000302271	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
5CDS-intron	ENST00000302271	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-3CDS	ENST00000427764	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-intron	ENST00000427764	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-3CDS	ENST00000606561	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-intron	ENST00000606561	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
Frame-shit	ENST00000426846	ENST00000361729		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
5CDS-intron	ENST00000426846	ENST00000487237		TCGA	RV	LUSC	TCGA-94-8035-01A	HNRNPR	chr1	23660011	-	E2F2	chr1	23850980	-
intron-3CDS	ENST00000376462	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376462	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376462	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000376462	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000481700	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000481700	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000481700	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000481700	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000458595	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000458595	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000458595	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000458595	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376454	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376454	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376454	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000376454	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376452	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376452	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376452	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000376452	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000430453	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000430453	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000430453	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000430453	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000307544	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000307544	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000307544	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000307544	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000396446	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000396446	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000396446	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000396446	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000396445	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000396445	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000396445	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000396445	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376451	ENST00000448637		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376451	ENST00000312675		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000376451	ENST00000543006		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-intron	ENST00000376451	ENST00000471917		TCGA	RV	LUSC	TCGA-NC-A5HP-01A	KIAA1217	chr10	24528266	+	LPP	chr3	188242453	+
intron-3CDS	ENST00000378535	ENST00000232975		TCGA	RV	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486268	-
Frame-shit	ENST00000228280	ENST00000232975		TCGA	RV	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486268	-
Frame-shit	ENST00000347404	ENST00000232975		TCGA	RV	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486268	-
5UTR-3CDS	ENST00000357116	ENST00000232975		TCGA	RV	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486268	-
Frame-shit	ENST00000373625	ENST00000344147		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
5CDS-3UTR	ENST00000373625	ENST00000479629		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
5CDS-3UTR	ENST00000373625	ENST00000373714		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
5CDS-3UTR	ENST00000373625	ENST00000546109		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
5CDS-5UTR	ENST00000373625	ENST00000422613		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3CDS	ENST00000537234	ENST00000344147		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000537234	ENST00000479629		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000537234	ENST00000373714		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000537234	ENST00000546109		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-5UTR	ENST00000537234	ENST00000422613		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3CDS	ENST00000469790	ENST00000344147		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000469790	ENST00000479629		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000469790	ENST00000373714		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000469790	ENST00000546109		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-5UTR	ENST00000469790	ENST00000422613		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3CDS	ENST00000545542	ENST00000344147		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000545542	ENST00000479629		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000545542	ENST00000373714		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3UTR	ENST00000545542	ENST00000546109		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-5UTR	ENST00000545542	ENST00000422613		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	KPNA6	chr1	32573735	+	ZCCHC17	chr1	31791956	+
intron-3CDS	ENST00000512091	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000512091	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000512091	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000512091	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000512091	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000512091	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000512091	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514591	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514591	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514591	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514591	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514591	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000514591	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000514591	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000511324	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000511324	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000511324	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000511324	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000511324	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000511324	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000511324	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000506700	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000506700	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000506700	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000506700	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000506700	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000506700	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000506700	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000509896	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000509896	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000509896	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000509896	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000509896	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000509896	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000509896	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000545650	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000545650	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000545650	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000545650	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000545650	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000545650	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000545650	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000508693	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000508693	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000508693	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000508693	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000508693	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000508693	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000508693	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507164	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507164	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507164	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507164	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507164	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000507164	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000507164	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507625	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507625	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507625	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507625	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000507625	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000507625	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000507625	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514157	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514157	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514157	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514157	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514157	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000514157	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000514157	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000504896	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000504896	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000504896	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000504896	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000504896	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000504896	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000504896	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514996	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514996	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514996	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514996	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000514996	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000514996	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000514996	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506720	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506720	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506720	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506720	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506720	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000506720	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000506720	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506746	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506746	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506746	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506746	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000506746	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000506746	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
5CDS-intron	ENST00000506746	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508946	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508946	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508946	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508946	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508946	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000508946	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000508946	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508078	ENST00000242067		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508078	ENST00000355070		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508078	ENST00000350941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508078	ENST00000354265		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-3CDS	ENST00000508078	ENST00000396127		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000508078	ENST00000425508		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
intron-intron	ENST00000508078	ENST00000482941		TCGA	RV	LUSC	TCGA-92-7341-01A	LPHN3	chr4	62383236	+	BBS9	chr7	33644477	+
In-frame	ENST00000389484	ENST00000260983		TCGA	RV	LUSC	TCGA-22-5482-01A	LRP1B	chr2	142567848	-	HECW2	chr2	197208488	-
5CDS-5UTR	ENST00000389484	ENST00000409111		TCGA	RV	LUSC	TCGA-22-5482-01A	LRP1B	chr2	142567848	-	HECW2	chr2	197208488	-
5UTR-3CDS	ENST00000486364	ENST00000260983		TCGA	RV	LUSC	TCGA-22-5482-01A	LRP1B	chr2	142567848	-	HECW2	chr2	197208488	-
5UTR-5UTR	ENST00000486364	ENST00000409111		TCGA	RV	LUSC	TCGA-22-5482-01A	LRP1B	chr2	142567848	-	HECW2	chr2	197208488	-
5UTR-3CDS	ENST00000409642	ENST00000407073		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
5UTR-intron	ENST00000409642	ENST00000478804		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
5UTR-intron	ENST00000409642	ENST00000404807		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
5UTR-3CDS	ENST00000409876	ENST00000407073		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
5UTR-intron	ENST00000409876	ENST00000478804		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
5UTR-intron	ENST00000409876	ENST00000404807		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-3CDS	ENST00000409029	ENST00000407073		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000409029	ENST00000478804		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000409029	ENST00000404807		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-3CDS	ENST00000450639	ENST00000407073		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000450639	ENST00000478804		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000450639	ENST00000404807		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-3CDS	ENST00000498249	ENST00000407073		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000498249	ENST00000478804		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000498249	ENST00000404807		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-3CDS	ENST00000280115	ENST00000407073		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000280115	ENST00000478804		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-intron	ENST00000280115	ENST00000404807		TCGA	RV	LUSC	TCGA-92-8064-01A	LYPD6B	chr2	149895315	+	MBD5	chr2	149225910	+
intron-3CDS	ENST00000454181	ENST00000220478		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
intron-3CDS	ENST00000454181	ENST00000542355		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
intron-3CDS	ENST00000558126	ENST00000220478		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
intron-3CDS	ENST00000558126	ENST00000542355		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
In-frame	ENST00000267838	ENST00000220478		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
Frame-shit	ENST00000267838	ENST00000542355		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
intron-3CDS	ENST00000560491	ENST00000220478		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
intron-3CDS	ENST00000560491	ENST00000542355		TCGA	RV	LUSC	TCGA-63-A5MR-01A	LYSMD2	chr15	52029547	-	SCG3	chr15	52011605	+
5CDS-intron	ENST00000296755	ENST00000216297		TCGA	RV	LUSC	TCGA-77-8009-01A	MAP1B	chr5	71505395	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000296755	ENST00000555943		TCGA	RV	LUSC	TCGA-77-8009-01A	MAP1B	chr5	71505395	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000504183	ENST00000216297		TCGA	RV	LUSC	TCGA-77-8009-01A	MAP1B	chr5	71505395	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000504183	ENST00000555943		TCGA	RV	LUSC	TCGA-77-8009-01A	MAP1B	chr5	71505395	+	SUPT16H	chr14	21829491	-
intron-5UTR	ENST00000395169	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395169	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000359221	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000359221	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
5UTR-5UTR	ENST00000361569	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
5UTR-5UTR	ENST00000361569	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395166	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395166	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000449047	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000449047	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395161	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395161	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000513839	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000513839	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395157	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395157	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395160	ENST00000310836		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-5UTR	ENST00000395160	ENST00000394511		TCGA	RV	LUSC	TCGA-18-3421-01A	MAPK10	chr4	87374183	-	UGT8	chr4	115544035	+
intron-3CDS	ENST00000397601	ENST00000395925		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-5UTR	ENST00000397601	ENST00000479210		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-intron	ENST00000397601	ENST00000437480		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-3CDS	ENST00000343600	ENST00000395925		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-5UTR	ENST00000343600	ENST00000479210		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-intron	ENST00000343600	ENST00000437480		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
Frame-shit	ENST00000345429	ENST00000395925		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
5CDS-5UTR	ENST00000345429	ENST00000479210		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
5CDS-intron	ENST00000345429	ENST00000437480		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-3CDS	ENST00000376673	ENST00000395925		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-5UTR	ENST00000376673	ENST00000479210		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-intron	ENST00000376673	ENST00000437480		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-3CDS	ENST00000445661	ENST00000395925		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-5UTR	ENST00000445661	ENST00000479210		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-intron	ENST00000445661	ENST00000437480		TCGA	RV	LUSC	TCGA-77-A5GH-01A	MBNL2	chr13	98018807	+	GLI3	chr7	42188067	-
intron-3CDS	ENST00000264674	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000264674	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000264674	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000264674	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000392736	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000392736	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000392736	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000392736	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000464456	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000464456	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000464456	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000464456	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000472280	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000472280	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000472280	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000472280	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
In-frame	ENST00000494292	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
In-frame	ENST00000494292	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
In-frame	ENST00000494292	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5CDS-intron	ENST00000494292	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000468789	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000468789	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000468789	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000468789	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000460814	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000460814	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000460814	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000460814	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000433243	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000433243	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-3CDS	ENST00000433243	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
intron-intron	ENST00000433243	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-3CDS	ENST00000485957	ENST00000481646		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-3CDS	ENST00000485957	ENST00000469044		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-3CDS	ENST00000485957	ENST00000491704		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000358441		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000489213		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000461822		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000485396		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000471453		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000470821		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000393058		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
5UTR-intron	ENST00000485957	ENST00000538260		TCGA	RV	LUSC	TCGA-43-A474-01A	MECOM	chr3	169098975	-	ARMC8	chr3	138007890	+
In-frame	ENST00000474524	ENST00000470487		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
In-frame	ENST00000474524	ENST00000309027		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
In-frame	ENST00000273432	ENST00000470487		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
In-frame	ENST00000273432	ENST00000309027		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
intron-3CDS	ENST00000491549	ENST00000470487		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
intron-3CDS	ENST00000491549	ENST00000309027		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
Frame-shit	ENST00000422248	ENST00000470487		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
Frame-shit	ENST00000422248	ENST00000309027		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
Frame-shit	ENST00000309237	ENST00000470487		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
Frame-shit	ENST00000309237	ENST00000309027		TCGA	RV	LUSC	TCGA-63-A5M9-01A	MED12L	chr3	150911453	+	GOLIM4	chr3	167742883	-
In-frame	ENST00000265350	ENST00000357947		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
5CDS-5UTR	ENST00000265350	ENST00000469598		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
5UTR-3CDS	ENST00000467535	ENST00000357947		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
5UTR-5UTR	ENST00000467535	ENST00000469598		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
In-frame	ENST00000409312	ENST00000357947		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
5CDS-5UTR	ENST00000409312	ENST00000469598		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
In-frame	ENST00000409060	ENST00000357947		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
5CDS-5UTR	ENST00000409060	ENST00000469598		TCGA	RV	LUSC	TCGA-60-2698-01A	MED20	chr6	41884523	-	TLL2	chr10	98240216	-
intron-3CDS	ENST00000322723	ENST00000261973		TCGA	RV	LUSC	TCGA-85-A50M-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000540173		TCGA	RV	LUSC	TCGA-85-A50M-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000527432		TCGA	RV	LUSC	TCGA-85-A50M-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000525321		TCGA	RV	LUSC	TCGA-85-A50M-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000526754		TCGA	RV	LUSC	TCGA-85-A50M-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
intron-intron	ENST00000322723	ENST00000532483		TCGA	RV	LUSC	TCGA-85-A50M-01A	NCL	chr2	232319462	-	RBM25	chr14	73572567	+
Frame-shit	ENST00000380934	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380934	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380934	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380934	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000380934	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380959	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380959	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380959	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380959	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000380959	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380953	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380953	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380953	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380953	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000380953	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397575	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397575	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397575	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397575	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000397575	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397581	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397581	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397581	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397581	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000397581	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397579	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397579	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397579	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000397579	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000397579	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000543693	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000543693	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000543693	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000543693	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000543693	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380924	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380924	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380924	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
Frame-shit	ENST00000380924	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5CDS-5UTR	ENST00000380924	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
intron-3CDS	ENST00000380921	ENST00000422223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
intron-3CDS	ENST00000380921	ENST00000380881		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
intron-3CDS	ENST00000380921	ENST00000380880		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
intron-3CDS	ENST00000380921	ENST00000380894		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
intron-5UTR	ENST00000380921	ENST00000486223		TCGA	RV	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14759899	-
5UTR-5UTR	ENST00000394054	ENST00000317012		TCGA	RV	LUSC	TCGA-77-7140-01A	NFKBIZ	chr3	101548532	+	ZBED2	chr3	111313913	-
intron-5UTR	ENST00000326151	ENST00000317012		TCGA	RV	LUSC	TCGA-77-7140-01A	NFKBIZ	chr3	101548532	+	ZBED2	chr3	111313913	-
intron-5UTR	ENST00000326172	ENST00000317012		TCGA	RV	LUSC	TCGA-77-7140-01A	NFKBIZ	chr3	101548532	+	ZBED2	chr3	111313913	-
In-frame	ENST00000379540	ENST00000541043		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
In-frame	ENST00000379540	ENST00000379923		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
In-frame	ENST00000379540	ENST00000309951		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
In-frame	ENST00000379521	ENST00000541043		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
In-frame	ENST00000379521	ENST00000379923		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
In-frame	ENST00000379521	ENST00000309951		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
intron-3CDS	ENST00000318524	ENST00000541043		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
intron-3CDS	ENST00000318524	ENST00000379923		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
intron-3CDS	ENST00000318524	ENST00000309951		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
intron-3CDS	ENST00000463421	ENST00000541043		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
intron-3CDS	ENST00000463421	ENST00000379923		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
intron-3CDS	ENST00000463421	ENST00000309951		TCGA	RV	LUSC	TCGA-18-4721-01A	NFX1	chr9	33351788	+	ACO1	chr9	32440463	+
5CDS-intron	ENST00000377705	ENST00000465508		TCGA	RV	LUSC	TCGA-77-A5GH-01A	NOL9	chr1	6609631	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000377705	ENST00000349363		TCGA	RV	LUSC	TCGA-77-A5GH-01A	NOL9	chr1	6609631	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000377705	ENST00000377577		TCGA	RV	LUSC	TCGA-77-A5GH-01A	NOL9	chr1	6609631	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000377705	ENST00000294401		TCGA	RV	LUSC	TCGA-77-A5GH-01A	NOL9	chr1	6609631	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000377705	ENST00000542246		TCGA	RV	LUSC	TCGA-77-A5GH-01A	NOL9	chr1	6609631	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000377705	ENST00000377573		TCGA	RV	LUSC	TCGA-77-A5GH-01A	NOL9	chr1	6609631	-	DNAJC11	chr1	6714099	-
5UTR-3CDS	ENST00000361439	ENST00000221480		TCGA	RV	LUSC	TCGA-90-7964-01A	NSMCE1	chr16	27280027	-	PEX11G	chr19	7547097	-
5UTR-3CDS	ENST00000361439	ENST00000593942		TCGA	RV	LUSC	TCGA-90-7964-01A	NSMCE1	chr16	27280027	-	PEX11G	chr19	7547097	-
5UTR-5UTR	ENST00000361439	ENST00000599519		TCGA	RV	LUSC	TCGA-90-7964-01A	NSMCE1	chr16	27280027	-	PEX11G	chr19	7547097	-
intron-3CDS	ENST00000565384	ENST00000221480		TCGA	RV	LUSC	TCGA-90-7964-01A	NSMCE1	chr16	27280027	-	PEX11G	chr19	7547097	-
intron-3CDS	ENST00000565384	ENST00000593942		TCGA	RV	LUSC	TCGA-90-7964-01A	NSMCE1	chr16	27280027	-	PEX11G	chr19	7547097	-
intron-5UTR	ENST00000565384	ENST00000599519		TCGA	RV	LUSC	TCGA-90-7964-01A	NSMCE1	chr16	27280027	-	PEX11G	chr19	7547097	-
Frame-shit	ENST00000320580	ENST00000265689		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000320580	ENST00000533728		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
5CDS-5UTR	ENST00000320580	ENST00000356135		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
intron-3CDS	ENST00000529757	ENST00000265689		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
intron-5UTR	ENST00000529757	ENST00000533728		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
intron-5UTR	ENST00000529757	ENST00000356135		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
intron-3CDS	ENST00000524815	ENST00000265689		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
intron-5UTR	ENST00000524815	ENST00000533728		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
intron-5UTR	ENST00000524815	ENST00000356135		TCGA	RV	LUSC	TCGA-85-8276-01A	PACS1	chr11	65838313	+	CHKA	chr11	67821514	-
Frame-shit	ENST00000371953	ENST00000394289		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
Frame-shit	ENST00000371953	ENST00000260753		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
In-frame	ENST00000371953	ENST00000416354		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
Frame-shit	ENST00000371953	ENST00000371728		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
5CDS-3UTR	ENST00000371953	ENST00000478929		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
intron-3CDS	ENST00000472832	ENST00000394289		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
intron-3CDS	ENST00000472832	ENST00000260753		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
intron-3CDS	ENST00000472832	ENST00000416354		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
intron-3CDS	ENST00000472832	ENST00000371728		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
intron-3UTR	ENST00000472832	ENST00000478929		TCGA	RV	LUSC	TCGA-34-A5IX-01A	PTEN	chr10	89653866	+	KIF20B	chr10	91497144	+
5CDS-5UTR	ENST00000443358	ENST00000377263		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000443358	ENST00000400904		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-intron	ENST00000443358	ENST00000537447		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000443358	ENST00000377258		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000443358	ENST00000377256		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000376649	ENST00000377263		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000376649	ENST00000400904		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-intron	ENST00000376649	ENST00000537447		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000376649	ENST00000377258		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000376649	ENST00000377256		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000440818	ENST00000377263		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000440818	ENST00000400904		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-intron	ENST00000440818	ENST00000537447		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000440818	ENST00000377258		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000440818	ENST00000377256		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000542167	ENST00000377263		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000542167	ENST00000400904		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-intron	ENST00000542167	ENST00000537447		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000542167	ENST00000377258		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000542167	ENST00000377256		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000535067	ENST00000377263		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000535067	ENST00000400904		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-intron	ENST00000535067	ENST00000537447		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000535067	ENST00000377258		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
5CDS-5UTR	ENST00000535067	ENST00000377256		TCGA	RV	LUSC	TCGA-56-8625-01A	PUS1	chr12	132416857	+	CTNNBIP1	chr1	9938047	-
In-frame	ENST00000452898	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000452898	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000452898	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
In-frame	ENST00000286364	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000286364	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000286364	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-3CDS	ENST00000509118	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000509118	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000509118	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
In-frame	ENST00000399799	ENST00000259605		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
5CDS-intron	ENST00000399799	ENST00000353739		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
5CDS-5UTR	ENST00000399799	ENST00000357058		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
5CDS-intron	ENST00000399799	ENST00000350199		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
5CDS-5UTR	ENST00000399799	ENST00000377885		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
5CDS-intron	ENST00000399799	ENST00000377877		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
5CDS-5UTR	ENST00000399799	ENST00000491349		TCGA	RV	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36390613	-
Frame-shit	ENST00000261991	ENST00000267615		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000261991	ENST00000354313		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000261991	ENST00000556603		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5CDS-5UTR	ENST00000261991	ENST00000555495		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5CDS-5UTR	ENST00000261991	ENST00000556954		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000536315	ENST00000267615		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000536315	ENST00000354313		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000536315	ENST00000556603		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5CDS-5UTR	ENST00000536315	ENST00000555495		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5CDS-5UTR	ENST00000536315	ENST00000556954		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000418736	ENST00000267615		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000418736	ENST00000354313		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
Frame-shit	ENST00000418736	ENST00000556603		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5CDS-5UTR	ENST00000418736	ENST00000555495		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5CDS-5UTR	ENST00000418736	ENST00000556954		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
intron-3CDS	ENST00000556304	ENST00000267615		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
intron-3CDS	ENST00000556304	ENST00000354313		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
intron-3CDS	ENST00000556304	ENST00000556603		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
intron-5UTR	ENST00000556304	ENST00000555495		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
intron-5UTR	ENST00000556304	ENST00000556954		TCGA	RV	LUSC	TCGA-77-A5G6-01A	RPS6KA5	chr14	91386550	-	ITPK1	chr14	93483146	-
5UTR-3CDS	ENST00000242059	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-5UTR	ENST00000242059	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-5UTR	ENST00000242059	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-3CDS	ENST00000426154	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000426154	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000426154	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-3CDS	ENST00000425819	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-5UTR	ENST00000425819	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-5UTR	ENST00000425819	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-3CDS	ENST00000434476	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000434476	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000434476	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-3CDS	ENST00000494620	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000494620	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000494620	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-3CDS	ENST00000409570	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-5UTR	ENST00000409570	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
5UTR-5UTR	ENST00000409570	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-3CDS	ENST00000409497	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000409497	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000409497	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-3CDS	ENST00000416113	ENST00000332629		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000416113	ENST00000429115		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-5UTR	ENST00000416113	ENST00000433160		TCGA	RV	LUSC	TCGA-66-2769-01A	SCRN1	chr7	30029258	-	WDR53	chr3	196281678	-
intron-3CDS	ENST00000545472	ENST00000306065		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
intron-3CDS	ENST00000545472	ENST00000587352		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
In-frame	ENST00000296257	ENST00000306065		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
In-frame	ENST00000296257	ENST00000587352		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
5UTR-3CDS	ENST00000427465	ENST00000306065		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
5UTR-3CDS	ENST00000427465	ENST00000587352		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
intron-3CDS	ENST00000465201	ENST00000306065		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
intron-3CDS	ENST00000465201	ENST00000587352		TCGA	RV	LUSC	TCGA-21-1071-01A	SENP2	chr3	185304302	+	ANKRD27	chr19	33133051	-
In-frame	ENST00000328041	ENST00000217246		TCGA	RV	LUSC	TCGA-98-8021-01A	SLC24A3	chr20	19566188	+	MACROD2	chr20	15843390	+
In-frame	ENST00000328041	ENST00000310348		TCGA	RV	LUSC	TCGA-98-8021-01A	SLC24A3	chr20	19566188	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000328041	ENST00000464883		TCGA	RV	LUSC	TCGA-98-8021-01A	SLC24A3	chr20	19566188	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000328041	ENST00000402914		TCGA	RV	LUSC	TCGA-98-8021-01A	SLC24A3	chr20	19566188	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000328041	ENST00000378058		TCGA	RV	LUSC	TCGA-98-8021-01A	SLC24A3	chr20	19566188	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000328041	ENST00000407045		TCGA	RV	LUSC	TCGA-98-8021-01A	SLC24A3	chr20	19566188	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000222990	ENST00000463747		TCGA	RV	LUSC	TCGA-39-5035-01A	SNX8	chr7	2353963	-	KDELR2	chr7	6502806	-
5CDS-intron	ENST00000222990	ENST00000258739		TCGA	RV	LUSC	TCGA-39-5035-01A	SNX8	chr7	2353963	-	KDELR2	chr7	6502806	-
5CDS-intron	ENST00000222990	ENST00000490996		TCGA	RV	LUSC	TCGA-39-5035-01A	SNX8	chr7	2353963	-	KDELR2	chr7	6502806	-
5CDS-intron	ENST00000455789	ENST00000487143		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000455789	ENST00000355999		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000310015	ENST00000487143		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000310015	ENST00000355999		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000418194	ENST00000487143		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000418194	ENST00000355999		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
intron-intron	ENST00000483084	ENST00000487143		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
intron-intron	ENST00000483084	ENST00000355999		TCGA	RV	LUSC	TCGA-34-5236-01A	SP3	chr2	174777798	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000599117	ENST00000388922		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000599117	ENST00000550683		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000599117	ENST00000419526		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000599117	ENST00000550084		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000432763	ENST00000388922		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000432763	ENST00000550683		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000432763	ENST00000419526		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000432763	ENST00000550084		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000402194	ENST00000388922		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000402194	ENST00000550683		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000402194	ENST00000419526		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000402194	ENST00000550084		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000359191	ENST00000388922		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000359191	ENST00000550683		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000359191	ENST00000419526		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000359191	ENST00000550084		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000598725	ENST00000388922		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000598725	ENST00000550683		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000598725	ENST00000419526		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000598725	ENST00000550084		TCGA	RV	LUSC	TCGA-77-8007-01A	SUPT5H	chr19	39967306	+	ACVRL1	chr12	52306155	+
Frame-shit	ENST00000377636	ENST00000377669		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
Frame-shit	ENST00000377636	ENST00000377666		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5CDS-5UTR	ENST00000377636	ENST00000472022		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
Frame-shit	ENST00000431480	ENST00000377669		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
Frame-shit	ENST00000431480	ENST00000377666		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5CDS-5UTR	ENST00000431480	ENST00000472022		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5UTR-3CDS	ENST00000425511	ENST00000377669		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5UTR-3CDS	ENST00000425511	ENST00000377666		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5UTR-5UTR	ENST00000425511	ENST00000472022		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
Frame-shit	ENST00000377625	ENST00000377669		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
Frame-shit	ENST00000377625	ENST00000377666		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5CDS-5UTR	ENST00000377625	ENST00000472022		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
intron-3CDS	ENST00000478591	ENST00000377669		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
intron-3CDS	ENST00000478591	ENST00000377666		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
intron-5UTR	ENST00000478591	ENST00000472022		TCGA	RV	LUSC	TCGA-77-A5G3-01A	TBC1D4	chr13	76055406	-	KLF12	chr13	74387424	-
5UTR-3CDS	ENST00000582809	ENST00000589222		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-3CDS	ENST00000582809	ENST00000407086		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-3CDS	ENST00000582809	ENST00000390652		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-3CDS	ENST00000582809	ENST00000408905		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-3CDS	ENST00000582809	ENST00000588462		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-intron	ENST00000582809	ENST00000585744		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-intron	ENST00000582809	ENST00000588874		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5UTR-intron	ENST00000582809	ENST00000585812		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-3CDS	ENST00000577616	ENST00000589222		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-3CDS	ENST00000577616	ENST00000407086		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-3CDS	ENST00000577616	ENST00000390652		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-3CDS	ENST00000577616	ENST00000408905		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-3CDS	ENST00000577616	ENST00000588462		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-intron	ENST00000577616	ENST00000585744		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-intron	ENST00000577616	ENST00000588874		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
3UTR-intron	ENST00000577616	ENST00000585812		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000326270	ENST00000589222		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000326270	ENST00000407086		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000326270	ENST00000390652		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000326270	ENST00000408905		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000326270	ENST00000588462		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000326270	ENST00000585744		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000326270	ENST00000588874		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000326270	ENST00000585812		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346027	ENST00000589222		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346027	ENST00000407086		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346027	ENST00000390652		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346027	ENST00000408905		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000346027	ENST00000588462		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000346027	ENST00000585744		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000346027	ENST00000588874		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000346027	ENST00000585812		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000343388	ENST00000589222		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000343388	ENST00000407086		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000343388	ENST00000390652		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000343388	ENST00000408905		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000343388	ENST00000588462		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000343388	ENST00000585744		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000343388	ENST00000588874		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000343388	ENST00000585812		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000542523	ENST00000589222		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000542523	ENST00000407086		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000542523	ENST00000390652		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000542523	ENST00000408905		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000542523	ENST00000588462		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000542523	ENST00000585744		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000542523	ENST00000588874		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
5CDS-intron	ENST00000542523	ENST00000585812		TCGA	RV	LUSC	TCGA-94-7943-01A	TLK2	chr17	60558567	+	BCAS3	chr17	58945937	+
Frame-shit	ENST00000297533	ENST00000463381		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000297533	ENST00000473312		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000297533	ENST00000479901		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000297533	ENST00000397238		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000297533	ENST00000476375		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000297533	ENST00000335367		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
In-frame	ENST00000392818	ENST00000463381		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000392818	ENST00000473312		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000392818	ENST00000479901		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000392818	ENST00000397238		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000392818	ENST00000476375		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000392818	ENST00000335367		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
In-frame	ENST00000462940	ENST00000463381		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000462940	ENST00000473312		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000462940	ENST00000479901		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000462940	ENST00000397238		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000462940	ENST00000476375		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000462940	ENST00000335367		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
Frame-shit	ENST00000482202	ENST00000463381		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000482202	ENST00000473312		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000482202	ENST00000479901		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000482202	ENST00000397238		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000482202	ENST00000476375		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000482202	ENST00000335367		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
In-frame	ENST00000476627	ENST00000463381		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000476627	ENST00000473312		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000476627	ENST00000479901		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000476627	ENST00000397238		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000476627	ENST00000476375		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
5CDS-intron	ENST00000476627	ENST00000335367		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TMUB1	chr7	150779262	-	AGAP3	chr7	150825667	+
Frame-shit	ENST00000361337	ENST00000359271		TCGA	RV	LUSC	TCGA-6A-AB49-01A	TOP1	chr20	39746936	+	SLC2A10	chr20	45362395	+
5CDS-intron	ENST00000361337	ENST00000486000		TCGA	RV	LUSC	TCGA-6A-AB49-01A	TOP1	chr20	39746936	+	SLC2A10	chr20	45362395	+
In-frame	ENST00000369426	ENST00000369409		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000369426	ENST00000369407		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000369426	ENST00000482968		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
In-frame	ENST00000235521	ENST00000369409		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000235521	ENST00000369407		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000235521	ENST00000482968		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
In-frame	ENST00000537870	ENST00000369409		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000537870	ENST00000369407		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
5CDS-intron	ENST00000537870	ENST00000482968		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000497761	ENST00000369409		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000497761	ENST00000369407		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
intron-intron	ENST00000497761	ENST00000482968		TCGA	RV	LUSC	TCGA-60-2725-01A	WARS2	chr1	119618973	-	PHGDH	chr1	120263793	+
Frame-shit	ENST00000317025	ENST00000519416		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000317025	ENST00000520615		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000317025	ENST00000443286		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000520340		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000518415		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000522752		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000348567		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000330691		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000317827		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000379931		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000276520		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000520973		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000317025	ENST00000520611		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000433384	ENST00000519416		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000433384	ENST00000520615		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000433384	ENST00000443286		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000520340		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000518415		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000522752		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000348567		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000330691		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000317827		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000379931		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000276520		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000520973		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000433384	ENST00000520611		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000527502	ENST00000519416		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000527502	ENST00000520615		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000527502	ENST00000443286		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000520340		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000518415		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000522752		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000348567		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000330691		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000317827		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000379931		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000276520		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000520973		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000527502	ENST00000520611		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000316985	ENST00000519416		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000316985	ENST00000520615		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
Frame-shit	ENST00000316985	ENST00000443286		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000520340		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000518415		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000522752		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000348567		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000330691		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000317827		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000379931		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000276520		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000520973		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5CDS-intron	ENST00000316985	ENST00000520611		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-3CDS	ENST00000525081	ENST00000519416		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-3CDS	ENST00000525081	ENST00000520615		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-3CDS	ENST00000525081	ENST00000443286		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000520340		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000518415		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000522752		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000348567		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000330691		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000317827		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000379931		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000276520		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000520973		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
5UTR-intron	ENST00000525081	ENST00000520611		TCGA	RV	LUSC	TCGA-77-8143-01A	WHSC1L1	chr8	38176413	-	TACC1	chr8	38705473	+
intron-3CDS	ENST00000530124	ENST00000528416		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-3CDS	ENST00000530124	ENST00000415073		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-3CDS	ENST00000530124	ENST00000252268		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-intron	ENST00000530124	ENST00000532264		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
In-frame	ENST00000257247	ENST00000528416		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
In-frame	ENST00000257247	ENST00000415073		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
In-frame	ENST00000257247	ENST00000252268		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
5CDS-intron	ENST00000257247	ENST00000532264		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
5UTR-3CDS	ENST00000525875	ENST00000528416		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
5UTR-3CDS	ENST00000525875	ENST00000415073		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
5UTR-3CDS	ENST00000525875	ENST00000252268		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
5UTR-intron	ENST00000525875	ENST00000532264		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-3CDS	ENST00000378024	ENST00000528416		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-3CDS	ENST00000378024	ENST00000415073		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-3CDS	ENST00000378024	ENST00000252268		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
intron-intron	ENST00000378024	ENST00000532264		TCGA	RV	LUSC	TCGA-85-8276-01A	AHNAK	chr11	62259204	-	DPF2	chr11	65116321	+
In-frame	ENST00000306065	ENST00000270001		TCGA	RV	LUSC	TCGA-66-2742-01A	ANKRD27	chr19	33134029	-	ZFP14	chr19	36832492	-
5CDS-intron	ENST00000306065	ENST00000589280		TCGA	RV	LUSC	TCGA-66-2742-01A	ANKRD27	chr19	33134029	-	ZFP14	chr19	36832492	-
In-frame	ENST00000587352	ENST00000270001		TCGA	RV	LUSC	TCGA-66-2742-01A	ANKRD27	chr19	33134029	-	ZFP14	chr19	36832492	-
5CDS-intron	ENST00000587352	ENST00000589280		TCGA	RV	LUSC	TCGA-66-2742-01A	ANKRD27	chr19	33134029	-	ZFP14	chr19	36832492	-
5UTR-intron	ENST00000434513	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-intron	ENST00000434513	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-3UTR	ENST00000434513	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-intron	ENST00000361221	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-intron	ENST00000361221	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-3UTR	ENST00000361221	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-intron	ENST00000452522	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-intron	ENST00000452522	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
5UTR-3UTR	ENST00000452522	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000375415	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000375415	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-3UTR	ENST00000375415	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000375420	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000375420	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-3UTR	ENST00000375420	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000469726	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000469726	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-3UTR	ENST00000469726	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000375408	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000375408	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-3UTR	ENST00000375408	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000167825	ENST00000375453		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-intron	ENST00000167825	ENST00000375448		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-3UTR	ENST00000167825	ENST00000487048		TCGA	RV	LUSC	TCGA-66-2756-01A	ARHGEF10L	chr1	17866445	+	PADI4	chr1	17681028	+
intron-3CDS	ENST00000505330	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000505330	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000505330	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504381	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000504381	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000507488	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000507488	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000393221	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000393221	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000533801	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000533801	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000510168	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000510168	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000508532	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000508532	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000504948	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000504948	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000513801	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000513801	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000328560	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000328560	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000428331	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000428331	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000359644	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000359644	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000422190	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
5CDS-intron	ENST00000422190	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000282488		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000282486		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000355460		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000493459		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000324210		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000498502		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000545754		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000357472		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000324196		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000485910		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000463374		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000492948		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000509150	ENST00000485509		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000509150	ENST00000461436		TCGA	RV	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613619	+	MBNL1	chr3	152132730	+
In-frame	ENST00000395863	ENST00000374820		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
In-frame	ENST00000395863	ENST00000452740		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000395863	ENST00000480175		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
In-frame	ENST00000395864	ENST00000374820		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
In-frame	ENST00000395864	ENST00000452740		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000395864	ENST00000480175		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
In-frame	ENST00000450594	ENST00000374820		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
In-frame	ENST00000450594	ENST00000452740		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000450594	ENST00000480175		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
intron-3CDS	ENST00000460817	ENST00000374820		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
intron-3CDS	ENST00000460817	ENST00000452740		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
intron-5UTR	ENST00000460817	ENST00000480175		TCGA	RV	LUSC	TCGA-85-8664-01A	BMP7	chr20	55840761	-	PIGU	chr20	33176411	-
Frame-shit	ENST00000253407	ENST00000580123		TCGA	RV	LUSC	TCGA-66-2800-01A	C1QL1	chr17	43044820	-	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000253407	ENST00000585293		TCGA	RV	LUSC	TCGA-66-2800-01A	C1QL1	chr17	43044820	-	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000253407	ENST00000329783		TCGA	RV	LUSC	TCGA-66-2800-01A	C1QL1	chr17	43044820	-	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000253407	ENST00000450736		TCGA	RV	LUSC	TCGA-66-2800-01A	C1QL1	chr17	43044820	-	SLC16A5	chr17	73094133	+
5CDS-3UTR	ENST00000253407	ENST00000538213		TCGA	RV	LUSC	TCGA-66-2800-01A	C1QL1	chr17	43044820	-	SLC16A5	chr17	73094133	+
5UTR-3CDS	ENST00000335793	ENST00000392650		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000335793	ENST00000388726		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-5UTR	ENST00000335793	ENST00000410094		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000439510	ENST00000392650		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000439510	ENST00000388726		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-5UTR	ENST00000439510	ENST00000410094		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000581014	ENST00000392650		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-3CDS	ENST00000581014	ENST00000388726		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
5UTR-5UTR	ENST00000581014	ENST00000410094		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
intron-3CDS	ENST00000582303	ENST00000392650		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
intron-3CDS	ENST00000582303	ENST00000388726		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
intron-5UTR	ENST00000582303	ENST00000410094		TCGA	RV	LUSC	TCGA-43-8115-01A	CDC42EP4	chr17	71308032	-	SDK2	chr17	71348776	-
Frame-shit	ENST00000268206	ENST00000281156		TCGA	RV	LUSC	TCGA-21-1072-01A	EFTUD1	chr15	82507058	-	KHDRBS2	chr6	62390965	-
Frame-shit	ENST00000359445	ENST00000281156		TCGA	RV	LUSC	TCGA-21-1072-01A	EFTUD1	chr15	82507058	-	KHDRBS2	chr6	62390965	-
intron-3CDS	ENST00000561331	ENST00000281156		TCGA	RV	LUSC	TCGA-21-1072-01A	EFTUD1	chr15	82507058	-	KHDRBS2	chr6	62390965	-
5UTR-3CDS	ENST00000264211	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000264211	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000264211	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000264211	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000264211	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000264211	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000400422	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000400422	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000400422	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000400422	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000400422	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000400422	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000602326	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000602326	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000602326	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000602326	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000602326	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000602326	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374935	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374935	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374935	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374935	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374935	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000374935	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374937	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374937	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374937	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374937	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374937	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000374937	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000536266	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000536266	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000536266	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000536266	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000536266	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-intron	ENST00000536266	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000374933	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000374933	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000374933	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000374933	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000374933	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-intron	ENST00000374933	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000544689	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000544689	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000544689	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000544689	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000544689	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-intron	ENST00000544689	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000356916	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000356916	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000356916	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000356916	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000356916	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000356916	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374927	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374927	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374927	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374927	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-3CDS	ENST00000374927	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
5UTR-intron	ENST00000374927	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000537738	ENST00000415912		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000537738	ENST00000357071		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000537738	ENST00000374893		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000537738	ENST00000436918		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-3CDS	ENST00000537738	ENST00000264205		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
intron-intron	ENST00000537738	ENST00000528294		TCGA	RV	LUSC	TCGA-85-8580-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21586885	-
In-frame	ENST00000292147	ENST00000222374		TCGA	RV	LUSC	TCGA-66-2758-01A	ETHE1	chr19	44015589	-	CADM4	chr19	44131942	-
5CDS-intron	ENST00000292147	ENST00000593506		TCGA	RV	LUSC	TCGA-66-2758-01A	ETHE1	chr19	44015589	-	CADM4	chr19	44131942	-
In-frame	ENST00000600651	ENST00000222374		TCGA	RV	LUSC	TCGA-66-2758-01A	ETHE1	chr19	44015589	-	CADM4	chr19	44131942	-
5CDS-intron	ENST00000600651	ENST00000593506		TCGA	RV	LUSC	TCGA-66-2758-01A	ETHE1	chr19	44015589	-	CADM4	chr19	44131942	-
Frame-shit	ENST00000264553	ENST00000348943		TCGA	RV	LUSC	TCGA-85-8048-01A	GZMM	chr19	547436	+	HNRNPM	chr19	8553575	+
Frame-shit	ENST00000264553	ENST00000325495		TCGA	RV	LUSC	TCGA-85-8048-01A	GZMM	chr19	547436	+	HNRNPM	chr19	8553575	+
5CDS-3UTR	ENST00000264553	ENST00000602219		TCGA	RV	LUSC	TCGA-85-8048-01A	GZMM	chr19	547436	+	HNRNPM	chr19	8553575	+
5CDS-5UTR	ENST00000392332	ENST00000392329		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-5UTR	ENST00000392332	ENST00000322522		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-5UTR	ENST00000392332	ENST00000541441		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-3UTR	ENST00000392332	ENST00000417336		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-5UTR	ENST00000359678	ENST00000392329		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-5UTR	ENST00000359678	ENST00000322522		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-5UTR	ENST00000359678	ENST00000541441		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
5CDS-3UTR	ENST00000359678	ENST00000417336		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-5UTR	ENST00000410045	ENST00000392329		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-5UTR	ENST00000410045	ENST00000322522		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-5UTR	ENST00000410045	ENST00000541441		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-3UTR	ENST00000410045	ENST00000417336		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-5UTR	ENST00000486981	ENST00000392329		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-5UTR	ENST00000486981	ENST00000322522		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-5UTR	ENST00000486981	ENST00000541441		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-3UTR	ENST00000486981	ENST00000417336		TCGA	RV	LUSC	TCGA-56-8083-01A	HIBCH	chr2	191184442	-	INPP1	chr2	191224765	+
intron-3CDS	ENST00000476233	ENST00000379802		TCGA	RV	LUSC	TCGA-22-0944-01A	HNRNPA2B1	chr7	26231467	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000476233	ENST00000418664		TCGA	RV	LUSC	TCGA-22-0944-01A	HNRNPA2B1	chr7	26231467	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000354667	ENST00000379802		TCGA	RV	LUSC	TCGA-22-0944-01A	HNRNPA2B1	chr7	26231467	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000354667	ENST00000418664		TCGA	RV	LUSC	TCGA-22-0944-01A	HNRNPA2B1	chr7	26231467	-	DSP	chr6	7575528	+
In-frame	ENST00000356674	ENST00000379802		TCGA	RV	LUSC	TCGA-22-0944-01A	HNRNPA2B1	chr7	26231467	-	DSP	chr6	7575528	+
In-frame	ENST00000356674	ENST00000418664		TCGA	RV	LUSC	TCGA-22-0944-01A	HNRNPA2B1	chr7	26231467	-	DSP	chr6	7575528	+
In-frame	ENST00000356956	ENST00000360448		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
In-frame	ENST00000356956	ENST00000297239		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
5CDS-intron	ENST00000356956	ENST00000367081		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
5CDS-intron	ENST00000356956	ENST00000469735		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
intron-3CDS	ENST00000475584	ENST00000360448		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
intron-3CDS	ENST00000475584	ENST00000297239		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
intron-intron	ENST00000475584	ENST00000367081		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
intron-intron	ENST00000475584	ENST00000469735		TCGA	RV	LUSC	TCGA-66-2800-01A	IGF2R	chr6	160390427	+	SYTL3	chr6	159129354	+
5UTR-3CDS	ENST00000367021	ENST00000414007		TCGA	RV	LUSC	TCGA-94-8490-01A	IRF6	chr1	209979292	-	SRGAP2	chr1	206610315	+
5UTR-5UTR	ENST00000367021	ENST00000419187		TCGA	RV	LUSC	TCGA-94-8490-01A	IRF6	chr1	209979292	-	SRGAP2	chr1	206610315	+
5UTR-intron	ENST00000367021	ENST00000471256		TCGA	RV	LUSC	TCGA-94-8490-01A	IRF6	chr1	209979292	-	SRGAP2	chr1	206610315	+
5UTR-3CDS	ENST00000542854	ENST00000414007		TCGA	RV	LUSC	TCGA-94-8490-01A	IRF6	chr1	209979292	-	SRGAP2	chr1	206610315	+
5UTR-5UTR	ENST00000542854	ENST00000419187		TCGA	RV	LUSC	TCGA-94-8490-01A	IRF6	chr1	209979292	-	SRGAP2	chr1	206610315	+
5UTR-intron	ENST00000542854	ENST00000471256		TCGA	RV	LUSC	TCGA-94-8490-01A	IRF6	chr1	209979292	-	SRGAP2	chr1	206610315	+
In-frame	ENST00000328879	ENST00000400451		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000328879	ENST00000403682		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000328879	ENST00000357502		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
In-frame	ENST00000328879	ENST00000356671		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
In-frame	ENST00000328879	ENST00000405993		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000440659	ENST00000400451		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000440659	ENST00000403682		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000440659	ENST00000357502		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000440659	ENST00000356671		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000440659	ENST00000405993		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000470335	ENST00000400451		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000470335	ENST00000403682		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000470335	ENST00000357502		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000470335	ENST00000356671		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
5UTR-3CDS	ENST00000470335	ENST00000405993		TCGA	RV	LUSC	TCGA-66-2793-01A	KLHL22	chr22	20843272	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000361566	ENST00000524630		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529919		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000399039		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000360682		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000361796		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000361391		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000530094		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000428599		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000361332		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000527467		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000415361		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532245		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532463		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000528232		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529986		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000531014		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000358694		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000526772		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532787		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000533667		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529873		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000525902		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000529526		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532649		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000426142		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000532844		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000528621		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000399050		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000526357		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000530748		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000534579		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
Frame-shit	ENST00000361566	ENST00000526938		TCGA	RV	LUSC	TCGA-56-8082-01A	KRT19	chr17	39679869	-	CTNND1	chr11	57574387	+
In-frame	ENST00000524419	ENST00000310112		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000524419	ENST00000393693		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000524419	ENST00000510387		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000524419	ENST00000506696		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000528989	ENST00000310112		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000528989	ENST00000393693		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000528989	ENST00000510387		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000528989	ENST00000506696		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000315571	ENST00000310112		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000315571	ENST00000393693		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000315571	ENST00000510387		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
In-frame	ENST00000315571	ENST00000506696		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
intron-3CDS	ENST00000529759	ENST00000310112		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
intron-3CDS	ENST00000529759	ENST00000393693		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
intron-3CDS	ENST00000529759	ENST00000510387		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
intron-3CDS	ENST00000529759	ENST00000506696		TCGA	RV	LUSC	TCGA-85-A50M-01A	LDLRAD3	chr11	36120011	+	SNCB	chr5	176053762	-
5CDS-intron	ENST00000359015	ENST00000368416		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359015	ENST00000368417		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359015	ENST00000546092		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359015	ENST00000545433		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359015	ENST00000476571		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000355845	ENST00000368416		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000355845	ENST00000368417		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000355845	ENST00000546092		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000355845	ENST00000545433		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000355845	ENST00000476571		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000463140	ENST00000368416		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000463140	ENST00000368417		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000463140	ENST00000546092		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000463140	ENST00000545433		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
intron-intron	ENST00000463140	ENST00000476571		TCGA	RV	LUSC	TCGA-66-2759-01A	MAP3K5	chr6	137041588	-	NKAIN2	chr6	125112485	+
5UTR-3CDS	ENST00000401950	ENST00000382363		TCGA	RV	LUSC	TCGA-43-5668-01A	MTMR3	chr22	30353077	+	RNF215	chr22	30776390	-
5UTR-3CDS	ENST00000333027	ENST00000382363		TCGA	RV	LUSC	TCGA-43-5668-01A	MTMR3	chr22	30353077	+	RNF215	chr22	30776390	-
5UTR-3CDS	ENST00000323630	ENST00000382363		TCGA	RV	LUSC	TCGA-43-5668-01A	MTMR3	chr22	30353077	+	RNF215	chr22	30776390	-
5UTR-3CDS	ENST00000351488	ENST00000382363		TCGA	RV	LUSC	TCGA-43-5668-01A	MTMR3	chr22	30353077	+	RNF215	chr22	30776390	-
intron-3CDS	ENST00000406629	ENST00000382363		TCGA	RV	LUSC	TCGA-43-5668-01A	MTMR3	chr22	30353077	+	RNF215	chr22	30776390	-
3UTR-3CDS	ENST00000415511	ENST00000382363		TCGA	RV	LUSC	TCGA-43-5668-01A	MTMR3	chr22	30353077	+	RNF215	chr22	30776390	-
In-frame	ENST00000449802	ENST00000380338		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
5CDS-5UTR	ENST00000449802	ENST00000355930		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
5CDS-5UTR	ENST00000449802	ENST00000429426		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
5CDS-5UTR	ENST00000449802	ENST00000475957		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
5CDS-5UTR	ENST00000449802	ENST00000380321		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
intron-3CDS	ENST00000478884	ENST00000380338		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
intron-5UTR	ENST00000478884	ENST00000355930		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
intron-5UTR	ENST00000478884	ENST00000429426		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
intron-5UTR	ENST00000478884	ENST00000475957		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
intron-5UTR	ENST00000478884	ENST00000380321		TCGA	RV	LUSC	TCGA-68-7755-01A	NBEAL1	chr2	204067504	+	MLLT3	chr9	20365742	-
Frame-shit	ENST00000369780	ENST00000369797		TCGA	RV	LUSC	TCGA-22-1012-01A	NEURL	chr10	105254229	+	PDCD11	chr10	105165742	+
5CDS-intron	ENST00000369780	ENST00000490787		TCGA	RV	LUSC	TCGA-22-1012-01A	NEURL	chr10	105254229	+	PDCD11	chr10	105165742	+
intron-3CDS	ENST00000369777	ENST00000369797		TCGA	RV	LUSC	TCGA-22-1012-01A	NEURL	chr10	105254229	+	PDCD11	chr10	105165742	+
intron-intron	ENST00000369777	ENST00000490787		TCGA	RV	LUSC	TCGA-22-1012-01A	NEURL	chr10	105254229	+	PDCD11	chr10	105165742	+
intron-3CDS	ENST00000465048	ENST00000369797		TCGA	RV	LUSC	TCGA-22-1012-01A	NEURL	chr10	105254229	+	PDCD11	chr10	105165742	+
intron-intron	ENST00000465048	ENST00000490787		TCGA	RV	LUSC	TCGA-22-1012-01A	NEURL	chr10	105254229	+	PDCD11	chr10	105165742	+
In-frame	ENST00000374820	ENST00000336325		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
In-frame	ENST00000374820	ENST00000360596		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
In-frame	ENST00000374820	ENST00000253382		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
5CDS-intron	ENST00000374820	ENST00000476922		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000452740	ENST00000336325		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000452740	ENST00000360596		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000452740	ENST00000253382		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
5CDS-intron	ENST00000452740	ENST00000476922		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
intron-3CDS	ENST00000480175	ENST00000336325		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
intron-3CDS	ENST00000480175	ENST00000360596		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
intron-3CDS	ENST00000480175	ENST00000253382		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
intron-intron	ENST00000480175	ENST00000476922		TCGA	RV	LUSC	TCGA-56-8201-01A	PIGU	chr20	33225680	-	ACSS2	chr20	33500899	+
Frame-shit	ENST00000264977	ENST00000310546		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000264977	ENST00000507895		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
Frame-shit	ENST00000490467	ENST00000310546		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000490467	ENST00000507895		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
Frame-shit	ENST00000334546	ENST00000310546		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
5CDS-3UTR	ENST00000334546	ENST00000507895		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
intron-3CDS	ENST00000492624	ENST00000310546		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
intron-3UTR	ENST00000492624	ENST00000507895		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
3UTR-3CDS	ENST00000469270	ENST00000310546		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
3UTR-3UTR	ENST00000469270	ENST00000507895		TCGA	RV	LUSC	TCGA-52-7810-01A	PPP2R3A	chr3	135822218	+	SPSB4	chr3	140865984	+
intron-3CDS	ENST00000262305	ENST00000397770		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000262305	ENST00000316163		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000262305	ENST00000359740		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000262305	ENST00000397768		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-5UTR	ENST00000262305	ENST00000431291		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
Frame-shit	ENST00000457159	ENST00000397770		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
Frame-shit	ENST00000457159	ENST00000316163		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
Frame-shit	ENST00000457159	ENST00000359740		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
Frame-shit	ENST00000457159	ENST00000397768		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
5CDS-5UTR	ENST00000457159	ENST00000431291		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000450428	ENST00000397770		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000450428	ENST00000316163		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000450428	ENST00000359740		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-3CDS	ENST00000450428	ENST00000397768		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
intron-5UTR	ENST00000450428	ENST00000431291		TCGA	RV	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325333	-
5UTR-3CDS	ENST00000533486	ENST00000529689		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-3CDS	ENST00000533486	ENST00000455220		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000533486	ENST00000525504		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000533486	ENST00000525503		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000533486	ENST00000529611		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000533486	ENST00000529073		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-3CDS	ENST00000534141	ENST00000529689		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-3CDS	ENST00000534141	ENST00000455220		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000534141	ENST00000525504		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000534141	ENST00000525503		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000534141	ENST00000529611		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000534141	ENST00000529073		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-3CDS	ENST00000260056	ENST00000529689		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-3CDS	ENST00000260056	ENST00000455220		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000260056	ENST00000525504		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000260056	ENST00000525503		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000260056	ENST00000529611		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000260056	ENST00000529073		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-3CDS	ENST00000527633	ENST00000529689		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-3CDS	ENST00000527633	ENST00000455220		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000527633	ENST00000525504		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000527633	ENST00000525503		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000527633	ENST00000529611		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5UTR-5UTR	ENST00000527633	ENST00000529073		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-3CDS	ENST00000525117	ENST00000529689		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-3CDS	ENST00000525117	ENST00000455220		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000525117	ENST00000525504		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000525117	ENST00000525503		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000525117	ENST00000529611		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000525117	ENST00000529073		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-3CDS	ENST00000532548	ENST00000529689		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-3CDS	ENST00000532548	ENST00000455220		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000532548	ENST00000525504		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000532548	ENST00000525503		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000532548	ENST00000529611		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
intron-5UTR	ENST00000532548	ENST00000529073		TCGA	RV	LUSC	TCGA-63-A5MW-01A	RAB30	chr11	82782733	-	CCDC90B	chr11	82977021	-
5CDS-3UTR	ENST00000327155	ENST00000418066		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000327155	ENST00000409920		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000327155	ENST00000394295		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000327155	ENST00000536030		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000399722	ENST00000418066		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000399722	ENST00000409920		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000399722	ENST00000394295		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000399722	ENST00000536030		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000399725	ENST00000418066		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000399725	ENST00000409920		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000399725	ENST00000394295		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000399725	ENST00000536030		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000360790	ENST00000418066		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000360790	ENST00000409920		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000360790	ENST00000394295		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000360790	ENST00000536030		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
intron-3UTR	ENST00000581687	ENST00000418066		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000581687	ENST00000409920		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000581687	ENST00000394295		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000581687	ENST00000536030		TCGA	RV	LUSC	TCGA-60-2715-01A	RBBP8	chr18	20529676	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000399300	ENST00000517939		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000399300	ENST00000517781		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000399300	ENST00000378439		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000399300	ENST00000276659		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-5UTR	ENST00000517700	ENST00000517939		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000517700	ENST00000517781		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000517700	ENST00000378439		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000517700	ENST00000276659		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-5UTR	ENST00000520961	ENST00000517939		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000520961	ENST00000517781		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000520961	ENST00000378439		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
intron-intron	ENST00000520961	ENST00000276659		TCGA	RV	LUSC	TCGA-60-2706-01A	RBM12B	chr8	94752857	-	RSPO2	chr8	109001472	-
Frame-shit	ENST00000357387	ENST00000351578		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000357387	ENST00000515010		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000357387	ENST00000505428		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000357387	ENST00000512982		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000357387	ENST00000540520		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
5CDS-intron	ENST00000357387	ENST00000503065		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000296782	ENST00000351578		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000296782	ENST00000515010		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000296782	ENST00000505428		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000296782	ENST00000512982		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
Frame-shit	ENST00000296782	ENST00000540520		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
5CDS-intron	ENST00000296782	ENST00000503065		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
intron-3CDS	ENST00000503698	ENST00000351578		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
intron-3CDS	ENST00000503698	ENST00000515010		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
intron-3CDS	ENST00000503698	ENST00000505428		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
intron-3CDS	ENST00000503698	ENST00000512982		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
intron-3CDS	ENST00000503698	ENST00000540520		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
intron-intron	ENST00000503698	ENST00000503065		TCGA	RV	LUSC	TCGA-18-3419-01A	RICTOR	chr5	39074213	-	FYB	chr5	39141243	-
5UTR-intron	ENST00000242059	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000242059	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000242059	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000426154	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000426154	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000426154	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000425819	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000425819	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000425819	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000434476	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000434476	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000434476	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000494620	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000494620	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000494620	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000409570	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000409570	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
5UTR-intron	ENST00000409570	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000409497	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000409497	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000409497	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000416113	ENST00000409123		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000416113	ENST00000242140		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
intron-intron	ENST00000416113	ENST00000409290		TCGA	RV	LUSC	TCGA-22-A5C4-01A	SCRN1	chr7	30029258	-	WIPF3	chr7	29954109	+
Frame-shit	ENST00000370010	ENST00000521072		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000370010	ENST00000424445		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000370010	ENST00000440797		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
5CDS-intron	ENST00000370010	ENST00000524031		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000370014	ENST00000521072		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000370014	ENST00000424445		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000370014	ENST00000440797		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
5CDS-intron	ENST00000370014	ENST00000524031		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000447266	ENST00000521072		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000447266	ENST00000424445		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000447266	ENST00000440797		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
5CDS-intron	ENST00000447266	ENST00000524031		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000541192	ENST00000521072		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000541192	ENST00000424445		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
Frame-shit	ENST00000541192	ENST00000440797		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
5CDS-intron	ENST00000541192	ENST00000524031		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-3CDS	ENST00000327284	ENST00000521072		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-3CDS	ENST00000327284	ENST00000424445		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-3CDS	ENST00000327284	ENST00000440797		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-intron	ENST00000327284	ENST00000524031		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-3CDS	ENST00000436928	ENST00000521072		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-3CDS	ENST00000436928	ENST00000424445		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-3CDS	ENST00000436928	ENST00000440797		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
intron-intron	ENST00000436928	ENST00000524031		TCGA	RV	LUSC	TCGA-52-7810-01A	SENP6	chr6	76407233	+	PPIL6	chr6	109752548	-
In-frame	ENST00000377387	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000377387	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000377387	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000377390	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000377390	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000377390	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000377394	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000377394	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000377394	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000227503	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000227503	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000227503	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000334944	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
In-frame	ENST00000334944	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000334944	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5UTR-3CDS	ENST00000422298	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5UTR-3CDS	ENST00000422298	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5UTR-intron	ENST00000422298	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
Frame-shit	ENST00000433274	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
Frame-shit	ENST00000433274	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
5CDS-intron	ENST00000433274	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
intron-3CDS	ENST00000489544	ENST00000320631		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
intron-3CDS	ENST00000489544	ENST00000359393		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
intron-intron	ENST00000489544	ENST00000488711		TCGA	RV	LUSC	TCGA-43-A56U-01A	SF1	chr11	64543970	-	EHD1	chr11	64627808	-
intron-3CDS	ENST00000449833	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449833	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449833	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449833	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449833	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449833	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-intron	ENST00000449833	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-3CDS	ENST00000409161	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409161	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409161	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409161	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409161	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409161	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-intron	ENST00000409161	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
In-frame	ENST00000423696	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000423696	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000423696	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000423696	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000423696	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000423696	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-intron	ENST00000423696	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
In-frame	ENST00000338508	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000338508	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000338508	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000338508	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000338508	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-5UTR	ENST00000338508	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5CDS-intron	ENST00000338508	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-3CDS	ENST00000409530	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409530	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409530	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409530	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409530	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000409530	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-intron	ENST00000409530	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-3CDS	ENST00000449116	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449116	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449116	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449116	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449116	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000449116	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-intron	ENST00000449116	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-3CDS	ENST00000357171	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000357171	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000357171	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000357171	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000357171	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-5UTR	ENST00000357171	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
intron-intron	ENST00000357171	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-3CDS	ENST00000468619	ENST00000378618		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-5UTR	ENST00000468619	ENST00000536126		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-5UTR	ENST00000468619	ENST00000278460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-5UTR	ENST00000468619	ENST00000395460		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-5UTR	ENST00000468619	ENST00000378615		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-5UTR	ENST00000468619	ENST00000543718		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
5UTR-intron	ENST00000468619	ENST00000527268		TCGA	RV	LUSC	TCGA-43-6771-01A	SHANK2	chr11	70644548	-	C11orf49	chr11	47008759	+
Frame-shit	ENST00000359271	ENST00000336325		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
Frame-shit	ENST00000359271	ENST00000360596		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
Frame-shit	ENST00000359271	ENST00000253382		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
5CDS-intron	ENST00000359271	ENST00000476922		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
3UTR-3CDS	ENST00000486000	ENST00000336325		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
3UTR-3CDS	ENST00000486000	ENST00000360596		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
3UTR-3CDS	ENST00000486000	ENST00000253382		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
3UTR-intron	ENST00000486000	ENST00000476922		TCGA	RV	LUSC	TCGA-85-8664-01A	SLC2A10	chr20	45338379	+	ACSS2	chr20	33500899	+
5UTR-5UTR	ENST00000169298	ENST00000424280		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-5UTR	ENST00000169298	ENST00000338733		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-intron	ENST00000169298	ENST00000446782		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-intron	ENST00000169298	ENST00000479590		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-5UTR	ENST00000457772	ENST00000424280		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-5UTR	ENST00000457772	ENST00000338733		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-intron	ENST00000457772	ENST00000446782		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5UTR-intron	ENST00000457772	ENST00000479590		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-5UTR	ENST00000448044	ENST00000424280		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-5UTR	ENST00000448044	ENST00000338733		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-intron	ENST00000448044	ENST00000446782		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-intron	ENST00000448044	ENST00000479590		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-5UTR	ENST00000487031	ENST00000424280		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-5UTR	ENST00000487031	ENST00000338733		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-intron	ENST00000487031	ENST00000446782		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
intron-intron	ENST00000487031	ENST00000479590		TCGA	RV	LUSC	TCGA-34-5241-01A	ST6GAL1	chr3	186681714	+	TBCCD1	chr3	186282161	-
5CDS-5UTR	ENST00000358794	ENST00000393958		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000358794	ENST00000393960		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000358794	ENST00000355677		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000358794	ENST00000524491		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000358794	ENST00000529047		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000358794	ENST00000393955		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000358794	ENST00000528224		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000305218	ENST00000393958		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000305218	ENST00000393960		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000305218	ENST00000355677		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000305218	ENST00000524491		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000305218	ENST00000529047		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000305218	ENST00000393955		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000305218	ENST00000528224		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000538945	ENST00000393958		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000538945	ENST00000393960		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000538945	ENST00000355677		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-5UTR	ENST00000538945	ENST00000524491		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000538945	ENST00000529047		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000538945	ENST00000393955		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
5CDS-intron	ENST00000538945	ENST00000528224		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000543847	ENST00000393958		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000543847	ENST00000393960		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000543847	ENST00000355677		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000543847	ENST00000524491		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-intron	ENST00000543847	ENST00000529047		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-intron	ENST00000543847	ENST00000393955		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-intron	ENST00000543847	ENST00000528224		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000540501	ENST00000393958		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000540501	ENST00000393960		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000540501	ENST00000355677		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-5UTR	ENST00000540501	ENST00000524491		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-intron	ENST00000540501	ENST00000529047		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-intron	ENST00000540501	ENST00000393955		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
intron-intron	ENST00000540501	ENST00000528224		TCGA	RV	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66719939	-
In-frame	ENST00000263918	ENST00000233099		TCGA	RV	LUSC	TCGA-94-8491-01A	STRN	chr2	37096697	-	HEATR5B	chr2	37208937	-
In-frame	ENST00000263918	ENST00000354531		TCGA	RV	LUSC	TCGA-94-8491-01A	STRN	chr2	37096697	-	HEATR5B	chr2	37208937	-
In-frame	ENST00000379213	ENST00000233099		TCGA	RV	LUSC	TCGA-94-8491-01A	STRN	chr2	37096697	-	HEATR5B	chr2	37208937	-
In-frame	ENST00000379213	ENST00000354531		TCGA	RV	LUSC	TCGA-94-8491-01A	STRN	chr2	37096697	-	HEATR5B	chr2	37208937	-
Frame-shit	ENST00000215742	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000215742	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
5CDS-intron	ENST00000215742	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
5CDS-intron	ENST00000215742	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
5CDS-intron	ENST00000215742	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000399133	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
5CDS-intron	ENST00000399133	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
5CDS-intron	ENST00000399133	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
5CDS-intron	ENST00000399133	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THAP7	chr22	21354936	-	NRG1	chr8	32453346	+
Frame-shit	ENST00000230461	ENST00000393004		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
5CDS-intron	ENST00000230461	ENST00000237172		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
5CDS-intron	ENST00000230461	ENST00000498523		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
5CDS-intron	ENST00000230461	ENST00000370020		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
intron-3CDS	ENST00000370050	ENST00000393004		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
intron-intron	ENST00000370050	ENST00000237172		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
intron-intron	ENST00000370050	ENST00000498523		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
intron-intron	ENST00000370050	ENST00000370020		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
Frame-shit	ENST00000475111	ENST00000393004		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
5CDS-intron	ENST00000475111	ENST00000237172		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
5CDS-intron	ENST00000475111	ENST00000498523		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
5CDS-intron	ENST00000475111	ENST00000370020		TCGA	RV	LUSC	TCGA-22-5491-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76005666	-
In-frame	ENST00000511725	ENST00000378004		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000511725	ENST00000274498		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
5CDS-intron	ENST00000511725	ENST00000486650		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000253815	ENST00000378004		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000253815	ENST00000274498		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
5CDS-intron	ENST00000253815	ENST00000486650		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000398733	ENST00000378004		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000398733	ENST00000274498		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
5CDS-intron	ENST00000398733	ENST00000486650		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000505548	ENST00000378004		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
In-frame	ENST00000505548	ENST00000274498		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
5CDS-intron	ENST00000505548	ENST00000486650		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	UBE2D2	chr5	138994551	+	ARHGAP26	chr5	142434004	+
intron-5UTR	ENST00000497914	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000497914	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000497914	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000497914	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000497914	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000223341	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000223341	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000223341	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000223341	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000223341	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000336086	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000336086	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000336086	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000336086	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000336086	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000402306	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000402306	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000402306	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000402306	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000402306	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000443736	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000443736	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000443736	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000443736	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000443736	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000453200	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000453200	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000453200	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000453200	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000453200	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
5UTR-5UTR	ENST00000447717	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
5UTR-5UTR	ENST00000447717	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
5UTR-5UTR	ENST00000447717	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
5UTR-3UTR	ENST00000447717	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
5UTR-5UTR	ENST00000447717	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000446958	ENST00000331803		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000446958	ENST00000341253		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000446958	ENST00000395564		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-3UTR	ENST00000446958	ENST00000482015		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
intron-5UTR	ENST00000446958	ENST00000429491		TCGA	RV	LUSC	TCGA-O2-A52N-01A	URGCP	chr7	43965731	-	UPP1	chr7	48134360	+
5CDS-intron	ENST00000300896	ENST00000458129		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
5CDS-intron	ENST00000300896	ENST00000275815		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
intron-intron	ENST00000592339	ENST00000458129		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
intron-intron	ENST00000592339	ENST00000275815		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
5CDS-intron	ENST00000393003	ENST00000458129		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
5CDS-intron	ENST00000393003	ENST00000275815		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
intron-intron	ENST00000586881	ENST00000458129		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
intron-intron	ENST00000586881	ENST00000275815		TCGA	RV	LUSC	TCGA-22-5481-01A	USP32	chr17	58469243	-	EPHA1	chr7	143094750	-
In-frame	ENST00000262577	ENST00000320476		TCGA	RV	LUSC	TCGA-85-8580-01A	ZC3H3	chr8	144547887	-	SCRIB	chr8	144889183	-
In-frame	ENST00000262577	ENST00000356994		TCGA	RV	LUSC	TCGA-85-8580-01A	ZC3H3	chr8	144547887	-	SCRIB	chr8	144889183	-
In-frame	ENST00000262577	ENST00000377533		TCGA	RV	LUSC	TCGA-85-8580-01A	ZC3H3	chr8	144547887	-	SCRIB	chr8	144889183	-
5CDS-intron	ENST00000262577	ENST00000546337		TCGA	RV	LUSC	TCGA-85-8580-01A	ZC3H3	chr8	144547887	-	SCRIB	chr8	144889183	-
Frame-shit	ENST00000293771	ENST00000589123		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-intron	ENST00000293771	ENST00000346156		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-intron	ENST00000293771	ENST00000395111		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-intron	ENST00000293771	ENST00000586919		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-intron	ENST00000293771	ENST00000341919		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-intron	ENST00000293771	ENST00000590282		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-intron	ENST00000293771	ENST00000443272		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
5CDS-3UTR	ENST00000293771	ENST00000588839		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-3CDS	ENST00000593191	ENST00000589123		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-intron	ENST00000593191	ENST00000346156		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-intron	ENST00000593191	ENST00000395111		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-intron	ENST00000593191	ENST00000586919		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-intron	ENST00000593191	ENST00000341919		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-intron	ENST00000593191	ENST00000590282		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-intron	ENST00000593191	ENST00000443272		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
intron-3UTR	ENST00000593191	ENST00000588839		TCGA	RV	LUSC	TCGA-39-5019-01A	ZNF653	chr19	11616303	-	NFIC	chr19	3425104	+
In-frame	ENST00000376542	ENST00000354981		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000376542	ENST00000378003		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000376542	ENST00000355755		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000376542	ENST00000408042		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
In-frame	ENST00000339157	ENST00000354981		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000339157	ENST00000378003		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000339157	ENST00000355755		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000339157	ENST00000408042		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
intron-3CDS	ENST00000481556	ENST00000354981		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000481556	ENST00000378003		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000481556	ENST00000355755		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000481556	ENST00000408042		TCGA	RV	LUSC	TCGA-77-7142-01A	ABHD12	chr20	25282855	-	KIF16B	chr20	16509085	-
intron-3CDS	ENST00000360265	ENST00000361737		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000545242		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000546334		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000296372		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000318888		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000514025		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000447017		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000361581		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000341937		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000407564		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000505872		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000360265	ENST00000428004		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-intron	ENST00000360265	ENST00000515079		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000361737		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000545242		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000546334		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000296372		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000318888		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000514025		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000447017		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000361581		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000341937		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000407564		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000505872		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000358461	ENST00000428004		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-intron	ENST00000358461	ENST00000515079		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000361737		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000545242		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000546334		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000296372		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000318888		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000514025		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000447017		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000361581		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000341937		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000407564		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000505872		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-3CDS	ENST00000420658	ENST00000428004		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
5UTR-intron	ENST00000420658	ENST00000515079		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000361737		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000545242		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000546334		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000296372		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000318888		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000514025		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000447017		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000361581		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000341937		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000407564		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000505872		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000382543	ENST00000428004		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-intron	ENST00000382543	ENST00000515079		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000361737		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000545242		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000546334		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000296372		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000318888		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000514025		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000447017		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000361581		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000341937		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000407564		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000505872		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-3CDS	ENST00000513842	ENST00000428004		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
intron-intron	ENST00000513842	ENST00000515079		TCGA	RV	LUSC	TCGA-77-A5GH-01A	AFAP1	chr4	7941383	-	ABLIM2	chr4	8010829	-
In-frame	ENST00000358502	ENST00000361658		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
In-frame	ENST00000358502	ENST00000395544		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
5CDS-intron	ENST00000358502	ENST00000580130		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
Frame-shit	ENST00000249066	ENST00000361658		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
Frame-shit	ENST00000249066	ENST00000395544		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
5CDS-intron	ENST00000249066	ENST00000580130		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
Frame-shit	ENST00000451256	ENST00000361658		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
Frame-shit	ENST00000451256	ENST00000395544		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
5CDS-intron	ENST00000451256	ENST00000580130		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
intron-3CDS	ENST00000476579	ENST00000361658		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
intron-3CDS	ENST00000476579	ENST00000395544		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
intron-intron	ENST00000476579	ENST00000580130		TCGA	RV	LUSC	TCGA-33-6737-01A	APOL2	chr22	36627386	-	ULK2	chr17	19729499	-
5CDS-intron	ENST00000334344	ENST00000523102		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000334344	ENST00000524270		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000334344	ENST00000519357		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000334344	ENST00000437851		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5UTR-intron	ENST00000422737	ENST00000523102		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5UTR-intron	ENST00000422737	ENST00000524270		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5UTR-intron	ENST00000422737	ENST00000519357		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
5UTR-5UTR	ENST00000422737	ENST00000437851		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000479608	ENST00000523102		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000479608	ENST00000524270		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000479608	ENST00000519357		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000479608	ENST00000437851		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000444670	ENST00000523102		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000444670	ENST00000524270		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000444670	ENST00000519357		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000444670	ENST00000437851		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000457135	ENST00000523102		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000457135	ENST00000524270		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-intron	ENST00000457135	ENST00000519357		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000457135	ENST00000437851		TCGA	RV	LUSC	TCGA-94-7943-01A	ARID2	chr12	46205334	+	SPSB2	chr12	6991451	-
Frame-shit	ENST00000343245	ENST00000367121		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000343245	ENST00000367122		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000343245	ENST00000355585		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-intron	ENST00000343245	ENST00000449859		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-5UTR	ENST00000343245	ENST00000367112		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000369070	ENST00000367121		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000369070	ENST00000367122		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000369070	ENST00000355585		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-intron	ENST00000369070	ENST00000449859		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-5UTR	ENST00000369070	ENST00000367112		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
In-frame	ENST00000369076	ENST00000367121		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
In-frame	ENST00000369076	ENST00000367122		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
In-frame	ENST00000369076	ENST00000355585		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-intron	ENST00000369076	ENST00000449859		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-5UTR	ENST00000369076	ENST00000367112		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000360666	ENST00000367121		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000360666	ENST00000367122		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
Frame-shit	ENST00000360666	ENST00000355585		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-intron	ENST00000360666	ENST00000449859		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
5CDS-5UTR	ENST00000360666	ENST00000367112		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
intron-3CDS	ENST00000475645	ENST00000367121		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
intron-3CDS	ENST00000475645	ENST00000367122		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
intron-3CDS	ENST00000475645	ENST00000355585		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
intron-intron	ENST00000475645	ENST00000449859		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
intron-5UTR	ENST00000475645	ENST00000367112		TCGA	RV	LUSC	TCGA-66-2788-01A	ATG5	chr6	106763976	-	SYNJ2	chr6	158502141	+
In-frame	ENST00000308664	ENST00000330386		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000308664	ENST00000389561		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000308664	ENST00000333577		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000308664	ENST00000332482		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000308664	ENST00000389562		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000395494	ENST00000330386		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000395494	ENST00000389561		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000395494	ENST00000333577		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000395494	ENST00000332482		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000395494	ENST00000389562		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000539276	ENST00000330386		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000539276	ENST00000389561		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000539276	ENST00000333577		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000539276	ENST00000332482		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
In-frame	ENST00000539276	ENST00000389562		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
intron-3CDS	ENST00000550248	ENST00000330386		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
intron-3CDS	ENST00000550248	ENST00000389561		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
intron-3CDS	ENST00000550248	ENST00000333577		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
intron-3CDS	ENST00000550248	ENST00000332482		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
intron-3CDS	ENST00000550248	ENST00000389562		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
Frame-shit	ENST00000552636	ENST00000330386		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
Frame-shit	ENST00000552636	ENST00000389561		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
Frame-shit	ENST00000552636	ENST00000333577		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
Frame-shit	ENST00000552636	ENST00000332482		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
Frame-shit	ENST00000552636	ENST00000389562		TCGA	RV	LUSC	TCGA-34-5232-01A	ATP2A2	chr12	110729929	+	EP400	chr12	132464242	+
intron-5UTR	ENST00000535206	ENST00000544237		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
intron-3UTR	ENST00000535206	ENST00000476115		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000535206	ENST00000242315		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000379731	ENST00000544237		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000379731	ENST00000476115		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000379731	ENST00000242315		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000541851	ENST00000544237		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000541851	ENST00000476115		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000541851	ENST00000242315		TCGA	RV	LUSC	TCGA-46-3765-01A	B4GALT1	chr9	33120417	-	KIAA1045	chr9	34971292	+
5UTR-3CDS	ENST00000598463	ENST00000270594		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000598463	ENST00000270593		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000345523	ENST00000270594		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000345523	ENST00000270593		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000391812	ENST00000270594		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000391812	ENST00000270593		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
intron-3CDS	ENST00000596655	ENST00000270594		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
intron-3CDS	ENST00000596655	ENST00000270593		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000595794	ENST00000270594		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5UTR-3CDS	ENST00000595794	ENST00000270593		TCGA	RV	LUSC	TCGA-21-1081-01A	C19orf48	chr19	51302551	-	ACPT	chr19	51297145	+
5CDS-intron	ENST00000374706	ENST00000435344		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000374706	ENST00000477737		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000374706	ENST00000451075		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-3UTR	ENST00000374706	ENST00000490947		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000265375	ENST00000435344		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000265375	ENST00000477737		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000265375	ENST00000451075		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-3UTR	ENST00000265375	ENST00000490947		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000339497	ENST00000435344		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000339497	ENST00000477737		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000339497	ENST00000451075		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-3UTR	ENST00000339497	ENST00000490947		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000374704	ENST00000435344		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000374704	ENST00000477737		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000374704	ENST00000451075		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-3UTR	ENST00000374704	ENST00000490947		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
3UTR-intron	ENST00000492478	ENST00000435344		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
3UTR-intron	ENST00000492478	ENST00000477737		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
3UTR-intron	ENST00000492478	ENST00000451075		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
3UTR-3UTR	ENST00000492478	ENST00000490947		TCGA	RV	LUSC	TCGA-22-A5C4-01A	CCNY	chr10	35790463	+	VWA3B	chr2	98906974	+
5CDS-intron	ENST00000307365	ENST00000233057		TCGA	RV	LUSC	TCGA-34-5241-01A	DDIT4	chr10	74035794	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000307365	ENST00000395127		TCGA	RV	LUSC	TCGA-34-5241-01A	DDIT4	chr10	74035794	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000307365	ENST00000405334		TCGA	RV	LUSC	TCGA-34-5241-01A	DDIT4	chr10	74035794	+	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000284061	ENST00000268933		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
5CDS-intron	ENST00000284061	ENST00000515028		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
5CDS-intron	ENST00000284061	ENST00000541226		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
5CDS-intron	ENST00000284061	ENST00000537145		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
3UTR-3CDS	ENST00000576869	ENST00000268933		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
3UTR-intron	ENST00000576869	ENST00000515028		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
3UTR-intron	ENST00000576869	ENST00000541226		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
3UTR-intron	ENST00000576869	ENST00000537145		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
Frame-shit	ENST00000572810	ENST00000268933		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
5CDS-intron	ENST00000572810	ENST00000515028		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
5CDS-intron	ENST00000572810	ENST00000541226		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
5CDS-intron	ENST00000572810	ENST00000537145		TCGA	RV	LUSC	TCGA-43-2581-01A	DGKE	chr17	54912620	+	EPN3	chr17	48618154	+
intron-3CDS	ENST00000559088	ENST00000298717		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
intron-3UTR	ENST00000559088	ENST00000538267		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
intron-intron	ENST00000559088	ENST00000545319		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
In-frame	ENST00000288111	ENST00000298717		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
5CDS-3UTR	ENST00000288111	ENST00000538267		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
5CDS-intron	ENST00000288111	ENST00000545319		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
Frame-shit	ENST00000396813	ENST00000298717		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
5CDS-3UTR	ENST00000396813	ENST00000538267		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
5CDS-intron	ENST00000396813	ENST00000545319		TCGA	RV	LUSC	TCGA-39-5019-01A	DHRS1	chr14	24768163	-	METTL3	chr14	21970045	-
5CDS-intron	ENST00000521913	ENST00000380629		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000521913	ENST00000523515		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000521913	ENST00000520409		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000521913	ENST00000518611		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000521913	ENST00000521254		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000311151	ENST00000380629		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000311151	ENST00000523515		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000311151	ENST00000520409		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000311151	ENST00000518611		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000311151	ENST00000521254		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523027	ENST00000380629		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523027	ENST00000523515		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523027	ENST00000520409		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523027	ENST00000518611		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523027	ENST00000521254		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521983	ENST00000380629		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521983	ENST00000523515		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521983	ENST00000520409		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521983	ENST00000518611		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000521983	ENST00000521254		TCGA	RV	LUSC	TCGA-96-A4JK-01A	DPYSL2	chr8	26441499	+	BNIP3L	chr8	26362823	+
Frame-shit	ENST00000396153	ENST00000371714		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000371710		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000337809		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000435686		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000447887		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000453295		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000428468		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000530544		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000531828		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
Frame-shit	ENST00000396153	ENST00000361556		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000396153	ENST00000473207		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000396153	ENST00000462759		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000396153	ENST00000486942		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000371714		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000371710		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000337809		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000435686		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000447887		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000453295		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000428468		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000530544		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000531828		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
In-frame	ENST00000371778	ENST00000361556		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000371778	ENST00000473207		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000371778	ENST00000462759		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000371778	ENST00000486942		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000371714		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000371710		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000337809		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000435686		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000447887		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000453295		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000428468		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000530544		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000531828		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000545823	ENST00000361556		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-intron	ENST00000545823	ENST00000473207		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-intron	ENST00000545823	ENST00000462759		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-intron	ENST00000545823	ENST00000486942		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000371714		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000371710		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000337809		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000435686		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000447887		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000453295		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000428468		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000530544		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000531828		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-3CDS	ENST00000472808	ENST00000361556		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-intron	ENST00000472808	ENST00000473207		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-intron	ENST00000472808	ENST00000462759		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
intron-intron	ENST00000472808	ENST00000486942		TCGA	RV	LUSC	TCGA-85-8355-01A	FAF1	chr1	51425439	-	OSBPL9	chr1	52231494	+
5CDS-intron	ENST00000257209	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000257209	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000257209	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-5UTR	ENST00000257209	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000445677	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000445677	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000445677	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-5UTR	ENST00000445677	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000590592	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000590592	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000590592	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-5UTR	ENST00000590592	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000359247	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000359247	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-intron	ENST00000359247	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
5CDS-5UTR	ENST00000359247	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000591635	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000591635	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000591635	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-5UTR	ENST00000591635	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000592128	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000592128	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000592128	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-5UTR	ENST00000592128	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000587493	ENST00000586725		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000587493	ENST00000269195		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-intron	ENST00000587493	ENST00000591081		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
intron-5UTR	ENST00000587493	ENST00000537549		TCGA	RV	LUSC	TCGA-63-A5MR-01A	FHOD3	chr18	33877963	+	GALNT1	chr18	33243592	+
In-frame	ENST00000379561	ENST00000442101		TCGA	RV	LUSC	TCGA-60-2706-01A	FOXO1	chr13	41239720	-	ELF1	chr13	41533152	-
5CDS-5UTR	ENST00000379561	ENST00000498824		TCGA	RV	LUSC	TCGA-60-2706-01A	FOXO1	chr13	41239720	-	ELF1	chr13	41533152	-
5CDS-5UTR	ENST00000379561	ENST00000239882		TCGA	RV	LUSC	TCGA-60-2706-01A	FOXO1	chr13	41239720	-	ELF1	chr13	41533152	-
intron-3CDS	ENST00000473775	ENST00000442101		TCGA	RV	LUSC	TCGA-60-2706-01A	FOXO1	chr13	41239720	-	ELF1	chr13	41533152	-
intron-5UTR	ENST00000473775	ENST00000498824		TCGA	RV	LUSC	TCGA-60-2706-01A	FOXO1	chr13	41239720	-	ELF1	chr13	41533152	-
intron-5UTR	ENST00000473775	ENST00000239882		TCGA	RV	LUSC	TCGA-60-2706-01A	FOXO1	chr13	41239720	-	ELF1	chr13	41533152	-
Frame-shit	ENST00000300648	ENST00000261254		TCGA	RV	LUSC	TCGA-22-1017-01A	GCN1L1	chr12	120600651	-	CCND2	chr12	4398008	+
5CDS-intron	ENST00000300648	ENST00000541542		TCGA	RV	LUSC	TCGA-22-1017-01A	GCN1L1	chr12	120600651	-	CCND2	chr12	4398008	+
5CDS-intron	ENST00000373823	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373823	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373823	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373808	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373808	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373808	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000436847	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000436847	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000436847	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000449733	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000449733	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000449733	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000412819	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000412819	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000412819	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000394353	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000394353	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000394353	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000341272	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000341272	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000341272	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000545652	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000545652	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000545652	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373818	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373818	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000373818	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000485767	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000485767	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000485767	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000373807	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000373807	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000373807	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000373806	ENST00000367545		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000373806	ENST00000367526		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
intron-intron	ENST00000373806	ENST00000480333		TCGA	RV	LUSC	TCGA-21-1076-01A	GSN	chr9	124095120	+	UTRN	chr6	144665237	+
5CDS-5UTR	ENST00000288135	ENST00000264485		TCGA	RV	LUSC	TCGA-85-8287-01A	KIT	chr4	55599358	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000288135	ENST00000425175		TCGA	RV	LUSC	TCGA-85-8287-01A	KIT	chr4	55599358	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000288135	ENST00000351898		TCGA	RV	LUSC	TCGA-85-8287-01A	KIT	chr4	55599358	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000288135	ENST00000340595		TCGA	RV	LUSC	TCGA-85-8287-01A	KIT	chr4	55599358	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000288135	ENST00000514331		TCGA	RV	LUSC	TCGA-85-8287-01A	KIT	chr4	55599358	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000288135	ENST00000512686		TCGA	RV	LUSC	TCGA-85-8287-01A	KIT	chr4	55599358	+	SLC4A4	chr4	72102293	+
In-frame	ENST00000311351	ENST00000317025		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000311351	ENST00000433384		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000311351	ENST00000527502		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000311351	ENST00000316985		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
5CDS-intron	ENST00000311351	ENST00000525081		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000520755	ENST00000317025		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000520755	ENST00000433384		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000520755	ENST00000527502		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
In-frame	ENST00000520755	ENST00000316985		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
5CDS-intron	ENST00000520755	ENST00000525081		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
intron-3CDS	ENST00000522515	ENST00000317025		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
intron-3CDS	ENST00000522515	ENST00000433384		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
intron-3CDS	ENST00000522515	ENST00000527502		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
intron-3CDS	ENST00000522515	ENST00000316985		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
intron-intron	ENST00000522515	ENST00000525081		TCGA	RV	LUSC	TCGA-33-6738-01A	LSM1	chr8	38033793	-	WHSC1L1	chr8	38196125	-
5CDS-5UTR	ENST00000226578	ENST00000513024		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000509638		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000508501		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000512946		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000313860		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000512632		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000512820		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000503057		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000226578	ENST00000511496		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000226578	ENST00000514096		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000226578	ENST00000509277		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000226578	ENST00000396595		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000226578	ENST00000381753		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000226578	ENST00000509454		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000226578	ENST00000515785		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000513024		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000509638		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000508501		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000512946		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000313860		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000512632		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000512820		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000503057		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-5UTR	ENST00000505239	ENST00000511496		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000505239	ENST00000514096		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000505239	ENST00000509277		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000505239	ENST00000396595		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000505239	ENST00000381753		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000505239	ENST00000509454		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-intron	ENST00000505239	ENST00000515785		TCGA	RV	LUSC	TCGA-22-5481-01A	MANBA	chr4	103681875	-	LIMCH1	chr4	41600937	+
5CDS-3UTR	ENST00000013125	ENST00000554438		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5CDS-3UTR	ENST00000013125	ENST00000245448		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5CDS-3UTR	ENST00000013125	ENST00000426751		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5CDS-3UTR	ENST00000013125	ENST00000311459		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5CDS-intron	ENST00000013125	ENST00000358473		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5UTR-3UTR	ENST00000557578	ENST00000554438		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5UTR-3UTR	ENST00000557578	ENST00000245448		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5UTR-3UTR	ENST00000557578	ENST00000426751		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5UTR-3UTR	ENST00000557578	ENST00000311459		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
5UTR-intron	ENST00000557578	ENST00000358473		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	MAP4K5	chr14	50941795	-	ATP5S	chr14	50788201	+
In-frame	ENST00000372811	ENST00000533824		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
In-frame	ENST00000372811	ENST00000438567		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
In-frame	ENST00000372811	ENST00000236495		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
5CDS-3UTR	ENST00000372811	ENST00000420136		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
5CDS-intron	ENST00000372811	ENST00000471020		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3CDS	ENST00000420632	ENST00000533824		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3CDS	ENST00000420632	ENST00000438567		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3CDS	ENST00000420632	ENST00000236495		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3UTR	ENST00000420632	ENST00000420136		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-intron	ENST00000420632	ENST00000471020		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
In-frame	ENST00000372809	ENST00000533824		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
In-frame	ENST00000372809	ENST00000438567		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
In-frame	ENST00000372809	ENST00000236495		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
5CDS-3UTR	ENST00000372809	ENST00000420136		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
5CDS-intron	ENST00000372809	ENST00000471020		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3CDS	ENST00000480630	ENST00000533824		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3CDS	ENST00000480630	ENST00000438567		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3CDS	ENST00000480630	ENST00000236495		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-3UTR	ENST00000480630	ENST00000420136		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
intron-intron	ENST00000480630	ENST00000471020		TCGA	RV	LUSC	TCGA-58-8392-01A	MFSD2A	chr1	40424497	+	SLC5A9	chr1	48703351	+
5UTR-3CDS	ENST00000347364	ENST00000246186		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MKKS	chr20	10414756	-	MMP24	chr20	33834643	+
intron-3CDS	ENST00000399054	ENST00000246186		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MKKS	chr20	10414756	-	MMP24	chr20	33834643	+
intron-3CDS	ENST00000609375	ENST00000246186		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MKKS	chr20	10414756	-	MMP24	chr20	33834643	+
In-frame	ENST00000397661	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000397661	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000397661	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000397661	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000397661	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000397661	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
5CDS-intron	ENST00000397661	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000592199	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000592199	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000592199	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000592199	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000592199	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
In-frame	ENST00000592199	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
5CDS-intron	ENST00000592199	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587760	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587760	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587760	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587760	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587760	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587760	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000587760	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000585575	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000585575	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000585575	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000585575	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000585575	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000585575	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000585575	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000360105	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000360105	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000360105	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000360105	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000360105	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000360105	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000360105	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588228	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588228	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588228	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588228	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588228	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588228	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000588228	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587260	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587260	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587260	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587260	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587260	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000587260	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000587260	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000358552	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000358552	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000358552	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000358552	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000358552	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000358552	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000358552	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588680	ENST00000585892		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588680	ENST00000314646		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588680	ENST00000359692		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588680	ENST00000389253		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588680	ENST00000355667		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-3CDS	ENST00000588680	ENST00000408974		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
intron-intron	ENST00000588680	ENST00000591819		TCGA	RV	LUSC	TCGA-34-8456-01A	NFIX	chr19	13106678	+	DNM2	chr19	10897240	+
Frame-shit	ENST00000379540	ENST00000377996		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
Frame-shit	ENST00000379540	ENST00000439587		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
Frame-shit	ENST00000379540	ENST00000377991		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
5CDS-3UTR	ENST00000379540	ENST00000473947		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
5CDS-3UTR	ENST00000379540	ENST00000377988		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
Frame-shit	ENST00000379521	ENST00000377996		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
Frame-shit	ENST00000379521	ENST00000439587		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
Frame-shit	ENST00000379521	ENST00000377991		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
5CDS-3UTR	ENST00000379521	ENST00000473947		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
5CDS-3UTR	ENST00000379521	ENST00000377988		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3CDS	ENST00000318524	ENST00000377996		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3CDS	ENST00000318524	ENST00000439587		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3CDS	ENST00000318524	ENST00000377991		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3UTR	ENST00000318524	ENST00000473947		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3UTR	ENST00000318524	ENST00000377988		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3CDS	ENST00000463421	ENST00000377996		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3CDS	ENST00000463421	ENST00000439587		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3CDS	ENST00000463421	ENST00000377991		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3UTR	ENST00000463421	ENST00000473947		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
intron-3UTR	ENST00000463421	ENST00000377988		TCGA	RV	LUSC	TCGA-22-4604-01A	NFX1	chr9	33354890	+	TMEM8B	chr9	35845972	+
Frame-shit	ENST00000354822	ENST00000555449		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000354822	ENST00000331299		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
5CDS-intron	ENST00000354822	ENST00000557611		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000498187	ENST00000555449		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000498187	ENST00000331299		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
5CDS-intron	ENST00000498187	ENST00000557611		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000518149	ENST00000555449		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000518149	ENST00000331299		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
5CDS-intron	ENST00000518149	ENST00000557611		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000522719	ENST00000555449		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
Frame-shit	ENST00000522719	ENST00000331299		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
5CDS-intron	ENST00000522719	ENST00000557611		TCGA	RV	LUSC	TCGA-39-5034-01A	NKX2-1	chr14	36988190	-	SLC25A21	chr14	37153085	-
5UTR-intron	ENST00000393923	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
5UTR-intron	ENST00000393923	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
5UTR-intron	ENST00000393923	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
5UTR-intron	ENST00000393923	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
5UTR-intron	ENST00000393923	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
5UTR-intron	ENST00000393923	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000412622	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000412622	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000412622	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000412622	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000412622	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000412622	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000431670	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000431670	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000431670	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000431670	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000431670	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000431670	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393925	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393925	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393925	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393925	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393925	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393925	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000481953	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000481953	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000481953	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000481953	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000481953	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000481953	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000495180	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000495180	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000495180	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000495180	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000495180	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000495180	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000478922	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000478922	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000478922	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000478922	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000478922	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000478922	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000477695	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000477695	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000477695	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000477695	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000477695	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000477695	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000470699	ENST00000406091		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000470699	ENST00000262231		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000470699	ENST00000507740		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000470699	ENST00000522174		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000470699	ENST00000436393		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000470699	ENST00000339750		TCGA	RV	LUSC	TCGA-66-2742-01A	PHLDB2	chr3	111451550	+	RIMS2	chr8	105160835	+
Frame-shit	ENST00000264380	ENST00000472531		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000264380	ENST00000491356		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000264380	ENST00000340684		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000264380	ENST00000543802		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
5CDS-5UTR	ENST00000264380	ENST00000491848		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000392202	ENST00000472531		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000392202	ENST00000491356		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000392202	ENST00000340684		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000392202	ENST00000543802		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-5UTR	ENST00000392202	ENST00000491848		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000308862	ENST00000472531		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000308862	ENST00000491356		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000308862	ENST00000340684		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000308862	ENST00000543802		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-5UTR	ENST00000308862	ENST00000491848		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000407449	ENST00000472531		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000407449	ENST00000491356		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000407449	ENST00000340684		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
Frame-shit	ENST00000407449	ENST00000543802		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
5CDS-5UTR	ENST00000407449	ENST00000491848		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000474721	ENST00000472531		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000474721	ENST00000491356		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000474721	ENST00000340684		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000474721	ENST00000543802		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
intron-5UTR	ENST00000474721	ENST00000491848		TCGA	RV	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	ZNF124	chr1	247323115	-
5CDS-intron	ENST00000295874	ENST00000467026		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
5CDS-intron	ENST00000295874	ENST00000397708		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
5CDS-intron	ENST00000295874	ENST00000291688		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
5CDS-intron	ENST00000474889	ENST00000467026		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
5CDS-intron	ENST00000474889	ENST00000397708		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
5CDS-intron	ENST00000474889	ENST00000291688		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
3UTR-intron	ENST00000495879	ENST00000467026		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
3UTR-intron	ENST00000495879	ENST00000397708		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
3UTR-intron	ENST00000495879	ENST00000291688		TCGA	RV	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47703752	-
Frame-shit	ENST00000338086	ENST00000403006		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000338086	ENST00000381090		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000338086	ENST00000237822		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000338086	ENST00000435420		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000338086	ENST00000440866		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000338086	ENST00000541941		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-intron	ENST00000338086	ENST00000419825		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000319801	ENST00000403006		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000319801	ENST00000381090		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000319801	ENST00000237822		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000319801	ENST00000435420		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3UTR	ENST00000319801	ENST00000440866		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3UTR	ENST00000319801	ENST00000541941		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-intron	ENST00000319801	ENST00000419825		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000361078	ENST00000403006		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000361078	ENST00000381090		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000361078	ENST00000237822		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000361078	ENST00000435420		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000361078	ENST00000440866		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000361078	ENST00000541941		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-intron	ENST00000361078	ENST00000419825		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000536417	ENST00000403006		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000536417	ENST00000381090		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000536417	ENST00000237822		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000536417	ENST00000435420		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000536417	ENST00000440866		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000536417	ENST00000541941		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-intron	ENST00000536417	ENST00000419825		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000403432	ENST00000403006		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000403432	ENST00000381090		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
In-frame	ENST00000403432	ENST00000237822		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
Frame-shit	ENST00000403432	ENST00000435420		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000403432	ENST00000440866		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-3UTR	ENST00000403432	ENST00000541941		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-intron	ENST00000403432	ENST00000419825		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000420234	ENST00000403006		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000420234	ENST00000381090		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000420234	ENST00000237822		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3CDS	ENST00000420234	ENST00000435420		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3UTR	ENST00000420234	ENST00000440866		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-3UTR	ENST00000420234	ENST00000541941		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
intron-intron	ENST00000420234	ENST00000419825		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PUM2	chr2	20478344	-	C2orf43	chr2	20886854	-
5CDS-intron	ENST00000452898	ENST00000477496		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000460856		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000240874		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000360013		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000393496		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000291478		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000428018		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000459915		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000452898	ENST00000462213		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000477496		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000460856		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000240874		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000360013		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000393496		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000291478		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000428018		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000459915		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
5CDS-intron	ENST00000286364	ENST00000462213		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000477496		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000460856		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000240874		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000360013		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000393496		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000291478		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000428018		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000459915		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-intron	ENST00000509118	ENST00000462213		TCGA	RV	LUSC	TCGA-85-8277-01A	RASA2	chr3	141206058	+	KALRN	chr3	124017638	+
intron-3CDS	ENST00000342228	ENST00000281708		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000342228	ENST00000603548		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000604872		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000296555		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000263981		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000393956		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000603841		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000604095		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-3CDS	ENST00000520262	ENST00000281708		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-3CDS	ENST00000520262	ENST00000603548		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000520262	ENST00000604872		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000520262	ENST00000296555		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000520262	ENST00000263981		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000520262	ENST00000393956		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000520262	ENST00000603841		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000520262	ENST00000604095		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000520179	ENST00000281708		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000520179	ENST00000603548		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000604872		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000296555		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000263981		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000393956		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000603841		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000604095		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000523340	ENST00000281708		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000523340	ENST00000603548		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000523340	ENST00000604872		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000523340	ENST00000296555		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000523340	ENST00000263981		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000523340	ENST00000393956		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000523340	ENST00000603841		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000523340	ENST00000604095		TCGA	RV	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42358549	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000370155	ENST00000369948		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370155	ENST00000369949		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370155	ENST00000369945		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000465289	ENST00000369948		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000465289	ENST00000369949		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000465289	ENST00000369945		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000427993	ENST00000369948		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000427993	ENST00000369949		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000427993	ENST00000369945		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
Frame-shit	ENST00000370153	ENST00000369948		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
Frame-shit	ENST00000370153	ENST00000369949		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
Frame-shit	ENST00000370153	ENST00000369945		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370156	ENST00000369948		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370156	ENST00000369949		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370156	ENST00000369945		TCGA	RV	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100436200	+	C1orf194	chr1	109649281	-
Frame-shit	ENST00000366601	ENST00000488594		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000366601	ENST00000358966		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000366601	ENST00000282841		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-5UTR	ENST00000366601	ENST00000391855		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000366601	ENST00000489692		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000366601	ENST00000476121		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000406207	ENST00000488594		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000406207	ENST00000358966		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000406207	ENST00000282841		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-5UTR	ENST00000406207	ENST00000391855		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000406207	ENST00000489692		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000406207	ENST00000476121		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000543662	ENST00000488594		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000543662	ENST00000358966		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
Frame-shit	ENST00000543662	ENST00000282841		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-5UTR	ENST00000543662	ENST00000391855		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000543662	ENST00000489692		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
5CDS-intron	ENST00000543662	ENST00000476121		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
intron-3CDS	ENST00000472011	ENST00000488594		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
intron-3CDS	ENST00000472011	ENST00000358966		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
intron-3CDS	ENST00000472011	ENST00000282841		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
intron-5UTR	ENST00000472011	ENST00000391855		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
intron-intron	ENST00000472011	ENST00000489692		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
intron-intron	ENST00000472011	ENST00000476121		TCGA	RV	LUSC	TCGA-37-A5EN-01A	TBCE	chr1	235564902	+	GGPS1	chr1	235505023	+
In-frame	ENST00000433529	ENST00000037869		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000433529	ENST00000450256		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000433529	ENST00000430566		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000415783	ENST00000037869		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000415783	ENST00000450256		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000415783	ENST00000430566		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000282574	ENST00000037869		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000282574	ENST00000450256		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000282574	ENST00000430566		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000445587	ENST00000037869		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000445587	ENST00000450256		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000445587	ENST00000430566		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
intron-3CDS	ENST00000482876	ENST00000037869		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
intron-3CDS	ENST00000482876	ENST00000450256		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
intron-3CDS	ENST00000482876	ENST00000430566		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000416149	ENST00000037869		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000416149	ENST00000450256		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
In-frame	ENST00000416149	ENST00000430566		TCGA	RV	LUSC	TCGA-94-8491-01A	TIA1	chr2	70475537	-	FAM136A	chr2	70528112	-
intron-3CDS	ENST00000432054	ENST00000539563		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000432054	ENST00000490035		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-intron	ENST00000432054	ENST00000498645		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
Frame-shit	ENST00000393238	ENST00000539563		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
Frame-shit	ENST00000393238	ENST00000490035		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
5CDS-intron	ENST00000393238	ENST00000498645		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
Frame-shit	ENST00000426664	ENST00000539563		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
Frame-shit	ENST00000426664	ENST00000490035		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
5CDS-intron	ENST00000426664	ENST00000498645		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000329333	ENST00000539563		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000329333	ENST00000490035		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-intron	ENST00000329333	ENST00000498645		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000515024	ENST00000539563		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-3CDS	ENST00000515024	ENST00000490035		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
intron-intron	ENST00000515024	ENST00000498645		TCGA	RV	LUSC	TCGA-39-5019-01A	TMCC1	chr3	129546646	-	LSAMP	chr3	115805403	-
In-frame	ENST00000283206	ENST00000295408		TCGA	RV	LUSC	TCGA-85-A511-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000421804		TCGA	RV	LUSC	TCGA-85-A511-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
In-frame	ENST00000283206	ENST00000409780		TCGA	RV	LUSC	TCGA-85-A511-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	RV	LUSC	TCGA-85-A511-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	RV	LUSC	TCGA-85-A511-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	RV	LUSC	TCGA-85-A511-01A	TMEM87B	chr2	112813333	+	MERTK	chr2	112751828	+
Frame-shit	ENST00000344204	ENST00000504595		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000344204	ENST00000510662		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000344204	ENST00000329673		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
Frame-shit	ENST00000537187	ENST00000504595		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000537187	ENST00000510662		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000537187	ENST00000329673		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
Frame-shit	ENST00000509967	ENST00000504595		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000509967	ENST00000510662		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000509967	ENST00000329673		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
intron-3CDS	ENST00000515710	ENST00000504595		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
intron-5UTR	ENST00000515710	ENST00000510662		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
intron-5UTR	ENST00000515710	ENST00000329673		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
intron-3CDS	ENST00000344135	ENST00000504595		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
intron-5UTR	ENST00000344135	ENST00000510662		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
intron-5UTR	ENST00000344135	ENST00000329673		TCGA	RV	LUSC	TCGA-46-3765-01A	TRIO	chr5	14391099	+	FBXL7	chr5	15616092	+
In-frame	ENST00000448120	ENST00000304718		TCGA	RV	LUSC	TCGA-34-8456-01A	TULP3	chr12	3043727	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000448120	ENST00000485685		TCGA	RV	LUSC	TCGA-34-8456-01A	TULP3	chr12	3043727	+	GGNBP2	chr17	34937774	+
In-frame	ENST00000397132	ENST00000304718		TCGA	RV	LUSC	TCGA-34-8456-01A	TULP3	chr12	3043727	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000397132	ENST00000485685		TCGA	RV	LUSC	TCGA-34-8456-01A	TULP3	chr12	3043727	+	GGNBP2	chr17	34937774	+
Frame-shit	ENST00000536252	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000536252	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000536252	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
5CDS-intron	ENST00000536252	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
intron-3CDS	ENST00000545103	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
intron-3CDS	ENST00000545103	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
intron-3CDS	ENST00000545103	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
intron-intron	ENST00000545103	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000540348	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000540348	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000540348	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
5CDS-intron	ENST00000540348	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
In-frame	ENST00000543944	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
In-frame	ENST00000543944	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
In-frame	ENST00000543944	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
5CDS-intron	ENST00000543944	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000297661	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000297661	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000297661	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
5CDS-intron	ENST00000297661	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000379186	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000379186	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000379186	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
5CDS-intron	ENST00000379186	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000359544	ENST00000396787		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000359544	ENST00000378495		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
Frame-shit	ENST00000359544	ENST00000378496		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
5CDS-intron	ENST00000359544	ENST00000481299		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	UBAP1	chr9	34220946	+	UNC13B	chr9	35258990	+
In-frame	ENST00000425792	ENST00000361577		TCGA	RV	LUSC	TCGA-21-5787-01A	UBE2E2	chr3	23258803	+	FAM179B	chr14	45512889	+
5CDS-3UTR	ENST00000425792	ENST00000382233		TCGA	RV	LUSC	TCGA-21-5787-01A	UBE2E2	chr3	23258803	+	FAM179B	chr14	45512889	+
5CDS-3UTR	ENST00000425792	ENST00000361462		TCGA	RV	LUSC	TCGA-21-5787-01A	UBE2E2	chr3	23258803	+	FAM179B	chr14	45512889	+
In-frame	ENST00000396703	ENST00000361577		TCGA	RV	LUSC	TCGA-21-5787-01A	UBE2E2	chr3	23258803	+	FAM179B	chr14	45512889	+
5CDS-3UTR	ENST00000396703	ENST00000382233		TCGA	RV	LUSC	TCGA-21-5787-01A	UBE2E2	chr3	23258803	+	FAM179B	chr14	45512889	+
5CDS-3UTR	ENST00000396703	ENST00000361462		TCGA	RV	LUSC	TCGA-21-5787-01A	UBE2E2	chr3	23258803	+	FAM179B	chr14	45512889	+
In-frame	ENST00000290650	ENST00000220420		TCGA	RV	LUSC	TCGA-66-2756-01A	UBR1	chr15	43276095	-	TGM5	chr15	43528035	-
In-frame	ENST00000290650	ENST00000349114		TCGA	RV	LUSC	TCGA-66-2756-01A	UBR1	chr15	43276095	-	TGM5	chr15	43528035	-
3UTR-3CDS	ENST00000382177	ENST00000220420		TCGA	RV	LUSC	TCGA-66-2756-01A	UBR1	chr15	43276095	-	TGM5	chr15	43528035	-
3UTR-3CDS	ENST00000382177	ENST00000349114		TCGA	RV	LUSC	TCGA-66-2756-01A	UBR1	chr15	43276095	-	TGM5	chr15	43528035	-
intron-3CDS	ENST00000568782	ENST00000220420		TCGA	RV	LUSC	TCGA-66-2756-01A	UBR1	chr15	43276095	-	TGM5	chr15	43528035	-
intron-3CDS	ENST00000568782	ENST00000349114		TCGA	RV	LUSC	TCGA-66-2756-01A	UBR1	chr15	43276095	-	TGM5	chr15	43528035	-
5CDS-intron	ENST00000293218	ENST00000537081		TCGA	RV	LUSC	TCGA-43-2581-01A	UNK	chr17	73781065	+	AVIL	chr12	58209842	-
5CDS-5UTR	ENST00000293218	ENST00000257861		TCGA	RV	LUSC	TCGA-43-2581-01A	UNK	chr17	73781065	+	AVIL	chr12	58209842	-
5CDS-intron	ENST00000293218	ENST00000550083		TCGA	RV	LUSC	TCGA-43-2581-01A	UNK	chr17	73781065	+	AVIL	chr12	58209842	-
5CDS-intron	ENST00000589666	ENST00000537081		TCGA	RV	LUSC	TCGA-43-2581-01A	UNK	chr17	73781065	+	AVIL	chr12	58209842	-
5CDS-5UTR	ENST00000589666	ENST00000257861		TCGA	RV	LUSC	TCGA-43-2581-01A	UNK	chr17	73781065	+	AVIL	chr12	58209842	-
5CDS-intron	ENST00000589666	ENST00000550083		TCGA	RV	LUSC	TCGA-43-2581-01A	UNK	chr17	73781065	+	AVIL	chr12	58209842	-
Frame-shit	ENST00000318006	ENST00000389834		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
Frame-shit	ENST00000318006	ENST00000448392		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
Frame-shit	ENST00000318006	ENST00000307216		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
5CDS-5UTR	ENST00000318006	ENST00000568432		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
Frame-shit	ENST00000348544	ENST00000389834		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
Frame-shit	ENST00000348544	ENST00000448392		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
Frame-shit	ENST00000348544	ENST00000307216		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
5CDS-5UTR	ENST00000348544	ENST00000568432		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
5UTR-3CDS	ENST00000568357	ENST00000389834		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
5UTR-3CDS	ENST00000568357	ENST00000448392		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
5UTR-3CDS	ENST00000568357	ENST00000307216		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
5UTR-5UTR	ENST00000568357	ENST00000568432		TCGA	RV	LUSC	TCGA-L3-A524-01A	VPS39	chr15	42492094	-	TMEM87A	chr15	42553447	-
Frame-shit	ENST00000287218	ENST00000376395		TCGA	RV	LUSC	TCGA-43-7657-01A	ZFAND3	chr6	37897775	+	UBQLN1	chr9	86301070	-
Frame-shit	ENST00000287218	ENST00000257468		TCGA	RV	LUSC	TCGA-43-7657-01A	ZFAND3	chr6	37897775	+	UBQLN1	chr9	86301070	-
Frame-shit	ENST00000373391	ENST00000376395		TCGA	RV	LUSC	TCGA-43-7657-01A	ZFAND3	chr6	37897775	+	UBQLN1	chr9	86301070	-
Frame-shit	ENST00000373391	ENST00000257468		TCGA	RV	LUSC	TCGA-43-7657-01A	ZFAND3	chr6	37897775	+	UBQLN1	chr9	86301070	-
intron-3CDS	ENST00000463847	ENST00000376395		TCGA	RV	LUSC	TCGA-43-7657-01A	ZFAND3	chr6	37897775	+	UBQLN1	chr9	86301070	-
intron-3CDS	ENST00000463847	ENST00000257468		TCGA	RV	LUSC	TCGA-43-7657-01A	ZFAND3	chr6	37897775	+	UBQLN1	chr9	86301070	-
5UTR-5UTR	ENST00000314393	ENST00000368747		TCGA	RV	LUSC	TCGA-98-8023-01A	ZHX2	chr8	123794185	+	LELP1	chr1	153177163	+
Frame-shit	ENST00000344318	ENST00000340170		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
In-frame	ENST00000344318	ENST00000263208		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
Frame-shit	ENST00000344318	ENST00000541063		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
5CDS-intron	ENST00000344318	ENST00000546308		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
5CDS-intron	ENST00000344318	ENST00000464189		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
In-frame	ENST00000397781	ENST00000340170		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
Frame-shit	ENST00000397781	ENST00000263208		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
In-frame	ENST00000397781	ENST00000541063		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
5CDS-intron	ENST00000397781	ENST00000546308		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
5CDS-intron	ENST00000397781	ENST00000464189		TCGA	RV	LUSC	TCGA-85-8048-01A	ZMAT5	chr22	30134319	-	HIRA	chr22	19319079	-
Frame-shit	ENST00000216254	ENST00000352645		TCGA	RV	LUSC	TCGA-56-A4BX-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41737092	+
Frame-shit	ENST00000216254	ENST00000351589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41737092	+
Frame-shit	ENST00000396512	ENST00000352645		TCGA	RV	LUSC	TCGA-56-A4BX-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41737092	+
Frame-shit	ENST00000396512	ENST00000351589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41737092	+
intron-3CDS	ENST00000466237	ENST00000352645		TCGA	RV	LUSC	TCGA-56-A4BX-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41737092	+
intron-3CDS	ENST00000466237	ENST00000351589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	ACO2	chr22	41865186	+	ZC3H7B	chr22	41737092	+
Frame-shit	ENST00000358716	ENST00000369291		TCGA	RV	LUSC	TCGA-63-6202-01A	BAZ1A	chr14	35343698	-	RNF115	chr1	145646115	+
In-frame	ENST00000382422	ENST00000369291		TCGA	RV	LUSC	TCGA-63-6202-01A	BAZ1A	chr14	35343698	-	RNF115	chr1	145646115	+
Frame-shit	ENST00000360310	ENST00000369291		TCGA	RV	LUSC	TCGA-63-6202-01A	BAZ1A	chr14	35343698	-	RNF115	chr1	145646115	+
intron-3CDS	ENST00000553853	ENST00000369291		TCGA	RV	LUSC	TCGA-63-6202-01A	BAZ1A	chr14	35343698	-	RNF115	chr1	145646115	+
5UTR-3CDS	ENST00000254977	ENST00000545844		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000254977	ENST00000567887		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000254977	ENST00000372915		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000254977	ENST00000361689		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000254977	ENST00000539005		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000254977	ENST00000317713		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000254977	ENST00000564288		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000254977	ENST00000289893		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000254977	ENST00000536367		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000254977	ENST00000484793		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000254977	ENST00000602421		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000254977	ENST00000476350		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000545844		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000567887		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000372915		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000361689		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000539005		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000317713		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000399006	ENST00000564288		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000399006	ENST00000289893		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000399006	ENST00000536367		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000399006	ENST00000484793		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000399006	ENST00000602421		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000399006	ENST00000476350		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000545844		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000567887		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000372915		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000361689		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000539005		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000317713		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-3CDS	ENST00000405977	ENST00000564288		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000405977	ENST00000289893		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000405977	ENST00000536367		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000405977	ENST00000484793		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000405977	ENST00000602421		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
5UTR-intron	ENST00000405977	ENST00000476350		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000545844		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000567887		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000372915		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000361689		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000539005		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000317713		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000378226	ENST00000564288		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000378226	ENST00000289893		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000378226	ENST00000536367		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000378226	ENST00000484793		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000378226	ENST00000602421		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000378226	ENST00000476350		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000545844		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000567887		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000372915		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000361689		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000539005		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000317713		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-3CDS	ENST00000488503	ENST00000564288		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000488503	ENST00000289893		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000488503	ENST00000536367		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000488503	ENST00000484793		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000488503	ENST00000602421		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
intron-intron	ENST00000488503	ENST00000476350		TCGA	RV	LUSC	TCGA-98-8021-01A	BTBD3	chr20	11871602	+	MACF1	chr1	39715686	+
Frame-shit	ENST00000287598	ENST00000325083		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000287598	ENST00000519253		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000287598	ENST00000524226		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000287598	ENST00000518537		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000287598	ENST00000518936		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000287598	ENST00000327578		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000412359	ENST00000325083		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000412359	ENST00000519253		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000412359	ENST00000524226		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000412359	ENST00000518537		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000412359	ENST00000518936		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000412359	ENST00000327578		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-3CDS	ENST00000560120	ENST00000325083		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-3CDS	ENST00000560120	ENST00000519253		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-3CDS	ENST00000560120	ENST00000524226		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-intron	ENST00000560120	ENST00000518537		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-intron	ENST00000560120	ENST00000518936		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-intron	ENST00000560120	ENST00000327578		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40462882	+	PCM1	chr8	17842956	+
3UTR-5UTR	ENST00000463837	ENST00000434459		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
3UTR-intron	ENST00000463837	ENST00000477661		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
3UTR-intron	ENST00000463837	ENST00000380872		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
3UTR-intron	ENST00000463837	ENST00000380859		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
5CDS-5UTR	ENST00000356786	ENST00000434459		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000356786	ENST00000477661		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000356786	ENST00000380872		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
5CDS-intron	ENST00000356786	ENST00000380859		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-5UTR	ENST00000301897	ENST00000434459		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-intron	ENST00000301897	ENST00000477661		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-intron	ENST00000301897	ENST00000380872		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-intron	ENST00000301897	ENST00000380859		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-5UTR	ENST00000359902	ENST00000434459		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-intron	ENST00000359902	ENST00000477661		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-intron	ENST00000359902	ENST00000380872		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
intron-intron	ENST00000359902	ENST00000380859		TCGA	RV	LUSC	TCGA-66-2758-01A	CCDC88B	chr11	64110797	+	AKR1C1	chr10	4950543	+
Frame-shit	ENST00000506447	ENST00000269143		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	CEP192	chr18	13001581	+	AFG3L2	chr18	12329782	-
5UTR-3CDS	ENST00000325971	ENST00000269143		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	CEP192	chr18	13001581	+	AFG3L2	chr18	12329782	-
intron-3CDS	ENST00000430049	ENST00000269143		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	CEP192	chr18	13001581	+	AFG3L2	chr18	12329782	-
intron-3CDS	ENST00000540847	ENST00000269143		TCGA	RV	LUSC	TCGA-J1-A4AH-01A	CEP192	chr18	13001581	+	AFG3L2	chr18	12329782	-
Frame-shit	ENST00000367943	ENST00000367058		TCGA	RV	LUSC	TCGA-46-3765-01A	DUSP12	chr1	161719935	+	CR2	chr1	207658809	+
Frame-shit	ENST00000367943	ENST00000367059		TCGA	RV	LUSC	TCGA-46-3765-01A	DUSP12	chr1	161719935	+	CR2	chr1	207658809	+
Frame-shit	ENST00000367943	ENST00000367057		TCGA	RV	LUSC	TCGA-46-3765-01A	DUSP12	chr1	161719935	+	CR2	chr1	207658809	+
Frame-shit	ENST00000367943	ENST00000458541		TCGA	RV	LUSC	TCGA-46-3765-01A	DUSP12	chr1	161719935	+	CR2	chr1	207658809	+
5CDS-intron	ENST00000367943	ENST00000485707		TCGA	RV	LUSC	TCGA-46-3765-01A	DUSP12	chr1	161719935	+	CR2	chr1	207658809	+
Frame-shit	ENST00000583610	ENST00000360317		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000394175		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000309481		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000520542		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000418519		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000394179		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000360317		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000394175		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000309481		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000520542		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000418519		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000394179		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000360317		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000394175		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000309481		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000520542		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000418519		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000394179		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000360317		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000394175		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000309481		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000520542		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000418519		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000394179		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
5UTR-3CDS	ENST00000394123	ENST00000520701		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-3CDS	ENST00000394123	ENST00000243389		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000394123	ENST00000429484		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000394123	ENST00000521925		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000394123	ENST00000521351		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-3CDS	ENST00000543466	ENST00000520701		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-3CDS	ENST00000543466	ENST00000243389		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000543466	ENST00000429484		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000543466	ENST00000521925		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000543466	ENST00000521351		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-3CDS	ENST00000356245	ENST00000520701		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-3CDS	ENST00000356245	ENST00000243389		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000356245	ENST00000429484		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000356245	ENST00000521925		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
5UTR-intron	ENST00000356245	ENST00000521351		TCGA	RV	LUSC	TCGA-94-8491-01A	G3BP1	chr5	151151597	+	SLC36A1	chr5	150856151	+
In-frame	ENST00000398645	ENST00000346672		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000398645	ENST00000360962		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000398645	ENST00000527634		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000398645	ENST00000540737		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000398645	ENST00000532565		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000398645	ENST00000525449		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
5CDS-intron	ENST00000398645	ENST00000527368		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000529006	ENST00000346672		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000529006	ENST00000360962		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000529006	ENST00000527634		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000529006	ENST00000540737		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000529006	ENST00000532565		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000529006	ENST00000525449		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
5CDS-intron	ENST00000529006	ENST00000527368		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526258	ENST00000346672		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526258	ENST00000360962		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526258	ENST00000527634		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526258	ENST00000540737		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526258	ENST00000532565		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000526258	ENST00000525449		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-intron	ENST00000526258	ENST00000527368		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000308783	ENST00000346672		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000308783	ENST00000360962		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000308783	ENST00000527634		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000308783	ENST00000540737		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000308783	ENST00000532565		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000308783	ENST00000525449		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-intron	ENST00000308783	ENST00000527368		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000530342	ENST00000346672		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000530342	ENST00000360962		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000530342	ENST00000527634		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000530342	ENST00000540737		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000530342	ENST00000532565		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-3CDS	ENST00000530342	ENST00000525449		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
intron-intron	ENST00000530342	ENST00000527368		TCGA	RV	LUSC	TCGA-43-2578-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66605841	+
In-frame	ENST00000368321	ENST00000368315		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368321	ENST00000313695		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368321	ENST00000361247		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368321	ENST00000368316		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368321	ENST00000462460		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368321	ENST00000477754		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368321	ENST00000313667		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000368320	ENST00000368315		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368320	ENST00000313695		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368320	ENST00000361247		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368320	ENST00000368316		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368320	ENST00000462460		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368320	ENST00000477754		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368320	ENST00000313667		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-3CDS	ENST00000368319	ENST00000368315		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000368319	ENST00000313695		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000368319	ENST00000361247		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000368319	ENST00000368316		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000368319	ENST00000462460		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000368319	ENST00000477754		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000368319	ENST00000313667		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-3CDS	ENST00000482337	ENST00000368315		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000482337	ENST00000313695		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000482337	ENST00000361247		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000482337	ENST00000368316		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000482337	ENST00000462460		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000482337	ENST00000477754		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000482337	ENST00000313667		TCGA	RV	LUSC	TCGA-85-8580-01A	KIAA0907	chr1	155891166	-	ARHGEF2	chr1	155939091	-
intron-3CDS	ENST00000448637	ENST00000169298		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000448637	ENST00000457772		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000448637	ENST00000448044		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-intron	ENST00000448637	ENST00000487031		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000312675	ENST00000169298		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000312675	ENST00000457772		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000312675	ENST00000448044		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-intron	ENST00000312675	ENST00000487031		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000543006	ENST00000169298		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000543006	ENST00000457772		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000543006	ENST00000448044		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-intron	ENST00000543006	ENST00000487031		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000471917	ENST00000169298		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000471917	ENST00000457772		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000471917	ENST00000448044		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
intron-intron	ENST00000471917	ENST00000487031		TCGA	RV	LUSC	TCGA-66-2756-01A	LPP	chr3	187871809	+	ST6GAL1	chr3	186790637	+
In-frame	ENST00000282488	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000282488	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000282486	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000282486	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000355460	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000355460	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
intron-3CDS	ENST00000493459	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
intron-5UTR	ENST00000493459	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000324210	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000324210	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000498502	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000498502	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000545754	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000545754	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000357472	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000357472	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000324196	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000324196	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000485910	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000485910	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000463374	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000463374	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000492948	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000492948	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
In-frame	ENST00000485509	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-5UTR	ENST00000485509	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
3UTR-3CDS	ENST00000461436	ENST00000292782		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
3UTR-5UTR	ENST00000461436	ENST00000469954		TCGA	RV	LUSC	TCGA-60-2696-01A	MBNL1	chr3	152018156	+	DCUN1D1	chr3	182683541	-
5CDS-intron	ENST00000405308	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000405308	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000405308	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000405308	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000405308	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000405308	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000359803	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000359803	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000359803	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000359803	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000359803	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000359803	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395569	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395569	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395569	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395569	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395569	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395569	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395566	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395566	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395566	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395566	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395566	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395566	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000533283	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000533283	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000533283	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000533283	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000533283	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000533283	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000407067	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000407067	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000407067	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000407067	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000407067	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000407067	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395565	ENST00000267101		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395565	ENST00000450146		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395565	ENST00000415288		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395565	ENST00000553131		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395565	ENST00000411731		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000395565	ENST00000549832		TCGA	RV	LUSC	TCGA-43-5668-01A	MDK	chr11	46405349	+	ERBB3	chr12	56492035	+
In-frame	ENST00000416426	ENST00000307142		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000416426	ENST00000448416		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000416426	ENST00000429713		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000416426	ENST00000434046		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000284073	ENST00000307142		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000284073	ENST00000448416		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000284073	ENST00000429713		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000284073	ENST00000434046		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000322684	ENST00000307142		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000322684	ENST00000448416		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000322684	ENST00000429713		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000322684	ENST00000434046		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000442934	ENST00000307142		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000442934	ENST00000448416		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000442934	ENST00000429713		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000442934	ENST00000434046		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000579180	ENST00000307142		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000579180	ENST00000448416		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000579180	ENST00000429713		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000579180	ENST00000434046		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000579505	ENST00000307142		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000579505	ENST00000448416		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000579505	ENST00000429713		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000579505	ENST00000434046		TCGA	RV	LUSC	TCGA-L3-A524-01A	MSI2	chr17	55478832	+	SYNPO2	chr4	119944585	+
Frame-shit	ENST00000296684	ENST00000523149		TCGA	RV	LUSC	TCGA-43-5668-01A	NDUFS4	chr5	52899360	+	EXTL3	chr8	28595036	+
Frame-shit	ENST00000296684	ENST00000220562		TCGA	RV	LUSC	TCGA-43-5668-01A	NDUFS4	chr5	52899360	+	EXTL3	chr8	28595036	+
5CDS-intron	ENST00000296684	ENST00000519886		TCGA	RV	LUSC	TCGA-43-5668-01A	NDUFS4	chr5	52899360	+	EXTL3	chr8	28595036	+
5CDS-intron	ENST00000356175	ENST00000497524		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-5UTR	ENST00000356175	ENST00000542281		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000356175	ENST00000418473		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-5UTR	ENST00000356175	ENST00000349243		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000356175	ENST00000404754		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-3UTR	ENST00000356175	ENST00000475166		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000356175	ENST00000475347		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000356175	ENST00000474935		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000356175	ENST00000461609		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000356175	ENST00000402260		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000497524		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-5UTR	ENST00000358273	ENST00000542281		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000418473		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-5UTR	ENST00000358273	ENST00000349243		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000404754		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-3UTR	ENST00000358273	ENST00000475166		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000475347		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000474935		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000461609		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
5CDS-intron	ENST00000358273	ENST00000402260		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000497524		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-5UTR	ENST00000431387	ENST00000542281		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000418473		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-5UTR	ENST00000431387	ENST00000349243		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000404754		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-3UTR	ENST00000431387	ENST00000475166		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000475347		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000474935		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000461609		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000431387	ENST00000402260		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000497524		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-5UTR	ENST00000581113	ENST00000542281		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000418473		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-5UTR	ENST00000581113	ENST00000349243		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000404754		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-3UTR	ENST00000581113	ENST00000475166		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000475347		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000474935		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000461609		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
3UTR-intron	ENST00000581113	ENST00000402260		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000497524		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-5UTR	ENST00000417592	ENST00000542281		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000418473		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-5UTR	ENST00000417592	ENST00000349243		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000404754		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-3UTR	ENST00000417592	ENST00000475166		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000475347		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000474935		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000461609		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000417592	ENST00000402260		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000497524		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-5UTR	ENST00000444181	ENST00000542281		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000418473		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-5UTR	ENST00000444181	ENST00000349243		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000404754		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-3UTR	ENST00000444181	ENST00000475166		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000475347		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000474935		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000461609		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
intron-intron	ENST00000444181	ENST00000402260		TCGA	RV	LUSC	TCGA-92-8063-01A	NF1	chr17	29662049	+	AGTR1	chr3	148425731	+
In-frame	ENST00000397661	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000397661	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000397661	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000397661	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000592199	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000592199	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000592199	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000592199	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000587760	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000587760	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000587760	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000587760	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000585575	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000585575	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000585575	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000585575	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000360105	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000360105	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000360105	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000360105	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000588228	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000588228	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000588228	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000588228	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000587260	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000587260	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000587260	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000587260	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000358552	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
In-frame	ENST00000358552	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-3UTR	ENST00000358552	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000358552	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
intron-3CDS	ENST00000588680	ENST00000414423		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
intron-3CDS	ENST00000588680	ENST00000295024		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
intron-3UTR	ENST00000588680	ENST00000366852		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
intron-intron	ENST00000588680	ENST00000479727		TCGA	RV	LUSC	TCGA-56-8628-01A	NFIX	chr19	13136366	+	WDR26	chr1	224581715	-
5CDS-intron	ENST00000531709	ENST00000311713		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000531709	ENST00000278856		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000531709	ENST00000529106		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000531709	ENST00000525239		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000531709	ENST00000525752		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000531709	ENST00000540620		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000294172	ENST00000311713		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000294172	ENST00000278856		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000294172	ENST00000529106		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000294172	ENST00000525239		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000294172	ENST00000525752		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000294172	ENST00000540620		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000532297	ENST00000311713		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000532297	ENST00000278856		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000532297	ENST00000529106		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000532297	ENST00000525239		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000532297	ENST00000525752		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000532297	ENST00000540620		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
intron-intron	ENST00000533048	ENST00000311713		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
intron-intron	ENST00000533048	ENST00000278856		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
intron-intron	ENST00000533048	ENST00000529106		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
intron-5UTR	ENST00000533048	ENST00000525239		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
intron-5UTR	ENST00000533048	ENST00000525752		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
intron-intron	ENST00000533048	ENST00000540620		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5UTR-intron	ENST00000531131	ENST00000311713		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5UTR-intron	ENST00000531131	ENST00000278856		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5UTR-intron	ENST00000531131	ENST00000529106		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5UTR-5UTR	ENST00000531131	ENST00000525239		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5UTR-5UTR	ENST00000531131	ENST00000525752		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5UTR-intron	ENST00000531131	ENST00000540620		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000439713	ENST00000311713		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000439713	ENST00000278856		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000439713	ENST00000529106		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000439713	ENST00000525239		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000439713	ENST00000525752		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-intron	ENST00000439713	ENST00000540620		TCGA	RV	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607178	-
5CDS-5UTR	ENST00000369135	ENST00000368995		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000369135	ENST00000368993		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000369135	ENST00000322343		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000369135	ENST00000361824		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
5CDS-5UTR	ENST00000369135	ENST00000476530		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000479905	ENST00000368995		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000479905	ENST00000368993		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000479905	ENST00000322343		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000479905	ENST00000361824		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
intron-5UTR	ENST00000479905	ENST00000476530		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	HORMAD1	chr1	150692014	-
In-frame	ENST00000264933	ENST00000264932		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000264933	ENST00000504309		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000264933	ENST00000510361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
5CDS-intron	ENST00000264933	ENST00000507522		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000505221	ENST00000264932		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000505221	ENST00000504309		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000505221	ENST00000510361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
5CDS-intron	ENST00000505221	ENST00000507522		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000509581	ENST00000264932		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000509581	ENST00000504309		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000509581	ENST00000510361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
5CDS-intron	ENST00000509581	ENST00000507522		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000507528	ENST00000264932		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000507528	ENST00000504309		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
In-frame	ENST00000507528	ENST00000510361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
5CDS-intron	ENST00000507528	ENST00000507522		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
intron-3CDS	ENST00000511482	ENST00000264932		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
intron-3CDS	ENST00000511482	ENST00000504309		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
intron-3CDS	ENST00000511482	ENST00000510361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
intron-intron	ENST00000511482	ENST00000507522		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PDCD6	chr5	272887	+	SDHA	chr5	240473	+
Frame-shit	ENST00000263857	ENST00000165698		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000535845		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000541910		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000263857	ENST00000538924		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000540790		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000263857	ENST00000473407		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000409681	ENST00000165698		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000535845		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000541910		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409681	ENST00000538924		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000540790		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409681	ENST00000473407		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-3CDS	ENST00000483538	ENST00000165698		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000535845		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000541910		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-intron	ENST00000483538	ENST00000538924		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000540790		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
5UTR-5UTR	ENST00000483538	ENST00000473407		TCGA	RV	LUSC	TCGA-77-8133-01A	POLR1A	chr2	86292397	-	REEP1	chr2	86509365	-
In-frame	ENST00000413366	ENST00000258729		TCGA	RV	LUSC	TCGA-33-4587-01A	PRKCA	chr17	64492401	+	IGF2BP3	chr7	23358873	-
5CDS-intron	ENST00000413366	ENST00000491719		TCGA	RV	LUSC	TCGA-33-4587-01A	PRKCA	chr17	64492401	+	IGF2BP3	chr7	23358873	-
intron-3CDS	ENST00000583361	ENST00000258729		TCGA	RV	LUSC	TCGA-33-4587-01A	PRKCA	chr17	64492401	+	IGF2BP3	chr7	23358873	-
intron-intron	ENST00000583361	ENST00000491719		TCGA	RV	LUSC	TCGA-33-4587-01A	PRKCA	chr17	64492401	+	IGF2BP3	chr7	23358873	-
5UTR-3CDS	ENST00000535300	ENST00000372572		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
5UTR-3CDS	ENST00000535300	ENST00000372573		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
5UTR-3CDS	ENST00000535300	ENST00000361346		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
5UTR-3CDS	ENST00000535300	ENST00000361776		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
5UTR-3CDS	ENST00000535300	ENST00000545068		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
5UTR-3CDS	ENST00000535300	ENST00000372571		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
3UTR-3CDS	ENST00000496055	ENST00000372572		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
3UTR-3CDS	ENST00000496055	ENST00000372573		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
3UTR-3CDS	ENST00000496055	ENST00000361346		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
3UTR-3CDS	ENST00000496055	ENST00000361776		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
3UTR-3CDS	ENST00000496055	ENST00000545068		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
3UTR-3CDS	ENST00000496055	ENST00000372571		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000319942	ENST00000372572		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000319942	ENST00000372573		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000319942	ENST00000361346		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000319942	ENST00000361776		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000319942	ENST00000545068		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000319942	ENST00000372571		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000370826	ENST00000372572		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000370826	ENST00000372573		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000370826	ENST00000361346		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000370826	ENST00000361776		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000370826	ENST00000545068		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000370826	ENST00000372571		TCGA	RV	LUSC	TCGA-22-4601-01A	RABGGTB	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000389100	ENST00000503787		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000389100	ENST00000506123		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000389100	ENST00000296734		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000389100	ENST00000515370		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
Frame-shit	ENST00000296615	ENST00000503787		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000296615	ENST00000506123		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000296615	ENST00000296734		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000296615	ENST00000515370		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
Frame-shit	ENST00000381081	ENST00000503787		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000381081	ENST00000506123		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000381081	ENST00000296734		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
5CDS-3UTR	ENST00000381081	ENST00000515370		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RNF180	chr5	63513223	+	GPX8	chr5	54459883	+
Frame-shit	ENST00000262352	ENST00000357248		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
Frame-shit	ENST00000262352	ENST00000349721		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
Frame-shit	ENST00000262352	ENST00000382203		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
Frame-shit	ENST00000262352	ENST00000382194		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
5CDS-intron	ENST00000262352	ENST00000491574		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
5CDS-intron	ENST00000262352	ENST00000324954		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
5CDS-intron	ENST00000262352	ENST00000302401		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
5CDS-intron	ENST00000262352	ENST00000382186		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
5CDS-intron	ENST00000262352	ENST00000382185		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-3CDS	ENST00000490167	ENST00000357248		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-3CDS	ENST00000490167	ENST00000349721		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-3CDS	ENST00000490167	ENST00000382203		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-3CDS	ENST00000490167	ENST00000382194		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-intron	ENST00000490167	ENST00000491574		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-intron	ENST00000490167	ENST00000324954		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-intron	ENST00000490167	ENST00000302401		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-intron	ENST00000490167	ENST00000382186		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
intron-intron	ENST00000490167	ENST00000382185		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	SLC1A1	chr9	4490770	+	SMARCA2	chr9	2096657	+
In-frame	ENST00000265631	ENST00000419488		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000265631	ENST00000354212		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000265631	ENST00000522391		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000265631	ENST00000536571		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000265631	ENST00000535697		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
5CDS-intron	ENST00000265631	ENST00000517762		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000416240	ENST00000419488		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000416240	ENST00000354212		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000416240	ENST00000522391		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000416240	ENST00000536571		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
In-frame	ENST00000416240	ENST00000535697		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
5CDS-intron	ENST00000416240	ENST00000517762		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
Frame-shit	ENST00000542654	ENST00000419488		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
Frame-shit	ENST00000542654	ENST00000354212		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
Frame-shit	ENST00000542654	ENST00000522391		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
Frame-shit	ENST00000542654	ENST00000536571		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
Frame-shit	ENST00000542654	ENST00000535697		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
5CDS-intron	ENST00000542654	ENST00000517762		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
intron-3CDS	ENST00000494085	ENST00000419488		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
intron-3CDS	ENST00000494085	ENST00000354212		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
intron-3CDS	ENST00000494085	ENST00000522391		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
intron-3CDS	ENST00000494085	ENST00000536571		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
intron-3CDS	ENST00000494085	ENST00000535697		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
intron-intron	ENST00000494085	ENST00000517762		TCGA	RV	LUSC	TCGA-77-8144-01A	SLC25A13	chr7	95814239	-	MAGI2	chr7	77998530	-
Frame-shit	ENST00000336278	ENST00000314423		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
Frame-shit	ENST00000336278	ENST00000352319		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
Frame-shit	ENST00000336278	ENST00000563094		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
5CDS-intron	ENST00000336278	ENST00000569615		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
3UTR-3CDS	ENST00000528525	ENST00000314423		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
3UTR-3CDS	ENST00000528525	ENST00000352319		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
3UTR-3CDS	ENST00000528525	ENST00000563094		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
3UTR-intron	ENST00000528525	ENST00000569615		TCGA	RV	LUSC	TCGA-37-A5EL-01A	SNTB2	chr16	69221636	+	CIRH1A	chr16	69187487	+
In-frame	ENST00000424789	ENST00000413366		TCGA	RV	LUSC	TCGA-43-2581-01A	TANC2	chr17	61151375	+	PRKCA	chr17	64683229	+
5CDS-intron	ENST00000424789	ENST00000583361		TCGA	RV	LUSC	TCGA-43-2581-01A	TANC2	chr17	61151375	+	PRKCA	chr17	64683229	+
In-frame	ENST00000389520	ENST00000413366		TCGA	RV	LUSC	TCGA-43-2581-01A	TANC2	chr17	61151375	+	PRKCA	chr17	64683229	+
5CDS-intron	ENST00000389520	ENST00000583361		TCGA	RV	LUSC	TCGA-43-2581-01A	TANC2	chr17	61151375	+	PRKCA	chr17	64683229	+
intron-3CDS	ENST00000537971	ENST00000381031		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000537971	ENST00000445282		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
5UTR-3CDS	ENST00000011898	ENST00000381031		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
5UTR-3CDS	ENST00000011898	ENST00000445282		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000407263	ENST00000381031		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000407263	ENST00000445282		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000492305	ENST00000381031		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000492305	ENST00000445282		TCGA	RV	LUSC	TCGA-63-A5MW-01A	TSPAN9	chr12	3192885	+	TTC38	chr22	46688688	+
Frame-shit	ENST00000367094	ENST00000440973		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367094	ENST00000338799		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367094	ENST00000456483		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367094	ENST00000443427		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367094	ENST00000206249		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-intron	ENST00000367094	ENST00000406599		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-intron	ENST00000367094	ENST00000427531		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-intron	ENST00000367094	ENST00000482101		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367097	ENST00000440973		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367097	ENST00000338799		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367097	ENST00000456483		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367097	ENST00000443427		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
Frame-shit	ENST00000367097	ENST00000206249		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-intron	ENST00000367097	ENST00000406599		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-intron	ENST00000367097	ENST00000427531		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-intron	ENST00000367097	ENST00000482101		TCGA	RV	LUSC	TCGA-66-2788-01A	TULP4	chr6	158735300	+	ESR1	chr6	152201790	+
5CDS-5UTR	ENST00000382869	ENST00000382255		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382869	ENST00000382251		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382869	ENST00000412350		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382869	ENST00000302441		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382869	ENST00000259622		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382869	ENST00000358146		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000382881	ENST00000382255		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000382881	ENST00000382251		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000382881	ENST00000412350		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000382881	ENST00000302441		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-intron	ENST00000382881	ENST00000259622		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-intron	ENST00000382881	ENST00000358146		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382874	ENST00000382255		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382874	ENST00000382251		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382874	ENST00000412350		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382874	ENST00000302441		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382874	ENST00000259622		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382874	ENST00000358146		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382871	ENST00000382255		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382871	ENST00000382251		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382871	ENST00000412350		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382871	ENST00000302441		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382871	ENST00000259622		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382871	ENST00000358146		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382883	ENST00000382255		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382883	ENST00000382251		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382883	ENST00000412350		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000382883	ENST00000302441		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382883	ENST00000259622		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-intron	ENST00000382883	ENST00000358146		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000494061	ENST00000382255		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000494061	ENST00000382251		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000494061	ENST00000412350		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-5UTR	ENST00000494061	ENST00000302441		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-intron	ENST00000494061	ENST00000259622		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
intron-intron	ENST00000494061	ENST00000358146		TCGA	RV	LUSC	TCGA-66-2744-01A	ZMYM2	chr13	20611049	+	DMRT2	chr9	1051570	+
5CDS-5UTR	ENST00000398457	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000398457	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
3UTR-5UTR	ENST00000462050	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
3UTR-5UTR	ENST00000462050	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000347800	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000347800	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000398449	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000398449	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000361802	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000361802	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000343687	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000343687	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000398437	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000398437	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000340588	ENST00000402061		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
5CDS-5UTR	ENST00000340588	ENST00000255784		TCGA	RV	LUSC	TCGA-43-5670-01A	ABCG1	chr21	43714770	+	CCDC134	chr22	42204879	+
intron-5UTR	ENST00000568478	ENST00000319410		TCGA	RV	LUSC	TCGA-56-8626-01A	ADAT1	chr16	75654529	-	KARS	chr16	75678360	-
intron-intron	ENST00000568478	ENST00000302445		TCGA	RV	LUSC	TCGA-56-8626-01A	ADAT1	chr16	75654529	-	KARS	chr16	75678360	-
intron-5UTR	ENST00000568478	ENST00000568378		TCGA	RV	LUSC	TCGA-56-8626-01A	ADAT1	chr16	75654529	-	KARS	chr16	75678360	-
5CDS-5UTR	ENST00000307921	ENST00000319410		TCGA	RV	LUSC	TCGA-56-8626-01A	ADAT1	chr16	75654529	-	KARS	chr16	75678360	-
5CDS-intron	ENST00000307921	ENST00000302445		TCGA	RV	LUSC	TCGA-56-8626-01A	ADAT1	chr16	75654529	-	KARS	chr16	75678360	-
5CDS-5UTR	ENST00000307921	ENST00000568378		TCGA	RV	LUSC	TCGA-56-8626-01A	ADAT1	chr16	75654529	-	KARS	chr16	75678360	-
In-frame	ENST00000294016	ENST00000321728		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
In-frame	ENST00000294016	ENST00000303531		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000294016	ENST00000482000		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000294016	ENST00000498058		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000571889	ENST00000321728		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000571889	ENST00000303531		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
intron-intron	ENST00000571889	ENST00000482000		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
intron-intron	ENST00000571889	ENST00000498058		TCGA	RV	LUSC	TCGA-33-4533-01A	ADCY9	chr16	4163751	-	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000221561	ENST00000587758		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000588426		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000356783		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000291901		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000536926		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000588981		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000587465		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000585321		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000221561	ENST00000592920		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000587758		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000588426		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000356783		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000291901		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000536926		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000588981		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000587465		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000585321		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000327141	ENST00000592920		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000587758		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000588426		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000356783		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000291901		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000536926		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000588981		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000587465		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000585321		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000592330	ENST00000592920		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000587758		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000588426		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000356783		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000291901		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000536926		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000588981		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000587465		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000585321		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
intron-intron	ENST00000586839	ENST00000592920		TCGA	RV	LUSC	TCGA-52-7812-01A	AES	chr19	3052908	-	TNNT1	chr19	55646910	-
Frame-shit	ENST00000323116	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
Frame-shit	ENST00000323116	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000323116	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000323116	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000323116	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000323116	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000323116	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
Frame-shit	ENST00000493826	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
Frame-shit	ENST00000493826	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000493826	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000493826	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000493826	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000493826	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
5CDS-intron	ENST00000493826	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-3CDS	ENST00000482794	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-3CDS	ENST00000482794	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-intron	ENST00000482794	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-intron	ENST00000482794	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-intron	ENST00000482794	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-intron	ENST00000482794	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
intron-intron	ENST00000482794	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7823-01B	ATP11B	chr3	182511574	+	FXR1	chr3	180685839	+
In-frame	ENST00000333926	ENST00000023897		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
In-frame	ENST00000333926	ENST00000428797		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
In-frame	ENST00000333926	ENST00000393943		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
In-frame	ENST00000333926	ENST00000437025		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
In-frame	ENST00000333926	ENST00000420560		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
In-frame	ENST00000333926	ENST00000444819		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
intron-3CDS	ENST00000488388	ENST00000023897		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
intron-3CDS	ENST00000488388	ENST00000428797		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
intron-3CDS	ENST00000488388	ENST00000393943		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
intron-3CDS	ENST00000488388	ENST00000437025		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
intron-3CDS	ENST00000488388	ENST00000420560		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
intron-3CDS	ENST00000488388	ENST00000444819		TCGA	RV	LUSC	TCGA-66-2782-01A	CISD1	chr10	60029064	+	GABRA1	chr5	161322672	+
In-frame	ENST00000296414	ENST00000264485		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000296414	ENST00000425175		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000296414	ENST00000351898		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000296414	ENST00000340595		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
5CDS-intron	ENST00000296414	ENST00000514331		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
5CDS-intron	ENST00000296414	ENST00000512686		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000512369	ENST00000264485		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000512369	ENST00000425175		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000512369	ENST00000351898		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
In-frame	ENST00000512369	ENST00000340595		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
5CDS-intron	ENST00000512369	ENST00000514331		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
5CDS-intron	ENST00000512369	ENST00000512686		TCGA	RV	LUSC	TCGA-85-8070-01A	DAPP1	chr4	100774505	+	SLC4A4	chr4	72399944	+
Frame-shit	ENST00000301180	ENST00000293618		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
Frame-shit	ENST00000301180	ENST00000429001		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
Frame-shit	ENST00000301180	ENST00000398473		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
Frame-shit	ENST00000301180	ENST00000518444		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
Frame-shit	ENST00000301180	ENST00000347328		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
Frame-shit	ENST00000301180	ENST00000522085		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
Frame-shit	ENST00000301180	ENST00000518561		TCGA	RV	LUSC	TCGA-66-2800-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50848097	+
5CDS-intron	ENST00000232458	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000232458	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000392692	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000427830	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000417960	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000441497	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000477496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000460856		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000240874		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000360013		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000393496		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000291478		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000428018		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000459915		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
5CDS-intron	ENST00000540509	ENST00000462213		TCGA	RV	LUSC	TCGA-60-2710-01A	ECT2	chr3	172491812	+	KALRN	chr3	124065990	+
Frame-shit	ENST00000262809	ENST00000371362		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000262809	ENST00000371360		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000262809	ENST00000545928		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000262809	ENST00000420619		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000596124	ENST00000371362		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000596124	ENST00000371360		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000596124	ENST00000545928		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
Frame-shit	ENST00000596124	ENST00000420619		TCGA	RV	LUSC	TCGA-85-A53L-01A	ELL	chr19	18572388	-	LDLRAD1	chr1	54476083	-
5UTR-3CDS	ENST00000281708	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000281708	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000603548	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000603548	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000604872	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000604872	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000296555	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000296555	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000263981	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000263981	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000393956	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000393956	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000603841	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
intron-3CDS	ENST00000603841	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000604095	ENST00000304385		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-3CDS	ENST00000604095	ENST00000504064		TCGA	RV	LUSC	TCGA-56-A4BY-01A	FBXW7	chr4	153456093	-	TMEM154	chr4	153574079	-
5UTR-5UTR	ENST00000543273	ENST00000496728		TCGA	RV	LUSC	TCGA-68-A59I-01A	GATS	chr7	99869461	-	TSC22D4	chr7	100065223	-
5UTR-5UTR	ENST00000543273	ENST00000300181		TCGA	RV	LUSC	TCGA-68-A59I-01A	GATS	chr7	99869461	-	TSC22D4	chr7	100065223	-
5UTR-5UTR	ENST00000543273	ENST00000393991		TCGA	RV	LUSC	TCGA-68-A59I-01A	GATS	chr7	99869461	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000436886	ENST00000496728		TCGA	RV	LUSC	TCGA-68-A59I-01A	GATS	chr7	99869461	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000436886	ENST00000300181		TCGA	RV	LUSC	TCGA-68-A59I-01A	GATS	chr7	99869461	-	TSC22D4	chr7	100065223	-
5CDS-5UTR	ENST00000436886	ENST00000393991		TCGA	RV	LUSC	TCGA-68-A59I-01A	GATS	chr7	99869461	-	TSC22D4	chr7	100065223	-
In-frame	ENST00000354577	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
In-frame	ENST00000354577	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000354577	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000354577	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000354577	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-intron	ENST00000354577	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000403834	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000403834	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000403834	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000403834	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000403834	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000403834	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000368068	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000368068	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000368068	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000368068	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000368068	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000368068	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000479213	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000479213	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000479213	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000479213	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000479213	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000479213	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
In-frame	ENST00000368060	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
In-frame	ENST00000368060	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000368060	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000368060	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000368060	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
5CDS-intron	ENST00000368060	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000368058	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000368058	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000368058	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000368058	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000368058	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000368058	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000545957	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000545957	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000545957	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000545957	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000545957	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000545957	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000368053	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000368053	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000368053	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000368053	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000368053	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000368053	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000540546	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000540546	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000540546	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000540546	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000540546	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000540546	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000539158	ENST00000521654		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3CDS	ENST00000539158	ENST00000560949		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-3UTR	ENST00000539158	ENST00000454842		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000539158	ENST00000368414		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-5UTR	ENST00000539158	ENST00000359704		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
intron-intron	ENST00000539158	ENST00000275184		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	MED23	chr6	131908849	-	RNF217	chr6	125366357	+
In-frame	ENST00000580900	ENST00000298049		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
In-frame	ENST00000580900	ENST00000217182		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
In-frame	ENST00000380172	ENST00000298049		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
In-frame	ENST00000380172	ENST00000217182		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
5UTR-3CDS	ENST00000460874	ENST00000298049		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
5UTR-3CDS	ENST00000460874	ENST00000217182		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
intron-3CDS	ENST00000427788	ENST00000298049		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
intron-3CDS	ENST00000427788	ENST00000217182		TCGA	RV	LUSC	TCGA-63-A5MM-01A	MTAP	chr9	21802780	+	EEF1A2	chr20	62127388	-
Frame-shit	ENST00000397063	ENST00000286063		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000397063	ENST00000358450		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397063	ENST00000450799		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397063	ENST00000409504		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397063	ENST00000389683		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397063	ENST00000449286		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000397063	ENST00000497003		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
In-frame	ENST00000397062	ENST00000286063		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
In-frame	ENST00000397062	ENST00000358450		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397062	ENST00000450799		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397062	ENST00000409504		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397062	ENST00000389683		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000397062	ENST00000449286		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000397062	ENST00000497003		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000446151	ENST00000286063		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000446151	ENST00000358450		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000446151	ENST00000450799		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000446151	ENST00000409504		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000446151	ENST00000389683		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000446151	ENST00000449286		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000446151	ENST00000497003		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000464747	ENST00000286063		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000464747	ENST00000358450		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000464747	ENST00000450799		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000464747	ENST00000409504		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000464747	ENST00000389683		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000464747	ENST00000449286		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000464747	ENST00000497003		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000423513	ENST00000286063		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000423513	ENST00000358450		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000423513	ENST00000450799		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000423513	ENST00000409504		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000423513	ENST00000389683		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000423513	ENST00000449286		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
intron-5UTR	ENST00000423513	ENST00000497003		TCGA	RV	LUSC	TCGA-18-4721-01A	NFE2L2	chr2	178097120	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000404141	ENST00000356309		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
Frame-shit	ENST00000404141	ENST00000409423		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
In-frame	ENST00000404141	ENST00000275830		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000404141	ENST00000409339		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000404141	ENST00000449727		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000404141	ENST00000541468		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000404141	ENST00000479022		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
Frame-shit	ENST00000397192	ENST00000356309		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
Frame-shit	ENST00000397192	ENST00000409423		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
In-frame	ENST00000397192	ENST00000275830		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000397192	ENST00000409339		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000397192	ENST00000449727		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000397192	ENST00000541468		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5CDS-intron	ENST00000397192	ENST00000479022		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-3CDS	ENST00000473219	ENST00000356309		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-3CDS	ENST00000473219	ENST00000409423		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-3CDS	ENST00000473219	ENST00000275830		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-intron	ENST00000473219	ENST00000409339		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-intron	ENST00000473219	ENST00000449727		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-intron	ENST00000473219	ENST00000541468		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-intron	ENST00000473219	ENST00000479022		TCGA	RV	LUSC	TCGA-94-8491-01A	PAXIP1	chr7	154790360	-	NCAPG2	chr7	158424409	-
5UTR-3CDS	ENST00000457734	ENST00000499676		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000489671		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000486111		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000477292		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000495310		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000467072		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000317104		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000310282		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000479040		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-3CDS	ENST00000457734	ENST00000397991		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
5UTR-intron	ENST00000457734	ENST00000464782		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000499676		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000489671		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000486111		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000477292		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000495310		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000467072		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000317104		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000310282		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000479040		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000337777	ENST00000397991		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-intron	ENST00000337777	ENST00000464782		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000499676		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000489671		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000486111		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000477292		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000495310		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000467072		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000317104		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000310282		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000479040		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-3CDS	ENST00000497002	ENST00000397991		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
intron-intron	ENST00000497002	ENST00000464782		TCGA	RV	LUSC	TCGA-18-3416-01A	PLS1	chr3	142315351	+	TFDP2	chr3	141682805	-
In-frame	ENST00000373647	ENST00000321582		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
5CDS-5UTR	ENST00000373647	ENST00000474723		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
5CDS-5UTR	ENST00000373647	ENST00000373776		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
intron-3CDS	ENST00000493854	ENST00000321582		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
intron-5UTR	ENST00000493854	ENST00000474723		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
intron-5UTR	ENST00000493854	ENST00000373776		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
intron-3CDS	ENST00000373643	ENST00000321582		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
intron-5UTR	ENST00000373643	ENST00000474723		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
intron-5UTR	ENST00000373643	ENST00000373776		TCGA	RV	LUSC	TCGA-90-A59Q-01A	RABGAP1	chr9	125782738	+	TTLL11	chr9	124801647	-
Frame-shit	ENST00000393328	ENST00000240333		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
Frame-shit	ENST00000393328	ENST00000415270		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
In-frame	ENST00000393331	ENST00000240333		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
In-frame	ENST00000393331	ENST00000415270		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
In-frame	ENST00000347630	ENST00000240333		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
In-frame	ENST00000347630	ENST00000415270		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
In-frame	ENST00000504102	ENST00000240333		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
In-frame	ENST00000504102	ENST00000415270		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
Frame-shit	ENST00000503676	ENST00000240333		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
Frame-shit	ENST00000503676	ENST00000415270		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
intron-3CDS	ENST00000513080	ENST00000240333		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
intron-3CDS	ENST00000513080	ENST00000415270		TCGA	RV	LUSC	TCGA-22-4613-01A	SPOP	chr17	47684612	-	SLC35B1	chr17	47781588	-
5UTR-intron	ENST00000526757	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000526757	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-5UTR	ENST00000526757	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000526757	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000534127	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000534127	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-5UTR	ENST00000534127	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000534127	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000313726	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000313726	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-5UTR	ENST00000313726	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000313726	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000357665	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000357665	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-5UTR	ENST00000357665	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-intron	ENST00000357665	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000530438	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000530438	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-5UTR	ENST00000530438	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000530438	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000530991	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000530991	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-5UTR	ENST00000530991	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000530991	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000526099	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000526099	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-5UTR	ENST00000526099	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000526099	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000534278	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000534278	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-5UTR	ENST00000534278	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000534278	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000531237	ENST00000309134		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000531237	ENST00000534025		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-5UTR	ENST00000531237	ENST00000525069		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
intron-intron	ENST00000531237	ENST00000528117		TCGA	RV	LUSC	TCGA-56-8625-01A	ST5	chr11	8832794	-	TMEM9B	chr11	8983730	-
5UTR-5UTR	ENST00000447404	ENST00000473039		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000373624		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000542603		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000394219		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000373620		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000394215		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000447404	ENST00000373618		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000473039		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000373624		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000542603		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000394219		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000373620		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000394215		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000348403	ENST00000373618		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000473039		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000373624		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000542603		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000394219		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000373620		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000394215		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000360998	ENST00000373618		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000473039		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000373624		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000542603		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000394219		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000373620		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000394215		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-intron	ENST00000530364	ENST00000373618		TCGA	RV	LUSC	TCGA-43-7658-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-3CDS	ENST00000407690	ENST00000520113		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407690	ENST00000369538		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407690	ENST00000353928		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407431	ENST00000520113		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407431	ENST00000369538		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407431	ENST00000353928		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407148	ENST00000520113		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407148	ENST00000369538		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000407148	ENST00000353928		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000405938	ENST00000520113		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000405938	ENST00000369538		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
5UTR-3CDS	ENST00000405938	ENST00000353928		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
intron-3CDS	ENST00000496523	ENST00000520113		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
intron-3CDS	ENST00000496523	ENST00000369538		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
intron-3CDS	ENST00000496523	ENST00000353928		TCGA	RV	LUSC	TCGA-39-5019-01A	TFIP11	chr22	26908065	-	AMPD1	chr1	115231362	-
In-frame	ENST00000394417	ENST00000427836		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000394417	ENST00000389247		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000394417	ENST00000457206		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000467648	ENST00000427836		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000467648	ENST00000389247		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000467648	ENST00000457206		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
intron-3CDS	ENST00000487469	ENST00000427836		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
intron-3CDS	ENST00000487469	ENST00000389247		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
intron-3CDS	ENST00000487469	ENST00000457206		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000337130	ENST00000427836		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000337130	ENST00000389247		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000337130	ENST00000457206		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000445915	ENST00000427836		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000445915	ENST00000389247		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
In-frame	ENST00000445915	ENST00000457206		TCGA	RV	LUSC	TCGA-56-8083-01A	UGP2	chr2	64085070	+	PLEKHM3	chr2	208795843	-
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	LUSC	TCGA-22-4604-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	LUSC	TCGA-22-4604-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-intron	ENST00000430629	ENST00000480033		TCGA	RV	LUSC	TCGA-22-4604-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	LUSC	TCGA-22-4604-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	LUSC	TCGA-22-4604-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-intron	ENST00000536657	ENST00000480033		TCGA	RV	LUSC	TCGA-22-4604-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27879696	-
5UTR-3CDS	ENST00000514251	ENST00000286353		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5UTR-5UTR	ENST00000514251	ENST00000502783		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5UTR-5UTR	ENST00000514251	ENST00000393010		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5UTR-intron	ENST00000514251	ENST00000505502		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5UTR-intron	ENST00000514251	ENST00000504264		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5UTR-intron	ENST00000514251	ENST00000508812		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5UTR-intron	ENST00000514251	ENST00000393007		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-3CDS	ENST00000321464	ENST00000286353		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000321464	ENST00000502783		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000321464	ENST00000393010		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000321464	ENST00000505502		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000321464	ENST00000504264		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000321464	ENST00000508812		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000321464	ENST00000393007		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-3CDS	ENST00000441582	ENST00000286353		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000441582	ENST00000502783		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000441582	ENST00000393010		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000441582	ENST00000505502		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000441582	ENST00000504264		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000441582	ENST00000508812		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000441582	ENST00000393007		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-3CDS	ENST00000512327	ENST00000286353		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000512327	ENST00000502783		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000512327	ENST00000393010		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000512327	ENST00000505502		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000512327	ENST00000504264		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000512327	ENST00000508812		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000512327	ENST00000393007		TCGA	RV	LUSC	TCGA-56-7823-01B	ZBTB38	chr3	141122873	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000302538	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-intron	ENST00000302538	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-intron	ENST00000302538	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
5CDS-5UTR	ENST00000302538	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000544583	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000544583	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000544583	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000572441	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000572441	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000572441	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000574437	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000574437	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000574437	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000291107	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000291107	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000291107	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000543210	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000543210	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000543210	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000536794	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000536794	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000536794	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000437099		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000323816		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000432992		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000540214		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000585266		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000573895	ENST00000580865		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-intron	ENST00000573895	ENST00000583882		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000542249		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000396115		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000579158		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
intron-5UTR	ENST00000573895	ENST00000578655		TCGA	RV	LUSC	TCGA-66-2769-01A	ABR	chr17	1082961	-	GAS7	chr17	9923214	-
Frame-shit	ENST00000252699	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
Frame-shit	ENST00000252699	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
Frame-shit	ENST00000252699	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
5CDS-intron	ENST00000252699	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000424234	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000424234	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000424234	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-intron	ENST00000424234	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000390009	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000390009	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000390009	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-intron	ENST00000390009	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000497637	ENST00000409235		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000497637	ENST00000410018		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-3CDS	ENST00000497637	ENST00000215069		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
intron-intron	ENST00000497637	ENST00000467739		TCGA	RV	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38834220	+
In-frame	ENST00000265742	ENST00000297293		TCGA	RV	LUSC	TCGA-56-8083-01A	ANKIB1	chr7	91981956	+	LMTK2	chr7	97814363	+
5CDS-intron	ENST00000265742	ENST00000493372		TCGA	RV	LUSC	TCGA-56-8083-01A	ANKIB1	chr7	91981956	+	LMTK2	chr7	97814363	+
intron-3CDS	ENST00000486698	ENST00000297293		TCGA	RV	LUSC	TCGA-56-8083-01A	ANKIB1	chr7	91981956	+	LMTK2	chr7	97814363	+
intron-intron	ENST00000486698	ENST00000493372		TCGA	RV	LUSC	TCGA-56-8083-01A	ANKIB1	chr7	91981956	+	LMTK2	chr7	97814363	+
In-frame	ENST00000258530	ENST00000392521		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
In-frame	ENST00000258530	ENST00000261833		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
5CDS-5UTR	ENST00000258530	ENST00000537607		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-3CDS	ENST00000539978	ENST00000392521		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-3CDS	ENST00000539978	ENST00000261833		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-5UTR	ENST00000539978	ENST00000537607		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-3CDS	ENST00000546731	ENST00000392521		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-3CDS	ENST00000546731	ENST00000261833		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-5UTR	ENST00000546731	ENST00000537607		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
In-frame	ENST00000551662	ENST00000392521		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
In-frame	ENST00000551662	ENST00000261833		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
5CDS-5UTR	ENST00000551662	ENST00000537607		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-3CDS	ENST00000549573	ENST00000392521		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-3CDS	ENST00000549573	ENST00000261833		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
intron-5UTR	ENST00000549573	ENST00000537607		TCGA	RV	LUSC	TCGA-34-5232-01A	APPL2	chr12	105629737	-	CIT	chr12	120198859	-
In-frame	ENST00000397498	ENST00000569600		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
In-frame	ENST00000397498	ENST00000219139		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5CDS-3UTR	ENST00000397498	ENST00000569683		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
intron-3CDS	ENST00000573392	ENST00000569600		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
intron-3CDS	ENST00000573392	ENST00000219139		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
intron-3UTR	ENST00000573392	ENST00000569683		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5UTR-3CDS	ENST00000574938	ENST00000569600		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5UTR-3CDS	ENST00000574938	ENST00000219139		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5UTR-3UTR	ENST00000574938	ENST00000569683		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5UTR-3CDS	ENST00000570561	ENST00000569600		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5UTR-3CDS	ENST00000570561	ENST00000219139		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
5UTR-3UTR	ENST00000570561	ENST00000569683		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
intron-3CDS	ENST00000576135	ENST00000569600		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
intron-3CDS	ENST00000576135	ENST00000219139		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
intron-3UTR	ENST00000576135	ENST00000569683		TCGA	RV	LUSC	TCGA-37-3792-01A	ARL16	chr17	79650566	-	C16orf70	chr16	67159862	+
Frame-shit	ENST00000323116	ENST00000328913		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
Frame-shit	ENST00000323116	ENST00000473233		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
Frame-shit	ENST00000323116	ENST00000447025		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
Frame-shit	ENST00000323116	ENST00000414362		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
5CDS-intron	ENST00000323116	ENST00000468976		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000493826	ENST00000328913		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000493826	ENST00000473233		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000493826	ENST00000447025		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000493826	ENST00000414362		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-intron	ENST00000493826	ENST00000468976		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000482794	ENST00000328913		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000482794	ENST00000473233		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000482794	ENST00000447025		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-3CDS	ENST00000482794	ENST00000414362		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
intron-intron	ENST00000482794	ENST00000468976		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ATP11B	chr3	182631782	+	MCF2L2	chr3	182994745	-
5UTR-3CDS	ENST00000296824	ENST00000264932		TCGA	RV	LUSC	TCGA-96-7544-01A	CCDC127	chr5	218208	-	SDHA	chr5	223597	+
5UTR-3CDS	ENST00000296824	ENST00000504309		TCGA	RV	LUSC	TCGA-96-7544-01A	CCDC127	chr5	218208	-	SDHA	chr5	223597	+
5UTR-3CDS	ENST00000296824	ENST00000510361		TCGA	RV	LUSC	TCGA-96-7544-01A	CCDC127	chr5	218208	-	SDHA	chr5	223597	+
5UTR-intron	ENST00000296824	ENST00000507522		TCGA	RV	LUSC	TCGA-96-7544-01A	CCDC127	chr5	218208	-	SDHA	chr5	223597	+
Frame-shit	ENST00000392347	ENST00000398519		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000392347	ENST00000314028		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000392347	ENST00000392334		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
5CDS-5UTR	ENST00000392347	ENST00000578904		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000389641	ENST00000398519		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000389641	ENST00000314028		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000389641	ENST00000392334		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
5CDS-5UTR	ENST00000389641	ENST00000578904		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000392346	ENST00000398519		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000392346	ENST00000314028		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
Frame-shit	ENST00000392346	ENST00000392334		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
5CDS-5UTR	ENST00000392346	ENST00000578904		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-3CDS	ENST00000327026	ENST00000398519		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-3CDS	ENST00000327026	ENST00000314028		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-3CDS	ENST00000327026	ENST00000392334		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-5UTR	ENST00000327026	ENST00000578904		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-3CDS	ENST00000392343	ENST00000398519		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-3CDS	ENST00000392343	ENST00000314028		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-3CDS	ENST00000392343	ENST00000392334		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
intron-5UTR	ENST00000392343	ENST00000578904		TCGA	RV	LUSC	TCGA-21-A5DI-01A	CCDC57	chr17	80085568	-	CSNK1D	chr17	80211120	-
In-frame	ENST00000398970	ENST00000306357		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
In-frame	ENST00000398970	ENST00000574431		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
5CDS-intron	ENST00000398970	ENST00000573373		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
In-frame	ENST00000300574	ENST00000306357		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
In-frame	ENST00000300574	ENST00000574431		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
5CDS-intron	ENST00000300574	ENST00000573373		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
In-frame	ENST00000574295	ENST00000306357		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
In-frame	ENST00000574295	ENST00000574431		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
5CDS-intron	ENST00000574295	ENST00000573373		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
intron-3CDS	ENST00000572145	ENST00000306357		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
intron-3CDS	ENST00000572145	ENST00000574431		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
intron-intron	ENST00000572145	ENST00000573373		TCGA	RV	LUSC	TCGA-85-A4CN-01A	CRK	chr17	1359171	-	STX8	chr17	9153962	-
intron-3CDS	ENST00000471014	ENST00000451292		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000471014	ENST00000377797		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000471014	ENST00000445265		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000471014	ENST00000323668		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000471014	ENST00000439160		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000471014	ENST00000394269		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000471014	ENST00000504761		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000471014	ENST00000513346		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000471014	ENST00000506063		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000405570	ENST00000451292		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000405570	ENST00000377797		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000405570	ENST00000445265		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000405570	ENST00000323668		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000405570	ENST00000439160		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000405570	ENST00000394269		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000405570	ENST00000504761		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000405570	ENST00000513346		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000405570	ENST00000506063		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396183	ENST00000451292		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396183	ENST00000377797		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396183	ENST00000445265		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396183	ENST00000323668		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396183	ENST00000439160		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396183	ENST00000394269		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396183	ENST00000504761		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396183	ENST00000513346		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396183	ENST00000506063		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000349496	ENST00000451292		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000349496	ENST00000377797		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000349496	ENST00000445265		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000349496	ENST00000323668		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
Frame-shit	ENST00000349496	ENST00000439160		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000349496	ENST00000394269		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000349496	ENST00000504761		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000349496	ENST00000513346		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000349496	ENST00000506063		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453024	ENST00000451292		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453024	ENST00000377797		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453024	ENST00000445265		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453024	ENST00000323668		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-3CDS	ENST00000453024	ENST00000439160		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000453024	ENST00000394269		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000453024	ENST00000504761		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000453024	ENST00000513346		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
intron-intron	ENST00000453024	ENST00000506063		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396185	ENST00000451292		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396185	ENST00000377797		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396185	ENST00000445265		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396185	ENST00000323668		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000396185	ENST00000439160		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396185	ENST00000394269		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396185	ENST00000504761		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396185	ENST00000513346		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
5CDS-intron	ENST00000396185	ENST00000506063		TCGA	RV	LUSC	TCGA-L3-A524-01A	CTNNB1	chr3	41281934	+	TCOF1	chr5	149777917	+
In-frame	ENST00000310974	ENST00000274695		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
In-frame	ENST00000310974	ENST00000378624		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
In-frame	ENST00000310974	ENST00000378610		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
5CDS-intron	ENST00000310974	ENST00000476517		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000462134	ENST00000274695		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000462134	ENST00000378624		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000462134	ENST00000378610		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
intron-intron	ENST00000462134	ENST00000476517		TCGA	RV	LUSC	TCGA-21-5787-01A	DPY19L1	chr7	35029496	-	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000478654	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000478654	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000478654	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000478654	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000460911	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000460911	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000460911	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000460911	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000350995	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000350995	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000350995	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000350995	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000320356	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000320356	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000320356	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000320356	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000541220	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000541220	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000541220	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000541220	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000476773	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000476773	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000476773	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000476773	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000483967	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000483967	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000483967	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000483967	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5UTR-3CDS	ENST00000536783	ENST00000406775		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5UTR-3CDS	ENST00000536783	ENST00000342771		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5UTR-intron	ENST00000536783	ENST00000403018		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
5UTR-intron	ENST00000536783	ENST00000489774		TCGA	RV	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543562	-	AUTS2	chr7	70227856	+
In-frame	ENST00000258729	ENST00000413366		TCGA	RV	LUSC	TCGA-33-4587-01A	IGF2BP3	chr7	23381683	-	PRKCA	chr17	64637473	+
5CDS-intron	ENST00000258729	ENST00000583361		TCGA	RV	LUSC	TCGA-33-4587-01A	IGF2BP3	chr7	23381683	-	PRKCA	chr17	64637473	+
intron-3CDS	ENST00000491719	ENST00000413366		TCGA	RV	LUSC	TCGA-33-4587-01A	IGF2BP3	chr7	23381683	-	PRKCA	chr17	64637473	+
intron-intron	ENST00000491719	ENST00000583361		TCGA	RV	LUSC	TCGA-33-4587-01A	IGF2BP3	chr7	23381683	-	PRKCA	chr17	64637473	+
intron-3CDS	ENST00000579662	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000579662	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
In-frame	ENST00000339591	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
In-frame	ENST00000339591	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
Frame-shit	ENST00000200181	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
Frame-shit	ENST00000200181	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
Frame-shit	ENST00000450894	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
Frame-shit	ENST00000450894	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
Frame-shit	ENST00000449880	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
Frame-shit	ENST00000449880	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000584558	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
intron-3CDS	ENST00000584558	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A50M-01A	ITGB4	chr17	73753898	+	PTN	chr7	136938384	-
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000354476	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000390003	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000418533	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000402934	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000404525	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000407925	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	LUSC	TCGA-94-8491-01A	LTBP1	chr2	33624426	+	BIRC6	chr2	32820101	+
In-frame	ENST00000315588	ENST00000265707		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
In-frame	ENST00000315588	ENST00000379866		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-intron	ENST00000315588	ENST00000520772		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-intron	ENST00000315588	ENST00000541111		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-3UTR	ENST00000315588	ENST00000523755		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
In-frame	ENST00000594368	ENST00000265707		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
In-frame	ENST00000594368	ENST00000379866		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-intron	ENST00000594368	ENST00000520772		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-intron	ENST00000594368	ENST00000541111		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-3UTR	ENST00000594368	ENST00000523755		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
In-frame	ENST00000599213	ENST00000265707		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
In-frame	ENST00000599213	ENST00000379866		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-intron	ENST00000599213	ENST00000520772		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-intron	ENST00000599213	ENST00000541111		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
5CDS-3UTR	ENST00000599213	ENST00000523755		TCGA	RV	LUSC	TCGA-85-7843-01A	MED29	chr19	39884277	+	ADAM18	chr8	39550119	+
intron-3CDS	ENST00000609205	ENST00000334128		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
intron-3CDS	ENST00000609205	ENST00000428798		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
intron-3CDS	ENST00000609205	ENST00000382489		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
intron-3CDS	ENST00000609205	ENST00000453435		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
In-frame	ENST00000360270	ENST00000334128		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
In-frame	ENST00000360270	ENST00000428798		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
In-frame	ENST00000360270	ENST00000382489		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
In-frame	ENST00000360270	ENST00000453435		TCGA	RV	LUSC	TCGA-56-5898-01A	MSN	chrX	64887720	+	HTR3D	chr3	183755809	+
5UTR-3CDS	ENST00000545708	ENST00000304623		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000545708	ENST00000359640		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000545708	ENST00000511377		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000545708	ENST00000458100		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000545708	ENST00000503622		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-5UTR	ENST00000545708	ENST00000495388		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000540243	ENST00000304623		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000540243	ENST00000359640		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000540243	ENST00000511377		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000540243	ENST00000458100		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000540243	ENST00000503622		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5UTR-5UTR	ENST00000540243	ENST00000495388		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370298	ENST00000304623		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370298	ENST00000359640		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370298	ENST00000511377		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370298	ENST00000458100		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370298	ENST00000503622		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5CDS-5UTR	ENST00000370298	ENST00000495388		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
3UTR-3CDS	ENST00000471953	ENST00000304623		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
3UTR-3CDS	ENST00000471953	ENST00000359640		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
3UTR-3CDS	ENST00000471953	ENST00000511377		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
3UTR-3CDS	ENST00000471953	ENST00000458100		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
3UTR-3CDS	ENST00000471953	ENST00000503622		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
3UTR-5UTR	ENST00000471953	ENST00000495388		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370303	ENST00000304623		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370303	ENST00000359640		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370303	ENST00000511377		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370303	ENST00000458100		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
Frame-shit	ENST00000370303	ENST00000503622		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
5CDS-5UTR	ENST00000370303	ENST00000495388		TCGA	RV	LUSC	TCGA-46-3765-01A	MTF2	chr1	93545088	+	CTNND2	chr5	11199773	-
In-frame	ENST00000454872	ENST00000265594		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
In-frame	ENST00000454872	ENST00000492597		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
In-frame	ENST00000454872	ENST00000539926		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
5CDS-intron	ENST00000454872	ENST00000489909		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
intron-3CDS	ENST00000473253	ENST00000265594		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
intron-3CDS	ENST00000473253	ENST00000492597		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
intron-3CDS	ENST00000473253	ENST00000539926		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
intron-intron	ENST00000473253	ENST00000489909		TCGA	RV	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182755222	-
In-frame	ENST00000361175	ENST00000317361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000361175	ENST00000399767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000361175	ENST00000399774		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000361175	ENST00000399765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000361175	ENST00000342111		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000361175	ENST00000551952		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000361175	ENST00000473439		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
In-frame	ENST00000456849	ENST00000317361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000456849	ENST00000399767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000456849	ENST00000399774		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000456849	ENST00000399765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000456849	ENST00000342111		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000456849	ENST00000551952		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000456849	ENST00000473439		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
In-frame	ENST00000427144	ENST00000317361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000427144	ENST00000399767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000427144	ENST00000399774		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000427144	ENST00000399765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000427144	ENST00000342111		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000427144	ENST00000551952		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
5CDS-5UTR	ENST00000427144	ENST00000473439		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-3CDS	ENST00000482258	ENST00000317361		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-5UTR	ENST00000482258	ENST00000399767		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-5UTR	ENST00000482258	ENST00000399774		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-5UTR	ENST00000482258	ENST00000399765		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-5UTR	ENST00000482258	ENST00000342111		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-5UTR	ENST00000482258	ENST00000551952		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
3UTR-5UTR	ENST00000482258	ENST00000473439		TCGA	RV	LUSC	TCGA-77-A5GH-01A	PAPSS2	chr10	89469070	+	BID	chr22	18222254	-
In-frame	ENST00000378641	ENST00000373664		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
In-frame	ENST00000378641	ENST00000344359		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
5CDS-intron	ENST00000378641	ENST00000598590		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
In-frame	ENST00000338037	ENST00000373664		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
In-frame	ENST00000338037	ENST00000344359		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
5CDS-intron	ENST00000338037	ENST00000598590		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
In-frame	ENST00000378637	ENST00000373664		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
In-frame	ENST00000378637	ENST00000344359		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
5CDS-intron	ENST00000378637	ENST00000598590		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
intron-3CDS	ENST00000494924	ENST00000373664		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
intron-3CDS	ENST00000494924	ENST00000344359		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
intron-intron	ENST00000494924	ENST00000598590		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8131018	+	RBL1	chr20	35651229	-
In-frame	ENST00000312989	ENST00000261475		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
In-frame	ENST00000312989	ENST00000555644		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000532446	ENST00000261475		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000532446	ENST00000555644		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000376745	ENST00000261475		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000376745	ENST00000555644		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000358239	ENST00000261475		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
intron-3CDS	ENST00000358239	ENST00000555644		TCGA	RV	LUSC	TCGA-98-A53A-01A	PPP1CA	chr11	67165654	-	PPP2R3C	chr14	35585943	-
Frame-shit	ENST00000382298	ENST00000382172		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
5CDS-intron	ENST00000382298	ENST00000469167		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
intron-3CDS	ENST00000402364	ENST00000382172		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
intron-intron	ENST00000402364	ENST00000469167		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
Frame-shit	ENST00000382292	ENST00000382172		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
5CDS-intron	ENST00000382292	ENST00000469167		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
intron-3CDS	ENST00000476776	ENST00000382172		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
intron-intron	ENST00000476776	ENST00000469167		TCGA	RV	LUSC	TCGA-46-3767-01A	SACS	chr13	23985359	-	MIPEP	chr13	24415627	-
5CDS-intron	ENST00000256190	ENST00000424001		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-intron	ENST00000256190	ENST00000436272		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000545852		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000421747		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000552103		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000547195		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000423302		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-intron	ENST00000256190	ENST00000558540		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-intron	ENST00000256190	ENST00000541483		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-intron	ENST00000256190	ENST00000531107		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000527509		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000534266		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5CDS-5UTR	ENST00000256190	ENST00000532037		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-intron	ENST00000527019	ENST00000424001		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-intron	ENST00000527019	ENST00000436272		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000545852		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000421747		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000552103		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000547195		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000423302		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-intron	ENST00000527019	ENST00000558540		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-intron	ENST00000527019	ENST00000541483		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-intron	ENST00000527019	ENST00000531107		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000527509		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000534266		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
intron-5UTR	ENST00000527019	ENST00000532037		TCGA	RV	LUSC	TCGA-66-2744-01A	SBF2	chr11	10215449	-	MRVI1	chr11	10655618	-
5UTR-5UTR	ENST00000413852	ENST00000442092		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5UTR-5UTR	ENST00000413852	ENST00000266022		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5UTR-5UTR	ENST00000413852	ENST00000443081		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5UTR-intron	ENST00000413852	ENST00000539992		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5UTR-3UTR	ENST00000413852	ENST00000441115		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5UTR-5UTR	ENST00000413852	ENST00000422955		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5UTR-intron	ENST00000413852	ENST00000421682		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000442092		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000266022		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000443081		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000002829	ENST00000539992		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000002829	ENST00000441115		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000002829	ENST00000422955		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000002829	ENST00000421682		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000434342	ENST00000442092		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000434342	ENST00000266022		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000434342	ENST00000443081		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000434342	ENST00000539992		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000434342	ENST00000441115		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000434342	ENST00000422955		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000434342	ENST00000421682		TCGA	RV	LUSC	TCGA-37-4135-01A	SEMA3F	chr3	50197167	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000393469	ENST00000371440		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000393469	ENST00000371435		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000393469	ENST00000395961		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000393469	ENST00000434986		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000393469	ENST00000411563		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000423114	ENST00000371440		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000423114	ENST00000371435		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000423114	ENST00000395961		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000423114	ENST00000434986		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000423114	ENST00000411563		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000469902	ENST00000371440		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000469902	ENST00000371435		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000469902	ENST00000395961		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000469902	ENST00000434986		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5CDS-intron	ENST00000469902	ENST00000411563		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5UTR-intron	ENST00000314584	ENST00000371440		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5UTR-intron	ENST00000314584	ENST00000371435		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5UTR-intron	ENST00000314584	ENST00000395961		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5UTR-intron	ENST00000314584	ENST00000434986		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
5UTR-intron	ENST00000314584	ENST00000411563		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000430155	ENST00000371440		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000430155	ENST00000371435		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000430155	ENST00000395961		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000430155	ENST00000434986		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000430155	ENST00000411563		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000465475	ENST00000371440		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000465475	ENST00000371435		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000465475	ENST00000395961		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000465475	ENST00000434986		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
intron-intron	ENST00000465475	ENST00000411563		TCGA	RV	LUSC	TCGA-22-1016-01A	SLC12A8	chr3	124854513	-	BCAS1	chr20	52591969	-
Frame-shit	ENST00000446041	ENST00000467460		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000446041	ENST00000263962		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000446041	ENST00000392649		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000446041	ENST00000485199		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000446041	ENST00000468741		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000446041	ENST00000476138		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000446041	ENST00000467440		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000446041	ENST00000472994		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000446041	ENST00000464614		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000446041	ENST00000465751		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-3CDS	ENST00000393015	ENST00000467460		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-3CDS	ENST00000393015	ENST00000263962		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-3CDS	ENST00000393015	ENST00000392649		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-3CDS	ENST00000393015	ENST00000485199		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-3CDS	ENST00000393015	ENST00000468741		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-3CDS	ENST00000393015	ENST00000476138		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-5UTR	ENST00000393015	ENST00000467440		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-5UTR	ENST00000393015	ENST00000472994		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-5UTR	ENST00000393015	ENST00000464614		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
3UTR-5UTR	ENST00000393015	ENST00000465751		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000507429	ENST00000467460		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000507429	ENST00000263962		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000507429	ENST00000392649		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000507429	ENST00000485199		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000507429	ENST00000468741		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000507429	ENST00000476138		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000507429	ENST00000467440		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000507429	ENST00000472994		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000507429	ENST00000464614		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000507429	ENST00000465751		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000324194	ENST00000467460		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000324194	ENST00000263962		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000324194	ENST00000392649		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000324194	ENST00000485199		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000324194	ENST00000468741		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000324194	ENST00000476138		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000324194	ENST00000467440		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000324194	ENST00000472994		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000324194	ENST00000464614		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000324194	ENST00000465751		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000453248	ENST00000467460		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000453248	ENST00000263962		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000453248	ENST00000392649		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000453248	ENST00000485199		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000453248	ENST00000468741		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000453248	ENST00000476138		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000453248	ENST00000467440		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000453248	ENST00000472994		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000453248	ENST00000464614		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
5CDS-5UTR	ENST00000453248	ENST00000465751		TCGA	RV	LUSC	TCGA-85-6175-01A	SLC25A36	chr3	140660937	+	PEX5L	chr3	179533792	-
Frame-shit	ENST00000219476	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000219476	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000219476	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000382538	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000382538	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000382538	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000401874	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000401874	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000401874	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000353929	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000353929	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000353929	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000439673	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000439673	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000439673	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000350773	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000350773	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000350773	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000568454	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
Frame-shit	ENST00000568454	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-intron	ENST00000568454	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
intron-3CDS	ENST00000568366	ENST00000250894		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
intron-3CDS	ENST00000568366	ENST00000356010		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
intron-intron	ENST00000568366	ENST00000568271		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	TSC2	chr16	2136872	+	MAPK8IP3	chr16	1809959	+
5CDS-5UTR	ENST00000211998	ENST00000372292		TCGA	RV	LUSC	TCGA-43-6770-01A	VCL	chr10	75834661	+	SFTPD	chr10	81706418	-
5CDS-5UTR	ENST00000372755	ENST00000372292		TCGA	RV	LUSC	TCGA-43-6770-01A	VCL	chr10	75834661	+	SFTPD	chr10	81706418	-
intron-5UTR	ENST00000478896	ENST00000372292		TCGA	RV	LUSC	TCGA-43-6770-01A	VCL	chr10	75834661	+	SFTPD	chr10	81706418	-
intron-5UTR	ENST00000417648	ENST00000372292		TCGA	RV	LUSC	TCGA-43-6770-01A	VCL	chr10	75834661	+	SFTPD	chr10	81706418	-
5CDS-intron	ENST00000437048	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000437048	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000437048	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000437048	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000574029	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000574029	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
intron-intron	ENST00000574029	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
intron-5UTR	ENST00000574029	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000576149	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000576149	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5UTR-intron	ENST00000576149	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5UTR-5UTR	ENST00000576149	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000446250	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000446250	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000446250	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000446250	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000291074	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000291074	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000571805	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000571805	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000575800		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000301329		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-intron	ENST00000401468	ENST00000301328		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000401468	ENST00000536578		TCGA	RV	LUSC	TCGA-98-A53C-01A	VPS53	chr17	505035	-	GLOD4	chr17	681984	-
5CDS-5UTR	ENST00000535787	ENST00000392259		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000535787	ENST00000392266		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000535787	ENST00000264274		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000535787	ENST00000432109		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000535787	ENST00000264275		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000535787	ENST00000392258		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000535787	ENST00000490682		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000535787	ENST00000358485		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000535787	ENST00000323492		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000241416	ENST00000392259		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000241416	ENST00000392266		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000241416	ENST00000264274		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000241416	ENST00000432109		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000241416	ENST00000264275		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000241416	ENST00000392258		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000241416	ENST00000490682		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000241416	ENST00000358485		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000241416	ENST00000323492		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000404590	ENST00000392259		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000404590	ENST00000392266		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000404590	ENST00000264274		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000404590	ENST00000432109		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000404590	ENST00000264275		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000404590	ENST00000392258		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000404590	ENST00000490682		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-intron	ENST00000404590	ENST00000358485		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
5CDS-5UTR	ENST00000404590	ENST00000323492		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000495775	ENST00000392259		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000495775	ENST00000392266		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000495775	ENST00000264274		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-intron	ENST00000495775	ENST00000432109		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000495775	ENST00000264275		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000495775	ENST00000392258		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-intron	ENST00000495775	ENST00000490682		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-intron	ENST00000495775	ENST00000358485		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
intron-5UTR	ENST00000495775	ENST00000323492		TCGA	RV	LUSC	TCGA-21-1082-01A	ACVR2A	chr2	148674995	+	CASP8	chr2	202131184	+
In-frame	ENST00000556611	ENST00000281081		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000556611	ENST00000536705		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
5CDS-intron	ENST00000556611	ENST00000418681		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000539826	ENST00000281081		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000539826	ENST00000536705		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
5CDS-intron	ENST00000539826	ENST00000418681		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
intron-3CDS	ENST00000396582	ENST00000281081		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
intron-3CDS	ENST00000396582	ENST00000536705		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
intron-intron	ENST00000396582	ENST00000418681		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000432921	ENST00000281081		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000432921	ENST00000536705		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
5CDS-intron	ENST00000432921	ENST00000418681		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000345122	ENST00000281081		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000345122	ENST00000536705		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
5CDS-intron	ENST00000345122	ENST00000418681		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000433497	ENST00000281081		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
In-frame	ENST00000433497	ENST00000536705		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
5CDS-intron	ENST00000433497	ENST00000418681		TCGA	RV	LUSC	TCGA-66-2795-01A	ARHGAP5	chr14	32586493	+	NUBPL	chr14	32142561	+
intron-3CDS	ENST00000388890	ENST00000264935		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-3UTR	ENST00000388890	ENST00000444221		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-intron	ENST00000388890	ENST00000514507		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-3CDS	ENST00000323510	ENST00000264935		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-3UTR	ENST00000323510	ENST00000444221		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-intron	ENST00000323510	ENST00000514507		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
Frame-shit	ENST00000483173	ENST00000264935		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5CDS-3UTR	ENST00000483173	ENST00000444221		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5CDS-intron	ENST00000483173	ENST00000514507		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
In-frame	ENST00000467963	ENST00000264935		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5CDS-3UTR	ENST00000467963	ENST00000444221		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5CDS-intron	ENST00000467963	ENST00000514507		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5UTR-3CDS	ENST00000435709	ENST00000264935		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5UTR-3UTR	ENST00000435709	ENST00000444221		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
5UTR-intron	ENST00000435709	ENST00000514507		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-3CDS	ENST00000494422	ENST00000264935		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-3UTR	ENST00000494422	ENST00000444221		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
intron-intron	ENST00000494422	ENST00000514507		TCGA	RV	LUSC	TCGA-90-6837-01A	BRD9	chr5	891270	-	CEP72	chr5	647920	+
In-frame	ENST00000455089	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000455089	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000455089	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000455089	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000455089	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-5UTR	ENST00000455089	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000455089	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000342916	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000342916	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000342916	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000342916	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000342916	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-5UTR	ENST00000342916	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000342916	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000344576	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000344576	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000344576	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000344576	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000344576	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-5UTR	ENST00000344576	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000344576	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000420316	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000420316	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000420316	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000420316	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000420316	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-5UTR	ENST00000420316	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000420316	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000275493	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000275493	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000275493	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000275493	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000275493	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-5UTR	ENST00000275493	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000275493	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000442591	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000442591	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000442591	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000442591	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
In-frame	ENST00000442591	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-5UTR	ENST00000442591	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000442591	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-3CDS	ENST00000463948	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-3CDS	ENST00000463948	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-3CDS	ENST00000463948	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-3CDS	ENST00000463948	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-3CDS	ENST00000463948	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-5UTR	ENST00000463948	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
3UTR-intron	ENST00000463948	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-3CDS	ENST00000454757	ENST00000598810		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-3CDS	ENST00000454757	ENST00000593945		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-3CDS	ENST00000454757	ENST00000601519		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-3CDS	ENST00000454757	ENST00000311227		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-3CDS	ENST00000454757	ENST00000377214		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-5UTR	ENST00000454757	ENST00000539846		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
intron-intron	ENST00000454757	ENST00000598397		TCGA	RV	LUSC	TCGA-85-8351-01A	EGFR	chr7	55087058	+	TEAD2	chr19	49862756	-
5CDS-intron	ENST00000262809	ENST00000594325		TCGA	RV	LUSC	TCGA-60-2706-01A	ELL	chr19	18632731	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000262809	ENST00000392386		TCGA	RV	LUSC	TCGA-60-2706-01A	ELL	chr19	18632731	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000596124	ENST00000594325		TCGA	RV	LUSC	TCGA-60-2706-01A	ELL	chr19	18632731	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000596124	ENST00000392386		TCGA	RV	LUSC	TCGA-60-2706-01A	ELL	chr19	18632731	-	CRLF1	chr19	18710656	-
Frame-shit	ENST00000234590	ENST00000356136		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
Frame-shit	ENST00000234590	ENST00000528420		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000234590	ENST00000533454		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000234590	ENST00000531818		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000234590	ENST00000532130		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000234590	ENST00000539288		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000234590	ENST00000525872		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000234590	ENST00000538870		TCGA	RV	LUSC	TCGA-77-8009-01A	ENO1	chr1	8921061	-	UVRAG	chr11	75694431	+
In-frame	ENST00000533608	ENST00000322396		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
5CDS-intron	ENST00000533608	ENST00000541232		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
In-frame	ENST00000358681	ENST00000322396		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
5CDS-intron	ENST00000358681	ENST00000541232		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
In-frame	ENST00000395673	ENST00000322396		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
5CDS-intron	ENST00000395673	ENST00000541232		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
In-frame	ENST00000343631	ENST00000322396		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
5CDS-intron	ENST00000343631	ENST00000541232		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
intron-3CDS	ENST00000529186	ENST00000322396		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
intron-intron	ENST00000529186	ENST00000541232		TCGA	RV	LUSC	TCGA-85-8354-01A	EXT2	chr11	44151688	+	PRMT10	chr4	148601622	-
Frame-shit	ENST00000372396	ENST00000447098		TCGA	RV	LUSC	TCGA-98-8022-01A	KDM4A	chr1	44137546	+	PTCH2	chr1	45286376	-
5CDS-intron	ENST00000372396	ENST00000372192		TCGA	RV	LUSC	TCGA-98-8022-01A	KDM4A	chr1	44137546	+	PTCH2	chr1	45286376	-
intron-3CDS	ENST00000463151	ENST00000447098		TCGA	RV	LUSC	TCGA-98-8022-01A	KDM4A	chr1	44137546	+	PTCH2	chr1	45286376	-
intron-intron	ENST00000463151	ENST00000372192		TCGA	RV	LUSC	TCGA-98-8022-01A	KDM4A	chr1	44137546	+	PTCH2	chr1	45286376	-
5CDS-intron	ENST00000397885	ENST00000380950		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
5CDS-intron	ENST00000397885	ENST00000399334		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
5CDS-intron	ENST00000397885	ENST00000325747		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
5CDS-intron	ENST00000397885	ENST00000559398		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
intron-intron	ENST00000469168	ENST00000380950		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
intron-intron	ENST00000469168	ENST00000399334		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
intron-intron	ENST00000469168	ENST00000325747		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
intron-intron	ENST00000469168	ENST00000559398		TCGA	RV	LUSC	TCGA-77-7141-01A	KIAA0020	chr9	2804164	-	CEP152	chr15	49057864	-
Frame-shit	ENST00000375772	ENST00000221700		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000375772	ENST00000011989		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000375722	ENST00000221700		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000375722	ENST00000011989		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000326587	ENST00000221700		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000326587	ENST00000011989		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000375695	ENST00000221700		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000375695	ENST00000011989		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
3UTR-3CDS	ENST00000494718	ENST00000221700		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
3UTR-5UTR	ENST00000494718	ENST00000011989		TCGA	RV	LUSC	TCGA-22-A5C4-01A	MAGED1	chrX	51643392	+	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000265594	ENST00000286744		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
Frame-shit	ENST00000265594	ENST00000567476		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
5CDS-intron	ENST00000265594	ENST00000567716		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
intron-3CDS	ENST00000492597	ENST00000286744		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
intron-3CDS	ENST00000492597	ENST00000567476		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
intron-intron	ENST00000492597	ENST00000567716		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
5UTR-3CDS	ENST00000539926	ENST00000286744		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
5UTR-3CDS	ENST00000539926	ENST00000567476		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
5UTR-intron	ENST00000539926	ENST00000567716		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
intron-3CDS	ENST00000489909	ENST00000286744		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
intron-3CDS	ENST00000489909	ENST00000567476		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
intron-intron	ENST00000489909	ENST00000567716		TCGA	RV	LUSC	TCGA-46-3765-01A	MCCC1	chr3	182817140	-	ADAMTSL3	chr15	84558861	+
In-frame	ENST00000441750	ENST00000381341		TCGA	RV	LUSC	TCGA-85-6561-01A	NBAS	chr2	15467874	-	DDX1	chr2	15735269	+
In-frame	ENST00000441750	ENST00000233084		TCGA	RV	LUSC	TCGA-85-6561-01A	NBAS	chr2	15467874	-	DDX1	chr2	15735269	+
In-frame	ENST00000281513	ENST00000381341		TCGA	RV	LUSC	TCGA-85-6561-01A	NBAS	chr2	15467874	-	DDX1	chr2	15735269	+
In-frame	ENST00000281513	ENST00000233084		TCGA	RV	LUSC	TCGA-85-6561-01A	NBAS	chr2	15467874	-	DDX1	chr2	15735269	+
In-frame	ENST00000330579	ENST00000388887		TCGA	RV	LUSC	TCGA-34-5232-01A	NOC4L	chr12	132633440	+	STAB2	chr12	104142741	+
3UTR-3CDS	ENST00000535343	ENST00000388887		TCGA	RV	LUSC	TCGA-34-5232-01A	NOC4L	chr12	132633440	+	STAB2	chr12	104142741	+
intron-3CDS	ENST00000538784	ENST00000388887		TCGA	RV	LUSC	TCGA-34-5232-01A	NOC4L	chr12	132633440	+	STAB2	chr12	104142741	+
5CDS-intron	ENST00000354179	ENST00000506693		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000358149		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000512315		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000503425		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000261948		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000511834		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000503039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000506693		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000358149		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000512315		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000503425		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000261948		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000511834		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000503039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000506693		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000358149		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000512315		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000503425		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000261948		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000511834		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000503039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000506693		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000358149		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000512315		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000503425		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000261948		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000511834		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000503039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000506693		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000358149		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000512315		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000503425		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000261948		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000511834		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000503039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	NSD1	chr5	176696808	+	ZNF346	chr5	176468127	+
Frame-shit	ENST00000356607	ENST00000367484		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
Frame-shit	ENST00000356607	ENST00000367486		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
Frame-shit	ENST00000356607	ENST00000367485		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
Frame-shit	ENST00000356607	ENST00000367483		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
Frame-shit	ENST00000356607	ENST00000445192		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
5UTR-3CDS	ENST00000538836	ENST00000367484		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
5UTR-3CDS	ENST00000538836	ENST00000367486		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
5UTR-3CDS	ENST00000538836	ENST00000367485		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
5UTR-3CDS	ENST00000538836	ENST00000367483		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
5UTR-3CDS	ENST00000538836	ENST00000445192		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
intron-3CDS	ENST00000492696	ENST00000367484		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
intron-3CDS	ENST00000492696	ENST00000367486		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
intron-3CDS	ENST00000492696	ENST00000367485		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
intron-3CDS	ENST00000492696	ENST00000367483		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
intron-3CDS	ENST00000492696	ENST00000445192		TCGA	RV	LUSC	TCGA-63-A5MH-01A	PEX14	chr1	10555378	+	PRG4	chr1	186281901	+
In-frame	ENST00000253925	ENST00000255087		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
5CDS-5UTR	ENST00000253925	ENST00000540869		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
5CDS-5UTR	ENST00000253925	ENST00000443940		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
5CDS-5UTR	ENST00000253925	ENST00000544963		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
In-frame	ENST00000389547	ENST00000255087		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
5CDS-5UTR	ENST00000389547	ENST00000540869		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
5CDS-5UTR	ENST00000389547	ENST00000443940		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
5CDS-5UTR	ENST00000389547	ENST00000544963		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
intron-3CDS	ENST00000530548	ENST00000255087		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
intron-5UTR	ENST00000530548	ENST00000540869		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
intron-5UTR	ENST00000530548	ENST00000443940		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
intron-5UTR	ENST00000530548	ENST00000544963		TCGA	RV	LUSC	TCGA-63-A5M9-01A	PPFIA1	chr11	70208594	+	MTL5	chr11	68506256	-
Frame-shit	ENST00000267163	ENST00000316939		TCGA	RV	LUSC	TCGA-52-7809-01A	RB1	chr13	48955579	+	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000484879	ENST00000316939		TCGA	RV	LUSC	TCGA-52-7809-01A	RB1	chr13	48955579	+	GADD45GIP1	chr19	13065340	-
5UTR-3CDS	ENST00000359511	ENST00000355014		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368285		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368284		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368286		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368282		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3UTR	ENST00000359511	ENST00000487358		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000355014		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368285		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368284		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368286		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368282		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3UTR	ENST00000423538	ENST00000487358		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000355014		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368285		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368284		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368286		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368282		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3UTR	ENST00000469537	ENST00000487358		TCGA	RV	LUSC	TCGA-O2-A52Q-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000452201	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000452201	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-intron	ENST00000452201	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000398417	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-intron	ENST00000398417	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000342988	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
5UTR-intron	ENST00000342988	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000588745	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-intron	ENST00000588745	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000519301		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000520407		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000523079		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000338921		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000356819		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000287845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000341377		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000287842		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000521670		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000405005		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000520502		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-3CDS	ENST00000586253	ENST00000539990		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
intron-intron	ENST00000586253	ENST00000523681		TCGA	RV	LUSC	TCGA-63-A5MP-01A	SMAD4	chr18	48556993	+	NRG1	chr8	32585467	+
In-frame	ENST00000259075	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000259075	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000259075	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000259075	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000457476	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000457476	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000457476	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000457476	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000392749	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000392749	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000392749	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000392749	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
intron-3CDS	ENST00000461338	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
intron-3CDS	ENST00000461338	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
intron-3CDS	ENST00000461338	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
intron-3UTR	ENST00000461338	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000402568	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000402568	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000402568	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000402568	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000406287	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000406287	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000406287	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000406287	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000405852	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000405852	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000405852	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000405852	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000403609	ENST00000354886		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000403609	ENST00000267488		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
In-frame	ENST00000403609	ENST00000456840		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
5CDS-3UTR	ENST00000403609	ENST00000554304		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	SLC38A6	chr14	61449226	+
intron-3CDS	ENST00000560371	ENST00000282701		TCGA	RV	LUSC	TCGA-39-5030-01A	TRAF3	chr14	103296809	+	BMP3	chr4	81966892	+
5UTR-3CDS	ENST00000347662	ENST00000282701		TCGA	RV	LUSC	TCGA-39-5030-01A	TRAF3	chr14	103296809	+	BMP3	chr4	81966892	+
5UTR-3CDS	ENST00000392745	ENST00000282701		TCGA	RV	LUSC	TCGA-39-5030-01A	TRAF3	chr14	103296809	+	BMP3	chr4	81966892	+
intron-3CDS	ENST00000539721	ENST00000282701		TCGA	RV	LUSC	TCGA-39-5030-01A	TRAF3	chr14	103296809	+	BMP3	chr4	81966892	+
5UTR-3CDS	ENST00000351691	ENST00000282701		TCGA	RV	LUSC	TCGA-39-5030-01A	TRAF3	chr14	103296809	+	BMP3	chr4	81966892	+
5CDS-intron	ENST00000521891	ENST00000216639		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000521891	ENST00000555067		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
intron-intron	ENST00000517683	ENST00000216639		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
intron-intron	ENST00000517683	ENST00000555067		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000050961	ENST00000216639		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000050961	ENST00000555067		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000455469	ENST00000216639		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000455469	ENST00000555067		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000518282	ENST00000216639		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
5CDS-intron	ENST00000518282	ENST00000555067		TCGA	RV	LUSC	TCGA-34-5236-01A	ZFHX4	chr8	77620283	+	VRK1	chr14	97397668	+
In-frame	ENST00000379303	ENST00000379226		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379303	ENST00000476598		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379303	ENST00000379220		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
In-frame	ENST00000336430	ENST00000379226		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000336430	ENST00000476598		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000336430	ENST00000379220		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000379295	ENST00000379226		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379295	ENST00000476598		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000379295	ENST00000379220		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
Frame-shit	ENST00000492081	ENST00000379226		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000492081	ENST00000476598		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-intron	ENST00000492081	ENST00000379220		TCGA	RV	LUSC	TCGA-43-A56U-01A	ACOT9	chrX	23739998	-	APOO	chrX	23899069	-
5CDS-5UTR	ENST00000360265	ENST00000471889		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000360265	ENST00000377479		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000360265	ENST00000289877		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000360265	ENST00000481265		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000358461	ENST00000471889		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000358461	ENST00000377479		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000358461	ENST00000289877		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000358461	ENST00000481265		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000420658	ENST00000471889		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000420658	ENST00000377479		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000420658	ENST00000289877		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000420658	ENST00000481265		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000382543	ENST00000471889		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-5UTR	ENST00000382543	ENST00000377479		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000382543	ENST00000289877		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-intron	ENST00000382543	ENST00000481265		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
intron-5UTR	ENST00000513842	ENST00000471889		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
intron-5UTR	ENST00000513842	ENST00000377479		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
intron-intron	ENST00000513842	ENST00000289877		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
intron-intron	ENST00000513842	ENST00000481265		TCGA	RV	LUSC	TCGA-46-3769-01A	AFAP1	chr4	7802169	-	SLC45A1	chr1	8384366	+
5CDS-3UTR	ENST00000530124	ENST00000531709		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000530124	ENST00000294172		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000530124	ENST00000532297		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-5UTR	ENST00000530124	ENST00000533048		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-intron	ENST00000530124	ENST00000531131		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-intron	ENST00000530124	ENST00000439713		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000257247	ENST00000531709		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000257247	ENST00000294172		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000257247	ENST00000532297		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-5UTR	ENST00000257247	ENST00000533048		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-intron	ENST00000257247	ENST00000531131		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-intron	ENST00000257247	ENST00000439713		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000525875	ENST00000531709		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000525875	ENST00000294172		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000525875	ENST00000532297		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-5UTR	ENST00000525875	ENST00000533048		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-intron	ENST00000525875	ENST00000531131		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-intron	ENST00000525875	ENST00000439713		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000378024	ENST00000531709		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000378024	ENST00000294172		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-3UTR	ENST00000378024	ENST00000532297		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-5UTR	ENST00000378024	ENST00000533048		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-intron	ENST00000378024	ENST00000531131		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
5CDS-intron	ENST00000378024	ENST00000439713		TCGA	RV	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62302475	-	NXF1	chr11	62560173	-
intron-5UTR	ENST00000409869	ENST00000264170		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000409869	ENST00000375773		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000409869	ENST00000409512		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000409869	ENST00000410015		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
5UTR-5UTR	ENST00000295095	ENST00000264170		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
5UTR-5UTR	ENST00000295095	ENST00000375773		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
5UTR-5UTR	ENST00000295095	ENST00000409512		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
5UTR-5UTR	ENST00000295095	ENST00000410015		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000473426	ENST00000264170		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000473426	ENST00000375773		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000473426	ENST00000409512		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-5UTR	ENST00000473426	ENST00000410015		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	ARHGAP15	chr2	143887035	+	KYNU	chr2	143642918	+
intron-3CDS	ENST00000581078	ENST00000476258		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000405458		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000409753		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000482348		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000356033		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000470924		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000481647		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000581078	ENST00000392566		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3UTR	ENST00000581078	ENST00000581874		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-intron	ENST00000581078	ENST00000465454		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000582136	ENST00000476258		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000582136	ENST00000405458		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000582136	ENST00000409753		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000582136	ENST00000482348		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000582136	ENST00000356033		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000582136	ENST00000470924		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000582136	ENST00000481647		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000582136	ENST00000392566		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000582136	ENST00000581874		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
5CDS-intron	ENST00000582136	ENST00000465454		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000245543	ENST00000476258		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000245543	ENST00000405458		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000245543	ENST00000409753		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000245543	ENST00000482348		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000245543	ENST00000356033		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000245543	ENST00000470924		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000245543	ENST00000481647		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000245543	ENST00000392566		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000245543	ENST00000581874		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
5CDS-intron	ENST00000245543	ENST00000465454		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000584947	ENST00000476258		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000584947	ENST00000405458		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000584947	ENST00000409753		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000584947	ENST00000482348		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000584947	ENST00000356033		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000584947	ENST00000470924		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000584947	ENST00000481647		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
Frame-shit	ENST00000584947	ENST00000392566		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000584947	ENST00000581874		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
5CDS-intron	ENST00000584947	ENST00000465454		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000476258		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000405458		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000409753		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000482348		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000356033		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000470924		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000481647		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3CDS	ENST00000579096	ENST00000392566		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-3UTR	ENST00000579096	ENST00000581874		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
intron-intron	ENST00000579096	ENST00000465454		TCGA	RV	LUSC	TCGA-39-5028-01A	ARMC7	chr17	73106701	+	HN1	chr17	73132345	-
In-frame	ENST00000351231	ENST00000434006		TCGA	RV	LUSC	TCGA-66-2756-01A	CDC25A	chr3	48205797	-	SPINK8	chr3	48351436	-
In-frame	ENST00000302506	ENST00000434006		TCGA	RV	LUSC	TCGA-66-2756-01A	CDC25A	chr3	48205797	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000459900	ENST00000434006		TCGA	RV	LUSC	TCGA-66-2756-01A	CDC25A	chr3	48205797	-	SPINK8	chr3	48351436	-
In-frame	ENST00000437600	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000437600	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000437600	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000437600	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000437600	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000437600	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000437600	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000292538	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000292538	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000292538	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000292538	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000292538	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000292538	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000292538	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000393824	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000393824	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000393824	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000393824	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000393824	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000393824	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000393824	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000547394	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000547394	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000547394	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000547394	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000547394	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000547394	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000547394	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000360264	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000360264	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000360264	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000360264	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000360264	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000360264	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000360264	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000425244	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000425244	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000425244	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000425244	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000425244	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000425244	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000425244	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000292535	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000292535	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000292535	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000292535	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000292535	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000292535	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-intron	ENST00000292535	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000549414	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000549414	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000549414	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000549414	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000549414	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000549414	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-intron	ENST00000549414	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000556210	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000556210	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000556210	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000556210	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000556210	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000556210	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-intron	ENST00000556210	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000550008	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000550008	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000550008	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000550008	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000550008	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000550008	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-intron	ENST00000550008	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000546411	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000546411	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000546411	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000546411	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000546411	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000546411	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-intron	ENST00000546411	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000560541	ENST00000325006		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000560541	ENST00000446544		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000560541	ENST00000531335		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000560541	ENST00000474594		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000560541	ENST00000446212		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-3CDS	ENST00000560541	ENST00000490911		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
intron-intron	ENST00000560541	ENST00000472554		TCGA	RV	LUSC	TCGA-22-5480-01A	CUX1	chr7	101459373	+	AHCYL2	chr7	129019482	+
Frame-shit	ENST00000455140	ENST00000595661		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000455140	ENST00000391821		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000455140	ENST00000270617		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000455140	ENST00000445728		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000455140	ENST00000601364		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
Frame-shit	ENST00000248070	ENST00000595661		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000248070	ENST00000391821		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000248070	ENST00000270617		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000248070	ENST00000445728		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000248070	ENST00000601364		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
Frame-shit	ENST00000535753	ENST00000595661		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000535753	ENST00000391821		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000535753	ENST00000270617		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000535753	ENST00000445728		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000535753	ENST00000601364		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
Frame-shit	ENST00000594975	ENST00000595661		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000594975	ENST00000391821		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000594975	ENST00000270617		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000594975	ENST00000445728		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000594975	ENST00000601364		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
Frame-shit	ENST00000602009	ENST00000595661		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000602009	ENST00000391821		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000602009	ENST00000270617		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000602009	ENST00000445728		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000602009	ENST00000601364		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
Frame-shit	ENST00000597937	ENST00000595661		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000597937	ENST00000391821		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000597937	ENST00000270617		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
In-frame	ENST00000597937	ENST00000445728		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000597937	ENST00000601364		TCGA	RV	LUSC	TCGA-56-6545-01A	EPS15L1	chr19	16545176	-	ZNF473	chr19	50547927	+
5CDS-intron	ENST00000361566	ENST00000309364		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000359180		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000317589		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000355397		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000429027		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000539256		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000299275		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000538714		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000543806		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000424268		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000540972		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361566	ENST00000510738		TCGA	RV	LUSC	TCGA-94-A5I4-01A	KRT19	chr17	39679869	-	PLEKHA5	chr12	19441012	+
Frame-shit	ENST00000542728	ENST00000283228		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
Frame-shit	ENST00000542728	ENST00000440835		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000542728	ENST00000537619		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000542728	ENST00000378778		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000542728	ENST00000342084		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000542728	ENST00000549308		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
Frame-shit	ENST00000314565	ENST00000283228		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
Frame-shit	ENST00000314565	ENST00000440835		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000314565	ENST00000537619		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000314565	ENST00000378778		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000314565	ENST00000342084		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000314565	ENST00000549308		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000298571	ENST00000283228		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000298571	ENST00000440835		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000298571	ENST00000537619		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000298571	ENST00000378778		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000298571	ENST00000342084		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000298571	ENST00000549308		TCGA	RV	LUSC	TCGA-85-6175-01A	LOH12CR1	chr12	12514283	+	PTPRR	chr12	71095103	-
5UTR-3CDS	ENST00000337338	ENST00000367334		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
5UTR-3CDS	ENST00000337338	ENST00000367333		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
5UTR-intron	ENST00000337338	ENST00000472411		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
5UTR-intron	ENST00000337338	ENST00000367330		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
5UTR-intron	ENST00000337338	ENST00000367332		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
5UTR-intron	ENST00000337338	ENST00000485839		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-3CDS	ENST00000394593	ENST00000367334		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-3CDS	ENST00000394593	ENST00000367333		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-intron	ENST00000394593	ENST00000472411		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-intron	ENST00000394593	ENST00000367330		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-intron	ENST00000394593	ENST00000367332		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-intron	ENST00000394593	ENST00000485839		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	LRRC8D	chr1	90286850	+	TMEM9	chr1	201115976	-
intron-3CDS	ENST00000502509	ENST00000351193		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-3CDS	ENST00000502509	ENST00000472947		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-3CDS	ENST00000502509	ENST00000460469		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-intron	ENST00000502509	ENST00000478160		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
In-frame	ENST00000264668	ENST00000351193		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
In-frame	ENST00000264668	ENST00000472947		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
In-frame	ENST00000264668	ENST00000460469		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
5CDS-intron	ENST00000264668	ENST00000478160		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-3CDS	ENST00000341013	ENST00000351193		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-3CDS	ENST00000341013	ENST00000472947		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-3CDS	ENST00000341013	ENST00000460469		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
intron-intron	ENST00000341013	ENST00000478160		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
In-frame	ENST00000440940	ENST00000351193		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
In-frame	ENST00000440940	ENST00000472947		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
In-frame	ENST00000440940	ENST00000460469		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
5CDS-intron	ENST00000440940	ENST00000478160		TCGA	RV	LUSC	TCGA-66-2753-01A	MTRR	chr5	7897360	+	NMD3	chr3	160965046	+
Frame-shit	ENST00000278886	ENST00000262460		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
Frame-shit	ENST00000278886	ENST00000429262		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
5CDS-3UTR	ENST00000278886	ENST00000484893		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
Frame-shit	ENST00000422516	ENST00000262460		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
Frame-shit	ENST00000422516	ENST00000429262		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
5CDS-3UTR	ENST00000422516	ENST00000484893		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
intron-3CDS	ENST00000464285	ENST00000262460		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
intron-3CDS	ENST00000464285	ENST00000429262		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
intron-3UTR	ENST00000464285	ENST00000484893		TCGA	RV	LUSC	TCGA-77-7465-01A	NINL	chr20	25507044	-	GINS1	chr20	25397740	+
5CDS-5UTR	ENST00000592782	ENST00000393198		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-5UTR	ENST00000592782	ENST00000608447		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000514264		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000393185		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000513177		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000512737		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000503064		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000393183		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000592782	ENST00000393190		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000393198		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000608447		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000514264		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000393185		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000513177		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000512737		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000503064		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000393183		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
5CDS-intron	ENST00000258960	ENST00000393190		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000393198		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000608447		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000514264		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000393185		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000513177		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000512737		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000503064		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000393183		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
3UTR-intron	ENST00000590114	ENST00000393190		TCGA	RV	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1-NME2	chr17	49233012	+
Frame-shit	ENST00000262879	ENST00000423479		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000608263		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000429804		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000609232		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000243914		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000371196		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000608440		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000262879	ENST00000433949		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000502686		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000432255		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000539382		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000608903		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000608425		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000422869		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000608858		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000608158		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000262879	ENST00000481655		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000423479		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000608263		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000429804		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000609232		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000243914		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000371196		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000608440		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397042	ENST00000433949		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000502686		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000432255		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000539382		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000608903		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000608425		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000422869		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000608858		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000608158		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397042	ENST00000481655		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000423479		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000608263		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000429804		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000609232		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000243914		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000371196		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000608440		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397038	ENST00000433949		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000502686		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000432255		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000539382		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000608903		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000608425		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000422869		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000608858		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000608158		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397038	ENST00000481655		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000423479		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000608263		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000429804		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000609232		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000243914		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000371196		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000608440		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000537204	ENST00000433949		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000502686		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000432255		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000539382		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000608903		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000608425		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000422869		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000608858		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000608158		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000537204	ENST00000481655		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000423479		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000608263		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000429804		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000609232		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000243914		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000371196		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000608440		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
Frame-shit	ENST00000397040	ENST00000433949		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000502686		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000432255		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000539382		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000608903		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000608425		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000422869		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000608858		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000608158		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
5CDS-5UTR	ENST00000397040	ENST00000481655		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000423479		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000608263		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000429804		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000609232		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000243914		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000371196		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000608440		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-3CDS	ENST00000490114	ENST00000433949		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000502686		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000432255		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000539382		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000608903		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000608425		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000422869		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000608858		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000608158		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
intron-5UTR	ENST00000490114	ENST00000481655		TCGA	RV	LUSC	TCGA-85-8664-01A	RALGAPB	chr20	37168601	+	CTCFL	chr20	56094433	-
In-frame	ENST00000305476	ENST00000327896		TCGA	RV	LUSC	TCGA-66-2793-01A	SEMA4C	chr2	97527316	-	FAM178B	chr2	97568444	-
In-frame	ENST00000305476	ENST00000417561		TCGA	RV	LUSC	TCGA-66-2793-01A	SEMA4C	chr2	97527316	-	FAM178B	chr2	97568444	-
In-frame	ENST00000305476	ENST00000490605		TCGA	RV	LUSC	TCGA-66-2793-01A	SEMA4C	chr2	97527316	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000305476	ENST00000393526		TCGA	RV	LUSC	TCGA-66-2793-01A	SEMA4C	chr2	97527316	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000305476	ENST00000470789		TCGA	RV	LUSC	TCGA-66-2793-01A	SEMA4C	chr2	97527316	-	FAM178B	chr2	97568444	-
5CDS-5UTR	ENST00000436008	ENST00000560371		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000436008	ENST00000347662		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000436008	ENST00000392745		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000436008	ENST00000539721		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000436008	ENST00000351691		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000406686	ENST00000560371		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000406686	ENST00000347662		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000406686	ENST00000392745		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000406686	ENST00000539721		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000406686	ENST00000351691		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380302	ENST00000560371		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380302	ENST00000347662		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380302	ENST00000392745		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380302	ENST00000539721		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380302	ENST00000351691		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000490273	ENST00000560371		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000490273	ENST00000347662		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000490273	ENST00000392745		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000490273	ENST00000539721		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000490273	ENST00000351691		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380298	ENST00000560371		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380298	ENST00000347662		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380298	ENST00000392745		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380298	ENST00000539721		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
5CDS-5UTR	ENST00000380298	ENST00000351691		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
intron-5UTR	ENST00000433689	ENST00000560371		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
intron-5UTR	ENST00000433689	ENST00000347662		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
intron-5UTR	ENST00000433689	ENST00000392745		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
intron-5UTR	ENST00000433689	ENST00000539721		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
intron-5UTR	ENST00000433689	ENST00000351691		TCGA	RV	LUSC	TCGA-21-1081-01A	SLC22A23	chr6	3410422	-	TRAF3	chr14	103336522	+
Frame-shit	ENST00000264377	ENST00000410087		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000264377	ENST00000409440		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000264377	ENST00000374969		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000264377	ENST00000339098		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000264377	ENST00000374970		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
5CDS-5UTR	ENST00000264377	ENST00000479558		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374416	ENST00000410087		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374416	ENST00000409440		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374416	ENST00000374969		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374416	ENST00000339098		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374416	ENST00000374970		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
5CDS-5UTR	ENST00000374416	ENST00000479558		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374415	ENST00000410087		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374415	ENST00000409440		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374415	ENST00000374969		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374415	ENST00000339098		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000374415	ENST00000374970		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
5CDS-5UTR	ENST00000374415	ENST00000479558		TCGA	RV	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182468806	-
Frame-shit	ENST00000286371	ENST00000273480		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
Frame-shit	ENST00000286371	ENST00000480908		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
Frame-shit	ENST00000286371	ENST00000393000		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5CDS-intron	ENST00000286371	ENST00000486377		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-3CDS	ENST00000539728	ENST00000273480		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-3CDS	ENST00000539728	ENST00000480908		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-3CDS	ENST00000539728	ENST00000393000		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-intron	ENST00000539728	ENST00000486377		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-3CDS	ENST00000462082	ENST00000273480		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-3CDS	ENST00000462082	ENST00000480908		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-3CDS	ENST00000462082	ENST00000393000		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5UTR-intron	ENST00000462082	ENST00000486377		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
intron-3CDS	ENST00000484727	ENST00000273480		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
intron-3CDS	ENST00000484727	ENST00000480908		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
intron-3CDS	ENST00000484727	ENST00000393000		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
intron-intron	ENST00000484727	ENST00000486377		TCGA	RV	LUSC	TCGA-21-1082-01A	ATP1B3	chr3	141595752	+	RNF7	chr3	141464001	+
5CDS-5UTR	ENST00000284224	ENST00000373347		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-5UTR	ENST00000284224	ENST00000495979		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-intron	ENST00000284224	ENST00000235180		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-5UTR	ENST00000581714	ENST00000373347		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-5UTR	ENST00000581714	ENST00000495979		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-intron	ENST00000581714	ENST00000235180		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-5UTR	ENST00000580774	ENST00000373347		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-5UTR	ENST00000580774	ENST00000495979		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
5CDS-intron	ENST00000580774	ENST00000235180		TCGA	RV	LUSC	TCGA-85-8071-01A	CHST9	chr18	24604080	-	DLGAP3	chr1	35373038	-
In-frame	ENST00000346329	ENST00000257192		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
5CDS-intron	ENST00000346329	ENST00000462981		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
In-frame	ENST00000301843	ENST00000257192		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
5CDS-intron	ENST00000301843	ENST00000462981		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
intron-3CDS	ENST00000527622	ENST00000257192		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
intron-intron	ENST00000527622	ENST00000462981		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
In-frame	ENST00000376561	ENST00000257192		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
5CDS-intron	ENST00000376561	ENST00000462981		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
In-frame	ENST00000538675	ENST00000257192		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
5CDS-intron	ENST00000538675	ENST00000462981		TCGA	RV	LUSC	TCGA-94-7033-01A	CTTN	chr11	70269101	+	DSG1	chr18	28906544	+
In-frame	ENST00000397166	ENST00000529359		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
In-frame	ENST00000397166	ENST00000424479		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
In-frame	ENST00000397166	ENST00000531823		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
5CDS-intron	ENST00000397166	ENST00000530588		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
5CDS-intron	ENST00000397166	ENST00000422581		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
5CDS-intron	ENST00000397166	ENST00000419686		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
In-frame	ENST00000520272	ENST00000529359		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
In-frame	ENST00000520272	ENST00000424479		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
In-frame	ENST00000520272	ENST00000531823		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
5CDS-intron	ENST00000520272	ENST00000530588		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
5CDS-intron	ENST00000520272	ENST00000422581		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
5CDS-intron	ENST00000520272	ENST00000419686		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
3UTR-3CDS	ENST00000528888	ENST00000529359		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
3UTR-3CDS	ENST00000528888	ENST00000424479		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
3UTR-3CDS	ENST00000528888	ENST00000531823		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
3UTR-intron	ENST00000528888	ENST00000530588		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
3UTR-intron	ENST00000528888	ENST00000422581		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
3UTR-intron	ENST00000528888	ENST00000419686		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-3CDS	ENST00000517385	ENST00000529359		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-3CDS	ENST00000517385	ENST00000424479		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-3CDS	ENST00000517385	ENST00000531823		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-intron	ENST00000517385	ENST00000530588		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-intron	ENST00000517385	ENST00000422581		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-intron	ENST00000517385	ENST00000419686		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-3CDS	ENST00000529845	ENST00000529359		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-3CDS	ENST00000529845	ENST00000424479		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-3CDS	ENST00000529845	ENST00000531823		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-intron	ENST00000529845	ENST00000530588		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-intron	ENST00000529845	ENST00000422581		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
intron-intron	ENST00000529845	ENST00000419686		TCGA	RV	LUSC	TCGA-85-7698-01A	DDHD2	chr8	38103468	+	PPAPDC1B	chr8	38123829	-
In-frame	ENST00000375592	ENST00000590083		TCGA	RV	LUSC	TCGA-33-4587-01A	FBXO42	chr1	16582206	-	C19orf26	chr19	1231274	-
Frame-shit	ENST00000375592	ENST00000382477		TCGA	RV	LUSC	TCGA-33-4587-01A	FBXO42	chr1	16582206	-	C19orf26	chr19	1231274	-
In-frame	ENST00000375592	ENST00000215376		TCGA	RV	LUSC	TCGA-33-4587-01A	FBXO42	chr1	16582206	-	C19orf26	chr19	1231274	-
intron-3CDS	ENST00000478089	ENST00000590083		TCGA	RV	LUSC	TCGA-33-4587-01A	FBXO42	chr1	16582206	-	C19orf26	chr19	1231274	-
intron-3CDS	ENST00000478089	ENST00000382477		TCGA	RV	LUSC	TCGA-33-4587-01A	FBXO42	chr1	16582206	-	C19orf26	chr19	1231274	-
intron-3CDS	ENST00000478089	ENST00000215376		TCGA	RV	LUSC	TCGA-33-4587-01A	FBXO42	chr1	16582206	-	C19orf26	chr19	1231274	-
5CDS-5UTR	ENST00000283249	ENST00000474820		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000283249	ENST00000348849		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000283249	ENST00000409075		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000283249	ENST00000409289		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000283249	ENST00000392753		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000283249	ENST00000409972		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000485635	ENST00000474820		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000485635	ENST00000348849		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000485635	ENST00000409075		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000485635	ENST00000409289		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000485635	ENST00000392753		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000485635	ENST00000409972		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000428609	ENST00000474820		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000428609	ENST00000348849		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000428609	ENST00000409075		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000428609	ENST00000409289		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000428609	ENST00000392753		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
intron-5UTR	ENST00000428609	ENST00000409972		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409967	ENST00000474820		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409967	ENST00000348849		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409967	ENST00000409075		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409967	ENST00000409289		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409967	ENST00000392753		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409967	ENST00000409972		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409872	ENST00000474820		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409872	ENST00000348849		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409872	ENST00000409075		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409872	ENST00000409289		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409872	ENST00000392753		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000409872	ENST00000409972		TCGA	RV	LUSC	TCGA-22-1005-01A	ITGB6	chr2	161055690	-	RBMS1	chr2	161141555	-
5CDS-5UTR	ENST00000378565	ENST00000378720		TCGA	RV	LUSC	TCGA-60-2706-01A	ITM2B	chr13	48807613	+	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000378565	ENST00000378697		TCGA	RV	LUSC	TCGA-60-2706-01A	ITM2B	chr13	48807613	+	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000378565	ENST00000495654		TCGA	RV	LUSC	TCGA-60-2706-01A	ITM2B	chr13	48807613	+	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000378549	ENST00000378720		TCGA	RV	LUSC	TCGA-60-2706-01A	ITM2B	chr13	48807613	+	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000378549	ENST00000378697		TCGA	RV	LUSC	TCGA-60-2706-01A	ITM2B	chr13	48807613	+	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000378549	ENST00000495654		TCGA	RV	LUSC	TCGA-60-2706-01A	ITM2B	chr13	48807613	+	ESD	chr13	47367579	-
In-frame	ENST00000377809	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000377809	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000377809	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000402010	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000402010	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000402010	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000413835	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000413835	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000413835	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5UTR-3CDS	ENST00000377810	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5UTR-3CDS	ENST00000377810	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5UTR-3UTR	ENST00000377810	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000315032	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000315032	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000315032	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000508192	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000508192	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000508192	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000361128	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000361128	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000361128	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000350490	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000350490	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000350490	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000502399	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
In-frame	ENST00000502399	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5CDS-3UTR	ENST00000502399	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000509502	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000509502	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3UTR	ENST00000509502	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000513765	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000513765	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3UTR	ENST00000513765	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000408948	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000408948	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3UTR	ENST00000408948	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000425897	ENST00000287598		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3CDS	ENST00000425897	ENST00000412359		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
intron-3UTR	ENST00000425897	ENST00000560120		TCGA	RV	LUSC	TCGA-94-7557-01A	MARK2	chr11	63607032	+	BUB1B	chr15	40468678	+
5UTR-3CDS	ENST00000442092	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000442092	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000442092	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-5UTR	ENST00000442092	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-3CDS	ENST00000266022	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000266022	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000266022	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-5UTR	ENST00000266022	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-3CDS	ENST00000443081	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000443081	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000443081	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-5UTR	ENST00000443081	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-3CDS	ENST00000539992	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000539992	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000539992	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-5UTR	ENST00000539992	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
3UTR-3CDS	ENST00000441115	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
3UTR-intron	ENST00000441115	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
3UTR-intron	ENST00000441115	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
3UTR-5UTR	ENST00000441115	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-3CDS	ENST00000422955	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000422955	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-intron	ENST00000422955	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-5UTR	ENST00000422955	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
intron-3CDS	ENST00000421682	ENST00000330062		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
intron-intron	ENST00000421682	ENST00000539790		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
intron-intron	ENST00000421682	ENST00000559482		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
intron-5UTR	ENST00000421682	ENST00000540499		TCGA	RV	LUSC	TCGA-85-A53L-01A	RBM6	chr3	49977658	+	IDH2	chr15	90634876	-
5UTR-5UTR	ENST00000262160	ENST00000581982		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
5UTR-5UTR	ENST00000262160	ENST00000280200		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
5UTR-5UTR	ENST00000262160	ENST00000577287		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
5UTR-5UTR	ENST00000262160	ENST00000582621		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000402690	ENST00000581982		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000402690	ENST00000280200		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000402690	ENST00000577287		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000402690	ENST00000582621		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000356825	ENST00000581982		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000356825	ENST00000280200		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000356825	ENST00000577287		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000356825	ENST00000582621		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000586040	ENST00000581982		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000586040	ENST00000280200		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000586040	ENST00000577287		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000586040	ENST00000582621		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000591214	ENST00000581982		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000591214	ENST00000280200		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000591214	ENST00000577287		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000591214	ENST00000582621		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000587353	ENST00000581982		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000587353	ENST00000280200		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000587353	ENST00000577287		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
intron-5UTR	ENST00000587353	ENST00000582621		TCGA	RV	LUSC	TCGA-21-1083-01A	SMAD2	chr18	45456732	-	CD226	chr18	67563281	-
5CDS-5UTR	ENST00000377351	ENST00000228741		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000377351	ENST00000552142		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000377351	ENST00000549529		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000335972	ENST00000228741		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000335972	ENST00000552142		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000335972	ENST00000549529		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000490869	ENST00000228741		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000490869	ENST00000552142		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
intron-intron	ENST00000490869	ENST00000549529		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000377269	ENST00000228741		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000377269	ENST00000552142		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000377269	ENST00000549529		TCGA	RV	LUSC	TCGA-94-8491-01A	UBA1	chrX	47074525	+	ELK3	chr12	96588323	+
Frame-shit	ENST00000263228	ENST00000361005		TCGA	RV	LUSC	TCGA-60-2719-01A	UBE2R2	chr9	33817932	+	PRSS3	chr9	33796641	+
Frame-shit	ENST00000263228	ENST00000342836		TCGA	RV	LUSC	TCGA-60-2719-01A	UBE2R2	chr9	33817932	+	PRSS3	chr9	33796641	+
Frame-shit	ENST00000263228	ENST00000429677		TCGA	RV	LUSC	TCGA-60-2719-01A	UBE2R2	chr9	33817932	+	PRSS3	chr9	33796641	+
Frame-shit	ENST00000263228	ENST00000379405		TCGA	RV	LUSC	TCGA-60-2719-01A	UBE2R2	chr9	33817932	+	PRSS3	chr9	33796641	+
5CDS-intron	ENST00000263228	ENST00000495682		TCGA	RV	LUSC	TCGA-60-2719-01A	UBE2R2	chr9	33817932	+	PRSS3	chr9	33796641	+
In-frame	ENST00000311437	ENST00000588025		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF490	chr19	12719972	-	FARSA	chr19	13041563	-
In-frame	ENST00000311437	ENST00000423140		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF490	chr19	12719972	-	FARSA	chr19	13041563	-
In-frame	ENST00000311437	ENST00000314606		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF490	chr19	12719972	-	FARSA	chr19	13041563	-
5UTR-3CDS	ENST00000465656	ENST00000588025		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF490	chr19	12719972	-	FARSA	chr19	13041563	-
5UTR-3CDS	ENST00000465656	ENST00000423140		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF490	chr19	12719972	-	FARSA	chr19	13041563	-
5UTR-3CDS	ENST00000465656	ENST00000314606		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF490	chr19	12719972	-	FARSA	chr19	13041563	-
Frame-shit	ENST00000487273	ENST00000302495		TCGA	RV	LUSC	TCGA-77-7139-01A	ADAM9	chr8	38884329	+	HTRA4	chr8	38839172	+
intron-3CDS	ENST00000466936	ENST00000302495		TCGA	RV	LUSC	TCGA-77-7139-01A	ADAM9	chr8	38884329	+	HTRA4	chr8	38839172	+
intron-3CDS	ENST00000481513	ENST00000302495		TCGA	RV	LUSC	TCGA-77-7139-01A	ADAM9	chr8	38884329	+	HTRA4	chr8	38839172	+
intron-3CDS	ENST00000484143	ENST00000302495		TCGA	RV	LUSC	TCGA-77-7139-01A	ADAM9	chr8	38884329	+	HTRA4	chr8	38839172	+
3UTR-3CDS	ENST00000319670	ENST00000215567		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-5UTR	ENST00000319670	ENST00000596073		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-5UTR	ENST00000319670	ENST00000600083		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-5UTR	ENST00000319670	ENST00000436007		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-3UTR	ENST00000319670	ENST00000596164		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-3CDS	ENST00000359920	ENST00000215567		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-5UTR	ENST00000359920	ENST00000596073		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-5UTR	ENST00000359920	ENST00000600083		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-5UTR	ENST00000359920	ENST00000436007		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
3UTR-3UTR	ENST00000359920	ENST00000596164		TCGA	RV	LUSC	TCGA-56-7221-01A	ARHGEF18	chr19	7535201	+	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000350026	ENST00000461783		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000449545		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000367174		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000456144		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000318981		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000360366		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000529824		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000456877		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000528391		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000350026	ENST00000275246		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-5UTR	ENST00000346085	ENST00000461783		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000449545		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000367174		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000456144		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000318981		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000360366		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000529824		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000456877		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000528391		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000346085	ENST00000275246		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-5UTR	ENST00000367148	ENST00000461783		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000449545		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000367174		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000456144		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000318981		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000360366		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000529824		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000456877		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000528391		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000367148	ENST00000275246		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-5UTR	ENST00000275248	ENST00000461783		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000449545		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000367174		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000456144		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000318981		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000360366		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000529824		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000456877		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000528391		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
5CDS-intron	ENST00000275248	ENST00000275246		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-5UTR	ENST00000478761	ENST00000461783		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000449545		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000367174		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000456144		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000318981		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000360366		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000529824		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000456877		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000528391		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
3UTR-intron	ENST00000478761	ENST00000275246		TCGA	RV	LUSC	TCGA-85-7950-01A	ARID1B	chr6	157470085	+	TIAM2	chr6	155265250	+
intron-intron	ENST00000556931	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000556931	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000505139	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368408	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000418360	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000368433		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000315144		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000368432		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000368431		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000292180		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000487371		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000405236		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000295530		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000498667	ENST00000368428		TCGA	RV	LUSC	TCGA-66-2771-01A	EFNA3	chr1	155051545	+	FLAD1	chr1	154965189	+
intron-3CDS	ENST00000327921	ENST00000557636		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000327921	ENST00000286650		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000327921	ENST00000298832		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000327921	ENST00000556893		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000327921	ENST00000554510		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000327921	ENST00000556977		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000327921	ENST00000555422		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
Frame-shit	ENST00000262233	ENST00000557636		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000262233	ENST00000286650		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000262233	ENST00000298832		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000262233	ENST00000556893		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000262233	ENST00000554510		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000262233	ENST00000556977		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000262233	ENST00000555422		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
Frame-shit	ENST00000334192	ENST00000557636		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000334192	ENST00000286650		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000334192	ENST00000298832		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000334192	ENST00000556893		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000334192	ENST00000554510		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000334192	ENST00000556977		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
5CDS-intron	ENST00000334192	ENST00000555422		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-3CDS	ENST00000556758	ENST00000557636		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000556758	ENST00000286650		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000556758	ENST00000298832		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000556758	ENST00000556893		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000556758	ENST00000554510		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000556758	ENST00000556977		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
intron-intron	ENST00000556758	ENST00000555422		TCGA	RV	LUSC	TCGA-77-A5G6-01A	EML1	chr14	100259880	+	TTLL5	chr14	76349028	+
In-frame	ENST00000240423	ENST00000295225		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000240423	ENST00000377181		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000240423	ENST00000360990		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5CDS-3UTR	ENST00000240423	ENST00000468529		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3CDS	ENST00000427946	ENST00000295225		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3UTR	ENST00000427946	ENST00000377181		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3UTR	ENST00000427946	ENST00000360990		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3UTR	ENST00000427946	ENST00000468529		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3CDS	ENST00000455200	ENST00000295225		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3UTR	ENST00000455200	ENST00000377181		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3UTR	ENST00000455200	ENST00000360990		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3UTR	ENST00000455200	ENST00000468529		TCGA	RV	LUSC	TCGA-90-7767-01A	NCAPH	chr2	97001586	+	KCNIP3	chr2	96040044	+
5UTR-3CDS	ENST00000393232	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000393232	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000393232	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000393232	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000393232	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000393232	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000393232	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-3CDS	ENST00000353868	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000353868	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000353868	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000353868	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000353868	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000353868	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000353868	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-3CDS	ENST00000539636	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000539636	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000539636	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000539636	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000539636	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000539636	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000539636	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-3CDS	ENST00000311967	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000311967	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000311967	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000311967	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000311967	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000311967	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000311967	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-3CDS	ENST00000223190	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000223190	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000223190	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000223190	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000223190	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000223190	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
5UTR-intron	ENST00000223190	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-3CDS	ENST00000393230	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393230	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393230	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393230	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393230	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393230	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393230	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-3CDS	ENST00000393231	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393231	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393231	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393231	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393231	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393231	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-intron	ENST00000393231	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-3CDS	ENST00000477428	ENST00000541925		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-intron	ENST00000477428	ENST00000542156		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-intron	ENST00000477428	ENST00000370390		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-intron	ENST00000477428	ENST00000451863		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-intron	ENST00000477428	ENST00000544228		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-intron	ENST00000477428	ENST00000445323		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
3UTR-intron	ENST00000477428	ENST00000538506		TCGA	RV	LUSC	TCGA-33-4547-01A	NRF1	chr7	129251665	+	MTMR1	chrX	149919202	+
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-3CDS	ENST00000502484	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-3CDS	ENST00000502484	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-3CDS	ENST00000502484	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-intron	ENST00000502484	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000546160	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000546160	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000546160	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000546160	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000453022		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000545085		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	LUSC	TCGA-39-5029-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000340635	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000360047	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000360047	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
Frame-shit	ENST00000507116	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
5CDS-intron	ENST00000507116	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000502484	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000502484	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000546160	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000546160	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
Frame-shit	ENST00000502575	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
5CDS-intron	ENST00000502575	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000358923	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000358923	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000503258	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000503258	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000405755	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000405755	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000317118	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000317118	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-3CDS	ENST00000503947	ENST00000282878		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
intron-intron	ENST00000503947	ENST00000507977		TCGA	RV	LUSC	TCGA-77-7142-01A	PDE4D	chr5	59064073	-	RAB3C	chr5	58120865	+
In-frame	ENST00000541529	ENST00000370501		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000541529	ENST00000482259		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
In-frame	ENST00000270776	ENST00000370501		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000270776	ENST00000482259		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
In-frame	ENST00000538557	ENST00000370501		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
5CDS-intron	ENST00000538557	ENST00000482259		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
intron-3CDS	ENST00000498356	ENST00000370501		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
intron-intron	ENST00000498356	ENST00000482259		TCGA	RV	LUSC	TCGA-58-A46K-01A	PGD	chr1	10459761	+	NTSR1	chr20	61386037	+
In-frame	ENST00000452898	ENST00000286353		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000452898	ENST00000502783		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000452898	ENST00000393010		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000505502		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000504264		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000508812		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000452898	ENST00000393007		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
In-frame	ENST00000286364	ENST00000286353		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000286364	ENST00000502783		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-5UTR	ENST00000286364	ENST00000393010		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000505502		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000504264		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000508812		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
5CDS-intron	ENST00000286364	ENST00000393007		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-3CDS	ENST00000509118	ENST00000286353		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000509118	ENST00000502783		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-5UTR	ENST00000509118	ENST00000393010		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000505502		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000504264		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000508812		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
intron-intron	ENST00000509118	ENST00000393007		TCGA	RV	LUSC	TCGA-66-2758-01A	RASA2	chr3	141206058	+	ACPL2	chr3	140997184	+
Frame-shit	ENST00000361756	ENST00000544246		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000361756	ENST00000377865		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
In-frame	ENST00000361756	ENST00000456367		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000361756	ENST00000328454		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000361756	ENST00000377861		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000533380	ENST00000544246		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000533380	ENST00000377865		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
In-frame	ENST00000533380	ENST00000456367		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000533380	ENST00000328454		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000533380	ENST00000377861		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000393713	ENST00000544246		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000393713	ENST00000377865		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
In-frame	ENST00000393713	ENST00000456367		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000393713	ENST00000328454		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000393713	ENST00000377861		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
3UTR-3CDS	ENST00000490867	ENST00000544246		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
3UTR-3CDS	ENST00000490867	ENST00000377865		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
3UTR-3CDS	ENST00000490867	ENST00000456367		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
3UTR-3CDS	ENST00000490867	ENST00000328454		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
3UTR-intron	ENST00000490867	ENST00000377861		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000545854	ENST00000544246		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000545854	ENST00000377865		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000545854	ENST00000456367		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000545854	ENST00000328454		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5UTR-intron	ENST00000545854	ENST00000377861		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000530137	ENST00000544246		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000530137	ENST00000377865		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
In-frame	ENST00000530137	ENST00000456367		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000530137	ENST00000328454		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000530137	ENST00000377861		TCGA	RV	LUSC	TCGA-70-6723-01A	RNF121	chr11	71671937	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000487694	ENST00000397228		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000487694	ENST00000523887		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000487694	ENST00000276461		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000487694	ENST00000518586		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000487694	ENST00000335171		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000487694	ENST00000523107		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000487694	ENST00000519638		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000397228		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000523887		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000276461		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000518586		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000335171		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000523107		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000461745	ENST00000519638		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000397228		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000523887		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000276461		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000518586		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000335171		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000523107		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000332191	ENST00000519638		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000397228		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000523887		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000276461		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000518586		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000335171		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000523107		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
intron-intron	ENST00000469233	ENST00000519638		TCGA	RV	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37607077	+
5CDS-intron	ENST00000372853	ENST00000277198		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372853	ENST00000297979		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372853	ENST00000375315		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372853	ENST00000395357		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372853	ENST00000425634		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372853	ENST00000433691		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372853	ENST00000473778		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000277198		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000297979		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000375315		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000395357		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000425634		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000433691		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000452446	ENST00000473778		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000277198		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000297979		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000375315		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000395357		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000425634		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000433691		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372850	ENST00000473778		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000277198		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000297979		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000375315		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000395357		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000425634		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000433691		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000372847	ENST00000473778		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000277198		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000297979		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000375315		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000395357		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000425634		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000433691		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
intron-intron	ENST00000483206	ENST00000473778		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	URM1	chr9	131133694	+	C9orf3	chr9	97822976	+
Frame-shit	ENST00000336078	ENST00000348428		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000336078	ENST00000345724		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000591083	ENST00000348428		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000591083	ENST00000345724		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000589288	ENST00000348428		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000589288	ENST00000345724		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000591230	ENST00000348428		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000591230	ENST00000345724		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000591808	ENST00000348428		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
Frame-shit	ENST00000591808	ENST00000345724		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
intron-3CDS	ENST00000588956	ENST00000348428		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
intron-3CDS	ENST00000588956	ENST00000345724		TCGA	RV	LUSC	TCGA-43-5670-01A	ZNF532	chr18	56621031	+	MALT1	chr18	56400629	+
5UTR-3CDS	ENST00000264010	ENST00000379378		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	CTCF	chr16	67605167	+	E2F4	chr16	67228589	+
5UTR-3UTR	ENST00000264010	ENST00000564718		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	CTCF	chr16	67605167	+	E2F4	chr16	67228589	+
5UTR-3CDS	ENST00000401394	ENST00000379378		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	CTCF	chr16	67605167	+	E2F4	chr16	67228589	+
5UTR-3UTR	ENST00000401394	ENST00000564718		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	CTCF	chr16	67605167	+	E2F4	chr16	67228589	+
intron-3CDS	ENST00000543086	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000543086	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000543086	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
5UTR-3CDS	ENST00000546231	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
5UTR-5UTR	ENST00000546231	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
5UTR-intron	ENST00000546231	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
5UTR-3CDS	ENST00000397203	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
5UTR-5UTR	ENST00000397203	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
5UTR-intron	ENST00000397203	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000360905	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000360905	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000360905	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000589028	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000589028	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000589028	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000355446	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000355446	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000355446	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000536573	ENST00000229238		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000536573	ENST00000543164		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000536573	ENST00000543703		TCGA	RV	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100653	+	MRPL51	chr12	6602138	-
In-frame	ENST00000522706	ENST00000229447		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000522706	ENST00000344419		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000522706	ENST00000392256		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000522706	ENST00000392255		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000522706	ENST00000500320		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000522706	ENST00000425615		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000262109	ENST00000229447		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000262109	ENST00000344419		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000262109	ENST00000392256		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000262109	ENST00000392255		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000262109	ENST00000500320		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
In-frame	ENST00000262109	ENST00000425615		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
intron-3CDS	ENST00000518277	ENST00000229447		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
intron-3CDS	ENST00000518277	ENST00000344419		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
intron-3CDS	ENST00000518277	ENST00000392256		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
intron-3CDS	ENST00000518277	ENST00000392255		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
intron-3CDS	ENST00000518277	ENST00000500320		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
intron-3CDS	ENST00000518277	ENST00000425615		TCGA	RV	LUSC	TCGA-94-7943-01A	ERICH1	chr8	618598	-	IYD	chr6	150710488	+
5CDS-5UTR	ENST00000434748	ENST00000552828		TCGA	RV	LUSC	TCGA-34-5232-01A	FBRSL1	chr12	133067447	+	CKAP4	chr12	106670327	-
5CDS-intron	ENST00000434748	ENST00000378026		TCGA	RV	LUSC	TCGA-34-5232-01A	FBRSL1	chr12	133067447	+	CKAP4	chr12	106670327	-
5CDS-5UTR	ENST00000261673	ENST00000552828		TCGA	RV	LUSC	TCGA-34-5232-01A	FBRSL1	chr12	133067447	+	CKAP4	chr12	106670327	-
5CDS-intron	ENST00000261673	ENST00000378026		TCGA	RV	LUSC	TCGA-34-5232-01A	FBRSL1	chr12	133067447	+	CKAP4	chr12	106670327	-
intron-5UTR	ENST00000542061	ENST00000552828		TCGA	RV	LUSC	TCGA-34-5232-01A	FBRSL1	chr12	133067447	+	CKAP4	chr12	106670327	-
intron-intron	ENST00000542061	ENST00000378026		TCGA	RV	LUSC	TCGA-34-5232-01A	FBRSL1	chr12	133067447	+	CKAP4	chr12	106670327	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUSC	TCGA-34-2608-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5UTR-3CDS	ENST00000162391	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	FOXJ2	chr12	8186429	+	LPCAT3	chr12	7092700	-
5UTR-intron	ENST00000162391	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	FOXJ2	chr12	8186429	+	LPCAT3	chr12	7092700	-
5UTR-3CDS	ENST00000428177	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	FOXJ2	chr12	8186429	+	LPCAT3	chr12	7092700	-
5UTR-intron	ENST00000428177	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	FOXJ2	chr12	8186429	+	LPCAT3	chr12	7092700	-
intron-3CDS	ENST00000539192	ENST00000261407		TCGA	RV	LUSC	TCGA-85-8584-01A	FOXJ2	chr12	8186429	+	LPCAT3	chr12	7092700	-
intron-intron	ENST00000539192	ENST00000535021		TCGA	RV	LUSC	TCGA-85-8584-01A	FOXJ2	chr12	8186429	+	LPCAT3	chr12	7092700	-
Frame-shit	ENST00000264039	ENST00000318698		TCGA	RV	LUSC	TCGA-66-2789-01A	GPC1	chr2	241375501	+	ANKFN1	chr17	54428127	+
Frame-shit	ENST00000264039	ENST00000566473		TCGA	RV	LUSC	TCGA-66-2789-01A	GPC1	chr2	241375501	+	ANKFN1	chr17	54428127	+
5CDS-intron	ENST00000264039	ENST00000574292		TCGA	RV	LUSC	TCGA-66-2789-01A	GPC1	chr2	241375501	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000466624	ENST00000318698		TCGA	RV	LUSC	TCGA-66-2789-01A	GPC1	chr2	241375501	+	ANKFN1	chr17	54428127	+
intron-3CDS	ENST00000466624	ENST00000566473		TCGA	RV	LUSC	TCGA-66-2789-01A	GPC1	chr2	241375501	+	ANKFN1	chr17	54428127	+
intron-intron	ENST00000466624	ENST00000574292		TCGA	RV	LUSC	TCGA-66-2789-01A	GPC1	chr2	241375501	+	ANKFN1	chr17	54428127	+
In-frame	ENST00000355072	ENST00000398051		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
In-frame	ENST00000355072	ENST00000398052		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
In-frame	ENST00000355072	ENST00000504933		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
In-frame	ENST00000355072	ENST00000345167		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
5CDS-intron	ENST00000355072	ENST00000503518		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
5CDS-intron	ENST00000355072	ENST00000442472		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
5CDS-intron	ENST00000355072	ENST00000509545		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-3CDS	ENST00000513806	ENST00000398051		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-3CDS	ENST00000513806	ENST00000398052		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-3CDS	ENST00000513806	ENST00000504933		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-3CDS	ENST00000513806	ENST00000345167		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-intron	ENST00000513806	ENST00000503518		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-intron	ENST00000513806	ENST00000442472		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
intron-intron	ENST00000513806	ENST00000509545		TCGA	RV	LUSC	TCGA-98-7454-01A	HTT	chr4	3101121	+	GRK4	chr4	3021368	+
Frame-shit	ENST00000359534	ENST00000287152		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000394362		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000373213		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000373216		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000229913		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000373215		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000538893		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000359534	ENST00000541946		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
5CDS-intron	ENST00000359534	ENST00000465719		TCGA	RV	LUSC	TCGA-60-2720-01A	KCNK5	chr6	39196702	-	KIF6	chr6	39398937	-
In-frame	ENST00000297293	ENST00000405709		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000297293	ENST00000331762		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000297293	ENST00000452895		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000297293	ENST00000415362		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000297293	ENST00000447215		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
In-frame	ENST00000297293	ENST00000437687		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000297293	ENST00000489381		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000297293	ENST00000450877		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000493372	ENST00000405709		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000493372	ENST00000331762		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000493372	ENST00000452895		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000493372	ENST00000415362		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000493372	ENST00000447215		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-3CDS	ENST00000493372	ENST00000437687		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000493372	ENST00000489381		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
intron-5UTR	ENST00000493372	ENST00000450877		TCGA	RV	LUSC	TCGA-63-A5MG-01A	LMTK2	chr7	97800986	+	IMMP2L	chr7	110603621	-
5CDS-intron	ENST00000358506	ENST00000258534		TCGA	RV	LUSC	TCGA-51-6867-01A	PPP1CB	chr2	29016863	+	DRAM1	chr12	102405591	+
5CDS-intron	ENST00000358506	ENST00000544152		TCGA	RV	LUSC	TCGA-51-6867-01A	PPP1CB	chr2	29016863	+	DRAM1	chr12	102405591	+
5CDS-intron	ENST00000296122	ENST00000258534		TCGA	RV	LUSC	TCGA-51-6867-01A	PPP1CB	chr2	29016863	+	DRAM1	chr12	102405591	+
5CDS-intron	ENST00000296122	ENST00000544152		TCGA	RV	LUSC	TCGA-51-6867-01A	PPP1CB	chr2	29016863	+	DRAM1	chr12	102405591	+
5CDS-intron	ENST00000395366	ENST00000258534		TCGA	RV	LUSC	TCGA-51-6867-01A	PPP1CB	chr2	29016863	+	DRAM1	chr12	102405591	+
5CDS-intron	ENST00000395366	ENST00000544152		TCGA	RV	LUSC	TCGA-51-6867-01A	PPP1CB	chr2	29016863	+	DRAM1	chr12	102405591	+
5UTR-3CDS	ENST00000464506	ENST00000361306		TCGA	RV	LUSC	TCGA-33-6738-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13635849	+
5UTR-3CDS	ENST00000464506	ENST00000380602		TCGA	RV	LUSC	TCGA-33-6738-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13635849	+
5UTR-intron	ENST00000464506	ENST00000473826		TCGA	RV	LUSC	TCGA-33-6738-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13635849	+
3UTR-3CDS	ENST00000243325	ENST00000361306		TCGA	RV	LUSC	TCGA-33-6738-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13635849	+
3UTR-3CDS	ENST00000243325	ENST00000380602		TCGA	RV	LUSC	TCGA-33-6738-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13635849	+
3UTR-intron	ENST00000243325	ENST00000473826		TCGA	RV	LUSC	TCGA-33-6738-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13635849	+
Frame-shit	ENST00000225525	ENST00000158149		TCGA	RV	LUSC	TCGA-66-2795-01A	TAX1BP3	chr17	3571782	-	C17orf85	chr17	3719564	-
Frame-shit	ENST00000225525	ENST00000389005		TCGA	RV	LUSC	TCGA-66-2795-01A	TAX1BP3	chr17	3571782	-	C17orf85	chr17	3719564	-
5CDS-intron	ENST00000225525	ENST00000577169		TCGA	RV	LUSC	TCGA-66-2795-01A	TAX1BP3	chr17	3571782	-	C17orf85	chr17	3719564	-
In-frame	ENST00000335464	ENST00000538936		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000335464	ENST00000331285		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000335464	ENST00000538721		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000335464	ENST00000571105		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000335464	ENST00000570391		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000335464	ENST00000570388		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-3CDS	ENST00000417024	ENST00000538936		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000417024	ENST00000331285		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000417024	ENST00000538721		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000417024	ENST00000571105		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000417024	ENST00000570391		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000417024	ENST00000570388		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
In-frame	ENST00000582773	ENST00000538936		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582773	ENST00000331285		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582773	ENST00000538721		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582773	ENST00000571105		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582773	ENST00000570391		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582773	ENST00000570388		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
In-frame	ENST00000582330	ENST00000538936		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582330	ENST00000331285		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582330	ENST00000538721		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582330	ENST00000571105		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582330	ENST00000570391		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
5CDS-5UTR	ENST00000582330	ENST00000570388		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-3CDS	ENST00000584171	ENST00000538936		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000584171	ENST00000331285		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000584171	ENST00000538721		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000584171	ENST00000571105		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000584171	ENST00000570391		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-5UTR	ENST00000584171	ENST00000570388		TCGA	RV	LUSC	TCGA-98-A53A-01A	TMEM104	chr17	72781742	+	PCYT2	chr17	79867478	-
intron-3CDS	ENST00000593699	ENST00000539909		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000593699	ENST00000286621		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000593699	ENST00000372734		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000593699	ENST00000541550		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-intron	ENST00000593699	ENST00000467840		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000372499	ENST00000539909		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000372499	ENST00000286621		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000372499	ENST00000372734		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000372499	ENST00000541550		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-intron	ENST00000372499	ENST00000467840		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000496424	ENST00000539909		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000496424	ENST00000286621		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000496424	ENST00000372734		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000496424	ENST00000541550		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
intron-intron	ENST00000496424	ENST00000467840		TCGA	RV	LUSC	TCGA-22-5472-01A	C10orf11	chr10	77198252	+	ADK	chr10	76468079	+
In-frame	ENST00000378119	ENST00000259698		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
In-frame	ENST00000378119	ENST00000538035		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378119	ENST00000510784		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378119	ENST00000378023		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378119	ENST00000540914		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378119	ENST00000473070		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
Frame-shit	ENST00000540769	ENST00000259698		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
Frame-shit	ENST00000540769	ENST00000538035		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000540769	ENST00000510784		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000540769	ENST00000378023		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000540769	ENST00000540914		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000540769	ENST00000473070		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
In-frame	ENST00000378102	ENST00000259698		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
In-frame	ENST00000378102	ENST00000538035		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378102	ENST00000510784		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378102	ENST00000378023		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378102	ENST00000540914		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000378102	ENST00000473070		TCGA	RV	LUSC	TCGA-18-3415-01A	C6orf62	chr6	24716376	-	FAM65B	chr6	24818853	-
5CDS-intron	ENST00000286758	ENST00000367545		TCGA	RV	LUSC	TCGA-85-7950-01A	CXCL13	chr4	78532988	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000286758	ENST00000367526		TCGA	RV	LUSC	TCGA-85-7950-01A	CXCL13	chr4	78532988	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000286758	ENST00000480333		TCGA	RV	LUSC	TCGA-85-7950-01A	CXCL13	chr4	78532988	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000254337	ENST00000586783		TCGA	RV	LUSC	TCGA-52-7810-01A	DCAF15	chr19	14063456	+	C19orf57	chr19	14006359	-
Frame-shit	ENST00000254337	ENST00000454313		TCGA	RV	LUSC	TCGA-52-7810-01A	DCAF15	chr19	14063456	+	C19orf57	chr19	14006359	-
Frame-shit	ENST00000254337	ENST00000346736		TCGA	RV	LUSC	TCGA-52-7810-01A	DCAF15	chr19	14063456	+	C19orf57	chr19	14006359	-
Frame-shit	ENST00000254337	ENST00000591586		TCGA	RV	LUSC	TCGA-52-7810-01A	DCAF15	chr19	14063456	+	C19orf57	chr19	14006359	-
5CDS-5UTR	ENST00000528416	ENST00000279249		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000528416	ENST00000533419		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000528416	ENST00000544348		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000415073	ENST00000279249		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000415073	ENST00000533419		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000415073	ENST00000544348		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000252268	ENST00000279249		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000252268	ENST00000533419		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000252268	ENST00000544348		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
3UTR-5UTR	ENST00000532264	ENST00000279249		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
3UTR-5UTR	ENST00000532264	ENST00000533419		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
3UTR-5UTR	ENST00000532264	ENST00000544348		TCGA	RV	LUSC	TCGA-52-7810-01A	DPF2	chr11	65101389	+	CDC42EP2	chr11	65088015	+
In-frame	ENST00000360184	ENST00000216554		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
In-frame	ENST00000360184	ENST00000558506		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
5CDS-intron	ENST00000360184	ENST00000560200		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
5CDS-intron	ENST00000360184	ENST00000392715		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
intron-3CDS	ENST00000556791	ENST00000216554		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
intron-3CDS	ENST00000556791	ENST00000558506		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
intron-intron	ENST00000556791	ENST00000560200		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
intron-intron	ENST00000556791	ENST00000392715		TCGA	RV	LUSC	TCGA-56-8629-01A	DYNC1H1	chr14	102517128	+	EIF5	chr14	103805509	+
Frame-shit	ENST00000440973	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
5CDS-intron	ENST00000440973	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
Frame-shit	ENST00000338799	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
5CDS-intron	ENST00000338799	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
intron-3CDS	ENST00000456483	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
intron-intron	ENST00000456483	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
Frame-shit	ENST00000443427	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
5CDS-intron	ENST00000443427	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
Frame-shit	ENST00000206249	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
5CDS-intron	ENST00000206249	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
intron-3CDS	ENST00000406599	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
intron-intron	ENST00000406599	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
Frame-shit	ENST00000427531	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
5CDS-intron	ENST00000427531	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
3UTR-3CDS	ENST00000482101	ENST00000367166		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
3UTR-intron	ENST00000482101	ENST00000480390		TCGA	RV	LUSC	TCGA-66-2788-01A	ESR1	chr6	152265643	+	TFB1M	chr6	155581534	-
5CDS-5UTR	ENST00000403627	ENST00000335793		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000403627	ENST00000439510		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000403627	ENST00000581014		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000403627	ENST00000582303		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000335793		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000439510		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000581014		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000405159	ENST00000582303		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583178	ENST00000335793		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583178	ENST00000439510		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583178	ENST00000581014		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000583178	ENST00000582303		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000580032	ENST00000335793		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000580032	ENST00000439510		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000580032	ENST00000581014		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000580032	ENST00000582303		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000581110	ENST00000335793		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000581110	ENST00000439510		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000581110	ENST00000581014		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000581110	ENST00000582303		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000335793		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000439510		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000581014		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000583024	ENST00000582303		TCGA	RV	LUSC	TCGA-77-8146-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000545951	ENST00000510267		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000545951	ENST00000315423		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000545951	ENST00000503235		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-intron	ENST00000545951	ENST00000505186		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000382839	ENST00000510267		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000382839	ENST00000315423		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000382839	ENST00000503235		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-intron	ENST00000382839	ENST00000505186		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000324666	ENST00000510267		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000324666	ENST00000315423		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000324666	ENST00000503235		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-intron	ENST00000324666	ENST00000505186		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000502458	ENST00000510267		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000502458	ENST00000315423		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000502458	ENST00000503235		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-intron	ENST00000502458	ENST00000505186		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000505311	ENST00000510267		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000505311	ENST00000315423		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-5UTR	ENST00000505311	ENST00000503235		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
5CDS-intron	ENST00000505311	ENST00000505186		TCGA	RV	LUSC	TCGA-21-1082-01A	FAM193A	chr4	2702271	+	TNIP2	chr4	2749672	-
intron-3CDS	ENST00000444761	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000444761	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000444761	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000444761	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000444761	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000444761	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409105	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409105	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409105	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409105	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409105	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409105	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409913	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409913	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409913	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409913	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409913	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409913	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000319466	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000319466	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000319466	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000319466	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000319466	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000319466	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409800	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409800	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409800	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409800	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409800	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409800	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000493804	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000493804	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000493804	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000493804	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000493804	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000493804	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409207	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409207	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409207	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409207	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409207	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409207	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409973	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409973	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409973	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409973	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409973	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409973	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409147	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409147	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409147	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409147	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409147	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409147	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409218	ENST00000409245		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409218	ENST00000319190		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409218	ENST00000461601		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409218	ENST00000394850		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409218	ENST00000263737		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409218	ENST00000536057		TCGA	RV	LUSC	TCGA-96-7545-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000568630	ENST00000320955		TCGA	RV	LUSC	TCGA-85-8479-01A	MGA	chr15	42052727	+	SPTBN5	chr15	42149908	-
In-frame	ENST00000545763	ENST00000320955		TCGA	RV	LUSC	TCGA-85-8479-01A	MGA	chr15	42052727	+	SPTBN5	chr15	42149908	-
In-frame	ENST00000389936	ENST00000320955		TCGA	RV	LUSC	TCGA-85-8479-01A	MGA	chr15	42052727	+	SPTBN5	chr15	42149908	-
In-frame	ENST00000219905	ENST00000320955		TCGA	RV	LUSC	TCGA-85-8479-01A	MGA	chr15	42052727	+	SPTBN5	chr15	42149908	-
In-frame	ENST00000566586	ENST00000320955		TCGA	RV	LUSC	TCGA-85-8479-01A	MGA	chr15	42052727	+	SPTBN5	chr15	42149908	-
In-frame	ENST00000570161	ENST00000320955		TCGA	RV	LUSC	TCGA-85-8479-01A	MGA	chr15	42052727	+	SPTBN5	chr15	42149908	-
5UTR-5UTR	ENST00000341084	ENST00000520552		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000341084	ENST00000335659		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000341084	ENST00000519597		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000341084	ENST00000520311		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000341084	ENST00000519316		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
5UTR-intron	ENST00000341084	ENST00000524319		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000519449	ENST00000520552		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000519449	ENST00000335659		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000519449	ENST00000519597		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000519449	ENST00000520311		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000519449	ENST00000519316		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-intron	ENST00000519449	ENST00000524319		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000523255	ENST00000520552		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000523255	ENST00000335659		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000523255	ENST00000519597		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000523255	ENST00000520311		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000523255	ENST00000519316		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
intron-intron	ENST00000523255	ENST00000524319		TCGA	RV	LUSC	TCGA-66-2771-01A	RNF19A	chr8	101322095	-	ANKRD46	chr8	101545539	-
In-frame	ENST00000321867	ENST00000309909		TCGA	RV	LUSC	TCGA-34-5232-01A	ULK1	chr12	132403929	+	FBXW8	chr12	117461952	+
In-frame	ENST00000321867	ENST00000455858		TCGA	RV	LUSC	TCGA-34-5232-01A	ULK1	chr12	132403929	+	FBXW8	chr12	117461952	+
5CDS-intron	ENST00000321867	ENST00000551773		TCGA	RV	LUSC	TCGA-34-5232-01A	ULK1	chr12	132403929	+	FBXW8	chr12	117461952	+
In-frame	ENST00000540647	ENST00000309909		TCGA	RV	LUSC	TCGA-34-5232-01A	ULK1	chr12	132403929	+	FBXW8	chr12	117461952	+
In-frame	ENST00000540647	ENST00000455858		TCGA	RV	LUSC	TCGA-34-5232-01A	ULK1	chr12	132403929	+	FBXW8	chr12	117461952	+
5CDS-intron	ENST00000540647	ENST00000551773		TCGA	RV	LUSC	TCGA-34-5232-01A	ULK1	chr12	132403929	+	FBXW8	chr12	117461952	+
Frame-shit	ENST00000293218	ENST00000370192		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000293218	ENST00000474241		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000293218	ENST00000423006		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000293218	ENST00000306031		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
Frame-shit	ENST00000589666	ENST00000370192		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000589666	ENST00000474241		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000589666	ENST00000423006		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000589666	ENST00000306031		TCGA	RV	LUSC	TCGA-43-3920-01A	UNK	chr17	73781065	+	DPYD	chr1	98039526	-
5CDS-intron	ENST00000398571	ENST00000398107		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5CDS-5UTR	ENST00000398571	ENST00000340539		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5CDS-intron	ENST00000398571	ENST00000425369		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5CDS-5UTR	ENST00000398571	ENST00000295210		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5CDS-5UTR	ENST00000398571	ENST00000453539		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5UTR-intron	ENST00000472689	ENST00000398107		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5UTR-5UTR	ENST00000472689	ENST00000340539		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5UTR-intron	ENST00000472689	ENST00000425369		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5UTR-5UTR	ENST00000472689	ENST00000295210		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5UTR-5UTR	ENST00000472689	ENST00000453539		TCGA	RV	LUSC	TCGA-56-8083-01A	USP34	chr2	61449754	-	ZNF2	chr2	95841933	+
5CDS-5UTR	ENST00000437079	ENST00000457714		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000437079	ENST00000361589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000437079	ENST00000401917		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000437079	ENST00000545397		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000437079	ENST00000466350		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000287546	ENST00000457714		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000287546	ENST00000361589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000287546	ENST00000401917		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000287546	ENST00000545397		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000287546	ENST00000466350		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000436792	ENST00000457714		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000436792	ENST00000361589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000436792	ENST00000401917		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000436792	ENST00000545397		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000436792	ENST00000466350		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000446204	ENST00000457714		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-5UTR	ENST00000446204	ENST00000361589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000446204	ENST00000401917		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000446204	ENST00000545397		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5CDS-intron	ENST00000446204	ENST00000466350		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-5UTR	ENST00000424463	ENST00000457714		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-5UTR	ENST00000424463	ENST00000361589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000424463	ENST00000401917		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000424463	ENST00000545397		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000424463	ENST00000466350		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-5UTR	ENST00000463687	ENST00000457714		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-5UTR	ENST00000463687	ENST00000361589		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000463687	ENST00000401917		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000463687	ENST00000545397		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
intron-intron	ENST00000463687	ENST00000466350		TCGA	RV	LUSC	TCGA-56-A4BX-01A	VPS8	chr3	184742177	+	NLGN1	chr3	173322069	+
5UTR-5UTR	ENST00000514251	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-5UTR	ENST00000514251	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-5UTR	ENST00000514251	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
5UTR-intron	ENST00000514251	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000321464	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000321464	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000321464	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000321464	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000441582	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000441582	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000441582	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000441582	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000512327	ENST00000286353		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000512327	ENST00000502783		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-5UTR	ENST00000512327	ENST00000393010		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000505502		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000504264		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000508812		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-intron	ENST00000512327	ENST00000393007		TCGA	RV	LUSC	TCGA-77-7142-01A	ZBTB38	chr3	141122873	+	ACPL2	chr3	140978965	+
intron-3CDS	ENST00000494295	ENST00000372899		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-3CDS	ENST00000494295	ENST00000372901		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-3UTR	ENST00000494295	ENST00000372883		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-intron	ENST00000494295	ENST00000372903		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
5UTR-3CDS	ENST00000370766	ENST00000372899		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
5UTR-3CDS	ENST00000370766	ENST00000372901		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
5UTR-3UTR	ENST00000370766	ENST00000372883		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
5UTR-intron	ENST00000370766	ENST00000372903		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-3CDS	ENST00000370764	ENST00000372899		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-3CDS	ENST00000370764	ENST00000372901		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-3UTR	ENST00000370764	ENST00000372883		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
intron-intron	ENST00000370764	ENST00000372903		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	ZNF75D	chrX	134475693	-	UBR2	chr6	42627394	+
5CDS-5UTR	ENST00000323116	ENST00000433971		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
5CDS-intron	ENST00000323116	ENST00000345063		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
5CDS-intron	ENST00000323116	ENST00000488841		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
intron-5UTR	ENST00000493826	ENST00000433971		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
intron-intron	ENST00000493826	ENST00000345063		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
intron-intron	ENST00000493826	ENST00000488841		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
5CDS-5UTR	ENST00000482794	ENST00000433971		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
5CDS-intron	ENST00000482794	ENST00000345063		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
5CDS-intron	ENST00000482794	ENST00000488841		TCGA	RV	LUSC	TCGA-63-A5MV-01A	ATP11B	chr3	182566345	+	TPRG1	chr3	188741539	+
5UTR-3CDS	ENST00000326505	ENST00000296238		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	CAMK2N2	chr3	183978015	-
intron-3CDS	ENST00000460419	ENST00000296238		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	CAMK2N2	chr3	183978015	-
intron-3CDS	ENST00000465010	ENST00000296238		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	CAMK2N2	chr3	183978015	-
intron-3CDS	ENST00000462559	ENST00000296238		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	CAMK2N2	chr3	183978015	-
In-frame	ENST00000481110	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
Frame-shit	ENST00000440486	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
Frame-shit	ENST00000412135	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
Frame-shit	ENST00000340107	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
Frame-shit	ENST00000260795	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
Frame-shit	ENST00000352904	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUSC	TCGA-22-4607-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1737000	+
5UTR-3CDS	ENST00000336216	ENST00000394885		TCGA	RV	LUSC	TCGA-77-7140-01A	HMG20A	chr15	77713346	+	RCN2	chr15	77224702	+
5UTR-3CDS	ENST00000336216	ENST00000320963		TCGA	RV	LUSC	TCGA-77-7140-01A	HMG20A	chr15	77713346	+	RCN2	chr15	77224702	+
5UTR-intron	ENST00000336216	ENST00000394883		TCGA	RV	LUSC	TCGA-77-7140-01A	HMG20A	chr15	77713346	+	RCN2	chr15	77224702	+
5UTR-3CDS	ENST00000381714	ENST00000394885		TCGA	RV	LUSC	TCGA-77-7140-01A	HMG20A	chr15	77713346	+	RCN2	chr15	77224702	+
5UTR-3CDS	ENST00000381714	ENST00000320963		TCGA	RV	LUSC	TCGA-77-7140-01A	HMG20A	chr15	77713346	+	RCN2	chr15	77224702	+
5UTR-intron	ENST00000381714	ENST00000394883		TCGA	RV	LUSC	TCGA-77-7140-01A	HMG20A	chr15	77713346	+	RCN2	chr15	77224702	+
Frame-shit	ENST00000369483	ENST00000317096		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000369483	ENST00000311101		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000369483	ENST00000435888		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000369486	ENST00000317096		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000369486	ENST00000311101		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000369486	ENST00000435888		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
In-frame	ENST00000318837	ENST00000317096		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000318837	ENST00000311101		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
Frame-shit	ENST00000318837	ENST00000435888		TCGA	RV	LUSC	TCGA-85-7698-01A	IGSF3	chr1	117122014	-	PARL	chr3	183547497	-
In-frame	ENST00000342056	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000342056	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000342056	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000342056	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000355194	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000355194	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000355194	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000355194	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000370398	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000370398	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000370398	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000370398	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000370392	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000370392	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000370392	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000370392	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000355635	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000355635	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000355635	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000355635	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000414165	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000414165	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000414165	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000414165	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000402622	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000402622	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000402622	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000402622	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000403813	ENST00000325590		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000403813	ENST00000356264		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000403813	ENST00000428293		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
5CDS-5UTR	ENST00000403813	ENST00000471913		TCGA	RV	LUSC	TCGA-85-8354-01A	KCNQ5	chr6	73815090	+	AMPH	chr7	38433814	-
In-frame	ENST00000528896	ENST00000360295		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000528896	ENST00000317338		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000528896	ENST00000442608		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000528896	ENST00000335960		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000544884	ENST00000360295		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000544884	ENST00000317338		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000544884	ENST00000442608		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000544884	ENST00000335960		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000389003	ENST00000360295		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000389003	ENST00000317338		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000389003	ENST00000442608		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
In-frame	ENST00000389003	ENST00000335960		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000579924	ENST00000360295		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000579924	ENST00000317338		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000579924	ENST00000442608		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000579924	ENST00000335960		TCGA	RV	LUSC	TCGA-66-2758-01A	KIAA0100	chr17	26945809	-	SEZ6	chr17	27296970	-
5CDS-intron	ENST00000398532	ENST00000449833		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000409161		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000423696		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000338508		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000409530		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000449116		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000357171		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000398532	ENST00000468619		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000449833		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000409161		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000423696		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000338508		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000409530		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000449116		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000357171		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000577454	ENST00000468619		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000449833		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000409161		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000423696		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000338508		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000409530		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000449116		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000357171		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5CDS-intron	ENST00000578648	ENST00000468619		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000449833		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000409161		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000423696		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000338508		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000409530		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000449116		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000357171		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
5UTR-intron	ENST00000579565	ENST00000468619		TCGA	RV	LUSC	TCGA-60-2715-01A	MSL1	chr17	38279633	+	SHANK2	chr11	70742672	-
Frame-shit	ENST00000349945	ENST00000264012		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000349945	ENST00000429102		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000349945	ENST00000581171		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-intron	ENST00000349945	ENST00000569117		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
Frame-shit	ENST00000432919	ENST00000264012		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000432919	ENST00000429102		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000432919	ENST00000581171		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-intron	ENST00000432919	ENST00000569117		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
Frame-shit	ENST00000354436	ENST00000264012		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000354436	ENST00000429102		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000354436	ENST00000581171		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-intron	ENST00000354436	ENST00000569117		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
Frame-shit	ENST00000567239	ENST00000264012		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000567239	ENST00000429102		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000567239	ENST00000581171		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-intron	ENST00000567239	ENST00000569117		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
Frame-shit	ENST00000393742	ENST00000264012		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000393742	ENST00000429102		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000393742	ENST00000581171		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-intron	ENST00000393742	ENST00000569117		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
Frame-shit	ENST00000566899	ENST00000264012		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000566899	ENST00000429102		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-3UTR	ENST00000566899	ENST00000581171		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
5CDS-intron	ENST00000566899	ENST00000569117		TCGA	RV	LUSC	TCGA-94-7557-01A	NFAT5	chr16	69704191	+	CDH3	chr16	68732094	+
Frame-shit	ENST00000361828	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
In-frame	ENST00000361828	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361828	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361828	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361828	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361510	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
In-frame	ENST00000361510	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361510	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361510	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361510	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361150	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
In-frame	ENST00000361150	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361150	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361150	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361150	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361715	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
In-frame	ENST00000361715	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361715	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361715	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361715	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361908	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
In-frame	ENST00000361908	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000361908	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361908	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000361908	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000392438	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
In-frame	ENST00000392438	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
Frame-shit	ENST00000392438	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000392438	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5CDS-intron	ENST00000392438	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000487986	ENST00000264977		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000487986	ENST00000490467		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
intron-3CDS	ENST00000487986	ENST00000334546		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000487986	ENST00000492624		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
intron-intron	ENST00000487986	ENST00000469270		TCGA	RV	LUSC	TCGA-94-7943-01A	OPA1	chr3	193385069	+	PPP2R3A	chr3	135863885	+
5UTR-3CDS	ENST00000409895	ENST00000263736		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000409895	ENST00000535761		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-5UTR	ENST00000409895	ENST00000490133		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000409432	ENST00000263736		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000409432	ENST00000535761		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-5UTR	ENST00000409432	ENST00000490133		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000282412	ENST00000263736		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000282412	ENST00000535761		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-5UTR	ENST00000282412	ENST00000490133		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000378551	ENST00000263736		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000378551	ENST00000535761		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-5UTR	ENST00000378551	ENST00000490133		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
3UTR-3CDS	ENST00000378540	ENST00000263736		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
3UTR-3CDS	ENST00000378540	ENST00000535761		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
3UTR-5UTR	ENST00000378540	ENST00000490133		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000345249	ENST00000263736		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-3CDS	ENST00000345249	ENST00000535761		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
5UTR-5UTR	ENST00000345249	ENST00000490133		TCGA	RV	LUSC	TCGA-52-7809-01A	PPM1B	chr2	44396413	+	SRBD1	chr2	45647033	-
In-frame	ENST00000393203	ENST00000369478		TCGA	RV	LUSC	TCGA-37-A5EN-01A	PTGFRN	chr1	117504290	+	CD2	chr1	117297253	+
In-frame	ENST00000393203	ENST00000369477		TCGA	RV	LUSC	TCGA-37-A5EN-01A	PTGFRN	chr1	117504290	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000496699	ENST00000369478		TCGA	RV	LUSC	TCGA-37-A5EN-01A	PTGFRN	chr1	117504290	+	CD2	chr1	117297253	+
intron-3CDS	ENST00000496699	ENST00000369477		TCGA	RV	LUSC	TCGA-37-A5EN-01A	PTGFRN	chr1	117504290	+	CD2	chr1	117297253	+
5CDS-5UTR	ENST00000411589	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000411589	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000411589	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000359862	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000359862	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000359862	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000442938	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000442938	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000442938	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000544878	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000544878	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000544878	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000354284	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000354284	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000354284	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
intron-5UTR	ENST00000529001	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
intron-5UTR	ENST00000529001	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
intron-3UTR	ENST00000529001	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000354064	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000354064	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000354064	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000533102	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000533102	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000533102	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000313236	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000313236	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000313236	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000524725	ENST00000392883		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-5UTR	ENST00000524725	ENST00000532917		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
5CDS-3UTR	ENST00000524725	ENST00000532903		TCGA	RV	LUSC	TCGA-L3-A524-01A	TMEM25	chr11	118404844	+	CD3G	chr11	118220458	+
Frame-shit	ENST00000400301	ENST00000354177		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000400301	ENST00000361547		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000400301	ENST00000374315		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
5CDS-intron	ENST00000400301	ENST00000494537		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000308271	ENST00000354177		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000308271	ENST00000361547		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000308271	ENST00000374315		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
5CDS-intron	ENST00000308271	ENST00000494537		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-3CDS	ENST00000374732	ENST00000354177		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-3CDS	ENST00000374732	ENST00000361547		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-3CDS	ENST00000374732	ENST00000374315		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-intron	ENST00000374732	ENST00000494537		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000529637	ENST00000354177		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000529637	ENST00000361547		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000529637	ENST00000374315		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
5CDS-intron	ENST00000529637	ENST00000494537		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-3CDS	ENST00000479177	ENST00000354177		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-3CDS	ENST00000479177	ENST00000361547		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-3CDS	ENST00000479177	ENST00000374315		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
intron-intron	ENST00000479177	ENST00000494537		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000421625	ENST00000354177		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000421625	ENST00000361547		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
Frame-shit	ENST00000421625	ENST00000374315		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
5CDS-intron	ENST00000421625	ENST00000494537		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	SEPN1	chr1	26131633	+
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	LUSC	TCGA-85-8580-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	LUSC	TCGA-85-8580-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000480033		TCGA	RV	LUSC	TCGA-85-8580-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	LUSC	TCGA-85-8580-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	LUSC	TCGA-85-8580-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000480033		TCGA	RV	LUSC	TCGA-85-8580-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
Frame-shit	ENST00000317025	ENST00000397166		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000317025	ENST00000520272		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000317025	ENST00000528888		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000317025	ENST00000517385		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000317025	ENST00000529845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000433384	ENST00000397166		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000433384	ENST00000520272		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000433384	ENST00000528888		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000433384	ENST00000517385		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000433384	ENST00000529845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000527502	ENST00000397166		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000527502	ENST00000520272		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000527502	ENST00000528888		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000527502	ENST00000517385		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000527502	ENST00000529845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000316985	ENST00000397166		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
Frame-shit	ENST00000316985	ENST00000520272		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000316985	ENST00000528888		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000316985	ENST00000517385		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-intron	ENST00000316985	ENST00000529845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
intron-3CDS	ENST00000525081	ENST00000397166		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
intron-3CDS	ENST00000525081	ENST00000520272		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
intron-intron	ENST00000525081	ENST00000528888		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
intron-intron	ENST00000525081	ENST00000517385		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
intron-intron	ENST00000525081	ENST00000529845		TCGA	RV	LUSC	TCGA-63-A5MP-01A	WHSC1L1	chr8	38178590	-	DDHD2	chr8	38095607	+
5CDS-5UTR	ENST00000323482	ENST00000372723		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000372722		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000357275		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000372720		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000372717		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000360981		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000372712		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000323482	ENST00000372710		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000372723		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000372722		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000357275		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000372720		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000372717		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000360981		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000372712		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000432802	ENST00000372710		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000372723		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000372722		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000357275		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000372720		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000372717		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000360981		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000372712		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-5UTR	ENST00000376726	ENST00000372710		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000372723		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000372722		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000357275		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000372720		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000372717		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000360981		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000372712		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000484396	ENST00000372710		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000372723		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000372722		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000357275		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000372720		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000372717		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000360981		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000372712		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000537502	ENST00000372710		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000372723		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000372722		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000357275		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000372720		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000372717		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000360981		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000372712		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
intron-5UTR	ENST00000542618	ENST00000372710		TCGA	RV	LUSC	TCGA-22-A5C4-01A	ACSS1	chr20	25038405	-	DBNDD2	chr20	44037100	+
5CDS-intron	ENST00000337565	ENST00000389811		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000337565	ENST00000439055		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000337565	ENST00000340561		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000337565	ENST00000496981		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
intron-intron	ENST00000393253	ENST00000389811		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
intron-intron	ENST00000393253	ENST00000439055		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
intron-intron	ENST00000393253	ENST00000340561		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
intron-intron	ENST00000393253	ENST00000496981		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000357757	ENST00000389811		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000357757	ENST00000439055		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000357757	ENST00000340561		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000357757	ENST00000496981		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000308659	ENST00000389811		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000308659	ENST00000439055		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000308659	ENST00000340561		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000308659	ENST00000496981		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000393256	ENST00000389811		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000393256	ENST00000439055		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000393256	ENST00000340561		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000393256	ENST00000496981		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000405953	ENST00000389811		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000405953	ENST00000439055		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000405953	ENST00000340561		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
5CDS-intron	ENST00000405953	ENST00000496981		TCGA	RV	LUSC	TCGA-46-6025-01A	BCL2L11	chr2	111881716	+	ACOXL	chr2	111875193	+
Frame-shit	ENST00000389532	ENST00000371756		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
5CDS-intron	ENST00000389532	ENST00000465873		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
intron-3CDS	ENST00000312405	ENST00000371756		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
intron-intron	ENST00000312405	ENST00000465873		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
intron-3CDS	ENST00000483991	ENST00000371756		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
intron-intron	ENST00000483991	ENST00000465873		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
Frame-shit	ENST00000409386	ENST00000371756		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
5CDS-intron	ENST00000409386	ENST00000465873		TCGA	RV	LUSC	TCGA-NC-A5HM-01A	CAMSAP1	chr9	138798846	-	UBAC1	chr9	138845599	-
In-frame	ENST00000274695	ENST00000368346		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
In-frame	ENST00000274695	ENST00000392403		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
5CDS-intron	ENST00000274695	ENST00000548830		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
In-frame	ENST00000378624	ENST00000368346		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
In-frame	ENST00000378624	ENST00000392403		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
5CDS-intron	ENST00000378624	ENST00000548830		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
In-frame	ENST00000378610	ENST00000368346		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
In-frame	ENST00000378610	ENST00000392403		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
5CDS-intron	ENST00000378610	ENST00000548830		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
intron-3CDS	ENST00000476517	ENST00000368346		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
intron-3CDS	ENST00000476517	ENST00000392403		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
intron-intron	ENST00000476517	ENST00000548830		TCGA	RV	LUSC	TCGA-33-4587-01A	CDKAL1	chr6	20846409	+	ASH1L	chr1	155349907	-
intron-3CDS	ENST00000395290	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395290	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395290	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395290	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3UTR	ENST00000395290	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000358597	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000358597	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000358597	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000358597	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3UTR	ENST00000358597	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395292	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395292	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395292	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000395292	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3UTR	ENST00000395292	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000310513	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000310513	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000310513	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000310513	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3UTR	ENST00000310513	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000361904	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000361904	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000361904	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000361904	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3UTR	ENST00000361904	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000539455	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000539455	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000539455	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000539455	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3UTR	ENST00000539455	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000531165	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000531165	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000531165	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3CDS	ENST00000531165	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
5UTR-3UTR	ENST00000531165	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000532048	ENST00000426530		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000532048	ENST00000534775		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000532048	ENST00000326656		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3CDS	ENST00000532048	ENST00000326674		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
intron-3UTR	ENST00000532048	ENST00000527079		TCGA	RV	LUSC	TCGA-63-A5MT-01A	CELF1	chr11	47574544	-	PTPMT1	chr11	47587458	+
Frame-shit	ENST00000326840	ENST00000471714		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
Frame-shit	ENST00000326840	ENST00000284322		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000326840	ENST00000495063		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000326840	ENST00000383691		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000326840	ENST00000532144		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
Frame-shit	ENST00000326857	ENST00000471714		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
Frame-shit	ENST00000326857	ENST00000284322		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000326857	ENST00000495063		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000326857	ENST00000383691		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000326857	ENST00000532144		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
intron-3CDS	ENST00000469648	ENST00000471714		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
intron-3CDS	ENST00000469648	ENST00000284322		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
intron-intron	ENST00000469648	ENST00000495063		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
intron-intron	ENST00000469648	ENST00000383691		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
intron-intron	ENST00000469648	ENST00000532144		TCGA	RV	LUSC	TCGA-92-7341-01A	DCBLD2	chr3	98619966	-	ABI3BP	chr3	100499053	-
5CDS-intron	ENST00000273075	ENST00000520408		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000273075	ENST00000310430		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000273075	ENST00000518281		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000273075	ENST00000522110		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000273075	ENST00000518027		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000373972	ENST00000520408		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000373972	ENST00000310430		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000373972	ENST00000518281		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000373972	ENST00000522110		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000373972	ENST00000518027		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000523282	ENST00000520408		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000523282	ENST00000310430		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000523282	ENST00000518281		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000523282	ENST00000522110		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5CDS-intron	ENST00000523282	ENST00000518027		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
intron-intron	ENST00000490371	ENST00000520408		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
intron-intron	ENST00000490371	ENST00000310430		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
intron-intron	ENST00000490371	ENST00000518281		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
intron-intron	ENST00000490371	ENST00000522110		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
intron-intron	ENST00000490371	ENST00000518027		TCGA	RV	LUSC	TCGA-85-7696-01A	DNPEP	chr2	220251008	-	TNKS	chr8	9592375	+
5UTR-3CDS	ENST00000415807	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
5UTR-3UTR	ENST00000415807	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000336824	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000336824	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000416957	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000416957	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
5UTR-3CDS	ENST00000392699	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
5UTR-3UTR	ENST00000392699	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
5UTR-3CDS	ENST00000421757	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
5UTR-3UTR	ENST00000421757	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000423424	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000423424	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000476794	ENST00000454872		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000476794	ENST00000473253		TCGA	RV	LUSC	TCGA-21-1077-01A	FNDC3B	chr3	171757561	+	NAALADL2	chr3	174814580	+
5CDS-5UTR	ENST00000296585	ENST00000407170		TCGA	RV	LUSC	TCGA-63-A5M9-01A	ITGA2	chr5	52379283	+	CEACAM21	chr19	42083552	+
5CDS-3UTR	ENST00000296585	ENST00000482870		TCGA	RV	LUSC	TCGA-63-A5M9-01A	ITGA2	chr5	52379283	+	CEACAM21	chr19	42083552	+
5CDS-3UTR	ENST00000296585	ENST00000187608		TCGA	RV	LUSC	TCGA-63-A5M9-01A	ITGA2	chr5	52379283	+	CEACAM21	chr19	42083552	+
5CDS-3UTR	ENST00000296585	ENST00000401445		TCGA	RV	LUSC	TCGA-63-A5M9-01A	ITGA2	chr5	52379283	+	CEACAM21	chr19	42083552	+
Frame-shit	ENST00000361566	ENST00000381125		TCGA	RV	LUSC	TCGA-56-8304-01A	KRT19	chr17	39679869	-	PFKP	chr10	3177928	+
Frame-shit	ENST00000361566	ENST00000381075		TCGA	RV	LUSC	TCGA-56-8304-01A	KRT19	chr17	39679869	-	PFKP	chr10	3177928	+
5CDS-intron	ENST00000361566	ENST00000421751		TCGA	RV	LUSC	TCGA-56-8304-01A	KRT19	chr17	39679869	-	PFKP	chr10	3177928	+
5CDS-intron	ENST00000361566	ENST00000381072		TCGA	RV	LUSC	TCGA-56-8304-01A	KRT19	chr17	39679869	-	PFKP	chr10	3177928	+
intron-5UTR	ENST00000545844	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000545844	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000545844	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000545844	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000545844	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000567887	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000567887	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000567887	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000567887	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000567887	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000372915	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000372915	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000372915	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000372915	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000372915	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000361689	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000361689	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000361689	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000361689	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000361689	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000539005	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000539005	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000539005	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000539005	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000539005	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000317713	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000317713	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000317713	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000317713	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000317713	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000564288	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000564288	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000564288	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000564288	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000564288	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000289893	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000289893	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000289893	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000289893	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000289893	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000536367	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000536367	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000536367	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000536367	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000536367	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000484793	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000484793	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000484793	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000484793	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000484793	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000602421	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000602421	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000602421	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000602421	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000602421	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000476350	ENST00000372990		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000476350	ENST00000289248		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000476350	ENST00000538156		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000476350	ENST00000372985		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
intron-5UTR	ENST00000476350	ENST00000540558		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39571389	+	RHBDL2	chr1	39385009	-
5UTR-3CDS	ENST00000351960	ENST00000376542		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000351960	ENST00000339157		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-intron	ENST00000351960	ENST00000481556		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000358965	ENST00000376542		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000358965	ENST00000339157		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-intron	ENST00000358965	ENST00000481556		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000393695	ENST00000376542		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000393695	ENST00000339157		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-intron	ENST00000393695	ENST00000481556		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000543450	ENST00000376542		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-3CDS	ENST00000543450	ENST00000339157		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
5UTR-intron	ENST00000543450	ENST00000481556		TCGA	RV	LUSC	TCGA-18-3410-01A	NUMA1	chr11	71780888	-	ABHD12	chr20	25304066	-
In-frame	ENST00000545260	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000545260	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000545693	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000545693	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000350537	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000350537	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000346874	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000346874	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000374789	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000374789	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000374790	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000374790	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000374794	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000374794	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000374788	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
5CDS-intron	ENST00000374788	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-3CDS	ENST00000466092	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-intron	ENST00000466092	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-3CDS	ENST00000374776	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-intron	ENST00000374776	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-3CDS	ENST00000340077	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-intron	ENST00000340077	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-3CDS	ENST00000544292	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-intron	ENST00000544292	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-3CDS	ENST00000374773	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-intron	ENST00000374773	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-3CDS	ENST00000374768	ENST00000377304		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
intron-intron	ENST00000374768	ENST00000493816		TCGA	RV	LUSC	TCGA-77-7140-01A	PARD3	chr10	34558585	-	NSUN6	chr10	18905222	-
In-frame	ENST00000378641	ENST00000378883		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378641	ENST00000378896		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378641	ENST00000378886		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378641	ENST00000265187		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000338037	ENST00000378883		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000338037	ENST00000378896		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000338037	ENST00000378886		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000338037	ENST00000265187		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378637	ENST00000378883		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378637	ENST00000378896		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378637	ENST00000378886		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
In-frame	ENST00000378637	ENST00000265187		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
3UTR-3CDS	ENST00000494924	ENST00000378883		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
3UTR-3CDS	ENST00000494924	ENST00000378896		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
3UTR-3CDS	ENST00000494924	ENST00000378886		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
3UTR-3CDS	ENST00000494924	ENST00000265187		TCGA	RV	LUSC	TCGA-22-A5C4-01A	PLCB1	chr20	8703068	+	MCM8	chr20	5937772	+
Frame-shit	ENST00000221486	ENST00000549706		TCGA	RV	LUSC	TCGA-63-5128-01A	RNASEH2A	chr19	12918320	+	BEST2	chr19	12868465	+
In-frame	ENST00000221486	ENST00000553030		TCGA	RV	LUSC	TCGA-63-5128-01A	RNASEH2A	chr19	12918320	+	BEST2	chr19	12868465	+
In-frame	ENST00000221486	ENST00000042931		TCGA	RV	LUSC	TCGA-63-5128-01A	RNASEH2A	chr19	12918320	+	BEST2	chr19	12868465	+
intron-3CDS	ENST00000394609	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000394609	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-3CDS	ENST00000405240	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000405240	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-3CDS	ENST00000357376	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000357376	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
Frame-shit	ENST00000317610	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
5CDS-5UTR	ENST00000317610	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
Frame-shit	ENST00000357732	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
5CDS-5UTR	ENST00000357732	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
Frame-shit	ENST00000337526	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
5CDS-5UTR	ENST00000337526	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-3CDS	ENST00000394611	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000394611	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-3CDS	ENST00000404909	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000404909	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-3CDS	ENST00000486085	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000486085	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-3CDS	ENST00000354474	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
intron-5UTR	ENST00000354474	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
In-frame	ENST00000402434	ENST00000289359		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
5CDS-5UTR	ENST00000402434	ENST00000466880		TCGA	RV	LUSC	TCGA-66-2756-01A	RTN4	chr2	55276881	-	MITD1	chr2	99790479	-
In-frame	ENST00000394121	ENST00000264639		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
5CDS-5UTR	ENST00000394121	ENST00000541736		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
In-frame	ENST00000264637	ENST00000264639		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
5CDS-5UTR	ENST00000264637	ENST00000541736		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
In-frame	ENST00000584985	ENST00000264639		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
5CDS-5UTR	ENST00000584985	ENST00000541736		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
In-frame	ENST00000450525	ENST00000264639		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
5CDS-5UTR	ENST00000450525	ENST00000541736		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
In-frame	ENST00000546243	ENST00000264639		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
5CDS-5UTR	ENST00000546243	ENST00000541736		TCGA	RV	LUSC	TCGA-85-8479-01A	THRA	chr17	38241068	+	PSMD3	chr17	38142828	+
Frame-shit	ENST00000253024	ENST00000354590		TCGA	RV	LUSC	TCGA-21-1082-01A	TRIM28	chr19	59056464	+	ZBTB45	chr19	59029040	-
Frame-shit	ENST00000253024	ENST00000594051		TCGA	RV	LUSC	TCGA-21-1082-01A	TRIM28	chr19	59056464	+	ZBTB45	chr19	59029040	-
Frame-shit	ENST00000253024	ENST00000600990		TCGA	RV	LUSC	TCGA-21-1082-01A	TRIM28	chr19	59056464	+	ZBTB45	chr19	59029040	-
Frame-shit	ENST00000341753	ENST00000354590		TCGA	RV	LUSC	TCGA-21-1082-01A	TRIM28	chr19	59056464	+	ZBTB45	chr19	59029040	-
Frame-shit	ENST00000341753	ENST00000594051		TCGA	RV	LUSC	TCGA-21-1082-01A	TRIM28	chr19	59056464	+	ZBTB45	chr19	59029040	-
Frame-shit	ENST00000341753	ENST00000600990		TCGA	RV	LUSC	TCGA-21-1082-01A	TRIM28	chr19	59056464	+	ZBTB45	chr19	59029040	-
In-frame	ENST00000361246	ENST00000553891		TCGA	RV	LUSC	TCGA-NC-A5HI-01A	CDC42BPB	chr14	103452824	-	ZFYVE1	chr14	73465023	-
In-frame	ENST00000361246	ENST00000318876		TCGA	RV	LUSC	TCGA-NC-A5HI-01A	CDC42BPB	chr14	103452824	-	ZFYVE1	chr14	73465023	-
In-frame	ENST00000361246	ENST00000556143		TCGA	RV	LUSC	TCGA-NC-A5HI-01A	CDC42BPB	chr14	103452824	-	ZFYVE1	chr14	73465023	-
5CDS-intron	ENST00000361246	ENST00000394207		TCGA	RV	LUSC	TCGA-NC-A5HI-01A	CDC42BPB	chr14	103452824	-	ZFYVE1	chr14	73465023	-
5CDS-intron	ENST00000361246	ENST00000555072		TCGA	RV	LUSC	TCGA-NC-A5HI-01A	CDC42BPB	chr14	103452824	-	ZFYVE1	chr14	73465023	-
5CDS-intron	ENST00000361246	ENST00000554145		TCGA	RV	LUSC	TCGA-NC-A5HI-01A	CDC42BPB	chr14	103452824	-	ZFYVE1	chr14	73465023	-
Frame-shit	ENST00000262367	ENST00000303230		TCGA	RV	LUSC	TCGA-60-2714-01A	CREBBP	chr16	3900298	-	HCN1	chr5	45645710	-
Frame-shit	ENST00000382070	ENST00000303230		TCGA	RV	LUSC	TCGA-60-2714-01A	CREBBP	chr16	3900298	-	HCN1	chr5	45645710	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUSC	TCGA-92-8065-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000378814	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378814	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378814	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000259711	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000259711	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000259711	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378843	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378843	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378843	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378826	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378826	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378826	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378816	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
In-frame	ENST00000378816	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
5CDS-intron	ENST00000378816	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-3CDS	ENST00000502704	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-3CDS	ENST00000502704	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000502704	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-3CDS	ENST00000503342	ENST00000396268		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-3CDS	ENST00000503342	ENST00000376266		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000396263		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000451521		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000480060		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000416163		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000400351		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000425620		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000466904		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000400352		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000414614		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000383341		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000474554		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000419528		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000428677		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000433804		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000481855		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000400412		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000400406		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000383527		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000470755		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000447252		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000452333		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000416392		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
intron-intron	ENST00000503342	ENST00000467461		TCGA	RV	LUSC	TCGA-77-8138-01A	KIF13A	chr6	17849608	-	CCHCR1	chr6	31113585	-
Frame-shit	ENST00000310614	ENST00000336898		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
Frame-shit	ENST00000310614	ENST00000376282		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000310614	ENST00000529095		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000310614	ENST00000526177		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000310614	ENST00000533784		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000310614	ENST00000529721		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-5UTR	ENST00000310614	ENST00000533805		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-3UTR	ENST00000310614	ENST00000443276		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-3CDS	ENST00000535529	ENST00000336898		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-3CDS	ENST00000535529	ENST00000376282		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000535529	ENST00000529095		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000535529	ENST00000526177		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000535529	ENST00000533784		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000535529	ENST00000529721		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-5UTR	ENST00000535529	ENST00000533805		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-3UTR	ENST00000535529	ENST00000443276		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-3CDS	ENST00000411840	ENST00000336898		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-3CDS	ENST00000411840	ENST00000376282		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000411840	ENST00000529095		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000411840	ENST00000526177		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000411840	ENST00000533784		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-intron	ENST00000411840	ENST00000529721		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-5UTR	ENST00000411840	ENST00000533805		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5UTR-3UTR	ENST00000411840	ENST00000443276		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-3CDS	ENST00000398483	ENST00000336898		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-3CDS	ENST00000398483	ENST00000376282		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000398483	ENST00000529095		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000398483	ENST00000526177		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000398483	ENST00000533784		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000398483	ENST00000529721		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-5UTR	ENST00000398483	ENST00000533805		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-3UTR	ENST00000398483	ENST00000443276		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
Frame-shit	ENST00000542303	ENST00000336898		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
Frame-shit	ENST00000542303	ENST00000376282		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000542303	ENST00000529095		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000542303	ENST00000526177		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000542303	ENST00000533784		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-intron	ENST00000542303	ENST00000529721		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-5UTR	ENST00000542303	ENST00000533805		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
5CDS-3UTR	ENST00000542303	ENST00000443276		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-3CDS	ENST00000314282	ENST00000336898		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-3CDS	ENST00000314282	ENST00000376282		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000314282	ENST00000529095		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000314282	ENST00000526177		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000314282	ENST00000533784		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-intron	ENST00000314282	ENST00000529721		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-5UTR	ENST00000314282	ENST00000533805		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
intron-3UTR	ENST00000314282	ENST00000443276		TCGA	RV	LUSC	TCGA-37-4135-01A	MRPL48	chr11	73519395	+	GDPD5	chr11	75155540	-
In-frame	ENST00000413040	ENST00000358849		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000413040	ENST00000542328		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000413040	ENST00000297504		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000413040	ENST00000356058		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000413040	ENST00000498578		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000413040	ENST00000477719		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000413040	ENST00000477092		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000413040	ENST00000493338		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000568733	ENST00000358849		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000568733	ENST00000542328		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000568733	ENST00000297504		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000568733	ENST00000356058		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000568733	ENST00000498578		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000568733	ENST00000477719		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000568733	ENST00000477092		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000568733	ENST00000493338		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000566856	ENST00000358849		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000566856	ENST00000542328		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000566856	ENST00000297504		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000566856	ENST00000356058		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000566856	ENST00000498578		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000566856	ENST00000477719		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000566856	ENST00000477092		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000566856	ENST00000493338		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000355851	ENST00000358849		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000355851	ENST00000542328		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
In-frame	ENST00000355851	ENST00000297504		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000355851	ENST00000356058		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-3UTR	ENST00000355851	ENST00000498578		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000355851	ENST00000477719		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000355851	ENST00000477092		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
5CDS-intron	ENST00000355851	ENST00000493338		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-3CDS	ENST00000477666	ENST00000358849		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-3CDS	ENST00000477666	ENST00000542328		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-3CDS	ENST00000477666	ENST00000297504		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-3UTR	ENST00000477666	ENST00000356058		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-3UTR	ENST00000477666	ENST00000498578		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-intron	ENST00000477666	ENST00000477719		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-intron	ENST00000477666	ENST00000477092		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-intron	ENST00000477666	ENST00000493338		TCGA	RV	LUSC	TCGA-66-2800-01A	NUB1	chr7	151042552	+	ABCB8	chr7	150742296	+
intron-3CDS	ENST00000372445	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000372445	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000372445	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-3CDS	ENST00000436109	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000436109	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000436109	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
5UTR-3CDS	ENST00000372444	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
5UTR-intron	ENST00000372444	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
5UTR-intron	ENST00000372444	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-3CDS	ENST00000372449	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000372449	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000372449	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-3CDS	ENST00000259751	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000259751	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000259751	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-3CDS	ENST00000372452	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000372452	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000372452	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-3CDS	ENST00000438588	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000438588	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000438588	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-3CDS	ENST00000483640	ENST00000372530		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000483640	ENST00000443426		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
intron-intron	ENST00000483640	ENST00000244533		TCGA	RV	LUSC	TCGA-85-8353-01A	TJAP1	chr6	43446456	+	ABCC10	chr6	43409600	+
Frame-shit	ENST00000525566	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5CDS-intron	ENST00000525566	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
Frame-shit	ENST00000429002	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5CDS-intron	ENST00000429002	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-3CDS	ENST00000503506	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-intron	ENST00000503506	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
Frame-shit	ENST00000526691	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5CDS-intron	ENST00000526691	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
Frame-shit	ENST00000388854	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5CDS-intron	ENST00000388854	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-3CDS	ENST00000354940	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-intron	ENST00000354940	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-3CDS	ENST00000526390	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-intron	ENST00000526390	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-3CDS	ENST00000529546	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-intron	ENST00000529546	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-3CDS	ENST00000540716	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-intron	ENST00000540716	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-3CDS	ENST00000524698	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5UTR-intron	ENST00000524698	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
Frame-shit	ENST00000542918	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5CDS-intron	ENST00000542918	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
Frame-shit	ENST00000378070	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
5CDS-intron	ENST00000378070	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-3CDS	ENST00000397736	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-intron	ENST00000397736	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-3CDS	ENST00000427956	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-intron	ENST00000427956	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-3CDS	ENST00000526950	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-intron	ENST00000526950	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-3CDS	ENST00000526006	ENST00000229330		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
intron-intron	ENST00000526006	ENST00000550335		TCGA	RV	LUSC	TCGA-43-2578-01A	TXNRD1	chr12	104682818	+	HCFC2	chr12	104474524	+
In-frame	ENST00000262577	ENST00000220966		TCGA	RV	LUSC	TCGA-66-2793-01A	ZC3H3	chr8	144618427	-	PYCRL	chr8	144690296	-
5CDS-5UTR	ENST00000262577	ENST00000377579		TCGA	RV	LUSC	TCGA-66-2793-01A	ZC3H3	chr8	144618427	-	PYCRL	chr8	144690296	-
5CDS-5UTR	ENST00000262577	ENST00000495276		TCGA	RV	LUSC	TCGA-66-2793-01A	ZC3H3	chr8	144618427	-	PYCRL	chr8	144690296	-
5CDS-intron	ENST00000248553	ENST00000534307		TCGA	RV	LUSC	TCGA-98-A53I-01A	HSPB1	chr7	75933612	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000248553	ENST00000528302		TCGA	RV	LUSC	TCGA-98-A53I-01A	HSPB1	chr7	75933612	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000248553	ENST00000322535		TCGA	RV	LUSC	TCGA-98-A53I-01A	HSPB1	chr7	75933612	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000429938	ENST00000534307		TCGA	RV	LUSC	TCGA-98-A53I-01A	HSPB1	chr7	75933612	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000429938	ENST00000528302		TCGA	RV	LUSC	TCGA-98-A53I-01A	HSPB1	chr7	75933612	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000429938	ENST00000322535		TCGA	RV	LUSC	TCGA-98-A53I-01A	HSPB1	chr7	75933612	+	SF3B2	chr11	65836145	+
Frame-shit	ENST00000293872	ENST00000262320		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000293872	ENST00000354866		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000293872	ENST00000481769		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000337351	ENST00000262320		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000337351	ENST00000354866		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000337351	ENST00000481769		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397783	ENST00000262320		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397783	ENST00000354866		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000397783	ENST00000481769		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-3CDS	ENST00000397780	ENST00000262320		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-3CDS	ENST00000397780	ENST00000354866		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-5UTR	ENST00000397780	ENST00000481769		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-3CDS	ENST00000494366	ENST00000262320		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-3CDS	ENST00000494366	ENST00000354866		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-5UTR	ENST00000494366	ENST00000481769		TCGA	RV	LUSC	TCGA-98-A53A-01A	LUC7L	chr16	277241	-	AXIN1	chr16	364683	-
5UTR-5UTR	ENST00000355630	ENST00000491545		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000355630	ENST00000435456		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-intron	ENST00000355630	ENST00000402844		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000355630	ENST00000544408		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000355630	ENST00000542412		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000396617	ENST00000491545		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000396617	ENST00000435456		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-intron	ENST00000396617	ENST00000402844		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000396617	ENST00000544408		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000396617	ENST00000542412		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000402042	ENST00000491545		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000402042	ENST00000435456		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-intron	ENST00000402042	ENST00000402844		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000402042	ENST00000544408		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000402042	ENST00000542412		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000466278	ENST00000491545		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000466278	ENST00000435456		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-intron	ENST00000466278	ENST00000402844		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000466278	ENST00000544408		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
5UTR-5UTR	ENST00000466278	ENST00000542412		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000407029	ENST00000491545		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000407029	ENST00000435456		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-intron	ENST00000407029	ENST00000402844		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000407029	ENST00000544408		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000407029	ENST00000542412		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000402630	ENST00000491545		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000402630	ENST00000435456		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-intron	ENST00000402630	ENST00000402844		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000402630	ENST00000544408		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
intron-5UTR	ENST00000402630	ENST00000542412		TCGA	RV	LUSC	TCGA-60-2706-01A	MKL1	chr22	40990678	-	SLC25A17	chr22	41195087	-
In-frame	ENST00000252711	ENST00000321276		TCGA	RV	LUSC	TCGA-39-5035-01A	NDUFA10	chr2	240929491	-	SGPP2	chr2	223386486	+
intron-3CDS	ENST00000471378	ENST00000321276		TCGA	RV	LUSC	TCGA-39-5035-01A	NDUFA10	chr2	240929491	-	SGPP2	chr2	223386486	+
In-frame	ENST00000404554	ENST00000321276		TCGA	RV	LUSC	TCGA-39-5035-01A	NDUFA10	chr2	240929491	-	SGPP2	chr2	223386486	+
In-frame	ENST00000307300	ENST00000321276		TCGA	RV	LUSC	TCGA-39-5035-01A	NDUFA10	chr2	240929491	-	SGPP2	chr2	223386486	+
intron-3CDS	ENST00000407129	ENST00000321276		TCGA	RV	LUSC	TCGA-39-5035-01A	NDUFA10	chr2	240929491	-	SGPP2	chr2	223386486	+
5UTR-5UTR	ENST00000282516	ENST00000375571		TCGA	RV	LUSC	TCGA-77-8153-01A	NIPBL	chr5	36877280	+	MAPRE1	chr20	31413731	+
5UTR-5UTR	ENST00000448238	ENST00000375571		TCGA	RV	LUSC	TCGA-77-8153-01A	NIPBL	chr5	36877280	+	MAPRE1	chr20	31413731	+
intron-5UTR	ENST00000504430	ENST00000375571		TCGA	RV	LUSC	TCGA-77-8153-01A	NIPBL	chr5	36877280	+	MAPRE1	chr20	31413731	+
Frame-shit	ENST00000379161	ENST00000243167		TCGA	RV	LUSC	TCGA-85-A4JC-01A	NUFIP1	chr13	45533516	-	FAAH	chr1	46879119	+
5CDS-intron	ENST00000379161	ENST00000493735		TCGA	RV	LUSC	TCGA-85-A4JC-01A	NUFIP1	chr13	45533516	-	FAAH	chr1	46879119	+
Frame-shit	ENST00000409003	ENST00000267484		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000409003	ENST00000395090		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000409003	ENST00000342503		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
5CDS-5UTR	ENST00000409003	ENST00000557422		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000314727	ENST00000267484		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000314727	ENST00000395090		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000314727	ENST00000342503		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
5CDS-5UTR	ENST00000314727	ENST00000557422		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
intron-3CDS	ENST00000527515	ENST00000267484		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
intron-3CDS	ENST00000527515	ENST00000395090		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
intron-3CDS	ENST00000527515	ENST00000342503		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
intron-5UTR	ENST00000527515	ENST00000557422		TCGA	RV	LUSC	TCGA-22-4594-01A	SAMD12	chr8	119634043	-	RTN1	chr14	60074210	-
In-frame	ENST00000360843	ENST00000324768		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
5CDS-intron	ENST00000360843	ENST00000495455		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
In-frame	ENST00000431350	ENST00000324768		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
5CDS-intron	ENST00000431350	ENST00000495455		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
In-frame	ENST00000442919	ENST00000324768		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
5CDS-intron	ENST00000442919	ENST00000495455		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
Frame-shit	ENST00000521943	ENST00000324768		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
5CDS-intron	ENST00000521943	ENST00000495455		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
In-frame	ENST00000434911	ENST00000324768		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
5CDS-intron	ENST00000434911	ENST00000495455		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
intron-3CDS	ENST00000486857	ENST00000324768		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
intron-intron	ENST00000486857	ENST00000495455		TCGA	RV	LUSC	TCGA-46-6025-01A	TLK1	chr2	171902684	-	CREG2	chr2	101971828	-
In-frame	ENST00000327787	ENST00000331134		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
Frame-shit	ENST00000327787	ENST00000374747		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
In-frame	ENST00000327787	ENST00000539314		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-5UTR	ENST00000327787	ENST00000572760		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-5UTR	ENST00000327787	ENST00000573876		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-intron	ENST00000327787	ENST00000574344		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
In-frame	ENST00000425898	ENST00000331134		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
Frame-shit	ENST00000425898	ENST00000374747		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
In-frame	ENST00000425898	ENST00000539314		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-5UTR	ENST00000425898	ENST00000572760		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-5UTR	ENST00000425898	ENST00000573876		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-intron	ENST00000425898	ENST00000574344		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
In-frame	ENST00000537152	ENST00000331134		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
Frame-shit	ENST00000537152	ENST00000374747		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
In-frame	ENST00000537152	ENST00000539314		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-5UTR	ENST00000537152	ENST00000572760		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-5UTR	ENST00000537152	ENST00000573876		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-intron	ENST00000537152	ENST00000574344		TCGA	RV	LUSC	TCGA-56-5897-01A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79532633	-
5CDS-intron	ENST00000360184	ENST00000470188		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000360184	ENST00000542731		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000360184	ENST00000343407		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000360184	ENST00000317716		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000360184	ENST00000478080		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000360184	ENST00000541203		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000556791	ENST00000470188		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000556791	ENST00000542731		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000556791	ENST00000343407		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000556791	ENST00000317716		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000556791	ENST00000478080		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
intron-intron	ENST00000556791	ENST00000541203		TCGA	RV	LUSC	TCGA-98-A53H-01A	DYNC1H1	chr14	102517128	+	CDHR3	chr7	105668108	+
5CDS-intron	ENST00000392562	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000392562	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000316804	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000316804	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000316615	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000316615	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000392563	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000392563	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000392564	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000392564	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000578961	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
5CDS-intron	ENST00000578961	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
intron-intron	ENST00000462266	ENST00000491186		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
intron-intron	ENST00000462266	ENST00000325318		TCGA	RV	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	TCTEX1D2	chr3	196022940	-
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-3CDS	ENST00000502484	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-3CDS	ENST00000502484	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-3CDS	ENST00000502484	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
5UTR-intron	ENST00000502484	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000546160	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000546160	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000546160	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000546160	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000453022		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000545085		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	LUSC	TCGA-77-8143-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59943360	-
In-frame	ENST00000331683	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000331683	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000331683	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000331683	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
5CDS-intron	ENST00000331683	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
Frame-shit	ENST00000374309	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
Frame-shit	ENST00000374309	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
Frame-shit	ENST00000374309	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
Frame-shit	ENST00000374309	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
5CDS-intron	ENST00000374309	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000432529	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000432529	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000432529	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000432529	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
5CDS-intron	ENST00000432529	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000413312	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000413312	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000413312	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000413312	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
5CDS-intron	ENST00000413312	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000272898	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000272898	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000272898	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000272898	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
5CDS-intron	ENST00000272898	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000447990	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000447990	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000447990	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
In-frame	ENST00000447990	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
5CDS-intron	ENST00000447990	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
3UTR-3CDS	ENST00000414961	ENST00000264414		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
3UTR-3CDS	ENST00000414961	ENST00000344951		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
3UTR-3CDS	ENST00000414961	ENST00000409096		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
3UTR-3CDS	ENST00000414961	ENST00000409777		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
3UTR-intron	ENST00000414961	ENST00000432260		TCGA	RV	LUSC	TCGA-O2-A52V-01A	SPAG16	chr2	214162081	+	CUL3	chr2	225346795	-
intron-3CDS	ENST00000598155	ENST00000392138		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
intron-3CDS	ENST00000598155	ENST00000590414		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
intron-3CDS	ENST00000598155	ENST00000339503		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
intron-3CDS	ENST00000598155	ENST00000536220		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
intron-3CDS	ENST00000598155	ENST00000357309		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
intron-3UTR	ENST00000598155	ENST00000585724		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
intron-intron	ENST00000598155	ENST00000480587		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
Frame-shit	ENST00000245934	ENST00000392138		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
Frame-shit	ENST00000245934	ENST00000590414		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
Frame-shit	ENST00000245934	ENST00000339503		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
Frame-shit	ENST00000245934	ENST00000536220		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
Frame-shit	ENST00000245934	ENST00000357309		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
5CDS-3UTR	ENST00000245934	ENST00000585724		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
5CDS-intron	ENST00000245934	ENST00000480587		TCGA	RV	LUSC	TCGA-66-2759-01A	SYMPK	chr19	46330768	-	ZNF573	chr19	38231095	-
5CDS-intron	ENST00000233143	ENST00000513761		TCGA	RV	LUSC	TCGA-39-5011-01A	TMSB10	chr2	85133795	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233143	ENST00000347613		TCGA	RV	LUSC	TCGA-39-5011-01A	TMSB10	chr2	85133795	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233143	ENST00000360642		TCGA	RV	LUSC	TCGA-39-5011-01A	TMSB10	chr2	85133795	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233143	ENST00000504131		TCGA	RV	LUSC	TCGA-39-5011-01A	TMSB10	chr2	85133795	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233143	ENST00000506924		TCGA	RV	LUSC	TCGA-39-5011-01A	TMSB10	chr2	85133795	+	CLCN3	chr4	170623929	+
intron-3CDS	ENST00000537855	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000537855	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000537855	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000537855	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000537855	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000537855	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000537855	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000379096	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
Frame-shit	ENST00000518937	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000519303	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000517427	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000520527	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000448733	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000379097	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000522455		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000521695		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000521268		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000518566		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000517638		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000523850		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
intron-3CDS	ENST00000523395	ENST00000521376		TCGA	RV	LUSC	TCGA-77-8009-01A	TPD52	chr8	81083660	-	RALYL	chr8	85785519	+
In-frame	ENST00000207549	ENST00000586717		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
In-frame	ENST00000207549	ENST00000319129		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
In-frame	ENST00000207549	ENST00000389570		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5CDS-intron	ENST00000207549	ENST00000586631		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5CDS-intron	ENST00000207549	ENST00000588478		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
In-frame	ENST00000412096	ENST00000586717		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
In-frame	ENST00000412096	ENST00000319129		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
In-frame	ENST00000412096	ENST00000389570		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5CDS-intron	ENST00000412096	ENST00000586631		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5CDS-intron	ENST00000412096	ENST00000588478		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5UTR-3CDS	ENST00000587504	ENST00000586717		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5UTR-3CDS	ENST00000587504	ENST00000319129		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5UTR-3CDS	ENST00000587504	ENST00000389570		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5UTR-intron	ENST00000587504	ENST00000586631		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5UTR-intron	ENST00000587504	ENST00000588478		TCGA	RV	LUSC	TCGA-94-8491-01A	UNC13D	chr17	73838514	-	FBF1	chr17	73919719	-
5CDS-5UTR	ENST00000377191	ENST00000314124		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000377191	ENST00000435575		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000377191	ENST00000435218		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000377191	ENST00000476331		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000377191	ENST00000431022		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000377191	ENST00000264728		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430571	ENST00000314124		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430571	ENST00000435575		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430571	ENST00000435218		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000430571	ENST00000476331		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000430571	ENST00000431022		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000430571	ENST00000264728		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000539513	ENST00000314124		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000539513	ENST00000435575		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000539513	ENST00000435218		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000539513	ENST00000476331		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000539513	ENST00000431022		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000539513	ENST00000264728		TCGA	RV	LUSC	TCGA-52-7810-01A	XRN2	chr20	21335510	+	TMEM40	chr3	12791339	-
Frame-shit	ENST00000584601	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000584601	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000406381	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000406381	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000541774	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000541774	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000445658	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000445658	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000540147	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000540147	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000584450	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000584450	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000269571	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000269571	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000578199	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000578199	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000540042	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
Frame-shit	ENST00000540042	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
intron-3CDS	ENST00000584888	ENST00000309889		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
intron-3CDS	ENST00000584888	ENST00000578283		TCGA	RV	LUSC	TCGA-56-A4BY-01A	ERBB2	chr17	37872858	+	TCAP	chr17	37821969	+
5UTR-3CDS	ENST00000378097	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-5UTR	ENST00000378097	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-intron	ENST00000378097	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-intron	ENST00000378097	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000352527	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000352527	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000352527	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000352527	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000341524	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000341524	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000341524	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000341524	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000164247	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000164247	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000164247	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000164247	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000378083	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000378083	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000378083	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000378083	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000378111	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000378111	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000378111	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000378111	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-3CDS	ENST00000378092	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-5UTR	ENST00000378092	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-intron	ENST00000378092	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-intron	ENST00000378092	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000602612	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000602612	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000602612	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000602612	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000378087	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000378087	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000378087	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000378087	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000459822	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000459822	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000459822	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000459822	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-3CDS	ENST00000458166	ENST00000265421		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-5UTR	ENST00000458166	ENST00000538005		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000458166	ENST00000530566		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
intron-intron	ENST00000458166	ENST00000521492		TCGA	RV	LUSC	TCGA-46-6025-01A	KCNAB2	chr1	6052848	+	POLB	chr8	42202471	+
5UTR-3CDS	ENST00000005257	ENST00000309930		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
5UTR-3CDS	ENST00000005257	ENST00000401647		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
5UTR-3CDS	ENST00000005257	ENST00000335693		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
5UTR-intron	ENST00000005257	ENST00000464028		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
5UTR-intron	ENST00000005257	ENST00000540834		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
3UTR-3CDS	ENST00000468201	ENST00000309930		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
3UTR-3CDS	ENST00000468201	ENST00000401647		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
3UTR-3CDS	ENST00000468201	ENST00000335693		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
3UTR-intron	ENST00000468201	ENST00000464028		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
3UTR-intron	ENST00000468201	ENST00000540834		TCGA	RV	LUSC	TCGA-85-8354-01A	RALA	chr7	39663424	+	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000318522	ENST00000378669		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000318522	ENST00000482463		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000318522	ENST00000234301		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000318522	ENST00000463055		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000402711	ENST00000378669		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000402711	ENST00000482463		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000402711	ENST00000234301		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000402711	ENST00000463055		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
intron-intron	ENST00000482660	ENST00000378669		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
intron-intron	ENST00000482660	ENST00000482463		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
intron-intron	ENST00000482660	ENST00000234301		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
intron-intron	ENST00000482660	ENST00000463055		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000401738	ENST00000378669		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000401738	ENST00000482463		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000401738	ENST00000234301		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-intron	ENST00000401738	ENST00000463055		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5UTR-intron	ENST00000453191	ENST00000378669		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5UTR-intron	ENST00000453191	ENST00000482463		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5UTR-intron	ENST00000453191	ENST00000234301		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5UTR-intron	ENST00000453191	ENST00000463055		TCGA	RV	LUSC	TCGA-77-8143-01A	EML4	chr2	42531691	+	COX7A2L	chr2	42561009	-
5CDS-5UTR	ENST00000395925	ENST00000419147		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5CDS-5UTR	ENST00000395925	ENST00000412227		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5CDS-5UTR	ENST00000395925	ENST00000331536		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5CDS-5UTR	ENST00000395925	ENST00000442291		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5UTR-5UTR	ENST00000479210	ENST00000419147		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5UTR-5UTR	ENST00000479210	ENST00000412227		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5UTR-5UTR	ENST00000479210	ENST00000331536		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
5UTR-5UTR	ENST00000479210	ENST00000442291		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
intron-5UTR	ENST00000437480	ENST00000419147		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
intron-5UTR	ENST00000437480	ENST00000412227		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
intron-5UTR	ENST00000437480	ENST00000331536		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
intron-5UTR	ENST00000437480	ENST00000442291		TCGA	RV	LUSC	TCGA-77-7465-01A	GLI3	chr7	42116351	-	CROT	chr7	86975656	+
Frame-shit	ENST00000330574	ENST00000524958		TCGA	RV	LUSC	TCGA-NK-A7XE-01A	INTS5	chr11	62420642	-	C11orf48	chr11	62430805	-
In-frame	ENST00000330574	ENST00000354588		TCGA	RV	LUSC	TCGA-NK-A7XE-01A	INTS5	chr11	62420642	-	C11orf48	chr11	62430805	-
In-frame	ENST00000330574	ENST00000431002		TCGA	RV	LUSC	TCGA-NK-A7XE-01A	INTS5	chr11	62420642	-	C11orf48	chr11	62430805	-
In-frame	ENST00000330574	ENST00000532208		TCGA	RV	LUSC	TCGA-NK-A7XE-01A	INTS5	chr11	62420642	-	C11orf48	chr11	62430805	-
Frame-shit	ENST00000330574	ENST00000525675		TCGA	RV	LUSC	TCGA-NK-A7XE-01A	INTS5	chr11	62420642	-	C11orf48	chr11	62430805	-
intron-intron	ENST00000231751	ENST00000371754		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000231751	ENST00000469991		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000231751	ENST00000371752		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000231751	ENST00000396105		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000426532	ENST00000371754		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000426532	ENST00000469991		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000426532	ENST00000371752		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000426532	ENST00000396105		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000417439	ENST00000371754		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000417439	ENST00000469991		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000417439	ENST00000371752		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000417439	ENST00000396105		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000493056	ENST00000371754		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000493056	ENST00000469991		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000493056	ENST00000371752		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000493056	ENST00000396105		TCGA	RV	LUSC	TCGA-85-8355-01A	LTF	chr3	46477510	-	ZNFX1	chr20	47863418	-
Frame-shit	ENST00000255882	ENST00000379933		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000255882	ENST00000379938		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000255882	ENST00000334984		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
Frame-shit	ENST00000255882	ENST00000349384		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
In-frame	ENST00000572273	ENST00000379933		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
In-frame	ENST00000572273	ENST00000379938		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
In-frame	ENST00000572273	ENST00000334984		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
In-frame	ENST00000572273	ENST00000349384		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000414196	ENST00000379933		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000414196	ENST00000379938		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000414196	ENST00000334984		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000414196	ENST00000349384		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000466162	ENST00000379933		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000466162	ENST00000379938		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000466162	ENST00000334984		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
intron-3CDS	ENST00000466162	ENST00000349384		TCGA	RV	LUSC	TCGA-21-1081-01A	PI4KA	chr22	21188850	-	RREB1	chr6	7211037	+
In-frame	ENST00000256190	ENST00000331079		TCGA	RV	LUSC	TCGA-37-4132-01A	SBF2	chr11	10315562	-	PRMT3	chr11	20473676	+
In-frame	ENST00000256190	ENST00000437750		TCGA	RV	LUSC	TCGA-37-4132-01A	SBF2	chr11	10315562	-	PRMT3	chr11	20473676	+
intron-3CDS	ENST00000527019	ENST00000331079		TCGA	RV	LUSC	TCGA-37-4132-01A	SBF2	chr11	10315562	-	PRMT3	chr11	20473676	+
intron-3CDS	ENST00000527019	ENST00000437750		TCGA	RV	LUSC	TCGA-37-4132-01A	SBF2	chr11	10315562	-	PRMT3	chr11	20473676	+
5CDS-5UTR	ENST00000430629	ENST00000259698		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000430629	ENST00000538035		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000430629	ENST00000510784		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000430629	ENST00000378023		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000430629	ENST00000540914		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000430629	ENST00000473070		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000536657	ENST00000259698		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000536657	ENST00000538035		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000536657	ENST00000510784		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000536657	ENST00000378023		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-5UTR	ENST00000536657	ENST00000540914		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000536657	ENST00000473070		TCGA	RV	LUSC	TCGA-66-2765-01A	WASF2	chr1	27755271	-	FAM65B	chr6	24876045	-
5CDS-intron	ENST00000238855	ENST00000371197		TCGA	RV	LUSC	TCGA-98-8023-01A	AFTPH	chr2	64796813	+	GLYATL3	chr6	49479665	+
5CDS-intron	ENST00000422803	ENST00000371197		TCGA	RV	LUSC	TCGA-98-8023-01A	AFTPH	chr2	64796813	+	GLYATL3	chr6	49479665	+
5CDS-intron	ENST00000238856	ENST00000371197		TCGA	RV	LUSC	TCGA-98-8023-01A	AFTPH	chr2	64796813	+	GLYATL3	chr6	49479665	+
5CDS-intron	ENST00000409933	ENST00000371197		TCGA	RV	LUSC	TCGA-98-8023-01A	AFTPH	chr2	64796813	+	GLYATL3	chr6	49479665	+
5CDS-intron	ENST00000409183	ENST00000371197		TCGA	RV	LUSC	TCGA-98-8023-01A	AFTPH	chr2	64796813	+	GLYATL3	chr6	49479665	+
intron-intron	ENST00000487769	ENST00000371197		TCGA	RV	LUSC	TCGA-98-8023-01A	AFTPH	chr2	64796813	+	GLYATL3	chr6	49479665	+
Frame-shit	ENST00000483209	ENST00000354655		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000483209	ENST00000479936		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000483209	ENST00000393081		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000483209	ENST00000433418		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000483209	ENST00000356116		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000483209	ENST00000354273		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000483209	ENST00000369410		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
Frame-shit	ENST00000467604	ENST00000354655		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000467604	ENST00000479936		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000467604	ENST00000393081		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000467604	ENST00000433418		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000467604	ENST00000356116		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000467604	ENST00000354273		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000467604	ENST00000369410		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-3CDS	ENST00000471675	ENST00000354655		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-intron	ENST00000471675	ENST00000479936		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-intron	ENST00000471675	ENST00000393081		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-intron	ENST00000471675	ENST00000433418		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-intron	ENST00000471675	ENST00000356116		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-intron	ENST00000471675	ENST00000354273		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
intron-intron	ENST00000471675	ENST00000369410		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
Frame-shit	ENST00000359213	ENST00000354655		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000359213	ENST00000479936		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000359213	ENST00000393081		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000359213	ENST00000433418		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000359213	ENST00000356116		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000359213	ENST00000354273		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000359213	ENST00000369410		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
Frame-shit	ENST00000393765	ENST00000354655		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000393765	ENST00000479936		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000393765	ENST00000393081		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000393765	ENST00000433418		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000393765	ENST00000356116		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000393765	ENST00000354273		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5CDS-intron	ENST00000393765	ENST00000369410		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-3CDS	ENST00000460321	ENST00000354655		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-intron	ENST00000460321	ENST00000479936		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-intron	ENST00000460321	ENST00000393081		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-intron	ENST00000460321	ENST00000433418		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-intron	ENST00000460321	ENST00000356116		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-intron	ENST00000460321	ENST00000354273		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
5UTR-intron	ENST00000460321	ENST00000369410		TCGA	RV	LUSC	TCGA-56-5897-01A	B4GALT4	chr3	118945656	-	ACSL5	chr10	114182083	+
3UTR-3CDS	ENST00000521282	ENST00000425967		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000397091		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000447712		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000341462		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000532791		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000397113		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000356207		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000335922		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000326324		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000397103		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-3CDS	ENST00000521282	ENST00000397108		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
3UTR-intron	ENST00000521282	ENST00000496629		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000425967		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000397091		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000447712		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000341462		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000532791		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000397113		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000356207		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000335922		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000326324		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000397103		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-3CDS	ENST00000432471	ENST00000397108		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
intron-intron	ENST00000432471	ENST00000496629		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000425967		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000397091		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000447712		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000341462		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000532791		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000397113		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000356207		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000335922		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000326324		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000397103		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
In-frame	ENST00000287322	ENST00000397108		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
5CDS-intron	ENST00000287322	ENST00000496629		TCGA	RV	LUSC	TCGA-22-5480-01A	BAG4	chr8	38050313	+	FGFR1	chr8	38283763	-
5UTR-3CDS	ENST00000237654	ENST00000315567		TCGA	RV	LUSC	TCGA-85-8351-01A	CCNI	chr4	77996625	-	MRPL1	chr4	78870951	+
5UTR-intron	ENST00000237654	ENST00000506674		TCGA	RV	LUSC	TCGA-85-8351-01A	CCNI	chr4	77996625	-	MRPL1	chr4	78870951	+
In-frame	ENST00000537948	ENST00000315567		TCGA	RV	LUSC	TCGA-85-8351-01A	CCNI	chr4	77996625	-	MRPL1	chr4	78870951	+
5CDS-intron	ENST00000537948	ENST00000506674		TCGA	RV	LUSC	TCGA-85-8351-01A	CCNI	chr4	77996625	-	MRPL1	chr4	78870951	+
intron-3CDS	ENST00000504697	ENST00000315567		TCGA	RV	LUSC	TCGA-85-8351-01A	CCNI	chr4	77996625	-	MRPL1	chr4	78870951	+
intron-intron	ENST00000504697	ENST00000506674		TCGA	RV	LUSC	TCGA-85-8351-01A	CCNI	chr4	77996625	-	MRPL1	chr4	78870951	+
5CDS-intron	ENST00000264093	ENST00000339566		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000264093	ENST00000409707		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000264093	ENST00000394073		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000264093	ENST00000394070		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000264093	ENST00000536064		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000264093	ENST00000486458		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000348222	ENST00000339566		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000348222	ENST00000409707		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000348222	ENST00000394073		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000348222	ENST00000394070		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000348222	ENST00000536064		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000348222	ENST00000486458		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
3UTR-intron	ENST00000462685	ENST00000339566		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
3UTR-3UTR	ENST00000462685	ENST00000409707		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
3UTR-intron	ENST00000462685	ENST00000394073		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
3UTR-intron	ENST00000462685	ENST00000394070		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
3UTR-intron	ENST00000462685	ENST00000536064		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
3UTR-intron	ENST00000462685	ENST00000486458		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000356837	ENST00000339566		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000356837	ENST00000409707		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000356837	ENST00000394073		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000356837	ENST00000394070		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000356837	ENST00000536064		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000356837	ENST00000486458		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74100479	+
In-frame	ENST00000470487	ENST00000347063		TCGA	RV	LUSC	TCGA-52-7622-01A	GOLIM4	chr3	167812887	-	RNF175	chr4	154636814	-
Frame-shit	ENST00000470487	ENST00000274068		TCGA	RV	LUSC	TCGA-52-7622-01A	GOLIM4	chr3	167812887	-	RNF175	chr4	154636814	-
5CDS-intron	ENST00000470487	ENST00000506505		TCGA	RV	LUSC	TCGA-52-7622-01A	GOLIM4	chr3	167812887	-	RNF175	chr4	154636814	-
In-frame	ENST00000309027	ENST00000347063		TCGA	RV	LUSC	TCGA-52-7622-01A	GOLIM4	chr3	167812887	-	RNF175	chr4	154636814	-
Frame-shit	ENST00000309027	ENST00000274068		TCGA	RV	LUSC	TCGA-52-7622-01A	GOLIM4	chr3	167812887	-	RNF175	chr4	154636814	-
5CDS-intron	ENST00000309027	ENST00000506505		TCGA	RV	LUSC	TCGA-52-7622-01A	GOLIM4	chr3	167812887	-	RNF175	chr4	154636814	-
In-frame	ENST00000282516	ENST00000264664		TCGA	RV	LUSC	TCGA-22-4595-01A	NIPBL	chr5	36962376	+	FGF10	chr5	44310632	-
In-frame	ENST00000448238	ENST00000264664		TCGA	RV	LUSC	TCGA-22-4595-01A	NIPBL	chr5	36962376	+	FGF10	chr5	44310632	-
3UTR-3CDS	ENST00000504430	ENST00000264664		TCGA	RV	LUSC	TCGA-22-4595-01A	NIPBL	chr5	36962376	+	FGF10	chr5	44310632	-
In-frame	ENST00000265465	ENST00000533820		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
In-frame	ENST00000265465	ENST00000533129		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
In-frame	ENST00000265465	ENST00000524773		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
In-frame	ENST00000265465	ENST00000279247		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5CDS-intron	ENST00000265465	ENST00000527469		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5CDS-intron	ENST00000265465	ENST00000527323		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000541089	ENST00000533820		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000541089	ENST00000533129		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000541089	ENST00000524773		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5UTR-3CDS	ENST00000541089	ENST00000279247		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000541089	ENST00000527469		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5UTR-intron	ENST00000541089	ENST00000527323		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000534785	ENST00000533820		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000534785	ENST00000533129		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000534785	ENST00000524773		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
intron-3CDS	ENST00000534785	ENST00000279247		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
intron-intron	ENST00000534785	ENST00000527469		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
intron-intron	ENST00000534785	ENST00000527323		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	POLA2	chr11	65029842	+	CAPN1	chr11	64972154	+
5CDS-intron	ENST00000267163	ENST00000483512		TCGA	RV	LUSC	TCGA-60-2695-01A	RB1	chr13	48881542	+	CNIH3	chr1	224868660	+
5CDS-intron	ENST00000267163	ENST00000272133		TCGA	RV	LUSC	TCGA-60-2695-01A	RB1	chr13	48881542	+	CNIH3	chr1	224868660	+
intron-intron	ENST00000484879	ENST00000483512		TCGA	RV	LUSC	TCGA-60-2695-01A	RB1	chr13	48881542	+	CNIH3	chr1	224868660	+
intron-intron	ENST00000484879	ENST00000272133		TCGA	RV	LUSC	TCGA-60-2695-01A	RB1	chr13	48881542	+	CNIH3	chr1	224868660	+
5CDS-intron	ENST00000368732	ENST00000257261		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368732	ENST00000522056		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368732	ENST00000278840		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368732	ENST00000521849		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368732	ENST00000574708		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368732	ENST00000522639		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368732	ENST00000517839		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000257261		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000522056		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000278840		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000521849		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000574708		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000522639		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000368733	ENST00000517839		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000257261		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000522056		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000278840		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000521849		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000574708		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000522639		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
intron-intron	ENST00000477801	ENST00000517839		TCGA	RV	LUSC	TCGA-77-7337-01A	S100A8	chr1	153362508	-	FADS2	chr11	61588853	+
Frame-shit	ENST00000318445	ENST00000374580		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
Frame-shit	ENST00000318445	ENST00000374574		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
5CDS-intron	ENST00000318445	ENST00000479069		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
Frame-shit	ENST00000424469	ENST00000374580		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
Frame-shit	ENST00000424469	ENST00000374574		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
5CDS-intron	ENST00000424469	ENST00000479069		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
intron-3CDS	ENST00000555549	ENST00000374580		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
intron-3CDS	ENST00000555549	ENST00000374574		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
intron-intron	ENST00000555549	ENST00000479069		TCGA	RV	LUSC	TCGA-22-5485-01A	SLCO3A1	chr15	92397318	+	BMPR2	chr2	203407034	+
Frame-shit	ENST00000261427	ENST00000340169		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000261427	ENST00000261434		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000261427	ENST00000513731		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000261427	ENST00000381846		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
5CDS-intron	ENST00000261427	ENST00000515061		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000295963	ENST00000340169		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000295963	ENST00000261434		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000295963	ENST00000513731		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000295963	ENST00000381846		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
5CDS-intron	ENST00000295963	ENST00000515061		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
3UTR-3CDS	ENST00000438068	ENST00000340169		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
3UTR-3CDS	ENST00000438068	ENST00000261434		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
3UTR-3CDS	ENST00000438068	ENST00000513731		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
3UTR-3CDS	ENST00000438068	ENST00000381846		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
3UTR-intron	ENST00000438068	ENST00000515061		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
intron-3CDS	ENST00000503368	ENST00000340169		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
intron-3CDS	ENST00000503368	ENST00000261434		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
intron-3CDS	ENST00000503368	ENST00000513731		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
intron-3CDS	ENST00000503368	ENST00000381846		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
intron-intron	ENST00000503368	ENST00000515061		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000445950	ENST00000340169		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000445950	ENST00000261434		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000445950	ENST00000513731		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
Frame-shit	ENST00000445950	ENST00000381846		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
5CDS-intron	ENST00000445950	ENST00000515061		TCGA	RV	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739133	+	LIAS	chr4	39471639	+
In-frame	ENST00000260641	ENST00000393483		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000260641	ENST00000410001		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000260641	ENST00000355053		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000260641	ENST00000539964		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000260641	ENST00000542655		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5CDS-5UTR	ENST00000260641	ENST00000478090		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
3UTR-3CDS	ENST00000476840	ENST00000393483		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
3UTR-3CDS	ENST00000476840	ENST00000410001		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
3UTR-3CDS	ENST00000476840	ENST00000355053		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
3UTR-3CDS	ENST00000476840	ENST00000539964		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
3UTR-3CDS	ENST00000476840	ENST00000542655		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
3UTR-5UTR	ENST00000476840	ENST00000478090		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5UTR-3CDS	ENST00000542850	ENST00000393483		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5UTR-3CDS	ENST00000542850	ENST00000410001		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5UTR-3CDS	ENST00000542850	ENST00000355053		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5UTR-3CDS	ENST00000542850	ENST00000539964		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5UTR-3CDS	ENST00000542850	ENST00000542655		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5UTR-5UTR	ENST00000542850	ENST00000478090		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000377982	ENST00000393483		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000377982	ENST00000410001		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000377982	ENST00000355053		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000377982	ENST00000539964		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000377982	ENST00000542655		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
5CDS-5UTR	ENST00000377982	ENST00000478090		TCGA	RV	LUSC	TCGA-22-5492-01A	ACTR2	chr2	65455091	+	TSGA10	chr2	99722160	-
In-frame	ENST00000356239	ENST00000380050		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
In-frame	ENST00000356239	ENST00000265741		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
In-frame	ENST00000356239	ENST00000406263		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
In-frame	ENST00000356239	ENST00000436577		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
5CDS-intron	ENST00000356239	ENST00000496279		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000358100	ENST00000380050		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000358100	ENST00000265741		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000358100	ENST00000406263		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000358100	ENST00000436577		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-intron	ENST00000358100	ENST00000496279		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000359028	ENST00000380050		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000359028	ENST00000265741		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000359028	ENST00000406263		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000359028	ENST00000436577		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-intron	ENST00000359028	ENST00000496279		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000394564	ENST00000380050		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000394564	ENST00000265741		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000394564	ENST00000406263		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000394564	ENST00000436577		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-intron	ENST00000394564	ENST00000496279		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000491695	ENST00000380050		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000491695	ENST00000265741		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000491695	ENST00000406263		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-3CDS	ENST00000491695	ENST00000436577		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
intron-intron	ENST00000491695	ENST00000496279		TCGA	RV	LUSC	TCGA-43-7658-01A	AKAP9	chr7	91714017	+	CDK14	chr7	90708747	+
In-frame	ENST00000355303	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000355303	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000355303	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000355303	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000355303	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000355303	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000398543	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000398543	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000398543	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000398543	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000398543	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000398543	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000538023	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000538023	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000538023	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000538023	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000538023	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000538023	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
intron-3CDS	ENST00000316296	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
intron-3CDS	ENST00000316296	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
intron-intron	ENST00000316296	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
intron-intron	ENST00000316296	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
intron-intron	ENST00000316296	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
intron-intron	ENST00000316296	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000530676	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000530676	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000530676	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000530676	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000530676	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000530676	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000531349	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
In-frame	ENST00000531349	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000531349	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000531349	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000531349	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
5CDS-intron	ENST00000531349	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
3UTR-3CDS	ENST00000525494	ENST00000316902		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
3UTR-3CDS	ENST00000525494	ENST00000469263		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
3UTR-intron	ENST00000525494	ENST00000453702		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
3UTR-intron	ENST00000525494	ENST00000529705		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
3UTR-intron	ENST00000525494	ENST00000422941		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
3UTR-intron	ENST00000525494	ENST00000532568		TCGA	RV	LUSC	TCGA-68-A59J-01A	ANO1	chr11	70017145	+	SLC7A8	chr14	23635749	-
Frame-shit	ENST00000406875	ENST00000444921		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000406875	ENST00000339582		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000406875	ENST00000358373		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
In-frame	ENST00000406875	ENST00000405249		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
5CDS-5UTR	ENST00000406875	ENST00000480995		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000428878	ENST00000444921		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000428878	ENST00000339582		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000428878	ENST00000358373		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
In-frame	ENST00000428878	ENST00000405249		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
5CDS-5UTR	ENST00000428878	ENST00000480995		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000342645	ENST00000444921		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000342645	ENST00000339582		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000342645	ENST00000358373		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
Frame-shit	ENST00000342645	ENST00000405249		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
5CDS-5UTR	ENST00000342645	ENST00000480995		TCGA	RV	LUSC	TCGA-39-5011-01A	HIPK2	chr7	139285163	-	GRM8	chr7	126249552	-
5UTR-3CDS	ENST00000373566	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373566	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373566	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373566	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373563	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373563	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373563	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000373563	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409480	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409480	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409480	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409480	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409547	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409547	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409547	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409547	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409196	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409196	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409196	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409196	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409451	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409451	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409451	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
5UTR-3CDS	ENST00000409451	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000409613		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000264059		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000409708		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000410095		TCGA	RV	LUSC	TCGA-94-8491-01A	GIGYF2	chr2	233562102	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000251879	ENST00000261172		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5690038	+	EPYC	chr12	91372039	-
Frame-shit	ENST00000414202	ENST00000261172		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5690038	+	EPYC	chr12	91372039	-
Frame-shit	ENST00000381532	ENST00000261172		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5690038	+	EPYC	chr12	91372039	-
Frame-shit	ENST00000418622	ENST00000261172		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5690038	+	EPYC	chr12	91372039	-
Frame-shit	ENST00000449720	ENST00000261172		TCGA	RV	LUSC	TCGA-96-7544-01A	KIAA1432	chr9	5690038	+	EPYC	chr12	91372039	-
In-frame	ENST00000454872	ENST00000334444		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
In-frame	ENST00000454872	ENST00000265586		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
5CDS-intron	ENST00000454872	ENST00000492216		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
5CDS-intron	ENST00000454872	ENST00000427120		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
5CDS-intron	ENST00000454872	ENST00000392579		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
5CDS-intron	ENST00000454872	ENST00000382494		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
5CDS-intron	ENST00000454872	ENST00000446941		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-3CDS	ENST00000473253	ENST00000334444		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-3CDS	ENST00000473253	ENST00000265586		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-intron	ENST00000473253	ENST00000492216		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-intron	ENST00000473253	ENST00000427120		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-intron	ENST00000473253	ENST00000392579		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-intron	ENST00000473253	ENST00000382494		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
intron-intron	ENST00000473253	ENST00000446941		TCGA	RV	LUSC	TCGA-33-4538-01A	NAALADL2	chr3	175345174	+	ABCC5	chr3	183643507	-
5UTR-3CDS	ENST00000282516	ENST00000397517		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-3CDS	ENST00000282516	ENST00000539966		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-5UTR	ENST00000282516	ENST00000481288		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-5UTR	ENST00000282516	ENST00000376547		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-3CDS	ENST00000448238	ENST00000397517		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-3CDS	ENST00000448238	ENST00000539966		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-5UTR	ENST00000448238	ENST00000481288		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-5UTR	ENST00000448238	ENST00000376547		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000504430	ENST00000397517		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
intron-3CDS	ENST00000504430	ENST00000539966		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000504430	ENST00000481288		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
intron-5UTR	ENST00000504430	ENST00000376547		TCGA	RV	LUSC	TCGA-63-A5MW-01A	NIPBL	chr5	36877280	+	STK24	chr13	99171727	-
5UTR-5UTR	ENST00000371828	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371828	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371828	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371828	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371828	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-5UTR	ENST00000371802	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371802	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371802	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371802	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371802	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-5UTR	ENST00000371856	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371856	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371856	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371856	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371856	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-5UTR	ENST00000347458	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000347458	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000347458	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000347458	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000347458	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-5UTR	ENST00000340954	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000340954	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000340954	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000340954	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000340954	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-5UTR	ENST00000371792	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371792	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371792	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371792	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000371792	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-5UTR	ENST00000360426	ENST00000260766		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000360426	ENST00000371380		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000360426	ENST00000371385		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000360426	ENST00000371375		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
5UTR-intron	ENST00000360426	ENST00000464214		TCGA	RV	LUSC	TCGA-39-5040-01A	STAU1	chr20	47804653	-	PLCE1	chr10	95790440	+
Frame-shit	ENST00000373824	ENST00000433971		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
Frame-shit	ENST00000373824	ENST00000345063		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000373824	ENST00000488841		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
Frame-shit	ENST00000263974	ENST00000433971		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
Frame-shit	ENST00000263974	ENST00000345063		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000263974	ENST00000488841		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
5UTR-3CDS	ENST00000471683	ENST00000433971		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
5UTR-3CDS	ENST00000471683	ENST00000345063		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
5UTR-intron	ENST00000471683	ENST00000488841		TCGA	RV	LUSC	TCGA-98-A53A-01A	TAF12	chr1	28944465	-	TPRG1	chr3	189028175	+
In-frame	ENST00000337137	ENST00000348697		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000337137	ENST00000402984		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000337137	ENST00000262722		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000337137	ENST00000327858		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000337137	ENST00000442170		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000337137	ENST00000340923		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
5CDS-3UTR	ENST00000337137	ENST00000476366		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000380995	ENST00000348697		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000380995	ENST00000402984		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000380995	ENST00000262722		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000380995	ENST00000327858		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000380995	ENST00000442170		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000380995	ENST00000340923		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
5CDS-3UTR	ENST00000380995	ENST00000476366		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000407381	ENST00000348697		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000407381	ENST00000402984		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000407381	ENST00000262722		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000407381	ENST00000327858		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000407381	ENST00000442170		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000407381	ENST00000340923		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3UTR	ENST00000407381	ENST00000476366		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000355704	ENST00000348697		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000355704	ENST00000402984		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000355704	ENST00000262722		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000355704	ENST00000327858		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000355704	ENST00000442170		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000355704	ENST00000340923		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3UTR	ENST00000355704	ENST00000476366		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000472791	ENST00000348697		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000472791	ENST00000402984		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000472791	ENST00000262722		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000472791	ENST00000327858		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000472791	ENST00000442170		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3CDS	ENST00000472791	ENST00000340923		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
intron-3UTR	ENST00000472791	ENST00000476366		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000406733	ENST00000348697		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000406733	ENST00000402984		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000406733	ENST00000262722		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000406733	ENST00000327858		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000406733	ENST00000442170		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
In-frame	ENST00000406733	ENST00000340923		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
5CDS-3UTR	ENST00000406733	ENST00000476366		TCGA	RV	LUSC	TCGA-85-A50M-01A	TBC1D22A	chr22	47193517	+	FBLN1	chr22	45946372	+
5UTR-3CDS	ENST00000380833	ENST00000379613		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380833	ENST00000379604		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380833	ENST00000319516		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380833	ENST00000379608		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380833	ENST00000482890		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-5UTR	ENST00000380833	ENST00000497266		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380829	ENST00000379613		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380829	ENST00000379604		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380829	ENST00000319516		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380829	ENST00000379608		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000380829	ENST00000482890		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-5UTR	ENST00000380829	ENST00000497266		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000421085	ENST00000379613		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000421085	ENST00000379604		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000421085	ENST00000319516		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000421085	ENST00000379608		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-3CDS	ENST00000421085	ENST00000482890		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
5UTR-5UTR	ENST00000421085	ENST00000497266		TCGA	RV	LUSC	TCGA-56-8307-01A	CLCN4	chrX	10126591	+	TFAP2A	chr6	10398938	-
intron-intron	ENST00000373017	ENST00000371754		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000373017	ENST00000469991		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000373017	ENST00000371752		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000373017	ENST00000396105		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000470902	ENST00000371754		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000470902	ENST00000469991		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000470902	ENST00000371752		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000470902	ENST00000396105		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000540948	ENST00000371754		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000540948	ENST00000469991		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000540948	ENST00000371752		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000540948	ENST00000396105		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000277480	ENST00000371754		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000277480	ENST00000469991		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000277480	ENST00000371752		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000277480	ENST00000396105		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373013	ENST00000371754		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000373013	ENST00000469991		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373013	ENST00000371752		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000373013	ENST00000396105		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000372998	ENST00000371754		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000372998	ENST00000469991		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000372998	ENST00000371752		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000372998	ENST00000396105		TCGA	RV	LUSC	TCGA-92-8065-01A	LCN2	chr9	130915734	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000261267	ENST00000421745		TCGA	RV	LUSC	TCGA-90-A4EE-01A	LYZ	chr12	69748014	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000549690	ENST00000421745		TCGA	RV	LUSC	TCGA-90-A4EE-01A	LYZ	chr12	69748014	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000548839	ENST00000421745		TCGA	RV	LUSC	TCGA-90-A4EE-01A	LYZ	chr12	69748014	+	BIRC6	chr2	32820101	+
5CDS-5UTR	ENST00000440884	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000440884	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000440884	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000440884	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000416682	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000416682	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000416682	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000416682	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000429436	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000429436	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000429436	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000429436	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000303622	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000303622	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000303622	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000303622	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000216288	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000216288	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000216288	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000216288	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000553942	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000553942	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000553942	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000553942	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000335102	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000335102	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000335102	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000335102	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
3UTR-5UTR	ENST00000561071	ENST00000216554		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
3UTR-5UTR	ENST00000561071	ENST00000558506		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
3UTR-3UTR	ENST00000561071	ENST00000560200		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
3UTR-5UTR	ENST00000561071	ENST00000392715		TCGA	RV	LUSC	TCGA-85-A53L-01A	MARK3	chr14	103871604	+	EIF5	chr14	103801990	+
5CDS-intron	ENST00000258526	ENST00000552983		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000258526	ENST00000332896		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000258526	ENST00000552033		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000258526	ENST00000548483		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000258526	ENST00000542893		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000258526	ENST00000541813		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-3UTR	ENST00000258526	ENST00000548330		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000547057	ENST00000552983		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000547057	ENST00000332896		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000547057	ENST00000552033		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000547057	ENST00000548483		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000547057	ENST00000542893		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-intron	ENST00000547057	ENST00000541813		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5CDS-3UTR	ENST00000547057	ENST00000548330		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551495	ENST00000552983		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551495	ENST00000332896		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551495	ENST00000552033		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551495	ENST00000548483		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551495	ENST00000542893		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551495	ENST00000541813		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
intron-3UTR	ENST00000551495	ENST00000548330		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000545312	ENST00000552983		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000545312	ENST00000332896		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000545312	ENST00000552033		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000545312	ENST00000548483		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000545312	ENST00000542893		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000545312	ENST00000541813		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
5UTR-3UTR	ENST00000545312	ENST00000548330		TCGA	RV	LUSC	TCGA-L3-A524-01A	PLXNC1	chr12	94659001	+	CRADD	chr12	94243746	+
In-frame	ENST00000251810	ENST00000327835		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
5CDS-intron	ENST00000251810	ENST00000520336		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
In-frame	ENST00000395912	ENST00000327835		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
5CDS-intron	ENST00000395912	ENST00000520336		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000519317	ENST00000327835		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000519317	ENST00000520336		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000519962	ENST00000327835		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000519962	ENST00000520336		TCGA	RV	LUSC	TCGA-77-8009-01A	RRM2B	chr8	103231042	-	ZNF704	chr8	81555364	-
Frame-shit	ENST00000601488	ENST00000078445		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000601488	ENST00000252587		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000601488	ENST00000595923		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000601488	ENST00000602257		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000601488	ENST00000602147		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000305232	ENST00000078445		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000305232	ENST00000252587		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000305232	ENST00000595923		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000305232	ENST00000602257		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000305232	ENST00000602147		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000337491	ENST00000078445		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000337491	ENST00000252587		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000337491	ENST00000595923		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000337491	ENST00000602257		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
Frame-shit	ENST00000337491	ENST00000602147		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
intron-3CDS	ENST00000381935	ENST00000078445		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
intron-3CDS	ENST00000381935	ENST00000252587		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
intron-3CDS	ENST00000381935	ENST00000595923		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
intron-3CDS	ENST00000381935	ENST00000602257		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
intron-3CDS	ENST00000381935	ENST00000602147		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
5UTR-3CDS	ENST00000594279	ENST00000078445		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
5UTR-3CDS	ENST00000594279	ENST00000252587		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
5UTR-3CDS	ENST00000594279	ENST00000595923		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
5UTR-3CDS	ENST00000594279	ENST00000602257		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
5UTR-3CDS	ENST00000594279	ENST00000602147		TCGA	RV	LUSC	TCGA-85-8277-01A	SIRT6	chr19	4180779	-	CREB3L3	chr19	4156995	+
intron-3CDS	ENST00000429429	ENST00000302787		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
intron-intron	ENST00000429429	ENST00000512189		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
In-frame	ENST00000489418	ENST00000302787		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
5CDS-intron	ENST00000489418	ENST00000512189		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
In-frame	ENST00000318386	ENST00000302787		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
5CDS-intron	ENST00000318386	ENST00000512189		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
In-frame	ENST00000488267	ENST00000302787		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
5CDS-intron	ENST00000488267	ENST00000512189		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	SLBP	chr4	1713601	-	LETM1	chr4	1817529	-
In-frame	ENST00000398519	ENST00000262288		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
5CDS-intron	ENST00000398519	ENST00000571898		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
In-frame	ENST00000314028	ENST00000262288		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
5CDS-intron	ENST00000314028	ENST00000571898		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
In-frame	ENST00000392334	ENST00000262288		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
5CDS-intron	ENST00000392334	ENST00000571898		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
intron-3CDS	ENST00000578904	ENST00000262288		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
intron-intron	ENST00000578904	ENST00000571898		TCGA	RV	LUSC	TCGA-66-2783-01A	CSNK1D	chr17	80231182	-	SCPEP1	chr17	55072868	+
In-frame	ENST00000246069	ENST00000367534		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5CDS-5UTR	ENST00000246069	ENST00000462965		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5CDS-5UTR	ENST00000246069	ENST00000359856		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5CDS-5UTR	ENST00000246069	ENST00000294742		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5UTR-3CDS	ENST00000474024	ENST00000367534		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5UTR-5UTR	ENST00000474024	ENST00000462965		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5UTR-5UTR	ENST00000474024	ENST00000359856		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5UTR-5UTR	ENST00000474024	ENST00000294742		TCGA	RV	LUSC	TCGA-52-7812-01A	DSTN	chr20	17550856	+	ARPC5	chr1	183599772	-
5CDS-5UTR	ENST00000403627	ENST00000335793		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000403627	ENST00000439510		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000403627	ENST00000581014		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000403627	ENST00000582303		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000335793		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000439510		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000581014		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000405159	ENST00000582303		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000583178	ENST00000335793		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000583178	ENST00000439510		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000583178	ENST00000581014		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000583178	ENST00000582303		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000580032	ENST00000335793		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000580032	ENST00000439510		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-5UTR	ENST00000580032	ENST00000581014		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5UTR-intron	ENST00000580032	ENST00000582303		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000581110	ENST00000335793		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000581110	ENST00000439510		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000581110	ENST00000581014		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000581110	ENST00000582303		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000335793		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000439510		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000581014		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000583024	ENST00000582303		TCGA	RV	LUSC	TCGA-98-A53A-01A	FAM104A	chr17	71223304	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000329138	ENST00000262493		TCGA	RV	LUSC	TCGA-37-3792-01A	HGS	chr17	79654125	+	GNAO1	chr16	56377675	+
5CDS-intron	ENST00000329138	ENST00000262494		TCGA	RV	LUSC	TCGA-37-3792-01A	HGS	chr17	79654125	+	GNAO1	chr16	56377675	+
5CDS-intron	ENST00000329138	ENST00000569295		TCGA	RV	LUSC	TCGA-37-3792-01A	HGS	chr17	79654125	+	GNAO1	chr16	56377675	+
intron-3CDS	ENST00000306888	ENST00000347300		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-3CDS	ENST00000306888	ENST00000296266		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-3CDS	ENST00000306888	ENST00000507564		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000306888	ENST00000431818		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000306888	ENST00000504021		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000306888	ENST00000349441		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000306888	ENST00000348417		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000306888	ENST00000440957		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-intron	ENST00000306888	ENST00000513932		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
Frame-shit	ENST00000263925	ENST00000347300		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
Frame-shit	ENST00000263925	ENST00000296266		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
Frame-shit	ENST00000263925	ENST00000507564		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5CDS-5UTR	ENST00000263925	ENST00000431818		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5CDS-5UTR	ENST00000263925	ENST00000504021		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5CDS-5UTR	ENST00000263925	ENST00000349441		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5CDS-5UTR	ENST00000263925	ENST00000348417		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5CDS-5UTR	ENST00000263925	ENST00000440957		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5CDS-intron	ENST00000263925	ENST00000513932		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-3CDS	ENST00000504605	ENST00000347300		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-3CDS	ENST00000504605	ENST00000296266		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-3CDS	ENST00000504605	ENST00000507564		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000504605	ENST00000431818		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000504605	ENST00000504021		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000504605	ENST00000349441		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000504605	ENST00000348417		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-5UTR	ENST00000504605	ENST00000440957		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
intron-intron	ENST00000504605	ENST00000513932		TCGA	RV	LUSC	TCGA-43-7657-01A	LNX1	chr4	54439790	-	IFT122	chr3	129168714	+
5UTR-5UTR	ENST00000356341	ENST00000383693		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
5UTR-5UTR	ENST00000356341	ENST00000489752		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
intron-5UTR	ENST00000530617	ENST00000383693		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
intron-5UTR	ENST00000530617	ENST00000489752		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
5UTR-5UTR	ENST00000278568	ENST00000383693		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
5UTR-5UTR	ENST00000278568	ENST00000489752		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
intron-5UTR	ENST00000528203	ENST00000383693		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
intron-5UTR	ENST00000528203	ENST00000489752		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
intron-5UTR	ENST00000525542	ENST00000383693		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
intron-5UTR	ENST00000525542	ENST00000489752		TCGA	RV	LUSC	TCGA-56-A4BX-01A	PAK1	chr11	77184597	-	LNP1	chr3	100148541	+
5UTR-3CDS	ENST00000327134	ENST00000324557		TCGA	RV	LUSC	TCGA-66-2756-01A	PAK2	chr3	196467028	+	ECE2	chr3	183975261	+
5UTR-3CDS	ENST00000327134	ENST00000402825		TCGA	RV	LUSC	TCGA-66-2756-01A	PAK2	chr3	196467028	+	ECE2	chr3	183975261	+
5UTR-intron	ENST00000327134	ENST00000359140		TCGA	RV	LUSC	TCGA-66-2756-01A	PAK2	chr3	196467028	+	ECE2	chr3	183975261	+
5UTR-intron	ENST00000327134	ENST00000404464		TCGA	RV	LUSC	TCGA-66-2756-01A	PAK2	chr3	196467028	+	ECE2	chr3	183975261	+
5UTR-intron	ENST00000327134	ENST00000357474		TCGA	RV	LUSC	TCGA-66-2756-01A	PAK2	chr3	196467028	+	ECE2	chr3	183975261	+
5CDS-intron	ENST00000227638	ENST00000530053		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000227638	ENST00000530273		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000227638	ENST00000298050		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000227638	ENST00000527307		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000227638	ENST00000525646		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000436171	ENST00000530053		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000436171	ENST00000530273		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000436171	ENST00000298050		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000436171	ENST00000527307		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
5CDS-intron	ENST00000436171	ENST00000525646		TCGA	RV	LUSC	TCGA-34-5236-01A	PANX1	chr11	93862659	+	CCDC67	chr11	93170709	+
intron-5UTR	ENST00000323523	ENST00000383693		TCGA	RV	LUSC	TCGA-22-1005-01A	TMEM45A	chr3	100238452	+	LNP1	chr3	100148541	+
intron-5UTR	ENST00000323523	ENST00000489752		TCGA	RV	LUSC	TCGA-22-1005-01A	TMEM45A	chr3	100238452	+	LNP1	chr3	100148541	+
5CDS-5UTR	ENST00000403410	ENST00000383693		TCGA	RV	LUSC	TCGA-22-1005-01A	TMEM45A	chr3	100238452	+	LNP1	chr3	100148541	+
5CDS-5UTR	ENST00000403410	ENST00000489752		TCGA	RV	LUSC	TCGA-22-1005-01A	TMEM45A	chr3	100238452	+	LNP1	chr3	100148541	+
3UTR-5UTR	ENST00000462884	ENST00000383693		TCGA	RV	LUSC	TCGA-22-1005-01A	TMEM45A	chr3	100238452	+	LNP1	chr3	100148541	+
3UTR-5UTR	ENST00000462884	ENST00000489752		TCGA	RV	LUSC	TCGA-22-1005-01A	TMEM45A	chr3	100238452	+	LNP1	chr3	100148541	+
Frame-shit	ENST00000336755	ENST00000380055		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
5CDS-5UTR	ENST00000336755	ENST00000482770		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
intron-3CDS	ENST00000534928	ENST00000380055		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
intron-5UTR	ENST00000534928	ENST00000482770		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
3UTR-3CDS	ENST00000461038	ENST00000380055		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
3UTR-5UTR	ENST00000461038	ENST00000482770		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
Frame-shit	ENST00000322831	ENST00000380055		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
5CDS-5UTR	ENST00000322831	ENST00000482770		TCGA	RV	LUSC	TCGA-22-5489-01A	ZCCHC7	chr9	37126939	+	LRRC19	chr9	26995847	-
In-frame	ENST00000303961	ENST00000409419		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
In-frame	ENST00000303961	ENST00000409587		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000303961	ENST00000594085		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000303961	ENST00000409735		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000303961	ENST00000356508		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000303961	ENST00000409281		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
In-frame	ENST00000406058	ENST00000409419		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
In-frame	ENST00000406058	ENST00000409587		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000406058	ENST00000594085		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000406058	ENST00000409735		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000406058	ENST00000356508		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000406058	ENST00000409281		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
In-frame	ENST00000593726	ENST00000409419		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
In-frame	ENST00000593726	ENST00000409587		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000593726	ENST00000594085		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000593726	ENST00000409735		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000593726	ENST00000356508		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
5CDS-intron	ENST00000593726	ENST00000409281		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
intron-3CDS	ENST00000594140	ENST00000409419		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
intron-3CDS	ENST00000594140	ENST00000409587		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
intron-intron	ENST00000594140	ENST00000594085		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
intron-intron	ENST00000594140	ENST00000409735		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
intron-intron	ENST00000594140	ENST00000356508		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
intron-intron	ENST00000594140	ENST00000409281		TCGA	RV	LUSC	TCGA-66-2759-01A	EGLN2	chr19	41307320	+	PLD3	chr19	40877580	+
In-frame	ENST00000418458	ENST00000528157		TCGA	RV	LUSC	TCGA-33-AASB-01A	GNL3	chr3	52720121	+	MANF	chr3	51423639	+
5CDS-3UTR	ENST00000418458	ENST00000470900		TCGA	RV	LUSC	TCGA-33-AASB-01A	GNL3	chr3	52720121	+	MANF	chr3	51423639	+
5UTR-3CDS	ENST00000394799	ENST00000528157		TCGA	RV	LUSC	TCGA-33-AASB-01A	GNL3	chr3	52720121	+	MANF	chr3	51423639	+
5UTR-3UTR	ENST00000394799	ENST00000470900		TCGA	RV	LUSC	TCGA-33-AASB-01A	GNL3	chr3	52720121	+	MANF	chr3	51423639	+
intron-3CDS	ENST00000460073	ENST00000528157		TCGA	RV	LUSC	TCGA-33-AASB-01A	GNL3	chr3	52720121	+	MANF	chr3	51423639	+
intron-3UTR	ENST00000460073	ENST00000470900		TCGA	RV	LUSC	TCGA-33-AASB-01A	GNL3	chr3	52720121	+	MANF	chr3	51423639	+
In-frame	ENST00000309212	ENST00000356200		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
In-frame	ENST00000309212	ENST00000378638		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000309212	ENST00000378633		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000309212	ENST00000357760		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000309212	ENST00000404249		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000309212	ENST00000358779		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-intron	ENST00000309212	ENST00000495016		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000309212	ENST00000378635		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
In-frame	ENST00000342753	ENST00000356200		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
In-frame	ENST00000342753	ENST00000378638		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000342753	ENST00000378633		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000342753	ENST00000357760		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000342753	ENST00000404249		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000342753	ENST00000358779		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-intron	ENST00000342753	ENST00000495016		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000342753	ENST00000378635		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
In-frame	ENST00000445648	ENST00000356200		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
In-frame	ENST00000445648	ENST00000378638		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000445648	ENST00000378633		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000445648	ENST00000357760		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000445648	ENST00000404249		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000445648	ENST00000358779		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-intron	ENST00000445648	ENST00000495016		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-5UTR	ENST00000445648	ENST00000378635		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-3CDS	ENST00000477278	ENST00000356200		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-3CDS	ENST00000477278	ENST00000378638		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-5UTR	ENST00000477278	ENST00000378633		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-5UTR	ENST00000477278	ENST00000357760		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-5UTR	ENST00000477278	ENST00000404249		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-5UTR	ENST00000477278	ENST00000358779		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-intron	ENST00000477278	ENST00000495016		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
intron-5UTR	ENST00000477278	ENST00000378635		TCGA	RV	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11A	chr1	1654270	-
5CDS-3UTR	ENST00000368416	ENST00000525951		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000368416	ENST00000537076		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000368416	ENST00000016913		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000368417	ENST00000525951		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000368417	ENST00000537076		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000368417	ENST00000016913		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
intron-3UTR	ENST00000546092	ENST00000525951		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
intron-5UTR	ENST00000546092	ENST00000537076		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
intron-5UTR	ENST00000546092	ENST00000016913		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-3UTR	ENST00000545433	ENST00000525951		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000545433	ENST00000537076		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000545433	ENST00000016913		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
intron-3UTR	ENST00000476571	ENST00000525951		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
intron-5UTR	ENST00000476571	ENST00000537076		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
intron-5UTR	ENST00000476571	ENST00000016913		TCGA	RV	LUSC	TCGA-33-6737-01A	NKAIN2	chr6	124979532	+	MS4A12	chr11	60264786	+
Frame-shit	ENST00000425528	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
In-frame	ENST00000425528	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
Frame-shit	ENST00000441499	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
In-frame	ENST00000441499	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
Frame-shit	ENST00000356861	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
In-frame	ENST00000356861	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
Frame-shit	ENST00000450764	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
In-frame	ENST00000450764	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
In-frame	ENST00000592287	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
Frame-shit	ENST00000592287	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
Frame-shit	ENST00000588216	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
In-frame	ENST00000588216	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
intron-3CDS	ENST00000589956	ENST00000222219		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
intron-3CDS	ENST00000589956	ENST00000538460		TCGA	RV	LUSC	TCGA-43-5670-01A	TNPO2	chr19	12816054	-	DNASE2	chr19	12987177	-
5CDS-5UTR	ENST00000350026	ENST00000321037		TCGA	RV	LUSC	TCGA-66-2800-01A	ARID1B	chr6	157406039	+	ENPP4	chr6	46107288	+
5CDS-5UTR	ENST00000346085	ENST00000321037		TCGA	RV	LUSC	TCGA-66-2800-01A	ARID1B	chr6	157406039	+	ENPP4	chr6	46107288	+
5CDS-5UTR	ENST00000367148	ENST00000321037		TCGA	RV	LUSC	TCGA-66-2800-01A	ARID1B	chr6	157406039	+	ENPP4	chr6	46107288	+
5CDS-5UTR	ENST00000275248	ENST00000321037		TCGA	RV	LUSC	TCGA-66-2800-01A	ARID1B	chr6	157406039	+	ENPP4	chr6	46107288	+
intron-5UTR	ENST00000478761	ENST00000321037		TCGA	RV	LUSC	TCGA-66-2800-01A	ARID1B	chr6	157406039	+	ENPP4	chr6	46107288	+
5CDS-intron	ENST00000357559	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
5UTR-intron	ENST00000305586	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
5CDS-intron	ENST00000491674	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
5CDS-intron	ENST00000491062	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
5UTR-intron	ENST00000468861	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
5CDS-intron	ENST00000445140	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
intron-intron	ENST00000480918	ENST00000264664		TCGA	RV	LUSC	TCGA-63-A5MV-01A	FXR1	chr3	180630524	+	FGF10	chr5	44389158	-
In-frame	ENST00000354179	ENST00000228136		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-5UTR	ENST00000354179	ENST00000422258		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000354179	ENST00000527893		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000354179	ENST00000525684		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
In-frame	ENST00000439151	ENST00000228136		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-5UTR	ENST00000439151	ENST00000422258		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000439151	ENST00000527893		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000439151	ENST00000525684		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
In-frame	ENST00000347982	ENST00000228136		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-5UTR	ENST00000347982	ENST00000422258		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000347982	ENST00000527893		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000347982	ENST00000525684		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
In-frame	ENST00000361032	ENST00000228136		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-5UTR	ENST00000361032	ENST00000422258		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000361032	ENST00000527893		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
5CDS-3UTR	ENST00000361032	ENST00000525684		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
intron-3CDS	ENST00000511258	ENST00000228136		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
intron-5UTR	ENST00000511258	ENST00000422258		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
intron-3UTR	ENST00000511258	ENST00000527893		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
intron-3UTR	ENST00000511258	ENST00000525684		TCGA	RV	LUSC	TCGA-85-A50M-01A	NSD1	chr5	176666866	+	C11orf58	chr11	16766148	+
Frame-shit	ENST00000331483	ENST00000400105		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000331483	ENST00000317931		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000331483	ENST00000284898		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000331483	ENST00000400104		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000331483	ENST00000535782		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5CDS-intron	ENST00000331483	ENST00000578677		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000576390	ENST00000400105		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000576390	ENST00000317931		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000576390	ENST00000284898		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000576390	ENST00000400104		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000576390	ENST00000535782		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
intron-intron	ENST00000576390	ENST00000578677		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000439918	ENST00000400105		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000439918	ENST00000317931		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000439918	ENST00000284898		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000439918	ENST00000400104		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000439918	ENST00000535782		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5CDS-intron	ENST00000439918	ENST00000578677		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5UTR-3CDS	ENST00000472244	ENST00000400105		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5UTR-3CDS	ENST00000472244	ENST00000317931		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5UTR-3CDS	ENST00000472244	ENST00000284898		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5UTR-3CDS	ENST00000472244	ENST00000400104		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5UTR-3CDS	ENST00000472244	ENST00000535782		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
5UTR-intron	ENST00000472244	ENST00000578677		TCGA	RV	LUSC	TCGA-NC-A5HF-01A	P4HB	chr17	79813018	-	L3MBTL4	chr18	6093527	-
Frame-shit	ENST00000005386	ENST00000437682		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
Frame-shit	ENST00000005386	ENST00000519315		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
Frame-shit	ENST00000005386	ENST00000379907		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
5CDS-3UTR	ENST00000005386	ENST00000524303		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3CDS	ENST00000548211	ENST00000437682		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3CDS	ENST00000548211	ENST00000519315		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3CDS	ENST00000548211	ENST00000379907		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3UTR	ENST00000548211	ENST00000524303		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
Frame-shit	ENST00000432584	ENST00000437682		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
Frame-shit	ENST00000432584	ENST00000519315		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
Frame-shit	ENST00000432584	ENST00000379907		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
5CDS-3UTR	ENST00000432584	ENST00000524303		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3CDS	ENST00000380650	ENST00000437682		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3CDS	ENST00000380650	ENST00000519315		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3CDS	ENST00000380650	ENST00000379907		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
intron-3UTR	ENST00000380650	ENST00000524303		TCGA	RV	LUSC	TCGA-43-6770-01A	RPAP3	chr12	48073276	-	ADAM32	chr8	39141105	+
In-frame	ENST00000373710	ENST00000344147		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000479629		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000373714		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000546109		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000422613		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
In-frame	ENST00000536859	ENST00000344147		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000479629		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000373714		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000546109		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000422613		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
In-frame	ENST00000373709	ENST00000344147		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000479629		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000373714		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000546109		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000422613		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
In-frame	ENST00000536384	ENST00000344147		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000479629		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000373714		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000546109		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000422613		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
3UTR-3CDS	ENST00000491976	ENST00000344147		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000479629		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000373714		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000546109		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000422613		TCGA	RV	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31901915	+	ZCCHC17	chr1	31836879	+
Frame-shit	ENST00000374980	ENST00000379453		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	EIF2S2	chr20	32678323	-	ADRA1D	chr20	4202777	-
Frame-shit	ENST00000420415	ENST00000296046		TCGA	RV	LUSC	TCGA-22-5474-01A	TFRC	chr3	195787051	-	CPA3	chr3	148614307	+
In-frame	ENST00000360110	ENST00000296046		TCGA	RV	LUSC	TCGA-22-5474-01A	TFRC	chr3	195787051	-	CPA3	chr3	148614307	+
3UTR-3CDS	ENST00000540528	ENST00000296046		TCGA	RV	LUSC	TCGA-22-5474-01A	TFRC	chr3	195787051	-	CPA3	chr3	148614307	+
Frame-shit	ENST00000392396	ENST00000296046		TCGA	RV	LUSC	TCGA-22-5474-01A	TFRC	chr3	195787051	-	CPA3	chr3	148614307	+
Frame-shit	ENST00000535031	ENST00000296046		TCGA	RV	LUSC	TCGA-22-5474-01A	TFRC	chr3	195787051	-	CPA3	chr3	148614307	+
5UTR-3CDS	ENST00000465288	ENST00000296046		TCGA	RV	LUSC	TCGA-22-5474-01A	TFRC	chr3	195787051	-	CPA3	chr3	148614307	+
Frame-shit	ENST00000219473	ENST00000566620		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
Frame-shit	ENST00000219473	ENST00000268613		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000565636		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000431540		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000428848		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000567445		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000446376		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000569454		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
Frame-shit	ENST00000570191	ENST00000566620		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
Frame-shit	ENST00000570191	ENST00000268613		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000570191	ENST00000565636		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000570191	ENST00000431540		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000570191	ENST00000428848		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000570191	ENST00000567445		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000570191	ENST00000446376		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000570191	ENST00000569454		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-3CDS	ENST00000562743	ENST00000566620		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-3CDS	ENST00000562743	ENST00000268613		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000565636		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000431540		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000428848		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000567445		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000446376		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000569454		TCGA	RV	LUSC	TCGA-43-A56U-01A	USP10	chr16	84767109	+	CDH13	chr16	83781713	+
In-frame	ENST00000505330	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000505330	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000504381	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000504381	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000507488	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000507488	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000393221	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000393221	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000533801	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000533801	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000510168	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000510168	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000508532	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000508532	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000504948	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000504948	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000513801	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000513801	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000328560	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000328560	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000428331	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000428331	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000359644	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000359644	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
In-frame	ENST00000422190	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000422190	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
intron-3CDS	ENST00000509150	ENST00000453409		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
intron-3CDS	ENST00000509150	ENST00000358511		TCGA	RV	LUSC	TCGA-52-7812-01A	ATP2C1	chr3	130649370	+	COL6A6	chr3	130394046	+
Frame-shit	ENST00000450904	ENST00000064778		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000450904	ENST00000450446		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000450904	ENST00000356467		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000362034	ENST00000064778		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000362034	ENST00000450446		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000362034	ENST00000356467		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000567045	ENST00000064778		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000567045	ENST00000450446		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
Frame-shit	ENST00000567045	ENST00000356467		TCGA	RV	LUSC	TCGA-43-6771-01A	MRPL21	chr11	68660871	-	FAM168A	chr11	73118688	-
5UTR-3CDS	ENST00000514342	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5UTR-3CDS	ENST00000514342	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5UTR-intron	ENST00000514342	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000505697	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000505697	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000505697	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
3UTR-3CDS	ENST00000511363	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
3UTR-3CDS	ENST00000511363	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
3UTR-intron	ENST00000511363	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000503750	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000503750	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000503750	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000281631	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000281631	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000281631	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000514067	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000514067	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000514067	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000505554	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000505554	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000505554	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000513738	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000513738	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000513738	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000503665	ENST00000298248		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000503665	ENST00000382812		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000503665	ENST00000480748		TCGA	RV	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20987526	-
intron-3CDS	ENST00000427662	ENST00000329399		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-intron	ENST00000427662	ENST00000477757		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
In-frame	ENST00000369774	ENST00000329399		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
5CDS-intron	ENST00000369774	ENST00000477757		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
In-frame	ENST00000355946	ENST00000329399		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
5CDS-intron	ENST00000355946	ENST00000477757		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-3CDS	ENST00000315994	ENST00000329399		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-intron	ENST00000315994	ENST00000477757		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-3CDS	ENST00000540321	ENST00000329399		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-intron	ENST00000540321	ENST00000477757		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-3CDS	ENST00000538130	ENST00000329399		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
intron-intron	ENST00000538130	ENST00000477757		TCGA	RV	LUSC	TCGA-96-A4JK-01A	SH3PXD2A	chr10	105561040	-	PDLIM1	chr10	97031541	-
5UTR-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	LUSC	TCGA-56-8082-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	LUSC	TCGA-56-8082-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000430629	ENST00000480033		TCGA	RV	LUSC	TCGA-56-8082-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	LUSC	TCGA-56-8082-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	LUSC	TCGA-56-8082-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
5UTR-5UTR	ENST00000536657	ENST00000480033		TCGA	RV	LUSC	TCGA-56-8082-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27885394	-
In-frame	ENST00000392676	ENST00000397861		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
Frame-shit	ENST00000392676	ENST00000397862		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
In-frame	ENST00000392676	ENST00000575658		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
5CDS-intron	ENST00000392676	ENST00000487705		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
In-frame	ENST00000392677	ENST00000397861		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
Frame-shit	ENST00000392677	ENST00000397862		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
In-frame	ENST00000392677	ENST00000575658		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
5CDS-intron	ENST00000392677	ENST00000487705		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
In-frame	ENST00000588877	ENST00000397861		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
Frame-shit	ENST00000588877	ENST00000397862		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
In-frame	ENST00000588877	ENST00000575658		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
5CDS-intron	ENST00000588877	ENST00000487705		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
intron-3CDS	ENST00000589609	ENST00000397861		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
intron-3CDS	ENST00000589609	ENST00000397862		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
intron-3CDS	ENST00000589609	ENST00000575658		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
intron-intron	ENST00000589609	ENST00000487705		TCGA	RV	LUSC	TCGA-6A-AB49-01A	ABCA5	chr17	67280094	-	C17orf67	chr17	54872541	-
In-frame	ENST00000264414	ENST00000331683		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000264414	ENST00000374309		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000264414	ENST00000432529		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000264414	ENST00000413312		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000264414	ENST00000272898		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000264414	ENST00000447990		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-3UTR	ENST00000264414	ENST00000414961		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
In-frame	ENST00000344951	ENST00000331683		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000344951	ENST00000374309		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000344951	ENST00000432529		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000344951	ENST00000413312		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000344951	ENST00000272898		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000344951	ENST00000447990		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-3UTR	ENST00000344951	ENST00000414961		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
In-frame	ENST00000409096	ENST00000331683		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409096	ENST00000374309		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409096	ENST00000432529		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409096	ENST00000413312		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409096	ENST00000272898		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409096	ENST00000447990		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-3UTR	ENST00000409096	ENST00000414961		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
Frame-shit	ENST00000409777	ENST00000331683		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409777	ENST00000374309		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409777	ENST00000432529		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409777	ENST00000413312		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409777	ENST00000272898		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-intron	ENST00000409777	ENST00000447990		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
5CDS-3UTR	ENST00000409777	ENST00000414961		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-3CDS	ENST00000432260	ENST00000331683		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-intron	ENST00000432260	ENST00000374309		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-intron	ENST00000432260	ENST00000432529		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-intron	ENST00000432260	ENST00000413312		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-intron	ENST00000432260	ENST00000272898		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-intron	ENST00000432260	ENST00000447990		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
intron-3UTR	ENST00000432260	ENST00000414961		TCGA	RV	LUSC	TCGA-O2-A52V-01A	CUL3	chr2	225360549	-	SPAG16	chr2	214174783	+
Frame-shit	ENST00000535741	ENST00000409598		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000535741	ENST00000424281		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000535741	ENST00000304527		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000535741	ENST00000455740		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000535741	ENST00000409252		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000535741	ENST00000514152		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000535741	ENST00000427414		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
5CDS-intron	ENST00000535741	ENST00000604030		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000409598		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000424281		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000304527		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000455740		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000409252		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000514152		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000510413	ENST00000427414		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
5CDS-intron	ENST00000510413	ENST00000604030		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000409598		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000424281		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000304527		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000455740		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000409252		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000514152		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-3CDS	ENST00000503716	ENST00000427414		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
intron-intron	ENST00000503716	ENST00000604030		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000409598		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000424281		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000304527		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000455740		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000409252		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000514152		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000357115	ENST00000427414		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
5CDS-intron	ENST00000357115	ENST00000604030		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000409598		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000424281		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000304527		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000455740		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000409252		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000514152		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
Frame-shit	ENST00000507224	ENST00000427414		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
5CDS-intron	ENST00000507224	ENST00000604030		TCGA	RV	LUSC	TCGA-60-2719-01A	LRBA	chr4	151935579	-	SH3D19	chr4	152060999	-
5UTR-5UTR	ENST00000447404	ENST00000473039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000373624		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000542603		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000394219		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000373620		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000394215		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000447404	ENST00000373618		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000473039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000373624		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000542603		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000394219		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000373620		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000394215		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000348403	ENST00000373618		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000473039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000373624		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000542603		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000394219		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000373620		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000394215		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000360998	ENST00000373618		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000473039		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000373624		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000542603		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000394219		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000373620		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000394215		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-intron	ENST00000530364	ENST00000373618		TCGA	RV	LUSC	TCGA-NC-A5HL-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000394389	ENST00000393829		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000546249		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000537728		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000264649		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000585525		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000343619		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000544137		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
5UTR-intron	ENST00000394389	ENST00000587797		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000393829		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000546249		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000537728		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000264649		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000585525		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000343619		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000544137		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000394386	ENST00000587797		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000393829		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000546249		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000537728		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000264649		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000585525		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000343619		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000544137		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
intron-intron	ENST00000487847	ENST00000587797		TCGA	RV	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850064	+	ATP6V0A1	chr17	40629657	+
In-frame	ENST00000324557	ENST00000318351		TCGA	RV	LUSC	TCGA-56-5898-01A	ECE2	chr3	183967678	+	HTR3C	chr3	183777616	+
In-frame	ENST00000402825	ENST00000318351		TCGA	RV	LUSC	TCGA-56-5898-01A	ECE2	chr3	183967678	+	HTR3C	chr3	183777616	+
intron-3CDS	ENST00000359140	ENST00000318351		TCGA	RV	LUSC	TCGA-56-5898-01A	ECE2	chr3	183967678	+	HTR3C	chr3	183777616	+
intron-3CDS	ENST00000404464	ENST00000318351		TCGA	RV	LUSC	TCGA-56-5898-01A	ECE2	chr3	183967678	+	HTR3C	chr3	183777616	+
intron-3CDS	ENST00000357474	ENST00000318351		TCGA	RV	LUSC	TCGA-56-5898-01A	ECE2	chr3	183967678	+	HTR3C	chr3	183777616	+
In-frame	ENST00000378814	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
In-frame	ENST00000259711	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
In-frame	ENST00000378843	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
In-frame	ENST00000378826	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
In-frame	ENST00000378816	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
In-frame	ENST00000502704	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
intron-3CDS	ENST00000503342	ENST00000264870		TCGA	RV	LUSC	TCGA-37-A5EM-01A	KIF13A	chr6	17987285	-	F13A1	chr6	6197559	-
intron-intron	ENST00000262746	ENST00000484427		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
intron-intron	ENST00000262746	ENST00000371764		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000319248	ENST00000484427		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000319248	ENST00000371764		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372079	ENST00000484427		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000372079	ENST00000371764		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
intron-intron	ENST00000483583	ENST00000484427		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
intron-intron	ENST00000483583	ENST00000371764		TCGA	RV	LUSC	TCGA-94-7557-01A	PRDX1	chr1	45976719	-	DDX27	chr20	47849303	+
5CDS-5UTR	ENST00000382009	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000382009	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000382009	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000382009	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000382009	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000382009	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000382009	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000237364	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000237364	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000237364	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000237364	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000237364	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000237364	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000237364	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467087	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467087	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467087	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467087	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467087	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000467087	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000467087	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000412829	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000412829	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000412829	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000412829	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000412829	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000412829	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000412829	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467011	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467011	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467011	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467011	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000467011	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000467011	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000467011	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000465503	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000465503	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000465503	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000465503	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-5UTR	ENST00000465503	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000465503	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000465503	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-5UTR	ENST00000478425	ENST00000252577		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-5UTR	ENST00000478425	ENST00000360315		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-5UTR	ENST00000478425	ENST00000537887		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-5UTR	ENST00000478425	ENST00000404158		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-5UTR	ENST00000478425	ENST00000358713		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-intron	ENST00000478425	ENST00000429563		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
intron-intron	ENST00000478425	ENST00000473184		TCGA	RV	LUSC	TCGA-22-A5C4-01A	STIM2	chr4	26921256	+	GATAD2A	chr19	19576149	+
5CDS-intron	ENST00000487273	ENST00000319104		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000487273	ENST00000319073		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000487273	ENST00000534961		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000487273	ENST00000527424		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000487273	ENST00000526349		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000466936	ENST00000319104		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000466936	ENST00000319073		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000466936	ENST00000534961		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000466936	ENST00000527424		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000466936	ENST00000526349		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000481513	ENST00000319104		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000481513	ENST00000319073		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000481513	ENST00000534961		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000481513	ENST00000527424		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
5CDS-intron	ENST00000481513	ENST00000526349		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
intron-intron	ENST00000484143	ENST00000319104		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
intron-intron	ENST00000484143	ENST00000319073		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
intron-intron	ENST00000484143	ENST00000534961		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
intron-intron	ENST00000484143	ENST00000527424		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
intron-intron	ENST00000484143	ENST00000526349		TCGA	RV	LUSC	TCGA-21-1076-01A	ADAM9	chr8	38865502	+	RNF170	chr8	42716998	-
intron-3CDS	ENST00000494222	ENST00000368994		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
intron-3CDS	ENST00000494222	ENST00000260723		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
intron-intron	ENST00000494222	ENST00000495370		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000368990	ENST00000368994		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000368990	ENST00000260723		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
5CDS-intron	ENST00000368990	ENST00000495370		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000368988	ENST00000368994		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000368988	ENST00000260723		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
5CDS-intron	ENST00000368988	ENST00000495370		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000368989	ENST00000368994		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000368989	ENST00000260723		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
5CDS-intron	ENST00000368989	ENST00000495370		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000538022	ENST00000368994		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000538022	ENST00000260723		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
5CDS-intron	ENST00000538022	ENST00000495370		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000433307	ENST00000368994		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000433307	ENST00000260723		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
5CDS-intron	ENST00000433307	ENST00000495370		TCGA	RV	LUSC	TCGA-33-AASJ-01A	PLEKHA1	chr10	124159904	+	BTBD16	chr10	124049424	+
In-frame	ENST00000394818	ENST00000533244		TCGA	RV	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908983	+	CCS	chr11	66372810	+
In-frame	ENST00000394818	ENST00000310190		TCGA	RV	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908983	+	CCS	chr11	66372810	+
intron-3CDS	ENST00000278849	ENST00000533244		TCGA	RV	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908983	+	CCS	chr11	66372810	+
intron-3CDS	ENST00000278849	ENST00000310190		TCGA	RV	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908983	+	CCS	chr11	66372810	+
intron-3CDS	ENST00000531099	ENST00000533244		TCGA	RV	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908983	+	CCS	chr11	66372810	+
intron-3CDS	ENST00000531099	ENST00000310190		TCGA	RV	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908983	+	CCS	chr11	66372810	+
Frame-shit	ENST00000343245	ENST00000369303		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
5CDS-intron	ENST00000343245	ENST00000369297		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
intron-3CDS	ENST00000369070	ENST00000369303		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
intron-intron	ENST00000369070	ENST00000369297		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
In-frame	ENST00000369076	ENST00000369303		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
5CDS-intron	ENST00000369076	ENST00000369297		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
intron-3CDS	ENST00000360666	ENST00000369303		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
intron-intron	ENST00000360666	ENST00000369297		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
intron-3CDS	ENST00000475645	ENST00000369303		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
intron-intron	ENST00000475645	ENST00000369297		TCGA	RV	LUSC	TCGA-98-A53B-01A	ATG5	chr6	106756239	-	EPHA7	chr6	93982140	-
In-frame	ENST00000602723	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000602723	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000602723	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000602723	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000602723	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000602723	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000602723	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000602723	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000602723	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000400186	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000400186	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000400186	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000400186	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000400186	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000400186	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000400186	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000400186	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000400186	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000520002	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000520002	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000520002	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000520002	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000520002	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000520002	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000520002	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000520002	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000520002	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000602557	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000602557	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000602557	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000602557	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000602557	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000602557	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000602557	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000602557	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000602557	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000537824	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000537824	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000537824	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000537824	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000537824	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000537824	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000537824	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000537824	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000537824	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000542608	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000542608	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000542608	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000542608	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000542608	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000542608	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000542608	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000542608	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000542608	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000539096	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000539096	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539096	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539096	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000539096	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539096	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000539096	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000539096	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000539096	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000523387	ENST00000566621		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000523387	ENST00000437989		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000523387	ENST00000569302		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000523387	ENST00000567389		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000523387	ENST00000562877		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000523387	ENST00000338183		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000523387	ENST00000565792		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000523387	ENST00000562489		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000523387	ENST00000563167		TCGA	RV	LUSC	TCGA-63-5131-01A	CSMD1	chr8	4851854	-	C15orf41	chr15	37100525	+
In-frame	ENST00000341056	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
In-frame	ENST00000341056	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
In-frame	ENST00000341056	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
5CDS-intron	ENST00000341056	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000396045	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000396045	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000396045	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-intron	ENST00000396045	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
Frame-shit	ENST00000310758	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
Frame-shit	ENST00000310758	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
Frame-shit	ENST00000310758	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
5CDS-intron	ENST00000310758	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000396040	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000396040	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000396040	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-intron	ENST00000396040	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
Frame-shit	ENST00000442504	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
Frame-shit	ENST00000442504	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
Frame-shit	ENST00000442504	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
5CDS-intron	ENST00000442504	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
In-frame	ENST00000448602	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
In-frame	ENST00000448602	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
In-frame	ENST00000448602	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
5CDS-intron	ENST00000448602	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000479447	ENST00000297029		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000479447	ENST00000519209		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-3CDS	ENST00000479447	ENST00000445618		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-intron	ENST00000479447	ENST00000473722		TCGA	RV	LUSC	TCGA-77-6842-01A	ELMO1	chr7	37136224	-	SCIN	chr7	12684209	+
intron-intron	ENST00000461361	ENST00000466084		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000461361	ENST00000296127		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000461361	ENST00000424952		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000461361	ENST00000342790		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
5CDS-intron	ENST00000265564	ENST00000466084		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000265564	ENST00000296127		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000265564	ENST00000424952		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000265564	ENST00000342790		TCGA	RV	LUSC	TCGA-O2-A5IB-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000429644	ENST00000494118		TCGA	RV	LUSC	TCGA-43-2578-01A	GBE1	chr3	81627076	-	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000429644	ENST00000281523		TCGA	RV	LUSC	TCGA-43-2578-01A	GBE1	chr3	81627076	-	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000489715	ENST00000494118		TCGA	RV	LUSC	TCGA-43-2578-01A	GBE1	chr3	81627076	-	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000489715	ENST00000281523		TCGA	RV	LUSC	TCGA-43-2578-01A	GBE1	chr3	81627076	-	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000477426	ENST00000494118		TCGA	RV	LUSC	TCGA-43-2578-01A	GBE1	chr3	81627076	-	ZNF385D	chr3	21478695	-
intron-5UTR	ENST00000477426	ENST00000281523		TCGA	RV	LUSC	TCGA-43-2578-01A	GBE1	chr3	81627076	-	ZNF385D	chr3	21478695	-
In-frame	ENST00000263388	ENST00000343638		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000302904		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000527034		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000533177		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000436088		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000393606		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000529383		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000263388	ENST00000526094		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
5CDS-intron	ENST00000263388	ENST00000537550		TCGA	RV	LUSC	TCGA-98-A53I-01A	NOTCH3	chr19	15270445	-	UBTF	chr17	42288699	-
In-frame	ENST00000409003	ENST00000377869		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
In-frame	ENST00000409003	ENST00000220616		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
5CDS-intron	ENST00000409003	ENST00000542445		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
5CDS-intron	ENST00000409003	ENST00000519543		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
5CDS-intron	ENST00000409003	ENST00000522523		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
In-frame	ENST00000314727	ENST00000377869		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
In-frame	ENST00000314727	ENST00000220616		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
5CDS-intron	ENST00000314727	ENST00000542445		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
5CDS-intron	ENST00000314727	ENST00000519543		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
5CDS-intron	ENST00000314727	ENST00000522523		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
intron-3CDS	ENST00000527515	ENST00000377869		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
intron-3CDS	ENST00000527515	ENST00000220616		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
intron-intron	ENST00000527515	ENST00000542445		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
intron-intron	ENST00000527515	ENST00000519543		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
intron-intron	ENST00000527515	ENST00000522523		TCGA	RV	LUSC	TCGA-21-5783-01A	SAMD12	chr8	119592954	-	TG	chr8	133923622	+
Frame-shit	ENST00000355303	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
Frame-shit	ENST00000398543	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
Frame-shit	ENST00000538023	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
Frame-shit	ENST00000316296	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
Frame-shit	ENST00000530676	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
Frame-shit	ENST00000531349	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
intron-3CDS	ENST00000525494	ENST00000334134		TCGA	RV	LUSC	TCGA-56-8083-01A	ANO1	chr11	69972301	+	FGF3	chr11	69631191	-
5CDS-5UTR	ENST00000179259	ENST00000536668		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000179259	ENST00000544994		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000179259	ENST00000228811		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
5CDS-5UTR	ENST00000179259	ENST00000540107		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537251	ENST00000536668		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537251	ENST00000544994		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537251	ENST00000228811		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
intron-5UTR	ENST00000537251	ENST00000540107		TCGA	RV	LUSC	TCGA-77-A5GB-01B	C12orf5	chr12	4440483	+	PRR4	chr12	11001006	-
3UTR-intron	ENST00000263097	ENST00000409245		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
3UTR-intron	ENST00000263097	ENST00000319190		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
3UTR-intron	ENST00000263097	ENST00000461601		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
3UTR-intron	ENST00000263097	ENST00000394850		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
3UTR-intron	ENST00000263097	ENST00000263737		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
3UTR-intron	ENST00000263097	ENST00000536057		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000606983	ENST00000409245		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000606983	ENST00000319190		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000606983	ENST00000461601		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000606983	ENST00000394850		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000606983	ENST00000263737		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000606983	ENST00000536057		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
5CDS-intron	ENST00000348419	ENST00000409245		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
5CDS-intron	ENST00000348419	ENST00000319190		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
5CDS-intron	ENST00000348419	ENST00000461601		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
5CDS-intron	ENST00000348419	ENST00000394850		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
5CDS-intron	ENST00000348419	ENST00000263737		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
5CDS-intron	ENST00000348419	ENST00000536057		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000565096	ENST00000409245		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000565096	ENST00000319190		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000565096	ENST00000461601		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000565096	ENST00000394850		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000565096	ENST00000263737		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000565096	ENST00000536057		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000562958	ENST00000409245		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000562958	ENST00000319190		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000562958	ENST00000461601		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000562958	ENST00000394850		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000562958	ENST00000263737		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
intron-intron	ENST00000562958	ENST00000536057		TCGA	RV	LUSC	TCGA-77-8143-01A	CNN2	chr19	1039060	+	TTC7A	chr2	47201776	+
Frame-shit	ENST00000262384	ENST00000563392		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000570055		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000563206		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000451014		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000568625		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000288071		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000393657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000262384	ENST00000355992		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-3CDS	ENST00000565423	ENST00000563392		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000570055		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000563206		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000451014		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000568625		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000288071		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000393657		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
intron-intron	ENST00000565423	ENST00000355992		TCGA	RV	LUSC	TCGA-94-A4VJ-01A	N4BP1	chr16	48643686	-	DDX19B	chr16	70358488	+
5CDS-intron	ENST00000356175	ENST00000582674		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000328381		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000443677		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000324689		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000356175	ENST00000535306		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000582674		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000328381		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000443677		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000324689		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000358273	ENST00000535306		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000582674		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000328381		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000443677		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000324689		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000431387	ENST00000535306		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000582674		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000328381		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000443677		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000324689		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000581113	ENST00000535306		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000582674		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000328381		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000443677		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000324689		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000417592	ENST00000535306		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000582674		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000328381		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000443677		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000324689		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
intron-intron	ENST00000444181	ENST00000535306		TCGA	RV	LUSC	TCGA-77-7142-01A	NF1	chr17	29422387	+	RNF135	chr17	29324260	+
5CDS-intron	ENST00000253925	ENST00000449833		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000409161		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000423696		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000338508		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000409530		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000449116		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000357171		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000253925	ENST00000468619		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000449833		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000409161		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000423696		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000338508		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000409530		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000449116		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000357171		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5CDS-intron	ENST00000389547	ENST00000468619		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000449833		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000409161		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000423696		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000338508		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000409530		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000449116		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000357171		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
intron-intron	ENST00000530548	ENST00000468619		TCGA	RV	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185412	+	SHANK2	chr11	70821095	-
5UTR-5UTR	ENST00000464506	ENST00000359680		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
5UTR-5UTR	ENST00000464506	ENST00000453655		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
5UTR-5UTR	ENST00000464506	ENST00000380579		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
5UTR-5UTR	ENST00000464506	ENST00000358231		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
5UTR-5UTR	ENST00000464506	ENST00000458511		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
5UTR-5UTR	ENST00000464506	ENST00000519885		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-5UTR	ENST00000243325	ENST00000359680		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-5UTR	ENST00000243325	ENST00000453655		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-5UTR	ENST00000243325	ENST00000380579		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-5UTR	ENST00000243325	ENST00000358231		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-5UTR	ENST00000243325	ENST00000458511		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-5UTR	ENST00000243325	ENST00000519885		TCGA	RV	LUSC	TCGA-63-A5MY-01A	RAB9A	chrX	13722021	+	TRAPPC2	chrX	13738101	-
intron-3CDS	ENST00000342228	ENST00000315769		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000342228	ENST00000297737		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-intron	ENST00000342228	ENST00000523823		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
5UTR-3CDS	ENST00000520262	ENST00000315769		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
5UTR-3CDS	ENST00000520262	ENST00000297737		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
5UTR-intron	ENST00000520262	ENST00000523823		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000520179	ENST00000315769		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000520179	ENST00000297737		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-intron	ENST00000520179	ENST00000523823		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000523340	ENST00000315769		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-3CDS	ENST00000523340	ENST00000297737		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
intron-intron	ENST00000523340	ENST00000523823		TCGA	RV	LUSC	TCGA-60-2708-01A	SLC20A2	chr8	42358549	-	ZMAT4	chr8	40389757	-
Frame-shit	ENST00000294309	ENST00000533861		TCGA	RV	LUSC	TCGA-77-8009-01A	TPCN2	chr11	68816574	+	TMEM179B	chr11	62556495	+
Frame-shit	ENST00000294309	ENST00000333449		TCGA	RV	LUSC	TCGA-77-8009-01A	TPCN2	chr11	68816574	+	TMEM179B	chr11	62556495	+
Frame-shit	ENST00000542467	ENST00000533861		TCGA	RV	LUSC	TCGA-77-8009-01A	TPCN2	chr11	68816574	+	TMEM179B	chr11	62556495	+
Frame-shit	ENST00000542467	ENST00000333449		TCGA	RV	LUSC	TCGA-77-8009-01A	TPCN2	chr11	68816574	+	TMEM179B	chr11	62556495	+
intron-3CDS	ENST00000442692	ENST00000533861		TCGA	RV	LUSC	TCGA-77-8009-01A	TPCN2	chr11	68816574	+	TMEM179B	chr11	62556495	+
intron-3CDS	ENST00000442692	ENST00000333449		TCGA	RV	LUSC	TCGA-77-8009-01A	TPCN2	chr11	68816574	+	TMEM179B	chr11	62556495	+
5UTR-3UTR	ENST00000430629	ENST00000247087		TCGA	RV	LUSC	TCGA-66-2800-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27861427	-
5UTR-3UTR	ENST00000430629	ENST00000374011		TCGA	RV	LUSC	TCGA-66-2800-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27861427	-
5UTR-intron	ENST00000430629	ENST00000480033		TCGA	RV	LUSC	TCGA-66-2800-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27861427	-
5UTR-3UTR	ENST00000536657	ENST00000247087		TCGA	RV	LUSC	TCGA-66-2800-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27861427	-
5UTR-3UTR	ENST00000536657	ENST00000374011		TCGA	RV	LUSC	TCGA-66-2800-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27861427	-
5UTR-intron	ENST00000536657	ENST00000480033		TCGA	RV	LUSC	TCGA-66-2800-01A	WASF2	chr1	27816497	-	AHDC1	chr1	27861427	-
In-frame	ENST00000273859	ENST00000510861		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
Frame-shit	ENST00000273859	ENST00000514090		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000273859	ENST00000381620		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000273859	ENST00000356504		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
Frame-shit	ENST00000273859	ENST00000540012		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000273859	ENST00000507069		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
5CDS-intron	ENST00000273859	ENST00000515082		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
5CDS-intron	ENST00000273859	ENST00000507460		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
5CDS-intron	ENST00000273859	ENST00000509716		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000504445	ENST00000510861		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
Frame-shit	ENST00000504445	ENST00000514090		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000504445	ENST00000381620		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000504445	ENST00000356504		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
Frame-shit	ENST00000504445	ENST00000540012		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000504445	ENST00000507069		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
5CDS-intron	ENST00000504445	ENST00000515082		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
5CDS-intron	ENST00000504445	ENST00000507460		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
5CDS-intron	ENST00000504445	ENST00000509716		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-3CDS	ENST00000512393	ENST00000510861		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-3CDS	ENST00000512393	ENST00000514090		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-3CDS	ENST00000512393	ENST00000381620		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-3CDS	ENST00000512393	ENST00000356504		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-3CDS	ENST00000512393	ENST00000540012		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-3CDS	ENST00000512393	ENST00000507069		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-intron	ENST00000512393	ENST00000515082		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-intron	ENST00000512393	ENST00000507460		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
intron-intron	ENST00000512393	ENST00000509716		TCGA	RV	LUSC	TCGA-O2-A52V-01A	ATP10D	chr4	47527659	+	GABRA2	chr4	46252621	-
In-frame	ENST00000421182	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000421182	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000357867	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000357867	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000323926	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000323926	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000336916	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000336916	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000354785	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000354785	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000357009	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000357009	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000346544	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000346544	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000345488	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000345488	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000359671	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000359671	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000446046	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000446046	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000443816	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000443816	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000432072	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000432072	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000356005	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
5CDS-5UTR	ENST00000356005	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
intron-3CDS	ENST00000490833	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
intron-5UTR	ENST00000490833	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
intron-3CDS	ENST00000426059	ENST00000265322		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
intron-5UTR	ENST00000426059	ENST00000497889		TCGA	RV	LUSC	TCGA-37-4130-01A	FN1	chr2	216242898	-	PECR	chr2	216931241	-
In-frame	ENST00000462284	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000462284	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000462284	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5CDS-intron	ENST00000462284	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-3CDS	ENST00000356290	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000356290	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000356290	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-intron	ENST00000356290	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-3CDS	ENST00000540827	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000540827	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000540827	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-intron	ENST00000540827	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-3CDS	ENST00000258149	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000258149	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000258149	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-intron	ENST00000258149	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-3CDS	ENST00000428863	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000428863	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000428863	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-intron	ENST00000428863	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-3CDS	ENST00000393412	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000393412	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-5UTR	ENST00000393412	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5UTR-intron	ENST00000393412	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
In-frame	ENST00000258148	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000258148	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000258148	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
5CDS-intron	ENST00000258148	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000544561	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000544561	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000544561	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000544561	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000393410	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000393410	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000393410	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000393410	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000393413	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000393413	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000393413	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000393413	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000517852	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000517852	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000517852	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000517852	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000545204	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000545204	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000545204	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000545204	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000350057	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000350057	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000350057	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000350057	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000360430	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000360430	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000360430	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000360430	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000299252	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000299252	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000299252	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000299252	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000348801	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000348801	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000348801	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000348801	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000478070	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000478070	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000478070	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000478070	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000544125	ENST00000229179		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000544125	ENST00000378905		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000544125	ENST00000539906		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-intron	ENST00000544125	ENST00000401003		TCGA	RV	LUSC	TCGA-NC-A5HE-01A	MDM2	chr12	69202271	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000479481	ENST00000370902		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-intron	ENST00000479481	ENST00000370886		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-intron	ENST00000479481	ENST00000370885		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-intron	ENST00000479481	ENST00000485122		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-5UTR	ENST00000479481	ENST00000471049		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
In-frame	ENST00000370992	ENST00000370902		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000370992	ENST00000370886		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000370992	ENST00000370885		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000370992	ENST00000485122		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-5UTR	ENST00000370992	ENST00000471049		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-3CDS	ENST00000536831	ENST00000370902		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-intron	ENST00000536831	ENST00000370886		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-intron	ENST00000536831	ENST00000370885		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-intron	ENST00000536831	ENST00000485122		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
intron-5UTR	ENST00000536831	ENST00000471049		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
In-frame	ENST00000315563	ENST00000370902		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000315563	ENST00000370886		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000315563	ENST00000370885		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000315563	ENST00000485122		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-5UTR	ENST00000315563	ENST00000471049		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
In-frame	ENST00000414986	ENST00000370902		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000414986	ENST00000370886		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000414986	ENST00000370885		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-intron	ENST00000414986	ENST00000485122		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
5CDS-5UTR	ENST00000414986	ENST00000471049		TCGA	RV	LUSC	TCGA-66-2766-01A	RRP12	chr10	99160062	-	EXOSC1	chr10	99197507	-
Frame-shit	ENST00000265594	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
Frame-shit	ENST00000265594	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000265594	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000265594	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000265594	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000265594	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000265594	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
Frame-shit	ENST00000492597	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
Frame-shit	ENST00000492597	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000492597	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000492597	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000492597	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000492597	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000492597	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
In-frame	ENST00000539926	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
In-frame	ENST00000539926	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000539926	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000539926	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000539926	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000539926	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
5CDS-intron	ENST00000539926	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-3CDS	ENST00000489909	ENST00000357559		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-3CDS	ENST00000489909	ENST00000305586		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-intron	ENST00000489909	ENST00000491674		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-intron	ENST00000489909	ENST00000491062		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-intron	ENST00000489909	ENST00000468861		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-intron	ENST00000489909	ENST00000445140		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-intron	ENST00000489909	ENST00000480918		TCGA	RV	LUSC	TCGA-56-7223-01A	MCCC1	chr3	182788787	-	FXR1	chr3	180679256	+
intron-3CDS	ENST00000431809	ENST00000338675		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-3CDS	ENST00000431809	ENST00000382409		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-5UTR	ENST00000431809	ENST00000525904		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-3CDS	ENST00000397582	ENST00000338675		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-3CDS	ENST00000397582	ENST00000382409		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-5UTR	ENST00000397582	ENST00000525904		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
3UTR-3CDS	ENST00000524468	ENST00000338675		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
3UTR-3CDS	ENST00000524468	ENST00000382409		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
3UTR-5UTR	ENST00000524468	ENST00000525904		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-3CDS	ENST00000344375	ENST00000338675		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-3CDS	ENST00000344375	ENST00000382409		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-5UTR	ENST00000344375	ENST00000525904		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-3CDS	ENST00000397583	ENST00000338675		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-3CDS	ENST00000397583	ENST00000382409		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-5UTR	ENST00000397583	ENST00000525904		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-3CDS	ENST00000454668	ENST00000338675		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-3CDS	ENST00000454668	ENST00000382409		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
intron-5UTR	ENST00000454668	ENST00000525904		TCGA	RV	LUSC	TCGA-85-7843-01A	RASSF7	chr11	561033	+	DEAF1	chr11	654051	-
5UTR-intron	ENST00000446856	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000446856	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000446856	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000446856	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000446856	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000264758	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000398125	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000513328	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000503455	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000355842	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000398123	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000398129	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000545951		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000382839		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000324666		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000502458		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000538860	ENST00000505311		TCGA	RV	LUSC	TCGA-37-4135-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000445930	ENST00000321662		TCGA	RV	LUSC	TCGA-37-A5EL-01A	PSMC6	chr14	53180686	+	GPR137C	chr14	53063635	+
5CDS-intron	ENST00000606149	ENST00000321662		TCGA	RV	LUSC	TCGA-37-A5EL-01A	PSMC6	chr14	53180686	+	GPR137C	chr14	53063635	+
intron-intron	ENST00000557557	ENST00000321662		TCGA	RV	LUSC	TCGA-37-A5EL-01A	PSMC6	chr14	53180686	+	GPR137C	chr14	53063635	+
Frame-shit	ENST00000399799	ENST00000269141		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ROCK1	chr18	18571137	-	CDH2	chr18	25532323	-
Frame-shit	ENST00000399799	ENST00000399380		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	ROCK1	chr18	18571137	-	CDH2	chr18	25532323	-
5CDS-5UTR	ENST00000299608	ENST00000319888		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000299608	ENST00000574538		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
intron-5UTR	ENST00000566887	ENST00000319888		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
intron-5UTR	ENST00000566887	ENST00000574538		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000443099	ENST00000319888		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000443099	ENST00000574538		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000562706	ENST00000319888		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000562706	ENST00000574538		TCGA	RV	LUSC	TCGA-21-1083-01A	TMX3	chr18	66378601	-	METTL4	chr18	2567653	-
Frame-shit	ENST00000343245	ENST00000374791		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000343245	ENST00000539799		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000343245	ENST00000427481		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000343245	ENST00000374786		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000343245	ENST00000425719		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000343245	ENST00000374784		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
5CDS-intron	ENST00000343245	ENST00000474900		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369070	ENST00000374791		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369070	ENST00000539799		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369070	ENST00000427481		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369070	ENST00000374786		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369070	ENST00000425719		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369070	ENST00000374784		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
5CDS-intron	ENST00000369070	ENST00000474900		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369076	ENST00000374791		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369076	ENST00000539799		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369076	ENST00000427481		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369076	ENST00000374786		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369076	ENST00000425719		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000369076	ENST00000374784		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
5CDS-intron	ENST00000369076	ENST00000474900		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000360666	ENST00000374791		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000360666	ENST00000539799		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000360666	ENST00000427481		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000360666	ENST00000374786		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000360666	ENST00000425719		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000360666	ENST00000374784		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
5CDS-intron	ENST00000360666	ENST00000474900		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-3CDS	ENST00000475645	ENST00000374791		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-3CDS	ENST00000475645	ENST00000539799		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-3CDS	ENST00000475645	ENST00000427481		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-3CDS	ENST00000475645	ENST00000374786		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-3CDS	ENST00000475645	ENST00000425719		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-3CDS	ENST00000475645	ENST00000374784		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
intron-intron	ENST00000475645	ENST00000474900		TCGA	RV	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131781458	+
Frame-shit	ENST00000394123	ENST00000544246		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000394123	ENST00000377865		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000394123	ENST00000456367		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000394123	ENST00000328454		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000394123	ENST00000377861		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000543466	ENST00000544246		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000543466	ENST00000377865		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000543466	ENST00000456367		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5UTR-3CDS	ENST00000543466	ENST00000328454		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5UTR-intron	ENST00000543466	ENST00000377861		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000356245	ENST00000544246		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000356245	ENST00000377865		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000356245	ENST00000456367		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
Frame-shit	ENST00000356245	ENST00000328454		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000356245	ENST00000377861		TCGA	RV	LUSC	TCGA-85-A50M-01A	G3BP1	chr5	151166276	+	PCDH9	chr13	66879160	-
5CDS-intron	ENST00000361866	ENST00000233057		TCGA	RV	LUSC	TCGA-85-8666-01A	COL6A1	chr21	47424962	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000361866	ENST00000395127		TCGA	RV	LUSC	TCGA-85-8666-01A	COL6A1	chr21	47424962	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000361866	ENST00000405334		TCGA	RV	LUSC	TCGA-85-8666-01A	COL6A1	chr21	47424962	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000498614	ENST00000233057		TCGA	RV	LUSC	TCGA-85-8666-01A	COL6A1	chr21	47424962	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000498614	ENST00000395127		TCGA	RV	LUSC	TCGA-85-8666-01A	COL6A1	chr21	47424962	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000498614	ENST00000405334		TCGA	RV	LUSC	TCGA-85-8666-01A	COL6A1	chr21	47424962	+	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000205061	ENST00000283882		TCGA	RV	LUSC	TCGA-43-2578-01A	GLG1	chr16	74566019	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000205061	ENST00000564286		TCGA	RV	LUSC	TCGA-43-2578-01A	GLG1	chr16	74566019	-	CFDP1	chr16	75327940	-
Frame-shit	ENST00000422840	ENST00000283882		TCGA	RV	LUSC	TCGA-43-2578-01A	GLG1	chr16	74566019	-	CFDP1	chr16	75327940	-
5CDS-intron	ENST00000422840	ENST00000564286		TCGA	RV	LUSC	TCGA-43-2578-01A	GLG1	chr16	74566019	-	CFDP1	chr16	75327940	-
intron-3CDS	ENST00000447066	ENST00000283882		TCGA	RV	LUSC	TCGA-43-2578-01A	GLG1	chr16	74566019	-	CFDP1	chr16	75327940	-
intron-intron	ENST00000447066	ENST00000564286		TCGA	RV	LUSC	TCGA-43-2578-01A	GLG1	chr16	74566019	-	CFDP1	chr16	75327940	-
In-frame	ENST00000545844	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000545844	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000545844	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000545844	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000545844	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000545844	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000545844	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000567887	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000567887	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000567887	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000567887	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000567887	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000567887	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000567887	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000372915	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000372915	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000372915	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000372915	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000372915	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000372915	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000372915	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000361689	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000361689	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000361689	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000361689	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000361689	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000361689	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000361689	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000539005	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000539005	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000539005	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000539005	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000539005	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000539005	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000539005	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000317713	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000317713	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000317713	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000317713	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000317713	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000317713	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000317713	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000564288	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000564288	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000564288	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000564288	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000564288	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000564288	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000564288	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000289893	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000289893	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
In-frame	ENST00000289893	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000289893	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000289893	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-intron	ENST00000289893	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
5CDS-5UTR	ENST00000289893	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000536367	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000536367	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000536367	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000536367	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000536367	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000536367	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-5UTR	ENST00000536367	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000484793	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000484793	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000484793	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000484793	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000484793	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000484793	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-5UTR	ENST00000484793	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000602421	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000602421	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000602421	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000602421	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000602421	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000602421	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-5UTR	ENST00000602421	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000476350	ENST00000373023		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000476350	ENST00000373026		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000476350	ENST00000373024		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000476350	ENST00000373021		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000476350	ENST00000373027		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-intron	ENST00000476350	ENST00000458109		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-5UTR	ENST00000476350	ENST00000467066		TCGA	RV	LUSC	TCGA-33-4587-01A	MACF1	chr1	39920769	+	INPP5B	chr1	38352676	-
intron-3CDS	ENST00000409068	ENST00000305479		TCGA	RV	LUSC	TCGA-22-A5C4-01A	AAK1	chr2	69732701	-	WFDC13	chr20	44333083	+
In-frame	ENST00000409085	ENST00000305479		TCGA	RV	LUSC	TCGA-22-A5C4-01A	AAK1	chr2	69732701	-	WFDC13	chr20	44333083	+
In-frame	ENST00000406297	ENST00000305479		TCGA	RV	LUSC	TCGA-22-A5C4-01A	AAK1	chr2	69732701	-	WFDC13	chr20	44333083	+
intron-3CDS	ENST00000470281	ENST00000305479		TCGA	RV	LUSC	TCGA-22-A5C4-01A	AAK1	chr2	69732701	-	WFDC13	chr20	44333083	+
intron-3CDS	ENST00000311028	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000311028	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000311028	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000311028	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000395923	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000395923	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000395923	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000395923	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000220931	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000220931	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000220931	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-intron	ENST00000220931	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521599	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521599	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000521599	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000521599	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000522951	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000522951	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000522951	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-intron	ENST00000522951	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000519508	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000519508	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000519508	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000519508	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000521371	ENST00000287437		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000521371	ENST00000522563		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-3CDS	ENST00000521371	ENST00000517315		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
5UTR-intron	ENST00000521371	ENST00000521460		TCGA	RV	LUSC	TCGA-66-2754-01A	NCALD	chr8	102803090	-	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000304987	ENST00000375707		TCGA	RV	LUSC	TCGA-94-7557-01A	SIK2	chr11	111491126	+	CARD17	chr11	104970148	-
intron-3CDS	ENST00000533868	ENST00000375707		TCGA	RV	LUSC	TCGA-94-7557-01A	SIK2	chr11	111491126	+	CARD17	chr11	104970148	-
5CDS-5UTR	ENST00000430629	ENST00000247087		TCGA	RV	LUSC	TCGA-66-2758-01A	WASF2	chr1	27755271	-	AHDC1	chr1	27879696	-
5CDS-5UTR	ENST00000430629	ENST00000374011		TCGA	RV	LUSC	TCGA-66-2758-01A	WASF2	chr1	27755271	-	AHDC1	chr1	27879696	-
5CDS-intron	ENST00000430629	ENST00000480033		TCGA	RV	LUSC	TCGA-66-2758-01A	WASF2	chr1	27755271	-	AHDC1	chr1	27879696	-
5CDS-5UTR	ENST00000536657	ENST00000247087		TCGA	RV	LUSC	TCGA-66-2758-01A	WASF2	chr1	27755271	-	AHDC1	chr1	27879696	-
5CDS-5UTR	ENST00000536657	ENST00000374011		TCGA	RV	LUSC	TCGA-66-2758-01A	WASF2	chr1	27755271	-	AHDC1	chr1	27879696	-
5CDS-intron	ENST00000536657	ENST00000480033		TCGA	RV	LUSC	TCGA-66-2758-01A	WASF2	chr1	27755271	-	AHDC1	chr1	27879696	-
In-frame	ENST00000303635	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000303635	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
In-frame	ENST00000439411	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000439411	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
3UTR-3CDS	ENST00000476163	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
3UTR-5UTR	ENST00000476163	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
In-frame	ENST00000557126	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000557126	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
In-frame	ENST00000473578	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000473578	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
In-frame	ENST00000467404	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000467404	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
intron-3CDS	ENST00000476864	ENST00000376223		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
intron-5UTR	ENST00000476864	ENST00000482265		TCGA	RV	LUSC	TCGA-46-3769-01A	CAMTA1	chr1	6845635	+	DHRS3	chr1	12640694	-
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000369764		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000369764		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000540321	ENST00000224950		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000540321	ENST00000369764		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000538130	ENST00000224950		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000538130	ENST00000369764		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	LUSC	TCGA-18-3415-01A	SH3PXD2A	chr10	105614953	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355235	ENST00000522208		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000355235	ENST00000521389		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000355235	ENST00000261947		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000355235	ENST00000520564		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
Frame-shit	ENST00000356834	ENST00000522208		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000356834	ENST00000521389		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000356834	ENST00000261947		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000356834	ENST00000520564		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-3CDS	ENST00000518085	ENST00000522208		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000518085	ENST00000521389		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000518085	ENST00000261947		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000518085	ENST00000520564		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-3CDS	ENST00000519746	ENST00000522208		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000519746	ENST00000521389		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000519746	ENST00000261947		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000519746	ENST00000520564		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-3CDS	ENST00000444477	ENST00000522208		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000444477	ENST00000521389		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000444477	ENST00000261947		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
intron-intron	ENST00000444477	ENST00000520564		TCGA	RV	LUSC	TCGA-96-A4JK-01A	TBC1D9B	chr5	179331702	-	RNF130	chr5	179347426	-
In-frame	ENST00000341029	ENST00000265631		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000341029	ENST00000416240		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000341029	ENST00000542654		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
5CDS-intron	ENST00000341029	ENST00000494085		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000355810	ENST00000265631		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000355810	ENST00000416240		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000355810	ENST00000542654		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
5CDS-intron	ENST00000355810	ENST00000494085		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000349321	ENST00000265631		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000349321	ENST00000416240		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
In-frame	ENST00000349321	ENST00000542654		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
5CDS-intron	ENST00000349321	ENST00000494085		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
3UTR-3CDS	ENST00000513494	ENST00000265631		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
3UTR-3CDS	ENST00000513494	ENST00000416240		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
3UTR-3CDS	ENST00000513494	ENST00000542654		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
3UTR-intron	ENST00000513494	ENST00000494085		TCGA	RV	LUSC	TCGA-43-7658-01A	ART3	chr4	76997111	+	SLC25A13	chr7	95776008	-
5CDS-3UTR	ENST00000237623	ENST00000355327		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000237623	ENST00000261862		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000237623	ENST00000357769		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000237623	ENST00000567838		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000395080	ENST00000355327		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000395080	ENST00000261862		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-intron	ENST00000395080	ENST00000357769		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-intron	ENST00000395080	ENST00000567838		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000360804	ENST00000355327		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000360804	ENST00000261862		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-intron	ENST00000360804	ENST00000357769		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-intron	ENST00000360804	ENST00000567838		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000509659	ENST00000355327		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000509659	ENST00000261862		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-intron	ENST00000509659	ENST00000357769		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-intron	ENST00000509659	ENST00000567838		TCGA	RV	LUSC	TCGA-92-8063-01A	SPP1	chr4	88904562	+	THSD4	chr15	72072881	+
intron-5UTR	ENST00000584396	ENST00000578681		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
intron-5UTR	ENST00000584396	ENST00000583590		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
intron-intron	ENST00000584396	ENST00000359353		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
intron-5UTR	ENST00000584396	ENST00000389924		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
intron-intron	ENST00000584396	ENST00000457800		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
intron-intron	ENST00000584396	ENST00000582985		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
5CDS-5UTR	ENST00000581208	ENST00000578681		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
5CDS-5UTR	ENST00000581208	ENST00000583590		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
5CDS-intron	ENST00000581208	ENST00000359353		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
5CDS-5UTR	ENST00000581208	ENST00000389924		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
5CDS-intron	ENST00000581208	ENST00000457800		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
5CDS-intron	ENST00000581208	ENST00000582985		TCGA	RV	LUSC	TCGA-66-2783-01A	VEZF1	chr17	56065440	-	DDX42	chr17	61864394	+
Frame-shit	ENST00000393651	ENST00000294304		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
5CDS-intron	ENST00000393651	ENST00000529481		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
intron-3CDS	ENST00000357311	ENST00000294304		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
intron-intron	ENST00000357311	ENST00000529481		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
intron-3CDS	ENST00000489828	ENST00000294304		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
intron-intron	ENST00000489828	ENST00000529481		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
intron-3CDS	ENST00000493638	ENST00000294304		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
intron-intron	ENST00000493638	ENST00000529481		TCGA	RV	LUSC	TCGA-85-8352-01A	SRPK2	chr7	105029095	-	LRP5	chr11	68213904	+
3UTR-3CDS	ENST00000438568	ENST00000369130		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3CDS	ENST00000438568	ENST00000369128		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3UTR	ENST00000438568	ENST00000535106		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3UTR	ENST00000438568	ENST00000484306		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
intron-3CDS	ENST00000369054	ENST00000369130		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
intron-3CDS	ENST00000369054	ENST00000369128		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
intron-3UTR	ENST00000369054	ENST00000535106		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
intron-3UTR	ENST00000369054	ENST00000484306		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
In-frame	ENST00000369064	ENST00000369130		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
Frame-shit	ENST00000369064	ENST00000369128		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
5CDS-3UTR	ENST00000369064	ENST00000535106		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
5CDS-3UTR	ENST00000369064	ENST00000484306		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
In-frame	ENST00000606933	ENST00000369130		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
Frame-shit	ENST00000606933	ENST00000369128		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
5CDS-3UTR	ENST00000606933	ENST00000535106		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
5CDS-3UTR	ENST00000606933	ENST00000484306		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3CDS	ENST00000463555	ENST00000369130		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3CDS	ENST00000463555	ENST00000369128		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3UTR	ENST00000463555	ENST00000535106		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
3UTR-3UTR	ENST00000463555	ENST00000484306		TCGA	RV	LUSC	TCGA-85-6560-01A	TARS2	chr1	150464965	+	VPS45	chr1	150116887	+
intron-3CDS	ENST00000277198	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-5UTR	ENST00000277198	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-5UTR	ENST00000277198	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
Frame-shit	ENST00000297979	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000297979	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000297979	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
Frame-shit	ENST00000375315	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000375315	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000375315	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-3CDS	ENST00000395357	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-5UTR	ENST00000395357	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-5UTR	ENST00000395357	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
Frame-shit	ENST00000425634	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000425634	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000425634	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
Frame-shit	ENST00000433691	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000433691	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-5UTR	ENST00000433691	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-3CDS	ENST00000473778	ENST00000332629		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-5UTR	ENST00000473778	ENST00000429115		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
intron-5UTR	ENST00000473778	ENST00000433160		TCGA	RV	LUSC	TCGA-77-8145-01A	C9orf3	chr9	97767898	+	WDR53	chr3	196281678	-
5CDS-intron	ENST00000249270	ENST00000356767		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000249270	ENST00000393735		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000249270	ENST00000339444		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000249270	ENST00000393730		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000249270	ENST00000306312		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000249270	ENST00000432958		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000249270	ENST00000354356		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000249270	ENST00000393729		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000249270	ENST00000393727		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000249270	ENST00000393723		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000379263	ENST00000356767		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000379263	ENST00000393735		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000379263	ENST00000339444		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000379263	ENST00000393730		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000379263	ENST00000306312		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-intron	ENST00000379263	ENST00000432958		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000379263	ENST00000354356		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000379263	ENST00000393729		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000379263	ENST00000393727		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
5CDS-5UTR	ENST00000379263	ENST00000393723		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-intron	ENST00000412522	ENST00000356767		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-intron	ENST00000412522	ENST00000393735		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-intron	ENST00000412522	ENST00000339444		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-intron	ENST00000412522	ENST00000393730		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-intron	ENST00000412522	ENST00000306312		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-intron	ENST00000412522	ENST00000432958		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-5UTR	ENST00000412522	ENST00000354356		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-5UTR	ENST00000412522	ENST00000393729		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-5UTR	ENST00000412522	ENST00000393727		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
intron-5UTR	ENST00000412522	ENST00000393723		TCGA	RV	LUSC	TCGA-21-1080-01A	DNAJC2	chr7	102978183	-	SLC26A5	chr7	103029561	-
Frame-shit	ENST00000263409	ENST00000589222		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000263409	ENST00000407086		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000263409	ENST00000390652		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000263409	ENST00000408905		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000263409	ENST00000588462		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000263409	ENST00000585744		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000263409	ENST00000588874		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000263409	ENST00000585812		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000589222		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000407086		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000390652		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000408905		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000588462		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000585744		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000453190	ENST00000588874		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000453190	ENST00000585812		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000589222		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000407086		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000390652		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000408905		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000588462		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000585744		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3CDS	ENST00000503088	ENST00000588874		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
5UTR-3UTR	ENST00000503088	ENST00000585812		TCGA	RV	LUSC	TCGA-68-8250-01A	LIFR	chr5	38496484	-	BCAS3	chr17	59445688	+
Frame-shit	ENST00000316218	ENST00000261038		TCGA	RV	LUSC	TCGA-77-7142-01A	PDIA5	chr3	122843190	+	DIRC2	chr3	122598110	+
intron-3CDS	ENST00000467157	ENST00000261038		TCGA	RV	LUSC	TCGA-77-7142-01A	PDIA5	chr3	122843190	+	DIRC2	chr3	122598110	+
In-frame	ENST00000495893	ENST00000415807		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000495893	ENST00000336824		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000495893	ENST00000416957		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000392699		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000421757		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000423424		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000495893	ENST00000476794		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000494943	ENST00000415807		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000494943	ENST00000336824		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000494943	ENST00000416957		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000392699		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000421757		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000423424		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000494943	ENST00000476794		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000467570	ENST00000415807		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
Frame-shit	ENST00000467570	ENST00000336824		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
In-frame	ENST00000467570	ENST00000416957		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000392699		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000421757		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000423424		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5CDS-intron	ENST00000467570	ENST00000476794		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000474275	ENST00000415807		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000474275	ENST00000336824		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000474275	ENST00000416957		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000392699		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000421757		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000423424		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000474275	ENST00000476794		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000497658	ENST00000415807		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000497658	ENST00000336824		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000497658	ENST00000416957		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000392699		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000421757		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000423424		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000497658	ENST00000476794		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000481639	ENST00000415807		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000481639	ENST00000336824		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-3CDS	ENST00000481639	ENST00000416957		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000392699		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000421757		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000423424		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
intron-intron	ENST00000481639	ENST00000476794		TCGA	RV	LUSC	TCGA-56-1622-01A	PHC3	chr3	169863211	-	FNDC3B	chr3	172114954	+
5UTR-3CDS	ENST00000368073	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000368073	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-5UTR	ENST00000368073	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000326837	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000326837	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-5UTR	ENST00000326837	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000368074	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000368074	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-5UTR	ENST00000368074	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
intron-3CDS	ENST00000608310	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
intron-3CDS	ENST00000608310	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
intron-5UTR	ENST00000608310	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
intron-3CDS	ENST00000556710	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
intron-3CDS	ENST00000556710	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
intron-5UTR	ENST00000556710	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000610139	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000610139	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-5UTR	ENST00000610139	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000475733	ENST00000472647		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-3CDS	ENST00000475733	ENST00000367811		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
5UTR-5UTR	ENST00000475733	ENST00000469474		TCGA	RV	LUSC	TCGA-18-3417-01A	DCAF8	chr1	160231075	-	NME7	chr1	169279318	-
Frame-shit	ENST00000305877	ENST00000396324		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
Frame-shit	ENST00000305877	ENST00000452625		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
Frame-shit	ENST00000305877	ENST00000576790		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
Frame-shit	ENST00000305877	ENST00000300036		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
5CDS-intron	ENST00000305877	ENST00000573908		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000359540	ENST00000396324		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000359540	ENST00000452625		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000359540	ENST00000576790		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000359540	ENST00000300036		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-intron	ENST00000359540	ENST00000573908		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000398512	ENST00000396324		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000398512	ENST00000452625		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000398512	ENST00000576790		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000398512	ENST00000300036		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-intron	ENST00000398512	ENST00000573908		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000436990	ENST00000396324		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000436990	ENST00000452625		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000436990	ENST00000576790		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-3CDS	ENST00000436990	ENST00000300036		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
intron-intron	ENST00000436990	ENST00000573908		TCGA	RV	LUSC	TCGA-22-A5C4-01A	BCR	chr22	23637342	+	MYH11	chr16	15880589	-
5UTR-3CDS	ENST00000377263	ENST00000253251		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000377263	ENST00000377157		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000377263	ENST00000343090		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000377263	ENST00000377153		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000377263	ENST00000475795		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000400904	ENST00000253251		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000400904	ENST00000377157		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000400904	ENST00000343090		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000400904	ENST00000377153		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-intron	ENST00000400904	ENST00000475795		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000537447	ENST00000253251		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000537447	ENST00000377157		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000537447	ENST00000343090		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-intron	ENST00000537447	ENST00000377153		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-intron	ENST00000537447	ENST00000475795		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377258	ENST00000253251		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377258	ENST00000377157		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377258	ENST00000343090		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-intron	ENST00000377258	ENST00000377153		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-intron	ENST00000377258	ENST00000475795		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377256	ENST00000253251		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377256	ENST00000377157		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-3CDS	ENST00000377256	ENST00000343090		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-intron	ENST00000377256	ENST00000377153		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
intron-intron	ENST00000377256	ENST00000475795		TCGA	RV	LUSC	TCGA-56-7730-01A	CTNNBIP1	chr1	9970153	-	UBE4B	chr1	10238702	+
5UTR-3CDS	ENST00000396029	ENST00000372409		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
5UTR-intron	ENST00000396029	ENST00000479348		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-3CDS	ENST00000396032	ENST00000372409		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-intron	ENST00000396032	ENST00000479348		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-3CDS	ENST00000371602	ENST00000372409		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-intron	ENST00000371602	ENST00000479348		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-3CDS	ENST00000349014	ENST00000372409		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-intron	ENST00000349014	ENST00000479348		TCGA	RV	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44571736	+
intron-3CDS	ENST00000395290	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
intron-3CDS	ENST00000358597	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
intron-3CDS	ENST00000395292	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
5UTR-3CDS	ENST00000310513	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
intron-3CDS	ENST00000361904	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
intron-3CDS	ENST00000539455	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
5UTR-3CDS	ENST00000531165	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
intron-3CDS	ENST00000532048	ENST00000217402		TCGA	RV	LUSC	TCGA-43-7657-01A	CELF1	chr11	47574544	-	CHMP4B	chr20	32438758	+
5UTR-3CDS	ENST00000342129	ENST00000371457		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000342129	ENST00000277531		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000342129	ENST00000406427		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-5UTR	ENST00000342129	ENST00000492278		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000340951	ENST00000371457		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000340951	ENST00000277531		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000340951	ENST00000406427		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-5UTR	ENST00000340951	ENST00000492278		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000479452	ENST00000371457		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000479452	ENST00000277531		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000479452	ENST00000406427		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-5UTR	ENST00000479452	ENST00000492278		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000475006	ENST00000371457		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000475006	ENST00000277531		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000475006	ENST00000406427		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-5UTR	ENST00000475006	ENST00000492278		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000465160	ENST00000371457		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000465160	ENST00000277531		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-3CDS	ENST00000465160	ENST00000406427		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
5UTR-5UTR	ENST00000465160	ENST00000492278		TCGA	RV	LUSC	TCGA-46-3765-01A	EXD3	chr9	140317566	-	PNPLA7	chr9	140358908	-
In-frame	ENST00000398022	ENST00000398174		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000398022	ENST00000340852		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000398022	ENST00000335574		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000398022	ENST00000376127		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
5CDS-3UTR	ENST00000398022	ENST00000492709		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000217315	ENST00000398174		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000217315	ENST00000340852		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000217315	ENST00000335574		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
In-frame	ENST00000217315	ENST00000376127		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
5CDS-3UTR	ENST00000217315	ENST00000492709		TCGA	RV	LUSC	TCGA-66-2789-01A	TM9SF4	chr20	30747914	+	HM13	chr20	30154013	+
Frame-shit	ENST00000341029	ENST00000264883		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
Frame-shit	ENST00000341029	ENST00000342467		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000341029	ENST00000514987		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000341029	ENST00000458189		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
5CDS-intron	ENST00000341029	ENST00000515460		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
Frame-shit	ENST00000355810	ENST00000264883		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
Frame-shit	ENST00000355810	ENST00000342467		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000355810	ENST00000514987		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000355810	ENST00000458189		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
5CDS-intron	ENST00000355810	ENST00000515460		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
Frame-shit	ENST00000349321	ENST00000264883		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
Frame-shit	ENST00000349321	ENST00000342467		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000349321	ENST00000514987		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000349321	ENST00000458189		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
5CDS-intron	ENST00000349321	ENST00000515460		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
intron-3CDS	ENST00000513494	ENST00000264883		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
intron-3CDS	ENST00000513494	ENST00000342467		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
intron-3CDS	ENST00000513494	ENST00000514987		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
intron-3CDS	ENST00000513494	ENST00000458189		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
intron-intron	ENST00000513494	ENST00000515460		TCGA	RV	LUSC	TCGA-43-3920-01A	ART3	chr4	77025122	+	NUP54	chr4	77036647	-
In-frame	ENST00000321524	ENST00000545604		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000321524	ENST00000540354		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000321524	ENST00000381552		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000321524	ENST00000266509		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000321524	ENST00000535609		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000321524	ENST00000545102		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-3CDS	ENST00000543041	ENST00000545604		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-3CDS	ENST00000543041	ENST00000540354		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-3CDS	ENST00000543041	ENST00000381552		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-3CDS	ENST00000543041	ENST00000266509		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-intron	ENST00000543041	ENST00000535609		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-intron	ENST00000543041	ENST00000545102		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000228843	ENST00000545604		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000228843	ENST00000540354		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000228843	ENST00000381552		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000228843	ENST00000266509		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000228843	ENST00000535609		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000228843	ENST00000545102		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000352618	ENST00000545604		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000352618	ENST00000540354		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000352618	ENST00000381552		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000352618	ENST00000266509		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000352618	ENST00000535609		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000352618	ENST00000545102		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000544927	ENST00000545604		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000544927	ENST00000540354		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000544927	ENST00000381552		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
In-frame	ENST00000544927	ENST00000266509		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000544927	ENST00000535609		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5CDS-intron	ENST00000544927	ENST00000545102		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
intron-3CDS	ENST00000544931	ENST00000545604		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
intron-3CDS	ENST00000544931	ENST00000540354		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
intron-3CDS	ENST00000544931	ENST00000381552		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
intron-3CDS	ENST00000544931	ENST00000266509		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
intron-intron	ENST00000544931	ENST00000535609		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
intron-intron	ENST00000544931	ENST00000545102		TCGA	RV	LUSC	TCGA-37-3792-01A	RAD51AP1	chr12	4653070	+	SLCO1C1	chr12	20890041	+
5UTR-3CDS	ENST00000412504	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000412504	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000072516	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000072516	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000443369	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000443369	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000439062	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000439062	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000447382	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000447382	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000422485	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422485	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000434491	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000434491	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000422940	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000422940	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-3CDS	ENST00000317757	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
5UTR-intron	ENST00000317757	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-3CDS	ENST00000465496	ENST00000264731		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000382063		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000418709		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000320472		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000392460		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000440651		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000354600		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000437221		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000392463		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000392461		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000456148		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
3UTR-intron	ENST00000465496	ENST00000449992		TCGA	RV	LUSC	TCGA-39-5035-01A	IL1RAP	chr3	190232008	+	TP63	chr3	189526061	+
Frame-shit	ENST00000455895	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000455895	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
5CDS-3UTR	ENST00000455895	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000413080	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000413080	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
5CDS-3UTR	ENST00000413080	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3CDS	ENST00000341071	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3CDS	ENST00000341071	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3UTR	ENST00000341071	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000526031	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000526031	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
5CDS-3UTR	ENST00000526031	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000419121	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000419121	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
5CDS-3UTR	ENST00000419121	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000446293	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000446293	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
5CDS-3UTR	ENST00000446293	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3CDS	ENST00000463967	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3CDS	ENST00000463967	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3UTR	ENST00000463967	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3CDS	ENST00000449308	ENST00000373548		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3CDS	ENST00000449308	ENST00000373541		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
intron-3UTR	ENST00000449308	ENST00000490081		TCGA	RV	LUSC	TCGA-60-2721-01A	BSDC1	chr1	32834048	-	HDAC1	chr1	32797075	+
Frame-shit	ENST00000593149	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000593149	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5CDS-intron	ENST00000593149	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000248342	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000248342	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5CDS-intron	ENST00000248342	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
3UTR-3CDS	ENST00000593062	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
3UTR-3CDS	ENST00000593062	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
3UTR-intron	ENST00000593062	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000538434	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000538434	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5CDS-intron	ENST00000538434	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000588934	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000588934	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5CDS-intron	ENST00000588934	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000545173	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000545173	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5CDS-intron	ENST00000545173	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000592558	ENST00000380737		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
Frame-shit	ENST00000592558	ENST00000315985		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5CDS-intron	ENST00000592558	ENST00000523473		TCGA	RV	LUSC	TCGA-77-7338-01A	EIF3K	chr19	39116742	+	PPP2R2A	chr8	26227650	+
5UTR-3CDS	ENST00000242810	ENST00000328913		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-3CDS	ENST00000242810	ENST00000473233		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-3CDS	ENST00000242810	ENST00000447025		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-intron	ENST00000242810	ENST00000414362		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-intron	ENST00000242810	ENST00000468976		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-3CDS	ENST00000454652	ENST00000328913		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-3CDS	ENST00000454652	ENST00000473233		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-3CDS	ENST00000454652	ENST00000447025		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-intron	ENST00000454652	ENST00000414362		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
5UTR-intron	ENST00000454652	ENST00000468976		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-3CDS	ENST00000476808	ENST00000328913		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-3CDS	ENST00000476808	ENST00000473233		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-3CDS	ENST00000476808	ENST00000447025		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-intron	ENST00000476808	ENST00000414362		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-intron	ENST00000476808	ENST00000468976		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-3CDS	ENST00000461813	ENST00000328913		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-3CDS	ENST00000461813	ENST00000473233		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-3CDS	ENST00000461813	ENST00000447025		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-intron	ENST00000461813	ENST00000414362		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
intron-intron	ENST00000461813	ENST00000468976		TCGA	RV	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182948805	-
In-frame	ENST00000340635	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000340635	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000340635	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000360047	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000360047	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000360047	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000507116	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000507116	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000507116	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
Frame-shit	ENST00000502484	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
Frame-shit	ENST00000502484	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000502484	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000546160	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000546160	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000546160	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000502575	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000502575	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000502575	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000358923	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000358923	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
intron-intron	ENST00000358923	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000503258	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000503258	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000503258	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000405755	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000405755	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000405755	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000317118	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000317118	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
intron-intron	ENST00000317118	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5UTR-3CDS	ENST00000503947	ENST00000355849		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5UTR-3CDS	ENST00000503947	ENST00000520981		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
5UTR-intron	ENST00000503947	ENST00000522578		TCGA	RV	LUSC	TCGA-63-A5MY-01A	PDE4D	chr5	58476421	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000331134	ENST00000331483		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5CDS-intron	ENST00000331134	ENST00000576390		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5CDS-intron	ENST00000331134	ENST00000439918		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5CDS-5UTR	ENST00000331134	ENST00000472244		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
In-frame	ENST00000374747	ENST00000331483		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5CDS-intron	ENST00000374747	ENST00000576390		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5CDS-intron	ENST00000374747	ENST00000439918		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5CDS-5UTR	ENST00000374747	ENST00000472244		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000539314	ENST00000331483		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000539314	ENST00000576390		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000539314	ENST00000439918		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000539314	ENST00000472244		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-3CDS	ENST00000572760	ENST00000331483		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-intron	ENST00000572760	ENST00000576390		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-intron	ENST00000572760	ENST00000439918		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-5UTR	ENST00000572760	ENST00000472244		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-3CDS	ENST00000573876	ENST00000331483		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-intron	ENST00000573876	ENST00000576390		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-intron	ENST00000573876	ENST00000439918		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-5UTR	ENST00000573876	ENST00000472244		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-3CDS	ENST00000574344	ENST00000331483		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-intron	ENST00000574344	ENST00000576390		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-intron	ENST00000574344	ENST00000439918		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
intron-5UTR	ENST00000574344	ENST00000472244		TCGA	RV	LUSC	TCGA-21-1076-01A	NPLOC4	chr17	79596751	-	P4HB	chr17	79805223	-
In-frame	ENST00000361570	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
5CDS-intron	ENST00000361570	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
5CDS-intron	ENST00000361570	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000304494	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000304494	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000304494	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
In-frame	ENST00000579755	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
5CDS-intron	ENST00000579755	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
5CDS-intron	ENST00000579755	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000579122	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000579122	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000579122	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000578845	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000578845	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000578845	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
In-frame	ENST00000530628	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
5CDS-intron	ENST00000530628	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
5CDS-intron	ENST00000530628	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000498124	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000498124	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000498124	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000498628	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000498628	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000498628	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000494262	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000494262	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000494262	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000446177	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000446177	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000446177	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000479692	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000479692	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000479692	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000497750	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000497750	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000497750	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-3CDS	ENST00000470819	ENST00000414007		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000470819	ENST00000419187		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
intron-intron	ENST00000470819	ENST00000471256		TCGA	RV	LUSC	TCGA-60-2715-01A	CDKN2A	chr9	21994138	-	SRGAP2	chr1	206634382	+
Frame-shit	ENST00000343815	ENST00000254730		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000343815	ENST00000483457		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000343815	ENST00000483569		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000428931	ENST00000254730		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000428931	ENST00000483457		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000428931	ENST00000483569		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000271877	ENST00000254730		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000271877	ENST00000483457		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000271877	ENST00000483569		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000361546	ENST00000254730		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000361546	ENST00000483457		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000361546	ENST00000483569		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000484819	ENST00000254730		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000484819	ENST00000483457		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
intron-intron	ENST00000484819	ENST00000483569		TCGA	RV	LUSC	TCGA-37-4130-01A	UBAP2L	chr1	154214041	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000313949	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000313949	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371098	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371098	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371075	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371075	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371100	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371100	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371099	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371099	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371102	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371102	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000464624	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000464624	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000306120	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000306120	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371095	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371095	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371085	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000371085	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000354359	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000354359	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000265620	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000265620	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000306090	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000306090	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371081	ENST00000216297		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000371081	ENST00000555943		TCGA	RV	LUSC	TCGA-85-8664-01A	GNAS	chr20	57486241	+	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000262367	ENST00000293851		TCGA	RV	LUSC	TCGA-33-4587-01A	CREBBP	chr16	3929833	-	PRSS33	chr16	2836122	-
Frame-shit	ENST00000262367	ENST00000576886		TCGA	RV	LUSC	TCGA-33-4587-01A	CREBBP	chr16	3929833	-	PRSS33	chr16	2836122	-
Frame-shit	ENST00000262367	ENST00000570702		TCGA	RV	LUSC	TCGA-33-4587-01A	CREBBP	chr16	3929833	-	PRSS33	chr16	2836122	-
Frame-shit	ENST00000382070	ENST00000293851		TCGA	RV	LUSC	TCGA-33-4587-01A	CREBBP	chr16	3929833	-	PRSS33	chr16	2836122	-
Frame-shit	ENST00000382070	ENST00000576886		TCGA	RV	LUSC	TCGA-33-4587-01A	CREBBP	chr16	3929833	-	PRSS33	chr16	2836122	-
Frame-shit	ENST00000382070	ENST00000570702		TCGA	RV	LUSC	TCGA-33-4587-01A	CREBBP	chr16	3929833	-	PRSS33	chr16	2836122	-
In-frame	ENST00000377707	ENST00000358127		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377707	ENST00000523241		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377707	ENST00000520154		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377707	ENST00000377852		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377707	ENST00000377853		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377707	ENST00000522003		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377707	ENST00000520281		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377707	ENST00000414447		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377707	ENST00000523145		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377707	ENST00000446742		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377707	ENST00000377847		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377700	ENST00000358127		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377700	ENST00000523241		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377700	ENST00000520154		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377700	ENST00000377852		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
In-frame	ENST00000377700	ENST00000377853		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377700	ENST00000522003		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377700	ENST00000520281		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377700	ENST00000414447		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377700	ENST00000523145		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377700	ENST00000446742		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5CDS-intron	ENST00000377700	ENST00000377847		TCGA	RV	LUSC	TCGA-22-4609-01A	SHB	chr9	38016008	-	PAX5	chr9	37020798	-
5UTR-3CDS	ENST00000378609	ENST00000307786		TCGA	RV	LUSC	TCGA-34-8454-01A	GNB1	chr1	1822259	-	CALML6	chr1	1847880	+
5UTR-intron	ENST00000378609	ENST00000462293		TCGA	RV	LUSC	TCGA-34-8454-01A	GNB1	chr1	1822259	-	CALML6	chr1	1847880	+
5UTR-3CDS	ENST00000472614	ENST00000307786		TCGA	RV	LUSC	TCGA-34-8454-01A	GNB1	chr1	1822259	-	CALML6	chr1	1847880	+
5UTR-intron	ENST00000472614	ENST00000462293		TCGA	RV	LUSC	TCGA-34-8454-01A	GNB1	chr1	1822259	-	CALML6	chr1	1847880	+
Frame-shit	ENST00000295055	ENST00000324589		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000295055	ENST00000349752		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000295055	ENST00000406653		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000295055	ENST00000356174		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000295055	ENST00000420311		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
5CDS-intron	ENST00000295055	ENST00000486564		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000534090	ENST00000324589		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000534090	ENST00000349752		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000534090	ENST00000406653		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000534090	ENST00000356174		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
Frame-shit	ENST00000534090	ENST00000420311		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
5CDS-intron	ENST00000534090	ENST00000486564		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
In-frame	ENST00000465960	ENST00000324589		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
In-frame	ENST00000465960	ENST00000349752		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
In-frame	ENST00000465960	ENST00000406653		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
In-frame	ENST00000465960	ENST00000356174		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
In-frame	ENST00000465960	ENST00000420311		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
5CDS-intron	ENST00000465960	ENST00000486564		TCGA	RV	LUSC	TCGA-NC-A5HJ-01A	CAPN13	chr2	30980912	-	GALNT14	chr2	31147689	-
5CDS-intron	ENST00000298569	ENST00000510123		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000298569	ENST00000389158		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000298569	ENST00000507413		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000298569	ENST00000509257		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000393728	ENST00000510123		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000393728	ENST00000389158		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000393728	ENST00000507413		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000393728	ENST00000509257		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000393725	ENST00000510123		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000393725	ENST00000389158		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000393725	ENST00000507413		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000393725	ENST00000509257		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000510164	ENST00000510123		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000510164	ENST00000389158		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000510164	ENST00000507413		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
5CDS-intron	ENST00000510164	ENST00000509257		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000533553	ENST00000510123		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000533553	ENST00000389158		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000533553	ENST00000507413		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
intron-intron	ENST00000533553	ENST00000509257		TCGA	RV	LUSC	TCGA-94-8491-01A	KIAA1191	chr5	175777616	-	NOP16	chr5	175811375	-
In-frame	ENST00000212015	ENST00000225171		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
In-frame	ENST00000212015	ENST00000483798		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
In-frame	ENST00000212015	ENST00000339758		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000497639	ENST00000225171		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000497639	ENST00000483798		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000497639	ENST00000339758		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
In-frame	ENST00000432464	ENST00000225171		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
In-frame	ENST00000432464	ENST00000483798		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
In-frame	ENST00000432464	ENST00000339758		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
5UTR-3CDS	ENST00000406900	ENST00000225171		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
5UTR-3CDS	ENST00000406900	ENST00000483798		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
5UTR-3CDS	ENST00000406900	ENST00000339758		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000403579	ENST00000225171		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000403579	ENST00000483798		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
intron-3CDS	ENST00000403579	ENST00000339758		TCGA	RV	LUSC	TCGA-85-A50M-01A	SIRT1	chr10	69651312	+	DNAJC12	chr10	69583150	-
Frame-shit	ENST00000196548	ENST00000348495		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000196548	ENST00000270061		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
5CDS-3UTR	ENST00000196548	ENST00000598159		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
5CDS-intron	ENST00000196548	ENST00000599699		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000608843	ENST00000348495		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
Frame-shit	ENST00000608843	ENST00000270061		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
5CDS-3UTR	ENST00000608843	ENST00000598159		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
5CDS-intron	ENST00000608843	ENST00000599699		TCGA	RV	LUSC	TCGA-22-5478-01A	ZNF8	chr19	58790513	+	SSBP4	chr19	18538161	+
5UTR-intron	ENST00000326505	ENST00000418734		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
5UTR-intron	ENST00000326505	ENST00000397676		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
5UTR-intron	ENST00000326505	ENST00000445626		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
5UTR-intron	ENST00000326505	ENST00000455059		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
5UTR-intron	ENST00000326505	ENST00000463495		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000460419	ENST00000418734		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000460419	ENST00000397676		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000460419	ENST00000445626		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000460419	ENST00000455059		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000460419	ENST00000463495		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000465010	ENST00000418734		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000465010	ENST00000397676		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000465010	ENST00000445626		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000465010	ENST00000455059		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000465010	ENST00000463495		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000462559	ENST00000418734		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000462559	ENST00000397676		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000462559	ENST00000445626		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000462559	ENST00000455059		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
intron-intron	ENST00000462559	ENST00000463495		TCGA	RV	LUSC	TCGA-56-5898-01A	B3GNT5	chr3	182971260	+	ALG3	chr3	183963600	-
In-frame	ENST00000254644	ENST00000466387		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000254644	ENST00000496558		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000254644	ENST00000361291		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000254644	ENST00000402739		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000254644	ENST00000540488		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000254644	ENST00000541047		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000254644	ENST00000343114		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000254644	ENST00000496251		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000254644	ENST00000409266		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000466387		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000496558		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000361291		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000402739		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000540488		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000541047		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000605125	ENST00000343114		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-intron	ENST00000605125	ENST00000496251		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
intron-intron	ENST00000605125	ENST00000409266		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000466387		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000496558		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000361291		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000402739		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000540488		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000541047		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000337109	ENST00000343114		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000337109	ENST00000496251		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000337109	ENST00000409266		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000466387		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000496558		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000361291		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000402739		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000540488		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000541047		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
In-frame	ENST00000409180	ENST00000343114		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000409180	ENST00000496251		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000409180	ENST00000409266		TCGA	RV	LUSC	TCGA-18-3414-01A	MRPL35	chr2	86434450	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000259075	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000259075	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000259075	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000457476	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000457476	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000457476	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000392749	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000392749	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000392749	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000461338	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000461338	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000461338	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000402568	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000402568	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000402568	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000406287	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000406287	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000406287	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000405852	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000405852	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000405852	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000403609	ENST00000555545		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000403609	ENST00000261245		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000403609	ENST00000539616		TCGA	RV	LUSC	TCGA-56-6545-01A	TANK	chr2	162036272	+	MNAT1	chr14	61434947	+
In-frame	ENST00000263773	ENST00000341398		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
In-frame	ENST00000263773	ENST00000264025		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
In-frame	ENST00000263773	ENST00000340882		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
5CDS-5UTR	ENST00000263773	ENST00000524510		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
5UTR-3CDS	ENST00000534003	ENST00000341398		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
5UTR-3CDS	ENST00000534003	ENST00000264025		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
5UTR-3CDS	ENST00000534003	ENST00000340882		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
5UTR-5UTR	ENST00000534003	ENST00000524510		TCGA	RV	LUSC	TCGA-96-7544-01A	FNBP4	chr11	47786822	-	PVRL1	chr11	119548567	-
Frame-shit	ENST00000507668	ENST00000350881		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
Frame-shit	ENST00000507668	ENST00000511733		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
5CDS-intron	ENST00000507668	ENST00000504720		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
In-frame	ENST00000512972	ENST00000350881		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
In-frame	ENST00000512972	ENST00000511733		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
5CDS-intron	ENST00000512972	ENST00000504720		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
Frame-shit	ENST00000509193	ENST00000350881		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
Frame-shit	ENST00000509193	ENST00000511733		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
5CDS-intron	ENST00000509193	ENST00000504720		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
In-frame	ENST00000512721	ENST00000350881		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
In-frame	ENST00000512721	ENST00000511733		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
5CDS-intron	ENST00000512721	ENST00000504720		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
intron-3CDS	ENST00000513907	ENST00000350881		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
intron-3CDS	ENST00000513907	ENST00000511733		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
intron-intron	ENST00000513907	ENST00000504720		TCGA	RV	LUSC	TCGA-77-7142-01A	SERINC5	chr5	79470777	-	THBS4	chr5	79372678	+
Frame-shit	ENST00000225777	ENST00000416426		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000225777	ENST00000284073		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000225777	ENST00000322684		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000225777	ENST00000442934		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000225777	ENST00000579180		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
5CDS-intron	ENST00000225777	ENST00000579505		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000585591	ENST00000416426		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000585591	ENST00000284073		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000585591	ENST00000322684		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000585591	ENST00000442934		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000585591	ENST00000579180		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
5CDS-intron	ENST00000585591	ENST00000579505		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000589711	ENST00000416426		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000589711	ENST00000284073		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000589711	ENST00000322684		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000589711	ENST00000442934		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
intron-3CDS	ENST00000589711	ENST00000579180		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
intron-intron	ENST00000589711	ENST00000579505		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000588282	ENST00000416426		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000588282	ENST00000284073		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000588282	ENST00000322684		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000588282	ENST00000442934		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000588282	ENST00000579180		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
5CDS-intron	ENST00000588282	ENST00000579505		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000590201	ENST00000416426		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000590201	ENST00000284073		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000590201	ENST00000322684		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000590201	ENST00000442934		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
Frame-shit	ENST00000590201	ENST00000579180		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
5CDS-intron	ENST00000590201	ENST00000579505		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
3UTR-3CDS	ENST00000592456	ENST00000416426		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
3UTR-3CDS	ENST00000592456	ENST00000284073		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
3UTR-3CDS	ENST00000592456	ENST00000322684		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
3UTR-3CDS	ENST00000592456	ENST00000442934		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
3UTR-3CDS	ENST00000592456	ENST00000579180		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
3UTR-intron	ENST00000592456	ENST00000579505		TCGA	RV	LUSC	TCGA-66-2783-01A	SYNGR2	chr17	76167135	+	MSI2	chr17	55478740	+
5CDS-5UTR	ENST00000528896	ENST00000541285		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
5CDS-5UTR	ENST00000528896	ENST00000399138		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
5UTR-5UTR	ENST00000544884	ENST00000541285		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
5UTR-5UTR	ENST00000544884	ENST00000399138		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
5UTR-5UTR	ENST00000389003	ENST00000541285		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
5UTR-5UTR	ENST00000389003	ENST00000399138		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
intron-5UTR	ENST00000579924	ENST00000541285		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
intron-5UTR	ENST00000579924	ENST00000399138		TCGA	RV	LUSC	TCGA-60-2722-01A	KIAA0100	chr17	26970628	-	ALKBH5	chr17	18110129	+
In-frame	ENST00000323274	ENST00000584307		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
In-frame	ENST00000323274	ENST00000314574		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
5CDS-intron	ENST00000323274	ENST00000577611		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
5CDS-intron	ENST00000323274	ENST00000577961		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-3CDS	ENST00000323250	ENST00000584307		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-3CDS	ENST00000323250	ENST00000314574		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-intron	ENST00000323250	ENST00000577611		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-intron	ENST00000323250	ENST00000577961		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
In-frame	ENST00000323224	ENST00000584307		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
In-frame	ENST00000323224	ENST00000314574		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
5CDS-intron	ENST00000323224	ENST00000577611		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
5CDS-intron	ENST00000323224	ENST00000577961		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-3CDS	ENST00000581920	ENST00000584307		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-3CDS	ENST00000581920	ENST00000314574		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-intron	ENST00000581920	ENST00000577611		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
intron-intron	ENST00000581920	ENST00000577961		TCGA	RV	LUSC	TCGA-85-8353-01A	TYMS	chr18	662320	+	YES1	chr18	732965	-
5CDS-5UTR	ENST00000583610	ENST00000304046		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000583610	ENST00000579695		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000583610	ENST00000394169		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000583610	ENST00000584220		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000583610	ENST00000582052		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000394294	ENST00000304046		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000394294	ENST00000579695		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000394294	ENST00000394169		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000394294	ENST00000584220		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000394294	ENST00000582052		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000264658	ENST00000304046		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000264658	ENST00000579695		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000264658	ENST00000394169		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000264658	ENST00000584220		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000264658	ENST00000582052		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000577399	ENST00000304046		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000577399	ENST00000579695		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000577399	ENST00000394169		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000577399	ENST00000584220		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
intron-intron	ENST00000577399	ENST00000582052		TCGA	RV	LUSC	TCGA-22-0944-01A	FBXL20	chr17	37557614	-	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000441802	ENST00000393593		TCGA	RV	LUSC	TCGA-63-A5MJ-01A	FAT1	chr4	187530337	-	IRF2	chr4	185350224	-
5CDS-5UTR	ENST00000441802	ENST00000512020		TCGA	RV	LUSC	TCGA-63-A5MJ-01A	FAT1	chr4	187530337	-	IRF2	chr4	185350224	-
intron-5UTR	ENST00000512347	ENST00000393593		TCGA	RV	LUSC	TCGA-63-A5MJ-01A	FAT1	chr4	187530337	-	IRF2	chr4	185350224	-
intron-5UTR	ENST00000512347	ENST00000512020		TCGA	RV	LUSC	TCGA-63-A5MJ-01A	FAT1	chr4	187530337	-	IRF2	chr4	185350224	-
Frame-shit	ENST00000594800	ENST00000324464		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
Frame-shit	ENST00000594800	ENST00000450541		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
Frame-shit	ENST00000594800	ENST00000243583		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
3UTR-3CDS	ENST00000602069	ENST00000324464		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
3UTR-3CDS	ENST00000602069	ENST00000450541		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
3UTR-3CDS	ENST00000602069	ENST00000243583		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
Frame-shit	ENST00000357052	ENST00000324464		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
Frame-shit	ENST00000357052	ENST00000450541		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
Frame-shit	ENST00000357052	ENST00000243583		TCGA	RV	LUSC	TCGA-43-7657-01A	RAB4B	chr19	41284296	+	ADCK4	chr19	41201959	-
5CDS-3UTR	ENST00000405015	ENST00000472729		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405015	ENST00000311832		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000405015	ENST00000538736		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000431489	ENST00000472729		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000431489	ENST00000311832		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000431489	ENST00000538736		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000354487	ENST00000472729		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000354487	ENST00000311832		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000354487	ENST00000538736		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000263991	ENST00000472729		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000263991	ENST00000311832		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000263991	ENST00000538736		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405289	ENST00000472729		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-3UTR	ENST00000405289	ENST00000311832		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
5CDS-intron	ENST00000405289	ENST00000538736		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
intron-3UTR	ENST00000496857	ENST00000472729		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
intron-3UTR	ENST00000496857	ENST00000311832		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
intron-intron	ENST00000496857	ENST00000538736		TCGA	RV	LUSC	TCGA-63-A5MR-01A	EHBP1	chr2	62991496	+	COMMD1	chr2	62362966	+
In-frame	ENST00000264832	ENST00000348943		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
In-frame	ENST00000264832	ENST00000325495		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
5CDS-intron	ENST00000264832	ENST00000602219		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
intron-3CDS	ENST00000423829	ENST00000348943		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
intron-3CDS	ENST00000423829	ENST00000325495		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
intron-intron	ENST00000423829	ENST00000602219		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
intron-3CDS	ENST00000585443	ENST00000348943		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
intron-3CDS	ENST00000585443	ENST00000325495		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
intron-intron	ENST00000585443	ENST00000602219		TCGA	RV	LUSC	TCGA-77-7338-01A	ICAM1	chr19	10385704	+	HNRNPM	chr19	8550487	+
Frame-shit	ENST00000313486	ENST00000304992		TCGA	RV	LUSC	TCGA-43-8116-01A	PITPNA	chr17	1456298	-	PRPF8	chr17	1557310	-
Frame-shit	ENST00000313486	ENST00000572621		TCGA	RV	LUSC	TCGA-43-8116-01A	PITPNA	chr17	1456298	-	PRPF8	chr17	1557310	-
5CDS-intron	ENST00000313486	ENST00000575116		TCGA	RV	LUSC	TCGA-43-8116-01A	PITPNA	chr17	1456298	-	PRPF8	chr17	1557310	-
Frame-shit	ENST00000539476	ENST00000304992		TCGA	RV	LUSC	TCGA-43-8116-01A	PITPNA	chr17	1456298	-	PRPF8	chr17	1557310	-
Frame-shit	ENST00000539476	ENST00000572621		TCGA	RV	LUSC	TCGA-43-8116-01A	PITPNA	chr17	1456298	-	PRPF8	chr17	1557310	-
5CDS-intron	ENST00000539476	ENST00000575116		TCGA	RV	LUSC	TCGA-43-8116-01A	PITPNA	chr17	1456298	-	PRPF8	chr17	1557310	-
5CDS-intron	ENST00000435962	ENST00000448637		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000435962	ENST00000312675		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000435962	ENST00000543006		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000435962	ENST00000471917		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000340892	ENST00000448637		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000340892	ENST00000312675		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000340892	ENST00000543006		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000340892	ENST00000471917		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000360594	ENST00000448637		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000360594	ENST00000312675		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000360594	ENST00000543006		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000360594	ENST00000471917		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000556018	ENST00000448637		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000556018	ENST00000312675		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000556018	ENST00000543006		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
5CDS-intron	ENST00000556018	ENST00000471917		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
intron-intron	ENST00000555302	ENST00000448637		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
intron-intron	ENST00000555302	ENST00000312675		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
intron-intron	ENST00000555302	ENST00000543006		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
intron-intron	ENST00000555302	ENST00000471917		TCGA	RV	LUSC	TCGA-43-5668-01A	TC2N	chr14	92280047	-	LPP	chr3	188583988	+
In-frame	ENST00000326181	ENST00000370888		TCGA	RV	LUSC	TCGA-85-A4QR-01A	TRAF7	chr16	2215937	+	LRRC1	chr6	53743791	+
In-frame	ENST00000326181	ENST00000370882		TCGA	RV	LUSC	TCGA-85-A4QR-01A	TRAF7	chr16	2215937	+	LRRC1	chr6	53743791	+
intron-3CDS	ENST00000355327	ENST00000392882		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000355327	ENST00000358655		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000355327	ENST00000355338		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000355327	ENST00000344102		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000355327	ENST00000557135		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000355327	ENST00000556645		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-intron	ENST00000355327	ENST00000554084		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000261862	ENST00000392882		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000261862	ENST00000358655		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000261862	ENST00000355338		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000261862	ENST00000344102		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000261862	ENST00000557135		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000261862	ENST00000556645		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-intron	ENST00000261862	ENST00000554084		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
In-frame	ENST00000357769	ENST00000392882		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
In-frame	ENST00000357769	ENST00000358655		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
In-frame	ENST00000357769	ENST00000355338		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
In-frame	ENST00000357769	ENST00000344102		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
In-frame	ENST00000357769	ENST00000557135		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
In-frame	ENST00000357769	ENST00000556645		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
5CDS-intron	ENST00000357769	ENST00000554084		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000567838	ENST00000392882		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000567838	ENST00000358655		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000567838	ENST00000355338		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000567838	ENST00000344102		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000567838	ENST00000557135		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-3CDS	ENST00000567838	ENST00000556645		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
intron-intron	ENST00000567838	ENST00000554084		TCGA	RV	LUSC	TCGA-63-A5MP-01A	THSD4	chr15	71839820	+	WARS	chr14	100803539	-
5UTR-5UTR	ENST00000353383	ENST00000579419		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-5UTR	ENST00000353383	ENST00000357896		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-5UTR	ENST00000353383	ENST00000395418		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-5UTR	ENST00000353383	ENST00000585089		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-5UTR	ENST00000353383	ENST00000585313		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-5UTR	ENST00000353383	ENST00000578122		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-5UTR	ENST00000353383	ENST00000578985		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000579419		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000357896		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000395418		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000585089		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000585313		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000578122		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000489697	ENST00000578985		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000579419		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000357896		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000395418		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000585089		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000585313		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000578122		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
intron-5UTR	ENST00000261641	ENST00000578985		TCGA	RV	LUSC	TCGA-33-4533-01A	RAI1	chr17	17627473	+	IFT20	chr17	26659013	-
5UTR-3CDS	ENST00000341084	ENST00000361005		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000341084	ENST00000342836		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000341084	ENST00000429677		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000341084	ENST00000379405		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
5UTR-intron	ENST00000341084	ENST00000495682		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000519449	ENST00000361005		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000519449	ENST00000342836		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000519449	ENST00000429677		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000519449	ENST00000379405		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000519449	ENST00000495682		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000523255	ENST00000361005		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000523255	ENST00000342836		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000523255	ENST00000429677		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000523255	ENST00000379405		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000523255	ENST00000495682		TCGA	RV	LUSC	TCGA-21-1080-01A	RNF19A	chr8	101322095	-	PRSS3	chr9	33796641	+
5CDS-5UTR	ENST00000437809	ENST00000488498		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000437809	ENST00000368243		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000368331	ENST00000488498		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000368331	ENST00000368243		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000271883	ENST00000488498		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000271883	ENST00000368243		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000361040	ENST00000488498		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000361040	ENST00000368243		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5UTR-5UTR	ENST00000471341	ENST00000488498		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
5UTR-5UTR	ENST00000471341	ENST00000368243		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	GON4L	chr1	155753777	-	C1orf61	chr1	156374393	-
In-frame	ENST00000254043	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
In-frame	ENST00000254043	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
Frame-shit	ENST00000393974	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
Frame-shit	ENST00000393974	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
Frame-shit	ENST00000393981	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
Frame-shit	ENST00000393981	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
Frame-shit	ENST00000393976	ENST00000348225		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
Frame-shit	ENST00000393976	ENST00000393083		TCGA	RV	LUSC	TCGA-85-A4QR-01A	KRT15	chr17	39669998	-	PTN	chr7	136938384	-
In-frame	ENST00000264474	ENST00000490131		TCGA	RV	LUSC	TCGA-92-8065-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
In-frame	ENST00000264474	ENST00000498619		TCGA	RV	LUSC	TCGA-92-8065-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
In-frame	ENST00000264474	ENST00000296154		TCGA	RV	LUSC	TCGA-92-8065-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000479204	ENST00000490131		TCGA	RV	LUSC	TCGA-92-8065-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000479204	ENST00000498619		TCGA	RV	LUSC	TCGA-92-8065-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000479204	ENST00000296154		TCGA	RV	LUSC	TCGA-92-8065-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
In-frame	ENST00000261721	ENST00000312475		TCGA	RV	LUSC	TCGA-66-2758-01A	BTBD1	chr15	83725141	-	MRPL46	chr15	89009004	-
5CDS-intron	ENST00000261721	ENST00000559538		TCGA	RV	LUSC	TCGA-66-2758-01A	BTBD1	chr15	83725141	-	MRPL46	chr15	89009004	-
In-frame	ENST00000379403	ENST00000312475		TCGA	RV	LUSC	TCGA-66-2758-01A	BTBD1	chr15	83725141	-	MRPL46	chr15	89009004	-
5CDS-intron	ENST00000379403	ENST00000559538		TCGA	RV	LUSC	TCGA-66-2758-01A	BTBD1	chr15	83725141	-	MRPL46	chr15	89009004	-
intron-3CDS	ENST00000560015	ENST00000312475		TCGA	RV	LUSC	TCGA-66-2758-01A	BTBD1	chr15	83725141	-	MRPL46	chr15	89009004	-
intron-intron	ENST00000560015	ENST00000559538		TCGA	RV	LUSC	TCGA-66-2758-01A	BTBD1	chr15	83725141	-	MRPL46	chr15	89009004	-
3UTR-3UTR	ENST00000460736	ENST00000344773		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
3UTR-3UTR	ENST00000460736	ENST00000379624		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
3UTR-3UTR	ENST00000460736	ENST00000342045		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
3UTR-3UTR	ENST00000460736	ENST00000379632		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
3UTR-3UTR	ENST00000460736	ENST00000361704		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
3UTR-intron	ENST00000460736	ENST00000603461		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000379619	ENST00000344773		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000379619	ENST00000379624		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000379619	ENST00000342045		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000379619	ENST00000379632		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000379619	ENST00000361704		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-intron	ENST00000379619	ENST00000603461		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000264716	ENST00000344773		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000264716	ENST00000379624		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000264716	ENST00000342045		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000264716	ENST00000379632		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000264716	ENST00000361704		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-intron	ENST00000264716	ENST00000603461		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000545753	ENST00000344773		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000545753	ENST00000379624		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000545753	ENST00000342045		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000545753	ENST00000379632		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-3UTR	ENST00000545753	ENST00000361704		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
5CDS-intron	ENST00000545753	ENST00000603461		TCGA	RV	LUSC	TCGA-66-2771-01A	FOSL2	chr2	28627225	+	BRE	chr2	28561317	+
Frame-shit	ENST00000446778	ENST00000275605		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
Frame-shit	ENST00000446778	ENST00000395471		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
5CDS-5UTR	ENST00000446778	ENST00000459834		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
Frame-shit	ENST00000322090	ENST00000275605		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
Frame-shit	ENST00000322090	ENST00000395471		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
5CDS-5UTR	ENST00000322090	ENST00000459834		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
intron-3CDS	ENST00000487370	ENST00000275605		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
intron-3CDS	ENST00000487370	ENST00000395471		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
intron-5UTR	ENST00000487370	ENST00000459834		TCGA	RV	LUSC	TCGA-21-A5DI-01A	GBAS	chr7	56032394	+	PSPH	chr7	56082864	-
Frame-shit	ENST00000395290	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000395290	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000395290	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
Frame-shit	ENST00000358597	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000358597	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000358597	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
Frame-shit	ENST00000395292	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000395292	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000395292	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
In-frame	ENST00000310513	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000310513	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000310513	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
Frame-shit	ENST00000361904	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000361904	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000361904	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5UTR-3CDS	ENST00000539455	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5UTR-5UTR	ENST00000539455	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5UTR-intron	ENST00000539455	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
Frame-shit	ENST00000531165	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000531165	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000531165	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
Frame-shit	ENST00000532048	ENST00000302503		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-5UTR	ENST00000532048	ENST00000542981		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
5CDS-intron	ENST00000532048	ENST00000534074		TCGA	RV	LUSC	TCGA-43-6771-01A	CELF1	chr11	47494640	-	MTCH2	chr11	47660603	-
Frame-shit	ENST00000477593	ENST00000302334		TCGA	RV	LUSC	TCGA-66-2756-01A	PIK3CB	chr3	138452203	-	BFSP2	chr3	133185672	+
5CDS-3UTR	ENST00000477593	ENST00000511434		TCGA	RV	LUSC	TCGA-66-2756-01A	PIK3CB	chr3	138452203	-	BFSP2	chr3	133185672	+
intron-3CDS	ENST00000544716	ENST00000302334		TCGA	RV	LUSC	TCGA-66-2756-01A	PIK3CB	chr3	138452203	-	BFSP2	chr3	133185672	+
intron-3UTR	ENST00000544716	ENST00000511434		TCGA	RV	LUSC	TCGA-66-2756-01A	PIK3CB	chr3	138452203	-	BFSP2	chr3	133185672	+
In-frame	ENST00000289153	ENST00000302334		TCGA	RV	LUSC	TCGA-66-2756-01A	PIK3CB	chr3	138452203	-	BFSP2	chr3	133185672	+
5CDS-3UTR	ENST00000289153	ENST00000511434		TCGA	RV	LUSC	TCGA-66-2756-01A	PIK3CB	chr3	138452203	-	BFSP2	chr3	133185672	+
In-frame	ENST00000331457	ENST00000536101		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
In-frame	ENST00000331457	ENST00000335473		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
In-frame	ENST00000331457	ENST00000407587		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
5CDS-intron	ENST00000331457	ENST00000536204		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
3UTR-3CDS	ENST00000433341	ENST00000536101		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
3UTR-3CDS	ENST00000433341	ENST00000335473		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
3UTR-3CDS	ENST00000433341	ENST00000407587		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
3UTR-intron	ENST00000433341	ENST00000536204		TCGA	RV	LUSC	TCGA-33-4532-01A	DRG1	chr22	31799190	+	MYO18B	chr22	26317224	+
Frame-shit	ENST00000270460	ENST00000450554		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
Frame-shit	ENST00000270460	ENST00000308924		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
In-frame	ENST00000270460	ENST00000590551		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
Frame-shit	ENST00000085079	ENST00000450554		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
Frame-shit	ENST00000085079	ENST00000308924		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
In-frame	ENST00000085079	ENST00000590551		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
Frame-shit	ENST00000411543	ENST00000450554		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
Frame-shit	ENST00000411543	ENST00000308924		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
In-frame	ENST00000411543	ENST00000590551		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
intron-3CDS	ENST00000591743	ENST00000450554		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
intron-3CDS	ENST00000591743	ENST00000308924		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
intron-3CDS	ENST00000591743	ENST00000590551		TCGA	RV	LUSC	TCGA-33-4547-01A	EPN1	chr19	56190221	+	U2AF2	chr19	56185300	+
In-frame	ENST00000254051	ENST00000246657		TCGA	RV	LUSC	TCGA-33-AASI-01A	TNS4	chr17	38640736	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000254051	ENST00000579344		TCGA	RV	LUSC	TCGA-33-AASI-01A	TNS4	chr17	38640736	-	CCR7	chr17	38715194	-
In-frame	ENST00000357559	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000357559	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-5UTR	ENST00000357559	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-intron	ENST00000357559	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-3CDS	ENST00000305586	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-3CDS	ENST00000305586	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-5UTR	ENST00000305586	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-intron	ENST00000305586	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000491674	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000491674	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-5UTR	ENST00000491674	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-intron	ENST00000491674	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000491062	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000491062	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-5UTR	ENST00000491062	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-intron	ENST00000491062	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-3CDS	ENST00000468861	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-3CDS	ENST00000468861	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-5UTR	ENST00000468861	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5UTR-intron	ENST00000468861	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000445140	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000445140	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-5UTR	ENST00000445140	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
5CDS-intron	ENST00000445140	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
intron-3CDS	ENST00000480918	ENST00000265594		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
intron-3CDS	ENST00000480918	ENST00000492597		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
intron-5UTR	ENST00000480918	ENST00000539926		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
intron-intron	ENST00000480918	ENST00000489909		TCGA	RV	LUSC	TCGA-85-8580-01A	FXR1	chr3	180630524	+	MCCC1	chr3	182790275	-
In-frame	ENST00000588262	ENST00000595483		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
In-frame	ENST00000588262	ENST00000263368		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
In-frame	ENST00000252530	ENST00000595483		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
In-frame	ENST00000252530	ENST00000263368		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
In-frame	ENST00000343358	ENST00000595483		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
In-frame	ENST00000343358	ENST00000263368		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
3UTR-3CDS	ENST00000585954	ENST00000595483		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
3UTR-3CDS	ENST00000585954	ENST00000263368		TCGA	RV	LUSC	TCGA-LA-A7SW-01A	FAM98C	chr19	38894334	+	BLVRB	chr19	40964452	-
intron-5UTR	ENST00000513024	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000513024	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000513024	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000509638	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000509638	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000509638	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000508501	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000508501	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000508501	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512946	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512946	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512946	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000313860	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000313860	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000313860	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512632	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512632	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512632	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512820	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512820	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
5CDS-5UTR	ENST00000512820	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503057	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503057	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503057	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000511496	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000511496	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000511496	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000514096	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000514096	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000514096	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000509277	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000509277	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000509277	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000396595	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000396595	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000396595	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000381753	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000381753	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000381753	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000509454	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000509454	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000509454	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000515785	ENST00000508632		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000515785	ENST00000508069		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000515785	ENST00000273860		TCGA	RV	LUSC	TCGA-22-A5C4-01A	LIMCH1	chr4	41362953	+	OCIAD2	chr4	48906628	-
Frame-shit	ENST00000253055	ENST00000582783		TCGA	RV	LUSC	TCGA-85-A510-01A	MAP3K10	chr19	40715126	+	C19orf47	chr19	40847797	-
5CDS-5UTR	ENST00000253055	ENST00000392035		TCGA	RV	LUSC	TCGA-85-A510-01A	MAP3K10	chr19	40715126	+	C19orf47	chr19	40847797	-
5CDS-intron	ENST00000253055	ENST00000584868		TCGA	RV	LUSC	TCGA-85-A510-01A	MAP3K10	chr19	40715126	+	C19orf47	chr19	40847797	-
intron-3CDS	ENST00000593906	ENST00000582783		TCGA	RV	LUSC	TCGA-85-A510-01A	MAP3K10	chr19	40715126	+	C19orf47	chr19	40847797	-
intron-5UTR	ENST00000593906	ENST00000392035		TCGA	RV	LUSC	TCGA-85-A510-01A	MAP3K10	chr19	40715126	+	C19orf47	chr19	40847797	-
intron-intron	ENST00000593906	ENST00000584868		TCGA	RV	LUSC	TCGA-85-A510-01A	MAP3K10	chr19	40715126	+	C19orf47	chr19	40847797	-
5UTR-3CDS	ENST00000395555	ENST00000216181		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000395555	ENST00000475726		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000395555	ENST00000401701		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-3CDS	ENST00000494157	ENST00000216181		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000494157	ENST00000475726		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000494157	ENST00000401701		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-3CDS	ENST00000225740	ENST00000216181		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000225740	ENST00000475726		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000225740	ENST00000401701		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
intron-3CDS	ENST00000444455	ENST00000216181		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
intron-intron	ENST00000444455	ENST00000475726		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
intron-intron	ENST00000444455	ENST00000401701		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
intron-3CDS	ENST00000457500	ENST00000216181		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
intron-intron	ENST00000457500	ENST00000475726		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
intron-intron	ENST00000457500	ENST00000401701		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-3CDS	ENST00000485231	ENST00000216181		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000485231	ENST00000475726		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
5UTR-intron	ENST00000485231	ENST00000401701		TCGA	RV	LUSC	TCGA-33-6737-01A	ALDH3A1	chr17	19651572	-	MYH9	chr22	36723533	-
Frame-shit	ENST00000455385	ENST00000312814		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
Frame-shit	ENST00000455385	ENST00000454074		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
5CDS-intron	ENST00000455385	ENST00000480969		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
Frame-shit	ENST00000011473	ENST00000312814		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
Frame-shit	ENST00000011473	ENST00000454074		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
5CDS-intron	ENST00000011473	ENST00000480969		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
Frame-shit	ENST00000470347	ENST00000312814		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
In-frame	ENST00000470347	ENST00000454074		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
5CDS-intron	ENST00000470347	ENST00000480969		TCGA	RV	LUSC	TCGA-39-5011-01A	SYPL1	chr7	105738136	-	TMEM168	chr7	112407799	-
In-frame	ENST00000548249	ENST00000308025		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
5CDS-intron	ENST00000548249	ENST00000553182		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
intron-3CDS	ENST00000537439	ENST00000308025		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
intron-intron	ENST00000537439	ENST00000553182		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
In-frame	ENST00000434715	ENST00000308025		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
5CDS-intron	ENST00000434715	ENST00000553182		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
In-frame	ENST00000543672	ENST00000308025		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
5CDS-intron	ENST00000543672	ENST00000553182		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
intron-3CDS	ENST00000551400	ENST00000308025		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
intron-intron	ENST00000551400	ENST00000553182		TCGA	RV	LUSC	TCGA-85-6175-01A	DCTN2	chr12	57939811	-	DDX23	chr12	49230049	-
intron-3CDS	ENST00000425759	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000425759	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000425759	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000425759	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000292733	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000292733	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000292733	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000292733	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000542773	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000542773	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000542773	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000542773	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000263205	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000263205	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000263205	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000263205	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000406969	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000406969	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000406969	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000406969	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000382974	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000382974	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000382974	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000382974	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000541476	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000541476	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000541476	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000541476	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000478831	ENST00000255882		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-3CDS	ENST00000478831	ENST00000572273		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000478831	ENST00000414196		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
intron-intron	ENST00000478831	ENST00000466162		TCGA	RV	LUSC	TCGA-66-2793-01A	MED15	chr22	20855123	+	PI4KA	chr22	21104282	-
In-frame	ENST00000535891	ENST00000341056		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000535891	ENST00000396045		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000535891	ENST00000310758		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000535891	ENST00000396040		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000535891	ENST00000442504		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000535891	ENST00000448602		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000535891	ENST00000479447		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
In-frame	ENST00000258749	ENST00000341056		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000258749	ENST00000396045		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000258749	ENST00000310758		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000258749	ENST00000396040		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000258749	ENST00000442504		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000258749	ENST00000448602		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000258749	ENST00000479447		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
In-frame	ENST00000431169	ENST00000341056		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000431169	ENST00000396045		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000431169	ENST00000310758		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000431169	ENST00000396040		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000431169	ENST00000442504		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-5UTR	ENST00000431169	ENST00000448602		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
5CDS-intron	ENST00000431169	ENST00000479447		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-3CDS	ENST00000538464	ENST00000341056		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000538464	ENST00000396045		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000538464	ENST00000310758		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000538464	ENST00000396040		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000538464	ENST00000442504		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000538464	ENST00000448602		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-intron	ENST00000538464	ENST00000479447		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-3CDS	ENST00000491444	ENST00000341056		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000491444	ENST00000396045		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000491444	ENST00000310758		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000491444	ENST00000396040		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000491444	ENST00000442504		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-5UTR	ENST00000491444	ENST00000448602		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
intron-intron	ENST00000491444	ENST00000479447		TCGA	RV	LUSC	TCGA-77-7140-01A	AOAH	chr7	36698771	-	ELMO1	chr7	36934622	-
In-frame	ENST00000215567	ENST00000242783		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5CDS-intron	ENST00000215567	ENST00000587429		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5CDS-intron	ENST00000215567	ENST00000342216		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-3CDS	ENST00000596073	ENST00000242783		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000596073	ENST00000587429		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000596073	ENST00000342216		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-3CDS	ENST00000600083	ENST00000242783		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000600083	ENST00000587429		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000600083	ENST00000342216		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-3CDS	ENST00000436007	ENST00000242783		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000436007	ENST00000587429		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000436007	ENST00000342216		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
3UTR-3CDS	ENST00000596164	ENST00000242783		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
3UTR-intron	ENST00000596164	ENST00000587429		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
3UTR-intron	ENST00000596164	ENST00000342216		TCGA	RV	LUSC	TCGA-43-7658-01A	TECR	chr19	14640523	+	PKN1	chr19	14574479	+
5UTR-intron	ENST00000540637	ENST00000468758		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
5UTR-intron	ENST00000540637	ENST00000409645		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
5UTR-intron	ENST00000540637	ENST00000281923		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
5UTR-intron	ENST00000497432	ENST00000468758		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
5UTR-intron	ENST00000497432	ENST00000409645		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
5UTR-intron	ENST00000497432	ENST00000281923		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
intron-intron	ENST00000264192	ENST00000468758		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
intron-intron	ENST00000264192	ENST00000409645		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
intron-intron	ENST00000264192	ENST00000281923		TCGA	RV	LUSC	TCGA-66-2756-01A	CYTIP	chr2	158343844	-	MGAT5	chr2	135027957	+
Frame-shit	ENST00000450554	ENST00000332836		TCGA	RV	LUSC	TCGA-33-4547-01A	U2AF2	chr19	56181058	+	NLRP9	chr19	56220410	-
Frame-shit	ENST00000308924	ENST00000332836		TCGA	RV	LUSC	TCGA-33-4547-01A	U2AF2	chr19	56181058	+	NLRP9	chr19	56220410	-
Frame-shit	ENST00000590551	ENST00000332836		TCGA	RV	LUSC	TCGA-33-4547-01A	U2AF2	chr19	56181058	+	NLRP9	chr19	56220410	-
In-frame	ENST00000252699	ENST00000593149		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000252699	ENST00000248342		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000593062		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000538434		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000588934		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000545173		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000252699	ENST00000592558		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000424234	ENST00000593149		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000424234	ENST00000248342		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000593062		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000538434		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000588934		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000545173		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000424234	ENST00000592558		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000390009	ENST00000593149		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
In-frame	ENST00000390009	ENST00000248342		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000593062		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000538434		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000588934		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000545173		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
5CDS-intron	ENST00000390009	ENST00000592558		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-3CDS	ENST00000497637	ENST00000593149		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-3CDS	ENST00000497637	ENST00000248342		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000593062		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000538434		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000588934		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000545173		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
intron-intron	ENST00000497637	ENST00000592558		TCGA	RV	LUSC	TCGA-63-A5MM-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39123070	+
Frame-shit	ENST00000534328	ENST00000532097		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
In-frame	ENST00000534328	ENST00000431206		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
Frame-shit	ENST00000534328	ENST00000352303		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
5CDS-3UTR	ENST00000534328	ENST00000532025		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
Frame-shit	ENST00000332231	ENST00000532097		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
In-frame	ENST00000332231	ENST00000431206		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
Frame-shit	ENST00000332231	ENST00000352303		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
5CDS-3UTR	ENST00000332231	ENST00000532025		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
Frame-shit	ENST00000448903	ENST00000532097		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
In-frame	ENST00000448903	ENST00000431206		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
Frame-shit	ENST00000448903	ENST00000352303		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
5CDS-3UTR	ENST00000448903	ENST00000532025		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
intron-3CDS	ENST00000525891	ENST00000532097		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
intron-3CDS	ENST00000525891	ENST00000431206		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
intron-3CDS	ENST00000525891	ENST00000352303		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
intron-3UTR	ENST00000525891	ENST00000532025		TCGA	RV	LUSC	TCGA-66-2758-01A	AP2A2	chr11	977224	+	PSMD13	chr11	252505	+
5CDS-intron	ENST00000549920	ENST00000408982		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000549920	ENST00000262477		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000549920	ENST00000537505		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000549920	ENST00000546142		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000549920	ENST00000341923		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000549920	ENST00000570487		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000550645	ENST00000408982		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000550645	ENST00000262477		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000550645	ENST00000537505		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000550645	ENST00000546142		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000550645	ENST00000341923		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000550645	ENST00000570487		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000552588	ENST00000408982		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000552588	ENST00000262477		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000552588	ENST00000537505		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000552588	ENST00000546142		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000552588	ENST00000341923		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000552588	ENST00000570487		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000549273	ENST00000408982		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000549273	ENST00000262477		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000549273	ENST00000537505		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000549273	ENST00000546142		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000549273	ENST00000341923		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000549273	ENST00000570487		TCGA	RV	LUSC	TCGA-90-A4ED-01A	RPL18	chr19	49118590	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000496817	ENST00000404460		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000303908		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409158		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000403716		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000234115		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000439822		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000487980		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000438882		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000538982		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409612		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409279		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000404460		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000303908		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409158		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000403716		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000234115		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000439822		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000487980		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000438882		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000538982		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409612		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409279		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000404460		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000303908		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409158		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000403716		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000234115		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000439822		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000487980		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000438882		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000538982		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409612		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409279		TCGA	RV	LUSC	TCGA-85-A50M-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
Frame-shit	ENST00000372978	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372978	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372978	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000372978	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000372978	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000494547	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000494547	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000494547	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000494547	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000494547	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000456846	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000456846	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000456846	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000456846	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000456846	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372982	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372982	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372982	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000372982	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000372982	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000472818	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000472818	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000472818	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000472818	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000472818	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372977	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372977	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000372977	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000372977	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000372977	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
3UTR-3CDS	ENST00000482926	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
3UTR-3CDS	ENST00000482926	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
3UTR-3CDS	ENST00000482926	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
3UTR-3UTR	ENST00000482926	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
3UTR-intron	ENST00000482926	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000465926	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000465926	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000465926	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000465926	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000465926	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000482432	ENST00000368919		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000482432	ENST00000330550		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000482432	ENST00000439654		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-3UTR	ENST00000482432	ENST00000456137		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
5CDS-intron	ENST00000482432	ENST00000461487		TCGA	RV	LUSC	TCGA-43-A475-01A	TAF8	chr6	42023752	+	SLC22A16	chr6	110763978	-
Frame-shit	ENST00000369135	ENST00000368985		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	CTSS	chr1	150705621	-
Frame-shit	ENST00000369135	ENST00000448301		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	CTSS	chr1	150705621	-
5CDS-intron	ENST00000369135	ENST00000480760		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	CTSS	chr1	150705621	-
intron-3CDS	ENST00000479905	ENST00000368985		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	CTSS	chr1	150705621	-
intron-3CDS	ENST00000479905	ENST00000448301		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	CTSS	chr1	150705621	-
intron-intron	ENST00000479905	ENST00000480760		TCGA	RV	LUSC	TCGA-68-7755-01A	OTUD7B	chr1	149949361	-	CTSS	chr1	150705621	-
In-frame	ENST00000416426	ENST00000578892		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000416426	ENST00000578379		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000416426	ENST00000449662		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000416426	ENST00000579788		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000416426	ENST00000418105		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000416426	ENST00000412356		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000416426	ENST00000581417		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000416426	ENST00000579687		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000284073	ENST00000578892		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000284073	ENST00000578379		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000284073	ENST00000449662		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000284073	ENST00000579788		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000284073	ENST00000418105		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000284073	ENST00000412356		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000284073	ENST00000581417		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000284073	ENST00000579687		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000322684	ENST00000578892		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000322684	ENST00000578379		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000322684	ENST00000449662		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000322684	ENST00000579788		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000322684	ENST00000418105		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000322684	ENST00000412356		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000322684	ENST00000581417		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000322684	ENST00000579687		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000442934	ENST00000578892		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000442934	ENST00000578379		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000442934	ENST00000449662		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000442934	ENST00000579788		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000442934	ENST00000418105		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000442934	ENST00000412356		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000442934	ENST00000581417		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000442934	ENST00000579687		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000579180	ENST00000578892		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000579180	ENST00000578379		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000579180	ENST00000449662		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000579180	ENST00000579788		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000579180	ENST00000418105		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000579180	ENST00000412356		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000579180	ENST00000581417		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
5CDS-5UTR	ENST00000579180	ENST00000579687		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-3CDS	ENST00000579505	ENST00000578892		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-3CDS	ENST00000579505	ENST00000578379		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-3CDS	ENST00000579505	ENST00000449662		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-3CDS	ENST00000579505	ENST00000579788		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-3CDS	ENST00000579505	ENST00000418105		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-3CDS	ENST00000579505	ENST00000412356		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-5UTR	ENST00000579505	ENST00000581417		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
3UTR-5UTR	ENST00000579505	ENST00000579687		TCGA	RV	LUSC	TCGA-66-2783-01A	MSI2	chr17	55704664	+	ICAM2	chr17	62081324	-
In-frame	ENST00000259119	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000259119	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000259119	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000259119	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000259119	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000259119	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000259119	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000426052	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000426052	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000426052	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000426052	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000426052	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000426052	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000426052	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-3CDS	ENST00000490989	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-3CDS	ENST00000490989	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-3CDS	ENST00000490989	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-intron	ENST00000490989	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-intron	ENST00000490989	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-intron	ENST00000490989	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
intron-intron	ENST00000490989	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000413427	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000413427	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000413427	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000413427	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000413427	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000413427	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000413427	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000458537	ENST00000415807		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000458537	ENST00000336824		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000458537	ENST00000416957		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000458537	ENST00000392699		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000458537	ENST00000421757		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000458537	ENST00000423424		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
5CDS-intron	ENST00000458537	ENST00000476794		TCGA	RV	LUSC	TCGA-56-7580-01A	SKIL	chr3	170079217	+	FNDC3B	chr3	172064117	+
In-frame	ENST00000398645	ENST00000308831		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000398645	ENST00000533360		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000398645	ENST00000532559		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000529006	ENST00000308831		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000529006	ENST00000533360		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000529006	ENST00000532559		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000526258	ENST00000308831		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000526258	ENST00000533360		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000526258	ENST00000532559		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000308783	ENST00000308831		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000308783	ENST00000533360		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000308783	ENST00000532559		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530342	ENST00000308831		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530342	ENST00000533360		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000530342	ENST00000532559		TCGA	RV	LUSC	TCGA-33-6737-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5UTR-3CDS	ENST00000415807	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
5UTR-intron	ENST00000415807	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-3CDS	ENST00000336824	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-intron	ENST00000336824	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-3CDS	ENST00000416957	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-intron	ENST00000416957	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
5UTR-3CDS	ENST00000392699	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
5UTR-intron	ENST00000392699	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
5UTR-3CDS	ENST00000421757	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
5UTR-intron	ENST00000421757	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-3CDS	ENST00000423424	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-intron	ENST00000423424	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-3CDS	ENST00000476794	ENST00000231706		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-intron	ENST00000476794	ENST00000466168		TCGA	RV	LUSC	TCGA-51-6867-01A	FNDC3B	chr3	171757561	+	SLC7A14	chr3	170204157	-
intron-3CDS	ENST00000525975	ENST00000529052		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000525975	ENST00000531526		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000525975	ENST00000389968		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000525975	ENST00000401752		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000525975	ENST00000325468		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000525975	ENST00000536139		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000379016	ENST00000529052		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000379016	ENST00000531526		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000379016	ENST00000389968		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000379016	ENST00000401752		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000379016	ENST00000325468		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000379016	ENST00000536139		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000303296	ENST00000529052		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000303296	ENST00000531526		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000303296	ENST00000389968		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000303296	ENST00000401752		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000303296	ENST00000325468		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
5UTR-3CDS	ENST00000303296	ENST00000536139		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000456517	ENST00000529052		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000456517	ENST00000531526		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000456517	ENST00000389968		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000456517	ENST00000401752		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000456517	ENST00000325468		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000456517	ENST00000536139		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000534262	ENST00000529052		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000534262	ENST00000531526		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000534262	ENST00000389968		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000534262	ENST00000401752		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000534262	ENST00000325468		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
intron-3CDS	ENST00000534262	ENST00000536139		TCGA	RV	LUSC	TCGA-43-6771-01A	HIPK3	chr11	33279435	+	GYLTL1B	chr11	45947773	+
Frame-shit	ENST00000375370	ENST00000332556		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
Frame-shit	ENST00000375370	ENST00000397181		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5CDS-intron	ENST00000375370	ENST00000471046		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5UTR-3CDS	ENST00000538138	ENST00000332556		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5UTR-3CDS	ENST00000538138	ENST00000397181		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5UTR-intron	ENST00000538138	ENST00000471046		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
3UTR-3CDS	ENST00000465174	ENST00000332556		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
3UTR-3CDS	ENST00000465174	ENST00000397181		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
3UTR-intron	ENST00000465174	ENST00000471046		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5UTR-3CDS	ENST00000544902	ENST00000332556		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5UTR-3CDS	ENST00000544902	ENST00000397181		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
5UTR-intron	ENST00000544902	ENST00000471046		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114240164	+	LAMP1	chr13	113973784	+
Frame-shit	ENST00000262738	ENST00000404234		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000262738	ENST00000529632		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000262738	ENST00000360929		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000262738	ENST00000248933		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000262738	ENST00000343706		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-5UTR	ENST00000262738	ENST00000402979		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-5UTR	ENST00000262738	ENST00000403121		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-intron	ENST00000262738	ENST00000411842		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-intron	ENST00000262738	ENST00000494013		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000395964	ENST00000404234		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000395964	ENST00000529632		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000395964	ENST00000360929		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000395964	ENST00000248933		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
Frame-shit	ENST00000395964	ENST00000343706		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-5UTR	ENST00000395964	ENST00000402979		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-5UTR	ENST00000395964	ENST00000403121		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-intron	ENST00000395964	ENST00000411842		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-intron	ENST00000395964	ENST00000494013		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-3CDS	ENST00000497509	ENST00000404234		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-3CDS	ENST00000497509	ENST00000529632		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-3CDS	ENST00000497509	ENST00000360929		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-3CDS	ENST00000497509	ENST00000248933		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-3CDS	ENST00000497509	ENST00000343706		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-5UTR	ENST00000497509	ENST00000402979		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-5UTR	ENST00000497509	ENST00000403121		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-intron	ENST00000497509	ENST00000411842		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5UTR-intron	ENST00000497509	ENST00000494013		TCGA	RV	LUSC	TCGA-46-6025-01A	CELSR1	chr22	46929524	-	SEZ6L	chr22	26688372	+
5CDS-5UTR	ENST00000496455	ENST00000312275		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-intron	ENST00000496455	ENST00000498159		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000496455	ENST00000468043		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000496455	ENST00000459838		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000496455	ENST00000461040		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000496455	ENST00000449199		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000496455	ENST00000426338		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000295920	ENST00000312275		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-intron	ENST00000295920	ENST00000498159		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000295920	ENST00000468043		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000295920	ENST00000459838		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000295920	ENST00000461040		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000295920	ENST00000449199		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000295920	ENST00000426338		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000476145	ENST00000312275		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-intron	ENST00000476145	ENST00000498159		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000476145	ENST00000468043		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000476145	ENST00000459838		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000476145	ENST00000461040		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000476145	ENST00000449199		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000476145	ENST00000426338		TCGA	RV	LUSC	TCGA-66-2766-01A	GMPS	chr3	155588686	+	C3orf55	chr3	157271019	+
Frame-shit	ENST00000397668	ENST00000592204		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000397668	ENST00000393233		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000397668	ENST00000589272		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000397668	ENST00000322912		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000397668	ENST00000458671		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000264827	ENST00000592204		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000264827	ENST00000393233		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000264827	ENST00000589272		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000264827	ENST00000322912		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
Frame-shit	ENST00000264827	ENST00000458671		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000589965	ENST00000592204		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000589965	ENST00000393233		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000589965	ENST00000589272		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000589965	ENST00000322912		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
intron-3CDS	ENST00000589965	ENST00000458671		TCGA	RV	LUSC	TCGA-18-3415-01A	HOOK2	chr19	12885483	-	RTBDN	chr19	12937685	-
In-frame	ENST00000362003	ENST00000300027		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000362003	ENST00000310775		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000362003	ENST00000451393		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000362003	ENST00000567996		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-3UTR	ENST00000362003	ENST00000566615		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-3CDS	ENST00000400151	ENST00000300027		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-3CDS	ENST00000400151	ENST00000310775		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-intron	ENST00000400151	ENST00000451393		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-intron	ENST00000400151	ENST00000567996		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-3UTR	ENST00000400151	ENST00000566615		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-3CDS	ENST00000482726	ENST00000300027		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-3CDS	ENST00000482726	ENST00000310775		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-intron	ENST00000482726	ENST00000451393		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-intron	ENST00000482726	ENST00000567996		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
intron-3UTR	ENST00000482726	ENST00000566615		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000470161	ENST00000300027		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000470161	ENST00000310775		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000470161	ENST00000451393		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000470161	ENST00000567996		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-3UTR	ENST00000470161	ENST00000566615		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000521023	ENST00000300027		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000521023	ENST00000310775		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000521023	ENST00000451393		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000521023	ENST00000567996		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-3UTR	ENST00000521023	ENST00000566615		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000505655	ENST00000300027		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
In-frame	ENST00000505655	ENST00000310775		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000505655	ENST00000451393		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-intron	ENST00000505655	ENST00000567996		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
5CDS-3UTR	ENST00000505655	ENST00000566615		TCGA	RV	LUSC	TCGA-43-6770-01A	PCGF3	chr4	738476	+	FANCI	chr15	89856135	+
Frame-shit	ENST00000545472	ENST00000437079		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000545472	ENST00000287546		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000545472	ENST00000436792		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000545472	ENST00000446204		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5CDS-intron	ENST00000545472	ENST00000424463		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5CDS-intron	ENST00000545472	ENST00000463687		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000296257	ENST00000437079		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000296257	ENST00000287546		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000296257	ENST00000436792		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
Frame-shit	ENST00000296257	ENST00000446204		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5CDS-intron	ENST00000296257	ENST00000424463		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5CDS-intron	ENST00000296257	ENST00000463687		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5UTR-3CDS	ENST00000427465	ENST00000437079		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5UTR-3CDS	ENST00000427465	ENST00000287546		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5UTR-3CDS	ENST00000427465	ENST00000436792		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5UTR-3CDS	ENST00000427465	ENST00000446204		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5UTR-intron	ENST00000427465	ENST00000424463		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
5UTR-intron	ENST00000427465	ENST00000463687		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
3UTR-3CDS	ENST00000465201	ENST00000437079		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
3UTR-3CDS	ENST00000465201	ENST00000287546		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
3UTR-3CDS	ENST00000465201	ENST00000436792		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
3UTR-3CDS	ENST00000465201	ENST00000446204		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
3UTR-intron	ENST00000465201	ENST00000424463		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
3UTR-intron	ENST00000465201	ENST00000463687		TCGA	RV	LUSC	TCGA-56-8628-01A	SENP2	chr3	185307957	+	VPS8	chr3	184742124	+
In-frame	ENST00000400301	ENST00000374332		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
Frame-shit	ENST00000400301	ENST00000263979		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000400301	ENST00000473891		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000400301	ENST00000374329		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
In-frame	ENST00000308271	ENST00000374332		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
Frame-shit	ENST00000308271	ENST00000263979		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000308271	ENST00000473891		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000308271	ENST00000374329		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-3CDS	ENST00000374732	ENST00000374332		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-3CDS	ENST00000374732	ENST00000263979		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-intron	ENST00000374732	ENST00000473891		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-intron	ENST00000374732	ENST00000374329		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
In-frame	ENST00000529637	ENST00000374332		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
Frame-shit	ENST00000529637	ENST00000263979		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000529637	ENST00000473891		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000529637	ENST00000374329		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-3CDS	ENST00000479177	ENST00000374332		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-3CDS	ENST00000479177	ENST00000263979		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-intron	ENST00000479177	ENST00000473891		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
intron-intron	ENST00000479177	ENST00000374329		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
In-frame	ENST00000421625	ENST00000374332		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
Frame-shit	ENST00000421625	ENST00000263979		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000421625	ENST00000473891		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
5CDS-intron	ENST00000421625	ENST00000374329		TCGA	RV	LUSC	TCGA-85-8070-01A	USP48	chr1	22109317	-	MAN1C1	chr1	26110154	+
In-frame	ENST00000356208	ENST00000398540		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
In-frame	ENST00000356208	ENST00000542259		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
5CDS-intron	ENST00000356208	ENST00000497757		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
5CDS-intron	ENST00000356208	ENST00000478263		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
intron-3CDS	ENST00000440234	ENST00000398540		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
intron-3CDS	ENST00000440234	ENST00000542259		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
intron-intron	ENST00000440234	ENST00000497757		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
intron-intron	ENST00000440234	ENST00000478263		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
In-frame	ENST00000371219	ENST00000398540		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
In-frame	ENST00000371219	ENST00000542259		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
5CDS-intron	ENST00000371219	ENST00000497757		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
5CDS-intron	ENST00000371219	ENST00000478263		TCGA	RV	LUSC	TCGA-L3-A524-01A	RBM38	chr20	55968389	+	FRMD4B	chr3	69267530	-
5CDS-intron	ENST00000268097	ENST00000542334		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-intron	ENST00000268097	ENST00000268057		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-5UTR	ENST00000268097	ENST00000539603		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-5UTR	ENST00000268097	ENST00000395205		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-3UTR	ENST00000268097	ENST00000564239		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-intron	ENST00000566304	ENST00000542334		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-intron	ENST00000566304	ENST00000268057		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-5UTR	ENST00000566304	ENST00000539603		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-5UTR	ENST00000566304	ENST00000395205		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-3UTR	ENST00000566304	ENST00000564239		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-intron	ENST00000457859	ENST00000542334		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-intron	ENST00000457859	ENST00000268057		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-5UTR	ENST00000457859	ENST00000539603		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-5UTR	ENST00000457859	ENST00000395205		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-3UTR	ENST00000457859	ENST00000564239		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-intron	ENST00000567159	ENST00000542334		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-intron	ENST00000567159	ENST00000268057		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-5UTR	ENST00000567159	ENST00000539603		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-5UTR	ENST00000567159	ENST00000395205		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5CDS-3UTR	ENST00000567159	ENST00000564239		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-intron	ENST00000429918	ENST00000542334		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-intron	ENST00000429918	ENST00000268057		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-5UTR	ENST00000429918	ENST00000539603		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-5UTR	ENST00000429918	ENST00000395205		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-3UTR	ENST00000429918	ENST00000564239		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-intron	ENST00000567213	ENST00000542334		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-intron	ENST00000567213	ENST00000268057		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-5UTR	ENST00000567213	ENST00000539603		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-5UTR	ENST00000567213	ENST00000395205		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
5UTR-3UTR	ENST00000567213	ENST00000564239		TCGA	RV	LUSC	TCGA-L3-A524-01A	HEXA	chr15	72668061	-	BBS4	chr15	72987518	+
In-frame	ENST00000305135	ENST00000323116		TCGA	RV	LUSC	TCGA-56-A4BY-01A	YEATS2	chr3	183495488	+	ATP11B	chr3	182590144	+
5CDS-intron	ENST00000305135	ENST00000493826		TCGA	RV	LUSC	TCGA-56-A4BY-01A	YEATS2	chr3	183495488	+	ATP11B	chr3	182590144	+
5CDS-intron	ENST00000305135	ENST00000482794		TCGA	RV	LUSC	TCGA-56-A4BY-01A	YEATS2	chr3	183495488	+	ATP11B	chr3	182590144	+
intron-3CDS	ENST00000397063	ENST00000242848		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000397063	ENST00000378921		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000397063	ENST00000282007		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000397063	ENST00000470308		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
Frame-shit	ENST00000397062	ENST00000242848		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
5CDS-intron	ENST00000397062	ENST00000378921		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
5CDS-intron	ENST00000397062	ENST00000282007		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
5CDS-intron	ENST00000397062	ENST00000470308		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-3CDS	ENST00000446151	ENST00000242848		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000446151	ENST00000378921		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000446151	ENST00000282007		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000446151	ENST00000470308		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-3CDS	ENST00000464747	ENST00000242848		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000464747	ENST00000378921		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000464747	ENST00000282007		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000464747	ENST00000470308		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-3CDS	ENST00000423513	ENST00000242848		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000423513	ENST00000378921		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000423513	ENST00000282007		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
intron-intron	ENST00000423513	ENST00000470308		TCGA	RV	LUSC	TCGA-18-3415-01A	NFE2L2	chr2	178129260	-	ZC3H13	chr13	46554139	-
5CDS-5UTR	ENST00000525566	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000525566	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000525566	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000525566	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000429002	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000429002	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000429002	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000429002	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000503506	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000503506	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000503506	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000503506	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000526691	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000526691	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000526691	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000526691	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000388854	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000388854	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000388854	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000388854	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000354940	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000354940	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000354940	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000354940	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000526390	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000526390	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000526390	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000526390	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000529546	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000529546	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000529546	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000529546	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000540716	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000540716	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000540716	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000540716	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000524698	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000524698	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-intron	ENST00000524698	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5UTR-5UTR	ENST00000524698	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000542918	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000542918	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000542918	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000542918	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000378070	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000378070	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-intron	ENST00000378070	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
5CDS-5UTR	ENST00000378070	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000397736	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000397736	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000397736	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000397736	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000427956	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000427956	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000427956	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000427956	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000526950	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000526950	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000526950	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000526950	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000526006	ENST00000360814		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000526006	ENST00000546436		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-intron	ENST00000526006	ENST00000548660		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
intron-5UTR	ENST00000526006	ENST00000547583		TCGA	RV	LUSC	TCGA-33-AASB-01A	TXNRD1	chr12	104682818	+	GLT8D2	chr12	104415269	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUSC	TCGA-39-5024-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
5UTR-3CDS	ENST00000361189	ENST00000405460		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
5UTR-3CDS	ENST00000361189	ENST00000425867		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
5UTR-intron	ENST00000361189	ENST00000450321		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
intron-3CDS	ENST00000361557	ENST00000405460		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
intron-3CDS	ENST00000361557	ENST00000425867		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
intron-intron	ENST00000361557	ENST00000450321		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
intron-3CDS	ENST00000511624	ENST00000405460		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
intron-3CDS	ENST00000511624	ENST00000425867		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
intron-intron	ENST00000511624	ENST00000450321		TCGA	RV	LUSC	TCGA-56-6545-01A	PJA2	chr5	108745543	-	GPR98	chr5	90445847	+
In-frame	ENST00000393784	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
5CDS-3UTR	ENST00000393784	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
intron-3CDS	ENST00000519860	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
intron-3UTR	ENST00000519860	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
In-frame	ENST00000523291	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
5CDS-3UTR	ENST00000523291	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
Frame-shit	ENST00000326654	ENST00000523189		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
5CDS-3UTR	ENST00000326654	ENST00000521759		TCGA	RV	LUSC	TCGA-33-6737-01A	ERGIC1	chr5	172341841	+	RANBP17	chr5	170720887	+
Frame-shit	ENST00000598742	ENST00000398599		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000598742	ENST00000221992		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000598742	ENST00000405816		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
5UTR-3CDS	ENST00000221975	ENST00000398599		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
5UTR-3CDS	ENST00000221975	ENST00000221992		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
5UTR-3CDS	ENST00000221975	ENST00000405816		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000593863	ENST00000398599		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000593863	ENST00000221992		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000593863	ENST00000405816		TCGA	RV	LUSC	TCGA-58-8387-01A	RPS19	chr19	42365281	+	CEACAM5	chr19	42231154	+
Frame-shit	ENST00000337344	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
Frame-shit	ENST00000375477	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
Frame-shit	ENST00000375479	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
intron-3CDS	ENST00000493650	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
intron-3CDS	ENST00000375459	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
Frame-shit	ENST00000246505	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
intron-3CDS	ENST00000375457	ENST00000335288		TCGA	RV	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	ATP4B	chr13	114309257	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	RV	LUSC	TCGA-66-2786-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-intron	ENST00000493862	ENST00000414350		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000343632		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000381756		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000405147		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000325180		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000337437		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000406772		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
intron-intron	ENST00000493862	ENST00000488672		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000414350		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000343632		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000381756		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000405147		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000325180		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000337437		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000406772		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
5CDS-intron	ENST00000359114	ENST00000488672		TCGA	LD	LUSC	TCGA-18-3406-01A	NOL12	chr22	38082482	+	GGA1	chr22	38026005	+
In-frame	ENST00000264012	ENST00000261778		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000264012	ENST00000561931		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
In-frame	ENST00000429102	ENST00000261778		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000429102	ENST00000561931		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
intron-3CDS	ENST00000581171	ENST00000261778		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
intron-intron	ENST00000581171	ENST00000561931		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
intron-3CDS	ENST00000569117	ENST00000261778		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
intron-intron	ENST00000569117	ENST00000561931		TCGA	LD	LUSC	TCGA-18-3409-01A	CDH3	chr16	68679653	+	TANGO6	chr16	69007931	+
Frame-shit	ENST00000323669	ENST00000247226		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
Frame-shit	ENST00000323669	ENST00000394691		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000323669	ENST00000471182		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000323669	ENST00000484731		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000323669	ENST00000492928		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
Frame-shit	ENST00000395606	ENST00000247226		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
Frame-shit	ENST00000395606	ENST00000394691		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000395606	ENST00000471182		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000395606	ENST00000484731		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000395606	ENST00000492928		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
Frame-shit	ENST00000357758	ENST00000247226		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
Frame-shit	ENST00000357758	ENST00000394691		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000357758	ENST00000471182		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000357758	ENST00000484731		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
5CDS-intron	ENST00000357758	ENST00000492928		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
intron-3CDS	ENST00000555621	ENST00000247226		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
intron-3CDS	ENST00000555621	ENST00000394691		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
intron-intron	ENST00000555621	ENST00000471182		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
intron-intron	ENST00000555621	ENST00000484731		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
intron-intron	ENST00000555621	ENST00000492928		TCGA	LD	LUSC	TCGA-18-3411-01A	DDHD1	chr14	53539315	-	PLEKHG3	chr14	65203571	+
intron-3CDS	ENST00000371068	ENST00000229795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000371068	ENST00000229794		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000371068	ENST00000468133		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-intron	ENST00000371068	ENST00000310795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000491749	ENST00000229795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000491749	ENST00000229794		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000491749	ENST00000468133		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-intron	ENST00000491749	ENST00000310795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000433625	ENST00000229795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000433625	ENST00000229794		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000433625	ENST00000468133		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-intron	ENST00000433625	ENST00000310795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000538167	ENST00000229795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000538167	ENST00000229794		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000538167	ENST00000468133		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-intron	ENST00000538167	ENST00000310795		TCGA	LD	LUSC	TCGA-18-3411-01A	EFHC1	chr6	52227047	+	MAPK14	chr6	36070348	+
5UTR-3CDS	ENST00000442253	ENST00000229795		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
5UTR-3CDS	ENST00000442253	ENST00000229794		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
5UTR-3CDS	ENST00000442253	ENST00000468133		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
5UTR-intron	ENST00000442253	ENST00000310795		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000360726	ENST00000229795		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000360726	ENST00000229794		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000360726	ENST00000468133		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-intron	ENST00000360726	ENST00000310795		TCGA	LD	LUSC	TCGA-18-3411-01A	PAQR8	chr6	52227047	+	MAPK14	chr6	36070348	+
intron-3CDS	ENST00000378535	ENST00000232975		TCGA	LD	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486529	-
In-frame	ENST00000228280	ENST00000232975		TCGA	LD	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486529	-
In-frame	ENST00000347404	ENST00000232975		TCGA	LD	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486529	-
5UTR-3CDS	ENST00000357116	ENST00000232975		TCGA	LD	LUSC	TCGA-18-3414-01A	KITLG	chr12	88974041	-	TNNC1	chr3	52486529	-
5CDS-intron	ENST00000296543	ENST00000515137		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000296543	ENST00000265498		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000296543	ENST00000506797		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000398947	ENST00000515137		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000398947	ENST00000265498		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
5CDS-intron	ENST00000398947	ENST00000506797		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
3UTR-intron	ENST00000480277	ENST00000515137		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
3UTR-intron	ENST00000480277	ENST00000265498		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
3UTR-intron	ENST00000480277	ENST00000506797		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
intron-intron	ENST00000515576	ENST00000515137		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
intron-intron	ENST00000515576	ENST00000265498		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
intron-intron	ENST00000515576	ENST00000506797		TCGA	LD	LUSC	TCGA-18-3414-01A	NAA15	chr4	140265493	+	MGST2	chr4	140599697	+
5UTR-3UTR	ENST00000328771	ENST00000595501		TCGA	LD	LUSC	TCGA-18-3415-01A	DHX34	chr19	47852609	+	C5AR1	chr19	47795235	+
5UTR-intron	ENST00000328771	ENST00000355085		TCGA	LD	LUSC	TCGA-18-3415-01A	DHX34	chr19	47852609	+	C5AR1	chr19	47795235	+
intron-3UTR	ENST00000471451	ENST00000595501		TCGA	LD	LUSC	TCGA-18-3415-01A	DHX34	chr19	47852609	+	C5AR1	chr19	47795235	+
intron-intron	ENST00000471451	ENST00000355085		TCGA	LD	LUSC	TCGA-18-3415-01A	DHX34	chr19	47852609	+	C5AR1	chr19	47795235	+
5CDS-5UTR	ENST00000341942	ENST00000429084		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-5UTR	ENST00000341942	ENST00000359593		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-3UTR	ENST00000341942	ENST00000478501		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-5UTR	ENST00000341942	ENST00000421755		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-intron	ENST00000341942	ENST00000422582		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-5UTR	ENST00000441173	ENST00000429084		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-5UTR	ENST00000441173	ENST00000359593		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-3UTR	ENST00000441173	ENST00000478501		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-5UTR	ENST00000441173	ENST00000421755		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
5CDS-intron	ENST00000441173	ENST00000422582		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
3UTR-5UTR	ENST00000468582	ENST00000429084		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
3UTR-5UTR	ENST00000468582	ENST00000359593		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
3UTR-3UTR	ENST00000468582	ENST00000478501		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
3UTR-5UTR	ENST00000468582	ENST00000421755		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
3UTR-intron	ENST00000468582	ENST00000422582		TCGA	LD	LUSC	TCGA-18-3415-01A	LAMTOR4	chr7	99747202	+	AP4M1	chr7	99699331	+
Frame-shit	ENST00000445299	ENST00000327134		TCGA	LD	LUSC	TCGA-18-3415-01A	SENP5	chr3	196613565	+	PAK2	chr3	196554067	+
Frame-shit	ENST00000323460	ENST00000327134		TCGA	LD	LUSC	TCGA-18-3415-01A	SENP5	chr3	196613565	+	PAK2	chr3	196554067	+
intron-3CDS	ENST00000419026	ENST00000327134		TCGA	LD	LUSC	TCGA-18-3415-01A	SENP5	chr3	196613565	+	PAK2	chr3	196554067	+
intron-3CDS	ENST00000489744	ENST00000327134		TCGA	LD	LUSC	TCGA-18-3415-01A	SENP5	chr3	196613565	+	PAK2	chr3	196554067	+
5CDS-intron	ENST00000242848	ENST00000397063		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000242848	ENST00000397062		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000242848	ENST00000446151		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000242848	ENST00000464747		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000242848	ENST00000423513		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000378921	ENST00000397063		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000378921	ENST00000397062		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000378921	ENST00000446151		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000378921	ENST00000464747		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000378921	ENST00000423513		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000282007	ENST00000397063		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000282007	ENST00000397062		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000282007	ENST00000446151		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000282007	ENST00000464747		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
5CDS-intron	ENST00000282007	ENST00000423513		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000470308	ENST00000397063		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000470308	ENST00000397062		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000470308	ENST00000446151		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000470308	ENST00000464747		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
intron-intron	ENST00000470308	ENST00000423513		TCGA	LD	LUSC	TCGA-18-3415-01A	ZC3H13	chr13	46553948	-	NFE2L2	chr2	178148532	-
Frame-shit	ENST00000390268	ENST00000390238		TCGA	LD	LUSC	TCGA-18-3417-01A	IGKV2D-26	chr2	90025511	+	IGKJ5	chr2	89160112	-
intron-5UTR	ENST00000287916	ENST00000297205		TCGA	LD	LUSC	TCGA-18-3421-01A	CLDN12	chr7	90123744	+	STEAP1	chr7	89789072	+
intron-5UTR	ENST00000535571	ENST00000297205		TCGA	LD	LUSC	TCGA-18-3421-01A	CLDN12	chr7	90123744	+	STEAP1	chr7	89789072	+
intron-5UTR	ENST00000394605	ENST00000297205		TCGA	LD	LUSC	TCGA-18-3421-01A	CLDN12	chr7	90123744	+	STEAP1	chr7	89789072	+
intron-5UTR	ENST00000478752	ENST00000297205		TCGA	LD	LUSC	TCGA-18-3421-01A	CLDN12	chr7	90123744	+	STEAP1	chr7	89789072	+
5UTR-intron	ENST00000220763	ENST00000537875		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
5UTR-intron	ENST00000220763	ENST00000309791		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
5UTR-intron	ENST00000220763	ENST00000297848		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
5UTR-intron	ENST00000220763	ENST00000247781		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
5UTR-intron	ENST00000220763	ENST00000432943		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
intron-intron	ENST00000529551	ENST00000537875		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
intron-intron	ENST00000529551	ENST00000309791		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
intron-intron	ENST00000529551	ENST00000297848		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
intron-intron	ENST00000529551	ENST00000247781		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
intron-intron	ENST00000529551	ENST00000432943		TCGA	LD	LUSC	TCGA-18-3421-01A	CPQ	chr8	97657630	+	COL14A1	chr8	121379410	+
5CDS-intron	ENST00000081029	ENST00000545334		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000081029	ENST00000537927		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000081029	ENST00000318304		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000081029	ENST00000535047		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000081029	ENST00000542629		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000081029	ENST00000228425		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000081029	ENST00000541633		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000545334		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000537927		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000318304		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000535047		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000542629		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000228425		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
3UTR-intron	ENST00000538315	ENST00000541633		TCGA	LD	LUSC	TCGA-18-3421-01A	MRPS35	chr12	27890541	+	PPFIBP1	chr12	27840318	+
5CDS-intron	ENST00000531709	ENST00000311713		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000531709	ENST00000278856		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000531709	ENST00000529106		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000531709	ENST00000525239		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000531709	ENST00000525752		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000531709	ENST00000540620		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000294172	ENST00000311713		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000294172	ENST00000278856		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000294172	ENST00000529106		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000294172	ENST00000525239		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000294172	ENST00000525752		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000294172	ENST00000540620		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000532297	ENST00000311713		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000532297	ENST00000278856		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000532297	ENST00000529106		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000532297	ENST00000525239		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000532297	ENST00000525752		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000532297	ENST00000540620		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
intron-intron	ENST00000533048	ENST00000311713		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
intron-intron	ENST00000533048	ENST00000278856		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000533048	ENST00000529106		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000533048	ENST00000525239		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
intron-5UTR	ENST00000533048	ENST00000525752		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
intron-intron	ENST00000533048	ENST00000540620		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000531131	ENST00000311713		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000531131	ENST00000278856		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000531131	ENST00000529106		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000531131	ENST00000525239		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5UTR-5UTR	ENST00000531131	ENST00000525752		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5UTR-intron	ENST00000531131	ENST00000540620		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000439713	ENST00000311713		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000439713	ENST00000278856		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000439713	ENST00000529106		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000439713	ENST00000525239		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-5UTR	ENST00000439713	ENST00000525752		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
5CDS-intron	ENST00000439713	ENST00000540620		TCGA	LD	LUSC	TCGA-18-3421-01A	NXF1	chr11	62572801	-	WDR74	chr11	62607131	-
In-frame	ENST00000259460	ENST00000521381		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000259460	ENST00000521657		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000259460	ENST00000517643		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000259460	ENST00000274335		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000259460	ENST00000396611		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000259460	ENST00000320694		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000259460	ENST00000336483		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000259460	ENST00000523872		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000394125	ENST00000521381		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000394125	ENST00000521657		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394125	ENST00000517643		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394125	ENST00000274335		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394125	ENST00000396611		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394125	ENST00000320694		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394125	ENST00000336483		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394125	ENST00000523872		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000373544	ENST00000521381		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000373544	ENST00000521657		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373544	ENST00000517643		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373544	ENST00000274335		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373544	ENST00000396611		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373544	ENST00000320694		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373544	ENST00000336483		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373544	ENST00000523872		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000394124	ENST00000521381		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000394124	ENST00000521657		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394124	ENST00000517643		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394124	ENST00000274335		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394124	ENST00000396611		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394124	ENST00000320694		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394124	ENST00000336483		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000394124	ENST00000523872		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000373538	ENST00000521381		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000373538	ENST00000521657		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373538	ENST00000517643		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373538	ENST00000274335		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373538	ENST00000396611		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373538	ENST00000320694		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373538	ENST00000336483		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
5CDS-intron	ENST00000373538	ENST00000523872		TCGA	LD	LUSC	TCGA-18-3421-01A	RABEPK	chr9	127970000	+	PIK3R1	chr5	67569218	+
In-frame	ENST00000394077	ENST00000316549		TCGA	LD	LUSC	TCGA-18-3421-01A	RPL24	chr3	101401273	-	SLC9A9	chr3	143214290	-
5CDS-intron	ENST00000394077	ENST00000498717		TCGA	LD	LUSC	TCGA-18-3421-01A	RPL24	chr3	101401273	-	SLC9A9	chr3	143214290	-
intron-3CDS	ENST00000495401	ENST00000316549		TCGA	LD	LUSC	TCGA-18-3421-01A	RPL24	chr3	101401273	-	SLC9A9	chr3	143214290	-
intron-intron	ENST00000495401	ENST00000498717		TCGA	LD	LUSC	TCGA-18-3421-01A	RPL24	chr3	101401273	-	SLC9A9	chr3	143214290	-
intron-3CDS	ENST00000469605	ENST00000316549		TCGA	LD	LUSC	TCGA-18-3421-01A	RPL24	chr3	101401273	-	SLC9A9	chr3	143214290	-
intron-intron	ENST00000469605	ENST00000498717		TCGA	LD	LUSC	TCGA-18-3421-01A	RPL24	chr3	101401273	-	SLC9A9	chr3	143214290	-
intron-5UTR	ENST00000171887	ENST00000188790		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-intron	ENST00000171887	ENST00000443424		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000171887	ENST00000493182		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000419504	ENST00000188790		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-intron	ENST00000419504	ENST00000443424		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000419504	ENST00000493182		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000430930	ENST00000188790		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-intron	ENST00000430930	ENST00000443424		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000430930	ENST00000493182		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000310858	ENST00000188790		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-intron	ENST00000310858	ENST00000443424		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000310858	ENST00000493182		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000480665	ENST00000188790		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-intron	ENST00000480665	ENST00000443424		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
intron-5UTR	ENST00000480665	ENST00000493182		TCGA	LD	LUSC	TCGA-18-3421-01A	TNS1	chr2	218843488	-	FAP	chr2	163100010	-
In-frame	ENST00000304621	ENST00000261038		TCGA	LD	LUSC	TCGA-18-3421-01A	TTC39C	chr18	21649235	+	DIRC2	chr3	122591262	+
In-frame	ENST00000317571	ENST00000261038		TCGA	LD	LUSC	TCGA-18-3421-01A	TTC39C	chr18	21649235	+	DIRC2	chr3	122591262	+
intron-3CDS	ENST00000578150	ENST00000261038		TCGA	LD	LUSC	TCGA-18-3421-01A	TTC39C	chr18	21649235	+	DIRC2	chr3	122591262	+
intron-3CDS	ENST00000584250	ENST00000261038		TCGA	LD	LUSC	TCGA-18-3421-01A	TTC39C	chr18	21649235	+	DIRC2	chr3	122591262	+
intron-3CDS	ENST00000577185	ENST00000261038		TCGA	LD	LUSC	TCGA-18-3421-01A	TTC39C	chr18	21649235	+	DIRC2	chr3	122591262	+
intron-3CDS	ENST00000540918	ENST00000261038		TCGA	LD	LUSC	TCGA-18-3421-01A	TTC39C	chr18	21649235	+	DIRC2	chr3	122591262	+
Frame-shit	ENST00000220509	ENST00000570108		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
Frame-shit	ENST00000220509	ENST00000564258		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
In-frame	ENST00000220509	ENST00000355341		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
In-frame	ENST00000220509	ENST00000336455		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
In-frame	ENST00000220509	ENST00000299173		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
5CDS-intron	ENST00000220509	ENST00000563530		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
Frame-shit	ENST00000558474	ENST00000570108		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
Frame-shit	ENST00000558474	ENST00000564258		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
In-frame	ENST00000558474	ENST00000355341		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
In-frame	ENST00000558474	ENST00000336455		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
In-frame	ENST00000558474	ENST00000299173		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
5CDS-intron	ENST00000558474	ENST00000563530		TCGA	LD	LUSC	TCGA-18-3421-01A	VPS18	chr15	41188277	+	ZFYVE19	chr15	41106346	+
Frame-shit	ENST00000419234	ENST00000377673		TCGA	LD	LUSC	TCGA-18-4083-01A	BRAP	chr12	112103443	-	FAM216A	chr12	110927824	+
Frame-shit	ENST00000539060	ENST00000377673		TCGA	LD	LUSC	TCGA-18-4083-01A	BRAP	chr12	112103443	-	FAM216A	chr12	110927824	+
Frame-shit	ENST00000327551	ENST00000377673		TCGA	LD	LUSC	TCGA-18-4083-01A	BRAP	chr12	112103443	-	FAM216A	chr12	110927824	+
5CDS-5UTR	ENST00000342315	ENST00000377560		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000342315	ENST00000430131		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000342315	ENST00000550722		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-intron	ENST00000342315	ENST00000549141		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000392583	ENST00000377560		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000392583	ENST00000430131		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000392583	ENST00000550722		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-intron	ENST00000392583	ENST00000549141		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000449768	ENST00000377560		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000449768	ENST00000430131		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-5UTR	ENST00000449768	ENST00000550722		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
5CDS-intron	ENST00000449768	ENST00000549141		TCGA	LD	LUSC	TCGA-18-4083-01A	OAS2	chr12	113416590	+	HECTD4	chr12	112757546	-
Frame-shit	ENST00000574876	ENST00000293780		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000574876	ENST00000575637		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
Frame-shit	ENST00000572293	ENST00000293780		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000572293	ENST00000575637		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
Frame-shit	ENST00000269230	ENST00000293780		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000269230	ENST00000575637		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
Frame-shit	ENST00000301396	ENST00000293780		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000301396	ENST00000575637		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5UTR-3CDS	ENST00000436683	ENST00000293780		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5UTR-intron	ENST00000436683	ENST00000575637		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5UTR-3CDS	ENST00000570823	ENST00000293780		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5UTR-intron	ENST00000570823	ENST00000575637		TCGA	LD	LUSC	TCGA-18-4083-01A	PELP1	chr17	4607158	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000357674	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000357674	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000314062	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000314062	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000346964	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000346964	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000419354	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000419354	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
intron-intron	ENST00000452595	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
intron-intron	ENST00000452595	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000422288	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000422288	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000448528	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000448528	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
intron-intron	ENST00000443183	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
intron-intron	ENST00000443183	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000450955	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000450955	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000392382	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5CDS-intron	ENST00000392382	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5UTR-intron	ENST00000485409	ENST00000474034		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
5UTR-intron	ENST00000485409	ENST00000282928		TCGA	LD	LUSC	TCGA-18-4086-01A	DLG1	chr3	197009550	-	ZIC1	chr3	147131141	+
In-frame	ENST00000381844	ENST00000310823		TCGA	LD	LUSC	TCGA-18-4086-01A	YWHAQ	chr2	9770288	-	ADAM17	chr2	9650260	-
5CDS-intron	ENST00000381844	ENST00000497134		TCGA	LD	LUSC	TCGA-18-4086-01A	YWHAQ	chr2	9770288	-	ADAM17	chr2	9650260	-
Frame-shit	ENST00000238081	ENST00000310823		TCGA	LD	LUSC	TCGA-18-4086-01A	YWHAQ	chr2	9770288	-	ADAM17	chr2	9650260	-
5CDS-intron	ENST00000238081	ENST00000497134		TCGA	LD	LUSC	TCGA-18-4086-01A	YWHAQ	chr2	9770288	-	ADAM17	chr2	9650260	-
intron-3CDS	ENST00000474715	ENST00000310823		TCGA	LD	LUSC	TCGA-18-4086-01A	YWHAQ	chr2	9770288	-	ADAM17	chr2	9650260	-
intron-intron	ENST00000474715	ENST00000497134		TCGA	LD	LUSC	TCGA-18-4086-01A	YWHAQ	chr2	9770288	-	ADAM17	chr2	9650260	-
intron-5UTR	ENST00000557515	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000557515	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000338631	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000357481	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000605057	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000457657	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000262710	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
intron-5UTR	ENST00000397341	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5CDS-5UTR	ENST00000555053	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000490506		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000206474		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000554446		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000541587		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000397409		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000342454		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000347758		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000555367		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
5UTR-5UTR	ENST00000555352	ENST00000555986		TCGA	LD	LUSC	TCGA-18-4721-01A	ACIN1	chr14	23547360	-	HAUS4	chr14	23424385	-
In-frame	ENST00000228799	ENST00000448120		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
In-frame	ENST00000228799	ENST00000397132		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
5UTR-3CDS	ENST00000419778	ENST00000448120		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
5UTR-3CDS	ENST00000419778	ENST00000397132		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
5UTR-3CDS	ENST00000542548	ENST00000448120		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
5UTR-3CDS	ENST00000542548	ENST00000397132		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
intron-3CDS	ENST00000545509	ENST00000448120		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
intron-3CDS	ENST00000545509	ENST00000397132		TCGA	LD	LUSC	TCGA-18-4721-01A	ITFG2	chr12	2922022	+	TULP3	chr12	3046797	+
5UTR-intron	ENST00000337959	ENST00000401850		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-intron	ENST00000337959	ENST00000249005		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-intron	ENST00000337959	ENST00000381278		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-5UTR	ENST00000337959	ENST00000465765		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-intron	ENST00000263246	ENST00000401850		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-intron	ENST00000263246	ENST00000249005		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-intron	ENST00000263246	ENST00000381278		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5UTR-5UTR	ENST00000263246	ENST00000465765		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000407585	ENST00000401850		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000407585	ENST00000249005		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000407585	ENST00000381278		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-5UTR	ENST00000407585	ENST00000465765		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000403744	ENST00000401850		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000403744	ENST00000249005		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000403744	ENST00000381278		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-5UTR	ENST00000403744	ENST00000465765		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000402229	ENST00000401850		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000402229	ENST00000249005		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-intron	ENST00000402229	ENST00000381278		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
intron-5UTR	ENST00000402229	ENST00000465765		TCGA	LD	LUSC	TCGA-18-5595-01A	PACSIN2	chr22	43411027	-	A4GALT	chr22	43091637	-
5CDS-5UTR	ENST00000209873	ENST00000267082		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000209873	ENST00000422257		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000209873	ENST00000338737		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000209873	ENST00000550743		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000394384	ENST00000267082		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000394384	ENST00000422257		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000394384	ENST00000338737		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000394384	ENST00000550743		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000550286	ENST00000267082		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000550286	ENST00000422257		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000550286	ENST00000338737		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5CDS-5UTR	ENST00000550286	ENST00000550743		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5UTR-5UTR	ENST00000549983	ENST00000267082		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5UTR-5UTR	ENST00000549983	ENST00000422257		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5UTR-5UTR	ENST00000549983	ENST00000338737		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
5UTR-5UTR	ENST00000549983	ENST00000550743		TCGA	LD	LUSC	TCGA-21-1070-01A	AAAS	chr12	53708082	-	ITGB7	chr12	53594230	-
Frame-shit	ENST00000289968	ENST00000383018		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
5CDS-intron	ENST00000289968	ENST00000493672		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
Frame-shit	ENST00000441763	ENST00000383018		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
5CDS-intron	ENST00000441763	ENST00000493672		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
Frame-shit	ENST00000303665	ENST00000383018		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
5CDS-intron	ENST00000303665	ENST00000493672		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
5UTR-3CDS	ENST00000575975	ENST00000383018		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
5UTR-intron	ENST00000575975	ENST00000493672		TCGA	LD	LUSC	TCGA-21-1070-01A	ARHGAP17	chr16	24975518	-	SNRNP25	chr16	106539	+
In-frame	ENST00000354764	ENST00000409261		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000354764	ENST00000409213		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000354764	ENST00000405974		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000354764	ENST00000317721		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
5CDS-intron	ENST00000354764	ENST00000473859		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000409475	ENST00000409261		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000409475	ENST00000409213		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000409475	ENST00000405974		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
In-frame	ENST00000409475	ENST00000317721		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
5CDS-intron	ENST00000409475	ENST00000473859		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000409188	ENST00000409261		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000409188	ENST00000409213		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000409188	ENST00000405974		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000409188	ENST00000317721		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-intron	ENST00000409188	ENST00000473859		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000485830	ENST00000409261		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000485830	ENST00000409213		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000485830	ENST00000405974		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-3CDS	ENST00000485830	ENST00000317721		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
intron-intron	ENST00000485830	ENST00000473859		TCGA	LD	LUSC	TCGA-21-1070-01A	PGAP1	chr2	197791194	-	NCKAP5	chr2	133430878	-
5CDS-intron	ENST00000279550	ENST00000326765		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	APOLD1	chr12	12982357	+
5CDS-intron	ENST00000279550	ENST00000356591		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	APOLD1	chr12	12982357	+
5CDS-intron	ENST00000228251	ENST00000326765		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	APOLD1	chr12	12982357	+
5CDS-intron	ENST00000228251	ENST00000356591		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	APOLD1	chr12	12982357	+
intron-intron	ENST00000546164	ENST00000326765		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	APOLD1	chr12	12982357	+
intron-intron	ENST00000546164	ENST00000356591		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	APOLD1	chr12	12982357	+
Frame-shit	ENST00000279550	ENST00000352940		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
Frame-shit	ENST00000279550	ENST00000358007		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
5CDS-intron	ENST00000279550	ENST00000392155		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
Frame-shit	ENST00000228251	ENST00000352940		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
Frame-shit	ENST00000228251	ENST00000358007		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
5CDS-intron	ENST00000228251	ENST00000392155		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
intron-3CDS	ENST00000546164	ENST00000352940		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
intron-3CDS	ENST00000546164	ENST00000358007		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
intron-intron	ENST00000546164	ENST00000392155		TCGA	LD	LUSC	TCGA-21-1070-01A	YBX3	chr12	10868293	-	DDX47	chr12	12982357	+
5UTR-3CDS	ENST00000493559	ENST00000426959		TCGA	LD	LUSC	TCGA-21-1071-01A	FBXW2	chr9	123533626	-	MEGF9	chr9	123421853	-
5UTR-3CDS	ENST00000493559	ENST00000373930		TCGA	LD	LUSC	TCGA-21-1071-01A	FBXW2	chr9	123533626	-	MEGF9	chr9	123421853	-
In-frame	ENST00000608872	ENST00000426959		TCGA	LD	LUSC	TCGA-21-1071-01A	FBXW2	chr9	123533626	-	MEGF9	chr9	123421853	-
In-frame	ENST00000608872	ENST00000373930		TCGA	LD	LUSC	TCGA-21-1071-01A	FBXW2	chr9	123533626	-	MEGF9	chr9	123421853	-
In-frame	ENST00000340778	ENST00000426959		TCGA	LD	LUSC	TCGA-21-1071-01A	FBXW2	chr9	123533626	-	MEGF9	chr9	123421853	-
In-frame	ENST00000340778	ENST00000373930		TCGA	LD	LUSC	TCGA-21-1071-01A	FBXW2	chr9	123533626	-	MEGF9	chr9	123421853	-
In-frame	ENST00000242810	ENST00000305768		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000242810	ENST00000590597		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000242810	ENST00000591863		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
In-frame	ENST00000454652	ENST00000305768		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000454652	ENST00000590597		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000454652	ENST00000591863		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
In-frame	ENST00000476808	ENST00000305768		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000476808	ENST00000590597		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000476808	ENST00000591863		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
intron-3CDS	ENST00000461813	ENST00000305768		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
intron-intron	ENST00000461813	ENST00000590597		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
intron-intron	ENST00000461813	ENST00000591863		TCGA	LD	LUSC	TCGA-21-1071-01A	KLHL24	chr3	183369064	+	CEP89	chr19	33392318	-
5UTR-3CDS	ENST00000305135	ENST00000296252		TCGA	LD	LUSC	TCGA-21-1071-01A	YEATS2	chr3	183415781	+	LIPH	chr3	185252920	-
5UTR-3CDS	ENST00000305135	ENST00000424591		TCGA	LD	LUSC	TCGA-21-1071-01A	YEATS2	chr3	183415781	+	LIPH	chr3	185252920	-
5UTR-3CDS	ENST00000389032	ENST00000416383		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-3CDS	ENST00000389032	ENST00000298876		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-3CDS	ENST00000389032	ENST00000535986		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-intron	ENST00000389032	ENST00000538647		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-3CDS	ENST00000539577	ENST00000416383		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-3CDS	ENST00000539577	ENST00000298876		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-3CDS	ENST00000539577	ENST00000535986		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
5UTR-intron	ENST00000539577	ENST00000538647		TCGA	LD	LUSC	TCGA-21-1072-01A	STK38L	chr12	27397265	+	SMCO2	chr12	27627719	+
In-frame	ENST00000369061	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000369061	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000369061	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000357555	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000357555	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000357555	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000358487	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000358487	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000358487	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000356226	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000356226	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000356226	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000369060	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000369060	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000369060	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000369059	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000369059	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000369059	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000346997	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000346997	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000346997	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000457416	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000457416	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000457416	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000351936	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000351936	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000351936	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000360144	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000360144	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000360144	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000369056	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000369056	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
In-frame	ENST00000369056	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
intron-3CDS	ENST00000490349	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
intron-3CDS	ENST00000490349	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
intron-3CDS	ENST00000490349	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
intron-3CDS	ENST00000359354	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
intron-3CDS	ENST00000359354	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
intron-3CDS	ENST00000359354	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000478859	ENST00000323963		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000478859	ENST00000440191		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
Frame-shit	ENST00000478859	ENST00000356531		TCGA	LD	LUSC	TCGA-21-1075-01A	FGFR2	chr10	123243212	-	EIF4A2	chr3	186504916	+
5UTR-3CDS	ENST00000502271	ENST00000361377		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000396954		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000450852		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000510818		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000508922		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000582677		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000584946		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
5UTR-5UTR	ENST00000502271	ENST00000527216		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-3CDS	ENST00000504924	ENST00000361377		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000396954		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000450852		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000510818		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000508922		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000582677		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000584946		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000504924	ENST00000527216		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-3CDS	ENST00000510591	ENST00000361377		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000396954		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000450852		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000510818		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000508922		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000582677		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000584946		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000510591	ENST00000527216		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-3CDS	ENST00000507646	ENST00000361377		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000396954		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000450852		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000510818		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000508922		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000582677		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000584946		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
intron-5UTR	ENST00000507646	ENST00000527216		TCGA	LD	LUSC	TCGA-21-1079-01A	ARL15	chr5	53603718	-	MOCS2	chr5	52404473	-
Frame-shit	ENST00000284878	ENST00000265018		TCGA	LD	LUSC	TCGA-21-1081-01A	CXADR	chr21	18937929	+	FAM184B	chr4	17666282	-
In-frame	ENST00000400166	ENST00000265018		TCGA	LD	LUSC	TCGA-21-1081-01A	CXADR	chr21	18937929	+	FAM184B	chr4	17666282	-
intron-3CDS	ENST00000356275	ENST00000265018		TCGA	LD	LUSC	TCGA-21-1081-01A	CXADR	chr21	18937929	+	FAM184B	chr4	17666282	-
In-frame	ENST00000400165	ENST00000265018		TCGA	LD	LUSC	TCGA-21-1081-01A	CXADR	chr21	18937929	+	FAM184B	chr4	17666282	-
In-frame	ENST00000306618	ENST00000265018		TCGA	LD	LUSC	TCGA-21-1081-01A	CXADR	chr21	18937929	+	FAM184B	chr4	17666282	-
In-frame	ENST00000400169	ENST00000265018		TCGA	LD	LUSC	TCGA-21-1081-01A	CXADR	chr21	18937929	+	FAM184B	chr4	17666282	-
Frame-shit	ENST00000434271	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
Frame-shit	ENST00000353047	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
Frame-shit	ENST00000530640	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
In-frame	ENST00000531089	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
In-frame	ENST00000453527	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
intron-3CDS	ENST00000415599	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
In-frame	ENST00000345125	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
Frame-shit	ENST00000533455	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
In-frame	ENST00000534510	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
5UTR-3CDS	ENST00000525076	ENST00000382209		TCGA	LD	LUSC	TCGA-21-1082-01A	CTSB	chr8	11706555	-	DEFB136	chr8	11831627	-
In-frame	ENST00000504830	ENST00000340253		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
In-frame	ENST00000504830	ENST00000296701		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
In-frame	ENST00000504830	ENST00000394370		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5CDS-intron	ENST00000504830	ENST00000509699		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5CDS-intron	ENST00000504830	ENST00000513826		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
In-frame	ENST00000352040	ENST00000340253		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
In-frame	ENST00000352040	ENST00000296701		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
In-frame	ENST00000352040	ENST00000394370		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5CDS-intron	ENST00000352040	ENST00000509699		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5CDS-intron	ENST00000352040	ENST00000513826		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5UTR-3CDS	ENST00000504582	ENST00000340253		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5UTR-3CDS	ENST00000504582	ENST00000296701		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5UTR-3CDS	ENST00000504582	ENST00000394370		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5UTR-intron	ENST00000504582	ENST00000509699		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5UTR-intron	ENST00000504582	ENST00000513826		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
intron-3CDS	ENST00000515401	ENST00000340253		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
intron-3CDS	ENST00000515401	ENST00000296701		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
intron-3CDS	ENST00000515401	ENST00000394370		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
intron-intron	ENST00000515401	ENST00000509699		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
intron-intron	ENST00000515401	ENST00000513826		TCGA	LD	LUSC	TCGA-21-5782-01A	ADAMTS12	chr5	33751509	-	FBXO38	chr5	147812987	+
5CDS-intron	ENST00000265000	ENST00000504618		TCGA	LD	LUSC	TCGA-21-5783-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000265000	ENST00000296504		TCGA	LD	LUSC	TCGA-21-5783-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000512285	ENST00000504618		TCGA	LD	LUSC	TCGA-21-5783-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
5CDS-intron	ENST00000512285	ENST00000296504		TCGA	LD	LUSC	TCGA-21-5783-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
intron-intron	ENST00000502407	ENST00000504618		TCGA	LD	LUSC	TCGA-21-5783-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
intron-intron	ENST00000502407	ENST00000296504		TCGA	LD	LUSC	TCGA-21-5783-01A	GALNT7	chr4	174090112	+	SAP30	chr4	174294541	+
In-frame	ENST00000273980	ENST00000265174		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5CDS-intron	ENST00000273980	ENST00000511304		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
Frame-shit	ENST00000432496	ENST00000265174		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5CDS-intron	ENST00000432496	ENST00000511304		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
Frame-shit	ENST00000361687	ENST00000265174		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5CDS-intron	ENST00000361687	ENST00000511304		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
Frame-shit	ENST00000394706	ENST00000265174		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5CDS-intron	ENST00000394706	ENST00000511304		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
Frame-shit	ENST00000394708	ENST00000265174		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5CDS-intron	ENST00000394708	ENST00000511304		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5UTR-3CDS	ENST00000514689	ENST00000265174		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
5UTR-intron	ENST00000514689	ENST00000511304		TCGA	LD	LUSC	TCGA-21-5783-01A	TBCK	chr4	107092252	-	PAPSS1	chr4	108553016	-
In-frame	ENST00000337859	ENST00000304698		TCGA	LD	LUSC	TCGA-21-5783-01A	ZC3H15	chr2	187366152	+	FAM171B	chr2	187604955	+
intron-3CDS	ENST00000544130	ENST00000304698		TCGA	LD	LUSC	TCGA-21-5783-01A	ZC3H15	chr2	187366152	+	FAM171B	chr2	187604955	+
3UTR-3CDS	ENST00000468120	ENST00000304698		TCGA	LD	LUSC	TCGA-21-5783-01A	ZC3H15	chr2	187366152	+	FAM171B	chr2	187604955	+
intron-3CDS	ENST00000258439	ENST00000264972		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3UTR	ENST00000258439	ENST00000463643		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3UTR	ENST00000258439	ENST00000442208		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-intron	ENST00000258439	ENST00000451498		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3CDS	ENST00000432959	ENST00000264972		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3UTR	ENST00000432959	ENST00000463643		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3UTR	ENST00000432959	ENST00000442208		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-intron	ENST00000432959	ENST00000451498		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3CDS	ENST00000435268	ENST00000264972		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3UTR	ENST00000435268	ENST00000463643		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-3UTR	ENST00000435268	ENST00000442208		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
intron-intron	ENST00000435268	ENST00000451498		TCGA	LD	LUSC	TCGA-21-5786-01A	TMEM127	chr2	96919588	-	ZAP70	chr2	98349346	+
5CDS-intron	ENST00000505658	ENST00000006658		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000505658	ENST00000356488		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000505658	ENST00000393244		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000505658	ENST00000511937		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000393227	ENST00000006658		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000393227	ENST00000356488		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000393227	ENST00000393244		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000393227	ENST00000511937		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000311571	ENST00000006658		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000311571	ENST00000356488		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000311571	ENST00000393244		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000311571	ENST00000511937		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000240304	ENST00000006658		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000240304	ENST00000356488		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000240304	ENST00000393244		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5CDS-intron	ENST00000240304	ENST00000511937		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5UTR-intron	ENST00000544170	ENST00000006658		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5UTR-intron	ENST00000544170	ENST00000356488		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5UTR-intron	ENST00000544170	ENST00000393244		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
5UTR-intron	ENST00000544170	ENST00000511937		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
intron-intron	ENST00000503798	ENST00000006658		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
intron-intron	ENST00000503798	ENST00000356488		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
intron-intron	ENST00000503798	ENST00000393244		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
intron-intron	ENST00000503798	ENST00000511937		TCGA	LD	LUSC	TCGA-21-A5DI-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48624429	+
intron-3CDS	ENST00000426595	ENST00000275605		TCGA	LD	LUSC	TCGA-21-A5DI-01A	MRPS17	chr7	56019623	+	PSPH	chr7	56082864	-
intron-3CDS	ENST00000426595	ENST00000395471		TCGA	LD	LUSC	TCGA-21-A5DI-01A	MRPS17	chr7	56019623	+	PSPH	chr7	56082864	-
intron-5UTR	ENST00000426595	ENST00000459834		TCGA	LD	LUSC	TCGA-21-A5DI-01A	MRPS17	chr7	56019623	+	PSPH	chr7	56082864	-
5UTR-3CDS	ENST00000285298	ENST00000275605		TCGA	LD	LUSC	TCGA-21-A5DI-01A	MRPS17	chr7	56019623	+	PSPH	chr7	56082864	-
5UTR-3CDS	ENST00000285298	ENST00000395471		TCGA	LD	LUSC	TCGA-21-A5DI-01A	MRPS17	chr7	56019623	+	PSPH	chr7	56082864	-
5UTR-5UTR	ENST00000285298	ENST00000459834		TCGA	LD	LUSC	TCGA-21-A5DI-01A	MRPS17	chr7	56019623	+	PSPH	chr7	56082864	-
Frame-shit	ENST00000274192	ENST00000586178		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
Frame-shit	ENST00000274192	ENST00000415868		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000274192	ENST00000376381		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000274192	ENST00000593259		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
Frame-shit	ENST00000537411	ENST00000586178		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
Frame-shit	ENST00000537411	ENST00000415868		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000537411	ENST00000376381		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000537411	ENST00000593259		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
3UTR-3CDS	ENST00000504286	ENST00000586178		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
3UTR-3CDS	ENST00000504286	ENST00000415868		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
3UTR-intron	ENST00000504286	ENST00000376381		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
3UTR-intron	ENST00000504286	ENST00000593259		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
Frame-shit	ENST00000538824	ENST00000586178		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
Frame-shit	ENST00000538824	ENST00000415868		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000538824	ENST00000376381		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000538824	ENST00000593259		TCGA	LD	LUSC	TCGA-21-A5DI-01A	SRD5A1	chr5	6633982	+	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000374706	ENST00000321660		TCGA	LD	LUSC	TCGA-22-0940-01A	CCNY	chr10	35626135	+	GJD4	chr10	35896506	+
5UTR-3CDS	ENST00000265375	ENST00000321660		TCGA	LD	LUSC	TCGA-22-0940-01A	CCNY	chr10	35626135	+	GJD4	chr10	35896506	+
Frame-shit	ENST00000339497	ENST00000321660		TCGA	LD	LUSC	TCGA-22-0940-01A	CCNY	chr10	35626135	+	GJD4	chr10	35896506	+
Frame-shit	ENST00000374704	ENST00000321660		TCGA	LD	LUSC	TCGA-22-0940-01A	CCNY	chr10	35626135	+	GJD4	chr10	35896506	+
3UTR-3CDS	ENST00000492478	ENST00000321660		TCGA	LD	LUSC	TCGA-22-0940-01A	CCNY	chr10	35626135	+	GJD4	chr10	35896506	+
Frame-shit	ENST00000305747	ENST00000375363		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
In-frame	ENST00000305747	ENST00000429379		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
In-frame	ENST00000305747	ENST00000421979		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
5CDS-3UTR	ENST00000305747	ENST00000461586		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
Frame-shit	ENST00000392687	ENST00000375363		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
In-frame	ENST00000392687	ENST00000429379		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
In-frame	ENST00000392687	ENST00000421979		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
5CDS-3UTR	ENST00000392687	ENST00000461586		TCGA	LD	LUSC	TCGA-22-0940-01A	CERS6	chr2	169574488	+	G6PC2	chr2	169764078	+
intron-3CDS	ENST00000340635	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000340635	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000340635	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000340635	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000340635	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000340635	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
In-frame	ENST00000360047	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
In-frame	ENST00000360047	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
In-frame	ENST00000360047	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
In-frame	ENST00000360047	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000360047	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
5CDS-intron	ENST00000360047	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000507116	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000507116	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000507116	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000507116	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000507116	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000507116	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502484	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000502484	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000502484	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000546160	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000546160	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000546160	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502575	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502575	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502575	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000502575	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000502575	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000502575	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000358923	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000358923	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000358923	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503258	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503258	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503258	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000405755	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000405755	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000405755	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000317118	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000317118	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000317118	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000515393		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000429576		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000312216		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000503947	ENST00000505208		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503947	ENST00000514040		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-intron	ENST00000503947	ENST00000505078		TCGA	LD	LUSC	TCGA-22-0940-01A	PDE4D	chr5	58882155	-	MCTP1	chr5	94353188	-
intron-3CDS	ENST00000426402	ENST00000390334		TCGA	LD	LUSC	TCGA-22-0940-01A	TRGV2	chr7	38402476	-	TRGJP2	chr7	38295988	-
Frame-shit	ENST00000432306	ENST00000534894		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000536810		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000545257		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000355995		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000543371		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000355717		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000538897		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000349937		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000369397		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000352065		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000432306	ENST00000369395		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-5UTR	ENST00000432306	ENST00000542695		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-intron	ENST00000432306	ENST00000369389		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-intron	ENST00000432306	ENST00000369386		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-intron	ENST00000432306	ENST00000466338		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000534894		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000536810		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000545257		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000355995		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000543371		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000355717		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000538897		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000349937		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000369397		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000352065		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000393077	ENST00000369395		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-5UTR	ENST00000393077	ENST00000542695		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-intron	ENST00000393077	ENST00000369389		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-intron	ENST00000393077	ENST00000369386		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
5CDS-intron	ENST00000393077	ENST00000466338		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000534894		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000536810		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000545257		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000355995		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000543371		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000355717		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000538897		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000349937		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000369397		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000352065		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-3CDS	ENST00000483122	ENST00000369395		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-5UTR	ENST00000483122	ENST00000542695		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-intron	ENST00000483122	ENST00000369389		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-intron	ENST00000483122	ENST00000369386		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
intron-intron	ENST00000483122	ENST00000466338		TCGA	LD	LUSC	TCGA-22-0940-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114799784	+
Frame-shit	ENST00000584601	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000584601	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000584601	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000584601	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000584601	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000406381	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000406381	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000406381	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000406381	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000406381	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000541774	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000541774	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000541774	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000541774	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000541774	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000445658	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000445658	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000445658	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000445658	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000445658	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000540147	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000540147	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000540147	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000540147	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000540147	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000584450	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000584450	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000584450	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000584450	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000584450	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000269571	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000269571	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000269571	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
In-frame	ENST00000269571	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000269571	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000578199	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000578199	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000578199	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000578199	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000578199	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000540042	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000540042	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000540042	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000540042	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000540042	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	LD	LUSC	TCGA-22-0944-01A	ERBB2	chr17	37876087	+	PPP1R1B	chr17	37792069	+
Frame-shit	ENST00000319380	ENST00000446526		TCGA	LD	LUSC	TCGA-22-0944-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
Frame-shit	ENST00000319380	ENST00000324684		TCGA	LD	LUSC	TCGA-22-0944-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
5CDS-intron	ENST00000319380	ENST00000588364		TCGA	LD	LUSC	TCGA-22-0944-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000587581	ENST00000446526		TCGA	LD	LUSC	TCGA-22-0944-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000587581	ENST00000324684		TCGA	LD	LUSC	TCGA-22-0944-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-intron	ENST00000587581	ENST00000588364		TCGA	LD	LUSC	TCGA-22-0944-01A	UBE2O	chr17	74448807	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000597652	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
intron-intron	ENST00000597652	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000596604	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000596604	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000597342	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000597342	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000597832	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000597832	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000595295	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000595295	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000600634	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000600634	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000435989	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000435989	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000597807	ENST00000270459		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
5CDS-intron	ENST00000597807	ENST00000587279		TCGA	LD	LUSC	TCGA-22-1002-01A	ZNF814	chr19	58400135	-	ZNF787	chr19	56600461	-
In-frame	ENST00000252699	ENST00000409235		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
In-frame	ENST00000252699	ENST00000410018		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
In-frame	ENST00000252699	ENST00000215069		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
5CDS-intron	ENST00000252699	ENST00000467739		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000424234	ENST00000409235		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000424234	ENST00000410018		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000424234	ENST00000215069		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-intron	ENST00000424234	ENST00000467739		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000390009	ENST00000409235		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000390009	ENST00000410018		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000390009	ENST00000215069		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-intron	ENST00000390009	ENST00000467739		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000497637	ENST00000409235		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000497637	ENST00000410018		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-3CDS	ENST00000497637	ENST00000215069		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
intron-intron	ENST00000497637	ENST00000467739		TCGA	LD	LUSC	TCGA-22-1005-01A	ACTN4	chr19	39200116	+	CATSPERG	chr19	38848918	+
5CDS-5UTR	ENST00000316157	ENST00000316048		TCGA	LD	LUSC	TCGA-22-1012-01A	LARP4B	chr10	882343	-	SMCO3	chr12	14959630	-
intron-5UTR	ENST00000469487	ENST00000316048		TCGA	LD	LUSC	TCGA-22-1012-01A	LARP4B	chr10	882343	-	SMCO3	chr12	14959630	-
intron-5UTR	ENST00000504387	ENST00000472091		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
intron-5UTR	ENST00000504387	ENST00000542862		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
5CDS-5UTR	ENST00000379446	ENST00000472091		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
5CDS-5UTR	ENST00000379446	ENST00000542862		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
5CDS-5UTR	ENST00000379433	ENST00000472091		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
5CDS-5UTR	ENST00000379433	ENST00000542862		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
intron-5UTR	ENST00000508800	ENST00000472091		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
intron-5UTR	ENST00000508800	ENST00000542862		TCGA	LD	LUSC	TCGA-22-1012-01A	NEDD9	chr6	11232737	-	ERVFRD-1	chr6	11105863	-
In-frame	ENST00000263284	ENST00000012443		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
5CDS-intron	ENST00000263284	ENST00000391919		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
In-frame	ENST00000595358	ENST00000012443		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
5CDS-intron	ENST00000595358	ENST00000391919		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
In-frame	ENST00000536603	ENST00000012443		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
5CDS-intron	ENST00000536603	ENST00000391919		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
In-frame	ENST00000594087	ENST00000012443		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
5CDS-intron	ENST00000594087	ENST00000391919		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
intron-3CDS	ENST00000601763	ENST00000012443		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
intron-intron	ENST00000601763	ENST00000391919		TCGA	LD	LUSC	TCGA-22-1016-01A	CCDC61	chr19	46506759	+	PPP5C	chr19	46886668	+
Frame-shit	ENST00000379540	ENST00000263228		TCGA	LD	LUSC	TCGA-22-1016-01A	NFX1	chr9	33313791	+	UBE2R2	chr9	33900172	+
Frame-shit	ENST00000379521	ENST00000263228		TCGA	LD	LUSC	TCGA-22-1016-01A	NFX1	chr9	33313791	+	UBE2R2	chr9	33900172	+
Frame-shit	ENST00000318524	ENST00000263228		TCGA	LD	LUSC	TCGA-22-1016-01A	NFX1	chr9	33313791	+	UBE2R2	chr9	33900172	+
intron-3CDS	ENST00000463421	ENST00000263228		TCGA	LD	LUSC	TCGA-22-1016-01A	NFX1	chr9	33313791	+	UBE2R2	chr9	33900172	+
In-frame	ENST00000264279	ENST00000374580		TCGA	LD	LUSC	TCGA-22-1016-01A	NOP58	chr2	203152447	+	BMPR2	chr2	203329532	+
In-frame	ENST00000264279	ENST00000374574		TCGA	LD	LUSC	TCGA-22-1016-01A	NOP58	chr2	203152447	+	BMPR2	chr2	203329532	+
5CDS-intron	ENST00000264279	ENST00000479069		TCGA	LD	LUSC	TCGA-22-1016-01A	NOP58	chr2	203152447	+	BMPR2	chr2	203329532	+
intron-3CDS	ENST00000467734	ENST00000374580		TCGA	LD	LUSC	TCGA-22-1016-01A	NOP58	chr2	203152447	+	BMPR2	chr2	203329532	+
intron-3CDS	ENST00000467734	ENST00000374574		TCGA	LD	LUSC	TCGA-22-1016-01A	NOP58	chr2	203152447	+	BMPR2	chr2	203329532	+
intron-intron	ENST00000467734	ENST00000479069		TCGA	LD	LUSC	TCGA-22-1016-01A	NOP58	chr2	203152447	+	BMPR2	chr2	203329532	+
Frame-shit	ENST00000283426	ENST00000505113		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	AHRR	chr5	344008	+
Frame-shit	ENST00000283426	ENST00000316418		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000283426	ENST00000512529		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000283426	ENST00000515206		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	AHRR	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000506456		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	AHRR	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000264933		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000505221		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000509581		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000507528		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000511482		TCGA	LD	LUSC	TCGA-22-1016-01A	PLEKHG4B	chr5	145035	+	PDCD6	chr5	344008	+
5UTR-3CDS	ENST00000406697	ENST00000011653		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
5UTR-3CDS	ENST00000406697	ENST00000541982		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
5UTR-3UTR	ENST00000406697	ENST00000538827		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000328916	ENST00000011653		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000328916	ENST00000541982		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3UTR	ENST00000328916	ENST00000538827		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000360817	ENST00000011653		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000360817	ENST00000541982		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3UTR	ENST00000360817	ENST00000538827		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000402681	ENST00000011653		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000402681	ENST00000541982		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3UTR	ENST00000402681	ENST00000538827		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000495061	ENST00000011653		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3CDS	ENST00000495061	ENST00000541982		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
intron-3UTR	ENST00000495061	ENST00000538827		TCGA	LD	LUSC	TCGA-22-1017-01A	C1S	chr12	7096461	+	CD4	chr12	6923308	+
Frame-shit	ENST00000261556	ENST00000514921		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
Frame-shit	ENST00000261556	ENST00000274897		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000261556	ENST00000370877		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000261556	ENST00000509997		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000261556	ENST00000370876		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000261556	ENST00000511744		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000261556	ENST00000358276		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000261556	ENST00000502396		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-3CDS	ENST00000536419	ENST00000514921		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-3CDS	ENST00000536419	ENST00000274897		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-intron	ENST00000536419	ENST00000370877		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-intron	ENST00000536419	ENST00000509997		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-intron	ENST00000536419	ENST00000370876		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-3UTR	ENST00000536419	ENST00000511744		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-3UTR	ENST00000536419	ENST00000358276		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5UTR-3UTR	ENST00000536419	ENST00000502396		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
Frame-shit	ENST00000538838	ENST00000514921		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
Frame-shit	ENST00000538838	ENST00000274897		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000538838	ENST00000370877		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000538838	ENST00000509997		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-intron	ENST00000538838	ENST00000370876		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000538838	ENST00000511744		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000538838	ENST00000358276		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000538838	ENST00000502396		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-3CDS	ENST00000553335	ENST00000514921		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-3CDS	ENST00000553335	ENST00000274897		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-intron	ENST00000553335	ENST00000370877		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-intron	ENST00000553335	ENST00000509997		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-intron	ENST00000553335	ENST00000370876		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-3UTR	ENST00000553335	ENST00000511744		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-3UTR	ENST00000553335	ENST00000358276		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
intron-3UTR	ENST00000553335	ENST00000502396		TCGA	LD	LUSC	TCGA-22-1017-01A	TMEM260	chr14	57052630	+	MLIP	chr6	53986245	+
5CDS-5UTR	ENST00000461263	ENST00000248600		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000461263	ENST00000359697		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000461263	ENST00000340062		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000461263	ENST00000360591		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000461263	ENST00000431581		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000461263	ENST00000451157		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000461263	ENST00000460184		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000248600		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000359697		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000340062		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000360591		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000431581		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000451157		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000315758	ENST00000460184		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000248600		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000359697		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000340062		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000360591		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000431581		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000451157		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5UTR-5UTR	ENST00000443006	ENST00000460184		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000248600		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000359697		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000340062		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000360591		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000431581		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000451157		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
3UTR-5UTR	ENST00000490105	ENST00000460184		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000248600		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000359697		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000340062		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000360591		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000431581		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000451157		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
5CDS-5UTR	ENST00000432020	ENST00000460184		TCGA	LD	LUSC	TCGA-22-4591-01A	MDH2	chr7	75677544	+	STYXL1	chr7	75659845	-
Frame-shit	ENST00000381920	ENST00000566983		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000381920	ENST00000268261		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000381920	ENST00000539622		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000381920	ENST00000537352		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000381920	ENST00000569958		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
5CDS-intron	ENST00000381920	ENST00000565837		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000561758	ENST00000566983		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000561758	ENST00000268261		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000561758	ENST00000539622		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000561758	ENST00000537352		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
Frame-shit	ENST00000561758	ENST00000569958		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
5CDS-intron	ENST00000561758	ENST00000565837		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
3UTR-3CDS	ENST00000568967	ENST00000566983		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
3UTR-3CDS	ENST00000568967	ENST00000268261		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
3UTR-3CDS	ENST00000568967	ENST00000539622		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
3UTR-3CDS	ENST00000568967	ENST00000537352		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
3UTR-3CDS	ENST00000568967	ENST00000569958		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
3UTR-intron	ENST00000568967	ENST00000565837		TCGA	LD	LUSC	TCGA-22-4591-01A	METTL22	chr16	8729169	+	PMM2	chr16	8941581	+
5CDS-5UTR	ENST00000319217	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000319217	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000319217	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000541718	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000541718	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000541718	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000381022	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000381022	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000381022	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
intron-5UTR	ENST00000541093	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
intron-5UTR	ENST00000541093	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
intron-5UTR	ENST00000541093	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000538841	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000538841	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000538841	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000536827	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000536827	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000536827	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000447879	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000447879	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000447879	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000381015	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000381015	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000381015	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000546205	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000546205	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
5CDS-5UTR	ENST00000546205	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
intron-5UTR	ENST00000540202	ENST00000491129		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
intron-5UTR	ENST00000540202	ENST00000046087		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
intron-5UTR	ENST00000540202	ENST00000419417		TCGA	LD	LUSC	TCGA-22-4591-01A	MPDZ	chr9	13150510	-	ZPBP	chr7	50023115	-
In-frame	ENST00000310380	ENST00000433971		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
In-frame	ENST00000310380	ENST00000345063		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000310380	ENST00000488841		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
Frame-shit	ENST00000437101	ENST00000433971		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
Frame-shit	ENST00000437101	ENST00000345063		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000437101	ENST00000488841		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
In-frame	ENST00000429994	ENST00000433971		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
In-frame	ENST00000429994	ENST00000345063		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000429994	ENST00000488841		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
In-frame	ENST00000355729	ENST00000433971		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
In-frame	ENST00000355729	ENST00000345063		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000355729	ENST00000488841		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000460582	ENST00000433971		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000460582	ENST00000345063		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
intron-intron	ENST00000460582	ENST00000488841		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000356740	ENST00000433971		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000356740	ENST00000345063		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
intron-intron	ENST00000356740	ENST00000488841		TCGA	LD	LUSC	TCGA-22-4591-01A	XXYLT1	chr3	194877178	-	TPRG1	chr3	189028175	+
Frame-shit	ENST00000229239	ENST00000304636		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000229239	ENST00000317840		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396856	ENST00000304636		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396856	ENST00000317840		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396861	ENST00000304636		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396861	ENST00000317840		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396859	ENST00000304636		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396859	ENST00000317840		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396858	ENST00000304636		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
Frame-shit	ENST00000396858	ENST00000317840		TCGA	LD	LUSC	TCGA-22-4593-01A	GAPDH	chr12	6647162	+	COL3A1	chr2	189862426	+
In-frame	ENST00000379719	ENST00000450114		TCGA	LD	LUSC	TCGA-22-4593-01A	IPO7	chr11	9406394	+	WEE1	chr11	9597435	+
5CDS-5UTR	ENST00000379719	ENST00000299613		TCGA	LD	LUSC	TCGA-22-4593-01A	IPO7	chr11	9406394	+	WEE1	chr11	9597435	+
intron-3CDS	ENST00000533680	ENST00000450114		TCGA	LD	LUSC	TCGA-22-4593-01A	IPO7	chr11	9406394	+	WEE1	chr11	9597435	+
intron-5UTR	ENST00000533680	ENST00000299613		TCGA	LD	LUSC	TCGA-22-4593-01A	IPO7	chr11	9406394	+	WEE1	chr11	9597435	+
5UTR-intron	ENST00000261973	ENST00000256362		TCGA	LD	LUSC	TCGA-22-4593-01A	RBM25	chr14	73525413	+	VRTN	chr14	74804426	+
5UTR-intron	ENST00000540173	ENST00000256362		TCGA	LD	LUSC	TCGA-22-4593-01A	RBM25	chr14	73525413	+	VRTN	chr14	74804426	+
5UTR-intron	ENST00000527432	ENST00000256362		TCGA	LD	LUSC	TCGA-22-4593-01A	RBM25	chr14	73525413	+	VRTN	chr14	74804426	+
5UTR-intron	ENST00000525321	ENST00000256362		TCGA	LD	LUSC	TCGA-22-4593-01A	RBM25	chr14	73525413	+	VRTN	chr14	74804426	+
5UTR-intron	ENST00000526754	ENST00000256362		TCGA	LD	LUSC	TCGA-22-4593-01A	RBM25	chr14	73525413	+	VRTN	chr14	74804426	+
intron-intron	ENST00000532483	ENST00000256362		TCGA	LD	LUSC	TCGA-22-4593-01A	RBM25	chr14	73525413	+	VRTN	chr14	74804426	+
5CDS-5UTR	ENST00000253251	ENST00000377093		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000253251	ENST00000263934		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000253251	ENST00000377086		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000253251	ENST00000377083		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000253251	ENST00000377081		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-intron	ENST00000253251	ENST00000465635		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5UTR-5UTR	ENST00000377157	ENST00000377093		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5UTR-5UTR	ENST00000377157	ENST00000263934		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5UTR-5UTR	ENST00000377157	ENST00000377086		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5UTR-5UTR	ENST00000377157	ENST00000377083		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5UTR-5UTR	ENST00000377157	ENST00000377081		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5UTR-intron	ENST00000377157	ENST00000465635		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000343090	ENST00000377093		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000343090	ENST00000263934		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000343090	ENST00000377086		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000343090	ENST00000377083		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-5UTR	ENST00000343090	ENST00000377081		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
5CDS-intron	ENST00000343090	ENST00000465635		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000377153	ENST00000377093		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000377153	ENST00000263934		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000377153	ENST00000377086		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000377153	ENST00000377083		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000377153	ENST00000377081		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-intron	ENST00000377153	ENST00000465635		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000475795	ENST00000377093		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000475795	ENST00000263934		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000475795	ENST00000377086		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000475795	ENST00000377083		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-5UTR	ENST00000475795	ENST00000377081		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
intron-intron	ENST00000475795	ENST00000465635		TCGA	LD	LUSC	TCGA-22-4593-01A	UBE4B	chr1	10155654	+	KIF1B	chr1	10292308	+
Frame-shit	ENST00000282041	ENST00000315087		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
5CDS-5UTR	ENST00000282041	ENST00000590497		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
5CDS-5UTR	ENST00000282041	ENST00000538168		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
5CDS-intron	ENST00000282041	ENST00000536490		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
intron-3CDS	ENST00000585906	ENST00000315087		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
intron-5UTR	ENST00000585906	ENST00000590497		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
intron-5UTR	ENST00000585906	ENST00000538168		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
intron-intron	ENST00000585906	ENST00000536490		TCGA	LD	LUSC	TCGA-22-4594-01A	EPG5	chr18	43547143	-	ST8SIA5	chr18	44284627	-
intron-intron	ENST00000543885	ENST00000535628		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000543885	ENST00000588982		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000543885	ENST00000586438		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000543885	ENST00000590800		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000543885	ENST00000332053		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000269439	ENST00000535628		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000269439	ENST00000588982		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000269439	ENST00000586438		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000269439	ENST00000590800		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000269439	ENST00000332053		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000587853	ENST00000535628		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000587853	ENST00000588982		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000587853	ENST00000586438		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000587853	ENST00000590800		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000587853	ENST00000332053		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000590330	ENST00000535628		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000590330	ENST00000588982		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000590330	ENST00000586438		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000590330	ENST00000590800		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000590330	ENST00000332053		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000588679	ENST00000535628		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000588679	ENST00000588982		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000588679	ENST00000586438		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000588679	ENST00000590800		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000588679	ENST00000332053		TCGA	LD	LUSC	TCGA-22-4594-01A	RNF165	chr18	43906910	+	ZBTB7C	chr18	45712366	-
Frame-shit	ENST00000312932	ENST00000336726		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000312932	ENST00000403975		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000403484	ENST00000336726		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000403484	ENST00000403975		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000405717	ENST00000336726		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000405717	ENST00000403975		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000402592	ENST00000336726		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
Frame-shit	ENST00000402592	ENST00000403975		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
intron-3CDS	ENST00000459728	ENST00000336726		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
intron-3CDS	ENST00000459728	ENST00000403975		TCGA	LD	LUSC	TCGA-22-4594-01A	SEC14L2	chr22	30812076	+	HORMAD2	chr22	30572052	+
intron-3CDS	ENST00000370841	ENST00000372572		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370841	ENST00000372573		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370841	ENST00000361346		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370841	ENST00000361776		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370841	ENST00000545068		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370841	ENST00000372571		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370834	ENST00000372572		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370834	ENST00000372573		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370834	ENST00000361346		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370834	ENST00000361776		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370834	ENST00000545068		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000370834	ENST00000372571		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000541113	ENST00000372572		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000541113	ENST00000372573		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000541113	ENST00000361346		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000541113	ENST00000361776		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000541113	ENST00000545068		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000541113	ENST00000372571		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000543667	ENST00000372572		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000543667	ENST00000372573		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000543667	ENST00000361346		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000543667	ENST00000361776		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000543667	ENST00000545068		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000543667	ENST00000372571		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000420607	ENST00000372572		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000420607	ENST00000372573		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000420607	ENST00000361346		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000420607	ENST00000361776		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000420607	ENST00000545068		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000420607	ENST00000372571		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000481374	ENST00000372572		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000481374	ENST00000372573		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000481374	ENST00000361346		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000481374	ENST00000361776		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000481374	ENST00000545068		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
intron-3CDS	ENST00000481374	ENST00000372571		TCGA	LD	LUSC	TCGA-22-4601-01A	ACADM	chr1	76251959	+	FOXJ3	chr1	42647695	-
Frame-shit	ENST00000517956	ENST00000262219		TCGA	LD	LUSC	TCGA-22-4605-01A	FBXO32	chr8	124553139	-	ANXA13	chr8	124714976	-
Frame-shit	ENST00000517956	ENST00000419625		TCGA	LD	LUSC	TCGA-22-4605-01A	FBXO32	chr8	124553139	-	ANXA13	chr8	124714976	-
5CDS-intron	ENST00000517956	ENST00000519045		TCGA	LD	LUSC	TCGA-22-4605-01A	FBXO32	chr8	124553139	-	ANXA13	chr8	124714976	-
Frame-shit	ENST00000443022	ENST00000262219		TCGA	LD	LUSC	TCGA-22-4605-01A	FBXO32	chr8	124553139	-	ANXA13	chr8	124714976	-
Frame-shit	ENST00000443022	ENST00000419625		TCGA	LD	LUSC	TCGA-22-4605-01A	FBXO32	chr8	124553139	-	ANXA13	chr8	124714976	-
5CDS-intron	ENST00000443022	ENST00000519045		TCGA	LD	LUSC	TCGA-22-4605-01A	FBXO32	chr8	124553139	-	ANXA13	chr8	124714976	-
In-frame	ENST00000368026	ENST00000512372		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000368026	ENST00000367980		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000368026	ENST00000367983		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000368026	ENST00000437437		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000479324		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000442691		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000412844		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000428574		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000505005		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000508740		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000367982		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000508387		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000511944		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000504010		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000511748		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000511676		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000502985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000367981		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000515621		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000367984		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000367985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000367979		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000506209		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000368026	ENST00000515452		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-3CDS	ENST00000289779	ENST00000512372		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-3CDS	ENST00000289779	ENST00000367980		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-3CDS	ENST00000289779	ENST00000367983		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-3CDS	ENST00000289779	ENST00000437437		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000479324		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000442691		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000412844		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000428574		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000505005		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000508740		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000367982		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000508387		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000511944		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000504010		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000511748		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000511676		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000502985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000367981		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000515621		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000367984		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000367985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000367979		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000506209		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
3UTR-intron	ENST00000289779	ENST00000515452		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000537746	ENST00000512372		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000537746	ENST00000367980		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000537746	ENST00000367983		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
In-frame	ENST00000537746	ENST00000437437		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000479324		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000442691		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000412844		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000428574		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000505005		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000508740		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000367982		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000508387		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000511944		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000504010		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000511748		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000511676		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000502985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000367981		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000515621		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000367984		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000367985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000367979		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000506209		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
5CDS-intron	ENST00000537746	ENST00000515452		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-3CDS	ENST00000472573	ENST00000512372		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-3CDS	ENST00000472573	ENST00000367980		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-3CDS	ENST00000472573	ENST00000367983		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-3CDS	ENST00000472573	ENST00000437437		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000479324		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000442691		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000412844		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000428574		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000505005		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000508740		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000367982		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000508387		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000511944		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000504010		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000511748		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000511676		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000502985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000367981		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000515621		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000367984		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000367985		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000367979		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000506209		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
intron-intron	ENST00000472573	ENST00000515452		TCGA	LD	LUSC	TCGA-22-4607-01A	F11R	chr1	160990800	-	NR1I3	chr1	161202736	-
Frame-shit	ENST00000579761	ENST00000580123		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579761	ENST00000585293		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579761	ENST00000329783		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579761	ENST00000450736		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579761	ENST00000538213		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
Frame-shit	ENST00000245539	ENST00000580123		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000245539	ENST00000585293		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000245539	ENST00000329783		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000245539	ENST00000450736		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000245539	ENST00000538213		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
Frame-shit	ENST00000579002	ENST00000580123		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579002	ENST00000585293		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579002	ENST00000329783		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579002	ENST00000450736		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
5CDS-intron	ENST00000579002	ENST00000538213		TCGA	LD	LUSC	TCGA-22-4607-01A	MRPS7	chr17	73259588	+	SLC16A5	chr17	73096102	+
3UTR-3CDS	ENST00000462832	ENST00000344773		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
3UTR-3CDS	ENST00000462832	ENST00000379624		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
3UTR-3CDS	ENST00000462832	ENST00000342045		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
3UTR-3CDS	ENST00000462832	ENST00000379632		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
3UTR-3CDS	ENST00000462832	ENST00000361704		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
3UTR-intron	ENST00000462832	ENST00000603461		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000379579	ENST00000344773		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000379579	ENST00000379624		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000379579	ENST00000342045		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000379579	ENST00000379632		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000379579	ENST00000361704		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-intron	ENST00000379579	ENST00000603461		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000334056	ENST00000344773		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000334056	ENST00000379624		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000334056	ENST00000342045		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000334056	ENST00000379632		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000334056	ENST00000361704		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-intron	ENST00000334056	ENST00000603461		TCGA	LD	LUSC	TCGA-22-4607-01A	SPDYA	chr2	29006844	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000259605	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000259605	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000259605	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000353739	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000353739	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000353739	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000357058	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000357058	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000357058	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000350199	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000350199	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000350199	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000377885	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000377885	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000377885	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000377877	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000377877	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000377877	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000491349	ENST00000379725		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000491349	ENST00000379723		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000491349	ENST00000379721		TCGA	LD	LUSC	TCGA-22-4609-01A	RNF38	chr9	36424610	-	SPINK4	chr9	33245110	+
5CDS-5UTR	ENST00000397292	ENST00000379992		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000397292	ENST00000493941		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000397292	ENST00000308675		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000520884	ENST00000379992		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
5CDS-intron	ENST00000520884	ENST00000493941		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
5CDS-5UTR	ENST00000520884	ENST00000308675		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000520641	ENST00000379992		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
intron-intron	ENST00000520641	ENST00000493941		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
intron-5UTR	ENST00000520641	ENST00000308675		TCGA	LD	LUSC	TCGA-22-4613-01A	PLAA	chr9	26935011	-	LINGO2	chr9	27950704	-
In-frame	ENST00000490103	ENST00000351008		TCGA	LD	LUSC	TCGA-22-4613-01A	THOC5	chr22	29935319	-	SPATA16	chr3	172737365	-
Frame-shit	ENST00000397871	ENST00000351008		TCGA	LD	LUSC	TCGA-22-4613-01A	THOC5	chr22	29935319	-	SPATA16	chr3	172737365	-
In-frame	ENST00000397872	ENST00000351008		TCGA	LD	LUSC	TCGA-22-4613-01A	THOC5	chr22	29935319	-	SPATA16	chr3	172737365	-
Frame-shit	ENST00000397873	ENST00000351008		TCGA	LD	LUSC	TCGA-22-4613-01A	THOC5	chr22	29935319	-	SPATA16	chr3	172737365	-
Frame-shit	ENST00000260818	ENST00000264991		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
Frame-shit	ENST00000260818	ENST00000356232		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
Frame-shit	ENST00000260818	ENST00000493720		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
Frame-shit	ENST00000260818	ENST00000473651		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
Frame-shit	ENST00000260818	ENST00000494238		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
5CDS-intron	ENST00000260818	ENST00000480955		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
intron-3CDS	ENST00000486798	ENST00000264991		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
intron-3CDS	ENST00000486798	ENST00000356232		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
intron-3CDS	ENST00000486798	ENST00000493720		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
intron-3CDS	ENST00000486798	ENST00000473651		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
intron-3CDS	ENST00000486798	ENST00000494238		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
intron-intron	ENST00000486798	ENST00000480955		TCGA	LD	LUSC	TCGA-22-5471-01A	DNAJC13	chr3	132215507	+	UBA5	chr3	132387662	+
Frame-shit	ENST00000540746	ENST00000360605		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
Frame-shit	ENST00000540746	ENST00000542441		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-5UTR	ENST00000540746	ENST00000392271		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-intron	ENST00000540746	ENST00000312051		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-intron	ENST00000540746	ENST00000574176		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
Frame-shit	ENST00000544216	ENST00000360605		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
Frame-shit	ENST00000544216	ENST00000542441		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-5UTR	ENST00000544216	ENST00000392271		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-intron	ENST00000544216	ENST00000312051		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-intron	ENST00000544216	ENST00000574176		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
Frame-shit	ENST00000433627	ENST00000360605		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
Frame-shit	ENST00000433627	ENST00000542441		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-5UTR	ENST00000433627	ENST00000392271		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-intron	ENST00000433627	ENST00000312051		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
5CDS-intron	ENST00000433627	ENST00000574176		TCGA	LD	LUSC	TCGA-22-5471-01A	LSM14A	chr19	34663668	+	URI1	chr19	30462100	+
intron-3CDS	ENST00000409720	ENST00000472531		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000409720	ENST00000491356		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000409720	ENST00000340684		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000409720	ENST00000543802		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-5UTR	ENST00000409720	ENST00000491848		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000356853	ENST00000472531		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000356853	ENST00000491356		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000356853	ENST00000340684		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-3CDS	ENST00000356853	ENST00000543802		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
intron-5UTR	ENST00000356853	ENST00000491848		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
5UTR-3CDS	ENST00000483627	ENST00000472531		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
5UTR-3CDS	ENST00000483627	ENST00000491356		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
5UTR-3CDS	ENST00000483627	ENST00000340684		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
5UTR-3CDS	ENST00000483627	ENST00000543802		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
5UTR-5UTR	ENST00000483627	ENST00000491848		TCGA	LD	LUSC	TCGA-22-5474-01A	NHEJ1	chr2	219959996	-	ZNF124	chr1	247323115	-
5CDS-intron	ENST00000264380	ENST00000409720		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
5CDS-intron	ENST00000264380	ENST00000356853		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
5CDS-5UTR	ENST00000264380	ENST00000483627		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-intron	ENST00000392202	ENST00000409720		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-intron	ENST00000392202	ENST00000356853		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-5UTR	ENST00000392202	ENST00000483627		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-intron	ENST00000308862	ENST00000409720		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-intron	ENST00000308862	ENST00000356853		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-5UTR	ENST00000308862	ENST00000483627		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
5CDS-intron	ENST00000407449	ENST00000409720		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
5CDS-intron	ENST00000407449	ENST00000356853		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
5CDS-5UTR	ENST00000407449	ENST00000483627		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-intron	ENST00000474721	ENST00000409720		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-intron	ENST00000474721	ENST00000356853		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-5UTR	ENST00000474721	ENST00000483627		TCGA	LD	LUSC	TCGA-22-5474-01A	PIKFYVE	chr2	209142432	+	NHEJ1	chr2	219960077	-
intron-3CDS	ENST00000408388	ENST00000378204		TCGA	LD	LUSC	TCGA-22-5474-01A	PVT1	chr8	128806980	+	EXT1	chr8	118849440	-
Frame-shit	ENST00000374864	ENST00000398174		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000374864	ENST00000340852		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000374864	ENST00000335574		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000374864	ENST00000376127		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
5CDS-3UTR	ENST00000374864	ENST00000492709		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000535650	ENST00000398174		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000535650	ENST00000340852		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000535650	ENST00000335574		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000535650	ENST00000376127		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
5CDS-3UTR	ENST00000535650	ENST00000492709		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000262650	ENST00000398174		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000262650	ENST00000340852		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000262650	ENST00000335574		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
Frame-shit	ENST00000262650	ENST00000376127		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
5CDS-3UTR	ENST00000262650	ENST00000492709		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
3UTR-3CDS	ENST00000483727	ENST00000398174		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
3UTR-3CDS	ENST00000483727	ENST00000340852		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
3UTR-3CDS	ENST00000483727	ENST00000335574		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
3UTR-3CDS	ENST00000483727	ENST00000376127		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
3UTR-3UTR	ENST00000483727	ENST00000492709		TCGA	LD	LUSC	TCGA-22-5477-01A	ITCH	chr20	33065617	+	HM13	chr20	30126044	+
5CDS-3UTR	ENST00000381556	ENST00000341657		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000381556	ENST00000570535		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000381556	ENST00000574367		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000381556	ENST00000573722		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000381556	ENST00000433651		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-3UTR	ENST00000254718	ENST00000341657		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000254718	ENST00000570535		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000254718	ENST00000574367		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000254718	ENST00000573722		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
5CDS-intron	ENST00000254718	ENST00000433651		TCGA	LD	LUSC	TCGA-22-5477-01A	MYBBP1A	chr17	4457105	-	ANKFY1	chr17	4067467	-
intron-5UTR	ENST00000252577	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000252577	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000252577	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000360315	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000360315	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000537887	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000537887	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000404158	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000404158	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000358713	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000358713	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000429563	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000429563	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000344063		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000431533		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000428193		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000558815		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000560583		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000560055		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000559463		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000558131		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-5UTR	ENST00000473184	ENST00000558752		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-intron	ENST00000473184	ENST00000458349		TCGA	LD	LUSC	TCGA-22-5478-01A	GATAD2A	chr19	19516828	+	RPL28	chr19	55897718	+
intron-3CDS	ENST00000287912	ENST00000380050		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000287912	ENST00000265741		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000287912	ENST00000406263		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000287912	ENST00000436577		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-intron	ENST00000287912	ENST00000496279		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000401878	ENST00000380050		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000401878	ENST00000265741		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000401878	ENST00000406263		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000401878	ENST00000436577		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
5CDS-intron	ENST00000401878	ENST00000496279		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000392759	ENST00000380050		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000392759	ENST00000265741		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000392759	ENST00000406263		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000392759	ENST00000436577		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-intron	ENST00000392759	ENST00000496279		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000486747	ENST00000380050		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000486747	ENST00000265741		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000486747	ENST00000406263		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-3CDS	ENST00000486747	ENST00000436577		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
intron-intron	ENST00000486747	ENST00000496279		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000341148	ENST00000380050		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000341148	ENST00000265741		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000341148	ENST00000406263		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000341148	ENST00000436577		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
5CDS-intron	ENST00000341148	ENST00000496279		TCGA	LD	LUSC	TCGA-22-5478-01A	RBM33	chr7	155567341	+	CDK14	chr7	90613463	+
In-frame	ENST00000326793	ENST00000310380		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000326793	ENST00000437101		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
In-frame	ENST00000326793	ENST00000429994		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000326793	ENST00000355729		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
5CDS-5UTR	ENST00000326793	ENST00000460582		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
5CDS-5UTR	ENST00000326793	ENST00000356740		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000310380		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000437101		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000429994		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-3CDS	ENST00000472860	ENST00000355729		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000472860	ENST00000460582		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
intron-5UTR	ENST00000472860	ENST00000356740		TCGA	LD	LUSC	TCGA-22-5479-01A	ACAP2	chr3	195101738	-	XXYLT1	chr3	194790840	-
Frame-shit	ENST00000366508	ENST00000366514		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
Frame-shit	ENST00000366508	ENST00000544618		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
Frame-shit	ENST00000326225	ENST00000366514		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
Frame-shit	ENST00000326225	ENST00000544618		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
Frame-shit	ENST00000391829	ENST00000366514		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
Frame-shit	ENST00000391829	ENST00000544618		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
intron-3CDS	ENST00000470300	ENST00000366514		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
intron-3CDS	ENST00000470300	ENST00000544618		TCGA	LD	LUSC	TCGA-22-5479-01A	AHCTF1	chr1	247005996	-	TFB2M	chr1	246729361	-
Frame-shit	ENST00000594234	ENST00000292574		TCGA	LD	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080644	-	CCDC105	chr19	15131273	+
Frame-shit	ENST00000599369	ENST00000292574		TCGA	LD	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080644	-	CCDC105	chr19	15131273	+
Frame-shit	ENST00000215057	ENST00000292574		TCGA	LD	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080644	-	CCDC105	chr19	15131273	+
intron-3CDS	ENST00000594108	ENST00000292574		TCGA	LD	LUSC	TCGA-22-5479-01A	MZF1	chr19	59080644	-	CCDC105	chr19	15131273	+
intron-5UTR	ENST00000425967	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000425967	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000425967	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000425967	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000425967	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000425967	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000425967	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000397091	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000397091	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000397091	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000397091	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000397091	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000397091	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000397091	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000447712	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000447712	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000447712	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000447712	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000447712	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000447712	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000447712	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000341462	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000341462	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000341462	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000341462	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000341462	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000341462	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000341462	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000532791	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000532791	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000532791	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000532791	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000532791	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000532791	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000532791	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397113	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397113	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397113	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397113	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397113	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000397113	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000397113	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000356207	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000356207	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000356207	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000356207	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000356207	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000356207	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000356207	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000335922	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000335922	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000335922	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000335922	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000335922	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000335922	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000335922	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000326324	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000326324	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000326324	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000326324	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000326324	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000326324	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5UTR-intron	ENST00000326324	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397103	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397103	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397103	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397103	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397103	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000397103	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000397103	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397108	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397108	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397108	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397108	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000397108	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000397108	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000397108	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000496629	ENST00000519476		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000496629	ENST00000297720		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000496629	ENST00000524874		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000496629	ENST00000379957		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-5UTR	ENST00000496629	ENST00000523983		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000496629	ENST00000527710		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
intron-intron	ENST00000496629	ENST00000528827		TCGA	LD	LUSC	TCGA-22-5480-01A	FGFR1	chr8	38325499	-	LETM2	chr8	38245468	+
5CDS-intron	ENST00000448150	ENST00000406516		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000448150	ENST00000444929		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000448150	ENST00000331728		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000448150	ENST00000333611		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000448150	ENST00000340552		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-3UTR	ENST00000448150	ENST00000467301		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000367649	ENST00000406516		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000367649	ENST00000444929		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000367649	ENST00000331728		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000367649	ENST00000333611		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-intron	ENST00000367649	ENST00000340552		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
5CDS-3UTR	ENST00000367649	ENST00000467301		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000465723	ENST00000406516		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000465723	ENST00000444929		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000465723	ENST00000331728		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000465723	ENST00000333611		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000465723	ENST00000340552		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-3UTR	ENST00000465723	ENST00000467301		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000462775	ENST00000406516		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000462775	ENST00000444929		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000462775	ENST00000331728		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000462775	ENST00000333611		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-intron	ENST00000462775	ENST00000340552		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-3UTR	ENST00000462775	ENST00000467301		TCGA	LD	LUSC	TCGA-22-5480-01A	RASAL2	chr1	178063829	+	LIMK2	chr22	31674283	+
intron-3CDS	ENST00000425327	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000393775	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000489689	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000354673	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000441144	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000491903	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000459718	ENST00000390242		TCGA	LD	LUSC	TCGA-22-5481-01A	IGSF11	chr3	118647517	-	IGKJ1	chr2	89161429	-
intron-3CDS	ENST00000302349	ENST00000209728		TCGA	LD	LUSC	TCGA-22-5481-01A	MPHOSPH9	chr12	123717622	-	CDC6	chr17	38447721	+
intron-3CDS	ENST00000541076	ENST00000209728		TCGA	LD	LUSC	TCGA-22-5481-01A	MPHOSPH9	chr12	123717622	-	CDC6	chr17	38447721	+
5UTR-3CDS	ENST00000606320	ENST00000209728		TCGA	LD	LUSC	TCGA-22-5481-01A	MPHOSPH9	chr12	123717622	-	CDC6	chr17	38447721	+
intron-3CDS	ENST00000392425	ENST00000209728		TCGA	LD	LUSC	TCGA-22-5481-01A	MPHOSPH9	chr12	123717622	-	CDC6	chr17	38447721	+
5UTR-3CDS	ENST00000539639	ENST00000209728		TCGA	LD	LUSC	TCGA-22-5481-01A	MPHOSPH9	chr12	123717622	-	CDC6	chr17	38447721	+
5CDS-3UTR	ENST00000435803	ENST00000372797		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
5CDS-3UTR	ENST00000435803	ENST00000372802		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
5CDS-intron	ENST00000435803	ENST00000372792		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
5CDS-intron	ENST00000435803	ENST00000372798		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
5CDS-3UTR	ENST00000435803	ENST00000340450		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
5CDS-3UTR	ENST00000435803	ENST00000372805		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
5CDS-intron	ENST00000435803	ENST00000479759		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-3UTR	ENST00000544596	ENST00000372797		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-3UTR	ENST00000544596	ENST00000372802		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-intron	ENST00000544596	ENST00000372792		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-intron	ENST00000544596	ENST00000372798		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-3UTR	ENST00000544596	ENST00000340450		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-3UTR	ENST00000544596	ENST00000372805		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
intron-intron	ENST00000544596	ENST00000479759		TCGA	LD	LUSC	TCGA-22-5482-01A	ABCA13	chr7	48259074	+	CAP1	chr1	40537925	+
In-frame	ENST00000356175	ENST00000321666		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
In-frame	ENST00000356175	ENST00000440501		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
5CDS-5UTR	ENST00000356175	ENST00000584729		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
In-frame	ENST00000358273	ENST00000321666		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
In-frame	ENST00000358273	ENST00000440501		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
5CDS-5UTR	ENST00000358273	ENST00000584729		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
In-frame	ENST00000431387	ENST00000321666		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
In-frame	ENST00000431387	ENST00000440501		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
5CDS-5UTR	ENST00000431387	ENST00000584729		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-3CDS	ENST00000581113	ENST00000321666		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-3CDS	ENST00000581113	ENST00000440501		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-5UTR	ENST00000581113	ENST00000584729		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-3CDS	ENST00000417592	ENST00000321666		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-3CDS	ENST00000417592	ENST00000440501		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-5UTR	ENST00000417592	ENST00000584729		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-3CDS	ENST00000444181	ENST00000321666		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-3CDS	ENST00000444181	ENST00000440501		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
intron-5UTR	ENST00000444181	ENST00000584729		TCGA	LD	LUSC	TCGA-22-5482-01A	NF1	chr17	29509683	+	SLC46A1	chr17	26733015	-
Frame-shit	ENST00000511642	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
intron-3CDS	ENST00000415497	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
In-frame	ENST00000372988	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
In-frame	ENST00000510503	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
intron-3CDS	ENST00000511686	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
Frame-shit	ENST00000372991	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
Frame-shit	ENST00000372987	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
intron-3CDS	ENST00000414200	ENST00000230340		TCGA	LD	LUSC	TCGA-22-5483-01A	CCND3	chr6	41908108	-	BYSL	chr6	41895112	+
intron-3CDS	ENST00000380752	ENST00000404338		TCGA	LD	LUSC	TCGA-22-5483-01A	SLC7A1	chr13	30160862	-	ARHGAP35	chr19	47440521	+
intron-intron	ENST00000380752	ENST00000598548		TCGA	LD	LUSC	TCGA-22-5483-01A	SLC7A1	chr13	30160862	-	ARHGAP35	chr19	47440521	+
intron-3CDS	ENST00000473577	ENST00000404338		TCGA	LD	LUSC	TCGA-22-5483-01A	SLC7A1	chr13	30160862	-	ARHGAP35	chr19	47440521	+
intron-intron	ENST00000473577	ENST00000598548		TCGA	LD	LUSC	TCGA-22-5483-01A	SLC7A1	chr13	30160862	-	ARHGAP35	chr19	47440521	+
5UTR-3CDS	ENST00000397677	ENST00000390560		TCGA	LD	LUSC	TCGA-22-5489-01A	CHMP7	chr8	23101248	+	IGHJ6	chr14	106329450	-
intron-3CDS	ENST00000313219	ENST00000390560		TCGA	LD	LUSC	TCGA-22-5489-01A	CHMP7	chr8	23101248	+	IGHJ6	chr14	106329450	-
intron-3CDS	ENST00000520102	ENST00000390560		TCGA	LD	LUSC	TCGA-22-5489-01A	CHMP7	chr8	23101248	+	IGHJ6	chr14	106329450	-
In-frame	ENST00000380055	ENST00000380821		TCGA	LD	LUSC	TCGA-22-5489-01A	LRRC19	chr9	26996309	-	SNAPC3	chr9	15453039	+
5CDS-intron	ENST00000380055	ENST00000461041		TCGA	LD	LUSC	TCGA-22-5489-01A	LRRC19	chr9	26996309	-	SNAPC3	chr9	15453039	+
5CDS-intron	ENST00000380055	ENST00000380799		TCGA	LD	LUSC	TCGA-22-5489-01A	LRRC19	chr9	26996309	-	SNAPC3	chr9	15453039	+
5UTR-3CDS	ENST00000482770	ENST00000380821		TCGA	LD	LUSC	TCGA-22-5489-01A	LRRC19	chr9	26996309	-	SNAPC3	chr9	15453039	+
5UTR-intron	ENST00000482770	ENST00000461041		TCGA	LD	LUSC	TCGA-22-5489-01A	LRRC19	chr9	26996309	-	SNAPC3	chr9	15453039	+
5UTR-intron	ENST00000482770	ENST00000380799		TCGA	LD	LUSC	TCGA-22-5489-01A	LRRC19	chr9	26996309	-	SNAPC3	chr9	15453039	+
5CDS-5UTR	ENST00000380821	ENST00000380055		TCGA	LD	LUSC	TCGA-22-5489-01A	SNAPC3	chr9	15451400	+	LRRC19	chr9	26999701	-
5CDS-intron	ENST00000380821	ENST00000482770		TCGA	LD	LUSC	TCGA-22-5489-01A	SNAPC3	chr9	15451400	+	LRRC19	chr9	26999701	-
intron-5UTR	ENST00000461041	ENST00000380055		TCGA	LD	LUSC	TCGA-22-5489-01A	SNAPC3	chr9	15451400	+	LRRC19	chr9	26999701	-
intron-intron	ENST00000461041	ENST00000482770		TCGA	LD	LUSC	TCGA-22-5489-01A	SNAPC3	chr9	15451400	+	LRRC19	chr9	26999701	-
5CDS-5UTR	ENST00000380799	ENST00000380055		TCGA	LD	LUSC	TCGA-22-5489-01A	SNAPC3	chr9	15451400	+	LRRC19	chr9	26999701	-
5CDS-intron	ENST00000380799	ENST00000482770		TCGA	LD	LUSC	TCGA-22-5489-01A	SNAPC3	chr9	15451400	+	LRRC19	chr9	26999701	-
5CDS-3UTR	ENST00000486442	ENST00000446425		TCGA	LD	LUSC	TCGA-22-5491-01A	KLHL29	chr2	23865720	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000486442	ENST00000404924		TCGA	LD	LUSC	TCGA-22-5491-01A	KLHL29	chr2	23865720	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000486442	ENST00000309033		TCGA	LD	LUSC	TCGA-22-5491-01A	KLHL29	chr2	23865720	+	UBXN2A	chr2	24181171	+
5CDS-5UTR	ENST00000486442	ENST00000535786		TCGA	LD	LUSC	TCGA-22-5491-01A	KLHL29	chr2	23865720	+	UBXN2A	chr2	24181171	+
5CDS-3UTR	ENST00000534894	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000534894	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000534894	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000534894	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000534894	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000534894	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000536810	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000536810	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000536810	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000536810	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000536810	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000536810	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000545257	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000545257	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000545257	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000545257	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000545257	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000545257	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355995	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355995	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355995	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355995	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355995	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355995	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000543371	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000543371	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000543371	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000543371	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000543371	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000543371	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355717	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355717	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000355717	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355717	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355717	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000355717	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000538897	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000538897	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000538897	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000538897	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000538897	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000538897	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000349937	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000349937	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000349937	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000349937	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000349937	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000349937	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369397	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369397	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369397	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369397	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369397	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369397	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000352065	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000352065	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000352065	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000352065	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000352065	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000352065	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369395	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369395	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-3UTR	ENST00000369395	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369395	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369395	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-intron	ENST00000369395	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-3UTR	ENST00000542695	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-3UTR	ENST00000542695	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-3UTR	ENST00000542695	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-intron	ENST00000542695	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-intron	ENST00000542695	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5UTR-intron	ENST00000542695	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369389	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369389	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369389	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369389	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369389	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369389	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369386	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369386	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000369386	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369386	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369386	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000369386	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000466338	ENST00000414722		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000466338	ENST00000435944		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-3UTR	ENST00000466338	ENST00000454857		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000466338	ENST00000439517		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000466338	ENST00000426021		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
intron-intron	ENST00000466338	ENST00000454781		TCGA	LD	LUSC	TCGA-22-5491-01A	TCF7L2	chr10	114799885	+	CASC2	chr10	119966034	+
5CDS-5UTR	ENST00000341832	ENST00000378707		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000341832	ENST00000359836		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000341832	ENST00000541735		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000341832	ENST00000343523		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000341832	ENST00000378677		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000341832	ENST00000357033		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000341832	ENST00000474231		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000341832	ENST00000378723		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000341832	ENST00000378702		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000341832	ENST00000361471		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000341832	ENST00000378680		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000341832	ENST00000288447		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000341832	ENST00000445312		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000378707		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000359836		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000541735		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000343523		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000378677		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000357033		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000340677	ENST00000474231		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000340677	ENST00000378723		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000340677	ENST00000378702		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000340677	ENST00000361471		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000340677	ENST00000378680		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000340677	ENST00000288447		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000340677	ENST00000445312		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000378707		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000359836		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000541735		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000343523		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000378677		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000357033		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000407249	ENST00000474231		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000407249	ENST00000378723		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000407249	ENST00000378702		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000407249	ENST00000361471		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000407249	ENST00000378680		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000407249	ENST00000288447		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000407249	ENST00000445312		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000378707		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000359836		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000541735		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000343523		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000378677		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000357033		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-5UTR	ENST00000317673	ENST00000474231		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000317673	ENST00000378723		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000317673	ENST00000378702		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000317673	ENST00000361471		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000317673	ENST00000378680		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000317673	ENST00000288447		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
5CDS-intron	ENST00000317673	ENST00000445312		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CDK11B	chr1	1577023	-	DMD	chrX	31854936	-
intron-3CDS	ENST00000379687	ENST00000379068		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-3CDS	ENST00000379687	ENST00000379059		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-intron	ENST00000379687	ENST00000493342		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
5UTR-3CDS	ENST00000451208	ENST00000379068		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
5UTR-3CDS	ENST00000451208	ENST00000379059		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
5UTR-intron	ENST00000451208	ENST00000493342		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-3CDS	ENST00000379682	ENST00000379068		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-3CDS	ENST00000379682	ENST00000379059		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-intron	ENST00000379682	ENST00000493342		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-3CDS	ENST00000356980	ENST00000379068		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-3CDS	ENST00000356980	ENST00000379059		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
intron-intron	ENST00000356980	ENST00000493342		TCGA	LD	LUSC	TCGA-22-A5C4-01A	CXorf23	chrX	19932270	-	POLA1	chrX	24828015	+
Frame-shit	ENST00000414820	ENST00000511367		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000414820	ENST00000442743		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000414820	ENST00000344624		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000414820	ENST00000513349		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5CDS-intron	ENST00000414820	ENST00000504361		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000272610	ENST00000511367		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000272610	ENST00000442743		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000272610	ENST00000344624		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000272610	ENST00000513349		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5CDS-intron	ENST00000272610	ENST00000504361		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000440566	ENST00000511367		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000440566	ENST00000442743		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000440566	ENST00000344624		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
Frame-shit	ENST00000440566	ENST00000513349		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5CDS-intron	ENST00000440566	ENST00000504361		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5UTR-3CDS	ENST00000468548	ENST00000511367		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5UTR-3CDS	ENST00000468548	ENST00000442743		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5UTR-3CDS	ENST00000468548	ENST00000344624		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5UTR-3CDS	ENST00000468548	ENST00000513349		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5UTR-intron	ENST00000468548	ENST00000504361		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAHD2B	chr2	97755846	-	DROSHA	chr5	31407052	-
5CDS-5UTR	ENST00000299338	ENST00000267843		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
5CDS-5UTR	ENST00000299338	ENST00000560270		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
5CDS-intron	ENST00000299338	ENST00000560704		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000561064	ENST00000267843		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000561064	ENST00000560270		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-intron	ENST00000561064	ENST00000560704		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000558594	ENST00000267843		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000558594	ENST00000560270		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-intron	ENST00000558594	ENST00000560704		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000560246	ENST00000267843		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000560246	ENST00000560270		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-intron	ENST00000560246	ENST00000560704		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000558862	ENST00000267843		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000558862	ENST00000560270		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
intron-intron	ENST00000558862	ENST00000560704		TCGA	LD	LUSC	TCGA-22-A5C4-01A	FAM227B	chr15	49663499	-	FGF7	chr15	49716229	+
In-frame	ENST00000380393	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000380393	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000380393	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000216877	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000216877	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000216877	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000358719	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000358719	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000358719	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000399903	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000399903	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000399903	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
Frame-shit	ENST00000425918	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
Frame-shit	ENST00000425918	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000425918	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000318266	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000318266	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000318266	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000356147	ENST00000356260		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
In-frame	ENST00000356147	ENST00000395711		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
5CDS-intron	ENST00000356147	ENST00000513089		TCGA	LD	LUSC	TCGA-22-A5C4-01A	PTPRA	chr20	3018775	+	SDAD1	chr4	76879094	-
intron-3CDS	ENST00000336095	ENST00000246186		TCGA	LD	LUSC	TCGA-22-A5C4-01A	RNF24	chr20	3996084	-	MMP24	chr20	33834643	+
5UTR-3CDS	ENST00000358395	ENST00000246186		TCGA	LD	LUSC	TCGA-22-A5C4-01A	RNF24	chr20	3996084	-	MMP24	chr20	33834643	+
intron-3CDS	ENST00000432261	ENST00000246186		TCGA	LD	LUSC	TCGA-22-A5C4-01A	RNF24	chr20	3996084	-	MMP24	chr20	33834643	+
5UTR-3CDS	ENST00000545616	ENST00000246186		TCGA	LD	LUSC	TCGA-22-A5C4-01A	RNF24	chr20	3996084	-	MMP24	chr20	33834643	+
5CDS-5UTR	ENST00000282908	ENST00000295958		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5CDS-5UTR	ENST00000282908	ENST00000511809		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5CDS-intron	ENST00000282908	ENST00000510628		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5UTR-5UTR	ENST00000512636	ENST00000295958		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5UTR-5UTR	ENST00000512636	ENST00000511809		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5UTR-intron	ENST00000512636	ENST00000510628		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5UTR-5UTR	ENST00000510398	ENST00000295958		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5UTR-5UTR	ENST00000510398	ENST00000511809		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
5UTR-intron	ENST00000510398	ENST00000510628		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
intron-5UTR	ENST00000508728	ENST00000295958		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
intron-5UTR	ENST00000508728	ENST00000511809		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
intron-intron	ENST00000508728	ENST00000510628		TCGA	LD	LUSC	TCGA-22-A5C4-01A	STK32B	chr4	5141687	+	SMIM14	chr4	39606800	-
Frame-shit	ENST00000292778	ENST00000409790		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
Frame-shit	ENST00000292778	ENST00000409552		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
5CDS-3UTR	ENST00000292778	ENST00000465491		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
5CDS-intron	ENST00000292778	ENST00000381822		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
Frame-shit	ENST00000398873	ENST00000409790		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
Frame-shit	ENST00000398873	ENST00000409552		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
5CDS-3UTR	ENST00000398873	ENST00000465491		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
5CDS-intron	ENST00000398873	ENST00000381822		TCGA	LD	LUSC	TCGA-22-A5C4-01A	YDJC	chr22	21983597	-	CLEC16A	chr16	11154759	+
In-frame	ENST00000268070	ENST00000284382		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000268070	ENST00000538112		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000268070	ENST00000394113		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000268070	ENST00000560944		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000559976	ENST00000284382		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000559976	ENST00000538112		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
intron-3CDS	ENST00000559976	ENST00000394113		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
intron-5UTR	ENST00000559976	ENST00000560944		TCGA	LD	LUSC	TCGA-33-4532-01A	ADAMTS17	chr15	100692817	-	CERS3	chr15	100943070	-
In-frame	ENST00000283233	ENST00000263238		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
In-frame	ENST00000283233	ENST00000536059		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
In-frame	ENST00000283233	ENST00000535589		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
intron-3CDS	ENST00000409187	ENST00000263238		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
intron-3CDS	ENST00000409187	ENST00000536059		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
intron-3CDS	ENST00000409187	ENST00000535589		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
5UTR-3CDS	ENST00000536771	ENST00000263238		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
5UTR-3CDS	ENST00000536771	ENST00000536059		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
5UTR-3CDS	ENST00000536771	ENST00000535589		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
In-frame	ENST00000409889	ENST00000263238		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
In-frame	ENST00000409889	ENST00000536059		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
In-frame	ENST00000409889	ENST00000535589		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
5UTR-3CDS	ENST00000491563	ENST00000263238		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
5UTR-3CDS	ENST00000491563	ENST00000536059		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
5UTR-3CDS	ENST00000491563	ENST00000535589		TCGA	LD	LUSC	TCGA-33-4532-01A	CCDC148	chr2	159312927	-	ACTR3	chr2	114684922	+
In-frame	ENST00000574590	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
In-frame	ENST00000574590	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
In-frame	ENST00000574590	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
In-frame	ENST00000574590	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
In-frame	ENST00000574590	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000575318	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000575318	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000575318	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000575318	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000575318	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000572904	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000572904	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000572904	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000572904	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000572904	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000262419	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000262419	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000262419	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000262419	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000262419	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000432791	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000432791	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000432791	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000432791	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
Frame-shit	ENST00000432791	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000393476	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000393476	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000393476	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000393476	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000393476	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000576248	ENST00000378449		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000576248	ENST00000433649		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000576248	ENST00000268876		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000576248	ENST00000394570		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5UTR-3CDS	ENST00000576248	ENST00000591048		TCGA	LD	LUSC	TCGA-33-4532-01A	KANSL1	chr17	44248221	-	UNC45B	chr17	33507578	+
5CDS-intron	ENST00000264377	ENST00000410087		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000264377	ENST00000409440		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000264377	ENST00000374969		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000264377	ENST00000339098		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000264377	ENST00000374970		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000264377	ENST00000479558		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374416	ENST00000410087		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374416	ENST00000409440		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374416	ENST00000374969		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374416	ENST00000339098		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374416	ENST00000374970		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374416	ENST00000479558		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374415	ENST00000410087		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374415	ENST00000409440		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374415	ENST00000374969		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374415	ENST00000339098		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374415	ENST00000374970		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-intron	ENST00000374415	ENST00000479558		TCGA	LD	LUSC	TCGA-33-4538-01A	ADAM23	chr2	207424842	+	CERKL	chr2	182482148	-
5CDS-5UTR	ENST00000227155	ENST00000520358		TCGA	LD	LUSC	TCGA-33-4538-01A	CD82	chr11	44626979	+	TSPAN18	chr11	44785976	+
5CDS-5UTR	ENST00000227155	ENST00000340160		TCGA	LD	LUSC	TCGA-33-4538-01A	CD82	chr11	44626979	+	TSPAN18	chr11	44785976	+
intron-5UTR	ENST00000342935	ENST00000520358		TCGA	LD	LUSC	TCGA-33-4538-01A	CD82	chr11	44626979	+	TSPAN18	chr11	44785976	+
intron-5UTR	ENST00000342935	ENST00000340160		TCGA	LD	LUSC	TCGA-33-4538-01A	CD82	chr11	44626979	+	TSPAN18	chr11	44785976	+
3UTR-5UTR	ENST00000530931	ENST00000520358		TCGA	LD	LUSC	TCGA-33-4538-01A	CD82	chr11	44626979	+	TSPAN18	chr11	44785976	+
3UTR-5UTR	ENST00000530931	ENST00000340160		TCGA	LD	LUSC	TCGA-33-4538-01A	CD82	chr11	44626979	+	TSPAN18	chr11	44785976	+
intron-3CDS	ENST00000336034	ENST00000222330		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000336034	ENST00000398249		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
5UTR-3CDS	ENST00000595337	ENST00000222330		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
5UTR-3CDS	ENST00000595337	ENST00000398249		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000593804	ENST00000222330		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000593804	ENST00000398249		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000596251	ENST00000222330		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000596251	ENST00000398249		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000598727	ENST00000222330		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
intron-3CDS	ENST00000598727	ENST00000398249		TCGA	LD	LUSC	TCGA-33-4547-01A	DEDD2	chr19	42724226	-	GSK3A	chr19	42737535	-
3UTR-3CDS	ENST00000569256	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
3UTR-3CDS	ENST00000569256	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
3UTR-5UTR	ENST00000569256	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
3UTR-intron	ENST00000569256	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
3UTR-intron	ENST00000569256	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000248098	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000248098	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-5UTR	ENST00000248098	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000248098	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000248098	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000562684	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000562684	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-5UTR	ENST00000562684	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000562684	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000562684	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000561516	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000561516	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-5UTR	ENST00000561516	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000561516	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000561516	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-3CDS	ENST00000382711	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-3CDS	ENST00000382711	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-5UTR	ENST00000382711	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-intron	ENST00000382711	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-intron	ENST00000382711	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000569765	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
Frame-shit	ENST00000569765	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-5UTR	ENST00000569765	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000569765	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
5CDS-intron	ENST00000569765	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-3CDS	ENST00000382710	ENST00000424542		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-3CDS	ENST00000382710	ENST00000432365		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-5UTR	ENST00000382710	ENST00000563587		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-intron	ENST00000382710	ENST00000565086		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-intron	ENST00000382710	ENST00000566198		TCGA	LD	LUSC	TCGA-33-4566-01A	HN1L	chr16	1728357	+	SLC9A3R2	chr16	2079583	+
intron-3CDS	ENST00000571688	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000413364	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000339430	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000381810	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
5UTR-3CDS	ENST00000570904	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000571459	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000572255	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000576036	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000574763	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000571976	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-3CDS	ENST00000574703	ENST00000601181		TCGA	LD	LUSC	TCGA-33-4566-01A	LITAF	chr16	11681007	-	CXCL17	chr19	42938008	-
intron-intron	ENST00000373710	ENST00000344147		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000373710	ENST00000479629		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000373710	ENST00000373714		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000373710	ENST00000546109		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000373710	ENST00000422613		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536859	ENST00000344147		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536859	ENST00000479629		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536859	ENST00000373714		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536859	ENST00000546109		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536859	ENST00000422613		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
5CDS-intron	ENST00000373709	ENST00000344147		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
5CDS-intron	ENST00000373709	ENST00000479629		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
5CDS-intron	ENST00000373709	ENST00000373714		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
5CDS-intron	ENST00000373709	ENST00000546109		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
5CDS-intron	ENST00000373709	ENST00000422613		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536384	ENST00000344147		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536384	ENST00000479629		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536384	ENST00000373714		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536384	ENST00000546109		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000536384	ENST00000422613		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000491976	ENST00000344147		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000491976	ENST00000479629		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000491976	ENST00000373714		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000491976	ENST00000546109		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-intron	ENST00000491976	ENST00000422613		TCGA	LD	LUSC	TCGA-33-4566-01A	SERINC2	chr1	31886151	+	ZCCHC17	chr1	31836695	+
intron-3CDS	ENST00000609084	ENST00000305877		TCGA	LD	LUSC	TCGA-33-4582-01A	CRYBB2P1	chr22	25853368	+	BCR	chr22	23595986	+
intron-3CDS	ENST00000609084	ENST00000359540		TCGA	LD	LUSC	TCGA-33-4582-01A	CRYBB2P1	chr22	25853368	+	BCR	chr22	23595986	+
intron-intron	ENST00000609084	ENST00000398512		TCGA	LD	LUSC	TCGA-33-4582-01A	CRYBB2P1	chr22	25853368	+	BCR	chr22	23595986	+
intron-intron	ENST00000609084	ENST00000436990		TCGA	LD	LUSC	TCGA-33-4582-01A	CRYBB2P1	chr22	25853368	+	BCR	chr22	23595986	+
In-frame	ENST00000338368	ENST00000607273		TCGA	LD	LUSC	TCGA-33-4582-01A	PRKDC	chr8	48824970	-	PRIM2	chr6	57244699	+
5CDS-3UTR	ENST00000338368	ENST00000389488		TCGA	LD	LUSC	TCGA-33-4582-01A	PRKDC	chr8	48824970	-	PRIM2	chr6	57244699	+
In-frame	ENST00000314191	ENST00000607273		TCGA	LD	LUSC	TCGA-33-4582-01A	PRKDC	chr8	48824970	-	PRIM2	chr6	57244699	+
5CDS-3UTR	ENST00000314191	ENST00000389488		TCGA	LD	LUSC	TCGA-33-4582-01A	PRKDC	chr8	48824970	-	PRIM2	chr6	57244699	+
5UTR-3CDS	ENST00000523565	ENST00000607273		TCGA	LD	LUSC	TCGA-33-4582-01A	PRKDC	chr8	48824970	-	PRIM2	chr6	57244699	+
5UTR-3UTR	ENST00000523565	ENST00000389488		TCGA	LD	LUSC	TCGA-33-4582-01A	PRKDC	chr8	48824970	-	PRIM2	chr6	57244699	+
In-frame	ENST00000343629	ENST00000261623		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-intron	ENST00000343629	ENST00000567174		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-intron	ENST00000343629	ENST00000569359		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-intron	ENST00000343629	ENST00000561972		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
Frame-shit	ENST00000535580	ENST00000261623		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-intron	ENST00000535580	ENST00000567174		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-intron	ENST00000535580	ENST00000569359		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-intron	ENST00000535580	ENST00000561972		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
intron-3CDS	ENST00000561807	ENST00000261623		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
intron-intron	ENST00000561807	ENST00000567174		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
intron-intron	ENST00000561807	ENST00000569359		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
intron-intron	ENST00000561807	ENST00000561972		TCGA	LD	LUSC	TCGA-33-4582-01A	TLDC1	chr16	84516198	-	CYBA	chr16	88709979	-
5CDS-5UTR	ENST00000376980	ENST00000449193		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
5CDS-intron	ENST00000376980	ENST00000444772		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
5CDS-5UTR	ENST00000376980	ENST00000487107		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000376946	ENST00000449193		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000376946	ENST00000444772		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000376946	ENST00000487107		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000483085	ENST00000449193		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
intron-intron	ENST00000483085	ENST00000444772		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
intron-5UTR	ENST00000483085	ENST00000487107		TCGA	LD	LUSC	TCGA-33-4583-01A	DNAJC1	chr10	22207708	-	SKIDA1	chr10	21812800	-
Frame-shit	ENST00000317568	ENST00000265465		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
Frame-shit	ENST00000317568	ENST00000541089		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
5CDS-intron	ENST00000317568	ENST00000534785		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000531296	ENST00000265465		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000531296	ENST00000541089		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
intron-intron	ENST00000531296	ENST00000534785		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000355991	ENST00000265465		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
intron-3CDS	ENST00000355991	ENST00000541089		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
intron-intron	ENST00000355991	ENST00000534785		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
Frame-shit	ENST00000416776	ENST00000265465		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
Frame-shit	ENST00000416776	ENST00000541089		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
5CDS-intron	ENST00000416776	ENST00000534785		TCGA	LD	LUSC	TCGA-33-4586-01A	FRMD8	chr11	65156999	+	POLA2	chr11	65049950	+
5UTR-3CDS	ENST00000393038	ENST00000305783		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000393038	ENST00000442346		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000537860	ENST00000305783		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000537860	ENST00000442346		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000409433	ENST00000305783		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000409433	ENST00000442346		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
intron-3CDS	ENST00000470557	ENST00000305783		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
intron-3CDS	ENST00000470557	ENST00000442346		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000579915	ENST00000305783		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
5UTR-3CDS	ENST00000579915	ENST00000442346		TCGA	LD	LUSC	TCGA-33-4586-01A	PTRH2	chr17	57784732	-	RNFT1	chr17	58035805	-
In-frame	ENST00000420843	ENST00000356136		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
In-frame	ENST00000420843	ENST00000528420		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000420843	ENST00000533454		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000420843	ENST00000531818		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000420843	ENST00000532130		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000420843	ENST00000539288		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000420843	ENST00000525872		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000420843	ENST00000538870		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
In-frame	ENST00000393505	ENST00000356136		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
In-frame	ENST00000393505	ENST00000528420		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000393505	ENST00000533454		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000393505	ENST00000531818		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000393505	ENST00000532130		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000393505	ENST00000539288		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000393505	ENST00000525872		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000393505	ENST00000538870		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
In-frame	ENST00000360025	ENST00000356136		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
In-frame	ENST00000360025	ENST00000528420		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000360025	ENST00000533454		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000360025	ENST00000531818		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000360025	ENST00000532130		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000360025	ENST00000539288		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000360025	ENST00000525872		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
5CDS-intron	ENST00000360025	ENST00000538870		TCGA	LD	LUSC	TCGA-33-4587-01A	ARRB1	chr11	75062632	-	UVRAG	chr11	75599873	+
Frame-shit	ENST00000229633	ENST00000265107		TCGA	LD	LUSC	TCGA-33-6737-01A	HINT3	chr6	126288150	+	WDR70	chr5	37516616	+
Frame-shit	ENST00000229633	ENST00000504564		TCGA	LD	LUSC	TCGA-33-6737-01A	HINT3	chr6	126288150	+	WDR70	chr5	37516616	+
5CDS-3UTR	ENST00000229633	ENST00000510699		TCGA	LD	LUSC	TCGA-33-6737-01A	HINT3	chr6	126288150	+	WDR70	chr5	37516616	+
5UTR-intron	ENST00000392491	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
5UTR-intron	ENST00000392491	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
5UTR-intron	ENST00000392491	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
5UTR-intron	ENST00000392491	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
5UTR-intron	ENST00000392491	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
3UTR-intron	ENST00000607474	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
3UTR-intron	ENST00000607474	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
3UTR-intron	ENST00000607474	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
3UTR-intron	ENST00000607474	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
3UTR-intron	ENST00000607474	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368452	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368452	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368452	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368452	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368452	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368448	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368448	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368448	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368448	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368448	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000392490	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000392490	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000392490	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000392490	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000392490	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000258014	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000258014	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000258014	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000258014	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000258014	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000354275	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000354275	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000354275	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000354275	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000354275	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368446	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368446	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368446	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368446	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368446	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122793186	+	HDDC2	chr6	125621805	-
5UTR-3CDS	ENST00000392491	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392491	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392491	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392491	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000607474	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000607474	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000607474	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000607474	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368452	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368452	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368452	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368452	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368448	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368448	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368448	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000368448	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392490	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392490	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392490	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5UTR-3CDS	ENST00000392490	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000258014	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000258014	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000258014	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000258014	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000354275	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000354275	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000354275	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000354275	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000368446	ENST00000398178		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000368446	ENST00000334268		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000368446	ENST00000546248		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
intron-3CDS	ENST00000368446	ENST00000542443		TCGA	LD	LUSC	TCGA-33-6737-01A	PKIB	chr6	122954512	+	TRDN	chr6	123851710	-
5CDS-intron	ENST00000521654	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000521654	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000521654	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000521654	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000521654	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000560949	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000560949	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000560949	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000560949	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
5CDS-intron	ENST00000560949	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000454842	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000454842	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000454842	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000454842	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000454842	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368414	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368414	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368414	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368414	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000368414	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000359704	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000359704	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000359704	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000359704	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000359704	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000275184	ENST00000608456		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000275184	ENST00000368377		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000275184	ENST00000608295		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000275184	ENST00000398153		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
intron-intron	ENST00000275184	ENST00000608284		TCGA	LD	LUSC	TCGA-33-6737-01A	RNF217	chr6	125284572	+	HDDC2	chr6	125621805	-
Frame-shit	ENST00000339697	ENST00000368416		TCGA	LD	LUSC	TCGA-33-6737-01A	SERINC1	chr6	122772809	-	NKAIN2	chr6	124676413	+
Frame-shit	ENST00000339697	ENST00000368417		TCGA	LD	LUSC	TCGA-33-6737-01A	SERINC1	chr6	122772809	-	NKAIN2	chr6	124676413	+
Frame-shit	ENST00000339697	ENST00000546092		TCGA	LD	LUSC	TCGA-33-6737-01A	SERINC1	chr6	122772809	-	NKAIN2	chr6	124676413	+
Frame-shit	ENST00000339697	ENST00000545433		TCGA	LD	LUSC	TCGA-33-6737-01A	SERINC1	chr6	122772809	-	NKAIN2	chr6	124676413	+
5CDS-3UTR	ENST00000339697	ENST00000476571		TCGA	LD	LUSC	TCGA-33-6737-01A	SERINC1	chr6	122772809	-	NKAIN2	chr6	124676413	+
5CDS-intron	ENST00000497547	ENST00000398081		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
5CDS-intron	ENST00000497547	ENST00000468090		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
5CDS-intron	ENST00000497547	ENST00000291565		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
5CDS-intron	ENST00000497547	ENST00000327574		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
5CDS-intron	ENST00000497547	ENST00000476313		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
5CDS-intron	ENST00000497547	ENST00000467908		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
3UTR-intron	ENST00000471909	ENST00000398081		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
3UTR-intron	ENST00000471909	ENST00000468090		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
3UTR-intron	ENST00000471909	ENST00000291565		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
3UTR-intron	ENST00000471909	ENST00000327574		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
3UTR-intron	ENST00000471909	ENST00000476313		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
3UTR-intron	ENST00000471909	ENST00000467908		TCGA	LD	LUSC	TCGA-33-6738-01A	RRP1	chr21	45217981	+	PDXK	chr21	45165960	+
5UTR-5UTR	ENST00000416067	ENST00000407886		TCGA	LD	LUSC	TCGA-33-AAS8-01A	TEKT4P2	chr21	9966322	-	TMEM211	chr22	25335418	-
5UTR-intron	ENST00000416067	ENST00000382744		TCGA	LD	LUSC	TCGA-33-AAS8-01A	TEKT4P2	chr21	9966322	-	TMEM211	chr22	25335418	-
5UTR-intron	ENST00000416067	ENST00000423535		TCGA	LD	LUSC	TCGA-33-AAS8-01A	TEKT4P2	chr21	9966322	-	TMEM211	chr22	25335418	-
In-frame	ENST00000309166	ENST00000526757		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-5UTR	ENST00000309166	ENST00000534127		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000309166	ENST00000313726		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-5UTR	ENST00000309166	ENST00000357665		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000309166	ENST00000530438		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000309166	ENST00000530991		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000309166	ENST00000526099		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000309166	ENST00000534278		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-5UTR	ENST00000309166	ENST00000531237		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
In-frame	ENST00000531090	ENST00000526757		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-5UTR	ENST00000531090	ENST00000534127		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000531090	ENST00000313726		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-5UTR	ENST00000531090	ENST00000357665		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000531090	ENST00000530438		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000531090	ENST00000530991		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000531090	ENST00000526099		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-intron	ENST00000531090	ENST00000534278		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
5CDS-5UTR	ENST00000531090	ENST00000531237		TCGA	LD	LUSC	TCGA-33-AASB-01A	NRIP3	chr11	9025309	-	ST5	chr11	8832882	-
In-frame	ENST00000286371	ENST00000264952		TCGA	LD	LUSC	TCGA-33-AASJ-01A	ATP1B3	chr3	141634862	+	GRK7	chr3	141535556	+
In-frame	ENST00000539728	ENST00000264952		TCGA	LD	LUSC	TCGA-33-AASJ-01A	ATP1B3	chr3	141634862	+	GRK7	chr3	141535556	+
intron-3CDS	ENST00000462082	ENST00000264952		TCGA	LD	LUSC	TCGA-33-AASJ-01A	ATP1B3	chr3	141634862	+	GRK7	chr3	141535556	+
intron-3CDS	ENST00000484727	ENST00000264952		TCGA	LD	LUSC	TCGA-33-AASJ-01A	ATP1B3	chr3	141634862	+	GRK7	chr3	141535556	+
5CDS-5UTR	ENST00000409003	ENST00000501396		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000409003	ENST00000502082		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000409003	ENST00000523825		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5CDS-intron	ENST00000409003	ENST00000502056		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000314727	ENST00000501396		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000314727	ENST00000502082		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000314727	ENST00000523825		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
intron-intron	ENST00000314727	ENST00000502056		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5UTR-5UTR	ENST00000527515	ENST00000501396		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5UTR-5UTR	ENST00000527515	ENST00000502082		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5UTR-5UTR	ENST00000527515	ENST00000523825		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5UTR-intron	ENST00000527515	ENST00000502056		TCGA	LD	LUSC	TCGA-33-AASJ-01A	SAMD12	chr8	119391799	-	CASC8	chr8	128302305	-
5UTR-intron	ENST00000438493	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000438493	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000438493	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000452682	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000452682	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000452682	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
3UTR-intron	ENST00000498586	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
3UTR-intron	ENST00000498586	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
3UTR-intron	ENST00000498586	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000430396	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000430396	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000430396	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000374087	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000374087	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000374087	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000414907	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000414907	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5UTR-intron	ENST00000414907	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000344348	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000344348	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000344348	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000374082	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000374082	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000374082	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000443446	ENST00000352690		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000443446	ENST00000283285		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
intron-intron	ENST00000443446	ENST00000438817		TCGA	LD	LUSC	TCGA-33-AASL-01A	NCOA4	chr10	51565296	-	CD96	chr3	111083360	+
5CDS-5UTR	ENST00000240617	ENST00000509114		TCGA	LD	LUSC	TCGA-33-AASL-01A	PLBD1	chr12	14688593	-	RPL30P11	chr12	14510520	-
Frame-shit	ENST00000367590	ENST00000434571		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-intron	ENST00000367590	ENST00000367579		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-intron	ENST00000367590	ENST00000282990		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-intron	ENST00000367590	ENST00000367580		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-3UTR	ENST00000367590	ENST00000438435		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
Frame-shit	ENST00000367589	ENST00000434571		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-intron	ENST00000367589	ENST00000367579		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-intron	ENST00000367589	ENST00000282990		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-intron	ENST00000367589	ENST00000367580		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
5CDS-3UTR	ENST00000367589	ENST00000438435		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
intron-3CDS	ENST00000467345	ENST00000434571		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
intron-intron	ENST00000467345	ENST00000367579		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
intron-intron	ENST00000467345	ENST00000282990		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
intron-intron	ENST00000467345	ENST00000367580		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
intron-3UTR	ENST00000467345	ENST00000438435		TCGA	LD	LUSC	TCGA-33-AASL-01A	XPR1	chr1	180601406	+	MR1	chr1	181019147	+
3UTR-3UTR	ENST00000465917	ENST00000465812		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
3UTR-3UTR	ENST00000465917	ENST00000409052		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000465917	ENST00000361779		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000465917	ENST00000259206		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000465917	ENST00000354115		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000465917	ENST00000409930		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-3UTR	ENST00000245796	ENST00000465812		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-3UTR	ENST00000245796	ENST00000409052		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000245796	ENST00000361779		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000245796	ENST00000259206		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000245796	ENST00000354115		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000245796	ENST00000409930		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-3UTR	ENST00000441564	ENST00000465812		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-3UTR	ENST00000441564	ENST00000409052		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000441564	ENST00000361779		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000441564	ENST00000259206		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000441564	ENST00000354115		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000441564	ENST00000409930		TCGA	LD	LUSC	TCGA-34-2600-01A	PSD4	chr2	113915112	+	IL1RN	chr2	113868693	+
intron-3CDS	ENST00000306726	ENST00000390241		TCGA	LD	LUSC	TCGA-34-2608-01A	PTPN9	chr15	75755803	-	IGKJ2	chr2	89161068	-
intron-3CDS	ENST00000564970	ENST00000390241		TCGA	LD	LUSC	TCGA-34-2608-01A	PTPN9	chr15	75755803	-	IGKJ2	chr2	89161068	-
intron-3CDS	ENST00000587394	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000587394	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000587962	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000587962	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000586608	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000586608	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000589097	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000589097	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000591099	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000591099	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000326631	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000326631	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000589791	ENST00000404279		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
intron-3CDS	ENST00000589791	ENST00000585527		TCGA	LD	LUSC	TCGA-34-5231-01A	PLEKHJ1	chr19	2235458	-	LINGO3	chr19	2290585	-
5UTR-intron	ENST00000367434	ENST00000439155		TCGA	LD	LUSC	TCGA-34-5232-01A	B3GALT2	chr1	193155149	-	CFH	chr1	196682865	+
5UTR-intron	ENST00000367434	ENST00000367429		TCGA	LD	LUSC	TCGA-34-5232-01A	B3GALT2	chr1	193155149	-	CFH	chr1	196682865	+
5UTR-intron	ENST00000367434	ENST00000496761		TCGA	LD	LUSC	TCGA-34-5232-01A	B3GALT2	chr1	193155149	-	CFH	chr1	196682865	+
5UTR-intron	ENST00000367434	ENST00000359637		TCGA	LD	LUSC	TCGA-34-5232-01A	B3GALT2	chr1	193155149	-	CFH	chr1	196682865	+
5CDS-5UTR	ENST00000392521	ENST00000538780		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5CDS-intron	ENST00000392521	ENST00000543653		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5CDS-intron	ENST00000392521	ENST00000358906		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5CDS-5UTR	ENST00000261833	ENST00000538780		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5CDS-intron	ENST00000261833	ENST00000543653		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5CDS-intron	ENST00000261833	ENST00000358906		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5UTR-5UTR	ENST00000537607	ENST00000538780		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5UTR-intron	ENST00000537607	ENST00000543653		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5UTR-intron	ENST00000537607	ENST00000358906		TCGA	LD	LUSC	TCGA-34-5232-01A	CIT	chr12	120204891	-	FAM222A	chr12	110181906	+
5UTR-3CDS	ENST00000538780	ENST00000257552		TCGA	LD	LUSC	TCGA-34-5232-01A	FAM222A	chr12	110152702	+	MSI1	chr12	120802558	-
5UTR-intron	ENST00000538780	ENST00000546622		TCGA	LD	LUSC	TCGA-34-5232-01A	FAM222A	chr12	110152702	+	MSI1	chr12	120802558	-
3UTR-3CDS	ENST00000543653	ENST00000257552		TCGA	LD	LUSC	TCGA-34-5232-01A	FAM222A	chr12	110152702	+	MSI1	chr12	120802558	-
3UTR-intron	ENST00000543653	ENST00000546622		TCGA	LD	LUSC	TCGA-34-5232-01A	FAM222A	chr12	110152702	+	MSI1	chr12	120802558	-
intron-3CDS	ENST00000358906	ENST00000257552		TCGA	LD	LUSC	TCGA-34-5232-01A	FAM222A	chr12	110152702	+	MSI1	chr12	120802558	-
intron-intron	ENST00000358906	ENST00000546622		TCGA	LD	LUSC	TCGA-34-5232-01A	FAM222A	chr12	110152702	+	MSI1	chr12	120802558	-
Frame-shit	ENST00000377560	ENST00000261313		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000377560	ENST00000542939		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
In-frame	ENST00000430131	ENST00000261313		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000430131	ENST00000542939		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
Frame-shit	ENST00000550722	ENST00000261313		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
5CDS-intron	ENST00000550722	ENST00000542939		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
intron-3CDS	ENST00000549141	ENST00000261313		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
intron-intron	ENST00000549141	ENST00000542939		TCGA	LD	LUSC	TCGA-34-5232-01A	HECTD4	chr12	112743868	-	PEBP1	chr12	118575844	+
intron-3UTR	ENST00000176643	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000176643	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000581518	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000395575	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000339618	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000579855	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000571163	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000584348		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000571335		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000436810		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000542886		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000457293		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000270570		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000575023		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
intron-3UTR	ENST00000574597	ENST00000395585		TCGA	LD	LUSC	TCGA-34-5236-01A	ALDH3A2	chr17	19558700	+	SLC47A1	chr17	19452948	+
Frame-shit	ENST00000283233	ENST00000309950		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
Frame-shit	ENST00000283233	ENST00000409042		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
intron-3CDS	ENST00000409187	ENST00000309950		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
intron-3CDS	ENST00000409187	ENST00000409042		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
5UTR-3CDS	ENST00000536771	ENST00000309950		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
5UTR-3CDS	ENST00000536771	ENST00000409042		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
Frame-shit	ENST00000409889	ENST00000309950		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
Frame-shit	ENST00000409889	ENST00000409042		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
5UTR-3CDS	ENST00000491563	ENST00000309950		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
5UTR-3CDS	ENST00000491563	ENST00000409042		TCGA	LD	LUSC	TCGA-34-5236-01A	CCDC148	chr2	159312927	-	DAPL1	chr2	159660794	+
5CDS-5UTR	ENST00000334256	ENST00000326448		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5CDS-intron	ENST00000334256	ENST00000483465		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5CDS-5UTR	ENST00000334256	ENST00000496589		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5CDS-5UTR	ENST00000334256	ENST00000477495		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-5UTR	ENST00000469804	ENST00000326448		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-intron	ENST00000469804	ENST00000483465		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-5UTR	ENST00000469804	ENST00000496589		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
5UTR-5UTR	ENST00000469804	ENST00000477495		TCGA	LD	LUSC	TCGA-34-5236-01A	KPNA4	chr3	160283002	-	IFT80	chr3	160102434	-
In-frame	ENST00000263388	ENST00000382376		TCGA	LD	LUSC	TCGA-34-5236-01A	NOTCH3	chr19	15278060	-	DEFB132	chr20	239718	+
intron-3CDS	ENST00000405486	ENST00000302279		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-intron	ENST00000405486	ENST00000342116		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3UTR	ENST00000405486	ENST00000524546		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-5UTR	ENST00000405486	ENST00000529687		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3CDS	ENST00000356244	ENST00000302279		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-intron	ENST00000356244	ENST00000342116		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3UTR	ENST00000356244	ENST00000524546		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-5UTR	ENST00000356244	ENST00000529687		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3CDS	ENST00000455915	ENST00000302279		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-intron	ENST00000455915	ENST00000342116		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3UTR	ENST00000455915	ENST00000524546		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-5UTR	ENST00000455915	ENST00000529687		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3CDS	ENST00000407260	ENST00000302279		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-intron	ENST00000407260	ENST00000342116		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-3UTR	ENST00000407260	ENST00000524546		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
intron-5UTR	ENST00000407260	ENST00000529687		TCGA	LD	LUSC	TCGA-34-5239-01A	RANGAP1	chr22	41681367	-	FNTA	chr8	42914235	+
In-frame	ENST00000310054	ENST00000262803		TCGA	LD	LUSC	TCGA-34-5240-01A	CYP2S1	chr19	41703833	+	UPF1	chr19	18976098	+
In-frame	ENST00000310054	ENST00000599848		TCGA	LD	LUSC	TCGA-34-5240-01A	CYP2S1	chr19	41703833	+	UPF1	chr19	18976098	+
5CDS-intron	ENST00000310054	ENST00000600310		TCGA	LD	LUSC	TCGA-34-5240-01A	CYP2S1	chr19	41703833	+	UPF1	chr19	18976098	+
intron-3CDS	ENST00000542619	ENST00000262803		TCGA	LD	LUSC	TCGA-34-5240-01A	CYP2S1	chr19	41703833	+	UPF1	chr19	18976098	+
intron-3CDS	ENST00000542619	ENST00000599848		TCGA	LD	LUSC	TCGA-34-5240-01A	CYP2S1	chr19	41703833	+	UPF1	chr19	18976098	+
intron-intron	ENST00000542619	ENST00000600310		TCGA	LD	LUSC	TCGA-34-5240-01A	CYP2S1	chr19	41703833	+	UPF1	chr19	18976098	+
In-frame	ENST00000252699	ENST00000537454		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
In-frame	ENST00000252699	ENST00000221891		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
Frame-shit	ENST00000252699	ENST00000586861		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
5CDS-intron	ENST00000252699	ENST00000589298		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
In-frame	ENST00000424234	ENST00000537454		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
In-frame	ENST00000424234	ENST00000221891		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
Frame-shit	ENST00000424234	ENST00000586861		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
5CDS-intron	ENST00000424234	ENST00000589298		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
In-frame	ENST00000390009	ENST00000537454		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
In-frame	ENST00000390009	ENST00000221891		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
Frame-shit	ENST00000390009	ENST00000586861		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
5CDS-intron	ENST00000390009	ENST00000589298		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
intron-3CDS	ENST00000497637	ENST00000537454		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
intron-3CDS	ENST00000497637	ENST00000221891		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
intron-3CDS	ENST00000497637	ENST00000586861		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
intron-intron	ENST00000497637	ENST00000589298		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	APLP1	chr19	36360569	+
In-frame	ENST00000252699	ENST00000592409		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000252699	ENST00000347900		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000252699	ENST00000360202		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000252699	ENST00000262625		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000424234	ENST00000592409		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000424234	ENST00000347900		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000424234	ENST00000360202		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000424234	ENST00000262625		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000390009	ENST00000592409		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000390009	ENST00000347900		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000390009	ENST00000360202		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
In-frame	ENST00000390009	ENST00000262625		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000497637	ENST00000592409		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000497637	ENST00000347900		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000497637	ENST00000360202		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
intron-3CDS	ENST00000497637	ENST00000262625		TCGA	LD	LUSC	TCGA-34-5241-01A	ACTN4	chr19	39138547	+	KIRREL2	chr19	36355550	+
Frame-shit	ENST00000536814	ENST00000376489		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
Frame-shit	ENST00000536814	ENST00000259205		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
Frame-shit	ENST00000439118	ENST00000376489		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
Frame-shit	ENST00000439118	ENST00000259205		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
In-frame	ENST00000361124	ENST00000376489		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
In-frame	ENST00000361124	ENST00000259205		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
Frame-shit	ENST00000542887	ENST00000376489		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
Frame-shit	ENST00000542887	ENST00000259205		TCGA	LD	LUSC	TCGA-34-5241-01A	ITPRIPL1	chr2	96993855	+	IL36G	chr2	113742417	+
5CDS-intron	ENST00000025301	ENST00000540693		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
5CDS-intron	ENST00000025301	ENST00000337343		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
5CDS-intron	ENST00000025301	ENST00000379274		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
5CDS-intron	ENST00000025301	ENST00000261491		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
5CDS-intron	ENST00000025301	ENST00000536612		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
5CDS-3UTR	ENST00000025301	ENST00000498255		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
5CDS-intron	ENST00000025301	ENST00000538674		TCGA	LD	LUSC	TCGA-34-5928-01A	AKAP11	chr13	42860535	+	DGKH	chr13	42826545	+
In-frame	ENST00000478654	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
In-frame	ENST00000478654	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000478654	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000478654	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000460911	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000460911	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000460911	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000460911	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000350995	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000350995	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000350995	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000350995	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000320356	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000320356	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000320356	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000320356	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000541220	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000541220	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000541220	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000541220	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
In-frame	ENST00000476773	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
In-frame	ENST00000476773	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000476773	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000476773	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000483967	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
Frame-shit	ENST00000483967	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000483967	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
5CDS-intron	ENST00000483967	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000536783	ENST00000406775		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-3CDS	ENST00000536783	ENST00000342771		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000536783	ENST00000403018		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
intron-intron	ENST00000536783	ENST00000489774		TCGA	LD	LUSC	TCGA-34-5928-01A	EZH2	chr7	148543589	-	AUTS2	chr7	70227856	+
In-frame	ENST00000376007	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000469577	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
In-frame	ENST00000376033	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000549037	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000551794	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000435971	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000485195	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000428775	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000550674	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000548373	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000439762	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000416335	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000473169	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000550109	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000550609	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000454306	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000468994	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000432252	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000551341	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000547457	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000383464	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000470109	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000383455	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000547056	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000549383	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000458561	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000466607	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000414956	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000547669	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000549768	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000430737	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000484613	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
intron-3CDS	ENST00000422962	ENST00000225964		TCGA	LD	LUSC	TCGA-34-5928-01A	PRRC2A	chr6	31602951	+	COL1A1	chr17	48267269	-
5UTR-3CDS	ENST00000248244	ENST00000397661		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000592199		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000587760		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000585575		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000360105		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000588228		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000587260		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000248244	ENST00000358552		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5UTR-3UTR	ENST00000248244	ENST00000588680		TCGA	LD	LUSC	TCGA-34-7107-01A	TICAM1	chr19	4831626	-	NFIX	chr19	13183861	+
5CDS-intron	ENST00000265594	ENST00000410534		TCGA	LD	LUSC	TCGA-34-8456-01A	MCCC1	chr3	182812347	-	SOX2-OT	chr3	180774485	+
5UTR-intron	ENST00000492597	ENST00000410534		TCGA	LD	LUSC	TCGA-34-8456-01A	MCCC1	chr3	182812347	-	SOX2-OT	chr3	180774485	+
5UTR-intron	ENST00000539926	ENST00000410534		TCGA	LD	LUSC	TCGA-34-8456-01A	MCCC1	chr3	182812347	-	SOX2-OT	chr3	180774485	+
intron-intron	ENST00000489909	ENST00000410534		TCGA	LD	LUSC	TCGA-34-8456-01A	MCCC1	chr3	182812347	-	SOX2-OT	chr3	180774485	+
5CDS-5UTR	ENST00000227756	ENST00000526757		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-5UTR	ENST00000227756	ENST00000534127		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-5UTR	ENST00000227756	ENST00000313726		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-5UTR	ENST00000227756	ENST00000357665		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-5UTR	ENST00000227756	ENST00000530438		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-intron	ENST00000227756	ENST00000530991		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-intron	ENST00000227756	ENST00000526099		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-intron	ENST00000227756	ENST00000534278		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5CDS-intron	ENST00000227756	ENST00000531237		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-5UTR	ENST00000526064	ENST00000526757		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-5UTR	ENST00000526064	ENST00000534127		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-5UTR	ENST00000526064	ENST00000313726		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-5UTR	ENST00000526064	ENST00000357665		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-5UTR	ENST00000526064	ENST00000530438		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-intron	ENST00000526064	ENST00000530991		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-intron	ENST00000526064	ENST00000526099		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-intron	ENST00000526064	ENST00000534278		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
5UTR-intron	ENST00000526064	ENST00000531237		TCGA	LD	LUSC	TCGA-34-A5IX-01A	GALNT18	chr11	11642906	-	ST5	chr11	8772272	-
intron-5UTR	ENST00000509990	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
intron-5UTR	ENST00000361059	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
intron-5UTR	ENST00000504203	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
intron-5UTR	ENST00000502929	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
intron-5UTR	ENST00000394800	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
intron-5UTR	ENST00000507197	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
5UTR-5UTR	ENST00000394805	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
5UTR-5UTR	ENST00000502499	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
5UTR-5UTR	ENST00000510056	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
5UTR-5UTR	ENST00000503811	ENST00000274710		TCGA	LD	LUSC	TCGA-34-A5IX-01A	MATR3	chr5	138629494	+	PSD2	chr5	139188976	+
5CDS-5UTR	ENST00000347330	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000347330	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000347330	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000347330	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000347330	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000347330	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000413209	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000413209	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000413209	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000413209	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000413209	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000413209	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000338641	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000338641	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000338641	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000338641	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000338641	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000338641	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403435	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403435	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403435	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403435	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000403435	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000403435	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361452	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361452	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361452	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361452	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000361452	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000361452	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403999	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403999	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403999	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000403999	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000403999	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000403999	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000334961	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000334961	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000334961	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000334961	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000334961	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000334961	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000353887	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000353887	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000353887	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000353887	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000353887	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000353887	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361166	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361166	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361166	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361166	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000361166	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000361166	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000397789	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000397789	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000397789	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000397789	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000397789	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000397789	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361676	ENST00000401950		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361676	ENST00000333027		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361676	ENST00000323630		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-5UTR	ENST00000361676	ENST00000351488		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-intron	ENST00000361676	ENST00000406629		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
5CDS-3UTR	ENST00000361676	ENST00000415511		TCGA	LD	LUSC	TCGA-34-A5IX-01A	NF2	chr22	30000101	+	MTMR3	chr22	30353025	+
In-frame	ENST00000389757	ENST00000454300		TCGA	LD	LUSC	TCGA-34-A5IX-01A	PKP4	chr2	159389828	+	TANC1	chr2	160080743	+
In-frame	ENST00000389757	ENST00000263635		TCGA	LD	LUSC	TCGA-34-A5IX-01A	PKP4	chr2	159389828	+	TANC1	chr2	160080743	+
In-frame	ENST00000389759	ENST00000454300		TCGA	LD	LUSC	TCGA-34-A5IX-01A	PKP4	chr2	159389828	+	TANC1	chr2	160080743	+
In-frame	ENST00000389759	ENST00000263635		TCGA	LD	LUSC	TCGA-34-A5IX-01A	PKP4	chr2	159389828	+	TANC1	chr2	160080743	+
intron-3CDS	ENST00000495123	ENST00000454300		TCGA	LD	LUSC	TCGA-34-A5IX-01A	PKP4	chr2	159389828	+	TANC1	chr2	160080743	+
intron-3CDS	ENST00000495123	ENST00000263635		TCGA	LD	LUSC	TCGA-34-A5IX-01A	PKP4	chr2	159389828	+	TANC1	chr2	160080743	+
In-frame	ENST00000367602	ENST00000263726		TCGA	LD	LUSC	TCGA-34-A5IX-01A	QSOX1	chr1	180145169	+	LHX4	chr1	180235528	+
In-frame	ENST00000367600	ENST00000263726		TCGA	LD	LUSC	TCGA-34-A5IX-01A	QSOX1	chr1	180145169	+	LHX4	chr1	180235528	+
Frame-shit	ENST00000604567	ENST00000319080		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000604567	ENST00000538698		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000604567	ENST00000377037		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000604567	ENST00000535996		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
Frame-shit	ENST00000542440	ENST00000319080		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000542440	ENST00000538698		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000542440	ENST00000377037		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000542440	ENST00000535996		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
Frame-shit	ENST00000267197	ENST00000319080		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000267197	ENST00000538698		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000267197	ENST00000377037		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000267197	ENST00000535996		TCGA	LD	LUSC	TCGA-34-A5IX-01A	SETD1B	chr12	122243122	+	MLXIP	chr12	122616839	+
5CDS-intron	ENST00000544604	ENST00000347330		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000413209		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000338641		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000403435		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000361452		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000403999		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000334961		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000353887		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000361166		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000397789		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000544604	ENST00000361676		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000347330		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000413209		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000338641		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000403435		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000361452		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000403999		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000334961		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000353887		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000361166		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000397789		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000332811	ENST00000361676		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000347330		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000413209		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000338641		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000403435		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000361452		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000403999		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000334961		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000353887		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000361166		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000397789		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000402174	ENST00000361676		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000347330		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000413209		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000338641		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000403435		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000361452		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000403999		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000334961		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000353887		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000361166		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000397789		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-intron	ENST00000406323	ENST00000361676		TCGA	LD	LUSC	TCGA-34-A5IX-01A	ZNRF3	chr22	29383189	+	NF2	chr22	30032740	+
5CDS-5UTR	ENST00000418917	ENST00000323523		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000418917	ENST00000403410		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-3UTR	ENST00000418917	ENST00000462884		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000490574	ENST00000323523		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000490574	ENST00000403410		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-3UTR	ENST00000490574	ENST00000462884		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000240851	ENST00000323523		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000240851	ENST00000403410		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-3UTR	ENST00000240851	ENST00000462884		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000476228	ENST00000323523		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-5UTR	ENST00000476228	ENST00000403410		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
5CDS-3UTR	ENST00000476228	ENST00000462884		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
intron-5UTR	ENST00000481203	ENST00000323523		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
intron-5UTR	ENST00000481203	ENST00000403410		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
intron-3UTR	ENST00000481203	ENST00000462884		TCGA	LD	LUSC	TCGA-37-3783-01A	TFG	chr3	100438902	+	TMEM45A	chr3	100274053	+
Frame-shit	ENST00000366607	ENST00000367817		TCGA	LD	LUSC	TCGA-37-3783-01A	TOMM20	chr1	235283133	-	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000467767	ENST00000367817		TCGA	LD	LUSC	TCGA-37-3783-01A	TOMM20	chr1	235283133	-	DPT	chr1	168683584	-
In-frame	ENST00000569600	ENST00000397498		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-intron	ENST00000569600	ENST00000573392		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-intron	ENST00000569600	ENST00000574938		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-5UTR	ENST00000569600	ENST00000570561		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-5UTR	ENST00000569600	ENST00000576135		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
In-frame	ENST00000219139	ENST00000397498		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-intron	ENST00000219139	ENST00000573392		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-intron	ENST00000219139	ENST00000574938		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-5UTR	ENST00000219139	ENST00000570561		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-5UTR	ENST00000219139	ENST00000576135		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
3UTR-3CDS	ENST00000569683	ENST00000397498		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
3UTR-intron	ENST00000569683	ENST00000573392		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
3UTR-intron	ENST00000569683	ENST00000574938		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
3UTR-5UTR	ENST00000569683	ENST00000570561		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
3UTR-5UTR	ENST00000569683	ENST00000576135		TCGA	LD	LUSC	TCGA-37-3792-01A	C16orf70	chr16	67154097	+	ARL16	chr17	79650156	-
5CDS-intron	ENST00000357847	ENST00000316649		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000357847	ENST00000367748		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000357847	ENST00000541547		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000357847	ENST00000468393		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000357847	ENST00000367746		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000344492	ENST00000316649		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000344492	ENST00000367748		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000344492	ENST00000541547		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000344492	ENST00000468393		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000344492	ENST00000367746		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000275235	ENST00000316649		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000275235	ENST00000367748		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000275235	ENST00000541547		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000275235	ENST00000468393		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000275235	ENST00000367746		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000367598	ENST00000316649		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000367598	ENST00000367748		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000367598	ENST00000541547		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000367598	ENST00000468393		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000367598	ENST00000367746		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000494282	ENST00000316649		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000494282	ENST00000367748		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000494282	ENST00000541547		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000494282	ENST00000468393		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
5CDS-intron	ENST00000494282	ENST00000367746		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
intron-intron	ENST00000367596	ENST00000316649		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
intron-intron	ENST00000367596	ENST00000367748		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
intron-intron	ENST00000367596	ENST00000541547		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
intron-intron	ENST00000367596	ENST00000468393		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
intron-intron	ENST00000367596	ENST00000367746		TCGA	LD	LUSC	TCGA-37-4129-01A	AIG1	chr6	143486320	+	IL20RA	chr6	137359268	-
In-frame	ENST00000368802	ENST00000607778		TCGA	LD	LUSC	TCGA-37-4129-01A	REV3L	chr6	111688318	-	GTF2H5	chr6	158613009	+
In-frame	ENST00000368805	ENST00000607778		TCGA	LD	LUSC	TCGA-37-4129-01A	REV3L	chr6	111688318	-	GTF2H5	chr6	158613009	+
Frame-shit	ENST00000435970	ENST00000607778		TCGA	LD	LUSC	TCGA-37-4129-01A	REV3L	chr6	111688318	-	GTF2H5	chr6	158613009	+
In-frame	ENST00000358835	ENST00000607778		TCGA	LD	LUSC	TCGA-37-4129-01A	REV3L	chr6	111688318	-	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000462119	ENST00000607778		TCGA	LD	LUSC	TCGA-37-4129-01A	REV3L	chr6	111688318	-	GTF2H5	chr6	158613009	+
3UTR-3CDS	ENST00000262460	ENST00000376862		TCGA	LD	LUSC	TCGA-37-4130-01A	GINS1	chr20	25426675	+	SYNDIG1	chr20	24645982	+
3UTR-intron	ENST00000262460	ENST00000482637		TCGA	LD	LUSC	TCGA-37-4130-01A	GINS1	chr20	25426675	+	SYNDIG1	chr20	24645982	+
3UTR-3CDS	ENST00000429262	ENST00000376862		TCGA	LD	LUSC	TCGA-37-4130-01A	GINS1	chr20	25426675	+	SYNDIG1	chr20	24645982	+
3UTR-intron	ENST00000429262	ENST00000482637		TCGA	LD	LUSC	TCGA-37-4130-01A	GINS1	chr20	25426675	+	SYNDIG1	chr20	24645982	+
intron-3CDS	ENST00000484893	ENST00000376862		TCGA	LD	LUSC	TCGA-37-4130-01A	GINS1	chr20	25426675	+	SYNDIG1	chr20	24645982	+
intron-intron	ENST00000484893	ENST00000482637		TCGA	LD	LUSC	TCGA-37-4130-01A	GINS1	chr20	25426675	+	SYNDIG1	chr20	24645982	+
Frame-shit	ENST00000290607	ENST00000300289		TCGA	LD	LUSC	TCGA-37-4132-01A	STARD9	chr15	42988078	+	PDIA3	chr15	44046022	+
5CDS-intron	ENST00000290607	ENST00000469684		TCGA	LD	LUSC	TCGA-37-4132-01A	STARD9	chr15	42988078	+	PDIA3	chr15	44046022	+
5CDS-intron	ENST00000290607	ENST00000538521		TCGA	LD	LUSC	TCGA-37-4132-01A	STARD9	chr15	42988078	+	PDIA3	chr15	44046022	+
Frame-shit	ENST00000264613	ENST00000289104		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
Frame-shit	ENST00000264613	ENST00000423968		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
5CDS-5UTR	ENST00000264613	ENST00000464896		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
5CDS-intron	ENST00000264613	ENST00000461114		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
5CDS-intron	ENST00000264613	ENST00000474559		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
intron-3CDS	ENST00000462336	ENST00000289104		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
intron-3CDS	ENST00000462336	ENST00000423968		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
intron-5UTR	ENST00000462336	ENST00000464896		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
intron-intron	ENST00000462336	ENST00000461114		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
intron-intron	ENST00000462336	ENST00000474559		TCGA	LD	LUSC	TCGA-37-4135-01A	CP	chr3	148939434	-	MRAS	chr3	138116166	+
5CDS-3UTR	ENST00000232165	ENST00000562678		TCGA	LD	LUSC	TCGA-37-4135-01A	UBE3A	chr15	25615713	-	DISC1FP1	chr11	90585784	+
5CDS-3UTR	ENST00000438097	ENST00000562678		TCGA	LD	LUSC	TCGA-37-4135-01A	UBE3A	chr15	25615713	-	DISC1FP1	chr11	90585784	+
5CDS-3UTR	ENST00000566215	ENST00000562678		TCGA	LD	LUSC	TCGA-37-4135-01A	UBE3A	chr15	25615713	-	DISC1FP1	chr11	90585784	+
5CDS-3UTR	ENST00000428984	ENST00000562678		TCGA	LD	LUSC	TCGA-37-4135-01A	UBE3A	chr15	25615713	-	DISC1FP1	chr11	90585784	+
5CDS-3UTR	ENST00000397954	ENST00000562678		TCGA	LD	LUSC	TCGA-37-4135-01A	UBE3A	chr15	25615713	-	DISC1FP1	chr11	90585784	+
Frame-shit	ENST00000181839	ENST00000223273		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000181839	ENST00000448268		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000181839	ENST00000432096		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
5CDS-3UTR	ENST00000181839	ENST00000469737		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000340829	ENST00000223273		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000340829	ENST00000448268		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000340829	ENST00000432096		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
5CDS-3UTR	ENST00000340829	ENST00000469737		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
3UTR-3CDS	ENST00000484589	ENST00000223273		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
3UTR-3CDS	ENST00000484589	ENST00000448268		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
3UTR-3CDS	ENST00000484589	ENST00000432096		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
3UTR-3UTR	ENST00000484589	ENST00000469737		TCGA	LD	LUSC	TCGA-37-5819-01A	CDK13	chr7	40087476	+	YAE1D1	chr7	39610105	+
5UTR-intron	ENST00000486187	ENST00000563294		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5UTR-intron	ENST00000486187	ENST00000442196		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5UTR-intron	ENST00000486187	ENST00000310958		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5UTR-intron	ENST00000486187	ENST00000425574		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5UTR-intron	ENST00000486187	ENST00000569205		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5CDS-intron	ENST00000359467	ENST00000563294		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5CDS-intron	ENST00000359467	ENST00000442196		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5CDS-intron	ENST00000359467	ENST00000310958		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5CDS-intron	ENST00000359467	ENST00000425574		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5CDS-intron	ENST00000359467	ENST00000569205		TCGA	LD	LUSC	TCGA-37-5819-01A	ZNF33B	chr10	43127377	-	CCPG1	chr15	55670574	-
5CDS-intron	ENST00000324331	ENST00000605917		TCGA	LD	LUSC	TCGA-37-A5EM-01A	FARS2	chr6	5431405	+	CASC15	chr6	22291107	+
5CDS-intron	ENST00000274680	ENST00000605917		TCGA	LD	LUSC	TCGA-37-A5EM-01A	FARS2	chr6	5431405	+	CASC15	chr6	22291107	+
5CDS-5UTR	ENST00000530927	ENST00000229922		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000530927	ENST00000489374		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000530927	ENST00000378990		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000530927	ENST00000493172		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000530927	ENST00000465994		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000380815	ENST00000229922		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000380815	ENST00000489374		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000380815	ENST00000378990		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000380815	ENST00000493172		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000380815	ENST00000465994		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
intron-5UTR	ENST00000467288	ENST00000229922		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
intron-5UTR	ENST00000467288	ENST00000489374		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
intron-5UTR	ENST00000467288	ENST00000378990		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
intron-5UTR	ENST00000467288	ENST00000493172		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
intron-5UTR	ENST00000467288	ENST00000465994		TCGA	LD	LUSC	TCGA-37-A5EM-01A	GMDS	chr6	2116005	-	CAP2	chr6	17421786	+
5CDS-5UTR	ENST00000011619	ENST00000504387		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000011619	ENST00000379446		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000011619	ENST00000379433		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000011619	ENST00000508800		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-5UTR	ENST00000469916	ENST00000504387		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-intron	ENST00000469916	ENST00000379446		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-intron	ENST00000469916	ENST00000379433		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-intron	ENST00000469916	ENST00000508800		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-5UTR	ENST00000539980	ENST00000504387		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-intron	ENST00000539980	ENST00000379446		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-intron	ENST00000539980	ENST00000379433		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
intron-intron	ENST00000539980	ENST00000508800		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000011619	ENST00000379350		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000379348		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000332995		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000482982		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000379345		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000457702		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000379335		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
5CDS-intron	ENST00000011619	ENST00000379329		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000379350		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000379348		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000332995		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000482982		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000379345		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000457702		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000379335		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000469916	ENST00000379329		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000379350		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000379348		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000332995		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000482982		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000379345		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000457702		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000379335		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
intron-intron	ENST00000539980	ENST00000379329		TCGA	LD	LUSC	TCGA-37-A5EM-01A	RANBP9	chr6	13697017	-	PHACTR1	chr6	12933865	+
In-frame	ENST00000321867	ENST00000261674		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ULK1	chr12	132399022	+	SFSWAP	chr12	132281723	+
In-frame	ENST00000321867	ENST00000541286		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ULK1	chr12	132399022	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000321867	ENST00000539506		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ULK1	chr12	132399022	+	SFSWAP	chr12	132281723	+
intron-3CDS	ENST00000540647	ENST00000261674		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ULK1	chr12	132399022	+	SFSWAP	chr12	132281723	+
intron-3CDS	ENST00000540647	ENST00000541286		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ULK1	chr12	132399022	+	SFSWAP	chr12	132281723	+
intron-3UTR	ENST00000540647	ENST00000539506		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ULK1	chr12	132399022	+	SFSWAP	chr12	132281723	+
In-frame	ENST00000590751	ENST00000240587		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000590751	ENST00000558569		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
Frame-shit	ENST00000328550	ENST00000240587		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000328550	ENST00000558569		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
Frame-shit	ENST00000593133	ENST00000240587		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000593133	ENST00000558569		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
Frame-shit	ENST00000451802	ENST00000240587		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000451802	ENST00000558569		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
In-frame	ENST00000358744	ENST00000240587		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000358744	ENST00000558569		TCGA	LD	LUSC	TCGA-37-A5EN-01A	ZNF571	chr19	38077569	-	TSHZ3	chr19	31770658	-
In-frame	ENST00000356239	ENST00000390665		TCGA	LD	LUSC	TCGA-39-5011-01A	AKAP9	chr7	91570461	+	PPP2R3B	chrY	272325	-
In-frame	ENST00000358100	ENST00000390665		TCGA	LD	LUSC	TCGA-39-5011-01A	AKAP9	chr7	91570461	+	PPP2R3B	chrY	272325	-
In-frame	ENST00000359028	ENST00000390665		TCGA	LD	LUSC	TCGA-39-5011-01A	AKAP9	chr7	91570461	+	PPP2R3B	chrY	272325	-
In-frame	ENST00000394564	ENST00000390665		TCGA	LD	LUSC	TCGA-39-5011-01A	AKAP9	chr7	91570461	+	PPP2R3B	chrY	272325	-
intron-3CDS	ENST00000491695	ENST00000390665		TCGA	LD	LUSC	TCGA-39-5011-01A	AKAP9	chr7	91570461	+	PPP2R3B	chrY	272325	-
In-frame	ENST00000249289	ENST00000310396		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000249289	ENST00000450913		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000249289	ENST00000423795		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000249289	ENST00000495036		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000249289	ENST00000340646		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
In-frame	ENST00000492758	ENST00000310396		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000492758	ENST00000450913		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000492758	ENST00000423795		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000492758	ENST00000495036		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
5CDS-intron	ENST00000492758	ENST00000340646		TCGA	LD	LUSC	TCGA-39-5011-01A	ATP6V1F	chr7	128503116	+	CPED1	chr7	120935494	+
intron-3CDS	ENST00000261891	ENST00000499869		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000261891	ENST00000382451		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000261891	ENST00000382452		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000261891	ENST00000515743		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000261891	ENST00000502702		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000457488	ENST00000499869		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000457488	ENST00000382451		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000457488	ENST00000382452		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000457488	ENST00000515743		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000457488	ENST00000502702		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000558069	ENST00000499869		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000558069	ENST00000382451		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000558069	ENST00000382452		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000558069	ENST00000515743		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000558069	ENST00000502702		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000558482	ENST00000499869		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000558482	ENST00000382451		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-3CDS	ENST00000558482	ENST00000382452		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000558482	ENST00000515743		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
intron-5UTR	ENST00000558482	ENST00000502702		TCGA	LD	LUSC	TCGA-39-5011-01A	DAPK2	chr15	64222631	-	WDR1	chr4	10086115	-
5UTR-intron	ENST00000539409	ENST00000488813		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000539409	ENST00000395879		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000539409	ENST00000395880		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000539409	ENST00000310564		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000539409	ENST00000223336		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-intron	ENST00000337682	ENST00000488813		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000337682	ENST00000395879		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000337682	ENST00000395880		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000337682	ENST00000310564		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000337682	ENST00000223336		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
intron-intron	ENST00000454658	ENST00000488813		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
intron-5UTR	ENST00000454658	ENST00000395879		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
intron-5UTR	ENST00000454658	ENST00000395880		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
intron-5UTR	ENST00000454658	ENST00000310564		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
intron-5UTR	ENST00000454658	ENST00000223336		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-intron	ENST00000395766	ENST00000488813		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000395766	ENST00000395879		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000395766	ENST00000395880		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000395766	ENST00000310564		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000395766	ENST00000223336		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-intron	ENST00000542983	ENST00000488813		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000542983	ENST00000395879		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000542983	ENST00000395880		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000542983	ENST00000310564		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000542983	ENST00000223336		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-intron	ENST00000536836	ENST00000488813		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000536836	ENST00000395879		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000536836	ENST00000395880		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000536836	ENST00000310564		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-5UTR	ENST00000536836	ENST00000223336		TCGA	LD	LUSC	TCGA-39-5011-01A	FAM60A	chr12	31478958	-	COA1	chr7	43688251	-
5UTR-3CDS	ENST00000379028	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379028	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379028	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379028	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379028	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3UTR	ENST00000379028	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000413765	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000413765	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000413765	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000413765	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000413765	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3UTR	ENST00000413765	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000351718	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000351718	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000351718	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000351718	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000351718	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3UTR	ENST00000351718	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379024	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379024	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379024	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379024	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379024	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3UTR	ENST00000379024	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379022	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379022	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379022	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3CDS	ENST00000379022	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-intron	ENST00000379022	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
5UTR-3UTR	ENST00000379022	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000425651	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000425651	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000425651	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000425651	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000425651	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3UTR	ENST00000425651	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000522550	ENST00000437600		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000522550	ENST00000292538		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000522550	ENST00000393824		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000522550	ENST00000547394		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000360264		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000425244		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000292535		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000549414		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000556210		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000550008		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-intron	ENST00000522550	ENST00000546411		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3UTR	ENST00000522550	ENST00000560541		TCGA	LD	LUSC	TCGA-39-5011-01A	NRCAM	chr7	107953109	-	CUX1	chr7	101921220	+
intron-3CDS	ENST00000534695	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
intron-3CDS	ENST00000534695	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
intron-3CDS	ENST00000534695	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
intron-3CDS	ENST00000534695	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
intron-3CDS	ENST00000534695	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
intron-intron	ENST00000534695	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000455725	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000455725	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
In-frame	ENST00000455725	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000455725	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000455725	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
5CDS-intron	ENST00000455725	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000531273	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000531273	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
In-frame	ENST00000531273	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000531273	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000531273	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
5CDS-intron	ENST00000531273	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000420461	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000420461	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
In-frame	ENST00000420461	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000420461	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000420461	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
5CDS-intron	ENST00000420461	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000378852	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000378852	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
In-frame	ENST00000378852	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000378852	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000378852	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
5CDS-intron	ENST00000378852	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000534600	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000534600	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
Frame-shit	ENST00000534600	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
In-frame	ENST00000534600	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
In-frame	ENST00000534600	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
5CDS-intron	ENST00000534600	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
3UTR-3CDS	ENST00000529334	ENST00000256999		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
3UTR-3CDS	ENST00000529334	ENST00000356696		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
3UTR-3CDS	ENST00000529334	ENST00000343844		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
3UTR-3CDS	ENST00000529334	ENST00000340334		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
3UTR-3CDS	ENST00000529334	ENST00000533034		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
3UTR-intron	ENST00000529334	ENST00000525629		TCGA	LD	LUSC	TCGA-39-5016-01A	API5	chr11	43357544	+	FOLH1	chr11	49168497	-
5CDS-intron	ENST00000448637	ENST00000310236		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000448637	ENST00000204604		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000448637	ENST00000450923		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000448637	ENST00000348986		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000448637	ENST00000482805		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-5UTR	ENST00000448637	ENST00000545352		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000312675	ENST00000310236		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000312675	ENST00000204604		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000312675	ENST00000450923		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000312675	ENST00000348986		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000312675	ENST00000482805		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-5UTR	ENST00000312675	ENST00000545352		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000543006	ENST00000310236		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000543006	ENST00000204604		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000543006	ENST00000450923		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000543006	ENST00000348986		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-intron	ENST00000543006	ENST00000482805		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
5CDS-5UTR	ENST00000543006	ENST00000545352		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-intron	ENST00000471917	ENST00000310236		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-intron	ENST00000471917	ENST00000204604		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-intron	ENST00000471917	ENST00000450923		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-intron	ENST00000471917	ENST00000348986		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-intron	ENST00000471917	ENST00000482805		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-5UTR	ENST00000471917	ENST00000545352		TCGA	LD	LUSC	TCGA-39-5019-01A	LPP	chr3	188202492	+	CHRD	chr3	184100606	+
intron-3CDS	ENST00000379825	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379825	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000309615	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000309615	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000397172	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000397172	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379817	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379817	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000436040	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000436040	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379819	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379819	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000468275	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000468275	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000463596	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000463596	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000476858	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000476858	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379813	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000379813	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000473270	ENST00000397149		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
intron-3CDS	ENST00000473270	ENST00000536631		TCGA	LD	LUSC	TCGA-39-5022-01A	APTX	chr9	33024998	-	SMU1	chr9	33048256	-
5CDS-3UTR	ENST00000409426	ENST00000461862		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000409426	ENST00000368905		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000441902	ENST00000461862		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000441902	ENST00000368905		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000368890	ENST00000461862		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000368890	ENST00000368905		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000368888	ENST00000461862		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
5CDS-3UTR	ENST00000368888	ENST00000368905		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
intron-3UTR	ENST00000464105	ENST00000461862		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
intron-3UTR	ENST00000464105	ENST00000368905		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
intron-3UTR	ENST00000414290	ENST00000461862		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
intron-3UTR	ENST00000414290	ENST00000368905		TCGA	LD	LUSC	TCGA-39-5024-01A	PIP5K1A	chr1	151171557	+	SCNM1	chr1	151139410	+
Frame-shit	ENST00000426496	ENST00000261745		TCGA	LD	LUSC	TCGA-39-5024-01A	PRRC2C	chr1	171556890	+	NAA25	chr12	112471183	-
Frame-shit	ENST00000392078	ENST00000261745		TCGA	LD	LUSC	TCGA-39-5024-01A	PRRC2C	chr1	171556890	+	NAA25	chr12	112471183	-
intron-3CDS	ENST00000476522	ENST00000261745		TCGA	LD	LUSC	TCGA-39-5024-01A	PRRC2C	chr1	171556890	+	NAA25	chr12	112471183	-
Frame-shit	ENST00000367742	ENST00000261745		TCGA	LD	LUSC	TCGA-39-5024-01A	PRRC2C	chr1	171556890	+	NAA25	chr12	112471183	-
Frame-shit	ENST00000338920	ENST00000261745		TCGA	LD	LUSC	TCGA-39-5024-01A	PRRC2C	chr1	171556890	+	NAA25	chr12	112471183	-
5CDS-3UTR	ENST00000256257	ENST00000343295		TCGA	LD	LUSC	TCGA-39-5024-01A	RNF122	chr8	33408562	-	IDO2	chr8	39821127	+
5CDS-3UTR	ENST00000256257	ENST00000502986		TCGA	LD	LUSC	TCGA-39-5024-01A	RNF122	chr8	33408562	-	IDO2	chr8	39821127	+
5CDS-3UTR	ENST00000256257	ENST00000389060		TCGA	LD	LUSC	TCGA-39-5024-01A	RNF122	chr8	33408562	-	IDO2	chr8	39821127	+
5UTR-3CDS	ENST00000374189	ENST00000402038		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
5UTR-intron	ENST00000374189	ENST00000492350		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-3CDS	ENST00000374182	ENST00000402038		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-intron	ENST00000374182	ENST00000492350		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-3CDS	ENST00000360332	ENST00000402038		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-intron	ENST00000360332	ENST00000492350		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-3CDS	ENST00000374174	ENST00000402038		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-intron	ENST00000374174	ENST00000492350		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-3CDS	ENST00000395611	ENST00000402038		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-intron	ENST00000395611	ENST00000492350		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-3CDS	ENST00000459755	ENST00000402038		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-intron	ENST00000459755	ENST00000492350		TCGA	LD	LUSC	TCGA-39-5027-01A	MAPK8	chr10	49514864	+	PARG	chr10	51093341	-
intron-3CDS	ENST00000370828	ENST00000461719		TCGA	LD	LUSC	TCGA-39-5029-01A	GPC4	chrX	132549021	-	IGHJ4	chr14	106330466	-
intron-3CDS	ENST00000535467	ENST00000461719		TCGA	LD	LUSC	TCGA-39-5029-01A	GPC4	chrX	132549021	-	IGHJ4	chr14	106330466	-
5CDS-intron	ENST00000542227	ENST00000555545		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000542227	ENST00000261245		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000542227	ENST00000539616		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000447296	ENST00000555545		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000447296	ENST00000261245		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000447296	ENST00000539616		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000246166	ENST00000555545		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000246166	ENST00000261245		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
5CDS-intron	ENST00000246166	ENST00000539616		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000555742	ENST00000555545		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000555742	ENST00000261245		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
intron-intron	ENST00000555742	ENST00000539616		TCGA	LD	LUSC	TCGA-39-5031-01A	FNTB	chr14	65494499	+	MNAT1	chr14	61434947	+
intron-3CDS	ENST00000535193	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
intron-intron	ENST00000535193	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
intron-3UTR	ENST00000535193	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000543771	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-intron	ENST00000543771	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000543771	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000381306	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-intron	ENST00000381306	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000381306	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000381309	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-intron	ENST00000381309	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000381309	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000442236	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-intron	ENST00000442236	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000442236	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
3UTR-3CDS	ENST00000489243	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
3UTR-intron	ENST00000489243	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
3UTR-3UTR	ENST00000489243	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000536108	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-intron	ENST00000536108	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000536108	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
intron-3CDS	ENST00000428870	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
intron-intron	ENST00000428870	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
intron-3UTR	ENST00000428870	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3CDS	ENST00000401787	ENST00000267843		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-intron	ENST00000401787	ENST00000560270		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5UTR-3UTR	ENST00000401787	ENST00000560704		TCGA	LD	LUSC	TCGA-39-5031-01A	KDM4C	chr9	6758203	+	FGF7	chr15	49775348	+
5CDS-5UTR	ENST00000336665	ENST00000250615		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
5CDS-intron	ENST00000336665	ENST00000392492		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
5CDS-5UTR	ENST00000304032	ENST00000250615		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
5CDS-intron	ENST00000304032	ENST00000392492		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
intron-5UTR	ENST00000409538	ENST00000250615		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
intron-intron	ENST00000409538	ENST00000392492		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
intron-5UTR	ENST00000428334	ENST00000250615		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
intron-intron	ENST00000428334	ENST00000392492		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
5CDS-5UTR	ENST00000409457	ENST00000250615		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
5CDS-intron	ENST00000409457	ENST00000392492		TCGA	LD	LUSC	TCGA-39-5034-01A	AGAP1	chr2	236403493	+	AANAT	chr17	74458398	+
3UTR-3CDS	ENST00000567216	ENST00000219481		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
3UTR-3CDS	ENST00000567216	ENST00000397710		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
3UTR-3CDS	ENST00000567216	ENST00000424398		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
3UTR-intron	ENST00000567216	ENST00000461947		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
5UTR-3CDS	ENST00000219611	ENST00000219481		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
5UTR-3CDS	ENST00000219611	ENST00000397710		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
5UTR-3CDS	ENST00000219611	ENST00000424398		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
5UTR-intron	ENST00000219611	ENST00000461947		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	DECR2	chr16	454956	+
3UTR-intron	ENST00000567216	ENST00000397722		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
3UTR-intron	ENST00000567216	ENST00000382940		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
3UTR-intron	ENST00000567216	ENST00000219479		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
3UTR-intron	ENST00000567216	ENST00000450036		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
5UTR-intron	ENST00000219611	ENST00000397722		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
5UTR-intron	ENST00000219611	ENST00000382940		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
5UTR-intron	ENST00000219611	ENST00000219479		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
5UTR-intron	ENST00000219611	ENST00000450036		TCGA	LD	LUSC	TCGA-39-5034-01A	CAPN15	chr16	578029	+	NME4	chr16	454956	+
In-frame	ENST00000328771	ENST00000404338		TCGA	LD	LUSC	TCGA-39-5034-01A	DHX34	chr19	47863327	+	ARHGAP35	chr19	47491246	+
5CDS-intron	ENST00000328771	ENST00000598548		TCGA	LD	LUSC	TCGA-39-5034-01A	DHX34	chr19	47863327	+	ARHGAP35	chr19	47491246	+
3UTR-3CDS	ENST00000471451	ENST00000404338		TCGA	LD	LUSC	TCGA-39-5034-01A	DHX34	chr19	47863327	+	ARHGAP35	chr19	47491246	+
3UTR-intron	ENST00000471451	ENST00000598548		TCGA	LD	LUSC	TCGA-39-5034-01A	DHX34	chr19	47863327	+	ARHGAP35	chr19	47491246	+
Frame-shit	ENST00000518529	ENST00000555449		TCGA	LD	LUSC	TCGA-39-5034-01A	SFTA3	chr14	36982318	-	SLC25A21	chr14	37153086	-
Frame-shit	ENST00000518529	ENST00000331299		TCGA	LD	LUSC	TCGA-39-5034-01A	SFTA3	chr14	36982318	-	SLC25A21	chr14	37153086	-
5CDS-intron	ENST00000518529	ENST00000557611		TCGA	LD	LUSC	TCGA-39-5034-01A	SFTA3	chr14	36982318	-	SLC25A21	chr14	37153086	-
5UTR-3CDS	ENST00000518987	ENST00000555449		TCGA	LD	LUSC	TCGA-39-5034-01A	SFTA3	chr14	36982318	-	SLC25A21	chr14	37153086	-
5UTR-3CDS	ENST00000518987	ENST00000331299		TCGA	LD	LUSC	TCGA-39-5034-01A	SFTA3	chr14	36982318	-	SLC25A21	chr14	37153086	-
5UTR-intron	ENST00000518987	ENST00000557611		TCGA	LD	LUSC	TCGA-39-5034-01A	SFTA3	chr14	36982318	-	SLC25A21	chr14	37153086	-
5UTR-5UTR	ENST00000477524	ENST00000487806		TCGA	LD	LUSC	TCGA-39-5034-01A	TTLL7	chr1	84464614	-	GNG5	chr1	84967653	-
5UTR-5UTR	ENST00000477524	ENST00000370645		TCGA	LD	LUSC	TCGA-39-5034-01A	TTLL7	chr1	84464614	-	GNG5	chr1	84967653	-
5UTR-5UTR	ENST00000477524	ENST00000370641		TCGA	LD	LUSC	TCGA-39-5034-01A	TTLL7	chr1	84464614	-	GNG5	chr1	84967653	-
5UTR-5UTR	ENST00000260505	ENST00000487806		TCGA	LD	LUSC	TCGA-39-5034-01A	TTLL7	chr1	84464614	-	GNG5	chr1	84967653	-
5UTR-5UTR	ENST00000260505	ENST00000370645		TCGA	LD	LUSC	TCGA-39-5034-01A	TTLL7	chr1	84464614	-	GNG5	chr1	84967653	-
5UTR-5UTR	ENST00000260505	ENST00000370641		TCGA	LD	LUSC	TCGA-39-5034-01A	TTLL7	chr1	84464614	-	GNG5	chr1	84967653	-
3UTR-3CDS	ENST00000474476	ENST00000372224		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
3UTR-3UTR	ENST00000474476	ENST00000493027		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
3UTR-3UTR	ENST00000474476	ENST00000372218		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
3UTR-5UTR	ENST00000474476	ENST00000372222		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
3UTR-5UTR	ENST00000474476	ENST00000372217		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
Frame-shit	ENST00000371218	ENST00000372224		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-3UTR	ENST00000371218	ENST00000493027		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-3UTR	ENST00000371218	ENST00000372218		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-5UTR	ENST00000371218	ENST00000372222		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-5UTR	ENST00000371218	ENST00000372217		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
Frame-shit	ENST00000303721	ENST00000372224		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-3UTR	ENST00000303721	ENST00000493027		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-3UTR	ENST00000303721	ENST00000372218		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-5UTR	ENST00000303721	ENST00000372222		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-5UTR	ENST00000303721	ENST00000372217		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
Frame-shit	ENST00000371212	ENST00000372224		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-3UTR	ENST00000371212	ENST00000493027		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-3UTR	ENST00000371212	ENST00000372218		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-5UTR	ENST00000371212	ENST00000372222		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
5CDS-5UTR	ENST00000371212	ENST00000372217		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
intron-3CDS	ENST00000371210	ENST00000372224		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
intron-3UTR	ENST00000371210	ENST00000493027		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
intron-3UTR	ENST00000371210	ENST00000372218		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
intron-5UTR	ENST00000371210	ENST00000372222		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
intron-5UTR	ENST00000371210	ENST00000372217		TCGA	LD	LUSC	TCGA-39-5035-01A	FGGY	chr1	59844509	+	KIF2C	chr1	45213056	+
Frame-shit	ENST00000327892	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
In-frame	ENST00000327892	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000327892	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000435534	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000435534	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435534	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
Frame-shit	ENST00000330914	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
In-frame	ENST00000330914	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000330914	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
Frame-shit	ENST00000396389	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
In-frame	ENST00000396389	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396389	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
Frame-shit	ENST00000396384	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
In-frame	ENST00000396384	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
5CDS-intron	ENST00000396384	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000421473	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000421473	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000421473	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000549614	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000549614	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549614	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000413547	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000413547	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000413547	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000419551	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000419551	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419551	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000454620	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000454620	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454620	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000422674	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000422674	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422674	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000548023	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000548023	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000548023	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000435546	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000435546	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000435546	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000420400	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000420400	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420400	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000453350	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000453350	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000453350	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000419792	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000419792	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000419792	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000547690	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000547690	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547690	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000436335	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000436335	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436335	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000425136	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000425136	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425136	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000444441	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000444441	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000444441	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000422650	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000422650	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000422650	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000547695	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000547695	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000547695	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000454454	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000454454	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000454454	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000412136	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000412136	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000412136	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000446385	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000446385	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000446385	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000383564	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000383564	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000383564	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000551208	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000551208	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000551208	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000400531	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000400531	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400531	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000400534	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000400534	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400534	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000400530	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000400530	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000400530	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000436628	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000436628	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000436628	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000549902	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000549902	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549902	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000437490	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000437490	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000437490	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000426754	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000426754	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000426754	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000425102	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000425102	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000425102	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000432462	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000432462	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000432462	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000549654	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000549654	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000549654	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000427480	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000427480	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000427480	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000424734	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000424734	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000424734	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000420618	ENST00000376406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3CDS	ENST00000420618	ENST00000376405		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000494654		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000427406		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000547874		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000551460		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000547700		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000481026		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000552522		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000420019		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000548112		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000550004		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000548103		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000473187		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000552474		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000420320		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000552263		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000551204		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000549428		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000495325		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000547681		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000449153		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000553048		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000546487		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000553196		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000494715		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000547353		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000383566		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000548827		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000552349		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000550408		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000481547		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000550688		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000440369		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000547047		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000548542		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000548248		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000482029		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000550500		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000435664		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000548433		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000551740		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000467476		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-intron	ENST00000420618	ENST00000546539		TCGA	LD	LUSC	TCGA-39-5035-01A	TUBB	chr6	30691539	+	MDC1	chr6	30668350	-
intron-3UTR	ENST00000377560	ENST00000288670		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000377560	ENST00000475377		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-intron	ENST00000377560	ENST00000497192		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000430131	ENST00000288670		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000430131	ENST00000475377		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-intron	ENST00000430131	ENST00000497192		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000550722	ENST00000288670		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000550722	ENST00000475377		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-intron	ENST00000550722	ENST00000497192		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000549141	ENST00000288670		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-3UTR	ENST00000549141	ENST00000475377		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
intron-intron	ENST00000549141	ENST00000497192		TCGA	LD	LUSC	TCGA-39-5037-01A	HECTD4	chr12	112664273	-	FMNL2	chr2	153506193	+
Frame-shit	ENST00000361084	ENST00000368279		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
5CDS-intron	ENST00000361084	ENST00000368273		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
5CDS-intron	ENST00000361084	ENST00000368277		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
5CDS-intron	ENST00000361084	ENST00000565805		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
5CDS-intron	ENST00000361084	ENST00000567140		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
3UTR-3CDS	ENST00000487325	ENST00000368279		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
3UTR-intron	ENST00000487325	ENST00000368273		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
3UTR-intron	ENST00000487325	ENST00000368277		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
3UTR-intron	ENST00000487325	ENST00000565805		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
3UTR-intron	ENST00000487325	ENST00000567140		TCGA	LD	LUSC	TCGA-39-5037-01A	RAB25	chr1	156031234	+	PMF1	chr1	156202111	+
5CDS-5UTR	ENST00000217159	ENST00000371419		TCGA	LD	LUSC	TCGA-39-5037-01A	SLCO4A1	chr20	61288602	+	PFDN4	chr20	52824552	+
5CDS-intron	ENST00000217159	ENST00000487129		TCGA	LD	LUSC	TCGA-39-5037-01A	SLCO4A1	chr20	61288602	+	PFDN4	chr20	52824552	+
5CDS-5UTR	ENST00000370507	ENST00000371419		TCGA	LD	LUSC	TCGA-39-5037-01A	SLCO4A1	chr20	61288602	+	PFDN4	chr20	52824552	+
5CDS-intron	ENST00000370507	ENST00000487129		TCGA	LD	LUSC	TCGA-39-5037-01A	SLCO4A1	chr20	61288602	+	PFDN4	chr20	52824552	+
intron-5UTR	ENST00000470412	ENST00000371419		TCGA	LD	LUSC	TCGA-39-5037-01A	SLCO4A1	chr20	61288602	+	PFDN4	chr20	52824552	+
intron-intron	ENST00000470412	ENST00000487129		TCGA	LD	LUSC	TCGA-39-5037-01A	SLCO4A1	chr20	61288602	+	PFDN4	chr20	52824552	+
5UTR-3CDS	ENST00000408952	ENST00000344843		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5UTR-5UTR	ENST00000408952	ENST00000493287		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5UTR-intron	ENST00000408952	ENST00000482352		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000400809	ENST00000344843		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000400809	ENST00000493287		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-intron	ENST00000400809	ENST00000482352		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-3CDS	ENST00000505849	ENST00000344843		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-5UTR	ENST00000505849	ENST00000493287		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
intron-intron	ENST00000505849	ENST00000482352		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
Frame-shit	ENST00000408918	ENST00000344843		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000408918	ENST00000493287		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-intron	ENST00000408918	ENST00000482352		TCGA	LD	LUSC	TCGA-39-5039-01A	CCNL2	chr1	1333613	-	MRPL20	chr1	1337636	-
5CDS-5UTR	ENST00000341697	ENST00000561294		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
5CDS-intron	ENST00000341697	ENST00000345896		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
5CDS-5UTR	ENST00000341697	ENST00000271688		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
5CDS-5UTR	ENST00000341697	ENST00000368954		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
intron-5UTR	ENST00000479820	ENST00000561294		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
intron-intron	ENST00000479820	ENST00000345896		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
intron-5UTR	ENST00000479820	ENST00000271688		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
intron-5UTR	ENST00000479820	ENST00000368954		TCGA	LD	LUSC	TCGA-39-5040-01A	SEMA6C	chr1	151111901	-	CERS2	chr1	150941567	-
intron-3CDS	ENST00000360605	ENST00000262643		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
intron-3CDS	ENST00000360605	ENST00000357943		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
intron-5UTR	ENST00000360605	ENST00000444983		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
Frame-shit	ENST00000542441	ENST00000262643		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
Frame-shit	ENST00000542441	ENST00000357943		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
5CDS-5UTR	ENST00000542441	ENST00000444983		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
5UTR-3CDS	ENST00000392271	ENST00000262643		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
5UTR-3CDS	ENST00000392271	ENST00000357943		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
5UTR-5UTR	ENST00000392271	ENST00000444983		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
In-frame	ENST00000312051	ENST00000262643		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
In-frame	ENST00000312051	ENST00000357943		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
5CDS-5UTR	ENST00000312051	ENST00000444983		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
intron-3CDS	ENST00000574176	ENST00000262643		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
intron-3CDS	ENST00000574176	ENST00000357943		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
intron-5UTR	ENST00000574176	ENST00000444983		TCGA	LD	LUSC	TCGA-39-5040-01A	URI1	chr19	30433571	+	CCNE1	chr19	30303596	+
Frame-shit	ENST00000376705	ENST00000338825		TCGA	LD	LUSC	TCGA-43-2576-01A	HS6ST3	chr13	96743823	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000376705	ENST00000520657		TCGA	LD	LUSC	TCGA-43-2576-01A	HS6ST3	chr13	96743823	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000471981	ENST00000367723		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
intron-3CDS	ENST00000471981	ENST00000608151		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
intron-3CDS	ENST00000471981	ENST00000610051		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
intron-3CDS	ENST00000471981	ENST00000263688		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
Frame-shit	ENST00000367829	ENST00000367723		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
Frame-shit	ENST00000367829	ENST00000608151		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
Frame-shit	ENST00000367829	ENST00000610051		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
Frame-shit	ENST00000367829	ENST00000263688		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
In-frame	ENST00000271375	ENST00000367723		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
In-frame	ENST00000271375	ENST00000608151		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
In-frame	ENST00000271375	ENST00000610051		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
In-frame	ENST00000271375	ENST00000263688		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
3UTR-3CDS	ENST00000367825	ENST00000367723		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
3UTR-3CDS	ENST00000367825	ENST00000608151		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
3UTR-3CDS	ENST00000367825	ENST00000610051		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
3UTR-3CDS	ENST00000367825	ENST00000263688		TCGA	LD	LUSC	TCGA-43-2576-01A	SFT2D2	chr1	168208398	+	SUCO	chr1	172520652	+
Frame-shit	ENST00000356205	ENST00000368575		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000356205	ENST00000462680		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
Frame-shit	ENST00000368623	ENST00000368575		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000368623	ENST00000462680		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
In-frame	ENST00000368621	ENST00000368575		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000368621	ENST00000462680		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
Frame-shit	ENST00000310483	ENST00000368575		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000310483	ENST00000462680		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
intron-3CDS	ENST00000537590	ENST00000368575		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
intron-5UTR	ENST00000537590	ENST00000462680		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
intron-3CDS	ENST00000461071	ENST00000368575		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
intron-5UTR	ENST00000461071	ENST00000462680		TCGA	LD	LUSC	TCGA-43-2576-01A	SLC39A1	chr1	153934696	-	RAB13	chr1	153957257	-
Frame-shit	ENST00000257915	ENST00000603798		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000257915	ENST00000398453		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000257915	ENST00000603864		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000257915	ENST00000605627		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000257915	ENST00000603838		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000257915	ENST00000604188		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000307660	ENST00000603798		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000307660	ENST00000398453		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000307660	ENST00000603864		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000307660	ENST00000605627		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000307660	ENST00000603838		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000307660	ENST00000604188		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000549867	ENST00000603798		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000549867	ENST00000398453		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000549867	ENST00000603864		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000549867	ENST00000605627		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000549867	ENST00000603838		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000549867	ENST00000604188		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000548115	ENST00000603798		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000548115	ENST00000398453		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
Frame-shit	ENST00000548115	ENST00000603864		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000548115	ENST00000605627		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000548115	ENST00000603838		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
5CDS-5UTR	ENST00000548115	ENST00000604188		TCGA	LD	LUSC	TCGA-43-2576-01A	TFCP2	chr12	51566084	-	SMAGP	chr12	51640615	-
intron-3CDS	ENST00000476233	ENST00000345317		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
intron-3CDS	ENST00000476233	ENST00000539623		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
intron-5UTR	ENST00000476233	ENST00000489977		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
In-frame	ENST00000354667	ENST00000345317		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
In-frame	ENST00000354667	ENST00000539623		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
5CDS-5UTR	ENST00000354667	ENST00000489977		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
In-frame	ENST00000356674	ENST00000345317		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
In-frame	ENST00000356674	ENST00000539623		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
5CDS-5UTR	ENST00000356674	ENST00000489977		TCGA	LD	LUSC	TCGA-43-2578-01A	HNRNPA2B1	chr7	26235467	-	SKAP2	chr7	26729981	-
Frame-shit	ENST00000436909	ENST00000299192		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
Frame-shit	ENST00000436909	ENST00000285767		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
5CDS-3UTR	ENST00000436909	ENST00000564942		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
Frame-shit	ENST00000561678	ENST00000299192		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
Frame-shit	ENST00000561678	ENST00000285767		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
5CDS-3UTR	ENST00000561678	ENST00000564942		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
Frame-shit	ENST00000357464	ENST00000299192		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
Frame-shit	ENST00000357464	ENST00000285767		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
5CDS-3UTR	ENST00000357464	ENST00000564942		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
intron-3CDS	ENST00000573002	ENST00000299192		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
intron-3CDS	ENST00000573002	ENST00000285767		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
intron-3UTR	ENST00000573002	ENST00000564942		TCGA	LD	LUSC	TCGA-43-2578-01A	PAPD5	chr16	50188170	+	HEATR3	chr16	50117848	+
In-frame	ENST00000285208	ENST00000543418		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000285208	ENST00000392833		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000285208	ENST00000362010		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000285208	ENST00000392832		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000285208	ENST00000469007		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000285208	ENST00000494677		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000285208	ENST00000537559		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000285208	ENST00000468233		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000543906	ENST00000543418		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000543906	ENST00000392833		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000543906	ENST00000362010		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
In-frame	ENST00000543906	ENST00000392832		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000543906	ENST00000469007		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000543906	ENST00000494677		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000543906	ENST00000537559		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000543906	ENST00000468233		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000469959	ENST00000543418		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000469959	ENST00000392833		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000469959	ENST00000362010		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-3CDS	ENST00000469959	ENST00000392832		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000469959	ENST00000469007		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000469959	ENST00000494677		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000469959	ENST00000537559		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
intron-intron	ENST00000469959	ENST00000468233		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000486858	ENST00000543418		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000486858	ENST00000392833		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000486858	ENST00000362010		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000486858	ENST00000392832		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000486858	ENST00000469007		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000486858	ENST00000494677		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000486858	ENST00000537559		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
5CDS-intron	ENST00000486858	ENST00000468233		TCGA	LD	LUSC	TCGA-43-2578-01A	RAB6B	chr3	133583428	-	VEPH1	chr3	157188318	-
Frame-shit	ENST00000548256	ENST00000336061		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
Frame-shit	ENST00000548256	ENST00000542104		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000548256	ENST00000540088		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000551420	ENST00000336061		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000551420	ENST00000542104		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5UTR-intron	ENST00000551420	ENST00000540088		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
Frame-shit	ENST00000300209	ENST00000336061		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
Frame-shit	ENST00000300209	ENST00000542104		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000300209	ENST00000540088		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
intron-3CDS	ENST00000552307	ENST00000336061		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
intron-3CDS	ENST00000552307	ENST00000542104		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
intron-intron	ENST00000552307	ENST00000540088		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
Frame-shit	ENST00000333012	ENST00000336061		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
Frame-shit	ENST00000333012	ENST00000542104		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000333012	ENST00000540088		TCGA	LD	LUSC	TCGA-43-2581-01A	METTL21B	chr12	58166911	+	RASSF3	chr12	65078567	+
5CDS-3UTR	ENST00000416426	ENST00000570618		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000416426	ENST00000434041		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000416426	ENST00000575698		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000416426	ENST00000575960		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000416426	ENST00000571246		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000416426	ENST00000450673		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-3UTR	ENST00000284073	ENST00000570618		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000284073	ENST00000434041		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000284073	ENST00000575698		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000284073	ENST00000575960		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000284073	ENST00000571246		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000284073	ENST00000450673		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-3UTR	ENST00000322684	ENST00000570618		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000322684	ENST00000434041		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000322684	ENST00000575698		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000322684	ENST00000575960		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000322684	ENST00000571246		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-intron	ENST00000322684	ENST00000450673		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-3UTR	ENST00000442934	ENST00000570618		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000442934	ENST00000434041		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000442934	ENST00000575698		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000442934	ENST00000575960		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000442934	ENST00000571246		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000442934	ENST00000450673		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-3UTR	ENST00000579180	ENST00000570618		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579180	ENST00000434041		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579180	ENST00000575698		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579180	ENST00000575960		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579180	ENST00000571246		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579180	ENST00000450673		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-3UTR	ENST00000579505	ENST00000570618		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579505	ENST00000434041		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579505	ENST00000575698		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579505	ENST00000575960		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579505	ENST00000571246		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
intron-intron	ENST00000579505	ENST00000450673		TCGA	LD	LUSC	TCGA-43-2581-01A	MSI2	chr17	55339553	+	ARL17B	chr17	44352784	-
5CDS-5UTR	ENST00000592782	ENST00000393196		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000592782	ENST00000336097		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000592782	ENST00000480143		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000592782	ENST00000511355		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000592782	ENST00000013034		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000393196		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000336097		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000480143		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000511355		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
5CDS-5UTR	ENST00000258960	ENST00000013034		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000393196		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000336097		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000480143		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000511355		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
3UTR-5UTR	ENST00000590114	ENST00000013034		TCGA	LD	LUSC	TCGA-43-2581-01A	NMT1	chr17	43138828	+	NME1	chr17	49233012	+
Frame-shit	ENST00000419071	ENST00000228606		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
5CDS-5UTR	ENST00000419071	ENST00000546496		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
Frame-shit	ENST00000268835	ENST00000228606		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
5CDS-5UTR	ENST00000268835	ENST00000546496		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
Frame-shit	ENST00000536323	ENST00000228606		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
5CDS-5UTR	ENST00000536323	ENST00000546496		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
Frame-shit	ENST00000542013	ENST00000228606		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
5CDS-5UTR	ENST00000542013	ENST00000546496		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
intron-3CDS	ENST00000575337	ENST00000228606		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
intron-5UTR	ENST00000575337	ENST00000546496		TCGA	LD	LUSC	TCGA-43-2581-01A	PRPSAP2	chr17	18827297	+	CYP27B1	chr12	58159282	-
5CDS-5UTR	ENST00000327490	ENST00000585421		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000327490	ENST00000536189		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000327490	ENST00000262768		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000327490	ENST00000586057		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000589240	ENST00000585421		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000589240	ENST00000536189		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000589240	ENST00000262768		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
5CDS-5UTR	ENST00000589240	ENST00000586057		TCGA	LD	LUSC	TCGA-43-2581-01A	UBALD2	chr17	74262050	+	TIMP2	chr17	76870001	-
In-frame	ENST00000260600	ENST00000380649		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
5CDS-intron	ENST00000260600	ENST00000457468		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
5CDS-intron	ENST00000260600	ENST00000461025		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
intron-3CDS	ENST00000405392	ENST00000380649		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
intron-intron	ENST00000405392	ENST00000457468		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
intron-intron	ENST00000405392	ENST00000461025		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
intron-3CDS	ENST00000450524	ENST00000380649		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
intron-intron	ENST00000450524	ENST00000457468		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
intron-intron	ENST00000450524	ENST00000461025		TCGA	LD	LUSC	TCGA-43-3394-01A	ADCY3	chr2	25141182	-	HADHA	chr2	26417507	-
5CDS-5UTR	ENST00000579662	ENST00000556126		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000579662	ENST00000579469		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000339591	ENST00000556126		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000339591	ENST00000579469		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000200181	ENST00000556126		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000200181	ENST00000579469		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000450894	ENST00000556126		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000450894	ENST00000579469		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000449880	ENST00000556126		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000449880	ENST00000579469		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
3UTR-5UTR	ENST00000584558	ENST00000556126		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
3UTR-5UTR	ENST00000584558	ENST00000579469		TCGA	LD	LUSC	TCGA-43-3394-01A	ITGB4	chr17	73729773	+	SMIM6	chr17	73642735	+
5UTR-3CDS	ENST00000266070	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000266070	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000266070	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-3CDS	ENST00000395343	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000395343	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000395343	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-3CDS	ENST00000395340	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000395340	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000395340	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-3CDS	ENST00000395335	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000395335	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000395335	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-3CDS	ENST00000370371	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000370371	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000370371	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-3CDS	ENST00000370368	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000370368	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000370368	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-3CDS	ENST00000354665	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000354665	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000354665	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-3CDS	ENST00000370366	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000370366	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
intron-5UTR	ENST00000370366	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-3CDS	ENST00000266071	ENST00000316084		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000266071	ENST00000486733		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5UTR-5UTR	ENST00000266071	ENST00000373626		TCGA	LD	LUSC	TCGA-43-3920-01A	DIDO1	chr20	61569148	-	RPS4X	chrX	71495574	-
5CDS-intron	ENST00000418389	ENST00000588267		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000418389	ENST00000592859		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000418389	ENST00000586293		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000418389	ENST00000397902		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-5UTR	ENST00000418389	ENST00000589038		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000592634	ENST00000588267		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000592634	ENST00000592859		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000592634	ENST00000586293		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000592634	ENST00000397902		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-5UTR	ENST00000592634	ENST00000589038		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000308961	ENST00000588267		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000308961	ENST00000592859		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000308961	ENST00000586293		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-intron	ENST00000308961	ENST00000397902		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
5CDS-5UTR	ENST00000308961	ENST00000589038		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000591160	ENST00000588267		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000591160	ENST00000592859		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000591160	ENST00000586293		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-intron	ENST00000591160	ENST00000397902		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-5UTR	ENST00000591160	ENST00000589038		TCGA	LD	LUSC	TCGA-43-3920-01A	NDUFA11	chr19	5896464	-	ZNF846	chr19	9898486	-
intron-3CDS	ENST00000517997	ENST00000400105		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000517997	ENST00000317931		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000517997	ENST00000284898		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000517997	ENST00000400104		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
intron-3CDS	ENST00000517997	ENST00000535782		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
intron-intron	ENST00000517997	ENST00000578677		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000457458	ENST00000400105		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000457458	ENST00000317931		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000457458	ENST00000284898		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000457458	ENST00000400104		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000457458	ENST00000535782		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
5CDS-intron	ENST00000457458	ENST00000578677		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000357227	ENST00000400105		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000357227	ENST00000317931		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000357227	ENST00000284898		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000357227	ENST00000400104		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000357227	ENST00000535782		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
5CDS-intron	ENST00000357227	ENST00000578677		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000518022	ENST00000400105		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000518022	ENST00000317931		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000518022	ENST00000284898		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000518022	ENST00000400104		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000518022	ENST00000535782		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
5CDS-intron	ENST00000518022	ENST00000578677		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000276052	ENST00000400105		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000276052	ENST00000317931		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000276052	ENST00000284898		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000276052	ENST00000400104		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000276052	ENST00000535782		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
5CDS-intron	ENST00000276052	ENST00000578677		TCGA	LD	LUSC	TCGA-43-5668-01A	CDK16	chrX	47086102	+	L3MBTL4	chr18	6093527	-
In-frame	ENST00000412331	ENST00000406386		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000412331	ENST00000407319		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000412331	ENST00000403663		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000381683	ENST00000406386		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000381683	ENST00000407319		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000381683	ENST00000403663		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000406934	ENST00000406386		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000406934	ENST00000407319		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000406934	ENST00000403663		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000476955	ENST00000406386		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000476955	ENST00000407319		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
intron-3CDS	ENST00000476955	ENST00000403663		TCGA	LD	LUSC	TCGA-43-5668-01A	EIF3L	chr22	38274178	+	TRIOBP	chr22	38147779	+
In-frame	ENST00000490103	ENST00000261267		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000490103	ENST00000549690		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000490103	ENST00000548839		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
Frame-shit	ENST00000397871	ENST00000261267		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000397871	ENST00000549690		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000397871	ENST00000548839		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
In-frame	ENST00000397872	ENST00000261267		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000397872	ENST00000549690		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000397872	ENST00000548839		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
Frame-shit	ENST00000397873	ENST00000261267		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000397873	ENST00000549690		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
5CDS-intron	ENST00000397873	ENST00000548839		TCGA	LD	LUSC	TCGA-43-5668-01A	THOC5	chr22	29913018	-	LYZ	chr12	69746000	+
3UTR-intron	ENST00000463837	ENST00000064780		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
3UTR-intron	ENST00000463837	ENST00000393580		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
5CDS-intron	ENST00000356786	ENST00000064780		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
5CDS-intron	ENST00000356786	ENST00000393580		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
5UTR-intron	ENST00000301897	ENST00000064780		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
5UTR-intron	ENST00000301897	ENST00000393580		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
5CDS-intron	ENST00000359902	ENST00000064780		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
5CDS-intron	ENST00000359902	ENST00000393580		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64120333	+	RELT	chr11	73105042	+
3UTR-3CDS	ENST00000463837	ENST00000328404		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
3UTR-3CDS	ENST00000463837	ENST00000539943		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
Frame-shit	ENST00000356786	ENST00000328404		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
In-frame	ENST00000356786	ENST00000539943		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
5UTR-3CDS	ENST00000301897	ENST00000328404		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
5UTR-3CDS	ENST00000301897	ENST00000539943		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
Frame-shit	ENST00000359902	ENST00000328404		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
In-frame	ENST00000359902	ENST00000539943		TCGA	LD	LUSC	TCGA-43-5670-01A	CCDC88B	chr11	64119858	+	TEX40	chr11	64072015	+
5UTR-3CDS	ENST00000256413	ENST00000261326		TCGA	LD	LUSC	TCGA-43-5670-01A	CTIF	chr18	46065683	+	MOCOS	chr18	33828885	+
5UTR-intron	ENST00000256413	ENST00000588132		TCGA	LD	LUSC	TCGA-43-5670-01A	CTIF	chr18	46065683	+	MOCOS	chr18	33828885	+
5UTR-3CDS	ENST00000382998	ENST00000261326		TCGA	LD	LUSC	TCGA-43-5670-01A	CTIF	chr18	46065683	+	MOCOS	chr18	33828885	+
5UTR-intron	ENST00000382998	ENST00000588132		TCGA	LD	LUSC	TCGA-43-5670-01A	CTIF	chr18	46065683	+	MOCOS	chr18	33828885	+
intron-3CDS	ENST00000592658	ENST00000261326		TCGA	LD	LUSC	TCGA-43-5670-01A	CTIF	chr18	46065683	+	MOCOS	chr18	33828885	+
intron-intron	ENST00000592658	ENST00000588132		TCGA	LD	LUSC	TCGA-43-5670-01A	CTIF	chr18	46065683	+	MOCOS	chr18	33828885	+
intron-3CDS	ENST00000341217	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000341217	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000581407	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000581407	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000582266	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000582266	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000452648	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000452648	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000582059	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000582059	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000583953	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
intron-3CDS	ENST00000583953	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000577682	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000577682	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000583522	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000583522	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000581381	ENST00000292090		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5UTR-3CDS	ENST00000581381	ENST00000394933		TCGA	LD	LUSC	TCGA-43-5670-01A	FAM222B	chr17	27169700	-	TLCD1	chr17	27051911	-
5CDS-5UTR	ENST00000348697	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000348697	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000348697	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000348697	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000348697	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000348697	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000348697	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000348697	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000402984	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000402984	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000262722	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000262722	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000327858	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000327858	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000442170	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000442170	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000340923	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000340923	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000599470		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000321944		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000358301		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-intron	ENST00000476366	ENST00000597766		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000593690		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000599386		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000435673		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000476366	ENST00000360442		TCGA	LD	LUSC	TCGA-43-5670-01A	FBLN1	chr22	45946495	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000309212	ENST00000341832		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000309212	ENST00000340677		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000309212	ENST00000407249		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000309212	ENST00000317673		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000342753	ENST00000341832		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000342753	ENST00000340677		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000342753	ENST00000407249		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000342753	ENST00000317673		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000445648	ENST00000341832		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000445648	ENST00000340677		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000445648	ENST00000407249		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
5CDS-intron	ENST00000445648	ENST00000317673		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
intron-intron	ENST00000477278	ENST00000341832		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
intron-intron	ENST00000477278	ENST00000340677		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
intron-intron	ENST00000477278	ENST00000407249		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
intron-intron	ENST00000477278	ENST00000317673		TCGA	LD	LUSC	TCGA-43-5670-01A	MXRA8	chr1	1293836	-	CDK11B	chr1	1588948	-
intron-3CDS	ENST00000064780	ENST00000328404		TCGA	LD	LUSC	TCGA-43-5670-01A	RELT	chr11	73105194	+	TEX40	chr11	64072015	+
intron-3CDS	ENST00000064780	ENST00000539943		TCGA	LD	LUSC	TCGA-43-5670-01A	RELT	chr11	73105194	+	TEX40	chr11	64072015	+
intron-3CDS	ENST00000393580	ENST00000328404		TCGA	LD	LUSC	TCGA-43-5670-01A	RELT	chr11	73105194	+	TEX40	chr11	64072015	+
intron-3CDS	ENST00000393580	ENST00000539943		TCGA	LD	LUSC	TCGA-43-5670-01A	RELT	chr11	73105194	+	TEX40	chr11	64072015	+
5UTR-5UTR	ENST00000447063	ENST00000528712		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000447063	ENST00000335135		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000447063	ENST00000532059		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000524591	ENST00000528712		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000524591	ENST00000335135		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000524591	ENST00000532059		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
3UTR-5UTR	ENST00000528335	ENST00000528712		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
3UTR-5UTR	ENST00000528335	ENST00000335135		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
3UTR-5UTR	ENST00000528335	ENST00000532059		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
intron-5UTR	ENST00000400069	ENST00000528712		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
intron-5UTR	ENST00000400069	ENST00000335135		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
intron-5UTR	ENST00000400069	ENST00000532059		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000528753	ENST00000528712		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000528753	ENST00000335135		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
5UTR-5UTR	ENST00000528753	ENST00000532059		TCGA	LD	LUSC	TCGA-43-6143-01A	KIAA1456	chr8	12848540	+	GATA4	chr8	11606428	+
Frame-shit	ENST00000380934	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380934	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380934	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380934	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000380934	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380959	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380959	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380959	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380959	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000380959	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380953	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380953	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380953	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380953	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000380953	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397575	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397575	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397575	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397575	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000397575	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397581	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397581	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397581	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397581	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000397581	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397579	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397579	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397579	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000397579	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000397579	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000543693	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000543693	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000543693	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000543693	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000543693	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380924	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380924	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380924	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
Frame-shit	ENST00000380924	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5CDS-5UTR	ENST00000380924	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
intron-3CDS	ENST00000380921	ENST00000422223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
intron-3CDS	ENST00000380921	ENST00000380881		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
intron-3CDS	ENST00000380921	ENST00000380880		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
intron-3CDS	ENST00000380921	ENST00000380894		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
intron-5UTR	ENST00000380921	ENST00000486223		TCGA	LD	LUSC	TCGA-43-6143-01A	NFIB	chr9	14146688	-	FREM1	chr9	14756444	-
5UTR-3CDS	ENST00000299853	ENST00000567004		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000299853	ENST00000542527		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000299853	ENST00000569656		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000299853	ENST00000562695		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000564209	ENST00000567004		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000564209	ENST00000542527		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000564209	ENST00000569656		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000564209	ENST00000562695		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000418581	ENST00000567004		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000418581	ENST00000542527		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000418581	ENST00000569656		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000418581	ENST00000562695		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000359210	ENST00000567004		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000359210	ENST00000542527		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000359210	ENST00000569656		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5UTR-3CDS	ENST00000359210	ENST00000562695		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000567004		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000542527		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000569656		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
intron-3CDS	ENST00000564256	ENST00000562695		TCGA	LD	LUSC	TCGA-43-6143-01A	POLR3E	chr16	22308858	+	C16orf52	chr16	22086808	+
5CDS-5UTR	ENST00000544604	ENST00000425759		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000544604	ENST00000292733		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000544604	ENST00000542773		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000544604	ENST00000263205		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000544604	ENST00000406969		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000544604	ENST00000382974		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000544604	ENST00000541476		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5CDS-intron	ENST00000544604	ENST00000478831		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000425759		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000292733		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000542773		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000263205		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000406969		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000382974		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-5UTR	ENST00000332811	ENST00000541476		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
5UTR-intron	ENST00000332811	ENST00000478831		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000425759		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000292733		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000542773		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000263205		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000406969		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000382974		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000402174	ENST00000541476		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-intron	ENST00000402174	ENST00000478831		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000425759		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000292733		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000542773		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000263205		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000406969		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000382974		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406323	ENST00000541476		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
intron-intron	ENST00000406323	ENST00000478831		TCGA	LD	LUSC	TCGA-43-6143-01A	ZNRF3	chr22	29280054	+	MED15	chr22	20891404	+
Frame-shit	ENST00000262428	ENST00000288368		TCGA	LD	LUSC	TCGA-43-6770-01A	COTL1	chr16	84651107	-	PREX2	chr8	69103957	+
5CDS-intron	ENST00000262428	ENST00000529398		TCGA	LD	LUSC	TCGA-43-6770-01A	COTL1	chr16	84651107	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000567278	ENST00000288368		TCGA	LD	LUSC	TCGA-43-6770-01A	COTL1	chr16	84651107	-	PREX2	chr8	69103957	+
intron-intron	ENST00000567278	ENST00000529398		TCGA	LD	LUSC	TCGA-43-6770-01A	COTL1	chr16	84651107	-	PREX2	chr8	69103957	+
intron-3CDS	ENST00000564057	ENST00000288368		TCGA	LD	LUSC	TCGA-43-6770-01A	COTL1	chr16	84651107	-	PREX2	chr8	69103957	+
intron-intron	ENST00000564057	ENST00000529398		TCGA	LD	LUSC	TCGA-43-6770-01A	COTL1	chr16	84651107	-	PREX2	chr8	69103957	+
5CDS-intron	ENST00000043402	ENST00000472200		TCGA	LD	LUSC	TCGA-43-6770-01A	RTN4R	chr22	20255594	-	SLC35G2	chr3	136573285	+
5CDS-5UTR	ENST00000043402	ENST00000446465		TCGA	LD	LUSC	TCGA-43-6770-01A	RTN4R	chr22	20255594	-	SLC35G2	chr3	136573285	+
5CDS-5UTR	ENST00000043402	ENST00000393079		TCGA	LD	LUSC	TCGA-43-6770-01A	RTN4R	chr22	20255594	-	SLC35G2	chr3	136573285	+
intron-intron	ENST00000469601	ENST00000472200		TCGA	LD	LUSC	TCGA-43-6770-01A	RTN4R	chr22	20255594	-	SLC35G2	chr3	136573285	+
intron-5UTR	ENST00000469601	ENST00000446465		TCGA	LD	LUSC	TCGA-43-6770-01A	RTN4R	chr22	20255594	-	SLC35G2	chr3	136573285	+
intron-5UTR	ENST00000469601	ENST00000393079		TCGA	LD	LUSC	TCGA-43-6770-01A	RTN4R	chr22	20255594	-	SLC35G2	chr3	136573285	+
Frame-shit	ENST00000253925	ENST00000539229		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-intron	ENST00000253925	ENST00000316367		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-intron	ENST00000253925	ENST00000342456		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-intron	ENST00000253925	ENST00000007633		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-3UTR	ENST00000253925	ENST00000434449		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
Frame-shit	ENST00000389547	ENST00000539229		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-intron	ENST00000389547	ENST00000316367		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-intron	ENST00000389547	ENST00000342456		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-intron	ENST00000389547	ENST00000007633		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5CDS-3UTR	ENST00000389547	ENST00000434449		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
intron-3CDS	ENST00000530548	ENST00000539229		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
intron-intron	ENST00000530548	ENST00000316367		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
intron-intron	ENST00000530548	ENST00000342456		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
intron-intron	ENST00000530548	ENST00000007633		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
intron-3UTR	ENST00000530548	ENST00000434449		TCGA	LD	LUSC	TCGA-43-6771-01A	PPFIA1	chr11	70189998	+	ALDH3B1	chr11	67795217	+
5UTR-5UTR	ENST00000393799	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
3UTR-5UTR	ENST00000530427	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000393800	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000534534	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000524845	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000265637	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000524904	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000393801	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000265636	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000529710	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
intron-5UTR	ENST00000527403	ENST00000311956		TCGA	LD	LUSC	TCGA-43-6771-01A	PPP6R3	chr11	68228295	+	ARHGAP1	chr11	46717706	-
In-frame	ENST00000556611	ENST00000280979		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000556611	ENST00000557354		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000556611	ENST00000557272		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000556611	ENST00000554449		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
In-frame	ENST00000539826	ENST00000280979		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000539826	ENST00000557354		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000539826	ENST00000557272		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000539826	ENST00000554449		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-3CDS	ENST00000396582	ENST00000280979		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-intron	ENST00000396582	ENST00000557354		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-intron	ENST00000396582	ENST00000557272		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-intron	ENST00000396582	ENST00000554449		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
In-frame	ENST00000432921	ENST00000280979		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000432921	ENST00000557354		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000432921	ENST00000557272		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000432921	ENST00000554449		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
In-frame	ENST00000345122	ENST00000280979		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000345122	ENST00000557354		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000345122	ENST00000557272		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000345122	ENST00000554449		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-3CDS	ENST00000433497	ENST00000280979		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-intron	ENST00000433497	ENST00000557354		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-intron	ENST00000433497	ENST00000557272		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
intron-intron	ENST00000433497	ENST00000554449		TCGA	LD	LUSC	TCGA-43-7656-01A	ARHGAP5	chr14	32563592	+	AKAP6	chr14	33242884	+
5CDS-intron	ENST00000389794	ENST00000366595		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
5CDS-intron	ENST00000389794	ENST00000264187		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
5CDS-intron	ENST00000389793	ENST00000366595		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
5CDS-intron	ENST00000389793	ENST00000264187		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
5CDS-intron	ENST00000536965	ENST00000366595		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
5CDS-intron	ENST00000536965	ENST00000264187		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
intron-intron	ENST00000473037	ENST00000366595		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
intron-intron	ENST00000473037	ENST00000264187		TCGA	LD	LUSC	TCGA-43-7656-01A	LYST	chr1	235976271	-	NID1	chr1	236175343	-
In-frame	ENST00000344771	ENST00000555003		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000344771	ENST00000441545		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000344771	ENST00000378817		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000344771	ENST00000318041		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
Frame-shit	ENST00000344771	ENST00000478802		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000344771	ENST00000602473		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000395059	ENST00000555003		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000395059	ENST00000441545		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000395059	ENST00000378817		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000395059	ENST00000318041		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
Frame-shit	ENST00000395059	ENST00000478802		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000395059	ENST00000602473		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000262518	ENST00000555003		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000262518	ENST00000441545		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000262518	ENST00000378817		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000262518	ENST00000318041		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
Frame-shit	ENST00000262518	ENST00000478802		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
In-frame	ENST00000262518	ENST00000602473		TCGA	LD	LUSC	TCGA-43-7658-01A	SRCAP	chr16	30725032	+	IL11RA	chr9	34655215	+
5UTR-5UTR	ENST00000450434	ENST00000461988		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000450434	ENST00000419840		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000450434	ENST00000394893		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
5UTR-intron	ENST00000450434	ENST00000475509		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
5UTR-intron	ENST00000450434	ENST00000545601		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
5UTR-intron	ENST00000450434	ENST00000450476		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
5UTR-intron	ENST00000450434	ENST00000439269		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-5UTR	ENST00000463766	ENST00000461988		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-5UTR	ENST00000463766	ENST00000419840		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-5UTR	ENST00000463766	ENST00000394893		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-intron	ENST00000463766	ENST00000475509		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-intron	ENST00000463766	ENST00000545601		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-intron	ENST00000463766	ENST00000450476		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-intron	ENST00000463766	ENST00000439269		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000323819	ENST00000461988		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000323819	ENST00000419840		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000323819	ENST00000394893		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000323819	ENST00000475509		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000323819	ENST00000545601		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000323819	ENST00000450476		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000323819	ENST00000439269		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000430211	ENST00000461988		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000430211	ENST00000419840		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000430211	ENST00000394893		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000430211	ENST00000475509		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000430211	ENST00000545601		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000430211	ENST00000450476		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000430211	ENST00000439269		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000447409	ENST00000461988		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000447409	ENST00000419840		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000447409	ENST00000394893		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000447409	ENST00000475509		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000447409	ENST00000545601		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000447409	ENST00000450476		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000447409	ENST00000439269		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000437796	ENST00000461988		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000437796	ENST00000419840		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-5UTR	ENST00000437796	ENST00000394893		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000437796	ENST00000475509		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000437796	ENST00000545601		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000437796	ENST00000450476		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
intron-intron	ENST00000437796	ENST00000439269		TCGA	LD	LUSC	TCGA-43-7658-01A	TRIM73	chr7	75024777	+	POR	chr7	75583307	+
3UTR-3CDS	ENST00000570884	ENST00000449359		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
3UTR-3UTR	ENST00000570884	ENST00000564441		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
3UTR-3UTR	ENST00000570884	ENST00000441236		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
3UTR-intron	ENST00000570884	ENST00000348497		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
3UTR-intron	ENST00000570884	ENST00000339507		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3CDS	ENST00000570495	ENST00000449359		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000570495	ENST00000564441		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000570495	ENST00000441236		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000570495	ENST00000348497		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000570495	ENST00000339507		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3CDS	ENST00000563169	ENST00000449359		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000563169	ENST00000564441		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000563169	ENST00000441236		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000563169	ENST00000348497		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000563169	ENST00000339507		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3CDS	ENST00000564323	ENST00000449359		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000564323	ENST00000564441		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000564323	ENST00000441236		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000564323	ENST00000348497		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000564323	ENST00000339507		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3CDS	ENST00000398253	ENST00000449359		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000398253	ENST00000564441		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-3UTR	ENST00000398253	ENST00000441236		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000398253	ENST00000348497		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
intron-intron	ENST00000398253	ENST00000339507		TCGA	LD	LUSC	TCGA-43-7658-01A	ZFP90	chr16	68564237	+	PRMT7	chr16	68362969	+
Frame-shit	ENST00000358823	ENST00000380525		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
In-frame	ENST00000358823	ENST00000397111		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
Frame-shit	ENST00000358823	ENST00000278224		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000358823	ENST00000470221		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000358823	ENST00000401769		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000358823	ENST00000397114		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
Frame-shit	ENST00000413307	ENST00000380525		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
In-frame	ENST00000413307	ENST00000397111		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
Frame-shit	ENST00000413307	ENST00000278224		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000413307	ENST00000470221		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000413307	ENST00000401769		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000413307	ENST00000397114		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
Frame-shit	ENST00000236925	ENST00000380525		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
In-frame	ENST00000236925	ENST00000397111		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
Frame-shit	ENST00000236925	ENST00000278224		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000236925	ENST00000470221		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000236925	ENST00000401769		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
5CDS-5UTR	ENST00000236925	ENST00000397114		TCGA	LD	LUSC	TCGA-43-8115-01A	CAMSAP2	chr1	200824017	+	CARS	chr11	3022478	-
In-frame	ENST00000406337	ENST00000602723		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000406337	ENST00000400186		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000406337	ENST00000520002		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000406337	ENST00000602557		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000406337	ENST00000537824		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000406337	ENST00000542608		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000406337	ENST00000539096		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
5CDS-intron	ENST00000406337	ENST00000523387		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000602723		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000400186		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000520002		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000602557		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000537824		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000542608		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000265713	ENST00000539096		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
5CDS-intron	ENST00000265713	ENST00000523387		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000602723		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000400186		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000520002		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000602557		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000537824		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000542608		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000396930	ENST00000539096		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
5CDS-intron	ENST00000396930	ENST00000523387		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000602723		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000400186		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000520002		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000602557		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000537824		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000542608		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
Frame-shit	ENST00000485568	ENST00000539096		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
5CDS-intron	ENST00000485568	ENST00000523387		TCGA	LD	LUSC	TCGA-43-8115-01A	KAT6A	chr8	41905896	-	CSMD1	chr8	4495080	-
In-frame	ENST00000372396	ENST00000366641		TCGA	LD	LUSC	TCGA-43-8115-01A	KDM4A	chr1	44126083	+	EGLN1	chr1	231509845	-
5CDS-5UTR	ENST00000372396	ENST00000476717		TCGA	LD	LUSC	TCGA-43-8115-01A	KDM4A	chr1	44126083	+	EGLN1	chr1	231509845	-
3UTR-3CDS	ENST00000463151	ENST00000366641		TCGA	LD	LUSC	TCGA-43-8115-01A	KDM4A	chr1	44126083	+	EGLN1	chr1	231509845	-
3UTR-5UTR	ENST00000463151	ENST00000476717		TCGA	LD	LUSC	TCGA-43-8115-01A	KDM4A	chr1	44126083	+	EGLN1	chr1	231509845	-
intron-3CDS	ENST00000559624	ENST00000306917		TCGA	LD	LUSC	TCGA-43-8116-01A	EIF2AK4	chr15	40314806	+	FEM1B	chr15	68581945	+
In-frame	ENST00000382727	ENST00000306917		TCGA	LD	LUSC	TCGA-43-8116-01A	EIF2AK4	chr15	40314806	+	FEM1B	chr15	68581945	+
In-frame	ENST00000263791	ENST00000306917		TCGA	LD	LUSC	TCGA-43-8116-01A	EIF2AK4	chr15	40314806	+	FEM1B	chr15	68581945	+
intron-3CDS	ENST00000560648	ENST00000306917		TCGA	LD	LUSC	TCGA-43-8116-01A	EIF2AK4	chr15	40314806	+	FEM1B	chr15	68581945	+
intron-3CDS	ENST00000559311	ENST00000306917		TCGA	LD	LUSC	TCGA-43-8116-01A	EIF2AK4	chr15	40314806	+	FEM1B	chr15	68581945	+
3UTR-3CDS	ENST00000534948	ENST00000355044		TCGA	LD	LUSC	TCGA-43-8116-01A	ZNF518A	chr10	97893405	+	ATRNL1	chr10	117308968	+
3UTR-3CDS	ENST00000534948	ENST00000423111		TCGA	LD	LUSC	TCGA-43-8116-01A	ZNF518A	chr10	97893405	+	ATRNL1	chr10	117308968	+
3UTR-3CDS	ENST00000534948	ENST00000303745		TCGA	LD	LUSC	TCGA-43-8116-01A	ZNF518A	chr10	97893405	+	ATRNL1	chr10	117308968	+
3UTR-intron	ENST00000534948	ENST00000529665		TCGA	LD	LUSC	TCGA-43-8116-01A	ZNF518A	chr10	97893405	+	ATRNL1	chr10	117308968	+
3UTR-intron	ENST00000534948	ENST00000527407		TCGA	LD	LUSC	TCGA-43-8116-01A	ZNF518A	chr10	97893405	+	ATRNL1	chr10	117308968	+
In-frame	ENST00000487861	ENST00000315266		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000487861	ENST00000478722		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487861	ENST00000459628		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487861	ENST00000543237		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487861	ENST00000305960		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000487861	ENST00000544752		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000471583	ENST00000315266		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000471583	ENST00000478722		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000471583	ENST00000459628		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000471583	ENST00000543237		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000471583	ENST00000305960		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000471583	ENST00000544752		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000487270	ENST00000315266		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000487270	ENST00000478722		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487270	ENST00000459628		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487270	ENST00000543237		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487270	ENST00000305960		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000487270	ENST00000544752		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000488612	ENST00000315266		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000488612	ENST00000478722		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000488612	ENST00000459628		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000488612	ENST00000543237		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000488612	ENST00000305960		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000488612	ENST00000544752		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000390683	ENST00000315266		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000390683	ENST00000478722		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000390683	ENST00000459628		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000390683	ENST00000543237		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000390683	ENST00000305960		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000390683	ENST00000544752		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-3CDS	ENST00000469165	ENST00000315266		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-3CDS	ENST00000469165	ENST00000478722		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-intron	ENST00000469165	ENST00000459628		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-intron	ENST00000469165	ENST00000543237		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-intron	ENST00000469165	ENST00000305960		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-3UTR	ENST00000469165	ENST00000544752		TCGA	LD	LUSC	TCGA-43-A474-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
Frame-shit	ENST00000338882	ENST00000230340		TCGA	LD	LUSC	TCGA-43-A475-01A	METTL24	chr6	110643977	-	BYSL	chr6	41895112	+
intron-3CDS	ENST00000490043	ENST00000230340		TCGA	LD	LUSC	TCGA-43-A475-01A	METTL24	chr6	110643977	-	BYSL	chr6	41895112	+
intron-5UTR	ENST00000460736	ENST00000370179		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-5UTR	ENST00000460736	ENST00000370177		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-3UTR	ENST00000460736	ENST00000473620		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-5UTR	ENST00000379619	ENST00000370179		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-5UTR	ENST00000379619	ENST00000370177		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-3UTR	ENST00000379619	ENST00000473620		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-5UTR	ENST00000264716	ENST00000370179		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-5UTR	ENST00000264716	ENST00000370177		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
intron-3UTR	ENST00000264716	ENST00000473620		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
5UTR-5UTR	ENST00000545753	ENST00000370179		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
5UTR-5UTR	ENST00000545753	ENST00000370177		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
5UTR-3UTR	ENST00000545753	ENST00000473620		TCGA	LD	LUSC	TCGA-43-A56U-01A	FOSL2	chr2	28618644	+	PPDPF	chr20	62152139	+
3UTR-5UTR	ENST00000503395	ENST00000328051		TCGA	LD	LUSC	TCGA-43-A56U-01A	TUBBP5	chr9	141044760	+	SPRR4	chr1	152944347	+
5CDS-5UTR	ENST00000493293	ENST00000342315		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
5CDS-5UTR	ENST00000493293	ENST00000392583		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
5CDS-5UTR	ENST00000493293	ENST00000449768		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
5CDS-5UTR	ENST00000264144	ENST00000342315		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
5CDS-5UTR	ENST00000264144	ENST00000392583		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
5CDS-5UTR	ENST00000264144	ENST00000449768		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
intron-5UTR	ENST00000461729	ENST00000342315		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
intron-5UTR	ENST00000461729	ENST00000392583		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
intron-5UTR	ENST00000461729	ENST00000449768		TCGA	LD	LUSC	TCGA-46-3766-01A	LAMC2	chr1	183187623	+	OAS2	chr12	113416401	+
Frame-shit	ENST00000281419	ENST00000263663		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
5CDS-intron	ENST00000281419	ENST00000402170		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
5CDS-5UTR	ENST00000281419	ENST00000396242		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
Frame-shit	ENST00000315273	ENST00000263663		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
5CDS-intron	ENST00000315273	ENST00000402170		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
5CDS-5UTR	ENST00000315273	ENST00000396242		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
intron-3CDS	ENST00000491413	ENST00000263663		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
intron-intron	ENST00000491413	ENST00000402170		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
intron-5UTR	ENST00000491413	ENST00000396242		TCGA	LD	LUSC	TCGA-46-3767-01A	ASAP2	chr2	9347359	+	TAF1B	chr2	10022835	+
intron-3CDS	ENST00000522684	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000522684	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000535192	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000535192	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519465	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519465	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517887	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517887	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000521059	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000521059	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000395218	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000395218	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000538769	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000538769	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000340930	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000340930	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519419	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519419	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000430260	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000430260	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519881	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519881	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000520892	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
5UTR-3CDS	ENST00000520892	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519635	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000519635	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517712	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000517712	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000522950	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000522950	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000520151	ENST00000355621		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
intron-3CDS	ENST00000520151	ENST00000473814		TCGA	LD	LUSC	TCGA-46-3767-01A	PTK2	chr8	142010979	-	UBE2H	chr7	129479175	-
5CDS-5UTR	ENST00000305135	ENST00000433971		TCGA	LD	LUSC	TCGA-46-3767-01A	YEATS2	chr3	183495488	+	TPRG1	chr3	188925165	+
5CDS-5UTR	ENST00000305135	ENST00000345063		TCGA	LD	LUSC	TCGA-46-3767-01A	YEATS2	chr3	183495488	+	TPRG1	chr3	188925165	+
5CDS-intron	ENST00000305135	ENST00000488841		TCGA	LD	LUSC	TCGA-46-3767-01A	YEATS2	chr3	183495488	+	TPRG1	chr3	188925165	+
5CDS-5UTR	ENST00000373060	ENST00000511642		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373060	ENST00000415497		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373060	ENST00000372988		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373060	ENST00000510503		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373060	ENST00000511686		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373060	ENST00000372991		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373060	ENST00000372987		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373060	ENST00000414200		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373063	ENST00000511642		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373063	ENST00000415497		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373063	ENST00000372988		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373063	ENST00000510503		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373063	ENST00000511686		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373063	ENST00000372991		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373063	ENST00000372987		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373063	ENST00000414200		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409208	ENST00000511642		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409208	ENST00000415497		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409208	ENST00000372988		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409208	ENST00000510503		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409208	ENST00000511686		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409208	ENST00000372991		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409208	ENST00000372987		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409208	ENST00000414200		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373057	ENST00000511642		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373057	ENST00000415497		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373057	ENST00000372988		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373057	ENST00000510503		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373057	ENST00000511686		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373057	ENST00000372991		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373057	ENST00000372987		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373057	ENST00000414200		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000307972	ENST00000511642		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000307972	ENST00000415497		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000307972	ENST00000372988		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000307972	ENST00000510503		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000307972	ENST00000511686		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000307972	ENST00000372991		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000307972	ENST00000372987		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000307972	ENST00000414200		TCGA	LD	LUSC	TCGA-46-3769-01A	FOXP4	chr6	41545819	+	CCND3	chr6	41908323	-
3UTR-3UTR	ENST00000377047	ENST00000389467		TCGA	LD	LUSC	TCGA-46-3769-01A	GPC6	chr13	95055810	+	SMG1	chr16	18816264	-
3UTR-3UTR	ENST00000377047	ENST00000446231		TCGA	LD	LUSC	TCGA-46-3769-01A	GPC6	chr13	95055810	+	SMG1	chr16	18816264	-
3UTR-intron	ENST00000377047	ENST00000565224		TCGA	LD	LUSC	TCGA-46-3769-01A	GPC6	chr13	95055810	+	SMG1	chr16	18816264	-
3UTR-intron	ENST00000377047	ENST00000567737		TCGA	LD	LUSC	TCGA-46-3769-01A	GPC6	chr13	95055810	+	SMG1	chr16	18816264	-
5CDS-intron	ENST00000370888	ENST00000486436		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370888	ENST00000370869		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370888	ENST00000259782		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370888	ENST00000370864		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370882	ENST00000486436		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370882	ENST00000370869		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370882	ENST00000259782		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5CDS-intron	ENST00000370882	ENST00000370864		TCGA	LD	LUSC	TCGA-46-3769-01A	LRRC1	chr6	53707025	+	TINAG	chr6	54208024	+
5UTR-3CDS	ENST00000321341	ENST00000428869		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000321341	ENST00000431965		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000321341	ENST00000256425		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000321341	ENST00000588444		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000321341	ENST00000436348		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000321341	ENST00000398439		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-intron	ENST00000321341	ENST00000587291		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000382927	ENST00000428869		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000382927	ENST00000431965		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000382927	ENST00000256425		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000382927	ENST00000588444		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000382927	ENST00000436348		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-3CDS	ENST00000382927	ENST00000398439		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5UTR-intron	ENST00000382927	ENST00000587291		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000585680	ENST00000428869		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000585680	ENST00000431965		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000585680	ENST00000256425		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000585680	ENST00000588444		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000585680	ENST00000436348		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-3CDS	ENST00000585680	ENST00000398439		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
intron-intron	ENST00000585680	ENST00000587291		TCGA	LD	LUSC	TCGA-46-3769-01A	ME2	chr18	48405678	+	MRO	chr18	48333220	-
5CDS-5UTR	ENST00000261497	ENST00000539484		TCGA	LD	LUSC	TCGA-46-3769-01A	USP22	chr17	20922397	-	CCDC144NL	chr17	20770016	-
5CDS-5UTR	ENST00000261497	ENST00000327925		TCGA	LD	LUSC	TCGA-46-3769-01A	USP22	chr17	20922397	-	CCDC144NL	chr17	20770016	-
5CDS-5UTR	ENST00000537526	ENST00000539484		TCGA	LD	LUSC	TCGA-46-3769-01A	USP22	chr17	20922397	-	CCDC144NL	chr17	20770016	-
5CDS-5UTR	ENST00000537526	ENST00000327925		TCGA	LD	LUSC	TCGA-46-3769-01A	USP22	chr17	20922397	-	CCDC144NL	chr17	20770016	-
intron-5UTR	ENST00000455117	ENST00000539484		TCGA	LD	LUSC	TCGA-46-3769-01A	USP22	chr17	20922397	-	CCDC144NL	chr17	20770016	-
intron-5UTR	ENST00000455117	ENST00000327925		TCGA	LD	LUSC	TCGA-46-3769-01A	USP22	chr17	20922397	-	CCDC144NL	chr17	20770016	-
Frame-shit	ENST00000392562	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392562	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392562	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392562	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
Frame-shit	ENST00000316804	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000316804	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000316804	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000316804	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
Frame-shit	ENST00000316615	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000316615	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000316615	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000316615	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
In-frame	ENST00000392563	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392563	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392563	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392563	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
In-frame	ENST00000392564	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392564	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392564	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000392564	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
In-frame	ENST00000578961	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000578961	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000578961	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
5CDS-5UTR	ENST00000578961	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
intron-3CDS	ENST00000462266	ENST00000419333		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
intron-5UTR	ENST00000462266	ENST00000292823		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
intron-5UTR	ENST00000462266	ENST00000431016		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
intron-5UTR	ENST00000462266	ENST00000491544		TCGA	LD	LUSC	TCGA-46-6025-01A	GRB2	chr17	73389632	-	PCYT1A	chr3	195997412	-
Frame-shit	ENST00000252711	ENST00000354905		TCGA	LD	LUSC	TCGA-46-6025-01A	NDUFA10	chr2	240944627	-	TMEM207	chr3	190147520	-
intron-3CDS	ENST00000471378	ENST00000354905		TCGA	LD	LUSC	TCGA-46-6025-01A	NDUFA10	chr2	240944627	-	TMEM207	chr3	190147520	-
Frame-shit	ENST00000404554	ENST00000354905		TCGA	LD	LUSC	TCGA-46-6025-01A	NDUFA10	chr2	240944627	-	TMEM207	chr3	190147520	-
Frame-shit	ENST00000307300	ENST00000354905		TCGA	LD	LUSC	TCGA-46-6025-01A	NDUFA10	chr2	240944627	-	TMEM207	chr3	190147520	-
intron-3CDS	ENST00000407129	ENST00000354905		TCGA	LD	LUSC	TCGA-46-6025-01A	NDUFA10	chr2	240944627	-	TMEM207	chr3	190147520	-
Frame-shit	ENST00000539111	ENST00000225792		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
Frame-shit	ENST00000539111	ENST00000450599		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
Frame-shit	ENST00000539111	ENST00000578804		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
5CDS-5UTR	ENST00000539111	ENST00000580026		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
intron-3CDS	ENST00000582501	ENST00000225792		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
intron-3CDS	ENST00000582501	ENST00000450599		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
intron-3CDS	ENST00000582501	ENST00000578804		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
intron-5UTR	ENST00000582501	ENST00000580026		TCGA	LD	LUSC	TCGA-46-6025-01A	POLG2	chr17	62488784	-	DDX5	chr17	62496444	-
Frame-shit	ENST00000344041	ENST00000495075		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000344041	ENST00000310776		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000344041	ENST00000465056		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000344041	ENST00000478464		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5CDS-intron	ENST00000344041	ENST00000489521		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5UTR-3CDS	ENST00000475788	ENST00000495075		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5UTR-3CDS	ENST00000475788	ENST00000310776		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5UTR-3CDS	ENST00000475788	ENST00000465056		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5UTR-3CDS	ENST00000475788	ENST00000478464		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5UTR-intron	ENST00000475788	ENST00000489521		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000405243	ENST00000495075		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000405243	ENST00000310776		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000405243	ENST00000465056		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
Frame-shit	ENST00000405243	ENST00000478464		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5CDS-intron	ENST00000405243	ENST00000489521		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
intron-3CDS	ENST00000401957	ENST00000495075		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
intron-3CDS	ENST00000401957	ENST00000310776		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
intron-3CDS	ENST00000401957	ENST00000465056		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
intron-3CDS	ENST00000401957	ENST00000478464		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
intron-intron	ENST00000401957	ENST00000489521		TCGA	LD	LUSC	TCGA-46-6025-01A	RAPGEF5	chr7	22270465	-	MRPS22	chr3	139065720	+
5CDS-intron	ENST00000377897	ENST00000384756		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000364799		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000384693		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000383926		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000516331		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000384706		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000363981		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000384147		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000377897	ENST00000365607		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000384756		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000364799		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000384693		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000383926		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000516331		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000384706		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000363981		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000384147		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000294179	ENST00000365607		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000384756		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000364799		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000384693		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000383926		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000516331		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000384706		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000363981		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000384147		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000394690	ENST00000365607		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000384756		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000364799		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000384693		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000383926		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000516331		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000384706		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000363981		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000384147		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
5CDS-intron	ENST00000541317	ENST00000365607		TCGA	LD	LUSC	TCGA-46-6025-01A	STX5	chr11	62591638	-	SNHG1	chr11	62620311	-
In-frame	ENST00000391993	ENST00000361999		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000391993	ENST00000355123		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000391993	ENST00000406921		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
5CDS-intron	ENST00000391993	ENST00000407704		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000373327	ENST00000361999		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000373327	ENST00000355123		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000373327	ENST00000406921		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
5CDS-intron	ENST00000373327	ENST00000407704		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000391994	ENST00000361999		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000391994	ENST00000355123		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000391994	ENST00000406921		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
5CDS-intron	ENST00000391994	ENST00000407704		TCGA	LD	LUSC	TCGA-46-6025-01A	TRAF3IP1	chr2	239237983	+	ITSN2	chr2	24498718	-
In-frame	ENST00000349714	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000349714	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000359226	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000359226	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000374384	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000374384	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000374380	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000374380	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000374385	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000374385	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
5UTR-3CDS	ENST00000374377	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
5UTR-3CDS	ENST00000374377	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
intron-3CDS	ENST00000397556	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
intron-3CDS	ENST00000397556	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000407996	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000407996	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
5UTR-3CDS	ENST00000540457	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
5UTR-3CDS	ENST00000540457	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000542501	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000542501	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000397554	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000397554	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
5UTR-3CDS	ENST00000491125	ENST00000374369		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
5UTR-3CDS	ENST00000491125	ENST00000374372		TCGA	LD	LUSC	TCGA-46-6025-01A	UQCC1	chr20	33999743	-	GDF5	chr20	34022581	-
In-frame	ENST00000262903	ENST00000369162		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
In-frame	ENST00000262903	ENST00000522650		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
In-frame	ENST00000262903	ENST00000369143		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
In-frame	ENST00000369125	ENST00000369162		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
In-frame	ENST00000369125	ENST00000522650		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
In-frame	ENST00000369125	ENST00000369143		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
intron-3CDS	ENST00000517995	ENST00000369162		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
intron-3CDS	ENST00000517995	ENST00000522650		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
intron-3CDS	ENST00000517995	ENST00000369143		TCGA	LD	LUSC	TCGA-46-6026-01A	HACE1	chr6	105291098	-	ASCC3	chr6	101312090	-
In-frame	ENST00000369110	ENST00000369208		TCGA	LD	LUSC	TCGA-46-6026-01A	PREP	chr6	105736633	-	SIM1	chr6	100868834	-
In-frame	ENST00000369110	ENST00000262901		TCGA	LD	LUSC	TCGA-46-6026-01A	PREP	chr6	105736633	-	SIM1	chr6	100868834	-
Frame-shit	ENST00000254323	ENST00000430939		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
Frame-shit	ENST00000254323	ENST00000221742		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000254323	ENST00000600144		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000254323	ENST00000598504		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000254323	ENST00000544886		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000440752	ENST00000430939		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000440752	ENST00000221742		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000440752	ENST00000600144		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000440752	ENST00000598504		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
intron-5UTR	ENST00000440752	ENST00000544886		TCGA	LD	LUSC	TCGA-46-6026-01A	ZSWIM4	chr19	13910735	+	SLC1A6	chr19	15083729	-
intron-3UTR	ENST00000525566	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000525566	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000525566	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000525566	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000525566	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000525566	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000429002	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000429002	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000429002	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000429002	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000429002	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000429002	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000503506	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000503506	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000503506	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000503506	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000503506	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000503506	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526691	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526691	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526691	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526691	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526691	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526691	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000388854	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000388854	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000388854	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000388854	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000388854	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000388854	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000354940	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000354940	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000354940	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000354940	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000354940	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000354940	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526390	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526390	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526390	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526390	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000526390	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000526390	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000529546	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000529546	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000529546	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000529546	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000529546	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000529546	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000540716	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000540716	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000540716	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000540716	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000540716	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
5UTR-intron	ENST00000540716	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000524698	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000524698	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000524698	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000524698	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000524698	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000524698	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542918	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542918	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542918	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542918	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542918	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000542918	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378070	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378070	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378070	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378070	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378070	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378070	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000397736	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000397736	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000397736	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000397736	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000397736	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000397736	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000427956	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000427956	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000427956	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000427956	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000427956	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000427956	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526950	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526950	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526950	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526950	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526950	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526950	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526006	ENST00000313949		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526006	ENST00000371098		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526006	ENST00000371075		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526006	ENST00000371100		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000371099		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000371102		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000526006	ENST00000464624		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000306120		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000371095		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000371085		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000354359		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000265620		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000306090		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-intron	ENST00000526006	ENST00000371081		TCGA	LD	LUSC	TCGA-51-4079-01A	TXNRD1	chr12	104680887	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000333407	ENST00000256759		TCGA	LD	LUSC	TCGA-51-4081-01A	FAM83F	chr22	40422050	+	FST	chr5	52782785	+
intron-3UTR	ENST00000333407	ENST00000396947		TCGA	LD	LUSC	TCGA-51-4081-01A	FAM83F	chr22	40422050	+	FST	chr5	52782785	+
intron-3UTR	ENST00000488874	ENST00000256759		TCGA	LD	LUSC	TCGA-51-4081-01A	FAM83F	chr22	40422050	+	FST	chr5	52782785	+
intron-3UTR	ENST00000488874	ENST00000396947		TCGA	LD	LUSC	TCGA-51-4081-01A	FAM83F	chr22	40422050	+	FST	chr5	52782785	+
intron-3UTR	ENST00000473717	ENST00000256759		TCGA	LD	LUSC	TCGA-51-4081-01A	FAM83F	chr22	40422050	+	FST	chr5	52782785	+
intron-3UTR	ENST00000473717	ENST00000396947		TCGA	LD	LUSC	TCGA-51-4081-01A	FAM83F	chr22	40422050	+	FST	chr5	52782785	+
5CDS-intron	ENST00000371711	ENST00000371518		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
5CDS-intron	ENST00000371711	ENST00000361387		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
5CDS-intron	ENST00000371711	ENST00000477786		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
5CDS-intron	ENST00000371711	ENST00000371523		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
5CDS-intron	ENST00000371711	ENST00000346617		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
5CDS-intron	ENST00000371711	ENST00000371515		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
5CDS-intron	ENST00000371711	ENST00000216923		TCGA	LD	LUSC	TCGA-51-6867-01A	B4GALT5	chr20	48330113	-	ZFP64	chr20	50769967	-
Frame-shit	ENST00000371873	ENST00000587758		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000588426		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000356783		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000291901		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000536926		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000588981		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000587465		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000371873	ENST00000585321		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
5CDS-intron	ENST00000371873	ENST00000592920		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000587758		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000588426		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000356783		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000291901		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000536926		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000588981		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000587465		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000450808	ENST00000585321		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
5CDS-intron	ENST00000450808	ENST00000592920		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000587758		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000588426		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000356783		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000291901		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000536926		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000588981		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000587465		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
Frame-shit	ENST00000471289	ENST00000585321		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
5CDS-intron	ENST00000471289	ENST00000592920		TCGA	LD	LUSC	TCGA-51-6867-01A	CMPK1	chr1	47799788	+	TNNT1	chr19	55645524	-
intron-3CDS	ENST00000543760	ENST00000503581		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-3CDS	ENST00000543760	ENST00000370621		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-3CDS	ENST00000543760	ENST00000370616		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000543760	ENST00000393380		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000543760	ENST00000342421		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000543760	ENST00000370618		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000543760	ENST00000486069		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
Frame-shit	ENST00000366672	ENST00000503581		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
Frame-shit	ENST00000366672	ENST00000370621		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
Frame-shit	ENST00000366672	ENST00000370616		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5CDS-intron	ENST00000366672	ENST00000393380		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5CDS-intron	ENST00000366672	ENST00000342421		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5CDS-intron	ENST00000366672	ENST00000370618		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5CDS-intron	ENST00000366672	ENST00000486069		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-3CDS	ENST00000541865	ENST00000503581		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-3CDS	ENST00000541865	ENST00000370621		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-3CDS	ENST00000541865	ENST00000370616		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-intron	ENST00000541865	ENST00000393380		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-intron	ENST00000541865	ENST00000342421		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-intron	ENST00000541865	ENST00000370618		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-intron	ENST00000541865	ENST00000486069		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-3CDS	ENST00000485438	ENST00000503581		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-3CDS	ENST00000485438	ENST00000370621		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-3CDS	ENST00000485438	ENST00000370616		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000485438	ENST00000393380		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000485438	ENST00000342421		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000485438	ENST00000370618		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
intron-intron	ENST00000485438	ENST00000486069		TCGA	LD	LUSC	TCGA-51-6867-01A	GALNT2	chr1	230203153	+	EYS	chr6	64436573	-
5UTR-3CDS	ENST00000327134	ENST00000392379		TCGA	LD	LUSC	TCGA-51-6867-01A	PAK2	chr3	196467028	+	BDH1	chr3	197260432	-
5UTR-3CDS	ENST00000327134	ENST00000392378		TCGA	LD	LUSC	TCGA-51-6867-01A	PAK2	chr3	196467028	+	BDH1	chr3	197260432	-
5UTR-3CDS	ENST00000327134	ENST00000358186		TCGA	LD	LUSC	TCGA-51-6867-01A	PAK2	chr3	196467028	+	BDH1	chr3	197260432	-
5UTR-5UTR	ENST00000327134	ENST00000441275		TCGA	LD	LUSC	TCGA-51-6867-01A	PAK2	chr3	196467028	+	BDH1	chr3	197260432	-
5UTR-intron	ENST00000327134	ENST00000476764		TCGA	LD	LUSC	TCGA-51-6867-01A	PAK2	chr3	196467028	+	BDH1	chr3	197260432	-
In-frame	ENST00000355481	ENST00000355014		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000355481	ENST00000368285		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000355481	ENST00000368284		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000355481	ENST00000368286		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000355481	ENST00000368282		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
5CDS-3UTR	ENST00000355481	ENST00000487358		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000360985	ENST00000355014		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000360985	ENST00000368285		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000360985	ENST00000368284		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000360985	ENST00000368286		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000360985	ENST00000368282		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
5CDS-3UTR	ENST00000360985	ENST00000487358		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000359596	ENST00000355014		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000359596	ENST00000368285		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000359596	ENST00000368284		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000359596	ENST00000368286		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000359596	ENST00000368282		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
5CDS-3UTR	ENST00000359596	ENST00000487358		TCGA	LD	LUSC	TCGA-51-6867-01A	RYR1	chr19	39058557	+	SEMA4A	chr1	156142617	+
3UTR-intron	ENST00000462832	ENST00000258534		TCGA	LD	LUSC	TCGA-51-6867-01A	SPDYA	chr2	29016863	+	DRAM1	chr12	102405591	+
3UTR-intron	ENST00000462832	ENST00000544152		TCGA	LD	LUSC	TCGA-51-6867-01A	SPDYA	chr2	29016863	+	DRAM1	chr12	102405591	+
intron-intron	ENST00000379579	ENST00000258534		TCGA	LD	LUSC	TCGA-51-6867-01A	SPDYA	chr2	29016863	+	DRAM1	chr12	102405591	+
intron-intron	ENST00000379579	ENST00000544152		TCGA	LD	LUSC	TCGA-51-6867-01A	SPDYA	chr2	29016863	+	DRAM1	chr12	102405591	+
intron-intron	ENST00000334056	ENST00000258534		TCGA	LD	LUSC	TCGA-51-6867-01A	SPDYA	chr2	29016863	+	DRAM1	chr12	102405591	+
intron-intron	ENST00000334056	ENST00000544152		TCGA	LD	LUSC	TCGA-51-6867-01A	SPDYA	chr2	29016863	+	DRAM1	chr12	102405591	+
5CDS-3UTR	ENST00000418917	ENST00000499676		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000489671		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000486111		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000477292		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000495310		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000467072		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000317104		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000310282		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000479040		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000397991		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000418917	ENST00000464782		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-3UTR	ENST00000490574	ENST00000499676		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000489671		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000486111		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000477292		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000495310		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000467072		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000317104		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000310282		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000479040		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000397991		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000490574	ENST00000464782		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-3UTR	ENST00000240851	ENST00000499676		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000489671		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000486111		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000477292		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000495310		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000467072		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000317104		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000310282		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000479040		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000397991		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000240851	ENST00000464782		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-3UTR	ENST00000476228	ENST00000499676		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000489671		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000486111		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000477292		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000495310		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000467072		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000317104		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000310282		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000479040		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000397991		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
5CDS-intron	ENST00000476228	ENST00000464782		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-3UTR	ENST00000481203	ENST00000499676		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000489671		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000486111		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000477292		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000495310		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000467072		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000317104		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000310282		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000479040		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000397991		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
intron-intron	ENST00000481203	ENST00000464782		TCGA	LD	LUSC	TCGA-51-6867-01A	TFG	chr3	100438902	+	TFDP2	chr3	141663880	-
Frame-shit	ENST00000367590	ENST00000367969		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367590	ENST00000443193		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367590	ENST00000436743		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367590	ENST00000540048		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
5CDS-intron	ENST00000367590	ENST00000476031		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367589	ENST00000367969		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367589	ENST00000443193		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367589	ENST00000436743		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000367589	ENST00000540048		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
5CDS-intron	ENST00000367589	ENST00000476031		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
intron-3CDS	ENST00000467345	ENST00000367969		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
intron-3CDS	ENST00000467345	ENST00000443193		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
intron-3CDS	ENST00000467345	ENST00000436743		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
intron-3CDS	ENST00000467345	ENST00000540048		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
intron-intron	ENST00000467345	ENST00000476031		TCGA	LD	LUSC	TCGA-51-6867-01A	XPR1	chr1	180601406	+	FCGR3A	chr1	161514748	-
Frame-shit	ENST00000324856	ENST00000374142		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
5CDS-intron	ENST00000324856	ENST00000478902		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
Frame-shit	ENST00000457599	ENST00000374142		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
5CDS-intron	ENST00000457599	ENST00000478902		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
Frame-shit	ENST00000374152	ENST00000374142		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
5CDS-intron	ENST00000374152	ENST00000478902		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
intron-3CDS	ENST00000540690	ENST00000374142		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
intron-intron	ENST00000540690	ENST00000478902		TCGA	LD	LUSC	TCGA-52-7622-01A	ARID1A	chr1	27059283	+	ZDHHC18	chr1	27175099	+
5CDS-5UTR	ENST00000357559	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000357559	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000357559	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000357559	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000305586	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000305586	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000305586	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000305586	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
intron-5UTR	ENST00000491674	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
intron-5UTR	ENST00000491674	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
intron-intron	ENST00000491674	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
intron-intron	ENST00000491674	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000491062	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000491062	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000491062	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000491062	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000468861	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000468861	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000468861	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000468861	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000445140	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000445140	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000445140	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000445140	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000480918	ENST00000242810		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000480918	ENST00000454652		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000480918	ENST00000476808		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000480918	ENST00000461813		TCGA	LD	LUSC	TCGA-52-7622-01A	FXR1	chr3	180675716	+	KLHL24	chr3	183361268	+
Frame-shit	ENST00000295628	ENST00000430863		TCGA	LD	LUSC	TCGA-52-7622-01A	LRRC58	chr3	120053709	-	MROH5	chr8	142458188	-
Frame-shit	ENST00000375571	ENST00000186436		TCGA	LD	LUSC	TCGA-52-7809-01A	MAPRE1	chr20	31434576	+	TMEM131	chr2	98543950	-
Frame-shit	ENST00000375571	ENST00000425805		TCGA	LD	LUSC	TCGA-52-7809-01A	MAPRE1	chr20	31434576	+	TMEM131	chr2	98543950	-
In-frame	ENST00000446845	ENST00000417037		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
In-frame	ENST00000446845	ENST00000396334		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-intron	ENST00000446845	ENST00000424893		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-intron	ENST00000446845	ENST00000495303		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-intron	ENST00000446845	ENST00000443433		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-3UTR	ENST00000446845	ENST00000481122		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
In-frame	ENST00000311806	ENST00000417037		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
In-frame	ENST00000311806	ENST00000396334		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-intron	ENST00000311806	ENST00000424893		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-intron	ENST00000311806	ENST00000495303		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-intron	ENST00000311806	ENST00000443433		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
5CDS-3UTR	ENST00000311806	ENST00000481122		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
intron-3CDS	ENST00000492714	ENST00000417037		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
intron-3CDS	ENST00000492714	ENST00000396334		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
intron-intron	ENST00000492714	ENST00000424893		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
intron-intron	ENST00000492714	ENST00000495303		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
intron-intron	ENST00000492714	ENST00000443433		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
intron-3UTR	ENST00000492714	ENST00000481122		TCGA	LD	LUSC	TCGA-52-7809-01A	OXSR1	chr3	38232330	+	MYD88	chr3	38181355	+
In-frame	ENST00000310343	ENST00000458238		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
In-frame	ENST00000310343	ENST00000531399		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
5CDS-3UTR	ENST00000310343	ENST00000602346		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
5CDS-3UTR	ENST00000310343	ENST00000530777		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
In-frame	ENST00000524655	ENST00000458238		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
In-frame	ENST00000524655	ENST00000531399		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
5CDS-3UTR	ENST00000524655	ENST00000602346		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
5CDS-3UTR	ENST00000524655	ENST00000530777		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3CDS	ENST00000392657	ENST00000458238		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3CDS	ENST00000392657	ENST00000531399		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3UTR	ENST00000392657	ENST00000602346		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3UTR	ENST00000392657	ENST00000530777		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3CDS	ENST00000527272	ENST00000458238		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3CDS	ENST00000527272	ENST00000531399		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3UTR	ENST00000527272	ENST00000602346		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
intron-3UTR	ENST00000527272	ENST00000530777		TCGA	LD	LUSC	TCGA-52-7810-01A	ARHGAP32	chr11	128963516	-	TP53AIP1	chr11	128806544	-
In-frame	ENST00000066544	ENST00000226067		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000066544	ENST00000430986		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000066544	ENST00000573945		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000066544	ENST00000575345		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-intron	ENST00000066544	ENST00000575307		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
In-frame	ENST00000531206	ENST00000226067		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000531206	ENST00000430986		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000531206	ENST00000573945		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000531206	ENST00000575345		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-intron	ENST00000531206	ENST00000575307		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
Frame-shit	ENST00000446365	ENST00000226067		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000446365	ENST00000430986		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000446365	ENST00000573945		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000446365	ENST00000575345		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-intron	ENST00000446365	ENST00000575307		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
In-frame	ENST00000527547	ENST00000226067		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000527547	ENST00000430986		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000527547	ENST00000573945		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-5UTR	ENST00000527547	ENST00000575345		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-intron	ENST00000527547	ENST00000575307		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5UTR-3CDS	ENST00000528748	ENST00000226067		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5UTR-5UTR	ENST00000528748	ENST00000430986		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5UTR-5UTR	ENST00000528748	ENST00000573945		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5UTR-5UTR	ENST00000528748	ENST00000575345		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5UTR-intron	ENST00000528748	ENST00000575307		TCGA	LD	LUSC	TCGA-52-7810-01A	CDC27	chr17	45258928	-	HLF	chr17	53345112	+
5CDS-intron	ENST00000454366	ENST00000381031		TCGA	LD	LUSC	TCGA-52-7810-01A	GTSE1	chr22	46693376	+	TTC38	chr22	46688100	+
5CDS-intron	ENST00000454366	ENST00000445282		TCGA	LD	LUSC	TCGA-52-7810-01A	GTSE1	chr22	46693376	+	TTC38	chr22	46688100	+
Frame-shit	ENST00000283426	ENST00000505113		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	AHRR	chr5	344008	+
Frame-shit	ENST00000283426	ENST00000316418		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000283426	ENST00000512529		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	AHRR	chr5	344008	+
5CDS-5UTR	ENST00000283426	ENST00000515206		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	AHRR	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000506456		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	AHRR	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000264933		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000505221		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000509581		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000507528		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	PDCD6	chr5	344008	+
5CDS-intron	ENST00000283426	ENST00000511482		TCGA	LD	LUSC	TCGA-52-7810-01A	PLEKHG4B	chr5	151714	+	PDCD6	chr5	344008	+
Frame-shit	ENST00000358823	ENST00000271751		TCGA	LD	LUSC	TCGA-52-7811-01A	CAMSAP2	chr1	200784772	+	KCNH1	chr1	210977508	-
Frame-shit	ENST00000358823	ENST00000367007		TCGA	LD	LUSC	TCGA-52-7811-01A	CAMSAP2	chr1	200784772	+	KCNH1	chr1	210977508	-
Frame-shit	ENST00000413307	ENST00000271751		TCGA	LD	LUSC	TCGA-52-7811-01A	CAMSAP2	chr1	200784772	+	KCNH1	chr1	210977508	-
Frame-shit	ENST00000413307	ENST00000367007		TCGA	LD	LUSC	TCGA-52-7811-01A	CAMSAP2	chr1	200784772	+	KCNH1	chr1	210977508	-
Frame-shit	ENST00000236925	ENST00000271751		TCGA	LD	LUSC	TCGA-52-7811-01A	CAMSAP2	chr1	200784772	+	KCNH1	chr1	210977508	-
Frame-shit	ENST00000236925	ENST00000367007		TCGA	LD	LUSC	TCGA-52-7811-01A	CAMSAP2	chr1	200784772	+	KCNH1	chr1	210977508	-
In-frame	ENST00000264828	ENST00000354618		TCGA	LD	LUSC	TCGA-52-7811-01A	COL5A3	chr19	10091324	-	THRAP3	chr1	36762184	+
In-frame	ENST00000264828	ENST00000469141		TCGA	LD	LUSC	TCGA-52-7811-01A	COL5A3	chr19	10091324	-	THRAP3	chr1	36762184	+
5CDS-intron	ENST00000264828	ENST00000466743		TCGA	LD	LUSC	TCGA-52-7811-01A	COL5A3	chr19	10091324	-	THRAP3	chr1	36762184	+
intron-3CDS	ENST00000454872	ENST00000361138		TCGA	LD	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174581880	+	SMC5	chr9	72959060	+
intron-intron	ENST00000454872	ENST00000471372		TCGA	LD	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174581880	+	SMC5	chr9	72959060	+
3UTR-3CDS	ENST00000473253	ENST00000361138		TCGA	LD	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174581880	+	SMC5	chr9	72959060	+
3UTR-intron	ENST00000473253	ENST00000471372		TCGA	LD	LUSC	TCGA-56-1622-01A	NAALADL2	chr3	174581880	+	SMC5	chr9	72959060	+
intron-3CDS	ENST00000342228	ENST00000522495		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
intron-3CDS	ENST00000342228	ENST00000518237		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
5UTR-3CDS	ENST00000520262	ENST00000522495		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
5UTR-3CDS	ENST00000520262	ENST00000518237		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
intron-3CDS	ENST00000520179	ENST00000522495		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
intron-3CDS	ENST00000520179	ENST00000518237		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
intron-3CDS	ENST00000523340	ENST00000522495		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
intron-3CDS	ENST00000523340	ENST00000518237		TCGA	LD	LUSC	TCGA-56-1622-01A	SLC20A2	chr8	42358549	-	IDO1	chr8	39785349	+
5CDS-5UTR	ENST00000488633	ENST00000313349		TCGA	LD	LUSC	TCGA-56-5897-01A	CIAO1	chr2	96934396	+	SERTAD2	chr2	64864009	-
5CDS-5UTR	ENST00000488633	ENST00000476805		TCGA	LD	LUSC	TCGA-56-5897-01A	CIAO1	chr2	96934396	+	SERTAD2	chr2	64864009	-
intron-5UTR	ENST00000469320	ENST00000313349		TCGA	LD	LUSC	TCGA-56-5897-01A	CIAO1	chr2	96934396	+	SERTAD2	chr2	64864009	-
intron-5UTR	ENST00000469320	ENST00000476805		TCGA	LD	LUSC	TCGA-56-5897-01A	CIAO1	chr2	96934396	+	SERTAD2	chr2	64864009	-
Frame-shit	ENST00000334444	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
Frame-shit	ENST00000334444	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
5CDS-intron	ENST00000334444	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
In-frame	ENST00000265586	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
In-frame	ENST00000265586	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
5CDS-intron	ENST00000265586	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-3CDS	ENST00000492216	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-3CDS	ENST00000492216	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-intron	ENST00000492216	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-3CDS	ENST00000427120	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-3CDS	ENST00000427120	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-intron	ENST00000427120	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
Frame-shit	ENST00000392579	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
Frame-shit	ENST00000392579	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
5CDS-intron	ENST00000392579	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
Frame-shit	ENST00000382494	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
Frame-shit	ENST00000382494	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
5CDS-intron	ENST00000382494	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-3CDS	ENST00000446941	ENST00000323116		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-3CDS	ENST00000446941	ENST00000493826		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
intron-intron	ENST00000446941	ENST00000482794		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	ATP11B	chr3	182538048	+
Frame-shit	ENST00000334444	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
Frame-shit	ENST00000334444	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
In-frame	ENST00000265586	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
In-frame	ENST00000265586	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
intron-3CDS	ENST00000492216	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
intron-3CDS	ENST00000492216	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
intron-3CDS	ENST00000427120	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
intron-3CDS	ENST00000427120	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
Frame-shit	ENST00000392579	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
Frame-shit	ENST00000392579	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
Frame-shit	ENST00000382494	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
Frame-shit	ENST00000382494	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
intron-3CDS	ENST00000446941	ENST00000292782		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
intron-3CDS	ENST00000446941	ENST00000469954		TCGA	LD	LUSC	TCGA-56-5898-01A	ABCC5	chr3	183705558	-	DCUN1D1	chr3	182662961	-
5UTR-3CDS	ENST00000245865	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000245865	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000245865	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000375840	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000375840	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000375840	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000392950	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000392950	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000392950	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000336174	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000336174	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
In-frame	ENST00000336174	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000447001	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000447001	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000447001	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000582137	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000582137	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000582137	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000580039	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000580039	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000580039	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000579340	ENST00000261267		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000579340	ENST00000549690		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000579340	ENST00000548839		TCGA	LD	LUSC	TCGA-56-5898-01A	STRADA	chr17	61805694	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000268070	ENST00000284382		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000268070	ENST00000538112		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
In-frame	ENST00000268070	ENST00000394113		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
5CDS-5UTR	ENST00000268070	ENST00000560944		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
5UTR-3CDS	ENST00000559976	ENST00000284382		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
5UTR-3CDS	ENST00000559976	ENST00000538112		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
5UTR-3CDS	ENST00000559976	ENST00000394113		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
5UTR-5UTR	ENST00000559976	ENST00000560944		TCGA	LD	LUSC	TCGA-56-6545-01A	ADAMTS17	chr15	100794341	-	CERS3	chr15	100943070	-
Frame-shit	ENST00000262097	ENST00000566780		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000262097	ENST00000406884		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
In-frame	ENST00000262097	ENST00000539474		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000262097	ENST00000402655		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000262097	ENST00000408984		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000262097	ENST00000355860		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000262097	ENST00000565791		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000262097	ENST00000569818		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000381733	ENST00000566780		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000381733	ENST00000406884		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
In-frame	ENST00000381733	ENST00000539474		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000381733	ENST00000402655		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000381733	ENST00000408984		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000381733	ENST00000355860		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000381733	ENST00000565791		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000381733	ENST00000569818		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000417108	ENST00000566780		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000417108	ENST00000406884		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
In-frame	ENST00000417108	ENST00000539474		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000417108	ENST00000402655		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000417108	ENST00000408984		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000417108	ENST00000355860		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000417108	ENST00000565791		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000417108	ENST00000569818		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000520781	ENST00000566780		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000520781	ENST00000406884		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
In-frame	ENST00000520781	ENST00000539474		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000520781	ENST00000402655		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000520781	ENST00000408984		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000520781	ENST00000355860		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000520781	ENST00000565791		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000520781	ENST00000569818		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000314146	ENST00000566780		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000314146	ENST00000406884		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000314146	ENST00000539474		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000314146	ENST00000402655		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000314146	ENST00000408984		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000314146	ENST00000355860		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000314146	ENST00000565791		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000314146	ENST00000569818		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000520051	ENST00000566780		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000520051	ENST00000406884		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000520051	ENST00000539474		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000520051	ENST00000402655		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000520051	ENST00000408984		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000520051	ENST00000355860		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000520051	ENST00000565791		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
intron-intron	ENST00000520051	ENST00000569818		TCGA	LD	LUSC	TCGA-56-6545-01A	ASAH1	chr8	17927301	-	WWOX	chr16	79245505	+
5UTR-5UTR	ENST00000455502	ENST00000360249		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
5UTR-5UTR	ENST00000455502	ENST00000359558		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
5UTR-intron	ENST00000455502	ENST00000421592		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
5UTR-intron	ENST00000455502	ENST00000394441		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
5UTR-5UTR	ENST00000455502	ENST00000426151		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000248572	ENST00000360249		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000248572	ENST00000359558		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000248572	ENST00000421592		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000248572	ENST00000394441		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000248572	ENST00000426151		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000429473	ENST00000360249		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000429473	ENST00000359558		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000429473	ENST00000421592		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000429473	ENST00000394441		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000429473	ENST00000426151		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000430875	ENST00000360249		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000430875	ENST00000359558		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000430875	ENST00000421592		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000430875	ENST00000394441		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000430875	ENST00000426151		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000428834	ENST00000360249		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000428834	ENST00000359558		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000428834	ENST00000421592		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-intron	ENST00000428834	ENST00000394441		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
intron-5UTR	ENST00000428834	ENST00000426151		TCGA	LD	LUSC	TCGA-56-6545-01A	GNGT1	chr7	93221083	+	CALCR	chr7	93203818	-
5CDS-intron	ENST00000379942	ENST00000435581		TCGA	LD	LUSC	TCGA-56-6545-01A	PHKA2	chrX	18923876	-	CD99P1	chrY	2506015	+
intron-intron	ENST00000481718	ENST00000435581		TCGA	LD	LUSC	TCGA-56-6545-01A	PHKA2	chrX	18923876	-	CD99P1	chrY	2506015	+
5UTR-3CDS	ENST00000256413	ENST00000589328		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
5UTR-3CDS	ENST00000256413	ENST00000409746		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
5UTR-5UTR	ENST00000256413	ENST00000588801		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
5UTR-3CDS	ENST00000382998	ENST00000589328		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
5UTR-3CDS	ENST00000382998	ENST00000409746		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
5UTR-5UTR	ENST00000382998	ENST00000588801		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
intron-3CDS	ENST00000592658	ENST00000589328		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
intron-3CDS	ENST00000592658	ENST00000409746		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
intron-5UTR	ENST00000592658	ENST00000588801		TCGA	LD	LUSC	TCGA-56-6546-01A	CTIF	chr18	46065683	+	PSTPIP2	chr18	43620013	-
5CDS-5UTR	ENST00000271588	ENST00000367510		TCGA	LD	LUSC	TCGA-56-6546-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000271588	ENST00000367509		TCGA	LD	LUSC	TCGA-56-6546-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000367492	ENST00000367510		TCGA	LD	LUSC	TCGA-56-6546-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185056684	+
5CDS-5UTR	ENST00000367492	ENST00000367509		TCGA	LD	LUSC	TCGA-56-6546-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185056684	+
intron-5UTR	ENST00000485744	ENST00000367510		TCGA	LD	LUSC	TCGA-56-6546-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185056684	+
intron-5UTR	ENST00000485744	ENST00000367509		TCGA	LD	LUSC	TCGA-56-6546-01A	HMCN1	chr1	185704179	+	RNF2	chr1	185056684	+
In-frame	ENST00000487694	ENST00000397228		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000487694	ENST00000523887		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000487694	ENST00000276461		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000487694	ENST00000518586		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000487694	ENST00000335171		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000487694	ENST00000523107		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000487694	ENST00000519638		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000461745	ENST00000397228		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000461745	ENST00000523887		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000461745	ENST00000276461		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000461745	ENST00000518586		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000461745	ENST00000335171		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000461745	ENST00000523107		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000461745	ENST00000519638		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000332191	ENST00000397228		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000332191	ENST00000523887		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000332191	ENST00000276461		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000332191	ENST00000518586		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000332191	ENST00000335171		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
Frame-shit	ENST00000332191	ENST00000523107		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
In-frame	ENST00000332191	ENST00000519638		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000397228		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000523887		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000276461		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000518586		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000335171		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000523107		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
intron-3CDS	ENST00000469233	ENST00000519638		TCGA	LD	LUSC	TCGA-56-6546-01A	ROBO2	chr3	77147491	+	ERLIN2	chr8	37602089	+
5CDS-intron	ENST00000253925	ENST00000528697		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000253925	ENST00000530763		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-5UTR	ENST00000253925	ENST00000534577		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000253925	ENST00000278198		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000253925	ENST00000527150		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000389547	ENST00000528697		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000389547	ENST00000530763		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-5UTR	ENST00000389547	ENST00000534577		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000389547	ENST00000278198		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
5CDS-intron	ENST00000389547	ENST00000527150		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
intron-intron	ENST00000530548	ENST00000528697		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
intron-intron	ENST00000530548	ENST00000530763		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
intron-5UTR	ENST00000530548	ENST00000534577		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
intron-intron	ENST00000530548	ENST00000278198		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
intron-intron	ENST00000530548	ENST00000527150		TCGA	LD	LUSC	TCGA-56-7221-01A	PPFIA1	chr11	70118542	+	LRRC4C	chr11	41244558	-
In-frame	ENST00000313766	ENST00000255977		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
5CDS-5UTR	ENST00000313766	ENST00000437223		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
5CDS-5UTR	ENST00000313766	ENST00000474576		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
5CDS-5UTR	ENST00000313766	ENST00000480552		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
5CDS-5UTR	ENST00000313766	ENST00000443720		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
5CDS-5UTR	ENST00000313766	ENST00000481705		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
intron-3CDS	ENST00000471328	ENST00000255977		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
intron-5UTR	ENST00000471328	ENST00000437223		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
intron-5UTR	ENST00000471328	ENST00000474576		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
intron-5UTR	ENST00000471328	ENST00000480552		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
intron-5UTR	ENST00000471328	ENST00000443720		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
intron-5UTR	ENST00000471328	ENST00000481705		TCGA	LD	LUSC	TCGA-56-7223-01A	FAM20C	chr7	208976	+	MKRN1	chr7	140171811	-
5CDS-intron	ENST00000334082	ENST00000520388		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-intron	ENST00000334082	ENST00000255189		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-5UTR	ENST00000334082	ENST00000380311		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-5UTR	ENST00000334082	ENST00000540686		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-intron	ENST00000535690	ENST00000520388		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-intron	ENST00000535690	ENST00000255189		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-5UTR	ENST00000535690	ENST00000380311		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-5UTR	ENST00000535690	ENST00000540686		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-intron	ENST00000508576	ENST00000520388		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-intron	ENST00000508576	ENST00000255189		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-5UTR	ENST00000508576	ENST00000380311		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
5CDS-5UTR	ENST00000508576	ENST00000540686		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-intron	ENST00000282260	ENST00000520388		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-intron	ENST00000282260	ENST00000255189		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-5UTR	ENST00000282260	ENST00000380311		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
intron-5UTR	ENST00000282260	ENST00000540686		TCGA	LD	LUSC	TCGA-56-7223-01A	HOMER1	chr5	78734833	-	DMGDH	chr5	78359610	-
In-frame	ENST00000392272	ENST00000368140		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000392272	ENST00000368138		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000392272	ENST00000392254		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000392272	ENST00000392252		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000392272	ENST00000368135		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000392272	ENST00000485134		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368173	ENST00000368140		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368173	ENST00000368138		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368173	ENST00000392254		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368173	ENST00000392252		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000368173	ENST00000368135		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000368173	ENST00000485134		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000360089	ENST00000368140		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000360089	ENST00000368138		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000360089	ENST00000392254		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000360089	ENST00000392252		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000360089	ENST00000368135		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000360089	ENST00000485134		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000359209	ENST00000368140		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000359209	ENST00000368138		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000359209	ENST00000392254		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000359209	ENST00000392252		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000359209	ENST00000368135		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000359209	ENST00000485134		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000416935	ENST00000368140		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000416935	ENST00000368138		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000416935	ENST00000392254		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000416935	ENST00000392252		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000416935	ENST00000368135		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000416935	ENST00000485134		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368172	ENST00000368140		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368172	ENST00000368138		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368172	ENST00000392254		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
In-frame	ENST00000368172	ENST00000392252		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000368172	ENST00000368135		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5CDS-intron	ENST00000368172	ENST00000485134		TCGA	LD	LUSC	TCGA-56-7223-01A	KIRREL	chr1	158063552	+	PYHIN1	chr1	158911767	+
5UTR-intron	ENST00000242810	ENST00000328913		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000242810	ENST00000473233		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000242810	ENST00000447025		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000242810	ENST00000414362		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000242810	ENST00000468976		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000454652	ENST00000328913		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000454652	ENST00000473233		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000454652	ENST00000447025		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000454652	ENST00000414362		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
5UTR-intron	ENST00000454652	ENST00000468976		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000476808	ENST00000328913		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000476808	ENST00000473233		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000476808	ENST00000447025		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000476808	ENST00000414362		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000476808	ENST00000468976		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000461813	ENST00000328913		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000461813	ENST00000473233		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000461813	ENST00000447025		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000461813	ENST00000414362		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
intron-intron	ENST00000461813	ENST00000468976		TCGA	LD	LUSC	TCGA-56-7223-01A	KLHL24	chr3	183361330	+	MCF2L2	chr3	182949000	-
Frame-shit	ENST00000328432	ENST00000295522		TCGA	LD	LUSC	TCGA-56-7223-01A	PPP1R2	chr3	195256595	-	CLDN1	chr3	190030825	-
5CDS-5UTR	ENST00000376462	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376462	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000481700	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000481700	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000458595	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000458595	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376454	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376454	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376452	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376452	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000430453	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000430453	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000307544	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000307544	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000396446	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000396446	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000396445	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000396445	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376451	ENST00000376356		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000376451	ENST00000524413		TCGA	LD	LUSC	TCGA-56-7580-01A	KIAA1217	chr10	24762989	+	THNSL1	chr10	25310671	+
5UTR-3CDS	ENST00000356327	ENST00000241261		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000356327	ENST00000420541		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000351298	ENST00000241261		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000351298	ENST00000420541		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000342215	ENST00000241261		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000342215	ENST00000420541		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000340989	ENST00000241261		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000340989	ENST00000420541		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000497307	ENST00000241261		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000497307	ENST00000420541		TCGA	LD	LUSC	TCGA-56-7580-01A	PLD1	chr3	171528189	-	TNFSF10	chr3	172232788	-
In-frame	ENST00000366955	ENST00000366641		TCGA	LD	LUSC	TCGA-56-7582-01A	CENPF	chr1	214795624	+	EGLN1	chr1	231509845	-
5CDS-5UTR	ENST00000366955	ENST00000476717		TCGA	LD	LUSC	TCGA-56-7582-01A	CENPF	chr1	214795624	+	EGLN1	chr1	231509845	-
intron-3CDS	ENST00000467765	ENST00000366641		TCGA	LD	LUSC	TCGA-56-7582-01A	CENPF	chr1	214795624	+	EGLN1	chr1	231509845	-
intron-5UTR	ENST00000467765	ENST00000476717		TCGA	LD	LUSC	TCGA-56-7582-01A	CENPF	chr1	214795624	+	EGLN1	chr1	231509845	-
In-frame	ENST00000349841	ENST00000457714		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000349841	ENST00000361589		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000349841	ENST00000401917		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000349841	ENST00000545397		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000349841	ENST00000466350		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000392733	ENST00000457714		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000392733	ENST00000361589		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000392733	ENST00000401917		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000392733	ENST00000545397		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000392733	ENST00000466350		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000356716	ENST00000457714		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000356716	ENST00000361589		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000356716	ENST00000401917		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000356716	ENST00000545397		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000356716	ENST00000466350		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000544106	ENST00000457714		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000544106	ENST00000361589		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000544106	ENST00000401917		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
In-frame	ENST00000544106	ENST00000545397		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
5CDS-intron	ENST00000544106	ENST00000466350		TCGA	LD	LUSC	TCGA-56-7730-01A	MYNN	chr3	169497349	+	NLGN1	chr3	173525470	+
Frame-shit	ENST00000454872	ENST00000265594		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
Frame-shit	ENST00000454872	ENST00000492597		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
Frame-shit	ENST00000454872	ENST00000539926		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
5CDS-5UTR	ENST00000454872	ENST00000489909		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
intron-3CDS	ENST00000473253	ENST00000265594		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
intron-3CDS	ENST00000473253	ENST00000492597		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
intron-3CDS	ENST00000473253	ENST00000539926		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
intron-5UTR	ENST00000473253	ENST00000489909		TCGA	LD	LUSC	TCGA-56-7730-01A	NAALADL2	chr3	175345174	+	MCCC1	chr3	182751865	-
Frame-shit	ENST00000283558	ENST00000541084		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000283558	ENST00000346342		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000283558	ENST00000375581		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
5CDS-3UTR	ENST00000283558	ENST00000473085		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000375630	ENST00000541084		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000375630	ENST00000346342		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000375630	ENST00000375581		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
5CDS-3UTR	ENST00000375630	ENST00000473085		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000487903	ENST00000541084		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000487903	ENST00000346342		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000487903	ENST00000375581		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
5CDS-3UTR	ENST00000487903	ENST00000473085		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000375645	ENST00000541084		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000375645	ENST00000346342		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000375645	ENST00000375581		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
5CDS-3UTR	ENST00000375645	ENST00000473085		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
intron-3CDS	ENST00000419448	ENST00000541084		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
intron-3CDS	ENST00000419448	ENST00000346342		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
intron-3CDS	ENST00000419448	ENST00000375581		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
intron-3UTR	ENST00000419448	ENST00000473085		TCGA	LD	LUSC	TCGA-56-7823-01B	ATP11A	chr13	113439571	+	F7	chr13	113768161	+
Frame-shit	ENST00000360467	ENST00000375312		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000360467	ENST00000360383		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000360467	ENST00000356221		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000360467	ENST00000375310		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000360467	ENST00000375308		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000360467	ENST00000252457		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000360467	ENST00000252458		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
5CDS-intron	ENST00000360467	ENST00000461716		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000375312		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000360383		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000356221		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000375310		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000375308		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000252457		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000462309	ENST00000252458		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
intron-intron	ENST00000462309	ENST00000461716		TCGA	LD	LUSC	TCGA-56-7823-01B	COL4A2	chr13	111009899	+	CDC16	chr13	115028354	+
5UTR-3CDS	ENST00000514342	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5UTR-3CDS	ENST00000514342	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5UTR-intron	ENST00000514342	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000505697	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000505697	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000505697	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
3UTR-3CDS	ENST00000511363	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
3UTR-3CDS	ENST00000511363	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
3UTR-intron	ENST00000511363	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000503750	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000503750	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000503750	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000281631	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000281631	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000281631	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000514067	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000514067	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000514067	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000505554	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000505554	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000505554	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000513738	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000513738	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000513738	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000503665	ENST00000298248		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
Frame-shit	ENST00000503665	ENST00000382812		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000503665	ENST00000480748		TCGA	LD	LUSC	TCGA-56-7823-01B	PARP8	chr5	49963959	+	CRYL1	chr13	20978880	-
In-frame	ENST00000375370	ENST00000283558		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
In-frame	ENST00000375370	ENST00000375630		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
In-frame	ENST00000375370	ENST00000487903		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
In-frame	ENST00000375370	ENST00000375645		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5CDS-intron	ENST00000375370	ENST00000419448		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000538138	ENST00000283558		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000538138	ENST00000375630		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000538138	ENST00000487903		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000538138	ENST00000375645		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-intron	ENST00000538138	ENST00000419448		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
3UTR-3CDS	ENST00000465174	ENST00000283558		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
3UTR-3CDS	ENST00000465174	ENST00000375630		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
3UTR-3CDS	ENST00000465174	ENST00000487903		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
3UTR-3CDS	ENST00000465174	ENST00000375645		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
3UTR-intron	ENST00000465174	ENST00000419448		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000544902	ENST00000283558		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000544902	ENST00000375630		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000544902	ENST00000487903		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-3CDS	ENST00000544902	ENST00000375645		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
5UTR-intron	ENST00000544902	ENST00000419448		TCGA	LD	LUSC	TCGA-56-7823-01B	TFDP1	chr13	114240164	+	ATP11A	chr13	113439449	+
In-frame	ENST00000366600	ENST00000391854		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
Frame-shit	ENST00000366600	ENST00000450593		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
Frame-shit	ENST00000366600	ENST00000366598		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
Frame-shit	ENST00000366600	ENST00000366597		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5CDS-5UTR	ENST00000366600	ENST00000484517		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
In-frame	ENST00000313984	ENST00000391854		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
Frame-shit	ENST00000313984	ENST00000450593		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
Frame-shit	ENST00000313984	ENST00000366598		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
Frame-shit	ENST00000313984	ENST00000366597		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5CDS-5UTR	ENST00000313984	ENST00000484517		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5UTR-3CDS	ENST00000494378	ENST00000391854		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5UTR-3CDS	ENST00000494378	ENST00000450593		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5UTR-3CDS	ENST00000494378	ENST00000366598		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5UTR-3CDS	ENST00000494378	ENST00000366597		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
5UTR-5UTR	ENST00000494378	ENST00000484517		TCGA	LD	LUSC	TCGA-56-8082-01A	B3GALNT2	chr1	235657991	-	GNG4	chr1	235715537	-
In-frame	ENST00000264474	ENST00000490131		TCGA	LD	LUSC	TCGA-56-8082-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
In-frame	ENST00000264474	ENST00000498619		TCGA	LD	LUSC	TCGA-56-8082-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
In-frame	ENST00000264474	ENST00000296154		TCGA	LD	LUSC	TCGA-56-8082-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000479204	ENST00000490131		TCGA	LD	LUSC	TCGA-56-8082-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000479204	ENST00000498619		TCGA	LD	LUSC	TCGA-56-8082-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000479204	ENST00000296154		TCGA	LD	LUSC	TCGA-56-8082-01A	CSTA	chr3	122056495	+	CASR	chr3	121994659	+
Frame-shit	ENST00000421834	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000421834	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000370769	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000370769	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
3UTR-3CDS	ENST00000312431	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
3UTR-3CDS	ENST00000312431	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000370754	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000370754	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000370788	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000370788	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000361203	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000361203	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000244364	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000244364	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000446842	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
Frame-shit	ENST00000446842	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
5UTR-3CDS	ENST00000340834	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
5UTR-3CDS	ENST00000340834	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
intron-3CDS	ENST00000370765	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
intron-3CDS	ENST00000370765	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
intron-3CDS	ENST00000518935	ENST00000370830		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
intron-3CDS	ENST00000518935	ENST00000446683		TCGA	LD	LUSC	TCGA-56-8082-01A	DST	chr6	56391159	-	BMP5	chr6	55659225	-
5CDS-intron	ENST00000217402	ENST00000400522		TCGA	LD	LUSC	TCGA-56-8305-01A	CHMP4B	chr20	32399464	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000217402	ENST00000524882		TCGA	LD	LUSC	TCGA-56-8305-01A	CHMP4B	chr20	32399464	+	EFCAB8	chr20	31531442	+
In-frame	ENST00000261866	ENST00000382518		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000261866	ENST00000009180		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-5UTR	ENST00000261866	ENST00000382515		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-3UTR	ENST00000261866	ENST00000481267		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000535302	ENST00000382518		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000535302	ENST00000009180		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-5UTR	ENST00000535302	ENST00000382515		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-3UTR	ENST00000535302	ENST00000481267		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000427534	ENST00000382518		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000427534	ENST00000009180		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-5UTR	ENST00000427534	ENST00000382515		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-3UTR	ENST00000427534	ENST00000481267		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000558319	ENST00000382518		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000558319	ENST00000009180		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-5UTR	ENST00000558319	ENST00000382515		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-3UTR	ENST00000558319	ENST00000481267		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
intron-3CDS	ENST00000558253	ENST00000382518		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
intron-3CDS	ENST00000558253	ENST00000009180		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
intron-5UTR	ENST00000558253	ENST00000382515		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
intron-3UTR	ENST00000558253	ENST00000481267		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000559193	ENST00000382518		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
In-frame	ENST00000559193	ENST00000009180		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-5UTR	ENST00000559193	ENST00000382515		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
5CDS-3UTR	ENST00000559193	ENST00000481267		TCGA	LD	LUSC	TCGA-56-8503-01A	SPG11	chr15	44941064	-	CD9	chr12	6334592	+
intron-5UTR	ENST00000505330	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000505330	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000505330	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000505330	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000505330	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000505330	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000505330	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000505330	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000504381	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000504381	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000504381	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000504381	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000504381	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000504381	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000504381	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000507488	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000507488	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000507488	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000507488	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000507488	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000507488	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000507488	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000393221	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000393221	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000393221	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000393221	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000393221	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000393221	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000393221	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000533801	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000533801	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000533801	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000533801	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000533801	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000533801	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000533801	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000510168	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000510168	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000510168	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000510168	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000510168	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000510168	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-3UTR	ENST00000510168	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000508532	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000508532	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000508532	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000508532	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000508532	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000508532	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-3UTR	ENST00000508532	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000504948	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000504948	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000504948	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000504948	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000504948	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000504948	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-3UTR	ENST00000504948	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000513801	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-5UTR	ENST00000513801	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000513801	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000513801	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000513801	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-intron	ENST00000513801	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-3UTR	ENST00000513801	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000328560	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000328560	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000328560	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000328560	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000328560	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000328560	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000328560	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000428331	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000428331	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000428331	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000428331	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000428331	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000428331	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000428331	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000359644	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000359644	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000359644	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000359644	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000359644	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000359644	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000359644	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000422190	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000422190	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000422190	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000422190	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000422190	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000422190	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000422190	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000282488		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000282486		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000355460		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000509150	ENST00000493459		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000324210		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000498502		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000545754		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000357472		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-5UTR	ENST00000509150	ENST00000324196		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000509150	ENST00000485910		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000509150	ENST00000463374		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000509150	ENST00000492948		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-intron	ENST00000509150	ENST00000485509		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
intron-3UTR	ENST00000509150	ENST00000461436		TCGA	LD	LUSC	TCGA-56-8622-01A	ATP2C1	chr3	130613181	+	MBNL1	chr3	152017194	+
5UTR-3CDS	ENST00000543086	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-5UTR	ENST00000543086	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-intron	ENST00000543086	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-3CDS	ENST00000546231	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-5UTR	ENST00000546231	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-intron	ENST00000546231	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-3CDS	ENST00000397203	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-5UTR	ENST00000397203	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-intron	ENST00000397203	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-3CDS	ENST00000360905	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-5UTR	ENST00000360905	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
5UTR-intron	ENST00000360905	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000589028	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000589028	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000589028	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000355446	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000355446	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000355446	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000536573	ENST00000229238		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000536573	ENST00000543164		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000536573	ENST00000543703		TCGA	LD	LUSC	TCGA-56-8622-01A	ERC1	chr12	1100488	+	MRPL51	chr12	6602138	-
Frame-shit	ENST00000317799	ENST00000473706		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000317799	ENST00000380834		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000317799	ENST00000260662		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
5CDS-intron	ENST00000317799	ENST00000395845		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000405867	ENST00000473706		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000405867	ENST00000380834		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000405867	ENST00000260662		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
5CDS-intron	ENST00000405867	ENST00000395845		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000537713	ENST00000473706		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000537713	ENST00000380834		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000537713	ENST00000260662		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
5CDS-intron	ENST00000537713	ENST00000395845		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000545822	ENST00000473706		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000545822	ENST00000380834		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
Frame-shit	ENST00000545822	ENST00000260662		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
5CDS-intron	ENST00000545822	ENST00000395845		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
3UTR-3CDS	ENST00000494615	ENST00000473706		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
3UTR-3CDS	ENST00000494615	ENST00000380834		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
3UTR-3CDS	ENST00000494615	ENST00000260662		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
3UTR-intron	ENST00000494615	ENST00000395845		TCGA	LD	LUSC	TCGA-56-8625-01A	HADHB	chr2	26500028	+	CENPO	chr2	25037245	+
5CDS-intron	ENST00000382456	ENST00000446828		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000424227		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000443863		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000535426		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000265026		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000448876		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000454237		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000382456	ENST00000438798		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000446828		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000424227		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000443863		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000535426		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000265026		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000448876		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000454237		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000411763	ENST00000438798		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000446828		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000424227		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000443863		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000535426		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000265026		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000448876		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000454237		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000292807	ENST00000438798		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000446828		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000424227		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000443863		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000535426		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000265026		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000448876		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000454237		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000439647	ENST00000438798		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000446828		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000424227		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000443863		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000535426		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000265026		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000448876		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000454237		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
3UTR-intron	ENST00000461733	ENST00000438798		TCGA	LD	LUSC	TCGA-56-8628-01A	AP2M1	chr3	183898772	+	MAP3K13	chr3	185046412	+
Frame-shit	ENST00000313143	ENST00000437079		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000313143	ENST00000287546		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000313143	ENST00000436792		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000313143	ENST00000446204		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
5CDS-intron	ENST00000313143	ENST00000424463		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
5CDS-intron	ENST00000313143	ENST00000463687		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000431765	ENST00000437079		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000431765	ENST00000287546		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000431765	ENST00000436792		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
Frame-shit	ENST00000431765	ENST00000446204		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
5CDS-intron	ENST00000431765	ENST00000424463		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
5CDS-intron	ENST00000431765	ENST00000463687		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
intron-3CDS	ENST00000462665	ENST00000437079		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
intron-3CDS	ENST00000462665	ENST00000287546		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
intron-3CDS	ENST00000462665	ENST00000436792		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
intron-3CDS	ENST00000462665	ENST00000446204		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
intron-intron	ENST00000462665	ENST00000424463		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
intron-intron	ENST00000462665	ENST00000463687		TCGA	LD	LUSC	TCGA-56-8628-01A	DVL3	chr3	183888517	+	VPS8	chr3	184580685	+
5CDS-intron	ENST00000389286	ENST00000560386		TCGA	LD	LUSC	TCGA-56-8629-01A	PRTG	chr15	55971484	-	DPH6	chr15	35834708	-
5CDS-intron	ENST00000389286	ENST00000256538		TCGA	LD	LUSC	TCGA-56-8629-01A	PRTG	chr15	55971484	-	DPH6	chr15	35834708	-
5CDS-intron	ENST00000389286	ENST00000440392		TCGA	LD	LUSC	TCGA-56-8629-01A	PRTG	chr15	55971484	-	DPH6	chr15	35834708	-
intron-intron	ENST00000561292	ENST00000560386		TCGA	LD	LUSC	TCGA-56-8629-01A	PRTG	chr15	55971484	-	DPH6	chr15	35834708	-
intron-intron	ENST00000561292	ENST00000256538		TCGA	LD	LUSC	TCGA-56-8629-01A	PRTG	chr15	55971484	-	DPH6	chr15	35834708	-
intron-intron	ENST00000561292	ENST00000440392		TCGA	LD	LUSC	TCGA-56-8629-01A	PRTG	chr15	55971484	-	DPH6	chr15	35834708	-
In-frame	ENST00000399799	ENST00000259605		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
In-frame	ENST00000399799	ENST00000353739		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000399799	ENST00000357058		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000399799	ENST00000350199		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000399799	ENST00000377885		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000399799	ENST00000377877		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000399799	ENST00000491349		TCGA	LD	LUSC	TCGA-56-A49D-01A	ROCK1	chr18	18690779	-	RNF38	chr9	36376124	-
Frame-shit	ENST00000381501	ENST00000274901		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000381501	ENST00000398661		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000381501	ENST00000370850		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000381501	ENST00000508459		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
Frame-shit	ENST00000381501	ENST00000308161		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
5CDS-intron	ENST00000381501	ENST00000428842		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
5CDS-intron	ENST00000381501	ENST00000358072		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
5CDS-5UTR	ENST00000381501	ENST00000507223		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-3CDS	ENST00000511471	ENST00000274901		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-3CDS	ENST00000511471	ENST00000398661		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-3CDS	ENST00000511471	ENST00000370850		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-3CDS	ENST00000511471	ENST00000508459		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-3CDS	ENST00000511471	ENST00000308161		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-intron	ENST00000511471	ENST00000428842		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-intron	ENST00000511471	ENST00000358072		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
intron-5UTR	ENST00000511471	ENST00000507223		TCGA	LD	LUSC	TCGA-56-A49D-01A	TEC	chr4	48230494	-	HMGCLL1	chr6	55304357	-
5CDS-5UTR	ENST00000005260	ENST00000265742		TCGA	LD	LUSC	TCGA-56-A4BW-01A	BAIAP2L1	chr7	98030114	-	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000005260	ENST00000486698		TCGA	LD	LUSC	TCGA-56-A4BW-01A	BAIAP2L1	chr7	98030114	-	ANKIB1	chr7	91924203	+
5UTR-5UTR	ENST00000462558	ENST00000265742		TCGA	LD	LUSC	TCGA-56-A4BW-01A	BAIAP2L1	chr7	98030114	-	ANKIB1	chr7	91924203	+
5UTR-intron	ENST00000462558	ENST00000486698		TCGA	LD	LUSC	TCGA-56-A4BW-01A	BAIAP2L1	chr7	98030114	-	ANKIB1	chr7	91924203	+
Frame-shit	ENST00000486715	ENST00000341319		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
5CDS-intron	ENST00000486715	ENST00000487643		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
intron-3CDS	ENST00000478576	ENST00000341319		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
intron-intron	ENST00000478576	ENST00000487643		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
Frame-shit	ENST00000264263	ENST00000341319		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
5CDS-intron	ENST00000264263	ENST00000487643		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
intron-3CDS	ENST00000490261	ENST00000341319		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
intron-intron	ENST00000490261	ENST00000487643		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GFM1	chr3	158402457	+	KLHL6	chr3	183226296	-
In-frame	ENST00000340473	ENST00000379151		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
In-frame	ENST00000340473	ENST00000361121		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
5CDS-intron	ENST00000340473	ENST00000357537		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
5CDS-intron	ENST00000340473	ENST00000473119		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
intron-3CDS	ENST00000494087	ENST00000379151		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
intron-3CDS	ENST00000494087	ENST00000361121		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
intron-intron	ENST00000494087	ENST00000357537		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
intron-intron	ENST00000494087	ENST00000473119		TCGA	LD	LUSC	TCGA-56-A4BX-01A	GTF2F2	chr13	45725966	+	GPALPP1	chr13	45578440	+
intron-3UTR	ENST00000430069	ENST00000462801		TCGA	LD	LUSC	TCGA-56-A4BX-01A	TBL1XR1	chr3	176914909	-	PEX5L-AS2	chr3	179619714	+
5UTR-3UTR	ENST00000457928	ENST00000462801		TCGA	LD	LUSC	TCGA-56-A4BX-01A	TBL1XR1	chr3	176914909	-	PEX5L-AS2	chr3	179619714	+
5CDS-5UTR	ENST00000305135	ENST00000232564		TCGA	LD	LUSC	TCGA-56-A4BX-01A	YEATS2	chr3	183436380	+	GNB4	chr3	179144030	-
5CDS-5UTR	ENST00000305135	ENST00000468623		TCGA	LD	LUSC	TCGA-56-A4BX-01A	YEATS2	chr3	183436380	+	GNB4	chr3	179144030	-
5CDS-intron	ENST00000305135	ENST00000465153		TCGA	LD	LUSC	TCGA-56-A4BX-01A	YEATS2	chr3	183436380	+	GNB4	chr3	179144030	-
5UTR-intron	ENST00000242810	ENST00000326505		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-intron	ENST00000242810	ENST00000460419		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-intron	ENST00000242810	ENST00000465010		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-3UTR	ENST00000242810	ENST00000462559		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-intron	ENST00000454652	ENST00000326505		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-intron	ENST00000454652	ENST00000460419		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-intron	ENST00000454652	ENST00000465010		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5UTR-3UTR	ENST00000454652	ENST00000462559		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000476808	ENST00000326505		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000476808	ENST00000460419		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000476808	ENST00000465010		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
intron-3UTR	ENST00000476808	ENST00000462559		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
3UTR-intron	ENST00000461813	ENST00000326505		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
3UTR-intron	ENST00000461813	ENST00000460419		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
3UTR-intron	ENST00000461813	ENST00000465010		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
3UTR-3UTR	ENST00000461813	ENST00000462559		TCGA	LD	LUSC	TCGA-56-A4BY-01A	KLHL24	chr3	183353581	+	B3GNT5	chr3	183005393	+
5CDS-5UTR	ENST00000429544	ENST00000432054		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000429544	ENST00000393238		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000429544	ENST00000426664		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000429544	ENST00000329333		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000429544	ENST00000515024		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000249910	ENST00000432054		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000249910	ENST00000393238		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000249910	ENST00000426664		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000249910	ENST00000329333		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000249910	ENST00000515024		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000503197	ENST00000432054		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000503197	ENST00000393238		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000503197	ENST00000426664		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000503197	ENST00000329333		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-intron	ENST00000503197	ENST00000515024		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000393278	ENST00000432054		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000393278	ENST00000393238		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000393278	ENST00000426664		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-5UTR	ENST00000393278	ENST00000329333		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5CDS-intron	ENST00000393278	ENST00000515024		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000507208	ENST00000432054		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000507208	ENST00000393238		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000507208	ENST00000426664		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000507208	ENST00000329333		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-intron	ENST00000507208	ENST00000515024		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000509587	ENST00000432054		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000509587	ENST00000393238		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000509587	ENST00000426664		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-5UTR	ENST00000509587	ENST00000329333		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
intron-intron	ENST00000509587	ENST00000515024		TCGA	LD	LUSC	TCGA-56-A4BY-01A	MBD4	chr3	129151346	-	TMCC1	chr3	129390107	-
5UTR-3CDS	ENST00000361283	ENST00000256339		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
5UTR-3CDS	ENST00000361283	ENST00000555664		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
5UTR-3CDS	ENST00000361283	ENST00000553484		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
5UTR-3CDS	ENST00000361283	ENST00000393151		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
intron-3CDS	ENST00000478022	ENST00000256339		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
intron-3CDS	ENST00000478022	ENST00000555664		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
intron-3CDS	ENST00000478022	ENST00000553484		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
intron-3CDS	ENST00000478022	ENST00000393151		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CHAMP1	chr13	115080118	+	UNC79	chr14	94103562	+
Frame-shit	ENST00000375441	ENST00000375353		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
5CDS-intron	ENST00000375441	ENST00000467169		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
Frame-shit	ENST00000451881	ENST00000375353		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
5CDS-intron	ENST00000451881	ENST00000467169		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
Frame-shit	ENST00000326335	ENST00000375353		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
5CDS-intron	ENST00000326335	ENST00000467169		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
Frame-shit	ENST00000375440	ENST00000375353		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
5CDS-intron	ENST00000375440	ENST00000467169		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
intron-3CDS	ENST00000463426	ENST00000375353		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
intron-intron	ENST00000463426	ENST00000467169		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	CUL4A	chr13	113897359	+	TMEM255B	chr13	114502312	+
intron-3UTR	ENST00000314891	ENST00000435680		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-3UTR	ENST00000314891	ENST00000425768		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-intron	ENST00000314891	ENST00000314404		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-intron	ENST00000314891	ENST00000563714		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-3UTR	ENST00000562431	ENST00000435680		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-3UTR	ENST00000562431	ENST00000425768		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-intron	ENST00000562431	ENST00000314404		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
intron-intron	ENST00000562431	ENST00000563714		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	LPCAT4	chr15	34653407	-	MTMR10	chr15	31231696	-
In-frame	ENST00000375608	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375608	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375608	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000375608	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000442652	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000442652	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000442652	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000442652	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000375604	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375604	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375604	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000375604	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000397030	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000397030	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000397030	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000397030	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000535094	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000535094	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000535094	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000535094	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000421756	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000421756	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000421756	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000421756	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000375601	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375601	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375601	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000375601	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397036	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397036	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397036	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-intron	ENST00000397036	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000434480	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000434480	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000434480	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000434480	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000423482	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000423482	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000423482	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000423482	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
In-frame	ENST00000375597	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375597	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000375597	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
5CDS-intron	ENST00000375597	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397024	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397024	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397024	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-intron	ENST00000397024	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000480321	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000480321	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000480321	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-intron	ENST00000480321	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397021	ENST00000409306		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397021	ENST00000375551		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-3CDS	ENST00000397021	ENST00000375559		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
intron-intron	ENST00000397021	ENST00000483537		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	MCF2L	chr13	113720484	+	F10	chr13	113803230	+
Frame-shit	ENST00000337344	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000337344	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000337344	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-5UTR	ENST00000337344	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
Frame-shit	ENST00000375477	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000375477	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000375477	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-5UTR	ENST00000375477	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
Frame-shit	ENST00000375479	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000375479	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000375479	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-5UTR	ENST00000375479	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-3CDS	ENST00000493650	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-intron	ENST00000493650	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-intron	ENST00000493650	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-5UTR	ENST00000493650	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-3CDS	ENST00000375459	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-intron	ENST00000375459	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-intron	ENST00000375459	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-5UTR	ENST00000375459	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
Frame-shit	ENST00000246505	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000246505	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-intron	ENST00000246505	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
5CDS-5UTR	ENST00000246505	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-3CDS	ENST00000375457	ENST00000375431		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-intron	ENST00000375457	ENST00000326039		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-intron	ENST00000375457	ENST00000375430		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
intron-5UTR	ENST00000375457	ENST00000476439		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	PCID2	chr13	113862913	-	GRTP1	chr13	114018225	-
3UTR-intron	ENST00000477063	ENST00000518740		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	SEC22A	chr3	122944144	+	TXNRD3	chr3	126352894	-
5CDS-intron	ENST00000492595	ENST00000518740		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	SEC22A	chr3	122944144	+	TXNRD3	chr3	126352894	-
intron-intron	ENST00000481965	ENST00000518740		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	SEC22A	chr3	122944144	+	TXNRD3	chr3	126352894	-
5CDS-intron	ENST00000309934	ENST00000518740		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	SEC22A	chr3	122944144	+	TXNRD3	chr3	126352894	-
In-frame	ENST00000375370	ENST00000335288		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114265377	+	ATP4B	chr13	114309257	-
5UTR-3CDS	ENST00000538138	ENST00000335288		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114265377	+	ATP4B	chr13	114309257	-
3UTR-3CDS	ENST00000465174	ENST00000335288		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114265377	+	ATP4B	chr13	114309257	-
5UTR-3CDS	ENST00000544902	ENST00000335288		TCGA	LD	LUSC	TCGA-56-A4ZK-01A	TFDP1	chr13	114265377	+	ATP4B	chr13	114309257	-
Frame-shit	ENST00000301067	ENST00000308025		TCGA	LD	LUSC	TCGA-56-A62T-01A	KMT2D	chr12	49418361	-	DDX23	chr12	49239565	-
5CDS-5UTR	ENST00000301067	ENST00000553182		TCGA	LD	LUSC	TCGA-56-A62T-01A	KMT2D	chr12	49418361	-	DDX23	chr12	49239565	-
intron-3CDS	ENST00000549743	ENST00000308025		TCGA	LD	LUSC	TCGA-56-A62T-01A	KMT2D	chr12	49418361	-	DDX23	chr12	49239565	-
intron-5UTR	ENST00000549743	ENST00000553182		TCGA	LD	LUSC	TCGA-56-A62T-01A	KMT2D	chr12	49418361	-	DDX23	chr12	49239565	-
Frame-shit	ENST00000303375	ENST00000262291		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
Frame-shit	ENST00000303375	ENST00000537567		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
Frame-shit	ENST00000303375	ENST00000539763		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
Frame-shit	ENST00000303375	ENST00000536180		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
In-frame	ENST00000303375	ENST00000545362		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
5CDS-3UTR	ENST00000303375	ENST00000588617		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000446119	ENST00000262291		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000446119	ENST00000537567		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000446119	ENST00000539763		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000446119	ENST00000536180		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000446119	ENST00000545362		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3UTR	ENST00000446119	ENST00000588617		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000580916	ENST00000262291		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000580916	ENST00000537567		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000580916	ENST00000539763		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000580916	ENST00000536180		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000580916	ENST00000545362		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3UTR	ENST00000580916	ENST00000588617		TCGA	LD	LUSC	TCGA-58-8386-01A	MRC2	chr17	60751531	+	VMP1	chr17	57917129	+
intron-3CDS	ENST00000262305	ENST00000397770		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000262305	ENST00000316163		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000262305	ENST00000359740		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000262305	ENST00000397768		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-intron	ENST00000262305	ENST00000431291		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
Frame-shit	ENST00000457159	ENST00000397770		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
Frame-shit	ENST00000457159	ENST00000316163		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
Frame-shit	ENST00000457159	ENST00000359740		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
Frame-shit	ENST00000457159	ENST00000397768		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
5CDS-intron	ENST00000457159	ENST00000431291		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000450428	ENST00000397770		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000450428	ENST00000316163		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000450428	ENST00000359740		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000450428	ENST00000397768		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-intron	ENST00000450428	ENST00000431291		TCGA	LD	LUSC	TCGA-58-8386-01A	RAB11FIP3	chr16	541268	+	RGS11	chr16	325498	-
intron-3CDS	ENST00000372189	ENST00000373053		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000372189	ENST00000357157		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000372189	ENST00000536019		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-intron	ENST00000372189	ENST00000605416		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
In-frame	ENST00000372195	ENST00000373053		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
In-frame	ENST00000372195	ENST00000357157		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
In-frame	ENST00000372195	ENST00000536019		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
5CDS-intron	ENST00000372195	ENST00000605416		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000372190	ENST00000373053		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000372190	ENST00000357157		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000372190	ENST00000536019		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-intron	ENST00000372190	ENST00000605416		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000481260	ENST00000373053		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000481260	ENST00000357157		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000481260	ENST00000536019		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
intron-intron	ENST00000481260	ENST00000605416		TCGA	LD	LUSC	TCGA-58-8386-01A	RAPGEF1	chr9	134615157	-	MCU	chr10	74594117	+
Frame-shit	ENST00000379051	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000379051	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000379051	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
intron-3CDS	ENST00000379033	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
intron-intron	ENST00000379033	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
intron-intron	ENST00000379033	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
Frame-shit	ENST00000298428	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000298428	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000298428	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
3UTR-3CDS	ENST00000495368	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
3UTR-intron	ENST00000495368	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
3UTR-intron	ENST00000495368	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
Frame-shit	ENST00000304267	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000304267	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000304267	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
Frame-shit	ENST00000379020	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000379020	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000379020	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
Frame-shit	ENST00000379017	ENST00000378847		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000379017	ENST00000487696		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000379017	ENST00000378845		TCGA	LD	LUSC	TCGA-58-8388-01A	SEC61A2	chr10	12178169	+	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000356166	ENST00000287461		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
5CDS-5UTR	ENST00000356166	ENST00000566673		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
5UTR-intron	ENST00000568722	ENST00000287461		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
5UTR-5UTR	ENST00000568722	ENST00000566673		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
3UTR-intron	ENST00000482749	ENST00000287461		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
3UTR-5UTR	ENST00000482749	ENST00000566673		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
intron-intron	ENST00000395073	ENST00000287461		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
intron-5UTR	ENST00000395073	ENST00000566673		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
intron-intron	ENST00000287468	ENST00000287461		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
intron-5UTR	ENST00000287468	ENST00000566673		TCGA	LD	LUSC	TCGA-58-8390-01A	FBRS	chr16	30674180	+	ZNF689	chr16	30635190	-
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	LUSC	TCGA-58-8391-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5UTR-5UTR	ENST00000335999	ENST00000395170		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000335999	ENST00000547306		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000335999	ENST00000316299		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000335999	ENST00000548065		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000335999	ENST00000552212		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000480927	ENST00000395170		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000480927	ENST00000547306		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000480927	ENST00000316299		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000480927	ENST00000548065		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5UTR-5UTR	ENST00000480927	ENST00000552212		TCGA	LD	LUSC	TCGA-58-A46K-01A	NCKAP5L	chr12	50222105	-	PRKAG1	chr12	49406893	-
5CDS-intron	ENST00000305135	ENST00000334444		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
5CDS-intron	ENST00000305135	ENST00000265586		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
5CDS-intron	ENST00000305135	ENST00000492216		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
5CDS-intron	ENST00000305135	ENST00000427120		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
5CDS-intron	ENST00000305135	ENST00000392579		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
5CDS-intron	ENST00000305135	ENST00000382494		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
5CDS-intron	ENST00000305135	ENST00000446941		TCGA	LD	LUSC	TCGA-58-A46L-01A	YEATS2	chr3	183480067	+	ABCC5	chr3	183719039	-
intron-3CDS	ENST00000393408	ENST00000239144		TCGA	LD	LUSC	TCGA-60-2695-01A	CBX1	chr17	46178630	-	HOXB8	chr17	46690868	-
intron-3CDS	ENST00000393408	ENST00000576562		TCGA	LD	LUSC	TCGA-60-2695-01A	CBX1	chr17	46178630	-	HOXB8	chr17	46690868	-
5UTR-3CDS	ENST00000225603	ENST00000239144		TCGA	LD	LUSC	TCGA-60-2695-01A	CBX1	chr17	46178630	-	HOXB8	chr17	46690868	-
5UTR-3CDS	ENST00000225603	ENST00000576562		TCGA	LD	LUSC	TCGA-60-2695-01A	CBX1	chr17	46178630	-	HOXB8	chr17	46690868	-
5UTR-3CDS	ENST00000495350	ENST00000239144		TCGA	LD	LUSC	TCGA-60-2695-01A	CBX1	chr17	46178630	-	HOXB8	chr17	46690868	-
5UTR-3CDS	ENST00000495350	ENST00000576562		TCGA	LD	LUSC	TCGA-60-2695-01A	CBX1	chr17	46178630	-	HOXB8	chr17	46690868	-
5CDS-intron	ENST00000355957	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000355957	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361770	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000359617	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371141	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000371132	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
3UTR-intron	ENST00000496003	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000358029	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000313949		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371098		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371075		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371100		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371099		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371102		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000464624		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000306120		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371095		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371085		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000354359		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000265620		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000306090		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
5CDS-intron	ENST00000361830	ENST00000371081		TCGA	LD	LUSC	TCGA-60-2696-01A	STX16	chr20	57245659	+	GNAS	chr20	57463604	+
In-frame	ENST00000225964	ENST00000331595		TCGA	LD	LUSC	TCGA-60-2703-01A	COL1A1	chr17	48269149	-	BGN	chrX	152771321	+
5CDS-3UTR	ENST00000225964	ENST00000480756		TCGA	LD	LUSC	TCGA-60-2703-01A	COL1A1	chr17	48269149	-	BGN	chrX	152771321	+
Frame-shit	ENST00000254323	ENST00000586600		TCGA	LD	LUSC	TCGA-60-2703-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13865103	+
Frame-shit	ENST00000254323	ENST00000221554		TCGA	LD	LUSC	TCGA-60-2703-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13865103	+
5CDS-intron	ENST00000254323	ENST00000587019		TCGA	LD	LUSC	TCGA-60-2703-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13865103	+
Frame-shit	ENST00000440752	ENST00000586600		TCGA	LD	LUSC	TCGA-60-2703-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13865103	+
Frame-shit	ENST00000440752	ENST00000221554		TCGA	LD	LUSC	TCGA-60-2703-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13865103	+
5CDS-intron	ENST00000440752	ENST00000587019		TCGA	LD	LUSC	TCGA-60-2703-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13865103	+
In-frame	ENST00000225719	ENST00000356175		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
In-frame	ENST00000225719	ENST00000358273		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000225719	ENST00000431387		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000225719	ENST00000581113		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000225719	ENST00000417592		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000225719	ENST00000444181		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
In-frame	ENST00000543464	ENST00000356175		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
In-frame	ENST00000543464	ENST00000358273		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000543464	ENST00000431387		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000543464	ENST00000581113		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000543464	ENST00000417592		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5CDS-intron	ENST00000543464	ENST00000444181		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
intron-3CDS	ENST00000584051	ENST00000356175		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
intron-3CDS	ENST00000584051	ENST00000358273		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
intron-intron	ENST00000584051	ENST00000431387		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
intron-intron	ENST00000584051	ENST00000581113		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
intron-intron	ENST00000584051	ENST00000417592		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
intron-intron	ENST00000584051	ENST00000444181		TCGA	LD	LUSC	TCGA-60-2704-01A	CPD	chr17	28766095	+	NF1	chr17	29676138	+
5UTR-3CDS	ENST00000367660	ENST00000359015		TCGA	LD	LUSC	TCGA-60-2706-01A	ABRACL	chr6	139350012	+	MAP3K5	chr6	137041727	-
5UTR-intron	ENST00000367660	ENST00000355845		TCGA	LD	LUSC	TCGA-60-2706-01A	ABRACL	chr6	139350012	+	MAP3K5	chr6	137041727	-
5UTR-intron	ENST00000367660	ENST00000463140		TCGA	LD	LUSC	TCGA-60-2706-01A	ABRACL	chr6	139350012	+	MAP3K5	chr6	137041727	-
5UTR-3CDS	ENST00000461027	ENST00000359015		TCGA	LD	LUSC	TCGA-60-2706-01A	ABRACL	chr6	139350012	+	MAP3K5	chr6	137041727	-
5UTR-intron	ENST00000461027	ENST00000355845		TCGA	LD	LUSC	TCGA-60-2706-01A	ABRACL	chr6	139350012	+	MAP3K5	chr6	137041727	-
5UTR-intron	ENST00000461027	ENST00000463140		TCGA	LD	LUSC	TCGA-60-2706-01A	ABRACL	chr6	139350012	+	MAP3K5	chr6	137041727	-
5CDS-5UTR	ENST00000261735	ENST00000427025		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
5CDS-intron	ENST00000261735	ENST00000343505		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
5CDS-intron	ENST00000261735	ENST00000479393		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
5CDS-5UTR	ENST00000455836	ENST00000427025		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
5CDS-intron	ENST00000455836	ENST00000343505		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
5CDS-intron	ENST00000455836	ENST00000479393		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
intron-5UTR	ENST00000546477	ENST00000427025		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
intron-intron	ENST00000546477	ENST00000343505		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
intron-intron	ENST00000546477	ENST00000479393		TCGA	LD	LUSC	TCGA-60-2706-01A	ERP29	chr12	112451413	+	NHSL1	chr6	138893198	-
intron-5UTR	ENST00000607272	ENST00000416067		TCGA	LD	LUSC	TCGA-60-2706-01A	MSH6	chr2	48010632	+	TEKT4P2	chr21	9966380	-
5CDS-5UTR	ENST00000234420	ENST00000416067		TCGA	LD	LUSC	TCGA-60-2706-01A	MSH6	chr2	48010632	+	TEKT4P2	chr21	9966380	-
intron-5UTR	ENST00000540021	ENST00000416067		TCGA	LD	LUSC	TCGA-60-2706-01A	MSH6	chr2	48010632	+	TEKT4P2	chr21	9966380	-
intron-5UTR	ENST00000538136	ENST00000416067		TCGA	LD	LUSC	TCGA-60-2706-01A	MSH6	chr2	48010632	+	TEKT4P2	chr21	9966380	-
5CDS-intron	ENST00000261712	ENST00000333942		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000358365		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000583994		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000545287		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000354266		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000394692		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000581094		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000580976		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000333942		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000358365		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000583994		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000545287		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000354266		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000394692		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000581094		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000580976		TCGA	LD	LUSC	TCGA-60-2706-01A	PSMD11	chr17	30781637	+	RHOT1	chr17	30580104	+
5CDS-5UTR	ENST00000341084	ENST00000520686		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000521988		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000537541		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000518748		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000523580		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000520430		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000517858		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-intron	ENST00000341084	ENST00000517540		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000378861		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000524037		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000521617		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000519069		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000524107		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000341084	ENST00000519969		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000520686		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000521988		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000537541		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000518748		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000523580		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000520430		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000517858		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-intron	ENST00000519449	ENST00000517540		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000378861		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000524037		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000521617		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000519069		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000524107		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-5UTR	ENST00000519449	ENST00000519969		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000520686		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000521988		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000537541		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000518748		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000523580		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000520430		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000517858		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-intron	ENST00000523255	ENST00000517540		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000378861		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000524037		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000521617		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000519069		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000524107		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
intron-5UTR	ENST00000523255	ENST00000519969		TCGA	LD	LUSC	TCGA-60-2706-01A	RNF19A	chr8	101299729	-	TRIQK	chr8	93929238	-
5CDS-3UTR	ENST00000252840	ENST00000593968		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000252840	ENST00000316401		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000252840	ENST00000597824		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000414706	ENST00000593968		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000414706	ENST00000316401		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000414706	ENST00000597824		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000439035	ENST00000593968		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000439035	ENST00000316401		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-3UTR	ENST00000439035	ENST00000597824		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076518	+	SIGLECL1	chr19	51771825	+
5CDS-5UTR	ENST00000252840	ENST00000596053		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000252840	ENST00000596143		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000252840	ENST00000601416		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000252840	ENST00000291770		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-intron	ENST00000252840	ENST00000600535		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000414706	ENST00000596053		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000414706	ENST00000596143		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000414706	ENST00000601416		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000414706	ENST00000291770		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-intron	ENST00000414706	ENST00000600535		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000439035	ENST00000596053		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000439035	ENST00000596143		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000439035	ENST00000601416		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-5UTR	ENST00000439035	ENST00000291770		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-intron	ENST00000439035	ENST00000600535		TCGA	LD	LUSC	TCGA-60-2706-01A	ZNF557	chr19	7076517	+	ZNF714	chr19	21266783	+
5CDS-intron	ENST00000428559	ENST00000010404		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000428559	ENST00000396210		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000428559	ENST00000535309		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000428559	ENST00000540056		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000428559	ENST00000396209		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000428559	ENST00000396207		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000428559	ENST00000359720		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000010404		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000396210		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000535309		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000540056		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000396209		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000396207		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000532964	ENST00000359720		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000010404		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000396210		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000535309		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000540056		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000396209		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000396207		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
5CDS-intron	ENST00000526530	ENST00000359720		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000010404		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000396210		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000535309		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000540056		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000396209		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000396207		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-intron	ENST00000532573	ENST00000359720		TCGA	LD	LUSC	TCGA-60-2708-01A	DERA	chr12	16115881	+	MGST1	chr12	16742462	+
intron-3CDS	ENST00000322213	ENST00000338222		TCGA	LD	LUSC	TCGA-60-2709-01A	SMC1A	chrX	53431924	-	UBQLN2	chrX	56591222	+
intron-3CDS	ENST00000469129	ENST00000338222		TCGA	LD	LUSC	TCGA-60-2709-01A	SMC1A	chrX	53431924	-	UBQLN2	chrX	56591222	+
intron-3CDS	ENST00000375340	ENST00000338222		TCGA	LD	LUSC	TCGA-60-2709-01A	SMC1A	chrX	53431924	-	UBQLN2	chrX	56591222	+
Frame-shit	ENST00000369705	ENST00000369747		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
5CDS-5UTR	ENST00000369705	ENST00000503942		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
5CDS-intron	ENST00000369705	ENST00000369745		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
Frame-shit	ENST00000541327	ENST00000369747		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
5CDS-5UTR	ENST00000541327	ENST00000503942		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
5CDS-intron	ENST00000541327	ENST00000369745		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
In-frame	ENST00000543031	ENST00000369747		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
5CDS-5UTR	ENST00000543031	ENST00000503942		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
5CDS-intron	ENST00000543031	ENST00000369745		TCGA	LD	LUSC	TCGA-60-2710-01A	ME1	chr6	84055892	-	UBE3D	chr6	83602761	-
Frame-shit	ENST00000446845	ENST00000448498		TCGA	LD	LUSC	TCGA-60-2710-01A	OXSR1	chr3	38207437	+	SLC22A14	chr3	38347795	+
Frame-shit	ENST00000446845	ENST00000273173		TCGA	LD	LUSC	TCGA-60-2710-01A	OXSR1	chr3	38207437	+	SLC22A14	chr3	38347795	+
Frame-shit	ENST00000311806	ENST00000448498		TCGA	LD	LUSC	TCGA-60-2710-01A	OXSR1	chr3	38207437	+	SLC22A14	chr3	38347795	+
Frame-shit	ENST00000311806	ENST00000273173		TCGA	LD	LUSC	TCGA-60-2710-01A	OXSR1	chr3	38207437	+	SLC22A14	chr3	38347795	+
intron-3CDS	ENST00000492714	ENST00000448498		TCGA	LD	LUSC	TCGA-60-2710-01A	OXSR1	chr3	38207437	+	SLC22A14	chr3	38347795	+
intron-3CDS	ENST00000492714	ENST00000273173		TCGA	LD	LUSC	TCGA-60-2710-01A	OXSR1	chr3	38207437	+	SLC22A14	chr3	38347795	+
5CDS-intron	ENST00000497343	ENST00000326505		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-intron	ENST00000497343	ENST00000460419		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-intron	ENST00000497343	ENST00000465010		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-3UTR	ENST00000497343	ENST00000462559		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-intron	ENST00000498165	ENST00000326505		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-intron	ENST00000498165	ENST00000460419		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-intron	ENST00000498165	ENST00000465010		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
5CDS-3UTR	ENST00000498165	ENST00000462559		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000464260	ENST00000326505		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000464260	ENST00000460419		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000464260	ENST00000465010		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-3UTR	ENST00000464260	ENST00000462559		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000295839	ENST00000326505		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000295839	ENST00000460419		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000295839	ENST00000465010		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-3UTR	ENST00000295839	ENST00000462559		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000480117	ENST00000326505		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000480117	ENST00000460419		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-intron	ENST00000480117	ENST00000465010		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
intron-3UTR	ENST00000480117	ENST00000462559		TCGA	LD	LUSC	TCGA-60-2711-01A	PPM1L	chr3	160474495	+	B3GNT5	chr3	183005393	+
Frame-shit	ENST00000408982	ENST00000536255		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000408982	ENST00000381208		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000408982	ENST00000381209		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000408982	ENST00000327154		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000408982	ENST00000405578		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000408982	ENST00000574003		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000262477	ENST00000536255		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000262477	ENST00000381208		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000262477	ENST00000381209		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000262477	ENST00000327154		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000262477	ENST00000405578		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000262477	ENST00000574003		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000537505	ENST00000536255		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000537505	ENST00000381208		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000537505	ENST00000381209		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000537505	ENST00000327154		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000537505	ENST00000405578		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000537505	ENST00000574003		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000546142	ENST00000536255		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000546142	ENST00000381208		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000546142	ENST00000381209		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000546142	ENST00000327154		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000546142	ENST00000405578		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000546142	ENST00000574003		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000341923	ENST00000536255		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000341923	ENST00000381208		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000341923	ENST00000381209		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000341923	ENST00000327154		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000341923	ENST00000405578		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
Frame-shit	ENST00000341923	ENST00000574003		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000570487	ENST00000536255		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000570487	ENST00000381208		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000570487	ENST00000381209		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000570487	ENST00000327154		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000570487	ENST00000405578		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
intron-3CDS	ENST00000570487	ENST00000574003		TCGA	LD	LUSC	TCGA-60-2711-01A	RABEP1	chr17	5212117	+	RPAIN	chr17	5324616	+
In-frame	ENST00000368911	ENST00000422424		TCGA	LD	LUSC	TCGA-60-2712-01A	CDK19	chr6	111067329	-	FAM96B	chr16	66967642	-
Frame-shit	ENST00000323817	ENST00000422424		TCGA	LD	LUSC	TCGA-60-2712-01A	CDK19	chr6	111067329	-	FAM96B	chr16	66967642	-
intron-3CDS	ENST00000413605	ENST00000422424		TCGA	LD	LUSC	TCGA-60-2712-01A	CDK19	chr6	111067329	-	FAM96B	chr16	66967642	-
intron-3CDS	ENST00000497709	ENST00000422424		TCGA	LD	LUSC	TCGA-60-2712-01A	CDK19	chr6	111067329	-	FAM96B	chr16	66967642	-
intron-intron	ENST00000495222	ENST00000410534		TCGA	LD	LUSC	TCGA-60-2713-01A	OSCP1	chr1	36898023	-	SOX2-OT	chr3	181432973	+
5CDS-intron	ENST00000235532	ENST00000410534		TCGA	LD	LUSC	TCGA-60-2713-01A	OSCP1	chr1	36898023	-	SOX2-OT	chr3	181432973	+
5CDS-intron	ENST00000356637	ENST00000410534		TCGA	LD	LUSC	TCGA-60-2713-01A	OSCP1	chr1	36898023	-	SOX2-OT	chr3	181432973	+
5CDS-intron	ENST00000433045	ENST00000410534		TCGA	LD	LUSC	TCGA-60-2713-01A	OSCP1	chr1	36898023	-	SOX2-OT	chr3	181432973	+
5CDS-intron	ENST00000315643	ENST00000410534		TCGA	LD	LUSC	TCGA-60-2713-01A	OSCP1	chr1	36898023	-	SOX2-OT	chr3	181432973	+
5CDS-intron	ENST00000354267	ENST00000410534		TCGA	LD	LUSC	TCGA-60-2713-01A	OSCP1	chr1	36898023	-	SOX2-OT	chr3	181432973	+
5CDS-intron	ENST00000345093	ENST00000548241		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5CDS-intron	ENST00000345093	ENST00000267116		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5UTR-intron	ENST00000394013	ENST00000548241		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5UTR-intron	ENST00000394013	ENST00000267116		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5CDS-intron	ENST00000552656	ENST00000548241		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5CDS-intron	ENST00000552656	ENST00000267116		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5CDS-intron	ENST00000552244	ENST00000548241		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
5CDS-intron	ENST00000552244	ENST00000267116		TCGA	LD	LUSC	TCGA-60-2713-01A	RNF41	chr12	56607742	-	ANKRD52	chr12	56639380	-
Frame-shit	ENST00000348405	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000348405	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000348405	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000513858	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000513858	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000513858	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000395310	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000395310	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000395310	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000443462	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000443462	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000443462	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000509142	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000509142	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000509142	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000326950	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000326950	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000326950	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000432794	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000432794	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000432794	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000311785	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000311785	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000311785	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000448323	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000448323	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000448323	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000505472	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000505472	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000505472	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000500777	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000500777	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000500777	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000508502	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000508502	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000508502	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000355196	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000355196	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000355196	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000264405	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000264405	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000264405	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000505984	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000505984	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000505984	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000508479	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
Frame-shit	ENST00000508479	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
In-frame	ENST00000508479	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000436790	ENST00000319540		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000436790	ENST00000273908		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
5UTR-3CDS	ENST00000436790	ENST00000282709		TCGA	LD	LUSC	TCGA-60-2714-01A	SEC31A	chr4	83795764	-	SCD5	chr4	83626566	-
intron-3CDS	ENST00000342228	ENST00000281708		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000342228	ENST00000603548		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000604872		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000296555		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000263981		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000393956		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000603841		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000342228	ENST00000604095		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000520262	ENST00000281708		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000520262	ENST00000603548		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520262	ENST00000604872		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520262	ENST00000296555		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520262	ENST00000263981		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520262	ENST00000393956		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520262	ENST00000603841		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520262	ENST00000604095		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000520179	ENST00000281708		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-3CDS	ENST00000520179	ENST00000603548		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000604872		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000296555		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000263981		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000393956		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000603841		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-intron	ENST00000520179	ENST00000604095		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-3CDS	ENST00000523340	ENST00000281708		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-3CDS	ENST00000523340	ENST00000603548		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000523340	ENST00000604872		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000523340	ENST00000296555		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000523340	ENST00000263981		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000523340	ENST00000393956		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000523340	ENST00000603841		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
5UTR-intron	ENST00000523340	ENST00000604095		TCGA	LD	LUSC	TCGA-60-2714-01A	SLC20A2	chr8	42396058	-	FBXW7	chr4	153247383	-
intron-5UTR	ENST00000583610	ENST00000309156		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000309185		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000394211		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000583610	ENST00000578702		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000583610	ENST00000445327		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000394209		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000394204		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000309156		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000309185		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000394211		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000394294	ENST00000578702		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000394294	ENST00000445327		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000394209		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000394204		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000309156		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000309185		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000394211		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000264658	ENST00000578702		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000264658	ENST00000445327		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000394209		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000394204		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000309156		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000309185		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000394211		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000577399	ENST00000578702		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000577399	ENST00000445327		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000394209		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000394204		TCGA	LD	LUSC	TCGA-60-2715-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5UTR-3CDS	ENST00000256544	ENST00000256545		TCGA	LD	LUSC	TCGA-60-2715-01A	KATNBL1	chr15	34502152	-	EMC7	chr15	34388215	-
5UTR-intron	ENST00000256544	ENST00000532113		TCGA	LD	LUSC	TCGA-60-2715-01A	KATNBL1	chr15	34502152	-	EMC7	chr15	34388215	-
intron-3CDS	ENST00000560915	ENST00000256545		TCGA	LD	LUSC	TCGA-60-2715-01A	KATNBL1	chr15	34502152	-	EMC7	chr15	34388215	-
intron-intron	ENST00000560915	ENST00000532113		TCGA	LD	LUSC	TCGA-60-2715-01A	KATNBL1	chr15	34502152	-	EMC7	chr15	34388215	-
In-frame	ENST00000359591	ENST00000398532		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
In-frame	ENST00000359591	ENST00000577454		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
In-frame	ENST00000359591	ENST00000578648		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
5CDS-5UTR	ENST00000359591	ENST00000579565		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
In-frame	ENST00000546834	ENST00000398532		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
In-frame	ENST00000546834	ENST00000577454		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
In-frame	ENST00000546834	ENST00000578648		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
5CDS-5UTR	ENST00000546834	ENST00000579565		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
3UTR-3CDS	ENST00000470660	ENST00000398532		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
3UTR-3CDS	ENST00000470660	ENST00000577454		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
3UTR-3CDS	ENST00000470660	ENST00000578648		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
3UTR-5UTR	ENST00000470660	ENST00000579565		TCGA	LD	LUSC	TCGA-60-2715-01A	LRP10	chr14	23346262	+	MSL1	chr17	38282436	+
Frame-shit	ENST00000444100	ENST00000263856		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000444100	ENST00000409727		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000444100	ENST00000409225		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000444100	ENST00000439940		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-5UTR	ENST00000444100	ENST00000494623		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
Frame-shit	ENST00000401576	ENST00000263856		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000401576	ENST00000409727		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000401576	ENST00000409225		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000401576	ENST00000439940		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-5UTR	ENST00000401576	ENST00000494623		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
3UTR-3CDS	ENST00000472678	ENST00000263856		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
3UTR-intron	ENST00000472678	ENST00000409727		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
3UTR-intron	ENST00000472678	ENST00000409225		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
3UTR-intron	ENST00000472678	ENST00000439940		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
3UTR-5UTR	ENST00000472678	ENST00000494623		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
Frame-shit	ENST00000295030	ENST00000263856		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000295030	ENST00000409727		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000295030	ENST00000409225		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000295030	ENST00000439940		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-5UTR	ENST00000295030	ENST00000494623		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
Frame-shit	ENST00000414712	ENST00000263856		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000414712	ENST00000409727		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000414712	ENST00000409225		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-intron	ENST00000414712	ENST00000439940		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
5CDS-5UTR	ENST00000414712	ENST00000494623		TCGA	LD	LUSC	TCGA-60-2715-01A	PEX13	chr2	61244986	+	CHMP3	chr2	86737602	-
In-frame	ENST00000574876	ENST00000293780		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000574876	ENST00000575637		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
In-frame	ENST00000572293	ENST00000293780		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000572293	ENST00000575637		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
In-frame	ENST00000269230	ENST00000293780		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000269230	ENST00000575637		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
In-frame	ENST00000301396	ENST00000293780		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000301396	ENST00000575637		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
Frame-shit	ENST00000436683	ENST00000293780		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
5CDS-intron	ENST00000436683	ENST00000575637		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
intron-3CDS	ENST00000570823	ENST00000293780		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
intron-intron	ENST00000570823	ENST00000575637		TCGA	LD	LUSC	TCGA-60-2719-01A	PELP1	chr17	4579652	-	CHRNE	chr17	4806058	-
Frame-shit	ENST00000431666	ENST00000446034		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
Frame-shit	ENST00000431666	ENST00000432826		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
In-frame	ENST00000338624	ENST00000446034		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
In-frame	ENST00000338624	ENST00000432826		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
In-frame	ENST00000245615	ENST00000446034		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
In-frame	ENST00000245615	ENST00000432826		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000391754	ENST00000446034		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000391754	ENST00000432826		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000474910	ENST00000446034		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000474910	ENST00000432826		TCGA	LD	LUSC	TCGA-60-2721-01A	MBOAT7	chr19	54682482	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000334351	ENST00000455895		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000334351	ENST00000413080		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000334351	ENST00000341071		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000334351	ENST00000526031		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000334351	ENST00000419121		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000334351	ENST00000446293		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-intron	ENST00000334351	ENST00000463967		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-intron	ENST00000334351	ENST00000449308		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000374468	ENST00000455895		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000374468	ENST00000413080		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000374468	ENST00000341071		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000374468	ENST00000526031		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000374468	ENST00000419121		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000374468	ENST00000446293		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-intron	ENST00000374468	ENST00000463967		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-intron	ENST00000374468	ENST00000449308		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
Frame-shit	ENST00000579103	ENST00000455895		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
Frame-shit	ENST00000579103	ENST00000413080		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
Frame-shit	ENST00000579103	ENST00000341071		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
Frame-shit	ENST00000579103	ENST00000526031		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
Frame-shit	ENST00000579103	ENST00000419121		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
Frame-shit	ENST00000579103	ENST00000446293		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5CDS-intron	ENST00000579103	ENST00000463967		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5CDS-intron	ENST00000579103	ENST00000449308		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-3CDS	ENST00000400776	ENST00000455895		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-3CDS	ENST00000400776	ENST00000413080		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-3CDS	ENST00000400776	ENST00000341071		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-3CDS	ENST00000400776	ENST00000526031		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-3CDS	ENST00000400776	ENST00000419121		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-3CDS	ENST00000400776	ENST00000446293		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-intron	ENST00000400776	ENST00000463967		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
intron-intron	ENST00000400776	ENST00000449308		TCGA	LD	LUSC	TCGA-60-2721-01A	PNRC2	chr1	24287624	+	BSDC1	chr1	32842342	-
5UTR-3CDS	ENST00000320033	ENST00000457167		TCGA	LD	LUSC	TCGA-60-2722-01A	ARL4D	chr17	41476461	+	DNAJC7	chr17	40135654	-
5UTR-3CDS	ENST00000320033	ENST00000426588		TCGA	LD	LUSC	TCGA-60-2722-01A	ARL4D	chr17	41476461	+	DNAJC7	chr17	40135654	-
5UTR-3CDS	ENST00000320033	ENST00000316603		TCGA	LD	LUSC	TCGA-60-2722-01A	ARL4D	chr17	41476461	+	DNAJC7	chr17	40135654	-
5UTR-intron	ENST00000320033	ENST00000589547		TCGA	LD	LUSC	TCGA-60-2722-01A	ARL4D	chr17	41476461	+	DNAJC7	chr17	40135654	-
In-frame	ENST00000439174	ENST00000297641		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
In-frame	ENST00000439174	ENST00000380701		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
5CDS-intron	ENST00000439174	ENST00000535968		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
5CDS-intron	ENST00000439174	ENST00000486641		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
Frame-shit	ENST00000541118	ENST00000297641		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
Frame-shit	ENST00000541118	ENST00000380701		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
5CDS-intron	ENST00000541118	ENST00000535968		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
5CDS-intron	ENST00000541118	ENST00000486641		TCGA	LD	LUSC	TCGA-60-2722-01A	GNA13	chr17	63049620	-	CCDC171	chr9	15846700	+
5UTR-3CDS	ENST00000579662	ENST00000331427		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000579662	ENST00000580223		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000339591	ENST00000331427		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000339591	ENST00000580223		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000200181	ENST00000331427		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000200181	ENST00000580223		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000450894	ENST00000331427		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5UTR-3CDS	ENST00000450894	ENST00000580223		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000449880	ENST00000331427		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000449880	ENST00000580223		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000584558	ENST00000331427		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
intron-3CDS	ENST00000584558	ENST00000580223		TCGA	LD	LUSC	TCGA-60-2722-01A	ITGB4	chr17	73717643	+	OTOP2	chr17	72926374	+
5CDS-5UTR	ENST00000228705	ENST00000393330		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000228705	ENST00000247829		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000228705	ENST00000546561		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000228705	ENST00000552128		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000228705	ENST00000552786		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000551214	ENST00000393330		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000551214	ENST00000247829		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000551214	ENST00000546561		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000551214	ENST00000552128		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000551214	ENST00000552786		TCGA	LD	LUSC	TCGA-60-2723-01A	PPM1H	chr12	63328272	-	TSPAN8	chr12	71835367	-
intron-3CDS	ENST00000404535	ENST00000488476		TCGA	LD	LUSC	TCGA-60-2723-01A	THTPA	chr14	24025679	+	IGHJ5	chr14	106330070	-
5UTR-3CDS	ENST00000288014	ENST00000488476		TCGA	LD	LUSC	TCGA-60-2723-01A	THTPA	chr14	24025679	+	IGHJ5	chr14	106330070	-
intron-3CDS	ENST00000556015	ENST00000488476		TCGA	LD	LUSC	TCGA-60-2723-01A	THTPA	chr14	24025679	+	IGHJ5	chr14	106330070	-
intron-3CDS	ENST00000554970	ENST00000488476		TCGA	LD	LUSC	TCGA-60-2723-01A	THTPA	chr14	24025679	+	IGHJ5	chr14	106330070	-
5UTR-3CDS	ENST00000554789	ENST00000488476		TCGA	LD	LUSC	TCGA-60-2723-01A	THTPA	chr14	24025679	+	IGHJ5	chr14	106330070	-
intron-3CDS	ENST00000419821	ENST00000359236		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-5UTR	ENST00000419821	ENST00000536905		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
5UTR-3CDS	ENST00000392533	ENST00000359236		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
5UTR-5UTR	ENST00000392533	ENST00000536905		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-3CDS	ENST00000537952	ENST00000359236		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-5UTR	ENST00000537952	ENST00000536905		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-3CDS	ENST00000543709	ENST00000359236		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-5UTR	ENST00000543709	ENST00000536905		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-3CDS	ENST00000536979	ENST00000359236		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
intron-5UTR	ENST00000536979	ENST00000536905		TCGA	LD	LUSC	TCGA-60-2724-01A	TAOK3	chr12	118810453	-	VSIG10	chr12	118520234	-
3UTR-3UTR	ENST00000328089	ENST00000430524		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
3UTR-3UTR	ENST00000328089	ENST00000402752		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
3UTR-3UTR	ENST00000328089	ENST00000331821		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
3UTR-intron	ENST00000328089	ENST00000467920		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-3UTR	ENST00000357898	ENST00000430524		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-3UTR	ENST00000357898	ENST00000402752		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-3UTR	ENST00000357898	ENST00000331821		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-intron	ENST00000357898	ENST00000467920		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-3UTR	ENST00000377399	ENST00000430524		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-3UTR	ENST00000377399	ENST00000402752		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-3UTR	ENST00000377399	ENST00000331821		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
intron-intron	ENST00000377399	ENST00000467920		TCGA	LD	LUSC	TCGA-63-5131-01A	SPSB1	chr1	9428255	+	RANBP1	chr22	20114679	+
5CDS-intron	ENST00000330029	ENST00000477496		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000460856		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000240874		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000360013		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000393496		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000291478		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000428018		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000459915		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000330029	ENST00000462213		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000477496		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000460856		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000240874		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000360013		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000393496		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000291478		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000428018		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000459915		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
5CDS-intron	ENST00000401406	ENST00000462213		TCGA	LD	LUSC	TCGA-63-5131-01A	UQCR10	chr22	30163537	+	KALRN	chr3	124132317	+
intron-3UTR	ENST00000377560	ENST00000419234		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000377560	ENST00000539060		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000377560	ENST00000327551		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-3UTR	ENST00000430131	ENST00000419234		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000430131	ENST00000539060		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000430131	ENST00000327551		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-3UTR	ENST00000550722	ENST00000419234		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000550722	ENST00000539060		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000550722	ENST00000327551		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-3UTR	ENST00000549141	ENST00000419234		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000549141	ENST00000539060		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
intron-intron	ENST00000549141	ENST00000327551		TCGA	LD	LUSC	TCGA-63-6202-01A	HECTD4	chr12	112600087	-	BRAP	chr12	112080496	-
5UTR-3CDS	ENST00000404138	ENST00000450454		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-intron	ENST00000404138	ENST00000374601		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-intron	ENST00000404138	ENST00000461794		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-3CDS	ENST00000375647	ENST00000450454		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-intron	ENST00000375647	ENST00000374601		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-intron	ENST00000375647	ENST00000461794		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-3CDS	ENST00000374651	ENST00000450454		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-intron	ENST00000374651	ENST00000374601		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
5UTR-intron	ENST00000374651	ENST00000461794		TCGA	LD	LUSC	TCGA-63-6202-01A	ZBTB40	chr1	22778497	+	TCEA3	chr1	23724448	-
Frame-shit	ENST00000371547	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
Frame-shit	ENST00000371547	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
5CDS-intron	ENST00000371547	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
Frame-shit	ENST00000371552	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
Frame-shit	ENST00000371552	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
5CDS-intron	ENST00000371552	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000371543	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000371543	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-intron	ENST00000371543	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000443748	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000443748	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-intron	ENST00000443748	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000260762	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000260762	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-intron	ENST00000260762	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000497262	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-3CDS	ENST00000497262	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
intron-intron	ENST00000497262	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	EXOC6	chr10	94594581	+	FFAR4	chr10	95346977	+
Frame-shit	ENST00000260731	ENST00000371483		TCGA	LD	LUSC	TCGA-63-7021-01A	KIF11	chr10	94399657	+	FFAR4	chr10	95346977	+
Frame-shit	ENST00000260731	ENST00000371481		TCGA	LD	LUSC	TCGA-63-7021-01A	KIF11	chr10	94399657	+	FFAR4	chr10	95346977	+
5CDS-intron	ENST00000260731	ENST00000604414		TCGA	LD	LUSC	TCGA-63-7021-01A	KIF11	chr10	94399657	+	FFAR4	chr10	95346977	+
5CDS-5UTR	ENST00000584307	ENST00000319888		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000584307	ENST00000574538		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000314574	ENST00000319888		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000314574	ENST00000574538		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
intron-5UTR	ENST00000577611	ENST00000319888		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
intron-5UTR	ENST00000577611	ENST00000574538		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000577961	ENST00000319888		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000577961	ENST00000574538		TCGA	LD	LUSC	TCGA-63-7021-01A	YES1	chr18	751705	-	METTL4	chr18	2567653	-
intron-3CDS	ENST00000398907	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000398907	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000398907	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-3CDS	ENST00000398905	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000398905	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000398905	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-3CDS	ENST00000288319	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000288319	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000288319	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5UTR-3CDS	ENST00000398897	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5UTR-5UTR	ENST00000398897	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5UTR-5UTR	ENST00000398897	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
Frame-shit	ENST00000398911	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000398911	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000398911	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
Frame-shit	ENST00000398910	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000398910	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000398910	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
Frame-shit	ENST00000417133	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000417133	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000417133	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
Frame-shit	ENST00000442448	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000442448	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000442448	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-3CDS	ENST00000453032	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000453032	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000453032	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
Frame-shit	ENST00000398919	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000398919	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5CDS-5UTR	ENST00000398919	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-3CDS	ENST00000429727	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000429727	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
intron-5UTR	ENST00000429727	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5UTR-3CDS	ENST00000485493	ENST00000330651		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5UTR-5UTR	ENST00000485493	ENST00000449719		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
5UTR-5UTR	ENST00000485493	ENST00000495277		TCGA	LD	LUSC	TCGA-63-7022-01A	ERG	chr21	39947586	-	MAPK11	chr22	50706378	-
In-frame	ENST00000366898	ENST00000443314		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366898	ENST00000441020		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366898	ENST00000450366		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366898	ENST00000233714		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366898	ENST00000431941		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366897	ENST00000443314		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366897	ENST00000441020		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366897	ENST00000450366		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366897	ENST00000233714		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366897	ENST00000431941		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366896	ENST00000443314		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366896	ENST00000441020		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366896	ENST00000450366		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366896	ENST00000233714		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366896	ENST00000431941		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000366894	ENST00000443314		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000366894	ENST00000441020		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000366894	ENST00000450366		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000366894	ENST00000233714		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000366894	ENST00000431941		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000338468	ENST00000443314		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000338468	ENST00000441020		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000338468	ENST00000450366		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000338468	ENST00000233714		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5UTR-3CDS	ENST00000338468	ENST00000431941		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366892	ENST00000443314		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366892	ENST00000441020		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366892	ENST00000450366		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366892	ENST00000233714		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
In-frame	ENST00000366892	ENST00000431941		TCGA	LD	LUSC	TCGA-63-7023-01A	PARK2	chr6	163148694	-	LANCL1	chr2	211336800	-
5CDS-5UTR	ENST00000540367	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000540367	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000540367	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000376618	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000376618	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000376618	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000265641	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000265641	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000265641	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000539743	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000539743	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000539743	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000537756	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000537756	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000537756	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000538994	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000538994	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000538994	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CPT1A	chr11	68549239	-	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000346329	ENST00000441623		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000346329	ENST00000309099		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000346329	ENST00000320913		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000301843	ENST00000441623		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000301843	ENST00000309099		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000301843	ENST00000320913		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
3UTR-5UTR	ENST00000527622	ENST00000441623		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
3UTR-5UTR	ENST00000527622	ENST00000309099		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
3UTR-5UTR	ENST00000527622	ENST00000320913		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000376561	ENST00000441623		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000376561	ENST00000309099		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000376561	ENST00000320913		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
intron-5UTR	ENST00000538675	ENST00000441623		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
intron-5UTR	ENST00000538675	ENST00000309099		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
intron-5UTR	ENST00000538675	ENST00000320913		TCGA	LD	LUSC	TCGA-63-A5M9-01A	CTTN	chr11	70256066	+	MRGPRF	chr11	68777425	-
5CDS-5UTR	ENST00000294309	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000294309	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000294309	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000542467	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000542467	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000542467	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000442692	ENST00000450904		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000442692	ENST00000362034		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
intron-5UTR	ENST00000442692	ENST00000567045		TCGA	LD	LUSC	TCGA-63-A5M9-01A	TPCN2	chr11	68840469	+	MRPL21	chr11	68668073	-
In-frame	ENST00000262962	ENST00000600132		TCGA	LD	LUSC	TCGA-63-A5MB-01A	CCDC94	chr19	4262111	+	ANKRD24	chr19	4212472	+
In-frame	ENST00000262962	ENST00000318934		TCGA	LD	LUSC	TCGA-63-A5MB-01A	CCDC94	chr19	4262111	+	ANKRD24	chr19	4212472	+
In-frame	ENST00000262962	ENST00000262970		TCGA	LD	LUSC	TCGA-63-A5MB-01A	CCDC94	chr19	4262111	+	ANKRD24	chr19	4212472	+
5CDS-3UTR	ENST00000262962	ENST00000595096		TCGA	LD	LUSC	TCGA-63-A5MB-01A	CCDC94	chr19	4262111	+	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000398958	ENST00000264377		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000398958	ENST00000374416		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000398958	ENST00000374415		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373833	ENST00000264377		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373833	ENST00000374416		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373833	ENST00000374415		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373832	ENST00000264377		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373832	ENST00000374416		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373832	ENST00000374415		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373831	ENST00000264377		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373831	ENST00000374416		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000373831	ENST00000374415		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000429051	ENST00000264377		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000429051	ENST00000374416		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000429051	ENST00000374415		TCGA	LD	LUSC	TCGA-63-A5MB-01A	RCC1	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000364938	ENST00000264377		TCGA	LD	LUSC	TCGA-63-A5MB-01A	SNHG3	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000364938	ENST00000374416		TCGA	LD	LUSC	TCGA-63-A5MB-01A	SNHG3	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000364938	ENST00000374415		TCGA	LD	LUSC	TCGA-63-A5MB-01A	SNHG3	chr1	28836616	+	ADAM23	chr2	207437845	+
intron-3CDS	ENST00000454859	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454859	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454859	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454859	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000454859	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000474289	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000474289	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000474289	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000474289	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000474289	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000528402	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000528402	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000528402	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000528402	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000528402	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454591	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454591	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454591	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000454591	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000454591	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368291	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368291	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368291	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368291	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000368291	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000309620	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000309620	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000309620	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000309620	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000309620	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000430841	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000430841	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000430841	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000430841	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000430841	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368289	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368289	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368289	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000368289	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000368289	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000531967	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000531967	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000531967	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000531967	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000531967	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000488087	ENST00000369981		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000488087	ENST00000369985		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000488087	ENST00000369977		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-3CDS	ENST00000488087	ENST00000369975		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-intron	ENST00000488087	ENST00000462633		TCGA	LD	LUSC	TCGA-63-A5MH-01A	ECHDC1	chr6	127652055	-	MYO6	chr6	76599775	+
intron-5UTR	ENST00000230882	ENST00000337836		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000230882	ENST00000263413		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-intron	ENST00000230882	ENST00000475349		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000357703	ENST00000337836		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000357703	ENST00000263413		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-intron	ENST00000357703	ENST00000475349		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000537449	ENST00000337836		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000537449	ENST00000263413		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-intron	ENST00000537449	ENST00000475349		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000513625	ENST00000337836		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-5UTR	ENST00000513625	ENST00000263413		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
intron-intron	ENST00000513625	ENST00000475349		TCGA	LD	LUSC	TCGA-63-A5MI-01A	GHR	chr5	42424700	+	C6	chr5	41203352	-
In-frame	ENST00000293860	ENST00000334976		TCGA	LD	LUSC	TCGA-63-A5MI-01A	POLR3K	chr16	103476	-	EMC10	chr19	50981186	+
In-frame	ENST00000293860	ENST00000376918		TCGA	LD	LUSC	TCGA-63-A5MI-01A	POLR3K	chr16	103476	-	EMC10	chr19	50981186	+
In-frame	ENST00000293860	ENST00000598585		TCGA	LD	LUSC	TCGA-63-A5MI-01A	POLR3K	chr16	103476	-	EMC10	chr19	50981186	+
In-frame	ENST00000372902	ENST00000262839		TCGA	LD	LUSC	TCGA-63-A5MI-01A	TIMM8A	chrX	100603521	-	TRPC5	chrX	111025366	-
5UTR-3CDS	ENST00000480575	ENST00000262839		TCGA	LD	LUSC	TCGA-63-A5MI-01A	TIMM8A	chrX	100603521	-	TRPC5	chrX	111025366	-
intron-intron	ENST00000408388	ENST00000297313		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	PVT1	chr8	128806980	+	RGS20	chr8	54826057	+
intron-intron	ENST00000408388	ENST00000344277		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	PVT1	chr8	128806980	+	RGS20	chr8	54826057	+
intron-intron	ENST00000408388	ENST00000522225		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	PVT1	chr8	128806980	+	RGS20	chr8	54826057	+
intron-intron	ENST00000408388	ENST00000276500		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	PVT1	chr8	128806980	+	RGS20	chr8	54826057	+
intron-intron	ENST00000408388	ENST00000517405		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	PVT1	chr8	128806980	+	RGS20	chr8	54826057	+
5UTR-5UTR	ENST00000286827	ENST00000355117		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000286827	ENST00000540841		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000286827	ENST00000540178		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000286827	ENST00000360409		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000286827	ENST00000417189		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-intron	ENST00000286827	ENST00000357118		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-intron	ENST00000286827	ENST00000357785		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-intron	ENST00000286827	ENST00000272849		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-intron	ENST00000286827	ENST00000412873		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
5UTR-intron	ENST00000286827	ENST00000485684		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000541036	ENST00000355117		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000541036	ENST00000540841		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000541036	ENST00000540178		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000541036	ENST00000360409		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000541036	ENST00000417189		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000541036	ENST00000357118		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000541036	ENST00000357785		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000541036	ENST00000272849		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000541036	ENST00000412873		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000541036	ENST00000485684		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000469412	ENST00000355117		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000469412	ENST00000540841		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000469412	ENST00000540178		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000469412	ENST00000360409		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-5UTR	ENST00000469412	ENST00000417189		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000469412	ENST00000357118		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000469412	ENST00000357785		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000469412	ENST00000272849		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000469412	ENST00000412873		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-intron	ENST00000469412	ENST00000485684		TCGA	LD	LUSC	TCGA-63-A5MJ-01A	TIAM1	chr21	32931240	-	NRP2	chr2	206547815	+
intron-3CDS	ENST00000542754	ENST00000439727		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000542754	ENST00000439348		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000542754	ENST00000389961		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000542754	ENST00000543095		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000542754	ENST00000404677		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000542754	ENST00000382464		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000313566	ENST00000439727		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000313566	ENST00000439348		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000313566	ENST00000389961		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000313566	ENST00000543095		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000313566	ENST00000404677		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000313566	ENST00000382464		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000216366	ENST00000439727		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000216366	ENST00000439348		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000216366	ENST00000389961		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000216366	ENST00000543095		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
5CDS-intron	ENST00000216366	ENST00000404677		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
5CDS-intron	ENST00000216366	ENST00000382464		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000334725	ENST00000439727		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000334725	ENST00000439348		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000334725	ENST00000389961		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
Frame-shit	ENST00000334725	ENST00000543095		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
5CDS-intron	ENST00000334725	ENST00000404677		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
5CDS-intron	ENST00000334725	ENST00000382464		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554609	ENST00000439727		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554609	ENST00000439348		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554609	ENST00000389961		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554609	ENST00000543095		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000554609	ENST00000404677		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000554609	ENST00000382464		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554345	ENST00000439727		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554345	ENST00000439348		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554345	ENST00000389961		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-3CDS	ENST00000554345	ENST00000543095		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000554345	ENST00000404677		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-intron	ENST00000554345	ENST00000382464		TCGA	LD	LUSC	TCGA-63-A5ML-01A	AP4S1	chr14	31549850	+	HEATR5A	chr14	31778388	-
intron-5UTR	ENST00000327921	ENST00000538205		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-5UTR	ENST00000327921	ENST00000256412		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-intron	ENST00000327921	ENST00000522298		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-intron	ENST00000327921	ENST00000519953		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-5UTR	ENST00000262233	ENST00000538205		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-5UTR	ENST00000262233	ENST00000256412		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-intron	ENST00000262233	ENST00000522298		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-intron	ENST00000262233	ENST00000519953		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-5UTR	ENST00000334192	ENST00000538205		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-5UTR	ENST00000334192	ENST00000256412		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-intron	ENST00000334192	ENST00000522298		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
5CDS-intron	ENST00000334192	ENST00000519953		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-5UTR	ENST00000556758	ENST00000538205		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-5UTR	ENST00000556758	ENST00000256412		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-intron	ENST00000556758	ENST00000522298		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-intron	ENST00000556758	ENST00000519953		TCGA	LD	LUSC	TCGA-63-A5ML-01A	EML1	chr14	100259880	+	ADAMDEC1	chr8	24241972	+
intron-intron	ENST00000321562	ENST00000540235		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3UTR	ENST00000321562	ENST00000393930		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3UTR	ENST00000321562	ENST00000393931		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3UTR	ENST00000321562	ENST00000310706		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-intron	ENST00000544340	ENST00000540235		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3UTR	ENST00000544340	ENST00000393930		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3UTR	ENST00000544340	ENST00000393931		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3UTR	ENST00000544340	ENST00000310706		TCGA	LD	LUSC	TCGA-63-A5ML-01A	FKBP10	chr17	39976966	+	JUP	chr17	39911115	-
intron-3CDS	ENST00000479399	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
intron-intron	ENST00000479399	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
intron-intron	ENST00000479399	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
In-frame	ENST00000341694	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000341694	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000341694	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
Frame-shit	ENST00000259632	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000259632	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000259632	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
Frame-shit	ENST00000378916	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000378916	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000378916	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
In-frame	ENST00000447983	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000447983	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000447983	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
Frame-shit	ENST00000477738	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000477738	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000477738	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
Frame-shit	ENST00000378913	ENST00000379992		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000378913	ENST00000493941		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000378913	ENST00000308675		TCGA	LD	LUSC	TCGA-63-A5MM-01A	DCTN3	chr9	34618673	-	LINGO2	chr9	28670278	-
In-frame	ENST00000380249	ENST00000380110		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000380249	ENST00000223951		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000380249	ENST00000544538		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000380249	ENST00000397312		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000380249	ENST00000380117		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-intron	ENST00000380249	ENST00000462649		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
In-frame	ENST00000338382	ENST00000380110		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000338382	ENST00000223951		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000338382	ENST00000544538		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000338382	ENST00000397312		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000338382	ENST00000380117		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-intron	ENST00000338382	ENST00000462649		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
In-frame	ENST00000605086	ENST00000380110		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000605086	ENST00000223951		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000605086	ENST00000544538		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000605086	ENST00000397312		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-5UTR	ENST00000605086	ENST00000380117		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
5CDS-intron	ENST00000605086	ENST00000462649		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
intron-3CDS	ENST00000604828	ENST00000380110		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000604828	ENST00000223951		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000604828	ENST00000544538		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000604828	ENST00000397312		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
intron-5UTR	ENST00000604828	ENST00000380117		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
intron-intron	ENST00000604828	ENST00000462649		TCGA	LD	LUSC	TCGA-63-A5MM-01A	FOCAD	chr9	20823114	+	ELAVL2	chr9	23762247	-
In-frame	ENST00000374759	ENST00000360295		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000374759	ENST00000317338		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000374759	ENST00000442608		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000374759	ENST00000335960		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000288439	ENST00000360295		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000288439	ENST00000317338		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000288439	ENST00000442608		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000288439	ENST00000335960		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000546352	ENST00000360295		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000546352	ENST00000317338		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000546352	ENST00000442608		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000546352	ENST00000335960		TCGA	LD	LUSC	TCGA-63-A5MN-01A	SLC38A10	chr17	79244718	-	SEZ6	chr17	27296970	-
In-frame	ENST00000264335	ENST00000226209		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
In-frame	ENST00000264335	ENST00000583535		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
5UTR-3CDS	ENST00000571732	ENST00000226209		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
5UTR-3CDS	ENST00000571732	ENST00000583535		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
In-frame	ENST00000573026	ENST00000226209		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
In-frame	ENST00000573026	ENST00000583535		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
In-frame	ENST00000575977	ENST00000226209		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
In-frame	ENST00000575977	ENST00000583535		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
5UTR-3CDS	ENST00000498643	ENST00000226209		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
5UTR-3CDS	ENST00000498643	ENST00000583535		TCGA	LD	LUSC	TCGA-63-A5MN-01A	YWHAE	chr17	1303341	-	MYH3	chr17	10533775	-
5CDS-5UTR	ENST00000544915	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000544915	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-5UTR	ENST00000395901	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000395901	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-5UTR	ENST00000546179	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000546179	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-5UTR	ENST00000311001	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000311001	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-5UTR	ENST00000261178	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000261178	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-5UTR	ENST00000266503	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5CDS-intron	ENST00000266503	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
intron-5UTR	ENST00000539558	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
intron-intron	ENST00000539558	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
intron-5UTR	ENST00000542388	ENST00000389032		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
intron-intron	ENST00000542388	ENST00000539577		TCGA	LD	LUSC	TCGA-63-A5MP-01A	ARNTL2	chr12	27486036	+	STK38L	chr12	27450643	+
5UTR-5UTR	ENST00000315677	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-3UTR	ENST00000315677	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000315677	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000315677	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000315677	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000315677	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000315677	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-5UTR	ENST00000581527	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-3UTR	ENST00000581527	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000581527	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000581527	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000581527	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000581527	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-intron	ENST00000581527	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000400147	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000400147	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400147	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400147	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400147	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400147	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400147	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000400149	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000400149	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400149	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400149	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400149	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400149	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400149	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000400155	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000400155	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400155	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400155	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400155	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400155	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400155	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000400150	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000400150	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400150	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400150	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400150	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400150	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400150	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000584874	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000584874	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000584874	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000584874	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000584874	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000584874	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000584874	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000534970	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000534970	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000534970	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000534970	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000534970	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000534970	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000534970	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000539435	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000539435	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000539435	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000539435	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000539435	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000539435	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000539435	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000581699	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000581699	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000581699	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000581699	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000581699	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000581699	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000581699	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000400145	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000400145	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400145	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400145	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400145	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400145	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000400145	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000515196	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000515196	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000515196	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000515196	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000515196	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000515196	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000515196	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-5UTR	ENST00000478161	ENST00000433346		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-3UTR	ENST00000478161	ENST00000449039		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000478161	ENST00000007969		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000478161	ENST00000323702		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000478161	ENST00000443597		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000478161	ENST00000436789		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
intron-intron	ENST00000478161	ENST00000429740		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	LRRC23	chr12	6992868	+
5UTR-3UTR	ENST00000315677	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
5UTR-3UTR	ENST00000581527	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000400147	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000400149	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000400155	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000400150	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000584874	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000534970	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000539435	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000581699	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000400145	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000515196	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-3UTR	ENST00000478161	ENST00000412023		TCGA	LD	LUSC	TCGA-63-A5MP-01A	DLGAP1	chr18	4455006	-	RPL13P5	chr12	6992868	+
intron-intron	ENST00000265245	ENST00000444495		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000265245	ENST00000273783		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000265245	ENST00000432569		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000265245	ENST00000498831		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000480853	ENST00000444495		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000480853	ENST00000273783		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000480853	ENST00000432569		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
intron-intron	ENST00000480853	ENST00000498831		TCGA	LD	LUSC	TCGA-63-A5MP-01A	LSG1	chr3	194371619	-	EIF2B5	chr3	183862672	+
Frame-shit	ENST00000399799	ENST00000350811		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
Frame-shit	ENST00000399799	ENST00000457475		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
Frame-shit	ENST00000399799	ENST00000395749		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000502837		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000440254		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000358707		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000353625		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000258682		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000347193		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000346990		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-5UTR	ENST00000399799	ENST00000395747		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
5CDS-intron	ENST00000399799	ENST00000489429		TCGA	LD	LUSC	TCGA-63-A5MT-01A	ROCK1	chr18	18619433	-	CAMK2B	chr7	44323824	-
Frame-shit	ENST00000326005	ENST00000300030		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-5UTR	ENST00000326005	ENST00000558779		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-3UTR	ENST00000326005	ENST00000380290		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-intron	ENST00000326005	ENST00000557835		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-intron	ENST00000326005	ENST00000559950		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
Frame-shit	ENST00000560258	ENST00000300030		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-5UTR	ENST00000560258	ENST00000558779		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-3UTR	ENST00000560258	ENST00000380290		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-intron	ENST00000560258	ENST00000557835		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-intron	ENST00000560258	ENST00000559950		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-3CDS	ENST00000559753	ENST00000300030		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-5UTR	ENST00000559753	ENST00000558779		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-3UTR	ENST00000559753	ENST00000380290		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-intron	ENST00000559753	ENST00000557835		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-intron	ENST00000559753	ENST00000559950		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-3CDS	ENST00000560837	ENST00000300030		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-5UTR	ENST00000560837	ENST00000558779		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-3UTR	ENST00000560837	ENST00000380290		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-intron	ENST00000560837	ENST00000557835		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5UTR-intron	ENST00000560837	ENST00000559950		TCGA	LD	LUSC	TCGA-63-A5MV-01A	OAZ2	chr15	64995228	-	FAM96A	chr15	64365227	-
5CDS-5UTR	ENST00000331373	ENST00000169298		TCGA	LD	LUSC	TCGA-63-A5MV-01A	POMK	chr8	42958973	+	ST6GAL1	chr3	186681573	+
5CDS-5UTR	ENST00000331373	ENST00000457772		TCGA	LD	LUSC	TCGA-63-A5MV-01A	POMK	chr8	42958973	+	ST6GAL1	chr3	186681573	+
5CDS-intron	ENST00000331373	ENST00000448044		TCGA	LD	LUSC	TCGA-63-A5MV-01A	POMK	chr8	42958973	+	ST6GAL1	chr3	186681573	+
5CDS-3UTR	ENST00000331373	ENST00000487031		TCGA	LD	LUSC	TCGA-63-A5MV-01A	POMK	chr8	42958973	+	ST6GAL1	chr3	186681573	+
5UTR-5UTR	ENST00000378308	ENST00000330252		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000378308	ENST00000395088		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000378308	ENST00000372763		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000378308	ENST00000372758		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000378308	ENST00000372757		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-intron	ENST00000378308	ENST00000472029		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000324545	ENST00000330252		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000324545	ENST00000395088		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000324545	ENST00000372763		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000324545	ENST00000372758		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-5UTR	ENST00000324545	ENST00000372757		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
5UTR-intron	ENST00000324545	ENST00000472029		TCGA	LD	LUSC	TCGA-63-A5MV-01A	USP9X	chrX	40945362	+	NXF2	chrX	101561988	+
In-frame	ENST00000495514	ENST00000264852		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
In-frame	ENST00000495514	ENST00000393830		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
5CDS-intron	ENST00000495514	ENST00000463226		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
In-frame	ENST00000273395	ENST00000264852		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
In-frame	ENST00000273395	ENST00000393830		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
5CDS-intron	ENST00000273395	ENST00000463226		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
In-frame	ENST00000355385	ENST00000264852		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
In-frame	ENST00000355385	ENST00000393830		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
5CDS-intron	ENST00000355385	ENST00000463226		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
intron-3CDS	ENST00000485230	ENST00000264852		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
intron-3CDS	ENST00000485230	ENST00000393830		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
intron-intron	ENST00000485230	ENST00000463226		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
intron-3CDS	ENST00000484034	ENST00000264852		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
intron-3CDS	ENST00000484034	ENST00000393830		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
intron-intron	ENST00000484034	ENST00000463226		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
3UTR-3CDS	ENST00000497495	ENST00000264852		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
3UTR-3CDS	ENST00000497495	ENST00000393830		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
3UTR-intron	ENST00000497495	ENST00000463226		TCGA	LD	LUSC	TCGA-63-A5MW-01A	BOC	chr3	112997630	+	SIDT1	chr3	113320435	+
3UTR-3UTR	ENST00000562678	ENST00000310358		TCGA	LD	LUSC	TCGA-63-A5MW-01A	DISC1FP1	chr11	90280063	+	SPON1	chr11	14004394	+
Frame-shit	ENST00000256383	ENST00000329153		TCGA	LD	LUSC	TCGA-63-A5MW-01A	EIF2S1	chr14	67843307	+	PLEKHH1	chr14	68026325	+
5CDS-intron	ENST00000256383	ENST00000417684		TCGA	LD	LUSC	TCGA-63-A5MW-01A	EIF2S1	chr14	67843307	+	PLEKHH1	chr14	68026325	+
5CDS-intron	ENST00000256383	ENST00000559832		TCGA	LD	LUSC	TCGA-63-A5MW-01A	EIF2S1	chr14	67843307	+	PLEKHH1	chr14	68026325	+
Frame-shit	ENST00000466499	ENST00000329153		TCGA	LD	LUSC	TCGA-63-A5MW-01A	EIF2S1	chr14	67843307	+	PLEKHH1	chr14	68026325	+
5CDS-intron	ENST00000466499	ENST00000417684		TCGA	LD	LUSC	TCGA-63-A5MW-01A	EIF2S1	chr14	67843307	+	PLEKHH1	chr14	68026325	+
5CDS-intron	ENST00000466499	ENST00000559832		TCGA	LD	LUSC	TCGA-63-A5MW-01A	EIF2S1	chr14	67843307	+	PLEKHH1	chr14	68026325	+
Frame-shit	ENST00000495893	ENST00000347300		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000495893	ENST00000296266		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000495893	ENST00000507564		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000495893	ENST00000431818		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000495893	ENST00000504021		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000495893	ENST00000349441		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000495893	ENST00000348417		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000495893	ENST00000440957		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-intron	ENST00000495893	ENST00000513932		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000494943	ENST00000347300		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000494943	ENST00000296266		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000494943	ENST00000507564		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000494943	ENST00000431818		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000494943	ENST00000504021		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000494943	ENST00000349441		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000494943	ENST00000348417		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000494943	ENST00000440957		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-intron	ENST00000494943	ENST00000513932		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000467570	ENST00000347300		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000467570	ENST00000296266		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
Frame-shit	ENST00000467570	ENST00000507564		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000467570	ENST00000431818		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000467570	ENST00000504021		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000467570	ENST00000349441		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000467570	ENST00000348417		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-5UTR	ENST00000467570	ENST00000440957		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-intron	ENST00000467570	ENST00000513932		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000474275	ENST00000347300		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000474275	ENST00000296266		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000474275	ENST00000507564		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000474275	ENST00000431818		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000474275	ENST00000504021		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000474275	ENST00000349441		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000474275	ENST00000348417		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000474275	ENST00000440957		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-intron	ENST00000474275	ENST00000513932		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000497658	ENST00000347300		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000497658	ENST00000296266		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000497658	ENST00000507564		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000497658	ENST00000431818		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000497658	ENST00000504021		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000497658	ENST00000349441		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000497658	ENST00000348417		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000497658	ENST00000440957		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-intron	ENST00000497658	ENST00000513932		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000481639	ENST00000347300		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000481639	ENST00000296266		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-3CDS	ENST00000481639	ENST00000507564		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000481639	ENST00000431818		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000481639	ENST00000504021		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000481639	ENST00000349441		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000481639	ENST00000348417		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-5UTR	ENST00000481639	ENST00000440957		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
intron-intron	ENST00000481639	ENST00000513932		TCGA	LD	LUSC	TCGA-63-A5MW-01A	PHC3	chr3	169863211	-	IFT122	chr3	129182403	+
5CDS-intron	ENST00000374723	ENST00000495708		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000374710		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000481272		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000484973		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000539376		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000394926		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000480279		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000374707		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374723	ENST00000374716		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000495708		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000374710		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000481272		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000484973		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000539376		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000394926		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000480279		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000374707		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374720	ENST00000374716		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000495708		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000374710		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000481272		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000484973		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000539376		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000394926		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000480279		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000374707		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5CDS-intron	ENST00000374724	ENST00000374716		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000495708		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000374710		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000481272		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000484973		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000539376		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000394926		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000480279		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000374707		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000343170	ENST00000374716		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000495708		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000374710		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000481272		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000484973		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000539376		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000394926		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000480279		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000374707		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
intron-intron	ENST00000607692	ENST00000374716		TCGA	LD	LUSC	TCGA-63-A5MW-01A	SLC44A1	chr9	108097980	+	FSD1L	chr9	108308639	+
5UTR-3CDS	ENST00000528105	ENST00000263360		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000528105	ENST00000528180		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000528105	ENST00000327320		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000528105	ENST00000351625		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-intron	ENST00000528105	ENST00000527888		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000304511	ENST00000263360		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000304511	ENST00000528180		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000304511	ENST00000327320		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000304511	ENST00000351625		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-intron	ENST00000304511	ENST00000527888		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000532180	ENST00000263360		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000532180	ENST00000528180		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000532180	ENST00000327320		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-3CDS	ENST00000532180	ENST00000351625		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
5UTR-intron	ENST00000532180	ENST00000527888		TCGA	LD	LUSC	TCGA-63-A5MW-01A	TMEM126A	chr11	85359133	+	EED	chr11	85961338	+
Frame-shit	ENST00000544604	ENST00000332050		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
Frame-shit	ENST00000544604	ENST00000397938		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
Frame-shit	ENST00000544604	ENST00000406548		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
Frame-shit	ENST00000544604	ENST00000331029		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
Frame-shit	ENST00000544604	ENST00000414183		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
Frame-shit	ENST00000544604	ENST00000333395		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
Frame-shit	ENST00000544604	ENST00000332035		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000332050		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000397938		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000406548		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000331029		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000414183		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000333395		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5UTR-3CDS	ENST00000332811	ENST00000332035		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000332050		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000397938		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000406548		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000331029		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000414183		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000333395		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000402174	ENST00000332035		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000332050		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000397938		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000406548		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000331029		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000414183		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000333395		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
intron-3CDS	ENST00000406323	ENST00000332035		TCGA	LD	LUSC	TCGA-63-A5MW-01A	ZNRF3	chr22	29280054	+	EWSR1	chr22	29674019	+
5CDS-5UTR	ENST00000216185	ENST00000216181		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5CDS-intron	ENST00000216185	ENST00000475726		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5CDS-5UTR	ENST00000216185	ENST00000401701		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-5UTR	ENST00000416967	ENST00000216181		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-intron	ENST00000416967	ENST00000475726		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-5UTR	ENST00000416967	ENST00000401701		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-5UTR	ENST00000487725	ENST00000216181		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-intron	ENST00000487725	ENST00000475726		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-5UTR	ENST00000487725	ENST00000401701		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5CDS-5UTR	ENST00000403313	ENST00000216181		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5CDS-intron	ENST00000403313	ENST00000475726		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5CDS-5UTR	ENST00000403313	ENST00000401701		TCGA	LD	LUSC	TCGA-63-A5MY-01A	TXN2	chr22	36876622	-	MYH9	chr22	36745300	-
5UTR-intron	ENST00000392259	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000392259	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000392266	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000392266	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000264274	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000264274	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000432109	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000432109	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000264275	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000264275	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000392258	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
5UTR-intron	ENST00000392258	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
3UTR-intron	ENST00000490682	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
3UTR-intron	ENST00000490682	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
intron-intron	ENST00000358485	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
intron-intron	ENST00000358485	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
intron-intron	ENST00000323492	ENST00000477524		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
intron-intron	ENST00000323492	ENST00000260505		TCGA	LD	LUSC	TCGA-66-2727-01A	CASP8	chr2	202098835	+	TTLL7	chr1	84335765	-
Frame-shit	ENST00000329517	ENST00000227266		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5CDS-intron	ENST00000329517	ENST00000524463		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5CDS-intron	ENST00000329517	ENST00000529974		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5CDS-intron	ENST00000329517	ENST00000393301		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
In-frame	ENST00000403325	ENST00000227266		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5CDS-intron	ENST00000403325	ENST00000524463		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5CDS-intron	ENST00000403325	ENST00000529974		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5CDS-intron	ENST00000403325	ENST00000393301		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
intron-3CDS	ENST00000405009	ENST00000227266		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
intron-intron	ENST00000405009	ENST00000524463		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
intron-intron	ENST00000405009	ENST00000529974		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
intron-intron	ENST00000405009	ENST00000393301		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5UTR-3CDS	ENST00000460402	ENST00000227266		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5UTR-intron	ENST00000460402	ENST00000524463		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5UTR-intron	ENST00000460402	ENST00000529974		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
5UTR-intron	ENST00000460402	ENST00000393301		TCGA	LD	LUSC	TCGA-66-2727-01A	GNB1L	chr22	19789524	-	CTSC	chr11	88033813	-
Frame-shit	ENST00000334256	ENST00000350721		TCGA	LD	LUSC	TCGA-66-2727-01A	KPNA4	chr3	160283002	-	ATR	chr3	142286996	-
Frame-shit	ENST00000334256	ENST00000383101		TCGA	LD	LUSC	TCGA-66-2727-01A	KPNA4	chr3	160283002	-	ATR	chr3	142286996	-
5UTR-3CDS	ENST00000469804	ENST00000350721		TCGA	LD	LUSC	TCGA-66-2727-01A	KPNA4	chr3	160283002	-	ATR	chr3	142286996	-
5UTR-3CDS	ENST00000469804	ENST00000383101		TCGA	LD	LUSC	TCGA-66-2727-01A	KPNA4	chr3	160283002	-	ATR	chr3	142286996	-
Frame-shit	ENST00000584667	ENST00000333213		TCGA	LD	LUSC	TCGA-66-2727-01A	SAP30BP	chr17	73667943	+	TSEN54	chr17	73512827	+
5CDS-3UTR	ENST00000584667	ENST00000580013		TCGA	LD	LUSC	TCGA-66-2727-01A	SAP30BP	chr17	73667943	+	TSEN54	chr17	73512827	+
intron-3CDS	ENST00000355423	ENST00000333213		TCGA	LD	LUSC	TCGA-66-2727-01A	SAP30BP	chr17	73667943	+	TSEN54	chr17	73512827	+
intron-3UTR	ENST00000355423	ENST00000580013		TCGA	LD	LUSC	TCGA-66-2727-01A	SAP30BP	chr17	73667943	+	TSEN54	chr17	73512827	+
3UTR-3CDS	ENST00000579864	ENST00000333213		TCGA	LD	LUSC	TCGA-66-2727-01A	SAP30BP	chr17	73667943	+	TSEN54	chr17	73512827	+
3UTR-3UTR	ENST00000579864	ENST00000580013		TCGA	LD	LUSC	TCGA-66-2727-01A	SAP30BP	chr17	73667943	+	TSEN54	chr17	73512827	+
Frame-shit	ENST00000273590	ENST00000309117		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000273590	ENST00000399000		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000273590	ENST00000288304		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
5CDS-5UTR	ENST00000273590	ENST00000539844		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000273590	ENST00000399001		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000273590	ENST00000476950		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
5CDS-intron	ENST00000273590	ENST00000398998		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-3CDS	ENST00000493381	ENST00000309117		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-5UTR	ENST00000493381	ENST00000399000		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-5UTR	ENST00000493381	ENST00000288304		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-5UTR	ENST00000493381	ENST00000539844		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-intron	ENST00000493381	ENST00000399001		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-intron	ENST00000493381	ENST00000476950		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
3UTR-intron	ENST00000493381	ENST00000398998		TCGA	LD	LUSC	TCGA-66-2727-01A	TCTA	chr3	49450073	+	DSCR3	chr21	38612940	-
intron-intron	ENST00000393934	ENST00000406091		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393934	ENST00000262231		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393934	ENST00000507740		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393934	ENST00000522174		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393934	ENST00000436393		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000393934	ENST00000339750		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
3UTR-intron	ENST00000477665	ENST00000406091		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
3UTR-intron	ENST00000477665	ENST00000262231		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
3UTR-intron	ENST00000477665	ENST00000507740		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
3UTR-intron	ENST00000477665	ENST00000522174		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
3UTR-intron	ENST00000477665	ENST00000436393		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
3UTR-intron	ENST00000477665	ENST00000339750		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000472215	ENST00000406091		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000472215	ENST00000262231		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000472215	ENST00000507740		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000472215	ENST00000522174		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000472215	ENST00000436393		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
intron-intron	ENST00000472215	ENST00000339750		TCGA	LD	LUSC	TCGA-66-2742-01A	PLCXD2	chr3	111451550	+	RIMS2	chr8	105160835	+
5CDS-5UTR	ENST00000256190	ENST00000526148		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
5CDS-5UTR	ENST00000256190	ENST00000525681		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
5CDS-5UTR	ENST00000256190	ENST00000339995		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
5CDS-5UTR	ENST00000256190	ENST00000396525		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
5CDS-intron	ENST00000256190	ENST00000525995		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
intron-5UTR	ENST00000527019	ENST00000526148		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
intron-5UTR	ENST00000527019	ENST00000525681		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
intron-5UTR	ENST00000527019	ENST00000339995		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
intron-5UTR	ENST00000527019	ENST00000396525		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
intron-intron	ENST00000527019	ENST00000525995		TCGA	LD	LUSC	TCGA-66-2744-01A	SBF2	chr11	10315562	-	EIF4G2	chr11	10828928	-
Frame-shit	ENST00000323959	ENST00000216281		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
In-frame	ENST00000323959	ENST00000334701		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5CDS-intron	ENST00000323959	ENST00000441629		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5CDS-intron	ENST00000323959	ENST00000558600		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
Frame-shit	ENST00000524827	ENST00000216281		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
In-frame	ENST00000524827	ENST00000334701		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5CDS-intron	ENST00000524827	ENST00000441629		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5CDS-intron	ENST00000524827	ENST00000558600		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5UTR-3CDS	ENST00000526480	ENST00000216281		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5UTR-3CDS	ENST00000526480	ENST00000334701		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5UTR-intron	ENST00000526480	ENST00000441629		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
5UTR-intron	ENST00000526480	ENST00000558600		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-3CDS	ENST00000438862	ENST00000216281		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-3CDS	ENST00000438862	ENST00000334701		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-intron	ENST00000438862	ENST00000441629		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-intron	ENST00000438862	ENST00000558600		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-3CDS	ENST00000431742	ENST00000216281		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-3CDS	ENST00000431742	ENST00000334701		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-intron	ENST00000431742	ENST00000441629		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-intron	ENST00000431742	ENST00000558600		TCGA	LD	LUSC	TCGA-66-2754-01A	CSTF3	chr11	33163213	-	HSP90AA1	chr14	102548158	-
intron-intron	ENST00000382582	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000382582	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000382582	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000382582	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000355994	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000355994	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000355994	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000355994	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397875	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397875	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397875	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397875	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397866	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397866	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397866	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397866	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397865	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397865	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397865	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397865	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000527041	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000527041	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000527041	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000527041	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000359645	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000359645	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000359645	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000359645	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000528160	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000528160	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000528160	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000528160	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397869	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397869	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397869	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000397869	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000354542	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000354542	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000354542	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000354542	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000526111	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000526111	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000526111	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000526111	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000580402	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000580402	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000580402	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000580402	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000579129	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000579129	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000579129	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000579129	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000578193	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000578193	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000578193	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
intron-intron	ENST00000578193	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397863	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397863	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397863	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397863	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397860	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397860	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397860	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5CDS-intron	ENST00000397860	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5UTR-intron	ENST00000487778	ENST00000541908		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5UTR-intron	ENST00000487778	ENST00000398864		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5UTR-intron	ENST00000487778	ENST00000266508		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
5UTR-intron	ENST00000487778	ENST00000360995		TCGA	LD	LUSC	TCGA-66-2754-01A	MBP	chr18	74778254	-	AEBP2	chr12	19705787	+
Frame-shit	ENST00000345365	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000345365	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000345365	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000345365	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000345365	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000345365	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000394589	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000394589	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000394589	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000394589	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000394589	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000394589	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000360276	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000360276	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000360276	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000360276	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000360276	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000360276	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000335858	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000335858	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000335858	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000335858	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000335858	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000335858	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000590016	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000590016	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000590016	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000590016	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000590016	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000590016	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000460118	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000460118	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000460118	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000460118	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000460118	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000460118	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5UTR-3CDS	ENST00000590380	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5UTR-3CDS	ENST00000590380	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5UTR-3CDS	ENST00000590380	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5UTR-3CDS	ENST00000590380	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5UTR-3CDS	ENST00000590380	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5UTR-intron	ENST00000590380	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000357906	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000357906	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000357906	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000357906	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000357906	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
intron-intron	ENST00000357906	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51D	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000593039	ENST00000506729		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51L3-RFFL	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000593039	ENST00000379807		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51L3-RFFL	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000593039	ENST00000389019		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51L3-RFFL	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000593039	ENST00000513675		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51L3-RFFL	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000593039	ENST00000379810		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51L3-RFFL	chr17	33433405	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000593039	ENST00000514551		TCGA	LD	LUSC	TCGA-66-2754-01A	RAD51L3-RFFL	chr17	33433405	-	SLCO6A1	chr5	101748847	-
Frame-shit	ENST00000607452	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000607452	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000607452	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000303536	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000303536	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000303536	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000394666	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000394666	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000394666	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000606865	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000606865	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000606865	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
3UTR-3CDS	ENST00000458030	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
3UTR-3CDS	ENST00000458030	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
3UTR-3CDS	ENST00000458030	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000422521	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000422521	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000422521	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000606082	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000606082	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000606082	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000406041	ENST00000358506		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000406041	ENST00000296122		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
intron-3CDS	ENST00000406041	ENST00000395366		TCGA	LD	LUSC	TCGA-66-2756-01A	ACYP2	chr2	54200947	+	PPP1CB	chr2	29004604	+
Frame-shit	ENST00000396212	ENST00000271732		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
In-frame	ENST00000396212	ENST00000540514		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000396212	ENST00000479757		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
Frame-shit	ENST00000381396	ENST00000271732		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
In-frame	ENST00000381396	ENST00000540514		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000381396	ENST00000479757		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000573412	ENST00000271732		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000573412	ENST00000540514		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000573412	ENST00000479757		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
Frame-shit	ENST00000396208	ENST00000271732		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
In-frame	ENST00000396208	ENST00000540514		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000396208	ENST00000479757		TCGA	LD	LUSC	TCGA-66-2756-01A	CCP110	chr16	19539344	+	GOLPH3L	chr1	150621224	-
In-frame	ENST00000389567	ENST00000296255		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
5CDS-5UTR	ENST00000389567	ENST00000497289		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
5CDS-intron	ENST00000389567	ENST00000490166		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
In-frame	ENST00000289135	ENST00000296255		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
5CDS-5UTR	ENST00000289135	ENST00000497289		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
5CDS-intron	ENST00000289135	ENST00000490166		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
intron-3CDS	ENST00000460133	ENST00000296255		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
intron-5UTR	ENST00000460133	ENST00000497289		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
intron-intron	ENST00000460133	ENST00000490166		TCGA	LD	LUSC	TCGA-66-2756-01A	ESYT3	chr3	138153967	+	RPN1	chr3	128363826	-
In-frame	ENST00000286091	ENST00000445224		TCGA	LD	LUSC	TCGA-66-2756-01A	PDIA4	chr7	148725413	-	SCHIP1	chr3	159583952	+
5CDS-intron	ENST00000286091	ENST00000483730		TCGA	LD	LUSC	TCGA-66-2756-01A	PDIA4	chr7	148725413	-	SCHIP1	chr3	159583952	+
5CDS-intron	ENST00000286091	ENST00000482804		TCGA	LD	LUSC	TCGA-66-2756-01A	PDIA4	chr7	148725413	-	SCHIP1	chr3	159583952	+
5CDS-5UTR	ENST00000397292	ENST00000455600		TCGA	LD	LUSC	TCGA-66-2756-01A	PLAA	chr9	26946895	-	RUSC2	chr9	35546427	+
5CDS-3UTR	ENST00000397292	ENST00000468041		TCGA	LD	LUSC	TCGA-66-2756-01A	PLAA	chr9	26946895	-	RUSC2	chr9	35546427	+
5CDS-5UTR	ENST00000520884	ENST00000455600		TCGA	LD	LUSC	TCGA-66-2756-01A	PLAA	chr9	26946895	-	RUSC2	chr9	35546427	+
5CDS-3UTR	ENST00000520884	ENST00000468041		TCGA	LD	LUSC	TCGA-66-2756-01A	PLAA	chr9	26946895	-	RUSC2	chr9	35546427	+
intron-5UTR	ENST00000520641	ENST00000455600		TCGA	LD	LUSC	TCGA-66-2756-01A	PLAA	chr9	26946895	-	RUSC2	chr9	35546427	+
intron-3UTR	ENST00000520641	ENST00000468041		TCGA	LD	LUSC	TCGA-66-2756-01A	PLAA	chr9	26946895	-	RUSC2	chr9	35546427	+
5UTR-3CDS	ENST00000361887	ENST00000441714		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
5UTR-3CDS	ENST00000361887	ENST00000345046		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
5UTR-3CDS	ENST00000361887	ENST00000458587		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
5UTR-intron	ENST00000361887	ENST00000468947		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000439251	ENST00000441714		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000439251	ENST00000345046		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000439251	ENST00000458587		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-intron	ENST00000439251	ENST00000468947		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000452693	ENST00000441714		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000452693	ENST00000345046		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000452693	ENST00000458587		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-intron	ENST00000452693	ENST00000468947		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000535214	ENST00000441714		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000535214	ENST00000345046		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-3CDS	ENST00000535214	ENST00000458587		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-intron	ENST00000535214	ENST00000468947		TCGA	LD	LUSC	TCGA-66-2756-01A	PNMA5	chrX	152160460	-	BCAP31	chrX	152966430	-
intron-intron	ENST00000519807	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000519807	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000519807	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000009589	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000009589	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000009589	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000524349	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000524349	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000524349	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000520490	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000520490	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000520490	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000520627	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000520627	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000520627	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000521262	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000521262	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000521262	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000523936	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000523936	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000523936	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000519606	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000519606	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000519606	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000518875	ENST00000519728		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000518875	ENST00000520220		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
intron-intron	ENST00000518875	ENST00000420292		TCGA	LD	LUSC	TCGA-66-2756-01A	RPS20	chr8	56985737	-	LYN	chr8	56926147	+
Frame-shit	ENST00000261778	ENST00000422142		TCGA	LD	LUSC	TCGA-66-2756-01A	TANGO6	chr16	69074324	+	CLEC2L	chr7	139221020	+
3UTR-3CDS	ENST00000561931	ENST00000422142		TCGA	LD	LUSC	TCGA-66-2756-01A	TANGO6	chr16	69074324	+	CLEC2L	chr7	139221020	+
Frame-shit	ENST00000373710	ENST00000344147		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000479629		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000373714		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000546109		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373710	ENST00000422613		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
Frame-shit	ENST00000536859	ENST00000344147		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000479629		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000373714		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000546109		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536859	ENST00000422613		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
Frame-shit	ENST00000373709	ENST00000344147		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000479629		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000373714		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000546109		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000373709	ENST00000422613		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
Frame-shit	ENST00000536384	ENST00000344147		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000479629		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000373714		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000546109		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000536384	ENST00000422613		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
3UTR-3CDS	ENST00000491976	ENST00000344147		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000479629		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000373714		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000546109		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
3UTR-intron	ENST00000491976	ENST00000422613		TCGA	LD	LUSC	TCGA-66-2758-01A	SERINC2	chr1	31902385	+	ZCCHC17	chr1	31836879	+
5CDS-intron	ENST00000358026	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000358026	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000358026	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000358026	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000358026	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000344626	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000344626	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000344626	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000344626	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000344626	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000429416	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000429416	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000429416	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000429416	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000429416	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000541122	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000541122	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000541122	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000541122	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000541122	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000589677	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000589677	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000589677	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000589677	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000589677	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000444061	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000444061	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000444061	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000444061	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000444061	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000590574	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000590574	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000590574	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000590574	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000590574	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000413806	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000413806	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000413806	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000413806	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000413806	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000450717	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000450717	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000450717	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000450717	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5CDS-intron	ENST00000450717	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
intron-intron	ENST00000538456	ENST00000446165		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
intron-intron	ENST00000538456	ENST00000343325		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
intron-intron	ENST00000538456	ENST00000458122		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
intron-intron	ENST00000538456	ENST00000540038		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
intron-intron	ENST00000538456	ENST00000498389		TCGA	LD	LUSC	TCGA-66-2758-01A	SMARCA4	chr19	11107220	+	ZNF791	chr19	12744405	+
5UTR-intron	ENST00000375859	ENST00000483933		TCGA	LD	LUSC	TCGA-66-2758-01A	SPIN1	chr9	91003453	+	FUT9	chr6	96561915	+
5UTR-5UTR	ENST00000375859	ENST00000302103		TCGA	LD	LUSC	TCGA-66-2758-01A	SPIN1	chr9	91003453	+	FUT9	chr6	96561915	+
5UTR-intron	ENST00000541629	ENST00000483933		TCGA	LD	LUSC	TCGA-66-2758-01A	SPIN1	chr9	91003453	+	FUT9	chr6	96561915	+
5UTR-5UTR	ENST00000541629	ENST00000302103		TCGA	LD	LUSC	TCGA-66-2758-01A	SPIN1	chr9	91003453	+	FUT9	chr6	96561915	+
3UTR-intron	ENST00000469017	ENST00000483933		TCGA	LD	LUSC	TCGA-66-2758-01A	SPIN1	chr9	91003453	+	FUT9	chr6	96561915	+
3UTR-5UTR	ENST00000469017	ENST00000302103		TCGA	LD	LUSC	TCGA-66-2758-01A	SPIN1	chr9	91003453	+	FUT9	chr6	96561915	+
intron-3CDS	ENST00000323523	ENST00000421999		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
intron-intron	ENST00000323523	ENST00000496116		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
intron-intron	ENST00000323523	ENST00000489081		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
Frame-shit	ENST00000403410	ENST00000421999		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000403410	ENST00000496116		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000403410	ENST00000489081		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
3UTR-3CDS	ENST00000462884	ENST00000421999		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
3UTR-intron	ENST00000462884	ENST00000496116		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
3UTR-intron	ENST00000462884	ENST00000489081		TCGA	LD	LUSC	TCGA-66-2758-01A	TMEM45A	chr3	100238452	+	CMSS1	chr3	99865817	+
3UTR-3CDS	ENST00000537532	ENST00000238146		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
3UTR-3CDS	ENST00000537532	ENST00000538744		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
3UTR-3UTR	ENST00000537532	ENST00000541259		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
3UTR-3UTR	ENST00000537532	ENST00000421670		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000539644	ENST00000238146		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000539644	ENST00000538744		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000539644	ENST00000541259		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000539644	ENST00000421670		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000392404	ENST00000238146		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000392404	ENST00000538744		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000392404	ENST00000541259		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000392404	ENST00000421670		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000538932	ENST00000238146		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000538932	ENST00000538744		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000538932	ENST00000541259		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000538932	ENST00000421670		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000337815	ENST00000238146		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3CDS	ENST00000337815	ENST00000538744		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000337815	ENST00000541259		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
5UTR-3UTR	ENST00000337815	ENST00000421670		TCGA	LD	LUSC	TCGA-66-2758-01A	ZNF664	chr12	124472685	+	DDX55	chr12	124103979	+
intron-3CDS	ENST00000470862	ENST00000298375		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
intron-3UTR	ENST00000470862	ENST00000525281		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
intron-3UTR	ENST00000470862	ENST00000532248		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
intron-3UTR	ENST00000470862	ENST00000334019		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
intron-3UTR	ENST00000470862	ENST00000345253		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
In-frame	ENST00000605149	ENST00000298375		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000605149	ENST00000525281		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000605149	ENST00000532248		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000605149	ENST00000334019		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000605149	ENST00000345253		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
In-frame	ENST00000439082	ENST00000298375		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000439082	ENST00000525281		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000439082	ENST00000532248		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000439082	ENST00000334019		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000439082	ENST00000345253		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
In-frame	ENST00000380554	ENST00000298375		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000380554	ENST00000525281		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000380554	ENST00000532248		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000380554	ENST00000334019		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
5CDS-3UTR	ENST00000380554	ENST00000345253		TCGA	LD	LUSC	TCGA-66-2759-01A	AKR1C3	chr10	5144842	+	AKR1E2	chr10	4877867	+
intron-3CDS	ENST00000319023	ENST00000398531		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000319023	ENST00000376536		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000539574	ENST00000398531		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000539574	ENST00000376536		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000530055	ENST00000398531		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000530055	ENST00000376536		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000526039	ENST00000398531		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000526039	ENST00000376536		TCGA	LD	LUSC	TCGA-66-2759-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
5CDS-5UTR	ENST00000400788	ENST00000607778		TCGA	LD	LUSC	TCGA-66-2759-01A	TMEM242	chr6	157739814	-	GTF2H5	chr6	158591502	+
intron-5UTR	ENST00000367144	ENST00000607778		TCGA	LD	LUSC	TCGA-66-2759-01A	TMEM242	chr6	157739814	-	GTF2H5	chr6	158591502	+
intron-3CDS	ENST00000341516	ENST00000557016		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000341516	ENST00000216520		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000341516	ENST00000555373		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-3CDS	ENST00000554215	ENST00000557016		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000554215	ENST00000216520		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000554215	ENST00000555373		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-3CDS	ENST00000556847	ENST00000557016		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000556847	ENST00000216520		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000556847	ENST00000555373		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-3CDS	ENST00000557386	ENST00000557016		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000557386	ENST00000216520		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000557386	ENST00000555373		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-3CDS	ENST00000389997	ENST00000557016		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000389997	ENST00000216520		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000389997	ENST00000555373		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-3CDS	ENST00000553293	ENST00000557016		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000553293	ENST00000216520		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000553293	ENST00000555373		TCGA	LD	LUSC	TCGA-66-2763-01A	DCAF5	chr14	69556665	-	ERH	chr14	69861629	-
intron-intron	ENST00000461361	ENST00000466084		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
intron-intron	ENST00000461361	ENST00000296127		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
intron-intron	ENST00000461361	ENST00000424952		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
intron-intron	ENST00000461361	ENST00000342790		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
5CDS-intron	ENST00000265564	ENST00000466084		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
5CDS-intron	ENST00000265564	ENST00000296127		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
5CDS-intron	ENST00000265564	ENST00000424952		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
5CDS-intron	ENST00000265564	ENST00000342790		TCGA	LD	LUSC	TCGA-66-2763-01A	EXOSC7	chr3	45017826	+	ZDHHC3	chr3	44975476	-
5UTR-3CDS	ENST00000308511	ENST00000369061		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000357555		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000358487		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000356226		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000369060		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000369059		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000346997		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000457416		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000351936		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000360144		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000369056		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000490349		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000359354		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000308511	ENST00000478859		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-3CDS	ENST00000521301	ENST00000369061		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000357555		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000358487		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000356226		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000369060		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000369059		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000346997		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000457416		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000351936		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000360144		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000369056		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000490349		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000359354		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
5UTR-intron	ENST00000521301	ENST00000478859		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000389279	ENST00000369061		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000357555		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000358487		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000356226		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000369060		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000369059		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000346997		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000457416		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000351936		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000360144		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000369056		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000490349		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000359354		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000389279	ENST00000478859		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-3CDS	ENST00000520861	ENST00000369061		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000357555		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000358487		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000356226		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000369060		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000369059		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000346997		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000457416		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000351936		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000360144		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000369056		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000490349		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000359354		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
intron-intron	ENST00000520861	ENST00000478859		TCGA	LD	LUSC	TCGA-66-2765-01A	CCAR2	chr8	22462355	+	FGFR2	chr10	123239535	-
In-frame	ENST00000369061	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000369061	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000369061	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000369061	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000357555	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000357555	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000357555	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000357555	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000358487	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000358487	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000358487	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000358487	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000356226	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000356226	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000356226	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000356226	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000369060	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000369060	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000369060	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000369060	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000369059	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000369059	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000369059	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000369059	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000346997	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000346997	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000346997	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000346997	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000457416	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000457416	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000457416	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000457416	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000351936	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000351936	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000351936	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000351936	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000360144	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000360144	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000360144	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000360144	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000369056	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000369056	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000369056	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000369056	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-3CDS	ENST00000490349	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-3CDS	ENST00000490349	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-3CDS	ENST00000490349	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-intron	ENST00000490349	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-3CDS	ENST00000359354	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-3CDS	ENST00000359354	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-3CDS	ENST00000359354	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
intron-intron	ENST00000359354	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000478859	ENST00000308511		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
In-frame	ENST00000478859	ENST00000521301		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
Frame-shit	ENST00000478859	ENST00000389279		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-intron	ENST00000478859	ENST00000520861		TCGA	LD	LUSC	TCGA-66-2765-01A	FGFR2	chr10	123243212	-	CCAR2	chr8	22464120	+
5CDS-3UTR	ENST00000395555	ENST00000361658		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000395555	ENST00000395544		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000395555	ENST00000580130		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-3UTR	ENST00000494157	ENST00000361658		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000494157	ENST00000395544		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000494157	ENST00000580130		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-3UTR	ENST00000225740	ENST00000361658		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000225740	ENST00000395544		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000225740	ENST00000580130		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-3UTR	ENST00000444455	ENST00000361658		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000444455	ENST00000395544		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000444455	ENST00000580130		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-3UTR	ENST00000457500	ENST00000361658		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000457500	ENST00000395544		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5CDS-intron	ENST00000457500	ENST00000580130		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
intron-3UTR	ENST00000485231	ENST00000361658		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
intron-intron	ENST00000485231	ENST00000395544		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
intron-intron	ENST00000485231	ENST00000580130		TCGA	LD	LUSC	TCGA-66-2766-01A	ALDH3A1	chr17	19642821	-	ULK2	chr17	19674380	-
5UTR-3CDS	ENST00000534862	ENST00000300415		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3UTR	ENST00000534862	ENST00000262659		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3CDS	ENST00000538448	ENST00000300415		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3UTR	ENST00000538448	ENST00000262659		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
Frame-shit	ENST00000375862	ENST00000300415		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5CDS-3UTR	ENST00000375862	ENST00000262659		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3CDS	ENST00000520553	ENST00000300415		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3UTR	ENST00000520553	ENST00000262659		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3CDS	ENST00000518730	ENST00000300415		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5UTR-3UTR	ENST00000518730	ENST00000262659		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
Frame-shit	ENST00000375852	ENST00000300415		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
5CDS-3UTR	ENST00000375852	ENST00000262659		TCGA	LD	LUSC	TCGA-66-2766-01A	HCK	chr20	30640289	+	CCM2L	chr20	30618804	+
Frame-shit	ENST00000575270	ENST00000219343		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000575270	ENST00000566454		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000349223	ENST00000219343		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000349223	ENST00000566454		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000329524	ENST00000219343		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000329524	ENST00000566454		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000346183	ENST00000219343		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000346183	ENST00000566454		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
3UTR-3CDS	ENST00000535127	ENST00000219343		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
3UTR-3CDS	ENST00000535127	ENST00000566454		TCGA	LD	LUSC	TCGA-66-2766-01A	NFATC3	chr16	68217269	+	SLC7A6	chr16	68328608	+
Frame-shit	ENST00000361972	ENST00000380448		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
5CDS-intron	ENST00000361972	ENST00000263126		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
Frame-shit	ENST00000397167	ENST00000380448		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
5CDS-intron	ENST00000397167	ENST00000263126		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
Frame-shit	ENST00000379713	ENST00000380448		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
5CDS-intron	ENST00000379713	ENST00000263126		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
In-frame	ENST00000379711	ENST00000380448		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
5CDS-intron	ENST00000379711	ENST00000263126		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
Frame-shit	ENST00000397160	ENST00000380448		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
5CDS-intron	ENST00000397160	ENST00000263126		TCGA	LD	LUSC	TCGA-66-2766-01A	SFMBT2	chr10	7409611	-	AKR1C4	chr10	5237428	+
In-frame	ENST00000419617	ENST00000354723		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
In-frame	ENST00000419617	ENST00000355544		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
In-frame	ENST00000419617	ENST00000395137		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
In-frame	ENST00000419617	ENST00000338971		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
In-frame	ENST00000419617	ENST00000395138		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
In-frame	ENST00000419617	ENST00000563322		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
Frame-shit	ENST00000523601	ENST00000354723		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
Frame-shit	ENST00000523601	ENST00000355544		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
Frame-shit	ENST00000523601	ENST00000395137		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
Frame-shit	ENST00000523601	ENST00000338971		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
Frame-shit	ENST00000523601	ENST00000395138		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
Frame-shit	ENST00000523601	ENST00000563322		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
intron-3CDS	ENST00000521768	ENST00000354723		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
intron-3CDS	ENST00000521768	ENST00000355544		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
intron-3CDS	ENST00000521768	ENST00000395137		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
intron-3CDS	ENST00000521768	ENST00000338971		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
intron-3CDS	ENST00000521768	ENST00000395138		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
intron-3CDS	ENST00000521768	ENST00000563322		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A3	chr16	30214011	+
In-frame	ENST00000419617	ENST00000344620		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
In-frame	ENST00000419617	ENST00000395400		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
In-frame	ENST00000419617	ENST00000360423		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
In-frame	ENST00000419617	ENST00000565290		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
Frame-shit	ENST00000523601	ENST00000344620		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
Frame-shit	ENST00000523601	ENST00000395400		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
Frame-shit	ENST00000523601	ENST00000360423		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
Frame-shit	ENST00000523601	ENST00000565290		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
intron-3CDS	ENST00000521768	ENST00000344620		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
intron-3CDS	ENST00000521768	ENST00000395400		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
intron-3CDS	ENST00000521768	ENST00000360423		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
intron-3CDS	ENST00000521768	ENST00000565290		TCGA	LD	LUSC	TCGA-66-2766-01A	STK3	chr8	99718695	-	SULT1A4	chr16	29474666	+
intron-3CDS	ENST00000382952	ENST00000390560		TCGA	LD	LUSC	TCGA-66-2767-01A	CTBP1	chr4	1229383	-	IGHJ6	chr14	106329456	-
intron-3CDS	ENST00000290921	ENST00000390560		TCGA	LD	LUSC	TCGA-66-2767-01A	CTBP1	chr4	1229383	-	IGHJ6	chr14	106329456	-
intron-3CDS	ENST00000510568	ENST00000390560		TCGA	LD	LUSC	TCGA-66-2767-01A	CTBP1	chr4	1229383	-	IGHJ6	chr14	106329456	-
intron-3CDS	ENST00000515690	ENST00000390560		TCGA	LD	LUSC	TCGA-66-2767-01A	CTBP1	chr4	1229383	-	IGHJ6	chr14	106329456	-
Frame-shit	ENST00000389054	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000389054	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000520569	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000520569	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000253811	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000253811	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000398566	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000398566	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000398562	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000398562	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000398557	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000398557	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000389057	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000389057	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
Frame-shit	ENST00000518047	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000518047	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000494967	ENST00000261811		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000494967	ENST00000509789		TCGA	LD	LUSC	TCGA-66-2768-01A	DIAPH1	chr5	140998365	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000346141	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000346141	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000346141	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000346141	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-intron	ENST00000346141	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000325752	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000325752	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000325752	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000325752	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000325752	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000340993	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000340993	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000340993	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000340993	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000340993	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000394239	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000394239	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000394239	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000394239	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000394239	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000592426	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000592426	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000592426	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000592426	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000592426	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000376094	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
In-frame	ENST00000376094	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000376094	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
Frame-shit	ENST00000376094	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5CDS-intron	ENST00000376094	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000539018	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000539018	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000539018	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-3CDS	ENST00000539018	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
intron-intron	ENST00000539018	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5UTR-3CDS	ENST00000591611	ENST00000393038		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5UTR-3CDS	ENST00000591611	ENST00000537860		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5UTR-3CDS	ENST00000591611	ENST00000409433		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5UTR-3CDS	ENST00000591611	ENST00000470557		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5UTR-intron	ENST00000591611	ENST00000579915		TCGA	LD	LUSC	TCGA-66-2768-01A	TUBD1	chr17	57963444	-	PTRH2	chr17	57775339	-
5CDS-5UTR	ENST00000434074	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000434074	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000434074	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000434074	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000434074	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000434074	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000434074	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000434074	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000312040	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000312040	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000312040	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000312040	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000312040	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000312040	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000312040	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000312040	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000451945	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000451945	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000451945	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000451945	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000451945	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000451945	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000451945	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000451945	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000529655	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000529655	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000529655	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000529655	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000529655	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000529655	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000529655	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000529655	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000530500	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000530500	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000530500	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000530500	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000530500	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000530500	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000530500	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000530500	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000526508	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000526508	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000526508	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000526508	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000526508	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000526508	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000526508	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000526508	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000524625	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000524625	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000524625	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000524625	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000524625	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000524625	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000524625	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000524625	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000359513	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000359513	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000359513	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000359513	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000359513	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000359513	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000359513	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000359513	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000528494	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000528494	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000528494	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000528494	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000528494	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-5UTR	ENST00000528494	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000528494	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
5CDS-intron	ENST00000528494	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000526485	ENST00000298834		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000526485	ENST00000426438		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000526485	ENST00000314845		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000526485	ENST00000533727		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000526485	ENST00000534300		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-5UTR	ENST00000526485	ENST00000458649		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-intron	ENST00000526485	ENST00000528950		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
intron-intron	ENST00000526485	ENST00000529963		TCGA	LD	LUSC	TCGA-66-2771-01A	ATG13	chr11	46671867	+	AMBRA1	chr11	46570050	-
Frame-shit	ENST00000286371	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2771-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141499216	+
5UTR-3CDS	ENST00000539728	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2771-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141499216	+
5UTR-3CDS	ENST00000462082	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2771-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141499216	+
intron-3CDS	ENST00000484727	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2771-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141499216	+
intron-3CDS	ENST00000546079	ENST00000587331		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000546079	ENST00000405314		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000541297	ENST00000587331		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000541297	ENST00000405314		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000337392	ENST00000587331		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000337392	ENST00000405314		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000589158	ENST00000587331		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
intron-3CDS	ENST00000589158	ENST00000405314		TCGA	LD	LUSC	TCGA-66-2771-01A	CLPTM1	chr19	45467018	+	CEACAM16	chr19	45213768	+
5UTR-5UTR	ENST00000542938	ENST00000316097		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5UTR-intron	ENST00000542938	ENST00000414057		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5UTR-5UTR	ENST00000542938	ENST00000409472		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5CDS-5UTR	ENST00000455799	ENST00000316097		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5CDS-intron	ENST00000455799	ENST00000414057		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5CDS-5UTR	ENST00000455799	ENST00000409472		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5UTR-5UTR	ENST00000355738	ENST00000316097		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5UTR-intron	ENST00000355738	ENST00000414057		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5UTR-5UTR	ENST00000355738	ENST00000409472		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5CDS-5UTR	ENST00000439556	ENST00000316097		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5CDS-intron	ENST00000439556	ENST00000414057		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5CDS-5UTR	ENST00000439556	ENST00000409472		TCGA	LD	LUSC	TCGA-66-2773-01A	ZNF625	chr19	12267371	-	SCAMP4	chr19	1914978	+
5UTR-3CDS	ENST00000371224	ENST00000329399		TCGA	LD	LUSC	TCGA-66-2781-01A	ALDH18A1	chr10	97416354	-	PDLIM1	chr10	97031541	-
5UTR-intron	ENST00000371224	ENST00000477757		TCGA	LD	LUSC	TCGA-66-2781-01A	ALDH18A1	chr10	97416354	-	PDLIM1	chr10	97031541	-
5UTR-3CDS	ENST00000371221	ENST00000329399		TCGA	LD	LUSC	TCGA-66-2781-01A	ALDH18A1	chr10	97416354	-	PDLIM1	chr10	97031541	-
5UTR-intron	ENST00000371221	ENST00000477757		TCGA	LD	LUSC	TCGA-66-2781-01A	ALDH18A1	chr10	97416354	-	PDLIM1	chr10	97031541	-
intron-3CDS	ENST00000483788	ENST00000329399		TCGA	LD	LUSC	TCGA-66-2781-01A	ALDH18A1	chr10	97416354	-	PDLIM1	chr10	97031541	-
intron-intron	ENST00000483788	ENST00000477757		TCGA	LD	LUSC	TCGA-66-2781-01A	ALDH18A1	chr10	97416354	-	PDLIM1	chr10	97031541	-
5UTR-intron	ENST00000229239	ENST00000464611		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
5UTR-5UTR	ENST00000229239	ENST00000331789		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
5UTR-intron	ENST00000396856	ENST00000464611		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
5UTR-5UTR	ENST00000396856	ENST00000331789		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
5UTR-intron	ENST00000396861	ENST00000464611		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
5UTR-5UTR	ENST00000396861	ENST00000331789		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
intron-intron	ENST00000396859	ENST00000464611		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
intron-5UTR	ENST00000396859	ENST00000331789		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
intron-intron	ENST00000396858	ENST00000464611		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
intron-5UTR	ENST00000396858	ENST00000331789		TCGA	LD	LUSC	TCGA-66-2783-01A	GAPDH	chr12	6643735	+	ACTB	chr7	5569294	-
Frame-shit	ENST00000362042	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
Frame-shit	ENST00000585291	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
Frame-shit	ENST00000357480	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
Frame-shit	ENST00000361665	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
intron-3CDS	ENST00000579481	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
intron-3CDS	ENST00000582155	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
intron-3CDS	ENST00000583378	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
intron-3CDS	ENST00000536222	ENST00000269025		TCGA	LD	LUSC	TCGA-66-2783-01A	NFE2L1	chr17	46128990	+	LRRC46	chr17	45911791	+
5CDS-intron	ENST00000423230	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000423230	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000398656	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000398656	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000534366	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000534366	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000528919	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000528919	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000326134	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
5CDS-intron	ENST00000326134	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000527071	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000527071	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000544576	ENST00000491186		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000544576	ENST00000325318		TCGA	LD	LUSC	TCGA-66-2785-01A	MROH1	chr8	145218751	+	TCTEX1D2	chr3	196043102	-
In-frame	ENST00000430710	ENST00000405508		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
In-frame	ENST00000430710	ENST00000262709		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
In-frame	ENST00000430710	ENST00000448790		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5CDS-3UTR	ENST00000430710	ENST00000494242		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000399982	ENST00000405508		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000399982	ENST00000262709		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000399982	ENST00000448790		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5CDS-3UTR	ENST00000399982	ENST00000494242		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000557364	ENST00000405508		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000557364	ENST00000262709		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000557364	ENST00000448790		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5CDS-3UTR	ENST00000557364	ENST00000494242		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5UTR-3CDS	ENST00000555962	ENST00000405508		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5UTR-3CDS	ENST00000555962	ENST00000262709		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5UTR-3CDS	ENST00000555962	ENST00000448790		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
5UTR-3UTR	ENST00000555962	ENST00000494242		TCGA	LD	LUSC	TCGA-66-2786-01A	CHD8	chr14	21867761	-	TOX4	chr14	21955610	+
Frame-shit	ENST00000313288	ENST00000481110		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
In-frame	ENST00000313288	ENST00000440486		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
In-frame	ENST00000313288	ENST00000412135		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
In-frame	ENST00000313288	ENST00000340107		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
In-frame	ENST00000313288	ENST00000260795		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
In-frame	ENST00000313288	ENST00000352904		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
5CDS-intron	ENST00000313288	ENST00000474521		TCGA	LD	LUSC	TCGA-66-2786-01A	TACC3	chr4	1741455	+	FGFR3	chr4	1808373	+
In-frame	ENST00000418917	ENST00000367042		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000418917	ENST00000354848		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000418917	ENST00000441839		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000418917	ENST00000322875		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000367041		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000358170		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000322918		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000361067		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000367047		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000357714		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-3UTR	ENST00000418917	ENST00000469535		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000360212		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000418917	ENST00000480003		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000490574	ENST00000367042		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000490574	ENST00000354848		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000490574	ENST00000441839		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000490574	ENST00000322875		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000367041		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000358170		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000322918		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000361067		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000367047		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000357714		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-3UTR	ENST00000490574	ENST00000469535		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000360212		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000490574	ENST00000480003		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000240851	ENST00000367042		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000240851	ENST00000354848		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000240851	ENST00000441839		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000240851	ENST00000322875		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000367041		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000358170		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000322918		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000361067		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000367047		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000357714		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-3UTR	ENST00000240851	ENST00000469535		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000360212		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000240851	ENST00000480003		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000476228	ENST00000367042		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000476228	ENST00000354848		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000476228	ENST00000441839		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
In-frame	ENST00000476228	ENST00000322875		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000367041		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000358170		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000322918		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000361067		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000367047		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000357714		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-3UTR	ENST00000476228	ENST00000469535		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000360212		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
5CDS-intron	ENST00000476228	ENST00000480003		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-3CDS	ENST00000481203	ENST00000367042		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-3CDS	ENST00000481203	ENST00000354848		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-3CDS	ENST00000481203	ENST00000441839		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-3CDS	ENST00000481203	ENST00000322875		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000367041		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000358170		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000322918		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000361067		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000367047		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000357714		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-3UTR	ENST00000481203	ENST00000469535		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000360212		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-intron	ENST00000481203	ENST00000480003		TCGA	LD	LUSC	TCGA-66-2787-01A	TFG	chr3	100447702	+	CD46	chr1	207941124	+
intron-3CDS	ENST00000460680	ENST00000463911		TCGA	LD	LUSC	TCGA-66-2788-01A	BAP1	chr3	52443953	-	IGHJ3	chr14	106330840	-
intron-3CDS	ENST00000296288	ENST00000463911		TCGA	LD	LUSC	TCGA-66-2788-01A	BAP1	chr3	52443953	-	IGHJ3	chr14	106330840	-
3UTR-intron	ENST00000521282	ENST00000519476		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
3UTR-intron	ENST00000521282	ENST00000297720		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
3UTR-intron	ENST00000521282	ENST00000524874		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
3UTR-intron	ENST00000521282	ENST00000379957		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
3UTR-intron	ENST00000521282	ENST00000523983		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
3UTR-intron	ENST00000521282	ENST00000527710		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
3UTR-intron	ENST00000521282	ENST00000528827		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000519476		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000297720		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000524874		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000379957		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000523983		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000527710		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-intron	ENST00000432471	ENST00000528827		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000519476		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000297720		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000524874		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000379957		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000523983		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000527710		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000287322	ENST00000528827		TCGA	LD	LUSC	TCGA-66-2789-01A	BAG4	chr8	38050313	+	LETM2	chr8	38257790	+
intron-3CDS	ENST00000360635	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
intron-intron	ENST00000360635	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-3CDS	ENST00000238091	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-intron	ENST00000238091	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-3CDS	ENST00000355346	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-intron	ENST00000355346	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-3CDS	ENST00000490426	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-intron	ENST00000490426	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
intron-3CDS	ENST00000359712	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
intron-intron	ENST00000359712	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-3CDS	ENST00000488451	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-intron	ENST00000488451	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-3CDS	ENST00000456913	ENST00000371817		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
5UTR-intron	ENST00000456913	ENST00000464187		TCGA	LD	LUSC	TCGA-66-2789-01A	ITGB1BP1	chr2	9563502	-	COL5A1	chr9	137658846	+
In-frame	ENST00000379226	ENST00000543067		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379226	ENST00000425654		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379226	ENST00000279451		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379226	ENST00000379510		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
5CDS-intron	ENST00000379226	ENST00000485012		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
intron-3CDS	ENST00000476598	ENST00000543067		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
intron-3CDS	ENST00000476598	ENST00000425654		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
intron-3CDS	ENST00000476598	ENST00000279451		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
intron-3CDS	ENST00000476598	ENST00000379510		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
intron-intron	ENST00000476598	ENST00000485012		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379220	ENST00000543067		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379220	ENST00000425654		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379220	ENST00000279451		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000379220	ENST00000379510		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
5CDS-intron	ENST00000379220	ENST00000485012		TCGA	LD	LUSC	TCGA-66-2790-01A	APOO	chrX	23897032	-	CNKSR2	chrX	21488884	+
In-frame	ENST00000370256	ENST00000360655		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370256	ENST00000396085		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370256	ENST00000349880		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370256	ENST00000396087		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370256	ENST00000527559		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370256	ENST00000540292		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000370256	ENST00000533917		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000370256	ENST00000311043		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000370256	ENST00000534229		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000260506	ENST00000360655		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000260506	ENST00000396085		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000260506	ENST00000349880		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000260506	ENST00000396087		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000260506	ENST00000527559		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000260506	ENST00000540292		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000260506	ENST00000533917		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000260506	ENST00000311043		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000260506	ENST00000534229		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000271234	ENST00000360655		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000271234	ENST00000396085		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000271234	ENST00000349880		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000271234	ENST00000396087		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000271234	ENST00000527559		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000271234	ENST00000540292		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000271234	ENST00000533917		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000271234	ENST00000311043		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000271234	ENST00000534229		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000604705	ENST00000360655		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000604705	ENST00000396085		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000604705	ENST00000349880		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000604705	ENST00000396087		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000604705	ENST00000527559		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000604705	ENST00000540292		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000604705	ENST00000533917		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000604705	ENST00000311043		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000604705	ENST00000534229		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370253	ENST00000360655		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370253	ENST00000396085		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370253	ENST00000349880		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370253	ENST00000396087		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370253	ENST00000527559		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
In-frame	ENST00000370253	ENST00000540292		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000370253	ENST00000533917		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-intron	ENST00000370253	ENST00000311043		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
5CDS-3UTR	ENST00000370253	ENST00000534229		TCGA	LD	LUSC	TCGA-66-2790-01A	FNBP1L	chr1	93989880	+	NAV2	chr11	19854030	+
intron-3CDS	ENST00000376030	ENST00000445105		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000376030	ENST00000264730		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000376030	ENST00000454309		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000376030	ENST00000450716		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000376030	ENST00000430714		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-intron	ENST00000376030	ENST00000466144		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000503743	ENST00000445105		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000503743	ENST00000264730		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000503743	ENST00000454309		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000503743	ENST00000450716		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000503743	ENST00000430714		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-intron	ENST00000503743	ENST00000466144		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000422387	ENST00000445105		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000422387	ENST00000264730		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000422387	ENST00000454309		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000422387	ENST00000450716		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000422387	ENST00000430714		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-intron	ENST00000422387	ENST00000466144		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000361144	ENST00000445105		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000361144	ENST00000264730		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000361144	ENST00000454309		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000361144	ENST00000450716		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000361144	ENST00000430714		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-intron	ENST00000361144	ENST00000466144		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400798	ENST00000445105		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400798	ENST00000264730		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400798	ENST00000454309		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400798	ENST00000450716		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400798	ENST00000430714		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-intron	ENST00000400798	ENST00000466144		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400797	ENST00000445105		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400797	ENST00000264730		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400797	ENST00000454309		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400797	ENST00000450716		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-3CDS	ENST00000400797	ENST00000430714		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
intron-intron	ENST00000400797	ENST00000466144		TCGA	LD	LUSC	TCGA-66-2790-01A	KAZN	chr1	14507087	+	FGF12	chr3	191888445	-
5CDS-3UTR	ENST00000550703	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000550703	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000550703	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-5UTR	ENST00000550703	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000551590	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000551590	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000551590	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-5UTR	ENST00000551590	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000397655	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000397655	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000397655	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-5UTR	ENST00000397655	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000471804	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000471804	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000471804	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-5UTR	ENST00000471804	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5UTR-3UTR	ENST00000377654	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5UTR-3UTR	ENST00000377654	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5UTR-3UTR	ENST00000377654	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5UTR-5UTR	ENST00000377654	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000397659	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000397659	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-3UTR	ENST00000397659	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
5CDS-5UTR	ENST00000397659	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
3UTR-3UTR	ENST00000551555	ENST00000550317		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
3UTR-3UTR	ENST00000551555	ENST00000545036		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
3UTR-3UTR	ENST00000551555	ENST00000308208		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
3UTR-5UTR	ENST00000551555	ENST00000552694		TCGA	LD	LUSC	TCGA-66-2791-01A	TCTN1	chr12	111057761	+	CCDC63	chr12	111296390	+
Frame-shit	ENST00000286371	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2792-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141526487	+
5UTR-3CDS	ENST00000539728	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2792-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141526487	+
5UTR-3CDS	ENST00000462082	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2792-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141526487	+
intron-3CDS	ENST00000484727	ENST00000264952		TCGA	LD	LUSC	TCGA-66-2792-01A	ATP1B3	chr3	141595752	+	GRK7	chr3	141526487	+
intron-3CDS	ENST00000419727	ENST00000238667		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000419727	ENST00000539311		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3UTR	ENST00000419727	ENST00000556241		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-5UTR	ENST00000419727	ENST00000553587		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000419727	ENST00000556856		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000419727	ENST00000555027		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000559773	ENST00000238667		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000559773	ENST00000539311		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3UTR	ENST00000559773	ENST00000556241		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-5UTR	ENST00000559773	ENST00000553587		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000559773	ENST00000556856		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000559773	ENST00000555027		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000437176	ENST00000238667		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000437176	ENST00000539311		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3UTR	ENST00000437176	ENST00000556241		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-5UTR	ENST00000437176	ENST00000553587		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000437176	ENST00000556856		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000437176	ENST00000555027		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000435893	ENST00000238667		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3CDS	ENST00000435893	ENST00000539311		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-3UTR	ENST00000435893	ENST00000556241		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-5UTR	ENST00000435893	ENST00000553587		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000435893	ENST00000556856		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
intron-intron	ENST00000435893	ENST00000555027		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
Frame-shit	ENST00000267569	ENST00000238667		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
Frame-shit	ENST00000267569	ENST00000539311		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
5CDS-3UTR	ENST00000267569	ENST00000556241		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
5CDS-5UTR	ENST00000267569	ENST00000553587		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
5CDS-intron	ENST00000267569	ENST00000556856		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
5CDS-intron	ENST00000267569	ENST00000555027		TCGA	LD	LUSC	TCGA-66-2793-01A	JDP2	chr14	75899039	+	FLVCR2	chr14	76088422	+
5UTR-5UTR	ENST00000376566	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000376563	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000376548	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000447146	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
3UTR-5UTR	ENST00000473764	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000247140	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000218224	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000396763	ENST00000338270		TCGA	LD	LUSC	TCGA-66-2793-01A	PQBP1	chrX	48755297	+	ERAS	chrX	48687491	+
5CDS-5UTR	ENST00000327283	ENST00000331825		TCGA	LD	LUSC	TCGA-66-2793-01A	PTPN2	chr18	12859163	-	FTL	chr19	49468607	+
5CDS-5UTR	ENST00000591115	ENST00000331825		TCGA	LD	LUSC	TCGA-66-2793-01A	PTPN2	chr18	12859163	-	FTL	chr19	49468607	+
5CDS-5UTR	ENST00000353319	ENST00000331825		TCGA	LD	LUSC	TCGA-66-2793-01A	PTPN2	chr18	12859163	-	FTL	chr19	49468607	+
5CDS-5UTR	ENST00000309660	ENST00000331825		TCGA	LD	LUSC	TCGA-66-2793-01A	PTPN2	chr18	12859163	-	FTL	chr19	49468607	+
5UTR-5UTR	ENST00000589086	ENST00000331825		TCGA	LD	LUSC	TCGA-66-2793-01A	PTPN2	chr18	12859163	-	FTL	chr19	49468607	+
intron-5UTR	ENST00000591497	ENST00000331825		TCGA	LD	LUSC	TCGA-66-2793-01A	PTPN2	chr18	12859163	-	FTL	chr19	49468607	+
5CDS-intron	ENST00000406091	ENST00000408388		TCGA	LD	LUSC	TCGA-66-2793-01A	RIMS2	chr8	104513290	+	PVT1	chr8	128867401	+
intron-intron	ENST00000262231	ENST00000408388		TCGA	LD	LUSC	TCGA-66-2793-01A	RIMS2	chr8	104513290	+	PVT1	chr8	128867401	+
intron-intron	ENST00000507740	ENST00000408388		TCGA	LD	LUSC	TCGA-66-2793-01A	RIMS2	chr8	104513290	+	PVT1	chr8	128867401	+
intron-intron	ENST00000522174	ENST00000408388		TCGA	LD	LUSC	TCGA-66-2793-01A	RIMS2	chr8	104513290	+	PVT1	chr8	128867401	+
intron-intron	ENST00000436393	ENST00000408388		TCGA	LD	LUSC	TCGA-66-2793-01A	RIMS2	chr8	104513290	+	PVT1	chr8	128867401	+
intron-intron	ENST00000339750	ENST00000408388		TCGA	LD	LUSC	TCGA-66-2793-01A	RIMS2	chr8	104513290	+	PVT1	chr8	128867401	+
In-frame	ENST00000237530	ENST00000279022		TCGA	LD	LUSC	TCGA-66-2793-01A	RPN2	chr20	35842268	+	MYL9	chr20	35177480	+
In-frame	ENST00000237530	ENST00000346786		TCGA	LD	LUSC	TCGA-66-2793-01A	RPN2	chr20	35842268	+	MYL9	chr20	35177480	+
In-frame	ENST00000373622	ENST00000279022		TCGA	LD	LUSC	TCGA-66-2793-01A	RPN2	chr20	35842268	+	MYL9	chr20	35177480	+
In-frame	ENST00000373622	ENST00000346786		TCGA	LD	LUSC	TCGA-66-2793-01A	RPN2	chr20	35842268	+	MYL9	chr20	35177480	+
intron-3CDS	ENST00000470352	ENST00000279022		TCGA	LD	LUSC	TCGA-66-2793-01A	RPN2	chr20	35842268	+	MYL9	chr20	35177480	+
intron-3CDS	ENST00000470352	ENST00000346786		TCGA	LD	LUSC	TCGA-66-2793-01A	RPN2	chr20	35842268	+	MYL9	chr20	35177480	+
In-frame	ENST00000504734	ENST00000394440		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000504734	ENST00000461540		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000504734	ENST00000544079		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000504734	ENST00000544185		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000504734	ENST00000538252		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
In-frame	ENST00000415618	ENST00000394440		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000415618	ENST00000461540		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000415618	ENST00000544079		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000415618	ENST00000544185		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000415618	ENST00000538252		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
In-frame	ENST00000452673	ENST00000394440		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000452673	ENST00000461540		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000452673	ENST00000544079		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000452673	ENST00000544185		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000452673	ENST00000538252		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
In-frame	ENST00000247461	ENST00000394440		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000247461	ENST00000461540		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000247461	ENST00000544079		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000247461	ENST00000544185		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000247461	ENST00000538252		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
In-frame	ENST00000512607	ENST00000394440		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000512607	ENST00000461540		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000512607	ENST00000544079		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000512607	ENST00000544185		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000512607	ENST00000538252		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
3UTR-3CDS	ENST00000503126	ENST00000394440		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
3UTR-intron	ENST00000503126	ENST00000461540		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
3UTR-intron	ENST00000503126	ENST00000544079		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
3UTR-intron	ENST00000503126	ENST00000544185		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
3UTR-intron	ENST00000503126	ENST00000538252		TCGA	LD	LUSC	TCGA-66-2795-01A	CANX	chr5	179136060	+	CCT4	chr2	62099723	-
5CDS-intron	ENST00000244137	ENST00000472647		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
5CDS-intron	ENST00000244137	ENST00000367811		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
5CDS-intron	ENST00000244137	ENST00000469474		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
intron-intron	ENST00000397032	ENST00000472647		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
intron-intron	ENST00000397032	ENST00000367811		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
intron-intron	ENST00000397032	ENST00000469474		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
5CDS-intron	ENST00000436370	ENST00000472647		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
5CDS-intron	ENST00000436370	ENST00000367811		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
5CDS-intron	ENST00000436370	ENST00000469474		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
intron-intron	ENST00000591968	ENST00000472647		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
intron-intron	ENST00000591968	ENST00000367811		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
intron-intron	ENST00000591968	ENST00000469474		TCGA	LD	LUSC	TCGA-66-2795-01A	PEPD	chr19	33953901	-	NME7	chr1	169293738	-
Frame-shit	ENST00000336452	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336452	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336452	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336452	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336452	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336458	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336458	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336458	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336458	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000336458	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000576930	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000576930	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000576930	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000576930	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000576930	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000572815	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000572815	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000572815	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000572815	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000572815	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000573542	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000573542	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000573542	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000573542	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000573542	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000419711	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000419711	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000419711	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000419711	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000419711	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000571955	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000571955	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000571955	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000571955	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000571955	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000416016	ENST00000393119		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000416016	ENST00000313863		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000416016	ENST00000337050		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000416016	ENST00000537529		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000416016	ENST00000546108		TCGA	LD	LUSC	TCGA-66-2800-01A	EIF5A	chr17	7213119	+	MKS1	chr17	56285944	-
Frame-shit	ENST00000351193	ENST00000325748		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000351193	ENST00000438687		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000351193	ENST00000487082		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000351193	ENST00000432031		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
5CDS-intron	ENST00000351193	ENST00000470200		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000472947	ENST00000325748		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000472947	ENST00000438687		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000472947	ENST00000487082		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000472947	ENST00000432031		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
5CDS-intron	ENST00000472947	ENST00000470200		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000460469	ENST00000325748		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000460469	ENST00000438687		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000460469	ENST00000487082		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
Frame-shit	ENST00000460469	ENST00000432031		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
5CDS-intron	ENST00000460469	ENST00000470200		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
intron-3CDS	ENST00000478160	ENST00000325748		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
intron-3CDS	ENST00000478160	ENST00000438687		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
intron-3CDS	ENST00000478160	ENST00000487082		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
intron-3CDS	ENST00000478160	ENST00000432031		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
intron-intron	ENST00000478160	ENST00000470200		TCGA	LD	LUSC	TCGA-66-2800-01A	NMD3	chr3	160942852	+	PRKRA	chr2	179308111	-
5CDS-3UTR	ENST00000580123	ENST00000577702		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000580123	ENST00000310827		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000580123	ENST00000431926		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000580123	ENST00000415273		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
3UTR-3UTR	ENST00000585293	ENST00000577702		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
3UTR-3UTR	ENST00000585293	ENST00000310827		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
3UTR-3UTR	ENST00000585293	ENST00000431926		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
3UTR-intron	ENST00000585293	ENST00000415273		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000329783	ENST00000577702		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000329783	ENST00000310827		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000329783	ENST00000431926		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000329783	ENST00000415273		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000450736	ENST00000577702		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000450736	ENST00000310827		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000450736	ENST00000431926		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000450736	ENST00000415273		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000538213	ENST00000577702		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000538213	ENST00000310827		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-3UTR	ENST00000538213	ENST00000431926		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000538213	ENST00000415273		TCGA	LD	LUSC	TCGA-66-2800-01A	SLC16A5	chr17	73094276	+	DCAF7	chr17	61655831	+
5CDS-intron	ENST00000465804	ENST00000410534		TCGA	LD	LUSC	TCGA-68-7755-01A	WWTR1	chr3	149290651	-	SOX2-OT	chr3	181281508	+
5CDS-intron	ENST00000360632	ENST00000410534		TCGA	LD	LUSC	TCGA-68-7755-01A	WWTR1	chr3	149290651	-	SOX2-OT	chr3	181281508	+
5CDS-intron	ENST00000467467	ENST00000410534		TCGA	LD	LUSC	TCGA-68-7755-01A	WWTR1	chr3	149290651	-	SOX2-OT	chr3	181281508	+
intron-intron	ENST00000474080	ENST00000410534		TCGA	LD	LUSC	TCGA-68-7755-01A	WWTR1	chr3	149290651	-	SOX2-OT	chr3	181281508	+
5UTR-3CDS	ENST00000373566	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373566	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373566	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373566	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373566	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-intron	ENST00000373566	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373563	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373563	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373563	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373563	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000373563	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-intron	ENST00000373563	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409480	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409480	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409480	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409480	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409480	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-intron	ENST00000409480	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409547	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409547	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409547	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409547	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409547	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-intron	ENST00000409547	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409196	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409196	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409196	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409196	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409196	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-intron	ENST00000409196	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409451	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409451	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409451	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409451	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-3CDS	ENST00000409451	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5UTR-intron	ENST00000409451	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
3UTR-3CDS	ENST00000482666	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
3UTR-3CDS	ENST00000482666	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
3UTR-3CDS	ENST00000482666	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
3UTR-3CDS	ENST00000482666	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
3UTR-3CDS	ENST00000482666	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
3UTR-intron	ENST00000482666	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000452341	ENST00000347464		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000452341	ENST00000392017		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000452341	ENST00000373525		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000452341	ENST00000392020		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
intron-3CDS	ENST00000452341	ENST00000392018		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
intron-intron	ENST00000452341	ENST00000498620		TCGA	LD	LUSC	TCGA-68-8250-01A	GIGYF2	chr2	233562102	+	ATG16L1	chr2	234164748	+
5CDS-intron	ENST00000282111	ENST00000409528		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
5CDS-intron	ENST00000282111	ENST00000409173		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
5CDS-intron	ENST00000282111	ENST00000412401		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
5CDS-intron	ENST00000282111	ENST00000486293		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
intron-intron	ENST00000494519	ENST00000409528		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
intron-intron	ENST00000494519	ENST00000409173		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
intron-intron	ENST00000494519	ENST00000412401		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
intron-intron	ENST00000494519	ENST00000486293		TCGA	LD	LUSC	TCGA-68-8250-01A	TCF7L1	chr2	85510701	+	TMEM182	chr2	103549343	+
5CDS-5UTR	ENST00000258243	ENST00000520268		TCGA	LD	LUSC	TCGA-68-8250-01A	URB2	chr1	229763506	+	KB-1562D12.1	chr8	102473845	-
In-frame	ENST00000323959	ENST00000335185		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000323959	ENST00000534415		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000323959	ENST00000531481		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
In-frame	ENST00000524827	ENST00000335185		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000524827	ENST00000534415		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000524827	ENST00000531481		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5UTR-3CDS	ENST00000526480	ENST00000335185		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5UTR-5UTR	ENST00000526480	ENST00000534415		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5UTR-5UTR	ENST00000526480	ENST00000531481		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
In-frame	ENST00000438862	ENST00000335185		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000438862	ENST00000534415		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000438862	ENST00000531481		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
In-frame	ENST00000431742	ENST00000335185		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000431742	ENST00000534415		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
5CDS-5UTR	ENST00000431742	ENST00000531481		TCGA	LD	LUSC	TCGA-68-8251-01A	CSTF3	chr11	33182845	-	CCDC73	chr11	32705120	-
Frame-shit	ENST00000356175	ENST00000333942		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000356175	ENST00000358365		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000356175	ENST00000583994		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000356175	ENST00000545287		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000356175	ENST00000354266		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000356175	ENST00000394692		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000356175	ENST00000581094		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000356175	ENST00000580976		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000358273	ENST00000333942		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000358273	ENST00000358365		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000358273	ENST00000583994		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000358273	ENST00000545287		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000358273	ENST00000354266		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000358273	ENST00000394692		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000358273	ENST00000581094		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000358273	ENST00000580976		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000431387	ENST00000333942		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
Frame-shit	ENST00000431387	ENST00000358365		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000431387	ENST00000583994		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000431387	ENST00000545287		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000431387	ENST00000354266		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000431387	ENST00000394692		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-5UTR	ENST00000431387	ENST00000581094		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
5CDS-intron	ENST00000431387	ENST00000580976		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-3CDS	ENST00000581113	ENST00000333942		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-3CDS	ENST00000581113	ENST00000358365		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000581113	ENST00000583994		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000581113	ENST00000545287		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000581113	ENST00000354266		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000581113	ENST00000394692		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000581113	ENST00000581094		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-intron	ENST00000581113	ENST00000580976		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-3CDS	ENST00000417592	ENST00000333942		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-3CDS	ENST00000417592	ENST00000358365		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000417592	ENST00000583994		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000417592	ENST00000545287		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000417592	ENST00000354266		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000417592	ENST00000394692		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000417592	ENST00000581094		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-intron	ENST00000417592	ENST00000580976		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-3CDS	ENST00000444181	ENST00000333942		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-3CDS	ENST00000444181	ENST00000358365		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000444181	ENST00000583994		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000444181	ENST00000545287		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000444181	ENST00000354266		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000444181	ENST00000394692		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-5UTR	ENST00000444181	ENST00000581094		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
intron-intron	ENST00000444181	ENST00000580976		TCGA	LD	LUSC	TCGA-68-8251-01A	NF1	chr17	29422387	+	RHOT1	chr17	30498062	+
In-frame	ENST00000396556	ENST00000370206		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
In-frame	ENST00000396556	ENST00000538964		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
In-frame	ENST00000396556	ENST00000394202		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5CDS-5UTR	ENST00000396556	ENST00000545882		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5CDS-intron	ENST00000396556	ENST00000487539		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
intron-3CDS	ENST00000438237	ENST00000370206		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
intron-3CDS	ENST00000438237	ENST00000538964		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
intron-3CDS	ENST00000438237	ENST00000394202		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
intron-5UTR	ENST00000438237	ENST00000545882		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
intron-intron	ENST00000438237	ENST00000487539		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5UTR-3CDS	ENST00000467647	ENST00000370206		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5UTR-3CDS	ENST00000467647	ENST00000538964		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5UTR-3CDS	ENST00000467647	ENST00000394202		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5UTR-5UTR	ENST00000467647	ENST00000545882		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
5UTR-intron	ENST00000467647	ENST00000487539		TCGA	LD	LUSC	TCGA-68-8251-01A	OSBPL10	chr3	31871532	-	CNN3	chr1	95369080	-
In-frame	ENST00000585331	ENST00000327283		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000585331	ENST00000591115		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000585331	ENST00000353319		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000585331	ENST00000309660		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
5CDS-intron	ENST00000585331	ENST00000589086		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
5CDS-intron	ENST00000585331	ENST00000591497		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000317615	ENST00000327283		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000317615	ENST00000591115		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000317615	ENST00000353319		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000317615	ENST00000309660		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
5CDS-intron	ENST00000317615	ENST00000589086		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
5CDS-intron	ENST00000317615	ENST00000591497		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000590217	ENST00000327283		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000590217	ENST00000591115		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000590217	ENST00000353319		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
In-frame	ENST00000590217	ENST00000309660		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
5CDS-intron	ENST00000590217	ENST00000589086		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
5CDS-intron	ENST00000590217	ENST00000591497		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
intron-3CDS	ENST00000589405	ENST00000327283		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
intron-3CDS	ENST00000589405	ENST00000591115		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
intron-3CDS	ENST00000589405	ENST00000353319		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
intron-3CDS	ENST00000589405	ENST00000309660		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
intron-intron	ENST00000589405	ENST00000589086		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
intron-intron	ENST00000589405	ENST00000591497		TCGA	LD	LUSC	TCGA-68-8251-01A	PSMG2	chr18	12724618	+	PTPN2	chr18	12825943	-
Frame-shit	ENST00000333942	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000333942	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000333942	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000358365	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000358365	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000358365	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000583994	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000583994	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000583994	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000545287	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000545287	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000545287	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000354266	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000354266	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000354266	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000394692	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000394692	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000394692	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000581094	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000581094	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
Frame-shit	ENST00000581094	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
intron-3CDS	ENST00000580976	ENST00000269051		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
intron-3CDS	ENST00000580976	ENST00000538145		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
intron-3CDS	ENST00000580976	ENST00000536287		TCGA	LD	LUSC	TCGA-68-8251-01A	RHOT1	chr17	30528075	+	RHBDL3	chr17	30643251	+
5CDS-5UTR	ENST00000484532	ENST00000378518		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000484532	ENST00000605895		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000484532	ENST00000378513		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000484532	ENST00000378512		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000484532	ENST00000488353		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000234875	ENST00000378518		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000234875	ENST00000605895		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000234875	ENST00000378513		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000234875	ENST00000378512		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000234875	ENST00000488353		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000497965	ENST00000378518		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000497965	ENST00000605895		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000497965	ENST00000378513		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000497965	ENST00000378512		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000497965	ENST00000488353		TCGA	LD	LUSC	TCGA-68-8251-01A	RPL22	chr1	6257712	-	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000380548	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-intron	ENST00000380548	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
intron-5UTR	ENST00000380545	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
intron-intron	ENST00000380545	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-5UTR	ENST00000327883	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-intron	ENST00000327883	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-5UTR	ENST00000431052	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-intron	ENST00000431052	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-5UTR	ENST00000380570	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-intron	ENST00000380570	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-5UTR	ENST00000380566	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-intron	ENST00000380566	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-5UTR	ENST00000276935	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-intron	ENST00000276935	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
intron-5UTR	ENST00000496521	ENST00000394323		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
intron-intron	ENST00000496521	ENST00000528878		TCGA	LD	LUSC	TCGA-68-A59I-01A	ADAMTSL1	chr9	18504954	+	ERV3-1	chr7	64453792	-
5CDS-3UTR	ENST00000397906	ENST00000540687		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-intron	ENST00000397906	ENST00000566220		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-3UTR	ENST00000397906	ENST00000519077		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-intron	ENST00000397906	ENST00000521091		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-3UTR	ENST00000397906	ENST00000569149		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-3UTR	ENST00000397906	ENST00000563812		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-3UTR	ENST00000397906	ENST00000602393		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-intron	ENST00000397906	ENST00000602971		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
5CDS-intron	ENST00000397906	ENST00000569384		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-3UTR	ENST00000490475	ENST00000540687		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-intron	ENST00000490475	ENST00000566220		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-3UTR	ENST00000490475	ENST00000519077		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-intron	ENST00000490475	ENST00000521091		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-3UTR	ENST00000490475	ENST00000569149		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-3UTR	ENST00000490475	ENST00000563812		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-3UTR	ENST00000490475	ENST00000602393		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-intron	ENST00000490475	ENST00000602971		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
intron-intron	ENST00000490475	ENST00000569384		TCGA	LD	LUSC	TCGA-68-A59I-01A	TTC28	chr22	28692186	-	TUG1	chr22	31368841	+
Frame-shit	ENST00000549578	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
Frame-shit	ENST00000549578	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5CDS-intron	ENST00000549578	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000549578	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
Frame-shit	ENST00000360579	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
Frame-shit	ENST00000360579	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5CDS-intron	ENST00000360579	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5CDS-3UTR	ENST00000360579	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
intron-3CDS	ENST00000552130	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
intron-3CDS	ENST00000552130	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
intron-intron	ENST00000552130	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
intron-3UTR	ENST00000552130	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000447578	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000447578	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-intron	ENST00000447578	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3UTR	ENST00000447578	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000546588	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000546588	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-intron	ENST00000546588	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3UTR	ENST00000546588	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000549970	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000549970	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-intron	ENST00000549970	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3UTR	ENST00000549970	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000551655	ENST00000377710		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3CDS	ENST00000551655	ENST00000377709		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-intron	ENST00000551655	ENST00000377704		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5UTR-3UTR	ENST00000551655	ENST00000467391		TCGA	LD	LUSC	TCGA-68-A59I-01A	VPS29	chr12	110939854	-	MGME1	chr20	17968809	+
5CDS-5UTR	ENST00000544604	ENST00000352645		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000544604	ENST00000351589		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000332811	ENST00000352645		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000332811	ENST00000351589		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000402174	ENST00000352645		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000402174	ENST00000351589		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000406323	ENST00000352645		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
5CDS-5UTR	ENST00000406323	ENST00000351589		TCGA	LD	LUSC	TCGA-68-A59I-01A	ZNRF3	chr22	29383189	+	ZC3H7B	chr22	41716659	+
intron-3CDS	ENST00000470862	ENST00000298375		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000470862	ENST00000525281		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000470862	ENST00000532248		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000470862	ENST00000334019		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
intron-3UTR	ENST00000470862	ENST00000345253		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
In-frame	ENST00000605149	ENST00000298375		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000605149	ENST00000525281		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000605149	ENST00000532248		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000605149	ENST00000334019		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000605149	ENST00000345253		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
In-frame	ENST00000439082	ENST00000298375		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000439082	ENST00000525281		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000439082	ENST00000532248		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000439082	ENST00000334019		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000439082	ENST00000345253		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
In-frame	ENST00000380554	ENST00000298375		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000380554	ENST00000525281		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000380554	ENST00000532248		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000380554	ENST00000334019		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-3UTR	ENST00000380554	ENST00000345253		TCGA	LD	LUSC	TCGA-68-A59J-01A	AKR1C3	chr10	5139742	+	AKR1E2	chr10	4872867	+
5CDS-intron	ENST00000521654	ENST00000608456		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000521654	ENST00000368377		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000521654	ENST00000608295		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000521654	ENST00000398153		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000521654	ENST00000608284		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000560949	ENST00000608456		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000560949	ENST00000368377		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000560949	ENST00000608295		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000560949	ENST00000398153		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000560949	ENST00000608284		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
intron-intron	ENST00000454842	ENST00000608456		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
intron-intron	ENST00000454842	ENST00000368377		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
intron-3UTR	ENST00000454842	ENST00000608295		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
intron-3UTR	ENST00000454842	ENST00000398153		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
intron-intron	ENST00000454842	ENST00000608284		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5UTR-intron	ENST00000368414	ENST00000608456		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5UTR-intron	ENST00000368414	ENST00000368377		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5UTR-3UTR	ENST00000368414	ENST00000608295		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5UTR-3UTR	ENST00000368414	ENST00000398153		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5UTR-intron	ENST00000368414	ENST00000608284		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000359704	ENST00000608456		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000359704	ENST00000368377		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000359704	ENST00000608295		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000359704	ENST00000398153		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000359704	ENST00000608284		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000275184	ENST00000608456		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000275184	ENST00000368377		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000275184	ENST00000608295		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-3UTR	ENST00000275184	ENST00000398153		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
5CDS-intron	ENST00000275184	ENST00000608284		TCGA	LD	LUSC	TCGA-68-A59J-01A	RNF217	chr6	125379252	+	HDDC2	chr6	125598386	-
Frame-shit	ENST00000361337	ENST00000359271		TCGA	LD	LUSC	TCGA-6A-AB49-01A	TOP1	chr20	39746936	+	SLC2A10	chr20	45357992	+
5CDS-intron	ENST00000361337	ENST00000486000		TCGA	LD	LUSC	TCGA-6A-AB49-01A	TOP1	chr20	39746936	+	SLC2A10	chr20	45357992	+
In-frame	ENST00000396472	ENST00000542754		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000396472	ENST00000313566		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000396472	ENST00000216366		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000396472	ENST00000334725		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000396472	ENST00000554609		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000396472	ENST00000554345		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
In-frame	ENST00000382406	ENST00000542754		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000382406	ENST00000313566		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000382406	ENST00000216366		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000382406	ENST00000334725		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000382406	ENST00000554609		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000382406	ENST00000554345		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
In-frame	ENST00000280987	ENST00000542754		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000280987	ENST00000313566		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000280987	ENST00000216366		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000280987	ENST00000334725		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000280987	ENST00000554609		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000280987	ENST00000554345		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
3UTR-3CDS	ENST00000554052	ENST00000542754		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
3UTR-intron	ENST00000554052	ENST00000313566		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
3UTR-intron	ENST00000554052	ENST00000216366		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
3UTR-intron	ENST00000554052	ENST00000334725		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
3UTR-intron	ENST00000554052	ENST00000554609		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
3UTR-intron	ENST00000554052	ENST00000554345		TCGA	LD	LUSC	TCGA-70-6722-01A	FAM177A1	chr14	35515834	+	AP4S1	chr14	31549779	+
5CDS-intron	ENST00000295874	ENST00000467026		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
5CDS-intron	ENST00000295874	ENST00000397708		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
5CDS-intron	ENST00000295874	ENST00000291688		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
5CDS-intron	ENST00000474889	ENST00000467026		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
5CDS-intron	ENST00000474889	ENST00000397708		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
5CDS-intron	ENST00000474889	ENST00000291688		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
3UTR-intron	ENST00000495879	ENST00000467026		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
3UTR-intron	ENST00000495879	ENST00000397708		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
3UTR-intron	ENST00000495879	ENST00000291688		TCGA	LD	LUSC	TCGA-70-6722-01A	PTPRG	chr3	61734656	+	MCM3AP	chr21	47700051	-
intron-5UTR	ENST00000331925	ENST00000520429		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000331925	ENST00000369220		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000331925	ENST00000520371		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000331925	ENST00000523799		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000331925	ENST00000523985		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000331925	ENST00000518714		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000331925	ENST00000521017		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000331925	ENST00000482541		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000573283	ENST00000520429		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000573283	ENST00000369220		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000573283	ENST00000520371		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000573283	ENST00000523799		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000573283	ENST00000523985		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000573283	ENST00000518714		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000573283	ENST00000521017		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000573283	ENST00000482541		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575842	ENST00000520429		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575842	ENST00000369220		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575842	ENST00000520371		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575842	ENST00000523799		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575842	ENST00000523985		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575842	ENST00000518714		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575842	ENST00000521017		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575842	ENST00000482541		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575087	ENST00000520429		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575087	ENST00000369220		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575087	ENST00000520371		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575087	ENST00000523799		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575087	ENST00000523985		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-5UTR	ENST00000575087	ENST00000518714		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575087	ENST00000521017		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
intron-intron	ENST00000575087	ENST00000482541		TCGA	LD	LUSC	TCGA-70-6723-01A	ACTG1	chr17	79477712	-	CCNC	chr6	100016527	-
Frame-shit	ENST00000396401	ENST00000455089		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000396401	ENST00000342916		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000396401	ENST00000344576		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000396401	ENST00000420316		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000396401	ENST00000275493		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000396401	ENST00000442591		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000396401	ENST00000463948		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000396401	ENST00000454757		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000521604	ENST00000455089		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000521604	ENST00000342916		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000521604	ENST00000344576		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000521604	ENST00000420316		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000521604	ENST00000275493		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000521604	ENST00000442591		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000521604	ENST00000463948		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000521604	ENST00000454757		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000521086	ENST00000455089		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000521086	ENST00000342916		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000521086	ENST00000344576		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000521086	ENST00000420316		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000521086	ENST00000275493		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000521086	ENST00000442591		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-intron	ENST00000521086	ENST00000463948		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-5UTR	ENST00000521086	ENST00000454757		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000522635	ENST00000455089		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000522635	ENST00000342916		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000522635	ENST00000344576		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000522635	ENST00000420316		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000522635	ENST00000275493		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000522635	ENST00000442591		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000522635	ENST00000463948		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000522635	ENST00000454757		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000520534	ENST00000455089		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000520534	ENST00000342916		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000520534	ENST00000344576		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000520534	ENST00000420316		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000520534	ENST00000275493		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000520534	ENST00000442591		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000520534	ENST00000463948		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000520534	ENST00000454757		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000518784	ENST00000455089		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000518784	ENST00000342916		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000518784	ENST00000344576		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000518784	ENST00000420316		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000518784	ENST00000275493		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
Frame-shit	ENST00000518784	ENST00000442591		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-intron	ENST00000518784	ENST00000463948		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5CDS-5UTR	ENST00000518784	ENST00000454757		TCGA	LD	LUSC	TCGA-70-6723-01A	TCEA1	chr8	54934623	-	EGFR	chr7	55209979	+
5UTR-3CDS	ENST00000599879	ENST00000443236		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
5UTR-intron	ENST00000599879	ENST00000597335		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
5UTR-intron	ENST00000599879	ENST00000388925		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
intron-3CDS	ENST00000357774	ENST00000443236		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
intron-intron	ENST00000357774	ENST00000597335		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
intron-intron	ENST00000357774	ENST00000388925		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
intron-3CDS	ENST00000601553	ENST00000443236		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
intron-intron	ENST00000601553	ENST00000597335		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
intron-intron	ENST00000601553	ENST00000388925		TCGA	LD	LUSC	TCGA-70-6723-01A	ZNF98	chr19	22715141	-	CPAMD8	chr19	17036182	-
5CDS-intron	ENST00000406337	ENST00000342228		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000406337	ENST00000520262		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000406337	ENST00000520179		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-5UTR	ENST00000406337	ENST00000523340		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000265713	ENST00000342228		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000265713	ENST00000520262		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000265713	ENST00000520179		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-5UTR	ENST00000265713	ENST00000523340		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000396930	ENST00000342228		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000396930	ENST00000520262		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000396930	ENST00000520179		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-5UTR	ENST00000396930	ENST00000523340		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000485568	ENST00000342228		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000485568	ENST00000520262		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-intron	ENST00000485568	ENST00000520179		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-5UTR	ENST00000485568	ENST00000523340		TCGA	LD	LUSC	TCGA-77-6842-01A	KAT6A	chr8	41905896	-	SLC20A2	chr8	42390478	-
5CDS-5UTR	ENST00000392935	ENST00000220812		TCGA	LD	LUSC	TCGA-77-6842-01A	VDAC3	chr8	42252651	+	DKK4	chr8	42234690	-
5CDS-5UTR	ENST00000522572	ENST00000220812		TCGA	LD	LUSC	TCGA-77-6842-01A	VDAC3	chr8	42252651	+	DKK4	chr8	42234690	-
5CDS-5UTR	ENST00000521158	ENST00000220812		TCGA	LD	LUSC	TCGA-77-6842-01A	VDAC3	chr8	42252651	+	DKK4	chr8	42234690	-
5CDS-5UTR	ENST00000022615	ENST00000220812		TCGA	LD	LUSC	TCGA-77-6842-01A	VDAC3	chr8	42252651	+	DKK4	chr8	42234690	-
3UTR-intron	ENST00000486447	ENST00000363840		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
3UTR-intron	ENST00000486447	ENST00000365524		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
3UTR-intron	ENST00000486447	ENST00000364822		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
3UTR-intron	ENST00000486447	ENST00000363859		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
3UTR-intron	ENST00000486447	ENST00000385578		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
3UTR-intron	ENST00000486447	ENST00000363146		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
3UTR-intron	ENST00000486447	ENST00000364084		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000363840		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000365524		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000364822		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000363859		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000385578		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000363146		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
5CDS-intron	ENST00000238892	ENST00000364084		TCGA	LD	LUSC	TCGA-77-6845-01A	CRIPT	chr2	46846820	+	GAS5	chr1	173835705	-
Frame-shit	ENST00000324856	ENST00000307961		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
Frame-shit	ENST00000324856	ENST00000568588		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
5CDS-intron	ENST00000324856	ENST00000564517		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
Frame-shit	ENST00000457599	ENST00000307961		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
Frame-shit	ENST00000457599	ENST00000568588		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
5CDS-intron	ENST00000457599	ENST00000564517		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
Frame-shit	ENST00000374152	ENST00000307961		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
Frame-shit	ENST00000374152	ENST00000568588		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
5CDS-intron	ENST00000374152	ENST00000564517		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
intron-3CDS	ENST00000540690	ENST00000307961		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
intron-3CDS	ENST00000540690	ENST00000568588		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
intron-intron	ENST00000540690	ENST00000564517		TCGA	LD	LUSC	TCGA-77-7139-01A	ARID1A	chr1	27059283	+	RPL4	chr15	66792685	-
In-frame	ENST00000440884	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000440884	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000440884	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
In-frame	ENST00000416682	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000416682	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000416682	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
In-frame	ENST00000429436	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000429436	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000429436	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
In-frame	ENST00000303622	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000303622	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000303622	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
In-frame	ENST00000216288	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000216288	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000216288	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
In-frame	ENST00000553942	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000553942	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000553942	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
In-frame	ENST00000335102	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000335102	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5CDS-intron	ENST00000335102	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
3UTR-3CDS	ENST00000561071	ENST00000409874		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
3UTR-intron	ENST00000561071	ENST00000339063		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
3UTR-intron	ENST00000561071	ENST00000554571		TCGA	LD	LUSC	TCGA-77-7139-01A	MARK3	chr14	103958371	+	TDRD9	chr14	104506533	+
5UTR-3CDS	ENST00000396029	ENST00000372409		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
5UTR-intron	ENST00000396029	ENST00000479348		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-3CDS	ENST00000396032	ENST00000372409		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-intron	ENST00000396032	ENST00000479348		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-3CDS	ENST00000371602	ENST00000372409		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-intron	ENST00000371602	ENST00000479348		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-3CDS	ENST00000349014	ENST00000372409		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-intron	ENST00000349014	ENST00000479348		TCGA	LD	LUSC	TCGA-77-7140-01A	ADNP	chr20	49545188	-	PCIF1	chr20	44569692	+
intron-5UTR	ENST00000392975	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
5UTR-5UTR	ENST00000360793	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
intron-5UTR	ENST00000584031	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
intron-5UTR	ENST00000392976	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
5UTR-5UTR	ENST00000582297	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
intron-5UTR	ENST00000581573	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
5UTR-5UTR	ENST00000448884	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
5UTR-5UTR	ENST00000582034	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
intron-5UTR	ENST00000542042	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
intron-5UTR	ENST00000581163	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
intron-5UTR	ENST00000582997	ENST00000430983		TCGA	LD	LUSC	TCGA-77-7140-01A	CYB561	chr17	61523606	-	AMZ2P1	chr17	62964499	-
5CDS-intron	ENST00000370256	ENST00000400522		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000370256	ENST00000524882		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000260506	ENST00000400522		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000260506	ENST00000524882		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000271234	ENST00000400522		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000271234	ENST00000524882		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000604705	ENST00000400522		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000604705	ENST00000524882		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000370253	ENST00000400522		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-intron	ENST00000370253	ENST00000524882		TCGA	LD	LUSC	TCGA-77-7140-01A	FNBP1L	chr1	93965140	+	EFCAB8	chr20	31531442	+
5CDS-5UTR	ENST00000262646	ENST00000272203		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000262646	ENST00000414478		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000262646	ENST00000485632		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000531289	ENST00000272203		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000531289	ENST00000414478		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000531289	ENST00000485632		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000529579	ENST00000272203		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000529579	ENST00000414478		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000529579	ENST00000485632		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
3UTR-5UTR	ENST00000530071	ENST00000272203		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
3UTR-5UTR	ENST00000530071	ENST00000414478		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
3UTR-intron	ENST00000530071	ENST00000485632		TCGA	LD	LUSC	TCGA-77-7140-01A	RAB2A	chr8	61497374	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000186436	ENST00000470054		TCGA	LD	LUSC	TCGA-77-7140-01A	TMEM131	chr2	98504515	-	BAGE2	chr21	11058323	+
5CDS-5UTR	ENST00000425805	ENST00000470054		TCGA	LD	LUSC	TCGA-77-7140-01A	TMEM131	chr2	98504515	-	BAGE2	chr21	11058323	+
5UTR-5UTR	ENST00000589203	ENST00000568524		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5UTR-intron	ENST00000589203	ENST00000562818		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5UTR-intron	ENST00000589203	ENST00000566628		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5CDS-5UTR	ENST00000589498	ENST00000568524		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5CDS-intron	ENST00000589498	ENST00000562818		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5CDS-intron	ENST00000589498	ENST00000566628		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5CDS-5UTR	ENST00000590202	ENST00000568524		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5CDS-intron	ENST00000590202	ENST00000562818		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
5CDS-intron	ENST00000590202	ENST00000566628		TCGA	LD	LUSC	TCGA-77-7140-01A	ZNF519	chr18	14132274	-	C16orf97	chr16	52039546	-
intron-3CDS	ENST00000530124	ENST00000329251		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000530124	ENST00000378019		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-intron	ENST00000530124	ENST00000532986		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000257247	ENST00000329251		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000257247	ENST00000378019		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-intron	ENST00000257247	ENST00000532986		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000525875	ENST00000329251		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000525875	ENST00000378019		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-intron	ENST00000525875	ENST00000532986		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000378024	ENST00000329251		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-3CDS	ENST00000378024	ENST00000378019		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
intron-intron	ENST00000378024	ENST00000532986		TCGA	LD	LUSC	TCGA-77-7142-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62335000	-
5CDS-5UTR	ENST00000274695	ENST00000377136		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000274695	ENST00000377133		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000274695	ENST00000442615		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000377132		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000396792		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000473369		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000453467		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000454071		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000552011		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000440557		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000416582		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000493309		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000456657		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000436167		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000551060		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000440672		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000444920		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000487930		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000443407		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000412956		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000546418		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000421808		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000431658		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000492722		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000400694		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000400693		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000546570		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000383550		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000400689		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000490560		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000400714		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000400713		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000548244		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000383644		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000400712		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000461453		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000435958		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000458051		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000552129		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000415581		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000438840		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000494944		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000439879		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000449826		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000550783		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000446161		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000418376		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000274695	ENST00000498404		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000378624	ENST00000377136		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000378624	ENST00000377133		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000378624	ENST00000442615		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000377132		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000396792		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000473369		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000453467		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000454071		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000552011		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000440557		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000416582		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000493309		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000456657		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000436167		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000551060		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000440672		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000444920		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000487930		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000443407		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000412956		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000546418		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000421808		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000431658		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000492722		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000400694		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000400693		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000546570		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000383550		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000400689		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000490560		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000400714		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000400713		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000548244		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000383644		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000400712		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000461453		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000435958		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000458051		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000552129		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000415581		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000438840		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000494944		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000439879		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000449826		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000550783		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000446161		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000418376		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378624	ENST00000498404		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000378610	ENST00000377136		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000378610	ENST00000377133		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-5UTR	ENST00000378610	ENST00000442615		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000377132		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000396792		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000473369		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000453467		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000454071		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000552011		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000440557		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000416582		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000493309		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000456657		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000436167		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000551060		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000440672		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000444920		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000487930		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000443407		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000412956		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000546418		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000421808		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000431658		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000492722		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000400694		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000400693		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000546570		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000383550		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000400689		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000490560		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000400714		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000400713		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000548244		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000383644		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000400712		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000461453		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000435958		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000458051		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000552129		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000415581		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000438840		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000494944		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000439879		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000449826		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000550783		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000446161		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000418376		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
5CDS-intron	ENST00000378610	ENST00000498404		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-5UTR	ENST00000476517	ENST00000377136		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-5UTR	ENST00000476517	ENST00000377133		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-5UTR	ENST00000476517	ENST00000442615		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000377132		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000396792		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000473369		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000453467		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000454071		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000552011		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000440557		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000416582		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000493309		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000456657		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000436167		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000551060		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000440672		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000444920		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000487930		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000443407		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000412956		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000546418		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000421808		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000431658		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000492722		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000400694		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000400693		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000546570		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000383550		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000400689		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000490560		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000400714		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000400713		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000548244		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000383644		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000400712		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000461453		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000435958		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000458051		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000552129		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000415581		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000438840		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000494944		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000439879		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000449826		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000550783		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000446161		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000418376		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-intron	ENST00000476517	ENST00000498404		TCGA	LD	LUSC	TCGA-77-7142-01A	CDKAL1	chr6	20781496	+	OR2H1	chr6	29426231	+
intron-3CDS	ENST00000476258	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000476258	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000476258	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000476258	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000476258	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-5UTR	ENST00000476258	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000476258	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-3CDS	ENST00000405458	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000405458	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000405458	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000405458	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000405458	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-5UTR	ENST00000405458	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000405458	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
In-frame	ENST00000409753	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000409753	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000409753	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000409753	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000409753	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-5UTR	ENST00000409753	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000409753	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-3CDS	ENST00000482348	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000482348	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000482348	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000482348	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000482348	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-5UTR	ENST00000482348	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000482348	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
In-frame	ENST00000356033	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000356033	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000356033	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000356033	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000356033	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-5UTR	ENST00000356033	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000356033	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-3CDS	ENST00000470924	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000470924	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000470924	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000470924	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000470924	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-5UTR	ENST00000470924	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000470924	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-3CDS	ENST00000481647	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000481647	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000481647	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000481647	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000481647	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-5UTR	ENST00000481647	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
intron-intron	ENST00000481647	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-3CDS	ENST00000392566	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000392566	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000392566	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000392566	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000392566	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-5UTR	ENST00000392566	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000392566	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
In-frame	ENST00000581874	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000581874	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000581874	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000581874	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000581874	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-5UTR	ENST00000581874	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5CDS-intron	ENST00000581874	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-3CDS	ENST00000465454	ENST00000245544		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000465454	ENST00000541827		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000465454	ENST00000579324		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000465454	ENST00000449421		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000465454	ENST00000579298		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-5UTR	ENST00000465454	ENST00000447371		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-intron	ENST00000465454	ENST00000540768		TCGA	LD	LUSC	TCGA-77-7142-01A	HN1	chr17	73150437	-	NUP85	chr17	73204622	+
5UTR-5UTR	ENST00000381815	ENST00000468874		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
5UTR-intron	ENST00000381815	ENST00000542230		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-5UTR	ENST00000381831	ENST00000468874		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-intron	ENST00000381831	ENST00000542230		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-5UTR	ENST00000381839	ENST00000468874		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-intron	ENST00000381839	ENST00000542230		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-5UTR	ENST00000543717	ENST00000468874		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-intron	ENST00000543717	ENST00000542230		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
5UTR-5UTR	ENST00000361093	ENST00000468874		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
5UTR-intron	ENST00000361093	ENST00000542230		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-5UTR	ENST00000497313	ENST00000468874		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
intron-intron	ENST00000497313	ENST00000542230		TCGA	LD	LUSC	TCGA-77-7337-01A	GART	chr21	34914371	-	TMEM50B	chr21	34811604	-
Frame-shit	ENST00000307122	ENST00000368750		TCGA	LD	LUSC	TCGA-77-7337-01A	SPRR1A	chr1	152957927	+	SPRR2E	chr1	153066142	-
Frame-shit	ENST00000307122	ENST00000368751		TCGA	LD	LUSC	TCGA-77-7337-01A	SPRR1A	chr1	152957927	+	SPRR2E	chr1	153066142	-
In-frame	ENST00000368762	ENST00000368750		TCGA	LD	LUSC	TCGA-77-7337-01A	SPRR1A	chr1	152957927	+	SPRR2E	chr1	153066142	-
Frame-shit	ENST00000368762	ENST00000368751		TCGA	LD	LUSC	TCGA-77-7337-01A	SPRR1A	chr1	152957927	+	SPRR2E	chr1	153066142	-
In-frame	ENST00000215957	ENST00000412331		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
In-frame	ENST00000215957	ENST00000381683		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
In-frame	ENST00000215957	ENST00000406934		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
5CDS-3UTR	ENST00000215957	ENST00000476955		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
3UTR-3CDS	ENST00000402631	ENST00000412331		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
3UTR-3CDS	ENST00000402631	ENST00000381683		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
3UTR-3CDS	ENST00000402631	ENST00000406934		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
3UTR-3UTR	ENST00000402631	ENST00000476955		TCGA	LD	LUSC	TCGA-77-7338-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38266183	+
5CDS-5UTR	ENST00000401827	ENST00000276569		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000401827	ENST00000458464		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000401827	ENST00000523384		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000396642	ENST00000276569		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000396642	ENST00000458464		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000396642	ENST00000523384		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000379419	ENST00000276569		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000379419	ENST00000458464		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
5CDS-5UTR	ENST00000379419	ENST00000523384		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
intron-5UTR	ENST00000518667	ENST00000276569		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
intron-5UTR	ENST00000518667	ENST00000458464		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
intron-5UTR	ENST00000518667	ENST00000523384		TCGA	LD	LUSC	TCGA-77-7338-01A	PDE7A	chr8	66691955	-	ARMC1	chr8	66539668	-
intron-3CDS	ENST00000269489	ENST00000382771		TCGA	LD	LUSC	TCGA-77-7338-01A	SERPINB13	chr18	61262418	+	SERPINB5	chr18	61170563	+
intron-intron	ENST00000269489	ENST00000489441		TCGA	LD	LUSC	TCGA-77-7338-01A	SERPINB13	chr18	61262418	+	SERPINB5	chr18	61170563	+
intron-3UTR	ENST00000269489	ENST00000464346		TCGA	LD	LUSC	TCGA-77-7338-01A	SERPINB13	chr18	61262418	+	SERPINB5	chr18	61170563	+
Frame-shit	ENST00000344731	ENST00000382771		TCGA	LD	LUSC	TCGA-77-7338-01A	SERPINB13	chr18	61262418	+	SERPINB5	chr18	61170563	+
5CDS-intron	ENST00000344731	ENST00000489441		TCGA	LD	LUSC	TCGA-77-7338-01A	SERPINB13	chr18	61262418	+	SERPINB5	chr18	61170563	+
5CDS-3UTR	ENST00000344731	ENST00000464346		TCGA	LD	LUSC	TCGA-77-7338-01A	SERPINB13	chr18	61262418	+	SERPINB5	chr18	61170563	+
In-frame	ENST00000310926	ENST00000446041		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000310926	ENST00000393015		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000310926	ENST00000507429		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000310926	ENST00000324194		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000310926	ENST00000453248		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
In-frame	ENST00000493729	ENST00000446041		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000493729	ENST00000393015		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000493729	ENST00000507429		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000493729	ENST00000324194		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5CDS-intron	ENST00000493729	ENST00000453248		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5UTR-3CDS	ENST00000478651	ENST00000446041		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5UTR-intron	ENST00000478651	ENST00000393015		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5UTR-intron	ENST00000478651	ENST00000507429		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5UTR-intron	ENST00000478651	ENST00000324194		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
5UTR-intron	ENST00000478651	ENST00000453248		TCGA	LD	LUSC	TCGA-77-7338-01A	SLCO2A1	chr3	133692507	-	SLC25A36	chr3	140689769	+
In-frame	ENST00000359543	ENST00000254942		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
In-frame	ENST00000359543	ENST00000603068		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
5CDS-5UTR	ENST00000359543	ENST00000569611		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
5CDS-5UTR	ENST00000359543	ENST00000567296		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
intron-3CDS	ENST00000566033	ENST00000254942		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
intron-3CDS	ENST00000566033	ENST00000603068		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
intron-5UTR	ENST00000566033	ENST00000569611		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
intron-5UTR	ENST00000566033	ENST00000567296		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
In-frame	ENST00000536829	ENST00000254942		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
In-frame	ENST00000536829	ENST00000603068		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
5CDS-5UTR	ENST00000536829	ENST00000569611		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
5CDS-5UTR	ENST00000536829	ENST00000567296		TCGA	LD	LUSC	TCGA-77-7463-01A	EMP2	chr16	10637427	-	TERF2	chr16	69419389	-
5UTR-3CDS	ENST00000262051	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000262051	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-5UTR	ENST00000262051	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000547198	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000547198	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-5UTR	ENST00000547198	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000262052	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000262052	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-5UTR	ENST00000262052	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000394904	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000394904	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-5UTR	ENST00000394904	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000547688	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000547688	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-5UTR	ENST00000547688	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000541174	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000541174	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-5UTR	ENST00000541174	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000545993	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000545993	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-5UTR	ENST00000545993	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000546743	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-3CDS	ENST00000546743	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
5UTR-5UTR	ENST00000546743	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000549193	ENST00000536015		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-3CDS	ENST00000549193	ENST00000283684		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
intron-5UTR	ENST00000549193	ENST00000589147		TCGA	LD	LUSC	TCGA-77-8007-01A	SLC11A2	chr12	51420098	-	ATP8B1	chr18	55365099	-
Frame-shit	ENST00000370033	ENST00000439817		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
Frame-shit	ENST00000370033	ENST00000361464		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
5CDS-intron	ENST00000370033	ENST00000482611		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
5CDS-intron	ENST00000370033	ENST00000357797		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
5CDS-intron	ENST00000370033	ENST00000370094		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
5CDS-intron	ENST00000370033	ENST00000419011		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-3CDS	ENST00000311122	ENST00000439817		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-3CDS	ENST00000311122	ENST00000361464		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000311122	ENST00000482611		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000311122	ENST00000357797		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000311122	ENST00000370094		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000311122	ENST00000419011		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-3CDS	ENST00000495001	ENST00000439817		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-3CDS	ENST00000495001	ENST00000361464		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000495001	ENST00000482611		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000495001	ENST00000357797		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000495001	ENST00000370094		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
intron-intron	ENST00000495001	ENST00000419011		TCGA	LD	LUSC	TCGA-77-8009-01A	C10orf76	chr10	103716354	-	MGEA5	chr10	103563776	-
5CDS-5UTR	ENST00000295025	ENST00000494188		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000295025	ENST00000409892		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000295025	ENST00000409784		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000295025	ENST00000398529		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000295025	ENST00000409751		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000295025	ENST00000260638		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000295025	ENST00000356214		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000494188		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000409892		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000409784		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000398529		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000409751		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000260638		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
5CDS-5UTR	ENST00000394479	ENST00000356214		TCGA	LD	LUSC	TCGA-77-8009-01A	REL	chr2	61128218	+	RAB1A	chr2	65331940	-
Frame-shit	ENST00000522208	ENST00000382564		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
Frame-shit	ENST00000522208	ENST00000486355		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
5CDS-intron	ENST00000522208	ENST00000491873		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
5CDS-5UTR	ENST00000522208	ENST00000479269		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
Frame-shit	ENST00000521389	ENST00000382564		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
Frame-shit	ENST00000521389	ENST00000486355		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
5CDS-intron	ENST00000521389	ENST00000491873		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
5CDS-5UTR	ENST00000521389	ENST00000479269		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
Frame-shit	ENST00000261947	ENST00000382564		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
Frame-shit	ENST00000261947	ENST00000486355		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
5CDS-intron	ENST00000261947	ENST00000491873		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
5CDS-5UTR	ENST00000261947	ENST00000479269		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
intron-3CDS	ENST00000520564	ENST00000382564		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
intron-3CDS	ENST00000520564	ENST00000486355		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
intron-intron	ENST00000520564	ENST00000491873		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
intron-5UTR	ENST00000520564	ENST00000479269		TCGA	LD	LUSC	TCGA-77-8009-01A	RNF130	chr5	179467453	-	DNAJC19	chr3	180706017	-
Frame-shit	ENST00000277541	ENST00000284224		TCGA	LD	LUSC	TCGA-77-8130-01A	NOTCH1	chr9	139400979	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000277541	ENST00000581714		TCGA	LD	LUSC	TCGA-77-8130-01A	NOTCH1	chr9	139400979	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000277541	ENST00000580774		TCGA	LD	LUSC	TCGA-77-8130-01A	NOTCH1	chr9	139400979	-	CHST9	chr18	24524330	-
intron-3CDS	ENST00000491649	ENST00000284224		TCGA	LD	LUSC	TCGA-77-8130-01A	NOTCH1	chr9	139400979	-	CHST9	chr18	24524330	-
intron-3CDS	ENST00000491649	ENST00000581714		TCGA	LD	LUSC	TCGA-77-8130-01A	NOTCH1	chr9	139400979	-	CHST9	chr18	24524330	-
intron-intron	ENST00000491649	ENST00000580774		TCGA	LD	LUSC	TCGA-77-8130-01A	NOTCH1	chr9	139400979	-	CHST9	chr18	24524330	-
5UTR-5UTR	ENST00000565698	ENST00000279392		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
5UTR-intron	ENST00000565698	ENST00000564026		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
5UTR-5UTR	ENST00000565698	ENST00000566471		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
5CDS-5UTR	ENST00000304658	ENST00000279392		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
5CDS-intron	ENST00000304658	ENST00000564026		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
5CDS-5UTR	ENST00000304658	ENST00000566471		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
intron-5UTR	ENST00000561488	ENST00000279392		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
intron-intron	ENST00000561488	ENST00000564026		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
intron-5UTR	ENST00000561488	ENST00000566471		TCGA	LD	LUSC	TCGA-77-8130-01A	XPO6	chr16	28222687	-	HIRIP3	chr16	30007131	-
5CDS-5UTR	ENST00000502732	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000502732	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000502732	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000367623	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000367623	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000367623	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000507173	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000507173	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000507173	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000511413	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000511413	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000511413	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000392043	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000392043	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-intron	ENST00000392043	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000408940	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000408940	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000408940	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000344730	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000344730	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000344730	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000512653	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000512653	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000512653	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000504405	ENST00000367838		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000271357		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000367836		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000539777		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000537209		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000361697		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000546300		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-5UTR	ENST00000504405	ENST00000367835		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
intron-intron	ENST00000504405	ENST00000485232		TCGA	LD	LUSC	TCGA-77-8131-01A	ABL2	chr1	179198376	-	GPR161	chr1	168083787	-
5CDS-5UTR	ENST00000376177	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376177	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376177	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376177	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000376177	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000376177	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000396172	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000396172	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000396172	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000396172	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000396172	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000396172	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000417556	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000417556	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000417556	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000417556	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000417556	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000417556	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000458640	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000458640	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000458640	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000458640	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000458640	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000458640	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000462421	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000462421	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000462421	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000462421	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000462421	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000462421	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000415382	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000415382	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000415382	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000415382	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000415382	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000415382	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453105	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453105	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453105	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453105	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453105	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453105	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449074	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449074	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449074	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449074	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449074	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000449074	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552820	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552820	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552820	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552820	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552820	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552820	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000463430	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000463430	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000463430	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000463430	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000463430	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000463430	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438578	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438578	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438578	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438578	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438578	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000438578	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415689	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415689	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415689	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415689	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415689	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000415689	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456476	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456476	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456476	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456476	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456476	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456476	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412106	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412106	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412106	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412106	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412106	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412106	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547039	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547039	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547039	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547039	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547039	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547039	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550435	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550435	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550435	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550435	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550435	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550435	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453488	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453488	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453488	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453488	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453488	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453488	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453138	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453138	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453138	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453138	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000453138	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000453138	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552288	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552288	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552288	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552288	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552288	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000552288	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000441425	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000441425	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000441425	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000441425	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000441425	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000441425	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456666	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456666	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456666	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456666	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000456666	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000456666	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546633	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546633	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546633	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546633	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546633	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546633	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000483957	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000483957	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000483957	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000483957	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000483957	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000483957	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430703	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430703	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430703	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430703	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430703	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430703	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416863	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416863	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416863	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416863	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000416863	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000416863	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000413678	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000413678	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000413678	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000413678	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000413678	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000413678	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414440	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414440	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414440	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414440	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414440	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000414440	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547489	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547489	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547489	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547489	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547489	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000547489	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551031	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551031	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551031	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551031	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000551031	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000551031	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468089	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468089	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468089	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468089	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468089	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000468089	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400293	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400293	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400293	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400293	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400293	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400293	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400296	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400296	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400296	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400296	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400296	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400296	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400295	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400295	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400295	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400295	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400295	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000400295	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383508	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383508	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383508	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383508	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000383508	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000383508	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548340	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548340	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548340	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548340	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548340	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548340	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548331	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548331	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548331	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548331	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548331	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548331	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000495391	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000495391	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000495391	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000495391	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000495391	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000495391	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446341	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446341	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446341	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446341	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446341	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000446341	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548614	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548614	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548614	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548614	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000548614	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000548614	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000448296	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000448296	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000448296	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000448296	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000448296	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000448296	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412330	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412330	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412330	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412330	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000412330	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000412330	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000445218	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000445218	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000445218	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000445218	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000445218	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000445218	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546637	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546637	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546637	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546637	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546637	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000546637	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000489325	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000489325	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000489325	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000489325	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000489325	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000489325	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000450987	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000450987	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000450987	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000450987	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000450987	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000450987	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000431360	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000431360	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000431360	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000431360	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000431360	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000431360	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430784	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430784	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430784	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430784	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000430784	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000430784	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550217	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550217	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550217	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550217	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000550217	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000550217	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470514	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470514	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470514	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470514	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000470514	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000470514	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549374	ENST00000491161		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549374	ENST00000376073		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549374	ENST00000340027		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549374	ENST00000376072		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-5UTR	ENST00000549374	ENST00000376071		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000497117		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000420556		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000432392		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000457547		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000419728		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000498490		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000433654		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000447248		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000418936		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000420485		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000491762		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000439584		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000415123		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000436623		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000455448		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000459657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000455825		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000435674		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000412603		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000438663		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000495500		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000383478		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000383477		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000383476		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000400241		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000494590		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000430599		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000446756		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000441372		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000453657		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000489751		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000437517		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000436253		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000452296		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
intron-intron	ENST00000549374	ENST00000419086		TCGA	LD	LUSC	TCGA-77-8136-01A	DDX39B	chr6	31503144	-	NCR3	chr6	31557676	-
5CDS-intron	ENST00000530927	ENST00000605917		TCGA	LD	LUSC	TCGA-77-8136-01A	GMDS	chr6	1930337	-	CASC15	chr6	22174227	+
5CDS-intron	ENST00000380815	ENST00000605917		TCGA	LD	LUSC	TCGA-77-8136-01A	GMDS	chr6	1930337	-	CASC15	chr6	22174227	+
intron-intron	ENST00000467288	ENST00000605917		TCGA	LD	LUSC	TCGA-77-8136-01A	GMDS	chr6	1930337	-	CASC15	chr6	22174227	+
intron-intron	ENST00000377604	ENST00000495165		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000377604	ENST00000308284		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000377604	ENST00000464631		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-intron	ENST00000329236	ENST00000495165		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000329236	ENST00000308284		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000329236	ENST00000464631		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-intron	ENST00000345781	ENST00000495165		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000345781	ENST00000308284		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000345781	ENST00000464631		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-intron	ENST00000478410	ENST00000495165		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000478410	ENST00000308284		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
intron-5UTR	ENST00000478410	ENST00000464631		TCGA	LD	LUSC	TCGA-77-8136-01A	RBM10	chrX	47004915	+	SEC16B	chr1	177937174	-
Frame-shit	ENST00000262370	ENST00000444310		TCGA	LD	LUSC	TCGA-77-8140-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000415496	ENST00000444310		TCGA	LD	LUSC	TCGA-77-8140-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000399577	ENST00000444310		TCGA	LD	LUSC	TCGA-77-8140-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000588994	ENST00000444310		TCGA	LD	LUSC	TCGA-77-8140-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000586183	ENST00000444310		TCGA	LD	LUSC	TCGA-77-8140-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
intron-3CDS	ENST00000588015	ENST00000444310		TCGA	LD	LUSC	TCGA-77-8140-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
5UTR-5UTR	ENST00000360149	ENST00000361317		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
5UTR-intron	ENST00000360149	ENST00000343484		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
5UTR-intron	ENST00000360149	ENST00000395053		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
5UTR-intron	ENST00000360149	ENST00000465111		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-5UTR	ENST00000536311	ENST00000361317		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-intron	ENST00000536311	ENST00000343484		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-intron	ENST00000536311	ENST00000395053		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-intron	ENST00000536311	ENST00000465111		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-5UTR	ENST00000328439	ENST00000361317		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-intron	ENST00000328439	ENST00000343484		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-intron	ENST00000328439	ENST00000395053		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
intron-intron	ENST00000328439	ENST00000465111		TCGA	LD	LUSC	TCGA-77-8140-01A	MYT1	chr20	62783263	+	TCEA2	chr20	62693783	+
In-frame	ENST00000356663	ENST00000361757		TCGA	LD	LUSC	TCGA-77-8140-01A	TMEM259	chr19	1020771	-	SBNO2	chr19	1127764	-
In-frame	ENST00000356663	ENST00000587024		TCGA	LD	LUSC	TCGA-77-8140-01A	TMEM259	chr19	1020771	-	SBNO2	chr19	1127764	-
In-frame	ENST00000356663	ENST00000438103		TCGA	LD	LUSC	TCGA-77-8140-01A	TMEM259	chr19	1020771	-	SBNO2	chr19	1127764	-
In-frame	ENST00000333175	ENST00000361757		TCGA	LD	LUSC	TCGA-77-8140-01A	TMEM259	chr19	1020771	-	SBNO2	chr19	1127764	-
In-frame	ENST00000333175	ENST00000587024		TCGA	LD	LUSC	TCGA-77-8140-01A	TMEM259	chr19	1020771	-	SBNO2	chr19	1127764	-
In-frame	ENST00000333175	ENST00000438103		TCGA	LD	LUSC	TCGA-77-8140-01A	TMEM259	chr19	1020771	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000316763	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000316763	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000316763	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000316763	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000316763	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000316763	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000316763	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000377011	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000377011	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000377011	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000377011	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000377011	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000377011	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000377011	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000599538	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000599538	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000599538	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000599538	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000599538	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000599538	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000599538	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000443401	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000443401	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000443401	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000443401	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000443401	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000443401	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000443401	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000601341	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000601341	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000601341	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601341	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601341	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601341	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601341	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000594948	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000594948	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000594948	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594948	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594948	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594948	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594948	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000601912	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000601912	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000601912	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601912	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601912	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601912	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000601912	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000594092	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000594092	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000594092	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594092	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594092	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594092	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000594092	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000593919	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000593919	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000593919	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000593919	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000593919	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000593919	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000593919	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000424804	ENST00000600603		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000424804	ENST00000601638		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3CDS	ENST00000424804	ENST00000221557		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000424804	ENST00000598325		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000424804	ENST00000391842		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000424804	ENST00000599732		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
intron-3UTR	ENST00000424804	ENST00000601675		TCGA	LD	LUSC	TCGA-77-8140-01A	VRK3	chr19	50501934	-	PTOV1	chr19	50361000	+
In-frame	ENST00000372771	ENST00000372797		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
In-frame	ENST00000372771	ENST00000372802		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
In-frame	ENST00000372771	ENST00000372792		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
In-frame	ENST00000372771	ENST00000372798		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
In-frame	ENST00000372771	ENST00000340450		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
In-frame	ENST00000372771	ENST00000372805		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
5CDS-intron	ENST00000372771	ENST00000479759		TCGA	LD	LUSC	TCGA-77-8148-01A	RLF	chr1	40668286	+	CAP1	chr1	40529899	+
In-frame	ENST00000325954	ENST00000257570		TCGA	LD	LUSC	TCGA-77-8148-01A	RNF10	chr12	120990501	+	OASL	chr12	121458589	-
5CDS-3UTR	ENST00000325954	ENST00000339275		TCGA	LD	LUSC	TCGA-77-8148-01A	RNF10	chr12	120990501	+	OASL	chr12	121458589	-
In-frame	ENST00000413266	ENST00000257570		TCGA	LD	LUSC	TCGA-77-8148-01A	RNF10	chr12	120990501	+	OASL	chr12	121458589	-
5CDS-3UTR	ENST00000413266	ENST00000339275		TCGA	LD	LUSC	TCGA-77-8148-01A	RNF10	chr12	120990501	+	OASL	chr12	121458589	-
intron-3CDS	ENST00000542701	ENST00000257570		TCGA	LD	LUSC	TCGA-77-8148-01A	RNF10	chr12	120990501	+	OASL	chr12	121458589	-
intron-3UTR	ENST00000542701	ENST00000339275		TCGA	LD	LUSC	TCGA-77-8148-01A	RNF10	chr12	120990501	+	OASL	chr12	121458589	-
5CDS-intron	ENST00000358794	ENST00000393958		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-5UTR	ENST00000358794	ENST00000393960		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000358794	ENST00000355677		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000358794	ENST00000524491		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000358794	ENST00000529047		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000358794	ENST00000393955		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000358794	ENST00000528224		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000305218	ENST00000393958		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-5UTR	ENST00000305218	ENST00000393960		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000305218	ENST00000355677		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000305218	ENST00000524491		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000305218	ENST00000529047		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000305218	ENST00000393955		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000305218	ENST00000528224		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000538945	ENST00000393958		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-5UTR	ENST00000538945	ENST00000393960		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000538945	ENST00000355677		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000538945	ENST00000524491		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000538945	ENST00000529047		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000538945	ENST00000393955		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5CDS-intron	ENST00000538945	ENST00000528224		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000543847	ENST00000393958		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-5UTR	ENST00000543847	ENST00000393960		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000543847	ENST00000355677		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000543847	ENST00000524491		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000543847	ENST00000529047		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000543847	ENST00000393955		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000543847	ENST00000528224		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000540501	ENST00000393958		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-5UTR	ENST00000540501	ENST00000393960		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000540501	ENST00000355677		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000540501	ENST00000524491		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000540501	ENST00000529047		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000540501	ENST00000393955		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
intron-intron	ENST00000540501	ENST00000528224		TCGA	LD	LUSC	TCGA-77-8148-01A	STIP1	chr11	63967765	+	PC	chr11	66721907	-
5UTR-3CDS	ENST00000373840	ENST00000223642		TCGA	LD	LUSC	TCGA-77-8150-01A	RAB14	chr9	123963917	-	C5	chr9	123753558	-
5UTR-intron	ENST00000373840	ENST00000466280		TCGA	LD	LUSC	TCGA-77-8150-01A	RAB14	chr9	123963917	-	C5	chr9	123753558	-
In-frame	ENST00000394818	ENST00000533244		TCGA	LD	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908516	+	CCS	chr11	66372810	+
In-frame	ENST00000394818	ENST00000310190		TCGA	LD	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908516	+	CCS	chr11	66372810	+
In-frame	ENST00000278849	ENST00000533244		TCGA	LD	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908516	+	CCS	chr11	66372810	+
In-frame	ENST00000278849	ENST00000310190		TCGA	LD	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908516	+	CCS	chr11	66372810	+
intron-3CDS	ENST00000531099	ENST00000533244		TCGA	LD	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908516	+	CCS	chr11	66372810	+
intron-3CDS	ENST00000531099	ENST00000310190		TCGA	LD	LUSC	TCGA-77-8153-01A	INCENP	chr11	61908516	+	CCS	chr11	66372810	+
5CDS-intron	ENST00000367350	ENST00000447706		TCGA	LD	LUSC	TCGA-77-8153-01A	KIF14	chr1	200584483	-	DDX59	chr1	200613645	-
5CDS-intron	ENST00000367350	ENST00000367348		TCGA	LD	LUSC	TCGA-77-8153-01A	KIF14	chr1	200584483	-	DDX59	chr1	200613645	-
5CDS-intron	ENST00000367350	ENST00000331314		TCGA	LD	LUSC	TCGA-77-8153-01A	KIF14	chr1	200584483	-	DDX59	chr1	200613645	-
In-frame	ENST00000274137	ENST00000313164		TCGA	LD	LUSC	TCGA-77-8153-01A	NDUFS6	chr5	1802488	+	C7	chr5	40928682	+
5CDS-intron	ENST00000274137	ENST00000494960		TCGA	LD	LUSC	TCGA-77-8153-01A	NDUFS6	chr5	1802488	+	C7	chr5	40928682	+
In-frame	ENST00000469176	ENST00000313164		TCGA	LD	LUSC	TCGA-77-8153-01A	NDUFS6	chr5	1802488	+	C7	chr5	40928682	+
5CDS-intron	ENST00000469176	ENST00000494960		TCGA	LD	LUSC	TCGA-77-8153-01A	NDUFS6	chr5	1802488	+	C7	chr5	40928682	+
intron-3CDS	ENST00000510329	ENST00000313164		TCGA	LD	LUSC	TCGA-77-8153-01A	NDUFS6	chr5	1802488	+	C7	chr5	40928682	+
intron-intron	ENST00000510329	ENST00000494960		TCGA	LD	LUSC	TCGA-77-8153-01A	NDUFS6	chr5	1802488	+	C7	chr5	40928682	+
5UTR-5UTR	ENST00000378609	ENST00000341426		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000341991		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000378625		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000344463		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000492768		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000378609	ENST00000342348		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341426		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341991		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000378625		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000344463		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000492768		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000472614	ENST00000342348		TCGA	LD	LUSC	TCGA-77-8154-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
intron-3CDS	ENST00000380412	ENST00000395461		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-3CDS	ENST00000380412	ENST00000564277		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000380412	ENST00000563964		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000380412	ENST00000395456		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000380412	ENST00000454369		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000380412	ENST00000360872		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000380412	ENST00000354453		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000380412	ENST00000566177		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-3CDS	ENST00000562803	ENST00000395461		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-3CDS	ENST00000562803	ENST00000564277		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000562803	ENST00000563964		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000562803	ENST00000395456		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000562803	ENST00000454369		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000562803	ENST00000360872		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000562803	ENST00000354453		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
intron-intron	ENST00000562803	ENST00000566177		TCGA	LD	LUSC	TCGA-77-8154-01A	ZNF768	chr16	30536326	-	LAT	chr16	29000848	+
5CDS-5UTR	ENST00000373731	ENST00000312917		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5CDS-5UTR	ENST00000373731	ENST00000388715		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5CDS-5UTR	ENST00000373731	ENST00000394571		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
intron-5UTR	ENST00000474988	ENST00000312917		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
intron-5UTR	ENST00000474988	ENST00000388715		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
intron-5UTR	ENST00000474988	ENST00000394571		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5UTR-5UTR	ENST00000544295	ENST00000312917		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5UTR-5UTR	ENST00000544295	ENST00000388715		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5UTR-5UTR	ENST00000544295	ENST00000394571		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5CDS-5UTR	ENST00000449081	ENST00000312917		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5CDS-5UTR	ENST00000449081	ENST00000388715		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5CDS-5UTR	ENST00000449081	ENST00000394571		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5UTR-5UTR	ENST00000536244	ENST00000312917		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5UTR-5UTR	ENST00000536244	ENST00000388715		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
5UTR-5UTR	ENST00000536244	ENST00000394571		TCGA	LD	LUSC	TCGA-77-8156-01A	KCTD20	chr6	36438034	+	PNPLA1	chr6	36259097	+
intron-3CDS	ENST00000239231	ENST00000461719		TCGA	LD	LUSC	TCGA-77-A5FZ-01A	PANK3	chr5	167979540	-	IGHJ4	chr14	106330461	-
intron-3CDS	ENST00000520504	ENST00000461719		TCGA	LD	LUSC	TCGA-77-A5FZ-01A	PANK3	chr5	167979540	-	IGHJ4	chr14	106330461	-
Frame-shit	ENST00000377669	ENST00000406936		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
Frame-shit	ENST00000377669	ENST00000377615		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377669	ENST00000377619		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377669	ENST00000355801		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377669	ENST00000460675		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
Frame-shit	ENST00000377666	ENST00000406936		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
Frame-shit	ENST00000377666	ENST00000377615		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377666	ENST00000377619		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377666	ENST00000355801		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000377666	ENST00000460675		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5UTR-3CDS	ENST00000472022	ENST00000406936		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5UTR-3CDS	ENST00000472022	ENST00000377615		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5UTR-intron	ENST00000472022	ENST00000377619		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5UTR-intron	ENST00000472022	ENST00000355801		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5UTR-intron	ENST00000472022	ENST00000460675		TCGA	LD	LUSC	TCGA-77-A5G3-01A	KLF12	chr13	74419964	-	COMMD6	chr13	76111811	-
5CDS-intron	ENST00000343245	ENST00000374791		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000343245	ENST00000539799		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000343245	ENST00000427481		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000343245	ENST00000374786		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000343245	ENST00000425719		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000343245	ENST00000374784		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000343245	ENST00000474900		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000374791		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000539799		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000427481		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000374786		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000425719		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000374784		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369070	ENST00000474900		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000374791		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000539799		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000427481		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000374786		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000425719		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000374784		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000369076	ENST00000474900		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000374791		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000539799		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000427481		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000374786		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000425719		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000374784		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-intron	ENST00000360666	ENST00000474900		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000374791		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000539799		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000427481		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000374786		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000425719		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000374784		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
intron-intron	ENST00000475645	ENST00000474900		TCGA	LD	LUSC	TCGA-77-A5G6-01A	ATG5	chr6	106696025	-	NTM	chr11	131530823	+
5CDS-5UTR	ENST00000356940	ENST00000462705		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-intron	ENST00000356940	ENST00000393785		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-intron	ENST00000356940	ENST00000481632		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000356940	ENST00000471418		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000356940	ENST00000357258		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000356940	ENST00000464560		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000356940	ENST00000488663		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-intron	ENST00000356940	ENST00000474710		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000535776	ENST00000462705		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-intron	ENST00000535776	ENST00000393785		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-intron	ENST00000535776	ENST00000481632		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000535776	ENST00000471418		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000535776	ENST00000357258		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000535776	ENST00000464560		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-5UTR	ENST00000535776	ENST00000488663		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
5CDS-intron	ENST00000535776	ENST00000474710		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-5UTR	ENST00000375802	ENST00000462705		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-intron	ENST00000375802	ENST00000393785		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-intron	ENST00000375802	ENST00000481632		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-5UTR	ENST00000375802	ENST00000471418		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-5UTR	ENST00000375802	ENST00000357258		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-5UTR	ENST00000375802	ENST00000464560		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-5UTR	ENST00000375802	ENST00000488663		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
intron-intron	ENST00000375802	ENST00000474710		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-5UTR	ENST00000465772	ENST00000462705		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-intron	ENST00000465772	ENST00000393785		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-intron	ENST00000465772	ENST00000481632		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-5UTR	ENST00000465772	ENST00000471418		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-5UTR	ENST00000465772	ENST00000357258		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-5UTR	ENST00000465772	ENST00000464560		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-5UTR	ENST00000465772	ENST00000488663		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
3UTR-intron	ENST00000465772	ENST00000474710		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAB18	chr10	27815818	+	ZBTB20	chr3	114412422	-
In-frame	ENST00000487861	ENST00000440884		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487861	ENST00000416682		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487861	ENST00000429436		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487861	ENST00000303622		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487861	ENST00000216288		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487861	ENST00000553942		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487861	ENST00000335102		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
5CDS-intron	ENST00000487861	ENST00000561071		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000440884		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000416682		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000429436		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000303622		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000216288		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000553942		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000471583	ENST00000335102		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
5CDS-intron	ENST00000471583	ENST00000561071		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000440884		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000416682		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000429436		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000303622		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000216288		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000553942		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000487270	ENST00000335102		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
5CDS-intron	ENST00000487270	ENST00000561071		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000440884		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000416682		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000429436		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000303622		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000216288		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000553942		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000488612	ENST00000335102		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
5CDS-intron	ENST00000488612	ENST00000561071		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000440884		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000416682		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000429436		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000303622		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000216288		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000553942		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000390683	ENST00000335102		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
5CDS-intron	ENST00000390683	ENST00000561071		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000440884		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000416682		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000429436		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000303622		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000216288		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000553942		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-3CDS	ENST00000469165	ENST00000335102		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
3UTR-intron	ENST00000469165	ENST00000561071		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RAD51B	chr14	68353921	+	MARK3	chr14	103946724	+
In-frame	ENST00000539449	ENST00000369046		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000539449	ENST00000467262		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000539449	ENST00000369044		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
In-frame	ENST00000369063	ENST00000369046		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000369063	ENST00000467262		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000369063	ENST00000369044		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
intron-3CDS	ENST00000498091	ENST00000369046		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
intron-3UTR	ENST00000498091	ENST00000467262		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
intron-3UTR	ENST00000498091	ENST00000369044		TCGA	LD	LUSC	TCGA-77-A5G6-01A	RTN4IP1	chr6	107076623	-	QRSL1	chr6	107088224	+
Frame-shit	ENST00000303052	ENST00000300026		TCGA	LD	LUSC	TCGA-77-A5G7-01B	CSNK1G1	chr15	64592518	-	PPIB	chr15	64449108	-
5CDS-5UTR	ENST00000303052	ENST00000558492		TCGA	LD	LUSC	TCGA-77-A5G7-01B	CSNK1G1	chr15	64592518	-	PPIB	chr15	64449108	-
Frame-shit	ENST00000607537	ENST00000300026		TCGA	LD	LUSC	TCGA-77-A5G7-01B	CSNK1G1	chr15	64592518	-	PPIB	chr15	64449108	-
5CDS-5UTR	ENST00000607537	ENST00000558492		TCGA	LD	LUSC	TCGA-77-A5G7-01B	CSNK1G1	chr15	64592518	-	PPIB	chr15	64449108	-
Frame-shit	ENST00000303032	ENST00000300026		TCGA	LD	LUSC	TCGA-77-A5G7-01B	CSNK1G1	chr15	64592518	-	PPIB	chr15	64449108	-
5CDS-5UTR	ENST00000303032	ENST00000558492		TCGA	LD	LUSC	TCGA-77-A5G7-01B	CSNK1G1	chr15	64592518	-	PPIB	chr15	64449108	-
Frame-shit	ENST00000284136	ENST00000399881		TCGA	LD	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84751057	-	KCNU1	chr8	36721922	+
5CDS-intron	ENST00000284136	ENST00000518904		TCGA	LD	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84751057	-	KCNU1	chr8	36721922	+
In-frame	ENST00000444867	ENST00000399881		TCGA	LD	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84751057	-	KCNU1	chr8	36721922	+
5CDS-intron	ENST00000444867	ENST00000518904		TCGA	LD	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84751057	-	KCNU1	chr8	36721922	+
intron-3CDS	ENST00000484038	ENST00000399881		TCGA	LD	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84751057	-	KCNU1	chr8	36721922	+
intron-intron	ENST00000484038	ENST00000518904		TCGA	LD	LUSC	TCGA-77-A5G7-01B	SEMA3D	chr7	84751057	-	KCNU1	chr8	36721922	+
5CDS-3UTR	ENST00000373344	ENST00000610214		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
5CDS-intron	ENST00000373344	ENST00000435339		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
5CDS-3UTR	ENST00000395603	ENST00000610214		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
5CDS-intron	ENST00000395603	ENST00000435339		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
5UTR-3UTR	ENST00000480283	ENST00000610214		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
5UTR-intron	ENST00000480283	ENST00000435339		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
intron-3UTR	ENST00000373341	ENST00000610214		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
intron-intron	ENST00000373341	ENST00000435339		TCGA	LD	LUSC	TCGA-77-A5GH-01A	ATRX	chrX	77041468	-	LPAR4	chrX	78006707	+
5CDS-intron	ENST00000302550	ENST00000473875		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000302550	ENST00000366534		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000302550	ENST00000366533		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
5CDS-intron	ENST00000302550	ENST00000366531		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000263831	ENST00000473875		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000263831	ENST00000366534		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000263831	ENST00000366533		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000263831	ENST00000366531		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000484738	ENST00000473875		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000484738	ENST00000366534		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000484738	ENST00000366533		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
intron-intron	ENST00000484738	ENST00000366531		TCGA	LD	LUSC	TCGA-77-A5GH-01A	DESI2	chr1	244852644	+	C1orf101	chr1	244798791	+
Frame-shit	ENST00000418930	ENST00000360375		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
Frame-shit	ENST00000418930	ENST00000414626		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
Frame-shit	ENST00000256117	ENST00000360375		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
Frame-shit	ENST00000256117	ENST00000414626		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
Frame-shit	ENST00000416274	ENST00000360375		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
Frame-shit	ENST00000416274	ENST00000414626		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
3UTR-3CDS	ENST00000519128	ENST00000360375		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
3UTR-3CDS	ENST00000519128	ENST00000414626		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
intron-3CDS	ENST00000517476	ENST00000360375		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
intron-3CDS	ENST00000517476	ENST00000414626		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
intron-3CDS	ENST00000521429	ENST00000360375		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
intron-3CDS	ENST00000521429	ENST00000414626		TCGA	LD	LUSC	TCGA-77-A5GH-01A	E2F5	chr8	86089889	+	LRRCC1	chr8	86021830	+
Frame-shit	ENST00000574590	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000574590	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000574590	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000574590	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000574590	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000574590	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
Frame-shit	ENST00000575318	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000575318	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000575318	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000575318	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000575318	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000575318	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
In-frame	ENST00000572904	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000572904	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000572904	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000572904	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000572904	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000572904	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
Frame-shit	ENST00000262419	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000262419	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000262419	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000262419	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000262419	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000262419	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
Frame-shit	ENST00000432791	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000432791	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000432791	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000432791	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000432791	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5CDS-intron	ENST00000432791	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5UTR-3CDS	ENST00000393476	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5UTR-intron	ENST00000393476	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5UTR-intron	ENST00000393476	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5UTR-intron	ENST00000393476	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5UTR-intron	ENST00000393476	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
5UTR-intron	ENST00000393476	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
intron-3CDS	ENST00000576248	ENST00000406610		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
intron-intron	ENST00000576248	ENST00000462231		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
intron-intron	ENST00000576248	ENST00000349953		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
intron-intron	ENST00000576248	ENST00000358768		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
intron-intron	ENST00000576248	ENST00000351153		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
intron-intron	ENST00000576248	ENST00000488622		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KANSL1	chr17	44159807	-	PARD3B	chr2	206265737	+
In-frame	ENST00000299505	ENST00000582783		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KIAA0355	chr19	34791873	+	C19orf47	chr19	40847797	-
5CDS-5UTR	ENST00000299505	ENST00000392035		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KIAA0355	chr19	34791873	+	C19orf47	chr19	40847797	-
5CDS-intron	ENST00000299505	ENST00000584868		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KIAA0355	chr19	34791873	+	C19orf47	chr19	40847797	-
intron-3CDS	ENST00000592124	ENST00000582783		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KIAA0355	chr19	34791873	+	C19orf47	chr19	40847797	-
intron-5UTR	ENST00000592124	ENST00000392035		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KIAA0355	chr19	34791873	+	C19orf47	chr19	40847797	-
intron-intron	ENST00000592124	ENST00000584868		TCGA	LD	LUSC	TCGA-77-A5GH-01A	KIAA0355	chr19	34791873	+	C19orf47	chr19	40847797	-
Frame-shit	ENST00000250894	ENST00000253934		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MAPK8IP3	chr16	1779579	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000250894	ENST00000566264		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MAPK8IP3	chr16	1779579	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000356010	ENST00000253934		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MAPK8IP3	chr16	1779579	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000356010	ENST00000566264		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MAPK8IP3	chr16	1779579	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000568271	ENST00000253934		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MAPK8IP3	chr16	1779579	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000568271	ENST00000566264		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MAPK8IP3	chr16	1779579	+	TMEM204	chr16	1604783	+
5UTR-3CDS	ENST00000341184	ENST00000318801		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MGAT3	chr22	39853562	+	SYNGR1	chr22	39770321	+
5UTR-3CDS	ENST00000341184	ENST00000216155		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MGAT3	chr22	39853562	+	SYNGR1	chr22	39770321	+
5UTR-3CDS	ENST00000341184	ENST00000406293		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MGAT3	chr22	39853562	+	SYNGR1	chr22	39770321	+
5UTR-3CDS	ENST00000341184	ENST00000328933		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MGAT3	chr22	39853562	+	SYNGR1	chr22	39770321	+
5UTR-3CDS	ENST00000341184	ENST00000381535		TCGA	LD	LUSC	TCGA-77-A5GH-01A	MGAT3	chr22	39853562	+	SYNGR1	chr22	39770321	+
5CDS-5UTR	ENST00000372469	ENST00000372486		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
5CDS-5UTR	ENST00000372469	ENST00000372483		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
5CDS-5UTR	ENST00000372469	ENST00000459968		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
5CDS-intron	ENST00000372469	ENST00000482347		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
5CDS-5UTR	ENST00000372469	ENST00000372481		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
5CDS-5UTR	ENST00000372469	ENST00000372480		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
5CDS-3UTR	ENST00000372469	ENST00000486391		TCGA	LD	LUSC	TCGA-77-A5GH-01A	PRRX2	chr9	132428405	+	NTMT1	chr9	132394929	+
Frame-shit	ENST00000335459	ENST00000263856		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000335459	ENST00000409727		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000335459	ENST00000409225		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000335459	ENST00000439940		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5CDS-5UTR	ENST00000335459	ENST00000494623		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000409520	ENST00000263856		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000409520	ENST00000409727		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000409520	ENST00000409225		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000409520	ENST00000439940		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5CDS-5UTR	ENST00000409520	ENST00000494623		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
intron-3CDS	ENST00000409133	ENST00000263856		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
intron-3CDS	ENST00000409133	ENST00000409727		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
intron-3CDS	ENST00000409133	ENST00000409225		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
intron-3CDS	ENST00000409133	ENST00000439940		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
intron-5UTR	ENST00000409133	ENST00000494623		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5UTR-3CDS	ENST00000479944	ENST00000263856		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5UTR-3CDS	ENST00000479944	ENST00000409727		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5UTR-3CDS	ENST00000479944	ENST00000409225		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5UTR-3CDS	ENST00000479944	ENST00000439940		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
5UTR-5UTR	ENST00000479944	ENST00000494623		TCGA	LD	LUSC	TCGA-77-A5GH-01A	TRABD2A	chr2	85059179	-	CHMP3	chr2	86734716	-
Frame-shit	ENST00000396556	ENST00000283629		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
Frame-shit	ENST00000396556	ENST00000447368		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
Frame-shit	ENST00000396556	ENST00000283628		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
5CDS-intron	ENST00000396556	ENST00000486388		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
Frame-shit	ENST00000438237	ENST00000283629		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
Frame-shit	ENST00000438237	ENST00000447368		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
Frame-shit	ENST00000438237	ENST00000283628		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
5CDS-intron	ENST00000438237	ENST00000486388		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
intron-3CDS	ENST00000467647	ENST00000283629		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
intron-3CDS	ENST00000467647	ENST00000447368		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
intron-3CDS	ENST00000467647	ENST00000283628		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
intron-intron	ENST00000467647	ENST00000486388		TCGA	LD	LUSC	TCGA-79-5596-01A	OSBPL10	chr3	32022391	-	UBP1	chr3	33467233	-
In-frame	ENST00000272227	ENST00000434748		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
In-frame	ENST00000272227	ENST00000261673		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
5CDS-intron	ENST00000272227	ENST00000542061		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
In-frame	ENST00000404371	ENST00000434748		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
In-frame	ENST00000404371	ENST00000261673		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
5CDS-intron	ENST00000404371	ENST00000542061		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
In-frame	ENST00000404824	ENST00000434748		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
In-frame	ENST00000404824	ENST00000261673		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
5CDS-intron	ENST00000404824	ENST00000542061		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
Frame-shit	ENST00000540494	ENST00000434748		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
Frame-shit	ENST00000540494	ENST00000261673		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
5CDS-intron	ENST00000540494	ENST00000542061		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
Frame-shit	ENST00000381611	ENST00000434748		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
Frame-shit	ENST00000381611	ENST00000261673		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
5CDS-intron	ENST00000381611	ENST00000542061		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
intron-3CDS	ENST00000489662	ENST00000434748		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
intron-3CDS	ENST00000489662	ENST00000261673		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
intron-intron	ENST00000489662	ENST00000542061		TCGA	LD	LUSC	TCGA-79-5596-01A	PDIA6	chr2	10933222	-	FBRSL1	chr12	133102320	+
5CDS-5UTR	ENST00000334121	ENST00000169298		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000334121	ENST00000457772		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000334121	ENST00000448044		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5CDS-intron	ENST00000334121	ENST00000487031		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000380918	ENST00000169298		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000380918	ENST00000457772		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000380918	ENST00000448044		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
5UTR-intron	ENST00000380918	ENST00000487031		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
intron-5UTR	ENST00000284041	ENST00000169298		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
intron-5UTR	ENST00000284041	ENST00000457772		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
intron-5UTR	ENST00000284041	ENST00000448044		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
intron-intron	ENST00000284041	ENST00000487031		TCGA	LD	LUSC	TCGA-79-5596-01A	SREK1	chr5	65449424	+	ST6GAL1	chr3	186756530	+
Frame-shit	ENST00000331483	ENST00000297268		TCGA	LD	LUSC	TCGA-85-6175-01A	P4HB	chr17	79803747	-	COL1A2	chr7	94040368	+
intron-3CDS	ENST00000576390	ENST00000297268		TCGA	LD	LUSC	TCGA-85-6175-01A	P4HB	chr17	79803747	-	COL1A2	chr7	94040368	+
Frame-shit	ENST00000439918	ENST00000297268		TCGA	LD	LUSC	TCGA-85-6175-01A	P4HB	chr17	79803747	-	COL1A2	chr7	94040368	+
intron-3CDS	ENST00000472244	ENST00000297268		TCGA	LD	LUSC	TCGA-85-6175-01A	P4HB	chr17	79803747	-	COL1A2	chr7	94040368	+
5CDS-5UTR	ENST00000337334	ENST00000397967		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000337334	ENST00000340900		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000337334	ENST00000412779		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000337334	ENST00000555698		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000337334	ENST00000397970		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-5UTR	ENST00000353130	ENST00000397967		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000353130	ENST00000340900		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000353130	ENST00000412779		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000353130	ENST00000555698		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000353130	ENST00000397970		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-5UTR	ENST00000395752	ENST00000397967		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000395752	ENST00000340900		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000395752	ENST00000412779		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000395752	ENST00000555698		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
5CDS-intron	ENST00000395752	ENST00000397970		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
3UTR-5UTR	ENST00000554241	ENST00000397967		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
3UTR-intron	ENST00000554241	ENST00000340900		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
3UTR-intron	ENST00000554241	ENST00000412779		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
3UTR-intron	ENST00000554241	ENST00000555698		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
3UTR-intron	ENST00000554241	ENST00000397970		TCGA	LD	LUSC	TCGA-85-6560-01A	ABHD12B	chr14	51348344	+	RNASE1	chr14	21271163	-
Frame-shit	ENST00000453096	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000453096	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000453096	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000453096	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000453096	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000453096	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000453096	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3CDS	ENST00000531757	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3UTR	ENST00000531757	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3UTR	ENST00000531757	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000531757	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000531757	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000531757	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000531757	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
Frame-shit	ENST00000534641	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000534641	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000534641	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000534641	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000534641	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000534641	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000534641	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
Frame-shit	ENST00000265963	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000265963	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000265963	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000265963	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000265963	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000265963	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000265963	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-3CDS	ENST00000524753	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-3UTR	ENST00000524753	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-3UTR	ENST00000524753	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000524753	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000524753	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000524753	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000524753	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3CDS	ENST00000530496	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3UTR	ENST00000530496	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3UTR	ENST00000530496	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000530496	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000530496	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000530496	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000530496	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3CDS	ENST00000526630	ENST00000418988		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3UTR	ENST00000526630	ENST00000555531		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3UTR	ENST00000526630	ENST00000419365		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000526630	ENST00000524606		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000526630	ENST00000396394		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000526630	ENST00000396393		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-5UTR	ENST00000526630	ENST00000530457		TCGA	LD	LUSC	TCGA-85-6560-01A	GTF2H1	chr11	18361204	+	PSMA1	chr11	14526794	-
intron-3CDS	ENST00000585916	ENST00000390242		TCGA	LD	LUSC	TCGA-85-6561-01A	PIAS2	chr18	44388055	-	IGKJ1	chr2	89161435	-
intron-3CDS	ENST00000545673	ENST00000390242		TCGA	LD	LUSC	TCGA-85-6561-01A	PIAS2	chr18	44388055	-	IGKJ1	chr2	89161435	-
intron-3CDS	ENST00000324794	ENST00000390242		TCGA	LD	LUSC	TCGA-85-6561-01A	PIAS2	chr18	44388055	-	IGKJ1	chr2	89161435	-
intron-3CDS	ENST00000590944	ENST00000390242		TCGA	LD	LUSC	TCGA-85-6561-01A	PIAS2	chr18	44388055	-	IGKJ1	chr2	89161435	-
In-frame	ENST00000296755	ENST00000380639		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
In-frame	ENST00000296755	ENST00000543322		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
In-frame	ENST00000296755	ENST00000503868		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
5CDS-5UTR	ENST00000296755	ENST00000536805		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
5CDS-intron	ENST00000296755	ENST00000460837		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
3UTR-3CDS	ENST00000504183	ENST00000380639		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
3UTR-3CDS	ENST00000504183	ENST00000543322		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
3UTR-3CDS	ENST00000504183	ENST00000503868		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
3UTR-5UTR	ENST00000504183	ENST00000536805		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
3UTR-intron	ENST00000504183	ENST00000460837		TCGA	LD	LUSC	TCGA-85-6798-01A	MAP1B	chr5	71411626	+	PTCD2	chr5	71617999	+
5UTR-3CDS	ENST00000216190	ENST00000216181		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
5UTR-intron	ENST00000216190	ENST00000475726		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
5UTR-intron	ENST00000216190	ENST00000401701		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
intron-3CDS	ENST00000478547	ENST00000216181		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
intron-intron	ENST00000478547	ENST00000475726		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
intron-intron	ENST00000478547	ENST00000401701		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
5UTR-3CDS	ENST00000541106	ENST00000216181		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
5UTR-intron	ENST00000541106	ENST00000475726		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
5UTR-intron	ENST00000541106	ENST00000401701		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
intron-3CDS	ENST00000405442	ENST00000216181		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
intron-intron	ENST00000405442	ENST00000475726		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
intron-intron	ENST00000405442	ENST00000401701		TCGA	LD	LUSC	TCGA-85-7696-01A	EIF3D	chr22	36925123	-	MYH9	chr22	36682892	-
5UTR-5UTR	ENST00000393029	ENST00000511725		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393029	ENST00000253815		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393029	ENST00000398733		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393029	ENST00000505548		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000393028	ENST00000511725		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000393028	ENST00000253815		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000393028	ENST00000398733		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000393028	ENST00000505548		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000345425	ENST00000511725		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000345425	ENST00000253815		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000345425	ENST00000398733		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
intron-5UTR	ENST00000345425	ENST00000505548		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393033	ENST00000511725		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393033	ENST00000253815		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393033	ENST00000398733		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000393033	ENST00000505548		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000591349	ENST00000511725		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000591349	ENST00000253815		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000591349	ENST00000398733		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000591349	ENST00000505548		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000586027	ENST00000511725		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000586027	ENST00000253815		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000586027	ENST00000398733		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
5UTR-5UTR	ENST00000586027	ENST00000505548		TCGA	LD	LUSC	TCGA-85-7696-01A	GIPC1	chr19	14602468	-	UBE2D2	chr5	138979957	+
Frame-shit	ENST00000378017	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
Frame-shit	ENST00000378017	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
Frame-shit	ENST00000518547	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
Frame-shit	ENST00000518547	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
5UTR-3CDS	ENST00000354184	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
5UTR-3CDS	ENST00000354184	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000395508	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000395508	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
Frame-shit	ENST00000325064	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
Frame-shit	ENST00000325064	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000431961	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000431961	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000523587	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000523587	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000524090	ENST00000517956		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
intron-3CDS	ENST00000524090	ENST00000443022		TCGA	LD	LUSC	TCGA-85-7696-01A	MTSS1	chr8	125711767	-	FBXO32	chr8	124518814	-
3UTR-3CDS	ENST00000287667	ENST00000261798		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-3CDS	ENST00000287667	ENST00000377843		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-3CDS	ENST00000287667	ENST00000515435		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-3CDS	ENST00000287667	ENST00000504676		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-3CDS	ENST00000287667	ENST00000515768		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-3CDS	ENST00000287667	ENST00000606719		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-3CDS	ENST00000287667	ENST00000606299		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
3UTR-intron	ENST00000287667	ENST00000515748		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000261798		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000377843		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000515435		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000504676		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000515768		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000606719		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-3CDS	ENST00000566883	ENST00000606299		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
intron-intron	ENST00000566883	ENST00000515748		TCGA	LD	LUSC	TCGA-85-7696-01A	NOMO1	chr16	14989971	+	CSNK1A1	chr5	148886696	-
In-frame	ENST00000295598	ENST00000256637		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
5CDS-5UTR	ENST00000295598	ENST00000538502		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
5CDS-5UTR	ENST00000295598	ENST00000482236		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
In-frame	ENST00000537345	ENST00000256637		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
5CDS-5UTR	ENST00000537345	ENST00000538502		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
5CDS-5UTR	ENST00000537345	ENST00000482236		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
In-frame	ENST00000369496	ENST00000256637		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
5CDS-5UTR	ENST00000369496	ENST00000538502		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
5CDS-5UTR	ENST00000369496	ENST00000482236		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
intron-3CDS	ENST00000491156	ENST00000256637		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
intron-5UTR	ENST00000491156	ENST00000538502		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
intron-5UTR	ENST00000491156	ENST00000482236		TCGA	LD	LUSC	TCGA-85-7697-01A	ATP1A1	chr1	116930113	+	SORT1	chr1	109912211	-
Frame-shit	ENST00000215832	ENST00000291386		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000215832	ENST00000359060		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
Frame-shit	ENST00000398822	ENST00000291386		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000398822	ENST00000359060		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
Frame-shit	ENST00000544786	ENST00000291386		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000544786	ENST00000359060		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
intron-3CDS	ENST00000491588	ENST00000291386		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
intron-intron	ENST00000491588	ENST00000359060		TCGA	LD	LUSC	TCGA-85-7697-01A	MAPK1	chr22	22221612	-	SSU72	chr1	1480382	-
Frame-shit	ENST00000355303	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
Frame-shit	ENST00000398543	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
Frame-shit	ENST00000538023	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
intron-3CDS	ENST00000316296	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
Frame-shit	ENST00000530676	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
Frame-shit	ENST00000531349	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
3UTR-3CDS	ENST00000525494	ENST00000294312		TCGA	LD	LUSC	TCGA-85-7699-01A	ANO1	chr11	70026162	+	FGF19	chr11	69518132	-
In-frame	ENST00000392272	ENST00000289429		TCGA	LD	LUSC	TCGA-85-7710-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158224874	+
In-frame	ENST00000368173	ENST00000289429		TCGA	LD	LUSC	TCGA-85-7710-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158224874	+
5UTR-3CDS	ENST00000360089	ENST00000289429		TCGA	LD	LUSC	TCGA-85-7710-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158224874	+
In-frame	ENST00000359209	ENST00000289429		TCGA	LD	LUSC	TCGA-85-7710-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158224874	+
In-frame	ENST00000416935	ENST00000289429		TCGA	LD	LUSC	TCGA-85-7710-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158224874	+
intron-3CDS	ENST00000368172	ENST00000289429		TCGA	LD	LUSC	TCGA-85-7710-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158224874	+
5CDS-5UTR	ENST00000274376	ENST00000367460		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-3UTR	ENST00000274376	ENST00000481707		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-5UTR	ENST00000456692	ENST00000367460		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-3UTR	ENST00000456692	ENST00000481707		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-5UTR	ENST00000512763	ENST00000367460		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-3UTR	ENST00000512763	ENST00000481707		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-5UTR	ENST00000506290	ENST00000367460		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
5CDS-3UTR	ENST00000506290	ENST00000481707		TCGA	LD	LUSC	TCGA-85-7710-01A	RASA1	chr5	86674355	+	RGS18	chr1	192127761	+
In-frame	ENST00000369162	ENST00000369208		TCGA	LD	LUSC	TCGA-85-7843-01A	ASCC3	chr6	101037510	-	SIM1	chr6	100901720	-
In-frame	ENST00000369162	ENST00000262901		TCGA	LD	LUSC	TCGA-85-7843-01A	ASCC3	chr6	101037510	-	SIM1	chr6	100901720	-
intron-3CDS	ENST00000522650	ENST00000369208		TCGA	LD	LUSC	TCGA-85-7843-01A	ASCC3	chr6	101037510	-	SIM1	chr6	100901720	-
intron-3CDS	ENST00000522650	ENST00000262901		TCGA	LD	LUSC	TCGA-85-7843-01A	ASCC3	chr6	101037510	-	SIM1	chr6	100901720	-
intron-3CDS	ENST00000369143	ENST00000369208		TCGA	LD	LUSC	TCGA-85-7843-01A	ASCC3	chr6	101037510	-	SIM1	chr6	100901720	-
intron-3CDS	ENST00000369143	ENST00000262901		TCGA	LD	LUSC	TCGA-85-7843-01A	ASCC3	chr6	101037510	-	SIM1	chr6	100901720	-
Frame-shit	ENST00000276204	ENST00000371666		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
Frame-shit	ENST00000276204	ENST00000371642		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
5CDS-intron	ENST00000276204	ENST00000481868		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
5CDS-intron	ENST00000276204	ENST00000371637		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
Frame-shit	ENST00000276202	ENST00000371666		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
Frame-shit	ENST00000276202	ENST00000371642		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
5CDS-intron	ENST00000276202	ENST00000481868		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
5CDS-intron	ENST00000276202	ENST00000371637		TCGA	LD	LUSC	TCGA-85-7843-01A	DOCK11	chrX	117630036	+	IL13RA1	chrX	117874980	+
Frame-shit	ENST00000376840	ENST00000263713		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
Frame-shit	ENST00000376840	ENST00000443902		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
5CDS-intron	ENST00000376840	ENST00000331393		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
5CDS-intron	ENST00000376840	ENST00000443124		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
5CDS-intron	ENST00000376840	ENST00000452780		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
5CDS-intron	ENST00000376840	ENST00000488691		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-3CDS	ENST00000409318	ENST00000263713		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-3CDS	ENST00000409318	ENST00000443902		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000409318	ENST00000331393		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000409318	ENST00000443124		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000409318	ENST00000452780		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000409318	ENST00000488691		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-3CDS	ENST00000462819	ENST00000263713		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-3CDS	ENST00000462819	ENST00000443902		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000462819	ENST00000331393		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000462819	ENST00000443124		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000462819	ENST00000452780		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-intron	ENST00000462819	ENST00000488691		TCGA	LD	LUSC	TCGA-85-7843-01A	TBC1D8	chr2	101706716	-	EPB41L5	chr2	120885264	+
intron-3CDS	ENST00000557457	ENST00000368034		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000557457	ENST00000368033		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000557457	ENST00000322302		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000557457	ENST00000368032		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-intron	ENST00000557457	ENST00000481677		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000333244	ENST00000368034		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000333244	ENST00000368033		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000333244	ENST00000322302		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-3CDS	ENST00000333244	ENST00000368032		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
intron-intron	ENST00000333244	ENST00000481677		TCGA	LD	LUSC	TCGA-85-7844-01A	AHNAK2	chr14	105436793	-	CD244	chr1	160811691	-
In-frame	ENST00000064780	ENST00000541951		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000064780	ENST00000310571		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000064780	ENST00000535604		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000064780	ENST00000536003		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000064780	ENST00000544552		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000064780	ENST00000376384		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000064780	ENST00000543079		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000064780	ENST00000544909		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000393580	ENST00000541951		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000393580	ENST00000310571		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000393580	ENST00000535604		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000393580	ENST00000536003		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000393580	ENST00000544552		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000393580	ENST00000376384		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000393580	ENST00000543079		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000393580	ENST00000544909		TCGA	LD	LUSC	TCGA-85-7950-01A	RELT	chr11	73103513	+	PAAF1	chr11	73620444	+
In-frame	ENST00000372733	ENST00000519301		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000520407		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000523079		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000338921		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000356819		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000287845		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000341377		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000287842		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000521670		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000405005		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000520502		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000372733	ENST00000539990		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000372733	ENST00000523681		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000519301		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000520407		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000523079		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000338921		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000356819		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000287845		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000341377		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000287842		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000521670		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000405005		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000520502		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
In-frame	ENST00000537976	ENST00000539990		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000537976	ENST00000523681		TCGA	LD	LUSC	TCGA-85-7950-01A	SDC4	chr20	43959006	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000425528	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000425528	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
5CDS-intron	ENST00000425528	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000441499	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000441499	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
5CDS-intron	ENST00000441499	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000356861	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000356861	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
5CDS-intron	ENST00000356861	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000450764	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000450764	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
5CDS-intron	ENST00000450764	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000592287	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000592287	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
5CDS-intron	ENST00000592287	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000588216	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000588216	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
5CDS-intron	ENST00000588216	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
intron-3CDS	ENST00000589956	ENST00000397668		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
intron-3CDS	ENST00000589956	ENST00000264827		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
intron-intron	ENST00000589956	ENST00000589965		TCGA	LD	LUSC	TCGA-85-7950-01A	TNPO2	chr19	12821435	-	HOOK2	chr19	12877054	-
Frame-shit	ENST00000347330	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000347330	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000347330	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000413209	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000413209	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000413209	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000338641	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000338641	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000338641	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000403435	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000403435	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000403435	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000361452	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000361452	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000361452	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000403999	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000403999	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000403999	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000334961	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000334961	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000334961	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000353887	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000353887	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000353887	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000361166	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000361166	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000361166	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000397789	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000397789	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000397789	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
Frame-shit	ENST00000361676	ENST00000397641		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000361676	ENST00000215862		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-intron	ENST00000361676	ENST00000469915		TCGA	LD	LUSC	TCGA-85-8048-01A	NF2	chr22	30000101	+	MORC2	chr22	31346431	-
5CDS-5UTR	ENST00000398148	ENST00000454339		TCGA	LD	LUSC	TCGA-85-8052-01A	KHSRP	chr19	6421289	-	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000398148	ENST00000357901		TCGA	LD	LUSC	TCGA-85-8052-01A	KHSRP	chr19	6421289	-	ZNF441	chr19	11889145	+
3UTR-intron	ENST00000459775	ENST00000263863		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
3UTR-intron	ENST00000459775	ENST00000524600		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
3UTR-intron	ENST00000459775	ENST00000533041		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
3UTR-intron	ENST00000459775	ENST00000409696		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000450066	ENST00000263863		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000450066	ENST00000524600		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000450066	ENST00000533041		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000450066	ENST00000409696		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409025	ENST00000263863		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409025	ENST00000524600		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409025	ENST00000533041		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409025	ENST00000409696		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409470	ENST00000263863		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409470	ENST00000524600		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409470	ENST00000533041		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409470	ENST00000409696		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000323701	ENST00000263863		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000323701	ENST00000524600		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000323701	ENST00000533041		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000323701	ENST00000409696		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409766	ENST00000263863		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409766	ENST00000524600		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409766	ENST00000533041		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
5CDS-intron	ENST00000409766	ENST00000409696		TCGA	LD	LUSC	TCGA-85-8052-01A	USP39	chr2	85868135	+	GNLY	chr2	85910295	+
Frame-shit	ENST00000397166	ENST00000338825		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000397166	ENST00000520657		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
Frame-shit	ENST00000520272	ENST00000338825		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000520272	ENST00000520657		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000528888	ENST00000338825		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000528888	ENST00000520657		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
Frame-shit	ENST00000517385	ENST00000338825		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000517385	ENST00000520657		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
Frame-shit	ENST00000529845	ENST00000338825		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000529845	ENST00000520657		TCGA	LD	LUSC	TCGA-85-8070-01A	DDHD2	chr8	38111236	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000345739	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000345739	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000345739	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000345739	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000345739	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000264110	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000264110	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000264110	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000264110	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000264110	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409635	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409635	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409635	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409635	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409635	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000392543	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000392543	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000392543	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000392543	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000392543	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409499	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409499	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409499	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409499	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000409499	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000392544	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000392544	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000392544	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000392544	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000392544	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000426833	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000426833	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000426833	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000426833	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000426833	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000538946	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000538946	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000538946	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000538946	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000538946	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000487334	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000487334	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000487334	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000487334	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
3UTR-3CDS	ENST00000487334	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000409833	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000409833	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000409833	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000409833	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000409833	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000413123	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000413123	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000413123	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000413123	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
intron-3CDS	ENST00000413123	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000409437	ENST00000348749		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000409437	ENST00000261007		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000409437	ENST00000409219		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000409437	ENST00000409542		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
Frame-shit	ENST00000409437	ENST00000409323		TCGA	LD	LUSC	TCGA-85-8072-01A	ATF2	chr2	175945388	-	CHRNA1	chr2	175624361	-
In-frame	ENST00000263657	ENST00000296043		TCGA	LD	LUSC	TCGA-85-8072-01A	PNO1	chr2	68385661	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000263657	ENST00000473602		TCGA	LD	LUSC	TCGA-85-8072-01A	PNO1	chr2	68385661	+	SHROOM3	chr4	77476762	+
In-frame	ENST00000317568	ENST00000320580		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000317568	ENST00000529757		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000317568	ENST00000524815		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
intron-3CDS	ENST00000531296	ENST00000320580		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
intron-intron	ENST00000531296	ENST00000529757		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
intron-intron	ENST00000531296	ENST00000524815		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
In-frame	ENST00000355991	ENST00000320580		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000355991	ENST00000529757		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000355991	ENST00000524815		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
In-frame	ENST00000416776	ENST00000320580		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000416776	ENST00000529757		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
5CDS-intron	ENST00000416776	ENST00000524815		TCGA	LD	LUSC	TCGA-85-8276-01A	FRMD8	chr11	65167330	+	PACS1	chr11	65977833	+
In-frame	ENST00000282541	ENST00000334983		TCGA	LD	LUSC	TCGA-85-8276-01A	GPD1L	chr3	32188226	+	CMTM7	chr3	32483332	+
In-frame	ENST00000282541	ENST00000349718		TCGA	LD	LUSC	TCGA-85-8276-01A	GPD1L	chr3	32188226	+	CMTM7	chr3	32483332	+
3UTR-3CDS	ENST00000216044	ENST00000535113		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
3UTR-3CDS	ENST00000216044	ENST00000355830		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
3UTR-3CDS	ENST00000216044	ENST00000406767		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
3UTR-5UTR	ENST00000216044	ENST00000540952		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
intron-3CDS	ENST00000460605	ENST00000535113		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
intron-3CDS	ENST00000460605	ENST00000355830		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
intron-3CDS	ENST00000460605	ENST00000406767		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
intron-5UTR	ENST00000460605	ENST00000540952		TCGA	LD	LUSC	TCGA-85-8276-01A	GTPBP1	chr22	39126886	+	FAM227A	chr22	39034827	-
In-frame	ENST00000390551	ENST00000225964		TCGA	LD	LUSC	TCGA-85-8276-01A	IGHG3	chr14	106236630	-	COL1A1	chr17	48267741	-
5CDS-intron	ENST00000367576	ENST00000367519		TCGA	LD	LUSC	TCGA-85-8276-01A	LTV1	chr6	144167361	+	EPM2A	chr6	145823711	-
5CDS-intron	ENST00000367576	ENST00000496228		TCGA	LD	LUSC	TCGA-85-8276-01A	LTV1	chr6	144167361	+	EPM2A	chr6	145823711	-
5CDS-intron	ENST00000261207	ENST00000542120		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000261207	ENST00000229088		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-3UTR	ENST00000261207	ENST00000456757		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000261207	ENST00000539867		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000450142	ENST00000542120		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000450142	ENST00000229088		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-3UTR	ENST00000450142	ENST00000456757		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000450142	ENST00000539867		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000437004	ENST00000542120		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000437004	ENST00000229088		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-3UTR	ENST00000437004	ENST00000456757		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000437004	ENST00000539867		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
intron-intron	ENST00000546369	ENST00000542120		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
intron-intron	ENST00000546369	ENST00000229088		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
intron-3UTR	ENST00000546369	ENST00000456757		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
intron-intron	ENST00000546369	ENST00000539867		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000550107	ENST00000542120		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000550107	ENST00000229088		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-3UTR	ENST00000550107	ENST00000456757		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
5CDS-intron	ENST00000550107	ENST00000539867		TCGA	LD	LUSC	TCGA-85-8276-01A	PPP1R12A	chr12	80328475	-	TBC1D30	chr12	65179661	+
In-frame	ENST00000328195	ENST00000308683		TCGA	LD	LUSC	TCGA-85-8276-01A	PROSC	chr8	37623873	+	ZNF622	chr5	16463379	-
5UTR-intron	ENST00000278550	ENST00000535633		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000424319		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000343727		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000534731		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000525196		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000263317		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000532825		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000527956		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-5UTR	ENST00000278550	ENST00000542487		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000527626		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000528341		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000413594		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000375979		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000531342		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5UTR-intron	ENST00000278550	ENST00000393282		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000535633		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000424319		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000343727		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000534731		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000525196		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000263317		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000532825		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000527956		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-5UTR	ENST00000533038	ENST00000542487		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000527626		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000528341		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000413594		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000375979		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000531342		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
intron-intron	ENST00000533038	ENST00000393282		TCGA	LD	LUSC	TCGA-85-8276-01A	TENM4	chr11	78926853	-	NOX4	chr11	89231355	-
5CDS-3UTR	ENST00000256646	ENST00000453618		TCGA	LD	LUSC	TCGA-85-8277-01A	NOTCH2	chr1	120539620	-	SEC22B	chr1	145115735	-
5CDS-3UTR	ENST00000602566	ENST00000453618		TCGA	LD	LUSC	TCGA-85-8277-01A	NOTCH2	chr1	120539620	-	SEC22B	chr1	145115735	-
intron-3UTR	ENST00000493703	ENST00000453618		TCGA	LD	LUSC	TCGA-85-8277-01A	NOTCH2	chr1	120539620	-	SEC22B	chr1	145115735	-
In-frame	ENST00000369409	ENST00000369406		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
In-frame	ENST00000369409	ENST00000544913		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
5CDS-intron	ENST00000369409	ENST00000476640		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
In-frame	ENST00000369407	ENST00000369406		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
In-frame	ENST00000369407	ENST00000544913		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
5CDS-intron	ENST00000369407	ENST00000476640		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
3UTR-3CDS	ENST00000482968	ENST00000369406		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
3UTR-3CDS	ENST00000482968	ENST00000544913		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
3UTR-intron	ENST00000482968	ENST00000476640		TCGA	LD	LUSC	TCGA-85-8277-01A	PHGDH	chr1	120283141	+	HMGCS2	chr1	120295297	-
intron-3CDS	ENST00000322927	ENST00000290231		TCGA	LD	LUSC	TCGA-85-8277-01A	ZNF335	chr20	44577542	-	NCOA5	chr20	44693867	-
intron-3CDS	ENST00000426788	ENST00000290231		TCGA	LD	LUSC	TCGA-85-8277-01A	ZNF335	chr20	44577542	-	NCOA5	chr20	44693867	-
intron-3CDS	ENST00000494955	ENST00000290231		TCGA	LD	LUSC	TCGA-85-8277-01A	ZNF335	chr20	44577542	-	NCOA5	chr20	44693867	-
3UTR-5UTR	ENST00000474476	ENST00000502463		TCGA	LD	LUSC	TCGA-85-8351-01A	FGGY	chr1	59922748	+	CASC11	chr8	128701668	-
5CDS-5UTR	ENST00000371218	ENST00000502463		TCGA	LD	LUSC	TCGA-85-8351-01A	FGGY	chr1	59922748	+	CASC11	chr8	128701668	-
5CDS-5UTR	ENST00000303721	ENST00000502463		TCGA	LD	LUSC	TCGA-85-8351-01A	FGGY	chr1	59922748	+	CASC11	chr8	128701668	-
5CDS-5UTR	ENST00000371212	ENST00000502463		TCGA	LD	LUSC	TCGA-85-8351-01A	FGGY	chr1	59922748	+	CASC11	chr8	128701668	-
intron-5UTR	ENST00000371210	ENST00000502463		TCGA	LD	LUSC	TCGA-85-8351-01A	FGGY	chr1	59922748	+	CASC11	chr8	128701668	-
5CDS-3UTR	ENST00000377707	ENST00000525437		TCGA	LD	LUSC	TCGA-85-8352-01A	SHB	chr9	37974619	-	SLC22A20	chr11	65009461	+
intron-3UTR	ENST00000377700	ENST00000525437		TCGA	LD	LUSC	TCGA-85-8352-01A	SHB	chr9	37974619	-	SLC22A20	chr11	65009461	+
intron-3CDS	ENST00000462705	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000462705	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3CDS	ENST00000393785	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000393785	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3CDS	ENST00000481632	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000481632	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3CDS	ENST00000471418	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000471418	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
5UTR-3CDS	ENST00000357258	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
5UTR-3UTR	ENST00000357258	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3CDS	ENST00000464560	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000464560	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
5UTR-3CDS	ENST00000488663	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
5UTR-3UTR	ENST00000488663	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3CDS	ENST00000474710	ENST00000373212		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000474710	ENST00000481106		TCGA	LD	LUSC	TCGA-85-8352-01A	ZBTB20	chr3	114519948	-	SH3BGRL	chrX	80532483	+
5CDS-5UTR	ENST00000446256	ENST00000260379		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000446256	ENST00000357790		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-intron	ENST00000446256	ENST00000560274		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000445061	ENST00000260379		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000445061	ENST00000357790		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-intron	ENST00000445061	ENST00000560274		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
intron-5UTR	ENST00000476446	ENST00000260379		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
intron-5UTR	ENST00000476446	ENST00000357790		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
intron-intron	ENST00000476446	ENST00000560274		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000348968	ENST00000260379		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000348968	ENST00000357790		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-intron	ENST00000348968	ENST00000560274		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000457607	ENST00000260379		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-5UTR	ENST00000457607	ENST00000357790		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
5CDS-intron	ENST00000457607	ENST00000560274		TCGA	LD	LUSC	TCGA-85-8354-01A	DHX30	chr3	47884745	+	RPLP1	chr15	69745170	+
intron-intron	ENST00000545334	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
intron-intron	ENST00000545334	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000537927	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000537927	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000318304	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000318304	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
intron-intron	ENST00000535047	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
intron-intron	ENST00000535047	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000542629	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000542629	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000228425	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
5CDS-intron	ENST00000228425	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
intron-intron	ENST00000541633	ENST00000598312		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
intron-intron	ENST00000541633	ENST00000358067		TCGA	LD	LUSC	TCGA-85-8354-01A	PPFIBP1	chr12	27813878	+	ZNF329	chr19	58644043	-
In-frame	ENST00000263856	ENST00000165698		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000263856	ENST00000535845		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
Frame-shit	ENST00000263856	ENST00000541910		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000263856	ENST00000538924		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000263856	ENST00000540790		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5CDS-5UTR	ENST00000263856	ENST00000473407		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000409727	ENST00000165698		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000409727	ENST00000535845		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
Frame-shit	ENST00000409727	ENST00000541910		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000409727	ENST00000538924		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000409727	ENST00000540790		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5CDS-5UTR	ENST00000409727	ENST00000473407		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5UTR-3CDS	ENST00000409225	ENST00000165698		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5UTR-3CDS	ENST00000409225	ENST00000535845		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5UTR-3CDS	ENST00000409225	ENST00000541910		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5UTR-3CDS	ENST00000409225	ENST00000538924		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5UTR-3CDS	ENST00000409225	ENST00000540790		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
5UTR-5UTR	ENST00000409225	ENST00000473407		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000439940	ENST00000165698		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000439940	ENST00000535845		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000439940	ENST00000541910		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000439940	ENST00000538924		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000439940	ENST00000540790		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-5UTR	ENST00000439940	ENST00000473407		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000494623	ENST00000165698		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000494623	ENST00000535845		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000494623	ENST00000541910		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000494623	ENST00000538924		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-3CDS	ENST00000494623	ENST00000540790		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
intron-5UTR	ENST00000494623	ENST00000473407		TCGA	LD	LUSC	TCGA-85-8355-01A	CHMP3	chr2	86790427	-	REEP1	chr2	86459925	-
In-frame	ENST00000324679	ENST00000267460		TCGA	LD	LUSC	TCGA-85-8355-01A	SAV1	chr14	51111462	-	PELI2	chr14	56645053	+
5CDS-intron	ENST00000282516	ENST00000257765		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000282516	ENST00000370384		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
5CDS-5UTR	ENST00000282516	ENST00000484801		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000448238	ENST00000257765		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
5CDS-intron	ENST00000448238	ENST00000370384		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
5CDS-5UTR	ENST00000448238	ENST00000484801		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
intron-intron	ENST00000504430	ENST00000257765		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
intron-intron	ENST00000504430	ENST00000370384		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
intron-5UTR	ENST00000504430	ENST00000484801		TCGA	LD	LUSC	TCGA-85-8479-01A	NIPBL	chr5	37049403	+	KHDC1	chr6	74001763	-
Frame-shit	ENST00000353487	ENST00000242592		TCGA	LD	LUSC	TCGA-85-8479-01A	SPPL3	chr12	121341648	-	ACADS	chr12	121164829	+
Frame-shit	ENST00000353487	ENST00000411593		TCGA	LD	LUSC	TCGA-85-8479-01A	SPPL3	chr12	121341648	-	ACADS	chr12	121164829	+
Frame-shit	ENST00000353487	ENST00000344651		TCGA	LD	LUSC	TCGA-85-8479-01A	SPPL3	chr12	121341648	-	UNC119B	chr12	121157723	+
5CDS-intron	ENST00000353487	ENST00000539658		TCGA	LD	LUSC	TCGA-85-8479-01A	SPPL3	chr12	121341648	-	UNC119B	chr12	121157723	+
5CDS-intron	ENST00000320955	ENST00000568630		TCGA	LD	LUSC	TCGA-85-8479-01A	SPTBN5	chr15	42153617	-	MGA	chr15	42053937	+
5CDS-intron	ENST00000320955	ENST00000545763		TCGA	LD	LUSC	TCGA-85-8479-01A	SPTBN5	chr15	42153617	-	MGA	chr15	42053937	+
5CDS-intron	ENST00000320955	ENST00000389936		TCGA	LD	LUSC	TCGA-85-8479-01A	SPTBN5	chr15	42153617	-	MGA	chr15	42053937	+
5CDS-intron	ENST00000320955	ENST00000219905		TCGA	LD	LUSC	TCGA-85-8479-01A	SPTBN5	chr15	42153617	-	MGA	chr15	42053937	+
5CDS-intron	ENST00000320955	ENST00000566586		TCGA	LD	LUSC	TCGA-85-8479-01A	SPTBN5	chr15	42153617	-	MGA	chr15	42053937	+
5CDS-intron	ENST00000320955	ENST00000570161		TCGA	LD	LUSC	TCGA-85-8479-01A	SPTBN5	chr15	42153617	-	MGA	chr15	42053937	+
5UTR-3CDS	ENST00000264771	ENST00000247933		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-3CDS	ENST00000264771	ENST00000453894		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-intron	ENST00000264771	ENST00000509744		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-5UTR	ENST00000264771	ENST00000514224		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-3CDS	ENST00000515740	ENST00000247933		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-3CDS	ENST00000515740	ENST00000453894		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-intron	ENST00000515740	ENST00000509744		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-5UTR	ENST00000515740	ENST00000514224		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-3CDS	ENST00000508204	ENST00000247933		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-3CDS	ENST00000508204	ENST00000453894		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-intron	ENST00000508204	ENST00000509744		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
5UTR-5UTR	ENST00000508204	ENST00000514224		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
intron-3CDS	ENST00000504180	ENST00000247933		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
intron-3CDS	ENST00000504180	ENST00000453894		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
intron-intron	ENST00000504180	ENST00000509744		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
intron-5UTR	ENST00000504180	ENST00000514224		TCGA	LD	LUSC	TCGA-85-8479-01A	TMEM175	chr4	926328	+	IDUA	chr4	994400	+
In-frame	ENST00000368309	ENST00000464356		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000368309	ENST00000348159		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000368309	ENST00000353795		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000368309	ENST00000340875		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5CDS-5UTR	ENST00000368309	ENST00000368240		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5CDS-intron	ENST00000368309	ENST00000360595		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-3CDS	ENST00000472638	ENST00000464356		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-5UTR	ENST00000472638	ENST00000348159		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-5UTR	ENST00000472638	ENST00000353795		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-5UTR	ENST00000472638	ENST00000340875		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-5UTR	ENST00000472638	ENST00000368240		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-intron	ENST00000472638	ENST00000360595		TCGA	LD	LUSC	TCGA-85-8479-01A	UBQLN4	chr1	156023385	-	MEF2D	chr1	156453222	-
5UTR-3UTR	ENST00000369408	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
3UTR-3UTR	ENST00000520886	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
5UTR-3UTR	ENST00000339746	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
5UTR-3UTR	ENST00000447838	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
intron-3UTR	ENST00000522441	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
intron-3UTR	ENST00000485637	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
intron-3UTR	ENST00000520793	ENST00000551025		TCGA	LD	LUSC	TCGA-85-8481-01A	ANKRD6	chr6	90143094	+	CASP8AP2	chr6	90581008	+
5CDS-5UTR	ENST00000377604	ENST00000338270		TCGA	LD	LUSC	TCGA-85-8580-01A	RBM10	chrX	47006897	+	ERAS	chrX	48687491	+
5CDS-5UTR	ENST00000329236	ENST00000338270		TCGA	LD	LUSC	TCGA-85-8580-01A	RBM10	chrX	47006897	+	ERAS	chrX	48687491	+
5CDS-5UTR	ENST00000345781	ENST00000338270		TCGA	LD	LUSC	TCGA-85-8580-01A	RBM10	chrX	47006897	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000478410	ENST00000338270		TCGA	LD	LUSC	TCGA-85-8580-01A	RBM10	chrX	47006897	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000346672	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-3UTR	ENST00000346672	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-intron	ENST00000346672	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000346672	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-3UTR	ENST00000360962	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-intron	ENST00000360962	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000360962	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-3UTR	ENST00000527634	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-intron	ENST00000527634	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000527634	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-3UTR	ENST00000540737	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-intron	ENST00000540737	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000540737	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-3UTR	ENST00000532565	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-intron	ENST00000532565	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5UTR-5UTR	ENST00000532565	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-3UTR	ENST00000525449	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-intron	ENST00000525449	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
intron-5UTR	ENST00000525449	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000393799		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-3UTR	ENST00000527368	ENST00000530427		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000393800		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000534534		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000524845		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-intron	ENST00000527368	ENST00000265637		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000524904		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000393801		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000265636		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000529710		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
3UTR-5UTR	ENST00000527368	ENST00000527403		TCGA	LD	LUSC	TCGA-85-8582-01A	C11orf80	chr11	66512390	+	PPP6R3	chr11	68286969	+
5CDS-5UTR	ENST00000398645	ENST00000416067		TCGA	LD	LUSC	TCGA-85-8582-01A	KDM2A	chr11	66888829	+	TEKT4P2	chr21	9909277	-
5CDS-5UTR	ENST00000529006	ENST00000416067		TCGA	LD	LUSC	TCGA-85-8582-01A	KDM2A	chr11	66888829	+	TEKT4P2	chr21	9909277	-
intron-5UTR	ENST00000526258	ENST00000416067		TCGA	LD	LUSC	TCGA-85-8582-01A	KDM2A	chr11	66888829	+	TEKT4P2	chr21	9909277	-
intron-5UTR	ENST00000308783	ENST00000416067		TCGA	LD	LUSC	TCGA-85-8582-01A	KDM2A	chr11	66888829	+	TEKT4P2	chr21	9909277	-
intron-5UTR	ENST00000530342	ENST00000416067		TCGA	LD	LUSC	TCGA-85-8582-01A	KDM2A	chr11	66888829	+	TEKT4P2	chr21	9909277	-
intron-3CDS	ENST00000398081	ENST00000503581		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000398081	ENST00000370621		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000398081	ENST00000370616		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000398081	ENST00000393380		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000398081	ENST00000342421		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000398081	ENST00000370618		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000398081	ENST00000486069		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000468090	ENST00000503581		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000468090	ENST00000370621		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000468090	ENST00000370616		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000468090	ENST00000393380		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000468090	ENST00000342421		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000468090	ENST00000370618		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000468090	ENST00000486069		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000291565	ENST00000503581		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000291565	ENST00000370621		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000291565	ENST00000370616		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000291565	ENST00000393380		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000291565	ENST00000342421		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000291565	ENST00000370618		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000291565	ENST00000486069		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000327574	ENST00000503581		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000327574	ENST00000370621		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000327574	ENST00000370616		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000327574	ENST00000393380		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000327574	ENST00000342421		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000327574	ENST00000370618		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000327574	ENST00000486069		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000476313	ENST00000503581		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000476313	ENST00000370621		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000476313	ENST00000370616		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000476313	ENST00000393380		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000476313	ENST00000342421		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000476313	ENST00000370618		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-intron	ENST00000476313	ENST00000486069		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000467908	ENST00000503581		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000467908	ENST00000370621		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
Frame-shit	ENST00000467908	ENST00000370616		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000467908	ENST00000393380		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000467908	ENST00000342421		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000467908	ENST00000370618		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
5CDS-intron	ENST00000467908	ENST00000486069		TCGA	LD	LUSC	TCGA-85-8582-01A	PDXK	chr21	45175935	+	EYS	chr6	65016975	-
intron-3CDS	ENST00000541592	ENST00000315330		TCGA	LD	LUSC	TCGA-85-8584-01A	HIST4H4	chr12	14923613	-	CLEC1A	chr12	10234012	-
intron-3CDS	ENST00000541592	ENST00000457018		TCGA	LD	LUSC	TCGA-85-8584-01A	HIST4H4	chr12	14923613	-	CLEC1A	chr12	10234012	-
intron-intron	ENST00000541592	ENST00000420265		TCGA	LD	LUSC	TCGA-85-8584-01A	HIST4H4	chr12	14923613	-	CLEC1A	chr12	10234012	-
intron-3CDS	ENST00000539745	ENST00000315330		TCGA	LD	LUSC	TCGA-85-8584-01A	HIST4H4	chr12	14923613	-	CLEC1A	chr12	10234012	-
intron-3CDS	ENST00000539745	ENST00000457018		TCGA	LD	LUSC	TCGA-85-8584-01A	HIST4H4	chr12	14923613	-	CLEC1A	chr12	10234012	-
intron-intron	ENST00000539745	ENST00000420265		TCGA	LD	LUSC	TCGA-85-8584-01A	HIST4H4	chr12	14923613	-	CLEC1A	chr12	10234012	-
5CDS-5UTR	ENST00000256458	ENST00000335542		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-5UTR	ENST00000256458	ENST00000430179		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000422159		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000450603		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000449554		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000446937		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-5UTR	ENST00000256458	ENST00000457360		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000437422		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000439975		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-5UTR	ENST00000256458	ENST00000287656		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000449238		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000429122		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5CDS-intron	ENST00000256458	ENST00000476283		TCGA	LD	LUSC	TCGA-85-8584-01A	IRAK2	chr3	10261473	+	GHRL	chr3	10332674	-
5UTR-3CDS	ENST00000312561	ENST00000381340		TCGA	LD	LUSC	TCGA-85-8584-01A	KIAA1551	chr12	32113805	+	ITPR2	chr12	26540527	-
5UTR-intron	ENST00000312561	ENST00000545902		TCGA	LD	LUSC	TCGA-85-8584-01A	KIAA1551	chr12	32113805	+	ITPR2	chr12	26540527	-
5UTR-intron	ENST00000312561	ENST00000242737		TCGA	LD	LUSC	TCGA-85-8584-01A	KIAA1551	chr12	32113805	+	ITPR2	chr12	26540527	-
3UTR-3CDS	ENST00000535596	ENST00000381340		TCGA	LD	LUSC	TCGA-85-8584-01A	KIAA1551	chr12	32113805	+	ITPR2	chr12	26540527	-
3UTR-intron	ENST00000535596	ENST00000545902		TCGA	LD	LUSC	TCGA-85-8584-01A	KIAA1551	chr12	32113805	+	ITPR2	chr12	26540527	-
3UTR-intron	ENST00000535596	ENST00000242737		TCGA	LD	LUSC	TCGA-85-8584-01A	KIAA1551	chr12	32113805	+	ITPR2	chr12	26540527	-
intron-intron	ENST00000523102	ENST00000540757		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000523102	ENST00000010132		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000523102	ENST00000543431		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000523102	ENST00000545342		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000523102	ENST00000539490		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000524270	ENST00000540757		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000524270	ENST00000010132		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000524270	ENST00000543431		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000524270	ENST00000545342		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000524270	ENST00000539490		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000519357	ENST00000540757		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000519357	ENST00000010132		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000519357	ENST00000543431		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000519357	ENST00000545342		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000519357	ENST00000539490		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000437851	ENST00000540757		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000437851	ENST00000010132		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000437851	ENST00000543431		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000437851	ENST00000545342		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
intron-intron	ENST00000437851	ENST00000539490		TCGA	LD	LUSC	TCGA-85-8584-01A	SPSB2	chr12	6981439	-	DYRK4	chr12	4671420	+
In-frame	ENST00000415708	ENST00000464167		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000415708	ENST00000329092		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000415708	ENST00000448864		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
In-frame	ENST00000428395	ENST00000464167		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000428395	ENST00000329092		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000428395	ENST00000448864		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
In-frame	ENST00000241502	ENST00000464167		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000241502	ENST00000329092		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000241502	ENST00000448864		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
In-frame	ENST00000424384	ENST00000464167		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000424384	ENST00000329092		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
5CDS-3UTR	ENST00000424384	ENST00000448864		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
intron-3CDS	ENST00000492360	ENST00000464167		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
intron-3UTR	ENST00000492360	ENST00000329092		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
intron-3UTR	ENST00000492360	ENST00000448864		TCGA	LD	LUSC	TCGA-85-8664-01A	FYTTD1	chr3	197503872	+	RPL35A	chr3	197680874	+
intron-3CDS	ENST00000319622	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000319622	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000319622	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000319622	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000319622	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000319622	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000319622	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000565184	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000565184	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000565184	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565184	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565184	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565184	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565184	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000389093	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000389093	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000389093	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000389093	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000389093	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000389093	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000389093	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000335181	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000335181	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000335181	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000335181	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000335181	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000335181	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000335181	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000568883	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000568883	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000568883	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568883	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568883	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568883	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568883	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000449901	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000449901	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-3CDS	ENST00000449901	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000449901	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000449901	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000449901	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
5UTR-5UTR	ENST00000449901	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000565154	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000565154	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000565154	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565154	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565154	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565154	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000565154	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000568459	ENST00000569547		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000568459	ENST00000395258		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000568459	ENST00000287202		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568459	ENST00000539635		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568459	ENST00000543764		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568459	ENST00000567083		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-5UTR	ENST00000568459	ENST00000569311		TCGA	LD	LUSC	TCGA-85-8664-01A	PKM	chr15	72523457	-	CELF6	chr15	72582596	-
intron-3CDS	ENST00000605917	ENST00000229922		TCGA	LD	LUSC	TCGA-85-A4CL-01A	CASC15	chr6	22020771	+	CAP2	chr6	17463227	+
intron-3CDS	ENST00000605917	ENST00000489374		TCGA	LD	LUSC	TCGA-85-A4CL-01A	CASC15	chr6	22020771	+	CAP2	chr6	17463227	+
intron-intron	ENST00000605917	ENST00000378990		TCGA	LD	LUSC	TCGA-85-A4CL-01A	CASC15	chr6	22020771	+	CAP2	chr6	17463227	+
intron-intron	ENST00000605917	ENST00000493172		TCGA	LD	LUSC	TCGA-85-A4CL-01A	CASC15	chr6	22020771	+	CAP2	chr6	17463227	+
intron-intron	ENST00000605917	ENST00000465994		TCGA	LD	LUSC	TCGA-85-A4CL-01A	CASC15	chr6	22020771	+	CAP2	chr6	17463227	+
Frame-shit	ENST00000380338	ENST00000223864		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000380338	ENST00000482696		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
5UTR-3CDS	ENST00000355930	ENST00000223864		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
5UTR-5UTR	ENST00000355930	ENST00000482696		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000429426	ENST00000223864		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000429426	ENST00000482696		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
5UTR-3CDS	ENST00000475957	ENST00000223864		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
5UTR-5UTR	ENST00000475957	ENST00000482696		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000380321	ENST00000223864		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000380321	ENST00000482696		TCGA	LD	LUSC	TCGA-85-A4CL-01A	MLLT3	chr9	20620653	-	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000381769	ENST00000263087		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
intron-intron	ENST00000381769	ENST00000571185		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5UTR-3CDS	ENST00000348335	ENST00000263087		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5UTR-intron	ENST00000348335	ENST00000571185		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5UTR-3CDS	ENST00000381771	ENST00000263087		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5UTR-intron	ENST00000381771	ENST00000571185		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5UTR-3CDS	ENST00000158166	ENST00000263087		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5UTR-intron	ENST00000158166	ENST00000571185		TCGA	LD	LUSC	TCGA-85-A4CN-01A	CAMKK1	chr17	3796233	-	ITGAE	chr17	3662847	-
5CDS-intron	ENST00000216225	ENST00000380512		TCGA	LD	LUSC	TCGA-85-A4CN-01A	RBX1	chr22	41363888	+	EIF4A1	chr17	7481545	+
5CDS-intron	ENST00000216225	ENST00000293831		TCGA	LD	LUSC	TCGA-85-A4CN-01A	RBX1	chr22	41363888	+	EIF4A1	chr17	7481545	+
5CDS-intron	ENST00000216225	ENST00000577269		TCGA	LD	LUSC	TCGA-85-A4CN-01A	RBX1	chr22	41363888	+	EIF4A1	chr17	7481545	+
5CDS-intron	ENST00000216225	ENST00000582746		TCGA	LD	LUSC	TCGA-85-A4CN-01A	RBX1	chr22	41363888	+	EIF4A1	chr17	7481545	+
5CDS-intron	ENST00000216225	ENST00000581808		TCGA	LD	LUSC	TCGA-85-A4CN-01A	RBX1	chr22	41363888	+	EIF4A1	chr17	7481545	+
intron-3CDS	ENST00000355831	ENST00000409484		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000355831	ENST00000468308		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000355831	ENST00000321348		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-intron	ENST00000355831	ENST00000375252		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3CDS	ENST00000343439	ENST00000409484		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000343439	ENST00000468308		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000343439	ENST00000321348		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-intron	ENST00000343439	ENST00000375252		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3CDS	ENST00000392782	ENST00000409484		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000392782	ENST00000468308		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000392782	ENST00000321348		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-intron	ENST00000392782	ENST00000375252		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3CDS	ENST00000392783	ENST00000409484		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000392783	ENST00000468308		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000392783	ENST00000321348		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-intron	ENST00000392783	ENST00000375252		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3CDS	ENST00000483316	ENST00000409484		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000483316	ENST00000468308		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-3UTR	ENST00000483316	ENST00000321348		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
intron-intron	ENST00000483316	ENST00000375252		TCGA	LD	LUSC	TCGA-85-A4JB-01A	BAZ2B	chr2	160471905	-	CYBRD1	chr2	172398095	+
Frame-shit	ENST00000347053	ENST00000379007		TCGA	LD	LUSC	TCGA-85-A4JB-01A	COG5	chr7	106938587	-	C7orf66	chr7	108524641	-
Frame-shit	ENST00000297135	ENST00000379007		TCGA	LD	LUSC	TCGA-85-A4JB-01A	COG5	chr7	106938587	-	C7orf66	chr7	108524641	-
Frame-shit	ENST00000393603	ENST00000379007		TCGA	LD	LUSC	TCGA-85-A4JB-01A	COG5	chr7	106938587	-	C7orf66	chr7	108524641	-
intron-3CDS	ENST00000475638	ENST00000379007		TCGA	LD	LUSC	TCGA-85-A4JB-01A	COG5	chr7	106938587	-	C7orf66	chr7	108524641	-
Frame-shit	ENST00000359015	ENST00000421351		TCGA	LD	LUSC	TCGA-85-A4JB-01A	MAP3K5	chr6	137112848	-	PERP	chr6	138417631	-
intron-3CDS	ENST00000355845	ENST00000421351		TCGA	LD	LUSC	TCGA-85-A4JB-01A	MAP3K5	chr6	137112848	-	PERP	chr6	138417631	-
intron-3CDS	ENST00000463140	ENST00000421351		TCGA	LD	LUSC	TCGA-85-A4JB-01A	MAP3K5	chr6	137112848	-	PERP	chr6	138417631	-
In-frame	ENST00000253925	ENST00000405409		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000414461		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000449924		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000262829		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000397303		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000359369		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000416721		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000253925	ENST00000438146		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000405409		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000414461		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000449924		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000262829		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000397303		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000359369		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000416721		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
In-frame	ENST00000389547	ENST00000438146		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000405409		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000414461		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000449924		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000262829		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000397303		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000359369		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000416721		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
intron-3CDS	ENST00000530548	ENST00000438146		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70118542	+	RBFOX2	chr22	36164396	-
5CDS-intron	ENST00000253925	ENST00000449833		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000409161		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000423696		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000338508		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000409530		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000449116		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000357171		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000253925	ENST00000468619		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000449833		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000409161		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000423696		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000338508		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000409530		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000449116		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000357171		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
5CDS-intron	ENST00000389547	ENST00000468619		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000449833		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000409161		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000423696		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000338508		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000409530		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000449116		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000357171		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000530548	ENST00000468619		TCGA	LD	LUSC	TCGA-85-A4QQ-01A	PPFIA1	chr11	70185410	+	SHANK2	chr11	70821097	-
intron-intron	ENST00000323670	ENST00000334181		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-3UTR	ENST00000323670	ENST00000597296		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-intron	ENST00000392276	ENST00000334181		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-3UTR	ENST00000392276	ENST00000597296		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-intron	ENST00000592153	ENST00000334181		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-3UTR	ENST00000592153	ENST00000597296		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-intron	ENST00000392275	ENST00000334181		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-3UTR	ENST00000392275	ENST00000597296		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-intron	ENST00000392278	ENST00000334181		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-3UTR	ENST00000392278	ENST00000597296		TCGA	LD	LUSC	TCGA-85-A4QR-01A	C19orf12	chr19	30192081	-	ZNF749	chr19	57949742	+
intron-3CDS	ENST00000372979	ENST00000414778		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000372979	ENST00000373965		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000372979	ENST00000395438		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000409834		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395440		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395446		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395442		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395445		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000373957		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395432		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395433		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000361849		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000395430		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000320301		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000437009		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000373955		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000372979	ENST00000463095		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000454759	ENST00000414778		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000454759	ENST00000373965		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000454759	ENST00000395438		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000409834		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395440		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395446		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395442		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395445		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000373957		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395432		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395433		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000361849		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000395430		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000320301		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000437009		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000373955		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000454759	ENST00000463095		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000430082	ENST00000414778		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000430082	ENST00000373965		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000430082	ENST00000395438		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000409834		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395440		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395446		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395442		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395445		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000373957		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395432		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395433		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000361849		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000395430		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000320301		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000437009		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000373955		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000430082	ENST00000463095		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000610256	ENST00000414778		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000610256	ENST00000373965		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-3CDS	ENST00000610256	ENST00000395438		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000409834		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395440		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395446		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395442		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395445		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000373957		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395432		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395433		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000361849		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000395430		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000320301		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000437009		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000373955		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
intron-intron	ENST00000610256	ENST00000463095		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ECD	chr10	74894361	-	PCDH15	chr10	55996691	-
3UTR-3CDS	ENST00000371743	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000371743	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000371743	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-3CDS	ENST00000450535	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000450535	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000450535	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-3CDS	ENST00000441722	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-intron	ENST00000441722	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-intron	ENST00000441722	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-3CDS	ENST00000417721	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-intron	ENST00000417721	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-intron	ENST00000417721	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-3CDS	ENST00000458653	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000458653	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000458653	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-3CDS	ENST00000326677	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-intron	ENST00000326677	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
intron-intron	ENST00000326677	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-3CDS	ENST00000428008	ENST00000361727		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000428008	ENST00000538075		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
3UTR-intron	ENST00000428008	ENST00000463592		TCGA	LD	LUSC	TCGA-85-A4QR-01A	ZFAS1	chr20	47897501	+	CNTNAP2	chr7	147183027	+
5CDS-5UTR	ENST00000307116	ENST00000299432		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-intron	ENST00000307116	ENST00000372912		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-5UTR	ENST00000373008	ENST00000299432		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-intron	ENST00000373008	ENST00000372912		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-5UTR	ENST00000263556	ENST00000299432		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-intron	ENST00000263556	ENST00000372912		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-5UTR	ENST00000412021	ENST00000299432		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-intron	ENST00000412021	ENST00000372912		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-5UTR	ENST00000440381	ENST00000299432		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-intron	ENST00000440381	ENST00000372912		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-5UTR	ENST00000394890	ENST00000299432		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
5CDS-intron	ENST00000394890	ENST00000372912		TCGA	LD	LUSC	TCGA-85-A50M-01A	P4HA1	chr10	74831787	-	MSS51	chr10	75188059	-
Frame-shit	ENST00000331079	ENST00000257264		TCGA	LD	LUSC	TCGA-85-A50M-01A	PRMT3	chr11	20486092	+	TCN1	chr11	59629155	-
5CDS-5UTR	ENST00000331079	ENST00000532419		TCGA	LD	LUSC	TCGA-85-A50M-01A	PRMT3	chr11	20486092	+	TCN1	chr11	59629155	-
Frame-shit	ENST00000437750	ENST00000257264		TCGA	LD	LUSC	TCGA-85-A50M-01A	PRMT3	chr11	20486092	+	TCN1	chr11	59629155	-
5CDS-5UTR	ENST00000437750	ENST00000532419		TCGA	LD	LUSC	TCGA-85-A50M-01A	PRMT3	chr11	20486092	+	TCN1	chr11	59629155	-
Frame-shit	ENST00000301761	ENST00000263773		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
5CDS-intron	ENST00000301761	ENST00000534003		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
Frame-shit	ENST00000542074	ENST00000263773		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
5CDS-intron	ENST00000542074	ENST00000534003		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
Frame-shit	ENST00000537782	ENST00000263773		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
5CDS-intron	ENST00000537782	ENST00000534003		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
Frame-shit	ENST00000543265	ENST00000263773		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
5CDS-intron	ENST00000543265	ENST00000534003		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
Frame-shit	ENST00000534878	ENST00000263773		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
5CDS-intron	ENST00000534878	ENST00000534003		TCGA	LD	LUSC	TCGA-85-A50M-01A	SDHAF2	chr11	61197654	+	FNBP4	chr11	47744868	-
intron-3UTR	ENST00000556931	ENST00000368439		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000556931	ENST00000368436		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000556931	ENST00000308987		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000556931	ENST00000471245		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000556931	ENST00000600888		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000505139	ENST00000368439		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000505139	ENST00000368436		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000505139	ENST00000308987		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000505139	ENST00000471245		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000505139	ENST00000600888		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
3UTR-3UTR	ENST00000368408	ENST00000368439		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
3UTR-intron	ENST00000368408	ENST00000368436		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
3UTR-3UTR	ENST00000368408	ENST00000308987		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
3UTR-3UTR	ENST00000368408	ENST00000471245		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
3UTR-intron	ENST00000368408	ENST00000600888		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000418360	ENST00000368439		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000418360	ENST00000368436		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000418360	ENST00000308987		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000418360	ENST00000471245		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000418360	ENST00000600888		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000498667	ENST00000368439		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000498667	ENST00000368436		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000498667	ENST00000308987		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3UTR	ENST00000498667	ENST00000471245		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-intron	ENST00000498667	ENST00000600888		TCGA	LD	LUSC	TCGA-85-A50Z-01A	EFNA3	chr1	155059945	+	CKS1B	chr1	154951273	+
intron-3CDS	ENST00000582783	ENST00000253055		TCGA	LD	LUSC	TCGA-85-A510-01A	C19orf47	chr19	40827935	-	MAP3K10	chr19	40711818	+
intron-intron	ENST00000582783	ENST00000593906		TCGA	LD	LUSC	TCGA-85-A510-01A	C19orf47	chr19	40827935	-	MAP3K10	chr19	40711818	+
intron-3CDS	ENST00000392035	ENST00000253055		TCGA	LD	LUSC	TCGA-85-A510-01A	C19orf47	chr19	40827935	-	MAP3K10	chr19	40711818	+
intron-intron	ENST00000392035	ENST00000593906		TCGA	LD	LUSC	TCGA-85-A510-01A	C19orf47	chr19	40827935	-	MAP3K10	chr19	40711818	+
5UTR-3CDS	ENST00000584868	ENST00000253055		TCGA	LD	LUSC	TCGA-85-A510-01A	C19orf47	chr19	40827935	-	MAP3K10	chr19	40711818	+
5UTR-intron	ENST00000584868	ENST00000593906		TCGA	LD	LUSC	TCGA-85-A510-01A	C19orf47	chr19	40827935	-	MAP3K10	chr19	40711818	+
In-frame	ENST00000361756	ENST00000393799		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000530427		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000393800		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000534534		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000524845		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000265637		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000524904		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000393801		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000265636		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000529710		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000361756	ENST00000527403		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
Frame-shit	ENST00000533380	ENST00000393799		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000530427		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000393800		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000534534		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000524845		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000265637		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000524904		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000393801		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000265636		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000529710		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000533380	ENST00000527403		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
Frame-shit	ENST00000393713	ENST00000393799		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000530427		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000393800		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000534534		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000524845		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000265637		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000524904		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000393801		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000265636		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000529710		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000393713	ENST00000527403		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-3CDS	ENST00000490867	ENST00000393799		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000530427		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000393800		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000534534		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000524845		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000265637		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000524904		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000393801		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000265636		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000529710		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
3UTR-intron	ENST00000490867	ENST00000527403		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-3CDS	ENST00000545854	ENST00000393799		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000530427		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000393800		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000534534		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000524845		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000265637		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000524904		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000393801		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000265636		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000529710		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5UTR-intron	ENST00000545854	ENST00000527403		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
Frame-shit	ENST00000530137	ENST00000393799		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000530427		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000393800		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000534534		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000524845		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000265637		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000524904		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000393801		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000265636		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000529710		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000530137	ENST00000527403		TCGA	LD	LUSC	TCGA-85-A511-01A	RNF121	chr11	71640170	+	PPP6R3	chr11	68334482	+
5CDS-intron	ENST00000341942	ENST00000429084		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000341942	ENST00000359593		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000341942	ENST00000478501		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-3UTR	ENST00000341942	ENST00000421755		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000341942	ENST00000422582		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000441173	ENST00000429084		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000441173	ENST00000359593		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000441173	ENST00000478501		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-3UTR	ENST00000441173	ENST00000421755		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
5CDS-intron	ENST00000441173	ENST00000422582		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
3UTR-intron	ENST00000468582	ENST00000429084		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
3UTR-intron	ENST00000468582	ENST00000359593		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
3UTR-intron	ENST00000468582	ENST00000478501		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
3UTR-3UTR	ENST00000468582	ENST00000421755		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
3UTR-intron	ENST00000468582	ENST00000422582		TCGA	LD	LUSC	TCGA-85-A53L-01A	LAMTOR4	chr7	99747188	+	AP4M1	chr7	99707814	+
Frame-shit	ENST00000358026	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000358026	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000344626	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000344626	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000429416	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000429416	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000541122	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000541122	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000589677	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000589677	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000444061	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000444061	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000590574	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000590574	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000413806	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000413806	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000450717	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
Frame-shit	ENST00000450717	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	LD	LUSC	TCGA-85-A53L-01A	SMARCA4	chr19	11123788	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000388890	ENST00000264935		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-3UTR	ENST00000388890	ENST00000444221		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-intron	ENST00000388890	ENST00000514507		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-3CDS	ENST00000323510	ENST00000264935		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-3UTR	ENST00000323510	ENST00000444221		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-intron	ENST00000323510	ENST00000514507		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
Frame-shit	ENST00000483173	ENST00000264935		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5CDS-3UTR	ENST00000483173	ENST00000444221		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5CDS-intron	ENST00000483173	ENST00000514507		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
In-frame	ENST00000467963	ENST00000264935		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5CDS-3UTR	ENST00000467963	ENST00000444221		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5CDS-intron	ENST00000467963	ENST00000514507		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5UTR-3CDS	ENST00000435709	ENST00000264935		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5UTR-3UTR	ENST00000435709	ENST00000444221		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
5UTR-intron	ENST00000435709	ENST00000514507		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-3CDS	ENST00000494422	ENST00000264935		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-3UTR	ENST00000494422	ENST00000444221		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
intron-intron	ENST00000494422	ENST00000514507		TCGA	LD	LUSC	TCGA-90-6837-01A	BRD9	chr5	891269	-	CEP72	chr5	647921	+
Frame-shit	ENST00000392325	ENST00000576599		TCGA	LD	LUSC	TCGA-90-6837-01A	WDR45B	chr17	80601825	-	B3GNTL1	chr17	80904859	-
Frame-shit	ENST00000392325	ENST00000320865		TCGA	LD	LUSC	TCGA-90-6837-01A	WDR45B	chr17	80601825	-	B3GNTL1	chr17	80904859	-
5CDS-intron	ENST00000392325	ENST00000571954		TCGA	LD	LUSC	TCGA-90-6837-01A	WDR45B	chr17	80601825	-	B3GNTL1	chr17	80904859	-
intron-3CDS	ENST00000571835	ENST00000576599		TCGA	LD	LUSC	TCGA-90-6837-01A	WDR45B	chr17	80601825	-	B3GNTL1	chr17	80904859	-
intron-3CDS	ENST00000571835	ENST00000320865		TCGA	LD	LUSC	TCGA-90-6837-01A	WDR45B	chr17	80601825	-	B3GNTL1	chr17	80904859	-
intron-intron	ENST00000571835	ENST00000571954		TCGA	LD	LUSC	TCGA-90-6837-01A	WDR45B	chr17	80601825	-	B3GNTL1	chr17	80904859	-
intron-3CDS	ENST00000282050	ENST00000302079		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000282050	ENST00000580640		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000282050	ENST00000503781		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000282050	ENST00000383408		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000282050	ENST00000538948		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000282050	ENST00000285141		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000282050	ENST00000581680		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-3CDS	ENST00000593152	ENST00000302079		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-3CDS	ENST00000593152	ENST00000580640		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-3CDS	ENST00000593152	ENST00000503781		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-intron	ENST00000593152	ENST00000383408		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-intron	ENST00000593152	ENST00000538948		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-intron	ENST00000593152	ENST00000285141		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5UTR-intron	ENST00000593152	ENST00000581680		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000590665	ENST00000302079		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000590665	ENST00000580640		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000590665	ENST00000503781		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000590665	ENST00000383408		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000590665	ENST00000538948		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000590665	ENST00000285141		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000590665	ENST00000581680		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000398752	ENST00000302079		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000398752	ENST00000580640		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000398752	ENST00000503781		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000398752	ENST00000383408		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000398752	ENST00000538948		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000398752	ENST00000285141		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000398752	ENST00000581680		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000591267	ENST00000302079		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000591267	ENST00000580640		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-3CDS	ENST00000591267	ENST00000503781		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000591267	ENST00000383408		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000591267	ENST00000538948		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000591267	ENST00000285141		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
intron-intron	ENST00000591267	ENST00000581680		TCGA	LD	LUSC	TCGA-90-7766-01A	ATP5A1	chr18	43677802	-	PIEZO2	chr18	10803992	-
5CDS-5UTR	ENST00000524189	ENST00000490268		TCGA	LD	LUSC	TCGA-90-7766-01A	KIF13B	chr8	29102863	-	ADAM3A	chr8	39313023	-
5CDS-5UTR	ENST00000521515	ENST00000490268		TCGA	LD	LUSC	TCGA-90-7766-01A	KIF13B	chr8	29102863	-	ADAM3A	chr8	39313023	-
intron-5UTR	ENST00000404075	ENST00000490268		TCGA	LD	LUSC	TCGA-90-7766-01A	KIF13B	chr8	29102863	-	ADAM3A	chr8	39313023	-
Frame-shit	ENST00000435803	ENST00000265523		TCGA	LD	LUSC	TCGA-90-7769-01A	ABCA13	chr7	48211149	+	BLVRA	chr7	43843275	+
Frame-shit	ENST00000435803	ENST00000402924		TCGA	LD	LUSC	TCGA-90-7769-01A	ABCA13	chr7	48211149	+	BLVRA	chr7	43843275	+
intron-3CDS	ENST00000544596	ENST00000265523		TCGA	LD	LUSC	TCGA-90-7769-01A	ABCA13	chr7	48211149	+	BLVRA	chr7	43843275	+
intron-3CDS	ENST00000544596	ENST00000402924		TCGA	LD	LUSC	TCGA-90-7769-01A	ABCA13	chr7	48211149	+	BLVRA	chr7	43843275	+
In-frame	ENST00000373176	ENST00000335791		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
In-frame	ENST00000373176	ENST00000343609		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
5CDS-5UTR	ENST00000373176	ENST00000495983		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
Frame-shit	ENST00000373156	ENST00000335791		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
Frame-shit	ENST00000373156	ENST00000343609		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
5CDS-5UTR	ENST00000373156	ENST00000495983		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
In-frame	ENST00000223836	ENST00000335791		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
In-frame	ENST00000223836	ENST00000343609		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
5CDS-5UTR	ENST00000223836	ENST00000495983		TCGA	LD	LUSC	TCGA-90-7769-01A	AK1	chr9	130634102	-	ST6GALNAC4	chr9	130674617	-
In-frame	ENST00000326181	ENST00000370888		TCGA	LD	LUSC	TCGA-90-A4ED-01A	TRAF7	chr16	2215937	+	LRRC1	chr6	53743791	+
In-frame	ENST00000326181	ENST00000370882		TCGA	LD	LUSC	TCGA-90-A4ED-01A	TRAF7	chr16	2215937	+	LRRC1	chr6	53743791	+
5UTR-3CDS	ENST00000308159	ENST00000332374		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
5UTR-3CDS	ENST00000308159	ENST00000569155		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
5UTR-3CDS	ENST00000569842	ENST00000332374		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
5UTR-3CDS	ENST00000569842	ENST00000569155		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
intron-3CDS	ENST00000564887	ENST00000332374		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
intron-3CDS	ENST00000564887	ENST00000569155		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
intron-3CDS	ENST00000569595	ENST00000332374		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
intron-3CDS	ENST00000569595	ENST00000569155		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
intron-3CDS	ENST00000542526	ENST00000332374		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
intron-3CDS	ENST00000542526	ENST00000569155		TCGA	LD	LUSC	TCGA-92-7340-01A	NUP93	chr16	56764123	+	MT1H	chr16	56704418	+
Frame-shit	ENST00000544600	ENST00000396024		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000544600	ENST00000451270		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000544600	ENST00000332680		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000544600	ENST00000421017		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
5CDS-5UTR	ENST00000544600	ENST00000557937		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000268122	ENST00000396024		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000268122	ENST00000451270		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000268122	ENST00000332680		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
Frame-shit	ENST00000268122	ENST00000421017		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
5CDS-5UTR	ENST00000268122	ENST00000557937		TCGA	LD	LUSC	TCGA-92-7340-01A	RHCG	chr15	90039592	-	ANXA2	chr15	60656722	-
5CDS-5UTR	ENST00000357674	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000314062	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000346964	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000419354	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
intron-5UTR	ENST00000452595	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000422288	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000448528	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
intron-5UTR	ENST00000443183	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000450955	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5CDS-5UTR	ENST00000392382	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5UTR-5UTR	ENST00000485409	ENST00000327134		TCGA	LD	LUSC	TCGA-92-7341-01A	DLG1	chr3	197009550	-	PAK2	chr3	196509497	+
5UTR-3CDS	ENST00000337530	ENST00000398805		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-3CDS	ENST00000337530	ENST00000398803		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000337530	ENST00000488101		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000337530	ENST00000262542		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000337530	ENST00000539114		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-3CDS	ENST00000374244	ENST00000398805		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-3CDS	ENST00000374244	ENST00000398803		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000374244	ENST00000488101		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000374244	ENST00000262542		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000374244	ENST00000539114		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-3CDS	ENST00000536272	ENST00000398805		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-3CDS	ENST00000536272	ENST00000398803		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000536272	ENST00000488101		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000536272	ENST00000262542		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
5UTR-intron	ENST00000536272	ENST00000539114		TCGA	LD	LUSC	TCGA-92-7341-01A	KIAA1958	chr9	115249398	+	HSDL2	chr9	115221729	+
Frame-shit	ENST00000297293	ENST00000539286		TCGA	LD	LUSC	TCGA-92-7341-01A	LMTK2	chr7	97788737	+	BRI3	chr7	97911663	+
Frame-shit	ENST00000297293	ENST00000297290		TCGA	LD	LUSC	TCGA-92-7341-01A	LMTK2	chr7	97788737	+	BRI3	chr7	97911663	+
5CDS-3UTR	ENST00000297293	ENST00000473967		TCGA	LD	LUSC	TCGA-92-7341-01A	LMTK2	chr7	97788737	+	BRI3	chr7	97911663	+
intron-3CDS	ENST00000493372	ENST00000539286		TCGA	LD	LUSC	TCGA-92-7341-01A	LMTK2	chr7	97788737	+	BRI3	chr7	97911663	+
intron-3CDS	ENST00000493372	ENST00000297290		TCGA	LD	LUSC	TCGA-92-7341-01A	LMTK2	chr7	97788737	+	BRI3	chr7	97911663	+
intron-3UTR	ENST00000493372	ENST00000473967		TCGA	LD	LUSC	TCGA-92-7341-01A	LMTK2	chr7	97788737	+	BRI3	chr7	97911663	+
Frame-shit	ENST00000337002	ENST00000283290		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
Frame-shit	ENST00000337002	ENST00000402314		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
5CDS-5UTR	ENST00000337002	ENST00000495756		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
Frame-shit	ENST00000480708	ENST00000283290		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
Frame-shit	ENST00000480708	ENST00000402314		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
5CDS-5UTR	ENST00000480708	ENST00000495756		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
3UTR-3CDS	ENST00000470355	ENST00000283290		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
3UTR-3CDS	ENST00000470355	ENST00000402314		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
3UTR-5UTR	ENST00000470355	ENST00000495756		TCGA	LD	LUSC	TCGA-92-7341-01A	SEC62	chr3	169703653	+	ATG3	chr3	112272176	-
intron-3CDS	ENST00000350881	ENST00000401642		TCGA	LD	LUSC	TCGA-92-7341-01A	THBS4	chr5	79287235	+	SCFD2	chr4	54011749	-
intron-3CDS	ENST00000350881	ENST00000388940		TCGA	LD	LUSC	TCGA-92-7341-01A	THBS4	chr5	79287235	+	SCFD2	chr4	54011749	-
intron-3CDS	ENST00000511733	ENST00000401642		TCGA	LD	LUSC	TCGA-92-7341-01A	THBS4	chr5	79287235	+	SCFD2	chr4	54011749	-
intron-3CDS	ENST00000511733	ENST00000388940		TCGA	LD	LUSC	TCGA-92-7341-01A	THBS4	chr5	79287235	+	SCFD2	chr4	54011749	-
intron-3CDS	ENST00000504720	ENST00000401642		TCGA	LD	LUSC	TCGA-92-7341-01A	THBS4	chr5	79287235	+	SCFD2	chr4	54011749	-
intron-3CDS	ENST00000504720	ENST00000388940		TCGA	LD	LUSC	TCGA-92-7341-01A	THBS4	chr5	79287235	+	SCFD2	chr4	54011749	-
intron-3CDS	ENST00000322147	ENST00000182290		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000322147	ENST00000483227		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000322147	ENST00000381121		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000322147	ENST00000451520		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-3CDS	ENST00000301873	ENST00000182290		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000301873	ENST00000483227		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000301873	ENST00000381121		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000301873	ENST00000451520		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-3CDS	ENST00000530785	ENST00000182290		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000530785	ENST00000483227		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000530785	ENST00000381121		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000530785	ENST00000451520		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-3CDS	ENST00000529189	ENST00000182290		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000529189	ENST00000483227		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000529189	ENST00000381121		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000529189	ENST00000451520		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-3CDS	ENST00000532932	ENST00000182290		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000532932	ENST00000483227		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000532932	ENST00000381121		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000532932	ENST00000451520		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-3CDS	ENST00000536982	ENST00000182290		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000536982	ENST00000483227		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000536982	ENST00000381121		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
intron-intron	ENST00000536982	ENST00000451520		TCGA	LD	LUSC	TCGA-92-8065-01A	LTBP3	chr11	65306430	-	TSPAN32	chr11	2338629	+
5CDS-5UTR	ENST00000359650	ENST00000368708		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000359650	ENST00000487430		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-intron	ENST00000359650	ENST00000497140		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000359650	ENST00000368710		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000359650	ENST00000368709		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000359650	ENST00000368707		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000368739	ENST00000368708		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000368739	ENST00000487430		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-intron	ENST00000368739	ENST00000497140		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000368739	ENST00000368710		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000368739	ENST00000368709		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000368739	ENST00000368707		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000490266	ENST00000368708		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000490266	ENST00000487430		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
intron-intron	ENST00000490266	ENST00000497140		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000490266	ENST00000368710		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000490266	ENST00000368709		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
intron-5UTR	ENST00000490266	ENST00000368707		TCGA	LD	LUSC	TCGA-92-8065-01A	PGLYRP4	chr1	153309657	-	S100A2	chr1	153536363	-
In-frame	ENST00000368729	ENST00000368738		TCGA	LD	LUSC	TCGA-92-8065-01A	S100A7A	chr1	153390699	+	S100A9	chr1	153333120	+
In-frame	ENST00000368728	ENST00000368738		TCGA	LD	LUSC	TCGA-92-8065-01A	S100A7A	chr1	153390699	+	S100A9	chr1	153333120	+
In-frame	ENST00000329256	ENST00000368738		TCGA	LD	LUSC	TCGA-92-8065-01A	S100A7A	chr1	153390699	+	S100A9	chr1	153333120	+
5CDS-intron	ENST00000373825	ENST00000521277		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000521737		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000336977		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000407272		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000517392		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000521522		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000519095		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000368968		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000368970		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000520883		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000523787		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373825	ENST00000359793		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000521277		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000521737		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000336977		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000407272		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000517392		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000521522		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000519095		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000368968		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000368970		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000520883		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000523787		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000423325	ENST00000359793		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000521277		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000521737		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000336977		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000407272		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000517392		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000521522		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000519095		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000368968		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000368970		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000520883		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000523787		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000373822	ENST00000359793		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000521277		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000521737		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000336977		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000407272		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000517392		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000521522		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000519095		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000368968		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000368970		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000520883		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000523787		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
intron-intron	ENST00000373821	ENST00000359793		TCGA	LD	LUSC	TCGA-94-7033-01A	SRPK1	chr6	35810312	-	CEP57L1	chr6	109481775	+
5CDS-intron	ENST00000607778	ENST00000392185		TCGA	LD	LUSC	TCGA-94-7557-01A	GTF2H5	chr6	158591570	+	SNX9	chr6	158187417	+
intron-3CDS	ENST00000358794	ENST00000356341		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000358794	ENST00000530617		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000358794	ENST00000278568		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000358794	ENST00000528203		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-5UTR	ENST00000358794	ENST00000525542		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000305218	ENST00000356341		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000305218	ENST00000530617		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000305218	ENST00000278568		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000305218	ENST00000528203		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
5CDS-5UTR	ENST00000305218	ENST00000525542		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000538945	ENST00000356341		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000538945	ENST00000530617		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000538945	ENST00000278568		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000538945	ENST00000528203		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
5CDS-5UTR	ENST00000538945	ENST00000525542		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000543847	ENST00000356341		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000543847	ENST00000530617		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000543847	ENST00000278568		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000543847	ENST00000528203		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
5CDS-5UTR	ENST00000543847	ENST00000525542		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000540501	ENST00000356341		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000540501	ENST00000530617		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000540501	ENST00000278568		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-3CDS	ENST00000540501	ENST00000528203		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
intron-5UTR	ENST00000540501	ENST00000525542		TCGA	LD	LUSC	TCGA-94-7557-01A	STIP1	chr11	63953742	+	PAK1	chr11	77043912	-
In-frame	ENST00000359154	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
5CDS-intron	ENST00000359154	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
In-frame	ENST00000448661	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
5CDS-intron	ENST00000448661	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
In-frame	ENST00000569174	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
5CDS-intron	ENST00000569174	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
In-frame	ENST00000356003	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
5CDS-intron	ENST00000356003	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
3UTR-3CDS	ENST00000544162	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
3UTR-intron	ENST00000544162	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
In-frame	ENST00000542271	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
5CDS-intron	ENST00000542271	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
intron-3CDS	ENST00000568684	ENST00000261778		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
intron-intron	ENST00000568684	ENST00000561931		TCGA	LD	LUSC	TCGA-94-7557-01A	WWP2	chr16	69922152	+	TANGO6	chr16	68936231	+
In-frame	ENST00000294053	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000294053	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000294053	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538039	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000538039	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000437826	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000437826	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000340729	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000340729	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000543042	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000543042	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000445069	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-intron	ENST00000445069	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
In-frame	ENST00000538021	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
5CDS-intron	ENST00000538021	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000311172		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000409314		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000409418		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000458644		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-3CDS	ENST00000542555	ENST00000409853		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
intron-intron	ENST00000542555	ENST00000409263		TCGA	LD	LUSC	TCGA-94-7943-01A	CLPB	chr11	72005664	-	FCHSD2	chr11	72613683	-
Frame-shit	ENST00000309295	ENST00000317568		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000309295	ENST00000531296		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000309295	ENST00000355991		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
5CDS-intron	ENST00000309295	ENST00000416776		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-3CDS	ENST00000529596	ENST00000317568		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000529596	ENST00000531296		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000529596	ENST00000355991		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000529596	ENST00000416776		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-3CDS	ENST00000533364	ENST00000317568		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000533364	ENST00000531296		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000533364	ENST00000355991		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
intron-intron	ENST00000533364	ENST00000416776		TCGA	LD	LUSC	TCGA-94-7943-01A	EHBP1L1	chr11	65353062	+	FRMD8	chr11	65178713	+
Frame-shit	ENST00000221130	ENST00000286149		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
In-frame	ENST00000221130	ENST00000388958		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
In-frame	ENST00000221130	ENST00000388956		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
Frame-shit	ENST00000221130	ENST00000388957		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
5CDS-intron	ENST00000221130	ENST00000569064		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
Frame-shit	ENST00000414019	ENST00000286149		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
In-frame	ENST00000414019	ENST00000388958		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
In-frame	ENST00000414019	ENST00000388956		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
Frame-shit	ENST00000414019	ENST00000388957		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
5CDS-intron	ENST00000414019	ENST00000569064		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000546342	ENST00000286149		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000546342	ENST00000388958		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000546342	ENST00000388956		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000546342	ENST00000388957		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-intron	ENST00000546342	ENST00000569064		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000537535	ENST00000286149		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000537535	ENST00000388958		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000537535	ENST00000388956		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-3CDS	ENST00000537535	ENST00000388957		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
intron-intron	ENST00000537535	ENST00000569064		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
Frame-shit	ENST00000541648	ENST00000286149		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
In-frame	ENST00000541648	ENST00000388958		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
In-frame	ENST00000541648	ENST00000388956		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
Frame-shit	ENST00000541648	ENST00000388957		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
5CDS-intron	ENST00000541648	ENST00000569064		TCGA	LD	LUSC	TCGA-94-7943-01A	GSR	chr8	30550486	-	OTOA	chr16	21771791	+
5UTR-3CDS	ENST00000367635	ENST00000448150		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-3CDS	ENST00000367635	ENST00000367649		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-intron	ENST00000367635	ENST00000465723		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-intron	ENST00000367635	ENST00000462775		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-3CDS	ENST00000367634	ENST00000448150		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-3CDS	ENST00000367634	ENST00000367649		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-intron	ENST00000367634	ENST00000465723		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
5UTR-intron	ENST00000367634	ENST00000462775		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
intron-3CDS	ENST00000477383	ENST00000448150		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
intron-3CDS	ENST00000477383	ENST00000367649		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
intron-intron	ENST00000477383	ENST00000465723		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
intron-intron	ENST00000477383	ENST00000462775		TCGA	LD	LUSC	TCGA-94-7943-01A	RALGPS2	chr1	178694554	+	RASAL2	chr1	178389646	+
In-frame	ENST00000448637	ENST00000337002		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
In-frame	ENST00000448637	ENST00000480708		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
5CDS-intron	ENST00000448637	ENST00000470355		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
In-frame	ENST00000312675	ENST00000337002		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
In-frame	ENST00000312675	ENST00000480708		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
5CDS-intron	ENST00000312675	ENST00000470355		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
In-frame	ENST00000543006	ENST00000337002		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
In-frame	ENST00000543006	ENST00000480708		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
5CDS-intron	ENST00000543006	ENST00000470355		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
3UTR-3CDS	ENST00000471917	ENST00000337002		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
3UTR-3CDS	ENST00000471917	ENST00000480708		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
3UTR-intron	ENST00000471917	ENST00000470355		TCGA	LD	LUSC	TCGA-94-8035-01A	LPP	chr3	188327632	+	SEC62	chr3	169693396	+
5CDS-5UTR	ENST00000315467	ENST00000534142		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-5UTR	ENST00000315467	ENST00000533478		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-5UTR	ENST00000315467	ENST00000525539		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-intron	ENST00000315467	ENST00000531391		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-intron	ENST00000315467	ENST00000337114		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-intron	ENST00000315467	ENST00000527937		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-5UTR	ENST00000566566	ENST00000534142		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-5UTR	ENST00000566566	ENST00000533478		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-5UTR	ENST00000566566	ENST00000525539		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-intron	ENST00000566566	ENST00000531391		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-intron	ENST00000566566	ENST00000337114		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
5CDS-intron	ENST00000566566	ENST00000527937		TCGA	LD	LUSC	TCGA-94-8490-01A	GCSH	chr16	81129736	-	PKD1L2	chr16	81157389	-
intron-intron	ENST00000264434	ENST00000037869		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
intron-intron	ENST00000264434	ENST00000450256		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
intron-intron	ENST00000264434	ENST00000430566		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
intron-intron	ENST00000420306	ENST00000037869		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
intron-intron	ENST00000420306	ENST00000450256		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
intron-intron	ENST00000420306	ENST00000430566		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
5UTR-intron	ENST00000470096	ENST00000037869		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
5UTR-intron	ENST00000470096	ENST00000450256		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
5UTR-intron	ENST00000470096	ENST00000430566		TCGA	LD	LUSC	TCGA-94-8491-01A	C2orf42	chr2	70475537	-	FAM136A	chr2	70528735	-
3UTR-3CDS	ENST00000446912	ENST00000447857		TCGA	LD	LUSC	TCGA-94-8491-01A	FAM157B	chr9	141121553	+	CCDC155	chr19	49897733	+
3UTR-intron	ENST00000446912	ENST00000593725		TCGA	LD	LUSC	TCGA-94-8491-01A	FAM157B	chr9	141121553	+	CCDC155	chr19	49897733	+
5UTR-3CDS	ENST00000431726	ENST00000358470		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
5UTR-3CDS	ENST00000431726	ENST00000392320		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
5UTR-intron	ENST00000431726	ENST00000470708		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
5UTR-intron	ENST00000431726	ENST00000409995		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
In-frame	ENST00000265562	ENST00000358470		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
In-frame	ENST00000265562	ENST00000392320		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
5CDS-intron	ENST00000265562	ENST00000470708		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
5CDS-intron	ENST00000265562	ENST00000409995		TCGA	LD	LUSC	TCGA-94-8491-01A	PTPN23	chr3	47422670	+	STAT4	chr2	191941051	-
5CDS-intron	ENST00000344063	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000344063	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000344063	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000344063	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000431533	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000431533	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000431533	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000431533	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000428193	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000428193	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000428193	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000428193	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558815	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558815	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558815	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558815	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560583	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560583	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560583	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560583	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560055	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560055	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560055	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000560055	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000559463	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000559463	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000559463	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000559463	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558131	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558131	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558131	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558131	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558752	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558752	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558752	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000558752	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000458349	ENST00000405402		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000458349	ENST00000253458		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000458349	ENST00000393243		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000458349	ENST00000471070		TCGA	LD	LUSC	TCGA-94-8491-01A	RPL28	chr19	55897806	+	GSE1	chr16	85391069	+
5CDS-intron	ENST00000358794	ENST00000398983		TCGA	LD	LUSC	TCGA-94-8491-01A	STIP1	chr11	63965446	+	MS4A18	chr11	60496777	+
5CDS-intron	ENST00000305218	ENST00000398983		TCGA	LD	LUSC	TCGA-94-8491-01A	STIP1	chr11	63965446	+	MS4A18	chr11	60496777	+
5CDS-intron	ENST00000538945	ENST00000398983		TCGA	LD	LUSC	TCGA-94-8491-01A	STIP1	chr11	63965446	+	MS4A18	chr11	60496777	+
intron-intron	ENST00000543847	ENST00000398983		TCGA	LD	LUSC	TCGA-94-8491-01A	STIP1	chr11	63965446	+	MS4A18	chr11	60496777	+
intron-intron	ENST00000540501	ENST00000398983		TCGA	LD	LUSC	TCGA-94-8491-01A	STIP1	chr11	63965446	+	MS4A18	chr11	60496777	+
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	LUSC	TCGA-94-A4VJ-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000485511	ENST00000314073		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
In-frame	ENST00000485511	ENST00000394168		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
In-frame	ENST00000394110	ENST00000314073		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
In-frame	ENST00000394110	ENST00000394168		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
In-frame	ENST00000472118	ENST00000314073		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
In-frame	ENST00000472118	ENST00000394168		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
intron-3CDS	ENST00000461010	ENST00000314073		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
intron-3CDS	ENST00000461010	ENST00000394168		TCGA	LD	LUSC	TCGA-96-7544-01A	PPP2R5D	chr6	42957426	+	GLTSCR1L	chr6	42819830	+
5CDS-intron	ENST00000319023	ENST00000441339		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000319023	ENST00000308946		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000319023	ENST00000535407		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
5CDS-3UTR	ENST00000319023	ENST00000541137		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000539574	ENST00000441339		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000539574	ENST00000308946		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000539574	ENST00000535407		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000539574	ENST00000541137		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000530055	ENST00000441339		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000530055	ENST00000308946		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000530055	ENST00000535407		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000530055	ENST00000541137		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000526039	ENST00000441339		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000526039	ENST00000308946		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-intron	ENST00000526039	ENST00000535407		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
intron-3UTR	ENST00000526039	ENST00000541137		TCGA	LD	LUSC	TCGA-96-8169-01A	NADSYN1	chr11	71175188	+	MYEOV	chr11	69156278	+
5UTR-3CDS	ENST00000426496	ENST00000367750		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-intron	ENST00000426496	ENST00000402921		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000426496	ENST00000469112		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000426496	ENST00000354841		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3CDS	ENST00000392078	ENST00000367750		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-intron	ENST00000392078	ENST00000402921		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000392078	ENST00000469112		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000392078	ENST00000354841		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
3UTR-3CDS	ENST00000476522	ENST00000367750		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
3UTR-intron	ENST00000476522	ENST00000402921		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
3UTR-3UTR	ENST00000476522	ENST00000469112		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
3UTR-3UTR	ENST00000476522	ENST00000354841		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3CDS	ENST00000367742	ENST00000367750		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-intron	ENST00000367742	ENST00000402921		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000367742	ENST00000469112		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000367742	ENST00000354841		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3CDS	ENST00000338920	ENST00000367750		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-intron	ENST00000338920	ENST00000402921		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000338920	ENST00000469112		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
5UTR-3UTR	ENST00000338920	ENST00000354841		TCGA	LD	LUSC	TCGA-96-8169-01A	PRRC2C	chr1	171454874	+	FMO1	chr1	171236682	+
intron-3CDS	ENST00000380243	ENST00000390547		TCGA	LD	LUSC	TCGA-96-8170-01A	CCDC85C	chr14	99975660	-	IGHA1	chr14	106175002	-
intron-3CDS	ENST00000557769	ENST00000390547		TCGA	LD	LUSC	TCGA-96-8170-01A	CCDC85C	chr14	99975660	-	IGHA1	chr14	106175002	-
intron-3CDS	ENST00000555822	ENST00000390547		TCGA	LD	LUSC	TCGA-96-8170-01A	CCDC85C	chr14	99975660	-	IGHA1	chr14	106175002	-
In-frame	ENST00000350721	ENST00000264951		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
In-frame	ENST00000350721	ENST00000392981		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
5CDS-intron	ENST00000350721	ENST00000463916		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
5CDS-intron	ENST00000350721	ENST00000544157		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
5CDS-intron	ENST00000350721	ENST00000465074		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
In-frame	ENST00000383101	ENST00000264951		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
In-frame	ENST00000383101	ENST00000392981		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
5CDS-intron	ENST00000383101	ENST00000463916		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
5CDS-intron	ENST00000383101	ENST00000544157		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
5CDS-intron	ENST00000383101	ENST00000465074		TCGA	LD	LUSC	TCGA-96-A4JK-01A	ATR	chr3	142253922	-	XRN1	chr3	142123918	-
intron-3CDS	ENST00000282041	ENST00000390565		TCGA	LD	LUSC	TCGA-96-A4JL-01A	EPG5	chr18	43431665	-	IGHJ1	chr14	106331662	-
intron-3CDS	ENST00000585906	ENST00000390565		TCGA	LD	LUSC	TCGA-96-A4JL-01A	EPG5	chr18	43431665	-	IGHJ1	chr14	106331662	-
intron-3CDS	ENST00000268489	ENST00000359154		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000268489	ENST00000448661		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000268489	ENST00000569174		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000268489	ENST00000356003		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3UTR	ENST00000268489	ENST00000544162		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-5UTR	ENST00000268489	ENST00000542271		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-intron	ENST00000268489	ENST00000568684		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000397992	ENST00000359154		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000397992	ENST00000448661		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000397992	ENST00000569174		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-3CDS	ENST00000397992	ENST00000356003		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-3UTR	ENST00000397992	ENST00000544162		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-5UTR	ENST00000397992	ENST00000542271		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
5UTR-intron	ENST00000397992	ENST00000568684		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000359154		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000448661		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000569174		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3CDS	ENST00000558842	ENST00000356003		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-3UTR	ENST00000558842	ENST00000544162		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-5UTR	ENST00000558842	ENST00000542271		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
intron-intron	ENST00000558842	ENST00000568684		TCGA	LD	LUSC	TCGA-96-A4JL-01A	ZFHX3	chr16	73092429	-	WWP2	chr16	69874029	+
In-frame	ENST00000281038	ENST00000299626		TCGA	LD	LUSC	TCGA-98-8020-01A	NARS2	chr11	78270585	-	ALG8	chr11	77825438	-
In-frame	ENST00000281038	ENST00000376156		TCGA	LD	LUSC	TCGA-98-8020-01A	NARS2	chr11	78270585	-	ALG8	chr11	77825438	-
5CDS-intron	ENST00000281038	ENST00000532552		TCGA	LD	LUSC	TCGA-98-8020-01A	NARS2	chr11	78270585	-	ALG8	chr11	77825438	-
5UTR-3CDS	ENST00000528850	ENST00000299626		TCGA	LD	LUSC	TCGA-98-8020-01A	NARS2	chr11	78270585	-	ALG8	chr11	77825438	-
5UTR-3CDS	ENST00000528850	ENST00000376156		TCGA	LD	LUSC	TCGA-98-8020-01A	NARS2	chr11	78270585	-	ALG8	chr11	77825438	-
5UTR-intron	ENST00000528850	ENST00000532552		TCGA	LD	LUSC	TCGA-98-8020-01A	NARS2	chr11	78270585	-	ALG8	chr11	77825438	-
Frame-shit	ENST00000382199	ENST00000169298		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000382199	ENST00000457772		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000382199	ENST00000448044		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
5CDS-intron	ENST00000382199	ENST00000487031		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000421047	ENST00000169298		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000421047	ENST00000457772		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000421047	ENST00000448044		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-intron	ENST00000421047	ENST00000487031		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000457616	ENST00000169298		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000457616	ENST00000457772		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000457616	ENST00000448044		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
5CDS-intron	ENST00000457616	ENST00000487031		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000346192	ENST00000169298		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000346192	ENST00000457772		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
Frame-shit	ENST00000346192	ENST00000448044		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
5CDS-intron	ENST00000346192	ENST00000487031		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000494906	ENST00000169298		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000494906	ENST00000457772		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-3CDS	ENST00000494906	ENST00000448044		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
intron-intron	ENST00000494906	ENST00000487031		TCGA	LD	LUSC	TCGA-98-8021-01A	IGF2BP2	chr3	185540941	-	ST6GAL1	chr3	186790637	+
5CDS-intron	ENST00000443756	ENST00000474476		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000443756	ENST00000371218		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000443756	ENST00000303721		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000443756	ENST00000371212		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000443756	ENST00000371210		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
3UTR-intron	ENST00000545132	ENST00000474476		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
3UTR-intron	ENST00000545132	ENST00000371218		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
3UTR-intron	ENST00000545132	ENST00000303721		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
3UTR-intron	ENST00000545132	ENST00000371212		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
3UTR-intron	ENST00000545132	ENST00000371210		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000294353	ENST00000474476		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000294353	ENST00000371218		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000294353	ENST00000303721		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000294353	ENST00000371212		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
5CDS-intron	ENST00000294353	ENST00000371210		TCGA	LD	LUSC	TCGA-98-8022-01A	ZYG11B	chr1	53282301	+	FGGY	chr1	60232862	+
In-frame	ENST00000202028	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000202028	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000202028	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373950	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373950	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373950	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000441639	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000441639	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000441639	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373946	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373946	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373946	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000338074	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000338074	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000338074	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373941	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373941	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000373941	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000479336	ENST00000373973		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000479336	ENST00000349339		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
In-frame	ENST00000479336	ENST00000538900		TCGA	LD	LUSC	TCGA-98-A538-01A	EPB41L1	chr20	34800298	+	CNBD2	chr20	34582960	+
Frame-shit	ENST00000381061	ENST00000339464		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000381061	ENST00000409496		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000381061	ENST00000410089		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000381061	ENST00000410058		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000252934	ENST00000339464		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000252934	ENST00000409496		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000252934	ENST00000410089		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
Frame-shit	ENST00000252934	ENST00000410058		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000498009	ENST00000339464		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000498009	ENST00000409496		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000498009	ENST00000410089		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000498009	ENST00000410058		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000402380	ENST00000339464		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000402380	ENST00000409496		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000402380	ENST00000410089		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
intron-3CDS	ENST00000402380	ENST00000410058		TCGA	LD	LUSC	TCGA-98-A539-01A	ATXN10	chr22	46136418	+	WNT7B	chr22	46346026	-
5CDS-intron	ENST00000542979	ENST00000302079		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000542979	ENST00000580640		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000542979	ENST00000503781		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000542979	ENST00000383408		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000542979	ENST00000538948		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000542979	ENST00000285141		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000542979	ENST00000581680		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000302079		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000580640		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000503781		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000383408		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000538948		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000285141		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
5CDS-intron	ENST00000322897	ENST00000581680		TCGA	LD	LUSC	TCGA-98-A53A-01A	NAPG	chr18	10534493	+	PIEZO2	chr18	10682289	-
intron-3CDS	ENST00000397063	ENST00000367282		TCGA	LD	LUSC	TCGA-98-A53A-01A	NFE2L2	chr2	178129260	-	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000397062	ENST00000367282		TCGA	LD	LUSC	TCGA-98-A53A-01A	NFE2L2	chr2	178129260	-	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000446151	ENST00000367282		TCGA	LD	LUSC	TCGA-98-A53A-01A	NFE2L2	chr2	178129260	-	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000464747	ENST00000367282		TCGA	LD	LUSC	TCGA-98-A53A-01A	NFE2L2	chr2	178129260	-	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000423513	ENST00000367282		TCGA	LD	LUSC	TCGA-98-A53A-01A	NFE2L2	chr2	178129260	-	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000261854	ENST00000327536		TCGA	LD	LUSC	TCGA-98-A53A-01A	SPPL2A	chr15	51028298	-	TNFAIP8L3	chr15	51350640	-
intron-3CDS	ENST00000559293	ENST00000327536		TCGA	LD	LUSC	TCGA-98-A53A-01A	SPPL2A	chr15	51028298	-	TNFAIP8L3	chr15	51350640	-
In-frame	ENST00000525566	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000525566	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000525566	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000429002	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000429002	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000429002	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000503506	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000503506	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000503506	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000526691	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000526691	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000526691	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000388854	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000388854	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000388854	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000354940	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000354940	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000354940	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000526390	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000526390	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000526390	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000529546	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000529546	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000529546	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000540716	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000540716	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000540716	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000524698	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000524698	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000524698	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000542918	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000542918	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000542918	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000378070	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000378070	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000378070	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000397736	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000397736	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000397736	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000427956	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000427956	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000427956	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000526950	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
In-frame	ENST00000526950	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000526950	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
intron-3CDS	ENST00000526006	ENST00000499666		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
intron-3CDS	ENST00000526006	ENST00000226522		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
intron-5UTR	ENST00000526006	ENST00000515100		TCGA	LD	LUSC	TCGA-98-A53A-01A	TXNRD1	chr12	104707095	+	LAMTOR3	chr4	100803224	-
5CDS-5UTR	ENST00000258399	ENST00000474063		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-intron	ENST00000258399	ENST00000423123		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-5UTR	ENST00000454775	ENST00000474063		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-intron	ENST00000454775	ENST00000423123		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-5UTR	ENST00000415516	ENST00000474063		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-intron	ENST00000415516	ENST00000423123		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-5UTR	ENST00000418019	ENST00000474063		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-intron	ENST00000418019	ENST00000423123		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-5UTR	ENST00000338465	ENST00000474063		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
5CDS-intron	ENST00000338465	ENST00000423123		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
intron-5UTR	ENST00000475553	ENST00000474063		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
intron-intron	ENST00000475553	ENST00000423123		TCGA	LD	LUSC	TCGA-98-A53A-01A	USP37	chr2	219394679	-	DIRC3	chr2	218298839	-
Frame-shit	ENST00000446450	ENST00000367069		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000446450	ENST00000607398		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000446450	ENST00000449822		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000446450	ENST00000297262		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000446450	ENST00000252655		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
Frame-shit	ENST00000354956	ENST00000367069		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354956	ENST00000607398		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354956	ENST00000449822		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354956	ENST00000297262		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354956	ENST00000252655		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
Frame-shit	ENST00000354449	ENST00000367069		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354449	ENST00000607398		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354449	ENST00000449822		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354449	ENST00000297262		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-intron	ENST00000354449	ENST00000252655		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
3UTR-3CDS	ENST00000469654	ENST00000367069		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
3UTR-intron	ENST00000469654	ENST00000607398		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
3UTR-intron	ENST00000469654	ENST00000449822		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
3UTR-intron	ENST00000469654	ENST00000297262		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
3UTR-intron	ENST00000469654	ENST00000252655		TCGA	LD	LUSC	TCGA-98-A53B-01A	ATG7	chr3	11340890	+	RSPH3	chr6	159403720	-
5CDS-5UTR	ENST00000412504	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000412504	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000072516	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000072516	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000443369	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000443369	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000439062	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000439062	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000447382	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000447382	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000422485	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000422485	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
intron-5UTR	ENST00000434491	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
intron-5UTR	ENST00000434491	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000422940	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000422940	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000317757	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
5CDS-5UTR	ENST00000317757	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
intron-5UTR	ENST00000465496	ENST00000265379		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
intron-5UTR	ENST00000465496	ENST00000432398		TCGA	LD	LUSC	TCGA-98-A53B-01A	IL1RAP	chr3	190282142	+	COL6A5	chr3	130092454	+
Frame-shit	ENST00000406337	ENST00000438528		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000406337	ENST00000417410		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000406337	ENST00000414154		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000406337	ENST00000529505		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000406337	ENST00000416469		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000406337	ENST00000490331		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000265713	ENST00000438528		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000265713	ENST00000417410		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000265713	ENST00000414154		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000265713	ENST00000529505		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000265713	ENST00000416469		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000265713	ENST00000490331		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000396930	ENST00000438528		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000396930	ENST00000417410		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000396930	ENST00000414154		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000396930	ENST00000529505		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000396930	ENST00000416469		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000396930	ENST00000490331		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000485568	ENST00000438528		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000485568	ENST00000417410		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
Frame-shit	ENST00000485568	ENST00000414154		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000485568	ENST00000529505		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000485568	ENST00000416469		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-intron	ENST00000485568	ENST00000490331		TCGA	LD	LUSC	TCGA-98-A53B-01A	KAT6A	chr8	41905896	-	SMIM19	chr8	42403799	+
5CDS-5UTR	ENST00000369110	ENST00000254765		TCGA	LD	LUSC	TCGA-98-A53B-01A	PREP	chr6	105845728	-	POPDC3	chr6	105610035	-
5CDS-5UTR	ENST00000369110	ENST00000474760		TCGA	LD	LUSC	TCGA-98-A53B-01A	PREP	chr6	105845728	-	POPDC3	chr6	105610035	-
Frame-shit	ENST00000260649	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000260649	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000260649	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000260649	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
5CDS-3UTR	ENST00000260649	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409387	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409387	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409387	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409387	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
5CDS-3UTR	ENST00000409387	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000410056	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000410056	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000410056	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000410056	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
5CDS-3UTR	ENST00000410056	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409741	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409741	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409741	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409741	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
5CDS-3UTR	ENST00000409741	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409229	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409229	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409229	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409229	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
5CDS-3UTR	ENST00000409229	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409380	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409380	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409380	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
Frame-shit	ENST00000409380	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
5CDS-3UTR	ENST00000409380	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409294	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409294	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409294	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409294	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3UTR	ENST00000409294	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409740	ENST00000402247		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409740	ENST00000407131		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409740	ENST00000378494		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3CDS	ENST00000409740	ENST00000403853		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
intron-3UTR	ENST00000409740	ENST00000477623		TCGA	LD	LUSC	TCGA-98-A53B-01A	SLC3A1	chr2	44513296	+	CAMKMT	chr2	44617380	+
In-frame	ENST00000434316	ENST00000283550		TCGA	LD	LUSC	TCGA-98-A53C-01A	TMCO3	chr13	114164739	+	SPACA7	chr13	113047335	+
5CDS-intron	ENST00000434316	ENST00000375699		TCGA	LD	LUSC	TCGA-98-A53C-01A	TMCO3	chr13	114164739	+	SPACA7	chr13	113047335	+
In-frame	ENST00000375391	ENST00000283550		TCGA	LD	LUSC	TCGA-98-A53C-01A	TMCO3	chr13	114164739	+	SPACA7	chr13	113047335	+
5CDS-intron	ENST00000375391	ENST00000375699		TCGA	LD	LUSC	TCGA-98-A53C-01A	TMCO3	chr13	114164739	+	SPACA7	chr13	113047335	+
3UTR-3CDS	ENST00000474393	ENST00000283550		TCGA	LD	LUSC	TCGA-98-A53C-01A	TMCO3	chr13	114164739	+	SPACA7	chr13	113047335	+
3UTR-intron	ENST00000474393	ENST00000375699		TCGA	LD	LUSC	TCGA-98-A53C-01A	TMCO3	chr13	114164739	+	SPACA7	chr13	113047335	+
Frame-shit	ENST00000429029	ENST00000366667		TCGA	LD	LUSC	TCGA-98-A53H-01A	DNAJB6	chr7	157178305	+	AGT	chr1	230841946	-
In-frame	ENST00000262177	ENST00000366667		TCGA	LD	LUSC	TCGA-98-A53H-01A	DNAJB6	chr7	157178305	+	AGT	chr1	230841946	-
In-frame	ENST00000452797	ENST00000366667		TCGA	LD	LUSC	TCGA-98-A53H-01A	DNAJB6	chr7	157178305	+	AGT	chr1	230841946	-
intron-3CDS	ENST00000443280	ENST00000366667		TCGA	LD	LUSC	TCGA-98-A53H-01A	DNAJB6	chr7	157178305	+	AGT	chr1	230841946	-
intron-3CDS	ENST00000494267	ENST00000366667		TCGA	LD	LUSC	TCGA-98-A53H-01A	DNAJB6	chr7	157178305	+	AGT	chr1	230841946	-
intron-3CDS	ENST00000308677	ENST00000263382		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000308677	ENST00000592798		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000308677	ENST00000474890		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000350356	ENST00000263382		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000350356	ENST00000592798		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000350356	ENST00000474890		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000590853	ENST00000263382		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000590853	ENST00000592798		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000590853	ENST00000474890		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000589994	ENST00000263382		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000589994	ENST00000592798		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000589994	ENST00000474890		TCGA	LD	LUSC	TCGA-98-A53I-01A	PRKACA	chr19	14203948	-	ASF1B	chr19	14237050	-
5CDS-intron	ENST00000409261	ENST00000409359		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000326016		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000392953		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000428230		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000525839		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000409303		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000355771		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409261	ENST00000439368		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000409359		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000326016		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000392953		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000428230		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000525839		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000409303		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000355771		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000409213	ENST00000439368		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000409359		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000326016		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000392953		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000428230		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000525839		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000409303		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000355771		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000405974	ENST00000439368		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000409359		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000326016		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000392953		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000428230		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000525839		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000409303		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000355771		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-intron	ENST00000317721	ENST00000439368		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000409359		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000326016		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000392953		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000428230		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000525839		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000409303		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000355771		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
intron-intron	ENST00000473859	ENST00000439368		TCGA	LD	LUSC	TCGA-J1-A4AH-01A	NCKAP5	chr2	134275029	-	ARHGEF4	chr2	131785518	+
5CDS-5UTR	ENST00000311669	ENST00000542334		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5CDS-5UTR	ENST00000311669	ENST00000268057		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5CDS-5UTR	ENST00000311669	ENST00000539603		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5CDS-5UTR	ENST00000311669	ENST00000395205		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5CDS-3UTR	ENST00000311669	ENST00000564239		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
intron-5UTR	ENST00000456471	ENST00000542334		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
intron-5UTR	ENST00000456471	ENST00000268057		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
intron-5UTR	ENST00000456471	ENST00000539603		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
intron-5UTR	ENST00000456471	ENST00000395205		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
intron-3UTR	ENST00000456471	ENST00000564239		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5UTR-5UTR	ENST00000567733	ENST00000542334		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5UTR-5UTR	ENST00000567733	ENST00000268057		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5UTR-5UTR	ENST00000567733	ENST00000539603		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5UTR-5UTR	ENST00000567733	ENST00000395205		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5UTR-3UTR	ENST00000567733	ENST00000564239		TCGA	LD	LUSC	TCGA-L3-A524-01A	ADPGK	chr15	73052748	-	BBS4	chr15	73015135	+
5UTR-intron	ENST00000543523	ENST00000546323		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
5UTR-intron	ENST00000543523	ENST00000536503		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
5UTR-intron	ENST00000543523	ENST00000282892		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
5UTR-intron	ENST00000281172	ENST00000546323		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
5UTR-intron	ENST00000281172	ENST00000536503		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
5UTR-intron	ENST00000281172	ENST00000282892		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000543612	ENST00000546323		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000543612	ENST00000536503		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000543612	ENST00000282892		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000540613	ENST00000546323		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000540613	ENST00000536503		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000540613	ENST00000282892		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000542903	ENST00000546323		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000542903	ENST00000536503		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000542903	ENST00000282892		TCGA	LD	LUSC	TCGA-L3-A524-01A	EPS8	chr12	15942095	-	MED21	chr12	27199087	+
intron-intron	ENST00000368026	ENST00000468311		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000368026	ENST00000368010		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000289779	ENST00000468311		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000289779	ENST00000368010		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000537746	ENST00000468311		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000537746	ENST00000368010		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000472573	ENST00000468311		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000472573	ENST00000368010		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160968617	-	PFDN2	chr1	161072165	-
Frame-shit	ENST00000368026	ENST00000368147		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
5CDS-intron	ENST00000368026	ENST00000485680		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
3UTR-3CDS	ENST00000289779	ENST00000368147		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
3UTR-intron	ENST00000289779	ENST00000485680		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
Frame-shit	ENST00000537746	ENST00000368147		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
5CDS-intron	ENST00000537746	ENST00000485680		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
intron-3CDS	ENST00000472573	ENST00000368147		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
intron-intron	ENST00000472573	ENST00000485680		TCGA	LD	LUSC	TCGA-L3-A524-01A	F11R	chr1	160990800	-	SPTA1	chr1	158631199	-
In-frame	ENST00000280653	ENST00000262189		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
In-frame	ENST00000280653	ENST00000355193		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000280653	ENST00000485655		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000280653	ENST00000485241		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
In-frame	ENST00000471841	ENST00000262189		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
In-frame	ENST00000471841	ENST00000355193		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000471841	ENST00000485655		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000471841	ENST00000485241		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
In-frame	ENST00000263969	ENST00000262189		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
In-frame	ENST00000263969	ENST00000355193		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000263969	ENST00000485655		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000263969	ENST00000485241		TCGA	LD	LUSC	TCGA-L3-A524-01A	MFN1	chr3	179069823	+	KMT2C	chr7	151921264	-
5CDS-intron	ENST00000554546	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554546	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554546	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554546	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554546	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554546	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554546	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000356296	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000557597	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555238	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000355058	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000359560	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555394	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000454166	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000544991	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000560335	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000555738	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000559312	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000554521	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5CDS-intron	ENST00000535282	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
intron-intron	ENST00000556600	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000340979		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000368131		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000368132		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000295809		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000430894		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000359709		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000556772	ENST00000448393		TCGA	LD	LUSC	TCGA-L3-A524-01A	NUMB	chr14	73763919	-	IFI16	chr1	159015087	+
5UTR-intron	ENST00000263967	ENST00000238571		TCGA	LD	LUSC	TCGA-L3-A524-01A	PIK3CA	chr3	178866391	+	YLPM1	chr14	75301968	+
5UTR-intron	ENST00000263967	ENST00000325680		TCGA	LD	LUSC	TCGA-L3-A524-01A	PIK3CA	chr3	178866391	+	YLPM1	chr14	75301968	+
5UTR-intron	ENST00000263967	ENST00000552421		TCGA	LD	LUSC	TCGA-L3-A524-01A	PIK3CA	chr3	178866391	+	YLPM1	chr14	75301968	+
5UTR-intron	ENST00000263967	ENST00000546901		TCGA	LD	LUSC	TCGA-L3-A524-01A	PIK3CA	chr3	178866391	+	YLPM1	chr14	75301968	+
5CDS-5UTR	ENST00000335272	ENST00000401886		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000447208		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000398042		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000432883		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000327374		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000335272	ENST00000479679		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000401833		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000434570		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000335272	ENST00000420290		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000335272	ENST00000456048		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000401886		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000447208		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000398042		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000432883		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000327374		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000320996	ENST00000479679		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000401833		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000434570		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000320996	ENST00000420290		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000320996	ENST00000456048		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000401886		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000447208		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000398042		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000432883		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000327374		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000455418	ENST00000479679		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000401833		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000434570		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000455418	ENST00000420290		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000455418	ENST00000456048		TCGA	LD	LUSC	TCGA-L3-A524-01A	PITPNB	chr22	28254375	-	TANGO2	chr22	20024283	+
5UTR-3CDS	ENST00000442092	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
5UTR-3CDS	ENST00000266022	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
5UTR-3CDS	ENST00000443081	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
5UTR-3CDS	ENST00000539992	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
3UTR-3CDS	ENST00000441115	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
5UTR-3CDS	ENST00000422955	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
intron-3CDS	ENST00000421682	ENST00000333323		TCGA	LD	LUSC	TCGA-L3-A524-01A	RBM6	chr3	49977658	+	FAM212A	chr3	49841614	+
Frame-shit	ENST00000261427	ENST00000340169		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000261427	ENST00000261434		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000261427	ENST00000513731		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000261427	ENST00000381846		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
5CDS-intron	ENST00000261427	ENST00000515061		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000295963	ENST00000340169		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000295963	ENST00000261434		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000295963	ENST00000513731		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000295963	ENST00000381846		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
5CDS-intron	ENST00000295963	ENST00000515061		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
3UTR-3CDS	ENST00000438068	ENST00000340169		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
3UTR-3CDS	ENST00000438068	ENST00000261434		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
3UTR-3CDS	ENST00000438068	ENST00000513731		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
3UTR-3CDS	ENST00000438068	ENST00000381846		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
3UTR-intron	ENST00000438068	ENST00000515061		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
intron-3CDS	ENST00000503368	ENST00000340169		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
intron-3CDS	ENST00000503368	ENST00000261434		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
intron-3CDS	ENST00000503368	ENST00000513731		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
intron-3CDS	ENST00000503368	ENST00000381846		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
intron-intron	ENST00000503368	ENST00000515061		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000445950	ENST00000340169		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000445950	ENST00000261434		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000445950	ENST00000513731		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
Frame-shit	ENST00000445950	ENST00000381846		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
5CDS-intron	ENST00000445950	ENST00000515061		TCGA	LD	LUSC	TCGA-L3-A524-01A	UBE2K	chr4	39739131	+	LIAS	chr4	39471637	+
In-frame	ENST00000377047	ENST00000376180		TCGA	LD	LUSC	TCGA-LA-A446-01A	GPC6	chr13	94197674	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000377047	ENST00000545560		TCGA	LD	LUSC	TCGA-LA-A446-01A	GPC6	chr13	94197674	+	ITGBL1	chr13	102220050	+
5CDS-5UTR	ENST00000377047	ENST00000376162		TCGA	LD	LUSC	TCGA-LA-A446-01A	GPC6	chr13	94197674	+	ITGBL1	chr13	102220050	+
5CDS-intron	ENST00000377047	ENST00000415285		TCGA	LD	LUSC	TCGA-LA-A446-01A	GPC6	chr13	94197674	+	ITGBL1	chr13	102220050	+
3UTR-3CDS	ENST00000574727	ENST00000321535		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ALOX12P2	chr17	6803304	+	FBXO39	chr17	6690099	+
5UTR-intron	ENST00000278174	ENST00000282091		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
5UTR-5UTR	ENST00000278174	ENST00000529816		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
intron-intron	ENST00000530907	ENST00000282091		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
intron-5UTR	ENST00000530907	ENST00000529816		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
5UTR-intron	ENST00000528120	ENST00000282091		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
5UTR-5UTR	ENST00000528120	ENST00000529816		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
intron-intron	ENST00000532261	ENST00000282091		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
intron-5UTR	ENST00000532261	ENST00000529816		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	BTBD10	chr11	13484639	-	PTH	chr11	13517720	-
In-frame	ENST00000317551	ENST00000552491		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000547825		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000552823		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000394943		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000341247		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000552783		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000552909		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5CDS-intron	ENST00000317551	ENST00000552008		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552491		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000547825		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552823		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000394943		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000341247		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552783		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552909		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-intron	ENST00000422340	ENST00000552008		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552491		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000547825		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552823		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000394943		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000341247		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552783		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552909		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-intron	ENST00000547852	ENST00000552008		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5CDS-5UTR	ENST00000440884	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000440884	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000440884	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000440884	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000416682	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000416682	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000416682	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000416682	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000429436	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000429436	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000429436	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000429436	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000303622	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000303622	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000303622	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000303622	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000216288	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000216288	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000216288	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000216288	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000553942	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000553942	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000553942	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000553942	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000335102	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000335102	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-3UTR	ENST00000335102	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
5CDS-5UTR	ENST00000335102	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
intron-5UTR	ENST00000561071	ENST00000216554		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
intron-5UTR	ENST00000561071	ENST00000558506		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
intron-3UTR	ENST00000561071	ENST00000560200		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
intron-5UTR	ENST00000561071	ENST00000392715		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MARK3	chr14	103852417	+	EIF5	chr14	103801990	+
intron-3CDS	ENST00000555545	ENST00000261558		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
intron-3CDS	ENST00000555545	ENST00000431972		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
intron-intron	ENST00000555545	ENST00000556723		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
In-frame	ENST00000261245	ENST00000261558		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
In-frame	ENST00000261245	ENST00000431972		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
5CDS-intron	ENST00000261245	ENST00000556723		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
In-frame	ENST00000539616	ENST00000261558		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
In-frame	ENST00000539616	ENST00000431972		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
5CDS-intron	ENST00000539616	ENST00000556723		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	MNAT1	chr14	61346553	+	AP5M1	chr14	57740962	+
intron-3CDS	ENST00000393533	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000393533	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000393533	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000393533	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000393533	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000372814	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000372814	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372814	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372814	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372814	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000351030	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000351030	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000351030	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000351030	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000351030	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000604420	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000604420	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000604420	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000604420	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000604420	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-3CDS	ENST00000535026	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-3CDS	ENST00000535026	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-intron	ENST00000535026	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-intron	ENST00000535026	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-intron	ENST00000535026	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-3CDS	ENST00000448249	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-3CDS	ENST00000448249	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-intron	ENST00000448249	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-intron	ENST00000448249	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
5UTR-intron	ENST00000448249	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000393527	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000393527	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000393527	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000393527	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000393527	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000434106	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000434106	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000434106	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000434106	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000434106	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000546203	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000546203	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000546203	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000546203	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000546203	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000372791	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000372791	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372791	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372791	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372791	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000372807	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000372807	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372807	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372807	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000372807	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000444119	ENST00000372853		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000444119	ENST00000452446		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000444119	ENST00000372850		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000444119	ENST00000372847		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-intron	ENST00000444119	ENST00000483206		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ODF2	chr9	131222833	+	URM1	chr9	131133598	+
intron-3CDS	ENST00000496746	ENST00000310325		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
intron-intron	ENST00000496746	ENST00000533168		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
intron-3CDS	ENST00000526497	ENST00000310325		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
intron-intron	ENST00000526497	ENST00000533168		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
5UTR-3CDS	ENST00000471387	ENST00000310325		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
5UTR-intron	ENST00000471387	ENST00000533168		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
Frame-shit	ENST00000359461	ENST00000310325		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
5CDS-intron	ENST00000359461	ENST00000533168		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
Frame-shit	ENST00000376901	ENST00000310325		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
5CDS-intron	ENST00000376901	ENST00000533168		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	YIF1A	chr11	66055069	-	CTSF	chr11	66335553	-
intron-5UTR	ENST00000513488	ENST00000300408		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000513488	ENST00000511832		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
intron-intron	ENST00000513488	ENST00000508009		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
5UTR-5UTR	ENST00000362063	ENST00000300408		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
5UTR-5UTR	ENST00000362063	ENST00000511832		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
5UTR-intron	ENST00000362063	ENST00000508009		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000430262	ENST00000300408		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
intron-5UTR	ENST00000430262	ENST00000511832		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
intron-intron	ENST00000430262	ENST00000508009		TCGA	LD	LUSC	TCGA-LA-A7SW-01A	ZNF652	chr17	47439775	-	PHB	chr17	47490653	-
Frame-shit	ENST00000535334	ENST00000314622		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
5CDS-intron	ENST00000535334	ENST00000485793		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
intron-3CDS	ENST00000303097	ENST00000314622		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
intron-intron	ENST00000303097	ENST00000485793		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
Frame-shit	ENST00000394222	ENST00000314622		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
5CDS-intron	ENST00000394222	ENST00000485793		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
intron-3CDS	ENST00000539730	ENST00000314622		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
intron-intron	ENST00000539730	ENST00000485793		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
Frame-shit	ENST00000471138	ENST00000314622		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
5CDS-intron	ENST00000471138	ENST00000485793		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
intron-3CDS	ENST00000486562	ENST00000314622		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
intron-intron	ENST00000486562	ENST00000485793		TCGA	LD	LUSC	TCGA-NC-A5HD-01A	ARL13B	chr3	93722752	+	NSUN3	chr3	93845055	+
3UTR-3UTR	ENST00000569256	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000569256	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000569256	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000248098	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000248098	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000248098	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000562684	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000562684	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000562684	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000561516	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000561516	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000561516	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000382711	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000382711	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000382711	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000569765	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000569765	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000569765	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000382710	ENST00000591997		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000382710	ENST00000251289		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000382710	ENST00000587001		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	HN1L	chr16	1749048	+	WDR18	chr19	989762	+
3UTR-3UTR	ENST00000591997	ENST00000569256		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
3UTR-3UTR	ENST00000591997	ENST00000248098		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
3UTR-3UTR	ENST00000591997	ENST00000562684		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
3UTR-3UTR	ENST00000591997	ENST00000561516		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
3UTR-3UTR	ENST00000591997	ENST00000382711		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
3UTR-3UTR	ENST00000591997	ENST00000569765		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
3UTR-3UTR	ENST00000591997	ENST00000382710		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000569256		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000248098		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000562684		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000561516		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000382711		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000569765		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000251289	ENST00000382710		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000569256		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000248098		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000562684		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000561516		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000382711		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000569765		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000587001	ENST00000382710		TCGA	LD	LUSC	TCGA-NC-A5HE-01A	WDR18	chr19	985975	+	HN1L	chr16	1747835	+
5CDS-3UTR	ENST00000263734	ENST00000486447		TCGA	LD	LUSC	TCGA-NC-A5HG-01A	EPAS1	chr2	46525076	+	CRIPT	chr2	46845912	+
5CDS-3UTR	ENST00000263734	ENST00000238892		TCGA	LD	LUSC	TCGA-NC-A5HG-01A	EPAS1	chr2	46525076	+	CRIPT	chr2	46845912	+
3UTR-3UTR	ENST00000467888	ENST00000486447		TCGA	LD	LUSC	TCGA-NC-A5HG-01A	EPAS1	chr2	46525076	+	CRIPT	chr2	46845912	+
3UTR-3UTR	ENST00000467888	ENST00000238892		TCGA	LD	LUSC	TCGA-NC-A5HG-01A	EPAS1	chr2	46525076	+	CRIPT	chr2	46845912	+
intron-3UTR	ENST00000530124	ENST00000531709		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000530124	ENST00000294172		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000530124	ENST00000532297		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-5UTR	ENST00000530124	ENST00000533048		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000530124	ENST00000531131		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000530124	ENST00000439713		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000257247	ENST00000531709		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000257247	ENST00000294172		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000257247	ENST00000532297		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-5UTR	ENST00000257247	ENST00000533048		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000257247	ENST00000531131		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000257247	ENST00000439713		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000525875	ENST00000531709		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000525875	ENST00000294172		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000525875	ENST00000532297		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-5UTR	ENST00000525875	ENST00000533048		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000525875	ENST00000531131		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000525875	ENST00000439713		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000378024	ENST00000531709		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000378024	ENST00000294172		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-3UTR	ENST00000378024	ENST00000532297		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-5UTR	ENST00000378024	ENST00000533048		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000378024	ENST00000531131		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
intron-intron	ENST00000378024	ENST00000439713		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	AHNAK	chr11	62301133	-	NXF1	chr11	62560173	-
5CDS-5UTR	ENST00000360319	ENST00000369484		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000360319	ENST00000369479		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000422373	ENST00000369484		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000422373	ENST00000369479		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000369850	ENST00000369484		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000369850	ENST00000369479		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000369856	ENST00000369484		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000369856	ENST00000369479		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000344736	ENST00000369484		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000344736	ENST00000369479		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000498491	ENST00000369484		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000498491	ENST00000369479		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	CMC4	chrX	154292308	-
5CDS-intron	ENST00000360319	ENST00000369476		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000360319	ENST00000482244		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000360319	ENST00000362018		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000422373	ENST00000369476		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000422373	ENST00000482244		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000422373	ENST00000362018		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000369850	ENST00000369476		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000369850	ENST00000482244		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000369850	ENST00000362018		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000369856	ENST00000369476		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000369856	ENST00000482244		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000369856	ENST00000362018		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000344736	ENST00000369476		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000344736	ENST00000482244		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000344736	ENST00000362018		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000498491	ENST00000369476		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000498491	ENST00000482244		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000498491	ENST00000362018		TCGA	LD	LUSC	TCGA-NC-A5HH-01A	FLNA	chrX	153595765	-	MTCP1	chrX	154292308	-
Frame-shit	ENST00000341162	ENST00000345097		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000341162	ENST00000261302		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000341162	ENST00000557258		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000341162	ENST00000555353		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
5CDS-intron	ENST00000341162	ENST00000555658		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000534938	ENST00000345097		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000534938	ENST00000261302		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000534938	ENST00000557258		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000534938	ENST00000555353		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
5CDS-intron	ENST00000534938	ENST00000555658		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
intron-3CDS	ENST00000553615	ENST00000345097		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
intron-3CDS	ENST00000553615	ENST00000261302		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
intron-3CDS	ENST00000553615	ENST00000557258		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
intron-3CDS	ENST00000553615	ENST00000555353		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
intron-intron	ENST00000553615	ENST00000555658		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	FCF1	chr14	75180255	+	FOXN3	chr14	89817152	-
Frame-shit	ENST00000264741	ENST00000443503		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	ITGA9	chr3	37670827	+	CTDSPL	chr3	37988548	+
Frame-shit	ENST00000264741	ENST00000273179		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	ITGA9	chr3	37670827	+	CTDSPL	chr3	37988548	+
5CDS-intron	ENST00000264741	ENST00000310189		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	ITGA9	chr3	37670827	+	CTDSPL	chr3	37988548	+
Frame-shit	ENST00000422441	ENST00000443503		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	ITGA9	chr3	37670827	+	CTDSPL	chr3	37988548	+
Frame-shit	ENST00000422441	ENST00000273179		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	ITGA9	chr3	37670827	+	CTDSPL	chr3	37988548	+
5CDS-intron	ENST00000422441	ENST00000310189		TCGA	LD	LUSC	TCGA-NC-A5HI-01A	ITGA9	chr3	37670827	+	CTDSPL	chr3	37988548	+
intron-3CDS	ENST00000341865	ENST00000541110		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000341865	ENST00000372917		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000341865	ENST00000372922		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000341865	ENST00000340840		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000341865	ENST00000354325		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000356542	ENST00000541110		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000356542	ENST00000372917		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000356542	ENST00000372922		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000356542	ENST00000340840		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
intron-3CDS	ENST00000356542	ENST00000354325		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	C6orf132	chr6	42069590	-	TRERF1	chr6	42200630	-
In-frame	ENST00000350997	ENST00000278826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-3UTR	ENST00000350997	ENST00000542946		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-intron	ENST00000350997	ENST00000540194		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-intron	ENST00000350997	ENST00000381787		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-3CDS	ENST00000536991	ENST00000278826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-3UTR	ENST00000536991	ENST00000542946		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-intron	ENST00000536991	ENST00000540194		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-intron	ENST00000536991	ENST00000381787		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
In-frame	ENST00000433932	ENST00000278826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-3UTR	ENST00000433932	ENST00000542946		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-intron	ENST00000433932	ENST00000540194		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-intron	ENST00000433932	ENST00000381787		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-3CDS	ENST00000460649	ENST00000278826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-3UTR	ENST00000460649	ENST00000542946		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-intron	ENST00000460649	ENST00000540194		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-intron	ENST00000460649	ENST00000381787		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
Frame-shit	ENST00000542506	ENST00000278826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-3UTR	ENST00000542506	ENST00000542946		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-intron	ENST00000542506	ENST00000540194		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5CDS-intron	ENST00000542506	ENST00000381787		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-3CDS	ENST00000541683	ENST00000278826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-3UTR	ENST00000541683	ENST00000542946		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-intron	ENST00000541683	ENST00000540194		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
intron-intron	ENST00000541683	ENST00000381787		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	FADS1	chr11	61580715	-	TMEM138	chr11	61135395	+
5UTR-3CDS	ENST00000393232	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000393232	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-intron	ENST00000393232	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000353868	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000353868	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-intron	ENST00000353868	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000539636	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000539636	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-intron	ENST00000539636	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000311967	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000311967	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-intron	ENST00000311967	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000223190	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-3CDS	ENST00000223190	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5UTR-intron	ENST00000223190	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
intron-3CDS	ENST00000393230	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
intron-3CDS	ENST00000393230	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
intron-intron	ENST00000393230	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
intron-3CDS	ENST00000393231	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
intron-3CDS	ENST00000393231	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
intron-intron	ENST00000393231	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
3UTR-3CDS	ENST00000477428	ENST00000268624		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
3UTR-3CDS	ENST00000477428	ENST00000315906		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
3UTR-intron	ENST00000477428	ENST00000567413		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	NRF1	chr7	129251665	+	ADAD2	chr16	84228048	+
5CDS-5UTR	ENST00000542507	ENST00000373826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
5CDS-3UTR	ENST00000542507	ENST00000465518		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
5CDS-5UTR	ENST00000373812	ENST00000373826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
5CDS-3UTR	ENST00000373812	ENST00000465518		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
5CDS-5UTR	ENST00000541996	ENST00000373826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
5CDS-3UTR	ENST00000541996	ENST00000465518		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
3UTR-5UTR	ENST00000478283	ENST00000373826		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
3UTR-3UTR	ENST00000478283	ENST00000465518		TCGA	LD	LUSC	TCGA-NC-A5HJ-01A	YTHDF2	chr1	29070498	+	RAB42	chr1	28920206	+
In-frame	ENST00000395952	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
In-frame	ENST00000395952	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000395952	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-3CDS	ENST00000375842	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-3CDS	ENST00000375842	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5UTR-intron	ENST00000375842	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
In-frame	ENST00000440843	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
In-frame	ENST00000440843	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000440843	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000471644	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000471644	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000471644	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
Frame-shit	ENST00000538874	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
Frame-shit	ENST00000538874	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
5CDS-intron	ENST00000538874	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000550556	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000550556	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550556	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000547161	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000547161	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547161	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000464268	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000464268	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000464268	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000444818	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000444818	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000444818	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000551038	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000551038	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000551038	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000549543	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000549543	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549543	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000494438	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000494438	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000494438	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000413853	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000413853	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000413853	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000549853	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000549853	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549853	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000547325	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000547325	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000547325	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000488103	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000488103	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000488103	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000457366	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000457366	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000457366	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000548592	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000548592	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000548592	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000482058	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000482058	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000482058	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000446529	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000446529	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000446529	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000552042	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000552042	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000552042	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000546528	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000546528	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000546528	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000475067	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000475067	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000475067	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000429735	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000429735	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000429735	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000549722	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000549722	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000549722	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000550719	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000550719	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000550719	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000495335	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000495335	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000495335	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000432617	ENST00000556581		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-3CDS	ENST00000432617	ENST00000375832		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000447811		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000554860		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000455632		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000453044		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000383420		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000557698		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000446062		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000556331		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
intron-intron	ENST00000432617	ENST00000442105		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	ABHD16A	chr6	31668719	-	LY6G6F	chr6	31675235	+
Frame-shit	ENST00000333957	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
Frame-shit	ENST00000446597	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
Frame-shit	ENST00000536386	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
Frame-shit	ENST00000396028	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
Frame-shit	ENST00000542676	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
5UTR-3CDS	ENST00000544930	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
Frame-shit	ENST00000545552	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
intron-3CDS	ENST00000540703	ENST00000229329		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	C2CD5	chr12	22696995	-	CMAS	chr12	22208083	+
intron-3UTR	ENST00000306247	ENST00000258173		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-3UTR	ENST00000306247	ENST00000568377		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-3UTR	ENST00000306247	ENST00000565067		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-intron	ENST00000306247	ENST00000569294		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-3UTR	ENST00000308807	ENST00000258173		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-3UTR	ENST00000308807	ENST00000568377		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-3UTR	ENST00000308807	ENST00000565067		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
intron-intron	ENST00000308807	ENST00000569294		TCGA	LD	LUSC	TCGA-NC-A5HK-01A	MLKL	chr16	74706166	-	TMEM231	chr16	75573782	-
5CDS-intron	ENST00000264093	ENST00000339566		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000264093	ENST00000409707		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000264093	ENST00000394073		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000264093	ENST00000394070		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000264093	ENST00000536064		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000264093	ENST00000486458		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000348222	ENST00000339566		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000348222	ENST00000409707		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000348222	ENST00000394073		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000348222	ENST00000394070		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000348222	ENST00000536064		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000348222	ENST00000486458		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
3UTR-intron	ENST00000462685	ENST00000339566		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
3UTR-intron	ENST00000462685	ENST00000409707		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
3UTR-intron	ENST00000462685	ENST00000394073		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
3UTR-intron	ENST00000462685	ENST00000394070		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
3UTR-intron	ENST00000462685	ENST00000536064		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
3UTR-intron	ENST00000462685	ENST00000486458		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000356837	ENST00000339566		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000356837	ENST00000409707		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000356837	ENST00000394073		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000356837	ENST00000394070		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000356837	ENST00000536064		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000356837	ENST00000486458		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DGUOK	chr2	74174033	+	STAMBP	chr2	74097270	+
5CDS-intron	ENST00000528416	ENST00000530157		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000525451		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000308162		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000527344		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000531407		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000524553		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000534769		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000528416	ENST00000531413		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000530157		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000525451		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000308162		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000527344		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000531407		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000524553		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000534769		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000415073	ENST00000531413		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000530157		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000525451		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000308162		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000527344		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000531407		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000524553		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000534769		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5CDS-intron	ENST00000252268	ENST00000531413		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000530157		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000525451		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000308162		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000527344		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000531407		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000524553		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000534769		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
3UTR-intron	ENST00000532264	ENST00000531413		TCGA	LD	LUSC	TCGA-NC-A5HL-01A	DPF2	chr11	65101389	+	CFL1	chr11	65594080	-
5UTR-3CDS	ENST00000292852	ENST00000252699		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
5UTR-3CDS	ENST00000292852	ENST00000424234		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
5UTR-intron	ENST00000292852	ENST00000390009		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
5UTR-intron	ENST00000292852	ENST00000497637		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000595329	ENST00000252699		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
intron-3CDS	ENST00000595329	ENST00000424234		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000595329	ENST00000390009		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
intron-intron	ENST00000595329	ENST00000497637		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	FBXO17	chr19	39466226	-	ACTN4	chr19	39191240	+
5UTR-5UTR	ENST00000378609	ENST00000341426		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000341991		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000378625		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000344463		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000492768		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000378609	ENST00000342348		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341426		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341991		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000378625		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000344463		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000492768		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000472614	ENST00000342348		TCGA	LD	LUSC	TCGA-NC-A5HN-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
3UTR-3CDS	ENST00000485843	ENST00000264231		TCGA	LD	LUSC	TCGA-NC-A5HP-01A	FAM86JP	chr3	125639748	+	POPDC2	chr3	119373460	-
3UTR-5UTR	ENST00000485843	ENST00000474523		TCGA	LD	LUSC	TCGA-NC-A5HP-01A	FAM86JP	chr3	125639748	+	POPDC2	chr3	119373460	-
3UTR-5UTR	ENST00000485843	ENST00000493094		TCGA	LD	LUSC	TCGA-NC-A5HP-01A	FAM86JP	chr3	125639748	+	POPDC2	chr3	119373460	-
3UTR-5UTR	ENST00000485843	ENST00000468801		TCGA	LD	LUSC	TCGA-NC-A5HP-01A	FAM86JP	chr3	125639748	+	POPDC2	chr3	119373460	-
3UTR-5UTR	ENST00000485843	ENST00000538678		TCGA	LD	LUSC	TCGA-NC-A5HP-01A	FAM86JP	chr3	125639748	+	POPDC2	chr3	119373460	-
5UTR-3CDS	ENST00000395555	ENST00000361658		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000395555	ENST00000395544		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-intron	ENST00000395555	ENST00000580130		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000494157	ENST00000361658		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000494157	ENST00000395544		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-intron	ENST00000494157	ENST00000580130		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000225740	ENST00000361658		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000225740	ENST00000395544		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-intron	ENST00000225740	ENST00000580130		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
intron-3CDS	ENST00000444455	ENST00000361658		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
intron-3CDS	ENST00000444455	ENST00000395544		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
intron-intron	ENST00000444455	ENST00000580130		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
intron-3CDS	ENST00000457500	ENST00000361658		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
intron-3CDS	ENST00000457500	ENST00000395544		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
intron-intron	ENST00000457500	ENST00000580130		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000485231	ENST00000361658		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-3CDS	ENST00000485231	ENST00000395544		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5UTR-intron	ENST00000485231	ENST00000580130		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	ALDH3A1	chr17	19651572	-	ULK2	chr17	19729499	-
5CDS-5UTR	ENST00000444631	ENST00000432071		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000444631	ENST00000263864		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000444631	ENST00000409760		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000336133	ENST00000432071		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000336133	ENST00000263864		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000336133	ENST00000409760		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000552080	ENST00000432071		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000552080	ENST00000263864		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5CDS-5UTR	ENST00000552080	ENST00000409760		TCGA	LD	LUSC	TCGA-NC-A5HQ-01A	SARNP	chr12	56182859	-	VAMP8	chr2	85806132	+
5UTR-3CDS	ENST00000370155	ENST00000369948		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000370155	ENST00000369949		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000370155	ENST00000369945		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000465289	ENST00000369948		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000465289	ENST00000369949		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000465289	ENST00000369945		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000427993	ENST00000369948		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000427993	ENST00000369949		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5UTR-3CDS	ENST00000427993	ENST00000369945		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370153	ENST00000369948		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370153	ENST00000369949		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370153	ENST00000369945		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370156	ENST00000369948		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370156	ENST00000369949		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
intron-3CDS	ENST00000370156	ENST00000369945		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	SLC35A3	chr1	100435718	+	C1orf194	chr1	109649281	-
5CDS-intron	ENST00000361524	ENST00000408388		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	ZNF521	chr18	22804309	-	PVT1	chr8	129108764	+
5CDS-intron	ENST00000584787	ENST00000408388		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	ZNF521	chr18	22804309	-	PVT1	chr8	129108764	+
5CDS-intron	ENST00000538137	ENST00000408388		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	ZNF521	chr18	22804309	-	PVT1	chr8	129108764	+
intron-intron	ENST00000579111	ENST00000408388		TCGA	LD	LUSC	TCGA-NC-A5HR-01A	ZNF521	chr18	22804309	-	PVT1	chr8	129108764	+
In-frame	ENST00000335016	ENST00000295887		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	BMP2K	chr4	79697875	+	CDS1	chr4	85552972	+
In-frame	ENST00000502871	ENST00000295887		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	BMP2K	chr4	79697875	+	CDS1	chr4	85552972	+
In-frame	ENST00000513000	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000513000	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000513000	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000513000	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000509777	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000509777	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000509777	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000509777	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
Frame-shit	ENST00000262992	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
Frame-shit	ENST00000262992	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000262992	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000262992	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000308502	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000308502	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000308502	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000308502	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
Frame-shit	ENST00000508116	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
Frame-shit	ENST00000508116	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000508116	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000508116	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-3CDS	ENST00000507861	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-3CDS	ENST00000507861	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-intron	ENST00000507861	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-intron	ENST00000507861	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000506217	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000506217	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000506217	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
5CDS-intron	ENST00000506217	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-3CDS	ENST00000508084	ENST00000296543		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-3CDS	ENST00000508084	ENST00000398947		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-intron	ENST00000508084	ENST00000480277		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
intron-intron	ENST00000508084	ENST00000515576		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	INPP4B	chr4	143324091	-	NAA15	chr4	140255328	+
In-frame	ENST00000360586	ENST00000395514		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
In-frame	ENST00000360586	ENST00000543643		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
Frame-shit	ENST00000360586	ENST00000491895		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5CDS-5UTR	ENST00000360586	ENST00000254299		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5CDS-5UTR	ENST00000360586	ENST00000536224		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-3CDS	ENST00000420358	ENST00000395514		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-3CDS	ENST00000420358	ENST00000543643		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-3CDS	ENST00000420358	ENST00000491895		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-5UTR	ENST00000420358	ENST00000254299		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-5UTR	ENST00000420358	ENST00000536224		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-3CDS	ENST00000359167	ENST00000395514		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-3CDS	ENST00000359167	ENST00000543643		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-3CDS	ENST00000359167	ENST00000491895		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-5UTR	ENST00000359167	ENST00000254299		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
intron-5UTR	ENST00000359167	ENST00000536224		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5UTR-3CDS	ENST00000421192	ENST00000395514		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5UTR-3CDS	ENST00000421192	ENST00000543643		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5UTR-3CDS	ENST00000421192	ENST00000491895		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5UTR-5UTR	ENST00000421192	ENST00000254299		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5UTR-5UTR	ENST00000421192	ENST00000536224		TCGA	LD	LUSC	TCGA-NC-A5HT-01A	WDHD1	chr14	55493429	-	GCH1	chr14	55332154	-
5CDS-3UTR	ENST00000445105	ENST00000339368		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000445105	ENST00000509152		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000445105	ENST00000526473		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000264730	ENST00000339368		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000264730	ENST00000509152		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000264730	ENST00000526473		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000454309	ENST00000339368		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000454309	ENST00000509152		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000454309	ENST00000526473		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000450716	ENST00000339368		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000450716	ENST00000509152		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000450716	ENST00000526473		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000430714	ENST00000339368		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000430714	ENST00000509152		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000430714	ENST00000526473		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000466144	ENST00000339368		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000466144	ENST00000509152		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000466144	ENST00000526473		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	FGF12	chr3	192444970	-	ZNF595	chr4	59323	+
5UTR-3CDS	ENST00000519416	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000519416	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000519416	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000519416	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-3CDS	ENST00000520615	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000520615	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000520615	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000520615	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
Frame-shit	ENST00000443286	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000443286	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000443286	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000443286	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
Frame-shit	ENST00000520340	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000520340	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000520340	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000520340	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
Frame-shit	ENST00000518415	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000518415	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000518415	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000518415	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-3CDS	ENST00000522752	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000522752	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000522752	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000522752	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-3CDS	ENST00000348567	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000348567	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000348567	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000348567	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-3CDS	ENST00000330691	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000330691	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000330691	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000330691	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
Frame-shit	ENST00000317827	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000317827	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000317827	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000317827	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
Frame-shit	ENST00000379931	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000379931	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000379931	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000379931	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-3CDS	ENST00000276520	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000276520	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000276520	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000276520	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-3CDS	ENST00000520973	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000520973	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000520973	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-intron	ENST00000520973	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-3CDS	ENST00000520611	ENST00000487273		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000520611	ENST00000466936		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000520611	ENST00000481513		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000520611	ENST00000484143		TCGA	LD	LUSC	TCGA-NK-A5CR-01A	TACC1	chr8	38646337	+	ADAM9	chr8	38899465	+
5UTR-3CDS	ENST00000328879	ENST00000328194		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000328879	ENST00000530044		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000328879	ENST00000527700		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000328879	ENST00000526523		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000440659	ENST00000328194		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000440659	ENST00000530044		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000440659	ENST00000527700		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000440659	ENST00000526523		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000470335	ENST00000328194		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-3CDS	ENST00000470335	ENST00000530044		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000470335	ENST00000527700		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5UTR-intron	ENST00000470335	ENST00000526523		TCGA	LD	LUSC	TCGA-NK-A5CX-01A	KLHL22	chr22	20850047	-	DENND5A	chr11	9229179	-
5CDS-intron	ENST00000379565	ENST00000452154		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
5CDS-3UTR	ENST00000379565	ENST00000414788		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
5CDS-5UTR	ENST00000379565	ENST00000430150		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
5CDS-intron	ENST00000379565	ENST00000452021		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
5CDS-intron	ENST00000379565	ENST00000412319		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
5CDS-5UTR	ENST00000379565	ENST00000416841		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
5CDS-intron	ENST00000379565	ENST00000509613		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000544447	ENST00000452154		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-3UTR	ENST00000544447	ENST00000414788		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000544447	ENST00000430150		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000544447	ENST00000452021		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000544447	ENST00000412319		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000544447	ENST00000416841		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000544447	ENST00000509613		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000379548	ENST00000452154		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-3UTR	ENST00000379548	ENST00000414788		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000379548	ENST00000430150		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000379548	ENST00000452021		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000379548	ENST00000412319		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000379548	ENST00000416841		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000379548	ENST00000509613		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000540702	ENST00000452154		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-3UTR	ENST00000540702	ENST00000414788		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000540702	ENST00000430150		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000540702	ENST00000452021		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000540702	ENST00000412319		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000540702	ENST00000416841		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000540702	ENST00000509613		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000479809	ENST00000452154		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-3UTR	ENST00000479809	ENST00000414788		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000479809	ENST00000430150		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000479809	ENST00000452021		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000479809	ENST00000412319		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-5UTR	ENST00000479809	ENST00000416841		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
intron-intron	ENST00000479809	ENST00000509613		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	RPS6KA3	chrX	20284682	-	FAM156B	chrX	52928085	+
In-frame	ENST00000391956	ENST00000264335		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000391956	ENST00000571732		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000391956	ENST00000573026		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000391956	ENST00000575977		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
5CDS-intron	ENST00000391956	ENST00000498643		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
In-frame	ENST00000221327	ENST00000264335		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000221327	ENST00000571732		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000221327	ENST00000573026		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000221327	ENST00000575977		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
5CDS-intron	ENST00000221327	ENST00000498643		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000592529	ENST00000264335		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000592529	ENST00000571732		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000592529	ENST00000573026		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
In-frame	ENST00000592529	ENST00000575977		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
5CDS-intron	ENST00000592529	ENST00000498643		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000586637	ENST00000264335		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
In-frame	ENST00000586637	ENST00000571732		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
In-frame	ENST00000586637	ENST00000573026		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000586637	ENST00000575977		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
5CDS-intron	ENST00000586637	ENST00000498643		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000587047	ENST00000264335		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000587047	ENST00000571732		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000587047	ENST00000573026		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000587047	ENST00000575977		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000587047	ENST00000498643		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000585514	ENST00000264335		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000585514	ENST00000571732		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000585514	ENST00000573026		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-3CDS	ENST00000585514	ENST00000575977		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
intron-intron	ENST00000585514	ENST00000498643		TCGA	LD	LUSC	TCGA-NK-A5D1-01A	ZNF180	chr19	44983500	-	YWHAE	chr17	1248793	-
5CDS-5UTR	ENST00000455089	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000455089	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000455089	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000455089	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000455089	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000455089	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000455089	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000342916	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000344576	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000420316	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000275493	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000442591	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
3UTR-5UTR	ENST00000463948	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000400128		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000400131		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000400135		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000400127		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000338326		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000299295		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
intron-5UTR	ENST00000454757	ENST00000543733		TCGA	LD	LUSC	TCGA-O2-A52N-01A	EGFR	chr7	55087058	+	CHODL	chr21	19628826	+
5CDS-5UTR	ENST00000232219	ENST00000406164		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000232219	ENST00000406824		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000232219	ENST00000339837		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000232219	ENST00000413939		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000232219	ENST00000296202		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000232219	ENST00000511444		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000232219	ENST00000512391		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000232219	ENST00000514703		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000232219	ENST00000507242		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000483943	ENST00000406164		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000483943	ENST00000406824		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000483943	ENST00000339837		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-intron	ENST00000483943	ENST00000413939		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-intron	ENST00000483943	ENST00000296202		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000483943	ENST00000511444		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000483943	ENST00000512391		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-intron	ENST00000483943	ENST00000514703		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000483943	ENST00000507242		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492918	ENST00000406164		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492918	ENST00000406824		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492918	ENST00000339837		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-intron	ENST00000492918	ENST00000413939		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-intron	ENST00000492918	ENST00000296202		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492918	ENST00000511444		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492918	ENST00000512391		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-intron	ENST00000492918	ENST00000514703		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492918	ENST00000507242		TCGA	LD	LUSC	TCGA-O2-A52N-01A	RBP1	chr3	139237263	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000253108	ENST00000301480		TCGA	LD	LUSC	TCGA-O2-A52Q-01A	EIF3G	chr19	10227476	-	ZNF560	chr19	9586045	-
intron-5UTR	ENST00000587168	ENST00000301480		TCGA	LD	LUSC	TCGA-O2-A52Q-01A	EIF3G	chr19	10227476	-	ZNF560	chr19	9586045	-
5UTR-intron	ENST00000394389	ENST00000393829		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000546249		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000537728		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000264649		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000585525		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000343619		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000544137		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
5UTR-intron	ENST00000394389	ENST00000587797		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000393829		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000546249		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000537728		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000264649		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000585525		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000343619		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000544137		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000394386	ENST00000587797		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000393829		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000546249		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000537728		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000264649		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000585525		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000343619		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000544137		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
intron-intron	ENST00000487847	ENST00000587797		TCGA	LD	LUSC	TCGA-O2-A52S-01A	DUSP14	chr17	35850058	+	ATP6V0A1	chr17	40629656	+
Frame-shit	ENST00000393923	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393923	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393923	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393923	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393923	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000412622	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000412622	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000412622	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000412622	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000412622	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000431670	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000431670	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000431670	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000431670	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000431670	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393925	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393925	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393925	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393925	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000393925	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000481953	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000481953	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000481953	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000481953	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000481953	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000495180	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000495180	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000495180	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000495180	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
Frame-shit	ENST00000495180	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000478922	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000478922	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000478922	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000478922	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000478922	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000477695	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000477695	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000477695	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000477695	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000477695	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000470699	ENST00000478951		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000470699	ENST00000393917		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000470699	ENST00000273368		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000470699	ENST00000455401		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
intron-3CDS	ENST00000470699	ENST00000486460		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PHLDB2	chr3	111639266	+	TAGLN3	chr3	111730610	+
In-frame	ENST00000339364	ENST00000371142		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
5CDS-intron	ENST00000339364	ENST00000490192		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
intron-3CDS	ENST00000468783	ENST00000371142		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
intron-intron	ENST00000468783	ENST00000490192		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
intron-3CDS	ENST00000371110	ENST00000371142		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
intron-intron	ENST00000371110	ENST00000490192		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
intron-3CDS	ENST00000371109	ENST00000371142		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
intron-intron	ENST00000371109	ENST00000490192		TCGA	LD	LUSC	TCGA-O2-A52S-01A	PIK3AP1	chr10	98469324	-	TM9SF3	chr10	98325183	-
In-frame	ENST00000315183	ENST00000358154		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
Frame-shit	ENST00000315183	ENST00000396014		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
5CDS-intron	ENST00000315183	ENST00000563026		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
3UTR-3CDS	ENST00000562829	ENST00000358154		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
3UTR-3CDS	ENST00000562829	ENST00000396014		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
3UTR-intron	ENST00000562829	ENST00000563026		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
In-frame	ENST00000395799	ENST00000358154		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
Frame-shit	ENST00000395799	ENST00000396014		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
5CDS-intron	ENST00000395799	ENST00000563026		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
intron-3CDS	ENST00000432286	ENST00000358154		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
intron-3CDS	ENST00000432286	ENST00000396014		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
intron-intron	ENST00000432286	ENST00000563026		TCGA	LD	LUSC	TCGA-O2-A52S-01A	TNRC6A	chr16	24741167	+	METTL9	chr16	21666548	+
In-frame	ENST00000607273	ENST00000368416		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
In-frame	ENST00000607273	ENST00000368417		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
In-frame	ENST00000607273	ENST00000546092		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
In-frame	ENST00000607273	ENST00000545433		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
5CDS-3UTR	ENST00000607273	ENST00000476571		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
3UTR-3CDS	ENST00000389488	ENST00000368416		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
3UTR-3CDS	ENST00000389488	ENST00000368417		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
3UTR-3CDS	ENST00000389488	ENST00000546092		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
3UTR-3CDS	ENST00000389488	ENST00000545433		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
3UTR-3UTR	ENST00000389488	ENST00000476571		TCGA	LD	LUSC	TCGA-O2-A52V-01A	PRIM2	chr6	57190843	+	NKAIN2	chr6	124676413	+
Frame-shit	ENST00000287598	ENST00000325083		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000287598	ENST00000519253		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000287598	ENST00000524226		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000287598	ENST00000518537		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000287598	ENST00000518936		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000287598	ENST00000327578		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000412359	ENST00000325083		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000412359	ENST00000519253		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
Frame-shit	ENST00000412359	ENST00000524226		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000412359	ENST00000518537		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000412359	ENST00000518936		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5CDS-intron	ENST00000412359	ENST00000327578		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
intron-3CDS	ENST00000560120	ENST00000325083		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
intron-3CDS	ENST00000560120	ENST00000519253		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
intron-3CDS	ENST00000560120	ENST00000524226		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
intron-intron	ENST00000560120	ENST00000518537		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
intron-intron	ENST00000560120	ENST00000518936		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
intron-intron	ENST00000560120	ENST00000327578		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	BUB1B	chr15	40468874	+	PCM1	chr8	17842956	+
5UTR-intron	ENST00000393799	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000393799	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000393799	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
3UTR-intron	ENST00000530427	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
3UTR-5UTR	ENST00000530427	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
3UTR-5UTR	ENST00000530427	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000393800	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000393800	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000393800	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000534534	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000534534	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000534534	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000524845	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000524845	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000524845	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
intron-intron	ENST00000265637	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
intron-5UTR	ENST00000265637	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
intron-5UTR	ENST00000265637	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000524904	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000524904	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000524904	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000393801	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000393801	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000393801	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000265636	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000265636	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000265636	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000529710	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000529710	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000529710	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-intron	ENST00000527403	ENST00000497554		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000527403	ENST00000549489		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000527403	ENST00000475668		TCGA	LD	LUSC	TCGA-O2-A5IB-01A	PPP6R3	chr11	68287119	+	MGAM	chr7	141705329	+
Frame-shit	ENST00000589390	ENST00000590071		TCGA	LD	LUSC	TCGA-XC-AA0X-01A	ZNF850	chr19	37253207	-	WTIP	chr19	34981281	+
Frame-shit	ENST00000589390	ENST00000270288		TCGA	LD	LUSC	TCGA-XC-AA0X-01A	ZNF850	chr19	37253207	-	WTIP	chr19	34981281	+
Frame-shit	ENST00000591344	ENST00000590071		TCGA	LD	LUSC	TCGA-XC-AA0X-01A	ZNF850	chr19	37253207	-	WTIP	chr19	34981281	+
Frame-shit	ENST00000591344	ENST00000270288		TCGA	LD	LUSC	TCGA-XC-AA0X-01A	ZNF850	chr19	37253207	-	WTIP	chr19	34981281	+
intron-3CDS	ENST00000282272	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000282272	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000282272	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000282272	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000282272	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-intron	ENST00000282272	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000337207	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000337207	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000337207	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000337207	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000337207	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-intron	ENST00000337207	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000450567	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000450567	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000450567	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000450567	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000450567	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-intron	ENST00000450567	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000328737	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000328737	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000328737	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000328737	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000328737	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-intron	ENST00000328737	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409153	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409153	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409153	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409153	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409153	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5CDS-intron	ENST00000409153	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5UTR-3CDS	ENST00000539527	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5UTR-3CDS	ENST00000539527	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5UTR-3CDS	ENST00000539527	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5UTR-3CDS	ENST00000539527	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5UTR-3CDS	ENST00000539527	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5UTR-intron	ENST00000539527	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409919	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409919	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409919	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409919	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
Frame-shit	ENST00000409919	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
5CDS-intron	ENST00000409919	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000477852	ENST00000520309		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000477852	ENST00000313581		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000477852	ENST00000281412		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000477852	ENST00000438402		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-3CDS	ENST00000477852	ENST00000431575		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
intron-intron	ENST00000477852	ENST00000461516		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ANKRD44	chr2	198175302	-	ANKAR	chr2	190571664	+
In-frame	ENST00000380050	ENST00000324679		TCGA	RV	MESO	TCGA-TS-A8AF-01A	CDK14	chr7	90675275	+	SAV1	chr14	51111732	-
In-frame	ENST00000265741	ENST00000324679		TCGA	RV	MESO	TCGA-TS-A8AF-01A	CDK14	chr7	90675275	+	SAV1	chr14	51111732	-
In-frame	ENST00000406263	ENST00000324679		TCGA	RV	MESO	TCGA-TS-A8AF-01A	CDK14	chr7	90675275	+	SAV1	chr14	51111732	-
In-frame	ENST00000436577	ENST00000324679		TCGA	RV	MESO	TCGA-TS-A8AF-01A	CDK14	chr7	90675275	+	SAV1	chr14	51111732	-
intron-3CDS	ENST00000496279	ENST00000324679		TCGA	RV	MESO	TCGA-TS-A8AF-01A	CDK14	chr7	90675275	+	SAV1	chr14	51111732	-
Frame-shit	ENST00000331366	ENST00000261883		TCGA	RV	MESO	TCGA-3U-A98F-01A	CPNE8	chr12	39170040	-	CILP	chr15	65496920	-
intron-3CDS	ENST00000538596	ENST00000261883		TCGA	RV	MESO	TCGA-3U-A98F-01A	CPNE8	chr12	39170040	-	CILP	chr15	65496920	-
intron-3CDS	ENST00000546603	ENST00000261883		TCGA	RV	MESO	TCGA-3U-A98F-01A	CPNE8	chr12	39170040	-	CILP	chr15	65496920	-
Frame-shit	ENST00000360449	ENST00000261883		TCGA	RV	MESO	TCGA-3U-A98F-01A	CPNE8	chr12	39170040	-	CILP	chr15	65496920	-
5UTR-3CDS	ENST00000535924	ENST00000370596		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
5UTR-3CDS	ENST00000535924	ENST00000326813		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
5UTR-3CDS	ENST00000535924	ENST00000294664		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
5UTR-3CDS	ENST00000483110	ENST00000370596		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
5UTR-3CDS	ENST00000483110	ENST00000326813		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
5UTR-3CDS	ENST00000483110	ENST00000294664		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000284031	ENST00000370596		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000284031	ENST00000326813		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000284031	ENST00000294664		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000539042	ENST00000370596		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000539042	ENST00000326813		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000539042	ENST00000294664		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000426972	ENST00000370596		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000426972	ENST00000326813		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000426972	ENST00000294664		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000542148	ENST00000370596		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000542148	ENST00000326813		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
intron-3CDS	ENST00000542148	ENST00000294664		TCGA	RV	MESO	TCGA-TS-A8AF-01A	DDAH1	chr1	86043667	-	WDR63	chr1	85587434	+
Frame-shit	ENST00000296591	ENST00000374332		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
Frame-shit	ENST00000296591	ENST00000263979		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000296591	ENST00000473891		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000296591	ENST00000374329		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
Frame-shit	ENST00000380138	ENST00000374332		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
Frame-shit	ENST00000380138	ENST00000263979		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000380138	ENST00000473891		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000380138	ENST00000374329		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
intron-3CDS	ENST00000510271	ENST00000374332		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
intron-3CDS	ENST00000510271	ENST00000263979		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
intron-intron	ENST00000510271	ENST00000473891		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
intron-intron	ENST00000510271	ENST00000374329		TCGA	RV	MESO	TCGA-TS-A8AF-01A	EDIL3	chr5	83680126	-	MAN1C1	chr1	26098148	+
5CDS-intron	ENST00000290246	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000290246	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5UTR-intron	ENST00000372176	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5UTR-intron	ENST00000372176	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000396391	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000396391	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000439931	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000439931	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5UTR-intron	ENST00000445496	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5UTR-intron	ENST00000445496	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
intron-intron	ENST00000454865	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
intron-intron	ENST00000454865	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000352077	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000352077	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5UTR-intron	ENST00000488853	ENST00000396863		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5UTR-intron	ENST00000488853	ENST00000217026		TCGA	RV	MESO	TCGA-TS-A7P7-01A	ELMO2	chr20	45023044	-	MYBL2	chr20	42310424	+
5CDS-intron	ENST00000412585	ENST00000556679		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000456570		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000477310		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000425368		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000497841		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000417261		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000427888		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000459734		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000455591		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000433503		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000474621		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000424727		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000436692		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000473139		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000399981		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000419920		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000465211		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000375455		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000489605		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000426239		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000419411		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000412585	ENST00000460958		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000556679		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000456570		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000477310		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000425368		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000497841		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000417261		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000427888		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000459734		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000455591		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000433503		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000474621		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000424727		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000436692		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000473139		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000399981		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000419920		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000465211		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000375455		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000489605		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000426239		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000419411		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000425848	ENST00000460958		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000556679		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000456570		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000477310		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000425368		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000497841		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000417261		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000427888		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000459734		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000455591		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000433503		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000474621		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000424727		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000436692		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000473139		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000399981		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000419920		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000465211		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000375455		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000489605		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000426239		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000419411		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000450871	ENST00000460958		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000556679		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000456570		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000477310		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000425368		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000497841		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000417261		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000427888		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000459734		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000455591		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000433503		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000474621		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000424727		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000436692		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000473139		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000399981		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000419920		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000465211		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000375455		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000489605		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000426239		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000419411		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000359635	ENST00000460958		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000556679		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000456570		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000477310		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000425368		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000497841		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000417261		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000427888		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000459734		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000455591		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000433503		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000474621		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000424727		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000436692		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000473139		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000399981		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000419920		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000465211		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000375455		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000489605		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000426239		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000419411		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000435618	ENST00000460958		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000556679		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000456570		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000477310		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000425368		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000497841		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000417261		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000427888		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000459734		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000455591		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000433503		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000474621		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000424727		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000436692		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000473139		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000399981		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000419920		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000465211		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000375455		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000489605		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000426239		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000419411		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
intron-intron	ENST00000421349	ENST00000460958		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	HLA-B	chr6	31321649	-	CFB	chr6	31913427	+
Frame-shit	ENST00000232766	ENST00000254508		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	KLHL18	chr3	47324584	+	NUP210	chr3	13441361	-
5CDS-intron	ENST00000232766	ENST00000485755		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	KLHL18	chr3	47324584	+	NUP210	chr3	13441361	-
5UTR-3CDS	ENST00000455924	ENST00000254508		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	KLHL18	chr3	47324584	+	NUP210	chr3	13441361	-
5UTR-intron	ENST00000455924	ENST00000485755		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	KLHL18	chr3	47324584	+	NUP210	chr3	13441361	-
3UTR-3CDS	ENST00000483201	ENST00000254508		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	KLHL18	chr3	47324584	+	NUP210	chr3	13441361	-
3UTR-intron	ENST00000483201	ENST00000485755		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	KLHL18	chr3	47324584	+	NUP210	chr3	13441361	-
Frame-shit	ENST00000380338	ENST00000228567		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5CDS-5UTR	ENST00000380338	ENST00000535526		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5CDS-intron	ENST00000380338	ENST00000567656		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5UTR-3CDS	ENST00000355930	ENST00000228567		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5UTR-5UTR	ENST00000355930	ENST00000535526		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5UTR-intron	ENST00000355930	ENST00000567656		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
Frame-shit	ENST00000429426	ENST00000228567		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5CDS-5UTR	ENST00000429426	ENST00000535526		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5CDS-intron	ENST00000429426	ENST00000567656		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5UTR-3CDS	ENST00000475957	ENST00000228567		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5UTR-5UTR	ENST00000475957	ENST00000535526		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
5UTR-intron	ENST00000475957	ENST00000567656		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
intron-3CDS	ENST00000380321	ENST00000228567		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
intron-5UTR	ENST00000380321	ENST00000535526		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
intron-intron	ENST00000380321	ENST00000567656		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MLLT3	chr9	20620653	-	SYT10	chr12	33560291	-
intron-3CDS	ENST00000421967	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000421967	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000421967	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000421967	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000421967	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426689	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426689	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426689	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426689	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000426689	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
5UTR-3CDS	ENST00000452211	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
5UTR-3CDS	ENST00000452211	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
5UTR-3CDS	ENST00000452211	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
5UTR-3CDS	ENST00000452211	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
5UTR-5UTR	ENST00000452211	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000450160	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000450160	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000450160	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000450160	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000450160	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426723	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426723	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426723	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000426723	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000426723	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000444069	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000444069	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000444069	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000444069	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000444069	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415644	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415644	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415644	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415644	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000415644	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415053	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415053	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415053	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000415053	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000415053	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000442597	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000442597	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000442597	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000442597	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000442597	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000447314	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000447314	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000447314	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000447314	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000447314	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000451657	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000451657	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000451657	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000451657	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000451657	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000435684	ENST00000307092		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000435684	ENST00000307076		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000435684	ENST00000422318		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000435684	ENST00000459839		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-5UTR	ENST00000435684	ENST00000490681		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	NME6	chr3	48341921	-	NT5DC2	chr3	52563350	-
intron-3CDS	ENST00000519301	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
intron-3CDS	ENST00000520407	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000523079	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000338921	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000356819	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000287845	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000341377	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000287842	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000521670	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
In-frame	ENST00000405005	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
intron-3CDS	ENST00000520502	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
intron-3CDS	ENST00000539990	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
intron-3CDS	ENST00000523681	ENST00000328195		TCGA	RV	MESO	TCGA-TS-A7P1-01A	NRG1	chr8	32406344	+	PROSC	chr8	37630273	+
5CDS-5UTR	ENST00000393357	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393357	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393357	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000393357	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393357	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393357	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393357	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000393357	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369596	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369596	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369596	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369596	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369596	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369596	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369596	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369598	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369598	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369598	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369598	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369598	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369598	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369598	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369600	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369600	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369600	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369600	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369600	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369600	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369600	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369604	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369604	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000369604	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369604	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369604	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369604	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000369604	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000357783	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000357783	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000357783	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000357783	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000357783	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000357783	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000357783	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000447664	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000447664	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000447664	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000447664	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000447664	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000447664	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-intron	ENST00000447664	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000361525		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000366940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000361395		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000366938		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000359162		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000493603		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-intron	ENST00000474926	ENST00000463665		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-intron	ENST00000474926	ENST00000487276		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000493748		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-5UTR	ENST00000474926	ENST00000471371		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-intron	ENST00000474926	ENST00000391890		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-intron	ENST00000474926	ENST00000366937		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-intron	ENST00000474926	ENST00000408911		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
intron-intron	ENST00000474926	ENST00000360012		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PHTF1	chr1	114300321	-	ESRRG	chr1	217113015	-
5CDS-5UTR	ENST00000265849	ENST00000306177		TCGA	RV	MESO	TCGA-LK-A4O2-01A	PMS2	chr7	6048628	-	USP42	chr7	6150756	+
intron-5UTR	ENST00000441476	ENST00000306177		TCGA	RV	MESO	TCGA-LK-A4O2-01A	PMS2	chr7	6048628	-	USP42	chr7	6150756	+
5CDS-5UTR	ENST00000382321	ENST00000306177		TCGA	RV	MESO	TCGA-LK-A4O2-01A	PMS2	chr7	6048628	-	USP42	chr7	6150756	+
5CDS-5UTR	ENST00000406569	ENST00000306177		TCGA	RV	MESO	TCGA-LK-A4O2-01A	PMS2	chr7	6048628	-	USP42	chr7	6150756	+
5UTR-5UTR	ENST00000469652	ENST00000306177		TCGA	RV	MESO	TCGA-LK-A4O2-01A	PMS2	chr7	6048628	-	USP42	chr7	6150756	+
Frame-shit	ENST00000339208	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000339208	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
Frame-shit	ENST00000346661	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000346661	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
Frame-shit	ENST00000345615	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000345615	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
Frame-shit	ENST00000502449	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000502449	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
Frame-shit	ENST00000591288	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000591288	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
Frame-shit	ENST00000394378	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000394378	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
Frame-shit	ENST00000585472	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
5CDS-intron	ENST00000585472	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
intron-3CDS	ENST00000588194	ENST00000225402		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
intron-intron	ENST00000588194	ENST00000590321		TCGA	RV	MESO	TCGA-3U-A98I-01A	SYNRG	chr17	35969327	-	AATF	chr17	35378233	+
In-frame	ENST00000460680	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000460680	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000460680	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000460680	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000460680	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
5CDS-5UTR	ENST00000460680	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000296288	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000296288	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000296288	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000296288	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
In-frame	ENST00000296288	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
5CDS-5UTR	ENST00000296288	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	BAP1	chr3	52437154	-	PLXNB1	chr3	48455480	-
Frame-shit	ENST00000335221	ENST00000580974		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000335221	ENST00000299954		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000335221	ENST00000335257		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000335221	ENST00000581322		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000321892	ENST00000580974		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000321892	ENST00000299954		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000321892	ENST00000335257		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000321892	ENST00000581322		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000306378	ENST00000580974		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000306378	ENST00000299954		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000306378	ENST00000335257		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000306378	ENST00000581322		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000424123	ENST00000580974		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000424123	ENST00000299954		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000424123	ENST00000335257		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000424123	ENST00000581322		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
intron-3CDS	ENST00000577770	ENST00000580974		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
intron-3CDS	ENST00000577770	ENST00000299954		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
intron-3CDS	ENST00000577770	ENST00000335257		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
intron-3CDS	ENST00000577770	ENST00000581322		TCGA	RV	MESO	TCGA-NQ-A57I-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65671595	+
Frame-shit	ENST00000418458	ENST00000460680		TCGA	RV	MESO	TCGA-UD-AABY-01A	GNL3	chr3	52725645	+	BAP1	chr3	52442093	-
Frame-shit	ENST00000418458	ENST00000296288		TCGA	RV	MESO	TCGA-UD-AABY-01A	GNL3	chr3	52725645	+	BAP1	chr3	52442093	-
Frame-shit	ENST00000394799	ENST00000460680		TCGA	RV	MESO	TCGA-UD-AABY-01A	GNL3	chr3	52725645	+	BAP1	chr3	52442093	-
Frame-shit	ENST00000394799	ENST00000296288		TCGA	RV	MESO	TCGA-UD-AABY-01A	GNL3	chr3	52725645	+	BAP1	chr3	52442093	-
intron-3CDS	ENST00000460073	ENST00000460680		TCGA	RV	MESO	TCGA-UD-AABY-01A	GNL3	chr3	52725645	+	BAP1	chr3	52442093	-
intron-3CDS	ENST00000460073	ENST00000296288		TCGA	RV	MESO	TCGA-UD-AABY-01A	GNL3	chr3	52725645	+	BAP1	chr3	52442093	-
5CDS-5UTR	ENST00000309446	ENST00000295049		TCGA	RV	MESO	TCGA-UT-A88G-01B	KLF7	chr2	208030191	-	RFTN2	chr2	198540190	-
intron-5UTR	ENST00000421199	ENST00000295049		TCGA	RV	MESO	TCGA-UT-A88G-01B	KLF7	chr2	208030191	-	RFTN2	chr2	198540190	-
5CDS-5UTR	ENST00000423015	ENST00000295049		TCGA	RV	MESO	TCGA-UT-A88G-01B	KLF7	chr2	208030191	-	RFTN2	chr2	198540190	-
5CDS-5UTR	ENST00000458272	ENST00000295049		TCGA	RV	MESO	TCGA-UT-A88G-01B	KLF7	chr2	208030191	-	RFTN2	chr2	198540190	-
intron-5UTR	ENST00000412414	ENST00000295049		TCGA	RV	MESO	TCGA-UT-A88G-01B	KLF7	chr2	208030191	-	RFTN2	chr2	198540190	-
intron-5UTR	ENST00000467833	ENST00000295049		TCGA	RV	MESO	TCGA-UT-A88G-01B	KLF7	chr2	208030191	-	RFTN2	chr2	198540190	-
In-frame	ENST00000412145	ENST00000373996		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000412145	ENST00000313400		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000412145	ENST00000361209		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000412145	ENST00000361477		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000412145	ENST00000288520		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000412145	ENST00000341734		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000412145	ENST00000358637		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000446349	ENST00000373996		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000446349	ENST00000313400		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000446349	ENST00000361209		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000446349	ENST00000361477		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000446349	ENST00000288520		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000446349	ENST00000341734		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000446349	ENST00000358637		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000374541	ENST00000373996		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000374541	ENST00000313400		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000374541	ENST00000361209		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000374541	ENST00000361477		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000374541	ENST00000288520		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000374541	ENST00000341734		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000374541	ENST00000358637		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000262539	ENST00000373996		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
In-frame	ENST00000262539	ENST00000313400		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000262539	ENST00000361209		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000262539	ENST00000361477		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000262539	ENST00000288520		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000262539	ENST00000341734		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000262539	ENST00000358637		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-3CDS	ENST00000394827	ENST00000373996		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-3CDS	ENST00000394827	ENST00000313400		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000394827	ENST00000361209		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000394827	ENST00000361477		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000394827	ENST00000288520		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000394827	ENST00000341734		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000394827	ENST00000358637		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-3CDS	ENST00000497739	ENST00000373996		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-3CDS	ENST00000497739	ENST00000313400		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000497739	ENST00000361209		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000497739	ENST00000361477		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000497739	ENST00000288520		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000497739	ENST00000341734		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
intron-intron	ENST00000497739	ENST00000358637		TCGA	RV	MESO	TCGA-TS-A7OU-01B	PTPN3	chr9	112207520	-	ASTN2	chr9	119903757	-
5CDS-intron	ENST00000493615	ENST00000486944		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
5CDS-intron	ENST00000493615	ENST00000497599		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
5CDS-intron	ENST00000493615	ENST00000392685		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
5CDS-intron	ENST00000493615	ENST00000314235		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
5CDS-intron	ENST00000493615	ENST00000349697		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
5CDS-intron	ENST00000493615	ENST00000485523		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000485303	ENST00000486944		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000485303	ENST00000497599		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000485303	ENST00000392685		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000485303	ENST00000314235		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000485303	ENST00000349697		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000485303	ENST00000485523		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000319792	ENST00000486944		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000319792	ENST00000497599		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000319792	ENST00000392685		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000319792	ENST00000314235		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000319792	ENST00000349697		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000319792	ENST00000485523		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000488016	ENST00000486944		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000488016	ENST00000497599		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000488016	ENST00000392685		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000488016	ENST00000314235		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000488016	ENST00000349697		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
intron-intron	ENST00000488016	ENST00000485523		TCGA	RV	MESO	TCGA-XT-AASU-01A	PVRL3	chr3	110866331	+	KCNMB3	chr3	178968722	-
Frame-shit	ENST00000336338	ENST00000300417		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
Frame-shit	ENST00000336338	ENST00000373324		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
Frame-shit	ENST00000336338	ENST00000323301		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
Frame-shit	ENST00000336338	ENST00000373322		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
5CDS-intron	ENST00000336338	ENST00000483302		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
intron-3CDS	ENST00000492438	ENST00000300417		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
intron-3CDS	ENST00000492438	ENST00000373324		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
intron-3CDS	ENST00000492438	ENST00000323301		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
intron-3CDS	ENST00000492438	ENST00000373322		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
intron-intron	ENST00000492438	ENST00000483302		TCGA	RV	MESO	TCGA-3H-AB3S-01A	SPAG17	chr1	118550667	-	LRSAM1	chr9	130221282	+
5CDS-intron	ENST00000360265	ENST00000361737		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000545242		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000546334		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000296372		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000318888		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000514025		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000447017		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000361581		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000341937		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000407564		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000505872		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000428004		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000360265	ENST00000515079		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000361737		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000545242		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000546334		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000296372		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000318888		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000514025		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000447017		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000361581		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000341937		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000407564		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000505872		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000428004		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000358461	ENST00000515079		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000361737		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000545242		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000546334		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000296372		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000318888		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000514025		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000447017		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000361581		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000341937		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000407564		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000505872		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000428004		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000420658	ENST00000515079		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000361737		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000545242		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000546334		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000296372		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000318888		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000514025		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000447017		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000361581		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000341937		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000407564		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000505872		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000428004		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
5CDS-intron	ENST00000382543	ENST00000515079		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000361737		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000545242		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000546334		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000296372		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000318888		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000514025		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000447017		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000361581		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000341937		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000407564		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000505872		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000428004		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
intron-intron	ENST00000513842	ENST00000515079		TCGA	RV	MESO	TCGA-UD-AAC7-01A	AFAP1	chr4	7840251	-	ABLIM2	chr4	7986620	-
Frame-shit	ENST00000547776	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000547776	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
Frame-shit	ENST00000329257	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000329257	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
5UTR-3CDS	ENST00000547010	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
5UTR-intron	ENST00000547010	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000341752	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000341752	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000549558	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000549558	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000550693	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000550693	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000549025	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000549025	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000549493	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000549493	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000547446	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000547446	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000333732	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000333732	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000546568	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000546568	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000332712	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000332712	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000546960	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000546960	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000550833	ENST00000266688		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000550833	ENST00000547485		TCGA	RV	MESO	TCGA-UD-AAC4-01A	ANKS1B	chr12	100377882	-	PTPRQ	chr12	80981908	+
Frame-shit	ENST00000290949	ENST00000283882		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000290949	ENST00000564286		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000540149	ENST00000283882		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000540149	ENST00000564286		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000602876	ENST00000283882		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000602876	ENST00000564286		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000567694	ENST00000283882		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000567694	ENST00000564286		TCGA	RV	MESO	TCGA-YS-AA4M-01A	ATP6V0D1	chr16	67514860	-	CFDP1	chr16	75339080	-
In-frame	ENST00000409235	ENST00000327761		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000409235	ENST00000395126		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000409235	ENST00000357043		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000409235	ENST00000359365		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-intron	ENST00000409235	ENST00000488024		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
In-frame	ENST00000410018	ENST00000327761		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000410018	ENST00000395126		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000410018	ENST00000357043		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000410018	ENST00000359365		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-intron	ENST00000410018	ENST00000488024		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
In-frame	ENST00000215069	ENST00000327761		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000215069	ENST00000395126		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000215069	ENST00000357043		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000215069	ENST00000359365		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
5CDS-intron	ENST00000215069	ENST00000488024		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
intron-3CDS	ENST00000467739	ENST00000327761		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
intron-5UTR	ENST00000467739	ENST00000395126		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
intron-5UTR	ENST00000467739	ENST00000357043		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
intron-5UTR	ENST00000467739	ENST00000359365		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
intron-intron	ENST00000467739	ENST00000488024		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CATSPERG	chr19	38828144	+	RASSF1	chr3	50369585	-
Frame-shit	ENST00000280527	ENST00000409236		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
Frame-shit	ENST00000280527	ENST00000356421		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
Frame-shit	ENST00000280527	ENST00000317233		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
Frame-shit	ENST00000280527	ENST00000409579		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
5CDS-intron	ENST00000280527	ENST00000483600		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
intron-3CDS	ENST00000473403	ENST00000409236		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
intron-3CDS	ENST00000473403	ENST00000356421		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
intron-3CDS	ENST00000473403	ENST00000317233		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
intron-3CDS	ENST00000473403	ENST00000409579		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
intron-intron	ENST00000473403	ENST00000483600		TCGA	RV	MESO	TCGA-LK-A4O0-01A	CRIM1	chr2	36669878	+	AFF3	chr2	100368763	-
intron-3CDS	ENST00000525975	ENST00000409993		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000525975	ENST00000354202		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000525975	ENST00000432443		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-intron	ENST00000525975	ENST00000445653		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-3CDS	ENST00000379016	ENST00000409993		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-3CDS	ENST00000379016	ENST00000354202		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-3CDS	ENST00000379016	ENST00000432443		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-intron	ENST00000379016	ENST00000445653		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-3CDS	ENST00000303296	ENST00000409993		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-3CDS	ENST00000303296	ENST00000354202		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-3CDS	ENST00000303296	ENST00000432443		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
5UTR-intron	ENST00000303296	ENST00000445653		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000456517	ENST00000409993		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000456517	ENST00000354202		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000456517	ENST00000432443		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-intron	ENST00000456517	ENST00000445653		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000534262	ENST00000409993		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000534262	ENST00000354202		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000534262	ENST00000432443		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-intron	ENST00000534262	ENST00000445653		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HIPK3	chr11	33279435	+	DPAGT1	chr11	118971118	-
intron-3CDS	ENST00000568630	ENST00000290472		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	MGA	chr15	42042813	+	PLA2G4D	chr15	42373331	-
In-frame	ENST00000545763	ENST00000290472		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	MGA	chr15	42042813	+	PLA2G4D	chr15	42373331	-
In-frame	ENST00000389936	ENST00000290472		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	MGA	chr15	42042813	+	PLA2G4D	chr15	42373331	-
In-frame	ENST00000219905	ENST00000290472		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	MGA	chr15	42042813	+	PLA2G4D	chr15	42373331	-
In-frame	ENST00000566586	ENST00000290472		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	MGA	chr15	42042813	+	PLA2G4D	chr15	42373331	-
In-frame	ENST00000570161	ENST00000290472		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	MGA	chr15	42042813	+	PLA2G4D	chr15	42373331	-
In-frame	ENST00000457714	ENST00000392455		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000457714	ENST00000392456		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000361589	ENST00000392455		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000361589	ENST00000392456		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000401917	ENST00000392455		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000401917	ENST00000392456		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000545397	ENST00000392455		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
In-frame	ENST00000545397	ENST00000392456		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000466350	ENST00000392455		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
intron-3CDS	ENST00000466350	ENST00000392456		TCGA	RV	MESO	TCGA-TS-A8AI-01A	NLGN1	chr3	173525622	+	CCDC50	chr3	191074877	+
5UTR-intron	ENST00000230859	ENST00000502509		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PAPD7	chr5	6714812	+	MTRR	chr5	7889208	+
5UTR-intron	ENST00000230859	ENST00000264668		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PAPD7	chr5	6714812	+	MTRR	chr5	7889208	+
5UTR-3UTR	ENST00000230859	ENST00000341013		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PAPD7	chr5	6714812	+	MTRR	chr5	7889208	+
5UTR-3UTR	ENST00000230859	ENST00000440940		TCGA	RV	MESO	TCGA-TS-A7P1-01A	PAPD7	chr5	6714812	+	MTRR	chr5	7889208	+
Frame-shit	ENST00000371084	ENST00000409900		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371084	ENST00000488080		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371084	ENST00000409156		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371084	ENST00000295497		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371084	ENST00000409597		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
Frame-shit	ENST00000540265	ENST00000409900		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000540265	ENST00000488080		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000540265	ENST00000409156		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000540265	ENST00000295497		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000540265	ENST00000409597		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
Frame-shit	ENST00000371083	ENST00000409900		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371083	ENST00000488080		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371083	ENST00000409156		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371083	ENST00000295497		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
5CDS-5UTR	ENST00000371083	ENST00000409597		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
3UTR-3CDS	ENST00000483707	ENST00000409900		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
3UTR-5UTR	ENST00000483707	ENST00000488080		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
3UTR-5UTR	ENST00000483707	ENST00000409156		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
3UTR-5UTR	ENST00000483707	ENST00000295497		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
3UTR-5UTR	ENST00000483707	ENST00000409597		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PGM1	chr1	64117523	+	CHN1	chr2	175676316	-
Frame-shit	ENST00000263857	ENST00000409792		TCGA	RV	MESO	TCGA-UT-A88E-01B	POLR1A	chr2	86292397	-	SETD2	chr3	47079267	-
5CDS-intron	ENST00000263857	ENST00000492397		TCGA	RV	MESO	TCGA-UT-A88E-01B	POLR1A	chr2	86292397	-	SETD2	chr3	47079267	-
Frame-shit	ENST00000409681	ENST00000409792		TCGA	RV	MESO	TCGA-UT-A88E-01B	POLR1A	chr2	86292397	-	SETD2	chr3	47079267	-
5CDS-intron	ENST00000409681	ENST00000492397		TCGA	RV	MESO	TCGA-UT-A88E-01B	POLR1A	chr2	86292397	-	SETD2	chr3	47079267	-
5UTR-3CDS	ENST00000483538	ENST00000409792		TCGA	RV	MESO	TCGA-UT-A88E-01B	POLR1A	chr2	86292397	-	SETD2	chr3	47079267	-
5UTR-intron	ENST00000483538	ENST00000492397		TCGA	RV	MESO	TCGA-UT-A88E-01B	POLR1A	chr2	86292397	-	SETD2	chr3	47079267	-
5UTR-5UTR	ENST00000487143	ENST00000409855		TCGA	RV	MESO	TCGA-UT-A88D-01B	STK39	chr2	168869144	-	SCN7A	chr2	167334220	-
5CDS-5UTR	ENST00000355999	ENST00000409855		TCGA	RV	MESO	TCGA-UT-A88D-01B	STK39	chr2	168869144	-	SCN7A	chr2	167334220	-
In-frame	ENST00000263663	ENST00000382080		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAF1B	chr2	9985447	+	SGCZ	chr8	14412435	-
In-frame	ENST00000263663	ENST00000421524		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAF1B	chr2	9985447	+	SGCZ	chr8	14412435	-
3UTR-3CDS	ENST00000402170	ENST00000382080		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAF1B	chr2	9985447	+	SGCZ	chr8	14412435	-
3UTR-3CDS	ENST00000402170	ENST00000421524		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAF1B	chr2	9985447	+	SGCZ	chr8	14412435	-
5UTR-3CDS	ENST00000396242	ENST00000382080		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAF1B	chr2	9985447	+	SGCZ	chr8	14412435	-
5UTR-3CDS	ENST00000396242	ENST00000421524		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAF1B	chr2	9985447	+	SGCZ	chr8	14412435	-
intron-5UTR	ENST00000556922	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-5UTR	ENST00000556922	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-intron	ENST00000556922	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-5UTR	ENST00000554444	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-5UTR	ENST00000554444	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-intron	ENST00000554444	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000315491	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000315491	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-intron	ENST00000315491	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
3UTR-5UTR	ENST00000554116	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
3UTR-5UTR	ENST00000554116	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
3UTR-intron	ENST00000554116	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000555576	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000555576	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-intron	ENST00000555576	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000554336	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000554336	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-intron	ENST00000554336	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000553967	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-5UTR	ENST00000553967	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-intron	ENST00000553967	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-5UTR	ENST00000304984	ENST00000394420		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-5UTR	ENST00000304984	ENST00000537866		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
intron-intron	ENST00000304984	ENST00000563073		TCGA	RV	MESO	TCGA-YS-AA4M-01A	TUBB3	chr16	89989866	+	RSPRY1	chr16	57238416	+
5CDS-intron	ENST00000335350	ENST00000583688		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	UNC5B	chr10	73047522	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000335350	ENST00000330889		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	UNC5B	chr10	73047522	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000335350	ENST00000580525		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	UNC5B	chr10	73047522	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000373192	ENST00000583688		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	UNC5B	chr10	73047522	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000373192	ENST00000330889		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	UNC5B	chr10	73047522	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000373192	ENST00000580525		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	UNC5B	chr10	73047522	+	ADAP2	chr17	29271925	+
5CDS-5UTR	ENST00000320985	ENST00000331737		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000361310		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000413025		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000436087		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000452305		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000442986		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000538351		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000320985	ENST00000375311		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-intron	ENST00000320985	ENST00000444692		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000331737		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000361310		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000413025		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000436087		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000452305		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000442986		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000538351		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000361642	ENST00000375311		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-intron	ENST00000361642	ENST00000444692		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000331737		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000361310		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000413025		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000436087		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000452305		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000442986		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000538351		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-5UTR	ENST00000559858	ENST00000375311		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
3UTR-intron	ENST00000559858	ENST00000444692		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000331737		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000361310		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000413025		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000436087		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000452305		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000442986		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000538351		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000560721	ENST00000375311		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-intron	ENST00000560721	ENST00000444692		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000331737		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000361310		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000413025		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000436087		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000452305		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000442986		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000538351		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-5UTR	ENST00000542815	ENST00000375311		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
5CDS-intron	ENST00000542815	ENST00000444692		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000331737		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000361310		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000413025		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000436087		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000452305		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000442986		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000538351		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-5UTR	ENST00000446923	ENST00000375311		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
intron-intron	ENST00000446923	ENST00000444692		TCGA	RV	MESO	TCGA-TS-A8AI-01A	ZEB1	chr10	31608221	+	ZNF438	chr10	31165994	-
Frame-shit	ENST00000450241	ENST00000598913		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000450241	ENST00000314471		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000450241	ENST00000594204		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000450241	ENST00000596368		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000414720	ENST00000598913		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000414720	ENST00000314471		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000414720	ENST00000594204		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000414720	ENST00000596368		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000455521	ENST00000598913		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000455521	ENST00000314471		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000455521	ENST00000594204		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000455521	ENST00000596368		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
In-frame	ENST00000595687	ENST00000598913		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
In-frame	ENST00000595687	ENST00000314471		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000595687	ENST00000594204		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000595687	ENST00000596368		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
In-frame	ENST00000594395	ENST00000598913		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
In-frame	ENST00000594395	ENST00000314471		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000594395	ENST00000594204		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000594395	ENST00000596368		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000340963	ENST00000598913		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000340963	ENST00000314471		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000340963	ENST00000594204		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
5CDS-intron	ENST00000340963	ENST00000596368		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ZNF780A	chr19	40587726	-	SAMD4B	chr19	39860295	+
Frame-shit	ENST00000361570	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000361570	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000304494	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000304494	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
Frame-shit	ENST00000579755	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000579755	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000579122	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000579122	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000578845	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000578845	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
Frame-shit	ENST00000530628	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000530628	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000498124	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000498124	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000498628	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000498628	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000494262	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000494262	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000446177	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000446177	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000479692	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000479692	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000497750	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000497750	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000470819	ENST00000264669		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000470819	ENST00000513658		TCGA	RV	MESO	TCGA-TS-A7P1-01A	CDKN2A	chr9	21994138	-	FASTKD3	chr5	7866096	-
In-frame	ENST00000316623	ENST00000352903		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
In-frame	ENST00000316623	ENST00000537232		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
In-frame	ENST00000316623	ENST00000561221		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
In-frame	ENST00000316623	ENST00000558083		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
5CDS-intron	ENST00000316623	ENST00000559142		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
5CDS-intron	ENST00000316623	ENST00000560582		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000561429	ENST00000352903		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000561429	ENST00000537232		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000561429	ENST00000561221		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000561429	ENST00000558083		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-intron	ENST00000561429	ENST00000559142		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-intron	ENST00000561429	ENST00000560582		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000560355	ENST00000352903		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000560355	ENST00000537232		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000560355	ENST00000561221		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-3CDS	ENST00000560355	ENST00000558083		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-intron	ENST00000560355	ENST00000559142		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
intron-intron	ENST00000560355	ENST00000560582		TCGA	RV	MESO	TCGA-TS-A8AF-01A	FBN1	chr15	48905207	-	TEX9	chr15	56686363	+
Frame-shit	ENST00000329474	ENST00000378454		TCGA	RV	MESO	TCGA-UD-AAC6-01A	LRRC16A	chr6	25540306	+	DCDC2	chr6	24353851	-
5CDS-intron	ENST00000329474	ENST00000378450		TCGA	RV	MESO	TCGA-UD-AAC6-01A	LRRC16A	chr6	25540306	+	DCDC2	chr6	24353851	-
intron-3CDS	ENST00000377969	ENST00000378454		TCGA	RV	MESO	TCGA-UD-AAC6-01A	LRRC16A	chr6	25540306	+	DCDC2	chr6	24353851	-
intron-intron	ENST00000377969	ENST00000378450		TCGA	RV	MESO	TCGA-UD-AAC6-01A	LRRC16A	chr6	25540306	+	DCDC2	chr6	24353851	-
intron-3CDS	ENST00000476458	ENST00000378454		TCGA	RV	MESO	TCGA-UD-AAC6-01A	LRRC16A	chr6	25540306	+	DCDC2	chr6	24353851	-
intron-intron	ENST00000476458	ENST00000378450		TCGA	RV	MESO	TCGA-UD-AAC6-01A	LRRC16A	chr6	25540306	+	DCDC2	chr6	24353851	-
intron-3CDS	ENST00000568630	ENST00000288912		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
intron-3CDS	ENST00000568630	ENST00000397454		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
intron-intron	ENST00000568630	ENST00000545752		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000545763	ENST00000288912		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000545763	ENST00000397454		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
5CDS-intron	ENST00000545763	ENST00000545752		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000389936	ENST00000288912		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000389936	ENST00000397454		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
5CDS-intron	ENST00000389936	ENST00000545752		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000219905	ENST00000288912		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000219905	ENST00000397454		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
5CDS-intron	ENST00000219905	ENST00000545752		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000566586	ENST00000288912		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000566586	ENST00000397454		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
5CDS-intron	ENST00000566586	ENST00000545752		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000570161	ENST00000288912		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
Frame-shit	ENST00000570161	ENST00000397454		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
5CDS-intron	ENST00000570161	ENST00000545752		TCGA	RV	MESO	TCGA-3H-AB3S-01A	MGA	chr15	42050037	+	WDR66	chr12	122380440	+
In-frame	ENST00000300131	ENST00000300134		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
In-frame	ENST00000300131	ENST00000538913		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
In-frame	ENST00000300131	ENST00000543873		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
In-frame	ENST00000300131	ENST00000556155		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
In-frame	ENST00000300131	ENST00000537215		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
In-frame	ENST00000300131	ENST00000454075		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000342556	ENST00000300134		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000342556	ENST00000538913		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000342556	ENST00000543873		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000342556	ENST00000556155		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000342556	ENST00000537215		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000342556	ENST00000454075		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000357680	ENST00000300134		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000357680	ENST00000538913		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000357680	ENST00000543873		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000357680	ENST00000556155		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000357680	ENST00000537215		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000357680	ENST00000454075		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000554718	ENST00000300134		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000554718	ENST00000538913		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000554718	ENST00000543873		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000554718	ENST00000556155		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000554718	ENST00000537215		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
intron-3CDS	ENST00000554718	ENST00000454075		TCGA	RV	MESO	TCGA-SH-A7BH-01A	NAB2	chr12	57487381	+	STAT6	chr12	57493223	-
5CDS-5UTR	ENST00000366898	ENST00000278795		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366898	ENST00000305958		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366898	ENST00000339123		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-3UTR	ENST00000366898	ENST00000484515		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366898	ENST00000346595		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366898	ENST00000379460		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366897	ENST00000278795		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366897	ENST00000305958		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366897	ENST00000339123		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-3UTR	ENST00000366897	ENST00000484515		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366897	ENST00000346595		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366897	ENST00000379460		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366896	ENST00000278795		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366896	ENST00000305958		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366896	ENST00000339123		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-3UTR	ENST00000366896	ENST00000484515		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366896	ENST00000346595		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366896	ENST00000379460		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366894	ENST00000278795		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366894	ENST00000305958		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366894	ENST00000339123		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-3UTR	ENST00000366894	ENST00000484515		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366894	ENST00000346595		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366894	ENST00000379460		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000338468	ENST00000278795		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000338468	ENST00000305958		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000338468	ENST00000339123		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-3UTR	ENST00000338468	ENST00000484515		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000338468	ENST00000346595		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000338468	ENST00000379460		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366892	ENST00000278795		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366892	ENST00000305958		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366892	ENST00000339123		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-3UTR	ENST00000366892	ENST00000484515		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366892	ENST00000346595		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
5CDS-5UTR	ENST00000366892	ENST00000379460		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PARK2	chr6	161969886	-	SMOX	chr20	4155677	+
In-frame	ENST00000356770	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000356770	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000356770	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000356770	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000356770	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
Frame-shit	ENST00000394830	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
Frame-shit	ENST00000394830	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
Frame-shit	ENST00000394830	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000394830	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000394830	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000296302	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000296302	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000296302	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000296302	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000296302	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000337303	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000337303	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000337303	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000337303	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000337303	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000410007	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000410007	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000410007	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000410007	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000410007	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409057	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409057	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409057	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000409057	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000409057	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409114	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409114	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409114	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000409114	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000409114	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409767	ENST00000296438		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409767	ENST00000415155		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409767	ENST00000445170		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000409767	ENST00000436231		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000409767	ENST00000468158		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52595783	-	FBXW12	chr3	48416844	+
In-frame	ENST00000361417	ENST00000252108		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
In-frame	ENST00000361417	ENST00000431736		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
5CDS-intron	ENST00000361417	ENST00000545354		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
In-frame	ENST00000356063	ENST00000252108		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
In-frame	ENST00000356063	ENST00000431736		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
5CDS-intron	ENST00000356063	ENST00000545354		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
3UTR-3CDS	ENST00000534672	ENST00000252108		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
3UTR-3CDS	ENST00000534672	ENST00000431736		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
3UTR-intron	ENST00000534672	ENST00000545354		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
intron-3CDS	ENST00000527898	ENST00000252108		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
intron-3CDS	ENST00000527898	ENST00000431736		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
intron-intron	ENST00000527898	ENST00000545354		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
intron-3CDS	ENST00000524713	ENST00000252108		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
intron-3CDS	ENST00000524713	ENST00000431736		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
intron-intron	ENST00000524713	ENST00000545354		TCGA	RV	MESO	TCGA-ZN-A9VS-01A	PHLDB1	chr11	118503013	+	UBE4A	chr11	118243222	+
In-frame	ENST00000356948	ENST00000342878		TCGA	RV	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	194418	+
In-frame	ENST00000350092	ENST00000342878		TCGA	RV	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	194418	+
In-frame	ENST00000349038	ENST00000342878		TCGA	RV	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	194418	+
In-frame	ENST00000394601	ENST00000342878		TCGA	RV	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	194418	+
5UTR-3CDS	ENST00000348370	ENST00000373511		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000348370	ENST00000373498		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000348370	ENST00000350766		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000348370	ENST00000373503		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000348370	ENST00000394063		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000348370	ENST00000265960		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000348370	ENST00000373497		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000348370	ENST00000394060		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-intron	ENST00000348370	ENST00000483937		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000434298	ENST00000373511		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000434298	ENST00000373498		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000434298	ENST00000350766		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000434298	ENST00000373503		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000434298	ENST00000394063		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000434298	ENST00000265960		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000434298	ENST00000373497		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000434298	ENST00000394060		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-intron	ENST00000434298	ENST00000483937		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000559209	ENST00000373511		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000559209	ENST00000373498		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-3CDS	ENST00000559209	ENST00000350766		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000559209	ENST00000373503		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000559209	ENST00000394063		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000559209	ENST00000265960		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000559209	ENST00000373497		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-5UTR	ENST00000559209	ENST00000394060		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
5UTR-intron	ENST00000559209	ENST00000483937		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000557998	ENST00000373511		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000557998	ENST00000373498		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000557998	ENST00000350766		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000557998	ENST00000373503		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000557998	ENST00000394063		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000557998	ENST00000265960		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000557998	ENST00000373497		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000557998	ENST00000394060		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-intron	ENST00000557998	ENST00000483937		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000561186	ENST00000373511		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000561186	ENST00000373498		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000561186	ENST00000350766		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000561186	ENST00000373503		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000561186	ENST00000394063		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000561186	ENST00000265960		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000561186	ENST00000373497		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000561186	ENST00000394060		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-intron	ENST00000561186	ENST00000483937		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000560080	ENST00000373511		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000560080	ENST00000373498		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-3CDS	ENST00000560080	ENST00000350766		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000560080	ENST00000373503		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000560080	ENST00000394063		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000560080	ENST00000265960		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000560080	ENST00000373497		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-5UTR	ENST00000560080	ENST00000394060		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
intron-intron	ENST00000560080	ENST00000483937		TCGA	RV	MESO	TCGA-SH-A9CU-01A	RNF111	chr15	59280267	+	MAPKAP1	chr9	128348006	-
Frame-shit	ENST00000406606	ENST00000303407		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000406606	ENST00000473349		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000406606	ENST00000371834		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000406606	ENST00000357885		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
Frame-shit	ENST00000371850	ENST00000303407		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000371850	ENST00000473349		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000371850	ENST00000371834		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000371850	ENST00000357885		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
Frame-shit	ENST00000371851	ENST00000303407		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000371851	ENST00000473349		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000371851	ENST00000371834		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-intron	ENST00000371851	ENST00000357885		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
intron-3CDS	ENST00000486113	ENST00000303407		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
intron-intron	ENST00000486113	ENST00000473349		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
intron-intron	ENST00000486113	ENST00000371834		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
intron-intron	ENST00000486113	ENST00000357885		TCGA	RV	MESO	TCGA-TS-A7OU-01B	VAV2	chr9	136726496	-	BRD3	chr9	136907073	-
5CDS-5UTR	ENST00000354698	ENST00000421307		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000354698	ENST00000354379		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000354698	ENST00000336686		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000354698	ENST00000421276		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000354698	ENST00000396428		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000354698	ENST00000440230		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-intron	ENST00000354698	ENST00000490597		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000427617	ENST00000421307		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000427617	ENST00000354379		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000427617	ENST00000336686		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000427617	ENST00000421276		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000427617	ENST00000396428		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000427617	ENST00000440230		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-intron	ENST00000427617	ENST00000490597		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000412564	ENST00000421307		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000412564	ENST00000354379		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000412564	ENST00000336686		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000412564	ENST00000421276		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000412564	ENST00000396428		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000412564	ENST00000440230		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-intron	ENST00000412564	ENST00000490597		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000440261	ENST00000421307		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000440261	ENST00000354379		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000440261	ENST00000336686		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000440261	ENST00000421276		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000440261	ENST00000396428		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-5UTR	ENST00000440261	ENST00000440230		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5CDS-intron	ENST00000440261	ENST00000490597		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-5UTR	ENST00000454212	ENST00000421307		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-5UTR	ENST00000454212	ENST00000354379		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-5UTR	ENST00000454212	ENST00000336686		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-5UTR	ENST00000454212	ENST00000421276		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-5UTR	ENST00000454212	ENST00000396428		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-5UTR	ENST00000454212	ENST00000440230		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
3UTR-intron	ENST00000454212	ENST00000490597		TCGA	RV	MESO	TCGA-MQ-A4LM-01A	ZNF589	chr3	48302429	+	LRRFIP2	chr3	37190529	-
5UTR-3CDS	ENST00000458497	ENST00000506823		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-3CDS	ENST00000458497	ENST00000508122		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-intron	ENST00000458497	ENST00000457021		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-intron	ENST00000458497	ENST00000511251		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-3CDS	ENST00000177648	ENST00000506823		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-3CDS	ENST00000177648	ENST00000508122		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-intron	ENST00000177648	ENST00000457021		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-intron	ENST00000177648	ENST00000511251		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-3CDS	ENST00000504176	ENST00000506823		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-3CDS	ENST00000504176	ENST00000508122		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-intron	ENST00000504176	ENST00000457021		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
5UTR-intron	ENST00000504176	ENST00000511251		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
intron-3CDS	ENST00000505912	ENST00000506823		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
intron-3CDS	ENST00000505912	ENST00000508122		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
intron-intron	ENST00000505912	ENST00000457021		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
intron-intron	ENST00000505912	ENST00000511251		TCGA	RV	MESO	TCGA-LK-A4NY-01A	ALPK1	chr4	113218625	+	GALNTL6	chr4	173803941	+
intron-3CDS	ENST00000561069	ENST00000353809		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
intron-3CDS	ENST00000561069	ENST00000354638		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
intron-intron	ENST00000561069	ENST00000382996		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000558402	ENST00000353809		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000558402	ENST00000354638		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-intron	ENST00000558402	ENST00000382996		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000558330	ENST00000353809		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000558330	ENST00000354638		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-intron	ENST00000558330	ENST00000382996		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000411764	ENST00000353809		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000411764	ENST00000354638		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-intron	ENST00000411764	ENST00000382996		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000558259	ENST00000353809		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-3CDS	ENST00000558259	ENST00000354638		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5UTR-intron	ENST00000558259	ENST00000382996		TCGA	RV	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28117068	-
5CDS-5UTR	ENST00000580900	ENST00000379992		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000580900	ENST00000493941		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000580900	ENST00000308675		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000380172	ENST00000379992		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000380172	ENST00000493941		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000380172	ENST00000308675		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000460874	ENST00000379992		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000460874	ENST00000493941		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000460874	ENST00000308675		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
intron-5UTR	ENST00000427788	ENST00000379992		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
intron-intron	ENST00000427788	ENST00000493941		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
intron-intron	ENST00000427788	ENST00000308675		TCGA	RV	MESO	TCGA-LK-A4O5-01A	MTAP	chr9	21854869	+	LINGO2	chr9	28476023	-
In-frame	ENST00000347330	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000347330	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000347330	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000413209	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000413209	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000413209	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000338641	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000338641	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000338641	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000403435	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000403435	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000403435	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000361452	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000361452	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000361452	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000403999	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000403999	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000403999	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000334961	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000334961	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000334961	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000353887	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000353887	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000353887	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000361166	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000361166	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000361166	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000397789	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000397789	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000397789	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000361676	ENST00000249636		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
In-frame	ENST00000361676	ENST00000545237		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
5CDS-intron	ENST00000361676	ENST00000567417		TCGA	RV	MESO	TCGA-LK-A4O7-01A	NF2	chr22	30000101	+	PIAS1	chr15	68378644	+
Frame-shit	ENST00000375244	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375244	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375244	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375244	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375244	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375244	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000451343	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000451343	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000451343	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000451343	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000451343	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000451343	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375247	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375247	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375247	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
Frame-shit	ENST00000375247	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-3UTR	ENST00000375247	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5CDS-intron	ENST00000375247	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000479795	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000479795	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000479795	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000479795	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000479795	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000479795	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000433037	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000433037	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000433037	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000433037	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000433037	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000433037	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549232	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549232	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549232	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549232	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549232	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549232	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000383159	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000383159	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000383159	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000383159	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000383159	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000383159	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000489006	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000489006	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000489006	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000489006	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000489006	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000489006	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000469250	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000469250	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000469250	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000469250	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000469250	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000469250	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000440248	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000440248	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000440248	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000440248	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000440248	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000440248	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550212	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550212	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550212	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550212	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550212	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550212	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548649	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548649	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548649	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548649	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548649	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548649	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000424718	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000424718	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000424718	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000424718	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000424718	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000424718	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000475986	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000475986	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000475986	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000475986	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000475986	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000475986	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550539	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550539	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550539	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000550539	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000550539	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000550539	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000471059	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000471059	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000471059	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000471059	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000471059	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000471059	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551808	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551808	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551808	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551808	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551808	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551808	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548628	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548628	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548628	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000548628	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000548628	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000548628	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549652	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549652	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549652	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000549652	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000549652	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000549652	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000553092	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000553092	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000553092	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000553092	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000553092	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000553092	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552665	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552665	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552665	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552665	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552665	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552665	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000465958	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000465958	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000465958	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000465958	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000465958	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000465958	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000546684	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000546684	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000546684	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000546684	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000546684	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000546684	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000464376	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000464376	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000464376	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000464376	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000464376	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000464376	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552149	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552149	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552149	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000552149	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000552149	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000552149	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551201	ENST00000324771		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551201	ENST00000418800		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551201	ENST00000454612		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3CDS	ENST00000551201	ENST00000376569		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000446312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000376575		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000376570		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000376568		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000452441		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000508312		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000376567		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-3UTR	ENST00000551201	ENST00000513240		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000508472		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000361741		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000434428		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000483193		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000383377		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000259875		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000552721		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000553015		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000468225		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400411		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400410		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000412329		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000449518		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000427053		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000548962		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000548133		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000462241		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000415092		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000453510		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000550666		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000488414		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000422628		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400492		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400491		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400489		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000549026		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000550395		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000490712		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400488		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000400486		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000552434		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000430933		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000429699		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000421229		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000550384		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000552068		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000487780		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000454774		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000419412		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
intron-intron	ENST00000551201	ENST00000548693		TCGA	RV	MESO	TCGA-SH-A7BD-01A	TNXB	chr6	32029174	-	DDR1	chr6	30865156	+
5UTR-3CDS	ENST00000356406	ENST00000361099		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-3CDS	ENST00000356406	ENST00000409465		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-intron	ENST00000356406	ENST00000540176		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-intron	ENST00000356406	ENST00000392322		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-intron	ENST00000356406	ENST00000392323		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-3CDS	ENST00000413009	ENST00000361099		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-3CDS	ENST00000413009	ENST00000409465		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-intron	ENST00000413009	ENST00000540176		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-intron	ENST00000413009	ENST00000392322		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
5UTR-intron	ENST00000413009	ENST00000392323		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-3CDS	ENST00000503233	ENST00000361099		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-3CDS	ENST00000503233	ENST00000409465		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-intron	ENST00000503233	ENST00000540176		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-intron	ENST00000503233	ENST00000392322		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-intron	ENST00000503233	ENST00000392323		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-3CDS	ENST00000515797	ENST00000361099		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-3CDS	ENST00000515797	ENST00000409465		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-intron	ENST00000515797	ENST00000540176		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-intron	ENST00000515797	ENST00000392322		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
intron-intron	ENST00000515797	ENST00000392323		TCGA	RV	MESO	TCGA-TS-A7P8-01A	ACOX3	chr4	8442375	-	STAT1	chr2	191863034	-
Frame-shit	ENST00000442111	ENST00000466387		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000442111	ENST00000496558		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000442111	ENST00000361291		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000442111	ENST00000402739		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000442111	ENST00000540488		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000442111	ENST00000541047		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000442111	ENST00000343114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000442111	ENST00000496251		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000442111	ENST00000409266		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000466387		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000496558		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000361291		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000402739		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000540488		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000541047		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000281703	ENST00000343114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000281703	ENST00000496251		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
5CDS-intron	ENST00000281703	ENST00000409266		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000466387		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000496558		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000361291		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000402739		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000540488		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000541047		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000537468	ENST00000343114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-intron	ENST00000537468	ENST00000496251		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-intron	ENST00000537468	ENST00000409266		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000466387		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000496558		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000361291		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000402739		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000540488		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000541047		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-3CDS	ENST00000542193	ENST00000343114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-intron	ENST00000542193	ENST00000496251		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
intron-intron	ENST00000542193	ENST00000409266		TCGA	RV	MESO	TCGA-TS-A8AY-01A	GLT1D1	chr12	129338194	+	CTNNA2	chr2	80772107	+
Frame-shit	ENST00000320201	ENST00000434735		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000320201	ENST00000342494		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000535089		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000280774		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000536398		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000340074		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000540230		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000537063		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000320201	ENST00000535900		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000392428	ENST00000434735		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000392428	ENST00000342494		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000535089		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000280774		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000536398		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000340074		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000540230		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000537063		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000392428	ENST00000535900		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000280562	ENST00000434735		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000280562	ENST00000342494		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000535089		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000280774		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000536398		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000340074		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000540230		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000537063		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000280562	ENST00000535900		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000542749	ENST00000434735		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000542749	ENST00000342494		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000535089		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000280774		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000536398		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000340074		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000540230		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000537063		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000542749	ENST00000535900		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000546049	ENST00000434735		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000546049	ENST00000342494		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000535089		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000280774		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000536398		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000340074		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000540230		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000537063		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5CDS-intron	ENST00000546049	ENST00000535900		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-3CDS	ENST00000451868	ENST00000434735		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-3CDS	ENST00000451868	ENST00000342494		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000535089		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000280774		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000536398		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000340074		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000540230		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000537063		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
5UTR-intron	ENST00000451868	ENST00000535900		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PITPNM2	chr12	123519060	-	UBE3B	chr12	109935623	+
Frame-shit	ENST00000392837	ENST00000392842		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
Frame-shit	ENST00000392837	ENST00000357881		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
Frame-shit	ENST00000392837	ENST00000229387		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
Frame-shit	ENST00000392839	ENST00000392842		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
Frame-shit	ENST00000392839	ENST00000357881		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
Frame-shit	ENST00000392839	ENST00000229387		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
5UTR-3CDS	ENST00000355478	ENST00000392842		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
5UTR-3CDS	ENST00000355478	ENST00000357881		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
5UTR-3CDS	ENST00000355478	ENST00000229387		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
intron-3CDS	ENST00000549643	ENST00000392842		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
intron-3CDS	ENST00000549643	ENST00000357881		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
intron-3CDS	ENST00000549643	ENST00000229387		TCGA	RV	MESO	TCGA-SC-A6LM-01A	RIC8B	chr12	107177822	+	RFX4	chr12	107141215	+
Frame-shit	ENST00000409792	ENST00000217246		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
Frame-shit	ENST00000409792	ENST00000310348		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5CDS-intron	ENST00000409792	ENST00000464883		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5CDS-intron	ENST00000409792	ENST00000402914		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5CDS-intron	ENST00000409792	ENST00000378058		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5CDS-intron	ENST00000409792	ENST00000407045		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5UTR-3CDS	ENST00000492397	ENST00000217246		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5UTR-3CDS	ENST00000492397	ENST00000310348		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5UTR-intron	ENST00000492397	ENST00000464883		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5UTR-intron	ENST00000492397	ENST00000402914		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5UTR-intron	ENST00000492397	ENST00000378058		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5UTR-intron	ENST00000492397	ENST00000407045		TCGA	RV	MESO	TCGA-SC-A6LM-01A	SETD2	chr3	47125210	-	MACROD2	chr20	14066267	+
5CDS-intron	ENST00000543117	ENST00000275532		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000543117	ENST00000443322		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000543117	ENST00000510829		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000543117	ENST00000380828		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000543117	ENST00000451741		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000265393	ENST00000275532		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000265393	ENST00000443322		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000265393	ENST00000510829		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000265393	ENST00000380828		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000265393	ENST00000451741		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000409980	ENST00000275532		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000409980	ENST00000443322		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000409980	ENST00000510829		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000409980	ENST00000380828		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000409980	ENST00000451741		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000433216	ENST00000275532		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000433216	ENST00000443322		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000433216	ENST00000510829		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000433216	ENST00000380828		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000433216	ENST00000451741		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000396319	ENST00000275532		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000396319	ENST00000443322		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000396319	ENST00000510829		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000396319	ENST00000380828		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5CDS-intron	ENST00000396319	ENST00000451741		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
3UTR-intron	ENST00000494033	ENST00000275532		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
3UTR-intron	ENST00000494033	ENST00000443322		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
3UTR-intron	ENST00000494033	ENST00000510829		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
3UTR-intron	ENST00000494033	ENST00000380828		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
3UTR-intron	ENST00000494033	ENST00000451741		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	KCTD7	chr7	66260498	+
5UTR-3CDS	ENST00000366601	ENST00000366630		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-3CDS	ENST00000366601	ENST00000262861		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-intron	ENST00000366601	ENST00000308942		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-intron	ENST00000366601	ENST00000486472		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-3CDS	ENST00000406207	ENST00000366630		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-3CDS	ENST00000406207	ENST00000262861		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-intron	ENST00000406207	ENST00000308942		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-intron	ENST00000406207	ENST00000486472		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-3CDS	ENST00000543662	ENST00000366630		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-3CDS	ENST00000543662	ENST00000262861		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-intron	ENST00000543662	ENST00000308942		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
5UTR-intron	ENST00000543662	ENST00000486472		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
3UTR-3CDS	ENST00000472011	ENST00000366630		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
3UTR-3CDS	ENST00000472011	ENST00000262861		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
3UTR-intron	ENST00000472011	ENST00000308942		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
3UTR-intron	ENST00000472011	ENST00000486472		TCGA	RV	MESO	TCGA-SH-A9CU-01A	TBCE	chr1	235530819	+	SIPA1L2	chr1	232629406	-
Frame-shit	ENST00000372899	ENST00000265350		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000372899	ENST00000467535		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000372899	ENST00000409312		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000372899	ENST00000409060		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
Frame-shit	ENST00000372901	ENST00000265350		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000372901	ENST00000467535		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000372901	ENST00000409312		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000372901	ENST00000409060		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
3UTR-3CDS	ENST00000372883	ENST00000265350		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
3UTR-5UTR	ENST00000372883	ENST00000467535		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
3UTR-5UTR	ENST00000372883	ENST00000409312		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
3UTR-5UTR	ENST00000372883	ENST00000409060		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
intron-3CDS	ENST00000372903	ENST00000265350		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
intron-5UTR	ENST00000372903	ENST00000467535		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
intron-5UTR	ENST00000372903	ENST00000409312		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
intron-5UTR	ENST00000372903	ENST00000409060		TCGA	RV	MESO	TCGA-TS-A8AY-01A	UBR2	chr6	42647570	+	MED20	chr6	41877260	-
In-frame	ENST00000536306	ENST00000248594		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
In-frame	ENST00000536306	ENST00000415482		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
In-frame	ENST00000536306	ENST00000435495		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
In-frame	ENST00000543897	ENST00000248594		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
In-frame	ENST00000543897	ENST00000415482		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
In-frame	ENST00000543897	ENST00000435495		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
Frame-shit	ENST00000336229	ENST00000248594		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
Frame-shit	ENST00000336229	ENST00000415482		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
Frame-shit	ENST00000336229	ENST00000435495		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
intron-3CDS	ENST00000538116	ENST00000248594		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
intron-3CDS	ENST00000538116	ENST00000415482		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
intron-3CDS	ENST00000538116	ENST00000435495		TCGA	RV	MESO	TCGA-3H-AB3M-01A	ZCCHC8	chr12	122964737	-	PTPN12	chr7	77261665	+
3UTR-3CDS	ENST00000471014	ENST00000266037		TCGA	RV	MESO	TCGA-YS-A95C-01A	CTNNB1	chr3	41280845	+	DOCK3	chr3	50927457	+
Frame-shit	ENST00000405570	ENST00000266037		TCGA	RV	MESO	TCGA-YS-A95C-01A	CTNNB1	chr3	41280845	+	DOCK3	chr3	50927457	+
3UTR-3CDS	ENST00000396183	ENST00000266037		TCGA	RV	MESO	TCGA-YS-A95C-01A	CTNNB1	chr3	41280845	+	DOCK3	chr3	50927457	+
3UTR-3CDS	ENST00000349496	ENST00000266037		TCGA	RV	MESO	TCGA-YS-A95C-01A	CTNNB1	chr3	41280845	+	DOCK3	chr3	50927457	+
3UTR-3CDS	ENST00000453024	ENST00000266037		TCGA	RV	MESO	TCGA-YS-A95C-01A	CTNNB1	chr3	41280845	+	DOCK3	chr3	50927457	+
3UTR-3CDS	ENST00000396185	ENST00000266037		TCGA	RV	MESO	TCGA-YS-A95C-01A	CTNNB1	chr3	41280845	+	DOCK3	chr3	50927457	+
In-frame	ENST00000478968	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000478968	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000478968	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000478968	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000478968	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5CDS-intron	ENST00000478968	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000394783	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000394783	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000394783	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000394783	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000394783	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5CDS-intron	ENST00000394783	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000407584	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000407584	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000407584	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000407584	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000407584	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5CDS-intron	ENST00000407584	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000266014	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000266014	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000266014	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000266014	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000266014	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5CDS-intron	ENST00000266014	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000491606	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000491606	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
In-frame	ENST00000491606	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000491606	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
Frame-shit	ENST00000491606	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5CDS-intron	ENST00000491606	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5UTR-3CDS	ENST00000463827	ENST00000296440		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5UTR-3CDS	ENST00000463827	ENST00000358459		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5UTR-3CDS	ENST00000463827	ENST00000358536		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5UTR-3CDS	ENST00000463827	ENST00000448774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5UTR-3CDS	ENST00000463827	ENST00000456774		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5UTR-intron	ENST00000463827	ENST00000465117		TCGA	RV	MESO	TCGA-UD-AABY-01A	GLT8D1	chr3	52729206	-	PLXNB1	chr3	48445997	-
5CDS-intron	ENST00000326245	ENST00000322776		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000326245	ENST00000532303		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000326245	ENST00000529927		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000326245	ENST00000415352		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000326245	ENST00000526169		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000487531	ENST00000322776		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000487531	ENST00000532303		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000487531	ENST00000529927		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000487531	ENST00000415352		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000487531	ENST00000526169		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	ITLN1	chr1	160846329	-	NDUFV1	chr11	67375697	+
In-frame	ENST00000394773	ENST00000330574		TCGA	RV	MESO	TCGA-TS-A7P0-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000278845	ENST00000330574		TCGA	RV	MESO	TCGA-TS-A7P0-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
Frame-shit	ENST00000531557	ENST00000330574		TCGA	RV	MESO	TCGA-TS-A7P0-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000494176	ENST00000330574		TCGA	RV	MESO	TCGA-TS-A7P0-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000529309	ENST00000330574		TCGA	RV	MESO	TCGA-TS-A7P0-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
intron-3CDS	ENST00000438258	ENST00000330574		TCGA	RV	MESO	TCGA-TS-A7P0-01A	EML3	chr11	62372585	-	INTS5	chr11	62417471	-
In-frame	ENST00000563941	ENST00000356136		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
In-frame	ENST00000563941	ENST00000528420		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000563941	ENST00000533454		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000563941	ENST00000531818		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000563941	ENST00000532130		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000563941	ENST00000539288		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000563941	ENST00000525872		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000563941	ENST00000538870		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000545450	ENST00000356136		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000545450	ENST00000528420		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000545450	ENST00000533454		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000545450	ENST00000531818		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000545450	ENST00000532130		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000545450	ENST00000539288		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000545450	ENST00000525872		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000545450	ENST00000538870		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
In-frame	ENST00000566549	ENST00000356136		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
In-frame	ENST00000566549	ENST00000528420		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000566549	ENST00000533454		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000566549	ENST00000531818		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000566549	ENST00000532130		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000566549	ENST00000539288		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000566549	ENST00000525872		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000566549	ENST00000538870		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000382862	ENST00000356136		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000382862	ENST00000528420		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000382862	ENST00000533454		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000382862	ENST00000531818		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000382862	ENST00000532130		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000382862	ENST00000539288		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000382862	ENST00000525872		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000382862	ENST00000538870		TCGA	RV	MESO	TCGA-LK-A4NZ-01A	MSLN	chr16	818865	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000342287	ENST00000380607		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-intron	ENST00000342287	ENST00000467085		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-5UTR	ENST00000342287	ENST00000537391		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
Frame-shit	ENST00000373487	ENST00000380607		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-intron	ENST00000373487	ENST00000467085		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-5UTR	ENST00000373487	ENST00000537391		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
Frame-shit	ENST00000373489	ENST00000380607		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-intron	ENST00000373489	ENST00000467085		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-5UTR	ENST00000373489	ENST00000537391		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5UTR-3CDS	ENST00000373483	ENST00000380607		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5UTR-intron	ENST00000373483	ENST00000467085		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5UTR-5UTR	ENST00000373483	ENST00000537391		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
Frame-shit	ENST00000447726	ENST00000380607		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-intron	ENST00000447726	ENST00000467085		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
5CDS-5UTR	ENST00000447726	ENST00000537391		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
intron-3CDS	ENST00000538998	ENST00000380607		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
intron-intron	ENST00000538998	ENST00000467085		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
intron-5UTR	ENST00000538998	ENST00000537391		TCGA	RV	MESO	TCGA-LK-A4O5-01A	PBX3	chr9	128510902	+	SH3GL2	chr9	17747064	+
In-frame	ENST00000260402	ENST00000221214		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
In-frame	ENST00000260402	ENST00000457542		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000260402	ENST00000260357		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000260402	ENST00000456763		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000260402	ENST00000514566		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-3UTR	ENST00000260402	ENST00000507762		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
In-frame	ENST00000557821	ENST00000221214		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
In-frame	ENST00000557821	ENST00000457542		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000557821	ENST00000260357		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000557821	ENST00000456763		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000557821	ENST00000514566		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-3UTR	ENST00000557821	ENST00000507762		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
In-frame	ENST00000456256	ENST00000221214		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
In-frame	ENST00000456256	ENST00000457542		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000456256	ENST00000260357		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000456256	ENST00000456763		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000456256	ENST00000514566		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-3UTR	ENST00000456256	ENST00000507762		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
intron-3CDS	ENST00000543785	ENST00000221214		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
intron-3CDS	ENST00000543785	ENST00000457542		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
intron-intron	ENST00000543785	ENST00000260357		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
intron-intron	ENST00000543785	ENST00000456763		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
intron-intron	ENST00000543785	ENST00000514566		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
intron-3UTR	ENST00000543785	ENST00000507762		TCGA	RV	MESO	TCGA-3H-AB3M-01A	PLCB2	chr15	40581473	-	MAPKBP1	chr15	42092021	+
5CDS-intron	ENST00000296440	ENST00000416872		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000296440	ENST00000449956		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000296440	ENST00000465243		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000358459	ENST00000416872		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000358459	ENST00000449956		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000358459	ENST00000465243		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000358536	ENST00000416872		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000358536	ENST00000449956		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000358536	ENST00000465243		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
intron-intron	ENST00000448774	ENST00000416872		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
intron-intron	ENST00000448774	ENST00000449956		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
intron-intron	ENST00000448774	ENST00000465243		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000456774	ENST00000416872		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000456774	ENST00000449956		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
5CDS-intron	ENST00000456774	ENST00000465243		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
intron-intron	ENST00000465117	ENST00000416872		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
intron-intron	ENST00000465117	ENST00000449956		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
intron-intron	ENST00000465117	ENST00000465243		TCGA	RV	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48463083	-	ITIH3	chr3	52838742	+
Frame-shit	ENST00000518852	ENST00000356766		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000518852	ENST00000521356		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000518852	ENST00000454009		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000240139	ENST00000356766		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000240139	ENST00000521356		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000240139	ENST00000454009		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000289963	ENST00000356766		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000289963	ENST00000521356		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000289963	ENST00000454009		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000397775	ENST00000356766		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000397775	ENST00000521356		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000397775	ENST00000454009		TCGA	RV	MESO	TCGA-TS-A7P7-01A	PPP3CC	chr8	22370945	+	PIWIL2	chr8	22210472	+
In-frame	ENST00000409792	ENST00000479054		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
In-frame	ENST00000409792	ENST00000345716		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
In-frame	ENST00000409792	ENST00000488380		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
In-frame	ENST00000409792	ENST00000420808		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
5CDS-intron	ENST00000409792	ENST00000464280		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
5UTR-3CDS	ENST00000492397	ENST00000479054		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
5UTR-3CDS	ENST00000492397	ENST00000345716		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
5UTR-3CDS	ENST00000492397	ENST00000488380		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
5UTR-3CDS	ENST00000492397	ENST00000420808		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
5UTR-intron	ENST00000492397	ENST00000464280		TCGA	RV	MESO	TCGA-ZN-A9VO-01A	SETD2	chr3	47125210	-	NISCH	chr3	52504875	+
Frame-shit	ENST00000332047	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000332047	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000354446	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000354446	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000337090	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000337090	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
intron-3CDS	ENST00000504013	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
intron-3CDS	ENST00000504013	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000383229	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000383229	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000513612	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000513612	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000606977	ENST00000264167		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
Frame-shit	ENST00000606977	ENST00000409888		TCGA	RV	MESO	TCGA-3H-AB3S-01A	CEP63	chr3	134270854	+	AGPS	chr2	178402802	+
In-frame	ENST00000313899	ENST00000264399		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000313899	ENST00000395578		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000313899	ENST00000418486		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000313899	ENST00000545647		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
5CDS-5UTR	ENST00000313899	ENST00000509169		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000353341	ENST00000264399		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000353341	ENST00000395578		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000353341	ENST00000418486		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
In-frame	ENST00000353341	ENST00000545647		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
5CDS-5UTR	ENST00000353341	ENST00000509169		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000543098	ENST00000264399		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000543098	ENST00000395578		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000543098	ENST00000418486		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000543098	ENST00000545647		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-5UTR	ENST00000543098	ENST00000509169		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000352301	ENST00000264399		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000352301	ENST00000395578		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000352301	ENST00000418486		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000352301	ENST00000545647		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-5UTR	ENST00000352301	ENST00000509169		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000508119	ENST00000264399		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000508119	ENST00000395578		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000508119	ENST00000418486		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000508119	ENST00000545647		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-5UTR	ENST00000508119	ENST00000509169		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000541060	ENST00000264399		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000541060	ENST00000395578		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000541060	ENST00000418486		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-3CDS	ENST00000541060	ENST00000545647		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
intron-5UTR	ENST00000541060	ENST00000509169		TCGA	RV	MESO	TCGA-TS-A8AF-01A	HNRNPD	chr4	83292681	-	PRKG2	chr4	82031765	-
5CDS-3UTR	ENST00000326245	ENST00000052754		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-3UTR	ENST00000326245	ENST00000425043		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-3UTR	ENST00000326245	ENST00000393155		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-3UTR	ENST00000326245	ENST00000228329		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-3UTR	ENST00000326245	ENST00000303320		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000552962		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000441303		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000420120		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000547568		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000456569		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000546370		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000546745		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000550099		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000551354		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5CDS-intron	ENST00000326245	ENST00000548768		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-3UTR	ENST00000487531	ENST00000052754		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-3UTR	ENST00000487531	ENST00000425043		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-3UTR	ENST00000487531	ENST00000393155		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-3UTR	ENST00000487531	ENST00000228329		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-3UTR	ENST00000487531	ENST00000303320		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000552962		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000441303		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000420120		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000547568		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000456569		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000546370		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000546745		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000550099		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000551354		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
intron-intron	ENST00000487531	ENST00000548768		TCGA	RV	MESO	TCGA-MQ-A4LI-01A	ITLN1	chr1	160846329	-	DCN	chr12	91539511	-
5UTR-3CDS	ENST00000300557	ENST00000536708		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	PRR15L	chr17	46035023	-	CDK5RAP3	chr17	46050885	+
5UTR-3CDS	ENST00000300557	ENST00000338399		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	PRR15L	chr17	46035023	-	CDK5RAP3	chr17	46050885	+
5UTR-intron	ENST00000300557	ENST00000578663		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	PRR15L	chr17	46035023	-	CDK5RAP3	chr17	46050885	+
5CDS-intron	ENST00000414563	ENST00000539068		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-5UTR	ENST00000414563	ENST00000536438		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000414563	ENST00000357266		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000414563	ENST00000540787		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000414563	ENST00000542713		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359775	ENST00000539068		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-5UTR	ENST00000359775	ENST00000536438		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359775	ENST00000357266		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359775	ENST00000540787		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359775	ENST00000542713		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000341375	ENST00000539068		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000341375	ENST00000536438		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000341375	ENST00000357266		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000341375	ENST00000540787		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000341375	ENST00000542713		TCGA	RV	MESO	TCGA-TS-A7P1-01A	ZDHHC14	chr6	157803298	+	FKBP5	chr6	35688325	-
5CDS-5UTR	ENST00000367328	ENST00000282561		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PLEKHG1	chr6	151089874	+	GJA1	chr6	121767978	+
5CDS-5UTR	ENST00000358517	ENST00000282561		TCGA	RV	MESO	TCGA-SC-A6LM-01A	PLEKHG1	chr6	151089874	+	GJA1	chr6	121767978	+
5UTR-3CDS	ENST00000323146	ENST00000378017		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-3CDS	ENST00000323146	ENST00000518547		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-5UTR	ENST00000323146	ENST00000354184		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000323146	ENST00000395508		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000323146	ENST00000325064		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000323146	ENST00000431961		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000323146	ENST00000523587		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000323146	ENST00000524090		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-3CDS	ENST00000508770	ENST00000378017		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-3CDS	ENST00000508770	ENST00000518547		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-5UTR	ENST00000508770	ENST00000354184		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-intron	ENST00000508770	ENST00000395508		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-intron	ENST00000508770	ENST00000325064		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-intron	ENST00000508770	ENST00000431961		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-intron	ENST00000508770	ENST00000523587		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
3UTR-intron	ENST00000508770	ENST00000524090		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-3CDS	ENST00000514199	ENST00000378017		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-3CDS	ENST00000514199	ENST00000518547		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-5UTR	ENST00000514199	ENST00000354184		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000514199	ENST00000395508		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000514199	ENST00000325064		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000514199	ENST00000431961		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000514199	ENST00000523587		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
5UTR-intron	ENST00000514199	ENST00000524090		TCGA	RV	MESO	TCGA-TS-A7P0-01A	SLC35A4	chr5	139945556	+	MTSS1	chr8	125603476	-
intron-3CDS	ENST00000495222	ENST00000356175		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-3CDS	ENST00000495222	ENST00000358273		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000495222	ENST00000431387		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000495222	ENST00000581113		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000495222	ENST00000417592		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000495222	ENST00000444181		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000235532	ENST00000356175		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000235532	ENST00000358273		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000235532	ENST00000431387		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000235532	ENST00000581113		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000235532	ENST00000417592		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000235532	ENST00000444181		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000356637	ENST00000356175		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000356637	ENST00000358273		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000356637	ENST00000431387		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000356637	ENST00000581113		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000356637	ENST00000417592		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000356637	ENST00000444181		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-3CDS	ENST00000433045	ENST00000356175		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-3CDS	ENST00000433045	ENST00000358273		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000433045	ENST00000431387		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000433045	ENST00000581113		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000433045	ENST00000417592		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-intron	ENST00000433045	ENST00000444181		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000315643	ENST00000356175		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000315643	ENST00000358273		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000315643	ENST00000431387		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000315643	ENST00000581113		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000315643	ENST00000417592		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000315643	ENST00000444181		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000354267	ENST00000356175		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
In-frame	ENST00000354267	ENST00000358273		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000354267	ENST00000431387		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000354267	ENST00000581113		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000354267	ENST00000417592		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
5CDS-intron	ENST00000354267	ENST00000444181		TCGA	RV	MESO	TCGA-UD-AAC4-01A	OSCP1	chr1	36915859	-	NF1	chr17	29701031	+
intron-3CDS	ENST00000535814	ENST00000398805		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-3CDS	ENST00000535814	ENST00000398803		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-intron	ENST00000535814	ENST00000488101		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-intron	ENST00000535814	ENST00000262542		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-5UTR	ENST00000535814	ENST00000539114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-3CDS	ENST00000374902	ENST00000398805		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-3CDS	ENST00000374902	ENST00000398803		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-intron	ENST00000374902	ENST00000488101		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-intron	ENST00000374902	ENST00000262542		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-5UTR	ENST00000374902	ENST00000539114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-3CDS	ENST00000477648	ENST00000398805		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-3CDS	ENST00000477648	ENST00000398803		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-intron	ENST00000477648	ENST00000488101		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-intron	ENST00000477648	ENST00000262542		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-5UTR	ENST00000477648	ENST00000539114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-3CDS	ENST00000537512	ENST00000398805		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-3CDS	ENST00000537512	ENST00000398803		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-intron	ENST00000537512	ENST00000488101		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-intron	ENST00000537512	ENST00000262542		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
5UTR-5UTR	ENST00000537512	ENST00000539114		TCGA	RV	MESO	TCGA-TS-A8AY-01A	TEX10	chr9	103115054	-	HSDL2	chr9	115166275	+
intron-5UTR	ENST00000352456	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000352456	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000352456	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000352456	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000352456	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000352456	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000352456	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000352456	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000595018	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000595018	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000595018	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000595018	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000595018	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000595018	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000595018	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000595018	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-5UTR	ENST00000392006	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000392006	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-5UTR	ENST00000392006	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000392006	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000392006	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000392006	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000392006	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000392006	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000378215	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000378215	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000378215	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000378215	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000378215	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000378215	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000378215	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000378215	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-5UTR	ENST00000602130	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000602130	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-5UTR	ENST00000602130	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000602130	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000602130	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000602130	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000602130	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5CDS-intron	ENST00000602130	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000593587	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000593587	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000593587	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000593587	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000593587	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000593587	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000593587	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000593587	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000263367	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000263367	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000263367	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000263367	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000263367	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000263367	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000263367	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000263367	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000594207	ENST00000485760		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000594207	ENST00000371236		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-5UTR	ENST00000594207	ENST00000371234		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000594207	ENST00000420954		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000594207	ENST00000439789		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000594207	ENST00000414851		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000594207	ENST00000371231		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
intron-intron	ENST00000594207	ENST00000371230		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41770598	+	DAB1	chr1	58349834	-
5UTR-intron	ENST00000394752	ENST00000466084		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000394752	ENST00000296127		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000394752	ENST00000424952		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000394752	ENST00000342790		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-intron	ENST00000394750	ENST00000466084		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000394750	ENST00000296127		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000394750	ENST00000424952		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000394750	ENST00000342790		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-intron	ENST00000358080	ENST00000466084		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000358080	ENST00000296127		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000358080	ENST00000424952		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000358080	ENST00000342790		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-intron	ENST00000296295	ENST00000466084		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000296295	ENST00000296127		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000296295	ENST00000424952		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
5UTR-5UTR	ENST00000296295	ENST00000342790		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-intron	ENST00000470575	ENST00000466084		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000470575	ENST00000296127		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000470575	ENST00000424952		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000470575	ENST00000342790		TCGA	RV	MESO	TCGA-ZN-A9VU-01A	SFMBT1	chr3	53079832	-	ZDHHC3	chr3	45000952	-
In-frame	ENST00000382100	ENST00000262352		TCGA	RV	MESO	TCGA-SH-A7BC-01A	VLDLR	chr9	2622271	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000382100	ENST00000490167		TCGA	RV	MESO	TCGA-SH-A7BC-01A	VLDLR	chr9	2622271	+	SLC1A1	chr9	4544567	+
In-frame	ENST00000382099	ENST00000262352		TCGA	RV	MESO	TCGA-SH-A7BC-01A	VLDLR	chr9	2622271	+	SLC1A1	chr9	4544567	+
5CDS-intron	ENST00000382099	ENST00000490167		TCGA	RV	MESO	TCGA-SH-A7BC-01A	VLDLR	chr9	2622271	+	SLC1A1	chr9	4544567	+
intron-3CDS	ENST00000478776	ENST00000262352		TCGA	RV	MESO	TCGA-SH-A7BC-01A	VLDLR	chr9	2622271	+	SLC1A1	chr9	4544567	+
intron-intron	ENST00000478776	ENST00000490167		TCGA	RV	MESO	TCGA-SH-A7BC-01A	VLDLR	chr9	2622271	+	SLC1A1	chr9	4544567	+
intron-3CDS	ENST00000358621	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000358621	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
Frame-shit	ENST00000357447	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000357447	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
Frame-shit	ENST00000378503	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000378503	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-3CDS	ENST00000342409	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000342409	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
Frame-shit	ENST00000493380	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000493380	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
Frame-shit	ENST00000475141	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
5CDS-5UTR	ENST00000475141	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-3CDS	ENST00000492155	ENST00000181796		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000378470		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000468747		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000378467		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000378465		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000378458		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000478076		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000378462		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000496330		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000479731		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
intron-5UTR	ENST00000492155	ENST00000471815		TCGA	RV	MESO	TCGA-TS-A8AI-01A	FRMD4A	chr10	14372057	-	FAM107B	chr10	14572514	-
Frame-shit	ENST00000398805	ENST00000535814		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000398805	ENST00000374902		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-intron	ENST00000398805	ENST00000477648		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-intron	ENST00000398805	ENST00000537512		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
Frame-shit	ENST00000398803	ENST00000535814		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-5UTR	ENST00000398803	ENST00000374902		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-intron	ENST00000398803	ENST00000477648		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-intron	ENST00000398803	ENST00000537512		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
3UTR-3CDS	ENST00000488101	ENST00000535814		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
3UTR-5UTR	ENST00000488101	ENST00000374902		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
3UTR-intron	ENST00000488101	ENST00000477648		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
3UTR-intron	ENST00000488101	ENST00000537512		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-3CDS	ENST00000262542	ENST00000535814		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-5UTR	ENST00000262542	ENST00000374902		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-intron	ENST00000262542	ENST00000477648		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-intron	ENST00000262542	ENST00000537512		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-3CDS	ENST00000539114	ENST00000535814		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-5UTR	ENST00000539114	ENST00000374902		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-intron	ENST00000539114	ENST00000477648		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5UTR-intron	ENST00000539114	ENST00000537512		TCGA	RV	MESO	TCGA-TS-A8AY-01A	HSDL2	chr9	115142460	+	TEX10	chr9	103111654	-
5CDS-intron	ENST00000361566	ENST00000313164		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	KRT19	chr17	39679869	-	C7	chr5	40954982	+
5CDS-intron	ENST00000361566	ENST00000494960		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	KRT19	chr17	39679869	-	C7	chr5	40954982	+
5UTR-3CDS	ENST00000369981	ENST00000298248		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-3CDS	ENST00000369981	ENST00000382812		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-intron	ENST00000369981	ENST00000480748		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-3CDS	ENST00000369985	ENST00000298248		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-3CDS	ENST00000369985	ENST00000382812		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-intron	ENST00000369985	ENST00000480748		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-3CDS	ENST00000369977	ENST00000298248		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-3CDS	ENST00000369977	ENST00000382812		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5UTR-intron	ENST00000369977	ENST00000480748		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
intron-3CDS	ENST00000369975	ENST00000298248		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
intron-3CDS	ENST00000369975	ENST00000382812		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
intron-intron	ENST00000369975	ENST00000480748		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
intron-3CDS	ENST00000462633	ENST00000298248		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
intron-3CDS	ENST00000462633	ENST00000382812		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
intron-intron	ENST00000462633	ENST00000480748		TCGA	RV	MESO	TCGA-MQ-A4KX-01A	MYO6	chr6	76459140	+	CRYL1	chr13	20987526	-
5CDS-5UTR	ENST00000502288	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000502288	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000502288	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000502288	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000502288	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000502288	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000502288	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000507874	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000507874	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000507874	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000507874	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000507874	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000507874	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000341181	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000341181	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000341181	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000341181	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000341181	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000341181	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000437922	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000437922	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000437922	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000437922	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000437922	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000437922	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394180	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394180	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394180	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394180	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394180	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394180	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000503004	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000503004	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000503004	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000503004	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000503004	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000503004	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394185	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394185	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394185	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394185	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394185	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394185	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000394181	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394181	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394181	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394181	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394181	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000394181	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000510545	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000510545	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000510545	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000510545	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000510545	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000510545	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000511081	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000511081	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000511081	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000511081	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000511081	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-intron	ENST00000511081	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-5UTR	ENST00000513287	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000513287	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000513287	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000513287	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000513287	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
intron-intron	ENST00000513287	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000458225		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000337271		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000444190		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000187397		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000417925		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000428373		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000427542		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000474696		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000412048		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000396482		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-5UTR	ENST00000508503	ENST00000432682		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000508503	ENST00000396481		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000508503	ENST00000441454		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000508503	ENST00000436702		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000508503	ENST00000438071		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5UTR-intron	ENST00000508503	ENST00000476052		TCGA	RV	MESO	TCGA-TS-A7P3-01A	CLDND1	chr3	98241693	-	ARPP21	chr3	35721279	+
5CDS-5UTR	ENST00000283558	ENST00000537875		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000283558	ENST00000309791		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000283558	ENST00000297848		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000283558	ENST00000247781		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-3UTR	ENST00000283558	ENST00000432943		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375630	ENST00000537875		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375630	ENST00000309791		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375630	ENST00000297848		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375630	ENST00000247781		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-3UTR	ENST00000375630	ENST00000432943		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000487903	ENST00000537875		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000487903	ENST00000309791		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000487903	ENST00000297848		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000487903	ENST00000247781		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-3UTR	ENST00000487903	ENST00000432943		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375645	ENST00000537875		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375645	ENST00000309791		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375645	ENST00000297848		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-5UTR	ENST00000375645	ENST00000247781		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
5CDS-3UTR	ENST00000375645	ENST00000432943		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
intron-5UTR	ENST00000419448	ENST00000537875		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
intron-5UTR	ENST00000419448	ENST00000309791		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
intron-5UTR	ENST00000419448	ENST00000297848		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
intron-5UTR	ENST00000419448	ENST00000247781		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
intron-3UTR	ENST00000419448	ENST00000432943		TCGA	RV	MESO	TCGA-3U-A98D-01A	ATP11A	chr13	113344769	+	COL14A1	chr8	121160045	+
In-frame	ENST00000281141	ENST00000360289		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000281141	ENST00000448642		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000281141	ENST00000404387		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000281141	ENST00000298649		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000281141	ENST00000359426		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
5CDS-3UTR	ENST00000281141	ENST00000494253		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
3UTR-3CDS	ENST00000455773	ENST00000360289		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
3UTR-3CDS	ENST00000455773	ENST00000448642		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
3UTR-3CDS	ENST00000455773	ENST00000404387		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
3UTR-3CDS	ENST00000455773	ENST00000298649		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
3UTR-3CDS	ENST00000455773	ENST00000359426		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
3UTR-3UTR	ENST00000455773	ENST00000494253		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000378900	ENST00000360289		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000378900	ENST00000448642		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000378900	ENST00000404387		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000378900	ENST00000298649		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
In-frame	ENST00000378900	ENST00000359426		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
5CDS-3UTR	ENST00000378900	ENST00000494253		TCGA	RV	MESO	TCGA-SH-A7BD-01A	CDC123	chr10	12240775	+	HK1	chr10	71136690	+
intron-3UTR	ENST00000394003	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000394003	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000394003	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000361874	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000361874	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000361874	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000407639	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000407639	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000407639	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000409438	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000409438	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000409438	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3UTR	ENST00000409240	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3UTR	ENST00000409240	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3UTR	ENST00000409240	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3UTR	ENST00000409868	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3UTR	ENST00000409868	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3UTR	ENST00000409868	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000409567	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000409567	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000409567	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000495643	ENST00000461531		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000495643	ENST00000409791		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
intron-3UTR	ENST00000495643	ENST00000348227		TCGA	RV	MESO	TCGA-SH-A7BD-01A	DCTN1	chr2	74618921	-	WDR54	chr2	74649997	+
5UTR-3CDS	ENST00000318948	ENST00000314485		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
5UTR-3CDS	ENST00000318948	ENST00000368086		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
5UTR-intron	ENST00000318948	ENST00000460351		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
intron-3CDS	ENST00000400199	ENST00000314485		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
intron-3CDS	ENST00000400199	ENST00000368086		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
intron-intron	ENST00000400199	ENST00000460351		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
5UTR-3CDS	ENST00000400202	ENST00000314485		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
5UTR-3CDS	ENST00000400202	ENST00000368086		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
5UTR-intron	ENST00000400202	ENST00000460351		TCGA	RV	MESO	TCGA-TS-A7OZ-01A	NRIP1	chr21	16386665	-	IGSF8	chr1	160062485	-
In-frame	ENST00000460680	ENST00000450454		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52440269	-	TCEA3	chr1	23745632	-
In-frame	ENST00000460680	ENST00000374601		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52440269	-	TCEA3	chr1	23745632	-
5CDS-5UTR	ENST00000460680	ENST00000461794		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52440269	-	TCEA3	chr1	23745632	-
In-frame	ENST00000296288	ENST00000450454		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52440269	-	TCEA3	chr1	23745632	-
In-frame	ENST00000296288	ENST00000374601		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52440269	-	TCEA3	chr1	23745632	-
5CDS-5UTR	ENST00000296288	ENST00000461794		TCGA	RV	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52440269	-	TCEA3	chr1	23745632	-
Frame-shit	ENST00000588427	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588427	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588427	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000588427	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000436106	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000436106	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000436106	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000436106	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588871	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588871	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588871	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000588871	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
intron-3CDS	ENST00000427685	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
intron-3CDS	ENST00000427685	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
intron-3CDS	ENST00000427685	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
intron-5UTR	ENST00000427685	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588849	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588849	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000588849	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000588849	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000586564	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000586564	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000586564	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000586564	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000592872	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000592872	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
Frame-shit	ENST00000592872	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000592872	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
In-frame	ENST00000585675	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
In-frame	ENST00000585675	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
In-frame	ENST00000585675	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5CDS-5UTR	ENST00000585675	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5UTR-3CDS	ENST00000591027	ENST00000244137		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5UTR-3CDS	ENST00000591027	ENST00000397032		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5UTR-3CDS	ENST00000591027	ENST00000436370		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5UTR-5UTR	ENST00000591027	ENST00000591968		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	C19orf25	chr19	1478773	-	PEPD	chr19	33882385	-
5UTR-3CDS	ENST00000349945	ENST00000308159		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3CDS	ENST00000349945	ENST00000569842		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-5UTR	ENST00000349945	ENST00000564887		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3UTR	ENST00000349945	ENST00000569595		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-5UTR	ENST00000349945	ENST00000542526		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
Frame-shit	ENST00000432919	ENST00000308159		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
Frame-shit	ENST00000432919	ENST00000569842		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-5UTR	ENST00000432919	ENST00000564887		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-3UTR	ENST00000432919	ENST00000569595		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-5UTR	ENST00000432919	ENST00000542526		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
Frame-shit	ENST00000354436	ENST00000308159		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
Frame-shit	ENST00000354436	ENST00000569842		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-5UTR	ENST00000354436	ENST00000564887		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-3UTR	ENST00000354436	ENST00000569595		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-5UTR	ENST00000354436	ENST00000542526		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
Frame-shit	ENST00000567239	ENST00000308159		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
Frame-shit	ENST00000567239	ENST00000569842		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-5UTR	ENST00000567239	ENST00000564887		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-3UTR	ENST00000567239	ENST00000569595		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5CDS-5UTR	ENST00000567239	ENST00000542526		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3CDS	ENST00000393742	ENST00000308159		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3CDS	ENST00000393742	ENST00000569842		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-5UTR	ENST00000393742	ENST00000564887		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3UTR	ENST00000393742	ENST00000569595		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-5UTR	ENST00000393742	ENST00000542526		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3CDS	ENST00000566899	ENST00000308159		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3CDS	ENST00000566899	ENST00000569842		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-5UTR	ENST00000566899	ENST00000564887		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-3UTR	ENST00000566899	ENST00000569595		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
5UTR-5UTR	ENST00000566899	ENST00000542526		TCGA	RV	MESO	TCGA-YS-AA4M-01A	NFAT5	chr16	69600277	+	NUP93	chr16	56832388	+
intron-3CDS	ENST00000560302	ENST00000299957		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000560302	ENST00000360824		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000560302	ENST00000345795		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000560302	ENST00000429162		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
Frame-shit	ENST00000394518	ENST00000299957		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
5CDS-intron	ENST00000394518	ENST00000360824		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
5CDS-intron	ENST00000394518	ENST00000345795		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
5CDS-intron	ENST00000394518	ENST00000429162		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
Frame-shit	ENST00000361243	ENST00000299957		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
5CDS-intron	ENST00000361243	ENST00000360824		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
5CDS-intron	ENST00000361243	ENST00000345795		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
5CDS-intron	ENST00000361243	ENST00000429162		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-3CDS	ENST00000560579	ENST00000299957		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000560579	ENST00000360824		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000560579	ENST00000345795		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000560579	ENST00000429162		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-3CDS	ENST00000394510	ENST00000299957		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000394510	ENST00000360824		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000394510	ENST00000345795		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
intron-intron	ENST00000394510	ENST00000429162		TCGA	RV	MESO	TCGA-LK-A4NY-01A	AKAP13	chr15	86129054	+	CASC4	chr15	44624186	+
In-frame	ENST00000287878	ENST00000223023		TCGA	RV	MESO	TCGA-UT-A88C-01B	PRKAG2	chr7	151292431	-	WASL	chr7	123349277	-
In-frame	ENST00000418337	ENST00000223023		TCGA	RV	MESO	TCGA-UT-A88C-01B	PRKAG2	chr7	151292431	-	WASL	chr7	123349277	-
In-frame	ENST00000433631	ENST00000223023		TCGA	RV	MESO	TCGA-UT-A88C-01B	PRKAG2	chr7	151292431	-	WASL	chr7	123349277	-
In-frame	ENST00000492843	ENST00000223023		TCGA	RV	MESO	TCGA-UT-A88C-01B	PRKAG2	chr7	151292431	-	WASL	chr7	123349277	-
Frame-shit	ENST00000392801	ENST00000223023		TCGA	RV	MESO	TCGA-UT-A88C-01B	PRKAG2	chr7	151292431	-	WASL	chr7	123349277	-
intron-3CDS	ENST00000461529	ENST00000223023		TCGA	RV	MESO	TCGA-UT-A88C-01B	PRKAG2	chr7	151292431	-	WASL	chr7	123349277	-
In-frame	ENST00000316052	ENST00000436750		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
In-frame	ENST00000316052	ENST00000455213		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000316052	ENST00000403422		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000316052	ENST00000528323		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000316052	ENST00000284503		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
In-frame	ENST00000525936	ENST00000436750		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
In-frame	ENST00000525936	ENST00000455213		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-5UTR	ENST00000525936	ENST00000403422		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000525936	ENST00000528323		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000525936	ENST00000284503		TCGA	RV	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133802	+	NEIL2	chr8	11637107	+
5CDS-intron	ENST00000338380	ENST00000484427		TCGA	RV	MESO	TCGA-SC-AA5Z-01A	SLPI	chr20	43880880	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000338380	ENST00000371764		TCGA	RV	MESO	TCGA-SC-AA5Z-01A	SLPI	chr20	43880880	-	DDX27	chr20	47849303	+
In-frame	ENST00000373344	ENST00000253401		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000373344	ENST00000374878		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000373344	ENST00000374870		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000373344	ENST00000437457		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5CDS-5UTR	ENST00000373344	ENST00000495564		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5CDS-5UTR	ENST00000373344	ENST00000374872		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5CDS-5UTR	ENST00000373344	ENST00000433323		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000395603	ENST00000253401		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000395603	ENST00000374878		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000395603	ENST00000374870		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
In-frame	ENST00000395603	ENST00000437457		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5CDS-5UTR	ENST00000395603	ENST00000495564		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5CDS-5UTR	ENST00000395603	ENST00000374872		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5CDS-5UTR	ENST00000395603	ENST00000433323		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-3CDS	ENST00000480283	ENST00000253401		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-3CDS	ENST00000480283	ENST00000374878		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-3CDS	ENST00000480283	ENST00000374870		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-3CDS	ENST00000480283	ENST00000437457		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-5UTR	ENST00000480283	ENST00000495564		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-5UTR	ENST00000480283	ENST00000374872		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
5UTR-5UTR	ENST00000480283	ENST00000433323		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-3CDS	ENST00000373341	ENST00000253401		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-3CDS	ENST00000373341	ENST00000374878		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-3CDS	ENST00000373341	ENST00000374870		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-3CDS	ENST00000373341	ENST00000437457		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-5UTR	ENST00000373341	ENST00000495564		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-5UTR	ENST00000373341	ENST00000374872		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-5UTR	ENST00000373341	ENST00000433323		TCGA	RV	MESO	TCGA-MQ-A4LP-01A	ATRX	chrX	77041468	-	ARHGEF9	chrX	62875617	-
intron-5UTR	ENST00000449934	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449934	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449934	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449934	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000449934	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000449934	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000417899	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000417899	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000417899	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000417899	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000417899	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000417899	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000497496	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000497496	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000497496	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000497496	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000497496	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000497496	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000427477	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000427477	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000427477	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000427477	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000427477	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000427477	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446505	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446505	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446505	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446505	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000446505	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000446505	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547767	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547767	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547767	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547767	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547767	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547767	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400322	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400322	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400322	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400322	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400322	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400322	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000493320	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000493320	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000493320	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000493320	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000493320	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000493320	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400325	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400325	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400325	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400325	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000400325	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000400325	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547609	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547609	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547609	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547609	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000547609	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000547609	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000420259	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000420259	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000420259	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000420259	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000420259	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000420259	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468858	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468858	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468858	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468858	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000468858	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000468858	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000418465	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000418465	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000418465	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000418465	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000418465	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000418465	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432479	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432479	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432479	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432479	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000432479	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000432479	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552236	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552236	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552236	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552236	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000552236	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000552236	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438928	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438928	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438928	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438928	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000438928	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000438928	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000486844	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000486844	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000486844	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000486844	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000486844	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000486844	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415525	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415525	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415525	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415525	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000415525	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000415525	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414473	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414473	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414473	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414473	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000414473	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000414473	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546529	ENST00000491161		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546529	ENST00000376073		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546529	ENST00000340027		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546529	ENST00000376072		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000546529	ENST00000376071		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000497117		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000420556		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000432392		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000457547		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000419728		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000498490		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000433654		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000447248		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000418936		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000420485		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000491762		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000439584		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000415123		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000436623		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000455448		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000459657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000455825		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000435674		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000412603		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000438663		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000495500		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000383478		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000383477		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000383476		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000400241		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000494590		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000430599		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000446756		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000441372		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000453657		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000489751		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000437517		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000436253		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000452296		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000546529	ENST00000419086		TCGA	RV	MESO	TCGA-XT-AASU-01A	MICA	chr6	31368540	+	NCR3	chr6	31557676	-
Frame-shit	ENST00000343289	ENST00000372105		TCGA	RV	MESO	TCGA-ZN-A9VQ-01A	NT5C2	chr10	104899163	-	LRIT1	chr10	85994134	-
In-frame	ENST00000404739	ENST00000372105		TCGA	RV	MESO	TCGA-ZN-A9VQ-01A	NT5C2	chr10	104899163	-	LRIT1	chr10	85994134	-
5UTR-3CDS	ENST00000369857	ENST00000372105		TCGA	RV	MESO	TCGA-ZN-A9VQ-01A	NT5C2	chr10	104899163	-	LRIT1	chr10	85994134	-
In-frame	ENST00000423468	ENST00000372105		TCGA	RV	MESO	TCGA-ZN-A9VQ-01A	NT5C2	chr10	104899163	-	LRIT1	chr10	85994134	-
intron-3CDS	ENST00000470299	ENST00000372105		TCGA	RV	MESO	TCGA-ZN-A9VQ-01A	NT5C2	chr10	104899163	-	LRIT1	chr10	85994134	-
In-frame	ENST00000265077	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000265077	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000265077	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
5CDS-intron	ENST00000265077	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000342785	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000342785	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000342785	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
5CDS-intron	ENST00000342785	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000343200	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000343200	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000343200	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
5CDS-intron	ENST00000343200	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000512590	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000512590	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000512590	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
5CDS-intron	ENST00000512590	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000502527	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000502527	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
In-frame	ENST00000502527	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
5CDS-intron	ENST00000502527	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
3UTR-3CDS	ENST00000513016	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
3UTR-3CDS	ENST00000513016	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
3UTR-3CDS	ENST00000513016	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
3UTR-intron	ENST00000513016	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
intron-3CDS	ENST00000513984	ENST00000335625		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
intron-3CDS	ENST00000513984	ENST00000355395		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
intron-3CDS	ENST00000513984	ENST00000400081		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
intron-intron	ENST00000513984	ENST00000557449		TCGA	RV	MESO	TCGA-3H-AB3M-01A	VCAN	chr5	82849341	+	GABRA5	chr15	27188362	+
Frame-shit	ENST00000531154	ENST00000393158		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
Frame-shit	ENST00000531154	ENST00000302251		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
Frame-shit	ENST00000398006	ENST00000393158		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
Frame-shit	ENST00000398006	ENST00000302251		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
5UTR-3CDS	ENST00000527228	ENST00000393158		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
5UTR-3CDS	ENST00000527228	ENST00000302251		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
3UTR-3CDS	ENST00000524880	ENST00000393158		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
3UTR-3CDS	ENST00000524880	ENST00000302251		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000527377	ENST00000393158		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000527377	ENST00000302251		TCGA	RV	MESO	TCGA-UT-A88E-01B	ALG9	chr11	111706888	-	PDGFD	chr11	103818452	-
5CDS-3UTR	ENST00000377707	ENST00000361570		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000304494		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000579755		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000579122		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000578845		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000530628		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000498124		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000498628		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377707	ENST00000494262		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377707	ENST00000446177		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377707	ENST00000479692		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377707	ENST00000497750		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377707	ENST00000470819		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000361570		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000304494		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000579755		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000579122		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000578845		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000530628		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000498124		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000498628		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000377700	ENST00000494262		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377700	ENST00000446177		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377700	ENST00000479692		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377700	ENST00000497750		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000377700	ENST00000470819		TCGA	RV	MESO	TCGA-TS-A7P1-01A	SHB	chr9	38067926	-	CDKN2A	chr9	21968241	-
5CDS-5UTR	ENST00000344337	ENST00000288986		TCGA	RV	MESO	TCGA-XT-AASU-01A	KPNA1	chr3	122215284	-	NCK1	chr3	136646826	+
5CDS-5UTR	ENST00000344337	ENST00000481752		TCGA	RV	MESO	TCGA-XT-AASU-01A	KPNA1	chr3	122215284	-	NCK1	chr3	136646826	+
5CDS-intron	ENST00000344337	ENST00000469404		TCGA	RV	MESO	TCGA-XT-AASU-01A	KPNA1	chr3	122215284	-	NCK1	chr3	136646826	+
intron-5UTR	ENST00000466923	ENST00000288986		TCGA	RV	MESO	TCGA-XT-AASU-01A	KPNA1	chr3	122215284	-	NCK1	chr3	136646826	+
intron-5UTR	ENST00000466923	ENST00000481752		TCGA	RV	MESO	TCGA-XT-AASU-01A	KPNA1	chr3	122215284	-	NCK1	chr3	136646826	+
intron-intron	ENST00000466923	ENST00000469404		TCGA	RV	MESO	TCGA-XT-AASU-01A	KPNA1	chr3	122215284	-	NCK1	chr3	136646826	+
Frame-shit	ENST00000542285	ENST00000361866		TCGA	RV	MESO	TCGA-UT-A88E-01B	C1R	chr12	7241206	-	COL6A1	chr21	47412277	+
5CDS-intron	ENST00000542285	ENST00000498614		TCGA	RV	MESO	TCGA-UT-A88E-01B	C1R	chr12	7241206	-	COL6A1	chr21	47412277	+
intron-3CDS	ENST00000602298	ENST00000361866		TCGA	RV	MESO	TCGA-UT-A88E-01B	C1R	chr12	7241206	-	COL6A1	chr21	47412277	+
intron-intron	ENST00000602298	ENST00000498614		TCGA	RV	MESO	TCGA-UT-A88E-01B	C1R	chr12	7241206	-	COL6A1	chr21	47412277	+
5CDS-5UTR	ENST00000233154	ENST00000308159		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000233154	ENST00000569842		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000233154	ENST00000564887		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000233154	ENST00000569595		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000233154	ENST00000542526		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000451463	ENST00000308159		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000451463	ENST00000569842		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000451463	ENST00000564887		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000451463	ENST00000569595		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000451463	ENST00000542526		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000522586	ENST00000308159		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000522586	ENST00000569842		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000522586	ENST00000564887		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000522586	ENST00000569595		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000522586	ENST00000542526		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000393349	ENST00000308159		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000393349	ENST00000569842		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000393349	ENST00000564887		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000393349	ENST00000569595		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-intron	ENST00000393349	ENST00000542526		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	NCK2	chr2	106471745	+	NUP93	chr16	56782146	+
5CDS-5UTR	ENST00000409792	ENST00000334325		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	SETD2	chr3	47155366	-	SPATA12	chr3	57107394	+
intron-5UTR	ENST00000492397	ENST00000334325		TCGA	RV	MESO	TCGA-ZN-A9VW-01A	SETD2	chr3	47155366	-	SPATA12	chr3	57107394	+
Frame-shit	ENST00000336199	ENST00000366582		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000336199	ENST00000366581		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000336199	ENST00000483073		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000336199	ENST00000366579		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000366540	ENST00000366582		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000366540	ENST00000366581		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000366540	ENST00000483073		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000366540	ENST00000366579		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000366539	ENST00000366582		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000366539	ENST00000366581		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000366539	ENST00000483073		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000366539	ENST00000366579		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000263826	ENST00000366582		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
Frame-shit	ENST00000263826	ENST00000366581		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000263826	ENST00000483073		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-intron	ENST00000263826	ENST00000366579		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
intron-3CDS	ENST00000492957	ENST00000366582		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
intron-3CDS	ENST00000492957	ENST00000366581		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
intron-intron	ENST00000492957	ENST00000483073		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
intron-intron	ENST00000492957	ENST00000366579		TCGA	RV	MESO	TCGA-UT-A88E-01B	AKT3	chr1	243800913	-	HEATR1	chr1	236714290	-
5CDS-3UTR	ENST00000580900	ENST00000361570		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000304494		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000579755		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000579122		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000578845		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000530628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000498124		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000498628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000580900	ENST00000494262		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000580900	ENST00000446177		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000580900	ENST00000479692		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000580900	ENST00000497750		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000580900	ENST00000470819		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000361570		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000304494		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000579755		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000579122		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000578845		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000530628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000498124		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000498628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000380172	ENST00000494262		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000380172	ENST00000446177		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000380172	ENST00000479692		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000380172	ENST00000497750		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000380172	ENST00000470819		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000361570		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000304494		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000579755		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000579122		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000578845		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000530628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000498124		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000498628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-3UTR	ENST00000460874	ENST00000494262		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000460874	ENST00000446177		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000460874	ENST00000479692		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000460874	ENST00000497750		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
5CDS-intron	ENST00000460874	ENST00000470819		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000361570		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000304494		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000579755		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000579122		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000578845		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000530628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000498124		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000498628		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3UTR	ENST00000427788	ENST00000494262		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-intron	ENST00000427788	ENST00000446177		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-intron	ENST00000427788	ENST00000479692		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-intron	ENST00000427788	ENST00000497750		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-intron	ENST00000427788	ENST00000470819		TCGA	RV	MESO	TCGA-3H-AB3M-01A	MTAP	chr9	21815518	+	CDKN2A	chr9	21968241	-
3UTR-3CDS	ENST00000331595	ENST00000602725		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
3UTR-3CDS	ENST00000331595	ENST00000344035		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
3UTR-3CDS	ENST00000331595	ENST00000356536		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
3UTR-3CDS	ENST00000331595	ENST00000457805		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
3UTR-3UTR	ENST00000331595	ENST00000470404		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
3UTR-intron	ENST00000331595	ENST00000526960		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
Frame-shit	ENST00000480756	ENST00000602725		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
Frame-shit	ENST00000480756	ENST00000344035		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
Frame-shit	ENST00000480756	ENST00000356536		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
In-frame	ENST00000480756	ENST00000457805		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
5CDS-3UTR	ENST00000480756	ENST00000470404		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
5CDS-intron	ENST00000480756	ENST00000526960		TCGA	RV	MESO	TCGA-LK-A4NY-01A	BGN	chrX	152775004	+	PTP4A2	chr1	32374561	-
In-frame	ENST00000396373	ENST00000320477		TCGA	RV	MESO	TCGA-SC-A6LN-01A	ETV6	chr12	11803094	+	CIDEA	chr18	12274092	+
5CDS-3UTR	ENST00000396373	ENST00000521296		TCGA	RV	MESO	TCGA-SC-A6LN-01A	ETV6	chr12	11803094	+	CIDEA	chr18	12274092	+
3UTR-3CDS	ENST00000544715	ENST00000320477		TCGA	RV	MESO	TCGA-SC-A6LN-01A	ETV6	chr12	11803094	+	CIDEA	chr18	12274092	+
3UTR-3UTR	ENST00000544715	ENST00000521296		TCGA	RV	MESO	TCGA-SC-A6LN-01A	ETV6	chr12	11803094	+	CIDEA	chr18	12274092	+
Frame-shit	ENST00000460680	ENST00000301336		TCGA	RV	MESO	TCGA-SH-A7BD-01A	BAP1	chr3	52443570	-	RILP	chr17	1551789	-
Frame-shit	ENST00000296288	ENST00000301336		TCGA	RV	MESO	TCGA-SH-A7BD-01A	BAP1	chr3	52443570	-	RILP	chr17	1551789	-
Frame-shit	ENST00000356195	ENST00000370357		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	CDCA7L	chr7	21956372	-	PASD1	chrX	150828185	+
In-frame	ENST00000406877	ENST00000370357		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	CDCA7L	chr7	21956372	-	PASD1	chrX	150828185	+
In-frame	ENST00000373934	ENST00000370357		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	CDCA7L	chr7	21956372	-	PASD1	chrX	150828185	+
5UTR-3CDS	ENST00000465490	ENST00000370357		TCGA	RV	MESO	TCGA-ZN-A9VP-01A	CDCA7L	chr7	21956372	-	PASD1	chrX	150828185	+
Frame-shit	ENST00000324096	ENST00000221418		TCGA	RV	MESO	TCGA-TS-A8AI-01A	MAP1S	chr19	17835998	+	ECH1	chr19	39306647	-
5CDS-intron	ENST00000324096	ENST00000597805		TCGA	RV	MESO	TCGA-TS-A8AI-01A	MAP1S	chr19	17835998	+	ECH1	chr19	39306647	-
intron-3CDS	ENST00000597681	ENST00000221418		TCGA	RV	MESO	TCGA-TS-A8AI-01A	MAP1S	chr19	17835998	+	ECH1	chr19	39306647	-
intron-intron	ENST00000597681	ENST00000597805		TCGA	RV	MESO	TCGA-TS-A8AI-01A	MAP1S	chr19	17835998	+	ECH1	chr19	39306647	-
Frame-shit	ENST00000544059	ENST00000221418		TCGA	RV	MESO	TCGA-TS-A8AI-01A	MAP1S	chr19	17835998	+	ECH1	chr19	39306647	-
5CDS-intron	ENST00000544059	ENST00000597805		TCGA	RV	MESO	TCGA-TS-A8AI-01A	MAP1S	chr19	17835998	+	ECH1	chr19	39306647	-
In-frame	ENST00000592173	ENST00000379068		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000592173	ENST00000379059		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
5CDS-intron	ENST00000592173	ENST00000493342		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000334598	ENST00000379068		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000334598	ENST00000379059		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
5CDS-intron	ENST00000334598	ENST00000493342		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000590757	ENST00000379068		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000590757	ENST00000379059		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
5CDS-intron	ENST00000590757	ENST00000493342		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000441607	ENST00000379068		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
In-frame	ENST00000441607	ENST00000379059		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
5CDS-intron	ENST00000441607	ENST00000493342		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
intron-3CDS	ENST00000586489	ENST00000379068		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
intron-3CDS	ENST00000586489	ENST00000379059		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
intron-intron	ENST00000586489	ENST00000493342		TCGA	LD	MESO	TCGA-3H-AB3L-01A	INO80C	chr18	33077683	-	POLA1	chrX	24906123	+
5UTR-3CDS	ENST00000563128	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
5UTR-3CDS	ENST00000563128	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
In-frame	ENST00000300215	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
In-frame	ENST00000300215	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
In-frame	ENST00000540029	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
In-frame	ENST00000540029	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
In-frame	ENST00000441366	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
In-frame	ENST00000441366	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	EPB42	chr15	43495313	-	RPUSD2	chr15	40863803	+
5CDS-5UTR	ENST00000221214	ENST00000563128		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000221214	ENST00000300215		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000221214	ENST00000540029		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000221214	ENST00000441366		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000457542	ENST00000563128		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000457542	ENST00000300215		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000457542	ENST00000540029		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000457542	ENST00000441366		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5UTR-5UTR	ENST00000260357	ENST00000563128		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5UTR-5UTR	ENST00000260357	ENST00000300215		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5UTR-5UTR	ENST00000260357	ENST00000540029		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5UTR-5UTR	ENST00000260357	ENST00000441366		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000456763	ENST00000563128		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000456763	ENST00000300215		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000456763	ENST00000540029		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000456763	ENST00000441366		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000514566	ENST00000563128		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000514566	ENST00000300215		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000514566	ENST00000540029		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
5CDS-5UTR	ENST00000514566	ENST00000441366		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
3UTR-5UTR	ENST00000507762	ENST00000563128		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
3UTR-5UTR	ENST00000507762	ENST00000300215		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
3UTR-5UTR	ENST00000507762	ENST00000540029		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
3UTR-5UTR	ENST00000507762	ENST00000441366		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	EPB42	chr15	43495473	-
In-frame	ENST00000221214	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000221214	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000457542	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000457542	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
5UTR-3CDS	ENST00000260357	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
5UTR-3CDS	ENST00000260357	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000456763	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000456763	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000514566	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
In-frame	ENST00000514566	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
3UTR-3CDS	ENST00000507762	ENST00000315616		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
3UTR-3CDS	ENST00000507762	ENST00000559271		TCGA	LD	MESO	TCGA-3H-AB3M-01A	MAPKBP1	chr15	42067587	+	RPUSD2	chr15	40863803	+
Frame-shit	ENST00000230640	ENST00000368439		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
Frame-shit	ENST00000230640	ENST00000368436		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
Frame-shit	ENST00000230640	ENST00000308987		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
5CDS-3UTR	ENST00000230640	ENST00000471245		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
5CDS-intron	ENST00000230640	ENST00000600888		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
Frame-shit	ENST00000545714	ENST00000368439		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
Frame-shit	ENST00000545714	ENST00000368436		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
Frame-shit	ENST00000545714	ENST00000308987		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
5CDS-3UTR	ENST00000545714	ENST00000471245		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
5CDS-intron	ENST00000545714	ENST00000600888		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000504388	ENST00000368439		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000504388	ENST00000368436		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
intron-3CDS	ENST00000504388	ENST00000308987		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
intron-3UTR	ENST00000504388	ENST00000471245		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
intron-intron	ENST00000504388	ENST00000600888		TCGA	LD	MESO	TCGA-3H-AB3M-01A	SKIV2L2	chr5	54636012	+	CKS1B	chr1	154950463	+
Frame-shit	ENST00000349830	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-5UTR	ENST00000349830	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000349830	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000349830	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
Frame-shit	ENST00000520359	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-5UTR	ENST00000520359	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000520359	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000520359	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
Frame-shit	ENST00000398560	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-5UTR	ENST00000398560	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000398560	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000398560	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
Frame-shit	ENST00000518288	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-5UTR	ENST00000518288	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000518288	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000518288	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
Frame-shit	ENST00000398564	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-5UTR	ENST00000398564	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000398564	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000398564	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
Frame-shit	ENST00000262112	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-5UTR	ENST00000262112	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000262112	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000262112	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
intron-3CDS	ENST00000521927	ENST00000397944		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
intron-5UTR	ENST00000521927	ENST00000367493		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
intron-intron	ENST00000521927	ENST00000523560		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
intron-intron	ENST00000521927	ENST00000367488		TCGA	LD	MESO	TCGA-3H-AB3S-01A	ARHGEF10	chr8	1791602	+	ADGB	chr6	147022077	+
5CDS-intron	ENST00000309993	ENST00000264674		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000392736		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000464456		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000472280		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000494292		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000468789		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000460814		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-intron	ENST00000309993	ENST00000433243		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-5UTR	ENST00000309993	ENST00000485957		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000264674		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000392736		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000464456		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000472280		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000494292		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000468789		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000460814		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-intron	ENST00000434835	ENST00000433243		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
intron-5UTR	ENST00000434835	ENST00000485957		TCGA	LD	MESO	TCGA-3H-AB3U-01A	MSL2	chr3	135913814	-	MECOM	chr3	168867543	-
5CDS-3UTR	ENST00000343815	ENST00000355197		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000343815	ENST00000324978		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000343815	ENST00000484864		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000428931	ENST00000355197		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000428931	ENST00000324978		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000428931	ENST00000484864		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000271877	ENST00000355197		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000271877	ENST00000324978		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000271877	ENST00000484864		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000361546	ENST00000355197		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000361546	ENST00000324978		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5CDS-3UTR	ENST00000361546	ENST00000484864		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
intron-3UTR	ENST00000484819	ENST00000355197		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
intron-3UTR	ENST00000484819	ENST00000324978		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
intron-3UTR	ENST00000484819	ENST00000484864		TCGA	LD	MESO	TCGA-3U-A98D-01A	UBAP2L	chr1	154201201	+	AQP10	chr1	154295458	+
5UTR-5UTR	ENST00000295569	ENST00000261037		TCGA	LD	MESO	TCGA-3U-A98F-01A	FAM19A4	chr3	68981391	-	COL8A1	chr3	99463741	+
5UTR-5UTR	ENST00000295569	ENST00000273342		TCGA	LD	MESO	TCGA-3U-A98F-01A	FAM19A4	chr3	68981391	-	COL8A1	chr3	99463741	+
5UTR-intron	ENST00000295569	ENST00000463753		TCGA	LD	MESO	TCGA-3U-A98F-01A	FAM19A4	chr3	68981391	-	COL8A1	chr3	99463741	+
5CDS-intron	ENST00000264741	ENST00000537618		TCGA	LD	MESO	TCGA-3U-A98H-01A	ITGA9	chr3	37774289	+	NDUFA8	chr9	124906657	-
5CDS-intron	ENST00000264741	ENST00000373768		TCGA	LD	MESO	TCGA-3U-A98H-01A	ITGA9	chr3	37774289	+	NDUFA8	chr9	124906657	-
intron-intron	ENST00000422441	ENST00000537618		TCGA	LD	MESO	TCGA-3U-A98H-01A	ITGA9	chr3	37774289	+	NDUFA8	chr9	124906657	-
intron-intron	ENST00000422441	ENST00000373768		TCGA	LD	MESO	TCGA-3U-A98H-01A	ITGA9	chr3	37774289	+	NDUFA8	chr9	124906657	-
intron-3CDS	ENST00000561603	ENST00000390239		TCGA	LD	MESO	TCGA-3U-A98H-01A	RPAP1	chr15	41815105	-	IGKJ4	chr2	89160432	-
intron-3CDS	ENST00000304330	ENST00000390239		TCGA	LD	MESO	TCGA-3U-A98H-01A	RPAP1	chr15	41815105	-	IGKJ4	chr2	89160432	-
intron-3CDS	ENST00000568413	ENST00000390239		TCGA	LD	MESO	TCGA-3U-A98H-01A	RPAP1	chr15	41815105	-	IGKJ4	chr2	89160432	-
Frame-shit	ENST00000356860	ENST00000222390		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356860	ENST00000457544		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356860	ENST00000444829		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356860	ENST00000453411		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356860	ENST00000423064		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356860	ENST00000354224		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
5CDS-5UTR	ENST00000356860	ENST00000453018		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356253	ENST00000222390		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356253	ENST00000457544		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356253	ENST00000444829		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356253	ENST00000453411		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356253	ENST00000423064		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000356253	ENST00000354224		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
5CDS-5UTR	ENST00000356253	ENST00000453018		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000423588	ENST00000222390		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000423588	ENST00000457544		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000423588	ENST00000444829		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000423588	ENST00000453411		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000423588	ENST00000423064		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000423588	ENST00000354224		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-5UTR	ENST00000423588	ENST00000453018		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000464354	ENST00000222390		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000464354	ENST00000457544		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000464354	ENST00000444829		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000464354	ENST00000453411		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000464354	ENST00000423064		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000464354	ENST00000354224		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-5UTR	ENST00000464354	ENST00000453018		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000535308	ENST00000222390		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000535308	ENST00000457544		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000535308	ENST00000444829		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000535308	ENST00000453411		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000535308	ENST00000423064		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-3CDS	ENST00000535308	ENST00000354224		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
intron-5UTR	ENST00000535308	ENST00000453018		TCGA	LD	MESO	TCGA-3U-A98I-01A	CACNA2D1	chr7	81634739	-	HGF	chr7	81388120	-
Frame-shit	ENST00000345365	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000345365	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000345365	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
In-frame	ENST00000394589	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
In-frame	ENST00000394589	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000394589	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000360276	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000360276	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000360276	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000335858	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000335858	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000335858	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000590016	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000590016	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000590016	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000460118	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000460118	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000460118	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5UTR-3CDS	ENST00000590380	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5UTR-3CDS	ENST00000590380	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
5UTR-3UTR	ENST00000590380	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
intron-3CDS	ENST00000357906	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
intron-3CDS	ENST00000357906	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
intron-3UTR	ENST00000357906	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51D	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000593039	ENST00000353533		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51L3-RFFL	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000593039	ENST00000415385		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51L3-RFFL	chr17	33428220	-	MAP2K4	chr17	11984673	+
5CDS-3UTR	ENST00000593039	ENST00000581941		TCGA	LD	MESO	TCGA-3U-A98I-01A	RAD51L3-RFFL	chr17	33428220	-	MAP2K4	chr17	11984673	+
Frame-shit	ENST00000351304	ENST00000461719		TCGA	LD	MESO	TCGA-LK-A4NY-01A	CEL	chr9	135946998	+	IGHJ4	chr14	106330460	-
Frame-shit	ENST00000372080	ENST00000461719		TCGA	LD	MESO	TCGA-LK-A4NY-01A	CEL	chr9	135946998	+	IGHJ4	chr14	106330460	-
Frame-shit	ENST00000518659	ENST00000424082		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000518659	ENST00000259351		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000518659	ENST00000394022		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000518659	ENST00000373436		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000518659	ENST00000373434		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000518659	ENST00000394011		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000518659	ENST00000480993		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
Frame-shit	ENST00000545108	ENST00000424082		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000545108	ENST00000259351		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000545108	ENST00000394022		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000545108	ENST00000373436		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000545108	ENST00000373434		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000545108	ENST00000394011		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000545108	ENST00000480993		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-3CDS	ENST00000520393	ENST00000424082		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-intron	ENST00000520393	ENST00000259351		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-intron	ENST00000520393	ENST00000394022		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-intron	ENST00000520393	ENST00000373436		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-intron	ENST00000520393	ENST00000373434		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-intron	ENST00000520393	ENST00000394011		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
intron-intron	ENST00000520393	ENST00000480993		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
Frame-shit	ENST00000519204	ENST00000424082		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000519204	ENST00000259351		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000519204	ENST00000394022		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000519204	ENST00000373436		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000519204	ENST00000373434		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000519204	ENST00000394011		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000519204	ENST00000480993		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
Frame-shit	ENST00000520394	ENST00000424082		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000520394	ENST00000259351		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000520394	ENST00000394022		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000520394	ENST00000373436		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000520394	ENST00000373434		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000520394	ENST00000394011		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000520394	ENST00000480993		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
Frame-shit	ENST00000403607	ENST00000424082		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000403607	ENST00000259351		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000403607	ENST00000394022		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000403607	ENST00000373436		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000403607	ENST00000373434		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000403607	ENST00000394011		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
5CDS-intron	ENST00000403607	ENST00000480993		TCGA	LD	MESO	TCGA-LK-A4NY-01A	TENM2	chr5	167420187	+	RALGPS1	chr9	129972974	+
In-frame	ENST00000458031	ENST00000460680		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000458031	ENST00000296288		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000494103	ENST00000460680		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000494103	ENST00000296288		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000476854	ENST00000460680		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000476854	ENST00000296288		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000476351	ENST00000460680		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000476351	ENST00000296288		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000404366	ENST00000460680		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000404366	ENST00000296288		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
intron-3CDS	ENST00000468068	ENST00000460680		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
intron-3CDS	ENST00000468068	ENST00000296288		TCGA	LD	MESO	TCGA-LK-A4O5-01A	ACY1	chr3	52021640	+	BAP1	chr3	52441476	-
In-frame	ENST00000433700	ENST00000377560		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000433700	ENST00000430131		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000433700	ENST00000550722		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
5CDS-intron	ENST00000433700	ENST00000549141		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000443698	ENST00000377560		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000443698	ENST00000430131		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000443698	ENST00000550722		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
5CDS-intron	ENST00000443698	ENST00000549141		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000380062	ENST00000377560		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000380062	ENST00000430131		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000380062	ENST00000550722		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
5CDS-intron	ENST00000380062	ENST00000549141		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000429045	ENST00000377560		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000429045	ENST00000430131		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
In-frame	ENST00000429045	ENST00000550722		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
5CDS-intron	ENST00000429045	ENST00000549141		TCGA	LD	MESO	TCGA-LK-A4O5-01A	IFT74	chr9	26962085	+	HECTD4	chr12	112621070	-
intron-3CDS	ENST00000356218	ENST00000553432		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000356218	ENST00000557376		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3UTR	ENST00000356218	ENST00000553299		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000356218	ENST00000335281		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000356218	ENST00000555472		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000356218	ENST00000556766		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000356218	ENST00000554736		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000356218	ENST00000556752		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000356218	ENST00000554875		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000557103	ENST00000553432		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000557103	ENST00000557376		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3UTR	ENST00000557103	ENST00000553299		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000557103	ENST00000335281		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000557103	ENST00000555472		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000557103	ENST00000556766		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000557103	ENST00000554736		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000557103	ENST00000556752		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000557103	ENST00000554875		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-3CDS	ENST00000395718	ENST00000553432		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-3CDS	ENST00000395718	ENST00000557376		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-3UTR	ENST00000395718	ENST00000553299		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000395718	ENST00000335281		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000395718	ENST00000555472		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000395718	ENST00000556766		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000395718	ENST00000554736		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000395718	ENST00000556752		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000395718	ENST00000554875		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-3CDS	ENST00000344768	ENST00000553432		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-3CDS	ENST00000344768	ENST00000557376		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-3UTR	ENST00000344768	ENST00000553299		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000344768	ENST00000335281		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000344768	ENST00000555472		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000344768	ENST00000556766		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000344768	ENST00000554736		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000344768	ENST00000556752		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5UTR-5UTR	ENST00000344768	ENST00000554875		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000554167	ENST00000553432		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000554167	ENST00000557376		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3UTR	ENST00000554167	ENST00000553299		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000554167	ENST00000335281		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000554167	ENST00000555472		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000554167	ENST00000556766		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000554167	ENST00000554736		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000554167	ENST00000556752		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000554167	ENST00000554875		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000553556	ENST00000553432		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3CDS	ENST00000553556	ENST00000557376		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-3UTR	ENST00000553556	ENST00000553299		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000553556	ENST00000335281		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000553556	ENST00000555472		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000553556	ENST00000556766		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000553556	ENST00000554736		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000553556	ENST00000556752		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
intron-5UTR	ENST00000553556	ENST00000554875		TCGA	LD	MESO	TCGA-LK-A4O7-01A	FRMD6	chr14	52118714	+	GNG2	chr14	52417368	+
5CDS-5UTR	ENST00000309731	ENST00000542035		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000309731	ENST00000544411		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000309731	ENST00000340912		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
5CDS-5UTR	ENST00000309731	ENST00000544171		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
intron-5UTR	ENST00000564184	ENST00000542035		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
intron-5UTR	ENST00000564184	ENST00000544411		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
intron-5UTR	ENST00000564184	ENST00000340912		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
intron-5UTR	ENST00000564184	ENST00000544171		TCGA	LD	MESO	TCGA-LK-A4O7-01A	GRAMD2	chr15	72454614	-	SENP8	chr15	72431918	+
Frame-shit	ENST00000460680	ENST00000450454		TCGA	LD	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52439781	-	TCEA3	chr1	23745632	-
Frame-shit	ENST00000460680	ENST00000374601		TCGA	LD	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52439781	-	TCEA3	chr1	23745632	-
5CDS-5UTR	ENST00000460680	ENST00000461794		TCGA	LD	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52439781	-	TCEA3	chr1	23745632	-
Frame-shit	ENST00000296288	ENST00000450454		TCGA	LD	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52439781	-	TCEA3	chr1	23745632	-
Frame-shit	ENST00000296288	ENST00000374601		TCGA	LD	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52439781	-	TCEA3	chr1	23745632	-
5CDS-5UTR	ENST00000296288	ENST00000461794		TCGA	LD	MESO	TCGA-MQ-A4LC-01A	BAP1	chr3	52439781	-	TCEA3	chr1	23745632	-
5UTR-5UTR	ENST00000447540	ENST00000570308		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-intron	ENST00000447540	ENST00000219070		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-intron	ENST00000447540	ENST00000543485		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-intron	ENST00000447540	ENST00000437642		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-5UTR	ENST00000566029	ENST00000570308		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-intron	ENST00000566029	ENST00000219070		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-intron	ENST00000566029	ENST00000543485		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
5UTR-intron	ENST00000566029	ENST00000437642		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-5UTR	ENST00000564845	ENST00000570308		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000564845	ENST00000219070		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000564845	ENST00000543485		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000564845	ENST00000437642		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-5UTR	ENST00000398510	ENST00000570308		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000398510	ENST00000219070		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000398510	ENST00000543485		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000398510	ENST00000437642		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-5UTR	ENST00000564582	ENST00000570308		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000564582	ENST00000219070		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000564582	ENST00000543485		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
intron-intron	ENST00000564582	ENST00000437642		TCGA	LD	MESO	TCGA-MQ-A4LJ-01A	CHD9	chr16	53088989	+	MMP2	chr16	55498464	+
3UTR-5UTR	ENST00000498289	ENST00000437310		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	C1orf112	chr1	169652766	+	OR5H14	chr3	97868212	+
intron-5UTR	ENST00000413811	ENST00000437310		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	C1orf112	chr1	169652766	+	OR5H14	chr3	97868212	+
intron-5UTR	ENST00000359326	ENST00000437310		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	C1orf112	chr1	169652766	+	OR5H14	chr3	97868212	+
intron-5UTR	ENST00000456684	ENST00000437310		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	C1orf112	chr1	169652766	+	OR5H14	chr3	97868212	+
intron-5UTR	ENST00000286031	ENST00000437310		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	C1orf112	chr1	169652766	+	OR5H14	chr3	97868212	+
intron-3CDS	ENST00000356770	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000356770	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000356770	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-5UTR	ENST00000356770	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-intron	ENST00000356770	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000394830	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000394830	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000394830	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-5UTR	ENST00000394830	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-intron	ENST00000394830	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
In-frame	ENST00000296302	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
In-frame	ENST00000296302	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
In-frame	ENST00000296302	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000296302	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000296302	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000337303	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000337303	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000337303	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-5UTR	ENST00000337303	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-intron	ENST00000337303	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000410007	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000410007	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000410007	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-5UTR	ENST00000410007	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-intron	ENST00000410007	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000409057	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000409057	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000409057	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-5UTR	ENST00000409057	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-intron	ENST00000409057	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409114	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409114	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
In-frame	ENST00000409114	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
5CDS-5UTR	ENST00000409114	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
5CDS-intron	ENST00000409114	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000409767	ENST00000296438		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000409767	ENST00000415155		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-3CDS	ENST00000409767	ENST00000445170		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-5UTR	ENST00000409767	ENST00000436231		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
intron-intron	ENST00000409767	ENST00000468158		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	PBRM1	chr3	52592265	-	FBXW12	chr3	48416844	+
5UTR-intron	ENST00000570010	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
3UTR-intron	ENST00000563356	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
5UTR-intron	ENST00000568079	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
5UTR-intron	ENST00000464850	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
5UTR-intron	ENST00000332307	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
5UTR-intron	ENST00000393430	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
intron-intron	ENST00000567481	ENST00000300086		TCGA	LD	MESO	TCGA-MQ-A4LM-01A	ZFP1	chr16	75182541	+	TERF2IP	chr16	75793948	+
intron-intron	ENST00000526757	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000526757	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000526757	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
5UTR-intron	ENST00000534127	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
5UTR-5UTR	ENST00000534127	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
5UTR-intron	ENST00000534127	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000313726	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000313726	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000313726	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000357665	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000357665	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000357665	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000530438	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000530438	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000530438	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000530991	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000530991	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000530991	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000526099	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000526099	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000526099	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000534278	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000534278	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000534278	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000531237	ENST00000380252		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-5UTR	ENST00000531237	ENST00000380259		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
intron-intron	ENST00000531237	ENST00000336906		TCGA	LD	MESO	TCGA-MQ-A4LV-01A	ST5	chr11	8932368	-	HBG2	chr11	5276395	-
In-frame	ENST00000225430	ENST00000326245		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
5CDS-intron	ENST00000225430	ENST00000487531		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
In-frame	ENST00000579374	ENST00000326245		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
5CDS-intron	ENST00000579374	ENST00000487531		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
In-frame	ENST00000579260	ENST00000326245		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
5CDS-intron	ENST00000579260	ENST00000487531		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
In-frame	ENST00000582193	ENST00000326245		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
5CDS-intron	ENST00000582193	ENST00000487531		TCGA	LD	MESO	TCGA-MQ-A6BR-01A	RPL19	chr17	37357572	+	ITLN1	chr1	160846606	-
intron-5UTR	ENST00000368468	ENST00000316316		TCGA	LD	MESO	TCGA-SC-A6LM-01A	MAN1A1	chr6	119501022	-	MCM9	chr6	119256155	-
intron-intron	ENST00000368468	ENST00000505485		TCGA	LD	MESO	TCGA-SC-A6LM-01A	MAN1A1	chr6	119501022	-	MCM9	chr6	119256155	-
intron-5UTR	ENST00000368468	ENST00000316068		TCGA	LD	MESO	TCGA-SC-A6LM-01A	MAN1A1	chr6	119501022	-	MCM9	chr6	119256155	-
intron-5UTR	ENST00000368466	ENST00000316316		TCGA	LD	MESO	TCGA-SC-A6LM-01A	MAN1A1	chr6	119501022	-	MCM9	chr6	119256155	-
intron-intron	ENST00000368466	ENST00000505485		TCGA	LD	MESO	TCGA-SC-A6LM-01A	MAN1A1	chr6	119501022	-	MCM9	chr6	119256155	-
intron-5UTR	ENST00000368466	ENST00000316068		TCGA	LD	MESO	TCGA-SC-A6LM-01A	MAN1A1	chr6	119501022	-	MCM9	chr6	119256155	-
Frame-shit	ENST00000539805	ENST00000398178		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
Frame-shit	ENST00000539805	ENST00000334268		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5CDS-intron	ENST00000539805	ENST00000546248		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5CDS-intron	ENST00000539805	ENST00000542443		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5UTR-3CDS	ENST00000480436	ENST00000398178		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5UTR-3CDS	ENST00000480436	ENST00000334268		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5UTR-intron	ENST00000480436	ENST00000546248		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5UTR-intron	ENST00000480436	ENST00000542443		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
Frame-shit	ENST00000337743	ENST00000398178		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
Frame-shit	ENST00000337743	ENST00000334268		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5CDS-intron	ENST00000337743	ENST00000546248		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5CDS-intron	ENST00000337743	ENST00000542443		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
Frame-shit	ENST00000544472	ENST00000398178		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
Frame-shit	ENST00000544472	ENST00000334268		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5CDS-intron	ENST00000544472	ENST00000546248		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
5CDS-intron	ENST00000544472	ENST00000542443		TCGA	LD	MESO	TCGA-SC-A6LM-01A	TASP1	chr20	13610581	-	TRDN	chr6	123600227	-
In-frame	ENST00000255674	ENST00000382713		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
5CDS-intron	ENST00000255674	ENST00000584435		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
In-frame	ENST00000454359	ENST00000382713		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
5CDS-intron	ENST00000454359	ENST00000584435		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
In-frame	ENST00000437017	ENST00000382713		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
5CDS-intron	ENST00000437017	ENST00000584435		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
intron-3CDS	ENST00000579986	ENST00000382713		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
intron-intron	ENST00000579986	ENST00000584435		TCGA	LD	MESO	TCGA-SC-A6LN-01A	RTTN	chr18	67833298	-	DOK6	chr18	67424992	+
Frame-shit	ENST00000370888	ENST00000353801		TCGA	LD	MESO	TCGA-SC-A6LQ-01A	LRRC1	chr6	53660213	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000370888	ENST00000371646		TCGA	LD	MESO	TCGA-SC-A6LQ-01A	LRRC1	chr6	53660213	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000370888	ENST00000371554		TCGA	LD	MESO	TCGA-SC-A6LQ-01A	LRRC1	chr6	53660213	+	HSP90AB1	chr6	44216367	+
Frame-shit	ENST00000370882	ENST00000353801		TCGA	LD	MESO	TCGA-SC-A6LQ-01A	LRRC1	chr6	53660213	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000370882	ENST00000371646		TCGA	LD	MESO	TCGA-SC-A6LQ-01A	LRRC1	chr6	53660213	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000370882	ENST00000371554		TCGA	LD	MESO	TCGA-SC-A6LQ-01A	LRRC1	chr6	53660213	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000326245	ENST00000245907		TCGA	LD	MESO	TCGA-SC-A6LR-01A	ITLN1	chr1	160853218	-	C3	chr19	6702590	-
5CDS-intron	ENST00000326245	ENST00000599668		TCGA	LD	MESO	TCGA-SC-A6LR-01A	ITLN1	chr1	160853218	-	C3	chr19	6702590	-
intron-3CDS	ENST00000487531	ENST00000245907		TCGA	LD	MESO	TCGA-SC-A6LR-01A	ITLN1	chr1	160853218	-	C3	chr19	6702590	-
intron-intron	ENST00000487531	ENST00000599668		TCGA	LD	MESO	TCGA-SC-A6LR-01A	ITLN1	chr1	160853218	-	C3	chr19	6702590	-
Frame-shit	ENST00000424843	ENST00000297578		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
5CDS-5UTR	ENST00000424843	ENST00000543107		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
5CDS-intron	ENST00000424843	ENST00000523701		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
Frame-shit	ENST00000276654	ENST00000297578		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
5CDS-5UTR	ENST00000276654	ENST00000543107		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
5CDS-intron	ENST00000276654	ENST00000523701		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
intron-3CDS	ENST00000518375	ENST00000297578		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
intron-5UTR	ENST00000518375	ENST00000543107		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
intron-intron	ENST00000518375	ENST00000523701		TCGA	LD	MESO	TCGA-SH-A7BC-01A	LRP12	chr8	105601047	-	SLC25A32	chr8	104420012	-
In-frame	ENST00000428956	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000428956	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
In-frame	ENST00000498271	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000498271	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
Frame-shit	ENST00000537134	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
5CDS-intron	ENST00000537134	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000467948	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000467948	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000546746	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000546746	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000375295	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000375295	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000488693	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000488693	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000421274	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000421274	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000550297	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000550297	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000483562	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000483562	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000383325	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000383325	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000549812	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000549812	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-3CDS	ENST00000489963	ENST00000375244		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000451343		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000375247		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000479795		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000433037		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000549232		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000383159		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000489006		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000469250		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000440248		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000550212		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000548649		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000424718		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000475986		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000550539		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000471059		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000551808		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000548628		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000549652		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000553092		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000552665		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000465958		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000546684		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000464376		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000552149		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
intron-intron	ENST00000489963	ENST00000551201		TCGA	LD	MESO	TCGA-SH-A7BD-01A	C4A	chr6	31952185	+	TNXB	chr6	32026167	-
In-frame	ENST00000366630	ENST00000366628		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5CDS-intron	ENST00000366630	ENST00000366627		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5CDS-3UTR	ENST00000366630	ENST00000490098		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
Frame-shit	ENST00000262861	ENST00000366628		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5CDS-intron	ENST00000262861	ENST00000366627		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5CDS-3UTR	ENST00000262861	ENST00000490098		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
intron-3CDS	ENST00000308942	ENST00000366628		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
intron-intron	ENST00000308942	ENST00000366627		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
intron-3UTR	ENST00000308942	ENST00000490098		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5UTR-3CDS	ENST00000486472	ENST00000366628		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5UTR-intron	ENST00000486472	ENST00000366627		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
5UTR-3UTR	ENST00000486472	ENST00000490098		TCGA	LD	MESO	TCGA-SH-A9CU-01A	SIPA1L2	chr1	232629273	-	NTPCR	chr1	233113909	+
intron-3CDS	ENST00000561069	ENST00000353809		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
intron-3CDS	ENST00000561069	ENST00000354638		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
intron-intron	ENST00000561069	ENST00000382996		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000558402	ENST00000353809		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000558402	ENST00000354638		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-intron	ENST00000558402	ENST00000382996		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000558330	ENST00000353809		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000558330	ENST00000354638		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-intron	ENST00000558330	ENST00000382996		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000411764	ENST00000353809		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000411764	ENST00000354638		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-intron	ENST00000411764	ENST00000382996		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000558259	ENST00000353809		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-3CDS	ENST00000558259	ENST00000354638		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5UTR-intron	ENST00000558259	ENST00000382996		TCGA	LD	MESO	TCGA-TS-A7OY-01A	APBA2	chr15	29213952	+	OCA2	chr15	28096621	-
5CDS-3UTR	ENST00000370952	ENST00000486890		TCGA	LD	MESO	TCGA-TS-A7OY-01A	LRRC40	chr1	70671073	-	MINOS1	chr1	19949968	+
5CDS-3UTR	ENST00000370952	ENST00000322753		TCGA	LD	MESO	TCGA-TS-A7OY-01A	LRRC40	chr1	70671073	-	MINOS1	chr1	19949968	+
In-frame	ENST00000340635	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000340635	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
In-frame	ENST00000360047	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000360047	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
In-frame	ENST00000507116	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000507116	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
Frame-shit	ENST00000502484	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000502484	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
In-frame	ENST00000546160	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000546160	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
intron-3CDS	ENST00000502575	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
intron-intron	ENST00000502575	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
Frame-shit	ENST00000358923	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000358923	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
In-frame	ENST00000503258	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000503258	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
In-frame	ENST00000405755	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
5CDS-intron	ENST00000405755	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
intron-3CDS	ENST00000317118	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
intron-intron	ENST00000317118	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
intron-3CDS	ENST00000503947	ENST00000274289		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
intron-intron	ENST00000503947	ENST00000502671		TCGA	LD	MESO	TCGA-TS-A7OY-01A	PDE4D	chr5	58334686	-	PLK2	chr5	57754919	-
Frame-shit	ENST00000300255	ENST00000300258		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
5CDS-5UTR	ENST00000300255	ENST00000472557		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
Frame-shit	ENST00000401402	ENST00000300258		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
5CDS-5UTR	ENST00000401402	ENST00000472557		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
Frame-shit	ENST00000382699	ENST00000300258		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
5CDS-5UTR	ENST00000382699	ENST00000472557		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
intron-3CDS	ENST00000485488	ENST00000300258		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
intron-5UTR	ENST00000485488	ENST00000472557		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	EVA1C	chr21	33785321	+	TCP10L	chr21	33954725	-
Frame-shit	ENST00000221214	ENST00000220325		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	MAPKBP1	chr15	42092112	+	EHD4	chr15	42202061	-
Frame-shit	ENST00000457542	ENST00000220325		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	MAPKBP1	chr15	42092112	+	EHD4	chr15	42202061	-
intron-3CDS	ENST00000260357	ENST00000220325		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	MAPKBP1	chr15	42092112	+	EHD4	chr15	42202061	-
Frame-shit	ENST00000456763	ENST00000220325		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	MAPKBP1	chr15	42092112	+	EHD4	chr15	42202061	-
Frame-shit	ENST00000514566	ENST00000220325		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	MAPKBP1	chr15	42092112	+	EHD4	chr15	42202061	-
3UTR-3CDS	ENST00000507762	ENST00000220325		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	MAPKBP1	chr15	42092112	+	EHD4	chr15	42202061	-
5CDS-intron	ENST00000396673	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000396673	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000396673	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000396672	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000396672	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000396672	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000315204	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000315204	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000315204	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000358872	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000358872	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000358872	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000534493	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000534493	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000534493	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
intron-intron	ENST00000473980	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
intron-intron	ENST00000473980	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
intron-5UTR	ENST00000473980	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000447869	ENST00000261751		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-intron	ENST00000447869	ENST00000412074		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000447869	ENST00000560511		TCGA	LD	MESO	TCGA-TS-A7OZ-01A	STK33	chr11	8462225	-	CHRNB4	chr15	79000447	-
5CDS-5UTR	ENST00000376007	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-intron	ENST00000376007	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-intron	ENST00000376007	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-intron	ENST00000376007	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000469577	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000469577	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000469577	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000469577	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-5UTR	ENST00000376033	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-intron	ENST00000376033	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-intron	ENST00000376033	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
5CDS-intron	ENST00000376033	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000549037	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549037	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549037	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549037	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000551794	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000551794	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000551794	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000551794	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000435971	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000435971	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000435971	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000435971	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000485195	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000485195	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000485195	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000485195	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000428775	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000428775	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000428775	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000428775	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000550674	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550674	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550674	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550674	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000548373	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000548373	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000548373	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000548373	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000439762	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000439762	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000439762	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000439762	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000416335	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000416335	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000416335	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000416335	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000473169	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000473169	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000473169	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000473169	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000550109	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550109	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550109	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550109	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000550609	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550609	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550609	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000550609	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000454306	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000454306	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000454306	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000454306	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000468994	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000468994	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000468994	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000468994	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000432252	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000432252	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000432252	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000432252	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000551341	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000551341	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000551341	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000551341	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000547457	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547457	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547457	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547457	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000383464	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000383464	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000383464	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000383464	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000470109	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000470109	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000470109	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000470109	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000383455	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000383455	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000383455	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000383455	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000547056	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547056	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547056	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547056	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000549383	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549383	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549383	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549383	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000458561	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000458561	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000458561	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000458561	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000466607	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000466607	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000466607	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000466607	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000414956	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000414956	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000414956	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000414956	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000547669	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547669	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547669	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000547669	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000549768	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549768	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549768	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000549768	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000430737	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000430737	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000430737	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000430737	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000484613	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000484613	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000484613	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000484613	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-5UTR	ENST00000422962	ENST00000375156		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000422962	ENST00000425378		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000422962	ENST00000456854		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
intron-intron	ENST00000422962	ENST00000443350		TCGA	LD	MESO	TCGA-TS-A7P0-01A	PRRC2A	chr6	31602334	+	FKBPL	chr6	32097631	-
Frame-shit	ENST00000339486	ENST00000269221		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
Frame-shit	ENST00000339486	ENST00000590868		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
5CDS-3UTR	ENST00000339486	ENST00000591367		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
Frame-shit	ENST00000581585	ENST00000269221		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
Frame-shit	ENST00000581585	ENST00000590868		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
5CDS-3UTR	ENST00000581585	ENST00000591367		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
Frame-shit	ENST00000577501	ENST00000269221		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
Frame-shit	ENST00000577501	ENST00000590868		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
5CDS-3UTR	ENST00000577501	ENST00000591367		TCGA	LD	MESO	TCGA-TS-A7P0-01A	RIOK3	chr18	21043043	+	C18orf8	chr18	21111589	+
5CDS-intron	ENST00000569600	ENST00000299798		TCGA	LD	MESO	TCGA-TS-A7P6-01A	C16orf70	chr16	67179322	+	SLC9A5	chr16	67296115	+
5CDS-intron	ENST00000569600	ENST00000561472		TCGA	LD	MESO	TCGA-TS-A7P6-01A	C16orf70	chr16	67179322	+	SLC9A5	chr16	67296115	+
5CDS-intron	ENST00000219139	ENST00000299798		TCGA	LD	MESO	TCGA-TS-A7P6-01A	C16orf70	chr16	67179322	+	SLC9A5	chr16	67296115	+
5CDS-intron	ENST00000219139	ENST00000561472		TCGA	LD	MESO	TCGA-TS-A7P6-01A	C16orf70	chr16	67179322	+	SLC9A5	chr16	67296115	+
intron-intron	ENST00000569683	ENST00000299798		TCGA	LD	MESO	TCGA-TS-A7P6-01A	C16orf70	chr16	67179322	+	SLC9A5	chr16	67296115	+
intron-intron	ENST00000569683	ENST00000561472		TCGA	LD	MESO	TCGA-TS-A7P6-01A	C16orf70	chr16	67179322	+	SLC9A5	chr16	67296115	+
Frame-shit	ENST00000356948	ENST00000342878		TCGA	LD	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	193712	+
Frame-shit	ENST00000350092	ENST00000342878		TCGA	LD	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	193712	+
Frame-shit	ENST00000349038	ENST00000342878		TCGA	LD	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	193712	+
Frame-shit	ENST00000394601	ENST00000342878		TCGA	LD	MESO	TCGA-TS-A7P6-01A	PTBP1	chr19	799443	+	SCGB1C1	chr11	193712	+
intron-3CDS	ENST00000309060	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000309060	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000540170	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000540170	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000559234	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000559234	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000557816	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000557816	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000558993	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000558993	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000544979	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000544979	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
5UTR-3CDS	ENST00000560361	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
5UTR-3CDS	ENST00000560361	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000432768	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
intron-3CDS	ENST00000432768	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
5UTR-3CDS	ENST00000561291	ENST00000270066		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
5UTR-3CDS	ENST00000561291	ENST00000601170		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZHX3	chr20	39896103	-	SMG9	chr19	44242369	-
5UTR-3CDS	ENST00000421239	ENST00000598205		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000421239	ENST00000376970		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000421239	ENST00000425460		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000421239	ENST00000440075		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000421239	ENST00000601313		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000421239	ENST00000262269		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000421239	ENST00000596571		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000598205		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000376970		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000425460		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000440075		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000601313		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000262269		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
3UTR-3CDS	ENST00000596382	ENST00000596571		TCGA	LD	MESO	TCGA-TS-A7P7-01A	ZNF578	chr19	52960211	+	MYH14	chr19	50766569	+
5UTR-3CDS	ENST00000318789	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
5UTR-3CDS	ENST00000475937	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
5UTR-3CDS	ENST00000493089	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
5UTR-3CDS	ENST00000484350	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
5UTR-3CDS	ENST00000318779	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
intron-3CDS	ENST00000491238	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
intron-3CDS	ENST00000498215	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
intron-3CDS	ENST00000468577	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
intron-3CDS	ENST00000472382	ENST00000449023		TCGA	LD	MESO	TCGA-TS-A7P8-01A	FOXP1	chr3	71348971	-	SRGAP3-AS4	chr3	9298443	+
Frame-shit	ENST00000347330	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000413209	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000338641	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000403435	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000361452	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000403999	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000334961	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000353887	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000361166	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000397789	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000361676	ENST00000216144		TCGA	LD	MESO	TCGA-TS-A8AI-01A	NF2	chr22	30000101	+	CABP7	chr22	30123651	+
Frame-shit	ENST00000315717	ENST00000336617		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
Frame-shit	ENST00000315717	ENST00000422660		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
5CDS-3UTR	ENST00000315717	ENST00000495244		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
Frame-shit	ENST00000295685	ENST00000336617		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
Frame-shit	ENST00000295685	ENST00000422660		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
5CDS-3UTR	ENST00000295685	ENST00000495244		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
3UTR-3CDS	ENST00000477992	ENST00000336617		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
3UTR-3CDS	ENST00000477992	ENST00000422660		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
3UTR-3UTR	ENST00000477992	ENST00000495244		TCGA	LD	MESO	TCGA-TS-A8AV-01A	ARPC2	chr2	219114644	+	RNASEH2B	chr13	51519563	+
Frame-shit	ENST00000322475	ENST00000361840		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
Frame-shit	ENST00000322475	ENST00000378195		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
5CDS-intron	ENST00000322475	ENST00000492258		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
Frame-shit	ENST00000280057	ENST00000361840		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
Frame-shit	ENST00000280057	ENST00000378195		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
5CDS-intron	ENST00000280057	ENST00000492258		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
3UTR-3CDS	ENST00000497449	ENST00000361840		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
3UTR-3CDS	ENST00000497449	ENST00000378195		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
3UTR-intron	ENST00000497449	ENST00000492258		TCGA	LD	MESO	TCGA-TS-A8AV-01A	FAM124A	chr13	51796705	+	SPRYD7	chr13	50502221	-
intron-3CDS	ENST00000453660	ENST00000260191		TCGA	LD	MESO	TCGA-TS-A8AY-01A	ABO	chr9	136127865	-	HTR3B	chr11	113802106	+
intron-3CDS	ENST00000453660	ENST00000537778		TCGA	LD	MESO	TCGA-TS-A8AY-01A	ABO	chr9	136127865	-	HTR3B	chr11	113802106	+
In-frame	ENST00000377673	ENST00000456098		TCGA	LD	MESO	TCGA-TS-A8AY-01A	FAM216A	chr12	110910923	+	IGF1	chr12	102813468	-
In-frame	ENST00000377673	ENST00000337514		TCGA	LD	MESO	TCGA-TS-A8AY-01A	FAM216A	chr12	110910923	+	IGF1	chr12	102813468	-
5CDS-intron	ENST00000377673	ENST00000481539		TCGA	LD	MESO	TCGA-TS-A8AY-01A	FAM216A	chr12	110910923	+	IGF1	chr12	102813468	-
5CDS-intron	ENST00000377673	ENST00000392904		TCGA	LD	MESO	TCGA-TS-A8AY-01A	FAM216A	chr12	110910923	+	IGF1	chr12	102813468	-
5CDS-intron	ENST00000377673	ENST00000424202		TCGA	LD	MESO	TCGA-TS-A8AY-01A	FAM216A	chr12	110910923	+	IGF1	chr12	102813468	-
5CDS-intron	ENST00000377673	ENST00000307046		TCGA	LD	MESO	TCGA-TS-A8AY-01A	FAM216A	chr12	110910923	+	IGF1	chr12	102813468	-
5CDS-5UTR	ENST00000283928	ENST00000457166		TCGA	LD	MESO	TCGA-TS-A8AY-01A	JAZF1	chr7	28031528	-	GTF2IRD1P1	chr7	66304921	-
intron-5UTR	ENST00000466516	ENST00000457166		TCGA	LD	MESO	TCGA-TS-A8AY-01A	JAZF1	chr7	28031528	-	GTF2IRD1P1	chr7	66304921	-
Frame-shit	ENST00000493763	ENST00000525975		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000493763	ENST00000379016		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000493763	ENST00000303296		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000493763	ENST00000456517		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000493763	ENST00000534262		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
3UTR-3CDS	ENST00000397415	ENST00000525975		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
3UTR-3CDS	ENST00000397415	ENST00000379016		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
3UTR-3CDS	ENST00000397415	ENST00000303296		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
3UTR-3CDS	ENST00000397415	ENST00000456517		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
3UTR-intron	ENST00000397415	ENST00000534262		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000304734	ENST00000525975		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000304734	ENST00000379016		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000304734	ENST00000303296		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000304734	ENST00000456517		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000304734	ENST00000534262		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000424341	ENST00000525975		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000424341	ENST00000379016		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000424341	ENST00000303296		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000424341	ENST00000456517		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000424341	ENST00000534262		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000602561	ENST00000525975		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000602561	ENST00000379016		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000602561	ENST00000303296		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
Frame-shit	ENST00000602561	ENST00000456517		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
5CDS-intron	ENST00000602561	ENST00000534262		TCGA	LD	MESO	TCGA-TS-A8AY-01A	RPL7L1	chr6	42848704	+	HIPK3	chr11	33368839	+
In-frame	ENST00000543117	ENST00000450873		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000543117	ENST00000284957		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000543117	ENST00000439720		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000543117	ENST00000437078		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
5CDS-3UTR	ENST00000543117	ENST00000484547		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000265393	ENST00000450873		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000265393	ENST00000284957		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000265393	ENST00000439720		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000265393	ENST00000437078		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
5CDS-3UTR	ENST00000265393	ENST00000484547		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000409980	ENST00000450873		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000409980	ENST00000284957		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000409980	ENST00000439720		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000409980	ENST00000437078		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
5CDS-3UTR	ENST00000409980	ENST00000484547		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000433216	ENST00000450873		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000433216	ENST00000284957		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000433216	ENST00000439720		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000433216	ENST00000437078		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
5CDS-3UTR	ENST00000433216	ENST00000484547		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000396319	ENST00000450873		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000396319	ENST00000284957		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000396319	ENST00000439720		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
In-frame	ENST00000396319	ENST00000437078		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
5CDS-3UTR	ENST00000396319	ENST00000484547		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
3UTR-3CDS	ENST00000494033	ENST00000450873		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
3UTR-3CDS	ENST00000494033	ENST00000284957		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
3UTR-3CDS	ENST00000494033	ENST00000439720		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
3UTR-3CDS	ENST00000494033	ENST00000437078		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
3UTR-3UTR	ENST00000494033	ENST00000484547		TCGA	LD	MESO	TCGA-TS-A8AY-01A	TAX1BP1	chr7	27809453	+	RABGEF1	chr7	66260498	+
intron-intron	ENST00000296440	ENST00000416872		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000296440	ENST00000449956		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000296440	ENST00000465243		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
5UTR-intron	ENST00000358459	ENST00000416872		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
5UTR-intron	ENST00000358459	ENST00000449956		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
5UTR-intron	ENST00000358459	ENST00000465243		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
5UTR-intron	ENST00000358536	ENST00000416872		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
5UTR-intron	ENST00000358536	ENST00000449956		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
5UTR-intron	ENST00000358536	ENST00000465243		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000448774	ENST00000416872		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000448774	ENST00000449956		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000448774	ENST00000465243		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000456774	ENST00000416872		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000456774	ENST00000449956		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000456774	ENST00000465243		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000465117	ENST00000416872		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000465117	ENST00000449956		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
intron-intron	ENST00000465117	ENST00000465243		TCGA	LD	MESO	TCGA-UD-AABY-01A	PLXNB1	chr3	48470662	-	ITIH3	chr3	52840119	+
In-frame	ENST00000316052	ENST00000436750		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
In-frame	ENST00000316052	ENST00000455213		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-5UTR	ENST00000316052	ENST00000403422		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-intron	ENST00000316052	ENST00000528323		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-intron	ENST00000316052	ENST00000284503		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
In-frame	ENST00000525936	ENST00000436750		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
In-frame	ENST00000525936	ENST00000455213		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-5UTR	ENST00000525936	ENST00000403422		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-intron	ENST00000525936	ENST00000528323		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-intron	ENST00000525936	ENST00000284503		TCGA	LD	MESO	TCGA-UD-AAC4-01A	EXOSC4	chr8	145133803	+	NEIL2	chr8	11637108	+
5CDS-intron	ENST00000402363	ENST00000372587		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000402363	ENST00000490783		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000537798	ENST00000372587		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000537798	ENST00000490783		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000350030	ENST00000372587		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000350030	ENST00000490783		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000372052	ENST00000372587		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000372052	ENST00000490783		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000351223	ENST00000372587		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
5CDS-intron	ENST00000351223	ENST00000490783		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
3UTR-intron	ENST00000530073	ENST00000372587		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
3UTR-intron	ENST00000530073	ENST00000490783		TCGA	LD	MESO	TCGA-UD-AAC4-01A	NASP	chr1	46081072	+	EDN2	chr1	41948946	-
Frame-shit	ENST00000400324	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400324	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400324	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400324	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400324	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400330	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400330	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400330	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400330	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400330	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400319	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400319	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400319	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400319	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400319	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400320	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000400320	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400320	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400320	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000400320	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000377908	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000377908	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000377908	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000377908	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
5CDS-intron	ENST00000377908	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-3CDS	ENST00000267215	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-3CDS	ENST00000267215	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-intron	ENST00000267215	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-intron	ENST00000267215	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-intron	ENST00000267215	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-3CDS	ENST00000465066	ENST00000544246		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-3CDS	ENST00000465066	ENST00000377865		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-intron	ENST00000465066	ENST00000456367		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-intron	ENST00000465066	ENST00000328454		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
intron-intron	ENST00000465066	ENST00000377861		TCGA	LD	MESO	TCGA-UD-AAC5-01A	DIAPH3	chr13	60348323	-	PCDH9	chr13	67477737	-
Frame-shit	ENST00000575142	ENST00000320785		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
5CDS-intron	ENST00000575142	ENST00000573815		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
Frame-shit	ENST00000206020	ENST00000320785		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
5CDS-intron	ENST00000206020	ENST00000573815		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
intron-3CDS	ENST00000573366	ENST00000320785		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
intron-intron	ENST00000573366	ENST00000573815		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
5UTR-3CDS	ENST00000571023	ENST00000320785		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
5UTR-intron	ENST00000571023	ENST00000573815		TCGA	LD	MESO	TCGA-UD-AAC7-01A	SPAG7	chr17	4871015	-	KIF1C	chr17	4910210	+
In-frame	ENST00000383701	ENST00000478300		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000383701	ENST00000295894		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000383701	ENST00000479198		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000383701	ENST00000478744		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000383701	ENST00000460711		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000383701	ENST00000465156		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000295571	ENST00000478300		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000295571	ENST00000295894		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000295571	ENST00000479198		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000295571	ENST00000478744		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000295571	ENST00000460711		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000295571	ENST00000465156		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000540955	ENST00000478300		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000540955	ENST00000295894		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
intron-3CDS	ENST00000540955	ENST00000479198		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000540955	ENST00000478744		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000540955	ENST00000460711		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
intron-3UTR	ENST00000540955	ENST00000465156		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000540764	ENST00000478300		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000540764	ENST00000295894		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
In-frame	ENST00000540764	ENST00000479198		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000540764	ENST00000478744		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000540764	ENST00000460711		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000540764	ENST00000465156		TCGA	LD	MESO	TCGA-UT-A88C-01B	EOGT	chr3	69047162	-	SYNPR	chr3	63466508	+
5CDS-intron	ENST00000415676	ENST00000550629		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000415676	ENST00000465950		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000415676	ENST00000369367		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000415676	ENST00000549162		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000415676	ENST00000419565		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000415676	ENST00000395454		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000415676	ENST00000395453		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000288197	ENST00000550629		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000288197	ENST00000465950		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000288197	ENST00000369367		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000288197	ENST00000549162		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000288197	ENST00000419565		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000288197	ENST00000395454		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000288197	ENST00000395453		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000474759	ENST00000550629		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000474759	ENST00000465950		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000474759	ENST00000369367		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000474759	ENST00000549162		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000474759	ENST00000419565		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000474759	ENST00000395454		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000474759	ENST00000395453		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000490478	ENST00000550629		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000490478	ENST00000465950		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000490478	ENST00000369367		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000490478	ENST00000549162		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000490478	ENST00000419565		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000490478	ENST00000395454		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000490478	ENST00000395453		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-intron	ENST00000478261	ENST00000550629		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-intron	ENST00000478261	ENST00000465950		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000478261	ENST00000369367		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-intron	ENST00000478261	ENST00000549162		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000478261	ENST00000419565		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000478261	ENST00000395454		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000478261	ENST00000395453		TCGA	LD	MESO	TCGA-UT-A88E-01B	CACNA2D3	chr3	54604131	+	SCAF11	chr12	46357971	-
intron-3CDS	ENST00000382303	ENST00000382082		TCGA	LD	MESO	TCGA-UT-A97Y-01A	KANK1	chr9	504754	+	KCNV2	chr9	2729446	+
3UTR-3CDS	ENST00000489369	ENST00000382082		TCGA	LD	MESO	TCGA-UT-A97Y-01A	KANK1	chr9	504754	+	KCNV2	chr9	2729446	+
5UTR-3CDS	ENST00000382297	ENST00000382082		TCGA	LD	MESO	TCGA-UT-A97Y-01A	KANK1	chr9	504754	+	KCNV2	chr9	2729446	+
intron-3CDS	ENST00000382293	ENST00000382082		TCGA	LD	MESO	TCGA-UT-A97Y-01A	KANK1	chr9	504754	+	KCNV2	chr9	2729446	+
5CDS-intron	ENST00000392455	ENST00000414318		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-5UTR	ENST00000392455	ENST00000253692		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-intron	ENST00000392455	ENST00000429383		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-5UTR	ENST00000392455	ENST00000446818		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-intron	ENST00000392455	ENST00000429924		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-intron	ENST00000392456	ENST00000414318		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-5UTR	ENST00000392456	ENST00000253692		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-intron	ENST00000392456	ENST00000429383		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-5UTR	ENST00000392456	ENST00000446818		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5CDS-intron	ENST00000392456	ENST00000429924		TCGA	LD	MESO	TCGA-XT-AASU-01A	CCDC50	chr3	191087825	+	TBC1D5	chr3	17665405	-
5UTR-5UTR	ENST00000543307	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000543307	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392219	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000541435	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000590686	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000342879	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000588699	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000423817	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
5UTR-5UTR	ENST00000392218	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000591716	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000454903		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000406242		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000604404		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000435734		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000603181		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000604255		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000346446		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000344013		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000603449		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000406988		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000605550		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000604804		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000605552		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000535103		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000603524		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000604621		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
intron-5UTR	ENST00000392217	ENST00000605677		TCGA	LD	MESO	TCGA-XT-AASU-01A	FXYD5	chr19	35645712	+	FXYD3	chr19	35610267	+
3UTR-5UTR	ENST00000414046	ENST00000491161		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-5UTR	ENST00000414046	ENST00000376073		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-5UTR	ENST00000414046	ENST00000340027		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-5UTR	ENST00000414046	ENST00000376072		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-5UTR	ENST00000414046	ENST00000376071		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000497117		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000420556		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000432392		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000457547		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000419728		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000498490		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000433654		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000447248		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000418936		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000420485		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000491762		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000439584		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000415123		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000436623		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000455448		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000459657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000455825		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000435674		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000412603		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000438663		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000495500		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000383478		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000383477		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000383476		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000400241		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000494590		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000430599		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000446756		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000441372		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000453657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000489751		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000437517		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000436253		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000452296		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
3UTR-intron	ENST00000414046	ENST00000419086		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000419355	ENST00000491161		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000419355	ENST00000376073		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000419355	ENST00000340027		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000419355	ENST00000376072		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000419355	ENST00000376071		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000497117		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000420556		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000432392		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000457547		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000419728		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000498490		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000433654		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000447248		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000418936		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000420485		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000491762		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000439584		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000415123		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000436623		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000455448		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000459657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000455825		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000435674		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000412603		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000438663		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000495500		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000383478		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000383477		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000383476		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000400241		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000494590		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000430599		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000446756		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000441372		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000453657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000489751		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000437517		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000436253		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000452296		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000419355	ENST00000419086		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000457127	ENST00000491161		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000457127	ENST00000376073		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000457127	ENST00000340027		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000457127	ENST00000376072		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000457127	ENST00000376071		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000497117		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000420556		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000432392		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000457547		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000419728		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000498490		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000433654		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000447248		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000418936		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000420485		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000491762		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000439584		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000415123		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000436623		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000455448		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000459657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000455825		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000435674		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000412603		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000438663		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000495500		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000383478		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000383477		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000383476		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000400241		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000494590		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000430599		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000446756		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000441372		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000453657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000489751		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000437517		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000436253		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000452296		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000457127	ENST00000419086		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000423496	ENST00000491161		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000423496	ENST00000376073		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000423496	ENST00000340027		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000423496	ENST00000376072		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000423496	ENST00000376071		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000497117		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000420556		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000432392		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000457547		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000419728		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000498490		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000433654		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000447248		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000418936		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000420485		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000491762		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000439584		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000415123		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000436623		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000455448		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000459657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000455825		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000435674		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000412603		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000438663		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000495500		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000383478		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000383477		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000383476		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000400241		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000494590		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000430599		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000446756		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000441372		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000453657		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000489751		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000437517		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000436253		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000452296		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
intron-intron	ENST00000423496	ENST00000419086		TCGA	LD	MESO	TCGA-XT-AASU-01A	HCP5	chr6	31368540	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000333039	ENST00000382565		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000382578		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000382566		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000348295		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000544772		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000404276		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000328354		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000405598		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000382580		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000402731		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-5UTR	ENST00000333039	ENST00000403642		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
5CDS-intron	ENST00000333039	ENST00000464581		TCGA	LD	MESO	TCGA-XT-AASU-01A	NPTXR	chr22	39239240	-	CHEK2	chr22	29130715	-
intron-intron	ENST00000383744	ENST00000396556		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000383744	ENST00000438237		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000383744	ENST00000467647		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000344387	ENST00000396556		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000344387	ENST00000438237		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000344387	ENST00000467647		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000383745	ENST00000396556		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000383745	ENST00000438237		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000383745	ENST00000467647		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000396058	ENST00000396556		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000396058	ENST00000438237		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
intron-intron	ENST00000396058	ENST00000467647		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF197	chr3	44627705	+	OSBPL10	chr3	32088095	-
3UTR-intron	ENST00000468987	ENST00000396556		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF660	chr3	44627705	+	OSBPL10	chr3	32088095	-
3UTR-intron	ENST00000468987	ENST00000438237		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF660	chr3	44627705	+	OSBPL10	chr3	32088095	-
3UTR-intron	ENST00000468987	ENST00000467647		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF660	chr3	44627705	+	OSBPL10	chr3	32088095	-
5UTR-intron	ENST00000322734	ENST00000396556		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF660	chr3	44627705	+	OSBPL10	chr3	32088095	-
5UTR-intron	ENST00000322734	ENST00000438237		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF660	chr3	44627705	+	OSBPL10	chr3	32088095	-
5UTR-intron	ENST00000322734	ENST00000467647		TCGA	LD	MESO	TCGA-XT-AASU-01A	ZNF660	chr3	44627705	+	OSBPL10	chr3	32088095	-
In-frame	ENST00000301015	ENST00000304372		TCGA	LD	MESO	TCGA-YS-AA4M-01A	PIEZO1	chr16	88791824	-	KCTD19	chr16	67337240	-
5CDS-5UTR	ENST00000301015	ENST00000562860		TCGA	LD	MESO	TCGA-YS-AA4M-01A	PIEZO1	chr16	88791824	-	KCTD19	chr16	67337240	-
intron-3CDS	ENST00000327397	ENST00000304372		TCGA	LD	MESO	TCGA-YS-AA4M-01A	PIEZO1	chr16	88791824	-	KCTD19	chr16	67337240	-
intron-5UTR	ENST00000327397	ENST00000562860		TCGA	LD	MESO	TCGA-YS-AA4M-01A	PIEZO1	chr16	88791824	-	KCTD19	chr16	67337240	-
intron-3CDS	ENST00000299237	ENST00000304372		TCGA	LD	MESO	TCGA-YS-AA4M-01A	ZNF319	chr16	58031511	-	KCTD19	chr16	67337242	-
intron-5UTR	ENST00000299237	ENST00000562860		TCGA	LD	MESO	TCGA-YS-AA4M-01A	ZNF319	chr16	58031511	-	KCTD19	chr16	67337242	-
Frame-shit	ENST00000419067	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000419067	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000419067	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000419067	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000419067	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000338791	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000338791	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000338791	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000338791	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000338791	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000496200	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000496200	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000496200	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000496200	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000496200	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000354269	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000354269	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000354269	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000354269	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000354269	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000378717	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000378717	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000378717	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000378717	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000378717	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
In-frame	ENST00000343214	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
In-frame	ENST00000343214	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
In-frame	ENST00000343214	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
In-frame	ENST00000343214	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000343214	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000348127	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000348127	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000348127	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000348127	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000348127	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000470772	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000470772	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000470772	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000470772	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000470772	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000480861	ENST00000444921		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000480861	ENST00000339582		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000480861	ENST00000358373		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000480861	ENST00000405249		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
5CDS-5UTR	ENST00000480861	ENST00000480995		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	IMPDH1	chr7	128043760	-	GRM8	chr7	126544737	-
Frame-shit	ENST00000575270	ENST00000449359		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000575270	ENST00000564441		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000575270	ENST00000441236		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000575270	ENST00000348497		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000575270	ENST00000339507		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
Frame-shit	ENST00000349223	ENST00000449359		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000349223	ENST00000564441		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000349223	ENST00000441236		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000349223	ENST00000348497		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000349223	ENST00000339507		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
Frame-shit	ENST00000329524	ENST00000449359		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000329524	ENST00000564441		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000329524	ENST00000441236		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000329524	ENST00000348497		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000329524	ENST00000339507		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
Frame-shit	ENST00000346183	ENST00000449359		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000346183	ENST00000564441		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000346183	ENST00000441236		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000346183	ENST00000348497		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5CDS-intron	ENST00000346183	ENST00000339507		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
3UTR-3CDS	ENST00000535127	ENST00000449359		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
3UTR-intron	ENST00000535127	ENST00000564441		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
3UTR-intron	ENST00000535127	ENST00000441236		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
3UTR-intron	ENST00000535127	ENST00000348497		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
3UTR-intron	ENST00000535127	ENST00000339507		TCGA	LD	MESO	TCGA-ZN-A9VO-01A	NFATC3	chr16	68225678	+	PRMT7	chr16	68386151	+
5UTR-3CDS	ENST00000356093	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000356093	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000356093	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3CDS	ENST00000398863	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000398863	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000398863	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3CDS	ENST00000343067	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000343067	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000343067	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3CDS	ENST00000349460	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000349460	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000349460	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3CDS	ENST00000373800	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000373800	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000373800	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3CDS	ENST00000347529	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000347529	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3UTR	ENST00000347529	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3CDS	ENST00000373798	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3UTR	ENST00000373798	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3UTR	ENST00000373798	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3CDS	ENST00000373797	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3UTR	ENST00000373797	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3UTR	ENST00000373797	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3CDS	ENST00000460378	ENST00000288048		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3UTR	ENST00000460378	ENST00000474179		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
intron-3UTR	ENST00000460378	ENST00000376210		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213720	+	C1orf158	chr1	12806404	+
5UTR-3CDS	ENST00000356093	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
5UTR-3CDS	ENST00000398863	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
5UTR-3CDS	ENST00000343067	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
5UTR-3CDS	ENST00000349460	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
5UTR-3CDS	ENST00000373800	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
5UTR-3CDS	ENST00000347529	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
intron-3CDS	ENST00000373798	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
intron-3CDS	ENST00000373797	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
intron-3CDS	ENST00000460378	ENST00000357726		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	EPB41	chr1	29213722	+	PRAMEF12	chr1	12835010	+
Frame-shit	ENST00000569451	ENST00000326181		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	GFER	chr16	2034477	+	TRAF7	chr16	2218078	+
Frame-shit	ENST00000248114	ENST00000326181		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	GFER	chr16	2034477	+	TRAF7	chr16	2218078	+
intron-3CDS	ENST00000567719	ENST00000326181		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	GFER	chr16	2034477	+	TRAF7	chr16	2218078	+
5UTR-intron	ENST00000352456	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000352456	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
5UTR-intron	ENST00000595018	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000392006	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000378215	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000602130	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000593587	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000263367	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000485760		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000371236		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000371234		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000420954		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000439789		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000414851		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000371231		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
intron-intron	ENST00000594207	ENST00000371230		TCGA	LD	MESO	TCGA-ZN-A9VP-01A	HNRNPUL1	chr19	41768487	+	DAB1	chr1	58436537	-
Frame-shit	ENST00000339486	ENST00000370033		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
5CDS-intron	ENST00000339486	ENST00000311122		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
5CDS-intron	ENST00000339486	ENST00000495001		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
Frame-shit	ENST00000581585	ENST00000370033		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
5CDS-intron	ENST00000581585	ENST00000311122		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
5CDS-intron	ENST00000581585	ENST00000495001		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
Frame-shit	ENST00000577501	ENST00000370033		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
5CDS-intron	ENST00000577501	ENST00000311122		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
5CDS-intron	ENST00000577501	ENST00000495001		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	RIOK3	chr18	21033466	+	C10orf76	chr10	103735057	-
intron-3CDS	ENST00000450466	ENST00000304621		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000450466	ENST00000317571		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000450466	ENST00000578150		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000450466	ENST00000584250		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000450466	ENST00000577185		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000450466	ENST00000540918		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
In-frame	ENST00000383233	ENST00000304621		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
In-frame	ENST00000383233	ENST00000317571		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000383233	ENST00000578150		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000383233	ENST00000584250		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000383233	ENST00000577185		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000383233	ENST00000540918		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
In-frame	ENST00000542162	ENST00000304621		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
In-frame	ENST00000542162	ENST00000317571		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000542162	ENST00000578150		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000542162	ENST00000584250		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000542162	ENST00000577185		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000542162	ENST00000540918		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
In-frame	ENST00000399707	ENST00000304621		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
In-frame	ENST00000399707	ENST00000317571		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000399707	ENST00000578150		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000399707	ENST00000584250		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000399707	ENST00000577185		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
5CDS-intron	ENST00000399707	ENST00000540918		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000475185	ENST00000304621		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-3CDS	ENST00000475185	ENST00000317571		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000475185	ENST00000578150		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000475185	ENST00000584250		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000475185	ENST00000577185		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
intron-intron	ENST00000475185	ENST00000540918		TCGA	LD	MESO	TCGA-ZN-A9VQ-01A	TMEM241	chr18	20979530	-	TTC39C	chr18	21694518	+
Frame-shit	ENST00000347528	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000347528	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000347528	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000347528	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000347528	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000289734	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000289734	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000289734	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000289734	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000289734	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000379758	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000379758	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000379758	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000379758	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000379758	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000396942	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000396942	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000396942	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000396942	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000396942	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000396945	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000396945	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000396945	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000396945	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000396945	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000352337	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000352337	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000352337	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000352337	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000352337	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000265709	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000265709	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
Frame-shit	ENST00000265709	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
In-frame	ENST00000265709	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000265709	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000457297	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000457297	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000457297	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000457297	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-5UTR	ENST00000457297	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522231	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522231	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522231	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522231	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-5UTR	ENST00000522231	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522543	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522543	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522543	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000522543	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-5UTR	ENST00000522543	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000314214	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000314214	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000314214	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000314214	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-5UTR	ENST00000314214	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000521407	ENST00000327671		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000521407	ENST00000518672		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000521407	ENST00000524021		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-3CDS	ENST00000521407	ENST00000335589		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
intron-5UTR	ENST00000521407	ENST00000518076		TCGA	RV	OV	TCGA-24-1604-01A	ANK1	chr8	41553881	-	FUT10	chr8	33247316	-
5CDS-5UTR	ENST00000370944	ENST00000377154		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-5UTR	ENST00000370944	ENST00000543825		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000451227		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000446761		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000549299		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000441440		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000458123		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000400698		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000230223		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000453123		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000458372		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000444009		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000550240		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000548546		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000418692		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000370944	ENST00000421859		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-5UTR	ENST00000262346	ENST00000377154		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-5UTR	ENST00000262346	ENST00000543825		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000451227		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000446761		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000549299		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000441440		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000458123		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000400698		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000230223		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000453123		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000458372		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000444009		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000550240		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000548546		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000418692		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-intron	ENST00000262346	ENST00000421859		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-5UTR	ENST00000464236	ENST00000377154		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-5UTR	ENST00000464236	ENST00000543825		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000451227		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000446761		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000549299		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000441440		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000458123		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000400698		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000230223		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000453123		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000458372		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000444009		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000550240		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000548546		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000418692		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
intron-intron	ENST00000464236	ENST00000421859		TCGA	RV	OV	TCGA-25-1315-01A	ANKRD13C	chr1	70766447	-	OR5V1	chr6	29324054	-
5CDS-3UTR	ENST00000303714	ENST00000471727		TCGA	RV	OV	TCGA-24-1469-01A	ANTXR1	chr2	69298919	+	APLF	chr2	68804952	+
5CDS-3UTR	ENST00000303714	ENST00000303795		TCGA	RV	OV	TCGA-24-1469-01A	ANTXR1	chr2	69298919	+	APLF	chr2	68804952	+
5CDS-3UTR	ENST00000409829	ENST00000471727		TCGA	RV	OV	TCGA-24-1469-01A	ANTXR1	chr2	69298919	+	APLF	chr2	68804952	+
5CDS-3UTR	ENST00000409829	ENST00000303795		TCGA	RV	OV	TCGA-24-1469-01A	ANTXR1	chr2	69298919	+	APLF	chr2	68804952	+
5CDS-3UTR	ENST00000409349	ENST00000471727		TCGA	RV	OV	TCGA-24-1469-01A	ANTXR1	chr2	69298919	+	APLF	chr2	68804952	+
5CDS-3UTR	ENST00000409349	ENST00000303795		TCGA	RV	OV	TCGA-24-1469-01A	ANTXR1	chr2	69298919	+	APLF	chr2	68804952	+
In-frame	ENST00000371120	ENST00000371191		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
In-frame	ENST00000371120	ENST00000407417		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000371120	ENST00000479364		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000371120	ENST00000371189		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000371120	ENST00000403491		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000371120	ENST00000371187		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000371120	ENST00000485903		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000371120	ENST00000371185		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-intron	ENST00000371120	ENST00000371184		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-intron	ENST00000371120	ENST00000357977		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
In-frame	ENST00000317868	ENST00000371191		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
In-frame	ENST00000317868	ENST00000407417		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000317868	ENST00000479364		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000317868	ENST00000371189		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000317868	ENST00000403491		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000317868	ENST00000371187		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000317868	ENST00000485903		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-3UTR	ENST00000317868	ENST00000371185		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-intron	ENST00000317868	ENST00000371184		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
5CDS-intron	ENST00000317868	ENST00000357977		TCGA	RV	OV	TCGA-20-1684-01A	ATG4C	chr1	63270926	+	NFIA	chr1	61798184	+
In-frame	ENST00000381655	ENST00000298248		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
In-frame	ENST00000381655	ENST00000382812		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000381655	ENST00000480748		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
In-frame	ENST00000255283	ENST00000298248		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
In-frame	ENST00000255283	ENST00000382812		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000255283	ENST00000480748		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
3UTR-3CDS	ENST00000491840	ENST00000298248		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
3UTR-3CDS	ENST00000491840	ENST00000382812		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
3UTR-intron	ENST00000491840	ENST00000480748		TCGA	RV	OV	TCGA-24-1550-01A	ATP8A2	chr13	26436546	+	CRYL1	chr13	20987526	-
Frame-shit	ENST00000262320	ENST00000415149		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000262320	ENST00000402543		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000262320	ENST00000325805		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000262320	ENST00000416476		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000262320	ENST00000406780		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
5CDS-intron	ENST00000262320	ENST00000473542		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000354866	ENST00000415149		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000354866	ENST00000402543		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000354866	ENST00000325805		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000354866	ENST00000416476		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
Frame-shit	ENST00000354866	ENST00000406780		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
5CDS-intron	ENST00000354866	ENST00000473542		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
intron-3CDS	ENST00000481769	ENST00000415149		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
intron-3CDS	ENST00000481769	ENST00000402543		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
intron-3CDS	ENST00000481769	ENST00000325805		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
intron-3CDS	ENST00000481769	ENST00000416476		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
intron-3CDS	ENST00000481769	ENST00000406780		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
intron-intron	ENST00000481769	ENST00000473542		TCGA	RV	OV	TCGA-61-2109-01A	AXIN1	chr16	396148	-	BBX	chr3	107466812	+
5CDS-intron	ENST00000395834	ENST00000556478		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000395834	ENST00000441560		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000395834	ENST00000357032		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000395834	ENST00000354525		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000395834	ENST00000358385		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000216378	ENST00000556478		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000216378	ENST00000441560		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000216378	ENST00000357032		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000216378	ENST00000354525		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5CDS-intron	ENST00000216378	ENST00000358385		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5UTR-intron	ENST00000356146	ENST00000556478		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5UTR-intron	ENST00000356146	ENST00000441560		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5UTR-intron	ENST00000356146	ENST00000357032		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5UTR-intron	ENST00000356146	ENST00000354525		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
5UTR-intron	ENST00000356146	ENST00000358385		TCGA	RV	OV	TCGA-09-1674-01A	CDKL1	chr14	50862419	-	ATL1	chr14	51057659	+
In-frame	ENST00000373381	ENST00000351578		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
In-frame	ENST00000373381	ENST00000515010		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
In-frame	ENST00000373381	ENST00000505428		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
In-frame	ENST00000373381	ENST00000512982		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
In-frame	ENST00000373381	ENST00000540520		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
5CDS-intron	ENST00000373381	ENST00000503065		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373380	ENST00000351578		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373380	ENST00000515010		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373380	ENST00000505428		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373380	ENST00000512982		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373380	ENST00000540520		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-intron	ENST00000373380	ENST00000503065		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373377	ENST00000351578		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373377	ENST00000515010		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373377	ENST00000505428		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373377	ENST00000512982		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373377	ENST00000540520		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-intron	ENST00000373377	ENST00000503065		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373388	ENST00000351578		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373388	ENST00000515010		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373388	ENST00000505428		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373388	ENST00000512982		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000373388	ENST00000540520		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-intron	ENST00000373388	ENST00000503065		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000489419	ENST00000351578		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000489419	ENST00000515010		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000489419	ENST00000505428		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000489419	ENST00000512982		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000489419	ENST00000540520		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-intron	ENST00000489419	ENST00000503065		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000338325	ENST00000351578		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000338325	ENST00000515010		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000338325	ENST00000505428		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000338325	ENST00000512982		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-3CDS	ENST00000338325	ENST00000540520		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
intron-intron	ENST00000338325	ENST00000503065		TCGA	RV	OV	TCGA-24-1557-01A	CSMD2	chr1	34291298	-	FYB	chr5	39153706	-
Frame-shit	ENST00000260184	ENST00000400454		TCGA	RV	OV	TCGA-36-1574-01A	DDX60L	chr4	169374275	-	DSCAM	chr21	41559914	-
Frame-shit	ENST00000511577	ENST00000400454		TCGA	RV	OV	TCGA-36-1574-01A	DDX60L	chr4	169374275	-	DSCAM	chr21	41559914	-
Frame-shit	ENST00000505890	ENST00000400454		TCGA	RV	OV	TCGA-36-1574-01A	DDX60L	chr4	169374275	-	DSCAM	chr21	41559914	-
intron-3CDS	ENST00000515088	ENST00000400454		TCGA	RV	OV	TCGA-36-1574-01A	DDX60L	chr4	169374275	-	DSCAM	chr21	41559914	-
5CDS-intron	ENST00000262593	ENST00000397439		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
5CDS-intron	ENST00000262593	ENST00000547437		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
5CDS-intron	ENST00000262593	ENST00000417570		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
5CDS-intron	ENST00000395939	ENST00000397439		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
5CDS-intron	ENST00000395939	ENST00000547437		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
5CDS-intron	ENST00000395939	ENST00000417570		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
intron-intron	ENST00000491469	ENST00000397439		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
intron-intron	ENST00000491469	ENST00000547437		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
intron-intron	ENST00000491469	ENST00000417570		TCGA	RV	OV	TCGA-36-1571-01A	DOK5	chr20	53260117	+	CLEC17A	chr19	14717805	+
5UTR-5UTR	ENST00000269214	ENST00000327979		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-5UTR	ENST00000269214	ENST00000535356		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-5UTR	ENST00000269214	ENST00000045083		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-intron	ENST00000269214	ENST00000462842		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-5UTR	ENST00000580101	ENST00000327979		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-5UTR	ENST00000580101	ENST00000535356		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-5UTR	ENST00000580101	ENST00000045083		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5UTR-intron	ENST00000580101	ENST00000462842		TCGA	RV	OV	TCGA-24-1555-01A	ESCO1	chr18	19180584	-	FAM65C	chr20	49247393	-
5CDS-5UTR	ENST00000381295	ENST00000331428		TCGA	RV	OV	TCGA-36-1571-01A	EXOC1	chr4	56737399	+	XKR3	chr22	17288973	-
5CDS-5UTR	ENST00000346134	ENST00000331428		TCGA	RV	OV	TCGA-36-1571-01A	EXOC1	chr4	56737399	+	XKR3	chr22	17288973	-
5CDS-5UTR	ENST00000349598	ENST00000331428		TCGA	RV	OV	TCGA-36-1571-01A	EXOC1	chr4	56737399	+	XKR3	chr22	17288973	-
Frame-shit	ENST00000371253	ENST00000541110		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371253	ENST00000372917		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371253	ENST00000372922		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371253	ENST00000340840		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371253	ENST00000354325		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
5UTR-3CDS	ENST00000449332	ENST00000541110		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
5UTR-3CDS	ENST00000449332	ENST00000372917		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
5UTR-3CDS	ENST00000449332	ENST00000372922		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
5UTR-3CDS	ENST00000449332	ENST00000340840		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
5UTR-3CDS	ENST00000449332	ENST00000354325		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
intron-3CDS	ENST00000283297	ENST00000541110		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
intron-3CDS	ENST00000283297	ENST00000372917		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
intron-3CDS	ENST00000283297	ENST00000372922		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
intron-3CDS	ENST00000283297	ENST00000340840		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
intron-3CDS	ENST00000283297	ENST00000354325		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371243	ENST00000541110		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371243	ENST00000372917		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371243	ENST00000372922		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371243	ENST00000340840		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000371243	ENST00000354325		TCGA	RV	OV	TCGA-13-1505-01A	GPR110	chr6	46993590	-	TRERF1	chr6	42204149	-
Frame-shit	ENST00000394997	ENST00000332981		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
5CDS-5UTR	ENST00000394997	ENST00000555082		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
5CDS-intron	ENST00000394997	ENST00000556245		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
Frame-shit	ENST00000337138	ENST00000332981		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
5CDS-5UTR	ENST00000337138	ENST00000555082		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
5CDS-intron	ENST00000337138	ENST00000556245		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
Frame-shit	ENST00000323441	ENST00000332981		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
5CDS-5UTR	ENST00000323441	ENST00000555082		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
5CDS-intron	ENST00000323441	ENST00000556245		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-3CDS	ENST00000557538	ENST00000332981		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-5UTR	ENST00000557538	ENST00000555082		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-intron	ENST00000557538	ENST00000556245		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-3CDS	ENST00000539097	ENST00000332981		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-5UTR	ENST00000539097	ENST00000555082		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-intron	ENST00000539097	ENST00000556245		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-3CDS	ENST00000557206	ENST00000332981		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-5UTR	ENST00000557206	ENST00000555082		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
intron-intron	ENST00000557206	ENST00000556245		TCGA	RV	OV	TCGA-20-0987-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61909829	+
Frame-shit	ENST00000406875	ENST00000275884		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000406875	ENST00000537639		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000406875	ENST00000496613		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000406875	ENST00000492720		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000428878	ENST00000275884		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000428878	ENST00000537639		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000428878	ENST00000496613		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000428878	ENST00000492720		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
intron-3CDS	ENST00000342645	ENST00000275884		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
intron-3CDS	ENST00000342645	ENST00000537639		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
intron-3CDS	ENST00000342645	ENST00000496613		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
intron-3CDS	ENST00000342645	ENST00000492720		TCGA	RV	OV	TCGA-24-1546-01A	HIPK2	chr7	139477404	-	DENND2A	chr7	140287580	-
Frame-shit	ENST00000397668	ENST00000251472		TCGA	RV	OV	TCGA-09-1668-01B	HOOK2	chr19	12881746	-	MAST1	chr19	12958662	+
Frame-shit	ENST00000397668	ENST00000591495		TCGA	RV	OV	TCGA-09-1668-01B	HOOK2	chr19	12881746	-	MAST1	chr19	12958662	+
Frame-shit	ENST00000264827	ENST00000251472		TCGA	RV	OV	TCGA-09-1668-01B	HOOK2	chr19	12881746	-	MAST1	chr19	12958662	+
Frame-shit	ENST00000264827	ENST00000591495		TCGA	RV	OV	TCGA-09-1668-01B	HOOK2	chr19	12881746	-	MAST1	chr19	12958662	+
intron-3CDS	ENST00000589965	ENST00000251472		TCGA	RV	OV	TCGA-09-1668-01B	HOOK2	chr19	12881746	-	MAST1	chr19	12958662	+
intron-3CDS	ENST00000589965	ENST00000591495		TCGA	RV	OV	TCGA-09-1668-01B	HOOK2	chr19	12881746	-	MAST1	chr19	12958662	+
In-frame	ENST00000534064	ENST00000281038		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
In-frame	ENST00000534064	ENST00000528850		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000535943	ENST00000281038		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000535943	ENST00000528850		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000525931	ENST00000281038		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000525931	ENST00000528850		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
In-frame	ENST00000529807	ENST00000281038		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
In-frame	ENST00000529807	ENST00000528850		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000527522	ENST00000281038		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
intron-3CDS	ENST00000527522	ENST00000528850		TCGA	RV	OV	TCGA-57-1993-01A	INTS4	chr11	77666988	-	NARS2	chr11	78177059	-
5UTR-5UTR	ENST00000342505	ENST00000367028		TCGA	RV	OV	TCGA-09-1667-01C	JAK1	chr1	65432016	-	HSD11B1	chr1	209878262	+
5UTR-5UTR	ENST00000342505	ENST00000261465		TCGA	RV	OV	TCGA-09-1667-01C	JAK1	chr1	65432016	-	HSD11B1	chr1	209878262	+
5UTR-5UTR	ENST00000342505	ENST00000367027		TCGA	RV	OV	TCGA-09-1667-01C	JAK1	chr1	65432016	-	HSD11B1	chr1	209878262	+
intron-5UTR	ENST00000465376	ENST00000367028		TCGA	RV	OV	TCGA-09-1667-01C	JAK1	chr1	65432016	-	HSD11B1	chr1	209878262	+
intron-5UTR	ENST00000465376	ENST00000261465		TCGA	RV	OV	TCGA-09-1667-01C	JAK1	chr1	65432016	-	HSD11B1	chr1	209878262	+
intron-5UTR	ENST00000465376	ENST00000367027		TCGA	RV	OV	TCGA-09-1667-01C	JAK1	chr1	65432016	-	HSD11B1	chr1	209878262	+
Frame-shit	ENST00000330915	ENST00000592540		TCGA	RV	OV	TCGA-36-1576-01A	KANK3	chr19	8399384	-	SPC24	chr19	11259914	-
Frame-shit	ENST00000593649	ENST00000592540		TCGA	RV	OV	TCGA-36-1576-01A	KANK3	chr19	8399384	-	SPC24	chr19	11259914	-
In-frame	ENST00000222249	ENST00000442725		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
In-frame	ENST00000222249	ENST00000252595		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
5CDS-5UTR	ENST00000222249	ENST00000598424		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
5CDS-intron	ENST00000222249	ENST00000598848		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
intron-3CDS	ENST00000594192	ENST00000442725		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
intron-3CDS	ENST00000594192	ENST00000252595		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
intron-5UTR	ENST00000594192	ENST00000598424		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
intron-intron	ENST00000594192	ENST00000598848		TCGA	RV	OV	TCGA-25-1329-01A	KCNN1	chr19	18100652	+	SLC27A1	chr19	17597372	+
5UTR-3CDS	ENST00000314256	ENST00000269346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-3CDS	ENST00000314256	ENST00000529107		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-intron	ENST00000314256	ENST00000534346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-intron	ENST00000314256	ENST00000441391		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-3CDS	ENST00000579208	ENST00000269346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-3CDS	ENST00000579208	ENST00000529107		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-intron	ENST00000579208	ENST00000534346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
5UTR-intron	ENST00000579208	ENST00000441391		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000375248	ENST00000269346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000375248	ENST00000529107		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-intron	ENST00000375248	ENST00000534346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-intron	ENST00000375248	ENST00000441391		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000583795	ENST00000269346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000583795	ENST00000529107		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-intron	ENST00000583795	ENST00000534346		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-intron	ENST00000583795	ENST00000441391		TCGA	RV	OV	TCGA-23-1122-01A	KIAA0195	chr17	73452832	+	TTYH2	chr17	72227027	+
intron-3CDS	ENST00000506491	ENST00000300006		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000506491	ENST00000566490		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000506491	ENST00000452191		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000506491	ENST00000561692		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000506491	ENST00000565913		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000508657	ENST00000300006		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000508657	ENST00000566490		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000508657	ENST00000452191		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000508657	ENST00000561692		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000508657	ENST00000565913		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
Frame-shit	ENST00000309755	ENST00000300006		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
Frame-shit	ENST00000309755	ENST00000566490		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
Frame-shit	ENST00000309755	ENST00000452191		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000309755	ENST00000561692		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000309755	ENST00000565913		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000506873	ENST00000300006		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000506873	ENST00000566490		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000506873	ENST00000452191		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000506873	ENST00000561692		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000506873	ENST00000565913		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000541417	ENST00000300006		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000541417	ENST00000566490		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-3CDS	ENST00000541417	ENST00000452191		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000541417	ENST00000561692		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
intron-intron	ENST00000541417	ENST00000565913		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
Frame-shit	ENST00000394937	ENST00000300006		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
Frame-shit	ENST00000394937	ENST00000566490		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
Frame-shit	ENST00000394937	ENST00000452191		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000394937	ENST00000561692		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
5CDS-intron	ENST00000394937	ENST00000565913		TCGA	RV	OV	TCGA-13-0924-01A	KLHL3	chr5	137071322	-	C16orf45	chr16	15609162	+
In-frame	ENST00000369617	ENST00000328194		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000369617	ENST00000530044		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000369617	ENST00000527700		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
5CDS-intron	ENST00000369617	ENST00000526523		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
In-frame	ENST00000307546	ENST00000328194		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000307546	ENST00000530044		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000307546	ENST00000527700		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
5CDS-intron	ENST00000307546	ENST00000526523		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
In-frame	ENST00000369615	ENST00000328194		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000369615	ENST00000530044		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000369615	ENST00000527700		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
5CDS-intron	ENST00000369615	ENST00000526523		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
In-frame	ENST00000369611	ENST00000328194		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000369611	ENST00000530044		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
Frame-shit	ENST00000369611	ENST00000527700		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
5CDS-intron	ENST00000369611	ENST00000526523		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
3UTR-3CDS	ENST00000486456	ENST00000328194		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
3UTR-3CDS	ENST00000486456	ENST00000530044		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
3UTR-3CDS	ENST00000486456	ENST00000527700		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
3UTR-intron	ENST00000486456	ENST00000526523		TCGA	RV	OV	TCGA-24-1549-01A	MAGI3	chr1	113933971	+	DENND5A	chr11	9161401	-
In-frame	ENST00000264444	ENST00000303714		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
In-frame	ENST00000264444	ENST00000409829		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
In-frame	ENST00000264444	ENST00000409349		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
intron-3CDS	ENST00000540449	ENST00000303714		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
intron-3CDS	ENST00000540449	ENST00000409829		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
intron-3CDS	ENST00000540449	ENST00000409349		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
intron-3CDS	ENST00000465446	ENST00000303714		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
intron-3CDS	ENST00000465446	ENST00000409829		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
intron-3CDS	ENST00000465446	ENST00000409349		TCGA	RV	OV	TCGA-24-2023-01A	MXD1	chr2	70148897	+	ANTXR1	chr2	69267176	+
5CDS-5UTR	ENST00000356175	ENST00000309983		TCGA	RV	OV	TCGA-13-0714-01A	NF1	chr17	29422387	+	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000358273	ENST00000309983		TCGA	RV	OV	TCGA-13-0714-01A	NF1	chr17	29422387	+	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000431387	ENST00000309983		TCGA	RV	OV	TCGA-13-0714-01A	NF1	chr17	29422387	+	TPMT	chr6	18149402	-
intron-5UTR	ENST00000581113	ENST00000309983		TCGA	RV	OV	TCGA-13-0714-01A	NF1	chr17	29422387	+	TPMT	chr6	18149402	-
intron-5UTR	ENST00000417592	ENST00000309983		TCGA	RV	OV	TCGA-13-0714-01A	NF1	chr17	29422387	+	TPMT	chr6	18149402	-
intron-5UTR	ENST00000444181	ENST00000309983		TCGA	RV	OV	TCGA-13-0714-01A	NF1	chr17	29422387	+	TPMT	chr6	18149402	-
In-frame	ENST00000287437	ENST00000342287		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000287437	ENST00000373487		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000287437	ENST00000373489		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-intron	ENST00000287437	ENST00000373483		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-intron	ENST00000287437	ENST00000447726		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-3UTR	ENST00000287437	ENST00000538998		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000522563	ENST00000342287		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000522563	ENST00000373487		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000522563	ENST00000373489		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-intron	ENST00000522563	ENST00000373483		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-intron	ENST00000522563	ENST00000447726		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-3UTR	ENST00000522563	ENST00000538998		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000517315	ENST00000342287		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000517315	ENST00000373487		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000517315	ENST00000373489		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-intron	ENST00000517315	ENST00000373483		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-intron	ENST00000517315	ENST00000447726		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
5CDS-3UTR	ENST00000517315	ENST00000538998		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
intron-3CDS	ENST00000521460	ENST00000342287		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
intron-3CDS	ENST00000521460	ENST00000373487		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
intron-3CDS	ENST00000521460	ENST00000373489		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
intron-intron	ENST00000521460	ENST00000373483		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
intron-intron	ENST00000521460	ENST00000447726		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
intron-3UTR	ENST00000521460	ENST00000538998		TCGA	RV	OV	TCGA-24-1567-01A	NSMCE2	chr8	126194498	+	PBX3	chr9	128677965	+
In-frame	ENST00000369904	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000369904	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
Frame-shit	ENST00000409267	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000409267	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
In-frame	ENST00000369907	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000369907	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
In-frame	ENST00000438534	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000438534	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
Frame-shit	ENST00000369909	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000369909	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
Frame-shit	ENST00000409138	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000409138	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
Frame-shit	ENST00000369903	ENST00000357155		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000369903	ENST00000477962		TCGA	RV	OV	TCGA-13-1488-01A	PSRC1	chr1	109825302	-	MYBPHL	chr1	109840879	-
In-frame	ENST00000267163	ENST00000360473		TCGA	RV	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50594350	+
In-frame	ENST00000267163	ENST00000312942		TCGA	RV	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000484879	ENST00000360473		TCGA	RV	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000484879	ENST00000312942		TCGA	RV	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50594350	+
In-frame	ENST00000372771	ENST00000372811		TCGA	RV	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40424373	+
5CDS-intron	ENST00000372771	ENST00000420632		TCGA	RV	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40424373	+
5CDS-intron	ENST00000372771	ENST00000372809		TCGA	RV	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40424373	+
5CDS-intron	ENST00000372771	ENST00000480630		TCGA	RV	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40424373	+
5CDS-5UTR	ENST00000308488	ENST00000340067		TCGA	RV	OV	TCGA-20-1684-01A	RSF1	chr11	77531574	-	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000360355	ENST00000340067		TCGA	RV	OV	TCGA-20-1684-01A	RSF1	chr11	77531574	-	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000480887	ENST00000340067		TCGA	RV	OV	TCGA-20-1684-01A	RSF1	chr11	77531574	-	KCTD21	chr11	77885629	-
5UTR-5UTR	ENST00000530604	ENST00000340067		TCGA	RV	OV	TCGA-20-1684-01A	RSF1	chr11	77531574	-	KCTD21	chr11	77885629	-
Frame-shit	ENST00000262013	ENST00000586178		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000262013	ENST00000415868		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000262013	ENST00000376381		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000262013	ENST00000593259		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000505279	ENST00000586178		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000505279	ENST00000415868		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000505279	ENST00000376381		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000505279	ENST00000593259		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000357122	ENST00000586178		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000357122	ENST00000415868		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000357122	ENST00000376381		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000357122	ENST00000593259		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000509724	ENST00000586178		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000509724	ENST00000415868		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000509724	ENST00000376381		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000509724	ENST00000593259		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000510283	ENST00000586178		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000510283	ENST00000415868		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000510283	ENST00000376381		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000510283	ENST00000593259		TCGA	RV	OV	TCGA-24-1557-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
In-frame	ENST00000321582	ENST00000335613		TCGA	RV	OV	TCGA-25-1313-01A	TTLL11	chr9	124801551	-	VWCE	chr11	61050377	-
5CDS-intron	ENST00000321582	ENST00000535710		TCGA	RV	OV	TCGA-25-1313-01A	TTLL11	chr9	124801551	-	VWCE	chr11	61050377	-
5UTR-3CDS	ENST00000474723	ENST00000335613		TCGA	RV	OV	TCGA-25-1313-01A	TTLL11	chr9	124801551	-	VWCE	chr11	61050377	-
5UTR-intron	ENST00000474723	ENST00000535710		TCGA	RV	OV	TCGA-25-1313-01A	TTLL11	chr9	124801551	-	VWCE	chr11	61050377	-
In-frame	ENST00000373776	ENST00000335613		TCGA	RV	OV	TCGA-25-1313-01A	TTLL11	chr9	124801551	-	VWCE	chr11	61050377	-
5CDS-intron	ENST00000373776	ENST00000535710		TCGA	RV	OV	TCGA-25-1313-01A	TTLL11	chr9	124801551	-	VWCE	chr11	61050377	-
5CDS-5UTR	ENST00000317025	ENST00000256261		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
5CDS-5UTR	ENST00000317025	ENST00000523956		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
5CDS-5UTR	ENST00000433384	ENST00000256261		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
5CDS-5UTR	ENST00000433384	ENST00000523956		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
5CDS-5UTR	ENST00000527502	ENST00000256261		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
5CDS-5UTR	ENST00000527502	ENST00000523956		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
intron-5UTR	ENST00000316985	ENST00000256261		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
intron-5UTR	ENST00000316985	ENST00000523956		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
intron-5UTR	ENST00000525081	ENST00000256261		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
intron-5UTR	ENST00000525081	ENST00000523956		TCGA	RV	OV	TCGA-24-1604-01A	WHSC1L1	chr8	38162105	-	DUSP26	chr8	33455109	-
5UTR-5UTR	ENST00000446856	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000446856	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000446856	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000446856	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000446856	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000446856	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000446856	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-intron	ENST00000446856	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000264758	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-intron	ENST00000264758	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000398125	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-intron	ENST00000398125	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000513328	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-intron	ENST00000513328	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-5UTR	ENST00000503455	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
5UTR-intron	ENST00000503455	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000355842	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-intron	ENST00000355842	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398123	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-intron	ENST00000398123	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000398129	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-intron	ENST00000398129	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000389838		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000452765		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000442312		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000435136		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000511747		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000503393		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-5UTR	ENST00000538860	ENST00000356331		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
intron-intron	ENST00000538860	ENST00000515183		TCGA	RV	OV	TCGA-04-1356-01A	ADD1	chr4	2845751	+	SH3BP2	chr4	2822341	+
In-frame	ENST00000409134	ENST00000291009		TCGA	RV	OV	TCGA-20-1682-01A	ALDH7A1	chr5	125911112	-	PIP	chr7	142832287	+
In-frame	ENST00000447989	ENST00000291009		TCGA	RV	OV	TCGA-20-1682-01A	ALDH7A1	chr5	125911112	-	PIP	chr7	142832287	+
In-frame	ENST00000553117	ENST00000291009		TCGA	RV	OV	TCGA-20-1682-01A	ALDH7A1	chr5	125911112	-	PIP	chr7	142832287	+
5UTR-3CDS	ENST00000413020	ENST00000291009		TCGA	RV	OV	TCGA-20-1682-01A	ALDH7A1	chr5	125911112	-	PIP	chr7	142832287	+
5CDS-intron	ENST00000368346	ENST00000486478		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000368346	ENST00000450089		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000368346	ENST00000371201		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000368346	ENST00000395552		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000392403	ENST00000486478		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000392403	ENST00000450089		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000392403	ENST00000371201		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
5CDS-intron	ENST00000392403	ENST00000395552		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
intron-intron	ENST00000548830	ENST00000486478		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
intron-intron	ENST00000548830	ENST00000450089		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
intron-intron	ENST00000548830	ENST00000371201		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
intron-intron	ENST00000548830	ENST00000395552		TCGA	RV	OV	TCGA-24-1553-01A	ASH1L	chr1	155349834	-	C1orf87	chr1	60521110	-
intron-3CDS	ENST00000464527	ENST00000389048		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
intron-intron	ENST00000464527	ENST00000431873		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
intron-intron	ENST00000464527	ENST00000498037		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
Frame-shit	ENST00000445927	ENST00000389048		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
5CDS-intron	ENST00000445927	ENST00000431873		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
5CDS-intron	ENST00000445927	ENST00000498037		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
intron-3CDS	ENST00000294947	ENST00000389048		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
intron-intron	ENST00000294947	ENST00000431873		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
intron-intron	ENST00000294947	ENST00000498037		TCGA	RV	OV	TCGA-23-1027-01A	C2orf61	chr2	47357080	-	ALK	chr2	29754982	-
In-frame	ENST00000361246	ENST00000256366		TCGA	RV	OV	TCGA-04-1365-01A	CDC42BPB	chr14	103414058	-	SYNJ2BP	chr14	70842488	-
5CDS-5UTR	ENST00000361246	ENST00000554216		TCGA	RV	OV	TCGA-04-1365-01A	CDC42BPB	chr14	103414058	-	SYNJ2BP	chr14	70842488	-
Frame-shit	ENST00000430627	ENST00000544865		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000430627	ENST00000263073		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000430627	ENST00000354901		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000430627	ENST00000536871		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
5CDS-5UTR	ENST00000430627	ENST00000573166		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000447079	ENST00000544865		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000447079	ENST00000263073		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000447079	ENST00000354901		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000447079	ENST00000536871		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
5CDS-5UTR	ENST00000447079	ENST00000573166		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
intron-3CDS	ENST00000559545	ENST00000544865		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
intron-3CDS	ENST00000559545	ENST00000263073		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
intron-3CDS	ENST00000559545	ENST00000354901		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
intron-3CDS	ENST00000559545	ENST00000536871		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
intron-5UTR	ENST00000559545	ENST00000573166		TCGA	RV	OV	TCGA-09-1673-01A	CDK12	chr17	37657692	+	SMG6	chr17	1985250	-
Frame-shit	ENST00000438015	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000438015	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000427383	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000427383	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000428830	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000428830	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
3UTR-3CDS	ENST00000532449	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
3UTR-3CDS	ENST00000532449	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000544373	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000544373	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000534070	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000534070	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000524737	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000524737	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000278916	ENST00000371547		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000278916	ENST00000371552		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000371543		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000443748		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000260762		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000497262		TCGA	RV	OV	TCGA-09-1665-01B	CHEK1	chr11	125505428	+	EXOC6	chr10	94757231	+
5UTR-3CDS	ENST00000317147	ENST00000200676		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000317147	ENST00000379780		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000317147	ENST00000566128		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3UTR	ENST00000317147	ENST00000569082		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000569240	ENST00000200676		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000569240	ENST00000379780		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000569240	ENST00000566128		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3UTR	ENST00000569240	ENST00000569082		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000441024	ENST00000200676		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000441024	ENST00000379780		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3CDS	ENST00000441024	ENST00000566128		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
5UTR-3UTR	ENST00000441024	ENST00000569082		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000569732	ENST00000200676		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000569732	ENST00000379780		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000569732	ENST00000566128		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3UTR	ENST00000569732	ENST00000569082		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000245138	ENST00000200676		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000245138	ENST00000379780		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000245138	ENST00000566128		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3UTR	ENST00000245138	ENST00000569082		TCGA	RV	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	CETP	chr16	57003298	+
intron-3CDS	ENST00000359867	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000359867	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3UTR	ENST00000359867	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000396832	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000396832	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3UTR	ENST00000396832	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
5UTR-3CDS	ENST00000400206	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
5UTR-3CDS	ENST00000400206	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
5UTR-3UTR	ENST00000400206	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000403904	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000403904	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3UTR	ENST00000403904	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000413574	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000413574	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3UTR	ENST00000413574	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000405675	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000405675	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3UTR	ENST00000405675	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000498529	ENST00000216014		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3CDS	ENST00000498529	ENST00000409006		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-3UTR	ENST00000498529	ENST00000471268		TCGA	RV	OV	TCGA-36-1574-01A	CSNK1E	chr22	38776375	-	KDELR3	chr22	38870528	+
intron-5UTR	ENST00000409469	ENST00000274813		TCGA	RV	OV	TCGA-23-1122-01A	CUL1	chr7	148396121	+	MUT	chr6	49427218	-
intron-5UTR	ENST00000602748	ENST00000274813		TCGA	RV	OV	TCGA-23-1122-01A	CUL1	chr7	148396121	+	MUT	chr6	49427218	-
5UTR-5UTR	ENST00000325222	ENST00000274813		TCGA	RV	OV	TCGA-23-1122-01A	CUL1	chr7	148396121	+	MUT	chr6	49427218	-
5CDS-intron	ENST00000434748	ENST00000535228		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000434748	ENST00000328957		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000434748	ENST00000397325		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000434748	ENST00000541995		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000434748	ENST00000535208		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000261673	ENST00000535228		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000261673	ENST00000328957		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000261673	ENST00000397325		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000261673	ENST00000541995		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000261673	ENST00000535208		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
intron-intron	ENST00000542061	ENST00000535228		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
intron-intron	ENST00000542061	ENST00000328957		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
intron-intron	ENST00000542061	ENST00000397325		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
intron-intron	ENST00000542061	ENST00000541995		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
intron-intron	ENST00000542061	ENST00000535208		TCGA	RV	OV	TCGA-61-2102-01A	FBRSL1	chr12	133067447	+	GALNT9	chr12	132863016	-
Frame-shit	ENST00000290573	ENST00000382349		TCGA	RV	OV	TCGA-09-1662-01A	HK2	chr2	75101576	+	ONECUT3	chr19	1775152	+
Frame-shit	ENST00000409174	ENST00000382349		TCGA	RV	OV	TCGA-09-1662-01A	HK2	chr2	75101576	+	ONECUT3	chr19	1775152	+
5CDS-5UTR	ENST00000368094	ENST00000466773		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
5CDS-5UTR	ENST00000368094	ENST00000368092		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
5CDS-5UTR	ENST00000368094	ENST00000368093		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
5CDS-5UTR	ENST00000361509	ENST00000466773		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
5CDS-5UTR	ENST00000361509	ENST00000368092		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
5CDS-5UTR	ENST00000361509	ENST00000368093		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
intron-5UTR	ENST00000493195	ENST00000466773		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
intron-5UTR	ENST00000493195	ENST00000368092		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
intron-5UTR	ENST00000493195	ENST00000368093		TCGA	RV	OV	TCGA-13-1497-01A	IGSF9	chr1	159912753	-	SLAMF9	chr1	159921656	-
Frame-shit	ENST00000316485	ENST00000371191		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000316485	ENST00000407417		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000479364		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371189		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000403491		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371187		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000485903		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371185		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371184		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000357977		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000371158	ENST00000371191		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000371158	ENST00000407417		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000479364		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371189		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000403491		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371187		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000485903		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371185		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371184		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000357977		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000543708	ENST00000371191		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000543708	ENST00000407417		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000479364		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371189		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000403491		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371187		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000485903		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371185		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371184		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000357977		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000545929	ENST00000371191		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000545929	ENST00000407417		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000479364		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371189		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000403491		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371187		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000485903		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371185		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371184		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000357977		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000472512	ENST00000371191		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000472512	ENST00000407417		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000479364		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371189		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000403491		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371187		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000485903		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371185		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371184		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000357977		TCGA	RV	OV	TCGA-09-1667-01C	INADL	chr1	62241006	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000368594	ENST00000358621		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-5UTR	ENST00000368594	ENST00000357447		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368594	ENST00000378503		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368594	ENST00000342409		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-5UTR	ENST00000368594	ENST00000493380		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-5UTR	ENST00000368594	ENST00000475141		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368594	ENST00000492155		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368593	ENST00000358621		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-5UTR	ENST00000368593	ENST00000357447		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368593	ENST00000378503		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368593	ENST00000342409		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-5UTR	ENST00000368593	ENST00000493380		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-5UTR	ENST00000368593	ENST00000475141		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
5CDS-intron	ENST00000368593	ENST00000492155		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-intron	ENST00000487614	ENST00000358621		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-5UTR	ENST00000487614	ENST00000357447		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-intron	ENST00000487614	ENST00000378503		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-intron	ENST00000487614	ENST00000342409		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-5UTR	ENST00000487614	ENST00000493380		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-5UTR	ENST00000487614	ENST00000475141		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
intron-intron	ENST00000487614	ENST00000492155		TCGA	RV	OV	TCGA-04-1362-01A	INPP5A	chr10	134351675	+	FRMD4A	chr10	14372182	-
In-frame	ENST00000448637	ENST00000490131		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000448637	ENST00000498619		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000448637	ENST00000296154		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000312675	ENST00000490131		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000312675	ENST00000498619		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000312675	ENST00000296154		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000543006	ENST00000490131		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000543006	ENST00000498619		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000543006	ENST00000296154		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
intron-3CDS	ENST00000471917	ENST00000490131		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
intron-3CDS	ENST00000471917	ENST00000498619		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
intron-3CDS	ENST00000471917	ENST00000296154		TCGA	RV	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121980375	+
In-frame	ENST00000281081	ENST00000256935		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
In-frame	ENST00000281081	ENST00000540750		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
In-frame	ENST00000281081	ENST00000520908		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
5CDS-3UTR	ENST00000281081	ENST00000523351		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
In-frame	ENST00000536705	ENST00000256935		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
In-frame	ENST00000536705	ENST00000540750		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
In-frame	ENST00000536705	ENST00000520908		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
5CDS-3UTR	ENST00000536705	ENST00000523351		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
intron-3CDS	ENST00000418681	ENST00000256935		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
intron-3CDS	ENST00000418681	ENST00000540750		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
intron-3CDS	ENST00000418681	ENST00000520908		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
intron-3UTR	ENST00000418681	ENST00000523351		TCGA	RV	OV	TCGA-24-1557-01A	NUBPL	chr14	32142780	+	DOCK2	chr5	169435501	+
In-frame	ENST00000394249	ENST00000333371		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-5UTR	ENST00000394249	ENST00000535843		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000394249	ENST00000535906		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000394249	ENST00000557358		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
In-frame	ENST00000361919	ENST00000333371		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-5UTR	ENST00000361919	ENST00000535843		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000361919	ENST00000535906		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000361919	ENST00000557358		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
In-frame	ENST00000361188	ENST00000333371		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-5UTR	ENST00000361188	ENST00000535843		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000361188	ENST00000535906		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000361188	ENST00000557358		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
In-frame	ENST00000442656	ENST00000333371		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-5UTR	ENST00000442656	ENST00000535843		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000442656	ENST00000535906		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-intron	ENST00000442656	ENST00000557358		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5UTR-3CDS	ENST00000556129	ENST00000333371		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5UTR-5UTR	ENST00000556129	ENST00000535843		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5UTR-intron	ENST00000556129	ENST00000535906		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5UTR-intron	ENST00000556129	ENST00000557358		TCGA	RV	OV	TCGA-25-2397-01A	PRC1	chr15	91527923	-	VPS33B	chr15	91561115	-
5CDS-5UTR	ENST00000356151	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000356151	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000356151	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000356151	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000356151	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000302779	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000302779	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000302779	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000302779	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000302779	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000383716	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000383716	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000383716	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000383716	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000383716	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000463280	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000463280	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000463280	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000463280	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000463280	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000383715	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000383715	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000383715	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000383715	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000383715	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000484288	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000484288	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000484288	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000484288	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000484288	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000479241	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000479241	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000479241	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-5UTR	ENST00000479241	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5CDS-intron	ENST00000479241	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5UTR-5UTR	ENST00000536660	ENST00000445193		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5UTR-intron	ENST00000536660	ENST00000477305		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5UTR-5UTR	ENST00000536660	ENST00000295959		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5UTR-5UTR	ENST00000536660	ENST00000466547		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
5UTR-intron	ENST00000536660	ENST00000528153		TCGA	RV	OV	TCGA-13-0893-01B	PXK	chr3	58318817	+	RPP14	chr3	58296036	+
Frame-shit	ENST00000372851	ENST00000225737		TCGA	RV	OV	TCGA-09-1667-01C	RIMS4	chr20	43438816	-	AKAP10	chr17	19871774	-
Frame-shit	ENST00000372851	ENST00000395536		TCGA	RV	OV	TCGA-09-1667-01C	RIMS4	chr20	43438816	-	AKAP10	chr17	19871774	-
5CDS-5UTR	ENST00000372851	ENST00000572155		TCGA	RV	OV	TCGA-09-1667-01C	RIMS4	chr20	43438816	-	AKAP10	chr17	19871774	-
Frame-shit	ENST00000541604	ENST00000225737		TCGA	RV	OV	TCGA-09-1667-01C	RIMS4	chr20	43438816	-	AKAP10	chr17	19871774	-
Frame-shit	ENST00000541604	ENST00000395536		TCGA	RV	OV	TCGA-09-1667-01C	RIMS4	chr20	43438816	-	AKAP10	chr17	19871774	-
5CDS-5UTR	ENST00000541604	ENST00000572155		TCGA	RV	OV	TCGA-09-1667-01C	RIMS4	chr20	43438816	-	AKAP10	chr17	19871774	-
In-frame	ENST00000521198	ENST00000276570		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
5CDS-3UTR	ENST00000521198	ENST00000519330		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
In-frame	ENST00000522398	ENST00000276570		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
5CDS-3UTR	ENST00000522398	ENST00000519330		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
In-frame	ENST00000520976	ENST00000276570		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
5CDS-3UTR	ENST00000520976	ENST00000519330		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
In-frame	ENST00000396596	ENST00000276570		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
5CDS-3UTR	ENST00000396596	ENST00000519330		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
In-frame	ENST00000345714	ENST00000276570		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
5CDS-3UTR	ENST00000345714	ENST00000519330		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
intron-3CDS	ENST00000521435	ENST00000276570		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
intron-3UTR	ENST00000521435	ENST00000519330		TCGA	RV	OV	TCGA-24-1548-01A	SGK3	chr8	67710860	+	DNAJC5B	chr8	66992612	+
In-frame	ENST00000230640	ENST00000003302		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000230640	ENST00000260188		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000230640	ENST00000544967		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000230640	ENST00000545540		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
5CDS-intron	ENST00000230640	ENST00000537706		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
5CDS-intron	ENST00000230640	ENST00000542033		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000545714	ENST00000003302		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000545714	ENST00000260188		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000545714	ENST00000544967		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
In-frame	ENST00000545714	ENST00000545540		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
5CDS-intron	ENST00000545714	ENST00000537706		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
5CDS-intron	ENST00000545714	ENST00000542033		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
intron-3CDS	ENST00000504388	ENST00000003302		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
intron-3CDS	ENST00000504388	ENST00000260188		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
intron-3CDS	ENST00000504388	ENST00000544967		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
intron-3CDS	ENST00000504388	ENST00000545540		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
intron-intron	ENST00000504388	ENST00000537706		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
intron-intron	ENST00000504388	ENST00000542033		TCGA	RV	OV	TCGA-13-0893-01B	SKIV2L2	chr5	54662703	+	USP28	chr11	113679976	-
5CDS-intron	ENST00000375759	ENST00000428417		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375759	ENST00000376014		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000375759	ENST00000400796		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375759	ENST00000434578		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000375759	ENST00000376008		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
3UTR-intron	ENST00000471538	ENST00000428417		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
3UTR-5UTR	ENST00000471538	ENST00000376014		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
3UTR-intron	ENST00000471538	ENST00000400796		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
3UTR-5UTR	ENST00000471538	ENST00000434578		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
3UTR-5UTR	ENST00000471538	ENST00000376008		TCGA	RV	OV	TCGA-61-2104-01A	SPEN	chr1	16203173	+	TMEM51	chr1	15536986	+
intron-3CDS	ENST00000393328	ENST00000240364		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000393328	ENST00000513602		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000393328	ENST00000514018		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
5UTR-3CDS	ENST00000393331	ENST00000240364		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
5UTR-5UTR	ENST00000393331	ENST00000513602		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
5UTR-5UTR	ENST00000393331	ENST00000514018		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-3CDS	ENST00000347630	ENST00000240364		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000347630	ENST00000513602		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000347630	ENST00000514018		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-3CDS	ENST00000504102	ENST00000240364		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000504102	ENST00000513602		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000504102	ENST00000514018		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-3CDS	ENST00000503676	ENST00000240364		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000503676	ENST00000513602		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000503676	ENST00000514018		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-3CDS	ENST00000513080	ENST00000240364		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000513080	ENST00000513602		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
intron-5UTR	ENST00000513080	ENST00000514018		TCGA	RV	OV	TCGA-13-A5FT-01A	SPOP	chr17	47745389	-	FAM117A	chr17	47810082	-
Frame-shit	ENST00000243644	ENST00000454036		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5CDS-intron	ENST00000243644	ENST00000413737		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5CDS-intron	ENST00000243644	ENST00000608944		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5CDS-intron	ENST00000243644	ENST00000372315		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5CDS-intron	ENST00000243644	ENST00000243964		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5UTR-3CDS	ENST00000600703	ENST00000454036		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5UTR-intron	ENST00000600703	ENST00000413737		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5UTR-intron	ENST00000600703	ENST00000608944		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5UTR-intron	ENST00000600703	ENST00000372315		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
5UTR-intron	ENST00000600703	ENST00000243964		TCGA	RV	OV	TCGA-23-1024-01A	ZNF350	chr19	52477599	-	SLC12A5	chr20	44669012	+
intron-3CDS	ENST00000397732	ENST00000607517		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
intron-3CDS	ENST00000397732	ENST00000378012		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
intron-3CDS	ENST00000397732	ENST00000378009		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
intron-3CDS	ENST00000428311	ENST00000607517		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
intron-3CDS	ENST00000428311	ENST00000378012		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
intron-3CDS	ENST00000428311	ENST00000378009		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
5UTR-3CDS	ENST00000493776	ENST00000607517		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
5UTR-3CDS	ENST00000493776	ENST00000378012		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
5UTR-3CDS	ENST00000493776	ENST00000378009		TCGA	RV	OV	TCGA-24-1558-01A	ZNF709	chr19	12624558	-	CD177	chr19	43858359	+
5CDS-intron	ENST00000294016	ENST00000382668		TCGA	RV	OV	TCGA-29-A5NZ-01A	ADCY9	chr16	4163751	-	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000294016	ENST00000382666		TCGA	RV	OV	TCGA-29-A5NZ-01A	ADCY9	chr16	4163751	-	FAHD1	chr16	1888017	+
5CDS-intron	ENST00000294016	ENST00000427358		TCGA	RV	OV	TCGA-29-A5NZ-01A	ADCY9	chr16	4163751	-	FAHD1	chr16	1888017	+
intron-intron	ENST00000571889	ENST00000382668		TCGA	RV	OV	TCGA-29-A5NZ-01A	ADCY9	chr16	4163751	-	FAHD1	chr16	1888017	+
intron-intron	ENST00000571889	ENST00000382666		TCGA	RV	OV	TCGA-29-A5NZ-01A	ADCY9	chr16	4163751	-	FAHD1	chr16	1888017	+
intron-intron	ENST00000571889	ENST00000427358		TCGA	RV	OV	TCGA-29-A5NZ-01A	ADCY9	chr16	4163751	-	FAHD1	chr16	1888017	+
In-frame	ENST00000350026	ENST00000367255		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000350026	ENST00000356820		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000350026	ENST00000423061		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000350026	ENST00000448038		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000350026	ENST00000341594		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000350026	ENST00000265368		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000350026	ENST00000367253		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000350026	ENST00000367248		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000350026	ENST00000413186		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000350026	ENST00000466159		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000350026	ENST00000539504		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000350026	ENST00000347037		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000350026	ENST00000354674		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000350026	ENST00000495090		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000346085	ENST00000367255		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000346085	ENST00000356820		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000346085	ENST00000423061		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000346085	ENST00000448038		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000346085	ENST00000341594		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000346085	ENST00000265368		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000346085	ENST00000367253		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000346085	ENST00000367248		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000346085	ENST00000413186		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000346085	ENST00000466159		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000346085	ENST00000539504		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000346085	ENST00000347037		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000346085	ENST00000354674		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000346085	ENST00000495090		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000367148	ENST00000367255		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000367148	ENST00000356820		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000367148	ENST00000423061		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000367148	ENST00000448038		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000367148	ENST00000341594		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000367148	ENST00000265368		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000367148	ENST00000367253		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000367148	ENST00000367248		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000367148	ENST00000413186		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000367148	ENST00000466159		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000367148	ENST00000539504		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000367148	ENST00000347037		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000367148	ENST00000354674		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000367148	ENST00000495090		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000275248	ENST00000367255		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000275248	ENST00000356820		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000275248	ENST00000423061		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000275248	ENST00000448038		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000275248	ENST00000341594		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
In-frame	ENST00000275248	ENST00000265368		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000275248	ENST00000367253		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000275248	ENST00000367248		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000275248	ENST00000413186		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000275248	ENST00000466159		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000275248	ENST00000539504		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000275248	ENST00000347037		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-5UTR	ENST00000275248	ENST00000354674		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-intron	ENST00000275248	ENST00000495090		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-3CDS	ENST00000478761	ENST00000367255		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-3CDS	ENST00000478761	ENST00000356820		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-3CDS	ENST00000478761	ENST00000423061		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-3CDS	ENST00000478761	ENST00000448038		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-3CDS	ENST00000478761	ENST00000341594		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-3CDS	ENST00000478761	ENST00000265368		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-intron	ENST00000478761	ENST00000367253		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-intron	ENST00000478761	ENST00000367248		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-intron	ENST00000478761	ENST00000413186		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-intron	ENST00000478761	ENST00000466159		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-intron	ENST00000478761	ENST00000539504		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-5UTR	ENST00000478761	ENST00000347037		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-5UTR	ENST00000478761	ENST00000354674		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
intron-intron	ENST00000478761	ENST00000495090		TCGA	RV	OV	TCGA-13-0885-01A	ARID1B	chr6	157406039	+	SYNE1	chr6	152464900	-
5CDS-3UTR	ENST00000309469	ENST00000592666		TCGA	RV	OV	TCGA-13-1407-01A	ATG4D	chr19	10655001	+	UHRF1	chr19	4929234	+
intron-3UTR	ENST00000540862	ENST00000592666		TCGA	RV	OV	TCGA-13-1407-01A	ATG4D	chr19	10655001	+	UHRF1	chr19	4929234	+
Frame-shit	ENST00000381061	ENST00000348697		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000381061	ENST00000402984		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000381061	ENST00000262722		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000381061	ENST00000327858		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000381061	ENST00000442170		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000381061	ENST00000340923		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000381061	ENST00000476366		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
Frame-shit	ENST00000252934	ENST00000348697		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000252934	ENST00000402984		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000252934	ENST00000262722		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000252934	ENST00000327858		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000252934	ENST00000442170		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000252934	ENST00000340923		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000252934	ENST00000476366		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-3CDS	ENST00000498009	ENST00000348697		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-intron	ENST00000498009	ENST00000402984		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-intron	ENST00000498009	ENST00000262722		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-intron	ENST00000498009	ENST00000327858		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-intron	ENST00000498009	ENST00000442170		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-intron	ENST00000498009	ENST00000340923		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
3UTR-intron	ENST00000498009	ENST00000476366		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-3CDS	ENST00000402380	ENST00000348697		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-intron	ENST00000402380	ENST00000402984		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-intron	ENST00000402380	ENST00000262722		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-intron	ENST00000402380	ENST00000327858		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-intron	ENST00000402380	ENST00000442170		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-intron	ENST00000402380	ENST00000340923		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
intron-intron	ENST00000402380	ENST00000476366		TCGA	RV	OV	TCGA-13-0795-01A	ATXN10	chr22	46088958	+	FBLN1	chr22	45996187	+
In-frame	ENST00000406775	ENST00000369230		TCGA	RV	OV	TCGA-13-0916-01A	AUTS2	chr7	69364484	+	PNLIPRP3	chr10	118215234	+
In-frame	ENST00000342771	ENST00000369230		TCGA	RV	OV	TCGA-13-0916-01A	AUTS2	chr7	69364484	+	PNLIPRP3	chr10	118215234	+
In-frame	ENST00000403018	ENST00000369230		TCGA	RV	OV	TCGA-13-0916-01A	AUTS2	chr7	69364484	+	PNLIPRP3	chr10	118215234	+
intron-3CDS	ENST00000489774	ENST00000369230		TCGA	RV	OV	TCGA-13-0916-01A	AUTS2	chr7	69364484	+	PNLIPRP3	chr10	118215234	+
5CDS-intron	ENST00000271277	ENST00000378654		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
5CDS-intron	ENST00000271277	ENST00000544100		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
5CDS-intron	ENST00000271277	ENST00000534875		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
5CDS-5UTR	ENST00000271277	ENST00000543413		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
5CDS-intron	ENST00000271277	ENST00000497202		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
intron-intron	ENST00000607039	ENST00000378654		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
intron-intron	ENST00000607039	ENST00000544100		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
intron-intron	ENST00000607039	ENST00000534875		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
intron-5UTR	ENST00000607039	ENST00000543413		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
intron-intron	ENST00000607039	ENST00000497202		TCGA	RV	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48589384	-
intron-3CDS	ENST00000447054	ENST00000392499		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
intron-3CDS	ENST00000447054	ENST00000307944		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000265022	ENST00000392499		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000265022	ENST00000307944		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000344484	ENST00000392499		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000344484	ENST00000307944		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000382164	ENST00000392499		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000382164	ENST00000307944		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000544847	ENST00000392499		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5UTR-3CDS	ENST00000544847	ENST00000307944		TCGA	RV	OV	TCGA-13-0887-01A	DGKG	chr3	186079735	-	CRYGS	chr3	186257386	-
5CDS-5UTR	ENST00000343455	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000343455	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000343455	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000343455	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000343455	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000343455	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-5UTR	ENST00000526495	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000526495	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000526495	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000526495	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000526495	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000526495	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-5UTR	ENST00000393063	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000393063	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000393063	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000393063	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000393063	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000393063	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-5UTR	ENST00000527416	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000527416	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000527416	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000527416	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000527416	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000527416	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-5UTR	ENST00000527414	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000527414	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000527414	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000527414	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000527414	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000527414	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-5UTR	ENST00000556045	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000556045	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000556045	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000556045	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000556045	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
intron-intron	ENST00000556045	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-5UTR	ENST00000541352	ENST00000554335		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000541352	ENST00000251091		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000541352	ENST00000555112		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000541352	ENST00000392067		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000541352	ENST00000357634		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
5CDS-intron	ENST00000541352	ENST00000555192		TCGA	RV	OV	TCGA-29-A5NZ-01A	DICER1	chr14	95596395	-	SAMD4A	chr14	55034214	+
In-frame	ENST00000305188	ENST00000521400		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000305188	ENST00000517536		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000305188	ENST00000521780		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000305188	ENST00000380476		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000305188	ENST00000518379		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
5CDS-intron	ENST00000305188	ENST00000520666		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000397418	ENST00000521400		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000397418	ENST00000517536		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000397418	ENST00000521780		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000397418	ENST00000380476		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
In-frame	ENST00000397418	ENST00000518379		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
5CDS-intron	ENST00000397418	ENST00000520666		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
intron-3CDS	ENST00000523910	ENST00000521400		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
intron-3CDS	ENST00000523910	ENST00000517536		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
intron-3CDS	ENST00000523910	ENST00000521780		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
intron-3CDS	ENST00000523910	ENST00000380476		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
intron-3CDS	ENST00000523910	ENST00000518379		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
intron-intron	ENST00000523910	ENST00000520666		TCGA	RV	OV	TCGA-23-1027-01A	ESCO2	chr8	27646495	+	EPHX2	chr8	27394301	+
5CDS-intron	ENST00000370551	ENST00000375854		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000370551	ENST00000487646		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
5CDS-3UTR	ENST00000370551	ENST00000375855		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000370550	ENST00000375854		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000370550	ENST00000487646		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
5CDS-3UTR	ENST00000370550	ENST00000375855		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
intron-intron	ENST00000356813	ENST00000375854		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
intron-intron	ENST00000356813	ENST00000487646		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
intron-3UTR	ENST00000356813	ENST00000375855		TCGA	RV	OV	TCGA-09-1659-01B	HS2ST1	chr1	87380843	+	NXNL2	chr9	91190002	+
intron-3CDS	ENST00000264674	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000264674	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000264674	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000264674	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000264674	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000392736	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000392736	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000392736	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000392736	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000392736	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000464456	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000464456	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000464456	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000464456	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000464456	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000472280	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000472280	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000472280	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000472280	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000472280	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
In-frame	ENST00000494292	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
In-frame	ENST00000494292	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5CDS-5UTR	ENST00000494292	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5CDS-5UTR	ENST00000494292	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5CDS-5UTR	ENST00000494292	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000468789	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000468789	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000468789	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000468789	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000468789	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000460814	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000460814	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000460814	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000460814	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000460814	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000433243	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-3CDS	ENST00000433243	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000433243	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000433243	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
intron-5UTR	ENST00000433243	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5UTR-3CDS	ENST00000485957	ENST00000264963		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5UTR-3CDS	ENST00000485957	ENST00000377079		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5UTR-5UTR	ENST00000485957	ENST00000426463		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5UTR-5UTR	ENST00000485957	ENST00000537039		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
5UTR-5UTR	ENST00000485957	ENST00000534882		TCGA	RV	OV	TCGA-10-0934-01A	MECOM	chr3	169381124	-	LMAN2L	chr2	97400263	-
Frame-shit	ENST00000344191	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000344191	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000344191	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
Frame-shit	ENST00000351017	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000351017	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000351017	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
Frame-shit	ENST00000392108	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000392108	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000392108	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
Frame-shit	ENST00000392112	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000392112	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000392112	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
Frame-shit	ENST00000366806	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000366806	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000366806	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
Frame-shit	ENST00000447894	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000447894	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000447894	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
Frame-shit	ENST00000400822	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000400822	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5CDS-intron	ENST00000400822	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
intron-3CDS	ENST00000507679	ENST00000230256		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
intron-intron	ENST00000507679	ENST00000366830		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
intron-intron	ENST00000507679	ENST00000366829		TCGA	RV	OV	TCGA-13-1408-01A	MLLT4	chr6	168227917	+	UNC93A	chr6	167717407	+
5UTR-3CDS	ENST00000341724	ENST00000357410		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000341724	ENST00000327619		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000341724	ENST00000497428		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000341724	ENST00000317304		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000372004	ENST00000357410		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000372004	ENST00000327619		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000372004	ENST00000497428		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000372004	ENST00000317304		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000371998	ENST00000357410		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000371998	ENST00000327619		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000371998	ENST00000497428		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000371998	ENST00000317304		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000371997	ENST00000357410		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-3CDS	ENST00000371997	ENST00000327619		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000371997	ENST00000497428		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
5UTR-intron	ENST00000371997	ENST00000317304		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
intron-3CDS	ENST00000497292	ENST00000357410		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
intron-3CDS	ENST00000497292	ENST00000327619		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
intron-intron	ENST00000497292	ENST00000497428		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
intron-intron	ENST00000497292	ENST00000317304		TCGA	RV	OV	TCGA-23-1030-01A	NCOA3	chr20	46130763	+	EYA2	chr20	45801355	+
Frame-shit	ENST00000551492	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000551492	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000551492	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000551492	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000346562	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000346562	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000346562	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000346562	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
Frame-shit	ENST00000341321	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000341321	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000341321	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000341321	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000548645	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000548645	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000548645	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000548645	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
Frame-shit	ENST00000356141	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000356141	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000356141	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
5CDS-intron	ENST00000356141	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000357798	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000357798	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000357798	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000357798	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000547068	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000547068	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000547068	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000547068	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000551008	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000551008	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000551008	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000551008	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-3CDS	ENST00000550662	ENST00000280979		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000550662	ENST00000557354		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000550662	ENST00000557272		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
intron-intron	ENST00000550662	ENST00000554449		TCGA	RV	OV	TCGA-25-1326-01A	NPAS3	chr14	33525200	+	AKAP6	chr14	33290608	+
Frame-shit	ENST00000425394	ENST00000257979		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
5CDS-5UTR	ENST00000425394	ENST00000555551		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
Frame-shit	ENST00000440411	ENST00000257979		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
5CDS-5UTR	ENST00000440411	ENST00000555551		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
Frame-shit	ENST00000257931	ENST00000257979		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
5CDS-5UTR	ENST00000257931	ENST00000555551		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
In-frame	ENST00000548043	ENST00000257979		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
5CDS-5UTR	ENST00000548043	ENST00000555551		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
intron-3CDS	ENST00000549090	ENST00000257979		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
intron-5UTR	ENST00000549090	ENST00000555551		TCGA	RV	OV	TCGA-24-1553-01A	PAN2	chr12	56726597	-	MIP	chr12	56847539	-
5UTR-3CDS	ENST00000392894	ENST00000305354		TCGA	RV	OV	TCGA-13-1495-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149193610	+
5UTR-3CDS	ENST00000344229	ENST00000305354		TCGA	RV	OV	TCGA-13-1495-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149193610	+
intron-3CDS	ENST00000361785	ENST00000305354		TCGA	RV	OV	TCGA-13-1495-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149193610	+
Frame-shit	ENST00000409003	ENST00000395601		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
Frame-shit	ENST00000409003	ENST00000517992		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
5CDS-5UTR	ENST00000409003	ENST00000519177		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
Frame-shit	ENST00000314727	ENST00000395601		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
Frame-shit	ENST00000314727	ENST00000517992		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
5CDS-5UTR	ENST00000314727	ENST00000519177		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
intron-3CDS	ENST00000527515	ENST00000395601		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
intron-3CDS	ENST00000527515	ENST00000517992		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
intron-5UTR	ENST00000527515	ENST00000519177		TCGA	RV	OV	TCGA-24-1553-01A	SAMD12	chr8	119592954	-	SNTB1	chr8	121644891	-
Frame-shit	ENST00000342907	ENST00000323786		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
5CDS-intron	ENST00000342907	ENST00000393612		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
5CDS-intron	ENST00000342907	ENST00000564653		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
In-frame	ENST00000393640	ENST00000323786		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
5CDS-intron	ENST00000393640	ENST00000393612		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
5CDS-intron	ENST00000393640	ENST00000564653		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
intron-3CDS	ENST00000566097	ENST00000323786		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
intron-intron	ENST00000566097	ENST00000393612		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
intron-intron	ENST00000566097	ENST00000564653		TCGA	RV	OV	TCGA-13-1411-01A	ST3GAL2	chr16	70422270	-	COG4	chr16	70534994	-
intron-3CDS	ENST00000230323	ENST00000373025		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000230323	ENST00000425343		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000358871	ENST00000373025		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000358871	ENST00000425343		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000420312	ENST00000373025		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000420312	ENST00000425343		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000403298	ENST00000373025		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000403298	ENST00000425343		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
5UTR-3CDS	ENST00000373033	ENST00000373025		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
5UTR-3CDS	ENST00000373033	ENST00000425343		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000394283	ENST00000373025		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000394283	ENST00000425343		TCGA	RV	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41711127	-
intron-3CDS	ENST00000437508	ENST00000451320		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
intron-3CDS	ENST00000437508	ENST00000429148		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
intron-3CDS	ENST00000437508	ENST00000353617		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
intron-3CDS	ENST00000437508	ENST00000405727		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
intron-3CDS	ENST00000437508	ENST00000356064		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
intron-intron	ENST00000437508	ENST00000511289		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
3UTR-3CDS	ENST00000494872	ENST00000451320		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
3UTR-3CDS	ENST00000494872	ENST00000429148		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
3UTR-3CDS	ENST00000494872	ENST00000353617		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
3UTR-3CDS	ENST00000494872	ENST00000405727		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
3UTR-3CDS	ENST00000494872	ENST00000356064		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
3UTR-intron	ENST00000494872	ENST00000511289		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000338700	ENST00000451320		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
In-frame	ENST00000338700	ENST00000429148		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000338700	ENST00000353617		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000338700	ENST00000405727		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000338700	ENST00000356064		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
5CDS-intron	ENST00000338700	ENST00000511289		TCGA	RV	OV	TCGA-13-1506-01A	TRIM2	chr4	154125712	+	ARFIP1	chr4	153831216	+
Frame-shit	ENST00000449054	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000449054	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000449054	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000449054	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000449054	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000449054	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000449054	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000449054	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000449054	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379238	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379238	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379238	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000379238	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379238	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000379238	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379238	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379238	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379238	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000360802	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000360802	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000360802	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000360802	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000360802	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000360802	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000360802	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000360802	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000360802	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379239	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379239	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379239	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000379239	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379239	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000379239	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379239	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379239	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379239	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539807	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539807	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539807	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000539807	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000539807	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000539807	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000539807	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000539807	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000539807	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000418786	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000418786	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000418786	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000418786	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000418786	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000418786	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000418786	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000418786	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000418786	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000379225	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000379225	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000379225	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000379225	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000379225	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000379225	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000379225	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000379225	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000379225	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379235	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379235	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379235	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000379235	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000379235	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
In-frame	ENST00000379235	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379235	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379235	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
5CDS-3UTR	ENST00000379235	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000480885	ENST00000566621		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000480885	ENST00000437989		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000480885	ENST00000569302		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000480885	ENST00000567389		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000480885	ENST00000562877		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3CDS	ENST00000480885	ENST00000338183		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000480885	ENST00000565792		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000480885	ENST00000562489		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
intron-3UTR	ENST00000480885	ENST00000563167		TCGA	RV	OV	TCGA-61-2109-01A	UBAP2	chr9	33923184	-	C15orf41	chr15	37100525	+
Frame-shit	ENST00000329542	ENST00000381031		TCGA	RV	OV	TCGA-36-1570-01A	UNC5A	chr5	176237821	+	TTC38	chr22	46681138	+
Frame-shit	ENST00000329542	ENST00000445282		TCGA	RV	OV	TCGA-36-1570-01A	UNC5A	chr5	176237821	+	TTC38	chr22	46681138	+
intron-3CDS	ENST00000261961	ENST00000381031		TCGA	RV	OV	TCGA-36-1570-01A	UNC5A	chr5	176237821	+	TTC38	chr22	46681138	+
intron-3CDS	ENST00000261961	ENST00000445282		TCGA	RV	OV	TCGA-36-1570-01A	UNC5A	chr5	176237821	+	TTC38	chr22	46681138	+
In-frame	ENST00000535572	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000535572	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-5UTR	ENST00000535572	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-intron	ENST00000535572	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000537687	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000537687	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-5UTR	ENST00000537687	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-intron	ENST00000537687	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000315939	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000315939	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-5UTR	ENST00000315939	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-intron	ENST00000315939	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000447667	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000447667	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-5UTR	ENST00000447667	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-intron	ENST00000447667	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000530271	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
In-frame	ENST00000530271	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-5UTR	ENST00000530271	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
5CDS-intron	ENST00000530271	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-3CDS	ENST00000540360	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-3CDS	ENST00000540360	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-5UTR	ENST00000540360	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-intron	ENST00000540360	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-3CDS	ENST00000340908	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-3CDS	ENST00000340908	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-5UTR	ENST00000340908	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-intron	ENST00000340908	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-3CDS	ENST00000574564	ENST00000538872		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-3CDS	ENST00000574564	ENST00000326261		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-5UTR	ENST00000574564	ENST00000382841		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
intron-intron	ENST00000574564	ENST00000537151		TCGA	RV	OV	TCGA-24-0970-01B	WNK1	chr12	863490	+	IQSEC3	chr12	247433	+
Frame-shit	ENST00000379717	ENST00000302909		TCGA	RV	OV	TCGA-09-1673-01A	ZNF512	chr2	27840438	+	KCNK3	chr2	26950535	+
Frame-shit	ENST00000355467	ENST00000302909		TCGA	RV	OV	TCGA-09-1673-01A	ZNF512	chr2	27840438	+	KCNK3	chr2	26950535	+
intron-3CDS	ENST00000494548	ENST00000302909		TCGA	RV	OV	TCGA-09-1673-01A	ZNF512	chr2	27840438	+	KCNK3	chr2	26950535	+
Frame-shit	ENST00000556601	ENST00000302909		TCGA	RV	OV	TCGA-09-1673-01A	ZNF512	chr2	27840438	+	KCNK3	chr2	26950535	+
Frame-shit	ENST00000416005	ENST00000302909		TCGA	RV	OV	TCGA-09-1673-01A	ZNF512	chr2	27840438	+	KCNK3	chr2	26950535	+
Frame-shit	ENST00000413371	ENST00000302909		TCGA	RV	OV	TCGA-09-1673-01A	ZNF512	chr2	27840438	+	KCNK3	chr2	26950535	+
intron-3CDS	ENST00000539909	ENST00000242505		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
intron-intron	ENST00000539909	ENST00000607940		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
intron-3CDS	ENST00000286621	ENST00000242505		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
intron-intron	ENST00000286621	ENST00000607940		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
Frame-shit	ENST00000372734	ENST00000242505		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
5CDS-intron	ENST00000372734	ENST00000607940		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
Frame-shit	ENST00000541550	ENST00000242505		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
5CDS-intron	ENST00000541550	ENST00000607940		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
intron-3CDS	ENST00000467840	ENST00000242505		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
intron-intron	ENST00000467840	ENST00000607940		TCGA	RV	OV	TCGA-24-1426-01A	ADK	chr10	75936644	+	FAM149B1	chr10	74987818	+
5CDS-5UTR	ENST00000379656	ENST00000222249		TCGA	RV	OV	TCGA-25-1329-01A	ARRDC2	chr19	18112382	+	KCNN1	chr19	18084617	+
5CDS-intron	ENST00000379656	ENST00000594192		TCGA	RV	OV	TCGA-25-1329-01A	ARRDC2	chr19	18112382	+	KCNN1	chr19	18084617	+
intron-5UTR	ENST00000222250	ENST00000222249		TCGA	RV	OV	TCGA-25-1329-01A	ARRDC2	chr19	18112382	+	KCNN1	chr19	18084617	+
intron-intron	ENST00000222250	ENST00000594192		TCGA	RV	OV	TCGA-25-1329-01A	ARRDC2	chr19	18112382	+	KCNN1	chr19	18084617	+
intron-5UTR	ENST00000608009	ENST00000222249		TCGA	RV	OV	TCGA-25-1329-01A	ARRDC2	chr19	18112382	+	KCNN1	chr19	18084617	+
intron-intron	ENST00000608009	ENST00000594192		TCGA	RV	OV	TCGA-25-1329-01A	ARRDC2	chr19	18112382	+	KCNN1	chr19	18084617	+
5CDS-intron	ENST00000371073	ENST00000371080		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-intron	ENST00000371073	ENST00000371079		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-intron	ENST00000371073	ENST00000482426		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-5UTR	ENST00000371073	ENST00000545203		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-intron	ENST00000290039	ENST00000371080		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-intron	ENST00000290039	ENST00000371079		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-intron	ENST00000290039	ENST00000482426		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
5CDS-5UTR	ENST00000290039	ENST00000545203		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
intron-intron	ENST00000495994	ENST00000371080		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
intron-intron	ENST00000495994	ENST00000371079		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
intron-intron	ENST00000495994	ENST00000482426		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
intron-5UTR	ENST00000495994	ENST00000545203		TCGA	RV	OV	TCGA-23-1027-01A	CACHD1	chr1	64936625	+	ROR1	chr1	64624664	+
In-frame	ENST00000389532	ENST00000298480		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000487664		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000371757		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000486577		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000491806		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000488444		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000490355		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000389532	ENST00000263604		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000298480		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000487664		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000371757		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000486577		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000491806		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000488444		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000490355		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
5UTR-3CDS	ENST00000312405	ENST00000263604		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000298480		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000487664		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000371757		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000486577		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000491806		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000488444		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000490355		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
intron-3CDS	ENST00000483991	ENST00000263604		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000298480		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000487664		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000371757		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000486577		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000491806		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000488444		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000490355		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
In-frame	ENST00000409386	ENST00000263604		TCGA	RV	OV	TCGA-24-1553-01A	CAMSAP1	chr9	138758302	-	KCNT1	chr9	138656877	+
Frame-shit	ENST00000546361	ENST00000443236		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
5CDS-intron	ENST00000546361	ENST00000597335		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
5CDS-intron	ENST00000546361	ENST00000388925		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
Frame-shit	ENST00000198939	ENST00000443236		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
5CDS-intron	ENST00000198939	ENST00000597335		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
5CDS-intron	ENST00000198939	ENST00000388925		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
intron-3CDS	ENST00000544299	ENST00000443236		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
intron-intron	ENST00000544299	ENST00000597335		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
intron-intron	ENST00000544299	ENST00000388925		TCGA	RV	OV	TCGA-13-0768-01A	CHERP	chr19	16652681	-	CPAMD8	chr19	17017927	-
In-frame	ENST00000401605	ENST00000344773		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000401605	ENST00000379624		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000401605	ENST00000342045		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000401605	ENST00000379632		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000401605	ENST00000361704		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000401605	ENST00000603461		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000401617	ENST00000344773		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000401617	ENST00000379624		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000401617	ENST00000342045		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000401617	ENST00000379632		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000401617	ENST00000361704		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-intron	ENST00000401617	ENST00000603461		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000404424	ENST00000344773		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000404424	ENST00000379624		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000404424	ENST00000342045		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000404424	ENST00000379632		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000404424	ENST00000361704		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000404424	ENST00000603461		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000320081	ENST00000344773		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000320081	ENST00000379624		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000320081	ENST00000342045		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000320081	ENST00000379632		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
In-frame	ENST00000320081	ENST00000361704		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
5CDS-intron	ENST00000320081	ENST00000603461		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000481628	ENST00000344773		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000481628	ENST00000379624		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000481628	ENST00000342045		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000481628	ENST00000379632		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-3CDS	ENST00000481628	ENST00000361704		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
intron-intron	ENST00000481628	ENST00000603461		TCGA	RV	OV	TCGA-25-1323-01A	CLIP4	chr2	29344387	+	BRE	chr2	28521205	+
Frame-shit	ENST00000301180	ENST00000293618		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
Frame-shit	ENST00000301180	ENST00000429001		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
Frame-shit	ENST00000301180	ENST00000398473		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
Frame-shit	ENST00000301180	ENST00000518444		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
Frame-shit	ENST00000301180	ENST00000347328		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
Frame-shit	ENST00000301180	ENST00000522085		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
Frame-shit	ENST00000301180	ENST00000518561		TCGA	RV	OV	TCGA-25-1326-01A	DIP2B	chr12	50899023	+	LARP4	chr12	50829271	+
5UTR-intron	ENST00000449352	ENST00000608655		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000608704		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000449352	ENST00000299402		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000449352	ENST00000609360		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000449352	ENST00000389906		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000449352	ENST00000311051		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000608394		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000529519		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000608645		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000609331		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000530885		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000449352	ENST00000526240		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000608655		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000608704		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-5UTR	ENST00000529360	ENST00000299402		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-5UTR	ENST00000529360	ENST00000609360		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-5UTR	ENST00000529360	ENST00000389906		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-5UTR	ENST00000529360	ENST00000311051		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000608394		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000529519		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000608645		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000609331		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000530885		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
intron-intron	ENST00000529360	ENST00000526240		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000608655		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000608704		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000265978	ENST00000299402		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000265978	ENST00000609360		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000265978	ENST00000389906		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000265978	ENST00000311051		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000608394		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000529519		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000608645		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000609331		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000530885		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000265978	ENST00000526240		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000608655		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000608704		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000524416	ENST00000299402		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000524416	ENST00000609360		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000524416	ENST00000389906		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-5UTR	ENST00000524416	ENST00000311051		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000608394		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000529519		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000608645		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000609331		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000530885		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
5UTR-intron	ENST00000524416	ENST00000526240		TCGA	RV	OV	TCGA-23-2077-01A	FAM160A2	chr11	6255774	-	APBB1	chr11	6432591	-
In-frame	ENST00000337318	ENST00000379953		TCGA	RV	OV	TCGA-25-1326-01A	FAM53B	chr10	126384727	-	LY86	chr6	6654777	+
Frame-shit	ENST00000337318	ENST00000230568		TCGA	RV	OV	TCGA-25-1326-01A	FAM53B	chr10	126384727	-	LY86	chr6	6654777	+
Frame-shit	ENST00000392754	ENST00000379953		TCGA	RV	OV	TCGA-25-1326-01A	FAM53B	chr10	126384727	-	LY86	chr6	6654777	+
In-frame	ENST00000392754	ENST00000230568		TCGA	RV	OV	TCGA-25-1326-01A	FAM53B	chr10	126384727	-	LY86	chr6	6654777	+
In-frame	ENST00000280780	ENST00000379953		TCGA	RV	OV	TCGA-25-1326-01A	FAM53B	chr10	126384727	-	LY86	chr6	6654777	+
Frame-shit	ENST00000280780	ENST00000230568		TCGA	RV	OV	TCGA-25-1326-01A	FAM53B	chr10	126384727	-	LY86	chr6	6654777	+
intron-5UTR	ENST00000358621	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-intron	ENST00000358621	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-5UTR	ENST00000358621	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000357447	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-intron	ENST00000357447	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000357447	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000378503	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-intron	ENST00000378503	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000378503	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-5UTR	ENST00000342409	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-intron	ENST00000342409	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-5UTR	ENST00000342409	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000493380	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-intron	ENST00000493380	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000493380	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000475141	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-intron	ENST00000475141	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5CDS-5UTR	ENST00000475141	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-5UTR	ENST00000492155	ENST00000281441		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-intron	ENST00000492155	ENST00000525709		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
intron-5UTR	ENST00000492155	ENST00000524567		TCGA	RV	OV	TCGA-04-1362-01A	FRMD4A	chr10	14372057	-	TMEM45B	chr11	129722370	+
5UTR-5UTR	ENST00000368917	ENST00000368921		TCGA	RV	OV	TCGA-29-1697-01A	GABPB2	chr1	151043410	+	MLLT11	chr1	151039695	+
5UTR-5UTR	ENST00000368918	ENST00000368921		TCGA	RV	OV	TCGA-29-1697-01A	GABPB2	chr1	151043410	+	MLLT11	chr1	151039695	+
intron-5UTR	ENST00000368916	ENST00000368921		TCGA	RV	OV	TCGA-29-1697-01A	GABPB2	chr1	151043410	+	MLLT11	chr1	151039695	+
intron-5UTR	ENST00000467551	ENST00000368921		TCGA	RV	OV	TCGA-29-1697-01A	GABPB2	chr1	151043410	+	MLLT11	chr1	151039695	+
5UTR-3CDS	ENST00000591471	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-3CDS	ENST00000591471	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-3CDS	ENST00000591471	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-5UTR	ENST00000591471	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-5UTR	ENST00000591471	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
3UTR-3CDS	ENST00000589218	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
3UTR-3CDS	ENST00000589218	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
3UTR-3CDS	ENST00000589218	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
3UTR-5UTR	ENST00000589218	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
3UTR-5UTR	ENST00000589218	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-3CDS	ENST00000544914	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-3CDS	ENST00000544914	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-3CDS	ENST00000544914	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-5UTR	ENST00000544914	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
5UTR-5UTR	ENST00000544914	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591417	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591417	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591417	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000591417	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000591417	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000592168	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000592168	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000592168	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000592168	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000592168	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000392153	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000392153	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000392153	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000392153	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000392153	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000589392	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000589392	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000589392	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000589392	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000589392	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000324411	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000324411	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000324411	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000324411	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000324411	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591259	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591259	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591259	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000591259	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000591259	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000541583	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000541583	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000541583	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000541583	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000541583	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591134	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591134	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000591134	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000591134	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000591134	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000586897	ENST00000302102		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000586897	ENST00000545399		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-3CDS	ENST00000586897	ENST00000543770		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000586897	ENST00000602133		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
intron-5UTR	ENST00000586897	ENST00000468774		TCGA	RV	OV	TCGA-25-1321-01A	HKR1	chr19	37815167	+	ATP1A3	chr19	42492714	-
Frame-shit	ENST00000311936	ENST00000282881		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000311936	ENST00000539744		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000311936	ENST00000458174		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000311936	ENST00000445693		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000311936	ENST00000413632		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000557334	ENST00000282881		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000557334	ENST00000539744		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000557334	ENST00000458174		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000557334	ENST00000445693		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000557334	ENST00000413632		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000256078	ENST00000282881		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000256078	ENST00000539744		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000256078	ENST00000458174		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000256078	ENST00000445693		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000256078	ENST00000413632		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000556131	ENST00000282881		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
In-frame	ENST00000556131	ENST00000539744		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000556131	ENST00000458174		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000556131	ENST00000445693		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
Frame-shit	ENST00000556131	ENST00000413632		TCGA	RV	OV	TCGA-13-1511-01A	KRAS	chr12	25398208	-	IFLTD1	chr12	25656734	-
intron-intron	ENST00000492698	ENST00000405201		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
intron-intron	ENST00000492698	ENST00000404621		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
intron-intron	ENST00000492698	ENST00000404121		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
intron-intron	ENST00000492698	ENST00000356219		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
intron-intron	ENST00000492698	ENST00000397355		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
intron-intron	ENST00000492698	ENST00000429285		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000252999	ENST00000405201		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000252999	ENST00000404621		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000252999	ENST00000404121		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000252999	ENST00000356219		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000252999	ENST00000397355		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000252999	ENST00000429285		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370692	ENST00000405201		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370692	ENST00000404621		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370692	ENST00000404121		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370692	ENST00000356219		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370692	ENST00000397355		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370692	ENST00000429285		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370677	ENST00000405201		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370677	ENST00000404621		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370677	ENST00000404121		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370677	ENST00000356219		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370677	ENST00000397355		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
5CDS-intron	ENST00000370677	ENST00000429285		TCGA	RV	OV	TCGA-04-1362-01A	LAMA5	chr20	60926760	-	NCOR2	chr12	124841352	-
Frame-shit	ENST00000293872	ENST00000262320		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000293872	ENST00000354866		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000293872	ENST00000481769		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000337351	ENST00000262320		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000337351	ENST00000354866		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000337351	ENST00000481769		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397783	ENST00000262320		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397783	ENST00000354866		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000397783	ENST00000481769		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397780	ENST00000262320		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
Frame-shit	ENST00000397780	ENST00000354866		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
5CDS-5UTR	ENST00000397780	ENST00000481769		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
intron-3CDS	ENST00000494366	ENST00000262320		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
intron-3CDS	ENST00000494366	ENST00000354866		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
intron-5UTR	ENST00000494366	ENST00000481769		TCGA	RV	OV	TCGA-13-1511-01A	LUC7L	chr16	249061	-	AXIN1	chr16	364683	-
intron-intron	ENST00000444836	ENST00000485046		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000444836	ENST00000376369		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000444836	ENST00000196061		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000235329	ENST00000485046		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000235329	ENST00000376369		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000235329	ENST00000196061		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000497302	ENST00000485046		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000497302	ENST00000376369		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
intron-intron	ENST00000497302	ENST00000196061		TCGA	RV	OV	TCGA-23-1118-01A	MFN2	chr1	12042647	+	PLOD1	chr1	12034710	+
5CDS-intron	ENST00000392328	ENST00000478197		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000392328	ENST00000396974		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000392328	ENST00000409870		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000392328	ENST00000340623		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000392328	ENST00000443551		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-intron	ENST00000281416	ENST00000478197		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000281416	ENST00000396974		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000281416	ENST00000409870		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000281416	ENST00000340623		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-5UTR	ENST00000281416	ENST00000443551		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-intron	ENST00000535751	ENST00000478197		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000535751	ENST00000396974		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000535751	ENST00000409870		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000535751	ENST00000340623		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000535751	ENST00000443551		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-intron	ENST00000489793	ENST00000478197		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000489793	ENST00000396974		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000489793	ENST00000409870		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000489793	ENST00000340623		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
intron-5UTR	ENST00000489793	ENST00000443551		TCGA	RV	OV	TCGA-24-1545-01A	MFSD6	chr2	191302287	+	C2orf88	chr2	191064423	+
5CDS-intron	ENST00000354179	ENST00000506693		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000358149		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000512315		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000503425		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000261948		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000511834		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000354179	ENST00000503039		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000506693		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000358149		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000512315		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000503425		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000261948		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000511834		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000439151	ENST00000503039		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000506693		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000358149		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000512315		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000503425		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000261948		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000511834		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000347982	ENST00000503039		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000506693		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000358149		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000512315		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000503425		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000261948		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000511834		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
5CDS-intron	ENST00000361032	ENST00000503039		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000506693		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000358149		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000512315		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000503425		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000261948		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000511834		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
intron-intron	ENST00000511258	ENST00000503039		TCGA	RV	OV	TCGA-24-1427-01A	NSD1	chr5	176678854	+	ZNF346	chr5	176468127	+
In-frame	ENST00000262241	ENST00000422945		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000556068		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000554442		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000328724		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000350249		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000445439		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000334743		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000557095		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000556260		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000556946		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000262241	ENST00000557714		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
In-frame	ENST00000570597	ENST00000422945		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000556068		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000554442		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000328724		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000350249		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000445439		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000334743		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000557095		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000556260		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000556946		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000570597	ENST00000557714		TCGA	RV	OV	TCGA-13-1410-01A	RCOR1	chr14	103059662	+	PPP2R5C	chr14	102391478	+
5CDS-intron	ENST00000531287	ENST00000419197		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531287	ENST00000526888		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531287	ENST00000527958		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531287	ENST00000529887		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531287	ENST00000530272		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531452	ENST00000419197		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531452	ENST00000526888		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531452	ENST00000527958		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531452	ENST00000529887		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000531452	ENST00000530272		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000530849	ENST00000419197		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000530849	ENST00000526888		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000530849	ENST00000527958		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000530849	ENST00000529887		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000530849	ENST00000530272		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000300650	ENST00000419197		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000300650	ENST00000526888		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000300650	ENST00000527958		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000300650	ENST00000529887		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5CDS-intron	ENST00000300650	ENST00000530272		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
intron-intron	ENST00000524917	ENST00000419197		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
intron-intron	ENST00000524917	ENST00000526888		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
intron-intron	ENST00000524917	ENST00000527958		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
intron-intron	ENST00000524917	ENST00000529887		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
intron-intron	ENST00000524917	ENST00000530272		TCGA	RV	OV	TCGA-24-2023-01A	RNF214	chr11	117115301	+	PAFAH1B2	chr11	117042338	+
5UTR-3CDS	ENST00000361757	ENST00000262971		TCGA	RV	OV	TCGA-24-1431-01A	SBNO2	chr19	1174171	-	PIAS4	chr19	4012921	+
5UTR-intron	ENST00000361757	ENST00000596144		TCGA	RV	OV	TCGA-24-1431-01A	SBNO2	chr19	1174171	-	PIAS4	chr19	4012921	+
5UTR-3CDS	ENST00000587024	ENST00000262971		TCGA	RV	OV	TCGA-24-1431-01A	SBNO2	chr19	1174171	-	PIAS4	chr19	4012921	+
5UTR-intron	ENST00000587024	ENST00000596144		TCGA	RV	OV	TCGA-24-1431-01A	SBNO2	chr19	1174171	-	PIAS4	chr19	4012921	+
intron-3CDS	ENST00000438103	ENST00000262971		TCGA	RV	OV	TCGA-24-1431-01A	SBNO2	chr19	1174171	-	PIAS4	chr19	4012921	+
intron-intron	ENST00000438103	ENST00000596144		TCGA	RV	OV	TCGA-24-1431-01A	SBNO2	chr19	1174171	-	PIAS4	chr19	4012921	+
5UTR-3CDS	ENST00000265565	ENST00000430379		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000265565	ENST00000319017		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-5UTR	ENST00000265565	ENST00000544097		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000441517	ENST00000430379		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000441517	ENST00000319017		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-5UTR	ENST00000441517	ENST00000544097		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000545718	ENST00000430379		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-3CDS	ENST00000545718	ENST00000319017		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
5UTR-5UTR	ENST00000545718	ENST00000544097		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
intron-3CDS	ENST00000465628	ENST00000430379		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
intron-3CDS	ENST00000465628	ENST00000319017		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
intron-5UTR	ENST00000465628	ENST00000544097		TCGA	RV	OV	TCGA-24-1467-01A	SCAP	chr3	47517289	-	SLC25A20	chr3	48929505	-
intron-5UTR	ENST00000538941	ENST00000561030		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000538941	ENST00000567605		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000538941	ENST00000355300		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
5CDS-5UTR	ENST00000563290	ENST00000561030		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000563290	ENST00000567605		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000563290	ENST00000355300		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
5CDS-5UTR	ENST00000324767	ENST00000561030		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000324767	ENST00000567605		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000324767	ENST00000355300		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
intron-5UTR	ENST00000562890	ENST00000561030		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000562890	ENST00000567605		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
intron-intron	ENST00000562890	ENST00000355300		TCGA	RV	OV	TCGA-13-0893-01B	SCAPER	chr15	77176153	-	LINGO1	chr15	77908242	-
Frame-shit	ENST00000432059	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000432059	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000432059	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000432059	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000335472	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000335472	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000335472	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000335472	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000264986	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000264986	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000264986	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000264986	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000507030	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000507030	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000507030	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000507030	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000394062	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000394062	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000394062	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000394062	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000394059	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000394059	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000394059	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000394059	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5UTR-3CDS	ENST00000511315	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5UTR-3CDS	ENST00000511315	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5UTR-3CDS	ENST00000511315	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5UTR-intron	ENST00000511315	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000511374	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000511374	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000511374	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000511374	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000502607	ENST00000513335		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000502607	ENST00000398886		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
Frame-shit	ENST00000502607	ENST00000325106		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
5CDS-intron	ENST00000502607	ENST00000506019		TCGA	RV	OV	TCGA-13-0760-01A	SLC10A7	chr4	147438190	-	TTC29	chr4	147628703	-
intron-3CDS	ENST00000555245	ENST00000369075		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
intron-3CDS	ENST00000555245	ENST00000543134		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
intron-intron	ENST00000555245	ENST00000475542		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000556605	ENST00000369075		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000556605	ENST00000543134		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
5CDS-intron	ENST00000556605	ENST00000475542		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000336643	ENST00000369075		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000336643	ENST00000543134		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
5CDS-intron	ENST00000336643	ENST00000475542		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000031146	ENST00000369075		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000031146	ENST00000543134		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
5CDS-intron	ENST00000031146	ENST00000475542		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000557046	ENST00000369075		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
In-frame	ENST00000557046	ENST00000543134		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
5CDS-intron	ENST00000557046	ENST00000475542		TCGA	RV	OV	TCGA-30-1860-01A	SLC39A9	chr14	69866182	+	SEC23IP	chr10	121689119	+
intron-3CDS	ENST00000430069	ENST00000262811		TCGA	RV	OV	TCGA-24-0970-01B	TBL1XR1	chr3	176914909	-	MAST3	chr19	18245389	+
intron-intron	ENST00000430069	ENST00000608648		TCGA	RV	OV	TCGA-24-0970-01B	TBL1XR1	chr3	176914909	-	MAST3	chr19	18245389	+
5UTR-3CDS	ENST00000457928	ENST00000262811		TCGA	RV	OV	TCGA-24-0970-01B	TBL1XR1	chr3	176914909	-	MAST3	chr19	18245389	+
5UTR-intron	ENST00000457928	ENST00000608648		TCGA	RV	OV	TCGA-24-0970-01B	TBL1XR1	chr3	176914909	-	MAST3	chr19	18245389	+
intron-3CDS	ENST00000304621	ENST00000400473		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-3CDS	ENST00000304621	ENST00000256925		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-intron	ENST00000304621	ENST00000585061		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-intron	ENST00000304621	ENST00000420687		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
Frame-shit	ENST00000317571	ENST00000400473		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
In-frame	ENST00000317571	ENST00000256925		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
5CDS-intron	ENST00000317571	ENST00000585061		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
5CDS-intron	ENST00000317571	ENST00000420687		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
3UTR-3CDS	ENST00000578150	ENST00000400473		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
3UTR-3CDS	ENST00000578150	ENST00000256925		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
3UTR-intron	ENST00000578150	ENST00000585061		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
3UTR-intron	ENST00000578150	ENST00000420687		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
Frame-shit	ENST00000584250	ENST00000400473		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
In-frame	ENST00000584250	ENST00000256925		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
5CDS-intron	ENST00000584250	ENST00000585061		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
5CDS-intron	ENST00000584250	ENST00000420687		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-3CDS	ENST00000577185	ENST00000400473		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-3CDS	ENST00000577185	ENST00000256925		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-intron	ENST00000577185	ENST00000585061		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-intron	ENST00000577185	ENST00000420687		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-3CDS	ENST00000540918	ENST00000400473		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-3CDS	ENST00000540918	ENST00000256925		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-intron	ENST00000540918	ENST00000585061		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
intron-intron	ENST00000540918	ENST00000420687		TCGA	RV	OV	TCGA-13-0893-01B	TTC39C	chr18	21595002	+	CABLES1	chr18	20837191	+
5CDS-intron	ENST00000339859	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-5UTR	ENST00000339859	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000339859	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-5UTR	ENST00000408019	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000408019	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-5UTR	ENST00000428547	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000428547	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-5UTR	ENST00000394811	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5UTR-intron	ENST00000394811	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-5UTR	ENST00000497106	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000497106	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-5UTR	ENST00000422491	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
intron-intron	ENST00000422491	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000414778		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000373965		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395438		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000409834		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395440		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395446		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395442		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395445		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-5UTR	ENST00000319786	ENST00000373957		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395432		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395433		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000361849		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000395430		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000320301		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000437009		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000373955		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-intron	ENST00000319786	ENST00000463095		TCGA	RV	OV	TCGA-13-1507-01A	USP54	chr10	75331179	-	PCDH15	chr10	56926411	-
5CDS-5UTR	ENST00000356136	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000356136	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000356136	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000528420	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000528420	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000528420	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000533454	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000533454	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000533454	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000531818	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000531818	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000531818	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000532130	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000532130	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000532130	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000539288	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000539288	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000539288	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000525872	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000525872	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000525872	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000538870	ENST00000064778		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000538870	ENST00000450446		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000538870	ENST00000356467		TCGA	RV	OV	TCGA-24-0970-01B	UVRAG	chr11	75572825	+	FAM168A	chr11	73179537	-
5CDS-3UTR	ENST00000176643	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
5CDS-3UTR	ENST00000581518	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
5CDS-3UTR	ENST00000395575	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
5CDS-3UTR	ENST00000339618	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
5CDS-3UTR	ENST00000579855	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
intron-3UTR	ENST00000571163	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
intron-3UTR	ENST00000574597	ENST00000276943		TCGA	RV	OV	TCGA-13-1408-01A	ALDH3A2	chr17	19575269	+	IFNK	chr9	27526005	+
5CDS-5UTR	ENST00000334126	ENST00000318074		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-5UTR	ENST00000334126	ENST00000543823		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-intron	ENST00000334126	ENST00000490170		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-5UTR	ENST00000313663	ENST00000318074		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-5UTR	ENST00000313663	ENST00000543823		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-intron	ENST00000313663	ENST00000490170		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
intron-5UTR	ENST00000542452	ENST00000318074		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
intron-5UTR	ENST00000542452	ENST00000543823		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
intron-intron	ENST00000542452	ENST00000490170		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-5UTR	ENST00000539061	ENST00000318074		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-5UTR	ENST00000539061	ENST00000543823		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
5CDS-intron	ENST00000539061	ENST00000490170		TCGA	RV	OV	TCGA-09-2048-01A	C2CD3	chr11	73849765	-	SYTL1	chr1	27671788	+
Frame-shit	ENST00000334206	ENST00000251636		TCGA	RV	OV	TCGA-13-0893-01B	CDC20B	chr5	54468416	-	DHX29	chr5	54552368	-
Frame-shit	ENST00000296733	ENST00000251636		TCGA	RV	OV	TCGA-13-0893-01B	CDC20B	chr5	54468416	-	DHX29	chr5	54552368	-
Frame-shit	ENST00000381375	ENST00000251636		TCGA	RV	OV	TCGA-13-0893-01B	CDC20B	chr5	54468416	-	DHX29	chr5	54552368	-
Frame-shit	ENST00000322374	ENST00000251636		TCGA	RV	OV	TCGA-13-0893-01B	CDC20B	chr5	54468416	-	DHX29	chr5	54552368	-
intron-3CDS	ENST00000331730	ENST00000251636		TCGA	RV	OV	TCGA-13-0893-01B	CDC20B	chr5	54468416	-	DHX29	chr5	54552368	-
5UTR-3CDS	ENST00000423902	ENST00000317025		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
5UTR-3CDS	ENST00000423902	ENST00000433384		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
5UTR-3CDS	ENST00000423902	ENST00000527502		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
5UTR-intron	ENST00000423902	ENST00000316985		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
5UTR-intron	ENST00000423902	ENST00000525081		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000524602	ENST00000317025		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000524602	ENST00000433384		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000524602	ENST00000527502		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-intron	ENST00000524602	ENST00000316985		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-intron	ENST00000524602	ENST00000525081		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000525508	ENST00000317025		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000525508	ENST00000433384		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000525508	ENST00000527502		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-intron	ENST00000525508	ENST00000316985		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-intron	ENST00000525508	ENST00000525081		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000529472	ENST00000317025		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000529472	ENST00000433384		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-3CDS	ENST00000529472	ENST00000527502		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-intron	ENST00000529472	ENST00000316985		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
intron-intron	ENST00000529472	ENST00000525081		TCGA	RV	OV	TCGA-24-1604-01A	CHD7	chr8	61591641	+	WHSC1L1	chr8	38162963	-
5CDS-3UTR	ENST00000390654	ENST00000514747		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-3UTR	ENST00000390654	ENST00000329540		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-3UTR	ENST00000390654	ENST00000443375		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-intron	ENST00000390654	ENST00000508298		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-3UTR	ENST00000407622	ENST00000514747		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-3UTR	ENST00000407622	ENST00000329540		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-3UTR	ENST00000407622	ENST00000443375		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-intron	ENST00000407622	ENST00000508298		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5UTR-3UTR	ENST00000484750	ENST00000514747		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5UTR-3UTR	ENST00000484750	ENST00000329540		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5UTR-3UTR	ENST00000484750	ENST00000443375		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5UTR-intron	ENST00000484750	ENST00000508298		TCGA	RV	OV	TCGA-24-2024-01A	COL23A1	chr5	177987683	-	FAM193B	chr5	176947182	-
5CDS-5UTR	ENST00000394900	ENST00000227525		TCGA	RV	OV	TCGA-04-1356-01A	DAK	chr11	61113418	+	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000394900	ENST00000536171		TCGA	RV	OV	TCGA-04-1356-01A	DAK	chr11	61113418	+	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000394900	ENST00000540280		TCGA	RV	OV	TCGA-04-1356-01A	DAK	chr11	61113418	+	TMEM109	chr11	60687158	+
intron-5UTR	ENST00000530057	ENST00000227525		TCGA	RV	OV	TCGA-04-1356-01A	DAK	chr11	61113418	+	TMEM109	chr11	60687158	+
intron-5UTR	ENST00000530057	ENST00000536171		TCGA	RV	OV	TCGA-04-1356-01A	DAK	chr11	61113418	+	TMEM109	chr11	60687158	+
intron-intron	ENST00000530057	ENST00000540280		TCGA	RV	OV	TCGA-04-1356-01A	DAK	chr11	61113418	+	TMEM109	chr11	60687158	+
In-frame	ENST00000301607	ENST00000307877		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000301607	ENST00000539137		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000301607	ENST00000355113		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000301607	ENST00000602720		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
5CDS-5UTR	ENST00000301607	ENST00000542536		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000586740	ENST00000307877		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000586740	ENST00000539137		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000586740	ENST00000355113		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
In-frame	ENST00000586740	ENST00000602720		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
5CDS-5UTR	ENST00000586740	ENST00000542536		TCGA	RV	OV	TCGA-04-1517-01A	EVPL	chr17	74019373	-	SRP68	chr17	74041467	-
5UTR-3CDS	ENST00000398810	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000398810	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000398810	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000398810	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000398810	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
Frame-shit	ENST00000439599	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000439599	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000439599	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000439599	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000439599	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
Frame-shit	ENST00000398812	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000398812	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000398812	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000398812	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000398812	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-3CDS	ENST00000335866	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000335866	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000335866	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000335866	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000335866	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-3CDS	ENST00000402578	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000402578	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000402578	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000402578	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000402578	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
Frame-shit	ENST00000403097	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000403097	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000403097	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000403097	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000403097	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-3CDS	ENST00000406641	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000406641	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000406641	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000406641	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000406641	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
Frame-shit	ENST00000357271	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000357271	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000357271	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000357271	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000357271	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-3CDS	ENST00000407526	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000407526	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000407526	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000407526	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000407526	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
Frame-shit	ENST00000401949	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000401949	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000401949	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000401949	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5CDS-intron	ENST00000401949	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-3CDS	ENST00000402497	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000402497	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000402497	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000402497	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
5UTR-intron	ENST00000402497	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-3CDS	ENST00000483819	ENST00000323959		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000483819	ENST00000524827		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000483819	ENST00000526480		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000483819	ENST00000438862		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
intron-intron	ENST00000483819	ENST00000431742		TCGA	RV	OV	TCGA-61-1917-01A	GRB10	chr7	50771518	-	CSTF3	chr11	33108687	-
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	OV	TCGA-24-1616-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	OV	TCGA-24-1616-01A	IL27RA	chr19	14153601	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000361937	ENST00000355327		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
Frame-shit	ENST00000361937	ENST00000261862		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
Frame-shit	ENST00000361937	ENST00000357769		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
5CDS-3UTR	ENST00000361937	ENST00000567838		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
In-frame	ENST00000401393	ENST00000355327		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
In-frame	ENST00000401393	ENST00000261862		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
In-frame	ENST00000401393	ENST00000357769		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
5CDS-3UTR	ENST00000401393	ENST00000567838		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
intron-3CDS	ENST00000561244	ENST00000355327		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
intron-3CDS	ENST00000561244	ENST00000261862		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
intron-3CDS	ENST00000561244	ENST00000357769		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
intron-3UTR	ENST00000561244	ENST00000567838		TCGA	RV	OV	TCGA-29-1702-01A	INO80	chr15	41313098	-	THSD4	chr15	72020888	+
5CDS-3UTR	ENST00000368594	ENST00000490765		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
5CDS-3UTR	ENST00000368594	ENST00000321248		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
5CDS-3UTR	ENST00000368594	ENST00000392630		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
5CDS-3UTR	ENST00000368593	ENST00000490765		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
5CDS-3UTR	ENST00000368593	ENST00000321248		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
5CDS-3UTR	ENST00000368593	ENST00000392630		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
intron-3UTR	ENST00000487614	ENST00000490765		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
intron-3UTR	ENST00000487614	ENST00000321248		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
intron-3UTR	ENST00000487614	ENST00000392630		TCGA	RV	OV	TCGA-24-2023-01A	INPP5A	chr10	134351675	+	C10orf91	chr10	134259200	+
Frame-shit	ENST00000300952	ENST00000316156		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
Frame-shit	ENST00000300952	ENST00000373150		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
Frame-shit	ENST00000300952	ENST00000373151		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
5CDS-intron	ENST00000300952	ENST00000474796		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
5CDS-intron	ENST00000300952	ENST00000373148		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
Frame-shit	ENST00000591446	ENST00000316156		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
Frame-shit	ENST00000591446	ENST00000373150		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
Frame-shit	ENST00000591446	ENST00000373151		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
5CDS-intron	ENST00000591446	ENST00000474796		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
5CDS-intron	ENST00000591446	ENST00000373148		TCGA	RV	OV	TCGA-04-1517-01A	MIDN	chr19	1255693	+	MAP7D1	chr1	36643474	+
In-frame	ENST00000595618	ENST00000291503		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
In-frame	ENST00000595618	ENST00000357324		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
5CDS-intron	ENST00000595618	ENST00000496082		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
In-frame	ENST00000594824	ENST00000291503		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
In-frame	ENST00000594824	ENST00000357324		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
5CDS-intron	ENST00000594824	ENST00000496082		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
In-frame	ENST00000397274	ENST00000291503		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
In-frame	ENST00000397274	ENST00000357324		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
5CDS-intron	ENST00000397274	ENST00000496082		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
3UTR-3CDS	ENST00000593411	ENST00000291503		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
3UTR-3CDS	ENST00000593411	ENST00000357324		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
3UTR-intron	ENST00000593411	ENST00000496082		TCGA	RV	OV	TCGA-61-2102-01A	MYO9B	chr19	17213367	+	ATP13A1	chr19	19758337	-
5UTR-3CDS	ENST00000257829	ENST00000341394		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000257829	ENST00000389645		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000257829	ENST00000532820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000257829	ENST00000530820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000257829	ENST00000529307		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3UTR	ENST00000257829	ENST00000533657		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000531159	ENST00000341394		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000531159	ENST00000389645		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000531159	ENST00000532820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000531159	ENST00000530820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3CDS	ENST00000531159	ENST00000529307		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
5UTR-3UTR	ENST00000531159	ENST00000533657		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000527971	ENST00000341394		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000527971	ENST00000389645		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000527971	ENST00000532820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000527971	ENST00000530820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000527971	ENST00000529307		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3UTR	ENST00000527971	ENST00000533657		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000341394		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000389645		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000532820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000530820		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3CDS	ENST00000532555	ENST00000529307		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
intron-3UTR	ENST00000532555	ENST00000533657		TCGA	RV	OV	TCGA-13-1501-01A	NAT10	chr11	34127339	+	CAPRIN1	chr11	34118026	+
In-frame	ENST00000376279	ENST00000397601		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376279	ENST00000343600		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376279	ENST00000345429		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376279	ENST00000376673		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376279	ENST00000445661		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376286	ENST00000397601		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376286	ENST00000343600		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376286	ENST00000345429		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376286	ENST00000376673		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376286	ENST00000445661		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376285	ENST00000397601		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376285	ENST00000343600		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376285	ENST00000345429		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376285	ENST00000376673		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000376285	ENST00000445661		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
intron-3CDS	ENST00000485946	ENST00000397601		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
intron-3CDS	ENST00000485946	ENST00000343600		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
intron-3CDS	ENST00000485946	ENST00000345429		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
intron-3CDS	ENST00000485946	ENST00000376673		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
intron-3CDS	ENST00000485946	ENST00000445661		TCGA	RV	OV	TCGA-09-1673-01A	PCCA	chr13	100861717	+	MBNL2	chr13	97986530	+
In-frame	ENST00000395346	ENST00000321765		TCGA	RV	OV	TCGA-24-1847-01A	PIGS	chr17	26887067	-	SPAG5	chr17	26913517	-
In-frame	ENST00000308360	ENST00000321765		TCGA	RV	OV	TCGA-24-1847-01A	PIGS	chr17	26887067	-	SPAG5	chr17	26913517	-
Frame-shit	ENST00000543734	ENST00000321765		TCGA	RV	OV	TCGA-24-1847-01A	PIGS	chr17	26887067	-	SPAG5	chr17	26913517	-
5UTR-3CDS	ENST00000465444	ENST00000321765		TCGA	RV	OV	TCGA-24-1847-01A	PIGS	chr17	26887067	-	SPAG5	chr17	26913517	-
Frame-shit	ENST00000394836	ENST00000519301		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000520407		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000523079		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000338921		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000356819		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000287845		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000341377		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000287842		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000521670		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000405005		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000520502		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000394836	ENST00000539990		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000394836	ENST00000523681		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000519301		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000520407		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000523079		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000338921		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000356819		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000287845		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000341377		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000287842		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000521670		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000405005		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000520502		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
Frame-shit	ENST00000301773	ENST00000539990		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000301773	ENST00000523681		TCGA	RV	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61669914	-	NRG1	chr8	32585467	+
5UTR-3CDS	ENST00000319592	ENST00000381295		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000319592	ENST00000346134		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000319592	ENST00000349598		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000381793	ENST00000381295		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000381793	ENST00000346134		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000381793	ENST00000349598		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000381795	ENST00000381295		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000381795	ENST00000346134		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000381795	ENST00000349598		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000295971	ENST00000381295		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000295971	ENST00000346134		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000295971	ENST00000349598		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000514014	ENST00000381295		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000514014	ENST00000346134		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
5UTR-3CDS	ENST00000514014	ENST00000349598		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000515809	ENST00000381295		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000515809	ENST00000346134		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
intron-3CDS	ENST00000515809	ENST00000349598		TCGA	RV	OV	TCGA-36-1571-01A	RBM47	chr4	40546439	-	EXOC1	chr4	56744083	+
In-frame	ENST00000254260	ENST00000263269		TCGA	RV	OV	TCGA-24-1544-01A	RHPN2	chr19	33481420	-	GRIN2D	chr19	48919259	+
Frame-shit	ENST00000400226	ENST00000263269		TCGA	RV	OV	TCGA-24-1544-01A	RHPN2	chr19	33481420	-	GRIN2D	chr19	48919259	+
5UTR-3CDS	ENST00000588683	ENST00000263269		TCGA	RV	OV	TCGA-24-1544-01A	RHPN2	chr19	33481420	-	GRIN2D	chr19	48919259	+
5UTR-3CDS	ENST00000345093	ENST00000359786		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000345093	ENST00000438665		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000345093	ENST00000575158		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000345093	ENST00000361007		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000345093	ENST00000545534		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-intron	ENST00000345093	ENST00000573198		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000394013	ENST00000359786		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000394013	ENST00000438665		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000394013	ENST00000575158		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000394013	ENST00000361007		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000394013	ENST00000545534		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-intron	ENST00000394013	ENST00000573198		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000552656	ENST00000359786		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000552656	ENST00000438665		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000552656	ENST00000575158		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000552656	ENST00000361007		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-3CDS	ENST00000552656	ENST00000545534		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
5UTR-intron	ENST00000552656	ENST00000573198		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
intron-3CDS	ENST00000552244	ENST00000359786		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
intron-3CDS	ENST00000552244	ENST00000438665		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
intron-3CDS	ENST00000552244	ENST00000575158		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
intron-3CDS	ENST00000552244	ENST00000361007		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
intron-3CDS	ENST00000552244	ENST00000545534		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
intron-intron	ENST00000552244	ENST00000573198		TCGA	RV	OV	TCGA-24-1105-01A	RNF41	chr12	56610213	-	MYO1C	chr17	1385852	-
In-frame	ENST00000427662	ENST00000267163		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5CDS-intron	ENST00000427662	ENST00000484879		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
In-frame	ENST00000369774	ENST00000267163		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5CDS-intron	ENST00000369774	ENST00000484879		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
In-frame	ENST00000355946	ENST00000267163		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5CDS-intron	ENST00000355946	ENST00000484879		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5UTR-3CDS	ENST00000315994	ENST00000267163		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5UTR-intron	ENST00000315994	ENST00000484879		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
In-frame	ENST00000540321	ENST00000267163		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5CDS-intron	ENST00000540321	ENST00000484879		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
In-frame	ENST00000538130	ENST00000267163		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5CDS-intron	ENST00000538130	ENST00000484879		TCGA	RV	OV	TCGA-24-1469-01A	SH3PXD2A	chr10	105371338	-	RB1	chr13	49039134	+
5CDS-intron	ENST00000336915	ENST00000338130		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000336915	ENST00000380441		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000336915	ENST00000380455		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000336915	ENST00000380454		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000336915	ENST00000380430		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000336915	ENST00000606474		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000584924	ENST00000338130		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000584924	ENST00000380441		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000584924	ENST00000380455		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000584924	ENST00000380454		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000584924	ENST00000380430		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5CDS-intron	ENST00000584924	ENST00000606474		TCGA	RV	OV	TCGA-20-1687-01A	SKAP1	chr17	46423267	-	NQO2	chr6	2994165	+
5UTR-3CDS	ENST00000393328	ENST00000240333		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000393328	ENST00000415270		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000393331	ENST00000240333		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000393331	ENST00000415270		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000347630	ENST00000240333		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000347630	ENST00000415270		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000504102	ENST00000240333		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000504102	ENST00000415270		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
intron-3CDS	ENST00000503676	ENST00000240333		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
intron-3CDS	ENST00000503676	ENST00000415270		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000513080	ENST00000240333		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5UTR-3CDS	ENST00000513080	ENST00000415270		TCGA	RV	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783671	-
5CDS-3UTR	ENST00000320672	ENST00000507668		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000320672	ENST00000512972		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000320672	ENST00000509193		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000320672	ENST00000512721		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000320672	ENST00000513907		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000509053	ENST00000507668		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000509053	ENST00000512972		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000509053	ENST00000509193		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000509053	ENST00000512721		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000509053	ENST00000513907		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000514493	ENST00000507668		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000514493	ENST00000512972		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000514493	ENST00000509193		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000514493	ENST00000512721		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000514493	ENST00000513907		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
intron-3UTR	ENST00000510060	ENST00000507668		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
intron-3UTR	ENST00000510060	ENST00000512972		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
intron-3UTR	ENST00000510060	ENST00000509193		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
intron-intron	ENST00000510060	ENST00000512721		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
intron-intron	ENST00000510060	ENST00000513907		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000505980	ENST00000507668		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000505980	ENST00000512972		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000505980	ENST00000509193		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000505980	ENST00000512721		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000505980	ENST00000513907		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000515395	ENST00000507668		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000515395	ENST00000512972		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-3UTR	ENST00000515395	ENST00000509193		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000515395	ENST00000512721		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
5CDS-intron	ENST00000515395	ENST00000513907		TCGA	RV	OV	TCGA-04-1542-01A	SSBP2	chr5	80762793	-	SERINC5	chr5	79407525	-
Frame-shit	ENST00000393245	ENST00000442713		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000393245	ENST00000269445		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000393245	ENST00000584977		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000393245	ENST00000578396		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000265388	ENST00000442713		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000265388	ENST00000269445		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000265388	ENST00000584977		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000265388	ENST00000578396		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5UTR-3CDS	ENST00000482320	ENST00000442713		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5UTR-3CDS	ENST00000482320	ENST00000269445		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5UTR-intron	ENST00000482320	ENST00000584977		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5UTR-intron	ENST00000482320	ENST00000578396		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000471234	ENST00000442713		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000471234	ENST00000269445		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000471234	ENST00000584977		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000471234	ENST00000578396		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000471166	ENST00000442713		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000471166	ENST00000269445		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000471166	ENST00000584977		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000471166	ENST00000578396		TCGA	RV	OV	TCGA-24-1426-01A	TNPO3	chr7	128694705	-	DYM	chr18	46690157	-
Frame-shit	ENST00000391993	ENST00000431418		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
In-frame	ENST00000391993	ENST00000392800		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
5CDS-intron	ENST00000391993	ENST00000483959		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
Frame-shit	ENST00000373327	ENST00000431418		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
In-frame	ENST00000373327	ENST00000392800		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
5CDS-intron	ENST00000373327	ENST00000483959		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
Frame-shit	ENST00000391994	ENST00000431418		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
In-frame	ENST00000391994	ENST00000392800		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
5CDS-intron	ENST00000391994	ENST00000483959		TCGA	RV	OV	TCGA-31-1951-01A	TRAF3IP1	chr2	239258049	+	GALNTL5	chr7	151716731	+
Frame-shit	ENST00000336755	ENST00000361005		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
Frame-shit	ENST00000336755	ENST00000342836		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
Frame-shit	ENST00000336755	ENST00000429677		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
Frame-shit	ENST00000336755	ENST00000379405		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
5CDS-intron	ENST00000336755	ENST00000495682		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
5UTR-3CDS	ENST00000534928	ENST00000361005		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
5UTR-3CDS	ENST00000534928	ENST00000342836		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
5UTR-3CDS	ENST00000534928	ENST00000429677		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
5UTR-3CDS	ENST00000534928	ENST00000379405		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
5UTR-intron	ENST00000534928	ENST00000495682		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
3UTR-3CDS	ENST00000461038	ENST00000361005		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
3UTR-3CDS	ENST00000461038	ENST00000342836		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
3UTR-3CDS	ENST00000461038	ENST00000429677		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
3UTR-3CDS	ENST00000461038	ENST00000379405		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
3UTR-intron	ENST00000461038	ENST00000495682		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
intron-3CDS	ENST00000322831	ENST00000361005		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
intron-3CDS	ENST00000322831	ENST00000342836		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
intron-3CDS	ENST00000322831	ENST00000429677		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
intron-3CDS	ENST00000322831	ENST00000379405		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
intron-intron	ENST00000322831	ENST00000495682		TCGA	RV	OV	TCGA-10-0934-01A	ZCCHC7	chr9	37302228	+	PRSS3	chr9	33797827	+
In-frame	ENST00000301178	ENST00000304116		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000301178	ENST00000392173		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000301178	ENST00000355114		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000359092	ENST00000304116		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000359092	ENST00000392173		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000359092	ENST00000355114		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000594880	ENST00000304116		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000594880	ENST00000392173		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000594880	ENST00000355114		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000593513	ENST00000304116		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000593513	ENST00000392173		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000593513	ENST00000355114		TCGA	RV	OV	TCGA-25-1877-01A	AXL	chr19	41762516	+	ZNF565	chr19	36686058	-
In-frame	ENST00000367607	ENST00000367614		TCGA	RV	OV	TCGA-13-0799-01A	CEP350	chr1	180010383	+	TDRD5	chr1	179659831	+
Frame-shit	ENST00000367607	ENST00000444136		TCGA	RV	OV	TCGA-13-0799-01A	CEP350	chr1	180010383	+	TDRD5	chr1	179659831	+
Frame-shit	ENST00000367607	ENST00000294848		TCGA	RV	OV	TCGA-13-0799-01A	CEP350	chr1	180010383	+	TDRD5	chr1	179659831	+
intron-3CDS	ENST00000490141	ENST00000367614		TCGA	RV	OV	TCGA-13-0799-01A	CEP350	chr1	180010383	+	TDRD5	chr1	179659831	+
intron-3CDS	ENST00000490141	ENST00000444136		TCGA	RV	OV	TCGA-13-0799-01A	CEP350	chr1	180010383	+	TDRD5	chr1	179659831	+
intron-3CDS	ENST00000490141	ENST00000294848		TCGA	RV	OV	TCGA-13-0799-01A	CEP350	chr1	180010383	+	TDRD5	chr1	179659831	+
5UTR-3CDS	ENST00000466152	ENST00000550308		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
5UTR-3CDS	ENST00000466152	ENST00000324632		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
In-frame	ENST00000371588	ENST00000550308		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
In-frame	ENST00000371588	ENST00000324632		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
In-frame	ENST00000371582	ENST00000550308		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
In-frame	ENST00000371582	ENST00000324632		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
In-frame	ENST00000371583	ENST00000550308		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
In-frame	ENST00000371583	ENST00000324632		TCGA	RV	OV	TCGA-13-0923-01A	DPM1	chr20	49571723	-	CYP4F12	chr19	15807240	+
5CDS-5UTR	ENST00000322349	ENST00000397817		TCGA	RV	OV	TCGA-04-1362-01A	EEA1	chr12	93285405	-	MPG	chr16	129424	+
5CDS-5UTR	ENST00000322349	ENST00000219431		TCGA	RV	OV	TCGA-04-1362-01A	EEA1	chr12	93285405	-	MPG	chr16	129424	+
5CDS-3UTR	ENST00000322349	ENST00000475280		TCGA	RV	OV	TCGA-04-1362-01A	EEA1	chr12	93285405	-	MPG	chr16	129424	+
5UTR-5UTR	ENST00000547833	ENST00000397817		TCGA	RV	OV	TCGA-04-1362-01A	EEA1	chr12	93285405	-	MPG	chr16	129424	+
5UTR-5UTR	ENST00000547833	ENST00000219431		TCGA	RV	OV	TCGA-04-1362-01A	EEA1	chr12	93285405	-	MPG	chr16	129424	+
5UTR-3UTR	ENST00000547833	ENST00000475280		TCGA	RV	OV	TCGA-04-1362-01A	EEA1	chr12	93285405	-	MPG	chr16	129424	+
5CDS-5UTR	ENST00000337147	ENST00000536543		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-5UTR	ENST00000337147	ENST00000372525		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-3UTR	ENST00000337147	ENST00000468913		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-5UTR	ENST00000367075	ENST00000536543		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-5UTR	ENST00000367075	ENST00000372525		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-3UTR	ENST00000367075	ENST00000468913		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-5UTR	ENST00000392177	ENST00000536543		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-5UTR	ENST00000392177	ENST00000372525		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5CDS-3UTR	ENST00000392177	ENST00000468913		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5UTR-5UTR	ENST00000476189	ENST00000536543		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5UTR-5UTR	ENST00000476189	ENST00000372525		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
5UTR-3UTR	ENST00000476189	ENST00000468913		TCGA	RV	OV	TCGA-13-1487-01A	EZR	chr6	159239114	-	C1orf50	chr1	43239234	+
Frame-shit	ENST00000307650	ENST00000262305		TCGA	RV	OV	TCGA-13-1495-01A	FAM195A	chr16	692249	+	RAB11FIP3	chr16	532525	+
Frame-shit	ENST00000307650	ENST00000457159		TCGA	RV	OV	TCGA-13-1495-01A	FAM195A	chr16	692249	+	RAB11FIP3	chr16	532525	+
Frame-shit	ENST00000307650	ENST00000450428		TCGA	RV	OV	TCGA-13-1495-01A	FAM195A	chr16	692249	+	RAB11FIP3	chr16	532525	+
5UTR-3CDS	ENST00000393029	ENST00000380680		TCGA	RV	OV	TCGA-25-1870-01A	GIPC1	chr19	14602468	-	UBL3	chr13	30351400	-
intron-3CDS	ENST00000393028	ENST00000380680		TCGA	RV	OV	TCGA-25-1870-01A	GIPC1	chr19	14602468	-	UBL3	chr13	30351400	-
intron-3CDS	ENST00000345425	ENST00000380680		TCGA	RV	OV	TCGA-25-1870-01A	GIPC1	chr19	14602468	-	UBL3	chr13	30351400	-
5UTR-3CDS	ENST00000393033	ENST00000380680		TCGA	RV	OV	TCGA-25-1870-01A	GIPC1	chr19	14602468	-	UBL3	chr13	30351400	-
5UTR-3CDS	ENST00000591349	ENST00000380680		TCGA	RV	OV	TCGA-25-1870-01A	GIPC1	chr19	14602468	-	UBL3	chr13	30351400	-
5UTR-3CDS	ENST00000586027	ENST00000380680		TCGA	RV	OV	TCGA-25-1870-01A	GIPC1	chr19	14602468	-	UBL3	chr13	30351400	-
Frame-shit	ENST00000342160	ENST00000376088		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
Frame-shit	ENST00000342160	ENST00000376091		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
Frame-shit	ENST00000342160	ENST00000482218		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
5CDS-intron	ENST00000342160	ENST00000376108		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
5CDS-intron	ENST00000342160	ENST00000307367		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
Frame-shit	ENST00000262854	ENST00000376088		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
Frame-shit	ENST00000262854	ENST00000376091		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
Frame-shit	ENST00000262854	ENST00000482218		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
5CDS-intron	ENST00000262854	ENST00000376108		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
5CDS-intron	ENST00000262854	ENST00000307367		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-3CDS	ENST00000474288	ENST00000376088		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-3CDS	ENST00000474288	ENST00000376091		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-3CDS	ENST00000474288	ENST00000482218		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-intron	ENST00000474288	ENST00000376108		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-intron	ENST00000474288	ENST00000307367		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-3CDS	ENST00000218328	ENST00000376088		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-3CDS	ENST00000218328	ENST00000376091		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-3CDS	ENST00000218328	ENST00000482218		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-intron	ENST00000218328	ENST00000376108		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
intron-intron	ENST00000218328	ENST00000307367		TCGA	RV	OV	TCGA-20-0991-01A	HUWE1	chrX	53600710	-	CLCN5	chrX	49806925	+
In-frame	ENST00000159111	ENST00000262966		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000159111	ENST00000359935		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000159111	ENST00000599840		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000381759	ENST00000262966		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000381759	ENST00000359935		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000381759	ENST00000599840		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000536461	ENST00000262966		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000536461	ENST00000359935		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000536461	ENST00000599840		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
intron-3CDS	ENST00000592175	ENST00000262966		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
intron-3CDS	ENST00000592175	ENST00000359935		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
intron-3CDS	ENST00000592175	ENST00000599840		TCGA	RV	OV	TCGA-10-0926-01A	KDM4B	chr19	5082515	+	MPND	chr19	4345742	+
In-frame	ENST00000295491	ENST00000273920		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
5CDS-5UTR	ENST00000295491	ENST00000509635		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
In-frame	ENST00000507019	ENST00000273920		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
5CDS-5UTR	ENST00000507019	ENST00000509635		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
In-frame	ENST00000507349	ENST00000273920		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
5CDS-5UTR	ENST00000507349	ENST00000509635		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
intron-3CDS	ENST00000509571	ENST00000273920		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
intron-5UTR	ENST00000509571	ENST00000509635		TCGA	RV	OV	TCGA-13-1511-01A	MRPS18C	chr4	84378111	+	ENOPH1	chr4	83369073	+
Frame-shit	ENST00000367584	ENST00000357847		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
Frame-shit	ENST00000367584	ENST00000344492		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
Frame-shit	ENST00000367584	ENST00000275235		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
5CDS-intron	ENST00000367584	ENST00000367598		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
5CDS-intron	ENST00000367584	ENST00000494282		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
5CDS-intron	ENST00000367584	ENST00000367596		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000427704	ENST00000357847		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000427704	ENST00000344492		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000427704	ENST00000275235		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000427704	ENST00000367598		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000427704	ENST00000494282		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000427704	ENST00000367596		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000305766	ENST00000357847		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000305766	ENST00000344492		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000305766	ENST00000275235		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000305766	ENST00000367598		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000305766	ENST00000494282		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000305766	ENST00000367596		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000440869	ENST00000357847		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000440869	ENST00000344492		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000440869	ENST00000275235		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000440869	ENST00000367598		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000440869	ENST00000494282		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000440869	ENST00000367596		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000367582	ENST00000357847		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000367582	ENST00000344492		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000367582	ENST00000275235		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000367582	ENST00000367598		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000367582	ENST00000494282		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000367582	ENST00000367596		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000397980	ENST00000357847		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000397980	ENST00000344492		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000397980	ENST00000275235		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000397980	ENST00000367598		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000397980	ENST00000494282		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000397980	ENST00000367596		TCGA	RV	OV	TCGA-13-1495-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000520500	ENST00000339382		TCGA	RV	OV	TCGA-23-1032-01A	PPP2CB	chr8	30669836	-	PURG	chr8	30854213	-
intron-intron	ENST00000520500	ENST00000475541		TCGA	RV	OV	TCGA-23-1032-01A	PPP2CB	chr8	30669836	-	PURG	chr8	30854213	-
Frame-shit	ENST00000221138	ENST00000339382		TCGA	RV	OV	TCGA-23-1032-01A	PPP2CB	chr8	30669836	-	PURG	chr8	30854213	-
5CDS-intron	ENST00000221138	ENST00000475541		TCGA	RV	OV	TCGA-23-1032-01A	PPP2CB	chr8	30669836	-	PURG	chr8	30854213	-
Frame-shit	ENST00000518564	ENST00000339382		TCGA	RV	OV	TCGA-23-1032-01A	PPP2CB	chr8	30669836	-	PURG	chr8	30854213	-
5CDS-intron	ENST00000518564	ENST00000475541		TCGA	RV	OV	TCGA-23-1032-01A	PPP2CB	chr8	30669836	-	PURG	chr8	30854213	-
5CDS-intron	ENST00000366956	ENST00000282272		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000337207		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000450567		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000328737		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000409153		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000539527		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000409919		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
5CDS-intron	ENST00000366956	ENST00000477852		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000282272		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000337207		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000450567		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000328737		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000409153		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000539527		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000409919		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
3UTR-intron	ENST00000543945	ENST00000477852		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000282272		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000337207		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000450567		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000328737		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000409153		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000539527		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000409919		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
intron-intron	ENST00000491277	ENST00000477852		TCGA	RV	OV	TCGA-23-1122-01A	PTPN14	chr1	214537855	-	ANKRD44	chr2	197832170	-
In-frame	ENST00000374723	ENST00000374767		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
5CDS-intron	ENST00000374723	ENST00000471001		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
In-frame	ENST00000374720	ENST00000374767		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
5CDS-intron	ENST00000374720	ENST00000471001		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
In-frame	ENST00000374724	ENST00000374767		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
5CDS-intron	ENST00000374724	ENST00000471001		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
intron-3CDS	ENST00000343170	ENST00000374767		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
intron-intron	ENST00000343170	ENST00000471001		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
intron-3CDS	ENST00000607692	ENST00000374767		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
intron-intron	ENST00000607692	ENST00000471001		TCGA	RV	OV	TCGA-25-1326-01A	SLC44A1	chr9	108007185	+	NIPSNAP3A	chr9	107513237	+
Frame-shit	ENST00000278412	ENST00000337672		TCGA	RV	OV	TCGA-24-1560-01A	SSRP1	chr11	57101937	-	MED19	chr11	57472701	-
Frame-shit	ENST00000278412	ENST00000431606		TCGA	RV	OV	TCGA-24-1560-01A	SSRP1	chr11	57101937	-	MED19	chr11	57472701	-
In-frame	ENST00000337137	ENST00000348657		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
In-frame	ENST00000337137	ENST00000252115		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-intron	ENST00000337137	ENST00000339677		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-intron	ENST00000337137	ENST00000451060		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-5UTR	ENST00000337137	ENST00000491021		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
In-frame	ENST00000380995	ENST00000348657		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
In-frame	ENST00000380995	ENST00000252115		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-intron	ENST00000380995	ENST00000339677		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-intron	ENST00000380995	ENST00000451060		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-5UTR	ENST00000380995	ENST00000491021		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000407381	ENST00000348657		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000407381	ENST00000252115		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000407381	ENST00000339677		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000407381	ENST00000451060		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-5UTR	ENST00000407381	ENST00000491021		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000355704	ENST00000348657		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000355704	ENST00000252115		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000355704	ENST00000339677		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000355704	ENST00000451060		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-5UTR	ENST00000355704	ENST00000491021		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000472791	ENST00000348657		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000472791	ENST00000252115		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000472791	ENST00000339677		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000472791	ENST00000451060		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
intron-5UTR	ENST00000472791	ENST00000491021		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
In-frame	ENST00000406733	ENST00000348657		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
In-frame	ENST00000406733	ENST00000252115		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-intron	ENST00000406733	ENST00000339677		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-intron	ENST00000406733	ENST00000451060		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
5CDS-5UTR	ENST00000406733	ENST00000491021		TCGA	RV	OV	TCGA-24-1434-01A	TBC1D22A	chr22	47193517	+	POLDIP3	chr22	42983578	-
In-frame	ENST00000265069	ENST00000354725		TCGA	RV	OV	TCGA-24-1470-01A	ZFR	chr5	32444335	-	SND1	chr7	127527955	+
5CDS-intron	ENST00000265069	ENST00000467238		TCGA	RV	OV	TCGA-24-1470-01A	ZFR	chr5	32444335	-	SND1	chr7	127527955	+
intron-3CDS	ENST00000510369	ENST00000354725		TCGA	RV	OV	TCGA-24-1470-01A	ZFR	chr5	32444335	-	SND1	chr7	127527955	+
intron-intron	ENST00000510369	ENST00000467238		TCGA	RV	OV	TCGA-24-1470-01A	ZFR	chr5	32444335	-	SND1	chr7	127527955	+
In-frame	ENST00000216194	ENST00000417718		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
Frame-shit	ENST00000216194	ENST00000216200		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
In-frame	ENST00000216194	ENST00000404171		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
In-frame	ENST00000454266	ENST00000417718		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
Frame-shit	ENST00000454266	ENST00000216200		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
In-frame	ENST00000454266	ENST00000404171		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
In-frame	ENST00000342312	ENST00000417718		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
Frame-shit	ENST00000342312	ENST00000216200		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
In-frame	ENST00000342312	ENST00000404171		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
intron-3CDS	ENST00000480775	ENST00000417718		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
intron-3CDS	ENST00000480775	ENST00000216200		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
intron-3CDS	ENST00000480775	ENST00000404171		TCGA	RV	OV	TCGA-61-2111-01A	ADSL	chr22	40742715	+	PVALB	chr22	37196962	-
In-frame	ENST00000259512	ENST00000341865		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
5CDS-intron	ENST00000259512	ENST00000356542		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
In-frame	ENST00000405944	ENST00000341865		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
5CDS-intron	ENST00000405944	ENST00000356542		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
In-frame	ENST00000419562	ENST00000341865		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
5CDS-intron	ENST00000419562	ENST00000356542		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
intron-3CDS	ENST00000519018	ENST00000341865		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
intron-intron	ENST00000519018	ENST00000356542		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
intron-3CDS	ENST00000523036	ENST00000341865		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
intron-intron	ENST00000523036	ENST00000356542		TCGA	RV	OV	TCGA-24-1604-01A	DERL1	chr8	124054210	-	C6orf132	chr6	42078029	-
Frame-shit	ENST00000356554	ENST00000256652		TCGA	RV	OV	TCGA-13-1512-01A	MAN1A2	chr1	118045592	+	CD101	chr1	117576482	+
Frame-shit	ENST00000356554	ENST00000369470		TCGA	RV	OV	TCGA-13-1512-01A	MAN1A2	chr1	118045592	+	CD101	chr1	117576482	+
5CDS-3UTR	ENST00000356554	ENST00000467588		TCGA	RV	OV	TCGA-13-1512-01A	MAN1A2	chr1	118045592	+	CD101	chr1	117576482	+
intron-3CDS	ENST00000482811	ENST00000256652		TCGA	RV	OV	TCGA-13-1512-01A	MAN1A2	chr1	118045592	+	CD101	chr1	117576482	+
intron-3CDS	ENST00000482811	ENST00000369470		TCGA	RV	OV	TCGA-13-1512-01A	MAN1A2	chr1	118045592	+	CD101	chr1	117576482	+
intron-3UTR	ENST00000482811	ENST00000467588		TCGA	RV	OV	TCGA-13-1512-01A	MAN1A2	chr1	118045592	+	CD101	chr1	117576482	+
Frame-shit	ENST00000369026	ENST00000368985		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
Frame-shit	ENST00000369026	ENST00000448301		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
5CDS-5UTR	ENST00000369026	ENST00000480760		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
intron-3CDS	ENST00000464132	ENST00000368985		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
intron-3CDS	ENST00000464132	ENST00000448301		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
intron-5UTR	ENST00000464132	ENST00000480760		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
Frame-shit	ENST00000307940	ENST00000368985		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
Frame-shit	ENST00000307940	ENST00000448301		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
5CDS-5UTR	ENST00000307940	ENST00000480760		TCGA	RV	OV	TCGA-24-1469-01A	MCL1	chr1	150551319	-	CTSS	chr1	150720355	-
In-frame	ENST00000358506	ENST00000327757		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
In-frame	ENST00000358506	ENST00000422425		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-intron	ENST00000358506	ENST00000541605		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-intron	ENST00000358506	ENST00000329020		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
In-frame	ENST00000296122	ENST00000327757		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
In-frame	ENST00000296122	ENST00000422425		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-intron	ENST00000296122	ENST00000541605		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-intron	ENST00000296122	ENST00000329020		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
In-frame	ENST00000395366	ENST00000327757		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
In-frame	ENST00000395366	ENST00000422425		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-intron	ENST00000395366	ENST00000541605		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-intron	ENST00000395366	ENST00000329020		TCGA	RV	OV	TCGA-24-1431-01A	PPP1CB	chr2	28999848	+	PLB1	chr2	28796064	+
5CDS-5UTR	ENST00000452898	ENST00000362032		TCGA	RV	OV	TCGA-09-1669-01A	RASA2	chr3	141235273	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000286364	ENST00000362032		TCGA	RV	OV	TCGA-09-1669-01A	RASA2	chr3	141235273	+	SUCNR1	chr3	151597640	+
intron-5UTR	ENST00000509118	ENST00000362032		TCGA	RV	OV	TCGA-09-1669-01A	RASA2	chr3	141235273	+	SUCNR1	chr3	151597640	+
Frame-shit	ENST00000373068	ENST00000372954		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000393608		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000541172		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000357558		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000325721		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000538431		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000277465		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000372948		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373068	ENST00000372938		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
5CDS-intron	ENST00000373068	ENST00000476727		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000372954		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000393608		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000541172		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000357558		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000325721		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000538431		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000277465		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000372948		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
Frame-shit	ENST00000373069	ENST00000372938		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
5CDS-intron	ENST00000373069	ENST00000476727		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000372954		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000393608		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000541172		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000357558		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000325721		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000538431		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000277465		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000372948		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000432073	ENST00000372938		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-intron	ENST00000432073	ENST00000476727		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000372954		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000393608		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000541172		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000357558		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000325721		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000538431		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000277465		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000372948		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373066	ENST00000372938		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-intron	ENST00000373066	ENST00000476727		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000372954		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000393608		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000541172		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000357558		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000325721		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000538431		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000277465		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000372948		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000373064	ENST00000372938		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-intron	ENST00000373064	ENST00000476727		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000372954		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000393608		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000541172		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000357558		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000325721		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000538431		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000277465		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000372948		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-3CDS	ENST00000433501	ENST00000372938		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
intron-intron	ENST00000433501	ENST00000476727		TCGA	RV	OV	TCGA-24-2293-01A	SLC25A25	chr9	130830859	+	CIZ1	chr9	130932386	-
5UTR-3CDS	ENST00000357103	ENST00000305108		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000357103	ENST00000397265		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000357103	ENST00000542920		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
5UTR-5UTR	ENST00000357103	ENST00000433832		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
5UTR-intron	ENST00000357103	ENST00000537416		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000544470	ENST00000305108		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000544470	ENST00000397265		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000544470	ENST00000542920		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000544470	ENST00000433832		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
intron-intron	ENST00000544470	ENST00000537416		TCGA	RV	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800357	+	NINJ2	chr12	675344	-
Frame-shit	ENST00000314136	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
5CDS-intron	ENST00000314136	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
Frame-shit	ENST00000369119	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
5CDS-intron	ENST00000369119	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
intron-3CDS	ENST00000369116	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
intron-intron	ENST00000369116	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
intron-3CDS	ENST00000436748	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
intron-intron	ENST00000436748	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
Frame-shit	ENST00000369114	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
5CDS-intron	ENST00000369114	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
intron-3CDS	ENST00000369115	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
intron-intron	ENST00000369115	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
Frame-shit	ENST00000533654	ENST00000271651		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
5CDS-intron	ENST00000533654	ENST00000480670		TCGA	RV	OV	TCGA-61-1918-01A	ANP32E	chr1	150202906	-	CTSK	chr1	150769374	-
In-frame	ENST00000351231	ENST00000265563		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
In-frame	ENST00000351231	ENST00000454963		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
In-frame	ENST00000351231	ENST00000296446		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
In-frame	ENST00000302506	ENST00000265563		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
In-frame	ENST00000302506	ENST00000454963		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
In-frame	ENST00000302506	ENST00000296446		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
5UTR-3CDS	ENST00000459900	ENST00000265563		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
5UTR-3CDS	ENST00000459900	ENST00000454963		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
5UTR-3CDS	ENST00000459900	ENST00000296446		TCGA	RV	OV	TCGA-36-1575-01A	CDC25A	chr3	48215774	-	PRKAR2A	chr3	48820525	-
Frame-shit	ENST00000373325	ENST00000373458		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
Frame-shit	ENST00000373325	ENST00000373461		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
5CDS-intron	ENST00000373325	ENST00000373459		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
Frame-shit	ENST00000252011	ENST00000373458		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
Frame-shit	ENST00000252011	ENST00000373461		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
5CDS-intron	ENST00000252011	ENST00000373459		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
Frame-shit	ENST00000373323	ENST00000373458		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
Frame-shit	ENST00000373323	ENST00000373461		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
5CDS-intron	ENST00000373323	ENST00000373459		TCGA	RV	OV	TCGA-13-A5FT-01A	DHX35	chr20	37631511	+	VSTM2L	chr20	36560037	+
In-frame	ENST00000309971	ENST00000393533		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000309971	ENST00000372814		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000309971	ENST00000351030		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000309971	ENST00000604420		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000535026		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000448249		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000393527		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000434106		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000546203		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000372791		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000372807		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000309971	ENST00000444119		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000372770	ENST00000393533		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000372770	ENST00000372814		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000372770	ENST00000351030		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
In-frame	ENST00000372770	ENST00000604420		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000535026		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000448249		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000393527		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000434106		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000546203		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000372791		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000372807		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5CDS-intron	ENST00000372770	ENST00000444119		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-3CDS	ENST00000539582	ENST00000393533		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-3CDS	ENST00000539582	ENST00000372814		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-3CDS	ENST00000539582	ENST00000351030		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-3CDS	ENST00000539582	ENST00000604420		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000535026		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000448249		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000393527		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000434106		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000546203		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000372791		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000372807		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-intron	ENST00000539582	ENST00000444119		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-3CDS	ENST00000494417	ENST00000393533		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-3CDS	ENST00000494417	ENST00000372814		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-3CDS	ENST00000494417	ENST00000351030		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-3CDS	ENST00000494417	ENST00000604420		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000535026		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000448249		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000393527		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000434106		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000546203		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000372791		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000372807		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
intron-intron	ENST00000494417	ENST00000444119		TCGA	RV	OV	TCGA-61-1998-01A	GLE1	chr9	131267183	+	ODF2	chr9	131254705	+
5UTR-3CDS	ENST00000383737	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000383737	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-intron	ENST00000383737	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000395734	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000395734	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-intron	ENST00000395734	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000426837	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000426837	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-intron	ENST00000426837	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000360240	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000360240	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-intron	ENST00000360240	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000439356	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-3CDS	ENST00000439356	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
5UTR-intron	ENST00000439356	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000264724	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000264724	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-intron	ENST00000264724	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000420772	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000420772	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-intron	ENST00000420772	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000441748	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000441748	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-intron	ENST00000441748	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000462206	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000462206	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-intron	ENST00000462206	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000434267	ENST00000339777		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-3CDS	ENST00000434267	ENST00000425921		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
intron-intron	ENST00000434267	ENST00000537733		TCGA	RV	OV	TCGA-13-0801-01A	MAP4	chr3	48130263	-	LRRC43	chr12	122674677	+
Frame-shit	ENST00000309993	ENST00000383202		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
Frame-shit	ENST00000309993	ENST00000236698		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
Frame-shit	ENST00000309993	ENST00000434713		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
5CDS-intron	ENST00000309993	ENST00000480733		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
5CDS-intron	ENST00000309993	ENST00000536929		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
intron-3CDS	ENST00000434835	ENST00000383202		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
intron-3CDS	ENST00000434835	ENST00000236698		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
intron-3CDS	ENST00000434835	ENST00000434713		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
intron-intron	ENST00000434835	ENST00000480733		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
intron-intron	ENST00000434835	ENST00000536929		TCGA	RV	OV	TCGA-13-1511-01A	MSL2	chr3	135913814	-	STAG1	chr3	136068205	-
Frame-shit	ENST00000306846	ENST00000339788		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000306846	ENST00000320816		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000306846	ENST00000545653		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
In-frame	ENST00000306846	ENST00000509337		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
5CDS-intron	ENST00000306846	ENST00000512525		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000436644	ENST00000339788		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000436644	ENST00000320816		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000436644	ENST00000545653		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
In-frame	ENST00000436644	ENST00000509337		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
5CDS-intron	ENST00000436644	ENST00000512525		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
In-frame	ENST00000338972	ENST00000339788		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
In-frame	ENST00000338972	ENST00000320816		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
In-frame	ENST00000338972	ENST00000545653		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000338972	ENST00000509337		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
5CDS-intron	ENST00000338972	ENST00000512525		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000514514	ENST00000339788		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000514514	ENST00000320816		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000514514	ENST00000545653		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
In-frame	ENST00000514514	ENST00000509337		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
5CDS-intron	ENST00000514514	ENST00000512525		TCGA	RV	OV	TCGA-13-1506-01A	PAIP1	chr5	43555932	-	DAB2	chr5	39375186	-
Frame-shit	ENST00000367584	ENST00000357847		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
Frame-shit	ENST00000367584	ENST00000344492		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
Frame-shit	ENST00000367584	ENST00000275235		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
5CDS-intron	ENST00000367584	ENST00000367598		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
5CDS-intron	ENST00000367584	ENST00000494282		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
5CDS-intron	ENST00000367584	ENST00000367596		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000427704	ENST00000357847		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000427704	ENST00000344492		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000427704	ENST00000275235		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000427704	ENST00000367598		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000427704	ENST00000494282		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000427704	ENST00000367596		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000305766	ENST00000357847		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000305766	ENST00000344492		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000305766	ENST00000275235		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000305766	ENST00000367598		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000305766	ENST00000494282		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000305766	ENST00000367596		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000440869	ENST00000357847		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000440869	ENST00000344492		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000440869	ENST00000275235		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000440869	ENST00000367598		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000440869	ENST00000494282		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000440869	ENST00000367596		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000367582	ENST00000357847		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000367582	ENST00000344492		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000367582	ENST00000275235		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000367582	ENST00000367598		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000367582	ENST00000494282		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000367582	ENST00000367596		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000397980	ENST00000357847		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000397980	ENST00000344492		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-3CDS	ENST00000397980	ENST00000275235		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000397980	ENST00000367598		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000397980	ENST00000494282		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
intron-intron	ENST00000397980	ENST00000367596		TCGA	RV	OV	TCGA-23-1107-01A	PHACTR2	chr6	143858344	+	AIG1	chr6	143605247	+
In-frame	ENST00000313486	ENST00000304992		TCGA	RV	OV	TCGA-36-1581-01A	PITPNA	chr17	1444860	-	PRPF8	chr17	1565447	-
In-frame	ENST00000313486	ENST00000572621		TCGA	RV	OV	TCGA-36-1581-01A	PITPNA	chr17	1444860	-	PRPF8	chr17	1565447	-
5CDS-intron	ENST00000313486	ENST00000575116		TCGA	RV	OV	TCGA-36-1581-01A	PITPNA	chr17	1444860	-	PRPF8	chr17	1565447	-
In-frame	ENST00000539476	ENST00000304992		TCGA	RV	OV	TCGA-36-1581-01A	PITPNA	chr17	1444860	-	PRPF8	chr17	1565447	-
In-frame	ENST00000539476	ENST00000572621		TCGA	RV	OV	TCGA-36-1581-01A	PITPNA	chr17	1444860	-	PRPF8	chr17	1565447	-
5CDS-intron	ENST00000539476	ENST00000575116		TCGA	RV	OV	TCGA-36-1581-01A	PITPNA	chr17	1444860	-	PRPF8	chr17	1565447	-
Frame-shit	ENST00000275262	ENST00000337019		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000275262	ENST00000366889		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000275262	ENST00000366888		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000275262	ENST00000542669		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000392127	ENST00000337019		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000392127	ENST00000366889		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000392127	ENST00000366888		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000392127	ENST00000542669		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000453779	ENST00000337019		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000453779	ENST00000366889		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000453779	ENST00000366888		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000453779	ENST00000542669		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000361752	ENST00000337019		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000361752	ENST00000366889		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000361752	ENST00000366888		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000361752	ENST00000542669		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000361195	ENST00000337019		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000361195	ENST00000366889		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000361195	ENST00000366888		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000361195	ENST00000542669		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000424802	ENST00000337019		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000424802	ENST00000366889		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000424802	ENST00000366888		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000424802	ENST00000542669		TCGA	RV	OV	TCGA-24-1842-01A	QKI	chr6	163899928	+	PACRG	chr6	163733811	+
In-frame	ENST00000373371	ENST00000435213		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
Frame-shit	ENST00000373371	ENST00000314904		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
In-frame	ENST00000373371	ENST00000373387		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
5CDS-3UTR	ENST00000373371	ENST00000496711		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
In-frame	ENST00000373352	ENST00000435213		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
Frame-shit	ENST00000373352	ENST00000314904		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
In-frame	ENST00000373352	ENST00000373387		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
5CDS-3UTR	ENST00000373352	ENST00000496711		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
In-frame	ENST00000373360	ENST00000435213		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
Frame-shit	ENST00000373360	ENST00000314904		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
In-frame	ENST00000373360	ENST00000373387		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
5CDS-3UTR	ENST00000373360	ENST00000496711		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
3UTR-3CDS	ENST00000485806	ENST00000435213		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
3UTR-3CDS	ENST00000485806	ENST00000314904		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
3UTR-3CDS	ENST00000485806	ENST00000373387		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
3UTR-3UTR	ENST00000485806	ENST00000496711		TCGA	RV	OV	TCGA-25-1630-01A	SLC2A8	chr9	130167270	+	GARNL3	chr9	130151183	+
Frame-shit	ENST00000327443	ENST00000267103		TCGA	RV	OV	TCGA-13-A5FT-01A	SP1	chr12	53803345	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000327443	ENST00000548632		TCGA	RV	OV	TCGA-13-A5FT-01A	SP1	chr12	53803345	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000327443	ENST00000549488		TCGA	RV	OV	TCGA-13-A5FT-01A	SP1	chr12	53803345	+	C12orf10	chr12	53699692	+
Frame-shit	ENST00000426431	ENST00000267103		TCGA	RV	OV	TCGA-13-A5FT-01A	SP1	chr12	53803345	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000426431	ENST00000548632		TCGA	RV	OV	TCGA-13-A5FT-01A	SP1	chr12	53803345	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000426431	ENST00000549488		TCGA	RV	OV	TCGA-13-A5FT-01A	SP1	chr12	53803345	+	C12orf10	chr12	53699692	+
Frame-shit	ENST00000291574	ENST00000327946		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
5CDS-intron	ENST00000291574	ENST00000536331		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
5CDS-intron	ENST00000291574	ENST00000552278		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
Frame-shit	ENST00000380221	ENST00000327946		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
5CDS-intron	ENST00000380221	ENST00000536331		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
5CDS-intron	ENST00000380221	ENST00000552278		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
intron-3CDS	ENST00000483973	ENST00000327946		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
intron-intron	ENST00000483973	ENST00000536331		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
intron-intron	ENST00000483973	ENST00000552278		TCGA	RV	OV	TCGA-13-0893-01B	TRAPPC10	chr21	45432441	+	GRID1	chr10	87628937	-
Frame-shit	ENST00000307630	ENST00000287263		TCGA	RV	OV	TCGA-13-0908-01B	YWHAG	chr7	75988039	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000307630	ENST00000330843		TCGA	RV	OV	TCGA-13-0908-01B	YWHAG	chr7	75988039	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000307630	ENST00000522727		TCGA	RV	OV	TCGA-13-0908-01B	YWHAG	chr7	75988039	-	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000307630	ENST00000523182		TCGA	RV	OV	TCGA-13-0908-01B	YWHAG	chr7	75988039	-	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000307630	ENST00000524118		TCGA	RV	OV	TCGA-13-0908-01B	YWHAG	chr7	75988039	-	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000446326	ENST00000284262		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
5CDS-3UTR	ENST00000446326	ENST00000563609		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
In-frame	ENST00000289816	ENST00000284262		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
5CDS-3UTR	ENST00000289816	ENST00000563609		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
Frame-shit	ENST00000568064	ENST00000284262		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
5CDS-3UTR	ENST00000568064	ENST00000563609		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
In-frame	ENST00000443381	ENST00000284262		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
5CDS-3UTR	ENST00000443381	ENST00000563609		TCGA	RV	OV	TCGA-20-1684-01A	ZNF276	chr16	89790117	+	JPH3	chr16	87730186	+
Frame-shit	ENST00000374023	ENST00000287152		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000394362		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000373213		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000373216		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000229913		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000373215		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000538893		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374023	ENST00000541946		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-intron	ENST00000374023	ENST00000465719		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
Frame-shit	ENST00000374026	ENST00000287152		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000394362		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000373213		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000373216		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000229913		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000373215		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000538893		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-5UTR	ENST00000374026	ENST00000541946		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5CDS-intron	ENST00000374026	ENST00000465719		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-3CDS	ENST00000374021	ENST00000287152		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000394362		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000373213		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000373216		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000229913		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000373215		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000538893		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-5UTR	ENST00000374021	ENST00000541946		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
intron-intron	ENST00000374021	ENST00000465719		TCGA	RV	OV	TCGA-61-2008-02A	C6orf106	chr6	34664223	-	KIF6	chr6	39398937	-
5UTR-3CDS	ENST00000402061	ENST00000401548		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000402061	ENST00000540833		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000402061	ENST00000400107		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000402061	ENST00000300398		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000402061	ENST00000540880		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-3UTR	ENST00000402061	ENST00000476893		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-3CDS	ENST00000255784	ENST00000401548		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000255784	ENST00000540833		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000255784	ENST00000400107		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000255784	ENST00000300398		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-intron	ENST00000255784	ENST00000540880		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
5UTR-3UTR	ENST00000255784	ENST00000476893		TCGA	RV	OV	TCGA-13-0887-01A	CCDC134	chr22	42196770	+	MEI1	chr22	42189833	+
Frame-shit	ENST00000405201	ENST00000308736		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5CDS-intron	ENST00000405201	ENST00000544745		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
Frame-shit	ENST00000404621	ENST00000308736		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5CDS-intron	ENST00000404621	ENST00000544745		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5UTR-3CDS	ENST00000404121	ENST00000308736		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5UTR-intron	ENST00000404121	ENST00000544745		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
Frame-shit	ENST00000356219	ENST00000308736		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5CDS-intron	ENST00000356219	ENST00000544745		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
Frame-shit	ENST00000397355	ENST00000308736		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5CDS-intron	ENST00000397355	ENST00000544745		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
Frame-shit	ENST00000429285	ENST00000308736		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5CDS-intron	ENST00000429285	ENST00000544745		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	124970987	-	DHX37	chr12	125470811	-
5UTR-5UTR	ENST00000360540	ENST00000367155		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000360540	ENST00000367156		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000360540	ENST00000539253		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000360540	ENST00000537168		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000360540	ENST00000460687		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000360540	ENST00000606529		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5CDS-5UTR	ENST00000544451	ENST00000367155		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5CDS-5UTR	ENST00000544451	ENST00000367156		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5CDS-5UTR	ENST00000544451	ENST00000539253		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5CDS-intron	ENST00000544451	ENST00000537168		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5CDS-intron	ENST00000544451	ENST00000460687		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5CDS-intron	ENST00000544451	ENST00000606529		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000519559	ENST00000367155		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000519559	ENST00000367156		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000519559	ENST00000539253		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000519559	ENST00000537168		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000519559	ENST00000460687		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000519559	ENST00000606529		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000522514	ENST00000367155		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000522514	ENST00000367156		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000522514	ENST00000539253		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000522514	ENST00000537168		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000522514	ENST00000460687		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000522514	ENST00000606529		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000521344	ENST00000367155		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000521344	ENST00000367156		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-5UTR	ENST00000521344	ENST00000539253		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000521344	ENST00000537168		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000521344	ENST00000460687		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
5UTR-intron	ENST00000521344	ENST00000606529		TCGA	RV	OV	TCGA-29-2427-01A	PCMTD1	chr8	52811490	-	KLHDC8A	chr1	205312921	-
Frame-shit	ENST00000455789	ENST00000392552		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
Frame-shit	ENST00000455789	ENST00000392551		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
Frame-shit	ENST00000455789	ENST00000295500		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
5CDS-intron	ENST00000455789	ENST00000459996		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000310015	ENST00000392552		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000310015	ENST00000392551		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000310015	ENST00000295500		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
5CDS-intron	ENST00000310015	ENST00000459996		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000418194	ENST00000392552		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000418194	ENST00000392551		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000418194	ENST00000295500		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
5CDS-intron	ENST00000418194	ENST00000459996		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
intron-3CDS	ENST00000483084	ENST00000392552		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
intron-3CDS	ENST00000483084	ENST00000392551		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
intron-3CDS	ENST00000483084	ENST00000295500		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
intron-intron	ENST00000483084	ENST00000459996		TCGA	RV	OV	TCGA-09-1662-01A	SP3	chr2	174819601	-	GPR155	chr2	175318569	-
In-frame	ENST00000543117	ENST00000283928		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000543117	ENST00000466516		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
In-frame	ENST00000265393	ENST00000283928		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000265393	ENST00000466516		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
In-frame	ENST00000409980	ENST00000283928		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000409980	ENST00000466516		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
5UTR-3CDS	ENST00000433216	ENST00000283928		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
5UTR-intron	ENST00000433216	ENST00000466516		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
In-frame	ENST00000396319	ENST00000283928		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000396319	ENST00000466516		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
intron-3CDS	ENST00000494033	ENST00000283928		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
intron-intron	ENST00000494033	ENST00000466516		TCGA	RV	OV	TCGA-24-1424-01A	TAX1BP1	chr7	27797752	+	JAZF1	chr7	28031600	-
Frame-shit	ENST00000533861	ENST00000306238		TCGA	RV	OV	TCGA-24-2026-01A	TMEM179B	chr11	62554999	+	SCGB1D1	chr11	61959528	+
Frame-shit	ENST00000333449	ENST00000306238		TCGA	RV	OV	TCGA-24-2026-01A	TMEM179B	chr11	62554999	+	SCGB1D1	chr11	61959528	+
In-frame	ENST00000352645	ENST00000417961		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
Frame-shit	ENST00000352645	ENST00000361573		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
In-frame	ENST00000352645	ENST00000541138		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
Frame-shit	ENST00000352645	ENST00000539601		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
5CDS-3UTR	ENST00000352645	ENST00000490250		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
In-frame	ENST00000351589	ENST00000417961		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
Frame-shit	ENST00000351589	ENST00000361573		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
In-frame	ENST00000351589	ENST00000541138		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
Frame-shit	ENST00000351589	ENST00000539601		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
5CDS-3UTR	ENST00000351589	ENST00000490250		TCGA	RV	OV	TCGA-61-2111-01A	ZC3H7B	chr22	41742212	+	SLC9A8	chr20	48504366	+
Frame-shit	ENST00000354700	ENST00000435064		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
Frame-shit	ENST00000354700	ENST00000411962		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5CDS-5UTR	ENST00000354700	ENST00000462432		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5CDS-5UTR	ENST00000354700	ENST00000540437		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5CDS-5UTR	ENST00000354700	ENST00000421495		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5CDS-5UTR	ENST00000354700	ENST00000419704		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5CDS-5UTR	ENST00000354700	ENST00000450926		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5CDS-5UTR	ENST00000354700	ENST00000545578		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-3CDS	ENST00000353662	ENST00000435064		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-3CDS	ENST00000353662	ENST00000411962		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-5UTR	ENST00000353662	ENST00000462432		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-5UTR	ENST00000353662	ENST00000540437		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-5UTR	ENST00000353662	ENST00000421495		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-5UTR	ENST00000353662	ENST00000419704		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-5UTR	ENST00000353662	ENST00000450926		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-5UTR	ENST00000353662	ENST00000545578		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-3CDS	ENST00000379037	ENST00000435064		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-3CDS	ENST00000379037	ENST00000411962		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-5UTR	ENST00000379037	ENST00000462432		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-5UTR	ENST00000379037	ENST00000540437		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-5UTR	ENST00000379037	ENST00000421495		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-5UTR	ENST00000379037	ENST00000419704		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-5UTR	ENST00000379037	ENST00000450926		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
intron-5UTR	ENST00000379037	ENST00000545578		TCGA	RV	OV	TCGA-13-1512-01A	ACAP3	chr1	1243149	-	CPSF3L	chr1	1250342	-
5UTR-3CDS	ENST00000378330	ENST00000369261		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-intron	ENST00000378330	ENST00000536676		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-5UTR	ENST00000378330	ENST00000544166		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-intron	ENST00000378330	ENST00000539200		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-3CDS	ENST00000301030	ENST00000369261		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-intron	ENST00000301030	ENST00000536676		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-5UTR	ENST00000301030	ENST00000544166		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
5UTR-intron	ENST00000301030	ENST00000539200		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-3CDS	ENST00000563291	ENST00000369261		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000563291	ENST00000536676		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-5UTR	ENST00000563291	ENST00000544166		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000563291	ENST00000539200		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-3CDS	ENST00000567736	ENST00000369261		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000567736	ENST00000536676		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-5UTR	ENST00000567736	ENST00000544166		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
intron-intron	ENST00000567736	ENST00000539200		TCGA	RV	OV	TCGA-24-1558-01A	ANKRD11	chr16	89556653	-	KLHL32	chr6	97489368	+
Frame-shit	ENST00000366603	ENST00000366647		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
Frame-shit	ENST00000366603	ENST00000366646		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
5CDS-intron	ENST00000366603	ENST00000469332		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
Frame-shit	ENST00000264183	ENST00000366647		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
Frame-shit	ENST00000264183	ENST00000366646		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
5CDS-intron	ENST00000264183	ENST00000469332		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
Frame-shit	ENST00000349213	ENST00000366647		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
Frame-shit	ENST00000349213	ENST00000366646		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
5CDS-intron	ENST00000349213	ENST00000469332		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
intron-3CDS	ENST00000494543	ENST00000366647		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
intron-3CDS	ENST00000494543	ENST00000366646		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
intron-intron	ENST00000494543	ENST00000469332		TCGA	RV	OV	TCGA-13-1512-01A	ARID4B	chr1	235490229	-	GNPAT	chr1	231398469	+
In-frame	ENST00000367160	ENST00000456435		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367160	ENST00000318967		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367160	ENST00000435409		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367160	ENST00000512605		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
5CDS-3UTR	ENST00000367160	ENST00000476843		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367161	ENST00000456435		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367161	ENST00000318967		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367161	ENST00000435409		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367161	ENST00000512605		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
5CDS-3UTR	ENST00000367161	ENST00000476843		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367162	ENST00000456435		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367162	ENST00000318967		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367162	ENST00000435409		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
In-frame	ENST00000367162	ENST00000512605		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
5CDS-3UTR	ENST00000367162	ENST00000476843		TCGA	RV	OV	TCGA-13-A5FT-01A	DSTYK	chr1	205180399	-	INTS3	chr1	153730048	+
5CDS-5UTR	ENST00000260257	ENST00000526180		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-intron	ENST00000260257	ENST00000533280		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-intron	ENST00000260257	ENST00000525823		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-5UTR	ENST00000260257	ENST00000533475		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-5UTR	ENST00000260257	ENST00000527950		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-intron	ENST00000260257	ENST00000227251		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-5UTR	ENST00000260257	ENST00000531198		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5CDS-intron	ENST00000260257	ENST00000533971		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-5UTR	ENST00000542429	ENST00000526180		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-intron	ENST00000542429	ENST00000533280		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-intron	ENST00000542429	ENST00000525823		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-5UTR	ENST00000542429	ENST00000533475		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-5UTR	ENST00000542429	ENST00000527950		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-intron	ENST00000542429	ENST00000227251		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-5UTR	ENST00000542429	ENST00000531198		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-intron	ENST00000542429	ENST00000533971		TCGA	RV	OV	TCGA-61-1740-01A	FDXACB1	chr11	111749685	-	CRYAB	chr11	111782646	-
5UTR-3CDS	ENST00000318789	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318789	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318789	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318789	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318789	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3CDS	ENST00000475937	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000475937	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000475937	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000475937	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000475937	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3CDS	ENST00000493089	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000493089	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000493089	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000493089	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000493089	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3CDS	ENST00000484350	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000484350	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000484350	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000484350	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000484350	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3CDS	ENST00000318779	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318779	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318779	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318779	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3UTR	ENST00000318779	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3CDS	ENST00000491238	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000491238	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000491238	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000491238	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000491238	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3CDS	ENST00000498215	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000498215	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000498215	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000498215	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000498215	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3CDS	ENST00000468577	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000468577	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000468577	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000468577	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000468577	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3CDS	ENST00000472382	ENST00000319449		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000472382	ENST00000377001		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000472382	ENST00000437570		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000472382	ENST00000393438		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
intron-3UTR	ENST00000472382	ENST00000508797		TCGA	RV	OV	TCGA-13-0916-01A	FOXP1	chr3	71348971	-	RUFY1	chr5	179036377	+
5UTR-3CDS	ENST00000434000	ENST00000318217		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5UTR-3CDS	ENST00000434000	ENST00000394649		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5UTR-intron	ENST00000434000	ENST00000579584		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5UTR-intron	ENST00000434000	ENST00000584232		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5UTR-intron	ENST00000434000	ENST00000583621		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
In-frame	ENST00000591680	ENST00000318217		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
Frame-shit	ENST00000591680	ENST00000394649		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000591680	ENST00000579584		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000591680	ENST00000584232		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000591680	ENST00000583621		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000586265	ENST00000318217		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000586265	ENST00000394649		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
intron-intron	ENST00000586265	ENST00000579584		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
intron-intron	ENST00000586265	ENST00000584232		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
intron-intron	ENST00000586265	ENST00000583621		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
In-frame	ENST00000592154	ENST00000318217		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
Frame-shit	ENST00000592154	ENST00000394649		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000592154	ENST00000579584		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000592154	ENST00000584232		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000592154	ENST00000583621		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
In-frame	ENST00000588554	ENST00000318217		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
Frame-shit	ENST00000588554	ENST00000394649		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000588554	ENST00000579584		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000588554	ENST00000584232		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000588554	ENST00000583621		TCGA	RV	OV	TCGA-24-1424-01A	GPATCH8	chr17	42580694	-	MYO1D	chr17	30821933	-
In-frame	ENST00000323798	ENST00000433218		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000323798	ENST00000221222		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000323798	ENST00000539827		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000323798	ENST00000392351		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000323798	ENST00000594794		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000323798	ENST00000594439		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000323798	ENST00000542541		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000323798	ENST00000355887		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000263276	ENST00000433218		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000263276	ENST00000221222		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000263276	ENST00000539827		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
In-frame	ENST00000263276	ENST00000392351		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000263276	ENST00000594794		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000263276	ENST00000594439		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000263276	ENST00000542541		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5CDS-intron	ENST00000263276	ENST00000355887		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000541188	ENST00000433218		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000541188	ENST00000221222		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000541188	ENST00000539827		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000541188	ENST00000392351		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000541188	ENST00000594794		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000541188	ENST00000594439		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000541188	ENST00000542541		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000541188	ENST00000355887		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000544287	ENST00000433218		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000544287	ENST00000221222		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000544287	ENST00000539827		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000544287	ENST00000392351		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000544287	ENST00000594794		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000544287	ENST00000594439		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000544287	ENST00000542541		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000544287	ENST00000355887		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000540532	ENST00000433218		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000540532	ENST00000221222		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000540532	ENST00000539827		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-3CDS	ENST00000540532	ENST00000392351		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000540532	ENST00000594794		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000540532	ENST00000594439		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000540532	ENST00000542541		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
intron-intron	ENST00000540532	ENST00000355887		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-3CDS	ENST00000457974	ENST00000433218		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-3CDS	ENST00000457974	ENST00000221222		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-3CDS	ENST00000457974	ENST00000539827		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-3CDS	ENST00000457974	ENST00000392351		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-intron	ENST00000457974	ENST00000594794		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-intron	ENST00000457974	ENST00000594439		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-intron	ENST00000457974	ENST00000542541		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
5UTR-intron	ENST00000457974	ENST00000355887		TCGA	RV	OV	TCGA-29-1699-01A	GYS1	chr19	49494559	-	HOMER3	chr19	19045219	-
Frame-shit	ENST00000378623	ENST00000395290		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-intron	ENST00000378623	ENST00000358597		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-5UTR	ENST00000378623	ENST00000395292		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-5UTR	ENST00000378623	ENST00000310513		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-5UTR	ENST00000378623	ENST00000361904		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-intron	ENST00000378623	ENST00000539455		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-intron	ENST00000378623	ENST00000531165		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
5CDS-intron	ENST00000378623	ENST00000532048		TCGA	RV	OV	TCGA-13-A5FT-01A	LRP4	chr11	46905422	-	CELF1	chr11	47510576	-
In-frame	ENST00000373186	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000373186	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000373175	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000373175	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000308559	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000308559	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000373188	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000373188	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000373195	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000373195	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000340692	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000340692	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000425303	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000425303	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
Frame-shit	ENST00000432280	ENST00000308330		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000432280	ENST00000541171		TCGA	RV	OV	TCGA-29-A5NZ-01A	MOCS1	chr6	39893422	-	LEMD3	chr12	65632282	+
5CDS-intron	ENST00000327134	ENST00000357674		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000314062		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000346964		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000419354		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000452595		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000422288		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000448528		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000443183		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000450955		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000392382		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
5CDS-intron	ENST00000327134	ENST00000485409		TCGA	RV	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196888609	-
In-frame	ENST00000332707	ENST00000543942		TCGA	RV	OV	TCGA-09-2051-01A	XPOT	chr12	64803875	+	C12orf56	chr12	64746836	-
In-frame	ENST00000332707	ENST00000333722		TCGA	RV	OV	TCGA-09-2051-01A	XPOT	chr12	64803875	+	C12orf56	chr12	64746836	-
5CDS-intron	ENST00000332707	ENST00000536975		TCGA	RV	OV	TCGA-09-2051-01A	XPOT	chr12	64803875	+	C12orf56	chr12	64746836	-
5UTR-intron	ENST00000446856	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000446856	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000446856	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000446856	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000446856	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000264758	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000264758	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000398125	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000398125	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000513328	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000513328	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000503455	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000503455	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000355842	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000355842	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398123	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000398123	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000398129	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000398129	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000545951		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000382839		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000324666		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-intron	ENST00000538860	ENST00000502458		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000538860	ENST00000505311		TCGA	RV	OV	TCGA-29-1693-01A	ADD1	chr4	2845751	+	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000543523	ENST00000309364		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000359180		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000317589		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000355397		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000429027		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000539256		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000299275		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000538714		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000543806		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000424268		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000540972		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000543523	ENST00000510738		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000309364		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000359180		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000317589		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000355397		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000429027		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000539256		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000299275		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000538714		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000543806		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000424268		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000540972		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
5UTR-intron	ENST00000281172	ENST00000510738		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000309364		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000359180		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000317589		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000355397		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000429027		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000539256		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000299275		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000538714		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000543806		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000424268		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000540972		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000543612	ENST00000510738		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000309364		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000359180		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000317589		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000355397		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000429027		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000539256		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000299275		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000538714		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000543806		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000424268		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000540972		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000540613	ENST00000510738		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000309364		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000359180		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000317589		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000355397		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000429027		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000539256		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000299275		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000538714		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000543806		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000424268		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000540972		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
intron-intron	ENST00000542903	ENST00000510738		TCGA	RV	OV	TCGA-61-2102-01A	EPS8	chr12	15942095	-	PLEKHA5	chr12	19489449	+
In-frame	ENST00000538689	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000538689	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000538689	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000220584	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000220584	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000220584	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
intron-3CDS	ENST00000446331	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
intron-3CDS	ENST00000446331	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
intron-3CDS	ENST00000446331	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000443614	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000443614	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000443614	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000525900	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000525900	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000525900	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000528812	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000528812	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000528812	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000530664	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000530664	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000530664	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000528643	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000528643	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000528643	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000525777	ENST00000528712		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000525777	ENST00000335135		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
In-frame	ENST00000525777	ENST00000532059		TCGA	RV	OV	TCGA-09-2051-01A	FDFT1	chr8	11667359	+	GATA4	chr8	11612555	+
5UTR-3CDS	ENST00000360689	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000360689	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000360689	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-3CDS	ENST00000394586	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000394586	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000394586	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-3CDS	ENST00000557164	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000557164	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000557164	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-3CDS	ENST00000394585	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000394585	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000394585	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-3CDS	ENST00000358307	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000358307	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
5UTR-intron	ENST00000358307	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-3CDS	ENST00000417683	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000417683	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000417683	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-3CDS	ENST00000554765	ENST00000380243		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000554765	ENST00000557769		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000554765	ENST00000555822		TCGA	RV	OV	TCGA-13-0916-01A	FUT8	chr14	65922436	+	CCDC85C	chr14	100002425	-
intron-intron	ENST00000579662	ENST00000578382		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
intron-intron	ENST00000579662	ENST00000583560		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
5UTR-intron	ENST00000339591	ENST00000578382		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
5UTR-intron	ENST00000339591	ENST00000583560		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
5UTR-intron	ENST00000200181	ENST00000578382		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
5UTR-intron	ENST00000200181	ENST00000583560		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
5UTR-intron	ENST00000450894	ENST00000578382		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
5UTR-intron	ENST00000450894	ENST00000583560		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
intron-intron	ENST00000449880	ENST00000578382		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
intron-intron	ENST00000449880	ENST00000583560		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
intron-intron	ENST00000584558	ENST00000578382		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
intron-intron	ENST00000584558	ENST00000583560		TCGA	RV	OV	TCGA-61-1917-01A	ITGB4	chr17	73717692	+	MYO15B	chr17	73620450	+
Frame-shit	ENST00000264712	ENST00000302188		TCGA	RV	OV	TCGA-29-1699-01A	KIF3C	chr2	26203242	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000264712	ENST00000444339		TCGA	RV	OV	TCGA-29-1699-01A	KIF3C	chr2	26203242	-	RBKS	chr2	28004655	-
Frame-shit	ENST00000405914	ENST00000302188		TCGA	RV	OV	TCGA-29-1699-01A	KIF3C	chr2	26203242	-	RBKS	chr2	28004655	-
5CDS-intron	ENST00000405914	ENST00000444339		TCGA	RV	OV	TCGA-29-1699-01A	KIF3C	chr2	26203242	-	RBKS	chr2	28004655	-
intron-3CDS	ENST00000496378	ENST00000302188		TCGA	RV	OV	TCGA-29-1699-01A	KIF3C	chr2	26203242	-	RBKS	chr2	28004655	-
intron-intron	ENST00000496378	ENST00000444339		TCGA	RV	OV	TCGA-29-1699-01A	KIF3C	chr2	26203242	-	RBKS	chr2	28004655	-
5UTR-3CDS	ENST00000448637	ENST00000311907		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
5UTR-3CDS	ENST00000448637	ENST00000530231		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
intron-3CDS	ENST00000312675	ENST00000311907		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
intron-3CDS	ENST00000312675	ENST00000530231		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
5UTR-3CDS	ENST00000543006	ENST00000311907		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
5UTR-3CDS	ENST00000543006	ENST00000530231		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
intron-3CDS	ENST00000471917	ENST00000311907		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
intron-3CDS	ENST00000471917	ENST00000530231		TCGA	RV	OV	TCGA-13-0760-01A	LPP	chr3	188059507	+	F2	chr11	46741252	+
5CDS-5UTR	ENST00000372009	ENST00000399136		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000372009	ENST00000342108		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000372009	ENST00000399139		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000372009	ENST00000399137		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000372009	ENST00000399135		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-intron	ENST00000372009	ENST00000478313		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000361297	ENST00000399136		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000361297	ENST00000342108		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000361297	ENST00000399139		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000361297	ENST00000399137		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-5UTR	ENST00000361297	ENST00000399135		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
5CDS-intron	ENST00000361297	ENST00000478313		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000477968	ENST00000399136		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000477968	ENST00000342108		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000477968	ENST00000399139		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000477968	ENST00000399137		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-5UTR	ENST00000477968	ENST00000399135		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-intron	ENST00000477968	ENST00000478313		TCGA	RV	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37834074	-
intron-3CDS	ENST00000406477	ENST00000350028		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-intron	ENST00000406477	ENST00000493161		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-intron	ENST00000406477	ENST00000396202		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
Frame-shit	ENST00000338758	ENST00000350028		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
5CDS-intron	ENST00000338758	ENST00000493161		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
5CDS-intron	ENST00000338758	ENST00000396202		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-3CDS	ENST00000404989	ENST00000350028		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-intron	ENST00000404989	ENST00000493161		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-intron	ENST00000404989	ENST00000396202		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-3CDS	ENST00000477795	ENST00000350028		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-intron	ENST00000477795	ENST00000493161		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
intron-intron	ENST00000477795	ENST00000396202		TCGA	RV	OV	TCGA-13-0760-01A	PARVB	chr22	44420331	+	SAMM50	chr22	44392218	+
5UTR-5UTR	ENST00000367612	ENST00000475338		TCGA	RV	OV	TCGA-24-2288-01A	TOR1AIP2	chr1	179846374	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000367612	ENST00000367595		TCGA	RV	OV	TCGA-24-2288-01A	TOR1AIP2	chr1	179846374	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000609928	ENST00000475338		TCGA	RV	OV	TCGA-24-2288-01A	TOR1AIP2	chr1	179846374	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000609928	ENST00000367595		TCGA	RV	OV	TCGA-24-2288-01A	TOR1AIP2	chr1	179846374	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000482587	ENST00000475338		TCGA	RV	OV	TCGA-24-2288-01A	TOR1AIP2	chr1	179846374	-	ACBD6	chr1	180283857	-
5UTR-5UTR	ENST00000482587	ENST00000367595		TCGA	RV	OV	TCGA-24-2288-01A	TOR1AIP2	chr1	179846374	-	ACBD6	chr1	180283857	-
In-frame	ENST00000249270	ENST00000435765		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
In-frame	ENST00000249270	ENST00000292644		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
5CDS-intron	ENST00000249270	ENST00000544811		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
In-frame	ENST00000379263	ENST00000435765		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
In-frame	ENST00000379263	ENST00000292644		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
5CDS-intron	ENST00000379263	ENST00000544811		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
intron-3CDS	ENST00000412522	ENST00000435765		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
intron-3CDS	ENST00000412522	ENST00000292644		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
intron-intron	ENST00000412522	ENST00000544811		TCGA	RV	OV	TCGA-25-1326-01A	DNAJC2	chr7	102978183	-	PSMC2	chr7	102996141	+
Frame-shit	ENST00000370192	ENST00000303052		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000370192	ENST00000607537		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000370192	ENST00000303032		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
intron-3CDS	ENST00000474241	ENST00000303052		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
intron-3CDS	ENST00000474241	ENST00000607537		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
intron-3CDS	ENST00000474241	ENST00000303032		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000423006	ENST00000303052		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000423006	ENST00000607537		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000423006	ENST00000303032		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000306031	ENST00000303052		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000306031	ENST00000607537		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
Frame-shit	ENST00000306031	ENST00000303032		TCGA	RV	OV	TCGA-13-1510-01A	DPYD	chr1	98386440	-	CSNK1G1	chr15	64551440	-
5CDS-5UTR	ENST00000428826	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
5CDS-5UTR	ENST00000415827	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
5CDS-5UTR	ENST00000435174	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
5CDS-5UTR	ENST00000592743	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
5CDS-5UTR	ENST00000585893	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
5CDS-5UTR	ENST00000590078	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
intron-5UTR	ENST00000590783	ENST00000344686		TCGA	RV	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861864	-	MAP3K14	chr17	43368131	-
In-frame	ENST00000221419	ENST00000252699		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
5CDS-intron	ENST00000221419	ENST00000424234		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
5CDS-intron	ENST00000221419	ENST00000390009		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
5CDS-intron	ENST00000221419	ENST00000497637		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
intron-3CDS	ENST00000600873	ENST00000252699		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
intron-intron	ENST00000600873	ENST00000424234		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
intron-intron	ENST00000600873	ENST00000390009		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
intron-intron	ENST00000600873	ENST00000497637		TCGA	RV	OV	TCGA-23-1107-01A	HNRNPL	chr19	39340340	-	ACTN4	chr19	39205109	+
5CDS-5UTR	ENST00000419727	ENST00000329153		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000419727	ENST00000417684		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000419727	ENST00000559832		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
3UTR-5UTR	ENST00000559773	ENST00000329153		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
3UTR-intron	ENST00000559773	ENST00000417684		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
3UTR-intron	ENST00000559773	ENST00000559832		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-5UTR	ENST00000437176	ENST00000329153		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000437176	ENST00000417684		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000437176	ENST00000559832		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-5UTR	ENST00000435893	ENST00000329153		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000435893	ENST00000417684		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000435893	ENST00000559832		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-5UTR	ENST00000267569	ENST00000329153		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000267569	ENST00000417684		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
5CDS-intron	ENST00000267569	ENST00000559832		TCGA	RV	OV	TCGA-29-A5NZ-01A	JDP2	chr14	75904824	+	PLEKHH1	chr14	68008551	+
In-frame	ENST00000404771	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000404771	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000404771	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000372440	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000372440	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000372440	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000372443	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000372443	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000372443	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000286628	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000286628	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000286628	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000286627	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000286627	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000286627	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000354353	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000354353	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000354353	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000404857	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000404857	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000404857	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000406533	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000406533	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000406533	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
intron-3CDS	ENST00000484507	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
intron-3CDS	ENST00000484507	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
intron-intron	ENST00000484507	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000481070	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000481070	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000481070	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000480683	ENST00000372391		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000480683	ENST00000372388		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
5CDS-intron	ENST00000480683	ENST00000459739		TCGA	RV	OV	TCGA-24-1553-01A	KCNMA1	chr10	79397023	-	DLG5	chr10	79584234	-
In-frame	ENST00000216122	ENST00000519728		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
In-frame	ENST00000216122	ENST00000520220		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
5CDS-3UTR	ENST00000216122	ENST00000420292		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
intron-3CDS	ENST00000382011	ENST00000519728		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
intron-3CDS	ENST00000382011	ENST00000520220		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
intron-3UTR	ENST00000382011	ENST00000420292		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
intron-3CDS	ENST00000465557	ENST00000519728		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
intron-3CDS	ENST00000465557	ENST00000520220		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
intron-3UTR	ENST00000465557	ENST00000420292		TCGA	RV	OV	TCGA-25-1329-01A	MCM5	chr22	35799535	+	LYN	chr8	56910905	+
In-frame	ENST00000337132	ENST00000358432		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
5CDS-intron	ENST00000337132	ENST00000461614		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
In-frame	ENST00000504551	ENST00000358432		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
5CDS-intron	ENST00000504551	ENST00000461614		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
In-frame	ENST00000457722	ENST00000358432		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
5CDS-intron	ENST00000457722	ENST00000461614		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
In-frame	ENST00000406746	ENST00000358432		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
5CDS-intron	ENST00000406746	ENST00000461614		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
In-frame	ENST00000443980	ENST00000358432		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
5CDS-intron	ENST00000443980	ENST00000461614		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
intron-3CDS	ENST00000486390	ENST00000358432		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
intron-intron	ENST00000486390	ENST00000461614		TCGA	RV	OV	TCGA-25-2400-01A	NECAP2	chr1	16775696	+	EPHA2	chr1	16456914	-
Frame-shit	ENST00000256646	ENST00000271308		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
5CDS-intron	ENST00000256646	ENST00000538610		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
5CDS-5UTR	ENST00000256646	ENST00000490870		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
intron-3CDS	ENST00000602566	ENST00000271308		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
intron-intron	ENST00000602566	ENST00000538610		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
intron-5UTR	ENST00000602566	ENST00000490870		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
intron-3CDS	ENST00000493703	ENST00000271308		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
intron-intron	ENST00000493703	ENST00000538610		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
intron-5UTR	ENST00000493703	ENST00000490870		TCGA	RV	OV	TCGA-36-1574-01A	NOTCH2	chr1	120611948	-	PSMA5	chr1	109964548	-
In-frame	ENST00000316218	ENST00000261038		TCGA	RV	OV	TCGA-25-1322-01A	PDIA5	chr3	122821643	+	DIRC2	chr3	122575154	+
intron-3CDS	ENST00000467157	ENST00000261038		TCGA	RV	OV	TCGA-25-1322-01A	PDIA5	chr3	122821643	+	DIRC2	chr3	122575154	+
In-frame	ENST00000260197	ENST00000529397		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000260197	ENST00000422003		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
3UTR-3CDS	ENST00000532451	ENST00000529397		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
3UTR-3CDS	ENST00000532451	ENST00000422003		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000525532	ENST00000529397		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000525532	ENST00000422003		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000532694	ENST00000529397		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000532694	ENST00000422003		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000534286	ENST00000529397		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000534286	ENST00000422003		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000527934	ENST00000529397		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000527934	ENST00000422003		TCGA	RV	OV	TCGA-61-2094-01A	SORL1	chr11	121348952	+	TBCEL	chr11	120957487	+
In-frame	ENST00000359655	ENST00000373382		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
In-frame	ENST00000359655	ENST00000263559		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
In-frame	ENST00000359655	ENST00000395098		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
In-frame	ENST00000359655	ENST00000546041		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000359655	ENST00000490696		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000359655	ENST00000541711		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000359655	ENST00000489794		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000483572	ENST00000373382		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000483572	ENST00000263559		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000483572	ENST00000395098		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000483572	ENST00000546041		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000483572	ENST00000490696		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000483572	ENST00000541711		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000483572	ENST00000489794		TCGA	RV	OV	TCGA-36-1578-01A	SUPV3L1	chr10	70962799	+	VPS26A	chr10	70915568	+
5UTR-3CDS	ENST00000454300	ENST00000389757		TCGA	RV	OV	TCGA-04-1365-01A	TANC1	chr2	159825294	+	PKP4	chr2	159530189	+
5UTR-3CDS	ENST00000454300	ENST00000389759		TCGA	RV	OV	TCGA-04-1365-01A	TANC1	chr2	159825294	+	PKP4	chr2	159530189	+
5UTR-intron	ENST00000454300	ENST00000495123		TCGA	RV	OV	TCGA-04-1365-01A	TANC1	chr2	159825294	+	PKP4	chr2	159530189	+
5UTR-3CDS	ENST00000263635	ENST00000389757		TCGA	RV	OV	TCGA-04-1365-01A	TANC1	chr2	159825294	+	PKP4	chr2	159530189	+
5UTR-3CDS	ENST00000263635	ENST00000389759		TCGA	RV	OV	TCGA-04-1365-01A	TANC1	chr2	159825294	+	PKP4	chr2	159530189	+
5UTR-intron	ENST00000263635	ENST00000495123		TCGA	RV	OV	TCGA-04-1365-01A	TANC1	chr2	159825294	+	PKP4	chr2	159530189	+
In-frame	ENST00000253251	ENST00000294435		TCGA	RV	OV	TCGA-13-1510-01A	UBE4B	chr1	10132272	+	RBP7	chr1	10067628	+
5UTR-3CDS	ENST00000377157	ENST00000294435		TCGA	RV	OV	TCGA-13-1510-01A	UBE4B	chr1	10132272	+	RBP7	chr1	10067628	+
In-frame	ENST00000343090	ENST00000294435		TCGA	RV	OV	TCGA-13-1510-01A	UBE4B	chr1	10132272	+	RBP7	chr1	10067628	+
In-frame	ENST00000377153	ENST00000294435		TCGA	RV	OV	TCGA-13-1510-01A	UBE4B	chr1	10132272	+	RBP7	chr1	10067628	+
intron-3CDS	ENST00000475795	ENST00000294435		TCGA	RV	OV	TCGA-13-1510-01A	UBE4B	chr1	10132272	+	RBP7	chr1	10067628	+
5UTR-intron	ENST00000396029	ENST00000371571		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
5UTR-intron	ENST00000396029	ENST00000506387		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
5UTR-5UTR	ENST00000396029	ENST00000396017		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
5UTR-intron	ENST00000396032	ENST00000371571		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
5UTR-intron	ENST00000396032	ENST00000506387		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
5UTR-5UTR	ENST00000396032	ENST00000396017		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000371602	ENST00000371571		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000371602	ENST00000506387		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
intron-5UTR	ENST00000371602	ENST00000396017		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000349014	ENST00000371571		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
intron-intron	ENST00000349014	ENST00000506387		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
intron-5UTR	ENST00000349014	ENST00000396017		TCGA	RV	OV	TCGA-29-1783-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49628953	-
3UTR-3CDS	ENST00000426898	ENST00000340811		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
3UTR-3CDS	ENST00000426898	ENST00000070846		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
3UTR-intron	ENST00000426898	ENST00000546741		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000425752	ENST00000340811		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000425752	ENST00000070846		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
5CDS-intron	ENST00000425752	ENST00000546741		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000423947	ENST00000340811		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000423947	ENST00000070846		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
5CDS-intron	ENST00000423947	ENST00000546741		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000435642	ENST00000340811		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000435642	ENST00000070846		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
5CDS-intron	ENST00000435642	ENST00000546741		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000320560	ENST00000340811		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000320560	ENST00000070846		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
5CDS-intron	ENST00000320560	ENST00000546741		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000441606	ENST00000340811		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
Frame-shit	ENST00000441606	ENST00000070846		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
5CDS-intron	ENST00000441606	ENST00000546741		TCGA	RV	OV	TCGA-OY-A56P-01A	ANO6	chr12	45771896	+	PKP2	chr12	32955490	-
intron-3CDS	ENST00000263119	ENST00000344921		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000263119	ENST00000263121		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000263119	ENST00000407422		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000263119	ENST00000407082		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-intron	ENST00000263119	ENST00000477836		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000405822	ENST00000344921		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000405822	ENST00000263121		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000405822	ENST00000407422		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000405822	ENST00000407082		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-intron	ENST00000405822	ENST00000477836		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
5UTR-3CDS	ENST00000398319	ENST00000344921		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
5UTR-3CDS	ENST00000398319	ENST00000263121		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
5UTR-3CDS	ENST00000398319	ENST00000407422		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
5UTR-3CDS	ENST00000398319	ENST00000407082		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
5UTR-intron	ENST00000398319	ENST00000477836		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000337989	ENST00000344921		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000337989	ENST00000263121		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000337989	ENST00000407422		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000337989	ENST00000407082		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-intron	ENST00000337989	ENST00000477836		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000485008	ENST00000344921		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000485008	ENST00000263121		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000485008	ENST00000407422		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-3CDS	ENST00000485008	ENST00000407082		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
intron-intron	ENST00000485008	ENST00000477836		TCGA	RV	OV	TCGA-13-1405-01A	CABIN1	chr22	24408178	+	SMARCB1	chr22	24175759	+
In-frame	ENST00000327064	ENST00000592854		TCGA	RV	OV	TCGA-24-1548-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10973846	+
In-frame	ENST00000327064	ENST00000397820		TCGA	RV	OV	TCGA-24-1548-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10973846	+
In-frame	ENST00000344150	ENST00000592854		TCGA	RV	OV	TCGA-24-1548-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10973846	+
In-frame	ENST00000344150	ENST00000397820		TCGA	RV	OV	TCGA-24-1548-01A	CARM1	chr19	10982598	+	C19orf38	chr19	10973846	+
intron-3CDS	ENST00000593786	ENST00000216540		TCGA	RV	OV	TCGA-61-1738-01A	NCOA6	chr20	33413275	-	SLC10A1	chr14	70253024	-
intron-3CDS	ENST00000374796	ENST00000216540		TCGA	RV	OV	TCGA-61-1738-01A	NCOA6	chr20	33413275	-	SLC10A1	chr14	70253024	-
5UTR-3CDS	ENST00000359003	ENST00000216540		TCGA	RV	OV	TCGA-61-1738-01A	NCOA6	chr20	33413275	-	SLC10A1	chr14	70253024	-
Frame-shit	ENST00000405315	ENST00000263266		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
5CDS-intron	ENST00000405315	ENST00000595110		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
Frame-shit	ENST00000407032	ENST00000263266		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
5CDS-intron	ENST00000407032	ENST00000595110		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
intron-3CDS	ENST00000485798	ENST00000263266		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
intron-intron	ENST00000485798	ENST00000595110		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
Frame-shit	ENST00000263273	ENST00000263266		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
5CDS-intron	ENST00000263273	ENST00000595110		TCGA	RV	OV	TCGA-20-0987-01A	NUCB1	chr19	49416821	+	FAM83E	chr19	49104626	-
5UTR-3CDS	ENST00000319592	ENST00000295974		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000319592	ENST00000513140		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000319592	ENST00000508593		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000319592	ENST00000506352		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-intron	ENST00000319592	ENST00000511572		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000319592	ENST00000543538		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000319592	ENST00000502841		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000319592	ENST00000504305		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000295974		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000513140		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000508593		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381793	ENST00000506352		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000381793	ENST00000511572		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381793	ENST00000543538		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381793	ENST00000502841		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381793	ENST00000504305		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000295974		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000513140		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000508593		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000381795	ENST00000506352		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000381795	ENST00000511572		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381795	ENST00000543538		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381795	ENST00000502841		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000381795	ENST00000504305		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000295974		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000513140		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000508593		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-3CDS	ENST00000295971	ENST00000506352		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-intron	ENST00000295971	ENST00000511572		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000295971	ENST00000543538		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000295971	ENST00000502841		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
5UTR-5UTR	ENST00000295971	ENST00000504305		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000295974		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000513140		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000508593		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000514014	ENST00000506352		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000514014	ENST00000511572		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000514014	ENST00000543538		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000514014	ENST00000502841		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000514014	ENST00000504305		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000295974		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000513140		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000508593		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-3CDS	ENST00000515809	ENST00000506352		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-intron	ENST00000515809	ENST00000511572		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000515809	ENST00000543538		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000515809	ENST00000502841		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
intron-5UTR	ENST00000515809	ENST00000504305		TCGA	RV	OV	TCGA-24-2298-01A	RBM47	chr4	40631413	-	APBB2	chr4	40832594	-
In-frame	ENST00000394275	ENST00000268182		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
In-frame	ENST00000394275	ENST00000560738		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
5CDS-intron	ENST00000394275	ENST00000560020		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
In-frame	ENST00000418476	ENST00000268182		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
In-frame	ENST00000418476	ENST00000560738		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
5CDS-intron	ENST00000418476	ENST00000560020		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
3UTR-3CDS	ENST00000553671	ENST00000268182		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
3UTR-3CDS	ENST00000553671	ENST00000560738		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
3UTR-intron	ENST00000553671	ENST00000560020		TCGA	RV	OV	TCGA-24-2023-01A	UNC45A	chr15	91483703	+	IQGAP1	chr15	91029262	+
In-frame	ENST00000354619	ENST00000366582		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
In-frame	ENST00000354619	ENST00000366581		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
5CDS-intron	ENST00000354619	ENST00000483073		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
5CDS-intron	ENST00000354619	ENST00000366579		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
In-frame	ENST00000327333	ENST00000366582		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
In-frame	ENST00000327333	ENST00000366581		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
5CDS-intron	ENST00000327333	ENST00000483073		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
5CDS-intron	ENST00000327333	ENST00000366579		TCGA	RV	OV	TCGA-23-1023-01R	ERO1LB	chr1	236415350	-	HEATR1	chr1	236721829	-
5UTR-3CDS	ENST00000362074	ENST00000355621		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
5UTR-intron	ENST00000362074	ENST00000473814		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
5UTR-3CDS	ENST00000344859	ENST00000355621		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
5UTR-intron	ENST00000344859	ENST00000473814		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
intron-3CDS	ENST00000369340	ENST00000355621		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
intron-intron	ENST00000369340	ENST00000473814		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
intron-3CDS	ENST00000479995	ENST00000355621		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
intron-intron	ENST00000479995	ENST00000473814		TCGA	RV	OV	TCGA-25-1323-01A	NOTCH2NL	chr1	145209436	+	UBE2H	chr7	129498781	-
In-frame	ENST00000260197	ENST00000392793		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
In-frame	ENST00000260197	ENST00000264037		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
5CDS-intron	ENST00000260197	ENST00000478058		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
3UTR-3CDS	ENST00000532451	ENST00000392793		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
3UTR-3CDS	ENST00000532451	ENST00000264037		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
3UTR-intron	ENST00000532451	ENST00000478058		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000525532	ENST00000392793		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000525532	ENST00000264037		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-intron	ENST00000525532	ENST00000478058		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000532694	ENST00000392793		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000532694	ENST00000264037		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-intron	ENST00000532694	ENST00000478058		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000534286	ENST00000392793		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000534286	ENST00000264037		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-intron	ENST00000534286	ENST00000478058		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000527934	ENST00000392793		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-3CDS	ENST00000527934	ENST00000264037		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
intron-intron	ENST00000527934	ENST00000478058		TCGA	RV	OV	TCGA-13-1487-01A	SORL1	chr11	121360819	+	TECTA	chr11	121058541	+
Frame-shit	ENST00000225525	ENST00000395938		TCGA	RV	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567973	-	PMP22	chr17	15134397	-
Frame-shit	ENST00000225525	ENST00000312280		TCGA	RV	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567973	-	PMP22	chr17	15134397	-
Frame-shit	ENST00000225525	ENST00000494511		TCGA	RV	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567973	-	PMP22	chr17	15134397	-
5CDS-3UTR	ENST00000225525	ENST00000395936		TCGA	RV	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567973	-	PMP22	chr17	15134397	-
5CDS-intron	ENST00000225525	ENST00000426385		TCGA	RV	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567973	-	PMP22	chr17	15134397	-
In-frame	ENST00000324771	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000324771	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000324771	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000324771	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000324771	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000418800	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000418800	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000418800	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000418800	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000418800	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000454612	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000454612	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000454612	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000454612	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000454612	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376569	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376569	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376569	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376569	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000376569	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
3UTR-3CDS	ENST00000446312	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
3UTR-3CDS	ENST00000446312	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
3UTR-3CDS	ENST00000446312	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
3UTR-3CDS	ENST00000446312	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
3UTR-intron	ENST00000446312	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376575	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376575	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376575	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376575	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000376575	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376570	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376570	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376570	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376570	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000376570	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376568	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376568	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376568	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376568	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000376568	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000452441	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000452441	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000452441	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000452441	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000452441	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000508312	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000508312	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000508312	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000508312	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000508312	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376567	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376567	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376567	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000376567	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000376567	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000513240	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000513240	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000513240	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000513240	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000513240	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000508472	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000508472	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000508472	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000508472	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000508472	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000361741	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000361741	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000361741	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
In-frame	ENST00000361741	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5CDS-intron	ENST00000361741	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000434428	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000434428	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000434428	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000434428	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000434428	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000483193	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000483193	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000483193	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000483193	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000483193	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000383377	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000383377	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000383377	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000383377	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000383377	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400414	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400414	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400414	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400414	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400414	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000259875	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000259875	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000259875	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000259875	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000259875	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552721	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552721	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552721	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552721	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000552721	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000553015	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000553015	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000553015	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000553015	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000553015	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000468225	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000468225	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000468225	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000468225	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000468225	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400411	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400411	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400411	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400411	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400411	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400410	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400410	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400410	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400410	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400410	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000412329	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000412329	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000412329	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000412329	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000412329	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000449518	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000449518	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000449518	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000449518	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000449518	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000427053	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000427053	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000427053	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000427053	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000427053	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548962	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548962	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548962	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548962	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000548962	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548133	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548133	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548133	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548133	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000548133	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000462241	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000462241	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000462241	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000462241	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000462241	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000415092	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000415092	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000415092	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000415092	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000415092	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000453510	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000453510	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000453510	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000453510	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000453510	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550666	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550666	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550666	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550666	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000550666	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000488414	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000488414	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000488414	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000488414	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000488414	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000422628	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000422628	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000422628	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000422628	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000422628	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400492	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400492	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400492	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400492	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400492	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400491	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400491	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400491	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400491	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400491	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400489	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400489	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400489	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400489	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400489	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000549026	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000549026	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000549026	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000549026	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000549026	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550395	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550395	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550395	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550395	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000550395	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000490712	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000490712	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000490712	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000490712	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000490712	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400488	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400488	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400488	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400488	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400488	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400486	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400486	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400486	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000400486	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000400486	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552434	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552434	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552434	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552434	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000552434	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000430933	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000430933	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000430933	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000430933	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000430933	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000429699	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000429699	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000429699	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000429699	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000429699	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000421229	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000421229	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000421229	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000421229	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000421229	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550384	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550384	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550384	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000550384	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000550384	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552068	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552068	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552068	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000552068	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000552068	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000487780	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000487780	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000487780	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000487780	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000487780	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000454774	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000454774	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000454774	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000454774	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000454774	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000419412	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000419412	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000419412	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000419412	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000419412	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548693	ENST00000356341		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548693	ENST00000530617		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548693	ENST00000278568		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-3CDS	ENST00000548693	ENST00000528203		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
intron-intron	ENST00000548693	ENST00000525542		TCGA	RV	OV	TCGA-13-1477-01A	DDR1	chr6	30861200	+	PAK1	chr11	77070062	-
5UTR-3CDS	ENST00000373816	ENST00000373830		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
5UTR-intron	ENST00000373816	ENST00000495995		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
5UTR-3CDS	ENST00000361872	ENST00000373830		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
5UTR-intron	ENST00000361872	ENST00000495995		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
5UTR-3CDS	ENST00000294409	ENST00000373830		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
5UTR-intron	ENST00000294409	ENST00000495995		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
intron-3CDS	ENST00000480454	ENST00000373830		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
intron-intron	ENST00000480454	ENST00000495995		TCGA	RV	OV	TCGA-24-2023-01A	GMEB1	chr1	28995351	+	TRNAU1AP	chr1	28897688	+
In-frame	ENST00000397061	ENST00000590341		TCGA	RV	OV	TCGA-24-1552-01A	NUDT19	chr19	33183580	+	SLC7A9	chr19	33324229	-
In-frame	ENST00000397061	ENST00000023064		TCGA	RV	OV	TCGA-24-1552-01A	NUDT19	chr19	33183580	+	SLC7A9	chr19	33324229	-
In-frame	ENST00000397061	ENST00000587772		TCGA	RV	OV	TCGA-24-1552-01A	NUDT19	chr19	33183580	+	SLC7A9	chr19	33324229	-
5CDS-5UTR	ENST00000347159	ENST00000538442		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000347159	ENST00000399150		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000347159	ENST00000252229		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000427115		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000442104		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000451603		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000546706		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000438954		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000458032		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000551950		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000437651		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000383514		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000551608		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000436531		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000436655		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000547574		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000400313		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000428416		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000549014		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000428059		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000451789		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000443156		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000347159	ENST00000551960		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000376588	ENST00000538442		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000376588	ENST00000399150		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000376588	ENST00000252229		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000427115		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000442104		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000451603		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000546706		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000438954		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000458032		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000551950		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000437651		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000383514		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000551608		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000436531		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000436655		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000547574		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000400313		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000428416		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000549014		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000428059		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000451789		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000443156		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000376588	ENST00000551960		TCGA	RV	OV	TCGA-13-A5FT-01A	PSAT1	chr9	80932720	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000358377	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000358377	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-intron	ENST00000358377	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000353777	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000353777	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-intron	ENST00000353777	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
intron-5UTR	ENST00000394234	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
intron-5UTR	ENST00000394234	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
intron-intron	ENST00000394234	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000509153	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000509153	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-intron	ENST00000509153	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000555042	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-5UTR	ENST00000555042	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5CDS-intron	ENST00000555042	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
3UTR-5UTR	ENST00000510612	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
3UTR-5UTR	ENST00000510612	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
3UTR-intron	ENST00000510612	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5UTR-5UTR	ENST00000553457	ENST00000361339		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5UTR-5UTR	ENST00000553457	ENST00000426508		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
5UTR-intron	ENST00000553457	ENST00000439987		TCGA	RV	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404778	+	IFT140	chr16	1576797	-
Frame-shit	ENST00000428826	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
Frame-shit	ENST00000415827	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
5UTR-3CDS	ENST00000435174	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
Frame-shit	ENST00000592743	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
Frame-shit	ENST00000585893	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
intron-3CDS	ENST00000590078	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
intron-3CDS	ENST00000590783	ENST00000262577		TCGA	RV	OV	TCGA-36-1574-01A	EZH1	chr17	40880843	-	ZC3H3	chr8	144523290	-
In-frame	ENST00000589852	ENST00000344824		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
In-frame	ENST00000589852	ENST00000538887		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5CDS-intron	ENST00000589852	ENST00000300933		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5CDS-intron	ENST00000589852	ENST00000591645		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
In-frame	ENST00000263384	ENST00000344824		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
In-frame	ENST00000263384	ENST00000538887		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5CDS-intron	ENST00000263384	ENST00000300933		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5CDS-intron	ENST00000263384	ENST00000591645		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
In-frame	ENST00000588367	ENST00000344824		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
In-frame	ENST00000588367	ENST00000538887		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5CDS-intron	ENST00000588367	ENST00000300933		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5CDS-intron	ENST00000588367	ENST00000591645		TCGA	RV	OV	TCGA-30-1718-01A	FAM32A	chr19	16296576	+	TPM4	chr19	16186857	+
5UTR-3CDS	ENST00000368655	ENST00000368630		TCGA	RV	OV	TCGA-13-1405-01A	GATAD2B	chr1	153895209	-	CRTC2	chr1	153921860	-
5UTR-3CDS	ENST00000368655	ENST00000368633		TCGA	RV	OV	TCGA-13-1405-01A	GATAD2B	chr1	153895209	-	CRTC2	chr1	153921860	-
5UTR-intron	ENST00000368655	ENST00000476883		TCGA	RV	OV	TCGA-13-1405-01A	GATAD2B	chr1	153895209	-	CRTC2	chr1	153921860	-
In-frame	ENST00000371610	ENST00000371621		TCGA	RV	OV	TCGA-VG-A8LO-01A	PARD6B	chr20	49348389	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000371610	ENST00000541713		TCGA	RV	OV	TCGA-VG-A8LO-01A	PARD6B	chr20	49348389	+	PTPN1	chr20	49177900	+
In-frame	ENST00000396039	ENST00000371621		TCGA	RV	OV	TCGA-VG-A8LO-01A	PARD6B	chr20	49348389	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000396039	ENST00000541713		TCGA	RV	OV	TCGA-VG-A8LO-01A	PARD6B	chr20	49348389	+	PTPN1	chr20	49177900	+
In-frame	ENST00000330479	ENST00000280571		TCGA	RV	OV	TCGA-24-1470-01A	SETD8	chr12	123880979	+	RILPL2	chr12	123915206	-
In-frame	ENST00000402868	ENST00000280571		TCGA	RV	OV	TCGA-24-1470-01A	SETD8	chr12	123880979	+	RILPL2	chr12	123915206	-
intron-3CDS	ENST00000478781	ENST00000280571		TCGA	RV	OV	TCGA-24-1470-01A	SETD8	chr12	123880979	+	RILPL2	chr12	123915206	-
5UTR-3CDS	ENST00000274030	ENST00000307128		TCGA	RV	OV	TCGA-23-1120-01A	USP53	chr4	120138828	+	MYOZ2	chr4	120107121	+
intron-3CDS	ENST00000450251	ENST00000307128		TCGA	RV	OV	TCGA-23-1120-01A	USP53	chr4	120138828	+	MYOZ2	chr4	120107121	+
3UTR-3CDS	ENST00000510737	ENST00000307128		TCGA	RV	OV	TCGA-23-1120-01A	USP53	chr4	120138828	+	MYOZ2	chr4	120107121	+
In-frame	ENST00000326793	ENST00000343267		TCGA	RV	OV	TCGA-24-2262-01A	ACAP2	chr3	195101738	-	APOD	chr3	195300842	-
intron-3CDS	ENST00000472860	ENST00000343267		TCGA	RV	OV	TCGA-24-2262-01A	ACAP2	chr3	195101738	-	APOD	chr3	195300842	-
intron-5UTR	ENST00000372572	ENST00000372522		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372572	ENST00000372521		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372572	ENST00000537227		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372572	ENST00000497437		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372573	ENST00000372522		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372573	ENST00000372521		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372573	ENST00000537227		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372573	ENST00000497437		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361346	ENST00000372522		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361346	ENST00000372521		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361346	ENST00000537227		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361346	ENST00000497437		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361776	ENST00000372522		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361776	ENST00000372521		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361776	ENST00000537227		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000361776	ENST00000497437		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000545068	ENST00000372522		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000545068	ENST00000372521		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000545068	ENST00000537227		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000545068	ENST00000497437		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372571	ENST00000372522		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372571	ENST00000372521		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372571	ENST00000537227		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
intron-5UTR	ENST00000372571	ENST00000497437		TCGA	RV	OV	TCGA-13-0890-01A	FOXJ3	chr1	42800730	-	CCDC23	chr1	43282251	-
5UTR-5UTR	ENST00000216181	ENST00000417718		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
5UTR-5UTR	ENST00000216181	ENST00000216200		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
5UTR-intron	ENST00000216181	ENST00000404171		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
intron-5UTR	ENST00000475726	ENST00000417718		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
intron-5UTR	ENST00000475726	ENST00000216200		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
intron-intron	ENST00000475726	ENST00000404171		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
intron-5UTR	ENST00000401701	ENST00000417718		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
intron-5UTR	ENST00000401701	ENST00000216200		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
intron-intron	ENST00000401701	ENST00000404171		TCGA	RV	OV	TCGA-20-1684-01A	MYH9	chr22	36783852	-	PVALB	chr22	37213056	-
In-frame	ENST00000339362	ENST00000355327		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000339362	ENST00000261862		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000339362	ENST00000357769		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000339362	ENST00000567838		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000261908	ENST00000355327		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000261908	ENST00000261862		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000261908	ENST00000357769		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000261908	ENST00000567838		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000558964	ENST00000355327		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000558964	ENST00000261862		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000558964	ENST00000357769		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000558964	ENST00000567838		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000560262	ENST00000355327		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
In-frame	ENST00000560262	ENST00000261862		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000560262	ENST00000357769		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
5CDS-intron	ENST00000560262	ENST00000567838		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
intron-3CDS	ENST00000560352	ENST00000355327		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
intron-3CDS	ENST00000560352	ENST00000261862		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
intron-intron	ENST00000560352	ENST00000357769		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
intron-intron	ENST00000560352	ENST00000567838		TCGA	RV	OV	TCGA-24-1428-01A	NEO1	chr15	73470768	+	THSD4	chr15	71704026	+
Frame-shit	ENST00000372009	ENST00000271308		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
Frame-shit	ENST00000372009	ENST00000538610		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
5CDS-5UTR	ENST00000372009	ENST00000490870		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
Frame-shit	ENST00000361297	ENST00000271308		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
Frame-shit	ENST00000361297	ENST00000538610		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
5CDS-5UTR	ENST00000361297	ENST00000490870		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
intron-3CDS	ENST00000477968	ENST00000271308		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
intron-3CDS	ENST00000477968	ENST00000538610		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
intron-5UTR	ENST00000477968	ENST00000490870		TCGA	RV	OV	TCGA-23-1107-01A	MAST2	chr1	46348067	+	PSMA5	chr1	109944712	-
Frame-shit	ENST00000332830	ENST00000360295		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000332830	ENST00000317338		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000332830	ENST00000442608		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000332830	ENST00000335960		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000577226	ENST00000360295		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000577226	ENST00000317338		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000577226	ENST00000442608		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000577226	ENST00000335960		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000268756	ENST00000360295		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000268756	ENST00000317338		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000268756	ENST00000442608		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
Frame-shit	ENST00000268756	ENST00000335960		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000582655	ENST00000360295		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000582655	ENST00000317338		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000582655	ENST00000442608		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
intron-3CDS	ENST00000582655	ENST00000335960		TCGA	RV	OV	TCGA-24-2023-01A	PHF12	chr17	27277083	-	SEZ6	chr17	27309057	-
In-frame	ENST00000254325	ENST00000378407		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
In-frame	ENST00000254325	ENST00000378406		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
In-frame	ENST00000254325	ENST00000426546		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
In-frame	ENST00000254325	ENST00000327351		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
In-frame	ENST00000254325	ENST00000421582		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
In-frame	ENST00000254325	ENST00000378409		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000586913	ENST00000378407		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000586913	ENST00000378406		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000586913	ENST00000426546		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000586913	ENST00000327351		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000586913	ENST00000421582		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000586913	ENST00000378409		TCGA	RV	OV	TCGA-13-0801-01A	RFX1	chr19	14104337	-	CCDC107	chr9	35658573	+
In-frame	ENST00000259371	ENST00000229729		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000259371	ENST00000544672		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000259371	ENST00000375562		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000465707		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000417894		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000550821		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000550401		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000492911		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000453831		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000546461		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000551168		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000495620		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000425238		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000548188		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000549663		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000469478		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000415517		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000547288		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000547493		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000463111		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000383379		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000547684		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000549677		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000497745		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000366281		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000442152		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000553147		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000553121		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000259371	ENST00000495181		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000408936	ENST00000229729		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000408936	ENST00000544672		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000408936	ENST00000375562		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000465707		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000417894		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000550821		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000550401		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000492911		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000453831		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000546461		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000551168		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000495620		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000425238		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000548188		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000549663		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000469478		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000415517		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000547288		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000547493		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000463111		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000383379		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000547684		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000549677		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000497745		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000366281		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000442152		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000553147		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000553121		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000408936	ENST00000495181		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000309989	ENST00000229729		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000309989	ENST00000544672		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000309989	ENST00000375562		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000465707		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000417894		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000550821		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000550401		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000492911		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000453831		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000546461		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000551168		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000495620		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000425238		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000548188		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000549663		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000469478		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000415517		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000547288		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000547493		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000463111		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000383379		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000547684		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000549677		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000497745		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000366281		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000442152		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000553147		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000553121		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
5CDS-intron	ENST00000309989	ENST00000495181		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-3CDS	ENST00000487716	ENST00000229729		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-3CDS	ENST00000487716	ENST00000544672		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-3CDS	ENST00000487716	ENST00000375562		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000465707		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000417894		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000550821		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000550401		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000492911		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000453831		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000546461		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000551168		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000495620		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000425238		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000548188		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000549663		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000469478		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000415517		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000547288		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000547493		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000463111		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000383379		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000547684		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000549677		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000497745		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000366281		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000442152		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000553147		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000553121		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
intron-intron	ENST00000487716	ENST00000495181		TCGA	RV	OV	TCGA-61-1728-01A	DAB2IP	chr9	124533003	+	SLC44A4	chr6	31837414	-
In-frame	ENST00000320631	ENST00000421419		TCGA	RV	OV	TCGA-13-0801-01A	EHD1	chr11	64645533	-	ATG2A	chr11	64662681	-
Frame-shit	ENST00000320631	ENST00000377264		TCGA	RV	OV	TCGA-13-0801-01A	EHD1	chr11	64645533	-	ATG2A	chr11	64662681	-
Frame-shit	ENST00000359393	ENST00000421419		TCGA	RV	OV	TCGA-13-0801-01A	EHD1	chr11	64645533	-	ATG2A	chr11	64662681	-
Frame-shit	ENST00000359393	ENST00000377264		TCGA	RV	OV	TCGA-13-0801-01A	EHD1	chr11	64645533	-	ATG2A	chr11	64662681	-
intron-3CDS	ENST00000488711	ENST00000421419		TCGA	RV	OV	TCGA-13-0801-01A	EHD1	chr11	64645533	-	ATG2A	chr11	64662681	-
intron-3CDS	ENST00000488711	ENST00000377264		TCGA	RV	OV	TCGA-13-0801-01A	EHD1	chr11	64645533	-	ATG2A	chr11	64662681	-
In-frame	ENST00000264712	ENST00000260600		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
5CDS-intron	ENST00000264712	ENST00000405392		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
5CDS-intron	ENST00000264712	ENST00000450524		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
Frame-shit	ENST00000405914	ENST00000260600		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
5CDS-intron	ENST00000405914	ENST00000405392		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
5CDS-intron	ENST00000405914	ENST00000450524		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
intron-3CDS	ENST00000496378	ENST00000260600		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
intron-intron	ENST00000496378	ENST00000405392		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
intron-intron	ENST00000496378	ENST00000450524		TCGA	RV	OV	TCGA-59-A5PD-01A	KIF3C	chr2	26203242	-	ADCY3	chr2	25095588	-
In-frame	ENST00000545260	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000545260	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000545260	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000545260	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000545693	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000545693	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000545693	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000545693	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000350537	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000350537	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000350537	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000350537	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000346874	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000346874	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000346874	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000346874	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374789	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374789	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374789	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000374789	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374790	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374790	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374790	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000374790	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374794	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374794	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374794	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000374794	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374788	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374788	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374788	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000374788	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000466092	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000466092	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000466092	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-intron	ENST00000466092	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374776	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374776	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374776	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000374776	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000340077	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000340077	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000340077	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000340077	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000544292	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000544292	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000544292	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-intron	ENST00000544292	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374773	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374773	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
In-frame	ENST00000374773	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000374773	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000374768	ENST00000361524		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000374768	ENST00000584787		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000374768	ENST00000538137		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
intron-intron	ENST00000374768	ENST00000579111		TCGA	RV	OV	TCGA-24-1426-01A	PARD3	chr10	34805907	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000380737	ENST00000262096		TCGA	RV	OV	TCGA-25-1632-01A	PPP2R2A	chr8	26151256	+	ZDHHC2	chr8	17074681	+
Frame-shit	ENST00000315985	ENST00000262096		TCGA	RV	OV	TCGA-25-1632-01A	PPP2R2A	chr8	26151256	+	ZDHHC2	chr8	17074681	+
3UTR-3CDS	ENST00000523473	ENST00000262096		TCGA	RV	OV	TCGA-25-1632-01A	PPP2R2A	chr8	26151256	+	ZDHHC2	chr8	17074681	+
In-frame	ENST00000283033	ENST00000434724		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000283033	ENST00000439887		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000283033	ENST00000563468		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000283033	ENST00000420576		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
5CDS-intron	ENST00000283033	ENST00000564790		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000356957	ENST00000434724		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000356957	ENST00000439887		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000356957	ENST00000563468		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
In-frame	ENST00000356957	ENST00000420576		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
5CDS-intron	ENST00000356957	ENST00000564790		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
intron-3CDS	ENST00000570917	ENST00000434724		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
intron-3CDS	ENST00000570917	ENST00000439887		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
intron-3CDS	ENST00000570917	ENST00000563468		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
intron-3CDS	ENST00000570917	ENST00000420576		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
intron-intron	ENST00000570917	ENST00000564790		TCGA	RV	OV	TCGA-10-0934-01A	TXNDC11	chr16	11836333	-	GSPT1	chr16	11980788	-
Frame-shit	ENST00000367879	ENST00000420696		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000367879	ENST00000401534		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000367879	ENST00000559240		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000367879	ENST00000367897		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000367879	ENST00000540236		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-5UTR	ENST00000367879	ENST00000560641		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000367879	ENST00000474046		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000367879	ENST00000485769		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000367879	ENST00000540246		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000372212	ENST00000420696		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000372212	ENST00000401534		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000372212	ENST00000559240		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000372212	ENST00000367897		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000372212	ENST00000540236		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-5UTR	ENST00000372212	ENST00000560641		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000372212	ENST00000474046		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000372212	ENST00000485769		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000372212	ENST00000540246		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000462329	ENST00000420696		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000462329	ENST00000401534		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000462329	ENST00000559240		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000462329	ENST00000367897		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000462329	ENST00000540236		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-5UTR	ENST00000462329	ENST00000560641		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000462329	ENST00000474046		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000462329	ENST00000485769		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000462329	ENST00000540246		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000469256	ENST00000420696		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000469256	ENST00000401534		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000469256	ENST00000559240		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000469256	ENST00000367897		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000469256	ENST00000540236		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-5UTR	ENST00000469256	ENST00000560641		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000469256	ENST00000474046		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000469256	ENST00000485769		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000469256	ENST00000540246		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000470820	ENST00000420696		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000470820	ENST00000401534		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000470820	ENST00000559240		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000470820	ENST00000367897		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-3CDS	ENST00000470820	ENST00000540236		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-5UTR	ENST00000470820	ENST00000560641		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000470820	ENST00000474046		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000470820	ENST00000485769		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
intron-intron	ENST00000470820	ENST00000540246		TCGA	RV	OV	TCGA-25-1315-01A	UCK2	chr1	165797169	+	PBX1	chr1	164761731	+
5UTR-3CDS	ENST00000527985	ENST00000457912		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
5UTR-3CDS	ENST00000527985	ENST00000527972		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
5UTR-3CDS	ENST00000527985	ENST00000399154		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
5UTR-3CDS	ENST00000287169	ENST00000457912		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
5UTR-3CDS	ENST00000287169	ENST00000527972		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
5UTR-3CDS	ENST00000287169	ENST00000399154		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
intron-3CDS	ENST00000527090	ENST00000457912		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
intron-3CDS	ENST00000527090	ENST00000527972		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
intron-3CDS	ENST00000527090	ENST00000399154		TCGA	RV	OV	TCGA-24-1551-01A	ZDHHC5	chr11	57435659	+	SMTNL1	chr11	57313354	+
In-frame	ENST00000528796	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000528796	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000528796	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000528796	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
In-frame	ENST00000354599	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000354599	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000354599	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000354599	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
In-frame	ENST00000399602	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000399602	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000399602	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000399602	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
intron-3CDS	ENST00000343338	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
intron-intron	ENST00000343338	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
intron-intron	ENST00000343338	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
intron-intron	ENST00000343338	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-3CDS	ENST00000429541	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000429541	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000429541	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000429541	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
In-frame	ENST00000005082	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000005082	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000005082	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5CDS-intron	ENST00000005082	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-3CDS	ENST00000526601	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000526601	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000526601	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000526601	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-3CDS	ENST00000438262	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000438262	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000438262	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000438262	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-3CDS	ENST00000527386	ENST00000449352		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000527386	ENST00000529360		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000527386	ENST00000265978		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
5UTR-intron	ENST00000527386	ENST00000524416		TCGA	RV	OV	TCGA-24-1842-01A	ZNF195	chr11	3400268	-	FAM160A2	chr11	6240280	-
Frame-shit	ENST00000241052	ENST00000300692		TCGA	RV	OV	TCGA-13-0905-01B	CAT	chr11	34460626	+	CD3D	chr11	118210209	-
Frame-shit	ENST00000241052	ENST00000529594		TCGA	RV	OV	TCGA-13-0905-01B	CAT	chr11	34460626	+	CD3D	chr11	118210209	-
Frame-shit	ENST00000241052	ENST00000392884		TCGA	RV	OV	TCGA-13-0905-01B	CAT	chr11	34460626	+	CD3D	chr11	118210209	-
intron-3CDS	ENST00000534710	ENST00000300692		TCGA	RV	OV	TCGA-13-0905-01B	CAT	chr11	34460626	+	CD3D	chr11	118210209	-
intron-3CDS	ENST00000534710	ENST00000529594		TCGA	RV	OV	TCGA-13-0905-01B	CAT	chr11	34460626	+	CD3D	chr11	118210209	-
intron-3CDS	ENST00000534710	ENST00000392884		TCGA	RV	OV	TCGA-13-0905-01B	CAT	chr11	34460626	+	CD3D	chr11	118210209	-
5CDS-intron	ENST00000369911	ENST00000369927		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000369911	ENST00000346249		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000369911	ENST00000348257		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000369911	ENST00000352482		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000369911	ENST00000358548		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000369911	ENST00000351424		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000369911	ENST00000217121		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000369927		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000346249		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000348257		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000352482		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000358548		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000351424		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5CDS-intron	ENST00000360864	ENST00000217121		TCGA	RV	OV	TCGA-24-1428-01A	DNAJC5	chr20	62562375	+	TPD52L2	chr20	62500649	+
5UTR-3CDS	ENST00000368655	ENST00000368559		TCGA	RV	OV	TCGA-30-1718-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153965565	-
5UTR-3CDS	ENST00000368655	ENST00000368553		TCGA	RV	OV	TCGA-30-1718-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153965565	-
5UTR-3CDS	ENST00000368655	ENST00000271854		TCGA	RV	OV	TCGA-30-1718-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	153965565	-
Frame-shit	ENST00000335255	ENST00000390006		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
Frame-shit	ENST00000335255	ENST00000309794		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
Frame-shit	ENST00000335255	ENST00000345415		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
Frame-shit	ENST00000335255	ENST00000457415		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
Frame-shit	ENST00000335255	ENST00000412079		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
5CDS-3UTR	ENST00000335255	ENST00000581743		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
intron-3CDS	ENST00000529652	ENST00000390006		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
intron-3CDS	ENST00000529652	ENST00000309794		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
intron-3CDS	ENST00000529652	ENST00000345415		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
intron-3CDS	ENST00000529652	ENST00000457415		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
intron-3CDS	ENST00000529652	ENST00000412079		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
intron-3UTR	ENST00000529652	ENST00000581743		TCGA	RV	OV	TCGA-24-1428-01A	FOXK2	chr17	80478183	+	NARF	chr17	80436676	+
5UTR-3CDS	ENST00000452135	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000452135	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000452135	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000452135	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000452135	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000393360	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000393360	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000393360	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000393360	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000393360	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000455781	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000455781	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000455781	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000455781	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000455781	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000343111	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000343111	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000343111	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000343111	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000343111	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000347470	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000347470	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000347470	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000347470	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000347470	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000397072	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000397072	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000397072	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000397072	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000397072	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000425491	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000425491	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000425491	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000425491	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000425491	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000539014	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000539014	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000539014	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000539014	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000539014	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000524170	ENST00000567435		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000524170	ENST00000565335		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000524170	ENST00000395081		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000524170	ENST00000361351		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
intron-3CDS	ENST00000524170	ENST00000564488		TCGA	RV	OV	TCGA-25-1314-01A	MAPK9	chr5	179718848	-	UBL7	chr15	74749012	-
5UTR-3CDS	ENST00000490103	ENST00000216121		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
5UTR-intron	ENST00000490103	ENST00000494966		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
intron-3CDS	ENST00000397871	ENST00000216121		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
intron-intron	ENST00000397871	ENST00000494966		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
intron-3CDS	ENST00000397872	ENST00000216121		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
intron-intron	ENST00000397872	ENST00000494966		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
5UTR-3CDS	ENST00000397873	ENST00000216121		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
5UTR-intron	ENST00000397873	ENST00000494966		TCGA	RV	OV	TCGA-24-1470-01A	THOC5	chr22	29949660	-	NIPSNAP1	chr22	29957851	-
intron-5UTR	ENST00000292852	ENST00000222345		TCGA	RV	OV	TCGA-5X-AA5U-01A	FBXO17	chr19	39416845	-	SIPA1L3	chr19	38519729	+
intron-3UTR	ENST00000292852	ENST00000476317		TCGA	RV	OV	TCGA-5X-AA5U-01A	FBXO17	chr19	39416845	-	SIPA1L3	chr19	38519729	+
intron-5UTR	ENST00000595329	ENST00000222345		TCGA	RV	OV	TCGA-5X-AA5U-01A	FBXO17	chr19	39416845	-	SIPA1L3	chr19	38519729	+
intron-3UTR	ENST00000595329	ENST00000476317		TCGA	RV	OV	TCGA-5X-AA5U-01A	FBXO17	chr19	39416845	-	SIPA1L3	chr19	38519729	+
Frame-shit	ENST00000216181	ENST00000300105		TCGA	RV	OV	TCGA-24-2026-01A	MYH9	chr22	36705327	-	CACNG2	chr22	36983595	-
5CDS-intron	ENST00000216181	ENST00000480002		TCGA	RV	OV	TCGA-24-2026-01A	MYH9	chr22	36705327	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000475726	ENST00000300105		TCGA	RV	OV	TCGA-24-2026-01A	MYH9	chr22	36705327	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000475726	ENST00000480002		TCGA	RV	OV	TCGA-24-2026-01A	MYH9	chr22	36705327	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000401701	ENST00000300105		TCGA	RV	OV	TCGA-24-2026-01A	MYH9	chr22	36705327	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000401701	ENST00000480002		TCGA	RV	OV	TCGA-24-2026-01A	MYH9	chr22	36705327	-	CACNG2	chr22	36983595	-
Frame-shit	ENST00000395863	ENST00000356208		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000395863	ENST00000440234		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000395863	ENST00000371219		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000395864	ENST00000356208		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000395864	ENST00000440234		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000395864	ENST00000371219		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000450594	ENST00000356208		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000450594	ENST00000440234		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000450594	ENST00000371219		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
5UTR-3CDS	ENST00000460817	ENST00000356208		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
5UTR-3CDS	ENST00000460817	ENST00000440234		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
5UTR-3CDS	ENST00000460817	ENST00000371219		TCGA	RV	OV	TCGA-24-2288-01A	BMP7	chr20	55749987	-	RBM38	chr20	55982599	+
Frame-shit	ENST00000263102	ENST00000280772		TCGA	RV	OV	TCGA-13-0760-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61827767	-
Frame-shit	ENST00000263102	ENST00000373827		TCGA	RV	OV	TCGA-13-0760-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61827767	-
Frame-shit	ENST00000263102	ENST00000355288		TCGA	RV	OV	TCGA-13-0760-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61827767	-
Frame-shit	ENST00000263102	ENST00000503366		TCGA	RV	OV	TCGA-13-0760-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61827767	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	OV	TCGA-13-0760-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61827767	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	OV	TCGA-13-0760-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61827767	-
In-frame	ENST00000292147	ENST00000216211		TCGA	RV	OV	TCGA-13-1405-01A	ETHE1	chr19	44030667	-	UPK3A	chr22	45691441	+
Frame-shit	ENST00000292147	ENST00000396082		TCGA	RV	OV	TCGA-13-1405-01A	ETHE1	chr19	44030667	-	UPK3A	chr22	45691441	+
In-frame	ENST00000600651	ENST00000216211		TCGA	RV	OV	TCGA-13-1405-01A	ETHE1	chr19	44030667	-	UPK3A	chr22	45691441	+
Frame-shit	ENST00000600651	ENST00000396082		TCGA	RV	OV	TCGA-13-1405-01A	ETHE1	chr19	44030667	-	UPK3A	chr22	45691441	+
In-frame	ENST00000394126	ENST00000377755		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
In-frame	ENST00000394126	ENST00000398486		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000356271	ENST00000377755		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000356271	ENST00000398486		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000394128	ENST00000377755		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000394128	ENST00000398486		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000394127	ENST00000377755		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000394127	ENST00000398486		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
In-frame	ENST00000501516	ENST00000377755		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
In-frame	ENST00000501516	ENST00000398486		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
5UTR-3CDS	ENST00000479829	ENST00000377755		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
5UTR-3CDS	ENST00000479829	ENST00000398486		TCGA	RV	OV	TCGA-29-2428-01A	MED24	chr17	38209551	-	KRT40	chr17	39135276	-
Frame-shit	ENST00000311275	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000311275	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000311275	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000311275	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000360911	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000360911	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000360911	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000360911	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000458360	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000458360	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000458360	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000458360	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000262975	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000262975	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000262975	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000262975	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000471951	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000471951	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000471951	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000471951	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000352431	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000352431	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000352431	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000352431	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000396281	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000396281	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000396281	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000396281	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000446994	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000446994	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000446994	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000446994	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000536340	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000536340	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000536340	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000536340	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000355972	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
Frame-shit	ENST00000355972	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000355972	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000355972	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000540497	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000540497	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000540497	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000540497	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000461685	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000461685	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000461685	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000461685	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000372023	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000372023	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000372023	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5CDS-intron	ENST00000372023	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5UTR-3CDS	ENST00000468376	ENST00000357410		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5UTR-3CDS	ENST00000468376	ENST00000327619		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5UTR-intron	ENST00000468376	ENST00000497428		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
5UTR-intron	ENST00000468376	ENST00000317304		TCGA	RV	OV	TCGA-04-1365-01A	ZMYND8	chr20	45874752	-	EYA2	chr20	45717878	+
In-frame	ENST00000263102	ENST00000280772		TCGA	RV	OV	TCGA-61-1914-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802517	-
Frame-shit	ENST00000263102	ENST00000373827		TCGA	RV	OV	TCGA-61-1914-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802517	-
Frame-shit	ENST00000263102	ENST00000355288		TCGA	RV	OV	TCGA-61-1914-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802517	-
In-frame	ENST00000263102	ENST00000503366		TCGA	RV	OV	TCGA-61-1914-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802517	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	OV	TCGA-61-1914-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802517	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	OV	TCGA-61-1914-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802517	-
In-frame	ENST00000336915	ENST00000311177		TCGA	RV	OV	TCGA-VG-A8LO-01A	SKAP1	chr17	46423267	-	HOXB9	chr17	46700497	-
Frame-shit	ENST00000336915	ENST00000550387		TCGA	RV	OV	TCGA-VG-A8LO-01A	SKAP1	chr17	46423267	-	HOXB9	chr17	46700497	-
In-frame	ENST00000584924	ENST00000311177		TCGA	RV	OV	TCGA-VG-A8LO-01A	SKAP1	chr17	46423267	-	HOXB9	chr17	46700497	-
Frame-shit	ENST00000584924	ENST00000550387		TCGA	RV	OV	TCGA-VG-A8LO-01A	SKAP1	chr17	46423267	-	HOXB9	chr17	46700497	-
5UTR-3CDS	ENST00000535550	ENST00000354232		TCGA	RV	OV	TCGA-24-1551-01A	ZNF805	chr19	57752289	+	ETFB	chr19	51857562	-
5UTR-3CDS	ENST00000535550	ENST00000309244		TCGA	RV	OV	TCGA-24-1551-01A	ZNF805	chr19	57752289	+	ETFB	chr19	51857562	-
5UTR-3CDS	ENST00000354309	ENST00000354232		TCGA	RV	OV	TCGA-24-1551-01A	ZNF805	chr19	57752289	+	ETFB	chr19	51857562	-
5UTR-3CDS	ENST00000354309	ENST00000309244		TCGA	RV	OV	TCGA-24-1551-01A	ZNF805	chr19	57752289	+	ETFB	chr19	51857562	-
In-frame	ENST00000414468	ENST00000354232		TCGA	RV	OV	TCGA-24-1551-01A	ZNF805	chr19	57752289	+	ETFB	chr19	51857562	-
In-frame	ENST00000414468	ENST00000309244		TCGA	RV	OV	TCGA-24-1551-01A	ZNF805	chr19	57752289	+	ETFB	chr19	51857562	-
In-frame	ENST00000222345	ENST00000543086		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
In-frame	ENST00000222345	ENST00000546231		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
In-frame	ENST00000222345	ENST00000397203		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
In-frame	ENST00000222345	ENST00000360905		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
In-frame	ENST00000222345	ENST00000589028		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
In-frame	ENST00000222345	ENST00000355446		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
5CDS-intron	ENST00000222345	ENST00000536573		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-3CDS	ENST00000476317	ENST00000543086		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-3CDS	ENST00000476317	ENST00000546231		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-3CDS	ENST00000476317	ENST00000397203		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-3CDS	ENST00000476317	ENST00000360905		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-3CDS	ENST00000476317	ENST00000589028		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-3CDS	ENST00000476317	ENST00000355446		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
intron-intron	ENST00000476317	ENST00000536573		TCGA	RV	OV	TCGA-5X-AA5U-01A	SIPA1L3	chr19	38579491	+	ERC1	chr12	1192330	+
5UTR-intron	ENST00000413658	ENST00000343023		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000413658	ENST00000354230		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000413658	ENST00000303887		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000424697	ENST00000343023		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000424697	ENST00000354230		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000424697	ENST00000303887		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
intron-intron	ENST00000303915	ENST00000343023		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
intron-intron	ENST00000303915	ENST00000354230		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
intron-intron	ENST00000303915	ENST00000303887		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000299667	ENST00000343023		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000299667	ENST00000354230		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
5UTR-intron	ENST00000299667	ENST00000303887		TCGA	RV	OV	TCGA-24-2281-01A	ZNF3	chr7	99679258	-	MCM7	chr7	99690756	-
Frame-shit	ENST00000369061	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369061	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000369061	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000357555	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000357555	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000357555	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000358487	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000358487	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000358487	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000356226	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000356226	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000356226	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369060	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369060	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000369060	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369059	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369059	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000369059	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000346997	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000346997	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000346997	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000457416	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000457416	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000457416	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000351936	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000351936	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000351936	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000360144	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000360144	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000360144	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369056	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000369056	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000369056	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5UTR-3CDS	ENST00000490349	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5UTR-3CDS	ENST00000490349	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5UTR-intron	ENST00000490349	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000359354	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
Frame-shit	ENST00000359354	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000359354	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
intron-3CDS	ENST00000478859	ENST00000219473		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
intron-3CDS	ENST00000478859	ENST00000570191		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
intron-intron	ENST00000478859	ENST00000562743		TCGA	RV	OV	TCGA-24-1424-01A	FGFR2	chr10	123353223	-	USP10	chr16	84792322	+
In-frame	ENST00000538303	ENST00000344773		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000538303	ENST00000379624		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000538303	ENST00000342045		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000538303	ENST00000379632		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000538303	ENST00000361704		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000538303	ENST00000603461		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000379343	ENST00000344773		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000379343	ENST00000379624		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000379343	ENST00000342045		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000379343	ENST00000379632		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000379343	ENST00000361704		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000379343	ENST00000603461		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000357055	ENST00000344773		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000357055	ENST00000379624		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000357055	ENST00000342045		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000357055	ENST00000379632		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000357055	ENST00000361704		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-intron	ENST00000357055	ENST00000603461		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000435660	ENST00000344773		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000435660	ENST00000379624		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000435660	ENST00000342045		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000435660	ENST00000379632		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000435660	ENST00000361704		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000435660	ENST00000603461		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000282587	ENST00000344773		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000282587	ENST00000379624		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000282587	ENST00000342045		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000282587	ENST00000379632		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
In-frame	ENST00000282587	ENST00000361704		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
5CDS-intron	ENST00000282587	ENST00000603461		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000406369	ENST00000344773		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000406369	ENST00000379624		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000406369	ENST00000342045		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000406369	ENST00000379632		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-3CDS	ENST00000406369	ENST00000361704		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
intron-intron	ENST00000406369	ENST00000603461		TCGA	RV	OV	TCGA-57-1583-01A	SLC30A6	chr2	32400430	+	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000590602	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000590602	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000590602	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000590602	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000590602	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000322933	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000322933	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000322933	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000322933	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000322933	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000592076	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000592076	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000592076	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000592076	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000592076	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000392467	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000392467	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000392467	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000392467	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000392467	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000322914	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000322914	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000322914	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000322914	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000322914	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000306591	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000306591	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000306591	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000306591	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000306591	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000591436	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000591436	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000591436	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000591436	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
intron-3CDS	ENST00000591436	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000589553	ENST00000301634		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000589553	ENST00000405273		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000589553	ENST00000588734		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000589553	ENST00000590862		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000589553	ENST00000590430		TCGA	RV	OV	TCGA-61-1917-01A	TMC6	chr17	76124693	-	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000369299	ENST00000367195		TCGA	RV	OV	TCGA-24-2024-01A	PIAS3	chr1	145575404	+	REN	chr1	204131291	-
5UTR-3CDS	ENST00000369299	ENST00000272190		TCGA	RV	OV	TCGA-24-2024-01A	PIAS3	chr1	145575404	+	REN	chr1	204131291	-
intron-3CDS	ENST00000393045	ENST00000367195		TCGA	RV	OV	TCGA-24-2024-01A	PIAS3	chr1	145575404	+	REN	chr1	204131291	-
intron-3CDS	ENST00000393045	ENST00000272190		TCGA	RV	OV	TCGA-24-2024-01A	PIAS3	chr1	145575404	+	REN	chr1	204131291	-
intron-3CDS	ENST00000369298	ENST00000367195		TCGA	RV	OV	TCGA-24-2024-01A	PIAS3	chr1	145575404	+	REN	chr1	204131291	-
intron-3CDS	ENST00000369298	ENST00000272190		TCGA	RV	OV	TCGA-24-2024-01A	PIAS3	chr1	145575404	+	REN	chr1	204131291	-
intron-3CDS	ENST00000430069	ENST00000382172		TCGA	RV	OV	TCGA-31-1959-01A	TBL1XR1	chr3	176914909	-	MIPEP	chr13	24330757	-
intron-intron	ENST00000430069	ENST00000469167		TCGA	RV	OV	TCGA-31-1959-01A	TBL1XR1	chr3	176914909	-	MIPEP	chr13	24330757	-
5UTR-3CDS	ENST00000457928	ENST00000382172		TCGA	RV	OV	TCGA-31-1959-01A	TBL1XR1	chr3	176914909	-	MIPEP	chr13	24330757	-
5UTR-intron	ENST00000457928	ENST00000469167		TCGA	RV	OV	TCGA-31-1959-01A	TBL1XR1	chr3	176914909	-	MIPEP	chr13	24330757	-
intron-3CDS	ENST00000359008	ENST00000393203		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
intron-intron	ENST00000359008	ENST00000496699		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
Frame-shit	ENST00000328189	ENST00000393203		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
5CDS-intron	ENST00000328189	ENST00000496699		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
Frame-shit	ENST00000369458	ENST00000393203		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
5CDS-intron	ENST00000369458	ENST00000496699		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
intron-3CDS	ENST00000539893	ENST00000393203		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
intron-intron	ENST00000539893	ENST00000496699		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
5UTR-3CDS	ENST00000463461	ENST00000393203		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
5UTR-intron	ENST00000463461	ENST00000496699		TCGA	RV	OV	TCGA-29-1785-01A	VTCN1	chr1	117753446	-	PTGFRN	chr1	117484337	+
In-frame	ENST00000357674	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000314062	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000346964	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000419354	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
intron-3CDS	ENST00000452595	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000422288	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000448528	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
intron-3CDS	ENST00000443183	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000450955	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
In-frame	ENST00000392382	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
5UTR-3CDS	ENST00000485409	ENST00000327134		TCGA	RV	OV	TCGA-25-1328-01A	DLG1	chr3	197009550	-	PAK2	chr3	196534653	+
Frame-shit	ENST00000389757	ENST00000435564		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
Frame-shit	ENST00000389757	ENST00000536095		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
In-frame	ENST00000389757	ENST00000409365		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
Frame-shit	ENST00000389757	ENST00000331935		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389757	ENST00000351439		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389757	ENST00000410103		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389757	ENST00000358139		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389757	ENST00000456212		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389757	ENST00000346717		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389757	ENST00000482538		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
Frame-shit	ENST00000389759	ENST00000435564		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
Frame-shit	ENST00000389759	ENST00000536095		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
In-frame	ENST00000389759	ENST00000409365		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
Frame-shit	ENST00000389759	ENST00000331935		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389759	ENST00000351439		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389759	ENST00000410103		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389759	ENST00000358139		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389759	ENST00000456212		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389759	ENST00000346717		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
5CDS-intron	ENST00000389759	ENST00000482538		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-3CDS	ENST00000495123	ENST00000435564		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-3CDS	ENST00000495123	ENST00000536095		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-3CDS	ENST00000495123	ENST00000409365		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-3CDS	ENST00000495123	ENST00000331935		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-intron	ENST00000495123	ENST00000351439		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-intron	ENST00000495123	ENST00000410103		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-intron	ENST00000495123	ENST00000358139		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-intron	ENST00000495123	ENST00000456212		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-intron	ENST00000495123	ENST00000346717		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
intron-intron	ENST00000495123	ENST00000482538		TCGA	RV	OV	TCGA-23-2081-01A	PKP4	chr2	159459616	+	PDE1A	chr2	183011879	-
Frame-shit	ENST00000531072	ENST00000377244		TCGA	RV	OV	TCGA-13-1511-01A	SAC3D1	chr11	64809338	+	SNX15	chr11	64807158	+
Frame-shit	ENST00000531072	ENST00000352068		TCGA	RV	OV	TCGA-13-1511-01A	SAC3D1	chr11	64809338	+	SNX15	chr11	64807158	+
Frame-shit	ENST00000398846	ENST00000377244		TCGA	RV	OV	TCGA-13-1511-01A	SAC3D1	chr11	64809338	+	SNX15	chr11	64807158	+
Frame-shit	ENST00000398846	ENST00000352068		TCGA	RV	OV	TCGA-13-1511-01A	SAC3D1	chr11	64809338	+	SNX15	chr11	64807158	+
3UTR-3CDS	ENST00000530213	ENST00000377244		TCGA	RV	OV	TCGA-13-1511-01A	SAC3D1	chr11	64809338	+	SNX15	chr11	64807158	+
3UTR-3CDS	ENST00000530213	ENST00000352068		TCGA	RV	OV	TCGA-13-1511-01A	SAC3D1	chr11	64809338	+	SNX15	chr11	64807158	+
5CDS-5UTR	ENST00000297578	ENST00000541742		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000297578	ENST00000490107		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000297578	ENST00000388985		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000297578	ENST00000366517		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000297578	ENST00000403792		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000543107	ENST00000541742		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000543107	ENST00000490107		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000543107	ENST00000388985		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000543107	ENST00000366517		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000543107	ENST00000403792		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-5UTR	ENST00000523701	ENST00000541742		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-5UTR	ENST00000523701	ENST00000490107		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-5UTR	ENST00000523701	ENST00000388985		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-intron	ENST00000523701	ENST00000366517		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-intron	ENST00000523701	ENST00000403792		TCGA	RV	OV	TCGA-29-1770-02A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
Frame-shit	ENST00000311275	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000311275	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000311275	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000311275	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000311275	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000360911	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000360911	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000360911	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000360911	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000360911	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000458360	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000458360	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000458360	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000458360	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000458360	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000262975	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000262975	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000262975	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000262975	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000262975	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000471951	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000471951	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000471951	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000471951	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000471951	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000352431	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000352431	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000352431	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000352431	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000352431	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000396281	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000396281	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000396281	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000396281	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000396281	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000446994	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000446994	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000446994	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000446994	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000446994	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000536340	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000536340	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000536340	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000536340	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000536340	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000355972	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000355972	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000355972	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
In-frame	ENST00000355972	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000355972	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000540497	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000540497	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000540497	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000540497	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000540497	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000461685	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000461685	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000461685	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000461685	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000461685	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000372023	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000372023	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000372023	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
Frame-shit	ENST00000372023	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
5CDS-intron	ENST00000372023	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
intron-3CDS	ENST00000468376	ENST00000359930		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
intron-3CDS	ENST00000468376	ENST00000484875		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
intron-3CDS	ENST00000468376	ENST00000361612		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
intron-3CDS	ENST00000468376	ENST00000467815		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
intron-intron	ENST00000468376	ENST00000478766		TCGA	RV	OV	TCGA-09-1673-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46319039	-
intron-3CDS	ENST00000298834	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000426438	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000314845	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000533727	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000534300	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000458649	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000528950	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000529963	ENST00000326737		TCGA	RV	OV	TCGA-13-0919-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5CDS-5UTR	ENST00000292123	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000292123	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000292123	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-intron	ENST00000292123	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000592224	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000592224	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000592224	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-intron	ENST00000592224	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
3UTR-5UTR	ENST00000586934	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
3UTR-5UTR	ENST00000586934	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
3UTR-5UTR	ENST00000586934	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
3UTR-intron	ENST00000586934	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000454510	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000454510	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000454510	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-intron	ENST00000454510	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5UTR-5UTR	ENST00000433404	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5UTR-5UTR	ENST00000433404	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5UTR-5UTR	ENST00000433404	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5UTR-intron	ENST00000433404	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000588852	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000588852	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000588852	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-intron	ENST00000588852	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000538656	ENST00000303657		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000538656	ENST00000359161		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-5UTR	ENST00000538656	ENST00000592546		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-intron	ENST00000538656	ENST00000587700		TCGA	RV	OV	TCGA-OY-A56P-01A	SAFB	chr19	5626500	+	RFX2	chr19	6047515	-
5CDS-3UTR	ENST00000600335	ENST00000585548		TCGA	RV	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000600335	ENST00000317060		TCGA	RV	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000334213	ENST00000585548		TCGA	RV	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000334213	ENST00000317060		TCGA	RV	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000485451	ENST00000585548		TCGA	RV	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000485451	ENST00000317060		TCGA	RV	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000597960	ENST00000585548		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000597960	ENST00000317060		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000610101	ENST00000585548		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000610101	ENST00000317060		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000596558	ENST00000585548		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000596558	ENST00000317060		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000222308	ENST00000585548		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000222308	ENST00000317060		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000608443	ENST00000585548		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3UTR	ENST00000608443	ENST00000317060		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000453489	ENST00000585548		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000453489	ENST00000317060		TCGA	RV	OV	TCGA-13-0800-01A	FKBP8	chr19	18654296	-	DAND5	chr19	13084203	+
5UTR-3CDS	ENST00000247956	ENST00000355272		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000247956	ENST00000356926		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000247956	ENST00000350812		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000247956	ENST00000345016		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-intron	ENST00000247956	ENST00000590683		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000360385	ENST00000355272		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000360385	ENST00000356926		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000360385	ENST00000350812		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000360385	ENST00000345016		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-intron	ENST00000360385	ENST00000590683		TCGA	RV	OV	TCGA-13-1405-01A	ZNF317	chr19	9251268	+	AP3D1	chr19	2115612	-
5UTR-3CDS	ENST00000271732	ENST00000368995		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000271732	ENST00000368993		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000271732	ENST00000322343		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000271732	ENST00000361824		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-intron	ENST00000271732	ENST00000476530		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000540514	ENST00000368995		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000540514	ENST00000368993		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000540514	ENST00000322343		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000540514	ENST00000361824		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-intron	ENST00000540514	ENST00000476530		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000479757	ENST00000368995		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000479757	ENST00000368993		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000479757	ENST00000322343		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3CDS	ENST00000479757	ENST00000361824		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-intron	ENST00000479757	ENST00000476530		TCGA	RV	OV	TCGA-13-0905-01B	GOLPH3L	chr1	150669468	-	HORMAD1	chr1	150681437	-
5UTR-3UTR	ENST00000317025	ENST00000547990		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000317025	ENST00000546809		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000317025	ENST00000308796		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000433384	ENST00000547990		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000433384	ENST00000546809		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000433384	ENST00000308796		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000527502	ENST00000547990		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000527502	ENST00000546809		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000527502	ENST00000308796		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000316985	ENST00000547990		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000316985	ENST00000546809		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000316985	ENST00000308796		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000525081	ENST00000547990		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000525081	ENST00000546809		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000525081	ENST00000308796		TCGA	RV	OV	TCGA-29-1702-01A	WHSC1L1	chr8	38239317	-	MUCL1	chr12	55248900	+
Frame-shit	ENST00000261192	ENST00000381842		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000261192	ENST00000279573		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000261192	ENST00000440870		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000261192	ENST00000538488		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000538118	ENST00000381842		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000538118	ENST00000279573		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000538118	ENST00000440870		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000538118	ENST00000538488		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000342945	ENST00000381842		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000342945	ENST00000279573		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000342945	ENST00000440870		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000342945	ENST00000538488		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000539282	ENST00000381842		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000539282	ENST00000279573		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000539282	ENST00000440870		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000539282	ENST00000538488		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000539780	ENST00000381842		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
Frame-shit	ENST00000539780	ENST00000279573		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000539780	ENST00000440870		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5CDS-5UTR	ENST00000539780	ENST00000538488		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5UTR-3CDS	ENST00000544418	ENST00000381842		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5UTR-3CDS	ENST00000544418	ENST00000279573		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5UTR-5UTR	ENST00000544418	ENST00000440870		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
5UTR-5UTR	ENST00000544418	ENST00000538488		TCGA	RV	OV	TCGA-25-1870-01A	BCAT1	chr12	24995016	-	PRB3	chr12	11421602	-
In-frame	ENST00000266517	ENST00000595618		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
In-frame	ENST00000266517	ENST00000594824		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
In-frame	ENST00000266517	ENST00000397274		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
5CDS-intron	ENST00000266517	ENST00000593411		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
In-frame	ENST00000335148	ENST00000595618		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
In-frame	ENST00000335148	ENST00000594824		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
In-frame	ENST00000335148	ENST00000397274		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
5CDS-intron	ENST00000335148	ENST00000593411		TCGA	RV	OV	TCGA-OY-A56P-01A	ETNK1	chr12	22778520	+	MYO9B	chr19	17298744	+
5UTR-5UTR	ENST00000313833	ENST00000254301		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
5UTR-intron	ENST00000313833	ENST00000553755		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000313833	ENST00000554715		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000555087	ENST00000254301		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000555087	ENST00000553755		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000555087	ENST00000554715		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000440021	ENST00000254301		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000440021	ENST00000553755		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000440021	ENST00000554715		TCGA	RV	OV	TCGA-59-2355-01A	FBXO34	chr14	55738255	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000443950	ENST00000392149		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000443950	ENST00000316950		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000443950	ENST00000392150		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000443950	ENST00000592490		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000443950	ENST00000589833		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000443950	ENST00000591073		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000544000	ENST00000392149		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000544000	ENST00000316950		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000544000	ENST00000392150		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000544000	ENST00000592490		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000544000	ENST00000589833		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000544000	ENST00000591073		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000357065	ENST00000392149		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000357065	ENST00000316950		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000357065	ENST00000392150		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000357065	ENST00000592490		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000357065	ENST00000589833		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000357065	ENST00000591073		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000356053	ENST00000392149		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000356053	ENST00000316950		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000356053	ENST00000392150		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000356053	ENST00000592490		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000356053	ENST00000589833		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000356053	ENST00000591073		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000337970	ENST00000392149		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000337970	ENST00000316950		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000337970	ENST00000392150		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000337970	ENST00000592490		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000337970	ENST00000589833		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000337970	ENST00000591073		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000498176	ENST00000392149		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000498176	ENST00000316950		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000498176	ENST00000392150		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000498176	ENST00000592490		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-intron	ENST00000498176	ENST00000589833		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
intron-5UTR	ENST00000498176	ENST00000591073		TCGA	RV	OV	TCGA-13-0916-01A	HNRNPF	chr10	43904579	-	ZNF569	chr19	37956375	-
Frame-shit	ENST00000256646	ENST00000368141		TCGA	RV	OV	TCGA-24-1474-01A	NOTCH2	chr1	120478095	-	MNDA	chr1	158815377	+
5CDS-intron	ENST00000256646	ENST00000491210		TCGA	RV	OV	TCGA-24-1474-01A	NOTCH2	chr1	120478095	-	MNDA	chr1	158815377	+
intron-3CDS	ENST00000602566	ENST00000368141		TCGA	RV	OV	TCGA-24-1474-01A	NOTCH2	chr1	120478095	-	MNDA	chr1	158815377	+
intron-intron	ENST00000602566	ENST00000491210		TCGA	RV	OV	TCGA-24-1474-01A	NOTCH2	chr1	120478095	-	MNDA	chr1	158815377	+
intron-3CDS	ENST00000493703	ENST00000368141		TCGA	RV	OV	TCGA-24-1474-01A	NOTCH2	chr1	120478095	-	MNDA	chr1	158815377	+
intron-intron	ENST00000493703	ENST00000491210		TCGA	RV	OV	TCGA-24-1474-01A	NOTCH2	chr1	120478095	-	MNDA	chr1	158815377	+
Frame-shit	ENST00000296051	ENST00000491148		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
Frame-shit	ENST00000296051	ENST00000282957		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
5CDS-3UTR	ENST00000296051	ENST00000498639		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
Frame-shit	ENST00000460120	ENST00000491148		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
Frame-shit	ENST00000460120	ENST00000282957		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
5CDS-3UTR	ENST00000460120	ENST00000498639		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
3UTR-3CDS	ENST00000494327	ENST00000491148		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
3UTR-3CDS	ENST00000494327	ENST00000282957		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
3UTR-3UTR	ENST00000494327	ENST00000498639		TCGA	RV	OV	TCGA-13-1495-01A	HPS3	chr3	148847727	+	CPB1	chr3	148575244	+
In-frame	ENST00000302503	ENST00000476844		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
In-frame	ENST00000302503	ENST00000492590		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000302503	ENST00000466788		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000302503	ENST00000468189		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000302503	ENST00000341848		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000542981	ENST00000476844		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000542981	ENST00000492590		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000542981	ENST00000466788		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000542981	ENST00000468189		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000542981	ENST00000341848		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000534074	ENST00000476844		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000534074	ENST00000492590		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000534074	ENST00000466788		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000534074	ENST00000468189		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000534074	ENST00000341848		TCGA	RV	OV	TCGA-23-2077-01A	MTCH2	chr11	47660251	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000297578	ENST00000541742		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000297578	ENST00000490107		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000297578	ENST00000388985		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000297578	ENST00000366517		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000297578	ENST00000403792		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000543107	ENST00000541742		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000543107	ENST00000490107		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000543107	ENST00000388985		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000543107	ENST00000366517		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000543107	ENST00000403792		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-5UTR	ENST00000523701	ENST00000541742		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-5UTR	ENST00000523701	ENST00000490107		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-5UTR	ENST00000523701	ENST00000388985		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-intron	ENST00000523701	ENST00000366517		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
intron-intron	ENST00000523701	ENST00000403792		TCGA	RV	OV	TCGA-29-1770-01A	SLC25A32	chr8	104419862	-	SMYD3	chr1	246518396	-
5CDS-3UTR	ENST00000263102	ENST00000280772		TCGA	RV	OV	TCGA-04-1517-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000373827		TCGA	RV	OV	TCGA-04-1517-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000355288		TCGA	RV	OV	TCGA-04-1517-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000263102	ENST00000503366		TCGA	RV	OV	TCGA-04-1517-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	OV	TCGA-04-1517-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	OV	TCGA-04-1517-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61789584	-
intron-3CDS	ENST00000503278	ENST00000285599		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
intron-3CDS	ENST00000503278	ENST00000504248		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
intron-3UTR	ENST00000503278	ENST00000504960		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
Frame-shit	ENST00000425103	ENST00000285599		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
Frame-shit	ENST00000425103	ENST00000504248		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
5CDS-3UTR	ENST00000425103	ENST00000504960		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
Frame-shit	ENST00000307659	ENST00000285599		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
Frame-shit	ENST00000307659	ENST00000504248		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
5CDS-3UTR	ENST00000307659	ENST00000504960		TCGA	RV	OV	TCGA-3P-A9WA-01A	KIAA0232	chr4	6878484	+	MAN2B2	chr4	6610834	+
5UTR-3CDS	ENST00000263640	ENST00000253506		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000591814		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000397790		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000587635		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000427363		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000542384		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000318065		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000545796		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000592223		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000329101		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000586434		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000590172		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-3CDS	ENST00000409283	ENST00000253506		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000591814		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000397790		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000587635		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000427363		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000542384		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000318065		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000545796		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000592223		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000329101		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000586434		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000590172		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-3CDS	ENST00000434821	ENST00000253506		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000591814		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000397790		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000587635		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000427363		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000542384		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000318065		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000545796		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000592223		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000329101		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000586434		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000590172		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-3CDS	ENST00000410057	ENST00000253506		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000591814		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000397790		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000587635		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000427363		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000542384		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000318065		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000545796		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000592223		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000329101		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000586434		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000590172		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-3CDS	ENST00000487456	ENST00000253506		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000591814		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000397790		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000587635		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000427363		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000542384		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000318065		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000545796		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000592223		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000329101		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000586434		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000590172		TCGA	RV	OV	TCGA-24-2281-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
Frame-shit	ENST00000242719	ENST00000361249		TCGA	RV	OV	TCGA-04-1341-01A	RNF11	chr1	51702551	+	C8A	chr1	57347118	+
3UTR-3CDS	ENST00000494873	ENST00000361249		TCGA	RV	OV	TCGA-04-1341-01A	RNF11	chr1	51702551	+	C8A	chr1	57347118	+
In-frame	ENST00000301740	ENST00000301738		TCGA	RV	OV	TCGA-24-1470-01A	SRRM2	chr16	2810500	+	KCTD5	chr16	2745936	+
In-frame	ENST00000301740	ENST00000564195		TCGA	RV	OV	TCGA-24-1470-01A	SRRM2	chr16	2810500	+	KCTD5	chr16	2745936	+
5CDS-3UTR	ENST00000301740	ENST00000569689		TCGA	RV	OV	TCGA-24-1470-01A	SRRM2	chr16	2810500	+	KCTD5	chr16	2745936	+
intron-3CDS	ENST00000574593	ENST00000301738		TCGA	RV	OV	TCGA-24-1470-01A	SRRM2	chr16	2810500	+	KCTD5	chr16	2745936	+
intron-3CDS	ENST00000574593	ENST00000564195		TCGA	RV	OV	TCGA-24-1470-01A	SRRM2	chr16	2810500	+	KCTD5	chr16	2745936	+
intron-3UTR	ENST00000574593	ENST00000569689		TCGA	RV	OV	TCGA-24-1470-01A	SRRM2	chr16	2810500	+	KCTD5	chr16	2745936	+
In-frame	ENST00000446165	ENST00000292147		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
In-frame	ENST00000446165	ENST00000600651		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
In-frame	ENST00000343325	ENST00000292147		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
In-frame	ENST00000343325	ENST00000600651		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000458122	ENST00000292147		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000458122	ENST00000600651		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000540038	ENST00000292147		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000540038	ENST00000600651		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
3UTR-3CDS	ENST00000498389	ENST00000292147		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
3UTR-3CDS	ENST00000498389	ENST00000600651		TCGA	RV	OV	TCGA-24-1558-01A	ZNF791	chr19	12721896	+	ETHE1	chr19	44015718	-
In-frame	ENST00000409068	ENST00000264434		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
Frame-shit	ENST00000409068	ENST00000420306		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
5CDS-intron	ENST00000409068	ENST00000470096		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
In-frame	ENST00000409085	ENST00000264434		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
Frame-shit	ENST00000409085	ENST00000420306		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
5CDS-intron	ENST00000409085	ENST00000470096		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
In-frame	ENST00000406297	ENST00000264434		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
Frame-shit	ENST00000406297	ENST00000420306		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
5CDS-intron	ENST00000406297	ENST00000470096		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
intron-3CDS	ENST00000470281	ENST00000264434		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
intron-3CDS	ENST00000470281	ENST00000420306		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
intron-intron	ENST00000470281	ENST00000470096		TCGA	RV	OV	TCGA-24-1423-01A	AAK1	chr2	69783992	-	C2orf42	chr2	70377696	-
In-frame	ENST00000295688	ENST00000368194		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000295688	ENST00000487682		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000295688	ENST00000361409		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000295688	ENST00000315174		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
intron-3CDS	ENST00000368259	ENST00000368194		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
intron-intron	ENST00000368259	ENST00000487682		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
intron-intron	ENST00000368259	ENST00000361409		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
intron-intron	ENST00000368259	ENST00000315174		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
Frame-shit	ENST00000368261	ENST00000368194		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000368261	ENST00000487682		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000368261	ENST00000361409		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000368261	ENST00000315174		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
In-frame	ENST00000472765	ENST00000368194		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000472765	ENST00000487682		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000472765	ENST00000361409		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-intron	ENST00000472765	ENST00000315174		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5UTR-3CDS	ENST00000368256	ENST00000368194		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5UTR-intron	ENST00000368256	ENST00000487682		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5UTR-intron	ENST00000368256	ENST00000361409		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5UTR-intron	ENST00000368256	ENST00000315174		TCGA	RV	OV	TCGA-13-A5FT-01A	CCT3	chr1	156304504	-	ARHGEF11	chr1	156931567	-
5CDS-3UTR	ENST00000383791	ENST00000443029		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000383791	ENST00000383790		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000383791	ENST00000450816		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5CDS-intron	ENST00000383791	ENST00000383789		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5CDS-5UTR	ENST00000383791	ENST00000584799		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000253688	ENST00000443029		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000253688	ENST00000383790		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000253688	ENST00000450816		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000253688	ENST00000383789		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000253688	ENST00000584799		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000426925	ENST00000443029		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000426925	ENST00000383790		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000426925	ENST00000450816		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000426925	ENST00000383789		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000426925	ENST00000584799		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000408919	ENST00000443029		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000408919	ENST00000383790		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000408919	ENST00000450816		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000408919	ENST00000383789		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000408919	ENST00000584799		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-3UTR	ENST00000465894	ENST00000443029		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000465894	ENST00000383790		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000465894	ENST00000450816		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-intron	ENST00000465894	ENST00000383789		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
5UTR-5UTR	ENST00000465894	ENST00000584799		TCGA	RV	OV	TCGA-25-2397-01A	SH3BP5	chr3	15372011	-	METTL6	chr3	15425694	-
In-frame	ENST00000378565	ENST00000509990		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
In-frame	ENST00000378565	ENST00000361059		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
Frame-shit	ENST00000378565	ENST00000504203		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
Frame-shit	ENST00000378565	ENST00000502929		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
Frame-shit	ENST00000378565	ENST00000394800		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378565	ENST00000507197		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378565	ENST00000394805		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378565	ENST00000502499		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378565	ENST00000510056		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378565	ENST00000503811		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
In-frame	ENST00000378549	ENST00000509990		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
In-frame	ENST00000378549	ENST00000361059		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
Frame-shit	ENST00000378549	ENST00000504203		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
Frame-shit	ENST00000378549	ENST00000502929		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
Frame-shit	ENST00000378549	ENST00000394800		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378549	ENST00000507197		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378549	ENST00000394805		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378549	ENST00000502499		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378549	ENST00000510056		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
5CDS-intron	ENST00000378549	ENST00000503811		TCGA	RV	OV	TCGA-13-0799-01A	ITM2B	chr13	48807613	+	MATR3	chr5	138665034	+
In-frame	ENST00000353442	ENST00000389413		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000353442	ENST00000409483		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000353442	ENST00000389416		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000353442	ENST00000389418		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000353442	ENST00000404321		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000359422	ENST00000389413		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000359422	ENST00000409483		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000359422	ENST00000389416		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000359422	ENST00000389418		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000359422	ENST00000404321		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000354505	ENST00000389413		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000354505	ENST00000409483		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000354505	ENST00000389416		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000354505	ENST00000389418		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000354505	ENST00000404321		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000540390	ENST00000389413		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000540390	ENST00000409483		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000540390	ENST00000389416		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000540390	ENST00000389418		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
In-frame	ENST00000540390	ENST00000404321		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000430825	ENST00000389413		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000430825	ENST00000409483		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000430825	ENST00000389416		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000430825	ENST00000389418		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000430825	ENST00000404321		TCGA	RV	OV	TCGA-VG-A8LO-01A	LMBR1	chr7	156516806	-	PTPRN2	chr7	157691429	-
5CDS-intron	ENST00000264833	ENST00000586218		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000593256		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000447337		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000354882		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000586590		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000586956		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000589555		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000587948		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000264833	ENST00000588560		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-intron	ENST00000590841	ENST00000586218		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000593256		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000447337		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000354882		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000586590		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000586956		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000589555		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000587948		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000590841	ENST00000588560		TCGA	RV	OV	TCGA-09-0366-01A	OLFM2	chr19	10046980	-	TMEM205	chr19	11456304	-
5UTR-3CDS	ENST00000600714	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000600714	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000601257	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000601257	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000301096	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000301096	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000544146	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000544146	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000536937	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000536937	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000597597	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000597597	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000541777	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000541777	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000545872	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000545872	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000594682	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000594682	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000391789	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000391789	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000596930	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000596930	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000597161	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
intron-3CDS	ENST00000597161	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000598536	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000598536	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000600457	ENST00000446034		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
5UTR-3CDS	ENST00000600457	ENST00000432826		TCGA	RV	OV	TCGA-59-2348-01A	ZNF83	chr19	53158814	-	TARM1	chr19	54573414	-
Frame-shit	ENST00000246548	ENST00000246535		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
In-frame	ENST00000246548	ENST00000587065		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
Frame-shit	ENST00000439527	ENST00000246535		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
In-frame	ENST00000439527	ENST00000587065		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
intron-3CDS	ENST00000592791	ENST00000246535		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
intron-3CDS	ENST00000592791	ENST00000587065		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
intron-3CDS	ENST00000588585	ENST00000246535		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
intron-3CDS	ENST00000588585	ENST00000587065		TCGA	RV	OV	TCGA-29-1697-01A	UBA2	chr19	34936026	+	PDCD2L	chr19	34916895	+
intron-3UTR	ENST00000264899	ENST00000515137		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
intron-3UTR	ENST00000264899	ENST00000265498		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
intron-intron	ENST00000264899	ENST00000506797		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000325942	ENST00000515137		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000325942	ENST00000265498		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000325942	ENST00000506797		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000264895	ENST00000515137		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000264895	ENST00000265498		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000264895	ENST00000506797		TCGA	RV	OV	TCGA-29-A5NZ-01A	FRAS1	chr4	79322041	+	MGST2	chr4	140616351	+
Frame-shit	ENST00000532317	ENST00000393324		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000532317	ENST00000359636		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000532317	ENST00000543262		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000532317	ENST00000323418		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
5CDS-5UTR	ENST00000532317	ENST00000525957		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000526033	ENST00000393324		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000526033	ENST00000359636		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000526033	ENST00000543262		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000526033	ENST00000323418		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
5CDS-5UTR	ENST00000526033	ENST00000525957		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000393346	ENST00000393324		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000393346	ENST00000359636		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000393346	ENST00000543262		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000393346	ENST00000323418		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
5CDS-5UTR	ENST00000393346	ENST00000525957		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000528398	ENST00000393324		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000528398	ENST00000359636		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000528398	ENST00000543262		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000528398	ENST00000323418		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
5CDS-5UTR	ENST00000528398	ENST00000525957		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000356360	ENST00000393324		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000356360	ENST00000359636		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000356360	ENST00000543262		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
Frame-shit	ENST00000356360	ENST00000323418		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
5CDS-5UTR	ENST00000356360	ENST00000525957		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
intron-3CDS	ENST00000528411	ENST00000393324		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
intron-3CDS	ENST00000528411	ENST00000359636		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
intron-3CDS	ENST00000528411	ENST00000543262		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
intron-3CDS	ENST00000528411	ENST00000323418		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
intron-5UTR	ENST00000528411	ENST00000525957		TCGA	RV	OV	TCGA-VG-A8LO-01A	PICALM	chr11	85707869	-	ME3	chr11	86198482	-
In-frame	ENST00000263102	ENST00000280772		TCGA	RV	OV	TCGA-24-2033-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802514	-
Frame-shit	ENST00000263102	ENST00000373827		TCGA	RV	OV	TCGA-24-2033-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802514	-
Frame-shit	ENST00000263102	ENST00000355288		TCGA	RV	OV	TCGA-24-2033-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802514	-
In-frame	ENST00000263102	ENST00000503366		TCGA	RV	OV	TCGA-24-2033-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802514	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	OV	TCGA-24-2033-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802514	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	OV	TCGA-24-2033-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61802514	-
Frame-shit	ENST00000300784	ENST00000337014		TCGA	RV	OV	TCGA-VG-A8LO-01A	FN3K	chr17	80693653	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000300784	ENST00000577944		TCGA	RV	OV	TCGA-VG-A8LO-01A	FN3K	chr17	80693653	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000300784	ENST00000327949		TCGA	RV	OV	TCGA-VG-A8LO-01A	FN3K	chr17	80693653	+	HEXDC	chr17	80397507	+
intron-3CDS	ENST00000572813	ENST00000337014		TCGA	RV	OV	TCGA-VG-A8LO-01A	FN3K	chr17	80693653	+	HEXDC	chr17	80397507	+
intron-3CDS	ENST00000572813	ENST00000577944		TCGA	RV	OV	TCGA-VG-A8LO-01A	FN3K	chr17	80693653	+	HEXDC	chr17	80397507	+
intron-3CDS	ENST00000572813	ENST00000327949		TCGA	RV	OV	TCGA-VG-A8LO-01A	FN3K	chr17	80693653	+	HEXDC	chr17	80397507	+
Frame-shit	ENST00000318083	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5CDS-intron	ENST00000318083	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-3CDS	ENST00000356751	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-intron	ENST00000356751	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-3CDS	ENST00000594582	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-intron	ENST00000594582	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-3CDS	ENST00000377367	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-intron	ENST00000377367	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-3CDS	ENST00000419611	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-intron	ENST00000419611	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-01A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
Frame-shit	ENST00000360843	ENST00000539909		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000360843	ENST00000286621		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000360843	ENST00000372734		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000360843	ENST00000541550		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000360843	ENST00000467840		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000431350	ENST00000539909		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000431350	ENST00000286621		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000431350	ENST00000372734		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000431350	ENST00000541550		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000431350	ENST00000467840		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000442919	ENST00000539909		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000442919	ENST00000286621		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000442919	ENST00000372734		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000442919	ENST00000541550		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000442919	ENST00000467840		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000521943	ENST00000539909		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000521943	ENST00000286621		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000521943	ENST00000372734		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
Frame-shit	ENST00000521943	ENST00000541550		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000521943	ENST00000467840		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000434911	ENST00000539909		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000434911	ENST00000286621		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000434911	ENST00000372734		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000434911	ENST00000541550		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
intron-intron	ENST00000434911	ENST00000467840		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000486857	ENST00000539909		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000486857	ENST00000286621		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000486857	ENST00000372734		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000486857	ENST00000541550		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5UTR-intron	ENST00000486857	ENST00000467840		TCGA	RV	OV	TCGA-59-A5PD-01A	TLK1	chr2	171939291	-	ADK	chr10	76429941	+
5CDS-5UTR	ENST00000298198	ENST00000488498		TCGA	RV	OV	TCGA-23-1107-01A	PGM2L1	chr11	74079537	-	C1orf61	chr1	156374393	-
5CDS-5UTR	ENST00000298198	ENST00000368243		TCGA	RV	OV	TCGA-23-1107-01A	PGM2L1	chr11	74079537	-	C1orf61	chr1	156374393	-
intron-3CDS	ENST00000361236	ENST00000260227		TCGA	RV	OV	TCGA-04-1348-01A	TMEM123	chr11	102319543	-	MMP7	chr11	102395795	-
In-frame	ENST00000398136	ENST00000260227		TCGA	RV	OV	TCGA-04-1348-01A	TMEM123	chr11	102319543	-	MMP7	chr11	102395795	-
5UTR-3CDS	ENST00000532161	ENST00000260227		TCGA	RV	OV	TCGA-04-1348-01A	TMEM123	chr11	102319543	-	MMP7	chr11	102395795	-
5UTR-3CDS	ENST00000525577	ENST00000260227		TCGA	RV	OV	TCGA-04-1348-01A	TMEM123	chr11	102319543	-	MMP7	chr11	102395795	-
In-frame	ENST00000305031	ENST00000305108		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
In-frame	ENST00000305031	ENST00000397265		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000305031	ENST00000542920		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000305031	ENST00000433832		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
5CDS-intron	ENST00000305031	ENST00000537416		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
3UTR-3CDS	ENST00000507545	ENST00000305108		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
3UTR-3CDS	ENST00000507545	ENST00000397265		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
3UTR-5UTR	ENST00000507545	ENST00000542920		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
3UTR-5UTR	ENST00000507545	ENST00000433832		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
3UTR-intron	ENST00000507545	ENST00000537416		TCGA	RV	OV	TCGA-24-1104-01A	CHSY3	chr5	129244053	+	NINJ2	chr12	675344	-
5UTR-3CDS	ENST00000216181	ENST00000216185		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
5UTR-intron	ENST00000216181	ENST00000416967		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
5UTR-intron	ENST00000216181	ENST00000487725		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
5UTR-intron	ENST00000216181	ENST00000403313		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-3CDS	ENST00000475726	ENST00000216185		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-intron	ENST00000475726	ENST00000416967		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-intron	ENST00000475726	ENST00000487725		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-intron	ENST00000475726	ENST00000403313		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-3CDS	ENST00000401701	ENST00000216185		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-intron	ENST00000401701	ENST00000416967		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-intron	ENST00000401701	ENST00000487725		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
intron-intron	ENST00000401701	ENST00000403313		TCGA	RV	OV	TCGA-23-1107-01A	MYH9	chr22	36783852	-	TXN2	chr22	36876884	-
5UTR-5UTR	ENST00000511725	ENST00000265192		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
5UTR-intron	ENST00000511725	ENST00000511381		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
5UTR-5UTR	ENST00000511725	ENST00000511706		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
5UTR-5UTR	ENST00000511725	ENST00000394795		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
5UTR-5UTR	ENST00000511725	ENST00000510080		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000253815	ENST00000265192		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-intron	ENST00000253815	ENST00000511381		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000253815	ENST00000511706		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000253815	ENST00000394795		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000253815	ENST00000510080		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000398733	ENST00000265192		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-intron	ENST00000398733	ENST00000511381		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000398733	ENST00000511706		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000398733	ENST00000394795		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000398733	ENST00000510080		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000505548	ENST00000265192		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-intron	ENST00000505548	ENST00000511381		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000505548	ENST00000511706		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000505548	ENST00000394795		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000505548	ENST00000510080		TCGA	RV	OV	TCGA-61-1738-01A	UBE2D2	chr5	138906197	+	PAIP2	chr5	138699448	+
In-frame	ENST00000334018	ENST00000216029		TCGA	RV	OV	TCGA-04-1341-01A	EMID1	chr22	29630338	+	CBY1	chr22	39069164	+
In-frame	ENST00000404820	ENST00000216029		TCGA	RV	OV	TCGA-04-1341-01A	EMID1	chr22	29630338	+	CBY1	chr22	39069164	+
In-frame	ENST00000404755	ENST00000216029		TCGA	RV	OV	TCGA-04-1341-01A	EMID1	chr22	29630338	+	CBY1	chr22	39069164	+
intron-3CDS	ENST00000484039	ENST00000216029		TCGA	RV	OV	TCGA-04-1341-01A	EMID1	chr22	29630338	+	CBY1	chr22	39069164	+
intron-3CDS	ENST00000405201	ENST00000269554		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000405201	ENST00000311500		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-3CDS	ENST00000404621	ENST00000269554		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000404621	ENST00000311500		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-3CDS	ENST00000404121	ENST00000269554		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000404121	ENST00000311500		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-3CDS	ENST00000356219	ENST00000269554		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000356219	ENST00000311500		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-3CDS	ENST00000397355	ENST00000269554		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000397355	ENST00000311500		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-3CDS	ENST00000429285	ENST00000269554		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
intron-5UTR	ENST00000429285	ENST00000311500		TCGA	RV	OV	TCGA-13-A5FT-01A	NCOR2	chr12	125051854	-	PIP4K2B	chr17	36943173	-
Frame-shit	ENST00000373839	ENST00000371370		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
Frame-shit	ENST00000373839	ENST00000319223		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
5CDS-intron	ENST00000373839	ENST00000477905		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
3UTR-3CDS	ENST00000493669	ENST00000371370		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
3UTR-3CDS	ENST00000493669	ENST00000319223		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
3UTR-intron	ENST00000493669	ENST00000477905		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
intron-3CDS	ENST00000373836	ENST00000371370		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
intron-3CDS	ENST00000373836	ENST00000319223		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
intron-intron	ENST00000373836	ENST00000477905		TCGA	RV	OV	TCGA-29-A5NZ-01A	PHACTR4	chr1	28733974	+	LRRC42	chr1	54426029	+
In-frame	ENST00000425690	ENST00000392226		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
In-frame	ENST00000425690	ENST00000262626		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
In-frame	ENST00000425690	ENST00000597419		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
5CDS-intron	ENST00000425690	ENST00000600675		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
intron-3CDS	ENST00000344956	ENST00000392226		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
intron-3CDS	ENST00000344956	ENST00000262626		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
intron-3CDS	ENST00000344956	ENST00000597419		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
intron-intron	ENST00000344956	ENST00000600675		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
In-frame	ENST00000403059	ENST00000392226		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
In-frame	ENST00000403059	ENST00000262626		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
In-frame	ENST00000403059	ENST00000597419		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
5CDS-intron	ENST00000403059	ENST00000600675		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
Frame-shit	ENST00000406449	ENST00000392226		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
Frame-shit	ENST00000406449	ENST00000262626		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
Frame-shit	ENST00000406449	ENST00000597419		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
5CDS-intron	ENST00000406449	ENST00000600675		TCGA	RV	OV	TCGA-25-1324-01A	PVR	chr19	45162033	+	HPN	chr19	35556154	+
5CDS-5UTR	ENST00000255977	ENST00000393008		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000255977	ENST00000324787		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000255977	ENST00000472343		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000255977	ENST00000496958		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000255977	ENST00000469351		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000255977	ENST00000467334		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000437223	ENST00000393008		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000437223	ENST00000324787		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-intron	ENST00000437223	ENST00000472343		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000437223	ENST00000496958		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000437223	ENST00000469351		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-intron	ENST00000437223	ENST00000467334		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000474576	ENST00000393008		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000474576	ENST00000324787		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-intron	ENST00000474576	ENST00000472343		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000474576	ENST00000496958		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000474576	ENST00000469351		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-intron	ENST00000474576	ENST00000467334		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000480552	ENST00000393008		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000480552	ENST00000324787		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-intron	ENST00000480552	ENST00000472343		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000480552	ENST00000496958		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-5UTR	ENST00000480552	ENST00000469351		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
intron-intron	ENST00000480552	ENST00000467334		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000443720	ENST00000393008		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000443720	ENST00000324787		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000443720	ENST00000472343		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000443720	ENST00000496958		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000443720	ENST00000469351		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000443720	ENST00000467334		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000481705	ENST00000393008		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000481705	ENST00000324787		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-intron	ENST00000481705	ENST00000472343		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000481705	ENST00000496958		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-5UTR	ENST00000481705	ENST00000469351		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5UTR-intron	ENST00000481705	ENST00000467334		TCGA	RV	OV	TCGA-36-1577-01A	MKRN1	chr7	140178960	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000254066	ENST00000430627		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000254066	ENST00000447079		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000254066	ENST00000559545		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394089	ENST00000430627		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394089	ENST00000447079		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394089	ENST00000559545		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
intron-intron	ENST00000425707	ENST00000430627		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
intron-intron	ENST00000425707	ENST00000447079		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
intron-intron	ENST00000425707	ENST00000559545		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394086	ENST00000430627		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394086	ENST00000447079		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394086	ENST00000559545		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394081	ENST00000430627		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394081	ENST00000447079		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
5CDS-intron	ENST00000394081	ENST00000559545		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
intron-intron	ENST00000420042	ENST00000430627		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
intron-intron	ENST00000420042	ENST00000447079		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
intron-intron	ENST00000420042	ENST00000559545		TCGA	RV	OV	TCGA-3P-A9WA-01A	RARA	chr17	38504716	+	CDK12	chr17	37686857	+
In-frame	ENST00000356136	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
Frame-shit	ENST00000356136	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
Frame-shit	ENST00000356136	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5CDS-5UTR	ENST00000356136	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5CDS-5UTR	ENST00000356136	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5CDS-5UTR	ENST00000356136	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5UTR-3CDS	ENST00000528420	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5UTR-3CDS	ENST00000528420	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5UTR-3CDS	ENST00000528420	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5UTR-5UTR	ENST00000528420	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5UTR-5UTR	ENST00000528420	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
5UTR-5UTR	ENST00000528420	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000533454	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000533454	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000533454	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000533454	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000533454	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000533454	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000531818	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000531818	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000531818	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000531818	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000531818	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000531818	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000532130	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000532130	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000532130	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000532130	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000532130	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000532130	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000539288	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000539288	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000539288	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000539288	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000539288	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000539288	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000525872	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000525872	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000525872	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000525872	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000525872	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000525872	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000538870	ENST00000341846		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000538870	ENST00000524816		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-3CDS	ENST00000538870	ENST00000541857		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000538870	ENST00000525887		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000538870	ENST00000528870		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
intron-5UTR	ENST00000538870	ENST00000529044		TCGA	RV	OV	TCGA-23-1030-01A	UVRAG	chr11	75572825	+	TRIM29	chr11	119983184	-
Frame-shit	ENST00000458501	ENST00000335523		TCGA	RV	OV	TCGA-31-1950-01A	HGSNAT	chr8	43037403	+	VSTM2B	chr19	30054753	+
Frame-shit	ENST00000379644	ENST00000335523		TCGA	RV	OV	TCGA-31-1950-01A	HGSNAT	chr8	43037403	+	VSTM2B	chr19	30054753	+
Frame-shit	ENST00000297798	ENST00000335523		TCGA	RV	OV	TCGA-31-1950-01A	HGSNAT	chr8	43037403	+	VSTM2B	chr19	30054753	+
Frame-shit	ENST00000521576	ENST00000335523		TCGA	RV	OV	TCGA-31-1950-01A	HGSNAT	chr8	43037403	+	VSTM2B	chr19	30054753	+
In-frame	ENST00000488633	ENST00000258439		TCGA	RV	OV	TCGA-WR-A838-01A	CIAO1	chr2	96932227	+	TMEM127	chr2	96920735	-
In-frame	ENST00000488633	ENST00000432959		TCGA	RV	OV	TCGA-WR-A838-01A	CIAO1	chr2	96932227	+	TMEM127	chr2	96920735	-
5CDS-5UTR	ENST00000488633	ENST00000435268		TCGA	RV	OV	TCGA-WR-A838-01A	CIAO1	chr2	96932227	+	TMEM127	chr2	96920735	-
3UTR-3CDS	ENST00000469320	ENST00000258439		TCGA	RV	OV	TCGA-WR-A838-01A	CIAO1	chr2	96932227	+	TMEM127	chr2	96920735	-
3UTR-3CDS	ENST00000469320	ENST00000432959		TCGA	RV	OV	TCGA-WR-A838-01A	CIAO1	chr2	96932227	+	TMEM127	chr2	96920735	-
3UTR-5UTR	ENST00000469320	ENST00000435268		TCGA	RV	OV	TCGA-WR-A838-01A	CIAO1	chr2	96932227	+	TMEM127	chr2	96920735	-
5CDS-intron	ENST00000321030	ENST00000468076		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000321030	ENST00000391767		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000321030	ENST00000222212		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000321030	ENST00000391766		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000419967	ENST00000468076		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000419967	ENST00000391767		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000419967	ENST00000222212		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000419967	ENST00000391766		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000391755	ENST00000468076		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000391755	ENST00000391767		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000391755	ENST00000222212		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
5CDS-intron	ENST00000391755	ENST00000391766		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
3UTR-intron	ENST00000498612	ENST00000468076		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
3UTR-intron	ENST00000498612	ENST00000391767		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
3UTR-intron	ENST00000498612	ENST00000222212		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
3UTR-intron	ENST00000498612	ENST00000391766		TCGA	RV	OV	TCGA-13-A5FT-01A	PRPF31	chr19	54622013	+	CACNG7	chr19	54445290	+
Frame-shit	ENST00000336735	ENST00000340080		TCGA	RV	OV	TCGA-59-A5PD-01A	SEL1L	chr14	82000019	-	MIOS	chr7	7625267	+
Frame-shit	ENST00000336735	ENST00000405785		TCGA	RV	OV	TCGA-59-A5PD-01A	SEL1L	chr14	82000019	-	MIOS	chr7	7625267	+
5CDS-intron	ENST00000336735	ENST00000461907		TCGA	RV	OV	TCGA-59-A5PD-01A	SEL1L	chr14	82000019	-	MIOS	chr7	7625267	+
Frame-shit	ENST00000555824	ENST00000340080		TCGA	RV	OV	TCGA-59-A5PD-01A	SEL1L	chr14	82000019	-	MIOS	chr7	7625267	+
Frame-shit	ENST00000555824	ENST00000405785		TCGA	RV	OV	TCGA-59-A5PD-01A	SEL1L	chr14	82000019	-	MIOS	chr7	7625267	+
5CDS-intron	ENST00000555824	ENST00000461907		TCGA	RV	OV	TCGA-59-A5PD-01A	SEL1L	chr14	82000019	-	MIOS	chr7	7625267	+
In-frame	ENST00000381668	ENST00000324989		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
In-frame	ENST00000381668	ENST00000397890		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
5CDS-5UTR	ENST00000381668	ENST00000511535		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
5CDS-5UTR	ENST00000381668	ENST00000512574		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
In-frame	ENST00000264449	ENST00000324989		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
In-frame	ENST00000264449	ENST00000397890		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
5CDS-5UTR	ENST00000264449	ENST00000511535		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
5CDS-5UTR	ENST00000264449	ENST00000512574		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
intron-3CDS	ENST00000510289	ENST00000324989		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
intron-3CDS	ENST00000510289	ENST00000397890		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
intron-5UTR	ENST00000510289	ENST00000511535		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
intron-5UTR	ENST00000510289	ENST00000512574		TCGA	RV	OV	TCGA-25-1324-01A	ATP8A1	chr4	42626553	-	CRMP1	chr4	5844888	-
5CDS-intron	ENST00000339362	ENST00000409559		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000339362	ENST00000263655		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-5UTR	ENST00000339362	ENST00000481714		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000339362	ENST00000409862		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000261908	ENST00000409559		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000261908	ENST00000263655		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-5UTR	ENST00000261908	ENST00000481714		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000261908	ENST00000409862		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000558964	ENST00000409559		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000558964	ENST00000263655		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-5UTR	ENST00000558964	ENST00000481714		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000558964	ENST00000409862		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000560262	ENST00000409559		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000560262	ENST00000263655		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-5UTR	ENST00000560262	ENST00000481714		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
5CDS-intron	ENST00000560262	ENST00000409862		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
intron-intron	ENST00000560352	ENST00000409559		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
intron-intron	ENST00000560352	ENST00000263655		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
intron-5UTR	ENST00000560352	ENST00000481714		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
intron-intron	ENST00000560352	ENST00000409862		TCGA	RV	OV	TCGA-25-1326-01A	NEO1	chr15	73428368	+	CNRIP1	chr2	68521158	-
Frame-shit	ENST00000318083	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5CDS-intron	ENST00000318083	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-3CDS	ENST00000356751	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-intron	ENST00000356751	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-3CDS	ENST00000594582	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
intron-intron	ENST00000594582	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-3CDS	ENST00000377367	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-intron	ENST00000377367	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-3CDS	ENST00000419611	ENST00000222145		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5UTR-intron	ENST00000419611	ENST00000594232		TCGA	RV	OV	TCGA-13-1489-02A	MAMSTR	chr19	49222231	-	RASIP1	chr19	49230687	-
5CDS-5UTR	ENST00000230461	ENST00000393004		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-5UTR	ENST00000230461	ENST00000237172		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-intron	ENST00000230461	ENST00000498523		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-intron	ENST00000230461	ENST00000370020		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
intron-5UTR	ENST00000370050	ENST00000393004		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
intron-5UTR	ENST00000370050	ENST00000237172		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
intron-intron	ENST00000370050	ENST00000498523		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
intron-intron	ENST00000370050	ENST00000370020		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-5UTR	ENST00000475111	ENST00000393004		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-5UTR	ENST00000475111	ENST00000237172		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-intron	ENST00000475111	ENST00000498523		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
5CDS-intron	ENST00000475111	ENST00000370020		TCGA	RV	OV	TCGA-13-A5FT-01A	TMEM30A	chr6	75994118	-	FILIP1	chr6	76124694	-
In-frame	ENST00000260197	ENST00000278935		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
5CDS-3UTR	ENST00000260197	ENST00000533706		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
3UTR-3CDS	ENST00000532451	ENST00000278935		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
3UTR-3UTR	ENST00000532451	ENST00000533706		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3CDS	ENST00000525532	ENST00000278935		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3UTR	ENST00000525532	ENST00000533706		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3CDS	ENST00000532694	ENST00000278935		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3UTR	ENST00000532694	ENST00000533706		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3CDS	ENST00000534286	ENST00000278935		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3UTR	ENST00000534286	ENST00000533706		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3CDS	ENST00000527934	ENST00000278935		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
intron-3UTR	ENST00000527934	ENST00000533706		TCGA	RV	OV	TCGA-VG-A8LO-01A	SORL1	chr11	121367758	+	CEP164	chr11	117251330	+
Frame-shit	ENST00000367278	ENST00000367282		TCGA	RV	OV	TCGA-VG-A8LO-01A	LGR6	chr1	202205121	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000255432	ENST00000367282		TCGA	RV	OV	TCGA-VG-A8LO-01A	LGR6	chr1	202205121	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000439764	ENST00000367282		TCGA	RV	OV	TCGA-VG-A8LO-01A	LGR6	chr1	202205121	+	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000308543	ENST00000367282		TCGA	RV	OV	TCGA-VG-A8LO-01A	LGR6	chr1	202205121	+	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000395808	ENST00000586746		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000395808	ENST00000215587		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
5CDS-5UTR	ENST00000395808	ENST00000585838		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
In-frame	ENST00000589119	ENST00000586746		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
In-frame	ENST00000589119	ENST00000215587		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
5CDS-5UTR	ENST00000589119	ENST00000585838		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000312090	ENST00000586746		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000312090	ENST00000215587		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
5CDS-5UTR	ENST00000312090	ENST00000585838		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000269814	ENST00000586746		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000269814	ENST00000215587		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
5CDS-5UTR	ENST00000269814	ENST00000585838		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000325464	ENST00000586746		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
Frame-shit	ENST00000325464	ENST00000215587		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
5CDS-5UTR	ENST00000325464	ENST00000585838		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
intron-3CDS	ENST00000606828	ENST00000586746		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
intron-3CDS	ENST00000606828	ENST00000215587		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
intron-5UTR	ENST00000606828	ENST00000585838		TCGA	RV	OV	TCGA-13-A5FT-01A	MED16	chr19	879937	-	POLR2E	chr19	1089550	-
In-frame	ENST00000446256	ENST00000307092		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000446256	ENST00000307076		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000446256	ENST00000422318		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000446256	ENST00000459839		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
5CDS-intron	ENST00000446256	ENST00000490681		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000445061	ENST00000307092		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000445061	ENST00000307076		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000445061	ENST00000422318		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000445061	ENST00000459839		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
5CDS-intron	ENST00000445061	ENST00000490681		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
intron-3CDS	ENST00000476446	ENST00000307092		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
intron-3CDS	ENST00000476446	ENST00000307076		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
intron-3CDS	ENST00000476446	ENST00000422318		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
intron-3CDS	ENST00000476446	ENST00000459839		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
intron-intron	ENST00000476446	ENST00000490681		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000348968	ENST00000307092		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000348968	ENST00000307076		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000348968	ENST00000422318		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000348968	ENST00000459839		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
5CDS-intron	ENST00000348968	ENST00000490681		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000457607	ENST00000307092		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000457607	ENST00000307076		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000457607	ENST00000422318		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
In-frame	ENST00000457607	ENST00000459839		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
5CDS-intron	ENST00000457607	ENST00000490681		TCGA	RV	OV	TCGA-25-1326-01A	DHX30	chr3	47870624	+	NT5DC2	chr3	52562327	-
5UTR-3CDS	ENST00000306749	ENST00000392347		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
5UTR-3CDS	ENST00000306749	ENST00000389641		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
5UTR-intron	ENST00000306749	ENST00000392346		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
5UTR-intron	ENST00000306749	ENST00000327026		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
5UTR-intron	ENST00000306749	ENST00000392343		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000579758	ENST00000392347		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000579758	ENST00000389641		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
intron-intron	ENST00000579758	ENST00000392346		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
intron-intron	ENST00000579758	ENST00000327026		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
intron-intron	ENST00000579758	ENST00000392343		TCGA	RV	OV	TCGA-13-1512-01A	FASN	chr17	80055997	-	CCDC57	chr17	80059742	-
5UTR-3CDS	ENST00000339093	ENST00000246801		TCGA	LD	OV	TCGA-04-1331-01A	NOSIP	chr19	50083772	-	TSKS	chr19	50265489	-
5UTR-intron	ENST00000339093	ENST00000358830		TCGA	LD	OV	TCGA-04-1331-01A	NOSIP	chr19	50083772	-	TSKS	chr19	50265489	-
5UTR-3CDS	ENST00000596358	ENST00000246801		TCGA	LD	OV	TCGA-04-1331-01A	NOSIP	chr19	50083772	-	TSKS	chr19	50265489	-
5UTR-intron	ENST00000596358	ENST00000358830		TCGA	LD	OV	TCGA-04-1331-01A	NOSIP	chr19	50083772	-	TSKS	chr19	50265489	-
5UTR-3CDS	ENST00000391853	ENST00000246801		TCGA	LD	OV	TCGA-04-1331-01A	NOSIP	chr19	50083772	-	TSKS	chr19	50265489	-
5UTR-intron	ENST00000391853	ENST00000358830		TCGA	LD	OV	TCGA-04-1331-01A	NOSIP	chr19	50083772	-	TSKS	chr19	50265489	-
In-frame	ENST00000361427	ENST00000319394		TCGA	LD	OV	TCGA-04-1337-01A	HMGN2	chr1	26801158	+	WDTC1	chr1	27614165	+
In-frame	ENST00000361427	ENST00000361771		TCGA	LD	OV	TCGA-04-1337-01A	HMGN2	chr1	26801158	+	WDTC1	chr1	27614165	+
3UTR-3CDS	ENST00000493418	ENST00000319394		TCGA	LD	OV	TCGA-04-1337-01A	HMGN2	chr1	26801158	+	WDTC1	chr1	27614165	+
3UTR-3CDS	ENST00000493418	ENST00000361771		TCGA	LD	OV	TCGA-04-1337-01A	HMGN2	chr1	26801158	+	WDTC1	chr1	27614165	+
intron-3CDS	ENST00000568630	ENST00000389629		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
intron-3UTR	ENST00000568630	ENST00000462276		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
In-frame	ENST00000545763	ENST00000389629		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
5CDS-3UTR	ENST00000545763	ENST00000462276		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
In-frame	ENST00000389936	ENST00000389629		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
5CDS-3UTR	ENST00000389936	ENST00000462276		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
In-frame	ENST00000219905	ENST00000389629		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
5CDS-3UTR	ENST00000219905	ENST00000462276		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
In-frame	ENST00000566586	ENST00000389629		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
5CDS-3UTR	ENST00000566586	ENST00000462276		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
In-frame	ENST00000570161	ENST00000389629		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
5CDS-3UTR	ENST00000570161	ENST00000462276		TCGA	LD	OV	TCGA-04-1337-01A	MGA	chr15	42028896	+	RTF1	chr15	41730519	+
3UTR-3UTR	ENST00000313949	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000313949	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371098	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371075	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371100	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371099	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371102	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000464624	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000306120	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371095	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000371085	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000354359	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000265620	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
3UTR-3UTR	ENST00000306090	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000381395		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000381406		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000416167		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000300632		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000434045		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000381392		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000381389		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
intron-3UTR	ENST00000371081	ENST00000418738		TCGA	LD	OV	TCGA-04-1338-01A	GNAS	chr20	57486149	+	IGF2	chr11	2154012	-
5CDS-5UTR	ENST00000345136	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000345136	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000345136	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000345136	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000357649	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000357649	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000357649	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000357649	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000354589	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000354589	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000354589	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000354589	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000398774	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000398774	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000398774	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000398774	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000322810	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000322810	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000322810	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000322810	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000354958	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000354958	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000354958	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000354958	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000356346	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000356346	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000356346	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000356346	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000436759	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000436759	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000436759	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000436759	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000527096	ENST00000361379		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000527096	ENST00000336092		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-5UTR	ENST00000527096	ENST00000555948		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
5CDS-intron	ENST00000527096	ENST00000367312		TCGA	LD	OV	TCGA-04-1338-01A	PLEC	chr8	145000952	-	TNNI1	chr1	201390854	-
intron-3CDS	ENST00000414318	ENST00000357847		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000414318	ENST00000344492		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000414318	ENST00000275235		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000414318	ENST00000367598		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000414318	ENST00000494282		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000414318	ENST00000367596		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000253692	ENST00000357847		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000253692	ENST00000344492		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000253692	ENST00000275235		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000253692	ENST00000367598		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000253692	ENST00000494282		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000253692	ENST00000367596		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
5UTR-3CDS	ENST00000429383	ENST00000357847		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
5UTR-3CDS	ENST00000429383	ENST00000344492		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
5UTR-3CDS	ENST00000429383	ENST00000275235		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
5UTR-intron	ENST00000429383	ENST00000367598		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
5UTR-intron	ENST00000429383	ENST00000494282		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
5UTR-intron	ENST00000429383	ENST00000367596		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000446818	ENST00000357847		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000446818	ENST00000344492		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000446818	ENST00000275235		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000446818	ENST00000367598		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000446818	ENST00000494282		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000446818	ENST00000367596		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000429924	ENST00000357847		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000429924	ENST00000344492		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-3CDS	ENST00000429924	ENST00000275235		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000429924	ENST00000367598		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000429924	ENST00000494282		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
intron-intron	ENST00000429924	ENST00000367596		TCGA	LD	OV	TCGA-04-1338-01A	TBC1D5	chr3	17783973	-	AIG1	chr6	143605247	+
Frame-shit	ENST00000310955	ENST00000373001		TCGA	LD	OV	TCGA-04-1341-01A	CDC20	chr1	43826916	+	RRAGC	chr1	39311759	-
5CDS-5UTR	ENST00000310955	ENST00000474456		TCGA	LD	OV	TCGA-04-1341-01A	CDC20	chr1	43826916	+	RRAGC	chr1	39311759	-
Frame-shit	ENST00000372462	ENST00000373001		TCGA	LD	OV	TCGA-04-1341-01A	CDC20	chr1	43826916	+	RRAGC	chr1	39311759	-
5CDS-5UTR	ENST00000372462	ENST00000474456		TCGA	LD	OV	TCGA-04-1341-01A	CDC20	chr1	43826916	+	RRAGC	chr1	39311759	-
intron-3CDS	ENST00000478882	ENST00000373001		TCGA	LD	OV	TCGA-04-1341-01A	CDC20	chr1	43826916	+	RRAGC	chr1	39311759	-
intron-5UTR	ENST00000478882	ENST00000474456		TCGA	LD	OV	TCGA-04-1341-01A	CDC20	chr1	43826916	+	RRAGC	chr1	39311759	-
5CDS-intron	ENST00000342085	ENST00000455114		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000342085	ENST00000450020		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000342085	ENST00000005995		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-3UTR	ENST00000342085	ENST00000575739		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000441549	ENST00000455114		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000441549	ENST00000450020		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000441549	ENST00000005995		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-3UTR	ENST00000441549	ENST00000575739		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000268673	ENST00000455114		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000268673	ENST00000450020		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000268673	ENST00000005995		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-3UTR	ENST00000268673	ENST00000575739		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000354836	ENST00000455114		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000354836	ENST00000450020		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000354836	ENST00000005995		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-3UTR	ENST00000354836	ENST00000575739		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000389224	ENST00000455114		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000389224	ENST00000450020		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-intron	ENST00000389224	ENST00000005995		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
5CDS-3UTR	ENST00000389224	ENST00000575739		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
intron-intron	ENST00000471311	ENST00000455114		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
intron-intron	ENST00000471311	ENST00000450020		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
intron-intron	ENST00000471311	ENST00000005995		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
intron-3UTR	ENST00000471311	ENST00000575739		TCGA	LD	OV	TCGA-04-1347-01A	PDPK1	chr16	2636894	+	PRSS21	chr16	2875971	+
Frame-shit	ENST00000548724	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000548724	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000548724	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000396700	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000396700	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000396700	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000323944	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000323944	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000323944	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000419632	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000419632	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000419632	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000546511	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000546511	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000546511	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000550887	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000550887	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000550887	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000358326	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
Frame-shit	ENST00000358326	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
5CDS-intron	ENST00000358326	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
intron-3CDS	ENST00000548369	ENST00000355496		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
intron-3CDS	ENST00000548369	ENST00000263265		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
intron-intron	ENST00000548369	ENST00000596713		TCGA	LD	OV	TCGA-04-1347-01A	STXBP6	chr14	25325142	-	PLEKHA4	chr19	49341386	-
In-frame	ENST00000358465	ENST00000370225		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
Frame-shit	ENST00000358465	ENST00000535881		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
Frame-shit	ENST00000358465	ENST00000536513		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
5CDS-intron	ENST00000358465	ENST00000465352		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
5CDS-intron	ENST00000358465	ENST00000535735		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
In-frame	ENST00000369543	ENST00000370225		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
Frame-shit	ENST00000369543	ENST00000535881		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
Frame-shit	ENST00000369543	ENST00000536513		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
5CDS-intron	ENST00000369543	ENST00000465352		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
5CDS-intron	ENST00000369543	ENST00000535735		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-3CDS	ENST00000450349	ENST00000370225		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-3CDS	ENST00000450349	ENST00000535881		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-3CDS	ENST00000450349	ENST00000536513		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-intron	ENST00000450349	ENST00000465352		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-intron	ENST00000450349	ENST00000535735		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-3CDS	ENST00000476908	ENST00000370225		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-3CDS	ENST00000476908	ENST00000535881		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-3CDS	ENST00000476908	ENST00000536513		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-intron	ENST00000476908	ENST00000465352		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
intron-intron	ENST00000476908	ENST00000535735		TCGA	LD	OV	TCGA-04-1347-01A	TRIM33	chr1	115053172	-	ABCA4	chr1	94458798	-
In-frame	ENST00000535622	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000535622	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000535622	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400246	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000400246	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000266091	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000266091	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382105	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000382105	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400249	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000400249	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382112	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000382112	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000382111	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000382111	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400248	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000400248	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000494060	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-intron	ENST00000494060	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000536766	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000536766	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
In-frame	ENST00000400242	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
5CDS-intron	ENST00000400242	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000403222		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000407373		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000332585		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000382310		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000446658		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000401475		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000437268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000539165	ENST00000535268		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-intron	ENST00000539165	ENST00000496575		TCGA	LD	OV	TCGA-04-1348-01A	DEPDC5	chr22	32164849	+	OSBP2	chr22	31301824	+
intron-3CDS	ENST00000535798	ENST00000157600		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-3CDS	ENST00000535798	ENST00000535732		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-intron	ENST00000535798	ENST00000454244		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-5UTR	ENST00000535798	ENST00000397386		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-3CDS	ENST00000404922	ENST00000157600		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-3CDS	ENST00000404922	ENST00000535732		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-intron	ENST00000404922	ENST00000454244		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-5UTR	ENST00000404922	ENST00000397386		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-3CDS	ENST00000295760	ENST00000157600		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-3CDS	ENST00000295760	ENST00000535732		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-intron	ENST00000295760	ENST00000454244		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
5UTR-5UTR	ENST00000295760	ENST00000397386		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-3CDS	ENST00000492059	ENST00000157600		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-3CDS	ENST00000492059	ENST00000535732		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-intron	ENST00000492059	ENST00000454244		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
intron-5UTR	ENST00000492059	ENST00000397386		TCGA	LD	OV	TCGA-04-1348-01A	FBLN2	chr3	13590708	+	LMCD1	chr3	8574423	+
In-frame	ENST00000558518	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-5UTR	ENST00000558518	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
In-frame	ENST00000557933	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-5UTR	ENST00000557933	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
In-frame	ENST00000455727	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-5UTR	ENST00000455727	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
In-frame	ENST00000535915	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-5UTR	ENST00000535915	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
In-frame	ENST00000545707	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-5UTR	ENST00000545707	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
In-frame	ENST00000558013	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-5UTR	ENST00000558013	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
intron-3CDS	ENST00000560628	ENST00000500728		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
intron-5UTR	ENST00000560628	ENST00000296325		TCGA	LD	OV	TCGA-04-1348-01A	LDLR	chr19	11200291	+	LRPAP1	chr4	3514763	-
5CDS-intron	ENST00000263409	ENST00000337702		TCGA	LD	OV	TCGA-04-1348-01A	LIFR	chr5	38523521	-	TTC33	chr5	40613483	-
5CDS-intron	ENST00000263409	ENST00000503936		TCGA	LD	OV	TCGA-04-1348-01A	LIFR	chr5	38523521	-	TTC33	chr5	40613483	-
5CDS-intron	ENST00000453190	ENST00000337702		TCGA	LD	OV	TCGA-04-1348-01A	LIFR	chr5	38523521	-	TTC33	chr5	40613483	-
5CDS-intron	ENST00000453190	ENST00000503936		TCGA	LD	OV	TCGA-04-1348-01A	LIFR	chr5	38523521	-	TTC33	chr5	40613483	-
5UTR-intron	ENST00000503088	ENST00000337702		TCGA	LD	OV	TCGA-04-1348-01A	LIFR	chr5	38523521	-	TTC33	chr5	40613483	-
5UTR-intron	ENST00000503088	ENST00000503936		TCGA	LD	OV	TCGA-04-1348-01A	LIFR	chr5	38523521	-	TTC33	chr5	40613483	-
Frame-shit	ENST00000328024	ENST00000506763		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
Frame-shit	ENST00000328024	ENST00000243706		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
Frame-shit	ENST00000328024	ENST00000443786		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
Frame-shit	ENST00000601897	ENST00000506763		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
Frame-shit	ENST00000601897	ENST00000243706		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
Frame-shit	ENST00000601897	ENST00000443786		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
In-frame	ENST00000594216	ENST00000506763		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
In-frame	ENST00000594216	ENST00000243706		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
In-frame	ENST00000594216	ENST00000443786		TCGA	LD	OV	TCGA-04-1348-01A	RAB11B	chr19	8467449	+	HAUS3	chr4	2240770	-
5CDS-intron	ENST00000477973	ENST00000535334		TCGA	LD	OV	TCGA-04-1348-01A	RYBP	chr3	72495647	-	ARL13B	chr3	93714718	+
5CDS-intron	ENST00000477973	ENST00000303097		TCGA	LD	OV	TCGA-04-1348-01A	RYBP	chr3	72495647	-	ARL13B	chr3	93714718	+
5CDS-intron	ENST00000477973	ENST00000394222		TCGA	LD	OV	TCGA-04-1348-01A	RYBP	chr3	72495647	-	ARL13B	chr3	93714718	+
5CDS-5UTR	ENST00000477973	ENST00000539730		TCGA	LD	OV	TCGA-04-1348-01A	RYBP	chr3	72495647	-	ARL13B	chr3	93714718	+
5CDS-5UTR	ENST00000477973	ENST00000471138		TCGA	LD	OV	TCGA-04-1348-01A	RYBP	chr3	72495647	-	ARL13B	chr3	93714718	+
5CDS-3UTR	ENST00000477973	ENST00000486562		TCGA	LD	OV	TCGA-04-1348-01A	RYBP	chr3	72495647	-	ARL13B	chr3	93714718	+
In-frame	ENST00000403299	ENST00000407936		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000403299	ENST00000405557		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000403299	ENST00000442738		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000403299	ENST00000460648		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000403299	ENST00000488684		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000403299	ENST00000606538		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000403299	ENST00000470701		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-3UTR	ENST00000403299	ENST00000608713		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-3CDS	ENST00000406271	ENST00000407936		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000406271	ENST00000405557		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000406271	ENST00000442738		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000406271	ENST00000460648		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000406271	ENST00000488684		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000406271	ENST00000606538		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000406271	ENST00000470701		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-3UTR	ENST00000406271	ENST00000608713		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
Frame-shit	ENST00000251973	ENST00000407936		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000251973	ENST00000405557		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000251973	ENST00000442738		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000251973	ENST00000460648		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000251973	ENST00000488684		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000251973	ENST00000606538		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-intron	ENST00000251973	ENST00000470701		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
5CDS-3UTR	ENST00000251973	ENST00000608713		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-3CDS	ENST00000494166	ENST00000407936		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000494166	ENST00000405557		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000494166	ENST00000442738		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000494166	ENST00000460648		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000494166	ENST00000488684		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000494166	ENST00000606538		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-intron	ENST00000494166	ENST00000470701		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
intron-3UTR	ENST00000494166	ENST00000608713		TCGA	LD	OV	TCGA-04-1356-01A	CARD10	chr22	37911980	-	POLR2F	chr22	38437075	+
In-frame	ENST00000341500	ENST00000374436		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
5CDS-intron	ENST00000341500	ENST00000374443		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
5CDS-intron	ENST00000341500	ENST00000374450		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
5CDS-intron	ENST00000341500	ENST00000462894		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
In-frame	ENST00000302850	ENST00000374436		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
5CDS-intron	ENST00000302850	ENST00000374443		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
5CDS-intron	ENST00000302850	ENST00000374450		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
5CDS-intron	ENST00000302850	ENST00000462894		TCGA	LD	OV	TCGA-04-1356-01A	INSR	chr19	7267356	-	EIF6	chr20	33868632	-
Frame-shit	ENST00000405486	ENST00000263256		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000405486	ENST00000463886		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000356244	ENST00000263256		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000356244	ENST00000463886		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000455915	ENST00000263256		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
5CDS-intron	ENST00000455915	ENST00000463886		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
intron-3CDS	ENST00000407260	ENST00000263256		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
intron-intron	ENST00000407260	ENST00000463886		TCGA	LD	OV	TCGA-04-1356-01A	RANGAP1	chr22	41676937	-	DESI1	chr22	42003865	-
Frame-shit	ENST00000373242	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000373238	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
In-frame	ENST00000373241	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
In-frame	ENST00000431664	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000458634	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
In-frame	ENST00000373236	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
intron-3CDS	ENST00000477464	ENST00000287139		TCGA	LD	OV	TCGA-04-1356-01A	SAR1A	chr10	71920760	-	NODAL	chr10	72195739	-
In-frame	ENST00000535157	ENST00000341547		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000535157	ENST00000357063		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000535157	ENST00000377534		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000535157	ENST00000321797		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000535157	ENST00000526202		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000535157	ENST00000465261		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
5CDS-intron	ENST00000535157	ENST00000605961		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000377246	ENST00000341547		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000377246	ENST00000357063		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000377246	ENST00000377534		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000377246	ENST00000321797		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000377246	ENST00000526202		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000377246	ENST00000465261		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
5CDS-intron	ENST00000377246	ENST00000605961		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000349847	ENST00000341547		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000349847	ENST00000357063		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000349847	ENST00000377534		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000349847	ENST00000321797		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000349847	ENST00000526202		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
In-frame	ENST00000349847	ENST00000465261		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
5CDS-intron	ENST00000349847	ENST00000605961		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-3CDS	ENST00000469982	ENST00000341547		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-3CDS	ENST00000469982	ENST00000357063		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-3CDS	ENST00000469982	ENST00000377534		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-3CDS	ENST00000469982	ENST00000321797		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-3CDS	ENST00000469982	ENST00000526202		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-3CDS	ENST00000469982	ENST00000465261		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
intron-intron	ENST00000469982	ENST00000605961		TCGA	LD	OV	TCGA-04-1356-01A	SCEL	chr13	78130848	+	LMO7	chr13	76427228	+
Frame-shit	ENST00000367463	ENST00000341911		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
In-frame	ENST00000367463	ENST00000316528		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
In-frame	ENST00000367463	ENST00000442647		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
Frame-shit	ENST00000367463	ENST00000367814		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
Frame-shit	ENST00000367463	ENST00000525369		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
In-frame	ENST00000367463	ENST00000534121		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
In-frame	ENST00000367463	ENST00000533624		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
In-frame	ENST00000367463	ENST00000534044		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
In-frame	ENST00000367463	ENST00000528774		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
5CDS-3UTR	ENST00000367463	ENST00000531845		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
5CDS-intron	ENST00000367463	ENST00000527615		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
5CDS-intron	ENST00000367463	ENST00000420123		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000341911		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000316528		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000442647		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000367814		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000525369		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000534121		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000533624		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000534044		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3CDS	ENST00000466695	ENST00000528774		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-3UTR	ENST00000466695	ENST00000531845		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-intron	ENST00000466695	ENST00000527615		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
intron-intron	ENST00000466695	ENST00000420123		TCGA	LD	OV	TCGA-04-1356-01A	UST	chr6	149208165	+	MYB	chr6	135539002	+
5CDS-3UTR	ENST00000344749	ENST00000170168		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-intron	ENST00000344749	ENST00000587524		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-3UTR	ENST00000262965	ENST00000170168		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-intron	ENST00000262965	ENST00000587524		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-3UTR	ENST00000453954	ENST00000170168		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-intron	ENST00000453954	ENST00000587524		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-3UTR	ENST00000395423	ENST00000170168		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-intron	ENST00000395423	ENST00000587524		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-3UTR	ENST00000588136	ENST00000170168		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
5CDS-intron	ENST00000588136	ENST00000587524		TCGA	LD	OV	TCGA-04-1357-01A	TCF3	chr19	1619110	-	REXO1	chr19	1815485	-
Frame-shit	ENST00000341426	ENST00000423230		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341426	ENST00000398656		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341426	ENST00000534366		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341426	ENST00000528919		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341426	ENST00000326134		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000341426	ENST00000527071		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000341426	ENST00000544576		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341991	ENST00000423230		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341991	ENST00000398656		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341991	ENST00000534366		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341991	ENST00000528919		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000341991	ENST00000326134		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000341991	ENST00000527071		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000341991	ENST00000544576		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
In-frame	ENST00000378625	ENST00000423230		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
In-frame	ENST00000378625	ENST00000398656		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
In-frame	ENST00000378625	ENST00000534366		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
In-frame	ENST00000378625	ENST00000528919		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
In-frame	ENST00000378625	ENST00000326134		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000378625	ENST00000527071		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000378625	ENST00000544576		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000344463	ENST00000423230		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000344463	ENST00000398656		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000344463	ENST00000534366		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000344463	ENST00000528919		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
Frame-shit	ENST00000344463	ENST00000326134		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000344463	ENST00000527071		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5CDS-intron	ENST00000344463	ENST00000544576		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-3CDS	ENST00000492768	ENST00000423230		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-3CDS	ENST00000492768	ENST00000398656		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-3CDS	ENST00000492768	ENST00000534366		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-3CDS	ENST00000492768	ENST00000528919		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-3CDS	ENST00000492768	ENST00000326134		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-intron	ENST00000492768	ENST00000527071		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
5UTR-intron	ENST00000492768	ENST00000544576		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-3CDS	ENST00000342348	ENST00000423230		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-3CDS	ENST00000342348	ENST00000398656		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-3CDS	ENST00000342348	ENST00000534366		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-3CDS	ENST00000342348	ENST00000528919		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-3CDS	ENST00000342348	ENST00000326134		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-intron	ENST00000342348	ENST00000527071		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-intron	ENST00000342348	ENST00000544576		TCGA	LD	OV	TCGA-04-1361-01A	NADK	chr1	1696667	-	MROH1	chr8	145245687	+
intron-3CDS	ENST00000475441	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000475441	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000475441	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000475441	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-intron	ENST00000475441	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000531126	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000531126	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000531126	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000531126	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-intron	ENST00000531126	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000488745	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000488745	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000488745	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000488745	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-intron	ENST00000488745	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000483436	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000483436	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000483436	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-3CDS	ENST00000483436	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
5UTR-intron	ENST00000483436	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384581	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384581	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384581	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384581	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-intron	ENST00000384581	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384584	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384584	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384584	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384584	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-intron	ENST00000384584	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384342	ENST00000423620		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384342	ENST00000433389		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384342	ENST00000358397		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000384342	ENST00000454170		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-intron	ENST00000384342	ENST00000523347		TCGA	LD	OV	TCGA-04-1361-01A	SNHG12	chr1	28908102	-	ESRP1	chr8	95690431	+
intron-3CDS	ENST00000535628	ENST00000401642		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000535628	ENST00000388940		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000588982	ENST00000401642		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000588982	ENST00000388940		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000586438	ENST00000401642		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000586438	ENST00000388940		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
5UTR-3CDS	ENST00000590800	ENST00000401642		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
5UTR-3CDS	ENST00000590800	ENST00000388940		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000332053	ENST00000401642		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
intron-3CDS	ENST00000332053	ENST00000388940		TCGA	LD	OV	TCGA-04-1361-01A	ZBTB7C	chr18	45712305	-	SCFD2	chr4	54140168	-
Frame-shit	ENST00000405201	ENST00000279101		TCGA	LD	OV	TCGA-04-1362-01A	NCOR2	chr12	124838639	-	CABLES2	chr20	60971648	-
Frame-shit	ENST00000404621	ENST00000279101		TCGA	LD	OV	TCGA-04-1362-01A	NCOR2	chr12	124838639	-	CABLES2	chr20	60971648	-
Frame-shit	ENST00000404121	ENST00000279101		TCGA	LD	OV	TCGA-04-1362-01A	NCOR2	chr12	124838639	-	CABLES2	chr20	60971648	-
Frame-shit	ENST00000356219	ENST00000279101		TCGA	LD	OV	TCGA-04-1362-01A	NCOR2	chr12	124838639	-	CABLES2	chr20	60971648	-
Frame-shit	ENST00000397355	ENST00000279101		TCGA	LD	OV	TCGA-04-1362-01A	NCOR2	chr12	124838639	-	CABLES2	chr20	60971648	-
Frame-shit	ENST00000429285	ENST00000279101		TCGA	LD	OV	TCGA-04-1362-01A	NCOR2	chr12	124838639	-	CABLES2	chr20	60971648	-
In-frame	ENST00000394836	ENST00000519301		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000520407		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000523079		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000338921		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000356819		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000287845		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000341377		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000287842		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000521670		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000405005		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000520502		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000394836	ENST00000539990		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000394836	ENST00000523681		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000519301		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000520407		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000523079		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000338921		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000356819		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000287845		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000341377		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000287842		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000521670		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000405005		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000520502		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
In-frame	ENST00000301773	ENST00000539990		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
5CDS-intron	ENST00000301773	ENST00000523681		TCGA	LD	OV	TCGA-04-1362-01A	RAB3IL1	chr11	61666786	-	NRG1	chr8	32585467	+
intron-3CDS	ENST00000449098	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000449098	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000320084	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000320084	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000336053	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000336053	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000554969	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000554969	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000556142	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000556142	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000554455	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000554455	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5UTR-3CDS	ENST00000430246	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5UTR-3CDS	ENST00000430246	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000553753	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000553753	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000555914	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000555914	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000555309	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000555309	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000556628	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000556628	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000555883	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000555883	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000556513	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000556513	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000557201	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000557201	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000553300	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
intron-3CDS	ENST00000553300	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5UTR-3CDS	ENST00000556897	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5UTR-3CDS	ENST00000556897	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5UTR-3CDS	ENST00000420743	ENST00000283109		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5UTR-3CDS	ENST00000420743	ENST00000508447		TCGA	LD	OV	TCGA-04-1364-01A	HNRNPC	chr14	21730760	-	RIOK2	chr5	96513552	-
5CDS-intron	ENST00000374459	ENST00000446372		TCGA	LD	OV	TCGA-04-1364-01A	RASGEF1A	chr10	43694381	-	SFTA1P	chr10	10828718	-
5CDS-intron	ENST00000395810	ENST00000446372		TCGA	LD	OV	TCGA-04-1364-01A	RASGEF1A	chr10	43694381	-	SFTA1P	chr10	10828718	-
5CDS-intron	ENST00000395809	ENST00000446372		TCGA	LD	OV	TCGA-04-1364-01A	RASGEF1A	chr10	43694381	-	SFTA1P	chr10	10828718	-
intron-intron	ENST00000472864	ENST00000446372		TCGA	LD	OV	TCGA-04-1364-01A	RASGEF1A	chr10	43694381	-	SFTA1P	chr10	10828718	-
In-frame	ENST00000318596	ENST00000252577		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
In-frame	ENST00000318596	ENST00000360315		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
Frame-shit	ENST00000318596	ENST00000537887		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
Frame-shit	ENST00000318596	ENST00000404158		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
Frame-shit	ENST00000318596	ENST00000358713		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
Frame-shit	ENST00000318596	ENST00000429563		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
5CDS-intron	ENST00000318596	ENST00000473184		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-3CDS	ENST00000600275	ENST00000252577		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-3CDS	ENST00000600275	ENST00000360315		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-3CDS	ENST00000600275	ENST00000537887		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-3CDS	ENST00000600275	ENST00000404158		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-3CDS	ENST00000600275	ENST00000358713		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-3CDS	ENST00000600275	ENST00000429563		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
3UTR-intron	ENST00000600275	ENST00000473184		TCGA	LD	OV	TCGA-04-1364-01A	SLC25A42	chr19	19217194	+	GATAD2A	chr19	19616153	+
intron-3CDS	ENST00000519846	ENST00000262646		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000519846	ENST00000531289		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000519846	ENST00000529579		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000519846	ENST00000530071		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000518592	ENST00000262646		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000518592	ENST00000531289		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000518592	ENST00000529579		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000518592	ENST00000530071		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000325897	ENST00000262646		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000325897	ENST00000531289		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000325897	ENST00000529579		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000325897	ENST00000530071		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000518858	ENST00000262646		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000518858	ENST00000531289		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3CDS	ENST00000518858	ENST00000529579		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
intron-3UTR	ENST00000518858	ENST00000530071		TCGA	LD	OV	TCGA-04-1365-01A	CLVS1	chr8	61969789	+	RAB2A	chr8	61531139	+
Frame-shit	ENST00000354185	ENST00000298596		TCGA	LD	OV	TCGA-04-1365-01A	DDX21	chr10	70716068	+	STOX1	chr10	70641714	+
Frame-shit	ENST00000354185	ENST00000399169		TCGA	LD	OV	TCGA-04-1365-01A	DDX21	chr10	70716068	+	STOX1	chr10	70641714	+
Frame-shit	ENST00000354185	ENST00000399165		TCGA	LD	OV	TCGA-04-1365-01A	DDX21	chr10	70716068	+	STOX1	chr10	70641714	+
Frame-shit	ENST00000354185	ENST00000399162		TCGA	LD	OV	TCGA-04-1365-01A	DDX21	chr10	70716068	+	STOX1	chr10	70641714	+
5CDS-5UTR	ENST00000354185	ENST00000421961		TCGA	LD	OV	TCGA-04-1365-01A	DDX21	chr10	70716068	+	STOX1	chr10	70641714	+
5CDS-5UTR	ENST00000262811	ENST00000355502		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000594617		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000447275		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000262805		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000594465		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000539010		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000598111		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000262811	ENST00000597297		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-5UTR	ENST00000262811	ENST00000596647		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-5UTR	ENST00000608648	ENST00000355502		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000594617		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000447275		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000262805		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000594465		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000539010		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000598111		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-intron	ENST00000608648	ENST00000597297		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
intron-5UTR	ENST00000608648	ENST00000596647		TCGA	LD	OV	TCGA-04-1365-01A	MAST3	chr19	18252825	+	PDE4C	chr19	18362971	-
5CDS-intron	ENST00000521654	ENST00000368416		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000368417		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000546092		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000545433		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000521654	ENST00000476571		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000368416		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000368417		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000546092		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000545433		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000560949	ENST00000476571		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000368416		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000368417		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000546092		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000545433		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000454842	ENST00000476571		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000368414	ENST00000368416		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000368414	ENST00000368417		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000368414	ENST00000546092		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000368414	ENST00000545433		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5UTR-intron	ENST00000368414	ENST00000476571		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359704	ENST00000368416		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359704	ENST00000368417		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359704	ENST00000546092		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359704	ENST00000545433		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000359704	ENST00000476571		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000368416		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000368417		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000546092		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000545433		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000275184	ENST00000476571		TCGA	LD	OV	TCGA-04-1365-01A	RNF217	chr6	125366590	+	NKAIN2	chr6	125112485	+
intron-3CDS	ENST00000588267	ENST00000340748		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000588267	ENST00000540357		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000588267	ENST00000359526		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-intron	ENST00000588267	ENST00000589538		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000592859	ENST00000340748		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000592859	ENST00000540357		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000592859	ENST00000359526		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-intron	ENST00000592859	ENST00000589538		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000586293	ENST00000340748		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000586293	ENST00000540357		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000586293	ENST00000359526		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-intron	ENST00000586293	ENST00000589538		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000397902	ENST00000340748		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000397902	ENST00000540357		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000397902	ENST00000359526		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-intron	ENST00000397902	ENST00000589538		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000589038	ENST00000340748		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000589038	ENST00000540357		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000589038	ENST00000359526		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
intron-intron	ENST00000589038	ENST00000589538		TCGA	LD	OV	TCGA-04-1365-01A	ZNF846	chr19	9896614	-	DNMT1	chr19	10277361	-
In-frame	ENST00000527524	ENST00000436639		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
5CDS-5UTR	ENST00000527524	ENST00000302071		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
5CDS-5UTR	ENST00000527524	ENST00000356644		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
5CDS-intron	ENST00000527524	ENST00000517548		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
In-frame	ENST00000438375	ENST00000436639		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
5CDS-5UTR	ENST00000438375	ENST00000302071		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
5CDS-5UTR	ENST00000438375	ENST00000356644		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
5CDS-intron	ENST00000438375	ENST00000517548		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
intron-3CDS	ENST00000527130	ENST00000436639		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
intron-5UTR	ENST00000527130	ENST00000302071		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
intron-5UTR	ENST00000527130	ENST00000356644		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
intron-intron	ENST00000527130	ENST00000517548		TCGA	LD	OV	TCGA-04-1514-01A	GRIK4	chr11	120745952	+	SESN1	chr6	109323546	-
Frame-shit	ENST00000225298	ENST00000559488		TCGA	LD	OV	TCGA-04-1514-01A	UTP18	chr17	49338287	+	ITGB3	chr17	45351785	+
Frame-shit	ENST00000225298	ENST00000571680		TCGA	LD	OV	TCGA-04-1514-01A	UTP18	chr17	49338287	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000225298	ENST00000435993		TCGA	LD	OV	TCGA-04-1514-01A	UTP18	chr17	49338287	+	ITGB3	chr17	45351785	+
5CDS-5UTR	ENST00000225298	ENST00000560629		TCGA	LD	OV	TCGA-04-1514-01A	UTP18	chr17	49338287	+	ITGB3	chr17	45351785	+
In-frame	ENST00000368315	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000368315	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000368315	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000368315	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000368315	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313695	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313695	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313695	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313695	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000313695	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000361247	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000361247	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000361247	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000361247	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000361247	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000368316	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000368316	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000368316	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000368316	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000368316	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000462460	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000462460	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000462460	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
Frame-shit	ENST00000462460	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000462460	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000477754	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000477754	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000477754	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
intron-3CDS	ENST00000477754	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
intron-5UTR	ENST00000477754	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313667	ENST00000437809		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313667	ENST00000368331		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313667	ENST00000271883		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
In-frame	ENST00000313667	ENST00000361040		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000313667	ENST00000471341		TCGA	LD	OV	TCGA-04-1517-01A	ARHGEF2	chr1	155924693	-	GON4L	chr1	155755165	-
5CDS-5UTR	ENST00000540306	ENST00000320033		TCGA	LD	OV	TCGA-04-1517-01A	DHX8	chr17	41577471	+	ARL4D	chr17	41477029	+
5CDS-5UTR	ENST00000262415	ENST00000320033		TCGA	LD	OV	TCGA-04-1517-01A	DHX8	chr17	41577471	+	ARL4D	chr17	41477029	+
5CDS-5UTR	ENST00000392562	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
5CDS-5UTR	ENST00000316804	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
5CDS-5UTR	ENST00000316615	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
5CDS-5UTR	ENST00000392563	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
5CDS-5UTR	ENST00000392564	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
5CDS-5UTR	ENST00000578961	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
intron-5UTR	ENST00000462266	ENST00000348956		TCGA	LD	OV	TCGA-04-1517-01A	GRB2	chr17	73389632	-	CKB	chr14	103988842	-
5CDS-3UTR	ENST00000374040	ENST00000247087		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-3UTR	ENST00000374040	ENST00000374011		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-intron	ENST00000374040	ENST00000480033		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-3UTR	ENST00000493901	ENST00000247087		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-3UTR	ENST00000493901	ENST00000374011		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-intron	ENST00000493901	ENST00000480033		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-3UTR	ENST00000357582	ENST00000247087		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-3UTR	ENST00000357582	ENST00000374011		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
5CDS-intron	ENST00000357582	ENST00000480033		TCGA	LD	OV	TCGA-04-1517-01A	MAP3K6	chr1	27690408	-	AHDC1	chr1	27861427	-
In-frame	ENST00000375749	ENST00000534862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375749	ENST00000538448		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375749	ENST00000375862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375749	ENST00000520553		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375749	ENST00000518730		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375749	ENST00000375852		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375730	ENST00000534862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375730	ENST00000538448		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375730	ENST00000375862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375730	ENST00000520553		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375730	ENST00000518730		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
In-frame	ENST00000375730	ENST00000375852		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
5UTR-3CDS	ENST00000539210	ENST00000534862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
5UTR-3CDS	ENST00000539210	ENST00000538448		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
5UTR-3CDS	ENST00000539210	ENST00000375862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
5UTR-3CDS	ENST00000539210	ENST00000520553		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
5UTR-3CDS	ENST00000539210	ENST00000518730		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
5UTR-3CDS	ENST00000539210	ENST00000375852		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
3UTR-3CDS	ENST00000486717	ENST00000534862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
3UTR-3CDS	ENST00000486717	ENST00000538448		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
3UTR-3CDS	ENST00000486717	ENST00000375862		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
3UTR-3CDS	ENST00000486717	ENST00000520553		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
3UTR-3CDS	ENST00000486717	ENST00000518730		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
3UTR-3CDS	ENST00000486717	ENST00000375852		TCGA	LD	OV	TCGA-04-1517-01A	POFUT1	chr20	30795868	+	HCK	chr20	30671697	+
Frame-shit	ENST00000535977	ENST00000487861		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000535977	ENST00000471583		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000535977	ENST00000487270		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000535977	ENST00000488612		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000535977	ENST00000390683		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000535977	ENST00000469165		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000539661	ENST00000487861		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000539661	ENST00000471583		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000539661	ENST00000487270		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000539661	ENST00000488612		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000539661	ENST00000390683		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000539661	ENST00000469165		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000538492	ENST00000487861		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000538492	ENST00000471583		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000538492	ENST00000487270		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000538492	ENST00000488612		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000538492	ENST00000390683		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000538492	ENST00000469165		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000248139	ENST00000487861		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000248139	ENST00000471583		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000248139	ENST00000487270		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000248139	ENST00000488612		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000248139	ENST00000390683		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000248139	ENST00000469165		TCGA	LD	OV	TCGA-04-1517-01A	RAB40C	chr16	640433	+	RAD51B	chr14	68758601	+
5CDS-5UTR	ENST00000360168	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000360168	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000360168	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000358945	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000358945	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000358945	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000540037	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000540037	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
intron-intron	ENST00000540037	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000228916	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000228916	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000228916	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000396966	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000396966	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000396966	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000543768	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000543768	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000543768	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000538979	ENST00000291547		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000538979	ENST00000432907		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
intron-intron	ENST00000538979	ENST00000607150		TCGA	LD	OV	TCGA-04-1517-01A	SCNN1A	chr12	6483534	-	PKNOX1	chr21	44424436	+
5UTR-3UTR	ENST00000354618	ENST00000585748		TCGA	LD	OV	TCGA-04-1517-01A	THRAP3	chr1	36690106	+	STK11	chr19	1218416	+
5UTR-3UTR	ENST00000354618	ENST00000326873		TCGA	LD	OV	TCGA-04-1517-01A	THRAP3	chr1	36690106	+	STK11	chr19	1218416	+
5UTR-3UTR	ENST00000469141	ENST00000585748		TCGA	LD	OV	TCGA-04-1517-01A	THRAP3	chr1	36690106	+	STK11	chr19	1218416	+
5UTR-3UTR	ENST00000469141	ENST00000326873		TCGA	LD	OV	TCGA-04-1517-01A	THRAP3	chr1	36690106	+	STK11	chr19	1218416	+
intron-3UTR	ENST00000466743	ENST00000585748		TCGA	LD	OV	TCGA-04-1517-01A	THRAP3	chr1	36690106	+	STK11	chr19	1218416	+
intron-3UTR	ENST00000466743	ENST00000326873		TCGA	LD	OV	TCGA-04-1517-01A	THRAP3	chr1	36690106	+	STK11	chr19	1218416	+
5CDS-intron	ENST00000288912	ENST00000540235		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000288912	ENST00000393930		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000288912	ENST00000393931		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000288912	ENST00000310706		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000397454	ENST00000540235		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000397454	ENST00000393930		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000397454	ENST00000393931		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
5CDS-intron	ENST00000397454	ENST00000310706		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
3UTR-intron	ENST00000545752	ENST00000540235		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
3UTR-intron	ENST00000545752	ENST00000393930		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
3UTR-intron	ENST00000545752	ENST00000393931		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
3UTR-intron	ENST00000545752	ENST00000310706		TCGA	LD	OV	TCGA-04-1517-01A	WDR66	chr12	122400068	+	JUP	chr17	39912466	-
Frame-shit	ENST00000254322	ENST00000455140		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
In-frame	ENST00000254322	ENST00000248070		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
In-frame	ENST00000254322	ENST00000535753		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
Frame-shit	ENST00000254322	ENST00000594975		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
5CDS-intron	ENST00000254322	ENST00000602009		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
5CDS-intron	ENST00000254322	ENST00000597937		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
intron-3CDS	ENST00000396969	ENST00000455140		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
intron-3CDS	ENST00000396969	ENST00000248070		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
intron-3CDS	ENST00000396969	ENST00000535753		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
intron-3CDS	ENST00000396969	ENST00000594975		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
intron-intron	ENST00000396969	ENST00000602009		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
intron-intron	ENST00000396969	ENST00000597937		TCGA	LD	OV	TCGA-04-1519-01A	DNAJB1	chr19	14628951	-	EPS15L1	chr19	16472795	-
5UTR-3CDS	ENST00000278550	ENST00000374142		TCGA	LD	OV	TCGA-04-1530-01A	TENM4	chr11	79151553	-	ZDHHC18	chr1	27158938	+
5UTR-intron	ENST00000278550	ENST00000478902		TCGA	LD	OV	TCGA-04-1530-01A	TENM4	chr11	79151553	-	ZDHHC18	chr1	27158938	+
intron-3CDS	ENST00000533038	ENST00000374142		TCGA	LD	OV	TCGA-04-1530-01A	TENM4	chr11	79151553	-	ZDHHC18	chr1	27158938	+
intron-intron	ENST00000533038	ENST00000478902		TCGA	LD	OV	TCGA-04-1530-01A	TENM4	chr11	79151553	-	ZDHHC18	chr1	27158938	+
In-frame	ENST00000439986	ENST00000336915		TCGA	LD	OV	TCGA-04-1648-01A	CCBE1	chr18	57363861	-	SKAP1	chr17	46441176	-
In-frame	ENST00000439986	ENST00000584924		TCGA	LD	OV	TCGA-04-1648-01A	CCBE1	chr18	57363861	-	SKAP1	chr17	46441176	-
intron-3CDS	ENST00000398179	ENST00000336915		TCGA	LD	OV	TCGA-04-1648-01A	CCBE1	chr18	57363861	-	SKAP1	chr17	46441176	-
intron-3CDS	ENST00000398179	ENST00000584924		TCGA	LD	OV	TCGA-04-1648-01A	CCBE1	chr18	57363861	-	SKAP1	chr17	46441176	-
5UTR-3CDS	ENST00000383440	ENST00000581852		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000403303		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000383096		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000300227		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000579916		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000406524		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000583930		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000402325		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000383440	ENST00000579947		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-intron	ENST00000383440	ENST00000583550		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000581852		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000403303		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000383096		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000300227		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000579916		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000406524		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000583930		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000402325		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-3CDS	ENST00000262126	ENST00000579947		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
5UTR-intron	ENST00000262126	ENST00000583550		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000581852		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000403303		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000383096		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000300227		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000579916		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000406524		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000583930		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000402325		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-3CDS	ENST00000540578	ENST00000579947		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
3UTR-intron	ENST00000540578	ENST00000583550		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000581852		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000403303		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000383096		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000300227		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000579916		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000406524		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000583930		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000402325		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000400020	ENST00000579947		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
intron-intron	ENST00000400020	ENST00000583550		TCGA	LD	OV	TCGA-04-1651-01A	ANKRD12	chr18	9136963	+	CCDC178	chr18	30554645	-
Frame-shit	ENST00000295874	ENST00000254900		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000295874	ENST00000230901		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000295874	ENST00000402931		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000295874	ENST00000411594		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000295874	ENST00000455658		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000295874	ENST00000515014		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
Frame-shit	ENST00000474889	ENST00000254900		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000474889	ENST00000230901		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000474889	ENST00000402931		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000474889	ENST00000411594		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000474889	ENST00000455658		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
5CDS-intron	ENST00000474889	ENST00000515014		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
3UTR-3CDS	ENST00000495879	ENST00000254900		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
3UTR-intron	ENST00000495879	ENST00000230901		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
3UTR-intron	ENST00000495879	ENST00000402931		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
3UTR-intron	ENST00000495879	ENST00000411594		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
3UTR-intron	ENST00000495879	ENST00000455658		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
3UTR-intron	ENST00000495879	ENST00000515014		TCGA	LD	OV	TCGA-04-1651-01A	PTPRG	chr3	61734656	+	BRD8	chr5	137481567	-
Frame-shit	ENST00000337231	ENST00000425042		TCGA	LD	OV	TCGA-09-0364-01A	CDR2L	chr17	72984217	+	HID1	chr17	72960727	-
5CDS-5UTR	ENST00000337231	ENST00000532900		TCGA	LD	OV	TCGA-09-0364-01A	CDR2L	chr17	72984217	+	HID1	chr17	72960727	-
Frame-shit	ENST00000375608	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
5CDS-3UTR	ENST00000375608	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
Frame-shit	ENST00000442652	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
5CDS-3UTR	ENST00000442652	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000375604	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000375604	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000397030	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000397030	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000535094	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000535094	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000421756	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000421756	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000375601	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000375601	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
Frame-shit	ENST00000397036	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
5CDS-3UTR	ENST00000397036	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000434480	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000434480	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000423482	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000423482	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000375597	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000375597	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000397024	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000397024	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000480321	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000480321	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3CDS	ENST00000397021	ENST00000335678		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
intron-3UTR	ENST00000397021	ENST00000545304		TCGA	LD	OV	TCGA-09-0364-01A	MCF2L	chr13	113556685	+	GRK1	chr13	114435857	+
5CDS-5UTR	ENST00000323670	ENST00000287275		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000323670	ENST00000532258		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000323670	ENST00000533636		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000392276	ENST00000287275		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000392276	ENST00000532258		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
intron-intron	ENST00000392276	ENST00000533636		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000592153	ENST00000287275		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000592153	ENST00000532258		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000592153	ENST00000533636		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000392275	ENST00000287275		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
intron-5UTR	ENST00000392275	ENST00000532258		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
intron-intron	ENST00000392275	ENST00000533636		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000392278	ENST00000287275		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-5UTR	ENST00000392278	ENST00000532258		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000392278	ENST00000533636		TCGA	LD	OV	TCGA-09-0366-01A	C19orf12	chr19	30199161	-	GLYATL2	chr11	58611997	-
5CDS-intron	ENST00000443236	ENST00000487416		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
5CDS-intron	ENST00000443236	ENST00000597711		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
5CDS-intron	ENST00000443236	ENST00000397349		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
5CDS-intron	ENST00000443236	ENST00000358726		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000597335	ENST00000487416		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000597335	ENST00000597711		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000597335	ENST00000397349		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000597335	ENST00000358726		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000388925	ENST00000487416		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000388925	ENST00000597711		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000388925	ENST00000397349		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-intron	ENST00000388925	ENST00000358726		TCGA	LD	OV	TCGA-09-0366-01A	CPAMD8	chr19	17100453	-	SMIM7	chr19	16741873	-
intron-5UTR	ENST00000340149	ENST00000260061		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
intron-5UTR	ENST00000340149	ENST00000407242		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
intron-5UTR	ENST00000340149	ENST00000404995		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
intron-5UTR	ENST00000340149	ENST00000464145		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5CDS-5UTR	ENST00000361507	ENST00000260061		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5CDS-5UTR	ENST00000361507	ENST00000407242		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5CDS-5UTR	ENST00000361507	ENST00000404995		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5CDS-5UTR	ENST00000361507	ENST00000464145		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5UTR-5UTR	ENST00000526030	ENST00000260061		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5UTR-5UTR	ENST00000526030	ENST00000407242		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5UTR-5UTR	ENST00000526030	ENST00000404995		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
5UTR-5UTR	ENST00000526030	ENST00000464145		TCGA	LD	OV	TCGA-09-0366-01A	GAB2	chr11	78128692	-	LRRC32	chr11	76377002	-
intron-3CDS	ENST00000540326	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000540326	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000540326	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000540326	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000373603	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000373603	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000373603	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000373603	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000373600	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000373600	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000373600	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000373600	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000320246	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000320246	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000320246	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5UTR-3CDS	ENST00000320246	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000545174	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000545174	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000545174	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000545174	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000394199	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000394199	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000394199	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000394199	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000546191	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000546191	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000546191	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000546191	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000539416	ENST00000540753		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000539416	ENST00000223423		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000539416	ENST00000362012		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
intron-3CDS	ENST00000539416	ENST00000373698		TCGA	LD	OV	TCGA-09-0366-01A	NEK6	chr9	127020364	+	PTGS1	chr9	125143650	+
5CDS-3UTR	ENST00000296657	ENST00000508179		TCGA	LD	OV	TCGA-09-0367-01A	ANKRD33B	chr5	10564945	+	SNHG18	chr5	9549102	+
In-frame	ENST00000397910	ENST00000336617		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
In-frame	ENST00000397910	ENST00000422660		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
5CDS-intron	ENST00000397910	ENST00000495244		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000380951	ENST00000336617		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000380951	ENST00000422660		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000380951	ENST00000495244		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000596956	ENST00000336617		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000596956	ENST00000422660		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000596956	ENST00000495244		TCGA	LD	OV	TCGA-09-0367-01A	MUC16	chr19	9080451	-	RNASEH2B	chr13	51501543	+
Frame-shit	ENST00000356940	ENST00000448299		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000356940	ENST00000358785		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000356940	ENST00000343381		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000356940	ENST00000366501		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000356940	ENST00000366500		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000535776	ENST00000448299		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000535776	ENST00000358785		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000535776	ENST00000343381		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000535776	ENST00000366501		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000535776	ENST00000366500		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000375802	ENST00000448299		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000375802	ENST00000358785		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000375802	ENST00000343381		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000375802	ENST00000366501		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
Frame-shit	ENST00000375802	ENST00000366500		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
3UTR-3CDS	ENST00000465772	ENST00000448299		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
3UTR-3CDS	ENST00000465772	ENST00000358785		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
3UTR-3CDS	ENST00000465772	ENST00000343381		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
3UTR-3CDS	ENST00000465772	ENST00000366501		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
3UTR-3CDS	ENST00000465772	ENST00000366500		TCGA	LD	OV	TCGA-09-0367-01A	RAB18	chr10	27793366	+	ZNF669	chr1	247265415	-
In-frame	ENST00000335099	ENST00000524630		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000335099	ENST00000529919		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000335099	ENST00000399039		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000335099	ENST00000360682		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000335099	ENST00000361796		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000335099	ENST00000361391		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000530094		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000428599		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000361332		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000527467		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000415361		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000532245		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000532463		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000528232		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000529986		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000531014		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000358694		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000526772		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000532787		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000533667		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000529873		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000525902		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000529526		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000335099	ENST00000532649		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000426142		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000532844		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000528621		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000399050		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000526357		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000530748		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000534579		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000335099	ENST00000526938		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000533205	ENST00000524630		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000533205	ENST00000529919		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000533205	ENST00000399039		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000533205	ENST00000360682		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000533205	ENST00000361796		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000533205	ENST00000361391		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000530094		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000428599		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000361332		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000527467		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000415361		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000532245		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000532463		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000528232		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000529986		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000531014		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000358694		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000526772		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000532787		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000533667		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000529873		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000525902		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000529526		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000533205	ENST00000532649		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000426142		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000532844		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000528621		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000399050		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000526357		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000530748		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000534579		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000533205	ENST00000526938		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000395120	ENST00000524630		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000395120	ENST00000529919		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000395120	ENST00000399039		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000395120	ENST00000360682		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000395120	ENST00000361796		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
In-frame	ENST00000395120	ENST00000361391		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000530094		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000428599		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000361332		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000527467		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000415361		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000532245		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000532463		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000528232		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000529986		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000531014		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000358694		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000526772		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000532787		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000533667		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000529873		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000525902		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000529526		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-intron	ENST00000395120	ENST00000532649		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000426142		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000532844		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000528621		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000399050		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000526357		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000530748		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000534579		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-5UTR	ENST00000395120	ENST00000526938		TCGA	LD	OV	TCGA-09-0367-01A	RTN4RL2	chr11	57235563	+	CTNND1	chr11	57561482	+
5CDS-3UTR	ENST00000542569	ENST00000593699		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000542569	ENST00000372499		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000542569	ENST00000496424		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372687	ENST00000593699		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372687	ENST00000372499		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372687	ENST00000496424		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372690	ENST00000593699		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372690	ENST00000372499		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372690	ENST00000496424		TCGA	LD	OV	TCGA-09-0367-01A	SAMD8	chr10	76928416	+	C10orf11	chr10	78316967	+
intron-3CDS	ENST00000359486	ENST00000329021		TCGA	LD	OV	TCGA-09-0367-01A	TCF20	chr22	42739485	-	NFAM1	chr22	42793962	-
intron-3CDS	ENST00000335626	ENST00000329021		TCGA	LD	OV	TCGA-09-0367-01A	TCF20	chr22	42739485	-	NFAM1	chr22	42793962	-
intron-3CDS	ENST00000404876	ENST00000329021		TCGA	LD	OV	TCGA-09-0367-01A	TCF20	chr22	42739485	-	NFAM1	chr22	42793962	-
intron-3CDS	ENST00000230323	ENST00000373025		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000230323	ENST00000425343		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000358871	ENST00000373025		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000358871	ENST00000425343		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000420312	ENST00000373025		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000420312	ENST00000425343		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000403298	ENST00000373025		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000403298	ENST00000425343		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
5UTR-3CDS	ENST00000373033	ENST00000373025		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
5UTR-3CDS	ENST00000373033	ENST00000425343		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000394283	ENST00000373025		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
intron-3CDS	ENST00000394283	ENST00000425343		TCGA	LD	OV	TCGA-09-0367-01A	TFEB	chr6	41703088	-	PGC	chr6	41710227	-
5UTR-3CDS	ENST00000400227	ENST00000438552		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000400227	ENST00000381342		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000400227	ENST00000339610		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000349736	ENST00000438552		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000349736	ENST00000381342		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000349736	ENST00000339610		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000217244	ENST00000438552		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000217244	ENST00000381342		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000217244	ENST00000339610		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000400217	ENST00000438552		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000400217	ENST00000381342		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000400217	ENST00000339610		TCGA	LD	OV	TCGA-09-0369-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
intron-intron	ENST00000324344	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000324344	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000324344	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000324344	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000324344	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563934	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563934	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563934	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563934	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563934	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	DCUN1D3	chr16	20907630	-	CRYM	chr16	21255389	-
5UTR-intron	ENST00000564349	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
5UTR-intron	ENST00000564349	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
5UTR-intron	ENST00000564349	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
5UTR-intron	ENST00000564349	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
5UTR-intron	ENST00000564349	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000300005	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000300005	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000300005	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000300005	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000300005	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000357967	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000357967	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000357967	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000357967	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000357967	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000569729	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000569729	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000569729	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000569729	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000569729	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000389345	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000389345	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000389345	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000389345	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000389345	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563117	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563117	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563117	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563117	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000563117	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000568251	ENST00000543948		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000568251	ENST00000219599		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000568251	ENST00000415987		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000568251	ENST00000396023		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
intron-intron	ENST00000568251	ENST00000574787		TCGA	LD	OV	TCGA-09-0369-01A	ERI2	chr16	20907630	-	CRYM	chr16	21255389	-
Frame-shit	ENST00000356692	ENST00000505113		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
Frame-shit	ENST00000356692	ENST00000316418		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-5UTR	ENST00000356692	ENST00000512529		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000356692	ENST00000515206		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000356692	ENST00000506456		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5UTR-3CDS	ENST00000295862	ENST00000505113		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5UTR-3CDS	ENST00000295862	ENST00000316418		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5UTR-5UTR	ENST00000295862	ENST00000512529		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5UTR-intron	ENST00000295862	ENST00000515206		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5UTR-intron	ENST00000295862	ENST00000506456		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
Frame-shit	ENST00000394284	ENST00000505113		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
Frame-shit	ENST00000394284	ENST00000316418		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-5UTR	ENST00000394284	ENST00000512529		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000394284	ENST00000515206		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000394284	ENST00000506456		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
Frame-shit	ENST00000495566	ENST00000505113		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
Frame-shit	ENST00000495566	ENST00000316418		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-5UTR	ENST00000495566	ENST00000512529		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000495566	ENST00000515206		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000495566	ENST00000506456		TCGA	LD	OV	TCGA-09-0369-01A	PPP4R2	chr3	73047309	+	AHRR	chr5	422844	+
5UTR-3CDS	ENST00000588552	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000588552	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-intron	ENST00000588552	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-intron	ENST00000588552	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-intron	ENST00000588552	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000262963	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000262963	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000262963	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000262963	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000372412	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000372412	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000372412	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000372412	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000348075	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000348075	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000348075	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000348075	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000357368	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000357368	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000357368	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000357368	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
Frame-shit	ENST00000353284	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000353284	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000353284	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000353284	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000587303	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000587303	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000587303	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000587303	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000588012	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000588012	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000588012	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000588012	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000592099	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000592099	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000592099	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000592099	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000553525		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000555571		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000553530		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000556437		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000355512		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000406236		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000404301		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000407322		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000402788		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
In-frame	ENST00000590509	ENST00000343854		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000590509	ENST00000434263		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000590509	ENST00000554782		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5CDS-intron	ENST00000590509	ENST00000553690		TCGA	LD	OV	TCGA-09-0369-01A	PTPRS	chr19	5286061	-	RGS6	chr14	72818803	+
5UTR-3CDS	ENST00000261593	ENST00000340652		TCGA	LD	OV	TCGA-09-0369-01A	RNF138	chr18	29672198	+	VWC2	chr7	49842307	+
3UTR-3CDS	ENST00000585103	ENST00000340652		TCGA	LD	OV	TCGA-09-0369-01A	RNF138	chr18	29672198	+	VWC2	chr7	49842307	+
intron-3CDS	ENST00000257190	ENST00000340652		TCGA	LD	OV	TCGA-09-0369-01A	RNF138	chr18	29672198	+	VWC2	chr7	49842307	+
Frame-shit	ENST00000216254	ENST00000371558		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
Frame-shit	ENST00000216254	ENST00000346330		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
5CDS-intron	ENST00000216254	ENST00000469205		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
5CDS-intron	ENST00000216254	ENST00000371569		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
Frame-shit	ENST00000396512	ENST00000371558		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
Frame-shit	ENST00000396512	ENST00000346330		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
5CDS-intron	ENST00000396512	ENST00000469205		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
5CDS-intron	ENST00000396512	ENST00000371569		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
intron-3CDS	ENST00000466237	ENST00000371558		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
intron-3CDS	ENST00000466237	ENST00000346330		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
intron-intron	ENST00000466237	ENST00000469205		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
intron-intron	ENST00000466237	ENST00000371569		TCGA	LD	OV	TCGA-09-1659-01B	ACO2	chr22	41865186	+	UBE2A	chrX	118716551	+
3UTR-5UTR	ENST00000341505	ENST00000531894		TCGA	LD	OV	TCGA-09-1659-01B	CBLC	chr19	45303707	+	PDXDC2P	chr16	70020412	-
3UTR-intron	ENST00000341505	ENST00000525173		TCGA	LD	OV	TCGA-09-1659-01B	CBLC	chr19	45303707	+	PDXDC2P	chr16	70020412	-
3UTR-5UTR	ENST00000270279	ENST00000531894		TCGA	LD	OV	TCGA-09-1659-01B	CBLC	chr19	45303707	+	PDXDC2P	chr16	70020412	-
3UTR-intron	ENST00000270279	ENST00000525173		TCGA	LD	OV	TCGA-09-1659-01B	CBLC	chr19	45303707	+	PDXDC2P	chr16	70020412	-
In-frame	ENST00000398970	ENST00000313486		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
In-frame	ENST00000398970	ENST00000539476		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
In-frame	ENST00000300574	ENST00000313486		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
In-frame	ENST00000300574	ENST00000539476		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
In-frame	ENST00000574295	ENST00000313486		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
In-frame	ENST00000574295	ENST00000539476		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
intron-3CDS	ENST00000572145	ENST00000313486		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
intron-3CDS	ENST00000572145	ENST00000539476		TCGA	LD	OV	TCGA-09-1659-01B	CRK	chr17	1359171	-	PITPNA	chr17	1442246	-
intron-3CDS	ENST00000341217	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000341217	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-3CDS	ENST00000581407	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581407	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-3CDS	ENST00000582266	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000582266	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-3CDS	ENST00000452648	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000452648	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-3CDS	ENST00000582059	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000582059	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-3CDS	ENST00000583953	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
intron-intron	ENST00000583953	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-3CDS	ENST00000577682	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000577682	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-3CDS	ENST00000583522	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000583522	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-3CDS	ENST00000581381	ENST00000438132		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000542263		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000417362		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000251143		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000543152		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000448695		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000544275		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
5UTR-intron	ENST00000581381	ENST00000538853		TCGA	LD	OV	TCGA-09-1659-01B	FAM222B	chr17	27169700	-	C16orf62	chr16	19627436	+
In-frame	ENST00000301067	ENST00000301068		TCGA	LD	OV	TCGA-09-1662-01A	KMT2D	chr12	49439703	-	RHEBL1	chr12	49460818	-
intron-3CDS	ENST00000549743	ENST00000301068		TCGA	LD	OV	TCGA-09-1662-01A	KMT2D	chr12	49439703	-	RHEBL1	chr12	49460818	-
5UTR-3CDS	ENST00000448637	ENST00000282488		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000282486		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000355460		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000493459		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000324210		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000498502		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000545754		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000357472		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000324196		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000485910		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000463374		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000492948		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000448637	ENST00000485509		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-intron	ENST00000448637	ENST00000461436		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000282488		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000282486		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000355460		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000493459		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000324210		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000498502		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000545754		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000357472		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000324196		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000485910		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000463374		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000492948		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000312675	ENST00000485509		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000312675	ENST00000461436		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000282488		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000282486		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000355460		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000493459		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000324210		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000498502		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000545754		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000357472		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000324196		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000485910		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000463374		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000492948		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-3CDS	ENST00000543006	ENST00000485509		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
5UTR-intron	ENST00000543006	ENST00000461436		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000282488		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000282486		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000355460		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000493459		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000324210		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000498502		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000545754		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000357472		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000324196		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000485910		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000463374		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000492948		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-3CDS	ENST00000471917	ENST00000485509		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
intron-intron	ENST00000471917	ENST00000461436		TCGA	LD	OV	TCGA-09-1662-01A	LPP	chr3	188059507	+	MBNL1	chr3	152132730	+
Frame-shit	ENST00000442123	ENST00000261700		TCGA	LD	OV	TCGA-09-1662-01A	STYX	chr14	53197249	+	C14orf166	chr14	52458035	+
Frame-shit	ENST00000442123	ENST00000556760		TCGA	LD	OV	TCGA-09-1662-01A	STYX	chr14	53197249	+	C14orf166	chr14	52458035	+
Frame-shit	ENST00000354586	ENST00000261700		TCGA	LD	OV	TCGA-09-1662-01A	STYX	chr14	53197249	+	C14orf166	chr14	52458035	+
Frame-shit	ENST00000354586	ENST00000556760		TCGA	LD	OV	TCGA-09-1662-01A	STYX	chr14	53197249	+	C14orf166	chr14	52458035	+
intron-3CDS	ENST00000556861	ENST00000261700		TCGA	LD	OV	TCGA-09-1662-01A	STYX	chr14	53197249	+	C14orf166	chr14	52458035	+
intron-3CDS	ENST00000556861	ENST00000556760		TCGA	LD	OV	TCGA-09-1662-01A	STYX	chr14	53197249	+	C14orf166	chr14	52458035	+
Frame-shit	ENST00000438015	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000438015	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000438015	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000427383	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000427383	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000427383	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000428830	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000428830	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000428830	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
3UTR-3CDS	ENST00000532449	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
3UTR-3CDS	ENST00000532449	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
3UTR-intron	ENST00000532449	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000544373	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000544373	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000544373	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000534070	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000534070	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000534070	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000524737	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000524737	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000524737	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000278916	ENST00000371547		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
Frame-shit	ENST00000278916	ENST00000371552		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000371543		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000443748		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000260762		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000278916	ENST00000497262		TCGA	LD	OV	TCGA-09-1665-01B	CHEK1	chr11	125507439	+	EXOC6	chr10	94757231	+
5CDS-intron	ENST00000256509	ENST00000264926		TCGA	LD	OV	TCGA-09-1665-01B	CHL1	chr3	440831	+	RAD18	chr3	8817350	-
5CDS-intron	ENST00000256509	ENST00000495087		TCGA	LD	OV	TCGA-09-1665-01B	CHL1	chr3	440831	+	RAD18	chr3	8817350	-
5CDS-intron	ENST00000397491	ENST00000264926		TCGA	LD	OV	TCGA-09-1665-01B	CHL1	chr3	440831	+	RAD18	chr3	8817350	-
5CDS-intron	ENST00000397491	ENST00000495087		TCGA	LD	OV	TCGA-09-1665-01B	CHL1	chr3	440831	+	RAD18	chr3	8817350	-
intron-intron	ENST00000489224	ENST00000264926		TCGA	LD	OV	TCGA-09-1665-01B	CHL1	chr3	440831	+	RAD18	chr3	8817350	-
intron-intron	ENST00000489224	ENST00000495087		TCGA	LD	OV	TCGA-09-1665-01B	CHL1	chr3	440831	+	RAD18	chr3	8817350	-
5UTR-3CDS	ENST00000507810	ENST00000379638		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5UTR-3CDS	ENST00000507810	ENST00000513339		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5UTR-3CDS	ENST00000507810	ENST00000545426		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5UTR-5UTR	ENST00000507810	ENST00000474542		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5UTR-intron	ENST00000507810	ENST00000504247		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
In-frame	ENST00000261486	ENST00000379638		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
In-frame	ENST00000261486	ENST00000513339		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
Frame-shit	ENST00000261486	ENST00000545426		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5CDS-5UTR	ENST00000261486	ENST00000474542		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5CDS-intron	ENST00000261486	ENST00000504247		TCGA	LD	OV	TCGA-09-1665-01B	EPB41L4A	chr5	111519713	-	REEP5	chr5	112238215	-
5UTR-5UTR	ENST00000397338	ENST00000318789		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000397338	ENST00000475937		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000397338	ENST00000493089		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000397338	ENST00000484350		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000397338	ENST00000318779		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000397338	ENST00000491238		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000397338	ENST00000498215		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000397338	ENST00000468577		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000397338	ENST00000472382		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000282512	ENST00000318789		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000282512	ENST00000475937		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000282512	ENST00000493089		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000282512	ENST00000484350		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000282512	ENST00000318779		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000282512	ENST00000491238		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000282512	ENST00000498215		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000282512	ENST00000468577		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000282512	ENST00000472382		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000381937	ENST00000318789		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000381937	ENST00000475937		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000381937	ENST00000493089		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000381937	ENST00000484350		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000381937	ENST00000318779		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-intron	ENST00000381937	ENST00000491238		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000381937	ENST00000498215		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-intron	ENST00000381937	ENST00000468577		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-intron	ENST00000381937	ENST00000472382		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-5UTR	ENST00000511613	ENST00000318789		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-5UTR	ENST00000511613	ENST00000475937		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-5UTR	ENST00000511613	ENST00000493089		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-5UTR	ENST00000511613	ENST00000484350		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-5UTR	ENST00000511613	ENST00000318779		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-intron	ENST00000511613	ENST00000491238		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-5UTR	ENST00000511613	ENST00000498215		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-intron	ENST00000511613	ENST00000468577		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-intron	ENST00000511613	ENST00000472382		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000506945	ENST00000318789		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000506945	ENST00000475937		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000506945	ENST00000493089		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000506945	ENST00000484350		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000506945	ENST00000318779		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000506945	ENST00000491238		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-5UTR	ENST00000506945	ENST00000498215		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000506945	ENST00000468577		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5UTR-intron	ENST00000506945	ENST00000472382		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000514504	ENST00000318789		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000514504	ENST00000475937		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000514504	ENST00000493089		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000514504	ENST00000484350		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000514504	ENST00000318779		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-intron	ENST00000514504	ENST00000491238		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-5UTR	ENST00000514504	ENST00000498215		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-intron	ENST00000514504	ENST00000468577		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
5CDS-intron	ENST00000514504	ENST00000472382		TCGA	LD	OV	TCGA-09-1665-01B	NADK2	chr5	36227579	-	FOXP1	chr3	71247543	-
intron-3CDS	ENST00000232375	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000536104	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000416568	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000541519	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000383734	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000490115	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000545984	ENST00000330862		TCGA	LD	OV	TCGA-09-1665-01B	PFKFB4	chr3	48588120	-	TMEM89	chr3	48658965	-
intron-3CDS	ENST00000391777	ENST00000270530		TCGA	LD	OV	TCGA-09-1665-01B	ZNF321P	chr19	53445794	-	EVI5L	chr19	7927858	+
intron-3CDS	ENST00000391777	ENST00000538904		TCGA	LD	OV	TCGA-09-1665-01B	ZNF321P	chr19	53445794	-	EVI5L	chr19	7927858	+
intron-intron	ENST00000391777	ENST00000600802		TCGA	LD	OV	TCGA-09-1665-01B	ZNF321P	chr19	53445794	-	EVI5L	chr19	7927858	+
In-frame	ENST00000544604	ENST00000541738		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000409411		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000409957		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000409936		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000260648		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000409272		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000410081		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000378520		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
In-frame	ENST00000544604	ENST00000378511		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5CDS-intron	ENST00000544604	ENST00000540817		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000541738		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000409411		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000409957		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000409936		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000260648		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000409272		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000410081		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000378520		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-3CDS	ENST00000332811	ENST00000378511		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
5UTR-intron	ENST00000332811	ENST00000540817		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000541738		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000409411		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000409957		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000409936		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000260648		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000409272		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000410081		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000378520		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000402174	ENST00000378511		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-intron	ENST00000402174	ENST00000540817		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000541738		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000409411		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000409957		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000409936		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000260648		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000409272		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000410081		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000378520		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000406323	ENST00000378511		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-intron	ENST00000406323	ENST00000540817		TCGA	LD	OV	TCGA-09-1665-01B	ZNRF3	chr22	29280054	+	PREPL	chr2	44556251	-
intron-3CDS	ENST00000591142	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591142	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591142	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591142	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-intron	ENST00000591142	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000591601	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000591601	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
In-frame	ENST00000591601	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000591601	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000591601	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
In-frame	ENST00000309340	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000309340	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000309340	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000309340	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000309340	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
In-frame	ENST00000250896	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000250896	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000250896	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
Frame-shit	ENST00000250896	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000250896	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5UTR-3CDS	ENST00000541165	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5UTR-3CDS	ENST00000541165	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5UTR-3CDS	ENST00000541165	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5UTR-3CDS	ENST00000541165	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
5UTR-intron	ENST00000541165	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591588	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591588	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591588	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000591588	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-intron	ENST00000591588	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000588014	ENST00000355272		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000588014	ENST00000356926		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000588014	ENST00000350812		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000588014	ENST00000345016		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
intron-intron	ENST00000588014	ENST00000590683		TCGA	LD	OV	TCGA-09-1666-01A	MKNK2	chr19	2050800	-	AP3D1	chr19	2102267	-
In-frame	ENST00000302503	ENST00000525123		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
Frame-shit	ENST00000302503	ENST00000298861		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
Frame-shit	ENST00000302503	ENST00000357610		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5CDS-intron	ENST00000302503	ENST00000528244		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5CDS-intron	ENST00000302503	ENST00000529712		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5UTR-3CDS	ENST00000542981	ENST00000525123		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5UTR-3CDS	ENST00000542981	ENST00000298861		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5UTR-3CDS	ENST00000542981	ENST00000357610		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5UTR-intron	ENST00000542981	ENST00000528244		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5UTR-intron	ENST00000542981	ENST00000529712		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
intron-3CDS	ENST00000534074	ENST00000525123		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
intron-3CDS	ENST00000534074	ENST00000298861		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
intron-3CDS	ENST00000534074	ENST00000357610		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
intron-intron	ENST00000534074	ENST00000528244		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
intron-intron	ENST00000534074	ENST00000529712		TCGA	LD	OV	TCGA-09-1666-01A	MTCH2	chr11	47660251	-	AGBL2	chr11	47681898	-
5UTR-3CDS	ENST00000444631	ENST00000262888		TCGA	LD	OV	TCGA-09-1666-01A	SARNP	chr12	56211450	-	KCNN4	chr19	44280788	-
In-frame	ENST00000336133	ENST00000262888		TCGA	LD	OV	TCGA-09-1666-01A	SARNP	chr12	56211450	-	KCNN4	chr19	44280788	-
In-frame	ENST00000552080	ENST00000262888		TCGA	LD	OV	TCGA-09-1666-01A	SARNP	chr12	56211450	-	KCNN4	chr19	44280788	-
5CDS-5UTR	ENST00000487273	ENST00000535699		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000487273	ENST00000538660		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000487273	ENST00000367400		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000487273	ENST00000367399		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000487273	ENST00000543483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000487273	ENST00000544212		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000487273	ENST00000367397		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000487273	ENST00000476483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000466936	ENST00000535699		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000466936	ENST00000538660		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000466936	ENST00000367400		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000466936	ENST00000367399		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000466936	ENST00000543483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000466936	ENST00000544212		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000466936	ENST00000367397		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000466936	ENST00000476483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000481513	ENST00000535699		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000481513	ENST00000538660		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000481513	ENST00000367400		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000481513	ENST00000367399		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000481513	ENST00000543483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000481513	ENST00000544212		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000481513	ENST00000367397		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
5CDS-intron	ENST00000481513	ENST00000476483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000484143	ENST00000535699		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000484143	ENST00000538660		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000484143	ENST00000367400		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-5UTR	ENST00000484143	ENST00000367399		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-intron	ENST00000484143	ENST00000543483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-intron	ENST00000484143	ENST00000544212		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-intron	ENST00000484143	ENST00000367397		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
intron-intron	ENST00000484143	ENST00000476483		TCGA	LD	OV	TCGA-09-1667-01C	ADAM9	chr8	38854679	+	CRB1	chr1	197297552	+
Frame-shit	ENST00000561294	ENST00000271732		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
In-frame	ENST00000561294	ENST00000540514		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000561294	ENST00000479757		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000345896	ENST00000271732		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000345896	ENST00000540514		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000345896	ENST00000479757		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
Frame-shit	ENST00000271688	ENST00000271732		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
Frame-shit	ENST00000271688	ENST00000540514		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000271688	ENST00000479757		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
In-frame	ENST00000368954	ENST00000271732		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
Frame-shit	ENST00000368954	ENST00000540514		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000368954	ENST00000479757		TCGA	LD	OV	TCGA-09-1667-01C	CERS2	chr1	150941394	-	GOLPH3L	chr1	150621224	-
5CDS-intron	ENST00000210060	ENST00000592864		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000210060	ENST00000360228		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000210060	ENST00000573710		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000210060	ENST00000574822		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000351660	ENST00000592864		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000351660	ENST00000360228		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000351660	ENST00000573710		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
5CDS-intron	ENST00000351660	ENST00000574822		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000594424	ENST00000592864		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000594424	ENST00000360228		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000594424	ENST00000573710		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000594424	ENST00000574822		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000599481	ENST00000592864		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000599481	ENST00000360228		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000599481	ENST00000573710		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000599481	ENST00000574822		TCGA	LD	OV	TCGA-09-1667-01C	DHPS	chr19	12792374	-	CACNA1A	chr19	13325422	-
intron-intron	ENST00000252577	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000252577	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000252577	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000252577	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000360315	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000360315	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000360315	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000360315	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000537887	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000537887	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000537887	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000537887	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000404158	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000404158	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000404158	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000404158	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000358713	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000358713	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000358713	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000358713	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000429563	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000429563	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000429563	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000429563	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000473184	ENST00000592613		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000473184	ENST00000591366		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000473184	ENST00000592160		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
intron-intron	ENST00000473184	ENST00000343769		TCGA	LD	OV	TCGA-09-1667-01C	GATAD2A	chr19	19516828	+	ZNF93	chr19	20043991	+
Frame-shit	ENST00000239690	ENST00000423932		TCGA	LD	OV	TCGA-09-1667-01C	NUDCD1	chr8	110283234	-	OR10J1	chr1	159409566	+
Frame-shit	ENST00000427660	ENST00000423932		TCGA	LD	OV	TCGA-09-1667-01C	NUDCD1	chr8	110283234	-	OR10J1	chr1	159409566	+
Frame-shit	ENST00000260128	ENST00000396020		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000260128	ENST00000245458		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000260128	ENST00000557111		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000458141	ENST00000396020		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000458141	ENST00000245458		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000458141	ENST00000557111		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000402687	ENST00000396020		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000402687	ENST00000245458		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000402687	ENST00000557111		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000419716	ENST00000396020		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000419716	ENST00000245458		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000419716	ENST00000557111		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
3UTR-3CDS	ENST00000521946	ENST00000396020		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
3UTR-3CDS	ENST00000521946	ENST00000245458		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
3UTR-5UTR	ENST00000521946	ENST00000557111		TCGA	LD	OV	TCGA-09-1667-01C	SULF1	chr8	70512988	+	RPS29	chr14	50052767	-
Frame-shit	ENST00000517970	ENST00000539993		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000517970	ENST00000518698		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000517970	ENST00000349492		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000517970	ENST00000523686		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000517970	ENST00000348340		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000517970	ENST00000337103		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000517970	ENST00000325233		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000349423	ENST00000539993		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000349423	ENST00000518698		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000349423	ENST00000349492		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000349423	ENST00000523686		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000349423	ENST00000348340		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000349423	ENST00000337103		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000349423	ENST00000325233		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000341922	ENST00000539993		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000341922	ENST00000518698		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000341922	ENST00000349492		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000341922	ENST00000523686		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000341922	ENST00000348340		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000341922	ENST00000337103		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000341922	ENST00000325233		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000265428	ENST00000539993		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
Frame-shit	ENST00000265428	ENST00000518698		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000265428	ENST00000349492		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000265428	ENST00000523686		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000265428	ENST00000348340		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000265428	ENST00000337103		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-intron	ENST00000265428	ENST00000325233		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-3CDS	ENST00000523863	ENST00000539993		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-3CDS	ENST00000523863	ENST00000518698		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-intron	ENST00000523863	ENST00000349492		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-intron	ENST00000523863	ENST00000523686		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-intron	ENST00000523863	ENST00000348340		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-intron	ENST00000523863	ENST00000337103		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
intron-intron	ENST00000523863	ENST00000325233		TCGA	LD	OV	TCGA-09-1667-01C	WWP1	chr8	87442980	+	C8orf34	chr8	69688634	+
5CDS-5UTR	ENST00000356341	ENST00000340067		TCGA	LD	OV	TCGA-09-1669-01A	PAK1	chr11	77066713	-	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000530617	ENST00000340067		TCGA	LD	OV	TCGA-09-1669-01A	PAK1	chr11	77066713	-	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000278568	ENST00000340067		TCGA	LD	OV	TCGA-09-1669-01A	PAK1	chr11	77066713	-	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000528203	ENST00000340067		TCGA	LD	OV	TCGA-09-1669-01A	PAK1	chr11	77066713	-	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000525542	ENST00000340067		TCGA	LD	OV	TCGA-09-1669-01A	PAK1	chr11	77066713	-	KCTD21	chr11	77885629	-
Frame-shit	ENST00000397910	ENST00000361757		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
Frame-shit	ENST00000397910	ENST00000587024		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
Frame-shit	ENST00000397910	ENST00000438103		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
Frame-shit	ENST00000380951	ENST00000361757		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
Frame-shit	ENST00000380951	ENST00000587024		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
Frame-shit	ENST00000380951	ENST00000438103		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000596956	ENST00000361757		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000596956	ENST00000587024		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000596956	ENST00000438103		TCGA	LD	OV	TCGA-09-1670-01A	MUC16	chr19	8968880	-	SBNO2	chr19	1127764	-
5UTR-3CDS	ENST00000264436	ENST00000303714		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000264436	ENST00000409829		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000264436	ENST00000409349		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
intron-3CDS	ENST00000407644	ENST00000303714		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
intron-3CDS	ENST00000407644	ENST00000409829		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
intron-3CDS	ENST00000407644	ENST00000409349		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000355733	ENST00000303714		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000355733	ENST00000409829		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000355733	ENST00000409349		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000413157	ENST00000303714		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000413157	ENST00000409829		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000413157	ENST00000409349		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
Frame-shit	ENST00000430656	ENST00000303714		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
Frame-shit	ENST00000430656	ENST00000409829		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
Frame-shit	ENST00000430656	ENST00000409349		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000473232	ENST00000303714		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000473232	ENST00000409829		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000473232	ENST00000409349		TCGA	LD	OV	TCGA-09-1673-01A	ADD2	chr2	70995018	-	ANTXR1	chr2	69329974	+
5UTR-3CDS	ENST00000373233	ENST00000290231		TCGA	LD	OV	TCGA-09-1673-01A	CHD6	chr20	40246979	-	NCOA5	chr20	44691528	-
5UTR-3CDS	ENST00000309279	ENST00000290231		TCGA	LD	OV	TCGA-09-1673-01A	CHD6	chr20	40246979	-	NCOA5	chr20	44691528	-
5UTR-3CDS	ENST00000373222	ENST00000290231		TCGA	LD	OV	TCGA-09-1673-01A	CHD6	chr20	40246979	-	NCOA5	chr20	44691528	-
intron-3CDS	ENST00000480022	ENST00000290231		TCGA	LD	OV	TCGA-09-1673-01A	CHD6	chr20	40246979	-	NCOA5	chr20	44691528	-
In-frame	ENST00000261401	ENST00000389153		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000261401	ENST00000608853		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000261401	ENST00000377617		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000261401	ENST00000550104		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000261401	ENST00000542287		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000261401	ENST00000535949		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000261401	ENST00000549455		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
Frame-shit	ENST00000541050	ENST00000389153		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
Frame-shit	ENST00000541050	ENST00000608853		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
Frame-shit	ENST00000541050	ENST00000377617		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
Frame-shit	ENST00000541050	ENST00000550104		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
Frame-shit	ENST00000541050	ENST00000542287		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
Frame-shit	ENST00000541050	ENST00000535949		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000541050	ENST00000549455		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000549384	ENST00000389153		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000549384	ENST00000608853		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000549384	ENST00000377617		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000549384	ENST00000550104		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000549384	ENST00000542287		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000549384	ENST00000535949		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-intron	ENST00000549384	ENST00000549455		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000421578	ENST00000389153		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000421578	ENST00000608853		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000421578	ENST00000377617		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000421578	ENST00000550104		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000421578	ENST00000542287		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-3CDS	ENST00000421578	ENST00000535949		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
intron-intron	ENST00000421578	ENST00000549455		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000420959	ENST00000389153		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000420959	ENST00000608853		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000420959	ENST00000377617		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000420959	ENST00000550104		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000420959	ENST00000542287		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000420959	ENST00000535949		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000420959	ENST00000549455		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000549772	ENST00000389153		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000549772	ENST00000608853		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000549772	ENST00000377617		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000549772	ENST00000550104		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000549772	ENST00000542287		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000549772	ENST00000535949		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
5CDS-intron	ENST00000549772	ENST00000549455		TCGA	LD	OV	TCGA-09-1673-01A	CORO1C	chr12	109094900	-	ATXN2	chr12	111926584	-
In-frame	ENST00000415912	ENST00000344989		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000415912	ENST00000453840		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000415912	ENST00000341154		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000415912	ENST00000484146		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000415912	ENST00000374452		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000415912	ENST00000374453		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000415912	ENST00000343255		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000415912	ENST00000492112		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000415912	ENST00000374457		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000415912	ENST00000433682		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000415912	ENST00000374449		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000357071	ENST00000344989		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000357071	ENST00000453840		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000357071	ENST00000341154		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000357071	ENST00000484146		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000357071	ENST00000374452		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000357071	ENST00000374453		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000357071	ENST00000343255		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000357071	ENST00000492112		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000357071	ENST00000374457		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000357071	ENST00000433682		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000357071	ENST00000374449		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000374893	ENST00000344989		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000374893	ENST00000453840		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000374893	ENST00000341154		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000374893	ENST00000484146		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000374893	ENST00000374452		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000374893	ENST00000374453		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000374893	ENST00000343255		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000374893	ENST00000492112		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000374893	ENST00000374457		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000374893	ENST00000433682		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000374893	ENST00000374449		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000436918	ENST00000344989		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000436918	ENST00000453840		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000436918	ENST00000341154		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000436918	ENST00000484146		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000436918	ENST00000374452		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000436918	ENST00000374453		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000436918	ENST00000343255		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000436918	ENST00000492112		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000436918	ENST00000374457		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000436918	ENST00000433682		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000436918	ENST00000374449		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000264205	ENST00000344989		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
In-frame	ENST00000264205	ENST00000453840		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000264205	ENST00000341154		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000264205	ENST00000484146		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000264205	ENST00000374452		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000264205	ENST00000374453		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000264205	ENST00000343255		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000264205	ENST00000492112		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000264205	ENST00000374457		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000264205	ENST00000433682		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-intron	ENST00000264205	ENST00000374449		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-3CDS	ENST00000528294	ENST00000344989		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-3CDS	ENST00000528294	ENST00000453840		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-5UTR	ENST00000528294	ENST00000341154		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-5UTR	ENST00000528294	ENST00000484146		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-5UTR	ENST00000528294	ENST00000374452		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-5UTR	ENST00000528294	ENST00000374453		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-5UTR	ENST00000528294	ENST00000343255		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-5UTR	ENST00000528294	ENST00000492112		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-intron	ENST00000528294	ENST00000374457		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-intron	ENST00000528294	ENST00000433682		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5UTR-intron	ENST00000528294	ENST00000374449		TCGA	LD	OV	TCGA-09-1673-01A	ECE1	chr1	21573714	-	SRSF10	chr1	24305307	-
5CDS-5UTR	ENST00000595437	ENST00000261574		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000595437	ENST00000490680		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000595437	ENST00000539640		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000595437	ENST00000493492		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-5UTR	ENST00000376586	ENST00000261574		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000376586	ENST00000490680		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000376586	ENST00000539640		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000376586	ENST00000493492		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-5UTR	ENST00000319562	ENST00000261574		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000319562	ENST00000490680		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000319562	ENST00000539640		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
5CDS-intron	ENST00000319562	ENST00000493492		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-5UTR	ENST00000376581	ENST00000261574		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-intron	ENST00000376581	ENST00000490680		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-intron	ENST00000376581	ENST00000539640		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-intron	ENST00000376581	ENST00000493492		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-5UTR	ENST00000593990	ENST00000261574		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-intron	ENST00000593990	ENST00000490680		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-intron	ENST00000593990	ENST00000539640		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
intron-intron	ENST00000593990	ENST00000493492		TCGA	LD	OV	TCGA-09-1673-01A	FARP1	chr13	99020449	+	IPO5	chr13	98621977	+
Frame-shit	ENST00000373548	ENST00000345512		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
Frame-shit	ENST00000373548	ENST00000373779		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
Frame-shit	ENST00000373548	ENST00000356870		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
Frame-shit	ENST00000373548	ENST00000323874		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
Frame-shit	ENST00000373548	ENST00000428026		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
Frame-shit	ENST00000373548	ENST00000460170		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5CDS-intron	ENST00000373548	ENST00000415600		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000373541	ENST00000345512		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000373541	ENST00000373779		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000373541	ENST00000356870		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000373541	ENST00000323874		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000373541	ENST00000428026		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000373541	ENST00000460170		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-intron	ENST00000373541	ENST00000415600		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-3CDS	ENST00000490081	ENST00000345512		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-3CDS	ENST00000490081	ENST00000373779		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-3CDS	ENST00000490081	ENST00000356870		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-3CDS	ENST00000490081	ENST00000323874		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-3CDS	ENST00000490081	ENST00000428026		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-3CDS	ENST00000490081	ENST00000460170		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
intron-intron	ENST00000490081	ENST00000415600		TCGA	LD	OV	TCGA-09-1673-01A	HDAC1	chr1	32768334	+	PTPRU	chr1	29581787	+
5UTR-3CDS	ENST00000340067	ENST00000281038		TCGA	LD	OV	TCGA-09-1673-01A	KCTD21	chr11	77899619	-	NARS2	chr11	78154804	-
5UTR-3CDS	ENST00000340067	ENST00000528850		TCGA	LD	OV	TCGA-09-1673-01A	KCTD21	chr11	77899619	-	NARS2	chr11	78154804	-
In-frame	ENST00000359358	ENST00000581852		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000403303		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000383096		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000300227		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000579916		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000406524		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000583930		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000402325		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000579947		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000359358	ENST00000583550		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000581852		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000403303		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000383096		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000300227		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000579916		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000406524		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000583930		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000402325		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-3CDS	ENST00000358095	ENST00000579947		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
intron-intron	ENST00000358095	ENST00000583550		TCGA	LD	OV	TCGA-09-1673-01A	KLHL14	chr18	30260132	-	CCDC178	chr18	30554645	-
5CDS-5UTR	ENST00000545260	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000545260	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000545260	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000545260	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000545260	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000545693	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000545693	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000545693	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000545693	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000545693	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000350537	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000350537	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000350537	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000350537	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000350537	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000346874	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000346874	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000346874	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000346874	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000346874	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374789	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374789	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000374789	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374789	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374789	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374790	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374790	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000374790	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374790	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374790	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374794	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374794	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000374794	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374794	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374794	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374788	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374788	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000374788	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374788	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374788	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-5UTR	ENST00000466092	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-5UTR	ENST00000466092	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-3UTR	ENST00000466092	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-intron	ENST00000466092	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-intron	ENST00000466092	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374776	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374776	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000374776	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374776	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374776	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000340077	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000340077	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000340077	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000340077	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000340077	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-5UTR	ENST00000544292	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-5UTR	ENST00000544292	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-3UTR	ENST00000544292	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-intron	ENST00000544292	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-intron	ENST00000544292	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374773	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-5UTR	ENST00000374773	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-3UTR	ENST00000374773	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374773	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
5CDS-intron	ENST00000374773	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-5UTR	ENST00000374768	ENST00000395184		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-5UTR	ENST00000374768	ENST00000503995		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-3UTR	ENST00000374768	ENST00000506421		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-intron	ENST00000374768	ENST00000395183		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-intron	ENST00000374768	ENST00000264343		TCGA	LD	OV	TCGA-09-1673-01A	PARD3	chr10	34805907	-	ARHGAP24	chr4	86491675	+
intron-3CDS	ENST00000019317	ENST00000578921		TCGA	LD	OV	TCGA-09-1673-01A	RALBP1	chr18	9475689	+	RAB31	chr18	9775275	+
intron-intron	ENST00000019317	ENST00000577284		TCGA	LD	OV	TCGA-09-1673-01A	RALBP1	chr18	9475689	+	RAB31	chr18	9775275	+
5UTR-3CDS	ENST00000383432	ENST00000578921		TCGA	LD	OV	TCGA-09-1673-01A	RALBP1	chr18	9475689	+	RAB31	chr18	9775275	+
5UTR-intron	ENST00000383432	ENST00000577284		TCGA	LD	OV	TCGA-09-1673-01A	RALBP1	chr18	9475689	+	RAB31	chr18	9775275	+
In-frame	ENST00000334955	ENST00000006777		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
5CDS-5UTR	ENST00000334955	ENST00000318622		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
5CDS-intron	ENST00000334955	ENST00000468304		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
5CDS-intron	ENST00000334955	ENST00000428119		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
intron-3CDS	ENST00000445288	ENST00000006777		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
intron-5UTR	ENST00000445288	ENST00000318622		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
intron-intron	ENST00000445288	ENST00000468304		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
intron-intron	ENST00000445288	ENST00000428119		TCGA	LD	OV	TCGA-09-1673-01A	RSBN1L	chr7	77326372	+	RHBDD2	chr7	75511147	+
Frame-shit	ENST00000437398	ENST00000260403		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
5CDS-3UTR	ENST00000437398	ENST00000569369		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
Frame-shit	ENST00000314328	ENST00000260403		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
5CDS-3UTR	ENST00000314328	ENST00000569369		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
Frame-shit	ENST00000541492	ENST00000260403		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
5CDS-3UTR	ENST00000541492	ENST00000569369		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
intron-3CDS	ENST00000416735	ENST00000260403		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
intron-3UTR	ENST00000416735	ENST00000569369		TCGA	LD	OV	TCGA-09-1673-01A	SPECC1L	chr22	24743144	+	TMEM62	chr15	43461791	+
5CDS-3UTR	ENST00000192788	ENST00000426185		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000192788	ENST00000431426		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000192788	ENST00000421410		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000192788	ENST00000412408		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000192788	ENST00000425531		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000192788	ENST00000458106		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000192788	ENST00000425724		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-3UTR	ENST00000452449	ENST00000426185		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000452449	ENST00000431426		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000452449	ENST00000421410		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000452449	ENST00000412408		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000452449	ENST00000425531		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000452449	ENST00000458106		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000452449	ENST00000425724		TCGA	LD	OV	TCGA-09-1673-01A	UHRF1BP1	chr6	34760071	+	HCG22	chr6	31023487	+
5CDS-intron	ENST00000540468	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000540468	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000540468	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000540468	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000539919	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000539919	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000539919	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000539919	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000258091	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000258091	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000258091	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000258091	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000398422	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000398422	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000398422	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5CDS-intron	ENST00000398422	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000537131	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000537131	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000537131	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000537131	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000538797	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000538797	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000538797	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-intron	ENST00000538797	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
3UTR-intron	ENST00000473786	ENST00000377715		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
3UTR-intron	ENST00000473786	ENST00000409009		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
3UTR-intron	ENST00000473786	ENST00000264448		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
3UTR-intron	ENST00000473786	ENST00000464408		TCGA	LD	OV	TCGA-09-1674-01A	CCT7	chr2	73461512	+	ALMS1	chr2	73716761	+
5UTR-3CDS	ENST00000373839	ENST00000456518		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000397174		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000402904		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000361191		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000397171		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000361705		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000326197		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000372595		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000337495		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000372596		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-3CDS	ENST00000373839	ENST00000372597		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
5UTR-intron	ENST00000373839	ENST00000472037		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000456518		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000397174		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000402904		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000361191		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000397171		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000361705		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000326197		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000372595		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000337495		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000372596		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-3CDS	ENST00000493669	ENST00000372597		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
3UTR-intron	ENST00000493669	ENST00000472037		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000456518		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000397174		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000402904		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000361191		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000397171		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000361705		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000326197		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000372595		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000337495		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000372596		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-3CDS	ENST00000373836	ENST00000372597		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
intron-intron	ENST00000373836	ENST00000472037		TCGA	LD	OV	TCGA-09-1674-01A	PHACTR4	chr1	28696336	+	SCMH1	chr1	41541123	-
Frame-shit	ENST00000304239	ENST00000222345		TCGA	LD	OV	TCGA-09-1674-01A	ZNF420	chr19	37582023	+	SIPA1L3	chr19	38590602	+
5CDS-intron	ENST00000304239	ENST00000476317		TCGA	LD	OV	TCGA-09-1674-01A	ZNF420	chr19	37582023	+	SIPA1L3	chr19	38590602	+
Frame-shit	ENST00000337995	ENST00000222345		TCGA	LD	OV	TCGA-09-1674-01A	ZNF420	chr19	37582023	+	SIPA1L3	chr19	38590602	+
5CDS-intron	ENST00000337995	ENST00000476317		TCGA	LD	OV	TCGA-09-1674-01A	ZNF420	chr19	37582023	+	SIPA1L3	chr19	38590602	+
intron-3CDS	ENST00000586540	ENST00000222345		TCGA	LD	OV	TCGA-09-1674-01A	ZNF420	chr19	37582023	+	SIPA1L3	chr19	38590602	+
intron-intron	ENST00000586540	ENST00000476317		TCGA	LD	OV	TCGA-09-1674-01A	ZNF420	chr19	37582023	+	SIPA1L3	chr19	38590602	+
5UTR-3CDS	ENST00000300811	ENST00000292147		TCGA	LD	OV	TCGA-09-1674-01A	ZNF428	chr19	44123710	-	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000300811	ENST00000600651		TCGA	LD	OV	TCGA-09-1674-01A	ZNF428	chr19	44123710	-	ETHE1	chr19	44015718	-
Frame-shit	ENST00000381525	ENST00000295709		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000381525	ENST00000392106		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000381525	ENST00000392105		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000381525	ENST00000440309		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000362009	ENST00000295709		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000362009	ENST00000392106		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000362009	ENST00000392105		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
Frame-shit	ENST00000362009	ENST00000440309		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000307236	ENST00000295709		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000307236	ENST00000392106		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000307236	ENST00000392105		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000307236	ENST00000440309		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000542100	ENST00000295709		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000542100	ENST00000392106		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000542100	ENST00000392105		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000542100	ENST00000440309		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000546212	ENST00000295709		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000546212	ENST00000392106		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000546212	ENST00000392105		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5UTR-3CDS	ENST00000546212	ENST00000440309		TCGA	LD	OV	TCGA-09-2044-01B	E2F6	chr2	11605898	-	STK36	chr2	219545326	+
5CDS-3UTR	ENST00000373625	ENST00000487305		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
5CDS-3UTR	ENST00000373625	ENST00000336294		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
5CDS-3UTR	ENST00000373625	ENST00000456834		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
5CDS-5UTR	ENST00000373625	ENST00000373634		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
5CDS-5UTR	ENST00000373625	ENST00000427288		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000537234	ENST00000487305		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000537234	ENST00000336294		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000537234	ENST00000456834		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-5UTR	ENST00000537234	ENST00000373634		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-5UTR	ENST00000537234	ENST00000427288		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000469790	ENST00000487305		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000469790	ENST00000336294		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000469790	ENST00000456834		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-5UTR	ENST00000469790	ENST00000373634		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-5UTR	ENST00000469790	ENST00000427288		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000545542	ENST00000487305		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000545542	ENST00000336294		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-3UTR	ENST00000545542	ENST00000456834		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-5UTR	ENST00000545542	ENST00000373634		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
intron-5UTR	ENST00000545542	ENST00000427288		TCGA	LD	OV	TCGA-09-2044-01B	KPNA6	chr1	32573735	+	TMEM39B	chr1	32540552	+
Frame-shit	ENST00000295872	ENST00000232603		TCGA	LD	OV	TCGA-09-2044-01B	SPICE1	chr3	113207792	-	MORC1	chr3	108690249	-
Frame-shit	ENST00000295872	ENST00000483760		TCGA	LD	OV	TCGA-09-2044-01B	SPICE1	chr3	113207792	-	MORC1	chr3	108690249	-
Frame-shit	ENST00000397898	ENST00000263266		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
5CDS-intron	ENST00000397898	ENST00000595110		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
Frame-shit	ENST00000332859	ENST00000263266		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
5CDS-intron	ENST00000332859	ENST00000595110		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
5UTR-3CDS	ENST00000479153	ENST00000263266		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
5UTR-intron	ENST00000479153	ENST00000595110		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
intron-3CDS	ENST00000411651	ENST00000263266		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
intron-intron	ENST00000411651	ENST00000595110		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
Frame-shit	ENST00000397893	ENST00000263266		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
5CDS-intron	ENST00000397893	ENST00000595110		TCGA	LD	OV	TCGA-09-2044-01B	SUMO3	chr21	46233891	-	FAM83E	chr19	49107168	-
Frame-shit	ENST00000490103	ENST00000307790		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000490103	ENST00000397771		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000490103	ENST00000542393		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
5CDS-5UTR	ENST00000490103	ENST00000478812		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
In-frame	ENST00000397871	ENST00000307790		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
In-frame	ENST00000397871	ENST00000397771		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
In-frame	ENST00000397871	ENST00000542393		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
5CDS-5UTR	ENST00000397871	ENST00000478812		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000397872	ENST00000307790		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000397872	ENST00000397771		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000397872	ENST00000542393		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
5CDS-5UTR	ENST00000397872	ENST00000478812		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000397873	ENST00000307790		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000397873	ENST00000397771		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000397873	ENST00000542393		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
5CDS-5UTR	ENST00000397873	ENST00000478812		TCGA	LD	OV	TCGA-09-2044-01B	THOC5	chr22	29939418	-	ASCC2	chr22	30212062	-
Frame-shit	ENST00000535572	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
5CDS-5UTR	ENST00000535572	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
Frame-shit	ENST00000537687	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
5CDS-5UTR	ENST00000537687	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
Frame-shit	ENST00000315939	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
5CDS-5UTR	ENST00000315939	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
intron-3CDS	ENST00000447667	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
intron-5UTR	ENST00000447667	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
Frame-shit	ENST00000530271	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
5CDS-5UTR	ENST00000530271	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
3UTR-3CDS	ENST00000540360	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
3UTR-5UTR	ENST00000540360	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
intron-3CDS	ENST00000340908	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
intron-5UTR	ENST00000340908	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
intron-3CDS	ENST00000574564	ENST00000253108		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
intron-5UTR	ENST00000574564	ENST00000587168		TCGA	LD	OV	TCGA-09-2044-01B	WNK1	chr12	939326	+	EIF3G	chr19	10230376	-
In-frame	ENST00000253861	ENST00000372890		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
In-frame	ENST00000253861	ENST00000546104		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
5CDS-5UTR	ENST00000253861	ENST00000460320		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
In-frame	ENST00000539845	ENST00000372890		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
In-frame	ENST00000539845	ENST00000546104		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
5CDS-5UTR	ENST00000539845	ENST00000460320		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
In-frame	ENST00000393161	ENST00000372890		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
In-frame	ENST00000393161	ENST00000546104		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
5CDS-5UTR	ENST00000393161	ENST00000460320		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-3CDS	ENST00000545148	ENST00000372890		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-3CDS	ENST00000545148	ENST00000546104		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-5UTR	ENST00000545148	ENST00000460320		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-3CDS	ENST00000460346	ENST00000372890		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-3CDS	ENST00000460346	ENST00000546104		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-5UTR	ENST00000460346	ENST00000460320		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-3CDS	ENST00000541309	ENST00000372890		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-3CDS	ENST00000541309	ENST00000546104		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
intron-5UTR	ENST00000541309	ENST00000460320		TCGA	LD	OV	TCGA-09-2045-01A	EXOC4	chr7	133164892	+	TRUB2	chr9	131079505	-
Frame-shit	ENST00000262895	ENST00000377560		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000262895	ENST00000430131		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000262895	ENST00000550722		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
5CDS-intron	ENST00000262895	ENST00000549141		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000593562	ENST00000377560		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000593562	ENST00000430131		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000593562	ENST00000550722		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
5CDS-intron	ENST00000593562	ENST00000549141		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000301218	ENST00000377560		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000301218	ENST00000430131		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
Frame-shit	ENST00000301218	ENST00000550722		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
5CDS-intron	ENST00000301218	ENST00000549141		TCGA	LD	OV	TCGA-09-2045-01A	GRIK5	chr19	42557754	-	HECTD4	chr12	112681813	-
5CDS-3UTR	ENST00000316399	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000316399	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-intron	ENST00000316399	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000396356	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000396356	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-intron	ENST00000396356	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000352083	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000352083	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-intron	ENST00000352083	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000528252	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000528252	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-intron	ENST00000528252	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000527619	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000527619	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-intron	ENST00000527619	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000528429	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-3UTR	ENST00000528429	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
5CDS-intron	ENST00000528429	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
intron-3UTR	ENST00000533658	ENST00000497753		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
intron-3UTR	ENST00000533658	ENST00000310256		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
intron-intron	ENST00000533658	ENST00000366658		TCGA	LD	OV	TCGA-09-2045-01A	SOX6	chr11	16205432	-	ARV1	chr1	231124066	+
In-frame	ENST00000407595	ENST00000357410		TCGA	LD	OV	TCGA-09-2051-01A	CCDC85A	chr2	56570090	+	EYA2	chr20	45771698	+
In-frame	ENST00000407595	ENST00000327619		TCGA	LD	OV	TCGA-09-2051-01A	CCDC85A	chr2	56570090	+	EYA2	chr20	45771698	+
5CDS-intron	ENST00000407595	ENST00000497428		TCGA	LD	OV	TCGA-09-2051-01A	CCDC85A	chr2	56570090	+	EYA2	chr20	45771698	+
5CDS-intron	ENST00000407595	ENST00000317304		TCGA	LD	OV	TCGA-09-2051-01A	CCDC85A	chr2	56570090	+	EYA2	chr20	45771698	+
5CDS-5UTR	ENST00000532982	ENST00000345732		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000532982	ENST00000532073		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000532982	ENST00000534668		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000532982	ENST00000528313		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-3UTR	ENST00000532982	ENST00000534503		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000532982	ENST00000389939		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000227451	ENST00000345732		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000227451	ENST00000532073		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000227451	ENST00000534668		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000227451	ENST00000528313		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-3UTR	ENST00000227451	ENST00000534503		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
5CDS-5UTR	ENST00000227451	ENST00000389939		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
intron-5UTR	ENST00000531902	ENST00000345732		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
intron-5UTR	ENST00000531902	ENST00000532073		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
intron-5UTR	ENST00000531902	ENST00000534668		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
intron-5UTR	ENST00000531902	ENST00000528313		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
intron-3UTR	ENST00000531902	ENST00000534503		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
intron-5UTR	ENST00000531902	ENST00000389939		TCGA	LD	OV	TCGA-09-2051-01A	DTX4	chr11	58949935	+	MS4A1	chr11	60229832	+
Frame-shit	ENST00000297423	ENST00000221930		TCGA	LD	OV	TCGA-09-2051-01A	SPIDR	chr8	48206619	+	TGFB1	chr19	41838186	-
Frame-shit	ENST00000518074	ENST00000221930		TCGA	LD	OV	TCGA-09-2051-01A	SPIDR	chr8	48206619	+	TGFB1	chr19	41838186	-
Frame-shit	ENST00000541342	ENST00000221930		TCGA	LD	OV	TCGA-09-2051-01A	SPIDR	chr8	48206619	+	TGFB1	chr19	41838186	-
3UTR-3CDS	ENST00000521214	ENST00000221930		TCGA	LD	OV	TCGA-09-2051-01A	SPIDR	chr8	48206619	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000517693	ENST00000221930		TCGA	LD	OV	TCGA-09-2051-01A	SPIDR	chr8	48206619	+	TGFB1	chr19	41838186	-
intron-3CDS	ENST00000518060	ENST00000221930		TCGA	LD	OV	TCGA-09-2051-01A	SPIDR	chr8	48206619	+	TGFB1	chr19	41838186	-
In-frame	ENST00000380249	ENST00000432825		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
In-frame	ENST00000380249	ENST00000541829		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
5CDS-5UTR	ENST00000380249	ENST00000543968		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
In-frame	ENST00000338382	ENST00000432825		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
In-frame	ENST00000338382	ENST00000541829		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
5CDS-5UTR	ENST00000338382	ENST00000543968		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
In-frame	ENST00000605086	ENST00000432825		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
In-frame	ENST00000605086	ENST00000541829		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
5CDS-5UTR	ENST00000605086	ENST00000543968		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
intron-3CDS	ENST00000604828	ENST00000432825		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
intron-3CDS	ENST00000604828	ENST00000541829		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
intron-5UTR	ENST00000604828	ENST00000543968		TCGA	LD	OV	TCGA-09-2054-01A	FOCAD	chr9	20885229	+	FBXO10	chr9	37529257	-
intron-3CDS	ENST00000394243	ENST00000427410		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000394243	ENST00000447388		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000394243	ENST00000425457		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000394243	ENST00000456393		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000394243	ENST00000372654		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000394243	ENST00000372653		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000394243	ENST00000372652		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000394243	ENST00000372651		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000394243	ENST00000440226		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000394243	ENST00000308733		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000394243	ENST00000483091		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000522122	ENST00000427410		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000522122	ENST00000447388		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000522122	ENST00000425457		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000522122	ENST00000456393		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000522122	ENST00000372654		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000522122	ENST00000372653		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000522122	ENST00000372652		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000522122	ENST00000372651		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000522122	ENST00000440226		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000522122	ENST00000308733		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000522122	ENST00000483091		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000518872	ENST00000427410		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000518872	ENST00000447388		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000518872	ENST00000425457		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000518872	ENST00000456393		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000518872	ENST00000372654		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000518872	ENST00000372653		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000518872	ENST00000372652		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000518872	ENST00000372651		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000518872	ENST00000440226		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000518872	ENST00000308733		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000518872	ENST00000483091		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000307662	ENST00000427410		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000307662	ENST00000447388		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000307662	ENST00000425457		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000307662	ENST00000456393		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000307662	ENST00000372654		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000307662	ENST00000372653		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000307662	ENST00000372652		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000307662	ENST00000372651		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000307662	ENST00000440226		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000307662	ENST00000308733		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000307662	ENST00000483091		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000519664	ENST00000427410		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000519664	ENST00000447388		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000519664	ENST00000425457		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000519664	ENST00000456393		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-3CDS	ENST00000519664	ENST00000372654		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000519664	ENST00000372653		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000519664	ENST00000372652		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000519664	ENST00000372651		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000519664	ENST00000440226		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000519664	ENST00000308733		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
intron-intron	ENST00000519664	ENST00000483091		TCGA	LD	OV	TCGA-09-2054-01A	SYNPO	chr5	150004469	+	NFYC	chr1	41228560	+
5CDS-3UTR	ENST00000270538	ENST00000585548		TCGA	LD	OV	TCGA-09-2054-01A	TIMM44	chr19	8008492	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000270538	ENST00000317060		TCGA	LD	OV	TCGA-09-2054-01A	TIMM44	chr19	8008492	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000598968	ENST00000585548		TCGA	LD	OV	TCGA-09-2054-01A	TIMM44	chr19	8008492	-	DAND5	chr19	13084203	+
intron-3UTR	ENST00000598968	ENST00000317060		TCGA	LD	OV	TCGA-09-2054-01A	TIMM44	chr19	8008492	-	DAND5	chr19	13084203	+
5UTR-3CDS	ENST00000536254	ENST00000316939		TCGA	LD	OV	TCGA-09-2054-01A	ZNF567	chr19	37180399	+	GADD45GIP1	chr19	13065340	-
5UTR-3CDS	ENST00000360729	ENST00000316939		TCGA	LD	OV	TCGA-09-2054-01A	ZNF567	chr19	37180399	+	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000588311	ENST00000316939		TCGA	LD	OV	TCGA-09-2054-01A	ZNF567	chr19	37180399	+	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000585696	ENST00000316939		TCGA	LD	OV	TCGA-09-2054-01A	ZNF567	chr19	37180399	+	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000392163	ENST00000316939		TCGA	LD	OV	TCGA-09-2054-01A	ZNF567	chr19	37180399	+	GADD45GIP1	chr19	13065340	-
Frame-shit	ENST00000550760	ENST00000249344		TCGA	LD	OV	TCGA-09-2054-01A	ZNF727	chr7	63529987	+	STRIP2	chr7	129079863	+
Frame-shit	ENST00000550760	ENST00000435494		TCGA	LD	OV	TCGA-09-2054-01A	ZNF727	chr7	63529987	+	STRIP2	chr7	129079863	+
5UTR-3CDS	ENST00000378330	ENST00000355528		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-3CDS	ENST00000378330	ENST00000397466		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-3CDS	ENST00000378330	ENST00000539345		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-intron	ENST00000378330	ENST00000576691		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-3CDS	ENST00000301030	ENST00000355528		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-3CDS	ENST00000301030	ENST00000397466		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-3CDS	ENST00000301030	ENST00000539345		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
5UTR-intron	ENST00000301030	ENST00000576691		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000563291	ENST00000355528		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000563291	ENST00000397466		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000563291	ENST00000539345		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-intron	ENST00000563291	ENST00000576691		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000567736	ENST00000355528		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000567736	ENST00000397466		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000567736	ENST00000539345		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-intron	ENST00000567736	ENST00000576691		TCGA	LD	OV	TCGA-09-2056-01B	ANKRD11	chr16	89484692	-	TBCD	chr17	80828100	+
intron-3CDS	ENST00000397901	ENST00000561976		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000397901	ENST00000389386		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-intron	ENST00000397901	ENST00000565452		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000253475	ENST00000561976		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000253475	ENST00000389386		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-intron	ENST00000253475	ENST00000565452		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000535997	ENST00000561976		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000535997	ENST00000389386		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-intron	ENST00000535997	ENST00000565452		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000550102	ENST00000561976		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000550102	ENST00000389386		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-intron	ENST00000550102	ENST00000565452		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000547614	ENST00000561976		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-3CDS	ENST00000547614	ENST00000389386		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
intron-intron	ENST00000547614	ENST00000565452		TCGA	LD	OV	TCGA-09-2056-01B	CHMP1A	chr16	89717670	-	VPS9D1	chr16	89775364	-
5CDS-5UTR	ENST00000328024	ENST00000591607		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000328024	ENST00000591747		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000328024	ENST00000270257		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-intron	ENST00000328024	ENST00000592351		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000328024	ENST00000391951		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5UTR-5UTR	ENST00000601897	ENST00000591607		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5UTR-5UTR	ENST00000601897	ENST00000591747		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5UTR-5UTR	ENST00000601897	ENST00000270257		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5UTR-intron	ENST00000601897	ENST00000592351		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5UTR-5UTR	ENST00000601897	ENST00000391951		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000594216	ENST00000591607		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000594216	ENST00000591747		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000594216	ENST00000270257		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-intron	ENST00000594216	ENST00000592351		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
5CDS-5UTR	ENST00000594216	ENST00000391951		TCGA	LD	OV	TCGA-10-0926-01A	RAB11B	chr19	8455340	+	GEMIN7	chr19	45593365	+
In-frame	ENST00000598441	ENST00000270538		TCGA	LD	OV	TCGA-10-0926-01A	SNRNP70	chr19	49589818	+	TIMM44	chr19	8006082	-
5CDS-intron	ENST00000598441	ENST00000598968		TCGA	LD	OV	TCGA-10-0926-01A	SNRNP70	chr19	49589818	+	TIMM44	chr19	8006082	-
In-frame	ENST00000221448	ENST00000270538		TCGA	LD	OV	TCGA-10-0926-01A	SNRNP70	chr19	49589818	+	TIMM44	chr19	8006082	-
5CDS-intron	ENST00000221448	ENST00000598968		TCGA	LD	OV	TCGA-10-0926-01A	SNRNP70	chr19	49589818	+	TIMM44	chr19	8006082	-
5UTR-5UTR	ENST00000523149	ENST00000301908		TCGA	LD	OV	TCGA-10-0927-01A	EXTL3	chr8	28480327	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000523149	ENST00000522209		TCGA	LD	OV	TCGA-10-0927-01A	EXTL3	chr8	28480327	+	PNOC	chr8	28186652	+
intron-5UTR	ENST00000220562	ENST00000301908		TCGA	LD	OV	TCGA-10-0927-01A	EXTL3	chr8	28480327	+	PNOC	chr8	28186652	+
intron-intron	ENST00000220562	ENST00000522209		TCGA	LD	OV	TCGA-10-0927-01A	EXTL3	chr8	28480327	+	PNOC	chr8	28186652	+
intron-5UTR	ENST00000519886	ENST00000301908		TCGA	LD	OV	TCGA-10-0927-01A	EXTL3	chr8	28480327	+	PNOC	chr8	28186652	+
intron-intron	ENST00000519886	ENST00000522209		TCGA	LD	OV	TCGA-10-0927-01A	EXTL3	chr8	28480327	+	PNOC	chr8	28186652	+
5UTR-3CDS	ENST00000599470	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-intron	ENST00000599470	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-3CDS	ENST00000321944	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-intron	ENST00000321944	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-3CDS	ENST00000358301	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-intron	ENST00000358301	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
3UTR-3CDS	ENST00000597766	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
3UTR-intron	ENST00000597766	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-3CDS	ENST00000593690	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-intron	ENST00000593690	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-3CDS	ENST00000599386	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5UTR-intron	ENST00000599386	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
intron-3CDS	ENST00000435673	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
intron-intron	ENST00000435673	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
intron-3CDS	ENST00000360442	ENST00000593829		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
intron-intron	ENST00000360442	ENST00000252816		TCGA	LD	OV	TCGA-10-0927-01A	PAK4	chr19	39616559	+	LSM4	chr19	18426875	-
5CDS-5UTR	ENST00000509018	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
5CDS-5UTR	ENST00000307984	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
5CDS-5UTR	ENST00000507093	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
5CDS-5UTR	ENST00000296859	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
intron-5UTR	ENST00000512052	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
5CDS-5UTR	ENST00000308008	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
5CDS-5UTR	ENST00000510071	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
intron-5UTR	ENST00000503398	ENST00000230732		TCGA	LD	OV	TCGA-10-0927-01A	RAPGEF6	chr5	130970655	-	POU4F3	chr5	145718666	+
In-frame	ENST00000271277	ENST00000378654		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000271277	ENST00000544100		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000271277	ENST00000534875		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000271277	ENST00000543413		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000271277	ENST00000497202		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
intron-3CDS	ENST00000607039	ENST00000378654		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
intron-5UTR	ENST00000607039	ENST00000544100		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
intron-5UTR	ENST00000607039	ENST00000534875		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
intron-5UTR	ENST00000607039	ENST00000543413		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
intron-5UTR	ENST00000607039	ENST00000497202		TCGA	LD	OV	TCGA-10-0928-01A	CTTNBP2NL	chr1	112958886	+	SUCLA2	chr13	48571158	-
5UTR-5UTR	ENST00000491421	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5UTR-5UTR	ENST00000491421	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000491421	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000491421	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000491421	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5UTR-intron	ENST00000491421	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000375661	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000375661	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000375661	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000375661	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000375661	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-intron	ENST00000375661	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000483453	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000483453	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000483453	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000483453	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000483453	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000483453	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000432122	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000432122	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000432122	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000432122	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000432122	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000432122	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000474526	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000474526	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474526	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474526	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474526	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000474526	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000455705	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000455705	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000455705	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000455705	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000455705	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000455705	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000467102	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000467102	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000467102	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000467102	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000467102	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000467102	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000424975	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000424975	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424975	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424975	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424975	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000424975	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000493146	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000493146	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000493146	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000493146	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000493146	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000493146	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000434125	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000434125	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000434125	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000434125	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000434125	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000434125	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000477511	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000477511	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000477511	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000477511	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000477511	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000477511	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000383391	ENST00000375654		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-5UTR	ENST00000383391	ENST00000417199		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000383391	ENST00000426095		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000383391	ENST00000456772		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000383391	ENST00000417601		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
intron-intron	ENST00000383391	ENST00000383390		TCGA	LD	OV	TCGA-10-0928-01A	LSM2	chr6	31773852	-	HSPA1L	chr6	31779762	-
5CDS-5UTR	ENST00000444716	ENST00000368708		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000444716	ENST00000487430		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000444716	ENST00000497140		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000444716	ENST00000368710		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000444716	ENST00000368709		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000444716	ENST00000368707		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000302541	ENST00000368708		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000302541	ENST00000487430		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000302541	ENST00000497140		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000302541	ENST00000368710		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000302541	ENST00000368709		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000302541	ENST00000368707		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000425621	ENST00000368708		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000425621	ENST00000487430		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000425621	ENST00000497140		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000425621	ENST00000368710		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000425621	ENST00000368709		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000425621	ENST00000368707		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000396217	ENST00000368708		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000396217	ENST00000487430		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-intron	ENST00000396217	ENST00000497140		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000396217	ENST00000368710		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000396217	ENST00000368709		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
5CDS-5UTR	ENST00000396217	ENST00000368707		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000459828	ENST00000368708		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000459828	ENST00000487430		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-intron	ENST00000459828	ENST00000497140		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000459828	ENST00000368710		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000459828	ENST00000368709		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000459828	ENST00000368707		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000539167	ENST00000368708		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000539167	ENST00000487430		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-intron	ENST00000539167	ENST00000497140		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000539167	ENST00000368710		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000539167	ENST00000368709		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
intron-5UTR	ENST00000539167	ENST00000368707		TCGA	LD	OV	TCGA-10-0928-01A	MYRIP	chr3	40085762	+	S100A2	chr1	153536363	-
Frame-shit	ENST00000348715	ENST00000379717		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000348715	ENST00000355467		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-3UTR	ENST00000348715	ENST00000494548		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000348715	ENST00000556601		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000348715	ENST00000416005		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000348715	ENST00000413371		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000397647	ENST00000379717		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000397647	ENST00000355467		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-3UTR	ENST00000397647	ENST00000494548		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000397647	ENST00000556601		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000397647	ENST00000416005		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000397647	ENST00000413371		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000263335	ENST00000379717		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000263335	ENST00000355467		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-3UTR	ENST00000263335	ENST00000494548		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000263335	ENST00000556601		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000263335	ENST00000416005		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000263335	ENST00000413371		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000429538	ENST00000379717		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000429538	ENST00000355467		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-3UTR	ENST00000429538	ENST00000494548		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000429538	ENST00000556601		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000429538	ENST00000416005		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000429538	ENST00000413371		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000263334	ENST00000379717		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000263334	ENST00000355467		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-3UTR	ENST00000263334	ENST00000494548		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000263334	ENST00000556601		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000263334	ENST00000416005		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
5CDS-5UTR	ENST00000263334	ENST00000413371		TCGA	LD	OV	TCGA-10-0928-01A	PAX8	chr2	114035947	-	ZNF512	chr2	27820934	+
Frame-shit	ENST00000418331	ENST00000344293		TCGA	LD	OV	TCGA-10-0928-01A	PTPRJ	chr11	48177671	+	TAF3	chr10	8005883	+
intron-3CDS	ENST00000440289	ENST00000344293		TCGA	LD	OV	TCGA-10-0928-01A	PTPRJ	chr11	48177671	+	TAF3	chr10	8005883	+
intron-3CDS	ENST00000526550	ENST00000344293		TCGA	LD	OV	TCGA-10-0928-01A	PTPRJ	chr11	48177671	+	TAF3	chr10	8005883	+
5UTR-3CDS	ENST00000393328	ENST00000240333		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000393328	ENST00000415270		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000393331	ENST00000240333		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000393331	ENST00000415270		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000347630	ENST00000240333		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000347630	ENST00000415270		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000504102	ENST00000240333		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000504102	ENST00000415270		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
intron-3CDS	ENST00000503676	ENST00000240333		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
intron-3CDS	ENST00000503676	ENST00000415270		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000513080	ENST00000240333		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
5UTR-3CDS	ENST00000513080	ENST00000415270		TCGA	LD	OV	TCGA-10-0928-01A	SPOP	chr17	47755295	-	SLC35B1	chr17	47783696	-
In-frame	ENST00000378654	ENST00000271277		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
5CDS-intron	ENST00000378654	ENST00000607039		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
5UTR-3CDS	ENST00000544100	ENST00000271277		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
5UTR-intron	ENST00000544100	ENST00000607039		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
intron-3CDS	ENST00000534875	ENST00000271277		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
intron-intron	ENST00000534875	ENST00000607039		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
intron-3CDS	ENST00000543413	ENST00000271277		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
intron-intron	ENST00000543413	ENST00000607039		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
5UTR-3CDS	ENST00000497202	ENST00000271277		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
5UTR-intron	ENST00000497202	ENST00000607039		TCGA	LD	OV	TCGA-10-0928-01A	SUCLA2	chr13	48575316	-	CTTNBP2NL	chr1	112991564	+
intron-5UTR	ENST00000337132	ENST00000303577		TCGA	LD	OV	TCGA-10-0934-01A	NECAP2	chr1	16783439	+	PCBP1	chr2	70314769	+
intron-5UTR	ENST00000504551	ENST00000303577		TCGA	LD	OV	TCGA-10-0934-01A	NECAP2	chr1	16783439	+	PCBP1	chr2	70314769	+
intron-5UTR	ENST00000457722	ENST00000303577		TCGA	LD	OV	TCGA-10-0934-01A	NECAP2	chr1	16783439	+	PCBP1	chr2	70314769	+
intron-5UTR	ENST00000406746	ENST00000303577		TCGA	LD	OV	TCGA-10-0934-01A	NECAP2	chr1	16783439	+	PCBP1	chr2	70314769	+
intron-5UTR	ENST00000443980	ENST00000303577		TCGA	LD	OV	TCGA-10-0934-01A	NECAP2	chr1	16783439	+	PCBP1	chr2	70314769	+
intron-5UTR	ENST00000486390	ENST00000303577		TCGA	LD	OV	TCGA-10-0934-01A	NECAP2	chr1	16783439	+	PCBP1	chr2	70314769	+
intron-3CDS	ENST00000408388	ENST00000394026		TCGA	LD	OV	TCGA-10-0934-01A	PVT1	chr8	128806980	+	COQ6	chr14	74420138	+
intron-5UTR	ENST00000408388	ENST00000238709		TCGA	LD	OV	TCGA-10-0934-01A	PVT1	chr8	128806980	+	COQ6	chr14	74420138	+
intron-5UTR	ENST00000408388	ENST00000334571		TCGA	LD	OV	TCGA-10-0934-01A	PVT1	chr8	128806980	+	COQ6	chr14	74420138	+
intron-5UTR	ENST00000408388	ENST00000554920		TCGA	LD	OV	TCGA-10-0934-01A	PVT1	chr8	128806980	+	COQ6	chr14	74420138	+
intron-3UTR	ENST00000408388	ENST00000555552		TCGA	LD	OV	TCGA-10-0934-01A	PVT1	chr8	128806980	+	COQ6	chr14	74420138	+
In-frame	ENST00000258098	ENST00000392415		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
In-frame	ENST00000258098	ENST00000410062		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
In-frame	ENST00000258098	ENST00000602710		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5CDS-3UTR	ENST00000258098	ENST00000602837		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5CDS-3UTR	ENST00000258098	ENST00000602959		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5CDS-intron	ENST00000258098	ENST00000602475		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5CDS-intron	ENST00000258098	ENST00000602632		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-3CDS	ENST00000493523	ENST00000392415		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-3CDS	ENST00000493523	ENST00000410062		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-3CDS	ENST00000493523	ENST00000602710		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-3UTR	ENST00000493523	ENST00000602837		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-3UTR	ENST00000493523	ENST00000602959		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-intron	ENST00000493523	ENST00000602475		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-intron	ENST00000493523	ENST00000602632		TCGA	LD	OV	TCGA-10-0934-01A	RAB11FIP5	chr2	73303121	-	UBE2E3	chr2	181925392	+
5UTR-3CDS	ENST00000514355	ENST00000505956		TCGA	LD	OV	TCGA-10-0934-01A	RPL32P3	chr3	129117851	-	EFCAB12	chr3	129140646	-
5UTR-3CDS	ENST00000514355	ENST00000326085		TCGA	LD	OV	TCGA-10-0934-01A	RPL32P3	chr3	129117851	-	EFCAB12	chr3	129140646	-
Frame-shit	ENST00000429711	ENST00000285018		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
5CDS-intron	ENST00000429711	ENST00000497808		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
Frame-shit	ENST00000396957	ENST00000285018		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
5CDS-intron	ENST00000396957	ENST00000497808		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
Frame-shit	ENST00000273223	ENST00000285018		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
5CDS-intron	ENST00000273223	ENST00000497808		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
Frame-shit	ENST00000435983	ENST00000285018		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
5CDS-intron	ENST00000435983	ENST00000497808		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
Frame-shit	ENST00000396953	ENST00000285018		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
5CDS-intron	ENST00000396953	ENST00000497808		TCGA	LD	OV	TCGA-10-0934-01A	RPL32	chr3	12880848	-	WNT7A	chr3	13896300	-
In-frame	ENST00000448841	ENST00000040584		TCGA	LD	OV	TCGA-10-0934-01A	WBP1L	chr10	104503864	+	HOXC8	chr12	54403382	+
intron-3CDS	ENST00000369889	ENST00000040584		TCGA	LD	OV	TCGA-10-0934-01A	WBP1L	chr10	104503864	+	HOXC8	chr12	54403382	+
5UTR-3CDS	ENST00000396113	ENST00000358791		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396113	ENST00000262591		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396113	ENST00000371608		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396113	ENST00000609336		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-intron	ENST00000396113	ENST00000485049		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000286687	ENST00000358791		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000286687	ENST00000262591		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000286687	ENST00000371608		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000286687	ENST00000609336		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-intron	ENST00000286687	ENST00000485049		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396111	ENST00000358791		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396111	ENST00000262591		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396111	ENST00000371608		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-3CDS	ENST00000396111	ENST00000609336		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
5UTR-intron	ENST00000396111	ENST00000485049		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000521840	ENST00000358791		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000521840	ENST00000262591		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000521840	ENST00000371608		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000521840	ENST00000609336		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-intron	ENST00000521840	ENST00000485049		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000542894	ENST00000358791		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000542894	ENST00000262591		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000542894	ENST00000371608		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000542894	ENST00000609336		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-intron	ENST00000542894	ENST00000485049		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000396124	ENST00000358791		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000396124	ENST00000262591		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000396124	ENST00000371608		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000396124	ENST00000609336		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-intron	ENST00000396124	ENST00000485049		TCGA	LD	OV	TCGA-10-0937-01A	NDUFAF6	chr8	95970407	+	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000429429	ENST00000303277		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
intron-3CDS	ENST00000429429	ENST00000382936		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
intron-3CDS	ENST00000429429	ENST00000536901		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000489418	ENST00000303277		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000489418	ENST00000382936		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000489418	ENST00000536901		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000318386	ENST00000303277		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000318386	ENST00000382936		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000318386	ENST00000536901		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000488267	ENST00000303277		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000488267	ENST00000382936		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
Frame-shit	ENST00000488267	ENST00000536901		TCGA	LD	OV	TCGA-10-0937-01A	SLBP	chr4	1713601	-	TMEM129	chr4	1720353	-
5CDS-5UTR	ENST00000416247	ENST00000459937		TCGA	LD	OV	TCGA-10-0937-01A	SMIM13	chr6	11094622	+	C7orf49	chr7	134779334	-
5CDS-intron	ENST00000416247	ENST00000424142		TCGA	LD	OV	TCGA-10-0937-01A	SMIM13	chr6	11094622	+	C7orf49	chr7	134779334	-
5CDS-intron	ENST00000416247	ENST00000393114		TCGA	LD	OV	TCGA-10-0937-01A	SMIM13	chr6	11094622	+	C7orf49	chr7	134779334	-
5CDS-intron	ENST00000416247	ENST00000430372		TCGA	LD	OV	TCGA-10-0937-01A	SMIM13	chr6	11094622	+	C7orf49	chr7	134779334	-
5CDS-intron	ENST00000416247	ENST00000483029		TCGA	LD	OV	TCGA-10-0937-01A	SMIM13	chr6	11094622	+	C7orf49	chr7	134779334	-
5UTR-5UTR	ENST00000311172	ENST00000265686		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-intron	ENST00000311172	ENST00000532635		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-intron	ENST00000311172	ENST00000530802		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-5UTR	ENST00000409314	ENST00000265686		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-intron	ENST00000409314	ENST00000532635		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-intron	ENST00000409314	ENST00000530802		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-5UTR	ENST00000409418	ENST00000265686		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-intron	ENST00000409418	ENST00000532635		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-intron	ENST00000409418	ENST00000530802		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-5UTR	ENST00000458644	ENST00000265686		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-intron	ENST00000458644	ENST00000532635		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-intron	ENST00000458644	ENST00000530802		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-5UTR	ENST00000409853	ENST00000265686		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-intron	ENST00000409853	ENST00000532635		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5UTR-intron	ENST00000409853	ENST00000530802		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
intron-5UTR	ENST00000409263	ENST00000265686		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
intron-intron	ENST00000409263	ENST00000532635		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
intron-intron	ENST00000409263	ENST00000530802		TCGA	LD	OV	TCGA-10-0938-01A	FCHSD2	chr11	72794741	-	TCIRG1	chr11	67806503	+
5CDS-intron	ENST00000310614	ENST00000265689		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5CDS-intron	ENST00000310614	ENST00000533728		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5CDS-intron	ENST00000310614	ENST00000356135		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5UTR-intron	ENST00000535529	ENST00000265689		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5UTR-intron	ENST00000535529	ENST00000533728		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5UTR-intron	ENST00000535529	ENST00000356135		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5UTR-intron	ENST00000411840	ENST00000265689		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5UTR-intron	ENST00000411840	ENST00000533728		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5UTR-intron	ENST00000411840	ENST00000356135		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
intron-intron	ENST00000398483	ENST00000265689		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
intron-intron	ENST00000398483	ENST00000533728		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
intron-intron	ENST00000398483	ENST00000356135		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5CDS-intron	ENST00000542303	ENST00000265689		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5CDS-intron	ENST00000542303	ENST00000533728		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
5CDS-intron	ENST00000542303	ENST00000356135		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
intron-intron	ENST00000314282	ENST00000265689		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
intron-intron	ENST00000314282	ENST00000533728		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
intron-intron	ENST00000314282	ENST00000356135		TCGA	LD	OV	TCGA-10-0938-01A	MRPL48	chr11	73519395	+	CHKA	chr11	67857347	-
Frame-shit	ENST00000323851	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000323851	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000323851	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000323851	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000354944	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000354944	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000354944	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000354944	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000521414	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000521414	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000521414	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000521414	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
5UTR-3CDS	ENST00000537882	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
5UTR-3CDS	ENST00000537882	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
5UTR-3CDS	ENST00000537882	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
5UTR-3CDS	ENST00000537882	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000414097	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000414097	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000414097	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
In-frame	ENST00000414097	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518176	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518176	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518176	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518176	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000522476	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000522476	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000522476	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000522476	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518066	ENST00000443356		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518066	ENST00000603859		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518066	ENST00000254627		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
intron-3CDS	ENST00000518066	ENST00000262283		TCGA	LD	OV	TCGA-10-0938-01A	NDRG1	chr8	134292474	-	OC90	chr8	133037022	-
Frame-shit	ENST00000260197	ENST00000527185		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
Frame-shit	ENST00000260197	ENST00000528682		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
Frame-shit	ENST00000260197	ENST00000524871		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
5CDS-intron	ENST00000260197	ENST00000418526		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
5CDS-intron	ENST00000260197	ENST00000279463		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
5CDS-intron	ENST00000260197	ENST00000524560		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
3UTR-3CDS	ENST00000532451	ENST00000527185		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
3UTR-3CDS	ENST00000532451	ENST00000528682		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
3UTR-3CDS	ENST00000532451	ENST00000524871		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
3UTR-intron	ENST00000532451	ENST00000418526		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
3UTR-intron	ENST00000532451	ENST00000279463		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
3UTR-intron	ENST00000532451	ENST00000524560		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000525532	ENST00000527185		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000525532	ENST00000528682		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000525532	ENST00000524871		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000525532	ENST00000418526		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000525532	ENST00000279463		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000525532	ENST00000524560		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000532694	ENST00000527185		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000532694	ENST00000528682		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000532694	ENST00000524871		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000532694	ENST00000418526		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000532694	ENST00000279463		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000532694	ENST00000524560		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000534286	ENST00000527185		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000534286	ENST00000528682		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000534286	ENST00000524871		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000534286	ENST00000418526		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000534286	ENST00000279463		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000534286	ENST00000524560		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000527934	ENST00000527185		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000527934	ENST00000528682		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-3CDS	ENST00000527934	ENST00000524871		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000527934	ENST00000418526		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000527934	ENST00000279463		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
intron-intron	ENST00000527934	ENST00000524560		TCGA	LD	OV	TCGA-10-0938-01A	SORL1	chr11	121393698	+	CNTN5	chr11	99690275	+
5UTR-3CDS	ENST00000560371	ENST00000333625		TCGA	LD	OV	TCGA-13-0724-01A	TRAF3	chr14	103244012	+	IFNL1	chr19	39787445	+
5UTR-3CDS	ENST00000347662	ENST00000333625		TCGA	LD	OV	TCGA-13-0724-01A	TRAF3	chr14	103244012	+	IFNL1	chr19	39787445	+
5UTR-3CDS	ENST00000392745	ENST00000333625		TCGA	LD	OV	TCGA-13-0724-01A	TRAF3	chr14	103244012	+	IFNL1	chr19	39787445	+
5UTR-3CDS	ENST00000539721	ENST00000333625		TCGA	LD	OV	TCGA-13-0724-01A	TRAF3	chr14	103244012	+	IFNL1	chr19	39787445	+
intron-3CDS	ENST00000351691	ENST00000333625		TCGA	LD	OV	TCGA-13-0724-01A	TRAF3	chr14	103244012	+	IFNL1	chr19	39787445	+
5CDS-5UTR	ENST00000322954	ENST00000447274		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000322954	ENST00000511455		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000322954	ENST00000308440		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000322954	ENST00000514166		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000322954	ENST00000515828		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000322954	ENST00000504236		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000539319	ENST00000447274		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000539319	ENST00000511455		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000539319	ENST00000308440		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000539319	ENST00000514166		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000539319	ENST00000515828		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000539319	ENST00000504236		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000379983	ENST00000447274		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000379983	ENST00000511455		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000379983	ENST00000308440		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000379983	ENST00000514166		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000379983	ENST00000515828		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000379983	ENST00000504236		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000560441	ENST00000447274		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000560441	ENST00000511455		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000560441	ENST00000308440		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-5UTR	ENST00000560441	ENST00000514166		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000560441	ENST00000515828		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
5CDS-intron	ENST00000560441	ENST00000504236		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
intron-5UTR	ENST00000559183	ENST00000447274		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
intron-5UTR	ENST00000559183	ENST00000511455		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
intron-5UTR	ENST00000559183	ENST00000308440		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
intron-5UTR	ENST00000559183	ENST00000514166		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
intron-intron	ENST00000559183	ENST00000515828		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
intron-intron	ENST00000559183	ENST00000504236		TCGA	LD	OV	TCGA-13-0724-01A	UACA	chr15	70987356	-	ANKRD13D	chr11	67057549	+
Frame-shit	ENST00000255608	ENST00000250916		TCGA	LD	OV	TCGA-13-0726-01A	BTBD2	chr19	2015296	-	KLF16	chr19	1854759	-
5CDS-5UTR	ENST00000255608	ENST00000592313		TCGA	LD	OV	TCGA-13-0726-01A	BTBD2	chr19	2015296	-	KLF16	chr19	1854759	-
intron-3CDS	ENST00000590646	ENST00000250916		TCGA	LD	OV	TCGA-13-0726-01A	BTBD2	chr19	2015296	-	KLF16	chr19	1854759	-
intron-5UTR	ENST00000590646	ENST00000592313		TCGA	LD	OV	TCGA-13-0726-01A	BTBD2	chr19	2015296	-	KLF16	chr19	1854759	-
5UTR-3CDS	ENST00000400227	ENST00000438552		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000400227	ENST00000381342		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000400227	ENST00000339610		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000349736	ENST00000438552		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000349736	ENST00000381342		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000349736	ENST00000339610		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000217244	ENST00000438552		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000217244	ENST00000381342		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000217244	ENST00000339610		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000400217	ENST00000438552		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-3CDS	ENST00000400217	ENST00000381342		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
5UTR-5UTR	ENST00000400217	ENST00000339610		TCGA	LD	OV	TCGA-13-0727-01A	CSNK2A1	chr20	524316	-	SNRPB	chr20	2448404	-
intron-3CDS	ENST00000377452	ENST00000262544		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000377452	ENST00000336714		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000377452	ENST00000377475		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000377452	ENST00000377465		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-intron	ENST00000377452	ENST00000494645		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000494921	ENST00000262544		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000494921	ENST00000336714		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000494921	ENST00000377475		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-3CDS	ENST00000494921	ENST00000377465		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
intron-intron	ENST00000494921	ENST00000494645		TCGA	LD	OV	TCGA-13-0727-01A	DTD1	chr20	18548240	+	SEC23B	chr20	18541295	+
Frame-shit	ENST00000381470	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000381470	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000381470	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000381470	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000381470	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000381470	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000432128	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000432128	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000432128	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000432128	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000432128	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000432128	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000443491	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000443491	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000443491	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000443491	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000443491	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000443491	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000517600	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000517600	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000517600	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000517600	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000517600	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000517600	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000523782	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000523782	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000523782	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000523782	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000523782	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000523782	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000265800	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000265800	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000265800	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000265800	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000265800	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000265800	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000415253	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000415253	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000415253	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000415253	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000415253	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000415253	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000358242	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000358242	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000358242	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000358242	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000358242	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000358242	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000523266	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000523266	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000523266	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000523266	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000523266	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000523266	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000519907	ENST00000521157		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000519907	ENST00000397940		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
Frame-shit	ENST00000519907	ENST00000518119		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000519907	ENST00000520180		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000519907	ENST00000289820		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
5CDS-3UTR	ENST00000519907	ENST00000381530		TCGA	LD	OV	TCGA-13-0730-01A	DMTN	chr8	21931346	+	NPM2	chr8	21890641	+
In-frame	ENST00000462138	ENST00000424459		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000462138	ENST00000514387		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000462138	ENST00000506184		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000462138	ENST00000454432		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000462138	ENST00000511209		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000462138	ENST00000264779		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000462138	ENST00000538707		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000424459		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000514387		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000506184		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000454432		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000511209		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000264779		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000423525	ENST00000538707		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000424459		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000514387		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000506184		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000454432		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000511209		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000264779		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
intron-3CDS	ENST00000461139	ENST00000538707		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000424459		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000514387		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000506184		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000454432		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000511209		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000264779		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000423516	ENST00000538707		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000424459		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000514387		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000506184		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000454432		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000511209		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000264779		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
Frame-shit	ENST00000296289	ENST00000538707		TCGA	LD	OV	TCGA-13-0762-01A	TKT	chr3	53274267	-	GPBP1	chr5	56557007	+
In-frame	ENST00000315183	ENST00000399069		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
In-frame	ENST00000315183	ENST00000380966		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
5CDS-intron	ENST00000315183	ENST00000572869		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
3UTR-3CDS	ENST00000562829	ENST00000399069		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
3UTR-3CDS	ENST00000562829	ENST00000380966		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
3UTR-intron	ENST00000562829	ENST00000572869		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
In-frame	ENST00000395799	ENST00000399069		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
In-frame	ENST00000395799	ENST00000380966		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
5CDS-intron	ENST00000395799	ENST00000572869		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
intron-3CDS	ENST00000432286	ENST00000399069		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
intron-3CDS	ENST00000432286	ENST00000380966		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
intron-intron	ENST00000432286	ENST00000572869		TCGA	LD	OV	TCGA-13-0765-01A	TNRC6A	chr16	24741621	+	LCMT1	chr16	25139796	+
5UTR-3CDS	ENST00000354532	ENST00000221972		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
5UTR-3CDS	ENST00000354532	ENST00000444740		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
5UTR-3CDS	ENST00000599846	ENST00000221972		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
5UTR-3CDS	ENST00000599846	ENST00000444740		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
3UTR-3CDS	ENST00000596957	ENST00000221972		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
3UTR-3CDS	ENST00000596957	ENST00000444740		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
5UTR-3CDS	ENST00000347545	ENST00000221972		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
5UTR-3CDS	ENST00000347545	ENST00000444740		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
intron-3CDS	ENST00000378152	ENST00000221972		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
intron-3CDS	ENST00000378152	ENST00000444740		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
intron-3CDS	ENST00000337665	ENST00000221972		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
intron-3CDS	ENST00000337665	ENST00000444740		TCGA	LD	OV	TCGA-13-0766-01A	ARHGEF1	chr19	42387356	+	CD79A	chr19	42383060	+
In-frame	ENST00000357156	ENST00000374864		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000357156	ENST00000535650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000357156	ENST00000262650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
5CDS-intron	ENST00000357156	ENST00000483727		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
3UTR-3CDS	ENST00000480759	ENST00000374864		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
3UTR-3CDS	ENST00000480759	ENST00000535650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
3UTR-3CDS	ENST00000480759	ENST00000262650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
3UTR-intron	ENST00000480759	ENST00000483727		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000417166	ENST00000374864		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000417166	ENST00000535650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000417166	ENST00000262650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
5CDS-intron	ENST00000417166	ENST00000483727		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
intron-3CDS	ENST00000300469	ENST00000374864		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
intron-3CDS	ENST00000300469	ENST00000535650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
intron-3CDS	ENST00000300469	ENST00000262650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
intron-intron	ENST00000300469	ENST00000483727		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000374846	ENST00000374864		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000374846	ENST00000535650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000374846	ENST00000262650		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
5CDS-intron	ENST00000374846	ENST00000483727		TCGA	LD	OV	TCGA-13-0766-01A	DYNLRB1	chr20	33122599	+	ITCH	chr20	33092136	+
In-frame	ENST00000370790	ENST00000308158		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-5UTR	ENST00000370790	ENST00000481811		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-intron	ENST00000370790	ENST00000476170		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
In-frame	ENST00000343004	ENST00000308158		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-5UTR	ENST00000343004	ENST00000481811		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-intron	ENST00000343004	ENST00000476170		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
In-frame	ENST00000298090	ENST00000308158		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-5UTR	ENST00000298090	ENST00000481811		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-intron	ENST00000298090	ENST00000476170		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
In-frame	ENST00000486347	ENST00000308158		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-5UTR	ENST00000486347	ENST00000481811		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5CDS-intron	ENST00000486347	ENST00000476170		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5UTR-3CDS	ENST00000493333	ENST00000308158		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5UTR-5UTR	ENST00000493333	ENST00000481811		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
5UTR-intron	ENST00000493333	ENST00000476170		TCGA	LD	OV	TCGA-13-0766-01A	FAM122B	chrX	133923253	-	PHYKPL	chr5	177641886	-
In-frame	ENST00000337137	ENST00000381031		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
Frame-shit	ENST00000337137	ENST00000445282		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
In-frame	ENST00000380995	ENST00000381031		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
Frame-shit	ENST00000380995	ENST00000445282		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000407381	ENST00000381031		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000407381	ENST00000445282		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000355704	ENST00000381031		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000355704	ENST00000445282		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000472791	ENST00000381031		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
intron-3CDS	ENST00000472791	ENST00000445282		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
In-frame	ENST00000406733	ENST00000381031		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
Frame-shit	ENST00000406733	ENST00000445282		TCGA	LD	OV	TCGA-13-0766-01A	TBC1D22A	chr22	47193517	+	TTC38	chr22	46688688	+
Frame-shit	ENST00000216194	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
In-frame	ENST00000216194	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
Frame-shit	ENST00000216194	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000216194	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000216194	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000216194	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
Frame-shit	ENST00000454266	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
In-frame	ENST00000454266	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
Frame-shit	ENST00000454266	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000454266	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000454266	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000454266	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
Frame-shit	ENST00000342312	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
In-frame	ENST00000342312	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
Frame-shit	ENST00000342312	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000342312	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000342312	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5CDS-intron	ENST00000342312	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
intron-3CDS	ENST00000480775	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
intron-3CDS	ENST00000480775	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
intron-3CDS	ENST00000480775	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
intron-intron	ENST00000480775	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
intron-intron	ENST00000480775	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
intron-intron	ENST00000480775	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ADSL	chr22	40750331	+	MKL1	chr22	40807911	-
5UTR-3CDS	ENST00000394071	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
5UTR-3CDS	ENST00000394071	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
5UTR-3CDS	ENST00000394071	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
5UTR-intron	ENST00000394071	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
5UTR-intron	ENST00000394071	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
5UTR-intron	ENST00000394071	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-3CDS	ENST00000286523	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-3CDS	ENST00000286523	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-3CDS	ENST00000286523	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-intron	ENST00000286523	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-intron	ENST00000286523	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-intron	ENST00000286523	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-3CDS	ENST00000486739	ENST00000355630		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-3CDS	ENST00000486739	ENST00000396617		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-3CDS	ENST00000486739	ENST00000402042		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-intron	ENST00000486739	ENST00000466278		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-intron	ENST00000486739	ENST00000407029		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
intron-intron	ENST00000486739	ENST00000402630		TCGA	LD	OV	TCGA-13-0768-01A	ELMSAN1	chr14	74253805	-	MKL1	chr22	40807911	-
5UTR-5UTR	ENST00000355630	ENST00000249016		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000355630	ENST00000381433		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000355630	ENST00000498400		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-5UTR	ENST00000396617	ENST00000249016		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000396617	ENST00000381433		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000396617	ENST00000498400		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-5UTR	ENST00000402042	ENST00000249016		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000402042	ENST00000381433		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000402042	ENST00000498400		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-5UTR	ENST00000466278	ENST00000249016		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000466278	ENST00000381433		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5UTR-intron	ENST00000466278	ENST00000498400		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
intron-5UTR	ENST00000407029	ENST00000249016		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
intron-intron	ENST00000407029	ENST00000381433		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
intron-intron	ENST00000407029	ENST00000498400		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
intron-5UTR	ENST00000402630	ENST00000249016		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
intron-intron	ENST00000402630	ENST00000381433		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
intron-intron	ENST00000402630	ENST00000498400		TCGA	LD	OV	TCGA-13-0768-01A	MKL1	chr22	40990678	-	MCHR1	chr22	41075221	+
5CDS-intron	ENST00000360605	ENST00000356333		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000360605	ENST00000316310		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000360605	ENST00000330025		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000360605	ENST00000512364		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000360605	ENST00000414076		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000360605	ENST00000493931		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000542441	ENST00000356333		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000542441	ENST00000316310		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000542441	ENST00000330025		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000542441	ENST00000512364		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000542441	ENST00000414076		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000542441	ENST00000493931		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000392271	ENST00000356333		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000392271	ENST00000316310		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000392271	ENST00000330025		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000392271	ENST00000512364		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000392271	ENST00000414076		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000392271	ENST00000493931		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000312051	ENST00000356333		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000312051	ENST00000316310		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000312051	ENST00000330025		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000312051	ENST00000512364		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000312051	ENST00000414076		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
5CDS-intron	ENST00000312051	ENST00000493931		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
intron-intron	ENST00000574176	ENST00000356333		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
intron-intron	ENST00000574176	ENST00000316310		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
intron-intron	ENST00000574176	ENST00000330025		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
intron-intron	ENST00000574176	ENST00000512364		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
intron-intron	ENST00000574176	ENST00000414076		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
intron-intron	ENST00000574176	ENST00000493931		TCGA	LD	OV	TCGA-13-0768-01A	URI1	chr19	30477324	+	FAM156A	chrX	52955805	-
Frame-shit	ENST00000296490	ENST00000540274		TCGA	LD	OV	TCGA-13-0768-01A	WDR82	chr3	52312217	-	ARHGAP39	chr8	145759586	-
Frame-shit	ENST00000296490	ENST00000377307		TCGA	LD	OV	TCGA-13-0768-01A	WDR82	chr3	52312217	-	ARHGAP39	chr8	145759586	-
Frame-shit	ENST00000296490	ENST00000276826		TCGA	LD	OV	TCGA-13-0768-01A	WDR82	chr3	52312217	-	ARHGAP39	chr8	145759586	-
5CDS-intron	ENST00000296490	ENST00000528810		TCGA	LD	OV	TCGA-13-0768-01A	WDR82	chr3	52312217	-	ARHGAP39	chr8	145759586	-
intron-5UTR	ENST00000419318	ENST00000596731		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
intron-intron	ENST00000419318	ENST00000222190		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
intron-5UTR	ENST00000419318	ENST00000600694		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
5CDS-5UTR	ENST00000430385	ENST00000596731		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
5CDS-intron	ENST00000430385	ENST00000222190		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
5CDS-5UTR	ENST00000430385	ENST00000600694		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
5CDS-5UTR	ENST00000595766	ENST00000596731		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
5CDS-intron	ENST00000595766	ENST00000222190		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
5CDS-5UTR	ENST00000595766	ENST00000600694		TCGA	LD	OV	TCGA-13-0768-01A	ZNF799	chr19	12511882	-	WDR83OS	chr19	12781111	-
Frame-shit	ENST00000336034	ENST00000244289		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
5CDS-5UTR	ENST00000336034	ENST00000602000		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
Frame-shit	ENST00000595337	ENST00000244289		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
5CDS-5UTR	ENST00000595337	ENST00000602000		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
5UTR-3CDS	ENST00000593804	ENST00000244289		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
5UTR-5UTR	ENST00000593804	ENST00000602000		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
Frame-shit	ENST00000596251	ENST00000244289		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
5CDS-5UTR	ENST00000596251	ENST00000602000		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
Frame-shit	ENST00000598727	ENST00000244289		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
5CDS-5UTR	ENST00000598727	ENST00000602000		TCGA	LD	OV	TCGA-13-0797-01A	DEDD2	chr19	42713851	-	LIPE	chr19	42912268	-
In-frame	ENST00000261438	ENST00000515037		TCGA	LD	OV	TCGA-13-0797-01A	KLF3	chr4	38682303	+	FAM114A1	chr4	38924391	+
In-frame	ENST00000261438	ENST00000358869		TCGA	LD	OV	TCGA-13-0797-01A	KLF3	chr4	38682303	+	FAM114A1	chr4	38924391	+
5CDS-intron	ENST00000261438	ENST00000513966		TCGA	LD	OV	TCGA-13-0797-01A	KLF3	chr4	38682303	+	FAM114A1	chr4	38924391	+
In-frame	ENST00000514033	ENST00000515037		TCGA	LD	OV	TCGA-13-0797-01A	KLF3	chr4	38682303	+	FAM114A1	chr4	38924391	+
In-frame	ENST00000514033	ENST00000358869		TCGA	LD	OV	TCGA-13-0797-01A	KLF3	chr4	38682303	+	FAM114A1	chr4	38924391	+
5CDS-intron	ENST00000514033	ENST00000513966		TCGA	LD	OV	TCGA-13-0797-01A	KLF3	chr4	38682303	+	FAM114A1	chr4	38924391	+
Frame-shit	ENST00000495313	ENST00000257700		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
5CDS-intron	ENST00000495313	ENST00000477285		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
Frame-shit	ENST00000320188	ENST00000257700		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
5CDS-intron	ENST00000320188	ENST00000477285		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
Frame-shit	ENST00000608796	ENST00000257700		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
5CDS-intron	ENST00000608796	ENST00000477285		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
Frame-shit	ENST00000419867	ENST00000257700		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
5CDS-intron	ENST00000419867	ENST00000477285		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
Frame-shit	ENST00000418976	ENST00000257700		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
5CDS-intron	ENST00000418976	ENST00000477285		TCGA	LD	OV	TCGA-13-0797-01A	SWI5	chr9	131048312	+	RINT1	chr7	105207566	+
intron-3CDS	ENST00000424296	ENST00000369037		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000424296	ENST00000453874		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000424296	ENST00000369031		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000341338	ENST00000369037		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000341338	ENST00000453874		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000341338	ENST00000369031		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000368948	ENST00000369037		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000368948	ENST00000453874		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000368948	ENST00000369031		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000285397	ENST00000369037		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000285397	ENST00000453874		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000285397	ENST00000369031		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000355283	ENST00000369037		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000355283	ENST00000453874		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000355283	ENST00000369031		TCGA	LD	OV	TCGA-13-0800-01A	AK9	chr6	110011675	-	PDSS2	chr6	107595431	-
5UTR-3UTR	ENST00000597960	ENST00000585548		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000597960	ENST00000317060		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000610101	ENST00000585548		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000610101	ENST00000317060		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
intron-3UTR	ENST00000596558	ENST00000585548		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
intron-3UTR	ENST00000596558	ENST00000317060		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000222308	ENST00000585548		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000222308	ENST00000317060		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000608443	ENST00000585548		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3UTR	ENST00000608443	ENST00000317060		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
intron-3UTR	ENST00000453489	ENST00000585548		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
intron-3UTR	ENST00000453489	ENST00000317060		TCGA	LD	OV	TCGA-13-0800-01A	FKBP8	chr19	18654295	-	DAND5	chr19	13084204	+
5UTR-3CDS	ENST00000425528	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
5UTR-3CDS	ENST00000425528	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
5UTR-3CDS	ENST00000441499	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
5UTR-3CDS	ENST00000441499	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000356861	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000356861	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000450764	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000450764	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000592287	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000592287	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
5UTR-3CDS	ENST00000588216	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
5UTR-3CDS	ENST00000588216	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000589956	ENST00000591090		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
intron-3CDS	ENST00000589956	ENST00000357332		TCGA	LD	OV	TCGA-13-0800-01A	TNPO2	chr19	12834063	-	ASNA1	chr19	12858011	+
5UTR-3CDS	ENST00000586228	ENST00000590247		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000586228	ENST00000419343		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000586228	ENST00000592786		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000586228	ENST00000379316		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000586228	ENST00000586035		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000313040	ENST00000590247		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000313040	ENST00000419343		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000313040	ENST00000592786		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000313040	ENST00000379316		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000313040	ENST00000586035		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589707	ENST00000590247		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589707	ENST00000419343		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589707	ENST00000592786		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589707	ENST00000379316		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000589707	ENST00000586035		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589005	ENST00000590247		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589005	ENST00000419343		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589005	ENST00000592786		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000589005	ENST00000379316		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000589005	ENST00000586035		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000391961	ENST00000590247		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000391961	ENST00000419343		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000391961	ENST00000592786		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000391961	ENST00000379316		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-5UTR	ENST00000391961	ENST00000586035		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000589237	ENST00000590247		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000589237	ENST00000419343		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000589237	ENST00000592786		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000589237	ENST00000379316		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
intron-5UTR	ENST00000589237	ENST00000586035		TCGA	LD	OV	TCGA-13-0800-01A	ZNF227	chr19	44716738	+	PDCD5	chr19	33073101	+
Frame-shit	ENST00000262570	ENST00000392379		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000262570	ENST00000392378		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000262570	ENST00000358186		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000262570	ENST00000441275		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000262570	ENST00000476764		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000448878	ENST00000392379		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000448878	ENST00000392378		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000448878	ENST00000358186		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000448878	ENST00000441275		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000448878	ENST00000476764		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000476546	ENST00000392379		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000476546	ENST00000392378		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000476546	ENST00000358186		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5UTR-3CDS	ENST00000476546	ENST00000441275		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5UTR-intron	ENST00000476546	ENST00000476764		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000542753	ENST00000392379		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000542753	ENST00000392378		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000542753	ENST00000358186		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
Frame-shit	ENST00000542753	ENST00000441275		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
5CDS-intron	ENST00000542753	ENST00000476764		TCGA	LD	OV	TCGA-13-0801-01A	CHCHD3	chr7	132709306	-	BDH1	chr3	197249652	-
In-frame	ENST00000398665	ENST00000582888		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
In-frame	ENST00000398665	ENST00000602676		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
In-frame	ENST00000398665	ENST00000322297		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
In-frame	ENST00000398665	ENST00000583542		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
In-frame	ENST00000398665	ENST00000588673		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000608122	ENST00000582888		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000608122	ENST00000602676		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000608122	ENST00000322297		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000608122	ENST00000583542		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000608122	ENST00000588673		TCGA	LD	OV	TCGA-13-0801-01A	DOT1L	chr19	2164264	+	OAZ1	chr19	2271781	+
In-frame	ENST00000409556	ENST00000404816		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000354476		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000390003		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000418533		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000402934		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000404525		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000407925		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409556	ENST00000272273		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
5CDS-intron	ENST00000409556	ENST00000498013		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000404816		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000354476		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000390003		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000418533		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000402934		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000404525		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000407925		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000312912	ENST00000272273		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
5CDS-intron	ENST00000312912	ENST00000498013		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000404816		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000354476		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000390003		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000418533		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000402934		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000404525		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000407925		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000409064	ENST00000272273		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
5CDS-intron	ENST00000409064	ENST00000498013		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000404816		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000354476		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000390003		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000418533		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000402934		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000404525		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000407925		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
In-frame	ENST00000542128	ENST00000272273		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
5CDS-intron	ENST00000542128	ENST00000498013		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000404816		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000354476		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000390003		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000418533		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000402934		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000404525		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000407925		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-3CDS	ENST00000485171	ENST00000272273		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
intron-intron	ENST00000485171	ENST00000498013		TCGA	LD	OV	TCGA-13-0801-01A	KDM3A	chr2	86694006	+	LTBP1	chr2	33614251	+
5CDS-5UTR	ENST00000372009	ENST00000399136		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-5UTR	ENST00000372009	ENST00000342108		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000372009	ENST00000399139		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000372009	ENST00000399137		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000372009	ENST00000399135		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000372009	ENST00000478313		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-5UTR	ENST00000361297	ENST00000399136		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-5UTR	ENST00000361297	ENST00000342108		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000361297	ENST00000399139		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000361297	ENST00000399137		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000361297	ENST00000399135		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
5CDS-intron	ENST00000361297	ENST00000478313		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-5UTR	ENST00000477968	ENST00000399136		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-5UTR	ENST00000477968	ENST00000342108		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-intron	ENST00000477968	ENST00000399139		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-intron	ENST00000477968	ENST00000399137		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-intron	ENST00000477968	ENST00000399135		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-intron	ENST00000477968	ENST00000478313		TCGA	LD	OV	TCGA-13-0801-01A	MAST2	chr1	46295253	+	CLDN14	chr21	37882798	-
intron-intron	ENST00000264674	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000264674	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000392736	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000464456	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000472280	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-5UTR	ENST00000494292	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000468789	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000460814	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000433243	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000316428		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-5UTR	ENST00000485957	ENST00000264676		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000523069		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000397805		TCGA	LD	OV	TCGA-13-0801-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
Frame-shit	ENST00000330133	ENST00000541714		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
Frame-shit	ENST00000330133	ENST00000539908		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
Frame-shit	ENST00000330133	ENST00000382008		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
Frame-shit	ENST00000330133	ENST00000589378		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
Frame-shit	ENST00000330133	ENST00000262968		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
Frame-shit	ENST00000330133	ENST00000587686		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
5CDS-3UTR	ENST00000330133	ENST00000587641		TCGA	LD	OV	TCGA-13-0801-01A	MRPL54	chr19	3767384	+	TJP3	chr19	3750136	+
intron-3CDS	ENST00000553221	ENST00000552285		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000315970		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000439210		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000389146		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000413095		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000551035		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000435406		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000257966		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000389142		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000257910	ENST00000552285		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000257910	ENST00000315970		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000257910	ENST00000439210		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000257910	ENST00000389146		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000257910	ENST00000413095		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000257910	ENST00000551035		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000257910	ENST00000435406		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000257910	ENST00000257966		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000257910	ENST00000389142		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000547992	ENST00000552285		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000547992	ENST00000315970		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000547992	ENST00000439210		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-3CDS	ENST00000547992	ENST00000389146		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000547992	ENST00000413095		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000547992	ENST00000551035		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000547992	ENST00000435406		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000547992	ENST00000257966		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
3UTR-intron	ENST00000547992	ENST00000389142		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000552285		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000315970		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000439210		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547472	ENST00000389146		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000413095		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000551035		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000435406		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000257966		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-intron	ENST00000547472	ENST00000389142		TCGA	LD	OV	TCGA-13-0801-01A	TSPAN31	chr12	58142999	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000520408	ENST00000355849		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000520408	ENST00000520981		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000520408	ENST00000522578		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
In-frame	ENST00000310430	ENST00000355849		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
In-frame	ENST00000310430	ENST00000520981		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
5CDS-intron	ENST00000310430	ENST00000522578		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
In-frame	ENST00000518281	ENST00000355849		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
In-frame	ENST00000518281	ENST00000520981		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
5CDS-intron	ENST00000518281	ENST00000522578		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000522110	ENST00000355849		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000522110	ENST00000520981		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000522110	ENST00000522578		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000518027	ENST00000355849		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-3CDS	ENST00000518027	ENST00000520981		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
intron-intron	ENST00000518027	ENST00000522578		TCGA	LD	OV	TCGA-13-0884-01B	TNKS	chr8	9622300	+	KHDRBS3	chr8	136619198	+
5UTR-intron	ENST00000317147	ENST00000439977		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000317147	ENST00000300302		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000317147	ENST00000344114		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000317147	ENST00000570273		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000317147	ENST00000379792		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000569240	ENST00000439977		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000569240	ENST00000300302		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000569240	ENST00000344114		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000569240	ENST00000570273		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000569240	ENST00000379792		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000441024	ENST00000439977		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000441024	ENST00000300302		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000441024	ENST00000344114		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000441024	ENST00000570273		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5UTR-intron	ENST00000441024	ENST00000379792		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000569732	ENST00000439977		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000569732	ENST00000300302		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000569732	ENST00000344114		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000569732	ENST00000570273		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000569732	ENST00000379792		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000245138	ENST00000439977		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000245138	ENST00000300302		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000245138	ENST00000344114		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000245138	ENST00000570273		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
intron-intron	ENST00000245138	ENST00000379792		TCGA	LD	OV	TCGA-13-0885-01A	CNOT1	chr16	58663632	-	HERPUD1	chr16	56977894	+
5CDS-5UTR	ENST00000315127	ENST00000322347		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000315127	ENST00000562233		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000315127	ENST00000567270		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000315127	ENST00000568783		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-intron	ENST00000315127	ENST00000568517		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000315127	ENST00000564811		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000426797	ENST00000322347		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000426797	ENST00000562233		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000426797	ENST00000567270		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000426797	ENST00000568783		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-intron	ENST00000426797	ENST00000568517		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000426797	ENST00000564811		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000568176	ENST00000322347		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000568176	ENST00000562233		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000568176	ENST00000567270		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000568176	ENST00000568783		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-intron	ENST00000568176	ENST00000568517		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000568176	ENST00000564811		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
intron-5UTR	ENST00000562047	ENST00000322347		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
intron-5UTR	ENST00000562047	ENST00000562233		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
intron-5UTR	ENST00000562047	ENST00000567270		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
intron-5UTR	ENST00000562047	ENST00000568783		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
intron-intron	ENST00000562047	ENST00000568517		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
intron-5UTR	ENST00000562047	ENST00000564811		TCGA	LD	OV	TCGA-13-0885-01A	EDC3	chr15	74967302	-	COX5A	chr15	75230377	-
5CDS-5UTR	ENST00000383836	ENST00000352433		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-5UTR	ENST00000383836	ENST00000520452		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-5UTR	ENST00000383836	ENST00000393964		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-intron	ENST00000383836	ENST00000519287		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-5UTR	ENST00000360413	ENST00000352433		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-5UTR	ENST00000360413	ENST00000520452		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-5UTR	ENST00000360413	ENST00000393964		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
5CDS-intron	ENST00000360413	ENST00000519287		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
intron-5UTR	ENST00000433332	ENST00000352433		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
intron-5UTR	ENST00000433332	ENST00000520452		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
intron-5UTR	ENST00000433332	ENST00000393964		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
intron-intron	ENST00000433332	ENST00000519287		TCGA	LD	OV	TCGA-13-0885-01A	SRGAP3	chr3	9290569	-	PTTG1	chr5	159849309	+
intron-3CDS	ENST00000552491	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552491	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552491	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552491	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000547825	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000547825	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000547825	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000547825	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552823	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552823	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552823	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552823	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000394943	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000394943	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000394943	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000394943	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000341247	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000341247	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000341247	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
5UTR-3CDS	ENST00000341247	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552783	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552783	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552783	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552783	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552909	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552909	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552909	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552909	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552008	ENST00000304685		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552008	ENST00000536277		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552008	ENST00000360851		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
intron-3CDS	ENST00000552008	ENST00000539189		TCGA	LD	OV	TCGA-13-0888-01A	LIMA1	chr12	50677203	-	RGL1	chr1	183849750	+
Frame-shit	ENST00000181839	ENST00000403058		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000181839	ENST00000518318		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000181839	ENST00000517348		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000181839	ENST00000559001		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000181839	ENST00000464276		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000340829	ENST00000403058		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000340829	ENST00000518318		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000340829	ENST00000517348		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000340829	ENST00000559001		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
5CDS-intron	ENST00000340829	ENST00000464276		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
intron-3CDS	ENST00000484589	ENST00000403058		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
intron-3CDS	ENST00000484589	ENST00000518318		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
intron-intron	ENST00000484589	ENST00000517348		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
intron-intron	ENST00000484589	ENST00000559001		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
intron-intron	ENST00000484589	ENST00000464276		TCGA	LD	OV	TCGA-13-0890-01A	CDK13	chr7	39991451	+	POU6F2	chr7	39472676	+
Frame-shit	ENST00000377376	ENST00000294435		TCGA	LD	OV	TCGA-13-0890-01A	TMEM201	chr1	9657111	+	RBP7	chr1	10075840	+
Frame-shit	ENST00000340305	ENST00000294435		TCGA	LD	OV	TCGA-13-0890-01A	TMEM201	chr1	9657111	+	RBP7	chr1	10075840	+
Frame-shit	ENST00000340381	ENST00000294435		TCGA	LD	OV	TCGA-13-0890-01A	TMEM201	chr1	9657111	+	RBP7	chr1	10075840	+
intron-3CDS	ENST00000510900	ENST00000294435		TCGA	LD	OV	TCGA-13-0890-01A	TMEM201	chr1	9657111	+	RBP7	chr1	10075840	+
In-frame	ENST00000396560	ENST00000320394		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396560	ENST00000564186		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396560	ENST00000541926		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396560	ENST00000433597		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
5CDS-3UTR	ENST00000396560	ENST00000562762		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396559	ENST00000320394		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396559	ENST00000564186		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396559	ENST00000541926		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000396559	ENST00000433597		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
5CDS-3UTR	ENST00000396559	ENST00000562762		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000561932	ENST00000320394		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000561932	ENST00000564186		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000561932	ENST00000541926		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000561932	ENST00000433597		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3UTR	ENST00000561932	ENST00000562762		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000543967	ENST00000320394		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000543967	ENST00000564186		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000543967	ENST00000541926		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3CDS	ENST00000543967	ENST00000433597		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
intron-3UTR	ENST00000543967	ENST00000562762		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000356427	ENST00000320394		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000356427	ENST00000564186		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000356427	ENST00000541926		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000356427	ENST00000433597		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
5CDS-3UTR	ENST00000356427	ENST00000562762		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000324570	ENST00000320394		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000324570	ENST00000564186		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000324570	ENST00000541926		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
In-frame	ENST00000324570	ENST00000433597		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
5CDS-3UTR	ENST00000324570	ENST00000562762		TCGA	LD	OV	TCGA-13-0893-01B	ATF7IP2	chr16	10534319	+	IQCK	chr16	19775170	+
Frame-shit	ENST00000339594	ENST00000223368		TCGA	LD	OV	TCGA-13-0893-01B	BAZ1B	chr7	72873866	-	BCL7B	chr7	72966572	-
Frame-shit	ENST00000339594	ENST00000411832		TCGA	LD	OV	TCGA-13-0893-01B	BAZ1B	chr7	72873866	-	BCL7B	chr7	72966572	-
5CDS-5UTR	ENST00000339594	ENST00000482231		TCGA	LD	OV	TCGA-13-0893-01B	BAZ1B	chr7	72873866	-	BCL7B	chr7	72966572	-
Frame-shit	ENST00000404251	ENST00000223368		TCGA	LD	OV	TCGA-13-0893-01B	BAZ1B	chr7	72873866	-	BCL7B	chr7	72966572	-
Frame-shit	ENST00000404251	ENST00000411832		TCGA	LD	OV	TCGA-13-0893-01B	BAZ1B	chr7	72873866	-	BCL7B	chr7	72966572	-
5CDS-5UTR	ENST00000404251	ENST00000482231		TCGA	LD	OV	TCGA-13-0893-01B	BAZ1B	chr7	72873866	-	BCL7B	chr7	72966572	-
Frame-shit	ENST00000301067	ENST00000267102		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
Frame-shit	ENST00000301067	ENST00000547382		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
5CDS-intron	ENST00000301067	ENST00000395141		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
5CDS-5UTR	ENST00000301067	ENST00000553204		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
intron-3CDS	ENST00000549743	ENST00000267102		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
intron-3CDS	ENST00000549743	ENST00000547382		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
intron-intron	ENST00000549743	ENST00000395141		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
intron-5UTR	ENST00000549743	ENST00000553204		TCGA	LD	OV	TCGA-13-0893-01B	KMT2D	chr12	49439703	-	LMBR1L	chr12	49500828	-
5UTR-3CDS	ENST00000319928	ENST00000576409		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-3CDS	ENST00000319928	ENST00000574428		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-3CDS	ENST00000319928	ENST00000371937		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000319928	ENST00000542495		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000319928	ENST00000329231		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000319928	ENST00000532925		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000319928	ENST00000525633		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-3CDS	ENST00000271139	ENST00000576409		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-3CDS	ENST00000271139	ENST00000574428		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-3CDS	ENST00000271139	ENST00000371937		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000271139	ENST00000542495		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000271139	ENST00000329231		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000271139	ENST00000532925		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000271139	ENST00000525633		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-3CDS	ENST00000371940	ENST00000576409		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-3CDS	ENST00000371940	ENST00000574428		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-3CDS	ENST00000371940	ENST00000371937		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000371940	ENST00000542495		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000371940	ENST00000329231		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000371940	ENST00000532925		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
intron-5UTR	ENST00000371940	ENST00000525633		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-3CDS	ENST00000477318	ENST00000576409		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-3CDS	ENST00000477318	ENST00000574428		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-3CDS	ENST00000477318	ENST00000371937		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000477318	ENST00000542495		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000477318	ENST00000329231		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000477318	ENST00000532925		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
5UTR-5UTR	ENST00000477318	ENST00000525633		TCGA	LD	OV	TCGA-13-0893-01B	MOB3C	chr1	47082383	-	ATPAF1	chr1	47131036	-
Frame-shit	ENST00000225426	ENST00000439660		TCGA	LD	OV	TCGA-13-0893-01B	PSMB3	chr17	36918758	+	CISD3	chr17	36887573	+
5CDS-3UTR	ENST00000225426	ENST00000578573		TCGA	LD	OV	TCGA-13-0893-01B	PSMB3	chr17	36918758	+	CISD3	chr17	36887573	+
5CDS-intron	ENST00000377227	ENST00000418536		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377227	ENST00000448689		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377227	ENST00000396321		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377227	ENST00000396331		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377227	ENST00000396327		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377227	ENST00000434867		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377227	ENST00000324602		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377227	ENST00000396332		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377227	ENST00000427581		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377227	ENST00000396317		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377227	ENST00000396315		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377227	ENST00000462628		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377219	ENST00000418536		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377219	ENST00000448689		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377219	ENST00000396321		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377219	ENST00000396331		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377219	ENST00000396327		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377219	ENST00000434867		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377219	ENST00000324602		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377219	ENST00000396332		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000377219	ENST00000427581		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377219	ENST00000396317		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377219	ENST00000396315		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000377219	ENST00000462628		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000506128	ENST00000418536		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000506128	ENST00000448689		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000506128	ENST00000396321		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000506128	ENST00000396331		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000506128	ENST00000396327		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000506128	ENST00000434867		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000506128	ENST00000324602		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000506128	ENST00000396332		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000506128	ENST00000427581		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000506128	ENST00000396317		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000506128	ENST00000396315		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000506128	ENST00000462628		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000511320	ENST00000418536		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000511320	ENST00000448689		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000511320	ENST00000396321		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000511320	ENST00000396331		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000511320	ENST00000396327		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000511320	ENST00000434867		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000511320	ENST00000324602		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000511320	ENST00000396332		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-5UTR	ENST00000511320	ENST00000427581		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000511320	ENST00000396317		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000511320	ENST00000396315		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5CDS-intron	ENST00000511320	ENST00000462628		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-intron	ENST00000503273	ENST00000418536		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-intron	ENST00000503273	ENST00000448689		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-intron	ENST00000503273	ENST00000396321		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-5UTR	ENST00000503273	ENST00000396331		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-5UTR	ENST00000503273	ENST00000396327		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-5UTR	ENST00000503273	ENST00000434867		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-5UTR	ENST00000503273	ENST00000324602		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-5UTR	ENST00000503273	ENST00000396332		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-5UTR	ENST00000503273	ENST00000427581		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-intron	ENST00000503273	ENST00000396317		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-intron	ENST00000503273	ENST00000396315		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
intron-intron	ENST00000503273	ENST00000462628		TCGA	LD	OV	TCGA-13-0893-01B	UIMC1	chr5	176409470	-	LILRB1	chr19	55142477	+
5UTR-5UTR	ENST00000430629	ENST00000374005		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000399173		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000545953		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000430629	ENST00000374004		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000468038		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000374005		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000399173		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000545953		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000536657	ENST00000374004		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000468038		TCGA	LD	OV	TCGA-13-0893-01B	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
3UTR-3CDS	ENST00000526301	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
3UTR-intron	ENST00000526301	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
Frame-shit	ENST00000342115	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
5CDS-intron	ENST00000342115	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
5UTR-3CDS	ENST00000528667	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
5UTR-intron	ENST00000528667	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-3CDS	ENST00000256578	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-intron	ENST00000256578	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-3CDS	ENST00000358729	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-intron	ENST00000358729	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-3CDS	ENST00000528454	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-intron	ENST00000528454	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-3CDS	ENST00000393688	ENST00000370008		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
intron-intron	ENST00000393688	ENST00000485167		TCGA	LD	OV	TCGA-13-0897-01A	AMPD2	chr1	110162900	+	STXBP3	chr1	109338856	+
5CDS-5UTR	ENST00000275262	ENST00000372014		TCGA	LD	OV	TCGA-13-0897-01A	QKI	chr6	163899928	+	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000392127	ENST00000372014		TCGA	LD	OV	TCGA-13-0897-01A	QKI	chr6	163899928	+	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000453779	ENST00000372014		TCGA	LD	OV	TCGA-13-0897-01A	QKI	chr6	163899928	+	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000361752	ENST00000372014		TCGA	LD	OV	TCGA-13-0897-01A	QKI	chr6	163899928	+	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000361195	ENST00000372014		TCGA	LD	OV	TCGA-13-0897-01A	QKI	chr6	163899928	+	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000424802	ENST00000372014		TCGA	LD	OV	TCGA-13-0897-01A	QKI	chr6	163899928	+	MRPL14	chr6	44084366	-
In-frame	ENST00000544604	ENST00000332050		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000544604	ENST00000397938		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000544604	ENST00000406548		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000544604	ENST00000331029		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000544604	ENST00000414183		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000544604	ENST00000333395		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000544604	ENST00000332035		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000332050		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000397938		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000406548		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000331029		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000414183		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000333395		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000332811	ENST00000332035		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000332050		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000397938		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000406548		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000331029		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000414183		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000333395		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000402174	ENST00000332035		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000332050		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000397938		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000406548		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000331029		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000414183		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000333395		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000406323	ENST00000332035		TCGA	LD	OV	TCGA-13-0900-01B	ZNRF3	chr22	29383189	+	EWSR1	chr22	29669730	+
In-frame	ENST00000377967	ENST00000247843		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000377967	ENST00000548020		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000382899	ENST00000247843		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000382899	ENST00000548020		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000536777	ENST00000247843		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000536777	ENST00000548020		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000543216	ENST00000247843		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
In-frame	ENST00000543216	ENST00000548020		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000479423	ENST00000247843		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000479423	ENST00000548020		TCGA	LD	OV	TCGA-13-0901-01B	KDM6A	chrX	44920664	+	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000359428	ENST00000312932		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000359428	ENST00000403484		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000359428	ENST00000405717		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000359428	ENST00000402592		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000359428	ENST00000459728		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000411637	ENST00000312932		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000411637	ENST00000403484		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000411637	ENST00000405717		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000411637	ENST00000402592		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000411637	ENST00000459728		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000451030	ENST00000312932		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000451030	ENST00000403484		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000451030	ENST00000405717		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000451030	ENST00000402592		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000451030	ENST00000459728		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000483497	ENST00000312932		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000483497	ENST00000403484		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000483497	ENST00000405717		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000483497	ENST00000402592		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000483497	ENST00000459728		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000465486	ENST00000312932		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-3CDS	ENST00000465486	ENST00000403484		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000465486	ENST00000405717		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000465486	ENST00000402592		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-intron	ENST00000465486	ENST00000459728		TCGA	LD	OV	TCGA-13-0901-01B	NUP214	chr9	134010613	+	SEC14L2	chr22	30818284	+
intron-5UTR	ENST00000506646	ENST00000304062		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
intron-5UTR	ENST00000506646	ENST00000505203		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
intron-5UTR	ENST00000507078	ENST00000304062		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
intron-5UTR	ENST00000507078	ENST00000505203		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
5UTR-5UTR	ENST00000338977	ENST00000304062		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
5UTR-5UTR	ENST00000338977	ENST00000505203		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
5UTR-5UTR	ENST00000511833	ENST00000304062		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
5UTR-5UTR	ENST00000511833	ENST00000505203		TCGA	LD	OV	TCGA-13-0901-01B	ZNF721	chr4	492845	-	CPLX1	chr4	818389	-
In-frame	ENST00000220496	ENST00000264710		TCGA	LD	OV	TCGA-13-0906-01A	DNAJC17	chr15	41099567	-	RAB10	chr2	26350013	+
5CDS-3UTR	ENST00000220496	ENST00000462003		TCGA	LD	OV	TCGA-13-0906-01A	DNAJC17	chr15	41099567	-	RAB10	chr2	26350013	+
intron-3CDS	ENST00000558727	ENST00000264710		TCGA	LD	OV	TCGA-13-0906-01A	DNAJC17	chr15	41099567	-	RAB10	chr2	26350013	+
intron-3UTR	ENST00000558727	ENST00000462003		TCGA	LD	OV	TCGA-13-0906-01A	DNAJC17	chr15	41099567	-	RAB10	chr2	26350013	+
In-frame	ENST00000264710	ENST00000220496		TCGA	LD	OV	TCGA-13-0906-01A	RAB10	chr2	26332775	+	DNAJC17	chr15	41072195	-
5CDS-intron	ENST00000264710	ENST00000558727		TCGA	LD	OV	TCGA-13-0906-01A	RAB10	chr2	26332775	+	DNAJC17	chr15	41072195	-
3UTR-3CDS	ENST00000462003	ENST00000220496		TCGA	LD	OV	TCGA-13-0906-01A	RAB10	chr2	26332775	+	DNAJC17	chr15	41072195	-
3UTR-intron	ENST00000462003	ENST00000558727		TCGA	LD	OV	TCGA-13-0906-01A	RAB10	chr2	26332775	+	DNAJC17	chr15	41072195	-
Frame-shit	ENST00000339282	ENST00000382865		TCGA	LD	OV	TCGA-13-0906-01A	ZNF564	chr19	12662144	-	POLN	chr4	2097660	-
Frame-shit	ENST00000339282	ENST00000511885		TCGA	LD	OV	TCGA-13-0906-01A	ZNF564	chr19	12662144	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000339282	ENST00000515357		TCGA	LD	OV	TCGA-13-0906-01A	ZNF564	chr19	12662144	-	POLN	chr4	2097660	-
Frame-shit	ENST00000416136	ENST00000382865		TCGA	LD	OV	TCGA-13-0906-01A	ZNF564	chr19	12662144	-	POLN	chr4	2097660	-
Frame-shit	ENST00000416136	ENST00000511885		TCGA	LD	OV	TCGA-13-0906-01A	ZNF564	chr19	12662144	-	POLN	chr4	2097660	-
5CDS-intron	ENST00000416136	ENST00000515357		TCGA	LD	OV	TCGA-13-0906-01A	ZNF564	chr19	12662144	-	POLN	chr4	2097660	-
intron-3CDS	ENST00000371687	ENST00000413330		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
intron-3CDS	ENST00000371687	ENST00000371703		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
intron-3UTR	ENST00000371687	ENST00000489806		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
In-frame	ENST00000543648	ENST00000413330		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
In-frame	ENST00000543648	ENST00000371703		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
5CDS-3UTR	ENST00000543648	ENST00000489806		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
intron-3CDS	ENST00000490164	ENST00000413330		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
intron-3CDS	ENST00000490164	ENST00000371703		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
intron-3UTR	ENST00000490164	ENST00000489806		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
In-frame	ENST00000336126	ENST00000413330		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
In-frame	ENST00000336126	ENST00000371703		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
5CDS-3UTR	ENST00000336126	ENST00000489806		TCGA	LD	OV	TCGA-13-0911-01A	PCGF5	chr10	93021181	+	RPP30	chr10	92655637	+
Frame-shit	ENST00000296444	ENST00000519595		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000296444	ENST00000518642		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000296444	ENST00000250173		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
5CDS-intron	ENST00000296444	ENST00000520446		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000444115	ENST00000519595		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000444115	ENST00000518642		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000444115	ENST00000250173		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
5CDS-intron	ENST00000444115	ENST00000520446		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000426002	ENST00000519595		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000426002	ENST00000518642		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000426002	ENST00000250173		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-intron	ENST00000426002	ENST00000520446		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000465449	ENST00000519595		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000465449	ENST00000518642		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000465449	ENST00000250173		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-intron	ENST00000465449	ENST00000520446		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000442747	ENST00000519595		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000442747	ENST00000518642		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
Frame-shit	ENST00000442747	ENST00000250173		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
5CDS-intron	ENST00000442747	ENST00000520446		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000443308	ENST00000519595		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000443308	ENST00000518642		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-3CDS	ENST00000443308	ENST00000250173		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
intron-intron	ENST00000443308	ENST00000520446		TCGA	LD	OV	TCGA-13-0911-01A	SHISA5	chr3	48538570	-	LRRC6	chr8	133596026	-
5UTR-3CDS	ENST00000399537	ENST00000425013		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
5UTR-3CDS	ENST00000399537	ENST00000389902		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
5UTR-intron	ENST00000399537	ENST00000469375		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
5UTR-3CDS	ENST00000430969	ENST00000425013		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
5UTR-3CDS	ENST00000430969	ENST00000389902		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
5UTR-intron	ENST00000430969	ENST00000469375		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
intron-intron	ENST00000399434	ENST00000469375		TCGA	LD	OV	TCGA-13-0911-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5692141	-
5CDS-5UTR	ENST00000373625	ENST00000375640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000373625	ENST00000375641		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000373625	ENST00000375638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000373625	ENST00000375635		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000375639		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000373625	ENST00000375642		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000373625	ENST00000395789		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000373625	ENST00000375633		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000395788		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000424962		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000456268		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000435938		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000433752		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000458514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000549426		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000550200		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000430690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000436558		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000456690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000439907		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000444974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000439865		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000413638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000423640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000444192		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000551797		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000552514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000440361		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000443974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000416886		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000436205		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000450610		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000433697		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000414434		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000421605		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000444331		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000551957		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000550492		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000423916		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000436495		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000426843		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000421039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000414536		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000400038		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000383384		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000383385		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000383383		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000547624		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000550685		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000400037		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000400035		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000400034		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000373625	ENST00000400039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000375640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000375641		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000375638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000375635		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000375639		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000375642		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000395789		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000537234	ENST00000375633		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000395788		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000424962		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000456268		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000435938		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000433752		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000458514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000549426		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000550200		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000430690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000436558		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000456690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000439907		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000444974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000439865		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000413638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000423640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000444192		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000551797		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000552514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000440361		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000443974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000416886		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000436205		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000450610		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000433697		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000414434		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000421605		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000444331		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000551957		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000550492		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000423916		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000436495		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000426843		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000421039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000414536		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000400038		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000383384		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000383385		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000383383		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000547624		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000550685		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000400037		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000400035		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000400034		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000537234	ENST00000400039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000375640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000375641		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000375638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000375635		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000375639		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000375642		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000395789		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000469790	ENST00000375633		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000395788		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000424962		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000456268		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000435938		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000433752		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000458514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000549426		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000550200		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000430690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000436558		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000456690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000439907		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000444974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000439865		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000413638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000423640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000444192		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000551797		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000552514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000440361		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000443974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000416886		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000436205		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000450610		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000433697		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000414434		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000421605		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000444331		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000551957		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000550492		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000423916		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000436495		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000426843		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000421039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000414536		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000400038		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000383384		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000383385		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000383383		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000547624		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000550685		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000400037		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000400035		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000400034		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000469790	ENST00000400039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000375640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000375641		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000375638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000375635		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000375639		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000375642		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000395789		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000545542	ENST00000375633		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000395788		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000424962		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000456268		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000435938		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000433752		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000458514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000549426		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000550200		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000430690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000436558		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000456690		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000439907		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000444974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000439865		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000413638		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000423640		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000444192		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000551797		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000552514		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000440361		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000443974		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000416886		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000436205		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000450610		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000433697		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000414434		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000421605		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000444331		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000551957		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000550492		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000423916		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000436495		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000426843		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000421039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000414536		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000400038		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000383384		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000383385		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000383383		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000547624		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000550685		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000400037		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000400035		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000400034		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
intron-intron	ENST00000545542	ENST00000400039		TCGA	LD	OV	TCGA-13-0913-01A	KPNA6	chr1	32573735	+	C6orf48	chr6	31803188	+
Frame-shit	ENST00000234453	ENST00000392505		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000359685		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000357080		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000409045		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000190611		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000409631		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000315022		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
5CDS-intron	ENST00000234453	ENST00000477097		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-3CDS	ENST00000461474	ENST00000392505		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000359685		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000357080		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000409045		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000190611		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000409631		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000315022		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
intron-intron	ENST00000461474	ENST00000477097		TCGA	LD	OV	TCGA-13-0913-01A	PLEKHA3	chr2	179345636	+	OSBPL6	chr2	179236853	+
In-frame	ENST00000371671	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
5CDS-3UTR	ENST00000371671	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
In-frame	ENST00000371663	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
5CDS-3UTR	ENST00000371663	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
In-frame	ENST00000311502	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
5CDS-3UTR	ENST00000311502	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
In-frame	ENST00000357466	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
5CDS-3UTR	ENST00000357466	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
intron-3CDS	ENST00000432842	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
intron-3UTR	ENST00000432842	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
intron-3CDS	ENST00000371675	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
intron-3UTR	ENST00000371675	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
intron-3CDS	ENST00000466096	ENST00000290079		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
intron-3UTR	ENST00000466096	ENST00000465017		TCGA	LD	OV	TCGA-13-0913-01A	RABL6	chr9	139702778	+	TMEM141	chr9	139686703	+
Frame-shit	ENST00000377452	ENST00000513335		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
Frame-shit	ENST00000377452	ENST00000398886		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
Frame-shit	ENST00000377452	ENST00000325106		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
5CDS-intron	ENST00000377452	ENST00000506019		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
3UTR-3CDS	ENST00000494921	ENST00000513335		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
3UTR-3CDS	ENST00000494921	ENST00000398886		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
3UTR-3CDS	ENST00000494921	ENST00000325106		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
3UTR-intron	ENST00000494921	ENST00000506019		TCGA	LD	OV	TCGA-13-0920-01A	DTD1	chr20	18608877	+	TTC29	chr4	147628703	-
Frame-shit	ENST00000326047	ENST00000376062		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
In-frame	ENST00000326047	ENST00000376055		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000326047	ENST00000307677		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
In-frame	ENST00000326047	ENST00000420653		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000425755	ENST00000376062		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000425755	ENST00000376055		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000425755	ENST00000307677		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000425755	ENST00000420653		TCGA	LD	OV	TCGA-13-0920-01A	KIF15	chr3	44803376	+	BCL2L1	chr20	30253889	-
intron-5UTR	ENST00000430069	ENST00000446256		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000430069	ENST00000445061		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
intron-3UTR	ENST00000430069	ENST00000476446		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
intron-5UTR	ENST00000430069	ENST00000348968		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
intron-intron	ENST00000430069	ENST00000457607		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000457928	ENST00000446256		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000457928	ENST00000445061		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000457928	ENST00000476446		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000457928	ENST00000348968		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000457928	ENST00000457607		TCGA	LD	OV	TCGA-13-0920-01A	TBL1XR1	chr3	176914909	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000301765	ENST00000530124		TCGA	LD	OV	TCGA-13-0920-01A	VPS37C	chr11	60928863	-	AHNAK	chr11	62259303	-
5UTR-intron	ENST00000301765	ENST00000257247		TCGA	LD	OV	TCGA-13-0920-01A	VPS37C	chr11	60928863	-	AHNAK	chr11	62259303	-
5UTR-5UTR	ENST00000301765	ENST00000525875		TCGA	LD	OV	TCGA-13-0920-01A	VPS37C	chr11	60928863	-	AHNAK	chr11	62259303	-
5UTR-intron	ENST00000301765	ENST00000378024		TCGA	LD	OV	TCGA-13-0920-01A	VPS37C	chr11	60928863	-	AHNAK	chr11	62259303	-
5UTR-3CDS	ENST00000328631	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000328631	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000328631	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000340879	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000340879	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000340879	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000432678	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000432678	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000432678	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000431721	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000431721	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000431721	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000449610	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000449610	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000449610	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000413298	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000413298	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000413298	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000450045	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000450045	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000450045	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000446860	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000446860	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000446860	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000417896	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000417896	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000417896	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000443964	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000443964	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000443964	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000436134	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000436134	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5UTR-3CDS	ENST00000436134	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000453202	ENST00000265563		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000453202	ENST00000454963		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
intron-3CDS	ENST00000453202	ENST00000296446		TCGA	LD	OV	TCGA-13-0923-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48802782	-
5CDS-5UTR	ENST00000494857	ENST00000355831		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000494857	ENST00000343439		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000494857	ENST00000392782		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000494857	ENST00000392783		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000494857	ENST00000483316		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000522656	ENST00000355831		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000522656	ENST00000343439		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000522656	ENST00000392782		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000522656	ENST00000392783		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000522656	ENST00000483316		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000470360	ENST00000355831		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000470360	ENST00000343439		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000470360	ENST00000392782		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000470360	ENST00000392783		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000470360	ENST00000483316		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000004531	ENST00000355831		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000004531	ENST00000343439		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000004531	ENST00000392782		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000004531	ENST00000392783		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000004531	ENST00000483316		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000398090	ENST00000355831		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000398090	ENST00000343439		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000398090	ENST00000392782		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000398090	ENST00000392783		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
5CDS-5UTR	ENST00000398090	ENST00000483316		TCGA	LD	OV	TCGA-13-0923-01A	SLC7A2	chr8	17402115	+	BAZ2B	chr2	160412376	-
In-frame	ENST00000376062	ENST00000371175		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
In-frame	ENST00000376062	ENST00000229810		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
intron-3CDS	ENST00000376055	ENST00000371175		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
intron-3CDS	ENST00000376055	ENST00000229810		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
Frame-shit	ENST00000307677	ENST00000371175		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
Frame-shit	ENST00000307677	ENST00000229810		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
Frame-shit	ENST00000420653	ENST00000371175		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
Frame-shit	ENST00000420653	ENST00000229810		TCGA	LD	OV	TCGA-13-0924-01A	BCL2L1	chr20	30309458	-	RHAG	chr6	49583484	-
Frame-shit	ENST00000355831	ENST00000283243		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000355831	ENST00000392771		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
5CDS-intron	ENST00000355831	ENST00000460710		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000343439	ENST00000283243		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000343439	ENST00000392771		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
5CDS-intron	ENST00000343439	ENST00000460710		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000392782	ENST00000283243		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000392782	ENST00000392771		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
5CDS-intron	ENST00000392782	ENST00000460710		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000392783	ENST00000283243		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
Frame-shit	ENST00000392783	ENST00000392771		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
5CDS-intron	ENST00000392783	ENST00000460710		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
intron-3CDS	ENST00000483316	ENST00000283243		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
intron-3CDS	ENST00000483316	ENST00000392771		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
intron-intron	ENST00000483316	ENST00000460710		TCGA	LD	OV	TCGA-13-1403-01A	BAZ2B	chr2	160284822	-	PLA2R1	chr2	160825870	-
In-frame	ENST00000322536	ENST00000278616		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
In-frame	ENST00000322536	ENST00000452508		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
5CDS-3UTR	ENST00000322536	ENST00000525178		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
In-frame	ENST00000526794	ENST00000278616		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
In-frame	ENST00000526794	ENST00000452508		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
5CDS-3UTR	ENST00000526794	ENST00000525178		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
intron-3CDS	ENST00000534221	ENST00000278616		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
intron-3CDS	ENST00000534221	ENST00000452508		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
intron-3UTR	ENST00000534221	ENST00000525178		TCGA	LD	OV	TCGA-13-1403-01A	DDX10	chr11	108722936	+	ATM	chr11	108235809	+
5CDS-5UTR	ENST00000528896	ENST00000341217		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000581407		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000582266		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000452648		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000582059		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000583953		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000577682		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000583522		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000528896	ENST00000581381		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000341217		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000581407		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000582266		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000452648		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000582059		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000583953		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000577682		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000583522		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000544884	ENST00000581381		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000341217		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000581407		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000582266		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000452648		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000582059		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000583953		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000577682		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000583522		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5CDS-5UTR	ENST00000389003	ENST00000581381		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000341217		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000581407		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000582266		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000452648		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000582059		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000583953		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000577682		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000583522		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
intron-5UTR	ENST00000579924	ENST00000581381		TCGA	LD	OV	TCGA-13-1403-01A	KIAA0100	chr17	26958497	-	FAM222B	chr17	27093725	-
5UTR-3CDS	ENST00000343470	ENST00000393893		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
5UTR-3CDS	ENST00000343470	ENST00000341356		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
5UTR-intron	ENST00000343470	ENST00000539724		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
5UTR-intron	ENST00000343470	ENST00000453768		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
5UTR-3UTR	ENST00000343470	ENST00000545016		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
intron-3CDS	ENST00000452476	ENST00000393893		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
intron-3CDS	ENST00000452476	ENST00000341356		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
intron-intron	ENST00000452476	ENST00000539724		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
intron-intron	ENST00000452476	ENST00000453768		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
intron-3UTR	ENST00000452476	ENST00000545016		TCGA	LD	OV	TCGA-13-1403-01A	LYAR	chr4	4291763	-	CORO1B	chr11	67208985	-
Frame-shit	ENST00000421905	ENST00000402988		TCGA	LD	OV	TCGA-13-1403-01A	PPP1R37	chr19	45596785	+	IGSF23	chr19	45127000	+
Frame-shit	ENST00000221462	ENST00000402988		TCGA	LD	OV	TCGA-13-1403-01A	PPP1R37	chr19	45596785	+	IGSF23	chr19	45127000	+
3UTR-3CDS	ENST00000496125	ENST00000402988		TCGA	LD	OV	TCGA-13-1403-01A	PPP1R37	chr19	45596785	+	IGSF23	chr19	45127000	+
5CDS-5UTR	ENST00000431666	ENST00000316219		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000431666	ENST00000450632		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000431666	ENST00000345866		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000431666	ENST00000449561		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000338624	ENST00000316219		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000338624	ENST00000450632		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000338624	ENST00000345866		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000338624	ENST00000449561		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000245615	ENST00000316219		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000245615	ENST00000450632		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000245615	ENST00000345866		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5CDS-5UTR	ENST00000245615	ENST00000449561		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000391754	ENST00000316219		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000391754	ENST00000450632		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000391754	ENST00000345866		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000391754	ENST00000449561		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000474910	ENST00000316219		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000474910	ENST00000450632		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000474910	ENST00000345866		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
intron-5UTR	ENST00000474910	ENST00000449561		TCGA	LD	OV	TCGA-13-1404-01A	MBOAT7	chr19	54682482	-	LILRB5	chr19	54761107	-
5UTR-5UTR	ENST00000560302	ENST00000448182		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000560302	ENST00000260364		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000560302	ENST00000455873		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000560302	ENST00000388866		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000560302	ENST00000530406		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-intron	ENST00000560302	ENST00000525163		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000394518	ENST00000448182		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000394518	ENST00000260364		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000394518	ENST00000455873		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000394518	ENST00000388866		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000394518	ENST00000530406		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-intron	ENST00000394518	ENST00000525163		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000361243	ENST00000448182		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000361243	ENST00000260364		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000361243	ENST00000455873		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000361243	ENST00000388866		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-5UTR	ENST00000361243	ENST00000530406		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
5UTR-intron	ENST00000361243	ENST00000525163		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000560579	ENST00000448182		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000560579	ENST00000260364		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000560579	ENST00000455873		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000560579	ENST00000388866		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000560579	ENST00000530406		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-intron	ENST00000560579	ENST00000525163		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000394510	ENST00000448182		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000394510	ENST00000260364		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000394510	ENST00000455873		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000394510	ENST00000388866		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-5UTR	ENST00000394510	ENST00000530406		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
intron-intron	ENST00000394510	ENST00000525163		TCGA	LD	OV	TCGA-13-1405-01A	AKAP13	chr15	85924029	+	NOX5	chr15	69318868	+
In-frame	ENST00000220496	ENST00000361937		TCGA	LD	OV	TCGA-13-1405-01A	DNAJC17	chr15	41065925	-	INO80	chr15	41297885	-
In-frame	ENST00000220496	ENST00000401393		TCGA	LD	OV	TCGA-13-1405-01A	DNAJC17	chr15	41065925	-	INO80	chr15	41297885	-
5CDS-intron	ENST00000220496	ENST00000561244		TCGA	LD	OV	TCGA-13-1405-01A	DNAJC17	chr15	41065925	-	INO80	chr15	41297885	-
intron-3CDS	ENST00000558727	ENST00000361937		TCGA	LD	OV	TCGA-13-1405-01A	DNAJC17	chr15	41065925	-	INO80	chr15	41297885	-
intron-3CDS	ENST00000558727	ENST00000401393		TCGA	LD	OV	TCGA-13-1405-01A	DNAJC17	chr15	41065925	-	INO80	chr15	41297885	-
intron-intron	ENST00000558727	ENST00000561244		TCGA	LD	OV	TCGA-13-1405-01A	DNAJC17	chr15	41065925	-	INO80	chr15	41297885	-
5UTR-3CDS	ENST00000202028	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
5UTR-3CDS	ENST00000373950	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
5UTR-3CDS	ENST00000441639	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
intron-3CDS	ENST00000373946	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
intron-3CDS	ENST00000338074	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
intron-3CDS	ENST00000373941	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
intron-3CDS	ENST00000479336	ENST00000318351		TCGA	LD	OV	TCGA-13-1405-01A	EPB41L1	chr20	34700402	+	HTR3C	chr3	183773100	+
intron-5UTR	ENST00000311172	ENST00000306960		TCGA	LD	OV	TCGA-13-1405-01A	FCHSD2	chr11	72851076	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000409314	ENST00000306960		TCGA	LD	OV	TCGA-13-1405-01A	FCHSD2	chr11	72851076	-	CHRM1	chr11	62678650	-
5CDS-5UTR	ENST00000409418	ENST00000306960		TCGA	LD	OV	TCGA-13-1405-01A	FCHSD2	chr11	72851076	-	CHRM1	chr11	62678650	-
5UTR-5UTR	ENST00000458644	ENST00000306960		TCGA	LD	OV	TCGA-13-1405-01A	FCHSD2	chr11	72851076	-	CHRM1	chr11	62678650	-
5UTR-5UTR	ENST00000409853	ENST00000306960		TCGA	LD	OV	TCGA-13-1405-01A	FCHSD2	chr11	72851076	-	CHRM1	chr11	62678650	-
intron-5UTR	ENST00000409263	ENST00000306960		TCGA	LD	OV	TCGA-13-1405-01A	FCHSD2	chr11	72851076	-	CHRM1	chr11	62678650	-
5CDS-intron	ENST00000340134	ENST00000530157		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000525451		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000308162		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000527344		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000531407		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000524553		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000534769		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
5CDS-intron	ENST00000340134	ENST00000531413		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000530157		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000525451		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000308162		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000527344		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000531407		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000524553		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000534769		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-intron	ENST00000482459	ENST00000531413		TCGA	LD	OV	TCGA-13-1405-01A	IFITM10	chr11	1768897	-	CFL1	chr11	65594080	-
intron-3CDS	ENST00000397910	ENST00000330266		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000397910	ENST00000405975		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000397910	ENST00000415080		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000397910	ENST00000405006		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000397910	ENST00000485353		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000397910	ENST00000402360		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000397910	ENST00000404790		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000397910	ENST00000403856		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000380951	ENST00000330266		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000380951	ENST00000405975		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000380951	ENST00000415080		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000380951	ENST00000405006		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000380951	ENST00000485353		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000380951	ENST00000402360		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000380951	ENST00000404790		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000380951	ENST00000403856		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000596956	ENST00000330266		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000596956	ENST00000405975		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000596956	ENST00000415080		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-3CDS	ENST00000596956	ENST00000405006		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000596956	ENST00000485353		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000596956	ENST00000402360		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000596956	ENST00000404790		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
intron-intron	ENST00000596956	ENST00000403856		TCGA	LD	OV	TCGA-13-1405-01A	MUC16	chr19	9064570	-	THADA	chr2	43732874	-
Frame-shit	ENST00000367866	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
Frame-shit	ENST00000367866	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5CDS-3UTR	ENST00000367866	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3CDS	ENST00000452019	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3CDS	ENST00000452019	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3UTR	ENST00000452019	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
Frame-shit	ENST00000429375	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
Frame-shit	ENST00000429375	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5CDS-3UTR	ENST00000429375	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
3UTR-3CDS	ENST00000367865	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
3UTR-3CDS	ENST00000367865	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
3UTR-3UTR	ENST00000367865	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3CDS	ENST00000541643	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3CDS	ENST00000541643	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3UTR	ENST00000541643	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3CDS	ENST00000420254	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3CDS	ENST00000420254	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5UTR-3UTR	ENST00000420254	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
intron-3CDS	ENST00000367862	ENST00000367872		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
intron-3CDS	ENST00000367862	ENST00000367870		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
intron-3UTR	ENST00000367862	ENST00000491055		TCGA	LD	OV	TCGA-13-1405-01A	POU2F1	chr1	167190195	+	MAEL	chr1	166960615	+
5CDS-5UTR	ENST00000367188	ENST00000367187		TCGA	LD	OV	TCGA-13-1405-01A	PPP1R15B	chr1	204378620	-	PIK3C2B	chr1	204439014	-
5CDS-5UTR	ENST00000367188	ENST00000424712		TCGA	LD	OV	TCGA-13-1405-01A	PPP1R15B	chr1	204378620	-	PIK3C2B	chr1	204439014	-
5CDS-intron	ENST00000367188	ENST00000496872		TCGA	LD	OV	TCGA-13-1405-01A	PPP1R15B	chr1	204378620	-	PIK3C2B	chr1	204439014	-
5CDS-intron	ENST00000394836	ENST00000530124		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000394836	ENST00000257247		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000394836	ENST00000525875		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000394836	ENST00000378024		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000301773	ENST00000530124		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000301773	ENST00000257247		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000301773	ENST00000525875		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5CDS-intron	ENST00000301773	ENST00000378024		TCGA	LD	OV	TCGA-13-1405-01A	RAB3IL1	chr11	61669914	-	AHNAK	chr11	62203955	-
5UTR-5UTR	ENST00000375114	ENST00000341567		TCGA	LD	OV	TCGA-13-1405-01A	RALY	chr20	32581937	+	TMEM248	chr7	66406835	+
5UTR-5UTR	ENST00000246194	ENST00000341567		TCGA	LD	OV	TCGA-13-1405-01A	RALY	chr20	32581937	+	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000493399	ENST00000341567		TCGA	LD	OV	TCGA-13-1405-01A	RALY	chr20	32581937	+	TMEM248	chr7	66406835	+
5CDS-intron	ENST00000369291	ENST00000357836		TCGA	LD	OV	TCGA-13-1405-01A	RNF115	chr1	145650540	-	HFE2	chr1	145398251	-
5CDS-intron	ENST00000369291	ENST00000336751		TCGA	LD	OV	TCGA-13-1405-01A	RNF115	chr1	145650540	-	HFE2	chr1	145398251	-
5CDS-intron	ENST00000369291	ENST00000497365		TCGA	LD	OV	TCGA-13-1405-01A	RNF115	chr1	145650540	-	HFE2	chr1	145398251	-
5CDS-intron	ENST00000369291	ENST00000475797		TCGA	LD	OV	TCGA-13-1405-01A	RNF115	chr1	145650540	-	HFE2	chr1	145398251	-
5CDS-5UTR	ENST00000216160	ENST00000270066		TCGA	LD	OV	TCGA-13-1405-01A	TAB1	chr22	39817976	+	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000216160	ENST00000601170		TCGA	LD	OV	TCGA-13-1405-01A	TAB1	chr22	39817976	+	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000331454	ENST00000270066		TCGA	LD	OV	TCGA-13-1405-01A	TAB1	chr22	39817976	+	SMG9	chr19	44254899	-
5CDS-5UTR	ENST00000331454	ENST00000601170		TCGA	LD	OV	TCGA-13-1405-01A	TAB1	chr22	39817976	+	SMG9	chr19	44254899	-
intron-5UTR	ENST00000488859	ENST00000270066		TCGA	LD	OV	TCGA-13-1405-01A	TAB1	chr22	39817976	+	SMG9	chr19	44254899	-
intron-5UTR	ENST00000488859	ENST00000601170		TCGA	LD	OV	TCGA-13-1405-01A	TAB1	chr22	39817976	+	SMG9	chr19	44254899	-
5UTR-5UTR	ENST00000341567	ENST00000375114		TCGA	LD	OV	TCGA-13-1405-01A	TMEM248	chr7	66386448	+	RALY	chr20	32619328	+
5UTR-5UTR	ENST00000341567	ENST00000246194		TCGA	LD	OV	TCGA-13-1405-01A	TMEM248	chr7	66386448	+	RALY	chr20	32619328	+
5UTR-intron	ENST00000341567	ENST00000493399		TCGA	LD	OV	TCGA-13-1405-01A	TMEM248	chr7	66386448	+	RALY	chr20	32619328	+
Frame-shit	ENST00000371497	ENST00000374820		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
Frame-shit	ENST00000371497	ENST00000452740		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
5CDS-intron	ENST00000371497	ENST00000480175		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
Frame-shit	ENST00000603338	ENST00000374820		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
Frame-shit	ENST00000603338	ENST00000452740		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
5CDS-intron	ENST00000603338	ENST00000480175		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
Frame-shit	ENST00000329613	ENST00000374820		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
In-frame	ENST00000329613	ENST00000452740		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
5CDS-intron	ENST00000329613	ENST00000480175		TCGA	LD	OV	TCGA-13-1405-01A	TSHZ2	chr20	51872983	+	PIGU	chr20	33245048	-
5UTR-intron	ENST00000370794	ENST00000489495		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370794	ENST00000370768		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370794	ENST00000370767		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370794	ENST00000436586		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
intron-intron	ENST00000357428	ENST00000489495		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
intron-intron	ENST00000357428	ENST00000370768		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
intron-intron	ENST00000357428	ENST00000370767		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
intron-intron	ENST00000357428	ENST00000436586		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370793	ENST00000489495		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370793	ENST00000370768		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370793	ENST00000370767		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370793	ENST00000436586		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370792	ENST00000489495		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370792	ENST00000370768		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370792	ENST00000370767		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000370792	ENST00000436586		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000528150	ENST00000489495		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000528150	ENST00000370768		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000528150	ENST00000370767		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5UTR-intron	ENST00000528150	ENST00000436586		TCGA	LD	OV	TCGA-13-1405-01A	USP33	chr1	78225328	-	FUBP1	chr1	78435699	-
5CDS-5UTR	ENST00000561924	ENST00000360461		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000561924	ENST00000427155		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000561924	ENST00000379344		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000561924	ENST00000450733		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-5UTR	ENST00000290858	ENST00000360461		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000290858	ENST00000427155		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000290858	ENST00000379344		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000290858	ENST00000450733		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-5UTR	ENST00000412916	ENST00000360461		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000412916	ENST00000427155		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000412916	ENST00000379344		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
5CDS-intron	ENST00000412916	ENST00000450733		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
intron-5UTR	ENST00000568858	ENST00000360461		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
intron-intron	ENST00000568858	ENST00000427155		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
intron-intron	ENST00000568858	ENST00000379344		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
intron-intron	ENST00000568858	ENST00000450733		TCGA	LD	OV	TCGA-13-1407-01A	CBFB	chr16	67116211	+	PLEKHG4	chr16	67312644	+
In-frame	ENST00000379068	ENST00000378482		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379068	ENST00000422612		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379068	ENST00000545599		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379068	ENST00000286824		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000379068	ENST00000488893		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379059	ENST00000378482		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379059	ENST00000422612		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379059	ENST00000545599		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000379059	ENST00000286824		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000379059	ENST00000488893		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000493342	ENST00000378482		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000493342	ENST00000422612		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000493342	ENST00000545599		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000493342	ENST00000286824		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000493342	ENST00000488893		TCGA	LD	OV	TCGA-13-1407-01A	POLA1	chrX	24767109	+	TSPAN7	chrX	38525375	+
Frame-shit	ENST00000424629	ENST00000395808		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000424629	ENST00000589119		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000424629	ENST00000312090		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000424629	ENST00000269814		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000424629	ENST00000325464		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5CDS-intron	ENST00000424629	ENST00000606828		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000302851	ENST00000395808		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000302851	ENST00000589119		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000302851	ENST00000312090		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
In-frame	ENST00000302851	ENST00000269814		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000302851	ENST00000325464		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5CDS-intron	ENST00000302851	ENST00000606828		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000326044	ENST00000395808		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000326044	ENST00000589119		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000326044	ENST00000312090		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
In-frame	ENST00000326044	ENST00000269814		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
Frame-shit	ENST00000326044	ENST00000325464		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5CDS-intron	ENST00000326044	ENST00000606828		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000354661	ENST00000395808		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000354661	ENST00000589119		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000354661	ENST00000312090		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000354661	ENST00000269814		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000354661	ENST00000325464		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-intron	ENST00000354661	ENST00000606828		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000495503	ENST00000395808		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000495503	ENST00000589119		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000495503	ENST00000312090		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000495503	ENST00000269814		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-3CDS	ENST00000495503	ENST00000325464		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
5UTR-intron	ENST00000495503	ENST00000606828		TCGA	LD	OV	TCGA-13-1409-01A	ZNF561	chr19	9727721	-	MED16	chr19	871253	-
In-frame	ENST00000262948	ENST00000341500		TCGA	LD	OV	TCGA-13-1410-01A	MAP2K2	chr19	4110507	-	INSR	chr19	7132328	-
In-frame	ENST00000262948	ENST00000302850		TCGA	LD	OV	TCGA-13-1410-01A	MAP2K2	chr19	4110507	-	INSR	chr19	7132328	-
Frame-shit	ENST00000394867	ENST00000341500		TCGA	LD	OV	TCGA-13-1410-01A	MAP2K2	chr19	4110507	-	INSR	chr19	7132328	-
Frame-shit	ENST00000394867	ENST00000302850		TCGA	LD	OV	TCGA-13-1410-01A	MAP2K2	chr19	4110507	-	INSR	chr19	7132328	-
5UTR-3CDS	ENST00000599345	ENST00000341500		TCGA	LD	OV	TCGA-13-1410-01A	MAP2K2	chr19	4110507	-	INSR	chr19	7132328	-
5UTR-3CDS	ENST00000599345	ENST00000302850		TCGA	LD	OV	TCGA-13-1410-01A	MAP2K2	chr19	4110507	-	INSR	chr19	7132328	-
intron-3CDS	ENST00000529490	ENST00000524140		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529490	ENST00000549814		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529490	ENST00000379808		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529490	ENST00000523826		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529490	ENST00000552788		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529490	ENST00000339803		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-3CDS	ENST00000317040	ENST00000524140		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000317040	ENST00000549814		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000317040	ENST00000379808		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000317040	ENST00000523826		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000317040	ENST00000552788		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000317040	ENST00000339803		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-3CDS	ENST00000392702	ENST00000524140		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000392702	ENST00000549814		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000392702	ENST00000379808		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000392702	ENST00000523826		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000392702	ENST00000552788		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000392702	ENST00000339803		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-3CDS	ENST00000529939	ENST00000524140		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529939	ENST00000549814		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529939	ENST00000379808		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529939	ENST00000523826		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529939	ENST00000552788		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000529939	ENST00000339803		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-3CDS	ENST00000528515	ENST00000524140		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000528515	ENST00000549814		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000528515	ENST00000379808		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000528515	ENST00000523826		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000528515	ENST00000552788		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000528515	ENST00000339803		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-3CDS	ENST00000543795	ENST00000524140		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000543795	ENST00000549814		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000543795	ENST00000379808		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000543795	ENST00000523826		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000543795	ENST00000552788		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
intron-intron	ENST00000543795	ENST00000339803		TCGA	LD	OV	TCGA-13-1410-01A	MVB12A	chr19	17524114	+	NWD1	chr19	16910697	+
Frame-shit	ENST00000599117	ENST00000269881		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
5CDS-intron	ENST00000599117	ENST00000602234		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
Frame-shit	ENST00000432763	ENST00000269881		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
5CDS-intron	ENST00000432763	ENST00000602234		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
Frame-shit	ENST00000402194	ENST00000269881		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
5CDS-intron	ENST00000402194	ENST00000602234		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
Frame-shit	ENST00000359191	ENST00000269881		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
5CDS-intron	ENST00000359191	ENST00000602234		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
Frame-shit	ENST00000598725	ENST00000269881		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
5CDS-intron	ENST00000598725	ENST00000602234		TCGA	LD	OV	TCGA-13-1410-01A	SUPT5H	chr19	39936605	+	CALR3	chr19	16601381	-
intron-3CDS	ENST00000310998	ENST00000398174		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000310998	ENST00000340852		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000310998	ENST00000335574		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000310998	ENST00000376127		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-intron	ENST00000310998	ENST00000492709		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000535842	ENST00000398174		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000535842	ENST00000340852		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000535842	ENST00000335574		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000535842	ENST00000376127		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-intron	ENST00000535842	ENST00000492709		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375921	ENST00000398174		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375921	ENST00000340852		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375921	ENST00000335574		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375921	ENST00000376127		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-intron	ENST00000375921	ENST00000492709		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375938	ENST00000398174		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375938	ENST00000340852		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375938	ENST00000335574		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-3CDS	ENST00000375938	ENST00000376127		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
intron-intron	ENST00000375938	ENST00000492709		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
In-frame	ENST00000375934	ENST00000398174		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
In-frame	ENST00000375934	ENST00000340852		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
In-frame	ENST00000375934	ENST00000335574		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
In-frame	ENST00000375934	ENST00000376127		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
5CDS-intron	ENST00000375934	ENST00000492709		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
5UTR-3CDS	ENST00000375922	ENST00000398174		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
5UTR-3CDS	ENST00000375922	ENST00000340852		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
5UTR-3CDS	ENST00000375922	ENST00000335574		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
5UTR-3CDS	ENST00000375922	ENST00000376127		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
5UTR-intron	ENST00000375922	ENST00000492709		TCGA	LD	OV	TCGA-13-1410-01A	TTLL9	chr20	30467700	+	HM13	chr20	30125982	+
In-frame	ENST00000595437	ENST00000376503		TCGA	LD	OV	TCGA-13-1411-01A	FARP1	chr13	99064288	+	SLC15A1	chr13	99340831	-
In-frame	ENST00000376586	ENST00000376503		TCGA	LD	OV	TCGA-13-1411-01A	FARP1	chr13	99064288	+	SLC15A1	chr13	99340831	-
In-frame	ENST00000319562	ENST00000376503		TCGA	LD	OV	TCGA-13-1411-01A	FARP1	chr13	99064288	+	SLC15A1	chr13	99340831	-
intron-3CDS	ENST00000376581	ENST00000376503		TCGA	LD	OV	TCGA-13-1411-01A	FARP1	chr13	99064288	+	SLC15A1	chr13	99340831	-
intron-3CDS	ENST00000593990	ENST00000376503		TCGA	LD	OV	TCGA-13-1411-01A	FARP1	chr13	99064288	+	SLC15A1	chr13	99340831	-
intron-intron	ENST00000521764	ENST00000597933		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
intron-intron	ENST00000521764	ENST00000602122		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
intron-intron	ENST00000521764	ENST00000361790		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
intron-intron	ENST00000521764	ENST00000360798		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
intron-intron	ENST00000521764	ENST00000354900		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
intron-intron	ENST00000521764	ENST00000347609		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
intron-intron	ENST00000521764	ENST00000427250		TCGA	LD	OV	TCGA-13-1411-01A	NACA2	chr17	59668174	-	LSR	chr19	35757332	+
In-frame	ENST00000306125	ENST00000545770		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000306125	ENST00000443990		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000306125	ENST00000432035		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
In-frame	ENST00000414533	ENST00000545770		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000414533	ENST00000443990		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000414533	ENST00000432035		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5UTR-3CDS	ENST00000470225	ENST00000545770		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5UTR-5UTR	ENST00000470225	ENST00000443990		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5UTR-5UTR	ENST00000470225	ENST00000432035		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
Frame-shit	ENST00000420147	ENST00000545770		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000420147	ENST00000443990		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000420147	ENST00000432035		TCGA	LD	OV	TCGA-13-1411-01A	QARS	chr3	49138788	-	C3orf84	chr3	49215971	-
5UTR-intron	ENST00000442114	ENST00000305978		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
5UTR-5UTR	ENST00000442114	ENST00000373991		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
5CDS-intron	ENST00000336600	ENST00000305978		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
5CDS-5UTR	ENST00000336600	ENST00000373991		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
5CDS-intron	ENST00000439969	ENST00000305978		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
5CDS-5UTR	ENST00000439969	ENST00000373991		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
3UTR-intron	ENST00000448947	ENST00000305978		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
3UTR-5UTR	ENST00000448947	ENST00000373991		TCGA	LD	OV	TCGA-13-1481-01A	C6orf223	chr6	43968437	+	SCAND1	chr20	34542613	-
intron-3CDS	ENST00000585682	ENST00000390242		TCGA	LD	OV	TCGA-13-1481-01A	FAM198B	chr4	159046787	-	IGKJ1	chr2	89161431	-
intron-3CDS	ENST00000296530	ENST00000390242		TCGA	LD	OV	TCGA-13-1481-01A	FAM198B	chr4	159046787	-	IGKJ1	chr2	89161431	-
intron-3CDS	ENST00000393807	ENST00000390242		TCGA	LD	OV	TCGA-13-1481-01A	FAM198B	chr4	159046787	-	IGKJ1	chr2	89161431	-
intron-3CDS	ENST00000589306	ENST00000390242		TCGA	LD	OV	TCGA-13-1481-01A	FAM198B	chr4	159046787	-	IGKJ1	chr2	89161431	-
intron-3CDS	ENST00000592057	ENST00000390242		TCGA	LD	OV	TCGA-13-1481-01A	FAM198B	chr4	159046787	-	IGKJ1	chr2	89161431	-
Frame-shit	ENST00000254108	ENST00000543774		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000254108	ENST00000448516		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000254108	ENST00000219797		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000380244	ENST00000543774		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000380244	ENST00000448516		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000380244	ENST00000219797		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000568685	ENST00000543774		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000568685	ENST00000448516		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000568685	ENST00000219797		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
intron-3CDS	ENST00000474990	ENST00000543774		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
intron-3CDS	ENST00000474990	ENST00000448516		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
intron-3CDS	ENST00000474990	ENST00000219797		TCGA	LD	OV	TCGA-13-1481-01A	FUS	chr16	31191548	+	KAT8	chr16	31138356	+
Frame-shit	ENST00000413379	ENST00000543252		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000413379	ENST00000344138		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413379	ENST00000540310		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000413379	ENST00000478445		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413379	ENST00000544756		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413379	ENST00000399090		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000413379	ENST00000407075		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000540850	ENST00000543252		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-3CDS	ENST00000540850	ENST00000344138		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000540850	ENST00000540310		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-3UTR	ENST00000540850	ENST00000478445		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000540850	ENST00000544756		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000540850	ENST00000399090		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
intron-intron	ENST00000540850	ENST00000407075		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000598840	ENST00000543252		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000598840	ENST00000344138		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000598840	ENST00000540310		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000598840	ENST00000478445		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000598840	ENST00000544756		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000598840	ENST00000399090		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000598840	ENST00000407075		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000270225	ENST00000543252		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000270225	ENST00000344138		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000270225	ENST00000540310		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000270225	ENST00000478445		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000270225	ENST00000544756		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000270225	ENST00000399090		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000270225	ENST00000407075		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000392776	ENST00000543252		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
Frame-shit	ENST00000392776	ENST00000344138		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000392776	ENST00000540310		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-3UTR	ENST00000392776	ENST00000478445		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000392776	ENST00000544756		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000392776	ENST00000399090		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000392776	ENST00000407075		TCGA	LD	OV	TCGA-13-1481-01A	SAE1	chr19	47634285	+	GRAP2	chr22	40351823	+
5CDS-intron	ENST00000320476	ENST00000419152		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000532400		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000532741		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000317198		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000526838		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000442189		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000528610		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000423316		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000395119		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000529272		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000531621		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000524624		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000320476	ENST00000531770		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000419152		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000532400		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000532741		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000317198		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000526838		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000442189		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000528610		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000423316		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000395119		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000529272		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000531621		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000524624		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000356994	ENST00000531770		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000419152		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000532400		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000532741		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000317198		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000526838		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000442189		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000528610		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000423316		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000395119		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000529272		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000531621		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000524624		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000377533	ENST00000531770		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000419152		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000532400		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000532741		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000317198		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000526838		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000442189		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000528610		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000423316		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000395119		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000529272		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000531621		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000524624		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
intron-intron	ENST00000546337	ENST00000531770		TCGA	LD	OV	TCGA-13-1481-01A	SCRIB	chr8	144890779	-	EEF1D	chr8	144672251	-
In-frame	ENST00000401073	ENST00000414241		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
In-frame	ENST00000401073	ENST00000373493		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
5CDS-intron	ENST00000401073	ENST00000524393		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
5CDS-intron	ENST00000401073	ENST00000544435		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
5CDS-intron	ENST00000401073	ENST00000373485		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
5CDS-intron	ENST00000401073	ENST00000458695		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-3CDS	ENST00000373481	ENST00000414241		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-3CDS	ENST00000373481	ENST00000373493		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373481	ENST00000524393		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373481	ENST00000544435		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373481	ENST00000373485		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373481	ENST00000458695		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-3CDS	ENST00000294521	ENST00000414241		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-3CDS	ENST00000294521	ENST00000373493		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000294521	ENST00000524393		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000294521	ENST00000544435		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000294521	ENST00000373485		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000294521	ENST00000458695		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-3CDS	ENST00000373480	ENST00000414241		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-3CDS	ENST00000373480	ENST00000373493		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373480	ENST00000524393		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373480	ENST00000544435		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373480	ENST00000373485		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
intron-intron	ENST00000373480	ENST00000458695		TCGA	LD	OV	TCGA-13-1483-01A	KIAA1522	chr1	33207790	+	RBBP4	chr1	33133826	+
In-frame	ENST00000340647	ENST00000369449		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
5CDS-5UTR	ENST00000340647	ENST00000465553		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
In-frame	ENST00000330045	ENST00000369449		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
5CDS-5UTR	ENST00000330045	ENST00000465553		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
In-frame	ENST00000369459	ENST00000369449		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
5CDS-5UTR	ENST00000369459	ENST00000465553		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
In-frame	ENST00000369462	ENST00000369449		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
5CDS-5UTR	ENST00000369462	ENST00000465553		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
In-frame	ENST00000399042	ENST00000369449		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
5CDS-5UTR	ENST00000399042	ENST00000465553		TCGA	LD	OV	TCGA-13-1487-01A	BRCC3	chrX	154319114	+	CLIC2	chrX	154509357	-
Frame-shit	ENST00000366615	ENST00000366618		TCGA	LD	OV	TCGA-13-1487-01A	COA6	chr1	234510135	+	SLC35F3	chr1	234444847	+
Frame-shit	ENST00000366615	ENST00000366617		TCGA	LD	OV	TCGA-13-1487-01A	COA6	chr1	234510135	+	SLC35F3	chr1	234444847	+
Frame-shit	ENST00000366613	ENST00000366618		TCGA	LD	OV	TCGA-13-1487-01A	COA6	chr1	234510135	+	SLC35F3	chr1	234444847	+
Frame-shit	ENST00000366613	ENST00000366617		TCGA	LD	OV	TCGA-13-1487-01A	COA6	chr1	234510135	+	SLC35F3	chr1	234444847	+
Frame-shit	ENST00000366612	ENST00000366618		TCGA	LD	OV	TCGA-13-1487-01A	COA6	chr1	234510135	+	SLC35F3	chr1	234444847	+
Frame-shit	ENST00000366612	ENST00000366617		TCGA	LD	OV	TCGA-13-1487-01A	COA6	chr1	234510135	+	SLC35F3	chr1	234444847	+
5CDS-5UTR	ENST00000360614	ENST00000381614		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000360614	ENST00000381624		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-intron	ENST00000360614	ENST00000309164		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000585374	ENST00000381614		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000585374	ENST00000381624		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-intron	ENST00000585374	ENST00000309164		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000593119	ENST00000381614		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000593119	ENST00000381624		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-intron	ENST00000593119	ENST00000309164		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
intron-5UTR	ENST00000540670	ENST00000381614		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
intron-5UTR	ENST00000540670	ENST00000381624		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
intron-intron	ENST00000540670	ENST00000309164		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000590729	ENST00000381614		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-5UTR	ENST00000590729	ENST00000381624		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5CDS-intron	ENST00000590729	ENST00000309164		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5UTR-5UTR	ENST00000590511	ENST00000381614		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5UTR-5UTR	ENST00000590511	ENST00000381624		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
5UTR-intron	ENST00000590511	ENST00000309164		TCGA	LD	OV	TCGA-13-1487-01A	LONP1	chr19	5719715	-	CATSPERD	chr19	5727279	+
Frame-shit	ENST00000373635	ENST00000448504		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
Frame-shit	ENST00000373635	ENST00000452479		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
5CDS-3UTR	ENST00000373635	ENST00000582154		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
Frame-shit	ENST00000308696	ENST00000448504		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
Frame-shit	ENST00000308696	ENST00000452479		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
5CDS-3UTR	ENST00000308696	ENST00000582154		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
Frame-shit	ENST00000409643	ENST00000448504		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
Frame-shit	ENST00000409643	ENST00000452479		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
5CDS-3UTR	ENST00000409643	ENST00000582154		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
intron-3CDS	ENST00000488354	ENST00000448504		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
intron-3CDS	ENST00000488354	ENST00000452479		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
intron-3UTR	ENST00000488354	ENST00000582154		TCGA	LD	OV	TCGA-13-1487-01A	PSMD1	chr2	231921755	+	ARSG	chr17	66416330	+
5UTR-3CDS	ENST00000395443	ENST00000297153		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-3CDS	ENST00000395443	ENST00000434837		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-3CDS	ENST00000395443	ENST00000505425		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-intron	ENST00000395443	ENST00000510077		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-3CDS	ENST00000357496	ENST00000297153		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-3CDS	ENST00000357496	ENST00000434837		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-3CDS	ENST00000357496	ENST00000505425		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
5UTR-intron	ENST00000357496	ENST00000510077		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-3CDS	ENST00000424300	ENST00000297153		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-3CDS	ENST00000424300	ENST00000434837		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-3CDS	ENST00000424300	ENST00000505425		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-intron	ENST00000424300	ENST00000510077		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-3CDS	ENST00000479449	ENST00000297153		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-3CDS	ENST00000479449	ENST00000434837		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-3CDS	ENST00000479449	ENST00000505425		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
intron-intron	ENST00000479449	ENST00000510077		TCGA	LD	OV	TCGA-13-1487-01A	QRICH1	chr3	49131345	-	MDGA1	chr6	37626195	-
In-frame	ENST00000355014	ENST00000471642		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000355014	ENST00000368336		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000355014	ENST00000343043		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000355014	ENST00000496863		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000355014	ENST00000535183		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000355014	ENST00000421487		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000355014	ENST00000465375		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368285	ENST00000471642		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368285	ENST00000368336		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368285	ENST00000343043		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368285	ENST00000496863		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368285	ENST00000535183		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368285	ENST00000421487		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368285	ENST00000465375		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368284	ENST00000471642		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368284	ENST00000368336		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368284	ENST00000343043		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368284	ENST00000496863		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368284	ENST00000535183		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368284	ENST00000421487		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368284	ENST00000465375		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368286	ENST00000471642		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368286	ENST00000368336		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368286	ENST00000343043		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368286	ENST00000496863		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368286	ENST00000535183		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368286	ENST00000421487		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368286	ENST00000465375		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368282	ENST00000471642		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368282	ENST00000368336		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
In-frame	ENST00000368282	ENST00000343043		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368282	ENST00000496863		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368282	ENST00000535183		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368282	ENST00000421487		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
5CDS-intron	ENST00000368282	ENST00000465375		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-3CDS	ENST00000487358	ENST00000471642		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-3CDS	ENST00000487358	ENST00000368336		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-3CDS	ENST00000487358	ENST00000343043		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-intron	ENST00000487358	ENST00000496863		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-intron	ENST00000487358	ENST00000535183		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-intron	ENST00000487358	ENST00000421487		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
3UTR-intron	ENST00000487358	ENST00000465375		TCGA	LD	OV	TCGA-13-1487-01A	SEMA4A	chr1	156132885	+	DAP3	chr1	155698833	+
Frame-shit	ENST00000361337	ENST00000514747		TCGA	LD	OV	TCGA-13-1487-01A	TOP1	chr20	39658095	+	FAM193B	chr5	176952206	-
Frame-shit	ENST00000361337	ENST00000329540		TCGA	LD	OV	TCGA-13-1487-01A	TOP1	chr20	39658095	+	FAM193B	chr5	176952206	-
Frame-shit	ENST00000361337	ENST00000443375		TCGA	LD	OV	TCGA-13-1487-01A	TOP1	chr20	39658095	+	FAM193B	chr5	176952206	-
5CDS-5UTR	ENST00000361337	ENST00000508298		TCGA	LD	OV	TCGA-13-1487-01A	TOP1	chr20	39658095	+	FAM193B	chr5	176952206	-
5CDS-intron	ENST00000548446	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548446	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548446	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548446	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548446	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000420353	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000420353	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000420353	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000420353	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000420353	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000415113	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000415113	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000415113	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000415113	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000415113	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000456903	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000456903	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000456903	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000456903	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000456903	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000548118	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548118	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548118	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548118	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000548118	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000591397	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000591397	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000591397	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000591397	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000591397	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000328463	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000328463	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000328463	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000328463	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
5CDS-5UTR	ENST00000328463	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
intron-intron	ENST00000546661	ENST00000550241		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000602871		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000394349		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000549164		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000338662		TCGA	LD	OV	TCGA-13-1488-01A	ATF7	chr12	53994737	-	ATP5G2	chr12	54066429	-
intron-intron	ENST00000384994	ENST00000265465		TCGA	LD	OV	TCGA-13-1488-01A	NEAT1	chr11	65201649	+	POLA2	chr11	65048425	+
intron-intron	ENST00000384994	ENST00000541089		TCGA	LD	OV	TCGA-13-1488-01A	NEAT1	chr11	65201649	+	POLA2	chr11	65048425	+
intron-intron	ENST00000384994	ENST00000534785		TCGA	LD	OV	TCGA-13-1488-01A	NEAT1	chr11	65201649	+	POLA2	chr11	65048425	+
5CDS-intron	ENST00000556468	ENST00000476882		TCGA	LD	OV	TCGA-13-1488-01A	PPAN	chr19	10217088	+	GIPC2	chr1	78601276	+
5CDS-intron	ENST00000556468	ENST00000370759		TCGA	LD	OV	TCGA-13-1488-01A	PPAN	chr19	10217088	+	GIPC2	chr1	78601276	+
5CDS-intron	ENST00000253107	ENST00000476882		TCGA	LD	OV	TCGA-13-1488-01A	PPAN	chr19	10217088	+	GIPC2	chr1	78601276	+
5CDS-intron	ENST00000253107	ENST00000370759		TCGA	LD	OV	TCGA-13-1488-01A	PPAN	chr19	10217088	+	GIPC2	chr1	78601276	+
intron-intron	ENST00000393793	ENST00000476882		TCGA	LD	OV	TCGA-13-1488-01A	PPAN	chr19	10217088	+	GIPC2	chr1	78601276	+
intron-intron	ENST00000393793	ENST00000370759		TCGA	LD	OV	TCGA-13-1488-01A	PPAN	chr19	10217088	+	GIPC2	chr1	78601276	+
Frame-shit	ENST00000424085	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000424085	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000257075	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000257075	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000373747	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000373747	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000426105	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000426105	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000440538	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000440538	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
In-frame	ENST00000373741	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000373741	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
Frame-shit	ENST00000423018	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000423018	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
In-frame	ENST00000373742	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000373742	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
intron-3CDS	ENST00000490546	ENST00000294507		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
intron-5UTR	ENST00000490546	ENST00000476492		TCGA	LD	OV	TCGA-13-1488-01A	PUM1	chr1	31532051	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000311672	ENST00000547002		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
5CDS-5UTR	ENST00000311672	ENST00000442892		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
5CDS-5UTR	ENST00000311672	ENST00000442218		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
5CDS-3UTR	ENST00000311672	ENST00000476104		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
3UTR-5UTR	ENST00000486951	ENST00000547002		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
3UTR-5UTR	ENST00000486951	ENST00000442892		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
3UTR-5UTR	ENST00000486951	ENST00000442218		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
3UTR-3UTR	ENST00000486951	ENST00000476104		TCGA	LD	OV	TCGA-13-1488-01A	UQCRH	chr1	46769492	+	SLC48A1	chr12	48172811	+
Frame-shit	ENST00000427277	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000427277	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000297954	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000297954	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000395475	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000395475	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
5UTR-3CDS	ENST00000356055	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
5UTR-3CDS	ENST00000356055	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000349097	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000349097	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000395477	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
Frame-shit	ENST00000395477	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
intron-3CDS	ENST00000471076	ENST00000375472		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
intron-3CDS	ENST00000471076	ENST00000375469		TCGA	LD	OV	TCGA-13-1488-01A	WNK2	chr9	96002258	+	SUSD3	chr9	95846819	+
intron-3CDS	ENST00000377387	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
In-frame	ENST00000377390	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
In-frame	ENST00000377394	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
In-frame	ENST00000227503	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
In-frame	ENST00000334944	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
5UTR-3CDS	ENST00000422298	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
intron-3CDS	ENST00000433274	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
intron-3CDS	ENST00000489544	ENST00000312134		TCGA	LD	OV	TCGA-13-1489-01A	SF1	chr11	64545834	-	CST6	chr11	65779657	+
intron-intron	ENST00000439040	ENST00000379542		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000491103		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000461342		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000475942		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000379530		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000473276		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000481240		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000439040	ENST00000467317		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000379542		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000491103		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000461342		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000475942		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000379530		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000473276		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000481240		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
intron-intron	ENST00000256031	ENST00000467317		TCGA	LD	OV	TCGA-13-1495-01A	ATP13A3	chr3	194206523	-	TMEM14B	chr6	10829240	+
5UTR-3CDS	ENST00000318978	ENST00000595483		TCGA	LD	OV	TCGA-13-1495-01A	CTXN1	chr19	7990852	-	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000318978	ENST00000263368		TCGA	LD	OV	TCGA-13-1495-01A	CTXN1	chr19	7990852	-	BLVRB	chr19	40964452	-
5CDS-3UTR	ENST00000446526	ENST00000392485		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
5CDS-3UTR	ENST00000446526	ENST00000359995		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
5CDS-3UTR	ENST00000446526	ENST00000508921		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
5UTR-3UTR	ENST00000324684	ENST00000392485		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
5UTR-3UTR	ENST00000324684	ENST00000359995		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
5UTR-3UTR	ENST00000324684	ENST00000508921		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
intron-3UTR	ENST00000588364	ENST00000392485		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
intron-3UTR	ENST00000588364	ENST00000359995		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
intron-3UTR	ENST00000588364	ENST00000508921		TCGA	LD	OV	TCGA-13-1495-01A	PRPSAP1	chr17	74344610	-	SRSF2	chr17	74731240	-
5UTR-3CDS	ENST00000392894	ENST00000305354		TCGA	LD	OV	TCGA-13-1495-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149192762	+
5UTR-3CDS	ENST00000344229	ENST00000305354		TCGA	LD	OV	TCGA-13-1495-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149192762	+
intron-3CDS	ENST00000361785	ENST00000305354		TCGA	LD	OV	TCGA-13-1495-01A	RNF13	chr3	149531140	+	TM4SF4	chr3	149192762	+
Frame-shit	ENST00000304056	ENST00000610140		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000304056	ENST00000381626		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000304056	ENST00000396152		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000304056	ENST00000242210		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000304056	ENST00000405342		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
Frame-shit	ENST00000304056	ENST00000409467		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
In-frame	ENST00000304056	ENST00000409787		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000610140		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000381626		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000396152		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000242210		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000405342		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000409467		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3CDS	ENST00000485611	ENST00000409787		TCGA	LD	OV	TCGA-13-1496-01A	KBTBD2	chr7	32919047	-	NT5C3A	chr7	33057213	-
intron-3UTR	ENST00000466801	ENST00000460833		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000466801	ENST00000474768		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000466801	ENST00000481312		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000466801	ENST00000485174		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409321	ENST00000460833		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409321	ENST00000474768		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409321	ENST00000481312		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-intron	ENST00000409321	ENST00000485174		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409115	ENST00000460833		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409115	ENST00000474768		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409115	ENST00000481312		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-intron	ENST00000409115	ENST00000485174		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000341369	ENST00000460833		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000341369	ENST00000474768		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000341369	ENST00000481312		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-intron	ENST00000341369	ENST00000485174		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409683	ENST00000460833		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409683	ENST00000474768		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-3UTR	ENST00000409683	ENST00000481312		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
5CDS-intron	ENST00000409683	ENST00000485174		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000410064	ENST00000460833		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000410064	ENST00000474768		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-3UTR	ENST00000410064	ENST00000481312		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
intron-intron	ENST00000410064	ENST00000485174		TCGA	LD	OV	TCGA-13-1496-01A	PTMA	chr2	232573461	+	ADAMTS9-AS2	chr3	64785141	+
In-frame	ENST00000367843	ENST00000302787		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
5CDS-5UTR	ENST00000367843	ENST00000512189		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
In-frame	ENST00000432587	ENST00000302787		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
5CDS-5UTR	ENST00000432587	ENST00000512189		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
In-frame	ENST00000312263	ENST00000302787		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
5CDS-5UTR	ENST00000312263	ENST00000512189		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
In-frame	ENST00000367840	ENST00000302787		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
5CDS-5UTR	ENST00000367840	ENST00000512189		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
intron-3CDS	ENST00000470919	ENST00000302787		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
intron-5UTR	ENST00000470919	ENST00000512189		TCGA	LD	OV	TCGA-13-1497-01A	DCAF6	chr1	167906246	+	LETM1	chr4	1850936	-
Frame-shit	ENST00000261942	ENST00000311506		TCGA	LD	OV	TCGA-13-1497-01A	FAF2	chr5	175875471	+	METTL2A	chr17	60522198	+
intron-3CDS	ENST00000510446	ENST00000311506		TCGA	LD	OV	TCGA-13-1497-01A	FAF2	chr5	175875471	+	METTL2A	chr17	60522198	+
5UTR-intron	ENST00000449098	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000449098	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000449098	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000449098	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000449098	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000320084	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000320084	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000320084	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000320084	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000320084	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000336053	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000336053	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000336053	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000336053	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000336053	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554969	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554969	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554969	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000554969	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554969	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556142	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556142	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556142	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000556142	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556142	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554455	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554455	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554455	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000554455	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000554455	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000430246	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000430246	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000430246	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000430246	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000430246	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553753	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553753	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553753	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000553753	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553753	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555914	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555914	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555914	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000555914	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555914	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555309	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555309	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555309	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000555309	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555309	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556628	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556628	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556628	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000556628	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556628	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555883	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555883	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555883	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000555883	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000555883	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556513	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556513	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556513	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000556513	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000556513	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000557201	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000557201	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000557201	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000557201	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000557201	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553300	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553300	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553300	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000553300	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000553300	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000556897	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000556897	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000556897	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-5UTR	ENST00000556897	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
intron-intron	ENST00000556897	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000420743	ENST00000535628		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000420743	ENST00000588982		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000420743	ENST00000586438		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-5UTR	ENST00000420743	ENST00000590800		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
5UTR-intron	ENST00000420743	ENST00000332053		TCGA	LD	OV	TCGA-13-1497-01A	HNRNPC	chr14	21737457	-	ZBTB7C	chr18	45712366	-
Frame-shit	ENST00000398246	ENST00000390477		TCGA	LD	OV	TCGA-13-1497-01A	LONRF1	chr8	12598383	-	TRDC	chr14	22931924	+
intron-3CDS	ENST00000525024	ENST00000390477		TCGA	LD	OV	TCGA-13-1497-01A	LONRF1	chr8	12598383	-	TRDC	chr14	22931924	+
5UTR-3CDS	ENST00000533751	ENST00000390477		TCGA	LD	OV	TCGA-13-1497-01A	LONRF1	chr8	12598383	-	TRDC	chr14	22931924	+
5UTR-3CDS	ENST00000530693	ENST00000390477		TCGA	LD	OV	TCGA-13-1497-01A	LONRF1	chr8	12598383	-	TRDC	chr14	22931924	+
In-frame	ENST00000545260	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000545260	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000545260	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000545260	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000545693	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000545693	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000545693	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000545693	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000350537	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000350537	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000350537	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000350537	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000346874	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000346874	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000346874	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000346874	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374789	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374789	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374789	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000374789	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374790	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374790	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374790	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000374790	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374794	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374794	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374794	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000374794	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374788	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374788	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374788	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000374788	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000466092	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000466092	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000466092	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-5UTR	ENST00000466092	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374776	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374776	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374776	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000374776	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000340077	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000340077	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000340077	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000340077	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000544292	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000544292	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000544292	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-5UTR	ENST00000544292	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374773	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374773	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000374773	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
5CDS-5UTR	ENST00000374773	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000374768	ENST00000331320		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000374768	ENST00000406191		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-3CDS	ENST00000374768	ENST00000405646		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
intron-5UTR	ENST00000374768	ENST00000435036		TCGA	LD	OV	TCGA-13-1497-01A	PARD3	chr10	34985246	-	MTA1	chr14	105929830	+
In-frame	ENST00000287878	ENST00000413040		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
In-frame	ENST00000287878	ENST00000568733		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000287878	ENST00000566856		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000287878	ENST00000355851		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-intron	ENST00000287878	ENST00000477666		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
Frame-shit	ENST00000418337	ENST00000413040		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
Frame-shit	ENST00000418337	ENST00000568733		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000418337	ENST00000566856		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000418337	ENST00000355851		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-intron	ENST00000418337	ENST00000477666		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
In-frame	ENST00000433631	ENST00000413040		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
In-frame	ENST00000433631	ENST00000568733		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000433631	ENST00000566856		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000433631	ENST00000355851		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-intron	ENST00000433631	ENST00000477666		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
In-frame	ENST00000492843	ENST00000413040		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
In-frame	ENST00000492843	ENST00000568733		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000492843	ENST00000566856		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000492843	ENST00000355851		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-intron	ENST00000492843	ENST00000477666		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
Frame-shit	ENST00000392801	ENST00000413040		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
Frame-shit	ENST00000392801	ENST00000568733		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000392801	ENST00000566856		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-5UTR	ENST00000392801	ENST00000355851		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
5CDS-intron	ENST00000392801	ENST00000477666		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
intron-3CDS	ENST00000461529	ENST00000413040		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
intron-3CDS	ENST00000461529	ENST00000568733		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
intron-5UTR	ENST00000461529	ENST00000566856		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
intron-5UTR	ENST00000461529	ENST00000355851		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
intron-intron	ENST00000461529	ENST00000477666		TCGA	LD	OV	TCGA-13-1497-01A	PRKAG2	chr7	151329155	-	NUB1	chr7	151042434	+
In-frame	ENST00000305626	ENST00000280551		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
In-frame	ENST00000305626	ENST00000379735		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
In-frame	ENST00000305626	ENST00000429811		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
5CDS-5UTR	ENST00000305626	ENST00000505134		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
5CDS-5UTR	ENST00000305626	ENST00000511481		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
5CDS-5UTR	ENST00000305626	ENST00000419654		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
intron-3CDS	ENST00000507271	ENST00000280551		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
intron-3CDS	ENST00000507271	ENST00000379735		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
intron-3CDS	ENST00000507271	ENST00000429811		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
intron-5UTR	ENST00000507271	ENST00000505134		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
intron-5UTR	ENST00000507271	ENST00000511481		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
intron-5UTR	ENST00000507271	ENST00000419654		TCGA	LD	OV	TCGA-13-1497-01A	RAB33B	chr4	140375598	+	SEC24D	chr4	119666215	-
5CDS-5UTR	ENST00000455789	ENST00000237889		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000455789	ENST00000433898		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000455789	ENST00000454214		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000310015	ENST00000237889		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000310015	ENST00000433898		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000310015	ENST00000454214		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000418194	ENST00000237889		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000418194	ENST00000433898		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
5CDS-5UTR	ENST00000418194	ENST00000454214		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
intron-5UTR	ENST00000483084	ENST00000237889		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
intron-5UTR	ENST00000483084	ENST00000433898		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
intron-5UTR	ENST00000483084	ENST00000454214		TCGA	LD	OV	TCGA-13-1497-01A	SP3	chr2	174819601	-	NDUFB3	chr2	201943604	+
Frame-shit	ENST00000367723	ENST00000358155		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000367733		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000355305		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000367731		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000367723	ENST00000520906		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
Frame-shit	ENST00000608151	ENST00000358155		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000367733		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000355305		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000367731		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000608151	ENST00000520906		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
Frame-shit	ENST00000610051	ENST00000358155		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000367733		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000355305		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000367731		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000610051	ENST00000520906		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
Frame-shit	ENST00000263688	ENST00000358155		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000367733		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000355305		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000367731		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
5CDS-intron	ENST00000263688	ENST00000520906		TCGA	LD	OV	TCGA-13-1497-01A	SUCO	chr1	172539870	+	DNM3	chr1	172348158	+
Frame-shit	ENST00000355238	ENST00000265362		TCGA	LD	OV	TCGA-13-1497-01A	SYNCRIP	chr6	86346685	-	SEMA3A	chr7	83739905	-
Frame-shit	ENST00000355238	ENST00000436949		TCGA	LD	OV	TCGA-13-1497-01A	SYNCRIP	chr6	86346685	-	SEMA3A	chr7	83739905	-
5CDS-intron	ENST00000355238	ENST00000471474		TCGA	LD	OV	TCGA-13-1497-01A	SYNCRIP	chr6	86346685	-	SEMA3A	chr7	83739905	-
Frame-shit	ENST00000369622	ENST00000265362		TCGA	LD	OV	TCGA-13-1497-01A	SYNCRIP	chr6	86346685	-	SEMA3A	chr7	83739905	-
Frame-shit	ENST00000369622	ENST00000436949		TCGA	LD	OV	TCGA-13-1497-01A	SYNCRIP	chr6	86346685	-	SEMA3A	chr7	83739905	-
5CDS-intron	ENST00000369622	ENST00000471474		TCGA	LD	OV	TCGA-13-1497-01A	SYNCRIP	chr6	86346685	-	SEMA3A	chr7	83739905	-
5UTR-3CDS	ENST00000368655	ENST00000314485		TCGA	LD	OV	TCGA-13-1498-01A	GATAD2B	chr1	153895209	-	IGSF8	chr1	160065036	-
5UTR-3CDS	ENST00000368655	ENST00000368086		TCGA	LD	OV	TCGA-13-1498-01A	GATAD2B	chr1	153895209	-	IGSF8	chr1	160065036	-
5UTR-5UTR	ENST00000368655	ENST00000460351		TCGA	LD	OV	TCGA-13-1498-01A	GATAD2B	chr1	153895209	-	IGSF8	chr1	160065036	-
In-frame	ENST00000262370	ENST00000444310		TCGA	LD	OV	TCGA-13-1498-01A	MGRN1	chr16	4702825	+	C16orf96	chr16	4643225	+
In-frame	ENST00000415496	ENST00000444310		TCGA	LD	OV	TCGA-13-1498-01A	MGRN1	chr16	4702825	+	C16orf96	chr16	4643225	+
In-frame	ENST00000399577	ENST00000444310		TCGA	LD	OV	TCGA-13-1498-01A	MGRN1	chr16	4702825	+	C16orf96	chr16	4643225	+
In-frame	ENST00000588994	ENST00000444310		TCGA	LD	OV	TCGA-13-1498-01A	MGRN1	chr16	4702825	+	C16orf96	chr16	4643225	+
In-frame	ENST00000586183	ENST00000444310		TCGA	LD	OV	TCGA-13-1498-01A	MGRN1	chr16	4702825	+	C16orf96	chr16	4643225	+
intron-3CDS	ENST00000588015	ENST00000444310		TCGA	LD	OV	TCGA-13-1498-01A	MGRN1	chr16	4702825	+	C16orf96	chr16	4643225	+
Frame-shit	ENST00000230449	ENST00000530927		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
Frame-shit	ENST00000230449	ENST00000380815		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
5CDS-intron	ENST00000230449	ENST00000467288		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
In-frame	ENST00000448181	ENST00000530927		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
In-frame	ENST00000448181	ENST00000380815		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
5CDS-intron	ENST00000448181	ENST00000467288		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
intron-3CDS	ENST00000475028	ENST00000530927		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
intron-3CDS	ENST00000475028	ENST00000380815		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
intron-intron	ENST00000475028	ENST00000467288		TCGA	LD	OV	TCGA-13-1501-01A	EXOC2	chr6	572520	-	GMDS	chr6	1742820	-
Frame-shit	ENST00000254480	ENST00000250498		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000254480	ENST00000489532		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000254480	ENST00000538631		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000254480	ENST00000543337		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5UTR-3CDS	ENST00000425518	ENST00000250498		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5UTR-intron	ENST00000425518	ENST00000489532		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5UTR-intron	ENST00000425518	ENST00000538631		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5UTR-intron	ENST00000425518	ENST00000543337		TCGA	LD	OV	TCGA-13-1501-01A	SMARCC1	chr3	47814307	-	DAD1	chr14	23044133	-
5CDS-5UTR	ENST00000252826	ENST00000586683		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000252445		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000587806		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000589171		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000591674		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000586120		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000590700		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252826	ENST00000591912		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000586683		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000252445		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000587806		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000589171		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000591674		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000586120		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000590700		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000427978	ENST00000591912		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000586683		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000252445		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000587806		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000589171		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000591674		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000586120		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000590700		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
5UTR-5UTR	ENST00000355712	ENST00000591912		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000586683		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000252445		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000587806		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000589171		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000591674		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000586120		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000590700		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000601347	ENST00000591912		TCGA	LD	OV	TCGA-13-1501-01A	TRPM4	chr19	49661516	+	ELOF1	chr19	11665180	-
intron-3CDS	ENST00000511642	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000511642	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000511642	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-intron	ENST00000511642	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000415497	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000415497	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000415497	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-intron	ENST00000415497	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000372988	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000372988	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000372988	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-intron	ENST00000372988	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000510503	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000510503	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000510503	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-intron	ENST00000510503	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000511686	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000511686	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000511686	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-intron	ENST00000511686	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000372991	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000372991	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000372991	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-intron	ENST00000372991	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000372987	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000372987	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000372987	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-intron	ENST00000372987	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000414200	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000414200	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-3CDS	ENST00000414200	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
intron-intron	ENST00000414200	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	CCND3	chr6	42016239	-	PPP2R5D	chr6	42957349	+
5UTR-3CDS	ENST00000595618	ENST00000215567		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000595618	ENST00000596073		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000595618	ENST00000600083		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000595618	ENST00000436007		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000595618	ENST00000596164		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000594824	ENST00000215567		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000594824	ENST00000596073		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000594824	ENST00000600083		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000594824	ENST00000436007		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000594824	ENST00000596164		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000397274	ENST00000215567		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000397274	ENST00000596073		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000397274	ENST00000600083		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000397274	ENST00000436007		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000397274	ENST00000596164		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000593411	ENST00000215567		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000593411	ENST00000596073		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000593411	ENST00000600083		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000593411	ENST00000436007		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000593411	ENST00000596164		TCGA	LD	OV	TCGA-13-1505-01A	MYO9B	chr19	17186684	+	TECR	chr19	14673337	+
5CDS-intron	ENST00000229179	ENST00000462284		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000356290		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000540827		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000258149		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000428863		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000393412		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000258148		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000544561		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000393410		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000393413		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000517852		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000545204		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000350057		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000360430		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000299252		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000348801		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000478070		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000229179	ENST00000544125		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000462284		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000356290		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000540827		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000258149		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000428863		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000393412		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000258148		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000544561		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000393410		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000393413		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000517852		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000545204		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000350057		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000360430		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000299252		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000348801		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000478070		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5UTR-intron	ENST00000378905	ENST00000544125		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000462284		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000356290		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000540827		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000258149		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000428863		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000393412		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000258148		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000544561		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000393410		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000393413		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000517852		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000545204		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000350057		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000360430		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000299252		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000348801		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000478070		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
5CDS-intron	ENST00000539906	ENST00000544125		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000462284		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000356290		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000540827		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000258149		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000428863		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000393412		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000258148		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000544561		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000393410		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000393413		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000517852		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000545204		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000350057		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000360430		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000299252		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000348801		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000478070		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
intron-intron	ENST00000401003	ENST00000544125		TCGA	LD	OV	TCGA-13-1505-01A	NUP107	chr12	69084526	+	MDM2	chr12	69242456	+
In-frame	ENST00000304611	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
In-frame	ENST00000304611	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
In-frame	ENST00000304611	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
5CDS-intron	ENST00000304611	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
In-frame	ENST00000244546	ENST00000485511		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
In-frame	ENST00000244546	ENST00000394110		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
In-frame	ENST00000244546	ENST00000472118		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
5CDS-intron	ENST00000244546	ENST00000461010		TCGA	LD	OV	TCGA-13-1505-01A	PEX6	chr6	42946007	-	PPP2R5D	chr6	42957349	+
Frame-shit	ENST00000401084	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
In-frame	ENST00000401084	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5CDS-5UTR	ENST00000401084	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5CDS-5UTR	ENST00000401084	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-3CDS	ENST00000264203	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-3CDS	ENST00000264203	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-5UTR	ENST00000264203	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-5UTR	ENST00000264203	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
Frame-shit	ENST00000375142	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
In-frame	ENST00000375142	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5CDS-5UTR	ENST00000375142	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5CDS-5UTR	ENST00000375142	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-3CDS	ENST00000433834	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-3CDS	ENST00000433834	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-5UTR	ENST00000433834	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-5UTR	ENST00000433834	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
Frame-shit	ENST00000264202	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
In-frame	ENST00000264202	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5CDS-5UTR	ENST00000264202	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5CDS-5UTR	ENST00000264202	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-3CDS	ENST00000482808	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-3CDS	ENST00000482808	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-5UTR	ENST00000482808	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
5UTR-5UTR	ENST00000482808	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-3CDS	ENST00000375144	ENST00000294543		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-3CDS	ENST00000375144	ENST00000375127		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-5UTR	ENST00000375144	ENST00000489814		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
intron-5UTR	ENST00000375144	ENST00000375122		TCGA	LD	OV	TCGA-13-1506-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20009937	-
In-frame	ENST00000261798	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
In-frame	ENST00000377843	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
In-frame	ENST00000515435	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
In-frame	ENST00000504676	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
In-frame	ENST00000515768	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
intron-3CDS	ENST00000606719	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
intron-3CDS	ENST00000606299	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
intron-3CDS	ENST00000515748	ENST00000255266		TCGA	LD	OV	TCGA-13-1506-01A	CSNK1A1	chr5	148899853	-	PDE6A	chr5	149242829	-
5CDS-5UTR	ENST00000415912	ENST00000547002		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000415912	ENST00000442892		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000415912	ENST00000442218		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000415912	ENST00000476104		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-5UTR	ENST00000357071	ENST00000547002		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-5UTR	ENST00000357071	ENST00000442892		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-intron	ENST00000357071	ENST00000442218		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-intron	ENST00000357071	ENST00000476104		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000374893	ENST00000547002		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000374893	ENST00000442892		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000374893	ENST00000442218		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000374893	ENST00000476104		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000436918	ENST00000547002		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000436918	ENST00000442892		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000436918	ENST00000442218		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000436918	ENST00000476104		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000264205	ENST00000547002		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-5UTR	ENST00000264205	ENST00000442892		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000264205	ENST00000442218		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
5CDS-intron	ENST00000264205	ENST00000476104		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-5UTR	ENST00000528294	ENST00000547002		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-5UTR	ENST00000528294	ENST00000442892		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-intron	ENST00000528294	ENST00000442218		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
intron-intron	ENST00000528294	ENST00000476104		TCGA	LD	OV	TCGA-13-1506-01A	ECE1	chr1	21616563	-	SLC48A1	chr12	48165953	+
Frame-shit	ENST00000394906	ENST00000354329		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394906	ENST00000529578		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394906	ENST00000533112		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394906	ENST00000531253		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394906	ENST00000527372		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
Frame-shit	ENST00000394908	ENST00000354329		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394908	ENST00000529578		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394908	ENST00000533112		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394908	ENST00000531253		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000394908	ENST00000527372		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
Frame-shit	ENST00000585169	ENST00000354329		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000585169	ENST00000529578		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000585169	ENST00000533112		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000585169	ENST00000531253		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000585169	ENST00000527372		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5UTR-3CDS	ENST00000577789	ENST00000354329		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5UTR-intron	ENST00000577789	ENST00000529578		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5UTR-intron	ENST00000577789	ENST00000533112		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5UTR-intron	ENST00000577789	ENST00000531253		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5UTR-intron	ENST00000577789	ENST00000527372		TCGA	LD	OV	TCGA-13-1506-01A	FLOT2	chr17	27224544	-	MYO18A	chr17	27422077	-
5CDS-intron	ENST00000371804	ENST00000371837		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
5CDS-intron	ENST00000371804	ENST00000487618		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
5CDS-5UTR	ENST00000371804	ENST00000336233		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
5CDS-5UTR	ENST00000371804	ENST00000456827		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
intron-intron	ENST00000546318	ENST00000371837		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
intron-intron	ENST00000546318	ENST00000487618		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
intron-5UTR	ENST00000546318	ENST00000336233		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
intron-5UTR	ENST00000546318	ENST00000456827		TCGA	LD	OV	TCGA-13-1506-01A	IFIT1	chr10	91152474	+	LIPA	chr10	91007406	-
5CDS-intron	ENST00000368533	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368533	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368533	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368533	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-3UTR	ENST00000368533	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000469717	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000469717	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000469717	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5UTR-intron	ENST00000469717	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5UTR-3UTR	ENST00000469717	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000330188	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000330188	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000330188	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000330188	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-3UTR	ENST00000330188	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000341485	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000341485	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000341485	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000341485	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-3UTR	ENST00000341485	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000341372	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000341372	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000341372	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000341372	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000341372	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000328159	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000328159	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000328159	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000328159	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-3UTR	ENST00000328159	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000271850	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000271850	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000271850	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000271850	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000271850	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000302206	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000302206	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000302206	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000302206	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000302206	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368531	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368531	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368531	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000368531	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-3UTR	ENST00000368531	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000323144	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000323144	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000323144	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-intron	ENST00000323144	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5CDS-3UTR	ENST00000323144	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000368530	ENST00000545951		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000368530	ENST00000382839		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000368530	ENST00000324666		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-intron	ENST00000368530	ENST00000502458		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
intron-3UTR	ENST00000368530	ENST00000505311		TCGA	LD	OV	TCGA-13-1506-01A	TPM3	chr1	154155464	-	FAM193A	chr4	2733502	+
5UTR-5UTR	ENST00000320892	ENST00000391976		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
5UTR-5UTR	ENST00000320892	ENST00000310931		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
5UTR-5UTR	ENST00000320892	ENST00000391975		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
5UTR-5UTR	ENST00000320892	ENST00000427183		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
5UTR-intron	ENST00000320892	ENST00000476807		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
3UTR-5UTR	ENST00000467276	ENST00000391976		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
3UTR-5UTR	ENST00000467276	ENST00000310931		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
3UTR-5UTR	ENST00000467276	ENST00000391975		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
3UTR-5UTR	ENST00000467276	ENST00000427183		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
3UTR-intron	ENST00000467276	ENST00000476807		TCGA	LD	OV	TCGA-13-1507-01A	RNF144A	chr2	7057753	+	HDLBP	chr2	242207956	-
Frame-shit	ENST00000274695	ENST00000357248		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000274695	ENST00000349721		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000274695	ENST00000382203		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000274695	ENST00000382194		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000274695	ENST00000491574		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000274695	ENST00000324954		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000274695	ENST00000302401		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000274695	ENST00000382186		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000274695	ENST00000382185		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000378624	ENST00000357248		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000378624	ENST00000349721		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000378624	ENST00000382203		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000378624	ENST00000382194		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000378624	ENST00000491574		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000378624	ENST00000324954		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000378624	ENST00000302401		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000378624	ENST00000382186		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000378624	ENST00000382185		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000378610	ENST00000357248		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000378610	ENST00000349721		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000378610	ENST00000382203		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
Frame-shit	ENST00000378610	ENST00000382194		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000378610	ENST00000491574		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000378610	ENST00000324954		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000378610	ENST00000302401		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000378610	ENST00000382186		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000378610	ENST00000382185		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000476517	ENST00000357248		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000476517	ENST00000349721		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000476517	ENST00000382203		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-3CDS	ENST00000476517	ENST00000382194		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000476517	ENST00000491574		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000476517	ENST00000324954		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000476517	ENST00000302401		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000476517	ENST00000382186		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
intron-intron	ENST00000476517	ENST00000382185		TCGA	LD	OV	TCGA-13-1510-01A	CDKAL1	chr6	20548936	+	SMARCA2	chr9	2192704	+
5CDS-intron	ENST00000525566	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5CDS-intron	ENST00000429002	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5UTR-intron	ENST00000503506	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5CDS-intron	ENST00000526691	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5CDS-intron	ENST00000388854	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
intron-intron	ENST00000354940	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5UTR-intron	ENST00000526390	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5UTR-intron	ENST00000529546	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5UTR-intron	ENST00000540716	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5UTR-intron	ENST00000524698	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5CDS-intron	ENST00000542918	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
5CDS-intron	ENST00000378070	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
intron-intron	ENST00000397736	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
intron-intron	ENST00000427956	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
intron-intron	ENST00000526950	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
intron-intron	ENST00000526006	ENST00000257549		TCGA	LD	OV	TCGA-13-1510-01A	TXNRD1	chr12	104682818	+	SDS	chr12	113863625	-
Frame-shit	ENST00000404816	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000404816	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000404816	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000404816	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000404816	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
5CDS-intron	ENST00000404816	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000354476	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000354476	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000354476	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000354476	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
Frame-shit	ENST00000354476	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
5CDS-intron	ENST00000354476	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000390003	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000390003	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000390003	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000390003	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000390003	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000390003	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000418533	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000418533	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000418533	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000418533	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000418533	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000418533	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000402934	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000402934	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000402934	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000402934	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000402934	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000402934	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000404525	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000404525	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000404525	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000404525	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000404525	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000404525	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000407925	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000407925	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000407925	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000407925	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000407925	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000407925	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000272273	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000272273	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000272273	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000272273	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000272273	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000272273	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000498013	ENST00000344773		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000498013	ENST00000379624		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000498013	ENST00000342045		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000498013	ENST00000379632		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-3CDS	ENST00000498013	ENST00000361704		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
intron-intron	ENST00000498013	ENST00000603461		TCGA	LD	OV	TCGA-13-1511-01A	LTBP1	chr2	33174012	+	BRE	chr2	28352138	+
In-frame	ENST00000306726	ENST00000538941		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
In-frame	ENST00000306726	ENST00000563290		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
In-frame	ENST00000306726	ENST00000324767		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
5CDS-intron	ENST00000306726	ENST00000562890		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
intron-3CDS	ENST00000564970	ENST00000538941		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
intron-3CDS	ENST00000564970	ENST00000563290		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
intron-3CDS	ENST00000564970	ENST00000324767		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
intron-intron	ENST00000564970	ENST00000562890		TCGA	LD	OV	TCGA-13-1511-01A	PTPN9	chr15	75871055	-	SCAPER	chr15	76726651	-
In-frame	ENST00000373202	ENST00000373207		TCGA	LD	OV	TCGA-13-1511-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72517718	+
In-frame	ENST00000373202	ENST00000373208		TCGA	LD	OV	TCGA-13-1511-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72517718	+
3UTR-3CDS	ENST00000486993	ENST00000373207		TCGA	LD	OV	TCGA-13-1511-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72517718	+
3UTR-3CDS	ENST00000486993	ENST00000373208		TCGA	LD	OV	TCGA-13-1511-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72517718	+
5UTR-3CDS	ENST00000286298	ENST00000333677		TCGA	LD	OV	TCGA-13-1511-01A	SLC26A2	chr5	149340542	+	ARHGEF37	chr5	149003575	+
5CDS-intron	ENST00000561311	ENST00000396057		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
5CDS-3UTR	ENST00000561311	ENST00000560857		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
5CDS-intron	ENST00000306829	ENST00000396057		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
5CDS-3UTR	ENST00000306829	ENST00000560857		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
intron-intron	ENST00000559908	ENST00000396057		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
intron-3UTR	ENST00000559908	ENST00000560857		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
intron-intron	ENST00000472902	ENST00000396057		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
intron-3UTR	ENST00000472902	ENST00000560857		TCGA	LD	OV	TCGA-13-1511-01A	TLN2	chr15	62950097	+	FOXB1	chr15	60328309	+
5CDS-intron	ENST00000397397	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397397	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397411	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397411	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
intron-intron	ENST00000397396	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
intron-intron	ENST00000397396	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397408	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397408	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397406	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397406	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000409543	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000409543	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
intron-intron	ENST00000525201	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
intron-intron	ENST00000525201	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397404	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000397404	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000346501	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000346501	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000409531	ENST00000398465		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
5CDS-intron	ENST00000409531	ENST00000248948		TCGA	LD	OV	TCGA-13-1511-01A	TSPAN4	chr11	850367	+	VPREB3	chr22	24095385	-
Frame-shit	ENST00000609104	ENST00000358621		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000609104	ENST00000357447		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000609104	ENST00000378503		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000609104	ENST00000342409		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000609104	ENST00000493380		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000609104	ENST00000475141		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000609104	ENST00000492155		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000277575	ENST00000358621		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000277575	ENST00000357447		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000277575	ENST00000378503		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000277575	ENST00000342409		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000277575	ENST00000493380		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000277575	ENST00000475141		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000277575	ENST00000492155		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000379237	ENST00000358621		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000379237	ENST00000357447		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000379237	ENST00000378503		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000379237	ENST00000342409		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000379237	ENST00000493380		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000379237	ENST00000475141		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000379237	ENST00000492155		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000443016	ENST00000358621		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000443016	ENST00000357447		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000443016	ENST00000378503		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000443016	ENST00000342409		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000443016	ENST00000493380		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000443016	ENST00000475141		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000443016	ENST00000492155		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000609853	ENST00000358621		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000609853	ENST00000357447		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000609853	ENST00000378503		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000609853	ENST00000342409		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000609853	ENST00000493380		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000609853	ENST00000475141		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000609853	ENST00000492155		TCGA	LD	OV	TCGA-13-1511-01A	USP6NL	chr10	11639630	-	FRMD4A	chr10	13900912	-
In-frame	ENST00000373382	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000373382	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
In-frame	ENST00000263559	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000263559	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
In-frame	ENST00000395098	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000395098	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5UTR-3CDS	ENST00000546041	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5UTR-3UTR	ENST00000546041	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
3UTR-3CDS	ENST00000490696	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
3UTR-3UTR	ENST00000490696	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5UTR-3CDS	ENST00000541711	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
5UTR-3UTR	ENST00000541711	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
intron-3CDS	ENST00000489794	ENST00000361320		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
intron-3UTR	ENST00000489794	ENST00000485868		TCGA	LD	OV	TCGA-13-1511-01A	VPS26A	chr10	70884036	+	LRRTM3	chr10	68857345	+
Frame-shit	ENST00000415676	ENST00000307877		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000415676	ENST00000539137		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000415676	ENST00000355113		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000415676	ENST00000602720		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000415676	ENST00000542536		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
Frame-shit	ENST00000288197	ENST00000307877		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000288197	ENST00000539137		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000288197	ENST00000355113		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000288197	ENST00000602720		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000288197	ENST00000542536		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
Frame-shit	ENST00000474759	ENST00000307877		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000474759	ENST00000539137		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-5UTR	ENST00000474759	ENST00000355113		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000474759	ENST00000602720		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-intron	ENST00000474759	ENST00000542536		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5UTR-3CDS	ENST00000490478	ENST00000307877		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5UTR-intron	ENST00000490478	ENST00000539137		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5UTR-5UTR	ENST00000490478	ENST00000355113		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5UTR-intron	ENST00000490478	ENST00000602720		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5UTR-intron	ENST00000490478	ENST00000542536		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
intron-3CDS	ENST00000478261	ENST00000307877		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
intron-intron	ENST00000478261	ENST00000539137		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
intron-5UTR	ENST00000478261	ENST00000355113		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
intron-intron	ENST00000478261	ENST00000602720		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
intron-intron	ENST00000478261	ENST00000542536		TCGA	LD	OV	TCGA-13-1512-01A	CACNA2D3	chr3	54157621	+	SRP68	chr17	74063411	-
5CDS-3UTR	ENST00000419617	ENST00000295462		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-intron	ENST00000419617	ENST00000512733		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-intron	ENST00000419617	ENST00000515541		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-intron	ENST00000419617	ENST00000380645		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-3UTR	ENST00000523601	ENST00000295462		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-intron	ENST00000523601	ENST00000512733		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-intron	ENST00000523601	ENST00000515541		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
5CDS-intron	ENST00000523601	ENST00000380645		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
intron-3UTR	ENST00000521768	ENST00000295462		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
intron-intron	ENST00000521768	ENST00000512733		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
intron-intron	ENST00000521768	ENST00000515541		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
intron-intron	ENST00000521768	ENST00000380645		TCGA	LD	OV	TCGA-13-1512-01A	STK3	chr8	99538970	-	PAQR3	chr4	79827315	-
Frame-shit	ENST00000398637	ENST00000080059		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000398637	ENST00000354334		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000398637	ENST00000552960		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000398637	ENST00000380610		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000398637	ENST00000427332		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000398637	ENST00000488927		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
In-frame	ENST00000549049	ENST00000080059		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
In-frame	ENST00000549049	ENST00000354334		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000549049	ENST00000552960		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000549049	ENST00000380610		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000549049	ENST00000427332		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000549049	ENST00000488927		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000439706	ENST00000080059		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000439706	ENST00000354334		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000439706	ENST00000552960		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000439706	ENST00000380610		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000439706	ENST00000427332		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000439706	ENST00000488927		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000546893	ENST00000080059		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
Frame-shit	ENST00000546893	ENST00000354334		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000546893	ENST00000552960		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000546893	ENST00000380610		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000546893	ENST00000427332		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000546893	ENST00000488927		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5UTR-3CDS	ENST00000549633	ENST00000080059		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5UTR-3CDS	ENST00000549633	ENST00000354334		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5UTR-intron	ENST00000549633	ENST00000552960		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5UTR-intron	ENST00000549633	ENST00000380610		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5UTR-5UTR	ENST00000549633	ENST00000427332		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5UTR-intron	ENST00000549633	ENST00000488927		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
In-frame	ENST00000552197	ENST00000080059		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
In-frame	ENST00000552197	ENST00000354334		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000552197	ENST00000552960		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000552197	ENST00000380610		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-5UTR	ENST00000552197	ENST00000427332		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
5CDS-intron	ENST00000552197	ENST00000488927		TCGA	LD	OV	TCGA-13-2060-01A	SLC38A1	chr12	46599863	-	HDAC7	chr12	48196057	-
In-frame	ENST00000398970	ENST00000301335		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000398970	ENST00000571650		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000398970	ENST00000382147		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000398970	ENST00000412517		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
5CDS-5UTR	ENST00000398970	ENST00000574274		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000300574	ENST00000301335		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000300574	ENST00000571650		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000300574	ENST00000382147		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000300574	ENST00000412517		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
5CDS-5UTR	ENST00000300574	ENST00000574274		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000574295	ENST00000301335		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000574295	ENST00000571650		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000574295	ENST00000382147		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
In-frame	ENST00000574295	ENST00000412517		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
5CDS-5UTR	ENST00000574295	ENST00000574274		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
intron-3CDS	ENST00000572145	ENST00000301335		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
intron-3CDS	ENST00000572145	ENST00000571650		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
intron-3CDS	ENST00000572145	ENST00000382147		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
intron-3CDS	ENST00000572145	ENST00000412517		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
intron-5UTR	ENST00000572145	ENST00000574274		TCGA	LD	OV	TCGA-13-A5FT-01A	CRK	chr17	1359171	-	SLC43A2	chr17	1496573	-
5CDS-5UTR	ENST00000372621	ENST00000427410		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000447388		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000425457		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000456393		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000372654		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000372653		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000372652		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000372651		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000440226		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372621	ENST00000308733		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000372621	ENST00000483091		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000427410		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000447388		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000425457		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000456393		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000372654		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000372653		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000372652		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000372651		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000440226		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000541520	ENST00000308733		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000541520	ENST00000483091		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000427410		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000447388		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000425457		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000456393		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000372654		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000372653		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000372652		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000372651		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000440226		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000475060	ENST00000308733		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
intron-intron	ENST00000475060	ENST00000483091		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000427410		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000447388		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000425457		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000456393		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000372654		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000372653		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000372652		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000372651		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000440226		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000543104	ENST00000308733		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000543104	ENST00000483091		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000427410		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000447388		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000425457		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000456393		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000372654		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000372653		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000372652		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000372651		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000440226		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000372616	ENST00000308733		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000372616	ENST00000483091		TCGA	LD	OV	TCGA-13-A5FT-01A	CTPS1	chr1	41457517	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000315127	ENST00000358632		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000315127	ENST00000268053		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000315127	ENST00000419019		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000315127	ENST00000541301		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000315127	ENST00000467407		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000426797	ENST00000358632		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000426797	ENST00000268053		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000426797	ENST00000419019		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000426797	ENST00000541301		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000426797	ENST00000467407		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000568176	ENST00000358632		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000568176	ENST00000268053		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000568176	ENST00000419019		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000568176	ENST00000541301		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000568176	ENST00000467407		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000562047	ENST00000358632		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000562047	ENST00000268053		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
intron-intron	ENST00000562047	ENST00000419019		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
intron-intron	ENST00000562047	ENST00000541301		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
intron-intron	ENST00000562047	ENST00000467407		TCGA	LD	OV	TCGA-13-A5FT-01A	EDC3	chr15	74948074	-	CYP11A1	chr15	74640396	-
5CDS-3UTR	ENST00000318522	ENST00000431359		TCGA	LD	OV	TCGA-13-A5FT-01A	EML4	chr2	42396776	+	HNRNPA1P57	chr2	41383737	+
5CDS-3UTR	ENST00000402711	ENST00000431359		TCGA	LD	OV	TCGA-13-A5FT-01A	EML4	chr2	42396776	+	HNRNPA1P57	chr2	41383737	+
3UTR-3UTR	ENST00000482660	ENST00000431359		TCGA	LD	OV	TCGA-13-A5FT-01A	EML4	chr2	42396776	+	HNRNPA1P57	chr2	41383737	+
5CDS-3UTR	ENST00000401738	ENST00000431359		TCGA	LD	OV	TCGA-13-A5FT-01A	EML4	chr2	42396776	+	HNRNPA1P57	chr2	41383737	+
intron-3UTR	ENST00000453191	ENST00000431359		TCGA	LD	OV	TCGA-13-A5FT-01A	EML4	chr2	42396776	+	HNRNPA1P57	chr2	41383737	+
5CDS-5UTR	ENST00000428826	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
5CDS-5UTR	ENST00000415827	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
5CDS-5UTR	ENST00000435174	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
5CDS-5UTR	ENST00000592743	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
5CDS-5UTR	ENST00000585893	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
5CDS-5UTR	ENST00000590078	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
intron-5UTR	ENST00000590783	ENST00000344686		TCGA	LD	OV	TCGA-13-A5FT-01A	EZH1	chr17	40861867	-	MAP3K14	chr17	43368134	-
5CDS-intron	ENST00000355472	ENST00000506693		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355472	ENST00000358149		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355472	ENST00000512315		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355472	ENST00000503425		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355472	ENST00000261948		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355472	ENST00000511834		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355472	ENST00000503039		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000506693		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000358149		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000512315		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000503425		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000261948		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000511834		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000507633	ENST00000503039		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000506693		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000358149		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000512315		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000503425		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000261948		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000511834		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000393576	ENST00000503039		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000506693		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000358149		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000512315		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000503425		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000261948		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000511834		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000355958	ENST00000503039		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000506693		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000358149		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000512315		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000503425		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000261948		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000511834		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5CDS-intron	ENST00000528793	ENST00000503039		TCGA	LD	OV	TCGA-13-A5FT-01A	GRK6	chr5	176863531	+	ZNF346	chr5	176471390	+
5UTR-3CDS	ENST00000531894	ENST00000268802		TCGA	LD	OV	TCGA-13-A5FT-01A	PDXDC2P	chr16	70099659	-	NOB1	chr16	69788629	-
5UTR-3CDS	ENST00000525173	ENST00000268802		TCGA	LD	OV	TCGA-13-A5FT-01A	PDXDC2P	chr16	70099659	-	NOB1	chr16	69788629	-
Frame-shit	ENST00000327697	ENST00000356401		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
Frame-shit	ENST00000327697	ENST00000449376		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
5CDS-3UTR	ENST00000327697	ENST00000490095		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
Frame-shit	ENST00000432042	ENST00000356401		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
Frame-shit	ENST00000432042	ENST00000449376		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
5CDS-3UTR	ENST00000432042	ENST00000490095		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
intron-3CDS	ENST00000433785	ENST00000356401		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
intron-3CDS	ENST00000433785	ENST00000449376		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
intron-3UTR	ENST00000433785	ENST00000490095		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
intron-3CDS	ENST00000497099	ENST00000356401		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
intron-3CDS	ENST00000497099	ENST00000449376		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
intron-3UTR	ENST00000497099	ENST00000490095		TCGA	LD	OV	TCGA-13-A5FT-01A	RNF123	chr3	49744331	+	ARIH2	chr3	49011132	+
3UTR-3CDS	ENST00000327443	ENST00000267103		TCGA	LD	OV	TCGA-13-A5FT-01A	SP1	chr12	53805219	+	C12orf10	chr12	53699692	+
3UTR-intron	ENST00000327443	ENST00000548632		TCGA	LD	OV	TCGA-13-A5FT-01A	SP1	chr12	53805219	+	C12orf10	chr12	53699692	+
3UTR-intron	ENST00000327443	ENST00000549488		TCGA	LD	OV	TCGA-13-A5FT-01A	SP1	chr12	53805219	+	C12orf10	chr12	53699692	+
3UTR-3CDS	ENST00000426431	ENST00000267103		TCGA	LD	OV	TCGA-13-A5FT-01A	SP1	chr12	53805219	+	C12orf10	chr12	53699692	+
3UTR-intron	ENST00000426431	ENST00000548632		TCGA	LD	OV	TCGA-13-A5FT-01A	SP1	chr12	53805219	+	C12orf10	chr12	53699692	+
3UTR-intron	ENST00000426431	ENST00000549488		TCGA	LD	OV	TCGA-13-A5FT-01A	SP1	chr12	53805219	+	C12orf10	chr12	53699692	+
5CDS-5UTR	ENST00000356136	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000356136	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000356136	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000356136	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000356136	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000528420	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000528420	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000528420	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000528420	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000528420	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533454	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533454	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533454	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533454	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-intron	ENST00000533454	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000531818	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000531818	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000531818	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000531818	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-intron	ENST00000531818	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000532130	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000532130	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000532130	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000532130	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-intron	ENST00000532130	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000539288	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000539288	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000539288	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000539288	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-intron	ENST00000539288	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
3UTR-5UTR	ENST00000525872	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
3UTR-5UTR	ENST00000525872	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
3UTR-5UTR	ENST00000525872	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
3UTR-5UTR	ENST00000525872	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
3UTR-intron	ENST00000525872	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000538870	ENST00000533603		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000538870	ENST00000358171		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000538870	ENST00000530284		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000538870	ENST00000524558		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
intron-intron	ENST00000538870	ENST00000525876		TCGA	LD	OV	TCGA-13-A5FT-01A	UVRAG	chr11	75623083	+	SERPINH1	chr11	75277361	+
Frame-shit	ENST00000360079	ENST00000216237		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5CDS-intron	ENST00000360079	ENST00000489136		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
Frame-shit	ENST00000402580	ENST00000216237		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5CDS-intron	ENST00000402580	ENST00000489136		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
Frame-shit	ENST00000428575	ENST00000216237		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5CDS-intron	ENST00000428575	ENST00000489136		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
Frame-shit	ENST00000359308	ENST00000216237		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5CDS-intron	ENST00000359308	ENST00000489136		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
Frame-shit	ENST00000405878	ENST00000216237		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5CDS-intron	ENST00000405878	ENST00000489136		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
Frame-shit	ENST00000405506	ENST00000216237		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5CDS-intron	ENST00000405506	ENST00000489136		TCGA	LD	OV	TCGA-13-A5FT-01A	XRCC6	chr22	42054356	+	L3MBTL2	chr22	41621798	+
5UTR-intron	ENST00000291572	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
5UTR-intron	ENST00000291572	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
5UTR-intron	ENST00000291572	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
5UTR-intron	ENST00000291572	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
5UTR-intron	ENST00000291572	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398061	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398061	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398061	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398061	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398061	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000327505	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000327505	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000327505	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000327505	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000327505	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398063	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398063	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398063	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398063	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398063	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398058	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398058	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398058	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398058	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000398058	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000546158	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000546158	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000546158	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000546158	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000546158	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000479117	ENST00000324350		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000479117	ENST00000373191		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000479117	ENST00000397828		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000479117	ENST00000246314		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
intron-intron	ENST00000479117	ENST00000471099		TCGA	LD	OV	TCGA-20-0987-01A	AGPAT3	chr21	45285226	+	AGO3	chr1	36492715	+
5UTR-5UTR	ENST00000557401	ENST00000331628		TCGA	LD	OV	TCGA-20-0987-01A	AREL1	chr14	75151157	-	SYNDIG1L	chr14	74876504	-
5UTR-5UTR	ENST00000557401	ENST00000554823		TCGA	LD	OV	TCGA-20-0987-01A	AREL1	chr14	75151157	-	SYNDIG1L	chr14	74876504	-
5CDS-5UTR	ENST00000356357	ENST00000331628		TCGA	LD	OV	TCGA-20-0987-01A	AREL1	chr14	75151157	-	SYNDIG1L	chr14	74876504	-
5CDS-5UTR	ENST00000356357	ENST00000554823		TCGA	LD	OV	TCGA-20-0987-01A	AREL1	chr14	75151157	-	SYNDIG1L	chr14	74876504	-
In-frame	ENST00000158771	ENST00000262467		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
In-frame	ENST00000158771	ENST00000345221		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
In-frame	ENST00000158771	ENST00000269280		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
In-frame	ENST00000158771	ENST00000572272		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
In-frame	ENST00000158771	ENST00000354411		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
In-frame	ENST00000158771	ENST00000577119		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
5CDS-5UTR	ENST00000158771	ENST00000571307		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000572834	ENST00000262467		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000572834	ENST00000345221		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000572834	ENST00000269280		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000572834	ENST00000572272		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000572834	ENST00000354411		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000572834	ENST00000577119		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-5UTR	ENST00000572834	ENST00000571307		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000570848	ENST00000262467		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000570848	ENST00000345221		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000570848	ENST00000269280		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000570848	ENST00000572272		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000570848	ENST00000354411		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-3CDS	ENST00000570848	ENST00000577119		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
3UTR-5UTR	ENST00000570848	ENST00000571307		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-3CDS	ENST00000571968	ENST00000262467		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-3CDS	ENST00000571968	ENST00000345221		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-3CDS	ENST00000571968	ENST00000269280		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-3CDS	ENST00000571968	ENST00000572272		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-3CDS	ENST00000571968	ENST00000354411		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-3CDS	ENST00000571968	ENST00000577119		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
intron-5UTR	ENST00000571968	ENST00000571307		TCGA	LD	OV	TCGA-20-0987-01A	DERL2	chr17	5383374	-	NLRP1	chr17	5437308	-
5CDS-intron	ENST00000373314	ENST00000423807		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373314	ENST00000419060		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373314	ENST00000543175		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373314	ENST00000429848		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373312	ENST00000423807		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373312	ENST00000419060		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373312	ENST00000543175		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
5CDS-intron	ENST00000373312	ENST00000429848		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
intron-intron	ENST00000468379	ENST00000423807		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
intron-intron	ENST00000468379	ENST00000419060		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
intron-intron	ENST00000468379	ENST00000543175		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
intron-intron	ENST00000468379	ENST00000429848		TCGA	LD	OV	TCGA-20-0987-01A	FAM129B	chr9	130279136	-	PTRH1	chr9	130457420	-
In-frame	ENST00000532317	ENST00000393324		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000532317	ENST00000359636		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000532317	ENST00000543262		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000532317	ENST00000323418		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000532317	ENST00000525957		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000526033	ENST00000393324		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000526033	ENST00000359636		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000526033	ENST00000543262		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000526033	ENST00000323418		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000526033	ENST00000525957		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000393346	ENST00000393324		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000393346	ENST00000359636		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000393346	ENST00000543262		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000393346	ENST00000323418		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000393346	ENST00000525957		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
intron-3CDS	ENST00000528398	ENST00000393324		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
intron-3CDS	ENST00000528398	ENST00000359636		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
intron-3CDS	ENST00000528398	ENST00000543262		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
intron-3CDS	ENST00000528398	ENST00000323418		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
intron-intron	ENST00000528398	ENST00000525957		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000356360	ENST00000393324		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000356360	ENST00000359636		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000356360	ENST00000543262		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
In-frame	ENST00000356360	ENST00000323418		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000356360	ENST00000525957		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5UTR-3CDS	ENST00000528411	ENST00000393324		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5UTR-3CDS	ENST00000528411	ENST00000359636		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5UTR-3CDS	ENST00000528411	ENST00000543262		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5UTR-3CDS	ENST00000528411	ENST00000323418		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5UTR-intron	ENST00000528411	ENST00000525957		TCGA	LD	OV	TCGA-20-0987-01A	PICALM	chr11	85779693	-	ME3	chr11	86270865	-
5CDS-intron	ENST00000368467	ENST00000368465		TCGA	LD	OV	TCGA-20-0987-01A	PMVK	chr1	154904828	-	PBXIP1	chr1	154926233	-
5CDS-5UTR	ENST00000368467	ENST00000368463		TCGA	LD	OV	TCGA-20-0987-01A	PMVK	chr1	154904828	-	PBXIP1	chr1	154926233	-
5CDS-5UTR	ENST00000368467	ENST00000539880		TCGA	LD	OV	TCGA-20-0987-01A	PMVK	chr1	154904828	-	PBXIP1	chr1	154926233	-
5CDS-intron	ENST00000368467	ENST00000542459		TCGA	LD	OV	TCGA-20-0987-01A	PMVK	chr1	154904828	-	PBXIP1	chr1	154926233	-
5CDS-5UTR	ENST00000368467	ENST00000368460		TCGA	LD	OV	TCGA-20-0987-01A	PMVK	chr1	154904828	-	PBXIP1	chr1	154926233	-
5CDS-5UTR	ENST00000368467	ENST00000498553		TCGA	LD	OV	TCGA-20-0987-01A	PMVK	chr1	154904828	-	PBXIP1	chr1	154926233	-
5CDS-5UTR	ENST00000255559	ENST00000335793		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000255559	ENST00000439510		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000255559	ENST00000581014		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000255559	ENST00000582303		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000542342	ENST00000335793		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000542342	ENST00000439510		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000542342	ENST00000581014		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000542342	ENST00000582303		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000579988	ENST00000335793		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000579988	ENST00000439510		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000579988	ENST00000581014		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000579988	ENST00000582303		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000579732	ENST00000335793		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000579732	ENST00000439510		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000579732	ENST00000581014		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000579732	ENST00000582303		TCGA	LD	OV	TCGA-20-0987-01A	SLC39A11	chr17	71027695	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000373825	ENST00000459703		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5CDS-intron	ENST00000373825	ENST00000393189		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5CDS-intron	ENST00000373825	ENST00000244751		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5UTR-intron	ENST00000423325	ENST00000459703		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5UTR-intron	ENST00000423325	ENST00000393189		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5UTR-intron	ENST00000423325	ENST00000244751		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5UTR-intron	ENST00000373822	ENST00000459703		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5UTR-intron	ENST00000373822	ENST00000393189		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
5UTR-intron	ENST00000373822	ENST00000244751		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
intron-intron	ENST00000373821	ENST00000459703		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
intron-intron	ENST00000373821	ENST00000393189		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
intron-intron	ENST00000373821	ENST00000244751		TCGA	LD	OV	TCGA-20-0987-01A	SRPK1	chr6	35888245	-	CPNE5	chr6	36733153	-
Frame-shit	ENST00000342704	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000342704	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000342704	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000342704	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
5CDS-3UTR	ENST00000342704	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000375279	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000375279	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000375279	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000375279	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
5UTR-3UTR	ENST00000375279	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000344201	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000344201	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000344201	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000344201	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000344201	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397798	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397798	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397798	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397798	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000397798	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000346541	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000346541	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000346541	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000346541	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000346541	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397800	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397800	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397800	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000397800	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000397800	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000492345	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000492345	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000492345	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000492345	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000492345	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000359606	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000359606	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000359606	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000359606	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000359606	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000491618	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000491618	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000491618	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000491618	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000491618	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000543126	ENST00000341197		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000543126	ENST00000423191		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000543126	ENST00000372999		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3CDS	ENST00000543126	ENST00000358131		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
intron-3UTR	ENST00000543126	ENST00000435864		TCGA	LD	OV	TCGA-20-0991-01A	CBFA2T2	chr20	32078107	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000357410	ENST00000255175		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
Frame-shit	ENST00000357410	ENST00000342374		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-5UTR	ENST00000357410	ENST00000541235		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-5UTR	ENST00000357410	ENST00000468234		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
Frame-shit	ENST00000327619	ENST00000255175		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
Frame-shit	ENST00000327619	ENST00000342374		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-5UTR	ENST00000327619	ENST00000541235		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-5UTR	ENST00000327619	ENST00000468234		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
intron-3CDS	ENST00000497428	ENST00000255175		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
intron-3CDS	ENST00000497428	ENST00000342374		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
intron-5UTR	ENST00000497428	ENST00000541235		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
intron-5UTR	ENST00000497428	ENST00000468234		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
Frame-shit	ENST00000317304	ENST00000255175		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
Frame-shit	ENST00000317304	ENST00000342374		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-5UTR	ENST00000317304	ENST00000541235		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-5UTR	ENST00000317304	ENST00000468234		TCGA	LD	OV	TCGA-20-0991-01A	EYA2	chr20	45644936	+	SERINC3	chr20	43142681	-
5CDS-intron	ENST00000372771	ENST00000431635		TCGA	LD	OV	TCGA-20-0991-01A	RLF	chr1	40688382	+	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000372771	ENST00000236051		TCGA	LD	OV	TCGA-20-0991-01A	RLF	chr1	40688382	+	EBNA1BP2	chr1	43727589	-
5CDS-intron	ENST00000372771	ENST00000472982		TCGA	LD	OV	TCGA-20-0991-01A	RLF	chr1	40688382	+	EBNA1BP2	chr1	43727589	-
In-frame	ENST00000344824	ENST00000222247		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000344824	ENST00000600147		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000344824	ENST00000599898		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
5CDS-5UTR	ENST00000344824	ENST00000599870		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000538887	ENST00000222247		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000538887	ENST00000600147		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000538887	ENST00000599898		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
5CDS-5UTR	ENST00000538887	ENST00000599870		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000300933	ENST00000222247		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000300933	ENST00000600147		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
In-frame	ENST00000300933	ENST00000599898		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
5CDS-5UTR	ENST00000300933	ENST00000599870		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
intron-3CDS	ENST00000591645	ENST00000222247		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
intron-3CDS	ENST00000591645	ENST00000600147		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
intron-3CDS	ENST00000591645	ENST00000599898		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
intron-5UTR	ENST00000591645	ENST00000599870		TCGA	LD	OV	TCGA-20-0991-01A	TPM4	chr19	16199930	+	RPL18A	chr19	17972102	+
5UTR-3CDS	ENST00000357242	ENST00000324342		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
5UTR-3CDS	ENST00000357242	ENST00000255499		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
5UTR-3CDS	ENST00000310452	ENST00000324342		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
5UTR-3CDS	ENST00000310452	ENST00000255499		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
5UTR-3CDS	ENST00000481617	ENST00000324342		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
5UTR-3CDS	ENST00000481617	ENST00000255499		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
intron-3CDS	ENST00000276175	ENST00000324342		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
intron-3CDS	ENST00000276175	ENST00000255499		TCGA	LD	OV	TCGA-20-1682-01A	TBC1D8B	chrX	106046035	+	RNF128	chrX	106034296	+
5CDS-5UTR	ENST00000340353	ENST00000372458		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000340353	ENST00000413844		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000340353	ENST00000470769		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000532959	ENST00000372458		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000532959	ENST00000413844		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000532959	ENST00000470769		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000305494	ENST00000372458		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000305494	ENST00000413844		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000305494	ENST00000470769		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000535167	ENST00000372458		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000535167	ENST00000413844		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
5CDS-5UTR	ENST00000535167	ENST00000470769		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
intron-5UTR	ENST00000355734	ENST00000372458		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
intron-5UTR	ENST00000355734	ENST00000413844		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
intron-5UTR	ENST00000355734	ENST00000470769		TCGA	LD	OV	TCGA-20-1682-01A	TMEM135	chr11	86947726	+	ELOVL1	chr1	43831294	-
Frame-shit	ENST00000367942	ENST00000367975		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
Frame-shit	ENST00000367942	ENST00000342751		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
Frame-shit	ENST00000367942	ENST00000432287		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
In-frame	ENST00000367942	ENST00000392169		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
In-frame	ENST00000367942	ENST00000513009		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
5CDS-3UTR	ENST00000367942	ENST00000470743		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-3CDS	ENST00000476437	ENST00000367975		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-3CDS	ENST00000476437	ENST00000342751		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-3CDS	ENST00000476437	ENST00000432287		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-3CDS	ENST00000476437	ENST00000392169		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-3CDS	ENST00000476437	ENST00000513009		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-3UTR	ENST00000476437	ENST00000470743		TCGA	LD	OV	TCGA-20-1683-01A	ATF6	chr1	161823113	+	SDHC	chr1	161332119	+
3UTR-5UTR	ENST00000521282	ENST00000306562		TCGA	LD	OV	TCGA-20-1683-01A	BAG4	chr8	38050313	+	ZNF672	chr1	249138682	+
3UTR-3UTR	ENST00000521282	ENST00000502697		TCGA	LD	OV	TCGA-20-1683-01A	BAG4	chr8	38050313	+	ZNF672	chr1	249138682	+
intron-5UTR	ENST00000432471	ENST00000306562		TCGA	LD	OV	TCGA-20-1683-01A	BAG4	chr8	38050313	+	ZNF672	chr1	249138682	+
intron-3UTR	ENST00000432471	ENST00000502697		TCGA	LD	OV	TCGA-20-1683-01A	BAG4	chr8	38050313	+	ZNF672	chr1	249138682	+
5CDS-5UTR	ENST00000287322	ENST00000306562		TCGA	LD	OV	TCGA-20-1683-01A	BAG4	chr8	38050313	+	ZNF672	chr1	249138682	+
5CDS-3UTR	ENST00000287322	ENST00000502697		TCGA	LD	OV	TCGA-20-1683-01A	BAG4	chr8	38050313	+	ZNF672	chr1	249138682	+
5CDS-5UTR	ENST00000262367	ENST00000301744		TCGA	LD	OV	TCGA-20-1683-01A	CREBBP	chr16	3900298	-	ZNF597	chr16	3493206	-
5CDS-5UTR	ENST00000382070	ENST00000301744		TCGA	LD	OV	TCGA-20-1683-01A	CREBBP	chr16	3900298	-	ZNF597	chr16	3493206	-
5CDS-5UTR	ENST00000221466	ENST00000532489		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-5UTR	ENST00000221466	ENST00000391851		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-5UTR	ENST00000221466	ENST00000454376		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-intron	ENST00000221466	ENST00000527866		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-5UTR	ENST00000426395	ENST00000532489		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-5UTR	ENST00000426395	ENST00000391851		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-5UTR	ENST00000426395	ENST00000454376		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
5CDS-intron	ENST00000426395	ENST00000527866		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
3UTR-5UTR	ENST00000594823	ENST00000532489		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
3UTR-5UTR	ENST00000594823	ENST00000391851		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
3UTR-5UTR	ENST00000594823	ENST00000454376		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
3UTR-intron	ENST00000594823	ENST00000527866		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-5UTR	ENST00000599988	ENST00000532489		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-5UTR	ENST00000599988	ENST00000391851		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-5UTR	ENST00000599988	ENST00000454376		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-intron	ENST00000599988	ENST00000527866		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-5UTR	ENST00000596975	ENST00000532489		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-5UTR	ENST00000596975	ENST00000391851		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-5UTR	ENST00000596975	ENST00000454376		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
intron-intron	ENST00000596975	ENST00000527866		TCGA	LD	OV	TCGA-20-1683-01A	FCGRT	chr19	50017743	+	PRMT1	chr19	50183744	+
In-frame	ENST00000334534	ENST00000305768		TCGA	LD	OV	TCGA-20-1683-01A	SLX4IP	chr20	10438879	+	CEP89	chr19	33378747	-
5CDS-intron	ENST00000334534	ENST00000590597		TCGA	LD	OV	TCGA-20-1683-01A	SLX4IP	chr20	10438879	+	CEP89	chr19	33378747	-
5CDS-intron	ENST00000334534	ENST00000591863		TCGA	LD	OV	TCGA-20-1683-01A	SLX4IP	chr20	10438879	+	CEP89	chr19	33378747	-
5CDS-5UTR	ENST00000348165	ENST00000429029		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000348165	ENST00000262177		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000348165	ENST00000452797		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000348165	ENST00000443280		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-intron	ENST00000348165	ENST00000494267		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000389103	ENST00000429029		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000389103	ENST00000262177		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000389103	ENST00000452797		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-5UTR	ENST00000389103	ENST00000443280		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-intron	ENST00000389103	ENST00000494267		TCGA	LD	OV	TCGA-20-1683-01A	UBE3C	chr7	156932032	+	DNAJB6	chr7	157151241	+
5CDS-intron	ENST00000590071	ENST00000601241		TCGA	LD	OV	TCGA-20-1683-01A	WTIP	chr19	34986676	+	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000590071	ENST00000595326		TCGA	LD	OV	TCGA-20-1683-01A	WTIP	chr19	34986676	+	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000590071	ENST00000379204		TCGA	LD	OV	TCGA-20-1683-01A	WTIP	chr19	34986676	+	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000270288	ENST00000601241		TCGA	LD	OV	TCGA-20-1683-01A	WTIP	chr19	34986676	+	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000270288	ENST00000595326		TCGA	LD	OV	TCGA-20-1683-01A	WTIP	chr19	34986676	+	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000270288	ENST00000379204		TCGA	LD	OV	TCGA-20-1683-01A	WTIP	chr19	34986676	+	SCGB2B2	chr19	35123545	-
Frame-shit	ENST00000415676	ENST00000471642		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
In-frame	ENST00000415676	ENST00000368336		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000415676	ENST00000343043		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000415676	ENST00000496863		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000415676	ENST00000535183		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000415676	ENST00000421487		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000415676	ENST00000465375		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000288197	ENST00000471642		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
In-frame	ENST00000288197	ENST00000368336		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000288197	ENST00000343043		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000288197	ENST00000496863		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000288197	ENST00000535183		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000288197	ENST00000421487		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000288197	ENST00000465375		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000474759	ENST00000471642		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
In-frame	ENST00000474759	ENST00000368336		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000474759	ENST00000343043		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000474759	ENST00000496863		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000474759	ENST00000535183		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000474759	ENST00000421487		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000474759	ENST00000465375		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000490478	ENST00000471642		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
In-frame	ENST00000490478	ENST00000368336		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000490478	ENST00000343043		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000490478	ENST00000496863		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000490478	ENST00000535183		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000490478	ENST00000421487		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
5CDS-intron	ENST00000490478	ENST00000465375		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-3CDS	ENST00000478261	ENST00000471642		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-3CDS	ENST00000478261	ENST00000368336		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-3CDS	ENST00000478261	ENST00000343043		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-intron	ENST00000478261	ENST00000496863		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-intron	ENST00000478261	ENST00000535183		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-intron	ENST00000478261	ENST00000421487		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
intron-intron	ENST00000478261	ENST00000465375		TCGA	LD	OV	TCGA-20-1684-01A	CACNA2D3	chr3	54676268	+	DAP3	chr1	155707948	+
Frame-shit	ENST00000263921	ENST00000248701		TCGA	LD	OV	TCGA-20-1684-01A	CHIC2	chr4	54915122	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000263921	ENST00000506738		TCGA	LD	OV	TCGA-20-1684-01A	CHIC2	chr4	54915122	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000263921	ENST00000504762		TCGA	LD	OV	TCGA-20-1684-01A	CHIC2	chr4	54915122	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000512964	ENST00000248701		TCGA	LD	OV	TCGA-20-1684-01A	CHIC2	chr4	54915122	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000512964	ENST00000506738		TCGA	LD	OV	TCGA-20-1684-01A	CHIC2	chr4	54915122	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000512964	ENST00000504762		TCGA	LD	OV	TCGA-20-1684-01A	CHIC2	chr4	54915122	-	SPINK2	chr4	57686745	-
Frame-shit	ENST00000375735	ENST00000526343		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000375735	ENST00000282441		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000375735	ENST00000537274		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000375735	ENST00000345877		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000375735	ENST00000531439		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000375735	ENST00000524575		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000375735	ENST00000528834		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000334267	ENST00000526343		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000334267	ENST00000282441		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000334267	ENST00000537274		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000334267	ENST00000345877		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000334267	ENST00000531439		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-3CDS	ENST00000334267	ENST00000524575		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
intron-intron	ENST00000334267	ENST00000528834		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000398093	ENST00000526343		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000398093	ENST00000282441		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000398093	ENST00000537274		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000398093	ENST00000345877		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000398093	ENST00000531439		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
Frame-shit	ENST00000398093	ENST00000524575		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000398093	ENST00000528834		TCGA	LD	OV	TCGA-20-1684-01A	DYNC2H1	chr11	103153814	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000393784	ENST00000518527		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393784	ENST00000377360		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393784	ENST00000328939		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000393784	ENST00000390656		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000393784	ENST00000520740		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000393784	ENST00000434108		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000393784	ENST00000411494		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-intron	ENST00000519860	ENST00000518527		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-intron	ENST00000519860	ENST00000377360		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-intron	ENST00000519860	ENST00000328939		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-intron	ENST00000519860	ENST00000390656		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-5UTR	ENST00000519860	ENST00000520740		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-5UTR	ENST00000519860	ENST00000434108		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
3UTR-5UTR	ENST00000519860	ENST00000411494		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000523291	ENST00000518527		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000523291	ENST00000377360		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000523291	ENST00000328939		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-intron	ENST00000523291	ENST00000390656		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000523291	ENST00000520740		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000523291	ENST00000434108		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
5CDS-5UTR	ENST00000523291	ENST00000411494		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-intron	ENST00000326654	ENST00000518527		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-intron	ENST00000326654	ENST00000377360		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-intron	ENST00000326654	ENST00000328939		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-intron	ENST00000326654	ENST00000390656		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000326654	ENST00000520740		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000326654	ENST00000434108		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
intron-5UTR	ENST00000326654	ENST00000411494		TCGA	LD	OV	TCGA-20-1684-01A	ERGIC1	chr5	172261436	+	KCNIP1	chr5	170145762	+
Frame-shit	ENST00000372572	ENST00000343304		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
5CDS-5UTR	ENST00000372572	ENST00000472710		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
In-frame	ENST00000372573	ENST00000343304		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
5CDS-5UTR	ENST00000372573	ENST00000472710		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
In-frame	ENST00000361346	ENST00000343304		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
5CDS-5UTR	ENST00000361346	ENST00000472710		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
In-frame	ENST00000361776	ENST00000343304		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
5CDS-5UTR	ENST00000361776	ENST00000472710		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
In-frame	ENST00000545068	ENST00000343304		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
5CDS-5UTR	ENST00000545068	ENST00000472710		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
intron-3CDS	ENST00000372571	ENST00000343304		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
intron-5UTR	ENST00000372571	ENST00000472710		TCGA	LD	OV	TCGA-20-1684-01A	FOXJ3	chr1	42693554	-	LRRC41	chr1	46764042	-
Frame-shit	ENST00000205061	ENST00000283882		TCGA	LD	OV	TCGA-20-1684-01A	GLG1	chr16	74501654	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000205061	ENST00000564286		TCGA	LD	OV	TCGA-20-1684-01A	GLG1	chr16	74501654	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000422840	ENST00000283882		TCGA	LD	OV	TCGA-20-1684-01A	GLG1	chr16	74501654	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000422840	ENST00000564286		TCGA	LD	OV	TCGA-20-1684-01A	GLG1	chr16	74501654	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000447066	ENST00000283882		TCGA	LD	OV	TCGA-20-1684-01A	GLG1	chr16	74501654	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000447066	ENST00000564286		TCGA	LD	OV	TCGA-20-1684-01A	GLG1	chr16	74501654	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000374864	ENST00000342704		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
In-frame	ENST00000374864	ENST00000375279		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000344201		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000397798		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000346541		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000397800		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000492345		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000359606		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000491618		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000374864	ENST00000543126		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-3CDS	ENST00000535650	ENST00000342704		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-3CDS	ENST00000535650	ENST00000375279		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000344201		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000397798		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000346541		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000397800		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000492345		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000359606		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000491618		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000535650	ENST00000543126		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000262650	ENST00000342704		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
In-frame	ENST00000262650	ENST00000375279		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000344201		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000397798		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000346541		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000397800		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000492345		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000359606		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000491618		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000262650	ENST00000543126		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000483727	ENST00000342704		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000483727	ENST00000375279		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000344201		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000397798		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000346541		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000397800		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000492345		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000359606		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000491618		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000483727	ENST00000543126		TCGA	LD	OV	TCGA-20-1684-01A	ITCH	chr20	32981687	+	CBFA2T2	chr20	32232153	+
In-frame	ENST00000399262	ENST00000433211		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
In-frame	ENST00000399262	ENST00000373744		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000399262	ENST00000545309		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000399262	ENST00000373735		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000402544	ENST00000433211		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000402544	ENST00000373744		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-intron	ENST00000402544	ENST00000545309		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-intron	ENST00000402544	ENST00000373735		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5UTR-3CDS	ENST00000399251	ENST00000433211		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5UTR-3CDS	ENST00000399251	ENST00000373744		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5UTR-intron	ENST00000399251	ENST00000545309		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5UTR-intron	ENST00000399251	ENST00000373735		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000542921	ENST00000433211		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000542921	ENST00000373744		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-intron	ENST00000542921	ENST00000545309		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-intron	ENST00000542921	ENST00000373735		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000489372	ENST00000433211		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000489372	ENST00000373744		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-intron	ENST00000489372	ENST00000545309		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
intron-intron	ENST00000489372	ENST00000373735		TCGA	LD	OV	TCGA-20-1684-01A	JMJD1C	chr10	65140078	-	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000394907	ENST00000561030		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-5UTR	ENST00000394907	ENST00000567605		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-intron	ENST00000394907	ENST00000355300		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-intron	ENST00000535975	ENST00000561030		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-5UTR	ENST00000535975	ENST00000567605		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-intron	ENST00000535975	ENST00000355300		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-intron	ENST00000305435	ENST00000561030		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-5UTR	ENST00000305435	ENST00000567605		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
5CDS-intron	ENST00000305435	ENST00000355300		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
intron-intron	ENST00000563582	ENST00000561030		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
intron-5UTR	ENST00000563582	ENST00000567605		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
intron-intron	ENST00000563582	ENST00000355300		TCGA	LD	OV	TCGA-20-1684-01A	NRG4	chr15	76301541	-	LINGO1	chr15	78088395	-
intron-3CDS	ENST00000381898	ENST00000311955		TCGA	LD	OV	TCGA-20-1684-01A	PSMF1	chr20	1099545	+	ABRA	chr8	107773742	-
Frame-shit	ENST00000333082	ENST00000311955		TCGA	LD	OV	TCGA-20-1684-01A	PSMF1	chr20	1099545	+	ABRA	chr8	107773742	-
Frame-shit	ENST00000246015	ENST00000311955		TCGA	LD	OV	TCGA-20-1684-01A	PSMF1	chr20	1099545	+	ABRA	chr8	107773742	-
Frame-shit	ENST00000335877	ENST00000311955		TCGA	LD	OV	TCGA-20-1684-01A	PSMF1	chr20	1099545	+	ABRA	chr8	107773742	-
Frame-shit	ENST00000438768	ENST00000311955		TCGA	LD	OV	TCGA-20-1684-01A	PSMF1	chr20	1099545	+	ABRA	chr8	107773742	-
intron-3CDS	ENST00000484891	ENST00000311955		TCGA	LD	OV	TCGA-20-1684-01A	PSMF1	chr20	1099545	+	ABRA	chr8	107773742	-
In-frame	ENST00000396981	ENST00000574876		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
In-frame	ENST00000396981	ENST00000572293		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
In-frame	ENST00000396981	ENST00000269230		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
In-frame	ENST00000396981	ENST00000301396		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
In-frame	ENST00000396981	ENST00000436683		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5CDS-intron	ENST00000396981	ENST00000570823		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5UTR-3CDS	ENST00000572484	ENST00000574876		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5UTR-3CDS	ENST00000572484	ENST00000572293		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5UTR-3CDS	ENST00000572484	ENST00000269230		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5UTR-3CDS	ENST00000572484	ENST00000301396		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5UTR-3CDS	ENST00000572484	ENST00000436683		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
5UTR-intron	ENST00000572484	ENST00000570823		TCGA	LD	OV	TCGA-20-1684-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4580107	-
Frame-shit	ENST00000261692	ENST00000155840		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
Frame-shit	ENST00000261692	ENST00000335475		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
5CDS-intron	ENST00000261692	ENST00000526095		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000538446	ENST00000155840		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000538446	ENST00000335475		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-intron	ENST00000538446	ENST00000526095		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000535979	ENST00000155840		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000535979	ENST00000335475		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-intron	ENST00000535979	ENST00000526095		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000542174	ENST00000155840		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000542174	ENST00000335475		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-intron	ENST00000542174	ENST00000526095		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000544658	ENST00000155840		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-3CDS	ENST00000544658	ENST00000335475		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
intron-intron	ENST00000544658	ENST00000526095		TCGA	LD	OV	TCGA-20-1685-01A	CDK2AP1	chr12	123756111	-	KCNQ1	chr11	2790074	+
Frame-shit	ENST00000299767	ENST00000272438		TCGA	LD	OV	TCGA-20-1685-01A	HSP90B1	chr12	104324342	+	TEX261	chr2	71219113	-
5CDS-5UTR	ENST00000299767	ENST00000466731		TCGA	LD	OV	TCGA-20-1685-01A	HSP90B1	chr12	104324342	+	TEX261	chr2	71219113	-
In-frame	ENST00000317552	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000317552	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
Frame-shit	ENST00000453318	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000453318	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
In-frame	ENST00000380779	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000380779	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
Frame-shit	ENST00000380780	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000380780	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
Frame-shit	ENST00000380785	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000380785	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
In-frame	ENST00000380787	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000380787	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
In-frame	ENST00000380782	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
5CDS-intron	ENST00000380782	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
intron-3CDS	ENST00000479925	ENST00000336338		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
intron-intron	ENST00000479925	ENST00000492438		TCGA	LD	OV	TCGA-20-1685-01A	MID1	chrX	10450520	-	SPAG17	chr1	118598537	-
Frame-shit	ENST00000395135	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000395135	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000395135	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000395135	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000395135	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000395132	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000395132	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000395132	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000395132	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000395132	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000268059	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000268059	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000268059	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000268059	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000268059	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000354026	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000354026	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000354026	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000354026	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000354026	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000268058	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000268058	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000268058	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000268058	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000268058	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000565898	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000565898	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000565898	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000565898	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000565898	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000569477	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000569477	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000569477	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000569477	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000569477	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000569965	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000569965	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000569965	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000569965	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000569965	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000567543	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000567543	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000567543	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000567543	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000567543	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000435786	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000435786	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000435786	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000435786	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000435786	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000436891	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000436891	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000436891	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000436891	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000436891	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000564428	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000564428	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000564428	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000564428	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000564428	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000359928	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000359928	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000359928	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000359928	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000359928	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000563500	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
Frame-shit	ENST00000563500	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000563500	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000563500	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
5CDS-intron	ENST00000563500	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000569161	ENST00000458078		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
intron-3CDS	ENST00000569161	ENST00000436302		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
intron-intron	ENST00000569161	ENST00000435976		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
intron-intron	ENST00000569161	ENST00000359383		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
intron-intron	ENST00000569161	ENST00000494702		TCGA	LD	OV	TCGA-20-1685-01A	PML	chr15	74287282	+	AGBL3	chr7	134819593	+
In-frame	ENST00000316963	ENST00000537855		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000379096		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000518937		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000519303		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000517427		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000520527		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000448733		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000316963	ENST00000379097		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5CDS-5UTR	ENST00000316963	ENST00000523395		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000537855		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000379096		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000518937		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000519303		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000517427		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000520527		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000448733		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000343231	ENST00000379097		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5CDS-5UTR	ENST00000343231	ENST00000523395		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000537855		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000379096		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000518937		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000519303		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000517427		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000520527		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000448733		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
In-frame	ENST00000522007	ENST00000379097		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5CDS-5UTR	ENST00000522007	ENST00000523395		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000537855		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000379096		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000518937		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000519303		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000517427		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000520527		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000448733		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-3CDS	ENST00000519926	ENST00000379097		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
5UTR-5UTR	ENST00000519926	ENST00000523395		TCGA	LD	OV	TCGA-20-1686-01A	LYPLA1	chr8	55013468	-	TPD52	chr8	80954903	-
Frame-shit	ENST00000313735	ENST00000225402		TCGA	LD	OV	TCGA-20-1686-01A	NOS2	chr17	26107793	-	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000313735	ENST00000590321		TCGA	LD	OV	TCGA-20-1686-01A	NOS2	chr17	26107793	-	AATF	chr17	35413901	+
5CDS-5UTR	ENST00000394395	ENST00000580599		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000394395	ENST00000394638		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000394395	ENST00000269053		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000394395	ENST00000394637		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-5UTR	ENST00000586023	ENST00000580599		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000586023	ENST00000394638		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000586023	ENST00000269053		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000586023	ENST00000394637		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-5UTR	ENST00000225396	ENST00000580599		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000225396	ENST00000394638		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000225396	ENST00000269053		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000225396	ENST00000394637		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-5UTR	ENST00000417170	ENST00000580599		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000417170	ENST00000394638		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000417170	ENST00000269053		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
5CDS-intron	ENST00000417170	ENST00000394637		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
intron-5UTR	ENST00000591992	ENST00000580599		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
intron-intron	ENST00000591992	ENST00000394638		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
intron-intron	ENST00000591992	ENST00000269053		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
intron-intron	ENST00000591992	ENST00000394637		TCGA	LD	OV	TCGA-20-1686-01A	TADA2A	chr17	35783715	+	SPACA3	chr17	31302845	+
intron-3CDS	ENST00000301923	ENST00000595013		TCGA	LD	OV	TCGA-20-1686-01A	TNRC6B	chr22	40608064	+	SCGB1B2P	chr19	35068600	-
intron-3CDS	ENST00000402203	ENST00000595013		TCGA	LD	OV	TCGA-20-1686-01A	TNRC6B	chr22	40608064	+	SCGB1B2P	chr19	35068600	-
intron-3CDS	ENST00000454349	ENST00000595013		TCGA	LD	OV	TCGA-20-1686-01A	TNRC6B	chr22	40608064	+	SCGB1B2P	chr19	35068600	-
intron-3CDS	ENST00000335727	ENST00000595013		TCGA	LD	OV	TCGA-20-1686-01A	TNRC6B	chr22	40608064	+	SCGB1B2P	chr19	35068600	-
intron-3CDS	ENST00000497559	ENST00000595013		TCGA	LD	OV	TCGA-20-1686-01A	TNRC6B	chr22	40608064	+	SCGB1B2P	chr19	35068600	-
In-frame	ENST00000592273	ENST00000591090		TCGA	LD	OV	TCGA-20-1687-01A	C19orf43	chr19	12845127	-	ASNA1	chr19	12856191	+
In-frame	ENST00000592273	ENST00000357332		TCGA	LD	OV	TCGA-20-1687-01A	C19orf43	chr19	12845127	-	ASNA1	chr19	12856191	+
In-frame	ENST00000242784	ENST00000591090		TCGA	LD	OV	TCGA-20-1687-01A	C19orf43	chr19	12845127	-	ASNA1	chr19	12856191	+
In-frame	ENST00000242784	ENST00000357332		TCGA	LD	OV	TCGA-20-1687-01A	C19orf43	chr19	12845127	-	ASNA1	chr19	12856191	+
intron-3CDS	ENST00000588213	ENST00000591090		TCGA	LD	OV	TCGA-20-1687-01A	C19orf43	chr19	12845127	-	ASNA1	chr19	12856191	+
intron-3CDS	ENST00000588213	ENST00000357332		TCGA	LD	OV	TCGA-20-1687-01A	C19orf43	chr19	12845127	-	ASNA1	chr19	12856191	+
In-frame	ENST00000269346	ENST00000379226		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
5CDS-5UTR	ENST00000269346	ENST00000476598		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
5CDS-5UTR	ENST00000269346	ENST00000379220		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
In-frame	ENST00000529107	ENST00000379226		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
5CDS-5UTR	ENST00000529107	ENST00000476598		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
5CDS-5UTR	ENST00000529107	ENST00000379220		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
intron-3CDS	ENST00000534346	ENST00000379226		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
intron-5UTR	ENST00000534346	ENST00000476598		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
intron-5UTR	ENST00000534346	ENST00000379220		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
intron-3CDS	ENST00000441391	ENST00000379226		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
intron-5UTR	ENST00000441391	ENST00000476598		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
intron-5UTR	ENST00000441391	ENST00000379220		TCGA	LD	OV	TCGA-20-1687-01A	TTYH2	chr17	72227138	+	APOO	chrX	23858494	-
Frame-shit	ENST00000228825	ENST00000551964		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000339433		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000359972		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
In-frame	ENST00000228825	ENST00000333991		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000357310		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000552268		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000550527		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000547045		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
Frame-shit	ENST00000228825	ENST00000549007		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5CDS-intron	ENST00000228825	ENST00000547743		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5CDS-intron	ENST00000228825	ENST00000547666		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000551964		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000339433		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000359972		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000333991		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000357310		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000552268		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000550527		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000547045		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000471641	ENST00000549007		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-intron	ENST00000471641	ENST00000547743		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-intron	ENST00000471641	ENST00000547666		TCGA	LD	OV	TCGA-23-1022-01A	ARPC3	chr12	110883257	-	APAF1	chr12	99126198	+
5UTR-3CDS	ENST00000339468	ENST00000215832		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000339468	ENST00000398822		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000339468	ENST00000544786		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-intron	ENST00000339468	ENST00000491588		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000403503	ENST00000215832		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000403503	ENST00000398822		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000403503	ENST00000544786		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
5UTR-intron	ENST00000403503	ENST00000491588		TCGA	LD	OV	TCGA-23-1022-01A	YPEL1	chr22	22089904	-	MAPK1	chr22	22162135	-
Frame-shit	ENST00000248975	ENST00000535622		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000400246		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000266091		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-3UTR	ENST00000248975	ENST00000382105		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-3UTR	ENST00000248975	ENST00000400249		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-3UTR	ENST00000248975	ENST00000382112		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000382111		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000400248		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000494060		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000536766		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000400242		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000248975	ENST00000539165		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
Frame-shit	ENST00000397492	ENST00000535622		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000400246		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000266091		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-3UTR	ENST00000397492	ENST00000382105		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-3UTR	ENST00000397492	ENST00000400249		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-3UTR	ENST00000397492	ENST00000382112		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000382111		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000400248		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000494060		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000536766		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000400242		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5CDS-intron	ENST00000397492	ENST00000539165		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-3CDS	ENST00000471374	ENST00000535622		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000400246		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000266091		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-3UTR	ENST00000471374	ENST00000382105		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-3UTR	ENST00000471374	ENST00000400249		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-3UTR	ENST00000471374	ENST00000382112		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000382111		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000400248		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000494060		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000536766		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000400242		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
intron-intron	ENST00000471374	ENST00000539165		TCGA	LD	OV	TCGA-23-1022-01A	YWHAH	chr22	32340806	+	DEPDC5	chr22	32297728	+
5UTR-intron	ENST00000418115	ENST00000392859		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000418115	ENST00000359415		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000418115	ENST00000534182		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000418115	ENST00000264028		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000454011	ENST00000392859		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000454011	ENST00000359415		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000454011	ENST00000534182		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000454011	ENST00000264028		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000422781	ENST00000392859		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000422781	ENST00000359415		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000422781	ENST00000534182		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5UTR-intron	ENST00000422781	ENST00000264028		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
intron-intron	ENST00000265538	ENST00000392859		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
intron-intron	ENST00000265538	ENST00000359415		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
intron-intron	ENST00000265538	ENST00000534182		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
intron-intron	ENST00000265538	ENST00000264028		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49449253	-	ARCN1	chr11	118451961	+
5CDS-5UTR	ENST00000418115	ENST00000421598		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49412867	-	BSN-AS2	chr3	49588875	-
5CDS-5UTR	ENST00000454011	ENST00000421598		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49412867	-	BSN-AS2	chr3	49588875	-
5CDS-5UTR	ENST00000422781	ENST00000421598		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49412867	-	BSN-AS2	chr3	49588875	-
intron-5UTR	ENST00000265538	ENST00000421598		TCGA	LD	OV	TCGA-23-1024-01A	RHOA	chr3	49412867	-	BSN-AS2	chr3	49588875	-
5UTR-3CDS	ENST00000454876	ENST00000306077		TCGA	LD	OV	TCGA-23-1024-01A	SLC6A6	chr3	14444355	+	TMEM43	chr3	14172322	+
5UTR-3CDS	ENST00000360861	ENST00000306077		TCGA	LD	OV	TCGA-23-1024-01A	SLC6A6	chr3	14444355	+	TMEM43	chr3	14172322	+
5UTR-3CDS	ENST00000416216	ENST00000306077		TCGA	LD	OV	TCGA-23-1024-01A	SLC6A6	chr3	14444355	+	TMEM43	chr3	14172322	+
3UTR-3CDS	ENST00000484191	ENST00000306077		TCGA	LD	OV	TCGA-23-1024-01A	SLC6A6	chr3	14444355	+	TMEM43	chr3	14172322	+
5CDS-3UTR	ENST00000371268	ENST00000367311		TCGA	LD	OV	TCGA-23-1024-01A	TMEM61	chr1	55446753	+	PHLDA3	chr1	201435306	-
5CDS-5UTR	ENST00000371268	ENST00000485436		TCGA	LD	OV	TCGA-23-1024-01A	TMEM61	chr1	55446753	+	PHLDA3	chr1	201435306	-
5CDS-3UTR	ENST00000371268	ENST00000367309		TCGA	LD	OV	TCGA-23-1024-01A	TMEM61	chr1	55446753	+	PHLDA3	chr1	201435306	-
In-frame	ENST00000535206	ENST00000275764		TCGA	LD	OV	TCGA-23-1026-01B	B4GALT1	chr9	33166756	-	STRA8	chr7	134925271	+
In-frame	ENST00000379731	ENST00000275764		TCGA	LD	OV	TCGA-23-1026-01B	B4GALT1	chr9	33166756	-	STRA8	chr7	134925271	+
intron-3CDS	ENST00000541851	ENST00000275764		TCGA	LD	OV	TCGA-23-1026-01B	B4GALT1	chr9	33166756	-	STRA8	chr7	134925271	+
Frame-shit	ENST00000589222	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000589222	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000589222	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
Frame-shit	ENST00000407086	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000407086	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000407086	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
Frame-shit	ENST00000390652	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000390652	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000390652	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
Frame-shit	ENST00000408905	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000408905	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000408905	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
Frame-shit	ENST00000588462	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000588462	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000588462	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
Frame-shit	ENST00000585744	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000585744	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000585744	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
Frame-shit	ENST00000588874	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000588874	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
In-frame	ENST00000588874	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
intron-3CDS	ENST00000585812	ENST00000352529		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
intron-3CDS	ENST00000585812	ENST00000252729		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
intron-3CDS	ENST00000585812	ENST00000346968		TCGA	LD	OV	TCGA-23-1026-01B	BCAS3	chr17	59024713	+	CACNG6	chr19	54515205	+
5UTR-3CDS	ENST00000202028	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000202028	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000202028	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000373950	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000373950	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000373950	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000441639	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000441639	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
5UTR-3CDS	ENST00000441639	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000373946	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000373946	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000373946	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000338074	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000338074	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000338074	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000373941	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000373941	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000373941	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000479336	ENST00000373973		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000479336	ENST00000349339		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
intron-3CDS	ENST00000479336	ENST00000538900		TCGA	LD	OV	TCGA-23-1026-01B	EPB41L1	chr20	34700402	+	CNBD2	chr20	34618279	+
In-frame	ENST00000547956	ENST00000299767		TCGA	LD	OV	TCGA-23-1028-01A	CHST11	chr12	104995769	+	HSP90B1	chr12	104333287	+
In-frame	ENST00000549260	ENST00000299767		TCGA	LD	OV	TCGA-23-1028-01A	CHST11	chr12	104995769	+	HSP90B1	chr12	104333287	+
In-frame	ENST00000303694	ENST00000299767		TCGA	LD	OV	TCGA-23-1028-01A	CHST11	chr12	104995769	+	HSP90B1	chr12	104333287	+
In-frame	ENST00000546689	ENST00000299767		TCGA	LD	OV	TCGA-23-1028-01A	CHST11	chr12	104995769	+	HSP90B1	chr12	104333287	+
intron-3CDS	ENST00000550711	ENST00000299767		TCGA	LD	OV	TCGA-23-1028-01A	CHST11	chr12	104995769	+	HSP90B1	chr12	104333287	+
In-frame	ENST00000264501	ENST00000343098		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
In-frame	ENST00000264501	ENST00000424728		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000264501	ENST00000465275		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000264501	ENST00000546113		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
In-frame	ENST00000455637	ENST00000343098		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
In-frame	ENST00000455637	ENST00000424728		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000455637	ENST00000465275		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000455637	ENST00000546113		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
In-frame	ENST00000388738	ENST00000343098		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
In-frame	ENST00000388738	ENST00000424728		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000388738	ENST00000465275		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
5CDS-intron	ENST00000388738	ENST00000546113		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
intron-3CDS	ENST00000495260	ENST00000343098		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
intron-3CDS	ENST00000495260	ENST00000424728		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
intron-intron	ENST00000495260	ENST00000465275		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
intron-intron	ENST00000495260	ENST00000546113		TCGA	LD	OV	TCGA-23-1028-01A	KIAA1109	chr4	123210347	+	FSIP2	chr2	186692883	+
intron-3CDS	ENST00000427522	ENST00000370069		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000427522	ENST00000266068		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000427522	ENST00000370077		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000467148	ENST00000370069		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000467148	ENST00000266068		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000467148	ENST00000370077		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000479540	ENST00000370069		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000479540	ENST00000266068		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
intron-3CDS	ENST00000479540	ENST00000370077		TCGA	LD	OV	TCGA-23-1030-01A	HELZ2	chr20	62197437	-	GMEB2	chr20	62221782	-
5CDS-intron	ENST00000579662	ENST00000423245		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000579662	ENST00000317905		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000579662	ENST00000420326		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000579662	ENST00000340830		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000579662	ENST00000584999		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000579662	ENST00000443199		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000339591	ENST00000423245		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000339591	ENST00000317905		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000339591	ENST00000420326		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000339591	ENST00000340830		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000339591	ENST00000584999		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000339591	ENST00000443199		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000200181	ENST00000423245		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000200181	ENST00000317905		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000200181	ENST00000420326		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000200181	ENST00000340830		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000200181	ENST00000584999		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000200181	ENST00000443199		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000450894	ENST00000423245		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000450894	ENST00000317905		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000450894	ENST00000420326		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000450894	ENST00000340830		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000450894	ENST00000584999		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000450894	ENST00000443199		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000449880	ENST00000423245		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000449880	ENST00000317905		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000449880	ENST00000420326		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000449880	ENST00000340830		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000449880	ENST00000584999		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
5CDS-intron	ENST00000449880	ENST00000443199		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
3UTR-intron	ENST00000584558	ENST00000423245		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
3UTR-intron	ENST00000584558	ENST00000317905		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
3UTR-intron	ENST00000584558	ENST00000420326		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
3UTR-intron	ENST00000584558	ENST00000340830		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
3UTR-intron	ENST00000584558	ENST00000584999		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
3UTR-intron	ENST00000584558	ENST00000443199		TCGA	LD	OV	TCGA-23-1030-01A	ITGB4	chr17	73727028	+	RECQL5	chr17	73626566	-
Frame-shit	ENST00000261349	ENST00000014930		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
5CDS-5UTR	ENST00000261349	ENST00000540916		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
5CDS-intron	ENST00000261349	ENST00000536942		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
Frame-shit	ENST00000543091	ENST00000014930		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
5CDS-5UTR	ENST00000543091	ENST00000540916		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
5CDS-intron	ENST00000543091	ENST00000536942		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
intron-3CDS	ENST00000540415	ENST00000014930		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
intron-5UTR	ENST00000540415	ENST00000540916		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
intron-intron	ENST00000540415	ENST00000536942		TCGA	LD	OV	TCGA-23-1030-01A	LRP6	chr12	12301876	-	HEBP1	chr12	13128413	-
In-frame	ENST00000423230	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000423230	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
5CDS-intron	ENST00000423230	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000398656	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000398656	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
5CDS-intron	ENST00000398656	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000534366	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000534366	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
5CDS-intron	ENST00000534366	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000528919	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000528919	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
5CDS-intron	ENST00000528919	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000326134	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
In-frame	ENST00000326134	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
5CDS-intron	ENST00000326134	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
3UTR-3CDS	ENST00000527071	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
3UTR-3CDS	ENST00000527071	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
3UTR-intron	ENST00000527071	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000544576	ENST00000392133		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000544576	ENST00000392132		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
intron-intron	ENST00000544576	ENST00000471649		TCGA	LD	OV	TCGA-23-1030-01A	MROH1	chr8	145255444	+	XRCC5	chr2	217054948	+
intron-3CDS	ENST00000405409	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000405409	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000414461	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000414461	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000449924	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000449924	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000262829	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000262829	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000397303	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000397303	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
5UTR-3CDS	ENST00000359369	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
5UTR-intron	ENST00000359369	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-3CDS	ENST00000416721	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
intron-intron	ENST00000416721	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
Frame-shit	ENST00000438146	ENST00000300105		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
5CDS-intron	ENST00000438146	ENST00000480002		TCGA	LD	OV	TCGA-23-1030-01A	RBFOX2	chr22	36334895	-	CACNG2	chr22	36983595	-
In-frame	ENST00000399537	ENST00000425013		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
In-frame	ENST00000399537	ENST00000389902		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000399537	ENST00000469375		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
In-frame	ENST00000430969	ENST00000425013		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
In-frame	ENST00000430969	ENST00000389902		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000430969	ENST00000469375		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
intron-intron	ENST00000399434	ENST00000469375		TCGA	LD	OV	TCGA-23-1030-01A	TNRC18	chr7	5410006	-	RNF216	chr7	5692141	-
5UTR-5UTR	ENST00000350425	ENST00000481445		TCGA	LD	OV	TCGA-23-1032-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-3UTR	ENST00000350425	ENST00000475465		TCGA	LD	OV	TCGA-23-1032-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-5UTR	ENST00000343533	ENST00000481445		TCGA	LD	OV	TCGA-23-1032-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-3UTR	ENST00000343533	ENST00000475465		TCGA	LD	OV	TCGA-23-1032-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-5UTR	ENST00000341514	ENST00000481445		TCGA	LD	OV	TCGA-23-1032-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
5UTR-3UTR	ENST00000341514	ENST00000475465		TCGA	LD	OV	TCGA-23-1032-01A	ATP7A	chrX	77166332	+	COX7B	chrX	77154974	+
Frame-shit	ENST00000392226	ENST00000398457		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000462050		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000347800		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000398449		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000361802		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000343687		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000398437		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000392226	ENST00000340588		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
Frame-shit	ENST00000262626	ENST00000398457		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000462050		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000347800		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000398449		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000361802		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000343687		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000398437		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000262626	ENST00000340588		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3CDS	ENST00000597419	ENST00000398457		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000462050		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000347800		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000398449		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000361802		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000343687		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000398437		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000597419	ENST00000340588		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3CDS	ENST00000600675	ENST00000398457		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000462050		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000347800		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000398449		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000361802		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000343687		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000398437		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000600675	ENST00000340588		TCGA	LD	OV	TCGA-23-1032-01A	HPN	chr19	35540420	+	ABCG1	chr21	43704670	+
intron-3UTR	ENST00000397910	ENST00000253048		TCGA	LD	OV	TCGA-23-1032-01A	MUC16	chr19	9072451	-	ZC3H4	chr19	47568759	-
intron-5UTR	ENST00000397910	ENST00000594019		TCGA	LD	OV	TCGA-23-1032-01A	MUC16	chr19	9072451	-	ZC3H4	chr19	47568759	-
intron-3UTR	ENST00000380951	ENST00000253048		TCGA	LD	OV	TCGA-23-1032-01A	MUC16	chr19	9072451	-	ZC3H4	chr19	47568759	-
intron-5UTR	ENST00000380951	ENST00000594019		TCGA	LD	OV	TCGA-23-1032-01A	MUC16	chr19	9072451	-	ZC3H4	chr19	47568759	-
intron-3UTR	ENST00000596956	ENST00000253048		TCGA	LD	OV	TCGA-23-1032-01A	MUC16	chr19	9072451	-	ZC3H4	chr19	47568759	-
intron-5UTR	ENST00000596956	ENST00000594019		TCGA	LD	OV	TCGA-23-1032-01A	MUC16	chr19	9072451	-	ZC3H4	chr19	47568759	-
intron-intron	ENST00000359282	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000359282	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000359282	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000603815	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000603815	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000603815	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000437231	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000437231	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000437231	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000447282	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000447282	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000447282	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000549863	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000549863	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000549863	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000359462	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000359462	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000359462	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000546463	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000546463	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000546463	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000552296	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000552296	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000552296	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000552819	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000552819	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000552819	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000455667	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000455667	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000455667	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000439930	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000439930	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000439930	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000548933	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000548933	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000548933	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000541275	ENST00000229201		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000541275	ENST00000553532		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
intron-intron	ENST00000541275	ENST00000554616		TCGA	LD	OV	TCGA-23-1032-01A	PCBP2	chr12	53854443	+	TIMELESS	chr12	56824088	-
In-frame	ENST00000310032	ENST00000321442		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000310032	ENST00000515791		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000310032	ENST00000502393		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-3CDS	ENST00000405525	ENST00000321442		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-intron	ENST00000405525	ENST00000515791		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-intron	ENST00000405525	ENST00000502393		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
Frame-shit	ENST00000298564	ENST00000321442		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000298564	ENST00000515791		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000298564	ENST00000502393		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
In-frame	ENST00000508164	ENST00000321442		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000508164	ENST00000515791		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000508164	ENST00000502393		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
In-frame	ENST00000503045	ENST00000321442		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000503045	ENST00000515791		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
5CDS-intron	ENST00000503045	ENST00000502393		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-3CDS	ENST00000515708	ENST00000321442		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-intron	ENST00000515708	ENST00000515791		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-intron	ENST00000515708	ENST00000502393		TCGA	LD	OV	TCGA-23-1032-01A	TSPAN17	chr5	176083957	+	SFXN1	chr5	174938454	+
intron-3CDS	ENST00000373314	ENST00000372478		TCGA	LD	OV	TCGA-23-1107-01A	FAM129B	chr9	130331099	-	C9orf50	chr9	132375530	-
Frame-shit	ENST00000373312	ENST00000372478		TCGA	LD	OV	TCGA-23-1107-01A	FAM129B	chr9	130331099	-	C9orf50	chr9	132375530	-
5UTR-3CDS	ENST00000468379	ENST00000372478		TCGA	LD	OV	TCGA-23-1107-01A	FAM129B	chr9	130331099	-	C9orf50	chr9	132375530	-
intron-5UTR	ENST00000384994	ENST00000309880		TCGA	LD	OV	TCGA-23-1107-01A	NEAT1	chr11	65204137	+	TIGD3	chr11	65123264	+
5CDS-intron	ENST00000298198	ENST00000488498		TCGA	LD	OV	TCGA-23-1107-01A	PGM2L1	chr11	74079537	-	C1orf61	chr1	156384545	-
5CDS-intron	ENST00000298198	ENST00000368243		TCGA	LD	OV	TCGA-23-1107-01A	PGM2L1	chr11	74079537	-	C1orf61	chr1	156384545	-
5CDS-intron	ENST00000355072	ENST00000290974		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-intron	ENST00000355072	ENST00000511071		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-intron	ENST00000355072	ENST00000515312		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-intron	ENST00000355072	ENST00000515169		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-intron	ENST00000355072	ENST00000509171		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-intron	ENST00000355072	ENST00000503000		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-intron	ENST00000355072	ENST00000508471		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
5CDS-5UTR	ENST00000355072	ENST00000505421		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000290974		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000511071		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000515312		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000515169		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000509171		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000503000		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-intron	ENST00000513806	ENST00000508471		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
intron-5UTR	ENST00000513806	ENST00000505421		TCGA	LD	OV	TCGA-23-1109-01A	HTT	chr4	3184197	+	ZFYVE28	chr4	2344930	-
Frame-shit	ENST00000398344	ENST00000356341		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000398344	ENST00000530617		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000398344	ENST00000278568		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000398344	ENST00000528203		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
5CDS-intron	ENST00000398344	ENST00000525542		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000350608	ENST00000356341		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000350608	ENST00000530617		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000350608	ENST00000278568		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000350608	ENST00000528203		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
5CDS-intron	ENST00000350608	ENST00000525542		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000404092	ENST00000356341		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000404092	ENST00000530617		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000404092	ENST00000278568		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
In-frame	ENST00000404092	ENST00000528203		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
5CDS-intron	ENST00000404092	ENST00000525542		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000403754	ENST00000356341		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000403754	ENST00000530617		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000403754	ENST00000278568		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000403754	ENST00000528203		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
5CDS-intron	ENST00000403754	ENST00000525542		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000430101	ENST00000356341		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000430101	ENST00000530617		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000430101	ENST00000278568		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
Frame-shit	ENST00000430101	ENST00000528203		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
5CDS-intron	ENST00000430101	ENST00000525542		TCGA	LD	OV	TCGA-23-1110-01A	DDT	chr22	24315957	-	PAK1	chr11	77066887	-
5UTR-intron	ENST00000419152	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000419152	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000419152	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000419152	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000419152	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000532400	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000532400	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000532400	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000532400	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000532400	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000532741	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000532741	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000532741	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000532741	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000532741	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000317198	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000317198	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000317198	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000317198	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-intron	ENST00000317198	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000526838	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000526838	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000526838	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000526838	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000526838	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000442189	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000442189	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000442189	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000442189	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000442189	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000528610	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000528610	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000528610	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000528610	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000528610	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000423316	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000423316	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000423316	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000423316	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000423316	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000395119	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000395119	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000395119	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000395119	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000395119	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000529272	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000529272	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000529272	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000529272	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000529272	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531621	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531621	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531621	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531621	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531621	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000524624	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000524624	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000524624	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000524624	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000524624	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531770	ENST00000524325		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531770	ENST00000307180		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531770	ENST00000520166		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531770	ENST00000519651		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
5UTR-intron	ENST00000531770	ENST00000518928		TCGA	LD	OV	TCGA-23-1110-01A	EEF1D	chr8	144679518	-	TSNARE1	chr8	143313362	-
intron-3CDS	ENST00000328631	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000328631	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000328631	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000340879	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000340879	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000340879	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000432678	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000432678	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000432678	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000431721	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000431721	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000431721	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000449610	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000449610	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000449610	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000413298	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000413298	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000413298	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000450045	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000450045	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000450045	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
Frame-shit	ENST00000446860	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
Frame-shit	ENST00000446860	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
5CDS-intron	ENST00000446860	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000417896	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000417896	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000417896	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
Frame-shit	ENST00000443964	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
Frame-shit	ENST00000443964	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
5CDS-intron	ENST00000443964	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000436134	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000436134	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000436134	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000453202	ENST00000454817		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-3CDS	ENST00000453202	ENST00000328333		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
intron-intron	ENST00000453202	ENST00000470076		TCGA	LD	OV	TCGA-23-1110-01A	IP6K2	chr3	48752822	-	COL7A1	chr3	48623408	-
In-frame	ENST00000359282	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359282	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359282	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359282	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000603815	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000603815	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000603815	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000603815	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000437231	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000437231	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000437231	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000437231	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000447282	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000447282	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000447282	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000447282	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
intron-3CDS	ENST00000549863	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
intron-3CDS	ENST00000549863	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
intron-3CDS	ENST00000549863	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
intron-3CDS	ENST00000549863	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359462	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359462	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359462	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000359462	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000546463	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000546463	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000546463	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000546463	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552296	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552296	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552296	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552296	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552819	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552819	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552819	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000552819	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000455667	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000455667	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000455667	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000455667	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000439930	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000439930	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000439930	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000439930	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000548933	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000548933	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000548933	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000548933	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000541275	ENST00000162749		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000541275	ENST00000540022		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000541275	ENST00000366159		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000541275	ENST00000437813		TCGA	LD	OV	TCGA-23-1111-01A	PCBP2	chr12	53859757	+	TNFRSF1A	chr12	6443410	-
In-frame	ENST00000296484	ENST00000232975		TCGA	LD	OV	TCGA-23-1111-01A	POC1A	chr3	52156395	-	TNNC1	chr3	52486529	-
In-frame	ENST00000394970	ENST00000232975		TCGA	LD	OV	TCGA-23-1111-01A	POC1A	chr3	52156395	-	TNNC1	chr3	52486529	-
Frame-shit	ENST00000474012	ENST00000232975		TCGA	LD	OV	TCGA-23-1111-01A	POC1A	chr3	52156395	-	TNNC1	chr3	52486529	-
Frame-shit	ENST00000264639	ENST00000348931		TCGA	LD	OV	TCGA-23-1111-01A	PSMD3	chr17	38142965	+	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000264639	ENST00000584588		TCGA	LD	OV	TCGA-23-1111-01A	PSMD3	chr17	38142965	+	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000264639	ENST00000377940		TCGA	LD	OV	TCGA-23-1111-01A	PSMD3	chr17	38142965	+	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000541736	ENST00000348931		TCGA	LD	OV	TCGA-23-1111-01A	PSMD3	chr17	38142965	+	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000541736	ENST00000584588		TCGA	LD	OV	TCGA-23-1111-01A	PSMD3	chr17	38142965	+	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000541736	ENST00000377940		TCGA	LD	OV	TCGA-23-1111-01A	PSMD3	chr17	38142965	+	ZPBP2	chr17	38026947	+
In-frame	ENST00000437398	ENST00000355630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000437398	ENST00000396617		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000437398	ENST00000402042		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000437398	ENST00000466278		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000437398	ENST00000407029		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000437398	ENST00000402630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000314328	ENST00000355630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000314328	ENST00000396617		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000314328	ENST00000402042		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000314328	ENST00000466278		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000314328	ENST00000407029		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000314328	ENST00000402630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000541492	ENST00000355630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000541492	ENST00000396617		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
In-frame	ENST00000541492	ENST00000402042		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000541492	ENST00000466278		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000541492	ENST00000407029		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
5CDS-intron	ENST00000541492	ENST00000402630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
intron-3CDS	ENST00000416735	ENST00000355630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
intron-3CDS	ENST00000416735	ENST00000396617		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
intron-3CDS	ENST00000416735	ENST00000402042		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
intron-intron	ENST00000416735	ENST00000466278		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
intron-intron	ENST00000416735	ENST00000407029		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
intron-intron	ENST00000416735	ENST00000402630		TCGA	LD	OV	TCGA-23-1111-01A	SPECC1L	chr22	24743144	+	MKL1	chr22	40820385	-
Frame-shit	ENST00000311234	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000311234	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5CDS-intron	ENST00000311234	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000398119	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000398119	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5CDS-intron	ENST00000398119	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-3CDS	ENST00000497989	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-3CDS	ENST00000497989	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-intron	ENST00000497989	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-3CDS	ENST00000425000	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-3CDS	ENST00000425000	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-intron	ENST00000425000	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-3CDS	ENST00000490542	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-3CDS	ENST00000490542	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-intron	ENST00000490542	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000463928	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000463928	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5CDS-intron	ENST00000463928	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000420668	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
Frame-shit	ENST00000420668	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5CDS-intron	ENST00000420668	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-3CDS	ENST00000491723	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-3CDS	ENST00000491723	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-intron	ENST00000491723	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-3CDS	ENST00000442263	ENST00000326840		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-3CDS	ENST00000442263	ENST00000326857		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
intron-intron	ENST00000442263	ENST00000469648		TCGA	LD	OV	TCGA-23-1114-01B	INTS6	chr13	52025161	-	DCBLD2	chr3	98600611	-
5UTR-5UTR	ENST00000234296	ENST00000450751		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000563800		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000398591		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000562019		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000423133		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000568128		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000564522		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000261723		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000568757		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000234296	ENST00000398592		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-intron	ENST00000234296	ENST00000563519		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000450751		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000563800		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000398591		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000562019		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000423133		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000568128		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000564522		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000261723		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000568757		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-5UTR	ENST00000467605	ENST00000398592		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
5UTR-intron	ENST00000467605	ENST00000563519		TCGA	LD	OV	TCGA-23-1114-01B	ORC2	chr2	201828213	-	CPEB1	chr15	83240282	-
Frame-shit	ENST00000477973	ENST00000487694		TCGA	LD	OV	TCGA-23-1114-01B	RYBP	chr3	72495647	-	ROBO2	chr3	77526565	+
Frame-shit	ENST00000477973	ENST00000461745		TCGA	LD	OV	TCGA-23-1114-01B	RYBP	chr3	72495647	-	ROBO2	chr3	77526565	+
Frame-shit	ENST00000477973	ENST00000332191		TCGA	LD	OV	TCGA-23-1114-01B	RYBP	chr3	72495647	-	ROBO2	chr3	77526565	+
5CDS-intron	ENST00000477973	ENST00000469233		TCGA	LD	OV	TCGA-23-1114-01B	RYBP	chr3	72495647	-	ROBO2	chr3	77526565	+
5UTR-3CDS	ENST00000299980	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
5UTR-3CDS	ENST00000423132	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
5UTR-3CDS	ENST00000433195	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
5UTR-3CDS	ENST00000569748	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
5UTR-3CDS	ENST00000393512	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
5UTR-3CDS	ENST00000570297	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
intron-3CDS	ENST00000564155	ENST00000319550		TCGA	LD	OV	TCGA-23-1116-01A	AP1G1	chr16	71842666	-	NT5DC1	chr6	116542217	+
In-frame	ENST00000301607	ENST00000307877		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
In-frame	ENST00000301607	ENST00000539137		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
In-frame	ENST00000301607	ENST00000355113		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000301607	ENST00000602720		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000301607	ENST00000542536		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
In-frame	ENST00000586740	ENST00000307877		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
In-frame	ENST00000586740	ENST00000539137		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
In-frame	ENST00000586740	ENST00000355113		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000586740	ENST00000602720		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
5CDS-5UTR	ENST00000586740	ENST00000542536		TCGA	LD	OV	TCGA-23-1116-01A	EVPL	chr17	74013820	-	SRP68	chr17	74046607	-
In-frame	ENST00000354300	ENST00000228827		TCGA	LD	OV	TCGA-23-1116-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110903019	-
In-frame	ENST00000354300	ENST00000543199		TCGA	LD	OV	TCGA-23-1116-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110903019	-
In-frame	ENST00000354300	ENST00000537466		TCGA	LD	OV	TCGA-23-1116-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110903019	-
5CDS-5UTR	ENST00000354300	ENST00000552180		TCGA	LD	OV	TCGA-23-1116-01A	PPTC7	chr12	111020614	-	GPN3	chr12	110903019	-
Frame-shit	ENST00000353487	ENST00000377035		TCGA	LD	OV	TCGA-23-1116-01A	SPPL3	chr12	121248612	-	IL31	chr12	122657288	-
3UTR-3CDS	ENST00000577702	ENST00000579585		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
3UTR-3CDS	ENST00000577702	ENST00000584573		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
3UTR-3CDS	ENST00000577702	ENST00000361733		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
3UTR-3CDS	ENST00000577702	ENST00000361357		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
3UTR-3CDS	ENST00000577702	ENST00000577395		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
3UTR-intron	ENST00000577702	ENST00000577784		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000310827	ENST00000579585		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000310827	ENST00000584573		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000310827	ENST00000361733		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000310827	ENST00000361357		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000310827	ENST00000577395		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
5CDS-intron	ENST00000310827	ENST00000577784		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000431926	ENST00000579585		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000431926	ENST00000584573		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000431926	ENST00000361733		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000431926	ENST00000361357		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000431926	ENST00000577395		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
5CDS-intron	ENST00000431926	ENST00000577784		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000415273	ENST00000579585		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000415273	ENST00000584573		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000415273	ENST00000361733		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000415273	ENST00000361357		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
Frame-shit	ENST00000415273	ENST00000577395		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
5CDS-intron	ENST00000415273	ENST00000577784		TCGA	LD	OV	TCGA-23-1118-01A	DCAF7	chr17	61628176	+	MAP3K3	chr17	61729917	+
5CDS-5UTR	ENST00000420083	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000420083	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000420083	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000420083	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000420083	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000449870	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000449870	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000449870	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000449870	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000449870	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000318511	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000318511	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000318511	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000318511	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000318511	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000407004	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000407004	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000407004	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000407004	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000407004	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000589998	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000589998	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000589998	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000589998	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000589998	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000250241	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000250241	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000250241	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000250241	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000250241	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000592763	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000592763	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000592763	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000592763	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000592763	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000588657	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000588657	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000588657	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000588657	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000588657	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-5UTR	ENST00000590261	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000590261	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000590261	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000590261	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5CDS-intron	ENST00000590261	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
intron-5UTR	ENST00000586544	ENST00000537031		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
intron-intron	ENST00000586544	ENST00000310594		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
intron-intron	ENST00000586544	ENST00000397196		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
intron-intron	ENST00000586544	ENST00000542408		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
intron-intron	ENST00000586544	ENST00000545747		TCGA	LD	OV	TCGA-23-1118-01A	ILF3	chr19	10791806	+	WNT5B	chr12	1683834	+
5UTR-intron	ENST00000599470	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000599470	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000599470	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000321944	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000321944	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000321944	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000358301	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000358301	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000358301	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
3UTR-intron	ENST00000597766	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
3UTR-intron	ENST00000597766	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
3UTR-intron	ENST00000597766	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000593690	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000593690	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000593690	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000599386	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000599386	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
5UTR-intron	ENST00000599386	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
intron-intron	ENST00000435673	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
intron-intron	ENST00000435673	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
intron-intron	ENST00000435673	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
intron-intron	ENST00000360442	ENST00000352529		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
intron-intron	ENST00000360442	ENST00000252729		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
intron-intron	ENST00000360442	ENST00000346968		TCGA	LD	OV	TCGA-23-1118-01A	PAK4	chr19	39616559	+	CACNG6	chr19	54501493	+
Frame-shit	ENST00000308677	ENST00000263382		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
Frame-shit	ENST00000308677	ENST00000592798		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
Frame-shit	ENST00000308677	ENST00000474890		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000350356	ENST00000263382		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000350356	ENST00000592798		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000350356	ENST00000474890		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
Frame-shit	ENST00000590853	ENST00000263382		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
Frame-shit	ENST00000590853	ENST00000592798		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
Frame-shit	ENST00000590853	ENST00000474890		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000589994	ENST00000263382		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000589994	ENST00000592798		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000589994	ENST00000474890		TCGA	LD	OV	TCGA-23-1118-01A	PRKACA	chr19	14228314	-	ASF1B	chr19	14237049	-
intron-3CDS	ENST00000359008	ENST00000585892		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000359008	ENST00000314646		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000359008	ENST00000359692		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000359008	ENST00000389253		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000359008	ENST00000355667		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000359008	ENST00000408974		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3UTR	ENST00000359008	ENST00000591819		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000328189	ENST00000585892		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000328189	ENST00000314646		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000328189	ENST00000359692		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000328189	ENST00000389253		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000328189	ENST00000355667		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000328189	ENST00000408974		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5CDS-3UTR	ENST00000328189	ENST00000591819		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000369458	ENST00000585892		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000369458	ENST00000314646		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000369458	ENST00000359692		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000369458	ENST00000389253		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000369458	ENST00000355667		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000369458	ENST00000408974		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5CDS-3UTR	ENST00000369458	ENST00000591819		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000539893	ENST00000585892		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000539893	ENST00000314646		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000539893	ENST00000359692		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000539893	ENST00000389253		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000539893	ENST00000355667		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000539893	ENST00000408974		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
intron-3UTR	ENST00000539893	ENST00000591819		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000463461	ENST00000585892		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000463461	ENST00000314646		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000463461	ENST00000359692		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000463461	ENST00000389253		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000463461	ENST00000355667		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000463461	ENST00000408974		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5UTR-3UTR	ENST00000463461	ENST00000591819		TCGA	LD	OV	TCGA-23-1119-01A	VTCN1	chr1	117753446	-	DNM2	chr19	10883155	+
5CDS-5UTR	ENST00000448637	ENST00000490131		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000448637	ENST00000498619		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-intron	ENST00000448637	ENST00000296154		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000312675	ENST00000490131		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000312675	ENST00000498619		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-intron	ENST00000312675	ENST00000296154		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000543006	ENST00000490131		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000543006	ENST00000498619		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
5CDS-intron	ENST00000543006	ENST00000296154		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
intron-5UTR	ENST00000471917	ENST00000490131		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
intron-5UTR	ENST00000471917	ENST00000498619		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
intron-intron	ENST00000471917	ENST00000296154		TCGA	LD	OV	TCGA-23-1120-01A	LPP	chr3	188202492	+	CASR	chr3	121972795	+
In-frame	ENST00000532489	ENST00000600603		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000532489	ENST00000601638		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000532489	ENST00000221557		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000532489	ENST00000598325		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000532489	ENST00000391842		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000532489	ENST00000599732		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000532489	ENST00000601675		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000391851	ENST00000600603		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000391851	ENST00000601638		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000391851	ENST00000221557		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000391851	ENST00000598325		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000391851	ENST00000391842		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000391851	ENST00000599732		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000391851	ENST00000601675		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000454376	ENST00000600603		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000454376	ENST00000601638		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000454376	ENST00000221557		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000454376	ENST00000598325		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000454376	ENST00000391842		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000454376	ENST00000599732		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
5CDS-3UTR	ENST00000454376	ENST00000601675		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3CDS	ENST00000527866	ENST00000600603		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3CDS	ENST00000527866	ENST00000601638		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3CDS	ENST00000527866	ENST00000221557		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3UTR	ENST00000527866	ENST00000598325		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3UTR	ENST00000527866	ENST00000391842		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3UTR	ENST00000527866	ENST00000599732		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
intron-3UTR	ENST00000527866	ENST00000601675		TCGA	LD	OV	TCGA-23-1120-01A	PRMT1	chr19	50183845	+	PTOV1	chr19	50361806	+
In-frame	ENST00000356286	ENST00000354329		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000356286	ENST00000529578		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000356286	ENST00000533112		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000356286	ENST00000531253		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000356286	ENST00000527372		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
Frame-shit	ENST00000353660	ENST00000354329		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000353660	ENST00000529578		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000353660	ENST00000533112		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000353660	ENST00000531253		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000353660	ENST00000527372		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5UTR-3CDS	ENST00000382181	ENST00000354329		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000382181	ENST00000529578		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000382181	ENST00000533112		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000382181	ENST00000531253		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5UTR-5UTR	ENST00000382181	ENST00000527372		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
In-frame	ENST00000475269	ENST00000354329		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000475269	ENST00000529578		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000475269	ENST00000533112		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000475269	ENST00000531253		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000475269	ENST00000527372		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
3UTR-3CDS	ENST00000400245	ENST00000354329		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
3UTR-5UTR	ENST00000400245	ENST00000529578		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
3UTR-5UTR	ENST00000400245	ENST00000533112		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
3UTR-5UTR	ENST00000400245	ENST00000531253		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
3UTR-5UTR	ENST00000400245	ENST00000527372		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
Frame-shit	ENST00000400247	ENST00000354329		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000400247	ENST00000529578		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000400247	ENST00000533112		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000400247	ENST00000531253		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000400247	ENST00000527372		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	MYO18A	chr17	27401932	-
5CDS-5UTR	ENST00000356286	ENST00000408971		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000356286	ENST00000359450		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000353660	ENST00000408971		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000353660	ENST00000359450		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000382181	ENST00000408971		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000382181	ENST00000359450		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000475269	ENST00000408971		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000475269	ENST00000359450		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
3UTR-5UTR	ENST00000400245	ENST00000408971		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
3UTR-5UTR	ENST00000400245	ENST00000359450		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000400247	ENST00000408971		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000400247	ENST00000359450		TCGA	LD	OV	TCGA-23-1120-01A	RBCK1	chr20	389423	+	TIAF1	chr17	27401932	-
Frame-shit	ENST00000464167	ENST00000448637		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000464167	ENST00000312675		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000464167	ENST00000543006		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
5CDS-intron	ENST00000464167	ENST00000471917		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000329092	ENST00000448637		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000329092	ENST00000312675		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000329092	ENST00000543006		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
5CDS-intron	ENST00000329092	ENST00000471917		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000448864	ENST00000448637		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000448864	ENST00000312675		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
Frame-shit	ENST00000448864	ENST00000543006		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
5CDS-intron	ENST00000448864	ENST00000471917		TCGA	LD	OV	TCGA-23-1120-01A	RPL35A	chr3	197681018	+	LPP	chr3	188202380	+
5UTR-3CDS	ENST00000265565	ENST00000296149		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-intron	ENST00000265565	ENST00000446787		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-5UTR	ENST00000265565	ENST00000439305		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-intron	ENST00000265565	ENST00000460502		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-3CDS	ENST00000441517	ENST00000296149		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-intron	ENST00000441517	ENST00000446787		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-5UTR	ENST00000441517	ENST00000439305		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-intron	ENST00000441517	ENST00000460502		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-3CDS	ENST00000545718	ENST00000296149		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-intron	ENST00000545718	ENST00000446787		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-5UTR	ENST00000545718	ENST00000439305		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
5UTR-intron	ENST00000545718	ENST00000460502		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
intron-3CDS	ENST00000465628	ENST00000296149		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
intron-intron	ENST00000465628	ENST00000446787		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
intron-5UTR	ENST00000465628	ENST00000439305		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
intron-intron	ENST00000465628	ENST00000460502		TCGA	LD	OV	TCGA-23-1120-01A	SCAP	chr3	47517289	-	ELP6	chr3	47552716	-
intron-3CDS	ENST00000393042	ENST00000333003		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-5UTR	ENST00000393042	ENST00000545833		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-5UTR	ENST00000393042	ENST00000393101		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-5UTR	ENST00000393042	ENST00000330677		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-3CDS	ENST00000420861	ENST00000333003		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-5UTR	ENST00000420861	ENST00000545833		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-5UTR	ENST00000420861	ENST00000393101		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
intron-5UTR	ENST00000420861	ENST00000330677		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
In-frame	ENST00000342502	ENST00000333003		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
5CDS-5UTR	ENST00000342502	ENST00000545833		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
5CDS-5UTR	ENST00000342502	ENST00000393101		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
5CDS-5UTR	ENST00000342502	ENST00000330677		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
In-frame	ENST00000299157	ENST00000333003		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
5CDS-5UTR	ENST00000299157	ENST00000545833		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
5CDS-5UTR	ENST00000299157	ENST00000393101		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
5CDS-5UTR	ENST00000299157	ENST00000330677		TCGA	LD	OV	TCGA-23-1122-01A	IKBIP	chr12	99028074	-	NR2C1	chr12	95445719	-
In-frame	ENST00000409556	ENST00000493112		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000409556	ENST00000307227		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000409556	ENST00000492795		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000312912	ENST00000493112		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000312912	ENST00000307227		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000312912	ENST00000492795		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000409064	ENST00000493112		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000409064	ENST00000307227		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000409064	ENST00000492795		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000542128	ENST00000493112		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000542128	ENST00000307227		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000542128	ENST00000492795		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
intron-3CDS	ENST00000485171	ENST00000493112		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
intron-3CDS	ENST00000485171	ENST00000307227		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
intron-3CDS	ENST00000485171	ENST00000492795		TCGA	LD	OV	TCGA-23-1122-01A	KDM3A	chr2	86669356	+	SUCLG2	chr3	67660020	-
In-frame	ENST00000367278	ENST00000295640		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
5CDS-intron	ENST00000367278	ENST00000367286		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
5CDS-3UTR	ENST00000367278	ENST00000471105		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-3CDS	ENST00000255432	ENST00000295640		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-intron	ENST00000255432	ENST00000367286		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-3UTR	ENST00000255432	ENST00000471105		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-3CDS	ENST00000439764	ENST00000295640		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-intron	ENST00000439764	ENST00000367286		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-3UTR	ENST00000439764	ENST00000471105		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-3CDS	ENST00000308543	ENST00000295640		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-intron	ENST00000308543	ENST00000367286		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
intron-3UTR	ENST00000308543	ENST00000471105		TCGA	LD	OV	TCGA-23-1122-01A	LGR6	chr1	202163329	+	RNPEP	chr1	201965275	+
5CDS-intron	ENST00000354179	ENST00000231173		TCGA	LD	OV	TCGA-23-1122-01A	NSD1	chr5	176666866	+	PCDHB15	chr5	140625051	+
5CDS-intron	ENST00000439151	ENST00000231173		TCGA	LD	OV	TCGA-23-1122-01A	NSD1	chr5	176666866	+	PCDHB15	chr5	140625051	+
5CDS-intron	ENST00000347982	ENST00000231173		TCGA	LD	OV	TCGA-23-1122-01A	NSD1	chr5	176666866	+	PCDHB15	chr5	140625051	+
5CDS-intron	ENST00000361032	ENST00000231173		TCGA	LD	OV	TCGA-23-1122-01A	NSD1	chr5	176666866	+	PCDHB15	chr5	140625051	+
intron-intron	ENST00000511258	ENST00000231173		TCGA	LD	OV	TCGA-23-1122-01A	NSD1	chr5	176666866	+	PCDHB15	chr5	140625051	+
In-frame	ENST00000367545	ENST00000287380		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367545	ENST00000309336		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367545	ENST00000327098		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367545	ENST00000522420		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367545	ENST00000521676		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
5CDS-3UTR	ENST00000367545	ENST00000378080		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
5CDS-3UTR	ENST00000367545	ENST00000518805		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367526	ENST00000287380		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367526	ENST00000309336		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367526	ENST00000327098		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367526	ENST00000522420		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
In-frame	ENST00000367526	ENST00000521676		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
5CDS-3UTR	ENST00000367526	ENST00000378080		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
5CDS-3UTR	ENST00000367526	ENST00000518805		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3CDS	ENST00000480333	ENST00000287380		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3CDS	ENST00000480333	ENST00000309336		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3CDS	ENST00000480333	ENST00000327098		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3CDS	ENST00000480333	ENST00000522420		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3CDS	ENST00000480333	ENST00000521676		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3UTR	ENST00000480333	ENST00000378080		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
intron-3UTR	ENST00000480333	ENST00000518805		TCGA	LD	OV	TCGA-23-1122-01A	UTRN	chr6	145161968	+	TBC1D31	chr8	124162276	+
5CDS-5UTR	ENST00000252622	ENST00000382159		TCGA	LD	OV	TCGA-23-1123-01A	LSM7	chr19	2328386	-	GNG7	chr19	2520723	-
intron-5UTR	ENST00000589532	ENST00000382159		TCGA	LD	OV	TCGA-23-1123-01A	LSM7	chr19	2328386	-	GNG7	chr19	2520723	-
intron-3CDS	ENST00000277541	ENST00000358161		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000277541	ENST00000372739		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000277541	ENST00000372731		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-intron	ENST00000277541	ENST00000475367		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000491649	ENST00000358161		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000491649	ENST00000372739		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-3CDS	ENST00000491649	ENST00000372731		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
intron-intron	ENST00000491649	ENST00000475367		TCGA	LD	OV	TCGA-23-1123-01A	NOTCH1	chr9	139390682	-	SPTAN1	chr9	131386607	+
Frame-shit	ENST00000331134	ENST00000306749		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
5CDS-intron	ENST00000331134	ENST00000579758		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
Frame-shit	ENST00000374747	ENST00000306749		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
5CDS-intron	ENST00000374747	ENST00000579758		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
Frame-shit	ENST00000539314	ENST00000306749		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
5CDS-intron	ENST00000539314	ENST00000579758		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-3CDS	ENST00000572760	ENST00000306749		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-intron	ENST00000572760	ENST00000579758		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-3CDS	ENST00000573876	ENST00000306749		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-intron	ENST00000573876	ENST00000579758		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-3CDS	ENST00000574344	ENST00000306749		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-intron	ENST00000574344	ENST00000579758		TCGA	LD	OV	TCGA-23-1123-01A	NPLOC4	chr17	79564271	-	FASN	chr17	80042829	-
intron-5UTR	ENST00000497424	ENST00000254963		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
intron-5UTR	ENST00000497424	ENST00000542646		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
5CDS-5UTR	ENST00000316562	ENST00000254963		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
5CDS-5UTR	ENST00000316562	ENST00000542646		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
5CDS-5UTR	ENST00000610179	ENST00000254963		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
5CDS-5UTR	ENST00000610179	ENST00000542646		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
intron-5UTR	ENST00000464452	ENST00000254963		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
intron-5UTR	ENST00000464452	ENST00000542646		TCGA	LD	OV	TCGA-23-1123-01A	PANK2	chr20	3870375	+	HSPA12B	chr20	3719305	+
5UTR-3CDS	ENST00000318596	ENST00000337018		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
5UTR-3CDS	ENST00000318596	ENST00000452918		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
5UTR-3CDS	ENST00000318596	ENST00000601879		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
5UTR-3CDS	ENST00000318596	ENST00000600377		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
5UTR-3CDS	ENST00000318596	ENST00000456085		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
5UTR-intron	ENST00000318596	ENST00000598202		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
intron-3CDS	ENST00000600275	ENST00000337018		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
intron-3CDS	ENST00000600275	ENST00000452918		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
intron-3CDS	ENST00000600275	ENST00000601879		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
intron-3CDS	ENST00000600275	ENST00000600377		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
intron-3CDS	ENST00000600275	ENST00000456085		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
intron-intron	ENST00000600275	ENST00000598202		TCGA	LD	OV	TCGA-23-1123-01A	SLC25A42	chr19	19174924	+	SUGP2	chr19	19119237	-
Frame-shit	ENST00000383836	ENST00000264926		TCGA	LD	OV	TCGA-23-1123-01A	SRGAP3	chr3	9290569	-	RAD18	chr3	8983488	-
5CDS-5UTR	ENST00000383836	ENST00000495087		TCGA	LD	OV	TCGA-23-1123-01A	SRGAP3	chr3	9290569	-	RAD18	chr3	8983488	-
Frame-shit	ENST00000360413	ENST00000264926		TCGA	LD	OV	TCGA-23-1123-01A	SRGAP3	chr3	9290569	-	RAD18	chr3	8983488	-
5CDS-5UTR	ENST00000360413	ENST00000495087		TCGA	LD	OV	TCGA-23-1123-01A	SRGAP3	chr3	9290569	-	RAD18	chr3	8983488	-
intron-3CDS	ENST00000433332	ENST00000264926		TCGA	LD	OV	TCGA-23-1123-01A	SRGAP3	chr3	9290569	-	RAD18	chr3	8983488	-
intron-5UTR	ENST00000433332	ENST00000495087		TCGA	LD	OV	TCGA-23-1123-01A	SRGAP3	chr3	9290569	-	RAD18	chr3	8983488	-
In-frame	ENST00000327087	ENST00000280665		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
In-frame	ENST00000327087	ENST00000397173		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
5CDS-intron	ENST00000327087	ENST00000541700		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
5CDS-intron	ENST00000327087	ENST00000540622		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
In-frame	ENST00000546188	ENST00000280665		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
In-frame	ENST00000546188	ENST00000397173		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
5CDS-intron	ENST00000546188	ENST00000541700		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
5CDS-intron	ENST00000546188	ENST00000540622		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
In-frame	ENST00000356134	ENST00000280665		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
In-frame	ENST00000356134	ENST00000397173		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
5CDS-intron	ENST00000356134	ENST00000541700		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
5CDS-intron	ENST00000356134	ENST00000540622		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000538154	ENST00000280665		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000538154	ENST00000397173		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
intron-intron	ENST00000538154	ENST00000541700		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
intron-intron	ENST00000538154	ENST00000540622		TCGA	LD	OV	TCGA-23-2077-01A	ANO2	chr12	5936935	-	DCP1B	chr12	2077076	-
intron-3CDS	ENST00000346618	ENST00000380773		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
intron-3CDS	ENST00000346618	ENST00000380771		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
intron-3CDS	ENST00000346618	ENST00000380769		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
intron-3CDS	ENST00000346618	ENST00000380764		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
Frame-shit	ENST00000535432	ENST00000380773		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
Frame-shit	ENST00000535432	ENST00000380771		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
Frame-shit	ENST00000535432	ENST00000380769		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
Frame-shit	ENST00000535432	ENST00000380764		TCGA	LD	OV	TCGA-23-2077-01A	E2F3	chr6	20404063	+	WRNIP1	chr6	2779497	+
5UTR-3CDS	ENST00000370982	ENST00000538609		TCGA	LD	OV	TCGA-23-2077-01A	GNG12	chr1	68243141	-	CYP4X1	chr1	47495662	+
5UTR-3CDS	ENST00000370982	ENST00000371901		TCGA	LD	OV	TCGA-23-2077-01A	GNG12	chr1	68243141	-	CYP4X1	chr1	47495662	+
5UTR-intron	ENST00000370982	ENST00000466294		TCGA	LD	OV	TCGA-23-2077-01A	GNG12	chr1	68243141	-	CYP4X1	chr1	47495662	+
intron-3CDS	ENST00000494936	ENST00000538609		TCGA	LD	OV	TCGA-23-2077-01A	GNG12	chr1	68243141	-	CYP4X1	chr1	47495662	+
intron-3CDS	ENST00000494936	ENST00000371901		TCGA	LD	OV	TCGA-23-2077-01A	GNG12	chr1	68243141	-	CYP4X1	chr1	47495662	+
intron-intron	ENST00000494936	ENST00000466294		TCGA	LD	OV	TCGA-23-2077-01A	GNG12	chr1	68243141	-	CYP4X1	chr1	47495662	+
5CDS-5UTR	ENST00000291442	ENST00000247706		TCGA	LD	OV	TCGA-23-2077-01A	NR2F6	chr19	17355752	-	ABHD8	chr19	17412433	-
In-frame	ENST00000315872	ENST00000454136		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000374995		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000540315		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000374993		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-5UTR	ENST00000315872	ENST00000544175		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-5UTR	ENST00000315872	ENST00000414363		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000429232		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000546948		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000549631		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000549560		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000550327		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000547901		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000548922		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000549943		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000552479		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000546419		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551095		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000553032		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000548832		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000546521		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000549852		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551471		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000549081		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000552394		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551868		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000547502		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000550698		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551101		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000550531		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000552523		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000548066		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551409		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551686		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000552970		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000548717		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000553068		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551561		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000548835		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000548253		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000551669		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000315872	ENST00000547429		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-3CDS	ENST00000462366	ENST00000454136		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000374995		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000540315		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000374993		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-5UTR	ENST00000462366	ENST00000544175		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-5UTR	ENST00000462366	ENST00000414363		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000429232		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000546948		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000549631		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000549560		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000550327		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000547901		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000548922		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000549943		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000552479		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000546419		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551095		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000553032		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000548832		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000546521		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000549852		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551471		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000549081		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000552394		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551868		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000547502		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000550698		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551101		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000550531		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000552523		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000548066		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551409		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551686		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000552970		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000548717		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000553068		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551561		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000548835		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000548253		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000551669		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
intron-intron	ENST00000462366	ENST00000547429		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
Frame-shit	ENST00000401753	ENST00000454136		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000374995		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000540315		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000374993		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-5UTR	ENST00000401753	ENST00000544175		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-5UTR	ENST00000401753	ENST00000414363		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000429232		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000546948		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000549631		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000549560		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000550327		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000547901		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000548922		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000549943		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000552479		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000546419		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551095		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000553032		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000548832		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000546521		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000549852		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551471		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000549081		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000552394		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551868		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000547502		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000550698		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551101		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000550531		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000552523		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000548066		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551409		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551686		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000552970		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000548717		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000553068		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551561		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000548835		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000548253		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000551669		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5CDS-intron	ENST00000401753	ENST00000547429		TCGA	LD	OV	TCGA-23-2077-01A	ROCK2	chr2	11351807	-	BTNL2	chr6	32369582	-
5UTR-intron	ENST00000378308	ENST00000399959		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-3UTR	ENST00000378308	ENST00000478993		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000378308	ENST00000457138		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000378308	ENST00000441189		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000378308	ENST00000542215		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000324545	ENST00000399959		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-3UTR	ENST00000324545	ENST00000478993		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000324545	ENST00000457138		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000324545	ENST00000441189		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5UTR-intron	ENST00000324545	ENST00000542215		TCGA	LD	OV	TCGA-23-2077-01A	USP9X	chrX	40945362	+	DDX3X	chrX	41223527	+
5CDS-5UTR	ENST00000348943	ENST00000159111		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000348943	ENST00000381759		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000348943	ENST00000536461		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000348943	ENST00000592175		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000325495	ENST00000159111		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-5UTR	ENST00000325495	ENST00000381759		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000325495	ENST00000536461		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
5CDS-intron	ENST00000325495	ENST00000592175		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000602219	ENST00000159111		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
intron-5UTR	ENST00000602219	ENST00000381759		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000602219	ENST00000536461		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
intron-intron	ENST00000602219	ENST00000592175		TCGA	LD	OV	TCGA-23-2078-01A	HNRNPM	chr19	8539128	+	KDM4B	chr19	5016268	+
In-frame	ENST00000445593	ENST00000220763		TCGA	LD	OV	TCGA-23-2078-01A	LAPTM4B	chr8	98788336	+	CPQ	chr8	98155248	+
5CDS-intron	ENST00000445593	ENST00000529551		TCGA	LD	OV	TCGA-23-2078-01A	LAPTM4B	chr8	98788336	+	CPQ	chr8	98155248	+
In-frame	ENST00000521545	ENST00000220763		TCGA	LD	OV	TCGA-23-2078-01A	LAPTM4B	chr8	98788336	+	CPQ	chr8	98155248	+
5CDS-intron	ENST00000521545	ENST00000529551		TCGA	LD	OV	TCGA-23-2078-01A	LAPTM4B	chr8	98788336	+	CPQ	chr8	98155248	+
Frame-shit	ENST00000400485	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	MORC3	chr21	37711219	+	IL10RB	chr21	34655399	+
3UTR-3CDS	ENST00000487909	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	MORC3	chr21	37711219	+	IL10RB	chr21	34655399	+
intron-3CDS	ENST00000355666	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	TTC3	chr21	38445773	+	IL10RB	chr21	34655399	+
intron-3CDS	ENST00000399017	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	TTC3	chr21	38445773	+	IL10RB	chr21	34655399	+
intron-3CDS	ENST00000354749	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	TTC3	chr21	38445773	+	IL10RB	chr21	34655399	+
intron-3CDS	ENST00000479930	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	TTC3	chr21	38445773	+	IL10RB	chr21	34655399	+
intron-3CDS	ENST00000540756	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	TTC3	chr21	38445773	+	IL10RB	chr21	34655399	+
intron-3CDS	ENST00000399010	ENST00000290200		TCGA	LD	OV	TCGA-23-2078-01A	TTC3	chr21	38445773	+	IL10RB	chr21	34655399	+
5UTR-5UTR	ENST00000430629	ENST00000374005		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000399173		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000545953		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000430629	ENST00000374004		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000468038		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000374005		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000399173		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000545953		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000536657	ENST00000374004		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000468038		TCGA	LD	OV	TCGA-23-2078-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
Frame-shit	ENST00000356708	ENST00000344293		TCGA	LD	OV	TCGA-23-2081-01A	ATP5C1	chr10	7830226	+	TAF3	chr10	8005883	+
3UTR-3CDS	ENST00000493053	ENST00000344293		TCGA	LD	OV	TCGA-23-2081-01A	ATP5C1	chr10	7830226	+	TAF3	chr10	8005883	+
5UTR-3CDS	ENST00000541227	ENST00000344293		TCGA	LD	OV	TCGA-23-2081-01A	ATP5C1	chr10	7830226	+	TAF3	chr10	8005883	+
Frame-shit	ENST00000335698	ENST00000344293		TCGA	LD	OV	TCGA-23-2081-01A	ATP5C1	chr10	7830226	+	TAF3	chr10	8005883	+
5CDS-intron	ENST00000561924	ENST00000405402		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000561924	ENST00000253458		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000561924	ENST00000393243		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000561924	ENST00000471070		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000290858	ENST00000405402		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000290858	ENST00000253458		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000290858	ENST00000393243		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000290858	ENST00000471070		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000412916	ENST00000405402		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000412916	ENST00000253458		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000412916	ENST00000393243		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
5CDS-intron	ENST00000412916	ENST00000471070		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
intron-intron	ENST00000568858	ENST00000405402		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
intron-intron	ENST00000568858	ENST00000253458		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
intron-intron	ENST00000568858	ENST00000393243		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
intron-intron	ENST00000568858	ENST00000471070		TCGA	LD	OV	TCGA-23-2084-01A	CBFB	chr16	67116211	+	GSE1	chr16	85205195	+
intron-3CDS	ENST00000529225	ENST00000392859		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-3CDS	ENST00000529225	ENST00000359415		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-intron	ENST00000529225	ENST00000534182		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-intron	ENST00000529225	ENST00000264028		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
In-frame	ENST00000440460	ENST00000392859		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
In-frame	ENST00000440460	ENST00000359415		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
5CDS-intron	ENST00000440460	ENST00000534182		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
5CDS-intron	ENST00000440460	ENST00000264028		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
3UTR-3CDS	ENST00000389821	ENST00000392859		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
3UTR-3CDS	ENST00000389821	ENST00000359415		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
3UTR-intron	ENST00000389821	ENST00000534182		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
3UTR-intron	ENST00000389821	ENST00000264028		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
In-frame	ENST00000531396	ENST00000392859		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
In-frame	ENST00000531396	ENST00000359415		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
5CDS-intron	ENST00000531396	ENST00000534182		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
5CDS-intron	ENST00000531396	ENST00000264028		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-3CDS	ENST00000315253	ENST00000392859		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-3CDS	ENST00000315253	ENST00000359415		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-intron	ENST00000315253	ENST00000534182		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-intron	ENST00000315253	ENST00000264028		TCGA	LD	OV	TCGA-23-2084-01A	DIXDC1	chr11	111808283	+	ARCN1	chr11	118463424	+
intron-3CDS	ENST00000358161	ENST00000538474		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000358161	ENST00000361134		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000372739	ENST00000538474		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000372739	ENST00000361134		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000372731	ENST00000538474		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000372731	ENST00000361134		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000475367	ENST00000538474		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
intron-3CDS	ENST00000475367	ENST00000361134		TCGA	LD	OV	TCGA-23-2084-01A	SPTAN1	chr9	131389323	+	SLC34A3	chr9	140130798	+
In-frame	ENST00000005340	ENST00000302422		TCGA	LD	OV	TCGA-24-0966-01A	DVL2	chr17	7129740	-	TMEM256	chr17	7307008	-
In-frame	ENST00000575458	ENST00000302422		TCGA	LD	OV	TCGA-24-0966-01A	DVL2	chr17	7129740	-	TMEM256	chr17	7307008	-
intron-3CDS	ENST00000574642	ENST00000302422		TCGA	LD	OV	TCGA-24-0966-01A	DVL2	chr17	7129740	-	TMEM256	chr17	7307008	-
5UTR-3CDS	ENST00000557401	ENST00000303575		TCGA	LD	OV	TCGA-24-0968-01A	AREL1	chr14	75158744	-	TMED10	chr14	75602589	-
5UTR-5UTR	ENST00000557401	ENST00000557670		TCGA	LD	OV	TCGA-24-0968-01A	AREL1	chr14	75158744	-	TMED10	chr14	75602589	-
5UTR-3CDS	ENST00000356357	ENST00000303575		TCGA	LD	OV	TCGA-24-0968-01A	AREL1	chr14	75158744	-	TMED10	chr14	75602589	-
5UTR-5UTR	ENST00000356357	ENST00000557670		TCGA	LD	OV	TCGA-24-0968-01A	AREL1	chr14	75158744	-	TMED10	chr14	75602589	-
Frame-shit	ENST00000271732	ENST00000368814		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
5CDS-5UTR	ENST00000271732	ENST00000477437		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
5CDS-intron	ENST00000271732	ENST00000489410		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
Frame-shit	ENST00000540514	ENST00000368814		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
5CDS-5UTR	ENST00000540514	ENST00000477437		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
5CDS-intron	ENST00000540514	ENST00000489410		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
intron-3CDS	ENST00000479757	ENST00000368814		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
intron-5UTR	ENST00000479757	ENST00000477437		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
intron-intron	ENST00000479757	ENST00000489410		TCGA	LD	OV	TCGA-24-0968-01A	GOLPH3L	chr1	150634290	-	THEM4	chr1	151861849	-
Frame-shit	ENST00000368321	ENST00000295688		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368321	ENST00000368259		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368321	ENST00000368261		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368321	ENST00000472765		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
5CDS-intron	ENST00000368321	ENST00000368256		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368320	ENST00000295688		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368320	ENST00000368259		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368320	ENST00000368261		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000368320	ENST00000472765		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
5CDS-intron	ENST00000368320	ENST00000368256		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368319	ENST00000295688		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368319	ENST00000368259		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368319	ENST00000368261		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000368319	ENST00000472765		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-intron	ENST00000368319	ENST00000368256		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000482337	ENST00000295688		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000482337	ENST00000368259		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000482337	ENST00000368261		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-3CDS	ENST00000482337	ENST00000472765		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
intron-intron	ENST00000482337	ENST00000368256		TCGA	LD	OV	TCGA-24-0968-01A	KIAA0907	chr1	155886416	-	CCT3	chr1	156288808	-
Frame-shit	ENST00000438796	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
Frame-shit	ENST00000414675	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
Frame-shit	ENST00000441090	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
Frame-shit	ENST00000334859	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
Frame-shit	ENST00000425562	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
intron-3CDS	ENST00000493726	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
intron-3CDS	ENST00000536618	ENST00000308027		TCGA	LD	OV	TCGA-24-0968-01A	LRCH3	chr3	197518411	+	SLC16A13	chr17	6943082	+
5CDS-3UTR	ENST00000408978	ENST00000371497		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000408978	ENST00000603338		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000408978	ENST00000329613		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000409044	ENST00000371497		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000409044	ENST00000603338		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000409044	ENST00000329613		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000334231	ENST00000371497		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000334231	ENST00000603338		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000334231	ENST00000329613		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000602629	ENST00000371497		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000602629	ENST00000603338		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000602629	ENST00000329613		TCGA	LD	OV	TCGA-24-0968-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000331134	ENST00000560606		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
Frame-shit	ENST00000331134	ENST00000300069		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
Frame-shit	ENST00000374747	ENST00000560606		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
Frame-shit	ENST00000374747	ENST00000300069		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
5UTR-3CDS	ENST00000539314	ENST00000560606		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
5UTR-3CDS	ENST00000539314	ENST00000300069		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
intron-3CDS	ENST00000572760	ENST00000560606		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
intron-3CDS	ENST00000572760	ENST00000300069		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
intron-3CDS	ENST00000573876	ENST00000560606		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
intron-3CDS	ENST00000573876	ENST00000300069		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
intron-3CDS	ENST00000574344	ENST00000560606		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
intron-3CDS	ENST00000574344	ENST00000300069		TCGA	LD	OV	TCGA-24-0968-01A	NPLOC4	chr17	79596751	-	RBPMS2	chr15	65033441	-
Frame-shit	ENST00000242592	ENST00000229328		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
Frame-shit	ENST00000242592	ENST00000541640		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
5CDS-5UTR	ENST00000242592	ENST00000540121		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
5CDS-intron	ENST00000242592	ENST00000537057		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
Frame-shit	ENST00000411593	ENST00000229328		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
Frame-shit	ENST00000411593	ENST00000541640		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
5CDS-5UTR	ENST00000411593	ENST00000540121		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
5CDS-intron	ENST00000411593	ENST00000537057		TCGA	LD	OV	TCGA-24-0970-01B	ACADS	chr12	121164992	+	PRKAB1	chr12	120111769	+
intron-3CDS	ENST00000395465	ENST00000315757		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
intron-3CDS	ENST00000395465	ENST00000423218		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
intron-intron	ENST00000395465	ENST00000562826		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
Frame-shit	ENST00000448060	ENST00000315757		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
Frame-shit	ENST00000448060	ENST00000423218		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
5CDS-intron	ENST00000448060	ENST00000562826		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
In-frame	ENST00000540479	ENST00000315757		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
In-frame	ENST00000540479	ENST00000423218		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
5CDS-intron	ENST00000540479	ENST00000562826		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
Frame-shit	ENST00000467889	ENST00000315757		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
Frame-shit	ENST00000467889	ENST00000423218		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
5CDS-intron	ENST00000467889	ENST00000562826		TCGA	LD	OV	TCGA-24-0970-01B	CALML4	chr15	68489778	-	ITGA11	chr15	68613841	-
Frame-shit	ENST00000167462	ENST00000335464		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000167462	ENST00000417024		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000167462	ENST00000582773		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000167462	ENST00000582330		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000167462	ENST00000584171		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-3CDS	ENST00000375227	ENST00000335464		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000375227	ENST00000417024		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000375227	ENST00000582773		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000375227	ENST00000582330		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000375227	ENST00000584171		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
Frame-shit	ENST00000392550	ENST00000335464		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000392550	ENST00000417024		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000392550	ENST00000582773		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000392550	ENST00000582330		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000392550	ENST00000584171		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-3CDS	ENST00000578363	ENST00000335464		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000578363	ENST00000417024		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000578363	ENST00000582773		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000578363	ENST00000582330		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000578363	ENST00000584171		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
Frame-shit	ENST00000577200	ENST00000335464		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000577200	ENST00000417024		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000577200	ENST00000582773		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000577200	ENST00000582330		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000577200	ENST00000584171		TCGA	LD	OV	TCGA-24-0970-01B	LLGL2	chr17	73568145	+	TMEM104	chr17	72832066	+
5CDS-5UTR	ENST00000372806	ENST00000372891		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000372894		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000372892		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000372889		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000372887		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000372882		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-3UTR	ENST00000372806	ENST00000477390		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000372886		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372806	ENST00000349959		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372891		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372894		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372892		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372889		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372887		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372882		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-3UTR	ENST00000396731	ENST00000477390		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000372886		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000396731	ENST00000349959		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372891		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372894		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372892		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372889		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372887		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372882		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-3UTR	ENST00000372801	ENST00000477390		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000372886		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000372801	ENST00000349959		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372891		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372894		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372892		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372889		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372887		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372882		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-3UTR	ENST00000499879	ENST00000477390		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000372886		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000499879	ENST00000349959		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372891		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372894		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372892		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372889		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372887		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372882		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-3UTR	ENST00000487587	ENST00000477390		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000372886		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
intron-5UTR	ENST00000487587	ENST00000349959		TCGA	LD	OV	TCGA-24-0970-01B	STK4	chr20	43629994	+	PKIG	chr20	43243175	+
5CDS-intron	ENST00000263846	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000263846	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000263846	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000263846	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000540677	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000540677	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000540677	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000540677	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000539008	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000539008	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000539008	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000539008	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000542836	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000542836	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000542836	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000542836	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000542670	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000542670	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000542670	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000542670	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000535826	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000535826	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000535826	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000535826	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
intron-intron	ENST00000540831	ENST00000530124		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
intron-intron	ENST00000540831	ENST00000257247		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
intron-5UTR	ENST00000540831	ENST00000525875		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
intron-intron	ENST00000540831	ENST00000378024		TCGA	LD	OV	TCGA-24-0970-01B	SYT7	chr11	61348262	-	AHNAK	chr11	62259303	-
In-frame	ENST00000317204	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000317204	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000317204	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
5CDS-intron	ENST00000317204	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000527886	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000527886	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000527886	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-intron	ENST00000527886	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000525159	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000525159	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000525159	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
5CDS-intron	ENST00000525159	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000263646	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000263646	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000263646	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-intron	ENST00000263646	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000542915	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000542915	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000542915	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
5CDS-intron	ENST00000542915	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000527938	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000527938	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
In-frame	ENST00000527938	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
5CDS-intron	ENST00000527938	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000528719	ENST00000534328		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000528719	ENST00000332231		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-3CDS	ENST00000528719	ENST00000448903		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
intron-intron	ENST00000528719	ENST00000525891		TCGA	LD	OV	TCGA-24-0970-01B	TOLLIP	chr11	1330696	-	AP2A2	chr11	972062	+
5CDS-intron	ENST00000360943	ENST00000525037		TCGA	LD	OV	TCGA-24-0970-01B	UBE2Z	chr17	46993549	+	NPEPPS	chr17	45673719	+
5CDS-intron	ENST00000360943	ENST00000530173		TCGA	LD	OV	TCGA-24-0970-01B	UBE2Z	chr17	46993549	+	NPEPPS	chr17	45673719	+
5CDS-intron	ENST00000360943	ENST00000322157		TCGA	LD	OV	TCGA-24-0970-01B	UBE2Z	chr17	46993549	+	NPEPPS	chr17	45673719	+
5CDS-intron	ENST00000360943	ENST00000544660		TCGA	LD	OV	TCGA-24-0970-01B	UBE2Z	chr17	46993549	+	NPEPPS	chr17	45673719	+
5UTR-3CDS	ENST00000378330	ENST00000334956		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000378330	ENST00000539723		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000378330	ENST00000550549		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000378330	ENST00000538608		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000378330	ENST00000526746		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000301030	ENST00000334956		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000301030	ENST00000539723		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000301030	ENST00000550549		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000301030	ENST00000538608		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000301030	ENST00000526746		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000563291	ENST00000334956		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000563291	ENST00000539723		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000563291	ENST00000550549		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-5UTR	ENST00000563291	ENST00000538608		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-5UTR	ENST00000563291	ENST00000526746		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000567736	ENST00000334956		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000567736	ENST00000539723		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-3CDS	ENST00000567736	ENST00000550549		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-5UTR	ENST00000567736	ENST00000538608		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
intron-5UTR	ENST00000567736	ENST00000526746		TCGA	LD	OV	TCGA-24-0982-01A	ANKRD11	chr16	89484692	-	PARVA	chr11	12495292	+
In-frame	ENST00000448504	ENST00000262325		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000448504	ENST00000592545		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000448504	ENST00000538556		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000448504	ENST00000312678		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000448504	ENST00000589344		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000448504	ENST00000537622		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
5CDS-3UTR	ENST00000448504	ENST00000545922		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000452479	ENST00000262325		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000452479	ENST00000592545		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000452479	ENST00000538556		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000452479	ENST00000312678		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000452479	ENST00000589344		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
In-frame	ENST00000452479	ENST00000537622		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
5CDS-3UTR	ENST00000452479	ENST00000545922		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3CDS	ENST00000582154	ENST00000262325		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3CDS	ENST00000582154	ENST00000592545		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3CDS	ENST00000582154	ENST00000538556		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3CDS	ENST00000582154	ENST00000312678		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3CDS	ENST00000582154	ENST00000589344		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3CDS	ENST00000582154	ENST00000537622		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
3UTR-3UTR	ENST00000582154	ENST00000545922		TCGA	LD	OV	TCGA-24-1103-01A	ARSG	chr17	66366665	+	AP2B1	chr17	34044214	+
intron-3CDS	ENST00000438284	ENST00000254488		TCGA	LD	OV	TCGA-24-1103-01A	HRH1	chr3	11196240	+	SLC6A11	chr3	10953775	+
intron-intron	ENST00000438284	ENST00000454147		TCGA	LD	OV	TCGA-24-1103-01A	HRH1	chr3	11196240	+	SLC6A11	chr3	10953775	+
5UTR-3CDS	ENST00000431010	ENST00000254488		TCGA	LD	OV	TCGA-24-1103-01A	HRH1	chr3	11196240	+	SLC6A11	chr3	10953775	+
5UTR-intron	ENST00000431010	ENST00000454147		TCGA	LD	OV	TCGA-24-1103-01A	HRH1	chr3	11196240	+	SLC6A11	chr3	10953775	+
intron-3CDS	ENST00000397056	ENST00000254488		TCGA	LD	OV	TCGA-24-1103-01A	HRH1	chr3	11196240	+	SLC6A11	chr3	10953775	+
intron-intron	ENST00000397056	ENST00000454147		TCGA	LD	OV	TCGA-24-1103-01A	HRH1	chr3	11196240	+	SLC6A11	chr3	10953775	+
In-frame	ENST00000373297	ENST00000352203		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
In-frame	ENST00000373297	ENST00000601498		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
In-frame	ENST00000373297	ENST00000599990		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000373297	ENST00000593442		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000373297	ENST00000263270		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000373297	ENST00000597020		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000373297	ENST00000601649		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
In-frame	ENST00000314607	ENST00000352203		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
In-frame	ENST00000314607	ENST00000601498		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
In-frame	ENST00000314607	ENST00000599990		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000314607	ENST00000593442		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000314607	ENST00000263270		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000314607	ENST00000597020		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
5CDS-intron	ENST00000314607	ENST00000601649		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-3CDS	ENST00000482131	ENST00000352203		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-3CDS	ENST00000482131	ENST00000601498		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-3CDS	ENST00000482131	ENST00000599990		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-intron	ENST00000482131	ENST00000593442		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-intron	ENST00000482131	ENST00000263270		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-intron	ENST00000482131	ENST00000597020		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-intron	ENST00000482131	ENST00000601649		TCGA	LD	OV	TCGA-24-1103-01A	ZMYM4	chr1	35865177	+	AP2S1	chr19	47349399	-
intron-3CDS	ENST00000273077	ENST00000315717		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000273077	ENST00000295685		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-intron	ENST00000273077	ENST00000477992		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000472650	ENST00000315717		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000472650	ENST00000295685		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-intron	ENST00000472650	ENST00000477992		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
Frame-shit	ENST00000248451	ENST00000315717		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
Frame-shit	ENST00000248451	ENST00000295685		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
5CDS-intron	ENST00000248451	ENST00000477992		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000258362	ENST00000315717		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000258362	ENST00000295685		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-intron	ENST00000258362	ENST00000477992		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000436005	ENST00000315717		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-3CDS	ENST00000436005	ENST00000295685		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
intron-intron	ENST00000436005	ENST00000477992		TCGA	LD	OV	TCGA-24-1104-01A	PNKD	chr2	219137404	+	ARPC2	chr2	219093460	+
5UTR-3CDS	ENST00000524325	ENST00000301263		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
5UTR-5UTR	ENST00000524325	ENST00000518434		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
5UTR-3CDS	ENST00000307180	ENST00000301263		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
5UTR-5UTR	ENST00000307180	ENST00000518434		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
intron-3CDS	ENST00000520166	ENST00000301263		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
intron-5UTR	ENST00000520166	ENST00000518434		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
5UTR-3CDS	ENST00000519651	ENST00000301263		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
5UTR-5UTR	ENST00000519651	ENST00000518434		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
intron-3CDS	ENST00000518928	ENST00000301263		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
intron-5UTR	ENST00000518928	ENST00000518434		TCGA	LD	OV	TCGA-24-1105-01A	TSNARE1	chr8	143484465	-	LY6D	chr8	143867103	-
Frame-shit	ENST00000447716	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000447716	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000395243	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000395243	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000453384	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000453384	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000301043	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000301043	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
In-frame	ENST00000450529	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
In-frame	ENST00000450529	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000415040	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000415040	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000395242	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000395242	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000395245	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000395245	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
In-frame	ENST00000436730	ENST00000225388		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
In-frame	ENST00000436730	ENST00000579665		TCGA	LD	OV	TCGA-24-1416-01A	RAB34	chr17	27044231	-	NUFIP2	chr17	27594548	-
5CDS-5UTR	ENST00000283233	ENST00000418842		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5CDS-5UTR	ENST00000283233	ENST00000375497		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
intron-5UTR	ENST00000409187	ENST00000418842		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
intron-5UTR	ENST00000409187	ENST00000375497		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5UTR-5UTR	ENST00000536771	ENST00000418842		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5UTR-5UTR	ENST00000536771	ENST00000375497		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5CDS-5UTR	ENST00000409889	ENST00000418842		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5CDS-5UTR	ENST00000409889	ENST00000375497		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5UTR-5UTR	ENST00000491563	ENST00000418842		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
5UTR-5UTR	ENST00000491563	ENST00000375497		TCGA	LD	OV	TCGA-24-1417-01A	CCDC148	chr2	159312927	-	GCG	chr2	163005697	-
In-frame	ENST00000335420	ENST00000354725		TCGA	LD	OV	TCGA-24-1417-01A	KLHDC10	chr7	129769416	+	SND1	chr7	127447538	+
5CDS-intron	ENST00000335420	ENST00000467238		TCGA	LD	OV	TCGA-24-1417-01A	KLHDC10	chr7	129769416	+	SND1	chr7	127447538	+
intron-3CDS	ENST00000495724	ENST00000354725		TCGA	LD	OV	TCGA-24-1417-01A	KLHDC10	chr7	129769416	+	SND1	chr7	127447538	+
intron-intron	ENST00000495724	ENST00000467238		TCGA	LD	OV	TCGA-24-1417-01A	KLHDC10	chr7	129769416	+	SND1	chr7	127447538	+
In-frame	ENST00000392328	ENST00000441310		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000392328	ENST00000418224		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000392328	ENST00000409823		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000392328	ENST00000421722		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000392328	ENST00000447232		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000392328	ENST00000432292		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000392328	ENST00000409985		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000392328	ENST00000374826		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000281416	ENST00000441310		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000281416	ENST00000418224		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000281416	ENST00000409823		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000281416	ENST00000421722		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000281416	ENST00000447232		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000281416	ENST00000432292		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000281416	ENST00000409985		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000281416	ENST00000374826		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000535751	ENST00000441310		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000535751	ENST00000418224		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
In-frame	ENST00000535751	ENST00000409823		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000535751	ENST00000421722		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000535751	ENST00000447232		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000535751	ENST00000432292		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000535751	ENST00000409985		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000535751	ENST00000374826		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
Frame-shit	ENST00000489793	ENST00000441310		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
Frame-shit	ENST00000489793	ENST00000418224		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
Frame-shit	ENST00000489793	ENST00000409823		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000489793	ENST00000421722		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000489793	ENST00000447232		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000489793	ENST00000432292		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000489793	ENST00000409985		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000489793	ENST00000374826		TCGA	LD	OV	TCGA-24-1417-01A	MFSD6	chr2	191334581	+	PMS1	chr2	190738222	+
Frame-shit	ENST00000380542	ENST00000003084		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
Frame-shit	ENST00000380542	ENST00000454343		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
5CDS-intron	ENST00000380542	ENST00000608965		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
5UTR-3CDS	ENST00000469089	ENST00000003084		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
5UTR-3CDS	ENST00000469089	ENST00000454343		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
5UTR-intron	ENST00000469089	ENST00000608965		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
In-frame	ENST00000526115	ENST00000003084		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
In-frame	ENST00000526115	ENST00000454343		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
5CDS-intron	ENST00000526115	ENST00000608965		TCGA	LD	OV	TCGA-24-1417-01A	NAP1L4	chr11	2972489	-	CFTR	chr7	117227793	+
5CDS-intron	ENST00000383836	ENST00000352432		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000383836	ENST00000343816		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000383836	ENST00000360273		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000383836	ENST00000383800		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-5UTR	ENST00000383836	ENST00000397077		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000383836	ENST00000467702		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000360413	ENST00000352432		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000360413	ENST00000343816		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000360413	ENST00000360273		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000360413	ENST00000383800		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-5UTR	ENST00000360413	ENST00000397077		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
5CDS-intron	ENST00000360413	ENST00000467702		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
intron-intron	ENST00000433332	ENST00000352432		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
intron-intron	ENST00000433332	ENST00000343816		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
intron-intron	ENST00000433332	ENST00000360273		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
intron-intron	ENST00000433332	ENST00000383800		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
intron-5UTR	ENST00000433332	ENST00000397077		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
intron-intron	ENST00000433332	ENST00000467702		TCGA	LD	OV	TCGA-24-1417-01A	SRGAP3	chr3	9290569	-	ATP2B2	chr3	10575817	-
Frame-shit	ENST00000265293	ENST00000231572		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
Frame-shit	ENST00000265293	ENST00000538719		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
5CDS-3UTR	ENST00000265293	ENST00000520421		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
Frame-shit	ENST00000521089	ENST00000231572		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
Frame-shit	ENST00000521089	ENST00000538719		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
5CDS-3UTR	ENST00000521089	ENST00000520421		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
intron-3CDS	ENST00000522140	ENST00000231572		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
intron-3CDS	ENST00000522140	ENST00000538719		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
intron-3UTR	ENST00000522140	ENST00000520421		TCGA	LD	OV	TCGA-24-1418-01A	WWC1	chr5	167719276	+	RARS	chr5	167927596	+
In-frame	ENST00000290649	ENST00000568104		TCGA	LD	OV	TCGA-24-1423-01A	AMFR	chr16	56435645	-	BBS2	chr16	56518779	-
Frame-shit	ENST00000290649	ENST00000245157		TCGA	LD	OV	TCGA-24-1423-01A	AMFR	chr16	56435645	-	BBS2	chr16	56518779	-
5CDS-intron	ENST00000290649	ENST00000561951		TCGA	LD	OV	TCGA-24-1423-01A	AMFR	chr16	56435645	-	BBS2	chr16	56518779	-
intron-3CDS	ENST00000564283	ENST00000568104		TCGA	LD	OV	TCGA-24-1423-01A	AMFR	chr16	56435645	-	BBS2	chr16	56518779	-
intron-3CDS	ENST00000564283	ENST00000245157		TCGA	LD	OV	TCGA-24-1423-01A	AMFR	chr16	56435645	-	BBS2	chr16	56518779	-
intron-intron	ENST00000564283	ENST00000561951		TCGA	LD	OV	TCGA-24-1423-01A	AMFR	chr16	56435645	-	BBS2	chr16	56518779	-
Frame-shit	ENST00000401998	ENST00000373290		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
5CDS-intron	ENST00000401998	ENST00000459981		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
Frame-shit	ENST00000361114	ENST00000373290		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
5CDS-intron	ENST00000361114	ENST00000459981		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
Frame-shit	ENST00000398761	ENST00000373290		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
5CDS-intron	ENST00000398761	ENST00000459981		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
In-frame	ENST00000418483	ENST00000373290		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
5CDS-intron	ENST00000418483	ENST00000459981		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
In-frame	ENST00000398763	ENST00000373290		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
5CDS-intron	ENST00000398763	ENST00000459981		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
intron-3CDS	ENST00000604025	ENST00000373290		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
intron-intron	ENST00000604025	ENST00000459981		TCGA	LD	OV	TCGA-24-1423-01A	MICU1	chr10	74234858	-	TSPAN15	chr10	71243447	+
5CDS-5UTR	ENST00000379370	ENST00000372969		TCGA	LD	OV	TCGA-24-1424-01A	AGRN	chr1	970704	+	NDUFS5	chr1	39494395	+
5CDS-5UTR	ENST00000379370	ENST00000372967		TCGA	LD	OV	TCGA-24-1424-01A	AGRN	chr1	970704	+	NDUFS5	chr1	39494395	+
3UTR-5UTR	ENST00000477585	ENST00000372969		TCGA	LD	OV	TCGA-24-1424-01A	AGRN	chr1	970704	+	NDUFS5	chr1	39494395	+
3UTR-5UTR	ENST00000477585	ENST00000372967		TCGA	LD	OV	TCGA-24-1424-01A	AGRN	chr1	970704	+	NDUFS5	chr1	39494395	+
5CDS-5UTR	ENST00000389840	ENST00000252575		TCGA	LD	OV	TCGA-24-1424-01A	DNAH17	chr17	76503360	-	NCAN	chr19	19327756	+
5CDS-intron	ENST00000389840	ENST00000538881		TCGA	LD	OV	TCGA-24-1424-01A	DNAH17	chr17	76503360	-	NCAN	chr19	19327756	+
5CDS-5UTR	ENST00000585328	ENST00000252575		TCGA	LD	OV	TCGA-24-1424-01A	DNAH17	chr17	76503360	-	NCAN	chr19	19327756	+
5CDS-intron	ENST00000585328	ENST00000538881		TCGA	LD	OV	TCGA-24-1424-01A	DNAH17	chr17	76503360	-	NCAN	chr19	19327756	+
intron-5UTR	ENST00000586052	ENST00000252575		TCGA	LD	OV	TCGA-24-1424-01A	DNAH17	chr17	76503360	-	NCAN	chr19	19327756	+
intron-intron	ENST00000586052	ENST00000538881		TCGA	LD	OV	TCGA-24-1424-01A	DNAH17	chr17	76503360	-	NCAN	chr19	19327756	+
5CDS-5UTR	ENST00000358691	ENST00000453134		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000358691	ENST00000583458		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000358691	ENST00000415831		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000358691	ENST00000582043		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000358691	ENST00000580155		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000358691	ENST00000584778		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000358691	ENST00000578887		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000580168	ENST00000453134		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000580168	ENST00000583458		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000580168	ENST00000415831		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000580168	ENST00000582043		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000580168	ENST00000580155		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-5UTR	ENST00000580168	ENST00000584778		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5CDS-intron	ENST00000580168	ENST00000578887		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-5UTR	ENST00000580662	ENST00000453134		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-5UTR	ENST00000580662	ENST00000583458		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-intron	ENST00000580662	ENST00000415831		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-intron	ENST00000580662	ENST00000582043		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-5UTR	ENST00000580662	ENST00000580155		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-5UTR	ENST00000580662	ENST00000584778		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
5UTR-intron	ENST00000580662	ENST00000578887		TCGA	LD	OV	TCGA-24-1424-01A	HELZ	chr17	65212015	-	RBFOX3	chr17	77478680	-
Frame-shit	ENST00000305997	ENST00000264335		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
In-frame	ENST00000305997	ENST00000571732		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
In-frame	ENST00000305997	ENST00000573026		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000305997	ENST00000575977		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
5CDS-intron	ENST00000305997	ENST00000498643		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
5UTR-3CDS	ENST00000486484	ENST00000264335		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
5UTR-3CDS	ENST00000486484	ENST00000571732		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
5UTR-3CDS	ENST00000486484	ENST00000573026		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
5UTR-3CDS	ENST00000486484	ENST00000575977		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
5UTR-intron	ENST00000486484	ENST00000498643		TCGA	LD	OV	TCGA-24-1424-01A	MBOAT2	chr2	9143669	-	YWHAE	chr17	1248793	-
Frame-shit	ENST00000258742	ENST00000405271		TCGA	LD	OV	TCGA-24-1424-01A	NUPL2	chr7	23221825	+	EPCAM	chr2	47604153	+
Frame-shit	ENST00000258742	ENST00000263735		TCGA	LD	OV	TCGA-24-1424-01A	NUPL2	chr7	23221825	+	EPCAM	chr2	47604153	+
Frame-shit	ENST00000410002	ENST00000405271		TCGA	LD	OV	TCGA-24-1424-01A	NUPL2	chr7	23221825	+	EPCAM	chr2	47604153	+
Frame-shit	ENST00000410002	ENST00000263735		TCGA	LD	OV	TCGA-24-1424-01A	NUPL2	chr7	23221825	+	EPCAM	chr2	47604153	+
3UTR-3CDS	ENST00000487595	ENST00000405271		TCGA	LD	OV	TCGA-24-1424-01A	NUPL2	chr7	23221825	+	EPCAM	chr2	47604153	+
3UTR-3CDS	ENST00000487595	ENST00000263735		TCGA	LD	OV	TCGA-24-1424-01A	NUPL2	chr7	23221825	+	EPCAM	chr2	47604153	+
Frame-shit	ENST00000215794	ENST00000375976		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
Frame-shit	ENST00000215794	ENST00000211379		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
Frame-shit	ENST00000215794	ENST00000439687		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
Frame-shit	ENST00000215794	ENST00000404765		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
Frame-shit	ENST00000215794	ENST00000375964		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
Frame-shit	ENST00000215794	ENST00000362049		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000470875		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000442479		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000449450		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000417144		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000551350		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000497694		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000422756		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000425649		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000434446		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000552467		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000463220		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000413922		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000454478		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000412012		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000546462		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000460147		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000383446		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000361076		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000383448		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000552605		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000471376		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000415373		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000444402		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000415345		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000550393		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000461852		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000443182		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000451932		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000419847		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000552116		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-intron	ENST00000215794	ENST00000460429		TCGA	LD	OV	TCGA-24-1424-01A	USP18	chr22	18640587	+	BAG6	chr6	31607003	-
5CDS-5UTR	ENST00000344147	ENST00000378062		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000344147	ENST00000470584		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000479629	ENST00000378062		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000479629	ENST00000470584		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000373714	ENST00000378062		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000373714	ENST00000470584		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000546109	ENST00000378062		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000546109	ENST00000470584		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000422613	ENST00000378062		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5CDS-5UTR	ENST00000422613	ENST00000470584		TCGA	LD	OV	TCGA-24-1424-01A	ZCCHC17	chr1	31821821	+	NDP	chrX	43818098	-
5UTR-3CDS	ENST00000334512	ENST00000330194		TCGA	LD	OV	TCGA-24-1424-01A	ZMIZ1	chr10	80921890	+	C10orf107	chr10	63445799	+
intron-3CDS	ENST00000478357	ENST00000330194		TCGA	LD	OV	TCGA-24-1424-01A	ZMIZ1	chr10	80921890	+	C10orf107	chr10	63445799	+
intron-3CDS	ENST00000446377	ENST00000330194		TCGA	LD	OV	TCGA-24-1424-01A	ZMIZ1	chr10	80921890	+	C10orf107	chr10	63445799	+
5CDS-5UTR	ENST00000592437	ENST00000454753		TCGA	LD	OV	TCGA-24-1424-01A	ZNF234	chr19	44654658	+	CEACAM20	chr19	45029277	-
5CDS-5UTR	ENST00000426739	ENST00000454753		TCGA	LD	OV	TCGA-24-1424-01A	ZNF234	chr19	44654658	+	CEACAM20	chr19	45029277	-
intron-5UTR	ENST00000590748	ENST00000454753		TCGA	LD	OV	TCGA-24-1424-01A	ZNF234	chr19	44654658	+	CEACAM20	chr19	45029277	-
In-frame	ENST00000601935	ENST00000389840		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000601935	ENST00000585328		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000601935	ENST00000586052		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000600313	ENST00000389840		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000600313	ENST00000585328		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000600313	ENST00000586052		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000596211	ENST00000389840		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000596211	ENST00000585328		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000596211	ENST00000586052		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000359788	ENST00000389840		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000359788	ENST00000585328		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000359788	ENST00000586052		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000601010	ENST00000389840		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000601010	ENST00000585328		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000601010	ENST00000586052		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000599168	ENST00000389840		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
In-frame	ENST00000599168	ENST00000585328		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000599168	ENST00000586052		TCGA	LD	OV	TCGA-24-1424-01A	ZNF675	chr19	23869833	-	DNAH17	chr17	76503887	-
5CDS-intron	ENST00000216281	ENST00000542035		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000216281	ENST00000544411		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000216281	ENST00000340912		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000216281	ENST00000544171		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000334701	ENST00000542035		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000334701	ENST00000544411		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000334701	ENST00000340912		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000334701	ENST00000544171		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000441629	ENST00000542035		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000441629	ENST00000544411		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000441629	ENST00000340912		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-intron	ENST00000441629	ENST00000544171		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
intron-intron	ENST00000558600	ENST00000542035		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
intron-intron	ENST00000558600	ENST00000544411		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
intron-intron	ENST00000558600	ENST00000340912		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
intron-intron	ENST00000558600	ENST00000544171		TCGA	LD	OV	TCGA-24-1425-01A	HSP90AA1	chr14	102549883	-	SENP8	chr15	72435990	+
5CDS-5UTR	ENST00000307145	ENST00000307569		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
5CDS-5UTR	ENST00000307145	ENST00000324432		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
5CDS-intron	ENST00000307145	ENST00000446600		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
5CDS-5UTR	ENST00000307145	ENST00000413936		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
5CDS-5UTR	ENST00000307145	ENST00000430490		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
5CDS-3UTR	ENST00000307145	ENST00000472426		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
5CDS-intron	ENST00000307145	ENST00000446820		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000560473	ENST00000307569		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000560473	ENST00000324432		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-intron	ENST00000560473	ENST00000446600		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000560473	ENST00000413936		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000560473	ENST00000430490		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-3UTR	ENST00000560473	ENST00000472426		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-intron	ENST00000560473	ENST00000446820		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000500533	ENST00000307569		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000500533	ENST00000324432		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-intron	ENST00000500533	ENST00000446600		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000500533	ENST00000413936		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-5UTR	ENST00000500533	ENST00000430490		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-3UTR	ENST00000500533	ENST00000472426		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
intron-intron	ENST00000500533	ENST00000446820		TCGA	LD	OV	TCGA-24-1425-01A	KLF13	chr15	31619992	+	DTX2	chr7	76109738	+
Frame-shit	ENST00000156626	ENST00000344318		TCGA	LD	OV	TCGA-24-1425-01A	ST6GALNAC1	chr17	74639590	-	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000156626	ENST00000397781		TCGA	LD	OV	TCGA-24-1425-01A	ST6GALNAC1	chr17	74639590	-	ZMAT5	chr22	30138469	-
5UTR-3CDS	ENST00000590878	ENST00000344318		TCGA	LD	OV	TCGA-24-1425-01A	ST6GALNAC1	chr17	74639590	-	ZMAT5	chr22	30138469	-
5UTR-3CDS	ENST00000590878	ENST00000397781		TCGA	LD	OV	TCGA-24-1425-01A	ST6GALNAC1	chr17	74639590	-	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000589992	ENST00000344318		TCGA	LD	OV	TCGA-24-1425-01A	ST6GALNAC1	chr17	74639590	-	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000589992	ENST00000397781		TCGA	LD	OV	TCGA-24-1425-01A	ST6GALNAC1	chr17	74639590	-	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000319481	ENST00000265304		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
Frame-shit	ENST00000319481	ENST00000498107		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000319481	ENST00000469123		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000319481	ENST00000465582		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000319481	ENST00000484178		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000319481	ENST00000481508		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
Frame-shit	ENST00000399443	ENST00000265304		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
In-frame	ENST00000399443	ENST00000498107		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000399443	ENST00000469123		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000399443	ENST00000465582		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000399443	ENST00000484178		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000399443	ENST00000481508		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
Frame-shit	ENST00000357041	ENST00000265304		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
Frame-shit	ENST00000357041	ENST00000498107		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000357041	ENST00000469123		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000357041	ENST00000465582		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000357041	ENST00000484178		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
5CDS-3UTR	ENST00000357041	ENST00000481508		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3CDS	ENST00000399441	ENST00000265304		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3CDS	ENST00000399441	ENST00000498107		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000399441	ENST00000469123		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000399441	ENST00000465582		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000399441	ENST00000484178		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000399441	ENST00000481508		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3CDS	ENST00000582618	ENST00000265304		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3CDS	ENST00000582618	ENST00000498107		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000582618	ENST00000469123		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000582618	ENST00000465582		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000582618	ENST00000484178		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
intron-3UTR	ENST00000582618	ENST00000481508		TCGA	LD	OV	TCGA-24-1426-01A	OSBPL1A	chr18	21776089	-	SSBP1	chr7	141450111	+
In-frame	ENST00000262764	ENST00000225777		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
Frame-shit	ENST00000262764	ENST00000585591		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5CDS-3UTR	ENST00000262764	ENST00000589711		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5CDS-3UTR	ENST00000262764	ENST00000588282		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5CDS-3UTR	ENST00000262764	ENST00000590201		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5CDS-3UTR	ENST00000262764	ENST00000592456		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5UTR-3CDS	ENST00000329897	ENST00000225777		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5UTR-3CDS	ENST00000329897	ENST00000585591		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5UTR-3UTR	ENST00000329897	ENST00000589711		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5UTR-3UTR	ENST00000329897	ENST00000588282		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5UTR-3UTR	ENST00000329897	ENST00000590201		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
5UTR-3UTR	ENST00000329897	ENST00000592456		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
intron-3CDS	ENST00000588281	ENST00000225777		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
intron-3CDS	ENST00000588281	ENST00000585591		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
intron-3UTR	ENST00000588281	ENST00000589711		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
intron-3UTR	ENST00000588281	ENST00000588282		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
intron-3UTR	ENST00000588281	ENST00000590201		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
intron-3UTR	ENST00000588281	ENST00000592456		TCGA	LD	OV	TCGA-24-1427-01A	PGS1	chr17	76374889	+	SYNGR2	chr17	76167820	+
Frame-shit	ENST00000326793	ENST00000453981		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
Frame-shit	ENST00000326793	ENST00000432829		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
Frame-shit	ENST00000326793	ENST00000469391		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
5CDS-intron	ENST00000326793	ENST00000382331		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
5CDS-intron	ENST00000326793	ENST00000382329		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
5CDS-intron	ENST00000326793	ENST00000493666		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-3CDS	ENST00000472860	ENST00000453981		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-3CDS	ENST00000472860	ENST00000432829		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-3CDS	ENST00000472860	ENST00000469391		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-intron	ENST00000472860	ENST00000382331		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-intron	ENST00000472860	ENST00000382329		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-intron	ENST00000472860	ENST00000493666		TCGA	LD	OV	TCGA-24-1428-01A	ACAP2	chr3	195112819	-	DOCK8	chr9	340159	+
intron-3CDS	ENST00000409262	ENST00000409561		TCGA	LD	OV	TCGA-24-1428-01A	TET3	chr2	74230293	+	C2orf78	chr2	74040604	+
Frame-shit	ENST00000261647	ENST00000323523		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
Frame-shit	ENST00000261647	ENST00000403410		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
5CDS-intron	ENST00000261647	ENST00000462884		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
Frame-shit	ENST00000486880	ENST00000323523		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
Frame-shit	ENST00000486880	ENST00000403410		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
5CDS-intron	ENST00000486880	ENST00000462884		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
3UTR-3CDS	ENST00000497842	ENST00000323523		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
3UTR-3CDS	ENST00000497842	ENST00000403410		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
3UTR-intron	ENST00000497842	ENST00000462884		TCGA	LD	OV	TCGA-24-1428-01A	TTC19	chr17	15930016	+	TMEM45A	chr3	100287666	+
5CDS-5UTR	ENST00000262713	ENST00000316902		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-5UTR	ENST00000262713	ENST00000469263		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000262713	ENST00000453702		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000262713	ENST00000529705		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000262713	ENST00000422941		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000262713	ENST00000532568		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-5UTR	ENST00000397388	ENST00000316902		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-5UTR	ENST00000397388	ENST00000469263		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000397388	ENST00000453702		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000397388	ENST00000529705		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000397388	ENST00000422941		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000397388	ENST00000532568		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-5UTR	ENST00000361265	ENST00000316902		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-5UTR	ENST00000361265	ENST00000469263		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000361265	ENST00000453702		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000361265	ENST00000529705		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000361265	ENST00000422941		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
5CDS-intron	ENST00000361265	ENST00000532568		TCGA	LD	OV	TCGA-24-1430-01A	AJUBA	chr14	23443256	-	SLC7A8	chr14	23652247	-
Frame-shit	ENST00000265348	ENST00000219473		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
Frame-shit	ENST00000265348	ENST00000570191		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
5CDS-intron	ENST00000265348	ENST00000562743		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
Frame-shit	ENST00000535468	ENST00000219473		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
Frame-shit	ENST00000535468	ENST00000570191		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
5CDS-intron	ENST00000535468	ENST00000562743		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
5UTR-3CDS	ENST00000478630	ENST00000219473		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
5UTR-3CDS	ENST00000478630	ENST00000570191		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
5UTR-intron	ENST00000478630	ENST00000562743		TCGA	LD	OV	TCGA-24-1430-01A	CUL7	chr6	43013724	-	USP10	chr16	84808766	+
Frame-shit	ENST00000445937	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000445937	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000445937	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000445937	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5CDS-3UTR	ENST00000445937	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000531443	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000531443	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000531443	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000531443	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5CDS-3UTR	ENST00000531443	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000517566	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000517566	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000517566	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000517566	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5CDS-3UTR	ENST00000517566	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5UTR-3CDS	ENST00000452423	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5UTR-3CDS	ENST00000452423	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5UTR-3CDS	ENST00000452423	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5UTR-3CDS	ENST00000452423	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5UTR-3UTR	ENST00000452423	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000442977	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000442977	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000442977	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
Frame-shit	ENST00000442977	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5CDS-3UTR	ENST00000442977	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521963	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521963	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521963	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521963	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3UTR	ENST00000521963	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000312046	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000312046	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000312046	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000312046	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3UTR	ENST00000312046	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000449762	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000449762	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000449762	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000449762	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3UTR	ENST00000449762	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000297447	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000297447	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000297447	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000297447	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3UTR	ENST00000297447	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521592	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521592	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521592	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000521592	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3UTR	ENST00000521592	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000497705	ENST00000541793		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000497705	ENST00000314151		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000497705	ENST00000569347		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3CDS	ENST00000497705	ENST00000536907		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
intron-3UTR	ENST00000497705	ENST00000561612		TCGA	LD	OV	TCGA-24-1430-01A	OXR1	chr8	107531367	+	CLEC18C	chr16	70215753	+
5CDS-intron	ENST00000372676	ENST00000279036		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000372676	ENST00000279035		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000372676	ENST00000372689		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000372676	ENST00000545755		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000372676	ENST00000535404		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000372676	ENST00000341555		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000372676	ENST00000543458		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000279036		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000279035		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000372689		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000545755		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000535404		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000341555		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
5CDS-intron	ENST00000217425	ENST00000543458		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000279036		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000279035		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000372689		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000545755		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000535404		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000341555		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000339946	ENST00000543458		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000279036		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000279035		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000372689		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000545755		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000535404		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000341555		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000488143	ENST00000543458		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000279036		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000279035		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000372689		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000545755		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000535404		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000341555		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
intron-intron	ENST00000342873	ENST00000543458		TCGA	LD	OV	TCGA-24-1430-01A	WFDC2	chr20	44099172	+	PIGT	chr20	44076275	+
Frame-shit	ENST00000369577	ENST00000557342		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000369577	ENST00000238688		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000369577	ENST00000557623		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000369577	ENST00000557431		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000339907	ENST00000557342		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000339907	ENST00000238688		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000339907	ENST00000557623		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000339907	ENST00000557431		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000392985	ENST00000557342		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000392985	ENST00000238688		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000392985	ENST00000557623		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
Frame-shit	ENST00000392985	ENST00000557431		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
3UTR-3CDS	ENST00000369578	ENST00000557342		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
3UTR-3CDS	ENST00000369578	ENST00000238688		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
3UTR-3CDS	ENST00000369578	ENST00000557623		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
3UTR-3CDS	ENST00000369578	ENST00000557431		TCGA	LD	OV	TCGA-24-1430-01A	ZNF292	chr6	87865477	+	SLIRP	chr14	78177181	+
intron-3CDS	ENST00000354293	ENST00000221466		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-3CDS	ENST00000354293	ENST00000426395		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000354293	ENST00000594823		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000354293	ENST00000599988		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000354293	ENST00000596975		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-3CDS	ENST00000600199	ENST00000221466		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-3CDS	ENST00000600199	ENST00000426395		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000600199	ENST00000594823		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000600199	ENST00000599988		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000600199	ENST00000596975		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-3CDS	ENST00000359032	ENST00000221466		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-3CDS	ENST00000359032	ENST00000426395		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000359032	ENST00000594823		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000359032	ENST00000599988		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000359032	ENST00000596975		TCGA	LD	OV	TCGA-24-1431-01A	AP2A1	chr19	50306710	+	FCGRT	chr19	50029267	+
intron-intron	ENST00000301587	ENST00000322147		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000301587	ENST00000301873		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000301587	ENST00000530785		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000301587	ENST00000529189		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000301587	ENST00000532932		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000301587	ENST00000536982		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000344546	ENST00000322147		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000344546	ENST00000301873		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000344546	ENST00000530785		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000344546	ENST00000529189		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000344546	ENST00000532932		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
intron-intron	ENST00000344546	ENST00000536982		TCGA	LD	OV	TCGA-24-1431-01A	ATP5H	chr17	73035126	-	LTBP3	chr11	65306976	-
Frame-shit	ENST00000556508	ENST00000330877		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000556508	ENST00000332972		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-3UTR	ENST00000556508	ENST00000554657		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000556508	ENST00000556623		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000556508	ENST00000555674		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000453495	ENST00000330877		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000453495	ENST00000332972		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-3UTR	ENST00000453495	ENST00000554657		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000453495	ENST00000556623		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000453495	ENST00000555674		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000414716	ENST00000330877		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000414716	ENST00000332972		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-3UTR	ENST00000414716	ENST00000554657		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000414716	ENST00000556623		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000414716	ENST00000555674		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000418279	ENST00000330877		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000418279	ENST00000332972		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-3UTR	ENST00000418279	ENST00000554657		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000418279	ENST00000556623		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
5CDS-5UTR	ENST00000418279	ENST00000555674		TCGA	LD	OV	TCGA-24-1431-01A	CEP170B	chr14	105360186	+	ADSSL1	chr14	105212573	+
Frame-shit	ENST00000341217	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000341217	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
In-frame	ENST00000581407	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000581407	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
In-frame	ENST00000582266	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000582266	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
Frame-shit	ENST00000452648	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000452648	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
Frame-shit	ENST00000582059	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000582059	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
In-frame	ENST00000583953	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000583953	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
Frame-shit	ENST00000577682	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000577682	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
Frame-shit	ENST00000583522	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000583522	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
In-frame	ENST00000581381	ENST00000268766		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
5CDS-3UTR	ENST00000581381	ENST00000593261		TCGA	LD	OV	TCGA-24-1431-01A	FAM222B	chr17	27093604	-	NEK8	chr17	27061001	+
intron-3UTR	ENST00000593786	ENST00000465846		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000476204		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000474040		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000467155		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000480872		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000429755		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000492897		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000487849		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000481995		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000460041		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000474324		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000593786	ENST00000477144		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000466037		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000491264		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000593786	ENST00000494420		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000465846		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000476204		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000474040		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000467155		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000480872		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000429755		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000492897		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000487849		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000481995		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000460041		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000474324		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-3UTR	ENST00000374796	ENST00000477144		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000466037		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000491264		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
intron-intron	ENST00000374796	ENST00000494420		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000465846		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000476204		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000474040		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000467155		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000480872		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000429755		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000492897		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000487849		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000481995		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000460041		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000474324		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-3UTR	ENST00000359003	ENST00000477144		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000466037		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000491264		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
5UTR-intron	ENST00000359003	ENST00000494420		TCGA	LD	OV	TCGA-24-1431-01A	NCOA6	chr20	33413275	-	HOXB-AS3	chr17	46677809	+
In-frame	ENST00000525364	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000525364	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000270176	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000270176	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000420247	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000420247	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000533862	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000533862	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000279270	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000279270	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000524944	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000524944	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
In-frame	ENST00000527009	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527009	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-3CDS	ENST00000534462	ENST00000317568		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000531296		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000355991		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
intron-intron	ENST00000534462	ENST00000416776		TCGA	LD	OV	TCGA-24-1431-01A	SCYL1	chr11	65300276	+	FRMD8	chr11	65172335	+
Frame-shit	ENST00000431843	ENST00000338675		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
Frame-shit	ENST00000431843	ENST00000382409		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
5CDS-intron	ENST00000431843	ENST00000525904		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
Frame-shit	ENST00000397632	ENST00000338675		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
In-frame	ENST00000397632	ENST00000382409		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
5CDS-intron	ENST00000397632	ENST00000525904		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
Frame-shit	ENST00000332725	ENST00000338675		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
Frame-shit	ENST00000332725	ENST00000382409		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
5CDS-intron	ENST00000332725	ENST00000525904		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
Frame-shit	ENST00000531205	ENST00000338675		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
In-frame	ENST00000531205	ENST00000382409		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
5CDS-intron	ENST00000531205	ENST00000525904		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
Frame-shit	ENST00000382520	ENST00000338675		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
In-frame	ENST00000382520	ENST00000382409		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
5CDS-intron	ENST00000382520	ENST00000525904		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000529486	ENST00000338675		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
intron-3CDS	ENST00000529486	ENST00000382409		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
intron-intron	ENST00000529486	ENST00000525904		TCGA	LD	OV	TCGA-24-1431-01A	SIGIRR	chr11	407062	-	DEAF1	chr11	644654	-
5CDS-intron	ENST00000336915	ENST00000442092		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000336915	ENST00000266022		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000336915	ENST00000443081		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000336915	ENST00000539992		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-3UTR	ENST00000336915	ENST00000441115		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000336915	ENST00000422955		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000336915	ENST00000421682		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000584924	ENST00000442092		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000584924	ENST00000266022		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000584924	ENST00000443081		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000584924	ENST00000539992		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-3UTR	ENST00000584924	ENST00000441115		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000584924	ENST00000422955		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
5CDS-intron	ENST00000584924	ENST00000421682		TCGA	LD	OV	TCGA-24-1431-01A	SKAP1	chr17	46423267	-	RBM6	chr3	50036873	+
In-frame	ENST00000260197	ENST00000264027		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
In-frame	ENST00000260197	ENST00000534230		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
Frame-shit	ENST00000260197	ENST00000392789		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
5CDS-3UTR	ENST00000260197	ENST00000528991		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
3UTR-3CDS	ENST00000532451	ENST00000264027		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
3UTR-3CDS	ENST00000532451	ENST00000534230		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
3UTR-3CDS	ENST00000532451	ENST00000392789		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
3UTR-3UTR	ENST00000532451	ENST00000528991		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000525532	ENST00000264027		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000525532	ENST00000534230		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000525532	ENST00000392789		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3UTR	ENST00000525532	ENST00000528991		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000532694	ENST00000264027		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000532694	ENST00000534230		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000532694	ENST00000392789		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3UTR	ENST00000532694	ENST00000528991		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000534286	ENST00000264027		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000534286	ENST00000534230		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000534286	ENST00000392789		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3UTR	ENST00000534286	ENST00000528991		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000527934	ENST00000264027		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000527934	ENST00000534230		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3CDS	ENST00000527934	ENST00000392789		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
intron-3UTR	ENST00000527934	ENST00000528991		TCGA	LD	OV	TCGA-24-1431-01A	SORL1	chr11	121393698	+	SC5D	chr11	121177766	+
Frame-shit	ENST00000225525	ENST00000395938		TCGA	LD	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567489	-	PMP22	chr17	15134397	-
Frame-shit	ENST00000225525	ENST00000312280		TCGA	LD	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567489	-	PMP22	chr17	15134397	-
Frame-shit	ENST00000225525	ENST00000494511		TCGA	LD	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567489	-	PMP22	chr17	15134397	-
5CDS-3UTR	ENST00000225525	ENST00000395936		TCGA	LD	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567489	-	PMP22	chr17	15134397	-
5CDS-intron	ENST00000225525	ENST00000426385		TCGA	LD	OV	TCGA-24-1431-01A	TAX1BP3	chr17	3567489	-	PMP22	chr17	15134397	-
Frame-shit	ENST00000415609	ENST00000442092		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000415609	ENST00000266022		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000415609	ENST00000443081		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-5UTR	ENST00000415609	ENST00000539992		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000415609	ENST00000441115		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000415609	ENST00000422955		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-intron	ENST00000415609	ENST00000421682		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000349511	ENST00000442092		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000349511	ENST00000266022		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000349511	ENST00000443081		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-5UTR	ENST00000349511	ENST00000539992		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000349511	ENST00000441115		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000349511	ENST00000422955		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-intron	ENST00000349511	ENST00000421682		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000361055	ENST00000442092		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000361055	ENST00000266022		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000361055	ENST00000443081		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-5UTR	ENST00000361055	ENST00000539992		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000361055	ENST00000441115		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000361055	ENST00000422955		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-intron	ENST00000361055	ENST00000421682		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000540295	ENST00000442092		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000540295	ENST00000266022		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
Frame-shit	ENST00000540295	ENST00000443081		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-5UTR	ENST00000540295	ENST00000539992		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000540295	ENST00000441115		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-3UTR	ENST00000540295	ENST00000422955		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
5CDS-intron	ENST00000540295	ENST00000421682		TCGA	LD	OV	TCGA-24-1431-01A	UBA3	chr3	69110965	-	RBM6	chr3	50091768	+
In-frame	ENST00000403222	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000403222	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000403222	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000403222	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
In-frame	ENST00000407373	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000407373	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000407373	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000407373	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
In-frame	ENST00000332585	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000332585	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000332585	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000332585	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
In-frame	ENST00000382310	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000382310	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000382310	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000382310	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
In-frame	ENST00000446658	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000446658	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000446658	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000446658	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
In-frame	ENST00000401475	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000401475	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000401475	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000401475	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
In-frame	ENST00000437268	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000437268	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-5UTR	ENST00000437268	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
5CDS-intron	ENST00000437268	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-3CDS	ENST00000535268	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-3CDS	ENST00000535268	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-5UTR	ENST00000535268	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-intron	ENST00000535268	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-3CDS	ENST00000496575	ENST00000262570		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-3CDS	ENST00000496575	ENST00000448878		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-5UTR	ENST00000496575	ENST00000476546		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
intron-intron	ENST00000496575	ENST00000542753		TCGA	LD	OV	TCGA-24-1435-01A	OSBP2	chr22	31266669	+	CHCHD3	chr7	132470421	-
Frame-shit	ENST00000317555	ENST00000361115		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
5CDS-5UTR	ENST00000317555	ENST00000513525		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
5CDS-5UTR	ENST00000317555	ENST00000537013		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
Frame-shit	ENST00000498926	ENST00000361115		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
5CDS-5UTR	ENST00000498926	ENST00000513525		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
5CDS-5UTR	ENST00000498926	ENST00000537013		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-3CDS	ENST00000543955	ENST00000361115		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-5UTR	ENST00000543955	ENST00000513525		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-5UTR	ENST00000543955	ENST00000537013		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-3CDS	ENST00000454808	ENST00000361115		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-5UTR	ENST00000454808	ENST00000513525		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-5UTR	ENST00000454808	ENST00000537013		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-3CDS	ENST00000541034	ENST00000361115		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-5UTR	ENST00000541034	ENST00000513525		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
intron-5UTR	ENST00000541034	ENST00000537013		TCGA	LD	OV	TCGA-24-1435-01A	PGAM5	chr12	133287653	+	CCL28	chr5	43388578	-
In-frame	ENST00000377892	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377892	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377892	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377892	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377892	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377892	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377890	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377890	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377890	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377890	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377890	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377890	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377891	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377891	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377891	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377891	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377891	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377891	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377889	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377889	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377889	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000377889	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377889	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000377889	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000535296	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000535296	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000535296	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
In-frame	ENST00000535296	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000535296	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
5CDS-3UTR	ENST00000535296	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000338663	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000338663	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000338663	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000338663	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000338663	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000338663	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000538682	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000538682	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000538682	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000538682	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000538682	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000538682	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000536981	ENST00000373913		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000536981	ENST00000401952		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000536981	ENST00000373907		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000536981	ENST00000339266		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000536981	ENST00000475894		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3UTR	ENST00000536981	ENST00000340491		TCGA	LD	OV	TCGA-24-1435-01A	SLC3A2	chr11	62623853	+	DLGAP4	chr20	35152653	+
intron-3CDS	ENST00000255608	ENST00000361757		TCGA	LD	OV	TCGA-24-1436-01A	BTBD2	chr19	2013546	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000255608	ENST00000587024		TCGA	LD	OV	TCGA-24-1436-01A	BTBD2	chr19	2013546	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000255608	ENST00000438103		TCGA	LD	OV	TCGA-24-1436-01A	BTBD2	chr19	2013546	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000590646	ENST00000361757		TCGA	LD	OV	TCGA-24-1436-01A	BTBD2	chr19	2013546	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000590646	ENST00000587024		TCGA	LD	OV	TCGA-24-1436-01A	BTBD2	chr19	2013546	-	SBNO2	chr19	1127764	-
intron-3CDS	ENST00000590646	ENST00000438103		TCGA	LD	OV	TCGA-24-1436-01A	BTBD2	chr19	2013546	-	SBNO2	chr19	1127764	-
Frame-shit	ENST00000354698	ENST00000383463		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000354698	ENST00000417226		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000354698	ENST00000502878		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000354698	ENST00000389735		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000427617	ENST00000383463		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000427617	ENST00000417226		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000427617	ENST00000502878		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000427617	ENST00000389735		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000412564	ENST00000383463		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000412564	ENST00000417226		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000412564	ENST00000502878		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000412564	ENST00000389735		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000440261	ENST00000383463		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000440261	ENST00000417226		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000440261	ENST00000502878		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
Frame-shit	ENST00000440261	ENST00000389735		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000454212	ENST00000383463		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000454212	ENST00000417226		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000454212	ENST00000502878		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
intron-3CDS	ENST00000454212	ENST00000389735		TCGA	LD	OV	TCGA-24-1436-01A	ZNF589	chr3	48282704	+	HMCES	chr3	129017197	+
In-frame	ENST00000360586	ENST00000254301		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
5CDS-3UTR	ENST00000360586	ENST00000553755		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
5CDS-3UTR	ENST00000360586	ENST00000554715		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
intron-3CDS	ENST00000420358	ENST00000254301		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000420358	ENST00000553755		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000420358	ENST00000554715		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
intron-3CDS	ENST00000359167	ENST00000254301		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000359167	ENST00000553755		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
intron-3UTR	ENST00000359167	ENST00000554715		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
5UTR-3CDS	ENST00000421192	ENST00000254301		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
5UTR-3UTR	ENST00000421192	ENST00000553755		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
5UTR-3UTR	ENST00000421192	ENST00000554715		TCGA	LD	OV	TCGA-24-1464-01A	WDHD1	chr14	55493429	-	LGALS3	chr14	55606993	+
Frame-shit	ENST00000392347	ENST00000571995		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000392347	ENST00000571880		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392347	ENST00000269347		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392347	ENST00000538809		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
Frame-shit	ENST00000389641	ENST00000571995		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000389641	ENST00000571880		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000389641	ENST00000269347		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000389641	ENST00000538809		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000392346	ENST00000571995		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000392346	ENST00000571880		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000392346	ENST00000269347		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000392346	ENST00000538809		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000327026	ENST00000571995		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000327026	ENST00000571880		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000327026	ENST00000269347		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000327026	ENST00000538809		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
Frame-shit	ENST00000392343	ENST00000571995		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000392343	ENST00000571880		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392343	ENST00000269347		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392343	ENST00000538809		TCGA	LD	OV	TCGA-24-1467-01A	CCDC57	chr17	80146095	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000601154	ENST00000413379		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000601154	ENST00000540850		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000601154	ENST00000598840		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000601154	ENST00000270225		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
intron-3CDS	ENST00000601154	ENST00000392776		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
5UTR-3CDS	ENST00000221922	ENST00000413379		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
5UTR-3CDS	ENST00000221922	ENST00000540850		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
5UTR-3CDS	ENST00000221922	ENST00000598840		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
5UTR-3CDS	ENST00000221922	ENST00000270225		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
5UTR-3CDS	ENST00000221922	ENST00000392776		TCGA	LD	OV	TCGA-24-1467-01A	CCDC9	chr19	47759866	+	SAE1	chr19	47673075	+
Frame-shit	ENST00000383737	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
Frame-shit	ENST00000395734	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
Frame-shit	ENST00000426837	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
Frame-shit	ENST00000360240	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
Frame-shit	ENST00000439356	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
intron-3CDS	ENST00000264724	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
intron-3CDS	ENST00000420772	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
intron-3CDS	ENST00000441748	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
intron-3CDS	ENST00000462206	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
In-frame	ENST00000434267	ENST00000312579		TCGA	LD	OV	TCGA-24-1467-01A	MAP4	chr3	48040128	-	CCDC85B	chr11	65658328	+
In-frame	ENST00000336915	ENST00000400451		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000336915	ENST00000403682		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000336915	ENST00000357502		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
In-frame	ENST00000336915	ENST00000356671		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
In-frame	ENST00000336915	ENST00000405993		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000584924	ENST00000400451		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000584924	ENST00000403682		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000584924	ENST00000357502		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000584924	ENST00000356671		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
Frame-shit	ENST00000584924	ENST00000405993		TCGA	LD	OV	TCGA-24-1467-01A	SKAP1	chr17	46474042	-	ZNF74	chr22	20754922	+
5CDS-intron	ENST00000378164	ENST00000523492		TCGA	LD	OV	TCGA-24-1467-01A	TAF2	chr8	120831586	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000378164	ENST00000286234		TCGA	LD	OV	TCGA-24-1467-01A	TAF2	chr8	120831586	-	DEPTOR	chr8	120940640	+
5CDS-intron	ENST00000378164	ENST00000518057		TCGA	LD	OV	TCGA-24-1467-01A	TAF2	chr8	120831586	-	DEPTOR	chr8	120940640	+
intron-intron	ENST00000519355	ENST00000523492		TCGA	LD	OV	TCGA-24-1467-01A	TAF2	chr8	120831586	-	DEPTOR	chr8	120940640	+
intron-intron	ENST00000519355	ENST00000286234		TCGA	LD	OV	TCGA-24-1467-01A	TAF2	chr8	120831586	-	DEPTOR	chr8	120940640	+
intron-intron	ENST00000519355	ENST00000518057		TCGA	LD	OV	TCGA-24-1467-01A	TAF2	chr8	120831586	-	DEPTOR	chr8	120940640	+
In-frame	ENST00000306385	ENST00000289921		TCGA	LD	OV	TCGA-24-1469-01A	BMP1	chr8	22037996	+	FAM160B2	chr8	21951951	+
3UTR-3CDS	ENST00000354870	ENST00000289921		TCGA	LD	OV	TCGA-24-1469-01A	BMP1	chr8	22037996	+	FAM160B2	chr8	21951951	+
In-frame	ENST00000397816	ENST00000289921		TCGA	LD	OV	TCGA-24-1469-01A	BMP1	chr8	22037996	+	FAM160B2	chr8	21951951	+
In-frame	ENST00000306349	ENST00000289921		TCGA	LD	OV	TCGA-24-1469-01A	BMP1	chr8	22037996	+	FAM160B2	chr8	21951951	+
In-frame	ENST00000397814	ENST00000289921		TCGA	LD	OV	TCGA-24-1469-01A	BMP1	chr8	22037996	+	FAM160B2	chr8	21951951	+
intron-3CDS	ENST00000523849	ENST00000289921		TCGA	LD	OV	TCGA-24-1469-01A	BMP1	chr8	22037996	+	FAM160B2	chr8	21951951	+
3UTR-3CDS	ENST00000515359	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000515359	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000515359	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000515359	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000515359	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000515359	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000515359	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000515359	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000515359	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000515359	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000308775	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000308775	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000308775	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000308775	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000308775	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000308775	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000308775	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000308775	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000308775	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000308775	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000541308	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000541308	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000541308	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000541308	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000541308	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000541308	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000541308	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000541308	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000541308	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000541308	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000539901	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000539901	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000539901	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000539901	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000539901	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000539901	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000539901	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000539901	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000539901	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000539901	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000545947	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000545947	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000545947	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000545947	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000545947	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000545947	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000545947	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000545947	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000545947	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000545947	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000538711	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000538711	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000538711	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-3CDS	ENST00000538711	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000538711	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000538711	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000538711	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000538711	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-5UTR	ENST00000538711	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
3UTR-intron	ENST00000538711	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-3CDS	ENST00000479935	ENST00000383737		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-3CDS	ENST00000479935	ENST00000395734		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-3CDS	ENST00000479935	ENST00000426837		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-3CDS	ENST00000479935	ENST00000360240		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-intron	ENST00000479935	ENST00000439356		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-intron	ENST00000479935	ENST00000264724		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-intron	ENST00000479935	ENST00000420772		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-5UTR	ENST00000479935	ENST00000441748		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-5UTR	ENST00000479935	ENST00000462206		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
intron-intron	ENST00000479935	ENST00000434267		TCGA	LD	OV	TCGA-24-1469-01A	DAG1	chr3	49571113	+	MAP4	chr3	47919013	-
5CDS-intron	ENST00000324896	ENST00000257622		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000324896	ENST00000446813		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-3UTR	ENST00000324896	ENST00000395270		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000324896	ENST00000358357		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000324896	ENST00000434423		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000353920	ENST00000257622		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000353920	ENST00000446813		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-3UTR	ENST00000353920	ENST00000395270		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000353920	ENST00000358357		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000353920	ENST00000434423		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000346152	ENST00000257622		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000346152	ENST00000446813		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-3UTR	ENST00000346152	ENST00000395270		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000346152	ENST00000358357		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000346152	ENST00000434423		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000416070	ENST00000257622		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000416070	ENST00000446813		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-3UTR	ENST00000416070	ENST00000395270		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000416070	ENST00000358357		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000416070	ENST00000434423		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000443166	ENST00000257622		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000443166	ENST00000446813		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-3UTR	ENST00000443166	ENST00000395270		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000443166	ENST00000358357		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5CDS-intron	ENST00000443166	ENST00000434423		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
intron-intron	ENST00000438130	ENST00000257622		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
intron-intron	ENST00000438130	ENST00000446813		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
intron-3UTR	ENST00000438130	ENST00000395270		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
intron-intron	ENST00000438130	ENST00000358357		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
intron-intron	ENST00000438130	ENST00000434423		TCGA	LD	OV	TCGA-24-1469-01A	GTF2I	chr7	74114964	+	POM121	chr7	72419457	+
5UTR-5UTR	ENST00000219439	ENST00000219150		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-3UTR	ENST00000219439	ENST00000566619		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-5UTR	ENST00000219439	ENST00000570045		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-5UTR	ENST00000219439	ENST00000565497		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
intron-5UTR	ENST00000565275	ENST00000219150		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
intron-3UTR	ENST00000565275	ENST00000566619		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
intron-5UTR	ENST00000565275	ENST00000570045		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
intron-5UTR	ENST00000565275	ENST00000565497		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-5UTR	ENST00000434463	ENST00000219150		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-3UTR	ENST00000434463	ENST00000566619		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-5UTR	ENST00000434463	ENST00000570045		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
5UTR-5UTR	ENST00000434463	ENST00000565497		TCGA	LD	OV	TCGA-24-1469-01A	HSDL1	chr16	84178685	-	CORO1A	chr16	30196530	+
Frame-shit	ENST00000534064	ENST00000591778		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000534064	ENST00000262776		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000534064	ENST00000585407		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-3CDS	ENST00000535943	ENST00000591778		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-3CDS	ENST00000535943	ENST00000262776		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-intron	ENST00000535943	ENST00000585407		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-3CDS	ENST00000525931	ENST00000591778		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-3CDS	ENST00000525931	ENST00000262776		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-intron	ENST00000525931	ENST00000585407		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000529807	ENST00000591778		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000529807	ENST00000262776		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000529807	ENST00000585407		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000527522	ENST00000591778		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
Frame-shit	ENST00000527522	ENST00000262776		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
5CDS-intron	ENST00000527522	ENST00000585407		TCGA	LD	OV	TCGA-24-1469-01A	INTS4	chr11	77705636	-	LGALS3BP	chr17	76968786	-
intron-intron	ENST00000264674	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000264674	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000392736	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000464456	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000472280	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-5UTR	ENST00000494292	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000468789	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000460814	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000433243	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000316428		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-5UTR	ENST00000485957	ENST00000264676		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000523069		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000397805		TCGA	LD	OV	TCGA-24-1469-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-3CDS	ENST00000262244	ENST00000333916		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
5UTR-3CDS	ENST00000262244	ENST00000535437		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
5UTR-intron	ENST00000262244	ENST00000520187		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
5UTR-5UTR	ENST00000262244	ENST00000495958		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
intron-3CDS	ENST00000603061	ENST00000333916		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
intron-3CDS	ENST00000603061	ENST00000535437		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
intron-intron	ENST00000603061	ENST00000520187		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
intron-5UTR	ENST00000603061	ENST00000495958		TCGA	LD	OV	TCGA-24-1469-01A	MOB3B	chr9	27529553	-	CAAP1	chr9	26861137	-
intron-3CDS	ENST00000393651	ENST00000356362		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000393651	ENST00000469408		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
Frame-shit	ENST00000357311	ENST00000356362		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
Frame-shit	ENST00000357311	ENST00000469408		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
Frame-shit	ENST00000489828	ENST00000356362		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
Frame-shit	ENST00000489828	ENST00000469408		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000493638	ENST00000356362		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
intron-3CDS	ENST00000493638	ENST00000469408		TCGA	LD	OV	TCGA-24-1469-01A	SRPK2	chr7	104909253	-	PUS7	chr7	105122887	-
In-frame	ENST00000309295	ENST00000265465		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
In-frame	ENST00000309295	ENST00000541089		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
5CDS-intron	ENST00000309295	ENST00000534785		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
intron-3CDS	ENST00000529596	ENST00000265465		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
intron-3CDS	ENST00000529596	ENST00000541089		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
intron-intron	ENST00000529596	ENST00000534785		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
intron-3CDS	ENST00000533364	ENST00000265465		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
intron-3CDS	ENST00000533364	ENST00000541089		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
intron-intron	ENST00000533364	ENST00000534785		TCGA	LD	OV	TCGA-24-1470-01A	EHBP1L1	chr11	65343877	+	POLA2	chr11	65061624	+
5CDS-5UTR	ENST00000307968	ENST00000379249		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379264		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379272		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379255		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000296869		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379246		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379244		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000544770		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000543479		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000477640		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000307968	ENST00000357096		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000379240		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307968	ENST00000431707		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379249		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379264		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379272		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379255		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000296869		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379246		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379244		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000544770		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000543479		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000477640		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000307954	ENST00000357096		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000379240		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000307954	ENST00000431707		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379249		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379264		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379272		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379255		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000296869		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379246		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379244		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000544770		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000543479		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000477640		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000510461	ENST00000357096		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000379240		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000510461	ENST00000431707		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379249		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379264		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379272		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379255		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000296869		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379246		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379244		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000544770		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000543479		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000477640		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-intron	ENST00000511848	ENST00000357096		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000379240		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
5CDS-5UTR	ENST00000511848	ENST00000431707		TCGA	LD	OV	TCGA-24-1470-01A	FNIP1	chr5	131034610	-	ACSL6	chr5	131329944	-
Frame-shit	ENST00000267163	ENST00000360473		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50592959	+
5CDS-intron	ENST00000267163	ENST00000312942		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50592959	+
intron-3CDS	ENST00000484879	ENST00000360473		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50592959	+
intron-intron	ENST00000484879	ENST00000312942		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	KCNRG	chr13	50592959	+
5CDS-intron	ENST00000267163	ENST00000478111		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
5CDS-intron	ENST00000267163	ENST00000420995		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
5CDS-3UTR	ENST00000267163	ENST00000378182		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
5CDS-intron	ENST00000267163	ENST00000356017		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
5CDS-intron	ENST00000267163	ENST00000457662		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
5CDS-intron	ENST00000267163	ENST00000298772		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
intron-intron	ENST00000484879	ENST00000478111		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
intron-intron	ENST00000484879	ENST00000420995		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
intron-3UTR	ENST00000484879	ENST00000378182		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
intron-intron	ENST00000484879	ENST00000356017		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
intron-intron	ENST00000484879	ENST00000457662		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
intron-intron	ENST00000484879	ENST00000298772		TCGA	LD	OV	TCGA-24-1470-01A	RB1	chr13	48939107	+	TRIM13	chr13	50592506	+
In-frame	ENST00000229729	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000229729	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000229729	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000229729	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000544672	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000544672	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000544672	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000544672	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000375562	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000375562	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
In-frame	ENST00000375562	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
5CDS-intron	ENST00000375562	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000465707	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000465707	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000465707	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000465707	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000417894	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000417894	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000417894	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000417894	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000550821	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000550821	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000550821	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550821	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000550401	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000550401	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000550401	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000550401	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000492911	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000492911	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000492911	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000492911	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000453831	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000453831	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000453831	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000453831	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000546461	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000546461	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000546461	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000546461	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000551168	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000551168	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000551168	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000551168	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000495620	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000495620	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000495620	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495620	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000425238	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000425238	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000425238	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000425238	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000548188	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000548188	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000548188	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000548188	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000549663	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000549663	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000549663	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549663	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000469478	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000469478	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000469478	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000469478	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000415517	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000415517	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000415517	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000415517	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547288	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547288	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547288	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547288	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547493	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547493	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547493	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547493	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000463111	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000463111	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000463111	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000463111	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000383379	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000383379	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000383379	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000383379	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547684	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547684	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000547684	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000547684	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000549677	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000549677	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000549677	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000549677	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000497745	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000497745	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000497745	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000497745	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000366281	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000366281	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000366281	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000366281	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000442152	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000442152	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000442152	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000442152	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000553147	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000553147	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000553147	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553147	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000553121	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000553121	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000553121	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000553121	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000495181	ENST00000375244		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000495181	ENST00000451343		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-3CDS	ENST00000495181	ENST00000375247		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000479795		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000433037		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000549232		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000383159		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000489006		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000469250		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000440248		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000550212		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000548649		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000424718		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000475986		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000550539		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000471059		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000551808		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000548628		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000549652		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000553092		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000552665		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000465958		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000546684		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000464376		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000552149		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
intron-intron	ENST00000495181	ENST00000551201		TCGA	LD	OV	TCGA-24-1470-01A	SLC44A4	chr6	31836932	-	TNXB	chr6	32010139	-
Frame-shit	ENST00000266088	ENST00000535622		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000400246		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000266091		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000382105		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000400249		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000382112		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000382111		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000266088	ENST00000400248		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-3UTR	ENST00000266088	ENST00000494060		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-intron	ENST00000266088	ENST00000536766		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-intron	ENST00000266088	ENST00000400242		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-5UTR	ENST00000266088	ENST00000539165		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000535622		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000400246		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000266091		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000382105		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000400249		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000382112		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000382111		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
Frame-shit	ENST00000543737	ENST00000400248		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-3UTR	ENST00000543737	ENST00000494060		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-intron	ENST00000543737	ENST00000536766		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-intron	ENST00000543737	ENST00000400242		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-5UTR	ENST00000543737	ENST00000539165		TCGA	LD	OV	TCGA-24-1470-01A	SLC5A1	chr22	32487749	+	DEPDC5	chr22	32266576	+
5CDS-3UTR	ENST00000369796	ENST00000344188		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-3UTR	ENST00000369796	ENST00000329608		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369796	ENST00000369802		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369796	ENST00000420111		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369796	ENST00000369801		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369796	ENST00000526001		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-3UTR	ENST00000369795	ENST00000344188		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-3UTR	ENST00000369795	ENST00000329608		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369795	ENST00000369802		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369795	ENST00000420111		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369795	ENST00000369801		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
5CDS-intron	ENST00000369795	ENST00000526001		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-3UTR	ENST00000369794	ENST00000344188		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-3UTR	ENST00000369794	ENST00000329608		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000369794	ENST00000369802		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000369794	ENST00000420111		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000369794	ENST00000369801		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000369794	ENST00000526001		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-3UTR	ENST00000461054	ENST00000344188		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-3UTR	ENST00000461054	ENST00000329608		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000461054	ENST00000369802		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000461054	ENST00000420111		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000461054	ENST00000369801		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
intron-intron	ENST00000461054	ENST00000526001		TCGA	LD	OV	TCGA-24-1470-01A	STRIP1	chr1	110585892	+	CSF1	chr1	110472203	+
In-frame	ENST00000296794	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000296794	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000296794	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000296794	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000287898	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000287898	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000287898	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000287898	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000545377	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000545377	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000545377	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000545377	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000513042	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000513042	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000513042	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000513042	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000437974	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000437974	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000437974	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000437974	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000426542	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000426542	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000426542	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
In-frame	ENST00000426542	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000296799	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000296799	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000296799	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000296799	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000513841	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000513841	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000513841	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000513841	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000512883	ENST00000360295		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000512883	ENST00000317338		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000512883	ENST00000442608		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
intron-3CDS	ENST00000512883	ENST00000335960		TCGA	LD	OV	TCGA-24-1471-01A	ARHGEF28	chr5	72980709	+	SEZ6	chr17	27296970	-
5UTR-3CDS	ENST00000383737	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-5UTR	ENST00000383737	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-intron	ENST00000383737	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-3CDS	ENST00000395734	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-5UTR	ENST00000395734	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-intron	ENST00000395734	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-3CDS	ENST00000426837	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-5UTR	ENST00000426837	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-intron	ENST00000426837	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-3CDS	ENST00000360240	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-5UTR	ENST00000360240	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-intron	ENST00000360240	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-3CDS	ENST00000439356	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-5UTR	ENST00000439356	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
5UTR-intron	ENST00000439356	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-3CDS	ENST00000264724	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-5UTR	ENST00000264724	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-intron	ENST00000264724	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-3CDS	ENST00000420772	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-5UTR	ENST00000420772	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-intron	ENST00000420772	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-3CDS	ENST00000441748	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-5UTR	ENST00000441748	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-intron	ENST00000441748	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-3CDS	ENST00000462206	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-5UTR	ENST00000462206	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-intron	ENST00000462206	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-3CDS	ENST00000434267	ENST00000380649		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-5UTR	ENST00000434267	ENST00000457468		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
intron-intron	ENST00000434267	ENST00000461025		TCGA	LD	OV	TCGA-24-1471-01A	MAP4	chr3	48130263	-	HADHA	chr2	26462011	-
Frame-shit	ENST00000307630	ENST00000367282		TCGA	LD	OV	TCGA-24-1471-01A	YWHAG	chr7	75988039	-	GPR37L1	chr1	202096869	+
5UTR-3CDS	ENST00000295974	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000295974	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000295974	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000295974	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000295974	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000295974	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000295974	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000295974	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000513140	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000513140	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000513140	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000513140	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000513140	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000513140	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000513140	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000513140	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000508593	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000508593	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000508593	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000508593	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000508593	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000508593	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000508593	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000508593	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000506352	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000506352	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000506352	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000506352	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000506352	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000506352	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000506352	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000506352	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000511572	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000511572	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000511572	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-5UTR	ENST00000511572	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000511572	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000511572	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000511572	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-intron	ENST00000511572	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-3CDS	ENST00000543538	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-3CDS	ENST00000543538	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-5UTR	ENST00000543538	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-5UTR	ENST00000543538	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000543538	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000543538	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000543538	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000543538	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-3CDS	ENST00000502841	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-3CDS	ENST00000502841	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-5UTR	ENST00000502841	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-5UTR	ENST00000502841	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000502841	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000502841	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000502841	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000502841	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-3CDS	ENST00000504305	ENST00000290974		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-3CDS	ENST00000504305	ENST00000511071		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-5UTR	ENST00000504305	ENST00000515312		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-5UTR	ENST00000504305	ENST00000515169		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000504305	ENST00000509171		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000504305	ENST00000503000		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000504305	ENST00000508471		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
intron-intron	ENST00000504305	ENST00000505421		TCGA	LD	OV	TCGA-24-1474-01A	APBB2	chr4	41216422	-	ZFYVE28	chr4	2355800	-
5UTR-3CDS	ENST00000319670	ENST00000341500		TCGA	LD	OV	TCGA-24-1474-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
5UTR-3CDS	ENST00000319670	ENST00000302850		TCGA	LD	OV	TCGA-24-1474-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000341500		TCGA	LD	OV	TCGA-24-1474-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000302850		TCGA	LD	OV	TCGA-24-1474-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
5UTR-intron	ENST00000235307	ENST00000561978		TCGA	LD	OV	TCGA-24-1474-01A	C1orf21	chr1	184356502	+	PCAT1	chr8	127889917	+
intron-intron	ENST00000367514	ENST00000561978		TCGA	LD	OV	TCGA-24-1474-01A	C1orf21	chr1	184356502	+	PCAT1	chr8	127889917	+
Frame-shit	ENST00000455140	ENST00000269878		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000455140	ENST00000379859		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000455140	ENST00000541493		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
Frame-shit	ENST00000248070	ENST00000269878		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000248070	ENST00000379859		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000248070	ENST00000541493		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
Frame-shit	ENST00000535753	ENST00000269878		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000535753	ENST00000379859		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000535753	ENST00000541493		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
Frame-shit	ENST00000594975	ENST00000269878		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000594975	ENST00000379859		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000594975	ENST00000541493		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
intron-3CDS	ENST00000602009	ENST00000269878		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
intron-intron	ENST00000602009	ENST00000379859		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
intron-intron	ENST00000602009	ENST00000541493		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
Frame-shit	ENST00000597937	ENST00000269878		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000597937	ENST00000379859		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000597937	ENST00000541493		TCGA	LD	OV	TCGA-24-1474-01A	EPS15L1	chr19	16582724	-	CIB3	chr19	16280533	-
5CDS-intron	ENST00000481110	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000481110	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000481110	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000481110	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000481110	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000481110	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000481110	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000440486	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000412135	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000340107	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000260795	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
5CDS-intron	ENST00000352904	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000446906		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000377072		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000307729		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000377059		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000495130		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000377100		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
intron-intron	ENST00000474521	ENST00000377091		TCGA	LD	OV	TCGA-24-1474-01A	FGFR3	chr4	1807631	+	MLLT10	chr10	22028959	+
3UTR-5UTR	ENST00000414046	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-5UTR	ENST00000414046	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
3UTR-intron	ENST00000414046	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000419355	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000419355	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000419355	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000457127	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000457127	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000457127	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000423496	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000423496	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000423496	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	HCP5	chr6	31368540	+	LY6G6C	chr6	31687087	-
Frame-shit	ENST00000440884	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000440884	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000416682	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000416682	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000429436	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000429436	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000303622	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000303622	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000216288	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000216288	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000553942	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000553942	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000335102	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
Frame-shit	ENST00000335102	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
intron-3CDS	ENST00000561071	ENST00000423312		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
intron-3CDS	ENST00000561071	ENST00000315264		TCGA	LD	OV	TCGA-24-1474-01A	MARK3	chr14	103923549	+	KIF26A	chr14	104633196	+
intron-5UTR	ENST00000449934	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000449934	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000449934	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000417899	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000417899	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000417899	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000497496	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000497496	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000497496	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000427477	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000427477	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000427477	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000446505	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000446505	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000446505	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000547767	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000547767	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547767	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000400322	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000400322	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400322	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000493320	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000493320	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000493320	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000400325	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000400325	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000400325	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000547609	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000547609	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000547609	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000420259	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000420259	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000420259	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000468858	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000468858	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000468858	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000418465	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000418465	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000418465	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000432479	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000432479	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000432479	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000552236	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000552236	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000552236	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000438928	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000438928	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000438928	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000486844	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000486844	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000486844	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000415525	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000415525	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000415525	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000414473	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000414473	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000414473	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000546529	ENST00000495859		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-5UTR	ENST00000546529	ENST00000375819		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000497123		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000434915		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000467714		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000428498		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000480025		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000428121		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000470946		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000383413		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000470881		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000419939		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000479794		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
intron-intron	ENST00000546529	ENST00000448386		TCGA	LD	OV	TCGA-24-1474-01A	MICA	chr6	31368540	+	LY6G6C	chr6	31687087	-
Frame-shit	ENST00000261745	ENST00000389153		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
Frame-shit	ENST00000261745	ENST00000608853		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
Frame-shit	ENST00000261745	ENST00000377617		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000261745	ENST00000550104		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000261745	ENST00000542287		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
5CDS-3UTR	ENST00000261745	ENST00000535949		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
5CDS-intron	ENST00000261745	ENST00000549455		TCGA	LD	OV	TCGA-24-1474-01A	NAA25	chr12	112498074	-	ATXN2	chr12	111891649	-
5UTR-3CDS	ENST00000494857	ENST00000263035		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
5UTR-intron	ENST00000494857	ENST00000465617		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-3CDS	ENST00000522656	ENST00000263035		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-intron	ENST00000522656	ENST00000465617		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
5UTR-3CDS	ENST00000470360	ENST00000263035		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
5UTR-intron	ENST00000470360	ENST00000465617		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-3CDS	ENST00000004531	ENST00000263035		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-intron	ENST00000004531	ENST00000465617		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-3CDS	ENST00000398090	ENST00000263035		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-intron	ENST00000398090	ENST00000465617		TCGA	LD	OV	TCGA-24-1474-01A	SLC7A2	chr8	17359811	+	DHTKD1	chr10	12154899	+
intron-3CDS	ENST00000399640	ENST00000329321		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
intron-3UTR	ENST00000399640	ENST00000470071		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
5UTR-3CDS	ENST00000319914	ENST00000329321		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
5UTR-3UTR	ENST00000319914	ENST00000470071		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
5UTR-3CDS	ENST00000521180	ENST00000329321		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
5UTR-3UTR	ENST00000521180	ENST00000470071		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
5UTR-3CDS	ENST00000522652	ENST00000329321		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
5UTR-3UTR	ENST00000522652	ENST00000470071		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
intron-3CDS	ENST00000519435	ENST00000329321		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
intron-3UTR	ENST00000519435	ENST00000470071		TCGA	LD	OV	TCGA-24-1474-01A	ST3GAL1	chr8	134583936	-	GPR39	chr2	133402674	+
intron-intron	ENST00000413465	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000413465	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
intron-intron	ENST00000359597	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000359597	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-intron	ENST00000269305	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-5UTR	ENST00000269305	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-intron	ENST00000455263	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-5UTR	ENST00000455263	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-intron	ENST00000420246	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-5UTR	ENST00000420246	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-intron	ENST00000445888	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
5UTR-5UTR	ENST00000445888	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
intron-intron	ENST00000574684	ENST00000401766		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000574684	ENST00000261707		TCGA	LD	OV	TCGA-24-1474-01A	TP53	chr17	7590695	-	SLC6A4	chr17	28549933	-
In-frame	ENST00000316462	ENST00000287585		TCGA	LD	OV	TCGA-24-1474-01A	ZNF587B	chr19	58350517	+	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000316462	ENST00000495730		TCGA	LD	OV	TCGA-24-1474-01A	ZNF587B	chr19	58350517	+	LHFPL4	chr3	9547887	-
In-frame	ENST00000442832	ENST00000287585		TCGA	LD	OV	TCGA-24-1474-01A	ZNF587B	chr19	58350517	+	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000442832	ENST00000495730		TCGA	LD	OV	TCGA-24-1474-01A	ZNF587B	chr19	58350517	+	LHFPL4	chr3	9547887	-
In-frame	ENST00000594901	ENST00000287585		TCGA	LD	OV	TCGA-24-1474-01A	ZNF587B	chr19	58350517	+	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000594901	ENST00000495730		TCGA	LD	OV	TCGA-24-1474-01A	ZNF587B	chr19	58350517	+	LHFPL4	chr3	9547887	-
3UTR-5UTR	ENST00000592613	ENST00000269703		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
3UTR-intron	ENST00000592613	ENST00000601005		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
5CDS-5UTR	ENST00000591366	ENST00000269703		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
5CDS-intron	ENST00000591366	ENST00000601005		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
5CDS-5UTR	ENST00000592160	ENST00000269703		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
5CDS-intron	ENST00000592160	ENST00000601005		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
5CDS-5UTR	ENST00000343769	ENST00000269703		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
5CDS-intron	ENST00000343769	ENST00000601005		TCGA	LD	OV	TCGA-24-1474-01A	ZNF93	chr19	20011900	+	CYP4F22	chr19	15634504	+
In-frame	ENST00000336665	ENST00000314787		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000336665	ENST00000426190		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000336665	ENST00000519088		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
5CDS-intron	ENST00000336665	ENST00000520018		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000304032	ENST00000314787		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000304032	ENST00000426190		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000304032	ENST00000519088		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
5CDS-intron	ENST00000304032	ENST00000520018		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-3CDS	ENST00000409538	ENST00000314787		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-3CDS	ENST00000409538	ENST00000426190		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-3CDS	ENST00000409538	ENST00000519088		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-intron	ENST00000409538	ENST00000520018		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-3CDS	ENST00000428334	ENST00000314787		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-3CDS	ENST00000428334	ENST00000426190		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-3CDS	ENST00000428334	ENST00000519088		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
intron-intron	ENST00000428334	ENST00000520018		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000409457	ENST00000314787		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000409457	ENST00000426190		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
In-frame	ENST00000409457	ENST00000519088		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
5CDS-intron	ENST00000409457	ENST00000520018		TCGA	LD	OV	TCGA-24-1544-01A	AGAP1	chr2	236403493	+	PINX1	chr8	10683754	-
Frame-shit	ENST00000590333	ENST00000246554		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000590333	ENST00000592141		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000590333	ENST00000392201		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000309383	ENST00000246554		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000309383	ENST00000592141		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000309383	ENST00000392201		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000585418	ENST00000246554		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000585418	ENST00000592141		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000585418	ENST00000392201		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000326848	ENST00000246554		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000326848	ENST00000592141		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
Frame-shit	ENST00000326848	ENST00000392201		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000588584	ENST00000246554		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000588584	ENST00000592141		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000588584	ENST00000392201		TCGA	LD	OV	TCGA-24-1544-01A	BRSK1	chr19	55816954	+	COX6B1	chr19	36149496	+
intron-3CDS	ENST00000356093	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000356093	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000398863	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000398863	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000343067	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000343067	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000349460	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000349460	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000373800	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000373800	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000347529	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000347529	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000373798	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000373798	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
5UTR-3CDS	ENST00000373797	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
5UTR-3UTR	ENST00000373797	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3CDS	ENST00000460378	ENST00000373830		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
intron-3UTR	ENST00000460378	ENST00000495995		TCGA	LD	OV	TCGA-24-1544-01A	EPB41	chr1	29241280	+	TRNAU1AP	chr1	28880152	+
5UTR-5UTR	ENST00000599470	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000599470	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000321944	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000321944	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000358301	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000358301	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
3UTR-5UTR	ENST00000597766	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
3UTR-5UTR	ENST00000597766	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000593690	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000593690	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000599386	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5UTR-5UTR	ENST00000599386	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000435673	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000435673	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000360442	ENST00000427624		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000360442	ENST00000597582		TCGA	LD	OV	TCGA-24-1544-01A	PAK4	chr19	39616559	+	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000265107	ENST00000512496		TCGA	LD	OV	TCGA-24-1544-01A	WDR70	chr5	37396672	+	EGFLAM-AS4	chr5	38286463	-
5CDS-5UTR	ENST00000504564	ENST00000512496		TCGA	LD	OV	TCGA-24-1544-01A	WDR70	chr5	37396672	+	EGFLAM-AS4	chr5	38286463	-
intron-5UTR	ENST00000510699	ENST00000512496		TCGA	LD	OV	TCGA-24-1544-01A	WDR70	chr5	37396672	+	EGFLAM-AS4	chr5	38286463	-
5CDS-intron	ENST00000262305	ENST00000567216		TCGA	LD	OV	TCGA-24-1545-01A	RAB11FIP3	chr16	476720	+	CAPN15	chr16	596817	+
5CDS-5UTR	ENST00000262305	ENST00000219611		TCGA	LD	OV	TCGA-24-1545-01A	RAB11FIP3	chr16	476720	+	CAPN15	chr16	596817	+
5CDS-intron	ENST00000457159	ENST00000567216		TCGA	LD	OV	TCGA-24-1545-01A	RAB11FIP3	chr16	476720	+	CAPN15	chr16	596817	+
5CDS-5UTR	ENST00000457159	ENST00000219611		TCGA	LD	OV	TCGA-24-1545-01A	RAB11FIP3	chr16	476720	+	CAPN15	chr16	596817	+
intron-intron	ENST00000450428	ENST00000567216		TCGA	LD	OV	TCGA-24-1545-01A	RAB11FIP3	chr16	476720	+	CAPN15	chr16	596817	+
intron-5UTR	ENST00000450428	ENST00000219611		TCGA	LD	OV	TCGA-24-1545-01A	RAB11FIP3	chr16	476720	+	CAPN15	chr16	596817	+
5UTR-3CDS	ENST00000430629	ENST00000263980		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-intron	ENST00000430629	ENST00000490329		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-intron	ENST00000430629	ENST00000545949		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-intron	ENST00000430629	ENST00000374086		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-3CDS	ENST00000536657	ENST00000263980		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-intron	ENST00000536657	ENST00000490329		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-intron	ENST00000536657	ENST00000545949		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
5UTR-intron	ENST00000536657	ENST00000374086		TCGA	LD	OV	TCGA-24-1545-01A	WASF2	chr1	27816497	-	SLC9A1	chr1	27429803	-
Frame-shit	ENST00000263253	ENST00000400314		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
Frame-shit	ENST00000263253	ENST00000400310		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
Frame-shit	ENST00000263253	ENST00000449640		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
Frame-shit	ENST00000263253	ENST00000400309		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
Frame-shit	ENST00000263253	ENST00000400308		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
Frame-shit	ENST00000263253	ENST00000400304		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
5CDS-intron	ENST00000263253	ENST00000423045		TCGA	LD	OV	TCGA-24-1546-01A	EP300	chr22	41558783	+	PCBP3	chr21	47330816	+
Frame-shit	ENST00000373316	ENST00000350425		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000373316	ENST00000343533		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000373316	ENST00000341514		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000442431	ENST00000350425		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000442431	ENST00000343533		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000442431	ENST00000341514		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000537456	ENST00000350425		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000537456	ENST00000343533		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000537456	ENST00000341514		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
intron-3CDS	ENST00000476531	ENST00000350425		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
intron-3CDS	ENST00000476531	ENST00000343533		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
intron-3CDS	ENST00000476531	ENST00000341514		TCGA	LD	OV	TCGA-24-1548-01A	PGK1	chrX	77365414	+	ATP7A	chrX	77294334	+
Frame-shit	ENST00000334983	ENST00000262432		TCGA	LD	OV	TCGA-24-1549-01A	CMTM7	chr3	32433557	+	METTL2B	chr7	128119212	+
Frame-shit	ENST00000334983	ENST00000480046		TCGA	LD	OV	TCGA-24-1549-01A	CMTM7	chr3	32433557	+	METTL2B	chr7	128119212	+
5CDS-intron	ENST00000334983	ENST00000473488		TCGA	LD	OV	TCGA-24-1549-01A	CMTM7	chr3	32433557	+	METTL2B	chr7	128119212	+
Frame-shit	ENST00000349718	ENST00000262432		TCGA	LD	OV	TCGA-24-1549-01A	CMTM7	chr3	32433557	+	METTL2B	chr7	128119212	+
Frame-shit	ENST00000349718	ENST00000480046		TCGA	LD	OV	TCGA-24-1549-01A	CMTM7	chr3	32433557	+	METTL2B	chr7	128119212	+
5CDS-intron	ENST00000349718	ENST00000473488		TCGA	LD	OV	TCGA-24-1549-01A	CMTM7	chr3	32433557	+	METTL2B	chr7	128119212	+
intron-3CDS	ENST00000367604	ENST00000369110		TCGA	LD	OV	TCGA-24-1549-01A	HIVEP2	chr6	143267081	-	PREP	chr6	105733455	-
intron-3CDS	ENST00000367603	ENST00000369110		TCGA	LD	OV	TCGA-24-1549-01A	HIVEP2	chr6	143267081	-	PREP	chr6	105733455	-
intron-3CDS	ENST00000012134	ENST00000369110		TCGA	LD	OV	TCGA-24-1549-01A	HIVEP2	chr6	143267081	-	PREP	chr6	105733455	-
intron-3CDS	ENST00000474532	ENST00000369110		TCGA	LD	OV	TCGA-24-1549-01A	HIVEP2	chr6	143267081	-	PREP	chr6	105733455	-
5UTR-5UTR	ENST00000337530	ENST00000399215		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000481477		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000399212		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000332131		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000399205		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000399208		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000399201		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000337530	ENST00000399207		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000399215		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000481477		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000399212		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000332131		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000399205		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000399208		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000399201		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000374244	ENST00000399207		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000399215		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000481477		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000399212		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000332131		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000399205		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000399208		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000399201		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
5UTR-5UTR	ENST00000536272	ENST00000399207		TCGA	LD	OV	TCGA-24-1549-01A	KIAA1958	chr9	115249398	+	SETD4	chr21	37431222	-
In-frame	ENST00000315796	ENST00000392584		TCGA	LD	OV	TCGA-24-1549-01A	METAP1D	chr2	172864916	+	HAT1	chr2	172841096	+
5CDS-intron	ENST00000315796	ENST00000460481		TCGA	LD	OV	TCGA-24-1549-01A	METAP1D	chr2	172864916	+	HAT1	chr2	172841096	+
5CDS-intron	ENST00000315796	ENST00000264108		TCGA	LD	OV	TCGA-24-1549-01A	METAP1D	chr2	172864916	+	HAT1	chr2	172841096	+
intron-3CDS	ENST00000488581	ENST00000392584		TCGA	LD	OV	TCGA-24-1549-01A	METAP1D	chr2	172864916	+	HAT1	chr2	172841096	+
intron-intron	ENST00000488581	ENST00000460481		TCGA	LD	OV	TCGA-24-1549-01A	METAP1D	chr2	172864916	+	HAT1	chr2	172841096	+
intron-intron	ENST00000488581	ENST00000264108		TCGA	LD	OV	TCGA-24-1549-01A	METAP1D	chr2	172864916	+	HAT1	chr2	172841096	+
In-frame	ENST00000356175	ENST00000325874		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000358273	ENST00000325874		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000431387	ENST00000325874		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000431387	ENST00000581280		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000431387	ENST00000394744		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	OV	TCGA-24-1549-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000336915	ENST00000376741		TCGA	LD	OV	TCGA-24-1549-01A	SKAP1	chr17	46423267	-	SP2	chr17	45992678	+
In-frame	ENST00000584924	ENST00000376741		TCGA	LD	OV	TCGA-24-1549-01A	SKAP1	chr17	46423267	-	SP2	chr17	45992678	+
In-frame	ENST00000377298	ENST00000227135		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
In-frame	ENST00000377298	ENST00000532692		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
5CDS-3UTR	ENST00000377298	ENST00000524614		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
In-frame	ENST00000361311	ENST00000227135		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
In-frame	ENST00000361311	ENST00000532692		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
5CDS-3UTR	ENST00000361311	ENST00000524614		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
In-frame	ENST00000377288	ENST00000227135		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
In-frame	ENST00000377288	ENST00000532692		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
5CDS-3UTR	ENST00000377288	ENST00000524614		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
intron-3CDS	ENST00000477264	ENST00000227135		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
intron-3CDS	ENST00000477264	ENST00000532692		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
intron-3UTR	ENST00000477264	ENST00000524614		TCGA	LD	OV	TCGA-24-1550-01A	CLSTN1	chr1	9883701	-	SPA17	chr11	124561592	+
5UTR-5UTR	ENST00000427410	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000427410	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000427410	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000427410	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000427410	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000427410	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-intron	ENST00000427410	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000447388	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000447388	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000447388	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000447388	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000447388	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000447388	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-intron	ENST00000447388	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000425457	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000425457	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000425457	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000425457	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000425457	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000425457	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-intron	ENST00000425457	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000456393	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000456393	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000456393	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000456393	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000456393	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000456393	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-intron	ENST00000456393	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372654	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372654	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372654	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372654	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372654	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-5UTR	ENST00000372654	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
5UTR-intron	ENST00000372654	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372653	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372653	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372653	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372653	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372653	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372653	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000372653	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372652	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372652	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372652	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372652	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372652	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372652	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000372652	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372651	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372651	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372651	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372651	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372651	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000372651	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000372651	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000440226	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000440226	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000440226	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000440226	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000440226	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000440226	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000440226	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000308733	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000308733	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000308733	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000308733	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000308733	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000308733	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000308733	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000483091	ENST00000372797		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000483091	ENST00000372802		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000483091	ENST00000372792		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000483091	ENST00000372798		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000483091	ENST00000340450		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000483091	ENST00000372805		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000483091	ENST00000479759		TCGA	LD	OV	TCGA-24-1550-01A	NFYC	chr1	41157539	+	CAP1	chr1	40525009	+
intron-intron	ENST00000459937	ENST00000507606		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
intron-3UTR	ENST00000459937	ENST00000422968		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-intron	ENST00000424142	ENST00000507606		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-3UTR	ENST00000424142	ENST00000422968		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-intron	ENST00000393114	ENST00000507606		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-3UTR	ENST00000393114	ENST00000422968		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-intron	ENST00000430372	ENST00000507606		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-3UTR	ENST00000430372	ENST00000422968		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-intron	ENST00000483029	ENST00000507606		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
5CDS-3UTR	ENST00000483029	ENST00000422968		TCGA	LD	OV	TCGA-24-1551-01A	C7orf49	chr7	134852484	-	C7orf73	chr7	135373652	+
intron-3UTR	ENST00000423479	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000423479	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000423479	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000423479	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000423479	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608263	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608263	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608263	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608263	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608263	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000429804	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000429804	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000429804	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000429804	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000429804	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000609232	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000609232	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000609232	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000609232	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000609232	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000243914	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000243914	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000243914	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000243914	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000243914	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000371196	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000371196	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000371196	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000371196	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000371196	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608440	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608440	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608440	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608440	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608440	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000433949	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000433949	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000433949	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000433949	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000433949	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000502686	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000502686	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000502686	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000502686	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000502686	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000432255	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000432255	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000432255	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000432255	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000432255	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000539382	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000539382	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000539382	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000539382	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000539382	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608903	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608903	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608903	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608903	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608903	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608425	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608425	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608425	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608425	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608425	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000422869	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000422869	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000422869	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000422869	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000422869	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608858	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608858	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608858	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608858	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608858	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608158	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000608158	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608158	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608158	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000608158	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000481655	ENST00000396504		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-3UTR	ENST00000481655	ENST00000355209		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000481655	ENST00000337566		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000481655	ENST00000407461		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
intron-intron	ENST00000481655	ENST00000420561		TCGA	LD	OV	TCGA-24-1551-01A	CTCFL	chr20	56099259	-	POLR3H	chr22	41924830	-
Frame-shit	ENST00000249270	ENST00000356767		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000249270	ENST00000393735		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000249270	ENST00000339444		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000393730		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000306312		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000432958		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000354356		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000393729		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000393727		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000249270	ENST00000393723		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000379263	ENST00000356767		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000379263	ENST00000393735		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000379263	ENST00000339444		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000393730		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000306312		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000432958		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000354356		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000393729		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000393727		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000379263	ENST00000393723		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000412522	ENST00000356767		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000412522	ENST00000393735		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000412522	ENST00000339444		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000393730		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000306312		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000432958		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000354356		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000393729		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000393727		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
5CDS-intron	ENST00000412522	ENST00000393723		TCGA	LD	OV	TCGA-24-1551-01A	DNAJC2	chr7	102982211	-	SLC26A5	chr7	102993373	-
Frame-shit	ENST00000409581	ENST00000392328		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000409581	ENST00000281416		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000409581	ENST00000535751		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000409581	ENST00000489793		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000337386	ENST00000392328		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000337386	ENST00000281416		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000337386	ENST00000535751		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000337386	ENST00000489793		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000357215	ENST00000392328		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000357215	ENST00000281416		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000357215	ENST00000535751		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000357215	ENST00000489793		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000409641	ENST00000392328		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000409641	ENST00000281416		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000409641	ENST00000535751		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000409641	ENST00000489793		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000545490	ENST00000392328		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000545490	ENST00000281416		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
Frame-shit	ENST00000545490	ENST00000535751		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
5CDS-intron	ENST00000545490	ENST00000489793		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
intron-3CDS	ENST00000484774	ENST00000392328		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
intron-3CDS	ENST00000484774	ENST00000281416		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
intron-3CDS	ENST00000484774	ENST00000535751		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
intron-intron	ENST00000484774	ENST00000489793		TCGA	LD	OV	TCGA-24-1551-01A	NAB1	chr2	191537878	+	MFSD6	chr2	191353383	+
In-frame	ENST00000356462	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000356462	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-3UTR	ENST00000356462	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000400345	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000400345	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-3UTR	ENST00000400345	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
intron-3CDS	ENST00000589054	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
intron-3CDS	ENST00000589054	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
intron-3UTR	ENST00000589054	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000256832	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000256832	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3UTR	ENST00000256832	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000382850	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000382850	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-3UTR	ENST00000382850	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000256830	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000256830	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-3UTR	ENST00000256830	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
intron-3CDS	ENST00000588516	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
intron-3CDS	ENST00000588516	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
intron-3UTR	ENST00000588516	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000456986	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000456986	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3UTR	ENST00000456986	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000435432	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000435432	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3UTR	ENST00000435432	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000357895	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000357895	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-3UTR	ENST00000357895	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000586263	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
In-frame	ENST00000586263	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-3UTR	ENST00000586263	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000456173	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000456173	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3UTR	ENST00000456173	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000431212	ENST00000221543		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3CDS	ENST00000431212	ENST00000535102		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5UTR-3UTR	ENST00000431212	ENST00000598789		TCGA	LD	OV	TCGA-24-1551-01A	NEDD4L	chr18	55919286	+	TBC1D17	chr19	50381755	+
5CDS-5UTR	ENST00000522684	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000522684	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000535192	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000535192	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000519465	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000519465	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000517887	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000517887	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000521059	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000521059	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000395218	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000395218	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000538769	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000538769	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000340930	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000340930	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000519419	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000519419	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000430260	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
5CDS-5UTR	ENST00000430260	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000519881	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000519881	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000520892	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000520892	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000519635	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000519635	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000517712	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000517712	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000522950	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000522950	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000520151	ENST00000529064		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
intron-5UTR	ENST00000520151	ENST00000425753		TCGA	LD	OV	TCGA-24-1551-01A	PTK2	chr8	141684397	-	TSTA3	chr8	144698893	-
Frame-shit	ENST00000372692	ENST00000309971		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
Frame-shit	ENST00000372692	ENST00000372770		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000372692	ENST00000539582		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000372692	ENST00000494417		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000409104	ENST00000309971		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000409104	ENST00000372770		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000409104	ENST00000539582		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000409104	ENST00000494417		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000322030	ENST00000309971		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000322030	ENST00000372770		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000322030	ENST00000539582		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000322030	ENST00000494417		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000372688	ENST00000309971		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000372688	ENST00000372770		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000372688	ENST00000539582		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000372688	ENST00000494417		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000477806	ENST00000309971		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000477806	ENST00000372770		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000477806	ENST00000539582		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
intron-intron	ENST00000477806	ENST00000494417		TCGA	LD	OV	TCGA-24-1551-01A	SET	chr9	131446286	+	GLE1	chr9	131284947	+
Frame-shit	ENST00000373202	ENST00000373207		TCGA	LD	OV	TCGA-24-1551-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72492010	+
Frame-shit	ENST00000373202	ENST00000373208		TCGA	LD	OV	TCGA-24-1551-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72492010	+
3UTR-3CDS	ENST00000486993	ENST00000373207		TCGA	LD	OV	TCGA-24-1551-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72492010	+
3UTR-3CDS	ENST00000486993	ENST00000373208		TCGA	LD	OV	TCGA-24-1551-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72492010	+
In-frame	ENST00000291574	ENST00000497547		TCGA	LD	OV	TCGA-24-1551-01A	TRAPPC10	chr21	45432441	+	RRP1	chr21	45211231	+
5CDS-intron	ENST00000291574	ENST00000471909		TCGA	LD	OV	TCGA-24-1551-01A	TRAPPC10	chr21	45432441	+	RRP1	chr21	45211231	+
In-frame	ENST00000380221	ENST00000497547		TCGA	LD	OV	TCGA-24-1551-01A	TRAPPC10	chr21	45432441	+	RRP1	chr21	45211231	+
5CDS-intron	ENST00000380221	ENST00000471909		TCGA	LD	OV	TCGA-24-1551-01A	TRAPPC10	chr21	45432441	+	RRP1	chr21	45211231	+
intron-3CDS	ENST00000483973	ENST00000497547		TCGA	LD	OV	TCGA-24-1551-01A	TRAPPC10	chr21	45432441	+	RRP1	chr21	45211231	+
intron-intron	ENST00000483973	ENST00000471909		TCGA	LD	OV	TCGA-24-1551-01A	TRAPPC10	chr21	45432441	+	RRP1	chr21	45211231	+
5UTR-3CDS	ENST00000373652	ENST00000306107		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5UTR-3CDS	ENST00000373652	ENST00000472644		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5UTR-intron	ENST00000373652	ENST00000481337		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5UTR-intron	ENST00000373652	ENST00000486979		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5UTR-intron	ENST00000373652	ENST00000389927		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
Frame-shit	ENST00000283946	ENST00000306107		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
Frame-shit	ENST00000283946	ENST00000472644		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5CDS-intron	ENST00000283946	ENST00000481337		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5CDS-intron	ENST00000283946	ENST00000486979		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5CDS-intron	ENST00000283946	ENST00000389927		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
Frame-shit	ENST00000409992	ENST00000306107		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
Frame-shit	ENST00000409992	ENST00000472644		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5CDS-intron	ENST00000409992	ENST00000481337		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5CDS-intron	ENST00000409992	ENST00000486979		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
5CDS-intron	ENST00000409992	ENST00000389927		TCGA	LD	OV	TCGA-24-1552-01A	FBXO36	chr2	230787322	+	ALCAM	chr3	105290693	+
intron-3CDS	ENST00000446823	ENST00000295640		TCGA	LD	OV	TCGA-24-1553-01A	FOXK1	chr7	4722499	+	RNPEP	chr1	201958032	+
intron-3CDS	ENST00000446823	ENST00000367286		TCGA	LD	OV	TCGA-24-1553-01A	FOXK1	chr7	4722499	+	RNPEP	chr1	201958032	+
intron-3UTR	ENST00000446823	ENST00000471105		TCGA	LD	OV	TCGA-24-1553-01A	FOXK1	chr7	4722499	+	RNPEP	chr1	201958032	+
Frame-shit	ENST00000328914	ENST00000295640		TCGA	LD	OV	TCGA-24-1553-01A	FOXK1	chr7	4722499	+	RNPEP	chr1	201958032	+
Frame-shit	ENST00000328914	ENST00000367286		TCGA	LD	OV	TCGA-24-1553-01A	FOXK1	chr7	4722499	+	RNPEP	chr1	201958032	+
5CDS-3UTR	ENST00000328914	ENST00000471105		TCGA	LD	OV	TCGA-24-1553-01A	FOXK1	chr7	4722499	+	RNPEP	chr1	201958032	+
Frame-shit	ENST00000368321	ENST00000361813		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
Frame-shit	ENST00000368321	ENST00000368267		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
5CDS-intron	ENST00000368321	ENST00000489907		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
Frame-shit	ENST00000368320	ENST00000361813		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
Frame-shit	ENST00000368320	ENST00000368267		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
5CDS-intron	ENST00000368320	ENST00000489907		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
Frame-shit	ENST00000368319	ENST00000361813		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
Frame-shit	ENST00000368319	ENST00000368267		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
5CDS-intron	ENST00000368319	ENST00000489907		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
5UTR-3CDS	ENST00000482337	ENST00000361813		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
5UTR-3CDS	ENST00000482337	ENST00000368267		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
5UTR-intron	ENST00000482337	ENST00000489907		TCGA	LD	OV	TCGA-24-1553-01A	KIAA0907	chr1	155903424	-	SMG5	chr1	156242189	-
Frame-shit	ENST00000332830	ENST00000585892		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000332830	ENST00000314646		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000332830	ENST00000359692		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000332830	ENST00000389253		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000332830	ENST00000355667		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000332830	ENST00000408974		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5CDS-3UTR	ENST00000332830	ENST00000591819		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000577226	ENST00000585892		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000577226	ENST00000314646		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000577226	ENST00000359692		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000577226	ENST00000389253		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000577226	ENST00000355667		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000577226	ENST00000408974		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5CDS-3UTR	ENST00000577226	ENST00000591819		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000268756	ENST00000585892		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000268756	ENST00000314646		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000268756	ENST00000359692		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000268756	ENST00000389253		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000268756	ENST00000355667		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
Frame-shit	ENST00000268756	ENST00000408974		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5CDS-3UTR	ENST00000268756	ENST00000591819		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000582655	ENST00000585892		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000582655	ENST00000314646		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000582655	ENST00000359692		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000582655	ENST00000389253		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000582655	ENST00000355667		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3CDS	ENST00000582655	ENST00000408974		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
5UTR-3UTR	ENST00000582655	ENST00000591819		TCGA	LD	OV	TCGA-24-1553-01A	PHF12	chr17	27240897	-	DNM2	chr19	10883155	+
intron-3CDS	ENST00000485752	ENST00000425019		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-3CDS	ENST00000485752	ENST00000324219		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-3CDS	ENST00000485752	ENST00000350198		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-3CDS	ENST00000485752	ENST00000302217		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-3CDS	ENST00000485752	ENST00000413150		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-3CDS	ENST00000485752	ENST00000347699		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-3CDS	ENST00000485752	ENST00000456652		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-intron	ENST00000485752	ENST00000350878		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
intron-intron	ENST00000485752	ENST00000498066		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000425019		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000324219		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000350198		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000302217		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000413150		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000347699		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
In-frame	ENST00000295317	ENST00000456652		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
5CDS-intron	ENST00000295317	ENST00000350878		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
5CDS-intron	ENST00000295317	ENST00000498066		TCGA	LD	OV	TCGA-24-1553-01A	RNF149	chr2	101910476	-	MAP4K4	chr2	102407182	+
Frame-shit	ENST00000287218	ENST00000400454		TCGA	LD	OV	TCGA-24-1553-01A	ZFAND3	chr6	37787792	+	DSCAM	chr21	41741172	-
Frame-shit	ENST00000373391	ENST00000400454		TCGA	LD	OV	TCGA-24-1553-01A	ZFAND3	chr6	37787792	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000463847	ENST00000400454		TCGA	LD	OV	TCGA-24-1553-01A	ZFAND3	chr6	37787792	+	DSCAM	chr21	41741172	-
Frame-shit	ENST00000319540	ENST00000311507		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
Frame-shit	ENST00000319540	ENST00000411416		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-intron	ENST00000319540	ENST00000515389		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000319540	ENST00000509973		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000319540	ENST00000505406		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000319540	ENST00000426923		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
Frame-shit	ENST00000273908	ENST00000311507		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
Frame-shit	ENST00000273908	ENST00000411416		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-intron	ENST00000273908	ENST00000515389		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000273908	ENST00000509973		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000273908	ENST00000505406		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000273908	ENST00000426923		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
Frame-shit	ENST00000282709	ENST00000311507		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
Frame-shit	ENST00000282709	ENST00000411416		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-intron	ENST00000282709	ENST00000515389		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000282709	ENST00000509973		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000282709	ENST00000505406		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000282709	ENST00000426923		TCGA	LD	OV	TCGA-24-1555-01A	SCD5	chr4	83719459	-	PLAC8	chr4	84026173	-
5CDS-5UTR	ENST00000383836	ENST00000316793		TCGA	LD	OV	TCGA-24-1555-01A	SRGAP3	chr3	9290569	-	OXTR	chr3	8810277	-
5CDS-5UTR	ENST00000360413	ENST00000316793		TCGA	LD	OV	TCGA-24-1555-01A	SRGAP3	chr3	9290569	-	OXTR	chr3	8810277	-
intron-5UTR	ENST00000433332	ENST00000316793		TCGA	LD	OV	TCGA-24-1555-01A	SRGAP3	chr3	9290569	-	OXTR	chr3	8810277	-
intron-3CDS	ENST00000520309	ENST00000607062		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000520309	ENST00000260952		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000520309	ENST00000607535		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000520309	ENST00000607690		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000520309	ENST00000607829		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000313581	ENST00000607062		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000313581	ENST00000260952		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000313581	ENST00000607535		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000313581	ENST00000607690		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000313581	ENST00000607829		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000281412	ENST00000607062		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000281412	ENST00000260952		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000281412	ENST00000607535		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000281412	ENST00000607690		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000281412	ENST00000607829		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000438402	ENST00000607062		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000438402	ENST00000260952		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000438402	ENST00000607535		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000438402	ENST00000607690		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000438402	ENST00000607829		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000431575	ENST00000607062		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-3CDS	ENST00000431575	ENST00000260952		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000431575	ENST00000607535		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000431575	ENST00000607690		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
intron-intron	ENST00000431575	ENST00000607829		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
3UTR-3CDS	ENST00000461516	ENST00000607062		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
3UTR-3CDS	ENST00000461516	ENST00000260952		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
3UTR-intron	ENST00000461516	ENST00000607535		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
3UTR-intron	ENST00000461516	ENST00000607690		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
3UTR-intron	ENST00000461516	ENST00000607829		TCGA	LD	OV	TCGA-24-1556-01A	ANKAR	chr2	190539556	+	ASNSD1	chr2	190535167	+
In-frame	ENST00000545844	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000545844	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000545844	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000567887	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000567887	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000567887	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000372915	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000372915	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000372915	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000361689	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000361689	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000361689	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000539005	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000539005	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000539005	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000317713	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000317713	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000317713	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000564288	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000564288	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000564288	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000289893	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000289893	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
In-frame	ENST00000289893	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000536367	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000536367	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000536367	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000484793	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000484793	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000484793	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000602421	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000602421	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000602421	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000476350	ENST00000330687		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000476350	ENST00000394106		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
intron-3CDS	ENST00000476350	ENST00000563952		TCGA	LD	OV	TCGA-24-1556-01A	MACF1	chr1	39854330	+	CMTM4	chr16	66670484	-
Frame-shit	ENST00000394249	ENST00000333371		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000394249	ENST00000535843		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000394249	ENST00000535906		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
5CDS-intron	ENST00000394249	ENST00000557358		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000361919	ENST00000333371		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000361919	ENST00000535843		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000361919	ENST00000535906		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
5CDS-intron	ENST00000361919	ENST00000557358		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000361188	ENST00000333371		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000361188	ENST00000535843		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000361188	ENST00000535906		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
5CDS-intron	ENST00000361188	ENST00000557358		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000442656	ENST00000333371		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000442656	ENST00000535843		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
Frame-shit	ENST00000442656	ENST00000535906		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
5CDS-intron	ENST00000442656	ENST00000557358		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
intron-3CDS	ENST00000556129	ENST00000333371		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
intron-3CDS	ENST00000556129	ENST00000535843		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
intron-3CDS	ENST00000556129	ENST00000535906		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
intron-intron	ENST00000556129	ENST00000557358		TCGA	LD	OV	TCGA-24-1556-01A	PRC1	chr15	91523472	-	VPS33B	chr15	91542284	-
In-frame	ENST00000340353	ENST00000382172		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
5CDS-intron	ENST00000340353	ENST00000469167		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
intron-3CDS	ENST00000532959	ENST00000382172		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
intron-intron	ENST00000532959	ENST00000469167		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
In-frame	ENST00000305494	ENST00000382172		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
5CDS-intron	ENST00000305494	ENST00000469167		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
5UTR-3CDS	ENST00000535167	ENST00000382172		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
5UTR-intron	ENST00000535167	ENST00000469167		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
In-frame	ENST00000355734	ENST00000382172		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
5CDS-intron	ENST00000355734	ENST00000469167		TCGA	LD	OV	TCGA-24-1556-01A	TMEM135	chr11	86749228	+	MIPEP	chr13	24304584	-
5UTR-3CDS	ENST00000383440	ENST00000580170		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000383440	ENST00000332175		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000383440	ENST00000400060		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000383440	ENST00000400053		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000383440	ENST00000444013		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-intron	ENST00000383440	ENST00000578571		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000262126	ENST00000580170		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000262126	ENST00000332175		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000262126	ENST00000400060		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000262126	ENST00000400053		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000262126	ENST00000444013		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-intron	ENST00000262126	ENST00000578571		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
3UTR-3CDS	ENST00000540578	ENST00000580170		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
3UTR-3CDS	ENST00000540578	ENST00000332175		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
3UTR-3CDS	ENST00000540578	ENST00000400060		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
3UTR-3CDS	ENST00000540578	ENST00000400053		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
3UTR-3CDS	ENST00000540578	ENST00000444013		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
3UTR-intron	ENST00000540578	ENST00000578571		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
intron-3CDS	ENST00000400020	ENST00000580170		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
intron-3CDS	ENST00000400020	ENST00000332175		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
intron-3CDS	ENST00000400020	ENST00000400060		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
intron-3CDS	ENST00000400020	ENST00000400053		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
intron-3CDS	ENST00000400020	ENST00000444013		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
intron-intron	ENST00000400020	ENST00000578571		TCGA	LD	OV	TCGA-24-1557-01A	ANKRD12	chr18	9136963	+	PTPRM	chr18	8296366	+
5UTR-3CDS	ENST00000334746	ENST00000443584		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3CDS	ENST00000334746	ENST00000449996		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3CDS	ENST00000334746	ENST00000262406		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3UTR	ENST00000334746	ENST00000577186		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
In-frame	ENST00000554565	ENST00000443584		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
In-frame	ENST00000554565	ENST00000449996		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
In-frame	ENST00000554565	ENST00000262406		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5CDS-3UTR	ENST00000554565	ENST00000577186		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3CDS	ENST00000393170	ENST00000443584		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3CDS	ENST00000393170	ENST00000449996		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3CDS	ENST00000393170	ENST00000262406		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3UTR	ENST00000393170	ENST00000577186		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3CDS	ENST00000298896	ENST00000443584		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3CDS	ENST00000298896	ENST00000449996		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3CDS	ENST00000298896	ENST00000262406		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
5UTR-3UTR	ENST00000298896	ENST00000577186		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3CDS	ENST00000555525	ENST00000443584		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3CDS	ENST00000555525	ENST00000449996		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3CDS	ENST00000555525	ENST00000262406		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
intron-3UTR	ENST00000555525	ENST00000577186		TCGA	LD	OV	TCGA-24-1557-01A	BTBD7	chr14	93799166	-	RGS9	chr17	63149540	+
In-frame	ENST00000398810	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000398810	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000398810	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000398810	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
In-frame	ENST00000439599	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000439599	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000439599	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000439599	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
In-frame	ENST00000398812	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000398812	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000398812	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000398812	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
Frame-shit	ENST00000335866	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000335866	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000335866	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000335866	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
In-frame	ENST00000402578	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000402578	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000402578	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000402578	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
Frame-shit	ENST00000403097	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000403097	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000403097	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000403097	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
Frame-shit	ENST00000406641	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000406641	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000406641	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000406641	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
In-frame	ENST00000357271	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000357271	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000357271	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000357271	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
Frame-shit	ENST00000407526	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000407526	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000407526	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000407526	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
Frame-shit	ENST00000401949	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000401949	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000401949	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000401949	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
Frame-shit	ENST00000402497	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000402497	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000402497	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-3UTR	ENST00000402497	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
intron-3CDS	ENST00000483819	ENST00000297029		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
intron-5UTR	ENST00000483819	ENST00000519209		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
intron-5UTR	ENST00000483819	ENST00000445618		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
intron-3UTR	ENST00000483819	ENST00000473722		TCGA	LD	OV	TCGA-24-1557-01A	GRB10	chr7	50737419	-	SCIN	chr7	12662426	+
5CDS-5UTR	ENST00000579662	ENST00000556126		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000579662	ENST00000579469		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000339591	ENST00000556126		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000339591	ENST00000579469		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000200181	ENST00000556126		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000200181	ENST00000579469		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000450894	ENST00000556126		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000450894	ENST00000579469		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000449880	ENST00000556126		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000449880	ENST00000579469		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
3UTR-5UTR	ENST00000584558	ENST00000556126		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
3UTR-5UTR	ENST00000584558	ENST00000579469		TCGA	LD	OV	TCGA-24-1557-01A	ITGB4	chr17	73720862	+	SMIM6	chr17	73642735	+
In-frame	ENST00000239690	ENST00000379310		TCGA	LD	OV	TCGA-24-1557-01A	NUDCD1	chr8	110283234	-	VWA8	chr13	42189220	-
5CDS-intron	ENST00000239690	ENST00000281496		TCGA	LD	OV	TCGA-24-1557-01A	NUDCD1	chr8	110283234	-	VWA8	chr13	42189220	-
5CDS-intron	ENST00000239690	ENST00000478987		TCGA	LD	OV	TCGA-24-1557-01A	NUDCD1	chr8	110283234	-	VWA8	chr13	42189220	-
In-frame	ENST00000427660	ENST00000379310		TCGA	LD	OV	TCGA-24-1557-01A	NUDCD1	chr8	110283234	-	VWA8	chr13	42189220	-
5CDS-intron	ENST00000427660	ENST00000281496		TCGA	LD	OV	TCGA-24-1557-01A	NUDCD1	chr8	110283234	-	VWA8	chr13	42189220	-
5CDS-intron	ENST00000427660	ENST00000478987		TCGA	LD	OV	TCGA-24-1557-01A	NUDCD1	chr8	110283234	-	VWA8	chr13	42189220	-
intron-3CDS	ENST00000452015	ENST00000405093		TCGA	LD	OV	TCGA-24-1557-01A	PPP1R3E	chr14	23765965	-	MYH6	chr14	23874031	-
intron-3CDS	ENST00000452015	ENST00000356287		TCGA	LD	OV	TCGA-24-1557-01A	PPP1R3E	chr14	23765965	-	MYH6	chr14	23874031	-
5UTR-3CDS	ENST00000561426	ENST00000405093		TCGA	LD	OV	TCGA-24-1557-01A	PPP1R3E	chr14	23765965	-	MYH6	chr14	23874031	-
5UTR-3CDS	ENST00000561426	ENST00000356287		TCGA	LD	OV	TCGA-24-1557-01A	PPP1R3E	chr14	23765965	-	MYH6	chr14	23874031	-
In-frame	ENST00000372771	ENST00000372811		TCGA	LD	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000372771	ENST00000420632		TCGA	LD	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000372771	ENST00000372809		TCGA	LD	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40422759	+
5CDS-intron	ENST00000372771	ENST00000480630		TCGA	LD	OV	TCGA-24-1557-01A	RLF	chr1	40627308	+	MFSD2A	chr1	40422759	+
intron-3CDS	ENST00000539317	ENST00000372797		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000539317	ENST00000372802		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000539317	ENST00000372792		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000539317	ENST00000372798		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000539317	ENST00000340450		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000539317	ENST00000372805		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-intron	ENST00000539317	ENST00000479759		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000487871	ENST00000372797		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000487871	ENST00000372802		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000487871	ENST00000372792		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000487871	ENST00000372798		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000487871	ENST00000340450		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-3CDS	ENST00000487871	ENST00000372805		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
intron-intron	ENST00000487871	ENST00000479759		TCGA	LD	OV	TCGA-24-1557-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40527407	+
In-frame	ENST00000565677	ENST00000315082		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
5CDS-intron	ENST00000565677	ENST00000569943		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
In-frame	ENST00000219548	ENST00000315082		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
5CDS-intron	ENST00000219548	ENST00000569943		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
In-frame	ENST00000564370	ENST00000315082		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
5CDS-intron	ENST00000564370	ENST00000569943		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
3UTR-3CDS	ENST00000566181	ENST00000315082		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
3UTR-intron	ENST00000566181	ENST00000569943		TCGA	LD	OV	TCGA-24-1557-01A	STUB1	chr16	731603	+	RHOT2	chr16	722084	+
5UTR-5UTR	ENST00000462705	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000462705	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000462705	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000462705	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000462705	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-intron	ENST00000462705	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000393785	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000393785	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000393785	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000393785	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000393785	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-intron	ENST00000393785	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000481632	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000481632	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000481632	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000481632	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000481632	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-intron	ENST00000481632	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000471418	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000471418	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000471418	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000471418	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000471418	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-intron	ENST00000471418	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000357258	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000357258	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000357258	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000357258	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000357258	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-intron	ENST00000357258	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000464560	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000464560	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000464560	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000464560	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000464560	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-intron	ENST00000464560	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000488663	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000488663	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000488663	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000488663	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-5UTR	ENST00000488663	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
5UTR-intron	ENST00000488663	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000474710	ENST00000512055		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000474710	ENST00000429747		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000474710	ENST00000512332		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000474710	ENST00000511604		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-5UTR	ENST00000474710	ENST00000502818		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-intron	ENST00000474710	ENST00000503204		TCGA	LD	OV	TCGA-24-1557-01A	ZBTB20	chr3	114619151	-	CPNE4	chr3	131624288	-
intron-3CDS	ENST00000354775	ENST00000392129		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
intron-3CDS	ENST00000354775	ENST00000367881		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
intron-3CDS	ENST00000354775	ENST00000580248		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
intron-3CDS	ENST00000354775	ENST00000464650		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000538148	ENST00000392129		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000538148	ENST00000367881		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000538148	ENST00000580248		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000538148	ENST00000464650		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000461664	ENST00000392129		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000461664	ENST00000367881		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000461664	ENST00000580248		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000461664	ENST00000464650		TCGA	LD	OV	TCGA-24-1558-01A	ALDH9A1	chr1	165667487	-	TMCO1	chr1	165697358	-
5UTR-3CDS	ENST00000396560	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396560	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396560	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396560	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396560	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396560	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-intron	ENST00000396560	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396559	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396559	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396559	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396559	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396559	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000396559	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-intron	ENST00000396559	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-3CDS	ENST00000561932	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-3CDS	ENST00000561932	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-3CDS	ENST00000561932	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-3CDS	ENST00000561932	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-3CDS	ENST00000561932	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-3CDS	ENST00000561932	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
3UTR-intron	ENST00000561932	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000543967	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000543967	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000543967	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000543967	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000543967	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000543967	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5UTR-intron	ENST00000543967	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000356427	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000356427	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000356427	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000356427	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000356427	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000356427	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-intron	ENST00000356427	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000324570	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000324570	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000324570	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000324570	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000324570	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-3CDS	ENST00000324570	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
intron-intron	ENST00000324570	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	ATF7IP2	chr16	10479979	+	STYXL1	chr7	75634722	-
5CDS-5UTR	ENST00000253669	ENST00000588267		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000253669	ENST00000592859		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000253669	ENST00000586293		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000253669	ENST00000397902		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000253669	ENST00000589038		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-5UTR	ENST00000448593	ENST00000588267		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000448593	ENST00000592859		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000448593	ENST00000586293		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000448593	ENST00000397902		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000448593	ENST00000589038		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-5UTR	ENST00000593360	ENST00000588267		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000593360	ENST00000592859		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000593360	ENST00000586293		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000593360	ENST00000397902		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
5CDS-intron	ENST00000593360	ENST00000589038		TCGA	LD	OV	TCGA-24-1558-01A	HAUS8	chr19	17166671	-	ZNF846	chr19	9872844	-
In-frame	ENST00000336926	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000336926	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000336926	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000336926	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000336926	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000336926	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5CDS-intron	ENST00000336926	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000434438	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000434438	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000434438	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000434438	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000434438	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
In-frame	ENST00000434438	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5CDS-intron	ENST00000434438	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000479835	ENST00000248600		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000479835	ENST00000359697		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000479835	ENST00000340062		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000479835	ENST00000360591		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000479835	ENST00000431581		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-3CDS	ENST00000479835	ENST00000451157		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
5UTR-intron	ENST00000479835	ENST00000460184		TCGA	LD	OV	TCGA-24-1558-01A	HIP1	chr7	75368119	-	STYXL1	chr7	75634722	-
Frame-shit	ENST00000263063	ENST00000302708		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000263063	ENST00000378840		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000263063	ENST00000532410		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000358107	ENST00000302708		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000358107	ENST00000378840		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000358107	ENST00000532410		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5UTR-3CDS	ENST00000488290	ENST00000302708		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5UTR-intron	ENST00000488290	ENST00000378840		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5UTR-3UTR	ENST00000488290	ENST00000532410		TCGA	LD	OV	TCGA-24-1558-01A	MTPAP	chr10	30611320	-	ALKBH3	chr11	43940588	+
5CDS-5UTR	ENST00000339082	ENST00000598188		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000339082	ENST00000359435		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000339082	ENST00000447614		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000339082	ENST00000601043		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000339082	ENST00000448635		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000339082	ENST00000595632		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000601723	ENST00000598188		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000601723	ENST00000359435		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000601723	ENST00000447614		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000601723	ENST00000601043		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000601723	ENST00000448635		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000601723	ENST00000595632		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000340093	ENST00000598188		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000340093	ENST00000359435		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000340093	ENST00000447614		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000340093	ENST00000601043		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000340093	ENST00000448635		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000340093	ENST00000595632		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000221264	ENST00000598188		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-5UTR	ENST00000221264	ENST00000359435		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000221264	ENST00000447614		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000221264	ENST00000601043		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000221264	ENST00000448635		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
5CDS-intron	ENST00000221264	ENST00000595632		TCGA	LD	OV	TCGA-24-1558-01A	PLAUR	chr19	44174218	-	BABAM1	chr19	17378211	+
Frame-shit	ENST00000409419	ENST00000221972		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409419	ENST00000444740		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409587	ENST00000221972		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409587	ENST00000444740		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
intron-3CDS	ENST00000594085	ENST00000221972		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
intron-3CDS	ENST00000594085	ENST00000444740		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409735	ENST00000221972		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409735	ENST00000444740		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000356508	ENST00000221972		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000356508	ENST00000444740		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409281	ENST00000221972		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
Frame-shit	ENST00000409281	ENST00000444740		TCGA	LD	OV	TCGA-24-1558-01A	PLD3	chr19	40873786	+	CD79A	chr19	42383060	+
5CDS-5UTR	ENST00000421905	ENST00000262890		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	PAFAH1B3	chr19	42806477	-
5CDS-5UTR	ENST00000421905	ENST00000538771		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	PAFAH1B3	chr19	42806477	-
5CDS-5UTR	ENST00000221462	ENST00000262890		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	PAFAH1B3	chr19	42806477	-
5CDS-5UTR	ENST00000221462	ENST00000538771		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	PAFAH1B3	chr19	42806477	-
3UTR-5UTR	ENST00000496125	ENST00000262890		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	PAFAH1B3	chr19	42806477	-
3UTR-5UTR	ENST00000496125	ENST00000538771		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	PAFAH1B3	chr19	42806477	-
Frame-shit	ENST00000421905	ENST00000254260		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
5CDS-5UTR	ENST00000421905	ENST00000400226		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
5CDS-intron	ENST00000421905	ENST00000588683		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
Frame-shit	ENST00000221462	ENST00000254260		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
5CDS-5UTR	ENST00000221462	ENST00000400226		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
5CDS-intron	ENST00000221462	ENST00000588683		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
3UTR-3CDS	ENST00000496125	ENST00000254260		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
3UTR-5UTR	ENST00000496125	ENST00000400226		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
3UTR-intron	ENST00000496125	ENST00000588683		TCGA	LD	OV	TCGA-24-1558-01A	PPP1R37	chr19	45596785	+	RHPN2	chr19	33535270	-
intron-3CDS	ENST00000360605	ENST00000594374		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	L34079.2	chr19	44065172	-
Frame-shit	ENST00000542441	ENST00000594374		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	L34079.2	chr19	44065172	-
5UTR-3CDS	ENST00000392271	ENST00000594374		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	L34079.2	chr19	44065172	-
Frame-shit	ENST00000312051	ENST00000594374		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	L34079.2	chr19	44065172	-
intron-3CDS	ENST00000574176	ENST00000594374		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	L34079.2	chr19	44065172	-
intron-3CDS	ENST00000360605	ENST00000262887		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
intron-3CDS	ENST00000360605	ENST00000543982		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
In-frame	ENST00000542441	ENST00000262887		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
In-frame	ENST00000542441	ENST00000543982		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
5UTR-3CDS	ENST00000392271	ENST00000262887		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
5UTR-3CDS	ENST00000392271	ENST00000543982		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
Frame-shit	ENST00000312051	ENST00000262887		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
Frame-shit	ENST00000312051	ENST00000543982		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
intron-3CDS	ENST00000574176	ENST00000262887		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
intron-3CDS	ENST00000574176	ENST00000543982		TCGA	LD	OV	TCGA-24-1558-01A	URI1	chr19	30433571	+	XRCC1	chr19	44065172	-
In-frame	ENST00000600335	ENST00000397661		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000600335	ENST00000592199		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000600335	ENST00000587760		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000600335	ENST00000585575		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000600335	ENST00000360105		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000600335	ENST00000588228		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000600335	ENST00000587260		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000600335	ENST00000358552		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-intron	ENST00000600335	ENST00000588680		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000334213	ENST00000397661		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000334213	ENST00000592199		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000334213	ENST00000587760		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000334213	ENST00000585575		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
In-frame	ENST00000334213	ENST00000360105		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000334213	ENST00000588228		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000334213	ENST00000587260		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000334213	ENST00000358552		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
5CDS-intron	ENST00000334213	ENST00000588680		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000485451	ENST00000397661		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000485451	ENST00000592199		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000485451	ENST00000587760		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000485451	ENST00000585575		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-3CDS	ENST00000485451	ENST00000360105		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-5UTR	ENST00000485451	ENST00000588228		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-5UTR	ENST00000485451	ENST00000587260		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-5UTR	ENST00000485451	ENST00000358552		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
intron-intron	ENST00000485451	ENST00000588680		TCGA	LD	OV	TCGA-24-1558-01A	ZNF20	chr19	12250995	-	NFIX	chr19	13135835	+
Frame-shit	ENST00000355202	ENST00000408912		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000355202	ENST00000457010		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000355202	ENST00000563544		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000355202	ENST00000538189		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000355202	ENST00000268314		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
5CDS-5UTR	ENST00000355202	ENST00000412665		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000395835	ENST00000408912		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000395835	ENST00000457010		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000395835	ENST00000563544		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000395835	ENST00000538189		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
Frame-shit	ENST00000395835	ENST00000268314		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
5CDS-5UTR	ENST00000395835	ENST00000412665		TCGA	LD	OV	TCGA-24-1558-01A	ZNF607	chr19	38198815	-	ARMC5	chr16	31473243	+
5CDS-5UTR	ENST00000254323	ENST00000253680		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-5UTR	ENST00000254323	ENST00000397372		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-5UTR	ENST00000254323	ENST00000593154		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-intron	ENST00000254323	ENST00000588246		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-5UTR	ENST00000440752	ENST00000253680		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-5UTR	ENST00000440752	ENST00000397372		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-5UTR	ENST00000440752	ENST00000593154		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-intron	ENST00000440752	ENST00000588246		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13941843	+	HSH2D	chr19	16254442	+
5CDS-5UTR	ENST00000254323	ENST00000592533		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5CDS-5UTR	ENST00000254323	ENST00000589117		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5CDS-3UTR	ENST00000254323	ENST00000587220		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5CDS-5UTR	ENST00000254323	ENST00000316433		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5CDS-5UTR	ENST00000254323	ENST00000586792		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5CDS-5UTR	ENST00000254323	ENST00000343599		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5UTR-5UTR	ENST00000440752	ENST00000592533		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5UTR-5UTR	ENST00000440752	ENST00000589117		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5UTR-3UTR	ENST00000440752	ENST00000587220		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5UTR-5UTR	ENST00000440752	ENST00000316433		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5UTR-5UTR	ENST00000440752	ENST00000586792		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
5UTR-5UTR	ENST00000440752	ENST00000343599		TCGA	LD	OV	TCGA-24-1558-01A	ZSWIM4	chr19	13915962	+	ZNF540	chr19	38089277	+
Frame-shit	ENST00000436648	ENST00000399609		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000436648	ENST00000537996		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000321919	ENST00000399609		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000321919	ENST00000537996		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000381983	ENST00000399609		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000381983	ENST00000537996		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000591451	ENST00000399609		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000591451	ENST00000537996		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
intron-3CDS	ENST00000586901	ENST00000399609		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
intron-3CDS	ENST00000586901	ENST00000537996		TCGA	LD	OV	TCGA-24-1560-01A	GLYR1	chr16	4895075	-	SRL	chr16	4245787	-
Frame-shit	ENST00000260197	ENST00000529397		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000260197	ENST00000422003		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000532451	ENST00000529397		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000532451	ENST00000422003		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000525532	ENST00000529397		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000525532	ENST00000422003		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000532694	ENST00000529397		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000532694	ENST00000422003		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000534286	ENST00000529397		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000534286	ENST00000422003		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000527934	ENST00000529397		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000527934	ENST00000422003		TCGA	LD	OV	TCGA-24-1560-01A	SORL1	chr11	121498476	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000360265	ENST00000382148		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000360265	ENST00000447367		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000360265	ENST00000382150		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000360265	ENST00000382152		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
In-frame	ENST00000360265	ENST00000509207		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000360265	ENST00000382149		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000360265	ENST00000359001		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000358461	ENST00000382148		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000358461	ENST00000447367		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000358461	ENST00000382150		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000358461	ENST00000382152		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
In-frame	ENST00000358461	ENST00000509207		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000358461	ENST00000382149		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000358461	ENST00000359001		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000420658	ENST00000382148		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000420658	ENST00000447367		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000420658	ENST00000382150		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000420658	ENST00000382152		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
In-frame	ENST00000420658	ENST00000509207		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000420658	ENST00000382149		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000420658	ENST00000359001		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000382543	ENST00000382148		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000382543	ENST00000447367		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000382543	ENST00000382150		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
Frame-shit	ENST00000382543	ENST00000382152		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
In-frame	ENST00000382543	ENST00000509207		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000382543	ENST00000382149		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5CDS-5UTR	ENST00000382543	ENST00000359001		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-3CDS	ENST00000513842	ENST00000382148		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-3CDS	ENST00000513842	ENST00000447367		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-3CDS	ENST00000513842	ENST00000382150		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-3CDS	ENST00000513842	ENST00000382152		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-3CDS	ENST00000513842	ENST00000509207		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-5UTR	ENST00000513842	ENST00000382149		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
5UTR-5UTR	ENST00000513842	ENST00000359001		TCGA	LD	OV	TCGA-24-1562-01A	AFAP1	chr4	7787921	-	KCNIP4	chr4	20731752	-
In-frame	ENST00000262367	ENST00000399609		TCGA	LD	OV	TCGA-24-1562-01A	CREBBP	chr16	3794895	-	SRL	chr16	4254635	-
5CDS-5UTR	ENST00000262367	ENST00000537996		TCGA	LD	OV	TCGA-24-1562-01A	CREBBP	chr16	3794895	-	SRL	chr16	4254635	-
In-frame	ENST00000382070	ENST00000399609		TCGA	LD	OV	TCGA-24-1562-01A	CREBBP	chr16	3794895	-	SRL	chr16	4254635	-
5CDS-5UTR	ENST00000382070	ENST00000537996		TCGA	LD	OV	TCGA-24-1562-01A	CREBBP	chr16	3794895	-	SRL	chr16	4254635	-
5CDS-intron	ENST00000326793	ENST00000466753		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
5CDS-intron	ENST00000326793	ENST00000449683		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
5CDS-intron	ENST00000326793	ENST00000359832		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
5CDS-intron	ENST00000326793	ENST00000292475		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
5CDS-intron	ENST00000326793	ENST00000544611		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
5CDS-intron	ENST00000326793	ENST00000488775		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
5CDS-intron	ENST00000326793	ENST00000394186		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000466753		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000449683		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000359832		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000292475		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000544611		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000488775		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000472860	ENST00000394186		TCGA	LD	OV	TCGA-24-1563-01A	ACAP2	chr3	195006525	-	ATP5J2	chr7	99057816	-
intron-intron	ENST00000355327	ENST00000398840		TCGA	LD	OV	TCGA-24-1563-01A	THSD4	chr15	71839820	+	NR2E3	chr15	72099357	+
intron-intron	ENST00000261862	ENST00000398840		TCGA	LD	OV	TCGA-24-1563-01A	THSD4	chr15	71839820	+	NR2E3	chr15	72099357	+
5CDS-intron	ENST00000357769	ENST00000398840		TCGA	LD	OV	TCGA-24-1563-01A	THSD4	chr15	71839820	+	NR2E3	chr15	72099357	+
intron-intron	ENST00000567838	ENST00000398840		TCGA	LD	OV	TCGA-24-1563-01A	THSD4	chr15	71839820	+	NR2E3	chr15	72099357	+
5CDS-5UTR	ENST00000361413	ENST00000317276		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5CDS-intron	ENST00000361413	ENST00000581082		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5CDS-intron	ENST00000361413	ENST00000578089		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5CDS-intron	ENST00000361413	ENST00000354903		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5UTR-5UTR	ENST00000542606	ENST00000317276		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5UTR-intron	ENST00000542606	ENST00000581082		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5UTR-intron	ENST00000542606	ENST00000578089		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
5UTR-intron	ENST00000542606	ENST00000354903		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-5UTR	ENST00000572370	ENST00000317276		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000572370	ENST00000581082		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000572370	ENST00000578089		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000572370	ENST00000354903		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-5UTR	ENST00000589033	ENST00000317276		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000589033	ENST00000581082		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000589033	ENST00000578089		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000589033	ENST00000354903		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-5UTR	ENST00000575027	ENST00000317276		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000575027	ENST00000581082		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000575027	ENST00000578089		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
intron-intron	ENST00000575027	ENST00000354903		TCGA	LD	OV	TCGA-24-1564-01A	KIAA0753	chr17	6538331	-	PER1	chr17	8054163	-
In-frame	ENST00000350061	ENST00000420323		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
5CDS-intron	ENST00000350061	ENST00000466628		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
In-frame	ENST00000288139	ENST00000420323		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
5CDS-intron	ENST00000288139	ENST00000466628		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
In-frame	ENST00000422281	ENST00000420323		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
5CDS-intron	ENST00000422281	ENST00000466628		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
intron-3CDS	ENST00000498251	ENST00000420323		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
intron-intron	ENST00000498251	ENST00000466628		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
intron-3CDS	ENST00000540742	ENST00000420323		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
intron-intron	ENST00000540742	ENST00000466628		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
intron-3CDS	ENST00000544977	ENST00000420323		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
intron-intron	ENST00000544977	ENST00000466628		TCGA	LD	OV	TCGA-24-1603-01A	CACNA1D	chr3	53535747	+	DNAH1	chr3	52391630	+
In-frame	ENST00000420323	ENST00000394729		TCGA	LD	OV	TCGA-24-1603-01A	DNAH1	chr3	52391751	+	PRKCD	chr3	53221356	+
In-frame	ENST00000420323	ENST00000330452		TCGA	LD	OV	TCGA-24-1603-01A	DNAH1	chr3	52391751	+	PRKCD	chr3	53221356	+
5CDS-intron	ENST00000420323	ENST00000477794		TCGA	LD	OV	TCGA-24-1603-01A	DNAH1	chr3	52391751	+	PRKCD	chr3	53221356	+
intron-3CDS	ENST00000466628	ENST00000394729		TCGA	LD	OV	TCGA-24-1603-01A	DNAH1	chr3	52391751	+	PRKCD	chr3	53221356	+
intron-3CDS	ENST00000466628	ENST00000330452		TCGA	LD	OV	TCGA-24-1603-01A	DNAH1	chr3	52391751	+	PRKCD	chr3	53221356	+
intron-intron	ENST00000466628	ENST00000477794		TCGA	LD	OV	TCGA-24-1603-01A	DNAH1	chr3	52391751	+	PRKCD	chr3	53221356	+
intron-3CDS	ENST00000423902	ENST00000347528		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000423902	ENST00000289734		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000423902	ENST00000379758		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000423902	ENST00000396942		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000423902	ENST00000396945		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000423902	ENST00000352337		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000423902	ENST00000265709		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000423902	ENST00000457297		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000423902	ENST00000522231		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000423902	ENST00000522543		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000423902	ENST00000314214		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000423902	ENST00000521407		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000347528		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000289734		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000379758		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000396942		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000396945		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000352337		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000524602	ENST00000265709		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000524602	ENST00000457297		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000524602	ENST00000522231		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000524602	ENST00000522543		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000524602	ENST00000314214		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000524602	ENST00000521407		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000347528		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000289734		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000379758		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000396942		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000396945		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000352337		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000525508	ENST00000265709		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000525508	ENST00000457297		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000525508	ENST00000522231		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000525508	ENST00000522543		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000525508	ENST00000314214		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000525508	ENST00000521407		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000347528		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000289734		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000379758		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000396942		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000396945		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000352337		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-3CDS	ENST00000529472	ENST00000265709		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000529472	ENST00000457297		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000529472	ENST00000522231		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000529472	ENST00000522543		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000529472	ENST00000314214		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
intron-intron	ENST00000529472	ENST00000521407		TCGA	LD	OV	TCGA-24-1604-01A	CHD7	chr8	61721943	+	ANK1	chr8	41583464	-
Frame-shit	ENST00000264414	ENST00000360540		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-intron	ENST00000264414	ENST00000544451		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-5UTR	ENST00000264414	ENST00000519559		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-5UTR	ENST00000264414	ENST00000522514		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-intron	ENST00000264414	ENST00000521344		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
Frame-shit	ENST00000344951	ENST00000360540		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-intron	ENST00000344951	ENST00000544451		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-5UTR	ENST00000344951	ENST00000519559		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-5UTR	ENST00000344951	ENST00000522514		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
5CDS-intron	ENST00000344951	ENST00000521344		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-3CDS	ENST00000409096	ENST00000360540		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-intron	ENST00000409096	ENST00000544451		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-5UTR	ENST00000409096	ENST00000519559		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-5UTR	ENST00000409096	ENST00000522514		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-intron	ENST00000409096	ENST00000521344		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-3CDS	ENST00000409777	ENST00000360540		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-intron	ENST00000409777	ENST00000544451		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-5UTR	ENST00000409777	ENST00000519559		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-5UTR	ENST00000409777	ENST00000522514		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-intron	ENST00000409777	ENST00000521344		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-3CDS	ENST00000432260	ENST00000360540		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-intron	ENST00000432260	ENST00000544451		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-5UTR	ENST00000432260	ENST00000519559		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-5UTR	ENST00000432260	ENST00000522514		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-intron	ENST00000432260	ENST00000521344		TCGA	LD	OV	TCGA-24-1604-01A	CUL3	chr2	225449661	-	PCMTD1	chr8	52758323	-
intron-3CDS	ENST00000357103	ENST00000305108		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000357103	ENST00000397265		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000357103	ENST00000542920		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000357103	ENST00000433832		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-intron	ENST00000357103	ENST00000537416		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000544470	ENST00000305108		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000544470	ENST00000397265		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000544470	ENST00000542920		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-5UTR	ENST00000544470	ENST00000433832		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-intron	ENST00000544470	ENST00000537416		TCGA	LD	OV	TCGA-24-1616-01A	ADIPOR2	chr12	1800379	+	NINJ2	chr12	675344	-
intron-3CDS	ENST00000296043	ENST00000433372		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000296043	ENST00000331145		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000296043	ENST00000395759		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000296043	ENST00000325278		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-intron	ENST00000296043	ENST00000461101		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000473602	ENST00000433372		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000473602	ENST00000331145		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000473602	ENST00000395759		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000473602	ENST00000325278		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
intron-intron	ENST00000473602	ENST00000461101		TCGA	LD	OV	TCGA-24-1616-01A	SHROOM3	chr4	77507622	+	MTHFD2L	chr4	75065511	+
In-frame	ENST00000263168	ENST00000271277		TCGA	LD	OV	TCGA-24-1842-01A	CAPZA1	chr1	113202401	+	CTTNBP2NL	chr1	112991564	+
5CDS-intron	ENST00000263168	ENST00000607039		TCGA	LD	OV	TCGA-24-1842-01A	CAPZA1	chr1	113202401	+	CTTNBP2NL	chr1	112991564	+
3UTR-3CDS	ENST00000476936	ENST00000271277		TCGA	LD	OV	TCGA-24-1842-01A	CAPZA1	chr1	113202401	+	CTTNBP2NL	chr1	112991564	+
3UTR-intron	ENST00000476936	ENST00000607039		TCGA	LD	OV	TCGA-24-1842-01A	CAPZA1	chr1	113202401	+	CTTNBP2NL	chr1	112991564	+
In-frame	ENST00000398970	ENST00000544865		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000398970	ENST00000263073		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000398970	ENST00000354901		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
Frame-shit	ENST00000398970	ENST00000536871		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
5CDS-5UTR	ENST00000398970	ENST00000573166		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000300574	ENST00000544865		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000300574	ENST00000263073		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000300574	ENST00000354901		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
Frame-shit	ENST00000300574	ENST00000536871		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
5CDS-5UTR	ENST00000300574	ENST00000573166		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000574295	ENST00000544865		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000574295	ENST00000263073		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000574295	ENST00000354901		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
Frame-shit	ENST00000574295	ENST00000536871		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
5CDS-5UTR	ENST00000574295	ENST00000573166		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
intron-3CDS	ENST00000572145	ENST00000544865		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
intron-3CDS	ENST00000572145	ENST00000263073		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
intron-3CDS	ENST00000572145	ENST00000354901		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
intron-3CDS	ENST00000572145	ENST00000536871		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
intron-5UTR	ENST00000572145	ENST00000573166		TCGA	LD	OV	TCGA-24-1842-01A	CRK	chr17	1359171	-	SMG6	chr17	1964916	-
In-frame	ENST00000533608	ENST00000299240		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000533608	ENST00000039989		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
5CDS-3UTR	ENST00000533608	ENST00000526774		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000358681	ENST00000299240		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000358681	ENST00000039989		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
5CDS-3UTR	ENST00000358681	ENST00000526774		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000395673	ENST00000299240		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000395673	ENST00000039989		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
5CDS-3UTR	ENST00000395673	ENST00000526774		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000343631	ENST00000299240		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
In-frame	ENST00000343631	ENST00000039989		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
5CDS-3UTR	ENST00000343631	ENST00000526774		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
intron-3CDS	ENST00000529186	ENST00000299240		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
intron-3CDS	ENST00000529186	ENST00000039989		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
intron-3UTR	ENST00000529186	ENST00000526774		TCGA	LD	OV	TCGA-24-1842-01A	EXT2	chr11	44151688	+	TTC17	chr11	43436140	+
5CDS-intron	ENST00000493293	ENST00000367689		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000357444		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000251507		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000325589		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000367686		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000367687		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000347255		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000489615		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000478442		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000486220		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000392064		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000493293	ENST00000367688		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000367689		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000357444		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000251507		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000325589		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000367686		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000367687		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000347255		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000489615		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000478442		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000486220		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000392064		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000264144	ENST00000367688		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000367689		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000357444		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000251507		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000325589		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000367686		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000367687		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000347255		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000489615		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000478442		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000486220		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000392064		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
intron-intron	ENST00000461729	ENST00000367688		TCGA	LD	OV	TCGA-24-1842-01A	LAMC2	chr1	183205739	+	RABGAP1L	chr1	174606513	+
Frame-shit	ENST00000440884	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000440884	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000440884	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000440884	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000440884	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000440884	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000440884	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000440884	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000416682	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000416682	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000429436	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000429436	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000303622	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000303622	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000216288	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000216288	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000553942	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000553942	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000335102	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000335102	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000589222		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000407086		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000390652		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000408905		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000588462		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000585744		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000561071	ENST00000588874		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-3UTR	ENST00000561071	ENST00000585812		TCGA	LD	OV	TCGA-24-1842-01A	MARK3	chr14	103852417	+	BCAS3	chr17	59445688	+
intron-intron	ENST00000264674	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000264674	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000392736	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000464456	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000472280	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-5UTR	ENST00000494292	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000468789	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000460814	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000433243	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000316428		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-5UTR	ENST00000485957	ENST00000264676		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000523069		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000397805		TCGA	LD	OV	TCGA-24-1842-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
Frame-shit	ENST00000571589	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000571589	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000571589	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000571589	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000571589	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000571589	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000574045	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000574045	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000574045	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000574045	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000574045	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000574045	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000318282	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000318282	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000318282	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000318282	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000318282	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000318282	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000572567	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000572567	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000572567	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000572567	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000572567	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000572567	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000341243	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000341243	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000341243	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000341243	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000341243	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000341243	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-3CDS	ENST00000575537	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-3CDS	ENST00000575537	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-3CDS	ENST00000575537	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-3CDS	ENST00000575537	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-3CDS	ENST00000575537	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
3UTR-intron	ENST00000575537	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000573051	ENST00000550418		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000573051	ENST00000553186		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000573051	ENST00000547372		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000573051	ENST00000422070		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000573051	ENST00000535565		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000547427		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000552089		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000547338		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000436368		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000311745		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000355637		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
intron-intron	ENST00000573051	ENST00000340209		TCGA	LD	OV	TCGA-24-1842-01A	MKL2	chr16	14234617	+	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000381556	ENST00000358183		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000381556	ENST00000414043		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000381556	ENST00000361571		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000381556	ENST00000572543		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000381556	ENST00000381311		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000381556	ENST00000348066		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
5CDS-5UTR	ENST00000381556	ENST00000571831		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000254718	ENST00000358183		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000254718	ENST00000414043		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000254718	ENST00000361571		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000254718	ENST00000572543		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000254718	ENST00000381311		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000254718	ENST00000348066		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
5CDS-5UTR	ENST00000254718	ENST00000571831		TCGA	LD	OV	TCGA-24-1842-01A	MYBBP1A	chr17	4451819	-	CAMTA2	chr17	4886338	-
Frame-shit	ENST00000244137	ENST00000520965		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
Frame-shit	ENST00000244137	ENST00000391711		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
Frame-shit	ENST00000397032	ENST00000520965		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
Frame-shit	ENST00000397032	ENST00000391711		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
Frame-shit	ENST00000436370	ENST00000520965		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
Frame-shit	ENST00000436370	ENST00000391711		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
intron-3CDS	ENST00000591968	ENST00000520965		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
intron-3CDS	ENST00000591968	ENST00000391711		TCGA	LD	OV	TCGA-24-1842-01A	PEPD	chr19	34003499	-	ZNF829	chr19	37383373	-
5CDS-5UTR	ENST00000304611	ENST00000595891		TCGA	LD	OV	TCGA-24-1842-01A	PEX6	chr6	42933419	-	MBD3L1	chr19	8951588	+
5CDS-intron	ENST00000304611	ENST00000305625		TCGA	LD	OV	TCGA-24-1842-01A	PEX6	chr6	42933419	-	MBD3L1	chr19	8951588	+
3UTR-5UTR	ENST00000244546	ENST00000595891		TCGA	LD	OV	TCGA-24-1842-01A	PEX6	chr6	42933419	-	MBD3L1	chr19	8951588	+
3UTR-intron	ENST00000244546	ENST00000305625		TCGA	LD	OV	TCGA-24-1842-01A	PEX6	chr6	42933419	-	MBD3L1	chr19	8951588	+
Frame-shit	ENST00000216367	ENST00000396020		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000216367	ENST00000245458		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000216367	ENST00000557111		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000539565	ENST00000396020		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000539565	ENST00000245458		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000539565	ENST00000557111		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5UTR-3CDS	ENST00000556584	ENST00000396020		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5UTR-3CDS	ENST00000556584	ENST00000245458		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5UTR-5UTR	ENST00000556584	ENST00000557111		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000554396	ENST00000396020		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000554396	ENST00000245458		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000554396	ENST00000557111		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000553805	ENST00000396020		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
Frame-shit	ENST00000553805	ENST00000245458		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
5CDS-5UTR	ENST00000553805	ENST00000557111		TCGA	LD	OV	TCGA-24-1842-01A	POLE2	chr14	50154854	-	RPS29	chr14	50052767	-
intron-3CDS	ENST00000326956	ENST00000371269		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
intron-intron	ENST00000326956	ENST00000537443		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
intron-intron	ENST00000326956	ENST00000535035		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5UTR-3CDS	ENST00000417664	ENST00000371269		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5UTR-intron	ENST00000417664	ENST00000537443		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5UTR-intron	ENST00000417664	ENST00000535035		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
In-frame	ENST00000371320	ENST00000371269		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5CDS-intron	ENST00000371320	ENST00000537443		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5CDS-intron	ENST00000371320	ENST00000535035		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
In-frame	ENST00000371319	ENST00000371269		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5CDS-intron	ENST00000371319	ENST00000537443		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5CDS-intron	ENST00000371319	ENST00000535035		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
In-frame	ENST00000357475	ENST00000371269		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5CDS-intron	ENST00000357475	ENST00000537443		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
5CDS-intron	ENST00000357475	ENST00000535035		TCGA	LD	OV	TCGA-24-1842-01A	SSBP3	chr1	54867534	-	DHCR24	chr1	55341720	-
In-frame	ENST00000566780	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000566780	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000566780	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000566780	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000566780	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000566780	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
In-frame	ENST00000406884	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000406884	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000406884	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000406884	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000406884	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000406884	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
In-frame	ENST00000539474	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000539474	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000539474	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000539474	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000539474	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000539474	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
In-frame	ENST00000402655	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000402655	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000402655	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000402655	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000402655	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000402655	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
In-frame	ENST00000408984	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000408984	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000408984	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000408984	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000408984	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000408984	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
In-frame	ENST00000355860	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000355860	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000355860	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000355860	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-intron	ENST00000355860	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
5CDS-3UTR	ENST00000355860	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000565791	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000565791	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000565791	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000565791	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000565791	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000565791	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000569818	ENST00000564085		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-3CDS	ENST00000569818	ENST00000268533		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000569818	ENST00000568787		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000569818	ENST00000437314		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-intron	ENST00000569818	ENST00000563839		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
intron-3UTR	ENST00000569818	ENST00000564031		TCGA	LD	OV	TCGA-24-1842-01A	WWOX	chr16	78149051	+	NUDT7	chr16	77775479	+
Frame-shit	ENST00000252699	ENST00000269878		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
Frame-shit	ENST00000252699	ENST00000379859		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000252699	ENST00000541493		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
Frame-shit	ENST00000424234	ENST00000269878		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
Frame-shit	ENST00000424234	ENST00000379859		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000424234	ENST00000541493		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
Frame-shit	ENST00000390009	ENST00000269878		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
Frame-shit	ENST00000390009	ENST00000379859		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000390009	ENST00000541493		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
intron-3CDS	ENST00000497637	ENST00000269878		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
intron-3CDS	ENST00000497637	ENST00000379859		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
intron-5UTR	ENST00000497637	ENST00000541493		TCGA	LD	OV	TCGA-24-1843-01A	ACTN4	chr19	39138547	+	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000263102	ENST00000398958		TCGA	LD	OV	TCGA-24-1843-01A	CCDC6	chr10	61665880	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000263102	ENST00000373833		TCGA	LD	OV	TCGA-24-1843-01A	CCDC6	chr10	61665880	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000263102	ENST00000373832		TCGA	LD	OV	TCGA-24-1843-01A	CCDC6	chr10	61665880	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000263102	ENST00000373831		TCGA	LD	OV	TCGA-24-1843-01A	CCDC6	chr10	61665880	-	RCC1	chr1	28856370	+
5CDS-intron	ENST00000263102	ENST00000429051		TCGA	LD	OV	TCGA-24-1843-01A	CCDC6	chr10	61665880	-	RCC1	chr1	28856370	+
In-frame	ENST00000296181	ENST00000450793		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000538141		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000380180		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000318007		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000437932		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000317968		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000542407		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000508216		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
In-frame	ENST00000296181	ENST00000514743		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
5CDS-3UTR	ENST00000296181	ENST00000380176		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
5CDS-intron	ENST00000296181	ENST00000359265		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
5CDS-intron	ENST00000296181	ENST00000512274		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
5CDS-intron	ENST00000296181	ENST00000504489		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000450793		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000538141		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000380180		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000318007		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000437932		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000317968		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000542407		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000508216		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3CDS	ENST00000461306	ENST00000514743		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-3UTR	ENST00000461306	ENST00000380176		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-intron	ENST00000461306	ENST00000359265		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-intron	ENST00000461306	ENST00000512274		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
intron-intron	ENST00000461306	ENST00000504489		TCGA	LD	OV	TCGA-24-1843-01A	ITGB5	chr3	124578089	-	PDLIM5	chr4	95507559	+
5CDS-intron	ENST00000283882	ENST00000332272		TCGA	LD	OV	TCGA-24-1845-01A	CFDP1	chr16	75445723	-	CHST6	chr16	75507365	-
5CDS-intron	ENST00000283882	ENST00000390664		TCGA	LD	OV	TCGA-24-1845-01A	CFDP1	chr16	75445723	-	CHST6	chr16	75507365	-
5UTR-intron	ENST00000564286	ENST00000332272		TCGA	LD	OV	TCGA-24-1845-01A	CFDP1	chr16	75445723	-	CHST6	chr16	75507365	-
5UTR-intron	ENST00000564286	ENST00000390664		TCGA	LD	OV	TCGA-24-1845-01A	CFDP1	chr16	75445723	-	CHST6	chr16	75507365	-
In-frame	ENST00000221455	ENST00000405636		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
Frame-shit	ENST00000221455	ENST00000252487		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000221455	ENST00000592434		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000221455	ENST00000426677		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
In-frame	ENST00000391953	ENST00000405636		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
Frame-shit	ENST00000391953	ENST00000252487		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000391953	ENST00000592434		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
5CDS-3UTR	ENST00000391953	ENST00000426677		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
intron-3CDS	ENST00000544944	ENST00000405636		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
intron-3CDS	ENST00000544944	ENST00000252487		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
intron-3UTR	ENST00000544944	ENST00000592434		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
intron-3UTR	ENST00000544944	ENST00000426677		TCGA	LD	OV	TCGA-24-1845-01A	CLASRP	chr19	45571738	+	TOMM40	chr19	45406287	+
In-frame	ENST00000328879	ENST00000458578		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000328879	ENST00000342192		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5CDS-intron	ENST00000328879	ENST00000545681		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000440659	ENST00000458578		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000440659	ENST00000342192		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000440659	ENST00000545681		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000470335	ENST00000458578		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000470335	ENST00000342192		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000470335	ENST00000545681		TCGA	LD	OV	TCGA-24-1845-01A	KLHL22	chr22	20843272	-	UBE2L3	chr22	21947150	+
Frame-shit	ENST00000394287	ENST00000294053		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000394287	ENST00000538039		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000394287	ENST00000437826		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000394287	ENST00000340729		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000394287	ENST00000543042		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5CDS-intron	ENST00000394287	ENST00000445069		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5CDS-intron	ENST00000394287	ENST00000538021		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5CDS-intron	ENST00000394287	ENST00000542555		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000300651	ENST00000294053		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000300651	ENST00000538039		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000300651	ENST00000437826		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000300651	ENST00000340729		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
Frame-shit	ENST00000300651	ENST00000543042		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5CDS-intron	ENST00000300651	ENST00000445069		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5CDS-intron	ENST00000300651	ENST00000538021		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5CDS-intron	ENST00000300651	ENST00000542555		TCGA	LD	OV	TCGA-24-1845-01A	MED1	chr17	37607291	-	CLPB	chr11	72040848	-
5UTR-3CDS	ENST00000315127	ENST00000268099		TCGA	LD	OV	TCGA-24-1846-01A	EDC3	chr15	74988221	-	SCAMP2	chr15	75141042	-
5UTR-3CDS	ENST00000426797	ENST00000268099		TCGA	LD	OV	TCGA-24-1846-01A	EDC3	chr15	74988221	-	SCAMP2	chr15	75141042	-
5UTR-3CDS	ENST00000568176	ENST00000268099		TCGA	LD	OV	TCGA-24-1846-01A	EDC3	chr15	74988221	-	SCAMP2	chr15	75141042	-
intron-3CDS	ENST00000562047	ENST00000268099		TCGA	LD	OV	TCGA-24-1846-01A	EDC3	chr15	74988221	-	SCAMP2	chr15	75141042	-
In-frame	ENST00000244230	ENST00000234396		TCGA	LD	OV	TCGA-24-1846-01A	MPHOSPH10	chr2	71361927	+	ATP6V1B1	chr2	71185176	+
In-frame	ENST00000244230	ENST00000412314		TCGA	LD	OV	TCGA-24-1846-01A	MPHOSPH10	chr2	71361927	+	ATP6V1B1	chr2	71185176	+
In-frame	ENST00000498451	ENST00000234396		TCGA	LD	OV	TCGA-24-1846-01A	MPHOSPH10	chr2	71361927	+	ATP6V1B1	chr2	71185176	+
In-frame	ENST00000498451	ENST00000412314		TCGA	LD	OV	TCGA-24-1846-01A	MPHOSPH10	chr2	71361927	+	ATP6V1B1	chr2	71185176	+
intron-3CDS	ENST00000468427	ENST00000234396		TCGA	LD	OV	TCGA-24-1846-01A	MPHOSPH10	chr2	71361927	+	ATP6V1B1	chr2	71185176	+
intron-3CDS	ENST00000468427	ENST00000412314		TCGA	LD	OV	TCGA-24-1846-01A	MPHOSPH10	chr2	71361927	+	ATP6V1B1	chr2	71185176	+
5CDS-5UTR	ENST00000332830	ENST00000408971		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000332830	ENST00000359450		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000577226	ENST00000408971		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000577226	ENST00000359450		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000268756	ENST00000408971		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5CDS-5UTR	ENST00000268756	ENST00000359450		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000582655	ENST00000408971		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
5UTR-5UTR	ENST00000582655	ENST00000359450		TCGA	LD	OV	TCGA-24-1847-01A	PHF12	chr17	27248706	-	TIAF1	chr17	27401932	-
In-frame	ENST00000544935	ENST00000275364		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-intron	ENST00000544935	ENST00000544127		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000544935	ENST00000491117		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000544935	ENST00000407904		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000544935	ENST00000407653		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000544935	ENST00000396960		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
Frame-shit	ENST00000537384	ENST00000275364		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-intron	ENST00000537384	ENST00000544127		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000537384	ENST00000491117		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000537384	ENST00000407904		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000537384	ENST00000407653		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000537384	ENST00000396960		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
In-frame	ENST00000406797	ENST00000275364		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-intron	ENST00000406797	ENST00000544127		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000406797	ENST00000491117		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000406797	ENST00000407904		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000406797	ENST00000407653		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000406797	ENST00000396960		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
In-frame	ENST00000403562	ENST00000275364		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-intron	ENST00000403562	ENST00000544127		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000403562	ENST00000491117		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000403562	ENST00000407904		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000403562	ENST00000407653		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000403562	ENST00000396960		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
Frame-shit	ENST00000360274	ENST00000275364		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-intron	ENST00000360274	ENST00000544127		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000360274	ENST00000491117		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000360274	ENST00000407904		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000360274	ENST00000407653		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
5CDS-5UTR	ENST00000360274	ENST00000396960		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
intron-3CDS	ENST00000488474	ENST00000275364		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
intron-intron	ENST00000488474	ENST00000544127		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
intron-5UTR	ENST00000488474	ENST00000491117		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
intron-5UTR	ENST00000488474	ENST00000407904		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
intron-5UTR	ENST00000488474	ENST00000407653		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
intron-5UTR	ENST00000488474	ENST00000396960		TCGA	LD	OV	TCGA-24-1847-01A	PRKAR1B	chr7	645830	-	GNA12	chr7	2773135	-
In-frame	ENST00000359428	ENST00000277551		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000359428	ENST00000371372		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000359428	ENST00000277549		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000359428	ENST00000371363		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000359428	ENST00000371355		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000359428	ENST00000371357		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000359428	ENST00000277550		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000359428	ENST00000371367		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000359428	ENST00000545473		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-3UTR	ENST00000359428	ENST00000371365		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000411637	ENST00000277551		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000411637	ENST00000371372		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000411637	ENST00000277549		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000411637	ENST00000371363		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000411637	ENST00000371355		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000411637	ENST00000371357		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000411637	ENST00000277550		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000411637	ENST00000371367		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000411637	ENST00000545473		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-3UTR	ENST00000411637	ENST00000371365		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000451030	ENST00000277551		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000451030	ENST00000371372		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000451030	ENST00000277549		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000451030	ENST00000371363		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000451030	ENST00000371355		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000451030	ENST00000371357		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000451030	ENST00000277550		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000451030	ENST00000371367		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-intron	ENST00000451030	ENST00000545473		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
5CDS-3UTR	ENST00000451030	ENST00000371365		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000483497	ENST00000277551		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000483497	ENST00000371372		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000483497	ENST00000277549		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000483497	ENST00000371363		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000483497	ENST00000371355		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000483497	ENST00000371357		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-intron	ENST00000483497	ENST00000277550		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-intron	ENST00000483497	ENST00000371367		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-intron	ENST00000483497	ENST00000545473		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3UTR	ENST00000483497	ENST00000371365		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000465486	ENST00000277551		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000465486	ENST00000371372		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000465486	ENST00000277549		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000465486	ENST00000371363		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000465486	ENST00000371355		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3CDS	ENST00000465486	ENST00000371357		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-intron	ENST00000465486	ENST00000277550		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-intron	ENST00000465486	ENST00000371367		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-intron	ENST00000465486	ENST00000545473		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
intron-3UTR	ENST00000465486	ENST00000371365		TCGA	LD	OV	TCGA-24-1849-01A	NUP214	chr9	134039531	+	CACNA1B	chr9	141006850	+
In-frame	ENST00000392272	ENST00000353866		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000392272	ENST00000393915		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000392272	ENST00000432118		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000392272	ENST00000358715		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000368173	ENST00000353866		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000368173	ENST00000393915		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000368173	ENST00000432118		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000368173	ENST00000358715		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5UTR-3CDS	ENST00000360089	ENST00000353866		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5UTR-3CDS	ENST00000360089	ENST00000393915		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5UTR-intron	ENST00000360089	ENST00000432118		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5UTR-intron	ENST00000360089	ENST00000358715		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000359209	ENST00000353866		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000359209	ENST00000393915		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000359209	ENST00000432118		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000359209	ENST00000358715		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000416935	ENST00000353866		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
In-frame	ENST00000416935	ENST00000393915		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000416935	ENST00000432118		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000416935	ENST00000358715		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
intron-3CDS	ENST00000368172	ENST00000353866		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
intron-3CDS	ENST00000368172	ENST00000393915		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
intron-intron	ENST00000368172	ENST00000432118		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
intron-intron	ENST00000368172	ENST00000358715		TCGA	LD	OV	TCGA-24-1850-01A	KIRREL	chr1	157963518	+	HMMR	chr5	162890862	+
5UTR-intron	ENST00000409419	ENST00000302907		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409419	ENST00000391752		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409419	ENST00000402367		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409419	ENST00000391751		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409419	ENST00000391753		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409419	ENST00000441429		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409587	ENST00000302907		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409587	ENST00000391752		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409587	ENST00000402367		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409587	ENST00000391751		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409587	ENST00000391753		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409587	ENST00000441429		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
3UTR-intron	ENST00000594085	ENST00000302907		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
3UTR-intron	ENST00000594085	ENST00000391752		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
3UTR-intron	ENST00000594085	ENST00000402367		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
3UTR-intron	ENST00000594085	ENST00000391751		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
3UTR-intron	ENST00000594085	ENST00000391753		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
3UTR-intron	ENST00000594085	ENST00000441429		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409735	ENST00000302907		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409735	ENST00000391752		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409735	ENST00000402367		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409735	ENST00000391751		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409735	ENST00000391753		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-intron	ENST00000409735	ENST00000441429		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000356508	ENST00000302907		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000356508	ENST00000391752		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000356508	ENST00000402367		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000356508	ENST00000391751		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000356508	ENST00000391753		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000356508	ENST00000441429		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000409281	ENST00000302907		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000409281	ENST00000391752		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000409281	ENST00000402367		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000409281	ENST00000391751		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000409281	ENST00000391753		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
intron-intron	ENST00000409281	ENST00000441429		TCGA	LD	OV	TCGA-24-1850-01A	PLD3	chr19	40854675	+	RPS9	chr19	54735617	+
5UTR-5UTR	ENST00000416067	ENST00000338270		TCGA	LD	OV	TCGA-24-1850-01A	TEKT4P2	chr21	9966322	-	ERAS	chrX	48687491	+
In-frame	ENST00000462484	ENST00000366933		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
5CDS-intron	ENST00000462484	ENST00000471021		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
5UTR-3CDS	ENST00000334856	ENST00000366933		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
5UTR-intron	ENST00000334856	ENST00000471021		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
In-frame	ENST00000460843	ENST00000366933		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
5CDS-intron	ENST00000460843	ENST00000471021		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
3UTR-3CDS	ENST00000371394	ENST00000366933		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
3UTR-intron	ENST00000371394	ENST00000471021		TCGA	LD	OV	TCGA-24-1924-01A	EHMT1	chr9	140513501	+	SPATA17	chr1	217856600	+
Frame-shit	ENST00000377809	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000377809	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000402010	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000402010	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000413835	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000413835	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-3CDS	ENST00000377810	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-3CDS	ENST00000377810	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000315032	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000315032	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000508192	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000508192	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000361128	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000361128	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000350490	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000350490	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000502399	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000502399	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000509502	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000509502	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000513765	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000513765	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000408948	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000408948	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000425897	ENST00000341307		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000425897	ENST00000356000		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000538995		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000377819		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000339997		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000540798		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000537981		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000354497		TCGA	LD	OV	TCGA-24-1924-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000383836	ENST00000264926		TCGA	LD	OV	TCGA-24-1924-01A	SRGAP3	chr3	9089075	-	RAD18	chr3	8932135	-
5CDS-intron	ENST00000383836	ENST00000495087		TCGA	LD	OV	TCGA-24-1924-01A	SRGAP3	chr3	9089075	-	RAD18	chr3	8932135	-
Frame-shit	ENST00000360413	ENST00000264926		TCGA	LD	OV	TCGA-24-1924-01A	SRGAP3	chr3	9089075	-	RAD18	chr3	8932135	-
5CDS-intron	ENST00000360413	ENST00000495087		TCGA	LD	OV	TCGA-24-1924-01A	SRGAP3	chr3	9089075	-	RAD18	chr3	8932135	-
5UTR-3CDS	ENST00000433332	ENST00000264926		TCGA	LD	OV	TCGA-24-1924-01A	SRGAP3	chr3	9089075	-	RAD18	chr3	8932135	-
5UTR-intron	ENST00000433332	ENST00000495087		TCGA	LD	OV	TCGA-24-1924-01A	SRGAP3	chr3	9089075	-	RAD18	chr3	8932135	-
In-frame	ENST00000324856	ENST00000321265		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
5CDS-intron	ENST00000324856	ENST00000484772		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
In-frame	ENST00000457599	ENST00000321265		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
5CDS-intron	ENST00000457599	ENST00000484772		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
In-frame	ENST00000374152	ENST00000321265		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
5CDS-intron	ENST00000374152	ENST00000484772		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
intron-3CDS	ENST00000540690	ENST00000321265		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
intron-intron	ENST00000540690	ENST00000484772		TCGA	LD	OV	TCGA-24-1928-01A	ARID1A	chr1	27059283	+	NUDC	chr1	27267948	+
5CDS-5UTR	ENST00000251081	ENST00000278886		TCGA	LD	OV	TCGA-24-1928-01A	DSC2	chr18	28666539	-	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000251081	ENST00000422516		TCGA	LD	OV	TCGA-24-1928-01A	DSC2	chr18	28666539	-	NINL	chr20	25507234	-
5CDS-intron	ENST00000251081	ENST00000464285		TCGA	LD	OV	TCGA-24-1928-01A	DSC2	chr18	28666539	-	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000280904	ENST00000278886		TCGA	LD	OV	TCGA-24-1928-01A	DSC2	chr18	28666539	-	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000280904	ENST00000422516		TCGA	LD	OV	TCGA-24-1928-01A	DSC2	chr18	28666539	-	NINL	chr20	25507234	-
5CDS-intron	ENST00000280904	ENST00000464285		TCGA	LD	OV	TCGA-24-1928-01A	DSC2	chr18	28666539	-	NINL	chr20	25507234	-
5CDS-5UTR	ENST00000510197	ENST00000361906		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000510197	ENST00000361684		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-intron	ENST00000510197	ENST00000504337		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000339906	ENST00000361906		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000339906	ENST00000361684		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-intron	ENST00000339906	ENST00000504337		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000515604	ENST00000361906		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000515604	ENST00000361684		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-intron	ENST00000515604	ENST00000504337		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000424749	ENST00000361906		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-5UTR	ENST00000424749	ENST00000361684		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
5CDS-intron	ENST00000424749	ENST00000504337		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000515589	ENST00000361906		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000515589	ENST00000361684		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
intron-intron	ENST00000515589	ENST00000504337		TCGA	LD	OV	TCGA-24-1928-01A	FAM47E	chr4	77184996	+	TMEM184B	chr22	38644025	-
intron-5UTR	ENST00000399262	ENST00000493899		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399262	ENST00000242480		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399262	ENST00000411732		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399262	ENST00000439032		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000402544	ENST00000493899		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000402544	ENST00000242480		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000402544	ENST00000411732		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000402544	ENST00000439032		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399251	ENST00000493899		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399251	ENST00000242480		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399251	ENST00000411732		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000399251	ENST00000439032		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000542921	ENST00000493899		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000542921	ENST00000242480		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000542921	ENST00000411732		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000542921	ENST00000439032		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000489372	ENST00000493899		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000489372	ENST00000242480		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000489372	ENST00000411732		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
intron-5UTR	ENST00000489372	ENST00000439032		TCGA	LD	OV	TCGA-24-1928-01A	JMJD1C	chr10	65281498	-	EGR2	chr10	64575729	-
5UTR-3CDS	ENST00000358026	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000358026	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000344626	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000344626	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000429416	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000429416	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000541122	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000541122	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000589677	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000589677	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000444061	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
5UTR-3CDS	ENST00000444061	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000590574	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000590574	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000413806	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000413806	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000450717	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000450717	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	LD	OV	TCGA-24-1928-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000598155	ENST00000298248		TCGA	LD	OV	TCGA-24-1928-01A	SYMPK	chr19	46352008	-	CRYL1	chr13	20987526	-
intron-3CDS	ENST00000598155	ENST00000382812		TCGA	LD	OV	TCGA-24-1928-01A	SYMPK	chr19	46352008	-	CRYL1	chr13	20987526	-
intron-intron	ENST00000598155	ENST00000480748		TCGA	LD	OV	TCGA-24-1928-01A	SYMPK	chr19	46352008	-	CRYL1	chr13	20987526	-
In-frame	ENST00000245934	ENST00000298248		TCGA	LD	OV	TCGA-24-1928-01A	SYMPK	chr19	46352008	-	CRYL1	chr13	20987526	-
In-frame	ENST00000245934	ENST00000382812		TCGA	LD	OV	TCGA-24-1928-01A	SYMPK	chr19	46352008	-	CRYL1	chr13	20987526	-
5CDS-intron	ENST00000245934	ENST00000480748		TCGA	LD	OV	TCGA-24-1928-01A	SYMPK	chr19	46352008	-	CRYL1	chr13	20987526	-
Frame-shit	ENST00000217515	ENST00000256857		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
Frame-shit	ENST00000217515	ENST00000529320		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
Frame-shit	ENST00000217515	ENST00000420468		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
intron-3CDS	ENST00000585497	ENST00000256857		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
intron-3CDS	ENST00000585497	ENST00000529320		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
intron-3CDS	ENST00000585497	ENST00000420468		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
Frame-shit	ENST00000590954	ENST00000256857		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
Frame-shit	ENST00000590954	ENST00000529320		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
Frame-shit	ENST00000590954	ENST00000420468		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
In-frame	ENST00000540155	ENST00000256857		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
In-frame	ENST00000540155	ENST00000529320		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
In-frame	ENST00000540155	ENST00000420468		TCGA	LD	OV	TCGA-24-1928-01A	TXNL1	chr18	54278224	-	GRP	chr18	56892724	+
5UTR-3CDS	ENST00000535628	ENST00000329286		TCGA	LD	OV	TCGA-24-1928-01A	ZBTB7C	chr18	45663378	-	RAB12	chr18	8624936	+
intron-3CDS	ENST00000588982	ENST00000329286		TCGA	LD	OV	TCGA-24-1928-01A	ZBTB7C	chr18	45663378	-	RAB12	chr18	8624936	+
intron-3CDS	ENST00000586438	ENST00000329286		TCGA	LD	OV	TCGA-24-1928-01A	ZBTB7C	chr18	45663378	-	RAB12	chr18	8624936	+
intron-3CDS	ENST00000590800	ENST00000329286		TCGA	LD	OV	TCGA-24-1928-01A	ZBTB7C	chr18	45663378	-	RAB12	chr18	8624936	+
intron-3CDS	ENST00000332053	ENST00000329286		TCGA	LD	OV	TCGA-24-1928-01A	ZBTB7C	chr18	45663378	-	RAB12	chr18	8624936	+
5UTR-3CDS	ENST00000351018	ENST00000300737		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
5UTR-3CDS	ENST00000351018	ENST00000527651		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
5UTR-intron	ENST00000351018	ENST00000527484		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
5UTR-intron	ENST00000351018	ENST00000533977		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-3CDS	ENST00000396979	ENST00000300737		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-3CDS	ENST00000396979	ENST00000527651		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000396979	ENST00000527484		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000396979	ENST00000533977		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-3CDS	ENST00000396978	ENST00000300737		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-3CDS	ENST00000396978	ENST00000527651		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000396978	ENST00000527484		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000396978	ENST00000533977		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-3CDS	ENST00000533217	ENST00000300737		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-3CDS	ENST00000533217	ENST00000527651		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000533217	ENST00000527484		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000533217	ENST00000533977		TCGA	LD	OV	TCGA-24-1930-01A	RHOG	chr11	3862124	-	STIM1	chr11	3988782	+
intron-intron	ENST00000221232	ENST00000341701		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000221232	ENST00000607650		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000221232	ENST00000222270		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000221232	ENST00000420124		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-intron	ENST00000358389	ENST00000341701		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000358389	ENST00000607650		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000358389	ENST00000222270		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000358389	ENST00000420124		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
5UTR-intron	ENST00000406403	ENST00000341701		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
5UTR-3UTR	ENST00000406403	ENST00000607650		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
5UTR-3UTR	ENST00000406403	ENST00000222270		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
5UTR-3UTR	ENST00000406403	ENST00000420124		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-intron	ENST00000496327	ENST00000341701		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000496327	ENST00000607650		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000496327	ENST00000222270		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
intron-3UTR	ENST00000496327	ENST00000420124		TCGA	LD	OV	TCGA-24-2019-01A	CNOT3	chr19	54645195	+	KMT2B	chr19	36214043	+
Frame-shit	ENST00000260327	ENST00000299957		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000260327	ENST00000360824		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000260327	ENST00000345795		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-intron	ENST00000260327	ENST00000429162		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
Frame-shit	ENST00000396780	ENST00000299957		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000396780	ENST00000360824		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000396780	ENST00000345795		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-intron	ENST00000396780	ENST00000429162		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
Frame-shit	ENST00000558966	ENST00000299957		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000558966	ENST00000360824		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000558966	ENST00000345795		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-intron	ENST00000558966	ENST00000429162		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
Frame-shit	ENST00000558373	ENST00000299957		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000558373	ENST00000360824		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-3UTR	ENST00000558373	ENST00000345795		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5CDS-intron	ENST00000558373	ENST00000429162		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
intron-3CDS	ENST00000561189	ENST00000299957		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
intron-3UTR	ENST00000561189	ENST00000360824		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
intron-3UTR	ENST00000561189	ENST00000345795		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
intron-intron	ENST00000561189	ENST00000429162		TCGA	LD	OV	TCGA-24-2019-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44671888	+
5UTR-3CDS	ENST00000248996	ENST00000215754		TCGA	LD	OV	TCGA-24-2019-01A	GNAZ	chr22	23412756	+	MIF	chr22	24236959	+
intron-3CDS	ENST00000492538	ENST00000215754		TCGA	LD	OV	TCGA-24-2019-01A	GNAZ	chr22	23412756	+	MIF	chr22	24236959	+
intron-3CDS	ENST00000261596	ENST00000354373		TCGA	LD	OV	TCGA-24-2019-01A	LPIN2	chr18	3003429	-	RFPL1	chr22	29834934	+
intron-3CDS	ENST00000581568	ENST00000354373		TCGA	LD	OV	TCGA-24-2019-01A	LPIN2	chr18	3003429	-	RFPL1	chr22	29834934	+
Frame-shit	ENST00000336868	ENST00000566780		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000336868	ENST00000406884		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
In-frame	ENST00000336868	ENST00000539474		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
Frame-shit	ENST00000336868	ENST00000402655		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000336868	ENST00000408984		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000336868	ENST00000355860		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000336868	ENST00000565791		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
5CDS-intron	ENST00000336868	ENST00000569818		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000577098	ENST00000566780		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000577098	ENST00000406884		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000577098	ENST00000539474		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000577098	ENST00000402655		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000577098	ENST00000408984		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000577098	ENST00000355860		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000577098	ENST00000565791		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000577098	ENST00000569818		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000575801	ENST00000566780		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000575801	ENST00000406884		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000575801	ENST00000539474		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000575801	ENST00000402655		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000575801	ENST00000408984		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000575801	ENST00000355860		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000575801	ENST00000565791		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000575801	ENST00000569818		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000538650	ENST00000566780		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000538650	ENST00000406884		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000538650	ENST00000539474		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000538650	ENST00000402655		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000538650	ENST00000408984		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000538650	ENST00000355860		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000538650	ENST00000565791		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000538650	ENST00000569818		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000537628	ENST00000566780		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000537628	ENST00000406884		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000537628	ENST00000539474		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-3CDS	ENST00000537628	ENST00000402655		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000537628	ENST00000408984		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000537628	ENST00000355860		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000537628	ENST00000565791		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
intron-intron	ENST00000537628	ENST00000569818		TCGA	LD	OV	TCGA-24-2019-01A	NXN	chr17	882559	-	WWOX	chr16	79245505	+
5UTR-3CDS	ENST00000342907	ENST00000256343		TCGA	LD	OV	TCGA-24-2019-01A	ST3GAL2	chr16	70472852	-	CATSPERB	chr14	92047451	-
intron-3CDS	ENST00000393640	ENST00000256343		TCGA	LD	OV	TCGA-24-2019-01A	ST3GAL2	chr16	70472852	-	CATSPERB	chr14	92047451	-
5UTR-3CDS	ENST00000566097	ENST00000256343		TCGA	LD	OV	TCGA-24-2019-01A	ST3GAL2	chr16	70472852	-	CATSPERB	chr14	92047451	-
5UTR-3CDS	ENST00000380916	ENST00000380738		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000380916	ENST00000380733		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000380916	ENST00000380715		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000380916	ENST00000380716		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000380916	ENST00000397519		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-intron	ENST00000380916	ENST00000484265		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000497966	ENST00000380738		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000497966	ENST00000380733		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000497966	ENST00000380715		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000497966	ENST00000380716		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-3CDS	ENST00000497966	ENST00000397519		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
5UTR-intron	ENST00000497966	ENST00000484265		TCGA	LD	OV	TCGA-24-2019-01A	ZDHHC21	chr9	14680031	-	PSIP1	chr9	15472748	-
intron-3CDS	ENST00000374706	ENST00000381312		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
intron-intron	ENST00000374706	ENST00000381310		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
intron-intron	ENST00000374706	ENST00000381305		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
intron-intron	ENST00000374706	ENST00000469464		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5UTR-3CDS	ENST00000265375	ENST00000381312		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5UTR-intron	ENST00000265375	ENST00000381310		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5UTR-intron	ENST00000265375	ENST00000381305		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5UTR-intron	ENST00000265375	ENST00000469464		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
In-frame	ENST00000339497	ENST00000381312		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000339497	ENST00000381310		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000339497	ENST00000381305		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000339497	ENST00000469464		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
In-frame	ENST00000374704	ENST00000381312		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000374704	ENST00000381310		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000374704	ENST00000381305		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000374704	ENST00000469464		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
3UTR-3CDS	ENST00000492478	ENST00000381312		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
3UTR-intron	ENST00000492478	ENST00000381310		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
3UTR-intron	ENST00000492478	ENST00000381305		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
3UTR-intron	ENST00000492478	ENST00000469464		TCGA	LD	OV	TCGA-24-2020-01A	CCNY	chr10	35626135	+	ADARB2	chr10	1421355	-
5UTR-3CDS	ENST00000337195	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000337195	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000337195	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000337195	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000337195	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000531469	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000531469	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000531469	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000531469	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000494626	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000494626	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000494626	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000494626	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000411419	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000411419	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000411419	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000411419	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-3CDS	ENST00000476817	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000476817	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000476817	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5UTR-intron	ENST00000476817	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000309035	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000309035	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000309035	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000309035	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000404771		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000372440		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000372443		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000286628		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000286627		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000354353		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000404857		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-3CDS	ENST00000334808	ENST00000406533		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000334808	ENST00000484507		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000334808	ENST00000481070		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
intron-intron	ENST00000334808	ENST00000480683		TCGA	LD	OV	TCGA-24-2020-01A	CTBP2	chr10	126848888	-	KCNMA1	chr10	79011014	-
5CDS-intron	ENST00000497571	ENST00000474362		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000374721		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000489388		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000374726		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000429130		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000469949		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000460270		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000354759		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000489321		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000395895		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000374728		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000345491		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000333809		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000439705		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000337656		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000374734		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000479070		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000497571	ENST00000348787		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000361599		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000484283		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000395887		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000463314		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000342105		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000463960		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000487763		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000473940		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000488328		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000356917		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000488741		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000474931		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000468236		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000344351		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000497571	ENST00000490511		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000474362		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000374721		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000489388		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000374726		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000429130		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000469949		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000460270		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000354759		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000489321		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000395895		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000374728		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000345491		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000333809		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000439705		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000337656		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000374734		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000479070		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000542957	ENST00000348787		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000361599		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000484283		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000395887		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000463314		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000342105		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000463960		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000487763		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000473940		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000488328		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000356917		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000488741		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000474931		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000468236		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000344351		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000542957	ENST00000490511		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000474362		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000374721		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000489388		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000374726		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000429130		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000469949		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000460270		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000354759		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000489321		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000395895		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000374728		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000345491		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000333809		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000439705		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000337656		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000374734		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000479070		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-5UTR	ENST00000173785	ENST00000348787		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000361599		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000484283		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000395887		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000463314		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000342105		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000463960		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000487763		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000473940		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000488328		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000356917		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000488741		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000474931		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000468236		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000344351		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
intron-intron	ENST00000173785	ENST00000490511		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000474362		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000374721		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000489388		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000374726		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000429130		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000469949		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000460270		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000354759		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000489321		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000395895		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000374728		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000345491		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000333809		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000439705		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000337656		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000374734		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000479070		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-5UTR	ENST00000469435	ENST00000348787		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000361599		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000484283		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000395887		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000463314		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000342105		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000463960		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000487763		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000473940		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000488328		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000356917		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000488741		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000474931		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000468236		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000344351		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-intron	ENST00000469435	ENST00000490511		TCGA	LD	OV	TCGA-24-2020-01A	KLF6	chr10	3827105	-	CREM	chr10	35437296	+
5CDS-3UTR	ENST00000582888	ENST00000382349		TCGA	LD	OV	TCGA-24-2020-01A	OAZ1	chr19	2269743	+	ONECUT3	chr19	1776268	+
5CDS-3UTR	ENST00000602676	ENST00000382349		TCGA	LD	OV	TCGA-24-2020-01A	OAZ1	chr19	2269743	+	ONECUT3	chr19	1776268	+
5CDS-3UTR	ENST00000322297	ENST00000382349		TCGA	LD	OV	TCGA-24-2020-01A	OAZ1	chr19	2269743	+	ONECUT3	chr19	1776268	+
5CDS-3UTR	ENST00000583542	ENST00000382349		TCGA	LD	OV	TCGA-24-2020-01A	OAZ1	chr19	2269743	+	ONECUT3	chr19	1776268	+
intron-3UTR	ENST00000588673	ENST00000382349		TCGA	LD	OV	TCGA-24-2020-01A	OAZ1	chr19	2269743	+	ONECUT3	chr19	1776268	+
intron-3CDS	ENST00000470422	ENST00000264335		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000470422	ENST00000571732		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000470422	ENST00000573026		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000470422	ENST00000575977		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000470422	ENST00000498643		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000246043	ENST00000264335		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000246043	ENST00000571732		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000246043	ENST00000573026		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000246043	ENST00000575977		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000246043	ENST00000498643		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-3CDS	ENST00000377813	ENST00000264335		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-5UTR	ENST00000377813	ENST00000571732		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000377813	ENST00000573026		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000377813	ENST00000575977		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000377813	ENST00000498643		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-3CDS	ENST00000377807	ENST00000264335		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-5UTR	ENST00000377807	ENST00000571732		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000377807	ENST00000573026		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000377807	ENST00000575977		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000377807	ENST00000498643		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000360807	ENST00000264335		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000360807	ENST00000571732		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000360807	ENST00000573026		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000360807	ENST00000575977		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000360807	ENST00000498643		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-3CDS	ENST00000455029	ENST00000264335		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-5UTR	ENST00000455029	ENST00000571732		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000455029	ENST00000573026		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000455029	ENST00000575977		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5UTR-intron	ENST00000455029	ENST00000498643		TCGA	LD	OV	TCGA-24-2020-01A	RRBP1	chr20	17660644	-	YWHAE	chr17	1268352	-
5CDS-3UTR	ENST00000395601	ENST00000474476		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000395601	ENST00000371218		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000395601	ENST00000303721		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000395601	ENST00000371212		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-5UTR	ENST00000395601	ENST00000371210		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000517992	ENST00000474476		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000517992	ENST00000371218		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000517992	ENST00000303721		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-3UTR	ENST00000517992	ENST00000371212		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5CDS-5UTR	ENST00000517992	ENST00000371210		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5UTR-3UTR	ENST00000519177	ENST00000474476		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5UTR-3UTR	ENST00000519177	ENST00000371218		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5UTR-3UTR	ENST00000519177	ENST00000303721		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5UTR-3UTR	ENST00000519177	ENST00000371212		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
5UTR-5UTR	ENST00000519177	ENST00000371210		TCGA	LD	OV	TCGA-24-2020-01A	SNTB1	chr8	121823513	-	FGGY	chr1	60019796	+
intron-intron	ENST00000425528	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000425528	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000425528	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000441499	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000441499	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000441499	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000356861	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000356861	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000356861	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000450764	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000450764	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000450764	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000592287	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000592287	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000592287	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000588216	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000588216	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000588216	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000589956	ENST00000334482		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000589956	ENST00000301522		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
intron-intron	ENST00000589956	ENST00000435703		TCGA	LD	OV	TCGA-24-2020-01A	TNPO2	chr19	12826253	-	PRDX2	chr19	12910689	-
Frame-shit	ENST00000439040	ENST00000265239		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
Frame-shit	ENST00000439040	ENST00000455191		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
5CDS-intron	ENST00000439040	ENST00000453254		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
5CDS-intron	ENST00000439040	ENST00000480302		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
In-frame	ENST00000256031	ENST00000265239		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
In-frame	ENST00000256031	ENST00000455191		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
5CDS-intron	ENST00000256031	ENST00000453254		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
5CDS-intron	ENST00000256031	ENST00000480302		TCGA	LD	OV	TCGA-24-2023-01A	ATP13A3	chr3	194170874	-	IQCG	chr3	197619630	-
Frame-shit	ENST00000297537	ENST00000287878		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5CDS-intron	ENST00000297537	ENST00000418337		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5CDS-intron	ENST00000297537	ENST00000433631		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5CDS-intron	ENST00000297537	ENST00000492843		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5CDS-intron	ENST00000297537	ENST00000392801		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5CDS-5UTR	ENST00000297537	ENST00000461529		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5UTR-3CDS	ENST00000475831	ENST00000287878		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5UTR-intron	ENST00000475831	ENST00000418337		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5UTR-intron	ENST00000475831	ENST00000433631		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5UTR-intron	ENST00000475831	ENST00000492843		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5UTR-intron	ENST00000475831	ENST00000392801		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
5UTR-5UTR	ENST00000475831	ENST00000461529		TCGA	LD	OV	TCGA-24-2023-01A	GBX1	chr7	150864098	-	PRKAG2	chr7	151372723	-
Frame-shit	ENST00000437809	ENST00000368323		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000437809	ENST00000539040		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000437809	ENST00000368322		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000368331	ENST00000368323		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000368331	ENST00000539040		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000368331	ENST00000368322		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000271883	ENST00000368323		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000271883	ENST00000539040		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000271883	ENST00000368322		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000361040	ENST00000368323		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000361040	ENST00000539040		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000361040	ENST00000368322		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000471341	ENST00000368323		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000471341	ENST00000539040		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000471341	ENST00000368322		TCGA	LD	OV	TCGA-24-2023-01A	GON4L	chr1	155790397	-	RIT1	chr1	155874595	-
5CDS-5UTR	ENST00000316218	ENST00000490131		TCGA	LD	OV	TCGA-24-2023-01A	PDIA5	chr3	122829851	+	CASR	chr3	121972795	+
5CDS-5UTR	ENST00000316218	ENST00000498619		TCGA	LD	OV	TCGA-24-2023-01A	PDIA5	chr3	122829851	+	CASR	chr3	121972795	+
5CDS-intron	ENST00000316218	ENST00000296154		TCGA	LD	OV	TCGA-24-2023-01A	PDIA5	chr3	122829851	+	CASR	chr3	121972795	+
intron-5UTR	ENST00000467157	ENST00000490131		TCGA	LD	OV	TCGA-24-2023-01A	PDIA5	chr3	122829851	+	CASR	chr3	121972795	+
intron-5UTR	ENST00000467157	ENST00000498619		TCGA	LD	OV	TCGA-24-2023-01A	PDIA5	chr3	122829851	+	CASR	chr3	121972795	+
intron-intron	ENST00000467157	ENST00000296154		TCGA	LD	OV	TCGA-24-2023-01A	PDIA5	chr3	122829851	+	CASR	chr3	121972795	+
Frame-shit	ENST00000262741	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-5UTR	ENST00000262741	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
Frame-shit	ENST00000372006	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-5UTR	ENST00000372006	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
Frame-shit	ENST00000340332	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-5UTR	ENST00000340332	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
Frame-shit	ENST00000420542	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-5UTR	ENST00000420542	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
Frame-shit	ENST00000354242	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-5UTR	ENST00000354242	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
intron-3CDS	ENST00000540385	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
intron-5UTR	ENST00000540385	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
Frame-shit	ENST00000423209	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-5UTR	ENST00000423209	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
intron-3CDS	ENST00000488808	ENST00000240285		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
intron-5UTR	ENST00000488808	ENST00000519380		TCGA	LD	OV	TCGA-24-2023-01A	PIK3R3	chr1	46597519	-	RDH10	chr8	74209429	+
5CDS-intron	ENST00000424085	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000424085	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000257075	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000257075	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373747	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373747	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000426105	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000426105	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000440538	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000440538	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373741	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373741	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000423018	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000423018	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373742	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
5CDS-intron	ENST00000373742	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
intron-intron	ENST00000490546	ENST00000469100		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
intron-intron	ENST00000490546	ENST00000373477		TCGA	LD	OV	TCGA-24-2023-01A	PUM1	chr1	31501643	-	YARS	chr1	33276658	-
Frame-shit	ENST00000300896	ENST00000345330		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000300896	ENST00000351217		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
In-frame	ENST00000300896	ENST00000542234		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000300896	ENST00000562924		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000300896	ENST00000563691		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000300896	ENST00000545878		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000300896	ENST00000287226		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
5CDS-5UTR	ENST00000300896	ENST00000564551		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000345330		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000351217		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000542234		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000562924		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000563691		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000545878		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000592339	ENST00000287226		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-5UTR	ENST00000592339	ENST00000564551		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000393003	ENST00000345330		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000393003	ENST00000351217		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
In-frame	ENST00000393003	ENST00000542234		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000393003	ENST00000562924		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000393003	ENST00000563691		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000393003	ENST00000545878		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
Frame-shit	ENST00000393003	ENST00000287226		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
5CDS-5UTR	ENST00000393003	ENST00000564551		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000345330		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000351217		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000542234		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000562924		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000563691		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000545878		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-3CDS	ENST00000586881	ENST00000287226		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
intron-5UTR	ENST00000586881	ENST00000564551		TCGA	LD	OV	TCGA-24-2023-01A	USP32	chr17	58469243	-	NPTN	chr15	73866136	-
In-frame	ENST00000296657	ENST00000274181		TCGA	LD	OV	TCGA-24-2026-01A	ANKRD33B	chr5	10564945	+	ADAMTS16	chr5	5232481	+
5CDS-intron	ENST00000296657	ENST00000511368		TCGA	LD	OV	TCGA-24-2026-01A	ANKRD33B	chr5	10564945	+	ADAMTS16	chr5	5232481	+
5CDS-intron	ENST00000296657	ENST00000513709		TCGA	LD	OV	TCGA-24-2026-01A	ANKRD33B	chr5	10564945	+	ADAMTS16	chr5	5232481	+
intron-intron	ENST00000593699	ENST00000474210		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000593699	ENST00000394231		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000593699	ENST00000577810		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000372499	ENST00000474210		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000372499	ENST00000394231		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000372499	ENST00000577810		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000496424	ENST00000474210		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000496424	ENST00000394231		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000496424	ENST00000577810		TCGA	LD	OV	TCGA-24-2026-01A	C10orf11	chr10	77198252	+	MIEN1	chr17	37886544	-
intron-intron	ENST00000202028	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000202028	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000202028	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000202028	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000202028	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373950	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373950	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373950	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373950	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000373950	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000441639	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000441639	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000441639	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000441639	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000441639	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373946	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373946	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373946	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373946	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000373946	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000338074	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000338074	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000338074	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000338074	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000338074	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373941	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373941	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373941	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000373941	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000373941	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000479336	ENST00000374078		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000479336	ENST00000374077		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000479336	ENST00000374072		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-intron	ENST00000479336	ENST00000397416		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
intron-5UTR	ENST00000479336	ENST00000336695		TCGA	LD	OV	TCGA-24-2026-01A	EPB41L1	chr20	34796268	+	ROMO1	chr20	34287440	+
5CDS-5UTR	ENST00000343304	ENST00000371884		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5CDS-5UTR	ENST00000343304	ENST00000371883		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5CDS-5UTR	ENST00000343304	ENST00000294339		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5CDS-intron	ENST00000343304	ENST00000459729		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5UTR-5UTR	ENST00000472710	ENST00000371884		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5UTR-5UTR	ENST00000472710	ENST00000371883		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5UTR-5UTR	ENST00000472710	ENST00000294339		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5UTR-intron	ENST00000472710	ENST00000459729		TCGA	LD	OV	TCGA-24-2026-01A	LRRC41	chr1	46763235	-	TAL1	chr1	47695023	-
5UTR-3UTR	ENST00000610247	ENST00000525437		TCGA	LD	OV	TCGA-24-2026-01A	PILRB	chr7	99950746	+	SLC22A20	chr11	65009461	+
5UTR-3UTR	ENST00000452089	ENST00000525437		TCGA	LD	OV	TCGA-24-2026-01A	PILRB	chr7	99950746	+	SLC22A20	chr11	65009461	+
5UTR-3UTR	ENST00000448382	ENST00000525437		TCGA	LD	OV	TCGA-24-2026-01A	PILRB	chr7	99950746	+	SLC22A20	chr11	65009461	+
intron-3UTR	ENST00000444073	ENST00000525437		TCGA	LD	OV	TCGA-24-2026-01A	PILRB	chr7	99950746	+	SLC22A20	chr11	65009461	+
intron-3UTR	ENST00000609309	ENST00000525437		TCGA	LD	OV	TCGA-24-2026-01A	PILRB	chr7	99950746	+	SLC22A20	chr11	65009461	+
intron-3CDS	ENST00000533902	ENST00000354755		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000533902	ENST00000278487		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000533902	ENST00000445632		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000533902	ENST00000528728		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000280258	ENST00000354755		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000280258	ENST00000278487		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000280258	ENST00000445632		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000280258	ENST00000528728		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000441050	ENST00000354755		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000441050	ENST00000278487		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000441050	ENST00000445632		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
intron-3CDS	ENST00000441050	ENST00000528728		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
3UTR-3CDS	ENST00000531521	ENST00000354755		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
3UTR-3CDS	ENST00000531521	ENST00000278487		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
3UTR-3CDS	ENST00000531521	ENST00000445632		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
3UTR-3CDS	ENST00000531521	ENST00000528728		TCGA	LD	OV	TCGA-24-2026-01A	PRSS23	chr11	86661541	+	CCDC81	chr11	86118656	+
5UTR-3CDS	ENST00000374114	ENST00000374092		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-3CDS	ENST00000374114	ENST00000374085		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374114	ENST00000498084		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374114	ENST00000397425		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374114	ENST00000540053		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374114	ENST00000541387		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-intron	ENST00000374114	ENST00000306750		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-3CDS	ENST00000359646	ENST00000374092		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-3CDS	ENST00000359646	ENST00000374085		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000359646	ENST00000498084		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000359646	ENST00000397425		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000359646	ENST00000540053		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000359646	ENST00000541387		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-intron	ENST00000359646	ENST00000306750		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-3CDS	ENST00000374104	ENST00000374092		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-3CDS	ENST00000374104	ENST00000374085		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374104	ENST00000498084		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374104	ENST00000397425		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374104	ENST00000540053		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-5UTR	ENST00000374104	ENST00000541387		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
5UTR-intron	ENST00000374104	ENST00000306750		TCGA	LD	OV	TCGA-24-2026-01A	RBM12	chr20	34252682	-	NFS1	chr20	34257607	-
In-frame	ENST00000415083	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
In-frame	ENST00000415083	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000415083	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000542420	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000542420	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000542420	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000542743	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000542743	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000542743	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000539849	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
Frame-shit	ENST00000539849	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000539849	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
In-frame	ENST00000269137	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
In-frame	ENST00000269137	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000269137	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
In-frame	ENST00000545952	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
In-frame	ENST00000545952	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-intron	ENST00000545952	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
intron-3CDS	ENST00000585241	ENST00000284224		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
intron-3CDS	ENST00000585241	ENST00000581714		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
intron-intron	ENST00000585241	ENST00000580774		TCGA	LD	OV	TCGA-24-2026-01A	SS18	chr18	23619253	-	CHST9	chr18	24524330	-
5CDS-5UTR	ENST00000253251	ENST00000536656		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-5UTR	ENST00000253251	ENST00000377346		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-3UTR	ENST00000253251	ENST00000484851		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-intron	ENST00000253251	ENST00000361110		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-intron	ENST00000253251	ENST00000543390		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5UTR-5UTR	ENST00000377157	ENST00000536656		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5UTR-5UTR	ENST00000377157	ENST00000377346		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5UTR-3UTR	ENST00000377157	ENST00000484851		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5UTR-intron	ENST00000377157	ENST00000361110		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5UTR-intron	ENST00000377157	ENST00000543390		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-5UTR	ENST00000343090	ENST00000536656		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-5UTR	ENST00000343090	ENST00000377346		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-3UTR	ENST00000343090	ENST00000484851		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-intron	ENST00000343090	ENST00000361110		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-intron	ENST00000343090	ENST00000543390		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-5UTR	ENST00000377153	ENST00000536656		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-5UTR	ENST00000377153	ENST00000377346		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-3UTR	ENST00000377153	ENST00000484851		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-intron	ENST00000377153	ENST00000361110		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
5CDS-intron	ENST00000377153	ENST00000543390		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
intron-5UTR	ENST00000475795	ENST00000536656		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
intron-5UTR	ENST00000475795	ENST00000377346		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
intron-3UTR	ENST00000475795	ENST00000484851		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
intron-intron	ENST00000475795	ENST00000361110		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
intron-intron	ENST00000475795	ENST00000543390		TCGA	LD	OV	TCGA-24-2026-01A	UBE4B	chr1	10093752	+	PIK3CD	chr1	9751525	+
In-frame	ENST00000267202	ENST00000302349		TCGA	LD	OV	TCGA-24-2026-01A	VPS37B	chr12	123380499	-	MPHOSPH9	chr12	123665757	-
In-frame	ENST00000267202	ENST00000541076		TCGA	LD	OV	TCGA-24-2026-01A	VPS37B	chr12	123380499	-	MPHOSPH9	chr12	123665757	-
In-frame	ENST00000267202	ENST00000606320		TCGA	LD	OV	TCGA-24-2026-01A	VPS37B	chr12	123380499	-	MPHOSPH9	chr12	123665757	-
In-frame	ENST00000267202	ENST00000392425		TCGA	LD	OV	TCGA-24-2026-01A	VPS37B	chr12	123380499	-	MPHOSPH9	chr12	123665757	-
5CDS-intron	ENST00000267202	ENST00000539639		TCGA	LD	OV	TCGA-24-2026-01A	VPS37B	chr12	123380499	-	MPHOSPH9	chr12	123665757	-
In-frame	ENST00000359154	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000359154	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
In-frame	ENST00000448661	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000448661	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
In-frame	ENST00000569174	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000569174	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
In-frame	ENST00000356003	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000356003	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
intron-3CDS	ENST00000544162	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
intron-intron	ENST00000544162	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
intron-3CDS	ENST00000542271	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
intron-intron	ENST00000542271	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
intron-3CDS	ENST00000568684	ENST00000261778		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
intron-intron	ENST00000568684	ENST00000561931		TCGA	LD	OV	TCGA-24-2026-01A	WWP2	chr16	69820983	+	TANGO6	chr16	69007931	+
3UTR-3CDS	ENST00000558351	ENST00000487861		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000558351	ENST00000471583		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000558351	ENST00000487270		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000558351	ENST00000488612		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000558351	ENST00000390683		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
3UTR-3UTR	ENST00000558351	ENST00000469165		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000334660	ENST00000487861		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000334660	ENST00000471583		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000334660	ENST00000487270		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000334660	ENST00000488612		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000334660	ENST00000390683		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000334660	ENST00000469165		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000560397	ENST00000487861		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000560397	ENST00000471583		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000560397	ENST00000487270		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000560397	ENST00000488612		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
Frame-shit	ENST00000560397	ENST00000390683		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000560397	ENST00000469165		TCGA	LD	OV	TCGA-24-2027-01A	CHP1	chr15	41549188	+	RAD51B	chr14	68758601	+
5CDS-5UTR	ENST00000341500	ENST00000300853		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000341500	ENST00000423698		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-intron	ENST00000341500	ENST00000588738		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000341500	ENST00000340192		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000341500	ENST00000591636		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000341500	ENST00000589165		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000341500	ENST00000013807		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000302850	ENST00000300853		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000302850	ENST00000423698		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-intron	ENST00000302850	ENST00000588738		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000302850	ENST00000340192		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000302850	ENST00000591636		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000302850	ENST00000589165		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
5CDS-5UTR	ENST00000302850	ENST00000013807		TCGA	LD	OV	TCGA-24-2027-01A	INSR	chr19	7293803	-	ERCC1	chr19	45926639	-
In-frame	ENST00000244711	ENST00000355327		TCGA	LD	OV	TCGA-24-2027-01A	MEA1	chr6	42980664	-	THSD4	chr15	71704026	+
In-frame	ENST00000244711	ENST00000261862		TCGA	LD	OV	TCGA-24-2027-01A	MEA1	chr6	42980664	-	THSD4	chr15	71704026	+
5CDS-intron	ENST00000244711	ENST00000357769		TCGA	LD	OV	TCGA-24-2027-01A	MEA1	chr6	42980664	-	THSD4	chr15	71704026	+
5CDS-intron	ENST00000244711	ENST00000567838		TCGA	LD	OV	TCGA-24-2027-01A	MEA1	chr6	42980664	-	THSD4	chr15	71704026	+
5UTR-3CDS	ENST00000341724	ENST00000406610		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000341724	ENST00000462231		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000341724	ENST00000349953		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000341724	ENST00000358768		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000341724	ENST00000351153		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-intron	ENST00000341724	ENST00000488622		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000372004	ENST00000406610		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000372004	ENST00000462231		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000372004	ENST00000349953		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000372004	ENST00000358768		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000372004	ENST00000351153		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-intron	ENST00000372004	ENST00000488622		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371998	ENST00000406610		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371998	ENST00000462231		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371998	ENST00000349953		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371998	ENST00000358768		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371998	ENST00000351153		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-intron	ENST00000371998	ENST00000488622		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371997	ENST00000406610		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371997	ENST00000462231		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371997	ENST00000349953		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371997	ENST00000358768		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-3CDS	ENST00000371997	ENST00000351153		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
5UTR-intron	ENST00000371997	ENST00000488622		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000497292	ENST00000406610		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000497292	ENST00000462231		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000497292	ENST00000349953		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000497292	ENST00000358768		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
intron-3CDS	ENST00000497292	ENST00000351153		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
intron-intron	ENST00000497292	ENST00000488622		TCGA	LD	OV	TCGA-24-2027-01A	NCOA3	chr20	46212005	+	PARD3B	chr2	205829875	+
Frame-shit	ENST00000377304	ENST00000528446		TCGA	LD	OV	TCGA-24-2027-01A	NSUN6	chr10	18940058	-	ARMS2	chr10	124216423	+
intron-3CDS	ENST00000493816	ENST00000528446		TCGA	LD	OV	TCGA-24-2027-01A	NSUN6	chr10	18940058	-	ARMS2	chr10	124216423	+
5CDS-intron	ENST00000173229	ENST00000350250		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000173229	ENST00000508638		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000173229	ENST00000502810		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-3UTR	ENST00000173229	ENST00000508883		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000173229	ENST00000290431		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000538852	ENST00000350250		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000538852	ENST00000508638		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000538852	ENST00000502810		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-3UTR	ENST00000538852	ENST00000508883		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000538852	ENST00000290431		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000546090	ENST00000350250		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000546090	ENST00000508638		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000546090	ENST00000502810		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-3UTR	ENST00000546090	ENST00000508883		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000546090	ENST00000290431		TCGA	LD	OV	TCGA-24-2027-01A	NTN1	chr17	9086286	+	PKD2L2	chr5	137278073	+
intron-3CDS	ENST00000584601	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584601	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584601	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000584601	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000584601	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000406381	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000406381	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000406381	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000406381	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000406381	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000541774	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000541774	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000541774	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000541774	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000541774	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000445658	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000445658	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000445658	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000445658	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000445658	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000540147	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000540147	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5UTR-3CDS	ENST00000540147	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000540147	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5UTR-5UTR	ENST00000540147	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000584450	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000584450	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000584450	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000584450	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000584450	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000269571	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000269571	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000269571	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000269571	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000269571	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000578199	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000578199	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000578199	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000578199	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000578199	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000540042	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000540042	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000540042	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000540042	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000540042	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000584888	ENST00000394265		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000584888	ENST00000394267		TCGA	LD	OV	TCGA-24-2033-01A	ERBB2	chr17	37856564	+	PPP1R1B	chr17	37785423	+
5CDS-3UTR	ENST00000316939	ENST00000585548		TCGA	LD	OV	TCGA-24-2033-01A	GADD45GIP1	chr19	13067677	-	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000316939	ENST00000317060		TCGA	LD	OV	TCGA-24-2033-01A	GADD45GIP1	chr19	13067677	-	DAND5	chr19	13084203	+
Frame-shit	ENST00000359358	ENST00000581852		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000403303		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000383096		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000300227		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000579916		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000406524		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000583930		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000359358	ENST00000402325		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
5CDS-intron	ENST00000359358	ENST00000579947		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
5CDS-intron	ENST00000359358	ENST00000583550		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000581852		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000403303		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000383096		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000300227		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000579916		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000406524		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000583930		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
Frame-shit	ENST00000358095	ENST00000402325		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
5CDS-intron	ENST00000358095	ENST00000579947		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
5CDS-intron	ENST00000358095	ENST00000583550		TCGA	LD	OV	TCGA-24-2033-01A	KLHL14	chr18	30349608	-	CCDC178	chr18	30518055	-
5UTR-3CDS	ENST00000356341	ENST00000281038		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
5UTR-3CDS	ENST00000356341	ENST00000528850		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
intron-3CDS	ENST00000530617	ENST00000281038		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
intron-3CDS	ENST00000530617	ENST00000528850		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
5UTR-3CDS	ENST00000278568	ENST00000281038		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
5UTR-3CDS	ENST00000278568	ENST00000528850		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
intron-3CDS	ENST00000528203	ENST00000281038		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
intron-3CDS	ENST00000528203	ENST00000528850		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
intron-3CDS	ENST00000525542	ENST00000281038		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
intron-3CDS	ENST00000525542	ENST00000528850		TCGA	LD	OV	TCGA-24-2033-01A	PAK1	chr11	77184597	-	NARS2	chr11	78189729	-
Frame-shit	ENST00000528626	ENST00000430223		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000528626	ENST00000341166		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
5CDS-5UTR	ENST00000528626	ENST00000520545		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000524993	ENST00000430223		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000524993	ENST00000341166		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
5CDS-5UTR	ENST00000524993	ENST00000520545		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000430170	ENST00000430223		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000430170	ENST00000341166		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
5CDS-5UTR	ENST00000430170	ENST00000520545		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000445164	ENST00000430223		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000445164	ENST00000341166		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
5CDS-5UTR	ENST00000445164	ENST00000520545		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000526090	ENST00000430223		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
Frame-shit	ENST00000526090	ENST00000341166		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
5CDS-5UTR	ENST00000526090	ENST00000520545		TCGA	LD	OV	TCGA-24-2033-01A	TMPRSS13	chr11	117800002	-	NIPAL2	chr8	99248442	-
5UTR-3CDS	ENST00000274030	ENST00000307142		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
5UTR-3CDS	ENST00000274030	ENST00000448416		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
5UTR-3CDS	ENST00000274030	ENST00000429713		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
5UTR-3CDS	ENST00000274030	ENST00000434046		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000450251	ENST00000307142		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000450251	ENST00000448416		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000450251	ENST00000429713		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
intron-3CDS	ENST00000450251	ENST00000434046		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
3UTR-3CDS	ENST00000510737	ENST00000307142		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
3UTR-3CDS	ENST00000510737	ENST00000448416		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
3UTR-3CDS	ENST00000510737	ENST00000429713		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
3UTR-3CDS	ENST00000510737	ENST00000434046		TCGA	LD	OV	TCGA-24-2033-01A	USP53	chr4	120138828	+	SYNPO2	chr4	119944585	+
In-frame	ENST00000205402	ENST00000005259		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000205402	ENST00000465919		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000205402	ENST00000494086		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000205402	ENST00000445771		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000205402	ENST00000379117		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000205402	ENST00000379119		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000205402	ENST00000379121		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000537148	ENST00000005259		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000537148	ENST00000465919		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000537148	ENST00000494086		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000537148	ENST00000445771		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000537148	ENST00000379117		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000537148	ENST00000379119		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000537148	ENST00000379121		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000440410	ENST00000005259		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000440410	ENST00000465919		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000440410	ENST00000494086		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000440410	ENST00000445771		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000440410	ENST00000379117		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000440410	ENST00000379119		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000440410	ENST00000379121		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000437604	ENST00000005259		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
In-frame	ENST00000437604	ENST00000465919		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000437604	ENST00000494086		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000437604	ENST00000445771		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000437604	ENST00000379117		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000437604	ENST00000379119		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
5CDS-3UTR	ENST00000437604	ENST00000379121		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3CDS	ENST00000494441	ENST00000005259		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3CDS	ENST00000494441	ENST00000465919		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3UTR	ENST00000494441	ENST00000494086		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3UTR	ENST00000494441	ENST00000445771		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3UTR	ENST00000494441	ENST00000379117		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3UTR	ENST00000494441	ENST00000379119		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
intron-3UTR	ENST00000494441	ENST00000379121		TCGA	LD	OV	TCGA-24-2035-01A	DLD	chr7	107546813	+	BCAP29	chr7	107240842	+
Frame-shit	ENST00000414645	ENST00000518864		TCGA	LD	OV	TCGA-24-2035-01A	DPY19L4	chr8	95738669	+	SNTG1	chr8	51705231	+
In-frame	ENST00000414645	ENST00000522124		TCGA	LD	OV	TCGA-24-2035-01A	DPY19L4	chr8	95738669	+	SNTG1	chr8	51705231	+
In-frame	ENST00000414645	ENST00000517473		TCGA	LD	OV	TCGA-24-2035-01A	DPY19L4	chr8	95738669	+	SNTG1	chr8	51705231	+
Frame-shit	ENST00000414645	ENST00000276467		TCGA	LD	OV	TCGA-24-2035-01A	DPY19L4	chr8	95738669	+	SNTG1	chr8	51705231	+
5CDS-intron	ENST00000414645	ENST00000520697		TCGA	LD	OV	TCGA-24-2035-01A	DPY19L4	chr8	95738669	+	SNTG1	chr8	51705231	+
5CDS-intron	ENST00000375735	ENST00000536742		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000375735	ENST00000327554		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000375735	ENST00000539847		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000375735	ENST00000546345		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
intron-intron	ENST00000334267	ENST00000536742		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
intron-intron	ENST00000334267	ENST00000327554		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
intron-intron	ENST00000334267	ENST00000539847		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
intron-intron	ENST00000334267	ENST00000546345		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000398093	ENST00000536742		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000398093	ENST00000327554		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000398093	ENST00000539847		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
5CDS-intron	ENST00000398093	ENST00000546345		TCGA	LD	OV	TCGA-24-2036-01A	DYNC2H1	chr11	103130706	+	CCDC60	chr12	119942874	+
intron-3CDS	ENST00000269886	ENST00000569840		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-3CDS	ENST00000269886	ENST00000301618		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000269886	ENST00000565675		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000269886	ENST00000374998		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000269886	ENST00000428789		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-3CDS	ENST00000598564	ENST00000569840		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-3CDS	ENST00000598564	ENST00000301618		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000598564	ENST00000565675		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000598564	ENST00000374998		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000598564	ENST00000428789		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-3CDS	ENST00000417295	ENST00000569840		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-3CDS	ENST00000417295	ENST00000301618		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000417295	ENST00000565675		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000417295	ENST00000374998		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
intron-intron	ENST00000417295	ENST00000428789		TCGA	LD	OV	TCGA-24-2036-01A	SH3GL1	chr19	4361676	-	MGAT5B	chr17	74934070	+
Frame-shit	ENST00000442267	ENST00000265174		TCGA	LD	OV	TCGA-24-2261-01A	TBC1D9	chr4	141677070	-	PAPSS1	chr4	108535543	-
5CDS-intron	ENST00000442267	ENST00000511304		TCGA	LD	OV	TCGA-24-2261-01A	TBC1D9	chr4	141677070	-	PAPSS1	chr4	108535543	-
In-frame	ENST00000260408	ENST00000288235		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
5CDS-intron	ENST00000260408	ENST00000558814		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
intron-3CDS	ENST00000402627	ENST00000288235		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
intron-intron	ENST00000402627	ENST00000558814		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
intron-3CDS	ENST00000561288	ENST00000288235		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
intron-intron	ENST00000561288	ENST00000558814		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
intron-3CDS	ENST00000396140	ENST00000288235		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
intron-intron	ENST00000396140	ENST00000558814		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
5UTR-3CDS	ENST00000558733	ENST00000288235		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
5UTR-intron	ENST00000558733	ENST00000558814		TCGA	LD	OV	TCGA-24-2262-01A	ADAM10	chr15	59009776	-	MYO1E	chr15	59480415	-
In-frame	ENST00000551964	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000551964	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000551964	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000551964	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000551964	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000551964	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000339433	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000339433	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000339433	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000339433	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000339433	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000339433	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000359972	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000359972	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000359972	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000359972	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000359972	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000359972	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000333991	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000333991	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000333991	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000333991	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000333991	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000333991	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000357310	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000357310	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000357310	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000357310	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000357310	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000357310	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000552268	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000552268	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000552268	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000552268	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000552268	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000552268	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000550527	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000550527	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000550527	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000550527	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000550527	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000550527	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000547045	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000547045	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000547045	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000547045	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000547045	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000547045	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000549007	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
In-frame	ENST00000549007	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000549007	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000549007	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000549007	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000549007	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-3CDS	ENST00000547743	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-3CDS	ENST00000547743	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547743	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547743	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547743	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547743	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-3CDS	ENST00000547666	ENST00000556029		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-3CDS	ENST00000547666	ENST00000343315		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547666	ENST00000266732		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547666	ENST00000393053		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547666	ENST00000261210		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
intron-intron	ENST00000547666	ENST00000548223		TCGA	LD	OV	TCGA-24-2262-01A	APAF1	chr12	99056584	+	TMPO	chr12	98931253	+
5CDS-intron	ENST00000368346	ENST00000488498		TCGA	LD	OV	TCGA-24-2262-01A	ASH1L	chr1	155490891	-	C1orf61	chr1	156399911	-
5CDS-intron	ENST00000368346	ENST00000368243		TCGA	LD	OV	TCGA-24-2262-01A	ASH1L	chr1	155490891	-	C1orf61	chr1	156399911	-
5CDS-intron	ENST00000392403	ENST00000488498		TCGA	LD	OV	TCGA-24-2262-01A	ASH1L	chr1	155490891	-	C1orf61	chr1	156399911	-
5CDS-intron	ENST00000392403	ENST00000368243		TCGA	LD	OV	TCGA-24-2262-01A	ASH1L	chr1	155490891	-	C1orf61	chr1	156399911	-
5CDS-intron	ENST00000548830	ENST00000488498		TCGA	LD	OV	TCGA-24-2262-01A	ASH1L	chr1	155490891	-	C1orf61	chr1	156399911	-
5CDS-intron	ENST00000548830	ENST00000368243		TCGA	LD	OV	TCGA-24-2262-01A	ASH1L	chr1	155490891	-	C1orf61	chr1	156399911	-
In-frame	ENST00000005340	ENST00000312134		TCGA	LD	OV	TCGA-24-2262-01A	DVL2	chr17	7134047	-	CST6	chr11	65779657	+
In-frame	ENST00000575458	ENST00000312134		TCGA	LD	OV	TCGA-24-2262-01A	DVL2	chr17	7134047	-	CST6	chr11	65779657	+
intron-3CDS	ENST00000574642	ENST00000312134		TCGA	LD	OV	TCGA-24-2262-01A	DVL2	chr17	7134047	-	CST6	chr11	65779657	+
Frame-shit	ENST00000377809	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000402010	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000413835	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000377810	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000315032	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000508192	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000361128	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000350490	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000502399	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000509502	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000513765	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000408948	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000425897	ENST00000294244		TCGA	LD	OV	TCGA-24-2262-01A	MARK2	chr11	63672515	+	C11orf84	chr11	63594400	+
Frame-shit	ENST00000219252	ENST00000331351		TCGA	LD	OV	TCGA-24-2262-01A	POLR2C	chr16	57496990	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000219252	ENST00000475436		TCGA	LD	OV	TCGA-24-2262-01A	POLR2C	chr16	57496990	+	HS3ST4	chr16	26146933	+
3UTR-3CDS	ENST00000564651	ENST00000331351		TCGA	LD	OV	TCGA-24-2262-01A	POLR2C	chr16	57496990	+	HS3ST4	chr16	26146933	+
3UTR-3UTR	ENST00000564651	ENST00000475436		TCGA	LD	OV	TCGA-24-2262-01A	POLR2C	chr16	57496990	+	HS3ST4	chr16	26146933	+
In-frame	ENST00000283195	ENST00000376700		TCGA	LD	OV	TCGA-24-2262-01A	RANBP2	chr2	109375004	+	SULT1C3	chr2	108869801	+
In-frame	ENST00000283195	ENST00000329106		TCGA	LD	OV	TCGA-24-2262-01A	RANBP2	chr2	109375004	+	SULT1C3	chr2	108869801	+
5UTR-3CDS	ENST00000341084	ENST00000281156		TCGA	LD	OV	TCGA-24-2262-01A	RNF19A	chr8	101322095	-	KHDRBS2	chr6	62887217	-
intron-3CDS	ENST00000519449	ENST00000281156		TCGA	LD	OV	TCGA-24-2262-01A	RNF19A	chr8	101322095	-	KHDRBS2	chr6	62887217	-
intron-3CDS	ENST00000523255	ENST00000281156		TCGA	LD	OV	TCGA-24-2262-01A	RNF19A	chr8	101322095	-	KHDRBS2	chr6	62887217	-
Frame-shit	ENST00000301761	ENST00000347785		TCGA	LD	OV	TCGA-24-2262-01A	SDHAF2	chr11	61197654	+	CD5	chr11	60891356	+
Frame-shit	ENST00000542074	ENST00000347785		TCGA	LD	OV	TCGA-24-2262-01A	SDHAF2	chr11	61197654	+	CD5	chr11	60891356	+
Frame-shit	ENST00000537782	ENST00000347785		TCGA	LD	OV	TCGA-24-2262-01A	SDHAF2	chr11	61197654	+	CD5	chr11	60891356	+
Frame-shit	ENST00000543265	ENST00000347785		TCGA	LD	OV	TCGA-24-2262-01A	SDHAF2	chr11	61197654	+	CD5	chr11	60891356	+
Frame-shit	ENST00000534878	ENST00000347785		TCGA	LD	OV	TCGA-24-2262-01A	SDHAF2	chr11	61197654	+	CD5	chr11	60891356	+
5UTR-5UTR	ENST00000345057	ENST00000602377		TCGA	LD	OV	TCGA-24-2262-01A	TRADD	chr16	67193741	-	GFOD2	chr16	67719705	-
5UTR-5UTR	ENST00000345057	ENST00000268797		TCGA	LD	OV	TCGA-24-2262-01A	TRADD	chr16	67193741	-	GFOD2	chr16	67719705	-
intron-5UTR	ENST00000486556	ENST00000602377		TCGA	LD	OV	TCGA-24-2262-01A	TRADD	chr16	67193741	-	GFOD2	chr16	67719705	-
intron-5UTR	ENST00000486556	ENST00000268797		TCGA	LD	OV	TCGA-24-2262-01A	TRADD	chr16	67193741	-	GFOD2	chr16	67719705	-
5UTR-5UTR	ENST00000566104	ENST00000602377		TCGA	LD	OV	TCGA-24-2262-01A	TRADD	chr16	67193741	-	GFOD2	chr16	67719705	-
5UTR-5UTR	ENST00000566104	ENST00000268797		TCGA	LD	OV	TCGA-24-2262-01A	TRADD	chr16	67193741	-	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000319380	ENST00000389760		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
5CDS-5UTR	ENST00000319380	ENST00000313080		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
5CDS-5UTR	ENST00000319380	ENST00000591885		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
5CDS-5UTR	ENST00000319380	ENST00000592378		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
intron-5UTR	ENST00000587581	ENST00000389760		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
intron-5UTR	ENST00000587581	ENST00000313080		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
intron-5UTR	ENST00000587581	ENST00000591885		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
intron-5UTR	ENST00000587581	ENST00000592378		TCGA	LD	OV	TCGA-24-2262-01A	UBE2O	chr17	74448807	-	RHBDF2	chr17	74477627	-
In-frame	ENST00000561743	ENST00000550735		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
In-frame	ENST00000561743	ENST00000551404		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000561743	ENST00000547305		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000561743	ENST00000546394		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
In-frame	ENST00000219281	ENST00000550735		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
In-frame	ENST00000219281	ENST00000551404		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000219281	ENST00000547305		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000219281	ENST00000546394		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
In-frame	ENST00000539737	ENST00000550735		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
In-frame	ENST00000539737	ENST00000551404		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000539737	ENST00000547305		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000539737	ENST00000546394		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-3CDS	ENST00000423271	ENST00000550735		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-3CDS	ENST00000423271	ENST00000551404		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-intron	ENST00000423271	ENST00000547305		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-intron	ENST00000423271	ENST00000546394		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
3UTR-3CDS	ENST00000565662	ENST00000550735		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
3UTR-3CDS	ENST00000565662	ENST00000551404		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
3UTR-intron	ENST00000565662	ENST00000547305		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
3UTR-intron	ENST00000565662	ENST00000546394		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-3CDS	ENST00000563149	ENST00000550735		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-3CDS	ENST00000563149	ENST00000551404		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-intron	ENST00000563149	ENST00000547305		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
intron-intron	ENST00000563149	ENST00000546394		TCGA	LD	OV	TCGA-24-2262-01A	USB1	chr16	58051343	+	MAPKAPK5	chr12	112308889	+
5CDS-intron	ENST00000339859	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000339859	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000339859	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000339859	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000339859	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-3UTR	ENST00000339859	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000408019	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000408019	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000408019	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000408019	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000408019	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-3UTR	ENST00000408019	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000428547	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000428547	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000428547	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000428547	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000428547	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-3UTR	ENST00000428547	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000394811	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000394811	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000394811	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000394811	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000394811	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-3UTR	ENST00000394811	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000497106	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000497106	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000497106	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000497106	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-intron	ENST00000497106	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5UTR-3UTR	ENST00000497106	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
intron-intron	ENST00000422491	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
intron-intron	ENST00000422491	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
intron-intron	ENST00000422491	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
intron-intron	ENST00000422491	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
intron-intron	ENST00000422491	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
intron-3UTR	ENST00000422491	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000319786	ENST00000414722		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000319786	ENST00000435944		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000319786	ENST00000454857		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000319786	ENST00000439517		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-intron	ENST00000319786	ENST00000426021		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
5CDS-3UTR	ENST00000319786	ENST00000454781		TCGA	LD	OV	TCGA-24-2262-01A	USP54	chr10	75296027	-	CASC2	chr10	119857707	+
In-frame	ENST00000432306	ENST00000607778		TCGA	LD	OV	TCGA-24-2262-01A	VTI1A	chr10	114298089	+	GTF2H5	chr6	158613009	+
In-frame	ENST00000393077	ENST00000607778		TCGA	LD	OV	TCGA-24-2262-01A	VTI1A	chr10	114298089	+	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000483122	ENST00000607778		TCGA	LD	OV	TCGA-24-2262-01A	VTI1A	chr10	114298089	+	GTF2H5	chr6	158613009	+
intron-3CDS	ENST00000331555	ENST00000414007		TCGA	LD	OV	TCGA-24-2267-01A	C1orf186	chr1	206280922	+	SRGAP2	chr1	206603512	+
intron-5UTR	ENST00000331555	ENST00000419187		TCGA	LD	OV	TCGA-24-2267-01A	C1orf186	chr1	206280922	+	SRGAP2	chr1	206603512	+
intron-intron	ENST00000331555	ENST00000471256		TCGA	LD	OV	TCGA-24-2267-01A	C1orf186	chr1	206280922	+	SRGAP2	chr1	206603512	+
5UTR-3CDS	ENST00000469540	ENST00000414007		TCGA	LD	OV	TCGA-24-2267-01A	C1orf186	chr1	206280922	+	SRGAP2	chr1	206603512	+
5UTR-5UTR	ENST00000469540	ENST00000419187		TCGA	LD	OV	TCGA-24-2267-01A	C1orf186	chr1	206280922	+	SRGAP2	chr1	206603512	+
5UTR-intron	ENST00000469540	ENST00000471256		TCGA	LD	OV	TCGA-24-2267-01A	C1orf186	chr1	206280922	+	SRGAP2	chr1	206603512	+
In-frame	ENST00000376437	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
In-frame	ENST00000376437	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376437	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
In-frame	ENST00000376442	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
In-frame	ENST00000376442	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000376442	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
Frame-shit	ENST00000480966	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
Frame-shit	ENST00000480966	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
5CDS-intron	ENST00000480966	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000477800	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000477800	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000477800	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000548461	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000548461	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000548461	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000449861	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000449861	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000449861	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000417308	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000417308	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000417308	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000492529	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000492529	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000492529	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000451748	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000451748	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451748	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000424672	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000424672	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000424672	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000480637	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000480637	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000480637	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000453879	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000453879	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000453879	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000458094	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000458094	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000458094	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000462469	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000462469	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000462469	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000383576	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000383576	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383576	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000383577	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000383577	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000383577	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000485518	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000485518	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000485518	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000414052	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000414052	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000414052	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000451456	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000451456	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000451456	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000461170	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000461170	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000461170	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000421095	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000421095	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000421095	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000445379	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000445379	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000445379	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000481393	ENST00000376406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-3CDS	ENST00000481393	ENST00000376405		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000494654		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000427406		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000547874		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000551460		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000547700		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000481026		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000552522		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000420019		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000548112		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000550004		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000548103		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000473187		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000552474		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000420320		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000552263		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000551204		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000549428		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000495325		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000547681		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000449153		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000553048		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000546487		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000553196		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000494715		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000547353		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000383566		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000548827		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000552349		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000550408		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000481547		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000550688		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000440369		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000547047		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000548542		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000548248		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000482029		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000550500		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000435664		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000548433		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000551740		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000467476		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
intron-intron	ENST00000481393	ENST00000546539		TCGA	LD	OV	TCGA-24-2267-01A	DHX16	chr6	30627249	-	MDC1	chr6	30673875	-
Frame-shit	ENST00000357156	ENST00000374864		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000357156	ENST00000535650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000357156	ENST00000262650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5CDS-intron	ENST00000357156	ENST00000483727		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
3UTR-3CDS	ENST00000480759	ENST00000374864		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
3UTR-3CDS	ENST00000480759	ENST00000535650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
3UTR-3CDS	ENST00000480759	ENST00000262650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
3UTR-intron	ENST00000480759	ENST00000483727		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000417166	ENST00000374864		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000417166	ENST00000535650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000417166	ENST00000262650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5CDS-intron	ENST00000417166	ENST00000483727		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000300469	ENST00000374864		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000300469	ENST00000535650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
Frame-shit	ENST00000300469	ENST00000262650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5CDS-intron	ENST00000300469	ENST00000483727		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5UTR-3CDS	ENST00000374846	ENST00000374864		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5UTR-3CDS	ENST00000374846	ENST00000535650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5UTR-3CDS	ENST00000374846	ENST00000262650		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5UTR-intron	ENST00000374846	ENST00000483727		TCGA	LD	OV	TCGA-24-2267-01A	DYNLRB1	chr20	33104266	+	ITCH	chr20	33092136	+
5UTR-3CDS	ENST00000199940	ENST00000523492		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000199940	ENST00000286234		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000199940	ENST00000518057		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000360351	ENST00000523492		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000360351	ENST00000286234		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000360351	ENST00000518057		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000361559	ENST00000523492		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000361559	ENST00000286234		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000361559	ENST00000518057		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000392194	ENST00000523492		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000392194	ENST00000286234		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000392194	ENST00000518057		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000447185	ENST00000523492		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000447185	ENST00000286234		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000447185	ENST00000518057		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000475600	ENST00000523492		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3CDS	ENST00000475600	ENST00000286234		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
intron-3UTR	ENST00000475600	ENST00000518057		TCGA	LD	OV	TCGA-24-2267-01A	MAP2	chr2	210289000	+	DEPTOR	chr8	121061815	+
In-frame	ENST00000262948	ENST00000418988		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000262948	ENST00000555531		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000262948	ENST00000419365		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000262948	ENST00000524606		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000262948	ENST00000396394		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000262948	ENST00000396393		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000262948	ENST00000530457		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
Frame-shit	ENST00000394867	ENST00000418988		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000394867	ENST00000555531		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-3UTR	ENST00000394867	ENST00000419365		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000394867	ENST00000524606		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000394867	ENST00000396394		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000394867	ENST00000396393		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5CDS-5UTR	ENST00000394867	ENST00000530457		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-3CDS	ENST00000599345	ENST00000418988		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-3UTR	ENST00000599345	ENST00000555531		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-3UTR	ENST00000599345	ENST00000419365		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000599345	ENST00000524606		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000599345	ENST00000396394		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000599345	ENST00000396393		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
5UTR-5UTR	ENST00000599345	ENST00000530457		TCGA	LD	OV	TCGA-24-2267-01A	MAP2K2	chr19	4110507	-	PSMA1	chr11	14526794	-
In-frame	ENST00000393324	ENST00000389960		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000316356		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000528231		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000527523		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000524452		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000359152		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000354566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000525702		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000525423		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000529581		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000389958		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000393324	ENST00000533892		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
5CDS-intron	ENST00000393324	ENST00000528566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000389960		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000316356		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000528231		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000527523		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000524452		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000359152		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000354566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000525702		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000525423		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000529581		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000389958		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
In-frame	ENST00000359636	ENST00000533892		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
5CDS-intron	ENST00000359636	ENST00000528566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000389960		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000316356		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000528231		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000527523		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000524452		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000359152		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000354566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000525702		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000525423		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000529581		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000389958		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
Frame-shit	ENST00000543262	ENST00000533892		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
5CDS-intron	ENST00000543262	ENST00000528566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000389960		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000316356		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000528231		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000527523		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000524452		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000359152		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000354566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000525702		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000525423		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000529581		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000389958		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000323418	ENST00000533892		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-intron	ENST00000323418	ENST00000528566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000389960		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000316356		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000528231		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000527523		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000524452		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000359152		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000354566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000525702		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000525423		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000529581		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000389958		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-3CDS	ENST00000525957	ENST00000533892		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
intron-intron	ENST00000525957	ENST00000528566		TCGA	LD	OV	TCGA-24-2267-01A	ME3	chr11	86382804	-	SYTL2	chr11	85411636	-
5UTR-3CDS	ENST00000402198	ENST00000389617		TCGA	LD	OV	TCGA-24-2267-01A	SETD5	chr3	9439661	+	GXYLT2	chr3	72971355	+
5UTR-3CDS	ENST00000402466	ENST00000389617		TCGA	LD	OV	TCGA-24-2267-01A	SETD5	chr3	9439661	+	GXYLT2	chr3	72971355	+
5UTR-3CDS	ENST00000406341	ENST00000389617		TCGA	LD	OV	TCGA-24-2267-01A	SETD5	chr3	9439661	+	GXYLT2	chr3	72971355	+
intron-3CDS	ENST00000407969	ENST00000389617		TCGA	LD	OV	TCGA-24-2267-01A	SETD5	chr3	9439661	+	GXYLT2	chr3	72971355	+
intron-3CDS	ENST00000302463	ENST00000389617		TCGA	LD	OV	TCGA-24-2267-01A	SETD5	chr3	9439661	+	GXYLT2	chr3	72971355	+
intron-3CDS	ENST00000488236	ENST00000389617		TCGA	LD	OV	TCGA-24-2267-01A	SETD5	chr3	9439661	+	GXYLT2	chr3	72971355	+
In-frame	ENST00000450966	ENST00000368467		TCGA	LD	OV	TCGA-24-2267-01A	USP40	chr2	234449308	-	PMVK	chr1	154898959	-
In-frame	ENST00000251722	ENST00000368467		TCGA	LD	OV	TCGA-24-2267-01A	USP40	chr2	234449308	-	PMVK	chr1	154898959	-
In-frame	ENST00000427112	ENST00000368467		TCGA	LD	OV	TCGA-24-2267-01A	USP40	chr2	234449308	-	PMVK	chr1	154898959	-
intron-3CDS	ENST00000496298	ENST00000368467		TCGA	LD	OV	TCGA-24-2267-01A	USP40	chr2	234449308	-	PMVK	chr1	154898959	-
intron-3CDS	ENST00000409945	ENST00000368467		TCGA	LD	OV	TCGA-24-2267-01A	USP40	chr2	234449308	-	PMVK	chr1	154898959	-
intron-3CDS	ENST00000443711	ENST00000368467		TCGA	LD	OV	TCGA-24-2267-01A	USP40	chr2	234449308	-	PMVK	chr1	154898959	-
5CDS-intron	ENST00000311713	ENST00000384756		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000364799		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000384693		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000383926		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000516331		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000384706		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000363981		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000384147		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000311713	ENST00000365607		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000384756		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000364799		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000384693		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000383926		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000516331		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000384706		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000363981		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000384147		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000278856	ENST00000365607		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000384756		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000364799		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000384693		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000383926		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000516331		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000384706		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000363981		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000384147		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000529106	ENST00000365607		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000384756		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000364799		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000384693		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000383926		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000516331		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000384706		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000363981		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000384147		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525239	ENST00000365607		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000384756		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000364799		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000384693		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000383926		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000516331		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000384706		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000363981		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000384147		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-intron	ENST00000525752	ENST00000365607		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000384756		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000364799		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000384693		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000383926		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000516331		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000384706		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000363981		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000384147		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5UTR-intron	ENST00000540620	ENST00000365607		TCGA	LD	OV	TCGA-24-2267-01A	WDR74	chr11	62606586	-	SNHG1	chr11	62621536	-
5CDS-5UTR	ENST00000338458	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
5CDS-5UTR	ENST00000338458	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000496106	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000496106	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000498517	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000498517	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000296315	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000296315	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000413728	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000413728	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000497267	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000497267	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000495373	ENST00000404279		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
intron-5UTR	ENST00000495373	ENST00000585527		TCGA	LD	OV	TCGA-24-2271-01A	ARHGEF3	chr3	57069116	-	LINGO3	chr19	2291821	-
5CDS-intron	ENST00000521166	ENST00000328599		TCGA	LD	OV	TCGA-24-2271-01A	FAM91A1	chr8	124792782	+	TRMT12	chr8	125474268	+
5CDS-3UTR	ENST00000521166	ENST00000521443		TCGA	LD	OV	TCGA-24-2271-01A	FAM91A1	chr8	124792782	+	TRMT12	chr8	125474268	+
5CDS-intron	ENST00000334705	ENST00000328599		TCGA	LD	OV	TCGA-24-2271-01A	FAM91A1	chr8	124792782	+	TRMT12	chr8	125474268	+
5CDS-3UTR	ENST00000334705	ENST00000521443		TCGA	LD	OV	TCGA-24-2271-01A	FAM91A1	chr8	124792782	+	TRMT12	chr8	125474268	+
intron-3CDS	ENST00000264674	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000264674	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000264674	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000264674	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000392736	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000392736	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000392736	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000392736	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000464456	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000464456	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000464456	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000464456	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000472280	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000472280	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000472280	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000472280	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
Frame-shit	ENST00000494292	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
Frame-shit	ENST00000494292	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
Frame-shit	ENST00000494292	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
5CDS-5UTR	ENST00000494292	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000468789	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000468789	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000468789	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000468789	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000460814	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000460814	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000460814	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000460814	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000433243	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000433243	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-3CDS	ENST00000433243	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
intron-5UTR	ENST00000433243	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
5UTR-3CDS	ENST00000485957	ENST00000316428		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
5UTR-3CDS	ENST00000485957	ENST00000264676		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
5UTR-3CDS	ENST00000485957	ENST00000523069		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
5UTR-5UTR	ENST00000485957	ENST00000397805		TCGA	LD	OV	TCGA-24-2271-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169574660	-
Frame-shit	ENST00000377298	ENST00000357949		TCGA	LD	OV	TCGA-24-2280-01A	CLSTN1	chr1	9883701	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000361311	ENST00000357949		TCGA	LD	OV	TCGA-24-2280-01A	CLSTN1	chr1	9883701	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000377288	ENST00000357949		TCGA	LD	OV	TCGA-24-2280-01A	CLSTN1	chr1	9883701	-	SERTAD1	chr19	40929453	-
intron-3CDS	ENST00000477264	ENST00000357949		TCGA	LD	OV	TCGA-24-2280-01A	CLSTN1	chr1	9883701	-	SERTAD1	chr19	40929453	-
Frame-shit	ENST00000336431	ENST00000262866		TCGA	LD	OV	TCGA-24-2280-01A	GGT7	chr20	33460450	-	SLA2	chr20	35243777	-
Frame-shit	ENST00000336431	ENST00000360672		TCGA	LD	OV	TCGA-24-2280-01A	GGT7	chr20	33460450	-	SLA2	chr20	35243777	-
intron-3CDS	ENST00000469018	ENST00000262866		TCGA	LD	OV	TCGA-24-2280-01A	GGT7	chr20	33460450	-	SLA2	chr20	35243777	-
intron-3CDS	ENST00000469018	ENST00000360672		TCGA	LD	OV	TCGA-24-2280-01A	GGT7	chr20	33460450	-	SLA2	chr20	35243777	-
Frame-shit	ENST00000476258	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000476258	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000476258	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000476258	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-3UTR	ENST00000476258	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
Frame-shit	ENST00000405458	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000405458	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000405458	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000405458	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-3UTR	ENST00000405458	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
In-frame	ENST00000409753	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000409753	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000409753	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000409753	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-3UTR	ENST00000409753	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
In-frame	ENST00000482348	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000482348	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000482348	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000482348	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-3UTR	ENST00000482348	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-3CDS	ENST00000356033	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000356033	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000356033	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000356033	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-3UTR	ENST00000356033	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
In-frame	ENST00000470924	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000470924	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000470924	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000470924	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-3UTR	ENST00000470924	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
Frame-shit	ENST00000481647	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000481647	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000481647	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-intron	ENST00000481647	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
5CDS-3UTR	ENST00000481647	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-3CDS	ENST00000392566	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000392566	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000392566	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000392566	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-3UTR	ENST00000392566	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
3UTR-3CDS	ENST00000581874	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
3UTR-intron	ENST00000581874	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
3UTR-intron	ENST00000581874	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
3UTR-intron	ENST00000581874	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
3UTR-3UTR	ENST00000581874	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-3CDS	ENST00000465454	ENST00000581078		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000465454	ENST00000582136		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000465454	ENST00000245543		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-intron	ENST00000465454	ENST00000584947		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
intron-3UTR	ENST00000465454	ENST00000579096		TCGA	LD	OV	TCGA-24-2280-01A	HN1	chr17	73142761	-	ARMC7	chr17	73124772	+
Frame-shit	ENST00000405486	ENST00000216259		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
5CDS-intron	ENST00000405486	ENST00000466645		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
Frame-shit	ENST00000356244	ENST00000216259		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
5CDS-intron	ENST00000356244	ENST00000466645		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
In-frame	ENST00000455915	ENST00000216259		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
5CDS-intron	ENST00000455915	ENST00000466645		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
In-frame	ENST00000407260	ENST00000216259		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
5CDS-intron	ENST00000407260	ENST00000466645		TCGA	LD	OV	TCGA-24-2280-01A	RANGAP1	chr22	41664101	-	PMM1	chr22	41974885	-
intron-intron	ENST00000415061	ENST00000252482		TCGA	LD	OV	TCGA-24-2280-01A	RDH13	chr19	55553675	-	EXOC3L2	chr19	45737973	-
intron-intron	ENST00000415061	ENST00000413988		TCGA	LD	OV	TCGA-24-2280-01A	RDH13	chr19	55553675	-	EXOC3L2	chr19	45737973	-
intron-intron	ENST00000396247	ENST00000252482		TCGA	LD	OV	TCGA-24-2280-01A	RDH13	chr19	55553675	-	EXOC3L2	chr19	45737973	-
intron-intron	ENST00000396247	ENST00000413988		TCGA	LD	OV	TCGA-24-2280-01A	RDH13	chr19	55553675	-	EXOC3L2	chr19	45737973	-
intron-intron	ENST00000592423	ENST00000252482		TCGA	LD	OV	TCGA-24-2280-01A	RDH13	chr19	55553675	-	EXOC3L2	chr19	45737973	-
intron-intron	ENST00000592423	ENST00000413988		TCGA	LD	OV	TCGA-24-2280-01A	RDH13	chr19	55553675	-	EXOC3L2	chr19	45737973	-
intron-intron	ENST00000430069	ENST00000471014		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
intron-intron	ENST00000430069	ENST00000405570		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
intron-intron	ENST00000430069	ENST00000396183		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
intron-intron	ENST00000430069	ENST00000349496		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
intron-intron	ENST00000430069	ENST00000453024		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
intron-intron	ENST00000430069	ENST00000396185		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
5UTR-intron	ENST00000457928	ENST00000471014		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
5UTR-intron	ENST00000457928	ENST00000405570		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
5UTR-intron	ENST00000457928	ENST00000396183		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
5UTR-intron	ENST00000457928	ENST00000349496		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
5UTR-intron	ENST00000457928	ENST00000453024		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
5UTR-intron	ENST00000457928	ENST00000396185		TCGA	LD	OV	TCGA-24-2280-01A	TBL1XR1	chr3	176914909	-	CTNNB1	chr3	41274832	+
In-frame	ENST00000524892	ENST00000392332		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
In-frame	ENST00000524892	ENST00000359678		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
In-frame	ENST00000524892	ENST00000410045		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
5CDS-5UTR	ENST00000524892	ENST00000486981		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
In-frame	ENST00000298815	ENST00000392332		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
In-frame	ENST00000298815	ENST00000359678		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
In-frame	ENST00000298815	ENST00000410045		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
5CDS-5UTR	ENST00000298815	ENST00000486981		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
3UTR-3CDS	ENST00000534060	ENST00000392332		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
3UTR-3CDS	ENST00000534060	ENST00000359678		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
3UTR-3CDS	ENST00000534060	ENST00000410045		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
3UTR-5UTR	ENST00000534060	ENST00000486981		TCGA	LD	OV	TCGA-24-2281-01A	ARHGAP42	chr11	100665897	+	HIBCH	chr2	191077801	-
Frame-shit	ENST00000392332	ENST00000361725		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
In-frame	ENST00000392332	ENST00000341900		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
5CDS-3UTR	ENST00000392332	ENST00000550686		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
Frame-shit	ENST00000359678	ENST00000361725		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
In-frame	ENST00000359678	ENST00000341900		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
5CDS-3UTR	ENST00000359678	ENST00000550686		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
intron-3CDS	ENST00000410045	ENST00000361725		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
intron-3CDS	ENST00000410045	ENST00000341900		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
intron-3UTR	ENST00000410045	ENST00000550686		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
intron-3CDS	ENST00000486981	ENST00000361725		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
intron-3CDS	ENST00000486981	ENST00000341900		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
intron-3UTR	ENST00000486981	ENST00000550686		TCGA	LD	OV	TCGA-24-2281-01A	HIBCH	chr2	191159272	-	DLX1	chr2	172952731	+
In-frame	ENST00000221419	ENST00000334678		TCGA	LD	OV	TCGA-24-2281-01A	HNRNPL	chr19	39334482	-	RPS19BP1	chr22	39925922	-
Frame-shit	ENST00000600873	ENST00000334678		TCGA	LD	OV	TCGA-24-2281-01A	HNRNPL	chr19	39334482	-	RPS19BP1	chr22	39925922	-
5UTR-3CDS	ENST00000240185	ENST00000378756		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
5UTR-3CDS	ENST00000240185	ENST00000378755		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
5UTR-3CDS	ENST00000240185	ENST00000536055		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
5UTR-3CDS	ENST00000439080	ENST00000378756		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
5UTR-3CDS	ENST00000439080	ENST00000378755		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
5UTR-3CDS	ENST00000439080	ENST00000536055		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
intron-3CDS	ENST00000315091	ENST00000378756		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
intron-3CDS	ENST00000315091	ENST00000378755		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
intron-3CDS	ENST00000315091	ENST00000536055		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
intron-3CDS	ENST00000480464	ENST00000378756		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
intron-3CDS	ENST00000480464	ENST00000378755		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
intron-3CDS	ENST00000480464	ENST00000536055		TCGA	LD	OV	TCGA-24-2281-01A	TARDBP	chr1	11072800	+	ATAD3A	chr1	1469306	+
3UTR-3CDS	ENST00000593699	ENST00000318217		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
3UTR-3CDS	ENST00000593699	ENST00000394649		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
3UTR-intron	ENST00000593699	ENST00000579584		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
3UTR-intron	ENST00000593699	ENST00000584232		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
3UTR-intron	ENST00000593699	ENST00000583621		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
In-frame	ENST00000372499	ENST00000318217		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000372499	ENST00000394649		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000372499	ENST00000579584		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000372499	ENST00000584232		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000372499	ENST00000583621		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000496424	ENST00000318217		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000496424	ENST00000394649		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000496424	ENST00000579584		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000496424	ENST00000584232		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000496424	ENST00000583621		TCGA	LD	OV	TCGA-24-2288-01A	C10orf11	chr10	77818541	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000378847	ENST00000380629		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-5UTR	ENST00000378847	ENST00000523515		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-5UTR	ENST00000378847	ENST00000520409		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-5UTR	ENST00000378847	ENST00000518611		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-intron	ENST00000378847	ENST00000521254		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
3UTR-3CDS	ENST00000487696	ENST00000380629		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
3UTR-5UTR	ENST00000487696	ENST00000523515		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
3UTR-5UTR	ENST00000487696	ENST00000520409		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
3UTR-5UTR	ENST00000487696	ENST00000518611		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
3UTR-intron	ENST00000487696	ENST00000521254		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
Frame-shit	ENST00000378845	ENST00000380629		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-5UTR	ENST00000378845	ENST00000523515		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-5UTR	ENST00000378845	ENST00000520409		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-5UTR	ENST00000378845	ENST00000518611		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
5CDS-intron	ENST00000378845	ENST00000521254		TCGA	LD	OV	TCGA-24-2288-01A	CAMK1D	chr10	12391909	+	BNIP3L	chr8	26248759	+
intron-3UTR	ENST00000266397	ENST00000381395		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000266397	ENST00000381406		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000266397	ENST00000416167		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000266397	ENST00000300632		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000266397	ENST00000434045		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000266397	ENST00000381392		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000266397	ENST00000381389		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000266397	ENST00000418738		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000540097	ENST00000381395		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000540097	ENST00000381406		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000540097	ENST00000416167		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000540097	ENST00000300632		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000540097	ENST00000434045		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000540097	ENST00000381392		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000540097	ENST00000381389		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000540097	ENST00000418738		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000544881	ENST00000381395		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000544881	ENST00000381406		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000544881	ENST00000416167		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-3UTR	ENST00000544881	ENST00000300632		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000544881	ENST00000434045		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000544881	ENST00000381392		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000544881	ENST00000381389		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
intron-intron	ENST00000544881	ENST00000418738		TCGA	LD	OV	TCGA-24-2288-01A	ERP27	chr12	15067557	-	IGF2	chr11	2153091	-
5UTR-3CDS	ENST00000341724	ENST00000544974		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000341724	ENST00000560369		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000341724	ENST00000260382		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000341724	ENST00000443425		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000341724	ENST00000560691		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000341724	ENST00000436542		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000341724	ENST00000560158		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000372004	ENST00000544974		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000372004	ENST00000560369		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000372004	ENST00000260382		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000372004	ENST00000443425		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000372004	ENST00000560691		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000372004	ENST00000436542		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000372004	ENST00000560158		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371998	ENST00000544974		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371998	ENST00000560369		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371998	ENST00000260382		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371998	ENST00000443425		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371998	ENST00000560691		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000371998	ENST00000436542		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000371998	ENST00000560158		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371997	ENST00000544974		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371997	ENST00000560369		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371997	ENST00000260382		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371997	ENST00000443425		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3CDS	ENST00000371997	ENST00000560691		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000371997	ENST00000436542		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
5UTR-3UTR	ENST00000371997	ENST00000560158		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3CDS	ENST00000497292	ENST00000544974		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3CDS	ENST00000497292	ENST00000560369		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3CDS	ENST00000497292	ENST00000260382		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3CDS	ENST00000497292	ENST00000443425		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3CDS	ENST00000497292	ENST00000560691		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3UTR	ENST00000497292	ENST00000436542		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
intron-3UTR	ENST00000497292	ENST00000560158		TCGA	LD	OV	TCGA-24-2288-01A	NCOA3	chr20	46130763	+	LRRC49	chr15	71302146	+
Frame-shit	ENST00000374012	ENST00000202028		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000374012	ENST00000373950		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000374012	ENST00000441639		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000374012	ENST00000373946		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000374012	ENST00000338074		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000374012	ENST00000373941		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
5CDS-intron	ENST00000374012	ENST00000479336		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000439301	ENST00000202028		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000439301	ENST00000373950		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000439301	ENST00000441639		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000439301	ENST00000373946		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000439301	ENST00000338074		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
Frame-shit	ENST00000439301	ENST00000373941		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
5CDS-intron	ENST00000439301	ENST00000479336		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-3CDS	ENST00000481202	ENST00000202028		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-3CDS	ENST00000481202	ENST00000373950		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-3CDS	ENST00000481202	ENST00000441639		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-3CDS	ENST00000481202	ENST00000373946		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-3CDS	ENST00000481202	ENST00000338074		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-3CDS	ENST00000481202	ENST00000373941		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
3UTR-intron	ENST00000481202	ENST00000479336		TCGA	LD	OV	TCGA-24-2288-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34785781	+
In-frame	ENST00000380737	ENST00000263035		TCGA	LD	OV	TCGA-24-2288-01A	PPP2R2A	chr8	26151256	+	DHTKD1	chr10	12123471	+
5CDS-intron	ENST00000380737	ENST00000465617		TCGA	LD	OV	TCGA-24-2288-01A	PPP2R2A	chr8	26151256	+	DHTKD1	chr10	12123471	+
In-frame	ENST00000315985	ENST00000263035		TCGA	LD	OV	TCGA-24-2288-01A	PPP2R2A	chr8	26151256	+	DHTKD1	chr10	12123471	+
5CDS-intron	ENST00000315985	ENST00000465617		TCGA	LD	OV	TCGA-24-2288-01A	PPP2R2A	chr8	26151256	+	DHTKD1	chr10	12123471	+
3UTR-3CDS	ENST00000523473	ENST00000263035		TCGA	LD	OV	TCGA-24-2288-01A	PPP2R2A	chr8	26151256	+	DHTKD1	chr10	12123471	+
3UTR-intron	ENST00000523473	ENST00000465617		TCGA	LD	OV	TCGA-24-2288-01A	PPP2R2A	chr8	26151256	+	DHTKD1	chr10	12123471	+
5UTR-5UTR	ENST00000402198	ENST00000455015		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402198	ENST00000336832		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402198	ENST00000423850		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402198	ENST00000383817		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402198	ENST00000430427		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-intron	ENST00000402198	ENST00000443115		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402466	ENST00000455015		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402466	ENST00000336832		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402466	ENST00000423850		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402466	ENST00000383817		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-5UTR	ENST00000402466	ENST00000430427		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
5UTR-intron	ENST00000402466	ENST00000443115		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000406341	ENST00000455015		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000406341	ENST00000336832		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000406341	ENST00000423850		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000406341	ENST00000383817		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000406341	ENST00000430427		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-intron	ENST00000406341	ENST00000443115		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000407969	ENST00000455015		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000407969	ENST00000336832		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000407969	ENST00000423850		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000407969	ENST00000383817		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000407969	ENST00000430427		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-intron	ENST00000407969	ENST00000443115		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000302463	ENST00000455015		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000302463	ENST00000336832		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000302463	ENST00000423850		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000302463	ENST00000383817		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000302463	ENST00000430427		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-intron	ENST00000302463	ENST00000443115		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000488236	ENST00000455015		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000488236	ENST00000336832		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000488236	ENST00000423850		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000488236	ENST00000383817		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-5UTR	ENST00000488236	ENST00000430427		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
intron-intron	ENST00000488236	ENST00000443115		TCGA	LD	OV	TCGA-24-2288-01A	SETD5	chr3	9466210	+	CIDEC	chr3	9920195	-
3UTR-3CDS	ENST00000310358	ENST00000548724		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-3CDS	ENST00000310358	ENST00000396700		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-3CDS	ENST00000310358	ENST00000323944		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-3CDS	ENST00000310358	ENST00000419632		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-3CDS	ENST00000310358	ENST00000546511		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-3CDS	ENST00000310358	ENST00000550887		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-3CDS	ENST00000310358	ENST00000358326		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
3UTR-intron	ENST00000310358	ENST00000548369		TCGA	LD	OV	TCGA-24-2288-01A	SPON1	chr11	13984689	+	STXBP6	chr14	25326363	-
intron-5UTR	ENST00000311160	ENST00000473723		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000311160	ENST00000297325		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000311160	ENST00000412142		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000311160	ENST00000395572		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000311160	ENST00000453192		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000355730	ENST00000473723		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000355730	ENST00000297325		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000355730	ENST00000412142		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000355730	ENST00000395572		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000355730	ENST00000453192		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000398879	ENST00000473723		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000398879	ENST00000297325		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000398879	ENST00000412142		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000398879	ENST00000395572		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000398879	ENST00000453192		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000442536	ENST00000473723		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000442536	ENST00000297325		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000442536	ENST00000412142		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000442536	ENST00000395572		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000442536	ENST00000453192		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000458317	ENST00000473723		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000458317	ENST00000297325		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000458317	ENST00000412142		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000458317	ENST00000395572		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000458317	ENST00000453192		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000474346	ENST00000473723		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000474346	ENST00000297325		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000474346	ENST00000412142		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000474346	ENST00000395572		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
intron-5UTR	ENST00000474346	ENST00000453192		TCGA	LD	OV	TCGA-24-2288-01A	TNS3	chr7	47622025	-	SUN3	chr7	48035743	-
In-frame	ENST00000333229	ENST00000400454		TCGA	LD	OV	TCGA-24-2289-01A	BRWD1	chr21	40641825	-	DSCAM	chr21	41385313	-
In-frame	ENST00000342449	ENST00000400454		TCGA	LD	OV	TCGA-24-2289-01A	BRWD1	chr21	40641825	-	DSCAM	chr21	41385313	-
In-frame	ENST00000380800	ENST00000400454		TCGA	LD	OV	TCGA-24-2289-01A	BRWD1	chr21	40641825	-	DSCAM	chr21	41385313	-
intron-3CDS	ENST00000341322	ENST00000400454		TCGA	LD	OV	TCGA-24-2289-01A	BRWD1	chr21	40641825	-	DSCAM	chr21	41385313	-
intron-3CDS	ENST00000470108	ENST00000400454		TCGA	LD	OV	TCGA-24-2289-01A	BRWD1	chr21	40641825	-	DSCAM	chr21	41385313	-
Frame-shit	ENST00000395290	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395290	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395290	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395290	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000358597	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000358597	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000358597	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000358597	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395292	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395292	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395292	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395292	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
In-frame	ENST00000310513	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
In-frame	ENST00000310513	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
In-frame	ENST00000310513	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
In-frame	ENST00000310513	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000361904	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000361904	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000361904	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000361904	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000539455	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000539455	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000539455	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000539455	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000531165	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000531165	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000531165	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000531165	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000532048	ENST00000397936		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000532048	ENST00000541094		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000532048	ENST00000398521		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000532048	ENST00000398523		TCGA	LD	OV	TCGA-24-2289-01A	CELF1	chr11	47508302	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000395785	ENST00000378402		TCGA	LD	OV	TCGA-24-2289-01A	EBAG9	chr8	110566172	+	PKHD1L1	chr8	110539013	+
3UTR-3CDS	ENST00000529502	ENST00000378402		TCGA	LD	OV	TCGA-24-2289-01A	EBAG9	chr8	110566172	+	PKHD1L1	chr8	110539013	+
Frame-shit	ENST00000337573	ENST00000378402		TCGA	LD	OV	TCGA-24-2289-01A	EBAG9	chr8	110566172	+	PKHD1L1	chr8	110539013	+
Frame-shit	ENST00000531677	ENST00000378402		TCGA	LD	OV	TCGA-24-2289-01A	EBAG9	chr8	110566172	+	PKHD1L1	chr8	110539013	+
Frame-shit	ENST00000518852	ENST00000356766		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000518852	ENST00000521356		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000518852	ENST00000454009		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000240139	ENST00000356766		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000240139	ENST00000521356		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000240139	ENST00000454009		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000289963	ENST00000356766		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000289963	ENST00000521356		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000289963	ENST00000454009		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000397775	ENST00000356766		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000397775	ENST00000521356		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000397775	ENST00000454009		TCGA	LD	OV	TCGA-24-2289-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22171841	+
Frame-shit	ENST00000302516	ENST00000264010		TCGA	LD	OV	TCGA-24-2289-01A	SF3B3	chr16	70578436	+	CTCF	chr16	67660458	+
Frame-shit	ENST00000302516	ENST00000401394		TCGA	LD	OV	TCGA-24-2289-01A	SF3B3	chr16	70578436	+	CTCF	chr16	67660458	+
Frame-shit	ENST00000267202	ENST00000344275		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000442833		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000280560		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000540285		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000346530		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000392439		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000442028		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000267202	ENST00000542678		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
5CDS-intron	ENST00000267202	ENST00000541983		TCGA	LD	OV	TCGA-24-2289-01A	VPS37B	chr12	123380499	-	ABCB9	chr12	123416875	-
Frame-shit	ENST00000487799	ENST00000446160		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000487799	ENST00000383050		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000487799	ENST00000462519		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000487799	ENST00000473672		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
Frame-shit	ENST00000460851	ENST00000446160		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000460851	ENST00000383050		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000460851	ENST00000462519		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000460851	ENST00000473672		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
Frame-shit	ENST00000406576	ENST00000446160		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000406576	ENST00000383050		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000406576	ENST00000462519		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000406576	ENST00000473672		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
Frame-shit	ENST00000273435	ENST00000446160		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000273435	ENST00000383050		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000273435	ENST00000462519		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-intron	ENST00000273435	ENST00000473672		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-3CDS	ENST00000383043	ENST00000446160		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-intron	ENST00000383043	ENST00000383050		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-intron	ENST00000383043	ENST00000462519		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-intron	ENST00000383043	ENST00000473672		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-3CDS	ENST00000482471	ENST00000446160		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-intron	ENST00000482471	ENST00000383050		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-intron	ENST00000482471	ENST00000462519		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
intron-intron	ENST00000482471	ENST00000473672		TCGA	LD	OV	TCGA-24-2290-01A	EIF2A	chr3	150270212	+	ANKUB1	chr3	149479400	-
5CDS-5UTR	ENST00000346178	ENST00000278412		TCGA	LD	OV	TCGA-24-2290-01A	GANAB	chr11	62414034	-	SSRP1	chr11	57102714	-
5CDS-5UTR	ENST00000356638	ENST00000278412		TCGA	LD	OV	TCGA-24-2290-01A	GANAB	chr11	62414034	-	SSRP1	chr11	57102714	-
5CDS-5UTR	ENST00000534779	ENST00000278412		TCGA	LD	OV	TCGA-24-2290-01A	GANAB	chr11	62414034	-	SSRP1	chr11	57102714	-
5UTR-5UTR	ENST00000540933	ENST00000278412		TCGA	LD	OV	TCGA-24-2290-01A	GANAB	chr11	62414034	-	SSRP1	chr11	57102714	-
intron-5UTR	ENST00000534422	ENST00000278412		TCGA	LD	OV	TCGA-24-2290-01A	GANAB	chr11	62414034	-	SSRP1	chr11	57102714	-
Frame-shit	ENST00000378460	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000378460	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000378460	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000378460	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5CDS-5UTR	ENST00000378460	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5UTR-3CDS	ENST00000530326	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5UTR-3CDS	ENST00000530326	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5UTR-3CDS	ENST00000530326	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5UTR-3CDS	ENST00000530326	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5UTR-5UTR	ENST00000530326	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528071	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528071	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528071	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528071	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-5UTR	ENST00000528071	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528501	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528501	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528501	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000528501	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-5UTR	ENST00000528501	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000531016	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000531016	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000531016	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-3CDS	ENST00000531016	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
intron-5UTR	ENST00000531016	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000532747	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000532747	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000532747	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000532747	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5CDS-5UTR	ENST00000532747	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000526870	ENST00000525123		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000526870	ENST00000298861		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000526870	ENST00000357610		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
Frame-shit	ENST00000526870	ENST00000528244		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
5CDS-5UTR	ENST00000526870	ENST00000529712		TCGA	LD	OV	TCGA-24-2290-01A	NUP160	chr11	47869400	-	AGBL2	chr11	47726280	-
3UTR-3CDS	ENST00000555690	ENST00000256339		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
3UTR-3CDS	ENST00000555690	ENST00000555664		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
3UTR-3CDS	ENST00000555690	ENST00000553484		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
3UTR-3CDS	ENST00000555690	ENST00000393151		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000304338	ENST00000256339		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000304338	ENST00000555664		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000304338	ENST00000553484		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000304338	ENST00000393151		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000328839	ENST00000256339		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000328839	ENST00000555664		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000328839	ENST00000553484		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
Frame-shit	ENST00000328839	ENST00000393151		TCGA	LD	OV	TCGA-24-2293-01A	PPP4R4	chr14	94642464	+	UNC79	chr14	94155011	+
In-frame	ENST00000254480	ENST00000434006		TCGA	LD	OV	TCGA-24-2293-01A	SMARCC1	chr3	47721927	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000425518	ENST00000434006		TCGA	LD	OV	TCGA-24-2293-01A	SMARCC1	chr3	47721927	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000308511	ENST00000518852		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000308511	ENST00000240139		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000308511	ENST00000289963		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000308511	ENST00000397775		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
intron-3CDS	ENST00000521301	ENST00000518852		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
intron-3CDS	ENST00000521301	ENST00000240139		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
intron-3CDS	ENST00000521301	ENST00000289963		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
intron-3CDS	ENST00000521301	ENST00000397775		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000389279	ENST00000518852		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000389279	ENST00000240139		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000389279	ENST00000289963		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
Frame-shit	ENST00000389279	ENST00000397775		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
5UTR-3CDS	ENST00000520861	ENST00000518852		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
5UTR-3CDS	ENST00000520861	ENST00000240139		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
5UTR-3CDS	ENST00000520861	ENST00000289963		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
5UTR-3CDS	ENST00000520861	ENST00000397775		TCGA	LD	OV	TCGA-24-2297-01A	CCAR2	chr8	22470649	+	PPP3CC	chr8	22368599	+
5CDS-intron	ENST00000436443	ENST00000287912		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000436443	ENST00000401878		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000436443	ENST00000392759		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000436443	ENST00000486747		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000436443	ENST00000341148		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000342788	ENST00000287912		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000342788	ENST00000401878		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000342788	ENST00000392759		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000342788	ENST00000486747		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000342788	ENST00000341148		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000402597	ENST00000287912		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000402597	ENST00000401878		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000402597	ENST00000392759		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000402597	ENST00000486747		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
5CDS-intron	ENST00000402597	ENST00000341148		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
intron-intron	ENST00000484474	ENST00000287912		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
intron-intron	ENST00000484474	ENST00000401878		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
intron-intron	ENST00000484474	ENST00000392759		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
intron-intron	ENST00000484474	ENST00000486747		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
intron-intron	ENST00000484474	ENST00000341148		TCGA	LD	OV	TCGA-24-2297-01A	ERBB4	chr2	213403173	-	RBM33	chr7	155567253	+
Frame-shit	ENST00000234160	ENST00000408978		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
Frame-shit	ENST00000234160	ENST00000409044		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
Frame-shit	ENST00000234160	ENST00000334231		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
5CDS-3UTR	ENST00000234160	ENST00000602629		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
3UTR-3CDS	ENST00000493692	ENST00000408978		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
3UTR-3CDS	ENST00000493692	ENST00000409044		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
3UTR-3CDS	ENST00000493692	ENST00000334231		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
3UTR-3UTR	ENST00000493692	ENST00000602629		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
5UTR-3CDS	ENST00000452526	ENST00000408978		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
5UTR-3CDS	ENST00000452526	ENST00000409044		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
5UTR-3CDS	ENST00000452526	ENST00000334231		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
5UTR-3UTR	ENST00000452526	ENST00000602629		TCGA	LD	OV	TCGA-24-2297-01A	GORASP2	chr2	171785913	+	MYO3B	chr2	171508138	+
5UTR-3CDS	ENST00000351960	ENST00000334456		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000351960	ENST00000376450		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000351960	ENST00000444035		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000351960	ENST00000544570		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000351960	ENST00000418754		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000351960	ENST00000540345		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-intron	ENST00000351960	ENST00000540380		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000358965	ENST00000334456		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000358965	ENST00000376450		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000358965	ENST00000444035		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000358965	ENST00000544570		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000358965	ENST00000418754		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000358965	ENST00000540345		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-intron	ENST00000358965	ENST00000540380		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000393695	ENST00000334456		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000393695	ENST00000376450		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000393695	ENST00000444035		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000393695	ENST00000544570		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000393695	ENST00000418754		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000393695	ENST00000540345		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-intron	ENST00000393695	ENST00000540380		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000543450	ENST00000334456		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000543450	ENST00000376450		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000543450	ENST00000444035		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000543450	ENST00000544570		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000543450	ENST00000418754		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-3CDS	ENST00000543450	ENST00000540345		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
5UTR-intron	ENST00000543450	ENST00000540380		TCGA	LD	OV	TCGA-24-2297-01A	NUMA1	chr11	71780888	-	PDE2A	chr11	72353370	-
In-frame	ENST00000433360	ENST00000380254		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000433360	ENST00000346498		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000433360	ENST00000518734		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000433360	ENST00000517436		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000433360	ENST00000519471		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000340694	ENST00000380254		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000340694	ENST00000346498		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000340694	ENST00000518734		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000340694	ENST00000517436		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000340694	ENST00000519471		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000424654	ENST00000380254		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000424654	ENST00000346498		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000424654	ENST00000518734		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000424654	ENST00000517436		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000424654	ENST00000519471		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000433881	ENST00000380254		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000433881	ENST00000346498		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000433881	ENST00000518734		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000433881	ENST00000517436		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000433881	ENST00000519471		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000289495	ENST00000380254		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000289495	ENST00000346498		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000289495	ENST00000518734		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000289495	ENST00000517436		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000289495	ENST00000519471		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000456331	ENST00000380254		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000456331	ENST00000346498		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000456331	ENST00000518734		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000456331	ENST00000517436		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
5CDS-intron	ENST00000456331	ENST00000519471		TCGA	LD	OV	TCGA-24-2297-01A	PPP1R9A	chr7	94540820	+	FBXO16	chr8	28309993	-
In-frame	ENST00000260197	ENST00000529397		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000260197	ENST00000422003		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
3UTR-3CDS	ENST00000532451	ENST00000529397		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
3UTR-3CDS	ENST00000532451	ENST00000422003		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000525532	ENST00000529397		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000525532	ENST00000422003		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000532694	ENST00000529397		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000532694	ENST00000422003		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000534286	ENST00000529397		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000534286	ENST00000422003		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000527934	ENST00000529397		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
intron-3CDS	ENST00000527934	ENST00000422003		TCGA	LD	OV	TCGA-24-2297-01A	SORL1	chr11	121393698	+	TBCEL	chr11	120957487	+
Frame-shit	ENST00000429989	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000429989	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000429989	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000429989	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
Frame-shit	ENST00000481124	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000481124	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000481124	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000481124	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
Frame-shit	ENST00000372164	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372164	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372164	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372164	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
Frame-shit	ENST00000372158	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372158	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372158	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372158	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
Frame-shit	ENST00000341863	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000341863	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000341863	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000341863	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
Frame-shit	ENST00000372156	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372156	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372156	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
5CDS-intron	ENST00000372156	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
intron-3CDS	ENST00000265450	ENST00000381312		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
intron-intron	ENST00000265450	ENST00000381310		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
intron-intron	ENST00000265450	ENST00000381305		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
intron-intron	ENST00000265450	ENST00000469464		TCGA	LD	OV	TCGA-24-2297-01A	TSPAN14	chr10	82249070	+	ADARB2	chr10	1421355	-
Frame-shit	ENST00000336665	ENST00000263642		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
In-frame	ENST00000336665	ENST00000421365		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
Frame-shit	ENST00000304032	ENST00000263642		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
In-frame	ENST00000304032	ENST00000421365		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
intron-3CDS	ENST00000409538	ENST00000263642		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
intron-3CDS	ENST00000409538	ENST00000421365		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
intron-3CDS	ENST00000428334	ENST00000263642		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
intron-3CDS	ENST00000428334	ENST00000421365		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
Frame-shit	ENST00000409457	ENST00000263642		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
In-frame	ENST00000409457	ENST00000421365		TCGA	LD	OV	TCGA-24-2298-01A	AGAP1	chr2	236403493	+	IFIH1	chr2	163167443	-
Frame-shit	ENST00000263102	ENST00000355710		TCGA	LD	OV	TCGA-24-2298-01A	CCDC6	chr10	61665880	-	RET	chr10	43595907	+
Frame-shit	ENST00000263102	ENST00000340058		TCGA	LD	OV	TCGA-24-2298-01A	CCDC6	chr10	61665880	-	RET	chr10	43595907	+
intron-3CDS	ENST00000406902	ENST00000342894		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000406902	ENST00000538017		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3UTR	ENST00000406902	ENST00000466226		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000361034	ENST00000342894		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000361034	ENST00000538017		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3UTR	ENST00000361034	ENST00000466226		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000490378	ENST00000342894		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000490378	ENST00000538017		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3UTR	ENST00000490378	ENST00000466226		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000408031	ENST00000342894		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3CDS	ENST00000408031	ENST00000538017		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
intron-3UTR	ENST00000408031	ENST00000466226		TCGA	LD	OV	TCGA-24-2298-01A	GRAMD4	chr22	46973187	+	RIBC2	chr22	45826780	+
Frame-shit	ENST00000450735	ENST00000261721		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-3UTR	ENST00000450735	ENST00000379403		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-intron	ENST00000450735	ENST00000560015		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
Frame-shit	ENST00000304231	ENST00000261721		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-3UTR	ENST00000304231	ENST00000379403		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-intron	ENST00000304231	ENST00000560015		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
Frame-shit	ENST00000399166	ENST00000261721		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-3UTR	ENST00000399166	ENST00000379403		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-intron	ENST00000399166	ENST00000560015		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
Frame-shit	ENST00000426485	ENST00000261721		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-3UTR	ENST00000426485	ENST00000379403		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5CDS-intron	ENST00000426485	ENST00000560015		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
intron-3CDS	ENST00000500334	ENST00000261721		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
intron-3UTR	ENST00000500334	ENST00000379403		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
intron-intron	ENST00000500334	ENST00000560015		TCGA	LD	OV	TCGA-24-2298-01A	HOMER2	chr15	83621283	-	BTBD1	chr15	83686977	-
5UTR-5UTR	ENST00000541730	ENST00000523677		TCGA	LD	OV	TCGA-24-2298-01A	MBOAT1	chr6	20212367	-	C1orf210	chr1	43749039	-
5UTR-5UTR	ENST00000541730	ENST00000423420		TCGA	LD	OV	TCGA-24-2298-01A	MBOAT1	chr6	20212367	-	C1orf210	chr1	43749039	-
5CDS-5UTR	ENST00000324607	ENST00000523677		TCGA	LD	OV	TCGA-24-2298-01A	MBOAT1	chr6	20212367	-	C1orf210	chr1	43749039	-
5CDS-5UTR	ENST00000324607	ENST00000423420		TCGA	LD	OV	TCGA-24-2298-01A	MBOAT1	chr6	20212367	-	C1orf210	chr1	43749039	-
5CDS-5UTR	ENST00000536798	ENST00000523677		TCGA	LD	OV	TCGA-24-2298-01A	MBOAT1	chr6	20212367	-	C1orf210	chr1	43749039	-
5CDS-5UTR	ENST00000536798	ENST00000423420		TCGA	LD	OV	TCGA-24-2298-01A	MBOAT1	chr6	20212367	-	C1orf210	chr1	43749039	-
5UTR-3UTR	ENST00000261716	ENST00000379061		TCGA	LD	OV	TCGA-24-2298-01A	TAOK1	chr17	27718042	+	SARM1	chr17	26722924	+
5UTR-3UTR	ENST00000261716	ENST00000457710		TCGA	LD	OV	TCGA-24-2298-01A	TAOK1	chr17	27718042	+	SARM1	chr17	26722924	+
5UTR-3UTR	ENST00000536202	ENST00000379061		TCGA	LD	OV	TCGA-24-2298-01A	TAOK1	chr17	27718042	+	SARM1	chr17	26722924	+
5UTR-3UTR	ENST00000536202	ENST00000457710		TCGA	LD	OV	TCGA-24-2298-01A	TAOK1	chr17	27718042	+	SARM1	chr17	26722924	+
5UTR-3CDS	ENST00000310473	ENST00000530124		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-3CDS	ENST00000310473	ENST00000257247		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-5UTR	ENST00000310473	ENST00000525875		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-intron	ENST00000310473	ENST00000378024		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-3CDS	ENST00000536983	ENST00000530124		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-3CDS	ENST00000536983	ENST00000257247		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-5UTR	ENST00000536983	ENST00000525875		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-intron	ENST00000536983	ENST00000378024		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-3CDS	ENST00000542615	ENST00000530124		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-3CDS	ENST00000542615	ENST00000257247		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-5UTR	ENST00000542615	ENST00000525875		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-intron	ENST00000542615	ENST00000378024		TCGA	LD	OV	TCGA-24-2298-01A	UCP2	chr11	73693766	-	AHNAK	chr11	62201363	-
5UTR-3CDS	ENST00000261488	ENST00000487861		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000261488	ENST00000471583		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000261488	ENST00000487270		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000261488	ENST00000488612		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000261488	ENST00000390683		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
5UTR-3UTR	ENST00000261488	ENST00000469165		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000412891	ENST00000487861		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000412891	ENST00000471583		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000412891	ENST00000487270		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000412891	ENST00000488612		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000412891	ENST00000390683		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3UTR	ENST00000412891	ENST00000469165		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000540032	ENST00000487861		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000540032	ENST00000471583		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000540032	ENST00000487270		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000540032	ENST00000488612		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000540032	ENST00000390683		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3UTR	ENST00000540032	ENST00000469165		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000482207	ENST00000487861		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000482207	ENST00000471583		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000482207	ENST00000487270		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000482207	ENST00000488612		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3CDS	ENST00000482207	ENST00000390683		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
intron-3UTR	ENST00000482207	ENST00000469165		TCGA	LD	OV	TCGA-25-1312-01A	ENOX1	chr13	44360788	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000251472	ENST00000248484		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
Frame-shit	ENST00000251472	ENST00000382263		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5CDS-5UTR	ENST00000251472	ENST00000403372		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5CDS-intron	ENST00000251472	ENST00000464735		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5CDS-intron	ENST00000251472	ENST00000382258		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
Frame-shit	ENST00000591495	ENST00000248484		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
Frame-shit	ENST00000591495	ENST00000382263		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5CDS-5UTR	ENST00000591495	ENST00000403372		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5CDS-intron	ENST00000591495	ENST00000464735		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5CDS-intron	ENST00000591495	ENST00000382258		TCGA	LD	OV	TCGA-25-1312-01A	MAST1	chr19	12951880	+	TNFRSF19	chr13	24190006	+
5UTR-5UTR	ENST00000318948	ENST00000380637		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000318948	ENST00000380634		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000318948	ENST00000458295		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000318948	ENST00000380631		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000318948	ENST00000333634		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
intron-5UTR	ENST00000400199	ENST00000380637		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
intron-5UTR	ENST00000400199	ENST00000380634		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
intron-5UTR	ENST00000400199	ENST00000458295		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
intron-5UTR	ENST00000400199	ENST00000380631		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
intron-5UTR	ENST00000400199	ENST00000333634		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000400202	ENST00000380637		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000400202	ENST00000380634		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000400202	ENST00000458295		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000400202	ENST00000380631		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
5UTR-5UTR	ENST00000400202	ENST00000333634		TCGA	LD	OV	TCGA-25-1312-01A	NRIP1	chr21	16386665	-	SH3BGR	chr21	40834301	+
intron-3CDS	ENST00000266070	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000266070	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000395343	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000395343	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000395340	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000395340	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000395335	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000395335	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000370371	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000370371	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000370368	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000370368	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000354665	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000354665	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000370366	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000370366	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000266071	ENST00000599957		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000266071	ENST00000389201		TCGA	LD	OV	TCGA-25-1313-01A	DIDO1	chr20	61542542	-	LRRC4B	chr19	51022672	-
intron-3CDS	ENST00000261596	ENST00000295756		TCGA	LD	OV	TCGA-25-1313-01A	LPIN2	chr18	3013085	-	TRAT1	chr3	108565915	+
intron-3CDS	ENST00000261596	ENST00000426646		TCGA	LD	OV	TCGA-25-1313-01A	LPIN2	chr18	3013085	-	TRAT1	chr3	108565915	+
intron-3UTR	ENST00000261596	ENST00000493604		TCGA	LD	OV	TCGA-25-1313-01A	LPIN2	chr18	3013085	-	TRAT1	chr3	108565915	+
intron-3CDS	ENST00000581568	ENST00000295756		TCGA	LD	OV	TCGA-25-1313-01A	LPIN2	chr18	3013085	-	TRAT1	chr3	108565915	+
intron-3CDS	ENST00000581568	ENST00000426646		TCGA	LD	OV	TCGA-25-1313-01A	LPIN2	chr18	3013085	-	TRAT1	chr3	108565915	+
intron-3UTR	ENST00000581568	ENST00000493604		TCGA	LD	OV	TCGA-25-1313-01A	LPIN2	chr18	3013085	-	TRAT1	chr3	108565915	+
5UTR-3CDS	ENST00000419886	ENST00000389840		TCGA	LD	OV	TCGA-25-1313-01A	ZNF433	chr19	12146352	-	DNAH17	chr17	76547720	-
5UTR-3CDS	ENST00000419886	ENST00000585328		TCGA	LD	OV	TCGA-25-1313-01A	ZNF433	chr19	12146352	-	DNAH17	chr17	76547720	-
5UTR-intron	ENST00000419886	ENST00000586052		TCGA	LD	OV	TCGA-25-1313-01A	ZNF433	chr19	12146352	-	DNAH17	chr17	76547720	-
Frame-shit	ENST00000344980	ENST00000389840		TCGA	LD	OV	TCGA-25-1313-01A	ZNF433	chr19	12146352	-	DNAH17	chr17	76547720	-
Frame-shit	ENST00000344980	ENST00000585328		TCGA	LD	OV	TCGA-25-1313-01A	ZNF433	chr19	12146352	-	DNAH17	chr17	76547720	-
5CDS-intron	ENST00000344980	ENST00000586052		TCGA	LD	OV	TCGA-25-1313-01A	ZNF433	chr19	12146352	-	DNAH17	chr17	76547720	-
5UTR-3CDS	ENST00000447404	ENST00000253270		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000447404	ENST00000375259		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000447404	ENST00000375257		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-5UTR	ENST00000447404	ENST00000482643		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000348403	ENST00000253270		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000348403	ENST00000375259		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000348403	ENST00000375257		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-5UTR	ENST00000348403	ENST00000482643		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000360998	ENST00000253270		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000360998	ENST00000375259		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-3CDS	ENST00000360998	ENST00000375257		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5UTR-5UTR	ENST00000360998	ENST00000482643		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
intron-3CDS	ENST00000530364	ENST00000253270		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
intron-3CDS	ENST00000530364	ENST00000375259		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
intron-3CDS	ENST00000530364	ENST00000375257		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
intron-5UTR	ENST00000530364	ENST00000482643		TCGA	LD	OV	TCGA-25-1314-01A	STRBP	chr9	126030715	-	SLC35D2	chr9	99130587	-
5CDS-5UTR	ENST00000567435	ENST00000452135		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000567435	ENST00000393360		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000567435	ENST00000455781		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000567435	ENST00000343111		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000567435	ENST00000347470		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000567435	ENST00000397072		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000567435	ENST00000425491		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000567435	ENST00000539014		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000567435	ENST00000524170		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000565335	ENST00000452135		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000565335	ENST00000393360		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000565335	ENST00000455781		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000565335	ENST00000343111		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000565335	ENST00000347470		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000565335	ENST00000397072		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000565335	ENST00000425491		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000565335	ENST00000539014		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000565335	ENST00000524170		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000395081	ENST00000452135		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000395081	ENST00000393360		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000395081	ENST00000455781		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000395081	ENST00000343111		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000395081	ENST00000347470		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000395081	ENST00000397072		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000395081	ENST00000425491		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000395081	ENST00000539014		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000395081	ENST00000524170		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000361351	ENST00000452135		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000361351	ENST00000393360		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000361351	ENST00000455781		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000361351	ENST00000343111		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000361351	ENST00000347470		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000361351	ENST00000397072		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000361351	ENST00000425491		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000361351	ENST00000539014		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000361351	ENST00000524170		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000564488	ENST00000452135		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000564488	ENST00000393360		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000564488	ENST00000455781		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000564488	ENST00000343111		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000564488	ENST00000347470		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000564488	ENST00000397072		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-5UTR	ENST00000564488	ENST00000425491		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000564488	ENST00000539014		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5CDS-intron	ENST00000564488	ENST00000524170		TCGA	LD	OV	TCGA-25-1314-01A	UBL7	chr15	74751025	-	MAPK9	chr5	179707608	-
5UTR-5UTR	ENST00000449098	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000449098	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000449098	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000449098	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000320084	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000320084	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000320084	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000320084	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000336053	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000336053	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000336053	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000336053	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000554969	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000554969	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000554969	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000554969	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556142	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000556142	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556142	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556142	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000554455	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000554455	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000554455	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000554455	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-5UTR	ENST00000430246	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-intron	ENST00000430246	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-5UTR	ENST00000430246	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-5UTR	ENST00000430246	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000553753	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000553753	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000553753	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000553753	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555914	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000555914	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555914	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555914	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555309	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000555309	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555309	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555309	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556628	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000556628	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556628	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556628	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555883	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000555883	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555883	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000555883	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556513	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000556513	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556513	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000556513	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000557201	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000557201	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000557201	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000557201	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000553300	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000553300	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000553300	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000553300	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-5UTR	ENST00000556897	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-intron	ENST00000556897	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-5UTR	ENST00000556897	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
intron-5UTR	ENST00000556897	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000420743	ENST00000430710		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-intron	ENST00000420743	ENST00000399982		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000420743	ENST00000557364		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5UTR-5UTR	ENST00000420743	ENST00000555962		TCGA	LD	OV	TCGA-25-1315-01A	HNRNPC	chr14	21737457	-	CHD8	chr14	21900017	-
5CDS-intron	ENST00000540235	ENST00000601241		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000540235	ENST00000595326		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000540235	ENST00000379204		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000393930	ENST00000601241		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000393930	ENST00000595326		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000393930	ENST00000379204		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000393931	ENST00000601241		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000393931	ENST00000595326		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000393931	ENST00000379204		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000310706	ENST00000601241		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000310706	ENST00000595326		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
5CDS-intron	ENST00000310706	ENST00000379204		TCGA	LD	OV	TCGA-25-1315-01A	JUP	chr17	39925221	-	SCGB2B2	chr19	35123545	-
In-frame	ENST00000261978	ENST00000238616		TCGA	LD	OV	TCGA-25-1315-01A	LTBP2	chr14	74999129	-	NEK9	chr14	75558181	-
5CDS-intron	ENST00000261978	ENST00000555763		TCGA	LD	OV	TCGA-25-1315-01A	LTBP2	chr14	74999129	-	NEK9	chr14	75558181	-
In-frame	ENST00000556690	ENST00000238616		TCGA	LD	OV	TCGA-25-1315-01A	LTBP2	chr14	74999129	-	NEK9	chr14	75558181	-
5CDS-intron	ENST00000556690	ENST00000555763		TCGA	LD	OV	TCGA-25-1315-01A	LTBP2	chr14	74999129	-	NEK9	chr14	75558181	-
intron-3CDS	ENST00000557425	ENST00000238616		TCGA	LD	OV	TCGA-25-1315-01A	LTBP2	chr14	74999129	-	NEK9	chr14	75558181	-
intron-intron	ENST00000557425	ENST00000555763		TCGA	LD	OV	TCGA-25-1315-01A	LTBP2	chr14	74999129	-	NEK9	chr14	75558181	-
5CDS-5UTR	ENST00000371711	ENST00000289431		TCGA	LD	OV	TCGA-25-1318-01A	B4GALT5	chr20	48257015	-	SPATA2	chr20	48525129	-
5CDS-5UTR	ENST00000371711	ENST00000422556		TCGA	LD	OV	TCGA-25-1318-01A	B4GALT5	chr20	48257015	-	SPATA2	chr20	48525129	-
5CDS-intron	ENST00000371711	ENST00000543716		TCGA	LD	OV	TCGA-25-1318-01A	B4GALT5	chr20	48257015	-	SPATA2	chr20	48525129	-
5UTR-3CDS	ENST00000370918	ENST00000373365		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-intron	ENST00000370918	ENST00000470973		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-3CDS	ENST00000304434	ENST00000373365		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-intron	ENST00000304434	ENST00000470973		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
intron-3CDS	ENST00000542638	ENST00000373365		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
intron-intron	ENST00000542638	ENST00000470973		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-3CDS	ENST00000541407	ENST00000373365		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-intron	ENST00000541407	ENST00000470973		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-3CDS	ENST00000486973	ENST00000373365		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-intron	ENST00000486973	ENST00000470973		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-3CDS	ENST00000370913	ENST00000373365		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
5UTR-intron	ENST00000370913	ENST00000470973		TCGA	LD	OV	TCGA-25-1318-01A	ELOVL5	chr6	53213615	-	GLO1	chr6	38654750	-
Frame-shit	ENST00000591090	ENST00000431365		TCGA	LD	OV	TCGA-25-1319-01A	ASNA1	chr19	12849472	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000591090	ENST00000585987		TCGA	LD	OV	TCGA-25-1319-01A	ASNA1	chr19	12849472	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000357332	ENST00000431365		TCGA	LD	OV	TCGA-25-1319-01A	ASNA1	chr19	12849472	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000357332	ENST00000585987		TCGA	LD	OV	TCGA-25-1319-01A	ASNA1	chr19	12849472	+	RLN3	chr19	14141522	+
In-frame	ENST00000254322	ENST00000263390		TCGA	LD	OV	TCGA-25-1319-01A	DNAJB1	chr19	14627278	-	MED26	chr19	16689220	-
In-frame	ENST00000396969	ENST00000263390		TCGA	LD	OV	TCGA-25-1319-01A	DNAJB1	chr19	14627278	-	MED26	chr19	16689220	-
In-frame	ENST00000311172	ENST00000339282		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000311172	ENST00000416136		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
In-frame	ENST00000409314	ENST00000339282		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000409314	ENST00000416136		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
In-frame	ENST00000409418	ENST00000339282		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000409418	ENST00000416136		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
In-frame	ENST00000458644	ENST00000339282		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000458644	ENST00000416136		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
Frame-shit	ENST00000409853	ENST00000339282		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000409853	ENST00000416136		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
intron-3CDS	ENST00000409263	ENST00000339282		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
intron-intron	ENST00000409263	ENST00000416136		TCGA	LD	OV	TCGA-25-1319-01A	FCHSD2	chr11	72578910	-	ZNF564	chr19	12639510	-
intron-3UTR	ENST00000397668	ENST00000409573		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-intron	ENST00000397668	ENST00000272570		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-intron	ENST00000397668	ENST00000476902		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-3UTR	ENST00000264827	ENST00000409573		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-intron	ENST00000264827	ENST00000272570		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-intron	ENST00000264827	ENST00000476902		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-3UTR	ENST00000589965	ENST00000409573		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-intron	ENST00000589965	ENST00000272570		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
intron-intron	ENST00000589965	ENST00000476902		TCGA	LD	OV	TCGA-25-1319-01A	HOOK2	chr19	12873941	-	ZC3H8	chr2	112972288	-
Frame-shit	ENST00000263383	ENST00000215567		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000263383	ENST00000596073		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000263383	ENST00000600083		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000263383	ENST00000436007		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-3UTR	ENST00000263383	ENST00000596164		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
In-frame	ENST00000534378	ENST00000215567		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000534378	ENST00000596073		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000534378	ENST00000600083		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000534378	ENST00000436007		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5CDS-3UTR	ENST00000534378	ENST00000596164		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
intron-3CDS	ENST00000531635	ENST00000215567		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
intron-5UTR	ENST00000531635	ENST00000596073		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
intron-5UTR	ENST00000531635	ENST00000600083		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
intron-5UTR	ENST00000531635	ENST00000436007		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
intron-3UTR	ENST00000531635	ENST00000596164		TCGA	LD	OV	TCGA-25-1319-01A	ILVBL	chr19	15226661	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000356341	ENST00000465342		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
5UTR-intron	ENST00000356341	ENST00000391675		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
intron-5UTR	ENST00000530617	ENST00000465342		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
intron-intron	ENST00000530617	ENST00000391675		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
5UTR-5UTR	ENST00000278568	ENST00000465342		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
5UTR-intron	ENST00000278568	ENST00000391675		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
intron-5UTR	ENST00000528203	ENST00000465342		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
intron-intron	ENST00000528203	ENST00000391675		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
intron-5UTR	ENST00000525542	ENST00000465342		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
intron-intron	ENST00000525542	ENST00000391675		TCGA	LD	OV	TCGA-25-1319-01A	PAK1	chr11	77184597	-	POU5F1B	chr8	128427133	+
5CDS-5UTR	ENST00000414241	ENST00000372583		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000414241	ENST00000372584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000414241	ENST00000247584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000414241	ENST00000429157		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000414241	ENST00000460604		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373493	ENST00000372583		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373493	ENST00000372584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373493	ENST00000247584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373493	ENST00000429157		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000373493	ENST00000460604		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000524393	ENST00000372583		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000524393	ENST00000372584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000524393	ENST00000247584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
intron-5UTR	ENST00000524393	ENST00000429157		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
intron-intron	ENST00000524393	ENST00000460604		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000544435	ENST00000372583		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000544435	ENST00000372584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000544435	ENST00000247584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000544435	ENST00000429157		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000544435	ENST00000460604		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373485	ENST00000372583		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373485	ENST00000372584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373485	ENST00000247584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000373485	ENST00000429157		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000373485	ENST00000460604		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000458695	ENST00000372583		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000458695	ENST00000372584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000458695	ENST00000247584		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-5UTR	ENST00000458695	ENST00000429157		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
5CDS-intron	ENST00000458695	ENST00000460604		TCGA	LD	OV	TCGA-25-1319-01A	RBBP4	chr1	33138502	+	HIVEP3	chr1	42094618	-
Frame-shit	ENST00000215567	ENST00000263383		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
Frame-shit	ENST00000215567	ENST00000534378		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5CDS-intron	ENST00000215567	ENST00000531635		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-3CDS	ENST00000596073	ENST00000263383		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-3CDS	ENST00000596073	ENST00000534378		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-intron	ENST00000596073	ENST00000531635		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-3CDS	ENST00000600083	ENST00000263383		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-3CDS	ENST00000600083	ENST00000534378		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-intron	ENST00000600083	ENST00000531635		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-3CDS	ENST00000436007	ENST00000263383		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-3CDS	ENST00000436007	ENST00000534378		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
5UTR-intron	ENST00000436007	ENST00000531635		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
3UTR-3CDS	ENST00000596164	ENST00000263383		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
3UTR-3CDS	ENST00000596164	ENST00000534378		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
3UTR-intron	ENST00000596164	ENST00000531635		TCGA	LD	OV	TCGA-25-1319-01A	TECR	chr19	14640523	+	ILVBL	chr19	15227333	-
In-frame	ENST00000301547	ENST00000595618		TCGA	LD	OV	TCGA-25-1319-01A	ZNF443	chr19	12551726	-	MYO9B	chr19	17303555	+
In-frame	ENST00000301547	ENST00000594824		TCGA	LD	OV	TCGA-25-1319-01A	ZNF443	chr19	12551726	-	MYO9B	chr19	17303555	+
In-frame	ENST00000301547	ENST00000397274		TCGA	LD	OV	TCGA-25-1319-01A	ZNF443	chr19	12551726	-	MYO9B	chr19	17303555	+
5CDS-intron	ENST00000301547	ENST00000593411		TCGA	LD	OV	TCGA-25-1319-01A	ZNF443	chr19	12551726	-	MYO9B	chr19	17303555	+
5CDS-5UTR	ENST00000372699	ENST00000297769		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372699	ENST00000297770		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372699	ENST00000518549		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372696	ENST00000297769		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372696	ENST00000297770		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372696	ENST00000518549		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372697	ENST00000297769		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372697	ENST00000297770		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
5CDS-5UTR	ENST00000372697	ENST00000518549		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
3UTR-5UTR	ENST00000493756	ENST00000297769		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
3UTR-5UTR	ENST00000493756	ENST00000297770		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
3UTR-5UTR	ENST00000493756	ENST00000518549		TCGA	LD	OV	TCGA-25-1319-01A	ZNF684	chr1	40998853	+	CPA6	chr8	68536486	-
Frame-shit	ENST00000446165	ENST00000221486		TCGA	LD	OV	TCGA-25-1319-01A	ZNF791	chr19	12721896	+	RNASEH2A	chr19	12917822	+
Frame-shit	ENST00000343325	ENST00000221486		TCGA	LD	OV	TCGA-25-1319-01A	ZNF791	chr19	12721896	+	RNASEH2A	chr19	12917822	+
5UTR-3CDS	ENST00000458122	ENST00000221486		TCGA	LD	OV	TCGA-25-1319-01A	ZNF791	chr19	12721896	+	RNASEH2A	chr19	12917822	+
5UTR-3CDS	ENST00000540038	ENST00000221486		TCGA	LD	OV	TCGA-25-1319-01A	ZNF791	chr19	12721896	+	RNASEH2A	chr19	12917822	+
3UTR-3CDS	ENST00000498389	ENST00000221486		TCGA	LD	OV	TCGA-25-1319-01A	ZNF791	chr19	12721896	+	RNASEH2A	chr19	12917822	+
In-frame	ENST00000389153	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000389153	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000389153	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000389153	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000389153	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000389153	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000608853	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000608853	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000608853	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000608853	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000608853	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000608853	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000377617	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000377617	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000377617	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000377617	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000377617	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
In-frame	ENST00000377617	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000550104	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000550104	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000550104	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000550104	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000550104	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
3UTR-3CDS	ENST00000550104	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
Frame-shit	ENST00000542287	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
Frame-shit	ENST00000542287	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
Frame-shit	ENST00000542287	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
Frame-shit	ENST00000542287	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
Frame-shit	ENST00000542287	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
Frame-shit	ENST00000542287	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000535949	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000535949	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000535949	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000535949	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000535949	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000535949	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000549455	ENST00000300134		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000549455	ENST00000538913		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000549455	ENST00000543873		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000549455	ENST00000556155		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000549455	ENST00000537215		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
intron-3CDS	ENST00000549455	ENST00000454075		TCGA	LD	OV	TCGA-25-1320-01A	ATXN2	chr12	111902466	-	STAT6	chr12	57493223	-
5CDS-intron	ENST00000545387	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000545387	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000402551	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000316273	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000597011	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000599246	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
5CDS-intron	ENST00000598162	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000599227		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000269829		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000594384		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000596597		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000596825		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000333581		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000599953		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000596652		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000600044		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000600220		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000596929		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000595981		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
intron-intron	ENST00000601496	ENST00000415203		TCGA	LD	OV	TCGA-25-1320-01A	BCAT2	chr19	49302932	-	ZNF544	chr19	58788549	+
In-frame	ENST00000569600	ENST00000373050		TCGA	LD	OV	TCGA-25-1320-01A	C16orf70	chr16	67168370	+	MDFI	chr6	41617357	+
In-frame	ENST00000219139	ENST00000373050		TCGA	LD	OV	TCGA-25-1320-01A	C16orf70	chr16	67168370	+	MDFI	chr6	41617357	+
3UTR-3CDS	ENST00000569683	ENST00000373050		TCGA	LD	OV	TCGA-25-1320-01A	C16orf70	chr16	67168370	+	MDFI	chr6	41617357	+
intron-5UTR	ENST00000341505	ENST00000360957		TCGA	LD	OV	TCGA-25-1320-01A	CBLC	chr19	45287658	+	PPP1R13L	chr19	45901597	-
intron-5UTR	ENST00000341505	ENST00000418234		TCGA	LD	OV	TCGA-25-1320-01A	CBLC	chr19	45287658	+	PPP1R13L	chr19	45901597	-
5CDS-5UTR	ENST00000270279	ENST00000360957		TCGA	LD	OV	TCGA-25-1320-01A	CBLC	chr19	45287658	+	PPP1R13L	chr19	45901597	-
5CDS-5UTR	ENST00000270279	ENST00000418234		TCGA	LD	OV	TCGA-25-1320-01A	CBLC	chr19	45287658	+	PPP1R13L	chr19	45901597	-
5CDS-intron	ENST00000584601	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584601	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000406381	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000541774	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000445658	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540147	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000584450	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000269571	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000578199	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000540042	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000346872		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000394189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000439167		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000535189		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377944		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377945		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377952		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000377958		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000346243		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000350532		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000351680		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000467757		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000439016		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000584888	ENST00000583368		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	IKZF3	chr17	37914218	-
5CDS-3UTR	ENST00000584601	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000406381	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000541774	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000445658	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000540147	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000584450	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000269571	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000578199	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
5CDS-3UTR	ENST00000540042	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
intron-3UTR	ENST00000584888	ENST00000411616		TCGA	LD	OV	TCGA-25-1320-01A	ERBB2	chr17	37873733	+	MAGI2-AS2	chr7	78641400	+
Frame-shit	ENST00000397299	ENST00000389629		TCGA	LD	OV	TCGA-25-1320-01A	JMJD7	chr15	42120386	+	RTF1	chr15	41745099	+
5CDS-3UTR	ENST00000397299	ENST00000462276		TCGA	LD	OV	TCGA-25-1320-01A	JMJD7	chr15	42120386	+	RTF1	chr15	41745099	+
5UTR-3CDS	ENST00000408047	ENST00000389629		TCGA	LD	OV	TCGA-25-1320-01A	JMJD7	chr15	42120386	+	RTF1	chr15	41745099	+
5UTR-3UTR	ENST00000408047	ENST00000462276		TCGA	LD	OV	TCGA-25-1320-01A	JMJD7	chr15	42120386	+	RTF1	chr15	41745099	+
3UTR-3CDS	ENST00000405106	ENST00000389629		TCGA	LD	OV	TCGA-25-1320-01A	JMJD7	chr15	42120386	+	RTF1	chr15	41745099	+
3UTR-3UTR	ENST00000405106	ENST00000462276		TCGA	LD	OV	TCGA-25-1320-01A	JMJD7	chr15	42120386	+	RTF1	chr15	41745099	+
5UTR-5UTR	ENST00000545708	ENST00000362005		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-intron	ENST00000545708	ENST00000370389		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000545708	ENST00000399546		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000545708	ENST00000394530		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000545708	ENST00000402388		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-intron	ENST00000545708	ENST00000484781		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000540243	ENST00000362005		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-intron	ENST00000540243	ENST00000370389		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000540243	ENST00000399546		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000540243	ENST00000394530		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-5UTR	ENST00000540243	ENST00000402388		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5UTR-intron	ENST00000540243	ENST00000484781		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370298	ENST00000362005		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-intron	ENST00000370298	ENST00000370389		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370298	ENST00000399546		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370298	ENST00000394530		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370298	ENST00000402388		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-intron	ENST00000370298	ENST00000484781		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
3UTR-5UTR	ENST00000471953	ENST00000362005		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
3UTR-intron	ENST00000471953	ENST00000370389		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
3UTR-5UTR	ENST00000471953	ENST00000399546		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
3UTR-5UTR	ENST00000471953	ENST00000394530		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
3UTR-5UTR	ENST00000471953	ENST00000402388		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
3UTR-intron	ENST00000471953	ENST00000484781		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370303	ENST00000362005		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-intron	ENST00000370303	ENST00000370389		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370303	ENST00000399546		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370303	ENST00000394530		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-5UTR	ENST00000370303	ENST00000402388		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
5CDS-intron	ENST00000370303	ENST00000484781		TCGA	LD	OV	TCGA-25-1320-01A	MTF2	chr1	93545088	+	BRDT	chr1	92428275	+
In-frame	ENST00000579146	ENST00000248594		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000579146	ENST00000415482		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000579146	ENST00000435495		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000300658	ENST00000248594		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000300658	ENST00000415482		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000300658	ENST00000435495		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000378011	ENST00000248594		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000378011	ENST00000415482		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000378011	ENST00000435495		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000429199	ENST00000248594		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000429199	ENST00000415482		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000429199	ENST00000435495		TCGA	LD	OV	TCGA-25-1320-01A	PGAP3	chr17	37844087	-	PTPN12	chr7	77227159	+
In-frame	ENST00000338244	ENST00000358409		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
In-frame	ENST00000338244	ENST00000359864		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
In-frame	ENST00000338244	ENST00000397122		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
Frame-shit	ENST00000379333	ENST00000358409		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
Frame-shit	ENST00000379333	ENST00000359864		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
Frame-shit	ENST00000379333	ENST00000397122		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
In-frame	ENST00000424750	ENST00000358409		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
In-frame	ENST00000424750	ENST00000359864		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
In-frame	ENST00000424750	ENST00000397122		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
intron-3CDS	ENST00000468355	ENST00000358409		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
intron-3CDS	ENST00000468355	ENST00000359864		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
intron-3CDS	ENST00000468355	ENST00000397122		TCGA	LD	OV	TCGA-25-1320-01A	SLC23A2	chr20	4848416	-	TEAD4	chr12	3147134	+
Frame-shit	ENST00000345506	ENST00000261776		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000345506	ENST00000571759		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000345506	ENST00000536184		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
Frame-shit	ENST00000590949	ENST00000261776		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000590949	ENST00000571759		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000590949	ENST00000536184		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
Frame-shit	ENST00000546010	ENST00000261776		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000546010	ENST00000571759		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000546010	ENST00000536184		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
Frame-shit	ENST00000452307	ENST00000261776		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000452307	ENST00000571759		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000452307	ENST00000536184		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
Frame-shit	ENST00000588868	ENST00000261776		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000588868	ENST00000571759		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000588868	ENST00000536184		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
Frame-shit	ENST00000587646	ENST00000261776		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000587646	ENST00000571759		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
5CDS-intron	ENST00000587646	ENST00000536184		TCGA	LD	OV	TCGA-25-1320-01A	STAT5A	chr17	40461502	+	VAC14	chr16	70726874	-
In-frame	ENST00000321867	ENST00000261674		TCGA	LD	OV	TCGA-25-1320-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132262610	+
In-frame	ENST00000321867	ENST00000541286		TCGA	LD	OV	TCGA-25-1320-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132262610	+
5CDS-intron	ENST00000321867	ENST00000539506		TCGA	LD	OV	TCGA-25-1320-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132262610	+
intron-3CDS	ENST00000540647	ENST00000261674		TCGA	LD	OV	TCGA-25-1320-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132262610	+
intron-3CDS	ENST00000540647	ENST00000541286		TCGA	LD	OV	TCGA-25-1320-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132262610	+
intron-intron	ENST00000540647	ENST00000539506		TCGA	LD	OV	TCGA-25-1320-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132262610	+
Frame-shit	ENST00000589799	ENST00000222122		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
Frame-shit	ENST00000589799	ENST00000599385		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
In-frame	ENST00000589799	ENST00000593500		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000589799	ENST00000601104		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
Frame-shit	ENST00000589248	ENST00000222122		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
Frame-shit	ENST00000589248	ENST00000599385		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
In-frame	ENST00000589248	ENST00000593500		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000589248	ENST00000601104		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
Frame-shit	ENST00000291182	ENST00000222122		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
Frame-shit	ENST00000291182	ENST00000599385		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
In-frame	ENST00000291182	ENST00000593500		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000291182	ENST00000601104		TCGA	LD	OV	TCGA-25-1320-01A	ZNF235	chr19	44807543	-	DBP	chr19	49134309	-
5UTR-3CDS	ENST00000474037	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000474037	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000474037	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000474037	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000474037	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000491101	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000491101	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000491101	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000491101	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000491101	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000467003	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000467003	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000467003	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000467003	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000467003	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000475179	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000475179	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000475179	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000475179	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000475179	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000593918	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000593918	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000593918	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000593918	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
5UTR-3CDS	ENST00000593918	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000600148	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000600148	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000600148	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000600148	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000600148	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000355326	ENST00000304076		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000355326	ENST00000602142		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000355326	ENST00000596764		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000355326	ENST00000539284		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
intron-3CDS	ENST00000355326	ENST00000599806		TCGA	LD	OV	TCGA-25-1320-01A	ZNF525	chr19	53869012	+	VAV1	chr19	6821802	+
In-frame	ENST00000252699	ENST00000599117		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000252699	ENST00000432763		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000252699	ENST00000402194		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000252699	ENST00000359191		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000252699	ENST00000598725		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000424234	ENST00000599117		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000424234	ENST00000432763		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000424234	ENST00000402194		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000424234	ENST00000359191		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000424234	ENST00000598725		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000390009	ENST00000599117		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000390009	ENST00000432763		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000390009	ENST00000402194		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000390009	ENST00000359191		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000390009	ENST00000598725		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000497637	ENST00000599117		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000497637	ENST00000432763		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000497637	ENST00000402194		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000497637	ENST00000359191		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
intron-3CDS	ENST00000497637	ENST00000598725		TCGA	LD	OV	TCGA-25-1321-01A	ACTN4	chr19	39138547	+	SUPT5H	chr19	39943996	+
In-frame	ENST00000372134	ENST00000372141		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
In-frame	ENST00000372134	ENST00000404547		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
In-frame	ENST00000372134	ENST00000372142		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
In-frame	ENST00000372134	ENST00000404576		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
In-frame	ENST00000372134	ENST00000556918		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
In-frame	ENST00000372134	ENST00000537893		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
In-frame	ENST00000372134	ENST00000545131		TCGA	LD	OV	TCGA-25-1322-01A	GHITM	chr10	85902510	+	NRG3	chr10	84711225	+
5CDS-5UTR	ENST00000328879	ENST00000439119		TCGA	LD	OV	TCGA-25-1322-01A	KLHL22	chr22	20843272	-	P2RX6P	chr22	21389725	-
5UTR-5UTR	ENST00000440659	ENST00000439119		TCGA	LD	OV	TCGA-25-1322-01A	KLHL22	chr22	20843272	-	P2RX6P	chr22	21389725	-
5UTR-5UTR	ENST00000470335	ENST00000439119		TCGA	LD	OV	TCGA-25-1322-01A	KLHL22	chr22	20843272	-	P2RX6P	chr22	21389725	-
5CDS-5UTR	ENST00000309395	ENST00000413702		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000309395	ENST00000456088		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5CDS-5UTR	ENST00000309395	ENST00000304887		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5CDS-3UTR	ENST00000309395	ENST00000514512		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5UTR-5UTR	ENST00000396051	ENST00000413702		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5UTR-5UTR	ENST00000396051	ENST00000456088		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5UTR-5UTR	ENST00000396051	ENST00000304887		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5UTR-3UTR	ENST00000396051	ENST00000514512		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
3UTR-5UTR	ENST00000511449	ENST00000413702		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
3UTR-5UTR	ENST00000511449	ENST00000456088		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
3UTR-5UTR	ENST00000511449	ENST00000304887		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
3UTR-3UTR	ENST00000511449	ENST00000514512		TCGA	LD	OV	TCGA-25-1322-01A	MOB1B	chr4	71768267	+	MUC7	chr4	71337932	+
5UTR-3CDS	ENST00000221957	ENST00000590333		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000221957	ENST00000309383		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000221957	ENST00000585418		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-intron	ENST00000221957	ENST00000326848		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-intron	ENST00000221957	ENST00000588584		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000592528	ENST00000590333		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000592528	ENST00000309383		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000592528	ENST00000585418		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-intron	ENST00000592528	ENST00000326848		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-intron	ENST00000592528	ENST00000588584		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000585479	ENST00000590333		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000585479	ENST00000309383		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-3CDS	ENST00000585479	ENST00000585418		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-intron	ENST00000585479	ENST00000326848		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
5UTR-intron	ENST00000585479	ENST00000588584		TCGA	LD	OV	TCGA-25-1322-01A	PLIN3	chr19	4867621	-	BRSK1	chr19	55812880	+
Frame-shit	ENST00000463381	ENST00000373368		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
Frame-shit	ENST00000463381	ENST00000168148		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
5CDS-intron	ENST00000463381	ENST00000492481		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000473312	ENST00000373368		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000473312	ENST00000168148		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-intron	ENST00000473312	ENST00000492481		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000479901	ENST00000373368		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000479901	ENST00000168148		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-intron	ENST00000479901	ENST00000492481		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
Frame-shit	ENST00000397238	ENST00000373368		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
Frame-shit	ENST00000397238	ENST00000168148		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
5CDS-intron	ENST00000397238	ENST00000492481		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000476375	ENST00000373368		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000476375	ENST00000168148		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-intron	ENST00000476375	ENST00000492481		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000335367	ENST00000373368		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000335367	ENST00000168148		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-intron	ENST00000335367	ENST00000492481		TCGA	LD	OV	TCGA-25-1323-01A	AGAP3	chr7	150825771	+	SPP2	chr2	234978572	+
intron-3CDS	ENST00000337565	ENST00000239374		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
intron-3CDS	ENST00000337565	ENST00000367290		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
intron-intron	ENST00000337565	ENST00000544131		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000393253	ENST00000239374		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000393253	ENST00000367290		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
5CDS-intron	ENST00000393253	ENST00000544131		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000357757	ENST00000239374		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000357757	ENST00000367290		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
5CDS-intron	ENST00000357757	ENST00000544131		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000308659	ENST00000239374		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000308659	ENST00000367290		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
5CDS-intron	ENST00000308659	ENST00000544131		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000393256	ENST00000239374		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
In-frame	ENST00000393256	ENST00000367290		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
5CDS-intron	ENST00000393256	ENST00000544131		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
intron-3CDS	ENST00000405953	ENST00000239374		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
intron-3CDS	ENST00000405953	ENST00000367290		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
intron-intron	ENST00000405953	ENST00000544131		TCGA	LD	OV	TCGA-25-1323-01A	BCL2L11	chr2	111907724	+	CCDC170	chr6	151894309	+
5UTR-5UTR	ENST00000368655	ENST00000368732		TCGA	LD	OV	TCGA-25-1323-01A	GATAD2B	chr1	153895209	-	S100A8	chr1	153363033	-
5UTR-5UTR	ENST00000368655	ENST00000368733		TCGA	LD	OV	TCGA-25-1323-01A	GATAD2B	chr1	153895209	-	S100A8	chr1	153363033	-
5UTR-5UTR	ENST00000368655	ENST00000477801		TCGA	LD	OV	TCGA-25-1323-01A	GATAD2B	chr1	153895209	-	S100A8	chr1	153363033	-
In-frame	ENST00000416151	ENST00000287598		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
In-frame	ENST00000416151	ENST00000412359		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
5CDS-intron	ENST00000416151	ENST00000560120		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
In-frame	ENST00000249776	ENST00000287598		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
In-frame	ENST00000249776	ENST00000412359		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
5CDS-intron	ENST00000249776	ENST00000560120		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
3UTR-3CDS	ENST00000448395	ENST00000287598		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
3UTR-3CDS	ENST00000448395	ENST00000412359		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
3UTR-intron	ENST00000448395	ENST00000560120		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
In-frame	ENST00000608100	ENST00000287598		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
In-frame	ENST00000608100	ENST00000412359		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
5CDS-intron	ENST00000608100	ENST00000560120		TCGA	LD	OV	TCGA-25-1323-01A	KNSTRN	chr15	40684224	+	BUB1B	chr15	40498385	+
In-frame	ENST00000362042	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000585291	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000357480	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000361665	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
intron-3CDS	ENST00000579481	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000582155	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000583378	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000536222	ENST00000376741		TCGA	LD	OV	TCGA-25-1323-01A	NFE2L1	chr17	46134864	+	SP2	chr17	46000328	+
In-frame	ENST00000278780	ENST00000357236		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
In-frame	ENST00000278780	ENST00000329494		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
In-frame	ENST00000278780	ENST00000262547		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5CDS-5UTR	ENST00000278780	ENST00000487128		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5CDS-5UTR	ENST00000278780	ENST00000358866		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5UTR-3CDS	ENST00000483661	ENST00000357236		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5UTR-3CDS	ENST00000483661	ENST00000329494		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5UTR-3CDS	ENST00000483661	ENST00000262547		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5UTR-5UTR	ENST00000483661	ENST00000487128		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5UTR-5UTR	ENST00000483661	ENST00000358866		TCGA	LD	OV	TCGA-25-1323-01A	OVOL2	chr20	18037301	-	DZANK1	chr20	18371103	-
5UTR-3CDS	ENST00000369893	ENST00000369902		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
5UTR-3CDS	ENST00000369893	ENST00000369899		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
5UTR-3CDS	ENST00000369893	ENST00000423559		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
5UTR-3UTR	ENST00000369893	ENST00000471000		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3CDS	ENST00000602785	ENST00000369902		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3CDS	ENST00000602785	ENST00000369899		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3CDS	ENST00000602785	ENST00000423559		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
3UTR-3UTR	ENST00000602785	ENST00000471000		TCGA	LD	OV	TCGA-25-1323-01A	SFXN2	chr10	104474438	+	SUFU	chr10	104352339	+
Frame-shit	ENST00000609104	ENST00000425013		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
Frame-shit	ENST00000609104	ENST00000389902		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
5CDS-5UTR	ENST00000609104	ENST00000469375		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000277575	ENST00000425013		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000277575	ENST00000389902		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-5UTR	ENST00000277575	ENST00000469375		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000379237	ENST00000425013		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000379237	ENST00000389902		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-5UTR	ENST00000379237	ENST00000469375		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000443016	ENST00000425013		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000443016	ENST00000389902		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-5UTR	ENST00000443016	ENST00000469375		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000609853	ENST00000425013		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-3CDS	ENST00000609853	ENST00000389902		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
intron-5UTR	ENST00000609853	ENST00000469375		TCGA	LD	OV	TCGA-25-1323-01A	USP6NL	chr10	11639630	-	RNF216	chr7	5663756	-
5UTR-3CDS	ENST00000316286	ENST00000222388		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
5UTR-3CDS	ENST00000316286	ENST00000287844		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
5UTR-intron	ENST00000316286	ENST00000473874		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
In-frame	ENST00000491431	ENST00000222388		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
In-frame	ENST00000491431	ENST00000287844		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
5CDS-intron	ENST00000491431	ENST00000473874		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
5UTR-3CDS	ENST00000451334	ENST00000222388		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
5UTR-3CDS	ENST00000451334	ENST00000287844		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
5UTR-intron	ENST00000451334	ENST00000473874		TCGA	LD	OV	TCGA-25-1323-01A	ZNF786	chr7	148787715	-	ABCF2	chr7	150913115	-
In-frame	ENST00000606738	ENST00000370103		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5CDS-5UTR	ENST00000606738	ENST00000462354		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5CDS-5UTR	ENST00000606738	ENST00000536598		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5CDS-5UTR	ENST00000606738	ENST00000338858		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5CDS-5UTR	ENST00000606738	ENST00000359814		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5UTR-3CDS	ENST00000435576	ENST00000370103		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5UTR-5UTR	ENST00000435576	ENST00000462354		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5UTR-5UTR	ENST00000435576	ENST00000536598		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5UTR-5UTR	ENST00000435576	ENST00000338858		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
5UTR-5UTR	ENST00000435576	ENST00000359814		TCGA	LD	OV	TCGA-25-1324-01A	TRABD2B	chr1	48459706	-	OLFM3	chr1	102302581	-
Frame-shit	ENST00000356948	ENST00000215530		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000356948	ENST00000586042		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000356948	ENST00000166133		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000350092	ENST00000215530		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000350092	ENST00000586042		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000350092	ENST00000166133		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000349038	ENST00000215530		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000349038	ENST00000586042		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000349038	ENST00000166133		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000394601	ENST00000215530		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000394601	ENST00000586042		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
Frame-shit	ENST00000394601	ENST00000166133		TCGA	LD	OV	TCGA-25-1326-01A	PTBP1	chr19	808762	+	FGF22	chr19	643235	+
In-frame	ENST00000300935	ENST00000344824		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
In-frame	ENST00000300935	ENST00000538887		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
Frame-shit	ENST00000300935	ENST00000300933		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
5CDS-3UTR	ENST00000300935	ENST00000591645		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
intron-3CDS	ENST00000588105	ENST00000344824		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
intron-3CDS	ENST00000588105	ENST00000538887		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
intron-3CDS	ENST00000588105	ENST00000300933		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
intron-3UTR	ENST00000588105	ENST00000591645		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
Frame-shit	ENST00000586682	ENST00000344824		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
Frame-shit	ENST00000586682	ENST00000538887		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
In-frame	ENST00000586682	ENST00000300933		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
5CDS-3UTR	ENST00000586682	ENST00000591645		TCGA	LD	OV	TCGA-25-1326-01A	RAB8A	chr19	16240414	+	TPM4	chr19	16212074	+
5CDS-5UTR	ENST00000407215	ENST00000342234		TCGA	LD	OV	TCGA-25-1326-01A	SCRN2	chr17	45918036	-	SP6	chr17	45925852	-
5CDS-5UTR	ENST00000407215	ENST00000536300		TCGA	LD	OV	TCGA-25-1326-01A	SCRN2	chr17	45918036	-	SP6	chr17	45925852	-
5CDS-5UTR	ENST00000290216	ENST00000342234		TCGA	LD	OV	TCGA-25-1326-01A	SCRN2	chr17	45918036	-	SP6	chr17	45925852	-
5CDS-5UTR	ENST00000290216	ENST00000536300		TCGA	LD	OV	TCGA-25-1326-01A	SCRN2	chr17	45918036	-	SP6	chr17	45925852	-
5CDS-5UTR	ENST00000584123	ENST00000342234		TCGA	LD	OV	TCGA-25-1326-01A	SCRN2	chr17	45918036	-	SP6	chr17	45925852	-
5CDS-5UTR	ENST00000584123	ENST00000536300		TCGA	LD	OV	TCGA-25-1326-01A	SCRN2	chr17	45918036	-	SP6	chr17	45925852	-
In-frame	ENST00000327134	ENST00000357674		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000314062		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000346964		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000419354		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000452595		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000422288		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000448528		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000443183		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000450955		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000392382		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-intron	ENST00000327134	ENST00000485409		TCGA	LD	OV	TCGA-25-1328-01A	PAK2	chr3	196532254	+	DLG1	chr3	196876667	-
5CDS-5UTR	ENST00000209875	ENST00000552397		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000209875	ENST00000305879		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000209875	ENST00000552395		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000439541	ENST00000552397		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000439541	ENST00000305879		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000439541	ENST00000552395		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000550411	ENST00000552397		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000550411	ENST00000305879		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
5CDS-5UTR	ENST00000550411	ENST00000552395		TCGA	LD	OV	TCGA-25-1329-01A	CBX5	chr12	54645825	-	GTSF1	chr12	54865061	-
In-frame	ENST00000381340	ENST00000081029		TCGA	LD	OV	TCGA-25-1329-01A	ITPR2	chr12	26774056	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000381340	ENST00000538315		TCGA	LD	OV	TCGA-25-1329-01A	ITPR2	chr12	26774056	-	MRPS35	chr12	27888380	+
intron-3CDS	ENST00000545902	ENST00000081029		TCGA	LD	OV	TCGA-25-1329-01A	ITPR2	chr12	26774056	-	MRPS35	chr12	27888380	+
intron-intron	ENST00000545902	ENST00000538315		TCGA	LD	OV	TCGA-25-1329-01A	ITPR2	chr12	26774056	-	MRPS35	chr12	27888380	+
intron-3CDS	ENST00000242737	ENST00000081029		TCGA	LD	OV	TCGA-25-1329-01A	ITPR2	chr12	26774056	-	MRPS35	chr12	27888380	+
intron-intron	ENST00000242737	ENST00000538315		TCGA	LD	OV	TCGA-25-1329-01A	ITPR2	chr12	26774056	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000222249	ENST00000442725		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
5CDS-intron	ENST00000222249	ENST00000252595		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
5CDS-5UTR	ENST00000222249	ENST00000598424		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
5CDS-intron	ENST00000222249	ENST00000598848		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
intron-intron	ENST00000594192	ENST00000442725		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
intron-intron	ENST00000594192	ENST00000252595		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
intron-5UTR	ENST00000594192	ENST00000598424		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
intron-intron	ENST00000594192	ENST00000598848		TCGA	LD	OV	TCGA-25-1329-01A	KCNN1	chr19	18100627	+	SLC27A1	chr19	17594691	+
Frame-shit	ENST00000222219	ENST00000251472		TCGA	LD	OV	TCGA-25-1623-01A	DNASE2	chr19	12991616	-	MAST1	chr19	12984423	+
5CDS-intron	ENST00000222219	ENST00000591495		TCGA	LD	OV	TCGA-25-1623-01A	DNASE2	chr19	12991616	-	MAST1	chr19	12984423	+
Frame-shit	ENST00000538460	ENST00000251472		TCGA	LD	OV	TCGA-25-1623-01A	DNASE2	chr19	12991616	-	MAST1	chr19	12984423	+
5CDS-intron	ENST00000538460	ENST00000591495		TCGA	LD	OV	TCGA-25-1623-01A	DNASE2	chr19	12991616	-	MAST1	chr19	12984423	+
In-frame	ENST00000371730	ENST00000447632		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
In-frame	ENST00000371730	ENST00000413473		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371730	ENST00000262675		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371730	ENST00000451380		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371730	ENST00000371750		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371730	ENST00000371747		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371730	ENST00000262676		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000371730	ENST00000530004		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000371730	ENST00000534098		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
In-frame	ENST00000371733	ENST00000447632		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
In-frame	ENST00000371733	ENST00000413473		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371733	ENST00000262675		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371733	ENST00000451380		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371733	ENST00000371750		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371733	ENST00000371747		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000371733	ENST00000262676		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000371733	ENST00000530004		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000371733	ENST00000534098		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-3CDS	ENST00000396122	ENST00000447632		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-3CDS	ENST00000396122	ENST00000413473		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000396122	ENST00000262675		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000396122	ENST00000451380		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000396122	ENST00000371750		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000396122	ENST00000371747		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000396122	ENST00000262676		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-intron	ENST00000396122	ENST00000530004		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-intron	ENST00000396122	ENST00000534098		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-3CDS	ENST00000493793	ENST00000447632		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-3CDS	ENST00000493793	ENST00000413473		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000493793	ENST00000262675		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000493793	ENST00000451380		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000493793	ENST00000371750		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000493793	ENST00000371747		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000493793	ENST00000262676		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-intron	ENST00000493793	ENST00000530004		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
intron-intron	ENST00000493793	ENST00000534098		TCGA	LD	OV	TCGA-25-1623-01A	EPS15	chr1	51912632	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000330062	ENST00000268154		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000330062	ENST00000560908		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
5UTR-5UTR	ENST00000539790	ENST00000268154		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
5UTR-intron	ENST00000539790	ENST00000560908		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
5CDS-5UTR	ENST00000559482	ENST00000268154		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000559482	ENST00000560908		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000540499	ENST00000268154		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
intron-intron	ENST00000540499	ENST00000560908		TCGA	LD	OV	TCGA-25-1626-01A	IDH2	chr15	90645508	-	ZNF710	chr15	90610342	+
In-frame	ENST00000312962	ENST00000585892		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000312962	ENST00000314646		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000312962	ENST00000359692		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000312962	ENST00000389253		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000312962	ENST00000355667		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000312962	ENST00000408974		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5CDS-intron	ENST00000312962	ENST00000591819		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000361821	ENST00000585892		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000361821	ENST00000314646		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000361821	ENST00000359692		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000361821	ENST00000389253		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000361821	ENST00000355667		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000361821	ENST00000408974		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5CDS-intron	ENST00000361821	ENST00000591819		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000537964	ENST00000585892		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000537964	ENST00000314646		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000537964	ENST00000359692		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000537964	ENST00000389253		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000537964	ENST00000355667		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-3CDS	ENST00000537964	ENST00000408974		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
5UTR-intron	ENST00000537964	ENST00000591819		TCGA	LD	OV	TCGA-25-1626-01A	KRI1	chr19	10672343	-	DNM2	chr19	10916592	+
In-frame	ENST00000263674	ENST00000294053		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
In-frame	ENST00000263674	ENST00000538039		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
In-frame	ENST00000263674	ENST00000437826		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
In-frame	ENST00000263674	ENST00000340729		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
In-frame	ENST00000263674	ENST00000543042		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
5CDS-intron	ENST00000263674	ENST00000445069		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
5CDS-intron	ENST00000263674	ENST00000538021		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
5CDS-intron	ENST00000263674	ENST00000542555		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-3CDS	ENST00000536170	ENST00000294053		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-3CDS	ENST00000536170	ENST00000538039		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-3CDS	ENST00000536170	ENST00000437826		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-3CDS	ENST00000536170	ENST00000340729		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-3CDS	ENST00000536170	ENST00000543042		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-intron	ENST00000536170	ENST00000445069		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-intron	ENST00000536170	ENST00000538021		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
intron-intron	ENST00000536170	ENST00000542555		TCGA	LD	OV	TCGA-25-1627-01A	ARHGEF17	chr11	73022875	+	CLPB	chr11	72028264	-
5CDS-5UTR	ENST00000294053	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000294053	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000294053	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000538039	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000538039	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000538039	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000437826	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000437826	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000437826	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000340729	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000340729	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000340729	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000543042	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000543042	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000543042	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
intron-5UTR	ENST00000445069	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
intron-5UTR	ENST00000445069	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
intron-5UTR	ENST00000445069	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000538021	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000538021	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
5CDS-5UTR	ENST00000538021	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
intron-5UTR	ENST00000542555	ENST00000450904		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
intron-5UTR	ENST00000542555	ENST00000362034		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
intron-5UTR	ENST00000542555	ENST00000567045		TCGA	LD	OV	TCGA-25-1627-01A	CLPB	chr11	72012847	-	MRPL21	chr11	68665480	-
Frame-shit	ENST00000542081	ENST00000390240		TCGA	LD	OV	TCGA-25-1627-01A	IGKV1OR2-108	chr2	114164446	+	IGKJ3	chr2	89160770	-
In-frame	ENST00000372733	ENST00000372726		TCGA	LD	OV	TCGA-25-1627-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
In-frame	ENST00000372733	ENST00000537995		TCGA	LD	OV	TCGA-25-1627-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5CDS-5UTR	ENST00000372733	ENST00000494455		TCGA	LD	OV	TCGA-25-1627-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5UTR-3CDS	ENST00000537976	ENST00000372726		TCGA	LD	OV	TCGA-25-1627-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5UTR-3CDS	ENST00000537976	ENST00000537995		TCGA	LD	OV	TCGA-25-1627-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5UTR-5UTR	ENST00000537976	ENST00000494455		TCGA	LD	OV	TCGA-25-1627-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
intron-intron	ENST00000534307	ENST00000535750		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
intron-intron	ENST00000534307	ENST00000535126		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
intron-5UTR	ENST00000534307	ENST00000544844		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
intron-intron	ENST00000534307	ENST00000308774		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
intron-intron	ENST00000534307	ENST00000539854		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000528302	ENST00000535750		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000528302	ENST00000535126		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-5UTR	ENST00000528302	ENST00000544844		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000528302	ENST00000308774		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000528302	ENST00000539854		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000322535	ENST00000535750		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000322535	ENST00000535126		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-5UTR	ENST00000322535	ENST00000544844		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000322535	ENST00000308774		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-intron	ENST00000322535	ENST00000539854		TCGA	LD	OV	TCGA-25-1627-01A	SF3B2	chr11	65819988	+	TRMT112	chr11	64085144	-
5CDS-5UTR	ENST00000340353	ENST00000340067		TCGA	LD	OV	TCGA-25-1627-01A	TMEM135	chr11	86802437	+	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000532959	ENST00000340067		TCGA	LD	OV	TCGA-25-1627-01A	TMEM135	chr11	86802437	+	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000305494	ENST00000340067		TCGA	LD	OV	TCGA-25-1627-01A	TMEM135	chr11	86802437	+	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000535167	ENST00000340067		TCGA	LD	OV	TCGA-25-1627-01A	TMEM135	chr11	86802437	+	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000355734	ENST00000340067		TCGA	LD	OV	TCGA-25-1627-01A	TMEM135	chr11	86802437	+	KCTD21	chr11	77885629	-
Frame-shit	ENST00000399537	ENST00000399583		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
In-frame	ENST00000399537	ENST00000536091		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
5CDS-5UTR	ENST00000399537	ENST00000538469		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
Frame-shit	ENST00000430969	ENST00000399583		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
In-frame	ENST00000430969	ENST00000536091		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
5CDS-5UTR	ENST00000430969	ENST00000538469		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
intron-3CDS	ENST00000399434	ENST00000399583		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
intron-3CDS	ENST00000399434	ENST00000536091		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
intron-5UTR	ENST00000399434	ENST00000538469		TCGA	LD	OV	TCGA-25-1627-01A	TNRC18	chr7	5391450	-	RADIL	chr7	4876236	-
5CDS-intron	ENST00000372759	ENST00000355387		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
5CDS-intron	ENST00000372759	ENST00000361799		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
5CDS-intron	ENST00000372759	ENST00000372247		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
5CDS-intron	ENST00000372759	ENST00000443020		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
5CDS-intron	ENST00000372759	ENST00000480686		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
intron-intron	ENST00000479131	ENST00000355387		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
intron-intron	ENST00000479131	ENST00000361799		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
intron-intron	ENST00000479131	ENST00000372247		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
intron-intron	ENST00000479131	ENST00000443020		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
intron-intron	ENST00000479131	ENST00000480686		TCGA	LD	OV	TCGA-25-1628-01A	ZMPSTE24	chr1	40734207	+	RNF220	chr1	44884976	+
Frame-shit	ENST00000251157	ENST00000371129		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
5CDS-intron	ENST00000251157	ENST00000493994		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
Frame-shit	ENST00000340370	ENST00000371129		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
5CDS-intron	ENST00000340370	ENST00000493994		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
intron-3CDS	ENST00000489185	ENST00000371129		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
intron-intron	ENST00000489185	ENST00000493994		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
Frame-shit	ENST00000404627	ENST00000371129		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
5CDS-intron	ENST00000404627	ENST00000493994		TCGA	LD	OV	TCGA-25-1630-01A	DOCK7	chr1	63153898	-	ANGPTL3	chr1	63063278	+
In-frame	ENST00000381061	ENST00000227524		TCGA	LD	OV	TCGA-25-1631-01A	ATXN10	chr22	46136418	+	PRPF19	chr11	60669012	-
In-frame	ENST00000252934	ENST00000227524		TCGA	LD	OV	TCGA-25-1631-01A	ATXN10	chr22	46136418	+	PRPF19	chr11	60669012	-
intron-3CDS	ENST00000498009	ENST00000227524		TCGA	LD	OV	TCGA-25-1631-01A	ATXN10	chr22	46136418	+	PRPF19	chr11	60669012	-
intron-3CDS	ENST00000402380	ENST00000227524		TCGA	LD	OV	TCGA-25-1631-01A	ATXN10	chr22	46136418	+	PRPF19	chr11	60669012	-
3UTR-3CDS	ENST00000318003	ENST00000254323		TCGA	LD	OV	TCGA-25-1631-01A	CC2D1A	chr19	14041398	+	ZSWIM4	chr19	13934160	+
3UTR-3CDS	ENST00000318003	ENST00000440752		TCGA	LD	OV	TCGA-25-1631-01A	CC2D1A	chr19	14041398	+	ZSWIM4	chr19	13934160	+
3UTR-3CDS	ENST00000589606	ENST00000254323		TCGA	LD	OV	TCGA-25-1631-01A	CC2D1A	chr19	14041398	+	ZSWIM4	chr19	13934160	+
3UTR-3CDS	ENST00000589606	ENST00000440752		TCGA	LD	OV	TCGA-25-1631-01A	CC2D1A	chr19	14041398	+	ZSWIM4	chr19	13934160	+
Frame-shit	ENST00000394906	ENST00000332830		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-3UTR	ENST00000394906	ENST00000577226		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000394906	ENST00000268756		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000394906	ENST00000582655		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
Frame-shit	ENST00000394908	ENST00000332830		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-3UTR	ENST00000394908	ENST00000577226		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000394908	ENST00000268756		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000394908	ENST00000582655		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
Frame-shit	ENST00000585169	ENST00000332830		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-3UTR	ENST00000585169	ENST00000577226		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000585169	ENST00000268756		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5CDS-intron	ENST00000585169	ENST00000582655		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5UTR-3CDS	ENST00000577789	ENST00000332830		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5UTR-3UTR	ENST00000577789	ENST00000577226		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5UTR-intron	ENST00000577789	ENST00000268756		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
5UTR-intron	ENST00000577789	ENST00000582655		TCGA	LD	OV	TCGA-25-1631-01A	FLOT2	chr17	27224544	-	PHF12	chr17	27235899	-
In-frame	ENST00000359282	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000359282	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000359282	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000359282	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000603815	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000603815	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000603815	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000603815	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000437231	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000437231	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000437231	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000437231	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000447282	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000447282	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000447282	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000447282	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000549863	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000549863	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000549863	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000549863	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000359462	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000359462	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000359462	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000359462	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000546463	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000546463	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000546463	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000546463	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000552296	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000552296	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000552296	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000552296	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000552819	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000552819	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000552819	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000552819	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000455667	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000455667	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000455667	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000455667	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000439930	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000439930	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000439930	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000439930	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000548933	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000548933	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000548933	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000548933	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000541275	ENST00000551018		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
In-frame	ENST00000541275	ENST00000351500		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000541275	ENST00000550846		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5CDS-intron	ENST00000541275	ENST00000334478		TCGA	LD	OV	TCGA-25-1631-01A	PCBP2	chr12	53856351	+	PFDN5	chr12	53691634	+
5UTR-intron	ENST00000243563	ENST00000262895		TCGA	LD	OV	TCGA-25-1631-01A	SNRPA	chr19	41256882	+	GRIK5	chr19	42569972	-
5UTR-5UTR	ENST00000243563	ENST00000593562		TCGA	LD	OV	TCGA-25-1631-01A	SNRPA	chr19	41256882	+	GRIK5	chr19	42569972	-
5UTR-intron	ENST00000243563	ENST00000301218		TCGA	LD	OV	TCGA-25-1631-01A	SNRPA	chr19	41256882	+	GRIK5	chr19	42569972	-
3UTR-intron	ENST00000599570	ENST00000262895		TCGA	LD	OV	TCGA-25-1631-01A	SNRPA	chr19	41256882	+	GRIK5	chr19	42569972	-
3UTR-5UTR	ENST00000599570	ENST00000593562		TCGA	LD	OV	TCGA-25-1631-01A	SNRPA	chr19	41256882	+	GRIK5	chr19	42569972	-
3UTR-intron	ENST00000599570	ENST00000301218		TCGA	LD	OV	TCGA-25-1631-01A	SNRPA	chr19	41256882	+	GRIK5	chr19	42569972	-
In-frame	ENST00000341657	ENST00000301244		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000341657	ENST00000587090		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000341657	ENST00000454580		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
In-frame	ENST00000570535	ENST00000301244		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000570535	ENST00000587090		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000570535	ENST00000454580		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
In-frame	ENST00000574367	ENST00000301244		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000574367	ENST00000587090		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000574367	ENST00000454580		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000573722	ENST00000301244		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000573722	ENST00000587090		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
intron-intron	ENST00000573722	ENST00000454580		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000433651	ENST00000301244		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000433651	ENST00000587090		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
intron-intron	ENST00000433651	ENST00000454580		TCGA	LD	OV	TCGA-25-1632-01A	ANKFY1	chr17	4077204	-	SPINT2	chr19	38774267	+
Frame-shit	ENST00000551492	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
5CDS-intron	ENST00000551492	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000346562	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000346562	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000341321	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000341321	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000548645	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000548645	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000356141	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000356141	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000357798	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000357798	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000547068	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000547068	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000551008	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000551008	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-3CDS	ENST00000550662	ENST00000267163		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
intron-intron	ENST00000550662	ENST00000484879		TCGA	LD	OV	TCGA-25-1632-01A	NPAS3	chr14	33404209	+	RB1	chr13	49039134	+
5CDS-5UTR	ENST00000295797	ENST00000335556		TCGA	LD	OV	TCGA-25-1632-01A	PRKCI	chr3	169940558	+	SAMD7	chr3	169629521	+
5CDS-5UTR	ENST00000295797	ENST00000428432		TCGA	LD	OV	TCGA-25-1632-01A	PRKCI	chr3	169940558	+	SAMD7	chr3	169629521	+
Frame-shit	ENST00000373023	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
Frame-shit	ENST00000373023	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
Frame-shit	ENST00000373023	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373023	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373023	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373023	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373023	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373023	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373023	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
In-frame	ENST00000373026	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
In-frame	ENST00000373026	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
In-frame	ENST00000373026	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373026	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373026	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373026	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373026	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373026	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373026	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
Frame-shit	ENST00000373024	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
Frame-shit	ENST00000373024	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
Frame-shit	ENST00000373024	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373024	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373024	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373024	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373024	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373024	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373024	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000373021	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000373021	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000373021	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000373021	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000373021	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000373021	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000373021	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000373021	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000373021	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
In-frame	ENST00000373027	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
In-frame	ENST00000373027	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
In-frame	ENST00000373027	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373027	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373027	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373027	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373027	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373027	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
5CDS-intron	ENST00000373027	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000458109	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000458109	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000458109	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000458109	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000458109	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000458109	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000458109	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000458109	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000458109	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000467066	ENST00000441669		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000467066	ENST00000316891		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000467066	ENST00000372818		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000467066	ENST00000491865		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000467066	ENST00000541099		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000467066	ENST00000537440		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000467066	ENST00000537223		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000467066	ENST00000545233		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-intron	ENST00000467066	ENST00000544981		TCGA	LD	OV	TCGA-25-1633-01A	INPP5B	chr1	38351310	-	TRIT1	chr1	40313332	-
intron-3CDS	ENST00000545844	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000545844	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000567887	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000567887	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000372915	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000372915	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000361689	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000361689	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000539005	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000539005	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000317713	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000317713	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000564288	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000564288	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000289893	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000289893	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000536367	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000536367	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000484793	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000484793	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000602421	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000602421	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000476350	ENST00000367511		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-intron	ENST00000476350	ENST00000487074		TCGA	LD	OV	TCGA-25-1633-01A	MACF1	chr1	39571389	+	FAM129A	chr1	184868442	-
intron-3CDS	ENST00000359008	ENST00000371839		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000359008	ENST00000371838		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000359008	ENST00000371836		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-intron	ENST00000359008	ENST00000334103		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-5UTR	ENST00000359008	ENST00000497451		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
Frame-shit	ENST00000328189	ENST00000371839		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
Frame-shit	ENST00000328189	ENST00000371838		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
Frame-shit	ENST00000328189	ENST00000371836		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5CDS-intron	ENST00000328189	ENST00000334103		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5CDS-5UTR	ENST00000328189	ENST00000497451		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
Frame-shit	ENST00000369458	ENST00000371839		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
Frame-shit	ENST00000369458	ENST00000371838		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
Frame-shit	ENST00000369458	ENST00000371836		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5CDS-intron	ENST00000369458	ENST00000334103		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5CDS-5UTR	ENST00000369458	ENST00000497451		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000539893	ENST00000371839		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000539893	ENST00000371838		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-3CDS	ENST00000539893	ENST00000371836		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-intron	ENST00000539893	ENST00000334103		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
intron-5UTR	ENST00000539893	ENST00000497451		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5UTR-3CDS	ENST00000463461	ENST00000371839		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5UTR-3CDS	ENST00000463461	ENST00000371838		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5UTR-3CDS	ENST00000463461	ENST00000371836		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5UTR-intron	ENST00000463461	ENST00000334103		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
5UTR-5UTR	ENST00000463461	ENST00000497451		TCGA	LD	OV	TCGA-25-1633-01A	VTCN1	chr1	117753446	-	AGBL4	chr1	50163109	-
In-frame	ENST00000325241	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325241	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325241	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325241	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000325241	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5UTR-3CDS	ENST00000544249	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5UTR-3CDS	ENST00000544249	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5UTR-3CDS	ENST00000544249	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5UTR-3CDS	ENST00000544249	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5UTR-3UTR	ENST00000544249	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000446747	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000446747	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000446747	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000446747	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000446747	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000525266	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000525266	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000525266	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000525266	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000525266	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325217	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325217	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325217	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000325217	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000325217	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000529819	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000529819	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000529819	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000529819	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000529819	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
3UTR-3CDS	ENST00000532393	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
3UTR-3CDS	ENST00000532393	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
3UTR-3CDS	ENST00000532393	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
3UTR-3CDS	ENST00000532393	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
3UTR-3UTR	ENST00000532393	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528372	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528372	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528372	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528372	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000528372	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528130	ENST00000324379		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528130	ENST00000356511		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528130	ENST00000470213		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
In-frame	ENST00000528130	ENST00000372830		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
5CDS-3UTR	ENST00000528130	ENST00000480169		TCGA	LD	OV	TCGA-25-1633-01A	ZNF7	chr8	146062892	+	PPIE	chr1	40205837	+
intron-5UTR	ENST00000369066	ENST00000369042		TCGA	LD	OV	TCGA-25-1634-01A	AIM1	chr6	106808956	+	BEND3	chr6	107420500	-
intron-5UTR	ENST00000369066	ENST00000429433		TCGA	LD	OV	TCGA-25-1634-01A	AIM1	chr6	106808956	+	BEND3	chr6	107420500	-
intron-5UTR	ENST00000535438	ENST00000369042		TCGA	LD	OV	TCGA-25-1634-01A	AIM1	chr6	106808956	+	BEND3	chr6	107420500	-
intron-5UTR	ENST00000535438	ENST00000429433		TCGA	LD	OV	TCGA-25-1634-01A	AIM1	chr6	106808956	+	BEND3	chr6	107420500	-
intron-5UTR	ENST00000487681	ENST00000369042		TCGA	LD	OV	TCGA-25-1634-01A	AIM1	chr6	106808956	+	BEND3	chr6	107420500	-
intron-5UTR	ENST00000487681	ENST00000429433		TCGA	LD	OV	TCGA-25-1634-01A	AIM1	chr6	106808956	+	BEND3	chr6	107420500	-
5UTR-5UTR	ENST00000392038	ENST00000306621		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
5UTR-5UTR	ENST00000392038	ENST00000503860		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000424901	ENST00000306621		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000424901	ENST00000503860		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000311278	ENST00000306621		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000311278	ENST00000503860		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
5UTR-5UTR	ENST00000579047	ENST00000306621		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
5UTR-5UTR	ENST00000579047	ENST00000503860		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000581582	ENST00000306621		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000581582	ENST00000503860		TCGA	LD	OV	TCGA-25-1635-01A	AKT2	chr19	40791088	-	CXCL11	chr4	76957217	-
intron-3CDS	ENST00000545260	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000545260	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000545260	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000545693	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000545693	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000545693	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000350537	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000350537	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000350537	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000346874	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000346874	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000346874	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000374789	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374789	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374789	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3CDS	ENST00000374790	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000374790	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000374790	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3CDS	ENST00000374794	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000374794	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000374794	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000374788	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374788	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374788	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3CDS	ENST00000466092	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000466092	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000466092	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000374776	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374776	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374776	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000340077	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000340077	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000340077	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3CDS	ENST00000544292	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000544292	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000544292	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
Frame-shit	ENST00000374773	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374773	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-3UTR	ENST00000374773	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3CDS	ENST00000374768	ENST00000378847		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000374768	ENST00000487696		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
intron-3UTR	ENST00000374768	ENST00000378845		TCGA	LD	OV	TCGA-25-1635-01A	PARD3	chr10	34739245	-	CAMK1D	chr10	12708735	+
5CDS-intron	ENST00000261200	ENST00000408915		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000402589		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000339686		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000436012		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000414866		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000480502		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000467637		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000429837		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261200	ENST00000419602		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000462126		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000443640		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000472252		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000492341		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000602781		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000474928		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000488892		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000461300		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000447113		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000392206		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000440396		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000458071		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000418261		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000424570		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261200	ENST00000451297		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000408915		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000402589		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000339686		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000436012		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000414866		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000480502		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000467637		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000429837		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000261201	ENST00000419602		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000462126		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000443640		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000472252		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000492341		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000602781		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000474928		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000488892		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000461300		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000447113		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000392206		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000440396		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000458071		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000418261		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000424570		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000261201	ENST00000451297		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000408915		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000402589		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000339686		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000436012		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000414866		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000480502		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000467637		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000429837		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-intron	ENST00000345162	ENST00000419602		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000462126		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000443640		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000472252		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000492341		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000602781		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000474928		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000488892		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000461300		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000447113		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000392206		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000440396		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000458071		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000418261		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000424570		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
5CDS-5UTR	ENST00000345162	ENST00000451297		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000408915		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000402589		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000339686		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000436012		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000414866		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000480502		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000467637		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000429837		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000326684	ENST00000419602		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000462126		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000443640		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000472252		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000492341		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000602781		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000474928		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000488892		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000461300		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000447113		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000392206		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000440396		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000458071		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000418261		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000424570		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000326684	ENST00000451297		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000408915		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000402589		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000339686		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000436012		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000414866		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000480502		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000467637		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000429837		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-intron	ENST00000538350	ENST00000419602		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000462126		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000443640		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000472252		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000492341		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000602781		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000474928		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000488892		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000461300		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000447113		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000392206		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000440396		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000458071		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000418261		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000424570		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
intron-5UTR	ENST00000538350	ENST00000451297		TCGA	LD	OV	TCGA-25-1870-01A	ABCC9	chr12	22028588	-	DMKN	chr19	35996888	-
3UTR-3CDS	ENST00000595419	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
3UTR-3CDS	ENST00000595419	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
3UTR-3CDS	ENST00000595419	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
3UTR-3CDS	ENST00000595419	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
3UTR-intron	ENST00000595419	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000341773	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000341773	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000341773	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000341773	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-intron	ENST00000341773	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000270311	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000270311	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000270311	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000270311	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-intron	ENST00000270311	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000536635	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000536635	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000536635	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000536635	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-intron	ENST00000536635	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000085219	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000085219	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000085219	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000085219	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-intron	ENST00000085219	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000419549	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000419549	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000419549	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000419549	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-intron	ENST00000419549	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000544992	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000544992	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000544992	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-3CDS	ENST00000544992	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5UTR-intron	ENST00000544992	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
intron-3CDS	ENST00000594250	ENST00000383710		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
intron-3CDS	ENST00000594250	ENST00000357948		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
intron-3CDS	ENST00000594250	ENST00000283269		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
intron-3CDS	ENST00000594250	ENST00000490353		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
intron-intron	ENST00000594250	ENST00000462768		TCGA	LD	OV	TCGA-25-1870-01A	CD22	chr19	35820133	+	CADPS	chr3	62751659	-
5CDS-5UTR	ENST00000262809	ENST00000609686		TCGA	LD	OV	TCGA-25-1870-01A	ELL	chr19	18632731	-	GRIN2B	chr12	14019160	-
intron-5UTR	ENST00000596124	ENST00000609686		TCGA	LD	OV	TCGA-25-1870-01A	ELL	chr19	18632731	-	GRIN2B	chr12	14019160	-
5CDS-intron	ENST00000546136	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000546136	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000546136	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000381381	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000381381	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000381381	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000309359	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000309359	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000309359	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000451604	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000451604	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000451604	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000537393	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000537393	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000537393	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000541536	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000541536	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000541536	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-intron	ENST00000396007	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000396007	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000396007	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-intron	ENST00000545921	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000545921	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
5CDS-5UTR	ENST00000545921	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-intron	ENST00000541847	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000541847	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000541847	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-intron	ENST00000441133	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000441133	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000441133	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-intron	ENST00000536850	ENST00000601590		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000536850	ENST00000599180		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
intron-5UTR	ENST00000536850	ENST00000246549		TCGA	LD	OV	TCGA-25-1870-01A	SOX5	chr12	23818378	-	FFAR2	chr19	35940616	+
In-frame	ENST00000566936	ENST00000219207		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
5CDS-intron	ENST00000566936	ENST00000569059		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
Frame-shit	ENST00000340099	ENST00000219207		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
5CDS-intron	ENST00000340099	ENST00000569059		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
In-frame	ENST00000569548	ENST00000219207		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
5CDS-intron	ENST00000569548	ENST00000569059		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
5UTR-3CDS	ENST00000561918	ENST00000219207		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
5UTR-intron	ENST00000561918	ENST00000569059		TCGA	LD	OV	TCGA-25-1871-01A	DOK4	chr16	57513354	-	PLLP	chr16	57295982	-
intron-3CDS	ENST00000293872	ENST00000306357		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000293872	ENST00000574431		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000293872	ENST00000573373		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-3CDS	ENST00000337351	ENST00000306357		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000337351	ENST00000574431		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000337351	ENST00000573373		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-3CDS	ENST00000397783	ENST00000306357		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000397783	ENST00000574431		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000397783	ENST00000573373		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-3CDS	ENST00000397780	ENST00000306357		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000397780	ENST00000574431		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000397780	ENST00000573373		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-3CDS	ENST00000494366	ENST00000306357		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000494366	ENST00000574431		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
intron-5UTR	ENST00000494366	ENST00000573373		TCGA	LD	OV	TCGA-25-1871-01A	LUC7L	chr16	239228	-	STX8	chr17	9460845	-
In-frame	ENST00000582783	ENST00000262631		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
In-frame	ENST00000582783	ENST00000595652		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
In-frame	ENST00000582783	ENST00000415950		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
5CDS-3UTR	ENST00000582783	ENST00000596348		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000392035	ENST00000262631		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000392035	ENST00000595652		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000392035	ENST00000415950		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000392035	ENST00000596348		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000584868	ENST00000262631		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000584868	ENST00000595652		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3CDS	ENST00000584868	ENST00000415950		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
intron-3UTR	ENST00000584868	ENST00000596348		TCGA	LD	OV	TCGA-25-1877-01A	C19orf47	chr19	40847746	-	SCN1B	chr19	35523432	+
5CDS-5UTR	ENST00000543307	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000543307	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000543307	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000543307	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000543307	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000543307	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000543307	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000543307	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392219	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000392219	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000541435	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000541435	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000590686	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000590686	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000342879	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000342879	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000588699	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000588699	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000423817	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000423817	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000392218	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-3UTR	ENST00000392218	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000591716	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-3UTR	ENST00000591716	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000352456		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000595018		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000392006		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000378215		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000602130		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000593587		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-5UTR	ENST00000392217	ENST00000263367		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
intron-3UTR	ENST00000392217	ENST00000594207		TCGA	LD	OV	TCGA-25-1877-01A	FXYD5	chr19	35648404	+	HNRNPUL1	chr19	41774128	+
5CDS-5UTR	ENST00000470487	ENST00000351008		TCGA	LD	OV	TCGA-25-1877-01A	GOLIM4	chr3	167812887	-	SPATA16	chr3	172835539	-
5CDS-5UTR	ENST00000309027	ENST00000351008		TCGA	LD	OV	TCGA-25-1877-01A	GOLIM4	chr3	167812887	-	SPATA16	chr3	172835539	-
5UTR-intron	ENST00000352456	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
5UTR-intron	ENST00000595018	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
intron-intron	ENST00000392006	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
intron-intron	ENST00000378215	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
intron-intron	ENST00000602130	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
intron-intron	ENST00000593587	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
intron-intron	ENST00000263367	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
intron-intron	ENST00000594207	ENST00000606380		TCGA	LD	OV	TCGA-25-1877-01A	HNRNPUL1	chr19	41768487	+	IFNL4	chr19	39739227	-
5CDS-5UTR	ENST00000246548	ENST00000456324		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-3UTR	ENST00000246548	ENST00000586094		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-5UTR	ENST00000246548	ENST00000443387		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-5UTR	ENST00000439527	ENST00000456324		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-3UTR	ENST00000439527	ENST00000586094		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-5UTR	ENST00000439527	ENST00000443387		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-5UTR	ENST00000592791	ENST00000456324		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-3UTR	ENST00000592791	ENST00000586094		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
5CDS-5UTR	ENST00000592791	ENST00000443387		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
intron-5UTR	ENST00000588585	ENST00000456324		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
intron-3UTR	ENST00000588585	ENST00000586094		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
intron-5UTR	ENST00000588585	ENST00000443387		TCGA	LD	OV	TCGA-25-1877-01A	UBA2	chr19	34955036	+	ZNF146	chr19	36726561	+
Frame-shit	ENST00000308683	ENST00000306320		TCGA	LD	OV	TCGA-25-2042-01A	ZNF622	chr5	16463217	-	FAM134B	chr5	16477897	-
Frame-shit	ENST00000308683	ENST00000399793		TCGA	LD	OV	TCGA-25-2042-01A	ZNF622	chr5	16463217	-	FAM134B	chr5	16477897	-
5CDS-intron	ENST00000308683	ENST00000509048		TCGA	LD	OV	TCGA-25-2042-01A	ZNF622	chr5	16463217	-	FAM134B	chr5	16477897	-
Frame-shit	ENST00000343470	ENST00000382952		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
Frame-shit	ENST00000343470	ENST00000290921		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
5CDS-intron	ENST00000343470	ENST00000510568		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
5CDS-intron	ENST00000343470	ENST00000515690		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
Frame-shit	ENST00000452476	ENST00000382952		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
Frame-shit	ENST00000452476	ENST00000290921		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
5CDS-intron	ENST00000452476	ENST00000510568		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
5CDS-intron	ENST00000452476	ENST00000515690		TCGA	LD	OV	TCGA-25-2391-01A	LYAR	chr4	4285348	-	CTBP1	chr4	1222131	-
5UTR-3CDS	ENST00000419152	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000419152	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000419152	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000419152	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000419152	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000419152	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000419152	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000532400	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000532400	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000532400	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000532400	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000532400	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000532400	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000532400	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-3CDS	ENST00000532741	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000532741	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000532741	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000532741	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000532741	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000532741	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000532741	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-3CDS	ENST00000317198	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000317198	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000317198	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000317198	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000317198	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000317198	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
intron-5UTR	ENST00000317198	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000526838	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000526838	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000526838	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000526838	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000526838	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000526838	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000526838	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000442189	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000442189	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000442189	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000442189	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000442189	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000442189	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000442189	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000528610	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000528610	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000528610	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000528610	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000528610	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000528610	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000528610	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000423316	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000423316	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000423316	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000423316	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000423316	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000423316	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000423316	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000395119	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395119	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395119	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395119	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395119	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395119	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395119	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000529272	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000529272	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000529272	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000529272	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000529272	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000529272	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000529272	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000531621	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531621	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531621	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531621	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531621	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531621	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531621	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000524624	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000524624	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000524624	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000524624	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000524624	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000524624	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000524624	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-3CDS	ENST00000531770	ENST00000526683		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531770	ENST00000453551		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531770	ENST00000313352		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531770	ENST00000456095		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531770	ENST00000349157		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531770	ENST00000527197		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000531770	ENST00000524570		TCGA	LD	OV	TCGA-25-2392-01A	EEF1D	chr8	144679518	-	PUF60	chr8	144904083	-
5UTR-5UTR	ENST00000395309	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-intron	ENST00000395309	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000395309	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000413890	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-intron	ENST00000413890	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000413890	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000438792	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-intron	ENST00000438792	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000438792	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000395314	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-intron	ENST00000395314	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000395314	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000395308	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-intron	ENST00000395308	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5UTR-5UTR	ENST00000395308	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000395311	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000395311	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000395311	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000416613	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000416613	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000416613	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000554507	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000554507	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000554507	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000555573	ENST00000254301		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-intron	ENST00000555573	ENST00000553755		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
intron-5UTR	ENST00000555573	ENST00000554715		TCGA	LD	OV	TCGA-25-2392-01A	KTN1	chr14	56047072	+	LGALS3	chr14	55604088	+
5CDS-3UTR	ENST00000408978	ENST00000371497		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000408978	ENST00000603338		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000408978	ENST00000329613		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000409044	ENST00000371497		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000409044	ENST00000603338		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000409044	ENST00000329613		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000334231	ENST00000371497		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000334231	ENST00000603338		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000334231	ENST00000329613		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000602629	ENST00000371497		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000602629	ENST00000603338		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000602629	ENST00000329613		TCGA	LD	OV	TCGA-25-2392-01A	MYO3B	chr2	171092646	+	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000409798	ENST00000332142		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
Frame-shit	ENST00000409798	ENST00000328032		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
5CDS-intron	ENST00000409798	ENST00000477019		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
Frame-shit	ENST00000295119	ENST00000332142		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
Frame-shit	ENST00000295119	ENST00000328032		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
5CDS-intron	ENST00000295119	ENST00000477019		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
Frame-shit	ENST00000541912	ENST00000332142		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
Frame-shit	ENST00000541912	ENST00000328032		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
5CDS-intron	ENST00000541912	ENST00000477019		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
intron-3CDS	ENST00000497330	ENST00000332142		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
intron-3CDS	ENST00000497330	ENST00000328032		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
intron-intron	ENST00000497330	ENST00000477019		TCGA	LD	OV	TCGA-25-2392-01A	NUP35	chr2	184016377	+	KCNH7	chr2	163292107	-
intron-3CDS	ENST00000486542	ENST00000396913		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000486542	ENST00000263038		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000486542	ENST00000396920		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000396900	ENST00000396913		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000396900	ENST00000263038		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000396900	ENST00000396920		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000341083	ENST00000396913		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000341083	ENST00000263038		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000341083	ENST00000396920		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000396898	ENST00000396913		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000396898	ENST00000263038		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000396898	ENST00000396920		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000378605	ENST00000396913		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000378605	ENST00000263038		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
intron-3CDS	ENST00000378605	ENST00000396920		TCGA	LD	OV	TCGA-25-2393-01A	BEND7	chr10	13568138	-	PHYH	chr10	13323110	-
Frame-shit	ENST00000403681	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000403681	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000403681	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000541363	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000541363	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000541363	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000393577	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000393577	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000393577	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000393578	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000393578	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000393578	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000425208	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000425208	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000425208	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000536545	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000536545	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000536545	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000354636	ENST00000348943		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
Frame-shit	ENST00000354636	ENST00000325495		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000354636	ENST00000602219		TCGA	LD	OV	TCGA-25-2393-01A	HMGA2	chr12	66221867	+	HNRNPM	chr19	8520289	+
5CDS-intron	ENST00000415083	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000415083	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000415083	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000415083	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000415083	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000415083	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000415083	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000415083	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000415083	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542420	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542420	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542420	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542420	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542420	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542420	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542420	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542420	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542420	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542743	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542743	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542743	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542743	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000542743	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542743	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542743	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542743	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000542743	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000539849	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000539849	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000539849	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000539849	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000539849	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000539849	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000539849	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000539849	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000539849	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000269137	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000269137	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000269137	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000269137	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000269137	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000269137	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000269137	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000269137	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000269137	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000545952	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000545952	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000545952	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000545952	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-3UTR	ENST00000545952	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000545952	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000545952	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000545952	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5CDS-intron	ENST00000545952	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-intron	ENST00000585241	ENST00000339021		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-3UTR	ENST00000585241	ENST00000355803		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-3UTR	ENST00000585241	ENST00000325437		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-3UTR	ENST00000585241	ENST00000397514		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-3UTR	ENST00000585241	ENST00000397515		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-intron	ENST00000585241	ENST00000403747		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-intron	ENST00000585241	ENST00000566587		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-intron	ENST00000585241	ENST00000406620		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
5UTR-intron	ENST00000585241	ENST00000402301		TCGA	LD	OV	TCGA-25-2393-01A	SS18	chr18	23632588	-	UBE2I	chr16	1376833	+
intron-5UTR	ENST00000263377	ENST00000269703		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
intron-intron	ENST00000263377	ENST00000601005		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
intron-5UTR	ENST00000371835	ENST00000269703		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
intron-intron	ENST00000371835	ENST00000601005		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
5UTR-5UTR	ENST00000360016	ENST00000269703		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
5UTR-intron	ENST00000360016	ENST00000601005		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
intron-5UTR	ENST00000602230	ENST00000269703		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
intron-intron	ENST00000602230	ENST00000601005		TCGA	LD	OV	TCGA-25-2396-01A	BRD4	chr19	15443101	-	CYP4F22	chr19	15634504	+
5UTR-5UTR	ENST00000378609	ENST00000341426		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000341991		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000378625		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000344463		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000492768		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000378609	ENST00000342348		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341426		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341991		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000378625		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000344463		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000492768		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000472614	ENST00000342348		TCGA	LD	OV	TCGA-25-2396-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
intron-5UTR	ENST00000539317	ENST00000372797		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000539317	ENST00000372802		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000539317	ENST00000372792		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000539317	ENST00000372798		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000539317	ENST00000340450		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000539317	ENST00000372805		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-intron	ENST00000539317	ENST00000479759		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000487871	ENST00000372797		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000487871	ENST00000372802		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000487871	ENST00000372792		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000487871	ENST00000372798		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000487871	ENST00000340450		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-5UTR	ENST00000487871	ENST00000372805		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-intron	ENST00000487871	ENST00000479759		TCGA	LD	OV	TCGA-25-2396-01A	SMAP2	chr1	40839895	+	CAP1	chr1	40525009	+
intron-3CDS	ENST00000530124	ENST00000255681		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-intron	ENST00000530124	ENST00000538595		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-3CDS	ENST00000257247	ENST00000255681		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-intron	ENST00000257247	ENST00000538595		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-3CDS	ENST00000525875	ENST00000255681		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-intron	ENST00000525875	ENST00000538595		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-3CDS	ENST00000378024	ENST00000255681		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-intron	ENST00000378024	ENST00000538595		TCGA	LD	OV	TCGA-25-2397-01A	AHNAK	chr11	62286437	-	MACROD1	chr11	63767767	-
intron-3CDS	ENST00000296440	ENST00000454817		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000296440	ENST00000328333		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-intron	ENST00000296440	ENST00000470076		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000358459	ENST00000454817		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000358459	ENST00000328333		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-intron	ENST00000358459	ENST00000470076		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000358536	ENST00000454817		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000358536	ENST00000328333		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-intron	ENST00000358536	ENST00000470076		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000448774	ENST00000454817		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000448774	ENST00000328333		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-intron	ENST00000448774	ENST00000470076		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000456774	ENST00000454817		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000456774	ENST00000328333		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-intron	ENST00000456774	ENST00000470076		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000465117	ENST00000454817		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-3CDS	ENST00000465117	ENST00000328333		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
intron-intron	ENST00000465117	ENST00000470076		TCGA	LD	OV	TCGA-25-2397-01A	PLXNB1	chr3	48454606	-	COL7A1	chr3	48625365	-
5CDS-intron	ENST00000358506	ENST00000540266		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-3UTR	ENST00000358506	ENST00000539019		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000358506	ENST00000422622		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000358506	ENST00000242729		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000358506	ENST00000535504		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000296122	ENST00000540266		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-3UTR	ENST00000296122	ENST00000539019		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000296122	ENST00000422622		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000296122	ENST00000242729		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000296122	ENST00000535504		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000395366	ENST00000540266		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-3UTR	ENST00000395366	ENST00000539019		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000395366	ENST00000422622		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000395366	ENST00000242729		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5CDS-intron	ENST00000395366	ENST00000535504		TCGA	LD	OV	TCGA-25-2397-01A	PPP1CB	chr2	29001905	+	SSPN	chr12	26332929	+
5UTR-3CDS	ENST00000405995	ENST00000231498		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
5UTR-3CDS	ENST00000405995	ENST00000381843		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
5UTR-3CDS	ENST00000405995	ENST00000513532		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
5UTR-5UTR	ENST00000405995	ENST00000502533		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000357304	ENST00000231498		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000357304	ENST00000381843		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000357304	ENST00000513532		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-5UTR	ENST00000357304	ENST00000502533		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000458550	ENST00000231498		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000458550	ENST00000381843		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000458550	ENST00000513532		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-5UTR	ENST00000458550	ENST00000502533		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000372249	ENST00000231498		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000372249	ENST00000381843		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000372249	ENST00000513532		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-5UTR	ENST00000372249	ENST00000502533		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000465931	ENST00000231498		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000465931	ENST00000381843		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-3CDS	ENST00000465931	ENST00000513532		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
intron-5UTR	ENST00000465931	ENST00000502533		TCGA	LD	OV	TCGA-25-2397-01A	PRRC2B	chr9	134269650	+	NUP155	chr5	37293087	-
3UTR-3CDS	ENST00000526231	ENST00000373023		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
3UTR-3CDS	ENST00000526231	ENST00000373026		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
3UTR-3CDS	ENST00000526231	ENST00000373024		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
3UTR-intron	ENST00000526231	ENST00000373021		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
3UTR-intron	ENST00000526231	ENST00000373027		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
3UTR-intron	ENST00000526231	ENST00000458109		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
3UTR-intron	ENST00000526231	ENST00000467066		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
Frame-shit	ENST00000308860	ENST00000373023		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
In-frame	ENST00000308860	ENST00000373026		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
Frame-shit	ENST00000308860	ENST00000373024		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000308860	ENST00000373021		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000308860	ENST00000373027		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000308860	ENST00000458109		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000308860	ENST00000467066		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
Frame-shit	ENST00000532190	ENST00000373023		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
In-frame	ENST00000532190	ENST00000373026		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
Frame-shit	ENST00000532190	ENST00000373024		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000532190	ENST00000373021		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000532190	ENST00000373027		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000532190	ENST00000458109		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
5CDS-intron	ENST00000532190	ENST00000467066		TCGA	LD	OV	TCGA-25-2398-01A	ADCK5	chr8	145603179	+	INPP5B	chr1	38328102	-
In-frame	ENST00000216181	ENST00000334018		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
In-frame	ENST00000216181	ENST00000404820		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
In-frame	ENST00000216181	ENST00000404755		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
5CDS-intron	ENST00000216181	ENST00000484039		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
intron-3CDS	ENST00000475726	ENST00000334018		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
intron-3CDS	ENST00000475726	ENST00000404820		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
intron-3CDS	ENST00000475726	ENST00000404755		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
intron-intron	ENST00000475726	ENST00000484039		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
In-frame	ENST00000401701	ENST00000334018		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
In-frame	ENST00000401701	ENST00000404820		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
In-frame	ENST00000401701	ENST00000404755		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
5CDS-intron	ENST00000401701	ENST00000484039		TCGA	LD	OV	TCGA-25-2398-01A	MYH9	chr22	36744949	-	EMID1	chr22	29610915	+
5CDS-intron	ENST00000275300	ENST00000408388		TCGA	LD	OV	TCGA-25-2398-01A	SLC22A3	chr6	160769880	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000392145	ENST00000408388		TCGA	LD	OV	TCGA-25-2398-01A	SLC22A3	chr6	160769880	+	PVT1	chr8	129108764	+
5CDS-5UTR	ENST00000263280	ENST00000601417		TCGA	LD	OV	TCGA-25-2398-01A	STRN4	chr19	47242042	-	ERVV-2	chr19	53552120	+
5CDS-5UTR	ENST00000391910	ENST00000601417		TCGA	LD	OV	TCGA-25-2398-01A	STRN4	chr19	47242042	-	ERVV-2	chr19	53552120	+
5CDS-5UTR	ENST00000539396	ENST00000601417		TCGA	LD	OV	TCGA-25-2398-01A	STRN4	chr19	47242042	-	ERVV-2	chr19	53552120	+
intron-5UTR	ENST00000594357	ENST00000601417		TCGA	LD	OV	TCGA-25-2398-01A	STRN4	chr19	47242042	-	ERVV-2	chr19	53552120	+
5UTR-3CDS	ENST00000586458	ENST00000250340		TCGA	LD	OV	TCGA-25-2398-01A	ZNF529	chr19	37080517	-	CLEC11A	chr19	51227162	+
5UTR-3CDS	ENST00000586458	ENST00000599973		TCGA	LD	OV	TCGA-25-2398-01A	ZNF529	chr19	37080517	-	CLEC11A	chr19	51227162	+
intron-3CDS	ENST00000334116	ENST00000250340		TCGA	LD	OV	TCGA-25-2398-01A	ZNF529	chr19	37080517	-	CLEC11A	chr19	51227162	+
intron-3CDS	ENST00000334116	ENST00000599973		TCGA	LD	OV	TCGA-25-2398-01A	ZNF529	chr19	37080517	-	CLEC11A	chr19	51227162	+
intron-3CDS	ENST00000591340	ENST00000250340		TCGA	LD	OV	TCGA-25-2398-01A	ZNF529	chr19	37080517	-	CLEC11A	chr19	51227162	+
intron-3CDS	ENST00000591340	ENST00000599973		TCGA	LD	OV	TCGA-25-2398-01A	ZNF529	chr19	37080517	-	CLEC11A	chr19	51227162	+
5UTR-3CDS	ENST00000319670	ENST00000341500		TCGA	LD	OV	TCGA-25-2399-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
5UTR-3CDS	ENST00000319670	ENST00000302850		TCGA	LD	OV	TCGA-25-2399-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000341500		TCGA	LD	OV	TCGA-25-2399-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000302850		TCGA	LD	OV	TCGA-25-2399-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
5CDS-5UTR	ENST00000585892	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000585892	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000585892	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000585892	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000585892	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000585892	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000585892	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000314646	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000314646	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000314646	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000314646	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000314646	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000314646	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000314646	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000359692	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000359692	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000359692	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000359692	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000359692	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000359692	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000359692	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000389253	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000389253	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000389253	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000389253	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000389253	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000389253	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000389253	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000355667	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000355667	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000355667	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000355667	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000355667	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000355667	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000355667	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000408974	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000408974	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000408974	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000408974	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-5UTR	ENST00000408974	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000408974	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
5CDS-intron	ENST00000408974	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-5UTR	ENST00000591819	ENST00000591462		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-5UTR	ENST00000591819	ENST00000252455		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-5UTR	ENST00000591819	ENST00000412601		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-5UTR	ENST00000591819	ENST00000592741		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-5UTR	ENST00000591819	ENST00000587327		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-intron	ENST00000591819	ENST00000589838		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-intron	ENST00000591819	ENST00000591510		TCGA	LD	OV	TCGA-25-2399-01A	DNM2	chr19	10829079	+	PRKCSH	chr19	11546862	+
intron-3CDS	ENST00000502675	ENST00000252891		TCGA	LD	OV	TCGA-25-2399-01A	ZNF826P	chr19	20519759	-	NUMBL	chr19	41183326	-
intron-3CDS	ENST00000502675	ENST00000598779		TCGA	LD	OV	TCGA-25-2399-01A	ZNF826P	chr19	20519759	-	NUMBL	chr19	41183326	-
intron-3CDS	ENST00000502675	ENST00000540131		TCGA	LD	OV	TCGA-25-2399-01A	ZNF826P	chr19	20519759	-	NUMBL	chr19	41183326	-
intron-intron	ENST00000502675	ENST00000599594		TCGA	LD	OV	TCGA-25-2399-01A	ZNF826P	chr19	20519759	-	NUMBL	chr19	41183326	-
5UTR-3CDS	ENST00000514738	ENST00000274254		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-3CDS	ENST00000514738	ENST00000274255		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-3CDS	ENST00000514738	ENST00000508514		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-5UTR	ENST00000514738	ENST00000546211		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-3CDS	ENST00000265071	ENST00000274254		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-3CDS	ENST00000265071	ENST00000274255		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-3CDS	ENST00000265071	ENST00000508514		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5UTR-5UTR	ENST00000265071	ENST00000546211		TCGA	LD	OV	TCGA-25-2400-01A	CDH6	chr5	31193993	+	SKP2	chr5	36152873	+
5CDS-intron	ENST00000393784	ENST00000523189		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
5CDS-intron	ENST00000393784	ENST00000521759		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
intron-intron	ENST00000519860	ENST00000523189		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
intron-intron	ENST00000519860	ENST00000521759		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
intron-intron	ENST00000523291	ENST00000523189		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
intron-intron	ENST00000523291	ENST00000521759		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
intron-intron	ENST00000326654	ENST00000523189		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
intron-intron	ENST00000326654	ENST00000521759		TCGA	LD	OV	TCGA-25-2400-01A	ERGIC1	chr5	172351112	+	RANBP17	chr5	170588411	+
5CDS-3UTR	ENST00000378641	ENST00000451762		TCGA	LD	OV	TCGA-25-2400-01A	PLCB1	chr20	8131018	+	WDFY3-AS2	chr4	85925383	+
5CDS-3UTR	ENST00000338037	ENST00000451762		TCGA	LD	OV	TCGA-25-2400-01A	PLCB1	chr20	8131018	+	WDFY3-AS2	chr4	85925383	+
5CDS-3UTR	ENST00000378637	ENST00000451762		TCGA	LD	OV	TCGA-25-2400-01A	PLCB1	chr20	8131018	+	WDFY3-AS2	chr4	85925383	+
intron-3UTR	ENST00000494924	ENST00000451762		TCGA	LD	OV	TCGA-25-2400-01A	PLCB1	chr20	8131018	+	WDFY3-AS2	chr4	85925383	+
intron-intron	ENST00000508736	ENST00000512603		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
intron-5UTR	ENST00000508736	ENST00000514377		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
5CDS-intron	ENST00000548825	ENST00000512603		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
5CDS-5UTR	ENST00000548825	ENST00000514377		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
5CDS-intron	ENST00000261897	ENST00000512603		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
5CDS-5UTR	ENST00000261897	ENST00000514377		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
5CDS-intron	ENST00000380281	ENST00000512603		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
5CDS-5UTR	ENST00000380281	ENST00000514377		TCGA	LD	OV	TCGA-25-2400-01A	PRPF40B	chr12	50026663	+	EGFLAM-AS2	chr5	38401323	-
intron-3CDS	ENST00000456518	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000456518	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000456518	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000456518	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000456518	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000397174	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397174	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397174	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397174	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397174	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000402904	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000402904	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000402904	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000402904	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000402904	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000361191	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361191	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361191	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361191	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361191	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000397171	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397171	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397171	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397171	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000397171	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000361705	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361705	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361705	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361705	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000361705	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000326197	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000326197	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000326197	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000326197	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000326197	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000372595	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000372595	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000372595	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000372595	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000372595	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-3CDS	ENST00000337495	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000337495	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000337495	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000337495	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000337495	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-3CDS	ENST00000372596	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372596	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372596	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372596	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372596	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-3CDS	ENST00000372597	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372597	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372597	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372597	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
5UTR-5UTR	ENST00000372597	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000472037	ENST00000373166		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000472037	ENST00000462715		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000472037	ENST00000373163		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000472037	ENST00000373162		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-5UTR	ENST00000472037	ENST00000373159		TCGA	LD	OV	TCGA-25-2400-01A	SCMH1	chr1	41707731	-	TRAPPC3	chr1	36605767	-
intron-3CDS	ENST00000367094	ENST00000360448		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-3CDS	ENST00000367094	ENST00000297239		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-3CDS	ENST00000367094	ENST00000367081		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-intron	ENST00000367094	ENST00000469735		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-3CDS	ENST00000367097	ENST00000360448		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-3CDS	ENST00000367097	ENST00000297239		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-3CDS	ENST00000367097	ENST00000367081		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
intron-intron	ENST00000367097	ENST00000469735		TCGA	LD	OV	TCGA-25-2400-01A	TULP4	chr6	158653335	+	SYTL3	chr6	159166512	+
In-frame	ENST00000398571	ENST00000327896		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
In-frame	ENST00000398571	ENST00000417561		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
In-frame	ENST00000398571	ENST00000490605		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000398571	ENST00000393526		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000398571	ENST00000470789		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
intron-3CDS	ENST00000472689	ENST00000327896		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
intron-3CDS	ENST00000472689	ENST00000417561		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
intron-3CDS	ENST00000472689	ENST00000490605		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
intron-intron	ENST00000472689	ENST00000393526		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
intron-intron	ENST00000472689	ENST00000470789		TCGA	LD	OV	TCGA-25-2400-01A	USP34	chr2	61697785	-	FAM178B	chr2	97613639	-
5CDS-intron	ENST00000242592	ENST00000469675		TCGA	LD	OV	TCGA-25-2401-01A	ACADS	chr12	121174938	+	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000242592	ENST00000257659		TCGA	LD	OV	TCGA-25-2401-01A	ACADS	chr12	121174938	+	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000242592	ENST00000222511		TCGA	LD	OV	TCGA-25-2401-01A	ACADS	chr12	121174938	+	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000411593	ENST00000469675		TCGA	LD	OV	TCGA-25-2401-01A	ACADS	chr12	121174938	+	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000411593	ENST00000257659		TCGA	LD	OV	TCGA-25-2401-01A	ACADS	chr12	121174938	+	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000411593	ENST00000222511		TCGA	LD	OV	TCGA-25-2401-01A	ACADS	chr12	121174938	+	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000504487	ENST00000277198		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000504487	ENST00000297979		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000504487	ENST00000375315		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000504487	ENST00000395357		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000504487	ENST00000425634		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000504487	ENST00000433691		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000504487	ENST00000473778		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000277198		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000297979		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000375315		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000395357		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000425634		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000433691		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000428116	ENST00000473778		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000277198		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000297979		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000375315		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000395357		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000425634		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000433691		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000389609	ENST00000473778		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000277198		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000297979		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000375315		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000395357		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000425634		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000433691		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000502801	ENST00000473778		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000277198		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000297979		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000375315		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000395357		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000425634		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000433691		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
intron-intron	ENST00000508236	ENST00000473778		TCGA	LD	OV	TCGA-25-2401-01A	CCDC149	chr4	24878158	-	C9orf3	chr9	97822976	+
Frame-shit	ENST00000425967	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000425967	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000425967	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000397091	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000397091	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000397091	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000447712	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000447712	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000447712	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000341462	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000341462	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000341462	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000532791	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000532791	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000532791	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000397113	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000397113	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000397113	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000356207	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000356207	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000356207	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5UTR-3CDS	ENST00000335922	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5UTR-3CDS	ENST00000335922	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5UTR-intron	ENST00000335922	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000326324	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000326324	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000326324	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
In-frame	ENST00000397103	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
In-frame	ENST00000397103	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000397103	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000397108	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
Frame-shit	ENST00000397108	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000397108	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000496629	ENST00000331018		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000496629	ENST00000266254		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
intron-intron	ENST00000496629	ENST00000445824		TCGA	LD	OV	TCGA-25-2401-01A	FGFR1	chr8	38314874	-	TTLL1	chr22	43435911	-
5CDS-5UTR	ENST00000559488	ENST00000572316		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000559488	ENST00000354968		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000559488	ENST00000393450		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000571680	ENST00000572316		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000571680	ENST00000354968		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000571680	ENST00000393450		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000435993	ENST00000572316		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000435993	ENST00000354968		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000435993	ENST00000393450		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000560629	ENST00000572316		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000560629	ENST00000354968		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000560629	ENST00000393450		TCGA	LD	OV	TCGA-25-2401-01A	ITGB3	chr17	45331306	+	MYL4	chr17	45286755	+
In-frame	ENST00000398571	ENST00000367328		TCGA	LD	OV	TCGA-25-2401-01A	USP34	chr2	61647881	-	PLEKHG1	chr6	151107526	+
In-frame	ENST00000398571	ENST00000358517		TCGA	LD	OV	TCGA-25-2401-01A	USP34	chr2	61647881	-	PLEKHG1	chr6	151107526	+
intron-3CDS	ENST00000472689	ENST00000367328		TCGA	LD	OV	TCGA-25-2401-01A	USP34	chr2	61647881	-	PLEKHG1	chr6	151107526	+
intron-3CDS	ENST00000472689	ENST00000358517		TCGA	LD	OV	TCGA-25-2401-01A	USP34	chr2	61647881	-	PLEKHG1	chr6	151107526	+
5CDS-5UTR	ENST00000261192	ENST00000392038		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000261192	ENST00000424901		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000261192	ENST00000311278		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000261192	ENST00000579047		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000261192	ENST00000581582		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-5UTR	ENST00000538118	ENST00000392038		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000538118	ENST00000424901		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000538118	ENST00000311278		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000538118	ENST00000579047		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000538118	ENST00000581582		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-5UTR	ENST00000342945	ENST00000392038		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000342945	ENST00000424901		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000342945	ENST00000311278		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000342945	ENST00000579047		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000342945	ENST00000581582		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-5UTR	ENST00000539282	ENST00000392038		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539282	ENST00000424901		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539282	ENST00000311278		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539282	ENST00000579047		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539282	ENST00000581582		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-5UTR	ENST00000539780	ENST00000392038		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539780	ENST00000424901		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539780	ENST00000311278		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539780	ENST00000579047		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5CDS-intron	ENST00000539780	ENST00000581582		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5UTR-5UTR	ENST00000544418	ENST00000392038		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5UTR-intron	ENST00000544418	ENST00000424901		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5UTR-intron	ENST00000544418	ENST00000311278		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5UTR-intron	ENST00000544418	ENST00000579047		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5UTR-intron	ENST00000544418	ENST00000581582		TCGA	LD	OV	TCGA-25-2404-01A	BCAT1	chr12	25047209	-	AKT2	chr19	40771258	-
5UTR-3CDS	ENST00000578681	ENST00000538928		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000578681	ENST00000584529		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000578681	ENST00000290866		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000578681	ENST00000428043		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000578681	ENST00000490216		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000578681	ENST00000577647		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000578681	ENST00000290863		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000578681	ENST00000421982		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000578681	ENST00000413513		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3CDS	ENST00000583590	ENST00000538928		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000583590	ENST00000584529		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000583590	ENST00000290866		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000583590	ENST00000428043		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000583590	ENST00000490216		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000583590	ENST00000577647		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000583590	ENST00000290863		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000583590	ENST00000421982		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000583590	ENST00000413513		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3CDS	ENST00000359353	ENST00000538928		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000359353	ENST00000584529		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000359353	ENST00000290866		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000359353	ENST00000428043		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000359353	ENST00000490216		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000359353	ENST00000577647		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000359353	ENST00000290863		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000359353	ENST00000421982		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000359353	ENST00000413513		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3CDS	ENST00000389924	ENST00000538928		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000389924	ENST00000584529		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000389924	ENST00000290866		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-3UTR	ENST00000389924	ENST00000428043		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000389924	ENST00000490216		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000389924	ENST00000577647		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000389924	ENST00000290863		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000389924	ENST00000421982		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
5UTR-intron	ENST00000389924	ENST00000413513		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3CDS	ENST00000457800	ENST00000538928		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3UTR	ENST00000457800	ENST00000584529		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3UTR	ENST00000457800	ENST00000290866		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3UTR	ENST00000457800	ENST00000428043		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000457800	ENST00000490216		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000457800	ENST00000577647		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000457800	ENST00000290863		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000457800	ENST00000421982		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000457800	ENST00000413513		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3CDS	ENST00000582985	ENST00000538928		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3UTR	ENST00000582985	ENST00000584529		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3UTR	ENST00000582985	ENST00000290866		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-3UTR	ENST00000582985	ENST00000428043		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000582985	ENST00000490216		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000582985	ENST00000577647		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000582985	ENST00000290863		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000582985	ENST00000421982		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
intron-intron	ENST00000582985	ENST00000413513		TCGA	LD	OV	TCGA-25-2409-01A	DDX42	chr17	61851736	+	ACE	chr17	61557130	+
In-frame	ENST00000368533	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
5UTR-3CDS	ENST00000469717	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000330188	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000341485	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000341372	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000328159	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000271850	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
Frame-shit	ENST00000302206	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000368531	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000323144	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
In-frame	ENST00000368530	ENST00000367282		TCGA	LD	OV	TCGA-25-2409-01A	TPM3	chr1	154142876	-	GPR37L1	chr1	202096869	+
intron-5UTR	ENST00000488813	ENST00000427076		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
intron-intron	ENST00000488813	ENST00000326391		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
intron-5UTR	ENST00000395879	ENST00000427076		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
intron-intron	ENST00000395879	ENST00000326391		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5UTR-5UTR	ENST00000395880	ENST00000427076		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5UTR-intron	ENST00000395880	ENST00000326391		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5UTR-5UTR	ENST00000310564	ENST00000427076		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5UTR-intron	ENST00000310564	ENST00000326391		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5UTR-5UTR	ENST00000223336	ENST00000427076		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5UTR-intron	ENST00000223336	ENST00000326391		TCGA	LD	OV	TCGA-29-1688-01A	COA1	chr7	43769028	-	POLR2J4	chr7	44012922	-
5CDS-5UTR	ENST00000412331	ENST00000249014		TCGA	LD	OV	TCGA-29-1688-01A	EIF3L	chr22	38274178	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000381683	ENST00000249014		TCGA	LD	OV	TCGA-29-1688-01A	EIF3L	chr22	38274178	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000406934	ENST00000249014		TCGA	LD	OV	TCGA-29-1688-01A	EIF3L	chr22	38274178	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000476955	ENST00000249014		TCGA	LD	OV	TCGA-29-1688-01A	EIF3L	chr22	38274178	+	CDC42EP1	chr22	37962079	+
In-frame	ENST00000216294	ENST00000332981		TCGA	LD	OV	TCGA-29-1688-01A	SNAPC1	chr14	62245628	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000216294	ENST00000555082		TCGA	LD	OV	TCGA-29-1688-01A	SNAPC1	chr14	62245628	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000216294	ENST00000556245		TCGA	LD	OV	TCGA-29-1688-01A	SNAPC1	chr14	62245628	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000358602	ENST00000373449		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
Frame-shit	ENST00000358602	ENST00000548033		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000358602	ENST00000491241		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000358602	ENST00000467905		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000358602	ENST00000480134		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000358602	ENST00000354858		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000358602	ENST00000487289		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-3CDS	ENST00000509867	ENST00000373449		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-3CDS	ENST00000509867	ENST00000548033		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000509867	ENST00000491241		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000509867	ENST00000467905		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000509867	ENST00000480134		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000509867	ENST00000354858		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000509867	ENST00000487289		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
Frame-shit	ENST00000330838	ENST00000373449		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
Frame-shit	ENST00000330838	ENST00000548033		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000330838	ENST00000491241		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000330838	ENST00000467905		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000330838	ENST00000480134		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000330838	ENST00000354858		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
5CDS-intron	ENST00000330838	ENST00000487289		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-3CDS	ENST00000514252	ENST00000373449		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-3CDS	ENST00000514252	ENST00000548033		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000514252	ENST00000491241		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000514252	ENST00000467905		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000514252	ENST00000480134		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000514252	ENST00000354858		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-intron	ENST00000514252	ENST00000487289		TCGA	LD	OV	TCGA-29-1691-01A	ANKRD17	chr4	74123991	-	AK2	chr1	33480193	-
intron-3CDS	ENST00000375789	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000375789	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000375789	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000375789	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000375789	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000375789	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000375789	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000375789	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000480913	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000480913	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375787	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375787	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-3CDS	ENST00000375792	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
5UTR-intron	ENST00000375792	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000443533	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000443533	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000493926	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000493926	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413532	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413532	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000411456	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000411456	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000451411	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000451411	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000488668	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000488668	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000430482	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000430482	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000437889	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000437889	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000414455	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000414455	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000490871	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000490871	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000444699	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000444699	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000454138	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000454138	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400062	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400062	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000466207	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000466207	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000383409	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000383409	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000400063	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000400063	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000413655	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000413655	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000494351	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000494351	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000424790	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000424790	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000447101	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000447101	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000427126	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000427126	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000473167	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000473167	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000426149	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000426149	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000375742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000375755		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000375750		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000534153		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000375703		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000375740		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-3CDS	ENST00000434464	ENST00000431848		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000482280		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000395853		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000430216		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000486924		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000416549		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000456839		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000478326		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000458144		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000419269		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000414412		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000549746		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000427735		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000457742		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000497157		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000435700		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000436559		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000439816		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000460275		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000549604		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000441395		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000441401		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000578225		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000473342		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000448617		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000436192		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000436004		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000490125		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000457917		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000480915		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000443040		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
intron-intron	ENST00000434464	ENST00000448169		TCGA	LD	OV	TCGA-29-1691-01A	DDAH2	chr6	31697828	-	MSH5	chr6	31725942	+
Frame-shit	ENST00000379802	ENST00000324331		TCGA	LD	OV	TCGA-29-1691-01A	DSP	chr6	7542318	+	FARS2	chr6	5545413	+
Frame-shit	ENST00000379802	ENST00000274680		TCGA	LD	OV	TCGA-29-1691-01A	DSP	chr6	7542318	+	FARS2	chr6	5545413	+
Frame-shit	ENST00000418664	ENST00000324331		TCGA	LD	OV	TCGA-29-1691-01A	DSP	chr6	7542318	+	FARS2	chr6	5545413	+
Frame-shit	ENST00000418664	ENST00000274680		TCGA	LD	OV	TCGA-29-1691-01A	DSP	chr6	7542318	+	FARS2	chr6	5545413	+
Frame-shit	ENST00000287996	ENST00000375643		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-3UTR	ENST00000287996	ENST00000375629		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-3UTR	ENST00000287996	ENST00000443024		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-3UTR	ENST00000287996	ENST00000447699		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-intron	ENST00000287996	ENST00000375627		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-intron	ENST00000287996	ENST00000474340		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
intron-3CDS	ENST00000486841	ENST00000375643		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
intron-3UTR	ENST00000486841	ENST00000375629		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
intron-3UTR	ENST00000486841	ENST00000443024		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
intron-3UTR	ENST00000486841	ENST00000447699		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
intron-intron	ENST00000486841	ENST00000375627		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
intron-intron	ENST00000486841	ENST00000474340		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
Frame-shit	ENST00000375522	ENST00000375643		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-3UTR	ENST00000375522	ENST00000375629		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-3UTR	ENST00000375522	ENST00000443024		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-3UTR	ENST00000375522	ENST00000447699		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-intron	ENST00000375522	ENST00000375627		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
5CDS-intron	ENST00000375522	ENST00000474340		TCGA	LD	OV	TCGA-29-1691-01A	IPPK	chr9	95396668	-	IARS	chr9	94973171	-
Frame-shit	ENST00000430223	ENST00000395785		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
5CDS-intron	ENST00000430223	ENST00000529502		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
5CDS-intron	ENST00000430223	ENST00000337573		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
5CDS-intron	ENST00000430223	ENST00000531677		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
Frame-shit	ENST00000341166	ENST00000395785		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
5CDS-intron	ENST00000341166	ENST00000529502		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
5CDS-intron	ENST00000341166	ENST00000337573		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
5CDS-intron	ENST00000341166	ENST00000531677		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
intron-3CDS	ENST00000520545	ENST00000395785		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
intron-intron	ENST00000520545	ENST00000529502		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
intron-intron	ENST00000520545	ENST00000337573		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
intron-intron	ENST00000520545	ENST00000531677		TCGA	LD	OV	TCGA-29-1691-01A	NIPAL2	chr8	99306231	-	EBAG9	chr8	110576668	+
Frame-shit	ENST00000261396	ENST00000327680		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
In-frame	ENST00000261396	ENST00000378128		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
Frame-shit	ENST00000261396	ENST00000541394		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
In-frame	ENST00000261396	ENST00000543784		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000261396	ENST00000537257		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000261396	ENST00000358383		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000261396	ENST00000392911		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-3UTR	ENST00000261396	ENST00000535811		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
Frame-shit	ENST00000537506	ENST00000327680		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
In-frame	ENST00000537506	ENST00000378128		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
Frame-shit	ENST00000537506	ENST00000541394		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
In-frame	ENST00000537506	ENST00000543784		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000537506	ENST00000537257		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000537506	ENST00000358383		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000537506	ENST00000392911		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
5CDS-3UTR	ENST00000537506	ENST00000535811		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000366678	ENST00000327680		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000366678	ENST00000378128		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000366678	ENST00000541394		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000366678	ENST00000543784		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-intron	ENST00000366678	ENST00000537257		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-intron	ENST00000366678	ENST00000358383		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-intron	ENST00000366678	ENST00000392911		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3UTR	ENST00000366678	ENST00000535811		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000485119	ENST00000327680		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000485119	ENST00000378128		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000485119	ENST00000541394		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3CDS	ENST00000485119	ENST00000543784		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-intron	ENST00000485119	ENST00000537257		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-intron	ENST00000485119	ENST00000358383		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-intron	ENST00000485119	ENST00000392911		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
intron-3UTR	ENST00000485119	ENST00000535811		TCGA	LD	OV	TCGA-29-1691-01A	NUP133	chr1	229633883	-	PARPBP	chr12	102589729	+
In-frame	ENST00000315872	ENST00000560281		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
In-frame	ENST00000315872	ENST00000407092		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
In-frame	ENST00000315872	ENST00000272369		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
In-frame	ENST00000315872	ENST00000488550		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
In-frame	ENST00000315872	ENST00000398506		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
In-frame	ENST00000315872	ENST00000444274		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
In-frame	ENST00000315872	ENST00000495021		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
5CDS-3UTR	ENST00000315872	ENST00000409517		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000560281		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000407092		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000272369		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000488550		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000398506		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000444274		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000462366	ENST00000495021		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3UTR	ENST00000462366	ENST00000409517		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000560281		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000407092		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000272369		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000488550		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000398506		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000444274		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3CDS	ENST00000401753	ENST00000495021		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
intron-3UTR	ENST00000401753	ENST00000409517		TCGA	LD	OV	TCGA-29-1691-01A	ROCK2	chr2	11484122	-	MEIS1	chr2	66775075	+
5CDS-5UTR	ENST00000367157	ENST00000476884		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
5CDS-5UTR	ENST00000367157	ENST00000367153		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
5CDS-5UTR	ENST00000367157	ENST00000367154		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
5CDS-5UTR	ENST00000367157	ENST00000391936		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
5CDS-5UTR	ENST00000367157	ENST00000367149		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
5CDS-5UTR	ENST00000367157	ENST00000367151		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
5CDS-5UTR	ENST00000367157	ENST00000367152		TCGA	LD	OV	TCGA-29-1693-01A	NUAK2	chr1	205280833	-	LEMD1	chr1	205350984	-
intron-3CDS	ENST00000340477	ENST00000292894		TCGA	LD	OV	TCGA-29-1693-01A	SYNE4	chr19	36497425	-	THAP8	chr19	36530466	-
intron-5UTR	ENST00000340477	ENST00000538849		TCGA	LD	OV	TCGA-29-1693-01A	SYNE4	chr19	36497425	-	THAP8	chr19	36530466	-
intron-intron	ENST00000340477	ENST00000524106		TCGA	LD	OV	TCGA-29-1693-01A	SYNE4	chr19	36497425	-	THAP8	chr19	36530466	-
intron-3CDS	ENST00000324444	ENST00000292894		TCGA	LD	OV	TCGA-29-1693-01A	SYNE4	chr19	36497425	-	THAP8	chr19	36530466	-
intron-5UTR	ENST00000324444	ENST00000538849		TCGA	LD	OV	TCGA-29-1693-01A	SYNE4	chr19	36497425	-	THAP8	chr19	36530466	-
intron-intron	ENST00000324444	ENST00000524106		TCGA	LD	OV	TCGA-29-1693-01A	SYNE4	chr19	36497425	-	THAP8	chr19	36530466	-
5UTR-3CDS	ENST00000353801	ENST00000542245		TCGA	LD	OV	TCGA-29-1694-01A	HSP90AB1	chr6	44214932	+	CAPN11	chr6	44134495	+
5UTR-3CDS	ENST00000353801	ENST00000398776		TCGA	LD	OV	TCGA-29-1694-01A	HSP90AB1	chr6	44214932	+	CAPN11	chr6	44134495	+
5UTR-3CDS	ENST00000371646	ENST00000542245		TCGA	LD	OV	TCGA-29-1694-01A	HSP90AB1	chr6	44214932	+	CAPN11	chr6	44134495	+
5UTR-3CDS	ENST00000371646	ENST00000398776		TCGA	LD	OV	TCGA-29-1694-01A	HSP90AB1	chr6	44214932	+	CAPN11	chr6	44134495	+
intron-3CDS	ENST00000371554	ENST00000542245		TCGA	LD	OV	TCGA-29-1694-01A	HSP90AB1	chr6	44214932	+	CAPN11	chr6	44134495	+
intron-3CDS	ENST00000371554	ENST00000398776		TCGA	LD	OV	TCGA-29-1694-01A	HSP90AB1	chr6	44214932	+	CAPN11	chr6	44134495	+
5CDS-5UTR	ENST00000230419	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000230419	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000230419	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000349241	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000349241	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000349241	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000345201	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000345201	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000345201	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000352931	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000352931	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000352931	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
intron-5UTR	ENST00000481273	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
intron-5UTR	ENST00000481273	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
intron-5UTR	ENST00000481273	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000476760	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000476760	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000476760	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000471863	ENST00000326974		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000471863	ENST00000244670		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
5CDS-5UTR	ENST00000471863	ENST00000332245		TCGA	LD	OV	TCGA-29-1694-01A	PTK7	chr6	43044305	+	KLHDC3	chr6	42984872	+
Frame-shit	ENST00000495313	ENST00000475805		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000495313	ENST00000341179		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000495313	ENST00000372923		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000495313	ENST00000393594		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000495313	ENST00000486160		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
5CDS-intron	ENST00000495313	ENST00000493925		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000320188	ENST00000475805		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000320188	ENST00000341179		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000320188	ENST00000372923		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000320188	ENST00000393594		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000320188	ENST00000486160		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
5CDS-intron	ENST00000320188	ENST00000493925		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000608796	ENST00000475805		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000608796	ENST00000341179		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000608796	ENST00000372923		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000608796	ENST00000393594		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000608796	ENST00000486160		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
5CDS-intron	ENST00000608796	ENST00000493925		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000419867	ENST00000475805		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000419867	ENST00000341179		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000419867	ENST00000372923		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000419867	ENST00000393594		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000419867	ENST00000486160		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
5CDS-intron	ENST00000419867	ENST00000493925		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000418976	ENST00000475805		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000418976	ENST00000341179		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000418976	ENST00000372923		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000418976	ENST00000393594		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
Frame-shit	ENST00000418976	ENST00000486160		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
5CDS-intron	ENST00000418976	ENST00000493925		TCGA	LD	OV	TCGA-29-1694-01A	SWI5	chr9	131048312	+	DNM1	chr9	130980510	+
intron-intron	ENST00000262376	ENST00000301740		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-3UTR	ENST00000262376	ENST00000574593		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-intron	ENST00000545171	ENST00000301740		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-3UTR	ENST00000545171	ENST00000574593		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-intron	ENST00000590769	ENST00000301740		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-3UTR	ENST00000590769	ENST00000574593		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-intron	ENST00000396658	ENST00000301740		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-3UTR	ENST00000396658	ENST00000574593		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-intron	ENST00000585857	ENST00000301740		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
intron-3UTR	ENST00000585857	ENST00000574593		TCGA	LD	OV	TCGA-29-1694-01A	UBN1	chr16	4897340	+	SRRM2	chr16	2819933	+
3UTR-intron	ENST00000344188	ENST00000369812		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000344188	ENST00000256593		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000344188	ENST00000369813		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000344188	ENST00000492718		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000329608	ENST00000369812		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000329608	ENST00000256593		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000329608	ENST00000369813		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000329608	ENST00000492718		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000369802	ENST00000369812		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000369802	ENST00000256593		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000369802	ENST00000369813		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000369802	ENST00000492718		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000420111	ENST00000369812		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000420111	ENST00000256593		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000420111	ENST00000369813		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
3UTR-intron	ENST00000420111	ENST00000492718		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
5CDS-intron	ENST00000369801	ENST00000369812		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
5CDS-intron	ENST00000369801	ENST00000256593		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
5CDS-intron	ENST00000369801	ENST00000369813		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
5CDS-intron	ENST00000369801	ENST00000492718		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
intron-intron	ENST00000526001	ENST00000369812		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
intron-intron	ENST00000526001	ENST00000256593		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
intron-intron	ENST00000526001	ENST00000369813		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
intron-intron	ENST00000526001	ENST00000492718		TCGA	LD	OV	TCGA-29-1695-01A	CSF1	chr1	110467824	+	GSTM5	chr1	110317694	+
In-frame	ENST00000273261	ENST00000497343		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
In-frame	ENST00000273261	ENST00000498165		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5CDS-5UTR	ENST00000273261	ENST00000464260		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5CDS-5UTR	ENST00000273261	ENST00000295839		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5CDS-3UTR	ENST00000273261	ENST00000480117		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
In-frame	ENST00000383703	ENST00000497343		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
In-frame	ENST00000383703	ENST00000498165		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5CDS-5UTR	ENST00000383703	ENST00000464260		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5CDS-5UTR	ENST00000383703	ENST00000295839		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5CDS-3UTR	ENST00000383703	ENST00000480117		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
intron-3CDS	ENST00000496559	ENST00000497343		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
intron-3CDS	ENST00000496559	ENST00000498165		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
intron-5UTR	ENST00000496559	ENST00000464260		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
intron-5UTR	ENST00000496559	ENST00000295839		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
intron-3UTR	ENST00000496559	ENST00000480117		TCGA	LD	OV	TCGA-29-1695-01A	LRIG1	chr3	66550614	-	PPM1L	chr3	160679524	+
5UTR-3CDS	ENST00000561924	ENST00000540947		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-3CDS	ENST00000561924	ENST00000338718		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-3CDS	ENST00000561924	ENST00000541479		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-3CDS	ENST00000561924	ENST00000398354		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-3CDS	ENST00000561924	ENST00000326686		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-intron	ENST00000561924	ENST00000540579		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-intron	ENST00000561924	ENST00000535696		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5UTR-intron	ENST00000561924	ENST00000397205		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000290858	ENST00000540947		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000290858	ENST00000338718		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000290858	ENST00000541479		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000290858	ENST00000398354		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000290858	ENST00000326686		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5CDS-intron	ENST00000290858	ENST00000540579		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5CDS-intron	ENST00000290858	ENST00000535696		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5CDS-intron	ENST00000290858	ENST00000397205		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000412916	ENST00000540947		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000412916	ENST00000338718		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000412916	ENST00000541479		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000412916	ENST00000398354		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
Frame-shit	ENST00000412916	ENST00000326686		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5CDS-intron	ENST00000412916	ENST00000540579		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5CDS-intron	ENST00000412916	ENST00000535696		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
5CDS-intron	ENST00000412916	ENST00000397205		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-3CDS	ENST00000568858	ENST00000540947		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-3CDS	ENST00000568858	ENST00000338718		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-3CDS	ENST00000568858	ENST00000541479		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-3CDS	ENST00000568858	ENST00000398354		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-3CDS	ENST00000568858	ENST00000326686		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-intron	ENST00000568858	ENST00000540579		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-intron	ENST00000568858	ENST00000535696		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
intron-intron	ENST00000568858	ENST00000397205		TCGA	LD	OV	TCGA-29-1697-01A	CBFB	chr16	67070658	+	CES4A	chr16	67029531	+
In-frame	ENST00000393408	ENST00000336915		TCGA	LD	OV	TCGA-29-1697-01A	CBX1	chr17	46154227	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000393408	ENST00000584924		TCGA	LD	OV	TCGA-29-1697-01A	CBX1	chr17	46154227	-	SKAP1	chr17	46214699	-
In-frame	ENST00000225603	ENST00000336915		TCGA	LD	OV	TCGA-29-1697-01A	CBX1	chr17	46154227	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000225603	ENST00000584924		TCGA	LD	OV	TCGA-29-1697-01A	CBX1	chr17	46154227	-	SKAP1	chr17	46214699	-
In-frame	ENST00000495350	ENST00000336915		TCGA	LD	OV	TCGA-29-1697-01A	CBX1	chr17	46154227	-	SKAP1	chr17	46214699	-
Frame-shit	ENST00000495350	ENST00000584924		TCGA	LD	OV	TCGA-29-1697-01A	CBX1	chr17	46154227	-	SKAP1	chr17	46214699	-
3UTR-intron	ENST00000534336	ENST00000528416		TCGA	LD	OV	TCGA-29-1697-01A	MALAT1	chr11	65271040	+	DPF2	chr11	65113113	+
3UTR-intron	ENST00000534336	ENST00000415073		TCGA	LD	OV	TCGA-29-1697-01A	MALAT1	chr11	65271040	+	DPF2	chr11	65113113	+
3UTR-intron	ENST00000534336	ENST00000252268		TCGA	LD	OV	TCGA-29-1697-01A	MALAT1	chr11	65271040	+	DPF2	chr11	65113113	+
3UTR-intron	ENST00000534336	ENST00000532264		TCGA	LD	OV	TCGA-29-1697-01A	MALAT1	chr11	65271040	+	DPF2	chr11	65113113	+
intron-intron	ENST00000267079	ENST00000548446		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000267079	ENST00000420353		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000267079	ENST00000415113		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000267079	ENST00000456903		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000267079	ENST00000548118		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000267079	ENST00000591397		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000267079	ENST00000328463		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000267079	ENST00000546661		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547488	ENST00000548446		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547488	ENST00000420353		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547488	ENST00000415113		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547488	ENST00000456903		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547488	ENST00000548118		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547488	ENST00000591397		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547488	ENST00000328463		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547488	ENST00000546661		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547035	ENST00000548446		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547035	ENST00000420353		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547035	ENST00000415113		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547035	ENST00000456903		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547035	ENST00000548118		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547035	ENST00000591397		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547035	ENST00000328463		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547035	ENST00000546661		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547151	ENST00000548446		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547151	ENST00000420353		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547151	ENST00000415113		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547151	ENST00000456903		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547151	ENST00000548118		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547151	ENST00000591397		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-3UTR	ENST00000547151	ENST00000328463		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
intron-intron	ENST00000547151	ENST00000546661		TCGA	LD	OV	TCGA-29-1697-01A	MAP3K12	chr12	53876885	-	ATF7	chr12	53907985	-
5CDS-5UTR	ENST00000264819	ENST00000293842		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000264819	ENST00000584164		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000264819	ENST00000582556		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000264819	ENST00000583011		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
5CDS-intron	ENST00000264819	ENST00000585176		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000264819	ENST00000578812		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
intron-5UTR	ENST00000592722	ENST00000293842		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
intron-5UTR	ENST00000592722	ENST00000584164		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
intron-5UTR	ENST00000592722	ENST00000582556		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
intron-5UTR	ENST00000592722	ENST00000583011		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
intron-intron	ENST00000592722	ENST00000585176		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
intron-5UTR	ENST00000592722	ENST00000578812		TCGA	LD	OV	TCGA-29-1697-01A	MIER2	chr19	325635	-	RPL26	chr17	8285633	-
5CDS-3UTR	ENST00000330714	ENST00000479810		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
5CDS-3UTR	ENST00000330714	ENST00000357985		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
5CDS-3UTR	ENST00000330714	ENST00000398647		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
5CDS-3UTR	ENST00000330714	ENST00000398652		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
5CDS-3UTR	ENST00000330714	ENST00000398646		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000543692	ENST00000479810		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000543692	ENST00000357985		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000543692	ENST00000398647		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000543692	ENST00000398652		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000543692	ENST00000398646		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000496774	ENST00000479810		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000496774	ENST00000357985		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000496774	ENST00000398647		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000496774	ENST00000398652		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
intron-3UTR	ENST00000496774	ENST00000398646		TCGA	LD	OV	TCGA-29-1697-01A	MX2	chr21	42752078	+	FAM3B	chr21	42716403	+
Frame-shit	ENST00000451562	ENST00000439616		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000443864		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000447398		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000449767		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000444676		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000222673		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000543843		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000451562	ENST00000459672		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
Frame-shit	ENST00000468812	ENST00000439616		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000443864		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000447398		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000449767		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000444676		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000222673		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000543843		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000468812	ENST00000459672		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
Frame-shit	ENST00000489459	ENST00000439616		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000443864		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000447398		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000449767		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000444676		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000222673		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000543843		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000489459	ENST00000459672		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
Frame-shit	ENST00000355968	ENST00000439616		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000443864		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000447398		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000449767		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000444676		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000222673		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000543843		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
5CDS-intron	ENST00000355968	ENST00000459672		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-3CDS	ENST00000480603	ENST00000439616		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000443864		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000447398		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000449767		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000444676		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000222673		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000543843		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
3UTR-intron	ENST00000480603	ENST00000459672		TCGA	LD	OV	TCGA-29-1697-01A	PPIA	chr7	44839473	+	OGDH	chr7	44733424	+
Frame-shit	ENST00000290524	ENST00000392723		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000361398		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000271715		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000368863		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000409503		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000531094		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000540984		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000290524	ENST00000491586		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
Frame-shit	ENST00000368870	ENST00000392723		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000361398		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000271715		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000368863		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000409503		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000531094		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000540984		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000368870	ENST00000491586		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
In-frame	ENST00000452671	ENST00000392723		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000361398		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000271715		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000368863		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000409503		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000531094		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000540984		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452671	ENST00000491586		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
In-frame	ENST00000452513	ENST00000392723		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000361398		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000271715		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000368863		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000409503		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000531094		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000540984		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
5CDS-5UTR	ENST00000452513	ENST00000491586		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-3CDS	ENST00000478564	ENST00000392723		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000361398		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000271715		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000368863		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000409503		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000531094		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000540984		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
intron-5UTR	ENST00000478564	ENST00000491586		TCGA	LD	OV	TCGA-29-1697-01A	RFX5	chr1	151316673	-	POGZ	chr1	151414681	-
Frame-shit	ENST00000378454	ENST00000230036		TCGA	LD	OV	TCGA-29-1698-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24429346	-
5CDS-intron	ENST00000378454	ENST00000474784		TCGA	LD	OV	TCGA-29-1698-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24429346	-
intron-3CDS	ENST00000378450	ENST00000230036		TCGA	LD	OV	TCGA-29-1698-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24429346	-
intron-intron	ENST00000378450	ENST00000474784		TCGA	LD	OV	TCGA-29-1698-01A	DCDC2	chr6	24301943	-	GPLD1	chr6	24429346	-
intron-3CDS	ENST00000525985	ENST00000262577		TCGA	LD	OV	TCGA-29-1698-01A	EPPK1	chr8	144940235	-	ZC3H3	chr8	144590069	-
intron-3CDS	ENST00000379441	ENST00000262030		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000379441	ENST00000552919		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-intron	ENST00000379441	ENST00000550162		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000179765	ENST00000262030		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000179765	ENST00000552919		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-intron	ENST00000179765	ENST00000550162		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000551812	ENST00000262030		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000551812	ENST00000552919		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-intron	ENST00000551812	ENST00000550162		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000549884	ENST00000262030		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000549884	ENST00000552919		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-intron	ENST00000549884	ENST00000550162		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000553222	ENST00000262030		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-3CDS	ENST00000553222	ENST00000552919		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
intron-intron	ENST00000553222	ENST00000550162		TCGA	LD	OV	TCGA-29-1701-01A	BAZ2A	chr12	57024560	-	ATP5B	chr12	57032207	-
Frame-shit	ENST00000343979	ENST00000316448		TCGA	LD	OV	TCGA-29-1701-01A	ZNF136	chr19	12274021	+	CALR	chr19	13049948	+
5UTR-3CDS	ENST00000398616	ENST00000316448		TCGA	LD	OV	TCGA-29-1701-01A	ZNF136	chr19	12274021	+	CALR	chr19	13049948	+
In-frame	ENST00000589390	ENST00000246554		TCGA	LD	OV	TCGA-29-1701-01A	ZNF850	chr19	37252545	-	COX6B1	chr19	36149496	+
Frame-shit	ENST00000589390	ENST00000592141		TCGA	LD	OV	TCGA-29-1701-01A	ZNF850	chr19	37252545	-	COX6B1	chr19	36149496	+
In-frame	ENST00000589390	ENST00000392201		TCGA	LD	OV	TCGA-29-1701-01A	ZNF850	chr19	37252545	-	COX6B1	chr19	36149496	+
In-frame	ENST00000591344	ENST00000246554		TCGA	LD	OV	TCGA-29-1701-01A	ZNF850	chr19	37252545	-	COX6B1	chr19	36149496	+
Frame-shit	ENST00000591344	ENST00000592141		TCGA	LD	OV	TCGA-29-1701-01A	ZNF850	chr19	37252545	-	COX6B1	chr19	36149496	+
In-frame	ENST00000591344	ENST00000392201		TCGA	LD	OV	TCGA-29-1701-01A	ZNF850	chr19	37252545	-	COX6B1	chr19	36149496	+
3UTR-3CDS	ENST00000558351	ENST00000327367		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
3UTR-intron	ENST00000558351	ENST00000559092		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
3UTR-intron	ENST00000558351	ENST00000540846		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
3UTR-intron	ENST00000558351	ENST00000439724		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
3UTR-intron	ENST00000558351	ENST00000537194		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
Frame-shit	ENST00000334660	ENST00000327367		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000334660	ENST00000559092		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000334660	ENST00000540846		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000334660	ENST00000439724		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000334660	ENST00000537194		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
Frame-shit	ENST00000560397	ENST00000327367		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000560397	ENST00000559092		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000560397	ENST00000540846		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000560397	ENST00000439724		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
5CDS-intron	ENST00000560397	ENST00000537194		TCGA	LD	OV	TCGA-29-1702-01A	CHP1	chr15	41555081	+	SMAD3	chr15	67482751	+
intron-5UTR	ENST00000543482	ENST00000450751		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-5UTR	ENST00000543482	ENST00000563800		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000398591		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000562019		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000423133		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000568128		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000564522		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000261723		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-5UTR	ENST00000543482	ENST00000568757		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000398592		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000543482	ENST00000563519		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000331706	ENST00000450751		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000331706	ENST00000563800		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000398591		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000562019		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000423133		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000568128		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000564522		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000261723		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000331706	ENST00000568757		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000398592		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000331706	ENST00000563519		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000451018	ENST00000450751		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000451018	ENST00000563800		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000398591		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000562019		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000423133		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000568128		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000564522		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000261723		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000451018	ENST00000568757		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000398592		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000451018	ENST00000563519		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000357742	ENST00000450751		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000357742	ENST00000563800		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000398591		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000562019		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000423133		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000568128		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000564522		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000261723		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000357742	ENST00000568757		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000398592		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000357742	ENST00000563519		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000557742	ENST00000450751		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000557742	ENST00000563800		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000398591		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000562019		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000423133		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000568128		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000564522		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000261723		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-5UTR	ENST00000557742	ENST00000568757		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000398592		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5CDS-intron	ENST00000557742	ENST00000563519		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-5UTR	ENST00000449432	ENST00000450751		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-5UTR	ENST00000449432	ENST00000563800		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000398591		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000562019		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000423133		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000568128		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000564522		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000261723		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-5UTR	ENST00000449432	ENST00000568757		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000398592		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
intron-intron	ENST00000449432	ENST00000563519		TCGA	LD	OV	TCGA-29-1702-01A	MCTP2	chr15	94913409	+	CPEB1	chr15	83296118	-
5UTR-5UTR	ENST00000397195	ENST00000305513		TCGA	LD	OV	TCGA-29-1702-01A	PAFAH1B1	chr17	2497300	+	SMYD4	chr17	1731300	-
3UTR-5UTR	ENST00000572915	ENST00000305513		TCGA	LD	OV	TCGA-29-1702-01A	PAFAH1B1	chr17	2497300	+	SMYD4	chr17	1731300	-
intron-5UTR	ENST00000451360	ENST00000305513		TCGA	LD	OV	TCGA-29-1702-01A	PAFAH1B1	chr17	2497300	+	SMYD4	chr17	1731300	-
In-frame	ENST00000354300	ENST00000456098		TCGA	LD	OV	TCGA-29-1702-01A	PPTC7	chr12	111020614	-	IGF1	chr12	102869577	-
In-frame	ENST00000354300	ENST00000337514		TCGA	LD	OV	TCGA-29-1702-01A	PPTC7	chr12	111020614	-	IGF1	chr12	102869577	-
5CDS-intron	ENST00000354300	ENST00000481539		TCGA	LD	OV	TCGA-29-1702-01A	PPTC7	chr12	111020614	-	IGF1	chr12	102869577	-
5CDS-intron	ENST00000354300	ENST00000392904		TCGA	LD	OV	TCGA-29-1702-01A	PPTC7	chr12	111020614	-	IGF1	chr12	102869577	-
5CDS-intron	ENST00000354300	ENST00000424202		TCGA	LD	OV	TCGA-29-1702-01A	PPTC7	chr12	111020614	-	IGF1	chr12	102869577	-
5CDS-intron	ENST00000354300	ENST00000307046		TCGA	LD	OV	TCGA-29-1702-01A	PPTC7	chr12	111020614	-	IGF1	chr12	102869577	-
In-frame	ENST00000540393	ENST00000338694		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000540393	ENST00000535086		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
In-frame	ENST00000254695	ENST00000338694		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000254695	ENST00000535086		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
In-frame	ENST00000366401	ENST00000338694		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000366401	ENST00000535086		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
In-frame	ENST00000542807	ENST00000338694		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
5CDS-5UTR	ENST00000542807	ENST00000535086		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
intron-3CDS	ENST00000574709	ENST00000338694		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
intron-5UTR	ENST00000574709	ENST00000535086		TCGA	LD	OV	TCGA-29-1702-01A	RAP1GAP2	chr17	2703844	+	TEKT1	chr17	6719281	-
5UTR-3CDS	ENST00000341259	ENST00000427718		TCGA	LD	OV	TCGA-29-1702-01A	SH2B3	chr12	111844081	+	FBXO21	chr12	117584082	-
5UTR-3CDS	ENST00000341259	ENST00000330622		TCGA	LD	OV	TCGA-29-1702-01A	SH2B3	chr12	111844081	+	FBXO21	chr12	117584082	-
5UTR-intron	ENST00000341259	ENST00000549689		TCGA	LD	OV	TCGA-29-1702-01A	SH2B3	chr12	111844081	+	FBXO21	chr12	117584082	-
intron-3CDS	ENST00000538307	ENST00000427718		TCGA	LD	OV	TCGA-29-1702-01A	SH2B3	chr12	111844081	+	FBXO21	chr12	117584082	-
intron-3CDS	ENST00000538307	ENST00000330622		TCGA	LD	OV	TCGA-29-1702-01A	SH2B3	chr12	111844081	+	FBXO21	chr12	117584082	-
intron-intron	ENST00000538307	ENST00000549689		TCGA	LD	OV	TCGA-29-1702-01A	SH2B3	chr12	111844081	+	FBXO21	chr12	117584082	-
In-frame	ENST00000522695	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5CDS-intron	ENST00000522695	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000524300	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-intron	ENST00000524300	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-3CDS	ENST00000523558	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-intron	ENST00000523558	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000521210	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-intron	ENST00000521210	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
Frame-shit	ENST00000355780	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5CDS-intron	ENST00000355780	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000519961	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-intron	ENST00000519961	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-3CDS	ENST00000521727	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-intron	ENST00000521727	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-3CDS	ENST00000521451	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-intron	ENST00000521451	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
Frame-shit	ENST00000522509	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5CDS-intron	ENST00000522509	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-3CDS	ENST00000517542	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
intron-intron	ENST00000517542	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
Frame-shit	ENST00000524104	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5CDS-intron	ENST00000524104	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000522962	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-intron	ENST00000522962	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000521419	ENST00000328827		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-intron	ENST00000521419	ENST00000547571		TCGA	LD	OV	TCGA-29-1702-01A	STAU2	chr8	74650519	-	PAWR	chr12	80014987	-
5UTR-3CDS	ENST00000267890	ENST00000256545		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
5UTR-intron	ENST00000267890	ENST00000532113		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
5UTR-3CDS	ENST00000567840	ENST00000256545		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
5UTR-intron	ENST00000567840	ENST00000532113		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
5UTR-3CDS	ENST00000567274	ENST00000256545		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
5UTR-intron	ENST00000567274	ENST00000532113		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
intron-3CDS	ENST00000567485	ENST00000256545		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
intron-intron	ENST00000567485	ENST00000532113		TCGA	LD	OV	TCGA-29-1702-01A	TTBK2	chr15	43212636	-	EMC7	chr15	34388215	-
Frame-shit	ENST00000437048	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000574029	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
5UTR-3CDS	ENST00000576149	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
In-frame	ENST00000446250	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000291074	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000571805	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000401468	ENST00000331238		TCGA	LD	OV	TCGA-29-1702-01A	VPS53	chr17	505035	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000359019	ENST00000538618		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000359019	ENST00000392979		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000359019	ENST00000299222		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000359019	ENST00000392977		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-intron	ENST00000359019	ENST00000550015		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-3UTR	ENST00000359019	ENST00000551148		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
Frame-shit	ENST00000334822	ENST00000538618		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000334822	ENST00000392979		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000334822	ENST00000299222		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000334822	ENST00000392977		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-intron	ENST00000334822	ENST00000550015		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-3UTR	ENST00000334822	ENST00000551148		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
Frame-shit	ENST00000426126	ENST00000538618		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000426126	ENST00000392979		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000426126	ENST00000299222		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-5UTR	ENST00000426126	ENST00000392977		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-intron	ENST00000426126	ENST00000550015		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5CDS-3UTR	ENST00000426126	ENST00000551148		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
intron-3CDS	ENST00000550789	ENST00000538618		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
intron-5UTR	ENST00000550789	ENST00000392979		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
intron-5UTR	ENST00000550789	ENST00000299222		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
intron-5UTR	ENST00000550789	ENST00000392977		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
intron-intron	ENST00000550789	ENST00000550015		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
intron-3UTR	ENST00000550789	ENST00000551148		TCGA	LD	OV	TCGA-29-1702-01A	ZDHHC17	chr12	77158109	+	ANO4	chr12	101295424	+
5UTR-3CDS	ENST00000355431	ENST00000354386		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000355431	ENST00000556134		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000355431	ENST00000423743		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000355431	ENST00000261244		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-intron	ENST00000355431	ENST00000538571		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000348476	ENST00000354386		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000348476	ENST00000556134		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000348476	ENST00000423743		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000348476	ENST00000261244		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-intron	ENST00000348476	ENST00000538571		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000395168	ENST00000354386		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000395168	ENST00000556134		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000395168	ENST00000423743		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-3CDS	ENST00000395168	ENST00000261244		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
5UTR-intron	ENST00000395168	ENST00000538571		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000431317	ENST00000354386		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000431317	ENST00000556134		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000431317	ENST00000423743		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000431317	ENST00000261244		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-intron	ENST00000431317	ENST00000538571		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000354386		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000556134		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000423743		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-3CDS	ENST00000553355	ENST00000261244		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
intron-intron	ENST00000553355	ENST00000538571		TCGA	LD	OV	TCGA-29-1703-01A	ARID4A	chr14	58765418	+	KIAA0586	chr14	59006789	+
Frame-shit	ENST00000261192	ENST00000354473		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5CDS-5UTR	ENST00000261192	ENST00000496809		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
Frame-shit	ENST00000538118	ENST00000354473		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5CDS-5UTR	ENST00000538118	ENST00000496809		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
Frame-shit	ENST00000342945	ENST00000354473		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5CDS-5UTR	ENST00000342945	ENST00000496809		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
Frame-shit	ENST00000539282	ENST00000354473		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5CDS-5UTR	ENST00000539282	ENST00000496809		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
Frame-shit	ENST00000539780	ENST00000354473		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5CDS-5UTR	ENST00000539780	ENST00000496809		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5UTR-3CDS	ENST00000544418	ENST00000354473		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
5UTR-5UTR	ENST00000544418	ENST00000496809		TCGA	LD	OV	TCGA-29-1703-01A	BCAT1	chr12	25031464	-	VPS72	chr1	151150621	-
Frame-shit	ENST00000431794	ENST00000233202		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
5CDS-intron	ENST00000431794	ENST00000473367		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
5CDS-intron	ENST00000431794	ENST00000539932		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
Frame-shit	ENST00000268852	ENST00000233202		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
5CDS-intron	ENST00000268852	ENST00000473367		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
5CDS-intron	ENST00000268852	ENST00000539932		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-3CDS	ENST00000586007	ENST00000233202		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-intron	ENST00000586007	ENST00000473367		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-intron	ENST00000586007	ENST00000539932		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-3CDS	ENST00000544606	ENST00000233202		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-intron	ENST00000544606	ENST00000473367		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-intron	ENST00000544606	ENST00000539932		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-3CDS	ENST00000590081	ENST00000233202		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-intron	ENST00000590081	ENST00000473367		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
intron-intron	ENST00000590081	ENST00000539932		TCGA	LD	OV	TCGA-29-1703-01A	MYO19	chr17	34854110	-	SLC11A1	chr2	219259648	+
5CDS-intron	ENST00000601440	ENST00000256953		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000601440	ENST00000538313		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000601440	ENST00000536465		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000601440	ENST00000546331		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000601440	ENST00000537647		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000601440	ENST00000437578		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000291750	ENST00000256953		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000291750	ENST00000538313		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000291750	ENST00000536465		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000291750	ENST00000546331		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000291750	ENST00000537647		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
5CDS-intron	ENST00000291750	ENST00000437578		TCGA	LD	OV	TCGA-29-1703-01A	ZNF626	chr19	20828490	-	RERG	chr12	15490404	-
Frame-shit	ENST00000297156	ENST00000406775		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
Frame-shit	ENST00000297156	ENST00000342771		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
5CDS-intron	ENST00000297156	ENST00000403018		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
5CDS-3UTR	ENST00000297156	ENST00000489774		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
Frame-shit	ENST00000514518	ENST00000406775		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
Frame-shit	ENST00000514518	ENST00000342771		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
5CDS-intron	ENST00000514518	ENST00000403018		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
5CDS-3UTR	ENST00000514518	ENST00000489774		TCGA	LD	OV	TCGA-29-1707-02A	CAMLG	chr5	134074482	+	AUTS2	chr7	70163555	+
intron-3CDS	ENST00000591247	ENST00000225983		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-3CDS	ENST00000591247	ENST00000393622		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-intron	ENST00000591247	ENST00000336057		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-intron	ENST00000591247	ENST00000586802		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-3CDS	ENST00000293406	ENST00000225983		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-3CDS	ENST00000293406	ENST00000393622		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-intron	ENST00000293406	ENST00000336057		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-intron	ENST00000293406	ENST00000586802		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-3CDS	ENST00000585388	ENST00000225983		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-3CDS	ENST00000585388	ENST00000393622		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-intron	ENST00000585388	ENST00000336057		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
intron-intron	ENST00000585388	ENST00000586802		TCGA	LD	OV	TCGA-29-1707-02A	LSM12	chr17	42143872	-	HDAC5	chr17	42162043	-
5UTR-3CDS	ENST00000258991	ENST00000284770		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000258991	ENST00000284771		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000258991	ENST00000284767		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000583097	ENST00000284770		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000583097	ENST00000284771		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000583097	ENST00000284767		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000584379	ENST00000284770		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000584379	ENST00000284771		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000584379	ENST00000284767		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000581812	ENST00000284770		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000581812	ENST00000284771		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000581812	ENST00000284767		TCGA	LD	OV	TCGA-29-1707-02A	TEX2	chr17	62340528	-	PDLIM3	chr4	186446325	-
In-frame	ENST00000359358	ENST00000581852		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000403303		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000383096		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000300227		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000579916		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000406524		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000583930		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000402325		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000359358	ENST00000579947		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000359358	ENST00000583550		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000581852		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000403303		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000383096		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000300227		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000579916		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000406524		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000583930		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000402325		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
In-frame	ENST00000358095	ENST00000579947		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000358095	ENST00000583550		TCGA	LD	OV	TCGA-29-1710-01A	KLHL14	chr18	30321891	-	CCDC178	chr18	30554645	-
5CDS-3UTR	ENST00000254325	ENST00000473762		TCGA	LD	OV	TCGA-29-1710-01A	RFX1	chr19	14083555	-	CEACAMP3	chr19	42111196	+
intron-3UTR	ENST00000586913	ENST00000473762		TCGA	LD	OV	TCGA-29-1710-01A	RFX1	chr19	14083555	-	CEACAMP3	chr19	42111196	+
In-frame	ENST00000396981	ENST00000574876		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
In-frame	ENST00000396981	ENST00000572293		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
In-frame	ENST00000396981	ENST00000269230		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
In-frame	ENST00000396981	ENST00000301396		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5CDS-5UTR	ENST00000396981	ENST00000436683		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5CDS-intron	ENST00000396981	ENST00000570823		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5UTR-3CDS	ENST00000572484	ENST00000574876		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5UTR-3CDS	ENST00000572484	ENST00000572293		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5UTR-3CDS	ENST00000572484	ENST00000269230		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5UTR-3CDS	ENST00000572484	ENST00000301396		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5UTR-5UTR	ENST00000572484	ENST00000436683		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5UTR-intron	ENST00000572484	ENST00000570823		TCGA	LD	OV	TCGA-29-1710-01A	UBE2G1	chr17	4269566	-	PELP1	chr17	4586247	-
5CDS-intron	ENST00000301318	ENST00000593812		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
5CDS-intron	ENST00000301318	ENST00000595753		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
5CDS-intron	ENST00000301318	ENST00000431408		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
5CDS-intron	ENST00000591844	ENST00000593812		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
5CDS-intron	ENST00000591844	ENST00000595753		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
5CDS-intron	ENST00000591844	ENST00000431408		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
3UTR-intron	ENST00000594386	ENST00000593812		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
3UTR-intron	ENST00000594386	ENST00000595753		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
3UTR-intron	ENST00000594386	ENST00000431408		TCGA	LD	OV	TCGA-29-1710-01A	ZFP28	chr19	57051085	+	SLC35E1	chr19	16678980	-
In-frame	ENST00000393094	ENST00000531234		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
In-frame	ENST00000393094	ENST00000265840		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
In-frame	ENST00000393094	ENST00000443271		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
5CDS-intron	ENST00000393094	ENST00000529675		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
intron-3CDS	ENST00000531843	ENST00000531234		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
intron-3CDS	ENST00000531843	ENST00000265840		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
intron-3CDS	ENST00000531843	ENST00000443271		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
intron-intron	ENST00000531843	ENST00000529675		TCGA	LD	OV	TCGA-29-1711-01A	CUL5	chr11	107925682	+	ELMOD1	chr11	107518194	+
5UTR-3CDS	ENST00000374317	ENST00000260867		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
5UTR-intron	ENST00000374317	ENST00000485812		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
5UTR-intron	ENST00000374317	ENST00000374064		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
5UTR-intron	ENST00000374317	ENST00000374065		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
intron-3CDS	ENST00000374314	ENST00000260867		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
intron-intron	ENST00000374314	ENST00000485812		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
intron-intron	ENST00000374314	ENST00000374064		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
intron-intron	ENST00000374314	ENST00000374065		TCGA	LD	OV	TCGA-29-1711-01A	GPRIN2	chr10	46995032	-	TIMM23	chr10	51607098	+
3UTR-3CDS	ENST00000540900	ENST00000445055		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
3UTR-3CDS	ENST00000540900	ENST00000343164		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
3UTR-intron	ENST00000540900	ENST00000539668		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
3UTR-intron	ENST00000540900	ENST00000436453		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000584423	ENST00000445055		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000584423	ENST00000343164		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
5CDS-intron	ENST00000584423	ENST00000539668		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
5CDS-intron	ENST00000584423	ENST00000436453		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000247026	ENST00000445055		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000247026	ENST00000343164		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
5CDS-intron	ENST00000247026	ENST00000539668		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
5CDS-intron	ENST00000247026	ENST00000436453		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000479218	ENST00000445055		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000479218	ENST00000343164		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
5CDS-intron	ENST00000479218	ENST00000539668		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
5CDS-intron	ENST00000479218	ENST00000436453		TCGA	LD	OV	TCGA-29-1711-01A	NSRP1	chr17	28443881	+	SLC6A13	chr12	347176	-
Frame-shit	ENST00000535781	ENST00000341516		TCGA	LD	OV	TCGA-29-1711-01A	PRPF6	chr20	62616378	+	DCAF5	chr14	69529228	-
Frame-shit	ENST00000535781	ENST00000554215		TCGA	LD	OV	TCGA-29-1711-01A	PRPF6	chr20	62616378	+	DCAF5	chr14	69529228	-
Frame-shit	ENST00000535781	ENST00000556847		TCGA	LD	OV	TCGA-29-1711-01A	PRPF6	chr20	62616378	+	DCAF5	chr14	69529228	-
Frame-shit	ENST00000535781	ENST00000557386		TCGA	LD	OV	TCGA-29-1711-01A	PRPF6	chr20	62616378	+	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000535781	ENST00000389997		TCGA	LD	OV	TCGA-29-1711-01A	PRPF6	chr20	62616378	+	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000535781	ENST00000553293		TCGA	LD	OV	TCGA-29-1711-01A	PRPF6	chr20	62616378	+	DCAF5	chr14	69529228	-
In-frame	ENST00000389467	ENST00000388948		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000389467	ENST00000284395		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000389467	ENST00000532029		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
5CDS-intron	ENST00000389467	ENST00000532145		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000446231	ENST00000388948		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000446231	ENST00000284395		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000446231	ENST00000532029		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
5CDS-intron	ENST00000446231	ENST00000532145		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000565224	ENST00000388948		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000565224	ENST00000284395		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
In-frame	ENST00000565224	ENST00000532029		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
5CDS-intron	ENST00000565224	ENST00000532145		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
intron-3CDS	ENST00000567737	ENST00000388948		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
intron-3CDS	ENST00000567737	ENST00000284395		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
intron-3CDS	ENST00000567737	ENST00000532029		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
intron-intron	ENST00000567737	ENST00000532145		TCGA	LD	OV	TCGA-29-1711-01A	SMG1	chr16	18907374	-	LRRK1	chr15	101528839	+
5CDS-5UTR	ENST00000454300	ENST00000340740		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-5UTR	ENST00000454300	ENST00000598904		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-5UTR	ENST00000454300	ENST00000591812		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-intron	ENST00000454300	ENST00000602238		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-5UTR	ENST00000263635	ENST00000340740		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-5UTR	ENST00000263635	ENST00000598904		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-5UTR	ENST00000263635	ENST00000591812		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-intron	ENST00000263635	ENST00000602238		TCGA	LD	OV	TCGA-29-1711-01A	TANC1	chr2	159954346	+	RINL	chr19	39362510	-
5CDS-3UTR	ENST00000295694	ENST00000361813		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
5CDS-intron	ENST00000295694	ENST00000368267		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
5CDS-intron	ENST00000295694	ENST00000489907		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
intron-3UTR	ENST00000357501	ENST00000361813		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
intron-intron	ENST00000357501	ENST00000368267		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
intron-intron	ENST00000357501	ENST00000489907		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
5CDS-3UTR	ENST00000405535	ENST00000361813		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
5CDS-intron	ENST00000405535	ENST00000368267		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
5CDS-intron	ENST00000405535	ENST00000489907		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
3UTR-3UTR	ENST00000495881	ENST00000361813		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
3UTR-intron	ENST00000495881	ENST00000368267		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
3UTR-intron	ENST00000495881	ENST00000489907		TCGA	LD	OV	TCGA-29-1711-01A	TMEM79	chr1	156255546	+	SMG5	chr1	156219070	-
Frame-shit	ENST00000590923	ENST00000214869		TCGA	LD	OV	TCGA-29-1761-01A	AP1M2	chr19	10697866	-	TMED1	chr19	10943889	-
Frame-shit	ENST00000590923	ENST00000591695		TCGA	LD	OV	TCGA-29-1761-01A	AP1M2	chr19	10697866	-	TMED1	chr19	10943889	-
Frame-shit	ENST00000590923	ENST00000588289		TCGA	LD	OV	TCGA-29-1761-01A	AP1M2	chr19	10697866	-	TMED1	chr19	10943889	-
Frame-shit	ENST00000250244	ENST00000214869		TCGA	LD	OV	TCGA-29-1761-01A	AP1M2	chr19	10697866	-	TMED1	chr19	10943889	-
Frame-shit	ENST00000250244	ENST00000591695		TCGA	LD	OV	TCGA-29-1761-01A	AP1M2	chr19	10697866	-	TMED1	chr19	10943889	-
Frame-shit	ENST00000250244	ENST00000588289		TCGA	LD	OV	TCGA-29-1761-01A	AP1M2	chr19	10697866	-	TMED1	chr19	10943889	-
Frame-shit	ENST00000396743	ENST00000218230		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
5CDS-5UTR	ENST00000396743	ENST00000478242		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
In-frame	ENST00000156084	ENST00000218230		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
5CDS-5UTR	ENST00000156084	ENST00000478242		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
In-frame	ENST00000376488	ENST00000218230		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
5CDS-5UTR	ENST00000376488	ENST00000478242		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
Frame-shit	ENST00000428668	ENST00000218230		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
5CDS-5UTR	ENST00000428668	ENST00000478242		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
5UTR-3CDS	ENST00000484499	ENST00000218230		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
5UTR-5UTR	ENST00000484499	ENST00000478242		TCGA	LD	OV	TCGA-29-1761-01A	OTUD5	chrX	48791737	-	PCSK1N	chrX	48690751	-
In-frame	ENST00000373202	ENST00000398972		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398973		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000356340		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398964		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398968		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398974		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398969		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398966		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398971		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000354547		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000357811		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000398978		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000520267		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000520133		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000517713		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
In-frame	ENST00000373202	ENST00000522165		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
5CDS-intron	ENST00000373202	ENST00000484990		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398972		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398973		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000356340		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398964		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398968		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398974		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398969		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398966		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398971		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000354547		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000357811		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000398978		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000520267		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000520133		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000517713		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-3CDS	ENST00000486993	ENST00000522165		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
intron-intron	ENST00000486993	ENST00000484990		TCGA	LD	OV	TCGA-29-1761-01A	SGPL1	chr10	72617447	+	COL13A1	chr10	71655306	+
Frame-shit	ENST00000595535	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000595535	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000595535	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000595535	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000595535	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000595535	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000352632	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000352632	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000352632	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000352632	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000352632	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000352632	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000344104	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000344104	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000344104	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-intron	ENST00000344104	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-intron	ENST00000344104	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-intron	ENST00000344104	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000338932	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000338932	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000338932	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000338932	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000338932	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000338932	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000598249	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000598249	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000598249	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000598249	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000598249	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000598249	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000392025	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000392025	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000392025	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000392025	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000392025	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000392025	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000392023	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000392023	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
Frame-shit	ENST00000392023	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000392023	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000392023	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
5CDS-intron	ENST00000392023	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000593816	ENST00000393452		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000593816	ENST00000393454		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000593816	ENST00000335725		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-intron	ENST00000593816	ENST00000555565		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-intron	ENST00000593816	ENST00000357382		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-intron	ENST00000593816	ENST00000555880		TCGA	LD	OV	TCGA-29-1762-01A	SPTBN4	chr19	41040250	+	TDP1	chr14	90485660	+
intron-3CDS	ENST00000368874	ENST00000368868		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368874	ENST00000447402		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368874	ENST00000426705		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368874	ENST00000435071		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368874	ENST00000473693		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000368868		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000447402		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000271657	ENST00000426705		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000271657	ENST00000435071		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000271657	ENST00000473693		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000368868		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000447402		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368875	ENST00000426705		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368875	ENST00000435071		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368875	ENST00000473693		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368873	ENST00000368868		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368873	ENST00000447402		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
Frame-shit	ENST00000368873	ENST00000426705		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368873	ENST00000435071		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
5CDS-5UTR	ENST00000368873	ENST00000473693		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000368868		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000447402		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000529142	ENST00000426705		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000529142	ENST00000435071		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000529142	ENST00000473693		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368872	ENST00000368868		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368872	ENST00000447402		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-3CDS	ENST00000368872	ENST00000426705		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368872	ENST00000435071		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
intron-5UTR	ENST00000368872	ENST00000473693		TCGA	LD	OV	TCGA-29-1763-01A	PI4KB	chr1	151282687	-	SELENBP1	chr1	151342245	-
In-frame	ENST00000599117	ENST00000409235		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000599117	ENST00000410018		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-3UTR	ENST00000599117	ENST00000215069		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-intron	ENST00000599117	ENST00000467739		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000432763	ENST00000409235		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000432763	ENST00000410018		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-3UTR	ENST00000432763	ENST00000215069		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-intron	ENST00000432763	ENST00000467739		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000402194	ENST00000409235		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000402194	ENST00000410018		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-3UTR	ENST00000402194	ENST00000215069		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-intron	ENST00000402194	ENST00000467739		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000359191	ENST00000409235		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000359191	ENST00000410018		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-3UTR	ENST00000359191	ENST00000215069		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-intron	ENST00000359191	ENST00000467739		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000598725	ENST00000409235		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000598725	ENST00000410018		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-3UTR	ENST00000598725	ENST00000215069		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
5CDS-intron	ENST00000598725	ENST00000467739		TCGA	LD	OV	TCGA-29-1766-01A	SUPT5H	chr19	39936582	+	CATSPERG	chr19	38855583	+
In-frame	ENST00000342704	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
In-frame	ENST00000342704	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
5UTR-3CDS	ENST00000375279	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
5UTR-3CDS	ENST00000375279	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000344201	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000344201	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000397798	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000397798	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000346541	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000346541	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000397800	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000397800	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000492345	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000492345	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000359606	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000359606	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000491618	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000491618	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000543126	ENST00000278980		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
intron-3CDS	ENST00000543126	ENST00000446419		TCGA	LD	OV	TCGA-29-1768-01A	CBFA2T2	chr20	32078107	+	COMMD7	chr20	31294562	-
In-frame	ENST00000564085	ENST00000264538		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
5CDS-intron	ENST00000564085	ENST00000468021		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
In-frame	ENST00000268533	ENST00000264538		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
5CDS-intron	ENST00000268533	ENST00000468021		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
In-frame	ENST00000568787	ENST00000264538		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
5CDS-intron	ENST00000568787	ENST00000468021		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
In-frame	ENST00000437314	ENST00000264538		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
5CDS-intron	ENST00000437314	ENST00000468021		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
intron-3CDS	ENST00000563839	ENST00000264538		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
intron-intron	ENST00000563839	ENST00000468021		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
intron-3CDS	ENST00000564031	ENST00000264538		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
intron-intron	ENST00000564031	ENST00000468021		TCGA	LD	OV	TCGA-29-1769-01A	NUDT7	chr16	77759481	+	IFT57	chr3	107886711	-
5CDS-intron	ENST00000261653	ENST00000609686		TCGA	LD	OV	TCGA-29-1769-01A	STX2	chr12	131323615	-	GRIN2B	chr12	14134510	-
5CDS-intron	ENST00000392373	ENST00000609686		TCGA	LD	OV	TCGA-29-1769-01A	STX2	chr12	131323615	-	GRIN2B	chr12	14134510	-
In-frame	ENST00000245932	ENST00000401705		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
Frame-shit	ENST00000245932	ENST00000456399		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
Frame-shit	ENST00000245932	ENST00000396737		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
Frame-shit	ENST00000245932	ENST00000451287		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
5CDS-3UTR	ENST00000245932	ENST00000324688		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
5CDS-3UTR	ENST00000245932	ENST00000396735		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
5CDS-3UTR	ENST00000245932	ENST00000401593		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
5CDS-3UTR	ENST00000245932	ENST00000396736		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3CDS	ENST00000586619	ENST00000401705		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3CDS	ENST00000586619	ENST00000456399		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3CDS	ENST00000586619	ENST00000396737		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3CDS	ENST00000586619	ENST00000451287		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3UTR	ENST00000586619	ENST00000324688		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3UTR	ENST00000586619	ENST00000396735		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3UTR	ENST00000586619	ENST00000401593		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
3UTR-3UTR	ENST00000586619	ENST00000396736		TCGA	LD	OV	TCGA-29-1769-01A	VASP	chr19	46011034	+	PPM1N	chr19	46005275	+
intron-intron	ENST00000255890	ENST00000420993		TCGA	LD	OV	TCGA-29-1774-01A	ZDHHC8P1	chr22	23742727	-	NCAPH2	chr22	50959301	+
intron-intron	ENST00000255890	ENST00000395698		TCGA	LD	OV	TCGA-29-1774-01A	ZDHHC8P1	chr22	23742727	-	NCAPH2	chr22	50959301	+
intron-intron	ENST00000255890	ENST00000395701		TCGA	LD	OV	TCGA-29-1774-01A	ZDHHC8P1	chr22	23742727	-	NCAPH2	chr22	50959301	+
intron-intron	ENST00000255890	ENST00000299821		TCGA	LD	OV	TCGA-29-1774-01A	ZDHHC8P1	chr22	23742727	-	NCAPH2	chr22	50959301	+
intron-intron	ENST00000255890	ENST00000520297		TCGA	LD	OV	TCGA-29-1774-01A	ZDHHC8P1	chr22	23742727	-	NCAPH2	chr22	50959301	+
Frame-shit	ENST00000582160	ENST00000476258		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582160	ENST00000405458		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000582160	ENST00000409753		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582160	ENST00000482348		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582160	ENST00000356033		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582160	ENST00000470924		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582160	ENST00000481647		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000582160	ENST00000392566		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000582160	ENST00000581874		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000582160	ENST00000465454		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000245552	ENST00000476258		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000245552	ENST00000405458		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000245552	ENST00000409753		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000245552	ENST00000482348		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000245552	ENST00000356033		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000245552	ENST00000470924		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000245552	ENST00000481647		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000245552	ENST00000392566		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000245552	ENST00000581874		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000245552	ENST00000465454		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000582170	ENST00000476258		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582170	ENST00000405458		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582170	ENST00000409753		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582170	ENST00000482348		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582170	ENST00000356033		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582170	ENST00000470924		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000582170	ENST00000481647		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000582170	ENST00000392566		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000582170	ENST00000581874		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000582170	ENST00000465454		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000578337	ENST00000476258		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000578337	ENST00000405458		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000578337	ENST00000409753		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000578337	ENST00000482348		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000578337	ENST00000356033		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000578337	ENST00000470924		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000578337	ENST00000481647		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
In-frame	ENST00000578337	ENST00000392566		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000578337	ENST00000581874		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000578337	ENST00000465454		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000476258		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000405458		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000409753		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000482348		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000356033		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000470924		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000481647		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000579082	ENST00000392566		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-3UTR	ENST00000579082	ENST00000581874		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
5UTR-intron	ENST00000579082	ENST00000465454		TCGA	LD	OV	TCGA-29-1776-01A	NT5C	chr17	73127276	-	HN1	chr17	73132345	-
Frame-shit	ENST00000416293	ENST00000389153		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000416293	ENST00000608853		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000416293	ENST00000377617		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000416293	ENST00000550104		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000416293	ENST00000542287		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000416293	ENST00000535949		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
5CDS-intron	ENST00000416293	ENST00000549455		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000261733	ENST00000389153		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000261733	ENST00000608853		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000261733	ENST00000377617		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000261733	ENST00000550104		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000261733	ENST00000542287		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
Frame-shit	ENST00000261733	ENST00000535949		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
5CDS-intron	ENST00000261733	ENST00000549455		TCGA	LD	OV	TCGA-29-1777-01A	ALDH2	chr12	112204900	+	ATXN2	chr12	111908546	-
In-frame	ENST00000318003	ENST00000293330		TCGA	LD	OV	TCGA-29-1777-01A	CC2D1A	chr19	14017314	+	HCRT	chr17	40336546	-
In-frame	ENST00000589606	ENST00000293330		TCGA	LD	OV	TCGA-29-1777-01A	CC2D1A	chr19	14017314	+	HCRT	chr17	40336546	-
In-frame	ENST00000372797	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372797	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372802	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372802	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372792	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372792	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372798	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372798	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000340450	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000340450	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372805	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
In-frame	ENST00000372805	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
intron-3CDS	ENST00000479759	ENST00000281038		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
intron-3CDS	ENST00000479759	ENST00000528850		TCGA	LD	OV	TCGA-29-1778-01A	CAP1	chr1	40525842	+	NARS2	chr11	78154804	-
Frame-shit	ENST00000282041	ENST00000243662		TCGA	LD	OV	TCGA-29-1778-01A	EPG5	chr18	43467716	-	RAB38	chr11	87847308	-
5UTR-3CDS	ENST00000585906	ENST00000243662		TCGA	LD	OV	TCGA-29-1778-01A	EPG5	chr18	43467716	-	RAB38	chr11	87847308	-
5UTR-3CDS	ENST00000476510	ENST00000372067		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-3CDS	ENST00000476510	ENST00000417285		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-3CDS	ENST00000476510	ENST00000324450		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-3CDS	ENST00000476510	ENST00000413642		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-3CDS	ENST00000476510	ENST00000372055		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000482630		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000425836		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000372064		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000372077		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000520948		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000523873		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000523950		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000518689		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000523125		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000457104		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000518824		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5UTR-intron	ENST00000476510	ENST00000230480		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307126	ENST00000372067		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
In-frame	ENST00000307126	ENST00000417285		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307126	ENST00000324450		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307126	ENST00000413642		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307126	ENST00000372055		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000482630		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000425836		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000372064		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000372077		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000520948		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000523873		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000523950		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000518689		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000523125		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000457104		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000518824		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307126	ENST00000230480		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
In-frame	ENST00000307114	ENST00000372067		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307114	ENST00000417285		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307114	ENST00000324450		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000307114	ENST00000413642		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
In-frame	ENST00000307114	ENST00000372055		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000482630		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000425836		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000372064		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000372077		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000520948		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000523873		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000523950		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000518689		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000523125		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000457104		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000518824		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
5CDS-intron	ENST00000307114	ENST00000230480		TCGA	LD	OV	TCGA-29-1778-01A	GTPBP2	chr6	43592247	-	VEGFA	chr6	43752278	+
Frame-shit	ENST00000545844	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000545844	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000545844	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000567887	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000567887	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000567887	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000372915	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000372915	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000372915	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000361689	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000361689	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000361689	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000539005	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000539005	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000539005	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000317713	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000317713	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000317713	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000564288	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000564288	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000564288	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000289893	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000289893	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000289893	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000536367	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000536367	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-intron	ENST00000536367	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000484793	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000484793	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-intron	ENST00000484793	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000602421	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000602421	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-intron	ENST00000602421	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000476350	ENST00000539563		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000476350	ENST00000490035		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
intron-intron	ENST00000476350	ENST00000498645		TCGA	LD	OV	TCGA-29-1778-01A	MACF1	chr1	39847824	+	LSAMP	chr3	116163802	-
In-frame	ENST00000506198	ENST00000313174		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000506198	ENST00000305425		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000506198	ENST00000354591		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000506198	ENST00000359684		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000381334	ENST00000313174		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000381334	ENST00000305425		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000381334	ENST00000354591		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000381334	ENST00000359684		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000542052	ENST00000313174		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000542052	ENST00000305425		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000542052	ENST00000354591		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
In-frame	ENST00000542052	ENST00000359684		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
3UTR-3CDS	ENST00000514904	ENST00000313174		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
3UTR-3CDS	ENST00000514904	ENST00000305425		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
3UTR-3CDS	ENST00000514904	ENST00000354591		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
3UTR-3CDS	ENST00000514904	ENST00000359684		TCGA	LD	OV	TCGA-29-1778-01A	TMEM165	chr4	56290810	+	DACH1	chr13	72063280	-
5CDS-5UTR	ENST00000609104	ENST00000538132		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000609104	ENST00000217426		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
5CDS-5UTR	ENST00000609104	ENST00000468908		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000277575	ENST00000538132		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000277575	ENST00000217426		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000277575	ENST00000468908		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000379237	ENST00000538132		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000379237	ENST00000217426		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000379237	ENST00000468908		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000443016	ENST00000538132		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000443016	ENST00000217426		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000443016	ENST00000468908		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000609853	ENST00000538132		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000609853	ENST00000217426		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
intron-5UTR	ENST00000609853	ENST00000468908		TCGA	LD	OV	TCGA-29-1778-01A	USP6NL	chr10	11639630	-	AHCY	chr20	32883391	-
5UTR-3CDS	ENST00000462705	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000462705	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000462705	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000462705	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000462705	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000462705	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-3CDS	ENST00000393785	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000393785	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000393785	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000393785	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000393785	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000393785	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-3CDS	ENST00000481632	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000481632	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000481632	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000481632	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000481632	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000481632	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-3CDS	ENST00000471418	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000471418	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000471418	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000471418	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000471418	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000471418	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-3CDS	ENST00000357258	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000357258	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000357258	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000357258	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000357258	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000357258	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-3CDS	ENST00000464560	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000464560	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000464560	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000464560	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000464560	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000464560	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-3CDS	ENST00000488663	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000488663	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000488663	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000488663	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000488663	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
5UTR-intron	ENST00000488663	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-3CDS	ENST00000474710	ENST00000337907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000474710	ENST00000377464		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000474710	ENST00000400907		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000474710	ENST00000400908		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000474710	ENST00000476556		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
intron-intron	ENST00000474710	ENST00000460659		TCGA	LD	OV	TCGA-29-1778-01A	ZBTB20	chr3	114619151	-	RERE	chr1	8674745	-
In-frame	ENST00000262593	ENST00000426263		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
5CDS-intron	ENST00000262593	ENST00000475162		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
5CDS-intron	ENST00000262593	ENST00000415851		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
5CDS-intron	ENST00000262593	ENST00000372500		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
intron-3CDS	ENST00000395939	ENST00000426263		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
intron-intron	ENST00000395939	ENST00000475162		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
intron-intron	ENST00000395939	ENST00000415851		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
intron-intron	ENST00000395939	ENST00000372500		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
3UTR-3CDS	ENST00000491469	ENST00000426263		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
3UTR-intron	ENST00000491469	ENST00000475162		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
3UTR-intron	ENST00000491469	ENST00000415851		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
3UTR-intron	ENST00000491469	ENST00000372500		TCGA	LD	OV	TCGA-29-1781-01A	DOK5	chr20	53092551	+	SLC2A1	chr1	43408992	-
intron-intron	ENST00000264674	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000264674	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000392736	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000464456	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000472280	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-5UTR	ENST00000494292	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000468789	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000460814	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000433243	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000316428		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-5UTR	ENST00000485957	ENST00000264676		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000523069		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000397805		TCGA	LD	OV	TCGA-29-1781-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
Frame-shit	ENST00000258991	ENST00000539111		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
5CDS-5UTR	ENST00000258991	ENST00000582501		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
Frame-shit	ENST00000583097	ENST00000539111		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
5CDS-5UTR	ENST00000583097	ENST00000582501		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
Frame-shit	ENST00000584379	ENST00000539111		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
5CDS-5UTR	ENST00000584379	ENST00000582501		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
intron-3CDS	ENST00000581812	ENST00000539111		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
intron-5UTR	ENST00000581812	ENST00000582501		TCGA	LD	OV	TCGA-29-1781-01A	TEX2	chr17	62289934	-	POLG2	chr17	62481985	-
5CDS-intron	ENST00000304877	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000304877	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000304877	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000304877	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000304877	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534000	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534000	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534000	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534000	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534000	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368402	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368402	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368402	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368402	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368402	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368388	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368388	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368388	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368388	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000368388	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000527711	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000527711	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000527711	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000527711	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000527711	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000528193	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000528193	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000528193	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000528193	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000528193	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000532429	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000532429	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000532429	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000532429	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000532429	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534199	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534199	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534199	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534199	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000534199	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000392482	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000392482	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000392482	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000392482	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000392482	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000524679	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000524679	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000524679	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000524679	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
5CDS-intron	ENST00000524679	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000530868	ENST00000368416		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000530868	ENST00000368417		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000530868	ENST00000546092		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000530868	ENST00000545433		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
intron-intron	ENST00000530868	ENST00000476571		TCGA	LD	OV	TCGA-29-1781-01A	TPD52L1	chr6	125541339	+	NKAIN2	chr6	125112485	+
Frame-shit	ENST00000415609	ENST00000420581		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
In-frame	ENST00000415609	ENST00000489031		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000415609	ENST00000475434		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000349511	ENST00000420581		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
In-frame	ENST00000349511	ENST00000489031		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000349511	ENST00000475434		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000361055	ENST00000420581		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
In-frame	ENST00000361055	ENST00000489031		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000361055	ENST00000475434		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000540295	ENST00000420581		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000540295	ENST00000489031		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
intron-3CDS	ENST00000540295	ENST00000475434		TCGA	LD	OV	TCGA-29-1781-01A	UBA3	chr3	69120686	-	LMOD3	chr3	69158272	-
Frame-shit	ENST00000263278	ENST00000292123		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
Frame-shit	ENST00000263278	ENST00000592224		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000263278	ENST00000586934		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000263278	ENST00000454510		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000263278	ENST00000433404		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000263278	ENST00000588852		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000263278	ENST00000538656		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
Frame-shit	ENST00000599157	ENST00000292123		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
Frame-shit	ENST00000599157	ENST00000592224		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000599157	ENST00000586934		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000599157	ENST00000454510		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000599157	ENST00000433404		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000599157	ENST00000588852		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000599157	ENST00000538656		TCGA	LD	OV	TCGA-29-1783-01A	HSD17B14	chr19	49337533	-	SAFB	chr19	5661569	+
5CDS-intron	ENST00000361574	ENST00000355496		TCGA	LD	OV	TCGA-29-1783-01A	R3HDM4	chr19	913087	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000361574	ENST00000263265		TCGA	LD	OV	TCGA-29-1783-01A	R3HDM4	chr19	913087	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000361574	ENST00000596713		TCGA	LD	OV	TCGA-29-1783-01A	R3HDM4	chr19	913087	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000587975	ENST00000355496		TCGA	LD	OV	TCGA-29-1783-01A	R3HDM4	chr19	913087	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000587975	ENST00000263265		TCGA	LD	OV	TCGA-29-1783-01A	R3HDM4	chr19	913087	-	PLEKHA4	chr19	49344567	-
5CDS-intron	ENST00000587975	ENST00000596713		TCGA	LD	OV	TCGA-29-1783-01A	R3HDM4	chr19	913087	-	PLEKHA4	chr19	49344567	-
3UTR-3CDS	ENST00000491455	ENST00000391895		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
3UTR-3CDS	ENST00000491455	ENST00000391894		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
3UTR-3CDS	ENST00000491455	ENST00000444842		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000415093	ENST00000391895		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000415093	ENST00000391894		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000415093	ENST00000444842		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000366957	ENST00000391895		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000366957	ENST00000391894		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000366957	ENST00000444842		TCGA	LD	OV	TCGA-29-1783-01A	SMYD2	chr1	214454770	+	KCNK2	chr1	215259711	+
Frame-shit	ENST00000301281	ENST00000538487		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
Frame-shit	ENST00000301281	ENST00000374181		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
Frame-shit	ENST00000301281	ENST00000374177		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
Frame-shit	ENST00000301281	ENST00000544773		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000301281	ENST00000545715		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000301281	ENST00000535756		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000301281	ENST00000609222		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000301281	ENST00000455714		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
In-frame	ENST00000394765	ENST00000538487		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
In-frame	ENST00000394765	ENST00000374181		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
In-frame	ENST00000394765	ENST00000374177		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
In-frame	ENST00000394765	ENST00000544773		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000394765	ENST00000545715		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000394765	ENST00000535756		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000394765	ENST00000609222		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
5CDS-5UTR	ENST00000394765	ENST00000455714		TCGA	LD	OV	TCGA-29-1783-01A	UBXN6	chr19	4452361	-	GRM4	chr6	34008525	-
In-frame	ENST00000394906	ENST00000314616		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
In-frame	ENST00000394906	ENST00000347486		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
In-frame	ENST00000394908	ENST00000314616		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
In-frame	ENST00000394908	ENST00000347486		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
In-frame	ENST00000585169	ENST00000314616		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
In-frame	ENST00000585169	ENST00000347486		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
5UTR-3CDS	ENST00000577789	ENST00000314616		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
5UTR-3CDS	ENST00000577789	ENST00000347486		TCGA	LD	OV	TCGA-29-1784-01A	FLOT2	chr17	27224544	-	SUPT6H	chr17	27013357	+
In-frame	ENST00000354179	ENST00000341520		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000354179	ENST00000416649		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000354179	ENST00000294129		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000439151	ENST00000341520		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000439151	ENST00000416649		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000439151	ENST00000294129		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000347982	ENST00000341520		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000347982	ENST00000416649		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000347982	ENST00000294129		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000361032	ENST00000341520		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000361032	ENST00000416649		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000361032	ENST00000294129		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000511258	ENST00000341520		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000511258	ENST00000416649		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
In-frame	ENST00000511258	ENST00000294129		TCGA	LD	OV	TCGA-29-1784-01A	NSD1	chr5	176563031	+	NCKIPSD	chr3	48717662	-
5CDS-5UTR	ENST00000426333	ENST00000540511		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000426333	ENST00000322765		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000592576	ENST00000540511		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000592576	ENST00000322765		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000591382	ENST00000540511		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000591382	ENST00000322765		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000402521	ENST00000540511		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
5CDS-5UTR	ENST00000402521	ENST00000322765		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
intron-5UTR	ENST00000589211	ENST00000540511		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
intron-5UTR	ENST00000589211	ENST00000322765		TCGA	LD	OV	TCGA-29-1785-01A	EFTUD2	chr17	42929777	-	PLCD3	chr17	43197781	-
Frame-shit	ENST00000202028	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000373950	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000441639	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000373946	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000338074	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000373941	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
intron-3CDS	ENST00000479336	ENST00000376309		TCGA	LD	OV	TCGA-29-1785-01A	EPB41L1	chr20	34810316	+	DEFB123	chr20	30037832	+
5UTR-3CDS	ENST00000438666	ENST00000554962		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
5UTR-3CDS	ENST00000438666	ENST00000379881		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
5UTR-3CDS	ENST00000438666	ENST00000317764		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000451493	ENST00000554962		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000451493	ENST00000379881		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000451493	ENST00000317764		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000355182	ENST00000554962		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000355182	ENST00000379881		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000355182	ENST00000317764		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000494062	ENST00000554962		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000494062	ENST00000379881		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000494062	ENST00000317764		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
5UTR-3CDS	ENST00000495510	ENST00000554962		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
5UTR-3CDS	ENST00000495510	ENST00000379881		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
5UTR-3CDS	ENST00000495510	ENST00000317764		TCGA	LD	OV	TCGA-29-1785-01A	SPG20	chr13	36920362	-	SOHLH2	chr13	36776230	-
intron-3CDS	ENST00000448120	ENST00000228799		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-3CDS	ENST00000448120	ENST00000419778		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-3CDS	ENST00000448120	ENST00000542548		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-intron	ENST00000448120	ENST00000545509		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-3CDS	ENST00000397132	ENST00000228799		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-3CDS	ENST00000397132	ENST00000419778		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-3CDS	ENST00000397132	ENST00000542548		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
intron-intron	ENST00000397132	ENST00000545509		TCGA	LD	OV	TCGA-29-1785-01A	TULP3	chr12	2986448	+	ITFG2	chr12	2931960	+
In-frame	ENST00000395863	ENST00000260605		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395863	ENST00000406852		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395863	ENST00000443170		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395863	ENST00000398823		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395863	ENST00000489222		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395863	ENST00000605786		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
In-frame	ENST00000395864	ENST00000260605		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395864	ENST00000406852		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395864	ENST00000443170		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395864	ENST00000398823		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395864	ENST00000489222		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000395864	ENST00000605786		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
In-frame	ENST00000450594	ENST00000260605		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000450594	ENST00000406852		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000450594	ENST00000443170		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000450594	ENST00000398823		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000450594	ENST00000489222		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5CDS-intron	ENST00000450594	ENST00000605786		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5UTR-3CDS	ENST00000460817	ENST00000260605		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5UTR-intron	ENST00000460817	ENST00000406852		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5UTR-intron	ENST00000460817	ENST00000443170		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5UTR-intron	ENST00000460817	ENST00000398823		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5UTR-intron	ENST00000460817	ENST00000489222		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
5UTR-intron	ENST00000460817	ENST00000605786		TCGA	LD	OV	TCGA-29-2414-01A	BMP7	chr20	55777531	-	DYNC2LI1	chr2	44031781	+
Frame-shit	ENST00000360843	ENST00000410080		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5CDS-intron	ENST00000360843	ENST00000486100		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
Frame-shit	ENST00000431350	ENST00000410080		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5CDS-intron	ENST00000431350	ENST00000486100		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
Frame-shit	ENST00000442919	ENST00000410080		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5CDS-intron	ENST00000442919	ENST00000486100		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
In-frame	ENST00000521943	ENST00000410080		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5CDS-intron	ENST00000521943	ENST00000486100		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
Frame-shit	ENST00000434911	ENST00000410080		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5CDS-intron	ENST00000434911	ENST00000486100		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5UTR-3CDS	ENST00000486857	ENST00000410080		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
5UTR-intron	ENST00000486857	ENST00000486100		TCGA	LD	OV	TCGA-29-2425-01A	TLK1	chr2	171917591	-	PRPF40A	chr2	153537850	-
intron-5UTR	ENST00000588757	ENST00000585807		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-intron	ENST00000588757	ENST00000225929		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-5UTR	ENST00000420359	ENST00000585807		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-intron	ENST00000420359	ENST00000225929		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-5UTR	ENST00000449624	ENST00000585807		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-intron	ENST00000449624	ENST00000225929		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-5UTR	ENST00000421097	ENST00000585807		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-intron	ENST00000421097	ENST00000225929		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-5UTR	ENST00000590958	ENST00000585807		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
intron-intron	ENST00000590958	ENST00000225929		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
5UTR-5UTR	ENST00000393818	ENST00000585807		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
5UTR-intron	ENST00000393818	ENST00000225929		TCGA	LD	OV	TCGA-29-2427-01A	COASY	chr17	40714306	+	HSD17B1	chr17	40704901	+
5CDS-5UTR	ENST00000397910	ENST00000254066		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000397910	ENST00000394089		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000397910	ENST00000425707		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000397910	ENST00000394086		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000397910	ENST00000394081		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000397910	ENST00000420042		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000380951	ENST00000254066		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000380951	ENST00000394089		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000380951	ENST00000425707		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-intron	ENST00000380951	ENST00000394086		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-intron	ENST00000380951	ENST00000394081		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-intron	ENST00000380951	ENST00000420042		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000596956	ENST00000254066		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000596956	ENST00000394089		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000596956	ENST00000425707		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-intron	ENST00000596956	ENST00000394086		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-intron	ENST00000596956	ENST00000394081		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
intron-intron	ENST00000596956	ENST00000420042		TCGA	LD	OV	TCGA-29-2428-01A	MUC16	chr19	9045564	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000568224	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000568224	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000535392	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000535392	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000359984	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000359984	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000360019	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000360019	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000569430	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000569430	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000333496	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000333496	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000355477	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000355477	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000354630	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000354630	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000357806	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000357806	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000357857	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000357857	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000567963	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000567963	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000395653	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000395653	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000565316	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-intron	ENST00000565316	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000357076	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000357076	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000567160	ENST00000329967		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
intron-intron	ENST00000567160	ENST00000347067		TCGA	LD	OV	TCGA-29-A5NZ-01A	CLN3	chr16	28497668	-	SIVA1	chr14	105225556	+
5CDS-5UTR	ENST00000358377	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000358377	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-intron	ENST00000358377	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000353777	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000353777	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-intron	ENST00000353777	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
intron-5UTR	ENST00000394234	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
intron-5UTR	ENST00000394234	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
intron-intron	ENST00000394234	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000509153	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000509153	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-intron	ENST00000509153	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000555042	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-5UTR	ENST00000555042	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5CDS-intron	ENST00000555042	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
3UTR-5UTR	ENST00000510612	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
3UTR-5UTR	ENST00000510612	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
3UTR-intron	ENST00000510612	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5UTR-5UTR	ENST00000553457	ENST00000361339		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5UTR-5UTR	ENST00000553457	ENST00000426508		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
5UTR-intron	ENST00000553457	ENST00000439987		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF4	chr14	73404774	+	IFT140	chr16	1576801	-
In-frame	ENST00000341516	ENST00000487861		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000341516	ENST00000471583		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000341516	ENST00000487270		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000341516	ENST00000488612		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000341516	ENST00000390683		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5CDS-3UTR	ENST00000341516	ENST00000469165		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000554215	ENST00000487861		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000554215	ENST00000471583		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000554215	ENST00000487270		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000554215	ENST00000488612		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000554215	ENST00000390683		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5CDS-3UTR	ENST00000554215	ENST00000469165		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000556847	ENST00000487861		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000556847	ENST00000471583		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000556847	ENST00000487270		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000556847	ENST00000488612		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
Frame-shit	ENST00000556847	ENST00000390683		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5CDS-3UTR	ENST00000556847	ENST00000469165		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000557386	ENST00000487861		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000557386	ENST00000471583		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000557386	ENST00000487270		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000557386	ENST00000488612		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000557386	ENST00000390683		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5CDS-3UTR	ENST00000557386	ENST00000469165		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000389997	ENST00000487861		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000389997	ENST00000471583		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000389997	ENST00000487270		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000389997	ENST00000488612		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
In-frame	ENST00000389997	ENST00000390683		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5CDS-3UTR	ENST00000389997	ENST00000469165		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000553293	ENST00000487861		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000553293	ENST00000471583		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000553293	ENST00000487270		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000553293	ENST00000488612		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000553293	ENST00000390683		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3UTR	ENST00000553293	ENST00000469165		TCGA	LD	OV	TCGA-29-A5NZ-01A	DCAF5	chr14	69558391	-	RAD51B	chr14	68934889	+
5UTR-3CDS	ENST00000394071	ENST00000261980		TCGA	LD	OV	TCGA-29-A5NZ-01A	ELMSAN1	chr14	74253805	-	VSX2	chr14	74707885	+
intron-3CDS	ENST00000286523	ENST00000261980		TCGA	LD	OV	TCGA-29-A5NZ-01A	ELMSAN1	chr14	74253805	-	VSX2	chr14	74707885	+
intron-3CDS	ENST00000486739	ENST00000261980		TCGA	LD	OV	TCGA-29-A5NZ-01A	ELMSAN1	chr14	74253805	-	VSX2	chr14	74707885	+
Frame-shit	ENST00000544305	ENST00000372009		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000544305	ENST00000361297		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
5CDS-intron	ENST00000544305	ENST00000477968		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000374630	ENST00000372009		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000374630	ENST00000361297		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
5CDS-intron	ENST00000374630	ENST00000477968		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000400191	ENST00000372009		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000400191	ENST00000361297		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
5CDS-intron	ENST00000400191	ENST00000477968		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000374632	ENST00000372009		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
Frame-shit	ENST00000374632	ENST00000361297		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
5CDS-intron	ENST00000374632	ENST00000477968		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
intron-3CDS	ENST00000374627	ENST00000372009		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
intron-3CDS	ENST00000374627	ENST00000361297		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
intron-intron	ENST00000374627	ENST00000477968		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
intron-3CDS	ENST00000465676	ENST00000372009		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
intron-3CDS	ENST00000465676	ENST00000361297		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
intron-intron	ENST00000465676	ENST00000477968		TCGA	LD	OV	TCGA-29-A5NZ-01A	EPHB2	chr1	23037536	+	MAST2	chr1	46468477	+
5UTR-intron	ENST00000443950	ENST00000486187		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000443950	ENST00000359467		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000544000	ENST00000486187		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000544000	ENST00000359467		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000357065	ENST00000486187		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000357065	ENST00000359467		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000356053	ENST00000486187		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000356053	ENST00000359467		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000337970	ENST00000486187		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000337970	ENST00000359467		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000498176	ENST00000486187		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5UTR-intron	ENST00000498176	ENST00000359467		TCGA	LD	OV	TCGA-29-A5NZ-01A	HNRNPF	chr10	43891904	-	ZNF33B	chr10	43127887	-
5CDS-5UTR	ENST00000367187	ENST00000359470		TCGA	LD	OV	TCGA-29-A5NZ-01A	PIK3C2B	chr1	204433140	-	C1orf116	chr1	207201024	-
5CDS-intron	ENST00000367187	ENST00000461135		TCGA	LD	OV	TCGA-29-A5NZ-01A	PIK3C2B	chr1	204433140	-	C1orf116	chr1	207201024	-
5CDS-5UTR	ENST00000424712	ENST00000359470		TCGA	LD	OV	TCGA-29-A5NZ-01A	PIK3C2B	chr1	204433140	-	C1orf116	chr1	207201024	-
5CDS-intron	ENST00000424712	ENST00000461135		TCGA	LD	OV	TCGA-29-A5NZ-01A	PIK3C2B	chr1	204433140	-	C1orf116	chr1	207201024	-
intron-5UTR	ENST00000496872	ENST00000359470		TCGA	LD	OV	TCGA-29-A5NZ-01A	PIK3C2B	chr1	204433140	-	C1orf116	chr1	207201024	-
intron-intron	ENST00000496872	ENST00000461135		TCGA	LD	OV	TCGA-29-A5NZ-01A	PIK3C2B	chr1	204433140	-	C1orf116	chr1	207201024	-
5CDS-intron	ENST00000437398	ENST00000541156		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000437398	ENST00000357137		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000437398	ENST00000544094		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000437398	ENST00000414396		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000437398	ENST00000482652		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000314328	ENST00000541156		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000314328	ENST00000357137		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000314328	ENST00000544094		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000314328	ENST00000414396		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000314328	ENST00000482652		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000541492	ENST00000541156		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000541492	ENST00000357137		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000541492	ENST00000544094		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000541492	ENST00000414396		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
5CDS-intron	ENST00000541492	ENST00000482652		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
3UTR-intron	ENST00000416735	ENST00000541156		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
3UTR-intron	ENST00000416735	ENST00000357137		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
3UTR-intron	ENST00000416735	ENST00000544094		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
3UTR-intron	ENST00000416735	ENST00000414396		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
3UTR-intron	ENST00000416735	ENST00000482652		TCGA	LD	OV	TCGA-29-A5NZ-01A	SPECC1L	chr22	24709434	+	XPNPEP3	chr22	41318337	+
intron-3CDS	ENST00000263640	ENST00000263863		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000263640	ENST00000524600		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000263640	ENST00000533041		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000263640	ENST00000409696		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000409283	ENST00000263863		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000409283	ENST00000524600		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000409283	ENST00000533041		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000409283	ENST00000409696		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
5UTR-3CDS	ENST00000434821	ENST00000263863		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
5UTR-3CDS	ENST00000434821	ENST00000524600		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
5UTR-3UTR	ENST00000434821	ENST00000533041		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
5UTR-3UTR	ENST00000434821	ENST00000409696		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000410057	ENST00000263863		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000410057	ENST00000524600		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000410057	ENST00000533041		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000410057	ENST00000409696		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000487456	ENST00000263863		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3CDS	ENST00000487456	ENST00000524600		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000487456	ENST00000533041		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
intron-3UTR	ENST00000487456	ENST00000409696		TCGA	LD	OV	TCGA-30-1714-01A	ACVR1	chr2	158732308	-	GNLY	chr2	85922443	+
In-frame	ENST00000369878	ENST00000371464		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000369878	ENST00000371467		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000369878	ENST00000371469		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000433628	ENST00000371464		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000433628	ENST00000371467		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000433628	ENST00000371469		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000369875	ENST00000371464		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000369875	ENST00000371467		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
In-frame	ENST00000369875	ENST00000371469		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
intron-3CDS	ENST00000475511	ENST00000371464		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
intron-3CDS	ENST00000475511	ENST00000371467		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
intron-3CDS	ENST00000475511	ENST00000371469		TCGA	LD	OV	TCGA-30-1714-01A	CNNM2	chr10	104679858	+	RBP4	chr10	95353792	-
5CDS-intron	ENST00000368301	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368301	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000361308	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000347559	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368300	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
5CDS-intron	ENST00000368299	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000448611	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000368297	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000473598	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000392353	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000368433		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000315144		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000368432		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000368431		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000292180		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000487371		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000405236		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000295530		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
intron-intron	ENST00000496738	ENST00000368428		TCGA	LD	OV	TCGA-30-1714-01A	LMNA	chr1	156085065	+	FLAD1	chr1	154965189	+
Frame-shit	ENST00000369291	ENST00000362074		TCGA	LD	OV	TCGA-30-1714-01A	RNF115	chr1	145650540	-	NOTCH2NL	chr1	145281369	-
Frame-shit	ENST00000369291	ENST00000344859		TCGA	LD	OV	TCGA-30-1714-01A	RNF115	chr1	145650540	-	NOTCH2NL	chr1	145281369	-
Frame-shit	ENST00000369291	ENST00000369340		TCGA	LD	OV	TCGA-30-1714-01A	RNF115	chr1	145650540	-	NOTCH2NL	chr1	145281369	-
5CDS-intron	ENST00000369291	ENST00000479995		TCGA	LD	OV	TCGA-30-1714-01A	RNF115	chr1	145650540	-	NOTCH2NL	chr1	145281369	-
5UTR-3CDS	ENST00000444631	ENST00000262033		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5UTR-5UTR	ENST00000444631	ENST00000537473		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5UTR-5UTR	ENST00000444631	ENST00000414274		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5UTR-intron	ENST00000444631	ENST00000436399		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5UTR-intron	ENST00000444631	ENST00000448157		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5UTR-intron	ENST00000444631	ENST00000456859		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
In-frame	ENST00000336133	ENST00000262033		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-5UTR	ENST00000336133	ENST00000537473		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-5UTR	ENST00000336133	ENST00000414274		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-intron	ENST00000336133	ENST00000436399		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-intron	ENST00000336133	ENST00000448157		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-intron	ENST00000336133	ENST00000456859		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
In-frame	ENST00000552080	ENST00000262033		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-5UTR	ENST00000552080	ENST00000537473		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-5UTR	ENST00000552080	ENST00000414274		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-intron	ENST00000552080	ENST00000436399		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-intron	ENST00000552080	ENST00000448157		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
5CDS-intron	ENST00000552080	ENST00000456859		TCGA	LD	OV	TCGA-30-1714-01A	SARNP	chr12	56211450	-	PTGES3	chr12	57065631	-
In-frame	ENST00000437398	ENST00000360469		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
In-frame	ENST00000437398	ENST00000543233		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
In-frame	ENST00000314328	ENST00000360469		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
In-frame	ENST00000314328	ENST00000543233		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
In-frame	ENST00000541492	ENST00000360469		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
In-frame	ENST00000541492	ENST00000543233		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
intron-3CDS	ENST00000416735	ENST00000360469		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
intron-3CDS	ENST00000416735	ENST00000543233		TCGA	LD	OV	TCGA-30-1714-01A	SPECC1L	chr22	24765288	+	CDH4	chr20	60427810	+
5UTR-intron	ENST00000438331	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000438331	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000372231	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000372231	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000360615	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000360615	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000265447	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000265447	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000422982	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000422982	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
intron-intron	ENST00000535999	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
intron-intron	ENST00000535999	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000537102	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000537102	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000463657	ENST00000485270		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
5UTR-intron	ENST00000463657	ENST00000372213		TCGA	LD	OV	TCGA-30-1718-01A	ANXA11	chr10	81965099	-	MAT1A	chr10	82049434	-
In-frame	ENST00000374379	ENST00000343815		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
In-frame	ENST00000374379	ENST00000428931		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
In-frame	ENST00000374379	ENST00000271877		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
In-frame	ENST00000374379	ENST00000361546		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
5CDS-intron	ENST00000374379	ENST00000484819		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
3UTR-3CDS	ENST00000497755	ENST00000343815		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
3UTR-3CDS	ENST00000497755	ENST00000428931		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
3UTR-3CDS	ENST00000497755	ENST00000271877		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
3UTR-3CDS	ENST00000497755	ENST00000361546		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
3UTR-intron	ENST00000497755	ENST00000484819		TCGA	LD	OV	TCGA-30-1718-01A	CLIC4	chr1	25072116	+	UBAP2L	chr1	154227312	+
In-frame	ENST00000324896	ENST00000265753		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000324896	ENST00000353999		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
5CDS-3UTR	ENST00000324896	ENST00000495187		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000353920	ENST00000265753		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000353920	ENST00000353999		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
5CDS-3UTR	ENST00000353920	ENST00000495187		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000346152	ENST00000265753		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000346152	ENST00000353999		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
5CDS-3UTR	ENST00000346152	ENST00000495187		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000416070	ENST00000265753		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
In-frame	ENST00000416070	ENST00000353999		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
5CDS-3UTR	ENST00000416070	ENST00000495187		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
Frame-shit	ENST00000443166	ENST00000265753		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
Frame-shit	ENST00000443166	ENST00000353999		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
5CDS-3UTR	ENST00000443166	ENST00000495187		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
intron-3CDS	ENST00000438130	ENST00000265753		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
intron-3CDS	ENST00000438130	ENST00000353999		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
intron-3UTR	ENST00000438130	ENST00000495187		TCGA	LD	OV	TCGA-30-1718-01A	GTF2I	chr7	74131270	+	EIF4H	chr7	73604003	+
5CDS-5UTR	ENST00000373548	ENST00000336890		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000373548	ENST00000333070		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000373548	ENST00000373564		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
5UTR-5UTR	ENST00000373541	ENST00000336890		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
5UTR-5UTR	ENST00000373541	ENST00000333070		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
5UTR-5UTR	ENST00000373541	ENST00000373564		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
intron-5UTR	ENST00000490081	ENST00000336890		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
intron-5UTR	ENST00000490081	ENST00000333070		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
intron-5UTR	ENST00000490081	ENST00000373564		TCGA	LD	OV	TCGA-30-1718-01A	HDAC1	chr1	32782383	+	LCK	chr1	32739926	+
Frame-shit	ENST00000397910	ENST00000254323		TCGA	LD	OV	TCGA-30-1718-01A	MUC16	chr19	9012774	-	ZSWIM4	chr19	13936364	+
Frame-shit	ENST00000397910	ENST00000440752		TCGA	LD	OV	TCGA-30-1718-01A	MUC16	chr19	9012774	-	ZSWIM4	chr19	13936364	+
intron-3CDS	ENST00000380951	ENST00000254323		TCGA	LD	OV	TCGA-30-1718-01A	MUC16	chr19	9012774	-	ZSWIM4	chr19	13936364	+
intron-3CDS	ENST00000380951	ENST00000440752		TCGA	LD	OV	TCGA-30-1718-01A	MUC16	chr19	9012774	-	ZSWIM4	chr19	13936364	+
intron-3CDS	ENST00000596956	ENST00000254323		TCGA	LD	OV	TCGA-30-1718-01A	MUC16	chr19	9012774	-	ZSWIM4	chr19	13936364	+
intron-3CDS	ENST00000596956	ENST00000440752		TCGA	LD	OV	TCGA-30-1718-01A	MUC16	chr19	9012774	-	ZSWIM4	chr19	13936364	+
In-frame	ENST00000261427	ENST00000273920		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
In-frame	ENST00000261427	ENST00000509635		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
intron-3CDS	ENST00000295963	ENST00000273920		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
intron-3CDS	ENST00000295963	ENST00000509635		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
3UTR-3CDS	ENST00000438068	ENST00000273920		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
3UTR-3CDS	ENST00000438068	ENST00000509635		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
In-frame	ENST00000503368	ENST00000273920		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
In-frame	ENST00000503368	ENST00000509635		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
In-frame	ENST00000445950	ENST00000273920		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
In-frame	ENST00000445950	ENST00000509635		TCGA	LD	OV	TCGA-30-1718-01A	UBE2K	chr4	39757359	+	ENOPH1	chr4	83375875	+
Frame-shit	ENST00000400000	ENST00000376238		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000400000	ENST00000537648		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000400000	ENST00000495823		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
Frame-shit	ENST00000340541	ENST00000376238		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000340541	ENST00000537648		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
5CDS-5UTR	ENST00000340541	ENST00000495823		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
intron-3CDS	ENST00000584796	ENST00000376238		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000584796	ENST00000537648		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
intron-5UTR	ENST00000584796	ENST00000495823		TCGA	LD	OV	TCGA-30-1718-01A	VAPA	chr18	9914332	+	SLC28A3	chr9	86928369	-
Frame-shit	ENST00000262370	ENST00000416426		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000262370	ENST00000284073		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000262370	ENST00000322684		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000262370	ENST00000442934		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000262370	ENST00000579180		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000262370	ENST00000579505		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000415496	ENST00000416426		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000415496	ENST00000284073		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000415496	ENST00000322684		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000415496	ENST00000442934		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000415496	ENST00000579180		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000415496	ENST00000579505		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000399577	ENST00000416426		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000399577	ENST00000284073		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000399577	ENST00000322684		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000399577	ENST00000442934		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000399577	ENST00000579180		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000399577	ENST00000579505		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000588994	ENST00000416426		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000588994	ENST00000284073		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000588994	ENST00000322684		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000588994	ENST00000442934		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000588994	ENST00000579180		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000588994	ENST00000579505		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000586183	ENST00000416426		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
Frame-shit	ENST00000586183	ENST00000284073		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000586183	ENST00000322684		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000586183	ENST00000442934		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000586183	ENST00000579180		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
5CDS-intron	ENST00000586183	ENST00000579505		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-3CDS	ENST00000588015	ENST00000416426		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-3CDS	ENST00000588015	ENST00000284073		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-intron	ENST00000588015	ENST00000322684		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-intron	ENST00000588015	ENST00000442934		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-intron	ENST00000588015	ENST00000579180		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-intron	ENST00000588015	ENST00000579505		TCGA	LD	OV	TCGA-30-1853-01A	MGRN1	chr16	4733933	+	MSI2	chr17	55754348	+
intron-intron	ENST00000474210	ENST00000494757		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000474210	ENST00000323571		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000474210	ENST00000585043		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000474210	ENST00000394103		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000474210	ENST00000536600		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000474210	ENST00000583130		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000394231	ENST00000494757		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000394231	ENST00000323571		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000394231	ENST00000585043		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000394231	ENST00000394103		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000394231	ENST00000536600		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000394231	ENST00000583130		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000577810	ENST00000494757		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000577810	ENST00000323571		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000577810	ENST00000585043		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000577810	ENST00000394103		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000577810	ENST00000536600		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000577810	ENST00000583130		TCGA	LD	OV	TCGA-30-1853-01A	MIEN1	chr17	37886447	-	WIPF2	chr17	38412643	+
Frame-shit	ENST00000351904	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000351904	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000351904	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000351904	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000351904	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000351904	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000351904	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000245541	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000245541	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000245541	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000245541	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000245541	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000245541	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000245541	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000578348	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000578348	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000578348	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000578348	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000578348	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000578348	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000578348	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000582486	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000582486	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000582486	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582486	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582486	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582486	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582486	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-3CDS	ENST00000538886	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-3CDS	ENST00000538886	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-3CDS	ENST00000538886	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-intron	ENST00000538886	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-intron	ENST00000538886	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-intron	ENST00000538886	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5UTR-intron	ENST00000538886	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000582717	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000582717	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000582717	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582717	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582717	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582717	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000582717	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000537686	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000537686	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
Frame-shit	ENST00000537686	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000537686	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000537686	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000537686	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
5CDS-intron	ENST00000537686	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000579743	ENST00000245544		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000579743	ENST00000541827		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000579743	ENST00000579324		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000579743	ENST00000449421		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000579743	ENST00000579298		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000579743	ENST00000447371		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-intron	ENST00000579743	ENST00000540768		TCGA	LD	OV	TCGA-30-1855-01A	GGA3	chr17	73257629	-	NUP85	chr17	73230732	+
intron-3CDS	ENST00000492698	ENST00000261811		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000492698	ENST00000509789		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
In-frame	ENST00000252999	ENST00000261811		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
5CDS-3UTR	ENST00000252999	ENST00000509789		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000370692	ENST00000261811		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000370692	ENST00000509789		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
intron-3CDS	ENST00000370677	ENST00000261811		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
intron-3UTR	ENST00000370677	ENST00000509789		TCGA	LD	OV	TCGA-30-1857-01A	LAMA5	chr20	60904194	-	CYSTM1	chr5	139622890	+
5UTR-3CDS	ENST00000396000	ENST00000348657		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-3CDS	ENST00000396000	ENST00000252115		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-intron	ENST00000396000	ENST00000339677		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-intron	ENST00000396000	ENST00000451060		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-5UTR	ENST00000396000	ENST00000491021		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-3CDS	ENST00000262735	ENST00000348657		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-3CDS	ENST00000262735	ENST00000252115		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-intron	ENST00000262735	ENST00000339677		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-intron	ENST00000262735	ENST00000451060		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-5UTR	ENST00000262735	ENST00000491021		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-3CDS	ENST00000407236	ENST00000348657		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-3CDS	ENST00000407236	ENST00000252115		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-intron	ENST00000407236	ENST00000339677		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-intron	ENST00000407236	ENST00000451060		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
5UTR-5UTR	ENST00000407236	ENST00000491021		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000481567	ENST00000348657		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000481567	ENST00000252115		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000481567	ENST00000339677		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000481567	ENST00000451060		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-5UTR	ENST00000481567	ENST00000491021		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000402126	ENST00000348657		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000402126	ENST00000252115		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000402126	ENST00000339677		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000402126	ENST00000451060		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-5UTR	ENST00000402126	ENST00000491021		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000434345	ENST00000348657		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-3CDS	ENST00000434345	ENST00000252115		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000434345	ENST00000339677		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-intron	ENST00000434345	ENST00000451060		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
intron-5UTR	ENST00000434345	ENST00000491021		TCGA	LD	OV	TCGA-30-1857-01A	PPARA	chr22	46547873	+	POLDIP3	chr22	42983578	-
3UTR-3CDS	ENST00000395738	ENST00000359139		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
3UTR-3CDS	ENST00000395738	ENST00000395741		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
3UTR-3CDS	ENST00000395738	ENST00000395744		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
3UTR-3CDS	ENST00000395738	ENST00000216061		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
In-frame	ENST00000362068	ENST00000359139		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
In-frame	ENST00000362068	ENST00000395741		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
In-frame	ENST00000362068	ENST00000395744		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
In-frame	ENST00000362068	ENST00000216061		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
intron-3CDS	ENST00000395737	ENST00000359139		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
intron-3CDS	ENST00000395737	ENST00000395741		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
intron-3CDS	ENST00000395737	ENST00000395744		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
intron-3CDS	ENST00000395737	ENST00000216061		TCGA	LD	OV	TCGA-30-1860-01A	ADM2	chr22	50921509	+	PPP6R2	chr22	50882295	+
5CDS-5UTR	ENST00000373344	ENST00000373304		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
5CDS-intron	ENST00000373344	ENST00000493254		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
5CDS-5UTR	ENST00000395603	ENST00000373304		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
5CDS-intron	ENST00000395603	ENST00000493254		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
5UTR-5UTR	ENST00000480283	ENST00000373304		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
5UTR-intron	ENST00000480283	ENST00000493254		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
intron-5UTR	ENST00000373341	ENST00000373304		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
intron-intron	ENST00000373341	ENST00000493254		TCGA	LD	OV	TCGA-30-1860-01A	ATRX	chrX	77041468	-	CYSLTR1	chrX	77539037	-
Frame-shit	ENST00000538689	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000220584	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
3UTR-3CDS	ENST00000446331	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
In-frame	ENST00000443614	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000525900	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
In-frame	ENST00000528812	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
In-frame	ENST00000530664	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000528643	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000525777	ENST00000382208		TCGA	LD	OV	TCGA-30-1860-01A	FDFT1	chr8	11696082	+	DEFB135	chr8	11841930	+
5CDS-3UTR	ENST00000262593	ENST00000371497		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000262593	ENST00000603338		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000262593	ENST00000329613		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000395939	ENST00000371497		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
intron-3UTR	ENST00000395939	ENST00000603338		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
intron-intron	ENST00000395939	ENST00000329613		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000491469	ENST00000371497		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
3UTR-3UTR	ENST00000491469	ENST00000603338		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
3UTR-intron	ENST00000491469	ENST00000329613		TCGA	LD	OV	TCGA-30-1861-01A	DOK5	chr20	53092551	+	TSHZ2	chr20	52103683	+
5UTR-5UTR	ENST00000237163	ENST00000608353		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000237163	ENST00000392863		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000237163	ENST00000229570		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000237163	ENST00000608525		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000237163	ENST00000608868		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000349129	ENST00000608353		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000349129	ENST00000392863		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000349129	ENST00000229570		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000349129	ENST00000608525		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000349129	ENST00000608868		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000536812	ENST00000608353		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000536812	ENST00000392863		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000536812	ENST00000229570		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000536812	ENST00000608525		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
5UTR-5UTR	ENST00000536812	ENST00000608868		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000369739	ENST00000608353		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000369739	ENST00000392863		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000369739	ENST00000229570		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000369739	ENST00000608525		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000369739	ENST00000608868		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000484282	ENST00000608353		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000484282	ENST00000392863		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000484282	ENST00000229570		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000484282	ENST00000608525		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
intron-5UTR	ENST00000484282	ENST00000608868		TCGA	LD	OV	TCGA-30-1861-01A	DOPEY1	chr6	83777498	+	SMIM8	chr6	88046727	+
Frame-shit	ENST00000335255	ENST00000389413		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000335255	ENST00000409483		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000335255	ENST00000389416		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000335255	ENST00000389418		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
Frame-shit	ENST00000335255	ENST00000404321		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000529652	ENST00000389413		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000529652	ENST00000409483		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000529652	ENST00000389416		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000529652	ENST00000389418		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
intron-3CDS	ENST00000529652	ENST00000404321		TCGA	LD	OV	TCGA-30-1861-01A	FOXK2	chr17	80478183	+	PTPRN2	chr7	157691429	-
In-frame	ENST00000331134	ENST00000337014		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
In-frame	ENST00000331134	ENST00000577944		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
In-frame	ENST00000331134	ENST00000327949		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
In-frame	ENST00000374747	ENST00000337014		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
In-frame	ENST00000374747	ENST00000577944		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
In-frame	ENST00000374747	ENST00000327949		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
5UTR-3CDS	ENST00000539314	ENST00000337014		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
5UTR-3CDS	ENST00000539314	ENST00000577944		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
5UTR-3CDS	ENST00000539314	ENST00000327949		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000572760	ENST00000337014		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000572760	ENST00000577944		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000572760	ENST00000327949		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000573876	ENST00000337014		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000573876	ENST00000577944		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000573876	ENST00000327949		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000574344	ENST00000337014		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000574344	ENST00000577944		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
intron-3CDS	ENST00000574344	ENST00000327949		TCGA	LD	OV	TCGA-30-1861-01A	NPLOC4	chr17	79589192	-	HEXDC	chr17	80386434	+
Frame-shit	ENST00000409792	ENST00000258383		TCGA	LD	OV	TCGA-30-1861-01A	SETD2	chr3	47205344	-	MRPL44	chr2	224824251	+
intron-3CDS	ENST00000492397	ENST00000258383		TCGA	LD	OV	TCGA-30-1861-01A	SETD2	chr3	47205344	-	MRPL44	chr2	224824251	+
Frame-shit	ENST00000212355	ENST00000273286		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000212355	ENST00000493075		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
Frame-shit	ENST00000370399	ENST00000273286		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000370399	ENST00000493075		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
In-frame	ENST00000525962	ENST00000273286		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000525962	ENST00000493075		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
intron-3CDS	ENST00000468996	ENST00000273286		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
intron-5UTR	ENST00000468996	ENST00000493075		TCGA	LD	OV	TCGA-30-1861-01A	TGFBR3	chr1	92174220	-	LRTM1	chr3	54959242	-
In-frame	ENST00000324856	ENST00000373954		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000324856	ENST00000419687		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000324856	ENST00000530324		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000324856	ENST00000234549		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000324856	ENST00000373949		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000324856	ENST00000010299		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000457599	ENST00000373954		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000457599	ENST00000419687		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000457599	ENST00000530324		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000457599	ENST00000234549		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000457599	ENST00000373949		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
In-frame	ENST00000457599	ENST00000010299		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000374152	ENST00000373954		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000374152	ENST00000419687		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000374152	ENST00000530324		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000374152	ENST00000234549		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000374152	ENST00000373949		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000374152	ENST00000010299		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000540690	ENST00000373954		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000540690	ENST00000419687		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000540690	ENST00000530324		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000540690	ENST00000234549		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000540690	ENST00000373949		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
intron-3CDS	ENST00000540690	ENST00000010299		TCGA	LD	OV	TCGA-30-1862-01A	ARID1A	chr1	27024031	+	FAM76A	chr1	28053983	+
Frame-shit	ENST00000295400	ENST00000037869		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000295400	ENST00000450256		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000295400	ENST00000430566		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
In-frame	ENST00000445399	ENST00000037869		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000445399	ENST00000450256		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
In-frame	ENST00000445399	ENST00000430566		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000418333	ENST00000037869		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000418333	ENST00000450256		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000418333	ENST00000430566		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000450929	ENST00000037869		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000450929	ENST00000450256		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000450929	ENST00000430566		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000444975	ENST00000037869		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000444975	ENST00000450256		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000444975	ENST00000430566		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
5UTR-3CDS	ENST00000460808	ENST00000037869		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
5UTR-3CDS	ENST00000460808	ENST00000450256		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
5UTR-3CDS	ENST00000460808	ENST00000430566		TCGA	LD	OV	TCGA-30-1862-01A	TGFA	chr2	70741991	-	FAM136A	chr2	70528112	-
Frame-shit	ENST00000288266	ENST00000478253		TCGA	LD	OV	TCGA-30-1866-01A	APPL1	chr3	57294802	+	ABHD6	chr3	58279316	+
In-frame	ENST00000288266	ENST00000295962		TCGA	LD	OV	TCGA-30-1866-01A	APPL1	chr3	57294802	+	ABHD6	chr3	58279316	+
5CDS-intron	ENST00000288266	ENST00000480457		TCGA	LD	OV	TCGA-30-1866-01A	APPL1	chr3	57294802	+	ABHD6	chr3	58279316	+
5UTR-3CDS	ENST00000248378	ENST00000358777		TCGA	LD	OV	TCGA-30-1866-01A	EMC6	chr17	3572193	+	CEACAM19	chr19	45185839	+
5UTR-3CDS	ENST00000248378	ENST00000403660		TCGA	LD	OV	TCGA-30-1866-01A	EMC6	chr17	3572193	+	CEACAM19	chr19	45185839	+
5UTR-3UTR	ENST00000248378	ENST00000480278		TCGA	LD	OV	TCGA-30-1866-01A	EMC6	chr17	3572193	+	CEACAM19	chr19	45185839	+
5UTR-3CDS	ENST00000397133	ENST00000358777		TCGA	LD	OV	TCGA-30-1866-01A	EMC6	chr17	3572193	+	CEACAM19	chr19	45185839	+
5UTR-3CDS	ENST00000397133	ENST00000403660		TCGA	LD	OV	TCGA-30-1866-01A	EMC6	chr17	3572193	+	CEACAM19	chr19	45185839	+
5UTR-3UTR	ENST00000397133	ENST00000480278		TCGA	LD	OV	TCGA-30-1866-01A	EMC6	chr17	3572193	+	CEACAM19	chr19	45185839	+
intron-3CDS	ENST00000397910	ENST00000305444		TCGA	LD	OV	TCGA-30-1866-01A	MUC16	chr19	9072668	-	OR7G3	chr19	9237571	-
intron-3CDS	ENST00000380951	ENST00000305444		TCGA	LD	OV	TCGA-30-1866-01A	MUC16	chr19	9072668	-	OR7G3	chr19	9237571	-
intron-3CDS	ENST00000596956	ENST00000305444		TCGA	LD	OV	TCGA-30-1866-01A	MUC16	chr19	9072668	-	OR7G3	chr19	9237571	-
5CDS-3UTR	ENST00000216484	ENST00000554438		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
5CDS-3UTR	ENST00000216484	ENST00000245448		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
5CDS-3UTR	ENST00000216484	ENST00000426751		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
5CDS-3UTR	ENST00000216484	ENST00000311459		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
5CDS-3UTR	ENST00000216484	ENST00000358473		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
intron-3UTR	ENST00000556264	ENST00000554438		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
intron-3UTR	ENST00000556264	ENST00000245448		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
intron-3UTR	ENST00000556264	ENST00000426751		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
intron-3UTR	ENST00000556264	ENST00000311459		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
intron-3UTR	ENST00000556264	ENST00000358473		TCGA	LD	OV	TCGA-30-1866-01A	SPTLC2	chr14	78036727	-	ATP5S	chr14	50789229	+
Frame-shit	ENST00000586748	ENST00000354429		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000586748	ENST00000574255		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000586748	ENST00000356683		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000586748	ENST00000396627		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000586748	ENST00000574993		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000586748	ENST00000396628		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000586748	ENST00000573657		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
Frame-shit	ENST00000253031	ENST00000354429		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000253031	ENST00000574255		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000253031	ENST00000356683		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000253031	ENST00000396627		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000253031	ENST00000574993		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000253031	ENST00000396628		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000253031	ENST00000573657		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
Frame-shit	ENST00000590329	ENST00000354429		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000590329	ENST00000574255		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000590329	ENST00000356683		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000590329	ENST00000396627		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000590329	ENST00000574993		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000590329	ENST00000396628		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
5CDS-intron	ENST00000590329	ENST00000573657		TCGA	LD	OV	TCGA-30-1866-01A	YIPF2	chr19	11036362	-	ELP5	chr17	7160176	+
Frame-shit	ENST00000372572	ENST00000371084		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000372572	ENST00000540265		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000372572	ENST00000371083		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-intron	ENST00000372572	ENST00000483707		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
Frame-shit	ENST00000372573	ENST00000371084		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000372573	ENST00000540265		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000372573	ENST00000371083		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-intron	ENST00000372573	ENST00000483707		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
Frame-shit	ENST00000361346	ENST00000371084		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000361346	ENST00000540265		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000361346	ENST00000371083		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-intron	ENST00000361346	ENST00000483707		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
Frame-shit	ENST00000361776	ENST00000371084		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000361776	ENST00000540265		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000361776	ENST00000371083		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-intron	ENST00000361776	ENST00000483707		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
Frame-shit	ENST00000545068	ENST00000371084		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000545068	ENST00000540265		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-5UTR	ENST00000545068	ENST00000371083		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
5CDS-intron	ENST00000545068	ENST00000483707		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
intron-3CDS	ENST00000372571	ENST00000371084		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
intron-5UTR	ENST00000372571	ENST00000540265		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
intron-5UTR	ENST00000372571	ENST00000371083		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
intron-intron	ENST00000372571	ENST00000483707		TCGA	LD	OV	TCGA-30-1891-01A	FOXJ3	chr1	42664773	-	PGM1	chr1	64095096	+
Frame-shit	ENST00000520539	ENST00000383699		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000520539	ENST00000407528		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000520539	ENST00000405615		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
5CDS-intron	ENST00000520539	ENST00000485126		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000220959	ENST00000383699		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000220959	ENST00000407528		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000220959	ENST00000405615		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
5CDS-intron	ENST00000220959	ENST00000485126		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-3CDS	ENST00000518205	ENST00000383699		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-3CDS	ENST00000518205	ENST00000407528		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-3CDS	ENST00000518205	ENST00000405615		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-intron	ENST00000518205	ENST00000485126		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000521922	ENST00000383699		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000521922	ENST00000407528		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
Frame-shit	ENST00000521922	ENST00000405615		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
5CDS-intron	ENST00000521922	ENST00000485126		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-3CDS	ENST00000519528	ENST00000383699		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-3CDS	ENST00000519528	ENST00000407528		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-3CDS	ENST00000519528	ENST00000405615		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
intron-intron	ENST00000519528	ENST00000485126		TCGA	LD	OV	TCGA-31-1944-01A	UBR5	chr8	103424401	-	CADM2	chr3	85932441	+
5UTR-3CDS	ENST00000263640	ENST00000253506		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000591814		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000397790		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000587635		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000427363		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000542384		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000318065		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000545796		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000592223		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000329101		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000586434		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000263640	ENST00000590172		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-3CDS	ENST00000409283	ENST00000253506		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000591814		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000397790		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000587635		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000427363		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000542384		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000318065		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000545796		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000592223		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000329101		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000586434		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000409283	ENST00000590172		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-3CDS	ENST00000434821	ENST00000253506		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000591814		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000397790		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000587635		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000427363		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000542384		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000318065		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000545796		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000592223		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000329101		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000586434		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000434821	ENST00000590172		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-3CDS	ENST00000410057	ENST00000253506		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000591814		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000397790		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000587635		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000427363		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000542384		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000318065		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000545796		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000592223		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000329101		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000586434		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
5UTR-intron	ENST00000410057	ENST00000590172		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-3CDS	ENST00000487456	ENST00000253506		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000591814		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000397790		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000587635		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000427363		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000542384		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000318065		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000545796		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000592223		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000329101		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000586434		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-intron	ENST00000487456	ENST00000590172		TCGA	LD	OV	TCGA-31-1946-01A	ACVR1	chr2	158674897	-	NFATC1	chr18	77246248	+
intron-3CDS	ENST00000369788	ENST00000329905		TCGA	LD	OV	TCGA-31-1946-01A	CALHM2	chr10	105206905	-	CALHM1	chr10	105215504	-
intron-3CDS	ENST00000260743	ENST00000329905		TCGA	LD	OV	TCGA-31-1946-01A	CALHM2	chr10	105206905	-	CALHM1	chr10	105215504	-
intron-3CDS	ENST00000393235	ENST00000329905		TCGA	LD	OV	TCGA-31-1946-01A	CALHM2	chr10	105206905	-	CALHM1	chr10	105215504	-
intron-3CDS	ENST00000494180	ENST00000329905		TCGA	LD	OV	TCGA-31-1946-01A	CALHM2	chr10	105206905	-	CALHM1	chr10	105215504	-
5CDS-intron	ENST00000544484	ENST00000523102		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000544484	ENST00000524270		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000544484	ENST00000519357		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000544484	ENST00000437851		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000357008	ENST00000523102		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000357008	ENST00000524270		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000357008	ENST00000519357		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000357008	ENST00000437851		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000309577	ENST00000523102		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000309577	ENST00000524270		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000309577	ENST00000519357		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000309577	ENST00000437851		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000544040	ENST00000523102		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000544040	ENST00000524270		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000544040	ENST00000519357		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000544040	ENST00000437851		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000540960	ENST00000523102		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000540960	ENST00000524270		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000540960	ENST00000519357		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000540960	ENST00000437851		TCGA	LD	OV	TCGA-31-1946-01A	CHD4	chr12	6715440	-	SPSB2	chr12	6991451	-
5UTR-3CDS	ENST00000339438	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000339438	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000339438	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000339438	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000339438	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000339438	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000438362	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000438362	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000438362	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000438362	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000438362	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000438362	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000358528	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000358528	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000358528	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000358528	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000358528	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000358528	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000261443	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000261443	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000261443	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000261443	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000261443	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000261443	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000530886	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000530886	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000530886	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000530886	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000530886	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000530886	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000369530	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000369530	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000369530	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000369530	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-3CDS	ENST00000369530	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
5UTR-intron	ENST00000369530	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000483407	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000483407	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000483407	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000483407	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000483407	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000483407	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000534699	ENST00000550418		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000534699	ENST00000553186		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000534699	ENST00000547372		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000534699	ENST00000422070		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000534699	ENST00000535565		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000547427		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000552089		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000547338		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000436368		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000311745		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000355637		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000534699	ENST00000340209		TCGA	LD	OV	TCGA-31-1946-01A	CSDE1	chr1	115292442	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000324344	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	DCUN1D3	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000324344	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	DCUN1D3	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000324344	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	DCUN1D3	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000563934	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	DCUN1D3	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000563934	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	DCUN1D3	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000563934	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	DCUN1D3	chr16	20907630	-	DNAH3	chr16	20955985	-
5UTR-3CDS	ENST00000564349	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
5UTR-3UTR	ENST00000564349	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
5UTR-intron	ENST00000564349	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000300005	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000300005	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000300005	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000357967	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000357967	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000357967	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000569729	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000569729	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000569729	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000389345	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000389345	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000389345	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000563117	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000563117	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000563117	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3CDS	ENST00000568251	ENST00000261383		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-3UTR	ENST00000568251	ENST00000415178		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
intron-intron	ENST00000568251	ENST00000575491		TCGA	LD	OV	TCGA-31-1946-01A	ERI2	chr16	20907630	-	DNAH3	chr16	20955985	-
5UTR-3CDS	ENST00000254301	ENST00000342376		TCGA	LD	OV	TCGA-31-1946-01A	LGALS3	chr14	55596018	+	KIR2DL3	chr19	55253426	+
5UTR-3CDS	ENST00000254301	ENST00000434419		TCGA	LD	OV	TCGA-31-1946-01A	LGALS3	chr14	55596018	+	KIR2DL3	chr19	55253426	+
3UTR-3CDS	ENST00000553755	ENST00000342376		TCGA	LD	OV	TCGA-31-1946-01A	LGALS3	chr14	55596018	+	KIR2DL3	chr19	55253426	+
3UTR-3CDS	ENST00000553755	ENST00000434419		TCGA	LD	OV	TCGA-31-1946-01A	LGALS3	chr14	55596018	+	KIR2DL3	chr19	55253426	+
5UTR-3CDS	ENST00000554715	ENST00000342376		TCGA	LD	OV	TCGA-31-1946-01A	LGALS3	chr14	55596018	+	KIR2DL3	chr19	55253426	+
5UTR-3CDS	ENST00000554715	ENST00000434419		TCGA	LD	OV	TCGA-31-1946-01A	LGALS3	chr14	55596018	+	KIR2DL3	chr19	55253426	+
5UTR-intron	ENST00000402881	ENST00000216160		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-intron	ENST00000402881	ENST00000331454		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-3UTR	ENST00000402881	ENST00000488859		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5CDS-intron	ENST00000478342	ENST00000216160		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5CDS-intron	ENST00000478342	ENST00000331454		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5CDS-3UTR	ENST00000478342	ENST00000488859		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-intron	ENST00000325301	ENST00000216160		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-intron	ENST00000325301	ENST00000331454		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-3UTR	ENST00000325301	ENST00000488859		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-intron	ENST00000404569	ENST00000216160		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-intron	ENST00000404569	ENST00000331454		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5UTR-3UTR	ENST00000404569	ENST00000488859		TCGA	LD	OV	TCGA-31-1946-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39832495	+
5CDS-5UTR	ENST00000367278	ENST00000312828		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
5CDS-intron	ENST00000367278	ENST00000588064		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
5CDS-5UTR	ENST00000255432	ENST00000312828		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
5CDS-intron	ENST00000255432	ENST00000588064		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
5CDS-5UTR	ENST00000439764	ENST00000312828		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
5CDS-intron	ENST00000439764	ENST00000588064		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
intron-5UTR	ENST00000308543	ENST00000312828		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
intron-intron	ENST00000308543	ENST00000588064		TCGA	LD	OV	TCGA-31-1950-01A	LGR6	chr1	202205121	+	RNF152	chr18	59483831	-
In-frame	ENST00000392232	ENST00000244137		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000392232	ENST00000397032		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000392232	ENST00000436370		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
5CDS-intron	ENST00000392232	ENST00000591968		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000459757	ENST00000244137		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000459757	ENST00000397032		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000459757	ENST00000436370		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
5CDS-intron	ENST00000459757	ENST00000591968		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000492450	ENST00000244137		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000492450	ENST00000397032		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000492450	ENST00000436370		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
5CDS-intron	ENST00000492450	ENST00000591968		TCGA	LD	OV	TCGA-31-1950-01A	ZNF181	chr19	35225951	+	PEPD	chr19	33984243	-
In-frame	ENST00000455511	ENST00000286063		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
In-frame	ENST00000455511	ENST00000358450		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000455511	ENST00000450799		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000455511	ENST00000409504		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000455511	ENST00000389683		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000455511	ENST00000449286		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000455511	ENST00000497003		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000481473	ENST00000286063		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000481473	ENST00000358450		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000481473	ENST00000450799		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000481473	ENST00000409504		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000481473	ENST00000389683		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-intron	ENST00000481473	ENST00000449286		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
intron-5UTR	ENST00000481473	ENST00000497003		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
In-frame	ENST00000450008	ENST00000286063		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
In-frame	ENST00000450008	ENST00000358450		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000450008	ENST00000450799		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000450008	ENST00000409504		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000450008	ENST00000389683		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000450008	ENST00000449286		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000450008	ENST00000497003		TCGA	LD	OV	TCGA-31-1951-01A	ANAPC7	chr12	110832906	-	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000473997	ENST00000341567		TCGA	LD	OV	TCGA-31-1951-01A	CDK5RAP1	chr20	31967267	-	TMEM248	chr7	66406835	+
5CDS-5UTR	ENST00000346416	ENST00000341567		TCGA	LD	OV	TCGA-31-1951-01A	CDK5RAP1	chr20	31967267	-	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000339269	ENST00000341567		TCGA	LD	OV	TCGA-31-1951-01A	CDK5RAP1	chr20	31967267	-	TMEM248	chr7	66406835	+
5CDS-5UTR	ENST00000357886	ENST00000341567		TCGA	LD	OV	TCGA-31-1951-01A	CDK5RAP1	chr20	31967267	-	TMEM248	chr7	66406835	+
5CDS-5UTR	ENST00000544843	ENST00000341567		TCGA	LD	OV	TCGA-31-1951-01A	CDK5RAP1	chr20	31967267	-	TMEM248	chr7	66406835	+
5UTR-5UTR	ENST00000477105	ENST00000341567		TCGA	LD	OV	TCGA-31-1951-01A	CDK5RAP1	chr20	31967267	-	TMEM248	chr7	66406835	+
In-frame	ENST00000539857	ENST00000588847		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000539857	ENST00000588061		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000539857	ENST00000335749		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000539857	ENST00000301624		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000539857	ENST00000541771		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000539857	ENST00000544502		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000579016	ENST00000588847		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000579016	ENST00000588061		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000579016	ENST00000335749		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000579016	ENST00000301624		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000579016	ENST00000541771		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
In-frame	ENST00000579016	ENST00000544502		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
intron-3CDS	ENST00000584568	ENST00000588847		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
intron-3CDS	ENST00000584568	ENST00000588061		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
intron-3CDS	ENST00000584568	ENST00000335749		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
intron-3CDS	ENST00000584568	ENST00000301624		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
intron-3CDS	ENST00000584568	ENST00000541771		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
intron-3CDS	ENST00000584568	ENST00000544502		TCGA	LD	OV	TCGA-31-1951-01A	ENGASE	chr17	77076446	+	TNRC6C	chr17	76082584	+
Frame-shit	ENST00000378116	ENST00000378076		TCGA	LD	OV	TCGA-31-1951-01A	FAM171A1	chr10	15412955	-	ITGA8	chr10	15686220	-
5CDS-intron	ENST00000378116	ENST00000477064		TCGA	LD	OV	TCGA-31-1951-01A	FAM171A1	chr10	15412955	-	ITGA8	chr10	15686220	-
intron-3CDS	ENST00000477161	ENST00000378076		TCGA	LD	OV	TCGA-31-1951-01A	FAM171A1	chr10	15412955	-	ITGA8	chr10	15686220	-
intron-intron	ENST00000477161	ENST00000477064		TCGA	LD	OV	TCGA-31-1951-01A	FAM171A1	chr10	15412955	-	ITGA8	chr10	15686220	-
3UTR-3CDS	ENST00000482812	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
5UTR-3CDS	ENST00000430044	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
In-frame	ENST00000452146	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000434507	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000415421	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000320311	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000422997	ENST00000330079		TCGA	LD	OV	TCGA-31-1951-01A	GALNT11	chr7	151722969	+	ORAI1	chr12	122078947	+
Frame-shit	ENST00000421351	ENST00000322263		TCGA	LD	OV	TCGA-31-1951-01A	PERP	chr6	138428264	-	TULP1	chr6	35477705	-
Frame-shit	ENST00000421351	ENST00000229771		TCGA	LD	OV	TCGA-31-1951-01A	PERP	chr6	138428264	-	TULP1	chr6	35477705	-
Frame-shit	ENST00000461988	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
5CDS-intron	ENST00000461988	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
5UTR-3CDS	ENST00000419840	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
5UTR-intron	ENST00000419840	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
Frame-shit	ENST00000394893	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
5CDS-intron	ENST00000394893	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-3CDS	ENST00000475509	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-intron	ENST00000475509	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-3CDS	ENST00000545601	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-intron	ENST00000545601	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-3CDS	ENST00000450476	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-intron	ENST00000450476	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-3CDS	ENST00000439269	ENST00000160373		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
intron-intron	ENST00000439269	ENST00000487820		TCGA	LD	OV	TCGA-31-1951-01A	POR	chr7	75583498	+	CTTNBP2	chr7	117368321	-
Frame-shit	ENST00000584667	ENST00000167462		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
Frame-shit	ENST00000584667	ENST00000375227		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
Frame-shit	ENST00000584667	ENST00000392550		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
Frame-shit	ENST00000584667	ENST00000578363		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
Frame-shit	ENST00000584667	ENST00000577200		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
intron-3CDS	ENST00000355423	ENST00000167462		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
intron-3CDS	ENST00000355423	ENST00000375227		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
intron-3CDS	ENST00000355423	ENST00000392550		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
intron-3CDS	ENST00000355423	ENST00000578363		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
intron-3CDS	ENST00000355423	ENST00000577200		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
3UTR-3CDS	ENST00000579864	ENST00000167462		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
3UTR-3CDS	ENST00000579864	ENST00000375227		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
3UTR-3CDS	ENST00000579864	ENST00000392550		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
3UTR-3CDS	ENST00000579864	ENST00000578363		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
3UTR-3CDS	ENST00000579864	ENST00000577200		TCGA	LD	OV	TCGA-31-1951-01A	SAP30BP	chr17	73667943	+	LLGL2	chr17	73559097	+
5UTR-3CDS	ENST00000262544	ENST00000377452		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
5UTR-intron	ENST00000262544	ENST00000494921		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
intron-3CDS	ENST00000336714	ENST00000377452		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
intron-intron	ENST00000336714	ENST00000494921		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
5UTR-3CDS	ENST00000377475	ENST00000377452		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
5UTR-intron	ENST00000377475	ENST00000494921		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
intron-3CDS	ENST00000377465	ENST00000377452		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
intron-intron	ENST00000377465	ENST00000494921		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
intron-3CDS	ENST00000494645	ENST00000377452		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
intron-intron	ENST00000494645	ENST00000494921		TCGA	LD	OV	TCGA-31-1951-01A	SEC23B	chr20	18488634	+	DTD1	chr20	18724744	+
5CDS-intron	ENST00000369796	ENST00000571688		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000413364		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000339430		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000381810		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000570904		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000571459		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000572255		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000576036		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000574763		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000571976		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369796	ENST00000574703		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000571688		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000413364		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000339430		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000381810		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000570904		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000571459		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000572255		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000576036		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000574763		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000571976		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369795	ENST00000574703		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000571688		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000413364		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000339430		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000381810		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000570904		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000571459		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000572255		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000576036		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000574763		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000571976		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
5CDS-intron	ENST00000369794	ENST00000574703		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000571688		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000413364		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000339430		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000381810		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000570904		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000571459		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000572255		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000576036		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000574763		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000571976		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-intron	ENST00000461054	ENST00000574703		TCGA	LD	OV	TCGA-31-1951-01A	STRIP1	chr1	110581379	+	LITAF	chr16	11727493	-
intron-5UTR	ENST00000171887	ENST00000560829		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000171887	ENST00000353874		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000171887	ENST00000261889		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000171887	ENST00000559844		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000171887	ENST00000561026		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-intron	ENST00000171887	ENST00000559339		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000419504	ENST00000560829		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000419504	ENST00000353874		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000419504	ENST00000261889		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000419504	ENST00000559844		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000419504	ENST00000561026		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-intron	ENST00000419504	ENST00000559339		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000430930	ENST00000560829		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000430930	ENST00000353874		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000430930	ENST00000261889		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000430930	ENST00000559844		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000430930	ENST00000561026		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-intron	ENST00000430930	ENST00000559339		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000310858	ENST00000560829		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000310858	ENST00000353874		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000310858	ENST00000261889		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000310858	ENST00000559844		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000310858	ENST00000561026		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-intron	ENST00000310858	ENST00000559339		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000480665	ENST00000560829		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000480665	ENST00000353874		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000480665	ENST00000261889		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000480665	ENST00000559844		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-5UTR	ENST00000480665	ENST00000561026		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
intron-intron	ENST00000480665	ENST00000559339		TCGA	LD	OV	TCGA-31-1951-01A	TNS1	chr2	218843488	-	SNX1	chr15	64404772	+
Frame-shit	ENST00000375687	ENST00000534862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000375687	ENST00000538448		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000375687	ENST00000375862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000375687	ENST00000520553		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000375687	ENST00000518730		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000375687	ENST00000375852		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
Frame-shit	ENST00000542461	ENST00000534862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000542461	ENST00000538448		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000542461	ENST00000375862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000542461	ENST00000520553		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000542461	ENST00000518730		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000542461	ENST00000375852		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-3CDS	ENST00000375689	ENST00000534862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000375689	ENST00000538448		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000375689	ENST00000375862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000375689	ENST00000520553		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000375689	ENST00000518730		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000375689	ENST00000375852		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-3CDS	ENST00000306058	ENST00000534862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000306058	ENST00000538448		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000306058	ENST00000375862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000306058	ENST00000520553		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000306058	ENST00000518730		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000306058	ENST00000375852		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-3CDS	ENST00000470145	ENST00000534862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000470145	ENST00000538448		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000470145	ENST00000375862		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000470145	ENST00000520553		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000470145	ENST00000518730		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
intron-5UTR	ENST00000470145	ENST00000375852		TCGA	LD	OV	TCGA-31-1953-01A	ASXL1	chr20	30946635	+	HCK	chr20	30659465	+
5CDS-3UTR	ENST00000378891	ENST00000483354		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378891	ENST00000380113		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378891	ENST00000455664		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378891	ENST00000399838		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378888	ENST00000483354		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378888	ENST00000380113		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378888	ENST00000455664		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378888	ENST00000399838		TCGA	LD	OV	TCGA-31-1953-01A	DVL1	chr1	1273357	-	ITPA	chr20	3202487	+
intron-3CDS	ENST00000546296	ENST00000228799		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
intron-intron	ENST00000546296	ENST00000419778		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
intron-5UTR	ENST00000546296	ENST00000542548		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
intron-intron	ENST00000546296	ENST00000545509		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
Frame-shit	ENST00000539925	ENST00000228799		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000539925	ENST00000419778		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-5UTR	ENST00000539925	ENST00000542548		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000539925	ENST00000545509		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
Frame-shit	ENST00000228918	ENST00000228799		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000228918	ENST00000419778		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-5UTR	ENST00000228918	ENST00000542548		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000228918	ENST00000545509		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
Frame-shit	ENST00000543190	ENST00000228799		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000543190	ENST00000419778		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-5UTR	ENST00000543190	ENST00000542548		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000543190	ENST00000545509		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
Frame-shit	ENST00000541102	ENST00000228799		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000541102	ENST00000419778		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-5UTR	ENST00000541102	ENST00000542548		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5CDS-intron	ENST00000541102	ENST00000545509		TCGA	LD	OV	TCGA-31-1953-01A	LTBR	chr12	6494545	+	ITFG2	chr12	2926389	+
5UTR-3CDS	ENST00000265062	ENST00000290913		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
5UTR-3CDS	ENST00000265062	ENST00000508789		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
5UTR-intron	ENST00000265062	ENST00000515867		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
5UTR-3CDS	ENST00000482525	ENST00000290913		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
5UTR-3CDS	ENST00000482525	ENST00000508789		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
5UTR-intron	ENST00000482525	ENST00000515867		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
intron-3CDS	ENST00000485280	ENST00000290913		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
intron-3CDS	ENST00000485280	ENST00000508789		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
intron-intron	ENST00000485280	ENST00000515867		TCGA	LD	OV	TCGA-31-1953-01A	RAB7A	chr3	128445202	+	CHCHD6	chr3	126571490	+
In-frame	ENST00000393651	ENST00000356362		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
In-frame	ENST00000393651	ENST00000469408		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
intron-3CDS	ENST00000357311	ENST00000356362		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
intron-3CDS	ENST00000357311	ENST00000469408		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
intron-3CDS	ENST00000489828	ENST00000356362		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
intron-3CDS	ENST00000489828	ENST00000469408		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
intron-3CDS	ENST00000493638	ENST00000356362		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
intron-3CDS	ENST00000493638	ENST00000469408		TCGA	LD	OV	TCGA-31-1953-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105099706	-
Frame-shit	ENST00000339566	ENST00000234454		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
5CDS-intron	ENST00000339566	ENST00000498749		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
Frame-shit	ENST00000409707	ENST00000234454		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
5CDS-intron	ENST00000409707	ENST00000498749		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
Frame-shit	ENST00000394073	ENST00000234454		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
5CDS-intron	ENST00000394073	ENST00000498749		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
Frame-shit	ENST00000394070	ENST00000234454		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
5CDS-intron	ENST00000394070	ENST00000498749		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
Frame-shit	ENST00000536064	ENST00000234454		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
5CDS-intron	ENST00000536064	ENST00000498749		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
intron-3CDS	ENST00000486458	ENST00000234454		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
intron-intron	ENST00000486458	ENST00000498749		TCGA	LD	OV	TCGA-31-1953-01A	STAMBP	chr2	74058186	+	SPR	chr2	73115443	+
intron-3CDS	ENST00000539406	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000539406	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000539406	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
In-frame	ENST00000222792	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000222792	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000222792	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
In-frame	ENST00000435288	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000435288	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000435288	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
In-frame	ENST00000495789	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000495789	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000495789	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
In-frame	ENST00000539389	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000539389	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
5CDS-5UTR	ENST00000539389	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-3CDS	ENST00000546235	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000546235	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000546235	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-3CDS	ENST00000409041	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000409041	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000409041	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-3CDS	ENST00000424025	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000424025	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000424025	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-3CDS	ENST00000439711	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000439711	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000439711	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-3CDS	ENST00000421775	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000421775	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000421775	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-3CDS	ENST00000410098	ENST00000345317		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000410098	ENST00000539623		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
intron-5UTR	ENST00000410098	ENST00000489977		TCGA	LD	OV	TCGA-31-1956-01A	CHN2	chr7	29234606	+	SKAP2	chr7	26779583	-
Frame-shit	ENST00000371429	ENST00000371399		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
In-frame	ENST00000371429	ENST00000072644		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
In-frame	ENST00000371429	ENST00000539954		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
5CDS-intron	ENST00000371429	ENST00000469457		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
3UTR-3CDS	ENST00000540001	ENST00000371399		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
3UTR-3CDS	ENST00000540001	ENST00000072644		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
3UTR-3CDS	ENST00000540001	ENST00000539954		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
3UTR-intron	ENST00000540001	ENST00000469457		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000537333	ENST00000371399		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
In-frame	ENST00000537333	ENST00000072644		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
In-frame	ENST00000537333	ENST00000539954		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
5CDS-intron	ENST00000537333	ENST00000469457		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
In-frame	ENST00000234725	ENST00000371399		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000234725	ENST00000072644		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
Frame-shit	ENST00000234725	ENST00000539954		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
5CDS-intron	ENST00000234725	ENST00000469457		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000480952	ENST00000371399		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000480952	ENST00000072644		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000480952	ENST00000539954		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
intron-intron	ENST00000480952	ENST00000469457		TCGA	LD	OV	TCGA-31-1956-01A	NDC1	chr1	54252831	-	YIPF1	chr1	54325826	-
intron-3CDS	ENST00000392474	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392474	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392474	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392474	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000392474	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000392474	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000392474	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000538733	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000538733	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000538733	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000538733	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000538733	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000538733	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000538733	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000337174	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000337174	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000337174	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000337174	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000337174	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000337174	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000337174	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000347034	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000347034	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000347034	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000347034	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000347034	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000347034	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000347034	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000324774	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000324774	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000324774	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000324774	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000324774	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000324774	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000324774	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000545538	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000545538	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000545538	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000545538	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000545538	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000545538	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000545538	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000412367	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000412367	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000412367	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000412367	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000412367	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000412367	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-intron	ENST00000412367	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000404169	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000404169	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000404169	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000404169	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000404169	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000404169	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-intron	ENST00000404169	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000402834	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000402834	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000402834	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000402834	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000402834	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000402834	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-intron	ENST00000402834	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000446440	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000446440	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000446440	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000446440	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000446440	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000446440	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000446440	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392473	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392473	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392473	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-3CDS	ENST00000392473	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000392473	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-5UTR	ENST00000392473	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
intron-intron	ENST00000392473	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000535524	ENST00000441917		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000535524	ENST00000541887		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000535524	ENST00000261819		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000535524	ENST00000535482		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000535524	ENST00000544314		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-5UTR	ENST00000535524	ENST00000344395		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-intron	ENST00000535524	ENST00000536366		TCGA	LD	OV	TCGA-31-1959-01A	CAMKK2	chr12	121734441	-	ANAPC5	chr12	121747666	-
5UTR-3CDS	ENST00000343455	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-3CDS	ENST00000343455	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-3CDS	ENST00000343455	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-3CDS	ENST00000343455	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-3CDS	ENST00000343455	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-3CDS	ENST00000343455	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-intron	ENST00000343455	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
5UTR-5UTR	ENST00000343455	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000526495	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000526495	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000526495	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000526495	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000526495	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000526495	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000526495	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000526495	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000393063	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000393063	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000393063	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000393063	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000393063	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000393063	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000393063	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000393063	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527416	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527416	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527416	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527416	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527416	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527416	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000527416	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000527416	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527414	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527414	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527414	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527414	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527414	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000527414	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000527414	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000527414	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000556045	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000556045	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000556045	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000556045	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000556045	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000556045	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000556045	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000556045	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000541352	ENST00000356136		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000541352	ENST00000528420		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000541352	ENST00000533454		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000541352	ENST00000531818		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000541352	ENST00000532130		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000541352	ENST00000539288		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000541352	ENST00000525872		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000541352	ENST00000538870		TCGA	LD	OV	TCGA-31-1959-01A	DICER1	chr14	95623567	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000340950	ENST00000424586		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000340950	ENST00000585901		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000340950	ENST00000544690		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000340950	ENST00000262629		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000340950	ENST00000589517		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000396901	ENST00000424586		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000396901	ENST00000585901		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
In-frame	ENST00000396901	ENST00000544690		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000396901	ENST00000262629		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000396901	ENST00000589517		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000352614	ENST00000424586		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000352614	ENST00000585901		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000352614	ENST00000544690		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000352614	ENST00000262629		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000352614	ENST00000589517		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
In-frame	ENST00000606253	ENST00000424586		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
In-frame	ENST00000606253	ENST00000585901		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000606253	ENST00000544690		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
In-frame	ENST00000606253	ENST00000262629		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
In-frame	ENST00000606253	ENST00000589517		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000585544	ENST00000424586		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000585544	ENST00000585901		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000585544	ENST00000544690		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000585544	ENST00000262629		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
intron-3CDS	ENST00000585544	ENST00000589517		TCGA	LD	OV	TCGA-31-1959-01A	NFKBID	chr19	36386882	-	TYROBP	chr19	36395536	-
Frame-shit	ENST00000327283	ENST00000381196		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000360074		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000537002		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000397617		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000358503		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000397611		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000355233		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000356435		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000540109		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000486161		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000327283	ENST00000397606		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000327283	ENST00000463477		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000327283	ENST00000471274		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000381196		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000360074		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000537002		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000397617		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000358503		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000397611		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000355233		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000356435		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000540109		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000486161		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000591115	ENST00000397606		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000591115	ENST00000463477		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000591115	ENST00000471274		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000381196		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000360074		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000537002		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000397617		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000358503		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000397611		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000355233		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000356435		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000540109		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000486161		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000353319	ENST00000397606		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000353319	ENST00000463477		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000353319	ENST00000471274		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000381196		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000360074		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000537002		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000397617		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000358503		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000397611		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000355233		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000356435		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000540109		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000486161		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000309660	ENST00000397606		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000309660	ENST00000463477		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5CDS-intron	ENST00000309660	ENST00000471274		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000381196		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000360074		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000537002		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000397617		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000358503		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000397611		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000355233		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000356435		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000540109		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000486161		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-3CDS	ENST00000589086	ENST00000397606		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-intron	ENST00000589086	ENST00000463477		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
5UTR-intron	ENST00000589086	ENST00000471274		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000381196		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000360074		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000537002		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000397617		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000358503		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000397611		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000355233		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000356435		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000540109		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000486161		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-3CDS	ENST00000591497	ENST00000397606		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-intron	ENST00000591497	ENST00000463477		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
intron-intron	ENST00000591497	ENST00000471274		TCGA	LD	OV	TCGA-31-1959-01A	PTPN2	chr18	12859163	-	PTPRD	chr9	8341978	-
Frame-shit	ENST00000376030	ENST00000375999		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000376030	ENST00000417793		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000376030	ENST00000358897		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000376030	ENST00000375998		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000376030	ENST00000375995		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000376030	ENST00000401090		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000376030	ENST00000471347		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000376030	ENST00000314740		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000503743	ENST00000375999		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000503743	ENST00000417793		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000503743	ENST00000358897		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000503743	ENST00000375998		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000503743	ENST00000375995		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000503743	ENST00000401090		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000503743	ENST00000471347		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000503743	ENST00000314740		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000422387	ENST00000375999		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000422387	ENST00000417793		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000422387	ENST00000358897		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000422387	ENST00000375998		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000422387	ENST00000375995		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000422387	ENST00000401090		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000422387	ENST00000471347		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000422387	ENST00000314740		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000361144	ENST00000375999		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000361144	ENST00000417793		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000361144	ENST00000358897		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000361144	ENST00000375998		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000361144	ENST00000375995		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000361144	ENST00000401090		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000361144	ENST00000471347		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000361144	ENST00000314740		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400798	ENST00000375999		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400798	ENST00000417793		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400798	ENST00000358897		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400798	ENST00000375998		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400798	ENST00000375995		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400798	ENST00000401090		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400798	ENST00000471347		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400798	ENST00000314740		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400797	ENST00000375999		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400797	ENST00000417793		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400797	ENST00000358897		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
Frame-shit	ENST00000400797	ENST00000375998		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400797	ENST00000375995		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400797	ENST00000401090		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400797	ENST00000471347		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
5CDS-intron	ENST00000400797	ENST00000314740		TCGA	LD	OV	TCGA-36-1568-01A	KAZN	chr1	15287371	+	FHAD1	chr1	15615895	+
3UTR-3CDS	ENST00000479389	ENST00000317907		TCGA	LD	OV	TCGA-36-1568-01A	RIPK1	chr6	3064293	+	TTC27	chr2	32927874	+
intron-3CDS	ENST00000259808	ENST00000317907		TCGA	LD	OV	TCGA-36-1568-01A	RIPK1	chr6	3064293	+	TTC27	chr2	32927874	+
intron-3CDS	ENST00000541791	ENST00000317907		TCGA	LD	OV	TCGA-36-1568-01A	RIPK1	chr6	3064293	+	TTC27	chr2	32927874	+
intron-3CDS	ENST00000380409	ENST00000317907		TCGA	LD	OV	TCGA-36-1568-01A	RIPK1	chr6	3064293	+	TTC27	chr2	32927874	+
Frame-shit	ENST00000353487	ENST00000257570		TCGA	LD	OV	TCGA-36-1568-01A	SPPL3	chr12	121341648	-	OASL	chr12	121458861	-
5CDS-3UTR	ENST00000353487	ENST00000339275		TCGA	LD	OV	TCGA-36-1568-01A	SPPL3	chr12	121341648	-	OASL	chr12	121458861	-
5UTR-intron	ENST00000311160	ENST00000264664		TCGA	LD	OV	TCGA-36-1569-01A	TNS3	chr7	47568634	-	FGF10	chr5	44389158	-
5UTR-intron	ENST00000355730	ENST00000264664		TCGA	LD	OV	TCGA-36-1569-01A	TNS3	chr7	47568634	-	FGF10	chr5	44389158	-
5UTR-intron	ENST00000398879	ENST00000264664		TCGA	LD	OV	TCGA-36-1569-01A	TNS3	chr7	47568634	-	FGF10	chr5	44389158	-
5UTR-intron	ENST00000442536	ENST00000264664		TCGA	LD	OV	TCGA-36-1569-01A	TNS3	chr7	47568634	-	FGF10	chr5	44389158	-
5UTR-intron	ENST00000458317	ENST00000264664		TCGA	LD	OV	TCGA-36-1569-01A	TNS3	chr7	47568634	-	FGF10	chr5	44389158	-
intron-intron	ENST00000474346	ENST00000264664		TCGA	LD	OV	TCGA-36-1569-01A	TNS3	chr7	47568634	-	FGF10	chr5	44389158	-
intron-5UTR	ENST00000517296	ENST00000377516		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-intron	ENST00000517296	ENST00000361696		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-intron	ENST00000517296	ENST00000054668		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-5UTR	ENST00000389773	ENST00000377516		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-intron	ENST00000389773	ENST00000361696		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-intron	ENST00000389773	ENST00000054668		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-5UTR	ENST00000389774	ENST00000377516		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-intron	ENST00000389774	ENST00000361696		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-intron	ENST00000389774	ENST00000054668		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-5UTR	ENST00000336963	ENST00000377516		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-intron	ENST00000336963	ENST00000361696		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-intron	ENST00000336963	ENST00000054668		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-5UTR	ENST00000356099	ENST00000377516		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-intron	ENST00000356099	ENST00000361696		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
5UTR-intron	ENST00000356099	ENST00000054668		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-5UTR	ENST00000469872	ENST00000377516		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-intron	ENST00000469872	ENST00000361696		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
intron-intron	ENST00000469872	ENST00000054668		TCGA	LD	OV	TCGA-36-1570-01A	ARHGAP8	chr22	45148507	+	UTS2	chr1	7913565	-
Frame-shit	ENST00000352480	ENST00000428715		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
5CDS-3UTR	ENST00000352480	ENST00000487727		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
5CDS-intron	ENST00000352480	ENST00000302481		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
Frame-shit	ENST00000372394	ENST00000428715		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
5CDS-3UTR	ENST00000372394	ENST00000487727		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
5CDS-intron	ENST00000372394	ENST00000302481		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
Frame-shit	ENST00000372393	ENST00000428715		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
5CDS-3UTR	ENST00000372393	ENST00000487727		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
5CDS-intron	ENST00000372393	ENST00000302481		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
intron-3CDS	ENST00000493984	ENST00000428715		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
intron-3UTR	ENST00000493984	ENST00000487727		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
intron-intron	ENST00000493984	ENST00000302481		TCGA	LD	OV	TCGA-36-1570-01A	ASS1	chr9	133329760	+	HMCN2	chr9	133294159	+
3UTR-3CDS	ENST00000215957	ENST00000412331		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
3UTR-intron	ENST00000215957	ENST00000381683		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
3UTR-intron	ENST00000215957	ENST00000406934		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
3UTR-intron	ENST00000215957	ENST00000476955		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
intron-3CDS	ENST00000402631	ENST00000412331		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
intron-intron	ENST00000402631	ENST00000381683		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
intron-intron	ENST00000402631	ENST00000406934		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
intron-intron	ENST00000402631	ENST00000476955		TCGA	LD	OV	TCGA-36-1570-01A	MICALL1	chr22	38338350	+	EIF3L	chr22	38259012	+
Frame-shit	ENST00000378106	ENST00000202816		TCGA	LD	OV	TCGA-36-1570-01A	NDUFAF5	chr20	13775587	+	ESF1	chr20	13756916	-
intron-3CDS	ENST00000463598	ENST00000202816		TCGA	LD	OV	TCGA-36-1570-01A	NDUFAF5	chr20	13775587	+	ESF1	chr20	13756916	-
intron-3CDS	ENST00000475968	ENST00000202816		TCGA	LD	OV	TCGA-36-1570-01A	NDUFAF5	chr20	13775587	+	ESF1	chr20	13756916	-
5CDS-3UTR	ENST00000317568	ENST00000525437		TCGA	LD	OV	TCGA-36-1574-01A	FRMD8	chr11	65172539	+	SLC22A20	chr11	65003880	+
intron-3UTR	ENST00000531296	ENST00000525437		TCGA	LD	OV	TCGA-36-1574-01A	FRMD8	chr11	65172539	+	SLC22A20	chr11	65003880	+
5CDS-3UTR	ENST00000355991	ENST00000525437		TCGA	LD	OV	TCGA-36-1574-01A	FRMD8	chr11	65172539	+	SLC22A20	chr11	65003880	+
5CDS-3UTR	ENST00000416776	ENST00000525437		TCGA	LD	OV	TCGA-36-1574-01A	FRMD8	chr11	65172539	+	SLC22A20	chr11	65003880	+
5UTR-intron	ENST00000487070	ENST00000461153		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5UTR-3UTR	ENST00000487070	ENST00000420699		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5UTR-intron	ENST00000487070	ENST00000357042		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000431828	ENST00000461153		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-3UTR	ENST00000431828	ENST00000420699		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000431828	ENST00000357042		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000599854	ENST00000461153		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-3UTR	ENST00000599854	ENST00000420699		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000599854	ENST00000357042		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000441706	ENST00000461153		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-3UTR	ENST00000441706	ENST00000420699		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000441706	ENST00000357042		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5UTR-intron	ENST00000440133	ENST00000461153		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5UTR-3UTR	ENST00000440133	ENST00000420699		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5UTR-intron	ENST00000440133	ENST00000357042		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000435669	ENST00000461153		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-3UTR	ENST00000435669	ENST00000420699		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5CDS-intron	ENST00000435669	ENST00000357042		TCGA	LD	OV	TCGA-36-1575-01A	KANSL3	chr2	97297049	-	ANKRD36	chr2	97930066	+
5UTR-3CDS	ENST00000401950	ENST00000544604		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000401950	ENST00000332811		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000401950	ENST00000402174		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000401950	ENST00000406323		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000544604		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000332811		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000402174		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000333027	ENST00000406323		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000544604		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000332811		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000402174		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000323630	ENST00000406323		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000544604		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000332811		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000402174		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000351488	ENST00000406323		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000544604		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000332811		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000402174		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000406629	ENST00000406323		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000544604		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000332811		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000402174		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
3UTR-3CDS	ENST00000415511	ENST00000406323		TCGA	LD	OV	TCGA-36-1575-01A	MTMR3	chr22	30279348	+	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000487273	ENST00000391411		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
5CDS-5UTR	ENST00000487273	ENST00000535846		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
5CDS-5UTR	ENST00000487273	ENST00000412778		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-3CDS	ENST00000466936	ENST00000391411		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-5UTR	ENST00000466936	ENST00000535846		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-5UTR	ENST00000466936	ENST00000412778		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-3CDS	ENST00000481513	ENST00000391411		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-5UTR	ENST00000481513	ENST00000535846		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-5UTR	ENST00000481513	ENST00000412778		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-3CDS	ENST00000484143	ENST00000391411		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-5UTR	ENST00000484143	ENST00000535846		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
intron-5UTR	ENST00000484143	ENST00000412778		TCGA	LD	OV	TCGA-36-1576-01A	ADAM9	chr8	38913291	+	C17orf51	chr17	21438799	-
Frame-shit	ENST00000263645	ENST00000155840		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
Frame-shit	ENST00000263645	ENST00000335475		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
5CDS-intron	ENST00000263645	ENST00000526095		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000492627	ENST00000155840		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000492627	ENST00000335475		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-intron	ENST00000492627	ENST00000526095		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000381036	ENST00000155840		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000381036	ENST00000335475		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-intron	ENST00000381036	ENST00000526095		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000526072	ENST00000155840		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000526072	ENST00000335475		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-intron	ENST00000526072	ENST00000526095		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000524805	ENST00000155840		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000524805	ENST00000335475		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-intron	ENST00000524805	ENST00000526095		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000481687	ENST00000155840		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-3CDS	ENST00000481687	ENST00000335475		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
intron-intron	ENST00000481687	ENST00000526095		TCGA	LD	OV	TCGA-36-1576-01A	CD81	chr11	2398845	+	KCNQ1	chr11	2683191	+
5UTR-3CDS	ENST00000405995	ENST00000372179		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
5UTR-3CDS	ENST00000405995	ENST00000393228		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
5UTR-3CDS	ENST00000405995	ENST00000360670		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
5UTR-3CDS	ENST00000405995	ENST00000393229		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
5UTR-intron	ENST00000405995	ENST00000490694		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000357304	ENST00000372179		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000357304	ENST00000393228		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000357304	ENST00000360670		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000357304	ENST00000393229		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-intron	ENST00000357304	ENST00000490694		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000458550	ENST00000372179		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000458550	ENST00000393228		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000458550	ENST00000360670		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000458550	ENST00000393229		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-intron	ENST00000458550	ENST00000490694		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000372249	ENST00000372179		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000372249	ENST00000393228		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000372249	ENST00000360670		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000372249	ENST00000393229		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-intron	ENST00000372249	ENST00000490694		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000465931	ENST00000372179		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000465931	ENST00000393228		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000465931	ENST00000360670		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-3CDS	ENST00000465931	ENST00000393229		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
intron-intron	ENST00000465931	ENST00000490694		TCGA	LD	OV	TCGA-36-1576-01A	PRRC2B	chr9	134269650	+	NTNG2	chr9	135073353	+
5CDS-intron	ENST00000222120	ENST00000358026		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000344626		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-5UTR	ENST00000222120	ENST00000429416		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000541122		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000589677		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000444061		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000590574		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000413806		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000450717		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000222120	ENST00000538456		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000358026		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000344626		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-5UTR	ENST00000589655	ENST00000429416		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000541122		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000589677		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000444061		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000590574		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000413806		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000450717		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
5CDS-intron	ENST00000589655	ENST00000538456		TCGA	LD	OV	TCGA-36-1576-01A	RAB3D	chr19	11446123	-	SMARCA4	chr19	11091453	+
Frame-shit	ENST00000254260	ENST00000253188		TCGA	LD	OV	TCGA-36-1576-01A	RHPN2	chr19	33555690	-	SLC7A10	chr19	33706879	-
5UTR-3CDS	ENST00000400226	ENST00000253188		TCGA	LD	OV	TCGA-36-1576-01A	RHPN2	chr19	33555690	-	SLC7A10	chr19	33706879	-
intron-3CDS	ENST00000588683	ENST00000253188		TCGA	LD	OV	TCGA-36-1576-01A	RHPN2	chr19	33555690	-	SLC7A10	chr19	33706879	-
intron-3CDS	ENST00000366553	ENST00000331110		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-3CDS	ENST00000366553	ENST00000348120		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-3CDS	ENST00000366553	ENST00000366563		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-3CDS	ENST00000366553	ENST00000366564		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-3CDS	ENST00000366553	ENST00000366565		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-5UTR	ENST00000366553	ENST00000446183		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-5UTR	ENST00000366553	ENST00000366562		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-5UTR	ENST00000366553	ENST00000401882		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
intron-5UTR	ENST00000366553	ENST00000407727		TCGA	LD	OV	TCGA-36-1577-01A	CHML	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000415708	ENST00000602624		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000415708	ENST00000375048		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000415708	ENST00000415136		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5CDS-intron	ENST00000415708	ENST00000477229		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000428395	ENST00000602624		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000428395	ENST00000375048		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5UTR-3CDS	ENST00000428395	ENST00000415136		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5UTR-intron	ENST00000428395	ENST00000477229		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000241502	ENST00000602624		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000241502	ENST00000375048		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000241502	ENST00000415136		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5CDS-intron	ENST00000241502	ENST00000477229		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000424384	ENST00000602624		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000424384	ENST00000375048		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
In-frame	ENST00000424384	ENST00000415136		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
5CDS-intron	ENST00000424384	ENST00000477229		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
intron-3CDS	ENST00000492360	ENST00000602624		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
intron-3CDS	ENST00000492360	ENST00000375048		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
intron-3CDS	ENST00000492360	ENST00000415136		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
intron-intron	ENST00000492360	ENST00000477229		TCGA	LD	OV	TCGA-36-1577-01A	FYTTD1	chr3	197483428	+	DDOST	chr1	20982680	-
Frame-shit	ENST00000297814	ENST00000376344		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
5CDS-5UTR	ENST00000297814	ENST00000314700		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
5CDS-5UTR	ENST00000297814	ENST00000376340		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
Frame-shit	ENST00000413982	ENST00000376344		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
5CDS-5UTR	ENST00000413982	ENST00000314700		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
5CDS-5UTR	ENST00000413982	ENST00000376340		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
Frame-shit	ENST00000334204	ENST00000376344		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
5CDS-5UTR	ENST00000334204	ENST00000314700		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
5CDS-5UTR	ENST00000334204	ENST00000376340		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
intron-3CDS	ENST00000376347	ENST00000376344		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
intron-5UTR	ENST00000376347	ENST00000314700		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
intron-5UTR	ENST00000376347	ENST00000376340		TCGA	LD	OV	TCGA-36-1577-01A	KIF27	chr9	86523367	-	C9orf64	chr9	86570555	-
intron-3CDS	ENST00000448637	ENST00000397333		TCGA	LD	OV	TCGA-36-1577-01A	LPP	chr3	188478070	+	DDX51	chr12	132627423	-
In-frame	ENST00000312675	ENST00000397333		TCGA	LD	OV	TCGA-36-1577-01A	LPP	chr3	188478070	+	DDX51	chr12	132627423	-
In-frame	ENST00000543006	ENST00000397333		TCGA	LD	OV	TCGA-36-1577-01A	LPP	chr3	188478070	+	DDX51	chr12	132627423	-
intron-3CDS	ENST00000471917	ENST00000397333		TCGA	LD	OV	TCGA-36-1577-01A	LPP	chr3	188478070	+	DDX51	chr12	132627423	-
In-frame	ENST00000366554	ENST00000331110		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000366554	ENST00000348120		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000366554	ENST00000366563		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000366554	ENST00000366564		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000366554	ENST00000366565		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000366554	ENST00000446183		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000366554	ENST00000366562		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000366554	ENST00000401882		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000366554	ENST00000407727		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000331838	ENST00000331110		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000331838	ENST00000348120		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000331838	ENST00000366563		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000331838	ENST00000366564		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
In-frame	ENST00000331838	ENST00000366565		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000331838	ENST00000446183		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000331838	ENST00000366562		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000331838	ENST00000401882		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-5UTR	ENST00000331838	ENST00000407727		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-3CDS	ENST00000469376	ENST00000331110		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-3CDS	ENST00000469376	ENST00000348120		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-3CDS	ENST00000469376	ENST00000366563		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-3CDS	ENST00000469376	ENST00000366564		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-3CDS	ENST00000469376	ENST00000366565		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-5UTR	ENST00000469376	ENST00000446183		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-5UTR	ENST00000469376	ENST00000366562		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-5UTR	ENST00000469376	ENST00000401882		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5UTR-5UTR	ENST00000469376	ENST00000407727		TCGA	LD	OV	TCGA-36-1577-01A	OPN3	chr1	241803184	-	RGS7	chr1	241262062	-
5CDS-intron	ENST00000372771	ENST00000517883		TCGA	LD	OV	TCGA-36-1577-01A	RLF	chr1	40668286	+	C2orf81	chr2	74625828	-
5CDS-intron	ENST00000372771	ENST00000290390		TCGA	LD	OV	TCGA-36-1577-01A	RLF	chr1	40668286	+	C2orf81	chr2	74625828	-
In-frame	ENST00000297423	ENST00000400454		TCGA	LD	OV	TCGA-36-1577-01A	SPIDR	chr8	48206619	+	DSCAM	chr21	41559914	-
In-frame	ENST00000518074	ENST00000400454		TCGA	LD	OV	TCGA-36-1577-01A	SPIDR	chr8	48206619	+	DSCAM	chr21	41559914	-
In-frame	ENST00000541342	ENST00000400454		TCGA	LD	OV	TCGA-36-1577-01A	SPIDR	chr8	48206619	+	DSCAM	chr21	41559914	-
3UTR-3CDS	ENST00000521214	ENST00000400454		TCGA	LD	OV	TCGA-36-1577-01A	SPIDR	chr8	48206619	+	DSCAM	chr21	41559914	-
intron-3CDS	ENST00000517693	ENST00000400454		TCGA	LD	OV	TCGA-36-1577-01A	SPIDR	chr8	48206619	+	DSCAM	chr21	41559914	-
intron-3CDS	ENST00000518060	ENST00000400454		TCGA	LD	OV	TCGA-36-1577-01A	SPIDR	chr8	48206619	+	DSCAM	chr21	41559914	-
Frame-shit	ENST00000259746	ENST00000330271		TCGA	LD	OV	TCGA-36-1577-01A	TMEM63B	chr6	44108835	+	ACTL10	chr20	32255514	+
Frame-shit	ENST00000323267	ENST00000330271		TCGA	LD	OV	TCGA-36-1577-01A	TMEM63B	chr6	44108835	+	ACTL10	chr20	32255514	+
intron-3CDS	ENST00000527188	ENST00000330271		TCGA	LD	OV	TCGA-36-1577-01A	TMEM63B	chr6	44108835	+	ACTL10	chr20	32255514	+
In-frame	ENST00000397906	ENST00000458578		TCGA	LD	OV	TCGA-36-1577-01A	TTC28	chr22	29025540	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000397906	ENST00000342192		TCGA	LD	OV	TCGA-36-1577-01A	TTC28	chr22	29025540	-	UBE2L3	chr22	21947150	+
5CDS-intron	ENST00000397906	ENST00000545681		TCGA	LD	OV	TCGA-36-1577-01A	TTC28	chr22	29025540	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000490475	ENST00000458578		TCGA	LD	OV	TCGA-36-1577-01A	TTC28	chr22	29025540	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000490475	ENST00000342192		TCGA	LD	OV	TCGA-36-1577-01A	TTC28	chr22	29025540	-	UBE2L3	chr22	21947150	+
intron-intron	ENST00000490475	ENST00000545681		TCGA	LD	OV	TCGA-36-1577-01A	TTC28	chr22	29025540	-	UBE2L3	chr22	21947150	+
Frame-shit	ENST00000546361	ENST00000263390		TCGA	LD	OV	TCGA-36-1578-01A	CHERP	chr19	16652681	-	MED26	chr19	16689220	-
Frame-shit	ENST00000198939	ENST00000263390		TCGA	LD	OV	TCGA-36-1578-01A	CHERP	chr19	16652681	-	MED26	chr19	16689220	-
intron-3CDS	ENST00000544299	ENST00000263390		TCGA	LD	OV	TCGA-36-1578-01A	CHERP	chr19	16652681	-	MED26	chr19	16689220	-
5CDS-intron	ENST00000329251	ENST00000360421		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000329251	ENST00000377871		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000329251	ENST00000458333		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000329251	ENST00000421062		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000329251	ENST00000537349		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000378019	ENST00000360421		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000378019	ENST00000377871		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000378019	ENST00000458333		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000378019	ENST00000421062		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000378019	ENST00000537349		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
intron-intron	ENST00000532986	ENST00000360421		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
intron-intron	ENST00000532986	ENST00000377871		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
intron-intron	ENST00000532986	ENST00000458333		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
intron-intron	ENST00000532986	ENST00000421062		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
intron-intron	ENST00000532986	ENST00000537349		TCGA	LD	OV	TCGA-36-1578-01A	EEF1G	chr11	62334278	-	SLC22A6	chr11	62703958	-
5CDS-5UTR	ENST00000360605	ENST00000438125		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-5UTR	ENST00000360605	ENST00000435769		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-5UTR	ENST00000360605	ENST00000343721		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-intron	ENST00000360605	ENST00000438904		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-5UTR	ENST00000542441	ENST00000438125		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-5UTR	ENST00000542441	ENST00000435769		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-5UTR	ENST00000542441	ENST00000343721		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5CDS-intron	ENST00000542441	ENST00000438904		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5UTR-5UTR	ENST00000392271	ENST00000438125		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5UTR-5UTR	ENST00000392271	ENST00000435769		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5UTR-5UTR	ENST00000392271	ENST00000343721		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
5UTR-intron	ENST00000392271	ENST00000438904		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-5UTR	ENST00000312051	ENST00000438125		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-5UTR	ENST00000312051	ENST00000435769		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-5UTR	ENST00000312051	ENST00000343721		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-intron	ENST00000312051	ENST00000438904		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-5UTR	ENST00000574176	ENST00000438125		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-5UTR	ENST00000574176	ENST00000435769		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-5UTR	ENST00000574176	ENST00000343721		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-intron	ENST00000574176	ENST00000438904		TCGA	LD	OV	TCGA-36-1578-01A	URI1	chr19	30462134	+	TYW1B	chr7	72081824	-
intron-intron	ENST00000506646	ENST00000526343		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000506646	ENST00000282441		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000506646	ENST00000537274		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000506646	ENST00000345877		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000506646	ENST00000531439		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000506646	ENST00000524575		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000506646	ENST00000528834		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000526343		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000282441		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000537274		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000345877		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000531439		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000524575		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
intron-intron	ENST00000507078	ENST00000528834		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000526343		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000282441		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000537274		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000345877		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000531439		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000524575		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000338977	ENST00000528834		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000526343		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000282441		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000537274		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000345877		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000531439		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000524575		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
5UTR-intron	ENST00000511833	ENST00000528834		TCGA	LD	OV	TCGA-36-1578-01A	ZNF721	chr4	492845	-	YAP1	chr11	102056749	+
In-frame	ENST00000428956	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
In-frame	ENST00000428956	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000428956	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
In-frame	ENST00000498271	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
In-frame	ENST00000498271	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000498271	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
Frame-shit	ENST00000537134	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
Frame-shit	ENST00000537134	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
5CDS-intron	ENST00000537134	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000467948	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000467948	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000467948	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000546746	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000546746	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000546746	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000375295	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000375295	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000375295	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000488693	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000488693	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000488693	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000421274	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000421274	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000421274	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000550297	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000550297	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000550297	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000483562	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000483562	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000483562	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000383325	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000383325	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000383325	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000549812	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000549812	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000549812	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000489963	ENST00000425424		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-3CDS	ENST00000489963	ENST00000415669		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000436320		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000552302		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000447852		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000383205		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000547662		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000457185		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000427166		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000548987		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000443153		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000425286		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000551778		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000453534		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000449925		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000548003		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
intron-intron	ENST00000489963	ENST00000449857		TCGA	LD	OV	TCGA-36-1581-01A	C4A	chr6	31952185	+	SAPCD1	chr6	31732213	+
Frame-shit	ENST00000401084	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000401084	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000401084	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000401084	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000264203	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000264203	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000264203	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000264203	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375142	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375142	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375142	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375142	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000433834	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000433834	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000433834	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000433834	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264202	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264202	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264202	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264202	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000482808	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000482808	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000482808	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000482808	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000375144	ENST00000294543		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000375144	ENST00000375127		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000375144	ENST00000489814		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000375144	ENST00000375122		TCGA	LD	OV	TCGA-36-1581-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000206595	ENST00000542754		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000206595	ENST00000313566		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000206595	ENST00000216366		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000206595	ENST00000334725		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000206595	ENST00000554609		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000206595	ENST00000554345		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
3UTR-5UTR	ENST00000544007	ENST00000542754		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
3UTR-5UTR	ENST00000544007	ENST00000313566		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
3UTR-5UTR	ENST00000544007	ENST00000216366		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
3UTR-5UTR	ENST00000544007	ENST00000334725		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
3UTR-5UTR	ENST00000544007	ENST00000554609		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
3UTR-5UTR	ENST00000544007	ENST00000554345		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000438909	ENST00000542754		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000438909	ENST00000313566		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000438909	ENST00000216366		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000438909	ENST00000334725		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000438909	ENST00000554609		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
5UTR-5UTR	ENST00000438909	ENST00000554345		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
intron-5UTR	ENST00000553504	ENST00000542754		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
intron-5UTR	ENST00000553504	ENST00000313566		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
intron-5UTR	ENST00000553504	ENST00000216366		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
intron-5UTR	ENST00000553504	ENST00000334725		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
intron-5UTR	ENST00000553504	ENST00000554609		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
intron-5UTR	ENST00000553504	ENST00000554345		TCGA	LD	OV	TCGA-36-1581-01A	G2E3	chr14	31028478	+	AP4S1	chr14	31535332	+
Frame-shit	ENST00000277541	ENST00000316144		TCGA	LD	OV	TCGA-36-1581-01A	NOTCH1	chr9	139438476	-	LCN15	chr9	139658417	-
5CDS-5UTR	ENST00000277541	ENST00000482511		TCGA	LD	OV	TCGA-36-1581-01A	NOTCH1	chr9	139438476	-	LCN15	chr9	139658417	-
intron-3CDS	ENST00000491649	ENST00000316144		TCGA	LD	OV	TCGA-36-1581-01A	NOTCH1	chr9	139438476	-	LCN15	chr9	139658417	-
intron-5UTR	ENST00000491649	ENST00000482511		TCGA	LD	OV	TCGA-36-1581-01A	NOTCH1	chr9	139438476	-	LCN15	chr9	139658417	-
5CDS-intron	ENST00000511725	ENST00000601611		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000511725	ENST00000322301		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000511725	ENST00000594432		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000253815	ENST00000601611		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000253815	ENST00000322301		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000253815	ENST00000594432		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000398733	ENST00000601611		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000398733	ENST00000322301		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000398733	ENST00000594432		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000505548	ENST00000601611		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000505548	ENST00000322301		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-intron	ENST00000505548	ENST00000594432		TCGA	LD	OV	TCGA-36-1581-01A	UBE2D2	chr5	138980020	+	OR7A5	chr19	14911576	-
5CDS-5UTR	ENST00000505286	ENST00000343470		TCGA	LD	OV	TCGA-3P-A9WA-01A	STX18	chr4	4440121	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000505286	ENST00000452476		TCGA	LD	OV	TCGA-3P-A9WA-01A	STX18	chr4	4440121	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000306200	ENST00000343470		TCGA	LD	OV	TCGA-3P-A9WA-01A	STX18	chr4	4440121	-	LYAR	chr4	4288299	-
5CDS-5UTR	ENST00000306200	ENST00000452476		TCGA	LD	OV	TCGA-3P-A9WA-01A	STX18	chr4	4440121	-	LYAR	chr4	4288299	-
3UTR-intron	ENST00000494757	ENST00000430627		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
3UTR-intron	ENST00000494757	ENST00000447079		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
3UTR-3UTR	ENST00000494757	ENST00000559545		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000323571	ENST00000430627		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000323571	ENST00000447079		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000323571	ENST00000559545		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000585043	ENST00000430627		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000585043	ENST00000447079		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000585043	ENST00000559545		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394103	ENST00000430627		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394103	ENST00000447079		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000394103	ENST00000559545		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
intron-intron	ENST00000536600	ENST00000430627		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
intron-intron	ENST00000536600	ENST00000447079		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000536600	ENST00000559545		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000583130	ENST00000430627		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-intron	ENST00000583130	ENST00000447079		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
5CDS-3UTR	ENST00000583130	ENST00000559545		TCGA	LD	OV	TCGA-3P-A9WA-01A	WIPF2	chr17	38421398	+	CDK12	chr17	37721013	+
Frame-shit	ENST00000260408	ENST00000595483		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000260408	ENST00000263368		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000402627	ENST00000595483		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000402627	ENST00000263368		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000561288	ENST00000595483		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000561288	ENST00000263368		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000396140	ENST00000595483		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000396140	ENST00000263368		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000558733	ENST00000595483		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
5UTR-3CDS	ENST00000558733	ENST00000263368		TCGA	LD	OV	TCGA-57-1582-01A	ADAM10	chr15	59041679	-	BLVRB	chr19	40964452	-
Frame-shit	ENST00000373318	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000373318	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373318	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373318	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373318	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373318	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000373318	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
In-frame	ENST00000391987	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
In-frame	ENST00000391987	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000391987	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000391987	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000391987	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000391987	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000391987	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
In-frame	ENST00000373320	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
In-frame	ENST00000373320	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373320	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373320	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373320	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000373320	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000373320	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000406958	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000406958	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000406958	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000406958	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000406958	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000406958	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000406958	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000272972	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000272972	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000272972	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000272972	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000272972	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000272972	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000272972	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000361678	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000361678	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000361678	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000361678	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000361678	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000361678	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000361678	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000403283	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000403283	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000403283	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000403283	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000403283	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000403283	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000403283	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000401804	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
Frame-shit	ENST00000401804	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000401804	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000401804	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000401804	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000401804	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-5UTR	ENST00000401804	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000536462	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000536462	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000536462	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000536462	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000536462	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000536462	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-5UTR	ENST00000536462	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000405523	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000405523	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405523	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405523	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405523	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405523	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-5UTR	ENST00000405523	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000405002	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000405002	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405002	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405002	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405002	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000405002	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-5UTR	ENST00000405002	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000462004	ENST00000286063		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-3CDS	ENST00000462004	ENST00000358450		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000462004	ENST00000450799		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000462004	ENST00000409504		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000462004	ENST00000389683		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-intron	ENST00000462004	ENST00000449286		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
intron-5UTR	ENST00000462004	ENST00000497003		TCGA	LD	OV	TCGA-57-1582-01A	ANKMY1	chr2	241439375	-	PDE11A	chr2	178634101	-
5CDS-intron	ENST00000402550	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000402550	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000402550	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
intron-intron	ENST00000452318	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
intron-intron	ENST00000452318	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
intron-3UTR	ENST00000452318	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000402394	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000402394	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000402394	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000405600	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000405600	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000405600	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000312734	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000312734	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000312734	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000404694	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000404694	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000404694	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000260595	ENST00000513449		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-intron	ENST00000260595	ENST00000389737		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
5CDS-3UTR	ENST00000260595	ENST00000511366		TCGA	LD	OV	TCGA-57-1582-01A	CGREF1	chr2	27327155	-	TRMT44	chr4	8494993	+
Frame-shit	ENST00000261942	ENST00000298569		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
5CDS-intron	ENST00000261942	ENST00000393728		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
5CDS-5UTR	ENST00000261942	ENST00000393725		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
5CDS-5UTR	ENST00000261942	ENST00000510164		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
5CDS-intron	ENST00000261942	ENST00000533553		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
intron-3CDS	ENST00000510446	ENST00000298569		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
intron-intron	ENST00000510446	ENST00000393728		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
intron-5UTR	ENST00000510446	ENST00000393725		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
intron-5UTR	ENST00000510446	ENST00000510164		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
intron-intron	ENST00000510446	ENST00000533553		TCGA	LD	OV	TCGA-57-1582-01A	FAF2	chr5	175875471	+	KIAA1191	chr5	175782752	-
5CDS-5UTR	ENST00000064778	ENST00000368073		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000064778	ENST00000326837		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000064778	ENST00000368074		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000064778	ENST00000608310		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000064778	ENST00000556710		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000064778	ENST00000610139		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000064778	ENST00000475733		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000368073		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000326837		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000368074		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000608310		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000556710		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000610139		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000450446	ENST00000475733		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000368073		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000326837		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000368074		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000608310		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000556710		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000610139		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
5CDS-5UTR	ENST00000356467	ENST00000475733		TCGA	LD	OV	TCGA-57-1582-01A	FAM168A	chr11	73179450	-	DCAF8	chr1	160213824	-
In-frame	ENST00000500597	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
In-frame	ENST00000500597	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
In-frame	ENST00000407977	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
In-frame	ENST00000407977	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
Frame-shit	ENST00000583753	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
Frame-shit	ENST00000583753	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
Frame-shit	ENST00000584437	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
Frame-shit	ENST00000584437	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
Frame-shit	ENST00000577716	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
Frame-shit	ENST00000577716	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
intron-3CDS	ENST00000581868	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
intron-3CDS	ENST00000581868	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
intron-3CDS	ENST00000577625	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
intron-3CDS	ENST00000577625	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
intron-3CDS	ENST00000580014	ENST00000313608		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
intron-3CDS	ENST00000580014	ENST00000578444		TCGA	LD	OV	TCGA-57-1582-01A	RNF43	chr17	56492686	-	MRPS23	chr17	55926770	-
5UTR-3CDS	ENST00000565677	ENST00000303391		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
5UTR-3CDS	ENST00000565677	ENST00000453960		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
5UTR-3CDS	ENST00000565677	ENST00000407218		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
5UTR-5UTR	ENST00000565677	ENST00000460227		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
Frame-shit	ENST00000219548	ENST00000303391		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
Frame-shit	ENST00000219548	ENST00000453960		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
Frame-shit	ENST00000219548	ENST00000407218		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
5CDS-5UTR	ENST00000219548	ENST00000460227		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-3CDS	ENST00000564370	ENST00000303391		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-3CDS	ENST00000564370	ENST00000453960		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-3CDS	ENST00000564370	ENST00000407218		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-5UTR	ENST00000564370	ENST00000460227		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-3CDS	ENST00000566181	ENST00000303391		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-3CDS	ENST00000566181	ENST00000453960		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-3CDS	ENST00000566181	ENST00000407218		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
intron-5UTR	ENST00000566181	ENST00000460227		TCGA	LD	OV	TCGA-57-1582-01A	STUB1	chr16	730684	+	MECP2	chrX	153298008	-
5UTR-3CDS	ENST00000326181	ENST00000541451		TCGA	LD	OV	TCGA-57-1582-01A	TRAF7	chr16	2205859	+	RAB26	chr16	2201570	+
5UTR-3CDS	ENST00000326181	ENST00000210187		TCGA	LD	OV	TCGA-57-1582-01A	TRAF7	chr16	2205859	+	RAB26	chr16	2201570	+
In-frame	ENST00000400590	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000400590	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000320220	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000320220	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000382466	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000382466	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
5UTR-3CDS	ENST00000542645	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
5UTR-3CDS	ENST00000542645	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000415724	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000415724	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000422251	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
In-frame	ENST00000422251	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
intron-3CDS	ENST00000494731	ENST00000268379		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
intron-3CDS	ENST00000494731	ENST00000561553		TCGA	LD	OV	TCGA-57-1582-01A	ZDHHC20	chr13	22033193	-	UQCRC2	chr16	21979949	+
5CDS-intron	ENST00000360403	ENST00000361727		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5CDS-intron	ENST00000360403	ENST00000538075		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5CDS-intron	ENST00000360403	ENST00000463592		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5CDS-intron	ENST00000372183	ENST00000361727		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5CDS-intron	ENST00000372183	ENST00000538075		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5CDS-intron	ENST00000372183	ENST00000463592		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5UTR-intron	ENST00000480675	ENST00000361727		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5UTR-intron	ENST00000480675	ENST00000538075		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5UTR-intron	ENST00000480675	ENST00000463592		TCGA	LD	OV	TCGA-57-1583-01A	EIF2B3	chr1	45392300	-	CNTNAP2	chr7	147340479	+
5CDS-5UTR	ENST00000394121	ENST00000301659		TCGA	LD	OV	TCGA-57-1583-01A	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000264637	ENST00000301659		TCGA	LD	OV	TCGA-57-1583-01A	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000584985	ENST00000301659		TCGA	LD	OV	TCGA-57-1583-01A	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000450525	ENST00000301659		TCGA	LD	OV	TCGA-57-1583-01A	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000546243	ENST00000301659		TCGA	LD	OV	TCGA-57-1583-01A	THRA	chr17	38233861	+	GSDMA	chr17	38121936	+
Frame-shit	ENST00000589799	ENST00000252699		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000589799	ENST00000424234		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000589799	ENST00000390009		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000589799	ENST00000497637		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000589248	ENST00000252699		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000589248	ENST00000424234		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000589248	ENST00000390009		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000589248	ENST00000497637		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000291182	ENST00000252699		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
Frame-shit	ENST00000291182	ENST00000424234		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000291182	ENST00000390009		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000291182	ENST00000497637		TCGA	LD	OV	TCGA-57-1583-01A	ZNF235	chr19	44802961	-	ACTN4	chr19	39191240	+
5CDS-3UTR	ENST00000278174	ENST00000521788		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
5CDS-3UTR	ENST00000278174	ENST00000332843		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000530907	ENST00000521788		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000530907	ENST00000332843		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000528120	ENST00000521788		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000528120	ENST00000332843		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000532261	ENST00000521788		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3UTR	ENST00000532261	ENST00000332843		TCGA	LD	OV	TCGA-57-1584-01A	BTBD10	chr11	13466571	-	COLEC10	chr8	120101919	+
intron-3CDS	ENST00000360265	ENST00000344938		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000360265	ENST00000344408		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000360265	ENST00000310917		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5UTR-3CDS	ENST00000358461	ENST00000344938		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5UTR-3CDS	ENST00000358461	ENST00000344408		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5UTR-3CDS	ENST00000358461	ENST00000310917		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5UTR-3CDS	ENST00000420658	ENST00000344938		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5UTR-3CDS	ENST00000420658	ENST00000344408		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5UTR-3CDS	ENST00000420658	ENST00000310917		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000382543	ENST00000344938		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000382543	ENST00000344408		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000382543	ENST00000310917		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000513842	ENST00000344938		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000513842	ENST00000344408		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
intron-3CDS	ENST00000513842	ENST00000310917		TCGA	LD	OV	TCGA-57-1585-01A	AFAP1	chr4	7941383	-	EVC2	chr4	5570367	-
5CDS-3UTR	ENST00000378847	ENST00000474155		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
5CDS-5UTR	ENST00000378847	ENST00000277570		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
5CDS-intron	ENST00000378847	ENST00000379200		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
intron-3UTR	ENST00000487696	ENST00000474155		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
intron-5UTR	ENST00000487696	ENST00000277570		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
intron-intron	ENST00000487696	ENST00000379200		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
5CDS-3UTR	ENST00000378845	ENST00000474155		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
5CDS-5UTR	ENST00000378845	ENST00000277570		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
5CDS-intron	ENST00000378845	ENST00000379200		TCGA	LD	OV	TCGA-57-1585-01A	CAMK1D	chr10	12595355	+	PROSER2	chr10	11893996	+
In-frame	ENST00000361183	ENST00000307003		TCGA	LD	OV	TCGA-57-1585-01A	CAPZA2	chr7	116538889	+	C7orf33	chr7	148311134	+
In-frame	ENST00000458284	ENST00000307003		TCGA	LD	OV	TCGA-57-1585-01A	CAPZA2	chr7	116538889	+	C7orf33	chr7	148311134	+
In-frame	ENST00000490693	ENST00000307003		TCGA	LD	OV	TCGA-57-1585-01A	CAPZA2	chr7	116538889	+	C7orf33	chr7	148311134	+
intron-3CDS	ENST00000466023	ENST00000307003		TCGA	LD	OV	TCGA-57-1585-01A	CAPZA2	chr7	116538889	+	C7orf33	chr7	148311134	+
Frame-shit	ENST00000331495	ENST00000592782		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
Frame-shit	ENST00000331495	ENST00000258960		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
5CDS-3UTR	ENST00000331495	ENST00000590114		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
Frame-shit	ENST00000328118	ENST00000592782		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
Frame-shit	ENST00000328118	ENST00000258960		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
5CDS-3UTR	ENST00000328118	ENST00000590114		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
intron-3CDS	ENST00000592006	ENST00000592782		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
intron-3CDS	ENST00000592006	ENST00000258960		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
intron-3UTR	ENST00000592006	ENST00000590114		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
intron-3CDS	ENST00000587489	ENST00000592782		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
intron-3CDS	ENST00000587489	ENST00000258960		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
intron-3UTR	ENST00000587489	ENST00000590114		TCGA	LD	OV	TCGA-57-1585-01A	FMNL1	chr17	43299620	+	NMT1	chr17	43159012	+
In-frame	ENST00000435120	ENST00000261407		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
5CDS-5UTR	ENST00000435120	ENST00000535021		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
In-frame	ENST00000203630	ENST00000261407		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
5CDS-5UTR	ENST00000203630	ENST00000535021		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
Frame-shit	ENST00000542154	ENST00000261407		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
5CDS-5UTR	ENST00000542154	ENST00000535021		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
Frame-shit	ENST00000539187	ENST00000261407		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
5CDS-5UTR	ENST00000539187	ENST00000535021		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
intron-3CDS	ENST00000564181	ENST00000261407		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
intron-5UTR	ENST00000564181	ENST00000535021		TCGA	LD	OV	TCGA-57-1585-01A	MLF2	chr12	6861451	-	LPCAT3	chr12	7086424	-
Frame-shit	ENST00000434536	ENST00000265433		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
Frame-shit	ENST00000434536	ENST00000409330		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
Frame-shit	ENST00000252512	ENST00000265433		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
Frame-shit	ENST00000252512	ENST00000409330		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
intron-3CDS	ENST00000518017	ENST00000265433		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
intron-3CDS	ENST00000518017	ENST00000409330		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
intron-3CDS	ENST00000433566	ENST00000265433		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
intron-3CDS	ENST00000433566	ENST00000409330		TCGA	LD	OV	TCGA-57-1585-01A	XPO7	chr8	21777299	+	NBN	chr8	90983518	-
5CDS-5UTR	ENST00000372324	ENST00000342505		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000372324	ENST00000465376		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000434555	ENST00000342505		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000434555	ENST00000465376		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000356836	ENST00000342505		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000356836	ENST00000465376		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000309519	ENST00000342505		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-intron	ENST00000309519	ENST00000465376		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
intron-5UTR	ENST00000481924	ENST00000342505		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
intron-intron	ENST00000481924	ENST00000465376		TCGA	LD	OV	TCGA-57-1586-01A	B4GALT2	chr1	44447596	+	JAK1	chr1	65352024	-
5CDS-5UTR	ENST00000264555	ENST00000431809		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000264555	ENST00000397582		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-intron	ENST00000264555	ENST00000524468		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000264555	ENST00000344375		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000264555	ENST00000397583		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000264555	ENST00000454668		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000413872	ENST00000431809		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000413872	ENST00000397582		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-intron	ENST00000413872	ENST00000524468		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000413872	ENST00000344375		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000413872	ENST00000397583		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000413872	ENST00000454668		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000533464	ENST00000431809		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000533464	ENST00000397582		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-intron	ENST00000533464	ENST00000524468		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000533464	ENST00000344375		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000533464	ENST00000397583		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000533464	ENST00000454668		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000416188	ENST00000431809		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000416188	ENST00000397582		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-intron	ENST00000416188	ENST00000524468		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000416188	ENST00000344375		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000416188	ENST00000397583		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000416188	ENST00000454668		TCGA	LD	OV	TCGA-57-1586-01A	PHRF1	chr11	591467	+	RASSF7	chr11	561762	+
5CDS-5UTR	ENST00000361368	ENST00000449309		TCGA	LD	OV	TCGA-57-1586-01A	SMURF1	chr7	98741349	-	FAM200A	chr7	99146129	-
5CDS-5UTR	ENST00000361125	ENST00000449309		TCGA	LD	OV	TCGA-57-1586-01A	SMURF1	chr7	98741349	-	FAM200A	chr7	99146129	-
intron-5UTR	ENST00000480055	ENST00000449309		TCGA	LD	OV	TCGA-57-1586-01A	SMURF1	chr7	98741349	-	FAM200A	chr7	99146129	-
In-frame	ENST00000531120	ENST00000323959		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
In-frame	ENST00000531120	ENST00000524827		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000531120	ENST00000526480		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000531120	ENST00000438862		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000531120	ENST00000431742		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
In-frame	ENST00000524896	ENST00000323959		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
In-frame	ENST00000524896	ENST00000524827		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000524896	ENST00000526480		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000524896	ENST00000438862		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5CDS-5UTR	ENST00000524896	ENST00000431742		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000532054	ENST00000323959		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
intron-3CDS	ENST00000532054	ENST00000524827		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000532054	ENST00000526480		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000532054	ENST00000438862		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
intron-5UTR	ENST00000532054	ENST00000431742		TCGA	LD	OV	TCGA-57-1993-01A	EIF3M	chr11	32605475	+	CSTF3	chr11	33163532	-
5UTR-5UTR	ENST00000380266	ENST00000329152		TCGA	LD	OV	TCGA-57-1993-01A	FASTKD5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000380266	ENST00000360342		TCGA	LD	OV	TCGA-57-1993-01A	FASTKD5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000380266	ENST00000337576		TCGA	LD	OV	TCGA-57-1993-01A	FASTKD5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-3CDS	ENST00000361413	ENST00000451882		TCGA	LD	OV	TCGA-57-1993-01A	KIAA0753	chr17	6543957	-	HSBP1L1	chr18	77730440	+
intron-3CDS	ENST00000542606	ENST00000451882		TCGA	LD	OV	TCGA-57-1993-01A	KIAA0753	chr17	6543957	-	HSBP1L1	chr18	77730440	+
5UTR-3CDS	ENST00000572370	ENST00000451882		TCGA	LD	OV	TCGA-57-1993-01A	KIAA0753	chr17	6543957	-	HSBP1L1	chr18	77730440	+
intron-3CDS	ENST00000589033	ENST00000451882		TCGA	LD	OV	TCGA-57-1993-01A	KIAA0753	chr17	6543957	-	HSBP1L1	chr18	77730440	+
intron-3CDS	ENST00000575027	ENST00000451882		TCGA	LD	OV	TCGA-57-1993-01A	KIAA0753	chr17	6543957	-	HSBP1L1	chr18	77730440	+
intron-3CDS	ENST00000261596	ENST00000539941		TCGA	LD	OV	TCGA-57-1993-01A	LPIN2	chr18	3013085	-	COPS3	chr17	17152353	-
intron-3CDS	ENST00000261596	ENST00000268717		TCGA	LD	OV	TCGA-57-1993-01A	LPIN2	chr18	3013085	-	COPS3	chr17	17152353	-
intron-3CDS	ENST00000261596	ENST00000439936		TCGA	LD	OV	TCGA-57-1993-01A	LPIN2	chr18	3013085	-	COPS3	chr17	17152353	-
intron-3CDS	ENST00000581568	ENST00000539941		TCGA	LD	OV	TCGA-57-1993-01A	LPIN2	chr18	3013085	-	COPS3	chr17	17152353	-
intron-3CDS	ENST00000581568	ENST00000268717		TCGA	LD	OV	TCGA-57-1993-01A	LPIN2	chr18	3013085	-	COPS3	chr17	17152353	-
intron-3CDS	ENST00000581568	ENST00000439936		TCGA	LD	OV	TCGA-57-1993-01A	LPIN2	chr18	3013085	-	COPS3	chr17	17152353	-
5CDS-5UTR	ENST00000579226	ENST00000400569		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000579226	ENST00000356443		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000579226	ENST00000261606		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000579226	ENST00000582016		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000217652	ENST00000400569		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000217652	ENST00000356443		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000217652	ENST00000261606		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000217652	ENST00000582016		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000578611	ENST00000400569		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000578611	ENST00000356443		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000578611	ENST00000261606		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000578611	ENST00000582016		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
intron-5UTR	ENST00000585090	ENST00000400569		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
intron-5UTR	ENST00000585090	ENST00000356443		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
intron-intron	ENST00000585090	ENST00000261606		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
intron-intron	ENST00000585090	ENST00000582016		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000580887	ENST00000400569		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000580887	ENST00000356443		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000580887	ENST00000261606		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000580887	ENST00000582016		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000536605	ENST00000400569		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-5UTR	ENST00000536605	ENST00000356443		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000536605	ENST00000261606		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5CDS-intron	ENST00000536605	ENST00000582016		TCGA	LD	OV	TCGA-57-1993-01A	MYL12A	chr18	3254048	+	MYOM1	chr18	3219876	-
5UTR-intron	ENST00000381352	ENST00000556485		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000381352	ENST00000354454		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000381352	ENST00000548766		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000381352	ENST00000547044		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000405154	ENST00000556485		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000405154	ENST00000354454		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000405154	ENST00000548766		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000405154	ENST00000547044		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000542865	ENST00000556485		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000542865	ENST00000354454		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000542865	ENST00000548766		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000542865	ENST00000547044		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000541490	ENST00000556485		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000541490	ENST00000354454		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000541490	ENST00000548766		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
5UTR-intron	ENST00000541490	ENST00000547044		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000282884	ENST00000556485		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000282884	ENST00000354454		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000282884	ENST00000548766		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
intron-intron	ENST00000282884	ENST00000547044		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
3UTR-intron	ENST00000538081	ENST00000556485		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
3UTR-intron	ENST00000538081	ENST00000354454		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
3UTR-intron	ENST00000538081	ENST00000548766		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
3UTR-intron	ENST00000538081	ENST00000547044		TCGA	LD	OV	TCGA-57-1993-01A	RASSF8	chr12	26148063	+	LRMP	chr12	25164305	+
In-frame	ENST00000358161	ENST00000372648		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000358161	ENST00000539497		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5CDS-3UTR	ENST00000358161	ENST00000466056		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5CDS-intron	ENST00000358161	ENST00000223865		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000372739	ENST00000372648		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000372739	ENST00000539497		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5CDS-3UTR	ENST00000372739	ENST00000466056		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5CDS-intron	ENST00000372739	ENST00000223865		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000372731	ENST00000372648		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000372731	ENST00000539497		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5CDS-3UTR	ENST00000372731	ENST00000466056		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5CDS-intron	ENST00000372731	ENST00000223865		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
intron-3CDS	ENST00000475367	ENST00000372648		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
intron-3CDS	ENST00000475367	ENST00000539497		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
intron-3UTR	ENST00000475367	ENST00000466056		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
intron-intron	ENST00000475367	ENST00000223865		TCGA	LD	OV	TCGA-57-1993-01A	SPTAN1	chr9	131331176	+	TBC1D13	chr9	131565529	+
5UTR-5UTR	ENST00000348031	ENST00000329152		TCGA	LD	OV	TCGA-57-1993-01A	UBOX5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000348031	ENST00000360342		TCGA	LD	OV	TCGA-57-1993-01A	UBOX5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000348031	ENST00000337576		TCGA	LD	OV	TCGA-57-1993-01A	UBOX5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000217173	ENST00000329152		TCGA	LD	OV	TCGA-57-1993-01A	UBOX5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000217173	ENST00000360342		TCGA	LD	OV	TCGA-57-1993-01A	UBOX5	chr20	3140412	-	LZTS3	chr20	3148607	-
5UTR-5UTR	ENST00000217173	ENST00000337576		TCGA	LD	OV	TCGA-57-1993-01A	UBOX5	chr20	3140412	-	LZTS3	chr20	3148607	-
5CDS-intron	ENST00000313143	ENST00000324557		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000313143	ENST00000402825		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000313143	ENST00000359140		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000313143	ENST00000404464		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000313143	ENST00000357474		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000431765	ENST00000324557		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000431765	ENST00000402825		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000431765	ENST00000359140		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000431765	ENST00000404464		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-intron	ENST00000431765	ENST00000357474		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
intron-intron	ENST00000462665	ENST00000324557		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
intron-intron	ENST00000462665	ENST00000402825		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
intron-intron	ENST00000462665	ENST00000359140		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
intron-intron	ENST00000462665	ENST00000404464		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
intron-intron	ENST00000462665	ENST00000357474		TCGA	LD	OV	TCGA-57-1994-01A	DVL3	chr3	183885853	+	ECE2	chr3	184009850	+
5CDS-3UTR	ENST00000263388	ENST00000490088		TCGA	LD	OV	TCGA-57-1994-01A	NOTCH3	chr19	15308311	-	HOXD10	chr2	176973635	+
5CDS-intron	ENST00000263388	ENST00000249501		TCGA	LD	OV	TCGA-57-1994-01A	NOTCH3	chr19	15308311	-	HOXD10	chr2	176973635	+
intron-3UTR	ENST00000263388	ENST00000498438		TCGA	LD	OV	TCGA-57-1994-01A	NOTCH3	chr19	15302859	-	HOXD11	chr2	176969285	+
intron-intron	ENST00000263388	ENST00000249504		TCGA	LD	OV	TCGA-57-1994-01A	NOTCH3	chr19	15302859	-	HOXD11	chr2	176969285	+
In-frame	ENST00000301244	ENST00000424586		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000301244	ENST00000585901		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000301244	ENST00000544690		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000301244	ENST00000262629		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000301244	ENST00000589517		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
intron-3CDS	ENST00000587090	ENST00000424586		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
intron-3CDS	ENST00000587090	ENST00000585901		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
intron-3CDS	ENST00000587090	ENST00000544690		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
intron-3CDS	ENST00000587090	ENST00000262629		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
intron-3CDS	ENST00000587090	ENST00000589517		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000454580	ENST00000424586		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000454580	ENST00000585901		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000454580	ENST00000544690		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000454580	ENST00000262629		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
In-frame	ENST00000454580	ENST00000589517		TCGA	LD	OV	TCGA-57-1994-01A	SPINT2	chr19	38755638	+	TYROBP	chr19	36398482	-
intron-5UTR	ENST00000383777	ENST00000414318		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3UTR	ENST00000383777	ENST00000253692		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3UTR	ENST00000383777	ENST00000429383		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-intron	ENST00000383777	ENST00000446818		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-intron	ENST00000383777	ENST00000429924		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-5UTR	ENST00000399451	ENST00000414318		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3UTR	ENST00000399451	ENST00000253692		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3UTR	ENST00000399451	ENST00000429383		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-intron	ENST00000399451	ENST00000446818		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-intron	ENST00000399451	ENST00000429924		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-5UTR	ENST00000497037	ENST00000414318		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3UTR	ENST00000497037	ENST00000253692		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3UTR	ENST00000497037	ENST00000429383		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-intron	ENST00000497037	ENST00000446818		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-intron	ENST00000497037	ENST00000429924		TCGA	LD	OV	TCGA-59-2348-01A	ANKRD28	chr3	15719024	-	TBC1D5	chr3	17201978	-
intron-3CDS	ENST00000491671	ENST00000347635		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000491671	ENST00000407019		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000491671	ENST00000425733		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000491671	ENST00000396096		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-intron	ENST00000491671	ENST00000486184		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000216214	ENST00000347635		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000216214	ENST00000407019		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000216214	ENST00000425733		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000216214	ENST00000396096		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-intron	ENST00000216214	ENST00000486184		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000441876	ENST00000347635		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000441876	ENST00000407019		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000441876	ENST00000425733		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000441876	ENST00000396096		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-intron	ENST00000441876	ENST00000486184		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000405673	ENST00000347635		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000405673	ENST00000407019		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000405673	ENST00000425733		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-3CDS	ENST00000405673	ENST00000396096		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
5UTR-intron	ENST00000405673	ENST00000486184		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000405548	ENST00000347635		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000405548	ENST00000407019		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000405548	ENST00000425733		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-3CDS	ENST00000405548	ENST00000396096		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
intron-intron	ENST00000405548	ENST00000486184		TCGA	LD	OV	TCGA-59-2348-01A	FAM118A	chr22	45706064	+	NUP50	chr22	45577167	+
Frame-shit	ENST00000411990	ENST00000342560		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000411990	ENST00000372952		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000411990	ENST00000537864		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000367080	ENST00000342560		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000367080	ENST00000372952		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000367080	ENST00000537864		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000367079	ENST00000342560		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000367079	ENST00000372952		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000367079	ENST00000537864		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000545806	ENST00000342560		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000545806	ENST00000372952		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000545806	ENST00000537864		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
Frame-shit	ENST00000541914	ENST00000342560		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-intron	ENST00000541914	ENST00000372952		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5CDS-5UTR	ENST00000541914	ENST00000537864		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
intron-3CDS	ENST00000473310	ENST00000342560		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
intron-intron	ENST00000473310	ENST00000372952		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
intron-5UTR	ENST00000473310	ENST00000537864		TCGA	LD	OV	TCGA-59-2348-01A	PFKFB2	chr1	207238505	+	GDAP1L1	chr20	42891870	+
5UTR-intron	ENST00000461988	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000461988	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000461988	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000461988	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000461988	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000419840	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000419840	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000419840	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000419840	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000419840	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000394893	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000394893	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-intron	ENST00000394893	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000394893	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
5UTR-3UTR	ENST00000394893	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000475509	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000475509	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000475509	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000475509	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000475509	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000545601	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000545601	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000545601	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000545601	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000545601	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000450476	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000450476	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000450476	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000450476	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000450476	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000439269	ENST00000461263		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000439269	ENST00000315758		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-intron	ENST00000439269	ENST00000443006		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000439269	ENST00000490105		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
intron-3UTR	ENST00000439269	ENST00000432020		TCGA	LD	OV	TCGA-59-2348-01A	POR	chr7	75544497	+	MDH2	chr7	75684148	+
Frame-shit	ENST00000327283	ENST00000250448		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000327283	ENST00000540786		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000327283	ENST00000545425		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000591115	ENST00000250448		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000591115	ENST00000540786		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000591115	ENST00000545425		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000353319	ENST00000250448		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000353319	ENST00000540786		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000353319	ENST00000545425		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000309660	ENST00000250448		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000309660	ENST00000540786		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000309660	ENST00000545425		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
intron-3CDS	ENST00000589086	ENST00000250448		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
intron-5UTR	ENST00000589086	ENST00000540786		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
intron-5UTR	ENST00000589086	ENST00000545425		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
intron-3CDS	ENST00000591497	ENST00000250448		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
intron-5UTR	ENST00000591497	ENST00000540786		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
intron-5UTR	ENST00000591497	ENST00000545425		TCGA	LD	OV	TCGA-59-2348-01A	PTPN2	chr18	12884072	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000244496	ENST00000485511		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
Frame-shit	ENST00000244496	ENST00000394110		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
5CDS-intron	ENST00000244496	ENST00000472118		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
5CDS-intron	ENST00000244496	ENST00000461010		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
intron-3CDS	ENST00000607555	ENST00000485511		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
intron-3CDS	ENST00000607555	ENST00000394110		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
intron-intron	ENST00000607555	ENST00000472118		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
intron-intron	ENST00000607555	ENST00000461010		TCGA	LD	OV	TCGA-59-2348-01A	RRP36	chr6	42989522	+	PPP2R5D	chr6	42974201	+
In-frame	ENST00000256689	ENST00000261250		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
In-frame	ENST00000256689	ENST00000545746		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
5CDS-intron	ENST00000256689	ENST00000509318		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
Frame-shit	ENST00000551374	ENST00000261250		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
Frame-shit	ENST00000551374	ENST00000545746		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
5CDS-intron	ENST00000551374	ENST00000509318		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
intron-3CDS	ENST00000547252	ENST00000261250		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
intron-3CDS	ENST00000547252	ENST00000545746		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
intron-intron	ENST00000547252	ENST00000509318		TCGA	LD	OV	TCGA-59-2348-01A	SLC38A2	chr12	46758172	-	C12orf4	chr12	4634749	-
intron-3CDS	ENST00000547002	ENST00000367658		TCGA	LD	OV	TCGA-59-2348-01A	SLC48A1	chr12	48167223	+	HECA	chr6	139487421	+
intron-3CDS	ENST00000442892	ENST00000367658		TCGA	LD	OV	TCGA-59-2348-01A	SLC48A1	chr12	48167223	+	HECA	chr6	139487421	+
In-frame	ENST00000442218	ENST00000367658		TCGA	LD	OV	TCGA-59-2348-01A	SLC48A1	chr12	48167223	+	HECA	chr6	139487421	+
intron-3CDS	ENST00000476104	ENST00000367658		TCGA	LD	OV	TCGA-59-2348-01A	SLC48A1	chr12	48167223	+	HECA	chr6	139487421	+
In-frame	ENST00000327367	ENST00000307102		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
5CDS-intron	ENST00000327367	ENST00000566326		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-3CDS	ENST00000559092	ENST00000307102		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-intron	ENST00000559092	ENST00000566326		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-3CDS	ENST00000540846	ENST00000307102		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-intron	ENST00000540846	ENST00000566326		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-3CDS	ENST00000439724	ENST00000307102		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-intron	ENST00000439724	ENST00000566326		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-3CDS	ENST00000537194	ENST00000307102		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
intron-intron	ENST00000537194	ENST00000566326		TCGA	LD	OV	TCGA-59-2351-01A	SMAD3	chr15	67358698	+	MAP2K1	chr15	66727365	+
5UTR-3CDS	ENST00000397195	ENST00000173229		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
5UTR-3CDS	ENST00000397195	ENST00000538852		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
5UTR-3CDS	ENST00000397195	ENST00000546090		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
3UTR-3CDS	ENST00000572915	ENST00000173229		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
3UTR-3CDS	ENST00000572915	ENST00000538852		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
3UTR-3CDS	ENST00000572915	ENST00000546090		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
intron-3CDS	ENST00000451360	ENST00000173229		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
intron-3CDS	ENST00000451360	ENST00000538852		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
intron-3CDS	ENST00000451360	ENST00000546090		TCGA	LD	OV	TCGA-59-2352-01A	PAFAH1B1	chr17	2497300	+	NTN1	chr17	9066130	+
5UTR-3CDS	ENST00000348405	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000348405	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000348405	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000513858	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000513858	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000513858	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000395310	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000395310	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000395310	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
Frame-shit	ENST00000443462	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5CDS-intron	ENST00000443462	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5CDS-intron	ENST00000443462	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000509142	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000509142	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000509142	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000326950	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000326950	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000326950	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000432794	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000432794	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000432794	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000311785	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000311785	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000311785	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000448323	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000448323	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000448323	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-3CDS	ENST00000505472	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000505472	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000505472	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-3CDS	ENST00000500777	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000500777	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000500777	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000508502	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000508502	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000508502	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-3CDS	ENST00000355196	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000355196	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000355196	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-3CDS	ENST00000264405	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000264405	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
intron-intron	ENST00000264405	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000505984	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000505984	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000505984	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000508479	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000508479	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000508479	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-3CDS	ENST00000436790	ENST00000319540		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000436790	ENST00000273908		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5UTR-intron	ENST00000436790	ENST00000282709		TCGA	LD	OV	TCGA-59-2352-01A	SEC31A	chr4	83812241	-	SCD5	chr4	83557976	-
5CDS-intron	ENST00000406775	ENST00000262865		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000406775	ENST00000489102		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000406775	ENST00000451435		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000342771	ENST00000262865		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000342771	ENST00000489102		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000342771	ENST00000451435		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000403018	ENST00000262865		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000403018	ENST00000489102		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000403018	ENST00000451435		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
intron-intron	ENST00000489774	ENST00000262865		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
intron-intron	ENST00000489774	ENST00000489102		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
intron-intron	ENST00000489774	ENST00000451435		TCGA	LD	OV	TCGA-59-2354-01A	AUTS2	chr7	69064948	+	BPI	chr20	36917118	+
5CDS-intron	ENST00000317551	ENST00000552491		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000317551	ENST00000547825		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000317551	ENST00000552823		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000317551	ENST00000394943		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000317551	ENST00000341247		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000317551	ENST00000552783		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000317551	ENST00000552909		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-5UTR	ENST00000317551	ENST00000552008		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000552491		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000547825		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000552823		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000394943		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000341247		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000552783		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-intron	ENST00000422340	ENST00000552909		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
5CDS-5UTR	ENST00000422340	ENST00000552008		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000552491		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000547825		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000552823		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000394943		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000341247		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000552783		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-intron	ENST00000547852	ENST00000552909		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
intron-5UTR	ENST00000547852	ENST00000552008		TCGA	LD	OV	TCGA-59-2354-01A	CERS5	chr12	50528329	-	LIMA1	chr12	50599851	-
Frame-shit	ENST00000356175	ENST00000325874		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
Frame-shit	ENST00000358273	ENST00000325874		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000431387	ENST00000325874		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000431387	ENST00000581280		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000431387	ENST00000394744		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	OV	TCGA-59-2354-01A	NF1	chr17	29592357	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000392750	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000392750	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000392750	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000392750	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000392750	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000473645	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000473645	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000473645	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000473645	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000473645	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000497056	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000497056	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000497056	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000497056	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000497056	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000492396	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000492396	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000492396	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000492396	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000492396	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000461494	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000461494	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000461494	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000461494	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000461494	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000470131	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000470131	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000470131	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000470131	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000470131	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487947	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487947	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487947	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487947	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487947	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000471885	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000471885	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000471885	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000471885	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
5UTR-intron	ENST00000471885	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487678	ENST00000543067		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487678	ENST00000425654		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487678	ENST00000279451		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487678	ENST00000379510		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
intron-intron	ENST00000487678	ENST00000485012		TCGA	LD	OV	TCGA-59-2354-01A	PDCD10	chr3	167452594	-	CNKSR2	chrX	21666949	+
In-frame	ENST00000373237	ENST00000373374		TCGA	LD	OV	TCGA-59-2355-01A	PSMB2	chr1	36096875	-	C1orf94	chr1	34673758	+
In-frame	ENST00000373237	ENST00000488417		TCGA	LD	OV	TCGA-59-2355-01A	PSMB2	chr1	36096875	-	C1orf94	chr1	34673758	+
intron-3CDS	ENST00000530124	ENST00000329251		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000530124	ENST00000378019		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-intron	ENST00000530124	ENST00000532986		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000257247	ENST00000329251		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000257247	ENST00000378019		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-intron	ENST00000257247	ENST00000532986		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000525875	ENST00000329251		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000525875	ENST00000378019		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-intron	ENST00000525875	ENST00000532986		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000378024	ENST00000329251		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-3CDS	ENST00000378024	ENST00000378019		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-intron	ENST00000378024	ENST00000532986		TCGA	LD	OV	TCGA-59-2363-01A	AHNAK	chr11	62301133	-	EEF1G	chr11	62327926	-
intron-intron	ENST00000338110	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000338110	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000338110	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000338110	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395248	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395248	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395248	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395248	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000575627	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000575627	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000575627	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000575627	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000566897	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000566897	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000566897	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000566897	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569545	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569545	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569545	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569545	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000563060	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000563060	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000563060	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000563060	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000412304	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000412304	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000412304	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000412304	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564546	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564546	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564546	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564546	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564595	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564595	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564595	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000564595	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569798	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569798	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569798	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000569798	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395240	ENST00000497424		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395240	ENST00000316562		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395240	ENST00000610179		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
intron-intron	ENST00000395240	ENST00000464452		TCGA	LD	OV	TCGA-59-2363-01A	ALDOA	chr16	30079857	+	PANK2	chr20	3909994	+
Frame-shit	ENST00000378204	ENST00000522684		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000535192		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
In-frame	ENST00000378204	ENST00000519465		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000517887		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000521059		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000395218		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000538769		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000340930		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000378204	ENST00000519419		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000430260		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000519881		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000520892		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000519635		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000517712		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000522950		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
5CDS-intron	ENST00000378204	ENST00000520151		TCGA	LD	OV	TCGA-59-2363-01A	EXT1	chr8	118816961	-	PTK2	chr8	141774389	-
Frame-shit	ENST00000450735	ENST00000322019		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000450735	ENST00000379386		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000450735	ENST00000379390		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000450735	ENST00000565774		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
5CDS-3UTR	ENST00000450735	ENST00000564988		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000304231	ENST00000322019		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000304231	ENST00000379386		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000304231	ENST00000379390		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000304231	ENST00000565774		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
5CDS-3UTR	ENST00000304231	ENST00000564988		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000399166	ENST00000322019		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000399166	ENST00000379386		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000399166	ENST00000379390		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000399166	ENST00000565774		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
5CDS-3UTR	ENST00000399166	ENST00000564988		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000426485	ENST00000322019		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000426485	ENST00000379386		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000426485	ENST00000379390		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000426485	ENST00000565774		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
5CDS-3UTR	ENST00000426485	ENST00000564988		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
intron-3CDS	ENST00000500334	ENST00000322019		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
intron-3CDS	ENST00000500334	ENST00000379386		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
intron-3CDS	ENST00000500334	ENST00000379390		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
intron-3CDS	ENST00000500334	ENST00000565774		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
intron-3UTR	ENST00000500334	ENST00000564988		TCGA	LD	OV	TCGA-59-2363-01A	HOMER2	chr15	83621283	-	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000404260	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000404260	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000404260	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000403625	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000403625	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000403625	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000406374	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000406374	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-intron	ENST00000406374	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000406039	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000406039	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-intron	ENST00000406039	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000478569	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000478569	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-intron	ENST00000478569	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000490016	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000490016	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000490016	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000403666	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000403666	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000403666	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000405643	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000405643	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000405643	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000261569	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
Frame-shit	ENST00000261569	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5CDS-intron	ENST00000261569	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000407621	ENST00000261308		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-3CDS	ENST00000407621	ENST00000535264		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
intron-intron	ENST00000407621	ENST00000538977		TCGA	LD	OV	TCGA-59-2363-01A	MAST4	chr5	66386059	+	PPWD1	chr5	64863340	+
5UTR-5UTR	ENST00000520643	ENST00000353107		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
5UTR-5UTR	ENST00000520643	ENST00000522439		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
5UTR-3UTR	ENST00000520643	ENST00000519765		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
5UTR-5UTR	ENST00000251809	ENST00000353107		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
5UTR-5UTR	ENST00000251809	ENST00000522439		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
5UTR-3UTR	ENST00000251809	ENST00000519765		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000520508	ENST00000353107		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000520508	ENST00000522439		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000520508	ENST00000519765		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000388798	ENST00000353107		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000388798	ENST00000522439		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000388798	ENST00000519765		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000523302	ENST00000353107		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000523302	ENST00000522439		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000523302	ENST00000519765		TCGA	LD	OV	TCGA-59-2363-01A	SPAG1	chr8	101170346	+	POLR2K	chr8	101163575	+
Frame-shit	ENST00000508802	ENST00000511469		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000508802	ENST00000264218		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000508802	ENST00000505262		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000508802	ENST00000507338		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
5CDS-5UTR	ENST00000508802	ENST00000515325		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000261439	ENST00000511469		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000261439	ENST00000264218		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000261439	ENST00000505262		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
Frame-shit	ENST00000261439	ENST00000507338		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
5CDS-5UTR	ENST00000261439	ENST00000515325		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000402522	ENST00000511469		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000402522	ENST00000264218		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000402522	ENST00000505262		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000402522	ENST00000507338		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-5UTR	ENST00000402522	ENST00000515325		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000407365	ENST00000511469		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000407365	ENST00000264218		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000407365	ENST00000505262		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-3CDS	ENST00000407365	ENST00000507338		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
intron-5UTR	ENST00000407365	ENST00000515325		TCGA	LD	OV	TCGA-59-A5PD-01A	TBC1D1	chr4	38055959	+	NMU	chr4	56466742	-
5CDS-5UTR	ENST00000261192	ENST00000307378		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000261192	ENST00000537524		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000261192	ENST00000473830		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000261192	ENST00000452078		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000261192	ENST00000458504		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-intron	ENST00000261192	ENST00000390670		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000538118	ENST00000307378		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000538118	ENST00000537524		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000538118	ENST00000473830		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000538118	ENST00000452078		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000538118	ENST00000458504		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-intron	ENST00000538118	ENST00000390670		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000342945	ENST00000307378		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000342945	ENST00000537524		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000342945	ENST00000473830		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000342945	ENST00000452078		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000342945	ENST00000458504		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-intron	ENST00000342945	ENST00000390670		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539282	ENST00000307378		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539282	ENST00000537524		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539282	ENST00000473830		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539282	ENST00000452078		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539282	ENST00000458504		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-intron	ENST00000539282	ENST00000390670		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539780	ENST00000307378		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539780	ENST00000537524		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539780	ENST00000473830		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539780	ENST00000452078		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000539780	ENST00000458504		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-intron	ENST00000539780	ENST00000390670		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
intron-5UTR	ENST00000544418	ENST00000307378		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
intron-5UTR	ENST00000544418	ENST00000537524		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
intron-5UTR	ENST00000544418	ENST00000473830		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
intron-5UTR	ENST00000544418	ENST00000452078		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
intron-5UTR	ENST00000544418	ENST00000458504		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
intron-intron	ENST00000544418	ENST00000390670		TCGA	LD	OV	TCGA-5X-AA5U-01A	BCAT1	chr12	24982757	-	SLCO1A2	chr12	21487638	-
5CDS-5UTR	ENST00000357637	ENST00000450466		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000357637	ENST00000383233		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000357637	ENST00000542162		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000357637	ENST00000399707		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000357637	ENST00000475185		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000400334	ENST00000450466		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000400334	ENST00000383233		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000400334	ENST00000542162		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000400334	ENST00000399707		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000400334	ENST00000475185		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
intron-5UTR	ENST00000593225	ENST00000450466		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
intron-5UTR	ENST00000593225	ENST00000383233		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
intron-5UTR	ENST00000593225	ENST00000542162		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
intron-intron	ENST00000593225	ENST00000399707		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
intron-intron	ENST00000593225	ENST00000475185		TCGA	LD	OV	TCGA-5X-AA5U-01A	PIGN	chr18	59828366	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000221431	ENST00000222345		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000221431	ENST00000476317		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5UTR-5UTR	ENST00000594171	ENST00000222345		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5UTR-3UTR	ENST00000594171	ENST00000476317		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-5UTR	ENST00000430193	ENST00000222345		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000430193	ENST00000476317		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
intron-5UTR	ENST00000598831	ENST00000222345		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
intron-3UTR	ENST00000598831	ENST00000476317		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-5UTR	ENST00000448145	ENST00000222345		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000448145	ENST00000476317		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-5UTR	ENST00000600042	ENST00000222345		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000600042	ENST00000476317		TCGA	LD	OV	TCGA-5X-AA5U-01A	SARS2	chr19	39416845	-	SIPA1L3	chr19	38519729	+
5CDS-5UTR	ENST00000366911	ENST00000569074		TCGA	LD	OV	TCGA-61-1724-01A	AGPAT4	chr6	161653068	-	CASC17	chr17	69181796	-
5CDS-5UTR	ENST00000320285	ENST00000569074		TCGA	LD	OV	TCGA-61-1724-01A	AGPAT4	chr6	161653068	-	CASC17	chr17	69181796	-
5CDS-5UTR	ENST00000457520	ENST00000569074		TCGA	LD	OV	TCGA-61-1724-01A	AGPAT4	chr6	161653068	-	CASC17	chr17	69181796	-
5CDS-5UTR	ENST00000366908	ENST00000569074		TCGA	LD	OV	TCGA-61-1724-01A	AGPAT4	chr6	161653068	-	CASC17	chr17	69181796	-
intron-5UTR	ENST00000366906	ENST00000569074		TCGA	LD	OV	TCGA-61-1724-01A	AGPAT4	chr6	161653068	-	CASC17	chr17	69181796	-
5CDS-5UTR	ENST00000366905	ENST00000569074		TCGA	LD	OV	TCGA-61-1724-01A	AGPAT4	chr6	161653068	-	CASC17	chr17	69181796	-
In-frame	ENST00000445755	ENST00000399429		TCGA	LD	OV	TCGA-61-1724-01A	CCDC124	chr19	18047388	+	COL28A1	chr7	7421243	-
In-frame	ENST00000597436	ENST00000399429		TCGA	LD	OV	TCGA-61-1724-01A	CCDC124	chr19	18047388	+	COL28A1	chr7	7421243	-
In-frame	ENST00000181839	ENST00000403058		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
In-frame	ENST00000181839	ENST00000518318		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000181839	ENST00000517348		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000181839	ENST00000559001		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000181839	ENST00000464276		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
In-frame	ENST00000340829	ENST00000403058		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
In-frame	ENST00000340829	ENST00000518318		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000340829	ENST00000517348		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000340829	ENST00000559001		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
5CDS-intron	ENST00000340829	ENST00000464276		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
3UTR-3CDS	ENST00000484589	ENST00000403058		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
3UTR-3CDS	ENST00000484589	ENST00000518318		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
3UTR-intron	ENST00000484589	ENST00000517348		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
3UTR-intron	ENST00000484589	ENST00000559001		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
3UTR-intron	ENST00000484589	ENST00000464276		TCGA	LD	OV	TCGA-61-1724-01A	CDK13	chr7	40041630	+	POU6F2	chr7	39500146	+
Frame-shit	ENST00000280333	ENST00000398023		TCGA	LD	OV	TCGA-61-1724-01A	DOCK1	chr10	128780237	+	NPS	chr10	129350724	+
intron-3CDS	ENST00000484400	ENST00000398023		TCGA	LD	OV	TCGA-61-1724-01A	DOCK1	chr10	128780237	+	NPS	chr10	129350724	+
5CDS-intron	ENST00000313654	ENST00000327087		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000313654	ENST00000546188		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000313654	ENST00000356134		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000313654	ENST00000538154		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000399516	ENST00000327087		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000399516	ENST00000546188		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000399516	ENST00000356134		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
5CDS-intron	ENST00000399516	ENST00000538154		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000269217	ENST00000327087		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000269217	ENST00000546188		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000269217	ENST00000356134		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000269217	ENST00000538154		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000587184	ENST00000327087		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000587184	ENST00000546188		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000587184	ENST00000356134		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000587184	ENST00000538154		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000588770	ENST00000327087		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000588770	ENST00000546188		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000588770	ENST00000356134		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
intron-intron	ENST00000588770	ENST00000538154		TCGA	LD	OV	TCGA-61-1724-01A	LAMA3	chr18	21294036	+	ANO2	chr12	5641280	-
In-frame	ENST00000356056	ENST00000569795		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000356056	ENST00000413097		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000356056	ENST00000260376		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000356056	ENST00000287196		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
In-frame	ENST00000444904	ENST00000569795		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000444904	ENST00000413097		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000444904	ENST00000260376		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000444904	ENST00000287196		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
In-frame	ENST00000424560	ENST00000569795		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000424560	ENST00000413097		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000424560	ENST00000260376		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000424560	ENST00000287196		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
In-frame	ENST00000564571	ENST00000569795		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000564571	ENST00000413097		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000564571	ENST00000260376		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000564571	ENST00000287196		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
Frame-shit	ENST00000566885	ENST00000569795		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000566885	ENST00000413097		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000566885	ENST00000260376		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000566885	ENST00000287196		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5UTR-3CDS	ENST00000563542	ENST00000569795		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000563542	ENST00000413097		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000563542	ENST00000260376		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000563542	ENST00000287196		TCGA	LD	OV	TCGA-61-1724-01A	MYO9A	chr15	72196270	-	PARP6	chr15	72535040	-
5CDS-5UTR	ENST00000518852	ENST00000240095		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000518852	ENST00000359741		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000518852	ENST00000381237		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000518852	ENST00000289952		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000240139	ENST00000240095		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000240139	ENST00000359741		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000240139	ENST00000381237		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000240139	ENST00000289952		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000289963	ENST00000240095		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000289963	ENST00000359741		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000289963	ENST00000381237		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000289963	ENST00000289952		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000397775	ENST00000240095		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000397775	ENST00000359741		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000397775	ENST00000381237		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-5UTR	ENST00000397775	ENST00000289952		TCGA	LD	OV	TCGA-61-1724-01A	PPP3CC	chr8	22333137	+	SLC39A14	chr8	22262209	+
5CDS-intron	ENST00000424082	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000424082	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000259351	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000394022	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373436	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-intron	ENST00000373434	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000394011	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000394084		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000469528		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000394105		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000265956		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000394104		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000470056		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000394083		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000495955		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000297933		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
intron-intron	ENST00000480993	ENST00000312123		TCGA	LD	OV	TCGA-61-1724-01A	RALGPS1	chr9	129831635	+	GAPVD1	chr9	128109098	+
5CDS-5UTR	ENST00000272638	ENST00000409478		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000329971		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000264160		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000410054		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000272638	ENST00000409606		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
5CDS-intron	ENST00000272638	ENST00000443537		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000409478		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000329971		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000264160		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000410054		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
3UTR-5UTR	ENST00000490163	ENST00000409606		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
3UTR-intron	ENST00000490163	ENST00000443537		TCGA	LD	OV	TCGA-61-1724-01A	UBXN4	chr2	136527393	+	R3HDM1	chr2	136360070	+
Frame-shit	ENST00000339859	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
Frame-shit	ENST00000408019	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
Frame-shit	ENST00000428547	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
5UTR-3CDS	ENST00000394811	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
intron-3CDS	ENST00000497106	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
intron-3CDS	ENST00000422491	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
In-frame	ENST00000319786	ENST00000359322		TCGA	LD	OV	TCGA-61-1724-01A	USP54	chr10	75331179	-	MYOZ1	chr10	75397680	-
In-frame	ENST00000283206	ENST00000295408		TCGA	LD	OV	TCGA-61-1725-01A	TMEM87B	chr2	112821830	+	MERTK	chr2	112776990	+
In-frame	ENST00000283206	ENST00000421804		TCGA	LD	OV	TCGA-61-1725-01A	TMEM87B	chr2	112821830	+	MERTK	chr2	112776990	+
In-frame	ENST00000283206	ENST00000409780		TCGA	LD	OV	TCGA-61-1725-01A	TMEM87B	chr2	112821830	+	MERTK	chr2	112776990	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	LD	OV	TCGA-61-1725-01A	TMEM87B	chr2	112821830	+	MERTK	chr2	112776990	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	LD	OV	TCGA-61-1725-01A	TMEM87B	chr2	112821830	+	MERTK	chr2	112776990	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	LD	OV	TCGA-61-1725-01A	TMEM87B	chr2	112821830	+	MERTK	chr2	112776990	+
Frame-shit	ENST00000395914	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395914	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395914	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395914	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395909	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395909	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395909	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395909	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
In-frame	ENST00000371356	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
In-frame	ENST00000371356	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000371356	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000371356	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000347343	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000347343	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000347343	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000347343	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395911	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395911	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395911	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395911	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
In-frame	ENST00000312783	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
In-frame	ENST00000312783	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000312783	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000312783	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395915	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395915	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395915	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395915	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
In-frame	ENST00000395913	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
In-frame	ENST00000395913	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395913	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395913	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395907	ENST00000237536		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
Frame-shit	ENST00000395907	ENST00000279034		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395907	ENST00000456801		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5CDS-intron	ENST00000395907	ENST00000357779		TCGA	LD	OV	TCGA-61-1728-01A	AURKA	chr20	54956489	-	SOGA1	chr20	35445872	-
5UTR-3CDS	ENST00000290776	ENST00000309137		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000290776	ENST00000389447		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000290776	ENST00000566077		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000290776	ENST00000569266		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000290776	ENST00000567439		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000290776	ENST00000564108		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-intron	ENST00000290776	ENST00000562400		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000537605	ENST00000309137		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000537605	ENST00000389447		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000537605	ENST00000566077		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000537605	ENST00000569266		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000537605	ENST00000567439		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000537605	ENST00000564108		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-intron	ENST00000537605	ENST00000562400		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000535318	ENST00000309137		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000535318	ENST00000389447		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000535318	ENST00000566077		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000535318	ENST00000569266		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000535318	ENST00000567439		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000535318	ENST00000564108		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-intron	ENST00000535318	ENST00000562400		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565874	ENST00000309137		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565874	ENST00000389447		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565874	ENST00000566077		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565874	ENST00000569266		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565874	ENST00000567439		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565874	ENST00000564108		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-intron	ENST00000565874	ENST00000562400		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565951	ENST00000309137		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565951	ENST00000389447		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565951	ENST00000566077		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565951	ENST00000569266		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565951	ENST00000567439		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-3CDS	ENST00000565951	ENST00000564108		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
intron-intron	ENST00000565951	ENST00000562400		TCGA	LD	OV	TCGA-61-1728-01A	CPNE2	chr16	57126702	+	FAM192A	chr16	57197977	-
5UTR-3CDS	ENST00000261811	ENST00000509990		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-3CDS	ENST00000261811	ENST00000361059		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-3CDS	ENST00000261811	ENST00000504203		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-3CDS	ENST00000261811	ENST00000502929		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-3CDS	ENST00000261811	ENST00000394800		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-intron	ENST00000261811	ENST00000507197		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-intron	ENST00000261811	ENST00000394805		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-intron	ENST00000261811	ENST00000502499		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-intron	ENST00000261811	ENST00000510056		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
5UTR-intron	ENST00000261811	ENST00000503811		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-3CDS	ENST00000509789	ENST00000509990		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-3CDS	ENST00000509789	ENST00000361059		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-3CDS	ENST00000509789	ENST00000504203		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-3CDS	ENST00000509789	ENST00000502929		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-3CDS	ENST00000509789	ENST00000394800		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-intron	ENST00000509789	ENST00000507197		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-intron	ENST00000509789	ENST00000394805		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-intron	ENST00000509789	ENST00000502499		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-intron	ENST00000509789	ENST00000510056		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
3UTR-intron	ENST00000509789	ENST00000503811		TCGA	LD	OV	TCGA-61-1728-01A	CYSTM1	chr5	139554870	+	MATR3	chr5	138654597	+
In-frame	ENST00000263390	ENST00000430939		TCGA	LD	OV	TCGA-61-1728-01A	MED26	chr19	16738683	-	SLC1A6	chr19	15083729	-
In-frame	ENST00000263390	ENST00000221742		TCGA	LD	OV	TCGA-61-1728-01A	MED26	chr19	16738683	-	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000263390	ENST00000600144		TCGA	LD	OV	TCGA-61-1728-01A	MED26	chr19	16738683	-	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000263390	ENST00000598504		TCGA	LD	OV	TCGA-61-1728-01A	MED26	chr19	16738683	-	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000263390	ENST00000544886		TCGA	LD	OV	TCGA-61-1728-01A	MED26	chr19	16738683	-	SLC1A6	chr19	15083729	-
5UTR-3CDS	ENST00000595618	ENST00000261560		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
5UTR-intron	ENST00000595618	ENST00000599548		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
5UTR-intron	ENST00000595618	ENST00000595401		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
5UTR-3CDS	ENST00000594824	ENST00000261560		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
5UTR-intron	ENST00000594824	ENST00000599548		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
5UTR-intron	ENST00000594824	ENST00000595401		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
intron-3CDS	ENST00000397274	ENST00000261560		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
intron-intron	ENST00000397274	ENST00000599548		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
intron-intron	ENST00000397274	ENST00000595401		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
intron-3CDS	ENST00000593411	ENST00000261560		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
intron-intron	ENST00000593411	ENST00000599548		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
intron-intron	ENST00000593411	ENST00000595401		TCGA	LD	OV	TCGA-61-1728-01A	MYO9B	chr19	17186684	+	ZNF430	chr19	21239437	+
5CDS-intron	ENST00000341846	ENST00000264033		TCGA	LD	OV	TCGA-61-1728-01A	TRIM29	chr11	119988931	-	CBL	chr11	119184128	+
5CDS-intron	ENST00000524816	ENST00000264033		TCGA	LD	OV	TCGA-61-1728-01A	TRIM29	chr11	119988931	-	CBL	chr11	119184128	+
5CDS-intron	ENST00000541857	ENST00000264033		TCGA	LD	OV	TCGA-61-1728-01A	TRIM29	chr11	119988931	-	CBL	chr11	119184128	+
5UTR-intron	ENST00000525887	ENST00000264033		TCGA	LD	OV	TCGA-61-1728-01A	TRIM29	chr11	119988931	-	CBL	chr11	119184128	+
5CDS-intron	ENST00000528870	ENST00000264033		TCGA	LD	OV	TCGA-61-1728-01A	TRIM29	chr11	119988931	-	CBL	chr11	119184128	+
5CDS-intron	ENST00000529044	ENST00000264033		TCGA	LD	OV	TCGA-61-1728-01A	TRIM29	chr11	119988931	-	CBL	chr11	119184128	+
intron-3CDS	ENST00000268489	ENST00000398309		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-3CDS	ENST00000268489	ENST00000376104		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000418306		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000280241		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000543673		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000376106		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000330014		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000537455		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000524982		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000532653		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000531015		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000398301		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000426717		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000404783		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000398304		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000530800		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000268489	ENST00000472545		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-3CDS	ENST00000397992	ENST00000398309		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-3CDS	ENST00000397992	ENST00000376104		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000418306		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000280241		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000543673		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000376106		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000330014		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000537455		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000524982		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000532653		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000531015		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000398301		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000426717		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000404783		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000398304		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000530800		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
5UTR-intron	ENST00000397992	ENST00000472545		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-3CDS	ENST00000558842	ENST00000398309		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-3CDS	ENST00000558842	ENST00000376104		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000418306		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000280241		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000543673		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000376106		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000330014		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000537455		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000524982		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000532653		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000531015		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000398301		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000426717		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000404783		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000398304		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000530800		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-intron	ENST00000558842	ENST00000472545		TCGA	LD	OV	TCGA-61-1728-01A	ZFHX3	chr16	73092429	-	DLG2	chr11	84245774	-
intron-5UTR	ENST00000593699	ENST00000011684		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000593699	ENST00000536531		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000593699	ENST00000396988		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-intron	ENST00000593699	ENST00000449001		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-3UTR	ENST00000593699	ENST00000538208		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-intron	ENST00000593699	ENST00000304581		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000372499	ENST00000011684		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000372499	ENST00000536531		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000372499	ENST00000396988		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-intron	ENST00000372499	ENST00000449001		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-3UTR	ENST00000372499	ENST00000538208		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-intron	ENST00000372499	ENST00000304581		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000496424	ENST00000011684		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000496424	ENST00000536531		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-5UTR	ENST00000496424	ENST00000396988		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-intron	ENST00000496424	ENST00000449001		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-3UTR	ENST00000496424	ENST00000538208		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
intron-intron	ENST00000496424	ENST00000304581		TCGA	LD	OV	TCGA-61-1733-01A	C10orf11	chr10	77198252	+	PLEKHG6	chr12	6421325	+
In-frame	ENST00000462484	ENST00000291503		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
In-frame	ENST00000462484	ENST00000357324		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
5CDS-intron	ENST00000462484	ENST00000496082		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
In-frame	ENST00000334856	ENST00000291503		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
In-frame	ENST00000334856	ENST00000357324		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
5CDS-intron	ENST00000334856	ENST00000496082		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
In-frame	ENST00000460843	ENST00000291503		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
In-frame	ENST00000460843	ENST00000357324		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
5CDS-intron	ENST00000460843	ENST00000496082		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
3UTR-3CDS	ENST00000371394	ENST00000291503		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
3UTR-3CDS	ENST00000371394	ENST00000357324		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
3UTR-intron	ENST00000371394	ENST00000496082		TCGA	LD	OV	TCGA-61-1733-01A	EHMT1	chr9	140611634	+	ATP13A1	chr19	19770796	-
In-frame	ENST00000574876	ENST00000358183		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000574876	ENST00000414043		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000574876	ENST00000361571		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000574876	ENST00000572543		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000574876	ENST00000381311		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000574876	ENST00000348066		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
5CDS-intron	ENST00000574876	ENST00000571831		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000572293	ENST00000358183		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000572293	ENST00000414043		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000572293	ENST00000361571		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000572293	ENST00000572543		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000572293	ENST00000381311		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000572293	ENST00000348066		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
5CDS-intron	ENST00000572293	ENST00000571831		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000269230	ENST00000358183		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000269230	ENST00000414043		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000269230	ENST00000361571		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000269230	ENST00000572543		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000269230	ENST00000381311		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000269230	ENST00000348066		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-intron	ENST00000269230	ENST00000571831		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000301396	ENST00000358183		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000301396	ENST00000414043		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000301396	ENST00000361571		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000301396	ENST00000572543		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000301396	ENST00000381311		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
In-frame	ENST00000301396	ENST00000348066		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
5CDS-intron	ENST00000301396	ENST00000571831		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
Frame-shit	ENST00000436683	ENST00000358183		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
Frame-shit	ENST00000436683	ENST00000414043		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
Frame-shit	ENST00000436683	ENST00000361571		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
Frame-shit	ENST00000436683	ENST00000572543		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
Frame-shit	ENST00000436683	ENST00000381311		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
Frame-shit	ENST00000436683	ENST00000348066		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
5CDS-intron	ENST00000436683	ENST00000571831		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000570823	ENST00000358183		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000570823	ENST00000414043		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000570823	ENST00000361571		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000570823	ENST00000572543		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000570823	ENST00000381311		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-3CDS	ENST00000570823	ENST00000348066		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
intron-intron	ENST00000570823	ENST00000571831		TCGA	LD	OV	TCGA-61-1733-01A	PELP1	chr17	4577805	-	CAMTA2	chr17	4877795	-
5UTR-intron	ENST00000309156	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
5UTR-intron	ENST00000309156	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
5UTR-3UTR	ENST00000309156	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
5UTR-intron	ENST00000309185	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
5UTR-intron	ENST00000309185	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
5UTR-3UTR	ENST00000309185	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394211	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394211	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000394211	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000578702	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000578702	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000578702	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000445327	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000445327	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000445327	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394209	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394209	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000394209	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394204	ENST00000430627		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-intron	ENST00000394204	ENST00000447079		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
intron-3UTR	ENST00000394204	ENST00000559545		TCGA	LD	OV	TCGA-61-1736-01B	GRB7	chr17	37894386	+	CDK12	chr17	37721013	+
5UTR-3CDS	ENST00000437941	ENST00000440886		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
5UTR-3CDS	ENST00000437941	ENST00000370611		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
5UTR-5UTR	ENST00000437941	ENST00000491034		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-3CDS	ENST00000342203	ENST00000440886		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-3CDS	ENST00000342203	ENST00000370611		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-5UTR	ENST00000342203	ENST00000491034		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-3CDS	ENST00000605755	ENST00000440886		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-3CDS	ENST00000605755	ENST00000370611		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-5UTR	ENST00000605755	ENST00000491034		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
5UTR-3CDS	ENST00000603677	ENST00000440886		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
5UTR-3CDS	ENST00000603677	ENST00000370611		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
5UTR-5UTR	ENST00000603677	ENST00000491034		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-3CDS	ENST00000370612	ENST00000440886		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-3CDS	ENST00000370612	ENST00000370611		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
intron-5UTR	ENST00000370612	ENST00000491034		TCGA	LD	OV	TCGA-61-1736-01B	SSX2IP	chr1	85155837	-	LPAR3	chr1	85279854	-
Frame-shit	ENST00000311573	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000311573	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000311573	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000311573	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000311573	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000311573	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000311573	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000368340	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368340	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368340	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368340	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368340	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368340	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368340	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000347088	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000347088	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000347088	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000347088	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000347088	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000347088	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000347088	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000361831	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361831	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361831	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361831	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000361831	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000361831	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000361831	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000355499	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000355499	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000355499	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000355499	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000355499	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000355499	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000355499	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000404643	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000404643	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000404643	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000404643	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000404643	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000404643	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000404643	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000407221	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000407221	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000407221	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000407221	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000407221	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000407221	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000407221	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000359205	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000359205	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000359205	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000359205	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000359205	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000359205	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000359205	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000295566	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000295566	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000295566	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000295566	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000295566	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000295566	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000295566	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
Frame-shit	ENST00000368330	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368330	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368330	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368330	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368330	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368330	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368330	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000368339	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368339	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368339	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368339	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000368339	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368339	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000368339	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000535662	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000535662	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000535662	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000535662	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000535662	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000535662	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000535662	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000405763	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000405763	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000405763	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000405763	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-5UTR	ENST00000405763	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000405763	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
5CDS-intron	ENST00000405763	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-3CDS	ENST00000438245	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000438245	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000438245	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000438245	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000438245	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000438245	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000438245	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-3CDS	ENST00000476093	ENST00000368315		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000476093	ENST00000313695		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000476093	ENST00000361247		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000476093	ENST00000368316		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-5UTR	ENST00000476093	ENST00000462460		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000476093	ENST00000477754		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
intron-intron	ENST00000476093	ENST00000313667		TCGA	LD	OV	TCGA-61-1736-01B	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155939091	-
In-frame	ENST00000372759	ENST00000372797		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
In-frame	ENST00000372759	ENST00000372802		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
In-frame	ENST00000372759	ENST00000372792		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
In-frame	ENST00000372759	ENST00000372798		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
In-frame	ENST00000372759	ENST00000340450		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
In-frame	ENST00000372759	ENST00000372805		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
5CDS-3UTR	ENST00000372759	ENST00000479759		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3CDS	ENST00000479131	ENST00000372797		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3CDS	ENST00000479131	ENST00000372802		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3CDS	ENST00000479131	ENST00000372792		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3CDS	ENST00000479131	ENST00000372798		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3CDS	ENST00000479131	ENST00000340450		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3CDS	ENST00000479131	ENST00000372805		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
intron-3UTR	ENST00000479131	ENST00000479759		TCGA	LD	OV	TCGA-61-1736-01B	ZMPSTE24	chr1	40737707	+	CAP1	chr1	40535362	+
In-frame	ENST00000545260	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000545260	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000545693	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000545693	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000350537	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000350537	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000346874	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000346874	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374789	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374789	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374790	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374790	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374794	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374794	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374788	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374788	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000466092	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000466092	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374776	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374776	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000340077	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000340077	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000544292	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000544292	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374773	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000374773	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000374768	ENST00000353265		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000374768	ENST00000470488		TCGA	LD	OV	TCGA-61-1737-01A	PARD3	chr10	34985246	-	PARD6G	chr18	77960815	-
In-frame	ENST00000285238	ENST00000259021		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000285238	ENST00000454930		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000285238	ENST00000509773		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000285238	ENST00000510819		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000285238	ENST00000424009		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000285238	ENST00000503935		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000285238	ENST00000435742		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000285238	ENST00000513980		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000259021		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000454930		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000509773		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000510819		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000424009		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000503935		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000515707	ENST00000435742		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000515707	ENST00000513980		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000259021		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000454930		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000509773		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000510819		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000424009		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000503935		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
In-frame	ENST00000427699	ENST00000435742		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
5CDS-3UTR	ENST00000427699	ENST00000513980		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000259021		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000454930		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000509773		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000510819		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000424009		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000503935		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3CDS	ENST00000510891	ENST00000435742		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
intron-3UTR	ENST00000510891	ENST00000513980		TCGA	LD	OV	TCGA-61-1738-01A	ABCC3	chr17	48712342	+	KAT7	chr17	47893165	+
3UTR-3CDS	ENST00000247087	ENST00000361157		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
3UTR-3CDS	ENST00000247087	ENST00000339145		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
3UTR-3CDS	ENST00000247087	ENST00000362020		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
3UTR-3CDS	ENST00000374011	ENST00000361157		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
3UTR-3CDS	ENST00000374011	ENST00000339145		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
3UTR-3CDS	ENST00000374011	ENST00000362020		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
intron-3CDS	ENST00000480033	ENST00000361157		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
intron-3CDS	ENST00000480033	ENST00000339145		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
intron-3CDS	ENST00000480033	ENST00000362020		TCGA	LD	OV	TCGA-61-1738-01A	AHDC1	chr1	27873772	-	IFI6	chr1	27992986	-
5UTR-3CDS	ENST00000359979	ENST00000372134		TCGA	LD	OV	TCGA-61-1738-01A	CCSER2	chr10	86088564	+	GHITM	chr10	85910465	+
5UTR-3CDS	ENST00000372088	ENST00000372134		TCGA	LD	OV	TCGA-61-1738-01A	CCSER2	chr10	86088564	+	GHITM	chr10	85910465	+
5UTR-3CDS	ENST00000224756	ENST00000372134		TCGA	LD	OV	TCGA-61-1738-01A	CCSER2	chr10	86088564	+	GHITM	chr10	85910465	+
intron-3CDS	ENST00000494144	ENST00000372134		TCGA	LD	OV	TCGA-61-1738-01A	CCSER2	chr10	86088564	+	GHITM	chr10	85910465	+
intron-3CDS	ENST00000543283	ENST00000372134		TCGA	LD	OV	TCGA-61-1738-01A	CCSER2	chr10	86088564	+	GHITM	chr10	85910465	+
5CDS-5UTR	ENST00000264010	ENST00000328089		TCGA	LD	OV	TCGA-61-1738-01A	CTCF	chr16	67655494	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000264010	ENST00000357898		TCGA	LD	OV	TCGA-61-1738-01A	CTCF	chr16	67655494	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000264010	ENST00000377399		TCGA	LD	OV	TCGA-61-1738-01A	CTCF	chr16	67655494	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000401394	ENST00000328089		TCGA	LD	OV	TCGA-61-1738-01A	CTCF	chr16	67655494	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000401394	ENST00000357898		TCGA	LD	OV	TCGA-61-1738-01A	CTCF	chr16	67655494	+	SPSB1	chr1	9415802	+
5CDS-5UTR	ENST00000401394	ENST00000377399		TCGA	LD	OV	TCGA-61-1738-01A	CTCF	chr16	67655494	+	SPSB1	chr1	9415802	+
In-frame	ENST00000585892	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000585892	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000585892	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000314646	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000314646	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000359692	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000359692	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000389253	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000389253	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000355667	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000355667	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
In-frame	ENST00000408974	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000408974	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000592685		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000380702		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000352831		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000293683		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000591819	ENST00000440014		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000591819	ENST00000344979		TCGA	LD	OV	TCGA-61-1738-01A	DNM2	chr19	10829079	+	PDE4A	chr19	10556894	+
5CDS-5UTR	ENST00000607838	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000607838	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000607838	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000607838	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000607838	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000607838	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000607838	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000591724	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000591724	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000591724	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000591724	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000591724	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000591724	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-intron	ENST00000591724	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000332065	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000332065	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000332065	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000332065	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000332065	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000332065	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000332065	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000589210	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000589210	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000589210	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000589210	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000589210	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000589210	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000589210	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000335146	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000335146	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000335146	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000335146	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000335146	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000335146	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000335146	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000467929	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000467929	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000467929	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000467929	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000467929	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000467929	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000467929	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000405575	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000405575	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000405575	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000405575	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000405575	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000405575	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000405575	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000411744	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000411744	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000411744	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000411744	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000411744	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-5UTR	ENST00000411744	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
5CDS-intron	ENST00000411744	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000406660	ENST00000419336		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000406660	ENST00000241069		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000406660	ENST00000428317		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000406660	ENST00000302913		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000406660	ENST00000412389		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-5UTR	ENST00000406660	ENST00000411582		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-intron	ENST00000406660	ENST00000497647		TCGA	LD	OV	TCGA-61-1738-01A	EXOC7	chr17	74083735	-	ACHE	chr7	100491876	-
intron-3CDS	ENST00000460736	ENST00000233575		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-intron	ENST00000460736	ENST00000543024		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-intron	ENST00000460736	ENST00000537606		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-5UTR	ENST00000460736	ENST00000542478		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-3CDS	ENST00000379619	ENST00000233575		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-intron	ENST00000379619	ENST00000543024		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-intron	ENST00000379619	ENST00000537606		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-5UTR	ENST00000379619	ENST00000542478		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
In-frame	ENST00000264716	ENST00000233575		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
5CDS-intron	ENST00000264716	ENST00000543024		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
5CDS-intron	ENST00000264716	ENST00000537606		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
5CDS-5UTR	ENST00000264716	ENST00000542478		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-3CDS	ENST00000545753	ENST00000233575		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-intron	ENST00000545753	ENST00000543024		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-intron	ENST00000545753	ENST00000537606		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-5UTR	ENST00000545753	ENST00000542478		TCGA	LD	OV	TCGA-61-1738-01A	FOSL2	chr2	28616689	+	SNX17	chr2	27594136	+
intron-3CDS	ENST00000426327	ENST00000265755		TCGA	LD	OV	TCGA-61-1738-01A	GATSL2	chr7	74434317	+	GTF2IRD1	chr7	73969504	+
intron-3CDS	ENST00000426327	ENST00000455841		TCGA	LD	OV	TCGA-61-1738-01A	GATSL2	chr7	74434317	+	GTF2IRD1	chr7	73969504	+
intron-3CDS	ENST00000426327	ENST00000424337		TCGA	LD	OV	TCGA-61-1738-01A	GATSL2	chr7	74434317	+	GTF2IRD1	chr7	73969504	+
intron-3CDS	ENST00000426327	ENST00000476977		TCGA	LD	OV	TCGA-61-1738-01A	GATSL2	chr7	74434317	+	GTF2IRD1	chr7	73969504	+
intron-3UTR	ENST00000426327	ENST00000489094		TCGA	LD	OV	TCGA-61-1738-01A	GATSL2	chr7	74434317	+	GTF2IRD1	chr7	73969504	+
intron-3CDS	ENST00000604609	ENST00000262811		TCGA	LD	OV	TCGA-61-1738-01A	GDF15	chr19	18497276	+	MAST3	chr19	18260001	+
intron-intron	ENST00000604609	ENST00000608648		TCGA	LD	OV	TCGA-61-1738-01A	GDF15	chr19	18497276	+	MAST3	chr19	18260001	+
Frame-shit	ENST00000252809	ENST00000262811		TCGA	LD	OV	TCGA-61-1738-01A	GDF15	chr19	18497276	+	MAST3	chr19	18260001	+
5CDS-intron	ENST00000252809	ENST00000608648		TCGA	LD	OV	TCGA-61-1738-01A	GDF15	chr19	18497276	+	MAST3	chr19	18260001	+
5UTR-3CDS	ENST00000393684	ENST00000216484		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
5UTR-intron	ENST00000393684	ENST00000556264		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
In-frame	ENST00000342219	ENST00000216484		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
5CDS-intron	ENST00000342219	ENST00000556264		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
In-frame	ENST00000412904	ENST00000216484		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
5CDS-intron	ENST00000412904	ENST00000556264		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
In-frame	ENST00000429906	ENST00000216484		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
5CDS-intron	ENST00000429906	ENST00000556264		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
In-frame	ENST00000493585	ENST00000216484		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
5CDS-intron	ENST00000493585	ENST00000556264		TCGA	LD	OV	TCGA-61-1738-01A	ISM2	chr14	77964996	-	SPTLC2	chr14	78063723	-
In-frame	ENST00000356175	ENST00000216225		TCGA	LD	OV	TCGA-61-1738-01A	NF1	chr17	29422387	+	RBX1	chr22	41349559	+
In-frame	ENST00000358273	ENST00000216225		TCGA	LD	OV	TCGA-61-1738-01A	NF1	chr17	29422387	+	RBX1	chr22	41349559	+
In-frame	ENST00000431387	ENST00000216225		TCGA	LD	OV	TCGA-61-1738-01A	NF1	chr17	29422387	+	RBX1	chr22	41349559	+
intron-3CDS	ENST00000581113	ENST00000216225		TCGA	LD	OV	TCGA-61-1738-01A	NF1	chr17	29422387	+	RBX1	chr22	41349559	+
intron-3CDS	ENST00000417592	ENST00000216225		TCGA	LD	OV	TCGA-61-1738-01A	NF1	chr17	29422387	+	RBX1	chr22	41349559	+
intron-3CDS	ENST00000444181	ENST00000216225		TCGA	LD	OV	TCGA-61-1738-01A	NF1	chr17	29422387	+	RBX1	chr22	41349559	+
5CDS-5UTR	ENST00000420826	ENST00000353107		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000420826	ENST00000522439		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
5CDS-3UTR	ENST00000420826	ENST00000519765		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000314523	ENST00000353107		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000314523	ENST00000522439		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
5CDS-3UTR	ENST00000314523	ENST00000519765		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000578238	ENST00000353107		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000578238	ENST00000522439		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000578238	ENST00000519765		TCGA	LD	OV	TCGA-61-1738-01A	SUMO2	chr17	73178909	-	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000278601	ENST00000528125		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000278601	ENST00000260276		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000278601	ENST00000530214		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000278601	ENST00000529270		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
3UTR-5UTR	ENST00000527286	ENST00000528125		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
3UTR-5UTR	ENST00000527286	ENST00000260276		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
3UTR-5UTR	ENST00000527286	ENST00000530214		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
3UTR-5UTR	ENST00000527286	ENST00000529270		TCGA	LD	OV	TCGA-61-1740-01A	C11orf52	chr11	111789728	+	C11orf1	chr11	111753092	+
5CDS-5UTR	ENST00000589876	ENST00000317683		TCGA	LD	OV	TCGA-61-1740-01A	EML2	chr19	46120888	-	FBXO46	chr19	46216831	-
5CDS-5UTR	ENST00000245925	ENST00000317683		TCGA	LD	OV	TCGA-61-1740-01A	EML2	chr19	46120888	-	FBXO46	chr19	46216831	-
5CDS-5UTR	ENST00000536630	ENST00000317683		TCGA	LD	OV	TCGA-61-1740-01A	EML2	chr19	46120888	-	FBXO46	chr19	46216831	-
5CDS-5UTR	ENST00000587152	ENST00000317683		TCGA	LD	OV	TCGA-61-1740-01A	EML2	chr19	46120888	-	FBXO46	chr19	46216831	-
intron-5UTR	ENST00000586902	ENST00000317683		TCGA	LD	OV	TCGA-61-1740-01A	EML2	chr19	46120888	-	FBXO46	chr19	46216831	-
In-frame	ENST00000263253	ENST00000520753		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
In-frame	ENST00000263253	ENST00000521613		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
In-frame	ENST00000263253	ENST00000519940		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000519332		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000520007		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000600800		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000357778		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000391898		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000359009		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000447740		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000520153		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000520015		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5CDS-intron	ENST00000263253	ENST00000522431		TCGA	LD	OV	TCGA-61-1740-01A	EP300	chr22	41489102	+	CARD8	chr19	48718641	-
5UTR-3CDS	ENST00000261681	ENST00000414007		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3CDS	ENST00000261681	ENST00000419187		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3UTR	ENST00000261681	ENST00000471256		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3CDS	ENST00000555925	ENST00000414007		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3CDS	ENST00000555925	ENST00000419187		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3UTR	ENST00000555925	ENST00000471256		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
3UTR-3CDS	ENST00000554911	ENST00000414007		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
3UTR-3CDS	ENST00000554911	ENST00000419187		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
3UTR-3UTR	ENST00000554911	ENST00000471256		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3CDS	ENST00000556345	ENST00000414007		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3CDS	ENST00000556345	ENST00000419187		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
5UTR-3UTR	ENST00000556345	ENST00000471256		TCGA	LD	OV	TCGA-61-1740-01A	MPP5	chr14	67708250	+	SRGAP2	chr1	206623731	+
In-frame	ENST00000601806	ENST00000370549		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000601806	ENST00000370552		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000601806	ENST00000370546		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000601806	ENST00000404542		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000291281	ENST00000370549		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000291281	ENST00000370552		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000291281	ENST00000370546		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000291281	ENST00000404542		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000433867	ENST00000370549		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000433867	ENST00000370552		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000433867	ENST00000370546		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
Frame-shit	ENST00000433867	ENST00000404542		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000600194	ENST00000370549		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000600194	ENST00000370552		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000600194	ENST00000370546		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
In-frame	ENST00000600194	ENST00000404542		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000595515	ENST00000370549		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000595515	ENST00000370552		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000595515	ENST00000370546		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000595515	ENST00000404542		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000593492	ENST00000370549		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000593492	ENST00000370552		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000593492	ENST00000370546		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
intron-3CDS	ENST00000593492	ENST00000404542		TCGA	LD	OV	TCGA-61-1740-01A	PRKD2	chr19	47181653	-	HPSE2	chr10	100249953	-
5UTR-3CDS	ENST00000474528	ENST00000290536		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5UTR-3CDS	ENST00000474528	ENST00000409585		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5UTR-3CDS	ENST00000474528	ENST00000536235		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5UTR-intron	ENST00000474528	ENST00000358434		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5UTR-5UTR	ENST00000474528	ENST00000464686		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
In-frame	ENST00000272433	ENST00000290536		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
In-frame	ENST00000272433	ENST00000409585		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
In-frame	ENST00000272433	ENST00000536235		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5CDS-intron	ENST00000272433	ENST00000358434		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5CDS-5UTR	ENST00000272433	ENST00000464686		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
In-frame	ENST00000410065	ENST00000290536		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
In-frame	ENST00000410065	ENST00000409585		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
In-frame	ENST00000410065	ENST00000536235		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5CDS-intron	ENST00000410065	ENST00000358434		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
5CDS-5UTR	ENST00000410065	ENST00000464686		TCGA	LD	OV	TCGA-61-1740-01A	SFXN5	chr2	73226078	-	M1AP	chr2	74789550	-
Frame-shit	ENST00000393651	ENST00000356362		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
Frame-shit	ENST00000393651	ENST00000469408		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
intron-3CDS	ENST00000357311	ENST00000356362		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
intron-3CDS	ENST00000357311	ENST00000469408		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
intron-3CDS	ENST00000489828	ENST00000356362		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
intron-3CDS	ENST00000489828	ENST00000469408		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
intron-3CDS	ENST00000493638	ENST00000356362		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
intron-3CDS	ENST00000493638	ENST00000469408		TCGA	LD	OV	TCGA-61-1740-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105103197	-
5CDS-intron	ENST00000367590	ENST00000530124		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000367590	ENST00000257247		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000367590	ENST00000525875		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000367590	ENST00000378024		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000367589	ENST00000530124		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000367589	ENST00000257247		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000367589	ENST00000525875		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-intron	ENST00000367589	ENST00000378024		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
intron-intron	ENST00000467345	ENST00000530124		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
intron-intron	ENST00000467345	ENST00000257247		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
intron-5UTR	ENST00000467345	ENST00000525875		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
intron-intron	ENST00000467345	ENST00000378024		TCGA	LD	OV	TCGA-61-1740-01A	XPR1	chr1	180601406	+	AHNAK	chr11	62259303	-
5CDS-5UTR	ENST00000326799	ENST00000331737		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000361310		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000413025		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000436087		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000452305		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000442986		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000538351		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000326799	ENST00000375311		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-intron	ENST00000326799	ENST00000444692		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000331737		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000361310		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000413025		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000436087		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000452305		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000442986		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000538351		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000376016	ENST00000375311		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-intron	ENST00000376016	ENST00000444692		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000331737		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000361310		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000413025		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000436087		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000452305		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000442986		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000538351		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000375972	ENST00000375311		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-intron	ENST00000375972	ENST00000444692		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000331737		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000361310		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000413025		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000436087		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000452305		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000442986		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000538351		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-5UTR	ENST00000463270	ENST00000375311		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
intron-intron	ENST00000463270	ENST00000444692		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000331737		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000361310		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000413025		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000436087		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000452305		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000442986		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000538351		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-5UTR	ENST00000477432	ENST00000375311		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
5CDS-intron	ENST00000477432	ENST00000444692		TCGA	LD	OV	TCGA-61-1740-01A	YME1L1	chr10	27437835	-	ZNF438	chr10	31197944	-
In-frame	ENST00000349714	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
In-frame	ENST00000359226	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
In-frame	ENST00000374384	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
In-frame	ENST00000374380	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
In-frame	ENST00000374385	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
Frame-shit	ENST00000374377	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
In-frame	ENST00000397556	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
In-frame	ENST00000407996	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
Frame-shit	ENST00000540457	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
intron-3CDS	ENST00000542501	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
intron-3CDS	ENST00000397554	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
intron-3CDS	ENST00000491125	ENST00000246186		TCGA	LD	OV	TCGA-61-1741-01A	UQCC1	chr20	33894469	-	MMP24	chr20	33834643	+
5CDS-intron	ENST00000310803	ENST00000330458		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000310803	ENST00000535805		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000310803	ENST00000535592		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000310803	ENST00000394453		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000310803	ENST00000592614		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000310803	ENST00000341264		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000310803	ENST00000588834		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000330458		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000535805		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000535592		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000394453		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000592614		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000341264		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000539159	ENST00000588834		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000330458		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000535805		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000535592		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000394453		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000592614		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000341264		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000561180	ENST00000588834		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000330458		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000535805		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000535592		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000394453		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000592614		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000341264		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000450598	ENST00000588834		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000330458		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000535805		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000535592		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000394453		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000592614		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000341264		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000558164	ENST00000588834		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000330458		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000535805		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000535592		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000394453		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000592614		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000341264		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
5CDS-intron	ENST00000559830	ENST00000588834		TCGA	LD	OV	TCGA-61-1743-01A	RASGRP1	chr15	38852022	-	TBC1D3G	chr17	36347082	+
Frame-shit	ENST00000215790	ENST00000403222		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000215790	ENST00000407373		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000215790	ENST00000332585		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000215790	ENST00000382310		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000215790	ENST00000446658		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000215790	ENST00000401475		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000215790	ENST00000437268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000215790	ENST00000535268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000215790	ENST00000496575		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000403477	ENST00000403222		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000403477	ENST00000407373		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000403477	ENST00000332585		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000403477	ENST00000382310		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
Frame-shit	ENST00000403477	ENST00000446658		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000403477	ENST00000401475		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-5UTR	ENST00000403477	ENST00000437268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000403477	ENST00000535268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000403477	ENST00000496575		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000403362	ENST00000403222		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000403362	ENST00000407373		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000403362	ENST00000332585		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000403362	ENST00000382310		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000403362	ENST00000446658		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000403362	ENST00000401475		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000403362	ENST00000437268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000403362	ENST00000535268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
intron-intron	ENST00000403362	ENST00000496575		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000490449	ENST00000403222		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000490449	ENST00000407373		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000490449	ENST00000332585		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000490449	ENST00000382310		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000490449	ENST00000446658		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000490449	ENST00000401475		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000490449	ENST00000437268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000490449	ENST00000535268		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000490449	ENST00000496575		TCGA	LD	OV	TCGA-61-1743-01A	TBC1D10A	chr22	30722662	-	OSBP2	chr22	31266416	+
In-frame	ENST00000211998	ENST00000604729		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000211998	ENST00000603114		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000211998	ENST00000604524		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000211998	ENST00000605216		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000211998	ENST00000398706		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
5CDS-3UTR	ENST00000211998	ENST00000431225		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000372755	ENST00000604729		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000372755	ENST00000603114		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000372755	ENST00000604524		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000372755	ENST00000605216		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000372755	ENST00000398706		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
5CDS-3UTR	ENST00000372755	ENST00000431225		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
3UTR-3CDS	ENST00000478896	ENST00000604729		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
3UTR-3CDS	ENST00000478896	ENST00000603114		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
3UTR-3CDS	ENST00000478896	ENST00000604524		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
3UTR-3CDS	ENST00000478896	ENST00000605216		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
3UTR-3CDS	ENST00000478896	ENST00000398706		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
3UTR-3UTR	ENST00000478896	ENST00000431225		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000417648	ENST00000604729		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000417648	ENST00000603114		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000417648	ENST00000604524		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000417648	ENST00000605216		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
In-frame	ENST00000417648	ENST00000398706		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
5CDS-3UTR	ENST00000417648	ENST00000431225		TCGA	LD	OV	TCGA-61-1743-01A	VCL	chr10	75758133	+	ZSWIM8	chr10	75553346	+
Frame-shit	ENST00000283429	ENST00000321728		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-3UTR	ENST00000283429	ENST00000303531		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000283429	ENST00000482000		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000283429	ENST00000498058		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
In-frame	ENST00000574733	ENST00000321728		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-3UTR	ENST00000574733	ENST00000303531		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000574733	ENST00000482000		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000574733	ENST00000498058		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
Frame-shit	ENST00000404295	ENST00000321728		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-3UTR	ENST00000404295	ENST00000303531		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000404295	ENST00000482000		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000404295	ENST00000498058		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
In-frame	ENST00000574425	ENST00000321728		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-3UTR	ENST00000574425	ENST00000303531		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000574425	ENST00000482000		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-intron	ENST00000574425	ENST00000498058		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5UTR-3CDS	ENST00000572391	ENST00000321728		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5UTR-3UTR	ENST00000572391	ENST00000303531		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5UTR-intron	ENST00000572391	ENST00000482000		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5UTR-intron	ENST00000572391	ENST00000498058		TCGA	LD	OV	TCGA-61-1907-01A	NMRAL1	chr16	4516154	-	PRKCB	chr16	24231282	+
5CDS-3UTR	ENST00000318999	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000318999	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000318999	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000318999	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000318999	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000318999	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-3UTR	ENST00000376478	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376478	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376478	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376478	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376478	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376478	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-3UTR	ENST00000376485	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376485	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376485	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376485	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376485	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376485	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-3UTR	ENST00000319027	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000319027	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000319027	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000319027	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000319027	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000319027	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-3UTR	ENST00000376483	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376483	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376483	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376483	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376483	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000376483	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-3UTR	ENST00000329992	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000329992	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000329992	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000329992	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000329992	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000329992	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-3UTR	ENST00000330083	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000330083	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000330083	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000330083	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000330083	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
5CDS-intron	ENST00000330083	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
3UTR-3UTR	ENST00000468713	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
3UTR-intron	ENST00000468713	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
3UTR-intron	ENST00000468713	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
3UTR-intron	ENST00000468713	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
3UTR-intron	ENST00000468713	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
3UTR-intron	ENST00000468713	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000423338	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423338	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423338	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423338	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423338	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423338	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000553093	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553093	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553093	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553093	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553093	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553093	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000445486	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445486	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445486	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445486	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445486	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445486	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000424121	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000424121	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000424121	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000424121	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000424121	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000424121	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000457161	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457161	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457161	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457161	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457161	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457161	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000450003	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450003	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450003	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450003	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450003	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450003	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000425448	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000425448	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000425448	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000425448	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000425448	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000425448	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000489189	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000489189	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000489189	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000489189	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000489189	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000489189	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000443114	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443114	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443114	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443114	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443114	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443114	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000553018	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553018	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553018	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553018	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553018	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000553018	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000454794	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454794	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454794	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454794	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454794	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454794	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000443391	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443391	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443391	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443391	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443391	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000443391	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000446100	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000446100	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000446100	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000446100	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000446100	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000446100	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000456704	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456704	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456704	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456704	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456704	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456704	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000448670	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000448670	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000448670	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000448670	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000448670	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000448670	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000481303	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000481303	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000481303	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000481303	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000481303	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000481303	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000417183	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000417183	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000417183	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000417183	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000417183	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000417183	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000546440	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000546440	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000546440	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000546440	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000546440	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000546440	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000420586	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000420586	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000420586	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000420586	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000420586	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000420586	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000445973	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445973	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445973	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445973	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445973	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000445973	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000418248	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000418248	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000418248	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000418248	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000418248	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000418248	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000450220	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450220	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450220	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450220	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450220	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000450220	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000432643	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432643	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432643	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432643	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432643	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432643	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000490845	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000490845	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000490845	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000490845	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000490845	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000490845	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000383584	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383584	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383584	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383584	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383584	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383584	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000551737	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000551737	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000551737	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000551737	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000551737	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000551737	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000383585	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383585	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383585	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383585	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383585	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383585	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000400576	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400576	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400576	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400576	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400576	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400576	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000400575	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400575	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400575	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400575	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400575	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000400575	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000383582	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383582	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383582	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383582	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383582	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000383582	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000479580	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000479580	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000479580	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000479580	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000479580	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000479580	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000449905	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000449905	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000449905	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000449905	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000449905	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000449905	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000547124	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000547124	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000547124	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000547124	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000547124	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000547124	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000442844	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000442844	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000442844	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000442844	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000442844	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000442844	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000430611	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000430611	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000430611	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000430611	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000430611	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000430611	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000423654	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423654	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423654	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423654	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423654	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000423654	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000428764	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000428764	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000428764	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000428764	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000428764	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000428764	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000416435	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416435	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416435	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416435	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416435	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416435	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000472552	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000472552	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000472552	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000472552	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000472552	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000472552	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000416917	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416917	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416917	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416917	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416917	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000416917	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000550031	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000550031	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000550031	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000550031	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000550031	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000550031	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000432356	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432356	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432356	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432356	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432356	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000432356	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000454987	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454987	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454987	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454987	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454987	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000454987	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000411724	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000411724	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000411724	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000411724	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000411724	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000411724	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000456215	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456215	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456215	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456215	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456215	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000456215	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000457334	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457334	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457334	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457334	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457334	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000457334	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-3UTR	ENST00000477838	ENST00000439406		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000477838	ENST00000431949		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000477838	ENST00000423317		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000477838	ENST00000437931		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000477838	ENST00000413396		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
intron-intron	ENST00000477838	ENST00000417629		TCGA	LD	OV	TCGA-61-1910-01A	ATAT1	chr6	30596207	+	HCG20	chr6	30756468	+
Frame-shit	ENST00000324288	ENST00000311172		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000324288	ENST00000409314		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000324288	ENST00000409418		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000324288	ENST00000458644		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000324288	ENST00000409853		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
5CDS-intron	ENST00000324288	ENST00000409263		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000381835	ENST00000311172		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000381835	ENST00000409314		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000381835	ENST00000409418		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000381835	ENST00000458644		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
Frame-shit	ENST00000381835	ENST00000409853		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
5CDS-intron	ENST00000381835	ENST00000409263		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
3UTR-3CDS	ENST00000537380	ENST00000311172		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
3UTR-3CDS	ENST00000537380	ENST00000409314		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
3UTR-3CDS	ENST00000537380	ENST00000409418		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
3UTR-3CDS	ENST00000537380	ENST00000458644		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
3UTR-3CDS	ENST00000537380	ENST00000409853		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
3UTR-intron	ENST00000537380	ENST00000409263		TCGA	LD	OV	TCGA-61-1910-01A	CIITA	chr16	10996658	+	FCHSD2	chr11	72632995	-
In-frame	ENST00000260327	ENST00000299957		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000260327	ENST00000360824		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000260327	ENST00000345795		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-intron	ENST00000260327	ENST00000429162		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
In-frame	ENST00000396780	ENST00000299957		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000396780	ENST00000360824		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000396780	ENST00000345795		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-intron	ENST00000396780	ENST00000429162		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
In-frame	ENST00000558966	ENST00000299957		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000558966	ENST00000360824		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000558966	ENST00000345795		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-intron	ENST00000558966	ENST00000429162		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
In-frame	ENST00000558373	ENST00000299957		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000558373	ENST00000360824		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-3UTR	ENST00000558373	ENST00000345795		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
5CDS-intron	ENST00000558373	ENST00000429162		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
intron-3CDS	ENST00000561189	ENST00000299957		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
intron-3UTR	ENST00000561189	ENST00000360824		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
intron-3UTR	ENST00000561189	ENST00000345795		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
intron-intron	ENST00000561189	ENST00000429162		TCGA	LD	OV	TCGA-61-1910-01A	CTDSPL2	chr15	44751398	+	CASC4	chr15	44705534	+
In-frame	ENST00000394901	ENST00000332830		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
In-frame	ENST00000394901	ENST00000577226		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
In-frame	ENST00000394901	ENST00000268756		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
5CDS-5UTR	ENST00000394901	ENST00000582655		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
In-frame	ENST00000378895	ENST00000332830		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
In-frame	ENST00000378895	ENST00000577226		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
In-frame	ENST00000378895	ENST00000268756		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
5CDS-5UTR	ENST00000378895	ENST00000582655		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-3CDS	ENST00000426464	ENST00000332830		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-3CDS	ENST00000426464	ENST00000577226		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-3CDS	ENST00000426464	ENST00000268756		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-5UTR	ENST00000426464	ENST00000582655		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-3CDS	ENST00000581974	ENST00000332830		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-3CDS	ENST00000581974	ENST00000577226		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-3CDS	ENST00000581974	ENST00000268756		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
intron-5UTR	ENST00000581974	ENST00000582655		TCGA	LD	OV	TCGA-61-1910-01A	DHRS13	chr17	27229601	-	PHF12	chr17	27241055	-
5CDS-5UTR	ENST00000457167	ENST00000593209		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5CDS-5UTR	ENST00000457167	ENST00000301671		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5CDS-5UTR	ENST00000457167	ENST00000414034		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5CDS-5UTR	ENST00000457167	ENST00000587427		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5CDS-5UTR	ENST00000457167	ENST00000428494		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5CDS-5UTR	ENST00000457167	ENST00000436923		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5CDS-5UTR	ENST00000457167	ENST00000590520		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000593209		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000301671		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000414034		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000587427		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000428494		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000436923		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000426588	ENST00000590520		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000593209		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000301671		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000414034		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000587427		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000428494		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000436923		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
5UTR-5UTR	ENST00000316603	ENST00000590520		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000593209		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000301671		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000414034		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000587427		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000428494		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000436923		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
intron-5UTR	ENST00000589547	ENST00000590520		TCGA	LD	OV	TCGA-61-1910-01A	DNAJC7	chr17	40169358	-	GHDC	chr17	40345868	-
Frame-shit	ENST00000520367	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000520367	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000520367	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000520367	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000520367	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000520367	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
Frame-shit	ENST00000518137	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518137	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518137	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518137	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518137	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000518137	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3CDS	ENST00000523999	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000523999	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000523999	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000523999	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000523999	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3UTR	ENST00000523999	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
In-frame	ENST00000323854	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000323854	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000323854	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000323854	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000323854	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000323854	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
Frame-shit	ENST00000522751	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000522751	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000522751	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000522751	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000522751	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000522751	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3CDS	ENST00000520284	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000520284	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000520284	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000520284	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000520284	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3UTR	ENST00000520284	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
Frame-shit	ENST00000517795	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517795	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517795	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517795	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517795	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000517795	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3CDS	ENST00000518907	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518907	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518907	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518907	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518907	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3UTR	ENST00000518907	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3CDS	ENST00000521847	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000521847	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000521847	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000521847	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000521847	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3UTR	ENST00000521847	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3CDS	ENST00000518644	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518644	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518644	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518644	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-intron	ENST00000518644	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
intron-3UTR	ENST00000518644	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
Frame-shit	ENST00000518901	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518901	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518901	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518901	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000518901	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000518901	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
Frame-shit	ENST00000517295	ENST00000508628		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517295	ENST00000456466		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517295	ENST00000582970		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517295	ENST00000319921		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-intron	ENST00000517295	ENST00000336301		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
5CDS-3UTR	ENST00000517295	ENST00000427003		TCGA	LD	OV	TCGA-61-1910-01A	ENDOV	chr17	78403631	+	RNF213	chr17	78362412	+
Frame-shit	ENST00000376959	ENST00000253719		TCGA	LD	OV	TCGA-61-1910-01A	KCNC3	chr19	50831470	-	NAPSA	chr19	50865570	-
intron-3CDS	ENST00000391818	ENST00000253719		TCGA	LD	OV	TCGA-61-1910-01A	KCNC3	chr19	50831470	-	NAPSA	chr19	50865570	-
intron-3CDS	ENST00000474951	ENST00000253719		TCGA	LD	OV	TCGA-61-1910-01A	KCNC3	chr19	50831470	-	NAPSA	chr19	50865570	-
Frame-shit	ENST00000477616	ENST00000253719		TCGA	LD	OV	TCGA-61-1910-01A	KCNC3	chr19	50831470	-	NAPSA	chr19	50865570	-
Frame-shit	ENST00000423230	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000398656	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000534366	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000528919	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
Frame-shit	ENST00000326134	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000527071	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
intron-3CDS	ENST00000544576	ENST00000308249		TCGA	LD	OV	TCGA-61-1910-01A	MROH1	chr8	145223343	+	PPM1E	chr17	57033010	+
intron-intron	ENST00000264674	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000264674	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000264674	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000392736	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000392736	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000464456	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000464456	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000472280	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000472280	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-5UTR	ENST00000494292	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5CDS-intron	ENST00000494292	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000468789	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000468789	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000460814	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000460814	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-5UTR	ENST00000433243	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
intron-intron	ENST00000433243	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000316428		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-5UTR	ENST00000485957	ENST00000264676		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000523069		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
5UTR-intron	ENST00000485957	ENST00000397805		TCGA	LD	OV	TCGA-61-1911-01A	MECOM	chr3	169381124	-	LRRC31	chr3	169587660	-
In-frame	ENST00000353088	ENST00000313640		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000353088	ENST00000313624		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000353088	ENST00000398762		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5CDS-5UTR	ENST00000353088	ENST00000476830		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000476071	ENST00000313640		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000476071	ENST00000313624		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000476071	ENST00000398762		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5CDS-5UTR	ENST00000476071	ENST00000476830		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000216879	ENST00000313640		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000216879	ENST00000313624		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000216879	ENST00000398762		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5CDS-5UTR	ENST00000216879	ENST00000476830		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000381658	ENST00000313640		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000381658	ENST00000313624		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000381658	ENST00000398762		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5CDS-5UTR	ENST00000381658	ENST00000476830		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000350991	ENST00000313640		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000350991	ENST00000313624		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000350991	ENST00000398762		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5CDS-5UTR	ENST00000350991	ENST00000476830		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5UTR-3CDS	ENST00000461211	ENST00000313640		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5UTR-3CDS	ENST00000461211	ENST00000313624		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5UTR-3CDS	ENST00000461211	ENST00000398762		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
5UTR-5UTR	ENST00000461211	ENST00000476830		TCGA	LD	OV	TCGA-61-1911-01A	NSFL1C	chr20	1435612	-	EPSTI1	chr13	43528157	-
In-frame	ENST00000353533	ENST00000226209		TCGA	LD	OV	TCGA-61-1914-01A	MAP2K4	chr17	11924318	+	MYH3	chr17	10539170	-
In-frame	ENST00000353533	ENST00000583535		TCGA	LD	OV	TCGA-61-1914-01A	MAP2K4	chr17	11924318	+	MYH3	chr17	10539170	-
In-frame	ENST00000415385	ENST00000226209		TCGA	LD	OV	TCGA-61-1914-01A	MAP2K4	chr17	11924318	+	MYH3	chr17	10539170	-
In-frame	ENST00000415385	ENST00000583535		TCGA	LD	OV	TCGA-61-1914-01A	MAP2K4	chr17	11924318	+	MYH3	chr17	10539170	-
intron-3CDS	ENST00000581941	ENST00000226209		TCGA	LD	OV	TCGA-61-1914-01A	MAP2K4	chr17	11924318	+	MYH3	chr17	10539170	-
intron-3CDS	ENST00000581941	ENST00000583535		TCGA	LD	OV	TCGA-61-1914-01A	MAP2K4	chr17	11924318	+	MYH3	chr17	10539170	-
5UTR-3CDS	ENST00000291572	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
5UTR-3CDS	ENST00000398061	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
5UTR-3CDS	ENST00000327505	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
intron-3CDS	ENST00000398063	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
intron-3CDS	ENST00000398058	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
intron-3CDS	ENST00000546158	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
intron-3CDS	ENST00000479117	ENST00000301466		TCGA	LD	OV	TCGA-61-1917-01A	AGPAT3	chr21	45323900	+	SOAT2	chr12	53509881	+
intron-5UTR	ENST00000246533	ENST00000221855		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000246533	ENST00000392178		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000246533	ENST00000589996		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000246533	ENST00000585746		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000246533	ENST00000586868		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-5UTR	ENST00000589146	ENST00000221855		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000589146	ENST00000392178		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000589146	ENST00000589996		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000589146	ENST00000585746		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000589146	ENST00000586868		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-5UTR	ENST00000587718	ENST00000221855		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000587718	ENST00000392178		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000587718	ENST00000589996		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000587718	ENST00000585746		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000587718	ENST00000586868		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-5UTR	ENST00000590874	ENST00000221855		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000590874	ENST00000392178		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000590874	ENST00000589996		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000590874	ENST00000585746		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000590874	ENST00000586868		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-5UTR	ENST00000588815	ENST00000221855		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588815	ENST00000392178		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588815	ENST00000589996		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588815	ENST00000585746		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588815	ENST00000586868		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-5UTR	ENST00000588780	ENST00000221855		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588780	ENST00000392178		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588780	ENST00000589996		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588780	ENST00000585746		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
intron-intron	ENST00000588780	ENST00000586868		TCGA	LD	OV	TCGA-61-1917-01A	CAPNS1	chr19	36631484	+	TBCB	chr19	36605954	+
Frame-shit	ENST00000262189	ENST00000431418		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
Frame-shit	ENST00000262189	ENST00000392800		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
5CDS-3UTR	ENST00000262189	ENST00000483959		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
Frame-shit	ENST00000355193	ENST00000431418		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
Frame-shit	ENST00000355193	ENST00000392800		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
5CDS-3UTR	ENST00000355193	ENST00000483959		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
intron-3CDS	ENST00000485655	ENST00000431418		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
intron-3CDS	ENST00000485655	ENST00000392800		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
intron-3UTR	ENST00000485655	ENST00000483959		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
intron-3CDS	ENST00000485241	ENST00000431418		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
intron-3CDS	ENST00000485241	ENST00000392800		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
intron-3UTR	ENST00000485241	ENST00000483959		TCGA	LD	OV	TCGA-61-1917-01A	KMT2C	chr7	152132711	-	GALNTL5	chr7	151699799	+
Frame-shit	ENST00000543571	ENST00000340413		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
Frame-shit	ENST00000543571	ENST00000460354		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-3UTR	ENST00000543571	ENST00000367403		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-3UTR	ENST00000543571	ENST00000367404		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-intron	ENST00000543571	ENST00000463048		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
Frame-shit	ENST00000253339	ENST00000340413		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
Frame-shit	ENST00000253339	ENST00000460354		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-3UTR	ENST00000253339	ENST00000367403		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-3UTR	ENST00000253339	ENST00000367404		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-intron	ENST00000253339	ENST00000463048		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5UTR-3CDS	ENST00000542747	ENST00000340413		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5UTR-3CDS	ENST00000542747	ENST00000460354		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5UTR-3UTR	ENST00000542747	ENST00000367403		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5UTR-3UTR	ENST00000542747	ENST00000367404		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5UTR-intron	ENST00000542747	ENST00000463048		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
Frame-shit	ENST00000392273	ENST00000340413		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
Frame-shit	ENST00000392273	ENST00000460354		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-3UTR	ENST00000392273	ENST00000367403		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-3UTR	ENST00000392273	ENST00000367404		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
5CDS-intron	ENST00000392273	ENST00000463048		TCGA	LD	OV	TCGA-61-1917-01A	LATS1	chr6	150022915	-	NUP43	chr6	150048334	-
In-frame	ENST00000377809	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000402010	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000413835	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
5UTR-3CDS	ENST00000377810	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000315032	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000508192	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000361128	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000350490	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
In-frame	ENST00000502399	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
intron-3CDS	ENST00000509502	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
intron-3CDS	ENST00000513765	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
intron-3CDS	ENST00000408948	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
intron-3CDS	ENST00000425897	ENST00000294244		TCGA	LD	OV	TCGA-61-1917-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63594400	+
intron-3CDS	ENST00000264674	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000264674	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000392736	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000392736	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000464456	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000464456	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000472280	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000472280	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
Frame-shit	ENST00000494292	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5CDS-intron	ENST00000494292	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000468789	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000468789	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000460814	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000460814	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000433243	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000433243	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5UTR-3CDS	ENST00000485957	ENST00000231706		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5UTR-intron	ENST00000485957	ENST00000466168		TCGA	LD	OV	TCGA-61-1917-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5UTR-intron	ENST00000426256	ENST00000463528		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000412277		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000331075		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000400294		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000404390		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000405300		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000402238		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000404453		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000426256	ENST00000401755		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000463528		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000412277		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000331075		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000400294		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000404390		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000405300		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000402238		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000404453		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000326132	ENST00000401755		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000463528		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000412277		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000331075		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000400294		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000404390		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000405300		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000402238		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000404453		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
5UTR-intron	ENST00000266252	ENST00000401755		TCGA	LD	OV	TCGA-61-1917-01A	RNF185	chr22	31556289	+	INPP5J	chr22	31529084	+
intron-3CDS	ENST00000414007	ENST00000294981		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-3CDS	ENST00000414007	ENST00000367103		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-intron	ENST00000414007	ENST00000479009		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-3CDS	ENST00000419187	ENST00000294981		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-3CDS	ENST00000419187	ENST00000367103		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-intron	ENST00000419187	ENST00000479009		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-3CDS	ENST00000471256	ENST00000294981		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-3CDS	ENST00000471256	ENST00000367103		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-intron	ENST00000471256	ENST00000479009		TCGA	LD	OV	TCGA-61-1917-01A	SRGAP2	chr1	206135293	+	MAPKAPK2	chr1	206904483	+
intron-5UTR	ENST00000409262	ENST00000409731		TCGA	LD	OV	TCGA-61-1917-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
intron-5UTR	ENST00000409262	ENST00000345517		TCGA	LD	OV	TCGA-61-1917-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
intron-5UTR	ENST00000409262	ENST00000409918		TCGA	LD	OV	TCGA-61-1917-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
intron-5UTR	ENST00000409262	ENST00000409624		TCGA	LD	OV	TCGA-61-1917-01A	TET3	chr2	74230293	+	ACTG2	chr2	74128403	+
5CDS-5UTR	ENST00000338677	ENST00000560609		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000338677	ENST00000258884		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000338677	ENST00000558464		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-3UTR	ENST00000338677	ENST00000559506		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000267938	ENST00000560609		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000267938	ENST00000258884		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000267938	ENST00000558464		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-3UTR	ENST00000267938	ENST00000559506		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000569423	ENST00000560609		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000569423	ENST00000258884		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-5UTR	ENST00000569423	ENST00000558464		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5CDS-3UTR	ENST00000569423	ENST00000559506		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-5UTR	ENST00000561851	ENST00000560609		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-5UTR	ENST00000561851	ENST00000258884		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-5UTR	ENST00000561851	ENST00000558464		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-3UTR	ENST00000561851	ENST00000559506		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-5UTR	ENST00000562635	ENST00000560609		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-5UTR	ENST00000562635	ENST00000258884		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-5UTR	ENST00000562635	ENST00000558464		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
intron-3UTR	ENST00000562635	ENST00000559506		TCGA	LD	OV	TCGA-61-1917-01A	UBE2Q2	chr15	76136187	+	ABHD17C	chr15	81041854	+
5UTR-3CDS	ENST00000377022	ENST00000354287		TCGA	LD	OV	TCGA-61-1918-01A	CASZ1	chr1	10765549	-	FBXO2	chr1	11710891	-
5UTR-5UTR	ENST00000377022	ENST00000475961		TCGA	LD	OV	TCGA-61-1918-01A	CASZ1	chr1	10765549	-	FBXO2	chr1	11710891	-
5UTR-3CDS	ENST00000344008	ENST00000354287		TCGA	LD	OV	TCGA-61-1918-01A	CASZ1	chr1	10765549	-	FBXO2	chr1	11710891	-
5UTR-5UTR	ENST00000344008	ENST00000475961		TCGA	LD	OV	TCGA-61-1918-01A	CASZ1	chr1	10765549	-	FBXO2	chr1	11710891	-
intron-3CDS	ENST00000478728	ENST00000354287		TCGA	LD	OV	TCGA-61-1918-01A	CASZ1	chr1	10765549	-	FBXO2	chr1	11710891	-
intron-5UTR	ENST00000478728	ENST00000475961		TCGA	LD	OV	TCGA-61-1918-01A	CASZ1	chr1	10765549	-	FBXO2	chr1	11710891	-
5UTR-intron	ENST00000258214	ENST00000564448		TCGA	LD	OV	TCGA-61-1918-01A	CCDC102A	chr16	57570412	-	CNGB1	chr16	57989272	-
5UTR-intron	ENST00000258214	ENST00000251102		TCGA	LD	OV	TCGA-61-1918-01A	CCDC102A	chr16	57570412	-	CNGB1	chr16	57989272	-
5UTR-intron	ENST00000258214	ENST00000564654		TCGA	LD	OV	TCGA-61-1918-01A	CCDC102A	chr16	57570412	-	CNGB1	chr16	57989272	-
5UTR-intron	ENST00000258214	ENST00000311183		TCGA	LD	OV	TCGA-61-1918-01A	CCDC102A	chr16	57570412	-	CNGB1	chr16	57989272	-
Frame-shit	ENST00000340437	ENST00000405837		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000340437	ENST00000433053		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000340437	ENST00000278893		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000340437	ENST00000360796		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000340437	ENST00000403550		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000340437	ENST00000407022		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000340437	ENST00000421906		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
5CDS-5UTR	ENST00000340437	ENST00000537604		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000405837		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000433053		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000278893		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000360796		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000403550		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000407022		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000394888	ENST00000421906		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
5CDS-5UTR	ENST00000394888	ENST00000537604		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000405837		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000433053		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000278893		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000360796		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000403550		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000407022		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000439958	ENST00000421906		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
5CDS-5UTR	ENST00000439958	ENST00000537604		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000405837		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000433053		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000278893		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000360796		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000403550		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000407022		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-3CDS	ENST00000494016	ENST00000421906		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
intron-5UTR	ENST00000494016	ENST00000537604		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000405837		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000433053		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000278893		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000360796		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000403550		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000407022		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000448745	ENST00000421906		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
5CDS-5UTR	ENST00000448745	ENST00000537604		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000405837		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000433053		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000278893		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000360796		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000403550		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000407022		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000541963	ENST00000421906		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
5CDS-5UTR	ENST00000541963	ENST00000537604		TCGA	LD	OV	TCGA-61-1918-01A	CPSF7	chr11	61196654	-	BSCL2	chr11	62470021	-
Frame-shit	ENST00000552983	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552983	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552983	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000549982		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000361630		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000552217		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000393128		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000547098		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000548545		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000552938		TCGA	LD	OV	TCGA-61-1918-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000368594	ENST00000368615		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368594	ENST00000392638		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000344079		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000356571		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368614		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368613		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368612		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368610		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000432555		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368594	ENST00000475747		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368615		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368593	ENST00000392638		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000344079		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000356571		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368614		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368613		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368612		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368610		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000432555		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368593	ENST00000475747		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368615		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-3UTR	ENST00000487614	ENST00000392638		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000344079		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000356571		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368614		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368613		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368612		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368610		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000432555		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
intron-3UTR	ENST00000487614	ENST00000475747		TCGA	LD	OV	TCGA-61-1918-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134174961	+
5CDS-5UTR	ENST00000325722	ENST00000309983		TCGA	LD	OV	TCGA-61-1918-01A	KIAA0319L	chr1	36019951	-	TPMT	chr6	18149402	-
intron-5UTR	ENST00000373266	ENST00000309983		TCGA	LD	OV	TCGA-61-1918-01A	KIAA0319L	chr1	36019951	-	TPMT	chr6	18149402	-
intron-5UTR	ENST00000485551	ENST00000309983		TCGA	LD	OV	TCGA-61-1918-01A	KIAA0319L	chr1	36019951	-	TPMT	chr6	18149402	-
intron-3CDS	ENST00000356120	ENST00000301729		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000356120	ENST00000562238		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-5UTR	ENST00000356120	ENST00000570258		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000354249	ENST00000301729		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000354249	ENST00000562238		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-5UTR	ENST00000354249	ENST00000570258		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000566005	ENST00000301729		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000566005	ENST00000562238		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-5UTR	ENST00000566005	ENST00000570258		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000397280	ENST00000301729		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-3CDS	ENST00000397280	ENST00000562238		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
intron-5UTR	ENST00000397280	ENST00000570258		TCGA	LD	OV	TCGA-61-1918-01A	NOXO1	chr16	2029247	-	ECI1	chr16	2296987	-
Frame-shit	ENST00000397061	ENST00000540746		TCGA	LD	OV	TCGA-61-1918-01A	NUDT19	chr19	33183580	+	LSM14A	chr19	34685383	+
Frame-shit	ENST00000397061	ENST00000544216		TCGA	LD	OV	TCGA-61-1918-01A	NUDT19	chr19	33183580	+	LSM14A	chr19	34685383	+
Frame-shit	ENST00000397061	ENST00000433627		TCGA	LD	OV	TCGA-61-1918-01A	NUDT19	chr19	33183580	+	LSM14A	chr19	34685383	+
In-frame	ENST00000458013	ENST00000335183		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000458013	ENST00000543789		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000458013	ENST00000442975		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000458013	ENST00000458126		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000458013	ENST00000556102		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000458013	ENST00000541304		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-3UTR	ENST00000458013	ENST00000556305		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-3UTR	ENST00000458013	ENST00000395577		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
In-frame	ENST00000368843	ENST00000335183		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000368843	ENST00000543789		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000368843	ENST00000442975		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000368843	ENST00000458126		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000368843	ENST00000556102		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-intron	ENST00000368843	ENST00000541304		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-3UTR	ENST00000368843	ENST00000556305		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-3UTR	ENST00000368843	ENST00000395577		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-3CDS	ENST00000368838	ENST00000335183		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000368838	ENST00000543789		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000368838	ENST00000442975		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000368838	ENST00000458126		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000368838	ENST00000556102		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000368838	ENST00000541304		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-3UTR	ENST00000368838	ENST00000556305		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-3UTR	ENST00000368838	ENST00000395577		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-3CDS	ENST00000482791	ENST00000335183		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000482791	ENST00000543789		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000482791	ENST00000442975		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000482791	ENST00000458126		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000482791	ENST00000556102		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-intron	ENST00000482791	ENST00000541304		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-3UTR	ENST00000482791	ENST00000556305		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
intron-3UTR	ENST00000482791	ENST00000395577		TCGA	LD	OV	TCGA-61-1918-01A	SNX27	chr1	151584988	+	CDKN3	chr14	54882617	+
5CDS-5UTR	ENST00000534894	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000534894	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000534894	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000534894	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000536810	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000536810	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000536810	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000536810	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000545257	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000545257	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000545257	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000545257	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000355995	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000355995	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000355995	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000355995	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000543371	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000543371	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000543371	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000543371	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000355717	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000355717	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000355717	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000355717	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000538897	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000538897	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000538897	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000538897	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000349937	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000349937	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000349937	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000349937	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000369397	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000369397	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000369397	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000369397	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000352065	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000352065	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000352065	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000352065	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000369395	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-intron	ENST00000369395	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000369395	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5CDS-5UTR	ENST00000369395	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000542695	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5UTR-intron	ENST00000542695	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000542695	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
5UTR-5UTR	ENST00000542695	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000369389	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-intron	ENST00000369389	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000369389	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000369389	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000369386	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-intron	ENST00000369386	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000369386	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000369386	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000466338	ENST00000216190		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-intron	ENST00000466338	ENST00000478547		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000466338	ENST00000541106		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
intron-5UTR	ENST00000466338	ENST00000405442		TCGA	LD	OV	TCGA-61-1918-01A	TCF7L2	chr10	114799885	+	EIF3D	chr22	36922178	-
Frame-shit	ENST00000440884	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000440884	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000440884	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000416682	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000416682	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000416682	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000429436	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000429436	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000429436	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000303622	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000303622	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000303622	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000216288	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000216288	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000216288	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000553942	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000553942	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000553942	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000335102	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
Frame-shit	ENST00000335102	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-5UTR	ENST00000335102	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
3UTR-3CDS	ENST00000561071	ENST00000381971		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
3UTR-3CDS	ENST00000561071	ENST00000324333		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
3UTR-5UTR	ENST00000561071	ENST00000461870		TCGA	LD	OV	TCGA-61-1919-01A	MARK3	chr14	103894777	+	GLIS3	chr9	3856184	-
5CDS-3UTR	ENST00000278590	ENST00000482399		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-3UTR	ENST00000278590	ENST00000445902		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-5UTR	ENST00000278590	ENST00000478934		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-5UTR	ENST00000278590	ENST00000436044		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000448042		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000488583		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000441058		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000471761		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000443860		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000483351		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000383210		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000489236		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000485418		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000421357		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000428608		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000278590	ENST00000484649		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-3UTR	ENST00000528673	ENST00000482399		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-3UTR	ENST00000528673	ENST00000445902		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-5UTR	ENST00000528673	ENST00000478934		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-5UTR	ENST00000528673	ENST00000436044		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000448042		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000488583		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000441058		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000471761		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000443860		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000483351		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000383210		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000489236		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000485418		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000421357		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000428608		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000528673	ENST00000484649		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-3UTR	ENST00000453089	ENST00000482399		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-3UTR	ENST00000453089	ENST00000445902		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-5UTR	ENST00000453089	ENST00000478934		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-5UTR	ENST00000453089	ENST00000436044		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000448042		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000488583		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000441058		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000471761		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000443860		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000483351		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000383210		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000489236		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000485418		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000421357		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000428608		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
5CDS-intron	ENST00000453089	ENST00000484649		TCGA	LD	OV	TCGA-61-1919-01A	ZC3H12C	chr11	110008139	+	VPS52	chr6	33232677	-
In-frame	ENST00000261247	ENST00000360909		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000261247	ENST00000351081		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000261247	ENST00000395125		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000261247	ENST00000556135		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000261247	ENST00000553966		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
3UTR-3CDS	ENST00000557560	ENST00000360909		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
3UTR-3CDS	ENST00000557560	ENST00000351081		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
3UTR-3CDS	ENST00000557560	ENST00000395125		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
3UTR-intron	ENST00000557560	ENST00000556135		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
3UTR-intron	ENST00000557560	ENST00000553966		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000425728	ENST00000360909		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000425728	ENST00000351081		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000425728	ENST00000395125		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000425728	ENST00000556135		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000425728	ENST00000553966		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000556985	ENST00000360909		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000556985	ENST00000351081		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000556985	ENST00000395125		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000556985	ENST00000556135		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000556985	ENST00000553966		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000554271	ENST00000360909		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000554271	ENST00000351081		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000554271	ENST00000395125		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000554271	ENST00000556135		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000554271	ENST00000553966		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000356057	ENST00000360909		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000356057	ENST00000351081		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000356057	ENST00000395125		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000356057	ENST00000556135		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
5CDS-intron	ENST00000356057	ENST00000553966		TCGA	LD	OV	TCGA-61-1998-01A	JKAMP	chr14	59953522	+	DAAM1	chr14	59806792	+
In-frame	ENST00000265113	ENST00000351578		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000265113	ENST00000515010		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000265113	ENST00000505428		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000265113	ENST00000512982		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000265113	ENST00000540520		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
5CDS-intron	ENST00000265113	ENST00000503065		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
3UTR-3CDS	ENST00000506725	ENST00000351578		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
3UTR-3CDS	ENST00000506725	ENST00000515010		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
3UTR-3CDS	ENST00000506725	ENST00000505428		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
3UTR-3CDS	ENST00000506725	ENST00000512982		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
3UTR-3CDS	ENST00000506725	ENST00000540520		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
3UTR-intron	ENST00000506725	ENST00000503065		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000381918	ENST00000351578		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000381918	ENST00000515010		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000381918	ENST00000505428		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000381918	ENST00000512982		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
In-frame	ENST00000381918	ENST00000540520		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
5CDS-intron	ENST00000381918	ENST00000503065		TCGA	LD	OV	TCGA-61-1998-01A	SLC1A3	chr5	36608706	+	FYB	chr5	39110491	-
Frame-shit	ENST00000421745	ENST00000344773		TCGA	LD	OV	TCGA-61-2000-01A	BIRC6	chr2	32582554	+	BRE	chr2	28352138	+
Frame-shit	ENST00000421745	ENST00000379624		TCGA	LD	OV	TCGA-61-2000-01A	BIRC6	chr2	32582554	+	BRE	chr2	28352138	+
Frame-shit	ENST00000421745	ENST00000342045		TCGA	LD	OV	TCGA-61-2000-01A	BIRC6	chr2	32582554	+	BRE	chr2	28352138	+
Frame-shit	ENST00000421745	ENST00000379632		TCGA	LD	OV	TCGA-61-2000-01A	BIRC6	chr2	32582554	+	BRE	chr2	28352138	+
Frame-shit	ENST00000421745	ENST00000361704		TCGA	LD	OV	TCGA-61-2000-01A	BIRC6	chr2	32582554	+	BRE	chr2	28352138	+
5CDS-intron	ENST00000421745	ENST00000603461		TCGA	LD	OV	TCGA-61-2000-01A	BIRC6	chr2	32582554	+	BRE	chr2	28352138	+
In-frame	ENST00000366548	ENST00000437684		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
In-frame	ENST00000366548	ENST00000366552		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
5CDS-intron	ENST00000366548	ENST00000461971		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
In-frame	ENST00000348581	ENST00000437684		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
In-frame	ENST00000348581	ENST00000366552		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
5CDS-intron	ENST00000348581	ENST00000461971		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
In-frame	ENST00000518483	ENST00000437684		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
In-frame	ENST00000518483	ENST00000366552		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
5CDS-intron	ENST00000518483	ENST00000461971		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
3UTR-3CDS	ENST00000493702	ENST00000437684		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
3UTR-3CDS	ENST00000493702	ENST00000366552		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
3UTR-intron	ENST00000493702	ENST00000461971		TCGA	LD	OV	TCGA-61-2000-01A	EXO1	chr1	242013888	+	WDR64	chr1	241951151	+
In-frame	ENST00000597960	ENST00000409224		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000597960	ENST00000424583		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000597960	ENST00000410050		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000597960	ENST00000602424		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000597960	ENST00000409447		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000597960	ENST00000162023		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
intron-3CDS	ENST00000610101	ENST00000409224		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
intron-3CDS	ENST00000610101	ENST00000424583		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
intron-3CDS	ENST00000610101	ENST00000410050		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
intron-3CDS	ENST00000610101	ENST00000602424		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
intron-3CDS	ENST00000610101	ENST00000409447		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
intron-3CDS	ENST00000610101	ENST00000162023		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000596558	ENST00000409224		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000596558	ENST00000424583		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000596558	ENST00000410050		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000596558	ENST00000602424		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000596558	ENST00000409447		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
In-frame	ENST00000596558	ENST00000162023		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000222308	ENST00000409224		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000222308	ENST00000424583		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000222308	ENST00000410050		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000222308	ENST00000602424		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000222308	ENST00000409447		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000222308	ENST00000162023		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000608443	ENST00000409224		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000608443	ENST00000424583		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000608443	ENST00000410050		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000608443	ENST00000602424		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000608443	ENST00000409447		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000608443	ENST00000162023		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000453489	ENST00000409224		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000453489	ENST00000424583		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000453489	ENST00000410050		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000453489	ENST00000602424		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000453489	ENST00000409447		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
Frame-shit	ENST00000453489	ENST00000162023		TCGA	LD	OV	TCGA-61-2000-01A	FKBP8	chr19	18649026	-	MEF2B	chr19	19258641	-
5UTR-3CDS	ENST00000468410	ENST00000424859		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-intron	ENST00000468410	ENST00000535008		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-intron	ENST00000468410	ENST00000401970		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-intron	ENST00000468410	ENST00000543266		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-3CDS	ENST00000222574	ENST00000424859		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-intron	ENST00000222574	ENST00000535008		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-intron	ENST00000222574	ENST00000401970		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
5UTR-intron	ENST00000222574	ENST00000543266		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-3CDS	ENST00000485846	ENST00000424859		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485846	ENST00000535008		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485846	ENST00000401970		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485846	ENST00000543266		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-3CDS	ENST00000461963	ENST00000424859		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-intron	ENST00000461963	ENST00000535008		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-intron	ENST00000461963	ENST00000401970		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
intron-intron	ENST00000461963	ENST00000543266		TCGA	LD	OV	TCGA-61-2000-01A	HBP1	chr7	106809472	+	LHFPL3	chr7	104377122	+
Frame-shit	ENST00000531066	ENST00000265965		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000531066	ENST00000528200		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000531066	ENST00000532265		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000531066	ENST00000532212		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000355661	ENST00000265965		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000355661	ENST00000528200		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000355661	ENST00000532265		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000355661	ENST00000532212		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000448080	ENST00000265965		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000448080	ENST00000528200		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000448080	ENST00000532265		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000448080	ENST00000532212		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000532079	ENST00000265965		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000532079	ENST00000528200		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000532079	ENST00000532265		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000532079	ENST00000532212		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000332954	ENST00000265965		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000332954	ENST00000528200		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000332954	ENST00000532265		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000332954	ENST00000532212		TCGA	LD	OV	TCGA-61-2000-01A	PLEKHA7	chr11	17035536	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000582674	ENST00000325874		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000582674	ENST00000581280		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000582674	ENST00000394744		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000328381	ENST00000325874		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000328381	ENST00000581280		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000328381	ENST00000394744		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000443677	ENST00000325874		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000443677	ENST00000581280		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000443677	ENST00000394744		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000324689	ENST00000325874		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000324689	ENST00000581280		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000324689	ENST00000394744		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000535306	ENST00000325874		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000535306	ENST00000581280		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000535306	ENST00000394744		TCGA	LD	OV	TCGA-61-2000-01A	RNF135	chr17	29298463	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000279022	ENST00000397286		TCGA	LD	OV	TCGA-61-2002-01A	MYL9	chr20	35173471	+	AAR2	chr20	34858455	+
5CDS-intron	ENST00000279022	ENST00000320849		TCGA	LD	OV	TCGA-61-2002-01A	MYL9	chr20	35173471	+	AAR2	chr20	34858455	+
5CDS-intron	ENST00000279022	ENST00000373932		TCGA	LD	OV	TCGA-61-2002-01A	MYL9	chr20	35173471	+	AAR2	chr20	34858455	+
In-frame	ENST00000346786	ENST00000397286		TCGA	LD	OV	TCGA-61-2002-01A	MYL9	chr20	35173471	+	AAR2	chr20	34858455	+
5CDS-intron	ENST00000346786	ENST00000320849		TCGA	LD	OV	TCGA-61-2002-01A	MYL9	chr20	35173471	+	AAR2	chr20	34858455	+
5CDS-intron	ENST00000346786	ENST00000373932		TCGA	LD	OV	TCGA-61-2002-01A	MYL9	chr20	35173471	+	AAR2	chr20	34858455	+
5CDS-5UTR	ENST00000406438	ENST00000541285		TCGA	LD	OV	TCGA-61-2002-01A	SMCR8	chr17	18226347	+	ALKBH5	chr17	18110129	+
5CDS-5UTR	ENST00000406438	ENST00000399138		TCGA	LD	OV	TCGA-61-2002-01A	SMCR8	chr17	18226347	+	ALKBH5	chr17	18110129	+
Frame-shit	ENST00000600175	ENST00000221700		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000600175	ENST00000011989		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
intron-3CDS	ENST00000601768	ENST00000221700		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
intron-5UTR	ENST00000601768	ENST00000011989		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
intron-3CDS	ENST00000427512	ENST00000221700		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
intron-5UTR	ENST00000427512	ENST00000011989		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000343280	ENST00000221700		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000343280	ENST00000011989		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000356584	ENST00000221700		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000356584	ENST00000011989		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
Frame-shit	ENST00000425074	ENST00000221700		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
5CDS-5UTR	ENST00000425074	ENST00000011989		TCGA	LD	OV	TCGA-61-2003-01A	ZNF772	chr19	57988002	-	CYP4F2	chr19	16003392	-
In-frame	ENST00000234160	ENST00000358196		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
5CDS-intron	ENST00000234160	ENST00000375272		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
5CDS-intron	ENST00000234160	ENST00000344257		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
5CDS-intron	ENST00000234160	ENST00000429023		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
3UTR-3CDS	ENST00000493692	ENST00000358196		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
3UTR-intron	ENST00000493692	ENST00000375272		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
3UTR-intron	ENST00000493692	ENST00000344257		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
3UTR-intron	ENST00000493692	ENST00000429023		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
In-frame	ENST00000452526	ENST00000358196		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
5CDS-intron	ENST00000452526	ENST00000375272		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
5CDS-intron	ENST00000452526	ENST00000344257		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
5CDS-intron	ENST00000452526	ENST00000429023		TCGA	LD	OV	TCGA-61-2009-01A	GORASP2	chr2	171804940	+	GAD1	chr2	171704186	+
Frame-shit	ENST00000397195	ENST00000437048		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5CDS-intron	ENST00000397195	ENST00000574029		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000397195	ENST00000576149		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000397195	ENST00000446250		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000397195	ENST00000291074		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000397195	ENST00000571805		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000397195	ENST00000401468		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-3CDS	ENST00000572915	ENST00000437048		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-intron	ENST00000572915	ENST00000574029		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-5UTR	ENST00000572915	ENST00000576149		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-5UTR	ENST00000572915	ENST00000446250		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-5UTR	ENST00000572915	ENST00000291074		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-5UTR	ENST00000572915	ENST00000571805		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
3UTR-5UTR	ENST00000572915	ENST00000401468		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-3CDS	ENST00000451360	ENST00000437048		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-intron	ENST00000451360	ENST00000574029		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000451360	ENST00000576149		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000451360	ENST00000446250		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000451360	ENST00000291074		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000451360	ENST00000571805		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000451360	ENST00000401468		TCGA	LD	OV	TCGA-61-2012-01A	PAFAH1B1	chr17	2541614	+	VPS53	chr17	505136	-
5UTR-3UTR	ENST00000356341	ENST00000339368		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000356341	ENST00000509152		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000356341	ENST00000526473		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000530617	ENST00000339368		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000530617	ENST00000509152		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000530617	ENST00000526473		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000278568	ENST00000339368		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000278568	ENST00000509152		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
5UTR-3UTR	ENST00000278568	ENST00000526473		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000528203	ENST00000339368		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000528203	ENST00000509152		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000528203	ENST00000526473		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000525542	ENST00000339368		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000525542	ENST00000509152		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
intron-3UTR	ENST00000525542	ENST00000526473		TCGA	LD	OV	TCGA-61-2012-01A	PAK1	chr11	77184597	-	ZNF595	chr4	59323	+
Frame-shit	ENST00000532489	ENST00000447857		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000532489	ENST00000593725		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
Frame-shit	ENST00000391851	ENST00000447857		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000391851	ENST00000593725		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
Frame-shit	ENST00000454376	ENST00000447857		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000454376	ENST00000593725		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
intron-3CDS	ENST00000527866	ENST00000447857		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
intron-intron	ENST00000527866	ENST00000593725		TCGA	LD	OV	TCGA-61-2012-01A	PRMT1	chr19	50185516	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000246548	ENST00000355537		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000246548	ENST00000590564		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000439527	ENST00000355537		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000439527	ENST00000590564		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000592791	ENST00000355537		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000592791	ENST00000590564		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000588585	ENST00000355537		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000588585	ENST00000590564		TCGA	LD	OV	TCGA-61-2012-01A	UBA2	chr19	34941269	+	ZNF536	chr19	31201664	+
5CDS-5UTR	ENST00000357559	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000357559	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000357559	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-intron	ENST00000357559	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000305586	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000305586	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000305586	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-intron	ENST00000305586	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000491674	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000491674	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000491674	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-intron	ENST00000491674	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000491062	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000491062	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000491062	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-intron	ENST00000491062	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000468861	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000468861	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-5UTR	ENST00000468861	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5UTR-intron	ENST00000468861	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000445140	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000445140	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-5UTR	ENST00000445140	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
5CDS-intron	ENST00000445140	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
intron-5UTR	ENST00000480918	ENST00000169298		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
intron-5UTR	ENST00000480918	ENST00000457772		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
intron-5UTR	ENST00000480918	ENST00000448044		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
intron-intron	ENST00000480918	ENST00000487031		TCGA	LD	OV	TCGA-61-2016-01A	FXR1	chr3	180630524	+	ST6GAL1	chr3	186756530	+
In-frame	ENST00000314100	ENST00000371460		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000314100	ENST00000371459		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000314100	ENST00000371461		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000314100	ENST00000306867		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000314100	ENST00000371458		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000314100	ENST00000459689		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000481247	ENST00000371460		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000481247	ENST00000371459		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000481247	ENST00000371461		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000481247	ENST00000306867		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000481247	ENST00000371458		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000481247	ENST00000459689		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000419706	ENST00000371460		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000419706	ENST00000371459		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000419706	ENST00000371461		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000419706	ENST00000306867		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000419706	ENST00000371458		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000419706	ENST00000459689		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000408958	ENST00000371460		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000408958	ENST00000371459		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000408958	ENST00000371461		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000408958	ENST00000306867		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000408958	ENST00000371458		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000408958	ENST00000459689		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000403056	ENST00000371460		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000403056	ENST00000371459		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000403056	ENST00000371461		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000403056	ENST00000306867		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000403056	ENST00000371458		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000403056	ENST00000459689		TCGA	LD	OV	TCGA-61-2088-01A	BTBD9	chr6	38545376	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000222219	ENST00000316939		TCGA	LD	OV	TCGA-61-2088-01A	DNASE2	chr19	12989196	-	GADD45GIP1	chr19	13065340	-
In-frame	ENST00000538460	ENST00000316939		TCGA	LD	OV	TCGA-61-2088-01A	DNASE2	chr19	12989196	-	GADD45GIP1	chr19	13065340	-
Frame-shit	ENST00000607016	ENST00000373186		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000373175		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000308559		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000373188		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000373195		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000340692		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000425303		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000607016	ENST00000432280		TCGA	LD	OV	TCGA-61-2088-01A	NUDT3	chr6	34309639	-	MOCS1	chr6	39883976	-
Frame-shit	ENST00000334534	ENST00000382398		TCGA	LD	OV	TCGA-61-2088-01A	SLX4IP	chr20	10438879	+	DEFB126	chr20	126056	+
5CDS-3UTR	ENST00000334534	ENST00000542572		TCGA	LD	OV	TCGA-61-2088-01A	SLX4IP	chr20	10438879	+	DEFB126	chr20	126056	+
intron-3UTR	ENST00000300107	ENST00000261888		TCGA	LD	OV	TCGA-61-2092-01A	CLPX	chr15	65440886	-	PARP16	chr15	65551735	-
intron-3UTR	ENST00000300107	ENST00000444347		TCGA	LD	OV	TCGA-61-2092-01A	CLPX	chr15	65440886	-	PARP16	chr15	65551735	-
intron-intron	ENST00000300107	ENST00000558873		TCGA	LD	OV	TCGA-61-2092-01A	CLPX	chr15	65440886	-	PARP16	chr15	65551735	-
Frame-shit	ENST00000350796	ENST00000310127		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
Frame-shit	ENST00000350796	ENST00000539485		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
Frame-shit	ENST00000350796	ENST00000525591		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
Frame-shit	ENST00000350796	ENST00000526092		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000396741	ENST00000310127		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000396741	ENST00000539485		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000396741	ENST00000525591		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000396741	ENST00000526092		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000488964	ENST00000310127		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000488964	ENST00000539485		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000488964	ENST00000525591		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
intron-3CDS	ENST00000488964	ENST00000526092		TCGA	LD	OV	TCGA-61-2092-01A	CYTH3	chr7	6312105	-	ATP8B3	chr19	1802644	-
Frame-shit	ENST00000341516	ENST00000380835		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
5CDS-intron	ENST00000341516	ENST00000298358		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
Frame-shit	ENST00000554215	ENST00000380835		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
5CDS-intron	ENST00000554215	ENST00000298358		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
Frame-shit	ENST00000556847	ENST00000380835		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
5CDS-intron	ENST00000556847	ENST00000298358		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
Frame-shit	ENST00000557386	ENST00000380835		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
5CDS-intron	ENST00000557386	ENST00000298358		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
intron-3CDS	ENST00000389997	ENST00000380835		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
intron-intron	ENST00000389997	ENST00000298358		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
intron-3CDS	ENST00000553293	ENST00000380835		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
intron-intron	ENST00000553293	ENST00000298358		TCGA	LD	OV	TCGA-61-2092-01A	DCAF5	chr14	69529101	-	NOXRED1	chr14	77861148	-
Frame-shit	ENST00000585892	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000585892	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5CDS-intron	ENST00000585892	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000314646	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000314646	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5CDS-intron	ENST00000314646	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000359692	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000359692	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5CDS-intron	ENST00000359692	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000389253	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000389253	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5CDS-intron	ENST00000389253	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000355667	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000355667	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5CDS-intron	ENST00000355667	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000408974	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
Frame-shit	ENST00000408974	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5CDS-intron	ENST00000408974	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
intron-3CDS	ENST00000591819	ENST00000361757		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
intron-3CDS	ENST00000591819	ENST00000587024		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
intron-intron	ENST00000591819	ENST00000438103		TCGA	LD	OV	TCGA-61-2092-01A	DNM2	chr19	10870487	+	SBNO2	chr19	1149441	-
5UTR-3CDS	ENST00000288221	ENST00000338458		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
5UTR-intron	ENST00000288221	ENST00000496106		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
5UTR-intron	ENST00000288221	ENST00000498517		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
5UTR-intron	ENST00000288221	ENST00000296315		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
5UTR-intron	ENST00000288221	ENST00000413728		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
5UTR-intron	ENST00000288221	ENST00000497267		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
5UTR-intron	ENST00000288221	ENST00000495373		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-3CDS	ENST00000486496	ENST00000338458		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-intron	ENST00000486496	ENST00000496106		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-intron	ENST00000486496	ENST00000498517		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-intron	ENST00000486496	ENST00000296315		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-intron	ENST00000486496	ENST00000413728		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-intron	ENST00000486496	ENST00000497267		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
intron-intron	ENST00000486496	ENST00000495373		TCGA	LD	OV	TCGA-61-2092-01A	ERC2	chr3	56502276	-	ARHGEF3	chr3	56992917	-
Frame-shit	ENST00000583610	ENST00000346872		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000394189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000439167		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000535189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000377944		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000377945		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000377952		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000377958		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000346243		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000350532		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000351680		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000467757		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000439016		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000583610	ENST00000583368		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
Frame-shit	ENST00000394294	ENST00000346872		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000394189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000439167		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000535189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000377944		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000377945		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000377952		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000377958		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000346243		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000350532		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000351680		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000467757		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000439016		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000394294	ENST00000583368		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
Frame-shit	ENST00000264658	ENST00000346872		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000394189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000439167		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000535189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000377944		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000377945		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000377952		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000377958		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000346243		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000350532		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000351680		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000467757		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000439016		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000264658	ENST00000583368		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
Frame-shit	ENST00000577399	ENST00000346872		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000394189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000439167		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000535189		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000377944		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000377945		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000377952		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000377958		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000346243		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000350532		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000351680		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000467757		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000439016		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000577399	ENST00000583368		TCGA	LD	OV	TCGA-61-2092-01A	FBXL20	chr17	37499433	-	IKZF3	chr17	37944627	-
In-frame	ENST00000394126	ENST00000303575		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5CDS-5UTR	ENST00000394126	ENST00000557670		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
Frame-shit	ENST00000356271	ENST00000303575		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5CDS-5UTR	ENST00000356271	ENST00000557670		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
Frame-shit	ENST00000394128	ENST00000303575		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5CDS-5UTR	ENST00000394128	ENST00000557670		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
Frame-shit	ENST00000394127	ENST00000303575		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5CDS-5UTR	ENST00000394127	ENST00000557670		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
In-frame	ENST00000501516	ENST00000303575		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5CDS-5UTR	ENST00000501516	ENST00000557670		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5UTR-3CDS	ENST00000479829	ENST00000303575		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
5UTR-5UTR	ENST00000479829	ENST00000557670		TCGA	LD	OV	TCGA-61-2092-01A	MED24	chr17	38209551	-	TMED10	chr14	75602589	-
Frame-shit	ENST00000507754	ENST00000252575		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
5CDS-intron	ENST00000507754	ENST00000538881		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
Frame-shit	ENST00000252576	ENST00000252575		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
5CDS-intron	ENST00000252576	ENST00000538881		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
Frame-shit	ENST00000503283	ENST00000252575		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
5CDS-intron	ENST00000503283	ENST00000538881		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
Frame-shit	ENST00000512771	ENST00000252575		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
5CDS-intron	ENST00000512771	ENST00000538881		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
Frame-shit	ENST00000428459	ENST00000252575		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
5CDS-intron	ENST00000428459	ENST00000538881		TCGA	LD	OV	TCGA-61-2092-01A	NDUFA13	chr19	19637069	+	NCAN	chr19	19337295	+
5CDS-5UTR	ENST00000405409	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000405409	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000405409	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000414461	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000414461	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000414461	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000449924	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000449924	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000449924	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000262829	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000262829	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000262829	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000397303	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000397303	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000397303	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000359369	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000359369	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000359369	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000416721	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000416721	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000416721	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000438146	ENST00000402860		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000438146	ENST00000405091		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
5CDS-5UTR	ENST00000438146	ENST00000381821		TCGA	LD	OV	TCGA-61-2092-01A	RBFOX2	chr22	36205827	-	TEX33	chr22	37400066	-
Frame-shit	ENST00000262031	ENST00000267101		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000262031	ENST00000450146		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000262031	ENST00000415288		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000262031	ENST00000553131		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000262031	ENST00000411731		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000262031	ENST00000549832		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
Frame-shit	ENST00000552247	ENST00000267101		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000552247	ENST00000450146		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-5UTR	ENST00000552247	ENST00000415288		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000552247	ENST00000553131		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000552247	ENST00000411731		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000552247	ENST00000549832		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
3UTR-3CDS	ENST00000549945	ENST00000267101		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
3UTR-intron	ENST00000549945	ENST00000450146		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
3UTR-5UTR	ENST00000549945	ENST00000415288		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
3UTR-intron	ENST00000549945	ENST00000553131		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
3UTR-intron	ENST00000549945	ENST00000411731		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
3UTR-intron	ENST00000549945	ENST00000549832		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-3CDS	ENST00000550726	ENST00000267101		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000550726	ENST00000450146		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-5UTR	ENST00000550726	ENST00000415288		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000550726	ENST00000553131		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000550726	ENST00000411731		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000550726	ENST00000549832		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-3CDS	ENST00000542360	ENST00000267101		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000542360	ENST00000450146		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-5UTR	ENST00000542360	ENST00000415288		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000542360	ENST00000553131		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000542360	ENST00000411731		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5UTR-intron	ENST00000542360	ENST00000549832		TCGA	LD	OV	TCGA-61-2092-01A	RBMS2	chr12	56915873	+	ERBB3	chr12	56477535	+
5CDS-intron	ENST00000373670	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373670	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373670	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373670	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373670	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-5UTR	ENST00000373670	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373670	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-3UTR	ENST00000373670	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000357244	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000357244	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000357244	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000357244	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000357244	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-5UTR	ENST00000357244	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000357244	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-3UTR	ENST00000357244	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000423239	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000423239	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000423239	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000423239	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000423239	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-5UTR	ENST00000423239	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000423239	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-3UTR	ENST00000423239	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373665	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373665	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373665	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373665	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373665	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-5UTR	ENST00000373665	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000373665	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-3UTR	ENST00000373665	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000335387	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000335387	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000335387	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000335387	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000335387	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-5UTR	ENST00000335387	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000335387	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-3UTR	ENST00000335387	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-intron	ENST00000478216	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-intron	ENST00000478216	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-intron	ENST00000478216	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-intron	ENST00000478216	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-intron	ENST00000478216	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-5UTR	ENST00000478216	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-intron	ENST00000478216	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
intron-3UTR	ENST00000478216	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000471874	ENST00000393232		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000471874	ENST00000353868		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000471874	ENST00000539636		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000471874	ENST00000311967		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000471874	ENST00000223190		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-5UTR	ENST00000471874	ENST00000393230		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-intron	ENST00000471874	ENST00000393231		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5CDS-3UTR	ENST00000471874	ENST00000477428		TCGA	LD	OV	TCGA-61-2092-01A	RC3H2	chr9	125655188	-	NRF1	chr7	129269919	+
5UTR-3CDS	ENST00000391878	ENST00000251808		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
5UTR-3CDS	ENST00000391878	ENST00000395927		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
5UTR-intron	ENST00000391878	ENST00000517674		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
Frame-shit	ENST00000343537	ENST00000251808		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
Frame-shit	ENST00000343537	ENST00000395927		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
5CDS-intron	ENST00000343537	ENST00000517674		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
intron-3CDS	ENST00000391879	ENST00000251808		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
intron-3CDS	ENST00000391879	ENST00000395927		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
intron-intron	ENST00000391879	ENST00000517674		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
intron-3CDS	ENST00000498843	ENST00000251808		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
intron-3CDS	ENST00000498843	ENST00000395927		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
intron-intron	ENST00000498843	ENST00000517674		TCGA	LD	OV	TCGA-61-2092-01A	TP53BP2	chr1	224001942	-	GRHL2	chr8	102631767	+
In-frame	ENST00000588262	ENST00000301244		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000588262	ENST00000587090		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000588262	ENST00000454580		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
In-frame	ENST00000252530	ENST00000301244		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000252530	ENST00000587090		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000252530	ENST00000454580		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
In-frame	ENST00000343358	ENST00000301244		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000343358	ENST00000587090		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000343358	ENST00000454580		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
3UTR-3CDS	ENST00000585954	ENST00000301244		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
3UTR-5UTR	ENST00000585954	ENST00000587090		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
3UTR-intron	ENST00000585954	ENST00000454580		TCGA	LD	OV	TCGA-61-2094-01A	FAM98C	chr19	38894334	+	SPINT2	chr19	38774267	+
In-frame	ENST00000333916	ENST00000370891		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
In-frame	ENST00000333916	ENST00000326637		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
5CDS-intron	ENST00000333916	ENST00000465473		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
Frame-shit	ENST00000535437	ENST00000370891		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
Frame-shit	ENST00000535437	ENST00000326637		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
5CDS-intron	ENST00000535437	ENST00000465473		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-3CDS	ENST00000520187	ENST00000370891		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-3CDS	ENST00000520187	ENST00000326637		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-intron	ENST00000520187	ENST00000465473		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-3CDS	ENST00000495958	ENST00000370891		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-3CDS	ENST00000495958	ENST00000326637		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-intron	ENST00000495958	ENST00000465473		TCGA	LD	OV	TCGA-61-2095-01A	CAAP1	chr9	26861064	-	TNNI3K	chr1	74832940	+
intron-3CDS	ENST00000370872	ENST00000358136		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3CDS	ENST00000370872	ENST00000356315		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3UTR	ENST00000370872	ENST00000496628		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3UTR	ENST00000370872	ENST00000543766		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-intron	ENST00000370872	ENST00000471923		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-intron	ENST00000370872	ENST00000543710		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000340866	ENST00000358136		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000340866	ENST00000356315		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-3UTR	ENST00000340866	ENST00000496628		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-3UTR	ENST00000340866	ENST00000543766		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-intron	ENST00000340866	ENST00000471923		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-intron	ENST00000340866	ENST00000543710		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3CDS	ENST00000492102	ENST00000358136		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3CDS	ENST00000492102	ENST00000356315		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3UTR	ENST00000492102	ENST00000496628		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-3UTR	ENST00000492102	ENST00000543766		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-intron	ENST00000492102	ENST00000471923		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
intron-intron	ENST00000492102	ENST00000543710		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000417775	ENST00000358136		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000417775	ENST00000356315		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-3UTR	ENST00000417775	ENST00000496628		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-3UTR	ENST00000417775	ENST00000543766		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-intron	ENST00000417775	ENST00000471923		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-intron	ENST00000417775	ENST00000543710		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000370871	ENST00000358136		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000370871	ENST00000356315		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-3UTR	ENST00000370871	ENST00000496628		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-3UTR	ENST00000370871	ENST00000543766		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-intron	ENST00000370871	ENST00000471923		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
5CDS-intron	ENST00000370871	ENST00000543710		TCGA	LD	OV	TCGA-61-2095-01A	CRYZ	chr1	75184893	-	VPS13D	chr1	12475140	+
Frame-shit	ENST00000381340	ENST00000242728		TCGA	LD	OV	TCGA-61-2098-01A	ITPR2	chr12	26943090	-	BHLHE41	chr12	26277515	-
intron-3CDS	ENST00000545902	ENST00000242728		TCGA	LD	OV	TCGA-61-2098-01A	ITPR2	chr12	26943090	-	BHLHE41	chr12	26277515	-
Frame-shit	ENST00000242737	ENST00000242728		TCGA	LD	OV	TCGA-61-2098-01A	ITPR2	chr12	26943090	-	BHLHE41	chr12	26277515	-
Frame-shit	ENST00000013125	ENST00000216373		TCGA	LD	OV	TCGA-61-2098-01A	MAP4K5	chr14	50998660	-	SOS2	chr14	50628327	-
Frame-shit	ENST00000013125	ENST00000543680		TCGA	LD	OV	TCGA-61-2098-01A	MAP4K5	chr14	50998660	-	SOS2	chr14	50628327	-
5CDS-5UTR	ENST00000013125	ENST00000555794		TCGA	LD	OV	TCGA-61-2098-01A	MAP4K5	chr14	50998660	-	SOS2	chr14	50628327	-
intron-3CDS	ENST00000557578	ENST00000216373		TCGA	LD	OV	TCGA-61-2098-01A	MAP4K5	chr14	50998660	-	SOS2	chr14	50628327	-
intron-3CDS	ENST00000557578	ENST00000543680		TCGA	LD	OV	TCGA-61-2098-01A	MAP4K5	chr14	50998660	-	SOS2	chr14	50628327	-
intron-5UTR	ENST00000557578	ENST00000555794		TCGA	LD	OV	TCGA-61-2098-01A	MAP4K5	chr14	50998660	-	SOS2	chr14	50628327	-
Frame-shit	ENST00000374012	ENST00000341197		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000374012	ENST00000423191		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000374012	ENST00000372999		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000374012	ENST00000358131		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
5CDS-3UTR	ENST00000374012	ENST00000435864		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000439301	ENST00000341197		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000439301	ENST00000423191		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000439301	ENST00000372999		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
Frame-shit	ENST00000439301	ENST00000358131		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
5CDS-3UTR	ENST00000439301	ENST00000435864		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
3UTR-3CDS	ENST00000481202	ENST00000341197		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
3UTR-3CDS	ENST00000481202	ENST00000423191		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
3UTR-3CDS	ENST00000481202	ENST00000372999		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
3UTR-3CDS	ENST00000481202	ENST00000358131		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
3UTR-3UTR	ENST00000481202	ENST00000435864		TCGA	LD	OV	TCGA-61-2098-01A	PHF20	chr20	34435356	+	TOX2	chr20	42679946	+
3UTR-5UTR	ENST00000462274	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
3UTR-5UTR	ENST00000462274	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
3UTR-5UTR	ENST00000462274	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
3UTR-5UTR	ENST00000462274	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
3UTR-5UTR	ENST00000462274	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
3UTR-5UTR	ENST00000462274	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5UTR-5UTR	ENST00000338785	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5UTR-5UTR	ENST00000338785	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5UTR-5UTR	ENST00000338785	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5UTR-5UTR	ENST00000338785	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5UTR-5UTR	ENST00000338785	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5UTR-5UTR	ENST00000338785	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000451934	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000451934	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000451934	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000451934	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000451934	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000451934	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000321219	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000321219	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000321219	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000321219	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000321219	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000321219	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000339659	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000339659	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000339659	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000339659	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000339659	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000339659	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398960	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398960	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398960	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398960	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398960	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398960	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398956	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398956	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398956	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398956	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398956	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000398956	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000455387	ENST00000370803		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000455387	ENST00000332070		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000455387	ENST00000394292		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000455387	ENST00000370799		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000455387	ENST00000416404		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
intron-5UTR	ENST00000455387	ENST00000370800		TCGA	LD	OV	TCGA-61-2101-01A	DYRK1A	chr21	38739930	+	PHF6	chrX	133511602	+
5CDS-intron	ENST00000332050	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332050	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332050	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332050	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332050	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000397938	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000397938	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000397938	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000397938	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000397938	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000406548	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000406548	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000406548	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000406548	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000406548	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000331029	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000331029	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000331029	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000331029	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000331029	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000414183	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000414183	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000414183	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000414183	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000414183	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000333395	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000333395	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000333395	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000333395	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000333395	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332035	ENST00000475548		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332035	ENST00000358743		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332035	ENST00000347557		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332035	ENST00000333137		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
5CDS-intron	ENST00000332035	ENST00000404574		TCGA	LD	OV	TCGA-61-2101-01A	EWSR1	chr22	29674205	+	SMTN	chr22	31476436	+
Frame-shit	ENST00000418814	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000418814	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-intron	ENST00000418814	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000370479	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-intron	ENST00000370479	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505769	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-intron	ENST00000505769	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000457062	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-intron	ENST00000457062	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000361499	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-intron	ENST00000361499	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
Frame-shit	ENST00000505868	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-intron	ENST00000505868	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000354662		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000441439		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000447609		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000320122		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000261169		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000540848		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000535535		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000537304		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000541295		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000534946		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000540445		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-3CDS	ENST00000508844	ENST00000541846		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
intron-intron	ENST00000508844	ENST00000537568		TCGA	LD	OV	TCGA-61-2102-01A	FAM135A	chr6	71212494	+	LMO3	chr12	16713472	-
5CDS-3UTR	ENST00000371208	ENST00000474476		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000371208	ENST00000371218		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000371208	ENST00000303721		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000371208	ENST00000371212		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000371208	ENST00000371210		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
3UTR-3UTR	ENST00000465876	ENST00000474476		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
3UTR-3UTR	ENST00000465876	ENST00000371218		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
3UTR-3UTR	ENST00000465876	ENST00000303721		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
3UTR-3UTR	ENST00000465876	ENST00000371212		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
3UTR-3UTR	ENST00000465876	ENST00000371210		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000395561	ENST00000474476		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000395561	ENST00000371218		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000395561	ENST00000303721		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000395561	ENST00000371212		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
5CDS-3UTR	ENST00000395561	ENST00000371210		TCGA	LD	OV	TCGA-61-2102-01A	HOOK1	chr1	60301084	+	FGGY	chr1	60073475	+
Frame-shit	ENST00000309364	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000359180	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000317589	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000355397	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000429027	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
5UTR-3CDS	ENST00000539256	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000299275	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000538714	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
intron-3CDS	ENST00000543806	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
intron-3CDS	ENST00000424268	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000540972	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
intron-3CDS	ENST00000510738	ENST00000256958		TCGA	LD	OV	TCGA-61-2102-01A	PLEKHA5	chr12	19285384	+	SLCO1B1	chr12	21325584	+
Frame-shit	ENST00000310301	ENST00000285279		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000310301	ENST00000433959		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000310301	ENST00000545390		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000310301	ENST00000428648		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000310301	ENST00000428097		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000310301	ENST00000418904		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000310301	ENST00000454227		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000310301	ENST00000453256		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000310301	ENST00000427700		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000310301	ENST00000471168		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000395969	ENST00000285279		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000395969	ENST00000433959		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
Frame-shit	ENST00000395969	ENST00000545390		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000395969	ENST00000428648		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000395969	ENST00000428097		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000395969	ENST00000418904		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000395969	ENST00000454227		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000395969	ENST00000453256		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000395969	ENST00000427700		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-5UTR	ENST00000395969	ENST00000471168		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000466017	ENST00000285279		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000466017	ENST00000433959		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-3CDS	ENST00000466017	ENST00000545390		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000466017	ENST00000428648		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000466017	ENST00000428097		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000466017	ENST00000418904		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-intron	ENST00000466017	ENST00000454227		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000466017	ENST00000453256		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000466017	ENST00000427700		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
intron-5UTR	ENST00000466017	ENST00000471168		TCGA	LD	OV	TCGA-61-2102-01A	VPS41	chr7	38902145	-	VOPP1	chr7	55565383	-
5CDS-intron	ENST00000370310	ENST00000212355		TCGA	LD	OV	TCGA-61-2104-01A	FAM69A	chr1	93426933	-	TGFBR3	chr1	92365254	-
5CDS-5UTR	ENST00000370310	ENST00000370399		TCGA	LD	OV	TCGA-61-2104-01A	FAM69A	chr1	93426933	-	TGFBR3	chr1	92365254	-
5CDS-intron	ENST00000370310	ENST00000525962		TCGA	LD	OV	TCGA-61-2104-01A	FAM69A	chr1	93426933	-	TGFBR3	chr1	92365254	-
5CDS-intron	ENST00000370310	ENST00000468996		TCGA	LD	OV	TCGA-61-2104-01A	FAM69A	chr1	93426933	-	TGFBR3	chr1	92365254	-
Frame-shit	ENST00000311635	ENST00000397906		TCGA	LD	OV	TCGA-61-2104-01A	FBXO31	chr16	87393901	-	TTC28	chr22	28559587	-
5CDS-intron	ENST00000311635	ENST00000490475		TCGA	LD	OV	TCGA-61-2104-01A	FBXO31	chr16	87393901	-	TTC28	chr22	28559587	-
intron-3CDS	ENST00000563956	ENST00000397906		TCGA	LD	OV	TCGA-61-2104-01A	FBXO31	chr16	87393901	-	TTC28	chr22	28559587	-
intron-intron	ENST00000563956	ENST00000490475		TCGA	LD	OV	TCGA-61-2104-01A	FBXO31	chr16	87393901	-	TTC28	chr22	28559587	-
In-frame	ENST00000255681	ENST00000337137		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
In-frame	ENST00000255681	ENST00000380995		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
In-frame	ENST00000255681	ENST00000407381		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
In-frame	ENST00000255681	ENST00000355704		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5CDS-intron	ENST00000255681	ENST00000472791		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5CDS-intron	ENST00000255681	ENST00000406733		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-3CDS	ENST00000538595	ENST00000337137		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-3CDS	ENST00000538595	ENST00000380995		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-3CDS	ENST00000538595	ENST00000407381		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-3CDS	ENST00000538595	ENST00000355704		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-intron	ENST00000538595	ENST00000472791		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-intron	ENST00000538595	ENST00000406733		TCGA	LD	OV	TCGA-61-2104-01A	MACROD1	chr11	63918711	-	TBC1D22A	chr22	47274549	+
5UTR-3CDS	ENST00000248929	ENST00000339082		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000248929	ENST00000601723		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000248929	ENST00000340093		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000248929	ENST00000221264		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000454798	ENST00000339082		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000454798	ENST00000601723		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000454798	ENST00000340093		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
5UTR-3CDS	ENST00000454798	ENST00000221264		TCGA	LD	OV	TCGA-61-2104-01A	SGSM3	chr22	40766692	+	PLAUR	chr19	44160792	-
Frame-shit	ENST00000355528	ENST00000300784		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
5CDS-intron	ENST00000355528	ENST00000572813		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
5UTR-3CDS	ENST00000397466	ENST00000300784		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
5UTR-intron	ENST00000397466	ENST00000572813		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
Frame-shit	ENST00000539345	ENST00000300784		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
5CDS-intron	ENST00000539345	ENST00000572813		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
intron-3CDS	ENST00000576691	ENST00000300784		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
intron-intron	ENST00000576691	ENST00000572813		TCGA	LD	OV	TCGA-61-2104-01A	TBCD	chr17	80710204	+	FN3K	chr17	80698718	+
5UTR-3CDS	ENST00000354618	ENST00000304526		TCGA	LD	OV	TCGA-61-2104-01A	THRAP3	chr1	36690106	+	INSL5	chr1	67266849	-
5UTR-3CDS	ENST00000469141	ENST00000304526		TCGA	LD	OV	TCGA-61-2104-01A	THRAP3	chr1	36690106	+	INSL5	chr1	67266849	-
intron-3CDS	ENST00000466743	ENST00000304526		TCGA	LD	OV	TCGA-61-2104-01A	THRAP3	chr1	36690106	+	INSL5	chr1	67266849	-
Frame-shit	ENST00000357179	ENST00000215832		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
In-frame	ENST00000357179	ENST00000398822		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
In-frame	ENST00000357179	ENST00000544786		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
5CDS-intron	ENST00000357179	ENST00000491588		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
In-frame	ENST00000398793	ENST00000215832		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
Frame-shit	ENST00000398793	ENST00000398822		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
Frame-shit	ENST00000398793	ENST00000544786		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
5CDS-intron	ENST00000398793	ENST00000491588		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000413067	ENST00000215832		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000413067	ENST00000398822		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
5UTR-3CDS	ENST00000413067	ENST00000544786		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
5UTR-intron	ENST00000413067	ENST00000491588		TCGA	LD	OV	TCGA-61-2109-01A	TOP3B	chr22	22328729	-	MAPK1	chr22	22162135	-
Frame-shit	ENST00000249837	ENST00000243878		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000249837	ENST00000602644		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
5CDS-intron	ENST00000249837	ENST00000602409		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000261517	ENST00000243878		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000261517	ENST00000602644		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
5CDS-intron	ENST00000261517	ENST00000602409		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000395896	ENST00000243878		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000395896	ENST00000602644		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
5CDS-intron	ENST00000395896	ENST00000602409		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000395898	ENST00000243878		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
Frame-shit	ENST00000395898	ENST00000602644		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
5CDS-intron	ENST00000395898	ENST00000602409		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
intron-3CDS	ENST00000558919	ENST00000243878		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
intron-3CDS	ENST00000558919	ENST00000602644		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
intron-intron	ENST00000558919	ENST00000602409		TCGA	LD	OV	TCGA-61-2109-01A	VPS13C	chr15	62221700	-	ENKD1	chr16	67697965	-
5UTR-3CDS	ENST00000383202	ENST00000360647		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000383202	ENST00000468369		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000383202	ENST00000484491		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000383202	ENST00000544464		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000383202	ENST00000492394		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000383202	ENST00000485866		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-5UTR	ENST00000383202	ENST00000497929		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000236698	ENST00000360647		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000236698	ENST00000468369		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000236698	ENST00000484491		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000236698	ENST00000544464		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000236698	ENST00000492394		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000236698	ENST00000485866		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-5UTR	ENST00000236698	ENST00000497929		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000434713	ENST00000360647		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000434713	ENST00000468369		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000434713	ENST00000484491		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000434713	ENST00000544464		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000434713	ENST00000492394		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000434713	ENST00000485866		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-5UTR	ENST00000434713	ENST00000497929		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000480733	ENST00000360647		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000480733	ENST00000468369		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000480733	ENST00000484491		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000480733	ENST00000544464		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000480733	ENST00000492394		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-3CDS	ENST00000480733	ENST00000485866		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
5UTR-5UTR	ENST00000480733	ENST00000497929		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-3CDS	ENST00000536929	ENST00000360647		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-3CDS	ENST00000536929	ENST00000468369		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-3CDS	ENST00000536929	ENST00000484491		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-3CDS	ENST00000536929	ENST00000544464		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-3CDS	ENST00000536929	ENST00000492394		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-3CDS	ENST00000536929	ENST00000485866		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
intron-5UTR	ENST00000536929	ENST00000497929		TCGA	LD	OV	TCGA-61-2110-01A	STAG1	chr3	136471037	-	ZNF148	chr3	124953173	-
Frame-shit	ENST00000263238	ENST00000263331		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
Frame-shit	ENST00000263238	ENST00000541869		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5CDS-intron	ENST00000263238	ENST00000409894		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5CDS-intron	ENST00000263238	ENST00000537335		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5CDS-intron	ENST00000263238	ENST00000417433		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5CDS-3UTR	ENST00000263238	ENST00000498054		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5UTR-3CDS	ENST00000536059	ENST00000263331		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5UTR-3CDS	ENST00000536059	ENST00000541869		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5UTR-intron	ENST00000536059	ENST00000409894		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5UTR-intron	ENST00000536059	ENST00000537335		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5UTR-intron	ENST00000536059	ENST00000417433		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
5UTR-3UTR	ENST00000536059	ENST00000498054		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
intron-3CDS	ENST00000535589	ENST00000263331		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
intron-3CDS	ENST00000535589	ENST00000541869		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
intron-intron	ENST00000535589	ENST00000409894		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
intron-intron	ENST00000535589	ENST00000537335		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
intron-intron	ENST00000535589	ENST00000417433		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
intron-3UTR	ENST00000535589	ENST00000498054		TCGA	LD	OV	TCGA-61-2111-01A	ACTR3	chr2	114647900	+	POLR1B	chr2	113316870	+
In-frame	ENST00000293971	ENST00000307149		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
5CDS-intron	ENST00000293971	ENST00000569635		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
In-frame	ENST00000302956	ENST00000307149		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
5CDS-intron	ENST00000302956	ENST00000569635		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
In-frame	ENST00000413459	ENST00000307149		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
5CDS-intron	ENST00000413459	ENST00000569635		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
intron-3CDS	ENST00000565570	ENST00000307149		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
intron-intron	ENST00000565570	ENST00000569635		TCGA	LD	OV	TCGA-61-2111-01A	AMDHD2	chr16	2571124	+	COG7	chr16	23409450	-
5CDS-intron	ENST00000356521	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000356521	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000377400	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000377400	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000382447	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000382447	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000314367	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000314367	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
intron-intron	ENST00000475411	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
intron-intron	ENST00000475411	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000377447	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000377447	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000431099	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000431099	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000382393	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000382393	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000382389	ENST00000510407		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-intron	ENST00000382389	ENST00000381641		TCGA	LD	OV	TCGA-61-2111-01A	CBWD1	chr9	175698	-	INSL6	chr9	5164265	-
5CDS-5UTR	ENST00000225719	ENST00000572316		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000225719	ENST00000354968		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000225719	ENST00000393450		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000543464	ENST00000572316		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000543464	ENST00000354968		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000543464	ENST00000393450		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000584051	ENST00000572316		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000584051	ENST00000354968		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
intron-5UTR	ENST00000584051	ENST00000393450		TCGA	LD	OV	TCGA-61-2111-01A	CPD	chr17	28712254	+	MYL4	chr17	45286755	+
intron-3CDS	ENST00000595437	ENST00000370449		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
intron-intron	ENST00000595437	ENST00000370434		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
intron-intron	ENST00000595437	ENST00000496621		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-3CDS	ENST00000376586	ENST00000370449		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-intron	ENST00000376586	ENST00000370434		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-intron	ENST00000376586	ENST00000496621		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-3CDS	ENST00000319562	ENST00000370449		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-intron	ENST00000319562	ENST00000370434		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-intron	ENST00000319562	ENST00000496621		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-3CDS	ENST00000376581	ENST00000370449		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-intron	ENST00000376581	ENST00000370434		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5UTR-intron	ENST00000376581	ENST00000496621		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
intron-3CDS	ENST00000593990	ENST00000370449		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
intron-intron	ENST00000593990	ENST00000370434		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
intron-intron	ENST00000593990	ENST00000496621		TCGA	LD	OV	TCGA-61-2111-01A	FARP1	chr13	98795746	+	ABCC2	chr10	101567141	+
5CDS-intron	ENST00000377560	ENST00000391338		TCGA	LD	OV	TCGA-61-2111-01A	HECTD4	chr12	112702979	-	ZRSR1	chr5	112227300	+
5CDS-intron	ENST00000430131	ENST00000391338		TCGA	LD	OV	TCGA-61-2111-01A	HECTD4	chr12	112702979	-	ZRSR1	chr5	112227300	+
5CDS-intron	ENST00000550722	ENST00000391338		TCGA	LD	OV	TCGA-61-2111-01A	HECTD4	chr12	112702979	-	ZRSR1	chr5	112227300	+
intron-intron	ENST00000549141	ENST00000391338		TCGA	LD	OV	TCGA-61-2111-01A	HECTD4	chr12	112702979	-	ZRSR1	chr5	112227300	+
5CDS-5UTR	ENST00000258729	ENST00000309170		TCGA	LD	OV	TCGA-61-2111-01A	IGF2BP3	chr7	23357258	-	P2RY14	chr3	150937430	-
5CDS-5UTR	ENST00000258729	ENST00000424796		TCGA	LD	OV	TCGA-61-2111-01A	IGF2BP3	chr7	23357258	-	P2RY14	chr3	150937430	-
intron-5UTR	ENST00000491719	ENST00000309170		TCGA	LD	OV	TCGA-61-2111-01A	IGF2BP3	chr7	23357258	-	P2RY14	chr3	150937430	-
intron-5UTR	ENST00000491719	ENST00000424796		TCGA	LD	OV	TCGA-61-2111-01A	IGF2BP3	chr7	23357258	-	P2RY14	chr3	150937430	-
Frame-shit	ENST00000294964	ENST00000302517		TCGA	LD	OV	TCGA-61-2111-01A	PKDCC	chr2	42284537	+	CXXC5	chr5	139062465	+
In-frame	ENST00000294964	ENST00000511048		TCGA	LD	OV	TCGA-61-2111-01A	PKDCC	chr2	42284537	+	CXXC5	chr5	139062465	+
5CDS-3UTR	ENST00000294964	ENST00000515038		TCGA	LD	OV	TCGA-61-2111-01A	PKDCC	chr2	42284537	+	CXXC5	chr5	139062465	+
3UTR-3CDS	ENST00000480099	ENST00000302517		TCGA	LD	OV	TCGA-61-2111-01A	PKDCC	chr2	42284537	+	CXXC5	chr5	139062465	+
3UTR-3CDS	ENST00000480099	ENST00000511048		TCGA	LD	OV	TCGA-61-2111-01A	PKDCC	chr2	42284537	+	CXXC5	chr5	139062465	+
3UTR-3UTR	ENST00000480099	ENST00000515038		TCGA	LD	OV	TCGA-61-2111-01A	PKDCC	chr2	42284537	+	CXXC5	chr5	139062465	+
In-frame	ENST00000359947	ENST00000374012		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000359947	ENST00000439301		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000359947	ENST00000481202		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
In-frame	ENST00000438120	ENST00000374012		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000438120	ENST00000439301		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000438120	ENST00000481202		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
In-frame	ENST00000372413	ENST00000374012		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000372413	ENST00000439301		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000372413	ENST00000481202		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
In-frame	ENST00000372414	ENST00000374012		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000372414	ENST00000439301		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
5CDS-3UTR	ENST00000372414	ENST00000481202		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
intron-3CDS	ENST00000422171	ENST00000374012		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
intron-3UTR	ENST00000422171	ENST00000439301		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
intron-3UTR	ENST00000422171	ENST00000481202		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
intron-3CDS	ENST00000496447	ENST00000374012		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
intron-3UTR	ENST00000496447	ENST00000439301		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
intron-3UTR	ENST00000496447	ENST00000481202		TCGA	LD	OV	TCGA-61-2111-01A	PTPRF	chr1	44044591	+	PHF20	chr20	34487292	+
Frame-shit	ENST00000373664	ENST00000264474		TCGA	LD	OV	TCGA-61-2111-01A	RBL1	chr20	35717392	-	CSTA	chr3	122056394	+
In-frame	ENST00000373664	ENST00000479204		TCGA	LD	OV	TCGA-61-2111-01A	RBL1	chr20	35717392	-	CSTA	chr3	122056394	+
Frame-shit	ENST00000344359	ENST00000264474		TCGA	LD	OV	TCGA-61-2111-01A	RBL1	chr20	35717392	-	CSTA	chr3	122056394	+
In-frame	ENST00000344359	ENST00000479204		TCGA	LD	OV	TCGA-61-2111-01A	RBL1	chr20	35717392	-	CSTA	chr3	122056394	+
intron-3CDS	ENST00000598590	ENST00000264474		TCGA	LD	OV	TCGA-61-2111-01A	RBL1	chr20	35717392	-	CSTA	chr3	122056394	+
intron-3CDS	ENST00000598590	ENST00000479204		TCGA	LD	OV	TCGA-61-2111-01A	RBL1	chr20	35717392	-	CSTA	chr3	122056394	+
5UTR-5UTR	ENST00000329565	ENST00000571688		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000413364		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000339430		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000381810		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000570904		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000571459		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-intron	ENST00000329565	ENST00000572255		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000576036		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000574763		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000571976		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
5UTR-5UTR	ENST00000329565	ENST00000574703		TCGA	LD	OV	TCGA-61-2111-01A	SNN	chr16	11762396	+	LITAF	chr16	11650591	-
intron-3CDS	ENST00000326956	ENST00000341197		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
intron-3CDS	ENST00000326956	ENST00000423191		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
intron-3CDS	ENST00000326956	ENST00000372999		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
intron-3CDS	ENST00000326956	ENST00000358131		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
intron-3UTR	ENST00000326956	ENST00000435864		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000417664	ENST00000341197		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000417664	ENST00000423191		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000417664	ENST00000372999		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5UTR-3CDS	ENST00000417664	ENST00000358131		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5UTR-3UTR	ENST00000417664	ENST00000435864		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371320	ENST00000341197		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371320	ENST00000423191		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371320	ENST00000372999		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371320	ENST00000358131		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5CDS-3UTR	ENST00000371320	ENST00000435864		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371319	ENST00000341197		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371319	ENST00000423191		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371319	ENST00000372999		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000371319	ENST00000358131		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5CDS-3UTR	ENST00000371319	ENST00000435864		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000357475	ENST00000341197		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000357475	ENST00000423191		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000357475	ENST00000372999		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
In-frame	ENST00000357475	ENST00000358131		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
5CDS-3UTR	ENST00000357475	ENST00000435864		TCGA	LD	OV	TCGA-61-2111-01A	SSBP3	chr1	54867534	-	TOX2	chr20	42679946	+
Frame-shit	ENST00000543875	ENST00000414691		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000543875	ENST00000514824		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000543875	ENST00000229583		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000543875	ENST00000379413		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
Frame-shit	ENST00000379426	ENST00000414691		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000379426	ENST00000514824		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000379426	ENST00000229583		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
5CDS-5UTR	ENST00000379426	ENST00000379413		TCGA	LD	OV	TCGA-61-2111-01A	TMEM170B	chr6	11538607	+	ADTRP	chr6	11723733	-
Frame-shit	ENST00000551492	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
Frame-shit	ENST00000551492	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
5CDS-intron	ENST00000551492	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
5CDS-intron	ENST00000551492	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
5CDS-intron	ENST00000551492	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
5CDS-5UTR	ENST00000551492	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000346562	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000346562	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000346562	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000346562	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000346562	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000346562	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000341321	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000341321	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000341321	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000341321	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000341321	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000341321	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000548645	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000548645	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000548645	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000548645	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000548645	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000548645	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000356141	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000356141	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000356141	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000356141	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000356141	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000356141	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000357798	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000357798	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000357798	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000357798	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000357798	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000357798	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000547068	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000547068	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000547068	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000547068	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000547068	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000547068	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000551008	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000551008	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000551008	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000551008	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000551008	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000551008	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000550662	ENST00000556611		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-3CDS	ENST00000550662	ENST00000539826		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000550662	ENST00000396582		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000550662	ENST00000432921		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-intron	ENST00000550662	ENST00000345122		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000550662	ENST00000433497		TCGA	LD	OV	TCGA-61-2113-01A	NPAS3	chr14	33404209	+	ARHGAP5	chr14	32586349	+
intron-5UTR	ENST00000301923	ENST00000355630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000301923	ENST00000396617		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000301923	ENST00000402042		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000301923	ENST00000466278		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-intron	ENST00000301923	ENST00000407029		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-intron	ENST00000301923	ENST00000402630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000402203	ENST00000355630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000402203	ENST00000396617		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000402203	ENST00000402042		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000402203	ENST00000466278		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-intron	ENST00000402203	ENST00000407029		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-intron	ENST00000402203	ENST00000402630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000454349	ENST00000355630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000454349	ENST00000396617		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000454349	ENST00000402042		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000454349	ENST00000466278		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-intron	ENST00000454349	ENST00000407029		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-intron	ENST00000454349	ENST00000402630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000335727	ENST00000355630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000335727	ENST00000396617		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000335727	ENST00000402042		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-5UTR	ENST00000335727	ENST00000466278		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-intron	ENST00000335727	ENST00000407029		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
5CDS-intron	ENST00000335727	ENST00000402630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000497559	ENST00000355630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000497559	ENST00000396617		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000497559	ENST00000402042		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-5UTR	ENST00000497559	ENST00000466278		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-intron	ENST00000497559	ENST00000407029		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
intron-intron	ENST00000497559	ENST00000402630		TCGA	LD	OV	TCGA-61-2113-01A	TNRC6B	chr22	40574144	+	MKL1	chr22	40990739	-
Frame-shit	ENST00000377560	ENST00000281938		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000377560	ENST00000542496		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
In-frame	ENST00000430131	ENST00000281938		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000430131	ENST00000542496		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
Frame-shit	ENST00000550722	ENST00000281938		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000550722	ENST00000542496		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
intron-3CDS	ENST00000549141	ENST00000281938		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
intron-3UTR	ENST00000549141	ENST00000542496		TCGA	LD	OV	TCGA-OY-A56P-01A	HECTD4	chr12	112628590	-	HSPB8	chr12	119624830	+
Frame-shit	ENST00000420886	ENST00000238146		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000420886	ENST00000538744		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-3UTR	ENST00000420886	ENST00000541259		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-intron	ENST00000420886	ENST00000421670		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000267176	ENST00000238146		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000267176	ENST00000538744		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-3UTR	ENST00000267176	ENST00000541259		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-intron	ENST00000267176	ENST00000421670		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000602750	ENST00000238146		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000602750	ENST00000538744		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-3UTR	ENST00000602750	ENST00000541259		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-intron	ENST00000602750	ENST00000421670		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000602398	ENST00000238146		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
Frame-shit	ENST00000602398	ENST00000538744		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-3UTR	ENST00000602398	ENST00000541259		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
5CDS-intron	ENST00000602398	ENST00000421670		TCGA	LD	OV	TCGA-OY-A56P-01A	SBNO1	chr12	123789129	-	DDX55	chr12	124099732	+
In-frame	ENST00000237536	ENST00000415930		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
In-frame	ENST00000237536	ENST00000356487		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
In-frame	ENST00000237536	ENST00000586425		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
intron-3CDS	ENST00000279034	ENST00000415930		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
intron-3CDS	ENST00000279034	ENST00000356487		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
intron-3CDS	ENST00000279034	ENST00000586425		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000456801	ENST00000415930		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000456801	ENST00000356487		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000456801	ENST00000586425		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000357779	ENST00000415930		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000357779	ENST00000356487		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000357779	ENST00000586425		TCGA	LD	OV	TCGA-OY-A56P-01A	SOGA1	chr20	35421652	-	GPI	chr19	34884153	+
Frame-shit	ENST00000421905	ENST00000358777		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
Frame-shit	ENST00000421905	ENST00000403660		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
5CDS-3UTR	ENST00000421905	ENST00000480278		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
Frame-shit	ENST00000221462	ENST00000358777		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
Frame-shit	ENST00000221462	ENST00000403660		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
5CDS-3UTR	ENST00000221462	ENST00000480278		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
3UTR-3CDS	ENST00000496125	ENST00000358777		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
3UTR-3CDS	ENST00000496125	ENST00000403660		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
3UTR-3UTR	ENST00000496125	ENST00000480278		TCGA	LD	OV	TCGA-OY-A56Q-01A	PPP1R37	chr19	45596785	+	CEACAM19	chr19	45185839	+
Frame-shit	ENST00000360325	ENST00000302422		TCGA	LD	OV	TCGA-VG-A8LO-01A	CLDN7	chr17	7165140	-	TMEM256	chr17	7307008	-
Frame-shit	ENST00000538261	ENST00000302422		TCGA	LD	OV	TCGA-VG-A8LO-01A	CLDN7	chr17	7165140	-	TMEM256	chr17	7307008	-
Frame-shit	ENST00000397317	ENST00000302422		TCGA	LD	OV	TCGA-VG-A8LO-01A	CLDN7	chr17	7165140	-	TMEM256	chr17	7307008	-
intron-3CDS	ENST00000571881	ENST00000302422		TCGA	LD	OV	TCGA-VG-A8LO-01A	CLDN7	chr17	7165140	-	TMEM256	chr17	7307008	-
intron-3CDS	ENST00000573745	ENST00000302422		TCGA	LD	OV	TCGA-VG-A8LO-01A	CLDN7	chr17	7165140	-	TMEM256	chr17	7307008	-
Frame-shit	ENST00000349769	ENST00000428558		TCGA	LD	OV	TCGA-VG-A8LO-01A	CPSF1	chr8	145624666	-	RECQL4	chr8	145742148	-
5CDS-5UTR	ENST00000349769	ENST00000532237		TCGA	LD	OV	TCGA-VG-A8LO-01A	CPSF1	chr8	145624666	-	RECQL4	chr8	145742148	-
intron-3CDS	ENST00000531727	ENST00000428558		TCGA	LD	OV	TCGA-VG-A8LO-01A	CPSF1	chr8	145624666	-	RECQL4	chr8	145742148	-
intron-5UTR	ENST00000531727	ENST00000532237		TCGA	LD	OV	TCGA-VG-A8LO-01A	CPSF1	chr8	145624666	-	RECQL4	chr8	145742148	-
Frame-shit	ENST00000380420	ENST00000252519		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
Frame-shit	ENST00000380420	ENST00000427411		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
5CDS-intron	ENST00000380420	ENST00000471548		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
Frame-shit	ENST00000380421	ENST00000252519		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
Frame-shit	ENST00000380421	ENST00000427411		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
5CDS-intron	ENST00000380421	ENST00000471548		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
5UTR-3CDS	ENST00000476381	ENST00000252519		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
5UTR-3CDS	ENST00000476381	ENST00000427411		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
5UTR-intron	ENST00000476381	ENST00000471548		TCGA	LD	OV	TCGA-VG-A8LO-01A	PIR	chrX	15477780	-	ACE2	chrX	15613126	-
intron-3UTR	ENST00000325351	ENST00000332836		TCGA	LD	OV	TCGA-VG-A8LO-01A	ZNF784	chr19	56133132	-	NLRP9	chr19	56220104	-
intron-3UTR	ENST00000591479	ENST00000332836		TCGA	LD	OV	TCGA-VG-A8LO-01A	ZNF784	chr19	56133132	-	NLRP9	chr19	56220104	-
In-frame	ENST00000265421	ENST00000343823		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000265421	ENST00000250635		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000265421	ENST00000545394		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000265421	ENST00000428278		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000265421	ENST00000521652		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
5CDS-intron	ENST00000265421	ENST00000524263		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000538005	ENST00000343823		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000538005	ENST00000250635		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000538005	ENST00000545394		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000538005	ENST00000428278		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000538005	ENST00000521652		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
5CDS-intron	ENST00000538005	ENST00000524263		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
intron-3CDS	ENST00000530566	ENST00000343823		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
intron-3CDS	ENST00000530566	ENST00000250635		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
intron-3CDS	ENST00000530566	ENST00000545394		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
intron-3CDS	ENST00000530566	ENST00000428278		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
intron-3CDS	ENST00000530566	ENST00000521652		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
intron-intron	ENST00000530566	ENST00000524263		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000521492	ENST00000343823		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000521492	ENST00000250635		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000521492	ENST00000545394		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000521492	ENST00000428278		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
In-frame	ENST00000521492	ENST00000521652		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
5CDS-intron	ENST00000521492	ENST00000524263		TCGA	LD	OV	TCGA-WR-A838-01A	POLB	chr8	42227506	+	ASH2L	chr8	37976788	+
5UTR-3CDS	ENST00000307790	ENST00000215793		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
5UTR-3CDS	ENST00000307790	ENST00000439242		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
5UTR-3CDS	ENST00000397771	ENST00000215793		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
5UTR-3CDS	ENST00000397771	ENST00000439242		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
5UTR-3CDS	ENST00000542393	ENST00000215793		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
5UTR-3CDS	ENST00000542393	ENST00000439242		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
intron-3CDS	ENST00000478812	ENST00000215793		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
intron-3CDS	ENST00000478812	ENST00000439242		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	ASCC2	chr22	30234167	-	SF3A1	chr22	30736801	-
5CDS-5UTR	ENST00000448841	ENST00000369893		TCGA	RV	PAAD	TCGA-2J-AABU-01A	WBP1L	chr10	104569811	+	SFXN2	chr10	104486369	+
5CDS-3UTR	ENST00000448841	ENST00000602785		TCGA	RV	PAAD	TCGA-2J-AABU-01A	WBP1L	chr10	104569811	+	SFXN2	chr10	104486369	+
5CDS-5UTR	ENST00000369889	ENST00000369893		TCGA	RV	PAAD	TCGA-2J-AABU-01A	WBP1L	chr10	104569811	+	SFXN2	chr10	104486369	+
5CDS-3UTR	ENST00000369889	ENST00000602785		TCGA	RV	PAAD	TCGA-2J-AABU-01A	WBP1L	chr10	104569811	+	SFXN2	chr10	104486369	+
5UTR-intron	ENST00000317058	ENST00000569045		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	CCDC101	chr16	28565418	+	CDR2	chr16	22361170	-
5UTR-intron	ENST00000317058	ENST00000268383		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	CCDC101	chr16	28565418	+	CDR2	chr16	22361170	-
5CDS-5UTR	ENST00000265734	ENST00000265742		TCGA	RV	PAAD	TCGA-IB-A5SO-01A	CDK6	chr7	92404010	-	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000265734	ENST00000486698		TCGA	RV	PAAD	TCGA-IB-A5SO-01A	CDK6	chr7	92404010	-	ANKIB1	chr7	91924203	+
5CDS-5UTR	ENST00000424848	ENST00000265742		TCGA	RV	PAAD	TCGA-IB-A5SO-01A	CDK6	chr7	92404010	-	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000424848	ENST00000486698		TCGA	RV	PAAD	TCGA-IB-A5SO-01A	CDK6	chr7	92404010	-	ANKIB1	chr7	91924203	+
intron-5UTR	ENST00000491250	ENST00000265742		TCGA	RV	PAAD	TCGA-IB-A5SO-01A	CDK6	chr7	92404010	-	ANKIB1	chr7	91924203	+
intron-intron	ENST00000491250	ENST00000486698		TCGA	RV	PAAD	TCGA-IB-A5SO-01A	CDK6	chr7	92404010	-	ANKIB1	chr7	91924203	+
intron-5UTR	ENST00000487752	ENST00000543086		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
intron-5UTR	ENST00000487752	ENST00000546231		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
intron-5UTR	ENST00000487752	ENST00000397203		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
intron-5UTR	ENST00000487752	ENST00000360905		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
intron-5UTR	ENST00000487752	ENST00000589028		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
intron-intron	ENST00000487752	ENST00000355446		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
intron-intron	ENST00000487752	ENST00000536573		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261340	ENST00000543086		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261340	ENST00000546231		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261340	ENST00000397203		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261340	ENST00000360905		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261340	ENST00000589028		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000261340	ENST00000355446		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000261340	ENST00000536573		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000290855	ENST00000543086		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000290855	ENST00000546231		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000290855	ENST00000397203		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000290855	ENST00000360905		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000290855	ENST00000589028		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000290855	ENST00000355446		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000290855	ENST00000536573		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000545918	ENST00000543086		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000545918	ENST00000546231		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000545918	ENST00000397203		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000545918	ENST00000360905		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000545918	ENST00000589028		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000545918	ENST00000355446		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000545918	ENST00000536573		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000543300	ENST00000543086		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000543300	ENST00000546231		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000543300	ENST00000397203		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000543300	ENST00000360905		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000543300	ENST00000589028		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000543300	ENST00000355446		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000543300	ENST00000536573		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261339	ENST00000543086		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261339	ENST00000546231		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261339	ENST00000397203		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261339	ENST00000360905		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000261339	ENST00000589028		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000261339	ENST00000355446		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-intron	ENST00000261339	ENST00000536573		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	CLEC2D	chr12	9840682	+	ERC1	chr12	1136914	+
5CDS-5UTR	ENST00000304636	ENST00000311852		TCGA	RV	PAAD	TCGA-IB-7891-01A	COL3A1	chr2	189877472	+	MMP14	chr14	23305829	+
5CDS-3UTR	ENST00000304636	ENST00000548162		TCGA	RV	PAAD	TCGA-IB-7891-01A	COL3A1	chr2	189877472	+	MMP14	chr14	23305829	+
5CDS-5UTR	ENST00000317840	ENST00000311852		TCGA	RV	PAAD	TCGA-IB-7891-01A	COL3A1	chr2	189877472	+	MMP14	chr14	23305829	+
5CDS-3UTR	ENST00000317840	ENST00000548162		TCGA	RV	PAAD	TCGA-IB-7891-01A	COL3A1	chr2	189877472	+	MMP14	chr14	23305829	+
Frame-shit	ENST00000540367	ENST00000250894		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
Frame-shit	ENST00000540367	ENST00000356010		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
5CDS-intron	ENST00000540367	ENST00000568271		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
In-frame	ENST00000376618	ENST00000250894		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
In-frame	ENST00000376618	ENST00000356010		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
5CDS-intron	ENST00000376618	ENST00000568271		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
In-frame	ENST00000265641	ENST00000250894		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
In-frame	ENST00000265641	ENST00000356010		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
5CDS-intron	ENST00000265641	ENST00000568271		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
Frame-shit	ENST00000539743	ENST00000250894		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
Frame-shit	ENST00000539743	ENST00000356010		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
5CDS-intron	ENST00000539743	ENST00000568271		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
intron-3CDS	ENST00000537756	ENST00000250894		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
intron-3CDS	ENST00000537756	ENST00000356010		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
intron-intron	ENST00000537756	ENST00000568271		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
intron-3CDS	ENST00000538994	ENST00000250894		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
intron-3CDS	ENST00000538994	ENST00000356010		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
intron-intron	ENST00000538994	ENST00000568271		TCGA	RV	PAAD	TCGA-OE-A75W-01A	CPT1A	chr11	68579905	-	MAPK8IP3	chr16	1779139	+
In-frame	ENST00000437600	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000292538	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000393824	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000547394	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000360264	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000425244	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000292535	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000549414	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000556210	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000550008	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
In-frame	ENST00000546411	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
3UTR-3CDS	ENST00000560541	ENST00000288602		TCGA	RV	PAAD	TCGA-F2-A44H-01A	CUX1	chr7	101758553	+	BRAF	chr7	140494267	-
Frame-shit	ENST00000325722	ENST00000359242		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
Frame-shit	ENST00000325722	ENST00000370567		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
Frame-shit	ENST00000325722	ENST00000394731		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
Frame-shit	ENST00000325722	ENST00000317336		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
Frame-shit	ENST00000325722	ENST00000370566		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
Frame-shit	ENST00000325722	ENST00000294678		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
5CDS-5UTR	ENST00000325722	ENST00000524695		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
5CDS-intron	ENST00000325722	ENST00000478286		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
5CDS-intron	ENST00000325722	ENST00000486215		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000373266	ENST00000359242		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000373266	ENST00000370567		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000373266	ENST00000394731		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000373266	ENST00000317336		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000373266	ENST00000370566		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000373266	ENST00000294678		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-5UTR	ENST00000373266	ENST00000524695		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-intron	ENST00000373266	ENST00000478286		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-intron	ENST00000373266	ENST00000486215		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000485551	ENST00000359242		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000485551	ENST00000370567		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000485551	ENST00000394731		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000485551	ENST00000317336		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000485551	ENST00000370566		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-3CDS	ENST00000485551	ENST00000294678		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-5UTR	ENST00000485551	ENST00000524695		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-intron	ENST00000485551	ENST00000478286		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
intron-intron	ENST00000485551	ENST00000486215		TCGA	RV	PAAD	TCGA-3A-A9IX-01A	KIAA0319L	chr1	35972213	-	ODF2L	chr1	86838223	-
Frame-shit	ENST00000330909	ENST00000273261		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000330909	ENST00000383703		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
5CDS-intron	ENST00000330909	ENST00000496559		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000402939	ENST00000273261		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000402939	ENST00000383703		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
5CDS-intron	ENST00000402939	ENST00000496559		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000483466	ENST00000273261		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000483466	ENST00000383703		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
5CDS-intron	ENST00000483466	ENST00000496559		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000497477	ENST00000273261		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
Frame-shit	ENST00000497477	ENST00000383703		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
5CDS-intron	ENST00000497477	ENST00000496559		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
intron-3CDS	ENST00000470990	ENST00000273261		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
intron-3CDS	ENST00000470990	ENST00000383703		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
intron-intron	ENST00000470990	ENST00000496559		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	MAGI1	chr3	66023671	-	LRIG1	chr3	66512933	-
intron-intron	ENST00000578646	ENST00000431264		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
intron-intron	ENST00000578646	ENST00000424526		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
intron-3UTR	ENST00000578646	ENST00000400483		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
intron-3UTR	ENST00000578646	ENST00000269218		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
intron-3UTR	ENST00000578646	ENST00000580732		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
intron-intron	ENST00000578646	ENST00000578368		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
5CDS-intron	ENST00000261537	ENST00000431264		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
5CDS-intron	ENST00000261537	ENST00000424526		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
5CDS-3UTR	ENST00000261537	ENST00000400483		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
5CDS-3UTR	ENST00000261537	ENST00000269218		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
5CDS-3UTR	ENST00000261537	ENST00000580732		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
5CDS-intron	ENST00000261537	ENST00000578368		TCGA	RV	PAAD	TCGA-IB-A5SQ-01A	MIB1	chr18	19321773	+	GREB1L	chr18	19085373	+
In-frame	ENST00000409720	ENST00000392332		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
In-frame	ENST00000409720	ENST00000359678		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
In-frame	ENST00000409720	ENST00000410045		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
5CDS-5UTR	ENST00000409720	ENST00000486981		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
Frame-shit	ENST00000356853	ENST00000392332		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
Frame-shit	ENST00000356853	ENST00000359678		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
Frame-shit	ENST00000356853	ENST00000410045		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
5CDS-5UTR	ENST00000356853	ENST00000486981		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
intron-3CDS	ENST00000483627	ENST00000392332		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
intron-3CDS	ENST00000483627	ENST00000359678		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
intron-3CDS	ENST00000483627	ENST00000410045		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
intron-5UTR	ENST00000483627	ENST00000486981		TCGA	RV	PAAD	TCGA-IB-7654-01A	NHEJ1	chr2	220011402	-	HIBCH	chr2	191077801	-
5CDS-3UTR	ENST00000521746	ENST00000343295		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
5CDS-3UTR	ENST00000521746	ENST00000502986		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
5CDS-3UTR	ENST00000521746	ENST00000389060		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
5CDS-3UTR	ENST00000420274	ENST00000343295		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
5CDS-3UTR	ENST00000420274	ENST00000502986		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
5CDS-3UTR	ENST00000420274	ENST00000389060		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
3UTR-3UTR	ENST00000388745	ENST00000343295		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
3UTR-3UTR	ENST00000388745	ENST00000502986		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
3UTR-3UTR	ENST00000388745	ENST00000389060		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	PLEKHA2	chr8	38793568	+	IDO2	chr8	39847240	+
5CDS-5UTR	ENST00000399799	ENST00000376356		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	ROCK1	chr18	18690779	-	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000399799	ENST00000524413		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	ROCK1	chr18	18690779	-	THNSL1	chr10	25310671	+
5CDS-intron	ENST00000399878	ENST00000302219		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5CDS-intron	ENST00000399878	ENST00000328546		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5CDS-intron	ENST00000264868	ENST00000302219		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5CDS-intron	ENST00000264868	ENST00000328546		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5CDS-intron	ENST00000502949	ENST00000302219		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5CDS-intron	ENST00000502949	ENST00000328546		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5UTR-intron	ENST00000513364	ENST00000302219		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
5UTR-intron	ENST00000513364	ENST00000328546		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	SEL1L3	chr4	25835070	-	HSD17B13	chr4	88239588	-
In-frame	ENST00000361368	ENST00000356239		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
In-frame	ENST00000361368	ENST00000358100		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
In-frame	ENST00000361368	ENST00000359028		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
5CDS-intron	ENST00000361368	ENST00000394564		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
5CDS-intron	ENST00000361368	ENST00000491695		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
In-frame	ENST00000361125	ENST00000356239		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
In-frame	ENST00000361125	ENST00000358100		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
In-frame	ENST00000361125	ENST00000359028		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
5CDS-intron	ENST00000361125	ENST00000394564		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
5CDS-intron	ENST00000361125	ENST00000491695		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
intron-3CDS	ENST00000480055	ENST00000356239		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
intron-3CDS	ENST00000480055	ENST00000358100		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
intron-3CDS	ENST00000480055	ENST00000359028		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
intron-intron	ENST00000480055	ENST00000394564		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
intron-intron	ENST00000480055	ENST00000491695		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	SMURF1	chr7	98741349	-	AKAP9	chr7	91711836	+
Frame-shit	ENST00000296632	ENST00000373996		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
Frame-shit	ENST00000296632	ENST00000313400		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
Frame-shit	ENST00000296632	ENST00000361209		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
5CDS-5UTR	ENST00000296632	ENST00000361477		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
5CDS-intron	ENST00000296632	ENST00000288520		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
5CDS-intron	ENST00000296632	ENST00000341734		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
5CDS-intron	ENST00000296632	ENST00000358637		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000512160	ENST00000373996		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000512160	ENST00000313400		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000512160	ENST00000361209		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-5UTR	ENST00000512160	ENST00000361477		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000512160	ENST00000288520		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000512160	ENST00000341734		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000512160	ENST00000358637		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000502322	ENST00000373996		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000502322	ENST00000313400		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000502322	ENST00000361209		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-5UTR	ENST00000502322	ENST00000361477		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000502322	ENST00000288520		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000502322	ENST00000341734		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000502322	ENST00000358637		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000509887	ENST00000373996		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000509887	ENST00000313400		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000509887	ENST00000361209		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-5UTR	ENST00000509887	ENST00000361477		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000509887	ENST00000288520		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000509887	ENST00000341734		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000509887	ENST00000358637		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000511569	ENST00000373996		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000511569	ENST00000313400		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-3CDS	ENST00000511569	ENST00000361209		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-5UTR	ENST00000511569	ENST00000361477		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000511569	ENST00000288520		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000511569	ENST00000341734		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
intron-intron	ENST00000511569	ENST00000358637		TCGA	RV	PAAD	TCGA-IB-7893-01A	STARD4	chr5	110836700	-	ASTN2	chr9	119770538	-
5CDS-5UTR	ENST00000054650	ENST00000336890		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000054650	ENST00000333070		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000054650	ENST00000373564		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
3UTR-5UTR	ENST00000484676	ENST00000336890		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
3UTR-5UTR	ENST00000484676	ENST00000333070		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
3UTR-5UTR	ENST00000484676	ENST00000373564		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000307896	ENST00000336890		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000307896	ENST00000333070		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000307896	ENST00000373564		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000377627	ENST00000336890		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000377627	ENST00000333070		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000377627	ENST00000373564		TCGA	RV	PAAD	TCGA-2J-AAB1-01A	THAP3	chr1	6685352	+	LCK	chr1	32739926	+
In-frame	ENST00000299240	ENST00000534111		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000299240	ENST00000522307		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000299240	ENST00000523251		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000299240	ENST00000437212		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000299240	ENST00000522824		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
5CDS-3UTR	ENST00000299240	ENST00000518413		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000039989	ENST00000534111		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000039989	ENST00000522307		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000039989	ENST00000523251		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000039989	ENST00000437212		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
In-frame	ENST00000039989	ENST00000522824		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
5CDS-3UTR	ENST00000039989	ENST00000518413		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-3CDS	ENST00000526774	ENST00000534111		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-3CDS	ENST00000526774	ENST00000522307		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-3CDS	ENST00000526774	ENST00000523251		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-3CDS	ENST00000526774	ENST00000437212		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-3CDS	ENST00000526774	ENST00000522824		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-3UTR	ENST00000526774	ENST00000518413		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TTC17	chr11	43411371	+	TMPRSS4	chr11	117983984	+
intron-intron	ENST00000237014	ENST00000264818		TCGA	RV	PAAD	TCGA-3A-A9IS-01A	TTR	chr18	29178984	+	TYK2	chr19	10491352	-
intron-intron	ENST00000237014	ENST00000524462		TCGA	RV	PAAD	TCGA-3A-A9IS-01A	TTR	chr18	29178984	+	TYK2	chr19	10491352	-
intron-intron	ENST00000237014	ENST00000525621		TCGA	RV	PAAD	TCGA-3A-A9IS-01A	TTR	chr18	29178984	+	TYK2	chr19	10491352	-
intron-intron	ENST00000237014	ENST00000529370		TCGA	RV	PAAD	TCGA-3A-A9IS-01A	TTR	chr18	29178984	+	TYK2	chr19	10491352	-
intron-intron	ENST00000237014	ENST00000529422		TCGA	RV	PAAD	TCGA-3A-A9IS-01A	TTR	chr18	29178984	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000396787	ENST00000590956		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000396787	ENST00000440960		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000396787	ENST00000336990		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-5UTR	ENST00000396787	ENST00000592149		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000396787	ENST00000587735		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378495	ENST00000590956		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378495	ENST00000440960		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378495	ENST00000336990		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-5UTR	ENST00000378495	ENST00000592149		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378495	ENST00000587735		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378496	ENST00000590956		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378496	ENST00000440960		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378496	ENST00000336990		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-5UTR	ENST00000378496	ENST00000592149		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-intron	ENST00000378496	ENST00000587735		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
intron-intron	ENST00000481299	ENST00000590956		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
intron-intron	ENST00000481299	ENST00000440960		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
intron-intron	ENST00000481299	ENST00000336990		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
intron-5UTR	ENST00000481299	ENST00000592149		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
intron-intron	ENST00000481299	ENST00000587735		TCGA	RV	PAAD	TCGA-HZ-A8P0-01A	UNC13B	chr9	35259047	+	SLMO1	chr18	12420324	+
5CDS-5UTR	ENST00000398457	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000398457	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000398457	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
3UTR-5UTR	ENST00000462050	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
3UTR-5UTR	ENST00000462050	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
3UTR-5UTR	ENST00000462050	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000347800	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000347800	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000347800	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000398449	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000398449	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000398449	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000361802	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000361802	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000361802	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000343687	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000343687	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
5CDS-5UTR	ENST00000343687	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-5UTR	ENST00000398437	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-5UTR	ENST00000398437	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-5UTR	ENST00000398437	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-5UTR	ENST00000340588	ENST00000339775		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-5UTR	ENST00000340588	ENST00000348354		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-5UTR	ENST00000340588	ENST00000464058		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	ABCG1	chr21	43646024	+	BTG3	chr21	18981470	-
intron-3CDS	ENST00000464611	ENST00000290122		TCGA	RV	PAAD	TCGA-HZ-8003-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-3CDS	ENST00000464611	ENST00000374663		TCGA	RV	PAAD	TCGA-HZ-8003-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-3CDS	ENST00000331789	ENST00000290122		TCGA	RV	PAAD	TCGA-HZ-8003-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-3CDS	ENST00000331789	ENST00000374663		TCGA	RV	PAAD	TCGA-HZ-8003-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
Frame-shit	ENST00000336665	ENST00000436443		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000336665	ENST00000342788		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000336665	ENST00000402597		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
5CDS-intron	ENST00000336665	ENST00000484474		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000304032	ENST00000436443		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000304032	ENST00000342788		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000304032	ENST00000402597		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
5CDS-intron	ENST00000304032	ENST00000484474		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000409538	ENST00000436443		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000409538	ENST00000342788		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000409538	ENST00000402597		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
5CDS-intron	ENST00000409538	ENST00000484474		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000428334	ENST00000436443		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000428334	ENST00000342788		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000428334	ENST00000402597		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
5CDS-intron	ENST00000428334	ENST00000484474		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000409457	ENST00000436443		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000409457	ENST00000342788		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
Frame-shit	ENST00000409457	ENST00000402597		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
5CDS-intron	ENST00000409457	ENST00000484474		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	AGAP1	chr2	236715975	+	ERBB4	chr2	212289026	-
In-frame	ENST00000265742	ENST00000354593		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	ANKIB1	chr7	92021606	+	CYP3A4	chr7	99359890	-
In-frame	ENST00000265742	ENST00000336411		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	ANKIB1	chr7	92021606	+	CYP3A4	chr7	99359890	-
intron-3CDS	ENST00000486698	ENST00000354593		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	ANKIB1	chr7	92021606	+	CYP3A4	chr7	99359890	-
intron-3CDS	ENST00000486698	ENST00000336411		TCGA	RV	PAAD	TCGA-IB-AAUS-01A	ANKIB1	chr7	92021606	+	CYP3A4	chr7	99359890	-
5CDS-5UTR	ENST00000373318	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373318	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373318	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373318	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373318	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000391987	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000391987	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000391987	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000391987	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000391987	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373320	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373320	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373320	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373320	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000373320	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000406958	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000406958	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000406958	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000406958	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000406958	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000272972	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000272972	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000272972	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000272972	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000272972	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000361678	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000361678	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000361678	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000361678	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000361678	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000403283	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000403283	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000403283	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000403283	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000403283	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000401804	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000401804	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000401804	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000401804	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000401804	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000536462	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000536462	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000536462	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000536462	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000536462	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405523	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405523	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405523	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405523	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405523	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405002	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405002	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405002	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405002	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5CDS-5UTR	ENST00000405002	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5UTR-5UTR	ENST00000462004	ENST00000319838		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5UTR-5UTR	ENST00000462004	ENST00000438013		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5UTR-5UTR	ENST00000462004	ENST00000403859		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5UTR-5UTR	ENST00000462004	ENST00000407714		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
5UTR-5UTR	ENST00000462004	ENST00000430267		TCGA	RV	PAAD	TCGA-2J-AABR-01A	ANKMY1	chr2	241492331	-	GPR35	chr2	241569366	+
In-frame	ENST00000355272	ENST00000398665		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
5CDS-intron	ENST00000355272	ENST00000608122		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
In-frame	ENST00000356926	ENST00000398665		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
5CDS-intron	ENST00000356926	ENST00000608122		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
In-frame	ENST00000350812	ENST00000398665		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
5CDS-intron	ENST00000350812	ENST00000608122		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
In-frame	ENST00000345016	ENST00000398665		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
5CDS-intron	ENST00000345016	ENST00000608122		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
intron-3CDS	ENST00000590683	ENST00000398665		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
intron-intron	ENST00000590683	ENST00000608122		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	AP3D1	chr19	2151238	-	DOT1L	chr19	2210399	+
5UTR-3CDS	ENST00000378378	ENST00000422843		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
5UTR-3UTR	ENST00000378378	ENST00000519749		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
intron-3CDS	ENST00000378373	ENST00000422843		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
intron-3UTR	ENST00000378373	ENST00000519749		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
intron-3CDS	ENST00000378371	ENST00000422843		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
intron-3UTR	ENST00000378371	ENST00000519749		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
intron-3CDS	ENST00000413250	ENST00000422843		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
intron-3UTR	ENST00000413250	ENST00000519749		TCGA	RV	PAAD	TCGA-3A-A9IH-01A	ARHGEF16	chr1	3371375	+	ITK	chr5	156670633	+
In-frame	ENST00000288602	ENST00000437600		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000292538		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000393824		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000547394		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000360264		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000425244		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000292535		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000549414		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000556210		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000550008		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
In-frame	ENST00000288602	ENST00000546411		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
5CDS-3UTR	ENST00000288602	ENST00000560541		TCGA	RV	PAAD	TCGA-F2-A44H-01A	BRAF	chr7	140500162	-	CUX1	chr7	101801840	+
Frame-shit	ENST00000333229	ENST00000333781		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000333229	ENST00000541890		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000333229	ENST00000398753		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000333229	ENST00000380708		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000333229	ENST00000466787		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000342449	ENST00000333781		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000342449	ENST00000541890		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000342449	ENST00000398753		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000342449	ENST00000380708		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000342449	ENST00000466787		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000380800	ENST00000333781		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000380800	ENST00000541890		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000380800	ENST00000398753		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
Frame-shit	ENST00000380800	ENST00000380708		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
5CDS-3UTR	ENST00000380800	ENST00000466787		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000341322	ENST00000333781		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000341322	ENST00000541890		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000341322	ENST00000398753		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000341322	ENST00000380708		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3UTR	ENST00000341322	ENST00000466787		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000470108	ENST00000333781		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000470108	ENST00000541890		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000470108	ENST00000398753		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3CDS	ENST00000470108	ENST00000380708		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
intron-3UTR	ENST00000470108	ENST00000466787		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	BRWD1	chr21	40572145	-	WRB	chr21	40762624	+
In-frame	ENST00000375820	ENST00000601935		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000375820	ENST00000600313		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000375820	ENST00000596211		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000375820	ENST00000359788		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000375820	ENST00000601010		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000375820	ENST00000599168		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000543140	ENST00000601935		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000543140	ENST00000600313		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000543140	ENST00000596211		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000543140	ENST00000359788		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000543140	ENST00000601010		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000543140	ENST00000599168		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
intron-3CDS	ENST00000467182	ENST00000601935		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
intron-3CDS	ENST00000467182	ENST00000600313		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
intron-3CDS	ENST00000467182	ENST00000596211		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
intron-3CDS	ENST00000467182	ENST00000359788		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
intron-3CDS	ENST00000467182	ENST00000601010		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
intron-3CDS	ENST00000467182	ENST00000599168		TCGA	RV	PAAD	TCGA-2J-AABP-01A	COL4A1	chr13	110959291	-	ZNF675	chr19	23845960	-
In-frame	ENST00000378204	ENST00000409003		TCGA	RV	PAAD	TCGA-HZ-8637-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000314727		TCGA	RV	PAAD	TCGA-HZ-8637-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	PAAD	TCGA-HZ-8637-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5UTR-intron	ENST00000299293	ENST00000394182		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000299293	ENST00000322569		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000299293	ENST00000548629		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000299293	ENST00000409200		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-5UTR	ENST00000299293	ENST00000547487		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000549921	ENST00000394182		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000549921	ENST00000322569		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000549921	ENST00000548629		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000549921	ENST00000409200		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-5UTR	ENST00000549921	ENST00000547487		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000550389	ENST00000394182		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000550389	ENST00000322569		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000550389	ENST00000548629		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-intron	ENST00000550389	ENST00000409200		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
5UTR-5UTR	ENST00000550389	ENST00000547487		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
intron-intron	ENST00000397997	ENST00000394182		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
intron-intron	ENST00000397997	ENST00000322569		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
intron-intron	ENST00000397997	ENST00000548629		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
intron-intron	ENST00000397997	ENST00000409200		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
intron-5UTR	ENST00000397997	ENST00000547487		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	FRS2	chr12	69864310	+	MMP19	chr12	56236222	-
intron-intron	ENST00000425327	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-5UTR	ENST00000425327	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000425327	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-intron	ENST00000393775	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-5UTR	ENST00000393775	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-intron	ENST00000393775	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-intron	ENST00000489689	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-5UTR	ENST00000489689	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-intron	ENST00000489689	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000354673	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-5UTR	ENST00000354673	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000354673	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000441144	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-5UTR	ENST00000441144	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000441144	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-intron	ENST00000491903	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-5UTR	ENST00000491903	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-intron	ENST00000491903	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000459718	ENST00000497685		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-5UTR	ENST00000459718	ENST00000264234		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
intron-intron	ENST00000459718	ENST00000460625		TCGA	RV	PAAD	TCGA-FB-AAQ1-01A	IGSF11	chr3	118753378	-	UPK1B	chr3	118905561	+
5CDS-5UTR	ENST00000373731	ENST00000377179		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000483450		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000426120		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000481554		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000487312		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000452316		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000429714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000466714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000383655		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000474196		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000436574		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000490260		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000458265		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000373731	ENST00000484052		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-5UTR	ENST00000474988	ENST00000377179		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000483450		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000426120		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000481554		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000487312		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000452316		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000429714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000466714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000383655		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000474196		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000436574		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000490260		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000458265		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
intron-intron	ENST00000474988	ENST00000484052		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-5UTR	ENST00000544295	ENST00000377179		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000483450		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000426120		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000481554		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000487312		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000452316		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000429714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000466714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000383655		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000474196		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000436574		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000490260		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000458265		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000544295	ENST00000484052		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-5UTR	ENST00000449081	ENST00000377179		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000483450		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000426120		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000481554		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000487312		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000452316		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000429714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000466714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000383655		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000474196		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000436574		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000490260		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000458265		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5CDS-intron	ENST00000449081	ENST00000484052		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-5UTR	ENST00000536244	ENST00000377179		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000483450		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000426120		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000481554		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000487312		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000452316		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000429714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000466714		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000383655		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000474196		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000436574		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000490260		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000458265		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
5UTR-intron	ENST00000536244	ENST00000484052		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	KCTD20	chr6	36438034	+	ZNF311	chr6	28971991	-
Frame-shit	ENST00000397661	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000397661	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000592199	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000592199	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000587760	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000587760	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000585575	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000585575	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000360105	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000360105	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000588228	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000588228	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000587260	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000587260	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000358552	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000358552	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
intron-3CDS	ENST00000588680	ENST00000251472		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
intron-3CDS	ENST00000588680	ENST00000591495		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	NFIX	chr19	13136366	+	MAST1	chr19	12962748	+
Frame-shit	ENST00000228705	ENST00000344096		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPM1H	chr12	63182006	-	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000228705	ENST00000393555		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPM1H	chr12	63182006	-	DYRK2	chr12	68050886	+
5CDS-intron	ENST00000228705	ENST00000537632		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPM1H	chr12	63182006	-	DYRK2	chr12	68050886	+
intron-3CDS	ENST00000551214	ENST00000344096		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPM1H	chr12	63182006	-	DYRK2	chr12	68050886	+
intron-5UTR	ENST00000551214	ENST00000393555		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPM1H	chr12	63182006	-	DYRK2	chr12	68050886	+
intron-intron	ENST00000551214	ENST00000537632		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPM1H	chr12	63182006	-	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000500597	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000500597	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-5UTR	ENST00000407977	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000407977	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-5UTR	ENST00000583753	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000583753	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-5UTR	ENST00000584437	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000584437	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-5UTR	ENST00000577716	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
5CDS-intron	ENST00000577716	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-5UTR	ENST00000581868	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000581868	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-5UTR	ENST00000577625	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000577625	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-5UTR	ENST00000580014	ENST00000513024		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000509638		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000508501		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000512946		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000313860		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000512632		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000512820		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000503057		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000511496		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000514096		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000509277		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000396595		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000381753		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000509454		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
intron-intron	ENST00000580014	ENST00000515785		TCGA	RV	PAAD	TCGA-IB-7887-01A	RNF43	chr17	56492687	-	LIMCH1	chr4	41496553	+
Frame-shit	ENST00000399799	ENST00000592179		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	ROCK1	chr18	18595392	-	ANKRD29	chr18	21181273	-
In-frame	ENST00000399799	ENST00000322980		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	ROCK1	chr18	18595392	-	ANKRD29	chr18	21181273	-
5CDS-intron	ENST00000399799	ENST00000585908		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	ROCK1	chr18	18595392	-	ANKRD29	chr18	21181273	-
5CDS-intron	ENST00000399799	ENST00000284207		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	ROCK1	chr18	18595392	-	ANKRD29	chr18	21181273	-
5CDS-intron	ENST00000399799	ENST00000586511		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	ROCK1	chr18	18595392	-	ANKRD29	chr18	21181273	-
5CDS-5UTR	ENST00000525071	ENST00000444303		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000525071	ENST00000396554		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-intron	ENST00000525071	ENST00000530864		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000429869	ENST00000444303		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000429869	ENST00000396554		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-intron	ENST00000429869	ENST00000530864		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000525815	ENST00000444303		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000525815	ENST00000396554		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-intron	ENST00000525815	ENST00000530864		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000265836	ENST00000444303		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000265836	ENST00000396554		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-intron	ENST00000265836	ENST00000530864		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000375682	ENST00000444303		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-5UTR	ENST00000375682	ENST00000396554		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
5CDS-intron	ENST00000375682	ENST00000530864		TCGA	RV	PAAD	TCGA-IB-7652-01A	SLC35F2	chr11	107673727	-	AMPD3	chr11	10483062	+
In-frame	ENST00000544865	ENST00000437048		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000544865	ENST00000574029		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000544865	ENST00000576149		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-5UTR	ENST00000544865	ENST00000446250		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000544865	ENST00000291074		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000544865	ENST00000571805		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000544865	ENST00000401468		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
In-frame	ENST00000263073	ENST00000437048		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000263073	ENST00000574029		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000263073	ENST00000576149		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-5UTR	ENST00000263073	ENST00000446250		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000263073	ENST00000291074		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000263073	ENST00000571805		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000263073	ENST00000401468		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
In-frame	ENST00000354901	ENST00000437048		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000354901	ENST00000574029		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000354901	ENST00000576149		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-5UTR	ENST00000354901	ENST00000446250		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000354901	ENST00000291074		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000354901	ENST00000571805		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000354901	ENST00000401468		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
In-frame	ENST00000536871	ENST00000437048		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000536871	ENST00000574029		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000536871	ENST00000576149		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-5UTR	ENST00000536871	ENST00000446250		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000536871	ENST00000291074		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000536871	ENST00000571805		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000536871	ENST00000401468		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-3CDS	ENST00000573166	ENST00000437048		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-intron	ENST00000573166	ENST00000574029		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-intron	ENST00000573166	ENST00000576149		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-5UTR	ENST00000573166	ENST00000446250		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-intron	ENST00000573166	ENST00000291074		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-intron	ENST00000573166	ENST00000571805		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-intron	ENST00000573166	ENST00000401468		TCGA	RV	PAAD	TCGA-3A-A9IN-01A	SMG6	chr17	2075952	-	VPS53	chr17	565135	-
intron-3CDS	ENST00000464611	ENST00000290122		TCGA	RV	PAAD	TCGA-HZ-A77O-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-3CDS	ENST00000464611	ENST00000374663		TCGA	RV	PAAD	TCGA-HZ-A77O-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-3CDS	ENST00000331789	ENST00000290122		TCGA	RV	PAAD	TCGA-HZ-A77O-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-3CDS	ENST00000331789	ENST00000374663		TCGA	RV	PAAD	TCGA-HZ-A77O-01A	ACTB	chr7	5567255	-	CELA3A	chr1	22328149	+
intron-5UTR	ENST00000464611	ENST00000305354		TCGA	RV	PAAD	TCGA-HZ-7924-01A	ACTB	chr7	5567255	-	TM4SF4	chr3	149192486	+
intron-5UTR	ENST00000331789	ENST00000305354		TCGA	RV	PAAD	TCGA-HZ-7924-01A	ACTB	chr7	5567255	-	TM4SF4	chr3	149192486	+
intron-5UTR	ENST00000464611	ENST00000305354		TCGA	RV	PAAD	TCGA-IB-7654-01A	ACTB	chr7	5567255	-	TM4SF4	chr3	149192486	+
intron-5UTR	ENST00000331789	ENST00000305354		TCGA	RV	PAAD	TCGA-IB-7654-01A	ACTB	chr7	5567255	-	TM4SF4	chr3	149192486	+
In-frame	ENST00000556611	ENST00000261699		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000556611	ENST00000267436		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000556611	ENST00000421284		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000556611	ENST00000555423		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000556611	ENST00000555610		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
5CDS-intron	ENST00000556611	ENST00000556393		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000539826	ENST00000261699		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000539826	ENST00000267436		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000539826	ENST00000421284		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000539826	ENST00000555423		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000539826	ENST00000555610		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
5CDS-intron	ENST00000539826	ENST00000556393		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000396582	ENST00000261699		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000396582	ENST00000267436		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000396582	ENST00000421284		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000396582	ENST00000555423		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000396582	ENST00000555610		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-intron	ENST00000396582	ENST00000556393		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000432921	ENST00000261699		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000432921	ENST00000267436		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000432921	ENST00000421284		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000432921	ENST00000555423		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000432921	ENST00000555610		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
5CDS-intron	ENST00000432921	ENST00000556393		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000345122	ENST00000261699		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000345122	ENST00000267436		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000345122	ENST00000421284		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000345122	ENST00000555423		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
In-frame	ENST00000345122	ENST00000555610		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
5CDS-intron	ENST00000345122	ENST00000556393		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000433497	ENST00000261699		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000433497	ENST00000267436		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000433497	ENST00000421284		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000433497	ENST00000555423		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-3CDS	ENST00000433497	ENST00000555610		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
intron-intron	ENST00000433497	ENST00000556393		TCGA	RV	PAAD	TCGA-IB-7646-01A	ARHGAP5	chr14	32563592	+	L2HGDH	chr14	50760964	-
Frame-shit	ENST00000437600	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000437600	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000437600	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000437600	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000437600	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000292538	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000292538	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000292538	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000292538	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000292538	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000393824	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000393824	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000393824	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000393824	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000393824	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000547394	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000547394	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000547394	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000547394	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000547394	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000360264	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000360264	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000360264	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000360264	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000360264	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000425244	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000425244	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000425244	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000425244	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000425244	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000292535	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000292535	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000292535	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000292535	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000292535	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000549414	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000549414	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000549414	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000549414	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000549414	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000556210	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000556210	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000556210	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000556210	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000556210	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000550008	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000550008	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000550008	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000550008	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000550008	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000546411	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000546411	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000546411	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000546411	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000546411	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
3UTR-3CDS	ENST00000560541	ENST00000380050		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
3UTR-3CDS	ENST00000560541	ENST00000265741		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
3UTR-3CDS	ENST00000560541	ENST00000406263		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
3UTR-intron	ENST00000560541	ENST00000436577		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
3UTR-intron	ENST00000560541	ENST00000496279		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	CUX1	chr7	101758553	+	CDK14	chr7	90376996	+
In-frame	ENST00000349699	ENST00000293328		TCGA	RV	PAAD	TCGA-XD-AAUI-01A	DDX52	chr17	35988605	-	STAT5B	chr17	40354826	-
In-frame	ENST00000394367	ENST00000293328		TCGA	RV	PAAD	TCGA-XD-AAUI-01A	DDX52	chr17	35988605	-	STAT5B	chr17	40354826	-
5CDS-5UTR	ENST00000442713	ENST00000579820		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
5CDS-5UTR	ENST00000442713	ENST00000318240		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
5CDS-5UTR	ENST00000442713	ENST00000582392		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
5CDS-5UTR	ENST00000269445	ENST00000579820		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
5CDS-5UTR	ENST00000269445	ENST00000318240		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
5CDS-5UTR	ENST00000269445	ENST00000582392		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-5UTR	ENST00000584977	ENST00000579820		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-5UTR	ENST00000584977	ENST00000318240		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-5UTR	ENST00000584977	ENST00000582392		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-5UTR	ENST00000578396	ENST00000579820		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-5UTR	ENST00000578396	ENST00000318240		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-5UTR	ENST00000578396	ENST00000582392		TCGA	RV	PAAD	TCGA-YH-A8SY-01A	DYM	chr18	46798548	-	C18orf32	chr18	47010141	-
intron-3CDS	ENST00000499810	ENST00000297185		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
intron-intron	ENST00000499810	ENST00000501917		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
Frame-shit	ENST00000360541	ENST00000297185		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
5CDS-intron	ENST00000360541	ENST00000501917		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
intron-3CDS	ENST00000503014	ENST00000297185		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
intron-intron	ENST00000503014	ENST00000501917		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
intron-3CDS	ENST00000514005	ENST00000297185		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
intron-intron	ENST00000514005	ENST00000501917		TCGA	RV	PAAD	TCGA-LB-A9Q5-01A	ETF1	chr5	137878522	-	HSPA9	chr5	137897478	-
In-frame	ENST00000259963	ENST00000229922		TCGA	RV	PAAD	TCGA-IB-7654-01A	FAM8A1	chr6	17601352	+	CAP2	chr6	17541204	+
In-frame	ENST00000259963	ENST00000489374		TCGA	RV	PAAD	TCGA-IB-7654-01A	FAM8A1	chr6	17601352	+	CAP2	chr6	17541204	+
In-frame	ENST00000259963	ENST00000378990		TCGA	RV	PAAD	TCGA-IB-7654-01A	FAM8A1	chr6	17601352	+	CAP2	chr6	17541204	+
5CDS-intron	ENST00000259963	ENST00000493172		TCGA	RV	PAAD	TCGA-IB-7654-01A	FAM8A1	chr6	17601352	+	CAP2	chr6	17541204	+
5CDS-intron	ENST00000259963	ENST00000465994		TCGA	RV	PAAD	TCGA-IB-7654-01A	FAM8A1	chr6	17601352	+	CAP2	chr6	17541204	+
5CDS-5UTR	ENST00000309909	ENST00000261211		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-5UTR	ENST00000309909	ENST00000543119		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-intron	ENST00000309909	ENST00000542666		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-intron	ENST00000309909	ENST00000553042		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-5UTR	ENST00000455858	ENST00000261211		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-5UTR	ENST00000455858	ENST00000543119		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-intron	ENST00000455858	ENST00000542666		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5CDS-intron	ENST00000455858	ENST00000553042		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
intron-5UTR	ENST00000551773	ENST00000261211		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
intron-5UTR	ENST00000551773	ENST00000543119		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
intron-intron	ENST00000551773	ENST00000542666		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
intron-intron	ENST00000551773	ENST00000553042		TCGA	RV	PAAD	TCGA-IB-8127-01A	FBXW8	chr12	117383333	+	CDK17	chr12	96728643	-
5UTR-intron	ENST00000319838	ENST00000373318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000391987		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000373320		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000406958		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000272972		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000361678		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000403283		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000401804		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000536462		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000405523		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000405002		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000462004		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000373318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000391987		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000373320		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000406958		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000272972		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000361678		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000403283		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000401804		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000536462		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000405523		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000405002		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000462004		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000373318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000391987		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000373320		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000406958		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000272972		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000361678		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000403283		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000401804		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000536462		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000405523		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000405002		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000462004		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000373318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000391987		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000373320		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000406958		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000272972		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000361678		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000403283		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000401804		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000536462		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000405523		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000405002		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000462004		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000373318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000391987		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000373320		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000406958		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000272972		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000361678		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000403283		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000401804		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000536462		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000405523		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000405002		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000462004		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000263370	ENST00000595535		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000352632		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000344104		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000338932		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000598249		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000392025		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000392023		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000263370	ENST00000593816		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	SPTBN4	chr19	41071329	+
5CDS-intron	ENST00000346145	ENST00000419333		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000346145	ENST00000292823		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000346145	ENST00000431016		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000346145	ENST00000491544		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000349607	ENST00000419333		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000349607	ENST00000292823		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000349607	ENST00000431016		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000349607	ENST00000491544		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000463781	ENST00000419333		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000463781	ENST00000292823		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000463781	ENST00000431016		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000463781	ENST00000491544		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000475231	ENST00000419333		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000475231	ENST00000292823		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000475231	ENST00000431016		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5CDS-intron	ENST00000475231	ENST00000491544		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5UTR-intron	ENST00000478685	ENST00000419333		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5UTR-intron	ENST00000478685	ENST00000292823		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5UTR-intron	ENST00000478685	ENST00000431016		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
5UTR-intron	ENST00000478685	ENST00000491544		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	MUC4	chr3	195538607	-	PCYT1A	chr3	195941244	-
Frame-shit	ENST00000262077	ENST00000442822		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000262077	ENST00000447241		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000262077	ENST00000375015		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000262077	ENST00000533191		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000262077	ENST00000527965		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000262077	ENST00000375007		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000425722		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000449847		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000427082		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000438312		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000424621		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000413045		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000399749		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000383262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000383130		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000448986		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000547550		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000548975		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000548927		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000457429		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000262077	ENST00000451857		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000537253	ENST00000442822		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000537253	ENST00000447241		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000537253	ENST00000375015		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000537253	ENST00000533191		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000537253	ENST00000527965		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000537253	ENST00000375007		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000425722		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000449847		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000427082		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000438312		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000424621		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000413045		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000399749		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000383262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000383130		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000448986		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000547550		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000548975		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000548927		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000457429		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000537253	ENST00000451857		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	NUP153	chr6	17706508	-	C6orf10	chr6	32337760	-
5UTR-5UTR	ENST00000545334	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000545334	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000545334	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000545334	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000545334	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000537927	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000537927	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000537927	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000537927	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000537927	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000318304	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000318304	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000318304	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000318304	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000318304	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000535047	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000535047	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000535047	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000535047	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000535047	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000542629	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000542629	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000542629	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000542629	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000542629	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000228425	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000228425	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000228425	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-intron	ENST00000228425	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-5UTR	ENST00000228425	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000541633	ENST00000545802		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000541633	ENST00000546076		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
3UTR-intron	ENST00000541633	ENST00000544427		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
3UTR-intron	ENST00000541633	ENST00000535215		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
3UTR-5UTR	ENST00000541633	ENST00000261177		TCGA	RV	PAAD	TCGA-IB-7890-01A	PPFIBP1	chr12	27677298	+	TSPAN11	chr12	31106915	+
5UTR-3CDS	ENST00000373242	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373242	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373242	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373242	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373242	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-3CDS	ENST00000373238	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373238	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373238	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373238	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373238	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-3CDS	ENST00000373241	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373241	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373241	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373241	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000373241	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-3CDS	ENST00000431664	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000431664	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000431664	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000431664	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000431664	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-3CDS	ENST00000458634	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000458634	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000458634	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000458634	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
5UTR-intron	ENST00000458634	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-3CDS	ENST00000373236	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373236	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373236	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373236	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000373236	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-3CDS	ENST00000477464	ENST00000395011		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000477464	ENST00000395010		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000477464	ENST00000355790		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000477464	ENST00000373224		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
intron-intron	ENST00000477464	ENST00000358141		TCGA	RV	PAAD	TCGA-F2-6879-01A	SAR1A	chr10	71930169	-	LRRC20	chr10	72083786	-
In-frame	ENST00000336915	ENST00000261712		TCGA	RV	PAAD	TCGA-XD-AAUI-01A	SKAP1	chr17	46423267	-	PSMD11	chr17	30773963	+
In-frame	ENST00000336915	ENST00000457654		TCGA	RV	PAAD	TCGA-XD-AAUI-01A	SKAP1	chr17	46423267	-	PSMD11	chr17	30773963	+
In-frame	ENST00000584924	ENST00000261712		TCGA	RV	PAAD	TCGA-XD-AAUI-01A	SKAP1	chr17	46423267	-	PSMD11	chr17	30773963	+
In-frame	ENST00000584924	ENST00000457654		TCGA	RV	PAAD	TCGA-XD-AAUI-01A	SKAP1	chr17	46423267	-	PSMD11	chr17	30773963	+
5UTR-5UTR	ENST00000542191	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000542191	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000542191	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000542191	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000542191	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000542191	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000542191	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000542191	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000542191	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000542191	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000261368	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000261368	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000261368	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261368	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261368	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261368	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261368	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261368	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261368	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000261368	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379538	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379538	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379538	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379538	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379538	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379538	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379538	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379538	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379538	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000379538	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379533	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379533	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379533	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379533	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379533	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379533	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379533	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379533	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379533	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000379533	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379536	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379536	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000379536	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379536	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379536	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379536	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379536	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379536	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000379536	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000379536	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000261367	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000261367	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000261367	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261367	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261367	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261367	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261367	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261367	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000261367	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000261367	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000414317	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000414317	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000414317	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000414317	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000414317	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000414317	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000414317	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000414317	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000414317	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000414317	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000503116	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000503116	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000503116	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000503116	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000503116	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000503116	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000503116	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000503116	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000503116	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000503116	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000504884	ENST00000395412		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000504884	ENST00000345990		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-5UTR	ENST00000504884	ENST00000395411		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000504884	ENST00000511130		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000504884	ENST00000512718		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000504884	ENST00000521364		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000504884	ENST00000510842		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000504884	ENST00000361991		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000504884	ENST00000360683		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-3UTR	ENST00000504884	ENST00000508708		TCGA	RV	PAAD	TCGA-IB-AAUU-01A	SNCAIP	chr5	121739560	+	CSNK1G3	chr5	122881111	+
5CDS-intron	ENST00000358252	ENST00000264818		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000358252	ENST00000524462		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000358252	ENST00000525621		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000358252	ENST00000529370		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000358252	ENST00000529422		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000532437	ENST00000264818		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000532437	ENST00000524462		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000532437	ENST00000525621		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000532437	ENST00000529370		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000532437	ENST00000529422		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530920	ENST00000264818		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530920	ENST00000524462		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530920	ENST00000525621		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530920	ENST00000529370		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
intron-intron	ENST00000530920	ENST00000529422		TCGA	RV	PAAD	TCGA-IB-7644-01A	TNKS1BP1	chr11	57067118	-	TYK2	chr19	10491352	-
intron-3CDS	ENST00000581865	ENST00000335221		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
intron-3CDS	ENST00000581865	ENST00000321892		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
intron-3CDS	ENST00000581865	ENST00000306378		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
intron-3CDS	ENST00000581865	ENST00000424123		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
intron-intron	ENST00000581865	ENST00000577770		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000312655	ENST00000335221		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000312655	ENST00000321892		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000312655	ENST00000306378		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000312655	ENST00000424123		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
5CDS-intron	ENST00000312655	ENST00000577770		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000585166	ENST00000335221		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000585166	ENST00000321892		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000585166	ENST00000306378		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000585166	ENST00000424123		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
5CDS-intron	ENST00000585166	ENST00000577770		TCGA	RV	PAAD	TCGA-HZ-A4BH-01A	YPEL2	chr17	57430887	+	BPTF	chr17	65850056	+
Frame-shit	ENST00000539068	ENST00000360359		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000539068	ENST00000535627		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000539068	ENST00000470698		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000536438	ENST00000360359		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000536438	ENST00000535627		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000536438	ENST00000470698		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000357266	ENST00000360359		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000357266	ENST00000535627		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000357266	ENST00000470698		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
intron-3CDS	ENST00000540787	ENST00000360359		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
intron-3CDS	ENST00000540787	ENST00000535627		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
intron-intron	ENST00000540787	ENST00000470698		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000542713	ENST00000360359		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000542713	ENST00000535627		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
5CDS-intron	ENST00000542713	ENST00000470698		TCGA	RV	PAAD	TCGA-HV-A5A6-01A	FKBP5	chr6	35586873	-	ANKS1A	chr6	34935016	+
Frame-shit	ENST00000254636	ENST00000165698		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000254636	ENST00000535845		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000254636	ENST00000541910		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000254636	ENST00000538924		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000254636	ENST00000540790		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000254636	ENST00000473407		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000449247	ENST00000165698		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000449247	ENST00000535845		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000449247	ENST00000541910		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000449247	ENST00000538924		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000449247	ENST00000540790		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000449247	ENST00000473407		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000410111	ENST00000165698		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000410111	ENST00000535845		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000410111	ENST00000541910		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000410111	ENST00000538924		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000410111	ENST00000540790		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000410111	ENST00000473407		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000442664	ENST00000165698		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000442664	ENST00000535845		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000442664	ENST00000541910		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000442664	ENST00000538924		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000442664	ENST00000540790		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000442664	ENST00000473407		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000409051	ENST00000165698		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409051	ENST00000535845		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409051	ENST00000541910		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409051	ENST00000538924		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409051	ENST00000540790		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409051	ENST00000473407		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
intron-3CDS	ENST00000490238	ENST00000165698		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
intron-intron	ENST00000490238	ENST00000535845		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
intron-intron	ENST00000490238	ENST00000541910		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
intron-intron	ENST00000490238	ENST00000538924		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
intron-5UTR	ENST00000490238	ENST00000540790		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
intron-5UTR	ENST00000490238	ENST00000473407		TCGA	RV	PAAD	TCGA-HZ-8637-01A	IMMT	chr2	86378420	-	REEP1	chr2	86509365	-
Frame-shit	ENST00000403222	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000403222	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000407373	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000407373	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000332585	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000332585	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000382310	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000382310	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000446658	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000446658	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000401475	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000401475	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000437268	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000437268	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000535268	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000535268	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
3UTR-3CDS	ENST00000496575	ENST00000403892		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
3UTR-3CDS	ENST00000496575	ENST00000249042		TCGA	RV	PAAD	TCGA-YB-A89D-01A	OSBP2	chr22	31289720	+	TST	chr22	37407366	-
Frame-shit	ENST00000367584	ENST00000357847		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367584	ENST00000344492		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367584	ENST00000275235		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367584	ENST00000367598		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367584	ENST00000494282		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367584	ENST00000367596		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
Frame-shit	ENST00000427704	ENST00000357847		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000427704	ENST00000344492		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000427704	ENST00000275235		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000427704	ENST00000367598		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000427704	ENST00000494282		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000427704	ENST00000367596		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
Frame-shit	ENST00000305766	ENST00000357847		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000305766	ENST00000344492		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000305766	ENST00000275235		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000305766	ENST00000367598		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000305766	ENST00000494282		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000305766	ENST00000367596		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
Frame-shit	ENST00000440869	ENST00000357847		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000440869	ENST00000344492		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000440869	ENST00000275235		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000440869	ENST00000367598		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000440869	ENST00000494282		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000440869	ENST00000367596		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
Frame-shit	ENST00000367582	ENST00000357847		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367582	ENST00000344492		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367582	ENST00000275235		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367582	ENST00000367598		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367582	ENST00000494282		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000367582	ENST00000367596		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
Frame-shit	ENST00000397980	ENST00000357847		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000397980	ENST00000344492		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000397980	ENST00000275235		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000397980	ENST00000367598		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000397980	ENST00000494282		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
5CDS-intron	ENST00000397980	ENST00000367596		TCGA	RV	PAAD	TCGA-IB-7654-01A	PHACTR2	chr6	144033320	+	AIG1	chr6	143457972	+
Frame-shit	ENST00000309364	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000309364	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000309364	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000309364	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000359180	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000359180	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000359180	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000359180	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000317589	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000317589	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000317589	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000317589	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000355397	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000355397	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000355397	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000355397	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000429027	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000429027	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000429027	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000429027	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5UTR-3CDS	ENST00000539256	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5UTR-3CDS	ENST00000539256	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5UTR-intron	ENST00000539256	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5UTR-intron	ENST00000539256	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000299275	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000299275	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000299275	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000299275	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000538714	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000538714	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000538714	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000538714	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-3CDS	ENST00000543806	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-3CDS	ENST00000543806	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-intron	ENST00000543806	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-intron	ENST00000543806	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-3CDS	ENST00000424268	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-3CDS	ENST00000424268	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-intron	ENST00000424268	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-intron	ENST00000424268	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000540972	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
Frame-shit	ENST00000540972	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000540972	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
5CDS-intron	ENST00000540972	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-3CDS	ENST00000510738	ENST00000229243		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-3CDS	ENST00000510738	ENST00000414226		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-intron	ENST00000510738	ENST00000542357		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
intron-intron	ENST00000510738	ENST00000536350		TCGA	RV	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6754503	-
In-frame	ENST00000348657	ENST00000369838		TCGA	RV	PAAD	TCGA-2J-AABP-01A	POLDIP3	chr22	43010805	-	SH3BGRL2	chr6	80383331	+
In-frame	ENST00000252115	ENST00000369838		TCGA	RV	PAAD	TCGA-2J-AABP-01A	POLDIP3	chr22	43010805	-	SH3BGRL2	chr6	80383331	+
In-frame	ENST00000339677	ENST00000369838		TCGA	RV	PAAD	TCGA-2J-AABP-01A	POLDIP3	chr22	43010805	-	SH3BGRL2	chr6	80383331	+
intron-3CDS	ENST00000451060	ENST00000369838		TCGA	RV	PAAD	TCGA-2J-AABP-01A	POLDIP3	chr22	43010805	-	SH3BGRL2	chr6	80383331	+
intron-3CDS	ENST00000491021	ENST00000369838		TCGA	RV	PAAD	TCGA-2J-AABP-01A	POLDIP3	chr22	43010805	-	SH3BGRL2	chr6	80383331	+
intron-5UTR	ENST00000380393	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
intron-5UTR	ENST00000380393	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000216877	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000216877	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000358719	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000358719	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000399903	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000399903	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000425918	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000425918	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000318266	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5UTR-5UTR	ENST00000318266	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
intron-5UTR	ENST00000356147	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
intron-5UTR	ENST00000356147	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-6880-01A	PTPRA	chr20	2854406	+	PRSS1	chr7	142457330	+
5CDS-5UTR	ENST00000398958	ENST00000373839		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-3UTR	ENST00000398958	ENST00000493669		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-intron	ENST00000398958	ENST00000373836		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-5UTR	ENST00000373833	ENST00000373839		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-3UTR	ENST00000373833	ENST00000493669		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-intron	ENST00000373833	ENST00000373836		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-5UTR	ENST00000373832	ENST00000373839		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-3UTR	ENST00000373832	ENST00000493669		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-intron	ENST00000373832	ENST00000373836		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-5UTR	ENST00000373831	ENST00000373839		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-3UTR	ENST00000373831	ENST00000493669		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-intron	ENST00000373831	ENST00000373836		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
3UTR-5UTR	ENST00000429051	ENST00000373839		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
3UTR-3UTR	ENST00000429051	ENST00000493669		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
3UTR-intron	ENST00000429051	ENST00000373836		TCGA	RV	PAAD	TCGA-F2-6879-01A	RCC1	chr1	28858862	+	PHACTR4	chr1	28733921	+
5CDS-5UTR	ENST00000399799	ENST00000284224		TCGA	RV	PAAD	TCGA-2J-AAB4-01A	ROCK1	chr18	18539801	-	CHST9	chr18	24722869	-
5CDS-5UTR	ENST00000399799	ENST00000581714		TCGA	RV	PAAD	TCGA-2J-AAB4-01A	ROCK1	chr18	18539801	-	CHST9	chr18	24722869	-
5CDS-5UTR	ENST00000399799	ENST00000580774		TCGA	RV	PAAD	TCGA-2J-AAB4-01A	ROCK1	chr18	18539801	-	CHST9	chr18	24722869	-
Frame-shit	ENST00000331159	ENST00000315392		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000331159	ENST00000493200		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000331159	ENST00000539608		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000331159	ENST00000444911		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000331159	ENST00000394316		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
Frame-shit	ENST00000577233	ENST00000315392		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577233	ENST00000493200		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577233	ENST00000539608		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577233	ENST00000444911		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000577233	ENST00000394316		TCGA	RV	PAAD	TCGA-2L-AAQE-01A	SOCS7	chr17	36533668	+	PLXDC1	chr17	37265644	-
Frame-shit	ENST00000040877	ENST00000366603		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
Frame-shit	ENST00000040877	ENST00000264183		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
Frame-shit	ENST00000040877	ENST00000349213		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
5CDS-5UTR	ENST00000040877	ENST00000494543		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
intron-3CDS	ENST00000483404	ENST00000366603		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
intron-3CDS	ENST00000483404	ENST00000264183		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
intron-3CDS	ENST00000483404	ENST00000349213		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
intron-5UTR	ENST00000483404	ENST00000494543		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	TARBP1	chr1	234553830	-	ARID4B	chr1	235341228	-
Frame-shit	ENST00000369043	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-5UTR	ENST00000369043	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-5UTR	ENST00000369043	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-intron	ENST00000369043	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-3CDS	ENST00000535655	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000535655	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000535655	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-intron	ENST00000535655	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-3CDS	ENST00000224652	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000224652	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000224652	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-intron	ENST00000224652	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
Frame-shit	ENST00000369040	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-5UTR	ENST00000369040	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-5UTR	ENST00000369040	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-intron	ENST00000369040	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
Frame-shit	ENST00000540606	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-5UTR	ENST00000540606	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-5UTR	ENST00000540606	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
5CDS-intron	ENST00000540606	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-3CDS	ENST00000543447	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000543447	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000543447	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-intron	ENST00000543447	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-3CDS	ENST00000481784	ENST00000369023		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000481784	ENST00000489266		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-5UTR	ENST00000481784	ENST00000538652		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
intron-intron	ENST00000481784	ENST00000369017		TCGA	RV	PAAD	TCGA-FB-A4P5-01A	ATE1	chr10	123658356	-	NSMCE4A	chr10	123721032	-
In-frame	ENST00000261891	ENST00000300030		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000261891	ENST00000558779		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000261891	ENST00000380290		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000261891	ENST00000557835		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000261891	ENST00000559950		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
Frame-shit	ENST00000457488	ENST00000300030		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000457488	ENST00000558779		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000457488	ENST00000380290		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000457488	ENST00000557835		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000457488	ENST00000559950		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
Frame-shit	ENST00000558069	ENST00000300030		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000558069	ENST00000558779		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000558069	ENST00000380290		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000558069	ENST00000557835		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000558069	ENST00000559950		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5UTR-3CDS	ENST00000558482	ENST00000300030		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5UTR-intron	ENST00000558482	ENST00000558779		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5UTR-intron	ENST00000558482	ENST00000380290		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5UTR-intron	ENST00000558482	ENST00000557835		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
5UTR-intron	ENST00000558482	ENST00000559950		TCGA	RV	PAAD	TCGA-IB-A5ST-01A	DAPK2	chr15	64332369	-	FAM96A	chr15	64367736	-
In-frame	ENST00000254528	ENST00000320876		TCGA	RV	PAAD	TCGA-IB-7654-01A	EMILIN2	chr18	2909817	+	SMCHD1	chr18	2802526	+
5CDS-intron	ENST00000254528	ENST00000261598		TCGA	RV	PAAD	TCGA-IB-7654-01A	EMILIN2	chr18	2909817	+	SMCHD1	chr18	2802526	+
5CDS-intron	ENST00000254528	ENST00000609587		TCGA	RV	PAAD	TCGA-IB-7654-01A	EMILIN2	chr18	2909817	+	SMCHD1	chr18	2802526	+
3UTR-3CDS	ENST00000308080	ENST00000320876		TCGA	RV	PAAD	TCGA-IB-7654-01A	EMILIN2	chr18	2909817	+	SMCHD1	chr18	2802526	+
3UTR-intron	ENST00000308080	ENST00000261598		TCGA	RV	PAAD	TCGA-IB-7654-01A	EMILIN2	chr18	2909817	+	SMCHD1	chr18	2802526	+
3UTR-intron	ENST00000308080	ENST00000609587		TCGA	RV	PAAD	TCGA-IB-7654-01A	EMILIN2	chr18	2909817	+	SMCHD1	chr18	2802526	+
Frame-shit	ENST00000454366	ENST00000381061		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	GTSE1	chr22	46693376	+	ATXN10	chr22	46202839	+
Frame-shit	ENST00000454366	ENST00000252934		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	GTSE1	chr22	46693376	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000454366	ENST00000498009		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	GTSE1	chr22	46693376	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000454366	ENST00000402380		TCGA	RV	PAAD	TCGA-IB-AAUQ-01A	GTSE1	chr22	46693376	+	ATXN10	chr22	46202839	+
5CDS-intron	ENST00000233735	ENST00000404460		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000303908		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000409158		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000403716		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000234115		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000439822		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000487980		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000438882		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000538982		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000409612		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000233735	ENST00000409279		TCGA	RV	PAAD	TCGA-F2-A44H-01A	REG1A	chr2	79350545	+	PLEKHB2	chr2	131876464	+
In-frame	ENST00000399799	ENST00000319481		TCGA	RV	PAAD	TCGA-XN-A8T3-01A	ROCK1	chr18	18603581	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000399799	ENST00000399443		TCGA	RV	PAAD	TCGA-XN-A8T3-01A	ROCK1	chr18	18603581	-	OSBPL1A	chr18	21883682	-
5CDS-5UTR	ENST00000399799	ENST00000357041		TCGA	RV	PAAD	TCGA-XN-A8T3-01A	ROCK1	chr18	18603581	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000399799	ENST00000399441		TCGA	RV	PAAD	TCGA-XN-A8T3-01A	ROCK1	chr18	18603581	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000399799	ENST00000582618		TCGA	RV	PAAD	TCGA-XN-A8T3-01A	ROCK1	chr18	18603581	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000301923	ENST00000216029		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	TNRC6B	chr22	40552186	+	CBY1	chr22	39061551	+
5CDS-intron	ENST00000402203	ENST00000216029		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	TNRC6B	chr22	40552186	+	CBY1	chr22	39061551	+
intron-intron	ENST00000454349	ENST00000216029		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	TNRC6B	chr22	40552186	+	CBY1	chr22	39061551	+
intron-intron	ENST00000335727	ENST00000216029		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	TNRC6B	chr22	40552186	+	CBY1	chr22	39061551	+
intron-intron	ENST00000497559	ENST00000216029		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	TNRC6B	chr22	40552186	+	CBY1	chr22	39061551	+
Frame-shit	ENST00000400000	ENST00000319888		TCGA	RV	PAAD	TCGA-FB-AAQ0-01A	VAPA	chr18	9914332	+	METTL4	chr18	2547528	-
Frame-shit	ENST00000400000	ENST00000574538		TCGA	RV	PAAD	TCGA-FB-AAQ0-01A	VAPA	chr18	9914332	+	METTL4	chr18	2547528	-
Frame-shit	ENST00000340541	ENST00000319888		TCGA	RV	PAAD	TCGA-FB-AAQ0-01A	VAPA	chr18	9914332	+	METTL4	chr18	2547528	-
Frame-shit	ENST00000340541	ENST00000574538		TCGA	RV	PAAD	TCGA-FB-AAQ0-01A	VAPA	chr18	9914332	+	METTL4	chr18	2547528	-
intron-3CDS	ENST00000584796	ENST00000319888		TCGA	RV	PAAD	TCGA-FB-AAQ0-01A	VAPA	chr18	9914332	+	METTL4	chr18	2547528	-
intron-3CDS	ENST00000584796	ENST00000574538		TCGA	RV	PAAD	TCGA-FB-AAQ0-01A	VAPA	chr18	9914332	+	METTL4	chr18	2547528	-
5CDS-5UTR	ENST00000317025	ENST00000397166		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-5UTR	ENST00000317025	ENST00000520272		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000317025	ENST00000528888		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000317025	ENST00000517385		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000317025	ENST00000529845		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-5UTR	ENST00000433384	ENST00000397166		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-5UTR	ENST00000433384	ENST00000520272		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000433384	ENST00000528888		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000433384	ENST00000517385		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000433384	ENST00000529845		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-5UTR	ENST00000527502	ENST00000397166		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-5UTR	ENST00000527502	ENST00000520272		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000527502	ENST00000528888		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000527502	ENST00000517385		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
5CDS-intron	ENST00000527502	ENST00000529845		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-5UTR	ENST00000316985	ENST00000397166		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-5UTR	ENST00000316985	ENST00000520272		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-intron	ENST00000316985	ENST00000528888		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-intron	ENST00000316985	ENST00000517385		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-intron	ENST00000316985	ENST00000529845		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-5UTR	ENST00000525081	ENST00000397166		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-5UTR	ENST00000525081	ENST00000520272		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-intron	ENST00000525081	ENST00000528888		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-intron	ENST00000525081	ENST00000517385		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
intron-intron	ENST00000525081	ENST00000529845		TCGA	RV	PAAD	TCGA-PZ-A5RE-01A	WHSC1L1	chr8	38172165	-	DDHD2	chr8	38090505	+
In-frame	ENST00000540306	ENST00000416426		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000540306	ENST00000284073		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000540306	ENST00000322684		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000540306	ENST00000442934		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000540306	ENST00000579180		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
5CDS-3UTR	ENST00000540306	ENST00000579505		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000262415	ENST00000416426		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000262415	ENST00000284073		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000262415	ENST00000322684		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000262415	ENST00000442934		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
In-frame	ENST00000262415	ENST00000579180		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
5CDS-3UTR	ENST00000262415	ENST00000579505		TCGA	RV	PAAD	TCGA-HZ-A4BK-01A	DHX8	chr17	41567831	+	MSI2	chr17	55674229	+
5UTR-3CDS	ENST00000370982	ENST00000371847		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
5UTR-3CDS	ENST00000370982	ENST00000371843		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
5UTR-3CDS	ENST00000370982	ENST00000396199		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
5UTR-intron	ENST00000370982	ENST00000463938		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
intron-3CDS	ENST00000494936	ENST00000371847		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
intron-3CDS	ENST00000494936	ENST00000371843		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
intron-3CDS	ENST00000494936	ENST00000396199		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
intron-intron	ENST00000494936	ENST00000463938		TCGA	RV	PAAD	TCGA-2J-AABF-01A	GNG12	chr1	68243141	-	SPATA6	chr1	48851021	-
5UTR-intron	ENST00000319838	ENST00000373318		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000391987		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000373320		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000406958		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000272972		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000361678		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000403283		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000401804		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000536462		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000405523		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000405002		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000319838	ENST00000462004		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000373318		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000391987		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000373320		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000406958		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000272972		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000361678		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000403283		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000401804		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000536462		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000405523		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000405002		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5CDS-intron	ENST00000438013	ENST00000462004		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000373318		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000391987		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000373320		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000406958		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000272972		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000361678		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000403283		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000401804		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000536462		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000405523		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000405002		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
5UTR-intron	ENST00000403859	ENST00000462004		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000373318		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000391987		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000373320		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000406958		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000272972		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000361678		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000403283		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000401804		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000536462		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000405523		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000405002		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000407714	ENST00000462004		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000373318		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000391987		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000373320		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000406958		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000272972		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000361678		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000403283		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000401804		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000536462		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000405523		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000405002		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
intron-intron	ENST00000430267	ENST00000462004		TCGA	RV	PAAD	TCGA-2J-AABR-01A	GPR35	chr2	241558448	+	ANKMY1	chr2	241468926	-
In-frame	ENST00000520810	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000520810	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000520810	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000520810	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000520810	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000520810	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000520810	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000520810	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000520810	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000520810	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000520810	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000520810	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000416505	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000416505	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000416505	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000416505	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000416505	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000416505	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000519735	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000519735	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000519735	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000519735	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000519735	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000519735	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000520835	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000520835	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000520835	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000520835	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000520835	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000520835	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000379708	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000379708	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000379708	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000379708	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000379708	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000379708	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000518983	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000518983	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000518983	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000518983	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000518983	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000518983	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
In-frame	ENST00000522147	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000522147	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000522147	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000522147	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000522147	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
5CDS-intron	ENST00000522147	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000347528		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000289734		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000379758		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000396942		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000396945		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000352337		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-3CDS	ENST00000522785	ENST00000265709		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000522785	ENST00000457297		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000522785	ENST00000522231		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000522785	ENST00000522543		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000522785	ENST00000314214		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
intron-intron	ENST00000522785	ENST00000521407		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	ANK1	chr8	41591587	-
Frame-shit	ENST00000268182	ENST00000379122		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
Frame-shit	ENST00000268182	ENST00000332496		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000560263		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000411539		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000379122		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000332496		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000560263		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000411539		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000379122		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000332496		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000560263		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000411539		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-3UTR	ENST00000263370	ENST00000602240		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-3UTR	ENST00000263370	ENST00000204005		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000545697		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000308370		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000396819		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-intron	ENST00000263370	ENST00000243562		TCGA	RV	PAAD	TCGA-RB-AA9M-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-intron	ENST00000563941	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000563941	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000563941	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000563941	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000563941	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000545450	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000545450	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000545450	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000545450	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000545450	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000566549	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000566549	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000566549	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000566549	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000566549	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000382862	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000382862	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000382862	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000382862	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000382862	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A77E-01A	MSLN	chr16	818865	+	CLCN3	chr4	170623929	+
Frame-shit	ENST00000356175	ENST00000346872		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000394189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000439167		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000535189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000377944		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000377945		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000377952		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000377958		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000346243		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000350532		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000351680		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000467757		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000356175	ENST00000439016		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000356175	ENST00000583368		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000346872		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000394189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000439167		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000535189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000377944		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000377945		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000377952		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000377958		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000346243		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000350532		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000351680		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000467757		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
Frame-shit	ENST00000358273	ENST00000439016		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
5CDS-intron	ENST00000358273	ENST00000583368		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000346872		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000394189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000439167		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000535189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000377944		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000377945		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000377952		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000377958		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000346243		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000350532		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000351680		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000467757		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000431387	ENST00000439016		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000431387	ENST00000583368		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000346872		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000394189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000439167		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000535189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000377944		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000377945		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000377952		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000377958		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000346243		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000350532		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000351680		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000467757		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000581113	ENST00000439016		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000581113	ENST00000583368		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000346872		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000394189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000439167		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000535189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000377944		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000377945		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000377952		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000377958		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000346243		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000350532		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000351680		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000467757		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000417592	ENST00000439016		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000417592	ENST00000583368		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000346872		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000394189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000439167		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000535189		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000377944		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000377945		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000377952		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000377958		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000346243		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000350532		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000351680		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000467757		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-3CDS	ENST00000444181	ENST00000439016		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
intron-intron	ENST00000444181	ENST00000583368		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	NF1	chr17	29563039	+	IKZF3	chr17	37988404	-
5CDS-5UTR	ENST00000251849	ENST00000314124		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000435575		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000435218		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000251849	ENST00000476331		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000251849	ENST00000431022		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000264728		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000314124		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000435575		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000435218		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000442415	ENST00000476331		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000442415	ENST00000431022		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000264728		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000314124		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000435575		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000435218		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000534997	ENST00000476331		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000534997	ENST00000431022		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000264728		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000314124		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000435575		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000435218		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000542177	ENST00000476331		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000542177	ENST00000431022		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000264728		TCGA	RV	PAAD	TCGA-IB-A5SS-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000336061	ENST00000393330		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000336061	ENST00000247829		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000336061	ENST00000546561		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000336061	ENST00000552128		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000336061	ENST00000552786		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-5UTR	ENST00000542104	ENST00000393330		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000542104	ENST00000247829		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000542104	ENST00000546561		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000542104	ENST00000552128		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000542104	ENST00000552786		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000540088	ENST00000393330		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000540088	ENST00000247829		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000540088	ENST00000546561		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000540088	ENST00000552128		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000540088	ENST00000552786		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	RASSF3	chr12	65078674	+	TSPAN8	chr12	71835367	-
In-frame	ENST00000393445	ENST00000409236		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000393445	ENST00000356421		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000393445	ENST00000317233		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000393445	ENST00000409579		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5CDS-intron	ENST00000393445	ENST00000483600		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000258428	ENST00000409236		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000258428	ENST00000356421		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000258428	ENST00000317233		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
In-frame	ENST00000258428	ENST00000409579		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5CDS-intron	ENST00000258428	ENST00000483600		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5UTR-3CDS	ENST00000465835	ENST00000409236		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5UTR-3CDS	ENST00000465835	ENST00000356421		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5UTR-3CDS	ENST00000465835	ENST00000317233		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5UTR-3CDS	ENST00000465835	ENST00000409579		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5UTR-intron	ENST00000465835	ENST00000483600		TCGA	RV	PAAD	TCGA-HZ-8637-01A	REV1	chr2	100065798	-	AFF3	chr2	100185377	-
5UTR-5UTR	ENST00000392011	ENST00000443314		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000392011	ENST00000441020		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000392011	ENST00000450366		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000392011	ENST00000233714		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000392011	ENST00000431941		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000409212	ENST00000443314		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000409212	ENST00000441020		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000409212	ENST00000450366		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000409212	ENST00000233714		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000409212	ENST00000431941		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000344528	ENST00000443314		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000344528	ENST00000441020		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000344528	ENST00000450366		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000344528	ENST00000233714		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
5UTR-5UTR	ENST00000344528	ENST00000431941		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000489601	ENST00000443314		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000489601	ENST00000441020		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000489601	ENST00000450366		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000489601	ENST00000233714		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
intron-5UTR	ENST00000489601	ENST00000431941		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	SH3BP4	chr2	235904020	+	LANCL1	chr2	211341136	-
Frame-shit	ENST00000293748	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000293748	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000293748	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000418600	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
5CDS-intron	ENST00000418600	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-3CDS	ENST00000496374	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
3UTR-intron	ENST00000496374	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000428982	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000428982	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000461459	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000461459	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000551507	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000551507	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000455687	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000455687	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000395071	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000395071	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000374708		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000374712		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000374713		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000357486		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000361917		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000395197		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000374714		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-3CDS	ENST00000414753	ENST00000341947		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000477772		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000395194		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000383087		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551559		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549289		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000550561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549811		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000547261		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549381		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000547999		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551542		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000439039		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000448717		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000550517		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551536		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000550998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000547883		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000552556		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551758		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551572		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551786		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000494246		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000452937		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000447349		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549885		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000553210		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000550955		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000552765		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000552473		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000547846		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000496392		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000447741		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000383219		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549290		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000548739		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000552971		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000547561		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000553240		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549836		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000549491		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000550101		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000383088		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000425729		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551234		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551413		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000551262		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000546402		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000552796		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000552134		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000547597		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000546998		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000496849		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000435763		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000486982		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000548637		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
intron-intron	ENST00000414753	ENST00000548137		TCGA	RV	PAAD	TCGA-IB-AAUN-01A	SYNGAP1	chr6	33393680	+	COL11A2	chr6	33133983	-
Frame-shit	ENST00000240587	ENST00000269141		TCGA	RV	PAAD	TCGA-HV-A5A3-01A	TSHZ3	chr19	31840086	-	CDH2	chr18	25593873	-
Frame-shit	ENST00000240587	ENST00000399380		TCGA	RV	PAAD	TCGA-HV-A5A3-01A	TSHZ3	chr19	31840086	-	CDH2	chr18	25593873	-
Frame-shit	ENST00000558569	ENST00000269141		TCGA	RV	PAAD	TCGA-HV-A5A3-01A	TSHZ3	chr19	31840086	-	CDH2	chr18	25593873	-
Frame-shit	ENST00000558569	ENST00000399380		TCGA	RV	PAAD	TCGA-HV-A5A3-01A	TSHZ3	chr19	31840086	-	CDH2	chr18	25593873	-
5CDS-5UTR	ENST00000400590	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000400590	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000400590	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000400590	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000320220	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000320220	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000320220	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000320220	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000382466	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000382466	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000382466	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000382466	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5UTR-5UTR	ENST00000542645	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5UTR-5UTR	ENST00000542645	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5UTR-5UTR	ENST00000542645	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5UTR-5UTR	ENST00000542645	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000415724	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000415724	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000415724	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000415724	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000422251	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000422251	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000422251	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
5CDS-5UTR	ENST00000422251	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
intron-5UTR	ENST00000494731	ENST00000241124		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
intron-5UTR	ENST00000494731	ENST00000400066		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
intron-5UTR	ENST00000494731	ENST00000400065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
intron-5UTR	ENST00000494731	ENST00000356192		TCGA	RV	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20803888	-
In-frame	ENST00000326195	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
In-frame	ENST00000326195	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-3UTR	ENST00000326195	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000326195	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
In-frame	ENST00000376545	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
In-frame	ENST00000376545	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-3UTR	ENST00000376545	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000376545	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
In-frame	ENST00000396515	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
In-frame	ENST00000396515	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-3UTR	ENST00000396515	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5CDS-intron	ENST00000396515	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000457111	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000457111	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000457111	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457111	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000452530	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000452530	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000452530	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000452530	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000416932	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000416932	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000416932	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000416932	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000470464	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000470464	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000470464	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000470464	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000419893	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000419893	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000419893	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000419893	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000448939	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000448939	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000448939	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000448939	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000457970	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000457970	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000457970	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457970	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000475528	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000475528	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000475528	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000475528	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000457078	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000457078	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000457078	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000457078	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000412443	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000412443	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000412443	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000412443	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000546690	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000546690	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000546690	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000546690	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000421608	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000421608	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000421608	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421608	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000486105	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000486105	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000486105	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000486105	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000383588	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000383588	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000383588	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383588	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000383587	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000383587	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000383587	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000383587	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000400609	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000400609	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000400609	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000400609	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000485585	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000485585	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000485585	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000485585	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000426219	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000426219	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000426219	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000426219	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000421042	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000421042	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000421042	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000421042	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000552867	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000552867	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000552867	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000552867	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000454094	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000454094	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000454094	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000454094	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000494413	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000494413	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000494413	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000494413	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000423247	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000423247	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000423247	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000423247	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000420257	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000420257	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000420257	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000420257	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000456791	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000456791	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000456791	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000456791	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000495194	ENST00000376560		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3CDS	ENST00000495194	ENST00000376557		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-3UTR	ENST00000495194	ENST00000498336		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000432371		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000422140		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000461523		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000454399		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000442290		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000469088		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000449754		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000436805		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000489106		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000383592		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000418065		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000484225		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000427729		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000444972		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000481092		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000453232		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000422639		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
intron-intron	ENST00000495194	ENST00000498679		TCGA	RV	PAAD	TCGA-IB-7652-01A	ABCF1	chr6	30539337	+	PRR3	chr6	30529611	+
5UTR-5UTR	ENST00000256682	ENST00000301061		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000256682	ENST00000407467		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000256682	ENST00000403957		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000447318	ENST00000301061		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000447318	ENST00000407467		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000447318	ENST00000403957		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000541959	ENST00000301061		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000541959	ENST00000407467		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5UTR-5UTR	ENST00000541959	ENST00000403957		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
intron-5UTR	ENST00000541967	ENST00000301061		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
intron-5UTR	ENST00000541967	ENST00000407467		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
intron-5UTR	ENST00000541967	ENST00000403957		TCGA	RV	PAAD	TCGA-HV-A5A5-01A	ARF3	chr12	49351093	-	WNT10B	chr12	49364352	-
5CDS-intron	ENST00000307078	ENST00000435344		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-intron	ENST00000307078	ENST00000477737		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-intron	ENST00000307078	ENST00000451075		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-3UTR	ENST00000307078	ENST00000490947		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-intron	ENST00000375702	ENST00000435344		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-intron	ENST00000375702	ENST00000477737		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-intron	ENST00000375702	ENST00000451075		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5CDS-3UTR	ENST00000375702	ENST00000490947		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	AXIN2	chr17	63553924	-	VWA3B	chr2	98872587	+
5UTR-3CDS	ENST00000541284	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000541284	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000541284	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000451834	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000451834	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000423368	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000423368	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000361528	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000361528	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000356162	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000356162	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000428680	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000428680	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-3CDS	ENST00000315544	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5UTR-intron	ENST00000315544	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000473470	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-intron	ENST00000473470	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000417172		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000361388		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000422748		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000361675		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000361901		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000393118		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000495522		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000424922		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-3CDS	ENST00000414802	ENST00000543443		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
intron-intron	ENST00000414802	ENST00000466704		TCGA	RV	PAAD	TCGA-HZ-A9TJ-06A	CNOT4	chr7	135194637	-	CALD1	chr7	134613505	+
5CDS-3UTR	ENST00000255631	ENST00000595830		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000255631	ENST00000396147		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-5UTR	ENST00000255631	ENST00000599086		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000255631	ENST00000425570		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000255631	ENST00000600989		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-intron	ENST00000255631	ENST00000599852		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000433386	ENST00000595830		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000433386	ENST00000396147		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-5UTR	ENST00000433386	ENST00000599086		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000433386	ENST00000425570		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000433386	ENST00000600989		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-intron	ENST00000433386	ENST00000599852		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000376343	ENST00000595830		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000376343	ENST00000396147		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-5UTR	ENST00000376343	ENST00000599086		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000376343	ENST00000425570		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000376343	ENST00000600989		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-intron	ENST00000376343	ENST00000599852		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000587922	ENST00000595830		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000587922	ENST00000396147		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-5UTR	ENST00000587922	ENST00000599086		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000587922	ENST00000425570		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-3UTR	ENST00000587922	ENST00000600989		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
5CDS-intron	ENST00000587922	ENST00000599852		TCGA	RV	PAAD	TCGA-2J-AABP-01A	HSPBP1	chr19	55789010	-	ZNF418	chr19	58433997	-
Frame-shit	ENST00000160262	ENST00000264818		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000160262	ENST00000524462		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000160262	ENST00000525621		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000160262	ENST00000529370		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
5CDS-intron	ENST00000160262	ENST00000529422		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000589261	ENST00000264818		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000589261	ENST00000524462		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000589261	ENST00000525621		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
Frame-shit	ENST00000589261	ENST00000529370		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
5CDS-intron	ENST00000589261	ENST00000529422		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ICAM3	chr19	10445204	-	TYK2	chr19	10468814	-
5CDS-intron	ENST00000412327	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000412327	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000412327	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000335025	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000335025	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000335025	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000492445	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000492445	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000492445	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000398831	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000398831	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000398831	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000406385	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000406385	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000406385	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000456792	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000456792	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
5CDS-intron	ENST00000456792	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
intron-intron	ENST00000446951	ENST00000332710		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
intron-intron	ENST00000446951	ENST00000329705		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
intron-intron	ENST00000446951	ENST00000359500		TCGA	RV	PAAD	TCGA-IB-7647-01A	PPIL2	chr22	22029404	+	TBX1	chr22	19766743	+
Frame-shit	ENST00000255559	ENST00000392650		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000255559	ENST00000388726		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
5CDS-5UTR	ENST00000255559	ENST00000410094		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000542342	ENST00000392650		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000542342	ENST00000388726		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
5CDS-5UTR	ENST00000542342	ENST00000410094		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
intron-3CDS	ENST00000579988	ENST00000392650		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
intron-3CDS	ENST00000579988	ENST00000388726		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
intron-5UTR	ENST00000579988	ENST00000410094		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000579732	ENST00000392650		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
Frame-shit	ENST00000579732	ENST00000388726		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
5CDS-5UTR	ENST00000579732	ENST00000410094		TCGA	RV	PAAD	TCGA-F2-6879-01A	SLC39A11	chr17	71080947	-	SDK2	chr17	71364732	-
intron-3CDS	ENST00000601154	ENST00000252485		TCGA	RV	PAAD	TCGA-3A-A9IU-01A	CCDC9	chr19	47764096	+	PVRL2	chr19	45368528	+
intron-3CDS	ENST00000601154	ENST00000252483		TCGA	RV	PAAD	TCGA-3A-A9IU-01A	CCDC9	chr19	47764096	+	PVRL2	chr19	45368528	+
Frame-shit	ENST00000221922	ENST00000252485		TCGA	RV	PAAD	TCGA-3A-A9IU-01A	CCDC9	chr19	47764096	+	PVRL2	chr19	45368528	+
Frame-shit	ENST00000221922	ENST00000252483		TCGA	RV	PAAD	TCGA-3A-A9IU-01A	CCDC9	chr19	47764096	+	PVRL2	chr19	45368528	+
5UTR-3CDS	ENST00000360540	ENST00000260102		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	PCMTD1	chr8	52811490	-	MRPL15	chr8	55049071	+
In-frame	ENST00000544451	ENST00000260102		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	PCMTD1	chr8	52811490	-	MRPL15	chr8	55049071	+
5UTR-3CDS	ENST00000519559	ENST00000260102		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	PCMTD1	chr8	52811490	-	MRPL15	chr8	55049071	+
5UTR-3CDS	ENST00000522514	ENST00000260102		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	PCMTD1	chr8	52811490	-	MRPL15	chr8	55049071	+
5UTR-3CDS	ENST00000521344	ENST00000260102		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	PCMTD1	chr8	52811490	-	MRPL15	chr8	55049071	+
Frame-shit	ENST00000340811	ENST00000081029		TCGA	RV	PAAD	TCGA-IB-A6UF-01A	PKP2	chr12	32949043	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000340811	ENST00000538315		TCGA	RV	PAAD	TCGA-IB-A6UF-01A	PKP2	chr12	32949043	-	MRPS35	chr12	27888380	+
Frame-shit	ENST00000070846	ENST00000081029		TCGA	RV	PAAD	TCGA-IB-A6UF-01A	PKP2	chr12	32949043	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000070846	ENST00000538315		TCGA	RV	PAAD	TCGA-IB-A6UF-01A	PKP2	chr12	32949043	-	MRPS35	chr12	27888380	+
intron-3CDS	ENST00000546741	ENST00000081029		TCGA	RV	PAAD	TCGA-IB-A6UF-01A	PKP2	chr12	32949043	-	MRPS35	chr12	27888380	+
intron-intron	ENST00000546741	ENST00000538315		TCGA	RV	PAAD	TCGA-IB-A6UF-01A	PKP2	chr12	32949043	-	MRPS35	chr12	27888380	+
In-frame	ENST00000531287	ENST00000324225		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000531287	ENST00000431081		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000531287	ENST00000530948		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000531287	ENST00000532062		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000531452	ENST00000324225		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000531452	ENST00000431081		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000531452	ENST00000530948		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000531452	ENST00000532062		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000530849	ENST00000324225		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000530849	ENST00000431081		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000530849	ENST00000530948		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000530849	ENST00000532062		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000300650	ENST00000324225		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
In-frame	ENST00000300650	ENST00000431081		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000300650	ENST00000530948		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5CDS-intron	ENST00000300650	ENST00000532062		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
intron-3CDS	ENST00000524917	ENST00000324225		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
intron-3CDS	ENST00000524917	ENST00000431081		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
intron-intron	ENST00000524917	ENST00000530948		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
intron-intron	ENST00000524917	ENST00000532062		TCGA	RV	PAAD	TCGA-IB-7654-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117060882	+
5UTR-3CDS	ENST00000373824	ENST00000378785		TCGA	RV	PAAD	TCGA-Q3-AA2A-01A	TAF12	chr1	28969504	-	ATAD3C	chr1	1403764	+
intron-3CDS	ENST00000263974	ENST00000378785		TCGA	RV	PAAD	TCGA-Q3-AA2A-01A	TAF12	chr1	28969504	-	ATAD3C	chr1	1403764	+
intron-3CDS	ENST00000471683	ENST00000378785		TCGA	RV	PAAD	TCGA-Q3-AA2A-01A	TAF12	chr1	28969504	-	ATAD3C	chr1	1403764	+
In-frame	ENST00000333781	ENST00000398907		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
In-frame	ENST00000333781	ENST00000398905		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
In-frame	ENST00000333781	ENST00000288319		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000398897		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000398911		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000398910		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000417133		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000442448		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000453032		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000398919		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000429727		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000333781	ENST00000485493		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
In-frame	ENST00000541890	ENST00000398907		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
In-frame	ENST00000541890	ENST00000398905		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
In-frame	ENST00000541890	ENST00000288319		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000398897		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000398911		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000398910		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000417133		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000442448		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000453032		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000398919		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000429727		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5CDS-intron	ENST00000541890	ENST00000485493		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000398753	ENST00000398907		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000398753	ENST00000398905		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000398753	ENST00000288319		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000398897		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000398911		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000398910		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000417133		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000442448		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000453032		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000398919		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000429727		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
5UTR-intron	ENST00000398753	ENST00000485493		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000380708	ENST00000398907		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000380708	ENST00000398905		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000380708	ENST00000288319		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000398897		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000398911		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000398910		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000417133		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000442448		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000453032		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000398919		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000429727		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000380708	ENST00000485493		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000466787	ENST00000398907		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000466787	ENST00000398905		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-3CDS	ENST00000466787	ENST00000288319		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000398897		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000398911		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000398910		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000417133		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000442448		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000453032		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000398919		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000429727		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
intron-intron	ENST00000466787	ENST00000485493		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	WRB	chr21	40752412	+	ERG	chr21	39817544	-
In-frame	ENST00000318522	ENST00000394480		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000557856		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000357724		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000355254		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000360948		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000542733		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000558676		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000318522	ENST00000317501		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000318522	ENST00000558306		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000318522	ENST00000540489		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000394480		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000557856		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000357724		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000355254		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000360948		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000542733		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000558676		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000402711	ENST00000317501		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000402711	ENST00000558306		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000402711	ENST00000540489		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000394480		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000557856		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000357724		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000355254		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000360948		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000542733		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000558676		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000482660	ENST00000317501		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000482660	ENST00000558306		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000482660	ENST00000540489		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000394480		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000557856		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000357724		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000355254		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000360948		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000542733		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000558676		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
In-frame	ENST00000401738	ENST00000317501		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000401738	ENST00000558306		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000401738	ENST00000540489		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000394480		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000557856		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000357724		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000355254		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000360948		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000542733		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000558676		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000453191	ENST00000317501		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000453191	ENST00000558306		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000453191	ENST00000540489		TCGA	RV	PAAD	TCGA-FB-AAPP-01A	EML4	chr2	42491871	+	NTRK3	chr15	88576276	-
5CDS-intron	ENST00000304636	ENST00000267101		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000304636	ENST00000450146		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000304636	ENST00000415288		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000304636	ENST00000553131		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000304636	ENST00000411731		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000304636	ENST00000549832		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000317840	ENST00000267101		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000317840	ENST00000450146		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000317840	ENST00000415288		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000317840	ENST00000553131		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000317840	ENST00000411731		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000317840	ENST00000549832		TCGA	RV	PAAD	TCGA-IB-7654-01A	COL3A1	chr2	189877472	+	ERBB3	chr12	56492035	+
Frame-shit	ENST00000330233	ENST00000308724		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000330233	ENST00000397120		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000330233	ENST00000556277		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
3UTR-3CDS	ENST00000409393	ENST00000308724		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000409393	ENST00000397120		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000409393	ENST00000556277		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
Frame-shit	ENST00000392531	ENST00000308724		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000392531	ENST00000397120		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000392531	ENST00000556277		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
3UTR-3CDS	ENST00000551180	ENST00000308724		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000551180	ENST00000397120		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
3UTR-intron	ENST00000551180	ENST00000556277		TCGA	RV	PAAD	TCGA-YB-A89D-01A	CRIP1	chr14	105955128	+	AP1G2	chr14	24037279	-
In-frame	ENST00000584601	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000584601	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000406381	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000541774	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000445658	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000540147	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584450	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000269571	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000578199	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000540042	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000580825		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000254079		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000579000		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000394265		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
intron-3CDS	ENST00000584888	ENST00000394267		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	ERBB2	chr17	37883800	+	PPP1R1B	chr17	37791860	+
In-frame	ENST00000398540	ENST00000196371		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
In-frame	ENST00000398540	ENST00000509987		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
5CDS-intron	ENST00000398540	ENST00000512084		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
5CDS-intron	ENST00000398540	ENST00000510634		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
5CDS-intron	ENST00000398540	ENST00000513081		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
Frame-shit	ENST00000542259	ENST00000196371		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
Frame-shit	ENST00000542259	ENST00000509987		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
5CDS-intron	ENST00000542259	ENST00000512084		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
5CDS-intron	ENST00000542259	ENST00000510634		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
5CDS-intron	ENST00000542259	ENST00000513081		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-3CDS	ENST00000497757	ENST00000196371		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-3CDS	ENST00000497757	ENST00000509987		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-intron	ENST00000497757	ENST00000512084		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-intron	ENST00000497757	ENST00000510634		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-intron	ENST00000497757	ENST00000513081		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-3CDS	ENST00000478263	ENST00000196371		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-3CDS	ENST00000478263	ENST00000509987		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-intron	ENST00000478263	ENST00000512084		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-intron	ENST00000478263	ENST00000510634		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
intron-intron	ENST00000478263	ENST00000513081		TCGA	RV	PAAD	TCGA-HZ-8636-01A	FRMD4B	chr3	69267473	-	OXCT1	chr5	41801172	-
In-frame	ENST00000603302	ENST00000574091		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000603302	ENST00000219593		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000603302	ENST00000574002		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000403312	ENST00000574091		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000403312	ENST00000219593		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000403312	ENST00000574002		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000309522	ENST00000574091		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000309522	ENST00000219593		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
In-frame	ENST00000309522	ENST00000574002		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
5UTR-3CDS	ENST00000505878	ENST00000574091		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
5UTR-3CDS	ENST00000505878	ENST00000219593		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
5UTR-3CDS	ENST00000505878	ENST00000574002		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
intron-3CDS	ENST00000454409	ENST00000574091		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
intron-3CDS	ENST00000454409	ENST00000219593		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
intron-3CDS	ENST00000454409	ENST00000574002		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
intron-3CDS	ENST00000510728	ENST00000574091		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
intron-3CDS	ENST00000510728	ENST00000219593		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
intron-3CDS	ENST00000510728	ENST00000574002		TCGA	RV	PAAD	TCGA-HZ-7925-01A	HADH	chr4	108911220	+	ZP2	chr16	21214572	-
5CDS-5UTR	ENST00000358252	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-A44H-01A	TNKS1BP1	chr11	57085292	-	PRSS1	chr7	142457330	+
5CDS-5UTR	ENST00000358252	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-A44H-01A	TNKS1BP1	chr11	57085292	-	PRSS1	chr7	142457330	+
5CDS-5UTR	ENST00000532437	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-A44H-01A	TNKS1BP1	chr11	57085292	-	PRSS1	chr7	142457330	+
5CDS-5UTR	ENST00000532437	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-A44H-01A	TNKS1BP1	chr11	57085292	-	PRSS1	chr7	142457330	+
intron-5UTR	ENST00000530920	ENST00000486171		TCGA	RV	PAAD	TCGA-F2-A44H-01A	TNKS1BP1	chr11	57085292	-	PRSS1	chr7	142457330	+
intron-5UTR	ENST00000530920	ENST00000311737		TCGA	RV	PAAD	TCGA-F2-A44H-01A	TNKS1BP1	chr11	57085292	-	PRSS1	chr7	142457330	+
In-frame	ENST00000299413	ENST00000227520		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TRIM44	chr11	35706884	+	CCDC86	chr11	60617413	+
In-frame	ENST00000299413	ENST00000545580		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TRIM44	chr11	35706884	+	CCDC86	chr11	60617413	+
intron-3CDS	ENST00000532066	ENST00000227520		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TRIM44	chr11	35706884	+	CCDC86	chr11	60617413	+
intron-3CDS	ENST00000532066	ENST00000545580		TCGA	RV	PAAD	TCGA-2J-AABP-01A	TRIM44	chr11	35706884	+	CCDC86	chr11	60617413	+
Frame-shit	ENST00000256343	ENST00000545170		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
Frame-shit	ENST00000256343	ENST00000429774		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
Frame-shit	ENST00000256343	ENST00000393287		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000256343	ENST00000502250		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000256343	ENST00000503767		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000256343	ENST00000340660		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
5CDS-intron	ENST00000256343	ENST00000532032		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
5CDS-5UTR	ENST00000256343	ENST00000554491		TCGA	RV	PAAD	TCGA-IB-7654-01A	CATSPERB	chr14	92159470	-	ATXN3	chr14	92563182	-
5CDS-5UTR	ENST00000281708	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000281708	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000281708	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000281708	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000281708	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000281708	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000281708	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000281708	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603548	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603548	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603548	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603548	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000603548	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603548	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000603548	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603548	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604872	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604872	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604872	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604872	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000604872	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604872	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000604872	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604872	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000296555	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000296555	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000296555	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000296555	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000296555	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000296555	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000296555	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000296555	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000263981	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000263981	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000263981	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000263981	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000263981	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000263981	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000263981	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000263981	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000393956	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000393956	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000393956	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000393956	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000393956	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000393956	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000393956	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000393956	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603841	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603841	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603841	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603841	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000603841	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603841	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000603841	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000603841	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604095	ENST00000409598		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604095	ENST00000424281		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604095	ENST00000304527		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604095	ENST00000455740		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000604095	ENST00000409252		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604095	ENST00000514152		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000604095	ENST00000427414		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000604095	ENST00000604030		TCGA	RV	PAAD	TCGA-H8-A6C1-01A	FBXW7	chr4	153249360	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000520810	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000520810	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000520810	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000520810	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000520810	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000520810	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000520810	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000416505	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000519735	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000520835	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000379708	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000518983	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
5CDS-intron	ENST00000522147	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000519476		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000297720		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000524874		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000379957		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000523983		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000527710		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
intron-intron	ENST00000522785	ENST00000528827		TCGA	RV	PAAD	TCGA-HZ-A77P-01A	IKBKB	chr8	42129723	+	LETM2	chr8	38257790	+
Frame-shit	ENST00000075503	ENST00000311268		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	STYK1	chr12	10774475	-	GPR162	chr12	6934649	+
Frame-shit	ENST00000075503	ENST00000428545		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	STYK1	chr12	10774475	-	GPR162	chr12	6934649	+
5CDS-intron	ENST00000075503	ENST00000541431		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	STYK1	chr12	10774475	-	GPR162	chr12	6934649	+
5CDS-5UTR	ENST00000075503	ENST00000382315		TCGA	RV	PAAD	TCGA-3A-A9I9-01A	STYK1	chr12	10774475	-	GPR162	chr12	6934649	+
In-frame	ENST00000355528	ENST00000335255		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
5CDS-intron	ENST00000355528	ENST00000529652		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
5UTR-3CDS	ENST00000397466	ENST00000335255		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
5UTR-intron	ENST00000397466	ENST00000529652		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
In-frame	ENST00000539345	ENST00000335255		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
5CDS-intron	ENST00000539345	ENST00000529652		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
intron-3CDS	ENST00000576691	ENST00000335255		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
intron-intron	ENST00000576691	ENST00000529652		TCGA	RV	PAAD	TCGA-RB-A7B8-01A	TBCD	chr17	80714091	+	FOXK2	chr17	80544939	+
5UTR-3CDS	ENST00000464506	ENST00000361306		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13607675	+
5UTR-3CDS	ENST00000464506	ENST00000380602		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13607675	+
5UTR-intron	ENST00000464506	ENST00000473826		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13607675	+
3UTR-3CDS	ENST00000243325	ENST00000361306		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13607675	+
3UTR-3CDS	ENST00000243325	ENST00000380602		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13607675	+
3UTR-intron	ENST00000243325	ENST00000473826		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	RAB9A	chrX	13707407	+	EGFL6	chrX	13607675	+
5CDS-intron	ENST00000373479	ENST00000377791		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000373479	ENST00000602637		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000469731	ENST00000377791		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000469731	ENST00000602637		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000394443	ENST00000377791		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000394443	ENST00000602637		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
3UTR-intron	ENST00000479516	ENST00000377791		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
3UTR-3UTR	ENST00000479516	ENST00000602637		TCGA	RV	PAAD	TCGA-XN-A8T5-01A	RNF8	chr6	37328350	+	HIST1H2AC	chr6	26138282	+
intron-3CDS	ENST00000488996	ENST00000325411		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
intron-5UTR	ENST00000488996	ENST00000463318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
intron-5UTR	ENST00000488996	ENST00000350657		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
In-frame	ENST00000356387	ENST00000325411		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000356387	ENST00000463318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000356387	ENST00000350657		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
In-frame	ENST00000478730	ENST00000325411		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000478730	ENST00000463318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000478730	ENST00000350657		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
In-frame	ENST00000403646	ENST00000325411		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000403646	ENST00000463318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000403646	ENST00000350657		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
In-frame	ENST00000473939	ENST00000325411		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000473939	ENST00000463318		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
5CDS-5UTR	ENST00000473939	ENST00000350657		TCGA	RV	PAAD	TCGA-FB-AAPZ-01A	ORAI2	chr7	102079628	+	SLC47A2	chr17	19584983	-
In-frame	ENST00000549190	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000549190	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000549190	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000395580	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000395580	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000395580	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000337898	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000337898	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000337898	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000358314	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000358314	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000358314	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000395568	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000395568	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000395568	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000256678	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000256678	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000256678	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000449194	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000449194	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000449194	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000552761	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000552761	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000552761	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000317560	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000317560	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000317560	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000432191	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000432191	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
5CDS-intron	ENST00000432191	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
intron-3CDS	ENST00000550535	ENST00000229201		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
intron-3CDS	ENST00000550535	ENST00000553532		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
intron-intron	ENST00000550535	ENST00000554616		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	PPHLN1	chr12	42787491	+	TIMELESS	chr12	56818936	-
In-frame	ENST00000306357	ENST00000267484		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
In-frame	ENST00000306357	ENST00000395090		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
In-frame	ENST00000306357	ENST00000342503		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
5CDS-5UTR	ENST00000306357	ENST00000557422		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000574431	ENST00000267484		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000574431	ENST00000395090		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000574431	ENST00000342503		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
5CDS-5UTR	ENST00000574431	ENST00000557422		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
intron-3CDS	ENST00000573373	ENST00000267484		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
intron-3CDS	ENST00000573373	ENST00000395090		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
intron-3CDS	ENST00000573373	ENST00000342503		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
intron-5UTR	ENST00000573373	ENST00000557422		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	STX8	chr17	9281869	-	RTN1	chr14	60074210	-
Frame-shit	ENST00000271732	ENST00000368995		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000271732	ENST00000368993		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000271732	ENST00000322343		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000271732	ENST00000361824		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
5CDS-intron	ENST00000271732	ENST00000476530		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000540514	ENST00000368995		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000540514	ENST00000368993		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000540514	ENST00000322343		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
Frame-shit	ENST00000540514	ENST00000361824		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
5CDS-intron	ENST00000540514	ENST00000476530		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
intron-3CDS	ENST00000479757	ENST00000368995		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
intron-3CDS	ENST00000479757	ENST00000368993		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
intron-3CDS	ENST00000479757	ENST00000322343		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
intron-3CDS	ENST00000479757	ENST00000361824		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
intron-intron	ENST00000479757	ENST00000476530		TCGA	RV	PAAD	TCGA-IB-7652-01A	GOLPH3L	chr1	150667132	-	HORMAD1	chr1	150675869	-
In-frame	ENST00000345496	ENST00000398457		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000462050		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000347800		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000398449		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000361802		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000343687		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000398437		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000345496	ENST00000340588		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3CDS	ENST00000477954	ENST00000398457		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000462050		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000347800		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000398449		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000361802		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000343687		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000398437		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5UTR-3UTR	ENST00000477954	ENST00000340588		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
Frame-shit	ENST00000330942	ENST00000398457		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000462050		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000347800		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000398449		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000361802		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000343687		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000398437		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
5CDS-3UTR	ENST00000330942	ENST00000340588		TCGA	RV	PAAD	TCGA-3E-AAAY-01A	UBE2G2	chr21	46207835	-	ABCG1	chr21	43704670	+
intron-intron	ENST00000359867	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000359867	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000359867	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000359867	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000359867	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000359867	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000396832	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000396832	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000396832	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000396832	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000396832	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000396832	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
5UTR-intron	ENST00000400206	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
5UTR-intron	ENST00000400206	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
5UTR-intron	ENST00000400206	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
5UTR-intron	ENST00000400206	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
5UTR-intron	ENST00000400206	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
5UTR-intron	ENST00000400206	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000403904	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000403904	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000403904	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000403904	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000403904	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000403904	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000413574	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000413574	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000413574	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000413574	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000413574	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000413574	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000405675	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000405675	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000405675	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000405675	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000405675	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000405675	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000498529	ENST00000401702		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000498529	ENST00000397326		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000498529	ENST00000397328		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000498529	ENST00000359787		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000498529	ENST00000406324		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000498529	ENST00000472240		TCGA	RV	PAAD	TCGA-HZ-8005-01A	CSNK1E	chr22	38794443	-	MB	chr22	36033255	-
intron-intron	ENST00000289749	ENST00000300134		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
intron-intron	ENST00000289749	ENST00000538913		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
intron-intron	ENST00000289749	ENST00000543873		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
intron-intron	ENST00000289749	ENST00000556155		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
intron-intron	ENST00000289749	ENST00000537215		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
intron-intron	ENST00000289749	ENST00000454075		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000375136	ENST00000300134		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000375136	ENST00000538913		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000375136	ENST00000543873		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000375136	ENST00000556155		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000375136	ENST00000537215		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000375136	ENST00000454075		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548815	ENST00000300134		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548815	ENST00000538913		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548815	ENST00000543873		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548815	ENST00000556155		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548815	ENST00000537215		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548815	ENST00000454075		TCGA	RV	PAAD	TCGA-HZ-7924-01A	NBL1	chr1	19984945	+	STAT6	chr12	57496773	-
Frame-shit	ENST00000319481	ENST00000361524		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
Frame-shit	ENST00000319481	ENST00000584787		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
Frame-shit	ENST00000319481	ENST00000538137		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
5CDS-intron	ENST00000319481	ENST00000579111		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
In-frame	ENST00000399443	ENST00000361524		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
Frame-shit	ENST00000399443	ENST00000584787		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
In-frame	ENST00000399443	ENST00000538137		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
5CDS-intron	ENST00000399443	ENST00000579111		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
Frame-shit	ENST00000357041	ENST00000361524		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
Frame-shit	ENST00000357041	ENST00000584787		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
Frame-shit	ENST00000357041	ENST00000538137		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
5CDS-intron	ENST00000357041	ENST00000579111		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-3CDS	ENST00000399441	ENST00000361524		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-3CDS	ENST00000399441	ENST00000584787		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-3CDS	ENST00000399441	ENST00000538137		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-intron	ENST00000399441	ENST00000579111		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-3CDS	ENST00000582618	ENST00000361524		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-3CDS	ENST00000582618	ENST00000584787		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-3CDS	ENST00000582618	ENST00000538137		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
intron-intron	ENST00000582618	ENST00000579111		TCGA	RV	PAAD	TCGA-HV-AA8X-01A	OSBPL1A	chr18	21805006	-	ZNF521	chr18	22642705	-
5UTR-3CDS	ENST00000462137	ENST00000327761		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5UTR-5UTR	ENST00000462137	ENST00000395126		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5UTR-5UTR	ENST00000462137	ENST00000357043		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5UTR-5UTR	ENST00000462137	ENST00000359365		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5UTR-intron	ENST00000462137	ENST00000488024		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
In-frame	ENST00000232496	ENST00000327761		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000232496	ENST00000395126		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000232496	ENST00000357043		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5CDS-5UTR	ENST00000232496	ENST00000359365		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
5CDS-intron	ENST00000232496	ENST00000488024		TCGA	RV	PAAD	TCGA-2L-AAQI-01A	TUSC2	chr3	50365385	-	RASSF1	chr3	50369585	-
In-frame	ENST00000357248	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
5CDS-intron	ENST00000357248	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
In-frame	ENST00000349721	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
5CDS-intron	ENST00000349721	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
In-frame	ENST00000382203	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
5CDS-intron	ENST00000382203	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
In-frame	ENST00000382194	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
5CDS-intron	ENST00000382194	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-3CDS	ENST00000491574	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-intron	ENST00000491574	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-3CDS	ENST00000324954	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-intron	ENST00000324954	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-3CDS	ENST00000302401	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-intron	ENST00000302401	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-3CDS	ENST00000382186	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-intron	ENST00000382186	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-3CDS	ENST00000382185	ENST00000380033		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
intron-intron	ENST00000382185	ENST00000380030		TCGA	RV	PAAD	TCGA-3A-A9IR-01A	SMARCA2	chr9	2039900	+	BEND2	chrX	18213562	-
5CDS-3UTR	ENST00000407071	ENST00000473875		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
5CDS-3UTR	ENST00000407071	ENST00000366534		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
5CDS-3UTR	ENST00000407071	ENST00000366533		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
5CDS-3UTR	ENST00000407071	ENST00000366531		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
intron-3UTR	ENST00000366518	ENST00000473875		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
intron-3UTR	ENST00000366518	ENST00000366534		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
intron-3UTR	ENST00000366518	ENST00000366533		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
intron-3UTR	ENST00000366518	ENST00000366531		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
3UTR-3UTR	ENST00000479506	ENST00000473875		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
3UTR-3UTR	ENST00000479506	ENST00000366534		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
3UTR-3UTR	ENST00000479506	ENST00000366533		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
3UTR-3UTR	ENST00000479506	ENST00000366531		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	KIF26B	chr1	245530669	+	C1orf101	chr1	244773542	+
5CDS-intron	ENST00000585421	ENST00000257497		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000585421	ENST00000376911		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000585421	ENST00000491192		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000536189	ENST00000257497		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000536189	ENST00000376911		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000536189	ENST00000491192		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000262768	ENST00000257497		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000262768	ENST00000376911		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000262768	ENST00000491192		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000586057	ENST00000257497		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000586057	ENST00000376911		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000586057	ENST00000491192		TCGA	RV	PAAD	TCGA-IB-7885-01A	TIMP2	chr17	76849059	-	ANXA1	chr9	75772570	+
In-frame	ENST00000261349	ENST00000281171		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000261349	ENST00000348962		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000261349	ENST00000542557		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000261349	ENST00000544244		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000261349	ENST00000445537		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000261349	ENST00000442921		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
5CDS-intron	ENST00000261349	ENST00000543886		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
5CDS-intron	ENST00000261349	ENST00000544706		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000543091	ENST00000281171		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000543091	ENST00000348962		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000543091	ENST00000542557		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000543091	ENST00000544244		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000543091	ENST00000445537		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
In-frame	ENST00000543091	ENST00000442921		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
5CDS-intron	ENST00000543091	ENST00000543886		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
5CDS-intron	ENST00000543091	ENST00000544706		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-3CDS	ENST00000540415	ENST00000281171		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-3CDS	ENST00000540415	ENST00000348962		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-3CDS	ENST00000540415	ENST00000542557		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-3CDS	ENST00000540415	ENST00000544244		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-3CDS	ENST00000540415	ENST00000445537		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-3CDS	ENST00000540415	ENST00000442921		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-intron	ENST00000540415	ENST00000543886		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
intron-intron	ENST00000540415	ENST00000544706		TCGA	RV	PAAD	TCGA-F2-6879-01A	LRP6	chr12	12332744	-	PTPRO	chr12	15733631	+
5CDS-5UTR	ENST00000580900	ENST00000381196		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000360074		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000537002		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000397617		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000358503		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000397611		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000355233		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000356435		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000540109		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000486161		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000397606		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-5UTR	ENST00000580900	ENST00000463477		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000580900	ENST00000471274		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-5UTR	ENST00000380172	ENST00000381196		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000360074		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000537002		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000397617		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000358503		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000397611		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000355233		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000356435		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000540109		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000486161		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000397606		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-5UTR	ENST00000380172	ENST00000463477		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000380172	ENST00000471274		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-5UTR	ENST00000460874	ENST00000381196		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000360074		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000537002		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000397617		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000358503		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000397611		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000355233		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000356435		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000540109		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000486161		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000397606		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-5UTR	ENST00000460874	ENST00000463477		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
5CDS-intron	ENST00000460874	ENST00000471274		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-5UTR	ENST00000427788	ENST00000381196		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000360074		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000537002		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000397617		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000358503		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000397611		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000355233		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000356435		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000540109		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000486161		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000397606		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-5UTR	ENST00000427788	ENST00000463477		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
intron-intron	ENST00000427788	ENST00000471274		TCGA	RV	PAAD	TCGA-US-A779-01A	MTAP	chr9	21838009	+	PTPRD	chr9	9766851	-
In-frame	ENST00000262646	ENST00000220876		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
In-frame	ENST00000262646	ENST00000518111		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000262646	ENST00000518491		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
In-frame	ENST00000531289	ENST00000220876		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
In-frame	ENST00000531289	ENST00000518111		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000531289	ENST00000518491		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
In-frame	ENST00000529579	ENST00000220876		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
In-frame	ENST00000529579	ENST00000518111		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000529579	ENST00000518491		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000530071	ENST00000220876		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000530071	ENST00000518111		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
intron-5UTR	ENST00000530071	ENST00000518491		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	RAB2A	chr8	61429812	+	STMN2	chr8	80549037	+
In-frame	ENST00000490882	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000490882	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000490882	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000490882	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000490882	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000490882	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000490882	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000490882	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000490882	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000490882	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000429972	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000429972	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000429972	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000429972	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000429972	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000429972	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000429972	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000429972	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000429972	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000429972	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000295956	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000295956	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000295956	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000295956	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000295956	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000295956	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000295956	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000295956	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000295956	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000295956	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000358537	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000358537	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000358537	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000358537	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000358537	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000358537	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000358537	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000358537	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000358537	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000358537	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000357272	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000357272	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000357272	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000357272	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000357272	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000357272	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000357272	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000357272	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000357272	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000357272	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000348383	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000348383	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000348383	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000348383	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000348383	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000348383	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000348383	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000348383	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000348383	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000348383	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000493452	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000493452	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000493452	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000493452	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000493452	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000493452	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000493452	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000493452	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000493452	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000493452	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000419752	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000419752	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000419752	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000419752	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000419752	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-5UTR	ENST00000419752	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000419752	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000419752	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000419752	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
5CDS-intron	ENST00000419752	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-3CDS	ENST00000484981	ENST00000295951		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-5UTR	ENST00000484981	ENST00000416870		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-5UTR	ENST00000484981	ENST00000295952		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-5UTR	ENST00000484981	ENST00000383718		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-5UTR	ENST00000484981	ENST00000428312		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-5UTR	ENST00000484981	ENST00000449503		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-intron	ENST00000484981	ENST00000472546		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-intron	ENST00000484981	ENST00000442599		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-intron	ENST00000484981	ENST00000495364		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
intron-intron	ENST00000484981	ENST00000494088		TCGA	RV	PAAD	TCGA-LB-A7SX-01A	FLNB	chr3	58095897	+	SLMAP	chr3	57843460	+
In-frame	ENST00000377022	ENST00000263980		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5CDS-intron	ENST00000377022	ENST00000490329		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5CDS-intron	ENST00000377022	ENST00000545949		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5CDS-intron	ENST00000377022	ENST00000374086		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
In-frame	ENST00000344008	ENST00000263980		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5CDS-intron	ENST00000344008	ENST00000490329		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5CDS-intron	ENST00000344008	ENST00000545949		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5CDS-intron	ENST00000344008	ENST00000374086		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5UTR-3CDS	ENST00000478728	ENST00000263980		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5UTR-intron	ENST00000478728	ENST00000490329		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5UTR-intron	ENST00000478728	ENST00000545949		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
5UTR-intron	ENST00000478728	ENST00000374086		TCGA	RV	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27440777	-
intron-3CDS	ENST00000419277	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000419277	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000419277	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000419277	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000419277	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000419277	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
In-frame	ENST00000428995	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000428995	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000428995	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000428995	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000428995	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000428995	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000463066	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000463066	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000463066	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000463066	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000463066	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000463066	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000443117	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000443117	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000443117	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000443117	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000443117	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000443117	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000551196	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551196	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551196	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551196	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551196	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551196	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000480521	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000480521	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000480521	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000480521	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000480521	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000480521	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000415247	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000415247	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000415247	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000415247	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000415247	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000415247	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000484255	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000484255	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000484255	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000484255	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000484255	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000484255	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000454805	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000454805	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000454805	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000454805	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000454805	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000454805	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000549300	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549300	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549300	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549300	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549300	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549300	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000475500	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000475500	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000475500	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000475500	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000475500	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000475500	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000374808	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000374808	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000374808	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000374808	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000374808	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000374808	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000552158	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000552158	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000552158	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000552158	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000552158	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000552158	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000488565	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000488565	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000488565	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000488565	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000488565	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000488565	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000383224	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000383224	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000383224	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000383224	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000383224	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000383224	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000551933	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551933	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551933	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551933	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551933	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000551933	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000474244	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000474244	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000474244	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000474244	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000474244	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000474244	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000422504	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000422504	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000422504	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000422504	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000422504	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000422504	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000550806	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550806	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550806	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550806	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550806	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550806	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000494775	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000494775	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000494775	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000494775	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000494775	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000494775	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000515317	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000515317	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000515317	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000515317	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000515317	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000515317	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000550456	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550456	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550456	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550456	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550456	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000550456	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000502285	ENST00000376929		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000502285	ENST00000506690		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000502285	ENST00000389805		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000502285	ENST00000402874		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000502285	ENST00000510187		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000502285	ENST00000360718		TCGA	RV	PAAD	TCGA-IB-7654-01A	HLA-DPA1	chr6	33032794	-	SQSTM1	chr5	179250858	+
5CDS-3UTR	ENST00000262124	ENST00000588752		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-5UTR	ENST00000262124	ENST00000589238		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-5UTR	ENST00000262124	ENST00000269159		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-intron	ENST00000262124	ENST00000588927		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-3UTR	ENST00000399892	ENST00000588752		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-5UTR	ENST00000399892	ENST00000589238		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-5UTR	ENST00000399892	ENST00000269159		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5CDS-intron	ENST00000399892	ENST00000588927		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
intron-3UTR	ENST00000592582	ENST00000588752		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
intron-5UTR	ENST00000592582	ENST00000589238		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
intron-5UTR	ENST00000592582	ENST00000269159		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
intron-intron	ENST00000592582	ENST00000588927		TCGA	RV	PAAD	TCGA-IB-A7M4-01A	SEH1L	chr18	12951904	+	IMPA2	chr18	11999053	+
5UTR-3CDS	ENST00000599470	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000599470	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599470	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599470	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599470	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599470	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599470	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599470	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000321944	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000321944	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000321944	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000321944	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000321944	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000321944	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000321944	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000321944	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000358301	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000358301	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000358301	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000358301	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000358301	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000358301	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000358301	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000358301	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-3CDS	ENST00000597766	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-3CDS	ENST00000597766	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-intron	ENST00000597766	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-intron	ENST00000597766	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-intron	ENST00000597766	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-intron	ENST00000597766	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-intron	ENST00000597766	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
3UTR-intron	ENST00000597766	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000593690	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000593690	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000593690	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000593690	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000593690	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000593690	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000593690	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000593690	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000599386	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-3CDS	ENST00000599386	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599386	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599386	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599386	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599386	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599386	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
5UTR-intron	ENST00000599386	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-3CDS	ENST00000435673	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-3CDS	ENST00000435673	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000435673	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000435673	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000435673	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000435673	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000435673	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000435673	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-3CDS	ENST00000360442	ENST00000575403		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-3CDS	ENST00000360442	ENST00000477478		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000360442	ENST00000468679		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000360442	ENST00000461069		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000360442	ENST00000395615		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000360442	ENST00000261499		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000360442	ENST00000395616		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
intron-intron	ENST00000360442	ENST00000268841		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	PAK4	chr19	39616559	+	B9D1	chr17	19251193	-
In-frame	ENST00000599117	ENST00000598913		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000599117	ENST00000314471		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000599117	ENST00000594204		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000599117	ENST00000596368		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000432763	ENST00000598913		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000432763	ENST00000314471		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000432763	ENST00000594204		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000432763	ENST00000596368		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000402194	ENST00000598913		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000402194	ENST00000314471		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000402194	ENST00000594204		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000402194	ENST00000596368		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000359191	ENST00000598913		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000359191	ENST00000314471		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000359191	ENST00000594204		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000359191	ENST00000596368		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000598725	ENST00000598913		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000598725	ENST00000314471		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000598725	ENST00000594204		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
5CDS-intron	ENST00000598725	ENST00000596368		TCGA	RV	PAAD	TCGA-IB-A7LX-01A	SUPT5H	chr19	39950600	+	SAMD4B	chr19	39871630	+
In-frame	ENST00000449910	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000449910	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000449910	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000449910	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000449910	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368412	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368412	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368412	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000368412	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000368412	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000359280	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000359280	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000359280	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000359280	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000359280	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000356955	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000356955	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000356955	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000356955	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000356955	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000355956	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000355956	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000355956	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000355956	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000355956	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000360674	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000360674	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000360674	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000360674	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000360674	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368410	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368410	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368410	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000368410	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000368410	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000271836	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000271836	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000271836	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000271836	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000271836	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368413	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368413	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000368413	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000368413	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000368413	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000531455	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000531455	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
In-frame	ENST00000531455	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000531455	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-3UTR	ENST00000531455	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
intron-3CDS	ENST00000447332	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
intron-3CDS	ENST00000447332	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
intron-3CDS	ENST00000447332	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
intron-3UTR	ENST00000447332	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
intron-3UTR	ENST00000447332	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
3UTR-3CDS	ENST00000472434	ENST00000431239		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
3UTR-3CDS	ENST00000472434	ENST00000369259		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
3UTR-3CDS	ENST00000472434	ENST00000369258		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
3UTR-3UTR	ENST00000472434	ENST00000467213		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
3UTR-3UTR	ENST00000472434	ENST00000361293		TCGA	RV	PAAD	TCGA-2J-AABK-01A	ADAM15	chr1	155032450	+	CHD1L	chr1	146739085	+
5CDS-intron	ENST00000361566	ENST00000233057		TCGA	RV	PAAD	TCGA-IB-7885-01A	KRT19	chr17	39679869	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000361566	ENST00000395127		TCGA	RV	PAAD	TCGA-IB-7885-01A	KRT19	chr17	39679869	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000361566	ENST00000405334		TCGA	RV	PAAD	TCGA-IB-7885-01A	KRT19	chr17	39679869	-	EIF2AK2	chr2	37342384	-
In-frame	ENST00000338458	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
Frame-shit	ENST00000338458	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
Frame-shit	ENST00000338458	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5CDS-intron	ENST00000338458	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
In-frame	ENST00000496106	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
Frame-shit	ENST00000496106	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
Frame-shit	ENST00000496106	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5CDS-intron	ENST00000496106	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5UTR-3CDS	ENST00000498517	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5UTR-3CDS	ENST00000498517	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5UTR-3CDS	ENST00000498517	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5UTR-intron	ENST00000498517	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000296315	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000296315	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000296315	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-intron	ENST00000296315	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000413728	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000413728	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000413728	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-intron	ENST00000413728	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000497267	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000497267	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000497267	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-intron	ENST00000497267	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000495373	ENST00000303436		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000495373	ENST00000496292		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-3CDS	ENST00000495373	ENST00000489843		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
intron-intron	ENST00000495373	ENST00000493378		TCGA	RV	PAAD	TCGA-HZ-8637-01A	ARHGEF3	chr3	56916320	-	ARF4	chr3	57558025	-
5CDS-intron	ENST00000304636	ENST00000300134		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000304636	ENST00000538913		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000304636	ENST00000543873		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000304636	ENST00000556155		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000304636	ENST00000537215		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000304636	ENST00000454075		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000317840	ENST00000300134		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000317840	ENST00000538913		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000317840	ENST00000543873		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000317840	ENST00000556155		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000317840	ENST00000537215		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000317840	ENST00000454075		TCGA	RV	PAAD	TCGA-2L-AAQA-01A	COL3A1	chr2	189877472	+	STAT6	chr12	57496773	-
5CDS-5UTR	ENST00000379141	ENST00000548446		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000420353		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000415113		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000456903		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000548118		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000591397		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000328463		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000379141	ENST00000546661		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000548446		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000420353		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000415113		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000456903		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000548118		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000591397		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000328463		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000320743	ENST00000546661		TCGA	RV	PAAD	TCGA-HZ-A49I-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000304636	ENST00000367545		TCGA	RV	PAAD	TCGA-IB-7651-01A	COL3A1	chr2	189877472	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000304636	ENST00000367526		TCGA	RV	PAAD	TCGA-IB-7651-01A	COL3A1	chr2	189877472	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000304636	ENST00000480333		TCGA	RV	PAAD	TCGA-IB-7651-01A	COL3A1	chr2	189877472	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000317840	ENST00000367545		TCGA	RV	PAAD	TCGA-IB-7651-01A	COL3A1	chr2	189877472	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000317840	ENST00000367526		TCGA	RV	PAAD	TCGA-IB-7651-01A	COL3A1	chr2	189877472	+	UTRN	chr6	144665237	+
5CDS-intron	ENST00000317840	ENST00000480333		TCGA	RV	PAAD	TCGA-IB-7651-01A	COL3A1	chr2	189877472	+	UTRN	chr6	144665237	+
Frame-shit	ENST00000011292	ENST00000525364		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
Frame-shit	ENST00000011292	ENST00000270176		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
Frame-shit	ENST00000011292	ENST00000420247		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
Frame-shit	ENST00000011292	ENST00000533862		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
Frame-shit	ENST00000011292	ENST00000279270		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
Frame-shit	ENST00000011292	ENST00000524944		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
5CDS-5UTR	ENST00000011292	ENST00000527009		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
5CDS-intron	ENST00000011292	ENST00000534462		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-3CDS	ENST00000484324	ENST00000525364		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-3CDS	ENST00000484324	ENST00000270176		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-3CDS	ENST00000484324	ENST00000420247		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-3CDS	ENST00000484324	ENST00000533862		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-3CDS	ENST00000484324	ENST00000279270		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-3CDS	ENST00000484324	ENST00000524944		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-5UTR	ENST00000484324	ENST00000527009		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
3UTR-intron	ENST00000484324	ENST00000534462		TCGA	RV	PAAD	TCGA-HZ-8003-01A	CPA1	chr7	130027929	+	SCYL1	chr11	65293392	+
In-frame	ENST00000367816	ENST00000519301		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000520407		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000523079		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000338921		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000356819		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000287845		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000341377		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000287842		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000521670		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367816	ENST00000405005		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367816	ENST00000520502		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367816	ENST00000539990		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367816	ENST00000523681		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000519301		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000520407		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000523079		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000338921		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000356819		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000287845		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000341377		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000287842		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000521670		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367815	ENST00000405005		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367815	ENST00000520502		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367815	ENST00000539990		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367815	ENST00000523681		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000519301		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000520407		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000523079		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000338921		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000356819		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000287845		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000341377		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000287842		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000521670		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000499679	ENST00000405005		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000499679	ENST00000520502		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000499679	ENST00000539990		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000499679	ENST00000523681		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000519301		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000520407		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000523079		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000338921		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000356819		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000287845		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000341377		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000287842		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000521670		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
In-frame	ENST00000367813	ENST00000405005		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367813	ENST00000520502		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367813	ENST00000539990		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
5CDS-intron	ENST00000367813	ENST00000523681		TCGA	RV	PAAD	TCGA-3A-A9I5-01A	ATP1B1	chr1	169080736	+	NRG1	chr8	32453346	+
3UTR-intron	ENST00000331595	ENST00000513761		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000347613		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000360642		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000504131		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
3UTR-intron	ENST00000331595	ENST00000506924		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000513761		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000347613		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000360642		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000504131		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000480756	ENST00000506924		TCGA	RV	PAAD	TCGA-IB-7654-01A	BGN	chrX	152775004	+	CLCN3	chr4	170623929	+
5UTR-intron	ENST00000360957	ENST00000601154		TCGA	RV	PAAD	TCGA-HZ-8315-01A	PPP1R13L	chr19	45908257	-	CCDC9	chr19	47769868	+
5UTR-intron	ENST00000360957	ENST00000221922		TCGA	RV	PAAD	TCGA-HZ-8315-01A	PPP1R13L	chr19	45908257	-	CCDC9	chr19	47769868	+
intron-intron	ENST00000418234	ENST00000601154		TCGA	RV	PAAD	TCGA-HZ-8315-01A	PPP1R13L	chr19	45908257	-	CCDC9	chr19	47769868	+
intron-intron	ENST00000418234	ENST00000221922		TCGA	RV	PAAD	TCGA-HZ-8315-01A	PPP1R13L	chr19	45908257	-	CCDC9	chr19	47769868	+
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	PAAD	TCGA-S4-A8RP-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000492698	ENST00000279101		TCGA	RV	PAAD	TCGA-IB-7644-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60971648	-
In-frame	ENST00000252999	ENST00000279101		TCGA	RV	PAAD	TCGA-IB-7644-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60971648	-
In-frame	ENST00000370692	ENST00000279101		TCGA	RV	PAAD	TCGA-IB-7644-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60971648	-
In-frame	ENST00000370677	ENST00000279101		TCGA	RV	PAAD	TCGA-IB-7644-01A	LAMA5	chr20	60926760	-	CABLES2	chr20	60971648	-
In-frame	ENST00000290219	ENST00000355451		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	IFNGR2	chr21	34805178	+	NUDCD3	chr7	44444182	-
5CDS-5UTR	ENST00000290219	ENST00000460110		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	IFNGR2	chr21	34805178	+	NUDCD3	chr7	44444182	-
In-frame	ENST00000381995	ENST00000355451		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	IFNGR2	chr21	34805178	+	NUDCD3	chr7	44444182	-
5CDS-5UTR	ENST00000381995	ENST00000460110		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	IFNGR2	chr21	34805178	+	NUDCD3	chr7	44444182	-
In-frame	ENST00000405436	ENST00000355451		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	IFNGR2	chr21	34805178	+	NUDCD3	chr7	44444182	-
5CDS-5UTR	ENST00000405436	ENST00000460110		TCGA	RV	PAAD	TCGA-L1-A7W4-01A	IFNGR2	chr21	34805178	+	NUDCD3	chr7	44444182	-
In-frame	ENST00000381669	ENST00000332509		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
In-frame	ENST00000381669	ENST00000335539		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
In-frame	ENST00000381669	ENST00000402064		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000381669	ENST00000490473		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000381669	ENST00000436218		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000381669	ENST00000447598		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000381669	ENST00000435484		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000381669	ENST00000417303		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
In-frame	ENST00000332536	ENST00000332509		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
In-frame	ENST00000332536	ENST00000335539		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
In-frame	ENST00000332536	ENST00000402064		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000332536	ENST00000490473		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000332536	ENST00000436218		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000332536	ENST00000447598		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000332536	ENST00000435484		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000332536	ENST00000417303		TCGA	RV	PAAD	TCGA-F2-A7TX-01A	BAIAP2L2	chr22	38506482	-	PLA2G6	chr22	38509661	-
5CDS-intron	ENST00000441003	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000441003	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000441003	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000441003	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000441003	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000359061	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000359061	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000359061	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000359061	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000359061	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000361558	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000361558	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000361558	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000361558	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000361558	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000333592	ENST00000513761		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000333592	ENST00000347613		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000333592	ENST00000360642		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000333592	ENST00000504131		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000333592	ENST00000506924		TCGA	RV	PAAD	TCGA-US-A776-01A	MUC2	chr11	1104419	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000496817	ENST00000267101		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000496817	ENST00000450146		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000496817	ENST00000415288		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000496817	ENST00000553131		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000496817	ENST00000411731		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000496817	ENST00000549832		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368719	ENST00000267101		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368719	ENST00000450146		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368719	ENST00000415288		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368719	ENST00000553131		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368719	ENST00000411731		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368719	ENST00000549832		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368720	ENST00000267101		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368720	ENST00000450146		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368720	ENST00000415288		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368720	ENST00000553131		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368720	ENST00000411731		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000368720	ENST00000549832		TCGA	RV	PAAD	TCGA-HZ-7924-01A	S100A6	chr1	153507075	-	ERBB3	chr12	56492035	+
intron-3CDS	ENST00000379725	ENST00000376929		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000379725	ENST00000506690		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000379725	ENST00000389805		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000379725	ENST00000402874		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000379725	ENST00000510187		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000379725	ENST00000360718		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000379723	ENST00000376929		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379723	ENST00000506690		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379723	ENST00000389805		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379723	ENST00000402874		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379723	ENST00000510187		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379723	ENST00000360718		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000379721	ENST00000376929		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379721	ENST00000506690		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379721	ENST00000389805		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379721	ENST00000402874		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379721	ENST00000510187		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000379721	ENST00000360718		TCGA	RV	PAAD	TCGA-HZ-7289-01A	SPINK4	chr9	33248564	+	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000367064	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000367063	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000391921	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
3UTR-3CDS	ENST00000367067	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000314754	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000391920	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000367062	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000367065	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
3UTR-3CDS	ENST00000465534	ENST00000367070		TCGA	RV	PAAD	TCGA-IB-7654-01A	CD55	chr1	207512762	+	C4BPA	chr1	207317889	+
Frame-shit	ENST00000216455	ENST00000254286		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	PSMA3	chr14	58718960	+	ACTR10	chr14	58701088	+
Frame-shit	ENST00000412908	ENST00000254286		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	PSMA3	chr14	58718960	+	ACTR10	chr14	58701088	+
Frame-shit	ENST00000557508	ENST00000254286		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	PSMA3	chr14	58718960	+	ACTR10	chr14	58701088	+
intron-3CDS	ENST00000554456	ENST00000254286		TCGA	RV	PAAD	TCGA-IB-AAUP-01A	PSMA3	chr14	58718960	+	ACTR10	chr14	58701088	+
Frame-shit	ENST00000530927	ENST00000475243		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
Frame-shit	ENST00000530927	ENST00000395802		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
5CDS-3UTR	ENST00000530927	ENST00000265619		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
Frame-shit	ENST00000380815	ENST00000475243		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
Frame-shit	ENST00000380815	ENST00000395802		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
5CDS-3UTR	ENST00000380815	ENST00000265619		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
intron-3CDS	ENST00000467288	ENST00000475243		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
intron-3CDS	ENST00000467288	ENST00000395802		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
intron-3UTR	ENST00000467288	ENST00000265619		TCGA	RV	PAAD	TCGA-IB-7647-01A	GMDS	chr6	1930337	-	VAPB	chr20	57019133	+
5CDS-intron	ENST00000491148	ENST00000354185		TCGA	RV	PAAD	TCGA-IB-7654-01A	CPB1	chr3	148577970	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000282957	ENST00000354185		TCGA	RV	PAAD	TCGA-IB-7654-01A	CPB1	chr3	148577970	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000498639	ENST00000354185		TCGA	RV	PAAD	TCGA-IB-7654-01A	CPB1	chr3	148577970	+	DDX21	chr10	70723858	+
In-frame	ENST00000373025	ENST00000378961		TCGA	RV	PAAD	TCGA-HZ-A49H-01A	PGC	chr6	41704450	-	CHGB	chr20	5905618	+
5CDS-intron	ENST00000373025	ENST00000488832		TCGA	RV	PAAD	TCGA-HZ-A49H-01A	PGC	chr6	41704450	-	CHGB	chr20	5905618	+
intron-3CDS	ENST00000425343	ENST00000378961		TCGA	RV	PAAD	TCGA-HZ-A49H-01A	PGC	chr6	41704450	-	CHGB	chr20	5905618	+
intron-intron	ENST00000425343	ENST00000488832		TCGA	RV	PAAD	TCGA-HZ-A49H-01A	PGC	chr6	41704450	-	CHGB	chr20	5905618	+
In-frame	ENST00000415430	ENST00000262843		TCGA	RV	PAAD	TCGA-US-A77G-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
In-frame	ENST00000415430	ENST00000443968		TCGA	RV	PAAD	TCGA-US-A77G-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
In-frame	ENST00000217957	ENST00000262843		TCGA	RV	PAAD	TCGA-US-A77G-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
In-frame	ENST00000217957	ENST00000443968		TCGA	RV	PAAD	TCGA-US-A77G-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
intron-3CDS	ENST00000485533	ENST00000262843		TCGA	RV	PAAD	TCGA-US-A77G-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
intron-3CDS	ENST00000485533	ENST00000443968		TCGA	RV	PAAD	TCGA-US-A77G-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
intron-3CDS	ENST00000301067	ENST00000283228		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000301067	ENST00000440835		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000301067	ENST00000537619		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000301067	ENST00000378778		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000301067	ENST00000342084		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000301067	ENST00000549308		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000549743	ENST00000283228		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000549743	ENST00000440835		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000549743	ENST00000537619		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000549743	ENST00000378778		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000549743	ENST00000342084		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000549743	ENST00000549308		TCGA	LD	PAAD	TCGA-2J-AAB4-01A	KMT2D	chr12	49453396	-	PTPRR	chr12	71158558	-
Frame-shit	ENST00000389327	ENST00000430863		TCGA	LD	PAAD	TCGA-2J-AABH-01A	TRAPPC9	chr8	141231558	-	MROH5	chr8	142505583	-
Frame-shit	ENST00000389328	ENST00000430863		TCGA	LD	PAAD	TCGA-2J-AABH-01A	TRAPPC9	chr8	141231558	-	MROH5	chr8	142505583	-
Frame-shit	ENST00000438773	ENST00000430863		TCGA	LD	PAAD	TCGA-2J-AABH-01A	TRAPPC9	chr8	141231558	-	MROH5	chr8	142505583	-
intron-3CDS	ENST00000522504	ENST00000430863		TCGA	LD	PAAD	TCGA-2J-AABH-01A	TRAPPC9	chr8	141231558	-	MROH5	chr8	142505583	-
In-frame	ENST00000281081	ENST00000540871		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000281081	ENST00000261479		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000281081	ENST00000553809		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000281081	ENST00000555764		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000281081	ENST00000556506		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000536705	ENST00000540871		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000536705	ENST00000261479		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000536705	ENST00000553809		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000536705	ENST00000555764		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
In-frame	ENST00000536705	ENST00000556506		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
intron-3CDS	ENST00000418681	ENST00000540871		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
intron-3CDS	ENST00000418681	ENST00000261479		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
intron-3CDS	ENST00000418681	ENST00000553809		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
intron-3CDS	ENST00000418681	ENST00000555764		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
intron-3CDS	ENST00000418681	ENST00000556506		TCGA	LD	PAAD	TCGA-2J-AABO-01A	NUBPL	chr14	32068585	+	PSMA6	chr14	35782087	+
5UTR-3CDS	ENST00000222345	ENST00000291458		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
5UTR-intron	ENST00000222345	ENST00000497726		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
5UTR-intron	ENST00000222345	ENST00000466854		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
5UTR-intron	ENST00000222345	ENST00000479899		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
3UTR-3CDS	ENST00000476317	ENST00000291458		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
3UTR-intron	ENST00000476317	ENST00000497726		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
3UTR-intron	ENST00000476317	ENST00000466854		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
3UTR-intron	ENST00000476317	ENST00000479899		TCGA	LD	PAAD	TCGA-2J-AABO-01A	SIPA1L3	chr19	38519796	+	CCDC58	chr3	122090647	-
5CDS-5UTR	ENST00000346872	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346872	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346872	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000394189	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000394189	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000394189	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439167	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439167	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439167	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000535189	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000535189	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000535189	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377944	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377944	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377944	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377945	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377945	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377945	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377952	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377952	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377952	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377958	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377958	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000377958	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346243	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346243	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000346243	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000350532	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000350532	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000350532	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000351680	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000351680	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000351680	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000467757	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000467757	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000467757	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439016	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439016	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000439016	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000583368	ENST00000394246		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000583368	ENST00000269582		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
intron-5UTR	ENST00000583368	ENST00000581428		TCGA	LD	PAAD	TCGA-2J-AABP-01A	IKZF3	chr17	38020373	-	PNMT	chr17	37825882	+
5CDS-5UTR	ENST00000221930	ENST00000526713		TCGA	LD	PAAD	TCGA-2J-AABP-01A	TGFB1	chr19	41838033	-	TRPC6	chr11	101743113	-
5CDS-intron	ENST00000221930	ENST00000344327		TCGA	LD	PAAD	TCGA-2J-AABP-01A	TGFB1	chr19	41838033	-	TRPC6	chr11	101743113	-
5CDS-intron	ENST00000221930	ENST00000532133		TCGA	LD	PAAD	TCGA-2J-AABP-01A	TGFB1	chr19	41838033	-	TRPC6	chr11	101743113	-
5CDS-intron	ENST00000221930	ENST00000360497		TCGA	LD	PAAD	TCGA-2J-AABP-01A	TGFB1	chr19	41838033	-	TRPC6	chr11	101743113	-
5CDS-intron	ENST00000221930	ENST00000348423		TCGA	LD	PAAD	TCGA-2J-AABP-01A	TGFB1	chr19	41838033	-	TRPC6	chr11	101743113	-
5CDS-intron	ENST00000366503	ENST00000483512		TCGA	LD	PAAD	TCGA-2J-AABP-01A	ZNF670	chr1	247241896	-	CNIH3	chr1	224868660	+
5CDS-intron	ENST00000366503	ENST00000272133		TCGA	LD	PAAD	TCGA-2J-AABP-01A	ZNF670	chr1	247241896	-	CNIH3	chr1	224868660	+
5CDS-5UTR	ENST00000361204	ENST00000382097		TCGA	LD	PAAD	TCGA-2J-AABT-01A	SREBF2	chr22	42229362	+	C22orf42	chr22	32555209	-
5CDS-intron	ENST00000361204	ENST00000490640		TCGA	LD	PAAD	TCGA-2J-AABT-01A	SREBF2	chr22	42229362	+	C22orf42	chr22	32555209	-
intron-5UTR	ENST00000491541	ENST00000382097		TCGA	LD	PAAD	TCGA-2J-AABT-01A	SREBF2	chr22	42229362	+	C22orf42	chr22	32555209	-
intron-intron	ENST00000491541	ENST00000490640		TCGA	LD	PAAD	TCGA-2J-AABT-01A	SREBF2	chr22	42229362	+	C22orf42	chr22	32555209	-
Frame-shit	ENST00000331483	ENST00000290122		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
5CDS-intron	ENST00000331483	ENST00000374663		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
intron-3CDS	ENST00000576390	ENST00000290122		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
intron-intron	ENST00000576390	ENST00000374663		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
Frame-shit	ENST00000439918	ENST00000290122		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
5CDS-intron	ENST00000439918	ENST00000374663		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
5UTR-3CDS	ENST00000472244	ENST00000290122		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
5UTR-intron	ENST00000472244	ENST00000374663		TCGA	LD	PAAD	TCGA-2J-AABV-01A	P4HB	chr17	79813018	-	CELA3A	chr1	22338943	+
In-frame	ENST00000369221	ENST00000359621		TCGA	LD	PAAD	TCGA-2J-AABV-01A	PNLIP	chr10	118310744	+	CELA2A	chr1	15798485	+
5CDS-intron	ENST00000369221	ENST00000497590		TCGA	LD	PAAD	TCGA-2J-AABV-01A	PNLIP	chr10	118310744	+	CELA2A	chr1	15798485	+
3UTR-3CDS	ENST00000470562	ENST00000359621		TCGA	LD	PAAD	TCGA-2J-AABV-01A	PNLIP	chr10	118310744	+	CELA2A	chr1	15798485	+
3UTR-intron	ENST00000470562	ENST00000497590		TCGA	LD	PAAD	TCGA-2J-AABV-01A	PNLIP	chr10	118310744	+	CELA2A	chr1	15798485	+
5CDS-5UTR	ENST00000393193	ENST00000389934		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000393193	ENST00000349033		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000393193	ENST00000240361		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-intron	ENST00000393193	ENST00000584699		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
intron-5UTR	ENST00000376392	ENST00000389934		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
intron-5UTR	ENST00000376392	ENST00000349033		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
intron-5UTR	ENST00000376392	ENST00000240361		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
intron-intron	ENST00000376392	ENST00000584699		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000555572	ENST00000389934		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000555572	ENST00000349033		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000555572	ENST00000240361		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-intron	ENST00000555572	ENST00000584699		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	NME2	chr17	49247410	+	TEX14	chr17	56729363	-
5CDS-3UTR	ENST00000396787	ENST00000471864		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000396787	ENST00000484285		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000396787	ENST00000377680		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000378495	ENST00000471864		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000378495	ENST00000484285		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000378495	ENST00000377680		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000378496	ENST00000471864		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000378496	ENST00000484285		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
5CDS-3UTR	ENST00000378496	ENST00000377680		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000481299	ENST00000471864		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000481299	ENST00000484285		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
intron-3UTR	ENST00000481299	ENST00000377680		TCGA	LD	PAAD	TCGA-2L-AAQE-01A	UNC13B	chr9	35259047	+	FAM201A	chr9	38621829	+
intron-3CDS	ENST00000503191	ENST00000262097		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000503191	ENST00000381733		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000503191	ENST00000417108		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000503191	ENST00000520781		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000503191	ENST00000314146		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000503191	ENST00000520051		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
Frame-shit	ENST00000382020	ENST00000262097		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
Frame-shit	ENST00000382020	ENST00000381733		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000382020	ENST00000417108		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000382020	ENST00000520781		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000382020	ENST00000314146		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000382020	ENST00000520051		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000506802	ENST00000262097		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000506802	ENST00000381733		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000506802	ENST00000417108		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000506802	ENST00000520781		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000506802	ENST00000314146		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000506802	ENST00000520051		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000509380	ENST00000262097		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000509380	ENST00000381733		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000509380	ENST00000417108		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000509380	ENST00000520781		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000509380	ENST00000314146		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000509380	ENST00000520051		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
Frame-shit	ENST00000503731	ENST00000262097		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
Frame-shit	ENST00000503731	ENST00000381733		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000503731	ENST00000417108		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000503731	ENST00000520781		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000503731	ENST00000314146		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000503731	ENST00000520051		TCGA	LD	PAAD	TCGA-2L-AAQI-01A	TUSC3	chr8	15605974	+	ASAH1	chr8	17933096	-
In-frame	ENST00000407540	ENST00000338086		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000407540	ENST00000319801		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000407540	ENST00000361078		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000407540	ENST00000536417		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000407540	ENST00000403432		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000407540	ENST00000420234		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000421259	ENST00000338086		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000421259	ENST00000319801		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000421259	ENST00000361078		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000421259	ENST00000536417		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
In-frame	ENST00000421259	ENST00000403432		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000421259	ENST00000420234		TCGA	LD	PAAD	TCGA-2L-AAQJ-01A	MATN3	chr2	20196895	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000261778	ENST00000359154		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
Frame-shit	ENST00000261778	ENST00000448661		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
Frame-shit	ENST00000261778	ENST00000569174		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
Frame-shit	ENST00000261778	ENST00000356003		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
5CDS-3UTR	ENST00000261778	ENST00000544162		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
5CDS-3UTR	ENST00000261778	ENST00000542271		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
5CDS-intron	ENST00000261778	ENST00000568684		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-3CDS	ENST00000561931	ENST00000359154		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-3CDS	ENST00000561931	ENST00000448661		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-3CDS	ENST00000561931	ENST00000569174		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-3CDS	ENST00000561931	ENST00000356003		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-3UTR	ENST00000561931	ENST00000544162		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-3UTR	ENST00000561931	ENST00000542271		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
intron-intron	ENST00000561931	ENST00000568684		TCGA	LD	PAAD	TCGA-3A-A9IB-01A	TANGO6	chr16	69008071	+	WWP2	chr16	69905707	+
Frame-shit	ENST00000303375	ENST00000584396		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	MRC2	chr17	60705281	+	VEZF1	chr17	56060754	-
Frame-shit	ENST00000303375	ENST00000581208		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	MRC2	chr17	60705281	+	VEZF1	chr17	56060754	-
intron-3CDS	ENST00000446119	ENST00000584396		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	MRC2	chr17	60705281	+	VEZF1	chr17	56060754	-
intron-3CDS	ENST00000446119	ENST00000581208		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	MRC2	chr17	60705281	+	VEZF1	chr17	56060754	-
intron-3CDS	ENST00000580916	ENST00000584396		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	MRC2	chr17	60705281	+	VEZF1	chr17	56060754	-
intron-3CDS	ENST00000580916	ENST00000581208		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	MRC2	chr17	60705281	+	VEZF1	chr17	56060754	-
3UTR-3CDS	ENST00000347330	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
3UTR-3CDS	ENST00000347330	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
intron-3CDS	ENST00000413209	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
intron-3CDS	ENST00000413209	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000338641	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000338641	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000403435	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000403435	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000361452	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000361452	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000403999	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000403999	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000334961	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000334961	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000353887	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000353887	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000361166	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000361166	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000397789	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000397789	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000361676	ENST00000344318		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
Frame-shit	ENST00000361676	ENST00000397781		TCGA	LD	PAAD	TCGA-3A-A9IH-01A	NF2	chr22	30074312	+	ZMAT5	chr22	30138469	-
intron-3UTR	ENST00000589651	ENST00000287641		TCGA	LD	PAAD	TCGA-3A-A9IJ-01A	BCAM	chr19	45324578	+	SST	chr3	187386815	-
3UTR-3UTR	ENST00000270233	ENST00000287641		TCGA	LD	PAAD	TCGA-3A-A9IJ-01A	BCAM	chr19	45324578	+	SST	chr3	187386815	-
5CDS-3UTR	ENST00000402744	ENST00000313949		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000402744	ENST00000371098		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000402744	ENST00000371075		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000402744	ENST00000371100		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000371099		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000371102		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000402744	ENST00000464624		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000306120		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000371095		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000371085		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000354359		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000265620		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000306090		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
5CDS-intron	ENST00000402744	ENST00000371081		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	CPE	chr4	166300680	+	GNAS	chr20	57470667	+
In-frame	ENST00000273951	ENST00000402744		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	GC	chr4	72629125	-	CPE	chr4	166388840	+
In-frame	ENST00000504199	ENST00000402744		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	GC	chr4	72629125	-	CPE	chr4	166388840	+
Frame-shit	ENST00000513476	ENST00000402744		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	GC	chr4	72629125	-	CPE	chr4	166388840	+
5UTR-3CDS	ENST00000503472	ENST00000402744		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	GC	chr4	72629125	-	CPE	chr4	166388840	+
5CDS-3UTR	ENST00000389413	ENST00000313949		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389413	ENST00000371098		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389413	ENST00000371075		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389413	ENST00000371100		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000371099		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000371102		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389413	ENST00000464624		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000306120		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000371095		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000371085		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000354359		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000265620		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000306090		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389413	ENST00000371081		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000409483	ENST00000313949		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000409483	ENST00000371098		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000409483	ENST00000371075		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000409483	ENST00000371100		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000371099		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000371102		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000409483	ENST00000464624		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000306120		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000371095		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000371085		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000354359		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000265620		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000306090		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000409483	ENST00000371081		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389416	ENST00000313949		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389416	ENST00000371098		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389416	ENST00000371075		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389416	ENST00000371100		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000371099		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000371102		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389416	ENST00000464624		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000306120		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000371095		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000371085		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000354359		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000265620		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000306090		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389416	ENST00000371081		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389418	ENST00000313949		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389418	ENST00000371098		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389418	ENST00000371075		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389418	ENST00000371100		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000371099		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000371102		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000389418	ENST00000464624		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000306120		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000371095		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000371085		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000354359		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000265620		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000306090		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000389418	ENST00000371081		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000404321	ENST00000313949		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000404321	ENST00000371098		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000404321	ENST00000371075		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000404321	ENST00000371100		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000371099		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000371102		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-3UTR	ENST00000404321	ENST00000464624		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000306120		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000371095		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000371085		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000354359		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000265620		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000306090		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000404321	ENST00000371081		TCGA	LD	PAAD	TCGA-3A-A9IS-01A	PTPRN2	chr7	157691365	-	GNAS	chr20	57470667	+
Frame-shit	ENST00000377022	ENST00000263980		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5CDS-intron	ENST00000377022	ENST00000490329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5CDS-5UTR	ENST00000377022	ENST00000545949		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5CDS-5UTR	ENST00000377022	ENST00000374086		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
Frame-shit	ENST00000344008	ENST00000263980		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5CDS-intron	ENST00000344008	ENST00000490329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5CDS-5UTR	ENST00000344008	ENST00000545949		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5CDS-5UTR	ENST00000344008	ENST00000374086		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5UTR-3CDS	ENST00000478728	ENST00000263980		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5UTR-intron	ENST00000478728	ENST00000490329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5UTR-5UTR	ENST00000478728	ENST00000545949		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
5UTR-5UTR	ENST00000478728	ENST00000374086		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	CASZ1	chr1	10753931	-	SLC9A1	chr1	27436268	-
In-frame	ENST00000584601	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584601	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584601	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584601	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000406381	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000406381	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000406381	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000541774	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000541774	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000541774	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000445658	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000445658	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000445658	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540147	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540147	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540147	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000584450	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000584450	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000584450	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000269571	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000269571	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000269571	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000578199	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000578199	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000578199	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
In-frame	ENST00000540042	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-intron	ENST00000540042	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
5CDS-5UTR	ENST00000540042	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000346329		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000584888	ENST00000301843		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000527622		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-intron	ENST00000584888	ENST00000376561		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-5UTR	ENST00000584888	ENST00000538675		TCGA	LD	PAAD	TCGA-3A-A9J0-01A	ERBB2	chr17	37872192	+	CTTN	chr11	70269046	+
intron-3CDS	ENST00000541592	ENST00000256953		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000541592	ENST00000538313		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000541592	ENST00000536465		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-intron	ENST00000541592	ENST00000546331		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-intron	ENST00000541592	ENST00000537647		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-intron	ENST00000541592	ENST00000437578		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000539745	ENST00000256953		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000539745	ENST00000538313		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-3CDS	ENST00000539745	ENST00000536465		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-intron	ENST00000539745	ENST00000546331		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-intron	ENST00000539745	ENST00000537647		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
intron-intron	ENST00000539745	ENST00000437578		TCGA	LD	PAAD	TCGA-F2-6879-01A	HIST4H4	chr12	14921873	-	RERG	chr12	15274053	-
Frame-shit	ENST00000560955	ENST00000327536		TCGA	LD	PAAD	TCGA-F2-6879-01A	TRPM7	chr15	50949978	-	TNFAIP8L3	chr15	51350640	-
Frame-shit	ENST00000313478	ENST00000327536		TCGA	LD	PAAD	TCGA-F2-6879-01A	TRPM7	chr15	50949978	-	TNFAIP8L3	chr15	51350640	-
intron-3CDS	ENST00000561443	ENST00000327536		TCGA	LD	PAAD	TCGA-F2-6879-01A	TRPM7	chr15	50949978	-	TNFAIP8L3	chr15	51350640	-
Frame-shit	ENST00000351304	ENST00000011292		TCGA	LD	PAAD	TCGA-F2-6880-01A	CEL	chr9	135937455	+	CPA1	chr7	130027665	+
Frame-shit	ENST00000351304	ENST00000484324		TCGA	LD	PAAD	TCGA-F2-6880-01A	CEL	chr9	135937455	+	CPA1	chr7	130027665	+
Frame-shit	ENST00000372080	ENST00000011292		TCGA	LD	PAAD	TCGA-F2-6880-01A	CEL	chr9	135937455	+	CPA1	chr7	130027665	+
Frame-shit	ENST00000372080	ENST00000484324		TCGA	LD	PAAD	TCGA-F2-6880-01A	CEL	chr9	135937455	+	CPA1	chr7	130027665	+
intron-3CDS	ENST00000305089	ENST00000011292		TCGA	LD	PAAD	TCGA-F2-6880-01A	REG1B	chr2	79312341	-	CPA1	chr7	130025743	+
intron-3CDS	ENST00000305089	ENST00000484324		TCGA	LD	PAAD	TCGA-F2-6880-01A	REG1B	chr2	79312341	-	CPA1	chr7	130025743	+
Frame-shit	ENST00000393897	ENST00000351304		TCGA	LD	PAAD	TCGA-F2-7273-01A	REG3G	chr2	79254281	+	CEL	chr9	135941983	+
Frame-shit	ENST00000393897	ENST00000372080		TCGA	LD	PAAD	TCGA-F2-7273-01A	REG3G	chr2	79254281	+	CEL	chr9	135941983	+
Frame-shit	ENST00000272324	ENST00000351304		TCGA	LD	PAAD	TCGA-F2-7273-01A	REG3G	chr2	79254281	+	CEL	chr9	135941983	+
Frame-shit	ENST00000272324	ENST00000372080		TCGA	LD	PAAD	TCGA-F2-7273-01A	REG3G	chr2	79254281	+	CEL	chr9	135941983	+
intron-3CDS	ENST00000409471	ENST00000351304		TCGA	LD	PAAD	TCGA-F2-7273-01A	REG3G	chr2	79254281	+	CEL	chr9	135941983	+
intron-3CDS	ENST00000409471	ENST00000372080		TCGA	LD	PAAD	TCGA-F2-7273-01A	REG3G	chr2	79254281	+	CEL	chr9	135941983	+
In-frame	ENST00000334651	ENST00000250784		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	DHRSX	chrY	2159543	-	RPS4Y1	chrY	2733129	+
5CDS-3UTR	ENST00000334651	ENST00000477725		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	DHRSX	chrY	2159543	-	RPS4Y1	chrY	2733129	+
intron-3CDS	ENST00000464935	ENST00000250784		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	DHRSX	chrY	2159543	-	RPS4Y1	chrY	2733129	+
intron-3UTR	ENST00000464935	ENST00000477725		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	DHRSX	chrY	2159543	-	RPS4Y1	chrY	2733129	+
Frame-shit	ENST00000366835	ENST00000272134		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	TMEM63A	chr1	226053597	-	LEFTY1	chr1	226075732	-
5CDS-5UTR	ENST00000366835	ENST00000492457		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	TMEM63A	chr1	226053597	-	LEFTY1	chr1	226075732	-
intron-3CDS	ENST00000474478	ENST00000272134		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	TMEM63A	chr1	226053597	-	LEFTY1	chr1	226075732	-
intron-5UTR	ENST00000474478	ENST00000492457		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	TMEM63A	chr1	226053597	-	LEFTY1	chr1	226075732	-
5UTR-3CDS	ENST00000537914	ENST00000272134		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	TMEM63A	chr1	226053597	-	LEFTY1	chr1	226075732	-
5UTR-5UTR	ENST00000537914	ENST00000492457		TCGA	LD	PAAD	TCGA-F2-A7TX-01A	TMEM63A	chr1	226053597	-	LEFTY1	chr1	226075732	-
3UTR-3CDS	ENST00000435070	ENST00000052754		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000425043		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000393155		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000228329		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000303320		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000552962		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000441303		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000420120		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000547568		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000435070	ENST00000456569		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000435070	ENST00000546370		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000435070	ENST00000546745		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000435070	ENST00000550099		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000435070	ENST00000551354		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000435070	ENST00000548768		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000052754		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000425043		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000393155		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000228329		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000303320		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000552962		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000441303		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000420120		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000547568		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000456847	ENST00000456569		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000456847	ENST00000546370		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000456847	ENST00000546745		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000456847	ENST00000550099		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000456847	ENST00000551354		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000456847	ENST00000548768		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000052754		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000425043		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000393155		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000228329		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000303320		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000552962		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000441303		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000420120		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000547568		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-3CDS	ENST00000266679	ENST00000456569		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000266679	ENST00000546370		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000266679	ENST00000546745		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000266679	ENST00000550099		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000266679	ENST00000551354		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
3UTR-intron	ENST00000266679	ENST00000548768		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000052754		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000425043		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000393155		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000228329		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000303320		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000552962		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000441303		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000420120		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000547568		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-3CDS	ENST00000550987	ENST00000456569		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-intron	ENST00000550987	ENST00000546370		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-intron	ENST00000550987	ENST00000546745		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-intron	ENST00000550987	ENST00000550099		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-intron	ENST00000550987	ENST00000551354		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
intron-intron	ENST00000550987	ENST00000548768		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
In-frame	ENST00000551516	ENST00000052754		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000425043		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000393155		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000228329		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000303320		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000552962		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000441303		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
Frame-shit	ENST00000551516	ENST00000420120		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
In-frame	ENST00000551516	ENST00000547568		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
In-frame	ENST00000551516	ENST00000456569		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
5CDS-intron	ENST00000551516	ENST00000546370		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
5CDS-intron	ENST00000551516	ENST00000546745		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
5CDS-intron	ENST00000551516	ENST00000550099		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
5CDS-intron	ENST00000551516	ENST00000551354		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
5CDS-intron	ENST00000551516	ENST00000548768		TCGA	LD	PAAD	TCGA-FB-A7DR-01A	CPSF6	chr12	69656342	+	DCN	chr12	91540029	-
5UTR-3UTR	ENST00000410024	ENST00000466801		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000410024	ENST00000409321		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000410024	ENST00000409115		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000410024	ENST00000341369		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000410024	ENST00000409683		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000410024	ENST00000410064		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5CDS-3UTR	ENST00000409295	ENST00000466801		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5CDS-3UTR	ENST00000409295	ENST00000409321		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5CDS-3UTR	ENST00000409295	ENST00000409115		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5CDS-3UTR	ENST00000409295	ENST00000341369		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5CDS-3UTR	ENST00000409295	ENST00000409683		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5CDS-3UTR	ENST00000409295	ENST00000410064		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000409091	ENST00000466801		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000409091	ENST00000409321		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000409091	ENST00000409115		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000409091	ENST00000341369		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000409091	ENST00000409683		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
5UTR-3UTR	ENST00000409091	ENST00000410064		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000350033	ENST00000466801		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000350033	ENST00000409321		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000350033	ENST00000409115		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000350033	ENST00000341369		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000350033	ENST00000409683		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000350033	ENST00000410064		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000410017	ENST00000466801		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000410017	ENST00000409321		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000410017	ENST00000409115		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000410017	ENST00000341369		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000410017	ENST00000409683		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000410017	ENST00000410064		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000373608	ENST00000466801		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000373608	ENST00000409321		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000373608	ENST00000409115		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000373608	ENST00000341369		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000373608	ENST00000409683		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
intron-3UTR	ENST00000373608	ENST00000410064		TCGA	LD	PAAD	TCGA-FB-AAPZ-01A	COPS7B	chr2	232646593	+	PTMA	chr2	232576058	+
Frame-shit	ENST00000588030	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588030	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588030	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589660	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589660	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589660	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588090	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588090	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588090	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000591935	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000591935	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000591935	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589710	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589710	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589710	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588230	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588230	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000588230	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000413636	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000413636	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000413636	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000586472	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000586472	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000586472	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589686	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589686	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589686	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
In-frame	ENST00000444172	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
In-frame	ENST00000444172	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
In-frame	ENST00000444172	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000587323	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000587323	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000587323	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000320936	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000320936	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000320936	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
In-frame	ENST00000587896	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
In-frame	ENST00000587896	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
In-frame	ENST00000587896	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589235	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589235	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000589235	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000585630	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000585630	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000585630	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000586773	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000586773	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000586773	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
intron-3CDS	ENST00000590188	ENST00000238483		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
intron-3CDS	ENST00000590188	ENST00000233607		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
intron-3CDS	ENST00000590188	ENST00000535453		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	CIRBP	chr19	1272050	+	APC2	chr19	1465154	+
Frame-shit	ENST00000287437	ENST00000287380		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000287437	ENST00000309336		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000287437	ENST00000327098		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000287437	ENST00000522420		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000287437	ENST00000521676		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
5CDS-3UTR	ENST00000287437	ENST00000378080		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
5CDS-3UTR	ENST00000287437	ENST00000518805		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000522563	ENST00000287380		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000522563	ENST00000309336		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000522563	ENST00000327098		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000522563	ENST00000522420		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000522563	ENST00000521676		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
5CDS-3UTR	ENST00000522563	ENST00000378080		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
5CDS-3UTR	ENST00000522563	ENST00000518805		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000517315	ENST00000287380		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000517315	ENST00000309336		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000517315	ENST00000327098		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000517315	ENST00000522420		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
Frame-shit	ENST00000517315	ENST00000521676		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
5CDS-3UTR	ENST00000517315	ENST00000378080		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
5CDS-3UTR	ENST00000517315	ENST00000518805		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3CDS	ENST00000521460	ENST00000287380		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3CDS	ENST00000521460	ENST00000309336		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3CDS	ENST00000521460	ENST00000327098		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3CDS	ENST00000521460	ENST00000522420		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3CDS	ENST00000521460	ENST00000521676		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3UTR	ENST00000521460	ENST00000378080		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
intron-3UTR	ENST00000521460	ENST00000518805		TCGA	LD	PAAD	TCGA-FB-AAQ2-01A	NSMCE2	chr8	126194498	+	TBC1D31	chr8	124153001	+
In-frame	ENST00000318008	ENST00000216225		TCGA	LD	PAAD	TCGA-FB-AAQ3-01A	LASP1	chr17	37046757	+	RBX1	chr22	41349559	+
intron-3CDS	ENST00000433206	ENST00000216225		TCGA	LD	PAAD	TCGA-FB-AAQ3-01A	LASP1	chr17	37046757	+	RBX1	chr22	41349559	+
In-frame	ENST00000435347	ENST00000216225		TCGA	LD	PAAD	TCGA-FB-AAQ3-01A	LASP1	chr17	37046757	+	RBX1	chr22	41349559	+
5UTR-5UTR	ENST00000265755	ENST00000431197		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000265755	ENST00000285871		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-intron	ENST00000265755	ENST00000415740		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000455841	ENST00000431197		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000455841	ENST00000285871		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-intron	ENST00000455841	ENST00000415740		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000424337	ENST00000431197		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000424337	ENST00000285871		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-intron	ENST00000424337	ENST00000415740		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000476977	ENST00000431197		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000476977	ENST00000285871		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-intron	ENST00000476977	ENST00000415740		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000489094	ENST00000431197		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000489094	ENST00000285871		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-intron	ENST00000489094	ENST00000415740		TCGA	LD	PAAD	TCGA-H6-8124-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5CDS-intron	ENST00000440693	ENST00000500890		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000440693	ENST00000507827		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000440693	ENST00000336356		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000409663	ENST00000500890		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000409663	ENST00000507827		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000409663	ENST00000336356		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000409959	ENST00000500890		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000409959	ENST00000507827		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000409959	ENST00000336356		TCGA	LD	PAAD	TCGA-H8-A6C1-01A	KIAA0922	chr4	154395040	+	LRAT	chr4	155649855	+
Frame-shit	ENST00000378743	ENST00000283228		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
Frame-shit	ENST00000378743	ENST00000440835		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
5CDS-intron	ENST00000378743	ENST00000537619		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
5CDS-intron	ENST00000378743	ENST00000378778		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
5CDS-intron	ENST00000378743	ENST00000342084		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
5CDS-intron	ENST00000378743	ENST00000549308		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000548100	ENST00000283228		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000548100	ENST00000440835		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000548100	ENST00000537619		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000548100	ENST00000378778		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000548100	ENST00000342084		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000548100	ENST00000549308		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000552037	ENST00000283228		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000552037	ENST00000440835		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000552037	ENST00000537619		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000552037	ENST00000378778		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000552037	ENST00000342084		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000552037	ENST00000549308		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000549407	ENST00000283228		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000549407	ENST00000440835		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000549407	ENST00000537619		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000549407	ENST00000378778		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000549407	ENST00000342084		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-intron	ENST00000549407	ENST00000549308		TCGA	LD	PAAD	TCGA-HV-A5A3-01A	ZFC3H1	chr12	72017140	-	PTPRR	chr12	71139866	-
intron-3CDS	ENST00000222345	ENST00000409235		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
intron-3CDS	ENST00000222345	ENST00000410018		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
intron-3UTR	ENST00000222345	ENST00000215069		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
intron-intron	ENST00000222345	ENST00000467739		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
3UTR-3CDS	ENST00000476317	ENST00000409235		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
3UTR-3CDS	ENST00000476317	ENST00000410018		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
3UTR-3UTR	ENST00000476317	ENST00000215069		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
3UTR-intron	ENST00000476317	ENST00000467739		TCGA	LD	PAAD	TCGA-HV-A5A5-01A	SIPA1L3	chr19	38423332	+	CATSPERG	chr19	38860799	+
In-frame	ENST00000380817	ENST00000395876		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000380817	ENST00000311597		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000380817	ENST00000538737		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000380817	ENST00000431262		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000380817	ENST00000535444		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000380817	ENST00000450140		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
5CDS-5UTR	ENST00000380817	ENST00000483836		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000348911	ENST00000395876		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000348911	ENST00000311597		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000348911	ENST00000538737		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000348911	ENST00000431262		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000348911	ENST00000535444		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000348911	ENST00000450140		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
5CDS-5UTR	ENST00000348911	ENST00000483836		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000390679	ENST00000395876		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000390679	ENST00000311597		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000390679	ENST00000538737		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000390679	ENST00000431262		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000390679	ENST00000535444		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
In-frame	ENST00000390679	ENST00000450140		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
5CDS-5UTR	ENST00000390679	ENST00000483836		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-3CDS	ENST00000476293	ENST00000395876		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-3CDS	ENST00000476293	ENST00000311597		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-3CDS	ENST00000476293	ENST00000538737		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-3CDS	ENST00000476293	ENST00000431262		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-3CDS	ENST00000476293	ENST00000535444		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-3CDS	ENST00000476293	ENST00000450140		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
intron-5UTR	ENST00000476293	ENST00000483836		TCGA	LD	PAAD	TCGA-HV-A5A6-01A	SBF1	chr22	50913215	-	MLC1	chr22	50506984	-
5CDS-5UTR	ENST00000298248	ENST00000241124		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000298248	ENST00000400066		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000298248	ENST00000400065		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000298248	ENST00000356192		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000241124		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000400066		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000400065		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000356192		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000241124		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000400066		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000400065		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000356192		TCGA	LD	PAAD	TCGA-HZ-7289-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
In-frame	ENST00000351304	ENST00000392302		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000351304	ENST00000368196		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000351304	ENST00000524377		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000351304	ENST00000358660		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000351304	ENST00000531606		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000372080	ENST00000392302		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000372080	ENST00000368196		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000372080	ENST00000524377		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
In-frame	ENST00000372080	ENST00000358660		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
5CDS-intron	ENST00000372080	ENST00000531606		TCGA	LD	PAAD	TCGA-HZ-7918-01A	CEL	chr9	135942592	+	NTRK1	chr1	156843425	+
Frame-shit	ENST00000317551	ENST00000552032		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000317551	ENST00000547771		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000317551	ENST00000299350		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000317551	ENST00000535034		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-3CDS	ENST00000422340	ENST00000552032		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-3CDS	ENST00000422340	ENST00000547771		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000422340	ENST00000299350		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000422340	ENST00000535034		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-3CDS	ENST00000547852	ENST00000552032		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-3CDS	ENST00000547852	ENST00000547771		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000547852	ENST00000299350		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000547852	ENST00000535034		TCGA	LD	PAAD	TCGA-HZ-7922-01A	CERS5	chr12	50560884	-	MYRFL	chr12	70249060	+
In-frame	ENST00000264818	ENST00000222005		TCGA	LD	PAAD	TCGA-HZ-7926-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
intron-3CDS	ENST00000524462	ENST00000222005		TCGA	LD	PAAD	TCGA-HZ-7926-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
Frame-shit	ENST00000525621	ENST00000222005		TCGA	LD	PAAD	TCGA-HZ-7926-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
Frame-shit	ENST00000529370	ENST00000222005		TCGA	LD	PAAD	TCGA-HZ-7926-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
intron-3CDS	ENST00000529422	ENST00000222005		TCGA	LD	PAAD	TCGA-HZ-7926-01A	TYK2	chr19	10488890	-	CDC37	chr19	10504117	-
5CDS-5UTR	ENST00000369577	ENST00000315677		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-5UTR	ENST00000369577	ENST00000581527		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000400147		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000400149		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000400155		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000400150		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000584874		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000534970		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000539435		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000581699		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000400145		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000515196		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000369577	ENST00000478161		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-5UTR	ENST00000339907	ENST00000315677		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-5UTR	ENST00000339907	ENST00000581527		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000400147		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000400149		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000400155		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000400150		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000584874		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000534970		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000539435		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000581699		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000400145		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000515196		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
5CDS-intron	ENST00000339907	ENST00000478161		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-5UTR	ENST00000392985	ENST00000315677		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-5UTR	ENST00000392985	ENST00000581527		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000400147		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000400149		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000400155		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000400150		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000584874		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000534970		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000539435		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000581699		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000400145		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000515196		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
intron-intron	ENST00000392985	ENST00000478161		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-5UTR	ENST00000369578	ENST00000315677		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-5UTR	ENST00000369578	ENST00000581527		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000400147		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000400149		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000400155		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000400150		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000584874		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000534970		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000539435		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000581699		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000400145		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000515196		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
3UTR-intron	ENST00000369578	ENST00000478161		TCGA	LD	PAAD	TCGA-HZ-7926-01A	ZNF292	chr6	87928449	+	DLGAP1	chr18	4151287	-
Frame-shit	ENST00000309364	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000309364	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000309364	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000309364	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000359180	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000359180	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000359180	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000359180	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000317589	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000317589	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000317589	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000317589	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000355397	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000355397	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000355397	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000355397	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000429027	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000429027	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000429027	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000429027	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5UTR-3CDS	ENST00000539256	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5UTR-3CDS	ENST00000539256	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5UTR-intron	ENST00000539256	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5UTR-intron	ENST00000539256	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000299275	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000299275	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000299275	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000299275	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000538714	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000538714	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000538714	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000538714	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-3CDS	ENST00000543806	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-3CDS	ENST00000543806	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-intron	ENST00000543806	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-intron	ENST00000543806	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-3CDS	ENST00000424268	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-3CDS	ENST00000424268	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-intron	ENST00000424268	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-intron	ENST00000424268	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000540972	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
Frame-shit	ENST00000540972	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000540972	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
5CDS-intron	ENST00000540972	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-3CDS	ENST00000510738	ENST00000229243		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-3CDS	ENST00000510738	ENST00000414226		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-intron	ENST00000510738	ENST00000542357		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
intron-intron	ENST00000510738	ENST00000536350		TCGA	LD	PAAD	TCGA-HZ-8002-01A	PLEKHA5	chr12	19285384	+	ACRBP	chr12	6755743	-
3UTR-3CDS	ENST00000375980	ENST00000303037		TCGA	LD	PAAD	TCGA-HZ-8003-01A	EFHD2	chr1	15755891	+	CTRB2	chr16	75240009	-
3UTR-3CDS	ENST00000393897	ENST00000011292		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255554	+	CPA1	chr7	130021954	+
3UTR-3CDS	ENST00000393897	ENST00000484324		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255554	+	CPA1	chr7	130021954	+
3UTR-3CDS	ENST00000272324	ENST00000011292		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255554	+	CPA1	chr7	130021954	+
3UTR-3CDS	ENST00000272324	ENST00000484324		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255554	+	CPA1	chr7	130021954	+
intron-3CDS	ENST00000409471	ENST00000011292		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255554	+	CPA1	chr7	130021954	+
intron-3CDS	ENST00000409471	ENST00000484324		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255554	+	CPA1	chr7	130021954	+
Frame-shit	ENST00000393897	ENST00000486171		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255035	+	PRSS1	chr7	142459815	+
Frame-shit	ENST00000393897	ENST00000311737		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255035	+	PRSS1	chr7	142459815	+
Frame-shit	ENST00000272324	ENST00000486171		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255035	+	PRSS1	chr7	142459815	+
Frame-shit	ENST00000272324	ENST00000311737		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255035	+	PRSS1	chr7	142459815	+
Frame-shit	ENST00000409471	ENST00000486171		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255035	+	PRSS1	chr7	142459815	+
Frame-shit	ENST00000409471	ENST00000311737		TCGA	LD	PAAD	TCGA-HZ-8003-01A	REG3G	chr2	79255035	+	PRSS1	chr7	142459815	+
5UTR-5UTR	ENST00000392347	ENST00000269389		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
5UTR-5UTR	ENST00000392347	ENST00000580437		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
5UTR-5UTR	ENST00000389641	ENST00000269389		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
5UTR-5UTR	ENST00000389641	ENST00000580437		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000392346	ENST00000269389		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000392346	ENST00000580437		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000327026	ENST00000269389		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
intron-5UTR	ENST00000327026	ENST00000580437		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
5UTR-5UTR	ENST00000392343	ENST00000269389		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
5UTR-5UTR	ENST00000392343	ENST00000580437		TCGA	LD	PAAD	TCGA-HZ-8005-01A	CCDC57	chr17	80170661	-	SECTM1	chr17	80285168	-
5UTR-3CDS	ENST00000332272	ENST00000219368		TCGA	LD	PAAD	TCGA-HZ-8317-01A	CHST6	chr16	75515715	-	FA2H	chr16	74774013	-
5UTR-5UTR	ENST00000332272	ENST00000544337		TCGA	LD	PAAD	TCGA-HZ-8317-01A	CHST6	chr16	75515715	-	FA2H	chr16	74774013	-
5UTR-3CDS	ENST00000390664	ENST00000219368		TCGA	LD	PAAD	TCGA-HZ-8317-01A	CHST6	chr16	75515715	-	FA2H	chr16	74774013	-
5UTR-5UTR	ENST00000390664	ENST00000544337		TCGA	LD	PAAD	TCGA-HZ-8317-01A	CHST6	chr16	75515715	-	FA2H	chr16	74774013	-
5UTR-5UTR	ENST00000519824	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519824	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519824	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000519824	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000522746	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000522746	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000522746	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000522746	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000523509	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000523509	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000523509	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000523509	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000401979	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000401979	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000401979	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000401979	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519110	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519110	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519110	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000519110	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
intron-5UTR	ENST00000522250	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
intron-5UTR	ENST00000522250	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
intron-5UTR	ENST00000522250	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
intron-intron	ENST00000522250	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000517654	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000517654	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000517654	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000517654	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519540	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519540	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000519540	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000519540	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000522941	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000522941	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000522941	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000522941	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000518879	ENST00000501396		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000518879	ENST00000502082		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-5UTR	ENST00000518879	ENST00000523825		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
5UTR-intron	ENST00000518879	ENST00000502056		TCGA	LD	PAAD	TCGA-HZ-8317-01A	FAM49B	chr8	130915558	-	CASC8	chr8	128433208	-
Frame-shit	ENST00000400473	ENST00000285039		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000400473	ENST00000324581		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000400473	ENST00000592688		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000400473	ENST00000587895		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
Frame-shit	ENST00000256925	ENST00000285039		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000256925	ENST00000324581		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000256925	ENST00000592688		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000256925	ENST00000587895		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
intron-3CDS	ENST00000585061	ENST00000285039		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
intron-intron	ENST00000585061	ENST00000324581		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
intron-intron	ENST00000585061	ENST00000592688		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
intron-intron	ENST00000585061	ENST00000587895		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
Frame-shit	ENST00000420687	ENST00000285039		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000420687	ENST00000324581		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000420687	ENST00000592688		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
5CDS-intron	ENST00000420687	ENST00000587895		TCGA	LD	PAAD	TCGA-HZ-8636-01A	CABLES1	chr18	20774504	+	MYO5B	chr18	47581748	-
Frame-shit	ENST00000352645	ENST00000216225		TCGA	LD	PAAD	TCGA-HZ-8637-01A	ZC3H7B	chr22	41752812	+	RBX1	chr22	41368480	+
Frame-shit	ENST00000351589	ENST00000216225		TCGA	LD	PAAD	TCGA-HZ-8637-01A	ZC3H7B	chr22	41752812	+	RBX1	chr22	41368480	+
intron-3CDS	ENST00000369005	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369005	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000369005	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000513429	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000513429	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000513429	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000515273	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000515273	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000515273	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000515603	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000515603	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000515603	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000453444	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000453444	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000453444	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000358010	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000358010	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000358010	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000334433	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000334433	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000334433	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369001	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369001	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000369001	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369000	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369000	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000369000	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000360561	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000360561	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000360561	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000368999	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000368999	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000368999	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369004	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000369004	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000369004	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000260733	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000260733	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000260733	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000493951	ENST00000359015		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-3CDS	ENST00000493951	ENST00000355845		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
intron-intron	ENST00000493951	ENST00000463140		TCGA	LD	PAAD	TCGA-HZ-A49G-01A	TACC2	chr10	123779396	+	MAP3K5	chr6	136932525	-
5CDS-intron	ENST00000301178	ENST00000312127		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000301178	ENST00000354433		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000301178	ENST00000395906		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000301178	ENST00000583965		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000359092	ENST00000312127		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000359092	ENST00000354433		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000359092	ENST00000395906		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5CDS-intron	ENST00000359092	ENST00000583965		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
intron-intron	ENST00000594880	ENST00000312127		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
intron-intron	ENST00000594880	ENST00000354433		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
intron-intron	ENST00000594880	ENST00000395906		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
intron-intron	ENST00000594880	ENST00000583965		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5UTR-intron	ENST00000593513	ENST00000312127		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5UTR-intron	ENST00000593513	ENST00000354433		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5UTR-intron	ENST00000593513	ENST00000395906		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
5UTR-intron	ENST00000593513	ENST00000583965		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	AXL	chr19	41737203	+	CDRT1	chr17	15469667	-
Frame-shit	ENST00000333957	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000333957	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000333957	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000333957	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000333957	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000333957	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000446597	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000446597	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000446597	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000446597	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000446597	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000446597	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000536386	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000536386	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000536386	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000536386	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000536386	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000536386	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000396028	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000396028	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000396028	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000396028	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000396028	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000396028	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000542676	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000542676	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000542676	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000542676	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000542676	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000542676	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000544930	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000544930	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000544930	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000544930	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
In-frame	ENST00000544930	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000544930	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000545552	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000545552	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000545552	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000545552	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000545552	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
5CDS-5UTR	ENST00000545552	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
intron-3CDS	ENST00000540703	ENST00000261192		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
intron-3CDS	ENST00000540703	ENST00000538118		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
intron-3CDS	ENST00000540703	ENST00000342945		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
intron-3CDS	ENST00000540703	ENST00000539282		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
intron-3CDS	ENST00000540703	ENST00000539780		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
intron-5UTR	ENST00000540703	ENST00000544418		TCGA	LD	PAAD	TCGA-HZ-A49I-01A	C2CD5	chr12	22627685	-	BCAT1	chr12	25002883	-
Frame-shit	ENST00000252699	ENST00000263257		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
5CDS-intron	ENST00000252699	ENST00000599462		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
Frame-shit	ENST00000424234	ENST00000263257		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
5CDS-intron	ENST00000424234	ENST00000599462		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
Frame-shit	ENST00000390009	ENST00000263257		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
5CDS-intron	ENST00000390009	ENST00000599462		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
intron-3CDS	ENST00000497637	ENST00000263257		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
intron-intron	ENST00000497637	ENST00000599462		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	ACTN4	chr19	39138547	+	NOVA2	chr19	46464411	-
In-frame	ENST00000264220	ENST00000295666		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	PPAT	chr4	57267496	-	IGFBP7	chr4	57907099	-
In-frame	ENST00000264220	ENST00000537922		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	PPAT	chr4	57267496	-	IGFBP7	chr4	57907099	-
5CDS-5UTR	ENST00000264220	ENST00000512512		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	PPAT	chr4	57267496	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000507648	ENST00000295666		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	PPAT	chr4	57267496	-	IGFBP7	chr4	57907099	-
intron-3CDS	ENST00000507648	ENST00000537922		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	PPAT	chr4	57267496	-	IGFBP7	chr4	57907099	-
intron-5UTR	ENST00000507648	ENST00000512512		TCGA	LD	PAAD	TCGA-HZ-A4BH-01A	PPAT	chr4	57267496	-	IGFBP7	chr4	57907099	-
5CDS-5UTR	ENST00000379141	ENST00000548446		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000420353		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000415113		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000456903		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000548118		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000591397		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000379141	ENST00000328463		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000379141	ENST00000546661		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000548446		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000420353		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000415113		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000456903		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000548118		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000591397		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-5UTR	ENST00000320743	ENST00000328463		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000320743	ENST00000546661		TCGA	LD	PAAD	TCGA-HZ-A4BK-01A	LRIG3	chr12	59307763	-	ATF7	chr12	53994805	-
5CDS-intron	ENST00000287908	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000287908	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000287908	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394626	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394626	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394626	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394622	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394622	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394622	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394632	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394632	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394632	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394621	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394621	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394621	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000402625	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000402625	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000402625	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394629	ENST00000469675		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394629	ENST00000257659		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000394629	ENST00000222511		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	STEAP2	chr7	89856812	+	GTPBP10	chr7	90001469	+
In-frame	ENST00000378198	ENST00000378454		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
5CDS-intron	ENST00000378198	ENST00000378450		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
In-frame	ENST00000545995	ENST00000378454		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
5CDS-intron	ENST00000545995	ENST00000378450		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
In-frame	ENST00000341060	ENST00000378454		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
5CDS-intron	ENST00000341060	ENST00000378450		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
intron-3CDS	ENST00000478285	ENST00000378454		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
intron-intron	ENST00000478285	ENST00000378450		TCGA	LD	PAAD	TCGA-HZ-A77P-01A	TDP2	chr6	24653211	-	DCDC2	chr6	24302272	-
Frame-shit	ENST00000416426	ENST00000184956		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000416426	ENST00000585976		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
5CDS-intron	ENST00000416426	ENST00000585712		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000284073	ENST00000184956		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000284073	ENST00000585976		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
5CDS-intron	ENST00000284073	ENST00000585712		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000322684	ENST00000184956		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000322684	ENST00000585976		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
5CDS-intron	ENST00000322684	ENST00000585712		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000442934	ENST00000184956		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000442934	ENST00000585976		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
5CDS-intron	ENST00000442934	ENST00000585712		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000579180	ENST00000184956		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
Frame-shit	ENST00000579180	ENST00000585976		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
5CDS-intron	ENST00000579180	ENST00000585712		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
3UTR-3CDS	ENST00000579505	ENST00000184956		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
3UTR-3CDS	ENST00000579505	ENST00000585976		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
3UTR-intron	ENST00000579505	ENST00000585712		TCGA	LD	PAAD	TCGA-IB-7646-01A	MSI2	chr17	55607085	+	HEATR6	chr17	58148168	-
3UTR-intron	ENST00000519246	ENST00000519301		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000520407		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000523079		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000338921		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000356819		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000287845		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000341377		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000287842		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000521670		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000405005		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000520502		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000539990		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
3UTR-intron	ENST00000519246	ENST00000523681		TCGA	LD	PAAD	TCGA-IB-7646-01A	UBXN8	chr8	30614404	+	NRG1	chr8	32144617	+
5UTR-3CDS	ENST00000324189	ENST00000538010		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
5UTR-3CDS	ENST00000324189	ENST00000261822		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
5UTR-3CDS	ENST00000546192	ENST00000538010		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
5UTR-3CDS	ENST00000546192	ENST00000261822		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
3UTR-3CDS	ENST00000545141	ENST00000538010		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
3UTR-3CDS	ENST00000545141	ENST00000261822		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
intron-3CDS	ENST00000535274	ENST00000538010		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
intron-3CDS	ENST00000535274	ENST00000261822		TCGA	LD	PAAD	TCGA-IB-7647-01A	B3GNT4	chr12	122688348	+	BCL7A	chr12	122468606	+
In-frame	ENST00000351304	ENST00000011292		TCGA	LD	PAAD	TCGA-IB-7652-01A	CEL	chr9	135940149	+	CPA1	chr7	130024987	+
In-frame	ENST00000351304	ENST00000484324		TCGA	LD	PAAD	TCGA-IB-7652-01A	CEL	chr9	135940149	+	CPA1	chr7	130024987	+
In-frame	ENST00000372080	ENST00000011292		TCGA	LD	PAAD	TCGA-IB-7652-01A	CEL	chr9	135940149	+	CPA1	chr7	130024987	+
In-frame	ENST00000372080	ENST00000484324		TCGA	LD	PAAD	TCGA-IB-7652-01A	CEL	chr9	135940149	+	CPA1	chr7	130024987	+
Frame-shit	ENST00000369037	ENST00000581852		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000403303		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000383096		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000300227		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000579916		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000406524		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000583930		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000402325		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369037	ENST00000579947		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000369037	ENST00000583550		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000581852		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000403303		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000383096		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000300227		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000579916		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000406524		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000583930		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000402325		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000453874	ENST00000579947		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000453874	ENST00000583550		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000581852		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000403303		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000383096		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000300227		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000579916		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000406524		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000583930		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000402325		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
Frame-shit	ENST00000369031	ENST00000579947		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
5CDS-intron	ENST00000369031	ENST00000583550		TCGA	LD	PAAD	TCGA-IB-7652-01A	PDSS2	chr6	107655402	-	CCDC178	chr18	30554645	-
5CDS-5UTR	ENST00000400590	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000400590	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000400590	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000400590	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000320220	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000320220	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000320220	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000320220	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382466	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382466	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382466	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382466	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000542645	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000542645	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000542645	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000542645	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000415724	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000415724	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000415724	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000415724	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000422251	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000422251	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000422251	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000422251	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
intron-5UTR	ENST00000494731	ENST00000241124		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
intron-5UTR	ENST00000494731	ENST00000400066		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
intron-5UTR	ENST00000494731	ENST00000400065		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
intron-5UTR	ENST00000494731	ENST00000356192		TCGA	LD	PAAD	TCGA-IB-7652-01A	ZDHHC20	chr13	22033193	-	GJB6	chr13	20797634	-
5UTR-3CDS	ENST00000393799	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393799	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393799	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000393799	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
3UTR-3CDS	ENST00000530427	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
3UTR-3CDS	ENST00000530427	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
3UTR-3CDS	ENST00000530427	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
3UTR-3UTR	ENST00000530427	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393800	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393800	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393800	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000393800	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000534534	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000534534	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000534534	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000534534	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000524845	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000524845	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000524845	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000524845	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
intron-3CDS	ENST00000265637	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
intron-3CDS	ENST00000265637	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
intron-3CDS	ENST00000265637	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
intron-3UTR	ENST00000265637	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000524904	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000524904	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000524904	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000524904	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393801	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393801	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000393801	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000393801	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000265636	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000265636	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000265636	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000265636	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000529710	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000529710	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000529710	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000529710	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000527403	ENST00000308127		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000527403	ENST00000308298		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000527403	ENST00000376757		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3UTR	ENST00000527403	ENST00000532181		TCGA	LD	PAAD	TCGA-IB-7654-01A	PPP6R3	chr11	68287119	+	SSH3	chr11	67074309	+
5UTR-3CDS	ENST00000434457	ENST00000339399		TCGA	LD	PAAD	TCGA-IB-7890-01A	DENND4C	chr9	19230831	+	ANP32B	chr9	100773553	+
5UTR-intron	ENST00000434457	ENST00000473205		TCGA	LD	PAAD	TCGA-IB-7890-01A	DENND4C	chr9	19230831	+	ANP32B	chr9	100773553	+
5UTR-3CDS	ENST00000602925	ENST00000339399		TCGA	LD	PAAD	TCGA-IB-7890-01A	DENND4C	chr9	19230831	+	ANP32B	chr9	100773553	+
5UTR-intron	ENST00000602925	ENST00000473205		TCGA	LD	PAAD	TCGA-IB-7890-01A	DENND4C	chr9	19230831	+	ANP32B	chr9	100773553	+
intron-3CDS	ENST00000380432	ENST00000339399		TCGA	LD	PAAD	TCGA-IB-7890-01A	DENND4C	chr9	19230831	+	ANP32B	chr9	100773553	+
intron-intron	ENST00000380432	ENST00000473205		TCGA	LD	PAAD	TCGA-IB-7890-01A	DENND4C	chr9	19230831	+	ANP32B	chr9	100773553	+
In-frame	ENST00000324856	ENST00000319394		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000324856	ENST00000361771		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000457599	ENST00000319394		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000457599	ENST00000361771		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000374152	ENST00000319394		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000374152	ENST00000361771		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000540690	ENST00000319394		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
In-frame	ENST00000540690	ENST00000361771		TCGA	LD	PAAD	TCGA-IB-7893-01A	ARID1A	chr1	27102198	+	WDTC1	chr1	27608730	+
Frame-shit	ENST00000230538	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
Frame-shit	ENST00000230538	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
In-frame	ENST00000522006	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
In-frame	ENST00000522006	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
Frame-shit	ENST00000389463	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
Frame-shit	ENST00000389463	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
In-frame	ENST00000424408	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
In-frame	ENST00000424408	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000524032	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000524032	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000431543	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000431543	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000368638	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000368638	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000453937	ENST00000394936		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
intron-3CDS	ENST00000453937	ENST00000394934		TCGA	LD	PAAD	TCGA-IB-7893-01A	LAMA4	chr6	112493813	-	PSAP	chr10	73581764	-
In-frame	ENST00000223095	ENST00000297268		TCGA	LD	PAAD	TCGA-IB-A5SS-01A	SERPINE1	chr7	100771945	+	COL1A2	chr7	94059559	+
In-frame	ENST00000445463	ENST00000297268		TCGA	LD	PAAD	TCGA-IB-A5SS-01A	SERPINE1	chr7	100771945	+	COL1A2	chr7	94059559	+
In-frame	ENST00000353704	ENST00000377996		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
In-frame	ENST00000353704	ENST00000439587		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
In-frame	ENST00000353704	ENST00000377991		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
5CDS-3UTR	ENST00000353704	ENST00000473947		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
5CDS-3UTR	ENST00000353704	ENST00000377988		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
3UTR-3CDS	ENST00000486056	ENST00000377996		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
3UTR-3CDS	ENST00000486056	ENST00000439587		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
3UTR-3CDS	ENST00000486056	ENST00000377991		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
3UTR-3UTR	ENST00000486056	ENST00000473947		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
3UTR-3UTR	ENST00000486056	ENST00000377988		TCGA	LD	PAAD	TCGA-IB-A5ST-01A	CREB3	chr9	35733482	+	TMEM8B	chr9	35845972	+
In-frame	ENST00000220592	ENST00000220913		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	AGO2	chr8	141645584	-	CHRAC1	chr8	141524468	+
5CDS-intron	ENST00000220592	ENST00000519533		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	AGO2	chr8	141645584	-	CHRAC1	chr8	141524468	+
In-frame	ENST00000519980	ENST00000220913		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	AGO2	chr8	141645584	-	CHRAC1	chr8	141524468	+
5CDS-intron	ENST00000519980	ENST00000519533		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	AGO2	chr8	141645584	-	CHRAC1	chr8	141524468	+
5UTR-3CDS	ENST00000517293	ENST00000220913		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	AGO2	chr8	141645584	-	CHRAC1	chr8	141524468	+
5UTR-intron	ENST00000517293	ENST00000519533		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	AGO2	chr8	141645584	-	CHRAC1	chr8	141524468	+
In-frame	ENST00000273009	ENST00000409613		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
In-frame	ENST00000273009	ENST00000264059		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000273009	ENST00000409708		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000273009	ENST00000410095		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000360410	ENST00000409613		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000360410	ENST00000264059		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000360410	ENST00000409708		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000360410	ENST00000410095		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
In-frame	ENST00000325385	ENST00000409613		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
In-frame	ENST00000325385	ENST00000264059		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000325385	ENST00000409708		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000325385	ENST00000410095		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000409401	ENST00000409613		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000409401	ENST00000264059		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000409401	ENST00000409708		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000409401	ENST00000410095		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409307	ENST00000409613		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
In-frame	ENST00000409307	ENST00000264059		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409307	ENST00000409708		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
5CDS-5UTR	ENST00000409307	ENST00000410095		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000470087	ENST00000409613		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-3CDS	ENST00000470087	ENST00000264059		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000470087	ENST00000409708		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
intron-5UTR	ENST00000470087	ENST00000410095		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	DIS3L2	chr2	233028342	+	EFHD1	chr2	233527512	+
Frame-shit	ENST00000301738	ENST00000397066		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	KCTD5	chr16	2746044	+	CCNF	chr16	2493650	+
Frame-shit	ENST00000564195	ENST00000397066		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	KCTD5	chr16	2746044	+	CCNF	chr16	2493650	+
intron-3CDS	ENST00000569689	ENST00000397066		TCGA	LD	PAAD	TCGA-IB-A6UF-01A	KCTD5	chr16	2746044	+	CCNF	chr16	2493650	+
5UTR-3CDS	ENST00000355630	ENST00000325157		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-intron	ENST00000355630	ENST00000490326		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-3CDS	ENST00000396617	ENST00000325157		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-intron	ENST00000396617	ENST00000490326		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-3CDS	ENST00000402042	ENST00000325157		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-intron	ENST00000402042	ENST00000490326		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-3CDS	ENST00000466278	ENST00000325157		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
5UTR-intron	ENST00000466278	ENST00000490326		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
intron-3CDS	ENST00000407029	ENST00000325157		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
intron-intron	ENST00000407029	ENST00000490326		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
intron-3CDS	ENST00000402630	ENST00000325157		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
intron-intron	ENST00000402630	ENST00000490326		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	MKL1	chr22	40948110	-	ENTHD1	chr22	40161614	-
In-frame	ENST00000409839	ENST00000303037		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	REG3A	chr2	79384698	-	CTRB2	chr16	75238220	-
Frame-shit	ENST00000393878	ENST00000303037		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	REG3A	chr2	79384698	-	CTRB2	chr16	75238220	-
Frame-shit	ENST00000305165	ENST00000303037		TCGA	LD	PAAD	TCGA-IB-A6UG-01A	REG3A	chr2	79384698	-	CTRB2	chr16	75238220	-
In-frame	ENST00000367800	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000367800	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000367800	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000367800	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000367800	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000367800	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000367800	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000367800	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000367800	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000367800	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000457866	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000457866	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000457866	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000457866	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000457866	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000457866	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000457866	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000457866	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000457866	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000457866	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000417892	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000417892	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000417892	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000417892	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000417892	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
In-frame	ENST00000417892	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000417892	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000417892	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000417892	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000417892	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000327035	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000327035	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000327035	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000327035	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000327035	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000327035	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000327035	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000327035	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000327035	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
5CDS-intron	ENST00000327035	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000488690	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000488690	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000488690	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000488690	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000488690	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000488690	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000488690	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000488690	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000488690	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000488690	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000367798	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000367798	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000367798	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000367798	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000367798	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000367798	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000367798	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000367798	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000367798	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000367798	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000528103	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000528103	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000528103	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000528103	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000528103	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000528103	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000528103	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000528103	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000528103	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000528103	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000534469	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000534469	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000534469	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000534469	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000534469	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000534469	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000534469	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000534469	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000534469	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000534469	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000531527	ENST00000367837		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000531527	ENST00000527578		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000531527	ENST00000415177		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000531527	ENST00000367826		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000531527	ENST00000367824		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-3CDS	ENST00000531527	ENST00000445176		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000531527	ENST00000314674		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000531527	ENST00000367822		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000531527	ENST00000367820		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
intron-intron	ENST00000531527	ENST00000525067		TCGA	LD	PAAD	TCGA-IB-A7LX-01A	AHI1	chr6	135715914	-	HBS1L	chr6	135287611	-
Frame-shit	ENST00000369221	ENST00000308366		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PNLIP	chr10	118315630	+	PLA2G1B	chr12	120760120	-
In-frame	ENST00000369221	ENST00000423423		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PNLIP	chr10	118315630	+	PLA2G1B	chr12	120760120	-
Frame-shit	ENST00000369221	ENST00000549767		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PNLIP	chr10	118315630	+	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000470562	ENST00000308366		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PNLIP	chr10	118315630	+	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000470562	ENST00000423423		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PNLIP	chr10	118315630	+	PLA2G1B	chr12	120760120	-
intron-3CDS	ENST00000470562	ENST00000549767		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PNLIP	chr10	118315630	+	PLA2G1B	chr12	120760120	-
In-frame	ENST00000486171	ENST00000369221		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PRSS1	chr7	142457375	+	PNLIP	chr10	118314690	+
5CDS-intron	ENST00000486171	ENST00000470562		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PRSS1	chr7	142457375	+	PNLIP	chr10	118314690	+
In-frame	ENST00000311737	ENST00000369221		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PRSS1	chr7	142457375	+	PNLIP	chr10	118314690	+
5CDS-intron	ENST00000311737	ENST00000470562		TCGA	LD	PAAD	TCGA-IB-AAUM-01A	PRSS1	chr7	142457375	+	PNLIP	chr10	118314690	+
intron-5UTR	ENST00000354700	ENST00000379116		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-5UTR	ENST00000354700	ENST00000338555		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000354700	ENST00000325425		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000354700	ENST00000467651		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000354700	ENST00000400928		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-5UTR	ENST00000353662	ENST00000379116		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-5UTR	ENST00000353662	ENST00000338555		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000353662	ENST00000325425		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000353662	ENST00000467651		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000353662	ENST00000400928		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-5UTR	ENST00000379037	ENST00000379116		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-5UTR	ENST00000379037	ENST00000338555		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000379037	ENST00000325425		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000379037	ENST00000467651		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
intron-intron	ENST00000379037	ENST00000400928		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ACAP3	chr1	1229909	-	SCNN1D	chr1	1216005	+
5CDS-intron	ENST00000343245	ENST00000539449		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000343245	ENST00000369063		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000343245	ENST00000498091		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000369070	ENST00000539449		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000369070	ENST00000369063		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000369070	ENST00000498091		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000369076	ENST00000539449		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000369076	ENST00000369063		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5CDS-intron	ENST00000369076	ENST00000498091		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
3UTR-intron	ENST00000360666	ENST00000539449		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
3UTR-intron	ENST00000360666	ENST00000369063		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
3UTR-intron	ENST00000360666	ENST00000498091		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5UTR-intron	ENST00000475645	ENST00000539449		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5UTR-intron	ENST00000475645	ENST00000369063		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
5UTR-intron	ENST00000475645	ENST00000498091		TCGA	LD	PAAD	TCGA-IB-AAUQ-01A	ATG5	chr6	106649847	-	RTN4IP1	chr6	107040175	-
In-frame	ENST00000295640	ENST00000367287		TCGA	LD	PAAD	TCGA-IB-AAUR-01A	RNPEP	chr1	201952241	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000295640	ENST00000482943		TCGA	LD	PAAD	TCGA-IB-AAUR-01A	RNPEP	chr1	201952241	+	TIMM17A	chr1	201926639	+
In-frame	ENST00000367286	ENST00000367287		TCGA	LD	PAAD	TCGA-IB-AAUR-01A	RNPEP	chr1	201952241	+	TIMM17A	chr1	201926639	+
5CDS-intron	ENST00000367286	ENST00000482943		TCGA	LD	PAAD	TCGA-IB-AAUR-01A	RNPEP	chr1	201952241	+	TIMM17A	chr1	201926639	+
3UTR-3CDS	ENST00000471105	ENST00000367287		TCGA	LD	PAAD	TCGA-IB-AAUR-01A	RNPEP	chr1	201952241	+	TIMM17A	chr1	201926639	+
3UTR-intron	ENST00000471105	ENST00000482943		TCGA	LD	PAAD	TCGA-IB-AAUR-01A	RNPEP	chr1	201952241	+	TIMM17A	chr1	201926639	+
intron-3CDS	ENST00000377564	ENST00000377707		TCGA	LD	PAAD	TCGA-IB-AAUS-01A	CNTNAP3B	chr9	40582251	-	SHB	chr9	38016128	-
intron-3CDS	ENST00000377564	ENST00000377700		TCGA	LD	PAAD	TCGA-IB-AAUS-01A	CNTNAP3B	chr9	40582251	-	SHB	chr9	38016128	-
intron-3CDS	ENST00000276974	ENST00000377707		TCGA	LD	PAAD	TCGA-IB-AAUS-01A	CNTNAP3B	chr9	40582251	-	SHB	chr9	38016128	-
intron-3CDS	ENST00000276974	ENST00000377700		TCGA	LD	PAAD	TCGA-IB-AAUS-01A	CNTNAP3B	chr9	40582251	-	SHB	chr9	38016128	-
intron-3CDS	ENST00000467854	ENST00000377707		TCGA	LD	PAAD	TCGA-IB-AAUS-01A	CNTNAP3B	chr9	40582251	-	SHB	chr9	38016128	-
intron-3CDS	ENST00000467854	ENST00000377700		TCGA	LD	PAAD	TCGA-IB-AAUS-01A	CNTNAP3B	chr9	40582251	-	SHB	chr9	38016128	-
In-frame	ENST00000389677	ENST00000369162		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
5CDS-intron	ENST00000389677	ENST00000522650		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
5CDS-intron	ENST00000389677	ENST00000369143		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
5UTR-3CDS	ENST00000538471	ENST00000369162		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
5UTR-intron	ENST00000538471	ENST00000522650		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
5UTR-intron	ENST00000538471	ENST00000369143		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
intron-3CDS	ENST00000461803	ENST00000369162		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
intron-intron	ENST00000461803	ENST00000522650		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
intron-intron	ENST00000461803	ENST00000369143		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	FAXC	chr6	99790774	-	ASCC3	chr6	100960794	-
intron-intron	ENST00000407471	ENST00000407886		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000407471	ENST00000382744		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000407471	ENST00000423535		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000435822	ENST00000407886		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000435822	ENST00000382744		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000435822	ENST00000423535		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000490922	ENST00000407886		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000490922	ENST00000382744		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000490922	ENST00000423535		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
5CDS-intron	ENST00000404664	ENST00000407886		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
5CDS-intron	ENST00000404664	ENST00000382744		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
5CDS-intron	ENST00000404664	ENST00000423535		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000447813	ENST00000407886		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000447813	ENST00000382744		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000447813	ENST00000423535		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000402766	ENST00000407886		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000402766	ENST00000382744		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-intron	ENST00000402766	ENST00000423535		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	GUCD1	chr22	24951583	-	TMEM211	chr22	25335519	-
intron-3CDS	ENST00000355451	ENST00000290219		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	NUDCD3	chr7	44465499	-	IFNGR2	chr21	34809135	+
intron-3CDS	ENST00000355451	ENST00000381995		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	NUDCD3	chr7	44465499	-	IFNGR2	chr21	34809135	+
intron-3CDS	ENST00000355451	ENST00000405436		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	NUDCD3	chr7	44465499	-	IFNGR2	chr21	34809135	+
5UTR-3CDS	ENST00000460110	ENST00000290219		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	NUDCD3	chr7	44465499	-	IFNGR2	chr21	34809135	+
5UTR-3CDS	ENST00000460110	ENST00000381995		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	NUDCD3	chr7	44465499	-	IFNGR2	chr21	34809135	+
5UTR-3CDS	ENST00000460110	ENST00000405436		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	NUDCD3	chr7	44465499	-	IFNGR2	chr21	34809135	+
5CDS-5UTR	ENST00000301244	ENST00000523638		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000301244	ENST00000592282		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000301244	ENST00000588993		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000301244	ENST00000593142		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
intron-5UTR	ENST00000587090	ENST00000523638		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
intron-5UTR	ENST00000587090	ENST00000592282		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
intron-5UTR	ENST00000587090	ENST00000588993		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
intron-5UTR	ENST00000587090	ENST00000593142		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000454580	ENST00000523638		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000454580	ENST00000592282		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000454580	ENST00000588993		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
5CDS-5UTR	ENST00000454580	ENST00000593142		TCGA	LD	PAAD	TCGA-L1-A7W4-01A	SPINT2	chr19	38755638	+	ZNF260	chr19	37006601	-
Frame-shit	ENST00000298310	ENST00000261699		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000298310	ENST00000267436		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000298310	ENST00000421284		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000298310	ENST00000555423		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000298310	ENST00000555610		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000298310	ENST00000556393		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-3CDS	ENST00000382135	ENST00000261699		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000382135	ENST00000267436		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000382135	ENST00000421284		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000382135	ENST00000555423		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000382135	ENST00000555610		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000382135	ENST00000556393		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
Frame-shit	ENST00000545773	ENST00000261699		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000545773	ENST00000267436		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000545773	ENST00000421284		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000545773	ENST00000555423		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000545773	ENST00000555610		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000545773	ENST00000556393		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5UTR-3CDS	ENST00000556925	ENST00000261699		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5UTR-intron	ENST00000556925	ENST00000267436		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5UTR-intron	ENST00000556925	ENST00000421284		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5UTR-intron	ENST00000556925	ENST00000555423		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5UTR-intron	ENST00000556925	ENST00000555610		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5UTR-intron	ENST00000556925	ENST00000556393		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
Frame-shit	ENST00000546046	ENST00000261699		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000546046	ENST00000267436		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000546046	ENST00000421284		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000546046	ENST00000555423		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000546046	ENST00000555610		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
5CDS-intron	ENST00000546046	ENST00000556393		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-3CDS	ENST00000556672	ENST00000261699		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000556672	ENST00000267436		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000556672	ENST00000421284		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000556672	ENST00000555423		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000556672	ENST00000555610		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
intron-intron	ENST00000556672	ENST00000556393		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	NEMF	chr14	50292585	-	L2HGDH	chr14	50704443	-
Frame-shit	ENST00000543875	ENST00000416247		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	TMEM170B	chr6	11538607	+	SMIM13	chr6	11134636	+
Frame-shit	ENST00000379426	ENST00000416247		TCGA	LD	PAAD	TCGA-LB-A7SX-01A	TMEM170B	chr6	11538607	+	SMIM13	chr6	11134636	+
intron-3UTR	ENST00000303037	ENST00000381395		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-3UTR	ENST00000303037	ENST00000381406		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-3UTR	ENST00000303037	ENST00000416167		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-3UTR	ENST00000303037	ENST00000300632		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-intron	ENST00000303037	ENST00000434045		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-intron	ENST00000303037	ENST00000381392		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-intron	ENST00000303037	ENST00000381389		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-intron	ENST00000303037	ENST00000418738		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	CTRB2	chr16	75239671	-	IGF2	chr11	2151980	-
intron-3UTR	ENST00000305089	ENST00000381395		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-3UTR	ENST00000305089	ENST00000381406		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-3UTR	ENST00000305089	ENST00000416167		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-3UTR	ENST00000305089	ENST00000300632		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-intron	ENST00000305089	ENST00000434045		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-intron	ENST00000305089	ENST00000381392		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-intron	ENST00000305089	ENST00000381389		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
intron-intron	ENST00000305089	ENST00000418738		TCGA	LD	PAAD	TCGA-LB-A8F3-01A	REG1B	chr2	79312176	-	IGF2	chr11	2152897	-
Frame-shit	ENST00000392038	ENST00000038176		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
Frame-shit	ENST00000392038	ENST00000427130		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
5CDS-intron	ENST00000392038	ENST00000519858		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
Frame-shit	ENST00000424901	ENST00000038176		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
Frame-shit	ENST00000424901	ENST00000427130		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
5CDS-intron	ENST00000424901	ENST00000519858		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
Frame-shit	ENST00000311278	ENST00000038176		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
Frame-shit	ENST00000311278	ENST00000427130		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
5CDS-intron	ENST00000311278	ENST00000519858		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
In-frame	ENST00000579047	ENST00000038176		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
In-frame	ENST00000579047	ENST00000427130		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
5CDS-intron	ENST00000579047	ENST00000519858		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
intron-3CDS	ENST00000581582	ENST00000038176		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
intron-3CDS	ENST00000581582	ENST00000427130		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
intron-intron	ENST00000581582	ENST00000519858		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	AKT2	chr19	40741797	-	NSMAF	chr8	59508218	-
Frame-shit	ENST00000530047	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000530047	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
5CDS-intron	ENST00000530047	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000527078	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000527078	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
5CDS-intron	ENST00000527078	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000402965	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000402965	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
5CDS-intron	ENST00000402965	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000532887	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000532887	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
5CDS-intron	ENST00000532887	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000329994	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000329994	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
5CDS-intron	ENST00000329994	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
intron-3CDS	ENST00000526891	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
intron-3CDS	ENST00000526891	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
intron-intron	ENST00000526891	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
intron-3CDS	ENST00000540505	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
intron-3CDS	ENST00000540505	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
intron-intron	ENST00000540505	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000526752	ENST00000528838		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
Frame-shit	ENST00000526752	ENST00000400780		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
5CDS-intron	ENST00000526752	ENST00000528842		TCGA	LD	PAAD	TCGA-RB-AA9M-01A	SLC52A2	chr8	145583083	+	HSF1	chr8	145535191	+
In-frame	ENST00000205061	ENST00000219368		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	GLG1	chr16	74508444	-	FA2H	chr16	74748167	-
In-frame	ENST00000205061	ENST00000544337		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	GLG1	chr16	74508444	-	FA2H	chr16	74748167	-
In-frame	ENST00000422840	ENST00000219368		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	GLG1	chr16	74508444	-	FA2H	chr16	74748167	-
In-frame	ENST00000422840	ENST00000544337		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	GLG1	chr16	74508444	-	FA2H	chr16	74748167	-
In-frame	ENST00000447066	ENST00000219368		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	GLG1	chr16	74508444	-	FA2H	chr16	74748167	-
In-frame	ENST00000447066	ENST00000544337		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	GLG1	chr16	74508444	-	FA2H	chr16	74748167	-
intron-3CDS	ENST00000585748	ENST00000233997		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	STK11	chr19	1207202	+	AZU1	chr19	828230	+
Frame-shit	ENST00000326873	ENST00000233997		TCGA	LD	PAAD	TCGA-RL-AAAS-01A	STK11	chr19	1207202	+	AZU1	chr19	828230	+
5CDS-5UTR	ENST00000299240	ENST00000527185		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000299240	ENST00000528682		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000299240	ENST00000524871		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000299240	ENST00000418526		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000299240	ENST00000279463		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000299240	ENST00000524560		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000039989	ENST00000527185		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000039989	ENST00000528682		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000039989	ENST00000524871		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-5UTR	ENST00000039989	ENST00000418526		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000039989	ENST00000279463		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
5CDS-intron	ENST00000039989	ENST00000524560		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000526774	ENST00000527185		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000526774	ENST00000528682		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000526774	ENST00000524871		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000526774	ENST00000418526		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000526774	ENST00000279463		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000526774	ENST00000524560		TCGA	LD	PAAD	TCGA-S4-A8RO-01A	TTC17	chr11	43400872	+	CNTN5	chr11	99426876	+
In-frame	ENST00000596302	ENST00000391857		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5CDS-3UTR	ENST00000596302	ENST00000477613		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
In-frame	ENST00000392288	ENST00000391857		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5CDS-3UTR	ENST00000392288	ENST00000477613		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
In-frame	ENST00000594390	ENST00000391857		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5CDS-3UTR	ENST00000594390	ENST00000477613		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5UTR-3CDS	ENST00000355504	ENST00000391857		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5UTR-3UTR	ENST00000355504	ENST00000477613		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
In-frame	ENST00000339914	ENST00000391857		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5CDS-3UTR	ENST00000339914	ENST00000477613		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
Frame-shit	ENST00000599461	ENST00000391857		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5CDS-3UTR	ENST00000599461	ENST00000477613		TCGA	LD	PAAD	TCGA-US-A776-01A	ZNF493	chr19	21580069	+	RPL13A	chr19	49993107	+
5CDS-intron	ENST00000220592	ENST00000561978		TCGA	LD	PAAD	TCGA-US-A779-01A	AGO2	chr8	141545567	-	PCAT1	chr8	128018800	+
intron-intron	ENST00000519980	ENST00000561978		TCGA	LD	PAAD	TCGA-US-A779-01A	AGO2	chr8	141545567	-	PCAT1	chr8	128018800	+
intron-intron	ENST00000517293	ENST00000561978		TCGA	LD	PAAD	TCGA-US-A779-01A	AGO2	chr8	141545567	-	PCAT1	chr8	128018800	+
Frame-shit	ENST00000287394	ENST00000276692		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
Frame-shit	ENST00000287394	ENST00000519548		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
Frame-shit	ENST00000287394	ENST00000517678		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
5CDS-5UTR	ENST00000287394	ENST00000521546		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
5CDS-intron	ENST00000287394	ENST00000605953		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000521903	ENST00000276692		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000521903	ENST00000519548		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000521903	ENST00000517678		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-5UTR	ENST00000521903	ENST00000521546		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-intron	ENST00000521903	ENST00000605953		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000534257	ENST00000276692		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000534257	ENST00000519548		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-3CDS	ENST00000534257	ENST00000517678		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-5UTR	ENST00000534257	ENST00000521546		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
intron-intron	ENST00000534257	ENST00000605953		TCGA	LD	PAAD	TCGA-US-A779-01A	ATAD2	chr8	124408427	-	TATDN1	chr8	125507783	-
5UTR-3CDS	ENST00000378330	ENST00000562982		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000378330	ENST00000305904		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-intron	ENST00000378330	ENST00000568035		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-3UTR	ENST00000378330	ENST00000570222		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000301030	ENST00000562982		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000301030	ENST00000305904		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-intron	ENST00000301030	ENST00000568035		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
5UTR-3UTR	ENST00000301030	ENST00000570222		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-3CDS	ENST00000563291	ENST00000562982		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-3CDS	ENST00000563291	ENST00000305904		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-intron	ENST00000563291	ENST00000568035		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-3UTR	ENST00000563291	ENST00000570222		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-3CDS	ENST00000567736	ENST00000562982		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-3CDS	ENST00000567736	ENST00000305904		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-intron	ENST00000567736	ENST00000568035		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
intron-3UTR	ENST00000567736	ENST00000570222		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	ANKRD11	chr16	89556653	-	DYNLRB2	chr16	80583381	+
In-frame	ENST00000446488	ENST00000227348		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
5CDS-intron	ENST00000446488	ENST00000533709		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
In-frame	ENST00000304521	ENST00000227348		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
5CDS-intron	ENST00000304521	ENST00000533709		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
In-frame	ENST00000524794	ENST00000227348		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
5CDS-intron	ENST00000524794	ENST00000533709		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
Frame-shit	ENST00000524746	ENST00000227348		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
5CDS-intron	ENST00000524746	ENST00000533709		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
intron-3CDS	ENST00000526940	ENST00000227348		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
intron-intron	ENST00000526940	ENST00000533709		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	NFRKB	chr11	129746616	-	CRTAM	chr11	122720776	+
5UTR-3CDS	ENST00000393328	ENST00000430627		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000393328	ENST00000447079		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000393328	ENST00000559545		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000393331	ENST00000430627		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000393331	ENST00000447079		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000393331	ENST00000559545		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000347630	ENST00000430627		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000347630	ENST00000447079		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000347630	ENST00000559545		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000504102	ENST00000430627		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000504102	ENST00000447079		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000504102	ENST00000559545		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
intron-3CDS	ENST00000503676	ENST00000430627		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
intron-3CDS	ENST00000503676	ENST00000447079		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
intron-intron	ENST00000503676	ENST00000559545		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000513080	ENST00000430627		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000513080	ENST00000447079		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000513080	ENST00000559545		TCGA	LD	PAAD	TCGA-XD-AAUI-01A	SPOP	chr17	47755295	-	CDK12	chr17	37646810	+
5CDS-intron	ENST00000415083	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000415083	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000415083	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000542420	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000542420	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000542420	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000542743	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000542743	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000542743	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
intron-intron	ENST00000539849	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
intron-intron	ENST00000539849	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
intron-intron	ENST00000539849	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000269137	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000269137	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000269137	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000545952	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000545952	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000545952	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5UTR-intron	ENST00000585241	ENST00000269228		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5UTR-intron	ENST00000585241	ENST00000412552		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5UTR-intron	ENST00000585241	ENST00000540608		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	SS18	chr18	23658040	-	NPC1	chr18	21086606	-
5CDS-intron	ENST00000192788	ENST00000266000		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000374542		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000414083		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000477162		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000455860		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000436311		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000472399		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000399060		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000383062		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000461796		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000433482		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000445009		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000469277		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000399344		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000383194		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000494562		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000192788	ENST00000414388		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000266000		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000374542		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000414083		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000477162		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000455860		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000436311		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000472399		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000399060		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000383062		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000461796		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000433482		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000445009		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000469277		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000399344		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000383194		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000494562		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452449	ENST00000414388		TCGA	LD	PAAD	TCGA-XN-A8T3-01A	UHRF1BP1	chr6	34827348	+	DAXX	chr6	33291807	-
Frame-shit	ENST00000376177	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000376177	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000376177	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000376177	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
5CDS-intron	ENST00000376177	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000396172	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000396172	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000396172	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000396172	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
5CDS-intron	ENST00000396172	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000417556	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000417556	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000417556	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000417556	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
5CDS-intron	ENST00000417556	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000458640	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000458640	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000458640	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000458640	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
5CDS-intron	ENST00000458640	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000462421	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000462421	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000462421	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000462421	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000462421	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000415382	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000415382	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000415382	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000415382	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
5CDS-intron	ENST00000415382	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453105	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453105	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453105	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453105	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000453105	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000449074	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000449074	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000449074	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000449074	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000449074	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552820	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552820	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552820	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552820	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000552820	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000463430	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000463430	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000463430	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000463430	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000463430	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000438578	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000438578	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000438578	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000438578	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000438578	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000415689	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000415689	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000415689	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000415689	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000415689	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456476	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456476	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456476	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456476	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000456476	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412106	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412106	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412106	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412106	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000412106	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547039	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547039	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547039	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547039	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000547039	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550435	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550435	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550435	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550435	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000550435	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453488	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453488	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453488	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453488	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000453488	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453138	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453138	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453138	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000453138	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000453138	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552288	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552288	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552288	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000552288	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000552288	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000441425	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000441425	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000441425	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000441425	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000441425	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456666	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456666	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456666	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000456666	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000456666	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546633	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546633	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546633	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546633	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000546633	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000483957	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000483957	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000483957	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000483957	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000483957	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430703	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430703	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430703	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430703	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000430703	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000416863	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000416863	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000416863	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000416863	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000416863	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000413678	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000413678	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000413678	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000413678	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000413678	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000414440	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000414440	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000414440	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000414440	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000414440	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547489	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547489	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547489	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000547489	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000547489	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000551031	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000551031	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000551031	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000551031	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000551031	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000468089	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000468089	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000468089	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000468089	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000468089	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400293	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400293	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400293	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400293	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000400293	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400296	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400296	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400296	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400296	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000400296	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400295	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400295	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400295	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000400295	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000400295	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000383508	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000383508	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000383508	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000383508	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000383508	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548340	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548340	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548340	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548340	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000548340	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548331	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548331	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548331	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548331	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000548331	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000495391	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000495391	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000495391	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000495391	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000495391	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000446341	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000446341	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000446341	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000446341	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000446341	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548614	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548614	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548614	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000548614	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000548614	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000448296	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000448296	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000448296	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000448296	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000448296	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412330	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412330	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412330	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000412330	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000412330	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000445218	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000445218	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000445218	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000445218	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000445218	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546637	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546637	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546637	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000546637	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000546637	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000489325	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000489325	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000489325	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000489325	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000489325	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000450987	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000450987	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000450987	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000450987	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000450987	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000431360	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000431360	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000431360	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000431360	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000431360	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430784	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430784	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430784	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000430784	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000430784	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550217	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550217	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550217	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000550217	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000550217	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000470514	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000470514	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000470514	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000470514	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000470514	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000549374	ENST00000339796		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000549374	ENST00000373737		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000549374	ENST00000340181		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-3CDS	ENST00000549374	ENST00000373738		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
intron-intron	ENST00000549374	ENST00000538992		TCGA	LD	PAAD	TCGA-XN-A8T5-01A	DDX39B	chr6	31503144	-	ETV7	chr6	36353446	-
Frame-shit	ENST00000295851	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000295851	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000295851	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000295851	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000295851	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000261017	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000261017	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000261017	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000261017	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000261017	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000430418	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000430418	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000430418	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000430418	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000430418	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000424558	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000424558	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000424558	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000424558	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000424558	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000261016	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000261016	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000261016	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000261016	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000261016	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000422511	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000422511	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000422511	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000422511	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000422511	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430574	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430574	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430574	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000430574	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000430574	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000261018	ENST00000397901		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000261018	ENST00000253475		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000261018	ENST00000535997		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
In-frame	ENST00000261018	ENST00000550102		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000261018	ENST00000547614		TCGA	RV	PCPG	TCGA-S7-A7WO-01A	ABI2	chr2	204291992	+	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000589222	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000589222	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000589222	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-intron	ENST00000589222	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000407086	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000407086	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000407086	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-intron	ENST00000407086	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000390652	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000390652	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000390652	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-intron	ENST00000390652	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000408905	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000408905	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000408905	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-intron	ENST00000408905	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000588462	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000588462	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000588462	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-intron	ENST00000588462	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000585744	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000585744	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000585744	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-intron	ENST00000585744	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000588874	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000588874	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000588874	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-intron	ENST00000588874	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000585812	ENST00000257821		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000585812	ENST00000323180		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000585812	ENST00000418153		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
intron-intron	ENST00000585812	ENST00000527753		TCGA	RV	PCPG	TCGA-QR-A70G-01B	BCAS3	chr17	58761397	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000378961	ENST00000316403		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
5CDS-intron	ENST00000378961	ENST00000546343		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
5CDS-intron	ENST00000378961	ENST00000560366		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
5CDS-intron	ENST00000378961	ENST00000405140		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
5CDS-intron	ENST00000378961	ENST00000523500		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
intron-5UTR	ENST00000488832	ENST00000316403		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
intron-intron	ENST00000488832	ENST00000546343		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
intron-intron	ENST00000488832	ENST00000560366		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
intron-intron	ENST00000488832	ENST00000405140		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
intron-intron	ENST00000488832	ENST00000523500		TCGA	RV	PCPG	TCGA-QR-A700-01A	CHGB	chr20	5903719	+	CLU	chr8	27472215	-
Frame-shit	ENST00000378961	ENST00000513024		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000509638		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000508501		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000512946		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000313860		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000512632		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000512820		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000503057		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000511496		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000514096		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000509277		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000396595		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000381753		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000509454		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-intron	ENST00000378961	ENST00000515785		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-3CDS	ENST00000488832	ENST00000513024		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000509638		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000508501		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000512946		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000313860		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000512632		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000512820		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000503057		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000511496		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000514096		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000509277		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000396595		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000381753		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000509454		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
intron-intron	ENST00000488832	ENST00000515785		TCGA	RV	PCPG	TCGA-P8-A6RY-01A	CHGB	chr20	5903719	+	LIMCH1	chr4	41648502	+
5CDS-5UTR	ENST00000330386	ENST00000288699		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000330386	ENST00000401478		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000389561	ENST00000288699		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000389561	ENST00000401478		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000333577	ENST00000288699		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000333577	ENST00000401478		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000332482	ENST00000288699		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000332482	ENST00000401478		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000389562	ENST00000288699		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-5UTR	ENST00000389562	ENST00000401478		TCGA	RV	PCPG	TCGA-WB-A81W-01A	EP400	chr12	132479501	+	DPYSL5	chr2	27121364	+
5CDS-intron	ENST00000350221	ENST00000299092		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000350221	ENST00000561100		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000350221	ENST00000543580		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
5CDS-5UTR	ENST00000350221	ENST00000560729		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
intron-intron	ENST00000559692	ENST00000299092		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
intron-intron	ENST00000559692	ENST00000561100		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
intron-intron	ENST00000559692	ENST00000543580		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
intron-5UTR	ENST00000559692	ENST00000560729		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	FSIP1	chr15	39909936	-	GPR176	chr15	40099459	-
intron-3CDS	ENST00000260983	ENST00000306156		TCGA	RV	PCPG	TCGA-RW-A688-01A	HECW2	chr2	197458232	-	PRKCE	chr2	46070139	+
intron-3UTR	ENST00000260983	ENST00000467135		TCGA	RV	PCPG	TCGA-RW-A688-01A	HECW2	chr2	197458232	-	PRKCE	chr2	46070139	+
intron-intron	ENST00000260983	ENST00000394874		TCGA	RV	PCPG	TCGA-RW-A688-01A	HECW2	chr2	197458232	-	PRKCE	chr2	46070139	+
intron-3CDS	ENST00000409111	ENST00000306156		TCGA	RV	PCPG	TCGA-RW-A688-01A	HECW2	chr2	197458232	-	PRKCE	chr2	46070139	+
intron-3UTR	ENST00000409111	ENST00000467135		TCGA	RV	PCPG	TCGA-RW-A688-01A	HECW2	chr2	197458232	-	PRKCE	chr2	46070139	+
intron-intron	ENST00000409111	ENST00000394874		TCGA	RV	PCPG	TCGA-RW-A688-01A	HECW2	chr2	197458232	-	PRKCE	chr2	46070139	+
In-frame	ENST00000081029	ENST00000477717		TCGA	RV	PCPG	TCGA-QR-A6H4-01A	MRPS35	chr12	27877119	+	ST6GALNAC5	chr1	77509889	+
5CDS-intron	ENST00000081029	ENST00000496845		TCGA	RV	PCPG	TCGA-QR-A6H4-01A	MRPS35	chr12	27877119	+	ST6GALNAC5	chr1	77509889	+
In-frame	ENST00000538315	ENST00000477717		TCGA	RV	PCPG	TCGA-QR-A6H4-01A	MRPS35	chr12	27877119	+	ST6GALNAC5	chr1	77509889	+
5CDS-intron	ENST00000538315	ENST00000496845		TCGA	RV	PCPG	TCGA-QR-A6H4-01A	MRPS35	chr12	27877119	+	ST6GALNAC5	chr1	77509889	+
Frame-shit	ENST00000545128	ENST00000400337		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000545128	ENST00000355480		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000545128	ENST00000359759		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
5CDS-intron	ENST00000545128	ENST00000459895		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000376767	ENST00000400337		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000376767	ENST00000355480		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000376767	ENST00000359759		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
5CDS-intron	ENST00000376767	ENST00000459895		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000376752	ENST00000400337		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000376752	ENST00000355480		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000376752	ENST00000359759		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
5CDS-intron	ENST00000376752	ENST00000459895		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	PCSK5	chr9	78547399	+	COL18A1	chr21	46888156	+
Frame-shit	ENST00000338368	ENST00000285381		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	PRKDC	chr8	48769717	-	CA3	chr8	86351941	+
Frame-shit	ENST00000314191	ENST00000285381		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	PRKDC	chr8	48769717	-	CA3	chr8	86351941	+
5UTR-3CDS	ENST00000523565	ENST00000285381		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	PRKDC	chr8	48769717	-	CA3	chr8	86351941	+
Frame-shit	ENST00000358024	ENST00000540320		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000358024	ENST00000400445		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000358024	ENST00000310336		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000358024	ENST00000379939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
5CDS-intron	ENST00000358024	ENST00000537702		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
5CDS-intron	ENST00000358024	ENST00000379922		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
5CDS-intron	ENST00000358024	ENST00000461581		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000545499	ENST00000540320		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000545499	ENST00000400445		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000545499	ENST00000310336		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000545499	ENST00000379939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
5CDS-intron	ENST00000545499	ENST00000537702		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
5CDS-intron	ENST00000545499	ENST00000379922		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
5CDS-intron	ENST00000545499	ENST00000461581		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-3CDS	ENST00000495538	ENST00000540320		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-3CDS	ENST00000495538	ENST00000400445		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-3CDS	ENST00000495538	ENST00000310336		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-3CDS	ENST00000495538	ENST00000379939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-intron	ENST00000495538	ENST00000537702		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-intron	ENST00000495538	ENST00000379922		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
3UTR-intron	ENST00000495538	ENST00000461581		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000330675	ENST00000540320		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000330675	ENST00000400445		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000330675	ENST00000310336		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000330675	ENST00000379939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-intron	ENST00000330675	ENST00000537702		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-intron	ENST00000330675	ENST00000379922		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-intron	ENST00000330675	ENST00000461581		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000329800	ENST00000540320		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000329800	ENST00000400445		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000329800	ENST00000310336		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-3CDS	ENST00000329800	ENST00000379939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-intron	ENST00000329800	ENST00000537702		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-intron	ENST00000329800	ENST00000379922		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
intron-intron	ENST00000329800	ENST00000461581		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TMCC2	chr1	205211172	+	NBEA	chr13	35864526	+
Frame-shit	ENST00000258796	ENST00000330579		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000258796	ENST00000535343		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000258796	ENST00000538784		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000407643	ENST00000330579		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000407643	ENST00000535343		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000407643	ENST00000538784		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000403167	ENST00000330579		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000403167	ENST00000535343		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000403167	ENST00000538784		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000477439	ENST00000330579		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000477439	ENST00000535343		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000477439	ENST00000538784		TCGA	RV	PCPG	TCGA-S7-A7WW-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000607874	ENST00000425117		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
intron-3CDS	ENST00000607874	ENST00000394422		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
intron-5UTR	ENST00000607874	ENST00000371051		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
intron-intron	ENST00000607874	ENST00000371042		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
intron-intron	ENST00000607874	ENST00000498179		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000218147	ENST00000425117		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000218147	ENST00000394422		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-5UTR	ENST00000218147	ENST00000371051		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000218147	ENST00000371042		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000218147	ENST00000498179		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000359304	ENST00000425117		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000359304	ENST00000394422		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-5UTR	ENST00000359304	ENST00000371051		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000359304	ENST00000371042		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000359304	ENST00000498179		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000303743	ENST00000425117		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000303743	ENST00000394422		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-5UTR	ENST00000303743	ENST00000371051		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000303743	ENST00000371042		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000303743	ENST00000498179		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000540052	ENST00000425117		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
Frame-shit	ENST00000540052	ENST00000394422		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-5UTR	ENST00000540052	ENST00000371051		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000540052	ENST00000371042		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
5CDS-intron	ENST00000540052	ENST00000498179		TCGA	RV	PCPG	TCGA-WB-A820-01A	BCORL1	chrX	129173257	+	UTP14A	chrX	129041343	+
In-frame	ENST00000335762	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000335762	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399655	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399655	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000480911	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000480911	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399644	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399644	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000344100	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000344100	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399638	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399638	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399629	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399629	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399597	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399597	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000327702	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000327702	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399621	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399621	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399649	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399649	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399637	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399637	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000402845	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000402845	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399591	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399591	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399641	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399641	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000347598	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000347598	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399606	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399606	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399595	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399595	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399601	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399601	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399603	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399603	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399634	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399634	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000399617	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000399617	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
In-frame	ENST00000406454	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
5CDS-intron	ENST00000406454	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
intron-3CDS	ENST00000491104	ENST00000262971		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
intron-intron	ENST00000491104	ENST00000596144		TCGA	RV	PCPG	TCGA-RW-A68B-01A	CACNA1C	chr12	2162777	+	PIAS4	chr19	4033098	+
Frame-shit	ENST00000263083	ENST00000254719		TCGA	RV	PCPG	TCGA-RW-A681-01A	DPH1	chr17	1933524	+	RPA1	chr17	1746097	+
5CDS-intron	ENST00000263083	ENST00000573924		TCGA	RV	PCPG	TCGA-RW-A681-01A	DPH1	chr17	1933524	+	RPA1	chr17	1746097	+
intron-3CDS	ENST00000570477	ENST00000254719		TCGA	RV	PCPG	TCGA-RW-A681-01A	DPH1	chr17	1933524	+	RPA1	chr17	1746097	+
intron-intron	ENST00000570477	ENST00000573924		TCGA	RV	PCPG	TCGA-RW-A681-01A	DPH1	chr17	1933524	+	RPA1	chr17	1746097	+
intron-3CDS	ENST00000576891	ENST00000254719		TCGA	RV	PCPG	TCGA-RW-A681-01A	DPH1	chr17	1933524	+	RPA1	chr17	1746097	+
intron-intron	ENST00000576891	ENST00000573924		TCGA	RV	PCPG	TCGA-RW-A681-01A	DPH1	chr17	1933524	+	RPA1	chr17	1746097	+
5CDS-intron	ENST00000398016	ENST00000398840		TCGA	RV	PCPG	TCGA-WB-A81W-01A	GRIP1	chr12	66932858	-	NR2E3	chr15	72099357	+
5CDS-intron	ENST00000359742	ENST00000398840		TCGA	RV	PCPG	TCGA-WB-A81W-01A	GRIP1	chr12	66932858	-	NR2E3	chr15	72099357	+
5CDS-intron	ENST00000286445	ENST00000398840		TCGA	RV	PCPG	TCGA-WB-A81W-01A	GRIP1	chr12	66932858	-	NR2E3	chr15	72099357	+
intron-intron	ENST00000542021	ENST00000398840		TCGA	RV	PCPG	TCGA-WB-A81W-01A	GRIP1	chr12	66932858	-	NR2E3	chr15	72099357	+
In-frame	ENST00000217246	ENST00000399002		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
In-frame	ENST00000217246	ENST00000378194		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
5CDS-intron	ENST00000217246	ENST00000476791		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
In-frame	ENST00000310348	ENST00000399002		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
In-frame	ENST00000310348	ENST00000378194		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
5CDS-intron	ENST00000310348	ENST00000476791		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000464883	ENST00000399002		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000464883	ENST00000378194		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-intron	ENST00000464883	ENST00000476791		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000402914	ENST00000399002		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000402914	ENST00000378194		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-intron	ENST00000402914	ENST00000476791		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000378058	ENST00000399002		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000378058	ENST00000378194		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-intron	ENST00000378058	ENST00000476791		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000407045	ENST00000399002		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-3CDS	ENST00000407045	ENST00000378194		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
intron-intron	ENST00000407045	ENST00000476791		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	MACROD2	chr20	14474154	+	SPTLC3	chr20	13071731	+
In-frame	ENST00000509479	ENST00000434000		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
In-frame	ENST00000509479	ENST00000591680		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000509479	ENST00000586265		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000509479	ENST00000592154		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000509479	ENST00000588554		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
In-frame	ENST00000327122	ENST00000434000		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
In-frame	ENST00000327122	ENST00000591680		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000327122	ENST00000586265		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000327122	ENST00000592154		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5CDS-intron	ENST00000327122	ENST00000588554		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
intron-3CDS	ENST00000398940	ENST00000434000		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
intron-3CDS	ENST00000398940	ENST00000591680		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
intron-intron	ENST00000398940	ENST00000586265		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
intron-intron	ENST00000398940	ENST00000592154		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
intron-intron	ENST00000398940	ENST00000588554		TCGA	RV	PCPG	TCGA-QR-A70H-01A	MAML3	chr4	140810511	-	GPATCH8	chr17	42483419	-
5UTR-3CDS	ENST00000391875	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3UTR	ENST00000391875	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
Frame-shit	ENST00000281701	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5CDS-3UTR	ENST00000281701	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
Frame-shit	ENST00000469075	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5CDS-3UTR	ENST00000469075	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3CDS	ENST00000482491	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3UTR	ENST00000482491	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3CDS	ENST00000340871	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3UTR	ENST00000340871	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3CDS	ENST00000361463	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3UTR	ENST00000361463	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3CDS	ENST00000468673	ENST00000373640		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
5UTR-3UTR	ENST00000468673	ENST00000477463		TCGA	RV	PCPG	TCGA-WB-A81J-01A	NVL	chr1	224517773	-	C2orf72	chr2	231906011	+
intron-3CDS	ENST00000305409	ENST00000540753		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	SCG2	chr2	224463684	-	PTGS1	chr9	125140178	+
intron-3CDS	ENST00000305409	ENST00000223423		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	SCG2	chr2	224463684	-	PTGS1	chr9	125140178	+
intron-3CDS	ENST00000305409	ENST00000362012		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	SCG2	chr2	224463684	-	PTGS1	chr9	125140178	+
intron-5UTR	ENST00000305409	ENST00000373698		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	SCG2	chr2	224463684	-	PTGS1	chr9	125140178	+
Frame-shit	ENST00000265631	ENST00000373277		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000265631	ENST00000373274		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000265631	ENST00000420366		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000265631	ENST00000429553		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000265631	ENST00000373276		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000265631	ENST00000314830		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
5CDS-intron	ENST00000265631	ENST00000471939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000416240	ENST00000373277		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000416240	ENST00000373274		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000416240	ENST00000420366		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000416240	ENST00000429553		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000416240	ENST00000373276		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
Frame-shit	ENST00000416240	ENST00000314830		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
5CDS-intron	ENST00000416240	ENST00000471939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
In-frame	ENST00000542654	ENST00000373277		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
In-frame	ENST00000542654	ENST00000373274		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
In-frame	ENST00000542654	ENST00000420366		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
In-frame	ENST00000542654	ENST00000429553		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
In-frame	ENST00000542654	ENST00000373276		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
In-frame	ENST00000542654	ENST00000314830		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
5CDS-intron	ENST00000542654	ENST00000471939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-3CDS	ENST00000494085	ENST00000373277		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-3CDS	ENST00000494085	ENST00000373274		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-3CDS	ENST00000494085	ENST00000420366		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-3CDS	ENST00000494085	ENST00000429553		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-3CDS	ENST00000494085	ENST00000373276		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-3CDS	ENST00000494085	ENST00000314830		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
intron-intron	ENST00000494085	ENST00000471939		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	SLC25A13	chr7	95813589	-	SH2D3C	chr9	130504238	-
5CDS-intron	ENST00000374232	ENST00000337530		TCGA	RV	PCPG	TCGA-QR-A70I-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000374244		TCGA	RV	PCPG	TCGA-QR-A70I-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000536272		TCGA	RV	PCPG	TCGA-QR-A70I-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000337530		TCGA	RV	PCPG	TCGA-QR-A70I-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000374244		TCGA	RV	PCPG	TCGA-QR-A70I-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000536272		TCGA	RV	PCPG	TCGA-QR-A70I-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
Frame-shit	ENST00000392793	ENST00000345097		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
In-frame	ENST00000392793	ENST00000261302		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
In-frame	ENST00000392793	ENST00000557258		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
Frame-shit	ENST00000392793	ENST00000555353		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
5CDS-intron	ENST00000392793	ENST00000555658		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
Frame-shit	ENST00000264037	ENST00000345097		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
In-frame	ENST00000264037	ENST00000261302		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
In-frame	ENST00000264037	ENST00000557258		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
Frame-shit	ENST00000264037	ENST00000555353		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
5CDS-intron	ENST00000264037	ENST00000555658		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
intron-3CDS	ENST00000478058	ENST00000345097		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
intron-3CDS	ENST00000478058	ENST00000261302		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
intron-3CDS	ENST00000478058	ENST00000557258		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
intron-3CDS	ENST00000478058	ENST00000555353		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
intron-intron	ENST00000478058	ENST00000555658		TCGA	RV	PCPG	TCGA-RW-A688-01A	TECTA	chr11	121000920	+	FOXN3	chr14	89629313	-
In-frame	ENST00000274456	ENST00000311085		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
In-frame	ENST00000274456	ENST00000539542		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
5CDS-intron	ENST00000274456	ENST00000505312		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000513374	ENST00000311085		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000513374	ENST00000539542		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-intron	ENST00000513374	ENST00000505312		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000504771	ENST00000311085		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000504771	ENST00000539542		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-intron	ENST00000504771	ENST00000505312		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000503646	ENST00000311085		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000503646	ENST00000539542		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-intron	ENST00000503646	ENST00000505312		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000504642	ENST00000311085		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000504642	ENST00000539542		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-intron	ENST00000504642	ENST00000505312		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000415806	ENST00000311085		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-3CDS	ENST00000415806	ENST00000539542		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
intron-intron	ENST00000415806	ENST00000505312		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TNFAIP8	chr5	118604602	+	DMXL1	chr5	118464906	+
5UTR-3CDS	ENST00000370794	ENST00000430627		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000370794	ENST00000447079		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-intron	ENST00000370794	ENST00000559545		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
intron-3CDS	ENST00000357428	ENST00000430627		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
intron-3CDS	ENST00000357428	ENST00000447079		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
intron-intron	ENST00000357428	ENST00000559545		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000370793	ENST00000430627		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000370793	ENST00000447079		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-intron	ENST00000370793	ENST00000559545		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000370792	ENST00000430627		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000370792	ENST00000447079		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-intron	ENST00000370792	ENST00000559545		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000528150	ENST00000430627		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-3CDS	ENST00000528150	ENST00000447079		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5UTR-intron	ENST00000528150	ENST00000559545		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627132	+
5CDS-5UTR	ENST00000406606	ENST00000303407		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-intron	ENST00000406606	ENST00000473349		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000406606	ENST00000371834		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000406606	ENST00000357885		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000371850	ENST00000303407		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-intron	ENST00000371850	ENST00000473349		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000371850	ENST00000371834		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000371850	ENST00000357885		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000371851	ENST00000303407		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-intron	ENST00000371851	ENST00000473349		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000371851	ENST00000371834		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5CDS-5UTR	ENST00000371851	ENST00000357885		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5UTR-5UTR	ENST00000486113	ENST00000303407		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5UTR-intron	ENST00000486113	ENST00000473349		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5UTR-5UTR	ENST00000486113	ENST00000371834		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
5UTR-5UTR	ENST00000486113	ENST00000357885		TCGA	RV	PCPG	TCGA-QT-A5XM-01A	VAV2	chr9	136857197	-	BRD3	chr9	136918712	-
intron-3CDS	ENST00000373458	ENST00000361383		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3CDS	ENST00000373458	ENST00000405275		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3CDS	ENST00000373458	ENST00000373473		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3UTR	ENST00000373458	ENST00000473857		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3UTR	ENST00000373458	ENST00000373469		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
Frame-shit	ENST00000373461	ENST00000361383		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
Frame-shit	ENST00000373461	ENST00000405275		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
Frame-shit	ENST00000373461	ENST00000373473		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
5CDS-3UTR	ENST00000373461	ENST00000473857		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
5CDS-3UTR	ENST00000373461	ENST00000373469		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3CDS	ENST00000373459	ENST00000361383		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3CDS	ENST00000373459	ENST00000405275		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3CDS	ENST00000373459	ENST00000373473		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3UTR	ENST00000373459	ENST00000473857		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
intron-3UTR	ENST00000373459	ENST00000373469		TCGA	RV	PCPG	TCGA-QR-A70A-01A	VSTM2L	chr20	36561991	+	CTNNBL1	chr20	36468504	+
Frame-shit	ENST00000397843	ENST00000328965		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000397843	ENST00000531220		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000397843	ENST00000534735		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
Frame-shit	ENST00000356641	ENST00000328965		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000356641	ENST00000531220		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
5CDS-intron	ENST00000356641	ENST00000534735		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
intron-3CDS	ENST00000532993	ENST00000328965		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
intron-intron	ENST00000532993	ENST00000531220		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
intron-intron	ENST00000532993	ENST00000534735		TCGA	RV	PCPG	TCGA-QR-A6GR-01A	ARHGEF12	chr11	120207984	+	OAF	chr11	120096370	+
Frame-shit	ENST00000533608	ENST00000302708		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000533608	ENST00000378840		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000533608	ENST00000532410		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000358681	ENST00000302708		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000358681	ENST00000378840		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000358681	ENST00000532410		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000395673	ENST00000302708		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000395673	ENST00000378840		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000395673	ENST00000532410		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000343631	ENST00000302708		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000343631	ENST00000378840		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000343631	ENST00000532410		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
intron-3CDS	ENST00000529186	ENST00000302708		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
intron-intron	ENST00000529186	ENST00000378840		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
intron-3UTR	ENST00000529186	ENST00000532410		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	EXT2	chr11	44219568	+	ALKBH3	chr11	43940588	+
In-frame	ENST00000490337	ENST00000273286		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000490337	ENST00000493075		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
In-frame	ENST00000389636	ENST00000273286		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000389636	ENST00000493075		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
In-frame	ENST00000471742	ENST00000273286		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000471742	ENST00000493075		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
In-frame	ENST00000302490	ENST00000273286		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000302490	ENST00000493075		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
In-frame	ENST00000389634	ENST00000273286		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
5CDS-5UTR	ENST00000389634	ENST00000493075		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
3UTR-3CDS	ENST00000497291	ENST00000273286		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
3UTR-5UTR	ENST00000497291	ENST00000493075		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54959242	-
In-frame	ENST00000509479	ENST00000394126		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000509479	ENST00000356271		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000509479	ENST00000394128		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000509479	ENST00000394127		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
5CDS-intron	ENST00000509479	ENST00000501516		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
5CDS-5UTR	ENST00000509479	ENST00000479829		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000327122	ENST00000394126		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000327122	ENST00000356271		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000327122	ENST00000394128		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000327122	ENST00000394127		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-intron	ENST00000327122	ENST00000501516		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000327122	ENST00000479829		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-3CDS	ENST00000398940	ENST00000394126		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000398940	ENST00000356271		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000398940	ENST00000394128		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000398940	ENST00000394127		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-intron	ENST00000398940	ENST00000501516		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
intron-5UTR	ENST00000398940	ENST00000479829		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209888	-
In-frame	ENST00000359015	ENST00000522532		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
5CDS-intron	ENST00000359015	ENST00000276689		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
5CDS-intron	ENST00000359015	ENST00000518008		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
5CDS-intron	ENST00000359015	ENST00000517367		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
5CDS-intron	ENST00000359015	ENST00000517830		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-3CDS	ENST00000355845	ENST00000522532		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000355845	ENST00000276689		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000355845	ENST00000518008		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000355845	ENST00000517367		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000355845	ENST00000517830		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-3CDS	ENST00000463140	ENST00000522532		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000463140	ENST00000276689		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000463140	ENST00000518008		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000463140	ENST00000517367		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
intron-intron	ENST00000463140	ENST00000517830		TCGA	RV	PCPG	TCGA-RW-A686-01A	MAP3K5	chr6	137112848	-	NDUFB9	chr8	125579888	+
In-frame	ENST00000257821	ENST00000393892		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000257821	ENST00000472031		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000257821	ENST00000591072		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-3UTR	ENST00000257821	ENST00000592446		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-5UTR	ENST00000257821	ENST00000393888		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
In-frame	ENST00000323180	ENST00000393892		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000323180	ENST00000472031		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000323180	ENST00000591072		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-3UTR	ENST00000323180	ENST00000592446		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-5UTR	ENST00000323180	ENST00000393888		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
In-frame	ENST00000418153	ENST00000393892		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000418153	ENST00000472031		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000418153	ENST00000591072		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-3UTR	ENST00000418153	ENST00000592446		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-5UTR	ENST00000418153	ENST00000393888		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
intron-3CDS	ENST00000527753	ENST00000393892		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
intron-intron	ENST00000527753	ENST00000472031		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
intron-intron	ENST00000527753	ENST00000591072		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
intron-3UTR	ENST00000527753	ENST00000592446		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
intron-5UTR	ENST00000527753	ENST00000393888		TCGA	RV	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	CNP	chr17	40120086	+
5CDS-intron	ENST00000262435	ENST00000462175		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SMURF2	chr17	62582204	-	TEKT3	chr17	15234931	-
5CDS-5UTR	ENST00000262435	ENST00000395930		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SMURF2	chr17	62582204	-	TEKT3	chr17	15234931	-
5CDS-5UTR	ENST00000262435	ENST00000338696		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SMURF2	chr17	62582204	-	TEKT3	chr17	15234931	-
intron-intron	ENST00000578200	ENST00000462175		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SMURF2	chr17	62582204	-	TEKT3	chr17	15234931	-
intron-5UTR	ENST00000578200	ENST00000395930		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SMURF2	chr17	62582204	-	TEKT3	chr17	15234931	-
intron-5UTR	ENST00000578200	ENST00000338696		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SMURF2	chr17	62582204	-	TEKT3	chr17	15234931	-
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A686-06A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000356093	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000356093	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000356093	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000356093	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000398863	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000398863	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000398863	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000398863	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000343067	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000343067	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000343067	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000343067	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000349460	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000349460	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000349460	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000349460	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000373800	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000373800	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000373800	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000373800	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000347529	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000347529	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000347529	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000347529	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
5UTR-3CDS	ENST00000373798	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
5UTR-3CDS	ENST00000373798	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
5UTR-5UTR	ENST00000373798	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
5UTR-3UTR	ENST00000373798	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000373797	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000373797	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000373797	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000373797	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000460378	ENST00000542507		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000460378	ENST00000373812		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000460378	ENST00000541996		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000460378	ENST00000478283		TCGA	RV	PCPG	TCGA-QR-A70V-01A	EPB41	chr1	29220349	+	YTHDF2	chr1	29068915	+
Frame-shit	ENST00000376705	ENST00000369905		TCGA	RV	PCPG	TCGA-SP-A6QF-01A	HS6ST3	chr13	96743823	+	ACTR1A	chr10	104241655	-
5CDS-5UTR	ENST00000376705	ENST00000470322		TCGA	RV	PCPG	TCGA-SP-A6QF-01A	HS6ST3	chr13	96743823	+	ACTR1A	chr10	104241655	-
5CDS-intron	ENST00000376705	ENST00000487599		TCGA	RV	PCPG	TCGA-SP-A6QF-01A	HS6ST3	chr13	96743823	+	ACTR1A	chr10	104241655	-
5CDS-intron	ENST00000376705	ENST00000545684		TCGA	RV	PCPG	TCGA-SP-A6QF-01A	HS6ST3	chr13	96743823	+	ACTR1A	chr10	104241655	-
5CDS-intron	ENST00000376705	ENST00000446605		TCGA	RV	PCPG	TCGA-SP-A6QF-01A	HS6ST3	chr13	96743823	+	ACTR1A	chr10	104241655	-
In-frame	ENST00000404771	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404771	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404771	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404771	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000404771	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372440	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372440	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372440	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372440	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000372440	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372443	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372443	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372443	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000372443	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000372443	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286628	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286628	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286628	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286628	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000286628	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286627	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286627	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286627	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000286627	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000286627	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000354353	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000354353	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000354353	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000354353	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000354353	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404857	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404857	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404857	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000404857	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000404857	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000406533	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000406533	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000406533	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
In-frame	ENST00000406533	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
5CDS-5UTR	ENST00000406533	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000484507	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000484507	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000484507	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000484507	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-5UTR	ENST00000484507	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000481070	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000481070	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000481070	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000481070	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-5UTR	ENST00000481070	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000480683	ENST00000372583		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000480683	ENST00000372584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000480683	ENST00000247584		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-3CDS	ENST00000480683	ENST00000429157		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
intron-5UTR	ENST00000480683	ENST00000460604		TCGA	RV	PCPG	TCGA-RW-A688-01A	KCNMA1	chr10	78943179	-	HIVEP3	chr1	41984159	-
Frame-shit	ENST00000354452	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000354452	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000354452	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000356073	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000356073	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000356073	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000568673	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000568673	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000568673	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000457482	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000457482	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000457482	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000543082	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000543082	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000543082	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000540999	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000540999	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000540999	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000537578	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000537578	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000537578	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000564999	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000564999	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000564999	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000568740	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000568740	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000568740	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000537856	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000537856	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000537856	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000544241	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000544241	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000544241	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000561992	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000561992	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000561992	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000561831	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000561831	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000561831	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000565018	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000565018	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000565018	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000570287	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000570287	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000570287	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000564228	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000564228	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000564228	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000567880	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000567880	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000567880	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000566286	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000566286	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000566286	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000566279	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000566279	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000566279	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000564403	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000564403	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000564403	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000398339	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000398339	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000398339	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000570177	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000570177	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000570177	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000563760	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000563760	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000563760	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80Y-01A	TCF4	chr18	52921728	-	MAML3	chr4	140812121	-
5CDS-5UTR	ENST00000572681	ENST00000341267		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-5UTR	ENST00000572681	ENST00000331224		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-intron	ENST00000572681	ENST00000556051		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
intron-5UTR	ENST00000575839	ENST00000341267		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
intron-5UTR	ENST00000575839	ENST00000331224		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
intron-intron	ENST00000575839	ENST00000556051		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-5UTR	ENST00000160740	ENST00000341267		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-5UTR	ENST00000160740	ENST00000331224		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-intron	ENST00000160740	ENST00000556051		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-5UTR	ENST00000575354	ENST00000341267		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-5UTR	ENST00000575354	ENST00000331224		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
5CDS-intron	ENST00000575354	ENST00000556051		TCGA	RV	PCPG	TCGA-QR-A70P-01A	CIC	chr19	42798456	+	DLK1	chr14	101193333	+
Frame-shit	ENST00000294053	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000294053	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000294053	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000294053	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000294053	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000294053	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000294053	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000294053	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000294053	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000538039	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000538039	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000538039	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000437826	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000437826	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000437826	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000340729	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000340729	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000340729	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000543042	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000543042	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000543042	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000445069	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000445069	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000445069	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000538021	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000538021	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000538021	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000466387		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000496558		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000361291		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000402739		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000540488		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000541047		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000542555	ENST00000343114		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000542555	ENST00000496251		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000542555	ENST00000409266		TCGA	RV	PCPG	TCGA-WB-A81R-01A	CLPB	chr11	72091325	-	CTNNA2	chr2	80620336	+
5UTR-3CDS	ENST00000360909	ENST00000376705		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97484744	+
5UTR-3CDS	ENST00000351081	ENST00000376705		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97484744	+
intron-3CDS	ENST00000395125	ENST00000376705		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97484744	+
5UTR-3CDS	ENST00000556135	ENST00000376705		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97484744	+
intron-3CDS	ENST00000553966	ENST00000376705		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97484744	+
intron-3CDS	ENST00000342350	ENST00000388820		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
intron-5UTR	ENST00000342350	ENST00000566303		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
5UTR-3CDS	ENST00000588499	ENST00000388820		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
5UTR-5UTR	ENST00000588499	ENST00000566303		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
5UTR-3CDS	ENST00000588295	ENST00000388820		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
5UTR-5UTR	ENST00000588295	ENST00000566303		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
intron-3CDS	ENST00000310604	ENST00000388820		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
intron-5UTR	ENST00000310604	ENST00000566303		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
intron-3CDS	ENST00000452796	ENST00000388820		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
intron-5UTR	ENST00000452796	ENST00000566303		TCGA	RV	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43128921	-	ADAMTS7	chr15	79083565	-
In-frame	ENST00000404039	ENST00000371818		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
In-frame	ENST00000404039	ENST00000371811		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
intron-3CDS	ENST00000406326	ENST00000371818		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
intron-3CDS	ENST00000406326	ENST00000371811		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
In-frame	ENST00000377770	ENST00000371818		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
In-frame	ENST00000377770	ENST00000371811		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
In-frame	ENST00000332007	ENST00000371818		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
In-frame	ENST00000332007	ENST00000371811		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
intron-3CDS	ENST00000496611	ENST00000371818		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
intron-3CDS	ENST00000496611	ENST00000371811		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
intron-3CDS	ENST00000427557	ENST00000371818		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
intron-3CDS	ENST00000427557	ENST00000371811		TCGA	RV	PCPG	TCGA-QR-A70V-01A	DPP6	chr7	154461151	+	IFIT3	chr10	91098418	+
Frame-shit	ENST00000254624	ENST00000361112		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000254624	ENST00000260908		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000254624	ENST00000449046		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000334503	ENST00000361112		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000334503	ENST00000260908		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000334503	ENST00000449046		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000519656	ENST00000361112		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000519656	ENST00000260908		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000519656	ENST00000449046		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
intron-3CDS	ENST00000521940	ENST00000361112		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
intron-3CDS	ENST00000521940	ENST00000260908		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
intron-3CDS	ENST00000521940	ENST00000449046		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33807214	-
Frame-shit	ENST00000318522	ENST00000294964		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000318522	ENST00000480099		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
Frame-shit	ENST00000402711	ENST00000294964		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000402711	ENST00000480099		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
3UTR-3CDS	ENST00000482660	ENST00000294964		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
3UTR-intron	ENST00000482660	ENST00000480099		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
Frame-shit	ENST00000401738	ENST00000294964		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000401738	ENST00000480099		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
intron-3CDS	ENST00000453191	ENST00000294964		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
intron-intron	ENST00000453191	ENST00000480099		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	EML4	chr2	42396776	+	PKDCC	chr2	42280379	+
5UTR-3CDS	ENST00000492622	ENST00000298858		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000520328		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000256324		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000521077		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000518665		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000518868		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000519019		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000492622	ENST00000523816		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000492622	ENST00000525393		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000492622	ENST00000428926		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000492622	ENST00000522322		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000492622	ENST00000523771		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000492622	ENST00000412671		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000492622	ENST00000517877		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
5UTR-intron	ENST00000492622	ENST00000523576		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000298858		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000520328		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000256324		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000521077		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000518665		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000518868		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000519019		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000541916	ENST00000523816		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000541916	ENST00000525393		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000541916	ENST00000428926		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000541916	ENST00000522322		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000541916	ENST00000523771		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000541916	ENST00000412671		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000541916	ENST00000517877		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-intron	ENST00000541916	ENST00000523576		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000298858		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000520328		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000256324		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000521077		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000518665		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000518868		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000519019		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000523816		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000525393		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000428926		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000522322		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000523771		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000412671		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000517877		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
intron-intron	ENST00000398316	ENST00000523576		TCGA	RV	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49550313	+	C14orf159	chr14	91633569	+
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	PCPG	TCGA-QR-A6GZ-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	PCPG	TCGA-QR-A6GZ-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
5CDS-5UTR	ENST00000421743	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000421743	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000421743	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000367909	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000367909	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000367909	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000531057	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000531057	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000531057	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
intron-5UTR	ENST00000527809	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
intron-5UTR	ENST00000527809	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
intron-5UTR	ENST00000527809	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000367908	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000367908	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
5CDS-5UTR	ENST00000367908	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
3UTR-5UTR	ENST00000491263	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
3UTR-5UTR	ENST00000491263	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
3UTR-5UTR	ENST00000491263	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
intron-5UTR	ENST00000367906	ENST00000324015		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
intron-5UTR	ENST00000367906	ENST00000450523		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
intron-5UTR	ENST00000367906	ENST00000382061		TCGA	RV	PCPG	TCGA-WB-A81S-01A	RGS4	chr1	163039318	+	SERPINF2	chr17	1648286	+
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-QR-A70H-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-5UTR	ENST00000278359	ENST00000339556		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000392622		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000392623		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000440685		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000368699		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000491177		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000339556		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000392622		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000392623		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000440685		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000368699		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000491177		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000339556		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000392622		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000392623		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000440685		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000368699		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000491177		TCGA	RV	PCPG	TCGA-RW-A686-01A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
In-frame	ENST00000318003	ENST00000311275		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000360911		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000458360		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000262975		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000471951		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000352431		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000396281		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000446994		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000536340		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000355972		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000540497		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000461685		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000318003	ENST00000372023		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
5CDS-5UTR	ENST00000318003	ENST00000468376		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000311275		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000360911		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000458360		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000262975		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000471951		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000352431		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000396281		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000446994		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000536340		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000355972		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000540497		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000461685		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
In-frame	ENST00000589606	ENST00000372023		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
5CDS-5UTR	ENST00000589606	ENST00000468376		TCGA	RV	PCPG	TCGA-WB-A818-01A	CC2D1A	chr19	14030015	+	ZMYND8	chr20	45938948	-
Frame-shit	ENST00000264235	ENST00000427277		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
Frame-shit	ENST00000264235	ENST00000297954		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000264235	ENST00000395475		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000264235	ENST00000356055		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000264235	ENST00000349097		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000264235	ENST00000395477		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-intron	ENST00000264235	ENST00000471076		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
Frame-shit	ENST00000316626	ENST00000427277		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
Frame-shit	ENST00000316626	ENST00000297954		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000316626	ENST00000395475		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000316626	ENST00000356055		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000316626	ENST00000349097		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-3UTR	ENST00000316626	ENST00000395477		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
5CDS-intron	ENST00000316626	ENST00000471076		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-3CDS	ENST00000473886	ENST00000427277		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-3CDS	ENST00000473886	ENST00000297954		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-3UTR	ENST00000473886	ENST00000395475		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-3UTR	ENST00000473886	ENST00000356055		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-3UTR	ENST00000473886	ENST00000349097		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-3UTR	ENST00000473886	ENST00000395477		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
intron-intron	ENST00000473886	ENST00000471076		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GSK3B	chr3	119812194	-	WNK2	chr9	96070610	+
In-frame	ENST00000524717	ENST00000358791		TCGA	RV	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000524717	ENST00000262591		TCGA	RV	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000524717	ENST00000371608		TCGA	RV	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000524717	ENST00000609336		TCGA	RV	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49493023	+
5CDS-intron	ENST00000524717	ENST00000485049		TCGA	RV	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49493023	+
In-frame	ENST00000307142	ENST00000388822		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000307142	ENST00000506780		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000448416	ENST00000388822		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000448416	ENST00000506780		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000429713	ENST00000388822		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000429713	ENST00000506780		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000434046	ENST00000388822		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
In-frame	ENST00000434046	ENST00000506780		TCGA	RV	PCPG	TCGA-QR-A707-01A	SYNPO2	chr4	119810296	+	METTL14	chr4	119621705	+
intron-3CDS	ENST00000358465	ENST00000368445		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000358465	ENST00000368449		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000358465	ENST00000448116		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000358465	ENST00000368450		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000358465	ENST00000368453		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000358465	ENST00000606391		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000358465	ENST00000490667		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-3CDS	ENST00000369543	ENST00000368445		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000369543	ENST00000368449		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000369543	ENST00000448116		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000369543	ENST00000368450		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000369543	ENST00000368453		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000369543	ENST00000606391		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000369543	ENST00000490667		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
Frame-shit	ENST00000450349	ENST00000368445		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000450349	ENST00000368449		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000450349	ENST00000448116		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000450349	ENST00000368450		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000450349	ENST00000368453		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000450349	ENST00000606391		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000450349	ENST00000490667		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-3CDS	ENST00000476908	ENST00000368445		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000476908	ENST00000368449		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000476908	ENST00000448116		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000476908	ENST00000368450		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000476908	ENST00000368453		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000476908	ENST00000606391		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
intron-intron	ENST00000476908	ENST00000490667		TCGA	RV	PCPG	TCGA-QR-A70X-01A	TRIM33	chr1	114963002	-	SHC1	chr1	154942675	-
5CDS-3UTR	ENST00000447632	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000447632	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000447632	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000447632	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000447632	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000413473	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000413473	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000413473	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000413473	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000413473	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262675	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262675	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262675	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262675	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000262675	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000451380	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000451380	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000451380	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000451380	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000451380	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371750	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371750	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371750	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371750	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000371750	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371747	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371747	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371747	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000371747	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000371747	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262676	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262676	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262676	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-3UTR	ENST00000262676	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
5CDS-intron	ENST00000262676	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000530004	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000530004	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000530004	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000530004	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-intron	ENST00000530004	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000534098	ENST00000474476		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000534098	ENST00000371218		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000534098	ENST00000303721		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-3UTR	ENST00000534098	ENST00000371212		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
intron-intron	ENST00000534098	ENST00000371210		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	TTC39A	chr1	51787393	-	FGGY	chr1	59977983	+
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000372009	ENST00000358603		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
5CDS-intron	ENST00000372009	ENST00000371226		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
5CDS-intron	ENST00000372009	ENST00000467063		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
5CDS-intron	ENST00000361297	ENST00000358603		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
5CDS-intron	ENST00000361297	ENST00000371226		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
5CDS-intron	ENST00000361297	ENST00000467063		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
intron-intron	ENST00000477968	ENST00000358603		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
intron-intron	ENST00000477968	ENST00000371226		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
intron-intron	ENST00000477968	ENST00000467063		TCGA	RV	PCPG	TCGA-QR-A6H2-01A	MAST2	chr1	46425149	+	OMA1	chr1	58946846	-
5CDS-5UTR	ENST00000370812	ENST00000454498		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000370812	ENST00000332246		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000370812	ENST00000311540		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000370812	ENST00000522854		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000370812	ENST00000544602		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-intron	ENST00000370812	ENST00000518542		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000445065	ENST00000454498		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000445065	ENST00000332246		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000445065	ENST00000311540		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000445065	ENST00000522854		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000445065	ENST00000544602		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-intron	ENST00000445065	ENST00000518542		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000370813	ENST00000454498		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000370813	ENST00000332246		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000370813	ENST00000311540		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000370813	ENST00000522854		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000370813	ENST00000544602		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-intron	ENST00000370813	ENST00000518542		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000359130	ENST00000454498		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000359130	ENST00000332246		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000359130	ENST00000311540		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000359130	ENST00000522854		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-5UTR	ENST00000359130	ENST00000544602		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
5CDS-intron	ENST00000359130	ENST00000518542		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000478391	ENST00000454498		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000478391	ENST00000332246		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000478391	ENST00000311540		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000478391	ENST00000522854		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-5UTR	ENST00000478391	ENST00000544602		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
intron-intron	ENST00000478391	ENST00000518542		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	PIGK	chr1	77672325	-	CSGALNACT1	chr8	19363641	-
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-P8-A5KC-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-5UTR	ENST00000356175	ENST00000478654		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000460911		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000350995		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000320356		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000541220		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000476773		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000483967		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000356175	ENST00000536783		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000478654		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000460911		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000350995		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000320356		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000541220		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000476773		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000483967		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-5UTR	ENST00000358273	ENST00000536783		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000478654		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000460911		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000350995		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000320356		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000541220		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000476773		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000483967		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000431387	ENST00000536783		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000478654		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000460911		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000350995		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000320356		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000541220		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000476773		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000483967		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000581113	ENST00000536783		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000478654		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000460911		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000350995		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000320356		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000541220		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000476773		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000483967		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000417592	ENST00000536783		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000478654		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000460911		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000350995		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000320356		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000541220		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000476773		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000483967		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
intron-5UTR	ENST00000444181	ENST00000536783		TCGA	RV	PCPG	TCGA-WB-A820-01A	NF1	chr17	29592357	+	EZH2	chr7	148544397	-
5CDS-intron	ENST00000314922	ENST00000270189		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000314922	ENST00000429089		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000314922	ENST00000220809		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000314922	ENST00000352041		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000314922	ENST00000519510		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000314922	ENST00000429710		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000314922	ENST00000524009		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000270189		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000429089		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000220809		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000352041		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000519510		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000429710		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000451791	ENST00000524009		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000270189		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000429089		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000220809		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000352041		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000519510		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000429710		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523274	ENST00000524009		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000270189		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000429089		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000220809		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000352041		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000519510		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000429710		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000523051	ENST00000524009		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000270189		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000429089		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000220809		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000352041		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000519510		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000429710		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
intron-intron	ENST00000518770	ENST00000524009		TCGA	RV	PCPG	TCGA-WB-A819-01A	PENK	chr8	57353513	-	PLAT	chr8	42051245	-
Frame-shit	ENST00000338086	ENST00000536774		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000338086	ENST00000327441		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000338086	ENST00000539062		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000338086	ENST00000556451		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000338086	ENST00000396294		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000338086	ENST00000545536		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000338086	ENST00000537471		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
5CDS-intron	ENST00000338086	ENST00000539174		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000536774		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000327441		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000539062		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000556451		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000396294		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000545536		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000319801	ENST00000537471		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
5CDS-intron	ENST00000319801	ENST00000539174		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000536774		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000327441		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000539062		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000556451		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000396294		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000545536		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000361078	ENST00000537471		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
5CDS-intron	ENST00000361078	ENST00000539174		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000536774		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000327441		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000539062		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000556451		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000396294		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000545536		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000536417	ENST00000537471		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
5CDS-intron	ENST00000536417	ENST00000539174		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000536774		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000327441		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000539062		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000556451		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000396294		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000545536		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000403432	ENST00000537471		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
5CDS-intron	ENST00000403432	ENST00000539174		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000536774		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000327441		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000539062		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000556451		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000396294		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000545536		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000420234	ENST00000537471		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
intron-intron	ENST00000420234	ENST00000539174		TCGA	RV	PCPG	TCGA-QT-A5XP-01A	PUM2	chr2	20507739	-	MIPOL1	chr14	37969113	+
In-frame	ENST00000318003	ENST00000254323		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	CC2D1A	chr19	14038078	+	ZSWIM4	chr19	13939459	+
In-frame	ENST00000318003	ENST00000440752		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	CC2D1A	chr19	14038078	+	ZSWIM4	chr19	13939459	+
In-frame	ENST00000589606	ENST00000254323		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	CC2D1A	chr19	14038078	+	ZSWIM4	chr19	13939459	+
In-frame	ENST00000589606	ENST00000440752		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	CC2D1A	chr19	14038078	+	ZSWIM4	chr19	13939459	+
Frame-shit	ENST00000378961	ENST00000381395		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381406		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000416167		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000300632		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000434045		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381392		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381389		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000418738		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381395		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381406		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000416167		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000300632		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000434045		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381392		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381389		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000418738		TCGA	RV	PCPG	TCGA-QR-A6GW-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
In-frame	ENST00000428826	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
In-frame	ENST00000428826	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
In-frame	ENST00000428826	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000415827	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000415827	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000415827	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000435174	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000435174	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000435174	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000592743	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000592743	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000592743	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
In-frame	ENST00000585893	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
In-frame	ENST00000585893	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
In-frame	ENST00000585893	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000590078	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000590078	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000590078	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000590783	ENST00000369037		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000590783	ENST00000453874		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
intron-3CDS	ENST00000590783	ENST00000369031		TCGA	RV	PCPG	TCGA-WB-A81F-01A	EZH1	chr17	40879653	-	PDSS2	chr6	107595431	-
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	PCPG	TCGA-QR-A6GZ-05A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	PCPG	TCGA-QR-A6GZ-05A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000426959	ENST00000557636		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000426959	ENST00000286650		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000426959	ENST00000298832		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000426959	ENST00000556893		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000426959	ENST00000554510		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000426959	ENST00000556977		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-3UTR	ENST00000426959	ENST00000555422		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
Frame-shit	ENST00000373930	ENST00000557636		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000373930	ENST00000286650		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000373930	ENST00000298832		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000373930	ENST00000556893		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000373930	ENST00000554510		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-intron	ENST00000373930	ENST00000556977		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
5CDS-3UTR	ENST00000373930	ENST00000555422		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	MEGF9	chr9	123476036	-	TTLL5	chr14	76230958	+
In-frame	ENST00000262915	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000262915	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372375	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372375	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000351035	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000351035	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372374	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372374	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000353126	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000353126	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000545417	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000545417	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000330208	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000330208	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000335430	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000335430	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372377	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372377	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000361392	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000361392	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000361400	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000361400	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000347631	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000347631	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000361812	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000361812	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372362	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372362	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000531451	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000531451	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372366	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372366	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372365	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372365	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372368	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372368	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000332628	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000332628	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372372	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372372	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000531816	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000531816	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000528371	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000528371	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372369	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372369	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000531993	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000531993	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000361746	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000361746	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000533933	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000533933	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
In-frame	ENST00000372367	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
5CDS-intron	ENST00000372367	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
intron-3CDS	ENST00000461375	ENST00000223145		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
intron-intron	ENST00000461375	ENST00000474269		TCGA	RV	PCPG	TCGA-WB-A81P-01A	ST3GAL3	chr1	44202051	+	GLCCI1	chr7	8124527	+
Frame-shit	ENST00000319394	ENST00000370256		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000319394	ENST00000260506		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000319394	ENST00000271234		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000319394	ENST00000604705		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000319394	ENST00000370253		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000361771	ENST00000370256		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000361771	ENST00000260506		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000361771	ENST00000271234		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000361771	ENST00000604705		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000361771	ENST00000370253		TCGA	RV	PCPG	TCGA-S7-A7WT-01A	WDTC1	chr1	27614352	+	FNBP1L	chr1	94000262	+
Frame-shit	ENST00000378961	ENST00000381395		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381406		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000416167		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000300632		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000434045		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381392		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381389		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000418738		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381395		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381406		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000416167		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000300632		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000434045		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381392		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381389		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000418738		TCGA	RV	PCPG	TCGA-S7-A7X2-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
In-frame	ENST00000367265	ENST00000272117		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
In-frame	ENST00000367265	ENST00000429204		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
5CDS-intron	ENST00000367265	ENST00000366784		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
In-frame	ENST00000367264	ENST00000272117		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
In-frame	ENST00000367264	ENST00000429204		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
5CDS-intron	ENST00000367264	ENST00000366784		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
intron-3CDS	ENST00000456180	ENST00000272117		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
intron-3CDS	ENST00000456180	ENST00000429204		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
intron-intron	ENST00000456180	ENST00000366784		TCGA	RV	PCPG	TCGA-WB-A81J-01A	KDM5B	chr1	202742246	-	ITPKB	chr1	226836472	-
Frame-shit	ENST00000233146	ENST00000506729		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000233146	ENST00000379807		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000233146	ENST00000389019		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000233146	ENST00000513675		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000233146	ENST00000379810		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
5CDS-intron	ENST00000233146	ENST00000514551		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000543555	ENST00000506729		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000543555	ENST00000379807		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000543555	ENST00000389019		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000543555	ENST00000513675		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000543555	ENST00000379810		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
5CDS-intron	ENST00000543555	ENST00000514551		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000406134	ENST00000506729		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000406134	ENST00000379807		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000406134	ENST00000389019		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000406134	ENST00000513675		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000406134	ENST00000379810		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
5CDS-intron	ENST00000406134	ENST00000514551		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000461394	ENST00000506729		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000461394	ENST00000379807		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000461394	ENST00000389019		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000461394	ENST00000513675		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
intron-3CDS	ENST00000461394	ENST00000379810		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
intron-intron	ENST00000461394	ENST00000514551		TCGA	RV	PCPG	TCGA-WB-A81D-01A	MSH2	chr2	47672796	+	SLCO6A1	chr5	101709198	-
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-RW-A8AZ-01A	UBTF	chr17	42287492	-	MAML3	chr4	140812121	-
In-frame	ENST00000394919	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000394919	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000394919	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000394919	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000342444	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000342444	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000342444	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000342444	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000317168	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000317168	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000317168	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000317168	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000545550	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000545550	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000545550	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000545550	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000317126	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000317126	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000317126	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000317126	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000394915	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000394915	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000394915	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
In-frame	ENST00000394915	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
intron-3CDS	ENST00000492502	ENST00000394903		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
intron-3CDS	ENST00000492502	ENST00000338820		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
intron-3CDS	ENST00000492502	ENST00000444643		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
intron-3CDS	ENST00000492502	ENST00000461919		TCGA	RV	PCPG	TCGA-S7-A7WL-01A	ASCC1	chr10	73912627	-	DNAJB12	chr10	74095689	-
Frame-shit	ENST00000299300	ENST00000546373		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
Frame-shit	ENST00000299300	ENST00000551568		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
Frame-shit	ENST00000299300	ENST00000338356		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000299300	ENST00000549691		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
Frame-shit	ENST00000544368	ENST00000546373		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
Frame-shit	ENST00000544368	ENST00000551568		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
Frame-shit	ENST00000544368	ENST00000338356		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000544368	ENST00000549691		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000543146	ENST00000546373		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000543146	ENST00000551568		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000543146	ENST00000338356		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
intron-intron	ENST00000543146	ENST00000549691		TCGA	RV	PCPG	TCGA-PR-A5PF-01A	CCT2	chr12	69979304	+	CPM	chr12	69252851	-
Frame-shit	ENST00000378961	ENST00000381395		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381406		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000416167		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000300632		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000434045		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381392		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000381389		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
Frame-shit	ENST00000378961	ENST00000418738		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381395		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381406		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000416167		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000300632		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000434045		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381392		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000381389		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000488832	ENST00000418738		TCGA	RV	PCPG	TCGA-WB-A819-01A	CHGB	chr20	5903719	+	IGF2	chr11	2154895	-
intron-3CDS	ENST00000306503	ENST00000338316		TCGA	RV	PCPG	TCGA-W2-A7HC-01A	SOCS5	chr2	46926588	+	ADCY2	chr5	7520851	+
intron-intron	ENST00000306503	ENST00000537121		TCGA	RV	PCPG	TCGA-W2-A7HC-01A	SOCS5	chr2	46926588	+	ADCY2	chr5	7520851	+
intron-intron	ENST00000306503	ENST00000513693		TCGA	RV	PCPG	TCGA-W2-A7HC-01A	SOCS5	chr2	46926588	+	ADCY2	chr5	7520851	+
5UTR-3CDS	ENST00000394861	ENST00000338316		TCGA	RV	PCPG	TCGA-W2-A7HC-01A	SOCS5	chr2	46926588	+	ADCY2	chr5	7520851	+
5UTR-intron	ENST00000394861	ENST00000537121		TCGA	RV	PCPG	TCGA-W2-A7HC-01A	SOCS5	chr2	46926588	+	ADCY2	chr5	7520851	+
5UTR-intron	ENST00000394861	ENST00000513693		TCGA	RV	PCPG	TCGA-W2-A7HC-01A	SOCS5	chr2	46926588	+	ADCY2	chr5	7520851	+
In-frame	ENST00000537971	ENST00000452533		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000537971	ENST00000553257		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000537971	ENST00000549701		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000537971	ENST00000358214		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000537971	ENST00000548671		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000537971	ENST00000266481		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000537971	ENST00000547312		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000537971	ENST00000414834		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000537971	ENST00000381000		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000011898	ENST00000452533		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000011898	ENST00000553257		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000011898	ENST00000549701		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000011898	ENST00000358214		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000011898	ENST00000548671		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000011898	ENST00000266481		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000011898	ENST00000547312		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000011898	ENST00000414834		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000011898	ENST00000381000		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000407263	ENST00000452533		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000407263	ENST00000553257		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000407263	ENST00000549701		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000407263	ENST00000358214		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000407263	ENST00000548671		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000407263	ENST00000266481		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-3UTR	ENST00000407263	ENST00000547312		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000407263	ENST00000414834		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
5CDS-5UTR	ENST00000407263	ENST00000381000		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000492305	ENST00000452533		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000492305	ENST00000553257		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000492305	ENST00000549701		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3CDS	ENST00000492305	ENST00000358214		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3UTR	ENST00000492305	ENST00000548671		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3UTR	ENST00000492305	ENST00000266481		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-3UTR	ENST00000492305	ENST00000547312		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-5UTR	ENST00000492305	ENST00000414834		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
intron-5UTR	ENST00000492305	ENST00000381000		TCGA	RV	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	DNM1L	chr12	32854349	+
In-frame	ENST00000256496	ENST00000468888		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
In-frame	ENST00000256496	ENST00000399362		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000539981		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000359576		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-5UTR	ENST00000256496	ENST00000307312		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000480013		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000461133		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000313350		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000487200		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000333778		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000256496	ENST00000482896		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
In-frame	ENST00000419534	ENST00000468888		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
In-frame	ENST00000419534	ENST00000399362		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000539981		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000359576		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-5UTR	ENST00000419534	ENST00000307312		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000480013		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000461133		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000313350		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000487200		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000333778		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
5CDS-intron	ENST00000419534	ENST00000482896		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-3CDS	ENST00000468010	ENST00000468888		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-3CDS	ENST00000468010	ENST00000399362		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000539981		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000359576		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-5UTR	ENST00000468010	ENST00000307312		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000480013		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000461133		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000313350		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000487200		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000333778		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
intron-intron	ENST00000468010	ENST00000482896		TCGA	RV	PCPG	TCGA-W2-A7HB-01A	ARL8B	chr3	5164273	+	CLASP2	chr3	33738425	-
Frame-shit	ENST00000313949	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000313949	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000313949	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000313949	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-3CDS	ENST00000371098	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371098	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371098	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371098	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
Frame-shit	ENST00000371075	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371075	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371075	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371075	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000371100	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371100	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371100	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371100	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-3CDS	ENST00000371099	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371099	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371099	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371099	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000371102	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371102	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371102	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371102	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
Frame-shit	ENST00000464624	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000464624	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000464624	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000464624	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-3CDS	ENST00000306120	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000306120	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000306120	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000306120	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000371095	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371095	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371095	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371095	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000371085	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371085	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371085	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000371085	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000354359	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000354359	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000354359	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000354359	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000265620	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000265620	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000265620	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000265620	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
In-frame	ENST00000306090	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000306090	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000306090	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-intron	ENST00000306090	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-3CDS	ENST00000371081	ENST00000258526		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371081	ENST00000547057		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371081	ENST00000551495		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
intron-intron	ENST00000371081	ENST00000545312		TCGA	RV	PCPG	TCGA-RW-A686-06A	GNAS	chr20	57486241	+	PLXNC1	chr12	94642003	+
5CDS-5UTR	ENST00000380738	ENST00000407597		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380738	ENST00000424279		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380738	ENST00000536365		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380738	ENST00000380961		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380738	ENST00000217964		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380738	ENST00000497555		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380733	ENST00000407597		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380733	ENST00000424279		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380733	ENST00000536365		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380733	ENST00000380961		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380733	ENST00000217964		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380733	ENST00000497555		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380715	ENST00000407597		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380715	ENST00000424279		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380715	ENST00000536365		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380715	ENST00000380961		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380715	ENST00000217964		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380715	ENST00000497555		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380716	ENST00000407597		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380716	ENST00000424279		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380716	ENST00000536365		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380716	ENST00000380961		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000380716	ENST00000217964		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000380716	ENST00000497555		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000397519	ENST00000407597		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000397519	ENST00000424279		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000397519	ENST00000536365		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000397519	ENST00000380961		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-5UTR	ENST00000397519	ENST00000217964		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
5CDS-intron	ENST00000397519	ENST00000497555		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
intron-5UTR	ENST00000484265	ENST00000407597		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
intron-intron	ENST00000484265	ENST00000424279		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
intron-5UTR	ENST00000484265	ENST00000536365		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
intron-intron	ENST00000484265	ENST00000380961		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
intron-5UTR	ENST00000484265	ENST00000217964		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
intron-intron	ENST00000484265	ENST00000497555		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	PSIP1	chr9	15486004	-	TBL1X	chrX	9621585	+
Frame-shit	ENST00000409402	ENST00000327283		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
Frame-shit	ENST00000409402	ENST00000591115		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000409402	ENST00000353319		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000409402	ENST00000309660		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000409402	ENST00000589086		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000409402	ENST00000591497		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
Frame-shit	ENST00000410092	ENST00000327283		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
Frame-shit	ENST00000410092	ENST00000591115		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000410092	ENST00000353319		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000410092	ENST00000309660		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000410092	ENST00000589086		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000410092	ENST00000591497		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
In-frame	ENST00000309836	ENST00000327283		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
In-frame	ENST00000309836	ENST00000591115		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000309836	ENST00000353319		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000309836	ENST00000309660		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000309836	ENST00000589086		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000309836	ENST00000591497		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
In-frame	ENST00000453447	ENST00000327283		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
In-frame	ENST00000453447	ENST00000591115		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000453447	ENST00000353319		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000453447	ENST00000309660		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000453447	ENST00000589086		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000453447	ENST00000591497		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
Frame-shit	ENST00000383356	ENST00000327283		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
Frame-shit	ENST00000383356	ENST00000591115		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000383356	ENST00000353319		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000383356	ENST00000309660		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000383356	ENST00000589086		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5CDS-intron	ENST00000383356	ENST00000591497		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5UTR-3CDS	ENST00000464481	ENST00000327283		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5UTR-3CDS	ENST00000464481	ENST00000591115		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5UTR-intron	ENST00000464481	ENST00000353319		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5UTR-intron	ENST00000464481	ENST00000309660		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5UTR-intron	ENST00000464481	ENST00000589086		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
5UTR-intron	ENST00000464481	ENST00000591497		TCGA	RV	PCPG	TCGA-RW-A67Y-01A	SPIRE1	chr18	12493071	-	PTPN2	chr18	12794484	-
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-PR-A5PH-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000349938	ENST00000295702		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
Frame-shit	ENST00000349938	ENST00000529008		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
5CDS-intron	ENST00000349938	ENST00000496742		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
5CDS-intron	ENST00000349938	ENST00000480567		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
3UTR-3CDS	ENST00000483477	ENST00000295702		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
3UTR-3CDS	ENST00000483477	ENST00000529008		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
3UTR-intron	ENST00000483477	ENST00000496742		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
3UTR-intron	ENST00000483477	ENST00000480567		TCGA	RV	PCPG	TCGA-WB-A81J-01A	ARMC9	chr2	232160966	+	SSR2	chr1	155988159	-
5UTR-3CDS	ENST00000367268	ENST00000367265		TCGA	RV	PCPG	TCGA-TT-A6YJ-01A	SYT2	chr1	202679386	-	KDM5B	chr1	202701067	-
5UTR-3CDS	ENST00000367268	ENST00000367264		TCGA	RV	PCPG	TCGA-TT-A6YJ-01A	SYT2	chr1	202679386	-	KDM5B	chr1	202701067	-
5UTR-intron	ENST00000367268	ENST00000456180		TCGA	RV	PCPG	TCGA-TT-A6YJ-01A	SYT2	chr1	202679386	-	KDM5B	chr1	202701067	-
intron-3CDS	ENST00000367267	ENST00000367265		TCGA	RV	PCPG	TCGA-TT-A6YJ-01A	SYT2	chr1	202679386	-	KDM5B	chr1	202701067	-
intron-3CDS	ENST00000367267	ENST00000367264		TCGA	RV	PCPG	TCGA-TT-A6YJ-01A	SYT2	chr1	202679386	-	KDM5B	chr1	202701067	-
intron-intron	ENST00000367267	ENST00000456180		TCGA	RV	PCPG	TCGA-TT-A6YJ-01A	SYT2	chr1	202679386	-	KDM5B	chr1	202701067	-
5UTR-3CDS	ENST00000361786	ENST00000172229		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	KIAA1737	chr14	77564704	+	NGFR	chr17	47579425	+
5UTR-5UTR	ENST00000361786	ENST00000504201		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	KIAA1737	chr14	77564704	+	NGFR	chr17	47579425	+
5UTR-3CDS	ENST00000555437	ENST00000172229		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	KIAA1737	chr14	77564704	+	NGFR	chr17	47579425	+
5UTR-5UTR	ENST00000555437	ENST00000504201		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	KIAA1737	chr14	77564704	+	NGFR	chr17	47579425	+
5UTR-3CDS	ENST00000555611	ENST00000172229		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	KIAA1737	chr14	77564704	+	NGFR	chr17	47579425	+
5UTR-5UTR	ENST00000555611	ENST00000504201		TCGA	RV	PCPG	TCGA-QT-A5XN-01A	KIAA1737	chr14	77564704	+	NGFR	chr17	47579425	+
5CDS-5UTR	ENST00000278359	ENST00000339556		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000392622		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000392623		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000440685		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000368699		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000278359	ENST00000491177		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000339556		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000392622		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000392623		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000440685		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000368699		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5CDS-5UTR	ENST00000395787	ENST00000491177		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000339556		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000392622		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000392623		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000440685		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000368699		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
5UTR-5UTR	ENST00000527830	ENST00000491177		TCGA	RV	PCPG	TCGA-RW-A686-06A	APIP	chr11	34937775	-	S100A13	chr1	153599009	-
Frame-shit	ENST00000255559	ENST00000401766		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
Frame-shit	ENST00000255559	ENST00000261707		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
intron-3CDS	ENST00000542342	ENST00000401766		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
intron-3CDS	ENST00000542342	ENST00000261707		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
intron-3CDS	ENST00000579988	ENST00000401766		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
intron-3CDS	ENST00000579988	ENST00000261707		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
Frame-shit	ENST00000579732	ENST00000401766		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
Frame-shit	ENST00000579732	ENST00000261707		TCGA	RV	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	SLC6A4	chr17	28538442	-
Frame-shit	ENST00000366610	ENST00000376741		TCGA	RV	PCPG	TCGA-QR-A708-01A	IRF2BP2	chr1	234744241	-	SP2	chr17	46002285	+
intron-3CDS	ENST00000366609	ENST00000376741		TCGA	RV	PCPG	TCGA-QR-A708-01A	IRF2BP2	chr1	234744241	-	SP2	chr17	46002285	+
intron-3CDS	ENST00000491430	ENST00000376741		TCGA	RV	PCPG	TCGA-QR-A708-01A	IRF2BP2	chr1	234744241	-	SP2	chr17	46002285	+
In-frame	ENST00000359562	ENST00000264451		TCGA	RV	PCPG	TCGA-SP-A6QI-01A	HAND2	chr4	174449886	-	SLC30A9	chr4	42041003	+
intron-3CDS	ENST00000505300	ENST00000264451		TCGA	RV	PCPG	TCGA-SP-A6QI-01A	HAND2	chr4	174449886	-	SLC30A9	chr4	42041003	+
Frame-shit	ENST00000444303	ENST00000284268		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
Frame-shit	ENST00000444303	ENST00000535119		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
5CDS-intron	ENST00000444303	ENST00000503939		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
Frame-shit	ENST00000396554	ENST00000284268		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
Frame-shit	ENST00000396554	ENST00000535119		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
5CDS-intron	ENST00000396554	ENST00000503939		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
3UTR-3CDS	ENST00000530864	ENST00000284268		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
3UTR-3CDS	ENST00000530864	ENST00000535119		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
3UTR-intron	ENST00000530864	ENST00000503939		TCGA	RV	PCPG	TCGA-WB-A81H-01A	AMPD3	chr11	10523137	+	ANKH	chr5	14711419	-
Frame-shit	ENST00000315183	ENST00000369308		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	TNRC6A	chr16	24809287	+	LIX1L	chr1	145492235	+
intron-3CDS	ENST00000562829	ENST00000369308		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	TNRC6A	chr16	24809287	+	LIX1L	chr1	145492235	+
Frame-shit	ENST00000395799	ENST00000369308		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	TNRC6A	chr16	24809287	+	LIX1L	chr1	145492235	+
intron-3CDS	ENST00000432286	ENST00000369308		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	TNRC6A	chr16	24809287	+	LIX1L	chr1	145492235	+
Frame-shit	ENST00000509479	ENST00000293443		TCGA	RV	PCPG	TCGA-WB-A80K-01A	MAML3	chr4	141074014	-	FAM171A2	chr17	42433956	-
intron-3CDS	ENST00000327122	ENST00000293443		TCGA	RV	PCPG	TCGA-WB-A80K-01A	MAML3	chr4	141074014	-	FAM171A2	chr17	42433956	-
intron-3CDS	ENST00000398940	ENST00000293443		TCGA	RV	PCPG	TCGA-WB-A80K-01A	MAML3	chr4	141074014	-	FAM171A2	chr17	42433956	-
Frame-shit	ENST00000283943	ENST00000295190		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000389045	ENST00000295190		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000389044	ENST00000295190		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
intron-3CDS	ENST00000543084	ENST00000295190		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
Frame-shit	ENST00000409677	ENST00000295190		TCGA	RV	PCPG	TCGA-WB-A81S-01A	TRIP12	chr2	230723488	-	SLC16A14	chr2	230902247	-
5CDS-5UTR	ENST00000414350	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000343632	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000381756	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000405147	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000325180	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
5CDS-5UTR	ENST00000337437	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000406772	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000488672	ENST00000249014		TCGA	RV	PCPG	TCGA-P7-A5NX-01A	GGA1	chr22	38004910	+	CDC42EP1	chr22	37962079	+
Frame-shit	ENST00000404039	ENST00000304718		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000404039	ENST00000485685		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
Frame-shit	ENST00000406326	ENST00000304718		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000406326	ENST00000485685		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
Frame-shit	ENST00000377770	ENST00000304718		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000377770	ENST00000485685		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
Frame-shit	ENST00000332007	ENST00000304718		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000332007	ENST00000485685		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
3UTR-3CDS	ENST00000496611	ENST00000304718		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
3UTR-intron	ENST00000496611	ENST00000485685		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
Frame-shit	ENST00000427557	ENST00000304718		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
5CDS-intron	ENST00000427557	ENST00000485685		TCGA	RV	PCPG	TCGA-WB-A81W-01A	DPP6	chr7	154172122	+	GGNBP2	chr17	34937774	+
In-frame	ENST00000356458	ENST00000356805		TCGA	RV	PCPG	TCGA-SR-A6MY-01A	EML6	chr2	54952395	+	SPTBN1	chr2	54893052	+
5CDS-intron	ENST00000356458	ENST00000333896		TCGA	RV	PCPG	TCGA-SR-A6MY-01A	EML6	chr2	54952395	+	SPTBN1	chr2	54893052	+
intron-3CDS	ENST00000490828	ENST00000356805		TCGA	RV	PCPG	TCGA-SR-A6MY-01A	EML6	chr2	54952395	+	SPTBN1	chr2	54893052	+
intron-intron	ENST00000490828	ENST00000333896		TCGA	RV	PCPG	TCGA-SR-A6MY-01A	EML6	chr2	54952395	+	SPTBN1	chr2	54893052	+
intron-3CDS	ENST00000596528	ENST00000263382		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
intron-intron	ENST00000596528	ENST00000592798		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
intron-intron	ENST00000596528	ENST00000474890		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
In-frame	ENST00000599743	ENST00000263382		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
5CDS-intron	ENST00000599743	ENST00000592798		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
5CDS-intron	ENST00000599743	ENST00000474890		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
In-frame	ENST00000300619	ENST00000263382		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
5CDS-intron	ENST00000300619	ENST00000592798		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
5CDS-intron	ENST00000300619	ENST00000474890		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
In-frame	ENST00000397082	ENST00000263382		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
5CDS-intron	ENST00000397082	ENST00000592798		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
5CDS-intron	ENST00000397082	ENST00000474890		TCGA	RV	PCPG	TCGA-S7-A7WP-01A	ZNF91	chr19	23578127	-	ASF1B	chr19	14232520	-
In-frame	ENST00000369250	ENST00000539909		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369250	ENST00000286621		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369250	ENST00000372734		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369250	ENST00000541550		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
5CDS-intron	ENST00000369250	ENST00000467840		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369248	ENST00000539909		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369248	ENST00000286621		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369248	ENST00000372734		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369248	ENST00000541550		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
5CDS-intron	ENST00000369248	ENST00000467840		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369246	ENST00000539909		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369246	ENST00000286621		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369246	ENST00000372734		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000369246	ENST00000541550		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
5CDS-intron	ENST00000369246	ENST00000467840		TCGA	RV	PCPG	TCGA-WB-A81S-01A	FAM160B1	chr10	116593161	+	ADK	chr10	76349040	+
In-frame	ENST00000354570	ENST00000359015		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
In-frame	ENST00000354570	ENST00000355845		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
5CDS-5UTR	ENST00000354570	ENST00000463140		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000454590	ENST00000359015		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000454590	ENST00000355845		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-5UTR	ENST00000454590	ENST00000463140		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000544465	ENST00000359015		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000544465	ENST00000355845		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-5UTR	ENST00000544465	ENST00000463140		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000438100	ENST00000359015		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000438100	ENST00000355845		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-5UTR	ENST00000438100	ENST00000463140		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000432797	ENST00000359015		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-3CDS	ENST00000432797	ENST00000355845		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
intron-5UTR	ENST00000432797	ENST00000463140		TCGA	RV	PCPG	TCGA-RW-A688-01A	MAP7	chr6	136871480	-	MAP3K5	chr6	136904878	-
Frame-shit	ENST00000343638	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000343638	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000343638	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000302904	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000302904	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000527034	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000527034	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000533177	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000533177	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000436088	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000436088	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
Frame-shit	ENST00000393606	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000393606	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000529383	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000529383	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000526094	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
5CDS-intron	ENST00000526094	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000509479		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000537550	ENST00000327122		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
intron-intron	ENST00000537550	ENST00000398940		TCGA	RV	PCPG	TCGA-WB-A80K-01A	UBTF	chr17	42286720	-	MAML3	chr4	140812121	-
In-frame	ENST00000202677	ENST00000405837		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
In-frame	ENST00000202677	ENST00000433053		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
In-frame	ENST00000202677	ENST00000278893		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
In-frame	ENST00000202677	ENST00000360796		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
In-frame	ENST00000202677	ENST00000403550		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
In-frame	ENST00000202677	ENST00000407022		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
In-frame	ENST00000202677	ENST00000421906		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
5CDS-5UTR	ENST00000202677	ENST00000537604		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000405837		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000433053		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000278893		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000360796		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000403550		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000407022		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-3CDS	ENST00000495793	ENST00000421906		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
intron-5UTR	ENST00000495793	ENST00000537604		TCGA	RV	PCPG	TCGA-WB-A81D-01A	RALGAPA2	chr20	20610007	-	BSCL2	chr11	62462183	-
Frame-shit	ENST00000159111	ENST00000373880		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000159111	ENST00000433653		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000159111	ENST00000373878		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000159111	ENST00000472199		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
Frame-shit	ENST00000381759	ENST00000373880		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000381759	ENST00000433653		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000381759	ENST00000373878		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000381759	ENST00000472199		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
Frame-shit	ENST00000536461	ENST00000373880		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000536461	ENST00000433653		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000536461	ENST00000373878		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000536461	ENST00000472199		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
intron-3CDS	ENST00000592175	ENST00000373880		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000592175	ENST00000433653		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000592175	ENST00000373878		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000592175	ENST00000472199		TCGA	RV	PCPG	TCGA-WB-A80M-01A	KDM4B	chr19	5082515	+	PHYHIPL	chr10	61004817	+
In-frame	ENST00000560371	ENST00000267615		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000560371	ENST00000354313		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000560371	ENST00000556603		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000560371	ENST00000555495		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
5CDS-5UTR	ENST00000560371	ENST00000556954		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000347662	ENST00000267615		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000347662	ENST00000354313		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000347662	ENST00000556603		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000347662	ENST00000555495		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
5CDS-5UTR	ENST00000347662	ENST00000556954		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000392745	ENST00000267615		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000392745	ENST00000354313		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000392745	ENST00000556603		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000392745	ENST00000555495		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
5CDS-5UTR	ENST00000392745	ENST00000556954		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000539721	ENST00000267615		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000539721	ENST00000354313		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000539721	ENST00000556603		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000539721	ENST00000555495		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
5CDS-5UTR	ENST00000539721	ENST00000556954		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000351691	ENST00000267615		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000351691	ENST00000354313		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000351691	ENST00000556603		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
In-frame	ENST00000351691	ENST00000555495		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
5CDS-5UTR	ENST00000351691	ENST00000556954		TCGA	RV	PCPG	TCGA-S7-A7WM-01A	TRAF3	chr14	103342862	+	ITPK1	chr14	93424711	-
5CDS-intron	ENST00000313949	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000313949	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000313949	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371098	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371098	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371098	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371075	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371075	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371075	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371100	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371100	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371100	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371099	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371099	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371099	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371102	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371102	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371102	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000464624	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000464624	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000464624	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000306120	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000306120	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000306120	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371095	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371095	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371095	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371085	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371085	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000371085	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354359	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354359	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000354359	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000265620	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000265620	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000265620	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000306090	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000306090	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000306090	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371081	ENST00000233057		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371081	ENST00000395127		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000371081	ENST00000405334		TCGA	RV	PCPG	TCGA-QT-A5XJ-01A	GNAS	chr20	57486241	+	EIF2AK2	chr2	37342384	-
In-frame	ENST00000274721	ENST00000345383		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000274721	ENST00000536576		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000274721	ENST00000346301		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000274721	ENST00000338104		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000274721	ENST00000354441		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000274721	ENST00000380656		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000274721	ENST00000358622		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000345383		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000536576		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000346301		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000338104		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000354441		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000380656		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000378362	ENST00000358622		TCGA	RV	PCPG	TCGA-TT-A6YN-01A	GFRA3	chr5	137588976	-	TTC8	chr14	89341370	+
In-frame	ENST00000375991	ENST00000379992		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000375991	ENST00000493941		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000375991	ENST00000308675		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
In-frame	ENST00000452279	ENST00000379992		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000452279	ENST00000493941		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000452279	ENST00000308675		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
intron-3CDS	ENST00000311534	ENST00000379992		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
intron-intron	ENST00000311534	ENST00000493941		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
intron-intron	ENST00000311534	ENST00000308675		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
In-frame	ENST00000326094	ENST00000379992		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000326094	ENST00000493941		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000326094	ENST00000308675		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	ISCA1	chr9	88897293	-	LINGO2	chr9	28670278	-
5CDS-intron	ENST00000317357	ENST00000540800		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
5CDS-intron	ENST00000317357	ENST00000373677		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
5CDS-intron	ENST00000317357	ENST00000535692		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
5CDS-intron	ENST00000317357	ENST00000510661		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
intron-intron	ENST00000494935	ENST00000540800		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
intron-intron	ENST00000494935	ENST00000373677		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
intron-intron	ENST00000494935	ENST00000535692		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
intron-intron	ENST00000494935	ENST00000510661		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	SOBP	chr6	107854814	+	NHSL2	chrX	71379687	+
5CDS-5UTR	ENST00000374586	ENST00000427841		TCGA	LD	PCPG	TCGA-P7-A5NX-01A	TMEM245	chr9	111826757	-	SDHAP1	chr3	195690292	-
intron-3CDS	ENST00000304166	ENST00000326139		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3CDS	ENST00000304166	ENST00000409904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3CDS	ENST00000304166	ENST00000409316		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3UTR	ENST00000304166	ENST00000461424		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3CDS	ENST00000409363	ENST00000326139		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3CDS	ENST00000409363	ENST00000409904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3CDS	ENST00000409363	ENST00000409316		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-3UTR	ENST00000409363	ENST00000461424		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
In-frame	ENST00000396211	ENST00000326139		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
In-frame	ENST00000396211	ENST00000409904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
Frame-shit	ENST00000396211	ENST00000409316		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
5CDS-3UTR	ENST00000396211	ENST00000461424		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
In-frame	ENST00000409489	ENST00000326139		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
In-frame	ENST00000409489	ENST00000409904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
Frame-shit	ENST00000409489	ENST00000409316		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
5CDS-3UTR	ENST00000409489	ENST00000461424		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	ADCYAP1R1	chr7	31139824	+	GHRHR	chr7	31014586	+
intron-5UTR	ENST00000381395	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000381406	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000416167	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000300632	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000434045	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000381392	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000381389	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
intron-5UTR	ENST00000418738	ENST00000331289		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	IGF2	chr11	2151455	-	ASCL2	chr11	2291819	-
Frame-shit	ENST00000509479	ENST00000225308		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
Frame-shit	ENST00000509479	ENST00000377095		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
Frame-shit	ENST00000509479	ENST00000590194		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
5CDS-intron	ENST00000509479	ENST00000586016		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
5CDS-intron	ENST00000509479	ENST00000537904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
Frame-shit	ENST00000327122	ENST00000225308		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
Frame-shit	ENST00000327122	ENST00000377095		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
Frame-shit	ENST00000327122	ENST00000590194		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
5CDS-intron	ENST00000327122	ENST00000586016		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
5CDS-intron	ENST00000327122	ENST00000537904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
intron-3CDS	ENST00000398940	ENST00000225308		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
intron-3CDS	ENST00000398940	ENST00000377095		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
intron-3CDS	ENST00000398940	ENST00000590194		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
intron-intron	ENST00000398940	ENST00000586016		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
intron-intron	ENST00000398940	ENST00000537904		TCGA	LD	PCPG	TCGA-P8-A5KC-01A	MAML3	chr4	140810511	-	SLC25A39	chr17	42400711	-
3UTR-3UTR	ENST00000335350	ENST00000381395		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000335350	ENST00000381406		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000335350	ENST00000416167		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000335350	ENST00000300632		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000335350	ENST00000434045		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000335350	ENST00000381392		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000335350	ENST00000381389		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000335350	ENST00000418738		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000373192	ENST00000381395		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000373192	ENST00000381406		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000373192	ENST00000416167		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-3UTR	ENST00000373192	ENST00000300632		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000373192	ENST00000434045		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000373192	ENST00000381392		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000373192	ENST00000381389		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
3UTR-intron	ENST00000373192	ENST00000418738		TCGA	LD	PCPG	TCGA-PR-A5PG-01A	UNC5B	chr10	73060503	+	IGF2	chr11	2153376	-
Frame-shit	ENST00000509479	ENST00000394126		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
Frame-shit	ENST00000509479	ENST00000356271		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
Frame-shit	ENST00000509479	ENST00000394128		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
Frame-shit	ENST00000509479	ENST00000394127		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
Frame-shit	ENST00000509479	ENST00000501516		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
5CDS-5UTR	ENST00000509479	ENST00000479829		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000327122	ENST00000394126		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000327122	ENST00000356271		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000327122	ENST00000394128		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000327122	ENST00000394127		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000327122	ENST00000501516		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-5UTR	ENST00000327122	ENST00000479829		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000398940	ENST00000394126		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000398940	ENST00000356271		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000398940	ENST00000394128		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000398940	ENST00000394127		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-3CDS	ENST00000398940	ENST00000501516		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
intron-5UTR	ENST00000398940	ENST00000479829		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	MAML3	chr4	141074014	-	MED24	chr17	38209633	-
Frame-shit	ENST00000298231	ENST00000294053		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
Frame-shit	ENST00000298231	ENST00000538039		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
Frame-shit	ENST00000298231	ENST00000437826		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
Frame-shit	ENST00000298231	ENST00000340729		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
Frame-shit	ENST00000298231	ENST00000543042		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
Frame-shit	ENST00000298231	ENST00000445069		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5CDS-intron	ENST00000298231	ENST00000538021		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5CDS-intron	ENST00000298231	ENST00000542555		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000544057	ENST00000294053		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000544057	ENST00000538039		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000544057	ENST00000437826		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000544057	ENST00000340729		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000544057	ENST00000543042		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000544057	ENST00000445069		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-intron	ENST00000544057	ENST00000538021		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-intron	ENST00000544057	ENST00000542555		TCGA	LD	PCPG	TCGA-PR-A5PH-01A	PHOX2A	chr11	71952146	-	CLPB	chr11	72070052	-
5UTR-3CDS	ENST00000342350	ENST00000388820		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
5UTR-5UTR	ENST00000342350	ENST00000566303		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
intron-3CDS	ENST00000588499	ENST00000388820		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
intron-5UTR	ENST00000588499	ENST00000566303		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
intron-3CDS	ENST00000588295	ENST00000388820		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
intron-5UTR	ENST00000588295	ENST00000566303		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
5UTR-3CDS	ENST00000310604	ENST00000388820		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
5UTR-5UTR	ENST00000310604	ENST00000566303		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
intron-3CDS	ENST00000452796	ENST00000388820		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
intron-5UTR	ENST00000452796	ENST00000566303		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	DCAKD	chr17	43138256	-	ADAMTS7	chr15	79083565	-
In-frame	ENST00000437809	ENST00000368315		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000437809	ENST00000313695		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000437809	ENST00000361247		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000437809	ENST00000368316		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000437809	ENST00000462460		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000437809	ENST00000477754		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000437809	ENST00000313667		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000368331	ENST00000368315		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000368331	ENST00000313695		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000368331	ENST00000361247		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000368331	ENST00000368316		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000368331	ENST00000462460		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000368331	ENST00000477754		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000368331	ENST00000313667		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000271883	ENST00000368315		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000271883	ENST00000313695		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000271883	ENST00000361247		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000271883	ENST00000368316		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000271883	ENST00000462460		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000271883	ENST00000477754		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000271883	ENST00000313667		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000361040	ENST00000368315		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000361040	ENST00000313695		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000361040	ENST00000361247		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000361040	ENST00000368316		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
In-frame	ENST00000361040	ENST00000462460		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000361040	ENST00000477754		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-intron	ENST00000361040	ENST00000313667		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-3CDS	ENST00000471341	ENST00000368315		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-3CDS	ENST00000471341	ENST00000313695		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-3CDS	ENST00000471341	ENST00000361247		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-3CDS	ENST00000471341	ENST00000368316		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-3CDS	ENST00000471341	ENST00000462460		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-intron	ENST00000471341	ENST00000477754		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5UTR-intron	ENST00000471341	ENST00000313667		TCGA	LD	PCPG	TCGA-QR-A6GS-01A	GON4L	chr1	155823067	-	ARHGEF2	chr1	155932509	-
5CDS-3UTR	ENST00000409419	ENST00000313949		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409419	ENST00000371098		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409419	ENST00000371075		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409419	ENST00000371100		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000371099		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000371102		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409419	ENST00000464624		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000306120		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000371095		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000371085		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000354359		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000265620		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000306090		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409419	ENST00000371081		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409587	ENST00000313949		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409587	ENST00000371098		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409587	ENST00000371075		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409587	ENST00000371100		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000371099		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000371102		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409587	ENST00000464624		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000306120		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000371095		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000371085		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000354359		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000265620		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000306090		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409587	ENST00000371081		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-3UTR	ENST00000594085	ENST00000313949		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-3UTR	ENST00000594085	ENST00000371098		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-3UTR	ENST00000594085	ENST00000371075		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-3UTR	ENST00000594085	ENST00000371100		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000371099		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000371102		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-3UTR	ENST00000594085	ENST00000464624		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000306120		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000371095		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000371085		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000354359		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000265620		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000306090		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
intron-intron	ENST00000594085	ENST00000371081		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409735	ENST00000313949		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409735	ENST00000371098		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409735	ENST00000371075		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409735	ENST00000371100		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000371099		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000371102		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409735	ENST00000464624		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000306120		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000371095		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000371085		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000354359		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000265620		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000306090		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409735	ENST00000371081		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000356508	ENST00000313949		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000356508	ENST00000371098		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000356508	ENST00000371075		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000356508	ENST00000371100		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000371099		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000371102		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000356508	ENST00000464624		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000306120		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000371095		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000371085		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000354359		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000265620		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000306090		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000356508	ENST00000371081		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409281	ENST00000313949		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409281	ENST00000371098		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409281	ENST00000371075		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409281	ENST00000371100		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000371099		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000371102		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-3UTR	ENST00000409281	ENST00000464624		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000306120		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000371095		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000371085		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000354359		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000265620		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000306090		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
5CDS-intron	ENST00000409281	ENST00000371081		TCGA	LD	PCPG	TCGA-QR-A6GT-01A	PLD3	chr19	40882681	+	GNAS	chr20	57473996	+
In-frame	ENST00000019019	ENST00000250237		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
5CDS-intron	ENST00000019019	ENST00000585885		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
In-frame	ENST00000348411	ENST00000250237		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
5CDS-intron	ENST00000348411	ENST00000585885		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
Frame-shit	ENST00000396894	ENST00000250237		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
5CDS-intron	ENST00000396894	ENST00000585885		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
In-frame	ENST00000456787	ENST00000250237		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
5CDS-intron	ENST00000456787	ENST00000585885		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
3UTR-3CDS	ENST00000496365	ENST00000250237		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
3UTR-intron	ENST00000496365	ENST00000585885		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	FTSJ1	chrX	48337504	+	QTRT1	chr19	10822837	+
Frame-shit	ENST00000561743	ENST00000006053		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
Frame-shit	ENST00000561743	ENST00000563383		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
5CDS-intron	ENST00000561743	ENST00000564948		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
5CDS-5UTR	ENST00000561743	ENST00000565912		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
Frame-shit	ENST00000219281	ENST00000006053		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
Frame-shit	ENST00000219281	ENST00000563383		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
5CDS-intron	ENST00000219281	ENST00000564948		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
5CDS-5UTR	ENST00000219281	ENST00000565912		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000539737	ENST00000006053		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000539737	ENST00000563383		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-intron	ENST00000539737	ENST00000564948		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-5UTR	ENST00000539737	ENST00000565912		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000423271	ENST00000006053		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000423271	ENST00000563383		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-intron	ENST00000423271	ENST00000564948		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-5UTR	ENST00000423271	ENST00000565912		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000565662	ENST00000006053		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000565662	ENST00000563383		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-intron	ENST00000565662	ENST00000564948		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-5UTR	ENST00000565662	ENST00000565912		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000563149	ENST00000006053		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-3CDS	ENST00000563149	ENST00000563383		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-intron	ENST00000563149	ENST00000564948		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
intron-5UTR	ENST00000563149	ENST00000565912		TCGA	LD	PCPG	TCGA-QR-A6GW-01A	USB1	chr16	58048230	+	CX3CL1	chr16	57413546	+
Frame-shit	ENST00000256413	ENST00000378407		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000256413	ENST00000378406		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000256413	ENST00000426546		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000256413	ENST00000327351		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000256413	ENST00000421582		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000256413	ENST00000378409		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000382998	ENST00000378407		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000382998	ENST00000378406		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000382998	ENST00000426546		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000382998	ENST00000327351		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000382998	ENST00000421582		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
Frame-shit	ENST00000382998	ENST00000378409		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000592658	ENST00000378407		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000592658	ENST00000378406		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000592658	ENST00000426546		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000592658	ENST00000327351		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000592658	ENST00000421582		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
intron-3CDS	ENST00000592658	ENST00000378409		TCGA	LD	PCPG	TCGA-QR-A6H4-01A	CTIF	chr18	46343747	+	CCDC107	chr9	35658573	+
5CDS-intron	ENST00000397843	ENST00000264036		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
5CDS-intron	ENST00000397843	ENST00000392814		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
5CDS-5UTR	ENST00000397843	ENST00000530144		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
5CDS-intron	ENST00000356641	ENST00000264036		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
5CDS-intron	ENST00000356641	ENST00000392814		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
5CDS-5UTR	ENST00000356641	ENST00000530144		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
intron-intron	ENST00000532993	ENST00000264036		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
intron-intron	ENST00000532993	ENST00000392814		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
intron-5UTR	ENST00000532993	ENST00000530144		TCGA	LD	PCPG	TCGA-QR-A700-01A	ARHGEF12	chr11	120207984	+	MCAM	chr11	119188625	-
intron-3CDS	ENST00000366610	ENST00000376741		TCGA	LD	PCPG	TCGA-QR-A700-01A	IRF2BP2	chr1	234744414	-	SP2	chr17	46002283	+
intron-3CDS	ENST00000366609	ENST00000376741		TCGA	LD	PCPG	TCGA-QR-A700-01A	IRF2BP2	chr1	234744414	-	SP2	chr17	46002283	+
intron-3CDS	ENST00000491430	ENST00000376741		TCGA	LD	PCPG	TCGA-QR-A700-01A	IRF2BP2	chr1	234744414	-	SP2	chr17	46002283	+
In-frame	ENST00000356175	ENST00000325874		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000358273	ENST00000325874		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000431387	ENST00000325874		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000431387	ENST00000581280		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000431387	ENST00000394744		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	PCPG	TCGA-QR-A707-01A	NF1	chr17	29541603	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000366610	ENST00000376741		TCGA	LD	PCPG	TCGA-QR-A708-01A	IRF2BP2	chr1	234744193	-	SP2	chr17	46002285	+
Frame-shit	ENST00000366609	ENST00000376741		TCGA	LD	PCPG	TCGA-QR-A708-01A	IRF2BP2	chr1	234744193	-	SP2	chr17	46002285	+
intron-3CDS	ENST00000491430	ENST00000376741		TCGA	LD	PCPG	TCGA-QR-A708-01A	IRF2BP2	chr1	234744193	-	SP2	chr17	46002285	+
In-frame	ENST00000380249	ENST00000375251		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
In-frame	ENST00000380249	ENST00000375249		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
5CDS-3UTR	ENST00000380249	ENST00000466976		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
In-frame	ENST00000338382	ENST00000375251		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
In-frame	ENST00000338382	ENST00000375249		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
5CDS-3UTR	ENST00000338382	ENST00000466976		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
intron-3CDS	ENST00000605086	ENST00000375251		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
intron-3CDS	ENST00000605086	ENST00000375249		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
intron-3UTR	ENST00000605086	ENST00000466976		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
intron-3CDS	ENST00000604828	ENST00000375251		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
intron-3CDS	ENST00000604828	ENST00000375249		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
intron-3UTR	ENST00000604828	ENST00000466976		TCGA	LD	PCPG	TCGA-QR-A70C-01A	FOCAD	chr9	20789607	+	HABP4	chr9	99250371	+
In-frame	ENST00000083182	ENST00000346213		TCGA	LD	PCPG	TCGA-QR-A70G-01B	APPBP2	chr17	58571827	-	RAB5C	chr17	40280818	-
In-frame	ENST00000083182	ENST00000393860		TCGA	LD	PCPG	TCGA-QR-A70G-01B	APPBP2	chr17	58571827	-	RAB5C	chr17	40280818	-
In-frame	ENST00000083182	ENST00000547517		TCGA	LD	PCPG	TCGA-QR-A70G-01B	APPBP2	chr17	58571827	-	RAB5C	chr17	40280818	-
intron-3CDS	ENST00000592995	ENST00000346213		TCGA	LD	PCPG	TCGA-QR-A70G-01B	APPBP2	chr17	58571827	-	RAB5C	chr17	40280818	-
intron-3CDS	ENST00000592995	ENST00000393860		TCGA	LD	PCPG	TCGA-QR-A70G-01B	APPBP2	chr17	58571827	-	RAB5C	chr17	40280818	-
intron-3CDS	ENST00000592995	ENST00000547517		TCGA	LD	PCPG	TCGA-QR-A70G-01B	APPBP2	chr17	58571827	-	RAB5C	chr17	40280818	-
intron-3CDS	ENST00000492622	ENST00000298858		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000520328		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000256324		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000521077		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000518665		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000518868		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000519019		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000492622	ENST00000523816		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000492622	ENST00000525393		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000492622	ENST00000428926		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000492622	ENST00000522322		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000492622	ENST00000523771		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000492622	ENST00000412671		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000492622	ENST00000517877		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-intron	ENST00000492622	ENST00000523576		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000298858		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000520328		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000256324		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000521077		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000518665		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000518868		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000519019		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-3CDS	ENST00000541916	ENST00000523816		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000541916	ENST00000525393		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000541916	ENST00000428926		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000541916	ENST00000522322		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000541916	ENST00000523771		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000541916	ENST00000412671		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-5UTR	ENST00000541916	ENST00000517877		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5UTR-intron	ENST00000541916	ENST00000523576		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000298858		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000520328		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000256324		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000521077		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000518665		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000518868		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000519019		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-3CDS	ENST00000398316	ENST00000523816		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000525393		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000428926		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000522322		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000523771		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000412671		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-5UTR	ENST00000398316	ENST00000517877		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
intron-intron	ENST00000398316	ENST00000523576		TCGA	LD	PCPG	TCGA-QR-A70G-01B	FNDC3A	chr13	49551053	+	C14orf159	chr14	91633569	+
5CDS-3UTR	ENST00000257821	ENST00000591658		TCGA	LD	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
5CDS-3UTR	ENST00000323180	ENST00000591658		TCGA	LD	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
5CDS-3UTR	ENST00000418153	ENST00000591658		TCGA	LD	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
intron-3UTR	ENST00000527753	ENST00000591658		TCGA	LD	PCPG	TCGA-QR-A70G-01B	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
Frame-shit	ENST00000577031	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
Frame-shit	ENST00000577031	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5CDS-intron	ENST00000577031	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
Frame-shit	ENST00000318059	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
Frame-shit	ENST00000318059	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5CDS-intron	ENST00000318059	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-3CDS	ENST00000573553	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-3CDS	ENST00000573553	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-intron	ENST00000573553	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-3CDS	ENST00000575848	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-3CDS	ENST00000575848	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-intron	ENST00000575848	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-3CDS	ENST00000571941	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-3CDS	ENST00000571941	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
intron-intron	ENST00000571941	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
Frame-shit	ENST00000576217	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
Frame-shit	ENST00000576217	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5CDS-intron	ENST00000576217	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5UTR-3CDS	ENST00000575942	ENST00000421306		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5UTR-3CDS	ENST00000575942	ENST00000262483		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5UTR-intron	ENST00000575942	ENST00000576664		TCGA	LD	PCPG	TCGA-QR-A70I-01A	PAM16	chr16	4401233	-	PITPNM3	chr17	6387612	-
5CDS-intron	ENST00000327921	ENST00000516892		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG3	chr14	101311795	+
5CDS-intron	ENST00000262233	ENST00000516892		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG3	chr14	101311795	+
5CDS-intron	ENST00000334192	ENST00000516892		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG3	chr14	101311795	+
intron-intron	ENST00000556758	ENST00000516892		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG3	chr14	101311795	+
5CDS-intron	ENST00000327921	ENST00000458974		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG8	chr14	101311795	+
5CDS-intron	ENST00000262233	ENST00000458974		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG8	chr14	101311795	+
5CDS-intron	ENST00000334192	ENST00000458974		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG8	chr14	101311795	+
intron-intron	ENST00000556758	ENST00000458974		TCGA	LD	PCPG	TCGA-QR-A70J-01A	EML1	chr14	100363631	+	MEG8	chr14	101311795	+
intron-intron	ENST00000524394	ENST00000402718		TCGA	LD	PCPG	TCGA-QR-A70X-01A	ZNF251	chr8	145979068	-	COMMD5	chr8	146067128	-
intron-intron	ENST00000524394	ENST00000450361		TCGA	LD	PCPG	TCGA-QR-A70X-01A	ZNF251	chr8	145979068	-	COMMD5	chr8	146067128	-
intron-intron	ENST00000524394	ENST00000305103		TCGA	LD	PCPG	TCGA-QR-A70X-01A	ZNF251	chr8	145979068	-	COMMD5	chr8	146067128	-
5CDS-intron	ENST00000292562	ENST00000402718		TCGA	LD	PCPG	TCGA-QR-A70X-01A	ZNF251	chr8	145979068	-	COMMD5	chr8	146067128	-
5CDS-intron	ENST00000292562	ENST00000450361		TCGA	LD	PCPG	TCGA-QR-A70X-01A	ZNF251	chr8	145979068	-	COMMD5	chr8	146067128	-
5CDS-intron	ENST00000292562	ENST00000305103		TCGA	LD	PCPG	TCGA-QR-A70X-01A	ZNF251	chr8	145979068	-	COMMD5	chr8	146067128	-
intron-3CDS	ENST00000451237	ENST00000353487		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	B3GALT4	chr6	33246777	+	SPPL3	chr12	121248689	-
3UTR-3CDS	ENST00000606990	ENST00000353487		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	B3GALT4	chr6	33246777	+	SPPL3	chr12	121248689	-
intron-3CDS	ENST00000415322	ENST00000353487		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	B3GALT4	chr6	33246777	+	SPPL3	chr12	121248689	-
intron-3CDS	ENST00000419471	ENST00000353487		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	B3GALT4	chr6	33246777	+	SPPL3	chr12	121248689	-
intron-3CDS	ENST00000430971	ENST00000353487		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	B3GALT4	chr6	33246777	+	SPPL3	chr12	121248689	-
intron-3CDS	ENST00000383209	ENST00000353487		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	B3GALT4	chr6	33246777	+	SPPL3	chr12	121248689	-
intron-3UTR	ENST00000441493	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000441493	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000441493	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000441493	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000441493	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000441493	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000441493	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000441493	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000441493	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000400561	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000400561	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000400561	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000400561	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000400561	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000400561	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000400561	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000400561	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000400561	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000444520	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000444520	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000444520	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000444520	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000444520	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000444520	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000444520	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000444520	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000444520	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000414725	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000414725	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000414725	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000414725	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000414725	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000414725	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000414725	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000414725	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000414725	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000383094	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000383094	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000383094	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000383094	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000383094	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000383094	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000383094	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000383094	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000383094	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000207726	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000207726	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000207726	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000207726	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000207726	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000207726	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000207726	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000207726	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000207726	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000429452	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000429452	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000429452	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000429452	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000429452	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000429452	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000429452	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000429452	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000429452	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000585038	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000585038	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000585038	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000585038	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000585038	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000585038	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000585038	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000585038	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000585038	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000580469	ENST00000370931		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000580469	ENST00000370932		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000580469	ENST00000351052		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-3UTR	ENST00000580469	ENST00000460330		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000580469	ENST00000354608		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000580469	ENST00000356595		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000580469	ENST00000414819		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000580469	ENST00000306666		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
intron-intron	ENST00000580469	ENST00000370924		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	MICAL3	chr22	18484159	-	PTGER3	chr1	71318542	-
3UTR-3CDS	ENST00000380821	ENST00000380249		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
3UTR-3CDS	ENST00000380821	ENST00000338382		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
3UTR-3CDS	ENST00000380821	ENST00000605086		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
3UTR-intron	ENST00000380821	ENST00000604828		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-3CDS	ENST00000461041	ENST00000380249		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-3CDS	ENST00000461041	ENST00000338382		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-3CDS	ENST00000461041	ENST00000605086		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-intron	ENST00000461041	ENST00000604828		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-3CDS	ENST00000380799	ENST00000380249		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-3CDS	ENST00000380799	ENST00000338382		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-3CDS	ENST00000380799	ENST00000605086		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
intron-intron	ENST00000380799	ENST00000604828		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SNAPC3	chr9	15461803	+	FOCAD	chr9	20923659	+
5CDS-intron	ENST00000353487	ENST00000451237		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SPPL3	chr12	121341648	-	B3GALT4	chr6	33252123	+
5CDS-3UTR	ENST00000353487	ENST00000606990		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SPPL3	chr12	121341648	-	B3GALT4	chr6	33252123	+
5CDS-intron	ENST00000353487	ENST00000415322		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SPPL3	chr12	121341648	-	B3GALT4	chr6	33252123	+
5CDS-intron	ENST00000353487	ENST00000419471		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SPPL3	chr12	121341648	-	B3GALT4	chr6	33252123	+
5CDS-intron	ENST00000353487	ENST00000430971		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SPPL3	chr12	121341648	-	B3GALT4	chr6	33252123	+
5CDS-intron	ENST00000353487	ENST00000383209		TCGA	LD	PCPG	TCGA-QT-A5XJ-01A	SPPL3	chr12	121341648	-	B3GALT4	chr6	33252123	+
5UTR-intron	ENST00000360909	ENST00000376705		TCGA	LD	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97408109	+
5UTR-intron	ENST00000351081	ENST00000376705		TCGA	LD	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97408109	+
intron-intron	ENST00000395125	ENST00000376705		TCGA	LD	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97408109	+
5UTR-intron	ENST00000556135	ENST00000376705		TCGA	LD	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97408109	+
intron-intron	ENST00000553966	ENST00000376705		TCGA	LD	PCPG	TCGA-QT-A5XN-01A	DAAM1	chr14	59655486	+	HS6ST3	chr13	97408109	+
5CDS-5UTR	ENST00000404338	ENST00000535714		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	ARHGAP35	chr19	47440665	+	PGPEP1L	chr15	99512880	-
5CDS-5UTR	ENST00000404338	ENST00000378919		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	ARHGAP35	chr19	47440665	+	PGPEP1L	chr15	99512880	-
intron-5UTR	ENST00000598548	ENST00000535714		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	ARHGAP35	chr19	47440665	+	PGPEP1L	chr15	99512880	-
intron-5UTR	ENST00000598548	ENST00000378919		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	ARHGAP35	chr19	47440665	+	PGPEP1L	chr15	99512880	-
5CDS-intron	ENST00000396299	ENST00000369109		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396299	ENST00000360244		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396299	ENST00000414276		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396299	ENST00000461320		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000357727	ENST00000369109		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000357727	ENST00000360244		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000357727	ENST00000414276		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000357727	ENST00000461320		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396300	ENST00000369109		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396300	ENST00000360244		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396300	ENST00000414276		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396300	ENST00000461320		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000409603	ENST00000369109		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000409603	ENST00000360244		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000409603	ENST00000414276		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000409603	ENST00000461320		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396298	ENST00000369109		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396298	ENST00000360244		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396298	ENST00000414276		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
5CDS-intron	ENST00000396298	ENST00000461320		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
intron-intron	ENST00000482692	ENST00000369109		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
intron-intron	ENST00000482692	ENST00000360244		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
intron-intron	ENST00000482692	ENST00000414276		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
intron-intron	ENST00000482692	ENST00000461320		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	CREB5	chr7	28763949	+	APH1A	chr1	150241729	-
Frame-shit	ENST00000490337	ENST00000273286		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000490337	ENST00000493075		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000389636	ENST00000273286		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000389636	ENST00000493075		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000471742	ENST00000273286		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000471742	ENST00000493075		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000302490	ENST00000273286		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000302490	ENST00000493075		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000389634	ENST00000273286		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000389634	ENST00000493075		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
3UTR-3CDS	ENST00000497291	ENST00000273286		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
3UTR-3CDS	ENST00000497291	ENST00000493075		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	KCNAB1	chr3	156233009	+	LRTM1	chr3	54952919	-
Frame-shit	ENST00000540320	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000540320	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000540320	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000540320	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000540320	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
Frame-shit	ENST00000400445	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000400445	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000400445	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000400445	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000400445	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
Frame-shit	ENST00000310336	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000310336	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000310336	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000310336	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000310336	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
Frame-shit	ENST00000379939	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000379939	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000379939	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000379939	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000379939	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-3CDS	ENST00000537702	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000537702	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000537702	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000537702	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000537702	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-3CDS	ENST00000379922	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000379922	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000379922	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000379922	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000379922	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-3CDS	ENST00000461581	ENST00000546159		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000461581	ENST00000486375		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000461581	ENST00000367521		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000461581	ENST00000361927		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
intron-intron	ENST00000461581	ENST00000367520		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	NBEA	chr13	36046673	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000537971	ENST00000534526		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000531134		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-3UTR	ENST00000537971	ENST00000427716		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000266482		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000546442		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000525053		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000381025		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000472289		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000537971	ENST00000473513		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000534526		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000531134		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-3UTR	ENST00000011898	ENST00000427716		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000266482		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000546442		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000525053		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000381025		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000472289		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000011898	ENST00000473513		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000534526		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000531134		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-3UTR	ENST00000407263	ENST00000427716		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000266482		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000546442		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000525053		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000381025		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000472289		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
5CDS-intron	ENST00000407263	ENST00000473513		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000534526		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000531134		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-3UTR	ENST00000492305	ENST00000427716		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000266482		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000546442		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000525053		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000381025		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000472289		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
intron-intron	ENST00000492305	ENST00000473513		TCGA	LD	PCPG	TCGA-QT-A5XO-01A	TSPAN9	chr12	3310422	+	FGD4	chr12	32797528	+
3UTR-3CDS	ENST00000421743	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000421743	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-intron	ENST00000421743	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000367909	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000367909	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-intron	ENST00000367909	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-3CDS	ENST00000531057	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-3CDS	ENST00000531057	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-intron	ENST00000531057	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-3CDS	ENST00000527809	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-3CDS	ENST00000527809	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-intron	ENST00000527809	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000367908	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000367908	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-intron	ENST00000367908	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000491263	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3CDS	ENST00000491263	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-intron	ENST00000491263	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-3CDS	ENST00000367906	ENST00000341267		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-3CDS	ENST00000367906	ENST00000331224		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
intron-intron	ENST00000367906	ENST00000556051		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	RGS4	chr1	163046330	+	DLK1	chr14	101200650	+
3UTR-3UTR	ENST00000331565	ENST00000381395		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-3UTR	ENST00000331565	ENST00000381406		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-3UTR	ENST00000331565	ENST00000416167		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-3UTR	ENST00000331565	ENST00000300632		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-intron	ENST00000331565	ENST00000434045		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-intron	ENST00000331565	ENST00000381392		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-intron	ENST00000331565	ENST00000381389		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
3UTR-intron	ENST00000331565	ENST00000418738		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-3UTR	ENST00000465159	ENST00000381395		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-3UTR	ENST00000465159	ENST00000381406		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-3UTR	ENST00000465159	ENST00000416167		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-3UTR	ENST00000465159	ENST00000300632		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-intron	ENST00000465159	ENST00000434045		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-intron	ENST00000465159	ENST00000381392		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-intron	ENST00000465159	ENST00000381389		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-intron	ENST00000465159	ENST00000418738		TCGA	LD	PCPG	TCGA-QT-A7U0-01A	SLC6A17	chr1	110743422	+	IGF2	chr11	2153308	-
intron-3CDS	ENST00000448662	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000448662	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000448662	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000431808	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000431808	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000431808	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000284776	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000284776	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000284776	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000437304	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000437304	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000437304	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000319471	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000319471	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000319471	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000449407	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000449407	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000449407	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000355634	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000355634	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000355634	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000393528	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000393528	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000393528	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000418609	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000418609	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000418609	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000498125	ENST00000284770		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000498125	ENST00000284771		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
intron-3CDS	ENST00000498125	ENST00000284767		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	SORBS2	chr4	186696381	-	PDLIM3	chr4	186446325	-
5UTR-3CDS	ENST00000462705	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000462705	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000462705	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-intron	ENST00000462705	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000393785	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000393785	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000393785	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-intron	ENST00000393785	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000481632	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000481632	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000481632	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-intron	ENST00000481632	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000471418	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000471418	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000471418	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-intron	ENST00000471418	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000357258	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000357258	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000357258	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-intron	ENST00000357258	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000464560	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000464560	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000464560	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-intron	ENST00000464560	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000488663	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000488663	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-3CDS	ENST00000488663	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
5UTR-intron	ENST00000488663	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000474710	ENST00000380249		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000474710	ENST00000338382		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000474710	ENST00000605086		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-intron	ENST00000474710	ENST00000604828		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZBTB20	chr3	114619151	-	FOCAD	chr9	20916892	+
intron-3CDS	ENST00000359019	ENST00000295598		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-3CDS	ENST00000359019	ENST00000537345		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-3CDS	ENST00000359019	ENST00000369496		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-intron	ENST00000359019	ENST00000491156		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
Frame-shit	ENST00000334822	ENST00000295598		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
Frame-shit	ENST00000334822	ENST00000537345		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
Frame-shit	ENST00000334822	ENST00000369496		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
5CDS-intron	ENST00000334822	ENST00000491156		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
Frame-shit	ENST00000426126	ENST00000295598		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
Frame-shit	ENST00000426126	ENST00000537345		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
Frame-shit	ENST00000426126	ENST00000369496		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
5CDS-intron	ENST00000426126	ENST00000491156		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-3CDS	ENST00000550789	ENST00000295598		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-3CDS	ENST00000550789	ENST00000537345		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-3CDS	ENST00000550789	ENST00000369496		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
intron-intron	ENST00000550789	ENST00000491156		TCGA	LD	PCPG	TCGA-RT-A6YC-01A	ZDHHC17	chr12	77216311	+	ATP1A1	chr1	116937732	+
5CDS-3UTR	ENST00000257821	ENST00000591658		TCGA	LD	PCPG	TCGA-RW-A67W-01A	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
5CDS-3UTR	ENST00000323180	ENST00000591658		TCGA	LD	PCPG	TCGA-RW-A67W-01A	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
5CDS-3UTR	ENST00000418153	ENST00000591658		TCGA	LD	PCPG	TCGA-RW-A67W-01A	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
intron-3UTR	ENST00000527753	ENST00000591658		TCGA	LD	PCPG	TCGA-RW-A67W-01A	PHF21A	chr11	46098305	-	TTC25	chr17	40117011	+
intron-3CDS	ENST00000434640	ENST00000607484		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
intron-3CDS	ENST00000434640	ENST00000374214		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
5UTR-3CDS	ENST00000380368	ENST00000607484		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
5UTR-3CDS	ENST00000380368	ENST00000374214		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
5UTR-3CDS	ENST00000380375	ENST00000607484		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
5UTR-3CDS	ENST00000380375	ENST00000374214		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
Frame-shit	ENST00000380379	ENST00000607484		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
Frame-shit	ENST00000380379	ENST00000374214		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
intron-3CDS	ENST00000464040	ENST00000607484		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
intron-3CDS	ENST00000464040	ENST00000374214		TCGA	LD	PCPG	TCGA-RW-A686-01A	BPHL	chr6	3119081	+	UQCC2	chr6	33665527	-
3UTR-3CDS	ENST00000216044	ENST00000256652		TCGA	LD	PCPG	TCGA-RW-A686-01A	GTPBP1	chr22	39126886	+	CD101	chr1	117568131	+
3UTR-3CDS	ENST00000216044	ENST00000369470		TCGA	LD	PCPG	TCGA-RW-A686-01A	GTPBP1	chr22	39126886	+	CD101	chr1	117568131	+
3UTR-intron	ENST00000216044	ENST00000467588		TCGA	LD	PCPG	TCGA-RW-A686-01A	GTPBP1	chr22	39126886	+	CD101	chr1	117568131	+
intron-3CDS	ENST00000460605	ENST00000256652		TCGA	LD	PCPG	TCGA-RW-A686-01A	GTPBP1	chr22	39126886	+	CD101	chr1	117568131	+
intron-3CDS	ENST00000460605	ENST00000369470		TCGA	LD	PCPG	TCGA-RW-A686-01A	GTPBP1	chr22	39126886	+	CD101	chr1	117568131	+
intron-intron	ENST00000460605	ENST00000467588		TCGA	LD	PCPG	TCGA-RW-A686-01A	GTPBP1	chr22	39126886	+	CD101	chr1	117568131	+
Frame-shit	ENST00000538303	ENST00000176643		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000538303	ENST00000581518		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000538303	ENST00000395575		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000538303	ENST00000339618		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000538303	ENST00000579855		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000538303	ENST00000571163		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000538303	ENST00000574597		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000379343	ENST00000176643		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000379343	ENST00000581518		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000379343	ENST00000395575		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000379343	ENST00000339618		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000379343	ENST00000579855		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000379343	ENST00000571163		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000379343	ENST00000574597		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-3CDS	ENST00000357055	ENST00000176643		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-3CDS	ENST00000357055	ENST00000581518		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-3CDS	ENST00000357055	ENST00000395575		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-3CDS	ENST00000357055	ENST00000339618		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-3CDS	ENST00000357055	ENST00000579855		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-intron	ENST00000357055	ENST00000571163		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-intron	ENST00000357055	ENST00000574597		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000435660	ENST00000176643		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000435660	ENST00000581518		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000435660	ENST00000395575		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000435660	ENST00000339618		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000435660	ENST00000579855		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000435660	ENST00000571163		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000435660	ENST00000574597		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000282587	ENST00000176643		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000282587	ENST00000581518		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000282587	ENST00000395575		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000282587	ENST00000339618		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000282587	ENST00000579855		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000282587	ENST00000571163		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000282587	ENST00000574597		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000406369	ENST00000176643		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000406369	ENST00000581518		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000406369	ENST00000395575		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000406369	ENST00000339618		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
Frame-shit	ENST00000406369	ENST00000579855		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000406369	ENST00000571163		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5CDS-intron	ENST00000406369	ENST00000574597		TCGA	LD	PCPG	TCGA-RW-A68A-01A	SLC30A6	chr2	32419052	+	ALDH3A2	chr17	19564440	+
5UTR-3CDS	ENST00000064778	ENST00000223642		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FAM168A	chr11	73308968	-	C5	chr9	123808661	-
5UTR-intron	ENST00000064778	ENST00000466280		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FAM168A	chr11	73308968	-	C5	chr9	123808661	-
5UTR-3CDS	ENST00000450446	ENST00000223642		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FAM168A	chr11	73308968	-	C5	chr9	123808661	-
5UTR-intron	ENST00000450446	ENST00000466280		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FAM168A	chr11	73308968	-	C5	chr9	123808661	-
5UTR-3CDS	ENST00000356467	ENST00000223642		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FAM168A	chr11	73308968	-	C5	chr9	123808661	-
5UTR-intron	ENST00000356467	ENST00000466280		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FAM168A	chr11	73308968	-	C5	chr9	123808661	-
intron-5UTR	ENST00000376438	ENST00000459639		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376438	ENST00000380276		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376438	ENST00000291552		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376438	ENST00000398137		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376438	ENST00000486519		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000304195	ENST00000459639		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000304195	ENST00000380276		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000304195	ENST00000291552		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000304195	ENST00000398137		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000304195	ENST00000486519		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000328788	ENST00000459639		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000328788	ENST00000380276		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000328788	ENST00000291552		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000328788	ENST00000398137		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000328788	ENST00000486519		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376434	ENST00000459639		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376434	ENST00000380276		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376434	ENST00000291552		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376434	ENST00000398137		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
intron-5UTR	ENST00000376434	ENST00000486519		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
5UTR-5UTR	ENST00000465485	ENST00000459639		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
5UTR-5UTR	ENST00000465485	ENST00000380276		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
5UTR-5UTR	ENST00000465485	ENST00000291552		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
5UTR-5UTR	ENST00000465485	ENST00000398137		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
5UTR-5UTR	ENST00000465485	ENST00000486519		TCGA	LD	PCPG	TCGA-RW-A8AZ-01A	FRMD3	chr9	85896465	-	U2AF1	chr21	44524512	-
5CDS-5UTR	ENST00000330883	ENST00000492607		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000330883	ENST00000326442		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000330883	ENST00000447204		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000330883	ENST00000434545		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000330883	ENST00000429904		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000330883	ENST00000450753		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000392968	ENST00000492607		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000392968	ENST00000326442		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000392968	ENST00000447204		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000392968	ENST00000434545		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000392968	ENST00000429904		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000392968	ENST00000450753		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000262186	ENST00000492607		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000262186	ENST00000326442		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000262186	ENST00000447204		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000262186	ENST00000434545		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000262186	ENST00000429904		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
5CDS-5UTR	ENST00000262186	ENST00000450753		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000430723	ENST00000492607		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000430723	ENST00000326442		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000430723	ENST00000447204		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000430723	ENST00000434545		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000430723	ENST00000429904		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
intron-5UTR	ENST00000430723	ENST00000450753		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KCNH2	chr7	150643965	-	TMEM176B	chr7	150493662	-
Frame-shit	ENST00000367588	ENST00000367590		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
Frame-shit	ENST00000367588	ENST00000367589		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
5CDS-intron	ENST00000367588	ENST00000467345		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
Frame-shit	ENST00000367587	ENST00000367590		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
Frame-shit	ENST00000367587	ENST00000367589		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
5CDS-intron	ENST00000367587	ENST00000467345		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
intron-3CDS	ENST00000461346	ENST00000367590		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
intron-3CDS	ENST00000461346	ENST00000367589		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
intron-intron	ENST00000461346	ENST00000467345		TCGA	LD	PCPG	TCGA-S7-A7WL-01A	KIAA1614	chr1	180897709	+	XPR1	chr1	180793889	+
intron-3CDS	ENST00000247087	ENST00000262915		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000247087	ENST00000372375		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000247087	ENST00000351035		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000247087	ENST00000372374		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000247087	ENST00000353126		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000545417		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000330208		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000335430		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372377		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000361392		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000361400		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000347631		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000361812		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372362		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000531451		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372366		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372365		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372368		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000332628		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372372		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000531816		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000528371		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372369		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000531993		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000361746		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000533933		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000247087	ENST00000372367		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3UTR	ENST00000247087	ENST00000461375		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000374011	ENST00000262915		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000374011	ENST00000372375		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000374011	ENST00000351035		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000374011	ENST00000372374		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000374011	ENST00000353126		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000545417		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000330208		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000335430		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372377		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000361392		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000361400		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000347631		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000361812		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372362		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000531451		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372366		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372365		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372368		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000332628		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372372		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000531816		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000528371		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372369		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000531993		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000361746		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000533933		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000374011	ENST00000372367		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3UTR	ENST00000374011	ENST00000461375		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000480033	ENST00000262915		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000480033	ENST00000372375		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000480033	ENST00000351035		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000480033	ENST00000372374		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3CDS	ENST00000480033	ENST00000353126		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000545417		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000330208		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000335430		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372377		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000361392		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000361400		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000347631		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000361812		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372362		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000531451		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372366		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372365		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372368		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000332628		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372372		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000531816		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000528371		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372369		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000531993		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000361746		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000533933		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-intron	ENST00000480033	ENST00000372367		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
intron-3UTR	ENST00000480033	ENST00000461375		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	AHDC1	chr1	27861273	-	ST3GAL3	chr1	44363907	+
5CDS-5UTR	ENST00000404234	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000404234	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000404234	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000404234	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000404234	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000404234	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000529632	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000529632	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000529632	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000529632	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000529632	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000529632	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000360929	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000360929	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000360929	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000360929	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000360929	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000360929	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000248933	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000248933	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000248933	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000248933	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000248933	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000248933	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000343706	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000343706	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000343706	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000343706	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000343706	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000343706	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000402979	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000402979	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000402979	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000402979	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000402979	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000402979	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000403121	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000403121	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000403121	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000403121	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-5UTR	ENST00000403121	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
5CDS-intron	ENST00000403121	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000411842	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000411842	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000411842	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-intron	ENST00000411842	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000411842	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-intron	ENST00000411842	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000494013	ENST00000396420		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000494013	ENST00000371984		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000494013	ENST00000371992		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-intron	ENST00000494013	ENST00000535522		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-5UTR	ENST00000494013	ENST00000371986		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
intron-intron	ENST00000494013	ENST00000485714		TCGA	LD	PCPG	TCGA-S7-A7WM-01A	SEZ6L	chr22	26709868	+	POMGNT1	chr1	46663543	-
In-frame	ENST00000227756	ENST00000381175		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
In-frame	ENST00000227756	ENST00000381178		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
In-frame	ENST00000227756	ENST00000352909		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
In-frame	ENST00000227756	ENST00000333684		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
intron-3CDS	ENST00000526064	ENST00000381175		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
intron-3CDS	ENST00000526064	ENST00000381178		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
intron-3CDS	ENST00000526064	ENST00000352909		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
intron-3CDS	ENST00000526064	ENST00000333684		TCGA	LD	PCPG	TCGA-S7-A7WT-01A	GALNT18	chr11	11394062	-	TH	chr11	2191101	-
3UTR-intron	ENST00000341267	ENST00000314922		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000341267	ENST00000451791		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000341267	ENST00000523274		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000341267	ENST00000523051		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000341267	ENST00000518770		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000331224	ENST00000314922		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000331224	ENST00000451791		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000331224	ENST00000523274		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000331224	ENST00000523051		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
3UTR-intron	ENST00000331224	ENST00000518770		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
intron-intron	ENST00000556051	ENST00000314922		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
intron-intron	ENST00000556051	ENST00000451791		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
intron-intron	ENST00000556051	ENST00000523274		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
intron-intron	ENST00000556051	ENST00000523051		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
intron-intron	ENST00000556051	ENST00000518770		TCGA	LD	PCPG	TCGA-SQ-A6I4-01A	DLK1	chr14	101201383	+	PENK	chr8	57359293	-
Frame-shit	ENST00000254624	ENST00000361112		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000254624	ENST00000260908		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000254624	ENST00000449046		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000334503	ENST00000361112		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000334503	ENST00000260908		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000334503	ENST00000449046		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000519656	ENST00000361112		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000519656	ENST00000260908		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000519656	ENST00000449046		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
intron-3CDS	ENST00000521940	ENST00000361112		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
intron-3CDS	ENST00000521940	ENST00000260908		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
intron-3CDS	ENST00000521940	ENST00000449046		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	EFR3A	chr8	132958880	+	SLFN12L	chr17	33805204	-
Frame-shit	ENST00000357731	ENST00000398238		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
Frame-shit	ENST00000357731	ENST00000225282		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
Frame-shit	ENST00000357731	ENST00000575068		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
intron-3CDS	ENST00000306821	ENST00000398238		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
intron-3CDS	ENST00000306821	ENST00000225282		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
intron-3CDS	ENST00000306821	ENST00000575068		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
Frame-shit	ENST00000434200	ENST00000398238		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
Frame-shit	ENST00000434200	ENST00000225282		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
Frame-shit	ENST00000434200	ENST00000575068		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
intron-3CDS	ENST00000467479	ENST00000398238		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
intron-3CDS	ENST00000467479	ENST00000225282		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
intron-3CDS	ENST00000467479	ENST00000575068		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	NEGR1	chr1	72748002	-	NSF	chr17	44751780	+
5CDS-intron	ENST00000255559	ENST00000355072		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
5CDS-intron	ENST00000255559	ENST00000513806		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
intron-intron	ENST00000542342	ENST00000355072		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
intron-intron	ENST00000542342	ENST00000513806		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
intron-intron	ENST00000579988	ENST00000355072		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
intron-intron	ENST00000579988	ENST00000513806		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
5CDS-intron	ENST00000579732	ENST00000355072		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
5CDS-intron	ENST00000579732	ENST00000513806		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	SLC39A11	chr17	70943891	-	HTT	chr17	28538442	-
5UTR-3CDS	ENST00000370794	ENST00000430627		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000370794	ENST00000447079		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-intron	ENST00000370794	ENST00000559545		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
intron-3CDS	ENST00000357428	ENST00000430627		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
intron-3CDS	ENST00000357428	ENST00000447079		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
intron-intron	ENST00000357428	ENST00000559545		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000370793	ENST00000430627		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000370793	ENST00000447079		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-intron	ENST00000370793	ENST00000559545		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000370792	ENST00000430627		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000370792	ENST00000447079		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-intron	ENST00000370792	ENST00000559545		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000528150	ENST00000430627		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-3CDS	ENST00000528150	ENST00000447079		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
5UTR-intron	ENST00000528150	ENST00000559545		TCGA	LD	PCPG	TCGA-SR-A6MP-01A	USP33	chr1	78225328	-	CDK12	chr17	37627135	+
Frame-shit	ENST00000296755	ENST00000253814		TCGA	LD	PCPG	TCGA-SR-A6MR-01A	MAP1B	chr5	71411626	+	NDFIP1	chr5	141511373	+
5CDS-3UTR	ENST00000296755	ENST00000509436		TCGA	LD	PCPG	TCGA-SR-A6MR-01A	MAP1B	chr5	71411626	+	NDFIP1	chr5	141511373	+
3UTR-3CDS	ENST00000504183	ENST00000253814		TCGA	LD	PCPG	TCGA-SR-A6MR-01A	MAP1B	chr5	71411626	+	NDFIP1	chr5	141511373	+
3UTR-3UTR	ENST00000504183	ENST00000509436		TCGA	LD	PCPG	TCGA-SR-A6MR-01A	MAP1B	chr5	71411626	+	NDFIP1	chr5	141511373	+
5CDS-3UTR	ENST00000242152	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000242152	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000242152	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000242152	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000242152	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000242152	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000242152	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000242152	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000407573	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000407573	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000407573	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000407573	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000407573	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000407573	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000407573	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000407573	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000405982	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000405982	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000405982	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-3UTR	ENST00000405982	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000405982	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000405982	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000405982	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
5CDS-intron	ENST00000405982	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	NPY	chr7	24329199	+	IGF2	chr11	2150528	-
intron-3UTR	ENST00000409251	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000409251	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000409251	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000409251	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000409251	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000409251	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000409251	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000409251	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000295718	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000295718	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000295718	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000295718	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000295718	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000295718	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000295718	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000295718	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000423636	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000423636	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000423636	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000423636	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000423636	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000423636	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000423636	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000423636	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000497977	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000497977	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000497977	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-3UTR	ENST00000497977	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000497977	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000497977	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000497977	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
intron-intron	ENST00000497977	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	PTPRN	chr2	220154491	-	IGF2	chr11	2151697	-
3UTR-3UTR	ENST00000497497	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-3UTR	ENST00000497497	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-3UTR	ENST00000497497	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-3UTR	ENST00000497497	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-intron	ENST00000497497	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-intron	ENST00000497497	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-intron	ENST00000497497	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
3UTR-intron	ENST00000497497	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-3UTR	ENST00000298472	ENST00000381395		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-3UTR	ENST00000298472	ENST00000381406		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-3UTR	ENST00000298472	ENST00000416167		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-3UTR	ENST00000298472	ENST00000300632		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-intron	ENST00000298472	ENST00000434045		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-intron	ENST00000298472	ENST00000381392		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-intron	ENST00000298472	ENST00000381389		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
5CDS-intron	ENST00000298472	ENST00000418738		TCGA	LD	PCPG	TCGA-SR-A6MS-01A	SLC18A2	chr10	119003678	+	IGF2	chr11	2152940	-
In-frame	ENST00000537454	ENST00000393056		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	APLP1	chr19	36365771	+	DBH	chr9	136523438	+
In-frame	ENST00000221891	ENST00000393056		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	APLP1	chr19	36365771	+	DBH	chr9	136523438	+
In-frame	ENST00000586861	ENST00000393056		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	APLP1	chr19	36365771	+	DBH	chr9	136523438	+
3UTR-3CDS	ENST00000589298	ENST00000393056		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	APLP1	chr19	36365771	+	DBH	chr9	136523438	+
5UTR-intron	ENST00000358151	ENST00000556107		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000358151	ENST00000313525		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000355824	ENST00000556107		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000355824	ENST00000313525		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000309235	ENST00000556107		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000309235	ENST00000313525		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000374374	ENST00000556107		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5UTR-intron	ENST00000374374	ENST00000313525		TCGA	LD	PCPG	TCGA-SR-A6MT-01A	ZNF483	chr9	114287542	+	DNAJC25	chr9	114405119	+
5CDS-3UTR	ENST00000521381	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000521381	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000521381	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000521381	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-3UTR	ENST00000521657	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000521657	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000521657	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000521657	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-3UTR	ENST00000517643	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000517643	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000517643	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000517643	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-3UTR	ENST00000274335	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000274335	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000274335	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000274335	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-3UTR	ENST00000396611	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000396611	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000396611	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
5CDS-intron	ENST00000396611	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-3UTR	ENST00000320694	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000320694	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000320694	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000320694	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-3UTR	ENST00000336483	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000336483	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000336483	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000336483	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-3UTR	ENST00000523872	ENST00000561952		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000523872	ENST00000426538		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000523872	ENST00000328514		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
intron-intron	ENST00000523872	ENST00000318129		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	PIK3R1	chr5	67522837	+	GINS3	chr16	58420525	+
Frame-shit	ENST00000005386	ENST00000393240		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000005386	ENST00000261205		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000005386	ENST00000457153		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000005386	ENST00000552744		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
5CDS-intron	ENST00000005386	ENST00000549454		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000548211	ENST00000393240		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000548211	ENST00000261205		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000548211	ENST00000457153		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000548211	ENST00000552744		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
intron-intron	ENST00000548211	ENST00000549454		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
In-frame	ENST00000432584	ENST00000393240		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
In-frame	ENST00000432584	ENST00000261205		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
In-frame	ENST00000432584	ENST00000457153		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
In-frame	ENST00000432584	ENST00000552744		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
5CDS-intron	ENST00000432584	ENST00000549454		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000380650	ENST00000393240		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000380650	ENST00000261205		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000380650	ENST00000457153		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000380650	ENST00000552744		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
5CDS-intron	ENST00000380650	ENST00000549454		TCGA	LD	PCPG	TCGA-W2-A7HB-01A	RPAP3	chr12	48090059	-	SYT1	chr12	79747282	+
Frame-shit	ENST00000425013	ENST00000403107		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
In-frame	ENST00000425013	ENST00000404077		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
In-frame	ENST00000425013	ENST00000297186		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-3UTR	ENST00000425013	ENST00000359718		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-3UTR	ENST00000425013	ENST00000433859		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-intron	ENST00000425013	ENST00000463354		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
Frame-shit	ENST00000389902	ENST00000403107		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
In-frame	ENST00000389902	ENST00000404077		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
In-frame	ENST00000389902	ENST00000297186		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-3UTR	ENST00000389902	ENST00000359718		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-3UTR	ENST00000389902	ENST00000433859		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-intron	ENST00000389902	ENST00000463354		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
intron-3CDS	ENST00000469375	ENST00000403107		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
intron-3CDS	ENST00000469375	ENST00000404077		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
intron-3CDS	ENST00000469375	ENST00000297186		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
intron-3UTR	ENST00000469375	ENST00000359718		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
intron-3UTR	ENST00000469375	ENST00000433859		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
intron-intron	ENST00000469375	ENST00000463354		TCGA	LD	PCPG	TCGA-W2-A7HD-01A	RNF216	chr7	5778907	-	RSPH10B2	chr7	6837994	+
5CDS-5UTR	ENST00000262370	ENST00000397086		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000262370	ENST00000320225		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000262370	ENST00000566458		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000262370	ENST00000566397		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000262370	ENST00000565678		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000262370	ENST00000561718		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000262370	ENST00000568631		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000262370	ENST00000569598		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000262370	ENST00000301730		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000262370	ENST00000567147		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000415496	ENST00000397086		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000415496	ENST00000320225		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000415496	ENST00000566458		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000415496	ENST00000566397		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000415496	ENST00000565678		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000415496	ENST00000561718		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000415496	ENST00000568631		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000415496	ENST00000569598		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000415496	ENST00000301730		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000415496	ENST00000567147		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000399577	ENST00000397086		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000399577	ENST00000320225		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000399577	ENST00000566458		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000399577	ENST00000566397		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000399577	ENST00000565678		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000399577	ENST00000561718		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000399577	ENST00000568631		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000399577	ENST00000569598		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000399577	ENST00000301730		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000399577	ENST00000567147		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000588994	ENST00000397086		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000588994	ENST00000320225		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000588994	ENST00000566458		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000588994	ENST00000566397		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000588994	ENST00000565678		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000588994	ENST00000561718		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000588994	ENST00000568631		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000588994	ENST00000569598		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000588994	ENST00000301730		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000588994	ENST00000567147		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000586183	ENST00000397086		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000586183	ENST00000320225		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000586183	ENST00000566458		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000586183	ENST00000566397		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000586183	ENST00000565678		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000586183	ENST00000561718		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000586183	ENST00000568631		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000586183	ENST00000569598		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-5UTR	ENST00000586183	ENST00000301730		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
5CDS-intron	ENST00000586183	ENST00000567147		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-5UTR	ENST00000588015	ENST00000397086		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-5UTR	ENST00000588015	ENST00000320225		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-intron	ENST00000588015	ENST00000566458		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-intron	ENST00000588015	ENST00000566397		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-5UTR	ENST00000588015	ENST00000565678		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-intron	ENST00000588015	ENST00000561718		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-5UTR	ENST00000588015	ENST00000568631		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-5UTR	ENST00000588015	ENST00000569598		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-5UTR	ENST00000588015	ENST00000301730		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-intron	ENST00000588015	ENST00000567147		TCGA	LD	PCPG	TCGA-WB-A80K-01A	MGRN1	chr16	4675049	+	RNPS1	chr16	2314761	-
intron-3CDS	ENST00000534894	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000534894	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000534894	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000536810	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000536810	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000536810	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000545257	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000545257	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000545257	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000355995	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000355995	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000355995	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000543371	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000543371	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000543371	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000355717	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000355717	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000355717	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000538897	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000538897	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000538897	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000349937	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000349937	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000349937	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369397	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369397	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000369397	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000352065	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000352065	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000352065	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369395	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369395	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000369395	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000542695	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000542695	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000542695	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369389	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369389	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000369389	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369386	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000369386	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000369386	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000466338	ENST00000509479		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-3CDS	ENST00000466338	ENST00000327122		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
intron-intron	ENST00000466338	ENST00000398940		TCGA	LD	PCPG	TCGA-WB-A80Y-01A	TCF7L2	chr18	52921728	-	MAML3	chr4	140812121	-
In-frame	ENST00000565468	ENST00000404039		TCGA	LD	PCPG	TCGA-WB-A81D-01A	TMEM178B	chr7	140912504	+	DPP6	chr7	154561127	+
5CDS-intron	ENST00000565468	ENST00000406326		TCGA	LD	PCPG	TCGA-WB-A81D-01A	TMEM178B	chr7	140912504	+	DPP6	chr7	154561127	+
5CDS-intron	ENST00000565468	ENST00000377770		TCGA	LD	PCPG	TCGA-WB-A81D-01A	TMEM178B	chr7	140912504	+	DPP6	chr7	154561127	+
5CDS-intron	ENST00000565468	ENST00000332007		TCGA	LD	PCPG	TCGA-WB-A81D-01A	TMEM178B	chr7	140912504	+	DPP6	chr7	154561127	+
5CDS-intron	ENST00000565468	ENST00000496611		TCGA	LD	PCPG	TCGA-WB-A81D-01A	TMEM178B	chr7	140912504	+	DPP6	chr7	154561127	+
5CDS-intron	ENST00000565468	ENST00000427557		TCGA	LD	PCPG	TCGA-WB-A81D-01A	TMEM178B	chr7	140912504	+	DPP6	chr7	154561127	+
intron-5UTR	ENST00000380599	ENST00000254066		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000380599	ENST00000394089		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000380599	ENST00000425707		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-intron	ENST00000380599	ENST00000394086		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-intron	ENST00000380599	ENST00000394081		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-intron	ENST00000380599	ENST00000420042		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000311403	ENST00000254066		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000311403	ENST00000394089		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000311403	ENST00000425707		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-intron	ENST00000311403	ENST00000394086		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-intron	ENST00000311403	ENST00000394081		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
intron-intron	ENST00000311403	ENST00000420042		TCGA	LD	PCPG	TCGA-WB-A81E-01A	ZBTB4	chr17	7365738	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000583610	ENST00000367660		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000583610	ENST00000461027		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000394294	ENST00000367660		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000394294	ENST00000461027		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000264658	ENST00000367660		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000264658	ENST00000461027		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000577399	ENST00000367660		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-5UTR	ENST00000577399	ENST00000461027		TCGA	LD	PCPG	TCGA-WB-A81F-01A	FBXL20	chr17	37499433	-	ABRACL	chr6	139355292	+
5CDS-intron	ENST00000234961	ENST00000602725		TCGA	LD	PCPG	TCGA-WB-A81F-01A	OPRD1	chr1	29139122	+	PTP4A2	chr1	32385259	-
5CDS-5UTR	ENST00000234961	ENST00000344035		TCGA	LD	PCPG	TCGA-WB-A81F-01A	OPRD1	chr1	29139122	+	PTP4A2	chr1	32385259	-
5CDS-5UTR	ENST00000234961	ENST00000356536		TCGA	LD	PCPG	TCGA-WB-A81F-01A	OPRD1	chr1	29139122	+	PTP4A2	chr1	32385259	-
5CDS-intron	ENST00000234961	ENST00000457805		TCGA	LD	PCPG	TCGA-WB-A81F-01A	OPRD1	chr1	29139122	+	PTP4A2	chr1	32385259	-
5CDS-intron	ENST00000234961	ENST00000470404		TCGA	LD	PCPG	TCGA-WB-A81F-01A	OPRD1	chr1	29139122	+	PTP4A2	chr1	32385259	-
5CDS-5UTR	ENST00000234961	ENST00000526960		TCGA	LD	PCPG	TCGA-WB-A81F-01A	OPRD1	chr1	29139122	+	PTP4A2	chr1	32385259	-
intron-intron	ENST00000405409	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000405409	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000405409	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000405409	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000405409	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000405409	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000414461	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000414461	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000414461	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000414461	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000414461	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000414461	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000449924	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000449924	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000449924	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000449924	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000449924	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000449924	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000262829	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000262829	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000262829	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000262829	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000262829	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000262829	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000397303	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000397303	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000397303	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000397303	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000397303	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000397303	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5UTR-intron	ENST00000359369	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5UTR-intron	ENST00000359369	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5UTR-intron	ENST00000359369	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5UTR-intron	ENST00000359369	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5UTR-intron	ENST00000359369	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5UTR-intron	ENST00000359369	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000416721	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000416721	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000416721	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000416721	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000416721	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
intron-intron	ENST00000416721	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5CDS-intron	ENST00000438146	ENST00000401702		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5CDS-intron	ENST00000438146	ENST00000397326		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5CDS-intron	ENST00000438146	ENST00000397328		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5CDS-intron	ENST00000438146	ENST00000359787		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5CDS-intron	ENST00000438146	ENST00000406324		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
5CDS-intron	ENST00000438146	ENST00000472240		TCGA	LD	PCPG	TCGA-WB-A81F-01A	RBFOX2	chr22	36334895	-	MB	chr22	36033255	-
3UTR-3UTR	ENST00000335350	ENST00000381395		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000381406		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000416167		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000300632		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000434045		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000381392		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000381389		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000335350	ENST00000418738		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000381395		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000381406		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000416167		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000300632		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000434045		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000381392		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000381389		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
3UTR-3UTR	ENST00000373192	ENST00000418738		TCGA	LD	PCPG	TCGA-WB-A81F-01A	UNC5B	chr10	73059821	+	IGF2	chr11	2154007	-
5UTR-3UTR	ENST00000392975	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000392975	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000392975	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000392975	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000392975	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000392975	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000360793	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000360793	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000360793	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000360793	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000360793	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000360793	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000584031	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000584031	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000584031	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000584031	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000584031	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000584031	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000392976	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000392976	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000392976	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000392976	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000392976	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000392976	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582297	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582297	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582297	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582297	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582297	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582297	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581573	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581573	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581573	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581573	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581573	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581573	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000448884	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000448884	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000448884	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000448884	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000448884	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000448884	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582034	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582034	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582034	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582034	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582034	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582034	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542042	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542042	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542042	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542042	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000542042	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000542042	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581163	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581163	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581163	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581163	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000581163	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000581163	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582997	ENST00000313949		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582997	ENST00000371098		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582997	ENST00000371075		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582997	ENST00000371100		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000371099		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000371102		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000582997	ENST00000464624		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000306120		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000371095		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000371085		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000354359		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000265620		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000306090		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
intron-intron	ENST00000582997	ENST00000371081		TCGA	LD	PCPG	TCGA-WB-A81I-01A	CYB561	chr17	61518088	-	GNAS	chr20	57470667	+
Frame-shit	ENST00000359429	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000359429	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000359429	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000359429	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000359429	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000436630	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000436630	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000436630	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000436630	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000436630	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000454822	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000454822	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000454822	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000454822	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000454822	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000429921	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000429921	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000429921	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000429921	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000429921	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000540255	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000540255	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000540255	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000540255	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000540255	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000429907	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000429907	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000429907	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000429907	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000429907	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000445268	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000445268	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000445268	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000445268	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000445268	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000452025	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000452025	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000452025	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000452025	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000452025	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000438204	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000438204	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-3CDS	ENST00000438204	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000438204	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5UTR-intron	ENST00000438204	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
intron-3CDS	ENST00000411934	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
intron-3CDS	ENST00000411934	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
intron-3CDS	ENST00000411934	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
intron-intron	ENST00000411934	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
intron-intron	ENST00000411934	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000435437	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000435437	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000435437	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000435437	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000435437	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000354506	ENST00000264808		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000354506	ENST00000428209		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
Frame-shit	ENST00000354506	ENST00000515109		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000354506	ENST00000506065		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
5CDS-intron	ENST00000354506	ENST00000394435		TCGA	LD	PCPG	TCGA-WB-A81J-01A	RPE	chr2	210867507	+	PRDM5	chr4	121742500	-
In-frame	ENST00000524717	ENST00000358791		TCGA	LD	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49458303	+
5CDS-intron	ENST00000524717	ENST00000262591		TCGA	LD	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49458303	+
5CDS-intron	ENST00000524717	ENST00000371608		TCGA	LD	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49458303	+
5CDS-intron	ENST00000524717	ENST00000609336		TCGA	LD	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49458303	+
5CDS-intron	ENST00000524717	ENST00000485049		TCGA	LD	PCPG	TCGA-WB-A81K-01A	MAML2	chr11	95825056	-	BCAS4	chr20	49458303	+
Frame-shit	ENST00000332149	ENST00000398907		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398897		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398911		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000453032		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000429727		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398897		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398911		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000453032		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000429727		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
In-frame	ENST00000458356	ENST00000398907		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
In-frame	ENST00000458356	ENST00000398905		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
In-frame	ENST00000458356	ENST00000288319		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398897		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398911		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000453032		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000429727		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PCPG	TCGA-WB-A81K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
3UTR-intron	ENST00000602240	ENST00000389341		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000342301		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000533720		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000526816		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000529067		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000560558		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000560398		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-intron	ENST00000602240	ENST00000529952		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
3UTR-5UTR	ENST00000602240	ENST00000524801		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000389341		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000342301		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000533720		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000526816		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000529067		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000560558		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000560398		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000204005	ENST00000529952		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-5UTR	ENST00000204005	ENST00000524801		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000389341		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000342301		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000533720		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000526816		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000529067		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000560558		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000560398		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-intron	ENST00000545697	ENST00000529952		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5UTR-5UTR	ENST00000545697	ENST00000524801		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000389341		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000342301		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000533720		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000526816		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000529067		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000560558		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000560398		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-intron	ENST00000308370	ENST00000529952		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
5CDS-5UTR	ENST00000308370	ENST00000524801		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000389341		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000342301		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000533720		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000526816		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000529067		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000560558		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000560398		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000396819	ENST00000529952		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-5UTR	ENST00000396819	ENST00000524801		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000389341		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000342301		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000533720		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000526816		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000529067		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000560558		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000560398		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-intron	ENST00000243562	ENST00000529952		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-5UTR	ENST00000243562	ENST00000524801		TCGA	LD	PCPG	TCGA-WB-A81S-01A	LTBP4	chr19	41106083	+	POU2F2	chr19	42664544	-
intron-3CDS	ENST00000539935	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000539935	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000539935	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000539935	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000539935	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000539935	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000539935	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000539935	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000539935	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000539935	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000539935	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000539935	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000539935	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000360283	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000360283	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000360283	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000360283	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000360283	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000360283	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000360283	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000360283	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000360283	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000360283	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000360283	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000360283	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000360283	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000534999	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000534999	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000534999	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000534999	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000534999	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000534999	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000534999	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000534999	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000534999	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000534999	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000534999	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000534999	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000534999	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000397327	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000397327	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000397327	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000397327	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000397327	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000397327	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000397327	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000397327	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000397327	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000397327	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000397327	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000397327	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000397327	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000427385	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000427385	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000427385	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000427385	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000427385	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000427385	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000427385	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000427385	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000427385	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000427385	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000427385	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000427385	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000427385	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000201943	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000201943	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000201943	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000201943	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000201943	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000201943	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000201943	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000201943	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000201943	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000201943	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000201943	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000201943	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000201943	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000475848	ENST00000395957		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000475848	ENST00000395958		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000475848	ENST00000457309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000475848	ENST00000395956		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000475848	ENST00000353245		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000475848	ENST00000522542		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000475848	ENST00000521309		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000475848	ENST00000522819		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000475848	ENST00000395953		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000475848	ENST00000395948		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000475848	ENST00000395951		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000475848	ENST00000419477		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000475848	ENST00000492736		TCGA	LD	PCPG	TCGA-WB-A81W-01A	CACNB4	chr2	152828059	-	YWHAZ	chr8	101937267	-
In-frame	ENST00000328736	ENST00000554922		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
In-frame	ENST00000328736	ENST00000352093		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
In-frame	ENST00000328736	ENST00000380664		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
5CDS-intron	ENST00000328736	ENST00000553320		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
Frame-shit	ENST00000556564	ENST00000554922		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
Frame-shit	ENST00000556564	ENST00000352093		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
Frame-shit	ENST00000556564	ENST00000380664		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
5CDS-intron	ENST00000556564	ENST00000553320		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
5UTR-3CDS	ENST00000554628	ENST00000554922		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
5UTR-3CDS	ENST00000554628	ENST00000352093		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
5UTR-3CDS	ENST00000554628	ENST00000380664		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
5UTR-intron	ENST00000554628	ENST00000553320		TCGA	LD	PCPG	TCGA-WB-A81W-01A	PTPN21	chr14	88962757	-	EML5	chr14	89110855	-
Frame-shit	ENST00000360839	ENST00000230993		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000360839	ENST00000506757		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000360839	ENST00000506545		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000360839	ENST00000432095		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000360839	ENST00000507527		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000297183	ENST00000230993		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000297183	ENST00000506757		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000297183	ENST00000506545		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000297183	ENST00000432095		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000297183	ENST00000507527		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394723	ENST00000230993		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394723	ENST00000506757		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394723	ENST00000506545		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394723	ENST00000432095		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394723	ENST00000507527		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394722	ENST00000230993		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394722	ENST00000506757		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394722	ENST00000506545		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394722	ENST00000432095		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
Frame-shit	ENST00000394722	ENST00000507527		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000462121	ENST00000230993		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000462121	ENST00000506757		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000462121	ENST00000506545		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000462121	ENST00000432095		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000462121	ENST00000507527		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000544120	ENST00000230993		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000544120	ENST00000506757		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000544120	ENST00000506545		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000544120	ENST00000432095		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
intron-3CDS	ENST00000544120	ENST00000507527		TCGA	LD	PCPG	TCGA-WB-A820-01A	ANKHD1	chr5	139781858	+	SLC4A9	chr5	139741393	+
In-frame	ENST00000380376	ENST00000286688		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	ACER2	chr9	19435082	+	C8orf37	chr8	96276002	-
In-frame	ENST00000340967	ENST00000286688		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	ACER2	chr9	19435082	+	C8orf37	chr8	96276002	-
intron-intron	ENST00000464611	ENST00000514455		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000511566		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000376817		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000464611	ENST00000512805		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000504726		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000511900		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000456394		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000505461		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000514455		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000511566		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000376817		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000331789	ENST00000512805		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000504726		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000511900		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000456394		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000505461		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
In-frame	ENST00000409979	ENST00000409262		TCGA	RV	PRAD	TCGA-EJ-7315-01A	AGFG1	chr2	228356356	+	TET3	chr2	74320029	+
In-frame	ENST00000310078	ENST00000409262		TCGA	RV	PRAD	TCGA-EJ-7315-01A	AGFG1	chr2	228356356	+	TET3	chr2	74320029	+
In-frame	ENST00000409315	ENST00000409262		TCGA	RV	PRAD	TCGA-EJ-7315-01A	AGFG1	chr2	228356356	+	TET3	chr2	74320029	+
In-frame	ENST00000373671	ENST00000409262		TCGA	RV	PRAD	TCGA-EJ-7315-01A	AGFG1	chr2	228356356	+	TET3	chr2	74320029	+
In-frame	ENST00000409171	ENST00000409262		TCGA	RV	PRAD	TCGA-EJ-7315-01A	AGFG1	chr2	228356356	+	TET3	chr2	74320029	+
intron-3CDS	ENST00000486932	ENST00000409262		TCGA	RV	PRAD	TCGA-EJ-7315-01A	AGFG1	chr2	228356356	+	TET3	chr2	74320029	+
5CDS-5UTR	ENST00000361915	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361915	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000361915	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361915	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000294724	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000294724	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000294724	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000294724	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370165	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370165	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000370165	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370165	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370163	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370163	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000370163	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370163	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361302	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361302	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000361302	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361302	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370161	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370161	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000370161	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000370161	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361522	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361522	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000361522	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-5UTR	ENST00000361522	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
intron-5UTR	ENST00000477753	ENST00000228945		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
intron-5UTR	ENST00000477753	ENST00000541644		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
intron-intron	ENST00000477753	ENST00000539131		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
intron-5UTR	ENST00000477753	ENST00000541546		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	AGL	chr1	100382287	+	ARHGDIB	chr12	15103658	-
5CDS-intron	ENST00000336498	ENST00000493559		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
5CDS-intron	ENST00000336498	ENST00000608872		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
5CDS-intron	ENST00000336498	ENST00000340778		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
5CDS-intron	ENST00000414545	ENST00000493559		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
5CDS-intron	ENST00000414545	ENST00000608872		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
5CDS-intron	ENST00000414545	ENST00000340778		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
intron-intron	ENST00000510076	ENST00000493559		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
intron-intron	ENST00000510076	ENST00000608872		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
intron-intron	ENST00000510076	ENST00000340778		TCGA	RV	PRAD	TCGA-KK-A8IG-01A	ARHGAP10	chr4	148993926	+	FBXW2	chr9	123550464	-
5CDS-5UTR	ENST00000311380	ENST00000375400		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000311380	ENST00000375398		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000311380	ENST00000355867		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000311380	ENST00000535393		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000311380	ENST00000460007		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000311380	ENST00000538146		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000375250	ENST00000375400		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000375250	ENST00000375398		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375250	ENST00000355867		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375250	ENST00000535393		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375250	ENST00000460007		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375250	ENST00000538146		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5UTR-5UTR	ENST00000492028	ENST00000375400		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5UTR-5UTR	ENST00000492028	ENST00000375398		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5UTR-intron	ENST00000492028	ENST00000355867		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5UTR-intron	ENST00000492028	ENST00000535393		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5UTR-intron	ENST00000492028	ENST00000460007		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5UTR-intron	ENST00000492028	ENST00000538146		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000344936	ENST00000375400		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000344936	ENST00000375398		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000344936	ENST00000355867		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000344936	ENST00000535393		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000344936	ENST00000460007		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000344936	ENST00000538146		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000396144	ENST00000375400		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000396144	ENST00000375398		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000396144	ENST00000355867		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000396144	ENST00000535393		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000396144	ENST00000460007		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000396144	ENST00000538146		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000375245	ENST00000375400		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-5UTR	ENST00000375245	ENST00000375398		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375245	ENST00000355867		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375245	ENST00000535393		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375245	ENST00000460007		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
5CDS-intron	ENST00000375245	ENST00000538146		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	ARHGAP12	chr10	32115232	-	SVIL	chr10	29975580	-
intron-5UTR	ENST00000395184	ENST00000395169		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000395184	ENST00000359221		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000395184	ENST00000361569		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000395184	ENST00000395166		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000395184	ENST00000449047		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000395184	ENST00000395161		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000395184	ENST00000513839		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000395184	ENST00000395157		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000395184	ENST00000395160		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000395169		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000359221		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000361569		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000395166		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000449047		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000395161		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000503995	ENST00000513839		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000503995	ENST00000395157		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000503995	ENST00000395160		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000395169		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000359221		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000361569		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000395166		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000449047		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000395161		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000506421	ENST00000513839		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000506421	ENST00000395157		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000506421	ENST00000395160		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000395169		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000359221		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000361569		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000395166		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000449047		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000395161		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000395183	ENST00000513839		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000395183	ENST00000395157		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000395183	ENST00000395160		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000395169		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000359221		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000361569		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000395166		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000449047		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000395161		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000264343	ENST00000513839		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000264343	ENST00000395157		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000264343	ENST00000395160		TCGA	RV	PRAD	TCGA-KK-A6E0-01A	ARHGAP24	chr4	86700118	+	MAPK10	chr4	87115560	-
5UTR-3CDS	ENST00000481646	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000481646	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-intron	ENST00000481646	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000469044	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000469044	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5CDS-intron	ENST00000469044	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000491704	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000491704	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-intron	ENST00000491704	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000358441	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000358441	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-intron	ENST00000358441	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000489213	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000489213	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-intron	ENST00000489213	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000461822	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000461822	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5CDS-intron	ENST00000461822	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000485396	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000485396	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-intron	ENST00000485396	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000471453	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-3CDS	ENST00000471453	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5UTR-intron	ENST00000471453	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000470821	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000470821	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5CDS-intron	ENST00000470821	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000393058	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000393058	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5CDS-intron	ENST00000393058	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000538260	ENST00000402696		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
In-frame	ENST00000538260	ENST00000264998		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5CDS-intron	ENST00000538260	ENST00000475382		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ARMC8	chr3	137906441	+	TF	chr3	133483026	+
5CDS-5UTR	ENST00000317697	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000317697	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000317697	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000317697	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536549	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536549	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536549	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000536549	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
intron-5UTR	ENST00000537754	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
intron-5UTR	ENST00000537754	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
intron-5UTR	ENST00000537754	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
intron-intron	ENST00000537754	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536953	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536953	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536953	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000536953	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000539528	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000539528	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000539528	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000539528	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000535055	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000535055	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000535055	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000535055	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536071	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536071	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000536071	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000536071	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000540782	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000540782	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000540782	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000540782	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000535988	ENST00000331886		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000535988	ENST00000394147		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000535988	ENST00000551156		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-intron	ENST00000535988	ENST00000549079		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ASB8	chr12	48547151	-	DGKA	chr12	56330207	+
5CDS-5UTR	ENST00000435504	ENST00000295148		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
5CDS-5UTR	ENST00000435504	ENST00000406895		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000336112	ENST00000295148		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000336112	ENST00000406895		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000272341	ENST00000295148		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000272341	ENST00000406895		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000404843	ENST00000295148		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000404843	ENST00000406895		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000497092	ENST00000295148		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-5UTR	ENST00000497092	ENST00000406895		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	ASXL2	chr2	26058407	-	C2orf44	chr2	24262382	-
intron-3CDS	ENST00000368487	ENST00000292205		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
intron-3CDS	ENST00000368487	ENST00000368474		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
intron-3CDS	ENST00000368487	ENST00000368471		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
intron-intron	ENST00000368487	ENST00000471068		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
Frame-shit	ENST00000368489	ENST00000292205		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
Frame-shit	ENST00000368489	ENST00000368474		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
Frame-shit	ENST00000368489	ENST00000368471		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
5CDS-intron	ENST00000368489	ENST00000471068		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
3UTR-3CDS	ENST00000426445	ENST00000292205		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
3UTR-3CDS	ENST00000426445	ENST00000368474		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
3UTR-3CDS	ENST00000426445	ENST00000368471		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
3UTR-intron	ENST00000426445	ENST00000471068		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
Frame-shit	ENST00000341822	ENST00000292205		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
Frame-shit	ENST00000341822	ENST00000368474		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
Frame-shit	ENST00000341822	ENST00000368471		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
5CDS-intron	ENST00000341822	ENST00000471068		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP8B2	chr1	154313538	+	ADAR	chr1	154569743	-
intron-intron	ENST00000589651	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589651	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589651	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589651	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589651	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589651	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
intron-intron	ENST00000589651	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000270233	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7209-01A	BCAM	chr19	45324677	+	PLAT	chr8	42051245	-
In-frame	ENST00000421745	ENST00000356458		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BIRC6	chr2	32679010	+	EML6	chr2	55071184	+
5CDS-intron	ENST00000421745	ENST00000490828		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BIRC6	chr2	32679010	+	EML6	chr2	55071184	+
Frame-shit	ENST00000216267	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000404034	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000404760	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000457780	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000542442	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000342989	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
intron-3CDS	ENST00000459821	ENST00000331238		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	BRD1	chr22	50197852	-	RTN4RL1	chr17	1841102	-
5UTR-3CDS	ENST00000258761	ENST00000300738		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000258761	ENST00000423050		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000258761	ENST00000534285		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000258761	ENST00000537197		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000258761	ENST00000528470		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-3CDS	ENST00000433922	ENST00000300738		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000433922	ENST00000423050		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000433922	ENST00000534285		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000433922	ENST00000537197		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000433922	ENST00000528470		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
3UTR-3CDS	ENST00000432311	ENST00000300738		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
3UTR-intron	ENST00000432311	ENST00000423050		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
3UTR-intron	ENST00000432311	ENST00000534285		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
3UTR-intron	ENST00000432311	ENST00000537197		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
3UTR-intron	ENST00000432311	ENST00000528470		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-3CDS	ENST00000452975	ENST00000300738		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000452975	ENST00000423050		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000452975	ENST00000534285		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000452975	ENST00000537197		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000452975	ENST00000528470		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-3CDS	ENST00000405202	ENST00000300738		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000405202	ENST00000423050		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000405202	ENST00000534285		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000405202	ENST00000537197		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5UTR-intron	ENST00000405202	ENST00000528470		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
intron-3CDS	ENST00000407633	ENST00000300738		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
intron-intron	ENST00000407633	ENST00000423050		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
intron-intron	ENST00000407633	ENST00000534285		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
intron-intron	ENST00000407633	ENST00000537197		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
intron-intron	ENST00000407633	ENST00000528470		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	BZW2	chr7	16685913	+	RRM1	chr11	4127276	+
5CDS-5UTR	ENST00000378618	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000378618	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000378618	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000536126	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000536126	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5UTR-5UTR	ENST00000536126	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000278460	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000278460	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000278460	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000395460	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000395460	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000395460	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000378615	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000378615	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000378615	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000543718	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000543718	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
5CDS-5UTR	ENST00000543718	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000527268	ENST00000304271		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000527268	ENST00000533310		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
intron-5UTR	ENST00000527268	ENST00000530166		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	C11orf49	chr11	47008861	+	C11orf24	chr11	68035719	-
intron-3CDS	ENST00000602758	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602758	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602758	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602758	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-5UTR	ENST00000602758	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602719	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602719	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602719	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602719	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5CDS-5UTR	ENST00000602719	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602583	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602583	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602583	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-3CDS	ENST00000602583	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
intron-5UTR	ENST00000602583	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602675	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602675	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602675	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602675	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-5UTR	ENST00000602675	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000284245	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000284245	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000284245	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000284245	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5CDS-5UTR	ENST00000284245	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602914	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602914	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602914	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
Frame-shit	ENST00000602914	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5CDS-5UTR	ENST00000602914	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602766	ENST00000308448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602766	ENST00000328142		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602766	ENST00000400215		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-3CDS	ENST00000602766	ENST00000541004		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-5UTR	ENST00000602766	ENST00000495903		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	C16orf74	chr16	85768796	-	ATAD1	chr10	89552512	-
5UTR-5UTR	ENST00000486765	ENST00000366760		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5UTR-5UTR	ENST00000486765	ENST00000315781		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5UTR-5UTR	ENST00000486765	ENST00000366759		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5UTR-intron	ENST00000486765	ENST00000480897		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5CDS-5UTR	ENST00000361605	ENST00000366760		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5CDS-5UTR	ENST00000361605	ENST00000315781		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5CDS-5UTR	ENST00000361605	ENST00000366759		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
5CDS-intron	ENST00000361605	ENST00000480897		TCGA	RV	PRAD	TCGA-EJ-7321-01A	C1orf174	chr1	3816736	-	SNAP47	chr1	227946696	+
intron-3CDS	ENST00000400919	ENST00000367214		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
intron-3CDS	ENST00000400919	ENST00000367212		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
intron-3CDS	ENST00000400919	ENST00000332127		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
intron-3CDS	ENST00000400919	ENST00000545588		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
intron-3CDS	ENST00000400919	ENST00000367210		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
intron-intron	ENST00000400919	ENST00000466470		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378546	ENST00000367214		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378546	ENST00000367212		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378546	ENST00000332127		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378546	ENST00000545588		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378546	ENST00000367210		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
5CDS-intron	ENST00000378546	ENST00000466470		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000487186	ENST00000367214		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000487186	ENST00000367212		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000487186	ENST00000332127		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000487186	ENST00000545588		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000487186	ENST00000367210		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
5CDS-intron	ENST00000487186	ENST00000466470		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378545	ENST00000367214		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378545	ENST00000367212		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378545	ENST00000332127		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378545	ENST00000545588		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
Frame-shit	ENST00000378545	ENST00000367210		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
5CDS-intron	ENST00000378545	ENST00000466470		TCGA	RV	PRAD	TCGA-G9-6353-01A	C1orf86	chr1	2120987	-	ZC3H11A	chr1	203797427	+
3UTR-3CDS	ENST00000433674	ENST00000371121		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000433674	ENST00000371122		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000433674	ENST00000371123		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-5UTR	ENST00000433674	ENST00000478420		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000295006	ENST00000371121		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000295006	ENST00000371122		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000295006	ENST00000371123		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-5UTR	ENST00000295006	ENST00000478420		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000474026	ENST00000371121		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000474026	ENST00000371122		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-3CDS	ENST00000474026	ENST00000371123		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
3UTR-5UTR	ENST00000474026	ENST00000478420		TCGA	RV	PRAD	TCGA-CH-5761-01A	CAPN2	chr1	223963545	+	SMARCA1	chrX	128652424	-
5CDS-intron	ENST00000246533	ENST00000504487		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000246533	ENST00000428116		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000246533	ENST00000389609		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000246533	ENST00000502801		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000246533	ENST00000508236		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000589146	ENST00000504487		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000589146	ENST00000428116		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000589146	ENST00000389609		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000589146	ENST00000502801		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000589146	ENST00000508236		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000587718	ENST00000504487		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000587718	ENST00000428116		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000587718	ENST00000389609		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000587718	ENST00000502801		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000587718	ENST00000508236		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000590874	ENST00000504487		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000590874	ENST00000428116		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000590874	ENST00000389609		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000590874	ENST00000502801		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000590874	ENST00000508236		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000588815	ENST00000504487		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000588815	ENST00000428116		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000588815	ENST00000389609		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000588815	ENST00000502801		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
5CDS-intron	ENST00000588815	ENST00000508236		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000588780	ENST00000504487		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000588780	ENST00000428116		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000588780	ENST00000389609		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000588780	ENST00000502801		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
intron-intron	ENST00000588780	ENST00000508236		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	CAPNS1	chr19	36641254	+	CCDC149	chr4	24981770	-
Frame-shit	ENST00000264122	ENST00000421412		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000264122	ENST00000295980		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000264122	ENST00000383814		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000264122	ENST00000454190		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
intron-3CDS	ENST00000407712	ENST00000421412		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
intron-5UTR	ENST00000407712	ENST00000295980		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
intron-5UTR	ENST00000407712	ENST00000383814		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
intron-5UTR	ENST00000407712	ENST00000454190		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
In-frame	ENST00000394027	ENST00000421412		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000394027	ENST00000295980		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000394027	ENST00000383814		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000394027	ENST00000454190		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
Frame-shit	ENST00000403724	ENST00000421412		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000403724	ENST00000295980		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000403724	ENST00000383814		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000403724	ENST00000454190		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
Frame-shit	ENST00000405772	ENST00000421412		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000405772	ENST00000295980		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000405772	ENST00000383814		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000405772	ENST00000454190		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
Frame-shit	ENST00000545639	ENST00000421412		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000545639	ENST00000295980		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000545639	ENST00000383814		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
5CDS-5UTR	ENST00000545639	ENST00000454190		TCGA	RV	PRAD	TCGA-G9-6339-01A	CBLB	chr3	105572258	-	IL17RE	chr3	9944574	+
Frame-shit	ENST00000264122	ENST00000295746		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000264122	ENST00000491772		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000264122	ENST00000487834		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
intron-3CDS	ENST00000407712	ENST00000295746		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
intron-5UTR	ENST00000407712	ENST00000491772		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
intron-5UTR	ENST00000407712	ENST00000487834		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
Frame-shit	ENST00000394027	ENST00000295746		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000394027	ENST00000491772		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000394027	ENST00000487834		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
Frame-shit	ENST00000403724	ENST00000295746		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000403724	ENST00000491772		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000403724	ENST00000487834		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
Frame-shit	ENST00000405772	ENST00000295746		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000405772	ENST00000491772		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000405772	ENST00000487834		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
In-frame	ENST00000545639	ENST00000295746		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000545639	ENST00000491772		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
5CDS-5UTR	ENST00000545639	ENST00000487834		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CBLB	chr3	105572258	-	KIAA1524	chr3	108304059	-
intron-intron	ENST00000206423	ENST00000360359		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000206423	ENST00000535627		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000206423	ENST00000470698		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000439685	ENST00000360359		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000439685	ENST00000535627		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000439685	ENST00000470698		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000475181	ENST00000360359		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000475181	ENST00000535627		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000475181	ENST00000470698		TCGA	RV	PRAD	TCGA-CH-5739-01A	CCDC80	chr3	112324113	-	ANKS1A	chr6	34977682	+
intron-3CDS	ENST00000511642	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000511642	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000511642	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000511642	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000511642	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000511642	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000415497	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000415497	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000415497	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000415497	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000415497	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000415497	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000372988	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000372988	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000372988	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000372988	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000372988	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000372988	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000510503	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000510503	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000510503	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000510503	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000510503	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000510503	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000511686	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-3CDS	ENST00000511686	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000511686	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000511686	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000511686	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
5UTR-intron	ENST00000511686	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000372991	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000372991	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372991	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372991	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372991	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372991	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000372987	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000372987	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372987	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372987	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372987	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000372987	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000414200	ENST00000253861		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-3CDS	ENST00000414200	ENST00000539845		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000414200	ENST00000393161		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000414200	ENST00000545148		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000414200	ENST00000460346		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
intron-intron	ENST00000414200	ENST00000541309		TCGA	RV	PRAD	TCGA-EJ-8474-01A	CCND3	chr6	42016239	-	EXOC4	chr7	133682245	+
In-frame	ENST00000366767	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000366767	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000366767	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000366767	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
In-frame	ENST00000366769	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000366769	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000366769	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000366769	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
In-frame	ENST00000366764	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000366764	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000366764	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000366764	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
In-frame	ENST00000334218	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000334218	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000334218	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000334218	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
In-frame	ENST00000366766	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000366766	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000366766	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000366766	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
In-frame	ENST00000535525	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000535525	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000535525	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000535525	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
In-frame	ENST00000366765	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-intron	ENST00000366765	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-5UTR	ENST00000366765	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5CDS-3UTR	ENST00000366765	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
intron-3CDS	ENST00000488131	ENST00000397097		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
intron-intron	ENST00000488131	ENST00000343776		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
intron-5UTR	ENST00000488131	ENST00000608949		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
intron-3UTR	ENST00000488131	ENST00000465266		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CDC42BPA	chr1	227504706	-	ZNF678	chr1	227770215	+
5UTR-3CDS	ENST00000295324	ENST00000389617		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CDC42EP3	chr2	37898569	-	GXYLT2	chr3	72957518	+
In-frame	ENST00000570137	ENST00000562982		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000570137	ENST00000305904		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000570137	ENST00000568035		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
5CDS-intron	ENST00000570137	ENST00000570222		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000562812	ENST00000562982		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000562812	ENST00000305904		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000562812	ENST00000568035		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
5CDS-intron	ENST00000562812	ENST00000570222		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000566173	ENST00000562982		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000566173	ENST00000305904		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000566173	ENST00000568035		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
5CDS-intron	ENST00000566173	ENST00000570222		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000563890	ENST00000562982		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000563890	ENST00000305904		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
In-frame	ENST00000563890	ENST00000568035		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
5CDS-intron	ENST00000563890	ENST00000570222		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
intron-3CDS	ENST00000562753	ENST00000562982		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
intron-3CDS	ENST00000562753	ENST00000305904		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
intron-3CDS	ENST00000562753	ENST00000568035		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
intron-intron	ENST00000562753	ENST00000570222		TCGA	RV	PRAD	TCGA-HC-8264-01B	CDYL2	chr16	80838047	-	DYNLRB2	chr16	80577173	+
intron-5UTR	ENST00000278935	ENST00000227667		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CEP164	chr11	117198924	+	APOC3	chr11	116701286	+
intron-5UTR	ENST00000278935	ENST00000375345		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CEP164	chr11	117198924	+	APOC3	chr11	116701286	+
intron-3UTR	ENST00000278935	ENST00000470144		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CEP164	chr11	117198924	+	APOC3	chr11	116701286	+
intron-5UTR	ENST00000533706	ENST00000227667		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CEP164	chr11	117198924	+	APOC3	chr11	116701286	+
intron-5UTR	ENST00000533706	ENST00000375345		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CEP164	chr11	117198924	+	APOC3	chr11	116701286	+
intron-3UTR	ENST00000533706	ENST00000470144		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CEP164	chr11	117198924	+	APOC3	chr11	116701286	+
5UTR-5UTR	ENST00000366542	ENST00000340979		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366542	ENST00000368131		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366542	ENST00000368132		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366542	ENST00000295809		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366542	ENST00000430894		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366542	ENST00000359709		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-intron	ENST00000366542	ENST00000448393		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366543	ENST00000340979		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366543	ENST00000368131		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366543	ENST00000368132		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366543	ENST00000295809		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366543	ENST00000430894		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366543	ENST00000359709		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-intron	ENST00000366543	ENST00000448393		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366544	ENST00000340979		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366544	ENST00000368131		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366544	ENST00000368132		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366544	ENST00000295809		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366544	ENST00000430894		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-5UTR	ENST00000366544	ENST00000359709		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
5UTR-intron	ENST00000366544	ENST00000448393		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000468254	ENST00000340979		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000468254	ENST00000368131		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000468254	ENST00000368132		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000468254	ENST00000295809		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000468254	ENST00000430894		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000468254	ENST00000359709		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-intron	ENST00000468254	ENST00000448393		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000481987	ENST00000340979		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000481987	ENST00000368131		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000481987	ENST00000368132		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000481987	ENST00000295809		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000481987	ENST00000430894		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000481987	ENST00000359709		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-intron	ENST00000481987	ENST00000448393		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000490813	ENST00000340979		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000490813	ENST00000368131		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000490813	ENST00000368132		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000490813	ENST00000295809		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000490813	ENST00000430894		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-5UTR	ENST00000490813	ENST00000359709		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
intron-intron	ENST00000490813	ENST00000448393		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	CEP170	chr1	243418342	-	IFI16	chr1	158979793	+
In-frame	ENST00000264982	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000264982	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
In-frame	ENST00000542237	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000542237	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
In-frame	ENST00000489254	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000489254	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
Frame-shit	ENST00000484888	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000484888	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000481834	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-intron	ENST00000481834	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000478673	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-intron	ENST00000478673	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000464035	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-intron	ENST00000464035	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
In-frame	ENST00000216264	ENST00000360835		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
In-frame	ENST00000216264	ENST00000290460		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000216264	ENST00000470433		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
In-frame	ENST00000541677	ENST00000360835		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
In-frame	ENST00000541677	ENST00000290460		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000541677	ENST00000470433		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
intron-3CDS	ENST00000471929	ENST00000360835		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
intron-3CDS	ENST00000471929	ENST00000290460		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
intron-intron	ENST00000471929	ENST00000470433		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	CERK	chr22	47103740	-	SCUBE1	chr22	43654341	-
3UTR-5UTR	ENST00000483271	ENST00000541742		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
3UTR-5UTR	ENST00000483271	ENST00000490107		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
3UTR-5UTR	ENST00000483271	ENST00000388985		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
3UTR-intron	ENST00000483271	ENST00000366517		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
3UTR-intron	ENST00000483271	ENST00000403792		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000366513	ENST00000541742		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000366513	ENST00000490107		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000366513	ENST00000388985		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000366513	ENST00000366517		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000366513	ENST00000403792		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000366512	ENST00000541742		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000366512	ENST00000490107		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-5UTR	ENST00000366512	ENST00000388985		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000366512	ENST00000366517		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
5UTR-intron	ENST00000366512	ENST00000403792		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	CNST	chr1	246729965	+	SMYD3	chr1	246518396	-
In-frame	ENST00000380518	ENST00000326648		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
5CDS-intron	ENST00000380518	ENST00000416172		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
5CDS-intron	ENST00000380518	ENST00000559364		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
intron-3CDS	ENST00000493991	ENST00000326648		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
intron-intron	ENST00000493991	ENST00000416172		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
intron-intron	ENST00000493991	ENST00000559364		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
In-frame	ENST00000337299	ENST00000326648		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
5CDS-intron	ENST00000337299	ENST00000416172		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
5CDS-intron	ENST00000337299	ENST00000559364		TCGA	RV	PRAD	TCGA-EJ-5503-01A	COL2A1	chr12	48398020	-	ZNF609	chr15	64915026	+
intron-5UTR	ENST00000430624	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000432329	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
intron-5UTR	ENST00000353267	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
intron-5UTR	ENST00000536726	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000374397	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000539789	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
intron-5UTR	ENST00000451164	ENST00000362032		TCGA	RV	PRAD	TCGA-M7-A720-01A	CREB1	chr2	208425884	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000433211	ENST00000361781		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000433211	ENST00000429490		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000433211	ENST00000492601		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000433211	ENST00000361543		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-5UTR	ENST00000373744	ENST00000361781		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000373744	ENST00000429490		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000373744	ENST00000492601		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000373744	ENST00000361543		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-5UTR	ENST00000545309	ENST00000361781		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000545309	ENST00000429490		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000545309	ENST00000492601		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000545309	ENST00000361543		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
intron-5UTR	ENST00000373735	ENST00000361781		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
intron-intron	ENST00000373735	ENST00000429490		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
intron-intron	ENST00000373735	ENST00000492601		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
intron-intron	ENST00000373735	ENST00000361543		TCGA	RV	PRAD	TCGA-G9-6332-01A	CTNNA3	chr10	68979365	-	SGMS1	chr10	52279681	-
5CDS-intron	ENST00000230895	ENST00000437840		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000497454		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000444031		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000494749		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000413136		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000549377		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000473419		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000452084		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000550374		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000480780		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000416548		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000548778		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000383204		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000487403		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000230895	ENST00000547127		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000437840		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000497454		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000444031		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000494749		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000413136		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000549377		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000473419		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000452084		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000550374		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000480780		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000416548		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000548778		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000383204		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000487403		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000432074	ENST00000547127		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000437840		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000497454		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000444031		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000494749		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000413136		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000549377		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000473419		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000452084		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000550374		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000480780		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000416548		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000548778		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000383204		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000487403		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
intron-intron	ENST00000510546	ENST00000547127		TCGA	RV	PRAD	TCGA-HC-A76W-01A	DAP	chr5	10679342	-	RGL2	chr6	33267176	-
5CDS-intron	ENST00000264161	ENST00000468758		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5CDS-intron	ENST00000264161	ENST00000409645		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5CDS-intron	ENST00000264161	ENST00000281923		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5UTR-intron	ENST00000537273	ENST00000468758		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5UTR-intron	ENST00000537273	ENST00000409645		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5UTR-intron	ENST00000537273	ENST00000281923		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5UTR-intron	ENST00000463008	ENST00000468758		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5UTR-intron	ENST00000463008	ENST00000409645		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
5UTR-intron	ENST00000463008	ENST00000281923		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DARS	chr2	136736844	-	MGAT5	chr2	135075100	+
Frame-shit	ENST00000313250	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000313250	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000558263	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000558263	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000543741	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000543741	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000382761	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000382761	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000397073	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000397073	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000308178	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000308178	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000421831	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000421831	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000397075	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000397075	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000397074	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000397074	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000559632	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000559632	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000558581	ENST00000226578		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000558581	ENST00000505239		TCGA	RV	PRAD	TCGA-EJ-7781-01A	DHRS4	chr14	24423125	+	MANBA	chr4	103647840	-
Frame-shit	ENST00000266037	ENST00000299798		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	DOCK3	chr3	50879146	+	SLC9A5	chr16	67304641	+
5CDS-intron	ENST00000266037	ENST00000561472		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	DOCK3	chr3	50879146	+	SLC9A5	chr16	67304641	+
intron-3CDS	ENST00000398907	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398907	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398907	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398907	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398905	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398905	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398905	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000398905	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000288319	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000288319	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000288319	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000288319	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000398897	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000398897	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000398897	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000398897	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398911	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398911	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398911	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398911	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000398910	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000398910	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000398910	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000398910	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000417133	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000417133	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000417133	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000417133	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000442448	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000442448	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000442448	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000442448	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000453032	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000453032	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000453032	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000453032	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398919	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398919	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398919	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
In-frame	ENST00000398919	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000429727	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000429727	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000429727	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
intron-3CDS	ENST00000429727	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000485493	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000485493	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000485493	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
5UTR-3CDS	ENST00000485493	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ERG	chr21	39947586	-	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000421367	ENST00000370549		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
Frame-shit	ENST00000421367	ENST00000370552		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
5CDS-3UTR	ENST00000421367	ENST00000370546		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
5CDS-3UTR	ENST00000421367	ENST00000404542		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
Frame-shit	ENST00000407654	ENST00000370549		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
Frame-shit	ENST00000407654	ENST00000370552		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
5CDS-3UTR	ENST00000407654	ENST00000370546		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
5CDS-3UTR	ENST00000407654	ENST00000404542		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	ERLIN1	chr10	101923761	-	HPSE2	chr10	100219496	-
Frame-shit	ENST00000396373	ENST00000228862		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	ETV6	chr12	11905513	+	DUSP16	chr12	12672934	-
Frame-shit	ENST00000396373	ENST00000298573		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	ETV6	chr12	11905513	+	DUSP16	chr12	12672934	-
5CDS-intron	ENST00000396373	ENST00000545864		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	ETV6	chr12	11905513	+	DUSP16	chr12	12672934	-
3UTR-3CDS	ENST00000544715	ENST00000228862		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	ETV6	chr12	11905513	+	DUSP16	chr12	12672934	-
3UTR-3CDS	ENST00000544715	ENST00000298573		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	ETV6	chr12	11905513	+	DUSP16	chr12	12672934	-
3UTR-intron	ENST00000544715	ENST00000545864		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	ETV6	chr12	11905513	+	DUSP16	chr12	12672934	-
Frame-shit	ENST00000413566	ENST00000556826		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5CDS-5UTR	ENST00000413566	ENST00000557430		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5CDS-5UTR	ENST00000413566	ENST00000339762		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5CDS-5UTR	ENST00000413566	ENST00000554729		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
Frame-shit	ENST00000340918	ENST00000556826		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5CDS-5UTR	ENST00000340918	ENST00000557430		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5CDS-5UTR	ENST00000340918	ENST00000339762		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5CDS-5UTR	ENST00000340918	ENST00000554729		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
intron-3CDS	ENST00000556911	ENST00000556826		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
intron-5UTR	ENST00000556911	ENST00000557430		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
intron-5UTR	ENST00000556911	ENST00000339762		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
intron-5UTR	ENST00000556911	ENST00000554729		TCGA	RV	PRAD	TCGA-HC-8265-01A	EXOC5	chr14	57735340	-	SLC35F4	chr14	58060842	-
5UTR-5UTR	ENST00000545951	ENST00000526387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000545951	ENST00000312390		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000545951	ENST00000542590		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000382839	ENST00000526387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000382839	ENST00000312390		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000382839	ENST00000542590		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000324666	ENST00000526387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000324666	ENST00000312390		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000324666	ENST00000542590		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000502458	ENST00000526387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000502458	ENST00000312390		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000502458	ENST00000542590		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000505311	ENST00000526387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000505311	ENST00000312390		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
5UTR-5UTR	ENST00000505311	ENST00000542590		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	FAM193A	chr4	2628304	+	TBC1D10C	chr11	67171662	+
Frame-shit	ENST00000288078	ENST00000404938		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
Frame-shit	ENST00000288078	ENST00000258738		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000288078	ENST00000477094		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000288078	ENST00000443026		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000288078	ENST00000406935		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
intron-3CDS	ENST00000428974	ENST00000404938		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
intron-3CDS	ENST00000428974	ENST00000258738		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
intron-intron	ENST00000428974	ENST00000477094		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
intron-intron	ENST00000428974	ENST00000443026		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
intron-intron	ENST00000428974	ENST00000406935		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
Frame-shit	ENST00000571514	ENST00000404938		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
Frame-shit	ENST00000571514	ENST00000258738		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000571514	ENST00000477094		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000571514	ENST00000443026		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000571514	ENST00000406935		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
Frame-shit	ENST00000378912	ENST00000404938		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
Frame-shit	ENST00000378912	ENST00000258738		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000378912	ENST00000477094		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000378912	ENST00000443026		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5CDS-intron	ENST00000378912	ENST00000406935		TCGA	RV	PRAD	TCGA-KK-A7AY-01A	FUK	chr16	70512553	+	ABCB5	chr7	20778606	+
5UTR-5UTR	ENST00000380877	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000380877	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000380877	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000380877	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000380877	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000380877	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000380877	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000380877	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000380877	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000380877	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000220429	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000220429	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000220429	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000220429	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000220429	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000220429	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000220429	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000220429	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000220429	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000220429	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000543881	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000543881	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000543881	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000543881	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000543881	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000543881	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000543881	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000543881	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000543881	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000543881	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000429662	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000429662	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000429662	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000429662	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000429662	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000429662	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000429662	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000429662	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000429662	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000429662	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000396464	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000396464	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000396464	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000396464	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000396464	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000396464	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000396464	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000396464	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000396464	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000396464	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000359031	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000359031	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000359031	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000359031	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000359031	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000359031	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000359031	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000359031	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000359031	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000359031	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000560825	ENST00000395412		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000560825	ENST00000345990		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-5UTR	ENST00000560825	ENST00000395411		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000560825	ENST00000511130		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000560825	ENST00000512718		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000560825	ENST00000521364		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000560825	ENST00000510842		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000560825	ENST00000361991		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-intron	ENST00000560825	ENST00000360683		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
5UTR-3UTR	ENST00000560825	ENST00000508708		TCGA	RV	PRAD	TCGA-G9-6348-01A	GABPB1	chr15	50647182	-	CSNK1G3	chr5	122881111	+
In-frame	ENST00000395925	ENST00000302287		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
In-frame	ENST00000395925	ENST00000407838		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
In-frame	ENST00000395925	ENST00000404951		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
In-frame	ENST00000395925	ENST00000402026		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
In-frame	ENST00000395925	ENST00000402613		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5CDS-intron	ENST00000395925	ENST00000498834		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-3CDS	ENST00000479210	ENST00000302287		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-3CDS	ENST00000479210	ENST00000407838		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-3CDS	ENST00000479210	ENST00000404951		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-3CDS	ENST00000479210	ENST00000402026		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-3CDS	ENST00000479210	ENST00000402613		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-intron	ENST00000479210	ENST00000498834		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
intron-3CDS	ENST00000437480	ENST00000302287		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
intron-3CDS	ENST00000437480	ENST00000407838		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
intron-3CDS	ENST00000437480	ENST00000404951		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
intron-3CDS	ENST00000437480	ENST00000402026		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
intron-3CDS	ENST00000437480	ENST00000402613		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
intron-intron	ENST00000437480	ENST00000498834		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	GLI3	chr7	42116351	-	VSTM2A	chr7	54612315	+
5UTR-3CDS	ENST00000340645	ENST00000392993		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
5UTR-3CDS	ENST00000340645	ENST00000544571		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
5UTR-5UTR	ENST00000340645	ENST00000466685		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
5UTR-3CDS	ENST00000393667	ENST00000392993		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
5UTR-3CDS	ENST00000393667	ENST00000544571		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
5UTR-5UTR	ENST00000393667	ENST00000466685		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000472829	ENST00000392993		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
intron-3CDS	ENST00000472829	ENST00000544571		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
intron-5UTR	ENST00000472829	ENST00000466685		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	GOLGB1	chr3	121468479	-	GK5	chr3	141934534	-
5CDS-5UTR	ENST00000381486	ENST00000435564		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000536095		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000409365		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000331935		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000351439		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-5UTR	ENST00000381486	ENST00000410103		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000358139		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000456212		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000346717		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000381486	ENST00000482538		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000263834	ENST00000435564		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000536095		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000409365		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000331935		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000351439		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000263834	ENST00000410103		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000358139		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000456212		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000346717		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000263834	ENST00000482538		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000389825	ENST00000435564		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000536095		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000409365		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000331935		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000351439		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000389825	ENST00000410103		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000358139		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000456212		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000346717		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000389825	ENST00000482538		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000381483	ENST00000435564		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000536095		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000409365		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000331935		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000351439		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000381483	ENST00000410103		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000358139		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000456212		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000346717		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000381483	ENST00000482538		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-5UTR	ENST00000234142	ENST00000435564		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000536095		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000409365		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000331935		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000351439		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-5UTR	ENST00000234142	ENST00000410103		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000358139		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000456212		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000346717		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000234142	ENST00000482538		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000396123	ENST00000435564		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000536095		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000409365		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000331935		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000351439		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000396123	ENST00000410103		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000358139		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000456212		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000346717		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
intron-intron	ENST00000396123	ENST00000482538		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	GREB1	chr2	11742668	+	PDE1A	chr2	183387113	-
In-frame	ENST00000313269	ENST00000421673		TCGA	RV	PRAD	TCGA-CH-5766-01A	GRINA	chr8	145067583	+	MUC6	chr11	1018770	-
In-frame	ENST00000395068	ENST00000421673		TCGA	RV	PRAD	TCGA-CH-5766-01A	GRINA	chr8	145067583	+	MUC6	chr11	1018770	-
3UTR-5UTR	ENST00000373823	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373823	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373823	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000373823	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373808	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373808	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373808	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000373808	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000436847	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000436847	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000436847	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000436847	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000449733	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000449733	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000449733	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000449733	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000412819	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000412819	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000412819	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000412819	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000394353	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000394353	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000394353	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000394353	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000341272	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000341272	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000341272	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000341272	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000545652	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000545652	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000545652	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-intron	ENST00000545652	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373818	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373818	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-5UTR	ENST00000373818	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
3UTR-intron	ENST00000373818	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000485767	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000485767	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000485767	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-intron	ENST00000485767	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000373807	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000373807	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000373807	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-intron	ENST00000373807	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000373806	ENST00000297071		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000373806	ENST00000392502		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-5UTR	ENST00000373806	ENST00000538367		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
intron-intron	ENST00000373806	ENST00000474586		TCGA	RV	PRAD	TCGA-EJ-7794-01A	GSN	chr9	124095016	+	TRA2A	chr7	23571595	-
Frame-shit	ENST00000355904	ENST00000553558		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
Frame-shit	ENST00000355904	ENST00000334988		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
5CDS-intron	ENST00000355904	ENST00000566478		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
5CDS-intron	ENST00000355904	ENST00000560393		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
intron-3CDS	ENST00000522833	ENST00000553558		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
intron-3CDS	ENST00000522833	ENST00000334988		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
intron-intron	ENST00000522833	ENST00000566478		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
intron-intron	ENST00000522833	ENST00000560393		TCGA	RV	PRAD	TCGA-HC-7081-01A	GTF2E2	chr8	30510950	-	HEATR4	chr14	73980938	-
intron-intron	ENST00000391976	ENST00000290902		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000391976	ENST00000431380		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-5UTR	ENST00000391976	ENST00000400762		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000310931	ENST00000290902		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000310931	ENST00000431380		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-5UTR	ENST00000310931	ENST00000400762		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000391975	ENST00000290902		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000391975	ENST00000431380		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-5UTR	ENST00000391975	ENST00000400762		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000427183	ENST00000290902		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000427183	ENST00000431380		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-5UTR	ENST00000427183	ENST00000400762		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000476807	ENST00000290902		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-intron	ENST00000476807	ENST00000431380		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
intron-5UTR	ENST00000476807	ENST00000400762		TCGA	RV	PRAD	TCGA-HC-7077-01A	HDLBP	chr2	242168877	-	SPON2	chr4	1198876	-
5CDS-intron	ENST00000383329	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000376228	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000423509	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000430940	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000422726	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000424832	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000458192	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000422921	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000456487	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000420206	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000495725	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000419135	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000433153	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000429840	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000457903	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000479546	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000400395	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000383323	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000434884	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000400394	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000494871	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000453809	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000414249	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000419590	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000438171	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000552865	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000495898	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000383483	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000383487	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000458668	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
intron-intron	ENST00000400341	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	HLA-C	chr6	31236526	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000375650	ENST00000360772		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000359169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000360304		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000418370		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000578202		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000354792		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000346322		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000583087		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000475616		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5CDS-intron	ENST00000375650	ENST00000510775		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000360772		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000359169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000360304		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000418370		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000578202		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000354792		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000346322		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000583087		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000475616		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000545241	ENST00000510775		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000360772		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000359169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000360304		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000418370		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000578202		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000354792		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000346322		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000583087		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000475616		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000450744	ENST00000510775		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000360772		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000359169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000360304		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000418370		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000578202		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000354792		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000346322		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000583087		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000475616		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391548	ENST00000510775		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000360772		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000359169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000360304		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000418370		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000578202		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000354792		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000346322		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000583087		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000475616		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000445736	ENST00000510775		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000360772		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000359169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000360304		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000418370		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000578202		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000354792		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000346322		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000583087		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000475616		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
intron-intron	ENST00000391555	ENST00000510775		TCGA	RV	PRAD	TCGA-G9-6371-01A	HSPA1B	chr6	31798031	+	MYLK	chr3	123519035	-
5UTR-intron	ENST00000256108	ENST00000517939		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000256108	ENST00000517781		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000256108	ENST00000378439		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000256108	ENST00000276659		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-intron	ENST00000311489	ENST00000517939		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000311489	ENST00000517781		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000311489	ENST00000378439		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000311489	ENST00000276659		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-intron	ENST00000449740	ENST00000517939		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000449740	ENST00000517781		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000449740	ENST00000378439		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000449740	ENST00000276659		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-intron	ENST00000523710	ENST00000517939		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000523710	ENST00000517781		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000523710	ENST00000378439		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
5UTR-5UTR	ENST00000523710	ENST00000276659		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	IMPA1	chr8	82598487	-	RSPO2	chr8	109095035	-
intron-3CDS	ENST00000409532	ENST00000408978		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
intron-3CDS	ENST00000409532	ENST00000409044		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
intron-3CDS	ENST00000409532	ENST00000334231		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
intron-3UTR	ENST00000409532	ENST00000602629		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000264107	ENST00000408978		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000264107	ENST00000409044		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000264107	ENST00000334231		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
5CDS-3UTR	ENST00000264107	ENST00000602629		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000343713	ENST00000408978		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000343713	ENST00000409044		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000343713	ENST00000334231		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
5CDS-3UTR	ENST00000343713	ENST00000602629		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000264106	ENST00000408978		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000264106	ENST00000409044		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000264106	ENST00000334231		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
5CDS-3UTR	ENST00000264106	ENST00000602629		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000375221	ENST00000408978		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000375221	ENST00000409044		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000375221	ENST00000334231		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
5CDS-3UTR	ENST00000375221	ENST00000602629		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000409080	ENST00000408978		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000409080	ENST00000409044		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
In-frame	ENST00000409080	ENST00000334231		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
5CDS-3UTR	ENST00000409080	ENST00000602629		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	ITGA6	chr2	173292698	+	MYO3B	chr2	171191895	+
Frame-shit	ENST00000275532	ENST00000326003		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000275532	ENST00000597483		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000275532	ENST00000593997		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000275532	ENST00000595952		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000275532	ENST00000360617		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
Frame-shit	ENST00000443322	ENST00000326003		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000443322	ENST00000597483		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000443322	ENST00000593997		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000443322	ENST00000595952		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000443322	ENST00000360617		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-3CDS	ENST00000510829	ENST00000326003		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000510829	ENST00000597483		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000510829	ENST00000593997		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000510829	ENST00000595952		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000510829	ENST00000360617		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-3CDS	ENST00000380828	ENST00000326003		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000380828	ENST00000597483		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000380828	ENST00000593997		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000380828	ENST00000595952		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000380828	ENST00000360617		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-3CDS	ENST00000451741	ENST00000326003		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000451741	ENST00000597483		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000451741	ENST00000593997		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000451741	ENST00000595952		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
intron-intron	ENST00000451741	ENST00000360617		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	KCTD7	chr7	66104215	+	KLK3	chr19	51358171	+
Frame-shit	ENST00000251691	ENST00000539243		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
Frame-shit	ENST00000251691	ENST00000313093		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-5UTR	ENST00000251691	ENST00000536472		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-5UTR	ENST00000251691	ENST00000590214		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-5UTR	ENST00000251691	ENST00000586866		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-5UTR	ENST00000251691	ENST00000543365		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-5UTR	ENST00000251691	ENST00000592335		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-intron	ENST00000251691	ENST00000590577		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
5CDS-intron	ENST00000251691	ENST00000591169		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	KIAA1244	chr6	138618092	+	HMHA1	chr19	1073148	+
Frame-shit	ENST00000435030	ENST00000342992		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000435030	ENST00000460472		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000435030	ENST00000589042		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000435030	ENST00000342175		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000435030	ENST00000359218		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000435030	ENST00000591111		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000435030	ENST00000360870		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
Frame-shit	ENST00000414838	ENST00000342992		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000414838	ENST00000460472		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000414838	ENST00000589042		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000414838	ENST00000342175		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000414838	ENST00000359218		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000414838	ENST00000591111		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000414838	ENST00000360870		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-3CDS	ENST00000464066	ENST00000342992		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-intron	ENST00000464066	ENST00000460472		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-intron	ENST00000464066	ENST00000589042		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-intron	ENST00000464066	ENST00000342175		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-intron	ENST00000464066	ENST00000359218		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-intron	ENST00000464066	ENST00000591111		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
3UTR-intron	ENST00000464066	ENST00000360870		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
Frame-shit	ENST00000397413	ENST00000342992		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000397413	ENST00000460472		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000397413	ENST00000589042		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000397413	ENST00000342175		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000397413	ENST00000359218		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000397413	ENST00000591111		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000397413	ENST00000360870		TCGA	RV	PRAD	TCGA-J4-A83J-01A	KIF5C	chr2	149840280	+	TTN	chr2	179540722	-
5CDS-intron	ENST00000265537	ENST00000477063		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000265537	ENST00000492595		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000265537	ENST00000481965		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000265537	ENST00000309934		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000415258	ENST00000477063		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000415258	ENST00000492595		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000415258	ENST00000481965		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000415258	ENST00000309934		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000414984	ENST00000477063		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000414984	ENST00000492595		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000414984	ENST00000481965		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-intron	ENST00000414984	ENST00000309934		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
intron-intron	ENST00000467936	ENST00000477063		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
intron-intron	ENST00000467936	ENST00000492595		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
intron-intron	ENST00000467936	ENST00000481965		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
intron-intron	ENST00000467936	ENST00000309934		TCGA	RV	PRAD	TCGA-HC-7233-01A	LARS2	chr3	45500378	+	SEC22A	chr3	122978371	+
5CDS-5UTR	ENST00000448637	ENST00000371939		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	LPP	chr3	188426181	+	LIPJ	chr10	90347023	+
5CDS-5UTR	ENST00000312675	ENST00000371939		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	LPP	chr3	188426181	+	LIPJ	chr10	90347023	+
5CDS-5UTR	ENST00000543006	ENST00000371939		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	LPP	chr3	188426181	+	LIPJ	chr10	90347023	+
3UTR-5UTR	ENST00000471917	ENST00000371939		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	LPP	chr3	188426181	+	LIPJ	chr10	90347023	+
In-frame	ENST00000295628	ENST00000295633		TCGA	RV	PRAD	TCGA-HC-8265-01B	LRRC58	chr3	120067591	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000295628	ENST00000424703		TCGA	RV	PRAD	TCGA-HC-8265-01B	LRRC58	chr3	120067591	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000295628	ENST00000485968		TCGA	RV	PRAD	TCGA-HC-8265-01B	LRRC58	chr3	120067591	-	FSTL1	chr3	120134874	-
intron-intron	ENST00000231751	ENST00000556679		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000456570		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000477310		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000425368		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000497841		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000417261		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000427888		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000459734		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000455591		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000433503		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000474621		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000424727		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000436692		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000473139		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000399981		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000419920		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000465211		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000375455		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000489605		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000426239		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000419411		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000231751	ENST00000460958		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000556679		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000456570		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000477310		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000425368		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000497841		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000417261		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000427888		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000459734		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000455591		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000433503		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000474621		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000424727		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000436692		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000473139		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000399981		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000419920		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000465211		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000375455		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000489605		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000426239		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000419411		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-intron	ENST00000426532	ENST00000460958		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000556679		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000456570		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000477310		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000425368		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000497841		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000417261		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000427888		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000459734		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000455591		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000433503		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000474621		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000424727		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000436692		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000473139		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000399981		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000419920		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000465211		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000375455		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000489605		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000426239		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000419411		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000417439	ENST00000460958		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000556679		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000456570		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000477310		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000425368		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000497841		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000417261		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000427888		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000459734		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000455591		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000433503		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000474621		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000424727		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000436692		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000473139		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000399981		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000419920		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000465211		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000375455		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000489605		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000426239		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000419411		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
intron-intron	ENST00000493056	ENST00000460958		TCGA	RV	PRAD	TCGA-HC-7079-01A	LTF	chr3	46477510	-	CFB	chr6	31913427	+
5CDS-5UTR	ENST00000261483	ENST00000308100		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	MAN2A1	chr5	109125228	+	DIRC1	chr2	189599676	-
intron-5UTR	ENST00000505313	ENST00000308100		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	MAN2A1	chr5	109125228	+	DIRC1	chr2	189599676	-
Frame-shit	ENST00000569482	ENST00000560219		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000569482	ENST00000558723		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000569482	ENST00000341735		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
Frame-shit	ENST00000565683	ENST00000560219		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000565683	ENST00000558723		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000565683	ENST00000341735		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
Frame-shit	ENST00000563622	ENST00000560219		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000563622	ENST00000558723		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000563622	ENST00000341735		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
Frame-shit	ENST00000267978	ENST00000560219		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000267978	ENST00000558723		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000267978	ENST00000341735		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
intron-3CDS	ENST00000563539	ENST00000560219		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
intron-3UTR	ENST00000563539	ENST00000558723		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
intron-3UTR	ENST00000563539	ENST00000341735		TCGA	RV	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90321296	+
5CDS-5UTR	ENST00000374040	ENST00000326003		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000374040	ENST00000597483		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000374040	ENST00000593997		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-intron	ENST00000374040	ENST00000595952		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-intron	ENST00000374040	ENST00000360617		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000493901	ENST00000326003		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000493901	ENST00000597483		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000493901	ENST00000593997		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-intron	ENST00000493901	ENST00000595952		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-intron	ENST00000493901	ENST00000360617		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000357582	ENST00000326003		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000357582	ENST00000597483		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000357582	ENST00000593997		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-intron	ENST00000357582	ENST00000595952		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5CDS-intron	ENST00000357582	ENST00000360617		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	MAP3K6	chr1	27685908	-	KLK3	chr19	51358191	+
5UTR-5UTR	ENST00000261845	ENST00000308580		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52155008	+
5UTR-intron	ENST00000261845	ENST00000544199		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52155008	+
5UTR-intron	ENST00000261845	ENST00000561136		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52155008	+
intron-5UTR	ENST00000558841	ENST00000308580		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52155008	+
intron-intron	ENST00000558841	ENST00000544199		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52155008	+
intron-intron	ENST00000558841	ENST00000561136		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	MAPK6	chr15	52311573	+	TMOD3	chr15	52155008	+
Frame-shit	ENST00000256186	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
Frame-shit	ENST00000256186	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
Frame-shit	ENST00000256186	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
Frame-shit	ENST00000256186	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
Frame-shit	ENST00000256186	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
5CDS-intron	ENST00000256186	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
intron-3CDS	ENST00000529028	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
intron-3CDS	ENST00000529028	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
intron-3CDS	ENST00000529028	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
intron-3CDS	ENST00000529028	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
intron-3CDS	ENST00000529028	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
intron-intron	ENST00000529028	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-7793-01A	MICALCL	chr11	12376404	+	MICAL2	chr11	12278332	+
In-frame	ENST00000382172	ENST00000248484		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
In-frame	ENST00000382172	ENST00000382263		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
5CDS-5UTR	ENST00000382172	ENST00000403372		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
5CDS-intron	ENST00000382172	ENST00000464735		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
5CDS-intron	ENST00000382172	ENST00000382258		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
intron-3CDS	ENST00000469167	ENST00000248484		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
intron-3CDS	ENST00000469167	ENST00000382263		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
intron-5UTR	ENST00000469167	ENST00000403372		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
intron-intron	ENST00000469167	ENST00000464735		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
intron-intron	ENST00000469167	ENST00000382258		TCGA	RV	PRAD	TCGA-EJ-5497-01A	MIPEP	chr13	24410379	-	TNFRSF19	chr13	24190006	+
3UTR-3CDS	ENST00000477339	ENST00000218006		TCGA	RV	PRAD	TCGA-J4-A67L-01A	MMP26	chr11	4788571	+	GUCY2F	chrX	108652397	-
5UTR-3CDS	ENST00000380390	ENST00000218006		TCGA	RV	PRAD	TCGA-J4-A67L-01A	MMP26	chr11	4788571	+	GUCY2F	chrX	108652397	-
intron-3CDS	ENST00000300762	ENST00000218006		TCGA	RV	PRAD	TCGA-J4-A67L-01A	MMP26	chr11	4788571	+	GUCY2F	chrX	108652397	-
3UTR-5UTR	ENST00000555545	ENST00000509081		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
3UTR-5UTR	ENST00000555545	ENST00000264400		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
3UTR-5UTR	ENST00000555545	ENST00000335927		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
3UTR-5UTR	ENST00000555545	ENST00000436139		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
3UTR-intron	ENST00000555545	ENST00000514889		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000261245	ENST00000509081		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000261245	ENST00000264400		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000261245	ENST00000335927		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000261245	ENST00000436139		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-intron	ENST00000261245	ENST00000514889		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000539616	ENST00000509081		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000539616	ENST00000264400		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000539616	ENST00000335927		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-5UTR	ENST00000539616	ENST00000436139		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
5CDS-intron	ENST00000539616	ENST00000514889		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	MNAT1	chr14	61201669	+	RASGEF1B	chr4	82380668	-
Frame-shit	ENST00000296473	ENST00000397841		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000296473	ENST00000330551		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000296473	ENST00000380070		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000455683	ENST00000397841		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000455683	ENST00000330551		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000455683	ENST00000380070		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000417270	ENST00000397841		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000417270	ENST00000330551		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
Frame-shit	ENST00000417270	ENST00000380070		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
intron-3CDS	ENST00000483022	ENST00000397841		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
intron-3CDS	ENST00000483022	ENST00000330551		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
intron-3CDS	ENST00000483022	ENST00000380070		TCGA	RV	PRAD	TCGA-CH-5745-01A	MON1A	chr3	49947552	-	C21orf67	chr21	46355805	-
5UTR-3CDS	ENST00000261681	ENST00000315266		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000261681	ENST00000478722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000261681	ENST00000459628		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000261681	ENST00000543237		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000261681	ENST00000305960		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-intron	ENST00000261681	ENST00000544752		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000555925	ENST00000315266		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000555925	ENST00000478722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000555925	ENST00000459628		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000555925	ENST00000543237		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000555925	ENST00000305960		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-intron	ENST00000555925	ENST00000544752		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554911	ENST00000459628		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554911	ENST00000543237		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554911	ENST00000305960		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
intron-intron	ENST00000554911	ENST00000544752		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000556345	ENST00000459628		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000556345	ENST00000543237		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-3CDS	ENST00000556345	ENST00000305960		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
5UTR-intron	ENST00000556345	ENST00000544752		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MPP5	chr14	67736500	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000549982	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000549982	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
5CDS-intron	ENST00000549982	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000361630	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000361630	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
5CDS-intron	ENST00000361630	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000552217	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000552217	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
5CDS-intron	ENST00000552217	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000393128	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000393128	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
5CDS-intron	ENST00000393128	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000547098	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000547098	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
5CDS-intron	ENST00000547098	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000548545	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
Frame-shit	ENST00000548545	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
5CDS-intron	ENST00000548545	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
intron-3CDS	ENST00000552938	ENST00000334512		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
intron-3CDS	ENST00000552938	ENST00000478357		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
intron-intron	ENST00000552938	ENST00000446377		TCGA	RV	PRAD	TCGA-HC-8266-01A	MRPL42	chr12	93870793	+	ZMIZ1	chr10	81036938	+
In-frame	ENST00000233146	ENST00000409245		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
In-frame	ENST00000233146	ENST00000319190		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-3UTR	ENST00000233146	ENST00000461601		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-3UTR	ENST00000233146	ENST00000394850		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-5UTR	ENST00000233146	ENST00000263737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-5UTR	ENST00000233146	ENST00000536057		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
In-frame	ENST00000543555	ENST00000409245		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
In-frame	ENST00000543555	ENST00000319190		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-3UTR	ENST00000543555	ENST00000461601		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-3UTR	ENST00000543555	ENST00000394850		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-5UTR	ENST00000543555	ENST00000263737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-5UTR	ENST00000543555	ENST00000536057		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
In-frame	ENST00000406134	ENST00000409245		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
In-frame	ENST00000406134	ENST00000319190		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-3UTR	ENST00000406134	ENST00000461601		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-3UTR	ENST00000406134	ENST00000394850		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-5UTR	ENST00000406134	ENST00000263737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
5CDS-5UTR	ENST00000406134	ENST00000536057		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000461394	ENST00000409245		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000461394	ENST00000319190		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000461394	ENST00000461601		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000461394	ENST00000394850		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000461394	ENST00000263737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000461394	ENST00000536057		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MSH2	chr2	47630541	+	TTC7A	chr2	47177502	+
Frame-shit	ENST00000317173	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
Frame-shit	ENST00000317173	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
5CDS-intron	ENST00000317173	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
Frame-shit	ENST00000441698	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
Frame-shit	ENST00000441698	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
5CDS-intron	ENST00000441698	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
Frame-shit	ENST00000518255	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
Frame-shit	ENST00000518255	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
5CDS-intron	ENST00000518255	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000521209	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000521209	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-intron	ENST00000521209	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000528246	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000528246	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-intron	ENST00000528246	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000382490	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000382490	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-intron	ENST00000382490	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000517594	ENST00000305188		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-3CDS	ENST00000517594	ENST00000397418		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
intron-intron	ENST00000517594	ENST00000523910		TCGA	RV	PRAD	TCGA-CH-5741-01A	MSRA	chr8	9912168	+	ESCO2	chr8	27657058	+
3UTR-3CDS	ENST00000332674	ENST00000326003		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
3UTR-intron	ENST00000332674	ENST00000597483		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
3UTR-intron	ENST00000332674	ENST00000593997		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
3UTR-intron	ENST00000332674	ENST00000595952		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
3UTR-intron	ENST00000332674	ENST00000360617		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
In-frame	ENST00000361248	ENST00000326003		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000361248	ENST00000597483		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000361248	ENST00000593997		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000361248	ENST00000595952		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000361248	ENST00000360617		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
In-frame	ENST00000239007	ENST00000326003		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000239007	ENST00000597483		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000239007	ENST00000593997		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000239007	ENST00000595952		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000239007	ENST00000360617		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-3CDS	ENST00000393134	ENST00000326003		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000393134	ENST00000597483		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000393134	ENST00000593997		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000393134	ENST00000595952		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000393134	ENST00000360617		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
In-frame	ENST00000485566	ENST00000326003		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000485566	ENST00000597483		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000485566	ENST00000593997		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000485566	ENST00000595952		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
5CDS-intron	ENST00000485566	ENST00000360617		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-3CDS	ENST00000369612	ENST00000326003		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000369612	ENST00000597483		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000369612	ENST00000593997		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000369612	ENST00000595952		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-intron	ENST00000369612	ENST00000360617		TCGA	RV	PRAD	TCGA-HC-7742-01A	MXI1	chr10	112046264	+	KLK3	chr19	51358171	+
intron-3CDS	ENST00000396324	ENST00000508784		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000396324	ENST00000513320		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000396324	ENST00000379448		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000396324	ENST00000511534		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000452625	ENST00000508784		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000452625	ENST00000513320		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000452625	ENST00000379448		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000452625	ENST00000511534		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000576790	ENST00000508784		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000576790	ENST00000513320		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000576790	ENST00000379448		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000576790	ENST00000511534		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000300036	ENST00000508784		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000300036	ENST00000513320		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000300036	ENST00000379448		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000300036	ENST00000511534		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000573908	ENST00000508784		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000573908	ENST00000513320		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000573908	ENST00000379448		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000573908	ENST00000511534		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MYH11	chr16	15796992	-	ZNF827	chr4	146859787	-
intron-5UTR	ENST00000216181	ENST00000326003		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000216181	ENST00000597483		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000216181	ENST00000593997		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-intron	ENST00000216181	ENST00000595952		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-intron	ENST00000216181	ENST00000360617		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000475726	ENST00000326003		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000475726	ENST00000597483		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000475726	ENST00000593997		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-intron	ENST00000475726	ENST00000595952		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-intron	ENST00000475726	ENST00000360617		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000401701	ENST00000326003		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000401701	ENST00000597483		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-5UTR	ENST00000401701	ENST00000593997		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-intron	ENST00000401701	ENST00000595952		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
intron-intron	ENST00000401701	ENST00000360617		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MYH9	chr22	36685235	-	KLK3	chr19	51358191	+
3UTR-3CDS	ENST00000578382	ENST00000380588		TCGA	RV	PRAD	TCGA-EJ-5525-01A	MYO15B	chr17	73608097	+	IGSF5	chr21	41163935	+
3UTR-intron	ENST00000578382	ENST00000479378		TCGA	RV	PRAD	TCGA-EJ-5525-01A	MYO15B	chr17	73608097	+	IGSF5	chr21	41163935	+
intron-3CDS	ENST00000583560	ENST00000380588		TCGA	RV	PRAD	TCGA-EJ-5525-01A	MYO15B	chr17	73608097	+	IGSF5	chr21	41163935	+
intron-intron	ENST00000583560	ENST00000479378		TCGA	RV	PRAD	TCGA-EJ-5525-01A	MYO15B	chr17	73608097	+	IGSF5	chr21	41163935	+
In-frame	ENST00000540320	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000540320	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000540320	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000540320	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000540320	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000540320	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
5CDS-intron	ENST00000540320	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000400445	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000400445	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000400445	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000400445	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000400445	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000400445	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
5CDS-intron	ENST00000400445	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000310336	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000310336	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000310336	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000310336	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000310336	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000310336	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
5CDS-intron	ENST00000310336	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000379939	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000379939	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000379939	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000379939	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000379939	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
In-frame	ENST00000379939	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
5CDS-intron	ENST00000379939	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000537702	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000537702	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000537702	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000537702	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000537702	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000537702	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-intron	ENST00000537702	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000379922	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000379922	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000379922	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000379922	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000379922	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000379922	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-intron	ENST00000379922	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000461581	ENST00000541179		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000461581	ENST00000379749		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000461581	ENST00000379747		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000461581	ENST00000379743		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000461581	ENST00000379742		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-3CDS	ENST00000461581	ENST00000541481		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
intron-intron	ENST00000461581	ENST00000497145		TCGA	RV	PRAD	TCGA-CH-5753-01A	NBEA	chr13	35883729	+	POSTN	chr13	38171419	-
Frame-shit	ENST00000380871	ENST00000369002		TCGA	RV	PRAD	TCGA-EJ-5519-01A	NKX3-1	chr8	23536206	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000380871	ENST00000460009		TCGA	RV	PRAD	TCGA-EJ-5519-01A	NKX3-1	chr8	23536206	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000523261	ENST00000369002		TCGA	RV	PRAD	TCGA-EJ-5519-01A	NKX3-1	chr8	23536206	-	SEC63	chr6	108214782	-
intron-intron	ENST00000523261	ENST00000460009		TCGA	RV	PRAD	TCGA-EJ-5519-01A	NKX3-1	chr8	23536206	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000472647	ENST00000366558		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
Frame-shit	ENST00000472647	ENST00000366559		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
5CDS-intron	ENST00000472647	ENST00000484628		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
5CDS-intron	ENST00000472647	ENST00000366557		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
In-frame	ENST00000367811	ENST00000366558		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
In-frame	ENST00000367811	ENST00000366559		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
5CDS-intron	ENST00000367811	ENST00000484628		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
5CDS-intron	ENST00000367811	ENST00000366557		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
intron-3CDS	ENST00000469474	ENST00000366558		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
intron-3CDS	ENST00000469474	ENST00000366559		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
intron-intron	ENST00000469474	ENST00000484628		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
intron-intron	ENST00000469474	ENST00000366557		TCGA	RV	PRAD	TCGA-VP-A87D-01A	NME7	chr1	169199956	-	KMO	chr1	241749981	+
5CDS-intron	ENST00000398238	ENST00000263360		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
5CDS-intron	ENST00000398238	ENST00000528180		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
5CDS-intron	ENST00000398238	ENST00000327320		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
5CDS-intron	ENST00000398238	ENST00000351625		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
5CDS-5UTR	ENST00000398238	ENST00000527888		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000225282	ENST00000263360		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000225282	ENST00000528180		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000225282	ENST00000327320		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000225282	ENST00000351625		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-5UTR	ENST00000225282	ENST00000527888		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000575068	ENST00000263360		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000575068	ENST00000528180		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000575068	ENST00000327320		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-intron	ENST00000575068	ENST00000351625		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
intron-5UTR	ENST00000575068	ENST00000527888		TCGA	RV	PRAD	TCGA-KK-A59X-01A	NSF	chr17	44834830	+	EED	chr11	85987947	+
In-frame	ENST00000374791	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000374791	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000374791	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
In-frame	ENST00000539799	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000539799	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000539799	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-3CDS	ENST00000427481	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000427481	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000427481	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-3CDS	ENST00000374786	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000374786	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000374786	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-3CDS	ENST00000425719	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000425719	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000425719	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-3CDS	ENST00000374784	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000374784	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000374784	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-3CDS	ENST00000474900	ENST00000530950		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000474900	ENST00000526823		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
intron-5UTR	ENST00000474900	ENST00000532895		TCGA	RV	PRAD	TCGA-EJ-7781-01A	NTM	chr11	131240783	+	CARD18	chr11	105009805	-
Frame-shit	ENST00000225388	ENST00000225719		TCGA	RV	PRAD	TCGA-HC-7742-01A	NUFIP2	chr17	27620801	-	CPD	chr17	28712007	+
Frame-shit	ENST00000225388	ENST00000543464		TCGA	RV	PRAD	TCGA-HC-7742-01A	NUFIP2	chr17	27620801	-	CPD	chr17	28712007	+
5CDS-intron	ENST00000225388	ENST00000584051		TCGA	RV	PRAD	TCGA-HC-7742-01A	NUFIP2	chr17	27620801	-	CPD	chr17	28712007	+
Frame-shit	ENST00000579665	ENST00000225719		TCGA	RV	PRAD	TCGA-HC-7742-01A	NUFIP2	chr17	27620801	-	CPD	chr17	28712007	+
Frame-shit	ENST00000579665	ENST00000543464		TCGA	RV	PRAD	TCGA-HC-7742-01A	NUFIP2	chr17	27620801	-	CPD	chr17	28712007	+
5CDS-intron	ENST00000579665	ENST00000584051		TCGA	RV	PRAD	TCGA-HC-7742-01A	NUFIP2	chr17	27620801	-	CPD	chr17	28712007	+
In-frame	ENST00000351960	ENST00000543948		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000351960	ENST00000219599		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-intron	ENST00000351960	ENST00000415987		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-intron	ENST00000351960	ENST00000396023		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000351960	ENST00000574787		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
Frame-shit	ENST00000358965	ENST00000543948		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000358965	ENST00000219599		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-intron	ENST00000358965	ENST00000415987		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-intron	ENST00000358965	ENST00000396023		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000358965	ENST00000574787		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
In-frame	ENST00000393695	ENST00000543948		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000393695	ENST00000219599		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-intron	ENST00000393695	ENST00000415987		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-intron	ENST00000393695	ENST00000396023		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000393695	ENST00000574787		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
intron-3CDS	ENST00000543450	ENST00000543948		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
intron-5UTR	ENST00000543450	ENST00000219599		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
intron-intron	ENST00000543450	ENST00000415987		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
intron-intron	ENST00000543450	ENST00000396023		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
intron-5UTR	ENST00000543450	ENST00000574787		TCGA	RV	PRAD	TCGA-HC-7821-01A	NUMA1	chr11	71713910	-	CRYM	chr16	21290281	-
5CDS-5UTR	ENST00000245544	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000245544	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000245544	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000245544	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-5UTR	ENST00000541827	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000541827	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000541827	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000541827	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-5UTR	ENST00000579324	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000579324	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000579324	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000579324	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
3UTR-5UTR	ENST00000449421	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
3UTR-intron	ENST00000449421	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
3UTR-intron	ENST00000449421	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
3UTR-intron	ENST00000449421	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-5UTR	ENST00000579298	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000579298	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000579298	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000579298	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-5UTR	ENST00000447371	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000447371	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000447371	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-intron	ENST00000447371	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
intron-5UTR	ENST00000540768	ENST00000429149		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
intron-intron	ENST00000540768	ENST00000569641		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
intron-intron	ENST00000540768	ENST00000288098		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
intron-intron	ENST00000540768	ENST00000566361		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP85	chr17	73222252	+	IL34	chr16	70680451	+
5CDS-5UTR	ENST00000361828	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361828	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361828	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-3UTR	ENST00000361828	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361510	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361510	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361510	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-3UTR	ENST00000361510	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361150	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361150	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361150	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-3UTR	ENST00000361150	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361715	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361715	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361715	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-3UTR	ENST00000361715	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361908	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361908	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000361908	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-3UTR	ENST00000361908	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000392438	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000392438	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000392438	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-3UTR	ENST00000392438	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
intron-5UTR	ENST00000487986	ENST00000314118		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
intron-5UTR	ENST00000487986	ENST00000421265		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
intron-5UTR	ENST00000487986	ENST00000541663		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
intron-3UTR	ENST00000487986	ENST00000495440		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	OPA1	chr3	193311198	+	PIGX	chr3	196443729	+
5CDS-5UTR	ENST00000552285	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
5CDS-intron	ENST00000552285	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
5CDS-intron	ENST00000552285	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
5CDS-intron	ENST00000552285	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
5CDS-intron	ENST00000552285	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000315970	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000315970	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000315970	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000315970	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000315970	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000439210	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000439210	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000439210	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000439210	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000439210	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000389146	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389146	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389146	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389146	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389146	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000413095	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000413095	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000413095	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000413095	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000413095	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000551035	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000551035	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000551035	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000551035	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000551035	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000435406	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000435406	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000435406	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000435406	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000435406	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000257966	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000257966	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000257966	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000257966	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000257966	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-5UTR	ENST00000389142	ENST00000391976		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389142	ENST00000310931		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389142	ENST00000391975		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389142	ENST00000427183		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
3UTR-intron	ENST00000389142	ENST00000476807		TCGA	RV	PRAD	TCGA-G9-6371-01A	OS9	chr12	58114781	+	HDLBP	chr2	242254618	-
5CDS-5UTR	ENST00000393249	ENST00000393330		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393249	ENST00000247829		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393249	ENST00000546561		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393249	ENST00000552128		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393249	ENST00000552786		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-5UTR	ENST00000261183	ENST00000393330		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000261183	ENST00000247829		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000261183	ENST00000546561		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000261183	ENST00000552128		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000261183	ENST00000552786		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-5UTR	ENST00000393250	ENST00000393330		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393250	ENST00000247829		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393250	ENST00000546561		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393250	ENST00000552128		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000393250	ENST00000552786		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000552178	ENST00000393330		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000552178	ENST00000247829		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000552178	ENST00000546561		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000552178	ENST00000552128		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
intron-intron	ENST00000552178	ENST00000552786		TCGA	RV	PRAD	TCGA-J4-A83J-01A	OSBPL8	chr12	76844631	-	TSPAN8	chr12	71835367	-
Frame-shit	ENST00000307116	ENST00000287139		TCGA	RV	PRAD	TCGA-EJ-5532-01A	P4HA1	chr10	74828604	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000373008	ENST00000287139		TCGA	RV	PRAD	TCGA-EJ-5532-01A	P4HA1	chr10	74828604	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000263556	ENST00000287139		TCGA	RV	PRAD	TCGA-EJ-5532-01A	P4HA1	chr10	74828604	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000412021	ENST00000287139		TCGA	RV	PRAD	TCGA-EJ-5532-01A	P4HA1	chr10	74828604	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000440381	ENST00000287139		TCGA	RV	PRAD	TCGA-EJ-5532-01A	P4HA1	chr10	74828604	-	NODAL	chr10	72195739	-
Frame-shit	ENST00000394890	ENST00000287139		TCGA	RV	PRAD	TCGA-EJ-5532-01A	P4HA1	chr10	74828604	-	NODAL	chr10	72195739	-
intron-3CDS	ENST00000322191	ENST00000379162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000322191	ENST00000441463		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-intron	ENST00000322191	ENST00000493226		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000342512	ENST00000379162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000342512	ENST00000441463		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-intron	ENST00000342512	ENST00000493226		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000371774	ENST00000379162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000371774	ENST00000441463		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-intron	ENST00000371774	ENST00000493226		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
Frame-shit	ENST00000307534	ENST00000379162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
Frame-shit	ENST00000307534	ENST00000441463		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
5CDS-intron	ENST00000307534	ENST00000493226		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000488482	ENST00000379162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-3CDS	ENST00000488482	ENST00000441463		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
intron-intron	ENST00000488482	ENST00000493226		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PANK1	chr10	91404357	-	PDK3	chrX	24523326	+
In-frame	ENST00000238714	ENST00000272895		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PAPOLG	chr2	60997646	+	ABCA12	chr2	215821502	-
In-frame	ENST00000238714	ENST00000389661		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PAPOLG	chr2	60997646	+	ABCA12	chr2	215821502	-
5CDS-intron	ENST00000238714	ENST00000412081		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PAPOLG	chr2	60997646	+	ABCA12	chr2	215821502	-
intron-3CDS	ENST00000483370	ENST00000272895		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PAPOLG	chr2	60997646	+	ABCA12	chr2	215821502	-
intron-3CDS	ENST00000483370	ENST00000389661		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PAPOLG	chr2	60997646	+	ABCA12	chr2	215821502	-
intron-intron	ENST00000483370	ENST00000412081		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PAPOLG	chr2	60997646	+	ABCA12	chr2	215821502	-
5UTR-intron	ENST00000393958	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393958	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393958	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393958	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393958	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393958	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393960	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393960	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393960	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393960	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393960	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000393960	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000355677	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000355677	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000355677	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000355677	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000355677	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000355677	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000524491	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000524491	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000524491	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000524491	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000524491	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
5UTR-intron	ENST00000524491	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000529047	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000529047	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000529047	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000529047	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000529047	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000529047	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000393955	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000393955	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000393955	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000393955	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000393955	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000393955	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000528224	ENST00000542515		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000528224	ENST00000279147		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000528224	ENST00000536870		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000528224	ENST00000535657		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000528224	ENST00000539414		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
intron-intron	ENST00000528224	ENST00000542341		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PC	chr11	66719901	-	ORAOV1	chr11	69488089	-
Frame-shit	ENST00000298281	ENST00000256935		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	PCF11	chr11	82888861	+	DOCK2	chr5	169410072	+
5CDS-5UTR	ENST00000298281	ENST00000540750		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	PCF11	chr11	82888861	+	DOCK2	chr5	169410072	+
5CDS-5UTR	ENST00000298281	ENST00000520908		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	PCF11	chr11	82888861	+	DOCK2	chr5	169410072	+
5CDS-3UTR	ENST00000298281	ENST00000523351		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	PCF11	chr11	82888861	+	DOCK2	chr5	169410072	+
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000340635	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000340635	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000360047	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000360047	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000507116	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000507116	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
Frame-shit	ENST00000502484	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
Frame-shit	ENST00000502484	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-5UTR	ENST00000502484	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-intron	ENST00000502484	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
In-frame	ENST00000546160	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
In-frame	ENST00000546160	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-5UTR	ENST00000546160	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-intron	ENST00000546160	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000502575	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000502575	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000358923	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000358923	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503258	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000503258	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000405755	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000405755	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000317118	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000317118	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503947	ENST00000453022		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000503947	ENST00000545085		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000340635	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000340635	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000340635	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000340635	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000360047	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000360047	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000360047	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000360047	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000507116	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000507116	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000507116	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000507116	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
Frame-shit	ENST00000502484	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
Frame-shit	ENST00000502484	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
5CDS-5UTR	ENST00000502484	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
5CDS-intron	ENST00000502484	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
In-frame	ENST00000546160	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
In-frame	ENST00000546160	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
5CDS-5UTR	ENST00000546160	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
5CDS-intron	ENST00000546160	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000502575	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000502575	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000502575	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000502575	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000358923	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000358923	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000358923	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000358923	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000503258	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000503258	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000503258	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000503258	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000405755	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000405755	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000405755	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000405755	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000317118	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000317118	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000317118	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000317118	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000503947	ENST00000426742		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-3CDS	ENST00000503947	ENST00000265038		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000503947	ENST00000462279		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-intron	ENST00000503947	ENST00000543101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	PDE4D	chr5	59481384	-	ERCC8	chr5	60200700	-
intron-5UTR	ENST00000340635	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000340635	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000340635	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
5CDS-5UTR	ENST00000360047	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
5CDS-5UTR	ENST00000360047	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
5CDS-5UTR	ENST00000360047	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000507116	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000507116	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000507116	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000502484	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000502484	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000502484	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000546160	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000546160	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000546160	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000502575	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000502575	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000502575	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000358923	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000358923	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000358923	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000503258	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000503258	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000503258	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000405755	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000405755	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000405755	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000317118	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000317118	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000317118	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000503947	ENST00000393611		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000503947	ENST00000303251		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
intron-5UTR	ENST00000503947	ENST00000303270		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PDE4D	chr5	58882155	-	RAB24	chr5	176730321	-
Frame-shit	ENST00000379162	ENST00000383710		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000379162	ENST00000357948		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000379162	ENST00000283269		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000379162	ENST00000490353		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
5CDS-intron	ENST00000379162	ENST00000462768		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000441463	ENST00000383710		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000441463	ENST00000357948		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000441463	ENST00000283269		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
Frame-shit	ENST00000441463	ENST00000490353		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
5CDS-intron	ENST00000441463	ENST00000462768		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
3UTR-3CDS	ENST00000493226	ENST00000383710		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
3UTR-3CDS	ENST00000493226	ENST00000357948		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
3UTR-3CDS	ENST00000493226	ENST00000283269		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
3UTR-3CDS	ENST00000493226	ENST00000490353		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
3UTR-intron	ENST00000493226	ENST00000462768		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDK3	chrX	24517017	+	CADPS	chr3	62648069	-
5UTR-3CDS	ENST00000403565	ENST00000330579		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5UTR-intron	ENST00000403565	ENST00000535343		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5UTR-5UTR	ENST00000403565	ENST00000538784		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
Frame-shit	ENST00000313237	ENST00000330579		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000313237	ENST00000535343		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000313237	ENST00000538784		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
Frame-shit	ENST00000396103	ENST00000330579		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000396103	ENST00000535343		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000396103	ENST00000538784		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
Frame-shit	ENST00000404079	ENST00000330579		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000404079	ENST00000535343		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000404079	ENST00000538784		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
Frame-shit	ENST00000447824	ENST00000330579		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000447824	ENST00000535343		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000447824	ENST00000538784		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000462631	ENST00000330579		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
intron-intron	ENST00000462631	ENST00000535343		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000462631	ENST00000538784		TCGA	RV	PRAD	TCGA-XK-AAJR-01A	PHF21B	chr22	45404426	-	NOC4L	chr12	132635526	+
In-frame	ENST00000371117	ENST00000379918		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000371117	ENST00000502583		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000371117	ENST00000296742		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000371117	ENST00000512086		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000371117	ENST00000338150		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000509324		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000340994	ENST00000379918		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000340994	ENST00000502583		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000340994	ENST00000296742		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000340994	ENST00000512086		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000340994	ENST00000338150		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000509324		TCGA	RV	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	CAGE1	chr6	7334323	-
In-frame	ENST00000393409	ENST00000327532		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
5CDS-intron	ENST00000393409	ENST00000488595		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
5CDS-intron	ENST00000393409	ENST00000469243		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
In-frame	ENST00000251772	ENST00000327532		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
5CDS-intron	ENST00000251772	ENST00000488595		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
5CDS-intron	ENST00000251772	ENST00000469243		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
intron-3CDS	ENST00000505278	ENST00000327532		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
intron-intron	ENST00000505278	ENST00000488595		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
intron-intron	ENST00000505278	ENST00000469243		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PLXNA1	chr3	126708630	+	DZIP1L	chr3	137811386	-
In-frame	ENST00000228347	ENST00000315596		TCGA	RV	PRAD	TCGA-HC-7817-01B	POLR3B	chr12	106751729	+	PDS5B	chr13	33315218	+
intron-3CDS	ENST00000539066	ENST00000315596		TCGA	RV	PRAD	TCGA-HC-7817-01B	POLR3B	chr12	106751729	+	PDS5B	chr13	33315218	+
intron-3CDS	ENST00000549195	ENST00000315596		TCGA	RV	PRAD	TCGA-HC-7817-01B	POLR3B	chr12	106751729	+	PDS5B	chr13	33315218	+
5CDS-5UTR	ENST00000367866	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000367866	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-3UTR	ENST00000367866	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000367866	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000452019	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000452019	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-3UTR	ENST00000452019	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000452019	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000429375	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000429375	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-3UTR	ENST00000429375	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000429375	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
3UTR-5UTR	ENST00000367865	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
3UTR-5UTR	ENST00000367865	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
3UTR-3UTR	ENST00000367865	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
3UTR-5UTR	ENST00000367865	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000541643	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000541643	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-3UTR	ENST00000541643	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000541643	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000420254	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000420254	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-3UTR	ENST00000420254	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000420254	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000367862	ENST00000367750		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000367862	ENST00000402921		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-3UTR	ENST00000367862	ENST00000469112		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000367862	ENST00000354841		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	POU2F1	chr1	167353188	+	FMO1	chr1	171227221	+
5CDS-5UTR	ENST00000261207	ENST00000254636		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000261207	ENST00000449247		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000261207	ENST00000410111		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000261207	ENST00000442664		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000261207	ENST00000409051		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-intron	ENST00000261207	ENST00000490238		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000450142	ENST00000254636		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000450142	ENST00000449247		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000450142	ENST00000410111		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000450142	ENST00000442664		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000450142	ENST00000409051		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-intron	ENST00000450142	ENST00000490238		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000437004	ENST00000254636		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000437004	ENST00000449247		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000437004	ENST00000410111		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000437004	ENST00000442664		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000437004	ENST00000409051		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-intron	ENST00000437004	ENST00000490238		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
intron-5UTR	ENST00000546369	ENST00000254636		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
intron-5UTR	ENST00000546369	ENST00000449247		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
intron-5UTR	ENST00000546369	ENST00000410111		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
intron-5UTR	ENST00000546369	ENST00000442664		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
intron-5UTR	ENST00000546369	ENST00000409051		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
intron-intron	ENST00000546369	ENST00000490238		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000550107	ENST00000254636		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000550107	ENST00000449247		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000550107	ENST00000410111		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000550107	ENST00000442664		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-5UTR	ENST00000550107	ENST00000409051		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-intron	ENST00000550107	ENST00000490238		TCGA	RV	PRAD	TCGA-VN-A88P-01A	PPP1R12A	chr12	80328475	-	IMMT	chr2	86408495	-
5CDS-intron	ENST00000292539	ENST00000466411		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-5UTR	ENST00000292539	ENST00000435050		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-5UTR	ENST00000292539	ENST00000431918		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-5UTR	ENST00000292539	ENST00000340958		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
intron-intron	ENST00000529009	ENST00000466411		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
intron-5UTR	ENST00000529009	ENST00000435050		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
intron-5UTR	ENST00000529009	ENST00000431918		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
intron-5UTR	ENST00000529009	ENST00000340958		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-intron	ENST00000435887	ENST00000466411		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-5UTR	ENST00000435887	ENST00000435050		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-5UTR	ENST00000435887	ENST00000431918		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
5CDS-5UTR	ENST00000435887	ENST00000340958		TCGA	RV	PRAD	TCGA-HC-7748-01A	PPP1R16A	chr8	145727504	+	CLDN4	chr7	73245329	+
3UTR-intron	ENST00000296666	ENST00000311028		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000296666	ENST00000395923		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000296666	ENST00000220931		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000296666	ENST00000521599		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000296666	ENST00000522951		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000296666	ENST00000519508		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000296666	ENST00000521371		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000311028		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000395923		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000220931		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000521599		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000522951		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000519508		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000442138	ENST00000521371		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000311028		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000395923		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000220931		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000521599		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000522951		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000519508		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000512635	ENST00000521371		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000311028		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000395923		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000220931		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000521599		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000522951		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000519508		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
intron-intron	ENST00000513427	ENST00000521371		TCGA	RV	PRAD	TCGA-HC-8256-01A	PRRC1	chr5	126890773	+	NCALD	chr8	102813898	-
Frame-shit	ENST00000389286	ENST00000438423		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000389286	ENST00000267811		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000389286	ENST00000452095		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000389286	ENST00000333725		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000389286	ENST00000557843		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000389286	ENST00000560764		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000389286	ENST00000543579		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000389286	ENST00000537840		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000389286	ENST00000343827		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000389286	ENST00000559710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000389286	ENST00000559703		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000561292	ENST00000438423		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000561292	ENST00000267811		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000561292	ENST00000452095		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000561292	ENST00000333725		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
Frame-shit	ENST00000561292	ENST00000557843		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000561292	ENST00000560764		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000561292	ENST00000543579		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000561292	ENST00000537840		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000561292	ENST00000343827		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000561292	ENST00000559710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000561292	ENST00000559703		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRTG	chr15	56032580	-	TCF12	chr15	57484356	+
5CDS-intron	ENST00000397887	ENST00000466411		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000397887	ENST00000435050		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000397887	ENST00000431918		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000397887	ENST00000340958		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-intron	ENST00000330938	ENST00000466411		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000330938	ENST00000435050		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000330938	ENST00000431918		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000330938	ENST00000340958		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-intron	ENST00000445724	ENST00000466411		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000445724	ENST00000435050		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000445724	ENST00000431918		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000445724	ENST00000340958		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-intron	ENST00000397886	ENST00000466411		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000397886	ENST00000435050		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000397886	ENST00000431918		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000397886	ENST00000340958		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-intron	ENST00000494690	ENST00000466411		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000494690	ENST00000435050		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000494690	ENST00000431918		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000494690	ENST00000340958		TCGA	RV	PRAD	TCGA-EJ-7784-01A	PTTG1IP	chr21	46269500	-	CLDN4	chr7	73245193	+
Frame-shit	ENST00000424085	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000424085	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000424085	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000257075	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000257075	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000257075	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000373747	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000373747	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000373747	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000426105	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000426105	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000426105	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000440538	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000440538	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000440538	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
In-frame	ENST00000373741	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
In-frame	ENST00000373741	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000373741	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000423018	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
Frame-shit	ENST00000423018	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000423018	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
In-frame	ENST00000373742	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
In-frame	ENST00000373742	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000373742	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5UTR-3CDS	ENST00000490546	ENST00000357308		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5UTR-3CDS	ENST00000490546	ENST00000361060		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
5UTR-5UTR	ENST00000490546	ENST00000494201		TCGA	RV	PRAD	TCGA-J4-A6G3-01A	PUM1	chr1	31452909	-	GFPT1	chr2	69601245	-
3UTR-3UTR	ENST00000594800	ENST00000586651		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000247977		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000589626		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000588922		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000585379		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000591009		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000592067		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000594800	ENST00000586469		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-intron	ENST00000594800	ENST00000586073		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000586651		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000247977		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000589626		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000588922		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000585379		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000591009		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000592067		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-3UTR	ENST00000602069	ENST00000586469		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
intron-intron	ENST00000602069	ENST00000586073		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000586651		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000247977		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000589626		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000588922		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000585379		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000591009		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000592067		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-3UTR	ENST00000357052	ENST00000586469		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
3UTR-intron	ENST00000357052	ENST00000586073		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RAB4B	chr19	41292883	+	FBXL12	chr19	9922393	-
In-frame	ENST00000367006	ENST00000543470		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000367006	ENST00000366960		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000367006	ENST00000366959		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-5UTR	ENST00000367006	ENST00000543354		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-3UTR	ENST00000367006	ENST00000490299		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000452621	ENST00000543470		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000452621	ENST00000366960		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000452621	ENST00000366959		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-5UTR	ENST00000452621	ENST00000543354		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-3UTR	ENST00000452621	ENST00000490299		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000419091	ENST00000543470		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000419091	ENST00000366960		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000419091	ENST00000366959		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-5UTR	ENST00000419091	ENST00000543354		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-3UTR	ENST00000419091	ENST00000490299		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000367005	ENST00000543470		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000367005	ENST00000366960		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000367005	ENST00000366959		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-5UTR	ENST00000367005	ENST00000543354		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
5CDS-3UTR	ENST00000367005	ENST00000490299		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
intron-3CDS	ENST00000526255	ENST00000543470		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
intron-3CDS	ENST00000526255	ENST00000366960		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
intron-3CDS	ENST00000526255	ENST00000366959		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
intron-5UTR	ENST00000526255	ENST00000543354		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
intron-3UTR	ENST00000526255	ENST00000490299		TCGA	RV	PRAD	TCGA-CH-5790-01A	RCOR3	chr1	211477482	+	RPS6KC1	chr1	213341201	+
In-frame	ENST00000341329	ENST00000254624		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
In-frame	ENST00000341329	ENST00000334503		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000341329	ENST00000519656		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000341329	ENST00000521940		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
In-frame	ENST00000392062	ENST00000254624		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
In-frame	ENST00000392062	ENST00000334503		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000392062	ENST00000519656		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000392062	ENST00000521940		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
In-frame	ENST00000409053	ENST00000254624		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
In-frame	ENST00000409053	ENST00000334503		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
5CDS-5UTR	ENST00000409053	ENST00000519656		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
5CDS-intron	ENST00000409053	ENST00000521940		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
3UTR-3CDS	ENST00000493526	ENST00000254624		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
3UTR-3CDS	ENST00000493526	ENST00000334503		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
3UTR-5UTR	ENST00000493526	ENST00000519656		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
3UTR-intron	ENST00000493526	ENST00000521940		TCGA	RV	PRAD	TCGA-CH-5751-01A	RHBDD1	chr2	227779067	+	EFR3A	chr8	132952746	+
intron-5UTR	ENST00000549920	ENST00000392951		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000549920	ENST00000530649		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000549920	ENST00000532870		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-5UTR	ENST00000550645	ENST00000392951		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000550645	ENST00000530649		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000550645	ENST00000532870		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-5UTR	ENST00000552588	ENST00000392951		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000552588	ENST00000530649		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000552588	ENST00000532870		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-5UTR	ENST00000549273	ENST00000392951		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000549273	ENST00000530649		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
intron-intron	ENST00000549273	ENST00000532870		TCGA	RV	PRAD	TCGA-VN-A88I-01A	RPL18	chr19	49118650	-	TAGLN	chr11	117070098	+
5CDS-intron	ENST00000529163	ENST00000339570		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000415380		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000261693		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000376788		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000546215		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000535005		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000541205		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000540495		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000529163	ENST00000544327		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000339570		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000415380		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000261693		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000376788		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000546215		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000535005		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000541205		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000540495		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000394920	ENST00000544327		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000339570		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000415380		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000261693		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000376788		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000546215		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000535005		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000541205		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000540495		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000527914	ENST00000544327		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000339570		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000415380		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000261693		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000376788		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000546215		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000535005		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000541205		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000540495		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
5CDS-intron	ENST00000262584	ENST00000544327		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000339570		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000415380		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000261693		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000376788		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000546215		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000535005		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000541205		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000540495		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
intron-intron	ENST00000528957	ENST00000544327		TCGA	RV	PRAD	TCGA-EJ-5512-01A	RPL8	chr8	146015154	-	SCARB1	chr12	125324217	-
3UTR-3CDS	ENST00000260379	ENST00000392314		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
3UTR-5UTR	ENST00000260379	ENST00000272771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
3UTR-intron	ENST00000260379	ENST00000487771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
3UTR-intron	ENST00000260379	ENST00000409056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-3CDS	ENST00000357790	ENST00000392314		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-5UTR	ENST00000357790	ENST00000272771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-intron	ENST00000357790	ENST00000487771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-intron	ENST00000357790	ENST00000409056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-3CDS	ENST00000560274	ENST00000392314		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-5UTR	ENST00000560274	ENST00000272771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-intron	ENST00000560274	ENST00000487771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
intron-intron	ENST00000560274	ENST00000409056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	RPLP1	chr15	69748172	+	TMEFF2	chr2	193059642	-
In-frame	ENST00000321153	ENST00000336375		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000321153	ENST00000475741		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000321153	ENST00000351273		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000321153	ENST00000489084		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
Frame-shit	ENST00000532004	ENST00000336375		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000532004	ENST00000475741		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000532004	ENST00000351273		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000532004	ENST00000489084		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
Frame-shit	ENST00000530797	ENST00000336375		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000530797	ENST00000475741		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000530797	ENST00000351273		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000530797	ENST00000489084		TCGA	RV	PRAD	TCGA-EJ-7125-01A	RPLP2	chr11	812874	+	ACPP	chr3	132036211	+
5CDS-intron	ENST00000601521	ENST00000417172		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000361388		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000422748		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000361675		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000361901		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000393118		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000495522		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000424922		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000543443		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000601521	ENST00000466704		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000417172		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000361388		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000422748		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000361675		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000361901		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000393118		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000495522		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000424922		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000543443		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598098	ENST00000466704		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000417172		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000361388		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000422748		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000361675		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000361901		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000393118		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000495522		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000424922		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000543443		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000598495	ENST00000466704		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000417172		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000361388		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000422748		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000361675		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000361901		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000393118		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000495522		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000424922		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000543443		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000196551	ENST00000466704		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000417172		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000361388		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000422748		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000361675		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000361901		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000393118		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000495522		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000424922		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000543443		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
5CDS-intron	ENST00000596046	ENST00000466704		TCGA	RV	PRAD	TCGA-CH-5771-01A	RPS5	chr19	58906170	+	CALD1	chr7	134430218	+
intron-intron	ENST00000380394	ENST00000514455		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000511566		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000376817		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000380394	ENST00000512805		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000504726		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000511900		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000456394		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000505461		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000514455		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000511566		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000376817		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000498815	ENST00000512805		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000504726		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000511900		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000456394		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000505461		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000514455		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000511566		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000376817		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000380384	ENST00000512805		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000504726		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000511900		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000456394		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000505461		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000514455		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000511566		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000376817		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-5UTR	ENST00000315377	ENST00000512805		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000504726		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000511900		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000456394		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000505461		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000514455		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000511566		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000376817		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000380381	ENST00000512805		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000504726		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000511900		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000456394		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000505461		TCGA	RV	PRAD	TCGA-EJ-7328-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000537330	ENST00000332900		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
intron-intron	ENST00000537330	ENST00000571868		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
5CDS-5UTR	ENST00000570891	ENST00000332900		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
5CDS-intron	ENST00000570891	ENST00000571868		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
5CDS-5UTR	ENST00000306801	ENST00000332900		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
5CDS-intron	ENST00000306801	ENST00000571868		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
5CDS-5UTR	ENST00000544334	ENST00000332900		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
5CDS-intron	ENST00000544334	ENST00000571868		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
intron-5UTR	ENST00000575542	ENST00000332900		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
intron-intron	ENST00000575542	ENST00000571868		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RPTOR	chr17	78617610	+	TMEM105	chr17	79288281	-
Frame-shit	ENST00000554335	ENST00000535741		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000554335	ENST00000510413		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000554335	ENST00000503716		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000554335	ENST00000357115		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000554335	ENST00000507224		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000251091	ENST00000535741		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000251091	ENST00000510413		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000251091	ENST00000503716		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000251091	ENST00000357115		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000251091	ENST00000507224		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
3UTR-3CDS	ENST00000555112	ENST00000535741		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
3UTR-3CDS	ENST00000555112	ENST00000510413		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
3UTR-intron	ENST00000555112	ENST00000503716		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
3UTR-intron	ENST00000555112	ENST00000357115		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
3UTR-intron	ENST00000555112	ENST00000507224		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000392067	ENST00000535741		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000392067	ENST00000510413		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000392067	ENST00000503716		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000392067	ENST00000357115		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000392067	ENST00000507224		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000357634	ENST00000535741		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
Frame-shit	ENST00000357634	ENST00000510413		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000357634	ENST00000503716		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000357634	ENST00000357115		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
5CDS-intron	ENST00000357634	ENST00000507224		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
intron-3CDS	ENST00000555192	ENST00000535741		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
intron-3CDS	ENST00000555192	ENST00000510413		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
intron-intron	ENST00000555192	ENST00000503716		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
intron-intron	ENST00000555192	ENST00000357115		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
intron-intron	ENST00000555192	ENST00000507224		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	SAMD4A	chr14	55034830	+	LRBA	chr4	151842445	-
intron-3UTR	ENST00000379251	ENST00000346329		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-3UTR	ENST00000379251	ENST00000301843		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-intron	ENST00000379251	ENST00000527622		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-intron	ENST00000379251	ENST00000376561		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-intron	ENST00000379251	ENST00000538675		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-3UTR	ENST00000379253	ENST00000346329		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-3UTR	ENST00000379253	ENST00000301843		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-intron	ENST00000379253	ENST00000527622		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-intron	ENST00000379253	ENST00000376561		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
intron-intron	ENST00000379253	ENST00000538675		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
5CDS-3UTR	ENST00000379254	ENST00000346329		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
5CDS-3UTR	ENST00000379254	ENST00000301843		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
5CDS-intron	ENST00000379254	ENST00000527622		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
5CDS-intron	ENST00000379254	ENST00000376561		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
5CDS-intron	ENST00000379254	ENST00000538675		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-3UTR	ENST00000379270	ENST00000346329		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-3UTR	ENST00000379270	ENST00000301843		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-intron	ENST00000379270	ENST00000527622		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-intron	ENST00000379270	ENST00000376561		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-intron	ENST00000379270	ENST00000538675		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-3UTR	ENST00000489394	ENST00000346329		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-3UTR	ENST00000489394	ENST00000301843		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-intron	ENST00000489394	ENST00000527622		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-intron	ENST00000489394	ENST00000376561		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
3UTR-intron	ENST00000489394	ENST00000538675		TCGA	RV	PRAD	TCGA-EJ-7784-01A	SAT1	chrX	23804230	+	CTTN	chr11	70281572	+
In-frame	ENST00000525364	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000525364	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000525364	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000525364	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000525364	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000270176	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000270176	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000270176	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000270176	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000270176	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000420247	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000420247	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000420247	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000420247	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000420247	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
In-frame	ENST00000533862	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000533862	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000533862	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000533862	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000533862	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
In-frame	ENST00000279270	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000279270	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000279270	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000279270	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000279270	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000524944	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000524944	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000524944	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000524944	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000524944	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
intron-3CDS	ENST00000527009	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
intron-3CDS	ENST00000527009	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
intron-intron	ENST00000527009	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
intron-intron	ENST00000527009	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
intron-intron	ENST00000527009	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000534462	ENST00000324695		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
Frame-shit	ENST00000534462	ENST00000433712		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000534462	ENST00000355722		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000534462	ENST00000409625		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5CDS-intron	ENST00000534462	ENST00000466594		TCGA	RV	PRAD	TCGA-EJ-7327-01A	SCYL1	chr11	65306175	+	TRPM8	chr2	234826043	+
5UTR-3CDS	ENST00000379122	ENST00000249636		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
5UTR-3CDS	ENST00000379122	ENST00000545237		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
5UTR-intron	ENST00000379122	ENST00000567417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
5UTR-3CDS	ENST00000332496	ENST00000249636		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
5UTR-3CDS	ENST00000332496	ENST00000545237		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
5UTR-intron	ENST00000332496	ENST00000567417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
intron-3CDS	ENST00000560263	ENST00000249636		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
intron-3CDS	ENST00000560263	ENST00000545237		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
intron-intron	ENST00000560263	ENST00000567417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
intron-3CDS	ENST00000411539	ENST00000249636		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
intron-3CDS	ENST00000411539	ENST00000545237		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
intron-intron	ENST00000411539	ENST00000567417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	SEMA4B	chr15	90728313	+	PIAS1	chr15	68479880	+
Frame-shit	ENST00000373202	ENST00000314100		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
Frame-shit	ENST00000373202	ENST00000481247		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
Frame-shit	ENST00000373202	ENST00000419706		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
Frame-shit	ENST00000373202	ENST00000408958		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
Frame-shit	ENST00000373202	ENST00000403056		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
3UTR-3CDS	ENST00000486993	ENST00000314100		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
3UTR-3CDS	ENST00000486993	ENST00000481247		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
3UTR-3CDS	ENST00000486993	ENST00000419706		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
3UTR-3CDS	ENST00000486993	ENST00000408958		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
3UTR-3CDS	ENST00000486993	ENST00000403056		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SGPL1	chr10	72576636	+	BTBD9	chr6	38160373	-
In-frame	ENST00000230640	ENST00000282572		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	SKIV2L2	chr5	54623606	+	CCNO	chr5	54528374	-
In-frame	ENST00000545714	ENST00000282572		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	SKIV2L2	chr5	54623606	+	CCNO	chr5	54528374	-
intron-3CDS	ENST00000504388	ENST00000282572		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	SKIV2L2	chr5	54623606	+	CCNO	chr5	54528374	-
intron-3CDS	ENST00000454800	ENST00000331320		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
intron-3CDS	ENST00000454800	ENST00000406191		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
intron-3CDS	ENST00000454800	ENST00000405646		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
intron-3CDS	ENST00000454800	ENST00000435036		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000398341	ENST00000331320		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000398341	ENST00000406191		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000398341	ENST00000405646		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000398341	ENST00000435036		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000352133	ENST00000331320		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000352133	ENST00000406191		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000352133	ENST00000405646		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
In-frame	ENST00000352133	ENST00000435036		TCGA	RV	PRAD	TCGA-EJ-5504-01A	SLC37A1	chr21	43988548	+	MTA1	chr14	105932763	+
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A7NG-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7752-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
Frame-shit	ENST00000544865	ENST00000225296		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000544865	ENST00000433302		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000263073	ENST00000225296		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000263073	ENST00000433302		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000354901	ENST00000225296		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000354901	ENST00000433302		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000536871	ENST00000225296		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000536871	ENST00000433302		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
intron-3CDS	ENST00000573166	ENST00000225296		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
intron-3CDS	ENST00000573166	ENST00000433302		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SMG6	chr17	2075952	-	DHX33	chr17	5347833	-
Frame-shit	ENST00000521485	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000521485	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000369694	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000369694	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000195649	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000195649	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000439399	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000439399	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000428679	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000428679	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
intron-3CDS	ENST00000437520	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
intron-5UTR	ENST00000437520	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000521743	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000521743	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000520302	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
5CDS-5UTR	ENST00000520302	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
intron-3CDS	ENST00000520213	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
intron-5UTR	ENST00000520213	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
intron-3CDS	ENST00000519133	ENST00000379494		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
intron-5UTR	ENST00000519133	ENST00000494525		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	SNAP91	chr6	84303197	-	SMPX	chrX	21761954	-
Frame-shit	ENST00000595535	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5CDS-intron	ENST00000595535	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
Frame-shit	ENST00000352632	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5CDS-intron	ENST00000352632	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
intron-3CDS	ENST00000344104	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
intron-intron	ENST00000344104	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
Frame-shit	ENST00000338932	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5CDS-intron	ENST00000338932	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
Frame-shit	ENST00000598249	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5CDS-intron	ENST00000598249	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
Frame-shit	ENST00000392025	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5CDS-intron	ENST00000392025	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
Frame-shit	ENST00000392023	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5CDS-intron	ENST00000392023	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
intron-3CDS	ENST00000593816	ENST00000222345		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
intron-intron	ENST00000593816	ENST00000476317		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SPTBN4	chr19	41040250	+	SIPA1L3	chr19	38673159	+
5UTR-5UTR	ENST00000375400	ENST00000229043		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-5UTR	ENST00000375400	ENST00000454402		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-5UTR	ENST00000375400	ENST00000392542		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-intron	ENST00000375400	ENST00000543153		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-5UTR	ENST00000375398	ENST00000229043		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-5UTR	ENST00000375398	ENST00000454402		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-5UTR	ENST00000375398	ENST00000392542		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5UTR-intron	ENST00000375398	ENST00000543153		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000355867	ENST00000229043		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000355867	ENST00000454402		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000355867	ENST00000392542		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-intron	ENST00000355867	ENST00000543153		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000535393	ENST00000229043		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000535393	ENST00000454402		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000535393	ENST00000392542		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-intron	ENST00000535393	ENST00000543153		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000460007	ENST00000229043		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000460007	ENST00000454402		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000460007	ENST00000392542		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-intron	ENST00000460007	ENST00000543153		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000538146	ENST00000229043		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000538146	ENST00000454402		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-5UTR	ENST00000538146	ENST00000392542		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
intron-intron	ENST00000538146	ENST00000543153		TCGA	RV	PRAD	TCGA-CH-5791-01A	SVIL	chr10	30024680	-	RFC5	chr12	118456877	+
5CDS-5UTR	ENST00000344293	ENST00000395255		TCGA	RV	PRAD	TCGA-G9-6356-01A	TAF3	chr10	7866523	+	ZNF365	chr10	64135940	+
5CDS-5UTR	ENST00000344293	ENST00000410046		TCGA	RV	PRAD	TCGA-G9-6356-01A	TAF3	chr10	7866523	+	ZNF365	chr10	64135940	+
5CDS-intron	ENST00000344293	ENST00000395251		TCGA	RV	PRAD	TCGA-G9-6356-01A	TAF3	chr10	7866523	+	ZNF365	chr10	64135940	+
5CDS-5UTR	ENST00000344293	ENST00000395254		TCGA	RV	PRAD	TCGA-G9-6356-01A	TAF3	chr10	7866523	+	ZNF365	chr10	64135940	+
5CDS-intron	ENST00000344293	ENST00000466727		TCGA	RV	PRAD	TCGA-G9-6356-01A	TAF3	chr10	7866523	+	ZNF365	chr10	64135940	+
5CDS-intron	ENST00000344293	ENST00000395249		TCGA	RV	PRAD	TCGA-G9-6356-01A	TAF3	chr10	7866523	+	ZNF365	chr10	64135940	+
5CDS-5UTR	ENST00000344749	ENST00000238483		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000344749	ENST00000233607		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000344749	ENST00000535453		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000262965	ENST00000238483		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000262965	ENST00000233607		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000262965	ENST00000535453		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000453954	ENST00000238483		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000453954	ENST00000233607		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000453954	ENST00000535453		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000395423	ENST00000238483		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000395423	ENST00000233607		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000395423	ENST00000535453		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000588136	ENST00000238483		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000588136	ENST00000233607		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-5UTR	ENST00000588136	ENST00000535453		TCGA	RV	PRAD	TCGA-HC-7744-01A	TCF3	chr19	1619110	-	APC2	chr19	1452983	+
5CDS-intron	ENST00000265686	ENST00000563675		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000265686	ENST00000541464		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000265686	ENST00000381414		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000265686	ENST00000396229		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000265686	ENST00000542583		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000265686	ENST00000219821		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000265686	ENST00000561503		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000265686	ENST00000564959		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000532635	ENST00000563675		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000532635	ENST00000541464		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000532635	ENST00000381414		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000532635	ENST00000396229		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-5UTR	ENST00000532635	ENST00000542583		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000532635	ENST00000219821		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000532635	ENST00000561503		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
5CDS-intron	ENST00000532635	ENST00000564959		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-intron	ENST00000530802	ENST00000563675		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-5UTR	ENST00000530802	ENST00000541464		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-5UTR	ENST00000530802	ENST00000381414		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-5UTR	ENST00000530802	ENST00000396229		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-5UTR	ENST00000530802	ENST00000542583		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-intron	ENST00000530802	ENST00000219821		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-intron	ENST00000530802	ENST00000561503		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
intron-intron	ENST00000530802	ENST00000564959		TCGA	RV	PRAD	TCGA-G9-6351-01A	TCIRG1	chr11	67818362	+	TMC5	chr16	19451282	+
Frame-shit	ENST00000355295	ENST00000341700		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
5CDS-intron	ENST00000355295	ENST00000464095		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
Frame-shit	ENST00000422139	ENST00000341700		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
5CDS-intron	ENST00000422139	ENST00000464095		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
intron-3CDS	ENST00000540902	ENST00000341700		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
intron-intron	ENST00000540902	ENST00000464095		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
intron-3CDS	ENST00000492428	ENST00000341700		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
intron-intron	ENST00000492428	ENST00000464095		TCGA	RV	PRAD	TCGA-HC-7821-01A	TDRD7	chr9	100194520	+	GNA14	chr9	80144169	-
In-frame	ENST00000422113	ENST00000553106		TCGA	RV	PRAD	TCGA-HC-7736-01A	TMEM132D	chr12	129694065	-	PAH	chr12	103306676	-
In-frame	ENST00000422113	ENST00000307000		TCGA	RV	PRAD	TCGA-HC-7736-01A	TMEM132D	chr12	129694065	-	PAH	chr12	103306676	-
5CDS-5UTR	ENST00000422113	ENST00000551988		TCGA	RV	PRAD	TCGA-HC-7736-01A	TMEM132D	chr12	129694065	-	PAH	chr12	103306676	-
intron-3CDS	ENST00000389441	ENST00000553106		TCGA	RV	PRAD	TCGA-HC-7736-01A	TMEM132D	chr12	129694065	-	PAH	chr12	103306676	-
intron-3CDS	ENST00000389441	ENST00000307000		TCGA	RV	PRAD	TCGA-HC-7736-01A	TMEM132D	chr12	129694065	-	PAH	chr12	103306676	-
intron-5UTR	ENST00000389441	ENST00000551988		TCGA	RV	PRAD	TCGA-HC-7736-01A	TMEM132D	chr12	129694065	-	PAH	chr12	103306676	-
Frame-shit	ENST00000340353	ENST00000455756		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000340353	ENST00000418177		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000340353	ENST00000305447		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000340353	ENST00000305432		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000340353	ENST00000393297		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000340353	ENST00000393294		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000532959	ENST00000455756		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000532959	ENST00000418177		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000532959	ENST00000305447		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000532959	ENST00000305432		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000532959	ENST00000393297		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000532959	ENST00000393294		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000305494	ENST00000455756		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000305494	ENST00000418177		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000305494	ENST00000305447		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000305494	ENST00000305432		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000305494	ENST00000393297		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000305494	ENST00000393294		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000535167	ENST00000455756		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
Frame-shit	ENST00000535167	ENST00000418177		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000535167	ENST00000305447		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
In-frame	ENST00000535167	ENST00000305432		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000535167	ENST00000393297		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5CDS-intron	ENST00000535167	ENST00000393294		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
intron-3CDS	ENST00000355734	ENST00000455756		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
intron-3CDS	ENST00000355734	ENST00000418177		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
intron-3CDS	ENST00000355734	ENST00000305447		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
intron-3CDS	ENST00000355734	ENST00000305432		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
intron-intron	ENST00000355734	ENST00000393297		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
intron-intron	ENST00000355734	ENST00000393294		TCGA	RV	PRAD	TCGA-EJ-7115-01A	TMEM135	chr11	87006865	+	GRM5	chr11	88242672	-
5UTR-intron	ENST00000409528	ENST00000409869		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
5UTR-intron	ENST00000409528	ENST00000295095		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
5UTR-intron	ENST00000409528	ENST00000473426		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
5UTR-intron	ENST00000409173	ENST00000409869		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
5UTR-intron	ENST00000409173	ENST00000295095		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
5UTR-intron	ENST00000409173	ENST00000473426		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
intron-intron	ENST00000412401	ENST00000409869		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
intron-intron	ENST00000412401	ENST00000295095		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
intron-intron	ENST00000412401	ENST00000473426		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
intron-intron	ENST00000486293	ENST00000409869		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
intron-intron	ENST00000486293	ENST00000295095		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
intron-intron	ENST00000486293	ENST00000473426		TCGA	RV	PRAD	TCGA-XJ-A83G-01A	TMEM182	chr2	103353472	+	ARHGAP15	chr2	144460988	+
5CDS-intron	ENST00000371348	ENST00000547405		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000452455		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000360610		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000441232		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000392934		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000547509		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000361685		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371348	ENST00000550501		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371348	ENST00000549145		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371348	ENST00000553190		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371348	ENST00000536007		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000541119		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000545503		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371348	ENST00000361466		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000371348	ENST00000551300		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000371348	ENST00000550270		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000547405		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000452455		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000360610		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000441232		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000392934		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000547509		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000361685		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371344	ENST00000550501		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371344	ENST00000549145		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371344	ENST00000553190		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000371344	ENST00000536007		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000541119		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000545503		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000371344	ENST00000361466		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000371344	ENST00000551300		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000371344	ENST00000550270		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000547405		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000452455		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000360610		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000441232		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000392934		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000547509		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000361685		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000234831	ENST00000550501		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000234831	ENST00000549145		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000234831	ENST00000553190		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000234831	ENST00000536007		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000541119		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000545503		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000234831	ENST00000361466		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000234831	ENST00000551300		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000234831	ENST00000550270		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000547405		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000452455		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000360610		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000441232		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000392934		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000547509		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000361685		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371341	ENST00000550501		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371341	ENST00000549145		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371341	ENST00000553190		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371341	ENST00000536007		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000541119		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000545503		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371341	ENST00000361466		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000371341	ENST00000551300		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000371341	ENST00000550270		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000547405		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000452455		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000360610		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000441232		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000392934		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000547509		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000361685		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000470395	ENST00000550501		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000470395	ENST00000549145		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000470395	ENST00000553190		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000470395	ENST00000536007		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000541119		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000545503		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000470395	ENST00000361466		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000470395	ENST00000551300		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000470395	ENST00000550270		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000547405		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000452455		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000360610		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000441232		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000392934		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000547509		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000361685		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371337	ENST00000550501		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371337	ENST00000549145		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371337	ENST00000553190		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000371337	ENST00000536007		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000541119		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000545503		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000371337	ENST00000361466		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000371337	ENST00000551300		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000371337	ENST00000550270		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMEM59	chr1	54497349	-	MYBPC1	chr12	102008274	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6356-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6364-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
In-frame	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
Frame-shit	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
Frame-shit	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
Frame-shit	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
Frame-shit	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
Frame-shit	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
Frame-shit	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-3CDS	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-3CDS	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-3CDS	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-3CDS	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-3CDS	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-3CDS	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
intron-5UTR	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42866283	-	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000266712	ENST00000512055		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMTC3	chr12	88570096	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000266712	ENST00000429747		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMTC3	chr12	88570096	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000266712	ENST00000512332		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMTC3	chr12	88570096	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000266712	ENST00000511604		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMTC3	chr12	88570096	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000266712	ENST00000502818		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMTC3	chr12	88570096	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000266712	ENST00000503204		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMTC3	chr12	88570096	+	CPNE4	chr3	131759165	-
intron-5UTR	ENST00000463284	ENST00000325321		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000463284	ENST00000391810		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-intron	ENST00000463284	ENST00000358049		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-intron	ENST00000463284	ENST00000597509		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000358435	ENST00000325321		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000358435	ENST00000391810		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-intron	ENST00000358435	ENST00000358049		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
intron-intron	ENST00000358435	ENST00000597509		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000405021	ENST00000325321		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000405021	ENST00000391810		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000405021	ENST00000358049		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000405021	ENST00000597509		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000372879	ENST00000325321		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000372879	ENST00000391810		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000372879	ENST00000358049		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000372879	ENST00000597509		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TOMM7	chr7	22852592	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000304877	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000304877	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000304877	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000304877	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000304877	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000304877	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000304877	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-5UTR	ENST00000534000	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000534000	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000534000	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000534000	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000534000	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000534000	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000534000	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-5UTR	ENST00000368402	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368402	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368402	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368402	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368402	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368402	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368402	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-5UTR	ENST00000368388	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368388	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368388	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368388	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368388	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368388	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000368388	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-5UTR	ENST00000527711	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000527711	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000527711	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000527711	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000527711	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000527711	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000527711	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-5UTR	ENST00000528193	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000528193	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000528193	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000528193	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000528193	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000528193	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
5CDS-intron	ENST00000528193	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-5UTR	ENST00000532429	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000532429	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000532429	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000532429	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000532429	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000532429	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000532429	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-5UTR	ENST00000534199	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000534199	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000534199	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000534199	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000534199	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000534199	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000534199	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-5UTR	ENST00000392482	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000392482	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000392482	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000392482	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000392482	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000392482	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000392482	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-5UTR	ENST00000524679	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000524679	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000524679	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000524679	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000524679	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000524679	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000524679	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-5UTR	ENST00000530868	ENST00000368134		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000530868	ENST00000457563		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000530868	ENST00000439090		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000530868	ENST00000437477		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000530868	ENST00000532763		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000530868	ENST00000533296		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
intron-intron	ENST00000530868	ENST00000324172		TCGA	RV	PRAD	TCGA-KK-A8IF-01A	TPD52L1	chr6	125475116	+	SAMD3	chr6	130634238	-
Frame-shit	ENST00000394132	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394132	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394132	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394132	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394132	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394132	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394132	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394132	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394132	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394132	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394132	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394136	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394136	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394136	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394136	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394136	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394136	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394136	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394136	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394136	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394136	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394136	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558613	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558613	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558613	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558613	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558613	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558613	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558613	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558613	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558613	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558613	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558613	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000262074	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000262074	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000262074	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000262074	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000262074	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000262074	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000262074	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000262074	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000262074	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000262074	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000262074	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558663	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558663	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558663	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558663	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
In-frame	ENST00000558663	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558663	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558663	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558663	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558663	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558663	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000558663	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394135	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394135	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394135	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394135	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394135	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394135	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394135	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394135	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394135	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394135	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394135	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394130	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394130	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394130	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394130	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394130	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394130	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394130	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394130	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394130	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394130	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394130	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394129	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394129	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394129	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394129	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
Frame-shit	ENST00000394129	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394129	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394129	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394129	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394129	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394129	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
5CDS-3UTR	ENST00000394129	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3CDS	ENST00000490671	ENST00000438423		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3CDS	ENST00000490671	ENST00000267811		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3CDS	ENST00000490671	ENST00000452095		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3CDS	ENST00000490671	ENST00000333725		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3CDS	ENST00000490671	ENST00000557843		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3UTR	ENST00000490671	ENST00000560764		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3UTR	ENST00000490671	ENST00000543579		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3UTR	ENST00000490671	ENST00000537840		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3UTR	ENST00000490671	ENST00000343827		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3UTR	ENST00000490671	ENST00000559710		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3UTR	ENST00000490671	ENST00000559703		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TTC23	chr15	99768738	-	TCF12	chr15	57543548	+
intron-3CDS	ENST00000331018	ENST00000290429		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000331018	ENST00000327555		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
intron-5UTR	ENST00000331018	ENST00000464244		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
Frame-shit	ENST00000266254	ENST00000290429		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
Frame-shit	ENST00000266254	ENST00000327555		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
5CDS-5UTR	ENST00000266254	ENST00000464244		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000445824	ENST00000290429		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000445824	ENST00000327555		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
intron-5UTR	ENST00000445824	ENST00000464244		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	TTLL1	chr22	43447807	-	MCAT	chr22	43537255	-
5CDS-5UTR	ENST00000367879	ENST00000598095		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000367879	ENST00000426897		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000367879	ENST00000323906		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000367879	ENST00000535669		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000367879	ENST00000596426		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000372212	ENST00000598095		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000372212	ENST00000426897		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000372212	ENST00000323906		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-5UTR	ENST00000372212	ENST00000535669		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
5CDS-3UTR	ENST00000372212	ENST00000596426		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000462329	ENST00000598095		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000462329	ENST00000426897		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000462329	ENST00000323906		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000462329	ENST00000535669		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-3UTR	ENST00000462329	ENST00000596426		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000469256	ENST00000598095		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000469256	ENST00000426897		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000469256	ENST00000323906		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000469256	ENST00000535669		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-3UTR	ENST00000469256	ENST00000596426		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000470820	ENST00000598095		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000470820	ENST00000426897		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000470820	ENST00000323906		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-5UTR	ENST00000470820	ENST00000535669		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
intron-3UTR	ENST00000470820	ENST00000596426		TCGA	RV	PRAD	TCGA-YL-A8S9-01A	UCK2	chr1	165797169	+	CD37	chr19	49838971	+
In-frame	ENST00000415430	ENST00000262843		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
In-frame	ENST00000415430	ENST00000443968		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
In-frame	ENST00000217957	ENST00000262843		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
In-frame	ENST00000217957	ENST00000443968		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
intron-3CDS	ENST00000485533	ENST00000262843		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
intron-3CDS	ENST00000485533	ENST00000443968		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VSIG1	chrX	107288409	+	MID2	chrX	107169324	+
Frame-shit	ENST00000298767	ENST00000263593		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000298767	ENST00000545756		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000298767	ENST00000525730		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000372075	ENST00000263593		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
intron-intron	ENST00000372075	ENST00000545756		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
intron-intron	ENST00000372075	ENST00000525730		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000263070	ENST00000263593		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
intron-intron	ENST00000263070	ENST00000545756		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
intron-intron	ENST00000263070	ENST00000525730		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000484070	ENST00000263593		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000484070	ENST00000545756		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000484070	ENST00000525730		TCGA	RV	PRAD	TCGA-G9-6356-01A	WAPAL	chr10	88195014	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000393845	ENST00000492406		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
5CDS-3UTR	ENST00000393845	ENST00000460713		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
Frame-shit	ENST00000295868	ENST00000492406		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
5CDS-3UTR	ENST00000295868	ENST00000460713		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
intron-3CDS	ENST00000475568	ENST00000492406		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
intron-3UTR	ENST00000475568	ENST00000460713		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
intron-3CDS	ENST00000308346	ENST00000492406		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
intron-3UTR	ENST00000308346	ENST00000460713		TCGA	RV	PRAD	TCGA-HC-7230-01A	WDR52	chr3	113135372	-	SLC35A5	chr3	112299393	+
intron-5UTR	ENST00000216037	ENST00000325321		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000216037	ENST00000391810		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-intron	ENST00000216037	ENST00000358049		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-intron	ENST00000216037	ENST00000597509		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000403532	ENST00000325321		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
5CDS-5UTR	ENST00000403532	ENST00000391810		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000403532	ENST00000358049		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000403532	ENST00000597509		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000405219	ENST00000325321		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000405219	ENST00000391810		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-intron	ENST00000405219	ENST00000358049		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-intron	ENST00000405219	ENST00000597509		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000344347	ENST00000325321		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-5UTR	ENST00000344347	ENST00000391810		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-intron	ENST00000344347	ENST00000358049		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
intron-intron	ENST00000344347	ENST00000597509		TCGA	RV	PRAD	TCGA-G9-6348-01A	XBP1	chr22	29190549	-	KLK2	chr19	51376695	+
5CDS-intron	ENST00000268489	ENST00000502271		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000268489	ENST00000504924		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000268489	ENST00000510591		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000268489	ENST00000507646		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000397992	ENST00000502271		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000397992	ENST00000504924		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000397992	ENST00000510591		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
5CDS-intron	ENST00000397992	ENST00000507646		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
intron-intron	ENST00000558842	ENST00000502271		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
intron-intron	ENST00000558842	ENST00000504924		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
intron-intron	ENST00000558842	ENST00000510591		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
intron-intron	ENST00000558842	ENST00000507646		TCGA	RV	PRAD	TCGA-G9-7510-01A	ZFHX3	chr16	72816784	-	ARL15	chr5	53183213	-
intron-5UTR	ENST00000354698	ENST00000318962		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000354698	ENST00000415953		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-intron	ENST00000354698	ENST00000383742		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000427617	ENST00000318962		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000427617	ENST00000415953		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-intron	ENST00000427617	ENST00000383742		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000412564	ENST00000318962		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000412564	ENST00000415953		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-intron	ENST00000412564	ENST00000383742		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000440261	ENST00000318962		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-5UTR	ENST00000440261	ENST00000415953		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-intron	ENST00000440261	ENST00000383742		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
3UTR-5UTR	ENST00000454212	ENST00000318962		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
3UTR-5UTR	ENST00000454212	ENST00000415953		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
3UTR-intron	ENST00000454212	ENST00000383742		TCGA	RV	PRAD	TCGA-J9-A52E-01A	ZNF589	chr3	48298512	+	ALS2CL	chr3	46730955	-
intron-3CDS	ENST00000508784	ENST00000309311		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-intron	ENST00000508784	ENST00000600720		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-3CDS	ENST00000513320	ENST00000309311		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-intron	ENST00000513320	ENST00000600720		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-3CDS	ENST00000379448	ENST00000309311		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-intron	ENST00000379448	ENST00000600720		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-3CDS	ENST00000511534	ENST00000309311		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
intron-intron	ENST00000511534	ENST00000600720		TCGA	RV	PRAD	TCGA-EJ-5511-01A	ZNF827	chr4	146682281	-	EEF2	chr19	3985461	-
5CDS-5UTR	ENST00000369238	ENST00000469606		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5CDS-5UTR	ENST00000369238	ENST00000366994		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5CDS-5UTR	ENST00000369238	ENST00000366993		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5CDS-5UTR	ENST00000369238	ENST00000366992		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5CDS-5UTR	ENST00000369238	ENST00000440600		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5UTR-5UTR	ENST00000460583	ENST00000469606		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5UTR-5UTR	ENST00000460583	ENST00000366994		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5UTR-5UTR	ENST00000460583	ENST00000366993		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5UTR-5UTR	ENST00000460583	ENST00000366992		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
5UTR-5UTR	ENST00000460583	ENST00000440600		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
intron-5UTR	ENST00000392988	ENST00000469606		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
intron-5UTR	ENST00000392988	ENST00000366994		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
intron-5UTR	ENST00000392988	ENST00000366993		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
intron-5UTR	ENST00000392988	ENST00000366992		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
intron-5UTR	ENST00000392988	ENST00000440600		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	ACP6	chr1	147120048	-	INTS7	chr1	212190365	-
In-frame	ENST00000379249	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379249	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379249	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379249	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
In-frame	ENST00000379264	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379264	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379264	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379264	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
In-frame	ENST00000379272	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379272	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379272	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379272	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000379255	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379255	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379255	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379255	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
In-frame	ENST00000296869	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000296869	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000296869	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000296869	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
In-frame	ENST00000379246	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379246	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379246	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379246	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000379244	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379244	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379244	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379244	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000544770	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000544770	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000544770	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000544770	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000543479	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000543479	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000543479	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000543479	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
intron-3CDS	ENST00000477640	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
intron-intron	ENST00000477640	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
intron-intron	ENST00000477640	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
intron-intron	ENST00000477640	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
In-frame	ENST00000357096	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000357096	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000357096	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000357096	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
Frame-shit	ENST00000379240	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379240	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379240	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000379240	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
In-frame	ENST00000431707	ENST00000460006		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000431707	ENST00000379062		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000431707	ENST00000379070		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-intron	ENST00000431707	ENST00000535100		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ACSL6	chr5	131307243	-	CDS2	chr20	5154169	+
5CDS-5UTR	ENST00000535787	ENST00000382303		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000535787	ENST00000489369		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000535787	ENST00000382297		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000535787	ENST00000382293		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000241416	ENST00000382303		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000241416	ENST00000489369		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000241416	ENST00000382297		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000241416	ENST00000382293		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000404590	ENST00000382303		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000404590	ENST00000489369		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000404590	ENST00000382297		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000404590	ENST00000382293		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000495775	ENST00000382303		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
intron-3UTR	ENST00000495775	ENST00000489369		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000495775	ENST00000382297		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
intron-intron	ENST00000495775	ENST00000382293		TCGA	RV	PRAD	TCGA-EJ-7318-01B	ACVR2A	chr2	148672903	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000370944	ENST00000441788		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
5CDS-intron	ENST00000370944	ENST00000313639		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
5CDS-intron	ENST00000370944	ENST00000395095		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-5UTR	ENST00000262346	ENST00000441788		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-intron	ENST00000262346	ENST00000313639		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-intron	ENST00000262346	ENST00000395095		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-5UTR	ENST00000464236	ENST00000441788		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-intron	ENST00000464236	ENST00000313639		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-intron	ENST00000464236	ENST00000395095		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ANKRD13C	chr1	70790536	-	FZR1	chr19	3522954	+
intron-intron	ENST00000507479	ENST00000464344		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
intron-intron	ENST00000507479	ENST00000495694		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
intron-intron	ENST00000507479	ENST00000391980		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
intron-intron	ENST00000507479	ENST00000406593		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
intron-intron	ENST00000507479	ENST00000407095		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
5CDS-intron	ENST00000335174	ENST00000464344		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
5CDS-intron	ENST00000335174	ENST00000495694		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
5CDS-intron	ENST00000335174	ENST00000391980		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
5CDS-intron	ENST00000335174	ENST00000406593		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
5CDS-intron	ENST00000335174	ENST00000407095		TCGA	RV	PRAD	TCGA-G9-6499-01A	ANKRD37	chr4	186321395	+	MTERFD2	chr2	242036128	-
Frame-shit	ENST00000338458	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000338458	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-3CDS	ENST00000496106	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000496106	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-3CDS	ENST00000498517	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000498517	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
Frame-shit	ENST00000296315	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000296315	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
Frame-shit	ENST00000413728	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
5CDS-intron	ENST00000413728	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-3CDS	ENST00000497267	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000497267	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-3CDS	ENST00000495373	ENST00000538689		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000220584		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000446331		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000443614		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000525900		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000528812		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000530664		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000528643		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
intron-intron	ENST00000495373	ENST00000525777		TCGA	RV	PRAD	TCGA-CH-5761-01A	ARHGEF3	chr3	56761449	-	FDFT1	chr8	11653082	+
3UTR-3CDS	ENST00000303329	ENST00000523767		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
3UTR-3CDS	ENST00000303329	ENST00000261797		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
3UTR-intron	ENST00000303329	ENST00000521752		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
3UTR-3CDS	ENST00000533983	ENST00000523767		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
3UTR-3CDS	ENST00000533983	ENST00000261797		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
3UTR-intron	ENST00000533983	ENST00000521752		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
intron-3CDS	ENST00000527771	ENST00000523767		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
intron-3CDS	ENST00000527771	ENST00000261797		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
intron-intron	ENST00000527771	ENST00000521752		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
intron-3CDS	ENST00000531595	ENST00000523767		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
intron-3CDS	ENST00000531595	ENST00000261797		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
intron-intron	ENST00000531595	ENST00000521752		TCGA	RV	PRAD	TCGA-HC-7748-01A	ARNT2	chr15	80889603	+	NDST1	chr5	149915262	+
5UTR-3CDS	ENST00000261168	ENST00000525566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-3CDS	ENST00000261168	ENST00000429002		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000503506		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000526691		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000388854		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000354940		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000526390		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000529546		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000540716		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000524698		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000542918		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000378070		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000397736		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000427956		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000526950		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000261168	ENST00000526006		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-3CDS	ENST00000543189	ENST00000525566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-3CDS	ENST00000543189	ENST00000429002		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000503506		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000526691		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000388854		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000354940		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000526390		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000529546		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000540716		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000524698		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000542918		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000378070		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000397736		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000427956		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000526950		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000543189	ENST00000526006		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-3CDS	ENST00000536444	ENST00000525566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-3CDS	ENST00000536444	ENST00000429002		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000503506		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000526691		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000388854		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000354940		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000526390		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000529546		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000540716		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000524698		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000542918		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000378070		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000397736		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000427956		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000526950		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
5UTR-intron	ENST00000536444	ENST00000526006		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000544627	ENST00000525566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000544627	ENST00000429002		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000503506		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000526691		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000388854		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000354940		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000526390		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000529546		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000540716		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000524698		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000542918		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000378070		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000397736		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000427956		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000526950		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000544627	ENST00000526006		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000541654	ENST00000525566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000541654	ENST00000429002		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000503506		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000526691		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000388854		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000354940		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000526390		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000529546		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000540716		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000524698		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000542918		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000378070		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000397736		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000427956		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000526950		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000541654	ENST00000526006		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000540793	ENST00000525566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000540793	ENST00000429002		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000503506		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526691		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000388854		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000354940		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526390		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000529546		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000540716		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000524698		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000542918		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000378070		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000397736		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000427956		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526950		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526006		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14518761	+	TXNRD1	chr12	104645305	+
In-frame	ENST00000278616	ENST00000530950		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000278616	ENST00000526823		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000278616	ENST00000532895		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
In-frame	ENST00000452508	ENST00000530950		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000452508	ENST00000526823		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
5CDS-5UTR	ENST00000452508	ENST00000532895		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
3UTR-3CDS	ENST00000525178	ENST00000530950		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
3UTR-5UTR	ENST00000525178	ENST00000526823		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
3UTR-5UTR	ENST00000525178	ENST00000532895		TCGA	RV	PRAD	TCGA-KK-A6E8-01A	ATM	chr11	108218092	+	CARD18	chr11	105009805	-
Frame-shit	ENST00000389153	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000389153	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000389153	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000389153	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-5UTR	ENST00000389153	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
Frame-shit	ENST00000608853	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000608853	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000608853	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000608853	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-5UTR	ENST00000608853	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
Frame-shit	ENST00000377617	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000377617	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000377617	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000377617	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-5UTR	ENST00000377617	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
In-frame	ENST00000550104	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000550104	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000550104	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000550104	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-5UTR	ENST00000550104	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
Frame-shit	ENST00000542287	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000542287	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000542287	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000542287	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-5UTR	ENST00000542287	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
Frame-shit	ENST00000535949	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000535949	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000535949	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-intron	ENST00000535949	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
5CDS-5UTR	ENST00000535949	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
intron-3CDS	ENST00000549455	ENST00000260408		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
intron-intron	ENST00000549455	ENST00000402627		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
intron-intron	ENST00000549455	ENST00000561288		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
intron-intron	ENST00000549455	ENST00000396140		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
intron-5UTR	ENST00000549455	ENST00000558733		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	ATXN2	chr12	111947353	-	ADAM10	chr15	58974513	-
In-frame	ENST00000548411	ENST00000539107		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000548411	ENST00000545336		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000548411	ENST00000381256		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000548411	ENST00000381259		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000548411	ENST00000540401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000548411	ENST00000306172		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000281474	ENST00000539107		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000281474	ENST00000545336		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000281474	ENST00000381256		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000281474	ENST00000381259		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000281474	ENST00000540401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000281474	ENST00000306172		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
Frame-shit	ENST00000551848	ENST00000539107		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
Frame-shit	ENST00000551848	ENST00000545336		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
Frame-shit	ENST00000551848	ENST00000381256		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
Frame-shit	ENST00000551848	ENST00000381259		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000551848	ENST00000540401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000551848	ENST00000306172		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000550207	ENST00000539107		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000550207	ENST00000545336		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000550207	ENST00000381256		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000550207	ENST00000381259		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000550207	ENST00000540401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000550207	ENST00000306172		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000551086	ENST00000539107		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000551086	ENST00000545336		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000551086	ENST00000381256		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
In-frame	ENST00000551086	ENST00000381259		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000551086	ENST00000540401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000551086	ENST00000306172		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	BICD1	chr12	32260478	+	CCDC91	chr12	28603094	+
5UTR-3CDS	ENST00000515059	ENST00000450793		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-3CDS	ENST00000515059	ENST00000538141		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-3CDS	ENST00000515059	ENST00000380180		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-3CDS	ENST00000515059	ENST00000318007		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-3CDS	ENST00000515059	ENST00000437932		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-3CDS	ENST00000515059	ENST00000317968		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000542407		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000508216		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000514743		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000380176		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000359265		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000512274		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
5UTR-intron	ENST00000515059	ENST00000504489		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000440890	ENST00000450793		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000440890	ENST00000538141		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000440890	ENST00000380180		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000440890	ENST00000318007		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000440890	ENST00000437932		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000440890	ENST00000317968		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000542407		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000508216		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000514743		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000380176		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000359265		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000512274		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000440890	ENST00000504489		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000264568	ENST00000450793		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000264568	ENST00000538141		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000264568	ENST00000380180		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000264568	ENST00000318007		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000264568	ENST00000437932		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000264568	ENST00000317968		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000542407		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000508216		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000514743		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000380176		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000359265		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000512274		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000264568	ENST00000504489		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000394931	ENST00000450793		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000394931	ENST00000538141		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000394931	ENST00000380180		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000394931	ENST00000318007		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000394931	ENST00000437932		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000394931	ENST00000317968		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000542407		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000508216		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000514743		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000380176		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000359265		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000512274		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000394931	ENST00000504489		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000502683	ENST00000450793		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000502683	ENST00000538141		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000502683	ENST00000380180		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000502683	ENST00000318007		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000502683	ENST00000437932		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-3CDS	ENST00000502683	ENST00000317968		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000542407		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000508216		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000514743		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000380176		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000359265		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000512274		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
intron-intron	ENST00000502683	ENST00000504489		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95444875	+
Frame-shit	ENST00000357654	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000357654	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000357654	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000357654	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000357654	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000357654	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000351666	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000351666	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000351666	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000351666	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000351666	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000351666	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000309486	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000309486	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000309486	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000309486	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000309486	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000309486	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000346315	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000346315	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000346315	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000346315	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000346315	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000346315	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000354071	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000354071	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000354071	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000354071	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000354071	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000354071	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000352993	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000352993	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000352993	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000352993	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000352993	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000352993	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000468300	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000468300	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000468300	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000468300	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000468300	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000468300	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
In-frame	ENST00000591534	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
In-frame	ENST00000591534	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000591534	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000591534	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000591534	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000591534	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000591849	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000591849	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000591849	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000591849	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000591849	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000591849	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000586385	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000586385	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000586385	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000586385	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000586385	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000586385	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000493795	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000493795	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000493795	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000493795	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000493795	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000493795	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000471181	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000471181	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000471181	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000471181	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000471181	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000471181	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000491747	ENST00000356175		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000491747	ENST00000358273		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000491747	ENST00000431387		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-3UTR	ENST00000491747	ENST00000581113		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000491747	ENST00000417592		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
5CDS-intron	ENST00000491747	ENST00000444181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	BRCA1	chr17	41199660	-	NF1	chr17	29654517	+
Frame-shit	ENST00000276704	ENST00000287394		TCGA	RV	PRAD	TCGA-HC-7233-01A	C8orf76	chr8	124253470	-	ATAD2	chr8	124361684	-
5CDS-intron	ENST00000276704	ENST00000521903		TCGA	RV	PRAD	TCGA-HC-7233-01A	C8orf76	chr8	124253470	-	ATAD2	chr8	124361684	-
5CDS-intron	ENST00000276704	ENST00000534257		TCGA	RV	PRAD	TCGA-HC-7233-01A	C8orf76	chr8	124253470	-	ATAD2	chr8	124361684	-
5UTR-3CDS	ENST00000521310	ENST00000287394		TCGA	RV	PRAD	TCGA-HC-7233-01A	C8orf76	chr8	124253470	-	ATAD2	chr8	124361684	-
5UTR-intron	ENST00000521310	ENST00000521903		TCGA	RV	PRAD	TCGA-HC-7233-01A	C8orf76	chr8	124253470	-	ATAD2	chr8	124361684	-
5UTR-intron	ENST00000521310	ENST00000534257		TCGA	RV	PRAD	TCGA-HC-7233-01A	C8orf76	chr8	124253470	-	ATAD2	chr8	124361684	-
5CDS-5UTR	ENST00000335762	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000335762	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000335762	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000335762	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000335762	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000335762	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000335762	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399655	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399655	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399655	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399655	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399655	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399655	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399655	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000480911	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000480911	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000480911	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000480911	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000480911	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000480911	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000480911	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399644	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399644	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399644	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399644	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399644	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399644	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399644	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000344100	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000344100	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000344100	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000344100	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000344100	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000344100	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000344100	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399638	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399638	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399638	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399638	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399638	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399638	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399638	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399629	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399629	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399629	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399629	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399629	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399629	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399629	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399597	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399597	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399597	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399597	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399597	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399597	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399597	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000327702	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000327702	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000327702	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000327702	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000327702	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000327702	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000327702	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399621	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399621	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399621	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399621	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399621	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399621	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399621	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399649	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399649	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399649	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399649	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399649	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399649	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399649	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399637	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399637	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399637	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399637	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399637	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399637	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399637	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000402845	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000402845	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000402845	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000402845	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000402845	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000402845	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000402845	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399591	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399591	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399591	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399591	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399591	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399591	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399591	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399641	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399641	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399641	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399641	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399641	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399641	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399641	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000347598	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000347598	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000347598	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000347598	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000347598	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000347598	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000347598	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399606	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399606	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399606	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399606	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399606	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399606	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399606	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399595	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399595	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399595	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399595	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399595	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399595	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399595	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399601	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399601	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399601	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399601	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399601	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399601	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399601	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399603	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399603	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399603	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399603	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399603	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399603	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399603	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399634	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399634	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399634	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399634	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399634	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399634	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399634	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399617	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399617	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399617	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000399617	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399617	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399617	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000399617	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000406454	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000406454	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000406454	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000406454	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000406454	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000406454	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-intron	ENST00000406454	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-5UTR	ENST00000491104	ENST00000359154		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-5UTR	ENST00000491104	ENST00000448661		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-5UTR	ENST00000491104	ENST00000569174		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-5UTR	ENST00000491104	ENST00000356003		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-intron	ENST00000491104	ENST00000544162		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-intron	ENST00000491104	ENST00000542271		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
intron-intron	ENST00000491104	ENST00000568684		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	CACNA1C	chr12	2229596	+	WWP2	chr16	69820899	+
5CDS-5UTR	ENST00000327064	ENST00000427043		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	CARM1	chr19	11027173	+	CASP14	chr19	15163017	+
5CDS-5UTR	ENST00000327064	ENST00000221740		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	CARM1	chr19	11027173	+	CASP14	chr19	15163017	+
5CDS-5UTR	ENST00000344150	ENST00000427043		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	CARM1	chr19	11027173	+	CASP14	chr19	15163017	+
5CDS-5UTR	ENST00000344150	ENST00000221740		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	CARM1	chr19	11027173	+	CASP14	chr19	15163017	+
5UTR-5UTR	ENST00000444614	ENST00000379589		TCGA	RV	PRAD	TCGA-EJ-5510-01A	CCDC122	chr13	44448978	-	LHFP	chr13	40175527	-
5UTR-5UTR	ENST00000444614	ENST00000495922		TCGA	RV	PRAD	TCGA-EJ-5510-01A	CCDC122	chr13	44448978	-	LHFP	chr13	40175527	-
5UTR-5UTR	ENST00000476570	ENST00000379589		TCGA	RV	PRAD	TCGA-EJ-5510-01A	CCDC122	chr13	44448978	-	LHFP	chr13	40175527	-
5UTR-5UTR	ENST00000476570	ENST00000495922		TCGA	RV	PRAD	TCGA-EJ-5510-01A	CCDC122	chr13	44448978	-	LHFP	chr13	40175527	-
5UTR-5UTR	ENST00000281508	ENST00000379589		TCGA	RV	PRAD	TCGA-EJ-5510-01A	CCDC122	chr13	44448978	-	LHFP	chr13	40175527	-
5UTR-5UTR	ENST00000281508	ENST00000495922		TCGA	RV	PRAD	TCGA-EJ-5510-01A	CCDC122	chr13	44448978	-	LHFP	chr13	40175527	-
Frame-shit	ENST00000542213	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
intron-3CDS	ENST00000370125	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000361544	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000370124	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000336454	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000544534	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
intron-3CDS	ENST00000469387	ENST00000382208		TCGA	RV	PRAD	TCGA-V1-A9OH-01A	CDC14A	chr1	100921048	+	DEFB135	chr8	11841930	+
Frame-shit	ENST00000430627	ENST00000394287		TCGA	RV	PRAD	TCGA-EJ-5525-01A	CDK12	chr17	37619370	+	MED1	chr17	37571592	-
Frame-shit	ENST00000430627	ENST00000300651		TCGA	RV	PRAD	TCGA-EJ-5525-01A	CDK12	chr17	37619370	+	MED1	chr17	37571592	-
Frame-shit	ENST00000447079	ENST00000394287		TCGA	RV	PRAD	TCGA-EJ-5525-01A	CDK12	chr17	37619370	+	MED1	chr17	37571592	-
Frame-shit	ENST00000447079	ENST00000300651		TCGA	RV	PRAD	TCGA-EJ-5525-01A	CDK12	chr17	37619370	+	MED1	chr17	37571592	-
intron-3CDS	ENST00000559545	ENST00000394287		TCGA	RV	PRAD	TCGA-EJ-5525-01A	CDK12	chr17	37619370	+	MED1	chr17	37571592	-
intron-3CDS	ENST00000559545	ENST00000300651		TCGA	RV	PRAD	TCGA-EJ-5525-01A	CDK12	chr17	37619370	+	MED1	chr17	37571592	-
5CDS-3UTR	ENST00000458535	ENST00000453168		TCGA	RV	PRAD	TCGA-CH-5751-01A	CMTM8	chr3	32280611	+	STT3B	chr3	31638290	+
5CDS-3UTR	ENST00000458535	ENST00000295770		TCGA	RV	PRAD	TCGA-CH-5751-01A	CMTM8	chr3	32280611	+	STT3B	chr3	31638290	+
5CDS-3UTR	ENST00000307526	ENST00000453168		TCGA	RV	PRAD	TCGA-CH-5751-01A	CMTM8	chr3	32280611	+	STT3B	chr3	31638290	+
5CDS-3UTR	ENST00000307526	ENST00000295770		TCGA	RV	PRAD	TCGA-CH-5751-01A	CMTM8	chr3	32280611	+	STT3B	chr3	31638290	+
5CDS-intron	ENST00000416691	ENST00000474320		TCGA	RV	PRAD	TCGA-HC-8260-01A	COG6	chr13	40298698	+	DNAJC15	chr13	43659904	+
5CDS-intron	ENST00000416691	ENST00000379221		TCGA	RV	PRAD	TCGA-HC-8260-01A	COG6	chr13	40298698	+	DNAJC15	chr13	43659904	+
5CDS-intron	ENST00000455146	ENST00000474320		TCGA	RV	PRAD	TCGA-HC-8260-01A	COG6	chr13	40298698	+	DNAJC15	chr13	43659904	+
5CDS-intron	ENST00000455146	ENST00000379221		TCGA	RV	PRAD	TCGA-HC-8260-01A	COG6	chr13	40298698	+	DNAJC15	chr13	43659904	+
intron-intron	ENST00000465775	ENST00000474320		TCGA	RV	PRAD	TCGA-HC-8260-01A	COG6	chr13	40298698	+	DNAJC15	chr13	43659904	+
intron-intron	ENST00000465775	ENST00000379221		TCGA	RV	PRAD	TCGA-HC-8260-01A	COG6	chr13	40298698	+	DNAJC15	chr13	43659904	+
In-frame	ENST00000442003	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000442003	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000442003	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000442003	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000442003	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000442003	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000538197	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000538197	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000538197	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000538197	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000538197	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000538197	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000541112	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000541112	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000541112	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000541112	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000541112	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000541112	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000507071	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000507071	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000507071	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000507071	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000507071	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000507071	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000345451	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000345451	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000345451	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000345451	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000345451	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000345451	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000259997	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000259997	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000259997	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000259997	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000259997	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000259997	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382401	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382401	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382401	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382401	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382401	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000382401	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382395	ENST00000515064		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382395	ENST00000441778		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382395	ENST00000304523		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382395	ENST00000502640		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000382395	ENST00000503178		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
5CDS-intron	ENST00000382395	ENST00000503829		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	CPEB2	chr4	15009210	+	LDB2	chr4	16513727	-
In-frame	ENST00000392975	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000392975	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000392975	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000392975	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
Frame-shit	ENST00000360793	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000360793	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000360793	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000360793	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
In-frame	ENST00000584031	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000584031	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000584031	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000584031	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
Frame-shit	ENST00000392976	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000392976	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000392976	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
5CDS-intron	ENST00000392976	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000582297	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582297	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582297	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582297	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000581573	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000581573	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000581573	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000581573	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000448884	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000448884	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000448884	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000448884	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000582034	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582034	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582034	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582034	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000542042	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000542042	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000542042	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000542042	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000581163	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000581163	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000581163	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000581163	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-3CDS	ENST00000582997	ENST00000216037		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582997	ENST00000403532		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582997	ENST00000405219		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
intron-intron	ENST00000582997	ENST00000344347		TCGA	RV	PRAD	TCGA-HC-7210-01A	CYB561	chr17	61509668	-	XBP1	chr22	29196585	-
Frame-shit	ENST00000341516	ENST00000318217		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000341516	ENST00000394649		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000341516	ENST00000579584		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000341516	ENST00000584232		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000341516	ENST00000583621		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000554215	ENST00000318217		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000554215	ENST00000394649		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000554215	ENST00000579584		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000554215	ENST00000584232		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000554215	ENST00000583621		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000556847	ENST00000318217		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000556847	ENST00000394649		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000556847	ENST00000579584		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000556847	ENST00000584232		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000556847	ENST00000583621		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000557386	ENST00000318217		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000557386	ENST00000394649		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000557386	ENST00000579584		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000557386	ENST00000584232		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000557386	ENST00000583621		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
Frame-shit	ENST00000389997	ENST00000318217		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000389997	ENST00000394649		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000389997	ENST00000579584		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000389997	ENST00000584232		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-intron	ENST00000389997	ENST00000583621		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5UTR-3CDS	ENST00000553293	ENST00000318217		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5UTR-5UTR	ENST00000553293	ENST00000394649		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5UTR-5UTR	ENST00000553293	ENST00000579584		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5UTR-intron	ENST00000553293	ENST00000584232		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5UTR-intron	ENST00000553293	ENST00000583621		TCGA	RV	PRAD	TCGA-G9-6494-01A	DCAF5	chr14	69558391	-	MYO1D	chr17	31107802	-
5CDS-5UTR	ENST00000341516	ENST00000544172		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000341516	ENST00000397501		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000341516	ENST00000338238		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000341516	ENST00000346049		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000341516	ENST00000420218		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000341516	ENST00000517339		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-3UTR	ENST00000341516	ENST00000519650		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000341516	ENST00000397497		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000554215	ENST00000544172		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000554215	ENST00000397501		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000554215	ENST00000338238		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000554215	ENST00000346049		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000554215	ENST00000420218		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000554215	ENST00000517339		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-3UTR	ENST00000554215	ENST00000519650		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000554215	ENST00000397497		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000556847	ENST00000544172		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000556847	ENST00000397501		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000556847	ENST00000338238		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000556847	ENST00000346049		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000556847	ENST00000420218		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000556847	ENST00000517339		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-3UTR	ENST00000556847	ENST00000519650		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000556847	ENST00000397497		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000557386	ENST00000544172		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000557386	ENST00000397501		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000557386	ENST00000338238		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000557386	ENST00000346049		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000557386	ENST00000420218		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000557386	ENST00000517339		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-3UTR	ENST00000557386	ENST00000519650		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000557386	ENST00000397497		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000389997	ENST00000544172		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000389997	ENST00000397501		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-5UTR	ENST00000389997	ENST00000338238		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000389997	ENST00000346049		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000389997	ENST00000420218		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000389997	ENST00000517339		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-3UTR	ENST00000389997	ENST00000519650		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000389997	ENST00000397497		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000553293	ENST00000544172		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000553293	ENST00000397501		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-5UTR	ENST00000553293	ENST00000338238		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000553293	ENST00000346049		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000553293	ENST00000420218		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000553293	ENST00000517339		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-3UTR	ENST00000553293	ENST00000519650		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
intron-intron	ENST00000553293	ENST00000397497		TCGA	RV	PRAD	TCGA-HC-7818-01A	DCAF5	chr14	69619482	-	PTK2B	chr8	27169821	+
5CDS-intron	ENST00000396821	ENST00000371917		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000396821	ENST00000493140		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000444597	ENST00000371917		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000444597	ENST00000493140		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000381633	ENST00000371917		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000381633	ENST00000493140		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000432525	ENST00000371917		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000432525	ENST00000493140		TCGA	RV	PRAD	TCGA-EJ-7782-01A	DDX17	chr22	38879445	-	ARFGEF2	chr20	47615777	+
5CDS-3UTR	ENST00000352940	ENST00000540224		TCGA	RV	PRAD	TCGA-CH-5792-01A	DDX47	chr12	12967158	+	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000352940	ENST00000228865		TCGA	RV	PRAD	TCGA-CH-5792-01A	DDX47	chr12	12967158	+	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000358007	ENST00000540224		TCGA	RV	PRAD	TCGA-CH-5792-01A	DDX47	chr12	12967158	+	CREBL2	chr12	12788711	+
5CDS-3UTR	ENST00000358007	ENST00000228865		TCGA	RV	PRAD	TCGA-CH-5792-01A	DDX47	chr12	12967158	+	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000392155	ENST00000540224		TCGA	RV	PRAD	TCGA-CH-5792-01A	DDX47	chr12	12967158	+	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000392155	ENST00000228865		TCGA	RV	PRAD	TCGA-CH-5792-01A	DDX47	chr12	12967158	+	CREBL2	chr12	12788711	+
Frame-shit	ENST00000367549	ENST00000266087		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
5CDS-intron	ENST00000367549	ENST00000382058		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
5CDS-5UTR	ENST00000367549	ENST00000397426		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
5CDS-3UTR	ENST00000367549	ENST00000465418		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
intron-3CDS	ENST00000485081	ENST00000266087		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
intron-intron	ENST00000485081	ENST00000382058		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
intron-5UTR	ENST00000485081	ENST00000397426		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
intron-3UTR	ENST00000485081	ENST00000465418		TCGA	RV	PRAD	TCGA-HC-A631-01A	DHX9	chr1	182836178	+	FBXO7	chr22	32874968	+
5CDS-5UTR	ENST00000355827	ENST00000333104		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-intron	ENST00000355827	ENST00000355220		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-5UTR	ENST00000373054	ENST00000333104		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-intron	ENST00000373054	ENST00000355220		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-5UTR	ENST00000373061	ENST00000333104		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-intron	ENST00000373061	ENST00000355220		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-5UTR	ENST00000373049	ENST00000333104		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-intron	ENST00000373049	ENST00000355220		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-5UTR	ENST00000324765	ENST00000333104		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
5CDS-intron	ENST00000324765	ENST00000355220		TCGA	RV	PRAD	TCGA-V1-A9Z7-01A	DIAPH2	chrX	95993761	+	MAGEA11	chrX	148770498	+
Frame-shit	ENST00000280886	ENST00000368594		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
Frame-shit	ENST00000280886	ENST00000368593		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
5CDS-3UTR	ENST00000280886	ENST00000487614		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
intron-3CDS	ENST00000381496	ENST00000368594		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
intron-3CDS	ENST00000381496	ENST00000368593		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
intron-3UTR	ENST00000381496	ENST00000487614		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
intron-3CDS	ENST00000540204	ENST00000368594		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
intron-3CDS	ENST00000540204	ENST00000368593		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
intron-3UTR	ENST00000540204	ENST00000487614		TCGA	RV	PRAD	TCGA-HC-A48F-01A	DIP2C	chr10	735434	-	INPP5A	chr10	134540325	+
Frame-shit	ENST00000457167	ENST00000227918		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
5CDS-intron	ENST00000457167	ENST00000525380		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
In-frame	ENST00000426588	ENST00000227918		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
5CDS-intron	ENST00000426588	ENST00000525380		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
Frame-shit	ENST00000316603	ENST00000227918		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
5CDS-intron	ENST00000316603	ENST00000525380		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
intron-3CDS	ENST00000589547	ENST00000227918		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
intron-intron	ENST00000589547	ENST00000525380		TCGA	RV	PRAD	TCGA-EJ-7325-01B	DNAJC7	chr17	40142282	-	SCGB2A2	chr11	62040429	+
5CDS-5UTR	ENST00000442713	ENST00000441508		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000442713	ENST00000398786		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000269445	ENST00000441508		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
5CDS-5UTR	ENST00000269445	ENST00000398786		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
intron-5UTR	ENST00000584977	ENST00000441508		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
intron-5UTR	ENST00000584977	ENST00000398786		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
intron-5UTR	ENST00000578396	ENST00000441508		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
intron-5UTR	ENST00000578396	ENST00000398786		TCGA	RV	PRAD	TCGA-EJ-5521-01A	DYM	chr18	46623772	-	C10orf105	chr10	73476099	-
In-frame	ENST00000344710	ENST00000248984		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000344710	ENST00000543051		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
5CDS-5UTR	ENST00000344710	ENST00000486651		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000397525	ENST00000248984		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000397525	ENST00000543051		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
5CDS-5UTR	ENST00000397525	ENST00000486651		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000330125	ENST00000248984		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000330125	ENST00000543051		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
5CDS-5UTR	ENST00000330125	ENST00000486651		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000397523	ENST00000248984		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
In-frame	ENST00000397523	ENST00000543051		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
5CDS-5UTR	ENST00000397523	ENST00000486651		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
intron-3CDS	ENST00000382180	ENST00000248984		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
intron-3CDS	ENST00000382180	ENST00000543051		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
intron-5UTR	ENST00000382180	ENST00000486651		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
intron-3CDS	ENST00000441289	ENST00000248984		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
intron-3CDS	ENST00000441289	ENST00000543051		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
intron-5UTR	ENST00000441289	ENST00000486651		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	EIF4ENIF1	chr22	31867830	-	C22orf24	chr22	32330435	-
Frame-shit	ENST00000503581	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
Frame-shit	ENST00000503581	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
5CDS-intron	ENST00000503581	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
Frame-shit	ENST00000370621	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
Frame-shit	ENST00000370621	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
5CDS-intron	ENST00000370621	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
Frame-shit	ENST00000370616	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
Frame-shit	ENST00000370616	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
5CDS-intron	ENST00000370616	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000393380	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000393380	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-intron	ENST00000393380	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000342421	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000342421	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-intron	ENST00000342421	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000370618	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000370618	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-intron	ENST00000370618	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000486069	ENST00000370598		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000486069	ENST00000238918		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-intron	ENST00000486069	ENST00000546190		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	EYS	chr6	66005756	-	BAI3	chr6	70034764	+
intron-3CDS	ENST00000311172	ENST00000334126		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-3CDS	ENST00000311172	ENST00000313663		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-intron	ENST00000311172	ENST00000542452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-intron	ENST00000311172	ENST00000539061		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
Frame-shit	ENST00000409314	ENST00000334126		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
Frame-shit	ENST00000409314	ENST00000313663		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5CDS-intron	ENST00000409314	ENST00000542452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5CDS-intron	ENST00000409314	ENST00000539061		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
Frame-shit	ENST00000409418	ENST00000334126		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
Frame-shit	ENST00000409418	ENST00000313663		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5CDS-intron	ENST00000409418	ENST00000542452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5CDS-intron	ENST00000409418	ENST00000539061		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-3CDS	ENST00000458644	ENST00000334126		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-3CDS	ENST00000458644	ENST00000313663		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-intron	ENST00000458644	ENST00000542452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-intron	ENST00000458644	ENST00000539061		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-3CDS	ENST00000409853	ENST00000334126		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-3CDS	ENST00000409853	ENST00000313663		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-intron	ENST00000409853	ENST00000542452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
5UTR-intron	ENST00000409853	ENST00000539061		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-3CDS	ENST00000409263	ENST00000334126		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-3CDS	ENST00000409263	ENST00000313663		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-intron	ENST00000409263	ENST00000542452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
intron-intron	ENST00000409263	ENST00000539061		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FCHSD2	chr11	72851076	-	C2CD3	chr11	73850873	-
In-frame	ENST00000447866	ENST00000361565		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
5CDS-intron	ENST00000447866	ENST00000464348		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
In-frame	ENST00000368356	ENST00000361565		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
5CDS-intron	ENST00000368356	ENST00000464348		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
3UTR-3CDS	ENST00000487002	ENST00000361565		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
3UTR-intron	ENST00000487002	ENST00000464348		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
In-frame	ENST00000356657	ENST00000361565		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
5CDS-intron	ENST00000356657	ENST00000464348		TCGA	RV	PRAD	TCGA-J4-A67Q-01A	FDPS	chr1	155282186	+	IPO9	chr1	201840289	+
Frame-shit	ENST00000415807	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000415807	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
Frame-shit	ENST00000336824	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000336824	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
Frame-shit	ENST00000416957	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000416957	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
Frame-shit	ENST00000392699	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000392699	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
Frame-shit	ENST00000421757	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000421757	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
Frame-shit	ENST00000423424	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000423424	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
intron-3CDS	ENST00000476794	ENST00000334567		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
intron-intron	ENST00000476794	ENST00000469981		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FNDC3B	chr3	171851336	+	TMEM212	chr3	171569772	+
5CDS-intron	ENST00000264433	ENST00000500890		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000264433	ENST00000507827		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
5CDS-intron	ENST00000264433	ENST00000336356		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
intron-intron	ENST00000379346	ENST00000500890		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
intron-intron	ENST00000379346	ENST00000507827		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
intron-intron	ENST00000379346	ENST00000336356		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
intron-intron	ENST00000505445	ENST00000500890		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
intron-intron	ENST00000505445	ENST00000507827		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
intron-intron	ENST00000505445	ENST00000336356		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FNIP2	chr4	159690471	+	LRAT	chr4	155649855	+
5CDS-5UTR	ENST00000318789	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000318789	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000318789	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000475937	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000475937	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000475937	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000493089	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000493089	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000493089	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000484350	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000484350	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000484350	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000318779	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000318779	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000318779	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
intron-5UTR	ENST00000491238	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
intron-5UTR	ENST00000491238	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
intron-5UTR	ENST00000491238	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000498215	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000498215	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000498215	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000468577	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000468577	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5CDS-5UTR	ENST00000468577	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
intron-5UTR	ENST00000472382	ENST00000438284		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
intron-5UTR	ENST00000472382	ENST00000431010		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
intron-5UTR	ENST00000472382	ENST00000397056		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	FOXP1	chr3	71247353	-	HRH1	chr3	11300689	+
5UTR-3CDS	ENST00000380877	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000380877	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000380877	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000220429	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000220429	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000220429	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000543881	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000543881	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000543881	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000429662	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000429662	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000429662	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000396464	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000396464	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000396464	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000359031	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000359031	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000359031	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000560825	ENST00000305560		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-3CDS	ENST00000560825	ENST00000559860		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
5UTR-intron	ENST00000560825	ENST00000533841		TCGA	RV	PRAD	TCGA-CH-5761-01A	GABPB1	chr15	50647182	-	SPATA5L1	chr15	45697518	+
Frame-shit	ENST00000530927	ENST00000589222		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000407086		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000390652		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000408905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000588462		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000585744		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000588874		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000530927	ENST00000585812		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
Frame-shit	ENST00000380815	ENST00000589222		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000407086		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000390652		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000408905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000588462		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000585744		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000588874		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000380815	ENST00000585812		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
Frame-shit	ENST00000467288	ENST00000589222		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000407086		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000390652		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000408905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000588462		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000585744		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000588874		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000467288	ENST00000585812		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	GMDS	chr6	1624041	-	BCAS3	chr17	59465980	+
5UTR-5UTR	ENST00000370982	ENST00000370981		TCGA	RV	PRAD	TCGA-EJ-A8FP-01A	GNG12	chr1	68243141	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000370982	ENST00000395201		TCGA	RV	PRAD	TCGA-EJ-A8FP-01A	GNG12	chr1	68243141	-	DIRAS3	chr1	68513045	-
intron-5UTR	ENST00000494936	ENST00000370981		TCGA	RV	PRAD	TCGA-EJ-A8FP-01A	GNG12	chr1	68243141	-	DIRAS3	chr1	68513045	-
intron-5UTR	ENST00000494936	ENST00000395201		TCGA	RV	PRAD	TCGA-EJ-A8FP-01A	GNG12	chr1	68243141	-	DIRAS3	chr1	68513045	-
Frame-shit	ENST00000377047	ENST00000377067		TCGA	RV	PRAD	TCGA-HC-A76W-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	PRAD	TCGA-HC-A76W-01A	GPC6	chr13	93879869	+	GPC5	chr13	93518535	+
5CDS-5UTR	ENST00000409843	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409843	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409843	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409830	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409830	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409830	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000410051	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000410051	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000410051	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
3UTR-5UTR	ENST00000479019	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
3UTR-5UTR	ENST00000479019	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
3UTR-5UTR	ENST00000479019	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409805	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409805	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409805	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000359135	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000359135	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000359135	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409580	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409580	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409580	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409637	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409637	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409637	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409609	ENST00000233826		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409609	ENST00000409779		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-5UTR	ENST00000409609	ENST00000410029		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	GULP1	chr2	189348219	+	KCNJ13	chr2	233636088	-
5CDS-intron	ENST00000377403	ENST00000263045		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000377403	ENST00000393666		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000377403	ENST00000433368		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000377403	ENST00000423399		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000377403	ENST00000371159		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
intron-intron	ENST00000602477	ENST00000263045		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
intron-intron	ENST00000602477	ENST00000393666		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
intron-intron	ENST00000602477	ENST00000433368		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
intron-intron	ENST00000602477	ENST00000423399		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
intron-intron	ENST00000602477	ENST00000371159		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000495451	ENST00000263045		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000495451	ENST00000393666		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000495451	ENST00000433368		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000495451	ENST00000423399		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
5CDS-intron	ENST00000495451	ENST00000371159		TCGA	RV	PRAD	TCGA-EJ-7784-01A	H6PD	chr1	9331396	+	CRISP3	chr6	49712150	-
In-frame	ENST00000541565	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000541565	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000413764	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000413764	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000391905	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000391905	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000537898	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000537898	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000545154	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000545154	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000545781	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000545781	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000308852	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000308852	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000261458	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000261458	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
In-frame	ENST00000367010	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
5CDS-intron	ENST00000367010	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
intron-3CDS	ENST00000367009	ENST00000302418		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
intron-intron	ENST00000367009	ENST00000493889		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HHAT	chr1	210591669	+	KIF5B	chr10	32329385	-
Frame-shit	ENST00000406875	ENST00000544440		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000406875	ENST00000407578		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000406875	ENST00000357337		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-5UTR	ENST00000406875	ENST00000360084		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-intron	ENST00000406875	ENST00000482517		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000428878	ENST00000544440		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000428878	ENST00000407578		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000428878	ENST00000357337		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-5UTR	ENST00000428878	ENST00000360084		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-intron	ENST00000428878	ENST00000482517		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000342645	ENST00000544440		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000342645	ENST00000407578		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
Frame-shit	ENST00000342645	ENST00000357337		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-5UTR	ENST00000342645	ENST00000360084		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-intron	ENST00000342645	ENST00000482517		TCGA	RV	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77739526	-
5CDS-intron	ENST00000383329	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000383329	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000383329	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000383329	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000383329	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000383329	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000383329	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
5CDS-intron	ENST00000376228	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000423509	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000430940	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422726	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000424832	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458192	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000422921	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000456487	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000420206	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495725	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419135	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000433153	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000429840	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000457903	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000479546	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400395	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383323	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000434884	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400394	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000494871	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000453809	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000414249	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000419590	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000438171	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000552865	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000495898	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383483	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000383487	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000458668	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000257261		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000522056		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000278840		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000521849		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000574708		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000522639		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
intron-intron	ENST00000400341	ENST00000517839		TCGA	RV	PRAD	TCGA-CH-5761-01A	HLA-C	chr6	31236526	-	FADS2	chr11	61588853	+
In-frame	ENST00000371666	ENST00000276204		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
In-frame	ENST00000371666	ENST00000276202		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
In-frame	ENST00000371642	ENST00000276204		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
In-frame	ENST00000371642	ENST00000276202		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
intron-3CDS	ENST00000481868	ENST00000276204		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
intron-3CDS	ENST00000481868	ENST00000276202		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
intron-3CDS	ENST00000371637	ENST00000276204		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
intron-3CDS	ENST00000371637	ENST00000276202		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	IL13RA1	chrX	117875119	+	DOCK11	chrX	117727177	+
Frame-shit	ENST00000405709	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000405709	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000405709	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
5CDS-intron	ENST00000405709	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000331762	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000331762	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000331762	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
5CDS-intron	ENST00000331762	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000452895	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000452895	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000452895	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
5CDS-intron	ENST00000452895	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000415362	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000415362	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000415362	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
5CDS-intron	ENST00000415362	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000447215	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000447215	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000447215	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
5CDS-intron	ENST00000447215	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000437687	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000437687	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000437687	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
5CDS-intron	ENST00000437687	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-3CDS	ENST00000489381	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-3CDS	ENST00000489381	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-3CDS	ENST00000489381	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-intron	ENST00000489381	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-3CDS	ENST00000450877	ENST00000428084		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-3CDS	ENST00000450877	ENST00000494651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-3CDS	ENST00000450877	ENST00000437633		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
intron-intron	ENST00000450877	ENST00000476846		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	IMMP2L	chr7	111161369	-	DOCK4	chr7	111409733	-
Frame-shit	ENST00000316485	ENST00000329654		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
Frame-shit	ENST00000316485	ENST00000371049		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
Frame-shit	ENST00000316485	ENST00000423207		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000316485	ENST00000371048		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000316485	ENST00000371045		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000316485	ENST00000480109		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
Frame-shit	ENST00000371158	ENST00000329654		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
Frame-shit	ENST00000371158	ENST00000371049		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
Frame-shit	ENST00000371158	ENST00000423207		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000371158	ENST00000371048		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000371158	ENST00000371045		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000371158	ENST00000480109		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000543708	ENST00000329654		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000543708	ENST00000371049		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000543708	ENST00000423207		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000543708	ENST00000371048		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000543708	ENST00000371045		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000543708	ENST00000480109		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000545929	ENST00000329654		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000545929	ENST00000371049		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000545929	ENST00000423207		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000545929	ENST00000371048		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000545929	ENST00000371045		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000545929	ENST00000480109		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000472512	ENST00000329654		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000472512	ENST00000371049		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000472512	ENST00000423207		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000472512	ENST00000371048		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000472512	ENST00000371045		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
intron-intron	ENST00000472512	ENST00000480109		TCGA	RV	PRAD	TCGA-HC-7077-01A	INADL	chr1	62393501	+	PDE4B	chr1	66713143	+
In-frame	ENST00000397560	ENST00000288602		TCGA	RV	PRAD	TCGA-CH-5737-01A	JHDM1D	chr7	139810895	-	BRAF	chr7	140481493	-
In-frame	ENST00000006967	ENST00000288602		TCGA	RV	PRAD	TCGA-CH-5737-01A	JHDM1D	chr7	139810895	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000271843	ENST00000260630		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
intron-intron	ENST00000271843	ENST00000494864		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
intron-intron	ENST00000271843	ENST00000407341		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
Frame-shit	ENST00000356648	ENST00000260630		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
5CDS-intron	ENST00000356648	ENST00000494864		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
5CDS-intron	ENST00000356648	ENST00000407341		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
Frame-shit	ENST00000368589	ENST00000260630		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
5CDS-intron	ENST00000368589	ENST00000494864		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
5CDS-intron	ENST00000368589	ENST00000407341		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
intron-3CDS	ENST00000471173	ENST00000260630		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
intron-intron	ENST00000471173	ENST00000494864		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
intron-intron	ENST00000471173	ENST00000407341		TCGA	RV	PRAD	TCGA-HC-7738-01A	JTB	chr1	153946988	-	CYP1B1	chr2	38303323	-
Frame-shit	ENST00000440693	ENST00000451320		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000440693	ENST00000429148		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000440693	ENST00000353617		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000440693	ENST00000405727		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000440693	ENST00000356064		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-3UTR	ENST00000440693	ENST00000511289		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
Frame-shit	ENST00000409663	ENST00000451320		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409663	ENST00000429148		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409663	ENST00000353617		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409663	ENST00000405727		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409663	ENST00000356064		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-3UTR	ENST00000409663	ENST00000511289		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
Frame-shit	ENST00000409959	ENST00000451320		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409959	ENST00000429148		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409959	ENST00000353617		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409959	ENST00000405727		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-intron	ENST00000409959	ENST00000356064		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
5CDS-3UTR	ENST00000409959	ENST00000511289		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KIAA0922	chr4	154471293	+	ARFIP1	chr4	153791905	+
Frame-shit	ENST00000344337	ENST00000357450		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	KPNA1	chr3	122215284	-	SMC1B	chr22	45804779	-
Frame-shit	ENST00000344337	ENST00000404354		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	KPNA1	chr3	122215284	-	SMC1B	chr22	45804779	-
intron-3CDS	ENST00000466923	ENST00000357450		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	KPNA1	chr3	122215284	-	SMC1B	chr22	45804779	-
intron-3CDS	ENST00000466923	ENST00000404354		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	KPNA1	chr3	122215284	-	SMC1B	chr22	45804779	-
Frame-shit	ENST00000361069	ENST00000326682		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
Frame-shit	ENST00000361069	ENST00000337331		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
5CDS-intron	ENST00000361069	ENST00000476742		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
5CDS-intron	ENST00000361069	ENST00000343113		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
5CDS-intron	ENST00000361069	ENST00000383282		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
3UTR-3CDS	ENST00000480883	ENST00000326682		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
3UTR-3CDS	ENST00000480883	ENST00000337331		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
3UTR-intron	ENST00000480883	ENST00000476742		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
3UTR-intron	ENST00000480883	ENST00000343113		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
3UTR-intron	ENST00000480883	ENST00000383282		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	LAMC3	chr9	133917122	+	NPHP3	chr3	132423215	-
intron-5UTR	ENST00000553277	ENST00000326003		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000553277	ENST00000597483		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000553277	ENST00000593997		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-intron	ENST00000553277	ENST00000595952		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-intron	ENST00000553277	ENST00000360617		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000243077	ENST00000326003		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000243077	ENST00000597483		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000243077	ENST00000593997		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000243077	ENST00000595952		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000243077	ENST00000360617		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000338962	ENST00000326003		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000338962	ENST00000597483		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000338962	ENST00000593997		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-intron	ENST00000338962	ENST00000595952		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-intron	ENST00000338962	ENST00000360617		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000554174	ENST00000326003		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000554174	ENST00000597483		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000554174	ENST00000593997		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000554174	ENST00000595952		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000554174	ENST00000360617		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000553446	ENST00000326003		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000553446	ENST00000597483		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000553446	ENST00000593997		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-intron	ENST00000553446	ENST00000595952		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
intron-intron	ENST00000553446	ENST00000360617		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	LRP1	chr12	57548153	+	KLK3	chr19	51358191	+
In-frame	ENST00000329474	ENST00000274695		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
In-frame	ENST00000329474	ENST00000378624		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
In-frame	ENST00000329474	ENST00000378610		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
5CDS-intron	ENST00000329474	ENST00000476517		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000377969	ENST00000274695		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000377969	ENST00000378624		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000377969	ENST00000378610		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-intron	ENST00000377969	ENST00000476517		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000476458	ENST00000274695		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000476458	ENST00000378624		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-3CDS	ENST00000476458	ENST00000378610		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
intron-intron	ENST00000476458	ENST00000476517		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	LRRC16A	chr6	25557078	+	CDKAL1	chr6	21198252	+
Frame-shit	ENST00000295628	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	LRRC58	chr3	120067591	-	LSAMP	chr3	115805403	-
Frame-shit	ENST00000295628	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	LRRC58	chr3	120067591	-	LSAMP	chr3	115805403	-
5CDS-intron	ENST00000295628	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	LRRC58	chr3	120067591	-	LSAMP	chr3	115805403	-
In-frame	ENST00000404816	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
In-frame	ENST00000354476	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000390003	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000418533	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000402934	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000404525	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000407925	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000272273	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000498013	ENST00000421745		TCGA	RV	PRAD	TCGA-EJ-5496-01A	LTBP1	chr2	33246273	+	BIRC6	chr2	32631567	+
intron-3CDS	ENST00000368908	ENST00000367147		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
intron-intron	ENST00000368908	ENST00000539267		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
intron-intron	ENST00000368908	ENST00000536357		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
intron-intron	ENST00000368908	ENST00000478555		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
Frame-shit	ENST00000440902	ENST00000367147		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
5CDS-intron	ENST00000440902	ENST00000539267		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
5CDS-intron	ENST00000440902	ENST00000536357		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
5CDS-intron	ENST00000440902	ENST00000478555		TCGA	RV	PRAD	TCGA-J9-A52C-01A	LYSMD1	chr1	151138223	-	MFSD4	chr1	205566908	+
In-frame	ENST00000178640	ENST00000358767		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000178640	ENST00000546225		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000178640	ENST00000335894		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000178640	ENST00000360277		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000178640	ENST00000512104		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000178640	ENST00000560790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000560591	ENST00000358767		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000560591	ENST00000546225		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000560591	ENST00000335894		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000560591	ENST00000360277		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-intron	ENST00000560591	ENST00000512104		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-intron	ENST00000560591	ENST00000560790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000395476	ENST00000358767		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000395476	ENST00000546225		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000395476	ENST00000335894		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-3CDS	ENST00000395476	ENST00000360277		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-intron	ENST00000395476	ENST00000512104		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
intron-intron	ENST00000395476	ENST00000560790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000354498	ENST00000358767		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000354498	ENST00000546225		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000354498	ENST00000335894		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000354498	ENST00000360277		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000354498	ENST00000512104		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000354498	ENST00000560790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000340972	ENST00000358767		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000340972	ENST00000546225		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000340972	ENST00000335894		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
In-frame	ENST00000340972	ENST00000360277		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000340972	ENST00000512104		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5CDS-intron	ENST00000340972	ENST00000560790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	MAP2K5	chr15	68020283	+	IQCH	chr15	67757465	+
5UTR-3CDS	ENST00000383737	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000383737	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000383737	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000383737	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395734	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395734	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000395734	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000395734	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000426837	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000426837	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000426837	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000426837	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000360240	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000360240	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000360240	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000360240	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000439356	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000439356	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-3CDS	ENST00000439356	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000439356	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000264724	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000264724	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000264724	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000264724	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000420772	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000420772	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000420772	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000420772	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000441748	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000441748	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000441748	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000441748	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000462206	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000462206	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000462206	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000462206	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000434267	ENST00000296473		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000434267	ENST00000455683		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-3CDS	ENST00000434267	ENST00000417270		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
intron-5UTR	ENST00000434267	ENST00000483022		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAP4	chr3	48130263	-	MON1A	chr3	49950792	-
5UTR-5UTR	ENST00000441493	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441493	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000441493	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441493	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000441493	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000400561	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000444520	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000444520	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000444520	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000444520	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000444520	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000414725	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000383094	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000207726	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000207726	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000207726	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000207726	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000207726	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000429452	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000429452	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-intron	ENST00000429452	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000429452	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5UTR-5UTR	ENST00000429452	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000585038	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000580469	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18507047	-	ATAD1	chr10	89574369	-
5CDS-3UTR	ENST00000571589	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000571589	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000571589	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000571589	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000571589	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000574045	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000574045	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000574045	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000574045	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000574045	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000318282	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000318282	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000318282	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000318282	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000318282	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000572567	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000572567	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000572567	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000572567	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000572567	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000341243	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000341243	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000341243	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000341243	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000341243	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
intron-3UTR	ENST00000575537	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
intron-3UTR	ENST00000575537	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
intron-3UTR	ENST00000575537	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
intron-3UTR	ENST00000575537	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
intron-3UTR	ENST00000575537	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000573051	ENST00000569789		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000573051	ENST00000343070		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000573051	ENST00000307331		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000573051	ENST00000568923		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
5CDS-3UTR	ENST00000573051	ENST00000568085		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	MKL2	chr16	14312855	+	SCNN1B	chr16	23364122	+
In-frame	ENST00000344191	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000344191	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000344191	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
In-frame	ENST00000351017	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000351017	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000351017	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
In-frame	ENST00000392108	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000392108	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000392108	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
In-frame	ENST00000392112	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000392112	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000392112	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
In-frame	ENST00000366806	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000366806	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000366806	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
In-frame	ENST00000447894	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000447894	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000447894	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
In-frame	ENST00000400822	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000400822	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
5CDS-intron	ENST00000400822	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
intron-3CDS	ENST00000507679	ENST00000272427		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
intron-intron	ENST00000507679	ENST00000490919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
intron-intron	ENST00000507679	ENST00000410104		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	MLLT4	chr6	168303066	+	EXOC6B	chr2	72802797	-
Frame-shit	ENST00000219271	ENST00000360716		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	MMP15	chr16	58077531	+	CCDC135	chr16	57759980	+
Frame-shit	ENST00000219271	ENST00000394337		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	MMP15	chr16	58077531	+	CCDC135	chr16	57759980	+
Frame-shit	ENST00000219271	ENST00000336825		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	MMP15	chr16	58077531	+	CCDC135	chr16	57759980	+
5CDS-5UTR	ENST00000416426	ENST00000541742		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000416426	ENST00000490107		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000416426	ENST00000388985		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000416426	ENST00000366517		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000416426	ENST00000403792		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000284073	ENST00000541742		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000284073	ENST00000490107		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000284073	ENST00000388985		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000284073	ENST00000366517		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000284073	ENST00000403792		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000322684	ENST00000541742		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000322684	ENST00000490107		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000322684	ENST00000388985		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000322684	ENST00000366517		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000322684	ENST00000403792		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000442934	ENST00000541742		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000442934	ENST00000490107		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000442934	ENST00000388985		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000442934	ENST00000366517		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000442934	ENST00000403792		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000579180	ENST00000541742		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000579180	ENST00000490107		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-5UTR	ENST00000579180	ENST00000388985		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000579180	ENST00000366517		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
5CDS-intron	ENST00000579180	ENST00000403792		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
3UTR-5UTR	ENST00000579505	ENST00000541742		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
3UTR-5UTR	ENST00000579505	ENST00000490107		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
3UTR-5UTR	ENST00000579505	ENST00000388985		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
3UTR-intron	ENST00000579505	ENST00000366517		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
3UTR-intron	ENST00000579505	ENST00000403792		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	MSI2	chr17	55607085	+	SMYD3	chr1	246518396	-
Frame-shit	ENST00000317173	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
5CDS-3UTR	ENST00000317173	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
Frame-shit	ENST00000441698	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
5CDS-3UTR	ENST00000441698	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
Frame-shit	ENST00000518255	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
5CDS-3UTR	ENST00000518255	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
intron-3CDS	ENST00000521209	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
intron-3UTR	ENST00000521209	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
Frame-shit	ENST00000528246	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
5CDS-3UTR	ENST00000528246	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
Frame-shit	ENST00000382490	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
5CDS-3UTR	ENST00000382490	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
intron-3CDS	ENST00000517594	ENST00000285518		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
intron-3UTR	ENST00000517594	ENST00000530716		TCGA	RV	PRAD	TCGA-HC-7080-01A	MSRA	chr8	10177499	+	AGPAT5	chr8	6612572	+
intron-3CDS	ENST00000502509	ENST00000396591		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
intron-intron	ENST00000502509	ENST00000380860		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
intron-intron	ENST00000502509	ENST00000502979		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
In-frame	ENST00000264668	ENST00000396591		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
5CDS-intron	ENST00000264668	ENST00000380860		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
5CDS-intron	ENST00000264668	ENST00000502979		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
3UTR-3CDS	ENST00000341013	ENST00000396591		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
3UTR-intron	ENST00000341013	ENST00000380860		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
3UTR-intron	ENST00000341013	ENST00000502979		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
In-frame	ENST00000440940	ENST00000396591		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
5CDS-intron	ENST00000440940	ENST00000380860		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
5CDS-intron	ENST00000440940	ENST00000502979		TCGA	RV	PRAD	TCGA-HC-8260-01A	MTRR	chr5	7878435	+	SLC30A5	chr5	68413066	+
In-frame	ENST00000544440	ENST00000294168		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MYCBP2	chr13	77900609	-	TAF6L	chr11	62549585	+
In-frame	ENST00000407578	ENST00000294168		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MYCBP2	chr13	77900609	-	TAF6L	chr11	62549585	+
In-frame	ENST00000357337	ENST00000294168		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MYCBP2	chr13	77900609	-	TAF6L	chr11	62549585	+
5UTR-3CDS	ENST00000360084	ENST00000294168		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MYCBP2	chr13	77900609	-	TAF6L	chr11	62549585	+
intron-3CDS	ENST00000482517	ENST00000294168		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MYCBP2	chr13	77900609	-	TAF6L	chr11	62549585	+
In-frame	ENST00000339514	ENST00000331683		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000339514	ENST00000374309		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000339514	ENST00000432529		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000339514	ENST00000413312		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000339514	ENST00000272898		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000339514	ENST00000447990		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000339514	ENST00000414961		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000392318	ENST00000331683		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000392318	ENST00000374309		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392318	ENST00000432529		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392318	ENST00000413312		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392318	ENST00000272898		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392318	ENST00000447990		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392318	ENST00000414961		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000304164	ENST00000331683		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000304164	ENST00000374309		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000304164	ENST00000432529		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000304164	ENST00000413312		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000304164	ENST00000272898		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000304164	ENST00000447990		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000304164	ENST00000414961		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000392316	ENST00000331683		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
In-frame	ENST00000392316	ENST00000374309		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392316	ENST00000432529		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392316	ENST00000413312		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392316	ENST00000272898		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392316	ENST00000447990		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
5CDS-intron	ENST00000392316	ENST00000414961		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-3CDS	ENST00000439065	ENST00000331683		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-3CDS	ENST00000439065	ENST00000374309		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000439065	ENST00000432529		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000439065	ENST00000413312		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000439065	ENST00000272898		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000439065	ENST00000447990		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000439065	ENST00000414961		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-3CDS	ENST00000496992	ENST00000331683		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-3CDS	ENST00000496992	ENST00000374309		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000496992	ENST00000432529		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000496992	ENST00000413312		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000496992	ENST00000272898		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000496992	ENST00000447990		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
intron-intron	ENST00000496992	ENST00000414961		TCGA	RV	PRAD	TCGA-G9-6499-01A	MYO1B	chr2	192141756	+	SPAG16	chr2	215274864	+
Frame-shit	ENST00000296543	ENST00000296575		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
In-frame	ENST00000296543	ENST00000434550		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
5CDS-3UTR	ENST00000296543	ENST00000511314		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
Frame-shit	ENST00000398947	ENST00000296575		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
In-frame	ENST00000398947	ENST00000434550		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
5CDS-3UTR	ENST00000398947	ENST00000511314		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
intron-3CDS	ENST00000480277	ENST00000296575		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
intron-3CDS	ENST00000480277	ENST00000434550		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
intron-3UTR	ENST00000480277	ENST00000511314		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
intron-3CDS	ENST00000515576	ENST00000296575		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
intron-3CDS	ENST00000515576	ENST00000434550		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
intron-3UTR	ENST00000515576	ENST00000511314		TCGA	RV	PRAD	TCGA-V1-A9OQ-01A	NAA15	chr4	140222985	+	HHIP	chr4	145580789	+
5CDS-intron	ENST00000240922	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000240922	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000240922	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000477813	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000477813	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000477813	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
intron-intron	ENST00000497525	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
intron-intron	ENST00000497525	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
intron-intron	ENST00000497525	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000497255	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000497255	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000497255	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
intron-intron	ENST00000493454	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
intron-intron	ENST00000493454	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
intron-intron	ENST00000493454	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000493900	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000493900	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000493900	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5UTR-intron	ENST00000467022	ENST00000471694		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5UTR-intron	ENST00000467022	ENST00000355354		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
5UTR-intron	ENST00000467022	ENST00000361309		TCGA	RV	PRAD	TCGA-EJ-7317-01A	NAA50	chr3	113464789	-	CD47	chr3	107799191	-
Frame-shit	ENST00000454872	ENST00000480820		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
Frame-shit	ENST00000454872	ENST00000295930		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
Frame-shit	ENST00000454872	ENST00000464171		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
Frame-shit	ENST00000454872	ENST00000312179		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
Frame-shit	ENST00000454872	ENST00000475278		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
5CDS-3UTR	ENST00000454872	ENST00000496268		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
intron-3CDS	ENST00000473253	ENST00000480820		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
intron-3CDS	ENST00000473253	ENST00000295930		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
intron-3CDS	ENST00000473253	ENST00000464171		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
intron-3CDS	ENST00000473253	ENST00000312179		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
intron-3CDS	ENST00000473253	ENST00000475278		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
intron-3UTR	ENST00000473253	ENST00000496268		TCGA	RV	PRAD	TCGA-EJ-7792-01A	NAALADL2	chr3	174577240	+	RSRC1	chr3	158015828	+
5UTR-3CDS	ENST00000402363	ENST00000262741		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-3CDS	ENST00000402363	ENST00000372006		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-3CDS	ENST00000402363	ENST00000340332		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-3CDS	ENST00000402363	ENST00000420542		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-3CDS	ENST00000402363	ENST00000354242		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-3CDS	ENST00000402363	ENST00000540385		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-3CDS	ENST00000402363	ENST00000423209		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5UTR-5UTR	ENST00000402363	ENST00000488808		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000262741		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000372006		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000340332		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000420542		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000354242		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000540385		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000537798	ENST00000423209		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5CDS-5UTR	ENST00000537798	ENST00000488808		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000262741		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000372006		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000340332		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000420542		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000354242		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000540385		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000350030	ENST00000423209		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5CDS-5UTR	ENST00000350030	ENST00000488808		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000262741		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000372006		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000340332		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000420542		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000354242		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000540385		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000372052	ENST00000423209		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5CDS-5UTR	ENST00000372052	ENST00000488808		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000262741		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000372006		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000340332		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000420542		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000354242		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000540385		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
In-frame	ENST00000351223	ENST00000423209		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5CDS-5UTR	ENST00000351223	ENST00000488808		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000262741		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000372006		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000340332		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000420542		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000354242		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000540385		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-3CDS	ENST00000530073	ENST00000423209		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
intron-5UTR	ENST00000530073	ENST00000488808		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	NASP	chr1	46049877	+	PIK3R3	chr1	46512297	-
5CDS-intron	ENST00000339362	ENST00000398840		TCGA	RV	PRAD	TCGA-ZG-A9ND-01A	NEO1	chr15	73470768	+	NR2E3	chr15	72109893	+
5CDS-intron	ENST00000261908	ENST00000398840		TCGA	RV	PRAD	TCGA-ZG-A9ND-01A	NEO1	chr15	73470768	+	NR2E3	chr15	72109893	+
5CDS-intron	ENST00000558964	ENST00000398840		TCGA	RV	PRAD	TCGA-ZG-A9ND-01A	NEO1	chr15	73470768	+	NR2E3	chr15	72109893	+
5CDS-intron	ENST00000560262	ENST00000398840		TCGA	RV	PRAD	TCGA-ZG-A9ND-01A	NEO1	chr15	73470768	+	NR2E3	chr15	72109893	+
intron-intron	ENST00000560352	ENST00000398840		TCGA	RV	PRAD	TCGA-ZG-A9ND-01A	NEO1	chr15	73470768	+	NR2E3	chr15	72109893	+
In-frame	ENST00000371191	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371191	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000407417	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000407417	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
3UTR-3CDS	ENST00000479364	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
3UTR-3CDS	ENST00000479364	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371189	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371189	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000403491	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000403491	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371187	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371187	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000485903	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000485903	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371185	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
In-frame	ENST00000371185	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
intron-3CDS	ENST00000371184	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
intron-3CDS	ENST00000371184	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
intron-3CDS	ENST00000357977	ENST00000234701		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
intron-3CDS	ENST00000357977	ENST00000394711		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	NFIA	chr1	61824946	+	CLCA1	chr1	86942131	+
Frame-shit	ENST00000269228	ENST00000319481		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000269228	ENST00000399443		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-5UTR	ENST00000269228	ENST00000357041		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000269228	ENST00000399441		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000269228	ENST00000582618		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
Frame-shit	ENST00000412552	ENST00000319481		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000412552	ENST00000399443		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-5UTR	ENST00000412552	ENST00000357041		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000412552	ENST00000399441		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
5CDS-intron	ENST00000412552	ENST00000582618		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
intron-3CDS	ENST00000540608	ENST00000319481		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
intron-intron	ENST00000540608	ENST00000399443		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
intron-5UTR	ENST00000540608	ENST00000357041		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
intron-intron	ENST00000540608	ENST00000399441		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
intron-intron	ENST00000540608	ENST00000582618		TCGA	RV	PRAD	TCGA-EJ-5524-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21883682	-
Frame-shit	ENST00000038176	ENST00000519846		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
5CDS-5UTR	ENST00000038176	ENST00000518592		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
5CDS-5UTR	ENST00000038176	ENST00000325897		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
5CDS-intron	ENST00000038176	ENST00000518858		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
Frame-shit	ENST00000427130	ENST00000519846		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
5CDS-5UTR	ENST00000427130	ENST00000518592		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
5CDS-5UTR	ENST00000427130	ENST00000325897		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
5CDS-intron	ENST00000427130	ENST00000518858		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
intron-3CDS	ENST00000519858	ENST00000519846		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
intron-5UTR	ENST00000519858	ENST00000518592		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
intron-5UTR	ENST00000519858	ENST00000325897		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
intron-intron	ENST00000519858	ENST00000518858		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	NSMAF	chr8	59506791	-	CLVS1	chr8	62370866	+
In-frame	ENST00000258229	ENST00000347703		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
In-frame	ENST00000258229	ENST00000392567		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
In-frame	ENST00000258229	ENST00000306721		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
In-frame	ENST00000258229	ENST00000410101		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
In-frame	ENST00000258229	ENST00000410019		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000344698	ENST00000347703		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000344698	ENST00000392567		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000344698	ENST00000306721		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000344698	ENST00000410101		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000344698	ENST00000410019		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000488780	ENST00000347703		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000488780	ENST00000392567		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000488780	ENST00000306721		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000488780	ENST00000410101		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000488780	ENST00000410019		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000520463	ENST00000347703		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000520463	ENST00000392567		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000520463	ENST00000306721		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000520463	ENST00000410101		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-3CDS	ENST00000520463	ENST00000410019		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
Frame-shit	ENST00000430153	ENST00000347703		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
Frame-shit	ENST00000430153	ENST00000392567		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
Frame-shit	ENST00000430153	ENST00000306721		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
Frame-shit	ENST00000430153	ENST00000410101		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
Frame-shit	ENST00000430153	ENST00000410019		TCGA	RV	PRAD	TCGA-G9-6364-01A	PCNXL2	chr1	233372591	-	CDCA7	chr2	174227954	+
intron-5UTR	ENST00000340635	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000502484	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000502484	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000502484	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000502484	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000546160	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000546160	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000546160	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000546160	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000508821		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000425382		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000438340		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000505959		TCGA	RV	PRAD	TCGA-G9-6342-01A	PDE4D	chr5	59481384	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000340635	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000360047	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000507116	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000502484	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000502484	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000502484	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
5UTR-5UTR	ENST00000502484	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000546160	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000546160	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000546160	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000546160	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000502575	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000358923	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503258	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000405755	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000317118	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000508821		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000425382		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000438340		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000503947	ENST00000505959		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60083258	-
5UTR-3CDS	ENST00000315596	ENST00000377636		TCGA	RV	PRAD	TCGA-HC-7077-01A	PDS5B	chr13	33160730	+	TBC1D4	chr13	75936743	-
5UTR-3CDS	ENST00000315596	ENST00000431480		TCGA	RV	PRAD	TCGA-HC-7077-01A	PDS5B	chr13	33160730	+	TBC1D4	chr13	75936743	-
5UTR-5UTR	ENST00000315596	ENST00000425511		TCGA	RV	PRAD	TCGA-HC-7077-01A	PDS5B	chr13	33160730	+	TBC1D4	chr13	75936743	-
5UTR-5UTR	ENST00000315596	ENST00000377625		TCGA	RV	PRAD	TCGA-HC-7077-01A	PDS5B	chr13	33160730	+	TBC1D4	chr13	75936743	-
5UTR-intron	ENST00000315596	ENST00000478591		TCGA	RV	PRAD	TCGA-HC-7077-01A	PDS5B	chr13	33160730	+	TBC1D4	chr13	75936743	-
Frame-shit	ENST00000438045	ENST00000447716		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000438045	ENST00000395243		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000438045	ENST00000453384		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000438045	ENST00000301043		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000438045	ENST00000450529		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000438045	ENST00000415040		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000438045	ENST00000395242		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000438045	ENST00000395245		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000438045	ENST00000436730		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000248633	ENST00000447716		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000248633	ENST00000395243		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000248633	ENST00000453384		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000248633	ENST00000301043		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000248633	ENST00000450529		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000248633	ENST00000415040		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000248633	ENST00000395242		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000248633	ENST00000395245		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000248633	ENST00000436730		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000428214	ENST00000447716		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000428214	ENST00000395243		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000428214	ENST00000453384		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000428214	ENST00000301043		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
Frame-shit	ENST00000428214	ENST00000450529		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000428214	ENST00000415040		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000428214	ENST00000395242		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000428214	ENST00000395245		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000428214	ENST00000436730		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-3CDS	ENST00000541751	ENST00000447716		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-3CDS	ENST00000541751	ENST00000395243		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-3CDS	ENST00000541751	ENST00000453384		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-3CDS	ENST00000541751	ENST00000301043		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-3CDS	ENST00000541751	ENST00000450529		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-intron	ENST00000541751	ENST00000415040		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-intron	ENST00000541751	ENST00000395242		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-intron	ENST00000541751	ENST00000395245		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
intron-intron	ENST00000541751	ENST00000436730		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PEX1	chr7	92157621	-	RAB34	chr17	27043076	-
5CDS-intron	ENST00000532317	ENST00000354185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	PICALM	chr11	85668731	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000526033	ENST00000354185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	PICALM	chr11	85668731	-	DDX21	chr10	70723858	+
intron-intron	ENST00000393346	ENST00000354185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	PICALM	chr11	85668731	-	DDX21	chr10	70723858	+
intron-intron	ENST00000528398	ENST00000354185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	PICALM	chr11	85668731	-	DDX21	chr10	70723858	+
intron-intron	ENST00000356360	ENST00000354185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	PICALM	chr11	85668731	-	DDX21	chr10	70723858	+
intron-intron	ENST00000528411	ENST00000354185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	PICALM	chr11	85668731	-	DDX21	chr10	70723858	+
5CDS-5UTR	ENST00000282406	ENST00000404666		TCGA	RV	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17773337	+
5CDS-5UTR	ENST00000282406	ENST00000295156		TCGA	RV	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17773337	+
5CDS-5UTR	ENST00000282406	ENST00000406397		TCGA	RV	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17773337	+
5CDS-intron	ENST00000282406	ENST00000483921		TCGA	RV	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17773337	+
In-frame	ENST00000228705	ENST00000524189		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	PPM1H	chr12	63328272	-	KIF13B	chr8	29023289	-
In-frame	ENST00000228705	ENST00000521515		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	PPM1H	chr12	63328272	-	KIF13B	chr8	29023289	-
5CDS-intron	ENST00000228705	ENST00000404075		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	PPM1H	chr12	63328272	-	KIF13B	chr8	29023289	-
intron-3CDS	ENST00000551214	ENST00000524189		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	PPM1H	chr12	63328272	-	KIF13B	chr8	29023289	-
intron-3CDS	ENST00000551214	ENST00000521515		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	PPM1H	chr12	63328272	-	KIF13B	chr8	29023289	-
intron-intron	ENST00000551214	ENST00000404075		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	PPM1H	chr12	63328272	-	KIF13B	chr8	29023289	-
Frame-shit	ENST00000512215	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5CDS-intron	ENST00000512215	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
Frame-shit	ENST00000394854	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5CDS-intron	ENST00000394854	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
Frame-shit	ENST00000323055	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5CDS-intron	ENST00000323055	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
Frame-shit	ENST00000394853	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5CDS-intron	ENST00000394853	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5UTR-3CDS	ENST00000507176	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5UTR-intron	ENST00000507176	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
Frame-shit	ENST00000523694	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
5CDS-intron	ENST00000523694	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
intron-3CDS	ENST00000510292	ENST00000373699		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
intron-intron	ENST00000510292	ENST00000483552		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102267896	-	PPIL1	chr6	36839648	-
Frame-shit	ENST00000371953	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
Frame-shit	ENST00000371953	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
Frame-shit	ENST00000371953	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
5CDS-intron	ENST00000371953	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
intron-3CDS	ENST00000472832	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
intron-3CDS	ENST00000472832	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
intron-3CDS	ENST00000472832	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
intron-intron	ENST00000472832	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	68979628	-
Frame-shit	ENST00000367689	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
Frame-shit	ENST00000367689	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
5CDS-intron	ENST00000367689	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
Frame-shit	ENST00000357444	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
Frame-shit	ENST00000357444	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
5CDS-intron	ENST00000357444	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
Frame-shit	ENST00000251507	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
Frame-shit	ENST00000251507	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
5CDS-intron	ENST00000251507	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000325589	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000325589	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000325589	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000367686	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000367686	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000367686	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000367687	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000367687	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000367687	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000347255	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000347255	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000347255	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000489615	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000489615	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000489615	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000478442	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000478442	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000478442	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000486220	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000486220	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000486220	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000392064	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000392064	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000392064	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000367688	ENST00000546011		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000367688	ENST00000209884		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-intron	ENST00000367688	ENST00000493170		TCGA	RV	PRAD	TCGA-M7-A725-01A	RABGAP1L	chr1	174274265	+	KLHL20	chr1	173735285	+
intron-3CDS	ENST00000415486	ENST00000311129		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000415486	ENST00000426998		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000415486	ENST00000530787		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000415486	ENST00000527614		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000415486	ENST00000427203		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000415486	ENST00000341980		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000415486	ENST00000393055		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-3CDS	ENST00000360011	ENST00000311129		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-3CDS	ENST00000360011	ENST00000426998		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-intron	ENST00000360011	ENST00000530787		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-intron	ENST00000360011	ENST00000527614		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-intron	ENST00000360011	ENST00000427203		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-intron	ENST00000360011	ENST00000341980		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
5UTR-intron	ENST00000360011	ENST00000393055		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000331511	ENST00000311129		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000331511	ENST00000426998		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000331511	ENST00000530787		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000331511	ENST00000527614		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000331511	ENST00000427203		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000331511	ENST00000341980		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000331511	ENST00000393055		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000545871	ENST00000311129		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000545871	ENST00000426998		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000545871	ENST00000530787		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000545871	ENST00000527614		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000545871	ENST00000427203		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000545871	ENST00000341980		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000545871	ENST00000393055		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000451717	ENST00000311129		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-3CDS	ENST00000451717	ENST00000426998		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000451717	ENST00000530787		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000451717	ENST00000527614		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000451717	ENST00000427203		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000451717	ENST00000341980		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
intron-intron	ENST00000451717	ENST00000393055		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAI2	chrX	17878629	-	PPP2R1B	chr11	111626174	-
Frame-shit	ENST00000389698	ENST00000555449		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000389698	ENST00000331299		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000389698	ENST00000557611		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000307138	ENST00000555449		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000307138	ENST00000331299		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000307138	ENST00000557611		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000258840	ENST00000555449		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000258840	ENST00000331299		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000258840	ENST00000557611		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000382366	ENST00000555449		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000382366	ENST00000331299		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000382366	ENST00000557611		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000554704	ENST00000555449		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000554704	ENST00000331299		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000554704	ENST00000557611		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	RALGAPA1	chr14	36277936	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000374761	ENST00000340645		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000374761	ENST00000393667		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
5CDS-intron	ENST00000374761	ENST00000472829		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000290101	ENST00000340645		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000290101	ENST00000393667		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
5CDS-intron	ENST00000290101	ENST00000472829		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000374763	ENST00000340645		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000374763	ENST00000393667		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
5CDS-intron	ENST00000374763	ENST00000472829		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000374765	ENST00000340645		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000374765	ENST00000393667		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
5CDS-intron	ENST00000374765	ENST00000472829		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000542643	ENST00000340645		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000542643	ENST00000393667		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
5CDS-intron	ENST00000542643	ENST00000472829		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
intron-3CDS	ENST00000374757	ENST00000340645		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
intron-3CDS	ENST00000374757	ENST00000393667		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
intron-intron	ENST00000374757	ENST00000472829		TCGA	RV	PRAD	TCGA-HC-7748-01A	RAP1GAP	chr1	21922708	-	GOLGB1	chr3	121418732	-
In-frame	ENST00000404969	ENST00000295569		TCGA	RV	PRAD	TCGA-EJ-5501-01A	RARB	chr3	25542814	+	FAM19A4	chr3	68802169	-
In-frame	ENST00000437042	ENST00000295569		TCGA	RV	PRAD	TCGA-EJ-5501-01A	RARB	chr3	25542814	+	FAM19A4	chr3	68802169	-
In-frame	ENST00000330688	ENST00000295569		TCGA	RV	PRAD	TCGA-EJ-5501-01A	RARB	chr3	25542814	+	FAM19A4	chr3	68802169	-
3UTR-3CDS	ENST00000462272	ENST00000295569		TCGA	RV	PRAD	TCGA-EJ-5501-01A	RARB	chr3	25542814	+	FAM19A4	chr3	68802169	-
In-frame	ENST00000458646	ENST00000295569		TCGA	RV	PRAD	TCGA-EJ-5501-01A	RARB	chr3	25542814	+	FAM19A4	chr3	68802169	-
Frame-shit	ENST00000336061	ENST00000261195		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RASSF3	chr12	65004523	+	GYS2	chr12	21733457	-
Frame-shit	ENST00000542104	ENST00000261195		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RASSF3	chr12	65004523	+	GYS2	chr12	21733457	-
3UTR-3CDS	ENST00000540088	ENST00000261195		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	RASSF3	chr12	65004523	+	GYS2	chr12	21733457	-
Frame-shit	ENST00000025008	ENST00000286614		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
5CDS-5UTR	ENST00000025008	ENST00000544227		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
Frame-shit	ENST00000435644	ENST00000286614		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
5CDS-5UTR	ENST00000435644	ENST00000544227		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
intron-3CDS	ENST00000521611	ENST00000286614		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
intron-5UTR	ENST00000521611	ENST00000544227		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
In-frame	ENST00000539297	ENST00000286614		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
5CDS-5UTR	ENST00000539297	ENST00000544227		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	RB1CC1	chr8	53596109	-	MMP16	chr8	89086971	-
In-frame	ENST00000262241	ENST00000288135		TCGA	RV	PRAD	TCGA-EJ-7327-01A	RCOR1	chr14	103148315	+	KIT	chr4	55561678	+
In-frame	ENST00000570597	ENST00000288135		TCGA	RV	PRAD	TCGA-EJ-7327-01A	RCOR1	chr14	103148315	+	KIT	chr4	55561678	+
Frame-shit	ENST00000368802	ENST00000230538		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
Frame-shit	ENST00000368802	ENST00000522006		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
Frame-shit	ENST00000368802	ENST00000389463		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
Frame-shit	ENST00000368802	ENST00000424408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368802	ENST00000524032		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368802	ENST00000431543		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368802	ENST00000368638		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368802	ENST00000453937		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000368805	ENST00000230538		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000368805	ENST00000522006		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000368805	ENST00000389463		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000368805	ENST00000424408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368805	ENST00000524032		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368805	ENST00000431543		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368805	ENST00000368638		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000368805	ENST00000453937		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-3CDS	ENST00000435970	ENST00000230538		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-3CDS	ENST00000435970	ENST00000522006		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-3CDS	ENST00000435970	ENST00000389463		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-3CDS	ENST00000435970	ENST00000424408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-intron	ENST00000435970	ENST00000524032		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-intron	ENST00000435970	ENST00000431543		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-intron	ENST00000435970	ENST00000368638		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5UTR-intron	ENST00000435970	ENST00000453937		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000358835	ENST00000230538		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000358835	ENST00000522006		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000358835	ENST00000389463		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
In-frame	ENST00000358835	ENST00000424408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000358835	ENST00000524032		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000358835	ENST00000431543		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000358835	ENST00000368638		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000358835	ENST00000453937		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-3CDS	ENST00000462119	ENST00000230538		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-3CDS	ENST00000462119	ENST00000522006		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-3CDS	ENST00000462119	ENST00000389463		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-3CDS	ENST00000462119	ENST00000424408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-intron	ENST00000462119	ENST00000524032		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-intron	ENST00000462119	ENST00000431543		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-intron	ENST00000462119	ENST00000368638		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
intron-intron	ENST00000462119	ENST00000453937		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	REV3L	chr6	111803953	-	LAMA4	chr6	112466135	-
5CDS-intron	ENST00000470422	ENST00000371917		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000470422	ENST00000493140		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000246043	ENST00000371917		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000246043	ENST00000493140		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000377813	ENST00000371917		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000377813	ENST00000493140		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000377807	ENST00000371917		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000377807	ENST00000493140		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000360807	ENST00000371917		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000360807	ENST00000493140		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000455029	ENST00000371917		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000455029	ENST00000493140		TCGA	RV	PRAD	TCGA-CH-5745-01A	RRBP1	chr20	17594323	-	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000319540	ENST00000265404		TCGA	RV	PRAD	TCGA-HC-7212-01A	SCD5	chr4	83557744	-	STAP1	chr4	68472014	+
In-frame	ENST00000319540	ENST00000396225		TCGA	RV	PRAD	TCGA-HC-7212-01A	SCD5	chr4	83557744	-	STAP1	chr4	68472014	+
intron-3CDS	ENST00000273908	ENST00000265404		TCGA	RV	PRAD	TCGA-HC-7212-01A	SCD5	chr4	83557744	-	STAP1	chr4	68472014	+
intron-3CDS	ENST00000273908	ENST00000396225		TCGA	RV	PRAD	TCGA-HC-7212-01A	SCD5	chr4	83557744	-	STAP1	chr4	68472014	+
intron-3CDS	ENST00000282709	ENST00000265404		TCGA	RV	PRAD	TCGA-HC-7212-01A	SCD5	chr4	83557744	-	STAP1	chr4	68472014	+
intron-3CDS	ENST00000282709	ENST00000396225		TCGA	RV	PRAD	TCGA-HC-7212-01A	SCD5	chr4	83557744	-	STAP1	chr4	68472014	+
In-frame	ENST00000456518	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
In-frame	ENST00000456518	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000456518	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000456518	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000456518	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000456518	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397174	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397174	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397174	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397174	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397174	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000402904	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000402904	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000402904	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000402904	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000402904	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361191	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361191	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361191	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361191	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361191	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000397171	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397171	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397171	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397171	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000397171	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000361705	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361705	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361705	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361705	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000361705	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000326197	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000326197	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000326197	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000326197	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000326197	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372595	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372595	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372595	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372595	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372595	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000337495	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000337495	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000337495	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000337495	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000337495	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372596	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372596	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372596	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372596	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372596	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000372597	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372597	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372597	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372597	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
5CDS-intron	ENST00000372597	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000545844		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000567887		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000372915		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000361689		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000539005		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000317713		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000564288		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-3CDS	ENST00000472037	ENST00000289893		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-intron	ENST00000472037	ENST00000536367		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-intron	ENST00000472037	ENST00000484793		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-intron	ENST00000472037	ENST00000602421		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
intron-intron	ENST00000472037	ENST00000476350		TCGA	RV	PRAD	TCGA-CH-5788-01A	SCMH1	chr1	41608550	-	MACF1	chr1	39945470	+
Frame-shit	ENST00000371514	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000371514	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000371514	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-intron	ENST00000371514	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5UTR-3CDS	ENST00000528311	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5UTR-3UTR	ENST00000528311	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5UTR-3UTR	ENST00000528311	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5UTR-intron	ENST00000528311	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
Frame-shit	ENST00000371509	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000371509	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000371509	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-intron	ENST00000371509	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
Frame-shit	ENST00000407246	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000407246	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000407246	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-intron	ENST00000407246	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
Frame-shit	ENST00000371513	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000371513	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-3UTR	ENST00000371513	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
5CDS-intron	ENST00000371513	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3CDS	ENST00000473584	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000473584	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000473584	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-intron	ENST00000473584	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3CDS	ENST00000430330	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000430330	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000430330	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-intron	ENST00000430330	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3CDS	ENST00000408941	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000408941	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000408941	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-intron	ENST00000408941	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3CDS	ENST00000435345	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000435345	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000435345	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-intron	ENST00000435345	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3CDS	ENST00000488965	ENST00000533760		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000488965	ENST00000397957		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-3UTR	ENST00000488965	ENST00000316851		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
intron-intron	ENST00000488965	ENST00000401611		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126599	+
In-frame	ENST00000348405	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000348405	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000348405	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000348405	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000348405	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000513858	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000513858	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000513858	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000513858	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000513858	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000395310	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000395310	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
In-frame	ENST00000395310	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000395310	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000395310	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000443462	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000443462	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000443462	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000443462	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000443462	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000509142	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000509142	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000509142	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000509142	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000509142	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000326950	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000326950	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000326950	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000326950	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000326950	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000432794	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000432794	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000432794	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000432794	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000432794	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000311785	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000311785	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000311785	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000311785	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000311785	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000448323	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000448323	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
Frame-shit	ENST00000448323	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000448323	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5CDS-5UTR	ENST00000448323	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000505472	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000505472	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000505472	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000505472	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000505472	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000500777	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000500777	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000500777	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000500777	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000500777	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000508502	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000508502	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000508502	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000508502	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000508502	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000355196	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000355196	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000355196	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000355196	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000355196	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000264405	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000264405	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000264405	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000264405	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000264405	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000505984	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000505984	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000505984	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000505984	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000505984	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000508479	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000508479	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000508479	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000508479	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000508479	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000436790	ENST00000507656		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000436790	ENST00000451299		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-3CDS	ENST00000436790	ENST00000309439		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000436790	ENST00000510270		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
intron-5UTR	ENST00000436790	ENST00000512680		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83739815	-	ANAPC10	chr4	145985844	-
5UTR-3CDS	ENST00000339861	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000339861	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000339861	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000339861	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000420987	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000420987	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000420987	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420987	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000455551	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000455551	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000455551	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000455551	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000343780	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000343780	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000343780	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000343780	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000450295	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000450295	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000450295	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000450295	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000438547	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000438547	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000438547	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000438547	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000356444	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000356444	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000356444	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000356444	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000422704	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000422704	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-3CDS	ENST00000422704	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
5UTR-intron	ENST00000422704	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000420101	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000420101	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000420101	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000420101	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000469653	ENST00000374140		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000469653	ENST00000350696		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-3CDS	ENST00000469653	ENST00000317613		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000343817		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000394646		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000374136		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000462143		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000463806		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000342620		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000374134		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
intron-intron	ENST00000469653	ENST00000462403		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SEMA4D	chr9	92112834	-	RGS3	chr9	116241771	+
Frame-shit	ENST00000373710	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373710	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000373710	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000373710	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000536859	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-intron	ENST00000536859	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
intron-intron	ENST00000536859	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000373709	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000373709	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000373709	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000536384	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000536384	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000536384	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
Frame-shit	ENST00000491976	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000491976	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000491976	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7231-01A	SERINC2	chr1	31907521	+	FN1	chr2	216274837	-
5UTR-5UTR	ENST00000357799	ENST00000393674		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	SGOL2	chr2	201390975	+	FBXO8	chr4	175184251	-
5UTR-5UTR	ENST00000357799	ENST00000503293		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	SGOL2	chr2	201390975	+	FBXO8	chr4	175184251	-
5UTR-5UTR	ENST00000409203	ENST00000393674		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	SGOL2	chr2	201390975	+	FBXO8	chr4	175184251	-
5UTR-5UTR	ENST00000409203	ENST00000503293		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	SGOL2	chr2	201390975	+	FBXO8	chr4	175184251	-
intron-5UTR	ENST00000469840	ENST00000393674		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	SGOL2	chr2	201390975	+	FBXO8	chr4	175184251	-
intron-5UTR	ENST00000469840	ENST00000503293		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	SGOL2	chr2	201390975	+	FBXO8	chr4	175184251	-
Frame-shit	ENST00000359782	ENST00000379350		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000379348		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000332995		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000482982		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000379345		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000457702		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000379335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000359782	ENST00000379329		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
Frame-shit	ENST00000379262	ENST00000379350		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000379348		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000332995		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000482982		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000379345		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000457702		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000379335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000379262	ENST00000379329		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
Frame-shit	ENST00000397350	ENST00000379350		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000379348		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000332995		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000482982		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000379345		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000457702		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000379335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000397350	ENST00000379329		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
Frame-shit	ENST00000606117	ENST00000379350		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000379348		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000332995		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000482982		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000379345		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000457702		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000379335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
5CDS-intron	ENST00000606117	ENST00000379329		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SIRT5	chr6	13601181	+	PHACTR1	chr6	13273092	+
Frame-shit	ENST00000432059	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000432059	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000432059	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000432059	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000432059	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000432059	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000432059	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000335472	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000335472	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000335472	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000335472	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000335472	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000335472	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000335472	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000264986	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000264986	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000264986	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000264986	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000264986	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000264986	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000264986	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000507030	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000507030	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000507030	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000507030	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000507030	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000507030	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000507030	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000394062	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000394062	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000394062	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394062	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394062	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394062	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394062	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000394059	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000394059	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000394059	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394059	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394059	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394059	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000394059	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-3CDS	ENST00000511315	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-3CDS	ENST00000511315	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-3CDS	ENST00000511315	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-intron	ENST00000511315	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-intron	ENST00000511315	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-intron	ENST00000511315	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5UTR-intron	ENST00000511315	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000511374	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000511374	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000511374	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000511374	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000511374	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000511374	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000511374	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000502607	ENST00000503581		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000502607	ENST00000370621		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000502607	ENST00000370616		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000502607	ENST00000393380		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000502607	ENST00000342421		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000502607	ENST00000370618		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
5CDS-intron	ENST00000502607	ENST00000486069		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC10A7	chr4	147442770	-	EYS	chr6	65767620	-
Frame-shit	ENST00000255559	ENST00000366554		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
Frame-shit	ENST00000255559	ENST00000331838		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
5CDS-5UTR	ENST00000255559	ENST00000469376		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
Frame-shit	ENST00000542342	ENST00000366554		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
Frame-shit	ENST00000542342	ENST00000331838		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
5CDS-5UTR	ENST00000542342	ENST00000469376		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
intron-3CDS	ENST00000579988	ENST00000366554		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
intron-3CDS	ENST00000579988	ENST00000331838		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
intron-5UTR	ENST00000579988	ENST00000469376		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
Frame-shit	ENST00000579732	ENST00000366554		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
Frame-shit	ENST00000579732	ENST00000331838		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
5CDS-5UTR	ENST00000579732	ENST00000469376		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC39A11	chr17	71027695	-	OPN3	chr1	241761299	-
In-frame	ENST00000258538	ENST00000455511		TCGA	RV	PRAD	TCGA-G9-7521-01A	SLC41A2	chr12	105280071	-	ANAPC7	chr12	110825697	-
5CDS-intron	ENST00000258538	ENST00000481473		TCGA	RV	PRAD	TCGA-G9-7521-01A	SLC41A2	chr12	105280071	-	ANAPC7	chr12	110825697	-
5CDS-intron	ENST00000258538	ENST00000450008		TCGA	RV	PRAD	TCGA-G9-7521-01A	SLC41A2	chr12	105280071	-	ANAPC7	chr12	110825697	-
intron-3CDS	ENST00000549713	ENST00000455511		TCGA	RV	PRAD	TCGA-G9-7521-01A	SLC41A2	chr12	105280071	-	ANAPC7	chr12	110825697	-
intron-intron	ENST00000549713	ENST00000481473		TCGA	RV	PRAD	TCGA-G9-7521-01A	SLC41A2	chr12	105280071	-	ANAPC7	chr12	110825697	-
intron-intron	ENST00000549713	ENST00000450008		TCGA	RV	PRAD	TCGA-G9-7521-01A	SLC41A2	chr12	105280071	-	ANAPC7	chr12	110825697	-
Frame-shit	ENST00000360370	ENST00000273450		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000360370	ENST00000472186		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000360370	ENST00000452905		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000360370	ENST00000393434		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000360370	ENST00000393431		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-intron	ENST00000360370	ENST00000413612		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000360370	ENST00000455064		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
Frame-shit	ENST00000346785	ENST00000273450		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000346785	ENST00000472186		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000346785	ENST00000452905		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000346785	ENST00000393434		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000346785	ENST00000393431		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-intron	ENST00000346785	ENST00000413612		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000346785	ENST00000455064		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-3CDS	ENST00000383598	ENST00000273450		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000383598	ENST00000472186		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000383598	ENST00000452905		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000383598	ENST00000393434		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000383598	ENST00000393431		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000383598	ENST00000413612		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000383598	ENST00000455064		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
Frame-shit	ENST00000315891	ENST00000273450		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000315891	ENST00000472186		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000315891	ENST00000452905		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000315891	ENST00000393434		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000315891	ENST00000393431		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-intron	ENST00000315891	ENST00000413612		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5CDS-5UTR	ENST00000315891	ENST00000455064		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-3CDS	ENST00000508835	ENST00000273450		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508835	ENST00000472186		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508835	ENST00000452905		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508835	ENST00000393434		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508835	ENST00000393431		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-intron	ENST00000508835	ENST00000413612		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
intron-5UTR	ENST00000508835	ENST00000455064		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-3CDS	ENST00000514023	ENST00000273450		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000514023	ENST00000472186		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000514023	ENST00000452905		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000514023	ENST00000393434		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000514023	ENST00000393431		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-intron	ENST00000514023	ENST00000413612		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
5UTR-5UTR	ENST00000514023	ENST00000455064		TCGA	RV	PRAD	TCGA-V1-A8MM-01A	SLC41A3	chr3	125786790	-	ALDH1L1	chr3	125879845	-
Frame-shit	ENST00000358026	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000358026	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000358026	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000358026	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000344626	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000344626	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000344626	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000344626	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000429416	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000429416	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000429416	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000429416	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000541122	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000541122	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000541122	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000541122	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000589677	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000589677	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000589677	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000589677	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000444061	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000444061	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000444061	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000444061	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000590574	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000590574	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000590574	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000590574	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000413806	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000413806	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000413806	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000413806	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000450717	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000450717	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000450717	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000450717	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000538456	ENST00000407327		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000538456	ENST00000335757		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000538456	ENST00000586078		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
intron-intron	ENST00000538456	ENST00000588214		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SMARCA4	chr19	11114073	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000374232	ENST00000337530		TCGA	RV	PRAD	TCGA-HC-8261-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000374244		TCGA	RV	PRAD	TCGA-HC-8261-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
5CDS-intron	ENST00000374232	ENST00000536272		TCGA	RV	PRAD	TCGA-HC-8261-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000337530		TCGA	RV	PRAD	TCGA-HC-8261-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000374244		TCGA	RV	PRAD	TCGA-HC-8261-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
intron-intron	ENST00000604751	ENST00000536272		TCGA	RV	PRAD	TCGA-HC-8261-01A	SNX30	chr9	115580095	+	KIAA1958	chr9	115380151	+
In-frame	ENST00000371828	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371828	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371828	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
In-frame	ENST00000371802	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371802	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371802	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
Frame-shit	ENST00000371856	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371856	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371856	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
In-frame	ENST00000347458	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000347458	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000347458	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
In-frame	ENST00000340954	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000340954	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000340954	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
In-frame	ENST00000371792	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371792	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000371792	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
In-frame	ENST00000360426	ENST00000001146		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000360426	ENST00000412253		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
5CDS-5UTR	ENST00000360426	ENST00000546307		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	STAU1	chr20	47768119	-	CYP26B1	chr2	72362548	-
In-frame	ENST00000339208	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
In-frame	ENST00000346661	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
In-frame	ENST00000345615	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
In-frame	ENST00000502449	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
In-frame	ENST00000591288	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
In-frame	ENST00000394378	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
In-frame	ENST00000585472	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
intron-3CDS	ENST00000588194	ENST00000378079		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	SYNRG	chr17	35969327	-	FBXO47	chr17	37107942	-
intron-5UTR	ENST00000419821	ENST00000337006		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000419821	ENST00000376083		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000419821	ENST00000357081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000419821	ENST00000376109		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000419821	ENST00000432218		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000419821	ENST00000376081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000419821	ENST00000491784		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000419821	ENST00000376080		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-5UTR	ENST00000392533	ENST00000337006		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-5UTR	ENST00000392533	ENST00000376083		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-5UTR	ENST00000392533	ENST00000357081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-intron	ENST00000392533	ENST00000376109		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-intron	ENST00000392533	ENST00000432218		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-5UTR	ENST00000392533	ENST00000376081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-intron	ENST00000392533	ENST00000491784		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
5UTR-intron	ENST00000392533	ENST00000376080		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000537952	ENST00000337006		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000537952	ENST00000376083		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000537952	ENST00000357081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000537952	ENST00000376109		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000537952	ENST00000432218		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000537952	ENST00000376081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000537952	ENST00000491784		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000537952	ENST00000376080		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000543709	ENST00000337006		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000543709	ENST00000376083		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000543709	ENST00000357081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000543709	ENST00000376109		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000543709	ENST00000432218		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000543709	ENST00000376081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000543709	ENST00000491784		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000543709	ENST00000376080		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000536979	ENST00000337006		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000536979	ENST00000376083		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000536979	ENST00000357081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000536979	ENST00000376109		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000536979	ENST00000432218		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000536979	ENST00000376081		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000536979	ENST00000491784		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000536979	ENST00000376080		TCGA	RV	PRAD	TCGA-CH-5794-01A	TAOK3	chr12	118810453	-	AGTPBP1	chr9	88327481	-
intron-3CDS	ENST00000539805	ENST00000217246		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-3CDS	ENST00000539805	ENST00000310348		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-3UTR	ENST00000539805	ENST00000464883		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000539805	ENST00000402914		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000539805	ENST00000378058		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000539805	ENST00000407045		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5UTR-3CDS	ENST00000480436	ENST00000217246		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5UTR-3CDS	ENST00000480436	ENST00000310348		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5UTR-3UTR	ENST00000480436	ENST00000464883		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5UTR-intron	ENST00000480436	ENST00000402914		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5UTR-intron	ENST00000480436	ENST00000378058		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5UTR-intron	ENST00000480436	ENST00000407045		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
Frame-shit	ENST00000337743	ENST00000217246		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
Frame-shit	ENST00000337743	ENST00000310348		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5CDS-3UTR	ENST00000337743	ENST00000464883		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5CDS-intron	ENST00000337743	ENST00000402914		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5CDS-intron	ENST00000337743	ENST00000378058		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
5CDS-intron	ENST00000337743	ENST00000407045		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-3CDS	ENST00000544472	ENST00000217246		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-3CDS	ENST00000544472	ENST00000310348		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-3UTR	ENST00000544472	ENST00000464883		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000544472	ENST00000402914		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000544472	ENST00000378058		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000544472	ENST00000407045		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13567897	-	MACROD2	chr20	14665489	+
In-frame	ENST00000405876	ENST00000354300		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TCHP	chr12	110342598	+	PPTC7	chr12	110976078	-
In-frame	ENST00000312777	ENST00000354300		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TCHP	chr12	110342598	+	PPTC7	chr12	110976078	-
intron-3CDS	ENST00000550780	ENST00000354300		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TCHP	chr12	110342598	+	PPTC7	chr12	110976078	-
5CDS-intron	ENST00000373644	ENST00000343571		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TET1	chr10	70442730	+	EFHC2	chrX	44172002	-
5CDS-intron	ENST00000373644	ENST00000420999		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TET1	chr10	70442730	+	EFHC2	chrX	44172002	-
5CDS-intron	ENST00000420415	ENST00000491186		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000420415	ENST00000325318		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000360110	ENST00000491186		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000360110	ENST00000325318		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
3UTR-intron	ENST00000540528	ENST00000491186		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
3UTR-intron	ENST00000540528	ENST00000325318		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000392396	ENST00000491186		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000392396	ENST00000325318		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000535031	ENST00000491186		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-intron	ENST00000535031	ENST00000325318		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
intron-intron	ENST00000465288	ENST00000491186		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
intron-intron	ENST00000465288	ENST00000325318		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TFRC	chr3	195791180	-	TCTEX1D2	chr3	196033883	-
5CDS-5UTR	ENST00000294543	ENST00000474874		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000294543	ENST00000377482		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-intron	ENST00000294543	ENST00000467067		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000294543	ENST00000469499		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000375127	ENST00000474874		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000375127	ENST00000377482		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-intron	ENST00000375127	ENST00000467067		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000375127	ENST00000469499		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
intron-5UTR	ENST00000489814	ENST00000474874		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
intron-5UTR	ENST00000489814	ENST00000377482		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
intron-intron	ENST00000489814	ENST00000467067		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
intron-5UTR	ENST00000489814	ENST00000469499		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000375122	ENST00000474874		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000375122	ENST00000377482		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-intron	ENST00000375122	ENST00000467067		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000375122	ENST00000469499		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMCO4	chr1	20082127	-	ERRFI1	chr1	8075752	-
5CDS-5UTR	ENST00000449592	ENST00000343638		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000302904		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000527034		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000533177		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000436088		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000393606		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000529383		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000526094		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5CDS-5UTR	ENST00000449592	ENST00000537550		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000343638		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000302904		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000527034		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000533177		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000436088		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000393606		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000529383		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000526094		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000540377	ENST00000537550		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000343638		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000302904		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000527034		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000533177		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000436088		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000393606		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000529383		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000526094		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000538055	ENST00000537550		TCGA	RV	PRAD	TCGA-G9-6494-01A	TMEM120B	chr12	122150870	+	UBTF	chr17	42295664	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6385-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7079-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-3CDS	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
In-frame	ENST00000259339	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-5UTR	ENST00000259339	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-intron	ENST00000259339	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-5UTR	ENST00000259339	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-5UTR	ENST00000259339	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-5UTR	ENST00000259339	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-5UTR	ENST00000259339	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-intron	ENST00000259339	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-intron	ENST00000259339	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
5CDS-intron	ENST00000259339	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-3CDS	ENST00000486372	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-5UTR	ENST00000486372	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-intron	ENST00000486372	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-5UTR	ENST00000486372	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-5UTR	ENST00000486372	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-5UTR	ENST00000486372	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-5UTR	ENST00000486372	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-intron	ENST00000486372	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-intron	ENST00000486372	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
3UTR-intron	ENST00000486372	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	TOR1B	chr9	132566617	+	ARHGAP27	chr17	43483449	-
intron-3CDS	ENST00000537855	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000537855	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000537855	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000537855	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000537855	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000379096	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379096	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379096	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379096	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379096	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000518937	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000518937	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000518937	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000518937	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000518937	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000519303	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000519303	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000519303	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000519303	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000519303	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000517427	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000517427	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000517427	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000517427	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000517427	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000520527	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000520527	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000520527	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000520527	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000520527	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000448733	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000448733	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000448733	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000448733	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000448733	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000379097	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379097	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379097	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379097	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000379097	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000523395	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000523395	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000523395	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000523395	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
intron-intron	ENST00000523395	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	TPD52	chr8	80947749	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000361136	ENST00000355875		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000361136	ENST00000366541		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000361136	ENST00000343783		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000361136	ENST00000391846		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000361136	ENST00000496361		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000361875	ENST00000355875		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000361875	ENST00000366541		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000361875	ENST00000343783		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000361875	ENST00000391846		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000361875	ENST00000496361		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000492828	ENST00000355875		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000492828	ENST00000366541		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000492828	ENST00000343783		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000492828	ENST00000391846		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000492828	ENST00000496361		TCGA	RV	PRAD	TCGA-HC-7233-01A	TSC22D2	chr3	150129095	+	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000498443	ENST00000372429		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
intron-3CDS	ENST00000498443	ENST00000315480		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
intron-3CDS	ENST00000498443	ENST00000358355		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
intron-intron	ENST00000498443	ENST00000472108		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
Frame-shit	ENST00000372003	ENST00000372429		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
Frame-shit	ENST00000372003	ENST00000315480		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
Frame-shit	ENST00000372003	ENST00000358355		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
5CDS-intron	ENST00000372003	ENST00000472108		TCGA	RV	PRAD	TCGA-G9-6371-01A	TSPAN1	chr1	46651630	+	USP20	chr9	132620746	+
5UTR-3CDS	ENST00000267890	ENST00000452443		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TTBK2	chr15	43212636	-	TGM7	chr15	43585829	-
5UTR-3CDS	ENST00000567840	ENST00000452443		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TTBK2	chr15	43212636	-	TGM7	chr15	43585829	-
5UTR-3CDS	ENST00000567274	ENST00000452443		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TTBK2	chr15	43212636	-	TGM7	chr15	43585829	-
intron-3CDS	ENST00000567485	ENST00000452443		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TTBK2	chr15	43212636	-	TGM7	chr15	43585829	-
Frame-shit	ENST00000557636	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-3UTR	ENST00000557636	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-intron	ENST00000557636	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000286650	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000286650	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
intron-intron	ENST00000286650	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
Frame-shit	ENST00000298832	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-3UTR	ENST00000298832	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-intron	ENST00000298832	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
Frame-shit	ENST00000556893	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-3UTR	ENST00000556893	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-intron	ENST00000556893	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
Frame-shit	ENST00000554510	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-3UTR	ENST00000554510	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
5CDS-intron	ENST00000554510	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
intron-3CDS	ENST00000556977	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
intron-3UTR	ENST00000556977	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
intron-intron	ENST00000556977	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
3UTR-3CDS	ENST00000555422	ENST00000286639		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
3UTR-3UTR	ENST00000555422	ENST00000555795		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
3UTR-intron	ENST00000555422	ENST00000555504		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	TTLL5	chr14	76238197	+	BATF	chr14	76012805	+
Frame-shit	ENST00000375990	ENST00000318789		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000375990	ENST00000475937		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000375990	ENST00000493089		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000375990	ENST00000484350		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000375990	ENST00000318779		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000375990	ENST00000491238		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000375990	ENST00000498215		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000375990	ENST00000468577		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000375990	ENST00000472382		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000259253	ENST00000318789		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000259253	ENST00000475937		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000259253	ENST00000493089		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
Frame-shit	ENST00000259253	ENST00000484350		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000259253	ENST00000318779		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000259253	ENST00000491238		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000259253	ENST00000498215		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000259253	ENST00000468577		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
5CDS-intron	ENST00000259253	ENST00000472382		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-3CDS	ENST00000465836	ENST00000318789		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-3CDS	ENST00000465836	ENST00000475937		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-3CDS	ENST00000465836	ENST00000493089		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-3CDS	ENST00000465836	ENST00000484350		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-intron	ENST00000465836	ENST00000318779		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-intron	ENST00000465836	ENST00000491238		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-intron	ENST00000465836	ENST00000498215		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-intron	ENST00000465836	ENST00000468577		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
intron-intron	ENST00000465836	ENST00000472382		TCGA	RV	PRAD	TCGA-VP-A87K-01A	UGGT1	chr2	128939864	+	FOXP1	chr3	71027180	-
In-frame	ENST00000377227	ENST00000427908		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377227	ENST00000423571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377227	ENST00000439742		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377227	ENST00000513063		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377219	ENST00000427908		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377219	ENST00000423571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377219	ENST00000439742		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000377219	ENST00000513063		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000506128	ENST00000427908		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000506128	ENST00000423571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000506128	ENST00000439742		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000506128	ENST00000513063		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000511320	ENST00000427908		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000511320	ENST00000423571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000511320	ENST00000439742		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000511320	ENST00000513063		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
intron-3CDS	ENST00000503273	ENST00000427908		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
intron-3CDS	ENST00000503273	ENST00000423571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
intron-3CDS	ENST00000503273	ENST00000439742		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
intron-3CDS	ENST00000503273	ENST00000513063		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	UIMC1	chr5	176409470	-	MXD3	chr5	176738485	-
In-frame	ENST00000287272	ENST00000338825		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000287272	ENST00000520657		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000453357	ENST00000338825		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000453357	ENST00000520657		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000404895	ENST00000338825		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000404895	ENST00000520657		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000420357	ENST00000338825		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000420357	ENST00000520657		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
In-frame	ENST00000416672	ENST00000338825		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
5CDS-3UTR	ENST00000416672	ENST00000520657		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000449677	ENST00000338825		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000449677	ENST00000520657		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	UNC5D	chr8	35093405	+	EIF4EBP1	chr8	37914599	+
3UTR-3CDS	ENST00000262803	ENST00000531120		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
3UTR-3CDS	ENST00000262803	ENST00000524896		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
3UTR-intron	ENST00000262803	ENST00000532054		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
Frame-shit	ENST00000599848	ENST00000531120		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
Frame-shit	ENST00000599848	ENST00000524896		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
5CDS-intron	ENST00000599848	ENST00000532054		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000600310	ENST00000531120		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000600310	ENST00000524896		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
intron-intron	ENST00000600310	ENST00000532054		TCGA	RV	PRAD	TCGA-EJ-5494-01A	UPF1	chr19	18979038	+	EIF3M	chr11	32611132	+
In-frame	ENST00000261497	ENST00000397035		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
In-frame	ENST00000261497	ENST00000397041		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
In-frame	ENST00000261497	ENST00000309890		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000261497	ENST00000397039		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000261497	ENST00000359983		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000261497	ENST00000352011		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000261497	ENST00000397043		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-3CDS	ENST00000537526	ENST00000397035		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-3CDS	ENST00000537526	ENST00000397041		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-3CDS	ENST00000537526	ENST00000309890		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000537526	ENST00000397039		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000537526	ENST00000359983		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000537526	ENST00000352011		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000537526	ENST00000397043		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-3CDS	ENST00000455117	ENST00000397035		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-3CDS	ENST00000455117	ENST00000397041		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-3CDS	ENST00000455117	ENST00000309890		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000455117	ENST00000397039		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000455117	ENST00000359983		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000455117	ENST00000352011		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
intron-5UTR	ENST00000455117	ENST00000397043		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	USP22	chr17	20945978	-	ATP2A3	chr17	3848442	-
In-frame	ENST00000378308	ENST00000550735		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
In-frame	ENST00000378308	ENST00000551404		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
5CDS-intron	ENST00000378308	ENST00000547305		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
5CDS-3UTR	ENST00000378308	ENST00000546394		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
In-frame	ENST00000324545	ENST00000550735		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
In-frame	ENST00000324545	ENST00000551404		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
5CDS-intron	ENST00000324545	ENST00000547305		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
5CDS-3UTR	ENST00000324545	ENST00000546394		TCGA	RV	PRAD	TCGA-HC-7818-01A	USP9X	chrX	40982977	+	MAPKAPK5	chr12	112303054	+
Frame-shit	ENST00000249837	ENST00000265807		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000249837	ENST00000518040		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000249837	ENST00000519207		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000261517	ENST00000265807		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000261517	ENST00000518040		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000261517	ENST00000519207		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000395896	ENST00000265807		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000395896	ENST00000518040		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000395896	ENST00000519207		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000395898	ENST00000265807		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000395898	ENST00000518040		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
Frame-shit	ENST00000395898	ENST00000519207		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
intron-3CDS	ENST00000558919	ENST00000265807		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
intron-3CDS	ENST00000558919	ENST00000518040		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
intron-3CDS	ENST00000558919	ENST00000519207		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	VPS13C	chr15	62269281	-	SH2D4A	chr8	19250829	+
In-frame	ENST00000358136	ENST00000263932		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-5UTR	ENST00000358136	ENST00000417814		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-intron	ENST00000358136	ENST00000413146		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-intron	ENST00000358136	ENST00000479933		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
In-frame	ENST00000356315	ENST00000263932		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-5UTR	ENST00000356315	ENST00000417814		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-intron	ENST00000356315	ENST00000413146		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-intron	ENST00000356315	ENST00000479933		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-3CDS	ENST00000496628	ENST00000263932		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-5UTR	ENST00000496628	ENST00000417814		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-intron	ENST00000496628	ENST00000413146		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-intron	ENST00000496628	ENST00000479933		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
In-frame	ENST00000543766	ENST00000263932		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-5UTR	ENST00000543766	ENST00000417814		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-intron	ENST00000543766	ENST00000413146		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
5CDS-intron	ENST00000543766	ENST00000479933		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-3CDS	ENST00000471923	ENST00000263932		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-5UTR	ENST00000471923	ENST00000417814		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-intron	ENST00000471923	ENST00000413146		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-intron	ENST00000471923	ENST00000479933		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-3CDS	ENST00000543710	ENST00000263932		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-5UTR	ENST00000543710	ENST00000417814		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-intron	ENST00000543710	ENST00000413146		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
intron-intron	ENST00000543710	ENST00000479933		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	VPS13D	chr1	12516186	+	TNFRSF8	chr1	12157158	+
Frame-shit	ENST00000361042	ENST00000381527		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
Frame-shit	ENST00000361042	ENST00000536792		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
5CDS-intron	ENST00000361042	ENST00000480323		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
Frame-shit	ENST00000335327	ENST00000381527		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
Frame-shit	ENST00000335327	ENST00000536792		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
5CDS-intron	ENST00000335327	ENST00000480323		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
intron-3CDS	ENST00000496788	ENST00000381527		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
intron-3CDS	ENST00000496788	ENST00000536792		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
intron-intron	ENST00000496788	ENST00000480323		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WASF3	chr13	27257111	+	CDK8	chr13	26911704	+
intron-3CDS	ENST00000315769	ENST00000521015		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-3CDS	ENST00000315769	ENST00000256398		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-3CDS	ENST00000315769	ENST00000542181		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000315769	ENST00000523760		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000315769	ENST00000524103		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000315769	ENST00000537665		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000315769	ENST00000380353		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
Frame-shit	ENST00000297737	ENST00000521015		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
Frame-shit	ENST00000297737	ENST00000256398		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
Frame-shit	ENST00000297737	ENST00000542181		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
5CDS-intron	ENST00000297737	ENST00000523760		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
5CDS-intron	ENST00000297737	ENST00000524103		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
5CDS-intron	ENST00000297737	ENST00000537665		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
5CDS-intron	ENST00000297737	ENST00000380353		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-3CDS	ENST00000523823	ENST00000521015		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-3CDS	ENST00000523823	ENST00000256398		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-3CDS	ENST00000523823	ENST00000542181		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000523823	ENST00000523760		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000523823	ENST00000524103		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000523823	ENST00000537665		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
intron-intron	ENST00000523823	ENST00000380353		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ZMAT4	chr8	40532223	-	ELP3	chr8	28047166	+
5CDS-5UTR	ENST00000369577	ENST00000567164		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000369577	ENST00000219301		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000369577	ENST00000543437		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-intron	ENST00000369577	ENST00000563336		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000339907	ENST00000567164		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000339907	ENST00000219301		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000339907	ENST00000543437		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-intron	ENST00000339907	ENST00000563336		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000392985	ENST00000567164		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000392985	ENST00000219301		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-5UTR	ENST00000392985	ENST00000543437		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
5CDS-intron	ENST00000392985	ENST00000563336		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
3UTR-5UTR	ENST00000369578	ENST00000567164		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
3UTR-5UTR	ENST00000369578	ENST00000219301		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
3UTR-5UTR	ENST00000369578	ENST00000543437		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
3UTR-intron	ENST00000369578	ENST00000563336		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58328116	-
intron-intron	ENST00000419886	ENST00000592864		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-intron	ENST00000419886	ENST00000360228		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-intron	ENST00000419886	ENST00000573710		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-5UTR	ENST00000419886	ENST00000574822		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-intron	ENST00000344980	ENST00000592864		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-intron	ENST00000344980	ENST00000360228		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-intron	ENST00000344980	ENST00000573710		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
intron-5UTR	ENST00000344980	ENST00000574822		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ZNF433	chr19	12140955	-	CACNA1A	chr19	13341023	-
Frame-shit	ENST00000588268	ENST00000554581		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000588268	ENST00000407796		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000588268	ENST00000349310		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000588268	ENST00000402615		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000588268	ENST00000555528		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000588268	ENST00000554848		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000588268	ENST00000555458		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000588268	ENST00000554192		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000588268	ENST00000544168		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000588268	ENST00000554585		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000360357	ENST00000554581		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000360357	ENST00000407796		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000360357	ENST00000349310		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000360357	ENST00000402615		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000360357	ENST00000555528		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
Frame-shit	ENST00000360357	ENST00000554848		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000360357	ENST00000555458		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000360357	ENST00000554192		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000360357	ENST00000544168		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5CDS-intron	ENST00000360357	ENST00000554585		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-3CDS	ENST00000540605	ENST00000554581		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-3CDS	ENST00000540605	ENST00000407796		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-3CDS	ENST00000540605	ENST00000349310		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-3CDS	ENST00000540605	ENST00000402615		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-3CDS	ENST00000540605	ENST00000555528		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-3CDS	ENST00000540605	ENST00000554848		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-intron	ENST00000540605	ENST00000555458		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-intron	ENST00000540605	ENST00000554192		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-intron	ENST00000540605	ENST00000544168		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
intron-intron	ENST00000540605	ENST00000554585		TCGA	RV	PRAD	TCGA-G9-6354-01A	ZNF461	chr19	37147350	-	AKT1	chr14	105246553	-
5UTR-5UTR	ENST00000588723	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5UTR-5UTR	ENST00000588723	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5UTR-5UTR	ENST00000588723	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5UTR-5UTR	ENST00000588723	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5UTR-5UTR	ENST00000588723	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5UTR-5UTR	ENST00000588723	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000356958	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000356958	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000356958	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000356958	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000356958	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000356958	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000292841	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000292841	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000292841	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000292841	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000292841	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000292841	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000392157	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000392157	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000392157	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000392157	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000392157	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000392157	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355533	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355533	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355533	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355533	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355533	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355533	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000588354	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000588354	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000588354	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000588354	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000588354	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
intron-5UTR	ENST00000588354	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	FXYD1	chr19	35630980	+
In-frame	ENST00000374126	ENST00000580900		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
In-frame	ENST00000374126	ENST00000380172		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
In-frame	ENST00000374126	ENST00000460874		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
5CDS-3UTR	ENST00000374126	ENST00000427788		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
In-frame	ENST00000288466	ENST00000580900		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
In-frame	ENST00000288466	ENST00000380172		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
In-frame	ENST00000288466	ENST00000460874		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
5CDS-3UTR	ENST00000288466	ENST00000427788		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
intron-3CDS	ENST00000470105	ENST00000580900		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
intron-3CDS	ENST00000470105	ENST00000380172		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
intron-3CDS	ENST00000470105	ENST00000460874		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
intron-3UTR	ENST00000470105	ENST00000427788		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	ZNF618	chr9	116638693	+	MTAP	chr9	21815432	+
In-frame	ENST00000446827	ENST00000447540		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000446827	ENST00000566029		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000446827	ENST00000564845		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000446827	ENST00000398510		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5CDS-intron	ENST00000446827	ENST00000564582		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000425432	ENST00000447540		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000425432	ENST00000566029		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000425432	ENST00000564845		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000425432	ENST00000398510		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5CDS-intron	ENST00000425432	ENST00000564582		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000313565	ENST00000447540		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000313565	ENST00000566029		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000313565	ENST00000564845		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000313565	ENST00000398510		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5CDS-intron	ENST00000313565	ENST00000564582		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000564134	ENST00000447540		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000564134	ENST00000566029		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000564134	ENST00000564845		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000564134	ENST00000398510		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5CDS-intron	ENST00000564134	ENST00000564582		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000565601	ENST00000447540		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000565601	ENST00000566029		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000565601	ENST00000564845		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
In-frame	ENST00000565601	ENST00000398510		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5CDS-intron	ENST00000565601	ENST00000564582		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5UTR-3CDS	ENST00000564943	ENST00000447540		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5UTR-3CDS	ENST00000564943	ENST00000566029		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5UTR-3CDS	ENST00000564943	ENST00000564845		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5UTR-3CDS	ENST00000564943	ENST00000398510		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
5UTR-intron	ENST00000564943	ENST00000564582		TCGA	RV	PRAD	TCGA-HC-8262-01A	ZNF821	chr16	71913810	-	CHD9	chr16	53269097	+
Frame-shit	ENST00000439326	ENST00000264485		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000439326	ENST00000425175		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000439326	ENST00000351898		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000439326	ENST00000340595		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
5CDS-3UTR	ENST00000439326	ENST00000514331		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
5CDS-3UTR	ENST00000439326	ENST00000512686		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000441304	ENST00000264485		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000441304	ENST00000425175		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000441304	ENST00000351898		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
Frame-shit	ENST00000441304	ENST00000340595		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
5CDS-3UTR	ENST00000441304	ENST00000514331		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
5CDS-3UTR	ENST00000441304	ENST00000512686		TCGA	RV	PRAD	TCGA-HC-7819-01A	ZNF844	chr19	12175691	+	SLC4A4	chr4	72316905	+
5CDS-intron	ENST00000429586	ENST00000404460		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000303908		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000409158		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000403716		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000234115		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000439822		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000487980		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000438882		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000538982		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000409612		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429586	ENST00000409279		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000404460		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000303908		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000409158		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000403716		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000234115		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000439822		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000487980		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000438882		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000538982		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000409612		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292808	ENST00000409279		TCGA	RV	PRAD	TCGA-G9-6342-01A	ABCF3	chr3	183911793	+	PLEKHB2	chr2	131876464	+
In-frame	ENST00000318560	ENST00000374759		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	ABL1	chr9	133730483	+	SLC38A10	chr17	79246427	-
In-frame	ENST00000318560	ENST00000288439		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	ABL1	chr9	133730483	+	SLC38A10	chr17	79246427	-
5CDS-intron	ENST00000318560	ENST00000546352		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	ABL1	chr9	133730483	+	SLC38A10	chr17	79246427	-
In-frame	ENST00000409236	ENST00000225983		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
In-frame	ENST00000409236	ENST00000393622		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
In-frame	ENST00000409236	ENST00000336057		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
In-frame	ENST00000409236	ENST00000586802		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000356421	ENST00000225983		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000356421	ENST00000393622		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000356421	ENST00000336057		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000356421	ENST00000586802		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000317233	ENST00000225983		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000317233	ENST00000393622		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000317233	ENST00000336057		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000317233	ENST00000586802		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000409579	ENST00000225983		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000409579	ENST00000393622		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000409579	ENST00000336057		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
Frame-shit	ENST00000409579	ENST00000586802		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000483600	ENST00000225983		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000483600	ENST00000393622		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000483600	ENST00000336057		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000483600	ENST00000586802		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42171202	-
In-frame	ENST00000336665	ENST00000251582		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
5CDS-intron	ENST00000336665	ENST00000274609		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
In-frame	ENST00000304032	ENST00000251582		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
5CDS-intron	ENST00000304032	ENST00000274609		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
In-frame	ENST00000409538	ENST00000251582		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
5CDS-intron	ENST00000409538	ENST00000274609		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
In-frame	ENST00000428334	ENST00000251582		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
5CDS-intron	ENST00000428334	ENST00000274609		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
In-frame	ENST00000409457	ENST00000251582		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
5CDS-intron	ENST00000409457	ENST00000274609		TCGA	RV	PRAD	TCGA-HI-7168-01A	AGAP1	chr2	236653483	+	ADAMTS2	chr5	178553131	-
Frame-shit	ENST00000428149	ENST00000525729		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000428149	ENST00000526725		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000428149	ENST00000529391		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000428149	ENST00000393084		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-3CDS	ENST00000429370	ENST00000525729		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-intron	ENST00000429370	ENST00000526725		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-intron	ENST00000429370	ENST00000529391		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-intron	ENST00000429370	ENST00000393084		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
Frame-shit	ENST00000389568	ENST00000525729		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000389568	ENST00000526725		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000389568	ENST00000529391		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000389568	ENST00000393084		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
Frame-shit	ENST00000417449	ENST00000525729		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000417449	ENST00000526725		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000417449	ENST00000529391		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5CDS-intron	ENST00000417449	ENST00000393084		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-3CDS	ENST00000530933	ENST00000525729		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-intron	ENST00000530933	ENST00000526725		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-intron	ENST00000530933	ENST00000529391		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
intron-intron	ENST00000530933	ENST00000393084		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ALKBH8	chr11	107420479	-	C11orf65	chr11	108179798	-
5UTR-3CDS	ENST00000378330	ENST00000289746		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
5UTR-intron	ENST00000378330	ENST00000521087		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
5UTR-3CDS	ENST00000301030	ENST00000289746		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
5UTR-intron	ENST00000301030	ENST00000521087		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
intron-3CDS	ENST00000563291	ENST00000289746		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
intron-intron	ENST00000563291	ENST00000521087		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
intron-3CDS	ENST00000567736	ENST00000289746		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
intron-intron	ENST00000567736	ENST00000521087		TCGA	RV	PRAD	TCGA-M7-A725-01A	ANKRD11	chr16	89484692	-	CDH15	chr16	89253837	+
In-frame	ENST00000317133	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000317133	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000375741	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000375741	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000375739	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000375739	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000370623	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000370623	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
intron-3CDS	ENST00000544132	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
intron-intron	ENST00000544132	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000218789	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000218789	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000375736	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000375736	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000426073	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000426073	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000375737	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000375737	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000375723	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000375723	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
In-frame	ENST00000478679	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
5CDS-intron	ENST00000478679	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
3UTR-3CDS	ENST00000483189	ENST00000371953		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
3UTR-intron	ENST00000483189	ENST00000472832		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ARHGEF7	chr13	111896641	+	PTEN	chr10	89685270	+
Frame-shit	ENST00000303329	ENST00000287218		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
Frame-shit	ENST00000303329	ENST00000373391		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
5CDS-3UTR	ENST00000303329	ENST00000463847		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000533983	ENST00000287218		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000533983	ENST00000373391		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000533983	ENST00000463847		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000527771	ENST00000287218		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000527771	ENST00000373391		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000527771	ENST00000463847		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000531595	ENST00000287218		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000531595	ENST00000373391		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000531595	ENST00000463847		TCGA	RV	PRAD	TCGA-HC-7752-01A	ARNT2	chr15	80696888	+	ZFAND3	chr6	38120011	+
In-frame	ENST00000265138	ENST00000517913		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
In-frame	ENST00000265138	ENST00000435422		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
In-frame	ENST00000265138	ENST00000447401		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
In-frame	ENST00000265138	ENST00000337851		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
5UTR-3CDS	ENST00000503192	ENST00000517913		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
5UTR-3CDS	ENST00000503192	ENST00000435422		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
5UTR-3CDS	ENST00000503192	ENST00000447401		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
5UTR-3CDS	ENST00000503192	ENST00000337851		TCGA	RV	PRAD	TCGA-EJ-5542-01A	ARRDC3	chr5	90672438	-	SGCD	chr5	155771499	+
5CDS-intron	ENST00000541428	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
5CDS-intron	ENST00000379454	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000523897	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000522919	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000356457	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000518068	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000517903	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000445642	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000517847	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000522835	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000517856	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000389204	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000522603	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000379449	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
intron-intron	ENST00000517661	ENST00000220676		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	ASPH	chr8	62430087	-	RP1	chr8	55619003	+
In-frame	ENST00000435504	ENST00000400485		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
5CDS-3UTR	ENST00000435504	ENST00000487909		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
5UTR-3CDS	ENST00000336112	ENST00000400485		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
5UTR-3UTR	ENST00000336112	ENST00000487909		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
5UTR-3CDS	ENST00000272341	ENST00000400485		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
5UTR-3UTR	ENST00000272341	ENST00000487909		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
intron-3CDS	ENST00000404843	ENST00000400485		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
intron-3UTR	ENST00000404843	ENST00000487909		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
intron-3CDS	ENST00000497092	ENST00000400485		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
intron-3UTR	ENST00000497092	ENST00000487909		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	ASXL2	chr2	26101035	-	MORC3	chr21	37744672	+
Frame-shit	ENST00000369762	ENST00000280326		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000369762	ENST00000503026		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000369762	ENST00000515390		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000369762	ENST00000515676		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000369762	ENST00000506600		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000484908	ENST00000280326		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
intron-intron	ENST00000484908	ENST00000503026		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
intron-intron	ENST00000484908	ENST00000515390		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
intron-intron	ENST00000484908	ENST00000515676		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
intron-intron	ENST00000484908	ENST00000506600		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	ATP6AP1	chrX	153664862	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000311637	ENST00000451813		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000311637	ENST00000252015		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000311637	ENST00000539834		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000311637	ENST00000432634		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000338821	ENST00000451813		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000338821	ENST00000252015		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000338821	ENST00000539834		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000338821	ENST00000432634		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000402822	ENST00000451813		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
Frame-shit	ENST00000402822	ENST00000252015		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000402822	ENST00000539834		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
5CDS-intron	ENST00000402822	ENST00000432634		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000477492	ENST00000451813		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
intron-3CDS	ENST00000477492	ENST00000252015		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000477492	ENST00000539834		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000477492	ENST00000432634		TCGA	RV	PRAD	TCGA-EJ-5514-01A	ATP9A	chr20	50384841	-	TRPC4AP	chr20	33623111	-
intron-intron	ENST00000223642	ENST00000339861		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000223642	ENST00000420987		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000223642	ENST00000455551		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000223642	ENST00000343780		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000223642	ENST00000450295		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000223642	ENST00000438547		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000223642	ENST00000356444		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000223642	ENST00000422704		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000223642	ENST00000420101		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000223642	ENST00000469653		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000466280	ENST00000339861		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000466280	ENST00000420987		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000466280	ENST00000455551		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000466280	ENST00000343780		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000466280	ENST00000450295		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000466280	ENST00000438547		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000466280	ENST00000356444		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-5UTR	ENST00000466280	ENST00000422704		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000466280	ENST00000420101		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
intron-intron	ENST00000466280	ENST00000469653		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	C5	chr9	123837032	-	SEMA4D	chr9	92070868	-
Frame-shit	ENST00000383699	ENST00000464233		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000383699	ENST00000436010		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000383699	ENST00000495273		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000383699	ENST00000467549		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
5CDS-intron	ENST00000383699	ENST00000466906		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000407528	ENST00000464233		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000407528	ENST00000436010		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000407528	ENST00000495273		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
Frame-shit	ENST00000407528	ENST00000467549		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
5CDS-intron	ENST00000407528	ENST00000466906		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
intron-3CDS	ENST00000405615	ENST00000464233		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
intron-3CDS	ENST00000405615	ENST00000436010		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
intron-3CDS	ENST00000405615	ENST00000495273		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
intron-3CDS	ENST00000405615	ENST00000467549		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
intron-intron	ENST00000405615	ENST00000466906		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
3UTR-3CDS	ENST00000485126	ENST00000464233		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
3UTR-3CDS	ENST00000485126	ENST00000436010		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
3UTR-3CDS	ENST00000485126	ENST00000495273		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
3UTR-3CDS	ENST00000485126	ENST00000467549		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
3UTR-intron	ENST00000485126	ENST00000466906		TCGA	RV	PRAD	TCGA-EJ-7791-01A	CADM2	chr3	85008819	+	ROBO1	chr3	78676719	-
intron-intron	ENST00000401084	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000401084	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000264203	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000375142	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000433834	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000264202	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
intron-intron	ENST00000482808	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000530157		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000525451		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000308162		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000527344		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000531407		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000524553		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000534769		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
5CDS-intron	ENST00000375144	ENST00000531413		TCGA	RV	PRAD	TCGA-HC-8265-01A	CAPZB	chr1	19665273	-	CFL1	chr11	65629059	-
In-frame	ENST00000264033	ENST00000292174		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	CBL	chr11	119103405	+	CXCR5	chr11	118764305	+
Frame-shit	ENST00000355690	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000355690	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000304361	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000304361	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000434319	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000434319	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000350667	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000350667	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	CLEC12A	chr12	10124286	+	CLEC2A	chr12	10069402	-
Frame-shit	ENST00000377298	ENST00000455833		TCGA	RV	PRAD	TCGA-HC-7080-01A	CLSTN1	chr1	9883701	-	IFFO2	chr1	19247615	-
Frame-shit	ENST00000361311	ENST00000455833		TCGA	RV	PRAD	TCGA-HC-7080-01A	CLSTN1	chr1	9883701	-	IFFO2	chr1	19247615	-
Frame-shit	ENST00000377288	ENST00000455833		TCGA	RV	PRAD	TCGA-HC-7080-01A	CLSTN1	chr1	9883701	-	IFFO2	chr1	19247615	-
intron-3CDS	ENST00000477264	ENST00000455833		TCGA	RV	PRAD	TCGA-HC-7080-01A	CLSTN1	chr1	9883701	-	IFFO2	chr1	19247615	-
5CDS-5UTR	ENST00000330687	ENST00000242810		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
5CDS-5UTR	ENST00000330687	ENST00000454652		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000330687	ENST00000476808		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
5CDS-intron	ENST00000330687	ENST00000461813		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-5UTR	ENST00000394106	ENST00000242810		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-5UTR	ENST00000394106	ENST00000454652		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-intron	ENST00000394106	ENST00000476808		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-intron	ENST00000394106	ENST00000461813		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-5UTR	ENST00000563952	ENST00000242810		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-5UTR	ENST00000563952	ENST00000454652		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-intron	ENST00000563952	ENST00000476808		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-intron	ENST00000563952	ENST00000461813		TCGA	RV	PRAD	TCGA-HC-7818-01A	CMTM4	chr16	66655965	-	KLHL24	chr3	183361268	+
intron-3CDS	ENST00000375458	ENST00000409634		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000375458	ENST00000333129		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000375458	ENST00000482917		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000342193	ENST00000409634		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000342193	ENST00000333129		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000342193	ENST00000482917		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000409184	ENST00000409634		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000409184	ENST00000333129		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000409184	ENST00000482917		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000392717	ENST00000409634		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000392717	ENST00000333129		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000392717	ENST00000482917		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000194871	ENST00000409634		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000194871	ENST00000333129		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000194871	ENST00000482917		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000491126	ENST00000409634		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000491126	ENST00000333129		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
intron-intron	ENST00000491126	ENST00000482917		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165693938	-	FIGN	chr2	164450306	-
5CDS-5UTR	ENST00000347053	ENST00000444614		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-5UTR	ENST00000347053	ENST00000476570		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-intron	ENST00000347053	ENST00000281508		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-5UTR	ENST00000297135	ENST00000444614		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-5UTR	ENST00000297135	ENST00000476570		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-intron	ENST00000297135	ENST00000281508		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-5UTR	ENST00000393603	ENST00000444614		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-5UTR	ENST00000393603	ENST00000476570		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-intron	ENST00000393603	ENST00000281508		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5UTR-5UTR	ENST00000475638	ENST00000444614		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5UTR-5UTR	ENST00000475638	ENST00000476570		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5UTR-intron	ENST00000475638	ENST00000281508		TCGA	RV	PRAD	TCGA-EJ-5510-01A	COG5	chr7	107052947	-	CCDC122	chr13	44449063	-
5CDS-3UTR	ENST00000300527	ENST00000318789		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000300527	ENST00000475937		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000493089		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000484350		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000318779		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000491238		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000498215		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000468577		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000300527	ENST00000472382		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000310645	ENST00000318789		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000310645	ENST00000475937		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000493089		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000484350		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000318779		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000491238		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000498215		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000468577		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000310645	ENST00000472382		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000357838	ENST00000318789		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000357838	ENST00000475937		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000493089		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000484350		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000318779		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000491238		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000498215		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000468577		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000357838	ENST00000472382		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409416	ENST00000318789		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409416	ENST00000475937		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000493089		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000484350		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000318779		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000491238		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000498215		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000468577		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409416	ENST00000472382		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000397763	ENST00000318789		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000397763	ENST00000475937		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000493089		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000484350		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000318779		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000491238		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000498215		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000468577		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000397763	ENST00000472382		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000460886	ENST00000318789		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000460886	ENST00000475937		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000493089		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000484350		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000318779		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000491238		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000498215		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000468577		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000460886	ENST00000472382		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	COL6A2	chr21	47552763	+	FOXP1	chr3	71007472	-
intron-5UTR	ENST00000343933	ENST00000526005		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
intron-5UTR	ENST00000343933	ENST00000533290		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
intron-5UTR	ENST00000343933	ENST00000395288		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
intron-5UTR	ENST00000343933	ENST00000430070		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
intron-5UTR	ENST00000343933	ENST00000525720		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
intron-3UTR	ENST00000343933	ENST00000450908		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
5UTR-5UTR	ENST00000375077	ENST00000526005		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
5UTR-5UTR	ENST00000375077	ENST00000533290		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
5UTR-5UTR	ENST00000375077	ENST00000395288		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
5UTR-5UTR	ENST00000375077	ENST00000430070		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
5UTR-5UTR	ENST00000375077	ENST00000525720		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
5UTR-3UTR	ENST00000375077	ENST00000450908		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	CORO2A	chr9	100954841	-	KBTBD4	chr11	47599580	-
Frame-shit	ENST00000393094	ENST00000524381		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000393094	ENST00000529038		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000393094	ENST00000331898		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000393094	ENST00000374778		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
5CDS-5UTR	ENST00000393094	ENST00000541867		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
intron-3CDS	ENST00000531843	ENST00000524381		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000531843	ENST00000529038		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000531843	ENST00000331898		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000531843	ENST00000374778		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
intron-5UTR	ENST00000531843	ENST00000541867		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CUL5	chr11	107880098	+	OPCML	chr11	132307253	-
5UTR-intron	ENST00000569418	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000569418	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000569418	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000569418	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000569418	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000569418	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000569418	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000569418	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000569418	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000569418	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000540145	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000540145	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000540145	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000540145	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000540145	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000540145	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000540145	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000540145	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000540145	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000540145	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000311559	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000311559	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000311559	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000311559	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000311559	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000311559	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000311559	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000311559	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000311559	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000311559	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000564326	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000564326	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000564326	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000564326	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000564326	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000564326	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000564326	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000564326	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000564326	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000564326	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000566206	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000566206	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000566206	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000566206	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000566206	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000566206	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000566206	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000566206	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000566206	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000566206	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000398568	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000398568	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000398568	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000398568	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000398568	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000398568	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000398568	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000398568	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000398568	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000398568	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000427738	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000427738	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000427738	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000427738	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000427738	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000427738	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000427738	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000427738	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-intron	ENST00000427738	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5UTR-5UTR	ENST00000427738	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000568704	ENST00000519824		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000568704	ENST00000522746		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000568704	ENST00000523509		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000568704	ENST00000401979		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000568704	ENST00000519110		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000568704	ENST00000522250		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000568704	ENST00000517654		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000568704	ENST00000519540		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-intron	ENST00000568704	ENST00000522941		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
intron-5UTR	ENST00000568704	ENST00000518879		TCGA	RV	PRAD	TCGA-VP-A87D-01A	CYLD	chr16	50776752	+	FAM49B	chr8	130983241	-
5CDS-intron	ENST00000275016	ENST00000474476		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000275016	ENST00000371218		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000275016	ENST00000303721		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000275016	ENST00000371212		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000275016	ENST00000371210		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
intron-intron	ENST00000489657	ENST00000474476		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
intron-intron	ENST00000489657	ENST00000371218		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
intron-intron	ENST00000489657	ENST00000303721		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
intron-intron	ENST00000489657	ENST00000371212		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
intron-intron	ENST00000489657	ENST00000371210		TCGA	RV	PRAD	TCGA-EJ-8468-01A	CYP39A1	chr6	46609900	-	FGGY	chr1	60223603	+
Frame-shit	ENST00000264161	ENST00000409968		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
Frame-shit	ENST00000264161	ENST00000272643		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
Frame-shit	ENST00000264161	ENST00000413152		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
5CDS-intron	ENST00000264161	ENST00000543459		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
5CDS-intron	ENST00000264161	ENST00000485379		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
Frame-shit	ENST00000537273	ENST00000409968		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
Frame-shit	ENST00000537273	ENST00000272643		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
Frame-shit	ENST00000537273	ENST00000413152		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
5CDS-intron	ENST00000537273	ENST00000543459		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
5CDS-intron	ENST00000537273	ENST00000485379		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
intron-3CDS	ENST00000463008	ENST00000409968		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
intron-3CDS	ENST00000463008	ENST00000272643		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
intron-3CDS	ENST00000463008	ENST00000413152		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
intron-intron	ENST00000463008	ENST00000543459		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
intron-intron	ENST00000463008	ENST00000485379		TCGA	RV	PRAD	TCGA-HC-7210-01A	DARS	chr2	136690353	-	THSD7B	chr2	138163183	+
5UTR-3CDS	ENST00000308025	ENST00000294868		TCGA	RV	PRAD	TCGA-M7-A720-01A	DDX23	chr12	49245867	-	NMNAT2	chr1	183262928	-
5UTR-3CDS	ENST00000308025	ENST00000287713		TCGA	RV	PRAD	TCGA-M7-A720-01A	DDX23	chr12	49245867	-	NMNAT2	chr1	183262928	-
5UTR-intron	ENST00000308025	ENST00000473046		TCGA	RV	PRAD	TCGA-M7-A720-01A	DDX23	chr12	49245867	-	NMNAT2	chr1	183262928	-
5UTR-3CDS	ENST00000553182	ENST00000294868		TCGA	RV	PRAD	TCGA-M7-A720-01A	DDX23	chr12	49245867	-	NMNAT2	chr1	183262928	-
5UTR-3CDS	ENST00000553182	ENST00000287713		TCGA	RV	PRAD	TCGA-M7-A720-01A	DDX23	chr12	49245867	-	NMNAT2	chr1	183262928	-
5UTR-intron	ENST00000553182	ENST00000473046		TCGA	RV	PRAD	TCGA-M7-A720-01A	DDX23	chr12	49245867	-	NMNAT2	chr1	183262928	-
5CDS-5UTR	ENST00000366991	ENST00000469606		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000366994		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000366993		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000366992		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000440600		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000469606		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000366994		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000366993		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000366992		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000440600		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000469606		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000366994		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000366993		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000366992		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000440600		TCGA	RV	PRAD	TCGA-CH-5752-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-intron	ENST00000239223	ENST00000280653		TCGA	RV	PRAD	TCGA-QU-A6IO-01A	DUSP1	chr5	172195093	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000239223	ENST00000471841		TCGA	RV	PRAD	TCGA-QU-A6IO-01A	DUSP1	chr5	172195093	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000239223	ENST00000263969		TCGA	RV	PRAD	TCGA-QU-A6IO-01A	DUSP1	chr5	172195093	-	MFN1	chr3	179096011	+
5UTR-3CDS	ENST00000442713	ENST00000285093		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-5UTR	ENST00000442713	ENST00000589432		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-5UTR	ENST00000442713	ENST00000587994		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-3CDS	ENST00000269445	ENST00000285093		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-5UTR	ENST00000269445	ENST00000589432		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-5UTR	ENST00000269445	ENST00000587994		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-3CDS	ENST00000584977	ENST00000285093		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-5UTR	ENST00000584977	ENST00000589432		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
5UTR-5UTR	ENST00000584977	ENST00000587994		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
intron-3CDS	ENST00000578396	ENST00000285093		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
intron-5UTR	ENST00000578396	ENST00000589432		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
intron-5UTR	ENST00000578396	ENST00000587994		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	DYM	chr18	46986768	-	ACAA2	chr18	47329223	-
Frame-shit	ENST00000426333	ENST00000394947		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
In-frame	ENST00000426333	ENST00000360439		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000426333	ENST00000394949		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
5CDS-intron	ENST00000426333	ENST00000567289		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000592576	ENST00000394947		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
In-frame	ENST00000592576	ENST00000360439		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000592576	ENST00000394949		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
5CDS-intron	ENST00000592576	ENST00000567289		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000591382	ENST00000394947		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000591382	ENST00000360439		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
In-frame	ENST00000591382	ENST00000394949		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
5CDS-intron	ENST00000591382	ENST00000567289		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000402521	ENST00000394947		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000402521	ENST00000360439		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
In-frame	ENST00000402521	ENST00000394949		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
5CDS-intron	ENST00000402521	ENST00000567289		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
intron-3CDS	ENST00000589211	ENST00000394947		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
intron-3CDS	ENST00000589211	ENST00000360439		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
intron-3CDS	ENST00000589211	ENST00000394949		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
intron-intron	ENST00000589211	ENST00000567289		TCGA	RV	PRAD	TCGA-J4-A67M-01A	EFTUD2	chr17	42931637	-	SIN3A	chr15	75664550	-
Frame-shit	ENST00000370935	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000370935	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000370935	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5CDS-intron	ENST00000370935	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000394363	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000394363	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000394363	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5CDS-intron	ENST00000394363	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
In-frame	ENST00000338144	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
In-frame	ENST00000338144	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
In-frame	ENST00000338144	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5CDS-intron	ENST00000338144	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5UTR-3CDS	ENST00000492263	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5UTR-3CDS	ENST00000492263	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5UTR-3CDS	ENST00000492263	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5UTR-intron	ENST00000492263	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000370927	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000370927	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
Frame-shit	ENST00000370927	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5CDS-intron	ENST00000370927	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7736-01A	ENOX2	chrX	129837094	-	SMARCA1	chrX	128605303	-
5UTR-3CDS	ENST00000268933	ENST00000370250		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
5UTR-3CDS	ENST00000268933	ENST00000517724		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
5UTR-3CDS	ENST00000268933	ENST00000210633		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
5UTR-3UTR	ENST00000268933	ENST00000519756		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
3UTR-3CDS	ENST00000515028	ENST00000370250		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
3UTR-3CDS	ENST00000515028	ENST00000517724		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
3UTR-3CDS	ENST00000515028	ENST00000210633		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
3UTR-3UTR	ENST00000515028	ENST00000519756		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
intron-3CDS	ENST00000541226	ENST00000370250		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
intron-3CDS	ENST00000541226	ENST00000517724		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
intron-3CDS	ENST00000541226	ENST00000210633		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
intron-3UTR	ENST00000541226	ENST00000519756		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
In-frame	ENST00000537145	ENST00000370250		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
In-frame	ENST00000537145	ENST00000517724		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
In-frame	ENST00000537145	ENST00000210633		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
5CDS-3UTR	ENST00000537145	ENST00000519756		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	EPN3	chr17	48610346	+	SEMA4G	chr10	102733304	+
intron-3CDS	ENST00000398907	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000398907	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000398907	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-3CDS	ENST00000398905	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000398905	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000398905	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-3CDS	ENST00000288319	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000288319	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000288319	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5UTR-3CDS	ENST00000398897	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5UTR-intron	ENST00000398897	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5UTR-intron	ENST00000398897	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
In-frame	ENST00000398911	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000398911	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000398911	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
Frame-shit	ENST00000398910	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000398910	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000398910	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
Frame-shit	ENST00000417133	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000417133	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000417133	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
Frame-shit	ENST00000442448	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000442448	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000442448	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-3CDS	ENST00000453032	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000453032	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000453032	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
In-frame	ENST00000398919	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000398919	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5CDS-intron	ENST00000398919	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-3CDS	ENST00000429727	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000429727	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-intron	ENST00000429727	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5UTR-3CDS	ENST00000485493	ENST00000329153		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5UTR-intron	ENST00000485493	ENST00000417684		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
5UTR-intron	ENST00000485493	ENST00000559832		TCGA	RV	PRAD	TCGA-CH-5739-01A	ERG	chr21	39947586	-	PLEKHH1	chr14	68022542	+
intron-3CDS	ENST00000398907	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398907	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398907	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398907	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398907	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-intron	ENST00000398907	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398905	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398905	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398905	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398905	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398905	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-intron	ENST00000398905	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000288319	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000288319	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000288319	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000288319	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000288319	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-intron	ENST00000288319	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000398897	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000398897	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000398897	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000398897	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000398897	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-intron	ENST00000398897	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398911	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398911	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398911	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398911	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398911	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5CDS-intron	ENST00000398911	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398910	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398910	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398910	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398910	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398910	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5CDS-intron	ENST00000398910	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000417133	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000417133	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000417133	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000417133	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000417133	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5CDS-intron	ENST00000417133	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000442448	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000442448	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000442448	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000442448	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000442448	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5CDS-intron	ENST00000442448	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000453032	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000453032	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000453032	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000453032	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000453032	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-intron	ENST00000453032	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398919	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398919	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398919	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398919	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
Frame-shit	ENST00000398919	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5CDS-intron	ENST00000398919	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000429727	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000429727	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000429727	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000429727	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000429727	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-intron	ENST00000429727	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000485493	ENST00000356577		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000485493	ENST00000290239		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000485493	ENST00000381692		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000485493	ENST00000300278		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000485493	ENST00000381679		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
5UTR-intron	ENST00000485493	ENST00000470533		TCGA	RV	PRAD	TCGA-HC-7230-01A	ERG	chr21	39947586	-	SON	chr21	34918519	+
intron-3CDS	ENST00000398907	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398907	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398907	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398907	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398907	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398907	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3UTR	ENST00000398907	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000398907	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000398907	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398905	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398905	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398905	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398905	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398905	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000398905	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3UTR	ENST00000398905	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000398905	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000398905	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000288319	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000288319	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000288319	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000288319	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000288319	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000288319	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3UTR	ENST00000288319	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000288319	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000288319	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000398897	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000398897	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000398897	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000398897	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000398897	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000398897	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3UTR	ENST00000398897	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-5UTR	ENST00000398897	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-5UTR	ENST00000398897	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398911	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398911	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398911	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398911	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398911	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398911	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-3UTR	ENST00000398911	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000398911	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000398911	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000398910	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000398910	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000398910	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000398910	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000398910	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000398910	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-3UTR	ENST00000398910	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000398910	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000398910	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000417133	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000417133	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000417133	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000417133	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000417133	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000417133	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-3UTR	ENST00000417133	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000417133	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000417133	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000442448	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000442448	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000442448	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000442448	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000442448	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
Frame-shit	ENST00000442448	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-3UTR	ENST00000442448	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000442448	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000442448	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000453032	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000453032	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000453032	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000453032	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000453032	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000453032	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3UTR	ENST00000453032	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000453032	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000453032	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398919	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398919	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398919	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398919	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398919	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000398919	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-3UTR	ENST00000398919	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000398919	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5CDS-5UTR	ENST00000398919	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000429727	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000429727	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000429727	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000429727	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000429727	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3CDS	ENST00000429727	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-3UTR	ENST00000429727	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000429727	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
intron-5UTR	ENST00000429727	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000485493	ENST00000372978		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000485493	ENST00000494547		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000485493	ENST00000456846		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000485493	ENST00000372982		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000485493	ENST00000472818		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3CDS	ENST00000485493	ENST00000372977		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-3UTR	ENST00000485493	ENST00000482926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-5UTR	ENST00000485493	ENST00000465926		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
5UTR-5UTR	ENST00000485493	ENST00000482432		TCGA	RV	PRAD	TCGA-EJ-7797-01A	ERG	chr21	39947586	-	TAF8	chr6	42019095	+
In-frame	ENST00000378204	ENST00000409003		TCGA	RV	PRAD	TCGA-EJ-7123-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000314727		TCGA	RV	PRAD	TCGA-EJ-7123-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	PRAD	TCGA-EJ-7123-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
In-frame	ENST00000265299	ENST00000309930		TCGA	RV	PRAD	TCGA-EJ-7218-01B	FAM188B	chr7	30811172	+	C7orf10	chr7	40789033	+
In-frame	ENST00000265299	ENST00000401647		TCGA	RV	PRAD	TCGA-EJ-7218-01B	FAM188B	chr7	30811172	+	C7orf10	chr7	40789033	+
In-frame	ENST00000265299	ENST00000335693		TCGA	RV	PRAD	TCGA-EJ-7218-01B	FAM188B	chr7	30811172	+	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000265299	ENST00000464028		TCGA	RV	PRAD	TCGA-EJ-7218-01B	FAM188B	chr7	30811172	+	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000265299	ENST00000540834		TCGA	RV	PRAD	TCGA-EJ-7218-01B	FAM188B	chr7	30811172	+	C7orf10	chr7	40789033	+
In-frame	ENST00000370791	ENST00000374820		TCGA	RV	PRAD	TCGA-EJ-7792-01A	FAM73A	chr1	78249036	+	PIGU	chr20	33225789	-
In-frame	ENST00000370791	ENST00000452740		TCGA	RV	PRAD	TCGA-EJ-7792-01A	FAM73A	chr1	78249036	+	PIGU	chr20	33225789	-
5CDS-intron	ENST00000370791	ENST00000480175		TCGA	RV	PRAD	TCGA-EJ-7792-01A	FAM73A	chr1	78249036	+	PIGU	chr20	33225789	-
intron-3CDS	ENST00000443751	ENST00000374820		TCGA	RV	PRAD	TCGA-EJ-7792-01A	FAM73A	chr1	78249036	+	PIGU	chr20	33225789	-
intron-3CDS	ENST00000443751	ENST00000452740		TCGA	RV	PRAD	TCGA-EJ-7792-01A	FAM73A	chr1	78249036	+	PIGU	chr20	33225789	-
intron-intron	ENST00000443751	ENST00000480175		TCGA	RV	PRAD	TCGA-EJ-7792-01A	FAM73A	chr1	78249036	+	PIGU	chr20	33225789	-
In-frame	ENST00000345097	ENST00000155840		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
In-frame	ENST00000345097	ENST00000335475		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5CDS-intron	ENST00000345097	ENST00000526095		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
Frame-shit	ENST00000261302	ENST00000155840		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
Frame-shit	ENST00000261302	ENST00000335475		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5CDS-intron	ENST00000261302	ENST00000526095		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
Frame-shit	ENST00000557258	ENST00000155840		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
Frame-shit	ENST00000557258	ENST00000335475		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5CDS-intron	ENST00000557258	ENST00000526095		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
In-frame	ENST00000555353	ENST00000155840		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
In-frame	ENST00000555353	ENST00000335475		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5CDS-intron	ENST00000555353	ENST00000526095		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5UTR-3CDS	ENST00000555658	ENST00000155840		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5UTR-3CDS	ENST00000555658	ENST00000335475		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5UTR-intron	ENST00000555658	ENST00000526095		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	FOXN3	chr14	89747294	-	KCNQ1	chr11	2790074	+
5UTR-intron	ENST00000318789	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318789	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318789	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318789	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318789	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000475937	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000475937	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000475937	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000475937	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000475937	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000493089	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000493089	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000493089	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000493089	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000493089	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000484350	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000484350	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000484350	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000484350	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000484350	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318779	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318779	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318779	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318779	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
5UTR-intron	ENST00000318779	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000491238	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000491238	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000491238	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000491238	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000491238	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000498215	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000498215	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000498215	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000498215	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000498215	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000468577	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000468577	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000468577	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000468577	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000468577	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000472382	ENST00000377776		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000472382	ENST00000256001		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000472382	ENST00000397282		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000472382	ENST00000537264		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
intron-intron	ENST00000472382	ENST00000488782		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	FOXP1	chr3	71408301	-	ACTR3B	chr7	152549211	+
In-frame	ENST00000265000	ENST00000513335		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
In-frame	ENST00000265000	ENST00000398886		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
In-frame	ENST00000265000	ENST00000325106		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
5CDS-5UTR	ENST00000265000	ENST00000506019		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
In-frame	ENST00000512285	ENST00000513335		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
In-frame	ENST00000512285	ENST00000398886		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
In-frame	ENST00000512285	ENST00000325106		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
5CDS-5UTR	ENST00000512285	ENST00000506019		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
3UTR-3CDS	ENST00000502407	ENST00000513335		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
3UTR-3CDS	ENST00000502407	ENST00000398886		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
3UTR-3CDS	ENST00000502407	ENST00000325106		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
3UTR-5UTR	ENST00000502407	ENST00000506019		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GALNT7	chr4	174216677	+	TTC29	chr4	147724837	-
Frame-shit	ENST00000366647	ENST00000258229		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366647	ENST00000344698		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366647	ENST00000488780		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366647	ENST00000520463		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366647	ENST00000430153		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
Frame-shit	ENST00000366646	ENST00000258229		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366646	ENST00000344698		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366646	ENST00000488780		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366646	ENST00000520463		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
5CDS-intron	ENST00000366646	ENST00000430153		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
intron-3CDS	ENST00000469332	ENST00000258229		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
intron-intron	ENST00000469332	ENST00000344698		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
intron-intron	ENST00000469332	ENST00000488780		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
intron-intron	ENST00000469332	ENST00000520463		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
intron-intron	ENST00000469332	ENST00000430153		TCGA	RV	PRAD	TCGA-EJ-5499-01A	GNPAT	chr1	231403649	+	PCNXL2	chr1	233353930	-
In-frame	ENST00000513454	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000513454	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000513454	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000513454	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000311337	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000311337	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000311337	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000311337	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000458112	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000458112	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000458112	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000458112	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000500692	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000500692	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000500692	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000500692	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000508177	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000508177	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000508177	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000508177	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000503794	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000503794	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000503794	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000503794	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000542860	ENST00000369485		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000542860	ENST00000265607		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000542860	ENST00000538899		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
In-frame	ENST00000542860	ENST00000369475		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GNPDA1	chr5	141384497	-	RNGTT	chr6	89616159	-
Frame-shit	ENST00000437809	ENST00000368376		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000437809	ENST00000316721		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000437809	ENST00000609421		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5CDS-intron	ENST00000437809	ENST00000495589		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000368331	ENST00000368376		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000368331	ENST00000316721		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000368331	ENST00000609421		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5CDS-intron	ENST00000368331	ENST00000495589		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000271883	ENST00000368376		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000271883	ENST00000316721		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000271883	ENST00000609421		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5CDS-intron	ENST00000271883	ENST00000495589		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000361040	ENST00000368376		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000361040	ENST00000316721		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
Frame-shit	ENST00000361040	ENST00000609421		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5CDS-intron	ENST00000361040	ENST00000495589		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5UTR-3CDS	ENST00000471341	ENST00000368376		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5UTR-3CDS	ENST00000471341	ENST00000316721		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5UTR-3CDS	ENST00000471341	ENST00000609421		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
5UTR-intron	ENST00000471341	ENST00000495589		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GON4L	chr1	155785596	-	MTX1	chr1	155180137	+
In-frame	ENST00000222330	ENST00000339282		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	GSK3A	chr19	42744107	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000222330	ENST00000416136		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	GSK3A	chr19	42744107	-	ZNF564	chr19	12639510	-
In-frame	ENST00000398249	ENST00000339282		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	GSK3A	chr19	42744107	-	ZNF564	chr19	12639510	-
5CDS-intron	ENST00000398249	ENST00000416136		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	GSK3A	chr19	42744107	-	ZNF564	chr19	12639510	-
Frame-shit	ENST00000264235	ENST00000273371		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000264235	ENST00000488919		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000264235	ENST00000495992		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000264235	ENST00000494440		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000316626	ENST00000273371		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000316626	ENST00000488919		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000316626	ENST00000495992		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000316626	ENST00000494440		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
intron-3CDS	ENST00000473886	ENST00000273371		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
intron-3CDS	ENST00000473886	ENST00000488919		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
intron-3CDS	ENST00000473886	ENST00000495992		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
intron-3CDS	ENST00000473886	ENST00000494440		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GSK3B	chr3	119624602	-	PLA1A	chr3	119347548	+
Frame-shit	ENST00000264235	ENST00000361136		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000264235	ENST00000361875		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
5CDS-intron	ENST00000264235	ENST00000492828		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000316626	ENST00000361136		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
Frame-shit	ENST00000316626	ENST00000361875		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
5CDS-intron	ENST00000316626	ENST00000492828		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000473886	ENST00000361136		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000473886	ENST00000361875		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
intron-intron	ENST00000473886	ENST00000492828		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	GSK3B	chr3	119624602	-	TSC22D2	chr3	150174863	+
intron-3CDS	ENST00000391976	ENST00000468888		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391976	ENST00000399362		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391976	ENST00000539981		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391976	ENST00000359576		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391976	ENST00000307312		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391976	ENST00000480013		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391976	ENST00000461133		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391976	ENST00000313350		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391976	ENST00000487200		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391976	ENST00000333778		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391976	ENST00000482896		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000468888		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000399362		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000539981		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000359576		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000307312		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000480013		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000310931	ENST00000461133		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000310931	ENST00000313350		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000310931	ENST00000487200		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000310931	ENST00000333778		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000310931	ENST00000482896		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000468888		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000399362		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000539981		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000359576		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000307312		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000480013		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000391975	ENST00000461133		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391975	ENST00000313350		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391975	ENST00000487200		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391975	ENST00000333778		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000391975	ENST00000482896		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000468888		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000399362		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000539981		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000359576		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000307312		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000480013		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
In-frame	ENST00000427183	ENST00000461133		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000427183	ENST00000313350		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000427183	ENST00000487200		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000427183	ENST00000333778		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000427183	ENST00000482896		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000468888		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000399362		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000539981		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000359576		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000307312		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000480013		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000476807	ENST00000461133		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476807	ENST00000313350		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476807	ENST00000487200		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476807	ENST00000333778		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000476807	ENST00000482896		TCGA	RV	PRAD	TCGA-HC-7210-01A	HDLBP	chr2	242168637	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000391976	ENST00000484427		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000391976	ENST00000371764		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000310931	ENST00000484427		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000310931	ENST00000371764		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-intron	ENST00000391975	ENST00000484427		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-intron	ENST00000391975	ENST00000371764		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-intron	ENST00000427183	ENST00000484427		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-intron	ENST00000427183	ENST00000371764		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-intron	ENST00000476807	ENST00000484427		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-intron	ENST00000476807	ENST00000371764		TCGA	RV	PRAD	TCGA-EJ-5503-01A	HDLBP	chr2	242168627	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000360289	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000360289	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000360289	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000360289	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000448642	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000448642	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000448642	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000448642	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000404387	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000404387	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000404387	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000404387	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000298649	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000298649	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000298649	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000298649	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
In-frame	ENST00000359426	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
In-frame	ENST00000359426	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000359426	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
5CDS-intron	ENST00000359426	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000494253	ENST00000433211		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-3CDS	ENST00000494253	ENST00000373744		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000494253	ENST00000545309		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
intron-intron	ENST00000494253	ENST00000373735		TCGA	RV	PRAD	TCGA-EJ-8469-01A	HK1	chr10	71078766	+	CTNNA3	chr10	68535282	-
5UTR-3CDS	ENST00000591471	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5UTR-3CDS	ENST00000591471	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5UTR-intron	ENST00000591471	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
intron-3CDS	ENST00000589218	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
intron-3CDS	ENST00000589218	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
intron-intron	ENST00000589218	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5UTR-3CDS	ENST00000544914	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5UTR-3CDS	ENST00000544914	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5UTR-intron	ENST00000544914	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000591417	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000591417	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000591417	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000592168	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000592168	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000592168	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000392153	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000392153	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000392153	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000589392	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000589392	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000589392	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000324411	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000324411	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000324411	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000591259	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000591259	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000591259	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000541583	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000541583	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000541583	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000591134	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000591134	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000591134	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000586897	ENST00000262093		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
Frame-shit	ENST00000586897	ENST00000382873		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-intron	ENST00000586897	ENST00000585699		TCGA	RV	PRAD	TCGA-EJ-5514-01A	HKR1	chr19	37838774	+	FECH	chr18	55218606	-
5CDS-5UTR	ENST00000420083	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000420083	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000420083	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000420083	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000420083	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000420083	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000420083	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000420083	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000420083	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000449870	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000449870	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000449870	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000449870	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000449870	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000449870	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000449870	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000449870	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000449870	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000318511	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000318511	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000318511	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000318511	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000318511	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000318511	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000318511	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000318511	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000318511	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000407004	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000407004	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000407004	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000407004	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000407004	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000407004	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000407004	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000407004	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000407004	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000589998	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000589998	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000589998	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000589998	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000589998	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000589998	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000589998	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000589998	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000589998	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000250241	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000250241	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000250241	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000250241	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000250241	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000250241	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000250241	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000250241	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000250241	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000592763	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000592763	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000592763	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000592763	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000592763	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000592763	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000592763	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000592763	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000592763	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000588657	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000588657	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000588657	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000588657	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000588657	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000588657	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000588657	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000588657	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000588657	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000590261	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000590261	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000590261	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-3UTR	ENST00000590261	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000590261	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-5UTR	ENST00000590261	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000590261	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000590261	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
5CDS-intron	ENST00000590261	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-5UTR	ENST00000586544	ENST00000446085		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-5UTR	ENST00000586544	ENST00000541595		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-5UTR	ENST00000586544	ENST00000602738		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-3UTR	ENST00000586544	ENST00000605471		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-5UTR	ENST00000586544	ENST00000602856		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-5UTR	ENST00000586544	ENST00000343499		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-intron	ENST00000586544	ENST00000589262		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-intron	ENST00000586544	ENST00000434737		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
intron-intron	ENST00000586544	ENST00000590616		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	ILF3	chr19	10782211	+	ZNF177	chr19	9486992	+
In-frame	ENST00000404767	ENST00000265857		TCGA	RV	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	GET4	chr7	930565	+
In-frame	ENST00000404767	ENST00000407192		TCGA	RV	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	GET4	chr7	930565	+
In-frame	ENST00000389470	ENST00000265857		TCGA	RV	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	GET4	chr7	930565	+
In-frame	ENST00000389470	ENST00000407192		TCGA	RV	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	GET4	chr7	930565	+
intron-3CDS	ENST00000493531	ENST00000265857		TCGA	RV	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	GET4	chr7	930565	+
intron-3CDS	ENST00000493531	ENST00000407192		TCGA	RV	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	GET4	chr7	930565	+
5CDS-intron	ENST00000535193	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000535193	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000535193	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000543771	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000543771	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000381306	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381306	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000381309	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000381309	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-5UTR	ENST00000442236	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000442236	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-5UTR	ENST00000489243	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000489243	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000536108	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000536108	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-5UTR	ENST00000428870	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
5CDS-intron	ENST00000428870	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000381196		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000360074		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000537002		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000397617		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000358503		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000397611		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000355233		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000356435		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000540109		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000486161		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000397606		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-5UTR	ENST00000401787	ENST00000463477		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
intron-intron	ENST00000401787	ENST00000471274		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	KDM4C	chr9	6990524	+	PTPRD	chr9	10341017	-
Frame-shit	ENST00000458385	ENST00000337664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000458385	ENST00000509167		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000458385	ENST00000515480		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000458385	ENST00000353187		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
In-frame	ENST00000514798	ENST00000337664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
In-frame	ENST00000514798	ENST00000509167		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
In-frame	ENST00000514798	ENST00000515480		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
In-frame	ENST00000514798	ENST00000353187		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000296775	ENST00000337664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000296775	ENST00000509167		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000296775	ENST00000515480		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
Frame-shit	ENST00000296775	ENST00000353187		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
intron-3CDS	ENST00000502992	ENST00000337664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
intron-3CDS	ENST00000502992	ENST00000509167		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
intron-3CDS	ENST00000502992	ENST00000515480		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
intron-3CDS	ENST00000502992	ENST00000353187		TCGA	RV	PRAD	TCGA-EJ-5511-01A	KIAA1430	chr4	186111297	-	AADAT	chr4	171008399	-
5CDS-5UTR	ENST00000524189	ENST00000301908		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	KIF13B	chr8	29023179	-	PNOC	chr8	28186652	+
5CDS-intron	ENST00000524189	ENST00000522209		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	KIF13B	chr8	29023179	-	PNOC	chr8	28186652	+
5CDS-5UTR	ENST00000521515	ENST00000301908		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	KIF13B	chr8	29023179	-	PNOC	chr8	28186652	+
5CDS-intron	ENST00000521515	ENST00000522209		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	KIF13B	chr8	29023179	-	PNOC	chr8	28186652	+
intron-5UTR	ENST00000404075	ENST00000301908		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	KIF13B	chr8	29023179	-	PNOC	chr8	28186652	+
intron-intron	ENST00000404075	ENST00000522209		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	KIF13B	chr8	29023179	-	PNOC	chr8	28186652	+
5CDS-5UTR	ENST00000320785	ENST00000334527		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
5CDS-5UTR	ENST00000320785	ENST00000299734		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
5CDS-5UTR	ENST00000320785	ENST00000585098		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
5CDS-5UTR	ENST00000320785	ENST00000380025		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
5CDS-5UTR	ENST00000320785	ENST00000402554		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
5CDS-3UTR	ENST00000320785	ENST00000583066		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
3UTR-5UTR	ENST00000573815	ENST00000334527		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
3UTR-5UTR	ENST00000573815	ENST00000299734		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
3UTR-5UTR	ENST00000573815	ENST00000585098		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
3UTR-5UTR	ENST00000573815	ENST00000380025		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
3UTR-5UTR	ENST00000573815	ENST00000402554		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
3UTR-3UTR	ENST00000573815	ENST00000583066		TCGA	RV	PRAD	TCGA-J4-A67K-01A	KIF1C	chr17	4918132	+	NDEL1	chr17	8347578	+
5CDS-intron	ENST00000325321	ENST00000322776		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000532303		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000529927		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000415352		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000526169		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000322776		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000532303		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000529927		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000415352		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000526169		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000322776		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000532303		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000529927		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000415352		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000526169		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000322776		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000532303		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000529927		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000415352		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000526169		TCGA	RV	PRAD	TCGA-CH-5753-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-5UTR	ENST00000167462	ENST00000512055		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000429747		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000512332		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000511604		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000502818		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000503204		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000375227	ENST00000512055		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000429747		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000512332		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000511604		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000502818		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000503204		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000392550	ENST00000512055		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000429747		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000512332		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000511604		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000502818		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000503204		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000578363	ENST00000512055		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000429747		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000512332		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000511604		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000502818		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000503204		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000577200	ENST00000512055		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000429747		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000512332		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000511604		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000502818		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000503204		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559887	+	CPNE4	chr3	131759165	-
intron-3CDS	ENST00000568630	ENST00000370355		TCGA	RV	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41962156	+	SCD	chr10	102107821	+
Frame-shit	ENST00000545763	ENST00000370355		TCGA	RV	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41962156	+	SCD	chr10	102107821	+
Frame-shit	ENST00000389936	ENST00000370355		TCGA	RV	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41962156	+	SCD	chr10	102107821	+
Frame-shit	ENST00000219905	ENST00000370355		TCGA	RV	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41962156	+	SCD	chr10	102107821	+
Frame-shit	ENST00000566586	ENST00000370355		TCGA	RV	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41962156	+	SCD	chr10	102107821	+
Frame-shit	ENST00000570161	ENST00000370355		TCGA	RV	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41962156	+	SCD	chr10	102107821	+
5CDS-intron	ENST00000381226	ENST00000311303		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381226	ENST00000448542		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-3UTR	ENST00000381226	ENST00000416054		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381226	ENST00000532355		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381213	ENST00000311303		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381213	ENST00000448542		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-3UTR	ENST00000381213	ENST00000416054		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381213	ENST00000532355		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381199	ENST00000311303		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381199	ENST00000448542		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-3UTR	ENST00000381199	ENST00000416054		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000381199	ENST00000532355		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000409421	ENST00000311303		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000409421	ENST00000448542		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-3UTR	ENST00000409421	ENST00000416054		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
5CDS-intron	ENST00000409421	ENST00000532355		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
intron-intron	ENST00000546593	ENST00000311303		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
intron-intron	ENST00000546593	ENST00000448542		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
intron-3UTR	ENST00000546593	ENST00000416054		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
intron-intron	ENST00000546593	ENST00000532355		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	MIER3	chr5	56229074	-	ABCC12	chr16	48130843	-
Frame-shit	ENST00000262966	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000262966	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000262966	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000262966	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000262966	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
5CDS-intron	ENST00000262966	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000359935	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000359935	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000359935	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000359935	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000359935	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
5CDS-intron	ENST00000359935	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000599840	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000599840	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000599840	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000599840	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
Frame-shit	ENST00000599840	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
5CDS-intron	ENST00000599840	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	MPND	chr19	4343597	+	RABEP1	chr17	5264503	+
intron-3CDS	ENST00000475040	ENST00000409198		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-3CDS	ENST00000475040	ENST00000397345		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-3CDS	ENST00000475040	ENST00000427231		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-3CDS	ENST00000475040	ENST00000172853		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-3CDS	ENST00000475040	ENST00000604864		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-3CDS	ENST00000475040	ENST00000603639		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-intron	ENST00000475040	ENST00000397336		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-intron	ENST00000475040	ENST00000509223		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
intron-intron	ENST00000475040	ENST00000498015		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
Frame-shit	ENST00000272418	ENST00000409198		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
Frame-shit	ENST00000272418	ENST00000397345		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
Frame-shit	ENST00000272418	ENST00000427231		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
Frame-shit	ENST00000272418	ENST00000172853		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
Frame-shit	ENST00000272418	ENST00000604864		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
Frame-shit	ENST00000272418	ENST00000603639		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
5CDS-intron	ENST00000272418	ENST00000397336		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
5CDS-intron	ENST00000272418	ENST00000509223		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
5CDS-intron	ENST00000272418	ENST00000498015		TCGA	RV	PRAD	TCGA-CH-5788-01A	MRPS5	chr2	95766582	-	NEB	chr2	152554162	-
5CDS-5UTR	ENST00000547405	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000547405	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000547405	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000452455	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000452455	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000452455	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000360610	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000360610	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000360610	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000441232	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000441232	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000441232	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000392934	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000392934	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000392934	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000547509	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000547509	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000547509	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000361685	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000361685	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000361685	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
intron-5UTR	ENST00000550501	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
intron-5UTR	ENST00000550501	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
intron-intron	ENST00000550501	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000549145	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000549145	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000549145	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000553190	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000553190	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000553190	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000536007	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000536007	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000536007	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000541119	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000541119	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000541119	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000545503	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000545503	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000545503	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000361466	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000361466	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000361466	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000551300	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000551300	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000551300	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000550270	ENST00000242152		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-5UTR	ENST00000550270	ENST00000407573		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
5CDS-intron	ENST00000550270	ENST00000405982		TCGA	RV	PRAD	TCGA-HC-7752-01A	MYBPC1	chr12	102025497	+	NPY	chr7	24323807	+
In-frame	ENST00000226209	ENST00000222982		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
In-frame	ENST00000226209	ENST00000343703		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-3UTR	ENST00000226209	ENST00000339843		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-5UTR	ENST00000226209	ENST00000480723		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-intron	ENST00000226209	ENST00000439761		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
In-frame	ENST00000583535	ENST00000222982		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
In-frame	ENST00000583535	ENST00000343703		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-3UTR	ENST00000583535	ENST00000339843		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-5UTR	ENST00000583535	ENST00000480723		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-intron	ENST00000583535	ENST00000439761		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	MYH3	chr17	10532914	-	CYP3A5	chr7	99264688	-
5CDS-intron	ENST00000294785	ENST00000338854		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000294785	ENST00000395757		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000294785	ENST00000355815		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000294785	ENST00000261646		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000294785	ENST00000435530		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000294785	ENST00000583732		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000368063	ENST00000338854		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000368063	ENST00000395757		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000368063	ENST00000355815		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000368063	ENST00000261646		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000368063	ENST00000435530		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000368063	ENST00000583732		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000535857	ENST00000338854		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000535857	ENST00000395757		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000535857	ENST00000355815		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000535857	ENST00000261646		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000535857	ENST00000435530		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000535857	ENST00000583732		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000392212	ENST00000338854		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000392212	ENST00000395757		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000392212	ENST00000355815		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000392212	ENST00000261646		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000392212	ENST00000435530		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
5CDS-intron	ENST00000392212	ENST00000583732		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000459963	ENST00000338854		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000459963	ENST00000395757		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000459963	ENST00000355815		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000459963	ENST00000261646		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000459963	ENST00000435530		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000459963	ENST00000583732		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000368065	ENST00000338854		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000368065	ENST00000395757		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000368065	ENST00000355815		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000368065	ENST00000261646		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000368065	ENST00000435530		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
intron-intron	ENST00000368065	ENST00000583732		TCGA	RV	PRAD	TCGA-HC-7213-01A	NCSTN	chr1	160328736	+	SREBF1	chr17	17726944	-
In-frame	ENST00000334527	ENST00000446256		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000334527	ENST00000445061		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000334527	ENST00000476446		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000334527	ENST00000348968		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000334527	ENST00000457607		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000299734	ENST00000446256		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000299734	ENST00000445061		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000299734	ENST00000476446		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000299734	ENST00000348968		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000299734	ENST00000457607		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-3CDS	ENST00000585098	ENST00000446256		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-3CDS	ENST00000585098	ENST00000445061		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000585098	ENST00000476446		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000585098	ENST00000348968		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000585098	ENST00000457607		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000380025	ENST00000446256		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000380025	ENST00000445061		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000380025	ENST00000476446		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000380025	ENST00000348968		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000380025	ENST00000457607		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000402554	ENST00000446256		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
In-frame	ENST00000402554	ENST00000445061		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000402554	ENST00000476446		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000402554	ENST00000348968		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
5CDS-intron	ENST00000402554	ENST00000457607		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-3CDS	ENST00000583066	ENST00000446256		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-3CDS	ENST00000583066	ENST00000445061		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000583066	ENST00000476446		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000583066	ENST00000348968		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000583066	ENST00000457607		TCGA	RV	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8352004	+	DHX30	chr3	47868837	+
intron-intron	ENST00000397661	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000397661	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000397661	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000592199	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000592199	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000592199	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000587760	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000587760	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000587760	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000585575	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000585575	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000585575	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000360105	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000360105	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000360105	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000588228	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000588228	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000588228	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000587260	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000587260	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000587260	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000358552	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000358552	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000358552	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000588680	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000588680	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000588680	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-5506-01A	NFIX	chr19	13209610	+	ANXA1	chr9	75772570	+
5CDS-5UTR	ENST00000472647	ENST00000368346		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5CDS-5UTR	ENST00000472647	ENST00000392403		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5CDS-5UTR	ENST00000472647	ENST00000548830		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5CDS-5UTR	ENST00000367811	ENST00000368346		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5CDS-5UTR	ENST00000367811	ENST00000392403		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5CDS-5UTR	ENST00000367811	ENST00000548830		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5UTR-5UTR	ENST00000469474	ENST00000368346		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5UTR-5UTR	ENST00000469474	ENST00000392403		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
5UTR-5UTR	ENST00000469474	ENST00000548830		TCGA	RV	PRAD	TCGA-EJ-5518-01A	NME7	chr1	169292355	-	ASH1L	chr1	155491409	-
intron-3CDS	ENST00000331483	ENST00000310325		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-5UTR	ENST00000331483	ENST00000533168		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-3CDS	ENST00000576390	ENST00000310325		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-5UTR	ENST00000576390	ENST00000533168		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-3CDS	ENST00000439918	ENST00000310325		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-5UTR	ENST00000439918	ENST00000533168		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-3CDS	ENST00000472244	ENST00000310325		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
intron-5UTR	ENST00000472244	ENST00000533168		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	P4HB	chr17	79801042	-	CTSF	chr11	66334990	-
5CDS-5UTR	ENST00000406610	ENST00000199940		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000406610	ENST00000360351		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000406610	ENST00000361559		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000406610	ENST00000392194		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000406610	ENST00000447185		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000406610	ENST00000475600		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-5UTR	ENST00000462231	ENST00000199940		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000462231	ENST00000360351		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000462231	ENST00000361559		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000462231	ENST00000392194		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000462231	ENST00000447185		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000462231	ENST00000475600		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-5UTR	ENST00000349953	ENST00000199940		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000349953	ENST00000360351		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000349953	ENST00000361559		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000349953	ENST00000392194		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000349953	ENST00000447185		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000349953	ENST00000475600		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-5UTR	ENST00000358768	ENST00000199940		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000358768	ENST00000360351		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000358768	ENST00000361559		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000358768	ENST00000392194		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000358768	ENST00000447185		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000358768	ENST00000475600		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-5UTR	ENST00000351153	ENST00000199940		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000351153	ENST00000360351		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000351153	ENST00000361559		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000351153	ENST00000392194		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000351153	ENST00000447185		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-intron	ENST00000351153	ENST00000475600		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
intron-5UTR	ENST00000488622	ENST00000199940		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
intron-intron	ENST00000488622	ENST00000360351		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
intron-intron	ENST00000488622	ENST00000361559		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
intron-intron	ENST00000488622	ENST00000392194		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
intron-intron	ENST00000488622	ENST00000447185		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
intron-intron	ENST00000488622	ENST00000475600		TCGA	RV	PRAD	TCGA-HC-8258-01A	PARD3B	chr2	205410842	+	MAP2	chr2	210372316	+
5CDS-5UTR	ENST00000406610	ENST00000519416		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000406610	ENST00000520615		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000406610	ENST00000443286		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000406610	ENST00000520340		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000406610	ENST00000518415		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000522752		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000348567		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000330691		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000317827		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000379931		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000276520		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000406610	ENST00000520973		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000406610	ENST00000520611		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000462231	ENST00000519416		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000462231	ENST00000520615		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000462231	ENST00000443286		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000462231	ENST00000520340		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000462231	ENST00000518415		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000522752		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000348567		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000330691		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000317827		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000379931		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000276520		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000462231	ENST00000520973		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000462231	ENST00000520611		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000349953	ENST00000519416		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000349953	ENST00000520615		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000349953	ENST00000443286		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000349953	ENST00000520340		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000349953	ENST00000518415		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000522752		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000348567		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000330691		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000317827		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000379931		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000276520		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000349953	ENST00000520973		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000349953	ENST00000520611		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000358768	ENST00000519416		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000358768	ENST00000520615		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000358768	ENST00000443286		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000358768	ENST00000520340		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000358768	ENST00000518415		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000522752		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000348567		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000330691		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000317827		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000379931		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000276520		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000358768	ENST00000520973		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000358768	ENST00000520611		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000351153	ENST00000519416		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000351153	ENST00000520615		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000351153	ENST00000443286		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000351153	ENST00000520340		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000351153	ENST00000518415		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000522752		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000348567		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000330691		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000317827		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000379931		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000276520		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-5UTR	ENST00000351153	ENST00000520973		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-intron	ENST00000351153	ENST00000520611		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-5UTR	ENST00000488622	ENST00000519416		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-5UTR	ENST00000488622	ENST00000520615		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-5UTR	ENST00000488622	ENST00000443286		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-5UTR	ENST00000488622	ENST00000520340		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-5UTR	ENST00000488622	ENST00000518415		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000522752		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000348567		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000330691		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000317827		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000379931		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000276520		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-5UTR	ENST00000488622	ENST00000520973		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
intron-intron	ENST00000488622	ENST00000520611		TCGA	RV	PRAD	TCGA-CH-5794-01A	PARD3B	chr2	205551005	+	TACC1	chr8	38677040	+
5CDS-3UTR	ENST00000334956	ENST00000507951		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000334956	ENST00000509242		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000334956	ENST00000556177		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000334956	ENST00000261532		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000334956	ENST00000380887		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-3UTR	ENST00000539723	ENST00000507951		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000539723	ENST00000509242		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000539723	ENST00000556177		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000539723	ENST00000261532		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000539723	ENST00000380887		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-3UTR	ENST00000550549	ENST00000507951		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000550549	ENST00000509242		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000550549	ENST00000556177		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000550549	ENST00000261532		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
5CDS-5UTR	ENST00000550549	ENST00000380887		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-3UTR	ENST00000538608	ENST00000507951		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000538608	ENST00000509242		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000538608	ENST00000556177		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000538608	ENST00000261532		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000538608	ENST00000380887		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-3UTR	ENST00000526746	ENST00000507951		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000526746	ENST00000509242		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000526746	ENST00000556177		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000526746	ENST00000261532		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-5UTR	ENST00000526746	ENST00000380887		TCGA	RV	PRAD	TCGA-VP-A875-01A	PARVA	chr11	12399330	+	ESRRB	chr14	76905684	+
intron-intron	ENST00000419333	ENST00000470610		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000419333	ENST00000389672		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000419333	ENST00000542517		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000419333	ENST00000514100		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000419333	ENST00000502694		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000419333	ENST00000442602		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000292823	ENST00000470610		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000292823	ENST00000389672		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000292823	ENST00000542517		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000292823	ENST00000514100		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000292823	ENST00000502694		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000292823	ENST00000442602		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000431016	ENST00000470610		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000431016	ENST00000389672		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000431016	ENST00000542517		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000431016	ENST00000514100		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000431016	ENST00000502694		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000431016	ENST00000442602		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000491544	ENST00000470610		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000491544	ENST00000389672		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000491544	ENST00000542517		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000491544	ENST00000514100		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000491544	ENST00000502694		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-intron	ENST00000491544	ENST00000442602		TCGA	RV	PRAD	TCGA-KK-A59X-01A	PCYT1A	chr3	196014403	-	EPHA6	chr3	97123994	+
intron-5UTR	ENST00000340635	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000340635	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000340635	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000340635	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000360047	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000360047	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000360047	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000360047	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000507116	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000507116	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000507116	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000507116	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-5UTR	ENST00000502484	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-intron	ENST00000502484	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-intron	ENST00000502484	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-5UTR	ENST00000502484	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-5UTR	ENST00000546160	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-intron	ENST00000546160	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-intron	ENST00000546160	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-5UTR	ENST00000546160	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000502575	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000502575	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000502575	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000502575	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000358923	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000358923	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000358923	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000358923	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503258	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503258	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503258	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503258	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000405755	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000405755	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000405755	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000405755	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000317118	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000317118	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000317118	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000317118	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503947	ENST00000508821		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503947	ENST00000425382		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503947	ENST00000438340		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503947	ENST00000505959		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PDE4D	chr5	59284315	-	ELOVL7	chr5	60095057	-
5CDS-intron	ENST00000263666	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000263666	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000263666	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000263666	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000263666	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000263666	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000466780	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466780	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466780	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466780	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466780	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466780	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-intron	ENST00000308537	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000308537	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000308537	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000308537	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000308537	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
5CDS-5UTR	ENST00000308537	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000462146	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000462146	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000462146	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000462146	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000462146	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000462146	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000535920	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000535920	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000535920	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000535920	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000535920	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000535920	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000479530	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000479530	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000479530	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000479530	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000479530	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000479530	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-intron	ENST00000466348	ENST00000425534		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466348	ENST00000389826		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466348	ENST00000448225		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466348	ENST00000295612		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466348	ENST00000468147		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
intron-5UTR	ENST00000466348	ENST00000421769		TCGA	RV	PRAD	TCGA-VP-A87K-01A	PDZRN3	chr3	73651505	-	EIF4E3	chr3	71777774	-
In-frame	ENST00000332830	ENST00000378526		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
In-frame	ENST00000332830	ENST00000262327		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
5CDS-intron	ENST00000332830	ENST00000586407		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
In-frame	ENST00000577226	ENST00000378526		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
In-frame	ENST00000577226	ENST00000262327		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
5CDS-intron	ENST00000577226	ENST00000586407		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
In-frame	ENST00000268756	ENST00000378526		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
In-frame	ENST00000268756	ENST00000262327		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
5CDS-intron	ENST00000268756	ENST00000586407		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
intron-3CDS	ENST00000582655	ENST00000378526		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
intron-3CDS	ENST00000582655	ENST00000262327		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
intron-intron	ENST00000582655	ENST00000586407		TCGA	RV	PRAD	TCGA-G9-7509-01A	PHF12	chr17	27277083	-	LIG3	chr17	33324757	+
In-frame	ENST00000404072	ENST00000344710		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000404072	ENST00000397525		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000404072	ENST00000330125		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000404072	ENST00000397523		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000404072	ENST00000382180		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
5CDS-intron	ENST00000404072	ENST00000441289		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
3UTR-3CDS	ENST00000468288	ENST00000344710		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
3UTR-3CDS	ENST00000468288	ENST00000397525		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
3UTR-3CDS	ENST00000468288	ENST00000330125		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
3UTR-3CDS	ENST00000468288	ENST00000397523		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
3UTR-3CDS	ENST00000468288	ENST00000382180		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
3UTR-intron	ENST00000468288	ENST00000441289		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000356976	ENST00000344710		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000356976	ENST00000397525		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000356976	ENST00000330125		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000356976	ENST00000397523		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000356976	ENST00000382180		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
5CDS-intron	ENST00000356976	ENST00000441289		TCGA	RV	PRAD	TCGA-HC-7821-01A	PICK1	chr22	38461137	+	EIF4ENIF1	chr22	31851973	-
In-frame	ENST00000327757	ENST00000258418		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
In-frame	ENST00000327757	ENST00000410084		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
In-frame	ENST00000327757	ENST00000409788		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
5CDS-intron	ENST00000327757	ENST00000484398		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
In-frame	ENST00000422425	ENST00000258418		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
In-frame	ENST00000422425	ENST00000410084		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
In-frame	ENST00000422425	ENST00000409788		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
5CDS-intron	ENST00000422425	ENST00000484398		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-3CDS	ENST00000541605	ENST00000258418		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-3CDS	ENST00000541605	ENST00000410084		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-3CDS	ENST00000541605	ENST00000409788		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-intron	ENST00000541605	ENST00000484398		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-3CDS	ENST00000329020	ENST00000258418		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-3CDS	ENST00000329020	ENST00000410084		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-3CDS	ENST00000329020	ENST00000409788		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
intron-intron	ENST00000329020	ENST00000484398		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	PLB1	chr2	28742630	+	CAB39	chr2	231678764	+
In-frame	ENST00000348657	ENST00000331018		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
In-frame	ENST00000348657	ENST00000266254		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000348657	ENST00000445824		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
In-frame	ENST00000252115	ENST00000331018		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
In-frame	ENST00000252115	ENST00000266254		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000252115	ENST00000445824		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
In-frame	ENST00000339677	ENST00000331018		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
In-frame	ENST00000339677	ENST00000266254		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
5CDS-intron	ENST00000339677	ENST00000445824		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000451060	ENST00000331018		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000451060	ENST00000266254		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-intron	ENST00000451060	ENST00000445824		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000491021	ENST00000331018		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000491021	ENST00000266254		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-intron	ENST00000491021	ENST00000445824		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	POLDIP3	chr22	43010805	-	TTLL1	chr22	43435911	-
intron-3CDS	ENST00000260970	ENST00000409672		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000260970	ENST00000303354		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000260970	ENST00000375387		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000260970	ENST00000409435		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000409714	ENST00000409672		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000409714	ENST00000303354		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000409714	ENST00000375387		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000409714	ENST00000409435		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000462903	ENST00000409672		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000462903	ENST00000303354		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000462903	ENST00000375387		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000462903	ENST00000409435		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000448752	ENST00000409672		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000448752	ENST00000303354		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000448752	ENST00000375387		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000448752	ENST00000409435		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000482772	ENST00000409672		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000482772	ENST00000303354		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000482772	ENST00000375387		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
intron-3CDS	ENST00000482772	ENST00000409435		TCGA	RV	PRAD	TCGA-EJ-7115-01A	PPIG	chr2	170441409	+	SCN9A	chr2	167163584	-
5UTR-3CDS	ENST00000409895	ENST00000405592		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000409895	ENST00000406652		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409895	ENST00000407270		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409895	ENST00000406911		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409895	ENST00000405094		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409895	ENST00000472767		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000409432	ENST00000405592		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000409432	ENST00000406652		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409432	ENST00000407270		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409432	ENST00000406911		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409432	ENST00000405094		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000409432	ENST00000472767		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000282412	ENST00000405592		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000282412	ENST00000406652		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000282412	ENST00000407270		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000282412	ENST00000406911		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000282412	ENST00000405094		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000282412	ENST00000472767		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000378551	ENST00000405592		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000378551	ENST00000406652		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000378551	ENST00000407270		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000378551	ENST00000406911		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000378551	ENST00000405094		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000378551	ENST00000472767		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
3UTR-3CDS	ENST00000378540	ENST00000405592		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
3UTR-3CDS	ENST00000378540	ENST00000406652		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
3UTR-intron	ENST00000378540	ENST00000407270		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
3UTR-intron	ENST00000378540	ENST00000406911		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
3UTR-intron	ENST00000378540	ENST00000405094		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
3UTR-intron	ENST00000378540	ENST00000472767		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000345249	ENST00000405592		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-3CDS	ENST00000345249	ENST00000406652		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000345249	ENST00000407270		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000345249	ENST00000406911		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000345249	ENST00000405094		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
5UTR-intron	ENST00000345249	ENST00000472767		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	PPM1B	chr2	44396413	+	MTA3	chr2	42980514	+
Frame-shit	ENST00000265563	ENST00000350061		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000265563	ENST00000288139		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000265563	ENST00000422281		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000265563	ENST00000498251		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000265563	ENST00000540742		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000265563	ENST00000544977		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000454963	ENST00000350061		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000454963	ENST00000288139		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000454963	ENST00000422281		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000454963	ENST00000498251		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000454963	ENST00000540742		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000454963	ENST00000544977		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000296446	ENST00000350061		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000296446	ENST00000288139		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
Frame-shit	ENST00000296446	ENST00000422281		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000296446	ENST00000498251		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000296446	ENST00000540742		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-intron	ENST00000296446	ENST00000544977		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	PRKAR2A	chr3	48845082	-	CACNA1D	chr3	53769401	+
5CDS-5UTR	ENST00000580170	ENST00000327606		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PTPRM	chr18	7774269	+	MC2R	chr18	13885645	-
5CDS-5UTR	ENST00000332175	ENST00000327606		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PTPRM	chr18	7774269	+	MC2R	chr18	13885645	-
5CDS-5UTR	ENST00000400060	ENST00000327606		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PTPRM	chr18	7774269	+	MC2R	chr18	13885645	-
5CDS-5UTR	ENST00000400053	ENST00000327606		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PTPRM	chr18	7774269	+	MC2R	chr18	13885645	-
intron-5UTR	ENST00000444013	ENST00000327606		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PTPRM	chr18	7774269	+	MC2R	chr18	13885645	-
intron-5UTR	ENST00000578571	ENST00000327606		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	PTPRM	chr18	7774269	+	MC2R	chr18	13885645	-
5CDS-intron	ENST00000353383	ENST00000438045		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
5CDS-intron	ENST00000353383	ENST00000248633		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
5CDS-intron	ENST00000353383	ENST00000428214		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
5CDS-intron	ENST00000353383	ENST00000541751		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000489697	ENST00000438045		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000489697	ENST00000248633		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000489697	ENST00000428214		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000489697	ENST00000541751		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000261641	ENST00000438045		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000261641	ENST00000248633		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000261641	ENST00000428214		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
intron-intron	ENST00000261641	ENST00000541751		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17707163	+	PEX1	chr7	92147569	-
Frame-shit	ENST00000380158	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000380158	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000380158	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000380158	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000380158	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000380158	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000380158	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000264572	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000264572	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000264572	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000264572	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000264572	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000264572	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000264572	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000408927	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000408927	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000408927	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408927	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408927	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408927	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408927	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000512857	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000512857	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000512857	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000512857	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000512857	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000512857	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-5UTR	ENST00000512857	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000453712	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000453712	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000453712	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000453712	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000453712	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000453712	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000453712	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000339360	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000339360	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000339360	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000339360	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000339360	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000339360	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000339360	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000408900	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000408900	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
Frame-shit	ENST00000408900	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408900	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408900	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408900	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
5CDS-5UTR	ENST00000408900	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-6361-01A	RAP1GDS1	chr4	99342545	+	ASTN2	chr9	119414072	-
intron-3CDS	ENST00000504604	ENST00000434826		TCGA	RV	PRAD	TCGA-G9-6373-01A	RAPGEF2	chr4	160268150	+	C4orf45	chr4	159814869	-
intron-5UTR	ENST00000504604	ENST00000508011		TCGA	RV	PRAD	TCGA-G9-6373-01A	RAPGEF2	chr4	160268150	+	C4orf45	chr4	159814869	-
In-frame	ENST00000264431	ENST00000434826		TCGA	RV	PRAD	TCGA-G9-6373-01A	RAPGEF2	chr4	160268150	+	C4orf45	chr4	159814869	-
5CDS-5UTR	ENST00000264431	ENST00000508011		TCGA	RV	PRAD	TCGA-G9-6373-01A	RAPGEF2	chr4	160268150	+	C4orf45	chr4	159814869	-
intron-3CDS	ENST00000504604	ENST00000247833		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-3CDS	ENST00000504604	ENST00000378815		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000504604	ENST00000325555		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000504604	ENST00000483530		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000504604	ENST00000550536		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000504604	ENST00000362025		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000504604	ENST00000551641		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000504604	ENST00000553099		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-intron	ENST00000504604	ENST00000550847		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-3CDS	ENST00000264431	ENST00000247833		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-3CDS	ENST00000264431	ENST00000378815		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000264431	ENST00000325555		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000264431	ENST00000483530		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000264431	ENST00000550536		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000264431	ENST00000362025		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000264431	ENST00000551641		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-5UTR	ENST00000264431	ENST00000553099		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
intron-intron	ENST00000264431	ENST00000550847		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	RAPGEF2	chr4	160114408	+	RAB3IP	chr12	70188217	+
5CDS-5UTR	ENST00000448150	ENST00000524800		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-5UTR	ENST00000448150	ENST00000367900		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-5UTR	ENST00000448150	ENST00000271452		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-intron	ENST00000448150	ENST00000490881		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-5UTR	ENST00000367649	ENST00000524800		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-5UTR	ENST00000367649	ENST00000367900		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-5UTR	ENST00000367649	ENST00000271452		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
5CDS-intron	ENST00000367649	ENST00000490881		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-5UTR	ENST00000465723	ENST00000524800		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-5UTR	ENST00000465723	ENST00000367900		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-5UTR	ENST00000465723	ENST00000271452		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-intron	ENST00000465723	ENST00000490881		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-5UTR	ENST00000462775	ENST00000524800		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-5UTR	ENST00000462775	ENST00000367900		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-5UTR	ENST00000462775	ENST00000271452		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
intron-intron	ENST00000462775	ENST00000490881		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178063829	+	NUF2	chr1	163295822	+
Frame-shit	ENST00000545145	ENST00000361168		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
Frame-shit	ENST00000545145	ENST00000368361		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
Frame-shit	ENST00000545145	ENST00000355560		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
5CDS-intron	ENST00000545145	ENST00000497188		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
5CDS-intron	ENST00000545145	ENST00000536801		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
Frame-shit	ENST00000392561	ENST00000361168		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
Frame-shit	ENST00000392561	ENST00000368361		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
Frame-shit	ENST00000392561	ENST00000355560		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
5CDS-intron	ENST00000392561	ENST00000497188		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
5CDS-intron	ENST00000392561	ENST00000536801		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
In-frame	ENST00000261741	ENST00000361168		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
In-frame	ENST00000261741	ENST00000368361		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
In-frame	ENST00000261741	ENST00000355560		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
5CDS-intron	ENST00000261741	ENST00000497188		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
5CDS-intron	ENST00000261741	ENST00000536801		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
intron-3CDS	ENST00000553232	ENST00000361168		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
intron-3CDS	ENST00000553232	ENST00000368361		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
intron-3CDS	ENST00000553232	ENST00000355560		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
intron-intron	ENST00000553232	ENST00000497188		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
intron-intron	ENST00000553232	ENST00000536801		TCGA	RV	PRAD	TCGA-VP-A87K-01A	RBM19	chr12	114364859	-	CLK2	chr1	155240768	-
In-frame	ENST00000357277	ENST00000380122		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000357277	ENST00000398155		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000357277	ENST00000485153		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
In-frame	ENST00000303843	ENST00000380122		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000303843	ENST00000398155		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
5CDS-intron	ENST00000303843	ENST00000485153		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
intron-3CDS	ENST00000380064	ENST00000380122		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
intron-intron	ENST00000380064	ENST00000398155		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
intron-intron	ENST00000380064	ENST00000485153		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
intron-3CDS	ENST00000469714	ENST00000380122		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
intron-intron	ENST00000469714	ENST00000398155		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
intron-intron	ENST00000469714	ENST00000485153		TCGA	RV	PRAD	TCGA-VP-A87H-01A	REPS2	chrX	16965257	+	TXLNG	chrX	16836697	+
In-frame	ENST00000367669	ENST00000263187		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	RFWD2	chr1	176118142	-	MSH4	chr1	76378381	+
In-frame	ENST00000308769	ENST00000263187		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	RFWD2	chr1	176118142	-	MSH4	chr1	76378381	+
Frame-shit	ENST00000319104	ENST00000602723		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000319104	ENST00000400186		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000319104	ENST00000520002		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000319104	ENST00000602557		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000319104	ENST00000537824		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000319104	ENST00000542608		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000319104	ENST00000539096		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5CDS-intron	ENST00000319104	ENST00000523387		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000602723		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000400186		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000520002		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000602557		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000537824		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000542608		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-3CDS	ENST00000319073	ENST00000539096		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5UTR-intron	ENST00000319073	ENST00000523387		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000602723		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000400186		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000520002		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000602557		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000537824		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000542608		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000534961	ENST00000539096		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5CDS-intron	ENST00000534961	ENST00000523387		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000602723		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000400186		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000520002		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000602557		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000537824		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000542608		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
Frame-shit	ENST00000527424	ENST00000539096		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5CDS-intron	ENST00000527424	ENST00000523387		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000602723		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000400186		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000520002		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000602557		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000537824		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000542608		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-3CDS	ENST00000526349	ENST00000539096		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
intron-intron	ENST00000526349	ENST00000523387		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	RNF170	chr8	42742871	-	CSMD1	chr8	3474319	-
5CDS-intron	ENST00000534797	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000534797	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000534797	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000534797	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000534797	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000534797	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000534797	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000534797	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397614	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397614	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397614	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397614	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397614	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000397614	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000397614	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397615	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397615	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397615	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397615	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397615	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000397615	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000397615	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397604	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397604	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397604	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000397604	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000397604	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000397604	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000397604	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533410	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533410	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533410	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533410	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533410	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000533410	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000533410	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000438658	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000438658	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000438658	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000438658	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000438658	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000438658	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000438658	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000354420	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000354420	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000354420	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000354420	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000354420	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000354420	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000354420	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000356187	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000356187	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000356187	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000356187	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000356187	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000356187	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000356187	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000547405		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000452455		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000360610		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000441232		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000392934		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000547509		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000361685		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533592	ENST00000550501		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533592	ENST00000549145		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533592	ENST00000553190		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000533592	ENST00000536007		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000541119		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000545503		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-intron	ENST00000533592	ENST00000361466		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000533592	ENST00000551300		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000533592	ENST00000550270		TCGA	RV	PRAD	TCGA-EJ-7794-01A	RNH1	chr11	494515	-	MYBPC1	chr12	102008274	+
5UTR-3CDS	ENST00000537330	ENST00000390015		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5UTR-intron	ENST00000537330	ENST00000574376		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5UTR-intron	ENST00000537330	ENST00000302262		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
In-frame	ENST00000570891	ENST00000390015		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5CDS-intron	ENST00000570891	ENST00000574376		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5CDS-intron	ENST00000570891	ENST00000302262		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
In-frame	ENST00000306801	ENST00000390015		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5CDS-intron	ENST00000306801	ENST00000574376		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5CDS-intron	ENST00000306801	ENST00000302262		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
In-frame	ENST00000544334	ENST00000390015		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5CDS-intron	ENST00000544334	ENST00000574376		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
5CDS-intron	ENST00000544334	ENST00000302262		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
intron-3CDS	ENST00000575542	ENST00000390015		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
intron-intron	ENST00000575542	ENST00000574376		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
intron-intron	ENST00000575542	ENST00000302262		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	RPTOR	chr17	78519591	+	GAA	chr17	78079548	+
Frame-shit	ENST00000379933	ENST00000266458		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000379933	ENST00000421801		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379933	ENST00000544284		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000379933	ENST00000545047		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000379933	ENST00000543602		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000379933	ENST00000545887		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-3UTR	ENST00000379933	ENST00000539289		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379933	ENST00000546017		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379933	ENST00000535576		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379933	ENST00000539170		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000379938	ENST00000266458		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000379938	ENST00000421801		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379938	ENST00000544284		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000379938	ENST00000545047		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000379938	ENST00000543602		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000379938	ENST00000545887		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-3UTR	ENST00000379938	ENST00000539289		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379938	ENST00000546017		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379938	ENST00000535576		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000379938	ENST00000539170		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000334984	ENST00000266458		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000334984	ENST00000421801		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000334984	ENST00000544284		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000334984	ENST00000545047		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000334984	ENST00000543602		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000334984	ENST00000545887		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-3UTR	ENST00000334984	ENST00000539289		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000334984	ENST00000546017		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000334984	ENST00000535576		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000334984	ENST00000539170		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000349384	ENST00000266458		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000349384	ENST00000421801		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000349384	ENST00000544284		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000349384	ENST00000545047		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000349384	ENST00000543602		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-intron	ENST00000349384	ENST00000545887		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-3UTR	ENST00000349384	ENST00000539289		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000349384	ENST00000546017		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000349384	ENST00000535576		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
5CDS-5UTR	ENST00000349384	ENST00000539170		TCGA	RV	PRAD	TCGA-G9-6353-01A	RREB1	chr6	7232140	+	GABARAPL1	chr12	10370662	+
Frame-shit	ENST00000477973	ENST00000418658		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
Frame-shit	ENST00000477973	ENST00000397461		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
Frame-shit	ENST00000477973	ENST00000427331		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
5CDS-intron	ENST00000477973	ENST00000358480		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
5CDS-intron	ENST00000477973	ENST00000397459		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
5CDS-intron	ENST00000477973	ENST00000448906		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
5CDS-intron	ENST00000477973	ENST00000475817		TCGA	RV	PRAD	TCGA-G9-6339-01A	RYBP	chr3	72495647	-	CNTN4	chr3	2777899	+
In-frame	ENST00000477973	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
In-frame	ENST00000477973	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000477973	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000477973	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000477973	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
In-frame	ENST00000252542	ENST00000398148		TCGA	RV	PRAD	TCGA-EJ-5515-01A	SAFB2	chr19	5616143	-	KHSRP	chr19	6418090	-
intron-3CDS	ENST00000591310	ENST00000398148		TCGA	RV	PRAD	TCGA-EJ-5515-01A	SAFB2	chr19	5616143	-	KHSRP	chr19	6418090	-
Frame-shit	ENST00000366630	ENST00000493030		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
Frame-shit	ENST00000366630	ENST00000284551		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
5CDS-intron	ENST00000366630	ENST00000460651		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
5CDS-intron	ENST00000366630	ENST00000366699		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
In-frame	ENST00000262861	ENST00000493030		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
In-frame	ENST00000262861	ENST00000284551		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
5CDS-intron	ENST00000262861	ENST00000460651		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
5CDS-intron	ENST00000262861	ENST00000366699		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-3CDS	ENST00000308942	ENST00000493030		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-3CDS	ENST00000308942	ENST00000284551		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-intron	ENST00000308942	ENST00000460651		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-intron	ENST00000308942	ENST00000366699		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-3CDS	ENST00000486472	ENST00000493030		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-3CDS	ENST00000486472	ENST00000284551		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-intron	ENST00000486472	ENST00000460651		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
intron-intron	ENST00000486472	ENST00000366699		TCGA	RV	PRAD	TCGA-VP-A876-01A	SIPA1L2	chr1	232626620	-	TRIM11	chr1	228589862	-
5CDS-5UTR	ENST00000230640	ENST00000322611		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	SKIV2L2	chr5	54711960	+	BASP1	chr5	17275317	+
5CDS-5UTR	ENST00000545714	ENST00000322611		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	SKIV2L2	chr5	54711960	+	BASP1	chr5	17275317	+
intron-5UTR	ENST00000504388	ENST00000322611		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	SKIV2L2	chr5	54711960	+	BASP1	chr5	17275317	+
In-frame	ENST00000230640	ENST00000319211		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SKIV2L2	chr5	54603975	+	F2R	chr5	76028139	+
5CDS-intron	ENST00000230640	ENST00000505600		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SKIV2L2	chr5	54603975	+	F2R	chr5	76028139	+
Frame-shit	ENST00000545714	ENST00000319211		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SKIV2L2	chr5	54603975	+	F2R	chr5	76028139	+
5CDS-intron	ENST00000545714	ENST00000505600		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SKIV2L2	chr5	54603975	+	F2R	chr5	76028139	+
3UTR-3CDS	ENST00000504388	ENST00000319211		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SKIV2L2	chr5	54603975	+	F2R	chr5	76028139	+
3UTR-intron	ENST00000504388	ENST00000505600		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SKIV2L2	chr5	54603975	+	F2R	chr5	76028139	+
Frame-shit	ENST00000266771	ENST00000422113		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
5CDS-intron	ENST00000266771	ENST00000389441		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
intron-3CDS	ENST00000545031	ENST00000422113		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
intron-intron	ENST00000545031	ENST00000389441		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
intron-3CDS	ENST00000544112	ENST00000422113		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
intron-intron	ENST00000544112	ENST00000389441		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
5UTR-3CDS	ENST00000539703	ENST00000422113		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
5UTR-intron	ENST00000539703	ENST00000389441		TCGA	RV	PRAD	TCGA-M7-A724-01A	SLC15A4	chr12	129299320	-	TMEM132D	chr12	130185243	-
intron-3CDS	ENST00000452201	ENST00000336915		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000452201	ENST00000584924		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
In-frame	ENST00000398417	ENST00000336915		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000398417	ENST00000584924		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
In-frame	ENST00000342988	ENST00000336915		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000342988	ENST00000584924		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
In-frame	ENST00000588745	ENST00000336915		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
Frame-shit	ENST00000588745	ENST00000584924		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000586253	ENST00000336915		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000586253	ENST00000584924		TCGA	RV	PRAD	TCGA-J4-A67L-01A	SMAD4	chr18	48593557	+	SKAP1	chr17	46474147	-
intron-3CDS	ENST00000508394	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000508394	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3UTR	ENST00000508394	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
Frame-shit	ENST00000506595	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
Frame-shit	ENST00000506595	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
5CDS-3UTR	ENST00000506595	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
In-frame	ENST00000514685	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
In-frame	ENST00000514685	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
5CDS-3UTR	ENST00000514685	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000505128	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000505128	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3UTR	ENST00000505128	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000337581	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000337581	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3UTR	ENST00000337581	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
In-frame	ENST00000513838	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
In-frame	ENST00000513838	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
5CDS-3UTR	ENST00000513838	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
Frame-shit	ENST00000243112	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
Frame-shit	ENST00000243112	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
5CDS-3UTR	ENST00000243112	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000505662	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000505662	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3UTR	ENST00000505662	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000401977	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3CDS	ENST00000401977	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
intron-3UTR	ENST00000401977	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
Frame-shit	ENST00000514196	ENST00000261461		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
Frame-shit	ENST00000514196	ENST00000537030		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
5CDS-3UTR	ENST00000514196	ENST00000498129		TCGA	RV	PRAD	TCGA-XJ-A83H-01A	SMUG1	chr12	54576288	-	PPP2R5A	chr1	212506839	+
In-frame	ENST00000260197	ENST00000478968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000260197	ENST00000394783		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000260197	ENST00000407584		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000260197	ENST00000266014		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000260197	ENST00000491606		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
5CDS-intron	ENST00000260197	ENST00000463827		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
intron-3CDS	ENST00000532451	ENST00000478968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
intron-3CDS	ENST00000532451	ENST00000394783		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
intron-3CDS	ENST00000532451	ENST00000407584		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
intron-3CDS	ENST00000532451	ENST00000266014		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
intron-3CDS	ENST00000532451	ENST00000491606		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
intron-intron	ENST00000532451	ENST00000463827		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000525532	ENST00000478968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000525532	ENST00000394783		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000525532	ENST00000407584		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000525532	ENST00000266014		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000525532	ENST00000491606		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
5CDS-intron	ENST00000525532	ENST00000463827		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000532694	ENST00000478968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000532694	ENST00000394783		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000532694	ENST00000407584		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000532694	ENST00000266014		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000532694	ENST00000491606		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
5CDS-intron	ENST00000532694	ENST00000463827		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000534286	ENST00000478968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000534286	ENST00000394783		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000534286	ENST00000407584		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000534286	ENST00000266014		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000534286	ENST00000491606		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
5CDS-intron	ENST00000534286	ENST00000463827		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000527934	ENST00000478968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000527934	ENST00000394783		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000527934	ENST00000407584		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000527934	ENST00000266014		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
In-frame	ENST00000527934	ENST00000491606		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
5CDS-intron	ENST00000527934	ENST00000463827		TCGA	RV	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	GLT8D1	chr3	52731950	-
Frame-shit	ENST00000375759	ENST00000375999		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
Frame-shit	ENST00000375759	ENST00000417793		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
Frame-shit	ENST00000375759	ENST00000358897		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
Frame-shit	ENST00000375759	ENST00000375998		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
5CDS-intron	ENST00000375759	ENST00000375995		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
5CDS-intron	ENST00000375759	ENST00000401090		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
5CDS-3UTR	ENST00000375759	ENST00000471347		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
5CDS-intron	ENST00000375759	ENST00000314740		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-3CDS	ENST00000471538	ENST00000375999		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-3CDS	ENST00000471538	ENST00000417793		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-3CDS	ENST00000471538	ENST00000358897		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-3CDS	ENST00000471538	ENST00000375998		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-intron	ENST00000471538	ENST00000375995		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-intron	ENST00000471538	ENST00000401090		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-3UTR	ENST00000471538	ENST00000471347		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
intron-intron	ENST00000471538	ENST00000314740		TCGA	RV	PRAD	TCGA-YL-A9WI-01A	SPEN	chr1	16174645	+	FHAD1	chr1	15668232	+
Frame-shit	ENST00000373825	ENST00000396268		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
Frame-shit	ENST00000373825	ENST00000376266		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
Frame-shit	ENST00000373825	ENST00000396263		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
Frame-shit	ENST00000373825	ENST00000451521		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000480060		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000416163		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000400351		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000425620		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000466904		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000400352		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000414614		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000383341		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000474554		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000419528		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000428677		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000433804		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000481855		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000400412		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000400406		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000383527		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000470755		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000447252		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000452333		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000416392		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-intron	ENST00000373825	ENST00000467461		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000423325	ENST00000396268		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000423325	ENST00000376266		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000423325	ENST00000396263		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000423325	ENST00000451521		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000480060		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000416163		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000400351		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000425620		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000466904		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000400352		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000414614		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000383341		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000474554		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000419528		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000428677		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000433804		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000481855		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000400412		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000400406		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000383527		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000470755		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000447252		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000452333		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000416392		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000423325	ENST00000467461		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000373822	ENST00000396268		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000373822	ENST00000376266		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000373822	ENST00000396263		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-3CDS	ENST00000373822	ENST00000451521		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000480060		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000416163		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000400351		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000425620		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000466904		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000400352		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000414614		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000383341		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000474554		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000419528		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000428677		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000433804		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000481855		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000400412		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000400406		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000383527		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000470755		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000447252		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000452333		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000416392		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5UTR-intron	ENST00000373822	ENST00000467461		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-3CDS	ENST00000373821	ENST00000396268		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-3CDS	ENST00000373821	ENST00000376266		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-3CDS	ENST00000373821	ENST00000396263		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-3CDS	ENST00000373821	ENST00000451521		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000480060		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000416163		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000400351		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000425620		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000466904		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000400352		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000414614		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000383341		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000474554		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000419528		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000428677		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000433804		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000481855		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000400412		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000400406		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000383527		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000470755		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000447252		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000452333		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000416392		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
intron-intron	ENST00000373821	ENST00000467461		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	SRPK1	chr6	35888245	-	CCHCR1	chr6	31111190	-
5CDS-5UTR	ENST00000323848	ENST00000427410		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000447388		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000425457		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000456393		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000372654		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000372653		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000372652		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000372651		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000440226		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000323848	ENST00000308733		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000323848	ENST00000483091		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000427410		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000447388		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000425457		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000456393		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000372654		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000372653		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000372652		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000372651		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000440226		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000447431	ENST00000308733		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000447431	ENST00000483091		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000427410		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000447388		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000425457		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000456393		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000372654		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000372653		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000372652		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000372651		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000440226		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-5UTR	ENST00000374389	ENST00000308733		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
5CDS-intron	ENST00000374389	ENST00000483091		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000427410		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000447388		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000425457		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000456393		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000372654		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000372653		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000372652		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000372651		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000440226		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-5UTR	ENST00000479034	ENST00000308733		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
3UTR-intron	ENST00000479034	ENST00000483091		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000427410		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000447388		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000425457		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000456393		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000372654		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000372653		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000372652		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000372651		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000440226		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-5UTR	ENST00000537199	ENST00000308733		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
intron-intron	ENST00000537199	ENST00000483091		TCGA	RV	PRAD	TCGA-HC-8262-01A	SRRM1	chr1	24972564	+	NFYC	chr1	41204508	+
In-frame	ENST00000415083	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000415083	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000415083	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000415083	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
Frame-shit	ENST00000542420	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000542420	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000542420	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000542420	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
Frame-shit	ENST00000542743	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000542743	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000542743	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000542743	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
Frame-shit	ENST00000539849	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000539849	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000539849	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000539849	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
In-frame	ENST00000269137	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000269137	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000269137	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000269137	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
In-frame	ENST00000545952	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000545952	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000545952	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000545952	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
intron-3CDS	ENST00000585241	ENST00000256935		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
intron-5UTR	ENST00000585241	ENST00000540750		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
intron-5UTR	ENST00000585241	ENST00000520908		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
intron-3UTR	ENST00000585241	ENST00000523351		TCGA	RV	PRAD	TCGA-HC-8265-01A	SS18	chr18	23612363	-	DOCK2	chr5	169267761	+
In-frame	ENST00000431877	ENST00000263708		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000431877	ENST00000544261		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000431877	ENST00000460162		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
In-frame	ENST00000320370	ENST00000263708		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000320370	ENST00000544261		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000320370	ENST00000460162		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
In-frame	ENST00000409001	ENST00000263708		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000409001	ENST00000544261		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000409001	ENST00000460162		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
In-frame	ENST00000428267	ENST00000263708		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000428267	ENST00000544261		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000428267	ENST00000460162		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
In-frame	ENST00000409136	ENST00000263708		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000409136	ENST00000544261		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
5CDS-intron	ENST00000409136	ENST00000460162		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
3UTR-3CDS	ENST00000467172	ENST00000263708		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
3UTR-intron	ENST00000467172	ENST00000544261		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
3UTR-intron	ENST00000467172	ENST00000460162		TCGA	RV	PRAD	TCGA-J4-A67T-01A	SSFA2	chr2	182787139	+	PTPN4	chr2	120620112	+
Frame-shit	ENST00000393446	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393446	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393446	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
5CDS-intron	ENST00000393446	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000265437	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000265437	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000265437	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
5CDS-intron	ENST00000265437	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393451	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393451	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393451	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
5CDS-intron	ENST00000393451	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393449	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393449	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000393449	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
5CDS-intron	ENST00000393449	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000323984	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000323984	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
Frame-shit	ENST00000323984	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
5CDS-intron	ENST00000323984	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000432298	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000432298	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000432298	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000432298	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000422922	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000422922	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000422922	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000422922	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000487459	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000487459	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000487459	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000487459	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393443	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393443	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393443	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000393443	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393447	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393447	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393447	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000393447	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393444	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393444	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000393444	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000393444	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000465133	ENST00000361183		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000465133	ENST00000458284		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-3CDS	ENST00000465133	ENST00000490693		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
intron-intron	ENST00000465133	ENST00000466023		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116528181	+
5CDS-3UTR	ENST00000336934	ENST00000477333		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000336934	ENST00000539231		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
5CDS-5UTR	ENST00000336934	ENST00000377687		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000255486	ENST00000477333		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000255486	ENST00000539231		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000255486	ENST00000377687		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000399365	ENST00000477333		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000399365	ENST00000539231		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000399365	ENST00000377687		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
5UTR-3UTR	ENST00000487412	ENST00000477333		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
5UTR-5UTR	ENST00000487412	ENST00000539231		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
5UTR-5UTR	ENST00000487412	ENST00000377687		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-3UTR	ENST00000439831	ENST00000477333		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000439831	ENST00000539231		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
intron-5UTR	ENST00000439831	ENST00000377687		TCGA	RV	PRAD	TCGA-HC-7233-01A	STARD13	chr13	33859607	-	KLF5	chr13	73635999	+
5CDS-intron	ENST00000522695	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000522695	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000522695	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000524300	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000524300	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000524300	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000523558	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000523558	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000523558	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000521210	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000521210	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000521210	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000355780	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000355780	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000355780	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000519961	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000519961	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000519961	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000521727	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000521727	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000521727	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000521451	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000521451	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000521451	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000522509	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000522509	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000522509	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000517542	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000517542	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-intron	ENST00000517542	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000524104	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000524104	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5CDS-intron	ENST00000524104	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000522962	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000522962	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000522962	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000521419	ENST00000262146		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000521419	ENST00000517944		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
5UTR-intron	ENST00000521419	ENST00000458689		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	STAU2	chr8	74650519	-	MTFR1	chr8	66631615	+
intron-3CDS	ENST00000539805	ENST00000284951		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
intron-3CDS	ENST00000539805	ENST00000378072		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
intron-5UTR	ENST00000539805	ENST00000486903		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
5UTR-3CDS	ENST00000480436	ENST00000284951		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
5UTR-3CDS	ENST00000480436	ENST00000378072		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
5UTR-5UTR	ENST00000480436	ENST00000486903		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
Frame-shit	ENST00000337743	ENST00000284951		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
Frame-shit	ENST00000337743	ENST00000378072		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
5CDS-5UTR	ENST00000337743	ENST00000486903		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
intron-3CDS	ENST00000544472	ENST00000284951		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
intron-3CDS	ENST00000544472	ENST00000378072		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
intron-5UTR	ENST00000544472	ENST00000486903		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	TASP1	chr20	13550154	-	SEL1L2	chr20	13912417	-
5CDS-5UTR	ENST00000545826	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000545826	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000545826	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000545826	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000545826	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000513237	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000513237	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000513237	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000513237	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000513237	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000540549	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000540549	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-5UTR	ENST00000540549	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000540549	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5CDS-intron	ENST00000540549	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000380013	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000380013	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000380013	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000380013	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000380013	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000305737	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000305737	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000305737	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000305737	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000305737	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000394764	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000394764	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000394764	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000394764	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000394764	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000504042	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000504042	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000504042	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000504042	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000504042	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000413648	ENST00000326003		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000413648	ENST00000597483		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-5UTR	ENST00000413648	ENST00000593997		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000413648	ENST00000595952		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
intron-intron	ENST00000413648	ENST00000360617		TCGA	RV	PRAD	TCGA-EJ-7794-01A	TET2	chr4	106200973	+	KLK3	chr19	51358191	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6373-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7747-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000274456	ENST00000398160		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000274456	ENST00000398169		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000274456	ENST00000358932		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000274456	ENST00000437553		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-intron	ENST00000274456	ENST00000353689		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-intron	ENST00000274456	ENST00000398163		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000274456	ENST00000557114		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000513374	ENST00000398160		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000513374	ENST00000398169		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000513374	ENST00000358932		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000513374	ENST00000437553		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000513374	ENST00000353689		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000513374	ENST00000398163		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000513374	ENST00000557114		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504771	ENST00000398160		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504771	ENST00000398169		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504771	ENST00000358932		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504771	ENST00000437553		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000504771	ENST00000353689		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000504771	ENST00000398163		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504771	ENST00000557114		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000503646	ENST00000398160		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000503646	ENST00000398169		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000503646	ENST00000358932		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000503646	ENST00000437553		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000503646	ENST00000353689		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000503646	ENST00000398163		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000503646	ENST00000557114		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504642	ENST00000398160		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504642	ENST00000398169		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504642	ENST00000358932		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504642	ENST00000437553		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000504642	ENST00000353689		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000504642	ENST00000398163		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000504642	ENST00000557114		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000415806	ENST00000398160		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000415806	ENST00000398169		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000415806	ENST00000358932		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000415806	ENST00000437553		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000415806	ENST00000353689		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-intron	ENST00000415806	ENST00000398163		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
intron-5UTR	ENST00000415806	ENST00000557114		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TNFAIP8	chr5	118604602	+	CCNB1IP1	chr14	20797532	-
5CDS-5UTR	ENST00000344204	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000344204	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000344204	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000344204	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000344204	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000537187	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000537187	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000537187	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000537187	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000537187	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000509967	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000509967	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-intron	ENST00000509967	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000509967	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
5CDS-5UTR	ENST00000509967	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000515710	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000515710	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-intron	ENST00000515710	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000515710	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000515710	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000344135	ENST00000308448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000344135	ENST00000328142		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-intron	ENST00000344135	ENST00000400215		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000344135	ENST00000541004		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000344135	ENST00000495903		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TRIO	chr5	14381361	+	ATAD1	chr10	89574369	-
In-frame	ENST00000317907	ENST00000295373		TCGA	RV	PRAD	TCGA-CH-5751-01A	TTC27	chr2	33012216	+	DHX57	chr2	39041037	-
5CDS-intron	ENST00000317907	ENST00000479345		TCGA	RV	PRAD	TCGA-CH-5751-01A	TTC27	chr2	33012216	+	DHX57	chr2	39041037	-
intron-3CDS	ENST00000556922	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000556922	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000556922	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000556922	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000554444	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000554444	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000554444	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000554444	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000315491	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000315491	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000315491	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000315491	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
3UTR-3CDS	ENST00000554116	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
3UTR-3CDS	ENST00000554116	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
3UTR-3CDS	ENST00000554116	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
3UTR-3CDS	ENST00000554116	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000555576	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000555576	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000555576	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000555576	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000554336	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000554336	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000554336	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000554336	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000553967	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000553967	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000553967	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
Frame-shit	ENST00000553967	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000304984	ENST00000155858		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000304984	ENST00000452833		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000304984	ENST00000533060		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
intron-3CDS	ENST00000304984	ENST00000528453		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	TUBB3	chr16	89989866	+	TRPM5	chr11	2439821	-
In-frame	ENST00000373382	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000373382	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000373382	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000373382	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000373382	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000263559	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000263559	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000263559	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000263559	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000263559	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000395098	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000395098	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000395098	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000395098	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000395098	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000546041	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000546041	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000546041	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000546041	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000546041	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
intron-3CDS	ENST00000490696	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
intron-3CDS	ENST00000490696	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
intron-3CDS	ENST00000490696	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
intron-intron	ENST00000490696	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
intron-intron	ENST00000490696	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000541711	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000541711	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000541711	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000541711	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000541711	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000489794	ENST00000371839		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000489794	ENST00000371838		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
In-frame	ENST00000489794	ENST00000371836		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000489794	ENST00000334103		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
5CDS-intron	ENST00000489794	ENST00000497451		TCGA	RV	PRAD	TCGA-ZG-A8QW-01A	VPS26A	chr10	70917967	+	AGBL4	chr1	49511472	-
3UTR-3UTR	ENST00000494757	ENST00000591972		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
3UTR-5UTR	ENST00000494757	ENST00000589683		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
3UTR-5UTR	ENST00000494757	ENST00000253796		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
3UTR-5UTR	ENST00000494757	ENST00000587142		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
3UTR-5UTR	ENST00000494757	ENST00000588576		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-3UTR	ENST00000323571	ENST00000591972		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000323571	ENST00000589683		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000323571	ENST00000253796		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000323571	ENST00000587142		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000323571	ENST00000588576		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-3UTR	ENST00000585043	ENST00000591972		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000585043	ENST00000589683		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000585043	ENST00000253796		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000585043	ENST00000587142		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000585043	ENST00000588576		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-3UTR	ENST00000394103	ENST00000591972		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000394103	ENST00000589683		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000394103	ENST00000253796		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000394103	ENST00000587142		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000394103	ENST00000588576		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-3UTR	ENST00000536600	ENST00000591972		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000536600	ENST00000589683		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000536600	ENST00000253796		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000536600	ENST00000587142		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5UTR-5UTR	ENST00000536600	ENST00000588576		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
intron-3UTR	ENST00000583130	ENST00000591972		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
intron-5UTR	ENST00000583130	ENST00000589683		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
intron-5UTR	ENST00000583130	ENST00000253796		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
intron-5UTR	ENST00000583130	ENST00000587142		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
intron-5UTR	ENST00000583130	ENST00000588576		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40913852	+
5CDS-5UTR	ENST00000334512	ENST00000275884		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
5CDS-5UTR	ENST00000334512	ENST00000537639		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
5CDS-5UTR	ENST00000334512	ENST00000496613		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
5CDS-5UTR	ENST00000334512	ENST00000492720		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000478357	ENST00000275884		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000478357	ENST00000537639		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000478357	ENST00000496613		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000478357	ENST00000492720		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000446377	ENST00000275884		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000446377	ENST00000537639		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000446377	ENST00000496613		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000446377	ENST00000492720		TCGA	RV	PRAD	TCGA-CH-5752-01A	ZMIZ1	chr10	80976031	+	DENND2A	chr7	140302342	-
Frame-shit	ENST00000334512	ENST00000372336		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZMIZ1	chr10	80976031	+	ZCCHC24	chr10	81192514	-
In-frame	ENST00000334512	ENST00000372333		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZMIZ1	chr10	80976031	+	ZCCHC24	chr10	81192514	-
intron-3CDS	ENST00000478357	ENST00000372336		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZMIZ1	chr10	80976031	+	ZCCHC24	chr10	81192514	-
intron-3CDS	ENST00000478357	ENST00000372333		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZMIZ1	chr10	80976031	+	ZCCHC24	chr10	81192514	-
intron-3CDS	ENST00000446377	ENST00000372336		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZMIZ1	chr10	80976031	+	ZCCHC24	chr10	81192514	-
intron-3CDS	ENST00000446377	ENST00000372333		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZMIZ1	chr10	80976031	+	ZCCHC24	chr10	81192514	-
In-frame	ENST00000399410	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000399410	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000399410	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000399410	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000349029	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000349029	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000349029	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000349029	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000351154	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000351154	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000351154	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000351154	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000399408	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000399408	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000399408	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000399408	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000345148	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000345148	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000345148	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000345148	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000346370	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
In-frame	ENST00000346370	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000346370	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5CDS-intron	ENST00000346370	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000576557	ENST00000321728		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
intron-3CDS	ENST00000576557	ENST00000303531		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
intron-intron	ENST00000576557	ENST00000482000		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
intron-intron	ENST00000576557	ENST00000498058		TCGA	RV	PRAD	TCGA-KK-A8I7-01A	ABCC1	chr16	16184445	+	PRKCB	chr16	23999829	+
5UTR-intron	ENST00000219151	ENST00000261383		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5UTR-intron	ENST00000219151	ENST00000415178		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5UTR-intron	ENST00000219151	ENST00000575491		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000307493	ENST00000261383		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000307493	ENST00000415178		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000307493	ENST00000575491		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000520010	ENST00000261383		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000520010	ENST00000415178		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
5CDS-intron	ENST00000520010	ENST00000575491		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ACSM1	chr16	20681149	-	DNAH3	chr16	21128660	-
intron-intron	ENST00000464611	ENST00000514455		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000511566		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000376817		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000464611	ENST00000512805		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000504726		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000511900		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000456394		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000505461		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000514455		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000511566		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000376817		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000331789	ENST00000512805		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000504726		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000511900		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000456394		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000505461		TCGA	RV	PRAD	TCGA-HC-A632-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-3CDS	ENST00000535787	ENST00000336199		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000535787	ENST00000366540		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000535787	ENST00000366539		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000535787	ENST00000263826		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-intron	ENST00000535787	ENST00000492957		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000241416	ENST00000336199		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000241416	ENST00000366540		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000241416	ENST00000366539		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000241416	ENST00000263826		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
5CDS-intron	ENST00000241416	ENST00000492957		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000404590	ENST00000336199		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000404590	ENST00000366540		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000404590	ENST00000366539		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000404590	ENST00000263826		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
5CDS-intron	ENST00000404590	ENST00000492957		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000495775	ENST00000336199		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000495775	ENST00000366540		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000495775	ENST00000366539		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-3CDS	ENST00000495775	ENST00000263826		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
intron-intron	ENST00000495775	ENST00000492957		TCGA	RV	PRAD	TCGA-G9-6348-01A	ACVR2A	chr2	148602776	+	AKT3	chr1	243828185	-
In-frame	ENST00000539909	ENST00000404771		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000372440		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000372443		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000286628		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000286627		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000354353		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000404857		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000539909	ENST00000406533		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000539909	ENST00000484507		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000539909	ENST00000481070		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000539909	ENST00000480683		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000404771		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000372440		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000372443		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000286628		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000286627		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000354353		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000404857		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000286621	ENST00000406533		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000286621	ENST00000484507		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000286621	ENST00000481070		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000286621	ENST00000480683		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000404771		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000372440		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000372443		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000286628		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000286627		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000354353		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000404857		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
In-frame	ENST00000372734	ENST00000406533		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000372734	ENST00000484507		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000372734	ENST00000481070		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
5CDS-intron	ENST00000372734	ENST00000480683		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000404771		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000372440		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000372443		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000286628		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000286627		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000354353		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000404857		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000541550	ENST00000406533		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000541550	ENST00000484507		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000541550	ENST00000481070		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000541550	ENST00000480683		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000404771		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000372440		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000372443		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000286628		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000286627		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000354353		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000404857		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-3CDS	ENST00000467840	ENST00000406533		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000467840	ENST00000484507		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000467840	ENST00000481070		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
intron-intron	ENST00000467840	ENST00000480683		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ADK	chr10	75984349	+	KCNMA1	chr10	78778857	-
Frame-shit	ENST00000324198	ENST00000544604		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ADRBK2	chr22	25961120	+	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000324198	ENST00000332811		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ADRBK2	chr22	25961120	+	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000324198	ENST00000402174		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ADRBK2	chr22	25961120	+	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000324198	ENST00000406323		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ADRBK2	chr22	25961120	+	ZNRF3	chr22	29383064	+
Frame-shit	ENST00000455511	ENST00000553106		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
Frame-shit	ENST00000455511	ENST00000307000		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
5CDS-5UTR	ENST00000455511	ENST00000551988		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
intron-3CDS	ENST00000481473	ENST00000553106		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
intron-3CDS	ENST00000481473	ENST00000307000		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
intron-5UTR	ENST00000481473	ENST00000551988		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
Frame-shit	ENST00000450008	ENST00000553106		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
Frame-shit	ENST00000450008	ENST00000307000		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
5CDS-5UTR	ENST00000450008	ENST00000551988		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	ANAPC7	chr12	110841332	-	PAH	chr12	103271328	-
In-frame	ENST00000280772	ENST00000338981		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
5CDS-3UTR	ENST00000280772	ENST00000426564		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
In-frame	ENST00000373827	ENST00000338981		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
5CDS-3UTR	ENST00000373827	ENST00000426564		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
In-frame	ENST00000355288	ENST00000338981		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
5CDS-3UTR	ENST00000355288	ENST00000426564		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
In-frame	ENST00000503366	ENST00000338981		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
5CDS-3UTR	ENST00000503366	ENST00000426564		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
intron-3CDS	ENST00000510382	ENST00000338981		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
intron-3UTR	ENST00000510382	ENST00000426564		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
intron-3CDS	ENST00000460468	ENST00000338981		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
intron-3UTR	ENST00000460468	ENST00000426564		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	ANK3	chr10	61815416	-	USP9Y	chrY	14968265	+
5UTR-3CDS	ENST00000356015	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000356015	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000356015	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-intron	ENST00000356015	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000432560	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000432560	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000432560	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-intron	ENST00000432560	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000357586	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000357586	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000357586	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-intron	ENST00000357586	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000405198	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000405198	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000405198	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-intron	ENST00000405198	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000317368	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000317368	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-3CDS	ENST00000317368	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5UTR-intron	ENST00000317368	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000402502	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000402502	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000402502	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-intron	ENST00000402502	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000415447	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000415447	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000415447	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-intron	ENST00000415447	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000472057	ENST00000353891		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000472057	ENST00000263200		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-3CDS	ENST00000472057	ENST00000427926		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
intron-intron	ENST00000472057	ENST00000442042		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP1B1	chr22	29784413	-	CLTCL1	chr22	19222229	-
5CDS-intron	ENST00000431231	ENST00000448803		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000546148		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000334141		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000358472		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000379358		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000327179		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000541040		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000538076		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000485222		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000431231	ENST00000303310		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000448803		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000546148		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000334141		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000358472		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000379358		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000327179		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000541040		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000538076		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000485222		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5CDS-intron	ENST00000437668	ENST00000303310		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000448803		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000546148		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000334141		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000358472		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000379358		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000327179		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000541040		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000538076		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000485222		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
intron-intron	ENST00000582409	ENST00000303310		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000448803		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000546148		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000334141		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000358472		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000379358		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000327179		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000541040		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000538076		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000485222		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
5UTR-intron	ENST00000443378	ENST00000303310		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	ARHGAP23	chr17	36617176	+	ZSCAN2	chr15	85159540	+
In-frame	ENST00000310343	ENST00000358825		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000310343	ENST00000304538		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000310343	ENST00000360871		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000310343	ENST00000423662		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000310343	ENST00000528746		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000310343	ENST00000526082		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
In-frame	ENST00000524655	ENST00000358825		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000524655	ENST00000304538		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000524655	ENST00000360871		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000524655	ENST00000423662		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000524655	ENST00000528746		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5CDS-intron	ENST00000524655	ENST00000526082		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-3CDS	ENST00000392657	ENST00000358825		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000392657	ENST00000304538		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000392657	ENST00000360871		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000392657	ENST00000423662		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000392657	ENST00000528746		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000392657	ENST00000526082		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-3CDS	ENST00000527272	ENST00000358825		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000527272	ENST00000304538		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000527272	ENST00000360871		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000527272	ENST00000423662		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000527272	ENST00000528746		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
intron-intron	ENST00000527272	ENST00000526082		TCGA	RV	PRAD	TCGA-YL-A8SK-01B	ARHGAP32	chr11	128963516	-	PRDM10	chr11	129782120	-
5UTR-5UTR	ENST00000432884	ENST00000236192		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000432884	ENST00000415773		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000432884	ENST00000367740		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000432884	ENST00000482519		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000262942	ENST00000236192		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000262942	ENST00000415773		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000262942	ENST00000367740		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5UTR-5UTR	ENST00000262942	ENST00000482519		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
intron-5UTR	ENST00000471960	ENST00000236192		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
intron-5UTR	ENST00000471960	ENST00000415773		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
intron-5UTR	ENST00000471960	ENST00000367740		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
intron-5UTR	ENST00000471960	ENST00000482519		TCGA	RV	PRAD	TCGA-YL-A8SJ-01B	ARPC1A	chr7	98923627	+	VAMP4	chr1	171707603	-
5CDS-5UTR	ENST00000332783	ENST00000469379		TCGA	RV	PRAD	TCGA-EJ-5498-01A	ASB7	chr15	101152632	+	DEXI	chr16	11023416	-
5CDS-3UTR	ENST00000332783	ENST00000331808		TCGA	RV	PRAD	TCGA-EJ-5498-01A	ASB7	chr15	101152632	+	DEXI	chr16	11023416	-
5CDS-5UTR	ENST00000558747	ENST00000469379		TCGA	RV	PRAD	TCGA-EJ-5498-01A	ASB7	chr15	101152632	+	DEXI	chr16	11023416	-
5CDS-3UTR	ENST00000558747	ENST00000331808		TCGA	RV	PRAD	TCGA-EJ-5498-01A	ASB7	chr15	101152632	+	DEXI	chr16	11023416	-
5CDS-5UTR	ENST00000343276	ENST00000469379		TCGA	RV	PRAD	TCGA-EJ-5498-01A	ASB7	chr15	101152632	+	DEXI	chr16	11023416	-
5CDS-3UTR	ENST00000343276	ENST00000331808		TCGA	RV	PRAD	TCGA-EJ-5498-01A	ASB7	chr15	101152632	+	DEXI	chr16	11023416	-
5CDS-5UTR	ENST00000368346	ENST00000366978		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000368346	ENST00000366977		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000368346	ENST00000422588		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000368346	ENST00000366975		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000368346	ENST00000366976		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000368346	ENST00000473995		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000392403	ENST00000366978		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000392403	ENST00000366977		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000392403	ENST00000422588		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000392403	ENST00000366975		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000392403	ENST00000366976		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000392403	ENST00000473995		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000548830	ENST00000366978		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000548830	ENST00000366977		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000548830	ENST00000422588		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000548830	ENST00000366975		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000548830	ENST00000366976		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
5CDS-5UTR	ENST00000548830	ENST00000473995		TCGA	RV	PRAD	TCGA-EJ-5518-01A	ASH1L	chr1	155490891	-	NSL1	chr1	212960979	-
In-frame	ENST00000378618	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378618	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378618	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378618	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378618	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
5CDS-intron	ENST00000378618	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000536126	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000536126	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000536126	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000536126	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000536126	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
5CDS-intron	ENST00000536126	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000278460	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000278460	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000278460	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000278460	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000278460	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
5CDS-intron	ENST00000278460	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
Frame-shit	ENST00000395460	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
Frame-shit	ENST00000395460	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
Frame-shit	ENST00000395460	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
Frame-shit	ENST00000395460	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
Frame-shit	ENST00000395460	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
5CDS-intron	ENST00000395460	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378615	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378615	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378615	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378615	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000378615	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
5CDS-intron	ENST00000378615	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000543718	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000543718	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000543718	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000543718	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
In-frame	ENST00000543718	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
5CDS-intron	ENST00000543718	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
intron-3CDS	ENST00000527268	ENST00000324932		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
intron-3CDS	ENST00000527268	ENST00000359171		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
intron-3CDS	ENST00000527268	ENST00000355260		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
intron-3CDS	ENST00000527268	ENST00000397004		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
intron-3CDS	ENST00000527268	ENST00000397007		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
intron-intron	ENST00000527268	ENST00000488828		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	C11orf49	chr11	47182741	+	NUP98	chr11	3735225	-
Frame-shit	ENST00000452722	ENST00000260197		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000452722	ENST00000532451		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000452722	ENST00000525532		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000452722	ENST00000532694		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000452722	ENST00000534286		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000452722	ENST00000527934		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5UTR-3CDS	ENST00000537140	ENST00000260197		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000537140	ENST00000532451		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000537140	ENST00000525532		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000537140	ENST00000532694		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000537140	ENST00000534286		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5UTR-intron	ENST00000537140	ENST00000527934		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
Frame-shit	ENST00000542447	ENST00000260197		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000542447	ENST00000532451		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000542447	ENST00000525532		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000542447	ENST00000532694		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000542447	ENST00000534286		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000542447	ENST00000527934		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
Frame-shit	ENST00000537058	ENST00000260197		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000537058	ENST00000532451		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000537058	ENST00000525532		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000537058	ENST00000532694		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000537058	ENST00000534286		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000537058	ENST00000527934		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
Frame-shit	ENST00000536727	ENST00000260197		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000536727	ENST00000532451		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000536727	ENST00000525532		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000536727	ENST00000532694		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000536727	ENST00000534286		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000536727	ENST00000527934		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
Frame-shit	ENST00000331581	ENST00000260197		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000331581	ENST00000532451		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000331581	ENST00000525532		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000331581	ENST00000532694		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000331581	ENST00000534286		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
5CDS-intron	ENST00000331581	ENST00000527934		TCGA	RV	PRAD	TCGA-CH-5739-01A	CADM1	chr11	115374989	-	SORL1	chr11	121424646	+
In-frame	ENST00000392474	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000538733	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000337174	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000347034	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000324774	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-3CDS	ENST00000545538	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
Frame-shit	ENST00000412367	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000412367	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
Frame-shit	ENST00000404169	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000404169	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
Frame-shit	ENST00000402834	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000402834	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000446440	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000446440	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000392473	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000392473	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-3CDS	ENST00000535524	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A46B-01A	CAMKK2	chr12	121707331	-	KDM2B	chr12	121932468	-
In-frame	ENST00000261769	ENST00000261180		TCGA	RV	PRAD	TCGA-VP-A879-01A	CDH1	chr16	68835796	+	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000261769	ENST00000549138		TCGA	RV	PRAD	TCGA-VP-A879-01A	CDH1	chr16	68835796	+	TRHDE	chr12	72771775	+
In-frame	ENST00000422392	ENST00000261180		TCGA	RV	PRAD	TCGA-VP-A879-01A	CDH1	chr16	68835796	+	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000422392	ENST00000549138		TCGA	RV	PRAD	TCGA-VP-A879-01A	CDH1	chr16	68835796	+	TRHDE	chr12	72771775	+
3UTR-3CDS	ENST00000562836	ENST00000261180		TCGA	RV	PRAD	TCGA-VP-A879-01A	CDH1	chr16	68835796	+	TRHDE	chr12	72771775	+
3UTR-intron	ENST00000562836	ENST00000549138		TCGA	RV	PRAD	TCGA-VP-A879-01A	CDH1	chr16	68835796	+	TRHDE	chr12	72771775	+
5CDS-5UTR	ENST00000290913	ENST00000360772		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000290913	ENST00000359169		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000290913	ENST00000360304		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000290913	ENST00000418370		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000290913	ENST00000578202		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000290913	ENST00000354792		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000290913	ENST00000346322		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000290913	ENST00000583087		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000290913	ENST00000475616		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000290913	ENST00000510775		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000508789	ENST00000360772		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000508789	ENST00000359169		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000508789	ENST00000360304		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000508789	ENST00000418370		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000508789	ENST00000578202		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000508789	ENST00000354792		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000508789	ENST00000346322		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000508789	ENST00000583087		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000508789	ENST00000475616		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-intron	ENST00000508789	ENST00000510775		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-5UTR	ENST00000515867	ENST00000360772		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-5UTR	ENST00000515867	ENST00000359169		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-5UTR	ENST00000515867	ENST00000360304		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-intron	ENST00000515867	ENST00000418370		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-intron	ENST00000515867	ENST00000578202		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-intron	ENST00000515867	ENST00000354792		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-5UTR	ENST00000515867	ENST00000346322		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-intron	ENST00000515867	ENST00000583087		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-intron	ENST00000515867	ENST00000475616		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
intron-intron	ENST00000515867	ENST00000510775		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHCHD6	chr3	126423242	+	MYLK	chr3	123550517	-
5CDS-5UTR	ENST00000468888	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000468888	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000468888	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000468888	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000468888	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000468888	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000468888	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000468888	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000468888	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000399362	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000399362	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000399362	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000399362	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000399362	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000399362	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000399362	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000399362	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000399362	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000539981	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000539981	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000539981	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000539981	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000539981	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000539981	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000539981	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000539981	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000539981	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000359576	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000359576	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000359576	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000359576	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000359576	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000359576	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000359576	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000359576	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000359576	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000307312	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000307312	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000307312	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000307312	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000307312	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000307312	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000307312	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000307312	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000307312	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000480013	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000480013	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000480013	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000480013	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000480013	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000480013	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000480013	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000480013	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000480013	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000461133	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000461133	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000461133	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000461133	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000461133	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000461133	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000461133	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000461133	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000461133	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000313350	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000313350	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000313350	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000313350	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000313350	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000313350	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000313350	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000313350	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000313350	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000487200	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000487200	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000487200	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000487200	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000487200	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000487200	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000487200	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000487200	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000487200	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000333778	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000333778	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000333778	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000333778	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000333778	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000333778	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000333778	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-intron	ENST00000333778	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000333778	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000482896	ENST00000406164		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000482896	ENST00000406824		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000482896	ENST00000339837		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000482896	ENST00000413939		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000482896	ENST00000296202		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000482896	ENST00000511444		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000482896	ENST00000512391		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000482896	ENST00000514703		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000482896	ENST00000507242		TCGA	RV	PRAD	TCGA-VP-A875-01A	CLASP2	chr3	33686249	-	NMNAT3	chr3	139297897	-
5CDS-5UTR	ENST00000508064	ENST00000359470		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207881608	+	C1orf116	chr1	207201024	-
5CDS-intron	ENST00000508064	ENST00000461135		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207881608	+	C1orf116	chr1	207201024	-
intron-5UTR	ENST00000530905	ENST00000359470		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207881608	+	C1orf116	chr1	207201024	-
intron-intron	ENST00000530905	ENST00000461135		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207881608	+	C1orf116	chr1	207201024	-
In-frame	ENST00000008527	ENST00000370549		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
In-frame	ENST00000008527	ENST00000370552		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
In-frame	ENST00000008527	ENST00000370546		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
In-frame	ENST00000008527	ENST00000404542		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
5UTR-3CDS	ENST00000550633	ENST00000370549		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
5UTR-3CDS	ENST00000550633	ENST00000370552		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
5UTR-3CDS	ENST00000550633	ENST00000370546		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
5UTR-3CDS	ENST00000550633	ENST00000404542		TCGA	RV	PRAD	TCGA-EJ-5527-01A	CRY1	chr12	107486582	-	HPSE2	chr10	100249953	-
intron-5UTR	ENST00000524630	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-5UTR	ENST00000524630	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-intron	ENST00000524630	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-5UTR	ENST00000529919	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-5UTR	ENST00000529919	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-intron	ENST00000529919	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-5UTR	ENST00000399039	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-5UTR	ENST00000399039	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
intron-intron	ENST00000399039	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000360682	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000360682	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000360682	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000361796	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000361796	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000361796	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000361391	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000361391	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000361391	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000530094	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000530094	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000530094	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000428599	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000428599	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000428599	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000361332	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000361332	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000361332	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000527467	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000527467	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000527467	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000415361	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000415361	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000415361	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532245	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532245	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000532245	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532463	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532463	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000532463	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000528232	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000528232	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000528232	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000529986	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000529986	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000529986	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000531014	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000531014	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000531014	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000358694	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000358694	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000358694	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000526772	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000526772	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000526772	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532787	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532787	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000532787	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000533667	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000533667	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000533667	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000529873	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000529873	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000529873	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000525902	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000525902	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000525902	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000529526	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000529526	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000529526	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532649	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532649	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000532649	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000426142	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000426142	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000426142	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532844	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000532844	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000532844	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000528621	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000528621	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000528621	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000399050	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000399050	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000399050	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000526357	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000526357	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000526357	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000530748	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000530748	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000530748	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000534579	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000534579	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000534579	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000526938	ENST00000532982		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-5UTR	ENST00000526938	ENST00000227451		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
5UTR-intron	ENST00000526938	ENST00000531902		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	CTNND1	chr11	57529518	+	DTX4	chr11	58949212	+
In-frame	ENST00000369681	ENST00000340366		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
In-frame	ENST00000369681	ENST00000297267		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
5CDS-intron	ENST00000369681	ENST00000480856		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
In-frame	ENST00000369679	ENST00000340366		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
In-frame	ENST00000369679	ENST00000297267		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
5CDS-intron	ENST00000369679	ENST00000480856		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
intron-3CDS	ENST00000479164	ENST00000340366		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
intron-3CDS	ENST00000479164	ENST00000297267		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
intron-intron	ENST00000479164	ENST00000480856		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	CYB5R4	chr6	84574047	+	FNDC1	chr6	159618463	+
In-frame	ENST00000322536	ENST00000396441		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000389707		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000401424		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000389708		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000361003		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000403290		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000403510		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000322536	ENST00000403482		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
5CDS-3UTR	ENST00000322536	ENST00000497429		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000396441		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000389707		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000401424		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000389708		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000361003		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000403290		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000403510		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
In-frame	ENST00000526794	ENST00000403482		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
5CDS-3UTR	ENST00000526794	ENST00000497429		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000396441		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000389707		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000401424		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000389708		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000361003		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000403290		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000403510		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3CDS	ENST00000534221	ENST00000403482		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
intron-3UTR	ENST00000534221	ENST00000497429		TCGA	RV	PRAD	TCGA-EJ-7321-01A	DDX10	chr11	108594189	+	ARNTL	chr11	13387047	+
5UTR-3CDS	ENST00000367549	ENST00000448150		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
5UTR-3CDS	ENST00000367549	ENST00000367649		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
5UTR-intron	ENST00000367549	ENST00000465723		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
5UTR-intron	ENST00000367549	ENST00000462775		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
intron-3CDS	ENST00000485081	ENST00000448150		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
intron-3CDS	ENST00000485081	ENST00000367649		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
intron-intron	ENST00000485081	ENST00000465723		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
intron-intron	ENST00000485081	ENST00000462775		TCGA	RV	PRAD	TCGA-G9-7522-01A	DHX9	chr1	182808591	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000315677	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000315677	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000581527	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000581527	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000400147	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000400147	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000400149	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000400149	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000400155	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000400155	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000400150	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000400150	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000584874	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000584874	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000534970	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000534970	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000539435	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000539435	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000581699	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000581699	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
Frame-shit	ENST00000400145	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000400145	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
In-frame	ENST00000515196	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5CDS-3UTR	ENST00000515196	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5UTR-3CDS	ENST00000478161	ENST00000300145		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
5UTR-3UTR	ENST00000478161	ENST00000546709		TCGA	RV	PRAD	TCGA-J4-A67L-01A	DLGAP1	chr18	3729135	-	XRCC6BP1	chr12	58350470	+
intron-intron	ENST00000442713	ENST00000592005		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
intron-5UTR	ENST00000442713	ENST00000245121		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
intron-5UTR	ENST00000442713	ENST00000356157		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-intron	ENST00000269445	ENST00000592005		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-5UTR	ENST00000269445	ENST00000245121		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-5UTR	ENST00000269445	ENST00000356157		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
intron-intron	ENST00000584977	ENST00000592005		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
intron-5UTR	ENST00000584977	ENST00000245121		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
intron-5UTR	ENST00000584977	ENST00000356157		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-intron	ENST00000578396	ENST00000592005		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-5UTR	ENST00000578396	ENST00000245121		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-5UTR	ENST00000578396	ENST00000356157		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	DYM	chr18	46889531	-	KATNAL2	chr18	44579251	+
5CDS-intron	ENST00000396842	ENST00000295989		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	EAF1	chr3	15469389	+	CAND2	chr3	12913235	+
5CDS-intron	ENST00000396842	ENST00000456430		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	EAF1	chr3	15469389	+	CAND2	chr3	12913235	+
5CDS-intron	ENST00000396842	ENST00000466558		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	EAF1	chr3	15469389	+	CAND2	chr3	12913235	+
5UTR-intron	ENST00000432764	ENST00000295989		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	EAF1	chr3	15469389	+	CAND2	chr3	12913235	+
5UTR-intron	ENST00000432764	ENST00000456430		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	EAF1	chr3	15469389	+	CAND2	chr3	12913235	+
5UTR-intron	ENST00000432764	ENST00000466558		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	EAF1	chr3	15469389	+	CAND2	chr3	12913235	+
5CDS-5UTR	ENST00000289081	ENST00000375715		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
5CDS-5UTR	ENST00000289081	ENST00000375708		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
5CDS-5UTR	ENST00000289081	ENST00000550066		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
5CDS-5UTR	ENST00000375305	ENST00000375715		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
5CDS-5UTR	ENST00000375305	ENST00000375708		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
5CDS-5UTR	ENST00000375305	ENST00000550066		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
intron-5UTR	ENST00000464653	ENST00000375715		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
intron-5UTR	ENST00000464653	ENST00000375708		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
intron-5UTR	ENST00000464653	ENST00000550066		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FANCC	chr9	98002931	-	ROR2	chr9	94538100	-
intron-3CDS	ENST00000402508	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000402508	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000402508	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000402508	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-intron	ENST00000402508	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
Frame-shit	ENST00000403359	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
Frame-shit	ENST00000403359	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
Frame-shit	ENST00000403359	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
Frame-shit	ENST00000403359	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5CDS-intron	ENST00000403359	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000316377	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000316377	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000316377	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000316377	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-intron	ENST00000316377	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000480038	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000480038	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000480038	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000480038	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-intron	ENST00000480038	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000378314	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000378314	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000378314	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000378314	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-intron	ENST00000378314	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000405808	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000405808	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000405808	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000405808	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-intron	ENST00000405808	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000434523	ENST00000521022		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000434523	ENST00000416984		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000434523	ENST00000521777		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-3CDS	ENST00000434523	ENST00000397363		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
intron-intron	ENST00000434523	ENST00000521070		TCGA	RV	PRAD	TCGA-VP-A87D-01A	FBXO11	chr2	48132628	-	INTS9	chr8	28671129	-
5UTR-3CDS	ENST00000393500	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
5UTR-3CDS	ENST00000393500	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393494	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393494	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000403559	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000403559	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000408937	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000408937	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000350908	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000350908	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393498	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393498	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393489	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393489	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393491	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000393491	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000459666	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000459666	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000378237	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000378237	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000360232	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000360232	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000390668	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000390668	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000462331	ENST00000331161		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
intron-3CDS	ENST00000462331	ENST00000376363		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	FOXP2	chr7	114006695	+	ENKUR	chr10	25288475	-
In-frame	ENST00000311550	ENST00000346128		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000311550	ENST00000400011		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000311550	ENST00000356107		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000311550	ENST00000545208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000311550	ENST00000495972		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000541819	ENST00000346128		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000541819	ENST00000400011		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000541819	ENST00000356107		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000541819	ENST00000545208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000541819	ENST00000495972		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000299267	ENST00000346128		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000299267	ENST00000400011		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000299267	ENST00000356107		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000299267	ENST00000545208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
In-frame	ENST00000299267	ENST00000495972		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000400188	ENST00000346128		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000400188	ENST00000400011		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000400188	ENST00000356107		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000400188	ENST00000545208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000400188	ENST00000495972		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000545868	ENST00000346128		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000545868	ENST00000400011		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000545868	ENST00000356107		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000545868	ENST00000545208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
intron-3CDS	ENST00000545868	ENST00000495972		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
5UTR-3CDS	ENST00000557641	ENST00000346128		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
5UTR-3CDS	ENST00000557641	ENST00000400011		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
5UTR-3CDS	ENST00000557641	ENST00000356107		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
5UTR-3CDS	ENST00000557641	ENST00000545208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
5UTR-3CDS	ENST00000557641	ENST00000495972		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GABRB3	chr15	27017549	-	TJP1	chr15	30092905	-
Frame-shit	ENST00000446778	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5CDS-intron	ENST00000446778	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5CDS-intron	ENST00000446778	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5CDS-3UTR	ENST00000446778	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
Frame-shit	ENST00000322090	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5CDS-intron	ENST00000322090	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5CDS-intron	ENST00000322090	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5CDS-3UTR	ENST00000322090	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
intron-3CDS	ENST00000487370	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
intron-intron	ENST00000487370	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
intron-intron	ENST00000487370	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
intron-3UTR	ENST00000487370	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	GBAS	chr7	56032394	+	PHYHIPL	chr10	60998348	+
5UTR-3CDS	ENST00000369443	ENST00000466548		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369443	ENST00000418532		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369443	ENST00000488699		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369443	ENST00000267219		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369443	ENST00000351546		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-intron	ENST00000369443	ENST00000465831		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-intron	ENST00000369443	ENST00000314070		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-intron	ENST00000369443	ENST00000358679		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369442	ENST00000466548		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369442	ENST00000418532		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369442	ENST00000488699		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369442	ENST00000267219		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000369442	ENST00000351546		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-intron	ENST00000369442	ENST00000465831		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-intron	ENST00000369442	ENST00000314070		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-intron	ENST00000369442	ENST00000358679		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-3CDS	ENST00000464026	ENST00000466548		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-3CDS	ENST00000464026	ENST00000418532		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-3CDS	ENST00000464026	ENST00000488699		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-3CDS	ENST00000464026	ENST00000267219		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-3CDS	ENST00000464026	ENST00000351546		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-intron	ENST00000464026	ENST00000465831		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-intron	ENST00000464026	ENST00000314070		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
intron-intron	ENST00000464026	ENST00000358679		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	GDAP2	chr1	118472071	-	SLAIN1	chr13	78334963	+
5UTR-3CDS	ENST00000373566	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000373563	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000409480	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000409547	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
intron-3CDS	ENST00000409196	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000409451	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
3UTR-3CDS	ENST00000482666	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
intron-3CDS	ENST00000452341	ENST00000281924		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	GIGYF2	chr2	233568199	+	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000434000	ENST00000372538		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
5UTR-5UTR	ENST00000434000	ENST00000460899		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
Frame-shit	ENST00000591680	ENST00000372538		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
5CDS-5UTR	ENST00000591680	ENST00000460899		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
intron-3CDS	ENST00000586265	ENST00000372538		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
intron-5UTR	ENST00000586265	ENST00000460899		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
Frame-shit	ENST00000592154	ENST00000372538		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
5CDS-5UTR	ENST00000592154	ENST00000460899		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
Frame-shit	ENST00000588554	ENST00000372538		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
5CDS-5UTR	ENST00000588554	ENST00000460899		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	GPATCH8	chr17	42580694	-	COMTD1	chr10	76994501	-
Frame-shit	ENST00000290795	ENST00000372759		TCGA	RV	PRAD	TCGA-CH-5788-01A	GPBP1L1	chr1	46120215	-	ZMPSTE24	chr1	40733458	+
5CDS-intron	ENST00000290795	ENST00000479131		TCGA	RV	PRAD	TCGA-CH-5788-01A	GPBP1L1	chr1	46120215	-	ZMPSTE24	chr1	40733458	+
Frame-shit	ENST00000355105	ENST00000372759		TCGA	RV	PRAD	TCGA-CH-5788-01A	GPBP1L1	chr1	46120215	-	ZMPSTE24	chr1	40733458	+
5CDS-intron	ENST00000355105	ENST00000479131		TCGA	RV	PRAD	TCGA-CH-5788-01A	GPBP1L1	chr1	46120215	-	ZMPSTE24	chr1	40733458	+
intron-3CDS	ENST00000479235	ENST00000372759		TCGA	RV	PRAD	TCGA-CH-5788-01A	GPBP1L1	chr1	46120215	-	ZMPSTE24	chr1	40733458	+
intron-intron	ENST00000479235	ENST00000479131		TCGA	RV	PRAD	TCGA-CH-5788-01A	GPBP1L1	chr1	46120215	-	ZMPSTE24	chr1	40733458	+
5CDS-intron	ENST00000392627	ENST00000466411		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000392627	ENST00000435050		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000392627	ENST00000431918		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000392627	ENST00000340958		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-intron	ENST00000342648	ENST00000466411		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000342648	ENST00000435050		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000342648	ENST00000431918		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000342648	ENST00000340958		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-intron	ENST00000481232	ENST00000466411		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000481232	ENST00000435050		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000481232	ENST00000431918		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000481232	ENST00000340958		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-intron	ENST00000392629	ENST00000466411		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000392629	ENST00000435050		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000392629	ENST00000431918		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000392629	ENST00000340958		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-intron	ENST00000582873	ENST00000466411		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000582873	ENST00000435050		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000582873	ENST00000431918		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000582873	ENST00000340958		TCGA	RV	PRAD	TCGA-CH-5766-01A	GPRC5C	chr17	72443568	+	CLDN4	chr7	73245193	+
Frame-shit	ENST00000251808	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
Frame-shit	ENST00000251808	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
Frame-shit	ENST00000251808	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000251808	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-intron	ENST00000251808	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
Frame-shit	ENST00000395927	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
Frame-shit	ENST00000395927	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
Frame-shit	ENST00000395927	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000395927	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
5CDS-intron	ENST00000395927	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-3CDS	ENST00000517674	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-3CDS	ENST00000517674	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-3CDS	ENST00000517674	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-5UTR	ENST00000517674	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
intron-intron	ENST00000517674	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9OT-01A	GRHL2	chr8	102571040	+	ERG	chr21	39795483	-
Frame-shit	ENST00000264235	ENST00000539563		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
Frame-shit	ENST00000264235	ENST00000490035		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
5CDS-5UTR	ENST00000264235	ENST00000498645		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
Frame-shit	ENST00000316626	ENST00000539563		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
Frame-shit	ENST00000316626	ENST00000490035		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
5CDS-5UTR	ENST00000316626	ENST00000498645		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000473886	ENST00000539563		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000473886	ENST00000490035		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000473886	ENST00000498645		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	GSK3B	chr3	119666115	-	LSAMP	chr3	115738487	-
In-frame	ENST00000216271	ENST00000373764		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5CDS-intron	ENST00000216271	ENST00000536616		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5CDS-3UTR	ENST00000216271	ENST00000486801		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
In-frame	ENST00000448072	ENST00000373764		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5CDS-intron	ENST00000448072	ENST00000536616		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5CDS-3UTR	ENST00000448072	ENST00000486801		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5UTR-3CDS	ENST00000498366	ENST00000373764		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5UTR-intron	ENST00000498366	ENST00000536616		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5UTR-3UTR	ENST00000498366	ENST00000486801		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
In-frame	ENST00000349505	ENST00000373764		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5CDS-intron	ENST00000349505	ENST00000536616		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5CDS-3UTR	ENST00000349505	ENST00000486801		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	HDAC10	chr22	50685108	-	MORN5	chr9	124962164	+
5UTR-3CDS	ENST00000443617	ENST00000396526		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	HERC1	chr15	64126026	-	SNX6	chr14	35032381	-
5UTR-3CDS	ENST00000443617	ENST00000396534		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	HERC1	chr15	64126026	-	SNX6	chr14	35032381	-
5UTR-3CDS	ENST00000443617	ENST00000362031		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	HERC1	chr15	64126026	-	SNX6	chr14	35032381	-
5UTR-3CDS	ENST00000443617	ENST00000355110		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	HERC1	chr15	64126026	-	SNX6	chr14	35032381	-
Frame-shit	ENST00000367739	ENST00000320876		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
Frame-shit	ENST00000367739	ENST00000261598		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5CDS-intron	ENST00000367739	ENST00000609587		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
intron-3CDS	ENST00000543628	ENST00000320876		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
intron-3CDS	ENST00000543628	ENST00000261598		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
intron-intron	ENST00000543628	ENST00000609587		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5UTR-3CDS	ENST00000367735	ENST00000320876		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5UTR-3CDS	ENST00000367735	ENST00000261598		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5UTR-intron	ENST00000367735	ENST00000609587		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5UTR-3CDS	ENST00000478333	ENST00000320876		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5UTR-3CDS	ENST00000478333	ENST00000261598		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
5UTR-intron	ENST00000478333	ENST00000609587		TCGA	RV	PRAD	TCGA-VP-A875-01A	IFNGR1	chr6	137540380	-	SMCHD1	chr18	2760650	+
Frame-shit	ENST00000347300	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000347300	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000347300	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000296266	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000296266	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000296266	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000507564	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000507564	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000507564	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000431818	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000431818	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000431818	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000504021	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000504021	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000504021	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000349441	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000349441	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000349441	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000348417	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000348417	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000348417	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
Frame-shit	ENST00000440957	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000440957	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
5CDS-intron	ENST00000440957	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
intron-3CDS	ENST00000513932	ENST00000335272		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
intron-intron	ENST00000513932	ENST00000320996		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
intron-intron	ENST00000513932	ENST00000455418		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	IFT122	chr3	129183624	+	PITPNB	chr22	28250927	-
In-frame	ENST00000552912	ENST00000338432		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
In-frame	ENST00000552912	ENST00000377854		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
In-frame	ENST00000552912	ENST00000377848		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
5CDS-intron	ENST00000552912	ENST00000543080		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
5CDS-intron	ENST00000552912	ENST00000543201		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
In-frame	ENST00000242591	ENST00000338432		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
In-frame	ENST00000242591	ENST00000377854		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
In-frame	ENST00000242591	ENST00000377848		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
5CDS-intron	ENST00000242591	ENST00000543080		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
5CDS-intron	ENST00000242591	ENST00000543201		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-3CDS	ENST00000361948	ENST00000338432		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-3CDS	ENST00000361948	ENST00000377854		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-3CDS	ENST00000361948	ENST00000377848		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-intron	ENST00000361948	ENST00000543080		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-intron	ENST00000361948	ENST00000543201		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-3CDS	ENST00000549009	ENST00000338432		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-3CDS	ENST00000549009	ENST00000377854		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-3CDS	ENST00000549009	ENST00000377848		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-intron	ENST00000549009	ENST00000543080		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
intron-intron	ENST00000549009	ENST00000543201		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	IFT81	chr12	110647021	+	ACACB	chr12	109625804	+
5CDS-intron	ENST00000264741	ENST00000406590		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000264741	ENST00000570646		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-5UTR	ENST00000264741	ENST00000458134		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000264741	ENST00000219700		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000264741	ENST00000575120		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-3UTR	ENST00000264741	ENST00000574594		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000264741	ENST00000398595		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000264741	ENST00000414777		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000422441	ENST00000406590		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000422441	ENST00000570646		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-5UTR	ENST00000422441	ENST00000458134		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000422441	ENST00000219700		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000422441	ENST00000575120		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-3UTR	ENST00000422441	ENST00000574594		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000422441	ENST00000398595		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000422441	ENST00000414777		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ITGA9	chr3	37584076	+	HMOX2	chr16	4533638	+
5CDS-intron	ENST00000399262	ENST00000280772		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5CDS-intron	ENST00000399262	ENST00000373827		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5CDS-intron	ENST00000399262	ENST00000355288		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5CDS-intron	ENST00000399262	ENST00000503366		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5CDS-5UTR	ENST00000399262	ENST00000510382		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5CDS-intron	ENST00000399262	ENST00000460468		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
intron-intron	ENST00000402544	ENST00000280772		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
intron-intron	ENST00000402544	ENST00000373827		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
intron-intron	ENST00000402544	ENST00000355288		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
intron-intron	ENST00000402544	ENST00000503366		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
intron-5UTR	ENST00000402544	ENST00000510382		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
intron-intron	ENST00000402544	ENST00000460468		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000399251	ENST00000280772		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000399251	ENST00000373827		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000399251	ENST00000355288		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000399251	ENST00000503366		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-5UTR	ENST00000399251	ENST00000510382		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000399251	ENST00000460468		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000542921	ENST00000280772		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000542921	ENST00000373827		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000542921	ENST00000355288		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000542921	ENST00000503366		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-5UTR	ENST00000542921	ENST00000510382		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000542921	ENST00000460468		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000489372	ENST00000280772		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000489372	ENST00000373827		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000489372	ENST00000355288		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000489372	ENST00000503366		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-5UTR	ENST00000489372	ENST00000510382		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
5UTR-intron	ENST00000489372	ENST00000460468		TCGA	RV	PRAD	TCGA-J4-A83I-01A	JMJD1C	chr10	65024411	-	ANK3	chr10	62374982	-
Frame-shit	ENST00000409785	ENST00000233838		TCGA	RV	PRAD	TCGA-HC-A76X-01A	KCMF1	chr2	85198590	+	GGCX	chr2	85783383	-
Frame-shit	ENST00000409785	ENST00000430215		TCGA	RV	PRAD	TCGA-HC-A76X-01A	KCMF1	chr2	85198590	+	GGCX	chr2	85783383	-
5CDS-intron	ENST00000409785	ENST00000473665		TCGA	RV	PRAD	TCGA-HC-A76X-01A	KCMF1	chr2	85198590	+	GGCX	chr2	85783383	-
Frame-shit	ENST00000325321	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000325321	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000325321	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000325321	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000325321	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000391810	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000391810	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000391810	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000391810	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000391810	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000358049	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358049	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358049	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358049	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358049	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000597509	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000597509	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000597509	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000597509	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
intron-intron	ENST00000597509	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7230-01A	KLK2	chr19	51383822	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000313654	ENST00000342144		TCGA	RV	PRAD	TCGA-G9-6329-01A	LAMA3	chr18	21427632	+	COX8C	chr14	93814374	+
Frame-shit	ENST00000399516	ENST00000342144		TCGA	RV	PRAD	TCGA-G9-6329-01A	LAMA3	chr18	21427632	+	COX8C	chr14	93814374	+
intron-3CDS	ENST00000269217	ENST00000342144		TCGA	RV	PRAD	TCGA-G9-6329-01A	LAMA3	chr18	21427632	+	COX8C	chr14	93814374	+
intron-3CDS	ENST00000587184	ENST00000342144		TCGA	RV	PRAD	TCGA-G9-6329-01A	LAMA3	chr18	21427632	+	COX8C	chr14	93814374	+
intron-3CDS	ENST00000588770	ENST00000342144		TCGA	RV	PRAD	TCGA-G9-6329-01A	LAMA3	chr18	21427632	+	COX8C	chr14	93814374	+
Frame-shit	ENST00000299601	ENST00000316623		TCGA	RV	PRAD	TCGA-EJ-7783-01A	LEO1	chr15	52263885	-	FBN1	chr15	48830005	-
5CDS-intron	ENST00000299601	ENST00000561429		TCGA	RV	PRAD	TCGA-EJ-7783-01A	LEO1	chr15	52263885	-	FBN1	chr15	48830005	-
5CDS-intron	ENST00000299601	ENST00000560355		TCGA	RV	PRAD	TCGA-EJ-7783-01A	LEO1	chr15	52263885	-	FBN1	chr15	48830005	-
Frame-shit	ENST00000315141	ENST00000316623		TCGA	RV	PRAD	TCGA-EJ-7783-01A	LEO1	chr15	52263885	-	FBN1	chr15	48830005	-
5CDS-intron	ENST00000315141	ENST00000561429		TCGA	RV	PRAD	TCGA-EJ-7783-01A	LEO1	chr15	52263885	-	FBN1	chr15	48830005	-
5CDS-intron	ENST00000315141	ENST00000560355		TCGA	RV	PRAD	TCGA-EJ-7783-01A	LEO1	chr15	52263885	-	FBN1	chr15	48830005	-
In-frame	ENST00000157600	ENST00000354698		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000157600	ENST00000427617		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000157600	ENST00000412564		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000157600	ENST00000440261		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5CDS-3UTR	ENST00000157600	ENST00000454212		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000535732	ENST00000354698		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000535732	ENST00000427617		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000535732	ENST00000412564		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
In-frame	ENST00000535732	ENST00000440261		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5CDS-3UTR	ENST00000535732	ENST00000454212		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000454244	ENST00000354698		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000454244	ENST00000427617		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000454244	ENST00000412564		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000454244	ENST00000440261		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000454244	ENST00000454212		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000397386	ENST00000354698		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000397386	ENST00000427617		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000397386	ENST00000412564		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3CDS	ENST00000397386	ENST00000440261		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
5UTR-3UTR	ENST00000397386	ENST00000454212		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	LMCD1	chr3	8543666	+	ZNF589	chr3	48302303	+
Frame-shit	ENST00000273261	ENST00000493112		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
Frame-shit	ENST00000273261	ENST00000307227		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
5CDS-intron	ENST00000273261	ENST00000492795		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
Frame-shit	ENST00000383703	ENST00000493112		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
Frame-shit	ENST00000383703	ENST00000307227		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
5CDS-intron	ENST00000383703	ENST00000492795		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
intron-3CDS	ENST00000496559	ENST00000493112		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
intron-3CDS	ENST00000496559	ENST00000307227		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
intron-intron	ENST00000496559	ENST00000492795		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	LRIG1	chr3	66501983	-	SUCLG2	chr3	67451275	-
intron-intron	ENST00000395169	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395169	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395169	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395169	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395169	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395169	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395169	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395169	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395169	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000359221	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000359221	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000359221	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000359221	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000359221	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000359221	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000359221	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000359221	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000359221	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000361569	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000361569	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000361569	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000361569	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000361569	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000361569	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000361569	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000361569	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000361569	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395166	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395166	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395166	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395166	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395166	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395166	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395166	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395166	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395166	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-intron	ENST00000449047	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-intron	ENST00000449047	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-intron	ENST00000449047	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-5UTR	ENST00000449047	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-intron	ENST00000449047	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-intron	ENST00000449047	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-5UTR	ENST00000449047	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-5UTR	ENST00000449047	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5UTR-intron	ENST00000449047	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000395161	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000395161	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000395161	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000395161	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000395161	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000395161	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000395161	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-5UTR	ENST00000395161	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000395161	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000513839	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000513839	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000513839	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000513839	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000513839	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000513839	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000513839	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000513839	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000513839	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395157	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395157	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395157	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395157	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395157	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395157	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395157	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395157	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395157	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395160	ENST00000395002		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395160	ENST00000264344		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395160	ENST00000503556		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395160	ENST00000511976		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395160	ENST00000508369		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395160	ENST00000513837		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395160	ENST00000502459		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-5UTR	ENST00000395160	ENST00000509094		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
intron-intron	ENST00000395160	ENST00000515600		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	MAPK10	chr4	87115489	-	FAM13A	chr4	89859392	-
5CDS-intron	ENST00000369026	ENST00000374690		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
5CDS-intron	ENST00000369026	ENST00000513847		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
5CDS-intron	ENST00000369026	ENST00000504326		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
5CDS-intron	ENST00000369026	ENST00000396044		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
5CDS-intron	ENST00000369026	ENST00000396043		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000464132	ENST00000374690		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000464132	ENST00000513847		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000464132	ENST00000504326		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000464132	ENST00000396044		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000464132	ENST00000396043		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000307940	ENST00000374690		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000307940	ENST00000513847		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000307940	ENST00000504326		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000307940	ENST00000396044		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
intron-intron	ENST00000307940	ENST00000396043		TCGA	RV	PRAD	TCGA-HC-8265-01A	MCL1	chr1	150547032	-	AR	chrX	66914515	+
Frame-shit	ENST00000333130	ENST00000261226		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	MRPL40	chr22	19420871	+	TMCC3	chr12	94976314	-
5CDS-5UTR	ENST00000333130	ENST00000551457		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	MRPL40	chr22	19420871	+	TMCC3	chr12	94976314	-
5CDS-intron	ENST00000333130	ENST00000552239		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	MRPL40	chr22	19420871	+	TMCC3	chr12	94976314	-
3UTR-3CDS	ENST00000443660	ENST00000261226		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	MRPL40	chr22	19420871	+	TMCC3	chr12	94976314	-
3UTR-5UTR	ENST00000443660	ENST00000551457		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	MRPL40	chr22	19420871	+	TMCC3	chr12	94976314	-
3UTR-intron	ENST00000443660	ENST00000552239		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	MRPL40	chr22	19420871	+	TMCC3	chr12	94976314	-
In-frame	ENST00000258383	ENST00000398457		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000258383	ENST00000462050		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000258383	ENST00000347800		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000258383	ENST00000398449		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000258383	ENST00000361802		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-3UTR	ENST00000258383	ENST00000343687		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000258383	ENST00000398437		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000258383	ENST00000340588		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	MRPL44	chr2	224824719	+	ABCG1	chr21	43645781	+
5CDS-intron	ENST00000216181	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	MYH9	chr22	36677327	-	DDX21	chr10	70723858	+
intron-intron	ENST00000475726	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	MYH9	chr22	36677327	-	DDX21	chr10	70723858	+
intron-intron	ENST00000401701	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6371-01A	MYH9	chr22	36677327	-	DDX21	chr10	70723858	+
In-frame	ENST00000339514	ENST00000412704		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000339514	ENST00000376887		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000339514	ENST00000536256		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000339514	ENST00000431522		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-3UTR	ENST00000339514	ENST00000538287		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000339514	ENST00000474158		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000392318	ENST00000412704		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000392318	ENST00000376887		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000392318	ENST00000536256		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000392318	ENST00000431522		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-3UTR	ENST00000392318	ENST00000538287		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000392318	ENST00000474158		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000304164	ENST00000412704		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000304164	ENST00000376887		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000304164	ENST00000536256		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000304164	ENST00000431522		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-3UTR	ENST00000304164	ENST00000538287		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000304164	ENST00000474158		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000392316	ENST00000412704		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000392316	ENST00000376887		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000392316	ENST00000536256		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000392316	ENST00000431522		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-3UTR	ENST00000392316	ENST00000538287		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000392316	ENST00000474158		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000439065	ENST00000412704		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
In-frame	ENST00000439065	ENST00000376887		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000439065	ENST00000536256		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000439065	ENST00000431522		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-3UTR	ENST00000439065	ENST00000538287		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000439065	ENST00000474158		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
intron-3CDS	ENST00000496992	ENST00000412704		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
intron-3CDS	ENST00000496992	ENST00000376887		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
intron-intron	ENST00000496992	ENST00000536256		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
intron-intron	ENST00000496992	ENST00000431522		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
intron-3UTR	ENST00000496992	ENST00000538287		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
intron-intron	ENST00000496992	ENST00000474158		TCGA	RV	PRAD	TCGA-HC-7211-01A	MYO1B	chr2	192261223	+	ABCC4	chr13	95887088	-
5CDS-intron	ENST00000323851	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000323851	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000323851	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000323851	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000323851	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354944	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354944	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354944	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354944	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354944	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000521414	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000521414	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000521414	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000521414	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000521414	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000537882	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000537882	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000537882	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000537882	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000537882	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000414097	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000414097	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000414097	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000414097	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000414097	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518176	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518176	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518176	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518176	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518176	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000522476	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000522476	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000522476	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000522476	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000522476	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518066	ENST00000513761		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518066	ENST00000347613		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518066	ENST00000360642		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518066	ENST00000504131		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000518066	ENST00000506924		TCGA	RV	PRAD	TCGA-HC-7736-01A	NDRG1	chr8	134249419	-	CLCN3	chr4	170623929	+
Frame-shit	ENST00000356175	ENST00000357654		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000356175	ENST00000351666		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000356175	ENST00000309486		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000356175	ENST00000346315		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000354071		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000352993		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000468300		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000591534		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000591849		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000586385		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000493795		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000471181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000356175	ENST00000491747		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000358273	ENST00000357654		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000358273	ENST00000351666		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000358273	ENST00000309486		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
Frame-shit	ENST00000358273	ENST00000346315		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000354071		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000352993		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000468300		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000591534		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000591849		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000586385		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000493795		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000471181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
5CDS-intron	ENST00000358273	ENST00000491747		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000431387	ENST00000357654		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000431387	ENST00000351666		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000431387	ENST00000309486		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000431387	ENST00000346315		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000354071		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000352993		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000468300		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000591534		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000591849		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000586385		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000493795		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000471181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000431387	ENST00000491747		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-3CDS	ENST00000581113	ENST00000357654		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-3CDS	ENST00000581113	ENST00000351666		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-3CDS	ENST00000581113	ENST00000309486		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-3CDS	ENST00000581113	ENST00000346315		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000354071		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000352993		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000468300		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000591534		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000591849		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000586385		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000493795		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000471181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
3UTR-intron	ENST00000581113	ENST00000491747		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000417592	ENST00000357654		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000417592	ENST00000351666		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000417592	ENST00000309486		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000417592	ENST00000346315		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000354071		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000352993		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000468300		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000591534		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000591849		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000586385		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000493795		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000471181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000417592	ENST00000491747		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000444181	ENST00000357654		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000444181	ENST00000351666		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000444181	ENST00000309486		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-3CDS	ENST00000444181	ENST00000346315		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000354071		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000352993		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000468300		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000591534		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000591849		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000586385		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000493795		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000471181		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
intron-intron	ENST00000444181	ENST00000491747		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29653270	+	BRCA1	chr17	41215968	-
In-frame	ENST00000226574	ENST00000424859		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
Frame-shit	ENST00000226574	ENST00000535008		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
5CDS-3UTR	ENST00000226574	ENST00000401970		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
5CDS-3UTR	ENST00000226574	ENST00000543266		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
In-frame	ENST00000394820	ENST00000424859		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
Frame-shit	ENST00000394820	ENST00000535008		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
5CDS-3UTR	ENST00000394820	ENST00000401970		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
5CDS-3UTR	ENST00000394820	ENST00000543266		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
In-frame	ENST00000505458	ENST00000424859		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
Frame-shit	ENST00000505458	ENST00000535008		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
5CDS-3UTR	ENST00000505458	ENST00000401970		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
5CDS-3UTR	ENST00000505458	ENST00000543266		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3CDS	ENST00000510638	ENST00000424859		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3CDS	ENST00000510638	ENST00000535008		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3UTR	ENST00000510638	ENST00000401970		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3UTR	ENST00000510638	ENST00000543266		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3CDS	ENST00000600343	ENST00000424859		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3CDS	ENST00000600343	ENST00000535008		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3UTR	ENST00000600343	ENST00000401970		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
intron-3UTR	ENST00000600343	ENST00000543266		TCGA	RV	PRAD	TCGA-G9-6377-01A	NFKB1	chr4	103446714	+	LHFPL3	chr7	104546634	+
Frame-shit	ENST00000393232	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000393232	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000393232	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000353868	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000353868	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000353868	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000539636	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000539636	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000539636	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000311967	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000311967	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000311967	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000223190	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000223190	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000223190	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000393230	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000393230	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000393230	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000393231	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
Frame-shit	ENST00000393231	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
5CDS-3UTR	ENST00000393231	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
intron-3CDS	ENST00000477428	ENST00000261461		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
intron-3CDS	ENST00000477428	ENST00000537030		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
intron-3UTR	ENST00000477428	ENST00000498129		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	NRF1	chr7	129357216	+	PPP2R5A	chr1	212502477	+
In-frame	ENST00000373719	ENST00000379068		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
In-frame	ENST00000373719	ENST00000379059		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
5CDS-intron	ENST00000373719	ENST00000493342		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
In-frame	ENST00000373701	ENST00000379068		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
In-frame	ENST00000373701	ENST00000379059		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
5CDS-intron	ENST00000373701	ENST00000493342		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
3UTR-3CDS	ENST00000498566	ENST00000379068		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
3UTR-3CDS	ENST00000498566	ENST00000379059		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
3UTR-intron	ENST00000498566	ENST00000493342		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	OGT	chrX	70757922	+	POLA1	chrX	24828015	+
In-frame	ENST00000366554	ENST00000255559		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
In-frame	ENST00000366554	ENST00000542342		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000366554	ENST00000579988		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000366554	ENST00000579732		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
In-frame	ENST00000331838	ENST00000255559		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
In-frame	ENST00000331838	ENST00000542342		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000331838	ENST00000579988		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000331838	ENST00000579732		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5UTR-3CDS	ENST00000469376	ENST00000255559		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5UTR-3CDS	ENST00000469376	ENST00000542342		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5UTR-intron	ENST00000469376	ENST00000579988		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
5UTR-intron	ENST00000469376	ENST00000579732		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	OPN3	chr1	241803184	-	SLC39A11	chr17	70944014	-
Frame-shit	ENST00000307116	ENST00000433211		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000307116	ENST00000373744		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000307116	ENST00000545309		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
5CDS-intron	ENST00000307116	ENST00000373735		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000373008	ENST00000433211		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000373008	ENST00000373744		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000373008	ENST00000545309		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
5CDS-intron	ENST00000373008	ENST00000373735		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000263556	ENST00000433211		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000263556	ENST00000373744		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000263556	ENST00000545309		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
5CDS-intron	ENST00000263556	ENST00000373735		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000412021	ENST00000433211		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000412021	ENST00000373744		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000412021	ENST00000545309		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
5CDS-intron	ENST00000412021	ENST00000373735		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000440381	ENST00000433211		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000440381	ENST00000373744		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000440381	ENST00000545309		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
5CDS-intron	ENST00000440381	ENST00000373735		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000394890	ENST00000433211		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000394890	ENST00000373744		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000394890	ENST00000545309		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
5CDS-intron	ENST00000394890	ENST00000373735		TCGA	RV	PRAD	TCGA-CH-5771-01A	P4HA1	chr10	74831787	-	CTNNA3	chr10	69299427	-
Frame-shit	ENST00000331483	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331483	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331483	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331483	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331483	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000576390	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000576390	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000576390	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000576390	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000576390	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000439918	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000439918	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000439918	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000439918	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000439918	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000472244	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000472244	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000472244	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000472244	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
intron-intron	ENST00000472244	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6366-01A	P4HB	chr17	79801037	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000514342	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5UTR-3CDS	ENST00000514342	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5UTR-5UTR	ENST00000514342	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000505697	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000505697	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000505697	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
3UTR-3CDS	ENST00000511363	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
3UTR-3CDS	ENST00000511363	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
3UTR-5UTR	ENST00000511363	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000503750	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000503750	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000503750	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000281631	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000281631	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000281631	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000514067	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000514067	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000514067	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000505554	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000505554	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000505554	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000513738	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000513738	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000513738	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000503665	ENST00000237853		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
Frame-shit	ENST00000503665	ENST00000431061		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000503665	ENST00000506628		TCGA	RV	PRAD	TCGA-VN-A943-01A	PARP8	chr5	49963959	+	ELL2	chr5	95278753	-
5CDS-5UTR	ENST00000404141	ENST00000223293		TCGA	RV	PRAD	TCGA-G9-6343-01A	PAXIP1	chr7	154774929	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000404141	ENST00000474605		TCGA	RV	PRAD	TCGA-G9-6343-01A	PAXIP1	chr7	154774929	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000397192	ENST00000223293		TCGA	RV	PRAD	TCGA-G9-6343-01A	PAXIP1	chr7	154774929	-	GIMAP2	chr7	150384140	+
5CDS-5UTR	ENST00000397192	ENST00000474605		TCGA	RV	PRAD	TCGA-G9-6343-01A	PAXIP1	chr7	154774929	-	GIMAP2	chr7	150384140	+
5UTR-5UTR	ENST00000473219	ENST00000223293		TCGA	RV	PRAD	TCGA-G9-6343-01A	PAXIP1	chr7	154774929	-	GIMAP2	chr7	150384140	+
5UTR-5UTR	ENST00000473219	ENST00000474605		TCGA	RV	PRAD	TCGA-G9-6343-01A	PAXIP1	chr7	154774929	-	GIMAP2	chr7	150384140	+
intron-5UTR	ENST00000340635	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000340635	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000340635	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000340635	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000360047	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000360047	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000360047	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000360047	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000507116	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000507116	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000507116	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000507116	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
5UTR-5UTR	ENST00000502484	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
5UTR-intron	ENST00000502484	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
5UTR-intron	ENST00000502484	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
5UTR-5UTR	ENST00000502484	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000546160	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000546160	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000546160	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000546160	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000502575	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000502575	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000502575	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000502575	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000358923	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000358923	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000358923	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000358923	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503258	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503258	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503258	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503258	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000405755	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000405755	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000405755	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000405755	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000317118	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000317118	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000317118	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000317118	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503947	ENST00000508821		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503947	ENST00000425382		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-intron	ENST00000503947	ENST00000438340		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
intron-5UTR	ENST00000503947	ENST00000505959		TCGA	RV	PRAD	TCGA-V1-A9Z9-01A	PDE4D	chr5	59783769	-	ELOVL7	chr5	60095057	-
5CDS-intron	ENST00000335512	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000335512	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000335512	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000539837	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000539837	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000539837	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
3UTR-intron	ENST00000470987	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
3UTR-5UTR	ENST00000470987	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
3UTR-intron	ENST00000470987	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000291539	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000291539	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000291539	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398236	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398236	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398236	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398229	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398229	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398229	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398234	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398234	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398234	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398232	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398232	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398232	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398227	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398227	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398227	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398225	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398225	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398225	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000380328	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000380328	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000380328	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000328862	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000328862	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000328862	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000335440	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000335440	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000335440	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398224	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000398224	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000398224	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000349112	ENST00000454800		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-5UTR	ENST00000349112	ENST00000398341		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
5CDS-intron	ENST00000349112	ENST00000352133		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PDE9A	chr21	44174174	+	SLC37A1	chr21	43922406	+
Frame-shit	ENST00000317276	ENST00000273920		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
5CDS-5UTR	ENST00000317276	ENST00000509635		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
Frame-shit	ENST00000581082	ENST00000273920		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
5CDS-5UTR	ENST00000581082	ENST00000509635		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
intron-3CDS	ENST00000578089	ENST00000273920		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
intron-5UTR	ENST00000578089	ENST00000509635		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
intron-3CDS	ENST00000354903	ENST00000273920		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
intron-5UTR	ENST00000354903	ENST00000509635		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	PER1	chr17	8045967	-	ENOPH1	chr4	83369073	+
5CDS-5UTR	ENST00000371084	ENST00000341233		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
5CDS-5UTR	ENST00000371084	ENST00000371790		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
intron-5UTR	ENST00000540265	ENST00000341233		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
intron-5UTR	ENST00000540265	ENST00000371790		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
intron-5UTR	ENST00000371083	ENST00000341233		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
intron-5UTR	ENST00000371083	ENST00000371790		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
intron-5UTR	ENST00000483707	ENST00000341233		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
intron-5UTR	ENST00000483707	ENST00000371790		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	PGM1	chr1	64059405	+	SLC16A12	chr10	91222381	-
5CDS-5UTR	ENST00000521381	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521381	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521381	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521381	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521381	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000521381	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000521381	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521657	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521657	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521657	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521657	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000521657	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000521657	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000521657	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000517643	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000517643	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000517643	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000517643	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000517643	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000517643	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000517643	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000274335	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000274335	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000274335	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000274335	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000274335	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000274335	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000274335	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000396611	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000396611	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000396611	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000396611	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-5UTR	ENST00000396611	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000396611	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
5CDS-intron	ENST00000396611	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000320694	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000320694	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000320694	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000320694	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000320694	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000320694	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000320694	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000336483	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000336483	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000336483	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000336483	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000336483	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000336483	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000336483	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000523872	ENST00000549982		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000523872	ENST00000361630		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000523872	ENST00000552217		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000523872	ENST00000393128		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-5UTR	ENST00000523872	ENST00000547098		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000523872	ENST00000548545		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-intron	ENST00000523872	ENST00000552938		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PIK3R1	chr5	67522837	+	MRPL42	chr12	93862965	+
intron-3CDS	ENST00000400520	ENST00000588240		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
intron-5UTR	ENST00000400520	ENST00000592237		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
intron-5UTR	ENST00000400520	ENST00000311979		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
Frame-shit	ENST00000496748	ENST00000588240		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
5CDS-5UTR	ENST00000496748	ENST00000592237		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
5CDS-5UTR	ENST00000496748	ENST00000311979		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
Frame-shit	ENST00000375111	ENST00000588240		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
5CDS-5UTR	ENST00000375111	ENST00000592237		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
5CDS-5UTR	ENST00000375111	ENST00000311979		TCGA	RV	PRAD	TCGA-CH-5766-01A	PLA2G2A	chr1	20301931	-	TAF15	chr17	34147336	+
In-frame	ENST00000393409	ENST00000290913		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
In-frame	ENST00000393409	ENST00000508789		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
5CDS-intron	ENST00000393409	ENST00000515867		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
In-frame	ENST00000251772	ENST00000290913		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
In-frame	ENST00000251772	ENST00000508789		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
5CDS-intron	ENST00000251772	ENST00000515867		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
intron-3CDS	ENST00000505278	ENST00000290913		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
intron-3CDS	ENST00000505278	ENST00000508789		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
intron-intron	ENST00000505278	ENST00000515867		TCGA	RV	PRAD	TCGA-HC-8265-01A	PLXNA1	chr3	126710409	+	CHCHD6	chr3	126445921	+
In-frame	ENST00000341695	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-3UTR	ENST00000341695	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-5UTR	ENST00000341695	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
In-frame	ENST00000348706	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-3UTR	ENST00000348706	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-5UTR	ENST00000348706	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
In-frame	ENST00000432483	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-3UTR	ENST00000432483	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-5UTR	ENST00000432483	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
intron-3CDS	ENST00000354147	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
intron-3UTR	ENST00000354147	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
intron-5UTR	ENST00000354147	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
In-frame	ENST00000380004	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-3UTR	ENST00000380004	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-5UTR	ENST00000380004	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
In-frame	ENST00000357415	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-3UTR	ENST00000357415	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5CDS-5UTR	ENST00000357415	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5UTR-3CDS	ENST00000509426	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5UTR-3UTR	ENST00000509426	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5UTR-5UTR	ENST00000509426	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
intron-3CDS	ENST00000310267	ENST00000507866		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
intron-3UTR	ENST00000310267	ENST00000511199		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
intron-5UTR	ENST00000310267	ENST00000329016		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PPA2	chr4	106377838	-	SORCS2	chr4	7398015	+
5UTR-3CDS	ENST00000444397	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000444397	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000444397	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-5UTR	ENST00000444397	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-intron	ENST00000444397	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000360694	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000360694	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000360694	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-5UTR	ENST00000360694	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-intron	ENST00000360694	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000418635	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000418635	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000418635	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-5UTR	ENST00000418635	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-intron	ENST00000418635	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
Frame-shit	ENST00000448077	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
Frame-shit	ENST00000448077	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
Frame-shit	ENST00000448077	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5CDS-5UTR	ENST00000448077	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5CDS-intron	ENST00000448077	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000337400	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000337400	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000337400	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-5UTR	ENST00000337400	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-intron	ENST00000337400	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000311565	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000311565	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-3CDS	ENST00000311565	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-5UTR	ENST00000311565	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
5UTR-intron	ENST00000311565	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
intron-3CDS	ENST00000540939	ENST00000448612		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
intron-3CDS	ENST00000540939	ENST00000423258		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
intron-3CDS	ENST00000540939	ENST00000333572		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
intron-5UTR	ENST00000540939	ENST00000546525		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
intron-intron	ENST00000540939	ENST00000420344		TCGA	RV	PRAD	TCGA-EJ-5498-01A	PPARD	chr6	35314927	+	WDR27	chr6	170002417	-
In-frame	ENST00000512215	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000512215	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000512215	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000394854	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000394854	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000394854	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000323055	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000323055	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000323055	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000394853	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
In-frame	ENST00000394853	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000394853	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000507176	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000507176	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000507176	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000523694	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000523694	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000523694	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000510292	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000510292	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000510292	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000321030	ENST00000338146		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	PRPF31	chr19	54629992	+	SPRYD4	chr12	56862823	+
Frame-shit	ENST00000419967	ENST00000338146		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	PRPF31	chr19	54629992	+	SPRYD4	chr12	56862823	+
Frame-shit	ENST00000391755	ENST00000338146		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	PRPF31	chr19	54629992	+	SPRYD4	chr12	56862823	+
3UTR-3CDS	ENST00000498612	ENST00000338146		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	PRPF31	chr19	54629992	+	SPRYD4	chr12	56862823	+
5CDS-intron	ENST00000371953	ENST00000374875		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000265371		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000374867		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000395995		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000374821		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000374822		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000374823		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000374816		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-intron	ENST00000371953	ENST00000432372		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000374875		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000265371		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000374867		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000395995		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000374821		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000374822		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000374823		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000374816		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
intron-intron	ENST00000472832	ENST00000432372		TCGA	RV	PRAD	TCGA-HC-A48F-01A	PTEN	chr10	89693008	+	NRP1	chr10	33559784	-
5CDS-5UTR	ENST00000275262	ENST00000343245		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000275262	ENST00000369070		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000275262	ENST00000369076		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000275262	ENST00000360666		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-intron	ENST00000275262	ENST00000475645		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000392127	ENST00000343245		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000392127	ENST00000369070		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000392127	ENST00000369076		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000392127	ENST00000360666		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-intron	ENST00000392127	ENST00000475645		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000453779	ENST00000343245		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000453779	ENST00000369070		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000453779	ENST00000369076		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000453779	ENST00000360666		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-intron	ENST00000453779	ENST00000475645		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361752	ENST00000343245		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361752	ENST00000369070		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361752	ENST00000369076		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361752	ENST00000360666		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-intron	ENST00000361752	ENST00000475645		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361195	ENST00000343245		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361195	ENST00000369070		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361195	ENST00000369076		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000361195	ENST00000360666		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-intron	ENST00000361195	ENST00000475645		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000424802	ENST00000343245		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000424802	ENST00000369070		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000424802	ENST00000369076		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-5UTR	ENST00000424802	ENST00000360666		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
5CDS-intron	ENST00000424802	ENST00000475645		TCGA	RV	PRAD	TCGA-HC-A631-01A	QKI	chr6	163836367	+	ATG5	chr6	106764141	-
Frame-shit	ENST00000367635	ENST00000448150		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000367635	ENST00000367649		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000367635	ENST00000465723		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000367635	ENST00000462775		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000367634	ENST00000448150		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000367634	ENST00000367649		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000367634	ENST00000465723		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000367634	ENST00000462775		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
intron-3CDS	ENST00000477383	ENST00000448150		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
intron-3CDS	ENST00000477383	ENST00000367649		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
intron-intron	ENST00000477383	ENST00000465723		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
intron-intron	ENST00000477383	ENST00000462775		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	RALGPS2	chr1	178790839	+	RASAL2	chr1	178359235	+
In-frame	ENST00000439268	ENST00000252674		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000439268	ENST00000585588		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
In-frame	ENST00000340578	ENST00000252674		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000340578	ENST00000585588		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
In-frame	ENST00000541471	ENST00000252674		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000541471	ENST00000585588		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
In-frame	ENST00000591092	ENST00000252674		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000591092	ENST00000585588		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
In-frame	ENST00000034275	ENST00000252674		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
5CDS-intron	ENST00000034275	ENST00000585588		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
intron-3CDS	ENST00000591124	ENST00000252674		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
intron-intron	ENST00000591124	ENST00000585588		TCGA	RV	PRAD	TCGA-HC-8265-01A	RANBP3	chr19	5924838	-	MLLT1	chr19	6270770	-
intron-3CDS	ENST00000259605	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-intron	ENST00000259605	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-3CDS	ENST00000353739	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-intron	ENST00000353739	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
5UTR-3CDS	ENST00000357058	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
5UTR-intron	ENST00000357058	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
5UTR-3CDS	ENST00000350199	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
5UTR-intron	ENST00000350199	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-3CDS	ENST00000377885	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-intron	ENST00000377885	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
5UTR-3CDS	ENST00000377877	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
5UTR-intron	ENST00000377877	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-3CDS	ENST00000491349	ENST00000458573		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-intron	ENST00000491349	ENST00000456238		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	RNF38	chr9	36400551	-	LMOD2	chr7	123301914	+
intron-3CDS	ENST00000493952	ENST00000273183		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
intron-3CDS	ENST00000493952	ENST00000457375		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
intron-3UTR	ENST00000493952	ENST00000476388		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000338745	ENST00000273183		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000338745	ENST00000457375		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
5CDS-3UTR	ENST00000338745	ENST00000476388		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000417717	ENST00000273183		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000417717	ENST00000457375		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
5CDS-3UTR	ENST00000417717	ENST00000476388		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000454909	ENST00000273183		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000454909	ENST00000457375		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
5CDS-3UTR	ENST00000454909	ENST00000476388		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
intron-3CDS	ENST00000475083	ENST00000273183		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
intron-3CDS	ENST00000475083	ENST00000457375		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
intron-3UTR	ENST00000475083	ENST00000476388		TCGA	RV	PRAD	TCGA-EJ-7785-01A	SATB1	chr3	18419662	-	STAC	chr3	36484856	+
Frame-shit	ENST00000367771	ENST00000402685		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000367771	ENST00000539469		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000367771	ENST00000298919		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000367772	ENST00000402685		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000367772	ENST00000539469		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
Frame-shit	ENST00000367772	ENST00000298919		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
In-frame	ENST00000367770	ENST00000402685		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
In-frame	ENST00000367770	ENST00000539469		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
In-frame	ENST00000367770	ENST00000298919		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000470238	ENST00000402685		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000470238	ENST00000539469		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000470238	ENST00000298919		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SCYL3	chr1	169831754	-	PDZRN4	chr12	41900258	+
intron-3CDS	ENST00000474290	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000474290	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000474290	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000381359	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000381359	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000381359	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000249786	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000249786	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000249786	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000409960	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000409960	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000409960	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
3UTR-3CDS	ENST00000409646	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
3UTR-3CDS	ENST00000409646	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
3UTR-intron	ENST00000409646	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000594896	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000594896	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000594896	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000339624	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000339624	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000339624	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000409291	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000409291	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000409291	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000402131	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000402131	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000402131	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000403425	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000403425	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000403425	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000409614	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000409614	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000409614	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000600633	ENST00000374135		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000600633	ENST00000374133		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-intron	ENST00000600633	ENST00000461282		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	SERF2	chr15	44091305	+	GPN2	chr1	27210781	-
intron-3CDS	ENST00000432059	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-intron	ENST00000432059	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
In-frame	ENST00000335472	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
5CDS-intron	ENST00000335472	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
3UTR-3CDS	ENST00000264986	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
3UTR-intron	ENST00000264986	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
In-frame	ENST00000507030	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
5CDS-intron	ENST00000507030	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
In-frame	ENST00000394062	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
5CDS-intron	ENST00000394062	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-3CDS	ENST00000394059	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-intron	ENST00000394059	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-3CDS	ENST00000511315	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-intron	ENST00000511315	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-3CDS	ENST00000511374	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-intron	ENST00000511374	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-3CDS	ENST00000502607	ENST00000238256		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
intron-intron	ENST00000502607	ENST00000493847		TCGA	RV	PRAD	TCGA-G9-6361-01A	SLC10A7	chr4	147363935	-	FKBP15	chr9	115932909	-
5CDS-5UTR	ENST00000436008	ENST00000378478		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000436008	ENST00000378491		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000436008	ENST00000475830		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000436008	ENST00000378475		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000406686	ENST00000378478		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000406686	ENST00000378491		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000406686	ENST00000475830		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000406686	ENST00000378475		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000380302	ENST00000378478		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000380302	ENST00000378491		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000380302	ENST00000475830		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000380302	ENST00000378475		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000490273	ENST00000378478		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000490273	ENST00000378491		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000490273	ENST00000475830		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000490273	ENST00000378475		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000380298	ENST00000378478		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-5UTR	ENST00000380298	ENST00000378491		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000380298	ENST00000475830		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
5CDS-intron	ENST00000380298	ENST00000378475		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
intron-5UTR	ENST00000433689	ENST00000378478		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
intron-5UTR	ENST00000433689	ENST00000378491		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
intron-intron	ENST00000433689	ENST00000475830		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
intron-intron	ENST00000433689	ENST00000378475		TCGA	RV	PRAD	TCGA-VP-A87K-01A	SLC22A23	chr6	3410422	-	NRSN1	chr6	24134547	+
Frame-shit	ENST00000341119	ENST00000398204		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000341119	ENST00000439864		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000341119	ENST00000398201		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000341119	ENST00000265727		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000341119	ENST00000315984		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000341119	ENST00000398209		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000341119	ENST00000476330		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	SLC25A40	chr7	87476264	-	ADAM22	chr7	87822431	+
5CDS-intron	ENST00000261867	ENST00000334456		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000261867	ENST00000376450		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000261867	ENST00000444035		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000261867	ENST00000544570		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000261867	ENST00000418754		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000261867	ENST00000540345		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5CDS-intron	ENST00000261867	ENST00000540380		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000334456		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000376450		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000444035		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000544570		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000418754		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000540345		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000559667	ENST00000540380		TCGA	RV	PRAD	TCGA-CH-5765-01A	SLC30A4	chr15	45803336	-	PDE2A	chr11	72342183	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
In-frame	ENST00000460934	ENST00000421182		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000357867		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000323926		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000336916		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000354785		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000357009		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000346544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000345488		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000359671		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000446046		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000443816		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000432072		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000460934	ENST00000356005		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
5CDS-intron	ENST00000460934	ENST00000490833		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
5CDS-intron	ENST00000460934	ENST00000426059		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000421182		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000357867		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000323926		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000336916		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000354785		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000357009		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000346544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000345488		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000359671		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000446046		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000443816		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000432072		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
In-frame	ENST00000367145	ENST00000356005		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
5CDS-intron	ENST00000367145	ENST00000490833		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
5CDS-intron	ENST00000367145	ENST00000426059		TCGA	RV	PRAD	TCGA-J4-A83I-01A	SLC45A3	chr1	205626979	-	FN1	chr2	216274837	-
5CDS-3UTR	ENST00000460934	ENST00000318789		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000460934	ENST00000475937		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000493089		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000484350		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000318779		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000491238		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000498215		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000468577		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000460934	ENST00000472382		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000367145	ENST00000318789		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000367145	ENST00000475937		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000493089		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000484350		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000318779		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000491238		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000498215		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000468577		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000367145	ENST00000472382		TCGA	RV	PRAD	TCGA-HC-7212-01A	SLC45A3	chr1	205626979	-	FOXP1	chr3	71007472	-
In-frame	ENST00000369755	ENST00000369849		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SLK	chr10	105727653	+	INA	chr10	105046792	+
In-frame	ENST00000335753	ENST00000369849		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SLK	chr10	105727653	+	INA	chr10	105046792	+
intron-3CDS	ENST00000474260	ENST00000369849		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SLK	chr10	105727653	+	INA	chr10	105046792	+
In-frame	ENST00000371121	ENST00000371979		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-5UTR	ENST00000371121	ENST00000251943		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-5UTR	ENST00000371121	ENST00000394780		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-intron	ENST00000371121	ENST00000470971		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
In-frame	ENST00000371122	ENST00000371979		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-5UTR	ENST00000371122	ENST00000251943		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-5UTR	ENST00000371122	ENST00000394780		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-intron	ENST00000371122	ENST00000470971		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
In-frame	ENST00000371123	ENST00000371979		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-5UTR	ENST00000371123	ENST00000251943		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-5UTR	ENST00000371123	ENST00000394780		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
5CDS-intron	ENST00000371123	ENST00000470971		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
intron-3CDS	ENST00000478420	ENST00000371979		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
intron-5UTR	ENST00000478420	ENST00000251943		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
intron-5UTR	ENST00000478420	ENST00000394780		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
intron-intron	ENST00000478420	ENST00000470971		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	SMARCA1	chrX	128633709	-	ALG13	chrX	110925464	+
Frame-shit	ENST00000544865	ENST00000341657		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000544865	ENST00000570535		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000544865	ENST00000574367		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000544865	ENST00000573722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000544865	ENST00000433651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000263073	ENST00000341657		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000263073	ENST00000570535		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000263073	ENST00000574367		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000263073	ENST00000573722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000263073	ENST00000433651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000354901	ENST00000341657		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000354901	ENST00000570535		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000354901	ENST00000574367		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000354901	ENST00000573722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000354901	ENST00000433651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000536871	ENST00000341657		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000536871	ENST00000570535		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
Frame-shit	ENST00000536871	ENST00000574367		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000536871	ENST00000573722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5CDS-intron	ENST00000536871	ENST00000433651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5UTR-3CDS	ENST00000573166	ENST00000341657		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5UTR-3CDS	ENST00000573166	ENST00000570535		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5UTR-3CDS	ENST00000573166	ENST00000574367		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5UTR-intron	ENST00000573166	ENST00000573722		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
5UTR-intron	ENST00000573166	ENST00000433651		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMG6	chr17	1985104	-	ANKFY1	chr17	4145743	-
In-frame	ENST00000544865	ENST00000225519		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
5CDS-intron	ENST00000544865	ENST00000572705		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
In-frame	ENST00000263073	ENST00000225519		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
5CDS-intron	ENST00000263073	ENST00000572705		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
In-frame	ENST00000354901	ENST00000225519		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
5CDS-intron	ENST00000354901	ENST00000572705		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
In-frame	ENST00000536871	ENST00000225519		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
5CDS-intron	ENST00000536871	ENST00000572705		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
intron-3CDS	ENST00000573166	ENST00000225519		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
intron-intron	ENST00000573166	ENST00000572705		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMG6	chr17	2139786	-	SHPK	chr17	3518831	-
intron-3CDS	ENST00000448662	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000448662	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000448662	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000448662	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000448662	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000448662	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000448662	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000448662	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000448662	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000448662	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000431808	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000431808	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000431808	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000431808	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000284776	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-5UTR	ENST00000284776	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-intron	ENST00000284776	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-intron	ENST00000284776	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000437304	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000437304	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000437304	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000437304	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000319471	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000319471	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000319471	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000319471	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000449407	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000449407	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000449407	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000449407	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-3CDS	ENST00000355634	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-5UTR	ENST00000355634	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-intron	ENST00000355634	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
5UTR-intron	ENST00000355634	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000393528	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000393528	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000393528	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000393528	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000418609	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000418609	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000418609	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000418609	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000532038		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000376922		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000528384		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000455881		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000532891		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000428638		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-3CDS	ENST00000498125	ENST00000442348		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-5UTR	ENST00000498125	ENST00000582826		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000498125	ENST00000528273		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
intron-intron	ENST00000498125	ENST00000290470		TCGA	RV	PRAD	TCGA-HC-7748-01A	SORBS2	chr4	186877350	-	ARHGAP27	chr17	43475413	-
Frame-shit	ENST00000394945	ENST00000394886		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
Frame-shit	ENST00000394945	ENST00000394884		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
Frame-shit	ENST00000394945	ENST00000505120		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
Frame-shit	ENST00000282223	ENST00000394886		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
Frame-shit	ENST00000282223	ENST00000394884		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
Frame-shit	ENST00000282223	ENST00000505120		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
intron-3CDS	ENST00000509978	ENST00000394886		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
intron-3CDS	ENST00000509978	ENST00000394884		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
intron-3CDS	ENST00000509978	ENST00000505120		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	SPOCK1	chr5	136834062	-	CDC23	chr5	137548752	-
intron-5UTR	ENST00000290902	ENST00000382952		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000290902	ENST00000290921		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000290902	ENST00000510568		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000290902	ENST00000515690		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000431380	ENST00000382952		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000431380	ENST00000290921		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000431380	ENST00000510568		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000431380	ENST00000515690		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000400762	ENST00000382952		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000400762	ENST00000290921		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000400762	ENST00000510568		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000400762	ENST00000515690		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	SPON2	chr4	1202364	-	CTBP1	chr4	1235307	-
In-frame	ENST00000534894	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000534894	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000534894	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000536810	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000536810	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000536810	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000545257	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000545257	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000545257	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355995	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355995	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000355995	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000543371	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000543371	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000543371	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355717	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355717	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000355717	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000538897	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000538897	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000538897	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000349937	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000349937	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000349937	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369397	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369397	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369397	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000352065	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000352065	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000352065	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369395	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369395	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369395	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000542695	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000542695	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5UTR-intron	ENST00000542695	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369389	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369389	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000369389	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369386	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369386	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000369386	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000466338	ENST00000432306		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000466338	ENST00000393077		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000466338	ENST00000483122		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000379613	ENST00000473997		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379613	ENST00000346416		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379613	ENST00000339269		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379613	ENST00000357886		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000379613	ENST00000544843		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000379613	ENST00000477105		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379604	ENST00000473997		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379604	ENST00000346416		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379604	ENST00000339269		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379604	ENST00000357886		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000379604	ENST00000544843		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000379604	ENST00000477105		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000319516	ENST00000473997		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000319516	ENST00000346416		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000319516	ENST00000339269		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000319516	ENST00000357886		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000319516	ENST00000544843		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000319516	ENST00000477105		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379608	ENST00000473997		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379608	ENST00000346416		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379608	ENST00000339269		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000379608	ENST00000357886		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000379608	ENST00000544843		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000379608	ENST00000477105		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000482890	ENST00000473997		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000482890	ENST00000346416		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000482890	ENST00000339269		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
In-frame	ENST00000482890	ENST00000357886		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000482890	ENST00000544843		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-intron	ENST00000482890	ENST00000477105		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5UTR-3CDS	ENST00000497266	ENST00000473997		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5UTR-3CDS	ENST00000497266	ENST00000346416		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5UTR-3CDS	ENST00000497266	ENST00000339269		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5UTR-3CDS	ENST00000497266	ENST00000357886		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5UTR-intron	ENST00000497266	ENST00000544843		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5UTR-intron	ENST00000497266	ENST00000477105		TCGA	RV	PRAD	TCGA-ZG-A9L9-01A	TFAP2A	chr6	10402725	-	CDK5RAP1	chr20	31958435	-
5CDS-5UTR	ENST00000392314	ENST00000332687		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
5CDS-5UTR	ENST00000392314	ENST00000349225		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
5CDS-5UTR	ENST00000272771	ENST00000332687		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
5CDS-5UTR	ENST00000272771	ENST00000349225		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
intron-5UTR	ENST00000487771	ENST00000332687		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
intron-5UTR	ENST00000487771	ENST00000349225		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
intron-5UTR	ENST00000409056	ENST00000332687		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
intron-5UTR	ENST00000409056	ENST00000349225		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	TMEFF2	chr2	193044394	-	RLIM	chrX	73815835	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5498-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5508-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BN-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000372390	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372390	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372390	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372397	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372397	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372397	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000315660	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000315660	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000315660	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372383	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372383	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372383	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372384	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372384	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000372384	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000372382	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000372382	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000372382	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000506081	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000506081	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000506081	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000514426	ENST00000355264		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000514426	ENST00000372745		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000514426	ENST00000487653		TCGA	RV	PRAD	TCGA-HC-7748-01A	TSC22D3	chrX	106956451	-	AP3M1	chr10	75898140	-
5CDS-3UTR	ENST00000376747	ENST00000380094		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000376747	ENST00000380092		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000376747	ENST00000191063		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-3UTR	ENST00000376714	ENST00000380094		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000376714	ENST00000380092		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000376714	ENST00000191063		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-3UTR	ENST00000397618	ENST00000380094		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000397618	ENST00000380092		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000397618	ENST00000191063		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
intron-3UTR	ENST00000467305	ENST00000380094		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000467305	ENST00000380092		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000467305	ENST00000191063		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-3UTR	ENST00000376712	ENST00000380094		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000376712	ENST00000380092		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000376712	ENST00000191063		TCGA	RV	PRAD	TCGA-EJ-5521-01A	UGGT2	chr13	96705409	-	ANKRD16	chr10	5904654	-
Frame-shit	ENST00000261497	ENST00000571816		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
Frame-shit	ENST00000261497	ENST00000572430		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
Frame-shit	ENST00000261497	ENST00000262482		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
Frame-shit	ENST00000261497	ENST00000575111		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
Frame-shit	ENST00000261497	ENST00000576229		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
5CDS-3UTR	ENST00000261497	ENST00000570492		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000537526	ENST00000571816		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000537526	ENST00000572430		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000537526	ENST00000262482		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000537526	ENST00000575111		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000537526	ENST00000576229		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3UTR	ENST00000537526	ENST00000570492		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000455117	ENST00000571816		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000455117	ENST00000572430		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000455117	ENST00000262482		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000455117	ENST00000575111		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3CDS	ENST00000455117	ENST00000576229		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
intron-3UTR	ENST00000455117	ENST00000570492		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	USP22	chr17	20945978	-	RNF167	chr17	4847853	+
Frame-shit	ENST00000367545	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367545	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367545	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367545	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367545	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367545	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367545	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367545	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367545	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367545	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367545	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367526	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367526	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367526	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367526	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367526	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
Frame-shit	ENST00000367526	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367526	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367526	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367526	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367526	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-intron	ENST00000367526	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-3CDS	ENST00000480333	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-3CDS	ENST00000480333	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-3CDS	ENST00000480333	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-3CDS	ENST00000480333	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-3CDS	ENST00000480333	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-3CDS	ENST00000480333	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-intron	ENST00000480333	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-intron	ENST00000480333	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-intron	ENST00000480333	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-intron	ENST00000480333	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
intron-intron	ENST00000480333	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5763-01A	UTRN	chr6	145110415	+	EIF4G3	chr1	21139732	-
5CDS-3UTR	ENST00000273038	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000273038	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000273038	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000430365	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000430365	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000430365	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000404339	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000404339	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000404339	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000480288	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000480288	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000480288	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000413604	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000413604	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000413604	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000451674	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000451674	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000451674	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000424529	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000424529	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000424529	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5740-01A	VGLL4	chr3	11597544	-	FOXP1	chr3	71007472	-
Frame-shit	ENST00000395996	ENST00000318528		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000395996	ENST00000545282		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000358544	ENST00000318528		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000358544	ENST00000545282		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000357162	ENST00000318528		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000357162	ENST00000545282		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000355155	ENST00000318528		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000355155	ENST00000545282		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
intron-3CDS	ENST00000441350	ENST00000318528		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
intron-3CDS	ENST00000441350	ENST00000545282		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
3UTR-3CDS	ENST00000521932	ENST00000318528		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
3UTR-3CDS	ENST00000521932	ENST00000545282		TCGA	RV	PRAD	TCGA-J4-A67T-01A	VPS13B	chr8	100168971	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000249837	ENST00000305850		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000249837	ENST00000299572		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000249837	ENST00000439957		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000249837	ENST00000393335		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000249837	ENST00000569461		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000249837	ENST00000428963		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000261517	ENST00000305850		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000261517	ENST00000299572		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000261517	ENST00000439957		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000261517	ENST00000393335		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000261517	ENST00000569461		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000261517	ENST00000428963		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395896	ENST00000305850		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395896	ENST00000299572		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395896	ENST00000439957		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395896	ENST00000393335		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000395896	ENST00000569461		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000395896	ENST00000428963		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395898	ENST00000305850		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395898	ENST00000299572		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395898	ENST00000439957		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
Frame-shit	ENST00000395898	ENST00000393335		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000395898	ENST00000569461		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000395898	ENST00000428963		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
intron-3CDS	ENST00000558919	ENST00000305850		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
intron-3CDS	ENST00000558919	ENST00000299572		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
intron-3CDS	ENST00000558919	ENST00000439957		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
intron-3CDS	ENST00000558919	ENST00000393335		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
intron-3UTR	ENST00000558919	ENST00000569461		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
intron-3UTR	ENST00000558919	ENST00000428963		TCGA	RV	PRAD	TCGA-EJ-5530-01A	VPS13C	chr15	62333523	-	CENPN	chr16	81053705	+
5CDS-3UTR	ENST00000268616	ENST00000588752		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	ZCCHC14	chr16	87493614	-	IMPA2	chr18	11999053	+
5CDS-5UTR	ENST00000268616	ENST00000589238		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	ZCCHC14	chr16	87493614	-	IMPA2	chr18	11999053	+
5CDS-5UTR	ENST00000268616	ENST00000269159		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	ZCCHC14	chr16	87493614	-	IMPA2	chr18	11999053	+
5CDS-intron	ENST00000268616	ENST00000588927		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	ZCCHC14	chr16	87493614	-	IMPA2	chr18	11999053	+
5UTR-5UTR	ENST00000360647	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000360647	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000360647	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000360647	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000360647	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000360647	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000360647	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000360647	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000360647	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000360647	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000468369	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000468369	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000468369	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000468369	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000468369	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000468369	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000468369	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000468369	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000468369	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000468369	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000484491	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000484491	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000484491	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000484491	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000484491	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000484491	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000484491	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000484491	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000484491	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000484491	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000544464	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000544464	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000544464	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000544464	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000544464	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000544464	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000544464	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000544464	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000544464	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000544464	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000492394	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000492394	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000492394	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000492394	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000492394	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000492394	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000492394	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000492394	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000492394	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000492394	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000485866	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000485866	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000485866	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000485866	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000485866	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000485866	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-5UTR	ENST00000485866	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000485866	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000485866	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
5UTR-intron	ENST00000485866	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000497929	ENST00000360772		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000497929	ENST00000359169		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000497929	ENST00000360304		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000497929	ENST00000418370		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000497929	ENST00000578202		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000497929	ENST00000354792		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-5UTR	ENST00000497929	ENST00000346322		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000497929	ENST00000583087		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000497929	ENST00000475616		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
intron-intron	ENST00000497929	ENST00000510775		TCGA	RV	PRAD	TCGA-VN-A88P-01A	ZNF148	chr3	125042153	-	MYLK	chr3	123512691	-
In-frame	ENST00000427569	ENST00000246657		TCGA	RV	PRAD	TCGA-HC-7209-01A	AARSD1	chr17	41113209	-	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000427569	ENST00000579344		TCGA	RV	PRAD	TCGA-HC-7209-01A	AARSD1	chr17	41113209	-	CCR7	chr17	38715194	-
5UTR-3CDS	ENST00000416949	ENST00000246657		TCGA	RV	PRAD	TCGA-HC-7209-01A	AARSD1	chr17	41113209	-	CCR7	chr17	38715194	-
5UTR-5UTR	ENST00000416949	ENST00000579344		TCGA	RV	PRAD	TCGA-HC-7209-01A	AARSD1	chr17	41113209	-	CCR7	chr17	38715194	-
5UTR-3CDS	ENST00000357430	ENST00000321276		TCGA	RV	PRAD	TCGA-CH-5750-01A	ACSL3	chr2	223725976	+	SGPP2	chr2	223386486	+
5UTR-3CDS	ENST00000392066	ENST00000321276		TCGA	RV	PRAD	TCGA-CH-5750-01A	ACSL3	chr2	223725976	+	SGPP2	chr2	223386486	+
Frame-shit	ENST00000261722	ENST00000450735		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000261722	ENST00000304231		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000261722	ENST00000399166		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000261722	ENST00000426485		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000261722	ENST00000500334		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535348	ENST00000450735		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535348	ENST00000304231		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535348	ENST00000399166		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535348	ENST00000426485		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000535348	ENST00000500334		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535359	ENST00000450735		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535359	ENST00000304231		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535359	ENST00000399166		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000535359	ENST00000426485		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000535359	ENST00000500334		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000542200	ENST00000450735		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000542200	ENST00000304231		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000542200	ENST00000399166		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000542200	ENST00000426485		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000542200	ENST00000500334		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000561455	ENST00000450735		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000561455	ENST00000304231		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000561455	ENST00000399166		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000561455	ENST00000426485		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
intron-intron	ENST00000561455	ENST00000500334		TCGA	RV	PRAD	TCGA-CH-5751-01A	AP3B2	chr15	83378346	-	HOMER2	chr15	83561593	-
5UTR-3CDS	ENST00000265381	ENST00000358015		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	APBA1	chr9	72287069	-	RAD23B	chr9	110068660	+
5UTR-3CDS	ENST00000265381	ENST00000416373		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	APBA1	chr9	72287069	-	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000470082	ENST00000358015		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	APBA1	chr9	72287069	-	RAD23B	chr9	110068660	+
intron-3CDS	ENST00000470082	ENST00000416373		TCGA	RV	PRAD	TCGA-KK-A8I9-01A	APBA1	chr9	72287069	-	RAD23B	chr9	110068660	+
Frame-shit	ENST00000400198	ENST00000409817		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
In-frame	ENST00000400198	ENST00000241393		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
5CDS-5UTR	ENST00000400198	ENST00000466288		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
intron-3CDS	ENST00000472226	ENST00000409817		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
intron-3CDS	ENST00000472226	ENST00000241393		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
intron-5UTR	ENST00000472226	ENST00000466288		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
intron-3CDS	ENST00000375926	ENST00000409817		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
intron-3CDS	ENST00000375926	ENST00000241393		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
intron-5UTR	ENST00000375926	ENST00000466288		TCGA	RV	PRAD	TCGA-KK-A59X-01A	ARGLU1	chr13	107219921	-	CXCR4	chr2	136873482	-
Frame-shit	ENST00000396432	ENST00000369797		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ARHGAP21	chr10	25010766	-	PDCD11	chr10	105184741	+
Frame-shit	ENST00000396432	ENST00000490787		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ARHGAP21	chr10	25010766	-	PDCD11	chr10	105184741	+
intron-3CDS	ENST00000320481	ENST00000369797		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ARHGAP21	chr10	25010766	-	PDCD11	chr10	105184741	+
intron-3CDS	ENST00000320481	ENST00000490787		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ARHGAP21	chr10	25010766	-	PDCD11	chr10	105184741	+
intron-3CDS	ENST00000493154	ENST00000369797		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ARHGAP21	chr10	25010766	-	PDCD11	chr10	105184741	+
intron-3CDS	ENST00000493154	ENST00000490787		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ARHGAP21	chr10	25010766	-	PDCD11	chr10	105184741	+
In-frame	ENST00000310343	ENST00000282251		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
In-frame	ENST00000310343	ENST00000433523		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
In-frame	ENST00000524655	ENST00000282251		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
In-frame	ENST00000524655	ENST00000433523		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000392657	ENST00000282251		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000392657	ENST00000433523		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000527272	ENST00000282251		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
intron-3CDS	ENST00000527272	ENST00000433523		TCGA	RV	PRAD	TCGA-KK-A8II-01A	ARHGAP32	chr11	128932175	-	CWF19L2	chr11	107326502	-
In-frame	ENST00000324856	ENST00000558134		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000324856	ENST00000560266		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000324856	ENST00000268220		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
5CDS-5UTR	ENST00000324856	ENST00000455959		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000457599	ENST00000558134		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000457599	ENST00000560266		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000457599	ENST00000268220		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
5CDS-5UTR	ENST00000457599	ENST00000455959		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000374152	ENST00000558134		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000374152	ENST00000560266		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000374152	ENST00000268220		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
5CDS-5UTR	ENST00000374152	ENST00000455959		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
intron-3CDS	ENST00000540690	ENST00000558134		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
intron-3CDS	ENST00000540690	ENST00000560266		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
intron-3CDS	ENST00000540690	ENST00000268220		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
intron-5UTR	ENST00000540690	ENST00000455959		TCGA	RV	PRAD	TCGA-HC-7821-01A	ARID1A	chr1	27094490	+	SEC11A	chr15	85234875	-
In-frame	ENST00000481646	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000481646	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
In-frame	ENST00000469044	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000469044	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
In-frame	ENST00000491704	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000491704	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-3CDS	ENST00000358441	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-intron	ENST00000358441	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-3CDS	ENST00000489213	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-intron	ENST00000489213	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
In-frame	ENST00000461822	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000461822	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
In-frame	ENST00000485396	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000485396	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-3CDS	ENST00000471453	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-intron	ENST00000471453	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-3CDS	ENST00000470821	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
intron-intron	ENST00000470821	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
In-frame	ENST00000393058	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000393058	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
In-frame	ENST00000538260	ENST00000264538		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
5CDS-intron	ENST00000538260	ENST00000468021		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARMC8	chr3	137993386	+	IFT57	chr3	107910490	-
Frame-shit	ENST00000369162	ENST00000367255		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369162	ENST00000356820		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369162	ENST00000423061		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369162	ENST00000448038		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369162	ENST00000341594		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369162	ENST00000265368		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000367253		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000367248		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000413186		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000466159		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000539504		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000347037		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000354674		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369162	ENST00000495090		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000522650	ENST00000367255		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000522650	ENST00000356820		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000522650	ENST00000423061		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000522650	ENST00000448038		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000522650	ENST00000341594		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000522650	ENST00000265368		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000367253		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000367248		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000413186		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000466159		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000539504		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000347037		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000354674		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000522650	ENST00000495090		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369143	ENST00000367255		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369143	ENST00000356820		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369143	ENST00000423061		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369143	ENST00000448038		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369143	ENST00000341594		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
Frame-shit	ENST00000369143	ENST00000265368		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000367253		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000367248		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000413186		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000466159		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000539504		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000347037		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000354674		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-intron	ENST00000369143	ENST00000495090		TCGA	RV	PRAD	TCGA-VP-A87C-01A	ASCC3	chr6	101315784	-	SYNE1	chr6	152563575	-
5CDS-5UTR	ENST00000373996	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-intron	ENST00000373996	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000373996	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000313400	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-intron	ENST00000313400	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000313400	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000361209	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-intron	ENST00000361209	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000361209	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000361477	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-intron	ENST00000361477	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000361477	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000288520	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-intron	ENST00000288520	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000288520	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000341734	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-intron	ENST00000341734	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000341734	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
intron-5UTR	ENST00000358637	ENST00000327473		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
intron-intron	ENST00000358637	ENST00000598107		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
intron-5UTR	ENST00000358637	ENST00000536716		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	ASTN2	chr9	119249638	-	TNFAIP8L1	chr19	4651879	+
5CDS-5UTR	ENST00000505330	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000505330	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000505330	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000505330	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000505330	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000505330	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000504381	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504381	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504381	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504381	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504381	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504381	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000507488	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000507488	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000507488	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000507488	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000507488	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000507488	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000393221	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000393221	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000393221	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000393221	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000393221	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000393221	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000533801	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000533801	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000533801	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000533801	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000533801	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000533801	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000510168	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000510168	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000510168	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000510168	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000510168	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000510168	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000508532	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000508532	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000508532	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000508532	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000508532	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000508532	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000504948	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504948	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504948	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504948	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504948	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000504948	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000513801	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000513801	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000513801	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000513801	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000513801	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000513801	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000328560	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000328560	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000328560	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000328560	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000328560	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000328560	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000428331	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000428331	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000428331	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000428331	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000428331	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000428331	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000359644	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000359644	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000359644	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000359644	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000359644	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000359644	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000422190	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000422190	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000422190	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000422190	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000422190	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000422190	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
intron-5UTR	ENST00000509150	ENST00000512055		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
intron-intron	ENST00000509150	ENST00000429747		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
intron-intron	ENST00000509150	ENST00000512332		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
intron-intron	ENST00000509150	ENST00000511604		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
intron-intron	ENST00000509150	ENST00000502818		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
intron-intron	ENST00000509150	ENST00000503204		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ATP2C1	chr3	130675023	+	CPNE4	chr3	131759165	-
5CDS-3UTR	ENST00000262030	ENST00000355327		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000262030	ENST00000261862		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000262030	ENST00000357769		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000262030	ENST00000567838		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000552919	ENST00000355327		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000552919	ENST00000261862		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-intron	ENST00000552919	ENST00000357769		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-intron	ENST00000552919	ENST00000567838		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000550162	ENST00000355327		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000550162	ENST00000261862		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-intron	ENST00000550162	ENST00000357769		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
intron-intron	ENST00000550162	ENST00000567838		TCGA	RV	PRAD	TCGA-G9-6356-01A	ATP5B	chr12	57031959	-	THSD4	chr15	72072881	+
Frame-shit	ENST00000265990	ENST00000283228		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
Frame-shit	ENST00000265990	ENST00000440835		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000265990	ENST00000537619		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000265990	ENST00000378778		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000265990	ENST00000342084		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000265990	ENST00000549308		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
3UTR-3CDS	ENST00000471217	ENST00000283228		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
3UTR-3CDS	ENST00000471217	ENST00000440835		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
3UTR-intron	ENST00000471217	ENST00000537619		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
3UTR-intron	ENST00000471217	ENST00000378778		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
3UTR-intron	ENST00000471217	ENST00000342084		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
3UTR-intron	ENST00000471217	ENST00000549308		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000544642	ENST00000283228		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000544642	ENST00000440835		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000544642	ENST00000537619		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000544642	ENST00000378778		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000544642	ENST00000342084		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000544642	ENST00000549308		TCGA	RV	PRAD	TCGA-EJ-5510-01A	BTAF1	chr10	93726514	+	PTPRR	chr12	71095103	-
Frame-shit	ENST00000375028	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375028	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375028	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375028	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375028	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375028	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375028	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375030	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375030	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375030	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375030	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375030	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375025	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375025	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375025	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375025	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375025	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375025	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375025	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8265-01B	C10orf68	chr10	32912745	+	CCDC7	chr10	32832228	+
In-frame	ENST00000378618	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
5UTR-3CDS	ENST00000536126	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
In-frame	ENST00000278460	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
In-frame	ENST00000395460	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
In-frame	ENST00000378615	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
intron-3CDS	ENST00000543718	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
3UTR-3CDS	ENST00000527268	ENST00000347785		TCGA	RV	PRAD	TCGA-G9-6377-01A	C11orf49	chr11	47074069	+	CD5	chr11	60882528	+
5CDS-intron	ENST00000438132	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000438132	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000542263	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000542263	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000417362	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000417362	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000251143	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000251143	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000543152	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000543152	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000448695	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
5CDS-intron	ENST00000448695	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
intron-intron	ENST00000544275	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
intron-intron	ENST00000544275	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
intron-intron	ENST00000538853	ENST00000569045		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
intron-intron	ENST00000538853	ENST00000268383		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	C16orf62	chr16	19621737	+	CDR2	chr16	22361170	-
Frame-shit	ENST00000357429	ENST00000406755		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
Frame-shit	ENST00000357429	ENST00000404774		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
Frame-shit	ENST00000357429	ENST00000401401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
Frame-shit	ENST00000397100	ENST00000406755		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
In-frame	ENST00000397100	ENST00000404774		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
In-frame	ENST00000397100	ENST00000401401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
Frame-shit	ENST00000397098	ENST00000406755		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
In-frame	ENST00000397098	ENST00000404774		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
In-frame	ENST00000397098	ENST00000401401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
5UTR-3CDS	ENST00000488073	ENST00000406755		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
5UTR-3CDS	ENST00000488073	ENST00000404774		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
5UTR-3CDS	ENST00000488073	ENST00000401401		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C7orf50	chr7	1166893	-	MMD2	chr7	4965163	-
Frame-shit	ENST00000313070	ENST00000409508		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000313070	ENST00000328843		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
5CDS-intron	ENST00000313070	ENST00000465593		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000334010	ENST00000409508		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000334010	ENST00000328843		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
5CDS-intron	ENST00000334010	ENST00000465593		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000412584	ENST00000409508		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000412584	ENST00000328843		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
5CDS-intron	ENST00000412584	ENST00000465593		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000449022	ENST00000409508		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
Frame-shit	ENST00000449022	ENST00000328843		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
5CDS-intron	ENST00000449022	ENST00000465593		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
intron-3CDS	ENST00000476131	ENST00000409508		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
intron-3CDS	ENST00000476131	ENST00000328843		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
intron-intron	ENST00000476131	ENST00000465593		TCGA	RV	PRAD	TCGA-EJ-7330-01A	CADPS2	chr7	122033495	-	DNAH11	chr7	21654732	+
In-frame	ENST00000377022	ENST00000601806		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000377022	ENST00000291281		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000377022	ENST00000433867		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000377022	ENST00000600194		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000377022	ENST00000595515		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
5CDS-5UTR	ENST00000377022	ENST00000593492		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000344008	ENST00000601806		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000344008	ENST00000291281		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000344008	ENST00000433867		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000344008	ENST00000600194		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
In-frame	ENST00000344008	ENST00000595515		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
5CDS-5UTR	ENST00000344008	ENST00000593492		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
intron-3CDS	ENST00000478728	ENST00000601806		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
intron-3CDS	ENST00000478728	ENST00000291281		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
intron-3CDS	ENST00000478728	ENST00000433867		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
intron-3CDS	ENST00000478728	ENST00000600194		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
intron-3CDS	ENST00000478728	ENST00000595515		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
intron-5UTR	ENST00000478728	ENST00000593492		TCGA	RV	PRAD	TCGA-J4-A67S-01A	CASZ1	chr1	10710749	-	PRKD2	chr19	47185005	-
3UTR-3CDS	ENST00000468573	ENST00000534859		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3CDS	ENST00000468573	ENST00000399639		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3CDS	ENST00000468573	ENST00000422431		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3CDS	ENST00000468573	ENST00000537238		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3CDS	ENST00000468573	ENST00000367019		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3CDS	ENST00000468573	ENST00000472886		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3UTR	ENST00000468573	ENST00000271745		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
3UTR-3UTR	ENST00000468573	ENST00000367015		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000255380	ENST00000534859		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000255380	ENST00000399639		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000255380	ENST00000422431		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000255380	ENST00000537238		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000255380	ENST00000367019		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000255380	ENST00000472886		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3UTR	ENST00000255380	ENST00000271745		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3UTR	ENST00000255380	ENST00000367015		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CHRM3	chr1	239795586	+	SYT14	chr1	210267667	+
5UTR-3CDS	ENST00000434302	ENST00000590247		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000434302	ENST00000419343		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000434302	ENST00000592786		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000434302	ENST00000379316		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000434302	ENST00000586035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000438847	ENST00000590247		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000438847	ENST00000419343		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000438847	ENST00000592786		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-3CDS	ENST00000438847	ENST00000379316		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
5UTR-5UTR	ENST00000438847	ENST00000586035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
3UTR-3CDS	ENST00000604556	ENST00000590247		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
3UTR-3CDS	ENST00000604556	ENST00000419343		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
3UTR-3CDS	ENST00000604556	ENST00000592786		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
3UTR-3CDS	ENST00000604556	ENST00000379316		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
3UTR-5UTR	ENST00000604556	ENST00000586035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000262622	ENST00000590247		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000262622	ENST00000419343		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000262622	ENST00000592786		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
intron-3CDS	ENST00000262622	ENST00000379316		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
intron-5UTR	ENST00000262622	ENST00000586035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	CHST8	chr19	34113202	+	PDCD5	chr19	33073101	+
Frame-shit	ENST00000252456	ENST00000373314		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
Frame-shit	ENST00000252456	ENST00000373312		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
5CDS-5UTR	ENST00000252456	ENST00000468379		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
Frame-shit	ENST00000592923	ENST00000373314		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
Frame-shit	ENST00000592923	ENST00000373312		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
5CDS-5UTR	ENST00000592923	ENST00000468379		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-3CDS	ENST00000535659	ENST00000373314		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-3CDS	ENST00000535659	ENST00000373312		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-5UTR	ENST00000535659	ENST00000468379		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-3CDS	ENST00000588468	ENST00000373314		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-3CDS	ENST00000588468	ENST00000373312		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-5UTR	ENST00000588468	ENST00000468379		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-3CDS	ENST00000544952	ENST00000373314		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-3CDS	ENST00000544952	ENST00000373312		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
intron-5UTR	ENST00000544952	ENST00000468379		TCGA	RV	PRAD	TCGA-EJ-7327-01A	CNN1	chr19	11661138	+	FAM129B	chr9	130294057	-
In-frame	ENST00000374595	ENST00000374566		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
5CDS-intron	ENST00000374595	ENST00000374557		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
In-frame	ENST00000325551	ENST00000374566		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
5CDS-intron	ENST00000325551	ENST00000374557		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
In-frame	ENST00000325580	ENST00000374566		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
5CDS-intron	ENST00000325580	ENST00000374557		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
intron-3CDS	ENST00000374594	ENST00000374566		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
intron-intron	ENST00000374594	ENST00000374557		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
intron-3CDS	ENST00000488130	ENST00000374566		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
intron-intron	ENST00000488130	ENST00000374557		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
In-frame	ENST00000374593	ENST00000374566		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
5CDS-intron	ENST00000374593	ENST00000374557		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	CTNNAL1	chr9	111754912	-	EPB41L4B	chr9	111945077	-
In-frame	ENST00000434457	ENST00000519685		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
In-frame	ENST00000434457	ENST00000522948		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
5CDS-5UTR	ENST00000434457	ENST00000251822		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
5CDS-3UTR	ENST00000434457	ENST00000523918		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
In-frame	ENST00000602925	ENST00000519685		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
In-frame	ENST00000602925	ENST00000522948		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
5CDS-5UTR	ENST00000602925	ENST00000251822		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
5CDS-3UTR	ENST00000602925	ENST00000523918		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
In-frame	ENST00000380432	ENST00000519685		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
In-frame	ENST00000380432	ENST00000522948		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
5CDS-5UTR	ENST00000380432	ENST00000251822		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
5CDS-3UTR	ENST00000380432	ENST00000523918		TCGA	RV	PRAD	TCGA-EJ-7785-01A	DENND4C	chr9	19357152	+	RHOBTB2	chr8	22861938	+
intron-3CDS	ENST00000462274	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
intron-3CDS	ENST00000462274	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000338785	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000338785	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000451934	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000451934	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000321219	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000321219	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000339659	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000339659	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000398960	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000398960	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000398956	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
In-frame	ENST00000398956	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
intron-3CDS	ENST00000455387	ENST00000609713		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
intron-3CDS	ENST00000455387	ENST00000288309		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	DYRK1A	chr21	38792686	+	KCNJ6	chr21	39087434	-
intron-3CDS	ENST00000398907	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398907	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398907	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398907	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3UTR	ENST00000398907	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-intron	ENST00000398907	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398905	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398905	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398905	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000398905	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3UTR	ENST00000398905	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-intron	ENST00000398905	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000288319	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000288319	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000288319	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000288319	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3UTR	ENST00000288319	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-intron	ENST00000288319	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000398897	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000398897	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000398897	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000398897	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3UTR	ENST00000398897	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-intron	ENST00000398897	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398911	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398911	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398911	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398911	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-3UTR	ENST00000398911	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-intron	ENST00000398911	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398910	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398910	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398910	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398910	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-3UTR	ENST00000398910	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-intron	ENST00000398910	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000417133	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000417133	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000417133	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000417133	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-3UTR	ENST00000417133	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-intron	ENST00000417133	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000442448	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000442448	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000442448	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000442448	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-3UTR	ENST00000442448	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-intron	ENST00000442448	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000453032	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000453032	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000453032	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000453032	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3UTR	ENST00000453032	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-intron	ENST00000453032	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398919	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398919	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398919	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
Frame-shit	ENST00000398919	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-3UTR	ENST00000398919	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5CDS-intron	ENST00000398919	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000429727	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000429727	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000429727	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3CDS	ENST00000429727	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-3UTR	ENST00000429727	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-intron	ENST00000429727	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000485493	ENST00000412704		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000485493	ENST00000376887		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000485493	ENST00000536256		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3CDS	ENST00000485493	ENST00000431522		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-3UTR	ENST00000485493	ENST00000538287		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
5UTR-intron	ENST00000485493	ENST00000474158		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ERG	chr21	39947586	-	ABCC4	chr13	95900007	-
intron-5UTR	ENST00000398907	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398907	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398907	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398907	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398905	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398905	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398905	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000398905	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000288319	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000288319	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000288319	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000288319	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000398897	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000398897	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000398897	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000398897	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398911	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398911	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398911	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398911	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398910	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398910	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398910	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398910	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000417133	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000417133	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000417133	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000417133	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000442448	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000442448	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000442448	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000442448	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000453032	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000453032	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000453032	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000453032	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398919	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398919	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398919	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398919	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000429727	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000429727	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000429727	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000429727	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000485493	ENST00000332149		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000485493	ENST00000398585		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000485493	ENST00000458356		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000485493	ENST00000497881		TCGA	RV	PRAD	TCGA-J4-A67S-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42870116	-
In-frame	ENST00000357410	ENST00000372727		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000357410	ENST00000414310		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000357410	ENST00000243918		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000357410	ENST00000426004		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
5CDS-3UTR	ENST00000357410	ENST00000479779		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000327619	ENST00000372727		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000327619	ENST00000414310		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000327619	ENST00000243918		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000327619	ENST00000426004		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
5CDS-3UTR	ENST00000327619	ENST00000479779		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
intron-3CDS	ENST00000497428	ENST00000372727		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
intron-3CDS	ENST00000497428	ENST00000414310		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
intron-3CDS	ENST00000497428	ENST00000243918		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
intron-3CDS	ENST00000497428	ENST00000426004		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
intron-3UTR	ENST00000497428	ENST00000479779		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000317304	ENST00000372727		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000317304	ENST00000414310		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000317304	ENST00000243918		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
In-frame	ENST00000317304	ENST00000426004		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
5CDS-3UTR	ENST00000317304	ENST00000479779		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EYA2	chr20	45725807	+	SYS1	chr20	43994259	+
5UTR-3CDS	ENST00000033079	ENST00000323760		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000033079	ENST00000357274		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000033079	ENST00000348983		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000033079	ENST00000356505		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000033079	ENST00000415130		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000033079	ENST00000513970		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000033079	ENST00000514555		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000323760		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000357274		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000348983		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000356505		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000415130		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000513970		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000425075	ENST00000514555		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000323760		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000357274		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000348983		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000356505		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000415130		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000513970		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000420893	ENST00000514555		TCGA	RV	PRAD	TCGA-CH-5740-01A	FAM13B	chr5	137368471	-	CDC25C	chr5	137627805	-
5UTR-3CDS	ENST00000396958	ENST00000340308		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-3CDS	ENST00000396958	ENST00000447932		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-3CDS	ENST00000396958	ENST00000326232		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-intron	ENST00000396958	ENST00000429996		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-intron	ENST00000396958	ENST00000461089		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-3CDS	ENST00000293981	ENST00000340308		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-3CDS	ENST00000293981	ENST00000447932		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-3CDS	ENST00000293981	ENST00000326232		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-intron	ENST00000293981	ENST00000429996		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-intron	ENST00000293981	ENST00000461089		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-3CDS	ENST00000572006	ENST00000340308		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-3CDS	ENST00000572006	ENST00000447932		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-3CDS	ENST00000572006	ENST00000326232		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-intron	ENST00000572006	ENST00000429996		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
5UTR-intron	ENST00000572006	ENST00000461089		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-3CDS	ENST00000572786	ENST00000340308		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-3CDS	ENST00000572786	ENST00000447932		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-3CDS	ENST00000572786	ENST00000326232		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-intron	ENST00000572786	ENST00000429996		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
intron-intron	ENST00000572786	ENST00000461089		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	FLYWCH2	chr16	2933367	+	SLC37A3	chr7	140037149	-
In-frame	ENST00000318789	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
In-frame	ENST00000318789	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000318789	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000318789	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000318789	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000475937	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000475937	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000475937	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000475937	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000475937	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
In-frame	ENST00000493089	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
In-frame	ENST00000493089	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000493089	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000493089	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000493089	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000484350	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000484350	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000484350	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000484350	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000484350	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
intron-3CDS	ENST00000318779	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
intron-3CDS	ENST00000318779	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
intron-intron	ENST00000318779	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
intron-intron	ENST00000318779	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
intron-intron	ENST00000318779	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000491238	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000491238	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000491238	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000491238	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000491238	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000498215	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000498215	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000498215	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000498215	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000498215	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000468577	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
Frame-shit	ENST00000468577	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000468577	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000468577	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5CDS-intron	ENST00000468577	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5UTR-3CDS	ENST00000472382	ENST00000263960		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5UTR-3CDS	ENST00000472382	ENST00000409398		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5UTR-intron	ENST00000472382	ENST00000488445		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5UTR-intron	ENST00000472382	ENST00000545340		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5UTR-intron	ENST00000472382	ENST00000409010		TCGA	RV	PRAD	TCGA-J4-A83N-01A	FOXP1	chr3	71090479	-	COQ10B	chr2	198334794	+
5UTR-3CDS	ENST00000368655	ENST00000271915		TCGA	RV	PRAD	TCGA-HC-8265-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-3CDS	ENST00000368655	ENST00000361147		TCGA	RV	PRAD	TCGA-HC-8265-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-3CDS	ENST00000368655	ENST00000358505		TCGA	RV	PRAD	TCGA-HC-8265-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-intron	ENST00000368655	ENST00000515643		TCGA	RV	PRAD	TCGA-HC-8265-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-5UTR	ENST00000368655	ENST00000368747		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	GATAD2B	chr1	153895209	-	LELP1	chr1	153177163	+
Frame-shit	ENST00000373365	ENST00000287152		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000394362		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000373213		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000373216		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000229913		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000373215		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000538893		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
Frame-shit	ENST00000373365	ENST00000541946		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
5CDS-intron	ENST00000373365	ENST00000465719		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000287152		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000394362		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000373213		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000373216		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000229913		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000373215		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000538893		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-3CDS	ENST00000470973	ENST00000541946		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
intron-intron	ENST00000470973	ENST00000465719		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	GLO1	chr6	38670747	-	KIF6	chr6	39387779	-
In-frame	ENST00000248553	ENST00000392474		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000538733		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000337174		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000347034		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000324774		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000545538		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000412367		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000404169		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000402834		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000446440		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000392473		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000248553	ENST00000535524		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
In-frame	ENST00000429938	ENST00000392474		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000538733		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000337174		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000347034		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000324774		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000545538		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000412367		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000404169		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000402834		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000446440		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000392473		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
5CDS-intron	ENST00000429938	ENST00000535524		TCGA	RV	PRAD	TCGA-XA-A8JR-01A	HSPB1	chr7	75933612	+	CAMKK2	chr12	121682418	-
In-frame	ENST00000258886	ENST00000220166		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	IREB2	chr15	78732223	+	CTSH	chr15	79231513	-
5CDS-intron	ENST00000258886	ENST00000534533		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	IREB2	chr15	78732223	+	CTSH	chr15	79231513	-
In-frame	ENST00000560440	ENST00000220166		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	IREB2	chr15	78732223	+	CTSH	chr15	79231513	-
5CDS-intron	ENST00000560440	ENST00000534533		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	IREB2	chr15	78732223	+	CTSH	chr15	79231513	-
intron-3CDS	ENST00000559427	ENST00000220166		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	IREB2	chr15	78732223	+	CTSH	chr15	79231513	-
intron-intron	ENST00000559427	ENST00000534533		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	IREB2	chr15	78732223	+	CTSH	chr15	79231513	-
5CDS-intron	ENST00000220244	ENST00000592005		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000220244	ENST00000245121		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000220244	ENST00000356157		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000356249	ENST00000592005		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000356249	ENST00000245121		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000356249	ENST00000356157		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000394685	ENST00000592005		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000394685	ENST00000245121		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5CDS-intron	ENST00000394685	ENST00000356157		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIAA1199	chr15	81201647	+	KATNAL2	chr18	44572828	+
5UTR-3CDS	ENST00000587309	ENST00000251413		TCGA	RV	PRAD	TCGA-HC-8216-01A	KIF18B	chr17	43024996	-	TUBG1	chr17	40764093	+
intron-3CDS	ENST00000438933	ENST00000251413		TCGA	RV	PRAD	TCGA-HC-8216-01A	KIF18B	chr17	43024996	-	TUBG1	chr17	40764093	+
5UTR-3CDS	ENST00000593135	ENST00000251413		TCGA	RV	PRAD	TCGA-HC-8216-01A	KIF18B	chr17	43024996	-	TUBG1	chr17	40764093	+
5UTR-3CDS	ENST00000339151	ENST00000251413		TCGA	RV	PRAD	TCGA-HC-8216-01A	KIF18B	chr17	43024996	-	TUBG1	chr17	40764093	+
intron-3CDS	ENST00000590129	ENST00000251413		TCGA	RV	PRAD	TCGA-HC-8216-01A	KIF18B	chr17	43024996	-	TUBG1	chr17	40764093	+
intron-intron	ENST00000513024	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000513024	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509638	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000508501	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512946	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000313860	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512632	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000512820	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000503057	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000511496	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000514096	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509277	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000396595	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5CDS-intron	ENST00000381753	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000509454	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000452533		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000553257		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000549701		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000358214		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000548671		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000266481		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000547312		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000414834		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000515785	ENST00000381000		TCGA	RV	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41702059	+	DNM1L	chr12	32905677	+
5UTR-intron	ENST00000513024	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000503431		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000284440		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000504818		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000508768		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000512788		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
In-frame	ENST00000296755	ENST00000267842		TCGA	RV	PRAD	TCGA-G9-6348-01A	MAP1B	chr5	71411626	+	SLC27A2	chr15	50489697	+
In-frame	ENST00000296755	ENST00000380902		TCGA	RV	PRAD	TCGA-G9-6348-01A	MAP1B	chr5	71411626	+	SLC27A2	chr15	50489697	+
5CDS-5UTR	ENST00000296755	ENST00000544960		TCGA	RV	PRAD	TCGA-G9-6348-01A	MAP1B	chr5	71411626	+	SLC27A2	chr15	50489697	+
3UTR-3CDS	ENST00000504183	ENST00000267842		TCGA	RV	PRAD	TCGA-G9-6348-01A	MAP1B	chr5	71411626	+	SLC27A2	chr15	50489697	+
3UTR-3CDS	ENST00000504183	ENST00000380902		TCGA	RV	PRAD	TCGA-G9-6348-01A	MAP1B	chr5	71411626	+	SLC27A2	chr15	50489697	+
3UTR-5UTR	ENST00000504183	ENST00000544960		TCGA	RV	PRAD	TCGA-G9-6348-01A	MAP1B	chr5	71411626	+	SLC27A2	chr15	50489697	+
In-frame	ENST00000359015	ENST00000275162		TCGA	RV	PRAD	TCGA-VP-A875-01A	MAP3K5	chr6	136972122	-	CLVS2	chr6	123369767	+
In-frame	ENST00000359015	ENST00000368438		TCGA	RV	PRAD	TCGA-VP-A875-01A	MAP3K5	chr6	136972122	-	CLVS2	chr6	123369767	+
5UTR-3CDS	ENST00000355845	ENST00000275162		TCGA	RV	PRAD	TCGA-VP-A875-01A	MAP3K5	chr6	136972122	-	CLVS2	chr6	123369767	+
5UTR-3CDS	ENST00000355845	ENST00000368438		TCGA	RV	PRAD	TCGA-VP-A875-01A	MAP3K5	chr6	136972122	-	CLVS2	chr6	123369767	+
intron-3CDS	ENST00000463140	ENST00000275162		TCGA	RV	PRAD	TCGA-VP-A875-01A	MAP3K5	chr6	136972122	-	CLVS2	chr6	123369767	+
intron-3CDS	ENST00000463140	ENST00000368438		TCGA	RV	PRAD	TCGA-VP-A875-01A	MAP3K5	chr6	136972122	-	CLVS2	chr6	123369767	+
In-frame	ENST00000372009	ENST00000394026		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
In-frame	ENST00000372009	ENST00000238709		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
In-frame	ENST00000372009	ENST00000334571		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
5CDS-intron	ENST00000372009	ENST00000554920		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
5CDS-intron	ENST00000372009	ENST00000555552		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
In-frame	ENST00000361297	ENST00000394026		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
In-frame	ENST00000361297	ENST00000238709		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
In-frame	ENST00000361297	ENST00000334571		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
5CDS-intron	ENST00000361297	ENST00000554920		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
5CDS-intron	ENST00000361297	ENST00000555552		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
intron-3CDS	ENST00000477968	ENST00000394026		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
intron-3CDS	ENST00000477968	ENST00000238709		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
intron-3CDS	ENST00000477968	ENST00000334571		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
intron-intron	ENST00000477968	ENST00000554920		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
intron-intron	ENST00000477968	ENST00000555552		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	MAST2	chr1	46474043	+	COQ6	chr14	74425674	+
Frame-shit	ENST00000536774	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000536774	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000536774	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000536774	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000536774	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000536774	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000536774	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000536774	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000327441	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000327441	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000539062	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000539062	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000556451	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000556451	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000396294	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000396294	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000545536	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000545536	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
Frame-shit	ENST00000537471	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
5CDS-intron	ENST00000537471	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000604948		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000557565		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000250377		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000321130		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000534898		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000603544		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000539174	ENST00000605870		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-intron	ENST00000539174	ENST00000603588		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	MIPOL1	chr14	37777724	+	KIAA0391	chr14	35742641	+
intron-3CDS	ENST00000421797	ENST00000339336		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000421797	ENST00000504451		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000429546	ENST00000339336		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000429546	ENST00000504451		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000352689	ENST00000339336		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000352689	ENST00000504451		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000498778	ENST00000339336		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
intron-3CDS	ENST00000498778	ENST00000504451		TCGA	RV	PRAD	TCGA-HC-7821-01A	MKLN1	chr7	130887733	+	AMTN	chr4	71394440	+
5UTR-3CDS	ENST00000393223	ENST00000334274		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000393223	ENST00000530171		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000393223	ENST00000432887		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000393223	ENST00000531632		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000393223	ENST00000324357		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-3CDS	ENST00000346299	ENST00000334274		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000346299	ENST00000530171		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000346299	ENST00000432887		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000346299	ENST00000531632		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000346299	ENST00000324357		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-3CDS	ENST00000409459	ENST00000334274		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000409459	ENST00000530171		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000409459	ENST00000432887		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000409459	ENST00000531632		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000409459	ENST00000324357		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-3CDS	ENST00000352297	ENST00000334274		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000352297	ENST00000530171		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000352297	ENST00000432887		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000352297	ENST00000531632		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
5UTR-intron	ENST00000352297	ENST00000324357		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-3CDS	ENST00000484818	ENST00000334274		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000484818	ENST00000530171		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000484818	ENST00000432887		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000484818	ENST00000531632		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
intron-intron	ENST00000484818	ENST00000324357		TCGA	RV	PRAD	TCGA-ZG-A9L0-01A	MTMR2	chr11	95647406	-	TCP11L1	chr11	33094020	+
In-frame	ENST00000369981	ENST00000357731		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369981	ENST00000306821		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-intron	ENST00000369981	ENST00000434200		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-5UTR	ENST00000369981	ENST00000467479		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369985	ENST00000357731		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369985	ENST00000306821		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-intron	ENST00000369985	ENST00000434200		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-5UTR	ENST00000369985	ENST00000467479		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369977	ENST00000357731		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369977	ENST00000306821		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-intron	ENST00000369977	ENST00000434200		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-5UTR	ENST00000369977	ENST00000467479		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369975	ENST00000357731		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
In-frame	ENST00000369975	ENST00000306821		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-intron	ENST00000369975	ENST00000434200		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5CDS-5UTR	ENST00000369975	ENST00000467479		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000462633	ENST00000357731		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000462633	ENST00000306821		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
intron-intron	ENST00000462633	ENST00000434200		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
intron-5UTR	ENST00000462633	ENST00000467479		TCGA	RV	PRAD	TCGA-HC-8262-01A	MYO6	chr6	76558248	+	NEGR1	chr1	72163822	-
5UTR-3CDS	ENST00000374875	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5UTR-3UTR	ENST00000374875	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
In-frame	ENST00000265371	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000265371	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000374867	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000374867	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000395995	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000395995	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000374821	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000374821	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000374822	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000374822	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000374823	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000374823	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000374816	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000374816	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
Frame-shit	ENST00000432372	ENST00000371953		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000432372	ENST00000472832		TCGA	RV	PRAD	TCGA-HC-A48F-01A	NRP1	chr10	33619636	-	PTEN	chr10	89717610	+
5CDS-3UTR	ENST00000351960	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000351960	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000351960	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000358965	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000358965	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000358965	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000393695	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000393695	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000393695	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000543450	ENST00000318789		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000543450	ENST00000475937		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000493089		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000484350		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000318779		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000491238		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000498215		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000468577		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000543450	ENST00000472382		TCGA	RV	PRAD	TCGA-CH-5764-01A	NUMA1	chr11	71713911	-	FOXP1	chr3	71007472	-
Frame-shit	ENST00000285968	ENST00000005340		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
5CDS-intron	ENST00000285968	ENST00000575458		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
5CDS-5UTR	ENST00000285968	ENST00000574642		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
intron-3CDS	ENST00000440390	ENST00000005340		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
intron-intron	ENST00000440390	ENST00000575458		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
intron-5UTR	ENST00000440390	ENST00000574642		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
intron-3CDS	ENST00000489493	ENST00000005340		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
intron-intron	ENST00000489493	ENST00000575458		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
intron-5UTR	ENST00000489493	ENST00000574642		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	NUP205	chr7	135330979	+	DVL2	chr17	7133474	-
Frame-shit	ENST00000219022	ENST00000435706		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	OLFM4	chr13	53626192	+	TOP2B	chr3	25674074	-
Frame-shit	ENST00000219022	ENST00000264331		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	OLFM4	chr13	53626192	+	TOP2B	chr3	25674074	-
5CDS-intron	ENST00000219022	ENST00000542520		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	OLFM4	chr13	53626192	+	TOP2B	chr3	25674074	-
5CDS-intron	ENST00000219022	ENST00000540199		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	OLFM4	chr13	53626192	+	TOP2B	chr3	25674074	-
5CDS-intron	ENST00000219022	ENST00000475717		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	OLFM4	chr13	53626192	+	TOP2B	chr3	25674074	-
5UTR-intron	ENST00000360540	ENST00000276480		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000360540	ENST00000522102		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5CDS-intron	ENST00000544451	ENST00000276480		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5CDS-intron	ENST00000544451	ENST00000522102		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000519559	ENST00000276480		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000519559	ENST00000522102		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000522514	ENST00000276480		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000522514	ENST00000522102		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000521344	ENST00000276480		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000521344	ENST00000522102		TCGA	RV	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53159224	-
5CDS-intron	ENST00000286091	ENST00000209875		TCGA	RV	PRAD	TCGA-CH-5746-01A	PDIA4	chr7	148700154	-	CBX5	chr12	54673955	-
5CDS-intron	ENST00000286091	ENST00000439541		TCGA	RV	PRAD	TCGA-CH-5746-01A	PDIA4	chr7	148700154	-	CBX5	chr12	54673955	-
5CDS-intron	ENST00000286091	ENST00000550411		TCGA	RV	PRAD	TCGA-CH-5746-01A	PDIA4	chr7	148700154	-	CBX5	chr12	54673955	-
5CDS-5UTR	ENST00000263666	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-5UTR	ENST00000263666	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-5UTR	ENST00000263666	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-intron	ENST00000263666	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000466780	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000466780	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000466780	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-intron	ENST00000466780	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-5UTR	ENST00000308537	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-5UTR	ENST00000308537	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-5UTR	ENST00000308537	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-intron	ENST00000308537	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000462146	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000462146	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000462146	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-intron	ENST00000462146	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000535920	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000535920	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000535920	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-intron	ENST00000535920	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000479530	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000479530	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000479530	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-intron	ENST00000479530	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000466348	ENST00000396671		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000466348	ENST00000356447		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-5UTR	ENST00000466348	ENST00000416420		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
intron-intron	ENST00000466348	ENST00000280696		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	PDZRN3	chr3	73651505	-	THRB	chr3	24378862	-
5CDS-5UTR	ENST00000282605	ENST00000517913		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-intron	ENST00000282605	ENST00000435422		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000282605	ENST00000447401		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000282605	ENST00000337851		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
intron-5UTR	ENST00000515554	ENST00000517913		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
intron-intron	ENST00000515554	ENST00000435422		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
intron-5UTR	ENST00000515554	ENST00000447401		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
intron-5UTR	ENST00000515554	ENST00000337851		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000361895	ENST00000517913		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-intron	ENST00000361895	ENST00000435422		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000361895	ENST00000447401		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000361895	ENST00000337851		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000402835	ENST00000517913		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-intron	ENST00000402835	ENST00000435422		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000402835	ENST00000447401		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000402835	ENST00000337851		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000395003	ENST00000517913		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-intron	ENST00000395003	ENST00000435422		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000395003	ENST00000447401		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
5CDS-5UTR	ENST00000395003	ENST00000337851		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	PHF15	chr5	133873773	+	SGCD	chr5	155756544	+
In-frame	ENST00000257821	ENST00000379249		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000257821	ENST00000379264		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000257821	ENST00000379272		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000379255		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000296869		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000379246		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000379244		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000544770		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000543479		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000477640		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000357096		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000379240		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000257821	ENST00000431707		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000323180	ENST00000379249		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000323180	ENST00000379264		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000323180	ENST00000379272		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000379255		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000296869		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000379246		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000379244		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000544770		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000543479		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000477640		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000357096		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000379240		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000323180	ENST00000431707		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000418153	ENST00000379249		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000418153	ENST00000379264		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000418153	ENST00000379272		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000379255		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000296869		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000379246		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000379244		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000544770		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000543479		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000477640		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000357096		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000379240		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
5CDS-intron	ENST00000418153	ENST00000431707		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-3CDS	ENST00000527753	ENST00000379249		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-3CDS	ENST00000527753	ENST00000379264		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-3CDS	ENST00000527753	ENST00000379272		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000379255		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000296869		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000379246		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000379244		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000544770		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000543479		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000477640		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000357096		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000379240		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
intron-intron	ENST00000527753	ENST00000431707		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	PHF21A	chr11	46098305	-	ACSL6	chr5	131309093	-
In-frame	ENST00000531066	ENST00000372330		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PLEKHA7	chr11	16872738	-	MMP9	chr20	44638505	+
In-frame	ENST00000355661	ENST00000372330		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PLEKHA7	chr11	16872738	-	MMP9	chr20	44638505	+
In-frame	ENST00000448080	ENST00000372330		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PLEKHA7	chr11	16872738	-	MMP9	chr20	44638505	+
intron-3CDS	ENST00000532079	ENST00000372330		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PLEKHA7	chr11	16872738	-	MMP9	chr20	44638505	+
intron-3CDS	ENST00000332954	ENST00000372330		TCGA	RV	PRAD	TCGA-EJ-7785-01A	PLEKHA7	chr11	16872738	-	MMP9	chr20	44638505	+
In-frame	ENST00000338368	ENST00000523111		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000338368	ENST00000521346		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000338368	ENST00000517630		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000338368	ENST00000520809		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
In-frame	ENST00000314191	ENST00000523111		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000314191	ENST00000521346		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000314191	ENST00000517630		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000314191	ENST00000520809		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5UTR-3CDS	ENST00000523565	ENST00000523111		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5UTR-5UTR	ENST00000523565	ENST00000521346		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5UTR-5UTR	ENST00000523565	ENST00000517630		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5UTR-5UTR	ENST00000523565	ENST00000520809		TCGA	RV	PRAD	TCGA-KK-A8IB-01A	PRKDC	chr8	48866180	-	UBE2V2	chr8	48955593	+
5CDS-intron	ENST00000418331	ENST00000520500		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
5CDS-intron	ENST00000418331	ENST00000221138		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
5CDS-intron	ENST00000418331	ENST00000518564		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
intron-intron	ENST00000440289	ENST00000520500		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
intron-intron	ENST00000440289	ENST00000221138		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
intron-intron	ENST00000440289	ENST00000518564		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
intron-intron	ENST00000526550	ENST00000520500		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
intron-intron	ENST00000526550	ENST00000221138		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
intron-intron	ENST00000526550	ENST00000518564		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	PTPRJ	chr11	48168515	+	PPP2CB	chr8	30648831	-
Frame-shit	ENST00000424085	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000424085	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000424085	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000424085	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000424085	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000257075	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000257075	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000257075	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000257075	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000257075	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000373747	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000373747	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000373747	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000373747	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000373747	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000426105	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000426105	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000426105	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000426105	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000426105	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000440538	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000440538	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000440538	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000440538	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000440538	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
In-frame	ENST00000373741	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
In-frame	ENST00000373741	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
In-frame	ENST00000373741	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000373741	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000373741	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000423018	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000423018	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000423018	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000423018	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000423018	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
In-frame	ENST00000373742	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
In-frame	ENST00000373742	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
In-frame	ENST00000373742	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000373742	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
5CDS-intron	ENST00000373742	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000490546	ENST00000355875		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000490546	ENST00000366541		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
intron-3CDS	ENST00000490546	ENST00000343783		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000490546	ENST00000391846		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
intron-intron	ENST00000490546	ENST00000496361		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PUM1	chr1	31501643	-	SDCCAG8	chr1	243493842	+
Frame-shit	ENST00000325874	ENST00000431231		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
Frame-shit	ENST00000325874	ENST00000437668		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000325874	ENST00000582409		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000325874	ENST00000443378		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
intron-3CDS	ENST00000581280	ENST00000431231		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
intron-3CDS	ENST00000581280	ENST00000437668		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
intron-3UTR	ENST00000581280	ENST00000582409		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
intron-5UTR	ENST00000581280	ENST00000443378		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
Frame-shit	ENST00000394744	ENST00000431231		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
Frame-shit	ENST00000394744	ENST00000437668		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000394744	ENST00000582409		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000394744	ENST00000443378		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	RAB11FIP4	chr17	29852248	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000274376	ENST00000504376		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5CDS-5UTR	ENST00000274376	ENST00000382254		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5CDS-5UTR	ENST00000274376	ENST00000522262		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5CDS-intron	ENST00000274376	ENST00000521384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000456692	ENST00000504376		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000456692	ENST00000382254		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000456692	ENST00000522262		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-intron	ENST00000456692	ENST00000521384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000512763	ENST00000504376		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000512763	ENST00000382254		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000512763	ENST00000522262		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-intron	ENST00000512763	ENST00000521384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000506290	ENST00000504376		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000506290	ENST00000382254		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-5UTR	ENST00000506290	ENST00000522262		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
5UTR-intron	ENST00000506290	ENST00000521384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	RASA1	chr5	86564807	+	CDH12	chr5	22212752	-
Frame-shit	ENST00000558480	ENST00000450735		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000558480	ENST00000304231		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000558480	ENST00000399166		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000558480	ENST00000426485		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000558480	ENST00000500334		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000419573	ENST00000450735		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000419573	ENST00000304231		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000419573	ENST00000399166		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
Frame-shit	ENST00000419573	ENST00000426485		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
5CDS-intron	ENST00000419573	ENST00000500334		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560334	ENST00000450735		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560334	ENST00000304231		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560334	ENST00000399166		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000560334	ENST00000426485		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-intron	ENST00000560334	ENST00000500334		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000394745	ENST00000450735		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000394745	ENST00000304231		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000394745	ENST00000399166		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-3CDS	ENST00000394745	ENST00000426485		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
intron-intron	ENST00000394745	ENST00000500334		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	RASGRF1	chr15	79382565	-	HOMER2	chr15	83561593	-
In-frame	ENST00000253363	ENST00000305479		TCGA	RV	PRAD	TCGA-EJ-5514-01A	RBM39	chr20	34300941	-	WFDC13	chr20	44333083	+
In-frame	ENST00000361162	ENST00000305479		TCGA	RV	PRAD	TCGA-EJ-5514-01A	RBM39	chr20	34300941	-	WFDC13	chr20	44333083	+
In-frame	ENST00000528062	ENST00000305479		TCGA	RV	PRAD	TCGA-EJ-5514-01A	RBM39	chr20	34300941	-	WFDC13	chr20	44333083	+
In-frame	ENST00000407261	ENST00000305479		TCGA	RV	PRAD	TCGA-EJ-5514-01A	RBM39	chr20	34300941	-	WFDC13	chr20	44333083	+
intron-3CDS	ENST00000397370	ENST00000305479		TCGA	RV	PRAD	TCGA-EJ-5514-01A	RBM39	chr20	34300941	-	WFDC13	chr20	44333083	+
intron-3CDS	ENST00000463098	ENST00000305479		TCGA	RV	PRAD	TCGA-EJ-5514-01A	RBM39	chr20	34300941	-	WFDC13	chr20	44333083	+
In-frame	ENST00000361756	ENST00000245932		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
5CDS-3UTR	ENST00000361756	ENST00000586619		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3CDS	ENST00000533380	ENST00000245932		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3UTR	ENST00000533380	ENST00000586619		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3CDS	ENST00000393713	ENST00000245932		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3UTR	ENST00000393713	ENST00000586619		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
3UTR-3CDS	ENST00000490867	ENST00000245932		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
3UTR-3UTR	ENST00000490867	ENST00000586619		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3CDS	ENST00000545854	ENST00000245932		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3UTR	ENST00000545854	ENST00000586619		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3CDS	ENST00000530137	ENST00000245932		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-3UTR	ENST00000530137	ENST00000586619		TCGA	RV	PRAD	TCGA-V1-A9OA-01A	RNF121	chr11	71668310	+	VASP	chr19	46020921	+
intron-intron	ENST00000380394	ENST00000514455		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000511566		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000376817		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000380394	ENST00000512805		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000504726		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000511900		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000456394		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380394	ENST00000505461		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000514455		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000511566		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000376817		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000498815	ENST00000512805		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000504726		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000511900		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000456394		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000498815	ENST00000505461		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000514455		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000511566		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000376817		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000380384	ENST00000512805		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000504726		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000511900		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000456394		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380384	ENST00000505461		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000514455		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000511566		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000376817		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-5UTR	ENST00000315377	ENST00000512805		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000504726		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000511900		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000456394		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
5CDS-intron	ENST00000315377	ENST00000505461		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000514455		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000511566		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000376817		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000380381	ENST00000512805		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000504726		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000511900		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000456394		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000380381	ENST00000505461		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	RPS6	chr9	19376283	-	GNB2L1	chr5	180670914	-
In-frame	ENST00000507668	ENST00000570137		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000507668	ENST00000562812		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000507668	ENST00000566173		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000507668	ENST00000563890		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
5CDS-5UTR	ENST00000507668	ENST00000562753		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512972	ENST00000570137		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512972	ENST00000562812		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512972	ENST00000566173		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512972	ENST00000563890		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
5CDS-5UTR	ENST00000512972	ENST00000562753		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000509193	ENST00000570137		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000509193	ENST00000562812		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000509193	ENST00000566173		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000509193	ENST00000563890		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
5CDS-5UTR	ENST00000509193	ENST00000562753		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512721	ENST00000570137		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512721	ENST00000562812		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512721	ENST00000566173		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
In-frame	ENST00000512721	ENST00000563890		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
5CDS-5UTR	ENST00000512721	ENST00000562753		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000513907	ENST00000570137		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000513907	ENST00000562812		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000513907	ENST00000566173		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
intron-3CDS	ENST00000513907	ENST00000563890		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
intron-5UTR	ENST00000513907	ENST00000562753		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79551715	-	CDYL2	chr16	80719026	-
5UTR-3CDS	ENST00000402198	ENST00000343023		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000402198	ENST00000354230		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000402198	ENST00000303887		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000402466	ENST00000343023		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000402466	ENST00000354230		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000402466	ENST00000303887		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000406341	ENST00000343023		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000406341	ENST00000354230		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
5UTR-3CDS	ENST00000406341	ENST00000303887		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000407969	ENST00000343023		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000407969	ENST00000354230		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000407969	ENST00000303887		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000302463	ENST00000343023		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000302463	ENST00000354230		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000302463	ENST00000303887		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000488236	ENST00000343023		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000488236	ENST00000354230		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
intron-3CDS	ENST00000488236	ENST00000303887		TCGA	RV	PRAD	TCGA-HC-7233-01A	SETD5	chr3	9439661	+	MCM7	chr7	99696338	-
Frame-shit	ENST00000538303	ENST00000260641		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000538303	ENST00000476840		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000538303	ENST00000542850		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000538303	ENST00000377982		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
Frame-shit	ENST00000379343	ENST00000260641		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000379343	ENST00000476840		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000379343	ENST00000542850		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000379343	ENST00000377982		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5UTR-3CDS	ENST00000357055	ENST00000260641		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5UTR-intron	ENST00000357055	ENST00000476840		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5UTR-intron	ENST00000357055	ENST00000542850		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5UTR-intron	ENST00000357055	ENST00000377982		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
Frame-shit	ENST00000435660	ENST00000260641		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000435660	ENST00000476840		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000435660	ENST00000542850		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000435660	ENST00000377982		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
Frame-shit	ENST00000282587	ENST00000260641		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000282587	ENST00000476840		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000282587	ENST00000542850		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000282587	ENST00000377982		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
intron-3CDS	ENST00000406369	ENST00000260641		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
intron-intron	ENST00000406369	ENST00000476840		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
intron-intron	ENST00000406369	ENST00000542850		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
intron-intron	ENST00000406369	ENST00000377982		TCGA	RV	PRAD	TCGA-EJ-7312-01B	SLC30A6	chr2	32399216	+	ACTR2	chr2	65492177	+
5CDS-intron	ENST00000460934	ENST00000300134		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000538913		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000543873		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000556155		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000537215		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000454075		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000300134		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000538913		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000543873		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000556155		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000537215		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000454075		TCGA	RV	PRAD	TCGA-CH-5752-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000300134		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000538913		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000543873		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000556155		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000537215		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000454075		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000300134		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000538913		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000543873		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000556155		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000537215		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000454075		TCGA	RV	PRAD	TCGA-HC-8258-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000541742	ENST00000366481		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SMYD3	chr1	246490503	-	TRIM58	chr1	248023919	+
In-frame	ENST00000490107	ENST00000366481		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SMYD3	chr1	246490503	-	TRIM58	chr1	248023919	+
In-frame	ENST00000388985	ENST00000366481		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SMYD3	chr1	246490503	-	TRIM58	chr1	248023919	+
intron-3CDS	ENST00000366517	ENST00000366481		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SMYD3	chr1	246490503	-	TRIM58	chr1	248023919	+
In-frame	ENST00000403792	ENST00000366481		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SMYD3	chr1	246490503	-	TRIM58	chr1	248023919	+
Frame-shit	ENST00000374232	ENST00000374855		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115626679	+	ALDOB	chr9	104184186	-
5CDS-intron	ENST00000374232	ENST00000468981		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115626679	+	ALDOB	chr9	104184186	-
3UTR-3CDS	ENST00000604751	ENST00000374855		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115626679	+	ALDOB	chr9	104184186	-
3UTR-intron	ENST00000604751	ENST00000468981		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115626679	+	ALDOB	chr9	104184186	-
Frame-shit	ENST00000293328	ENST00000545834		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	STAT5B	chr17	40362189	-	PFAS	chr17	8166238	+
Frame-shit	ENST00000293328	ENST00000314666		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	STAT5B	chr17	40362189	-	PFAS	chr17	8166238	+
5CDS-3UTR	ENST00000293328	ENST00000585319		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	STAT5B	chr17	40362189	-	PFAS	chr17	8166238	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5764-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6362-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
Frame-shit	ENST00000368761	ENST00000369939		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5CDS-intron	ENST00000368761	ENST00000529753		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5CDS-intron	ENST00000368761	ENST00000369938		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
Frame-shit	ENST00000359831	ENST00000369939		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5CDS-intron	ENST00000359831	ENST00000529753		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5CDS-intron	ENST00000359831	ENST00000369938		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5UTR-3CDS	ENST00000392556	ENST00000369939		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5UTR-intron	ENST00000392556	ENST00000529753		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5UTR-intron	ENST00000392556	ENST00000369938		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
Frame-shit	ENST00000340026	ENST00000369939		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5CDS-intron	ENST00000340026	ENST00000529753		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5CDS-intron	ENST00000340026	ENST00000369938		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
intron-3CDS	ENST00000368731	ENST00000369939		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
intron-intron	ENST00000368731	ENST00000529753		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
intron-intron	ENST00000368731	ENST00000369938		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
intron-3CDS	ENST00000368735	ENST00000369939		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
intron-intron	ENST00000368735	ENST00000529753		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
intron-intron	ENST00000368735	ENST00000369938		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TRAF3IP2	chr6	111896846	-	KIAA1324	chr1	109727667	+
5UTR-3CDS	ENST00000477524	ENST00000370673		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5UTR-3CDS	ENST00000477524	ENST00000370671		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5UTR-3CDS	ENST00000477524	ENST00000394834		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5UTR-3CDS	ENST00000477524	ENST00000370669		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5UTR-3CDS	ENST00000477524	ENST00000370668		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5UTR-3CDS	ENST00000477524	ENST00000370670		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5UTR-intron	ENST00000477524	ENST00000370667		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
In-frame	ENST00000260505	ENST00000370673		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
In-frame	ENST00000260505	ENST00000370671		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
In-frame	ENST00000260505	ENST00000394834		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
In-frame	ENST00000260505	ENST00000370669		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
In-frame	ENST00000260505	ENST00000370668		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
In-frame	ENST00000260505	ENST00000370670		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
5CDS-intron	ENST00000260505	ENST00000370667		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TTLL7	chr1	84369762	-	SAMD13	chr1	84791320	+
Frame-shit	ENST00000252936	ENST00000252108		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
Frame-shit	ENST00000252936	ENST00000431736		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
Frame-shit	ENST00000252936	ENST00000545354		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
intron-3CDS	ENST00000417178	ENST00000252108		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
intron-3CDS	ENST00000417178	ENST00000431736		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
intron-3CDS	ENST00000417178	ENST00000545354		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
In-frame	ENST00000368563	ENST00000252108		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
In-frame	ENST00000368563	ENST00000431736		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
In-frame	ENST00000368563	ENST00000545354		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
intron-3CDS	ENST00000368562	ENST00000252108		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
intron-3CDS	ENST00000368562	ENST00000431736		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
intron-3CDS	ENST00000368562	ENST00000545354		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
Frame-shit	ENST00000543663	ENST00000252108		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
Frame-shit	ENST00000543663	ENST00000431736		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
Frame-shit	ENST00000543663	ENST00000545354		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
5UTR-3CDS	ENST00000470829	ENST00000252108		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
5UTR-3CDS	ENST00000470829	ENST00000431736		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
5UTR-3CDS	ENST00000470829	ENST00000545354		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TUBGCP2	chr10	135116296	-	UBE4A	chr11	118261372	+
5CDS-5UTR	ENST00000539054	ENST00000379933		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000539054	ENST00000379938		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000539054	ENST00000334984		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000539054	ENST00000349384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000379757	ENST00000379933		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000379757	ENST00000379938		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000379757	ENST00000334984		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000379757	ENST00000349384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000473453	ENST00000379933		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000473453	ENST00000379938		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000473453	ENST00000334984		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
5CDS-5UTR	ENST00000473453	ENST00000349384		TCGA	RV	PRAD	TCGA-EJ-7782-01A	TXNDC5	chr6	7895339	-	RREB1	chr6	7176888	+
In-frame	ENST00000359626	ENST00000333538		TCGA	RV	PRAD	TCGA-CH-5750-01A	TYW1	chr7	66582605	+	WBSCR17	chr7	71142196	+
5CDS-3UTR	ENST00000359626	ENST00000498380		TCGA	RV	PRAD	TCGA-CH-5750-01A	TYW1	chr7	66582605	+	WBSCR17	chr7	71142196	+
intron-3CDS	ENST00000491969	ENST00000333538		TCGA	RV	PRAD	TCGA-CH-5750-01A	TYW1	chr7	66582605	+	WBSCR17	chr7	71142196	+
intron-3UTR	ENST00000491969	ENST00000498380		TCGA	RV	PRAD	TCGA-CH-5750-01A	TYW1	chr7	66582605	+	WBSCR17	chr7	71142196	+
5CDS-intron	ENST00000367545	ENST00000429150		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-5UTR	ENST00000367545	ENST00000416623		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000392309		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000392307		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000437412		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-5UTR	ENST00000367545	ENST00000444202		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-5UTR	ENST00000367545	ENST00000493898		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000360537		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000354765		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000367572		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-intron	ENST00000367545	ENST00000367571		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000429150		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-5UTR	ENST00000367526	ENST00000416623		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000392309		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000392307		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000437412		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-5UTR	ENST00000367526	ENST00000444202		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-5UTR	ENST00000367526	ENST00000493898		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000360537		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000354765		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000367572		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000367526	ENST00000367571		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000429150		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-5UTR	ENST00000480333	ENST00000416623		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000392309		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000392307		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000437412		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-5UTR	ENST00000480333	ENST00000444202		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-5UTR	ENST00000480333	ENST00000493898		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000360537		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000354765		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000367572		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
intron-intron	ENST00000480333	ENST00000367571		TCGA	RV	PRAD	TCGA-CH-5741-01A	UTRN	chr6	144864006	+	PLAGL1	chr6	144306311	-
5CDS-5UTR	ENST00000358372	ENST00000340600		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000358372	ENST00000549206		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000358372	ENST00000536696		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000358372	ENST00000549122		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000358372	ENST00000548537		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000358372	ENST00000551556		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000337387	ENST00000340600		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000337387	ENST00000549206		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000337387	ENST00000536696		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000337387	ENST00000549122		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000337387	ENST00000548537		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000337387	ENST00000551556		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000494513	ENST00000340600		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000494513	ENST00000549206		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000494513	ENST00000536696		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000494513	ENST00000549122		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000494513	ENST00000548537		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000494513	ENST00000551556		TCGA	RV	PRAD	TCGA-EJ-5515-01A	WTAP	chr6	160160077	+	SOCS2	chr12	93966461	+
In-frame	ENST00000337859	ENST00000339697		TCGA	RV	PRAD	TCGA-G9-6348-01A	ZC3H15	chr2	187351184	+	SERINC1	chr6	122779826	-
5UTR-3CDS	ENST00000544130	ENST00000339697		TCGA	RV	PRAD	TCGA-G9-6348-01A	ZC3H15	chr2	187351184	+	SERINC1	chr6	122779826	-
intron-3CDS	ENST00000468120	ENST00000339697		TCGA	RV	PRAD	TCGA-G9-6348-01A	ZC3H15	chr2	187351184	+	SERINC1	chr6	122779826	-
Frame-shit	ENST00000369577	ENST00000281171		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
Frame-shit	ENST00000369577	ENST00000348962		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000369577	ENST00000542557		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000369577	ENST00000544244		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000369577	ENST00000445537		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000369577	ENST00000442921		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000369577	ENST00000543886		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000369577	ENST00000544706		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
Frame-shit	ENST00000339907	ENST00000281171		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
Frame-shit	ENST00000339907	ENST00000348962		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000339907	ENST00000542557		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000339907	ENST00000544244		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000339907	ENST00000445537		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000339907	ENST00000442921		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000339907	ENST00000543886		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000339907	ENST00000544706		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
Frame-shit	ENST00000392985	ENST00000281171		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
Frame-shit	ENST00000392985	ENST00000348962		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000392985	ENST00000542557		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000392985	ENST00000544244		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000392985	ENST00000445537		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000392985	ENST00000442921		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000392985	ENST00000543886		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
5CDS-intron	ENST00000392985	ENST00000544706		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-3CDS	ENST00000369578	ENST00000281171		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-3CDS	ENST00000369578	ENST00000348962		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-intron	ENST00000369578	ENST00000542557		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-intron	ENST00000369578	ENST00000544244		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-intron	ENST00000369578	ENST00000445537		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-intron	ENST00000369578	ENST00000442921		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-intron	ENST00000369578	ENST00000543886		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
3UTR-intron	ENST00000369578	ENST00000544706		TCGA	RV	PRAD	TCGA-HC-7081-01A	ZNF292	chr6	87865477	+	PTPRO	chr12	15652376	+
intron-intron	ENST00000594012	ENST00000295824		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-5UTR	ENST00000594012	ENST00000344838		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000594012	ENST00000498089		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000595461	ENST00000295824		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-5UTR	ENST00000595461	ENST00000344838		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000595461	ENST00000498089		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000598381	ENST00000295824		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-5UTR	ENST00000598381	ENST00000344838		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000598381	ENST00000498089		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000598288	ENST00000295824		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-5UTR	ENST00000598288	ENST00000344838		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000598288	ENST00000498089		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
5CDS-intron	ENST00000354959	ENST00000295824		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
5CDS-5UTR	ENST00000354959	ENST00000344838		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
5CDS-intron	ENST00000354959	ENST00000498089		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000599414	ENST00000295824		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-5UTR	ENST00000599414	ENST00000344838		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
intron-intron	ENST00000599414	ENST00000498089		TCGA	RV	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22018838	-	EFHB	chr3	19977826	-
Frame-shit	ENST00000429654	ENST00000396219		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
Frame-shit	ENST00000429654	ENST00000352665		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-intron	ENST00000429654	ENST00000576499		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-intron	ENST00000429654	ENST00000299764		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-intron	ENST00000429654	ENST00000576714		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
Frame-shit	ENST00000340180	ENST00000396219		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
Frame-shit	ENST00000340180	ENST00000352665		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-intron	ENST00000340180	ENST00000576499		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-intron	ENST00000340180	ENST00000299764		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-intron	ENST00000340180	ENST00000576714		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	ZNF69	chr19	11998801	+	WDR16	chr17	9531989	+
5CDS-3UTR	ENST00000395146	ENST00000295462		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000395146	ENST00000512733		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000395146	ENST00000515541		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000395146	ENST00000380645		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-3UTR	ENST00000307808	ENST00000295462		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000307808	ENST00000512733		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000307808	ENST00000515541		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000307808	ENST00000380645		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-3UTR	ENST00000544085	ENST00000295462		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000544085	ENST00000512733		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000544085	ENST00000515541		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
5CDS-intron	ENST00000544085	ENST00000380645		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
intron-3UTR	ENST00000511996	ENST00000295462		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
intron-intron	ENST00000511996	ENST00000512733		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
intron-intron	ENST00000511996	ENST00000515541		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
intron-intron	ENST00000511996	ENST00000380645		TCGA	RV	PRAD	TCGA-CH-5763-01A	AFF1	chr4	88016121	+	PAQR3	chr4	79808463	-
Frame-shit	ENST00000336665	ENST00000366691		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
5CDS-intron	ENST00000336665	ENST00000493528		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
Frame-shit	ENST00000304032	ENST00000366691		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
5CDS-intron	ENST00000304032	ENST00000493528		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
intron-3CDS	ENST00000409538	ENST00000366691		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
intron-intron	ENST00000409538	ENST00000493528		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
intron-3CDS	ENST00000428334	ENST00000366691		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
intron-intron	ENST00000428334	ENST00000493528		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
Frame-shit	ENST00000409457	ENST00000366691		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
5CDS-intron	ENST00000409457	ENST00000493528		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	AGAP1	chr2	236403493	+	RHOU	chr1	228879032	+
Frame-shit	ENST00000336665	ENST00000444636		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000336665	ENST00000415673		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000336665	ENST00000396563		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000336665	ENST00000243810		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
5CDS-intron	ENST00000336665	ENST00000458341		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000304032	ENST00000444636		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000304032	ENST00000415673		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000304032	ENST00000396563		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000304032	ENST00000243810		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
5CDS-intron	ENST00000304032	ENST00000458341		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000409538	ENST00000444636		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000409538	ENST00000415673		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000409538	ENST00000396563		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000409538	ENST00000243810		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-intron	ENST00000409538	ENST00000458341		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000428334	ENST00000444636		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000428334	ENST00000415673		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000428334	ENST00000396563		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-3CDS	ENST00000428334	ENST00000243810		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
intron-intron	ENST00000428334	ENST00000458341		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000409457	ENST00000444636		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000409457	ENST00000415673		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000409457	ENST00000396563		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000409457	ENST00000243810		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
5CDS-intron	ENST00000409457	ENST00000458341		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	AGAP1	chr2	236403493	+	SP140L	chr2	231261472	+
Frame-shit	ENST00000371839	ENST00000396153		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371839	ENST00000371778		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371839	ENST00000545823		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
5CDS-intron	ENST00000371839	ENST00000472808		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371838	ENST00000396153		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371838	ENST00000371778		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371838	ENST00000545823		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
5CDS-intron	ENST00000371838	ENST00000472808		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371836	ENST00000396153		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371836	ENST00000371778		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000371836	ENST00000545823		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
5CDS-intron	ENST00000371836	ENST00000472808		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-3CDS	ENST00000334103	ENST00000396153		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-3CDS	ENST00000334103	ENST00000371778		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-3CDS	ENST00000334103	ENST00000545823		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-intron	ENST00000334103	ENST00000472808		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-3CDS	ENST00000497451	ENST00000396153		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-3CDS	ENST00000497451	ENST00000371778		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-3CDS	ENST00000497451	ENST00000545823		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
intron-intron	ENST00000497451	ENST00000472808		TCGA	RV	PRAD	TCGA-V1-A8MF-01A	AGBL4	chr1	49511256	-	FAF1	chr1	50907195	-
Frame-shit	ENST00000329841	ENST00000437048		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-intron	ENST00000329841	ENST00000574029		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000329841	ENST00000576149		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000329841	ENST00000446250		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000329841	ENST00000291074		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000329841	ENST00000571805		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000329841	ENST00000401468		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
Frame-shit	ENST00000346623	ENST00000437048		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-intron	ENST00000346623	ENST00000574029		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000346623	ENST00000576149		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000346623	ENST00000446250		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000346623	ENST00000291074		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000346623	ENST00000571805		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5CDS-5UTR	ENST00000346623	ENST00000401468		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-3CDS	ENST00000557963	ENST00000437048		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-intron	ENST00000557963	ENST00000574029		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000557963	ENST00000576149		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000557963	ENST00000446250		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000557963	ENST00000291074		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000557963	ENST00000571805		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000557963	ENST00000401468		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-3CDS	ENST00000560555	ENST00000437048		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-intron	ENST00000560555	ENST00000574029		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000560555	ENST00000576149		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000560555	ENST00000446250		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000560555	ENST00000291074		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000560555	ENST00000571805		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
intron-5UTR	ENST00000560555	ENST00000401468		TCGA	RV	PRAD	TCGA-HC-7744-01A	ALDH1A3	chr15	101456831	+	VPS53	chr17	505136	-
5UTR-3UTR	ENST00000265742	ENST00000380050		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
5UTR-3UTR	ENST00000265742	ENST00000265741		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
5UTR-3UTR	ENST00000265742	ENST00000406263		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
5UTR-3UTR	ENST00000265742	ENST00000436577		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
5UTR-intron	ENST00000265742	ENST00000496279		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000486698	ENST00000380050		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000486698	ENST00000265741		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000486698	ENST00000406263		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000486698	ENST00000436577		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
intron-intron	ENST00000486698	ENST00000496279		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	ANKIB1	chr7	91875833	+	CDK14	chr7	90836480	+
intron-intron	ENST00000262097	ENST00000354185		TCGA	RV	PRAD	TCGA-HC-7210-01A	ASAH1	chr8	17913961	-	DDX21	chr10	70723858	+
intron-intron	ENST00000381733	ENST00000354185		TCGA	RV	PRAD	TCGA-HC-7210-01A	ASAH1	chr8	17913961	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000417108	ENST00000354185		TCGA	RV	PRAD	TCGA-HC-7210-01A	ASAH1	chr8	17913961	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000520781	ENST00000354185		TCGA	RV	PRAD	TCGA-HC-7210-01A	ASAH1	chr8	17913961	-	DDX21	chr10	70723858	+
intron-intron	ENST00000314146	ENST00000354185		TCGA	RV	PRAD	TCGA-HC-7210-01A	ASAH1	chr8	17913961	-	DDX21	chr10	70723858	+
intron-intron	ENST00000520051	ENST00000354185		TCGA	RV	PRAD	TCGA-HC-7210-01A	ASAH1	chr8	17913961	-	DDX21	chr10	70723858	+
In-frame	ENST00000283558	ENST00000444610		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000283558	ENST00000218981		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000283558	ENST00000280056		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
5CDS-5UTR	ENST00000283558	ENST00000490949		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000375630	ENST00000444610		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000375630	ENST00000218981		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000375630	ENST00000280056		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
5CDS-5UTR	ENST00000375630	ENST00000490949		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000487903	ENST00000444610		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000487903	ENST00000218981		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000487903	ENST00000280056		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
5CDS-5UTR	ENST00000487903	ENST00000490949		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000375645	ENST00000444610		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000375645	ENST00000218981		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
In-frame	ENST00000375645	ENST00000280056		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
5CDS-5UTR	ENST00000375645	ENST00000490949		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000419448	ENST00000444610		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000419448	ENST00000218981		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000419448	ENST00000280056		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
intron-5UTR	ENST00000419448	ENST00000490949		TCGA	RV	PRAD	TCGA-YL-A8SQ-01B	ATP11A	chr13	113516889	+	DHRS12	chr13	52365393	-
intron-3CDS	ENST00000535539	ENST00000531120		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000535539	ENST00000524896		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-intron	ENST00000535539	ENST00000532054		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
In-frame	ENST00000378438	ENST00000531120		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
In-frame	ENST00000378438	ENST00000524896		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
5CDS-intron	ENST00000378438	ENST00000532054		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000544975	ENST00000531120		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000544975	ENST00000524896		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-intron	ENST00000544975	ENST00000532054		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000486558	ENST00000531120		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000486558	ENST00000524896		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-intron	ENST00000486558	ENST00000532054		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000535777	ENST00000531120		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-3CDS	ENST00000535777	ENST00000524896		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
intron-intron	ENST00000535777	ENST00000532054		TCGA	RV	PRAD	TCGA-G9-6348-01A	ATP6AP2	chrX	40465889	+	EIF3M	chr11	32611132	+
5CDS-5UTR	ENST00000284509	ENST00000353809		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
5CDS-5UTR	ENST00000284509	ENST00000354638		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
5CDS-5UTR	ENST00000284509	ENST00000382996		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
5CDS-5UTR	ENST00000559829	ENST00000353809		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
5CDS-5UTR	ENST00000559829	ENST00000354638		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
5CDS-5UTR	ENST00000559829	ENST00000382996		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
intron-5UTR	ENST00000558959	ENST00000353809		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
intron-5UTR	ENST00000558959	ENST00000354638		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
intron-5UTR	ENST00000558959	ENST00000382996		TCGA	RV	PRAD	TCGA-EJ-7330-01A	ATP8B4	chr15	50168475	-	OCA2	chr15	28327041	-
5CDS-intron	ENST00000339594	ENST00000275569		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	POMZP3	chr7	76241130	-
5CDS-intron	ENST00000339594	ENST00000310842		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	POMZP3	chr7	76241130	-
5CDS-intron	ENST00000404251	ENST00000275569		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	POMZP3	chr7	76241130	-
5CDS-intron	ENST00000404251	ENST00000310842		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	POMZP3	chr7	76241130	-
5CDS-3UTR	ENST00000441864	ENST00000596435		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-intron	ENST00000441864	ENST00000344019		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000441864	ENST00000597551		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000441864	ENST00000204637		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000441864	ENST00000600429		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000441864	ENST00000594009		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-intron	ENST00000441864	ENST00000595510		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000246785	ENST00000596435		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-intron	ENST00000246785	ENST00000344019		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000246785	ENST00000597551		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000246785	ENST00000204637		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000246785	ENST00000600429		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000246785	ENST00000594009		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
5CDS-intron	ENST00000246785	ENST00000595510		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-3UTR	ENST00000246784	ENST00000596435		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-intron	ENST00000246784	ENST00000344019		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-3UTR	ENST00000246784	ENST00000597551		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-3UTR	ENST00000246784	ENST00000204637		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-3UTR	ENST00000246784	ENST00000600429		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-3UTR	ENST00000246784	ENST00000594009		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
3UTR-intron	ENST00000246784	ENST00000595510		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000594793	ENST00000596435		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-intron	ENST00000594793	ENST00000344019		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000594793	ENST00000597551		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000594793	ENST00000204637		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000594793	ENST00000600429		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000594793	ENST00000594009		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
intron-intron	ENST00000594793	ENST00000595510		TCGA	RV	PRAD	TCGA-ZG-A9LN-01A	BCL2L12	chr19	50173745	+	FLT3LG	chr19	49989272	+
Frame-shit	ENST00000374518	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	BMS1	chr10	43297666	+	PHYHIPL	chr10	60996243	+
5CDS-intron	ENST00000374518	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	BMS1	chr10	43297666	+	PHYHIPL	chr10	60996243	+
5CDS-intron	ENST00000374518	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	BMS1	chr10	43297666	+	PHYHIPL	chr10	60996243	+
5CDS-intron	ENST00000374518	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	BMS1	chr10	43297666	+	PHYHIPL	chr10	60996243	+
Frame-shit	ENST00000335762	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000335762	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000335762	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000335762	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399655	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399655	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399655	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399655	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000480911	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000480911	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000480911	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000480911	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399644	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399644	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399644	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399644	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000344100	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000344100	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000344100	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000344100	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399638	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399638	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399638	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399638	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399629	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399629	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399629	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399629	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399597	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399597	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399597	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399597	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000327702	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000327702	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000327702	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000327702	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399621	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399621	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399621	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399621	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399649	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399649	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399649	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399649	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399637	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399637	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399637	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399637	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000402845	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000402845	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000402845	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000402845	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399591	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399591	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399591	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399591	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399641	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399641	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399641	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399641	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000347598	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000347598	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000347598	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000347598	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399606	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399606	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399606	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399606	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399595	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399595	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399595	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399595	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399601	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399601	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399601	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399601	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399603	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399603	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399603	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399603	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399634	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399634	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399634	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399634	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000399617	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000399617	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399617	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000399617	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
Frame-shit	ENST00000406454	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
In-frame	ENST00000406454	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000406454	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000406454	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
intron-3CDS	ENST00000491104	ENST00000238146		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
intron-3CDS	ENST00000491104	ENST00000538744		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
intron-intron	ENST00000491104	ENST00000541259		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
intron-intron	ENST00000491104	ENST00000421670		TCGA	RV	PRAD	TCGA-CH-5766-01A	CACNA1C	chr12	2711126	+	DDX55	chr12	124104511	+
5CDS-intron	ENST00000392474	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000392474	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000392474	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000392474	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000392474	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000538733	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000538733	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000538733	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000538733	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000538733	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000337174	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000337174	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000337174	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000337174	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000337174	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000347034	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000347034	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000347034	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000347034	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000347034	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000324774	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000324774	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000324774	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000324774	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000324774	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000545538	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000545538	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000545538	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000545538	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000545538	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000412367	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000412367	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000412367	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000412367	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000412367	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000412367	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000404169	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000404169	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000404169	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000404169	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000404169	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000404169	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000402834	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000402834	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000402834	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000402834	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000402834	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000402834	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000446440	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000446440	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000446440	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000446440	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000446440	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000446440	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000392473	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000392473	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000392473	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000392473	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000392473	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000392473	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000535524	ENST00000377069		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000535524	ENST00000542973		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000535524	ENST00000377071		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000535524	ENST00000536437		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000535524	ENST00000538046		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	RV	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121675497	-	KDM2B	chr12	121954666	-
intron-3CDS	ENST00000392347	ENST00000571995		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000392347	ENST00000571880		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000392347	ENST00000269347		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000392347	ENST00000538809		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000389641	ENST00000571995		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000389641	ENST00000571880		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000389641	ENST00000269347		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000389641	ENST00000538809		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
Frame-shit	ENST00000392346	ENST00000571995		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000392346	ENST00000571880		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392346	ENST00000269347		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392346	ENST00000538809		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000327026	ENST00000571995		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000327026	ENST00000571880		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000327026	ENST00000269347		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000327026	ENST00000538809		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000392343	ENST00000571995		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000392343	ENST00000571880		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000392343	ENST00000269347		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000392343	ENST00000538809		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CCDC57	chr17	80109436	-	RAB40B	chr17	80622432	-
Frame-shit	ENST00000430710	ENST00000337619		TCGA	RV	PRAD	TCGA-HC-7077-01A	CHD8	chr14	21878010	-	AP1S1	chr7	100803800	+
In-frame	ENST00000399982	ENST00000337619		TCGA	RV	PRAD	TCGA-HC-7077-01A	CHD8	chr14	21878010	-	AP1S1	chr7	100803800	+
Frame-shit	ENST00000557364	ENST00000337619		TCGA	RV	PRAD	TCGA-HC-7077-01A	CHD8	chr14	21878010	-	AP1S1	chr7	100803800	+
intron-3CDS	ENST00000555962	ENST00000337619		TCGA	RV	PRAD	TCGA-HC-7077-01A	CHD8	chr14	21878010	-	AP1S1	chr7	100803800	+
In-frame	ENST00000251166	ENST00000409790		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
In-frame	ENST00000251166	ENST00000409552		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000251166	ENST00000465491		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000251166	ENST00000381822		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-3CDS	ENST00000539968	ENST00000409790		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-3CDS	ENST00000539968	ENST00000409552		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-intron	ENST00000539968	ENST00000465491		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-intron	ENST00000539968	ENST00000381822		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
In-frame	ENST00000537233	ENST00000409790		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
In-frame	ENST00000537233	ENST00000409552		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000537233	ENST00000465491		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000537233	ENST00000381822		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
In-frame	ENST00000574025	ENST00000409790		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
In-frame	ENST00000574025	ENST00000409552		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000574025	ENST00000465491		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000574025	ENST00000381822		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
intron-3CDS	ENST00000423908	ENST00000409790		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
intron-3CDS	ENST00000423908	ENST00000409552		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
intron-intron	ENST00000423908	ENST00000465491		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
intron-intron	ENST00000423908	ENST00000381822		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-3CDS	ENST00000577144	ENST00000409790		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-3CDS	ENST00000577144	ENST00000409552		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-intron	ENST00000577144	ENST00000465491		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
5UTR-intron	ENST00000577144	ENST00000381822		TCGA	RV	PRAD	TCGA-EJ-5524-01A	CORO7	chr16	4462357	-	CLEC16A	chr16	11114050	+
intron-3CDS	ENST00000355078	ENST00000262428		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-5UTR	ENST00000355078	ENST00000567278		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-5UTR	ENST00000355078	ENST00000564057		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
In-frame	ENST00000302763	ENST00000262428		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
5CDS-5UTR	ENST00000302763	ENST00000567278		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
5CDS-5UTR	ENST00000302763	ENST00000564057		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
In-frame	ENST00000518825	ENST00000262428		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
5CDS-5UTR	ENST00000518825	ENST00000567278		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
5CDS-5UTR	ENST00000518825	ENST00000564057		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-3CDS	ENST00000520400	ENST00000262428		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-5UTR	ENST00000520400	ENST00000567278		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-5UTR	ENST00000520400	ENST00000564057		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-3CDS	ENST00000540387	ENST00000262428		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-5UTR	ENST00000540387	ENST00000567278		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
intron-5UTR	ENST00000540387	ENST00000564057		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CTNNA1	chr5	138119061	+	COTL1	chr16	84600561	-
Frame-shit	ENST00000284878	ENST00000443617		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	CXADR	chr21	18937929	+	HERC1	chr15	63908881	-
Frame-shit	ENST00000400166	ENST00000443617		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	CXADR	chr21	18937929	+	HERC1	chr15	63908881	-
intron-3CDS	ENST00000356275	ENST00000443617		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	CXADR	chr21	18937929	+	HERC1	chr15	63908881	-
Frame-shit	ENST00000400165	ENST00000443617		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	CXADR	chr21	18937929	+	HERC1	chr15	63908881	-
Frame-shit	ENST00000306618	ENST00000443617		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	CXADR	chr21	18937929	+	HERC1	chr15	63908881	-
Frame-shit	ENST00000400169	ENST00000443617		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	CXADR	chr21	18937929	+	HERC1	chr15	63908881	-
In-frame	ENST00000377452	ENST00000354981		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
5CDS-5UTR	ENST00000377452	ENST00000378003		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
5CDS-5UTR	ENST00000377452	ENST00000355755		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
5CDS-5UTR	ENST00000377452	ENST00000408042		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
3UTR-3CDS	ENST00000494921	ENST00000354981		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
3UTR-5UTR	ENST00000494921	ENST00000378003		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
3UTR-5UTR	ENST00000494921	ENST00000355755		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
3UTR-5UTR	ENST00000494921	ENST00000408042		TCGA	RV	PRAD	TCGA-EJ-8469-01A	DTD1	chr20	18608877	+	KIF16B	chr20	16496309	-
Frame-shit	ENST00000320631	ENST00000301887		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
5CDS-intron	ENST00000320631	ENST00000435842		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
5CDS-intron	ENST00000320631	ENST00000527716		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
In-frame	ENST00000359393	ENST00000301887		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
5CDS-intron	ENST00000359393	ENST00000435842		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
5CDS-intron	ENST00000359393	ENST00000527716		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
intron-3CDS	ENST00000488711	ENST00000301887		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
intron-intron	ENST00000488711	ENST00000435842		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
intron-intron	ENST00000488711	ENST00000527716		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	EHD1	chr11	64641893	-	BATF2	chr11	64762021	-
5CDS-5UTR	ENST00000357992	ENST00000243644		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ELK4	chr1	205588085	-	ZNF350	chr19	52477784	-
5CDS-5UTR	ENST00000357992	ENST00000600703		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ELK4	chr1	205588085	-	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000289703	ENST00000243644		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ELK4	chr1	205588085	-	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000289703	ENST00000600703		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ELK4	chr1	205588085	-	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000468523	ENST00000243644		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ELK4	chr1	205588085	-	ZNF350	chr19	52477784	-
intron-5UTR	ENST00000468523	ENST00000600703		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ELK4	chr1	205588085	-	ZNF350	chr19	52477784	-
5CDS-intron	ENST00000373314	ENST00000466411		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000373314	ENST00000435050		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000373314	ENST00000431918		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000373314	ENST00000340958		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-intron	ENST00000373312	ENST00000466411		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000373312	ENST00000435050		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000373312	ENST00000431918		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-5UTR	ENST00000373312	ENST00000340958		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
intron-intron	ENST00000468379	ENST00000466411		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000468379	ENST00000435050		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000468379	ENST00000431918		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
intron-5UTR	ENST00000468379	ENST00000340958		TCGA	RV	PRAD	TCGA-HC-8265-01A	FAM129B	chr9	130267622	-	CLDN4	chr7	73245193	+
5CDS-intron	ENST00000324331	ENST00000479389		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-5UTR	ENST00000324331	ENST00000259808		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-intron	ENST00000324331	ENST00000541791		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-intron	ENST00000324331	ENST00000380409		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-intron	ENST00000274680	ENST00000479389		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-5UTR	ENST00000274680	ENST00000259808		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-intron	ENST00000274680	ENST00000541791		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
5CDS-intron	ENST00000274680	ENST00000380409		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FARS2	chr6	5545573	+	RIPK1	chr6	3076998	+
intron-3CDS	ENST00000397269	ENST00000358621		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-3CDS	ENST00000397269	ENST00000357447		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-3CDS	ENST00000397269	ENST00000378503		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000397269	ENST00000342409		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000397269	ENST00000493380		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000397269	ENST00000475141		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000397269	ENST00000492155		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
In-frame	ENST00000362091	ENST00000358621		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
In-frame	ENST00000362091	ENST00000357447		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
In-frame	ENST00000362091	ENST00000378503		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
5CDS-intron	ENST00000362091	ENST00000342409		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
5CDS-intron	ENST00000362091	ENST00000493380		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
5CDS-intron	ENST00000362091	ENST00000475141		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
5CDS-intron	ENST00000362091	ENST00000492155		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-3CDS	ENST00000470089	ENST00000358621		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-3CDS	ENST00000470089	ENST00000357447		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-3CDS	ENST00000470089	ENST00000378503		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-intron	ENST00000470089	ENST00000342409		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-intron	ENST00000470089	ENST00000493380		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-intron	ENST00000470089	ENST00000475141		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
3UTR-intron	ENST00000470089	ENST00000492155		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-3CDS	ENST00000379999	ENST00000358621		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-3CDS	ENST00000379999	ENST00000357447		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-3CDS	ENST00000379999	ENST00000378503		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000379999	ENST00000342409		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000379999	ENST00000493380		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000379999	ENST00000475141		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
intron-intron	ENST00000379999	ENST00000492155		TCGA	RV	PRAD	TCGA-J4-A83M-01A	FBXO18	chr10	5932309	+	FRMD4A	chr10	13717044	-
5CDS-5UTR	ENST00000264433	ENST00000370155		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000264433	ENST00000465289		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000264433	ENST00000427993		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000264433	ENST00000370153		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-intron	ENST00000264433	ENST00000370156		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000379346	ENST00000370155		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000379346	ENST00000465289		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000379346	ENST00000427993		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-5UTR	ENST00000379346	ENST00000370153		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
5CDS-intron	ENST00000379346	ENST00000370156		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
intron-5UTR	ENST00000505445	ENST00000370155		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
intron-5UTR	ENST00000505445	ENST00000465289		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
intron-5UTR	ENST00000505445	ENST00000427993		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
intron-5UTR	ENST00000505445	ENST00000370153		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
intron-intron	ENST00000505445	ENST00000370156		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	FNIP2	chr4	159817017	+	SLC35A3	chr1	100459093	+
In-frame	ENST00000324589	ENST00000342183		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000401710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000404971		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000406316		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000405472		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000401669		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000406859		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000324589	ENST00000402717		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5CDS-intron	ENST00000324589	ENST00000331040		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5CDS-intron	ENST00000324589	ENST00000405581		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000342183		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000401710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000404971		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000406316		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000405472		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000401669		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000406859		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000349752	ENST00000402717		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5CDS-intron	ENST00000349752	ENST00000331040		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5CDS-intron	ENST00000349752	ENST00000405581		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000342183		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000401710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000404971		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000406316		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000405472		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000401669		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000406859		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000406653	ENST00000402717		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-intron	ENST00000406653	ENST00000331040		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-intron	ENST00000406653	ENST00000405581		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000342183		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000401710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000404971		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000406316		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000405472		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000401669		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000406859		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
In-frame	ENST00000356174	ENST00000402717		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5CDS-intron	ENST00000356174	ENST00000331040		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5CDS-intron	ENST00000356174	ENST00000405581		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000342183		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000401710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000404971		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000406316		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000405472		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000401669		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000406859		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-3CDS	ENST00000420311	ENST00000402717		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-intron	ENST00000420311	ENST00000331040		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-intron	ENST00000420311	ENST00000405581		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000342183		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000401710		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000404971		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000406316		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000405472		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000401669		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000406859		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-3CDS	ENST00000486564	ENST00000402717		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-intron	ENST00000486564	ENST00000331040		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
intron-intron	ENST00000486564	ENST00000405581		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	GALNT14	chr2	31360824	-	NRXN1	chr2	50170929	-
5UTR-intron	ENST00000392701	ENST00000489714		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	GALNT3	chr2	166650525	-	TTC21B	chr2	166758420	-
5UTR-intron	ENST00000392701	ENST00000536175		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	GALNT3	chr2	166650525	-	TTC21B	chr2	166758420	-
5UTR-intron	ENST00000392701	ENST00000243344		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	GALNT3	chr2	166650525	-	TTC21B	chr2	166758420	-
intron-intron	ENST00000409882	ENST00000489714		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	GALNT3	chr2	166650525	-	TTC21B	chr2	166758420	-
intron-intron	ENST00000409882	ENST00000536175		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	GALNT3	chr2	166650525	-	TTC21B	chr2	166758420	-
intron-intron	ENST00000409882	ENST00000243344		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	GALNT3	chr2	166650525	-	TTC21B	chr2	166758420	-
Frame-shit	ENST00000258886	ENST00000299601		TCGA	RV	PRAD	TCGA-EJ-7783-01A	IREB2	chr15	78781113	+	LEO1	chr15	52258701	-
Frame-shit	ENST00000258886	ENST00000315141		TCGA	RV	PRAD	TCGA-EJ-7783-01A	IREB2	chr15	78781113	+	LEO1	chr15	52258701	-
intron-3CDS	ENST00000560440	ENST00000299601		TCGA	RV	PRAD	TCGA-EJ-7783-01A	IREB2	chr15	78781113	+	LEO1	chr15	52258701	-
intron-3CDS	ENST00000560440	ENST00000315141		TCGA	RV	PRAD	TCGA-EJ-7783-01A	IREB2	chr15	78781113	+	LEO1	chr15	52258701	-
intron-3CDS	ENST00000559427	ENST00000299601		TCGA	RV	PRAD	TCGA-EJ-7783-01A	IREB2	chr15	78781113	+	LEO1	chr15	52258701	-
intron-3CDS	ENST00000559427	ENST00000315141		TCGA	RV	PRAD	TCGA-EJ-7783-01A	IREB2	chr15	78781113	+	LEO1	chr15	52258701	-
Frame-shit	ENST00000373731	ENST00000229812		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	KCTD20	chr6	36438034	+	STK38	chr6	36493419	-
intron-3CDS	ENST00000474988	ENST00000229812		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	KCTD20	chr6	36438034	+	STK38	chr6	36493419	-
5UTR-3CDS	ENST00000544295	ENST00000229812		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	KCTD20	chr6	36438034	+	STK38	chr6	36493419	-
Frame-shit	ENST00000449081	ENST00000229812		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	KCTD20	chr6	36438034	+	STK38	chr6	36493419	-
5UTR-3CDS	ENST00000536244	ENST00000229812		TCGA	RV	PRAD	TCGA-V1-A8MG-01A	KCTD20	chr6	36438034	+	STK38	chr6	36493419	-
5CDS-5UTR	ENST00000378814	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000259711	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000378843	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000378826	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000378816	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
5CDS-5UTR	ENST00000502704	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
intron-5UTR	ENST00000503342	ENST00000309983		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	KIF13A	chr6	17987285	-	TPMT	chr6	18149402	-
5UTR-3CDS	ENST00000540664	ENST00000423344		TCGA	RV	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	C10orf131	chr10	97681773	+
5UTR-3CDS	ENST00000371103	ENST00000423344		TCGA	RV	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	C10orf131	chr10	97681773	+
5UTR-3CDS	ENST00000356016	ENST00000423344		TCGA	RV	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	C10orf131	chr10	97681773	+
5UTR-3CDS	ENST00000371097	ENST00000423344		TCGA	RV	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	C10orf131	chr10	97681773	+
intron-3CDS	ENST00000498444	ENST00000423344		TCGA	RV	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	C10orf131	chr10	97681773	+
5CDS-5UTR	ENST00000344191	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000344191	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000344191	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000344191	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000344191	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000351017	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000351017	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000351017	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000351017	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000351017	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392108	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392108	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392108	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000392108	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392108	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392112	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392112	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392112	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000392112	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000392112	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000366806	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000366806	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000366806	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000366806	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000366806	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000447894	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000447894	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000447894	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000447894	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000447894	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000400822	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000400822	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000400822	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-3UTR	ENST00000400822	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
5CDS-5UTR	ENST00000400822	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000507679	ENST00000375751		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000507679	ENST00000375754		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000507679	ENST00000375747		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
intron-3UTR	ENST00000507679	ENST00000476708		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
intron-5UTR	ENST00000507679	ENST00000375746		TCGA	RV	PRAD	TCGA-V1-A9OY-01A	MLLT4	chr6	168227917	+	SYK	chr9	93606140	+
In-frame	ENST00000413052	ENST00000431532		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000413052	ENST00000370574		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000369645	ENST00000431532		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000369645	ENST00000370574		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000544796	ENST00000431532		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000544796	ENST00000370574		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
5UTR-3CDS	ENST00000369644	ENST00000431532		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
5UTR-3CDS	ENST00000369644	ENST00000370574		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
3UTR-3CDS	ENST00000468624	ENST00000431532		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
3UTR-3CDS	ENST00000468624	ENST00000370574		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000357443	ENST00000431532		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
In-frame	ENST00000357443	ENST00000370574		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	MOV10	chr1	113217671	+	ZNHIT6	chr1	86146587	-
5CDS-5UTR	ENST00000582151	ENST00000574745		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000582151	ENST00000262441		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000250124	ENST00000574745		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000250124	ENST00000262441		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000396501	ENST00000574745		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000396501	ENST00000262441		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000423172	ENST00000574745		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-5UTR	ENST00000423172	ENST00000262441		TCGA	RV	PRAD	TCGA-FC-7708-01A	MPDU1	chr17	7487283	+	GLP2R	chr17	9737124	+
5CDS-intron	ENST00000323851	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000323851	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000323851	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000323851	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000323851	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000323851	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000354944	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000354944	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000354944	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000354944	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000354944	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000354944	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000521414	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000521414	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000521414	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000521414	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000521414	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000521414	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537882	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537882	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537882	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537882	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537882	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000537882	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000414097	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000414097	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000414097	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000414097	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000414097	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000414097	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518176	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518176	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518176	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518176	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518176	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518176	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000522476	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000522476	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000522476	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000522476	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000522476	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000522476	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518066	ENST00000408982		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518066	ENST00000262477		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518066	ENST00000537505		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518066	ENST00000546142		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518066	ENST00000341923		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-intron	ENST00000518066	ENST00000570487		TCGA	RV	PRAD	TCGA-HC-7077-01A	NDRG1	chr8	134249419	-	RABEP1	chr17	5283828	+
intron-3CDS	ENST00000340635	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000340635	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000360047	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000360047	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000507116	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000507116	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
Frame-shit	ENST00000502484	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
5CDS-3UTR	ENST00000502484	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
In-frame	ENST00000546160	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
5CDS-3UTR	ENST00000546160	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000502575	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000502575	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000358923	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000358923	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000503258	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000503258	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000405755	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000405755	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000317118	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000317118	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3CDS	ENST00000503947	ENST00000397977		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
intron-3UTR	ENST00000503947	ENST00000521758		TCGA	RV	PRAD	TCGA-J4-A83K-01A	PDE4D	chr5	59284315	-	INTS10	chr8	19677084	+
5CDS-intron	ENST00000431992	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000431992	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000431992	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000431992	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373422	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373422	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373422	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000373422	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000257118	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000257118	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000257118	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000257118	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000419414	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000419414	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000419414	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000419414	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373416	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373416	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373416	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000373416	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000485928	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000485928	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5UTR-intron	ENST00000485928	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5UTR-5UTR	ENST00000485928	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373418	ENST00000216281		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373418	ENST00000334701		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-intron	ENST00000373418	ENST00000441629		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
5CDS-5UTR	ENST00000373418	ENST00000558600		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	PHC2	chr1	33794471	-	HSP90AA1	chr14	102568422	-
Frame-shit	ENST00000262741	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000262741	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000262741	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000262741	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000262741	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
Frame-shit	ENST00000372006	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000372006	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000372006	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000372006	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000372006	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
In-frame	ENST00000340332	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000340332	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000340332	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000340332	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000340332	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
In-frame	ENST00000420542	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000420542	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000420542	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000420542	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000420542	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
In-frame	ENST00000354242	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000354242	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000354242	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000354242	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000354242	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
Frame-shit	ENST00000540385	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000540385	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000540385	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000540385	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000540385	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
Frame-shit	ENST00000423209	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000423209	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000423209	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000423209	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
5CDS-intron	ENST00000423209	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
intron-3CDS	ENST00000488808	ENST00000354329		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
intron-intron	ENST00000488808	ENST00000529578		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
intron-intron	ENST00000488808	ENST00000533112		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
intron-intron	ENST00000488808	ENST00000531253		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
intron-intron	ENST00000488808	ENST00000527372		TCGA	RV	PRAD	TCGA-ZG-A9M4-01A	PIK3R3	chr1	46543187	-	MYO18A	chr17	27423933	-
intron-3CDS	ENST00000356327	ENST00000353442		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000356327	ENST00000359422		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000356327	ENST00000354505		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000356327	ENST00000540390		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000356327	ENST00000430825		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000351298	ENST00000353442		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000351298	ENST00000359422		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000351298	ENST00000354505		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000351298	ENST00000540390		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000351298	ENST00000430825		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000342215	ENST00000353442		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000342215	ENST00000359422		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000342215	ENST00000354505		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000342215	ENST00000540390		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000342215	ENST00000430825		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000340989	ENST00000353442		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000340989	ENST00000359422		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000340989	ENST00000354505		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000340989	ENST00000540390		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000340989	ENST00000430825		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000497307	ENST00000353442		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000497307	ENST00000359422		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000497307	ENST00000354505		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000497307	ENST00000540390		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
intron-intron	ENST00000497307	ENST00000430825		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	PLD1	chr3	171488985	-	LMBR1	chr7	156629579	-
Frame-shit	ENST00000439268	ENST00000325321		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000439268	ENST00000391810		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000439268	ENST00000358049		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-3UTR	ENST00000439268	ENST00000597509		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
Frame-shit	ENST00000340578	ENST00000325321		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000340578	ENST00000391810		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000340578	ENST00000358049		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-3UTR	ENST00000340578	ENST00000597509		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
Frame-shit	ENST00000541471	ENST00000325321		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000541471	ENST00000391810		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000541471	ENST00000358049		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-3UTR	ENST00000541471	ENST00000597509		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
Frame-shit	ENST00000591092	ENST00000325321		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000591092	ENST00000391810		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000591092	ENST00000358049		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-3UTR	ENST00000591092	ENST00000597509		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
Frame-shit	ENST00000034275	ENST00000325321		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000034275	ENST00000391810		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-5UTR	ENST00000034275	ENST00000358049		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5CDS-3UTR	ENST00000034275	ENST00000597509		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5UTR-3CDS	ENST00000591124	ENST00000325321		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5UTR-5UTR	ENST00000591124	ENST00000391810		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5UTR-5UTR	ENST00000591124	ENST00000358049		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
5UTR-3UTR	ENST00000591124	ENST00000597509		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	RANBP3	chr19	5978072	-	KLK2	chr19	51379728	+
Frame-shit	ENST00000380158	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000380158	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000380158	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
Frame-shit	ENST00000264572	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000264572	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000264572	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
Frame-shit	ENST00000408927	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000408927	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000408927	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
intron-3CDS	ENST00000512857	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
intron-intron	ENST00000512857	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
intron-intron	ENST00000512857	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
Frame-shit	ENST00000453712	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000453712	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000453712	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
Frame-shit	ENST00000339360	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000339360	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000339360	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
Frame-shit	ENST00000408900	ENST00000319540		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000408900	ENST00000273908		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
5CDS-intron	ENST00000408900	ENST00000282709		TCGA	RV	PRAD	TCGA-HC-7212-01A	RAP1GDS1	chr4	99325753	+	SCD5	chr4	83557976	-
In-frame	ENST00000357277	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000357277	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000357277	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
5CDS-intron	ENST00000357277	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000303843	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000303843	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000303843	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
5CDS-intron	ENST00000303843	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000380064	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000380064	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
In-frame	ENST00000380064	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
5CDS-intron	ENST00000380064	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
intron-3CDS	ENST00000469714	ENST00000371121		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
intron-3CDS	ENST00000469714	ENST00000371122		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
intron-3CDS	ENST00000469714	ENST00000371123		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
intron-intron	ENST00000469714	ENST00000478420		TCGA	RV	PRAD	TCGA-HC-7232-01A	REPS2	chrX	17047746	+	SMARCA1	chrX	128615162	-
5CDS-5UTR	ENST00000337907	ENST00000589046		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000337907	ENST00000420450		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000337907	ENST00000526123		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-intron	ENST00000337907	ENST00000432005		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000337907	ENST00000529555		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000377464	ENST00000589046		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000377464	ENST00000420450		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000377464	ENST00000526123		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-intron	ENST00000377464	ENST00000432005		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000377464	ENST00000529555		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400907	ENST00000589046		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400907	ENST00000420450		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400907	ENST00000526123		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-intron	ENST00000400907	ENST00000432005		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400907	ENST00000529555		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400908	ENST00000589046		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400908	ENST00000420450		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400908	ENST00000526123		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-intron	ENST00000400908	ENST00000432005		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5CDS-5UTR	ENST00000400908	ENST00000529555		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000476556	ENST00000589046		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000476556	ENST00000420450		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000476556	ENST00000526123		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-intron	ENST00000476556	ENST00000432005		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000476556	ENST00000529555		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000460659	ENST00000589046		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000460659	ENST00000420450		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000460659	ENST00000526123		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-intron	ENST00000460659	ENST00000432005		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
5UTR-5UTR	ENST00000460659	ENST00000529555		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	RERE	chr1	8482787	-	ZNF345	chr19	37367687	+
intron-3CDS	ENST00000543470	ENST00000366966		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-intron	ENST00000543470	ENST00000366964		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-intron	ENST00000543470	ENST00000366968		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-intron	ENST00000543470	ENST00000366965		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-intron	ENST00000543470	ENST00000271776		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-intron	ENST00000543470	ENST00000366967		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-intron	ENST00000543470	ENST00000517399		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
In-frame	ENST00000366960	ENST00000366966		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366960	ENST00000366964		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366960	ENST00000366968		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366960	ENST00000366965		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366960	ENST00000271776		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366960	ENST00000366967		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366960	ENST00000517399		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
In-frame	ENST00000366959	ENST00000366966		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366959	ENST00000366964		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366959	ENST00000366968		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366959	ENST00000366965		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366959	ENST00000271776		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366959	ENST00000366967		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000366959	ENST00000517399		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
In-frame	ENST00000543354	ENST00000366966		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000543354	ENST00000366964		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000543354	ENST00000366968		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000543354	ENST00000366965		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000543354	ENST00000271776		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000543354	ENST00000366967		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
5CDS-intron	ENST00000543354	ENST00000517399		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-3CDS	ENST00000490299	ENST00000366966		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-intron	ENST00000490299	ENST00000366964		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-intron	ENST00000490299	ENST00000366968		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-intron	ENST00000490299	ENST00000366965		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-intron	ENST00000490299	ENST00000271776		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-intron	ENST00000490299	ENST00000366967		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
3UTR-intron	ENST00000490299	ENST00000517399		TCGA	RV	PRAD	TCGA-FC-7961-01A	RPS6KC1	chr1	213349835	+	VASH2	chr1	213161854	+
intron-3CDS	ENST00000265807	ENST00000518421		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000265807	ENST00000174653		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000265807	ENST00000396926		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-intron	ENST00000265807	ENST00000520685		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-intron	ENST00000265807	ENST00000517922		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000518040	ENST00000518421		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000518040	ENST00000174653		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000518040	ENST00000396926		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-intron	ENST00000518040	ENST00000520685		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
intron-intron	ENST00000518040	ENST00000517922		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
5UTR-3CDS	ENST00000519207	ENST00000518421		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
5UTR-3CDS	ENST00000519207	ENST00000174653		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
5UTR-3CDS	ENST00000519207	ENST00000396926		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
5UTR-intron	ENST00000519207	ENST00000520685		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
5UTR-intron	ENST00000519207	ENST00000517922		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171590	+	AP3M2	chr8	42015459	+
5UTR-3CDS	ENST00000222345	ENST00000263274		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
5UTR-3CDS	ENST00000222345	ENST00000536218		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
5UTR-3CDS	ENST00000222345	ENST00000427526		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
5UTR-intron	ENST00000222345	ENST00000599165		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
intron-3CDS	ENST00000476317	ENST00000263274		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
intron-3CDS	ENST00000476317	ENST00000536218		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
intron-3CDS	ENST00000476317	ENST00000427526		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
intron-intron	ENST00000476317	ENST00000599165		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SIPA1L3	chr19	38397998	+	LIG1	chr19	48619222	-
Frame-shit	ENST00000222345	ENST00000388999		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
Frame-shit	ENST00000222345	ENST00000401500		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
Frame-shit	ENST00000222345	ENST00000270301		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
5CDS-3UTR	ENST00000222345	ENST00000378860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
intron-3CDS	ENST00000476317	ENST00000388999		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
intron-3CDS	ENST00000476317	ENST00000401500		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
intron-3CDS	ENST00000476317	ENST00000270301		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
intron-3UTR	ENST00000476317	ENST00000378860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	SIPA1L3	chr19	38643607	+	WDR62	chr19	36549682	+
Frame-shit	ENST00000370112	ENST00000458535		TCGA	RV	PRAD	TCGA-HC-8259-01A	SLC30A7	chr1	101362227	+	CMTM8	chr3	32409364	+
Frame-shit	ENST00000370112	ENST00000307526		TCGA	RV	PRAD	TCGA-HC-8259-01A	SLC30A7	chr1	101362227	+	CMTM8	chr3	32409364	+
Frame-shit	ENST00000357650	ENST00000458535		TCGA	RV	PRAD	TCGA-HC-8259-01A	SLC30A7	chr1	101362227	+	CMTM8	chr3	32409364	+
Frame-shit	ENST00000357650	ENST00000307526		TCGA	RV	PRAD	TCGA-HC-8259-01A	SLC30A7	chr1	101362227	+	CMTM8	chr3	32409364	+
intron-intron	ENST00000261024	ENST00000264818		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000261024	ENST00000524462		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000261024	ENST00000525621		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000261024	ENST00000529370		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000261024	ENST00000529422		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000418714	ENST00000264818		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000418714	ENST00000524462		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000418714	ENST00000525621		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000418714	ENST00000529370		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
intron-intron	ENST00000418714	ENST00000529422		TCGA	RV	PRAD	TCGA-J4-8198-01A	SLC40A1	chr2	190425318	-	TYK2	chr19	10491352	-
In-frame	ENST00000264485	ENST00000361924		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000264485	ENST00000435830		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000264485	ENST00000444882		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000264485	ENST00000356847		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
In-frame	ENST00000425175	ENST00000361924		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000425175	ENST00000435830		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000425175	ENST00000444882		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000425175	ENST00000356847		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-3CDS	ENST00000351898	ENST00000361924		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000351898	ENST00000435830		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000351898	ENST00000444882		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000351898	ENST00000356847		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
In-frame	ENST00000340595	ENST00000361924		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000340595	ENST00000435830		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000340595	ENST00000444882		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
5CDS-intron	ENST00000340595	ENST00000356847		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-3CDS	ENST00000514331	ENST00000361924		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000514331	ENST00000435830		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000514331	ENST00000444882		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000514331	ENST00000356847		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-3CDS	ENST00000512686	ENST00000361924		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000512686	ENST00000435830		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000512686	ENST00000444882		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
intron-intron	ENST00000512686	ENST00000356847		TCGA	RV	PRAD	TCGA-VP-A875-01A	SLC4A4	chr4	72413437	+	GOLGA4	chr3	37396592	+
Frame-shit	ENST00000262435	ENST00000336034		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
Frame-shit	ENST00000262435	ENST00000595337		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
5CDS-5UTR	ENST00000262435	ENST00000593804		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
5CDS-5UTR	ENST00000262435	ENST00000596251		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
5CDS-5UTR	ENST00000262435	ENST00000598727		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
intron-3CDS	ENST00000578200	ENST00000336034		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
intron-3CDS	ENST00000578200	ENST00000595337		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
intron-5UTR	ENST00000578200	ENST00000593804		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
intron-5UTR	ENST00000578200	ENST00000596251		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
intron-5UTR	ENST00000578200	ENST00000598727		TCGA	RV	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42719404	-
5CDS-intron	ENST00000521485	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521485	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521485	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000521485	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521485	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000369694	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000369694	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000369694	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000369694	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000369694	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000195649	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000195649	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000195649	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000195649	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000195649	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000439399	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000439399	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000439399	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000439399	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000439399	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000428679	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000428679	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000428679	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000428679	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000428679	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000437520	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000437520	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000437520	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000437520	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000437520	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521743	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521743	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521743	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000521743	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000521743	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520302	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520302	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520302	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000520302	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520302	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520213	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520213	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520213	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-3UTR	ENST00000520213	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
5CDS-intron	ENST00000520213	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
intron-intron	ENST00000519133	ENST00000369760		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
intron-intron	ENST00000519133	ENST00000356489		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
intron-intron	ENST00000519133	ENST00000320393		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
intron-3UTR	ENST00000519133	ENST00000545529		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
intron-intron	ENST00000519133	ENST00000486968		TCGA	RV	PRAD	TCGA-EJ-7789-01A	SNAP91	chr6	84284729	-	BCKDHB	chr6	80982852	+
Frame-shit	ENST00000553127	ENST00000228705		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000553127	ENST00000551214		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
Frame-shit	ENST00000321898	ENST00000228705		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000321898	ENST00000551214		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
Frame-shit	ENST00000552918	ENST00000228705		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000552918	ENST00000551214		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
Frame-shit	ENST00000547865	ENST00000228705		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000547865	ENST00000551214		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
intron-3CDS	ENST00000552557	ENST00000228705		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
intron-intron	ENST00000552557	ENST00000551214		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SPATS2	chr12	49854820	+	PPM1H	chr12	63226059	-
5CDS-3UTR	ENST00000278742	ENST00000532456		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-intron	ENST00000278742	ENST00000539648		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-intron	ENST00000278742	ENST00000528499		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-intron	ENST00000278742	ENST00000263574		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-intron	ENST00000278742	ENST00000345598		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-intron	ENST00000278742	ENST00000338167		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-intron	ENST00000278742	ENST00000278756		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
5CDS-5UTR	ENST00000278742	ENST00000543137		TCGA	RV	PRAD	TCGA-HC-8265-01A	ST14	chr11	130029955	+	APLP2	chr11	129979324	+
Frame-shit	ENST00000273980	ENST00000360586		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000273980	ENST00000420358		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000273980	ENST00000359167		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000273980	ENST00000421192		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
In-frame	ENST00000432496	ENST00000360586		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
In-frame	ENST00000432496	ENST00000420358		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
In-frame	ENST00000432496	ENST00000359167		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
In-frame	ENST00000432496	ENST00000421192		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000361687	ENST00000360586		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000361687	ENST00000420358		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000361687	ENST00000359167		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000361687	ENST00000421192		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394706	ENST00000360586		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394706	ENST00000420358		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394706	ENST00000359167		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394706	ENST00000421192		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394708	ENST00000360586		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394708	ENST00000420358		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394708	ENST00000359167		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
Frame-shit	ENST00000394708	ENST00000421192		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
5UTR-3CDS	ENST00000514689	ENST00000360586		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
5UTR-3CDS	ENST00000514689	ENST00000420358		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
5UTR-3CDS	ENST00000514689	ENST00000359167		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
5UTR-3CDS	ENST00000514689	ENST00000421192		TCGA	RV	PRAD	TCGA-M7-A725-01A	TBCK	chr4	107092252	-	WDHD1	chr14	55434112	-
In-frame	ENST00000438423	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
In-frame	ENST00000267811	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
In-frame	ENST00000452095	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
In-frame	ENST00000333725	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
In-frame	ENST00000557843	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000560764	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000543579	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000537840	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000343827	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000559710	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
intron-3CDS	ENST00000559703	ENST00000400454		TCGA	RV	PRAD	TCGA-M7-A725-01A	TCF12	chr15	57384089	+	DSCAM	chr21	41741172	-
Frame-shit	ENST00000438423	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000438423	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000438423	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000267811	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000267811	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000452095	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000452095	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000333725	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000333725	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
Frame-shit	ENST00000557843	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
5CDS-intron	ENST00000557843	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000560764	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-intron	ENST00000560764	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000543579	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-intron	ENST00000543579	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000537840	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-intron	ENST00000537840	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000343827	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-intron	ENST00000343827	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559710	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-intron	ENST00000559710	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000394132		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000394136		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000558613		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000262074		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000558663		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000394135		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000394130		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-3CDS	ENST00000559703	ENST00000394129		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
intron-intron	ENST00000559703	ENST00000490671		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TCF12	chr15	57213296	+	TTC23	chr15	99762069	-
5UTR-5UTR	ENST00000545826	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000545826	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000545826	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-intron	ENST00000545826	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000513237	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000513237	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000513237	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-intron	ENST00000513237	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000540549	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000540549	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000540549	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-intron	ENST00000540549	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000380013	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000380013	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000380013	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-intron	ENST00000380013	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
intron-5UTR	ENST00000305737	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
intron-5UTR	ENST00000305737	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
intron-5UTR	ENST00000305737	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
intron-intron	ENST00000305737	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000394764	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000394764	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000394764	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-intron	ENST00000394764	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
3UTR-5UTR	ENST00000504042	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
3UTR-5UTR	ENST00000504042	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
3UTR-5UTR	ENST00000504042	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
3UTR-intron	ENST00000504042	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000413648	ENST00000344442		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000413648	ENST00000509061		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-5UTR	ENST00000413648	ENST00000324052		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-intron	ENST00000413648	ENST00000503898		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TET2	chr4	106068136	+	LARP7	chr4	113565824	+
5UTR-3CDS	ENST00000409968	ENST00000264161		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
5UTR-intron	ENST00000409968	ENST00000537273		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
5UTR-intron	ENST00000409968	ENST00000463008		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-3CDS	ENST00000272643	ENST00000264161		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000272643	ENST00000537273		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000272643	ENST00000463008		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-3CDS	ENST00000413152	ENST00000264161		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000413152	ENST00000537273		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000413152	ENST00000463008		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-3CDS	ENST00000543459	ENST00000264161		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000543459	ENST00000537273		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000543459	ENST00000463008		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-3CDS	ENST00000485379	ENST00000264161		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000485379	ENST00000537273		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
intron-intron	ENST00000485379	ENST00000463008		TCGA	RV	PRAD	TCGA-KK-A59X-01A	THSD7B	chr2	137523257	+	DARS	chr2	136741024	-
Frame-shit	ENST00000256255	ENST00000520408		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
Frame-shit	ENST00000256255	ENST00000310430		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
Frame-shit	ENST00000256255	ENST00000518281		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5CDS-intron	ENST00000256255	ENST00000522110		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5CDS-3UTR	ENST00000256255	ENST00000518027		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000545648	ENST00000520408		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000545648	ENST00000310430		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000545648	ENST00000518281		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-intron	ENST00000545648	ENST00000522110		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3UTR	ENST00000545648	ENST00000518027		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000536273	ENST00000520408		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000536273	ENST00000310430		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000536273	ENST00000518281		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-intron	ENST00000536273	ENST00000522110		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3UTR	ENST00000536273	ENST00000518027		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000521083	ENST00000520408		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000521083	ENST00000310430		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000521083	ENST00000518281		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-intron	ENST00000521083	ENST00000522110		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3UTR	ENST00000521083	ENST00000518027		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TMEM66	chr8	29940363	-	TNKS	chr8	9537461	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000407228	ENST00000527185		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000407228	ENST00000528682		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000407228	ENST00000524871		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000407228	ENST00000418526		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000407228	ENST00000279463		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
intron-intron	ENST00000407228	ENST00000524560		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000219746	ENST00000527185		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000219746	ENST00000528682		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000219746	ENST00000524871		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000219746	ENST00000418526		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000219746	ENST00000279463		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
5CDS-intron	ENST00000219746	ENST00000524560		TCGA	RV	PRAD	TCGA-KK-A59V-01A	TOX3	chr16	52580549	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000291574	ENST00000291535		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
5CDS-intron	ENST00000291574	ENST00000450356		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
5CDS-intron	ENST00000291574	ENST00000319294		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
5CDS-intron	ENST00000291574	ENST00000398367		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-3CDS	ENST00000380221	ENST00000291535		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-intron	ENST00000380221	ENST00000450356		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-intron	ENST00000380221	ENST00000319294		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-intron	ENST00000380221	ENST00000398367		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-3CDS	ENST00000483973	ENST00000291535		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-intron	ENST00000483973	ENST00000450356		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-intron	ENST00000483973	ENST00000319294		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
intron-intron	ENST00000483973	ENST00000398367		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	TRAPPC10	chr21	45504144	+	UBASH3A	chr21	43833133	+
In-frame	ENST00000543351	ENST00000339362		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000543351	ENST00000261908		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000543351	ENST00000558964		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000543351	ENST00000560262		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5CDS-intron	ENST00000543351	ENST00000560352		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000332211	ENST00000339362		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000332211	ENST00000261908		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000332211	ENST00000558964		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
In-frame	ENST00000332211	ENST00000560262		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5CDS-intron	ENST00000332211	ENST00000560352		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
3UTR-3CDS	ENST00000472137	ENST00000339362		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
3UTR-3CDS	ENST00000472137	ENST00000261908		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
3UTR-3CDS	ENST00000472137	ENST00000558964		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
3UTR-3CDS	ENST00000472137	ENST00000560262		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
3UTR-intron	ENST00000472137	ENST00000560352		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000535553	ENST00000339362		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000535553	ENST00000261908		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000535553	ENST00000558964		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000535553	ENST00000560262		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-intron	ENST00000535553	ENST00000560352		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000313132	ENST00000339362		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000313132	ENST00000261908		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000313132	ENST00000558964		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-3CDS	ENST00000313132	ENST00000560262		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5UTR-intron	ENST00000313132	ENST00000560352		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	VDAC2	chr10	76970947	+	NEO1	chr15	73408881	+
5CDS-intron	ENST00000223023	ENST00000331178		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	WASL	chr7	123388672	-	FEZF1	chr7	121944565	-
5CDS-intron	ENST00000223023	ENST00000442488		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	WASL	chr7	123388672	-	FEZF1	chr7	121944565	-
5CDS-intron	ENST00000223023	ENST00000427185		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	WASL	chr7	123388672	-	FEZF1	chr7	121944565	-
In-frame	ENST00000337859	ENST00000430249		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
In-frame	ENST00000337859	ENST00000233072		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
5CDS-intron	ENST00000337859	ENST00000451903		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
5CDS-intron	ENST00000337859	ENST00000497121		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
5UTR-3CDS	ENST00000544130	ENST00000430249		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
5UTR-3CDS	ENST00000544130	ENST00000233072		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
5UTR-intron	ENST00000544130	ENST00000451903		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
5UTR-intron	ENST00000544130	ENST00000497121		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
intron-3CDS	ENST00000468120	ENST00000430249		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
intron-3CDS	ENST00000468120	ENST00000233072		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
intron-intron	ENST00000468120	ENST00000451903		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
intron-intron	ENST00000468120	ENST00000497121		TCGA	RV	PRAD	TCGA-KC-A7F3-01A	ZC3H15	chr2	187351184	+	CPS1	chr2	211454830	+
intron-5UTR	ENST00000573951	ENST00000301738		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000573951	ENST00000564195		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000573951	ENST00000569689		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-5UTR	ENST00000538765	ENST00000301738		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000538765	ENST00000564195		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000538765	ENST00000569689		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
5CDS-5UTR	ENST00000219069	ENST00000301738		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
5CDS-intron	ENST00000219069	ENST00000564195		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
5CDS-intron	ENST00000219069	ENST00000569689		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-5UTR	ENST00000573578	ENST00000301738		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000573578	ENST00000564195		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000573578	ENST00000569689		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-5UTR	ENST00000574253	ENST00000301738		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000574253	ENST00000564195		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
intron-intron	ENST00000574253	ENST00000569689		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	ZNF263	chr16	3341460	+	KCTD5	chr16	2732498	+
5CDS-3UTR	ENST00000252699	ENST00000515137		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000252699	ENST00000265498		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000252699	ENST00000506797		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000424234	ENST00000515137		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000424234	ENST00000265498		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000424234	ENST00000506797		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000390009	ENST00000515137		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000390009	ENST00000265498		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000390009	ENST00000506797		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
intron-3UTR	ENST00000497637	ENST00000515137		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
intron-3UTR	ENST00000497637	ENST00000265498		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
intron-intron	ENST00000497637	ENST00000506797		TCGA	RV	PRAD	TCGA-EJ-A46E-01A	ACTN4	chr19	39138547	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000369905	ENST00000537576		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000369905	ENST00000305242		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000369905	ENST00000545014		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000369905	ENST00000480504		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000369905	ENST00000239715		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
intron-intron	ENST00000470322	ENST00000537576		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
intron-intron	ENST00000470322	ENST00000305242		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
intron-intron	ENST00000470322	ENST00000545014		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
intron-intron	ENST00000470322	ENST00000480504		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
intron-intron	ENST00000470322	ENST00000239715		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000487599	ENST00000537576		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000487599	ENST00000305242		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000487599	ENST00000545014		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000487599	ENST00000480504		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5CDS-intron	ENST00000487599	ENST00000239715		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000545684	ENST00000537576		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000545684	ENST00000305242		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000545684	ENST00000545014		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000545684	ENST00000480504		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000545684	ENST00000239715		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000446605	ENST00000537576		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000446605	ENST00000305242		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000446605	ENST00000545014		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000446605	ENST00000480504		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
5UTR-intron	ENST00000446605	ENST00000239715		TCGA	RV	PRAD	TCGA-G9-6361-01A	ACTR1A	chr10	104262357	-	ARMC4	chr10	28101554	-
Frame-shit	ENST00000295903	ENST00000478300		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000295903	ENST00000295894		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000295903	ENST00000479198		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000295903	ENST00000478744		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000295903	ENST00000460711		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000295903	ENST00000465156		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000498707	ENST00000478300		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000498707	ENST00000295894		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
Frame-shit	ENST00000498707	ENST00000479198		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000498707	ENST00000478744		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000498707	ENST00000460711		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
5CDS-3UTR	ENST00000498707	ENST00000465156		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000467257	ENST00000478300		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000467257	ENST00000295894		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000467257	ENST00000479198		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000467257	ENST00000478744		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000467257	ENST00000460711		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000467257	ENST00000465156		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000459780	ENST00000478300		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000459780	ENST00000295894		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3CDS	ENST00000459780	ENST00000479198		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000459780	ENST00000478744		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000459780	ENST00000460711		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
intron-3UTR	ENST00000459780	ENST00000465156		TCGA	RV	PRAD	TCGA-J4-A83J-01A	ADAMTS9	chr3	64579934	-	SYNPR	chr3	63542219	+
In-frame	ENST00000355272	ENST00000304372		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000355272	ENST00000562860		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
In-frame	ENST00000356926	ENST00000304372		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000356926	ENST00000562860		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
In-frame	ENST00000350812	ENST00000304372		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000350812	ENST00000562860		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
In-frame	ENST00000345016	ENST00000304372		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000345016	ENST00000562860		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000590683	ENST00000304372		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
intron-intron	ENST00000590683	ENST00000562860		TCGA	RV	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2137726	-	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000337414	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000337414	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000337414	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000337414	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000337414	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380718	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380718	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380718	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380718	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000380718	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380732	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380732	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380732	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000380732	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000380732	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000534860	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000534860	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000534860	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000534860	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000534860	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
5UTR-3CDS	ENST00000380736	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
5UTR-3CDS	ENST00000380736	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
5UTR-3CDS	ENST00000380736	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
5UTR-3CDS	ENST00000380736	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
5UTR-intron	ENST00000380736	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000303025	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000303025	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000303025	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000303025	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000303025	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000413512	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000413512	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000413512	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000413512	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000413512	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000491514	ENST00000377967		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000491514	ENST00000382899		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000491514	ENST00000536777		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000491514	ENST00000543216		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-intron	ENST00000491514	ENST00000479423		TCGA	RV	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44922667	+
intron-3CDS	ENST00000369760	ENST00000369705		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
intron-intron	ENST00000369760	ENST00000541327		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
intron-intron	ENST00000369760	ENST00000543031		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
In-frame	ENST00000356489	ENST00000369705		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
5CDS-intron	ENST00000356489	ENST00000541327		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
5CDS-intron	ENST00000356489	ENST00000543031		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
In-frame	ENST00000320393	ENST00000369705		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
5CDS-intron	ENST00000320393	ENST00000541327		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
5CDS-intron	ENST00000320393	ENST00000543031		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
3UTR-3CDS	ENST00000545529	ENST00000369705		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
3UTR-intron	ENST00000545529	ENST00000541327		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
3UTR-intron	ENST00000545529	ENST00000543031		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
intron-3CDS	ENST00000486968	ENST00000369705		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
intron-intron	ENST00000486968	ENST00000541327		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
intron-intron	ENST00000486968	ENST00000543031		TCGA	RV	PRAD	TCGA-EJ-7789-01A	BCKDHB	chr6	80912929	+	ME1	chr6	84117620	-
5CDS-5UTR	ENST00000589718	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000589718	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000589718	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000586576	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000586576	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000586576	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000484949	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000484949	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
intron-intron	ENST00000484949	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000308721	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000308721	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000308721	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000396367	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000396367	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000396367	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000266434	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000266434	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000266434	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000396369	ENST00000332427		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000396369	ENST00000537507		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000396369	ENST00000540510		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	BCL2L14	chr12	12240320	+	GPR19	chr12	12848445	-
Frame-shit	ENST00000421745	ENST00000318522		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	BIRC6	chr2	32774548	+	EML4	chr2	42515367	+
Frame-shit	ENST00000421745	ENST00000402711		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	BIRC6	chr2	32774548	+	EML4	chr2	42515367	+
5CDS-intron	ENST00000421745	ENST00000482660		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	BIRC6	chr2	32774548	+	EML4	chr2	42515367	+
5CDS-intron	ENST00000421745	ENST00000401738		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	BIRC6	chr2	32774548	+	EML4	chr2	42515367	+
5CDS-intron	ENST00000421745	ENST00000453191		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	BIRC6	chr2	32774548	+	EML4	chr2	42515367	+
Frame-shit	ENST00000403396	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000403396	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000403396	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000403396	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000518235	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000518235	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000518235	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000518235	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000520698	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000520698	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000520698	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000520698	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000376931	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000376931	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000376931	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000376931	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-3CDS	ENST00000523267	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-3CDS	ENST00000523267	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-3CDS	ENST00000523267	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-intron	ENST00000523267	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000518219	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000518219	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000518219	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000518219	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000523084	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000523084	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000523084	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000523084	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000292586	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000292586	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
Frame-shit	ENST00000292586	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
5CDS-intron	ENST00000292586	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-3CDS	ENST00000521333	ENST00000522208		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-3CDS	ENST00000521333	ENST00000521389		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-3CDS	ENST00000521333	ENST00000261947		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
intron-intron	ENST00000521333	ENST00000520564		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	C5orf45	chr5	179268907	-	RNF130	chr5	179440311	-
In-frame	ENST00000256443	ENST00000380637		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
In-frame	ENST00000256443	ENST00000380634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5CDS-intron	ENST00000256443	ENST00000458295		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5CDS-intron	ENST00000256443	ENST00000380631		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5CDS-intron	ENST00000256443	ENST00000333634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
In-frame	ENST00000514676	ENST00000380637		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
In-frame	ENST00000514676	ENST00000380634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5CDS-intron	ENST00000514676	ENST00000458295		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5CDS-intron	ENST00000514676	ENST00000380631		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5CDS-intron	ENST00000514676	ENST00000333634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5UTR-3CDS	ENST00000502604	ENST00000380637		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5UTR-3CDS	ENST00000502604	ENST00000380634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5UTR-intron	ENST00000502604	ENST00000458295		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5UTR-intron	ENST00000502604	ENST00000380631		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
5UTR-intron	ENST00000502604	ENST00000333634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
3UTR-3CDS	ENST00000513629	ENST00000380637		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
3UTR-3CDS	ENST00000513629	ENST00000380634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
3UTR-intron	ENST00000513629	ENST00000458295		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
3UTR-intron	ENST00000513629	ENST00000380631		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
3UTR-intron	ENST00000513629	ENST00000333634		TCGA	RV	PRAD	TCGA-ZG-A9NI-01A	CDK7	chr5	68531280	+	SH3BGR	chr21	40871749	+
Frame-shit	ENST00000367607	ENST00000371065		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CEP350	chr1	180047809	+	LEPROT	chr1	65897486	+
5CDS-intron	ENST00000367607	ENST00000484243		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CEP350	chr1	180047809	+	LEPROT	chr1	65897486	+
intron-3CDS	ENST00000490141	ENST00000371065		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CEP350	chr1	180047809	+	LEPROT	chr1	65897486	+
intron-intron	ENST00000490141	ENST00000484243		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	CEP350	chr1	180047809	+	LEPROT	chr1	65897486	+
5CDS-intron	ENST00000431239	ENST00000335123		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CHD1L	chr1	146747131	+	LCE1A	chr1	152799927	+
5CDS-intron	ENST00000369259	ENST00000335123		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CHD1L	chr1	146747131	+	LCE1A	chr1	152799927	+
5CDS-intron	ENST00000369258	ENST00000335123		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CHD1L	chr1	146747131	+	LCE1A	chr1	152799927	+
3UTR-intron	ENST00000467213	ENST00000335123		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CHD1L	chr1	146747131	+	LCE1A	chr1	152799927	+
5CDS-intron	ENST00000361293	ENST00000335123		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CHD1L	chr1	146747131	+	LCE1A	chr1	152799927	+
5CDS-5UTR	ENST00000251166	ENST00000602377		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5CDS-5UTR	ENST00000251166	ENST00000268797		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5UTR-5UTR	ENST00000539968	ENST00000602377		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5UTR-5UTR	ENST00000539968	ENST00000268797		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5CDS-5UTR	ENST00000537233	ENST00000602377		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5CDS-5UTR	ENST00000537233	ENST00000268797		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5CDS-5UTR	ENST00000574025	ENST00000602377		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
5CDS-5UTR	ENST00000574025	ENST00000268797		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
intron-5UTR	ENST00000423908	ENST00000602377		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
intron-5UTR	ENST00000423908	ENST00000268797		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
intron-5UTR	ENST00000577144	ENST00000602377		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
intron-5UTR	ENST00000577144	ENST00000268797		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	CORO7	chr16	4455492	-	GFOD2	chr16	67709956	-
Frame-shit	ENST00000454498	ENST00000306353		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000454498	ENST00000334462		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000454498	ENST00000409668		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000332246	ENST00000306353		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000332246	ENST00000334462		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000332246	ENST00000409668		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000311540	ENST00000306353		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000311540	ENST00000334462		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000311540	ENST00000409668		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000522854	ENST00000306353		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000522854	ENST00000334462		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
Frame-shit	ENST00000522854	ENST00000409668		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
In-frame	ENST00000544602	ENST00000306353		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
In-frame	ENST00000544602	ENST00000334462		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
In-frame	ENST00000544602	ENST00000409668		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
5UTR-3CDS	ENST00000518542	ENST00000306353		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
5UTR-3CDS	ENST00000518542	ENST00000334462		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
5UTR-3CDS	ENST00000518542	ENST00000409668		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	CSGALNACT1	chr8	19315937	-	TMEM150A	chr2	85826825	-
In-frame	ENST00000398309	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
Frame-shit	ENST00000376104	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000418306	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000280241	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000543673	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
Frame-shit	ENST00000376106	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000330014	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
Frame-shit	ENST00000537455	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000524982	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000532653	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000531015	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
intron-3CDS	ENST00000398301	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
Frame-shit	ENST00000426717	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
Frame-shit	ENST00000404783	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
Frame-shit	ENST00000398304	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
In-frame	ENST00000530800	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
intron-3CDS	ENST00000472545	ENST00000375707		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	DLG2	chr11	83252725	-	CARD17	chr11	104970148	-
5CDS-intron	ENST00000280333	ENST00000566442		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42622774	+
5CDS-intron	ENST00000280333	ENST00000318010		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42622774	+
5CDS-intron	ENST00000280333	ENST00000440615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42622774	+
intron-intron	ENST00000484400	ENST00000566442		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42622774	+
intron-intron	ENST00000484400	ENST00000318010		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42622774	+
intron-intron	ENST00000484400	ENST00000440615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42622774	+
In-frame	ENST00000344450	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000344450	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000344450	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000344450	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000344450	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000344450	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000344450	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
Frame-shit	ENST00000603453	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000603453	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000603453	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000603453	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000603453	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000603453	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000603453	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
In-frame	ENST00000605315	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000605315	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000605315	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000605315	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000605315	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000605315	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000605315	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
Frame-shit	ENST00000419235	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000419235	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000419235	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000419235	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000419235	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000419235	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000419235	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-3CDS	ENST00000605035	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-intron	ENST00000605035	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-intron	ENST00000605035	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-intron	ENST00000605035	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-intron	ENST00000605035	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-intron	ENST00000605035	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
3UTR-intron	ENST00000605035	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-3CDS	ENST00000605863	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000605863	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000605863	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000605863	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000605863	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000605863	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000605863	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-3CDS	ENST00000603290	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000603290	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000603290	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000603290	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000603290	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000603290	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
intron-intron	ENST00000603290	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
Frame-shit	ENST00000604971	ENST00000230419		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000604971	ENST00000349241		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000604971	ENST00000345201		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000604971	ENST00000352931		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000604971	ENST00000481273		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000604971	ENST00000476760		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000604971	ENST00000471863		TCGA	RV	PRAD	TCGA-EJ-A65E-01A	DUSP22	chr6	348841	+	PTK7	chr6	43106587	+
5CDS-intron	ENST00000239938	ENST00000270189		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000239938	ENST00000429089		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000239938	ENST00000220809		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000239938	ENST00000352041		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000239938	ENST00000519510		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000239938	ENST00000429710		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000239938	ENST00000524009		TCGA	RV	PRAD	TCGA-EJ-7314-01A	EGR1	chr5	137805004	+	PLAT	chr8	42051245	-
intron-3CDS	ENST00000398907	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398907	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398907	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000398907	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398905	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398905	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398905	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000398905	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000288319	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000288319	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000288319	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000288319	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000398897	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000398897	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000398897	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-intron	ENST00000398897	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398911	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398911	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398911	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000398911	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000398910	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000398910	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000398910	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000398910	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000417133	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000417133	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000417133	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000417133	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000442448	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000442448	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000442448	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000442448	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000453032	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000453032	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000453032	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000453032	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398919	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398919	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398919	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000398919	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000429727	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000429727	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000429727	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000429727	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000485493	ENST00000332149		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000485493	ENST00000398585		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000485493	ENST00000458356		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-intron	ENST00000485493	ENST00000497881		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-5UTR	ENST00000368192	ENST00000368141		TCGA	RV	PRAD	TCGA-G9-7510-01A	ETV3	chr1	157103904	-	MNDA	chr1	158811924	+
5CDS-3UTR	ENST00000368192	ENST00000491210		TCGA	RV	PRAD	TCGA-G9-7510-01A	ETV3	chr1	157103904	-	MNDA	chr1	158811924	+
intron-5UTR	ENST00000326786	ENST00000368141		TCGA	RV	PRAD	TCGA-G9-7510-01A	ETV3	chr1	157103904	-	MNDA	chr1	158811924	+
intron-3UTR	ENST00000326786	ENST00000491210		TCGA	RV	PRAD	TCGA-G9-7510-01A	ETV3	chr1	157103904	-	MNDA	chr1	158811924	+
intron-5UTR	ENST00000460850	ENST00000368141		TCGA	RV	PRAD	TCGA-G9-7510-01A	ETV3	chr1	157103904	-	MNDA	chr1	158811924	+
intron-3UTR	ENST00000460850	ENST00000491210		TCGA	RV	PRAD	TCGA-G9-7510-01A	ETV3	chr1	157103904	-	MNDA	chr1	158811924	+
In-frame	ENST00000396153	ENST00000447632		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
In-frame	ENST00000396153	ENST00000413473		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
In-frame	ENST00000396153	ENST00000262675		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
In-frame	ENST00000396153	ENST00000451380		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
In-frame	ENST00000396153	ENST00000371750		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
In-frame	ENST00000396153	ENST00000371747		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-intron	ENST00000396153	ENST00000262676		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-5UTR	ENST00000396153	ENST00000530004		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-intron	ENST00000396153	ENST00000534098		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
Frame-shit	ENST00000371778	ENST00000447632		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
Frame-shit	ENST00000371778	ENST00000413473		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
Frame-shit	ENST00000371778	ENST00000262675		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
Frame-shit	ENST00000371778	ENST00000451380		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
Frame-shit	ENST00000371778	ENST00000371750		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
Frame-shit	ENST00000371778	ENST00000371747		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-intron	ENST00000371778	ENST00000262676		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-5UTR	ENST00000371778	ENST00000530004		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-intron	ENST00000371778	ENST00000534098		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000545823	ENST00000447632		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000545823	ENST00000413473		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000545823	ENST00000262675		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000545823	ENST00000451380		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000545823	ENST00000371750		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000545823	ENST00000371747		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-intron	ENST00000545823	ENST00000262676		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-5UTR	ENST00000545823	ENST00000530004		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-intron	ENST00000545823	ENST00000534098		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000472808	ENST00000447632		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000472808	ENST00000413473		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000472808	ENST00000262675		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000472808	ENST00000451380		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000472808	ENST00000371750		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-3CDS	ENST00000472808	ENST00000371747		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-intron	ENST00000472808	ENST00000262676		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-5UTR	ENST00000472808	ENST00000530004		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
intron-intron	ENST00000472808	ENST00000534098		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	FAF1	chr1	51121114	-	TTC39A	chr1	51761842	-
5CDS-intron	ENST00000354955	ENST00000371917		TCGA	RV	PRAD	TCGA-H9-7775-01A	FMOD	chr1	203309756	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000354955	ENST00000493140		TCGA	RV	PRAD	TCGA-H9-7775-01A	FMOD	chr1	203309756	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000493296	ENST00000371917		TCGA	RV	PRAD	TCGA-H9-7775-01A	FMOD	chr1	203309756	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000493296	ENST00000493140		TCGA	RV	PRAD	TCGA-H9-7775-01A	FMOD	chr1	203309756	-	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000318789	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000318789	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000318789	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000475937	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000475937	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000475937	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000493089	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000493089	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000493089	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
In-frame	ENST00000484350	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
In-frame	ENST00000484350	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000484350	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
intron-3CDS	ENST00000318779	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
intron-3CDS	ENST00000318779	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
intron-intron	ENST00000318779	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000491238	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000491238	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000491238	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000498215	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000498215	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000498215	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000468577	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
Frame-shit	ENST00000468577	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
5CDS-intron	ENST00000468577	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
intron-3CDS	ENST00000472382	ENST00000375990		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
intron-3CDS	ENST00000472382	ENST00000259253		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
intron-intron	ENST00000472382	ENST00000465836		TCGA	RV	PRAD	TCGA-VP-A87K-01A	FOXP1	chr3	71037145	-	UGGT1	chr2	128941249	+
In-frame	ENST00000264899	ENST00000315567		TCGA	RV	PRAD	TCGA-CH-5794-01A	FRAS1	chr4	78979239	+	MRPL1	chr4	78792898	+
5CDS-intron	ENST00000264899	ENST00000506674		TCGA	RV	PRAD	TCGA-CH-5794-01A	FRAS1	chr4	78979239	+	MRPL1	chr4	78792898	+
In-frame	ENST00000325942	ENST00000315567		TCGA	RV	PRAD	TCGA-CH-5794-01A	FRAS1	chr4	78979239	+	MRPL1	chr4	78792898	+
5CDS-intron	ENST00000325942	ENST00000506674		TCGA	RV	PRAD	TCGA-CH-5794-01A	FRAS1	chr4	78979239	+	MRPL1	chr4	78792898	+
In-frame	ENST00000264895	ENST00000315567		TCGA	RV	PRAD	TCGA-CH-5794-01A	FRAS1	chr4	78979239	+	MRPL1	chr4	78792898	+
5CDS-intron	ENST00000264895	ENST00000506674		TCGA	RV	PRAD	TCGA-CH-5794-01A	FRAS1	chr4	78979239	+	MRPL1	chr4	78792898	+
5UTR-3CDS	ENST00000299293	ENST00000336061		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000299293	ENST00000542104		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-intron	ENST00000299293	ENST00000540088		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000549921	ENST00000336061		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000549921	ENST00000542104		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-intron	ENST00000549921	ENST00000540088		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000550389	ENST00000336061		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-3CDS	ENST00000550389	ENST00000542104		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
5UTR-intron	ENST00000550389	ENST00000540088		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
intron-3CDS	ENST00000397997	ENST00000336061		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
intron-3CDS	ENST00000397997	ENST00000542104		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
intron-intron	ENST00000397997	ENST00000540088		TCGA	RV	PRAD	TCGA-HC-8265-01A	FRS2	chr12	69864310	+	RASSF3	chr12	65078567	+
In-frame	ENST00000250113	ENST00000040877		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	FXR2	chr17	7508963	-	TARBP1	chr1	234566047	-
5CDS-intron	ENST00000250113	ENST00000483404		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	FXR2	chr17	7508963	-	TARBP1	chr1	234566047	-
intron-3CDS	ENST00000573057	ENST00000040877		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	FXR2	chr17	7508963	-	TARBP1	chr1	234566047	-
intron-intron	ENST00000573057	ENST00000483404		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	FXR2	chr17	7508963	-	TARBP1	chr1	234566047	-
intron-intron	ENST00000248923	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000248923	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000248923	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000400382	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000400382	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000400382	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000400383	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000400383	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000400383	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000400380	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000400380	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000400380	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000406383	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000406383	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000406383	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000466310	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000466310	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000466310	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000401885	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000401885	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000401885	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000404532	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000404532	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000404532	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000403838	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000403838	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000403838	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000404223	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000404223	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000404223	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-intron	ENST00000404920	ENST00000420436		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000404920	ENST00000334029		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
intron-5UTR	ENST00000404920	ENST00000357068		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	GGT1	chr22	24990853	+	PRODH	chr22	18918711	-
Frame-shit	ENST00000313949	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000313949	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000313949	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000313949	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371098	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000371098	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000371098	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000371075	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371075	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371075	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371100	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371100	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371100	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371099	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000371099	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000371099	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371102	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371102	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371102	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
Frame-shit	ENST00000464624	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000464624	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000464624	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000306120	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000306120	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000306120	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371095	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371095	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371095	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000371085	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371085	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000371085	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000354359	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000354359	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000354359	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265620	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000265620	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000265620	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000306090	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000306090	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000306090	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000421182		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000357867		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000323926		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000336916		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000354785		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000357009		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000346544		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000345488		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000359671		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000446046		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000443816		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000432072		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000371081	ENST00000356005		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000371081	ENST00000490833		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
intron-intron	ENST00000371081	ENST00000426059		TCGA	RV	PRAD	TCGA-G9-6496-01A	GNAS	chr20	57486247	+	FN1	chr2	216274837	-
In-frame	ENST00000265070	ENST00000304460		TCGA	RV	PRAD	TCGA-EJ-5496-01A	GOLPH3	chr5	32173916	-	SLC6A19	chr5	1219018	+
5UTR-3CDS	ENST00000512668	ENST00000304460		TCGA	RV	PRAD	TCGA-EJ-5496-01A	GOLPH3	chr5	32173916	-	SLC6A19	chr5	1219018	+
5UTR-3CDS	ENST00000355897	ENST00000392750		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000473645		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000497056		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000492396		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000461494		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000470131		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000487947		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-3CDS	ENST00000355897	ENST00000471885		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
5UTR-intron	ENST00000355897	ENST00000487678		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000392750		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000473645		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000497056		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000492396		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000461494		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000470131		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000487947		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-3CDS	ENST00000482813	ENST00000471885		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
3UTR-intron	ENST00000482813	ENST00000487678		TCGA	RV	PRAD	TCGA-VP-A876-01A	GPR160	chr3	169756831	+	PDCD10	chr3	167405104	-
Frame-shit	ENST00000221130	ENST00000220876		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000221130	ENST00000518111		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000221130	ENST00000518491		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000414019	ENST00000220876		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000414019	ENST00000518111		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000414019	ENST00000518491		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000546342	ENST00000220876		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000546342	ENST00000518111		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000546342	ENST00000518491		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000537535	ENST00000220876		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000537535	ENST00000518111		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000537535	ENST00000518491		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000541648	ENST00000220876		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
Frame-shit	ENST00000541648	ENST00000518111		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000541648	ENST00000518491		TCGA	RV	PRAD	TCGA-KK-A7AV-01A	GSR	chr8	30557598	-	STMN2	chr8	80549037	+
In-frame	ENST00000222690	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000222690	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000222690	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000222690	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000222690	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000437072	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000437072	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000437072	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000437072	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000437072	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000349299	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000349299	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000349299	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000349299	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000349299	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000308153	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000308153	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000308153	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000308153	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000308153	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000350771	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000350771	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000350771	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000350771	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000350771	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000381124	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000381124	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000381124	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000381124	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000381124	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000521529	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000521529	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000521529	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000521529	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000521529	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000446531	ENST00000407835		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000446531	ENST00000437685		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
In-frame	ENST00000446531	ENST00000263201		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000446531	ENST00000483431		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-3UTR	ENST00000446531	ENST00000404724		TCGA	RV	PRAD	TCGA-VP-A87J-01A	H2AFV	chr7	44887568	-	CDC45	chr22	19467681	+
5CDS-5UTR	ENST00000372582	ENST00000487143		TCGA	RV	PRAD	TCGA-EJ-7782-01A	IL1RAPL2	chrX	104478688	+	STK39	chr2	168821236	-
5CDS-5UTR	ENST00000372582	ENST00000355999		TCGA	RV	PRAD	TCGA-EJ-7782-01A	IL1RAPL2	chrX	104478688	+	STK39	chr2	168821236	-
5CDS-5UTR	ENST00000344799	ENST00000487143		TCGA	RV	PRAD	TCGA-EJ-7782-01A	IL1RAPL2	chrX	104478688	+	STK39	chr2	168821236	-
5CDS-5UTR	ENST00000344799	ENST00000355999		TCGA	RV	PRAD	TCGA-EJ-7782-01A	IL1RAPL2	chrX	104478688	+	STK39	chr2	168821236	-
intron-5UTR	ENST00000485671	ENST00000487143		TCGA	RV	PRAD	TCGA-EJ-7782-01A	IL1RAPL2	chrX	104478688	+	STK39	chr2	168821236	-
intron-5UTR	ENST00000485671	ENST00000355999		TCGA	RV	PRAD	TCGA-EJ-7782-01A	IL1RAPL2	chrX	104478688	+	STK39	chr2	168821236	-
In-frame	ENST00000381298	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
In-frame	ENST00000381298	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000381298	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
In-frame	ENST00000336909	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
In-frame	ENST00000336909	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000336909	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-3CDS	ENST00000381287	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-3CDS	ENST00000381287	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-intron	ENST00000381287	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
Frame-shit	ENST00000502326	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
Frame-shit	ENST00000502326	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000502326	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
In-frame	ENST00000381294	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
In-frame	ENST00000381294	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000381294	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-3CDS	ENST00000536319	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-3CDS	ENST00000536319	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-intron	ENST00000536319	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000381293	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000381293	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-intron	ENST00000381293	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000381286	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000381286	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-intron	ENST00000381286	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-3CDS	ENST00000522633	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-3CDS	ENST00000522633	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
3UTR-intron	ENST00000522633	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000396816	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000396816	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-intron	ENST00000396816	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000577363	ENST00000493293		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000577363	ENST00000264144		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
intron-intron	ENST00000577363	ENST00000461729		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	IL6ST	chr5	55247292	-	LAMC2	chr1	183177016	+
In-frame	ENST00000377069	ENST00000299798		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
5CDS-intron	ENST00000377069	ENST00000561472		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
intron-3CDS	ENST00000542973	ENST00000299798		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
intron-intron	ENST00000542973	ENST00000561472		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
In-frame	ENST00000377071	ENST00000299798		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
5CDS-intron	ENST00000377071	ENST00000561472		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
Frame-shit	ENST00000536437	ENST00000299798		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
5CDS-intron	ENST00000536437	ENST00000561472		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
In-frame	ENST00000538046	ENST00000299798		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
5CDS-intron	ENST00000538046	ENST00000561472		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
intron-3CDS	ENST00000543852	ENST00000299798		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
intron-intron	ENST00000543852	ENST00000561472		TCGA	RV	PRAD	TCGA-HC-8266-01A	KDM2B	chr12	122012452	-	SLC9A5	chr16	67304641	+
intron-3CDS	ENST00000542728	ENST00000080059		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
intron-3CDS	ENST00000542728	ENST00000354334		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
intron-3CDS	ENST00000542728	ENST00000552960		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
intron-3CDS	ENST00000542728	ENST00000380610		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
intron-3CDS	ENST00000542728	ENST00000427332		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
intron-3CDS	ENST00000542728	ENST00000488927		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000314565	ENST00000080059		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000314565	ENST00000354334		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000314565	ENST00000552960		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000314565	ENST00000380610		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000314565	ENST00000427332		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
Frame-shit	ENST00000314565	ENST00000488927		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000298571	ENST00000080059		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000298571	ENST00000354334		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000298571	ENST00000552960		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000298571	ENST00000380610		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000298571	ENST00000427332		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
Frame-shit	ENST00000298571	ENST00000488927		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	LOH12CR1	chr12	12510443	+	HDAC7	chr12	48185787	-
In-frame	ENST00000458517	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000458517	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000458517	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000458517	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000458517	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000458517	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000458517	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000458517	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000458517	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000458517	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000458517	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000362019	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000362019	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000362019	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000362019	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000362019	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000362019	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000362019	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000362019	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000362019	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000362019	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000362019	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000367737	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000367737	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000367737	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000367737	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000367737	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000367737	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-5UTR	ENST00000367737	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-5UTR	ENST00000367737	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-intron	ENST00000367737	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-intron	ENST00000367737	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-intron	ENST00000367737	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000361735	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000361735	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000361735	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000361735	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000361735	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
In-frame	ENST00000361735	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000361735	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000361735	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000361735	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000361735	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-intron	ENST00000361735	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000466643	ENST00000264211		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000466643	ENST00000400422		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000466643	ENST00000602326		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000466643	ENST00000374935		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000466643	ENST00000374937		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-3CDS	ENST00000466643	ENST00000536266		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-5UTR	ENST00000466643	ENST00000374933		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-5UTR	ENST00000466643	ENST00000544689		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-intron	ENST00000466643	ENST00000356916		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-intron	ENST00000466643	ENST00000374927		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
intron-intron	ENST00000466643	ENST00000537738		TCGA	RV	PRAD	TCGA-CH-5771-01A	METTL13	chr1	171753639	+	EIF4G3	chr1	21231464	-
5CDS-5UTR	ENST00000355630	ENST00000455225		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000531909		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000528724		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000531262		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000532156		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000279968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000532407		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000526175		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000527766		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000529609		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000529583		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000355630	ENST00000527271		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000455225		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000531909		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000528724		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000531262		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000532156		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000279968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000532407		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000526175		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000527766		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000529609		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000529583		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000396617	ENST00000527271		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000455225		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000531909		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000528724		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000531262		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000532156		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000279968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000532407		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000526175		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000527766		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000529609		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000529583		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402042	ENST00000527271		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000455225		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000531909		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000528724		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000531262		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000532156		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000279968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000532407		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000526175		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000527766		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000529609		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000529583		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000466278	ENST00000527271		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000455225		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000531909		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000528724		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000531262		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000532156		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000279968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000532407		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000526175		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000527766		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000529609		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000529583		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
5CDS-5UTR	ENST00000407029	ENST00000527271		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000455225		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000531909		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000528724		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000531262		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000532156		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000279968		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000532407		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000526175		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000527766		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000529609		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000529583		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
intron-5UTR	ENST00000402630	ENST00000527271		TCGA	RV	PRAD	TCGA-EJ-8472-01A	MKL1	chr22	40819540	-	TMEM218	chr11	124972705	-
In-frame	ENST00000303375	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000303375	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000303375	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
5CDS-intron	ENST00000303375	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-3CDS	ENST00000446119	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000446119	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000446119	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000446119	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-3CDS	ENST00000580916	ENST00000373880		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000580916	ENST00000433653		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000580916	ENST00000373878		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
intron-intron	ENST00000580916	ENST00000472199		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MRC2	chr17	60705281	+	PHYHIPL	chr10	61004817	+
In-frame	ENST00000454872	ENST00000457714		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
In-frame	ENST00000454872	ENST00000361589		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
In-frame	ENST00000454872	ENST00000401917		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
In-frame	ENST00000454872	ENST00000545397		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000454872	ENST00000466350		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000473253	ENST00000457714		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000473253	ENST00000361589		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000473253	ENST00000401917		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
intron-3CDS	ENST00000473253	ENST00000545397		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
intron-3UTR	ENST00000473253	ENST00000466350		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	NAALADL2	chr3	174577240	+	NLGN1	chr3	173993105	+
Frame-shit	ENST00000268712	ENST00000499676		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000489671		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000486111		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000477292		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000495310		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000467072		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000317104		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000310282		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000479040		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000268712	ENST00000397991		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
5CDS-intron	ENST00000268712	ENST00000464782		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000499676		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000489671		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000486111		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000477292		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000495310		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000467072		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000317104		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000310282		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000479040		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395851	ENST00000397991		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
5CDS-intron	ENST00000395851	ENST00000464782		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000499676		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000489671		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000486111		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000477292		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000495310		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000467072		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000317104		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000310282		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000479040		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
Frame-shit	ENST00000395857	ENST00000397991		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
5CDS-intron	ENST00000395857	ENST00000464782		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000499676		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000489671		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000486111		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000477292		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000495310		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000467072		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000317104		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000310282		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000479040		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000395848	ENST00000397991		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-intron	ENST00000395848	ENST00000464782		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000499676		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000489671		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000486111		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000477292		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000495310		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000467072		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000317104		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000310282		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000479040		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-3CDS	ENST00000583226	ENST00000397991		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
intron-intron	ENST00000583226	ENST00000464782		TCGA	RV	PRAD	TCGA-V1-A9ZI-01A	NCOR1	chr17	15960828	-	TFDP2	chr3	141693033	-
In-frame	ENST00000356462	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5CDS-3UTR	ENST00000356462	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
In-frame	ENST00000400345	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5CDS-3UTR	ENST00000400345	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
intron-3CDS	ENST00000589054	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
intron-3UTR	ENST00000589054	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5UTR-3CDS	ENST00000256832	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5UTR-3UTR	ENST00000256832	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
In-frame	ENST00000382850	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5CDS-3UTR	ENST00000382850	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
In-frame	ENST00000256830	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5CDS-3UTR	ENST00000256830	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
3UTR-3CDS	ENST00000588516	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
3UTR-3UTR	ENST00000588516	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5UTR-3CDS	ENST00000456986	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5UTR-3UTR	ENST00000456986	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5UTR-3CDS	ENST00000435432	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5UTR-3UTR	ENST00000435432	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
In-frame	ENST00000357895	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5CDS-3UTR	ENST00000357895	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
In-frame	ENST00000586263	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
5CDS-3UTR	ENST00000586263	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
intron-3CDS	ENST00000456173	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
intron-3UTR	ENST00000456173	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
intron-3CDS	ENST00000431212	ENST00000400485		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
intron-3UTR	ENST00000431212	ENST00000487909		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	NEDD4L	chr18	55833093	+	MORC3	chr21	37728918	+
Frame-shit	ENST00000337179	ENST00000321990		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93772197	+	ATAD5	chr17	29187451	+
Frame-shit	ENST00000415493	ENST00000321990		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93772197	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000549992	ENST00000321990		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93772197	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000548662	ENST00000321990		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93772197	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000547014	ENST00000321990		TCGA	RV	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93772197	+	ATAD5	chr17	29187451	+
Frame-shit	ENST00000395782	ENST00000321105		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000395782	ENST00000540524		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000395782	ENST00000542570		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
5CDS-intron	ENST00000395782	ENST00000582230		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
In-frame	ENST00000395783	ENST00000321105		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
In-frame	ENST00000395783	ENST00000540524		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
In-frame	ENST00000395783	ENST00000542570		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
5CDS-intron	ENST00000395783	ENST00000582230		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000435340	ENST00000321105		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000435340	ENST00000540524		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000435340	ENST00000542570		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
5CDS-intron	ENST00000435340	ENST00000582230		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000255389	ENST00000321105		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000255389	ENST00000540524		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000255389	ENST00000542570		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
5CDS-intron	ENST00000255389	ENST00000582230		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000395781	ENST00000321105		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000395781	ENST00000540524		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
Frame-shit	ENST00000395781	ENST00000542570		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
5CDS-intron	ENST00000395781	ENST00000582230		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
intron-3CDS	ENST00000484838	ENST00000321105		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
intron-3CDS	ENST00000484838	ENST00000540524		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
intron-3CDS	ENST00000484838	ENST00000542570		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
intron-intron	ENST00000484838	ENST00000582230		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	PEMT	chr17	17480234	-	TOP3A	chr17	18183972	-
intron-3CDS	ENST00000361417	ENST00000361756		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000361417	ENST00000533380		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000361417	ENST00000393713		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000361417	ENST00000490867		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000361417	ENST00000545854		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000361417	ENST00000530137		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
5UTR-3CDS	ENST00000356063	ENST00000361756		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
5UTR-3CDS	ENST00000356063	ENST00000533380		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
5UTR-3CDS	ENST00000356063	ENST00000393713		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
5UTR-3UTR	ENST00000356063	ENST00000490867		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
5UTR-5UTR	ENST00000356063	ENST00000545854		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
5UTR-5UTR	ENST00000356063	ENST00000530137		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000534672	ENST00000361756		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000534672	ENST00000533380		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000534672	ENST00000393713		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000534672	ENST00000490867		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000534672	ENST00000545854		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000534672	ENST00000530137		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000527898	ENST00000361756		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000527898	ENST00000533380		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000527898	ENST00000393713		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000527898	ENST00000490867		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000527898	ENST00000545854		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000527898	ENST00000530137		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000524713	ENST00000361756		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000524713	ENST00000533380		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000524713	ENST00000393713		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000524713	ENST00000490867		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000524713	ENST00000545854		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000524713	ENST00000530137		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118478414	+	RNF121	chr11	71671796	+
In-frame	ENST00000234453	ENST00000249442		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PLEKHA3	chr2	179345636	+	MTX2	chr2	177161588	+
In-frame	ENST00000234453	ENST00000392529		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PLEKHA3	chr2	179345636	+	MTX2	chr2	177161588	+
5CDS-intron	ENST00000234453	ENST00000443241		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PLEKHA3	chr2	179345636	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000461474	ENST00000249442		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PLEKHA3	chr2	179345636	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000461474	ENST00000392529		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PLEKHA3	chr2	179345636	+	MTX2	chr2	177161588	+
intron-intron	ENST00000461474	ENST00000443241		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	PLEKHA3	chr2	179345636	+	MTX2	chr2	177161588	+
Frame-shit	ENST00000359337	ENST00000383729		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
Frame-shit	ENST00000359337	ENST00000343546		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
5CDS-intron	ENST00000359337	ENST00000609406		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
Frame-shit	ENST00000449103	ENST00000383729		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
Frame-shit	ENST00000449103	ENST00000343546		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
5CDS-intron	ENST00000449103	ENST00000609406		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
intron-3CDS	ENST00000496720	ENST00000383729		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
intron-3CDS	ENST00000496720	ENST00000343546		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
intron-intron	ENST00000496720	ENST00000609406		TCGA	RV	PRAD	TCGA-J9-A52B-01A	PLXNB2	chr22	50713408	-	P4HTM	chr3	49038871	+
intron-3CDS	ENST00000512215	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000512215	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-3CDS	ENST00000394854	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000394854	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-3CDS	ENST00000323055	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000323055	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
Frame-shit	ENST00000394853	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
5CDS-intron	ENST00000394853	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-3CDS	ENST00000507176	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000507176	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-3CDS	ENST00000523694	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000523694	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-3CDS	ENST00000510292	ENST00000374825		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000496118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000580234		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000374831		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000395289		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000443797		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000395287		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000449085		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000438194		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000466744		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000383108		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000547895		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000549843		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000442863		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000552513		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000442219		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000498329		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000488549		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000425201		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000399529		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000399528		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000550142		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000548837		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000399527		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000549236		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000482105		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000414731		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000449118		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000550598		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000479973		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000546777		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000450320		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000547286		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000552587		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000549126		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000553146		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000448067		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000436979		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
intron-intron	ENST00000510292	ENST00000466208		TCGA	RV	PRAD	TCGA-CH-5790-01A	PPP3CA	chr4	101945485	-	BRD2	chr6	32944339	+
In-frame	ENST00000295874	ENST00000398540		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
In-frame	ENST00000295874	ENST00000542259		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000295874	ENST00000497757		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000295874	ENST00000478263		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
In-frame	ENST00000474889	ENST00000398540		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
In-frame	ENST00000474889	ENST00000542259		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000474889	ENST00000497757		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000474889	ENST00000478263		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
3UTR-3CDS	ENST00000495879	ENST00000398540		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
3UTR-3CDS	ENST00000495879	ENST00000542259		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
3UTR-intron	ENST00000495879	ENST00000497757		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
3UTR-intron	ENST00000495879	ENST00000478263		TCGA	RV	PRAD	TCGA-HC-A9TH-01A	PTPRG	chr3	61734656	+	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000272233	ENST00000257497		TCGA	RV	PRAD	TCGA-EJ-7330-01A	RHOB	chr2	20649200	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000272233	ENST00000376911		TCGA	RV	PRAD	TCGA-EJ-7330-01A	RHOB	chr2	20649200	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000272233	ENST00000491192		TCGA	RV	PRAD	TCGA-EJ-7330-01A	RHOB	chr2	20649200	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000296255	ENST00000338110		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000395248		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000575627		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000566897		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000569545		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000563060		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-5UTR	ENST00000296255	ENST00000412304		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000564546		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000564595		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000569798		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
5CDS-intron	ENST00000296255	ENST00000395240		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000338110		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000395248		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000575627		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000566897		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000569545		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000563060		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-5UTR	ENST00000497289	ENST00000412304		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000564546		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000564595		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000569798		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000497289	ENST00000395240		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000338110		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000395248		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000575627		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000566897		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000569545		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000563060		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-5UTR	ENST00000490166	ENST00000412304		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000564546		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000564595		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000569798		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-intron	ENST00000490166	ENST00000395240		TCGA	RV	PRAD	TCGA-CH-5789-01A	RPN1	chr3	128338817	-	ALDOA	chr16	30075973	+
intron-5UTR	ENST00000379933	ENST00000431639		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000316024		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000457584		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000396463		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000534050		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000379938	ENST00000431639		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000379938	ENST00000316024		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000379938	ENST00000457584		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000379938	ENST00000396463		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000379938	ENST00000534050		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000334984	ENST00000431639		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000334984	ENST00000316024		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000334984	ENST00000457584		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000334984	ENST00000396463		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000334984	ENST00000534050		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000349384	ENST00000431639		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000349384	ENST00000316024		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000349384	ENST00000457584		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000349384	ENST00000396463		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000349384	ENST00000534050		TCGA	RV	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108293	+	WRAP53	chr17	7591966	+
Frame-shit	ENST00000541742	ENST00000368069		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
Frame-shit	ENST00000541742	ENST00000241704		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
In-frame	ENST00000490107	ENST00000368069		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
In-frame	ENST00000490107	ENST00000241704		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
In-frame	ENST00000388985	ENST00000368069		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
In-frame	ENST00000388985	ENST00000241704		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
5UTR-3CDS	ENST00000366517	ENST00000368069		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
5UTR-3CDS	ENST00000366517	ENST00000241704		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
intron-3CDS	ENST00000403792	ENST00000368069		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
intron-3CDS	ENST00000403792	ENST00000241704		TCGA	RV	PRAD	TCGA-EJ-5518-01A	SMYD3	chr1	245927343	-	COPA	chr1	160305112	-
5CDS-intron	ENST00000290902	ENST00000304031		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
5CDS-intron	ENST00000290902	ENST00000402541		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
5CDS-intron	ENST00000290902	ENST00000406618		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
5CDS-intron	ENST00000431380	ENST00000304031		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
5CDS-intron	ENST00000431380	ENST00000402541		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
5CDS-intron	ENST00000431380	ENST00000406618		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
intron-intron	ENST00000400762	ENST00000304031		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
intron-intron	ENST00000400762	ENST00000402541		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
intron-intron	ENST00000400762	ENST00000406618		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	SPON2	chr4	1160725	-	HS1BP3	chr2	20822079	-
In-frame	ENST00000369902	ENST00000371531		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000369902	ENST00000224356		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000369902	ENST00000394139		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000369899	ENST00000371531		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000369899	ENST00000224356		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
In-frame	ENST00000369899	ENST00000394139		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000423559	ENST00000371531		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000423559	ENST00000224356		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000423559	ENST00000394139		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
intron-3CDS	ENST00000471000	ENST00000371531		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
intron-3CDS	ENST00000471000	ENST00000224356		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
intron-3CDS	ENST00000471000	ENST00000394139		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SUFU	chr10	104377185	+	CYP26A1	chr10	94835583	+
Frame-shit	ENST00000261716	ENST00000307201		TCGA	RV	PRAD	TCGA-G9-6363-01A	TAOK1	chr17	27829741	+	ABHD15	chr17	27890104	-
Frame-shit	ENST00000536202	ENST00000307201		TCGA	RV	PRAD	TCGA-G9-6363-01A	TAOK1	chr17	27829741	+	ABHD15	chr17	27890104	-
Frame-shit	ENST00000266085	ENST00000503362		TCGA	RV	PRAD	TCGA-HC-7745-01A	TIMP3	chr22	33259030	+	SPCS3	chr4	177243321	+
5CDS-intron	ENST00000266085	ENST00000507001		TCGA	RV	PRAD	TCGA-HC-7745-01A	TIMP3	chr22	33259030	+	SPCS3	chr4	177243321	+
Frame-shit	ENST00000303575	ENST00000261712		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	TMED10	chr14	75614367	-	PSMD11	chr17	30773963	+
Frame-shit	ENST00000303575	ENST00000457654		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	TMED10	chr14	75614367	-	PSMD11	chr17	30773963	+
5UTR-3CDS	ENST00000557670	ENST00000261712		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	TMED10	chr14	75614367	-	PSMD11	chr17	30773963	+
5UTR-3CDS	ENST00000557670	ENST00000457654		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	TMED10	chr14	75614367	-	PSMD11	chr17	30773963	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7328-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6377-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83J-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DI-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000371627	ENST00000446394		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	TNKS2	chr10	93602148	+	HECTD2	chr10	93220184	+
In-frame	ENST00000371627	ENST00000371681		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	TNKS2	chr10	93602148	+	HECTD2	chr10	93220184	+
In-frame	ENST00000371627	ENST00000298068		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	TNKS2	chr10	93602148	+	HECTD2	chr10	93220184	+
5CDS-intron	ENST00000371627	ENST00000536715		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	TNKS2	chr10	93602148	+	HECTD2	chr10	93220184	+
5CDS-intron	ENST00000371627	ENST00000498446		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	TNKS2	chr10	93602148	+	HECTD2	chr10	93220184	+
5CDS-intron	ENST00000371627	ENST00000371667		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	TNKS2	chr10	93602148	+	HECTD2	chr10	93220184	+
3UTR-3CDS	ENST00000570827	ENST00000550831		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
3UTR-3CDS	ENST00000570827	ENST00000355445		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
3UTR-3CDS	ENST00000570827	ENST00000354825		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
3UTR-3CDS	ENST00000570827	ENST00000437003		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
3UTR-3CDS	ENST00000570827	ENST00000552374		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
3UTR-3CDS	ENST00000570827	ENST00000549537		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
3UTR-intron	ENST00000570827	ENST00000552839		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000570475	ENST00000550831		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000570475	ENST00000355445		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000570475	ENST00000354825		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000570475	ENST00000437003		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000570475	ENST00000552374		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000570475	ENST00000549537		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
5CDS-intron	ENST00000570475	ENST00000552839		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000285199	ENST00000550831		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000285199	ENST00000355445		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000285199	ENST00000354825		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000285199	ENST00000437003		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000285199	ENST00000552374		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
In-frame	ENST00000285199	ENST00000549537		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
5CDS-intron	ENST00000285199	ENST00000552839		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	USP43	chr17	9559851	+	TMEM116	chr12	112371834	-
Frame-shit	ENST00000265351	ENST00000287152		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000394362		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000373213		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000373216		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000229913		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000373215		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000538893		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000541946		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000465719		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-3CDS	ENST00000424378	ENST00000287152		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000394362		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000373213		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000373216		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000229913		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000373215		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000538893		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000541946		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000465719		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43540243	-	KIF6	chr6	39314302	-
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000462705	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000393785	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000481632	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000471418	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000357258	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000464560	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000488663	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000474710	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-8468-01A	ZBTB20	chr3	114412375	-	LSAMP	chr3	115571464	-
Frame-shit	ENST00000268489	ENST00000286195		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
Frame-shit	ENST00000268489	ENST00000439802		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
Frame-shit	ENST00000268489	ENST00000439140		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
5CDS-intron	ENST00000268489	ENST00000482942		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
5CDS-intron	ENST00000268489	ENST00000450242		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
Frame-shit	ENST00000397992	ENST00000286195		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
Frame-shit	ENST00000397992	ENST00000439802		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
Frame-shit	ENST00000397992	ENST00000439140		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
5CDS-intron	ENST00000397992	ENST00000482942		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
5CDS-intron	ENST00000397992	ENST00000450242		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
intron-3CDS	ENST00000558842	ENST00000286195		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
intron-3CDS	ENST00000558842	ENST00000439802		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
intron-3CDS	ENST00000558842	ENST00000439140		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
intron-intron	ENST00000558842	ENST00000482942		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
intron-intron	ENST00000558842	ENST00000450242		TCGA	RV	PRAD	TCGA-HC-7232-01A	ZFHX3	chr16	72984368	-	ALS2CR11	chr2	202440049	-
5CDS-intron	ENST00000311275	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000311275	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000311275	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000311275	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000311275	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000311275	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000311275	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000311275	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000360911	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000360911	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000360911	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000360911	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000360911	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000360911	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000360911	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000360911	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000458360	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000458360	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000458360	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000458360	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000458360	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000458360	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000458360	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000458360	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000262975	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000262975	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000262975	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000262975	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000262975	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000262975	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000262975	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000262975	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000471951	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000471951	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000471951	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000471951	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000471951	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000471951	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000471951	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000471951	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000352431	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000352431	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000352431	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000352431	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000352431	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000352431	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000352431	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000352431	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000396281	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000396281	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000396281	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000396281	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000396281	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000396281	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000396281	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000396281	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000446994	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000446994	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000446994	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000446994	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000446994	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000446994	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000446994	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000446994	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536340	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536340	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536340	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536340	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536340	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000536340	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000536340	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000536340	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000355972	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000355972	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000355972	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000355972	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000355972	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000355972	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000355972	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000355972	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000540497	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000540497	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000540497	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000540497	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000540497	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000540497	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000540497	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000540497	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000461685	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000461685	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000461685	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000461685	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000461685	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000461685	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000461685	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000461685	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000372023	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000372023	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000372023	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000372023	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000372023	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000372023	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-5UTR	ENST00000372023	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5CDS-intron	ENST00000372023	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-intron	ENST00000468376	ENST00000500597		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-intron	ENST00000468376	ENST00000407977		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-intron	ENST00000468376	ENST00000583753		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-intron	ENST00000468376	ENST00000584437		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-intron	ENST00000468376	ENST00000577716		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-5UTR	ENST00000468376	ENST00000581868		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-5UTR	ENST00000468376	ENST00000577625		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
intron-intron	ENST00000468376	ENST00000580014		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	ZMYND8	chr20	45976600	-	RNF43	chr17	56448394	-
5UTR-3CDS	ENST00000449707	ENST00000263331		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-3CDS	ENST00000449707	ENST00000541869		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-3CDS	ENST00000449707	ENST00000409894		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-intron	ENST00000449707	ENST00000537335		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-intron	ENST00000449707	ENST00000417433		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-intron	ENST00000449707	ENST00000498054		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-3CDS	ENST00000411696	ENST00000263331		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-3CDS	ENST00000411696	ENST00000541869		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-3CDS	ENST00000411696	ENST00000409894		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-intron	ENST00000411696	ENST00000537335		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-intron	ENST00000411696	ENST00000417433		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
5UTR-intron	ENST00000411696	ENST00000498054		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113306844	+
In-frame	ENST00000394233	ENST00000370192		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000394233	ENST00000474241		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000394233	ENST00000423006		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000394233	ENST00000306031		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
In-frame	ENST00000454898	ENST00000370192		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000454898	ENST00000474241		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000454898	ENST00000423006		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000454898	ENST00000306031		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
In-frame	ENST00000536817	ENST00000370192		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000536817	ENST00000474241		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000536817	ENST00000423006		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000536817	ENST00000306031		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
In-frame	ENST00000370214	ENST00000370192		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000370214	ENST00000474241		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000370214	ENST00000423006		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000370214	ENST00000306031		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
intron-3CDS	ENST00000315713	ENST00000370192		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
intron-intron	ENST00000315713	ENST00000474241		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
intron-intron	ENST00000315713	ENST00000423006		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
intron-intron	ENST00000315713	ENST00000306031		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
3UTR-3CDS	ENST00000484213	ENST00000370192		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
3UTR-intron	ENST00000484213	ENST00000474241		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
3UTR-intron	ENST00000484213	ENST00000423006		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
3UTR-intron	ENST00000484213	ENST00000306031		TCGA	RV	PRAD	TCGA-CH-5764-01A	ABCD3	chr1	94956803	+	DPYD	chr1	97981497	-
5CDS-intron	ENST00000291572	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000291572	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000291572	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398061	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398061	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398061	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000327505	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000327505	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000327505	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398063	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398063	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398063	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398058	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398058	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000398058	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000546158	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000546158	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
5CDS-intron	ENST00000546158	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
3UTR-intron	ENST00000479117	ENST00000357992		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
3UTR-intron	ENST00000479117	ENST00000289703		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
3UTR-intron	ENST00000479117	ENST00000468523		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	AGPAT3	chr21	45391371	+	ELK4	chr1	205569922	-
Frame-shit	ENST00000285518	ENST00000328655		TCGA	RV	PRAD	TCGA-HC-7080-01A	AGPAT5	chr8	6566408	+	PRSS55	chr8	10387017	+
Frame-shit	ENST00000285518	ENST00000522210		TCGA	RV	PRAD	TCGA-HC-7080-01A	AGPAT5	chr8	6566408	+	PRSS55	chr8	10387017	+
intron-3CDS	ENST00000530716	ENST00000328655		TCGA	RV	PRAD	TCGA-HC-7080-01A	AGPAT5	chr8	6566408	+	PRSS55	chr8	10387017	+
intron-3CDS	ENST00000530716	ENST00000522210		TCGA	RV	PRAD	TCGA-HC-7080-01A	AGPAT5	chr8	6566408	+	PRSS55	chr8	10387017	+
In-frame	ENST00000176643	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000176643	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000176643	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000176643	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000176643	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000176643	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000581518	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000581518	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000581518	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000581518	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000581518	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000581518	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000395575	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000395575	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000395575	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000395575	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000395575	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000395575	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000339618	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000339618	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000339618	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000339618	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000339618	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000339618	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000579855	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000579855	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000579855	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000579855	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000579855	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000579855	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000571163	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000571163	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000571163	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
In-frame	ENST00000571163	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000571163	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
5CDS-intron	ENST00000571163	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-3CDS	ENST00000574597	ENST00000320201		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-3CDS	ENST00000574597	ENST00000392428		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-3CDS	ENST00000574597	ENST00000280562		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-3CDS	ENST00000574597	ENST00000542749		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-intron	ENST00000574597	ENST00000546049		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-intron	ENST00000574597	ENST00000451868		TCGA	RV	PRAD	TCGA-G9-6494-01A	ALDH3A2	chr17	19568360	+	PITPNM2	chr12	123477216	-
intron-5UTR	ENST00000298834	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000298834	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000298834	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000298834	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000298834	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000426438	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000426438	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000426438	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000426438	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000426438	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000314845	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000314845	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000314845	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000314845	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000314845	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000533727	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000533727	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000533727	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000533727	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000533727	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000534300	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000534300	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000534300	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000534300	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000534300	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000458649	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000458649	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000458649	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000458649	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000458649	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000528950	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000528950	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000528950	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000528950	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000528950	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000529963	ENST00000526713		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000529963	ENST00000344327		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000529963	ENST00000532133		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000529963	ENST00000360497		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000529963	ENST00000348423		TCGA	RV	PRAD	TCGA-EJ-8470-01A	AMBRA1	chr11	46615378	-	TRPC6	chr11	101375529	-
5UTR-intron	ENST00000272647	ENST00000397703		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-3UTR	ENST00000272647	ENST00000520607		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-3UTR	ENST00000272647	ENST00000356864		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-intron	ENST00000272647	ENST00000540813		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-intron	ENST00000393001	ENST00000397703		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-3UTR	ENST00000393001	ENST00000520607		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-3UTR	ENST00000393001	ENST00000356864		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5UTR-intron	ENST00000393001	ENST00000540813		TCGA	RV	PRAD	TCGA-EJ-5524-01A	AMMECR1L	chr2	128641777	-	TNFRSF10C	chr8	22969233	+
5CDS-intron	ENST00000371120	ENST00000344610		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000371120	ENST00000371059		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000371120	ENST00000371060		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000371120	ENST00000349533		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000371120	ENST00000406510		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000371120	ENST00000462765		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000371120	ENST00000371058		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000344610		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000371059		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000371060		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000349533		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000406510		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000462765		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
5CDS-intron	ENST00000317868	ENST00000371058		TCGA	RV	PRAD	TCGA-G9-6342-01A	ATG4C	chr1	63307218	+	LEPR	chr1	66098835	+
intron-intron	ENST00000553974	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000553974	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000553974	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000553974	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000553974	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000553974	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000553974	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000555474	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000216442	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000555431	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
intron-intron	ENST00000554236	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ATP6V1D	chr14	67804788	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000533988	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533988	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533988	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533988	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533988	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533988	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533988	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524490	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000334736	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000343878	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
3UTR-intron	ENST00000525959	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000533248	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525919	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000524767	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000525038	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000398842		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000398809		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000461841		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000299366		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000224721		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000398788		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5CDS-intron	ENST00000529032	ENST00000475158		TCGA	RV	PRAD	TCGA-G9-6361-01A	C11orf30	chr11	76158052	+	CDH23	chr10	73490226	+
5UTR-3CDS	ENST00000355854	ENST00000492622		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000355854	ENST00000541916		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000355854	ENST00000398316		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000347776	ENST00000492622		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000347776	ENST00000541916		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000347776	ENST00000398316		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000409308	ENST00000492622		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000409308	ENST00000541916		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000409308	ENST00000398316		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000410043	ENST00000492622		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000410043	ENST00000541916		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000410043	ENST00000398316		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000409130	ENST00000492622		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000409130	ENST00000541916		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
intron-3CDS	ENST00000409130	ENST00000398316		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000476943	ENST00000492622		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000476943	ENST00000541916		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
5UTR-3CDS	ENST00000476943	ENST00000398316		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	CAB39L	chr13	49975269	-	FNDC3A	chr13	49746179	+
Frame-shit	ENST00000355854	ENST00000282344		TCGA	RV	PRAD	TCGA-HC-7230-01A	CAB39L	chr13	49906083	-	USP12	chr13	27649525	-
Frame-shit	ENST00000347776	ENST00000282344		TCGA	RV	PRAD	TCGA-HC-7230-01A	CAB39L	chr13	49906083	-	USP12	chr13	27649525	-
Frame-shit	ENST00000409308	ENST00000282344		TCGA	RV	PRAD	TCGA-HC-7230-01A	CAB39L	chr13	49906083	-	USP12	chr13	27649525	-
Frame-shit	ENST00000410043	ENST00000282344		TCGA	RV	PRAD	TCGA-HC-7230-01A	CAB39L	chr13	49906083	-	USP12	chr13	27649525	-
Frame-shit	ENST00000409130	ENST00000282344		TCGA	RV	PRAD	TCGA-HC-7230-01A	CAB39L	chr13	49906083	-	USP12	chr13	27649525	-
intron-3CDS	ENST00000476943	ENST00000282344		TCGA	RV	PRAD	TCGA-HC-7230-01A	CAB39L	chr13	49906083	-	USP12	chr13	27649525	-
Frame-shit	ENST00000216420	ENST00000360586		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
Frame-shit	ENST00000216420	ENST00000420358		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
Frame-shit	ENST00000216420	ENST00000359167		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
Frame-shit	ENST00000216420	ENST00000421192		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
intron-3CDS	ENST00000557512	ENST00000360586		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
intron-3CDS	ENST00000557512	ENST00000420358		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
intron-3CDS	ENST00000557512	ENST00000359167		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
intron-3CDS	ENST00000557512	ENST00000421192		TCGA	RV	PRAD	TCGA-EJ-7328-01A	CGRRF1	chr14	54976781	+	WDHD1	chr14	55451578	-
5UTR-3CDS	ENST00000425346	ENST00000288221		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-intron	ENST00000425346	ENST00000486496		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-3CDS	ENST00000424512	ENST00000288221		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-intron	ENST00000424512	ENST00000486496		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-3CDS	ENST00000232508	ENST00000288221		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-intron	ENST00000232508	ENST00000486496		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-3CDS	ENST00000418577	ENST00000288221		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
5UTR-intron	ENST00000418577	ENST00000486496		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
3UTR-3CDS	ENST00000419046	ENST00000288221		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
3UTR-intron	ENST00000419046	ENST00000486496		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388415	+	ERC2	chr3	56053059	-
Frame-shit	ENST00000399151	ENST00000394235		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
Frame-shit	ENST00000399151	ENST00000379549		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
Frame-shit	ENST00000399151	ENST00000379550		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
Frame-shit	ENST00000399151	ENST00000265495		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
Frame-shit	ENST00000399151	ENST00000358635		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
Frame-shit	ENST00000399151	ENST00000510408		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
5CDS-intron	ENST00000399151	ENST00000515489		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-3CDS	ENST00000492760	ENST00000394235		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-3CDS	ENST00000492760	ENST00000379549		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-3CDS	ENST00000492760	ENST00000379550		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-3CDS	ENST00000492760	ENST00000265495		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-3CDS	ENST00000492760	ENST00000358635		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-3CDS	ENST00000492760	ENST00000510408		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
intron-intron	ENST00000492760	ENST00000515489		TCGA	RV	PRAD	TCGA-EJ-5525-01A	DOPEY2	chr21	37572799	+	ELF2	chr4	139983211	-
Frame-shit	ENST00000398665	ENST00000252622		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	DOT1L	chr19	2180755	+	LSM7	chr19	2328476	-
5CDS-intron	ENST00000398665	ENST00000589532		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	DOT1L	chr19	2180755	+	LSM7	chr19	2328476	-
intron-3CDS	ENST00000608122	ENST00000252622		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	DOT1L	chr19	2180755	+	LSM7	chr19	2328476	-
intron-intron	ENST00000608122	ENST00000589532		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	DOT1L	chr19	2180755	+	LSM7	chr19	2328476	-
5UTR-3CDS	ENST00000495963	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5UTR-intron	ENST00000495963	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
In-frame	ENST00000378284	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5CDS-intron	ENST00000378284	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
In-frame	ENST00000378272	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5CDS-intron	ENST00000378272	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
In-frame	ENST00000242827	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5CDS-intron	ENST00000242827	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
In-frame	ENST00000378270	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5CDS-intron	ENST00000378270	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
In-frame	ENST00000378282	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5CDS-intron	ENST00000378282	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
In-frame	ENST00000378268	ENST00000382172		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
5CDS-intron	ENST00000378268	ENST00000469167		TCGA	RV	PRAD	TCGA-HC-7233-01A	EBPL	chr13	50265390	-	MIPEP	chr13	24334356	-
intron-3CDS	ENST00000441293	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000441293	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000441293	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000441293	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000441293	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000441293	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000314728	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000314728	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000314728	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000314728	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000314728	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000314728	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000347697	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000347697	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000347697	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000347697	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000347697	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000347697	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000395618	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000395618	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000395618	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000395618	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000395618	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000395618	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000575595	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000575595	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-3CDS	ENST00000575595	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000575595	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000575595	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5UTR-intron	ENST00000575595	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000395620	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000395620	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000395620	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000395620	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000395620	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000395620	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000395626	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000395626	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000395626	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000395626	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000395626	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000395626	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000571254	ENST00000317977		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000571254	ENST00000395642		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-3CDS	ENST00000571254	ENST00000395647		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000571254	ENST00000417251		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000571254	ENST00000395643		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
intron-intron	ENST00000571254	ENST00000395645		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	EPN2	chr17	19140844	+	SLC5A10	chr17	18916723	+
5CDS-intron	ENST00000267101	ENST00000250448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
5CDS-intron	ENST00000267101	ENST00000540786		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
5CDS-intron	ENST00000267101	ENST00000545425		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000450146	ENST00000250448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000450146	ENST00000540786		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000450146	ENST00000545425		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000415288	ENST00000250448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000415288	ENST00000540786		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000415288	ENST00000545425		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000553131	ENST00000250448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000553131	ENST00000540786		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000553131	ENST00000545425		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000411731	ENST00000250448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000411731	ENST00000540786		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
intron-intron	ENST00000411731	ENST00000545425		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
5CDS-intron	ENST00000549832	ENST00000250448		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
5CDS-intron	ENST00000549832	ENST00000540786		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
5CDS-intron	ENST00000549832	ENST00000545425		TCGA	RV	PRAD	TCGA-KK-A6E4-01A	ERBB3	chr12	56497283	+	FOXA1	chr14	38069245	-
Frame-shit	ENST00000428826	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
intron-3CDS	ENST00000415827	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
In-frame	ENST00000435174	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
In-frame	ENST00000592743	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
Frame-shit	ENST00000585893	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
In-frame	ENST00000590078	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
intron-3CDS	ENST00000590783	ENST00000233813		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	EZH1	chr17	40879653	-	IGFBP5	chr2	217543802	-
In-frame	ENST00000341285	ENST00000330852		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
In-frame	ENST00000341285	ENST00000288723		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
In-frame	ENST00000341285	ENST00000338176		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
In-frame	ENST00000412094	ENST00000330852		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
In-frame	ENST00000412094	ENST00000288723		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
In-frame	ENST00000412094	ENST00000338176		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
5UTR-3CDS	ENST00000382358	ENST00000330852		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
5UTR-3CDS	ENST00000382358	ENST00000288723		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
5UTR-3CDS	ENST00000382358	ENST00000338176		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
intron-3CDS	ENST00000514541	ENST00000330852		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
intron-3CDS	ENST00000514541	ENST00000288723		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
intron-3CDS	ENST00000514541	ENST00000338176		TCGA	RV	PRAD	TCGA-M7-A724-01A	FBXL5	chr4	15656827	-	RAB28	chr4	13481150	-
In-frame	ENST00000307363	ENST00000274710		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	GLB1	chr3	33094983	-	PSD2	chr5	139215308	+
Frame-shit	ENST00000399402	ENST00000274710		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	GLB1	chr3	33094983	-	PSD2	chr5	139215308	+
In-frame	ENST00000445488	ENST00000274710		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	GLB1	chr3	33094983	-	PSD2	chr5	139215308	+
In-frame	ENST00000307377	ENST00000274710		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	GLB1	chr3	33094983	-	PSD2	chr5	139215308	+
intron-3CDS	ENST00000497796	ENST00000274710		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	GLB1	chr3	33094983	-	PSD2	chr5	139215308	+
intron-3CDS	ENST00000530927	ENST00000511642		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000415497		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000372988		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000510503		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000511686		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000372991		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000372987		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000530927	ENST00000414200		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
In-frame	ENST00000380815	ENST00000511642		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000415497		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000372988		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000510503		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000511686		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000372991		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000372987		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
5CDS-5UTR	ENST00000380815	ENST00000414200		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-3CDS	ENST00000467288	ENST00000511642		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000415497		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000372988		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000510503		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000511686		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000372991		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000372987		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
intron-5UTR	ENST00000467288	ENST00000414200		TCGA	RV	PRAD	TCGA-G9-6353-01A	GMDS	chr6	2245555	-	CCND3	chr6	41905132	-
Frame-shit	ENST00000253669	ENST00000221566		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	HAUS8	chr19	17184084	-	SGTA	chr19	2759292	-
5CDS-intron	ENST00000253669	ENST00000586711		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	HAUS8	chr19	17184084	-	SGTA	chr19	2759292	-
Frame-shit	ENST00000448593	ENST00000221566		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	HAUS8	chr19	17184084	-	SGTA	chr19	2759292	-
5CDS-intron	ENST00000448593	ENST00000586711		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	HAUS8	chr19	17184084	-	SGTA	chr19	2759292	-
5UTR-3CDS	ENST00000593360	ENST00000221566		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	HAUS8	chr19	17184084	-	SGTA	chr19	2759292	-
5UTR-intron	ENST00000593360	ENST00000586711		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	HAUS8	chr19	17184084	-	SGTA	chr19	2759292	-
intron-3CDS	ENST00000373583	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373583	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373583	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373583	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373583	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373573	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373573	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373573	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373573	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373573	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373589	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373589	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373589	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373589	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373589	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000429103	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000429103	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000429103	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000429103	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000429103	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373571	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373571	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373571	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373571	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373571	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000439122	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000439122	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000439122	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000439122	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000439122	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373560	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373560	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373560	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373560	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373560	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373559	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373559	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373559	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373559	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373559	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373561	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373561	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373561	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373561	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373561	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000478743	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000478743	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000478743	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000478743	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000478743	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373556	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373556	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373556	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373556	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
Frame-shit	ENST00000373556	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373554	ENST00000373542		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373554	ENST00000373545		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373554	ENST00000541944		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373554	ENST00000339490		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
intron-3CDS	ENST00000373554	ENST00000373539		TCGA	RV	PRAD	TCGA-G9-7523-01A	HDAC8	chrX	71787739	-	PHKA1	chrX	71804152	-
5UTR-3CDS	ENST00000321599	ENST00000359051		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000321599	ENST00000336307		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000321599	ENST00000415204		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000321599	ENST00000450982		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000321599	ENST00000513170		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000395238	ENST00000359051		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000395238	ENST00000336307		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000395238	ENST00000415204		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000395238	ENST00000450982		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000395238	ENST00000513170		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000468463	ENST00000359051		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000468463	ENST00000336307		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000468463	ENST00000415204		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000468463	ENST00000450982		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000468463	ENST00000513170		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000460540	ENST00000359051		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000460540	ENST00000336307		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000460540	ENST00000415204		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000460540	ENST00000450982		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000460540	ENST00000513170		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000498149	ENST00000359051		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000498149	ENST00000336307		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000498149	ENST00000415204		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000498149	ENST00000450982		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
intron-3CDS	ENST00000498149	ENST00000513170		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IP6K1	chr3	49823787	-	HYAL3	chr3	50330946	-
5UTR-3CDS	ENST00000568047	ENST00000296589		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5UTR-3CDS	ENST00000568047	ENST00000342059		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5UTR-3CDS	ENST00000568047	ENST00000382102		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5UTR-intron	ENST00000568047	ENST00000509381		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5UTR-intron	ENST00000568047	ENST00000345083		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
Frame-shit	ENST00000320640	ENST00000296589		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
Frame-shit	ENST00000320640	ENST00000342059		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
Frame-shit	ENST00000320640	ENST00000382102		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5CDS-intron	ENST00000320640	ENST00000509381		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5CDS-intron	ENST00000320640	ENST00000345083		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
In-frame	ENST00000544001	ENST00000296589		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
In-frame	ENST00000544001	ENST00000342059		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
In-frame	ENST00000544001	ENST00000382102		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5CDS-intron	ENST00000544001	ENST00000509381		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5CDS-intron	ENST00000544001	ENST00000345083		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	ITFG1	chr16	47345151	-	SLC45A2	chr5	33964121	-
5CDS-intron	ENST00000353170	ENST00000569649		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-intron	ENST00000353170	ENST00000326043		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-3UTR	ENST00000353170	ENST00000393350		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-intron	ENST00000347925	ENST00000569649		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-intron	ENST00000347925	ENST00000326043		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-3UTR	ENST00000347925	ENST00000393350		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
intron-intron	ENST00000566349	ENST00000569649		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
intron-intron	ENST00000566349	ENST00000326043		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
intron-3UTR	ENST00000566349	ENST00000393350		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-intron	ENST00000270583	ENST00000569649		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-intron	ENST00000270583	ENST00000326043		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-3UTR	ENST00000270583	ENST00000393350		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KLHDC4	chr16	87799398	-	MAF	chr16	79628450	-
5CDS-intron	ENST00000325321	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000325321	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000325321	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000325321	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000325321	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000325321	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000391810	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000391810	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000391810	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000391810	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000391810	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000391810	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000358049	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000358049	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000358049	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000358049	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000358049	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000358049	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000597509	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000597509	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000597509	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000597509	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000597509	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
intron-intron	ENST00000597509	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-7782-01A	KLK2	chr19	51383822	+	STAT6	chr12	57496773	-
In-frame	ENST00000330909	ENST00000493112		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000330909	ENST00000307227		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
5CDS-intron	ENST00000330909	ENST00000492795		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000402939	ENST00000493112		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000402939	ENST00000307227		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
5CDS-intron	ENST00000402939	ENST00000492795		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000483466	ENST00000493112		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000483466	ENST00000307227		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
5CDS-intron	ENST00000483466	ENST00000492795		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000497477	ENST00000493112		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
In-frame	ENST00000497477	ENST00000307227		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
5CDS-intron	ENST00000497477	ENST00000492795		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
intron-3CDS	ENST00000470990	ENST00000493112		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
intron-3CDS	ENST00000470990	ENST00000307227		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
intron-intron	ENST00000470990	ENST00000492795		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAGI1	chr3	66023671	-	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000267079	ENST00000257868		TCGA	RV	PRAD	TCGA-HC-8264-01B	MAP3K12	chr12	53893211	-	GDF11	chr12	56142370	+
5UTR-3CDS	ENST00000547488	ENST00000257868		TCGA	RV	PRAD	TCGA-HC-8264-01B	MAP3K12	chr12	53893211	-	GDF11	chr12	56142370	+
intron-3CDS	ENST00000547035	ENST00000257868		TCGA	RV	PRAD	TCGA-HC-8264-01B	MAP3K12	chr12	53893211	-	GDF11	chr12	56142370	+
5UTR-3CDS	ENST00000547151	ENST00000257868		TCGA	RV	PRAD	TCGA-HC-8264-01B	MAP3K12	chr12	53893211	-	GDF11	chr12	56142370	+
In-frame	ENST00000354570	ENST00000359015		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-5UTR	ENST00000354570	ENST00000355845		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-intron	ENST00000354570	ENST00000463140		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
In-frame	ENST00000454590	ENST00000359015		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-5UTR	ENST00000454590	ENST00000355845		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-intron	ENST00000454590	ENST00000463140		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
In-frame	ENST00000544465	ENST00000359015		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-5UTR	ENST00000544465	ENST00000355845		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-intron	ENST00000544465	ENST00000463140		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
In-frame	ENST00000438100	ENST00000359015		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-5UTR	ENST00000438100	ENST00000355845		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-intron	ENST00000438100	ENST00000463140		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
Frame-shit	ENST00000432797	ENST00000359015		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-5UTR	ENST00000432797	ENST00000355845		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
5CDS-intron	ENST00000432797	ENST00000463140		TCGA	RV	PRAD	TCGA-HC-A632-01A	MAP7	chr6	136677830	-	MAP3K5	chr6	136960776	-
In-frame	ENST00000335681	ENST00000263863		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
In-frame	ENST00000335681	ENST00000524600		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000335681	ENST00000533041		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000335681	ENST00000409696		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
In-frame	ENST00000542504	ENST00000263863		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
In-frame	ENST00000542504	ENST00000524600		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000542504	ENST00000533041		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
5CDS-3UTR	ENST00000542504	ENST00000409696		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
3UTR-3CDS	ENST00000486017	ENST00000263863		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
3UTR-3CDS	ENST00000486017	ENST00000524600		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
3UTR-3UTR	ENST00000486017	ENST00000533041		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
3UTR-3UTR	ENST00000486017	ENST00000409696		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	NPAS2	chr2	101565942	+	GNLY	chr2	85922443	+
5CDS-intron	ENST00000331483	ENST00000354817		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000331483	ENST00000527202		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000331483	ENST00000532502		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000576390	ENST00000354817		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000576390	ENST00000527202		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000576390	ENST00000532502		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000439918	ENST00000354817		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000439918	ENST00000527202		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000439918	ENST00000532502		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000472244	ENST00000354817		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000472244	ENST00000527202		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-intron	ENST00000472244	ENST00000532502		TCGA	RV	PRAD	TCGA-HC-7210-01A	P4HB	chr17	79801037	-	FAR1	chr11	13744912	+
intron-3CDS	ENST00000331483	ENST00000316059		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	P4HB	chr17	79801042	-	ZFP91	chr11	58380235	+
intron-3CDS	ENST00000576390	ENST00000316059		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	P4HB	chr17	79801042	-	ZFP91	chr11	58380235	+
intron-3CDS	ENST00000439918	ENST00000316059		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	P4HB	chr17	79801042	-	ZFP91	chr11	58380235	+
intron-3CDS	ENST00000472244	ENST00000316059		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	P4HB	chr17	79801042	-	ZFP91	chr11	58380235	+
In-frame	ENST00000299468	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
In-frame	ENST00000299468	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000299468	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-5UTR	ENST00000299468	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000299468	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000299468	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
In-frame	ENST00000369758	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
In-frame	ENST00000369758	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000369758	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-5UTR	ENST00000369758	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000369758	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000369758	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-3CDS	ENST00000609372	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-3CDS	ENST00000609372	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-intron	ENST00000609372	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-5UTR	ENST00000609372	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-intron	ENST00000609372	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-intron	ENST00000609372	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
In-frame	ENST00000308824	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
In-frame	ENST00000308824	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000308824	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-5UTR	ENST00000308824	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000308824	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
5CDS-intron	ENST00000308824	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-3CDS	ENST00000266078	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-3CDS	ENST00000266078	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-intron	ENST00000266078	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-5UTR	ENST00000266078	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-intron	ENST00000266078	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-intron	ENST00000266078	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7080-01A	PCMTD2	chr20	62891625	+	MACROD2	chr20	15210586	+
intron-3CDS	ENST00000340635	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000340635	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000340635	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000360047	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000360047	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000360047	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000507116	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000507116	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000507116	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
5UTR-3CDS	ENST00000502484	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
5UTR-3CDS	ENST00000502484	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
5UTR-intron	ENST00000502484	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000546160	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000546160	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000546160	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000502575	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000502575	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000502575	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000358923	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000358923	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000358923	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000503258	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000503258	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000503258	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000405755	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000405755	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000405755	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000317118	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000317118	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000317118	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000503947	ENST00000376131		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-3CDS	ENST00000503947	ENST00000376143		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000503947	ENST00000468052		TCGA	RV	PRAD	TCGA-EJ-5497-01A	PDE4D	chr5	59783769	-	FGF14	chr13	102379160	-
intron-intron	ENST00000400520	ENST00000348697		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
intron-intron	ENST00000400520	ENST00000402984		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
intron-intron	ENST00000400520	ENST00000262722		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
intron-intron	ENST00000400520	ENST00000327858		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
intron-intron	ENST00000400520	ENST00000442170		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
intron-intron	ENST00000400520	ENST00000340923		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
intron-intron	ENST00000400520	ENST00000476366		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000348697		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000402984		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000262722		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000327858		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000442170		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000340923		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000496748	ENST00000476366		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000348697		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000402984		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000262722		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000327858		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000442170		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000340923		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-intron	ENST00000375111	ENST00000476366		TCGA	RV	PRAD	TCGA-KK-A7AQ-01A	PLA2G2A	chr1	20301931	-	FBLN1	chr22	45914462	+
5CDS-3UTR	ENST00000367866	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000367866	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000367866	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000367866	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000367866	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000452019	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000452019	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000452019	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000452019	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000452019	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000429375	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000429375	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000429375	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000429375	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5CDS-3UTR	ENST00000429375	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
3UTR-3UTR	ENST00000367865	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
3UTR-3UTR	ENST00000367865	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
3UTR-3UTR	ENST00000367865	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
3UTR-3UTR	ENST00000367865	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
3UTR-3UTR	ENST00000367865	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000541643	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000541643	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000541643	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000541643	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000541643	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000420254	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000420254	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000420254	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000420254	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
5UTR-3UTR	ENST00000420254	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
intron-3UTR	ENST00000367862	ENST00000492220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
intron-3UTR	ENST00000367862	ENST00000401000		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
intron-3UTR	ENST00000367862	ENST00000539519		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
intron-3UTR	ENST00000367862	ENST00000369067		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
intron-3UTR	ENST00000367862	ENST00000369068		TCGA	RV	PRAD	TCGA-EJ-5518-01A	POU2F1	chr1	167190195	+	RPRD2	chr1	150413399	+
intron-3CDS	ENST00000466266	ENST00000341700		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
intron-intron	ENST00000466266	ENST00000464095		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
5UTR-3CDS	ENST00000428286	ENST00000341700		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
5UTR-intron	ENST00000428286	ENST00000464095		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
In-frame	ENST00000376718	ENST00000341700		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
5CDS-intron	ENST00000376718	ENST00000464095		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
intron-3CDS	ENST00000443509	ENST00000341700		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
intron-intron	ENST00000443509	ENST00000464095		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
intron-3CDS	ENST00000223609	ENST00000341700		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
intron-intron	ENST00000223609	ENST00000464095		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
In-frame	ENST00000376713	ENST00000341700		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
5CDS-intron	ENST00000376713	ENST00000464095		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	PRUNE2	chr9	79438548	-	GNA14	chr9	80049438	-
5CDS-5UTR	ENST00000338086	ENST00000381323		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000338086	ENST00000355549		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000338086	ENST00000406434		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000319801	ENST00000381323		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000319801	ENST00000355549		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000319801	ENST00000406434		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000361078	ENST00000381323		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000361078	ENST00000355549		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000361078	ENST00000406434		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000536417	ENST00000381323		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000536417	ENST00000355549		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000536417	ENST00000406434		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000403432	ENST00000381323		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000403432	ENST00000355549		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-5UTR	ENST00000403432	ENST00000406434		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
intron-5UTR	ENST00000420234	ENST00000381323		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
intron-5UTR	ENST00000420234	ENST00000355549		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
intron-5UTR	ENST00000420234	ENST00000406434		TCGA	RV	PRAD	TCGA-CH-5794-01A	PUM2	chr2	20494137	-	FAM49A	chr2	16769397	-
5CDS-intron	ENST00000265062	ENST00000513761		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265062	ENST00000347613		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265062	ENST00000360642		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265062	ENST00000504131		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265062	ENST00000506924		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000482525	ENST00000513761		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000482525	ENST00000347613		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000482525	ENST00000360642		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000482525	ENST00000504131		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000482525	ENST00000506924		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485280	ENST00000513761		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485280	ENST00000347613		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485280	ENST00000360642		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485280	ENST00000504131		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000485280	ENST00000506924		TCGA	RV	PRAD	TCGA-CH-5794-01A	RAB7A	chr3	128533639	+	CLCN3	chr4	170623929	+
5UTR-3CDS	ENST00000251849	ENST00000389617		TCGA	RV	PRAD	TCGA-EJ-5497-01A	RAF1	chr3	12705312	-	GXYLT2	chr3	72957518	+
5UTR-3CDS	ENST00000442415	ENST00000389617		TCGA	RV	PRAD	TCGA-EJ-5497-01A	RAF1	chr3	12705312	-	GXYLT2	chr3	72957518	+
intron-3CDS	ENST00000534997	ENST00000389617		TCGA	RV	PRAD	TCGA-EJ-5497-01A	RAF1	chr3	12705312	-	GXYLT2	chr3	72957518	+
5UTR-3CDS	ENST00000542177	ENST00000389617		TCGA	RV	PRAD	TCGA-EJ-5497-01A	RAF1	chr3	12705312	-	GXYLT2	chr3	72957518	+
3UTR-intron	ENST00000491306	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000491306	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000491306	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000491306	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000491306	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000600880	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000600880	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000600880	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000600880	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000600880	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000446558	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000446558	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000446558	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000446558	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000446558	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000456586	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000456586	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000456586	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000456586	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000456586	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000598925	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000598925	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000598925	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000598925	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000598925	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427280	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427280	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427280	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427280	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000427280	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000441179	ENST00000322776		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000441179	ENST00000532303		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000441179	ENST00000529927		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000441179	ENST00000415352		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000441179	ENST00000526169		TCGA	RV	PRAD	TCGA-KC-A4BL-01A	RPL37A	chr2	217366186	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000393078	ENST00000394332		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393078	ENST00000394333		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-5UTR	ENST00000393078	ENST00000479035		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393078	ENST00000245857		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393078	ENST00000577407		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000485588	ENST00000394332		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000485588	ENST00000394333		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-5UTR	ENST00000485588	ENST00000479035		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000485588	ENST00000245857		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000485588	ENST00000577407		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393080	ENST00000394332		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393080	ENST00000394333		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-5UTR	ENST00000393080	ENST00000479035		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393080	ENST00000245857		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000393080	ENST00000577407		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000467132	ENST00000394332		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000467132	ENST00000394333		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-5UTR	ENST00000467132	ENST00000479035		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000467132	ENST00000245857		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000467132	ENST00000577407		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000482740	ENST00000394332		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000482740	ENST00000394333		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-5UTR	ENST00000482740	ENST00000479035		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000482740	ENST00000245857		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
intron-intron	ENST00000482740	ENST00000577407		TCGA	RV	PRAD	TCGA-HC-A6AO-01A	SERPINA3	chr14	95090983	+	RPL23	chr17	37009988	-
In-frame	ENST00000460934	ENST00000263593		TCGA	RV	PRAD	TCGA-CH-5789-01A	SLC45A3	chr1	205626979	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000460934	ENST00000545756		TCGA	RV	PRAD	TCGA-CH-5789-01A	SLC45A3	chr1	205626979	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000460934	ENST00000525730		TCGA	RV	PRAD	TCGA-CH-5789-01A	SLC45A3	chr1	205626979	-	SIAE	chr11	124543777	-
In-frame	ENST00000367145	ENST00000263593		TCGA	RV	PRAD	TCGA-CH-5789-01A	SLC45A3	chr1	205626979	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000367145	ENST00000545756		TCGA	RV	PRAD	TCGA-CH-5789-01A	SLC45A3	chr1	205626979	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000367145	ENST00000525730		TCGA	RV	PRAD	TCGA-CH-5789-01A	SLC45A3	chr1	205626979	-	SIAE	chr11	124543777	-
5CDS-5UTR	ENST00000316999	ENST00000369582		TCGA	RV	PRAD	TCGA-CH-5737-01A	SMAP1	chr6	71483128	+	CGA	chr6	87797925	-
5CDS-5UTR	ENST00000370452	ENST00000369582		TCGA	RV	PRAD	TCGA-CH-5737-01A	SMAP1	chr6	71483128	+	CGA	chr6	87797925	-
5CDS-5UTR	ENST00000370455	ENST00000369582		TCGA	RV	PRAD	TCGA-CH-5737-01A	SMAP1	chr6	71483128	+	CGA	chr6	87797925	-
3UTR-5UTR	ENST00000422334	ENST00000369582		TCGA	RV	PRAD	TCGA-CH-5737-01A	SMAP1	chr6	71483128	+	CGA	chr6	87797925	-
intron-intron	ENST00000448662	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000448662	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000448662	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000431808	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000431808	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000431808	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000284776	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000284776	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000284776	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000437304	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000437304	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000437304	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000319471	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000319471	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000319471	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
5UTR-intron	ENST00000449407	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
5UTR-intron	ENST00000449407	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
5UTR-intron	ENST00000449407	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000355634	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000355634	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000355634	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
5UTR-intron	ENST00000393528	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
5UTR-intron	ENST00000393528	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
5UTR-intron	ENST00000393528	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000418609	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000418609	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000418609	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000498125	ENST00000357992		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000498125	ENST00000289703		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-intron	ENST00000498125	ENST00000468523		TCGA	RV	PRAD	TCGA-J4-8198-01A	SORBS2	chr4	186732818	-	ELK4	chr1	205567777	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67L-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67T-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000233143	ENST00000548898		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000552067		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000420846		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000548160		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000546939		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000552692		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-5UTR	ENST00000233143	ENST00000549117		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000257857		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000552754		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
5CDS-intron	ENST00000233143	ENST00000550776		TCGA	RV	PRAD	TCGA-G9-7521-01A	TMSB10	chr2	85133795	+	CD63	chr12	56123444	-
intron-5UTR	ENST00000413465	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000413465	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000413465	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000413465	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000413465	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-intron	ENST00000413465	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-intron	ENST00000413465	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000359597	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000359597	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000359597	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000359597	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000359597	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000359597	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000359597	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000269305	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000269305	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000269305	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000269305	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000269305	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000269305	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000269305	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000455263	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000455263	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000455263	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000455263	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000455263	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000455263	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000455263	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000420246	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000420246	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000420246	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000420246	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000420246	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000420246	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000420246	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000445888	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000445888	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000445888	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000445888	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-5UTR	ENST00000445888	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000445888	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
5CDS-intron	ENST00000445888	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000574684	ENST00000270517		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000574684	ENST00000588998		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000574684	ENST00000252440		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000574684	ENST00000417981		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-5UTR	ENST00000574684	ENST00000591104		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-intron	ENST00000574684	ENST00000592312		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
intron-intron	ENST00000574684	ENST00000591352		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	TP53	chr17	7576853	-	ECSIT	chr19	11630008	-
In-frame	ENST00000271469	ENST00000369308		TCGA	RV	PRAD	TCGA-VP-A87B-01A	UAP1	chr1	162536138	+	LIX1L	chr1	145487304	+
In-frame	ENST00000367926	ENST00000369308		TCGA	RV	PRAD	TCGA-VP-A87B-01A	UAP1	chr1	162536138	+	LIX1L	chr1	145487304	+
intron-3CDS	ENST00000476240	ENST00000369308		TCGA	RV	PRAD	TCGA-VP-A87B-01A	UAP1	chr1	162536138	+	LIX1L	chr1	145487304	+
In-frame	ENST00000367924	ENST00000369308		TCGA	RV	PRAD	TCGA-VP-A87B-01A	UAP1	chr1	162536138	+	LIX1L	chr1	145487304	+
In-frame	ENST00000367925	ENST00000369308		TCGA	RV	PRAD	TCGA-VP-A87B-01A	UAP1	chr1	162536138	+	LIX1L	chr1	145487304	+
5CDS-intron	ENST00000261637	ENST00000550067		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	UTP20	chr12	101713413	+	SCYL2	chr12	100727944	+
5CDS-intron	ENST00000261637	ENST00000360820		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	UTP20	chr12	101713413	+	SCYL2	chr12	100727944	+
5UTR-3CDS	ENST00000462705	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000462705	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000462705	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-intron	ENST00000462705	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-3CDS	ENST00000393785	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000393785	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000393785	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-intron	ENST00000393785	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-3CDS	ENST00000481632	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000481632	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000481632	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-intron	ENST00000481632	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-3CDS	ENST00000471418	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000471418	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000471418	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-intron	ENST00000471418	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-3CDS	ENST00000357258	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000357258	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000357258	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-intron	ENST00000357258	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-3CDS	ENST00000464560	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000464560	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-5UTR	ENST00000464560	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
5UTR-intron	ENST00000464560	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-3CDS	ENST00000488663	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000488663	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000488663	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-intron	ENST00000488663	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-3CDS	ENST00000474710	ENST00000481065		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000474710	ENST00000486257		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-5UTR	ENST00000474710	ENST00000383671		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
intron-intron	ENST00000474710	ENST00000496848		TCGA	RV	PRAD	TCGA-TP-A8TV-01A	ZBTB20	chr3	114219199	-	TIGIT	chr3	114012847	+
In-frame	ENST00000268489	ENST00000315769		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
In-frame	ENST00000268489	ENST00000297737		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
5CDS-intron	ENST00000268489	ENST00000523823		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
In-frame	ENST00000397992	ENST00000315769		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
In-frame	ENST00000397992	ENST00000297737		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
5CDS-intron	ENST00000397992	ENST00000523823		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
intron-3CDS	ENST00000558842	ENST00000315769		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
intron-3CDS	ENST00000558842	ENST00000297737		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
intron-intron	ENST00000558842	ENST00000523823		TCGA	RV	PRAD	TCGA-G9-7522-01A	ZFHX3	chr16	72845476	-	ZMAT4	chr8	40438780	-
Frame-shit	ENST00000331925	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331925	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331925	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331925	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331925	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000573283	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000573283	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000573283	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000573283	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000573283	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000575842	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575842	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575842	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575842	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575842	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000575087	ENST00000280326		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575087	ENST00000503026		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575087	ENST00000515390		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575087	ENST00000515676		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
intron-intron	ENST00000575087	ENST00000506600		TCGA	RV	PRAD	TCGA-G9-6371-01A	ACTG1	chr17	79476999	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000369905	ENST00000224950		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
In-frame	ENST00000369905	ENST00000369764		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5CDS-5UTR	ENST00000369905	ENST00000466828		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000470322	ENST00000224950		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
intron-3CDS	ENST00000470322	ENST00000369764		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
intron-5UTR	ENST00000470322	ENST00000466828		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
Frame-shit	ENST00000487599	ENST00000224950		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
In-frame	ENST00000487599	ENST00000369764		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5CDS-5UTR	ENST00000487599	ENST00000466828		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5UTR-3CDS	ENST00000545684	ENST00000224950		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5UTR-3CDS	ENST00000545684	ENST00000369764		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5UTR-5UTR	ENST00000545684	ENST00000466828		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5UTR-3CDS	ENST00000446605	ENST00000224950		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5UTR-3CDS	ENST00000446605	ENST00000369764		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5UTR-5UTR	ENST00000446605	ENST00000466828		TCGA	RV	PRAD	TCGA-VP-A87K-01A	ACTR1A	chr10	104262357	-	OBFC1	chr10	105642599	-
5CDS-intron	ENST00000268070	ENST00000315289		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
5CDS-intron	ENST00000268070	ENST00000395265		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
5CDS-intron	ENST00000268070	ENST00000373789		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
5CDS-intron	ENST00000268070	ENST00000395260		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
intron-intron	ENST00000559976	ENST00000315289		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
intron-intron	ENST00000559976	ENST00000395265		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
intron-intron	ENST00000559976	ENST00000373789		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
intron-intron	ENST00000559976	ENST00000395260		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ADAMTS17	chr15	100537590	-	RTKN2	chr10	64022580	-
5CDS-intron	ENST00000338110	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000338110	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000395248	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000575627	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000566897	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569545	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000563060	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000412304	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000564546	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000564595	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000569798	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000322776		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000532303		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000529927		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000415352		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000395240	ENST00000526169		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	ALDOA	chr16	30081734	+	NDUFV1	chr11	67375697	+
5CDS-5UTR	ENST00000368149	ENST00000368250		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
5CDS-5UTR	ENST00000368149	ENST00000368248		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
5CDS-5UTR	ENST00000368149	ENST00000543064		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
5CDS-intron	ENST00000368149	ENST00000537166		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
intron-5UTR	ENST00000463225	ENST00000368250		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
intron-5UTR	ENST00000463225	ENST00000368248		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
intron-5UTR	ENST00000463225	ENST00000543064		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
intron-intron	ENST00000463225	ENST00000537166		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	ARHGAP18	chr6	130031169	-	THEMIS	chr6	128222226	-
5CDS-intron	ENST00000421419	ENST00000524958		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000421419	ENST00000354588		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000421419	ENST00000431002		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000421419	ENST00000532208		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000421419	ENST00000525675		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000377264	ENST00000524958		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000377264	ENST00000354588		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000377264	ENST00000431002		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000377264	ENST00000532208		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
5CDS-intron	ENST00000377264	ENST00000525675		TCGA	RV	PRAD	TCGA-2A-AAYF-01A	ATG2A	chr11	64663934	-	C11orf48	chr11	62437275	-
In-frame	ENST00000339594	ENST00000336517		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
In-frame	ENST00000339594	ENST00000394857		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
In-frame	ENST00000339594	ENST00000416245		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
5CDS-3UTR	ENST00000339594	ENST00000467555		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
In-frame	ENST00000404251	ENST00000336517		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
In-frame	ENST00000404251	ENST00000394857		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
In-frame	ENST00000404251	ENST00000416245		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
5CDS-3UTR	ENST00000404251	ENST00000467555		TCGA	RV	PRAD	TCGA-HC-8265-01A	BAZ1B	chr7	72873866	-	ZP3	chr7	76069567	+
intron-3CDS	ENST00000314100	ENST00000318008		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000314100	ENST00000433206		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000314100	ENST00000435347		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
5UTR-3CDS	ENST00000481247	ENST00000318008		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
5UTR-5UTR	ENST00000481247	ENST00000433206		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
5UTR-5UTR	ENST00000481247	ENST00000435347		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000419706	ENST00000318008		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000419706	ENST00000433206		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000419706	ENST00000435347		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000408958	ENST00000318008		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000408958	ENST00000433206		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000408958	ENST00000435347		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-3CDS	ENST00000403056	ENST00000318008		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000403056	ENST00000433206		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
intron-5UTR	ENST00000403056	ENST00000435347		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	BTBD9	chr6	38607576	-	LASP1	chr17	37034339	+
5UTR-5UTR	ENST00000392259	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392259	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392259	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392259	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392259	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392259	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392259	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392259	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392259	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392259	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392266	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392266	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392266	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392266	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392266	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392266	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392266	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392266	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392266	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392266	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264274	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264274	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264274	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264274	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264274	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264274	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264274	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264274	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264274	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264274	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000432109	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000432109	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000432109	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000432109	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000432109	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000432109	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000432109	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000432109	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000432109	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000432109	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264275	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264275	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264275	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264275	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000264275	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264275	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264275	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264275	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264275	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000264275	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392258	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392258	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392258	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392258	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-5UTR	ENST00000392258	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392258	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392258	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392258	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392258	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5UTR-intron	ENST00000392258	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-5UTR	ENST00000490682	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-5UTR	ENST00000490682	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-5UTR	ENST00000490682	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-5UTR	ENST00000490682	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-5UTR	ENST00000490682	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-intron	ENST00000490682	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-intron	ENST00000490682	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-intron	ENST00000490682	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-intron	ENST00000490682	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
3UTR-intron	ENST00000490682	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000358485	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000358485	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000358485	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000358485	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000358485	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000358485	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000358485	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000358485	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000358485	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000358485	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000323492	ENST00000355117		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000323492	ENST00000540841		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000323492	ENST00000540178		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000323492	ENST00000360409		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-5UTR	ENST00000323492	ENST00000417189		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000323492	ENST00000357118		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000323492	ENST00000357785		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000323492	ENST00000272849		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000323492	ENST00000412873		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
intron-intron	ENST00000323492	ENST00000485684		TCGA	RV	PRAD	TCGA-CH-5792-01A	CASP8	chr2	202098835	+	NRP2	chr2	206547815	+
5CDS-intron	ENST00000382518	ENST00000512215		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382518	ENST00000394854		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382518	ENST00000323055		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382518	ENST00000394853		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382518	ENST00000507176		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382518	ENST00000523694		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382518	ENST00000510292		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000512215		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000394854		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000323055		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000394853		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000507176		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000523694		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000009180	ENST00000510292		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000512215		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000394854		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000323055		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000394853		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000507176		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000523694		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000382515	ENST00000510292		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000512215		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000394854		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000323055		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000394853		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000507176		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000523694		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000481267	ENST00000510292		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	CD9	chr12	6347425	+	PPP3CA	chr4	102269435	-
In-frame	ENST00000264982	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000264982	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
In-frame	ENST00000542237	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000542237	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
In-frame	ENST00000489254	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000489254	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
Frame-shit	ENST00000484888	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
5CDS-intron	ENST00000484888	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000481834	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-intron	ENST00000481834	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000478673	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-intron	ENST00000478673	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000464035	ENST00000241261		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-intron	ENST00000464035	ENST00000420541		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	CEP70	chr3	138216873	-	TNFSF10	chr3	172227111	-
intron-3CDS	ENST00000374746	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000374746	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000374748	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000374748	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000374749	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000374749	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
5UTR-3CDS	ENST00000374751	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
5UTR-3CDS	ENST00000374751	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
5UTR-3CDS	ENST00000602371	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
5UTR-3CDS	ENST00000602371	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
5UTR-3CDS	ENST00000374742	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
5UTR-3CDS	ENST00000374742	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000537177	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000537177	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000478044	ENST00000339022		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
intron-3CDS	ENST00000478044	ENST00000285979		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	CUL2	chr10	35379358	-	CYP2C18	chr10	96447527	+
In-frame	ENST00000367843	ENST00000359523		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367843	ENST00000392121		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367843	ENST00000474859		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367843	ENST00000403379		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000359523		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000392121		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000432587	ENST00000474859		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000432587	ENST00000403379		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000359523		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000392121		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000312263	ENST00000474859		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000312263	ENST00000403379		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000359523		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000392121		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000367840	ENST00000474859		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
5CDS-intron	ENST00000367840	ENST00000403379		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000359523		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000392121		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-3CDS	ENST00000470919	ENST00000474859		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
intron-intron	ENST00000470919	ENST00000403379		TCGA	RV	PRAD	TCGA-G9-A9S0-01A	DCAF6	chr1	167974031	+	MPZL1	chr1	167734820	+
In-frame	ENST00000428084	ENST00000405709		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000428084	ENST00000331762		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000428084	ENST00000452895		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000428084	ENST00000415362		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000428084	ENST00000447215		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000428084	ENST00000437687		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5CDS-intron	ENST00000428084	ENST00000489381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5CDS-intron	ENST00000428084	ENST00000450877		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-3CDS	ENST00000494651	ENST00000405709		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-3CDS	ENST00000494651	ENST00000331762		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-3CDS	ENST00000494651	ENST00000452895		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-3CDS	ENST00000494651	ENST00000415362		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-3CDS	ENST00000494651	ENST00000447215		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-3CDS	ENST00000494651	ENST00000437687		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-intron	ENST00000494651	ENST00000489381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
intron-intron	ENST00000494651	ENST00000450877		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000437633	ENST00000405709		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000437633	ENST00000331762		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000437633	ENST00000452895		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000437633	ENST00000415362		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000437633	ENST00000447215		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
In-frame	ENST00000437633	ENST00000437687		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5CDS-intron	ENST00000437633	ENST00000489381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5CDS-intron	ENST00000437633	ENST00000450877		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000476846	ENST00000405709		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000476846	ENST00000331762		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000476846	ENST00000452895		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000476846	ENST00000415362		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000476846	ENST00000447215		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000476846	ENST00000437687		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-intron	ENST00000476846	ENST00000489381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-intron	ENST00000476846	ENST00000450877		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DOCK4	chr7	111846157	-	IMMP2L	chr7	111127397	-
5UTR-3CDS	ENST00000228862	ENST00000542728		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
5UTR-3CDS	ENST00000228862	ENST00000314565		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
5UTR-3CDS	ENST00000228862	ENST00000298571		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
intron-3CDS	ENST00000298573	ENST00000542728		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
intron-3CDS	ENST00000298573	ENST00000314565		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
intron-3CDS	ENST00000298573	ENST00000298571		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
intron-3CDS	ENST00000545864	ENST00000542728		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
intron-3CDS	ENST00000545864	ENST00000314565		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
intron-3CDS	ENST00000545864	ENST00000298571		TCGA	RV	PRAD	TCGA-G9-7525-01A	DUSP16	chr12	12715051	-	LOH12CR1	chr12	12588562	+
5UTR-3CDS	ENST00000389560	ENST00000261168		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000389560	ENST00000543189		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000389560	ENST00000536444		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000389560	ENST00000544627		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000389560	ENST00000541654		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000389560	ENST00000540793		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-3CDS	ENST00000443539	ENST00000261168		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000443539	ENST00000543189		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000443539	ENST00000536444		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000443539	ENST00000544627		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000443539	ENST00000541654		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000443539	ENST00000540793		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-3CDS	ENST00000392352	ENST00000261168		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000392352	ENST00000543189		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000392352	ENST00000536444		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000392352	ENST00000544627		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000392352	ENST00000541654		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000392352	ENST00000540793		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-3CDS	ENST00000361109	ENST00000261168		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000361109	ENST00000543189		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000361109	ENST00000536444		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000361109	ENST00000544627		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000361109	ENST00000541654		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5UTR-intron	ENST00000361109	ENST00000540793		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-3CDS	ENST00000376625	ENST00000261168		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000376625	ENST00000543189		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000376625	ENST00000536444		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000376625	ENST00000544627		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000376625	ENST00000541654		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000376625	ENST00000540793		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-3CDS	ENST00000475841	ENST00000261168		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000475841	ENST00000543189		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000475841	ENST00000536444		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000475841	ENST00000544627		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000475841	ENST00000541654		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
intron-intron	ENST00000475841	ENST00000540793		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	EP400NL	chr12	132575488	+	ATF7IP	chr12	14649165	+
5CDS-5UTR	ENST00000306320	ENST00000360578		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FAM134B	chr5	16565872	-	TPPP	chr5	678179	-
intron-5UTR	ENST00000399793	ENST00000360578		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FAM134B	chr5	16565872	-	TPPP	chr5	678179	-
intron-5UTR	ENST00000509048	ENST00000360578		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	FAM134B	chr5	16565872	-	TPPP	chr5	678179	-
Frame-shit	ENST00000355619	ENST00000544440		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
Frame-shit	ENST00000355619	ENST00000407578		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
Frame-shit	ENST00000355619	ENST00000357337		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5CDS-intron	ENST00000355619	ENST00000360084		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5CDS-intron	ENST00000355619	ENST00000482517		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5UTR-3CDS	ENST00000477982	ENST00000544440		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5UTR-3CDS	ENST00000477982	ENST00000407578		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5UTR-3CDS	ENST00000477982	ENST00000357337		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5UTR-intron	ENST00000477982	ENST00000360084		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
5UTR-intron	ENST00000477982	ENST00000482517		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	FBXL3	chr13	77589544	-	MYCBP2	chr13	77625297	-
intron-5UTR	ENST00000503238	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508632		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FRYL	chr4	48782095	-	OCIAD2	chr4	48906628	-
Frame-shit	ENST00000434000	ENST00000312150		TCGA	RV	PRAD	TCGA-G9-6356-01A	GPATCH8	chr17	42512433	-	KRT25	chr17	38904638	-
In-frame	ENST00000591680	ENST00000312150		TCGA	RV	PRAD	TCGA-G9-6356-01A	GPATCH8	chr17	42512433	-	KRT25	chr17	38904638	-
5UTR-3CDS	ENST00000586265	ENST00000312150		TCGA	RV	PRAD	TCGA-G9-6356-01A	GPATCH8	chr17	42512433	-	KRT25	chr17	38904638	-
intron-3CDS	ENST00000592154	ENST00000312150		TCGA	RV	PRAD	TCGA-G9-6356-01A	GPATCH8	chr17	42512433	-	KRT25	chr17	38904638	-
intron-3CDS	ENST00000588554	ENST00000312150		TCGA	RV	PRAD	TCGA-G9-6356-01A	GPATCH8	chr17	42512433	-	KRT25	chr17	38904638	-
In-frame	ENST00000370500	ENST00000359242		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
In-frame	ENST00000370500	ENST00000370567		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
In-frame	ENST00000370500	ENST00000394731		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
In-frame	ENST00000370500	ENST00000317336		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
In-frame	ENST00000370500	ENST00000370566		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
In-frame	ENST00000370500	ENST00000294678		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5CDS-5UTR	ENST00000370500	ENST00000524695		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5CDS-intron	ENST00000370500	ENST00000478286		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5CDS-intron	ENST00000370500	ENST00000486215		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-3CDS	ENST00000494819	ENST00000359242		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-3CDS	ENST00000494819	ENST00000370567		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-3CDS	ENST00000494819	ENST00000394731		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-3CDS	ENST00000494819	ENST00000317336		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-3CDS	ENST00000494819	ENST00000370566		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-3CDS	ENST00000494819	ENST00000294678		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-5UTR	ENST00000494819	ENST00000524695		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-intron	ENST00000494819	ENST00000478286		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
5UTR-intron	ENST00000494819	ENST00000486215		TCGA	RV	PRAD	TCGA-Y6-A9XI-01A	GTF2B	chr1	89357166	-	ODF2L	chr1	86826219	-
In-frame	ENST00000355904	ENST00000380254		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
Frame-shit	ENST00000355904	ENST00000346498		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
In-frame	ENST00000355904	ENST00000518734		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
5CDS-intron	ENST00000355904	ENST00000517436		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
5CDS-intron	ENST00000355904	ENST00000519471		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
intron-3CDS	ENST00000522833	ENST00000380254		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
intron-3CDS	ENST00000522833	ENST00000346498		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
intron-3CDS	ENST00000522833	ENST00000518734		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
intron-intron	ENST00000522833	ENST00000517436		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
intron-intron	ENST00000522833	ENST00000519471		TCGA	RV	PRAD	TCGA-VP-A87D-01A	GTF2E2	chr8	30492549	-	FBXO16	chr8	28286253	-
5CDS-intron	ENST00000352456	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000352456	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000352456	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000352456	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000352456	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000352456	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000595018	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000595018	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000595018	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000595018	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000595018	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000595018	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000392006	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000392006	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000392006	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000392006	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000392006	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000392006	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000378215	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000378215	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000378215	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000378215	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000378215	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000378215	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000602130	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000602130	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000602130	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000602130	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000602130	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000602130	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000593587	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000593587	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000593587	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000593587	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000593587	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000593587	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000263367	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000263367	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000263367	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000263367	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000263367	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
5CDS-intron	ENST00000263367	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
intron-intron	ENST00000594207	ENST00000355178		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
intron-intron	ENST00000594207	ENST00000282185		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
intron-intron	ENST00000594207	ENST00000458350		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
intron-intron	ENST00000594207	ENST00000513443		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
intron-intron	ENST00000594207	ENST00000513634		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
intron-intron	ENST00000594207	ENST00000514253		TCGA	RV	PRAD	TCGA-EJ-7321-01A	HNRNPUL1	chr19	41800591	+	ATG10	chr5	81548381	+
Frame-shit	ENST00000371581	ENST00000378847		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000371581	ENST00000487696		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000371581	ENST00000378845		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
In-frame	ENST00000265986	ENST00000378847		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000265986	ENST00000487696		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000265986	ENST00000378845		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5UTR-3CDS	ENST00000496903	ENST00000378847		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5UTR-intron	ENST00000496903	ENST00000487696		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5UTR-intron	ENST00000496903	ENST00000378845		TCGA	RV	PRAD	TCGA-EJ-7314-01A	IDE	chr10	94243012	-	CAMK1D	chr10	12802947	+
5CDS-intron	ENST00000302327	ENST00000345146		TCGA	RV	PRAD	TCGA-EJ-5516-01A	ING2	chr4	184426520	+	IDH1	chr2	209120313	-
5CDS-intron	ENST00000302327	ENST00000446179		TCGA	RV	PRAD	TCGA-EJ-5516-01A	ING2	chr4	184426520	+	IDH1	chr2	209120313	-
5CDS-intron	ENST00000302327	ENST00000415913		TCGA	RV	PRAD	TCGA-EJ-5516-01A	ING2	chr4	184426520	+	IDH1	chr2	209120313	-
intron-intron	ENST00000434682	ENST00000345146		TCGA	RV	PRAD	TCGA-EJ-5516-01A	ING2	chr4	184426520	+	IDH1	chr2	209120313	-
intron-intron	ENST00000434682	ENST00000446179		TCGA	RV	PRAD	TCGA-EJ-5516-01A	ING2	chr4	184426520	+	IDH1	chr2	209120313	-
intron-intron	ENST00000434682	ENST00000415913		TCGA	RV	PRAD	TCGA-EJ-5516-01A	ING2	chr4	184426520	+	IDH1	chr2	209120313	-
In-frame	ENST00000258111	ENST00000315289		TCGA	RV	PRAD	TCGA-J4-A83I-01A	KCNMB4	chr12	70760850	+	RTKN2	chr10	63996022	-
Frame-shit	ENST00000258111	ENST00000395265		TCGA	RV	PRAD	TCGA-J4-A83I-01A	KCNMB4	chr12	70760850	+	RTKN2	chr10	63996022	-
Frame-shit	ENST00000258111	ENST00000373789		TCGA	RV	PRAD	TCGA-J4-A83I-01A	KCNMB4	chr12	70760850	+	RTKN2	chr10	63996022	-
5CDS-intron	ENST00000258111	ENST00000395260		TCGA	RV	PRAD	TCGA-J4-A83I-01A	KCNMB4	chr12	70760850	+	RTKN2	chr10	63996022	-
intron-3CDS	ENST00000541515	ENST00000430479		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000399357		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000420159		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000343495		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000242066		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000405192		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000405358		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000403527		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000405218		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000403685		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-5UTR	ENST00000541515	ENST00000476720		TCGA	RV	PRAD	TCGA-CH-5745-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
Frame-shit	ENST00000354489	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000354489	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000354489	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000313243	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000313243	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000313243	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000474039	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000474039	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
In-frame	ENST00000474039	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000538030	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000538030	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000538030	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000536370	ENST00000394735		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000536370	ENST00000340139		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
intron-3CDS	ENST00000536370	ENST00000451321		TCGA	RV	PRAD	TCGA-HC-8266-01A	MAK	chr6	10791908	-	INTS12	chr4	106604474	-
Frame-shit	ENST00000509479	ENST00000394205		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
Frame-shit	ENST00000509479	ENST00000338517		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
Frame-shit	ENST00000509479	ENST00000394203		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000506322		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000512749		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000608372		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000506597		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000394201		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000510586		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
5CDS-5UTR	ENST00000509479	ENST00000502535		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-3CDS	ENST00000327122	ENST00000394205		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-3CDS	ENST00000327122	ENST00000338517		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-3CDS	ENST00000327122	ENST00000394203		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000506322		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000512749		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000608372		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000506597		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000394201		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000510586		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000327122	ENST00000502535		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-3CDS	ENST00000398940	ENST00000394205		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-3CDS	ENST00000398940	ENST00000338517		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-3CDS	ENST00000398940	ENST00000394203		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000506322		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000512749		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000608372		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000506597		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000394201		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000510586		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
intron-5UTR	ENST00000398940	ENST00000502535		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	MAML3	chr4	141074014	-	SCOC	chr4	141300275	+
In-frame	ENST00000250894	ENST00000262319		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAPK8IP3	chr16	1813007	+	TELO2	chr16	1551664	+
5CDS-intron	ENST00000250894	ENST00000564507		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAPK8IP3	chr16	1813007	+	TELO2	chr16	1551664	+
In-frame	ENST00000356010	ENST00000262319		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAPK8IP3	chr16	1813007	+	TELO2	chr16	1551664	+
5CDS-intron	ENST00000356010	ENST00000564507		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAPK8IP3	chr16	1813007	+	TELO2	chr16	1551664	+
intron-3CDS	ENST00000568271	ENST00000262319		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAPK8IP3	chr16	1813007	+	TELO2	chr16	1551664	+
intron-intron	ENST00000568271	ENST00000564507		TCGA	RV	PRAD	TCGA-HC-8265-01A	MAPK8IP3	chr16	1813007	+	TELO2	chr16	1551664	+
In-frame	ENST00000371191	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000371191	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000407417	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000407417	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
intron-3CDS	ENST00000479364	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
intron-5UTR	ENST00000479364	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000371189	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000371189	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000403491	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000403491	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000371187	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000371187	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000485903	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000485903	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000371185	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000371185	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
In-frame	ENST00000371184	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
5CDS-5UTR	ENST00000371184	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
intron-3CDS	ENST00000357977	ENST00000371204		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
intron-5UTR	ENST00000357977	ENST00000492633		TCGA	RV	PRAD	TCGA-CH-5740-01A	NFIA	chr1	61554352	+	CYP2J2	chr1	60359501	-
Frame-shit	ENST00000529359	ENST00000256255		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000529359	ENST00000545648		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000529359	ENST00000536273		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-intron	ENST00000529359	ENST00000521083		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
Frame-shit	ENST00000424479	ENST00000256255		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000424479	ENST00000545648		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000424479	ENST00000536273		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-intron	ENST00000424479	ENST00000521083		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
In-frame	ENST00000531823	ENST00000256255		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000531823	ENST00000545648		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000531823	ENST00000536273		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-intron	ENST00000531823	ENST00000521083		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-3CDS	ENST00000530588	ENST00000256255		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-5UTR	ENST00000530588	ENST00000545648		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-5UTR	ENST00000530588	ENST00000536273		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-intron	ENST00000530588	ENST00000521083		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
Frame-shit	ENST00000422581	ENST00000256255		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000422581	ENST00000545648		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000422581	ENST00000536273		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-intron	ENST00000422581	ENST00000521083		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-3CDS	ENST00000419686	ENST00000256255		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-5UTR	ENST00000419686	ENST00000545648		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-5UTR	ENST00000419686	ENST00000536273		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
intron-intron	ENST00000419686	ENST00000521083		TCGA	RV	PRAD	TCGA-EJ-A65M-01A	PPAPDC1B	chr8	38124785	-	TMEM66	chr8	29927575	-
5CDS-5UTR	ENST00000264158	ENST00000409869		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-5UTR	ENST00000264158	ENST00000295095		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-intron	ENST00000264158	ENST00000473426		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-5UTR	ENST00000539493	ENST00000409869		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-5UTR	ENST00000539493	ENST00000295095		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-intron	ENST00000539493	ENST00000473426		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-5UTR	ENST00000442034	ENST00000409869		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-5UTR	ENST00000442034	ENST00000295095		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
5CDS-intron	ENST00000442034	ENST00000473426		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
3UTR-5UTR	ENST00000487003	ENST00000409869		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
3UTR-5UTR	ENST00000487003	ENST00000295095		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
3UTR-intron	ENST00000487003	ENST00000473426		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
intron-5UTR	ENST00000425393	ENST00000409869		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
intron-5UTR	ENST00000425393	ENST00000295095		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
intron-intron	ENST00000425393	ENST00000473426		TCGA	RV	PRAD	TCGA-M7-A724-01A	RAB3GAP1	chr2	135893502	+	ARHGAP15	chr2	143913046	+
In-frame	ENST00000408982	ENST00000355280		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000408982	ENST00000347992		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000408982	ENST00000453408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000262477	ENST00000355280		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000262477	ENST00000347992		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000262477	ENST00000453408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000537505	ENST00000355280		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000537505	ENST00000347992		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000537505	ENST00000453408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000546142	ENST00000355280		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000546142	ENST00000347992		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000546142	ENST00000453408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000341923	ENST00000355280		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000341923	ENST00000347992		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000341923	ENST00000453408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
intron-3CDS	ENST00000570487	ENST00000355280		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
intron-3CDS	ENST00000570487	ENST00000347992		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
intron-3CDS	ENST00000570487	ENST00000453408		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RABEP1	chr17	5281527	+	MINK1	chr17	4781612	+
In-frame	ENST00000361732	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000361732	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000509734	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000509734	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000354868	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000354868	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5UTR-3CDS	ENST00000521422	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5UTR-intron	ENST00000521422	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
intron-3CDS	ENST00000504177	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
intron-intron	ENST00000504177	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000354312	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000354312	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000345306	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000345306	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000305138	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000305138	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000282891	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000282891	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5UTR-3CDS	ENST00000358030	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5UTR-intron	ENST00000358030	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
In-frame	ENST00000380774	ENST00000398844		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
5CDS-intron	ENST00000380774	ENST00000322887		TCGA	RV	PRAD	TCGA-EJ-5524-01A	RAD17	chr5	68670538	+	SEC24A	chr5	134050714	+
Frame-shit	ENST00000251849	ENST00000495893		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000251849	ENST00000494943		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000251849	ENST00000467570		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000251849	ENST00000474275		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000251849	ENST00000497658		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000251849	ENST00000481639		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000442415	ENST00000495893		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000442415	ENST00000494943		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000442415	ENST00000467570		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000442415	ENST00000474275		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000442415	ENST00000497658		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000442415	ENST00000481639		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
In-frame	ENST00000534997	ENST00000495893		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000534997	ENST00000494943		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000534997	ENST00000467570		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000534997	ENST00000474275		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000534997	ENST00000497658		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000534997	ENST00000481639		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000542177	ENST00000495893		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000542177	ENST00000494943		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000542177	ENST00000467570		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000542177	ENST00000474275		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000542177	ENST00000497658		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
5CDS-intron	ENST00000542177	ENST00000481639		TCGA	RV	PRAD	TCGA-HC-8256-01A	RAF1	chr3	12641190	-	PHC3	chr3	169815172	-
Frame-shit	ENST00000344921	ENST00000255695		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SMARCB1	chr22	24159123	+	HRASLS2	chr11	63320537	-
Frame-shit	ENST00000263121	ENST00000255695		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SMARCB1	chr22	24159123	+	HRASLS2	chr11	63320537	-
Frame-shit	ENST00000407422	ENST00000255695		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SMARCB1	chr22	24159123	+	HRASLS2	chr11	63320537	-
Frame-shit	ENST00000407082	ENST00000255695		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SMARCB1	chr22	24159123	+	HRASLS2	chr11	63320537	-
3UTR-3CDS	ENST00000477836	ENST00000255695		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SMARCB1	chr22	24159123	+	HRASLS2	chr11	63320537	-
5CDS-intron	ENST00000367121	ENST00000515361		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367121	ENST00000443060		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367121	ENST00000354419		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367121	ENST00000351261		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367122	ENST00000515361		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367122	ENST00000443060		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367122	ENST00000354419		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000367122	ENST00000351261		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000355585	ENST00000515361		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000355585	ENST00000443060		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000355585	ENST00000354419		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000355585	ENST00000351261		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000449859	ENST00000515361		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000449859	ENST00000443060		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000449859	ENST00000354419		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000449859	ENST00000351261		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000367112	ENST00000515361		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000367112	ENST00000443060		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000367112	ENST00000354419		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
intron-intron	ENST00000367112	ENST00000351261		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SYNJ2	chr6	158403120	+	KIF25	chr6	168439233	+
5CDS-intron	ENST00000418390	ENST00000257177		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000418390	ENST00000371544		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000418390	ENST00000371541		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000418390	ENST00000355809		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000609199	ENST00000257177		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000609199	ENST00000371544		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000609199	ENST00000371541		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5CDS-intron	ENST00000609199	ENST00000355809		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
intron-intron	ENST00000487554	ENST00000257177		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
intron-intron	ENST00000487554	ENST00000371544		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
intron-intron	ENST00000487554	ENST00000371541		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
intron-intron	ENST00000487554	ENST00000355809		TCGA	RV	PRAD	TCGA-J9-A52E-01A	TCEB3	chr1	24083615	+	ZCCHC11	chr1	52874132	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5495-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000337273	ENST00000302351		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000337273	ENST00000510316		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000337273	ENST00000509284		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000337273	ENST00000537006		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000454282	ENST00000302351		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000454282	ENST00000510316		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000454282	ENST00000509284		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000454282	ENST00000537006		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
3UTR-intron	ENST00000447967	ENST00000302351		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
3UTR-intron	ENST00000447967	ENST00000510316		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
3UTR-intron	ENST00000447967	ENST00000509284		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
3UTR-intron	ENST00000447967	ENST00000537006		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000523768	ENST00000302351		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000523768	ENST00000510316		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000523768	ENST00000509284		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000523768	ENST00000537006		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
intron-intron	ENST00000513944	ENST00000302351		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
intron-intron	ENST00000513944	ENST00000510316		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
intron-intron	ENST00000513944	ENST00000509284		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
intron-intron	ENST00000513944	ENST00000537006		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000506351	ENST00000302351		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000506351	ENST00000510316		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000506351	ENST00000509284		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000506351	ENST00000537006		TCGA	RV	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933526	-
In-frame	ENST00000358465	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000358465	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000358465	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000358465	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5750-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000372899	ENST00000265351		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
5CDS-intron	ENST00000372899	ENST00000424378		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
In-frame	ENST00000372901	ENST00000265351		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
5CDS-intron	ENST00000372901	ENST00000424378		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
3UTR-3CDS	ENST00000372883	ENST00000265351		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
3UTR-intron	ENST00000372883	ENST00000424378		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
intron-3CDS	ENST00000372903	ENST00000265351		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
intron-intron	ENST00000372903	ENST00000424378		TCGA	RV	PRAD	TCGA-KK-A59X-01A	UBR2	chr6	42650849	+	XPO5	chr6	43501744	-
In-frame	ENST00000219689	ENST00000564349		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
In-frame	ENST00000219689	ENST00000300005		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
In-frame	ENST00000219689	ENST00000357967		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
In-frame	ENST00000219689	ENST00000569729		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
5CDS-intron	ENST00000219689	ENST00000389345		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
5CDS-intron	ENST00000219689	ENST00000563117		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
5CDS-intron	ENST00000219689	ENST00000568251		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-3CDS	ENST00000567975	ENST00000564349		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-3CDS	ENST00000567975	ENST00000300005		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-3CDS	ENST00000567975	ENST00000357967		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-3CDS	ENST00000567975	ENST00000569729		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-intron	ENST00000567975	ENST00000389345		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-intron	ENST00000567975	ENST00000563117		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
intron-intron	ENST00000567975	ENST00000568251		TCGA	RV	PRAD	TCGA-HI-7168-01A	USP31	chr16	23113640	-	ERI2	chr16	20811724	-
In-frame	ENST00000526054	ENST00000215793		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
In-frame	ENST00000526054	ENST00000439242		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
Frame-shit	ENST00000529182	ENST00000215793		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
Frame-shit	ENST00000529182	ENST00000439242		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
Frame-shit	ENST00000377348	ENST00000215793		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
Frame-shit	ENST00000377348	ENST00000439242		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
In-frame	ENST00000292510	ENST00000215793		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
In-frame	ENST00000292510	ENST00000439242		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
intron-3CDS	ENST00000526734	ENST00000215793		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
intron-3CDS	ENST00000526734	ENST00000439242		TCGA	RV	PRAD	TCGA-EJ-7783-01A	VPS28	chr8	145649000	-	SF3A1	chr22	30742508	-
5UTR-3CDS	ENST00000535420	ENST00000367142		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
5UTR-intron	ENST00000535420	ENST00000464938		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
5UTR-3CDS	ENST00000368426	ENST00000367142		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
5UTR-intron	ENST00000368426	ENST00000464938		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
3UTR-3CDS	ENST00000487542	ENST00000367142		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
3UTR-intron	ENST00000487542	ENST00000464938		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
5UTR-3CDS	ENST00000417934	ENST00000367142		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
5UTR-intron	ENST00000417934	ENST00000464938		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
intron-3CDS	ENST00000292176	ENST00000367142		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
intron-intron	ENST00000292176	ENST00000464938		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	ZBTB7B	chr1	154975419	+	NUCKS1	chr1	205698749	-
Frame-shit	ENST00000265343	ENST00000308624		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
Frame-shit	ENST00000265343	ENST00000407292		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
5CDS-3UTR	ENST00000265343	ENST00000467759		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
intron-3CDS	ENST00000378595	ENST00000308624		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
intron-3CDS	ENST00000378595	ENST00000407292		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
intron-3UTR	ENST00000378595	ENST00000467759		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
intron-3CDS	ENST00000491831	ENST00000308624		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
intron-3CDS	ENST00000491831	ENST00000407292		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
intron-3UTR	ENST00000491831	ENST00000467759		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	AFF4	chr5	132227856	-	SNTG2	chr2	1204789	+
In-frame	ENST00000325006	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000325006	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
In-frame	ENST00000446544	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000446544	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000531335	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-intron	ENST00000531335	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000474594	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-intron	ENST00000474594	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000446212	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-intron	ENST00000446212	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000490911	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-intron	ENST00000490911	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000472554	ENST00000354725		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
intron-intron	ENST00000472554	ENST00000467238		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	AHCYL2	chr7	128865280	+	SND1	chr7	127714554	+
In-frame	ENST00000336199	ENST00000380737		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
In-frame	ENST00000336199	ENST00000315985		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
5CDS-intron	ENST00000336199	ENST00000523473		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
Frame-shit	ENST00000366540	ENST00000380737		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
Frame-shit	ENST00000366540	ENST00000315985		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
5CDS-intron	ENST00000366540	ENST00000523473		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
In-frame	ENST00000366539	ENST00000380737		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
In-frame	ENST00000366539	ENST00000315985		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
5CDS-intron	ENST00000366539	ENST00000523473		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
In-frame	ENST00000263826	ENST00000380737		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
In-frame	ENST00000263826	ENST00000315985		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
5CDS-intron	ENST00000263826	ENST00000523473		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
intron-3CDS	ENST00000492957	ENST00000380737		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
intron-3CDS	ENST00000492957	ENST00000315985		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
intron-intron	ENST00000492957	ENST00000523473		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	AKT3	chr1	244006427	-	PPP2R2A	chr8	26211984	+
In-frame	ENST00000426335	ENST00000434748		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
In-frame	ENST00000426335	ENST00000261673		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5CDS-intron	ENST00000426335	ENST00000542061		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
In-frame	ENST00000524782	ENST00000434748		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
In-frame	ENST00000524782	ENST00000261673		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5CDS-intron	ENST00000524782	ENST00000542061		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5UTR-3CDS	ENST00000395449	ENST00000434748		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5UTR-3CDS	ENST00000395449	ENST00000261673		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5UTR-intron	ENST00000395449	ENST00000542061		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
Frame-shit	ENST00000319543	ENST00000434748		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
Frame-shit	ENST00000319543	ENST00000261673		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5CDS-intron	ENST00000319543	ENST00000542061		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
Frame-shit	ENST00000419701	ENST00000434748		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
Frame-shit	ENST00000419701	ENST00000261673		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
5CDS-intron	ENST00000419701	ENST00000542061		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	ARFGAP2	chr11	47187819	-	FBRSL1	chr12	133144067	+
Frame-shit	ENST00000308448	ENST00000399262		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000308448	ENST00000402544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000308448	ENST00000399251		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000308448	ENST00000542921		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
5CDS-intron	ENST00000308448	ENST00000489372		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
In-frame	ENST00000328142	ENST00000399262		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
In-frame	ENST00000328142	ENST00000402544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
In-frame	ENST00000328142	ENST00000399251		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
In-frame	ENST00000328142	ENST00000542921		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
5CDS-intron	ENST00000328142	ENST00000489372		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000400215	ENST00000399262		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000400215	ENST00000402544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000400215	ENST00000399251		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000400215	ENST00000542921		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-intron	ENST00000400215	ENST00000489372		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000541004	ENST00000399262		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000541004	ENST00000402544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000541004	ENST00000399251		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000541004	ENST00000542921		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
5CDS-intron	ENST00000541004	ENST00000489372		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000495903	ENST00000399262		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000495903	ENST00000402544		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000495903	ENST00000399251		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-3CDS	ENST00000495903	ENST00000542921		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
intron-intron	ENST00000495903	ENST00000489372		TCGA	RV	PRAD	TCGA-J4-A83I-01A	ATAD1	chr10	89530709	-	JMJD1C	chr10	64968995	-
Frame-shit	ENST00000323116	ENST00000395891		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
Frame-shit	ENST00000323116	ENST00000453890		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
5CDS-intron	ENST00000323116	ENST00000471043		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
intron-3CDS	ENST00000493826	ENST00000395891		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
intron-3CDS	ENST00000493826	ENST00000453890		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
intron-intron	ENST00000493826	ENST00000471043		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
3UTR-3CDS	ENST00000482794	ENST00000395891		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
3UTR-3CDS	ENST00000482794	ENST00000453890		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
3UTR-intron	ENST00000482794	ENST00000471043		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	ATP11B	chr3	182559910	+	HECW1	chr7	43546736	+
intron-intron	ENST00000548757	ENST00000440781		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
intron-5UTR	ENST00000548757	ENST00000431837		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
intron-5UTR	ENST00000548757	ENST00000448290		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
intron-5UTR	ENST00000548757	ENST00000551736		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
5CDS-intron	ENST00000356891	ENST00000440781		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000356891	ENST00000431837		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000356891	ENST00000448290		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
5CDS-5UTR	ENST00000356891	ENST00000551736		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	C12orf29	chr12	88429515	+	IRAK4	chr12	44161906	+
Frame-shit	ENST00000471694	ENST00000265069		TCGA	RV	PRAD	TCGA-CH-5761-01A	CD47	chr3	107762146	-	ZFR	chr5	32395410	-
5CDS-intron	ENST00000471694	ENST00000510369		TCGA	RV	PRAD	TCGA-CH-5761-01A	CD47	chr3	107762146	-	ZFR	chr5	32395410	-
Frame-shit	ENST00000355354	ENST00000265069		TCGA	RV	PRAD	TCGA-CH-5761-01A	CD47	chr3	107762146	-	ZFR	chr5	32395410	-
5CDS-intron	ENST00000355354	ENST00000510369		TCGA	RV	PRAD	TCGA-CH-5761-01A	CD47	chr3	107762146	-	ZFR	chr5	32395410	-
intron-3CDS	ENST00000361309	ENST00000265069		TCGA	RV	PRAD	TCGA-CH-5761-01A	CD47	chr3	107762146	-	ZFR	chr5	32395410	-
intron-intron	ENST00000361309	ENST00000510369		TCGA	RV	PRAD	TCGA-CH-5761-01A	CD47	chr3	107762146	-	ZFR	chr5	32395410	-
intron-3CDS	ENST00000548898	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000548898	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000552067	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000552067	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000420846	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000420846	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
Frame-shit	ENST00000548160	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000548160	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
Frame-shit	ENST00000546939	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000546939	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
Frame-shit	ENST00000552692	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000552692	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000549117	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000549117	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000257857	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000257857	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000552754	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000552754	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000550776	ENST00000261772		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000550776	ENST00000564359		TCGA	RV	PRAD	TCGA-EJ-5499-01A	CD63	chr12	56119252	-	AARS	chr16	70295060	-
5UTR-5UTR	ENST00000367607	ENST00000367838		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-5UTR	ENST00000367607	ENST00000271357		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-intron	ENST00000367607	ENST00000367836		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-intron	ENST00000367607	ENST00000539777		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-intron	ENST00000367607	ENST00000537209		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-5UTR	ENST00000367607	ENST00000361697		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-intron	ENST00000367607	ENST00000546300		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-5UTR	ENST00000367607	ENST00000367835		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
5UTR-intron	ENST00000367607	ENST00000485232		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-5UTR	ENST00000490141	ENST00000367838		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-5UTR	ENST00000490141	ENST00000271357		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-intron	ENST00000490141	ENST00000367836		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-intron	ENST00000490141	ENST00000539777		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-intron	ENST00000490141	ENST00000537209		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-5UTR	ENST00000490141	ENST00000361697		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-intron	ENST00000490141	ENST00000546300		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-5UTR	ENST00000490141	ENST00000367835		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
intron-intron	ENST00000490141	ENST00000485232		TCGA	RV	PRAD	TCGA-EJ-5518-01A	CEP350	chr1	179924277	+	GPR161	chr1	168074132	-
In-frame	ENST00000287916	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
5CDS-intron	ENST00000287916	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
In-frame	ENST00000535571	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
5CDS-intron	ENST00000535571	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
In-frame	ENST00000394605	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
5CDS-intron	ENST00000394605	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
intron-3CDS	ENST00000478752	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
intron-intron	ENST00000478752	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7783-01A	CLDN12	chr7	90045268	+	SPCS3	chr4	177243321	+
5UTR-3UTR	ENST00000446256	ENST00000465039		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000446256	ENST00000440097		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000446256	ENST00000273317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000445061	ENST00000465039		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000445061	ENST00000440097		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000445061	ENST00000273317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
3UTR-3UTR	ENST00000476446	ENST00000465039		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
3UTR-3UTR	ENST00000476446	ENST00000440097		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
3UTR-3UTR	ENST00000476446	ENST00000273317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000348968	ENST00000465039		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000348968	ENST00000440097		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5UTR-3UTR	ENST00000348968	ENST00000273317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000457607	ENST00000465039		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000457607	ENST00000440097		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
intron-3UTR	ENST00000457607	ENST00000273317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DHX30	chr3	47844702	+	LIMD1	chr3	45707142	+
5CDS-intron	ENST00000446256	ENST00000466084		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000446256	ENST00000296127		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000446256	ENST00000424952		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000446256	ENST00000342790		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-intron	ENST00000445061	ENST00000466084		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000445061	ENST00000296127		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000445061	ENST00000424952		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000445061	ENST00000342790		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
intron-intron	ENST00000476446	ENST00000466084		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000476446	ENST00000296127		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000476446	ENST00000424952		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
intron-5UTR	ENST00000476446	ENST00000342790		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-intron	ENST00000348968	ENST00000466084		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000348968	ENST00000296127		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000348968	ENST00000424952		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000348968	ENST00000342790		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-intron	ENST00000457607	ENST00000466084		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000457607	ENST00000296127		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000457607	ENST00000424952		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5CDS-5UTR	ENST00000457607	ENST00000342790		TCGA	RV	PRAD	TCGA-J4-A67K-01A	DHX30	chr3	47883227	+	ZDHHC3	chr3	45000952	-
5UTR-3CDS	ENST00000367088	ENST00000278979		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-5UTR	ENST00000367088	ENST00000398083		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-5UTR	ENST00000367088	ENST00000486996		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-5UTR	ENST00000367088	ENST00000398084		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-5UTR	ENST00000367088	ENST00000375966		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-5UTR	ENST00000367088	ENST00000339738		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-5UTR	ENST00000367088	ENST00000493115		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
In-frame	ENST00000367089	ENST00000278979		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367089	ENST00000398083		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367089	ENST00000486996		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367089	ENST00000398084		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367089	ENST00000375966		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367089	ENST00000339738		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367089	ENST00000493115		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
In-frame	ENST00000367085	ENST00000278979		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367085	ENST00000398083		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367085	ENST00000486996		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367085	ENST00000398084		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367085	ENST00000375966		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367085	ENST00000339738		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000367085	ENST00000493115		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	DYNLT1	chr6	159062351	-	DUSP15	chr20	30457400	-
5UTR-intron	ENST00000373060	ENST00000449981		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373060	ENST00000359357		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373060	ENST00000441566		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373063	ENST00000449981		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373063	ENST00000359357		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373063	ENST00000441566		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000409208	ENST00000449981		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000409208	ENST00000359357		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000409208	ENST00000441566		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373057	ENST00000449981		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373057	ENST00000359357		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
5UTR-intron	ENST00000373057	ENST00000441566		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
intron-intron	ENST00000307972	ENST00000449981		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
intron-intron	ENST00000307972	ENST00000359357		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
intron-intron	ENST00000307972	ENST00000441566		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	FOXP4	chr6	41514605	+	DNAH8	chr6	38950122	+
Frame-shit	ENST00000313899	ENST00000358105		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
Frame-shit	ENST00000313899	ENST00000508675		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
5CDS-intron	ENST00000313899	ENST00000512931		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
Frame-shit	ENST00000353341	ENST00000358105		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
Frame-shit	ENST00000353341	ENST00000508675		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
5CDS-intron	ENST00000353341	ENST00000512931		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000543098	ENST00000358105		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000543098	ENST00000508675		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-intron	ENST00000543098	ENST00000512931		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000352301	ENST00000358105		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000352301	ENST00000508675		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-intron	ENST00000352301	ENST00000512931		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000508119	ENST00000358105		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000508119	ENST00000508675		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-intron	ENST00000508119	ENST00000512931		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000541060	ENST00000358105		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-3CDS	ENST00000541060	ENST00000508675		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
intron-intron	ENST00000541060	ENST00000512931		TCGA	RV	PRAD	TCGA-HC-7820-01A	HNRNPD	chr4	83292681	-	C4orf22	chr4	81865964	+
Frame-shit	ENST00000401507	ENST00000389100		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5CDS-intron	ENST00000401507	ENST00000296615		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5CDS-intron	ENST00000401507	ENST00000381081		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
3UTR-3CDS	ENST00000509663	ENST00000389100		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
3UTR-intron	ENST00000509663	ENST00000296615		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
3UTR-intron	ENST00000509663	ENST00000381081		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5UTR-3CDS	ENST00000381103	ENST00000389100		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5UTR-intron	ENST00000381103	ENST00000296615		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5UTR-intron	ENST00000381103	ENST00000381081		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
Frame-shit	ENST00000407818	ENST00000389100		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5CDS-intron	ENST00000407818	ENST00000296615		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5CDS-intron	ENST00000407818	ENST00000381081		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
intron-3CDS	ENST00000506857	ENST00000389100		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
intron-intron	ENST00000506857	ENST00000296615		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
intron-intron	ENST00000506857	ENST00000381081		TCGA	RV	PRAD	TCGA-J9-A52D-01A	KIF2A	chr5	61602363	+	RNF180	chr5	63665442	+
5UTR-3CDS	ENST00000310961	ENST00000366932		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
5UTR-intron	ENST00000310961	ENST00000491428		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
In-frame	ENST00000370958	ENST00000366932		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
5CDS-intron	ENST00000370958	ENST00000491428		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
intron-3CDS	ENST00000035383	ENST00000366932		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
intron-intron	ENST00000035383	ENST00000491428		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
intron-3CDS	ENST00000415775	ENST00000366932		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
intron-intron	ENST00000415775	ENST00000491428		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
intron-3CDS	ENST00000565615	ENST00000366932		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
intron-intron	ENST00000565615	ENST00000491428		TCGA	RV	PRAD	TCGA-HC-8257-01A	LRRC7	chr1	70034324	+	RRP15	chr1	218504290	+
Frame-shit	ENST00000375068	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000375068	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000375068	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3CDS	ENST00000375053	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000375053	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000375053	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
In-frame	ENST00000347546	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000347546	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000347546	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3CDS	ENST00000375062	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000375062	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000375062	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3CDS	ENST00000218439	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000218439	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000218439	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
Frame-shit	ENST00000375058	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000375058	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000375058	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
Frame-shit	ENST00000375060	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000375060	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
5CDS-3UTR	ENST00000375060	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3CDS	ENST00000396224	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000396224	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000396224	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3CDS	ENST00000497484	ENST00000316097		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000497484	ENST00000414057		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
intron-3UTR	ENST00000497484	ENST00000409472		TCGA	RV	PRAD	TCGA-HC-7745-01A	MAGED2	chrX	54842445	+	SCAMP4	chr19	1917693	+
In-frame	ENST00000261745	ENST00000547525		TCGA	RV	PRAD	TCGA-HC-7230-01A	NAA25	chr12	112546520	-	WSCD2	chr12	108620767	+
5CDS-intron	ENST00000261745	ENST00000550529		TCGA	RV	PRAD	TCGA-HC-7230-01A	NAA25	chr12	112546520	-	WSCD2	chr12	108620767	+
5CDS-intron	ENST00000261745	ENST00000261400		TCGA	RV	PRAD	TCGA-HC-7230-01A	NAA25	chr12	112546520	-	WSCD2	chr12	108620767	+
5CDS-intron	ENST00000261745	ENST00000332082		TCGA	RV	PRAD	TCGA-HC-7230-01A	NAA25	chr12	112546520	-	WSCD2	chr12	108620767	+
5CDS-intron	ENST00000261745	ENST00000549903		TCGA	RV	PRAD	TCGA-HC-7230-01A	NAA25	chr12	112546520	-	WSCD2	chr12	108620767	+
intron-5UTR	ENST00000563679	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-3UTR	ENST00000563679	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-5UTR	ENST00000325823	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-3UTR	ENST00000325823	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-5UTR	ENST00000447912	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-3UTR	ENST00000447912	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-5UTR	ENST00000535621	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-3UTR	ENST00000535621	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-5UTR	ENST00000455313	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-3UTR	ENST00000455313	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
3UTR-5UTR	ENST00000396410	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
3UTR-3UTR	ENST00000396410	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
5CDS-5UTR	ENST00000569715	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
5CDS-3UTR	ENST00000569715	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-5UTR	ENST00000450288	ENST00000311852		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-3UTR	ENST00000450288	ENST00000548162		TCGA	RV	PRAD	TCGA-EJ-7327-01A	PDXDC1	chr16	15131543	+	MMP14	chr14	23305829	+
intron-intron	ENST00000336061	ENST00000512215		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000336061	ENST00000394854		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000336061	ENST00000323055		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000336061	ENST00000394853		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000336061	ENST00000507176		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000336061	ENST00000523694		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000336061	ENST00000510292		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000512215		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000394854		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000323055		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000394853		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000507176		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000523694		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000542104	ENST00000510292		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000512215		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000394854		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000323055		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000394853		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000507176		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000523694		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
intron-intron	ENST00000540088	ENST00000510292		TCGA	RV	PRAD	TCGA-CH-5761-01A	RASSF3	chr12	65091347	+	PPP3CA	chr4	102269435	-
Frame-shit	ENST00000529163	ENST00000326195		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000529163	ENST00000376545		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000529163	ENST00000396515		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000457111		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000452530		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000416932		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000470464		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000419893		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000448939		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000457970		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000475528		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000457078		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000412443		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000546690		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000421608		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000486105		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000383588		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000383587		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000400609		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000485585		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000426219		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000421042		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000552867		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000454094		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000494413		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000423247		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000420257		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000456791		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000529163	ENST00000495194		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
In-frame	ENST00000394920	ENST00000326195		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
In-frame	ENST00000394920	ENST00000376545		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
In-frame	ENST00000394920	ENST00000396515		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000457111		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000452530		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000416932		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000470464		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000419893		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000448939		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000457970		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000475528		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000457078		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000412443		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000546690		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000421608		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000486105		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000383588		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000383587		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000400609		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000485585		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000426219		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000421042		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000552867		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000454094		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000494413		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000423247		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000420257		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000456791		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000394920	ENST00000495194		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000527914	ENST00000326195		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000527914	ENST00000376545		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000527914	ENST00000396515		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000457111		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000452530		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000416932		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000470464		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000419893		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000448939		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000457970		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000475528		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000457078		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000412443		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000546690		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000421608		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000486105		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000383588		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000383587		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000400609		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000485585		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000426219		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000421042		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000552867		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000454094		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000494413		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000423247		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000420257		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000456791		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000527914	ENST00000495194		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000262584	ENST00000326195		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000262584	ENST00000376545		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
Frame-shit	ENST00000262584	ENST00000396515		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000457111		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000452530		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000416932		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000470464		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000419893		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000448939		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000457970		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000475528		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000457078		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000412443		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000546690		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000421608		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000486105		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000383588		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000383587		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000400609		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000485585		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000426219		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000421042		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000552867		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000454094		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000494413		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000423247		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000420257		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000456791		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-intron	ENST00000262584	ENST00000495194		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000528957	ENST00000326195		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000528957	ENST00000376545		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000528957	ENST00000396515		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000457111		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000452530		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000416932		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000470464		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000419893		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000448939		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000457970		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000475528		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000457078		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000412443		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000546690		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000421608		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000486105		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000383588		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000383587		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000400609		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000485585		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000426219		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000421042		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000552867		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000454094		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000494413		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000423247		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000420257		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000456791		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000528957	ENST00000495194		TCGA	RV	PRAD	TCGA-HI-7168-01A	RPL8	chr8	146015154	-	ABCF1	chr6	30545853	+
5CDS-5UTR	ENST00000456518	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000456518	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000397174	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000397174	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000402904	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000402904	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000361191	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000361191	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000397171	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000397171	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000361705	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000361705	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000326197	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000326197	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000372595	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000372595	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000337495	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000337495	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000372596	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000372596	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000372597	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
5CDS-5UTR	ENST00000372597	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
intron-5UTR	ENST00000472037	ENST00000568606		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
intron-5UTR	ENST00000472037	ENST00000260324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	SCMH1	chr1	41536267	-	SQRDL	chr15	45951105	+
In-frame	ENST00000296589	ENST00000396496		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000296589	ENST00000396499		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000296589	ENST00000460090		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000296589	ENST00000383374		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000296589	ENST00000511257		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
intron-3CDS	ENST00000342059	ENST00000396496		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
intron-3CDS	ENST00000342059	ENST00000396499		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
intron-5UTR	ENST00000342059	ENST00000460090		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
intron-5UTR	ENST00000342059	ENST00000383374		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
intron-5UTR	ENST00000342059	ENST00000511257		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000382102	ENST00000396496		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000382102	ENST00000396499		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000382102	ENST00000460090		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000382102	ENST00000383374		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000382102	ENST00000511257		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000509381	ENST00000396496		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000509381	ENST00000396499		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000509381	ENST00000460090		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000509381	ENST00000383374		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000509381	ENST00000511257		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000345083	ENST00000396496		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
In-frame	ENST00000345083	ENST00000396499		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000345083	ENST00000460090		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000345083	ENST00000383374		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-5UTR	ENST00000345083	ENST00000511257		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	SLC45A2	chr5	33982341	-	CCDC125	chr5	68581294	-
5CDS-3UTR	ENST00000544865	ENST00000593699		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000544865	ENST00000372499		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000544865	ENST00000496424		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000263073	ENST00000593699		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000263073	ENST00000372499		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000263073	ENST00000496424		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000354901	ENST00000593699		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000354901	ENST00000372499		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000354901	ENST00000496424		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000536871	ENST00000593699		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000536871	ENST00000372499		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000536871	ENST00000496424		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000573166	ENST00000593699		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000573166	ENST00000372499		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000573166	ENST00000496424		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	SMG6	chr17	2075952	-	C10orf11	chr10	78316967	+
5UTR-5UTR	ENST00000278795	ENST00000497424		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000278795	ENST00000316562		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000278795	ENST00000610179		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-intron	ENST00000278795	ENST00000464452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000305958	ENST00000497424		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000305958	ENST00000316562		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000305958	ENST00000610179		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-intron	ENST00000305958	ENST00000464452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000339123	ENST00000497424		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000339123	ENST00000316562		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000339123	ENST00000610179		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-intron	ENST00000339123	ENST00000464452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
3UTR-5UTR	ENST00000484515	ENST00000497424		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
3UTR-5UTR	ENST00000484515	ENST00000316562		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
3UTR-5UTR	ENST00000484515	ENST00000610179		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
3UTR-intron	ENST00000484515	ENST00000464452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000346595	ENST00000497424		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000346595	ENST00000316562		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000346595	ENST00000610179		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-intron	ENST00000346595	ENST00000464452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
intron-5UTR	ENST00000379460	ENST00000497424		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
intron-5UTR	ENST00000379460	ENST00000316562		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
intron-5UTR	ENST00000379460	ENST00000610179		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
intron-intron	ENST00000379460	ENST00000464452		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	SMOX	chr20	4129624	+	PANK2	chr20	3888573	+
5UTR-5UTR	ENST00000434581	ENST00000446827		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000434581	ENST00000425432		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000434581	ENST00000313565		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000434581	ENST00000564134		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000434581	ENST00000565601		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000434581	ENST00000564943		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000334667	ENST00000446827		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000334667	ENST00000425432		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000334667	ENST00000313565		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000334667	ENST00000564134		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000334667	ENST00000565601		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000334667	ENST00000564943		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000519784	ENST00000446827		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000519784	ENST00000425432		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000519784	ENST00000313565		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000519784	ENST00000564134		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000519784	ENST00000565601		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000519784	ENST00000564943		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000523073	ENST00000446827		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000523073	ENST00000425432		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000523073	ENST00000313565		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000523073	ENST00000564134		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000523073	ENST00000565601		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000523073	ENST00000564943		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000521229	ENST00000446827		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000521229	ENST00000425432		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000521229	ENST00000313565		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000521229	ENST00000564134		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000521229	ENST00000565601		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
5UTR-5UTR	ENST00000521229	ENST00000564943		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-5UTR	ENST00000522576	ENST00000446827		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-5UTR	ENST00000522576	ENST00000425432		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-5UTR	ENST00000522576	ENST00000313565		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-5UTR	ENST00000522576	ENST00000564134		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-5UTR	ENST00000522576	ENST00000565601		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-5UTR	ENST00000522576	ENST00000564943		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMEM68	chr8	56685828	-	ZNF821	chr16	71913926	-
intron-intron	ENST00000332149	ENST00000371917		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000332149	ENST00000493140		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000398585	ENST00000371917		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000398585	ENST00000493140		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000458356	ENST00000371917		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000458356	ENST00000493140		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000497881	ENST00000371917		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000497881	ENST00000493140		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42837936	-	ARFGEF2	chr20	47615777	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5746-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I8-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-intron	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
In-frame	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
In-frame	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5CDS-5UTR	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5CDS-5UTR	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5CDS-5UTR	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5CDS-5UTR	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5CDS-intron	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
intron-intron	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42879877	-	ETV4	chr17	41622735	-
In-frame	ENST00000400301	ENST00000415576		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000400301	ENST00000343848		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000400301	ENST00000308268		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000308271	ENST00000415576		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000308271	ENST00000343848		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000308271	ENST00000308268		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
intron-3CDS	ENST00000374732	ENST00000415576		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
intron-3CDS	ENST00000374732	ENST00000343848		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
intron-3CDS	ENST00000374732	ENST00000308268		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000529637	ENST00000415576		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000529637	ENST00000343848		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000529637	ENST00000308268		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
intron-3CDS	ENST00000479177	ENST00000415576		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
intron-3CDS	ENST00000479177	ENST00000343848		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
intron-3CDS	ENST00000479177	ENST00000308268		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000421625	ENST00000415576		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000421625	ENST00000343848		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000421625	ENST00000308268		TCGA	RV	PRAD	TCGA-G9-6361-01A	USP48	chr1	22078000	-	PSMA8	chr18	23724523	+
In-frame	ENST00000462705	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000462705	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000462705	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000462705	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000393785	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000393785	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000393785	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000393785	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000481632	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000481632	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000481632	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000481632	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000471418	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000471418	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000471418	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000471418	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000357258	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000357258	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
In-frame	ENST00000357258	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000357258	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000464560	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000464560	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000464560	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000464560	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000488663	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000488663	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000488663	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000488663	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000474710	ENST00000486975		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000474710	ENST00000451576		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000474710	ENST00000064724		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000474710	ENST00000489485		TCGA	RV	PRAD	TCGA-HC-7211-01A	ZBTB20	chr3	114069121	-	CLDN11	chr3	170140951	+
intron-intron	ENST00000462705	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000462705	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000462705	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000393785	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000393785	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000393785	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000481632	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000481632	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000481632	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000471418	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000471418	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000471418	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
5UTR-intron	ENST00000357258	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
5UTR-intron	ENST00000357258	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
5UTR-intron	ENST00000357258	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000464560	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000464560	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000464560	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
5UTR-intron	ENST00000488663	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
5UTR-intron	ENST00000488663	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
5UTR-intron	ENST00000488663	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000474710	ENST00000539563		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000474710	ENST00000490035		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
intron-intron	ENST00000474710	ENST00000498645		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ZBTB20	chr3	114519948	-	LSAMP	chr3	116728221	-
Frame-shit	ENST00000336375	ENST00000373719		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
Frame-shit	ENST00000336375	ENST00000373701		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
5CDS-intron	ENST00000336375	ENST00000498566		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000475741	ENST00000373719		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000475741	ENST00000373701		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-intron	ENST00000475741	ENST00000498566		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000351273	ENST00000373719		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000351273	ENST00000373701		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-intron	ENST00000351273	ENST00000498566		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000489084	ENST00000373719		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000489084	ENST00000373701		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-intron	ENST00000489084	ENST00000498566		TCGA	RV	PRAD	TCGA-EJ-5512-01A	ACPP	chr3	132077596	+	OGT	chrX	70782980	+
intron-3CDS	ENST00000327435	ENST00000316059		TCGA	RV	PRAD	TCGA-EJ-5503-01A	ADI1	chr2	3502224	-	ZFP91	chr11	58380235	+
Frame-shit	ENST00000382093	ENST00000316059		TCGA	RV	PRAD	TCGA-EJ-5503-01A	ADI1	chr2	3502224	-	ZFP91	chr11	58380235	+
In-frame	ENST00000366987	ENST00000366943		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000366987	ENST00000307340		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
5CDS-intron	ENST00000366987	ENST00000366942		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000341491	ENST00000366943		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000341491	ENST00000307340		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
5CDS-intron	ENST00000341491	ENST00000366942		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000366985	ENST00000366943		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000366985	ENST00000307340		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
5CDS-intron	ENST00000366985	ENST00000366942		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
intron-3CDS	ENST00000492118	ENST00000366943		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
intron-3CDS	ENST00000492118	ENST00000307340		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
intron-intron	ENST00000492118	ENST00000366942		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000336937	ENST00000366943		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000336937	ENST00000307340		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
5CDS-intron	ENST00000336937	ENST00000366942		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000366983	ENST00000366943		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
In-frame	ENST00000366983	ENST00000307340		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
5CDS-intron	ENST00000366983	ENST00000366942		TCGA	RV	PRAD	TCGA-VN-A943-01A	ATF3	chr1	212791576	+	USH2A	chr1	216011445	-
Frame-shit	ENST00000380050	ENST00000205402		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
5CDS-intron	ENST00000380050	ENST00000537148		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
5CDS-intron	ENST00000380050	ENST00000440410		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
5CDS-intron	ENST00000380050	ENST00000437604		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
5CDS-3UTR	ENST00000380050	ENST00000494441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3CDS	ENST00000265741	ENST00000205402		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000265741	ENST00000537148		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000265741	ENST00000440410		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000265741	ENST00000437604		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3UTR	ENST00000265741	ENST00000494441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3CDS	ENST00000406263	ENST00000205402		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000406263	ENST00000537148		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000406263	ENST00000440410		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000406263	ENST00000437604		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3UTR	ENST00000406263	ENST00000494441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3CDS	ENST00000436577	ENST00000205402		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000436577	ENST00000537148		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000436577	ENST00000440410		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000436577	ENST00000437604		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3UTR	ENST00000436577	ENST00000494441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3CDS	ENST00000496279	ENST00000205402		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000496279	ENST00000537148		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000496279	ENST00000440410		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-intron	ENST00000496279	ENST00000437604		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
intron-3UTR	ENST00000496279	ENST00000494441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	CDK14	chr7	90233563	+	DLD	chr7	107542183	+
Frame-shit	ENST00000357992	ENST00000211998		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
Frame-shit	ENST00000357992	ENST00000372755		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5CDS-intron	ENST00000357992	ENST00000478896		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5CDS-intron	ENST00000357992	ENST00000417648		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
Frame-shit	ENST00000289703	ENST00000211998		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
Frame-shit	ENST00000289703	ENST00000372755		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5CDS-intron	ENST00000289703	ENST00000478896		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5CDS-intron	ENST00000289703	ENST00000417648		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5UTR-3CDS	ENST00000468523	ENST00000211998		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5UTR-3CDS	ENST00000468523	ENST00000372755		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5UTR-intron	ENST00000468523	ENST00000478896		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
5UTR-intron	ENST00000468523	ENST00000417648		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ELK4	chr1	205592804	-	VCL	chr10	75855414	+
Frame-shit	ENST00000470610	ENST00000446702		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000470610	ENST00000539053		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000470610	ENST00000350110		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000389672	ENST00000446702		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000389672	ENST00000539053		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000389672	ENST00000350110		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000542517	ENST00000446702		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000542517	ENST00000539053		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
Frame-shit	ENST00000542517	ENST00000350110		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000514100	ENST00000446702		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000514100	ENST00000539053		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000514100	ENST00000350110		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000502694	ENST00000446702		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000502694	ENST00000539053		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000502694	ENST00000350110		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000442602	ENST00000446702		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000442602	ENST00000539053		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
intron-3CDS	ENST00000442602	ENST00000350110		TCGA	RV	PRAD	TCGA-KK-A59X-01A	EPHA6	chr3	96585733	+	CNTN6	chr3	1443117	+
5CDS-intron	ENST00000409185	ENST00000528190		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000393389		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000528722		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000260047		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000526731		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000531895		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000393392		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000409185	ENST00000533342		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000528190		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000393389		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000528722		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000260047		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000526731		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000531895		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000393392		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5CDS-intron	ENST00000389915	ENST00000533342		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	FAM168B	chr2	131840150	-	ANKRD42	chr11	82935897	+
5UTR-3CDS	ENST00000381323	ENST00000399080		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FAM49A	chr2	16805132	-	RAD51AP2	chr2	17692222	-
intron-3CDS	ENST00000355549	ENST00000399080		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FAM49A	chr2	16805132	-	RAD51AP2	chr2	17692222	-
5UTR-3CDS	ENST00000406434	ENST00000399080		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	FAM49A	chr2	16805132	-	RAD51AP2	chr2	17692222	-
intron-3CDS	ENST00000415708	ENST00000371804		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000415708	ENST00000546318		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000428395	ENST00000371804		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000428395	ENST00000546318		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
Frame-shit	ENST00000241502	ENST00000371804		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
5CDS-5UTR	ENST00000241502	ENST00000546318		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000424384	ENST00000371804		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000424384	ENST00000546318		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000492360	ENST00000371804		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000492360	ENST00000546318		TCGA	RV	PRAD	TCGA-G9-6364-01A	FYTTD1	chr3	197476945	+	IFIT1	chr10	91162038	+
3UTR-intron	ENST00000378565	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000378565	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000378565	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000378565	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000378565	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000378565	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
3UTR-intron	ENST00000378565	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000398158		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000398165		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000359624		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000352178		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000398168		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000544202		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000378549	ENST00000470912		TCGA	RV	PRAD	TCGA-G9-6371-01A	ITM2B	chr13	48835524	+	CBS	chr21	44476011	-
In-frame	ENST00000397560	ENST00000355413		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
In-frame	ENST00000397560	ENST00000473247		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-intron	ENST00000397560	ENST00000495028		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-3UTR	ENST00000397560	ENST00000535825		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-intron	ENST00000397560	ENST00000492693		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
In-frame	ENST00000006967	ENST00000355413		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
In-frame	ENST00000006967	ENST00000473247		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-intron	ENST00000006967	ENST00000495028		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-3UTR	ENST00000006967	ENST00000535825		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-intron	ENST00000006967	ENST00000492693		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	JHDM1D	chr7	139876544	-	AGK	chr7	141349063	+
5CDS-5UTR	ENST00000535741	ENST00000357836		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000535741	ENST00000336751		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000535741	ENST00000497365		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-intron	ENST00000535741	ENST00000475797		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000510413	ENST00000357836		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000510413	ENST00000336751		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000510413	ENST00000497365		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-intron	ENST00000510413	ENST00000475797		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
intron-5UTR	ENST00000503716	ENST00000357836		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
intron-5UTR	ENST00000503716	ENST00000336751		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
intron-5UTR	ENST00000503716	ENST00000497365		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
intron-intron	ENST00000503716	ENST00000475797		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000357115	ENST00000357836		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000357115	ENST00000336751		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000357115	ENST00000497365		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-intron	ENST00000357115	ENST00000475797		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000507224	ENST00000357836		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000507224	ENST00000336751		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-5UTR	ENST00000507224	ENST00000497365		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
5CDS-intron	ENST00000507224	ENST00000475797		TCGA	RV	PRAD	TCGA-VN-A88N-01A	LRBA	chr4	151656410	-	HFE2	chr1	145415279	+
Frame-shit	ENST00000586178	ENST00000533895		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000586178	ENST00000424158		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000586178	ENST00000532779		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000586178	ENST00000399066		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000586178	ENST00000446070		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000528331		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000276646		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000528647		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000440310		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000433638		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000408908		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000408889		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000422135		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000419099		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000533065		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000586178	ENST00000533171		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000586178	ENST00000529175		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000586178	ENST00000529690		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000586178	ENST00000527707		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
In-frame	ENST00000415868	ENST00000533895		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
In-frame	ENST00000415868	ENST00000424158		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
In-frame	ENST00000415868	ENST00000532779		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
In-frame	ENST00000415868	ENST00000399066		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
In-frame	ENST00000415868	ENST00000446070		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000528331		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000276646		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000528647		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000440310		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000433638		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000408908		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000408889		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000422135		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000419099		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000533065		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000415868	ENST00000533171		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000415868	ENST00000529175		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000415868	ENST00000529690		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000415868	ENST00000527707		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000376381	ENST00000533895		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000376381	ENST00000424158		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000376381	ENST00000532779		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000376381	ENST00000399066		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
Frame-shit	ENST00000376381	ENST00000446070		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000528331		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000276646		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000528647		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000440310		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000433638		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000408908		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000408889		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000422135		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000419099		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000533065		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-5UTR	ENST00000376381	ENST00000533171		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000376381	ENST00000529175		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000376381	ENST00000529690		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
5CDS-intron	ENST00000376381	ENST00000527707		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000593259	ENST00000533895		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000593259	ENST00000424158		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000593259	ENST00000532779		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000593259	ENST00000399066		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000593259	ENST00000446070		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000528331		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000276646		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000528647		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000440310		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000433638		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000408908		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000408889		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000422135		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000419099		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000533065		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-5UTR	ENST00000593259	ENST00000533171		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-intron	ENST00000593259	ENST00000529175		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-intron	ENST00000593259	ENST00000529690		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-intron	ENST00000593259	ENST00000527707		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	MBTD1	chr17	49284249	-	SYBU	chr8	110631268	-
intron-3CDS	ENST00000477567	ENST00000407647		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-3CDS	ENST00000477567	ENST00000360113		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-3CDS	ENST00000477567	ENST00000406549		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-3CDS	ENST00000477567	ENST00000341313		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-3CDS	ENST00000477567	ENST00000403764		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-3CDS	ENST00000477567	ENST00000407854		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-3CDS	ENST00000477567	ENST00000471961		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000407647		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000360113		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000406549		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000341313		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000403764		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000407854		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
In-frame	ENST00000215743	ENST00000471961		TCGA	RV	PRAD	TCGA-V1-A8WN-01A	MMP11	chr22	24115165	+	GAS2L1	chr22	29706429	+
intron-intron	ENST00000322723	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-7123-01A	NCL	chr2	232319462	-	STAT6	chr12	57496773	-
intron-intron	ENST00000322723	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-7123-01A	NCL	chr2	232319462	-	STAT6	chr12	57496773	-
intron-intron	ENST00000322723	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-7123-01A	NCL	chr2	232319462	-	STAT6	chr12	57496773	-
intron-intron	ENST00000322723	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-7123-01A	NCL	chr2	232319462	-	STAT6	chr12	57496773	-
intron-intron	ENST00000322723	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-7123-01A	NCL	chr2	232319462	-	STAT6	chr12	57496773	-
intron-intron	ENST00000322723	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-7123-01A	NCL	chr2	232319462	-	STAT6	chr12	57496773	-
5UTR-3CDS	ENST00000438493	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
5UTR-3CDS	ENST00000452682	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
3UTR-3CDS	ENST00000498586	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
5UTR-3CDS	ENST00000430396	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
5UTR-3CDS	ENST00000374087	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
5UTR-3CDS	ENST00000414907	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
intron-3CDS	ENST00000344348	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
intron-3CDS	ENST00000374082	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
intron-3CDS	ENST00000443446	ENST00000298298		TCGA	RV	PRAD	TCGA-EJ-5497-01A	NCOA4	chr10	51565296	+	C10orf25	chr10	45495864	-
Frame-shit	ENST00000371714	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371714	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371714	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371714	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5CDS-intron	ENST00000371714	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371710	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371710	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371710	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000371710	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5CDS-intron	ENST00000371710	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000337809	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000337809	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000337809	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000337809	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5CDS-intron	ENST00000337809	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5UTR-3CDS	ENST00000435686	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5UTR-3CDS	ENST00000435686	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5UTR-3CDS	ENST00000435686	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5UTR-3CDS	ENST00000435686	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5UTR-intron	ENST00000435686	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000447887	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000447887	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000447887	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000447887	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5CDS-intron	ENST00000447887	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000453295	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000453295	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000453295	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000453295	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5CDS-intron	ENST00000453295	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000428468	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000428468	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000428468	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000428468	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
5CDS-intron	ENST00000428468	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000530544	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000530544	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000530544	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000530544	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-intron	ENST00000530544	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000531828	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000531828	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000531828	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000531828	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-intron	ENST00000531828	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000361556	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000361556	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000361556	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000361556	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-intron	ENST00000361556	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000473207	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000473207	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000473207	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000473207	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-intron	ENST00000473207	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000462759	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000462759	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000462759	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000462759	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-intron	ENST00000462759	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000486942	ENST00000507668		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000486942	ENST00000512972		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000486942	ENST00000509193		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-3CDS	ENST00000486942	ENST00000512721		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
intron-intron	ENST00000486942	ENST00000513907		TCGA	RV	PRAD	TCGA-CH-5771-01A	OSBPL9	chr1	52082893	+	SERINC5	chr5	79454785	-
Frame-shit	ENST00000331483	ENST00000369002		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000331483	ENST00000460009		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000576390	ENST00000369002		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-intron	ENST00000576390	ENST00000460009		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000439918	ENST00000369002		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-intron	ENST00000439918	ENST00000460009		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000472244	ENST00000369002		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-intron	ENST00000472244	ENST00000460009		TCGA	RV	PRAD	TCGA-HC-8256-01A	P4HB	chr17	79801037	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000340635	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000360047	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000507116	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
In-frame	ENST00000502484	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
In-frame	ENST00000502484	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
In-frame	ENST00000502484	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
5CDS-intron	ENST00000502484	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
Frame-shit	ENST00000546160	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
Frame-shit	ENST00000546160	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
Frame-shit	ENST00000546160	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
5CDS-intron	ENST00000546160	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000502575	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000358923	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503258	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000405755	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000317118	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000453022		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-3CDS	ENST00000503947	ENST00000545085		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	PRAD	TCGA-EJ-5521-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59943360	-
In-frame	ENST00000374820	ENST00000374837		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
In-frame	ENST00000374820	ENST00000360668		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
In-frame	ENST00000374820	ENST00000397709		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
5CDS-3UTR	ENST00000374820	ENST00000476428		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
Frame-shit	ENST00000452740	ENST00000374837		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
Frame-shit	ENST00000452740	ENST00000360668		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
Frame-shit	ENST00000452740	ENST00000397709		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
5CDS-3UTR	ENST00000452740	ENST00000476428		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
intron-3CDS	ENST00000480175	ENST00000374837		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
intron-3CDS	ENST00000480175	ENST00000360668		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
intron-3CDS	ENST00000480175	ENST00000397709		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
intron-3UTR	ENST00000480175	ENST00000476428		TCGA	RV	PRAD	TCGA-HC-7752-01A	PIGU	chr20	33162908	-	MAP1LC3A	chr20	33147151	+
Frame-shit	ENST00000228705	ENST00000197268		TCGA	RV	PRAD	TCGA-EJ-5524-01A	PPM1H	chr12	63131282	-	KIAA1467	chr12	13214509	+
5CDS-intron	ENST00000228705	ENST00000535974		TCGA	RV	PRAD	TCGA-EJ-5524-01A	PPM1H	chr12	63131282	-	KIAA1467	chr12	13214509	+
intron-3CDS	ENST00000551214	ENST00000197268		TCGA	RV	PRAD	TCGA-EJ-5524-01A	PPM1H	chr12	63131282	-	KIAA1467	chr12	13214509	+
intron-intron	ENST00000551214	ENST00000535974		TCGA	RV	PRAD	TCGA-EJ-5524-01A	PPM1H	chr12	63131282	-	KIAA1467	chr12	13214509	+
Frame-shit	ENST00000228705	ENST00000286574		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	PPM1H	chr12	63131282	-	WIF1	chr12	65462684	-
intron-3CDS	ENST00000551214	ENST00000286574		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	PPM1H	chr12	63131282	-	WIF1	chr12	65462684	-
In-frame	ENST00000306156	ENST00000338415		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRKCE	chr2	45879587	+	QPCT	chr2	37579932	+
5CDS-intron	ENST00000306156	ENST00000537448		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRKCE	chr2	45879587	+	QPCT	chr2	37579932	+
intron-3CDS	ENST00000467135	ENST00000338415		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRKCE	chr2	45879587	+	QPCT	chr2	37579932	+
intron-intron	ENST00000467135	ENST00000537448		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRKCE	chr2	45879587	+	QPCT	chr2	37579932	+
intron-3CDS	ENST00000394874	ENST00000338415		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRKCE	chr2	45879587	+	QPCT	chr2	37579932	+
intron-intron	ENST00000394874	ENST00000537448		TCGA	RV	PRAD	TCGA-XK-AAJA-01A	PRKCE	chr2	45879587	+	QPCT	chr2	37579932	+
Frame-shit	ENST00000274376	ENST00000312637		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000274376	ENST00000505792		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000456692	ENST00000312637		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000456692	ENST00000505792		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000512763	ENST00000312637		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000512763	ENST00000505792		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000506290	ENST00000312637		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000506290	ENST00000505792		TCGA	RV	PRAD	TCGA-ZG-A8QX-01A	RASA1	chr5	86649052	+	FAM174A	chr5	99897758	+
Frame-shit	ENST00000225688	ENST00000254950		TCGA	RV	PRAD	TCGA-HC-7737-01A	RASD1	chr17	17397751	-	VPS4A	chr16	69349911	+
5CDS-intron	ENST00000225688	ENST00000564399		TCGA	RV	PRAD	TCGA-HC-7737-01A	RASD1	chr17	17397751	-	VPS4A	chr16	69349911	+
intron-3CDS	ENST00000579152	ENST00000254950		TCGA	RV	PRAD	TCGA-HC-7737-01A	RASD1	chr17	17397751	-	VPS4A	chr16	69349911	+
intron-intron	ENST00000579152	ENST00000564399		TCGA	RV	PRAD	TCGA-HC-7737-01A	RASD1	chr17	17397751	-	VPS4A	chr16	69349911	+
Frame-shit	ENST00000376447	ENST00000346234		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	RASEF	chr9	85605306	-	OSTF1	chr9	77732420	+
intron-3CDS	ENST00000340717	ENST00000346234		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	RASEF	chr9	85605306	-	OSTF1	chr9	77732420	+
In-frame	ENST00000537330	ENST00000358767		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000537330	ENST00000546225		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000537330	ENST00000335894		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000537330	ENST00000360277		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
5CDS-intron	ENST00000537330	ENST00000512104		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
5CDS-intron	ENST00000537330	ENST00000560790		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-3CDS	ENST00000570891	ENST00000358767		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-3CDS	ENST00000570891	ENST00000546225		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-3CDS	ENST00000570891	ENST00000335894		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-3CDS	ENST00000570891	ENST00000360277		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-intron	ENST00000570891	ENST00000512104		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-intron	ENST00000570891	ENST00000560790		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000306801	ENST00000358767		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000306801	ENST00000546225		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000306801	ENST00000335894		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000306801	ENST00000360277		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
5CDS-intron	ENST00000306801	ENST00000512104		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
5CDS-intron	ENST00000306801	ENST00000560790		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000544334	ENST00000358767		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000544334	ENST00000546225		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000544334	ENST00000335894		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
In-frame	ENST00000544334	ENST00000360277		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
5CDS-intron	ENST00000544334	ENST00000512104		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
5CDS-intron	ENST00000544334	ENST00000560790		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
3UTR-3CDS	ENST00000575542	ENST00000358767		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
3UTR-3CDS	ENST00000575542	ENST00000546225		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
3UTR-3CDS	ENST00000575542	ENST00000335894		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
3UTR-3CDS	ENST00000575542	ENST00000360277		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
3UTR-intron	ENST00000575542	ENST00000512104		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
3UTR-intron	ENST00000575542	ENST00000560790		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	RPTOR	chr17	78829347	+	IQCH	chr15	67692452	+
intron-3CDS	ENST00000284136	ENST00000223073		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
intron-intron	ENST00000284136	ENST00000481788		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
intron-intron	ENST00000284136	ENST00000415472		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
5UTR-3CDS	ENST00000444867	ENST00000223073		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
5UTR-intron	ENST00000444867	ENST00000481788		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
5UTR-intron	ENST00000444867	ENST00000415472		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
intron-3CDS	ENST00000484038	ENST00000223073		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
intron-intron	ENST00000484038	ENST00000481788		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
intron-intron	ENST00000484038	ENST00000415472		TCGA	RV	PRAD	TCGA-CH-5788-01A	SEMA3D	chr7	84782924	-	RBM28	chr7	127979845	-
intron-3CDS	ENST00000314888	ENST00000346169		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000414031		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000392537		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000382330		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000350481		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000352767		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000427845		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000342981		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000319274		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000424196		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000411531		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000441154		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000434061		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000314888	ENST00000435046		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000346169		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000414031		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000392537		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000382330		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000350481		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000352767		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000427845		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000342981		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000319274		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000424196		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000411531		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000441154		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000434061		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000540444	ENST00000435046		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000346169		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000414031		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000392537		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000382330		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000350481		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000352767		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000427845		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000342981		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000319274		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000424196		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000411531		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000441154		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000434061		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000464379	ENST00000435046		TCGA	RV	PRAD	TCGA-HC-7213-01A	TLN1	chr9	35697334	-	EIF4G1	chr3	184042892	+
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5768-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5506-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88M-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A879-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WX-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-5UTR	ENST00000413465	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000413465	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000413465	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-3UTR	ENST00000413465	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000359597	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000359597	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000359597	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-3UTR	ENST00000359597	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000269305	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000269305	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000269305	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-3UTR	ENST00000269305	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000455263	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000455263	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000455263	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-3UTR	ENST00000455263	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000420246	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000420246	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000420246	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-3UTR	ENST00000420246	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000445888	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000445888	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-5UTR	ENST00000445888	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5UTR-3UTR	ENST00000445888	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000574684	ENST00000264042		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000574684	ENST00000545004		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-5UTR	ENST00000574684	ENST00000373287		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
intron-3UTR	ENST00000574684	ENST00000479427		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TP53	chr17	7590695	-	FARP2	chr2	242312499	+
5CDS-intron	ENST00000447632	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000447632	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000447632	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000447632	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000413473	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000413473	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000413473	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000413473	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262675	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262675	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262675	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262675	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000451380	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000451380	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000451380	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000451380	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371750	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371750	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371750	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371750	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371747	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371747	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371747	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000371747	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262676	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262676	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262676	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
5CDS-intron	ENST00000262676	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000530004	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000530004	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000530004	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000530004	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000534098	ENST00000487096		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000534098	ENST00000360840		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000534098	ENST00000605337		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
intron-intron	ENST00000534098	ENST00000336230		TCGA	RV	PRAD	TCGA-KK-A7AW-01A	TTC39A	chr1	51771649	-	MRPL37	chr1	54681814	+
Frame-shit	ENST00000203407	ENST00000264433		TCGA	RV	PRAD	TCGA-HC-7744-01A	UQCRC1	chr3	48636436	-	FNIP2	chr4	159750231	+
Frame-shit	ENST00000203407	ENST00000379346		TCGA	RV	PRAD	TCGA-HC-7744-01A	UQCRC1	chr3	48636436	-	FNIP2	chr4	159750231	+
5CDS-3UTR	ENST00000203407	ENST00000505445		TCGA	RV	PRAD	TCGA-HC-7744-01A	UQCRC1	chr3	48636436	-	FNIP2	chr4	159750231	+
intron-3CDS	ENST00000493806	ENST00000264433		TCGA	RV	PRAD	TCGA-HC-7744-01A	UQCRC1	chr3	48636436	-	FNIP2	chr4	159750231	+
intron-3CDS	ENST00000493806	ENST00000379346		TCGA	RV	PRAD	TCGA-HC-7744-01A	UQCRC1	chr3	48636436	-	FNIP2	chr4	159750231	+
intron-3UTR	ENST00000493806	ENST00000505445		TCGA	RV	PRAD	TCGA-HC-7744-01A	UQCRC1	chr3	48636436	-	FNIP2	chr4	159750231	+
Frame-shit	ENST00000540432	ENST00000349155		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
In-frame	ENST00000540432	ENST00000257566		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
Frame-shit	ENST00000354777	ENST00000349155		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
In-frame	ENST00000354777	ENST00000257566		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
Frame-shit	ENST00000262348	ENST00000349155		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
In-frame	ENST00000262348	ENST00000257566		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
Frame-shit	ENST00000370976	ENST00000349155		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
In-frame	ENST00000370976	ENST00000257566		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
intron-3CDS	ENST00000370971	ENST00000349155		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
intron-3CDS	ENST00000370971	ENST00000257566		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
intron-3CDS	ENST00000491811	ENST00000349155		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
intron-3CDS	ENST00000491811	ENST00000257566		TCGA	RV	PRAD	TCGA-EJ-5525-01A	WLS	chr1	68603463	-	TBX3	chr12	115110107	-
5CDS-intron	ENST00000336375	ENST00000300134		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336375	ENST00000538913		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336375	ENST00000543873		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336375	ENST00000556155		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336375	ENST00000537215		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000336375	ENST00000454075		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000475741	ENST00000300134		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000475741	ENST00000538913		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000475741	ENST00000543873		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000475741	ENST00000556155		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000475741	ENST00000537215		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000475741	ENST00000454075		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000351273	ENST00000300134		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000351273	ENST00000538913		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000351273	ENST00000543873		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000351273	ENST00000556155		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000351273	ENST00000537215		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000351273	ENST00000454075		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489084	ENST00000300134		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489084	ENST00000538913		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489084	ENST00000543873		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489084	ENST00000556155		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489084	ENST00000537215		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489084	ENST00000454075		TCGA	RV	PRAD	TCGA-G9-6499-01A	ACPP	chr3	132077596	+	STAT6	chr12	57496773	-
Frame-shit	ENST00000331925	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000331925	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000331925	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000331925	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000573283	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000573283	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000573283	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000573283	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000575842	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000575842	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000575842	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000575842	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000575087	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000575087	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000575087	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000575087	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-7736-01A	ACTG1	chr17	79476999	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000487273	ENST00000297313		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000487273	ENST00000344277		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000487273	ENST00000522225		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000487273	ENST00000276500		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000487273	ENST00000517405		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
Frame-shit	ENST00000466936	ENST00000297313		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000466936	ENST00000344277		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000466936	ENST00000522225		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000466936	ENST00000276500		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000466936	ENST00000517405		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
Frame-shit	ENST00000481513	ENST00000297313		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000481513	ENST00000344277		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000481513	ENST00000522225		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000481513	ENST00000276500		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-intron	ENST00000481513	ENST00000517405		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
intron-3CDS	ENST00000484143	ENST00000297313		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
intron-intron	ENST00000484143	ENST00000344277		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
intron-intron	ENST00000484143	ENST00000522225		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
intron-intron	ENST00000484143	ENST00000276500		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
intron-intron	ENST00000484143	ENST00000517405		TCGA	RV	PRAD	TCGA-EJ-5510-01A	ADAM9	chr8	38854679	+	RGS20	chr8	54791818	+
5CDS-5UTR	ENST00000299575	ENST00000332427		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
5CDS-5UTR	ENST00000299575	ENST00000537507		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
5CDS-intron	ENST00000299575	ENST00000540510		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000539819	ENST00000332427		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000539819	ENST00000537507		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-intron	ENST00000539819	ENST00000540510		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000564241	ENST00000332427		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000564241	ENST00000537507		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-intron	ENST00000564241	ENST00000540510		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000566488	ENST00000332427		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-5UTR	ENST00000566488	ENST00000537507		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
intron-intron	ENST00000566488	ENST00000540510		TCGA	RV	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12848445	-
In-frame	ENST00000437600	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
In-frame	ENST00000292538	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
In-frame	ENST00000393824	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
In-frame	ENST00000547394	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
In-frame	ENST00000360264	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
In-frame	ENST00000425244	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000292535	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000549414	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000556210	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000550008	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000546411	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000560541	ENST00000305135		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	CUX1	chr7	101459373	+	YEATS2	chr3	183490093	+
intron-3CDS	ENST00000380110	ENST00000003084		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000380110	ENST00000454343		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-intron	ENST00000380110	ENST00000608965		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000223951	ENST00000003084		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000223951	ENST00000454343		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-intron	ENST00000223951	ENST00000608965		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000544538	ENST00000003084		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000544538	ENST00000454343		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
5UTR-intron	ENST00000544538	ENST00000608965		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000397312	ENST00000003084		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000397312	ENST00000454343		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-intron	ENST00000397312	ENST00000608965		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000380117	ENST00000003084		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000380117	ENST00000454343		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-intron	ENST00000380117	ENST00000608965		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000462649	ENST00000003084		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000462649	ENST00000454343		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
intron-intron	ENST00000462649	ENST00000608965		TCGA	RV	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23821603	-	CFTR	chr7	117304742	+
In-frame	ENST00000361924	ENST00000536378		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000361924	ENST00000231790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000361924	ENST00000458205		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000361924	ENST00000539477		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000361924	ENST00000455445		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000361924	ENST00000435176		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
5CDS-intron	ENST00000361924	ENST00000492474		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-3CDS	ENST00000435830	ENST00000536378		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-3CDS	ENST00000435830	ENST00000231790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-3CDS	ENST00000435830	ENST00000458205		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-3CDS	ENST00000435830	ENST00000539477		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-3CDS	ENST00000435830	ENST00000455445		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-3CDS	ENST00000435830	ENST00000435176		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
3UTR-intron	ENST00000435830	ENST00000492474		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-3CDS	ENST00000444882	ENST00000536378		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-3CDS	ENST00000444882	ENST00000231790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-3CDS	ENST00000444882	ENST00000458205		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-3CDS	ENST00000444882	ENST00000539477		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-3CDS	ENST00000444882	ENST00000455445		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-3CDS	ENST00000444882	ENST00000435176		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
intron-intron	ENST00000444882	ENST00000492474		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000356847	ENST00000536378		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000356847	ENST00000231790		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000356847	ENST00000458205		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000356847	ENST00000539477		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000356847	ENST00000455445		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000356847	ENST00000435176		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
5CDS-intron	ENST00000356847	ENST00000492474		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	GOLGA4	chr3	37343823	+	MLH1	chr3	37058997	+
In-frame	ENST00000264235	ENST00000323116		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000264235	ENST00000493826		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000264235	ENST00000482794		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
In-frame	ENST00000316626	ENST00000323116		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000316626	ENST00000493826		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000316626	ENST00000482794		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
intron-3CDS	ENST00000473886	ENST00000323116		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
intron-intron	ENST00000473886	ENST00000493826		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
intron-intron	ENST00000473886	ENST00000482794		TCGA	RV	PRAD	TCGA-G9-6333-01A	GSK3B	chr3	119720893	-	ATP11B	chr3	182631649	+
In-frame	ENST00000283871	ENST00000350061		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
In-frame	ENST00000283871	ENST00000288139		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
In-frame	ENST00000283871	ENST00000422281		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5CDS-intron	ENST00000283871	ENST00000498251		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5CDS-intron	ENST00000283871	ENST00000540742		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5CDS-intron	ENST00000283871	ENST00000544977		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5UTR-3CDS	ENST00000488183	ENST00000350061		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5UTR-3CDS	ENST00000488183	ENST00000288139		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5UTR-3CDS	ENST00000488183	ENST00000422281		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5UTR-intron	ENST00000488183	ENST00000498251		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5UTR-intron	ENST00000488183	ENST00000540742		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5UTR-intron	ENST00000488183	ENST00000544977		TCGA	RV	PRAD	TCGA-EJ-5516-01A	HGD	chr3	120389274	-	CACNA1D	chr3	53777038	+
5CDS-intron	ENST00000325321	ENST00000270189		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000325321	ENST00000429089		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000325321	ENST00000220809		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000325321	ENST00000352041		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000325321	ENST00000519510		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000325321	ENST00000429710		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000325321	ENST00000524009		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000270189		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000429089		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000220809		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000352041		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000519510		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000429710		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000391810	ENST00000524009		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000270189		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000429089		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000220809		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000352041		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000519510		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000429710		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000358049	ENST00000524009		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000270189		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000429089		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000220809		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000352041		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000519510		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000429710		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
intron-intron	ENST00000597509	ENST00000524009		TCGA	RV	PRAD	TCGA-EJ-5526-01A	KLK2	chr19	51383822	+	PLAT	chr8	42051245	-
In-frame	ENST00000262430	ENST00000262370		TCGA	RV	PRAD	TCGA-EJ-5524-01A	MLYCD	chr16	83945972	+	MGRN1	chr16	4718266	+
In-frame	ENST00000262430	ENST00000415496		TCGA	RV	PRAD	TCGA-EJ-5524-01A	MLYCD	chr16	83945972	+	MGRN1	chr16	4718266	+
In-frame	ENST00000262430	ENST00000399577		TCGA	RV	PRAD	TCGA-EJ-5524-01A	MLYCD	chr16	83945972	+	MGRN1	chr16	4718266	+
In-frame	ENST00000262430	ENST00000588994		TCGA	RV	PRAD	TCGA-EJ-5524-01A	MLYCD	chr16	83945972	+	MGRN1	chr16	4718266	+
In-frame	ENST00000262430	ENST00000586183		TCGA	RV	PRAD	TCGA-EJ-5524-01A	MLYCD	chr16	83945972	+	MGRN1	chr16	4718266	+
5CDS-intron	ENST00000262430	ENST00000588015		TCGA	RV	PRAD	TCGA-EJ-5524-01A	MLYCD	chr16	83945972	+	MGRN1	chr16	4718266	+
In-frame	ENST00000400546	ENST00000298248		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
In-frame	ENST00000400546	ENST00000382812		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000400546	ENST00000480748		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
In-frame	ENST00000284894	ENST00000298248		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
In-frame	ENST00000284894	ENST00000382812		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
5CDS-intron	ENST00000284894	ENST00000480748		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
intron-3CDS	ENST00000535285	ENST00000298248		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
intron-3CDS	ENST00000535285	ENST00000382812		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
intron-intron	ENST00000535285	ENST00000480748		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
intron-3CDS	ENST00000486367	ENST00000298248		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
intron-3CDS	ENST00000486367	ENST00000382812		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
intron-intron	ENST00000486367	ENST00000480748		TCGA	RV	PRAD	TCGA-EJ-5512-01A	NCAM2	chr21	22370936	+	CRYL1	chr13	20978880	-
5UTR-3CDS	ENST00000367385	ENST00000368170		TCGA	RV	PRAD	TCGA-EJ-A8FS-01A	NEK7	chr1	198126406	+	CD1C	chr1	158260924	+
intron-3CDS	ENST00000538004	ENST00000368170		TCGA	RV	PRAD	TCGA-EJ-A8FS-01A	NEK7	chr1	198126406	+	CD1C	chr1	158260924	+
5UTR-3CDS	ENST00000367383	ENST00000368170		TCGA	RV	PRAD	TCGA-EJ-A8FS-01A	NEK7	chr1	198126406	+	CD1C	chr1	158260924	+
intron-3CDS	ENST00000417895	ENST00000368170		TCGA	RV	PRAD	TCGA-EJ-A8FS-01A	NEK7	chr1	198126406	+	CD1C	chr1	158260924	+
Frame-shit	ENST00000545260	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000545260	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000545693	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000545693	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000350537	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000350537	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000346874	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000346874	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000374789	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000374789	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000374790	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000374790	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000374794	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000374794	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000374788	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000374788	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
intron-3CDS	ENST00000466092	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
intron-intron	ENST00000466092	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000374776	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000374776	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000340077	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000340077	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
intron-3CDS	ENST00000544292	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
intron-intron	ENST00000544292	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
Frame-shit	ENST00000374773	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-intron	ENST00000374773	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
intron-3CDS	ENST00000374768	ENST00000268070		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
intron-intron	ENST00000374768	ENST00000559976		TCGA	RV	PRAD	TCGA-J4-A83I-01A	PARD3	chr10	34985246	-	ADAMTS17	chr15	100537794	-
5CDS-5UTR	ENST00000360540	ENST00000276480		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
5CDS-intron	ENST00000360540	ENST00000522102		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
intron-5UTR	ENST00000544451	ENST00000276480		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
intron-intron	ENST00000544451	ENST00000522102		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
5UTR-5UTR	ENST00000519559	ENST00000276480		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000519559	ENST00000522102		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
5CDS-5UTR	ENST00000522514	ENST00000276480		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
5CDS-intron	ENST00000522514	ENST00000522102		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
intron-5UTR	ENST00000521344	ENST00000276480		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
intron-intron	ENST00000521344	ENST00000522102		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PCMTD1	chr8	52758221	-	ST18	chr8	53142637	-
Frame-shit	ENST00000421351	ENST00000421587		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
Frame-shit	ENST00000421351	ENST00000318588		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
Frame-shit	ENST00000421351	ENST00000361962		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
Frame-shit	ENST00000421351	ENST00000378163		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
Frame-shit	ENST00000421351	ENST00000378158		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
Frame-shit	ENST00000421351	ENST00000378166		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
Frame-shit	ENST00000421351	ENST00000442742		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
5CDS-intron	ENST00000421351	ENST00000472704		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
5CDS-intron	ENST00000421351	ENST00000378154		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	PERP	chr6	138428264	-	CASK	chrX	41646536	-
5CDS-5UTR	ENST00000255882	ENST00000505489		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000255882	ENST00000321945		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000255882	ENST00000506553		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000255882	ENST00000515303		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000572273	ENST00000505489		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000572273	ENST00000321945		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000572273	ENST00000506553		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5CDS-5UTR	ENST00000572273	ENST00000515303		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000414196	ENST00000505489		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000414196	ENST00000321945		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000414196	ENST00000506553		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
intron-5UTR	ENST00000414196	ENST00000515303		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000466162	ENST00000505489		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000466162	ENST00000321945		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000466162	ENST00000506553		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
5UTR-5UTR	ENST00000466162	ENST00000515303		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PI4KA	chr22	21147481	-	FAM175A	chr4	84403397	-
Frame-shit	ENST00000315872	ENST00000306928		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ROCK2	chr2	11484122	-	NTSR2	chr2	11798848	-
intron-3CDS	ENST00000462366	ENST00000306928		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ROCK2	chr2	11484122	-	NTSR2	chr2	11798848	-
intron-3CDS	ENST00000401753	ENST00000306928		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ROCK2	chr2	11484122	-	NTSR2	chr2	11798848	-
5CDS-intron	ENST00000375759	ENST00000536782		TCGA	RV	PRAD	TCGA-HC-8265-01A	SPEN	chr1	16242774	+	TNFRSF1B	chr1	12262024	+
5CDS-3UTR	ENST00000375759	ENST00000492361		TCGA	RV	PRAD	TCGA-HC-8265-01A	SPEN	chr1	16242774	+	TNFRSF1B	chr1	12262024	+
5CDS-3UTR	ENST00000375759	ENST00000376259		TCGA	RV	PRAD	TCGA-HC-8265-01A	SPEN	chr1	16242774	+	TNFRSF1B	chr1	12262024	+
intron-intron	ENST00000471538	ENST00000536782		TCGA	RV	PRAD	TCGA-HC-8265-01A	SPEN	chr1	16242774	+	TNFRSF1B	chr1	12262024	+
intron-3UTR	ENST00000471538	ENST00000492361		TCGA	RV	PRAD	TCGA-HC-8265-01A	SPEN	chr1	16242774	+	TNFRSF1B	chr1	12262024	+
intron-3UTR	ENST00000471538	ENST00000376259		TCGA	RV	PRAD	TCGA-HC-8265-01A	SPEN	chr1	16242774	+	TNFRSF1B	chr1	12262024	+
Frame-shit	ENST00000409262	ENST00000252244		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TET3	chr2	74317174	+	KRT1	chr12	53072007	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8472-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7081-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-8198-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000379056	ENST00000404460		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000303908		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000409158		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000403716		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000234115		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000439822		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000487980		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000438882		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000538982		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000409612		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000379056	ENST00000409279		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000404460		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000303908		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000409158		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000403716		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000234115		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000439822		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000487980		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000438882		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000538982		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000409612		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000529421	ENST00000409279		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000404460		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000303908		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000409158		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000403716		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000234115		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000439822		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000487980		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000438882		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000538982		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000409612		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000530705	ENST00000409279		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000404460		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000303908		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000409158		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000403716		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000234115		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000439822		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000487980		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000438882		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000538982		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000409612		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379060	ENST00000409279		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000404460		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000303908		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000409158		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000403716		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000234115		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000439822		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000487980		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000438882		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000538982		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000409612		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000379055	ENST00000409279		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000404460		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000303908		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000409158		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000403716		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000234115		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000439822		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000487980		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000438882		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000538982		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000409612		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000309246	ENST00000409279		TCGA	RV	PRAD	TCGA-HC-A6HY-01A	TPT1	chr13	45911008	-	PLEKHB2	chr2	131876464	+
In-frame	ENST00000358465	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000358465	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000358465	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000358465	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000358465	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
In-frame	ENST00000369543	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000369543	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000450349	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
5CDS-intron	ENST00000450349	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000339438		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000438362		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000358528		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-3CDS	ENST00000476908	ENST00000261443		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000530886		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000369530		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000483407		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
intron-intron	ENST00000476908	ENST00000534699		TCGA	RV	PRAD	TCGA-CH-5751-01A	TRIM33	chr1	114945382	-	CSDE1	chr1	115282511	-
Frame-shit	ENST00000458659	ENST00000379161		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TSC22D1	chr13	45147299	-	NUFIP1	chr13	45540071	-
intron-3CDS	ENST00000501704	ENST00000379161		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TSC22D1	chr13	45147299	-	NUFIP1	chr13	45540071	-
intron-3CDS	ENST00000261489	ENST00000379161		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TSC22D1	chr13	45147299	-	NUFIP1	chr13	45540071	-
5UTR-3CDS	ENST00000460842	ENST00000379161		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TSC22D1	chr13	45147299	-	NUFIP1	chr13	45540071	-
Frame-shit	ENST00000374126	ENST00000381989		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF618	chr9	116638693	+	PARP4	chr13	25027792	-
5CDS-intron	ENST00000374126	ENST00000480576		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF618	chr9	116638693	+	PARP4	chr13	25027792	-
Frame-shit	ENST00000288466	ENST00000381989		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF618	chr9	116638693	+	PARP4	chr13	25027792	-
5CDS-intron	ENST00000288466	ENST00000480576		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF618	chr9	116638693	+	PARP4	chr13	25027792	-
intron-3CDS	ENST00000470105	ENST00000381989		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF618	chr9	116638693	+	PARP4	chr13	25027792	-
intron-intron	ENST00000470105	ENST00000480576		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF618	chr9	116638693	+	PARP4	chr13	25027792	-
In-frame	ENST00000409068	ENST00000409785		TCGA	RV	PRAD	TCGA-HC-7744-01A	AAK1	chr2	69870010	-	KCMF1	chr2	85255012	+
In-frame	ENST00000409085	ENST00000409785		TCGA	RV	PRAD	TCGA-HC-7744-01A	AAK1	chr2	69870010	-	KCMF1	chr2	85255012	+
In-frame	ENST00000406297	ENST00000409785		TCGA	RV	PRAD	TCGA-HC-7744-01A	AAK1	chr2	69870010	-	KCMF1	chr2	85255012	+
intron-3CDS	ENST00000470281	ENST00000409785		TCGA	RV	PRAD	TCGA-HC-7744-01A	AAK1	chr2	69870010	-	KCMF1	chr2	85255012	+
5UTR-3CDS	ENST00000432884	ENST00000355540		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
5UTR-3CDS	ENST00000432884	ENST00000359863		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
5UTR-3CDS	ENST00000432884	ENST00000446306		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
Frame-shit	ENST00000262942	ENST00000355540		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
Frame-shit	ENST00000262942	ENST00000359863		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
Frame-shit	ENST00000262942	ENST00000446306		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
intron-3CDS	ENST00000471960	ENST00000355540		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
intron-3CDS	ENST00000471960	ENST00000359863		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
intron-3CDS	ENST00000471960	ENST00000446306		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	ARPC1A	chr7	98931040	+	TRRAP	chr7	98579392	+
In-frame	ENST00000295598	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
In-frame	ENST00000295598	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000295598	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000295598	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000537345	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000537345	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000537345	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
Frame-shit	ENST00000369496	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000369496	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
5CDS-intron	ENST00000369496	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000421182		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000357867		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000323926		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000336916		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000354785		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000357009		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000346544		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000345488		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000359671		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000446046		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000443816		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000432072		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000491156	ENST00000356005		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-intron	ENST00000491156	ENST00000490833		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-intron	ENST00000491156	ENST00000426059		TCGA	RV	PRAD	TCGA-HC-7737-01A	ATP1A1	chr1	116947396	+	FN1	chr2	216274837	-
intron-3CDS	ENST00000389153	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-3CDS	ENST00000389153	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000389153	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000389153	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000389153	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000608853	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000608853	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000608853	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000608853	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000608853	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000377617	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000377617	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000377617	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000377617	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000377617	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-3CDS	ENST00000550104	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-3CDS	ENST00000550104	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000550104	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000550104	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000550104	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
Frame-shit	ENST00000542287	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
Frame-shit	ENST00000542287	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000542287	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000542287	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000542287	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000535949	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000535949	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000535949	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000535949	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
5CDS-intron	ENST00000535949	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-3CDS	ENST00000549455	ENST00000393066		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-3CDS	ENST00000549455	ENST00000262294		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000549455	ENST00000376149		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000549455	ENST00000393065		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
intron-intron	ENST00000549455	ENST00000584889		TCGA	RV	PRAD	TCGA-G9-6354-01A	ATXN2	chr12	111923075	-	TRIM37	chr17	57079075	-
In-frame	ENST00000246533	ENST00000278823		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
In-frame	ENST00000246533	ENST00000524902		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
In-frame	ENST00000246533	ENST00000527204		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000589146	ENST00000278823		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000589146	ENST00000524902		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000589146	ENST00000527204		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
Frame-shit	ENST00000587718	ENST00000278823		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
Frame-shit	ENST00000587718	ENST00000524902		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
Frame-shit	ENST00000587718	ENST00000527204		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000590874	ENST00000278823		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000590874	ENST00000524902		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000590874	ENST00000527204		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
In-frame	ENST00000588815	ENST00000278823		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
In-frame	ENST00000588815	ENST00000524902		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
In-frame	ENST00000588815	ENST00000527204		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000588780	ENST00000278823		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000588780	ENST00000524902		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
intron-3CDS	ENST00000588780	ENST00000527204		TCGA	RV	PRAD	TCGA-EJ-5506-01A	CAPNS1	chr19	36641254	+	MTA2	chr11	62363809	-
In-frame	ENST00000357674	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000357674	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000357674	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000357674	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000314062	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000314062	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000314062	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000314062	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000346964	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000346964	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000346964	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000346964	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000419354	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000419354	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000419354	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000419354	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-3CDS	ENST00000452595	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000452595	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000452595	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000452595	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000422288	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000422288	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000422288	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000422288	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000448528	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000448528	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000448528	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000448528	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-3CDS	ENST00000443183	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000443183	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000443183	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000443183	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000450955	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000450955	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000450955	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000450955	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
In-frame	ENST00000392382	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000392382	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000392382	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-intron	ENST00000392382	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-3CDS	ENST00000485409	ENST00000182096		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000485409	ENST00000485253		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000485409	ENST00000419587		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
intron-intron	ENST00000485409	ENST00000389622		TCGA	RV	PRAD	TCGA-KK-A59X-01A	DLG1	chr3	196921296	-	CRYBG3	chr3	97631011	+
5CDS-5UTR	ENST00000304698	ENST00000264170		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	FAM171B	chr2	187559138	+	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000304698	ENST00000375773		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	FAM171B	chr2	187559138	+	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000304698	ENST00000409512		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	FAM171B	chr2	187559138	+	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000304698	ENST00000410015		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	FAM171B	chr2	187559138	+	KYNU	chr2	143642918	+
5UTR-3CDS	ENST00000313833	ENST00000446450		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000313833	ENST00000354956		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
5UTR-3CDS	ENST00000313833	ENST00000354449		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
5UTR-intron	ENST00000313833	ENST00000469654		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000555087	ENST00000446450		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000555087	ENST00000354956		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000555087	ENST00000354449		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-intron	ENST00000555087	ENST00000469654		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000440021	ENST00000446450		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000440021	ENST00000354956		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-3CDS	ENST00000440021	ENST00000354449		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
intron-intron	ENST00000440021	ENST00000469654		TCGA	RV	PRAD	TCGA-V1-A8WL-01A	FBXO34	chr14	55738255	+	ATG7	chr3	11596285	+
In-frame	ENST00000265000	ENST00000262995		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
In-frame	ENST00000265000	ENST00000262994		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000265000	ENST00000505913		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
5CDS-intron	ENST00000265000	ENST00000515388		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
In-frame	ENST00000512285	ENST00000262995		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
In-frame	ENST00000512285	ENST00000262994		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
5CDS-5UTR	ENST00000512285	ENST00000505913		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
5CDS-intron	ENST00000512285	ENST00000515388		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
intron-3CDS	ENST00000502407	ENST00000262995		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
intron-3CDS	ENST00000502407	ENST00000262994		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
intron-5UTR	ENST00000502407	ENST00000505913		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
intron-intron	ENST00000502407	ENST00000515388		TCGA	RV	PRAD	TCGA-VN-A943-01A	GALNT7	chr4	174090112	+	GAB1	chr4	144336630	+
In-frame	ENST00000353258	ENST00000369093		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	GDE1	chr16	19528336	-	TIAL1	chr10	121347760	-
5CDS-intron	ENST00000353258	ENST00000463089		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	GDE1	chr16	19528336	-	TIAL1	chr10	121347760	-
5CDS-5UTR	ENST00000353258	ENST00000369092		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	GDE1	chr16	19528336	-	TIAL1	chr10	121347760	-
5CDS-5UTR	ENST00000353258	ENST00000436547		TCGA	RV	PRAD	TCGA-ZG-A9N3-01A	GDE1	chr16	19528336	-	TIAL1	chr10	121347760	-
5UTR-3CDS	ENST00000391854	ENST00000409598		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000424281		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000304527		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000455740		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000409252		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000514152		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000427414		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
5UTR-intron	ENST00000391854	ENST00000604030		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-3CDS	ENST00000450593	ENST00000409598		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000424281		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000304527		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000455740		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000409252		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000514152		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000427414		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000450593	ENST00000604030		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-3CDS	ENST00000366598	ENST00000409598		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000424281		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000304527		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000455740		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000409252		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000514152		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000427414		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366598	ENST00000604030		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-3CDS	ENST00000366597	ENST00000409598		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000424281		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000304527		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000455740		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000409252		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000514152		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000427414		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000366597	ENST00000604030		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-3CDS	ENST00000484517	ENST00000409598		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000424281		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000304527		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000455740		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000409252		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000514152		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000427414		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
intron-intron	ENST00000484517	ENST00000604030		TCGA	RV	PRAD	TCGA-EJ-7781-01A	GNG4	chr1	235812962	-	SH3D19	chr4	152086848	-
In-frame	ENST00000315266	ENST00000381269		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000315266	ENST00000356921		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000315266	ENST00000357887		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-5UTR	ENST00000315266	ENST00000216568		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000315266	ENST00000394330		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000315266	ENST00000528359		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000315266	ENST00000534137		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000315266	ENST00000533541		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000315266	ENST00000533899		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000478722	ENST00000381269		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000478722	ENST00000356921		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000478722	ENST00000357887		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-5UTR	ENST00000478722	ENST00000216568		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000478722	ENST00000394330		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000478722	ENST00000528359		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000478722	ENST00000534137		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000478722	ENST00000533541		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000478722	ENST00000533899		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-3CDS	ENST00000459628	ENST00000381269		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-3CDS	ENST00000459628	ENST00000356921		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-intron	ENST00000459628	ENST00000357887		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-5UTR	ENST00000459628	ENST00000216568		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-intron	ENST00000459628	ENST00000394330		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-intron	ENST00000459628	ENST00000528359		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-intron	ENST00000459628	ENST00000534137		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-intron	ENST00000459628	ENST00000533541		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
intron-intron	ENST00000459628	ENST00000533899		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000543237	ENST00000381269		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000543237	ENST00000356921		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000543237	ENST00000357887		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-5UTR	ENST00000543237	ENST00000216568		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000543237	ENST00000394330		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000543237	ENST00000528359		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000543237	ENST00000534137		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000543237	ENST00000533541		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000543237	ENST00000533899		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000305960	ENST00000381269		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000305960	ENST00000356921		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000305960	ENST00000357887		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-5UTR	ENST00000305960	ENST00000216568		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000305960	ENST00000394330		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000305960	ENST00000528359		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000305960	ENST00000534137		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000305960	ENST00000533541		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
5CDS-intron	ENST00000305960	ENST00000533899		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-3CDS	ENST00000544752	ENST00000381269		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-3CDS	ENST00000544752	ENST00000356921		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-intron	ENST00000544752	ENST00000357887		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-5UTR	ENST00000544752	ENST00000216568		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-intron	ENST00000544752	ENST00000394330		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-intron	ENST00000544752	ENST00000528359		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-intron	ENST00000544752	ENST00000534137		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-intron	ENST00000544752	ENST00000533541		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
3UTR-intron	ENST00000544752	ENST00000533899		TCGA	RV	PRAD	TCGA-HC-7232-01A	GPHN	chr14	67589094	+	SLC8A3	chr14	70527656	-
In-frame	ENST00000524189	ENST00000454498		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000524189	ENST00000332246		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000524189	ENST00000311540		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000524189	ENST00000522854		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000524189	ENST00000544602		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
5CDS-intron	ENST00000524189	ENST00000518542		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521515	ENST00000454498		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521515	ENST00000332246		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521515	ENST00000311540		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521515	ENST00000522854		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521515	ENST00000544602		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-intron	ENST00000521515	ENST00000518542		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000404075	ENST00000454498		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000404075	ENST00000332246		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000404075	ENST00000311540		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000404075	ENST00000522854		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000404075	ENST00000544602		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
intron-intron	ENST00000404075	ENST00000518542		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	KIF13B	chr8	28965656	-	CSGALNACT1	chr8	19266205	-
Frame-shit	ENST00000175091	ENST00000351193		TCGA	RV	PRAD	TCGA-VP-A875-01A	LAPTM4A	chr2	20232411	-	NMD3	chr3	160945105	+
Frame-shit	ENST00000175091	ENST00000472947		TCGA	RV	PRAD	TCGA-VP-A875-01A	LAPTM4A	chr2	20232411	-	NMD3	chr3	160945105	+
Frame-shit	ENST00000175091	ENST00000460469		TCGA	RV	PRAD	TCGA-VP-A875-01A	LAPTM4A	chr2	20232411	-	NMD3	chr3	160945105	+
5CDS-3UTR	ENST00000175091	ENST00000478160		TCGA	RV	PRAD	TCGA-VP-A875-01A	LAPTM4A	chr2	20232411	-	NMD3	chr3	160945105	+
5UTR-3CDS	ENST00000514342	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5UTR-intron	ENST00000514342	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5UTR-intron	ENST00000514342	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5UTR-intron	ENST00000514342	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000505697	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000505697	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000505697	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000505697	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
3UTR-3CDS	ENST00000511363	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
3UTR-intron	ENST00000511363	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
3UTR-intron	ENST00000511363	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
3UTR-intron	ENST00000511363	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000503750	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000503750	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000503750	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000503750	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000281631	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000281631	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000281631	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000281631	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000514067	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000514067	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000514067	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000514067	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000505554	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000505554	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000505554	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000505554	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000513738	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000513738	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000513738	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000513738	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000503665	ENST00000295822		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000503665	ENST00000460117		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000503665	ENST00000487522		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
5CDS-intron	ENST00000503665	ENST00000474096		TCGA	RV	PRAD	TCGA-EJ-5501-01A	PARP8	chr5	49963959	+	EIF5A2	chr3	170624882	-
Frame-shit	ENST00000371953	ENST00000327946		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	PTEN	chr10	89690846	+	GRID1	chr10	87489371	-
5CDS-5UTR	ENST00000371953	ENST00000536331		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	PTEN	chr10	89690846	+	GRID1	chr10	87489371	-
5CDS-intron	ENST00000371953	ENST00000552278		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	PTEN	chr10	89690846	+	GRID1	chr10	87489371	-
intron-3CDS	ENST00000472832	ENST00000327946		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	PTEN	chr10	89690846	+	GRID1	chr10	87489371	-
intron-5UTR	ENST00000472832	ENST00000536331		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	PTEN	chr10	89690846	+	GRID1	chr10	87489371	-
intron-intron	ENST00000472832	ENST00000552278		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	PTEN	chr10	89690846	+	GRID1	chr10	87489371	-
intron-3CDS	ENST00000413953	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000413953	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000413953	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3UTR	ENST00000413953	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3CDS	ENST00000347140	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3CDS	ENST00000347140	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3CDS	ENST00000347140	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3UTR	ENST00000347140	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000358907	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000358907	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000358907	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3UTR	ENST00000358907	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3CDS	ENST00000402412	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3CDS	ENST00000402412	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3CDS	ENST00000402412	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5UTR-3UTR	ENST00000402412	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000441731	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000441731	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000441731	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3UTR	ENST00000441731	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000403821	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000403821	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000403821	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3UTR	ENST00000403821	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000546843	ENST00000600132		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000546843	ENST00000318934		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3CDS	ENST00000546843	ENST00000262970		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
intron-3UTR	ENST00000546843	ENST00000595096		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	R3HDM2	chr12	57789532	-	ANKRD24	chr19	4212472	+
5CDS-5UTR	ENST00000372771	ENST00000434000		TCGA	RV	PRAD	TCGA-EJ-7784-01A	RLF	chr1	40627308	+	GPATCH8	chr17	42552271	-
5CDS-5UTR	ENST00000372771	ENST00000591680		TCGA	RV	PRAD	TCGA-EJ-7784-01A	RLF	chr1	40627308	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000372771	ENST00000586265		TCGA	RV	PRAD	TCGA-EJ-7784-01A	RLF	chr1	40627308	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000372771	ENST00000592154		TCGA	RV	PRAD	TCGA-EJ-7784-01A	RLF	chr1	40627308	+	GPATCH8	chr17	42552271	-
5CDS-intron	ENST00000372771	ENST00000588554		TCGA	RV	PRAD	TCGA-EJ-7784-01A	RLF	chr1	40627308	+	GPATCH8	chr17	42552271	-
5CDS-5UTR	ENST00000350148	ENST00000449823		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-5UTR	ENST00000350148	ENST00000440264		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000350148	ENST00000463403		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000350148	ENST00000418263		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000350148	ENST00000255465		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-5UTR	ENST00000379826	ENST00000449823		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-5UTR	ENST00000379826	ENST00000440264		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000379826	ENST00000463403		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000379826	ENST00000418263		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000379826	ENST00000255465		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
intron-5UTR	ENST00000483941	ENST00000449823		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
intron-5UTR	ENST00000483941	ENST00000440264		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
intron-3UTR	ENST00000483941	ENST00000463403		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
intron-3UTR	ENST00000483941	ENST00000418263		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
intron-3UTR	ENST00000483941	ENST00000255465		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-5UTR	ENST00000399275	ENST00000449823		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-5UTR	ENST00000399275	ENST00000440264		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000399275	ENST00000463403		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000399275	ENST00000418263		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
5CDS-3UTR	ENST00000399275	ENST00000255465		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SMAD9	chr13	37427556	-	CCNA1	chr13	37007170	+
In-frame	ENST00000393446	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000393446	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
5CDS-intron	ENST00000393446	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000265437	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000265437	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
5CDS-intron	ENST00000265437	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000393451	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000393451	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
5CDS-intron	ENST00000393451	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000393449	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000393449	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
5CDS-intron	ENST00000393449	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000323984	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
In-frame	ENST00000323984	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
5CDS-intron	ENST00000323984	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000432298	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000432298	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000432298	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000422922	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000422922	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000422922	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000487459	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000487459	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000487459	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000393443	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000393443	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000393443	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000393447	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000393447	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000393447	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000393444	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000393444	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000393444	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000465133	ENST00000393386		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-3CDS	ENST00000465133	ENST00000449182		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
intron-intron	ENST00000465133	ENST00000483028		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	ST7	chr7	116593745	+	PTPRZ1	chr7	121568210	+
Frame-shit	ENST00000539805	ENST00000202816		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TASP1	chr20	13610581	-	ESF1	chr20	13714489	-
5UTR-3CDS	ENST00000480436	ENST00000202816		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TASP1	chr20	13610581	-	ESF1	chr20	13714489	-
Frame-shit	ENST00000337743	ENST00000202816		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TASP1	chr20	13610581	-	ESF1	chr20	13714489	-
Frame-shit	ENST00000544472	ENST00000202816		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TASP1	chr20	13610581	-	ESF1	chr20	13714489	-
In-frame	ENST00000438423	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000438423	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000438423	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000438423	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000267811	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000267811	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000267811	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000267811	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000452095	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000452095	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000452095	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000452095	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000333725	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000333725	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000333725	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000333725	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000557843	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000557843	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000557843	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
In-frame	ENST00000557843	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000560764	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000560764	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000560764	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000560764	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000543579	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000543579	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000543579	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000543579	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000537840	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000537840	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000537840	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000537840	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000343827	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000343827	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000343827	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000343827	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559710	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559710	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559710	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559710	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559703	ENST00000602212		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559703	ENST00000602189		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559703	ENST00000449844		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
intron-3CDS	ENST00000559703	ENST00000439365		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TCF12	chr15	57213296	+	NPAS1	chr19	47542294	+
Frame-shit	ENST00000590602	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000590602	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000590602	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000590602	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000590602	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322933	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322933	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322933	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322933	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000322933	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5UTR-3CDS	ENST00000592076	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5UTR-3CDS	ENST00000592076	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5UTR-3CDS	ENST00000592076	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5UTR-3CDS	ENST00000592076	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5UTR-intron	ENST00000592076	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000392467	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000392467	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000392467	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000392467	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000392467	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322914	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322914	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322914	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000322914	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000322914	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000306591	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000306591	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000306591	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000306591	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000306591	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000591436	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000591436	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000591436	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
In-frame	ENST00000591436	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000591436	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000589553	ENST00000322954		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000589553	ENST00000539319		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000589553	ENST00000379983		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
Frame-shit	ENST00000589553	ENST00000560441		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5CDS-intron	ENST00000589553	ENST00000559183		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	TMC6	chr17	76118686	-	UACA	chr15	70970545	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5542-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A7NF-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6361-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000379056	ENST00000280653		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000379056	ENST00000471841		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
5CDS-intron	ENST00000379056	ENST00000263969		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000529421	ENST00000280653		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000529421	ENST00000471841		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000529421	ENST00000263969		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000530705	ENST00000280653		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000530705	ENST00000471841		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000530705	ENST00000263969		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000379060	ENST00000280653		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000379060	ENST00000471841		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000379060	ENST00000263969		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000379055	ENST00000280653		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000379055	ENST00000471841		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000379055	ENST00000263969		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000309246	ENST00000280653		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000309246	ENST00000471841		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-intron	ENST00000309246	ENST00000263969		TCGA	RV	PRAD	TCGA-EJ-7791-01A	TPT1	chr13	45911008	-	MFN1	chr3	179096011	+
intron-5UTR	ENST00000503191	ENST00000389131		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
intron-intron	ENST00000503191	ENST00000518472		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
5CDS-5UTR	ENST00000382020	ENST00000389131		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
5CDS-intron	ENST00000382020	ENST00000518472		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
5CDS-5UTR	ENST00000506802	ENST00000389131		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
5CDS-intron	ENST00000506802	ENST00000518472		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
intron-5UTR	ENST00000509380	ENST00000389131		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
intron-intron	ENST00000509380	ENST00000518472		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
5CDS-5UTR	ENST00000503731	ENST00000389131		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
5CDS-intron	ENST00000503731	ENST00000518472		TCGA	RV	PRAD	TCGA-HC-7210-01A	TUSC3	chr8	15601121	+	LOXL2	chr8	23225947	-
Frame-shit	ENST00000263228	ENST00000326245		TCGA	RV	PRAD	TCGA-HI-7168-01A	UBE2R2	chr9	33900269	+	ITLN1	chr1	160846606	-
5CDS-intron	ENST00000263228	ENST00000487531		TCGA	RV	PRAD	TCGA-HI-7168-01A	UBE2R2	chr9	33900269	+	ITLN1	chr1	160846606	-
5CDS-5UTR	ENST00000369577	ENST00000503581		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369577	ENST00000370621		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-intron	ENST00000369577	ENST00000370616		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369577	ENST00000393380		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369577	ENST00000342421		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000369577	ENST00000370618		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-intron	ENST00000369577	ENST00000486069		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000339907	ENST00000503581		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000339907	ENST00000370621		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-intron	ENST00000339907	ENST00000370616		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000339907	ENST00000393380		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000339907	ENST00000342421		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000339907	ENST00000370618		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-intron	ENST00000339907	ENST00000486069		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000392985	ENST00000503581		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000392985	ENST00000370621		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-intron	ENST00000392985	ENST00000370616		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000392985	ENST00000393380		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000392985	ENST00000342421		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000392985	ENST00000370618		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-intron	ENST00000392985	ENST00000486069		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000369578	ENST00000503581		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000369578	ENST00000370621		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-intron	ENST00000369578	ENST00000370616		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000369578	ENST00000393380		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000369578	ENST00000342421		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-5UTR	ENST00000369578	ENST00000370618		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
3UTR-intron	ENST00000369578	ENST00000486069		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	ZNF292	chr6	87865477	+	EYS	chr6	66205886	-
5CDS-5UTR	ENST00000336375	ENST00000457913		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000336375	ENST00000277225		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000336375	ENST00000441147		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000336375	ENST00000542028		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000336375	ENST00000497489		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000475741	ENST00000457913		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000475741	ENST00000277225		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000475741	ENST00000441147		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000475741	ENST00000542028		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000475741	ENST00000497489		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000351273	ENST00000457913		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000351273	ENST00000277225		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000351273	ENST00000441147		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000351273	ENST00000542028		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000351273	ENST00000497489		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-5UTR	ENST00000489084	ENST00000457913		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-5UTR	ENST00000489084	ENST00000277225		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-intron	ENST00000489084	ENST00000441147		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-intron	ENST00000489084	ENST00000542028		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-intron	ENST00000489084	ENST00000497489		TCGA	RV	PRAD	TCGA-G9-6498-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
In-frame	ENST00000371930	ENST00000361320		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ANKRD22	chr10	90611344	-	LRRTM3	chr10	68857345	+
5CDS-3UTR	ENST00000371930	ENST00000485868		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ANKRD22	chr10	90611344	-	LRRTM3	chr10	68857345	+
intron-3CDS	ENST00000476963	ENST00000361320		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ANKRD22	chr10	90611344	-	LRRTM3	chr10	68857345	+
intron-3UTR	ENST00000476963	ENST00000485868		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	ANKRD22	chr10	90611344	-	LRRTM3	chr10	68857345	+
Frame-shit	ENST00000383699	ENST00000425792		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
Frame-shit	ENST00000383699	ENST00000396703		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
Frame-shit	ENST00000407528	ENST00000425792		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
Frame-shit	ENST00000407528	ENST00000396703		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
intron-3CDS	ENST00000405615	ENST00000425792		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
intron-3CDS	ENST00000405615	ENST00000396703		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
3UTR-3CDS	ENST00000485126	ENST00000425792		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
3UTR-3CDS	ENST00000485126	ENST00000396703		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	CADM2	chr3	85008819	+	UBE2E2	chr3	23574045	+
In-frame	ENST00000392474	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000538733	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000337174	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000347034	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000324774	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000545538	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000545538	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000412367	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000404169	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000402834	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000446440	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000392473	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000535524	ENST00000377069		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000542973		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000377071		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000536437		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000538046		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	RV	PRAD	TCGA-EJ-A65J-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000300107	ENST00000352385		TCGA	RV	PRAD	TCGA-EJ-A8FS-01A	CLPX	chr15	65477413	-	IGDCC4	chr15	65686886	-
5CDS-intron	ENST00000300107	ENST00000558048		TCGA	RV	PRAD	TCGA-EJ-A8FS-01A	CLPX	chr15	65477413	-	IGDCC4	chr15	65686886	-
5CDS-5UTR	ENST00000540306	ENST00000354329		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000540306	ENST00000529578		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000540306	ENST00000533112		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000540306	ENST00000531253		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000540306	ENST00000527372		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000262415	ENST00000354329		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000262415	ENST00000529578		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000262415	ENST00000533112		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000262415	ENST00000531253		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000262415	ENST00000527372		TCGA	RV	PRAD	TCGA-CH-5768-01A	DHX8	chr17	41561553	+	MYO18A	chr17	27494039	-
Frame-shit	ENST00000426333	ENST00000226004		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000426333	ENST00000397937		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
5CDS-intron	ENST00000426333	ENST00000591618		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000592576	ENST00000226004		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000592576	ENST00000397937		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
5CDS-intron	ENST00000592576	ENST00000591618		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000591382	ENST00000226004		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000591382	ENST00000397937		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
5CDS-intron	ENST00000591382	ENST00000591618		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000402521	ENST00000226004		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000402521	ENST00000397937		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
5CDS-intron	ENST00000402521	ENST00000591618		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
intron-3CDS	ENST00000589211	ENST00000226004		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
intron-3CDS	ENST00000589211	ENST00000397937		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
intron-intron	ENST00000589211	ENST00000591618		TCGA	RV	PRAD	TCGA-HC-7209-01A	EFTUD2	chr17	42961017	-	DUSP3	chr17	41847182	-
Frame-shit	ENST00000302418	ENST00000541565		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000413764		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000391905		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000537898		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000545154		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000545781		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000308852		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000261458		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
Frame-shit	ENST00000302418	ENST00000367010		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
5CDS-5UTR	ENST00000302418	ENST00000367009		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000541565		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000413764		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000391905		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000537898		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000545154		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000545781		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000308852		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000261458		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-3CDS	ENST00000493889	ENST00000367010		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
intron-5UTR	ENST00000493889	ENST00000367009		TCGA	RV	PRAD	TCGA-VN-A88L-01A	KIF5B	chr10	32337392	-	HHAT	chr1	210637849	+
5UTR-3CDS	ENST00000349945	ENST00000534894		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000536810		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000545257		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000355995		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000543371		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000355717		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000538897		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000349937		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000369397		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000352065		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000349945	ENST00000369395		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-5UTR	ENST00000349945	ENST00000542695		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000349945	ENST00000369389		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000349945	ENST00000369386		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000349945	ENST00000466338		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000534894		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000536810		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000545257		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000355995		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000543371		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000355717		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000538897		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000349937		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000369397		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000352065		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432919	ENST00000369395		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000432919	ENST00000542695		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432919	ENST00000369389		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432919	ENST00000369386		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432919	ENST00000466338		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000534894		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000536810		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000545257		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000355995		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000543371		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000355717		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000538897		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000349937		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000369397		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000352065		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000354436	ENST00000369395		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000354436	ENST00000542695		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000354436	ENST00000369389		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000354436	ENST00000369386		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000354436	ENST00000466338		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000534894		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000536810		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000545257		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000355995		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000543371		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000355717		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000538897		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000349937		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000369397		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000352065		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000567239	ENST00000369395		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000567239	ENST00000542695		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000567239	ENST00000369389		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000567239	ENST00000369386		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000567239	ENST00000466338		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000534894		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000536810		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000545257		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000355995		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000543371		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000355717		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000538897		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000349937		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000369397		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000352065		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000393742	ENST00000369395		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-5UTR	ENST00000393742	ENST00000542695		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000393742	ENST00000369389		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000393742	ENST00000369386		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000393742	ENST00000466338		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000534894		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000536810		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000545257		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000355995		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000543371		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000355717		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000538897		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000349937		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000369397		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000352065		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000566899	ENST00000369395		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-5UTR	ENST00000566899	ENST00000542695		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000566899	ENST00000369389		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000566899	ENST00000369386		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
5UTR-intron	ENST00000566899	ENST00000466338		TCGA	RV	PRAD	TCGA-HC-7209-01A	NFAT5	chr16	69600277	+	TCF7L2	chr10	114900943	+
In-frame	ENST00000278886	ENST00000334982		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-3UTR	ENST00000278886	ENST00000484480		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-3UTR	ENST00000278886	ENST00000310450		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-3UTR	ENST00000278886	ENST00000398602		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
In-frame	ENST00000422516	ENST00000334982		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-3UTR	ENST00000422516	ENST00000484480		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-3UTR	ENST00000422516	ENST00000310450		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-3UTR	ENST00000422516	ENST00000398602		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
intron-3CDS	ENST00000464285	ENST00000334982		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
intron-3UTR	ENST00000464285	ENST00000484480		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
intron-3UTR	ENST00000464285	ENST00000310450		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
intron-3UTR	ENST00000464285	ENST00000398602		TCGA	RV	PRAD	TCGA-G9-6351-01A	NINL	chr20	25507044	-	NAA20	chr20	20007428	+
5CDS-intron	ENST00000331483	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-5525-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-3CDS	ENST00000400520	ENST00000409532		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
intron-3CDS	ENST00000400520	ENST00000264107		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
intron-3CDS	ENST00000400520	ENST00000343713		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
intron-3CDS	ENST00000400520	ENST00000264106		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
intron-3CDS	ENST00000400520	ENST00000375221		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
intron-3CDS	ENST00000400520	ENST00000409080		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
Frame-shit	ENST00000496748	ENST00000409532		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
Frame-shit	ENST00000496748	ENST00000264107		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
Frame-shit	ENST00000496748	ENST00000343713		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
Frame-shit	ENST00000496748	ENST00000264106		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
Frame-shit	ENST00000496748	ENST00000375221		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
Frame-shit	ENST00000496748	ENST00000409080		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000375111	ENST00000409532		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000375111	ENST00000264107		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000375111	ENST00000343713		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000375111	ENST00000264106		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000375111	ENST00000375221		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000375111	ENST00000409080		TCGA	RV	PRAD	TCGA-G9-6348-01A	PLA2G2A	chr1	20301931	-	ITGA6	chr2	173351992	+
In-frame	ENST00000313010	ENST00000533486		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000313010	ENST00000534141		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000313010	ENST00000260056		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000313010	ENST00000527633		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000313010	ENST00000525117		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000313010	ENST00000532548		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000533486		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000534141		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000260056		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
In-frame	ENST00000393399	ENST00000527633		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000393399	ENST00000525117		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-intron	ENST00000393399	ENST00000532548		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000533486		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000534141		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000260056		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000535099	ENST00000527633		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000535099	ENST00000525117		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000535099	ENST00000532548		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000533486		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000534141		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000260056		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-3CDS	ENST00000525772	ENST00000527633		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000525772	ENST00000525117		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
intron-intron	ENST00000525772	ENST00000532548		TCGA	RV	PRAD	TCGA-EJ-8468-01A	PRCP	chr11	82611277	-	RAB30	chr11	82705164	-
5CDS-5UTR	ENST00000325748	ENST00000348405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000513858		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000395310		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-intron	ENST00000325748	ENST00000443462		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000509142		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000326950		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000432794		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000311785		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000448323		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000505472		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000500777		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000508502		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000355196		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-intron	ENST00000325748	ENST00000264405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000505984		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000508479		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5CDS-5UTR	ENST00000325748	ENST00000436790		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000348405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000513858		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000395310		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-intron	ENST00000438687	ENST00000443462		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000509142		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000326950		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000432794		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000311785		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000448323		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000505472		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000500777		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000508502		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000355196		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-intron	ENST00000438687	ENST00000264405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000505984		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000508479		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000438687	ENST00000436790		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000348405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000513858		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000395310		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-intron	ENST00000487082	ENST00000443462		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000509142		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000326950		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000432794		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000311785		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000448323		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000505472		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000500777		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000508502		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000355196		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-intron	ENST00000487082	ENST00000264405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000505984		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000508479		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000487082	ENST00000436790		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000348405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000513858		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000395310		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-intron	ENST00000432031	ENST00000443462		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000509142		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000326950		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000432794		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000311785		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000448323		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000505472		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000500777		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000508502		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000355196		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-intron	ENST00000432031	ENST00000264405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000505984		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000508479		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
intron-5UTR	ENST00000432031	ENST00000436790		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000348405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000513858		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000395310		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-intron	ENST00000470200	ENST00000443462		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000509142		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000326950		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000432794		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000311785		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000448323		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000505472		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000500777		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000508502		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000355196		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-intron	ENST00000470200	ENST00000264405		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000505984		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000508479		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
5UTR-5UTR	ENST00000470200	ENST00000436790		TCGA	RV	PRAD	TCGA-HC-7081-01A	PRKRA	chr2	179315693	-	SEC31A	chr4	83803093	-
Frame-shit	ENST00000345843	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000345843	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000345843	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000342295	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000342295	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000342295	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000361572	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000361572	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000361572	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000348160	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000348160	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000348160	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000355476	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000355476	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000355476	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000511401	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000511401	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000511401	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000507561	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000507561	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000507561	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000504907	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000504907	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000504907	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
Frame-shit	ENST00000342320	ENST00000378611		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000342320	ENST00000299578		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
5CDS-intron	ENST00000342320	ENST00000444657		TCGA	RV	PRAD	TCGA-EJ-5527-01A	RBPJ	chr4	26417262	+	C16orf46	chr16	81087699	-
In-frame	ENST00000357277	ENST00000380122		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
In-frame	ENST00000357277	ENST00000398155		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
5CDS-intron	ENST00000357277	ENST00000485153		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
In-frame	ENST00000303843	ENST00000380122		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
In-frame	ENST00000303843	ENST00000398155		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
5CDS-intron	ENST00000303843	ENST00000485153		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
In-frame	ENST00000380064	ENST00000380122		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
In-frame	ENST00000380064	ENST00000398155		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
5CDS-intron	ENST00000380064	ENST00000485153		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
3UTR-3CDS	ENST00000469714	ENST00000380122		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
3UTR-3CDS	ENST00000469714	ENST00000398155		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
3UTR-intron	ENST00000469714	ENST00000485153		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	REPS2	chrX	17152030	+	TXLNG	chrX	16852406	+
In-frame	ENST00000369838	ENST00000274901		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
In-frame	ENST00000369838	ENST00000398661		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
5CDS-intron	ENST00000369838	ENST00000370850		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
5CDS-intron	ENST00000369838	ENST00000508459		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
5CDS-intron	ENST00000369838	ENST00000308161		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
5CDS-intron	ENST00000369838	ENST00000428842		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
5CDS-intron	ENST00000369838	ENST00000358072		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
5CDS-intron	ENST00000369838	ENST00000507223		TCGA	RV	PRAD	TCGA-EJ-7782-01A	SH3BGRL2	chr6	80341223	+	HMGCLL1	chr6	55381401	-
In-frame	ENST00000264485	ENST00000337414		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000264485	ENST00000380718		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000264485	ENST00000380732		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000264485	ENST00000534860		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000264485	ENST00000380736		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000264485	ENST00000303025		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000264485	ENST00000413512		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000264485	ENST00000491514		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000425175	ENST00000337414		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000425175	ENST00000380718		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000425175	ENST00000380732		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000425175	ENST00000534860		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000425175	ENST00000380736		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000425175	ENST00000303025		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000425175	ENST00000413512		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000425175	ENST00000491514		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000351898	ENST00000337414		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000351898	ENST00000380718		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000351898	ENST00000380732		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000351898	ENST00000534860		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000351898	ENST00000380736		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000351898	ENST00000303025		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000351898	ENST00000413512		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000351898	ENST00000491514		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000340595	ENST00000337414		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000340595	ENST00000380718		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000340595	ENST00000380732		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000340595	ENST00000534860		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000340595	ENST00000380736		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000340595	ENST00000303025		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000340595	ENST00000413512		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000340595	ENST00000491514		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-3CDS	ENST00000514331	ENST00000337414		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-3CDS	ENST00000514331	ENST00000380718		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-3CDS	ENST00000514331	ENST00000380732		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-3CDS	ENST00000514331	ENST00000534860		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-5UTR	ENST00000514331	ENST00000380736		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-5UTR	ENST00000514331	ENST00000303025		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-5UTR	ENST00000514331	ENST00000413512		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
3UTR-intron	ENST00000514331	ENST00000491514		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000512686	ENST00000337414		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000512686	ENST00000380718		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000512686	ENST00000380732		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000512686	ENST00000534860		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000512686	ENST00000380736		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000512686	ENST00000303025		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000512686	ENST00000413512		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000512686	ENST00000491514		TCGA	RV	PRAD	TCGA-M7-A725-01A	SLC4A4	chr4	72263370	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000389467	ENST00000502492		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
In-frame	ENST00000389467	ENST00000290330		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
5CDS-intron	ENST00000389467	ENST00000514089		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
In-frame	ENST00000446231	ENST00000502492		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
In-frame	ENST00000446231	ENST00000290330		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
5CDS-intron	ENST00000446231	ENST00000514089		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
intron-3CDS	ENST00000565224	ENST00000502492		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
intron-3CDS	ENST00000565224	ENST00000290330		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
intron-intron	ENST00000565224	ENST00000514089		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
5UTR-3CDS	ENST00000567737	ENST00000502492		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
5UTR-3CDS	ENST00000567737	ENST00000290330		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
5UTR-intron	ENST00000567737	ENST00000514089		TCGA	RV	PRAD	TCGA-XJ-A9DK-01A	SMG1	chr16	18937272	-	SNF8	chr17	47018424	-
In-frame	ENST00000585421	ENST00000537677		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000585421	ENST00000325542		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000585421	ENST00000325486		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000585421	ENST00000538658		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000585421	ENST00000541150		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
5CDS-intron	ENST00000585421	ENST00000536587		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000536189	ENST00000537677		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000536189	ENST00000325542		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000536189	ENST00000325486		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000536189	ENST00000538658		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000536189	ENST00000541150		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
5CDS-intron	ENST00000536189	ENST00000536587		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000262768	ENST00000537677		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000262768	ENST00000325542		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000262768	ENST00000325486		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000262768	ENST00000538658		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
Frame-shit	ENST00000262768	ENST00000541150		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
5CDS-intron	ENST00000262768	ENST00000536587		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000586057	ENST00000537677		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000586057	ENST00000325542		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000586057	ENST00000325486		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000586057	ENST00000538658		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
In-frame	ENST00000586057	ENST00000541150		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
5CDS-intron	ENST00000586057	ENST00000536587		TCGA	RV	PRAD	TCGA-G9-6499-01A	TIMP2	chr17	76849059	-	CEP57	chr11	95551991	+
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000513000		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000332149	ENST00000509777		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000332149	ENST00000262992		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000332149	ENST00000308502		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000332149	ENST00000508116		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000332149	ENST00000507861		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000332149	ENST00000506217		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000332149	ENST00000508084		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000398585	ENST00000513000		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000398585	ENST00000509777		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000398585	ENST00000262992		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000398585	ENST00000308502		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000398585	ENST00000508116		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5CDS-intron	ENST00000398585	ENST00000507861		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5CDS-intron	ENST00000398585	ENST00000506217		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5CDS-intron	ENST00000398585	ENST00000508084		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000458356	ENST00000513000		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000458356	ENST00000509777		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000458356	ENST00000262992		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000458356	ENST00000308502		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000458356	ENST00000508116		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000458356	ENST00000507861		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000458356	ENST00000506217		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000458356	ENST00000508084		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000497881	ENST00000513000		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000497881	ENST00000509777		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000497881	ENST00000262992		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000497881	ENST00000308502		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000497881	ENST00000508116		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000497881	ENST00000507861		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000497881	ENST00000506217		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000497881	ENST00000508084		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42879877	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000324695	ENST00000264485		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000324695	ENST00000425175		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000324695	ENST00000351898		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000324695	ENST00000340595		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
5CDS-3UTR	ENST00000324695	ENST00000514331		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
5CDS-3UTR	ENST00000324695	ENST00000512686		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000433712	ENST00000264485		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000433712	ENST00000425175		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000433712	ENST00000351898		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
Frame-shit	ENST00000433712	ENST00000340595		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
5CDS-3UTR	ENST00000433712	ENST00000514331		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
5CDS-3UTR	ENST00000433712	ENST00000512686		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000355722	ENST00000264485		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000355722	ENST00000425175		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000355722	ENST00000351898		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000355722	ENST00000340595		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3UTR	ENST00000355722	ENST00000514331		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3UTR	ENST00000355722	ENST00000512686		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000409625	ENST00000264485		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000409625	ENST00000425175		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000409625	ENST00000351898		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000409625	ENST00000340595		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3UTR	ENST00000409625	ENST00000514331		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3UTR	ENST00000409625	ENST00000512686		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000466594	ENST00000264485		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000466594	ENST00000425175		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000466594	ENST00000351898		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3CDS	ENST00000466594	ENST00000340595		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3UTR	ENST00000466594	ENST00000514331		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
intron-3UTR	ENST00000466594	ENST00000512686		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TRPM8	chr2	234905160	+	SLC4A4	chr4	72306333	+
In-frame	ENST00000323037	ENST00000242067		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
In-frame	ENST00000323037	ENST00000355070		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
In-frame	ENST00000323037	ENST00000350941		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
In-frame	ENST00000323037	ENST00000354265		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
In-frame	ENST00000323037	ENST00000396127		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
In-frame	ENST00000323037	ENST00000425508		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
5CDS-intron	ENST00000323037	ENST00000482941		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-3CDS	ENST00000459998	ENST00000242067		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-3CDS	ENST00000459998	ENST00000355070		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-3CDS	ENST00000459998	ENST00000350941		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-3CDS	ENST00000459998	ENST00000354265		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-3CDS	ENST00000459998	ENST00000396127		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-3CDS	ENST00000459998	ENST00000425508		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
intron-intron	ENST00000459998	ENST00000482941		TCGA	RV	PRAD	TCGA-V1-A9ZK-01A	ZNRF2	chr7	30395449	+	BBS9	chr7	33303902	+
Frame-shit	ENST00000230036	ENST00000504592		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
Frame-shit	ENST00000230036	ENST00000322953		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
Frame-shit	ENST00000230036	ENST00000428908		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
Frame-shit	ENST00000230036	ENST00000508653		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
Frame-shit	ENST00000230036	ENST00000444316		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5CDS-intron	ENST00000230036	ENST00000510950		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5UTR-3CDS	ENST00000474784	ENST00000504592		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5UTR-3CDS	ENST00000474784	ENST00000322953		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5UTR-3CDS	ENST00000474784	ENST00000428908		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5UTR-3CDS	ENST00000474784	ENST00000508653		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5UTR-3CDS	ENST00000474784	ENST00000444316		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
5UTR-intron	ENST00000474784	ENST00000510950		TCGA	RV	PRAD	TCGA-HC-7209-01A	GPLD1	chr6	24486303	-	BANK1	chr4	102776192	+
In-frame	ENST00000293618	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000293618	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000293618	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000429001	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000429001	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000429001	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000398473	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000398473	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000398473	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000518444	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000518444	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000518444	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000347328	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000347328	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000347328	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000522085	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000522085	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000522085	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000518561	ENST00000289004		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
In-frame	ENST00000518561	ENST00000543163		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000518561	ENST00000543869		TCGA	RV	PRAD	TCGA-YL-A8HO-01A	LARP4	chr12	50824353	+	HPD	chr12	122285120	-
5CDS-5UTR	ENST00000541515	ENST00000393008		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	LUC7L2	chr7	139060902	+	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000541515	ENST00000324787		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	LUC7L2	chr7	139060902	+	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000541515	ENST00000472343		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	LUC7L2	chr7	139060902	+	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000541515	ENST00000496958		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	LUC7L2	chr7	139060902	+	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000541515	ENST00000469351		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	LUC7L2	chr7	139060902	+	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000541515	ENST00000467334		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	LUC7L2	chr7	139060902	+	MRPS33	chr7	140710460	-
intron-3CDS	ENST00000509990	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000509990	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000509990	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000509990	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000361059	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000361059	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000361059	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000361059	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000504203	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000504203	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000504203	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000504203	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000502929	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000502929	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000502929	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000502929	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000394800	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-3CDS	ENST00000394800	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000394800	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
5UTR-intron	ENST00000394800	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
3UTR-3CDS	ENST00000507197	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
3UTR-3CDS	ENST00000507197	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
3UTR-intron	ENST00000507197	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
3UTR-intron	ENST00000507197	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000394805	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000394805	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000394805	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000394805	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000502499	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000502499	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000502499	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000502499	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000510056	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000510056	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000510056	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000510056	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000503811	ENST00000314358		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-3CDS	ENST00000503811	ENST00000394866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000503811	ENST00000542866		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
intron-intron	ENST00000503811	ENST00000508386		TCGA	RV	PRAD	TCGA-EJ-5515-01A	MATR3	chr5	138614097	+	KDM3B	chr5	137726702	+
Frame-shit	ENST00000261413	ENST00000606613		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5CDS-intron	ENST00000261413	ENST00000396980		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5UTR-3CDS	ENST00000457646	ENST00000606613		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5UTR-intron	ENST00000457646	ENST00000396980		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
Frame-shit	ENST00000513900	ENST00000606613		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5CDS-intron	ENST00000513900	ENST00000396980		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5UTR-3CDS	ENST00000515404	ENST00000606613		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5UTR-intron	ENST00000515404	ENST00000396980		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
intron-3CDS	ENST00000522562	ENST00000606613		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
intron-intron	ENST00000522562	ENST00000396980		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
Frame-shit	ENST00000522095	ENST00000606613		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
5CDS-intron	ENST00000522095	ENST00000396980		TCGA	RV	PRAD	TCGA-EJ-5516-01A	MRPS27	chr5	71609908	-	HIST1H2BN	chr6	27809342	+
In-frame	ENST00000355029	ENST00000289416		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5CDS-intron	ENST00000355029	ENST00000440284		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5CDS-intron	ENST00000355029	ENST00000450120		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5CDS-3UTR	ENST00000355029	ENST00000567387		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5UTR-3CDS	ENST00000542715	ENST00000289416		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5UTR-intron	ENST00000542715	ENST00000440284		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5UTR-intron	ENST00000542715	ENST00000450120		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
5UTR-3UTR	ENST00000542715	ENST00000567387		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-3CDS	ENST00000380359	ENST00000289416		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-intron	ENST00000380359	ENST00000440284		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-intron	ENST00000380359	ENST00000450120		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-3UTR	ENST00000380359	ENST00000567387		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-3CDS	ENST00000484741	ENST00000289416		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-intron	ENST00000484741	ENST00000440284		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-intron	ENST00000484741	ENST00000450120		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-3UTR	ENST00000484741	ENST00000567387		TCGA	RV	PRAD	TCGA-CH-5752-01A	NET1	chr10	5471192	+	ACSM3	chr16	20807692	+
intron-3CDS	ENST00000589123	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000589123	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-intron	ENST00000589123	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000346156	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000346156	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-intron	ENST00000346156	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000395111	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000395111	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-intron	ENST00000395111	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000586919	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000586919	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-intron	ENST00000586919	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
In-frame	ENST00000341919	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
In-frame	ENST00000341919	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000341919	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
In-frame	ENST00000590282	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
In-frame	ENST00000590282	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000590282	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
In-frame	ENST00000443272	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
In-frame	ENST00000443272	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
5CDS-intron	ENST00000443272	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000588839	ENST00000292672		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-3CDS	ENST00000588839	ENST00000541430		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
intron-intron	ENST00000588839	ENST00000588101		TCGA	RV	PRAD	TCGA-ZG-A8QY-01A	NFIC	chr19	3366664	+	CELF5	chr19	3273870	+
Frame-shit	ENST00000286091	ENST00000262903		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	PDIA4	chr7	148725413	-	HACE1	chr6	105232360	-
Frame-shit	ENST00000286091	ENST00000369125		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	PDIA4	chr7	148725413	-	HACE1	chr6	105232360	-
5CDS-intron	ENST00000286091	ENST00000517995		TCGA	RV	PRAD	TCGA-KK-A6E6-01A	PDIA4	chr7	148725413	-	HACE1	chr6	105232360	-
Frame-shit	ENST00000585331	ENST00000358065		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
In-frame	ENST00000585331	ENST00000430981		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000585331	ENST00000425863		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000585331	ENST00000462115		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000317615	ENST00000358065		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
In-frame	ENST00000317615	ENST00000430981		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000317615	ENST00000425863		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000317615	ENST00000462115		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000590217	ENST00000358065		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
In-frame	ENST00000590217	ENST00000430981		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
Frame-shit	ENST00000590217	ENST00000425863		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
5CDS-3UTR	ENST00000590217	ENST00000462115		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000589405	ENST00000358065		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000589405	ENST00000430981		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
intron-3CDS	ENST00000589405	ENST00000425863		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
intron-3UTR	ENST00000589405	ENST00000462115		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PSMG2	chr18	12706720	+	SETMAR	chr3	4354582	+
5UTR-3CDS	ENST00000431726	ENST00000392237		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
5UTR-3CDS	ENST00000431726	ENST00000358299		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
5UTR-intron	ENST00000431726	ENST00000425178		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
5UTR-intron	ENST00000431726	ENST00000418208		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
Frame-shit	ENST00000265562	ENST00000392237		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
Frame-shit	ENST00000265562	ENST00000358299		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
5CDS-intron	ENST00000265562	ENST00000425178		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
5CDS-intron	ENST00000265562	ENST00000418208		TCGA	RV	PRAD	TCGA-HC-7078-01A	PTPN23	chr3	47422670	+	ICA1L	chr2	203661687	-
intron-5UTR	ENST00000380394	ENST00000582888		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380394	ENST00000602676		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380394	ENST00000322297		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380394	ENST00000583542		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-intron	ENST00000380394	ENST00000588673		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000498815	ENST00000582888		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000498815	ENST00000602676		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000498815	ENST00000322297		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000498815	ENST00000583542		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-intron	ENST00000498815	ENST00000588673		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380384	ENST00000582888		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380384	ENST00000602676		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380384	ENST00000322297		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380384	ENST00000583542		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-intron	ENST00000380384	ENST00000588673		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
5CDS-5UTR	ENST00000315377	ENST00000582888		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
5CDS-5UTR	ENST00000315377	ENST00000602676		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
5CDS-5UTR	ENST00000315377	ENST00000322297		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
5CDS-5UTR	ENST00000315377	ENST00000583542		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
5CDS-intron	ENST00000315377	ENST00000588673		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380381	ENST00000582888		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380381	ENST00000602676		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380381	ENST00000322297		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-5UTR	ENST00000380381	ENST00000583542		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
intron-intron	ENST00000380381	ENST00000588673		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPS6	chr9	19376283	-	OAZ1	chr19	2269520	+
In-frame	ENST00000339570	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000339570	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000339570	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000339570	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
5CDS-3UTR	ENST00000339570	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000415380	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000415380	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000415380	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000415380	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
5CDS-3UTR	ENST00000415380	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000261693	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000261693	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000261693	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000261693	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
5CDS-3UTR	ENST00000261693	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000376788	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000376788	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000376788	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000376788	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
5CDS-3UTR	ENST00000376788	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000546215	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000546215	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000546215	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000546215	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
5CDS-3UTR	ENST00000546215	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000535005	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000535005	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000535005	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000535005	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3UTR	ENST00000535005	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000541205	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000541205	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000541205	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000541205	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3UTR	ENST00000541205	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000540495	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000540495	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000540495	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000540495	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3UTR	ENST00000540495	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000544327	ENST00000512913		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000544327	ENST00000265073		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000544327	ENST00000515355		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3CDS	ENST00000544327	ENST00000502897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
intron-3UTR	ENST00000544327	ENST00000504789		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	SCARB1	chr12	125348141	-	SUB1	chr5	32599067	+
In-frame	ENST00000229729	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
In-frame	ENST00000229729	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
5CDS-intron	ENST00000229729	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
In-frame	ENST00000544672	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
In-frame	ENST00000544672	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
5CDS-intron	ENST00000544672	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
In-frame	ENST00000375562	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
In-frame	ENST00000375562	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
5CDS-intron	ENST00000375562	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000465707	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000465707	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000465707	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000417894	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000417894	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000417894	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000550821	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000550821	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000550821	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000550401	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000550401	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000550401	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000492911	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000492911	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000492911	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000453831	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000453831	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000453831	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000546461	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000546461	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000546461	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000551168	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000551168	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000551168	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000495620	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000495620	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000495620	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000425238	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000425238	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000425238	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000548188	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000548188	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000548188	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000549663	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000549663	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000549663	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000469478	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000469478	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000469478	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000415517	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000415517	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000415517	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000547288	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000547288	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000547288	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000547493	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000547493	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000547493	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000463111	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000463111	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000463111	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000383379	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000383379	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000383379	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000547684	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000547684	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000547684	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000549677	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000549677	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000549677	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000497745	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000497745	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000497745	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000366281	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000366281	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000366281	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000442152	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000442152	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000442152	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000553147	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000553147	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000553147	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000553121	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000553121	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000553121	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000495181	ENST00000373719		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-3CDS	ENST00000495181	ENST00000373701		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-intron	ENST00000495181	ENST00000498566		TCGA	RV	PRAD	TCGA-KC-A7F5-01A	SLC44A4	chr6	31830969	-	OGT	chrX	70782980	+
intron-5UTR	ENST00000460934	ENST00000259119		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000460934	ENST00000426052		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
intron-3UTR	ENST00000460934	ENST00000490989		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000460934	ENST00000413427		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
intron-5UTR	ENST00000460934	ENST00000458537		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000367145	ENST00000259119		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000367145	ENST00000426052		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
5UTR-3UTR	ENST00000367145	ENST00000490989		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000367145	ENST00000413427		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
5UTR-5UTR	ENST00000367145	ENST00000458537		TCGA	RV	PRAD	TCGA-KK-A8IL-01A	SLC45A3	chr1	205649522	-	SKIL	chr3	170077487	+
5CDS-intron	ENST00000460934	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000460934	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000300134		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000538913		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000543873		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000556155		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000537215		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000367145	ENST00000454075		TCGA	RV	PRAD	TCGA-EJ-5497-01A	SLC45A3	chr1	205626979	-	STAT6	chr12	57496773	-
In-frame	ENST00000262613	ENST00000397269		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
In-frame	ENST00000262613	ENST00000362091		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
5CDS-intron	ENST00000262613	ENST00000470089		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
5CDS-intron	ENST00000262613	ENST00000379999		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
intron-3CDS	ENST00000413388	ENST00000397269		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
intron-3CDS	ENST00000413388	ENST00000362091		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
intron-intron	ENST00000413388	ENST00000470089		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
intron-intron	ENST00000413388	ENST00000379999		TCGA	RV	PRAD	TCGA-EJ-7318-01B	SLC9A3R1	chr17	72745426	+	FBXO18	chr10	5978419	+
Frame-shit	ENST00000393446	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393446	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393446	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393446	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000265437	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000265437	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000265437	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000265437	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000393451	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393451	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393451	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393451	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000393449	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000393449	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393449	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000393449	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000323984	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-3UTR	ENST00000323984	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000323984	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
5CDS-intron	ENST00000323984	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000432298	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000432298	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000432298	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000432298	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000422922	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000422922	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000422922	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000422922	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000487459	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000487459	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000487459	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000487459	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393443	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393443	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393443	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393443	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393447	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393447	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393447	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393447	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000393444	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000393444	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393444	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000393444	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3CDS	ENST00000465133	ENST00000361183		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-3UTR	ENST00000465133	ENST00000458284		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000465133	ENST00000490693		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
intron-intron	ENST00000465133	ENST00000466023		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	ST7	chr7	116593745	+	CAPZA2	chr7	116556114	+
Frame-shit	ENST00000335464	ENST00000555028		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
5CDS-3UTR	ENST00000335464	ENST00000554076		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
Frame-shit	ENST00000417024	ENST00000555028		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
5CDS-3UTR	ENST00000417024	ENST00000554076		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
Frame-shit	ENST00000582773	ENST00000555028		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
5CDS-3UTR	ENST00000582773	ENST00000554076		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
Frame-shit	ENST00000582330	ENST00000555028		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
5CDS-3UTR	ENST00000582330	ENST00000554076		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
intron-3CDS	ENST00000584171	ENST00000555028		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
intron-3UTR	ENST00000584171	ENST00000554076		TCGA	RV	PRAD	TCGA-EJ-7318-01B	TMEM104	chr17	72773514	+	LIN52	chr14	74557935	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5524-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7213-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7819-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000265107	ENST00000265109		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000265107	ENST00000512629		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000265107	ENST00000428746		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000265107	ENST00000503673		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000265107	ENST00000515799		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000265107	ENST00000506376		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
5CDS-3UTR	ENST00000265107	ENST00000507276		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
5CDS-3UTR	ENST00000265107	ENST00000397449		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000504564	ENST00000265109		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000504564	ENST00000512629		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000504564	ENST00000428746		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000504564	ENST00000503673		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000504564	ENST00000515799		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
In-frame	ENST00000504564	ENST00000506376		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
5CDS-3UTR	ENST00000504564	ENST00000507276		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
5CDS-3UTR	ENST00000504564	ENST00000397449		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3CDS	ENST00000510699	ENST00000265109		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3CDS	ENST00000510699	ENST00000512629		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3CDS	ENST00000510699	ENST00000428746		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3CDS	ENST00000510699	ENST00000503673		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3CDS	ENST00000510699	ENST00000515799		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3CDS	ENST00000510699	ENST00000506376		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3UTR	ENST00000510699	ENST00000507276		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
3UTR-3UTR	ENST00000510699	ENST00000397449		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	WDR70	chr5	37516692	+	RAI14	chr5	34796044	+
5CDS-intron	ENST00000598463	ENST00000445067		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000598463	ENST00000369744		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000598463	ENST00000369748		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000598463	ENST00000466741		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000598463	ENST00000524472		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000598463	ENST00000529459		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000345523	ENST00000445067		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000345523	ENST00000369744		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000345523	ENST00000369748		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000345523	ENST00000466741		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000345523	ENST00000524472		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000345523	ENST00000529459		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000391812	ENST00000445067		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000391812	ENST00000369744		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000391812	ENST00000369748		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000391812	ENST00000466741		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000391812	ENST00000524472		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
5CDS-intron	ENST00000391812	ENST00000529459		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000596655	ENST00000445067		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000596655	ENST00000369744		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000596655	ENST00000369748		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000596655	ENST00000466741		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000596655	ENST00000524472		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000596655	ENST00000529459		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000595794	ENST00000445067		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000595794	ENST00000369744		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000595794	ENST00000369748		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000595794	ENST00000466741		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000595794	ENST00000524472		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
intron-intron	ENST00000595794	ENST00000529459		TCGA	RV	PRAD	TCGA-HC-7818-01A	C19orf48	chr19	51300962	-	CHI3L2	chr1	111772314	+
In-frame	ENST00000305850	ENST00000438132		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000305850	ENST00000542263		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000305850	ENST00000417362		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000305850	ENST00000251143		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000305850	ENST00000543152		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000305850	ENST00000448695		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000305850	ENST00000544275		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000305850	ENST00000538853		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000299572	ENST00000438132		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000299572	ENST00000542263		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000299572	ENST00000417362		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000299572	ENST00000251143		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000299572	ENST00000543152		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000299572	ENST00000448695		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000299572	ENST00000544275		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000299572	ENST00000538853		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000439957	ENST00000438132		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000439957	ENST00000542263		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000439957	ENST00000417362		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000439957	ENST00000251143		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000439957	ENST00000543152		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000439957	ENST00000448695		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000439957	ENST00000544275		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000439957	ENST00000538853		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000393335	ENST00000438132		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000393335	ENST00000542263		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000393335	ENST00000417362		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000393335	ENST00000251143		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000393335	ENST00000543152		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000393335	ENST00000448695		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000393335	ENST00000544275		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000393335	ENST00000538853		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-3CDS	ENST00000569461	ENST00000438132		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-3CDS	ENST00000569461	ENST00000542263		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-3CDS	ENST00000569461	ENST00000417362		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-3CDS	ENST00000569461	ENST00000251143		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-3CDS	ENST00000569461	ENST00000543152		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-3CDS	ENST00000569461	ENST00000448695		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-intron	ENST00000569461	ENST00000544275		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
intron-intron	ENST00000569461	ENST00000538853		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000428963	ENST00000438132		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000428963	ENST00000542263		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000428963	ENST00000417362		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000428963	ENST00000251143		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000428963	ENST00000543152		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000428963	ENST00000448695		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000428963	ENST00000544275		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
5CDS-intron	ENST00000428963	ENST00000538853		TCGA	RV	PRAD	TCGA-EJ-5530-01A	CENPN	chr16	81053881	+	C16orf62	chr16	19644414	+
In-frame	ENST00000261038	ENST00000398344		TCGA	RV	PRAD	TCGA-EJ-A7NH-01A	DIRC2	chr3	122525797	+	DDT	chr22	24313812	-
Frame-shit	ENST00000261038	ENST00000350608		TCGA	RV	PRAD	TCGA-EJ-A7NH-01A	DIRC2	chr3	122525797	+	DDT	chr22	24313812	-
Frame-shit	ENST00000261038	ENST00000404092		TCGA	RV	PRAD	TCGA-EJ-A7NH-01A	DIRC2	chr3	122525797	+	DDT	chr22	24313812	-
5CDS-intron	ENST00000261038	ENST00000403754		TCGA	RV	PRAD	TCGA-EJ-A7NH-01A	DIRC2	chr3	122525797	+	DDT	chr22	24313812	-
5CDS-intron	ENST00000261038	ENST00000430101		TCGA	RV	PRAD	TCGA-EJ-A7NH-01A	DIRC2	chr3	122525797	+	DDT	chr22	24313812	-
intron-3CDS	ENST00000462484	ENST00000371561		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000462484	ENST00000315048		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000471122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000350902		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000371553		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000371546		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000371559		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000371555		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000371550		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000462484	ENST00000371560		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000334856	ENST00000371561		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000334856	ENST00000315048		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000471122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000350902		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000371553		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000371546		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000371559		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000371555		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000371550		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000334856	ENST00000371560		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
In-frame	ENST00000460843	ENST00000371561		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
In-frame	ENST00000460843	ENST00000315048		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000471122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000350902		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371553		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371546		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371559		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371555		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371550		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5CDS-3UTR	ENST00000460843	ENST00000371560		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000371394	ENST00000371561		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3CDS	ENST00000371394	ENST00000315048		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000471122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000350902		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000371553		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000371546		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000371559		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000371555		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000371550		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
intron-3UTR	ENST00000371394	ENST00000371560		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	EHMT1	chr9	140707982	+	GRIN1	chr9	140036465	+
5UTR-3CDS	ENST00000441788	ENST00000292672		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
5UTR-3CDS	ENST00000441788	ENST00000541430		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
5UTR-intron	ENST00000441788	ENST00000588101		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
intron-3CDS	ENST00000313639	ENST00000292672		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
intron-3CDS	ENST00000313639	ENST00000541430		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
intron-intron	ENST00000313639	ENST00000588101		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
intron-3CDS	ENST00000395095	ENST00000292672		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
intron-3CDS	ENST00000395095	ENST00000541430		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
intron-intron	ENST00000395095	ENST00000588101		TCGA	RV	PRAD	TCGA-XJ-A9DX-01A	FZR1	chr19	3506472	+	CELF5	chr19	3293317	+
5UTR-3CDS	ENST00000409843	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409843	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000409843	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409830	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409830	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000409830	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000410051	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000410051	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000410051	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
3UTR-3CDS	ENST00000479019	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
3UTR-3CDS	ENST00000479019	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
3UTR-intron	ENST00000479019	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409805	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409805	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000409805	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000359135	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000359135	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000359135	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409580	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409580	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000409580	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409637	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409637	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000409637	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409609	ENST00000361354		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-3CDS	ENST00000409609	ENST00000360982		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
5UTR-intron	ENST00000409609	ENST00000478449		TCGA	RV	PRAD	TCGA-J4-A83J-01A	GULP1	chr2	189248616	+	NCKAP1	chr2	183853914	-
In-frame	ENST00000372009	ENST00000262915		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000372009	ENST00000372375		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000372009	ENST00000351035		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000372009	ENST00000372374		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000372009	ENST00000353126		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000545417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000330208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000335430		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372377		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000361392		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000361400		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000347631		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000361812		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372362		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000531451		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372366		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372365		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372368		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000332628		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372372		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000531816		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000528371		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372369		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000531993		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000361746		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000533933		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000372009	ENST00000372367		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-3UTR	ENST00000372009	ENST00000461375		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000361297	ENST00000262915		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000361297	ENST00000372375		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000361297	ENST00000351035		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000361297	ENST00000372374		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
In-frame	ENST00000361297	ENST00000353126		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000545417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000330208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000335430		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372377		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000361392		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000361400		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000347631		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000361812		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372362		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000531451		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372366		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372365		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372368		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000332628		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372372		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000531816		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000528371		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372369		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000531993		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000361746		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000533933		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-intron	ENST00000361297	ENST00000372367		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
5CDS-3UTR	ENST00000361297	ENST00000461375		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-3CDS	ENST00000477968	ENST00000262915		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-3CDS	ENST00000477968	ENST00000372375		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-3CDS	ENST00000477968	ENST00000351035		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-3CDS	ENST00000477968	ENST00000372374		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-3CDS	ENST00000477968	ENST00000353126		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000545417		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000330208		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000335430		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372377		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000361392		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000361400		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000347631		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000361812		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372362		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000531451		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372366		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372365		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372368		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000332628		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372372		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000531816		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000528371		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372369		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000531993		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000361746		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000533933		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-intron	ENST00000477968	ENST00000372367		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
intron-3UTR	ENST00000477968	ENST00000461375		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	MAST2	chr1	46348067	+	ST3GAL3	chr1	44365213	+
Frame-shit	ENST00000371996	ENST00000371939		TCGA	RV	PRAD	TCGA-HC-7744-01A	MINPP1	chr10	89280926	+	LIPJ	chr10	90365390	+
intron-3CDS	ENST00000371994	ENST00000371939		TCGA	RV	PRAD	TCGA-HC-7744-01A	MINPP1	chr10	89280926	+	LIPJ	chr10	90365390	+
Frame-shit	ENST00000536010	ENST00000371939		TCGA	RV	PRAD	TCGA-HC-7744-01A	MINPP1	chr10	89280926	+	LIPJ	chr10	90365390	+
3UTR-3CDS	ENST00000472891	ENST00000371939		TCGA	RV	PRAD	TCGA-HC-7744-01A	MINPP1	chr10	89280926	+	LIPJ	chr10	90365390	+
In-frame	ENST00000249636	ENST00000326648		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
5CDS-intron	ENST00000249636	ENST00000416172		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
5CDS-intron	ENST00000249636	ENST00000559364		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
intron-3CDS	ENST00000545237	ENST00000326648		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
intron-intron	ENST00000545237	ENST00000416172		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
intron-intron	ENST00000545237	ENST00000559364		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
intron-3CDS	ENST00000567417	ENST00000326648		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
intron-intron	ENST00000567417	ENST00000416172		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
intron-intron	ENST00000567417	ENST00000559364		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	PIAS1	chr15	68346688	+	ZNF609	chr15	64970315	+
In-frame	ENST00000249269	ENST00000265717		TCGA	RV	PRAD	TCGA-FC-7708-01A	PMPCB	chr7	102952578	+	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000249269	ENST00000393613		TCGA	RV	PRAD	TCGA-FC-7708-01A	PMPCB	chr7	102952578	+	PRKAR2B	chr7	106762397	+
Frame-shit	ENST00000428154	ENST00000265717		TCGA	RV	PRAD	TCGA-FC-7708-01A	PMPCB	chr7	102952578	+	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000428154	ENST00000393613		TCGA	RV	PRAD	TCGA-FC-7708-01A	PMPCB	chr7	102952578	+	PRKAR2B	chr7	106762397	+
In-frame	ENST00000420236	ENST00000265717		TCGA	RV	PRAD	TCGA-FC-7708-01A	PMPCB	chr7	102952578	+	PRKAR2B	chr7	106762397	+
5CDS-3UTR	ENST00000420236	ENST00000393613		TCGA	RV	PRAD	TCGA-FC-7708-01A	PMPCB	chr7	102952578	+	PRKAR2B	chr7	106762397	+
5CDS-5UTR	ENST00000319104	ENST00000215939		TCGA	RV	PRAD	TCGA-M7-A725-01A	RNF170	chr8	42729074	-	CRYBB1	chr22	27012302	-
5UTR-5UTR	ENST00000319073	ENST00000215939		TCGA	RV	PRAD	TCGA-M7-A725-01A	RNF170	chr8	42729074	-	CRYBB1	chr22	27012302	-
5CDS-5UTR	ENST00000534961	ENST00000215939		TCGA	RV	PRAD	TCGA-M7-A725-01A	RNF170	chr8	42729074	-	CRYBB1	chr22	27012302	-
5CDS-5UTR	ENST00000527424	ENST00000215939		TCGA	RV	PRAD	TCGA-M7-A725-01A	RNF170	chr8	42729074	-	CRYBB1	chr22	27012302	-
5UTR-5UTR	ENST00000526349	ENST00000215939		TCGA	RV	PRAD	TCGA-M7-A725-01A	RNF170	chr8	42729074	-	CRYBB1	chr22	27012302	-
In-frame	ENST00000455789	ENST00000406785		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000542756		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000455789	ENST00000403092		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000405901		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000402441		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000455789	ENST00000405269		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000542024		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000332839		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000406391		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000455789	ENST00000408028		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000406785		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000542756		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000310015	ENST00000403092		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000405901		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000402441		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000405269		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000542024		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000332839		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000406391		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000310015	ENST00000408028		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000406785		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000542756		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000418194	ENST00000403092		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000405901		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000402441		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000405269		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000542024		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000332839		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000406391		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
Frame-shit	ENST00000418194	ENST00000408028		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000406785		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000542756		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000403092		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000405901		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000402441		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000405269		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000542024		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000332839		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000406391		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
intron-3CDS	ENST00000483084	ENST00000408028		TCGA	RV	PRAD	TCGA-ZG-A9MC-01A	SP3	chr2	174819601	-	SLC8A1	chr2	40342769	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6384-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000298552	ENST00000351304		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000298552	ENST00000372080		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000545250	ENST00000351304		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000545250	ENST00000372080		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000440111	ENST00000351304		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000440111	ENST00000372080		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000403810	ENST00000351304		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
5CDS-intron	ENST00000403810	ENST00000372080		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
intron-intron	ENST00000475903	ENST00000351304		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
intron-intron	ENST00000475903	ENST00000372080		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TSC1	chr9	135796750	-	CEL	chr9	135945848	+
intron-3CDS	ENST00000489714	ENST00000303735		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000489714	ENST00000409149		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000489714	ENST00000409058		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000489714	ENST00000409662		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-intron	ENST00000489714	ENST00000493887		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000536175	ENST00000303735		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000536175	ENST00000409149		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000536175	ENST00000409058		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000536175	ENST00000409662		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-intron	ENST00000536175	ENST00000493887		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000243344	ENST00000303735		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000243344	ENST00000409149		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000243344	ENST00000409058		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
Frame-shit	ENST00000243344	ENST00000409662		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
5CDS-intron	ENST00000243344	ENST00000493887		TCGA	RV	PRAD	TCGA-HC-7744-01A	TTC21B	chr2	166810195	-	SLC38A11	chr2	165802237	-
intron-3CDS	ENST00000344423	ENST00000359511		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3CDS	ENST00000344423	ENST00000423538		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3UTR	ENST00000344423	ENST00000469537		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3CDS	ENST00000523202	ENST00000359511		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3CDS	ENST00000523202	ENST00000423538		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3UTR	ENST00000523202	ENST00000469537		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
5UTR-3CDS	ENST00000523095	ENST00000359511		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
5UTR-3CDS	ENST00000523095	ENST00000423538		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
5UTR-3UTR	ENST00000523095	ENST00000469537		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3CDS	ENST00000519730	ENST00000359511		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3CDS	ENST00000519730	ENST00000423538		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
intron-3UTR	ENST00000519730	ENST00000469537		TCGA	RV	PRAD	TCGA-HC-7744-01A	ZNF395	chr8	28243521	-	SLC25A44	chr1	156177677	+
In-frame	ENST00000336199	ENST00000366535		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000336199	ENST00000462358		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
Frame-shit	ENST00000366540	ENST00000366535		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000366540	ENST00000462358		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
In-frame	ENST00000366539	ENST00000366535		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000366539	ENST00000462358		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
In-frame	ENST00000263826	ENST00000366535		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
5CDS-intron	ENST00000263826	ENST00000462358		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
intron-3CDS	ENST00000492957	ENST00000366535		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
intron-intron	ENST00000492957	ENST00000462358		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	AKT3	chr1	244006427	-	ADSS	chr1	244601070	-
Frame-shit	ENST00000371269	ENST00000239367		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
5CDS-5UTR	ENST00000371269	ENST00000546019		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
5CDS-intron	ENST00000371269	ENST00000463728		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
5CDS-intron	ENST00000371269	ENST00000367368		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-3CDS	ENST00000537443	ENST00000239367		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-5UTR	ENST00000537443	ENST00000546019		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-intron	ENST00000537443	ENST00000463728		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-intron	ENST00000537443	ENST00000367368		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-3CDS	ENST00000535035	ENST00000239367		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-5UTR	ENST00000535035	ENST00000546019		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-intron	ENST00000535035	ENST00000463728		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
intron-intron	ENST00000535035	ENST00000367368		TCGA	RV	PRAD	TCGA-KC-A7FA-01A	DHCR24	chr1	55315306	-	LRP11	chr6	150174296	-
In-frame	ENST00000265000	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7123-01A	GALNT7	chr4	174169591	+	SPCS3	chr4	177243321	+
5CDS-intron	ENST00000265000	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7123-01A	GALNT7	chr4	174169591	+	SPCS3	chr4	177243321	+
In-frame	ENST00000512285	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7123-01A	GALNT7	chr4	174169591	+	SPCS3	chr4	177243321	+
5CDS-intron	ENST00000512285	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7123-01A	GALNT7	chr4	174169591	+	SPCS3	chr4	177243321	+
intron-3CDS	ENST00000502407	ENST00000503362		TCGA	RV	PRAD	TCGA-EJ-7123-01A	GALNT7	chr4	174169591	+	SPCS3	chr4	177243321	+
intron-intron	ENST00000502407	ENST00000507001		TCGA	RV	PRAD	TCGA-EJ-7123-01A	GALNT7	chr4	174169591	+	SPCS3	chr4	177243321	+
5UTR-3CDS	ENST00000368655	ENST00000271915		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-3CDS	ENST00000368655	ENST00000361147		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-3CDS	ENST00000368655	ENST00000358505		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5UTR-intron	ENST00000368655	ENST00000515643		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	GATAD2B	chr1	153895209	-	KCNN3	chr1	154744869	-
5CDS-5UTR	ENST00000251808	ENST00000311028		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-5UTR	ENST00000251808	ENST00000395923		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000251808	ENST00000220931		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-5UTR	ENST00000251808	ENST00000521599		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000251808	ENST00000522951		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000251808	ENST00000519508		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000251808	ENST00000521371		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-5UTR	ENST00000395927	ENST00000311028		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-5UTR	ENST00000395927	ENST00000395923		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000395927	ENST00000220931		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-5UTR	ENST00000395927	ENST00000521599		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000395927	ENST00000522951		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000395927	ENST00000519508		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-intron	ENST00000395927	ENST00000521371		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-5UTR	ENST00000517674	ENST00000311028		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-5UTR	ENST00000517674	ENST00000395923		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-intron	ENST00000517674	ENST00000220931		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-5UTR	ENST00000517674	ENST00000521599		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-intron	ENST00000517674	ENST00000522951		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-intron	ENST00000517674	ENST00000519508		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
intron-intron	ENST00000517674	ENST00000521371		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	GRHL2	chr8	102631925	+	NCALD	chr8	102928086	-
5CDS-5UTR	ENST00000381298	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381298	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381298	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381298	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381298	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000381298	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000336909	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000336909	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000336909	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000336909	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000336909	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000336909	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381287	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381287	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381287	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381287	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381287	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000381287	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000502326	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000502326	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000502326	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000502326	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000502326	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000502326	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381294	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381294	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381294	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381294	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381294	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000381294	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000536319	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000536319	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000536319	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000536319	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000536319	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000536319	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381293	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381293	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381293	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381293	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381293	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000381293	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381286	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381286	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000381286	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381286	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000381286	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000381286	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000522633	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000522633	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000522633	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000522633	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000522633	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000522633	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000396816	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000396816	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-5UTR	ENST00000396816	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000396816	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-3UTR	ENST00000396816	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000396816	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5UTR-5UTR	ENST00000577363	ENST00000514278		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5UTR-5UTR	ENST00000577363	ENST00000353507		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5UTR-5UTR	ENST00000577363	ENST00000505374		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5UTR-3UTR	ENST00000577363	ENST00000508580		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5UTR-3UTR	ENST00000577363	ENST00000354991		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5UTR-intron	ENST00000577363	ENST00000511853		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	IL6ST	chr5	55272043	-	DDX4	chr5	55034778	+
5CDS-intron	ENST00000322428	ENST00000586218		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000593256		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000447337		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000354882		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000586590		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000586956		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000589555		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000587948		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000322428	ENST00000588560		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-intron	ENST00000534585	ENST00000586218		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000593256		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000447337		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000354882		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000586590		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000586956		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000589555		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000587948		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000534585	ENST00000588560		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-intron	ENST00000532522	ENST00000586218		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000593256		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000447337		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000354882		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000586590		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000586956		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000589555		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000587948		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000532522	ENST00000588560		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	MAF1	chr8	145161367	+	TMEM205	chr19	11456304	-
In-frame	ENST00000375571	ENST00000003302		TCGA	RV	PRAD	TCGA-EJ-7785-01A	MAPRE1	chr20	31427662	+	USP28	chr11	113705057	-
In-frame	ENST00000375571	ENST00000260188		TCGA	RV	PRAD	TCGA-EJ-7785-01A	MAPRE1	chr20	31427662	+	USP28	chr11	113705057	-
5CDS-intron	ENST00000375571	ENST00000544967		TCGA	RV	PRAD	TCGA-EJ-7785-01A	MAPRE1	chr20	31427662	+	USP28	chr11	113705057	-
5CDS-intron	ENST00000375571	ENST00000545540		TCGA	RV	PRAD	TCGA-EJ-7785-01A	MAPRE1	chr20	31427662	+	USP28	chr11	113705057	-
5CDS-intron	ENST00000375571	ENST00000537706		TCGA	RV	PRAD	TCGA-EJ-7785-01A	MAPRE1	chr20	31427662	+	USP28	chr11	113705057	-
5CDS-5UTR	ENST00000375571	ENST00000542033		TCGA	RV	PRAD	TCGA-EJ-7785-01A	MAPRE1	chr20	31427662	+	USP28	chr11	113705057	-
intron-intron	ENST00000396324	ENST00000264818		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000396324	ENST00000524462		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000396324	ENST00000525621		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000396324	ENST00000529370		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000396324	ENST00000529422		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000452625	ENST00000264818		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000452625	ENST00000524462		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000452625	ENST00000525621		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000452625	ENST00000529370		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000452625	ENST00000529422		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000576790	ENST00000264818		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000576790	ENST00000524462		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000576790	ENST00000525621		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000576790	ENST00000529370		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000576790	ENST00000529422		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000300036	ENST00000264818		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000300036	ENST00000524462		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000300036	ENST00000525621		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000300036	ENST00000529370		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000300036	ENST00000529422		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000573908	ENST00000264818		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000573908	ENST00000524462		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000573908	ENST00000525621		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000573908	ENST00000529370		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
intron-intron	ENST00000573908	ENST00000529422		TCGA	RV	PRAD	TCGA-VP-A879-01A	MYH11	chr16	15796992	-	TYK2	chr19	10491352	-
5CDS-3UTR	ENST00000355237	ENST00000380050		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000355237	ENST00000265741		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000355237	ENST00000406263		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000355237	ENST00000436577		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000355237	ENST00000496279		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000380050		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000265741		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000406263		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000436577		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000396442	ENST00000496279		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000380766	ENST00000380050		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000380766	ENST00000265741		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000380766	ENST00000406263		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000380766	ENST00000436577		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-intron	ENST00000380766	ENST00000496279		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000538151	ENST00000380050		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000538151	ENST00000265741		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000538151	ENST00000406263		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000538151	ENST00000436577		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000538151	ENST00000496279		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000380050		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000265741		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000406263		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000436577		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-intron	ENST00000542132	ENST00000496279		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000380050		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000265741		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000406263		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000436577		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
intron-intron	ENST00000514370	ENST00000496279		TCGA	RV	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68809936	+	CDK14	chr7	90836480	+
Frame-shit	ENST00000254480	ENST00000434006		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMARCC1	chr3	47777524	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000425518	ENST00000434006		TCGA	RV	PRAD	TCGA-HC-8265-01B	SMARCC1	chr3	47777524	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000169298	ENST00000602866		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
5UTR-3CDS	ENST00000169298	ENST00000298852		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
5UTR-3CDS	ENST00000169298	ENST00000530912		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
5UTR-3CDS	ENST00000457772	ENST00000602866		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
5UTR-3CDS	ENST00000457772	ENST00000298852		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
5UTR-3CDS	ENST00000457772	ENST00000530912		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
intron-3CDS	ENST00000448044	ENST00000602866		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
intron-3CDS	ENST00000448044	ENST00000298852		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
intron-3CDS	ENST00000448044	ENST00000530912		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
intron-3CDS	ENST00000487031	ENST00000602866		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
intron-3CDS	ENST00000487031	ENST00000298852		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
intron-3CDS	ENST00000487031	ENST00000530912		TCGA	RV	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447501	-
5CDS-intron	ENST00000369902	ENST00000330883		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369902	ENST00000392968		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369902	ENST00000262186		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369902	ENST00000430723		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369899	ENST00000330883		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369899	ENST00000392968		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369899	ENST00000262186		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000369899	ENST00000430723		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000423559	ENST00000330883		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000423559	ENST00000392968		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000423559	ENST00000262186		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5CDS-intron	ENST00000423559	ENST00000430723		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
intron-intron	ENST00000471000	ENST00000330883		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
intron-intron	ENST00000471000	ENST00000392968		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
intron-intron	ENST00000471000	ENST00000262186		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
intron-intron	ENST00000471000	ENST00000430723		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	SUFU	chr10	104309863	+	KCNH2	chr7	150672029	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5739-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5791-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A65F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67S-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A875-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SL-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000396029	ENST00000366510		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ADNP	chr20	49518554	-	SCCPDH	chr1	246899277	+
Frame-shit	ENST00000396032	ENST00000366510		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ADNP	chr20	49518554	-	SCCPDH	chr1	246899277	+
In-frame	ENST00000371602	ENST00000366510		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ADNP	chr20	49518554	-	SCCPDH	chr1	246899277	+
Frame-shit	ENST00000349014	ENST00000366510		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	ADNP	chr20	49518554	-	SCCPDH	chr1	246899277	+
5CDS-5UTR	ENST00000260526	ENST00000263441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000260526	ENST00000395325		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000260526	ENST00000371069		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-intron	ENST00000260526	ENST00000498720		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000482481	ENST00000263441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000482481	ENST00000395325		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
intron-5UTR	ENST00000482481	ENST00000371069		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
intron-intron	ENST00000482481	ENST00000498720		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000370217	ENST00000263441		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000370217	ENST00000395325		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-5UTR	ENST00000370217	ENST00000371069		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
5CDS-intron	ENST00000370217	ENST00000498720		TCGA	RV	PRAD	TCGA-EJ-5519-01A	ARHGAP29	chr1	94696963	-	DNAJC6	chr1	65830318	+
In-frame	ENST00000542334	ENST00000303052		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000542334	ENST00000607537		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
5CDS-intron	ENST00000542334	ENST00000303032		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000268057	ENST00000303052		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000268057	ENST00000607537		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
5CDS-intron	ENST00000268057	ENST00000303032		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000539603	ENST00000303052		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000539603	ENST00000607537		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
5CDS-intron	ENST00000539603	ENST00000303032		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000395205	ENST00000303052		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
In-frame	ENST00000395205	ENST00000607537		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
5CDS-intron	ENST00000395205	ENST00000303032		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
intron-3CDS	ENST00000564239	ENST00000303052		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
intron-3CDS	ENST00000564239	ENST00000607537		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
intron-intron	ENST00000564239	ENST00000303032		TCGA	RV	PRAD	TCGA-M7-A725-01A	BBS4	chr15	73028307	+	CSNK1G1	chr15	64472653	-
intron-3CDS	ENST00000263377	ENST00000397410		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-3CDS	ENST00000263377	ENST00000595465		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-intron	ENST00000263377	ENST00000595879		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-3CDS	ENST00000371835	ENST00000397410		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-3CDS	ENST00000371835	ENST00000595465		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-intron	ENST00000371835	ENST00000595879		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
5UTR-3CDS	ENST00000360016	ENST00000397410		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
5UTR-3CDS	ENST00000360016	ENST00000595465		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
5UTR-intron	ENST00000360016	ENST00000595879		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-3CDS	ENST00000602230	ENST00000397410		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-3CDS	ENST00000602230	ENST00000595465		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
intron-intron	ENST00000602230	ENST00000595879		TCGA	RV	PRAD	TCGA-EJ-8469-01A	BRD4	chr19	15443101	-	AKAP8L	chr19	15514853	-
Frame-shit	ENST00000398965	ENST00000281154		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	C4orf29	chr4	128910976	+	SLC25A31	chr4	128694541	+
Frame-shit	ENST00000444616	ENST00000281154		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	C4orf29	chr4	128910976	+	SLC25A31	chr4	128694541	+
intron-3CDS	ENST00000388795	ENST00000281154		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	C4orf29	chr4	128910976	+	SLC25A31	chr4	128694541	+
intron-3CDS	ENST00000273009	ENST00000475805		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000273009	ENST00000341179		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000273009	ENST00000372923		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000273009	ENST00000393594		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000273009	ENST00000486160		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-intron	ENST00000273009	ENST00000493925		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000360410	ENST00000475805		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000360410	ENST00000341179		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000360410	ENST00000372923		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000360410	ENST00000393594		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000360410	ENST00000486160		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-intron	ENST00000360410	ENST00000493925		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000325385	ENST00000475805		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000325385	ENST00000341179		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000325385	ENST00000372923		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000325385	ENST00000393594		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000325385	ENST00000486160		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
5CDS-intron	ENST00000325385	ENST00000493925		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000409401	ENST00000475805		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000409401	ENST00000341179		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000409401	ENST00000372923		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000409401	ENST00000393594		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000409401	ENST00000486160		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-intron	ENST00000409401	ENST00000493925		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000409307	ENST00000475805		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000409307	ENST00000341179		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000409307	ENST00000372923		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000409307	ENST00000393594		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
In-frame	ENST00000409307	ENST00000486160		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
5CDS-intron	ENST00000409307	ENST00000493925		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000470087	ENST00000475805		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000470087	ENST00000341179		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000470087	ENST00000372923		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000470087	ENST00000393594		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-3CDS	ENST00000470087	ENST00000486160		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
intron-intron	ENST00000470087	ENST00000493925		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	DIS3L2	chr2	233128150	+	DNM1	chr9	130996300	+
5CDS-intron	ENST00000369155	ENST00000322776		TCGA	RV	PRAD	TCGA-G9-6371-01A	HIST2H2BE	chr1	149856010	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000369155	ENST00000532303		TCGA	RV	PRAD	TCGA-G9-6371-01A	HIST2H2BE	chr1	149856010	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000369155	ENST00000529927		TCGA	RV	PRAD	TCGA-G9-6371-01A	HIST2H2BE	chr1	149856010	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000369155	ENST00000415352		TCGA	RV	PRAD	TCGA-G9-6371-01A	HIST2H2BE	chr1	149856010	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000369155	ENST00000526169		TCGA	RV	PRAD	TCGA-G9-6371-01A	HIST2H2BE	chr1	149856010	-	NDUFV1	chr11	67375697	+
Frame-shit	ENST00000528838	ENST00000215957		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	HSF1	chr8	145515556	+	MICALL1	chr22	38307959	+
5CDS-intron	ENST00000528838	ENST00000402631		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	HSF1	chr8	145515556	+	MICALL1	chr22	38307959	+
intron-3CDS	ENST00000400780	ENST00000215957		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	HSF1	chr8	145515556	+	MICALL1	chr22	38307959	+
intron-intron	ENST00000400780	ENST00000402631		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	HSF1	chr8	145515556	+	MICALL1	chr22	38307959	+
intron-3CDS	ENST00000528842	ENST00000215957		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	HSF1	chr8	145515556	+	MICALL1	chr22	38307959	+
intron-intron	ENST00000528842	ENST00000402631		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	HSF1	chr8	145515556	+	MICALL1	chr22	38307959	+
In-frame	ENST00000353442	ENST00000389413		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000353442	ENST00000409483		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000353442	ENST00000389416		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000353442	ENST00000389418		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000353442	ENST00000404321		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
Frame-shit	ENST00000359422	ENST00000389413		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
Frame-shit	ENST00000359422	ENST00000409483		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
Frame-shit	ENST00000359422	ENST00000389416		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
Frame-shit	ENST00000359422	ENST00000389418		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
Frame-shit	ENST00000359422	ENST00000404321		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000354505	ENST00000389413		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000354505	ENST00000409483		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000354505	ENST00000389416		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000354505	ENST00000389418		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000354505	ENST00000404321		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000540390	ENST00000389413		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000540390	ENST00000409483		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000540390	ENST00000389416		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000540390	ENST00000389418		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000540390	ENST00000404321		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
intron-3CDS	ENST00000430825	ENST00000389413		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
intron-3CDS	ENST00000430825	ENST00000409483		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
intron-3CDS	ENST00000430825	ENST00000389416		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
intron-3CDS	ENST00000430825	ENST00000389418		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
intron-3CDS	ENST00000430825	ENST00000404321		TCGA	RV	PRAD	TCGA-EJ-A8FU-01A	LMBR1	chr7	156549087	-	PTPRN2	chr7	157396767	-
In-frame	ENST00000230859	ENST00000251849		TCGA	RV	PRAD	TCGA-HC-8256-01A	PAPD7	chr5	6751310	+	RAF1	chr3	12641307	-
In-frame	ENST00000230859	ENST00000442415		TCGA	RV	PRAD	TCGA-HC-8256-01A	PAPD7	chr5	6751310	+	RAF1	chr3	12641307	-
In-frame	ENST00000230859	ENST00000534997		TCGA	RV	PRAD	TCGA-HC-8256-01A	PAPD7	chr5	6751310	+	RAF1	chr3	12641307	-
In-frame	ENST00000230859	ENST00000542177		TCGA	RV	PRAD	TCGA-HC-8256-01A	PAPD7	chr5	6751310	+	RAF1	chr3	12641307	-
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000340635	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000340635	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000360047	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000360047	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000507116	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000507116	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
Frame-shit	ENST00000502484	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
Frame-shit	ENST00000502484	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-5UTR	ENST00000502484	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-intron	ENST00000502484	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
In-frame	ENST00000546160	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
In-frame	ENST00000546160	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-5UTR	ENST00000546160	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
5CDS-intron	ENST00000546160	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000502575	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000502575	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000358923	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000358923	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503258	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000503258	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000405755	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000405755	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000317118	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000317118	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000503947	ENST00000453022		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-5UTR	ENST00000503947	ENST00000545085		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	PRAD	TCGA-CH-5750-01A	PDE4D	chr5	59481384	-	DEPDC1B	chr5	59983054	-
intron-3CDS	ENST00000340635	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000340635	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000340635	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000340635	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000360047	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000360047	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000360047	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000360047	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000507116	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000507116	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000507116	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000507116	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
5UTR-3CDS	ENST00000502484	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
5UTR-intron	ENST00000502484	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
5UTR-intron	ENST00000502484	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
5UTR-intron	ENST00000502484	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000546160	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000546160	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000546160	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000546160	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000502575	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000502575	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000502575	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000502575	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000358923	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000358923	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000358923	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000358923	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000503258	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000503258	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000503258	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000503258	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000405755	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000405755	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000405755	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000405755	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000317118	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000317118	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000317118	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000317118	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-3CDS	ENST00000503947	ENST00000265036		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000503947	ENST00000453022		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000503947	ENST00000545085		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
intron-intron	ENST00000503947	ENST00000509006		TCGA	RV	PRAD	TCGA-VN-A88O-01A	PDE4D	chr5	59783769	-	DEPDC1B	chr5	59895087	-
5CDS-5UTR	ENST00000448150	ENST00000367689		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000448150	ENST00000357444		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000448150	ENST00000251507		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000325589		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000367686		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000367687		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000347255		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000489615		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000478442		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000486220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000392064		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000448150	ENST00000367688		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000367649	ENST00000367689		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000367649	ENST00000357444		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000367649	ENST00000251507		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000325589		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000367686		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000367687		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000347255		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000489615		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000478442		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000486220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000392064		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000367649	ENST00000367688		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-5UTR	ENST00000465723	ENST00000367689		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-5UTR	ENST00000465723	ENST00000357444		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-5UTR	ENST00000465723	ENST00000251507		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000325589		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000367686		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000367687		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000347255		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000489615		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000478442		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000486220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000392064		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
intron-intron	ENST00000465723	ENST00000367688		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000462775	ENST00000367689		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000462775	ENST00000357444		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-5UTR	ENST00000462775	ENST00000251507		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000325589		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000367686		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000367687		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000347255		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000489615		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000478442		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000486220		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000392064		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
5CDS-intron	ENST00000462775	ENST00000367688		TCGA	RV	PRAD	TCGA-EJ-5518-01A	RASAL2	chr1	178359341	+	RABGAP1L	chr1	174200283	+
Frame-shit	ENST00000337907	ENST00000370363		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000337907	ENST00000370359		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000377464	ENST00000370363		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000377464	ENST00000370359		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000400907	ENST00000370363		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
Frame-shit	ENST00000400907	ENST00000370359		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
In-frame	ENST00000400908	ENST00000370363		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
In-frame	ENST00000400908	ENST00000370359		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000476556	ENST00000370363		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000476556	ENST00000370359		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000460659	ENST00000370363		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
5UTR-3CDS	ENST00000460659	ENST00000370359		TCGA	RV	PRAD	TCGA-G9-7522-01A	RERE	chr1	8482787	-	OOEP	chr6	74079108	-
5CDS-intron	ENST00000542575	ENST00000300134		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000542575	ENST00000538913		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000542575	ENST00000543873		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000542575	ENST00000556155		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000542575	ENST00000537215		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000542575	ENST00000454075		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000434726	ENST00000300134		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000434726	ENST00000538913		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000434726	ENST00000543873		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000434726	ENST00000556155		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000434726	ENST00000537215		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000434726	ENST00000454075		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000594991	ENST00000300134		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000594991	ENST00000538913		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000594991	ENST00000543873		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000594991	ENST00000556155		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000594991	ENST00000537215		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000594991	ENST00000454075		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
intron-intron	ENST00000412532	ENST00000300134		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
intron-intron	ENST00000412532	ENST00000538913		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
intron-intron	ENST00000412532	ENST00000543873		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
intron-intron	ENST00000412532	ENST00000556155		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
intron-intron	ENST00000412532	ENST00000537215		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
intron-intron	ENST00000412532	ENST00000454075		TCGA	RV	PRAD	TCGA-CH-5743-01A	SLC1A5	chr19	47278142	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VL-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7509-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-3CDS	ENST00000266712	ENST00000552864		TCGA	RV	PRAD	TCGA-CH-5792-01A	TMTC3	chr12	88536264	+	LIN7A	chr12	81205462	-
intron-3CDS	ENST00000371146	ENST00000371088		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	USP1	chr1	62903071	+	EFCAB7	chr1	64027380	+
intron-3UTR	ENST00000371146	ENST00000461039		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	USP1	chr1	62903071	+	EFCAB7	chr1	64027380	+
5UTR-3CDS	ENST00000339950	ENST00000371088		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	USP1	chr1	62903071	+	EFCAB7	chr1	64027380	+
5UTR-3UTR	ENST00000339950	ENST00000461039		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	USP1	chr1	62903071	+	EFCAB7	chr1	64027380	+
Frame-shit	ENST00000265293	ENST00000319653		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
5CDS-intron	ENST00000265293	ENST00000545751		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
5CDS-intron	ENST00000265293	ENST00000543681		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
5CDS-intron	ENST00000265293	ENST00000496950		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
Frame-shit	ENST00000521089	ENST00000319653		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
5CDS-intron	ENST00000521089	ENST00000545751		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
5CDS-intron	ENST00000521089	ENST00000543681		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
5CDS-intron	ENST00000521089	ENST00000496950		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
intron-3CDS	ENST00000522140	ENST00000319653		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
intron-intron	ENST00000522140	ENST00000545751		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
intron-intron	ENST00000522140	ENST00000543681		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
intron-intron	ENST00000522140	ENST00000496950		TCGA	RV	PRAD	TCGA-2A-A8VX-01A	WWC1	chr5	167798538	+	FMN2	chr1	240341221	+
Frame-shit	ENST00000274000	ENST00000264363		TCGA	RV	PRAD	TCGA-HC-7738-01A	AP1AR	chr4	113153330	+	NDST4	chr4	115792106	-
Frame-shit	ENST00000309703	ENST00000264363		TCGA	RV	PRAD	TCGA-HC-7738-01A	AP1AR	chr4	113153330	+	NDST4	chr4	115792106	-
Frame-shit	ENST00000367942	ENST00000211998		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
Frame-shit	ENST00000367942	ENST00000372755		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
5CDS-intron	ENST00000367942	ENST00000478896		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
5CDS-intron	ENST00000367942	ENST00000417648		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
intron-3CDS	ENST00000476437	ENST00000211998		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
intron-3CDS	ENST00000476437	ENST00000372755		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
intron-intron	ENST00000476437	ENST00000478896		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
intron-intron	ENST00000476437	ENST00000417648		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161736232	+	VCL	chr10	75854029	+
In-frame	ENST00000504592	ENST00000358105		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000504592	ENST00000508675		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
5CDS-intron	ENST00000504592	ENST00000512931		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000322953	ENST00000358105		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000322953	ENST00000508675		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
5CDS-intron	ENST00000322953	ENST00000512931		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000428908	ENST00000358105		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000428908	ENST00000508675		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
5CDS-intron	ENST00000428908	ENST00000512931		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000508653	ENST00000358105		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000508653	ENST00000508675		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
5CDS-intron	ENST00000508653	ENST00000512931		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000444316	ENST00000358105		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
In-frame	ENST00000444316	ENST00000508675		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
5CDS-intron	ENST00000444316	ENST00000512931		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
intron-3CDS	ENST00000510950	ENST00000358105		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
intron-3CDS	ENST00000510950	ENST00000508675		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
intron-intron	ENST00000510950	ENST00000512931		TCGA	RV	PRAD	TCGA-XK-AAJT-01A	BANK1	chr4	102839346	+	C4orf22	chr4	81884671	+
5CDS-intron	ENST00000392446	ENST00000512215		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000392446	ENST00000394854		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000392446	ENST00000323055		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000392446	ENST00000394853		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000392446	ENST00000507176		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000392446	ENST00000523694		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000392446	ENST00000510292		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000512215		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000394854		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000323055		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000394853		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000507176		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000523694		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
5CDS-intron	ENST00000302345	ENST00000510292		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000512215		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000394854		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000323055		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000394853		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000507176		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000523694		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591773	ENST00000510292		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000512215		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000394854		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000323055		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000394853		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000507176		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000523694		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
intron-intron	ENST00000591732	ENST00000510292		TCGA	RV	PRAD	TCGA-VN-A88L-01A	CANT1	chr17	76987799	-	PPP3CA	chr4	102269435	-
In-frame	ENST00000342016	ENST00000409673		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	CIR1	chr2	175260279	-	SCRN3	chr2	175264650	+
In-frame	ENST00000342016	ENST00000272732		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	CIR1	chr2	175260279	-	SCRN3	chr2	175264650	+
5CDS-intron	ENST00000342016	ENST00000548921		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	CIR1	chr2	175260279	-	SCRN3	chr2	175264650	+
In-frame	ENST00000362053	ENST00000409673		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	CIR1	chr2	175260279	-	SCRN3	chr2	175264650	+
In-frame	ENST00000362053	ENST00000272732		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	CIR1	chr2	175260279	-	SCRN3	chr2	175264650	+
5CDS-intron	ENST00000362053	ENST00000548921		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	CIR1	chr2	175260279	-	SCRN3	chr2	175264650	+
5CDS-intron	ENST00000377298	ENST00000257497		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000377298	ENST00000376911		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000377298	ENST00000491192		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000361311	ENST00000257497		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000361311	ENST00000376911		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000361311	ENST00000491192		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000377288	ENST00000257497		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000377288	ENST00000376911		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000377288	ENST00000491192		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000477264	ENST00000257497		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000477264	ENST00000376911		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000477264	ENST00000491192		TCGA	RV	PRAD	TCGA-KK-A6E7-01A	CLSTN1	chr1	9789086	-	ANXA1	chr9	75772570	+
In-frame	ENST00000393043	ENST00000319349		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000393043	ENST00000393664		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000393043	ENST00000538265		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000393043	ENST00000545954		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000393043	ENST00000545089		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000393043	ENST00000591713		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000393043	ENST00000586826		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000269122	ENST00000319349		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000269122	ENST00000393664		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000269122	ENST00000538265		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000269122	ENST00000545954		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000269122	ENST00000545089		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
In-frame	ENST00000269122	ENST00000591713		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000269122	ENST00000586826		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579456	ENST00000319349		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579456	ENST00000393664		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579456	ENST00000538265		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579456	ENST00000545954		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579456	ENST00000545089		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579456	ENST00000591713		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-intron	ENST00000579456	ENST00000586826		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579815	ENST00000319349		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579815	ENST00000393664		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579815	ENST00000538265		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579815	ENST00000545954		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579815	ENST00000545089		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000579815	ENST00000591713		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
intron-intron	ENST00000579815	ENST00000586826		TCGA	RV	PRAD	TCGA-V1-A9ZR-01A	CLTC	chr17	57744338	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000369250	ENST00000432306		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369250	ENST00000393077		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000369250	ENST00000483122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369248	ENST00000432306		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
Frame-shit	ENST00000369248	ENST00000393077		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
5CDS-intron	ENST00000369248	ENST00000483122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000369246	ENST00000432306		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
intron-3CDS	ENST00000369246	ENST00000393077		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
intron-intron	ENST00000369246	ENST00000483122		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FAM160B1	chr10	116596005	+	VTI1A	chr10	114427977	+
In-frame	ENST00000534526	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
In-frame	ENST00000534526	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000531134	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000531134	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000427716	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000427716	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000266482	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000266482	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000546442	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000546442	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000525053	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000525053	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000381025	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000381025	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000472289	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000472289	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000473513	ENST00000081029		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
intron-3CDS	ENST00000473513	ENST00000538315		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	FGD4	chr12	32552893	+	MRPS35	chr12	27867713	+
5CDS-3UTR	ENST00000354955	ENST00000355327		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000354955	ENST00000261862		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000354955	ENST00000357769		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000354955	ENST00000567838		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000493296	ENST00000355327		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
intron-3UTR	ENST00000493296	ENST00000261862		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
intron-intron	ENST00000493296	ENST00000357769		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
intron-intron	ENST00000493296	ENST00000567838		TCGA	RV	PRAD	TCGA-G9-6384-01A	FMOD	chr1	203309756	-	THSD4	chr15	72072881	+
intron-5UTR	ENST00000476233	ENST00000392446		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000476233	ENST00000302345		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000476233	ENST00000591773		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-intron	ENST00000476233	ENST00000591732		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000354667	ENST00000392446		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000354667	ENST00000302345		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000354667	ENST00000591773		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-intron	ENST00000354667	ENST00000591732		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000356674	ENST00000392446		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000356674	ENST00000302345		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-5UTR	ENST00000356674	ENST00000591773		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-intron	ENST00000356674	ENST00000591732		TCGA	RV	PRAD	TCGA-HC-7748-01A	HNRNPA2B1	chr7	26236208	-	CANT1	chr17	76994045	-
intron-3CDS	ENST00000409642	ENST00000535741		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000409642	ENST00000510413		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000409642	ENST00000503716		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000409642	ENST00000357115		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000409642	ENST00000507224		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000409876	ENST00000535741		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000409876	ENST00000510413		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000409876	ENST00000503716		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000409876	ENST00000357115		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000409876	ENST00000507224		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-3CDS	ENST00000409029	ENST00000535741		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-3CDS	ENST00000409029	ENST00000510413		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-intron	ENST00000409029	ENST00000503716		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-intron	ENST00000409029	ENST00000357115		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-intron	ENST00000409029	ENST00000507224		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-3CDS	ENST00000450639	ENST00000535741		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-3CDS	ENST00000450639	ENST00000510413		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-intron	ENST00000450639	ENST00000503716		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-intron	ENST00000450639	ENST00000357115		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-intron	ENST00000450639	ENST00000507224		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000498249	ENST00000535741		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000498249	ENST00000510413		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000498249	ENST00000503716		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000498249	ENST00000357115		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000498249	ENST00000507224		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000280115	ENST00000535741		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-3CDS	ENST00000280115	ENST00000510413		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000280115	ENST00000503716		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000280115	ENST00000357115		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
intron-intron	ENST00000280115	ENST00000507224		TCGA	RV	PRAD	TCGA-EJ-7782-01A	LYPD6B	chr2	149975677	+	LRBA	chr4	151719294	-
5UTR-3CDS	ENST00000296666	ENST00000325630		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	PRRC1	chr5	126853468	+	SPINK6	chr5	147594468	+
5UTR-3CDS	ENST00000442138	ENST00000325630		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	PRRC1	chr5	126853468	+	SPINK6	chr5	147594468	+
5UTR-3CDS	ENST00000512635	ENST00000325630		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	PRRC1	chr5	126853468	+	SPINK6	chr5	147594468	+
intron-3CDS	ENST00000513427	ENST00000325630		TCGA	RV	PRAD	TCGA-YL-A8SH-01B	PRRC1	chr5	126853468	+	SPINK6	chr5	147594468	+
In-frame	ENST00000366690	ENST00000400794		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
In-frame	ENST00000366690	ENST00000361054		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
In-frame	ENST00000366690	ENST00000369962		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
In-frame	ENST00000366690	ENST00000369965		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
In-frame	ENST00000366690	ENST00000357672		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
intron-3CDS	ENST00000473894	ENST00000400794		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
intron-3CDS	ENST00000473894	ENST00000361054		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
intron-3CDS	ENST00000473894	ENST00000369962		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
intron-3CDS	ENST00000473894	ENST00000369965		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
intron-3CDS	ENST00000473894	ENST00000357672		TCGA	RV	PRAD	TCGA-HC-7817-01B	RAB4A	chr1	229424590	+	WDR47	chr1	109533951	-
intron-5UTR	ENST00000430069	ENST00000263967		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TBL1XR1	chr3	176914909	-	PIK3CA	chr3	178916538	+
5UTR-5UTR	ENST00000457928	ENST00000263967		TCGA	RV	PRAD	TCGA-EJ-5507-01A	TBL1XR1	chr3	176914909	-	PIK3CA	chr3	178916538	+
In-frame	ENST00000226230	ENST00000261714		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
In-frame	ENST00000226230	ENST00000394819		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000226230	ENST00000582669		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
5UTR-3CDS	ENST00000583381	ENST00000261714		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
5UTR-3CDS	ENST00000583381	ENST00000394819		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
5UTR-5UTR	ENST00000583381	ENST00000582669		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
In-frame	ENST00000582113	ENST00000261714		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
In-frame	ENST00000582113	ENST00000394819		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
5CDS-5UTR	ENST00000582113	ENST00000582669		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
intron-3CDS	ENST00000336687	ENST00000261714		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
intron-3CDS	ENST00000336687	ENST00000394819		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
intron-5UTR	ENST00000336687	ENST00000582669		TCGA	RV	PRAD	TCGA-HC-7742-01A	TMEM97	chr17	26646391	+	BLMH	chr17	28601215	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5790-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5516-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A7F6-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000281741	ENST00000261783		TCGA	RV	PRAD	TCGA-HC-7233-01A	TXNDC16	chr14	53009089	-	ARG2	chr14	68108903	+
5CDS-3UTR	ENST00000281741	ENST00000556491		TCGA	RV	PRAD	TCGA-HC-7233-01A	TXNDC16	chr14	53009089	-	ARG2	chr14	68108903	+
intron-3CDS	ENST00000554399	ENST00000261783		TCGA	RV	PRAD	TCGA-HC-7233-01A	TXNDC16	chr14	53009089	-	ARG2	chr14	68108903	+
intron-3UTR	ENST00000554399	ENST00000556491		TCGA	RV	PRAD	TCGA-HC-7233-01A	TXNDC16	chr14	53009089	-	ARG2	chr14	68108903	+
5CDS-5UTR	ENST00000376747	ENST00000379705		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000379681		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000338947		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000376747	ENST00000379679		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000426868		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000379673		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000355779		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000358477		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376747	ENST00000447043		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000376747	ENST00000494529		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000379705		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000379681		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000338947		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000376714	ENST00000379679		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000426868		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000379673		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000355779		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000358477		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376714	ENST00000447043		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000376714	ENST00000494529		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000379705		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000379681		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000338947		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000397618	ENST00000379679		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000426868		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000379673		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000355779		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000358477		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000397618	ENST00000447043		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000397618	ENST00000494529		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000379705		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000379681		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000338947		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-intron	ENST00000467305	ENST00000379679		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000426868		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000379673		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000355779		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000358477		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-5UTR	ENST00000467305	ENST00000447043		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
intron-intron	ENST00000467305	ENST00000494529		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000379705		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000379681		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000338947		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000376712	ENST00000379679		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000426868		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000379673		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000355779		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000358477		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-5UTR	ENST00000376712	ENST00000447043		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5CDS-intron	ENST00000376712	ENST00000494529		TCGA	RV	PRAD	TCGA-J9-A52D-01A	UGGT2	chr13	96675294	-	TRPC4	chr13	38357497	-
5UTR-5UTR	ENST00000598312	ENST00000270460		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-5UTR	ENST00000598312	ENST00000085079		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-5UTR	ENST00000598312	ENST00000411543		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-intron	ENST00000598312	ENST00000591743		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-5UTR	ENST00000358067	ENST00000270460		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-5UTR	ENST00000358067	ENST00000085079		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-5UTR	ENST00000358067	ENST00000411543		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
5UTR-intron	ENST00000358067	ENST00000591743		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZNF329	chr19	58653924	-	EPN1	chr19	56189893	+
In-frame	ENST00000353139	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
In-frame	ENST00000360679	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
Frame-shit	ENST00000394406	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
Frame-shit	ENST00000335166	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
intron-3CDS	ENST00000416895	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
In-frame	ENST00000361253	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
intron-3CDS	ENST00000588142	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
intron-3CDS	ENST00000589665	ENST00000250144		TCGA	RV	PRAD	TCGA-V1-A8ML-01A	ACACA	chr17	35454765	-	MMP28	chr17	34106327	-
Frame-shit	ENST00000261769	ENST00000523953		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000261769	ENST00000432364		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000261769	ENST00000542576		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000261769	ENST00000431316		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000261769	ENST00000256119		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000261769	ENST00000523022		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000261769	ENST00000522389		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
5CDS-5UTR	ENST00000261769	ENST00000518341		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000523953		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000432364		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000542576		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000431316		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000256119		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000523022		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
Frame-shit	ENST00000422392	ENST00000522389		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
5CDS-5UTR	ENST00000422392	ENST00000518341		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000523953		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000432364		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000542576		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000431316		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000256119		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000523022		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-3CDS	ENST00000562836	ENST00000522389		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
intron-5UTR	ENST00000562836	ENST00000518341		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	CDH1	chr16	68772314	+	CA1	chr8	86245849	-
5UTR-3CDS	ENST00000393232	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000393232	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000393232	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000393232	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000393232	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000393232	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000353868	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000353868	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000353868	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000353868	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000353868	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000353868	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000539636	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000539636	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000539636	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000539636	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000539636	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000539636	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000311967	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000311967	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000311967	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000311967	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000311967	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000311967	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000223190	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000223190	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000223190	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000223190	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000223190	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
5UTR-3CDS	ENST00000223190	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393230	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393230	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393230	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393230	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393230	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393230	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393231	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393231	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393231	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393231	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393231	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
intron-3CDS	ENST00000393231	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
3UTR-3CDS	ENST00000477428	ENST00000414749		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
3UTR-3CDS	ENST00000477428	ENST00000429400		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
3UTR-3CDS	ENST00000477428	ENST00000395189		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
3UTR-3CDS	ENST00000477428	ENST00000313375		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
3UTR-3CDS	ENST00000477428	ENST00000354613		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
3UTR-3CDS	ENST00000477428	ENST00000434326		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	NRF1	chr7	129251665	+	MLXIPL	chr7	73030507	-
In-frame	ENST00000460934	ENST00000308724		TCGA	RV	PRAD	TCGA-CH-5768-01A	SLC45A3	chr1	205626979	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000460934	ENST00000397120		TCGA	RV	PRAD	TCGA-CH-5768-01A	SLC45A3	chr1	205626979	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000460934	ENST00000556277		TCGA	RV	PRAD	TCGA-CH-5768-01A	SLC45A3	chr1	205626979	-	AP1G2	chr14	24037279	-
In-frame	ENST00000367145	ENST00000308724		TCGA	RV	PRAD	TCGA-CH-5768-01A	SLC45A3	chr1	205626979	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000367145	ENST00000397120		TCGA	RV	PRAD	TCGA-CH-5768-01A	SLC45A3	chr1	205626979	-	AP1G2	chr14	24037279	-
5CDS-intron	ENST00000367145	ENST00000556277		TCGA	RV	PRAD	TCGA-CH-5768-01A	SLC45A3	chr1	205626979	-	AP1G2	chr14	24037279	-
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-A6AQ-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000380752	ENST00000254878		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SLC7A1	chr13	30104675	-	HRSP12	chr8	99120979	-
5CDS-intron	ENST00000380752	ENST00000519155		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SLC7A1	chr13	30104675	-	HRSP12	chr8	99120979	-
intron-3CDS	ENST00000473577	ENST00000254878		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SLC7A1	chr13	30104675	-	HRSP12	chr8	99120979	-
intron-intron	ENST00000473577	ENST00000519155		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SLC7A1	chr13	30104675	-	HRSP12	chr8	99120979	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-XQ-A8TB-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000412460	ENST00000297769		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
5UTR-intron	ENST00000412460	ENST00000297770		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
5UTR-intron	ENST00000412460	ENST00000518549		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
5CDS-intron	ENST00000262210	ENST00000297769		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
5CDS-intron	ENST00000262210	ENST00000297770		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
5CDS-intron	ENST00000262210	ENST00000518549		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
intron-intron	ENST00000521168	ENST00000297769		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
intron-intron	ENST00000521168	ENST00000297770		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
intron-intron	ENST00000521168	ENST00000518549		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	CSPP1	chr8	67976731	+	CPA6	chr8	68346475	-
5CDS-5UTR	ENST00000264235	ENST00000357599		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-5UTR	ENST00000264235	ENST00000195173		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-5UTR	ENST00000264235	ENST00000451055		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-intron	ENST00000264235	ENST00000465147		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-5UTR	ENST00000316626	ENST00000357599		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-5UTR	ENST00000316626	ENST00000195173		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-5UTR	ENST00000316626	ENST00000451055		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5CDS-intron	ENST00000316626	ENST00000465147		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5UTR-5UTR	ENST00000473886	ENST00000357599		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5UTR-5UTR	ENST00000473886	ENST00000195173		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5UTR-5UTR	ENST00000473886	ENST00000451055		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
5UTR-intron	ENST00000473886	ENST00000465147		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122680148	-
In-frame	ENST00000331483	ENST00000369981		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
In-frame	ENST00000331483	ENST00000369985		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
In-frame	ENST00000331483	ENST00000369977		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
In-frame	ENST00000331483	ENST00000369975		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
5CDS-intron	ENST00000331483	ENST00000462633		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000576390	ENST00000369981		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000576390	ENST00000369985		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000576390	ENST00000369977		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000576390	ENST00000369975		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-intron	ENST00000576390	ENST00000462633		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000439918	ENST00000369981		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000439918	ENST00000369985		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000439918	ENST00000369977		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000439918	ENST00000369975		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-intron	ENST00000439918	ENST00000462633		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000472244	ENST00000369981		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000472244	ENST00000369985		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000472244	ENST00000369977		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-3CDS	ENST00000472244	ENST00000369975		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
intron-intron	ENST00000472244	ENST00000462633		TCGA	RV	PRAD	TCGA-EJ-7784-01A	P4HB	chr17	79801037	-	MYO6	chr6	76595721	+
Frame-shit	ENST00000025008	ENST00000412145		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000025008	ENST00000446349		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000025008	ENST00000374541		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000025008	ENST00000262539		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000025008	ENST00000394827		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
5CDS-5UTR	ENST00000025008	ENST00000497739		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000435644	ENST00000412145		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000435644	ENST00000446349		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000435644	ENST00000374541		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000435644	ENST00000262539		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
Frame-shit	ENST00000435644	ENST00000394827		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
5CDS-5UTR	ENST00000435644	ENST00000497739		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
intron-3CDS	ENST00000521611	ENST00000412145		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
intron-3CDS	ENST00000521611	ENST00000446349		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
intron-3CDS	ENST00000521611	ENST00000374541		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
intron-3CDS	ENST00000521611	ENST00000262539		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
intron-3CDS	ENST00000521611	ENST00000394827		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
intron-5UTR	ENST00000521611	ENST00000497739		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
In-frame	ENST00000539297	ENST00000412145		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
In-frame	ENST00000539297	ENST00000446349		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
In-frame	ENST00000539297	ENST00000374541		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
In-frame	ENST00000539297	ENST00000262539		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
In-frame	ENST00000539297	ENST00000394827		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
5CDS-5UTR	ENST00000539297	ENST00000497739		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	RB1CC1	chr8	53580581	-	PTPN3	chr9	112153841	-
5CDS-intron	ENST00000262544	ENST00000484001		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000262544	ENST00000435364		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000262544	ENST00000377681		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000262544	ENST00000489634		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000484001		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000435364		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000377681		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000336714	ENST00000489634		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000484001		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000435364		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000377681		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377475	ENST00000489634		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000484001		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000435364		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000377681		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-intron	ENST00000377465	ENST00000489634		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000484001		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000435364		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000377681		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
3UTR-intron	ENST00000494645	ENST00000489634		TCGA	RV	PRAD	TCGA-CH-5751-01A	SEC23B	chr20	18496380	+	CSRP2BP	chr20	18162354	+
5CDS-3UTR	ENST00000398844	ENST00000593699		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	SEC24A	chr5	133984863	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000398844	ENST00000372499		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	SEC24A	chr5	133984863	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000398844	ENST00000496424		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	SEC24A	chr5	133984863	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000322887	ENST00000593699		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	SEC24A	chr5	133984863	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000322887	ENST00000372499		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	SEC24A	chr5	133984863	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000322887	ENST00000496424		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	SEC24A	chr5	133984863	+	C10orf11	chr10	77795766	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5527-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IA-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000498443	ENST00000291525		TCGA	RV	PRAD	TCGA-HC-7738-01A	TSPAN1	chr1	46651630	+	TFF3	chr21	43735706	-
intron-5UTR	ENST00000498443	ENST00000518498		TCGA	RV	PRAD	TCGA-HC-7738-01A	TSPAN1	chr1	46651630	+	TFF3	chr21	43735706	-
intron-intron	ENST00000498443	ENST00000489676		TCGA	RV	PRAD	TCGA-HC-7738-01A	TSPAN1	chr1	46651630	+	TFF3	chr21	43735706	-
Frame-shit	ENST00000372003	ENST00000291525		TCGA	RV	PRAD	TCGA-HC-7738-01A	TSPAN1	chr1	46651630	+	TFF3	chr21	43735706	-
5CDS-5UTR	ENST00000372003	ENST00000518498		TCGA	RV	PRAD	TCGA-HC-7738-01A	TSPAN1	chr1	46651630	+	TFF3	chr21	43735706	-
5CDS-intron	ENST00000372003	ENST00000489676		TCGA	RV	PRAD	TCGA-HC-7738-01A	TSPAN1	chr1	46651630	+	TFF3	chr21	43735706	-
intron-3CDS	ENST00000216037	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000216037	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000216037	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000216037	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000216037	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000403532	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000403532	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000403532	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000403532	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000403532	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000405219	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405219	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405219	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405219	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000405219	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000344347	ENST00000280326		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000344347	ENST00000503026		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000344347	ENST00000515390		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000344347	ENST00000515676		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
intron-intron	ENST00000344347	ENST00000506600		TCGA	RV	PRAD	TCGA-HC-7736-01A	XBP1	chr22	29190549	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000357430	ENST00000321276		TCGA	RV	PRAD	TCGA-CH-5751-01A	ACSL3	chr2	223725976	+	SGPP2	chr2	223386486	+
5UTR-3CDS	ENST00000392066	ENST00000321276		TCGA	RV	PRAD	TCGA-CH-5751-01A	ACSL3	chr2	223725976	+	SGPP2	chr2	223386486	+
5UTR-intron	ENST00000515059	ENST00000450793		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000538141		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000380180		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000318007		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000437932		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000317968		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000542407		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000508216		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000514743		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-3UTR	ENST00000515059	ENST00000380176		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000359265		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000512274		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
5UTR-intron	ENST00000515059	ENST00000504489		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000450793		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000538141		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000380180		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000318007		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000437932		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000317968		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000542407		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000508216		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000514743		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-3UTR	ENST00000440890	ENST00000380176		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000359265		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000512274		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000440890	ENST00000504489		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000450793		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000538141		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000380180		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000318007		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000437932		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000317968		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000542407		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000508216		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000514743		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-3UTR	ENST00000264568	ENST00000380176		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000359265		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000512274		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000264568	ENST00000504489		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000450793		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000538141		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000380180		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000318007		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000437932		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000317968		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000542407		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000508216		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000514743		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-3UTR	ENST00000394931	ENST00000380176		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000359265		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000512274		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000394931	ENST00000504489		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000450793		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000538141		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000380180		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000318007		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000437932		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000317968		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000542407		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000508216		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000514743		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-3UTR	ENST00000502683	ENST00000380176		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000359265		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000512274		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
intron-intron	ENST00000502683	ENST00000504489		TCGA	RV	PRAD	TCGA-EJ-7330-01A	BMPR1B	chr4	95679219	+	PDLIM5	chr4	95561427	+
Frame-shit	ENST00000256443	ENST00000216487		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5CDS-3UTR	ENST00000256443	ENST00000418924		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5CDS-intron	ENST00000256443	ENST00000557762		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
Frame-shit	ENST00000514676	ENST00000216487		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5CDS-3UTR	ENST00000514676	ENST00000418924		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5CDS-intron	ENST00000514676	ENST00000557762		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5UTR-3CDS	ENST00000502604	ENST00000216487		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5UTR-3UTR	ENST00000502604	ENST00000418924		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
5UTR-intron	ENST00000502604	ENST00000557762		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
3UTR-3CDS	ENST00000513629	ENST00000216487		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
3UTR-3UTR	ENST00000513629	ENST00000418924		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
3UTR-intron	ENST00000513629	ENST00000557762		TCGA	RV	PRAD	TCGA-VN-A88K-01A	CDK7	chr5	68531280	+	RIN3	chr14	93107583	+
intron-3CDS	ENST00000508032	ENST00000430479		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000399357		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000420159		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000343495		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000242066		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000405192		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000405358		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000403527		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000405218		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-intron	ENST00000508032	ENST00000403685		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
intron-5UTR	ENST00000508032	ENST00000476720		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
Frame-shit	ENST00000336812	ENST00000430479		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000399357		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000420159		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000343495		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000242066		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000405192		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000405358		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000403527		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000405218		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000336812	ENST00000403685		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-5UTR	ENST00000336812	ENST00000476720		TCGA	RV	PRAD	TCGA-G9-6339-01A	DHX15	chr4	24585946	-	ETV1	chr7	13975521	-
5CDS-intron	ENST00000357992	ENST00000340781		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000357992	ENST00000367135		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000357992	ENST00000367134		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-intron	ENST00000289703	ENST00000340781		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000289703	ENST00000367135		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000289703	ENST00000367134		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-intron	ENST00000468523	ENST00000340781		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-5UTR	ENST00000468523	ENST00000367135		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-5UTR	ENST00000468523	ENST00000367134		TCGA	RV	PRAD	TCGA-HC-8265-01B	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-intron	ENST00000361488	ENST00000413918		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000361488	ENST00000353548		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000361488	ENST00000443649		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000361488	ENST00000464942		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000361488	ENST00000267169		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000361488	ENST00000475784		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
3UTR-intron	ENST00000520369	ENST00000413918		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
3UTR-intron	ENST00000520369	ENST00000353548		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
3UTR-intron	ENST00000520369	ENST00000443649		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
3UTR-intron	ENST00000520369	ENST00000464942		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
3UTR-intron	ENST00000520369	ENST00000267169		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
3UTR-intron	ENST00000520369	ENST00000475784		TCGA	RV	PRAD	TCGA-EJ-5526-01A	FAM110B	chr8	58907365	+	DIABLO	chr12	122702944	-
In-frame	ENST00000314167	ENST00000402693		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	GAK	chr4	875695	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000314167	ENST00000388824		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	GAK	chr4	875695	-	MEX3D	chr19	1556922	-
In-frame	ENST00000511163	ENST00000402693		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	GAK	chr4	875695	-	MEX3D	chr19	1556922	-
Frame-shit	ENST00000511163	ENST00000388824		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	GAK	chr4	875695	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000509566	ENST00000402693		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	GAK	chr4	875695	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000509566	ENST00000388824		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	GAK	chr4	875695	-	MEX3D	chr19	1556922	-
intron-intron	ENST00000391976	ENST00000348513		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000544009		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000431889		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000580419		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000377808		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000400122		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000578044		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391976	ENST00000474246		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000348513		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000544009		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000431889		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000580419		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000377808		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000400122		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000578044		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000310931	ENST00000474246		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000348513		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000544009		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000431889		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000580419		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000377808		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000400122		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000578044		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000391975	ENST00000474246		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000348513		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000544009		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000431889		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000580419		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000377808		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000400122		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000578044		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5CDS-intron	ENST00000427183	ENST00000474246		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000348513		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000544009		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000431889		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000580419		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000377808		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000400122		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000578044		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
intron-intron	ENST00000476807	ENST00000474246		TCGA	RV	PRAD	TCGA-EJ-7328-01A	HDLBP	chr2	242168637	-	SMARCE1	chr17	38786538	-
5UTR-3CDS	ENST00000356341	ENST00000281038		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
5UTR-5UTR	ENST00000356341	ENST00000528850		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
intron-3CDS	ENST00000530617	ENST00000281038		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
intron-5UTR	ENST00000530617	ENST00000528850		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
5UTR-3CDS	ENST00000278568	ENST00000281038		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
5UTR-5UTR	ENST00000278568	ENST00000528850		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
intron-3CDS	ENST00000528203	ENST00000281038		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
intron-5UTR	ENST00000528203	ENST00000528850		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
intron-3CDS	ENST00000525542	ENST00000281038		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
intron-5UTR	ENST00000525542	ENST00000528850		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	PAK1	chr11	77184597	-	NARS2	chr11	78282489	-
5CDS-intron	ENST00000400520	ENST00000513761		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000400520	ENST00000347613		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000400520	ENST00000360642		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000400520	ENST00000504131		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000400520	ENST00000506924		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000496748	ENST00000513761		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000496748	ENST00000347613		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000496748	ENST00000360642		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000496748	ENST00000504131		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000496748	ENST00000506924		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000375111	ENST00000513761		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000375111	ENST00000347613		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000375111	ENST00000360642		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000375111	ENST00000504131		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000375111	ENST00000506924		TCGA	RV	PRAD	TCGA-EJ-5527-01A	PLA2G2A	chr1	20301925	-	CLCN3	chr4	170623929	+
Frame-shit	ENST00000356948	ENST00000348165		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
5CDS-intron	ENST00000356948	ENST00000389103		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
intron-3CDS	ENST00000350092	ENST00000348165		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
intron-intron	ENST00000350092	ENST00000389103		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
Frame-shit	ENST00000349038	ENST00000348165		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
5CDS-intron	ENST00000349038	ENST00000389103		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
Frame-shit	ENST00000394601	ENST00000348165		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
5CDS-intron	ENST00000394601	ENST00000389103		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	803636	+	UBE3C	chr7	157009561	+
In-frame	ENST00000371142	ENST00000413330		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TM9SF3	chr10	98346491	-	RPP30	chr10	92655637	+
In-frame	ENST00000371142	ENST00000371703		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TM9SF3	chr10	98346491	-	RPP30	chr10	92655637	+
5CDS-3UTR	ENST00000371142	ENST00000489806		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TM9SF3	chr10	98346491	-	RPP30	chr10	92655637	+
intron-3CDS	ENST00000490192	ENST00000413330		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TM9SF3	chr10	98346491	-	RPP30	chr10	92655637	+
intron-3CDS	ENST00000490192	ENST00000371703		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TM9SF3	chr10	98346491	-	RPP30	chr10	92655637	+
intron-3UTR	ENST00000490192	ENST00000489806		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TM9SF3	chr10	98346491	-	RPP30	chr10	92655637	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5496-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5522-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7325-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6342-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000413465	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000413465	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000413465	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000413465	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-5UTR	ENST00000413465	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000359597	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000359597	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000359597	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000359597	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-5UTR	ENST00000359597	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000269305	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000269305	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000269305	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000269305	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-5UTR	ENST00000269305	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000455263	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000455263	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000455263	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000455263	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-5UTR	ENST00000455263	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000420246	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000420246	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000420246	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000420246	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-5UTR	ENST00000420246	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000445888	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000445888	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000445888	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-3CDS	ENST00000445888	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5UTR-5UTR	ENST00000445888	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000574684	ENST00000361413		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000574684	ENST00000542606		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000574684	ENST00000572370		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-3CDS	ENST00000574684	ENST00000589033		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
intron-5UTR	ENST00000574684	ENST00000575027		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TP53	chr17	7590695	-	KIAA0753	chr17	6498373	-
5CDS-5UTR	ENST00000336375	ENST00000457913		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000336375	ENST00000277225		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000336375	ENST00000441147		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000336375	ENST00000542028		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000336375	ENST00000497489		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000475741	ENST00000457913		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000475741	ENST00000277225		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000475741	ENST00000441147		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000475741	ENST00000542028		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000475741	ENST00000497489		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000351273	ENST00000457913		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000351273	ENST00000277225		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000351273	ENST00000441147		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000351273	ENST00000542028		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000351273	ENST00000497489		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-5UTR	ENST00000489084	ENST00000457913		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-5UTR	ENST00000489084	ENST00000277225		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-intron	ENST00000489084	ENST00000441147		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-intron	ENST00000489084	ENST00000542028		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
3UTR-intron	ENST00000489084	ENST00000497489		TCGA	RV	PRAD	TCGA-WW-A8ZI-01A	ACPP	chr3	132036420	+	ZNF462	chr9	109685635	+
In-frame	ENST00000284049	ENST00000506729		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000284049	ENST00000379807		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000284049	ENST00000389019		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000284049	ENST00000513675		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
In-frame	ENST00000284049	ENST00000379810		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
5CDS-intron	ENST00000284049	ENST00000514551		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000511067	ENST00000506729		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000511067	ENST00000379807		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000511067	ENST00000389019		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000511067	ENST00000513675		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
intron-3CDS	ENST00000511067	ENST00000379810		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
intron-intron	ENST00000511067	ENST00000514551		TCGA	RV	PRAD	TCGA-HC-A6AP-01A	CHD1	chr5	98228229	-	SLCO6A1	chr5	101748847	-
5CDS-5UTR	ENST00000225719	ENST00000592983		TCGA	RV	PRAD	TCGA-CH-5740-01A	CPD	chr17	28706744	+	PIGW	chr17	34892943	+
5CDS-5UTR	ENST00000225719	ENST00000328396		TCGA	RV	PRAD	TCGA-CH-5740-01A	CPD	chr17	28706744	+	PIGW	chr17	34892943	+
intron-5UTR	ENST00000543464	ENST00000592983		TCGA	RV	PRAD	TCGA-CH-5740-01A	CPD	chr17	28706744	+	PIGW	chr17	34892943	+
intron-5UTR	ENST00000543464	ENST00000328396		TCGA	RV	PRAD	TCGA-CH-5740-01A	CPD	chr17	28706744	+	PIGW	chr17	34892943	+
intron-5UTR	ENST00000584051	ENST00000592983		TCGA	RV	PRAD	TCGA-CH-5740-01A	CPD	chr17	28706744	+	PIGW	chr17	34892943	+
intron-5UTR	ENST00000584051	ENST00000328396		TCGA	RV	PRAD	TCGA-CH-5740-01A	CPD	chr17	28706744	+	PIGW	chr17	34892943	+
Frame-shit	ENST00000246069	ENST00000377452		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	DSTN	chr20	17550856	+	DTD1	chr20	18724744	+
5CDS-intron	ENST00000246069	ENST00000494921		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	DSTN	chr20	17550856	+	DTD1	chr20	18724744	+
5UTR-3CDS	ENST00000474024	ENST00000377452		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	DSTN	chr20	17550856	+	DTD1	chr20	18724744	+
5UTR-intron	ENST00000474024	ENST00000494921		TCGA	RV	PRAD	TCGA-KK-A7AU-01A	DSTN	chr20	17550856	+	DTD1	chr20	18724744	+
5UTR-3CDS	ENST00000469606	ENST00000366991		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
5UTR-3CDS	ENST00000469606	ENST00000542077		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
5UTR-3UTR	ENST00000469606	ENST00000475419		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000366994	ENST00000366991		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000366994	ENST00000542077		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
5CDS-3UTR	ENST00000366994	ENST00000475419		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000366993	ENST00000366991		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000366993	ENST00000542077		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
5CDS-3UTR	ENST00000366993	ENST00000475419		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000366992	ENST00000366991		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000366992	ENST00000542077		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
5CDS-3UTR	ENST00000366992	ENST00000475419		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000440600	ENST00000366991		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
Frame-shit	ENST00000440600	ENST00000542077		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
5CDS-3UTR	ENST00000440600	ENST00000475419		TCGA	RV	PRAD	TCGA-CH-5752-01A	INTS7	chr1	212208686	-	DTL	chr1	212236226	+
3UTR-5UTR	ENST00000467771	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
3UTR-5UTR	ENST00000467771	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
3UTR-5UTR	ENST00000467771	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000271620	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000271620	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000271620	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000271619	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000271619	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5CDS-5UTR	ENST00000271619	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368937	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368937	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368937	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368936	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368936	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368936	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368935	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368935	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
5UTR-5UTR	ENST00000368935	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000368934	ENST00000265062		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000368934	ENST00000482525		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
intron-5UTR	ENST00000368934	ENST00000485280		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	PRUNE	chr1	150981147	+	RAB7A	chr3	128514203	+
Frame-shit	ENST00000368226	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000368226	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368226	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000368226	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000368227	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000368227	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368227	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000368227	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000532331	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000532331	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000532331	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000532331	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000368213	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000368213	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368213	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000368213	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000368210	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000368210	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368210	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000368210	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000368215	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000368215	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368215	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000368215	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000368207	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
In-frame	ENST00000368207	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-3UTR	ENST00000368207	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5CDS-5UTR	ENST00000368207	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3CDS	ENST00000524481	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3CDS	ENST00000524481	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-3UTR	ENST00000524481	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
5UTR-5UTR	ENST00000524481	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000525459	ENST00000454859		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3CDS	ENST00000525459	ENST00000474289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000528402		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000454591		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000368291		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000309620		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000430841		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000368289		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-3UTR	ENST00000525459	ENST00000531967		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
intron-5UTR	ENST00000525459	ENST00000488087		TCGA	RV	PRAD	TCGA-G9-6333-01A	PTPRK	chr6	128561180	-	ECHDC1	chr6	127611422	-
Frame-shit	ENST00000325954	ENST00000221801		TCGA	RV	PRAD	TCGA-G9-6378-01A	RNF10	chr12	120972771	+	FBL	chr19	40325453	-
5CDS-5UTR	ENST00000325954	ENST00000593503		TCGA	RV	PRAD	TCGA-G9-6378-01A	RNF10	chr12	120972771	+	FBL	chr19	40325453	-
Frame-shit	ENST00000413266	ENST00000221801		TCGA	RV	PRAD	TCGA-G9-6378-01A	RNF10	chr12	120972771	+	FBL	chr19	40325453	-
5CDS-5UTR	ENST00000413266	ENST00000593503		TCGA	RV	PRAD	TCGA-G9-6378-01A	RNF10	chr12	120972771	+	FBL	chr19	40325453	-
intron-3CDS	ENST00000542701	ENST00000221801		TCGA	RV	PRAD	TCGA-G9-6378-01A	RNF10	chr12	120972771	+	FBL	chr19	40325453	-
intron-5UTR	ENST00000542701	ENST00000593503		TCGA	RV	PRAD	TCGA-G9-6378-01A	RNF10	chr12	120972771	+	FBL	chr19	40325453	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7209-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-QU-A6IN-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000489714	ENST00000375458		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
5UTR-3CDS	ENST00000489714	ENST00000342193		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
5UTR-3CDS	ENST00000489714	ENST00000409184		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
5UTR-3CDS	ENST00000489714	ENST00000392717		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
5UTR-3CDS	ENST00000489714	ENST00000194871		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
5UTR-intron	ENST00000489714	ENST00000491126		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
3UTR-3CDS	ENST00000536175	ENST00000375458		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
3UTR-3CDS	ENST00000536175	ENST00000342193		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
3UTR-3CDS	ENST00000536175	ENST00000409184		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
3UTR-3CDS	ENST00000536175	ENST00000392717		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
3UTR-3CDS	ENST00000536175	ENST00000194871		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
3UTR-intron	ENST00000536175	ENST00000491126		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
intron-3CDS	ENST00000243344	ENST00000375458		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
intron-3CDS	ENST00000243344	ENST00000342193		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
intron-3CDS	ENST00000243344	ENST00000409184		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
intron-3CDS	ENST00000243344	ENST00000392717		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
intron-3CDS	ENST00000243344	ENST00000194871		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
intron-intron	ENST00000243344	ENST00000491126		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TTC21B	chr2	166714725	-	COBLL1	chr2	165600385	-
Frame-shit	ENST00000356136	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
5CDS-5UTR	ENST00000356136	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
Frame-shit	ENST00000528420	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
5CDS-5UTR	ENST00000528420	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-3CDS	ENST00000533454	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-5UTR	ENST00000533454	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-3CDS	ENST00000531818	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-5UTR	ENST00000531818	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-3CDS	ENST00000532130	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-5UTR	ENST00000532130	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-3CDS	ENST00000539288	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-5UTR	ENST00000539288	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
3UTR-3CDS	ENST00000525872	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
3UTR-5UTR	ENST00000525872	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-3CDS	ENST00000538870	ENST00000299299		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-5UTR	ENST00000538870	ENST00000493228		TCGA	RV	PRAD	TCGA-G9-6361-01A	UVRAG	chr11	75623083	+	PCBD1	chr10	72643805	-
intron-3CDS	ENST00000402530	ENST00000019317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	ANO7	chr2	242157796	+	RALBP1	chr18	9530832	+
intron-3CDS	ENST00000402530	ENST00000383432		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	ANO7	chr2	242157796	+	RALBP1	chr18	9530832	+
Frame-shit	ENST00000274979	ENST00000019317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	ANO7	chr2	242157796	+	RALBP1	chr18	9530832	+
Frame-shit	ENST00000274979	ENST00000383432		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	ANO7	chr2	242157796	+	RALBP1	chr18	9530832	+
Frame-shit	ENST00000402430	ENST00000019317		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	ANO7	chr2	242157796	+	RALBP1	chr18	9530832	+
Frame-shit	ENST00000402430	ENST00000383432		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	ANO7	chr2	242157796	+	RALBP1	chr18	9530832	+
Frame-shit	ENST00000261726	ENST00000316803		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
Frame-shit	ENST00000261726	ENST00000288616		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
Frame-shit	ENST00000261726	ENST00000351200		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
Frame-shit	ENST00000261726	ENST00000453000		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
3UTR-3CDS	ENST00000551604	ENST00000316803		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
3UTR-3CDS	ENST00000551604	ENST00000288616		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
3UTR-3CDS	ENST00000551604	ENST00000351200		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
3UTR-3CDS	ENST00000551604	ENST00000453000		TCGA	RV	PRAD	TCGA-VP-A872-01A	CUX2	chr12	111701643	+	CABP1	chr12	121097681	+
In-frame	ENST00000256497	ENST00000282541		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	EDEM1	chr3	5229999	+	GPD1L	chr3	32169568	+
intron-3CDS	ENST00000445686	ENST00000282541		TCGA	RV	PRAD	TCGA-KK-A8I6-01A	EDEM1	chr3	5229999	+	GPD1L	chr3	32169568	+
5CDS-intron	ENST00000325321	ENST00000371754		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000325321	ENST00000469991		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000325321	ENST00000371752		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000325321	ENST00000396105		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000391810	ENST00000371754		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000391810	ENST00000469991		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000391810	ENST00000371752		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000391810	ENST00000396105		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000358049	ENST00000371754		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000358049	ENST00000469991		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000358049	ENST00000371752		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000358049	ENST00000396105		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000597509	ENST00000371754		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000597509	ENST00000469991		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000597509	ENST00000371752		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000597509	ENST00000396105		TCGA	RV	PRAD	TCGA-QU-A6IP-01A	KLK2	chr19	51383822	+	ZNFX1	chr20	47863418	-
5CDS-5UTR	ENST00000335512	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335512	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335512	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335512	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000539837	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000539837	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000539837	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000539837	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000470987	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000470987	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000470987	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000470987	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000291539	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000291539	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000291539	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000291539	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398236	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398236	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398236	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398236	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398229	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398229	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398229	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398229	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398234	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398234	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398234	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398234	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398232	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398232	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398232	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398232	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398227	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398227	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398227	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398227	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398225	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398225	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398225	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398225	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000380328	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000380328	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000380328	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000380328	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000328862	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000328862	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000328862	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000328862	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335440	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335440	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335440	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000335440	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398224	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398224	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398224	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000398224	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000349112	ENST00000332149		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000349112	ENST00000398585		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000349112	ENST00000458356		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000349112	ENST00000497881		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	PDE9A	chr21	44153536	+	TMPRSS2	chr21	42870116	-
Frame-shit	ENST00000319172	ENST00000470610		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
Frame-shit	ENST00000319172	ENST00000389672		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
Frame-shit	ENST00000319172	ENST00000542517		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
5CDS-intron	ENST00000319172	ENST00000514100		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
5CDS-intron	ENST00000319172	ENST00000502694		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
5CDS-intron	ENST00000319172	ENST00000442602		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-3CDS	ENST00000486159	ENST00000470610		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-3CDS	ENST00000486159	ENST00000389672		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-3CDS	ENST00000486159	ENST00000542517		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-intron	ENST00000486159	ENST00000514100		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-intron	ENST00000486159	ENST00000502694		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-intron	ENST00000486159	ENST00000442602		TCGA	RV	PRAD	TCGA-EJ-5505-01A	TMEM39A	chr3	119171294	-	EPHA6	chr3	96706174	+
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42878372	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7231-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8II-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42878372	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000425792	ENST00000494118		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	UBE2E2	chr3	23258803	+	ZNF385D	chr3	21706520	-
5CDS-intron	ENST00000425792	ENST00000281523		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	UBE2E2	chr3	23258803	+	ZNF385D	chr3	21706520	-
5CDS-intron	ENST00000396703	ENST00000494118		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	UBE2E2	chr3	23258803	+	ZNF385D	chr3	21706520	-
5CDS-intron	ENST00000396703	ENST00000281523		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	UBE2E2	chr3	23258803	+	ZNF385D	chr3	21706520	-
Frame-shit	ENST00000395996	ENST00000431975		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000541650		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000366358		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000368123		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000537868		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000263050		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000342266		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000395996	ENST00000474850		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
Frame-shit	ENST00000358544	ENST00000431975		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000541650		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000366358		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000368123		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000537868		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000263050		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000342266		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000358544	ENST00000474850		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
Frame-shit	ENST00000357162	ENST00000431975		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000541650		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000366358		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000368123		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000537868		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000263050		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000342266		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000357162	ENST00000474850		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
Frame-shit	ENST00000355155	ENST00000431975		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000541650		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000366358		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000368123		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000537868		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000263050		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000342266		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
5CDS-intron	ENST00000355155	ENST00000474850		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-3CDS	ENST00000441350	ENST00000431975		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000541650		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000366358		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000368123		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000537868		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000263050		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000342266		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000441350	ENST00000474850		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-3CDS	ENST00000521932	ENST00000431975		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000541650		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000366358		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000368123		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000537868		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000263050		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000342266		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000521932	ENST00000474850		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	VPS13B	chr8	100148980	+	AKAP7	chr6	131602670	+
intron-intron	ENST00000530124	ENST00000371754		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000530124	ENST00000469991		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000530124	ENST00000371752		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000530124	ENST00000396105		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000257247	ENST00000371754		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000257247	ENST00000469991		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000257247	ENST00000371752		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000257247	ENST00000396105		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000525875	ENST00000371754		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-intron	ENST00000525875	ENST00000469991		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000525875	ENST00000371752		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000525875	ENST00000396105		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000378024	ENST00000371754		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000378024	ENST00000469991		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000378024	ENST00000371752		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000378024	ENST00000396105		TCGA	RV	PRAD	TCGA-EJ-7784-01A	AHNAK	chr11	62283375	-	ZNFX1	chr20	47863418	-
In-frame	ENST00000316448	ENST00000374825		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000496118		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000580234		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000374831		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000395289		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000443797		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000395287		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000449085		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000438194		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000466744		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000383108		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000547895		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000549843		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000442863		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000552513		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000442219		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000498329		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000488549		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000425201		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000399529		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000399528		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000550142		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000548837		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000399527		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000549236		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000482105		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000414731		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000449118		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000550598		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000479973		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000546777		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000450320		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000547286		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000552587		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000549126		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000553146		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000448067		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000436979		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
5CDS-intron	ENST00000316448	ENST00000466208		TCGA	RV	PRAD	TCGA-KK-A6E5-01A	CALR	chr19	13055304	+	BRD2	chr6	32944339	+
Frame-shit	ENST00000205402	ENST00000535157		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000205402	ENST00000377246		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000205402	ENST00000349847		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5CDS-3UTR	ENST00000205402	ENST00000469982		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5UTR-3CDS	ENST00000537148	ENST00000535157		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5UTR-3CDS	ENST00000537148	ENST00000377246		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5UTR-3CDS	ENST00000537148	ENST00000349847		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5UTR-3UTR	ENST00000537148	ENST00000469982		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000440410	ENST00000535157		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000440410	ENST00000377246		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000440410	ENST00000349847		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5CDS-3UTR	ENST00000440410	ENST00000469982		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000437604	ENST00000535157		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000437604	ENST00000377246		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000437604	ENST00000349847		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
5CDS-3UTR	ENST00000437604	ENST00000469982		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
intron-3CDS	ENST00000494441	ENST00000535157		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
intron-3CDS	ENST00000494441	ENST00000377246		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
intron-3CDS	ENST00000494441	ENST00000349847		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
intron-3UTR	ENST00000494441	ENST00000469982		TCGA	RV	PRAD	TCGA-VN-A88L-01A	DLD	chr7	107531734	+	SCEL	chr13	78171680	+
Frame-shit	ENST00000374864	ENST00000374820		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5CDS-3UTR	ENST00000374864	ENST00000452740		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5CDS-intron	ENST00000374864	ENST00000480175		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
Frame-shit	ENST00000535650	ENST00000374820		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5CDS-3UTR	ENST00000535650	ENST00000452740		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5CDS-intron	ENST00000535650	ENST00000480175		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
Frame-shit	ENST00000262650	ENST00000374820		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5CDS-3UTR	ENST00000262650	ENST00000452740		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5CDS-intron	ENST00000262650	ENST00000480175		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
intron-3CDS	ENST00000483727	ENST00000374820		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
intron-3UTR	ENST00000483727	ENST00000452740		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
intron-intron	ENST00000483727	ENST00000480175		TCGA	RV	PRAD	TCGA-HC-7752-01A	ITCH	chr20	33028149	+	PIGU	chr20	33148783	-
5UTR-3CDS	ENST00000159111	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000159111	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000159111	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000159111	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000159111	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000159111	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000159111	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-3CDS	ENST00000381759	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000536461	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000373996		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000313400		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000361209		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000361477		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000288520		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000341734		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
intron-3CDS	ENST00000592175	ENST00000358637		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	KDM4B	chr19	4969241	+	ASTN2	chr9	119382722	-
5UTR-5UTR	ENST00000300557	ENST00000346213		TCGA	RV	PRAD	TCGA-G9-6348-01A	PRR15L	chr17	46035023	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000300557	ENST00000393860		TCGA	RV	PRAD	TCGA-G9-6348-01A	PRR15L	chr17	46035023	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000300557	ENST00000547517		TCGA	RV	PRAD	TCGA-G9-6348-01A	PRR15L	chr17	46035023	-	RAB5C	chr17	40282608	-
intron-3CDS	ENST00000389462	ENST00000346169		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000414031		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000392537		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000382330		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000350481		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000352767		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000427845		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000342981		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000319274		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000424196		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000411531		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000441154		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000434061		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000389462	ENST00000435046		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000346169		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000414031		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000392537		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000382330		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000350481		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000352767		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000427845		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000342981		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000319274		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000424196		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000411531		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000441154		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000434061		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
intron-3CDS	ENST00000309083	ENST00000435046		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000346169		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000414031		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000392537		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000382330		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000350481		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000352767		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000427845		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000342981		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000319274		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000424196		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000411531		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000441154		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000434061		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
Frame-shit	ENST00000538057	ENST00000435046		TCGA	RV	PRAD	TCGA-EJ-A7NJ-01A	PTMS	chr12	6880118	+	EIF4G1	chr3	184042892	+
5CDS-5UTR	ENST00000404826	ENST00000258711		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SDK1	chr7	3861215	+	CHST12	chr7	2472198	+
5CDS-5UTR	ENST00000389531	ENST00000258711		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SDK1	chr7	3861215	+	CHST12	chr7	2472198	+
intron-5UTR	ENST00000466611	ENST00000258711		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SDK1	chr7	3861215	+	CHST12	chr7	2472198	+
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A9DQ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000430069	ENST00000466620		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
intron-intron	ENST00000430069	ENST00000379861		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
intron-intron	ENST00000430069	ENST00000356518		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
intron-intron	ENST00000430069	ENST00000350009		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
5UTR-intron	ENST00000457928	ENST00000466620		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
5UTR-intron	ENST00000457928	ENST00000379861		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
5UTR-intron	ENST00000457928	ENST00000356518		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
5UTR-intron	ENST00000457928	ENST00000350009		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TBL1XR1	chr3	176914909	-	ADAM33	chr20	3657790	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5794-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7797-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A872-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000335263	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000335263	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000335263	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000424963	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000424963	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000424963	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000322340	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000322340	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000322340	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5UTR-3CDS	ENST00000499851	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5UTR-3CDS	ENST00000499851	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5UTR-intron	ENST00000499851	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000342702	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000342702	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000342702	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000556807	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000556807	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000556807	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000558567	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000558567	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000558567	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000299135	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000299135	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000299135	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000454394	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000454394	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000454394	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000556511	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
Frame-shit	ENST00000556511	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
5CDS-intron	ENST00000556511	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
3UTR-3CDS	ENST00000557186	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
3UTR-3CDS	ENST00000557186	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
3UTR-intron	ENST00000557186	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
intron-3CDS	ENST00000545563	ENST00000359591		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
intron-3CDS	ENST00000545563	ENST00000546834		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
intron-intron	ENST00000545563	ENST00000470660		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	WDR20	chr14	102606509	+	LRP10	chr14	23341947	+
In-frame	ENST00000318130	ENST00000541565		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
In-frame	ENST00000318130	ENST00000413764		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000391905		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000537898		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000545154		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000545781		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000308852		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000261458		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000367010		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000318130	ENST00000367009		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
In-frame	ENST00000367512	ENST00000541565		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
In-frame	ENST00000367512	ENST00000413764		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000391905		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000537898		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000545154		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000545781		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000308852		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000261458		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000367010		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5CDS-intron	ENST00000367512	ENST00000367009		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-3CDS	ENST00000466392	ENST00000541565		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-3CDS	ENST00000466392	ENST00000413764		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000391905		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000537898		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000545154		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000545781		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000308852		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000261458		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000367010		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
5UTR-intron	ENST00000466392	ENST00000367009		TCGA	RV	PRAD	TCGA-EJ-5518-01A	EDEM3	chr1	184677287	-	HHAT	chr1	210847630	+
intron-3CDS	ENST00000391976	ENST00000379802		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000391976	ENST00000418664		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000310931	ENST00000379802		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000310931	ENST00000418664		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000391975	ENST00000379802		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000391975	ENST00000418664		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
In-frame	ENST00000427183	ENST00000379802		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
In-frame	ENST00000427183	ENST00000418664		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000476807	ENST00000379802		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
intron-3CDS	ENST00000476807	ENST00000418664		TCGA	RV	PRAD	TCGA-EJ-7218-01B	HDLBP	chr2	242168639	-	DSP	chr6	7575528	+
In-frame	ENST00000375571	ENST00000398022		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	MAPRE1	chr20	31427662	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375571	ENST00000217315		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	MAPRE1	chr20	31427662	+	TM9SF4	chr20	30720816	+
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B2-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000265293	ENST00000308624		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
5CDS-intron	ENST00000265293	ENST00000407292		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
5CDS-3UTR	ENST00000265293	ENST00000467759		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
Frame-shit	ENST00000521089	ENST00000308624		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
5CDS-intron	ENST00000521089	ENST00000407292		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
5CDS-3UTR	ENST00000521089	ENST00000467759		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
intron-3CDS	ENST00000522140	ENST00000308624		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
intron-intron	ENST00000522140	ENST00000407292		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
intron-3UTR	ENST00000522140	ENST00000467759		TCGA	RV	PRAD	TCGA-J4-A83J-01A	WWC1	chr5	167841595	+	SNTG2	chr2	1161234	+
In-frame	ENST00000372037	ENST00000453258		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
In-frame	ENST00000372037	ENST00000543964		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
In-frame	ENST00000372037	ENST00000371207		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
5CDS-5UTR	ENST00000372037	ENST00000371203		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
5CDS-5UTR	ENST00000372037	ENST00000539125		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
5CDS-5UTR	ENST00000372037	ENST00000371205		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
5CDS-3UTR	ENST00000372037	ENST00000490659		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-3CDS	ENST00000480152	ENST00000453258		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-3CDS	ENST00000480152	ENST00000543964		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-3CDS	ENST00000480152	ENST00000371207		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-5UTR	ENST00000480152	ENST00000371203		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-5UTR	ENST00000480152	ENST00000539125		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-5UTR	ENST00000480152	ENST00000371205		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
intron-3UTR	ENST00000480152	ENST00000490659		TCGA	RV	PRAD	TCGA-HC-7231-01A	BMPR1A	chr10	88659883	+	ENTPD1	chr10	97604233	+
5UTR-3CDS	ENST00000361488	ENST00000288368		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	FAM110B	chr8	58907365	+	PREX2	chr8	69103957	+
5UTR-intron	ENST00000361488	ENST00000529398		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	FAM110B	chr8	58907365	+	PREX2	chr8	69103957	+
3UTR-3CDS	ENST00000520369	ENST00000288368		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	FAM110B	chr8	58907365	+	PREX2	chr8	69103957	+
3UTR-intron	ENST00000520369	ENST00000529398		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	FAM110B	chr8	58907365	+	PREX2	chr8	69103957	+
Frame-shit	ENST00000380737	ENST00000544260		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000380737	ENST00000381869		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000380737	ENST00000381861		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000380737	ENST00000262102		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000380737	ENST00000519263		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000380737	ENST00000400046		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000380737	ENST00000297488		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
5CDS-intron	ENST00000380737	ENST00000518713		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
5CDS-intron	ENST00000380737	ENST00000381862		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000544260		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000381869		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000381861		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000262102		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000519263		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000400046		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
Frame-shit	ENST00000315985	ENST00000297488		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
5CDS-intron	ENST00000315985	ENST00000518713		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
5CDS-intron	ENST00000315985	ENST00000381862		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000544260		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000381869		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000381861		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000262102		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000519263		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000400046		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-3CDS	ENST00000523473	ENST00000297488		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-intron	ENST00000523473	ENST00000518713		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
3UTR-intron	ENST00000523473	ENST00000381862		TCGA	RV	PRAD	TCGA-EJ-7328-01A	PPP2R2A	chr8	26151256	+	MTUS1	chr8	17504588	-
In-frame	ENST00000336735	ENST00000251089		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SEL1L	chr14	81952016	-	ANGEL1	chr14	77275986	-
5CDS-intron	ENST00000336735	ENST00000557179		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SEL1L	chr14	81952016	-	ANGEL1	chr14	77275986	-
5CDS-5UTR	ENST00000336735	ENST00000554941		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SEL1L	chr14	81952016	-	ANGEL1	chr14	77275986	-
intron-3CDS	ENST00000555824	ENST00000251089		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SEL1L	chr14	81952016	-	ANGEL1	chr14	77275986	-
intron-intron	ENST00000555824	ENST00000557179		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SEL1L	chr14	81952016	-	ANGEL1	chr14	77275986	-
intron-5UTR	ENST00000555824	ENST00000554941		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	SEL1L	chr14	81952016	-	ANGEL1	chr14	77275986	-
5CDS-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A632-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
Frame-shit	ENST00000192788	ENST00000379834		TCGA	RV	PRAD	TCGA-CH-5740-01A	UHRF1BP1	chr6	34825694	+	RIOK1	chr6	7417564	+
Frame-shit	ENST00000452449	ENST00000379834		TCGA	RV	PRAD	TCGA-CH-5740-01A	UHRF1BP1	chr6	34825694	+	RIOK1	chr6	7417564	+
intron-3CDS	ENST00000381602	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000397962	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000309776	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000509513	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000397959	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000381591	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
5UTR-3CDS	ENST00000403354	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
5UTR-3CDS	ENST00000381607	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
5UTR-3CDS	ENST00000402736	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000602682	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000381604	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000381584	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000558098	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000545619	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000535374	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3CDS	ENST00000473115	ENST00000375500		TCGA	RV	PRAD	TCGA-HC-7818-01A	ZMYND11	chr10	181499	+	LYZL1	chr10	29599039	+
intron-3UTR	ENST00000489495	ENST00000487931		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
intron-3UTR	ENST00000489495	ENST00000370763		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5CDS-3UTR	ENST00000370768	ENST00000487931		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5CDS-3UTR	ENST00000370768	ENST00000370763		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5CDS-3UTR	ENST00000370767	ENST00000487931		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5CDS-3UTR	ENST00000370767	ENST00000370763		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5CDS-3UTR	ENST00000436586	ENST00000487931		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5CDS-3UTR	ENST00000436586	ENST00000370763		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	FUBP1	chr1	78444569	-	DNAJB4	chr1	78478735	+
5UTR-intron	ENST00000468410	ENST00000419735		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000468410	ENST00000477775		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000468410	ENST00000318724		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000468410	ENST00000478915		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000468410	ENST00000388807		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000468410	ENST00000472910		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000222574	ENST00000419735		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000222574	ENST00000477775		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000222574	ENST00000318724		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000222574	ENST00000478915		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000222574	ENST00000388807		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
5UTR-intron	ENST00000222574	ENST00000472910		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000485846	ENST00000419735		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000485846	ENST00000477775		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000485846	ENST00000318724		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000485846	ENST00000478915		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000485846	ENST00000388807		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000485846	ENST00000472910		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000461963	ENST00000419735		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000461963	ENST00000477775		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000461963	ENST00000318724		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000461963	ENST00000478915		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000461963	ENST00000388807		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-intron	ENST00000461963	ENST00000472910		TCGA	RV	PRAD	TCGA-H9-7775-01A	HBP1	chr7	106809472	+	ATXN7L1	chr7	105401909	-
intron-3CDS	ENST00000331483	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000331483	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000331483	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000331483	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000331483	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000576390	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000576390	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000576390	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000576390	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000576390	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000439918	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000439918	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000439918	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000439918	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000439918	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000472244	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000472244	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000472244	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000472244	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000472244	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7782-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
5CDS-5UTR	ENST00000356607	ENST00000406590		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-5UTR	ENST00000356607	ENST00000570646		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-5UTR	ENST00000356607	ENST00000458134		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-5UTR	ENST00000356607	ENST00000219700		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-intron	ENST00000356607	ENST00000575120		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-intron	ENST00000356607	ENST00000574594		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-5UTR	ENST00000356607	ENST00000398595		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
5CDS-5UTR	ENST00000356607	ENST00000414777		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000538836	ENST00000406590		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000538836	ENST00000570646		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000538836	ENST00000458134		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000538836	ENST00000219700		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-intron	ENST00000538836	ENST00000575120		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-intron	ENST00000538836	ENST00000574594		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000538836	ENST00000398595		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000538836	ENST00000414777		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000492696	ENST00000406590		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000492696	ENST00000570646		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000492696	ENST00000458134		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000492696	ENST00000219700		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-intron	ENST00000492696	ENST00000575120		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-intron	ENST00000492696	ENST00000574594		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000492696	ENST00000398595		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
intron-5UTR	ENST00000492696	ENST00000414777		TCGA	RV	PRAD	TCGA-CH-5768-01A	PEX14	chr1	10596354	+	HMOX2	chr16	4555485	+
In-frame	ENST00000444215	ENST00000598810		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000444215	ENST00000593945		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000444215	ENST00000601519		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000444215	ENST00000311227		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000444215	ENST00000377214		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000444215	ENST00000539846		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
5CDS-5UTR	ENST00000444215	ENST00000598397		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000421545	ENST00000598810		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000421545	ENST00000593945		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000421545	ENST00000601519		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000421545	ENST00000311227		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000421545	ENST00000377214		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000421545	ENST00000539846		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
5CDS-5UTR	ENST00000421545	ENST00000598397		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	TDRD12	chr19	33268135	+	TEAD2	chr19	49854622	-
In-frame	ENST00000335209	ENST00000262097		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
In-frame	ENST00000335209	ENST00000381733		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000335209	ENST00000417108		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000335209	ENST00000520781		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000335209	ENST00000314146		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000335209	ENST00000520051		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
In-frame	ENST00000541210	ENST00000262097		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
In-frame	ENST00000541210	ENST00000381733		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000541210	ENST00000417108		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000541210	ENST00000520781		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000541210	ENST00000314146		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000541210	ENST00000520051		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
In-frame	ENST00000392545	ENST00000262097		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
In-frame	ENST00000392545	ENST00000381733		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000392545	ENST00000417108		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000392545	ENST00000520781		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000392545	ENST00000314146		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
5CDS-5UTR	ENST00000392545	ENST00000520051		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000535198	ENST00000262097		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
intron-3CDS	ENST00000535198	ENST00000381733		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000535198	ENST00000417108		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000535198	ENST00000520781		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000535198	ENST00000314146		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
intron-5UTR	ENST00000535198	ENST00000520051		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	TESC	chr12	117537030	-	ASAH1	chr8	17933096	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6354-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000392738	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
Frame-shit	ENST00000500704	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
Frame-shit	ENST00000327681	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
intron-3CDS	ENST00000539675	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
Frame-shit	ENST00000369233	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
Frame-shit	ENST00000329966	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
Frame-shit	ENST00000472914	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
5UTR-3CDS	ENST00000369232	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
Frame-shit	ENST00000369231	ENST00000379834		TCGA	RV	PRAD	TCGA-G9-6351-01A	USP45	chr6	99956486	-	RIOK1	chr6	7417564	+
5UTR-3CDS	ENST00000322366	ENST00000313899		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000322366	ENST00000353341		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000322366	ENST00000543098		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000322366	ENST00000352301		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-5UTR	ENST00000322366	ENST00000508119		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-5UTR	ENST00000322366	ENST00000541060		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000295888	ENST00000313899		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000295888	ENST00000353341		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000295888	ENST00000543098		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-3CDS	ENST00000295888	ENST00000352301		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-5UTR	ENST00000295888	ENST00000508119		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
5UTR-5UTR	ENST00000295888	ENST00000541060		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
intron-3CDS	ENST00000512267	ENST00000313899		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
intron-3CDS	ENST00000512267	ENST00000353341		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
intron-3CDS	ENST00000512267	ENST00000543098		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
intron-3CDS	ENST00000512267	ENST00000352301		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
intron-5UTR	ENST00000512267	ENST00000508119		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
intron-5UTR	ENST00000512267	ENST00000541060		TCGA	RV	PRAD	TCGA-J4-A67M-01A	WDFY3	chr4	85818064	-	HNRNPD	chr4	83276554	-
In-frame	ENST00000392133	ENST00000233710		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	XRCC5	chr2	217059709	+	ACADL	chr2	211060062	-
In-frame	ENST00000392132	ENST00000233710		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	XRCC5	chr2	217059709	+	ACADL	chr2	211060062	-
intron-3CDS	ENST00000471649	ENST00000233710		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	XRCC5	chr2	217059709	+	ACADL	chr2	211060062	-
5UTR-3CDS	ENST00000330817	ENST00000301019		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	ALG12	chr22	50311911	-	CDT1	chr16	88873459	+
In-frame	ENST00000273130	ENST00000325844		TCGA	RV	PRAD	TCGA-G9-6354-01A	DYNC1LI1	chr3	32582529	-	MRPS11	chr15	89020220	+
5CDS-3UTR	ENST00000273130	ENST00000557974		TCGA	RV	PRAD	TCGA-G9-6354-01A	DYNC1LI1	chr3	32582529	-	MRPS11	chr15	89020220	+
5CDS-3UTR	ENST00000273130	ENST00000353598		TCGA	RV	PRAD	TCGA-G9-6354-01A	DYNC1LI1	chr3	32582529	-	MRPS11	chr15	89020220	+
In-frame	ENST00000432458	ENST00000325844		TCGA	RV	PRAD	TCGA-G9-6354-01A	DYNC1LI1	chr3	32582529	-	MRPS11	chr15	89020220	+
5CDS-3UTR	ENST00000432458	ENST00000557974		TCGA	RV	PRAD	TCGA-G9-6354-01A	DYNC1LI1	chr3	32582529	-	MRPS11	chr15	89020220	+
5CDS-3UTR	ENST00000432458	ENST00000353598		TCGA	RV	PRAD	TCGA-G9-6354-01A	DYNC1LI1	chr3	32582529	-	MRPS11	chr15	89020220	+
intron-3CDS	ENST00000398907	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000398907	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000398905	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000398905	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000288319	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000288319	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
5UTR-3CDS	ENST00000398897	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
5UTR-3CDS	ENST00000398897	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000398911	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000398911	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000398910	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000398910	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000417133	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000417133	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000442448	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000442448	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000453032	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000453032	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000398919	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
Frame-shit	ENST00000398919	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000429727	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
intron-3CDS	ENST00000429727	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
5UTR-3CDS	ENST00000485493	ENST00000609713		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
5UTR-3CDS	ENST00000485493	ENST00000288309		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ERG	chr21	39947586	-	KCNJ6	chr21	38997786	-
5CDS-intron	ENST00000460934	ENST00000371754		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000460934	ENST00000469991		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000460934	ENST00000371752		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000460934	ENST00000396105		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000367145	ENST00000371754		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000367145	ENST00000469991		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000367145	ENST00000371752		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000367145	ENST00000396105		TCGA	RV	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205626979	-	ZNFX1	chr20	47863418	-
Frame-shit	ENST00000376771	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TBC1D25	chrX	48403411	+	HSPA9	chr5	137897478	-
5CDS-intron	ENST00000376771	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TBC1D25	chrX	48403411	+	HSPA9	chr5	137897478	-
5UTR-3CDS	ENST00000537536	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TBC1D25	chrX	48403411	+	HSPA9	chr5	137897478	-
5UTR-intron	ENST00000537536	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TBC1D25	chrX	48403411	+	HSPA9	chr5	137897478	-
intron-3CDS	ENST00000476141	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TBC1D25	chrX	48403411	+	HSPA9	chr5	137897478	-
intron-intron	ENST00000476141	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TBC1D25	chrX	48403411	+	HSPA9	chr5	137897478	-
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5789-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000400485		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
5CDS-intron	ENST00000332149	ENST00000487909		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
In-frame	ENST00000398585	ENST00000400485		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
5CDS-intron	ENST00000398585	ENST00000487909		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
Frame-shit	ENST00000458356	ENST00000400485		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
5CDS-intron	ENST00000458356	ENST00000487909		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
5UTR-3CDS	ENST00000497881	ENST00000400485		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
5UTR-intron	ENST00000497881	ENST00000487909		TCGA	RV	PRAD	TCGA-CH-5762-01A	TMPRSS2	chr21	42870046	-	MORC3	chr21	37705944	+
In-frame	ENST00000332149	ENST00000392314		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
In-frame	ENST00000332149	ENST00000272771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
Frame-shit	ENST00000332149	ENST00000487771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
5CDS-intron	ENST00000332149	ENST00000409056		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
In-frame	ENST00000398585	ENST00000392314		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
In-frame	ENST00000398585	ENST00000272771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
Frame-shit	ENST00000398585	ENST00000487771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
5CDS-intron	ENST00000398585	ENST00000409056		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
Frame-shit	ENST00000458356	ENST00000392314		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
Frame-shit	ENST00000458356	ENST00000272771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
Frame-shit	ENST00000458356	ENST00000487771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
5CDS-intron	ENST00000458356	ENST00000409056		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
intron-3CDS	ENST00000497881	ENST00000392314		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
intron-3CDS	ENST00000497881	ENST00000272771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
intron-3CDS	ENST00000497881	ENST00000487771		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
intron-intron	ENST00000497881	ENST00000409056		TCGA	RV	PRAD	TCGA-KK-A59Y-01A	TMPRSS2	chr21	42852403	-	TMEFF2	chr2	192863934	-
In-frame	ENST00000420470	ENST00000308683		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ARHGEF38	chr4	106474118	+	ZNF622	chr5	16463851	-
intron-3CDS	ENST00000508036	ENST00000308683		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ARHGEF38	chr4	106474118	+	ZNF622	chr5	16463851	-
In-frame	ENST00000265154	ENST00000308683		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ARHGEF38	chr4	106474118	+	ZNF622	chr5	16463851	-
Frame-shit	ENST00000199389	ENST00000178640		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000199389	ENST00000560591		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000199389	ENST00000395476		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000199389	ENST00000354498		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000199389	ENST00000340972		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
In-frame	ENST00000536084	ENST00000178640		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000536084	ENST00000560591		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000536084	ENST00000395476		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000536084	ENST00000354498		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
5CDS-intron	ENST00000536084	ENST00000340972		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
intron-3CDS	ENST00000495565	ENST00000178640		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
intron-intron	ENST00000495565	ENST00000560591		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
intron-intron	ENST00000495565	ENST00000395476		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
intron-intron	ENST00000495565	ENST00000354498		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
intron-intron	ENST00000495565	ENST00000340972		TCGA	RV	PRAD	TCGA-V1-A8WV-01A	EIF2AK1	chr7	6077055	-	MAP2K5	chr15	68098984	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000266712	ENST00000548058		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMTC3	chr12	88536264	+	ACSS3	chr12	81647086	+
5UTR-3CDS	ENST00000266712	ENST00000261206		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMTC3	chr12	88536264	+	ACSS3	chr12	81647086	+
5UTR-3CDS	ENST00000266712	ENST00000548324		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMTC3	chr12	88536264	+	ACSS3	chr12	81647086	+
5UTR-3CDS	ENST00000248211	ENST00000366933		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
5UTR-3UTR	ENST00000248211	ENST00000471021		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
3UTR-3CDS	ENST00000540927	ENST00000366933		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
3UTR-3UTR	ENST00000540927	ENST00000471021		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
5UTR-3CDS	ENST00000426665	ENST00000366933		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
5UTR-3UTR	ENST00000426665	ENST00000471021		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
intron-3CDS	ENST00000402932	ENST00000366933		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
intron-3UTR	ENST00000402932	ENST00000471021		TCGA	RV	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707340	+	SPATA17	chr1	218036116	+
intron-3CDS	ENST00000369331	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000369331	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000369331	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000369331	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000369331	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000369331	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000369331	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000369331	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000369331	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3UTR	ENST00000369331	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369321	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369321	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369321	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369321	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369321	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369321	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369321	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369321	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369321	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3UTR	ENST00000369321	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000345633	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000345633	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000345633	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000345633	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000345633	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000345633	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000345633	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000345633	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000345633	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3UTR	ENST00000345633	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369318	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369318	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369318	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369318	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369318	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369318	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369318	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369318	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369318	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3UTR	ENST00000369318	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369315	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369315	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3CDS	ENST00000369315	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369315	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369315	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369315	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369315	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369315	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-intron	ENST00000369315	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
5UTR-3UTR	ENST00000369315	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000452490	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000452490	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000452490	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000452490	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000452490	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000452490	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000452490	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000452490	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000452490	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3UTR	ENST00000452490	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000468790	ENST00000368615		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000468790	ENST00000392638		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3CDS	ENST00000468790	ENST00000344079		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000468790	ENST00000356571		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000468790	ENST00000368614		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000468790	ENST00000368613		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000468790	ENST00000368612		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000468790	ENST00000368610		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-intron	ENST00000468790	ENST00000432555		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
intron-3UTR	ENST00000468790	ENST00000475747		TCGA	RV	PRAD	TCGA-TP-A8TT-01A	CASP7	chr10	115439737	+	LRRC27	chr10	134165111	+
In-frame	ENST00000338034	ENST00000261643		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
In-frame	ENST00000338034	ENST00000536205		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-5UTR	ENST00000338034	ENST00000537334		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-intron	ENST00000338034	ENST00000429152		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
In-frame	ENST00000395962	ENST00000261643		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
In-frame	ENST00000395962	ENST00000536205		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-5UTR	ENST00000395962	ENST00000537334		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-intron	ENST00000395962	ENST00000429152		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
In-frame	ENST00000426905	ENST00000261643		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
In-frame	ENST00000426905	ENST00000536205		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-5UTR	ENST00000426905	ENST00000537334		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-intron	ENST00000426905	ENST00000429152		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5UTR-3CDS	ENST00000609345	ENST00000261643		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5UTR-3CDS	ENST00000609345	ENST00000536205		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5UTR-5UTR	ENST00000609345	ENST00000537334		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5UTR-intron	ENST00000609345	ENST00000429152		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
Frame-shit	ENST00000578071	ENST00000261643		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
Frame-shit	ENST00000578071	ENST00000536205		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-5UTR	ENST00000578071	ENST00000537334		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
5CDS-intron	ENST00000578071	ENST00000429152		TCGA	RV	PRAD	TCGA-HC-7213-01A	ELAC2	chr17	12919085	-	COX10	chr17	14063194	+
In-frame	ENST00000455140	ENST00000443236		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000455140	ENST00000597335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000455140	ENST00000388925		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
In-frame	ENST00000248070	ENST00000443236		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000248070	ENST00000597335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000248070	ENST00000388925		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
In-frame	ENST00000535753	ENST00000443236		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000535753	ENST00000597335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000535753	ENST00000388925		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
In-frame	ENST00000594975	ENST00000443236		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000594975	ENST00000597335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000594975	ENST00000388925		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
intron-3CDS	ENST00000602009	ENST00000443236		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
intron-intron	ENST00000602009	ENST00000597335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
intron-intron	ENST00000602009	ENST00000388925		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
In-frame	ENST00000597937	ENST00000443236		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000597937	ENST00000597335		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
5CDS-intron	ENST00000597937	ENST00000388925		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	EPS15L1	chr19	16582724	-	CPAMD8	chr19	17049256	-
Frame-shit	ENST00000347136	ENST00000435213		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000347136	ENST00000314904		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000347136	ENST00000373387		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000347136	ENST00000496711		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
Frame-shit	ENST00000372406	ENST00000435213		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000372406	ENST00000314904		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000372406	ENST00000373387		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000372406	ENST00000496711		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
Frame-shit	ENST00000372410	ENST00000435213		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000372410	ENST00000314904		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000372410	ENST00000373387		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
5CDS-3UTR	ENST00000372410	ENST00000496711		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
intron-3CDS	ENST00000415344	ENST00000435213		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
intron-3UTR	ENST00000415344	ENST00000314904		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
intron-3UTR	ENST00000415344	ENST00000373387		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
intron-3UTR	ENST00000415344	ENST00000496711		TCGA	RV	PRAD	TCGA-J9-A8CL-01A	GPR107	chr9	132861811	+	GARNL3	chr9	130155362	+
intron-intron	ENST00000391976	ENST00000300134		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391976	ENST00000538913		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391976	ENST00000543873		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391976	ENST00000556155		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391976	ENST00000537215		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391976	ENST00000454075		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000310931	ENST00000300134		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000310931	ENST00000538913		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000310931	ENST00000543873		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000310931	ENST00000556155		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000310931	ENST00000537215		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000310931	ENST00000454075		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391975	ENST00000300134		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391975	ENST00000538913		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391975	ENST00000543873		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391975	ENST00000556155		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391975	ENST00000537215		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000391975	ENST00000454075		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000427183	ENST00000300134		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000427183	ENST00000538913		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000427183	ENST00000543873		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000427183	ENST00000556155		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000427183	ENST00000537215		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000427183	ENST00000454075		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000476807	ENST00000300134		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000476807	ENST00000538913		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000476807	ENST00000543873		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000476807	ENST00000556155		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000476807	ENST00000537215		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
intron-intron	ENST00000476807	ENST00000454075		TCGA	RV	PRAD	TCGA-YL-A8SB-01A	HDLBP	chr2	242168639	-	STAT6	chr12	57496773	-
5CDS-5UTR	ENST00000404771	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404771	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404771	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404771	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000404771	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372440	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372440	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372440	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372440	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000372440	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372443	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372443	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372443	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000372443	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000372443	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286628	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286628	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286628	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286628	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000286628	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286627	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286627	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286627	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000286627	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000286627	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000354353	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000354353	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000354353	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000354353	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000354353	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404857	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404857	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404857	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000404857	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000404857	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000406533	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000406533	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000406533	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000406533	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000406533	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
intron-5UTR	ENST00000484507	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
intron-5UTR	ENST00000484507	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
intron-5UTR	ENST00000484507	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
intron-5UTR	ENST00000484507	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
intron-intron	ENST00000484507	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000481070	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000481070	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000481070	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000481070	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000481070	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000480683	ENST00000595437		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000480683	ENST00000376586		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000480683	ENST00000319562		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-5UTR	ENST00000480683	ENST00000376581		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
5CDS-intron	ENST00000480683	ENST00000593990		TCGA	RV	PRAD	TCGA-HC-7209-01A	KCNMA1	chr10	79397023	-	FARP1	chr13	98865474	+
Frame-shit	ENST00000253925	ENST00000534064		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
Frame-shit	ENST00000253925	ENST00000535943		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5CDS-intron	ENST00000253925	ENST00000525931		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5CDS-intron	ENST00000253925	ENST00000529807		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5CDS-intron	ENST00000253925	ENST00000527522		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
Frame-shit	ENST00000389547	ENST00000534064		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
Frame-shit	ENST00000389547	ENST00000535943		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5CDS-intron	ENST00000389547	ENST00000525931		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5CDS-intron	ENST00000389547	ENST00000529807		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5CDS-intron	ENST00000389547	ENST00000527522		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
intron-3CDS	ENST00000530548	ENST00000534064		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
intron-3CDS	ENST00000530548	ENST00000535943		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
intron-intron	ENST00000530548	ENST00000525931		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
intron-intron	ENST00000530548	ENST00000529807		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
intron-intron	ENST00000530548	ENST00000527522		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	PPFIA1	chr11	70201917	+	INTS4	chr11	77594998	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5765-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	PRAD	TCGA-HC-8261-01B	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
In-frame	ENST00000252456	ENST00000280326		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252456	ENST00000503026		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252456	ENST00000515390		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252456	ENST00000515676		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000252456	ENST00000506600		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000592923	ENST00000280326		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000592923	ENST00000503026		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000592923	ENST00000515390		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000592923	ENST00000515676		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000592923	ENST00000506600		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000535659	ENST00000280326		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535659	ENST00000503026		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535659	ENST00000515390		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535659	ENST00000515676		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000535659	ENST00000506600		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000588468	ENST00000280326		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000588468	ENST00000503026		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000588468	ENST00000515390		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000588468	ENST00000515676		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000588468	ENST00000506600		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000544952	ENST00000280326		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544952	ENST00000503026		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544952	ENST00000515390		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544952	ENST00000515676		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
intron-intron	ENST00000544952	ENST00000506600		TCGA	RV	PRAD	TCGA-EJ-5521-01A	CNN1	chr19	11661138	+	CCT5	chr5	10250033	+
In-frame	ENST00000256079	ENST00000544024		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
In-frame	ENST00000256079	ENST00000423955		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
In-frame	ENST00000256079	ENST00000293525		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
intron-3CDS	ENST00000544829	ENST00000544024		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
intron-3CDS	ENST00000544829	ENST00000423955		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
intron-3CDS	ENST00000544829	ENST00000293525		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
intron-3CDS	ENST00000538338	ENST00000544024		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
intron-3CDS	ENST00000538338	ENST00000423955		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
intron-3CDS	ENST00000538338	ENST00000293525		TCGA	RV	PRAD	TCGA-VP-A87D-01A	IPO8	chr12	30837235	-	KRT86	chr12	52702017	+
5CDS-intron	ENST00000288235	ENST00000277198		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000288235	ENST00000297979		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000288235	ENST00000375315		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000288235	ENST00000395357		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000288235	ENST00000425634		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000288235	ENST00000433691		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5CDS-intron	ENST00000288235	ENST00000473778		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000277198		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000297979		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000375315		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000395357		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000425634		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000433691		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
5UTR-intron	ENST00000558814	ENST00000473778		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	MYO1E	chr15	59548483	-	C9orf3	chr9	97822976	+
intron-5UTR	ENST00000340308	ENST00000396958		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000340308	ENST00000293981		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000340308	ENST00000572006		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-intron	ENST00000340308	ENST00000572786		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000447932	ENST00000396958		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000447932	ENST00000293981		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000447932	ENST00000572006		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-intron	ENST00000447932	ENST00000572786		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000326232	ENST00000396958		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000326232	ENST00000293981		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000326232	ENST00000572006		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
5CDS-intron	ENST00000326232	ENST00000572786		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000429996	ENST00000396958		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000429996	ENST00000293981		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000429996	ENST00000572006		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-intron	ENST00000429996	ENST00000572786		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000461089	ENST00000396958		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000461089	ENST00000293981		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-5UTR	ENST00000461089	ENST00000572006		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
intron-intron	ENST00000461089	ENST00000572786		TCGA	RV	PRAD	TCGA-EJ-A7NN-01A	SLC37A3	chr7	140043212	-	FLYWCH2	chr16	2945221	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
Frame-shit	ENST00000252826	ENST00000334186		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000252826	ENST00000602351		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000334186		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
Frame-shit	ENST00000427978	ENST00000602351		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000334186		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
intron-3CDS	ENST00000355712	ENST00000602351		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000334186		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
3UTR-3CDS	ENST00000601347	ENST00000602351		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	TRPM4	chr19	49675365	+	PPFIA3	chr19	49636258	+
5CDS-3UTR	ENST00000609104	ENST00000380094		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000609104	ENST00000380092		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
5CDS-intron	ENST00000609104	ENST00000191063		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-3UTR	ENST00000277575	ENST00000380094		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000277575	ENST00000380092		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000277575	ENST00000191063		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-3UTR	ENST00000379237	ENST00000380094		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000379237	ENST00000380092		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000379237	ENST00000191063		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-3UTR	ENST00000443016	ENST00000380094		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000443016	ENST00000380092		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000443016	ENST00000191063		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-3UTR	ENST00000609853	ENST00000380094		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000609853	ENST00000380092		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
intron-intron	ENST00000609853	ENST00000191063		TCGA	RV	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	ANKRD16	chr10	5904654	-
In-frame	ENST00000377967	ENST00000337414		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000377967	ENST00000380718		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000377967	ENST00000380732		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000377967	ENST00000534860		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000377967	ENST00000380736		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000377967	ENST00000303025		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000377967	ENST00000413512		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000377967	ENST00000491514		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000382899	ENST00000337414		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000382899	ENST00000380718		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000382899	ENST00000380732		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000382899	ENST00000534860		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000382899	ENST00000380736		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000382899	ENST00000303025		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000382899	ENST00000413512		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000382899	ENST00000491514		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000536777	ENST00000337414		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000536777	ENST00000380718		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000536777	ENST00000380732		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000536777	ENST00000534860		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000536777	ENST00000380736		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000536777	ENST00000303025		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000536777	ENST00000413512		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000536777	ENST00000491514		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000543216	ENST00000337414		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000543216	ENST00000380718		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000543216	ENST00000380732		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000543216	ENST00000534860		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000543216	ENST00000380736		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000543216	ENST00000303025		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000543216	ENST00000413512		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000543216	ENST00000491514		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479423	ENST00000337414		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479423	ENST00000380718		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479423	ENST00000380732		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-3CDS	ENST00000479423	ENST00000534860		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479423	ENST00000380736		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479423	ENST00000303025		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000479423	ENST00000413512		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
intron-intron	ENST00000479423	ENST00000491514		TCGA	RV	PRAD	TCGA-EJ-8469-01A	KDM6A	chrX	44918711	+	ARHGAP6	chrX	11272827	-
Frame-shit	ENST00000452135	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000452135	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000452135	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000452135	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000452135	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000452135	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000452135	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000452135	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000393360	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000393360	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000455781	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000455781	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000343111	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000343111	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000347470	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000347470	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000397072	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-5UTR	ENST00000397072	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
Frame-shit	ENST00000425491	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000425491	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
In-frame	ENST00000539014	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
5CDS-5UTR	ENST00000539014	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000399322		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000258767		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000403951		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000402815		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000407950		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000444700		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-3CDS	ENST00000524170	ENST00000406247		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
intron-5UTR	ENST00000524170	ENST00000403963		TCGA	RV	PRAD	TCGA-EJ-7789-01A	MAPK9	chr5	179691781	-	DGKB	chr7	14661119	-
3UTR-3CDS	ENST00000533507	ENST00000354619		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
3UTR-intron	ENST00000533507	ENST00000327333		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
Frame-shit	ENST00000263774	ENST00000354619		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
5CDS-intron	ENST00000263774	ENST00000327333		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-3CDS	ENST00000529276	ENST00000354619		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-intron	ENST00000529276	ENST00000327333		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-3CDS	ENST00000528192	ENST00000354619		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-intron	ENST00000528192	ENST00000327333		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-3CDS	ENST00000534208	ENST00000354619		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-intron	ENST00000534208	ENST00000327333		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-3CDS	ENST00000534716	ENST00000354619		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
intron-intron	ENST00000534716	ENST00000327333		TCGA	RV	PRAD	TCGA-EJ-5527-01A	NDUFS3	chr11	47604020	+	ERO1LB	chr1	236381876	-
5CDS-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
In-frame	ENST00000322349	ENST00000380680		TCGA	RV	PRAD	TCGA-EJ-5516-01A	EEA1	chr12	93181643	-	UBL3	chr13	30351400	-
intron-3CDS	ENST00000547833	ENST00000380680		TCGA	RV	PRAD	TCGA-EJ-5516-01A	EEA1	chr12	93181643	-	UBL3	chr13	30351400	-
Frame-shit	ENST00000381340	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	ITPR2	chr12	26703180	-	CLEC2A	chr12	10074831	-
Frame-shit	ENST00000381340	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	ITPR2	chr12	26703180	-	CLEC2A	chr12	10074831	-
intron-3CDS	ENST00000545902	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	ITPR2	chr12	26703180	-	CLEC2A	chr12	10074831	-
intron-3CDS	ENST00000545902	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	ITPR2	chr12	26703180	-	CLEC2A	chr12	10074831	-
intron-3CDS	ENST00000242737	ENST00000339766		TCGA	RV	PRAD	TCGA-EJ-7788-01A	ITPR2	chr12	26703180	-	CLEC2A	chr12	10074831	-
intron-3CDS	ENST00000242737	ENST00000455827		TCGA	RV	PRAD	TCGA-EJ-7788-01A	ITPR2	chr12	26703180	-	CLEC2A	chr12	10074831	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000360184	ENST00000402714		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
Frame-shit	ENST00000360184	ENST00000544450		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
Frame-shit	ENST00000360184	ENST00000392920		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
5CDS-3UTR	ENST00000360184	ENST00000555048		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
intron-3CDS	ENST00000556791	ENST00000402714		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
intron-3CDS	ENST00000556791	ENST00000544450		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
intron-3CDS	ENST00000556791	ENST00000392920		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
intron-3UTR	ENST00000556791	ENST00000555048		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	DYNC1H1	chr14	102478807	+	EVL	chr14	100551024	+
5CDS-intron	ENST00000325321	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000325321	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000391810	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000358049	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000597509	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-7793-01A	KLK2	chr19	51383822	+	NDUFV1	chr11	67375697	+
Frame-shit	ENST00000231368	ENST00000321521		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
In-frame	ENST00000231368	ENST00000358359		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
5CDS-3UTR	ENST00000231368	ENST00000513500		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
5CDS-3UTR	ENST00000231368	ENST00000414217		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
Frame-shit	ENST00000395770	ENST00000321521		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
In-frame	ENST00000395770	ENST00000358359		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
5CDS-3UTR	ENST00000395770	ENST00000513500		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
5CDS-3UTR	ENST00000395770	ENST00000414217		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
intron-3CDS	ENST00000395784	ENST00000321521		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
intron-3CDS	ENST00000395784	ENST00000358359		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
intron-3UTR	ENST00000395784	ENST00000513500		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
intron-3UTR	ENST00000395784	ENST00000414217		TCGA	RV	PRAD	TCGA-XK-AAJ3-01A	LNPEP	chr5	96322374	+	PPIP5K2	chr5	102537223	+
intron-5UTR	ENST00000338854	ENST00000264657		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000338854	ENST00000585517		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000338854	ENST00000389272		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000338854	ENST00000588969		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000338854	ENST00000404395		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000338854	ENST00000590776		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-5UTR	ENST00000395757	ENST00000264657		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000395757	ENST00000585517		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000395757	ENST00000389272		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000395757	ENST00000588969		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000395757	ENST00000404395		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000395757	ENST00000590776		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5CDS-5UTR	ENST00000355815	ENST00000264657		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5CDS-intron	ENST00000355815	ENST00000585517		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5CDS-intron	ENST00000355815	ENST00000389272		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5CDS-intron	ENST00000355815	ENST00000588969		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5CDS-intron	ENST00000355815	ENST00000404395		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5CDS-intron	ENST00000355815	ENST00000590776		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-5UTR	ENST00000261646	ENST00000264657		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000261646	ENST00000585517		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000261646	ENST00000389272		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000261646	ENST00000588969		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000261646	ENST00000404395		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000261646	ENST00000590776		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-5UTR	ENST00000435530	ENST00000264657		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000435530	ENST00000585517		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000435530	ENST00000389272		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000435530	ENST00000588969		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000435530	ENST00000404395		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
intron-intron	ENST00000435530	ENST00000590776		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-5UTR	ENST00000583732	ENST00000264657		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000583732	ENST00000585517		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000583732	ENST00000389272		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000583732	ENST00000588969		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000583732	ENST00000404395		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000583732	ENST00000590776		TCGA	RV	PRAD	TCGA-VP-A87C-01A	SREBF1	chr17	17726832	-	STAT3	chr17	40500557	-
5UTR-3CDS	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-M7-A725-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
Frame-shit	ENST00000392975	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392975	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392975	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392975	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392975	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392975	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000360793	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000360793	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000360793	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000360793	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000360793	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000360793	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000584031	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000584031	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000584031	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000584031	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000584031	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000584031	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
In-frame	ENST00000392976	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392976	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392976	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392976	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392976	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000392976	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000582297	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582297	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582297	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582297	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582297	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582297	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000581573	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581573	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581573	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581573	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581573	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581573	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000448884	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000448884	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000448884	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000448884	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000448884	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000448884	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000582034	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582034	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582034	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582034	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582034	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582034	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000542042	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000542042	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000542042	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000542042	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000542042	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000542042	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000581163	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581163	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581163	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581163	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581163	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581163	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000582997	ENST00000376929		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582997	ENST00000506690		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582997	ENST00000389805		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582997	ENST00000402874		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582997	ENST00000510187		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000582997	ENST00000360718		TCGA	RV	PRAD	TCGA-G9-6353-01A	CYB561	chr17	61509668	-	SQSTM1	chr5	179250858	+
5CDS-5UTR	ENST00000323851	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000323851	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000323851	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000354944	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000354944	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000354944	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000521414	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000521414	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000521414	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5UTR-5UTR	ENST00000537882	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5UTR-5UTR	ENST00000537882	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5UTR-5UTR	ENST00000537882	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000414097	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000414097	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000414097	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000518176	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000518176	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000518176	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000522476	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000522476	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000522476	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000518066	ENST00000300875		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000518066	ENST00000391916		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
intron-5UTR	ENST00000518066	ENST00000410105		TCGA	RV	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292475	-	DACT3	chr19	47156332	-
In-frame	ENST00000519301	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000519301	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000519301	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000520407	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000520407	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000520407	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000523079	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000523079	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000523079	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000338921	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000338921	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000338921	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000356819	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000356819	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000356819	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000287845	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000287845	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000287845	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000341377	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000341377	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000341377	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000287842	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000287842	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000287842	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000521670	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000521670	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000521670	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000405005	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000405005	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
5CDS-5UTR	ENST00000405005	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000520502	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000520502	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-5UTR	ENST00000520502	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000539990	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000539990	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-5UTR	ENST00000539990	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000523681	ENST00000220876		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-3CDS	ENST00000523681	ENST00000518111		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
intron-5UTR	ENST00000523681	ENST00000518491		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NRG1	chr8	32463201	+	STMN2	chr8	80549037	+
In-frame	ENST00000371953	ENST00000426197		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PTEN	chr10	89653866	+	C1orf226	chr1	162352972	+
In-frame	ENST00000371953	ENST00000458626		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PTEN	chr10	89653866	+	C1orf226	chr1	162352972	+
intron-3CDS	ENST00000472832	ENST00000426197		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PTEN	chr10	89653866	+	C1orf226	chr1	162352972	+
intron-3CDS	ENST00000472832	ENST00000458626		TCGA	RV	PRAD	TCGA-VP-A87J-01A	PTEN	chr10	89653866	+	C1orf226	chr1	162352972	+
intron-3CDS	ENST00000374140	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374140	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374140	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374140	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000350696	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000350696	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000350696	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000350696	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
Frame-shit	ENST00000317613	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
5CDS-intron	ENST00000317613	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
5CDS-intron	ENST00000317613	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
5CDS-intron	ENST00000317613	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000343817	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000343817	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000343817	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000343817	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000394646	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000394646	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000394646	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000394646	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000374136	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374136	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374136	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374136	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000462143	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000462143	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000462143	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000462143	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000463806	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000463806	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000463806	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000463806	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000342620	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000342620	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000342620	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000342620	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000374134	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374134	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374134	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000374134	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-3CDS	ENST00000462403	ENST00000374736		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000462403	ENST00000494467		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000462403	ENST00000423487		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
intron-intron	ENST00000462403	ENST00000374733		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RGS3	chr9	116226161	+	ABCA1	chr9	107602800	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000367545	ENST00000303319		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
5CDS-5UTR	ENST00000367545	ENST00000428879		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
5CDS-5UTR	ENST00000367545	ENST00000422782		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
5CDS-5UTR	ENST00000367545	ENST00000460311		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000367526	ENST00000303319		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000367526	ENST00000428879		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000367526	ENST00000422782		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000367526	ENST00000460311		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000480333	ENST00000303319		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000480333	ENST00000428879		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000480333	ENST00000422782		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
intron-5UTR	ENST00000480333	ENST00000460311		TCGA	RV	PRAD	TCGA-HC-7232-01A	UTRN	chr6	144844324	+	MMADHC	chr2	150443663	-
5UTR-3CDS	ENST00000588723	ENST00000378825		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
5UTR-5UTR	ENST00000588723	ENST00000378839		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
Frame-shit	ENST00000356958	ENST00000378825		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
5CDS-5UTR	ENST00000356958	ENST00000378839		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
In-frame	ENST00000292841	ENST00000378825		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
5CDS-5UTR	ENST00000292841	ENST00000378839		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
Frame-shit	ENST00000392157	ENST00000378825		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
5CDS-5UTR	ENST00000392157	ENST00000378839		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
In-frame	ENST00000355533	ENST00000378825		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
5CDS-5UTR	ENST00000355533	ENST00000378839		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
intron-3CDS	ENST00000588354	ENST00000378825		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
intron-5UTR	ENST00000588354	ENST00000378839		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	ZNF585A	chr19	37646767	-	CCDC3	chr10	13040512	-
5CDS-intron	ENST00000377735	ENST00000535193		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000377735	ENST00000543771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000377735	ENST00000381306		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000377735	ENST00000381309		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000377735	ENST00000442236		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000377735	ENST00000489243		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000377735	ENST00000536108		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000377735	ENST00000428870		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000377735	ENST00000401787		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000535193		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000543771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000381306		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000381309		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000442236		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000489243		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000270223	ENST00000536108		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000270223	ENST00000428870		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000270223	ENST00000401787		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000535193		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000543771		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000381306		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000381309		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000442236		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000489243		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-3UTR	ENST00000601370	ENST00000536108		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-3UTR	ENST00000601370	ENST00000428870		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
5UTR-intron	ENST00000601370	ENST00000401787		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	DMWD	chr19	46294163	-	KDM4C	chr9	7128066	+
intron-intron	ENST00000231751	ENST00000313164		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
intron-intron	ENST00000231751	ENST00000494960		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
5CDS-intron	ENST00000426532	ENST00000313164		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
5CDS-intron	ENST00000426532	ENST00000494960		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
intron-intron	ENST00000417439	ENST00000313164		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
intron-intron	ENST00000417439	ENST00000494960		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
intron-intron	ENST00000493056	ENST00000313164		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
intron-intron	ENST00000493056	ENST00000494960		TCGA	RV	PRAD	TCGA-G9-6356-01A	LTF	chr3	46477510	-	C7	chr5	40954982	+
In-frame	ENST00000398022	ENST00000561648		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000398022	ENST00000563137		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000398022	ENST00000562871		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000398022	ENST00000262383		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000398022	ENST00000535559		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000398022	ENST00000567169		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000398022	ENST00000562520		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
In-frame	ENST00000217315	ENST00000561648		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000217315	ENST00000563137		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000217315	ENST00000562871		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000217315	ENST00000262383		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000217315	ENST00000535559		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-intron	ENST00000217315	ENST00000567169		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5CDS-5UTR	ENST00000217315	ENST00000562520		TCGA	RV	PRAD	TCGA-HC-A632-01A	TM9SF4	chr20	30723976	+	ZNF423	chr16	49823457	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000540746	ENST00000444215		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	LSM14A	chr19	34706566	+	TDRD12	chr19	33263659	+
In-frame	ENST00000540746	ENST00000421545		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	LSM14A	chr19	34706566	+	TDRD12	chr19	33263659	+
In-frame	ENST00000544216	ENST00000444215		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	LSM14A	chr19	34706566	+	TDRD12	chr19	33263659	+
In-frame	ENST00000544216	ENST00000421545		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	LSM14A	chr19	34706566	+	TDRD12	chr19	33263659	+
In-frame	ENST00000433627	ENST00000444215		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	LSM14A	chr19	34706566	+	TDRD12	chr19	33263659	+
In-frame	ENST00000433627	ENST00000421545		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	LSM14A	chr19	34706566	+	TDRD12	chr19	33263659	+
5UTR-3UTR	ENST00000319592	ENST00000343295		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000319592	ENST00000502986		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000319592	ENST00000389060		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000381793	ENST00000343295		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000381793	ENST00000502986		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000381793	ENST00000389060		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000381795	ENST00000343295		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000381795	ENST00000502986		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000381795	ENST00000389060		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000295971	ENST00000343295		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000295971	ENST00000502986		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000295971	ENST00000389060		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000514014	ENST00000343295		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000514014	ENST00000502986		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3UTR	ENST00000514014	ENST00000389060		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000515809	ENST00000343295		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000515809	ENST00000502986		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
intron-3UTR	ENST00000515809	ENST00000389060		TCGA	RV	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40546439	-	IDO2	chr8	39821127	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A67K-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8HJ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000520258	ENST00000487273		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000520258	ENST00000466936		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000520258	ENST00000481513		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
intron-intron	ENST00000520258	ENST00000484143		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
Frame-shit	ENST00000396987	ENST00000487273		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000396987	ENST00000466936		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000396987	ENST00000481513		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
5CDS-intron	ENST00000396987	ENST00000484143		TCGA	RV	PRAD	TCGA-EJ-5522-01A	AGPAT6	chr8	41456823	+	ADAM9	chr8	38899465	+
5CDS-3UTR	ENST00000339818	ENST00000400427		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000339818	ENST00000400424		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000339818	ENST00000408910		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000339818	ENST00000408989		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000339818	ENST00000400423		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
intron-3UTR	ENST00000496321	ENST00000400427		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
intron-3UTR	ENST00000496321	ENST00000400424		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
intron-3UTR	ENST00000496321	ENST00000408910		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
intron-3UTR	ENST00000496321	ENST00000408989		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
intron-3UTR	ENST00000496321	ENST00000400423		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000397956	ENST00000400427		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000397956	ENST00000400424		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000397956	ENST00000408910		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000397956	ENST00000408989		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000397956	ENST00000400423		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000325223	ENST00000400427		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000325223	ENST00000400424		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000325223	ENST00000408910		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000325223	ENST00000408989		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-3UTR	ENST00000325223	ENST00000400423		TCGA	RV	PRAD	TCGA-M7-A725-01A	C21orf2	chr21	45759001	-	UMODL1	chr21	43562206	+
5CDS-intron	ENST00000424459	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000424459	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000424459	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000424459	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5UTR-intron	ENST00000514387	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5UTR-intron	ENST00000514387	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5UTR-3UTR	ENST00000514387	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5UTR-3UTR	ENST00000514387	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000506184	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000506184	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000506184	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000506184	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000454432	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000454432	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000454432	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000454432	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000511209	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000511209	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000511209	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000511209	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000264779	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000264779	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000264779	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000264779	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000538707	ENST00000502509		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-intron	ENST00000538707	ENST00000264668		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000538707	ENST00000341013		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5CDS-3UTR	ENST00000538707	ENST00000440940		TCGA	RV	PRAD	TCGA-EJ-7327-01A	GPBP1	chr5	56527148	+	MTRR	chr5	7889208	+
5UTR-5UTR	ENST00000452400	ENST00000248929		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NCOA2	chr8	71315935	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000452400	ENST00000454798		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NCOA2	chr8	71315935	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000267974	ENST00000248929		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NCOA2	chr8	71315935	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000267974	ENST00000454798		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NCOA2	chr8	71315935	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000524223	ENST00000248929		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NCOA2	chr8	71315935	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000524223	ENST00000454798		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NCOA2	chr8	71315935	-	SGSM3	chr22	40796700	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-H9-A6BY-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000335512		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
In-frame	ENST00000332149	ENST00000539837		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000470987		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000291539		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398236		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398229		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398234		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398232		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398227		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398225		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000380328		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000328862		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000335440		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000398224		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000332149	ENST00000349112		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
In-frame	ENST00000398585	ENST00000335512		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
In-frame	ENST00000398585	ENST00000539837		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000470987		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000291539		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398236		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398229		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398234		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398232		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398227		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398225		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000380328		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000328862		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000335440		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000398224		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000398585	ENST00000349112		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000458356	ENST00000335512		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
Frame-shit	ENST00000458356	ENST00000539837		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000470987		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000291539		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398236		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398229		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398234		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398232		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398227		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398225		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000380328		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000328862		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000335440		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000398224		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-3UTR	ENST00000458356	ENST00000349112		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3CDS	ENST00000497881	ENST00000335512		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3CDS	ENST00000497881	ENST00000539837		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000470987		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000291539		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398236		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398229		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398234		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398232		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398227		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398225		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000380328		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000328862		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000335440		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000398224		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
intron-3UTR	ENST00000497881	ENST00000349112		TCGA	RV	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42866283	-	PDE9A	chr21	44163886	+
5CDS-intron	ENST00000268489	ENST00000446827		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000268489	ENST00000425432		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000268489	ENST00000313565		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000268489	ENST00000564134		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000268489	ENST00000565601		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-5UTR	ENST00000268489	ENST00000564943		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000397992	ENST00000446827		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000397992	ENST00000425432		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000397992	ENST00000313565		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000397992	ENST00000564134		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-intron	ENST00000397992	ENST00000565601		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
5CDS-5UTR	ENST00000397992	ENST00000564943		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
intron-intron	ENST00000558842	ENST00000446827		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
intron-intron	ENST00000558842	ENST00000425432		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
intron-intron	ENST00000558842	ENST00000313565		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
intron-intron	ENST00000558842	ENST00000564134		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
intron-intron	ENST00000558842	ENST00000565601		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
intron-5UTR	ENST00000558842	ENST00000564943		TCGA	RV	PRAD	TCGA-M7-A725-01A	ZFHX3	chr16	72923630	-	ZNF821	chr16	71901940	-
Frame-shit	ENST00000333229	ENST00000264111		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000333229	ENST00000397081		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000333229	ENST00000409036		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000333229	ENST00000397087		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000333229	ENST00000538974		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000333229	ENST00000540783		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000333229	ENST00000539331		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
5CDS-intron	ENST00000333229	ENST00000473043		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
5CDS-intron	ENST00000333229	ENST00000535187		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000264111		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000397081		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000409036		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000397087		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000538974		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000540783		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000342449	ENST00000539331		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
5CDS-intron	ENST00000342449	ENST00000473043		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
5CDS-intron	ENST00000342449	ENST00000535187		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000264111		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000397081		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000409036		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000397087		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000538974		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000540783		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000380800	ENST00000539331		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
5CDS-intron	ENST00000380800	ENST00000473043		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
5CDS-intron	ENST00000380800	ENST00000535187		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000264111		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000397081		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000409036		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000397087		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000538974		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000540783		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000341322	ENST00000539331		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-intron	ENST00000341322	ENST00000473043		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-intron	ENST00000341322	ENST00000535187		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000264111		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000397081		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000409036		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000397087		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000538974		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000540783		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-3CDS	ENST00000470108	ENST00000539331		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-intron	ENST00000470108	ENST00000473043		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
intron-intron	ENST00000470108	ENST00000535187		TCGA	RV	PRAD	TCGA-HC-7081-01A	BRWD1	chr21	40670358	-	RAPGEF4	chr2	173913328	+
Frame-shit	ENST00000253055	ENST00000293350		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
Frame-shit	ENST00000253055	ENST00000540132		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
Frame-shit	ENST00000253055	ENST00000455361		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
Frame-shit	ENST00000253055	ENST00000433981		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
5CDS-intron	ENST00000253055	ENST00000598015		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
3UTR-3CDS	ENST00000593906	ENST00000293350		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
3UTR-3CDS	ENST00000593906	ENST00000540132		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
3UTR-3CDS	ENST00000593906	ENST00000455361		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
3UTR-3CDS	ENST00000593906	ENST00000433981		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
3UTR-intron	ENST00000593906	ENST00000598015		TCGA	RV	PRAD	TCGA-ZG-A9LM-01A	MAP3K10	chr19	40698620	+	ALDH16A1	chr19	49971638	+
In-frame	ENST00000304987	ENST00000380420		TCGA	RV	PRAD	TCGA-G9-6361-01A	SIK2	chr11	111583099	+	PIR	chrX	15477863	-
In-frame	ENST00000304987	ENST00000380421		TCGA	RV	PRAD	TCGA-G9-6361-01A	SIK2	chr11	111583099	+	PIR	chrX	15477863	-
5CDS-5UTR	ENST00000304987	ENST00000476381		TCGA	RV	PRAD	TCGA-G9-6361-01A	SIK2	chr11	111583099	+	PIR	chrX	15477863	-
intron-3CDS	ENST00000533868	ENST00000380420		TCGA	RV	PRAD	TCGA-G9-6361-01A	SIK2	chr11	111583099	+	PIR	chrX	15477863	-
intron-3CDS	ENST00000533868	ENST00000380421		TCGA	RV	PRAD	TCGA-G9-6361-01A	SIK2	chr11	111583099	+	PIR	chrX	15477863	-
intron-5UTR	ENST00000533868	ENST00000476381		TCGA	RV	PRAD	TCGA-G9-6361-01A	SIK2	chr11	111583099	+	PIR	chrX	15477863	-
In-frame	ENST00000448662	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000448662	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
Frame-shit	ENST00000431808	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000431808	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
Frame-shit	ENST00000284776	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000284776	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
In-frame	ENST00000437304	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000437304	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
Frame-shit	ENST00000319471	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000319471	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
In-frame	ENST00000449407	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000449407	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
Frame-shit	ENST00000355634	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000355634	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
Frame-shit	ENST00000393528	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000393528	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
Frame-shit	ENST00000418609	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5CDS-3UTR	ENST00000418609	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5UTR-3CDS	ENST00000498125	ENST00000081029		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
5UTR-3UTR	ENST00000498125	ENST00000538315		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	SORBS2	chr4	186570621	-	MRPS35	chr12	27908114	+
In-frame	ENST00000433529	ENST00000260641		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000433529	ENST00000476840		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000433529	ENST00000542850		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000433529	ENST00000377982		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
In-frame	ENST00000415783	ENST00000260641		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000415783	ENST00000476840		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000415783	ENST00000542850		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000415783	ENST00000377982		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
In-frame	ENST00000282574	ENST00000260641		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000282574	ENST00000476840		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000282574	ENST00000542850		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000282574	ENST00000377982		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
In-frame	ENST00000445587	ENST00000260641		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000445587	ENST00000476840		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000445587	ENST00000542850		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000445587	ENST00000377982		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-3CDS	ENST00000482876	ENST00000260641		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000482876	ENST00000476840		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000482876	ENST00000542850		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000482876	ENST00000377982		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
In-frame	ENST00000416149	ENST00000260641		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000416149	ENST00000476840		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000416149	ENST00000542850		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5CDS-intron	ENST00000416149	ENST00000377982		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	TIA1	chr2	70463211	-	ACTR2	chr2	65478161	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7321-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000357001		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	GUCA2A	chr1	42629281	-
intron-3CDS	ENST00000398585	ENST00000357001		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	GUCA2A	chr1	42629281	-
intron-3CDS	ENST00000458356	ENST00000357001		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	GUCA2A	chr1	42629281	-
5UTR-3CDS	ENST00000497881	ENST00000357001		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	TMPRSS2	chr21	42880008	-	GUCA2A	chr1	42629281	-
Frame-shit	ENST00000373647	ENST00000374762		TCGA	RV	PRAD	TCGA-HC-7821-01A	RABGAP1	chr9	125761045	+	NIPSNAP3B	chr9	107535103	+
5CDS-3UTR	ENST00000373647	ENST00000461177		TCGA	RV	PRAD	TCGA-HC-7821-01A	RABGAP1	chr9	125761045	+	NIPSNAP3B	chr9	107535103	+
intron-3CDS	ENST00000493854	ENST00000374762		TCGA	RV	PRAD	TCGA-HC-7821-01A	RABGAP1	chr9	125761045	+	NIPSNAP3B	chr9	107535103	+
intron-3UTR	ENST00000493854	ENST00000461177		TCGA	RV	PRAD	TCGA-HC-7821-01A	RABGAP1	chr9	125761045	+	NIPSNAP3B	chr9	107535103	+
intron-3CDS	ENST00000373643	ENST00000374762		TCGA	RV	PRAD	TCGA-HC-7821-01A	RABGAP1	chr9	125761045	+	NIPSNAP3B	chr9	107535103	+
intron-3UTR	ENST00000373643	ENST00000461177		TCGA	RV	PRAD	TCGA-HC-7821-01A	RABGAP1	chr9	125761045	+	NIPSNAP3B	chr9	107535103	+
In-frame	ENST00000370010	ENST00000338432		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000370010	ENST00000377854		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000370010	ENST00000377848		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000370010	ENST00000543080		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000370010	ENST00000543201		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000370014	ENST00000338432		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000370014	ENST00000377854		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000370014	ENST00000377848		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000370014	ENST00000543080		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000370014	ENST00000543201		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000447266	ENST00000338432		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000447266	ENST00000377854		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000447266	ENST00000377848		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000447266	ENST00000543080		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000447266	ENST00000543201		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-3CDS	ENST00000541192	ENST00000338432		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-3CDS	ENST00000541192	ENST00000377854		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-3CDS	ENST00000541192	ENST00000377848		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-intron	ENST00000541192	ENST00000543080		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-intron	ENST00000541192	ENST00000543201		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000327284	ENST00000338432		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000327284	ENST00000377854		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
In-frame	ENST00000327284	ENST00000377848		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000327284	ENST00000543080		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5CDS-intron	ENST00000327284	ENST00000543201		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-3CDS	ENST00000436928	ENST00000338432		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-3CDS	ENST00000436928	ENST00000377854		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-3CDS	ENST00000436928	ENST00000377848		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-intron	ENST00000436928	ENST00000543080		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
intron-intron	ENST00000436928	ENST00000543201		TCGA	RV	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333676	+	ACACB	chr12	109680242	+
5UTR-3CDS	ENST00000400968	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
5UTR-3CDS	ENST00000400968	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
5UTR-3CDS	ENST00000432079	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
5UTR-3CDS	ENST00000432079	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
3UTR-3CDS	ENST00000460715	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
3UTR-3CDS	ENST00000460715	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000416058	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000416058	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367446	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367446	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367445	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367445	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367444	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367444	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367443	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367443	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367441	ENST00000367338		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
intron-3CDS	ENST00000367441	ENST00000362061		TCGA	RV	PRAD	TCGA-VP-A875-01A	TROVE2	chr1	193028906	+	CACNA1S	chr1	201039532	-
5UTR-3CDS	ENST00000452400	ENST00000338825		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NCOA2	chr8	71315935	-	EIF4EBP1	chr8	37914599	+
5UTR-3UTR	ENST00000452400	ENST00000520657		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NCOA2	chr8	71315935	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000267974	ENST00000338825		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NCOA2	chr8	71315935	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000267974	ENST00000520657		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NCOA2	chr8	71315935	-	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000524223	ENST00000338825		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NCOA2	chr8	71315935	-	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000524223	ENST00000520657		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NCOA2	chr8	71315935	-	EIF4EBP1	chr8	37914599	+
5UTR-3CDS	ENST00000402198	ENST00000282538		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-intron	ENST00000402198	ENST00000498387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-intron	ENST00000402198	ENST00000454381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-3CDS	ENST00000402466	ENST00000282538		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-intron	ENST00000402466	ENST00000498387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-intron	ENST00000402466	ENST00000454381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-3CDS	ENST00000406341	ENST00000282538		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-intron	ENST00000406341	ENST00000498387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
5UTR-intron	ENST00000406341	ENST00000454381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-3CDS	ENST00000407969	ENST00000282538		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-intron	ENST00000407969	ENST00000498387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-intron	ENST00000407969	ENST00000454381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-3CDS	ENST00000302463	ENST00000282538		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-intron	ENST00000302463	ENST00000498387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-intron	ENST00000302463	ENST00000454381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-3CDS	ENST00000488236	ENST00000282538		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-intron	ENST00000488236	ENST00000498387		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
intron-intron	ENST00000488236	ENST00000454381		TCGA	RV	PRAD	TCGA-ZG-A8QZ-01A	SETD5	chr3	9439661	+	GADL1	chr3	30898633	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5497-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-3UTR	ENST00000453744	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453744	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453744	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453744	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000453744	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000453744	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394801	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394801	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394801	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394801	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394801	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000394801	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394803	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394803	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394803	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394803	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394803	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000394803	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394804	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394804	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394804	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394804	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000394804	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000394804	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000343106	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000343106	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000343106	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000343106	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000343106	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000343106	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000321805	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000321805	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000321805	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000321805	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000321805	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000321805	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000350435	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000350435	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000350435	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000350435	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000350435	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-intron	ENST00000350435	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000338145	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000338145	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000338145	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000338145	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000338145	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000338145	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000349311	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000349311	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000349311	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000349311	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000349311	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000349311	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000504211	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000504211	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000504211	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000504211	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000504211	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-intron	ENST00000504211	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000357194	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000357194	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000357194	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000357194	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000357194	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-intron	ENST00000357194	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000505207	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000505207	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000505207	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000505207	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000505207	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-intron	ENST00000505207	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000507845	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000507845	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000507845	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000507845	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000507845	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-intron	ENST00000507845	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000502404	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000502404	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000502404	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000502404	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000502404	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
intron-intron	ENST00000502404	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-3UTR	ENST00000513098	ENST00000515255		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-3UTR	ENST00000513098	ENST00000394730		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-3UTR	ENST00000513098	ENST00000515279		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-3UTR	ENST00000513098	ENST00000360505		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-3UTR	ENST00000513098	ENST00000394728		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-intron	ENST00000513098	ENST00000507281		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	UBE2D3	chr4	103747642	-	GSTCD	chr4	106744111	+
5UTR-5UTR	ENST00000282488	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282488	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282488	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000282488	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000282488	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282488	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282488	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000282488	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282488	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282486	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282486	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282486	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000282486	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000282486	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282486	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282486	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000282486	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000282486	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000355460	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000355460	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000355460	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000355460	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000355460	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000355460	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000355460	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000355460	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000355460	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000493459	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000493459	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000493459	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000493459	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000493459	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000493459	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000493459	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000493459	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000493459	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000324210	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000324210	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000324210	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000324210	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000324210	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000324210	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000324210	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-intron	ENST00000324210	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-5UTR	ENST00000324210	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000498502	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000498502	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000498502	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000498502	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000498502	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000498502	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000498502	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000498502	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000498502	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000545754	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000545754	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000545754	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000545754	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000545754	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000545754	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000545754	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000545754	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000545754	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000357472	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000357472	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000357472	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000357472	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000357472	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000357472	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000357472	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000357472	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000357472	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000324196	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000324196	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000324196	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000324196	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000324196	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000324196	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000324196	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000324196	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000324196	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485910	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485910	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485910	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000485910	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000485910	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485910	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485910	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000485910	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485910	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000463374	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000463374	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000463374	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000463374	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000463374	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000463374	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000463374	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000463374	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000463374	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492948	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492948	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492948	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000492948	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000492948	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492948	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492948	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000492948	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000492948	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485509	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485509	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485509	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000485509	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000485509	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485509	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485509	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-intron	ENST00000485509	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
intron-5UTR	ENST00000485509	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-5UTR	ENST00000461436	ENST00000406164		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-5UTR	ENST00000461436	ENST00000406824		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-5UTR	ENST00000461436	ENST00000339837		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-intron	ENST00000461436	ENST00000413939		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-intron	ENST00000461436	ENST00000296202		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-5UTR	ENST00000461436	ENST00000511444		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-5UTR	ENST00000461436	ENST00000512391		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-intron	ENST00000461436	ENST00000514703		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
3UTR-5UTR	ENST00000461436	ENST00000507242		TCGA	RV	PRAD	TCGA-EJ-7792-01A	MBNL1	chr3	151986881	+	NMNAT3	chr3	139297897	-
5UTR-3CDS	ENST00000361905	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000361905	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000361905	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000361905	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000361905	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3UTR	ENST00000361905	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527636	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527636	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527636	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527636	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527636	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3UTR	ENST00000527636	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527575	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527575	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527575	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527575	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000527575	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3UTR	ENST00000527575	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000334310	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000334310	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000334310	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000334310	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3CDS	ENST00000334310	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-3UTR	ENST00000334310	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000361985	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000361985	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000361985	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000361985	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000361985	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3UTR	ENST00000361985	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000526600	ENST00000537344		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000526600	ENST00000256194		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000526600	ENST00000527546		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000526600	ENST00000342902		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3CDS	ENST00000526600	ENST00000379612		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
intron-3UTR	ENST00000526600	ENST00000527195		TCGA	RV	PRAD	TCGA-EJ-5503-01A	TEAD1	chr11	12697108	+	MICAL2	chr11	12229570	+
5UTR-5UTR	ENST00000515059	ENST00000430479		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-intron	ENST00000515059	ENST00000399357		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-intron	ENST00000515059	ENST00000420159		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-5UTR	ENST00000515059	ENST00000343495		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-5UTR	ENST00000515059	ENST00000242066		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-5UTR	ENST00000515059	ENST00000405192		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-intron	ENST00000515059	ENST00000405358		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-intron	ENST00000515059	ENST00000403527		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-5UTR	ENST00000515059	ENST00000405218		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-5UTR	ENST00000515059	ENST00000403685		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
5UTR-intron	ENST00000515059	ENST00000476720		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000440890	ENST00000430479		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000440890	ENST00000399357		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000440890	ENST00000420159		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000440890	ENST00000343495		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000440890	ENST00000242066		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000440890	ENST00000405192		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000440890	ENST00000405358		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000440890	ENST00000403527		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000440890	ENST00000405218		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000440890	ENST00000403685		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000440890	ENST00000476720		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000264568	ENST00000430479		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000264568	ENST00000399357		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000264568	ENST00000420159		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000264568	ENST00000343495		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000264568	ENST00000242066		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000264568	ENST00000405192		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000264568	ENST00000405358		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000264568	ENST00000403527		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000264568	ENST00000405218		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000264568	ENST00000403685		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000264568	ENST00000476720		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000394931	ENST00000430479		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000394931	ENST00000399357		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000394931	ENST00000420159		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000394931	ENST00000343495		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000394931	ENST00000242066		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000394931	ENST00000405192		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000394931	ENST00000405358		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000394931	ENST00000403527		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000394931	ENST00000405218		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000394931	ENST00000403685		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000394931	ENST00000476720		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000502683	ENST00000430479		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000502683	ENST00000399357		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000502683	ENST00000420159		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000502683	ENST00000343495		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000502683	ENST00000242066		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000502683	ENST00000405192		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000502683	ENST00000405358		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000502683	ENST00000403527		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000502683	ENST00000405218		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-5UTR	ENST00000502683	ENST00000403685		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
intron-intron	ENST00000502683	ENST00000476720		TCGA	RV	PRAD	TCGA-SU-A7E7-01A	BMPR1B	chr4	95679219	+	ETV1	chr7	14028764	-
In-frame	ENST00000367549	ENST00000303204		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	DHX9	chr1	182850782	+	PRELID1	chr5	176733423	+
5CDS-intron	ENST00000367549	ENST00000503216		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	DHX9	chr1	182850782	+	PRELID1	chr5	176733423	+
5CDS-intron	ENST00000367549	ENST00000502670		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	DHX9	chr1	182850782	+	PRELID1	chr5	176733423	+
3UTR-3CDS	ENST00000485081	ENST00000303204		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	DHX9	chr1	182850782	+	PRELID1	chr5	176733423	+
3UTR-intron	ENST00000485081	ENST00000503216		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	DHX9	chr1	182850782	+	PRELID1	chr5	176733423	+
3UTR-intron	ENST00000485081	ENST00000502670		TCGA	RV	PRAD	TCGA-TK-A8OK-01A	DHX9	chr1	182850782	+	PRELID1	chr5	176733423	+
Frame-shit	ENST00000370010	ENST00000370363		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000370010	ENST00000370359		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000370014	ENST00000370363		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000370014	ENST00000370359		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000447266	ENST00000370363		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000447266	ENST00000370359		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
intron-3CDS	ENST00000541192	ENST00000370363		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
intron-3CDS	ENST00000541192	ENST00000370359		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000327284	ENST00000370363		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
Frame-shit	ENST00000327284	ENST00000370359		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
intron-3CDS	ENST00000436928	ENST00000370363		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
intron-3CDS	ENST00000436928	ENST00000370359		TCGA	RV	PRAD	TCGA-HC-7210-01A	SENP6	chr6	76344527	+	OOEP	chr6	74079108	-
In-frame	ENST00000230640	ENST00000366510		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SKIV2L2	chr5	54711960	+	SCCPDH	chr1	246890194	+
In-frame	ENST00000545714	ENST00000366510		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SKIV2L2	chr5	54711960	+	SCCPDH	chr1	246890194	+
intron-3CDS	ENST00000504388	ENST00000366510		TCGA	RV	PRAD	TCGA-EJ-5519-01A	SKIV2L2	chr5	54711960	+	SCCPDH	chr1	246890194	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000337198	ENST00000407775		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-5UTR	ENST00000337198	ENST00000520492		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000337198	ENST00000517361		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000337198	ENST00000522296		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000337198	ENST00000378472		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-3CDS	ENST00000347770	ENST00000407775		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-5UTR	ENST00000347770	ENST00000520492		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000347770	ENST00000517361		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000347770	ENST00000522296		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000347770	ENST00000378472		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-3CDS	ENST00000522311	ENST00000407775		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-5UTR	ENST00000522311	ENST00000520492		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000522311	ENST00000517361		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000522311	ENST00000522296		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
5UTR-intron	ENST00000522311	ENST00000378472		TCGA	RV	PRAD	TCGA-CH-5767-01A	AZIN1	chr8	103870241	-	ZFPM2	chr8	106456508	+
Frame-shit	ENST00000265659	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000265659	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000265659	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
5CDS-5UTR	ENST00000265659	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375241	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375241	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375241	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
5CDS-5UTR	ENST00000375241	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375240	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375240	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375240	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
5CDS-5UTR	ENST00000375240	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000463569	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000463569	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000463569	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
5CDS-5UTR	ENST00000463569	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375236	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375236	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
Frame-shit	ENST00000375236	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
5CDS-5UTR	ENST00000375236	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000375242	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000375242	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000375242	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-5UTR	ENST00000375242	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000481149	ENST00000303617		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000481149	ENST00000375731		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000481149	ENST00000422391		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-5UTR	ENST00000481149	ENST00000478465		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	CDC14B	chr9	99381501	-	AUH	chr9	94060358	-
intron-3CDS	ENST00000541515	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-3CDS	ENST00000541515	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
intron-5UTR	ENST00000541515	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-5510-01A	LUC7L2	chr7	139045068	+	ETV1	chr7	13978871	-
Frame-shit	ENST00000444716	ENST00000536378		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000444716	ENST00000231790		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000444716	ENST00000458205		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000444716	ENST00000539477		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000444716	ENST00000455445		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000444716	ENST00000435176		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5CDS-intron	ENST00000444716	ENST00000492474		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000302541	ENST00000536378		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000302541	ENST00000231790		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000302541	ENST00000458205		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000302541	ENST00000539477		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000302541	ENST00000455445		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000302541	ENST00000435176		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5CDS-intron	ENST00000302541	ENST00000492474		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000425621	ENST00000536378		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000425621	ENST00000231790		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000425621	ENST00000458205		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000425621	ENST00000539477		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000425621	ENST00000455445		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000425621	ENST00000435176		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5CDS-intron	ENST00000425621	ENST00000492474		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-3CDS	ENST00000396217	ENST00000536378		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-3CDS	ENST00000396217	ENST00000231790		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-3CDS	ENST00000396217	ENST00000458205		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-3CDS	ENST00000396217	ENST00000539477		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-3CDS	ENST00000396217	ENST00000455445		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-3CDS	ENST00000396217	ENST00000435176		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
5UTR-intron	ENST00000396217	ENST00000492474		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000459828	ENST00000536378		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000459828	ENST00000231790		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000459828	ENST00000458205		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000459828	ENST00000539477		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000459828	ENST00000455445		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000459828	ENST00000435176		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-intron	ENST00000459828	ENST00000492474		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000539167	ENST00000536378		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000539167	ENST00000231790		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000539167	ENST00000458205		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000539167	ENST00000539477		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000539167	ENST00000455445		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-3CDS	ENST00000539167	ENST00000435176		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
intron-intron	ENST00000539167	ENST00000492474		TCGA	RV	PRAD	TCGA-KK-A5A1-01A	MYRIP	chr3	39942417	+	MLH1	chr3	37089010	+
Frame-shit	ENST00000507668	ENST00000447632		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
Frame-shit	ENST00000507668	ENST00000413473		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000507668	ENST00000262675		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000507668	ENST00000451380		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000507668	ENST00000371750		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000507668	ENST00000371747		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000507668	ENST00000262676		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000507668	ENST00000530004		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000507668	ENST00000534098		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
In-frame	ENST00000512972	ENST00000447632		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
In-frame	ENST00000512972	ENST00000413473		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512972	ENST00000262675		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512972	ENST00000451380		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512972	ENST00000371750		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512972	ENST00000371747		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512972	ENST00000262676		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000512972	ENST00000530004		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000512972	ENST00000534098		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
Frame-shit	ENST00000509193	ENST00000447632		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
Frame-shit	ENST00000509193	ENST00000413473		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000509193	ENST00000262675		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000509193	ENST00000451380		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000509193	ENST00000371750		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000509193	ENST00000371747		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000509193	ENST00000262676		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000509193	ENST00000530004		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000509193	ENST00000534098		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
Frame-shit	ENST00000512721	ENST00000447632		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
Frame-shit	ENST00000512721	ENST00000413473		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512721	ENST00000262675		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512721	ENST00000451380		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512721	ENST00000371750		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512721	ENST00000371747		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-5UTR	ENST00000512721	ENST00000262676		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000512721	ENST00000530004		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5CDS-intron	ENST00000512721	ENST00000534098		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-3CDS	ENST00000513907	ENST00000447632		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-3CDS	ENST00000513907	ENST00000413473		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000513907	ENST00000262675		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000513907	ENST00000451380		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000513907	ENST00000371750		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000513907	ENST00000371747		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-5UTR	ENST00000513907	ENST00000262676		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-intron	ENST00000513907	ENST00000530004		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
intron-intron	ENST00000513907	ENST00000534098		TCGA	RV	PRAD	TCGA-CH-5771-01A	SERINC5	chr5	79462206	-	TTC39A	chr1	51787497	-
5UTR-3UTR	ENST00000262043	ENST00000522012		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
5UTR-5UTR	ENST00000262043	ENST00000518454		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
5UTR-5UTR	ENST00000262043	ENST00000265806		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
5UTR-5UTR	ENST00000262043	ENST00000411463		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-3UTR	ENST00000509330	ENST00000522012		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000509330	ENST00000518454		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000509330	ENST00000265806		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000509330	ENST00000411463		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-3UTR	ENST00000393387	ENST00000522012		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000393387	ENST00000518454		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000393387	ENST00000265806		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000393387	ENST00000411463		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-3UTR	ENST00000420043	ENST00000522012		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000420043	ENST00000518454		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000420043	ENST00000265806		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
intron-5UTR	ENST00000420043	ENST00000411463		TCGA	RV	PRAD	TCGA-KK-A8I4-01A	PHF3	chr6	64346055	+	R3HCC1	chr8	23146019	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000344204	ENST00000466202		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
In-frame	ENST00000344204	ENST00000324698		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-intron	ENST00000344204	ENST00000434450		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-intron	ENST00000344204	ENST00000488987		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
In-frame	ENST00000537187	ENST00000466202		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
In-frame	ENST00000537187	ENST00000324698		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-intron	ENST00000537187	ENST00000434450		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-intron	ENST00000537187	ENST00000488987		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
In-frame	ENST00000509967	ENST00000466202		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
In-frame	ENST00000509967	ENST00000324698		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-intron	ENST00000509967	ENST00000434450		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-intron	ENST00000509967	ENST00000488987		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-3CDS	ENST00000515710	ENST00000466202		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-3CDS	ENST00000515710	ENST00000324698		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-intron	ENST00000515710	ENST00000434450		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-intron	ENST00000515710	ENST00000488987		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-3CDS	ENST00000344135	ENST00000466202		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-3CDS	ENST00000344135	ENST00000324698		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-intron	ENST00000344135	ENST00000434450		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
intron-intron	ENST00000344135	ENST00000488987		TCGA	RV	PRAD	TCGA-CH-5741-01A	TRIO	chr5	14304701	+	IQUB	chr7	123097620	-
5CDS-5UTR	ENST00000361354	ENST00000409642		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000361354	ENST00000409876		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000361354	ENST00000409029		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000361354	ENST00000450639		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-intron	ENST00000361354	ENST00000498249		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-intron	ENST00000361354	ENST00000280115		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000360982	ENST00000409642		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000360982	ENST00000409876		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000360982	ENST00000409029		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000360982	ENST00000450639		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-intron	ENST00000360982	ENST00000498249		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-intron	ENST00000360982	ENST00000280115		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
intron-5UTR	ENST00000478449	ENST00000409642		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
intron-5UTR	ENST00000478449	ENST00000409876		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
intron-5UTR	ENST00000478449	ENST00000409029		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
intron-5UTR	ENST00000478449	ENST00000450639		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
intron-intron	ENST00000478449	ENST00000498249		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
intron-intron	ENST00000478449	ENST00000280115		TCGA	RV	PRAD	TCGA-J4-A83J-01A	NCKAP1	chr2	183888534	-	LYPD6B	chr2	149987397	+
5CDS-5UTR	ENST00000295874	ENST00000476844		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000295874	ENST00000492590		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000295874	ENST00000466788		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000295874	ENST00000468189		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000295874	ENST00000341848		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000474889	ENST00000476844		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000474889	ENST00000492590		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000474889	ENST00000466788		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000474889	ENST00000468189		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000474889	ENST00000341848		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000495879	ENST00000476844		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000495879	ENST00000492590		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000495879	ENST00000466788		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000495879	ENST00000468189		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000495879	ENST00000341848		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-A8VV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8262-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000324041	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000324041	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000324041	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000324041	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000597441	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000597441	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000597441	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000597441	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000431178	ENST00000508784		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000431178	ENST00000513320		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000431178	ENST00000379448		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000431178	ENST00000511534		TCGA	RV	PRAD	TCGA-HC-8256-01A	KLK4	chr19	51409608	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000324695	ENST00000408982		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000324695	ENST00000262477		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000324695	ENST00000537505		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000324695	ENST00000546142		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000324695	ENST00000341923		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000324695	ENST00000570487		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000433712	ENST00000408982		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000433712	ENST00000262477		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000433712	ENST00000537505		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000433712	ENST00000546142		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000433712	ENST00000341923		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000433712	ENST00000570487		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000355722	ENST00000408982		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000355722	ENST00000262477		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000355722	ENST00000537505		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000355722	ENST00000546142		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000355722	ENST00000341923		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000355722	ENST00000570487		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000409625	ENST00000408982		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000409625	ENST00000262477		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000409625	ENST00000537505		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000409625	ENST00000546142		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000409625	ENST00000341923		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000409625	ENST00000570487		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000466594	ENST00000408982		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000466594	ENST00000262477		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000466594	ENST00000537505		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000466594	ENST00000546142		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000466594	ENST00000341923		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000466594	ENST00000570487		TCGA	RV	PRAD	TCGA-G9-6371-01A	TRPM8	chr2	234928166	+	RABEP1	chr17	5283828	+
5UTR-3UTR	ENST00000300557	ENST00000607371		TCGA	RV	PRAD	TCGA-G9-6348-01A	PRR15L	chr17	46035023	-	KCNH4	chr17	40309136	-
5UTR-3UTR	ENST00000300557	ENST00000264661		TCGA	RV	PRAD	TCGA-G9-6348-01A	PRR15L	chr17	46035023	-	KCNH4	chr17	40309136	-
Frame-shit	ENST00000221494	ENST00000233997		TCGA	RV	PRAD	TCGA-KK-A8ID-01A	SF3A2	chr19	2243543	+	AZU1	chr19	828230	+
Frame-shit	ENST00000436008	ENST00000303635		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000436008	ENST00000439411		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000436008	ENST00000476163		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000436008	ENST00000557126		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000436008	ENST00000473578		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000436008	ENST00000467404		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000436008	ENST00000476864		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000406686	ENST00000303635		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000406686	ENST00000439411		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000406686	ENST00000476163		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000406686	ENST00000557126		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000406686	ENST00000473578		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000406686	ENST00000467404		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000406686	ENST00000476864		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
In-frame	ENST00000380302	ENST00000303635		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
In-frame	ENST00000380302	ENST00000439411		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380302	ENST00000476163		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380302	ENST00000557126		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380302	ENST00000473578		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380302	ENST00000467404		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380302	ENST00000476864		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000490273	ENST00000303635		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000490273	ENST00000439411		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000490273	ENST00000476163		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000490273	ENST00000557126		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000490273	ENST00000473578		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000490273	ENST00000467404		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000490273	ENST00000476864		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000380298	ENST00000303635		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
Frame-shit	ENST00000380298	ENST00000439411		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380298	ENST00000476163		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380298	ENST00000557126		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380298	ENST00000473578		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380298	ENST00000467404		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-intron	ENST00000380298	ENST00000476864		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-3CDS	ENST00000433689	ENST00000303635		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-3CDS	ENST00000433689	ENST00000439411		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000433689	ENST00000476163		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000433689	ENST00000557126		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000433689	ENST00000473578		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000433689	ENST00000467404		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
intron-intron	ENST00000433689	ENST00000476864		TCGA	RV	PRAD	TCGA-HC-A632-01A	SLC22A23	chr6	3410422	-	CAMTA1	chr1	6880241	+
5CDS-5UTR	ENST00000066544	ENST00000572316		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000066544	ENST00000354968		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000066544	ENST00000393450		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000531206	ENST00000572316		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000531206	ENST00000354968		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000531206	ENST00000393450		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000446365	ENST00000572316		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000446365	ENST00000354968		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5UTR-5UTR	ENST00000446365	ENST00000393450		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000527547	ENST00000572316		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000527547	ENST00000354968		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5CDS-5UTR	ENST00000527547	ENST00000393450		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
intron-5UTR	ENST00000528748	ENST00000572316		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
intron-5UTR	ENST00000528748	ENST00000354968		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
intron-5UTR	ENST00000528748	ENST00000393450		TCGA	RV	PRAD	TCGA-HC-7213-01A	CDC27	chr17	45266512	-	MYL4	chr17	45286755	+
5UTR-3CDS	ENST00000373233	ENST00000373184		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373233	ENST00000373187		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373233	ENST00000356100		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373233	ENST00000373190		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373233	ENST00000373193		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373233	ENST00000373198		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373233	ENST00000373201		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-intron	ENST00000373233	ENST00000485499		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000373184		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000373187		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000356100		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000373190		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000373193		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000373198		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000309279	ENST00000373201		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-intron	ENST00000309279	ENST00000485499		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000373184		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000373187		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000356100		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000373190		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000373193		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000373198		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-3CDS	ENST00000373222	ENST00000373201		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5UTR-intron	ENST00000373222	ENST00000485499		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000373184		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000373187		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000356100		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000373190		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000373193		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000373198		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-3CDS	ENST00000480022	ENST00000373201		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
intron-intron	ENST00000480022	ENST00000485499		TCGA	RV	PRAD	TCGA-ZG-A9KY-01A	CHD6	chr20	40246979	-	PTPRT	chr20	40877462	-
5CDS-5UTR	ENST00000368226	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368226	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368226	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368226	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368226	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368226	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368226	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368226	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368226	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368226	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368227	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368227	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368227	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368227	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000532331	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000532331	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000532331	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000532331	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368213	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368213	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368213	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368213	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368210	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368210	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368210	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368210	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368215	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368215	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368215	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368215	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368207	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368207	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000368207	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000368207	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-intron	ENST00000524481	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-intron	ENST00000524481	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-5UTR	ENST00000524481	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5UTR-intron	ENST00000524481	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000454859		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000474289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000525459	ENST00000528402		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000525459	ENST00000454591		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000368291		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000309620		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000430841		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000368289		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-5UTR	ENST00000525459	ENST00000531967		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
5CDS-intron	ENST00000525459	ENST00000488087		TCGA	RV	PRAD	TCGA-EJ-5514-01A	PTPRK	chr6	128841404	-	ECHDC1	chr6	127652175	-
Frame-shit	ENST00000413379	ENST00000539787		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
In-frame	ENST00000413379	ENST00000345358		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000413379	ENST00000391871		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000413379	ENST00000415969		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000413379	ENST00000354470		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000413379	ENST00000293288		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5UTR-3CDS	ENST00000540850	ENST00000539787		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5UTR-3CDS	ENST00000540850	ENST00000345358		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000540850	ENST00000391871		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000540850	ENST00000415969		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000540850	ENST00000354470		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5UTR-3UTR	ENST00000540850	ENST00000293288		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
Frame-shit	ENST00000598840	ENST00000539787		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
In-frame	ENST00000598840	ENST00000345358		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000598840	ENST00000391871		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000598840	ENST00000415969		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000598840	ENST00000354470		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000598840	ENST00000293288		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
Frame-shit	ENST00000270225	ENST00000539787		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
In-frame	ENST00000270225	ENST00000345358		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000270225	ENST00000391871		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000270225	ENST00000415969		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000270225	ENST00000354470		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000270225	ENST00000293288		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
Frame-shit	ENST00000392776	ENST00000539787		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
In-frame	ENST00000392776	ENST00000345358		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000392776	ENST00000391871		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000392776	ENST00000415969		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000392776	ENST00000354470		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
5CDS-3UTR	ENST00000392776	ENST00000293288		TCGA	RV	PRAD	TCGA-EJ-5532-01A	SAE1	chr19	47646862	+	BAX	chr19	49464067	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-4L-AA1F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5CDS-5UTR	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-8257-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39956869	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88Q-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000356462	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000356462	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-intron	ENST00000356462	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000356462	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000400345	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000400345	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-intron	ENST00000400345	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000400345	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-5UTR	ENST00000589054	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-5UTR	ENST00000589054	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-intron	ENST00000589054	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-5UTR	ENST00000589054	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000256832	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000256832	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-intron	ENST00000256832	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000256832	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000382850	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000382850	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-intron	ENST00000382850	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000382850	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000256830	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000256830	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-intron	ENST00000256830	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000256830	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-5UTR	ENST00000588516	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-5UTR	ENST00000588516	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-intron	ENST00000588516	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-5UTR	ENST00000588516	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000456986	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000456986	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-intron	ENST00000456986	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000456986	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000435432	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000435432	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-intron	ENST00000435432	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000435432	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000357895	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000357895	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-intron	ENST00000357895	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000357895	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000586263	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000586263	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-intron	ENST00000586263	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5CDS-5UTR	ENST00000586263	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000456173	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000456173	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-intron	ENST00000456173	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000456173	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000431212	ENST00000396516		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000431212	ENST00000355758		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-intron	ENST00000431212	ENST00000575984		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
5UTR-5UTR	ENST00000431212	ENST00000575170		TCGA	RV	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	ZC3H7A	chr16	11876244	-
intron-3CDS	ENST00000331483	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000331483	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000331483	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000331483	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000331483	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000576390	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000576390	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000576390	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000576390	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000576390	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000439918	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000439918	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000439918	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000439918	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000439918	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000472244	ENST00000355257		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000472244	ENST00000215956		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-3CDS	ENST00000472244	ENST00000401959		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000472244	ENST00000463675		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
intron-5UTR	ENST00000472244	ENST00000402458		TCGA	RV	PRAD	TCGA-EJ-7791-01A	P4HB	chr17	79801042	-	NHP2L1	chr22	42071199	-
Frame-shit	ENST00000549920	ENST00000376929		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000549920	ENST00000506690		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000549920	ENST00000389805		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000549920	ENST00000402874		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000549920	ENST00000510187		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000549920	ENST00000360718		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000550645	ENST00000376929		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000550645	ENST00000506690		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000550645	ENST00000389805		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000550645	ENST00000402874		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000550645	ENST00000510187		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000550645	ENST00000360718		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000552588	ENST00000376929		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000552588	ENST00000506690		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000552588	ENST00000389805		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000552588	ENST00000402874		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000552588	ENST00000510187		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000552588	ENST00000360718		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000549273	ENST00000376929		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549273	ENST00000506690		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549273	ENST00000389805		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549273	ENST00000402874		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549273	ENST00000510187		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000549273	ENST00000360718		TCGA	RV	PRAD	TCGA-J9-A8CN-01A	RPL18	chr19	49118588	-	SQSTM1	chr5	179250858	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-FC-7708-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000503238	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000358350	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000537810	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000264319	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000507711	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-3CDS	ENST00000514783	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000514783	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
5UTR-5UTR	ENST00000514783	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-3CDS	ENST00000507873	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-3CDS	ENST00000506685	ENST00000508632		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	FRYL	chr4	48686690	-	OCIAD2	chr4	48887582	-
In-frame	ENST00000265909	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000265909	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000265909	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000265909	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
5CDS-intron	ENST00000265909	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
5CDS-intron	ENST00000265909	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000534726	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000534726	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000534726	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000534726	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000534726	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000534726	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000545537	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000545537	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000545537	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000545537	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000545537	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000545537	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000426933	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000426933	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000426933	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000426933	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000426933	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000426933	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000533318	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000533318	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000533318	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000533318	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000533318	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000533318	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000530356	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000530356	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000530356	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000530356	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000530356	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000530356	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000539184	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000539184	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000539184	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000539184	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000539184	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000539184	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000528555	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000528555	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000528555	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-3CDS	ENST00000528555	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000528555	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
intron-intron	ENST00000528555	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000533214	ENST00000003302		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000533214	ENST00000260188		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000533214	ENST00000544967		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000533214	ENST00000545540		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
5CDS-intron	ENST00000533214	ENST00000537706		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
5CDS-intron	ENST00000533214	ENST00000542033		TCGA	RV	PRAD	TCGA-HC-7232-01A	SNX19	chr11	130784161	-	USP28	chr11	113675768	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-5UTR	ENST00000462705	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000393785	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000481632	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000471418	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-5UTR	ENST00000357258	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000464560	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
5UTR-5UTR	ENST00000488663	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000474710	ENST00000498645		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ZBTB20	chr3	114693213	-	LSAMP	chr3	115738487	-
Frame-shit	ENST00000357001	ENST00000398907		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
Frame-shit	ENST00000357001	ENST00000398905		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
Frame-shit	ENST00000357001	ENST00000288319		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000398897		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000398911		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000398910		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000417133		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000442448		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000453032		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000398919		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000429727		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000357001	ENST00000485493		TCGA	RV	PRAD	TCGA-KC-A4BR-01A	GUCA2A	chr1	42629074	-	ERG	chr21	39817544	-
In-frame	ENST00000355072	ENST00000399820		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
In-frame	ENST00000355072	ENST00000288634		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
5CDS-intron	ENST00000355072	ENST00000506503		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
5CDS-intron	ENST00000355072	ENST00000515631		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
intron-3CDS	ENST00000513806	ENST00000399820		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
intron-3CDS	ENST00000513806	ENST00000288634		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
intron-intron	ENST00000513806	ENST00000506503		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
intron-intron	ENST00000513806	ENST00000515631		TCGA	RV	PRAD	TCGA-V1-A9OL-01A	HTT	chr4	3190820	+	WDR19	chr4	39257468	+
In-frame	ENST00000265260	ENST00000350721		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
In-frame	ENST00000265260	ENST00000383101		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
intron-3CDS	ENST00000469941	ENST00000350721		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
intron-3CDS	ENST00000469941	ENST00000383101		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
In-frame	ENST00000296024	ENST00000350721		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
In-frame	ENST00000296024	ENST00000383101		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
intron-3CDS	ENST00000486406	ENST00000350721		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
intron-3CDS	ENST00000486406	ENST00000383101		TCGA	RV	PRAD	TCGA-YL-A9WK-01A	PCNP	chr3	101298848	+	ATR	chr3	142185375	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-intron	ENST00000532456	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000532456	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000532456	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000532456	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000532456	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000532456	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000532456	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000539648	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000528499	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000263574	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000345598	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
intron-intron	ENST00000338167	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000278756	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000270189		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000429089		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000220809		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000352041		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000519510		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000429710		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000543137	ENST00000524009		TCGA	RV	PRAD	TCGA-HC-7213-01A	APLP2	chr11	130014699	+	PLAT	chr8	42051245	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000448552	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000448552	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000448552	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000448552	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000448552	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000448552	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-3CDS	ENST00000306585	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000306585	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000306585	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000306585	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000306585	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000306585	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-3CDS	ENST00000523421	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000523421	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000523421	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000523421	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000523421	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000523421	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-3CDS	ENST00000518041	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000518041	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000518041	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000518041	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000518041	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000518041	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-3CDS	ENST00000574807	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000574807	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000574807	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000574807	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000574807	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000574807	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-3CDS	ENST00000398235	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000398235	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000398235	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000398235	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000398235	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000398235	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-3CDS	ENST00000519520	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000519520	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000519520	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000519520	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000519520	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000519520	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-3CDS	ENST00000520529	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000520529	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000520529	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000520529	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000520529	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
5UTR-intron	ENST00000520529	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-3CDS	ENST00000522091	ENST00000337137		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000522091	ENST00000380995		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000522091	ENST00000407381		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000522091	ENST00000355704		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000522091	ENST00000472791		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000522091	ENST00000406733		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	CHTF8	chr16	69165992	-	TBC1D22A	chr22	47569141	+
intron-intron	ENST00000331483	ENST00000313164		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000331483	ENST00000494960		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000576390	ENST00000313164		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000576390	ENST00000494960		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000439918	ENST00000313164		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000439918	ENST00000494960		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000472244	ENST00000313164		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
intron-intron	ENST00000472244	ENST00000494960		TCGA	RV	PRAD	TCGA-EJ-7125-01A	P4HB	chr17	79801042	-	C7	chr5	40954982	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-A8FO-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000570137	ENST00000543418		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000570137	ENST00000392833		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000570137	ENST00000362010		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000570137	ENST00000392832		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000570137	ENST00000469007		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000570137	ENST00000494677		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000570137	ENST00000537559		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000570137	ENST00000468233		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000562812	ENST00000543418		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000562812	ENST00000392833		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000562812	ENST00000362010		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000562812	ENST00000392832		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000562812	ENST00000469007		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000562812	ENST00000494677		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000562812	ENST00000537559		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000562812	ENST00000468233		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000566173	ENST00000543418		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000566173	ENST00000392833		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000566173	ENST00000362010		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000566173	ENST00000392832		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000566173	ENST00000469007		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000566173	ENST00000494677		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000566173	ENST00000537559		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000566173	ENST00000468233		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000563890	ENST00000543418		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000563890	ENST00000392833		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000563890	ENST00000362010		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
Frame-shit	ENST00000563890	ENST00000392832		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000563890	ENST00000469007		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000563890	ENST00000494677		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000563890	ENST00000537559		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
5CDS-intron	ENST00000563890	ENST00000468233		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-3CDS	ENST00000562753	ENST00000543418		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-3CDS	ENST00000562753	ENST00000392833		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-3CDS	ENST00000562753	ENST00000362010		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-3CDS	ENST00000562753	ENST00000392832		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-intron	ENST00000562753	ENST00000469007		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-intron	ENST00000562753	ENST00000494677		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-intron	ENST00000562753	ENST00000537559		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-intron	ENST00000562753	ENST00000468233		TCGA	RV	PRAD	TCGA-HC-7744-01A	CDYL2	chr16	80838047	-	VEPH1	chr3	157082301	-
intron-3CDS	ENST00000231751	ENST00000369002		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
intron-intron	ENST00000231751	ENST00000460009		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000426532	ENST00000369002		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000426532	ENST00000460009		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000417439	ENST00000369002		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
intron-intron	ENST00000417439	ENST00000460009		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000493056	ENST00000369002		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
intron-intron	ENST00000493056	ENST00000460009		TCGA	RV	PRAD	TCGA-H9-A6BX-01A	LTF	chr3	46477510	-	SEC63	chr6	108214782	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000378825	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378825	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378825	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378825	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378825	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378825	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378839	ENST00000351325		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378839	ENST00000589209		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378839	ENST00000455515		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378839	ENST00000588715		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378839	ENST00000588607		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000378839	ENST00000588081		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	CCDC3	chr10	13040338	-	FXYD1	chr19	35630980	+
intron-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42879877	-	ERG	chr21	39795483	-
Frame-shit	ENST00000380542	ENST00000323116		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000380542	ENST00000493826		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000380542	ENST00000482794		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
intron-3CDS	ENST00000469089	ENST00000323116		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
intron-intron	ENST00000469089	ENST00000493826		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
intron-intron	ENST00000469089	ENST00000482794		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
In-frame	ENST00000526115	ENST00000323116		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000526115	ENST00000493826		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
5CDS-intron	ENST00000526115	ENST00000482794		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	NAP1L4	chr11	2985910	-	ATP11B	chr3	182631649	+
intron-intron	ENST00000548589	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000548589	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000552699	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000267115	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000549385	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000423828	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000395006	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000513761		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000347613		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000360642		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000504131		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000547798	ENST00000506924		TCGA	RV	PRAD	TCGA-G9-6371-01A	TMBIM6	chr12	50158717	+	CLCN3	chr4	170623929	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87D-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SA-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000367837	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
intron-3CDS	ENST00000527578	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
In-frame	ENST00000415177	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
In-frame	ENST00000367826	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
5UTR-3CDS	ENST00000367824	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
5UTR-3CDS	ENST00000445176	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
In-frame	ENST00000314674	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
In-frame	ENST00000367822	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
In-frame	ENST00000367820	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
intron-3CDS	ENST00000525067	ENST00000274520		TCGA	RV	PRAD	TCGA-EJ-7794-01A	HBS1L	chr6	135371720	-	IL9	chr5	135228199	-
5CDS-5UTR	ENST00000323851	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000323851	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000323851	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000354944	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000354944	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000354944	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000521414	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000521414	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000521414	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5UTR-5UTR	ENST00000537882	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5UTR-5UTR	ENST00000537882	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5UTR-5UTR	ENST00000537882	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000414097	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000414097	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
5CDS-5UTR	ENST00000414097	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000518176	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000518176	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000518176	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000522476	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000522476	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000522476	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000518066	ENST00000259523		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000518066	ENST00000377970		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-5UTR	ENST00000518066	ENST00000524013		TCGA	RV	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292475	-	MYC	chr8	128750497	+
intron-intron	ENST00000401702	ENST00000398178		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000401702	ENST00000334268		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000401702	ENST00000546248		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000401702	ENST00000542443		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397326	ENST00000398178		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397326	ENST00000334268		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397326	ENST00000546248		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397326	ENST00000542443		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397328	ENST00000398178		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397328	ENST00000334268		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397328	ENST00000546248		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000397328	ENST00000542443		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000359787	ENST00000398178		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000359787	ENST00000334268		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000359787	ENST00000546248		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000359787	ENST00000542443		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000406324	ENST00000398178		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000406324	ENST00000334268		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000406324	ENST00000546248		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000406324	ENST00000542443		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000472240	ENST00000398178		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000472240	ENST00000334268		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000472240	ENST00000546248		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
intron-intron	ENST00000472240	ENST00000542443		TCGA	RV	PRAD	TCGA-G9-6338-01A	MB	chr22	36002817	-	TRDN	chr6	123758551	-
5CDS-intron	ENST00000331483	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000331483	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000576390	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000439918	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000322776		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000532303		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000529927		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000415352		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000472244	ENST00000526169		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	P4HB	chr17	79801037	-	NDUFV1	chr11	67375697	+
intron-3CDS	ENST00000368020	ENST00000367879		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-intron	ENST00000368020	ENST00000372212		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-3UTR	ENST00000368020	ENST00000462329		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-5UTR	ENST00000368020	ENST00000469256		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-5UTR	ENST00000368020	ENST00000470820		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-3CDS	ENST00000368021	ENST00000367879		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-intron	ENST00000368021	ENST00000372212		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-3UTR	ENST00000368021	ENST00000462329		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-5UTR	ENST00000368021	ENST00000469256		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-5UTR	ENST00000368021	ENST00000470820		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-3CDS	ENST00000435396	ENST00000367879		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-intron	ENST00000435396	ENST00000372212		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-3UTR	ENST00000435396	ENST00000462329		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-5UTR	ENST00000435396	ENST00000469256		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
5UTR-5UTR	ENST00000435396	ENST00000470820		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-3CDS	ENST00000368019	ENST00000367879		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-intron	ENST00000368019	ENST00000372212		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-3UTR	ENST00000368019	ENST00000462329		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-5UTR	ENST00000368019	ENST00000469256		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
intron-5UTR	ENST00000368019	ENST00000470820		TCGA	RV	PRAD	TCGA-EJ-5518-01A	USF1	chr1	161015648	-	UCK2	chr1	165865427	+
3UTR-intron	ENST00000263645	ENST00000371989		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
3UTR-intron	ENST00000263645	ENST00000485435		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
3UTR-intron	ENST00000263645	ENST00000545297		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
3UTR-intron	ENST00000263645	ENST00000467910		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
3UTR-intron	ENST00000263645	ENST00000371991		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000492627	ENST00000371989		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000492627	ENST00000485435		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000492627	ENST00000545297		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000492627	ENST00000467910		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000492627	ENST00000371991		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000381036	ENST00000371989		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000381036	ENST00000485435		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000381036	ENST00000545297		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000381036	ENST00000467910		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000381036	ENST00000371991		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000526072	ENST00000371989		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000526072	ENST00000485435		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000526072	ENST00000545297		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000526072	ENST00000467910		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000526072	ENST00000371991		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000524805	ENST00000371989		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000524805	ENST00000485435		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000524805	ENST00000545297		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000524805	ENST00000467910		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000524805	ENST00000371991		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000481687	ENST00000371989		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000481687	ENST00000485435		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000481687	ENST00000545297		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000481687	ENST00000467910		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
intron-intron	ENST00000481687	ENST00000371991		TCGA	RV	PRAD	TCGA-HC-7747-01A	CD81	chr11	2418627	+	SURF4	chr9	136239529	-
5CDS-5UTR	ENST00000396373	ENST00000266395		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ETV6	chr12	11803094	+	PDE6H	chr12	15130906	+
3UTR-5UTR	ENST00000544715	ENST00000266395		TCGA	RV	PRAD	TCGA-J4-AATZ-01A	ETV6	chr12	11803094	+	PDE6H	chr12	15130906	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5499-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000380338		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000332149	ENST00000355930		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000332149	ENST00000429426		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000332149	ENST00000475957		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-intron	ENST00000332149	ENST00000380321		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
Frame-shit	ENST00000398585	ENST00000380338		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000398585	ENST00000355930		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000398585	ENST00000429426		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000398585	ENST00000475957		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-intron	ENST00000398585	ENST00000380321		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
Frame-shit	ENST00000458356	ENST00000380338		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000458356	ENST00000355930		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000458356	ENST00000429426		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-5UTR	ENST00000458356	ENST00000475957		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-intron	ENST00000458356	ENST00000380321		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
intron-3CDS	ENST00000497881	ENST00000380338		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
intron-5UTR	ENST00000497881	ENST00000355930		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
intron-5UTR	ENST00000497881	ENST00000429426		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
intron-5UTR	ENST00000497881	ENST00000475957		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
intron-intron	ENST00000497881	ENST00000380321		TCGA	RV	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42851099	-	MLLT3	chr9	20620833	-
5CDS-intron	ENST00000400520	ENST00000270189		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000400520	ENST00000429089		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000400520	ENST00000220809		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000400520	ENST00000352041		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000400520	ENST00000519510		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000400520	ENST00000429710		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000400520	ENST00000524009		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000270189		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000429089		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000220809		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000352041		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000519510		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000429710		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000496748	ENST00000524009		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000270189		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000429089		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000220809		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000352041		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000519510		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000429710		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000375111	ENST00000524009		TCGA	RV	PRAD	TCGA-YL-A9WH-01A	PLA2G2A	chr1	20301925	-	PLAT	chr8	42051245	-
Frame-shit	ENST00000332149	ENST00000288602		TCGA	RV	PRAD	TCGA-FC-A6HD-01A	TMPRSS2	chr21	42866283	-	BRAF	chr7	140481493	-
Frame-shit	ENST00000398585	ENST00000288602		TCGA	RV	PRAD	TCGA-FC-A6HD-01A	TMPRSS2	chr21	42866283	-	BRAF	chr7	140481493	-
In-frame	ENST00000458356	ENST00000288602		TCGA	RV	PRAD	TCGA-FC-A6HD-01A	TMPRSS2	chr21	42866283	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000497881	ENST00000288602		TCGA	RV	PRAD	TCGA-FC-A6HD-01A	TMPRSS2	chr21	42866283	-	BRAF	chr7	140481493	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5521-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6351-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
Frame-shit	ENST00000465804	ENST00000350721		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
Frame-shit	ENST00000465804	ENST00000383101		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
Frame-shit	ENST00000360632	ENST00000350721		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
Frame-shit	ENST00000360632	ENST00000383101		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
In-frame	ENST00000467467	ENST00000350721		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
In-frame	ENST00000467467	ENST00000383101		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
intron-3CDS	ENST00000474080	ENST00000350721		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
intron-3CDS	ENST00000474080	ENST00000383101		TCGA	RV	PRAD	TCGA-VN-A88M-01A	WWTR1	chr3	149374663	-	ATR	chr3	142168444	-
In-frame	ENST00000352456	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000352456	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-5UTR	ENST00000352456	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000352456	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
In-frame	ENST00000595018	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000595018	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-5UTR	ENST00000595018	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000595018	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
In-frame	ENST00000392006	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000392006	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-5UTR	ENST00000392006	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000392006	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-3CDS	ENST00000378215	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-intron	ENST00000378215	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-5UTR	ENST00000378215	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-intron	ENST00000378215	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
In-frame	ENST00000602130	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000602130	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-5UTR	ENST00000602130	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000602130	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
In-frame	ENST00000593587	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000593587	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-5UTR	ENST00000593587	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000593587	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
In-frame	ENST00000263367	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000263367	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-5UTR	ENST00000263367	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
5CDS-intron	ENST00000263367	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-3CDS	ENST00000594207	ENST00000236877		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-intron	ENST00000594207	ENST00000539381		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-5UTR	ENST00000594207	ENST00000542837		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
intron-intron	ENST00000594207	ENST00000601757		TCGA	RV	PRAD	TCGA-EJ-5518-01A	HNRNPUL1	chr19	41787180	+	SLC8A2	chr19	47960851	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8I5-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000399357		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000420159		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000343495		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000242066		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405192		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405358		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403527		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405218		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403685		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000399357		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000420159		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000343495		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000242066		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405192		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405358		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403527		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405218		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403685		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	RV	PRAD	TCGA-M7-A71Y-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5CDS-intron	ENST00000361727	ENST00000409500		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
5CDS-intron	ENST00000361727	ENST00000443571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
5CDS-intron	ENST00000361727	ENST00000358406		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
5CDS-intron	ENST00000361727	ENST00000479303		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
5CDS-intron	ENST00000361727	ENST00000494735		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000538075	ENST00000409500		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000538075	ENST00000443571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000538075	ENST00000358406		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000538075	ENST00000479303		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000538075	ENST00000494735		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000463592	ENST00000409500		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000463592	ENST00000443571		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000463592	ENST00000358406		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000463592	ENST00000479303		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
intron-intron	ENST00000463592	ENST00000494735		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	CNTNAP2	chr7	146536996	+	GSTK1	chr7	142960241	+
5CDS-intron	ENST00000296084	ENST00000477496		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000460856		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000240874		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000360013		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000393496		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000291478		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000428018		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000459915		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000462213		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000477496		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000460856		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000240874		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000360013		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000393496		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000291478		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000428018		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000459915		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000462213		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000477496		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000460856		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000240874		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000360013		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000393496		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000291478		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000428018		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000459915		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000462213		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A8IH-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000261168	ENST00000332149		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000261168	ENST00000398585		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000261168	ENST00000458356		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000261168	ENST00000497881		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000543189	ENST00000332149		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000543189	ENST00000398585		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000543189	ENST00000458356		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000543189	ENST00000497881		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000536444	ENST00000332149		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000536444	ENST00000398585		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000536444	ENST00000458356		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000536444	ENST00000497881		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000544627	ENST00000332149		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000544627	ENST00000398585		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000544627	ENST00000458356		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000544627	ENST00000497881		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000541654	ENST00000332149		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000541654	ENST00000398585		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000541654	ENST00000458356		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000541654	ENST00000497881		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000540793	ENST00000332149		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000540793	ENST00000398585		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000540793	ENST00000458356		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000540793	ENST00000497881		TCGA	RV	PRAD	TCGA-EJ-7784-01A	ATF7IP	chr12	14610229	+	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000373867	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000373867	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000373868	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000373868	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000442566	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000442566	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000277705	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000277705	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000419214	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000419214	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
In-frame	ENST00000468840	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000468840	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000435852	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000435852	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
Frame-shit	ENST00000422313	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
5CDS-3UTR	ENST00000422313	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
intron-3CDS	ENST00000510215	ENST00000296370		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
intron-3UTR	ENST00000510215	ENST00000513778		TCGA	RV	PRAD	TCGA-EJ-8474-01A	FAM13C	chr10	61112030	-	S100P	chr4	6698620	+
In-frame	ENST00000370723	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370723	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370723	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370723	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370727	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370727	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370727	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370727	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370725	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370725	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370725	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370725	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370721	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370721	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370721	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370721	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370728	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370728	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370728	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370728	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370730	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370730	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370730	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370730	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
3UTR-3CDS	ENST00000469377	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
3UTR-3CDS	ENST00000469377	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
3UTR-intron	ENST00000469377	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
3UTR-intron	ENST00000469377	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000359929	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000359929	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000359929	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000359929	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370713	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370713	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370713	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370713	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000319517	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000319517	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000319517	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000319517	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370715	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370715	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370715	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370715	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000335786	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000335786	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000335786	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000335786	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000394879	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000394879	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000394879	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000394879	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000271029	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000271029	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000271029	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000271029	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370717	ENST00000354567		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
In-frame	ENST00000370717	ENST00000344720		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370717	ENST00000317704		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
5CDS-intron	ENST00000370717	ENST00000478255		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	LPHN2	chr1	82302742	+	AK5	chr1	77759478	+
intron-3CDS	ENST00000507166	ENST00000299709		TCGA	RV	PRAD	TCGA-EJ-A65B-01A	FIP1L1	chr4	54306775	+	SLC38A8	chr16	84046657	-
In-frame	ENST00000358575	ENST00000299709		TCGA	RV	PRAD	TCGA-EJ-A65B-01A	FIP1L1	chr4	54306775	+	SLC38A8	chr16	84046657	-
intron-3CDS	ENST00000337488	ENST00000299709		TCGA	RV	PRAD	TCGA-EJ-A65B-01A	FIP1L1	chr4	54306775	+	SLC38A8	chr16	84046657	-
intron-3CDS	ENST00000507922	ENST00000299709		TCGA	RV	PRAD	TCGA-EJ-A65B-01A	FIP1L1	chr4	54306775	+	SLC38A8	chr16	84046657	-
intron-3CDS	ENST00000306932	ENST00000299709		TCGA	RV	PRAD	TCGA-EJ-A65B-01A	FIP1L1	chr4	54306775	+	SLC38A8	chr16	84046657	-
intron-3CDS	ENST00000510668	ENST00000299709		TCGA	RV	PRAD	TCGA-EJ-A65B-01A	FIP1L1	chr4	54306775	+	SLC38A8	chr16	84046657	-
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-X4-A8KQ-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6DY-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-J9-A52B-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-3UTR	ENST00000504592	ENST00000515255		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000504592	ENST00000394730		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000504592	ENST00000515279		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000504592	ENST00000360505		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000504592	ENST00000394728		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000504592	ENST00000507281		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000322953	ENST00000515255		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000322953	ENST00000394730		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000322953	ENST00000515279		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000322953	ENST00000360505		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000322953	ENST00000394728		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000322953	ENST00000507281		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000428908	ENST00000515255		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000428908	ENST00000394730		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000428908	ENST00000515279		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000428908	ENST00000360505		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000428908	ENST00000394728		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000428908	ENST00000507281		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000508653	ENST00000515255		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000508653	ENST00000394730		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000508653	ENST00000515279		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000508653	ENST00000360505		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000508653	ENST00000394728		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000508653	ENST00000507281		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000444316	ENST00000515255		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000444316	ENST00000394730		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000444316	ENST00000515279		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000444316	ENST00000360505		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-3UTR	ENST00000444316	ENST00000394728		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
5CDS-intron	ENST00000444316	ENST00000507281		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000510950	ENST00000515255		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000510950	ENST00000394730		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000510950	ENST00000515279		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000510950	ENST00000360505		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-3UTR	ENST00000510950	ENST00000394728		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-intron	ENST00000510950	ENST00000507281		TCGA	RV	PRAD	TCGA-YL-A8S8-01A	BANK1	chr4	102965064	+	GSTCD	chr4	106744111	+
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7821-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000290902	ENST00000366794		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000290902	ENST00000490921		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000290902	ENST00000366792		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000290902	ENST00000366791		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000290902	ENST00000366790		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000431380	ENST00000366794		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000431380	ENST00000490921		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000431380	ENST00000366792		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000431380	ENST00000366791		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000431380	ENST00000366790		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
intron-intron	ENST00000400762	ENST00000366794		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
intron-intron	ENST00000400762	ENST00000490921		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
intron-intron	ENST00000400762	ENST00000366792		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
intron-intron	ENST00000400762	ENST00000366791		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
intron-intron	ENST00000400762	ENST00000366790		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	SPON2	chr4	1160725	-	PARP1	chr1	224102800	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A6AN-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000300150	ENST00000528170		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
intron-5UTR	ENST00000300150	ENST00000337911		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
intron-5UTR	ENST00000300150	ENST00000405633		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-intron	ENST00000337979	ENST00000528170		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-5UTR	ENST00000337979	ENST00000337911		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-5UTR	ENST00000337979	ENST00000405633		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-intron	ENST00000535361	ENST00000528170		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-5UTR	ENST00000535361	ENST00000337911		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-5UTR	ENST00000535361	ENST00000405633		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5UTR-intron	ENST00000437946	ENST00000528170		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5UTR-5UTR	ENST00000437946	ENST00000337911		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5UTR-5UTR	ENST00000437946	ENST00000405633		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-intron	ENST00000529177	ENST00000528170		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-5UTR	ENST00000529177	ENST00000337911		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5CDS-5UTR	ENST00000529177	ENST00000405633		TCGA	RV	PRAD	TCGA-HC-7209-01A	STX3	chr11	59523108	+	MS4A15	chr11	60535040	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VP-A87K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-intron	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-intron	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-intron	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-intron	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000341165	ENST00000359945		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000341165	ENST00000409122		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000341165	ENST00000409464		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000341165	ENST00000588805		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000422280	ENST00000359945		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000422280	ENST00000409122		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000422280	ENST00000409464		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000422280	ENST00000588805		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000542611	ENST00000359945		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000542611	ENST00000409122		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000542611	ENST00000409464		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000542611	ENST00000588805		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000590996	ENST00000359945		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000590996	ENST00000409122		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000590996	ENST00000409464		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000590996	ENST00000588805		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000389312	ENST00000359945		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000389312	ENST00000409122		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000389312	ENST00000409464		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000389312	ENST00000588805		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000589872	ENST00000359945		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000589872	ENST00000409122		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000589872	ENST00000409464		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
5CDS-intron	ENST00000589872	ENST00000588805		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	NBR1	chr17	41345655	+	C17orf104	chr17	42751344	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000325599	ENST00000498485		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000325599	ENST00000259457		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000325599	ENST00000536392		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000463369	ENST00000498485		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000463369	ENST00000259457		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000463369	ENST00000536392		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000468371	ENST00000498485		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000468371	ENST00000259457		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000468371	ENST00000536392		TCGA	RV	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897349	-	PSMB7	chr9	127146935	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000332149	ENST00000306376		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000332149	ENST00000434744		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000332149	ENST00000537818		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000480706		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000306376		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000434744		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000537818		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000480706		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000306376		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000434744		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000537818		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000480706		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000306376		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000434744		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000537818		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000480706		TCGA	RV	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	ETV5	chr3	185823731	-
intron-3CDS	ENST00000590550	ENST00000314167		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000590550	ENST00000511163		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-intron	ENST00000590550	ENST00000509566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000434436	ENST00000314167		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000434436	ENST00000511163		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-intron	ENST00000434436	ENST00000509566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
Frame-shit	ENST00000592012	ENST00000314167		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
Frame-shit	ENST00000592012	ENST00000511163		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
5CDS-intron	ENST00000592012	ENST00000509566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000156825	ENST00000314167		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000156825	ENST00000511163		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-intron	ENST00000156825	ENST00000509566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000585967	ENST00000314167		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-3CDS	ENST00000585967	ENST00000511163		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
intron-intron	ENST00000585967	ENST00000509566		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	MBD3	chr19	1592617	-	GAK	chr4	871597	-
In-frame	ENST00000281928	ENST00000419821		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
Frame-shit	ENST00000281928	ENST00000392533		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
Frame-shit	ENST00000281928	ENST00000537952		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5CDS-5UTR	ENST00000281928	ENST00000543709		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5CDS-5UTR	ENST00000281928	ENST00000536979		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5UTR-3CDS	ENST00000551197	ENST00000419821		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5UTR-3CDS	ENST00000551197	ENST00000392533		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5UTR-3CDS	ENST00000551197	ENST00000537952		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5UTR-5UTR	ENST00000551197	ENST00000543709		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5UTR-5UTR	ENST00000551197	ENST00000536979		TCGA	RV	PRAD	TCGA-YJ-A8SW-01A	MED13L	chr12	116675273	-	TAOK3	chr12	118588963	-
5CDS-3UTR	ENST00000301740	ENST00000483099		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SRRM2	chr16	2810500	+	SNRPE	chr1	203839005	+
5CDS-3UTR	ENST00000301740	ENST00000414487		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SRRM2	chr16	2810500	+	SNRPE	chr1	203839005	+
5CDS-3UTR	ENST00000301740	ENST00000367208		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SRRM2	chr16	2810500	+	SNRPE	chr1	203839005	+
intron-3UTR	ENST00000574593	ENST00000483099		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SRRM2	chr16	2810500	+	SNRPE	chr1	203839005	+
intron-3UTR	ENST00000574593	ENST00000414487		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SRRM2	chr16	2810500	+	SNRPE	chr1	203839005	+
intron-3UTR	ENST00000574593	ENST00000367208		TCGA	RV	PRAD	TCGA-V1-A8X3-01A	SRRM2	chr16	2810500	+	SNRPE	chr1	203839005	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5530-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000470422	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000470422	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000470422	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000470422	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000470422	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000470422	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000246043	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000246043	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000246043	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000246043	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000246043	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000246043	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377813	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377813	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377813	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000377813	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377813	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377813	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377807	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377807	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377807	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000377807	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377807	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377807	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000360807	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000360807	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000360807	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000360807	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000360807	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000360807	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000455029	ENST00000217246		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000455029	ENST00000310348		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000455029	ENST00000464883		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000455029	ENST00000402914		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000455029	ENST00000378058		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000455029	ENST00000407045		TCGA	RV	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17660644	-	MACROD2	chr20	15843390	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-7327-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7820-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-J4-A83N-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
Frame-shit	ENST00000371269	ENST00000591462		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
Frame-shit	ENST00000371269	ENST00000252455		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
Frame-shit	ENST00000371269	ENST00000412601		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
Frame-shit	ENST00000371269	ENST00000592741		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
Frame-shit	ENST00000371269	ENST00000587327		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
Frame-shit	ENST00000371269	ENST00000589838		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
5CDS-intron	ENST00000371269	ENST00000591510		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000537443	ENST00000591462		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000537443	ENST00000252455		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000537443	ENST00000412601		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000537443	ENST00000592741		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000537443	ENST00000587327		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000537443	ENST00000589838		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-intron	ENST00000537443	ENST00000591510		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000535035	ENST00000591462		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000535035	ENST00000252455		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000535035	ENST00000412601		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000535035	ENST00000592741		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000535035	ENST00000587327		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000535035	ENST00000589838		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-intron	ENST00000535035	ENST00000591510		TCGA	RV	PRAD	TCGA-VP-A872-01A	DHCR24	chr1	55315306	-	PRKCSH	chr19	11553201	+
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-7522-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000397661	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000397661	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000592199	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000592199	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000587760	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000587760	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000585575	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000585575	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000360105	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000360105	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000588228	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000588228	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000587260	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000587260	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000358552	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
5CDS-5UTR	ENST00000358552	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
intron-5UTR	ENST00000588680	ENST00000601953		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
intron-5UTR	ENST00000588680	ENST00000328867		TCGA	RV	PRAD	TCGA-HC-A4ZV-01A	NFIX	chr19	13192669	+	CAPN12	chr19	39233168	-
intron-5UTR	ENST00000460934	ENST00000535420		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000460934	ENST00000368426		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000460934	ENST00000487542		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
intron-3UTR	ENST00000460934	ENST00000417934		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
intron-5UTR	ENST00000460934	ENST00000292176		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000367145	ENST00000535420		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000367145	ENST00000368426		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000367145	ENST00000487542		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
5UTR-3UTR	ENST00000367145	ENST00000417934		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
5UTR-5UTR	ENST00000367145	ENST00000292176		TCGA	RV	PRAD	TCGA-FC-A5OB-01A	SLC45A3	chr1	205649522	-	ZBTB7B	chr1	154987131	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6332-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000335606	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000335606	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000335606	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000382072	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000382072	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000382072	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5UTR-3CDS	ENST00000514195	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5UTR-intron	ENST00000514195	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5UTR-3UTR	ENST00000514195	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
In-frame	ENST00000382085	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000382085	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000382085	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
In-frame	ENST00000502637	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000502637	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000502637	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000441713	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000441713	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000441713	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
In-frame	ENST00000426255	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000426255	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000426255	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
In-frame	ENST00000512079	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000512079	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000512079	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000382068	ENST00000296597		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-intron	ENST00000382068	ENST00000511107		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5CDS-3UTR	ENST00000382068	ENST00000512623		TCGA	RV	PRAD	TCGA-EJ-8474-01A	AMACR	chr5	33998746	-	NDUFAF2	chr5	60368952	+
5UTR-5UTR	ENST00000232125	ENST00000264474		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	FAM162A	chr3	122103146	+	CSTA	chr3	122044109	+
5UTR-5UTR	ENST00000232125	ENST00000479204		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	FAM162A	chr3	122103146	+	CSTA	chr3	122044109	+
5CDS-5UTR	ENST00000477892	ENST00000264474		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	FAM162A	chr3	122103146	+	CSTA	chr3	122044109	+
5CDS-5UTR	ENST00000477892	ENST00000479204		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	FAM162A	chr3	122103146	+	CSTA	chr3	122044109	+
5CDS-5UTR	ENST00000469967	ENST00000264474		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	FAM162A	chr3	122103146	+	CSTA	chr3	122044109	+
5CDS-5UTR	ENST00000469967	ENST00000479204		TCGA	RV	PRAD	TCGA-G9-A9S4-01A	FAM162A	chr3	122103146	+	CSTA	chr3	122044109	+
In-frame	ENST00000225719	ENST00000225983		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000225719	ENST00000393622		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000225719	ENST00000336057		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000225719	ENST00000586802		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000543464	ENST00000225983		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000543464	ENST00000393622		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000543464	ENST00000336057		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000543464	ENST00000586802		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000584051	ENST00000225983		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000584051	ENST00000393622		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000584051	ENST00000336057		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
intron-3CDS	ENST00000584051	ENST00000586802		TCGA	RV	PRAD	TCGA-J4-A67T-01A	CPD	chr17	28712254	+	HDAC5	chr17	42171202	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000549920	ENST00000374690		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000549920	ENST00000513847		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000549920	ENST00000504326		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000549920	ENST00000396044		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000549920	ENST00000396043		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000550645	ENST00000374690		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000550645	ENST00000513847		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000550645	ENST00000504326		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000550645	ENST00000396044		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000550645	ENST00000396043		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000552588	ENST00000374690		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000552588	ENST00000513847		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000552588	ENST00000504326		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000552588	ENST00000396044		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
5CDS-intron	ENST00000552588	ENST00000396043		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
intron-intron	ENST00000549273	ENST00000374690		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
intron-intron	ENST00000549273	ENST00000513847		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
intron-intron	ENST00000549273	ENST00000504326		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
intron-intron	ENST00000549273	ENST00000396044		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
intron-intron	ENST00000549273	ENST00000396043		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	RPL18	chr19	49118588	-	AR	chrX	66914515	+
In-frame	ENST00000406606	ENST00000356083		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
5CDS-intron	ENST00000406606	ENST00000477421		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
In-frame	ENST00000371850	ENST00000356083		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
5CDS-intron	ENST00000371850	ENST00000477421		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
In-frame	ENST00000371851	ENST00000356083		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
5CDS-intron	ENST00000371851	ENST00000477421		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
5UTR-3CDS	ENST00000486113	ENST00000356083		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
5UTR-intron	ENST00000486113	ENST00000477421		TCGA	RV	PRAD	TCGA-XQ-A8TA-01A	VAV2	chr9	136804225	-	COL27A1	chr9	117047004	+
Frame-shit	ENST00000332149	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5CDS-5UTR	ENST00000332149	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5CDS-5UTR	ENST00000398585	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000458356	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5CDS-5UTR	ENST00000458356	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000497881	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000497881	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-7788-01A	TMPRSS2	chr21	42870046	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000272102	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
5UTR-intron	ENST00000272102	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
5UTR-3CDS	ENST00000540651	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
5UTR-intron	ENST00000540651	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
3UTR-3CDS	ENST00000478424	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
3UTR-intron	ENST00000478424	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
intron-3CDS	ENST00000541182	ENST00000297185		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
intron-intron	ENST00000541182	ENST00000501917		TCGA	RV	PRAD	TCGA-KK-A6E1-01A	ARF1	chr1	228270466	+	HSPA9	chr5	137904738	-
In-frame	ENST00000323116	ENST00000380525		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
In-frame	ENST00000323116	ENST00000397111		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
In-frame	ENST00000323116	ENST00000278224		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
5CDS-5UTR	ENST00000323116	ENST00000470221		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
5CDS-5UTR	ENST00000323116	ENST00000401769		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
5CDS-5UTR	ENST00000323116	ENST00000397114		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
intron-3CDS	ENST00000493826	ENST00000380525		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
intron-3CDS	ENST00000493826	ENST00000397111		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
intron-3CDS	ENST00000493826	ENST00000278224		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
intron-5UTR	ENST00000493826	ENST00000470221		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
intron-5UTR	ENST00000493826	ENST00000401769		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
intron-5UTR	ENST00000493826	ENST00000397114		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
3UTR-3CDS	ENST00000482794	ENST00000380525		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
3UTR-3CDS	ENST00000482794	ENST00000397111		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
3UTR-3CDS	ENST00000482794	ENST00000278224		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
3UTR-5UTR	ENST00000482794	ENST00000470221		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
3UTR-5UTR	ENST00000482794	ENST00000401769		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
3UTR-5UTR	ENST00000482794	ENST00000397114		TCGA	RV	PRAD	TCGA-EJ-5507-01A	ATP11B	chr3	182563310	+	CARS	chr11	3026663	-
Frame-shit	ENST00000420713	ENST00000297001		TCGA	RV	PRAD	TCGA-J9-A8CP-01A	ZNF716	chr7	57510033	+	C7orf72	chr7	50191046	+
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-EJ-5502-01A	TMPRSS2	chr21	42860321	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000332149	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5CDS-5UTR	ENST00000398585	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000458356	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000430479		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000399357		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000420159		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000343495		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000242066		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000405192		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000405358		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000403527		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000405218		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000403685		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000497881	ENST00000476720		TCGA	RV	PRAD	TCGA-EJ-5501-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
In-frame	ENST00000332149	ENST00000234677		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
In-frame	ENST00000332149	ENST00000369923		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
5CDS-intron	ENST00000332149	ENST00000468588		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
In-frame	ENST00000398585	ENST00000234677		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
In-frame	ENST00000398585	ENST00000369923		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
5CDS-intron	ENST00000398585	ENST00000468588		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
Frame-shit	ENST00000458356	ENST00000234677		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
Frame-shit	ENST00000458356	ENST00000369923		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
5CDS-intron	ENST00000458356	ENST00000468588		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
intron-3CDS	ENST00000497881	ENST00000234677		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
intron-3CDS	ENST00000497881	ENST00000369923		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
intron-intron	ENST00000497881	ENST00000468588		TCGA	RV	PRAD	TCGA-EJ-8474-01A	TMPRSS2	chr21	42860321	-	SARS	chr1	109766600	+
In-frame	ENST00000399782	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5CDS-intron	ENST00000399782	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
In-frame	ENST00000317582	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5CDS-intron	ENST00000317582	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5UTR-3CDS	ENST00000543133	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5UTR-intron	ENST00000543133	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
Frame-shit	ENST00000538149	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5CDS-intron	ENST00000538149	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5UTR-3CDS	ENST00000337612	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5UTR-intron	ENST00000337612	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
In-frame	ENST00000493680	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5CDS-intron	ENST00000493680	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
In-frame	ENST00000355028	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5CDS-intron	ENST00000355028	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
In-frame	ENST00000418951	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
5CDS-intron	ENST00000418951	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
intron-3CDS	ENST00000485631	ENST00000400588		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
intron-intron	ENST00000485631	ENST00000523144		TCGA	RV	PRAD	TCGA-HI-7168-01A	BCL2L13	chr22	18138598	+	GAB4	chr22	17446158	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-VN-A88L-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000545643	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
In-frame	ENST00000545643	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000545643	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000545643	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000545643	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000537760	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000537760	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000537760	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000537760	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000537760	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000414023	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000414023	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000414023	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000414023	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000414023	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000529237	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000529237	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000529237	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000529237	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000529237	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
In-frame	ENST00000256196	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
In-frame	ENST00000256196	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000256196	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000256196	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000256196	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000534746	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000534746	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000534746	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000534746	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000534746	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000526063	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000526063	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000526063	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000526063	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000526063	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000532814	ENST00000476844		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000532814	ENST00000492590		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000532814	ENST00000466788		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000532814	ENST00000468189		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000532814	ENST00000341848		TCGA	RV	PRAD	TCGA-KK-A7B3-01A	RRAS2	chr11	14380309	-	FHIT	chr3	59908140	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-A76X-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-5UTR	ENST00000315596	ENST00000215939		TCGA	RV	PRAD	TCGA-KK-A8IJ-01A	PDS5B	chr13	33160730	+	CRYBB1	chr22	27012302	-
Frame-shit	ENST00000398645	ENST00000346672		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
Frame-shit	ENST00000398645	ENST00000360962		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-intron	ENST00000398645	ENST00000527634		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-intron	ENST00000398645	ENST00000540737		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-5UTR	ENST00000398645	ENST00000532565		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-5UTR	ENST00000398645	ENST00000525449		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-3UTR	ENST00000398645	ENST00000527368		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
Frame-shit	ENST00000529006	ENST00000346672		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
Frame-shit	ENST00000529006	ENST00000360962		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-intron	ENST00000529006	ENST00000527634		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-intron	ENST00000529006	ENST00000540737		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-5UTR	ENST00000529006	ENST00000532565		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-5UTR	ENST00000529006	ENST00000525449		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
5CDS-3UTR	ENST00000529006	ENST00000527368		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3CDS	ENST00000526258	ENST00000346672		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3CDS	ENST00000526258	ENST00000360962		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-intron	ENST00000526258	ENST00000527634		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-intron	ENST00000526258	ENST00000540737		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-5UTR	ENST00000526258	ENST00000532565		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-5UTR	ENST00000526258	ENST00000525449		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3UTR	ENST00000526258	ENST00000527368		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3CDS	ENST00000308783	ENST00000346672		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3CDS	ENST00000308783	ENST00000360962		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-intron	ENST00000308783	ENST00000527634		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-intron	ENST00000308783	ENST00000540737		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-5UTR	ENST00000308783	ENST00000532565		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-5UTR	ENST00000308783	ENST00000525449		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3UTR	ENST00000308783	ENST00000527368		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3CDS	ENST00000530342	ENST00000346672		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3CDS	ENST00000530342	ENST00000360962		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-intron	ENST00000530342	ENST00000527634		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-intron	ENST00000530342	ENST00000540737		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-5UTR	ENST00000530342	ENST00000532565		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-5UTR	ENST00000530342	ENST00000525449		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
intron-3UTR	ENST00000530342	ENST00000527368		TCGA	RV	PRAD	TCGA-EJ-A46G-01A	KDM2A	chr11	66888829	+	C11orf80	chr11	66555631	+
Frame-shit	ENST00000453744	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000453744	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000453744	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000453744	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000453744	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000453744	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394801	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394801	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394801	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394801	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394801	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000394801	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394803	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394803	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394803	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394803	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
Frame-shit	ENST00000394803	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000394803	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000394804	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000394804	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000394804	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000394804	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000394804	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000394804	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000343106	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000343106	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000343106	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000343106	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000343106	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000343106	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000321805	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000321805	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000321805	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000321805	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000321805	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000321805	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000350435	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000350435	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000350435	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000350435	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000350435	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-5UTR	ENST00000350435	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000338145	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000338145	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000338145	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000338145	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000338145	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000338145	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000349311	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000349311	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000349311	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000349311	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
In-frame	ENST00000349311	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-5UTR	ENST00000349311	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000504211	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000504211	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000504211	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000504211	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000504211	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-5UTR	ENST00000504211	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000357194	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000357194	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000357194	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000357194	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000357194	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-5UTR	ENST00000357194	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000505207	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000505207	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000505207	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000505207	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000505207	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-5UTR	ENST00000505207	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000507845	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000507845	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000507845	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000507845	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000507845	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-5UTR	ENST00000507845	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000502404	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000502404	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000502404	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000502404	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-3CDS	ENST00000502404	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
intron-5UTR	ENST00000502404	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5UTR-3CDS	ENST00000513098	ENST00000570565		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5UTR-3CDS	ENST00000513098	ENST00000442502		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5UTR-3CDS	ENST00000513098	ENST00000340813		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5UTR-3CDS	ENST00000513098	ENST00000451037		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5UTR-3CDS	ENST00000513098	ENST00000285273		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5UTR-5UTR	ENST00000513098	ENST00000571918		TCGA	RV	PRAD	TCGA-EJ-7781-01A	UBE2D3	chr4	103747642	-	CA10	chr17	49726615	-
5CDS-intron	ENST00000358559	ENST00000257497		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000358559	ENST00000376911		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000358559	ENST00000491192		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000474170	ENST00000257497		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000474170	ENST00000376911		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
intron-intron	ENST00000474170	ENST00000491192		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000298239	ENST00000257497		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000298239	ENST00000376911		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
5CDS-intron	ENST00000298239	ENST00000491192		TCGA	RV	PRAD	TCGA-HC-8260-01A	MSMB	chr10	51562511	+	ANXA1	chr9	75772570	+
In-frame	ENST00000391976	ENST00000297784		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000391976	ENST00000340019		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000391976	ENST00000396237		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
5CDS-3UTR	ENST00000391976	ENST00000486417		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000310931	ENST00000297784		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000310931	ENST00000340019		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000310931	ENST00000396237		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
5CDS-3UTR	ENST00000310931	ENST00000486417		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
Frame-shit	ENST00000391975	ENST00000297784		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
Frame-shit	ENST00000391975	ENST00000340019		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
Frame-shit	ENST00000391975	ENST00000396237		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
5CDS-3UTR	ENST00000391975	ENST00000486417		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000427183	ENST00000297784		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000427183	ENST00000340019		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000427183	ENST00000396237		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
5CDS-3UTR	ENST00000427183	ENST00000486417		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
intron-3CDS	ENST00000476807	ENST00000297784		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
intron-3CDS	ENST00000476807	ENST00000340019		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
intron-3CDS	ENST00000476807	ENST00000396237		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
intron-3UTR	ENST00000476807	ENST00000486417		TCGA	RV	PRAD	TCGA-HC-A631-01A	HDLBP	chr2	242186471	-	TMC1	chr9	75445367	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-CH-5741-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-YL-A8SF-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000332149	ENST00000430479		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000399357		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000420159		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000343495		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000242066		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000405192		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000405358		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000403527		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000405218		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000332149	ENST00000403685		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000332149	ENST00000476720		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000430479		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000399357		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000420159		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000343495		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000242066		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405192		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405358		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000403527		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000405218		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000398585	ENST00000403685		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5CDS-5UTR	ENST00000398585	ENST00000476720		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000430479		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000399357		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000420159		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000343495		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000242066		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000405192		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000405358		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000403527		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000405218		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000458356	ENST00000403685		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000458356	ENST00000476720		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000430479		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000399357		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000420159		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000343495		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000242066		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000405192		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000405358		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000403527		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000405218		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000497881	ENST00000403685		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000497881	ENST00000476720		TCGA	RV	PRAD	TCGA-YL-A8SC-01A	TMPRSS2	chr21	42879877	-	ETV1	chr7	13978871	-
5CDS-5UTR	ENST00000336375	ENST00000505330		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000504381		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000507488		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000393221		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000533801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000510168		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000508532		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000504948		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000513801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000328560		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000428331		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000359644		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000336375	ENST00000422190		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-intron	ENST00000336375	ENST00000509150		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000505330		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000504381		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000507488		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000393221		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000533801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000510168		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000508532		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000504948		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000513801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000328560		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000428331		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000359644		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000475741	ENST00000422190		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-intron	ENST00000475741	ENST00000509150		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000505330		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000504381		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000507488		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000393221		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000533801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000510168		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000508532		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000504948		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000513801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000328560		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000428331		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000359644		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-5UTR	ENST00000351273	ENST00000422190		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5CDS-intron	ENST00000351273	ENST00000509150		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000505330		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000504381		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000507488		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000393221		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000533801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000510168		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000508532		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000504948		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000513801		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000328560		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000428331		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000359644		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-5UTR	ENST00000489084	ENST00000422190		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
3UTR-intron	ENST00000489084	ENST00000509150		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	ACPP	chr3	132036420	+	ATP2C1	chr3	130649260	+
5UTR-3CDS	ENST00000327492	ENST00000259873		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-3CDS	ENST00000327492	ENST00000506373		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-3UTR	ENST00000327492	ENST00000472229		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000454427		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000477010		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000437247		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000430402		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000489289		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000418070		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000426945		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000468755		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000412843		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000327800		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000469397		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000400594		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000451032		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000493769		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000440992		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000412451		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000428224		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
5UTR-intron	ENST00000327492	ENST00000472444		TCGA	RV	PRAD	TCGA-2A-A8W1-01A	TOB2	chr22	41842383	-	MRPS18B	chr6	30592660	+
Frame-shit	ENST00000264657	ENST00000319349		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000264657	ENST00000393664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000264657	ENST00000538265		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000264657	ENST00000545954		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000264657	ENST00000545089		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000264657	ENST00000591713		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
5CDS-intron	ENST00000264657	ENST00000586826		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-3CDS	ENST00000585517	ENST00000319349		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-3CDS	ENST00000585517	ENST00000393664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-3CDS	ENST00000585517	ENST00000538265		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-3CDS	ENST00000585517	ENST00000545954		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-3CDS	ENST00000585517	ENST00000545089		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-3CDS	ENST00000585517	ENST00000591713		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
3UTR-intron	ENST00000585517	ENST00000586826		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000389272	ENST00000319349		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000389272	ENST00000393664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000389272	ENST00000538265		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000389272	ENST00000545954		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000389272	ENST00000545089		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000389272	ENST00000591713		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
5CDS-intron	ENST00000389272	ENST00000586826		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000588969	ENST00000319349		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000588969	ENST00000393664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000588969	ENST00000538265		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000588969	ENST00000545954		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000588969	ENST00000545089		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000588969	ENST00000591713		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
5CDS-intron	ENST00000588969	ENST00000586826		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000404395	ENST00000319349		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000404395	ENST00000393664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000404395	ENST00000538265		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000404395	ENST00000545954		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000404395	ENST00000545089		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
Frame-shit	ENST00000404395	ENST00000591713		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
5CDS-intron	ENST00000404395	ENST00000586826		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-3CDS	ENST00000590776	ENST00000319349		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-3CDS	ENST00000590776	ENST00000393664		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-3CDS	ENST00000590776	ENST00000538265		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-3CDS	ENST00000590776	ENST00000545954		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-3CDS	ENST00000590776	ENST00000545089		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-3CDS	ENST00000590776	ENST00000591713		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
intron-intron	ENST00000590776	ENST00000586826		TCGA	RV	PRAD	TCGA-EJ-5511-01A	STAT3	chr17	40468807	-	ETV4	chr17	41611353	-
5CDS-intron	ENST00000434581	ENST00000521601		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
5CDS-intron	ENST00000434581	ENST00000351513		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000334667	ENST00000521601		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000334667	ENST00000351513		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000519784	ENST00000521601		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000519784	ENST00000351513		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000523073	ENST00000521601		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000523073	ENST00000351513		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000521229	ENST00000521601		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000521229	ENST00000351513		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000522576	ENST00000521601		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
intron-intron	ENST00000522576	ENST00000351513		TCGA	RV	PRAD	TCGA-FC-A4JI-01A	TMEM68	chr8	56656040	-	DPYS	chr8	105436617	-
In-frame	ENST00000284878	ENST00000346798		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000354192		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000348990		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000357903		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000358918		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000359726		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000448388		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000440126		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000284878	ENST00000439274		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-5UTR	ENST00000284878	ENST00000474136		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000346798		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000354192		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000348990		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000357903		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000358918		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000359726		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000448388		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000440126		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400166	ENST00000439274		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-5UTR	ENST00000400166	ENST00000474136		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000346798		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000354192		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000348990		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000357903		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000358918		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000359726		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000448388		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000440126		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000356275	ENST00000439274		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-5UTR	ENST00000356275	ENST00000474136		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000346798		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000354192		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000348990		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000357903		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000358918		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000359726		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000448388		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000440126		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400165	ENST00000439274		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-5UTR	ENST00000400165	ENST00000474136		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000346798		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000354192		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000348990		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000357903		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000358918		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000359726		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000448388		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000440126		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000306618	ENST00000439274		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-5UTR	ENST00000306618	ENST00000474136		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000346798		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000354192		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000348990		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000357903		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000358918		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000359726		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000448388		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000440126		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
In-frame	ENST00000400169	ENST00000439274		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-5UTR	ENST00000400169	ENST00000474136		TCGA	RV	PRAD	TCGA-CH-5792-01A	CXADR	chr21	18885490	+	APP	chr21	27425664	-
5CDS-3UTR	ENST00000242152	ENST00000318789		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000242152	ENST00000475937		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000493089		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000484350		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000318779		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000491238		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000498215		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000468577		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000242152	ENST00000472382		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000407573	ENST00000318789		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000407573	ENST00000475937		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000493089		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000484350		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000318779		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000491238		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000498215		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000468577		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000407573	ENST00000472382		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000405982	ENST00000318789		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000405982	ENST00000475937		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000493089		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000484350		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000318779		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000491238		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000498215		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000468577		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000405982	ENST00000472382		TCGA	RV	PRAD	TCGA-G9-6354-01A	NPY	chr7	24331484	+	FOXP1	chr3	71007472	-
Frame-shit	ENST00000358559	ENST00000326003		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000597483		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000593997		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000595952		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000360617		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-3CDS	ENST00000474170	ENST00000326003		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000597483		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000593997		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000595952		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000360617		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
In-frame	ENST00000298239	ENST00000326003		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000597483		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000593997		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000595952		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000360617		TCGA	RV	PRAD	TCGA-J9-A52B-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
intron-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-2A-AAYU-01A	TMPRSS2	chr21	42866283	-	ERG	chr21	39817544	-
Frame-shit	ENST00000358559	ENST00000326003		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000597483		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000593997		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000595952		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000358559	ENST00000360617		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-3CDS	ENST00000474170	ENST00000326003		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000597483		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000593997		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000595952		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-intron	ENST00000474170	ENST00000360617		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
In-frame	ENST00000298239	ENST00000326003		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000597483		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000593997		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000595952		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
5CDS-intron	ENST00000298239	ENST00000360617		TCGA	RV	PRAD	TCGA-J4-A67O-01A	MSMB	chr10	51562517	+	KLK3	chr19	51361285	+
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	RV	PRAD	TCGA-HC-7748-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000399312		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000332149	ENST00000482679		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
Frame-shit	ENST00000398585	ENST00000399312		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000398585	ENST00000482679		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
Frame-shit	ENST00000458356	ENST00000399312		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000458356	ENST00000482679		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
intron-3CDS	ENST00000497881	ENST00000399312		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
intron-3UTR	ENST00000497881	ENST00000482679		TCGA	RV	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42845252	-	MRPS6	chr21	35497641	+
Frame-shit	ENST00000341744	ENST00000319349		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
Frame-shit	ENST00000341744	ENST00000393664		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
Frame-shit	ENST00000341744	ENST00000538265		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
Frame-shit	ENST00000341744	ENST00000545954		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
Frame-shit	ENST00000341744	ENST00000545089		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
Frame-shit	ENST00000341744	ENST00000591713		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
5CDS-intron	ENST00000341744	ENST00000586826		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395816	ENST00000319349		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395816	ENST00000393664		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395816	ENST00000538265		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395816	ENST00000545954		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395816	ENST00000545089		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395816	ENST00000591713		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-intron	ENST00000395816	ENST00000586826		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000347215	ENST00000319349		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000347215	ENST00000393664		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000347215	ENST00000538265		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000347215	ENST00000545954		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000347215	ENST00000545089		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000347215	ENST00000591713		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-intron	ENST00000347215	ENST00000586826		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000265626	ENST00000319349		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000265626	ENST00000393664		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000265626	ENST00000538265		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000265626	ENST00000545954		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000265626	ENST00000545089		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000265626	ENST00000591713		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-intron	ENST00000265626	ENST00000586826		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395814	ENST00000319349		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395814	ENST00000393664		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395814	ENST00000538265		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395814	ENST00000545954		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395814	ENST00000545089		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000395814	ENST00000591713		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-intron	ENST00000395814	ENST00000586826		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000472841	ENST00000319349		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000472841	ENST00000393664		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000472841	ENST00000538265		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000472841	ENST00000545954		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000472841	ENST00000545089		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-3CDS	ENST00000472841	ENST00000591713		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
intron-intron	ENST00000472841	ENST00000586826		TCGA	RV	PRAD	TCGA-CH-5762-01A	PMEPA1	chr20	56284530	-	ETV4	chr17	41613847	-
Frame-shit	ENST00000268489	ENST00000521662		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
In-frame	ENST00000268489	ENST00000521688		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000268489	ENST00000520147		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000268489	ENST00000522407		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
Frame-shit	ENST00000397992	ENST00000521662		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
In-frame	ENST00000397992	ENST00000521688		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000397992	ENST00000520147		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000397992	ENST00000522407		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
intron-3CDS	ENST00000558842	ENST00000521662		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
intron-3CDS	ENST00000558842	ENST00000521688		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
intron-3UTR	ENST00000558842	ENST00000520147		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
intron-3UTR	ENST00000558842	ENST00000522407		TCGA	RV	PRAD	TCGA-YL-A9WL-01A	ZFHX3	chr16	72845476	-	ENY2	chr8	110355634	+
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-V1-A9O9-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-5UTR	ENST00000464356	ENST00000367990		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000464356	ENST00000468465		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-intron	ENST00000464356	ENST00000463812		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000464356	ENST00000470459		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000464356	ENST00000464492		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-intron	ENST00000464356	ENST00000491350		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000348159	ENST00000367990		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000348159	ENST00000468465		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000348159	ENST00000463812		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000348159	ENST00000470459		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000348159	ENST00000464492		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000348159	ENST00000491350		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000353795	ENST00000367990		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000353795	ENST00000468465		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000353795	ENST00000463812		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000353795	ENST00000470459		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000353795	ENST00000464492		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000353795	ENST00000491350		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000340875	ENST00000367990		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000340875	ENST00000468465		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000340875	ENST00000463812		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000340875	ENST00000470459		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000340875	ENST00000464492		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000340875	ENST00000491350		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000368240	ENST00000367990		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000368240	ENST00000468465		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000368240	ENST00000463812		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000368240	ENST00000470459		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-5UTR	ENST00000368240	ENST00000464492		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5UTR-intron	ENST00000368240	ENST00000491350		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000360595	ENST00000367990		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000360595	ENST00000468465		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-intron	ENST00000360595	ENST00000463812		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000360595	ENST00000470459		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-5UTR	ENST00000360595	ENST00000464492		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
intron-intron	ENST00000360595	ENST00000491350		TCGA	RV	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	APOA2	chr1	161193215	-
5CDS-intron	ENST00000358559	ENST00000216297		TCGA	RV	PRAD	TCGA-HC-8262-01A	MSMB	chr10	51562517	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000358559	ENST00000555943		TCGA	RV	PRAD	TCGA-HC-8262-01A	MSMB	chr10	51562517	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000474170	ENST00000216297		TCGA	RV	PRAD	TCGA-HC-8262-01A	MSMB	chr10	51562517	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000474170	ENST00000555943		TCGA	RV	PRAD	TCGA-HC-8262-01A	MSMB	chr10	51562517	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000298239	ENST00000216297		TCGA	RV	PRAD	TCGA-HC-8262-01A	MSMB	chr10	51562517	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000298239	ENST00000555943		TCGA	RV	PRAD	TCGA-HC-8262-01A	MSMB	chr10	51562517	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000242152	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6333-01A	NPY	chr7	24331484	+	DDX21	chr10	70723858	+
intron-intron	ENST00000407573	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6333-01A	NPY	chr7	24331484	+	DDX21	chr10	70723858	+
intron-intron	ENST00000405982	ENST00000354185		TCGA	RV	PRAD	TCGA-G9-6333-01A	NPY	chr7	24331484	+	DDX21	chr10	70723858	+
Frame-shit	ENST00000481110	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
Frame-shit	ENST00000481110	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000481110	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000481110	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000440486	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000440486	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000440486	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000440486	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000412135	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000412135	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000412135	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000412135	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000340107	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000340107	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000340107	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000340107	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000260795	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000260795	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000260795	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000260795	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000352904	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000352904	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000352904	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
5CDS-5UTR	ENST00000352904	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
intron-3CDS	ENST00000474521	ENST00000221561		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
intron-3CDS	ENST00000474521	ENST00000327141		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
intron-5UTR	ENST00000474521	ENST00000592330		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
intron-5UTR	ENST00000474521	ENST00000586839		TCGA	RV	PRAD	TCGA-EJ-A7NM-01A	FGFR3	chr4	1808661	+	AES	chr19	3061255	-
In-frame	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-G9-6329-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000560883	ENST00000357037		TCGA	RV	PRAD	TCGA-EJ-5511-01A	TM2D3	chr15	102190207	-	PTRF	chr17	40557406	-
In-frame	ENST00000428002	ENST00000357037		TCGA	RV	PRAD	TCGA-EJ-5511-01A	TM2D3	chr15	102190207	-	PTRF	chr17	40557406	-
In-frame	ENST00000559107	ENST00000357037		TCGA	RV	PRAD	TCGA-EJ-5511-01A	TM2D3	chr15	102190207	-	PTRF	chr17	40557406	-
In-frame	ENST00000347970	ENST00000357037		TCGA	RV	PRAD	TCGA-EJ-5511-01A	TM2D3	chr15	102190207	-	PTRF	chr17	40557406	-
In-frame	ENST00000333202	ENST00000357037		TCGA	RV	PRAD	TCGA-EJ-5511-01A	TM2D3	chr15	102190207	-	PTRF	chr17	40557406	-
In-frame	ENST00000561373	ENST00000357037		TCGA	RV	PRAD	TCGA-EJ-5511-01A	TM2D3	chr15	102190207	-	PTRF	chr17	40557406	-
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-3CDS	ENST00000460934	ENST00000399357		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000420159		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000343495		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000242066		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000405192		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000405358		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000403527		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000405218		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-intron	ENST00000460934	ENST00000403685		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-3CDS	ENST00000367145	ENST00000399357		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000420159		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000343495		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000242066		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000405192		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000405358		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000403527		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000405218		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000367145	ENST00000403685		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	RV	PRAD	TCGA-J4-A83M-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	14017105	-
In-frame	ENST00000336375	ENST00000252542		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
5CDS-intron	ENST00000336375	ENST00000591310		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
In-frame	ENST00000475741	ENST00000252542		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
5CDS-intron	ENST00000475741	ENST00000591310		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
In-frame	ENST00000351273	ENST00000252542		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
5CDS-intron	ENST00000351273	ENST00000591310		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
3UTR-3CDS	ENST00000489084	ENST00000252542		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
3UTR-intron	ENST00000489084	ENST00000591310		TCGA	RV	PRAD	TCGA-HC-7233-01A	ACPP	chr3	132036420	+	SAFB2	chr19	5616346	-
Frame-shit	ENST00000332149	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000332149	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000332149	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
Frame-shit	ENST00000398585	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000398585	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
In-frame	ENST00000458356	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
In-frame	ENST00000458356	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
In-frame	ENST00000458356	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000458356	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	RV	PRAD	TCGA-XJ-A83F-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39795483	-
5CDS-5UTR	ENST00000332149	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000319349		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000393664		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000538265		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000545954		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	RV	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42870046	-	ETV4	chr17	41623036	-
Frame-shit	ENST00000332149	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000332149	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000332149	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000398585	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000398585	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
Frame-shit	ENST00000458356	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000458356	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-3CDS	ENST00000497881	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
intron-5UTR	ENST00000497881	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42866283	-	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000325321	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000325321	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-intron	ENST00000325321	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-5UTR	ENST00000391810	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-5UTR	ENST00000391810	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-intron	ENST00000391810	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000358049	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000358049	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-intron	ENST00000358049	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-5UTR	ENST00000597509	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-5UTR	ENST00000597509	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-intron	ENST00000597509	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000399357		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000420159		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000343495		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000242066		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405192		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405358		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403527		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405218		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403685		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000399357		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000420159		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000343495		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000242066		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405192		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405358		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403527		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405218		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403685		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	RV	PRAD	TCGA-KK-A7AP-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
Frame-shit	ENST00000332149	ENST00000261168		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000332149	ENST00000543189		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000332149	ENST00000536444		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000332149	ENST00000544627		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5CDS-3UTR	ENST00000332149	ENST00000541654		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5CDS-3UTR	ENST00000332149	ENST00000540793		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000398585	ENST00000261168		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000398585	ENST00000543189		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000398585	ENST00000536444		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000398585	ENST00000544627		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5CDS-3UTR	ENST00000398585	ENST00000541654		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5CDS-3UTR	ENST00000398585	ENST00000540793		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000458356	ENST00000261168		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000458356	ENST00000543189		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000458356	ENST00000536444		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
Frame-shit	ENST00000458356	ENST00000544627		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5CDS-3UTR	ENST00000458356	ENST00000541654		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5CDS-3UTR	ENST00000458356	ENST00000540793		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5UTR-3CDS	ENST00000497881	ENST00000261168		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5UTR-3CDS	ENST00000497881	ENST00000543189		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5UTR-3CDS	ENST00000497881	ENST00000536444		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5UTR-3CDS	ENST00000497881	ENST00000544627		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5UTR-3UTR	ENST00000497881	ENST00000541654		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
5UTR-3UTR	ENST00000497881	ENST00000540793		TCGA	RV	PRAD	TCGA-EJ-7784-01A	TMPRSS2	chr21	42870046	-	ATF7IP	chr12	14613429	+
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000399357		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000420159		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000343495		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000242066		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405192		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405358		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403527		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405218		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403685		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	RV	PRAD	TCGA-HC-A8CY-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000429054	ENST00000512215		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-3CDS	ENST00000429054	ENST00000394854		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-3CDS	ENST00000429054	ENST00000323055		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-3CDS	ENST00000429054	ENST00000394853		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-intron	ENST00000429054	ENST00000507176		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-intron	ENST00000429054	ENST00000523694		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-intron	ENST00000429054	ENST00000510292		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000259939	ENST00000512215		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000259939	ENST00000394854		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000259939	ENST00000323055		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
Frame-shit	ENST00000259939	ENST00000394853		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
5CDS-intron	ENST00000259939	ENST00000507176		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
5CDS-intron	ENST00000259939	ENST00000523694		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
5CDS-intron	ENST00000259939	ENST00000510292		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-3CDS	ENST00000486622	ENST00000512215		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-3CDS	ENST00000486622	ENST00000394854		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-3CDS	ENST00000486622	ENST00000323055		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-3CDS	ENST00000486622	ENST00000394853		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-intron	ENST00000486622	ENST00000507176		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-intron	ENST00000486622	ENST00000523694		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
3UTR-intron	ENST00000486622	ENST00000510292		TCGA	RV	PRAD	TCGA-HC-7209-01A	RNF144B	chr6	18399930	+	PPP3CA	chr4	102117273	-
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000399357		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000420159		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000343495		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000242066		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405192		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405358		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403527		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000405218		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000460934	ENST00000403685		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000399357		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000420159		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000343495		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000242066		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405192		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405358		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403527		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000405218		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-3CDS	ENST00000367145	ENST00000403685		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	RV	PRAD	TCGA-2A-A8W3-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13978871	-
intron-3CDS	ENST00000400520	ENST00000343411		TCGA	RV	PRAD	TCGA-G9-7525-01A	PLA2G2A	chr1	20301931	-	MBTPS1	chr16	84103643	-
intron-intron	ENST00000400520	ENST00000569770		TCGA	RV	PRAD	TCGA-G9-7525-01A	PLA2G2A	chr1	20301931	-	MBTPS1	chr16	84103643	-
In-frame	ENST00000496748	ENST00000343411		TCGA	RV	PRAD	TCGA-G9-7525-01A	PLA2G2A	chr1	20301931	-	MBTPS1	chr16	84103643	-
5CDS-intron	ENST00000496748	ENST00000569770		TCGA	RV	PRAD	TCGA-G9-7525-01A	PLA2G2A	chr1	20301931	-	MBTPS1	chr16	84103643	-
Frame-shit	ENST00000375111	ENST00000343411		TCGA	RV	PRAD	TCGA-G9-7525-01A	PLA2G2A	chr1	20301931	-	MBTPS1	chr16	84103643	-
5CDS-intron	ENST00000375111	ENST00000569770		TCGA	RV	PRAD	TCGA-G9-7525-01A	PLA2G2A	chr1	20301931	-	MBTPS1	chr16	84103643	-
5CDS-5UTR	ENST00000332149	ENST00000306376		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000332149	ENST00000434744		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000332149	ENST00000537818		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000480706		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000306376		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000434744		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000537818		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000480706		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000306376		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000434744		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000537818		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000480706		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000306376		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000434744		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000537818		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000480706		TCGA	RV	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	ETV5	chr3	185823731	-
Frame-shit	ENST00000325321	ENST00000430479		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000399357		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000420159		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000343495		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000242066		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000405192		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000405358		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000403527		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000405218		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000325321	ENST00000403685		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000325321	ENST00000476720		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000430479		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000399357		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000420159		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000343495		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000242066		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000405192		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000405358		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000403527		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000405218		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-3CDS	ENST00000391810	ENST00000403685		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5UTR-5UTR	ENST00000391810	ENST00000476720		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000430479		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000399357		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000420159		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000343495		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000242066		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000405192		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000405358		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000403527		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000405218		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
Frame-shit	ENST00000358049	ENST00000403685		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000358049	ENST00000476720		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000430479		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000399357		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000420159		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000343495		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000242066		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000405192		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000405358		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000403527		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000405218		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000597509	ENST00000403685		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
intron-5UTR	ENST00000597509	ENST00000476720		TCGA	RV	PRAD	TCGA-ZG-A9LY-01A	KLK2	chr19	51376775	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000325321	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000325321	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-intron	ENST00000325321	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-5UTR	ENST00000391810	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-5UTR	ENST00000391810	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-intron	ENST00000391810	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000358049	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000358049	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-intron	ENST00000358049	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369061		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000357555		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000358487		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000356226		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369060		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369059		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000346997		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000457416		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000351936		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000360144		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369056		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-5UTR	ENST00000597509	ENST00000490349		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-5UTR	ENST00000597509	ENST00000359354		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-intron	ENST00000597509	ENST00000478859		TCGA	RV	PRAD	TCGA-V1-A9O5-06A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
Frame-shit	ENST00000328194	ENST00000457346		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000328194	ENST00000309263		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000328194	ENST00000450649		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000328194	ENST00000520467		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
5CDS-intron	ENST00000328194	ENST00000534295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000530044	ENST00000457346		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000530044	ENST00000309263		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000530044	ENST00000450649		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000530044	ENST00000520467		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
5CDS-intron	ENST00000530044	ENST00000534295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000527700	ENST00000457346		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000527700	ENST00000309263		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000527700	ENST00000450649		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
Frame-shit	ENST00000527700	ENST00000520467		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
5CDS-intron	ENST00000527700	ENST00000534295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
intron-3CDS	ENST00000526523	ENST00000457346		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
intron-3CDS	ENST00000526523	ENST00000309263		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
intron-3CDS	ENST00000526523	ENST00000450649		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
intron-3CDS	ENST00000526523	ENST00000520467		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
intron-intron	ENST00000526523	ENST00000534295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	DENND5A	chr11	9171628	-	SCUBE2	chr11	9043502	-
intron-intron	ENST00000361924	ENST00000333167		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000361924	ENST00000301810		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000361924	ENST00000480865		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000361924	ENST00000450296		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000361924	ENST00000544624		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000361924	ENST00000444607		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000435830	ENST00000333167		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000435830	ENST00000301810		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000435830	ENST00000480865		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000435830	ENST00000450296		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000435830	ENST00000544624		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000435830	ENST00000444607		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000444882	ENST00000333167		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000444882	ENST00000301810		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000444882	ENST00000480865		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000444882	ENST00000450296		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000444882	ENST00000544624		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-intron	ENST00000444882	ENST00000444607		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
5CDS-intron	ENST00000356847	ENST00000333167		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
5CDS-intron	ENST00000356847	ENST00000301810		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
5CDS-intron	ENST00000356847	ENST00000480865		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
5CDS-intron	ENST00000356847	ENST00000450296		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
5CDS-intron	ENST00000356847	ENST00000544624		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
5CDS-intron	ENST00000356847	ENST00000444607		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	GOLGA4	chr3	37315092	+	ACAA1	chr3	38145284	-
intron-3CDS	ENST00000338086	ENST00000374303		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000338086	ENST00000474295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000338086	ENST00000469815		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000338086	ENST00000526894		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000338086	ENST00000524618		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000338086	ENST00000374307		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000338086	ENST00000374301		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000338086	ENST00000374300		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000338086	ENST00000466284		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3CDS	ENST00000319801	ENST00000374303		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000319801	ENST00000474295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000319801	ENST00000469815		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000319801	ENST00000526894		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000319801	ENST00000524618		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000319801	ENST00000374307		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000319801	ENST00000374301		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000319801	ENST00000374300		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000319801	ENST00000466284		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3CDS	ENST00000361078	ENST00000374303		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000361078	ENST00000474295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000361078	ENST00000469815		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000361078	ENST00000526894		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000361078	ENST00000524618		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000361078	ENST00000374307		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000361078	ENST00000374301		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000361078	ENST00000374300		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000361078	ENST00000466284		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3CDS	ENST00000536417	ENST00000374303		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3UTR	ENST00000536417	ENST00000474295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3UTR	ENST00000536417	ENST00000469815		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000536417	ENST00000526894		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000536417	ENST00000524618		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000536417	ENST00000374307		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000536417	ENST00000374301		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000536417	ENST00000374300		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3UTR	ENST00000536417	ENST00000466284		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3CDS	ENST00000403432	ENST00000374303		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3UTR	ENST00000403432	ENST00000474295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3UTR	ENST00000403432	ENST00000469815		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000403432	ENST00000526894		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000403432	ENST00000524618		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000403432	ENST00000374307		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000403432	ENST00000374301		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-intron	ENST00000403432	ENST00000374300		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
5UTR-3UTR	ENST00000403432	ENST00000466284		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3CDS	ENST00000420234	ENST00000374303		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000420234	ENST00000474295		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000420234	ENST00000469815		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000420234	ENST00000526894		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000420234	ENST00000524618		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000420234	ENST00000374307		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000420234	ENST00000374301		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-intron	ENST00000420234	ENST00000374300		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
intron-3UTR	ENST00000420234	ENST00000466284		TCGA	LD	PRAD	TCGA-2A-A8VL-01A	PUM2	chr2	20550358	-	MTFR1L	chr1	26158412	+
Frame-shit	ENST00000292577	ENST00000344749		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
Frame-shit	ENST00000292577	ENST00000262965		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000292577	ENST00000453954		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000292577	ENST00000395423		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000292577	ENST00000588136		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
Frame-shit	ENST00000250974	ENST00000344749		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
Frame-shit	ENST00000250974	ENST00000262965		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000250974	ENST00000453954		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000250974	ENST00000395423		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000250974	ENST00000588136		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
In-frame	ENST00000590661	ENST00000344749		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
In-frame	ENST00000590661	ENST00000262965		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000590661	ENST00000453954		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000590661	ENST00000395423		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
5CDS-intron	ENST00000590661	ENST00000588136		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	ABHD17A	chr19	1881234	-	TCF3	chr19	1646426	-
intron-3CDS	ENST00000262189	ENST00000316149		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
intron-5UTR	ENST00000262189	ENST00000489477		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
Frame-shit	ENST00000355193	ENST00000316149		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
5CDS-5UTR	ENST00000355193	ENST00000489477		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
intron-3CDS	ENST00000485655	ENST00000316149		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
intron-5UTR	ENST00000485655	ENST00000489477		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
intron-3CDS	ENST00000485241	ENST00000316149		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
intron-5UTR	ENST00000485241	ENST00000489477		TCGA	LD	PRAD	TCGA-2A-A8VT-01A	KMT2C	chr7	151854846	-	NDUFAF4	chr6	97344723	-
In-frame	ENST00000373996	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
In-frame	ENST00000373996	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
In-frame	ENST00000313400	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
In-frame	ENST00000313400	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
In-frame	ENST00000361209	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
In-frame	ENST00000361209	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
5UTR-3CDS	ENST00000361477	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
5UTR-3CDS	ENST00000361477	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-3CDS	ENST00000288520	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-3CDS	ENST00000288520	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-3CDS	ENST00000341734	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-3CDS	ENST00000341734	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-3CDS	ENST00000358637	ENST00000318003		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-3CDS	ENST00000358637	ENST00000589606		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	ASTN2	chr9	119488050	-	CC2D1A	chr19	14028883	+
intron-intron	ENST00000515037	ENST00000382148		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000515037	ENST00000447367		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000515037	ENST00000382150		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000515037	ENST00000382152		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000515037	ENST00000509207		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000515037	ENST00000382149		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000515037	ENST00000359001		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000382148		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000447367		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000382150		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000382152		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000509207		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000382149		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5UTR-intron	ENST00000358869	ENST00000359001		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000382148		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000447367		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000382150		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000382152		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000509207		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000382149		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
intron-intron	ENST00000513966	ENST00000359001		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	FAM114A1	chr4	38870167	+	KCNIP4	chr4	21764655	-
5CDS-intron	ENST00000356175	ENST00000458129		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000356175	ENST00000275815		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000358273	ENST00000458129		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000358273	ENST00000275815		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
intron-intron	ENST00000431387	ENST00000458129		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
intron-intron	ENST00000431387	ENST00000275815		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
intron-intron	ENST00000581113	ENST00000458129		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
intron-intron	ENST00000581113	ENST00000275815		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000417592	ENST00000458129		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000417592	ENST00000275815		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000444181	ENST00000458129		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
5CDS-intron	ENST00000444181	ENST00000275815		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	NF1	chr17	29664898	+	EPHA1	chr7	143088868	-
Frame-shit	ENST00000372564	ENST00000454366		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SH3GLB2	chr9	131790371	-	GTSE1	chr22	46722333	+
Frame-shit	ENST00000372559	ENST00000454366		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SH3GLB2	chr9	131790371	-	GTSE1	chr22	46722333	+
Frame-shit	ENST00000372554	ENST00000454366		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SH3GLB2	chr9	131790371	-	GTSE1	chr22	46722333	+
Frame-shit	ENST00000417224	ENST00000454366		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SH3GLB2	chr9	131790371	-	GTSE1	chr22	46722333	+
Frame-shit	ENST00000416629	ENST00000454366		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SH3GLB2	chr9	131790371	-	GTSE1	chr22	46722333	+
5UTR-intron	ENST00000415881	ENST00000509702		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5UTR-intron	ENST00000415881	ENST00000264867		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5UTR-intron	ENST00000415881	ENST00000507380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000404933	ENST00000509702		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000404933	ENST00000264867		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000404933	ENST00000507380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000379404	ENST00000509702		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000379404	ENST00000264867		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
5CDS-intron	ENST00000379404	ENST00000507380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
3UTR-intron	ENST00000478094	ENST00000509702		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
3UTR-intron	ENST00000478094	ENST00000264867		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
3UTR-intron	ENST00000478094	ENST00000507380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	SMS	chrX	21958991	+	PPARGC1A	chr4	23886554	-
3UTR-3CDS	ENST00000476901	ENST00000477853		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
3UTR-intron	ENST00000476901	ENST00000480380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
3UTR-intron	ENST00000476901	ENST00000375199		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
3UTR-intron	ENST00000476901	ENST00000375208		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
3UTR-intron	ENST00000476901	ENST00000356068		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-3CDS	ENST00000290846	ENST00000477853		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000290846	ENST00000480380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000290846	ENST00000375199		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000290846	ENST00000375208		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000290846	ENST00000356068		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-3CDS	ENST00000381019	ENST00000477853		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000381019	ENST00000480380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000381019	ENST00000375199		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000381019	ENST00000375208		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000381019	ENST00000356068		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-3CDS	ENST00000424260	ENST00000477853		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000424260	ENST00000480380		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000424260	ENST00000375199		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000424260	ENST00000375208		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
intron-intron	ENST00000424260	ENST00000356068		TCGA	LD	PRAD	TCGA-2A-A8W1-01A	TRMU	chr22	46727629	+	EMC1	chr1	19571524	-
5UTR-3CDS	ENST00000392509	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
5UTR-3CDS	ENST00000392509	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
5UTR-3UTR	ENST00000392509	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
5UTR-3CDS	ENST00000548342	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
5UTR-3CDS	ENST00000548342	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
5UTR-3UTR	ENST00000548342	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000242577	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000242577	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000242577	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000548214	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000548214	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000548214	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000392508	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000392508	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000392508	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000550178	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000550178	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000550178	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000550845	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000550845	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000550845	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000549989	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000549989	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000549989	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000552870	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000552870	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000552870	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000552316	ENST00000325954		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3CDS	ENST00000552316	ENST00000413266		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
intron-3UTR	ENST00000552316	ENST00000542701		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	DYNLL1	chr12	120907907	+	RNF10	chr12	121013434	+
5UTR-5UTR	ENST00000265755	ENST00000431197		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000265755	ENST00000285871		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-intron	ENST00000265755	ENST00000415740		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000455841	ENST00000431197		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000455841	ENST00000285871		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-intron	ENST00000455841	ENST00000415740		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000424337	ENST00000431197		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-5UTR	ENST00000424337	ENST00000285871		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
5UTR-intron	ENST00000424337	ENST00000415740		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000476977	ENST00000431197		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000476977	ENST00000285871		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-intron	ENST00000476977	ENST00000415740		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000489094	ENST00000431197		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-5UTR	ENST00000489094	ENST00000285871		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
intron-intron	ENST00000489094	ENST00000415740		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	GTF2IRD1	chr7	73868506	+	CCDC146	chr7	76796975	+
3UTR-3CDS	ENST00000494757	ENST00000591972		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
3UTR-intron	ENST00000494757	ENST00000589683		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
3UTR-intron	ENST00000494757	ENST00000253796		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
3UTR-intron	ENST00000494757	ENST00000587142		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
3UTR-intron	ENST00000494757	ENST00000588576		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-3CDS	ENST00000323571	ENST00000591972		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000323571	ENST00000589683		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000323571	ENST00000253796		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000323571	ENST00000587142		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000323571	ENST00000588576		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-3CDS	ENST00000585043	ENST00000591972		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000585043	ENST00000589683		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000585043	ENST00000253796		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000585043	ENST00000587142		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000585043	ENST00000588576		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-3CDS	ENST00000394103	ENST00000591972		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000394103	ENST00000589683		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000394103	ENST00000253796		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000394103	ENST00000587142		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000394103	ENST00000588576		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-3CDS	ENST00000536600	ENST00000591972		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000536600	ENST00000589683		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000536600	ENST00000253796		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000536600	ENST00000587142		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
5UTR-intron	ENST00000536600	ENST00000588576		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
intron-3CDS	ENST00000583130	ENST00000591972		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
intron-intron	ENST00000583130	ENST00000589683		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
intron-intron	ENST00000583130	ENST00000253796		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
intron-intron	ENST00000583130	ENST00000587142		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
intron-intron	ENST00000583130	ENST00000588576		TCGA	LD	PRAD	TCGA-2A-A8W3-01A	WIPF2	chr17	38375744	+	RAMP2	chr17	40910465	+
Frame-shit	ENST00000565468	ENST00000368842		TCGA	LD	PRAD	TCGA-2A-AAYU-01A	TMEM178B	chr7	140912504	+	LHPP	chr10	126172708	+
Frame-shit	ENST00000565468	ENST00000368839		TCGA	LD	PRAD	TCGA-2A-AAYU-01A	TMEM178B	chr7	140912504	+	LHPP	chr10	126172708	+
Frame-shit	ENST00000565468	ENST00000392757		TCGA	LD	PRAD	TCGA-2A-AAYU-01A	TMEM178B	chr7	140912504	+	LHPP	chr10	126172708	+
5CDS-intron	ENST00000565468	ENST00000482963		TCGA	LD	PRAD	TCGA-2A-AAYU-01A	TMEM178B	chr7	140912504	+	LHPP	chr10	126172708	+
Frame-shit	ENST00000336375	ENST00000305877		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
Frame-shit	ENST00000336375	ENST00000359540		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
5CDS-intron	ENST00000336375	ENST00000398512		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
5CDS-3UTR	ENST00000336375	ENST00000436990		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-3CDS	ENST00000475741	ENST00000305877		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-3CDS	ENST00000475741	ENST00000359540		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-intron	ENST00000475741	ENST00000398512		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-3UTR	ENST00000475741	ENST00000436990		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
Frame-shit	ENST00000351273	ENST00000305877		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
Frame-shit	ENST00000351273	ENST00000359540		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
5CDS-intron	ENST00000351273	ENST00000398512		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
5CDS-3UTR	ENST00000351273	ENST00000436990		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-3CDS	ENST00000489084	ENST00000305877		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-3CDS	ENST00000489084	ENST00000359540		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-intron	ENST00000489084	ENST00000398512		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
intron-3UTR	ENST00000489084	ENST00000436990		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	ACPP	chr3	132056398	+	BCR	chr22	23653884	+
In-frame	ENST00000316549	ENST00000284770		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SLC9A9	chr3	143513843	-	PDLIM3	chr4	186427806	-
In-frame	ENST00000316549	ENST00000284771		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SLC9A9	chr3	143513843	-	PDLIM3	chr4	186427806	-
5CDS-3UTR	ENST00000316549	ENST00000284767		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SLC9A9	chr3	143513843	-	PDLIM3	chr4	186427806	-
intron-3CDS	ENST00000498717	ENST00000284770		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SLC9A9	chr3	143513843	-	PDLIM3	chr4	186427806	-
intron-3CDS	ENST00000498717	ENST00000284771		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SLC9A9	chr3	143513843	-	PDLIM3	chr4	186427806	-
intron-3UTR	ENST00000498717	ENST00000284767		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SLC9A9	chr3	143513843	-	PDLIM3	chr4	186427806	-
5UTR-5UTR	ENST00000437398	ENST00000512055		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000437398	ENST00000429747		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000437398	ENST00000512332		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000437398	ENST00000511604		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000437398	ENST00000502818		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000437398	ENST00000503204		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-5UTR	ENST00000314328	ENST00000512055		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000314328	ENST00000429747		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000314328	ENST00000512332		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000314328	ENST00000511604		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000314328	ENST00000502818		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000314328	ENST00000503204		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-5UTR	ENST00000541492	ENST00000512055		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000541492	ENST00000429747		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000541492	ENST00000512332		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000541492	ENST00000511604		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000541492	ENST00000502818		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
5UTR-intron	ENST00000541492	ENST00000503204		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
3UTR-5UTR	ENST00000416735	ENST00000512055		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
3UTR-intron	ENST00000416735	ENST00000429747		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
3UTR-intron	ENST00000416735	ENST00000512332		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
3UTR-intron	ENST00000416735	ENST00000511604		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
3UTR-intron	ENST00000416735	ENST00000502818		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
3UTR-intron	ENST00000416735	ENST00000503204		TCGA	LD	PRAD	TCGA-4L-AA1F-01A	SPECC1L	chr22	24666951	+	CPNE4	chr3	132003014	-
intron-3CDS	ENST00000503538	ENST00000251849		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000442415		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000534997		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000542177		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000251849		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000442415		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000534997		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000542177		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000251849		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000442415		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000534997		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000542177		TCGA	LD	PRAD	TCGA-CH-5737-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	PRAD	TCGA-CH-5737-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
In-frame	ENST00000400068	ENST00000282251		TCGA	LD	PRAD	TCGA-CH-5738-01A	SIRPA	chr20	1915400	+	CWF19L2	chr11	107263621	-
In-frame	ENST00000400068	ENST00000433523		TCGA	LD	PRAD	TCGA-CH-5738-01A	SIRPA	chr20	1915400	+	CWF19L2	chr11	107263621	-
In-frame	ENST00000356025	ENST00000282251		TCGA	LD	PRAD	TCGA-CH-5738-01A	SIRPA	chr20	1915400	+	CWF19L2	chr11	107263621	-
In-frame	ENST00000356025	ENST00000433523		TCGA	LD	PRAD	TCGA-CH-5738-01A	SIRPA	chr20	1915400	+	CWF19L2	chr11	107263621	-
In-frame	ENST00000358771	ENST00000282251		TCGA	LD	PRAD	TCGA-CH-5738-01A	SIRPA	chr20	1915400	+	CWF19L2	chr11	107263621	-
In-frame	ENST00000358771	ENST00000433523		TCGA	LD	PRAD	TCGA-CH-5738-01A	SIRPA	chr20	1915400	+	CWF19L2	chr11	107263621	-
5UTR-5UTR	ENST00000434000	ENST00000360085		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5UTR-intron	ENST00000434000	ENST00000592796		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000591680	ENST00000360085		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000591680	ENST00000592796		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
intron-5UTR	ENST00000586265	ENST00000360085		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
intron-intron	ENST00000586265	ENST00000592796		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000592154	ENST00000360085		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000592154	ENST00000592796		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000588554	ENST00000360085		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000588554	ENST00000592796		TCGA	LD	PRAD	TCGA-CH-5739-01A	GPATCH8	chr17	42580694	-	PYY	chr17	42043900	-
Frame-shit	ENST00000336648	ENST00000279024		TCGA	LD	PRAD	TCGA-CH-5739-01A	HLCS	chr21	38269160	-	KIAA1755	chr20	36856642	-
Frame-shit	ENST00000399120	ENST00000279024		TCGA	LD	PRAD	TCGA-CH-5739-01A	HLCS	chr21	38269160	-	KIAA1755	chr20	36856642	-
intron-3CDS	ENST00000482273	ENST00000279024		TCGA	LD	PRAD	TCGA-CH-5739-01A	HLCS	chr21	38269160	-	KIAA1755	chr20	36856642	-
In-frame	ENST00000389629	ENST00000220325		TCGA	LD	PRAD	TCGA-CH-5739-01A	RTF1	chr15	41750074	+	EHD4	chr15	42246138	-
intron-3CDS	ENST00000462276	ENST00000220325		TCGA	LD	PRAD	TCGA-CH-5739-01A	RTF1	chr15	41750074	+	EHD4	chr15	42246138	-
5CDS-5UTR	ENST00000443824	ENST00000289373		TCGA	LD	PRAD	TCGA-CH-5740-01A	CTPS2	chrX	16685637	-	TMSB15A	chrX	101770108	-
5CDS-5UTR	ENST00000359276	ENST00000289373		TCGA	LD	PRAD	TCGA-CH-5740-01A	CTPS2	chrX	16685637	-	TMSB15A	chrX	101770108	-
5CDS-5UTR	ENST00000380241	ENST00000289373		TCGA	LD	PRAD	TCGA-CH-5740-01A	CTPS2	chrX	16685637	-	TMSB15A	chrX	101770108	-
intron-5UTR	ENST00000483053	ENST00000289373		TCGA	LD	PRAD	TCGA-CH-5740-01A	CTPS2	chrX	16685637	-	TMSB15A	chrX	101770108	-
intron-3CDS	ENST00000541592	ENST00000266397		TCGA	LD	PRAD	TCGA-CH-5740-01A	HIST4H4	chr12	14923613	-	ERP27	chr12	15070237	-
intron-3CDS	ENST00000541592	ENST00000540097		TCGA	LD	PRAD	TCGA-CH-5740-01A	HIST4H4	chr12	14923613	-	ERP27	chr12	15070237	-
intron-intron	ENST00000541592	ENST00000544881		TCGA	LD	PRAD	TCGA-CH-5740-01A	HIST4H4	chr12	14923613	-	ERP27	chr12	15070237	-
intron-3CDS	ENST00000539745	ENST00000266397		TCGA	LD	PRAD	TCGA-CH-5740-01A	HIST4H4	chr12	14923613	-	ERP27	chr12	15070237	-
intron-3CDS	ENST00000539745	ENST00000540097		TCGA	LD	PRAD	TCGA-CH-5740-01A	HIST4H4	chr12	14923613	-	ERP27	chr12	15070237	-
intron-intron	ENST00000539745	ENST00000544881		TCGA	LD	PRAD	TCGA-CH-5740-01A	HIST4H4	chr12	14923613	-	ERP27	chr12	15070237	-
Frame-shit	ENST00000316594	ENST00000380342		TCGA	LD	PRAD	TCGA-CH-5740-01A	HNRNPH2	chrX	100667512	+	TMEM27	chrX	15657879	-
5UTR-3CDS	ENST00000354618	ENST00000296255		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
5UTR-5UTR	ENST00000354618	ENST00000497289		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
5UTR-intron	ENST00000354618	ENST00000490166		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
5UTR-3CDS	ENST00000469141	ENST00000296255		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
5UTR-5UTR	ENST00000469141	ENST00000497289		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
5UTR-intron	ENST00000469141	ENST00000490166		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
intron-3CDS	ENST00000466743	ENST00000296255		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
intron-5UTR	ENST00000466743	ENST00000497289		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
intron-intron	ENST00000466743	ENST00000490166		TCGA	LD	PRAD	TCGA-CH-5740-01A	THRAP3	chr1	36690106	+	RPN1	chr3	128363826	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5740-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000432905	ENST00000341547		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
intron-3CDS	ENST00000432905	ENST00000357063		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
intron-3CDS	ENST00000432905	ENST00000377534		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
intron-3CDS	ENST00000432905	ENST00000321797		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
intron-3CDS	ENST00000432905	ENST00000526202		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
intron-3CDS	ENST00000432905	ENST00000465261		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
intron-intron	ENST00000432905	ENST00000605961		TCGA	LD	PRAD	TCGA-CH-5740-01A	TPTE2P5	chr13	41400642	-	LMO7	chr13	76410533	+
In-frame	ENST00000336375	ENST00000242152		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
In-frame	ENST00000336375	ENST00000407573		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
Frame-shit	ENST00000336375	ENST00000405982		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
Frame-shit	ENST00000475741	ENST00000242152		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
Frame-shit	ENST00000475741	ENST00000407573		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
Frame-shit	ENST00000475741	ENST00000405982		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
Frame-shit	ENST00000351273	ENST00000242152		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
Frame-shit	ENST00000351273	ENST00000407573		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
In-frame	ENST00000351273	ENST00000405982		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
intron-3CDS	ENST00000489084	ENST00000242152		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
intron-3CDS	ENST00000489084	ENST00000407573		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
intron-3CDS	ENST00000489084	ENST00000405982		TCGA	LD	PRAD	TCGA-CH-5741-01A	ACPP	chr3	132075699	+	NPY	chr7	24331282	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5743-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000265343	ENST00000304058		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000265343	ENST00000510708		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000265343	ENST00000515439		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000378595	ENST00000304058		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000378595	ENST00000510708		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000378595	ENST00000515439		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000491831	ENST00000304058		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000491831	ENST00000510708		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5UTR-3CDS	ENST00000491831	ENST00000515439		TCGA	LD	PRAD	TCGA-CH-5744-01A	AFF4	chr5	132298951	-	DTWD2	chr5	118183913	-
5CDS-intron	ENST00000368911	ENST00000368882		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000368911	ENST00000368885		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000368911	ENST00000451850		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000368911	ENST00000368877		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-5UTR	ENST00000368911	ENST00000368876		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000323817	ENST00000368882		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000323817	ENST00000368885		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000323817	ENST00000451850		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-intron	ENST00000323817	ENST00000368877		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5CDS-5UTR	ENST00000323817	ENST00000368876		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000413605	ENST00000368882		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000413605	ENST00000368885		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000413605	ENST00000451850		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000413605	ENST00000368877		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-5UTR	ENST00000413605	ENST00000368876		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000497709	ENST00000368882		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000497709	ENST00000368885		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000497709	ENST00000451850		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-intron	ENST00000497709	ENST00000368877		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
intron-5UTR	ENST00000497709	ENST00000368876		TCGA	LD	PRAD	TCGA-CH-5744-01A	CDK19	chr6	110988637	-	AMD1	chr6	111208708	+
5UTR-3CDS	ENST00000550487	ENST00000552491		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550487	ENST00000547825		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550487	ENST00000552823		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550487	ENST00000394943		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550487	ENST00000341247		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550487	ENST00000552783		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550487	ENST00000552909		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-5UTR	ENST00000550487	ENST00000552008		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000552491		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000547825		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000552823		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000394943		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000341247		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000552783		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000317943	ENST00000552909		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-5UTR	ENST00000317943	ENST00000552008		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000552491		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000547825		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000552823		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000394943		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000341247		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000552783		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000550654	ENST00000552909		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-5UTR	ENST00000550654	ENST00000552008		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000552491		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000547825		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000552823		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000394943		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000341247		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000552783		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-3CDS	ENST00000548985	ENST00000552909		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
5UTR-5UTR	ENST00000548985	ENST00000552008		TCGA	LD	PRAD	TCGA-CH-5744-01A	COX14	chr12	50506084	+	LIMA1	chr12	50586344	-
In-frame	ENST00000341516	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000341516	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000341516	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000554215	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000554215	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000554215	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000556847	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000556847	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
Frame-shit	ENST00000556847	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000557386	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000557386	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000557386	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000389997	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000389997	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000389997	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
5UTR-3CDS	ENST00000553293	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
5UTR-3CDS	ENST00000553293	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
5UTR-3CDS	ENST00000553293	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	DCAF5	chr14	69583083	-	RDH11	chr14	68159769	-
In-frame	ENST00000304058	ENST00000265343		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
In-frame	ENST00000304058	ENST00000378595		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
5CDS-intron	ENST00000304058	ENST00000491831		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
In-frame	ENST00000510708	ENST00000265343		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
In-frame	ENST00000510708	ENST00000378595		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
5CDS-intron	ENST00000510708	ENST00000491831		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
intron-3CDS	ENST00000515439	ENST00000265343		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
intron-3CDS	ENST00000515439	ENST00000378595		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
intron-intron	ENST00000515439	ENST00000491831		TCGA	LD	PRAD	TCGA-CH-5744-01A	DTWD2	chr5	118264232	-	AFF4	chr5	132234833	-
Frame-shit	ENST00000270517	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000270517	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000270517	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-3CDS	ENST00000588998	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-intron	ENST00000588998	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-intron	ENST00000588998	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
Frame-shit	ENST00000252440	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000252440	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000252440	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-3CDS	ENST00000417981	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-intron	ENST00000417981	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-intron	ENST00000417981	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
Frame-shit	ENST00000591104	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000591104	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000591104	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
Frame-shit	ENST00000592312	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000592312	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
5CDS-intron	ENST00000592312	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-3CDS	ENST00000591352	ENST00000380456		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-intron	ENST00000591352	ENST00000568628		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
intron-intron	ENST00000591352	ENST00000393423		TCGA	LD	PRAD	TCGA-CH-5744-01A	ECSIT	chr19	11623871	-	RGL3	chr19	11517540	-
Frame-shit	ENST00000369303	ENST00000216452		TCGA	LD	PRAD	TCGA-CH-5744-01A	EPHA7	chr6	94066435	-	PIGH	chr14	68060669	-
Frame-shit	ENST00000369303	ENST00000560722		TCGA	LD	PRAD	TCGA-CH-5744-01A	EPHA7	chr6	94066435	-	PIGH	chr14	68060669	-
5CDS-intron	ENST00000369303	ENST00000559581		TCGA	LD	PRAD	TCGA-CH-5744-01A	EPHA7	chr6	94066435	-	PIGH	chr14	68060669	-
intron-3CDS	ENST00000369297	ENST00000216452		TCGA	LD	PRAD	TCGA-CH-5744-01A	EPHA7	chr6	94066435	-	PIGH	chr14	68060669	-
intron-3CDS	ENST00000369297	ENST00000560722		TCGA	LD	PRAD	TCGA-CH-5744-01A	EPHA7	chr6	94066435	-	PIGH	chr14	68060669	-
intron-intron	ENST00000369297	ENST00000559581		TCGA	LD	PRAD	TCGA-CH-5744-01A	EPHA7	chr6	94066435	-	PIGH	chr14	68060669	-
intron-5UTR	ENST00000398907	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000398907	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000398907	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000398905	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000398905	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000398905	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000288319	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000288319	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000288319	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000398897	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000398897	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000398897	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398911	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398911	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398911	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398910	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398910	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398910	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000417133	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000417133	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000417133	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000442448	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000442448	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000442448	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000453032	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000453032	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000453032	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398919	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398919	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5CDS-5UTR	ENST00000398919	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000429727	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000429727	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
intron-5UTR	ENST00000429727	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000485493	ENST00000510636		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000485493	ENST00000261944		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-5UTR	ENST00000485493	ENST00000506348		TCGA	LD	PRAD	TCGA-CH-5744-01A	ERG	chr21	39947586	-	CDHR2	chr5	175992339	+
5UTR-3CDS	ENST00000602377	ENST00000450466		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-3CDS	ENST00000602377	ENST00000383233		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-3UTR	ENST00000602377	ENST00000542162		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-intron	ENST00000602377	ENST00000399707		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-intron	ENST00000602377	ENST00000475185		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-3CDS	ENST00000268797	ENST00000450466		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-3CDS	ENST00000268797	ENST00000383233		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-3UTR	ENST00000268797	ENST00000542162		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-intron	ENST00000268797	ENST00000399707		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
5UTR-intron	ENST00000268797	ENST00000475185		TCGA	LD	PRAD	TCGA-CH-5744-01A	GFOD2	chr16	67753066	-	TMEM241	chr18	20936627	-
Frame-shit	ENST00000319550	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5744-01A	NT5DC1	chr6	116422186	+	RDH11	chr14	68159310	-
Frame-shit	ENST00000319550	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5744-01A	NT5DC1	chr6	116422186	+	RDH11	chr14	68159310	-
Frame-shit	ENST00000319550	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5744-01A	NT5DC1	chr6	116422186	+	RDH11	chr14	68159310	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000368069	ENST00000333461		TCGA	LD	PRAD	TCGA-CH-5745-01A	COPA	chr1	160312921	-	STAC2	chr17	37374426	-
In-frame	ENST00000241704	ENST00000333461		TCGA	LD	PRAD	TCGA-CH-5745-01A	COPA	chr1	160312921	-	STAC2	chr17	37374426	-
5UTR-3CDS	ENST00000375592	ENST00000375599		TCGA	LD	PRAD	TCGA-CH-5745-01A	FBXO42	chr1	16678750	-	RSG1	chr1	16560259	-
intron-3CDS	ENST00000478089	ENST00000375599		TCGA	LD	PRAD	TCGA-CH-5745-01A	FBXO42	chr1	16678750	-	RSG1	chr1	16560259	-
In-frame	ENST00000340648	ENST00000291634		TCGA	LD	PRAD	TCGA-CH-5745-01A	RRP1B	chr21	45110321	+	FAM207A	chr21	46363599	+
In-frame	ENST00000340648	ENST00000397826		TCGA	LD	PRAD	TCGA-CH-5745-01A	RRP1B	chr21	45110321	+	FAM207A	chr21	46363599	+
5CDS-intron	ENST00000340648	ENST00000479127		TCGA	LD	PRAD	TCGA-CH-5745-01A	RRP1B	chr21	45110321	+	FAM207A	chr21	46363599	+
Frame-shit	ENST00000542507	ENST00000264914		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000542507	ENST00000396151		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000542507	ENST00000565165		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000542507	ENST00000521800		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
Frame-shit	ENST00000373812	ENST00000264914		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000373812	ENST00000396151		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000373812	ENST00000565165		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000373812	ENST00000521800		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
Frame-shit	ENST00000541996	ENST00000264914		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000541996	ENST00000396151		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000541996	ENST00000565165		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
5CDS-intron	ENST00000541996	ENST00000521800		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
3UTR-3CDS	ENST00000478283	ENST00000264914		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
3UTR-intron	ENST00000478283	ENST00000396151		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
3UTR-intron	ENST00000478283	ENST00000565165		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
3UTR-intron	ENST00000478283	ENST00000521800		TCGA	LD	PRAD	TCGA-CH-5745-01A	YTHDF2	chr1	29070498	+	ARSB	chr5	78077797	-
In-frame	ENST00000367545	ENST00000317173		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
Frame-shit	ENST00000367545	ENST00000441698		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
5CDS-intron	ENST00000367545	ENST00000518255		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
5CDS-intron	ENST00000367545	ENST00000521209		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
5CDS-intron	ENST00000367545	ENST00000528246		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
5CDS-intron	ENST00000367545	ENST00000382490		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
5CDS-intron	ENST00000367545	ENST00000517594		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-3CDS	ENST00000367526	ENST00000317173		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-3CDS	ENST00000367526	ENST00000441698		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000367526	ENST00000518255		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000367526	ENST00000521209		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000367526	ENST00000528246		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000367526	ENST00000382490		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000367526	ENST00000517594		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-3CDS	ENST00000480333	ENST00000317173		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-3CDS	ENST00000480333	ENST00000441698		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000480333	ENST00000518255		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000480333	ENST00000521209		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000480333	ENST00000528246		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000480333	ENST00000382490		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-intron	ENST00000480333	ENST00000517594		TCGA	LD	PRAD	TCGA-CH-5746-01A	UTRN	chr6	144801118	+	MSRA	chr8	10285658	+
intron-3CDS	ENST00000541592	ENST00000261349		TCGA	LD	PRAD	TCGA-CH-5748-01A	HIST4H4	chr12	14923613	-	LRP6	chr12	12356334	-
intron-3CDS	ENST00000541592	ENST00000543091		TCGA	LD	PRAD	TCGA-CH-5748-01A	HIST4H4	chr12	14923613	-	LRP6	chr12	12356334	-
intron-intron	ENST00000541592	ENST00000540415		TCGA	LD	PRAD	TCGA-CH-5748-01A	HIST4H4	chr12	14923613	-	LRP6	chr12	12356334	-
intron-3CDS	ENST00000539745	ENST00000261349		TCGA	LD	PRAD	TCGA-CH-5748-01A	HIST4H4	chr12	14923613	-	LRP6	chr12	12356334	-
intron-3CDS	ENST00000539745	ENST00000543091		TCGA	LD	PRAD	TCGA-CH-5748-01A	HIST4H4	chr12	14923613	-	LRP6	chr12	12356334	-
intron-intron	ENST00000539745	ENST00000540415		TCGA	LD	PRAD	TCGA-CH-5748-01A	HIST4H4	chr12	14923613	-	LRP6	chr12	12356334	-
Frame-shit	ENST00000286548	ENST00000543418		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000286548	ENST00000392833		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000286548	ENST00000362010		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000286548	ENST00000392832		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000469007		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000494677		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000537559		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000468233		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000543418		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000392833		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000362010		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000392832		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000469007		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000494677		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000537559		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000468233		TCGA	LD	PRAD	TCGA-CH-5750-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
intron-3CDS	ENST00000438568	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000438568	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369054	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369054	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369064	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369064	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000606933	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000606933	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000463555	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000463555	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5750-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
3UTR-5UTR	ENST00000497512	ENST00000264485		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
3UTR-5UTR	ENST00000497512	ENST00000425175		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
3UTR-5UTR	ENST00000497512	ENST00000351898		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
3UTR-intron	ENST00000497512	ENST00000340595		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
3UTR-intron	ENST00000497512	ENST00000514331		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
3UTR-intron	ENST00000497512	ENST00000512686		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000316355	ENST00000264485		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000316355	ENST00000425175		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000316355	ENST00000351898		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000316355	ENST00000340595		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000316355	ENST00000514331		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000316355	ENST00000512686		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000354403	ENST00000264485		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000354403	ENST00000425175		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000354403	ENST00000351898		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000354403	ENST00000340595		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000354403	ENST00000514331		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000354403	ENST00000512686		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000502280	ENST00000264485		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000502280	ENST00000425175		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000502280	ENST00000351898		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000502280	ENST00000340595		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000502280	ENST00000514331		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000502280	ENST00000512686		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000395640	ENST00000264485		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000395640	ENST00000425175		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000395640	ENST00000351898		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000395640	ENST00000340595		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000395640	ENST00000514331		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000395640	ENST00000512686		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000509972	ENST00000264485		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000509972	ENST00000425175		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-5UTR	ENST00000509972	ENST00000351898		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000509972	ENST00000340595		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000509972	ENST00000514331		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
5CDS-intron	ENST00000509972	ENST00000512686		TCGA	LD	PRAD	TCGA-CH-5751-01A	CCNG2	chr4	78085632	+	SLC4A4	chr4	72102293	+
In-frame	ENST00000288985	ENST00000381668		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
In-frame	ENST00000288985	ENST00000264449		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
5CDS-intron	ENST00000288985	ENST00000510289		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
3UTR-3CDS	ENST00000466840	ENST00000381668		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
3UTR-3CDS	ENST00000466840	ENST00000264449		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
3UTR-intron	ENST00000466840	ENST00000510289		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
In-frame	ENST00000437817	ENST00000381668		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
In-frame	ENST00000437817	ENST00000264449		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
5CDS-intron	ENST00000437817	ENST00000510289		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
intron-3CDS	ENST00000407474	ENST00000381668		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
intron-3CDS	ENST00000407474	ENST00000264449		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
intron-intron	ENST00000407474	ENST00000510289		TCGA	LD	PRAD	TCGA-CH-5751-01A	ERCC6L2	chr9	98718295	+	ATP8A1	chr4	42526864	-
intron-3CDS	ENST00000446823	ENST00000404826		TCGA	LD	PRAD	TCGA-CH-5751-01A	FOXK1	chr7	4722499	+	SDK1	chr7	3861082	+
intron-3CDS	ENST00000446823	ENST00000389531		TCGA	LD	PRAD	TCGA-CH-5751-01A	FOXK1	chr7	4722499	+	SDK1	chr7	3861082	+
intron-intron	ENST00000446823	ENST00000466611		TCGA	LD	PRAD	TCGA-CH-5751-01A	FOXK1	chr7	4722499	+	SDK1	chr7	3861082	+
In-frame	ENST00000328914	ENST00000404826		TCGA	LD	PRAD	TCGA-CH-5751-01A	FOXK1	chr7	4722499	+	SDK1	chr7	3861082	+
In-frame	ENST00000328914	ENST00000389531		TCGA	LD	PRAD	TCGA-CH-5751-01A	FOXK1	chr7	4722499	+	SDK1	chr7	3861082	+
5CDS-intron	ENST00000328914	ENST00000466611		TCGA	LD	PRAD	TCGA-CH-5751-01A	FOXK1	chr7	4722499	+	SDK1	chr7	3861082	+
Frame-shit	ENST00000286548	ENST00000543418		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000286548	ENST00000392833		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000286548	ENST00000362010		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000286548	ENST00000392832		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000469007		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000494677		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000537559		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000286548	ENST00000468233		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000543418		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000392833		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000362010		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
Frame-shit	ENST00000397476	ENST00000392832		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000469007		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000494677		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000537559		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-intron	ENST00000397476	ENST00000468233		TCGA	LD	PRAD	TCGA-CH-5751-01A	GNAQ	chr9	80409379	-	VEPH1	chr3	156983451	-
5CDS-5UTR	ENST00000394332	ENST00000374825		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394332	ENST00000496118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-3UTR	ENST00000394332	ENST00000580234		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394332	ENST00000374831		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394332	ENST00000395289		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394332	ENST00000443797		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000395287		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000449085		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000438194		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000466744		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000383108		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000547895		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000549843		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000442863		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000552513		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000442219		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000498329		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000488549		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000425201		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000399529		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000399528		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000550142		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000548837		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000399527		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000549236		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000482105		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000414731		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000449118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000550598		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000479973		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000546777		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000450320		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000547286		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000552587		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000549126		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000553146		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000448067		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000436979		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394332	ENST00000466208		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394333	ENST00000374825		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394333	ENST00000496118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-3UTR	ENST00000394333	ENST00000580234		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394333	ENST00000374831		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394333	ENST00000395289		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000394333	ENST00000443797		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000395287		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000449085		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000438194		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000466744		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000383108		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000547895		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000549843		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000442863		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000552513		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000442219		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000498329		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000488549		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000425201		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000399529		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000399528		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000550142		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000548837		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000399527		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000549236		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000482105		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000414731		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000449118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000550598		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000479973		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000546777		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000450320		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000547286		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000552587		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000549126		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000553146		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000448067		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000436979		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000394333	ENST00000466208		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000479035	ENST00000374825		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000479035	ENST00000496118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-3UTR	ENST00000479035	ENST00000580234		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000479035	ENST00000374831		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000479035	ENST00000395289		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000479035	ENST00000443797		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000395287		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000449085		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000438194		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000466744		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000383108		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000547895		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000549843		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000442863		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000552513		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000442219		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000498329		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000488549		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000425201		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000399529		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000399528		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000550142		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000548837		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000399527		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000549236		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000482105		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000414731		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000449118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000550598		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000479973		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000546777		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000450320		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000547286		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000552587		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000549126		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000553146		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000448067		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000436979		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000479035	ENST00000466208		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000245857	ENST00000374825		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000245857	ENST00000496118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-3UTR	ENST00000245857	ENST00000580234		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000245857	ENST00000374831		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000245857	ENST00000395289		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000245857	ENST00000443797		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000395287		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000449085		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000438194		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000466744		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000383108		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000547895		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000549843		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000442863		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000552513		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000442219		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000498329		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000488549		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000425201		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000399529		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000399528		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000550142		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000548837		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000399527		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000549236		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000482105		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000414731		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000449118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000550598		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000479973		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000546777		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000450320		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000547286		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000552587		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000549126		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000553146		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000448067		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000436979		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000245857	ENST00000466208		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000577407	ENST00000374825		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000577407	ENST00000496118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-3UTR	ENST00000577407	ENST00000580234		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000577407	ENST00000374831		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000577407	ENST00000395289		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-5UTR	ENST00000577407	ENST00000443797		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000395287		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000449085		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000438194		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000466744		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000383108		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000547895		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000549843		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000442863		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000552513		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000442219		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000498329		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000488549		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000425201		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000399529		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000399528		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000550142		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000548837		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000399527		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000549236		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000482105		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000414731		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000449118		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000550598		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000479973		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000546777		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000450320		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000547286		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000552587		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000549126		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000553146		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000448067		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000436979		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
5CDS-intron	ENST00000577407	ENST00000466208		TCGA	LD	PRAD	TCGA-CH-5751-01A	RPL23	chr17	37008857	-	BRD2	chr6	32939372	+
intron-3CDS	ENST00000438568	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000438568	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369054	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369054	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369064	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000369064	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000606933	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
Frame-shit	ENST00000606933	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000463555	ENST00000309092		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000463555	ENST00000369084		TCGA	LD	PRAD	TCGA-CH-5751-01A	TARS2	chr1	150463201	+	MRPS21	chr1	150280482	+
intron-3CDS	ENST00000282111	ENST00000402693		TCGA	LD	PRAD	TCGA-CH-5751-01A	TCF7L1	chr19	1615285	-	MEX3D	chr19	1556923	-
intron-3CDS	ENST00000282111	ENST00000388824		TCGA	LD	PRAD	TCGA-CH-5751-01A	TCF7L1	chr19	1615285	-	MEX3D	chr19	1556923	-
intron-3CDS	ENST00000494519	ENST00000402693		TCGA	LD	PRAD	TCGA-CH-5751-01A	TCF7L1	chr19	1615285	-	MEX3D	chr19	1556923	-
intron-3CDS	ENST00000494519	ENST00000388824		TCGA	LD	PRAD	TCGA-CH-5751-01A	TCF7L1	chr19	1615285	-	MEX3D	chr19	1556923	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5752-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000078429	ENST00000538303		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
In-frame	ENST00000078429	ENST00000379343		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
5CDS-intron	ENST00000078429	ENST00000357055		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
5CDS-intron	ENST00000078429	ENST00000435660		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
5CDS-intron	ENST00000078429	ENST00000282587		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
5CDS-intron	ENST00000078429	ENST00000406369		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-3CDS	ENST00000586180	ENST00000538303		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-3CDS	ENST00000586180	ENST00000379343		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-intron	ENST00000586180	ENST00000357055		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-intron	ENST00000586180	ENST00000435660		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-intron	ENST00000586180	ENST00000282587		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-intron	ENST00000586180	ENST00000406369		TCGA	LD	PRAD	TCGA-CH-5754-01A	GNA11	chr19	3094785	+	SLC30A6	chr2	32400388	+
intron-3CDS	ENST00000538303	ENST00000078429		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
intron-intron	ENST00000538303	ENST00000586180		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
Frame-shit	ENST00000379343	ENST00000078429		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
5CDS-intron	ENST00000379343	ENST00000586180		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
5UTR-3CDS	ENST00000357055	ENST00000078429		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
5UTR-intron	ENST00000357055	ENST00000586180		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
Frame-shit	ENST00000435660	ENST00000078429		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
5CDS-intron	ENST00000435660	ENST00000586180		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
Frame-shit	ENST00000282587	ENST00000078429		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
5CDS-intron	ENST00000282587	ENST00000586180		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
intron-3CDS	ENST00000406369	ENST00000078429		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
intron-intron	ENST00000406369	ENST00000586180		TCGA	LD	PRAD	TCGA-CH-5754-01A	SLC30A6	chr2	32396442	+	GNA11	chr19	3110147	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5754-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000569482	ENST00000560219		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000569482	ENST00000558723		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000569482	ENST00000341735		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000565683	ENST00000560219		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000565683	ENST00000558723		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000565683	ENST00000341735		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000563622	ENST00000560219		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000563622	ENST00000558723		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000563622	ENST00000341735		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000267978	ENST00000560219		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000267978	ENST00000558723		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-intron	ENST00000267978	ENST00000341735		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
intron-intron	ENST00000563539	ENST00000560219		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
intron-intron	ENST00000563539	ENST00000558723		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
intron-intron	ENST00000563539	ENST00000341735		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAN2C1	chr15	75649134	-	MESP2	chr15	90320379	+
5CDS-5UTR	ENST00000535772	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000535772	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000535772	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000535772	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000535772	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000535772	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000344290	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000344290	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000344290	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000344290	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000344290	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000344290	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000351559	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000351559	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000351559	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000351559	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000351559	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000351559	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5UTR-5UTR	ENST00000347967	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5UTR-5UTR	ENST00000347967	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5UTR-5UTR	ENST00000347967	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5UTR-5UTR	ENST00000347967	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5UTR-intron	ENST00000347967	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5UTR-5UTR	ENST00000347967	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000262410	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000262410	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000262410	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000262410	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000262410	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000262410	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000340799	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000340799	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000340799	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000340799	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000340799	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000340799	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
3UTR-5UTR	ENST00000570299	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
3UTR-5UTR	ENST00000570299	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
3UTR-5UTR	ENST00000570299	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
3UTR-5UTR	ENST00000570299	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
3UTR-intron	ENST00000570299	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
3UTR-5UTR	ENST00000570299	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000334239	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000334239	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000334239	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000334239	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000334239	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000334239	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000446361	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000446361	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000446361	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000446361	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000446361	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000446361	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000574436	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000574436	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000574436	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000574436	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000574436	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000574436	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000431008	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000431008	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000431008	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000431008	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000431008	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000431008	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000571987	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000571987	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000571987	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000571987	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000571987	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000571987	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000420682	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000420682	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000420682	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000420682	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000420682	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000420682	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000415613	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000415613	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000415613	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000415613	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-intron	ENST00000415613	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-5UTR	ENST00000415613	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
intron-5UTR	ENST00000576518	ENST00000293842		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
intron-5UTR	ENST00000576518	ENST00000584164		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
intron-5UTR	ENST00000576518	ENST00000582556		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
intron-5UTR	ENST00000576518	ENST00000583011		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
intron-intron	ENST00000576518	ENST00000585176		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
intron-5UTR	ENST00000576518	ENST00000578812		TCGA	LD	PRAD	TCGA-CH-5761-01A	MAPT	chr17	44039836	+	RPL26	chr17	8285633	-
5CDS-3UTR	ENST00000558939	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000558939	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000442299	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000442299	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000317509	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000317509	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000560589	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000560589	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000559929	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000559929	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000559048	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000559048	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000560939	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000560939	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000557997	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000557997	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000539550	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000539550	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000558201	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000558201	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000440567	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000440567	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
intron-3UTR	ENST00000559191	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
intron-3UTR	ENST00000559191	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000558379	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000558379	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000557907	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000557907	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000451782	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
5CDS-3UTR	ENST00000451782	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
intron-3UTR	ENST00000559574	ENST00000566432		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
intron-3UTR	ENST00000559574	ENST00000449977		TCGA	LD	PRAD	TCGA-CH-5762-01A	TLE3	chr15	70386871	-	CT62	chr15	71403765	-
Frame-shit	ENST00000264211	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
Frame-shit	ENST00000400422	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
Frame-shit	ENST00000602326	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
Frame-shit	ENST00000374935	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
Frame-shit	ENST00000374937	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
In-frame	ENST00000536266	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
intron-3CDS	ENST00000374933	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
intron-3CDS	ENST00000544689	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
intron-3CDS	ENST00000356916	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
intron-3CDS	ENST00000374927	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
Frame-shit	ENST00000537738	ENST00000392185		TCGA	LD	PRAD	TCGA-CH-5763-01A	EIF4G3	chr1	21143885	-	SNX9	chr6	158342563	+
Frame-shit	ENST00000296125	ENST00000309311		TCGA	LD	PRAD	TCGA-CH-5763-01A	TGM4	chr3	44945479	+	EEF2	chr19	3984348	-
5CDS-5UTR	ENST00000296125	ENST00000600720		TCGA	LD	PRAD	TCGA-CH-5763-01A	TGM4	chr3	44945479	+	EEF2	chr19	3984348	-
intron-3CDS	ENST00000471637	ENST00000309311		TCGA	LD	PRAD	TCGA-CH-5763-01A	TGM4	chr3	44945479	+	EEF2	chr19	3984348	-
intron-5UTR	ENST00000471637	ENST00000600720		TCGA	LD	PRAD	TCGA-CH-5763-01A	TGM4	chr3	44945479	+	EEF2	chr19	3984348	-
5UTR-3CDS	ENST00000332149	ENST00000319349		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000332149	ENST00000393664		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000538265		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545954		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000319349		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000393664		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000538265		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545954		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000319349		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000393664		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000538265		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545954		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000319349		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000393664		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000538265		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545954		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	LD	PRAD	TCGA-CH-5763-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000393593	ENST00000296741		TCGA	LD	PRAD	TCGA-CH-5764-01A	IRF2	chr4	185395533	-	ENPP6	chr4	185045425	-
5UTR-3CDS	ENST00000512020	ENST00000296741		TCGA	LD	PRAD	TCGA-CH-5764-01A	IRF2	chr4	185395533	-	ENPP6	chr4	185045425	-
Frame-shit	ENST00000360375	ENST00000263849		TCGA	LD	PRAD	TCGA-CH-5765-01A	LRRCC1	chr8	86025334	+	ZC2HC1A	chr8	79627456	+
5CDS-intron	ENST00000360375	ENST00000521176		TCGA	LD	PRAD	TCGA-CH-5765-01A	LRRCC1	chr8	86025334	+	ZC2HC1A	chr8	79627456	+
Frame-shit	ENST00000414626	ENST00000263849		TCGA	LD	PRAD	TCGA-CH-5765-01A	LRRCC1	chr8	86025334	+	ZC2HC1A	chr8	79627456	+
5CDS-intron	ENST00000414626	ENST00000521176		TCGA	LD	PRAD	TCGA-CH-5765-01A	LRRCC1	chr8	86025334	+	ZC2HC1A	chr8	79627456	+
3UTR-3CDS	ENST00000351293	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000351293	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000351293	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000351293	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000351293	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322635	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322635	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322635	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322635	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322635	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000394762	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000394762	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000394762	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000394762	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000394762	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000423381	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000423381	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000423381	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000423381	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000423381	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322680	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322680	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322680	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322680	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000322680	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000305762	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000305762	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000305762	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000305762	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000305762	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000372765	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000372765	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000372765	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000372765	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
3UTR-3CDS	ENST00000372765	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000472912	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000472912	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000472912	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000472912	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000472912	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000444854	ENST00000507754		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000444854	ENST00000252576		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000444854	ENST00000503283		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000444854	ENST00000512771		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000444854	ENST00000428459		TCGA	LD	PRAD	TCGA-CH-5766-01A	CAMK2G	chr10	75574761	-	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000368655	ENST00000366988		TCGA	LD	PRAD	TCGA-CH-5766-01A	GATAD2B	chr1	153895209	-	NENF	chr1	212615907	+
5UTR-3UTR	ENST00000368655	ENST00000473900		TCGA	LD	PRAD	TCGA-CH-5766-01A	GATAD2B	chr1	153895209	-	NENF	chr1	212615907	+
5CDS-3UTR	ENST00000425019	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000425019	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000324219	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000324219	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000350198	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000350198	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000302217	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000302217	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000413150	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000413150	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000347699	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000347699	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-3UTR	ENST00000456652	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
5CDS-intron	ENST00000456652	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
intron-3UTR	ENST00000350878	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
intron-intron	ENST00000350878	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
intron-3UTR	ENST00000498066	ENST00000360913		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
intron-intron	ENST00000498066	ENST00000585580		TCGA	LD	PRAD	TCGA-CH-5766-01A	MAP4K4	chr2	102315000	+	TSSK6	chr19	19623351	-
Frame-shit	ENST00000371953	ENST00000202677		TCGA	LD	PRAD	TCGA-CH-5766-01A	PTEN	chr10	89653866	+	RALGAPA2	chr20	20624193	-
5CDS-intron	ENST00000371953	ENST00000495793		TCGA	LD	PRAD	TCGA-CH-5766-01A	PTEN	chr10	89653866	+	RALGAPA2	chr20	20624193	-
intron-3CDS	ENST00000472832	ENST00000202677		TCGA	LD	PRAD	TCGA-CH-5766-01A	PTEN	chr10	89653866	+	RALGAPA2	chr20	20624193	-
intron-intron	ENST00000472832	ENST00000495793		TCGA	LD	PRAD	TCGA-CH-5766-01A	PTEN	chr10	89653866	+	RALGAPA2	chr20	20624193	-
5CDS-intron	ENST00000324695	ENST00000373424		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-3UTR	ENST00000324695	ENST00000480628		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-intron	ENST00000324695	ENST00000305139		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-intron	ENST00000324695	ENST00000406651		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-intron	ENST00000433712	ENST00000373424		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-3UTR	ENST00000433712	ENST00000480628		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-intron	ENST00000433712	ENST00000305139		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-intron	ENST00000433712	ENST00000406651		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000355722	ENST00000373424		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-3UTR	ENST00000355722	ENST00000480628		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000355722	ENST00000305139		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000355722	ENST00000406651		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000409625	ENST00000373424		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-3UTR	ENST00000409625	ENST00000480628		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000409625	ENST00000305139		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000409625	ENST00000406651		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000466594	ENST00000373424		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-3UTR	ENST00000466594	ENST00000480628		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000466594	ENST00000305139		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
intron-intron	ENST00000466594	ENST00000406651		TCGA	LD	PRAD	TCGA-CH-5766-01A	TRPM8	chr2	234894509	+	UGT1A6	chr2	234663336	+
5CDS-5UTR	ENST00000432306	ENST00000337018		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000432306	ENST00000452918		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000432306	ENST00000601879		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000432306	ENST00000600377		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-intron	ENST00000432306	ENST00000456085		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-intron	ENST00000432306	ENST00000598202		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000393077	ENST00000337018		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000393077	ENST00000452918		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000393077	ENST00000601879		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-5UTR	ENST00000393077	ENST00000600377		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-intron	ENST00000393077	ENST00000456085		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5CDS-intron	ENST00000393077	ENST00000598202		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
intron-5UTR	ENST00000483122	ENST00000337018		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
intron-5UTR	ENST00000483122	ENST00000452918		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
intron-5UTR	ENST00000483122	ENST00000601879		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
intron-5UTR	ENST00000483122	ENST00000600377		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
intron-intron	ENST00000483122	ENST00000456085		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
intron-intron	ENST00000483122	ENST00000598202		TCGA	LD	PRAD	TCGA-CH-5766-01A	VTI1A	chr10	114428757	+	SUGP2	chr19	19141891	-
5UTR-5UTR	ENST00000594295	ENST00000602063		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000594295	ENST00000594083		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000594295	ENST00000376716		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-intron	ENST00000594295	ENST00000391795		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000594295	ENST00000598071		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000594295	ENST00000597747		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000594295	ENST00000595114		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000426391	ENST00000602063		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000426391	ENST00000594083		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000426391	ENST00000376716		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-intron	ENST00000426391	ENST00000391795		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000426391	ENST00000598071		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000426391	ENST00000597747		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000426391	ENST00000595114		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000389534	ENST00000602063		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000389534	ENST00000594083		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000389534	ENST00000376716		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-intron	ENST00000389534	ENST00000391795		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000389534	ENST00000598071		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000389534	ENST00000597747		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-5UTR	ENST00000389534	ENST00000595114		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-5UTR	ENST00000359973	ENST00000602063		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-5UTR	ENST00000359973	ENST00000594083		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-5UTR	ENST00000359973	ENST00000376716		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-intron	ENST00000359973	ENST00000391795		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-5UTR	ENST00000359973	ENST00000598071		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-5UTR	ENST00000359973	ENST00000597747		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
intron-5UTR	ENST00000359973	ENST00000595114		TCGA	LD	PRAD	TCGA-CH-5767-01A	ZNF841	chr19	52592190	-	ZNF615	chr19	52507153	-
5UTR-3CDS	ENST00000369981	ENST00000383699		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369981	ENST00000407528		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369981	ENST00000405615		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-intron	ENST00000369981	ENST00000485126		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369985	ENST00000383699		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369985	ENST00000407528		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369985	ENST00000405615		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-intron	ENST00000369985	ENST00000485126		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369977	ENST00000383699		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369977	ENST00000407528		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000369977	ENST00000405615		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-intron	ENST00000369977	ENST00000485126		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-3CDS	ENST00000369975	ENST00000383699		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-3CDS	ENST00000369975	ENST00000407528		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-3CDS	ENST00000369975	ENST00000405615		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-intron	ENST00000369975	ENST00000485126		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-3CDS	ENST00000462633	ENST00000383699		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-3CDS	ENST00000462633	ENST00000407528		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-3CDS	ENST00000462633	ENST00000405615		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
intron-intron	ENST00000462633	ENST00000485126		TCGA	LD	PRAD	TCGA-CH-5768-01A	MYO6	chr6	76459140	+	CADM2	chr3	85851197	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-CH-5769-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000559624	ENST00000287598		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-3CDS	ENST00000559624	ENST00000412359		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-intron	ENST00000559624	ENST00000560120		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
In-frame	ENST00000382727	ENST00000287598		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
In-frame	ENST00000382727	ENST00000412359		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
5CDS-intron	ENST00000382727	ENST00000560120		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
In-frame	ENST00000263791	ENST00000287598		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
In-frame	ENST00000263791	ENST00000412359		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
5CDS-intron	ENST00000263791	ENST00000560120		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-3CDS	ENST00000560648	ENST00000287598		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-3CDS	ENST00000560648	ENST00000412359		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-intron	ENST00000560648	ENST00000560120		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-3CDS	ENST00000559311	ENST00000287598		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-3CDS	ENST00000559311	ENST00000412359		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
intron-intron	ENST00000559311	ENST00000560120		TCGA	LD	PRAD	TCGA-CH-5771-01A	EIF2AK4	chr15	40309443	+	BUB1B	chr15	40504700	+
In-frame	ENST00000237530	ENST00000337907		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000237530	ENST00000377464		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000237530	ENST00000400907		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000237530	ENST00000400908		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000237530	ENST00000476556		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000237530	ENST00000460659		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
In-frame	ENST00000373622	ENST00000337907		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000373622	ENST00000377464		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000373622	ENST00000400907		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000373622	ENST00000400908		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000373622	ENST00000476556		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
5CDS-intron	ENST00000373622	ENST00000460659		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-3CDS	ENST00000470352	ENST00000337907		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-intron	ENST00000470352	ENST00000377464		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-intron	ENST00000470352	ENST00000400907		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-intron	ENST00000470352	ENST00000400908		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-intron	ENST00000470352	ENST00000476556		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-intron	ENST00000470352	ENST00000460659		TCGA	LD	PRAD	TCGA-CH-5771-01A	RPN2	chr20	35842268	+	RERE	chr1	8617582	-
intron-5UTR	ENST00000447632	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000447632	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000447632	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000447632	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000447632	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000413473	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000413473	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000413473	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000413473	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000413473	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262675	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262675	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262675	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000262675	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262675	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000451380	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000451380	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000451380	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-3UTR	ENST00000451380	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000451380	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000371750	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000371750	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000371750	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000371750	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000371750	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000371747	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000371747	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000371747	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-3UTR	ENST00000371747	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
5CDS-5UTR	ENST00000371747	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262676	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262676	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262676	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000262676	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000262676	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000530004	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000530004	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000530004	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000530004	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000530004	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000534098	ENST00000400259		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000534098	ENST00000344548		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000534098	ENST00000315554		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-3UTR	ENST00000534098	ENST00000498236		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
intron-5UTR	ENST00000534098	ENST00000421089		TCGA	LD	PRAD	TCGA-CH-5771-01A	TTC39A	chr1	51796109	-	CDC42	chr1	22404922	+
In-frame	ENST00000333646	ENST00000338970		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
Frame-shit	ENST00000333646	ENST00000396203		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
5CDS-3UTR	ENST00000333646	ENST00000416518		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
5CDS-intron	ENST00000333646	ENST00000461368		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
In-frame	ENST00000374102	ENST00000338970		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
Frame-shit	ENST00000374102	ENST00000396203		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
5CDS-3UTR	ENST00000374102	ENST00000416518		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
5CDS-intron	ENST00000374102	ENST00000461368		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
In-frame	ENST00000374080	ENST00000338970		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
Frame-shit	ENST00000374080	ENST00000396203		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
5CDS-3UTR	ENST00000374080	ENST00000416518		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
5CDS-intron	ENST00000374080	ENST00000461368		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
intron-3CDS	ENST00000462984	ENST00000338970		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
intron-3CDS	ENST00000462984	ENST00000396203		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
intron-3UTR	ENST00000462984	ENST00000416518		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
intron-intron	ENST00000462984	ENST00000461368		TCGA	LD	PRAD	TCGA-CH-5772-01A	MED12	chrX	70361136	+	RPL14	chr3	40503560	+
intron-3CDS	ENST00000505350	ENST00000513200		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
intron-3CDS	ENST00000505350	ENST00000427991		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
intron-intron	ENST00000505350	ENST00000312498		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
intron-intron	ENST00000505350	ENST00000329378		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
In-frame	ENST00000457016	ENST00000513200		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
Frame-shit	ENST00000457016	ENST00000427991		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000457016	ENST00000312498		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000457016	ENST00000329378		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
In-frame	ENST00000257430	ENST00000513200		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
Frame-shit	ENST00000257430	ENST00000427991		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000257430	ENST00000312498		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000257430	ENST00000329378		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
In-frame	ENST00000508376	ENST00000513200		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
Frame-shit	ENST00000508376	ENST00000427991		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000508376	ENST00000312498		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5CDS-intron	ENST00000508376	ENST00000329378		TCGA	LD	PRAD	TCGA-CH-5788-01A	APC	chr5	112128226	+	KIAA0825	chr5	93489829	-
5UTR-3CDS	ENST00000361488	ENST00000518864		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
5UTR-3CDS	ENST00000361488	ENST00000522124		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
5UTR-3CDS	ENST00000361488	ENST00000517473		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
5UTR-3CDS	ENST00000361488	ENST00000276467		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
5UTR-intron	ENST00000361488	ENST00000520697		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000520369	ENST00000518864		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000520369	ENST00000522124		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000520369	ENST00000517473		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
3UTR-3CDS	ENST00000520369	ENST00000276467		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
3UTR-intron	ENST00000520369	ENST00000520697		TCGA	LD	PRAD	TCGA-CH-5788-01A	FAM110B	chr8	58944262	+	SNTG1	chr8	51503439	+
5UTR-3CDS	ENST00000310454	ENST00000259056		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
5UTR-intron	ENST00000310454	ENST00000463418		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
5UTR-3CDS	ENST00000409125	ENST00000259056		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
5UTR-intron	ENST00000409125	ENST00000463418		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-3CDS	ENST00000438166	ENST00000259056		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-intron	ENST00000438166	ENST00000463418		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-3CDS	ENST00000540309	ENST00000259056		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-intron	ENST00000540309	ENST00000463418		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-3CDS	ENST00000409674	ENST00000259056		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-intron	ENST00000409674	ENST00000463418		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-3CDS	ENST00000496190	ENST00000259056		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
intron-intron	ENST00000496190	ENST00000463418		TCGA	LD	PRAD	TCGA-CH-5788-01A	GPD2	chr2	157292316	+	GALNT5	chr2	158140794	+
Frame-shit	ENST00000336375	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
Frame-shit	ENST00000336375	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
5CDS-intron	ENST00000336375	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
Frame-shit	ENST00000475741	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
Frame-shit	ENST00000475741	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
5CDS-intron	ENST00000475741	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
In-frame	ENST00000351273	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
In-frame	ENST00000351273	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
5CDS-intron	ENST00000351273	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
intron-3CDS	ENST00000489084	ENST00000381346		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
intron-3CDS	ENST00000489084	ENST00000553384		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
intron-intron	ENST00000489084	ENST00000428130		TCGA	LD	PRAD	TCGA-CH-5789-01A	ACPP	chr3	132075699	+	RDH11	chr14	68157138	-
Frame-shit	ENST00000357613	ENST00000261497		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
Frame-shit	ENST00000357613	ENST00000537526		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
5CDS-5UTR	ENST00000357613	ENST00000455117		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000569540	ENST00000261497		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000569540	ENST00000537526		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-5UTR	ENST00000569540	ENST00000455117		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000561878	ENST00000261497		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000561878	ENST00000537526		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-5UTR	ENST00000561878	ENST00000455117		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000567796	ENST00000261497		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000567796	ENST00000537526		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-5UTR	ENST00000567796	ENST00000455117		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
In-frame	ENST00000566980	ENST00000261497		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
In-frame	ENST00000566980	ENST00000537526		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
5CDS-5UTR	ENST00000566980	ENST00000455117		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000569276	ENST00000261497		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3CDS	ENST00000569276	ENST00000537526		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-5UTR	ENST00000569276	ENST00000455117		TCGA	LD	PRAD	TCGA-CH-5790-01A	TMEM170A	chr16	75485636	-	USP22	chr17	20931987	-
intron-3UTR	ENST00000326765	ENST00000540224		TCGA	LD	PRAD	TCGA-CH-5792-01A	APOLD1	chr12	12967158	+	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000326765	ENST00000228865		TCGA	LD	PRAD	TCGA-CH-5792-01A	APOLD1	chr12	12967158	+	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000356591	ENST00000540224		TCGA	LD	PRAD	TCGA-CH-5792-01A	APOLD1	chr12	12967158	+	CREBL2	chr12	12788711	+
intron-3UTR	ENST00000356591	ENST00000228865		TCGA	LD	PRAD	TCGA-CH-5792-01A	APOLD1	chr12	12967158	+	CREBL2	chr12	12788711	+
Frame-shit	ENST00000375735	ENST00000375707		TCGA	LD	PRAD	TCGA-CH-5792-01A	DYNC2H1	chr11	103229087	+	CARD17	chr11	104970148	-
intron-3CDS	ENST00000334267	ENST00000375707		TCGA	LD	PRAD	TCGA-CH-5792-01A	DYNC2H1	chr11	103229087	+	CARD17	chr11	104970148	-
Frame-shit	ENST00000398093	ENST00000375707		TCGA	LD	PRAD	TCGA-CH-5792-01A	DYNC2H1	chr11	103229087	+	CARD17	chr11	104970148	-
intron-3CDS	ENST00000404460	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
intron-3CDS	ENST00000303908	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
In-frame	ENST00000409158	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
In-frame	ENST00000403716	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
In-frame	ENST00000234115	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
Frame-shit	ENST00000439822	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
intron-3CDS	ENST00000487980	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
intron-3CDS	ENST00000438882	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
In-frame	ENST00000538982	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
In-frame	ENST00000409612	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
In-frame	ENST00000409279	ENST00000421745		TCGA	LD	PRAD	TCGA-CH-5792-01A	PLEKHB2	chr2	131897848	+	BIRC6	chr2	32715108	+
intron-3CDS	ENST00000325642	ENST00000332981		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
intron-5UTR	ENST00000325642	ENST00000555082		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
intron-intron	ENST00000325642	ENST00000556245		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
intron-3CDS	ENST00000529574	ENST00000332981		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
intron-5UTR	ENST00000529574	ENST00000555082		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
intron-intron	ENST00000529574	ENST00000556245		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
5UTR-3CDS	ENST00000395076	ENST00000332981		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
5UTR-5UTR	ENST00000395076	ENST00000555082		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
5UTR-intron	ENST00000395076	ENST00000556245		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
5UTR-3CDS	ENST00000325658	ENST00000332981		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
5UTR-5UTR	ENST00000325658	ENST00000555082		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
5UTR-intron	ENST00000325658	ENST00000556245		TCGA	LD	PRAD	TCGA-CH-5792-01A	PPM1A	chr14	60716395	+	PRKCH	chr14	61909829	+
Frame-shit	ENST00000266712	ENST00000552864		TCGA	LD	PRAD	TCGA-CH-5792-01A	TMTC3	chr12	88542281	+	LIN7A	chr12	81205462	-
5CDS-5UTR	ENST00000375300	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000375300	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000375300	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000375300	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000292055	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000292055	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000292055	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000292055	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000375288	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000375288	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000375288	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000375288	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000434315	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000434315	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000434315	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5UTR-5UTR	ENST00000434315	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000542607	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000542607	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000542607	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000542607	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000446921	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000446921	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000446921	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000446921	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000488337	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000488337	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000488337	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000488337	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5495-01A	SIK3	chr11	116968859	-	TMPRSS2	chr21	42870116	-
5CDS-intron	ENST00000404767	ENST00000456758		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000457378		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000389574		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000452783		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000405266		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000401592		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000403868		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000425407		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000469755		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000404767	ENST00000413514		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000456758		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000457378		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000389574		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000452783		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000405266		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000401592		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000403868		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000425407		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000469755		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
5CDS-intron	ENST00000389470	ENST00000413514		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000456758		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000457378		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000389574		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000452783		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000405266		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000401592		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000403868		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000425407		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000469755		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
intron-intron	ENST00000493531	ENST00000413514		TCGA	LD	PRAD	TCGA-EJ-5497-01A	INTS1	chr7	1510482	-	SUN1	chr7	930565	+
3UTR-3CDS	ENST00000413330	ENST00000368140		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-3CDS	ENST00000413330	ENST00000368138		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000413330	ENST00000392254		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000413330	ENST00000392252		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000413330	ENST00000368135		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000413330	ENST00000485134		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
intron-3CDS	ENST00000371703	ENST00000368140		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
intron-3CDS	ENST00000371703	ENST00000368138		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
intron-intron	ENST00000371703	ENST00000392254		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
intron-intron	ENST00000371703	ENST00000392252		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
intron-intron	ENST00000371703	ENST00000368135		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
intron-intron	ENST00000371703	ENST00000485134		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-3CDS	ENST00000489806	ENST00000368140		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-3CDS	ENST00000489806	ENST00000368138		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000489806	ENST00000392254		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000489806	ENST00000392252		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000489806	ENST00000368135		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
3UTR-intron	ENST00000489806	ENST00000485134		TCGA	LD	PRAD	TCGA-EJ-5497-01A	RPP30	chr10	92663033	+	PYHIN1	chr1	158943437	+
Frame-shit	ENST00000323853	ENST00000454872		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SNRNP200	chr2	96971131	-	NAALADL2	chr3	175165017	+
5CDS-3UTR	ENST00000323853	ENST00000473253		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SNRNP200	chr2	96971131	-	NAALADL2	chr3	175165017	+
Frame-shit	ENST00000349783	ENST00000454872		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SNRNP200	chr2	96971131	-	NAALADL2	chr3	175165017	+
5CDS-3UTR	ENST00000349783	ENST00000473253		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SNRNP200	chr2	96971131	-	NAALADL2	chr3	175165017	+
In-frame	ENST00000424834	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
5CDS-intron	ENST00000424834	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
In-frame	ENST00000382108	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
5CDS-intron	ENST00000382108	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-3CDS	ENST00000382095	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-intron	ENST00000382095	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
3UTR-3CDS	ENST00000474317	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
3UTR-intron	ENST00000474317	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-3CDS	ENST00000399949	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-intron	ENST00000399949	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-3CDS	ENST00000409126	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-intron	ENST00000409126	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-3CDS	ENST00000343003	ENST00000382172		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
intron-intron	ENST00000343003	ENST00000469167		TCGA	LD	PRAD	TCGA-EJ-5497-01A	SPATA13	chr13	24798720	+	MIPEP	chr13	24384063	-
Frame-shit	ENST00000226725	ENST00000506823		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
Frame-shit	ENST00000226725	ENST00000508122		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5CDS-intron	ENST00000226725	ENST00000457021		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5CDS-intron	ENST00000226725	ENST00000511251		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
Frame-shit	ENST00000514860	ENST00000506823		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
Frame-shit	ENST00000514860	ENST00000508122		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5CDS-intron	ENST00000514860	ENST00000457021		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5CDS-intron	ENST00000514860	ENST00000511251		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-3CDS	ENST00000538127	ENST00000506823		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-3CDS	ENST00000538127	ENST00000508122		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-intron	ENST00000538127	ENST00000457021		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-intron	ENST00000538127	ENST00000511251		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-3CDS	ENST00000421009	ENST00000506823		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-3CDS	ENST00000421009	ENST00000508122		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-intron	ENST00000421009	ENST00000457021		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5UTR-intron	ENST00000421009	ENST00000511251		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-3CDS	ENST00000506761	ENST00000506823		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-3CDS	ENST00000506761	ENST00000508122		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-intron	ENST00000506761	ENST00000457021		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-intron	ENST00000506761	ENST00000511251		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-3CDS	ENST00000509028	ENST00000506823		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-3CDS	ENST00000509028	ENST00000508122		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-intron	ENST00000509028	ENST00000457021		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
intron-intron	ENST00000509028	ENST00000511251		TCGA	LD	PRAD	TCGA-EJ-5498-01A	KLHL2	chr4	166141211	+	GALNTL6	chr4	173852312	+
5CDS-5UTR	ENST00000323851	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000323851	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000323851	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000354944	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000354944	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000354944	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000521414	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000521414	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000521414	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5UTR-5UTR	ENST00000537882	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5UTR-5UTR	ENST00000537882	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5UTR-5UTR	ENST00000537882	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000414097	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000414097	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000414097	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000518176	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000518176	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000518176	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000522476	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000522476	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000522476	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000518066	ENST00000300875		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000518066	ENST00000391916		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
intron-5UTR	ENST00000518066	ENST00000410105		TCGA	LD	PRAD	TCGA-EJ-5498-01A	NDRG1	chr8	134292474	-	DACT3	chr19	47156331	-
5CDS-5UTR	ENST00000374012	ENST00000202028		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000374012	ENST00000373950		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000374012	ENST00000441639		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000374012	ENST00000373946		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000374012	ENST00000338074		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000374012	ENST00000373941		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-intron	ENST00000374012	ENST00000479336		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000439301	ENST00000202028		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000439301	ENST00000373950		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000439301	ENST00000441639		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000439301	ENST00000373946		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000439301	ENST00000338074		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-5UTR	ENST00000439301	ENST00000373941		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5CDS-intron	ENST00000439301	ENST00000479336		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-5UTR	ENST00000481202	ENST00000202028		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-5UTR	ENST00000481202	ENST00000373950		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-5UTR	ENST00000481202	ENST00000441639		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-5UTR	ENST00000481202	ENST00000373946		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-5UTR	ENST00000481202	ENST00000338074		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-5UTR	ENST00000481202	ENST00000373941		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
3UTR-intron	ENST00000481202	ENST00000479336		TCGA	LD	PRAD	TCGA-EJ-5499-01A	PHF20	chr20	34389527	+	EPB41L1	chr20	34763473	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5503-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000403729	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000403729	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000403729	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000403729	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000403729	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000482406	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000404191	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000404191	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000404191	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000404191	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000404191	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000346652	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000307333	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000295465	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-5506-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
3UTR-5UTR	ENST00000568630	ENST00000261749		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000561060		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000559157		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000558494		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000559835		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000559775		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000558688		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
3UTR-5UTR	ENST00000568630	ENST00000558087		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000261749		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000561060		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000559157		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000558494		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000559835		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000559775		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000558688		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000545763	ENST00000558087		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000261749		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000561060		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000559157		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000558494		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000559835		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000559775		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000558688		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000389936	ENST00000558087		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000261749		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000561060		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000559157		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000558494		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000559835		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000559775		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000558688		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000219905	ENST00000558087		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000261749		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000561060		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000559157		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000558494		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000559835		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000559775		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000558688		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000566586	ENST00000558087		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000261749		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000561060		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000559157		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000558494		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000559835		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000559775		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000558688		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
intron-5UTR	ENST00000570161	ENST00000558087		TCGA	LD	PRAD	TCGA-EJ-5506-01A	MGA	chr15	41913496	+	ZFAND6	chr15	80412670	+
5CDS-intron	ENST00000416426	ENST00000581852		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000416426	ENST00000403303		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000416426	ENST00000383096		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000416426	ENST00000300227		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000416426	ENST00000579916		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000416426	ENST00000406524		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000416426	ENST00000583930		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000416426	ENST00000402325		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000416426	ENST00000579947		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000416426	ENST00000583550		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000284073	ENST00000581852		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000284073	ENST00000403303		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000284073	ENST00000383096		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000284073	ENST00000300227		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000284073	ENST00000579916		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000284073	ENST00000406524		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000284073	ENST00000583930		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000284073	ENST00000402325		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000284073	ENST00000579947		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000284073	ENST00000583550		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000322684	ENST00000581852		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000322684	ENST00000403303		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000322684	ENST00000383096		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000322684	ENST00000300227		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000322684	ENST00000579916		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000322684	ENST00000406524		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000322684	ENST00000583930		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000322684	ENST00000402325		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000322684	ENST00000579947		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-5UTR	ENST00000322684	ENST00000583550		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000442934	ENST00000581852		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000442934	ENST00000403303		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000442934	ENST00000383096		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000442934	ENST00000300227		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000442934	ENST00000579916		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000442934	ENST00000406524		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000442934	ENST00000583930		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000442934	ENST00000402325		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000442934	ENST00000579947		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000442934	ENST00000583550		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579180	ENST00000581852		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579180	ENST00000403303		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579180	ENST00000383096		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579180	ENST00000300227		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579180	ENST00000579916		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579180	ENST00000406524		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579180	ENST00000583930		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579180	ENST00000402325		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579180	ENST00000579947		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579180	ENST00000583550		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579505	ENST00000581852		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579505	ENST00000403303		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579505	ENST00000383096		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579505	ENST00000300227		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579505	ENST00000579916		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579505	ENST00000406524		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579505	ENST00000583930		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-intron	ENST00000579505	ENST00000402325		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579505	ENST00000579947		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
intron-5UTR	ENST00000579505	ENST00000583550		TCGA	LD	PRAD	TCGA-EJ-5507-01A	MSI2	chr17	55339553	+	CCDC178	chr18	31020045	-
5CDS-intron	ENST00000370321	ENST00000227756		TCGA	LD	PRAD	TCGA-EJ-5507-01A	RPL5	chr1	93300470	+	GALNT18	chr11	11497999	-
5CDS-5UTR	ENST00000370321	ENST00000526064		TCGA	LD	PRAD	TCGA-EJ-5507-01A	RPL5	chr1	93300470	+	GALNT18	chr11	11497999	-
Frame-shit	ENST00000284885	ENST00000523731		TCGA	LD	PRAD	TCGA-EJ-5507-01A	TMPRSS15	chr21	19751600	-	INTS8	chr8	95844220	+
Frame-shit	ENST00000284885	ENST00000447247		TCGA	LD	PRAD	TCGA-EJ-5507-01A	TMPRSS15	chr21	19751600	-	INTS8	chr8	95844220	+
5CDS-intron	ENST00000284885	ENST00000520845		TCGA	LD	PRAD	TCGA-EJ-5507-01A	TMPRSS15	chr21	19751600	-	INTS8	chr8	95844220	+
intron-3CDS	ENST00000536230	ENST00000367384		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000536230	ENST00000367378		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000536230	ENST00000464889		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000536230	ENST00000367380		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000536230	ENST00000544496		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000536230	ENST00000480010		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000392282	ENST00000367384		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000392282	ENST00000367378		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000392282	ENST00000464889		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000392282	ENST00000367380		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000392282	ENST00000544496		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-intron	ENST00000392282	ENST00000480010		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000538427	ENST00000367384		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000538427	ENST00000367378		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000538427	ENST00000464889		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000538427	ENST00000367380		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000538427	ENST00000544496		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000538427	ENST00000480010		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000367456	ENST00000367384		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000367456	ENST00000367378		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000367456	ENST00000464889		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000367456	ENST00000367380		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000367456	ENST00000544496		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000367456	ENST00000480010		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000461481	ENST00000367384		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000461481	ENST00000367378		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000461481	ENST00000464889		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000461481	ENST00000367380		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000461481	ENST00000544496		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000461481	ENST00000480010		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000286332	ENST00000367384		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000286332	ENST00000367378		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000286332	ENST00000464889		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000286332	ENST00000367380		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000286332	ENST00000544496		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000286332	ENST00000480010		TCGA	LD	PRAD	TCGA-EJ-5508-01A	TAB2	chr6	149639151	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000594012	ENST00000295824		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
5UTR-3CDS	ENST00000594012	ENST00000344838		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
5UTR-5UTR	ENST00000594012	ENST00000498089		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
5UTR-3CDS	ENST00000595461	ENST00000295824		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
5UTR-3CDS	ENST00000595461	ENST00000344838		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
5UTR-5UTR	ENST00000595461	ENST00000498089		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000598381	ENST00000295824		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000598381	ENST00000344838		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-5UTR	ENST00000598381	ENST00000498089		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000598288	ENST00000295824		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000598288	ENST00000344838		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-5UTR	ENST00000598288	ENST00000498089		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000354959	ENST00000295824		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000354959	ENST00000344838		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-5UTR	ENST00000354959	ENST00000498089		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000599414	ENST00000295824		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-3CDS	ENST00000599414	ENST00000344838		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
intron-5UTR	ENST00000599414	ENST00000498089		TCGA	LD	PRAD	TCGA-EJ-5508-01A	ZNF43	chr19	22033740	-	EFHB	chr3	19962059	-
Frame-shit	ENST00000300176	ENST00000312891		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AGFG2	chr7	100146538	+	GJC3	chr7	99521226	-
Frame-shit	ENST00000262935	ENST00000312891		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AGFG2	chr7	100146538	+	GJC3	chr7	99521226	-
intron-3CDS	ENST00000474713	ENST00000312891		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AGFG2	chr7	100146538	+	GJC3	chr7	99521226	-
5CDS-intron	ENST00000356239	ENST00000380050		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000356239	ENST00000265741		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000356239	ENST00000406263		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000356239	ENST00000436577		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000356239	ENST00000496279		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000358100	ENST00000380050		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000358100	ENST00000265741		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000358100	ENST00000406263		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000358100	ENST00000436577		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000358100	ENST00000496279		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000359028	ENST00000380050		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000359028	ENST00000265741		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000359028	ENST00000406263		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000359028	ENST00000436577		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000359028	ENST00000496279		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000394564	ENST00000380050		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000394564	ENST00000265741		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000394564	ENST00000406263		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000394564	ENST00000436577		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
5CDS-intron	ENST00000394564	ENST00000496279		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
intron-intron	ENST00000491695	ENST00000380050		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
intron-intron	ENST00000491695	ENST00000265741		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
intron-intron	ENST00000491695	ENST00000406263		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
intron-intron	ENST00000491695	ENST00000436577		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
intron-intron	ENST00000491695	ENST00000496279		TCGA	LD	PRAD	TCGA-EJ-5509-01A	AKAP9	chr7	91570461	+	CDK14	chr7	90193049	+
In-frame	ENST00000392474	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392474	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
In-frame	ENST00000538733	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000538733	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
In-frame	ENST00000337174	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000337174	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
In-frame	ENST00000347034	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000347034	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
In-frame	ENST00000324774	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000324774	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-3CDS	ENST00000545538	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000545538	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
Frame-shit	ENST00000412367	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000412367	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000412367	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
Frame-shit	ENST00000404169	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000404169	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000404169	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
Frame-shit	ENST00000402834	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000402834	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000402834	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
In-frame	ENST00000446440	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000446440	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000446440	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
In-frame	ENST00000392473	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-5UTR	ENST00000392473	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-intron	ENST00000392473	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-3CDS	ENST00000535524	ENST00000377069		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000542973		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000377071		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000536437		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-5UTR	ENST00000535524	ENST00000538046		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	LD	PRAD	TCGA-EJ-5509-01A	CAMKK2	chr12	121711859	-	KDM2B	chr12	121932468	-
5CDS-3UTR	ENST00000371269	ENST00000257177		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-3UTR	ENST00000371269	ENST00000371544		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-intron	ENST00000371269	ENST00000371541		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-intron	ENST00000371269	ENST00000355809		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-3UTR	ENST00000537443	ENST00000257177		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-3UTR	ENST00000537443	ENST00000371544		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-intron	ENST00000537443	ENST00000371541		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-intron	ENST00000537443	ENST00000355809		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-3UTR	ENST00000535035	ENST00000257177		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-3UTR	ENST00000535035	ENST00000371544		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-intron	ENST00000535035	ENST00000371541		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5CDS-intron	ENST00000535035	ENST00000355809		TCGA	LD	PRAD	TCGA-EJ-5509-01A	DHCR24	chr1	55340766	-	ZCCHC11	chr1	52889585	-
5UTR-3UTR	ENST00000393500	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-intron	ENST00000393500	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-intron	ENST00000393500	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-intron	ENST00000393500	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000393494	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000393494	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000393494	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000393494	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000403559	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000403559	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000403559	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000403559	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000408937	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000408937	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000408937	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000408937	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000350908	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000350908	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000350908	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000350908	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000393498	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000393498	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000393498	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000393498	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-3UTR	ENST00000393489	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-intron	ENST00000393489	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-intron	ENST00000393489	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5UTR-intron	ENST00000393489	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
intron-3UTR	ENST00000393491	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
intron-intron	ENST00000393491	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
intron-intron	ENST00000393491	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
intron-intron	ENST00000393491	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
3UTR-3UTR	ENST00000459666	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
3UTR-intron	ENST00000459666	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
3UTR-intron	ENST00000459666	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
3UTR-intron	ENST00000459666	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000378237	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000378237	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000378237	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000378237	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000360232	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000360232	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000360232	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000360232	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000390668	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000390668	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000390668	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000390668	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-3UTR	ENST00000462331	ENST00000462876		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000462331	ENST00000222693		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000462331	ENST00000343213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
5CDS-intron	ENST00000462331	ENST00000393480		TCGA	LD	PRAD	TCGA-EJ-5509-01A	FOXP2	chr7	114066734	+	CAV2	chr7	116067376	+
Frame-shit	ENST00000284637	ENST00000061240		TCGA	LD	PRAD	TCGA-EJ-5509-01A	SH3RF1	chr4	170076631	-	TLL1	chr4	166946468	+
Frame-shit	ENST00000284637	ENST00000507499		TCGA	LD	PRAD	TCGA-EJ-5509-01A	SH3RF1	chr4	170076631	-	TLL1	chr4	166946468	+
Frame-shit	ENST00000284637	ENST00000513213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	SH3RF1	chr4	170076631	-	TLL1	chr4	166946468	+
5UTR-3CDS	ENST00000508685	ENST00000061240		TCGA	LD	PRAD	TCGA-EJ-5509-01A	SH3RF1	chr4	170076631	-	TLL1	chr4	166946468	+
5UTR-3CDS	ENST00000508685	ENST00000507499		TCGA	LD	PRAD	TCGA-EJ-5509-01A	SH3RF1	chr4	170076631	-	TLL1	chr4	166946468	+
5UTR-3CDS	ENST00000508685	ENST00000513213		TCGA	LD	PRAD	TCGA-EJ-5509-01A	SH3RF1	chr4	170076631	-	TLL1	chr4	166946468	+
In-frame	ENST00000389327	ENST00000342232		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000389327	ENST00000518195		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
In-frame	ENST00000389328	ENST00000342232		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000389328	ENST00000518195		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
In-frame	ENST00000438773	ENST00000342232		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000438773	ENST00000518195		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
intron-3CDS	ENST00000522504	ENST00000342232		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
intron-intron	ENST00000522504	ENST00000518195		TCGA	LD	PRAD	TCGA-EJ-5509-01A	TRAPPC9	chr8	141034034	-	JPH1	chr8	75171738	-
In-frame	ENST00000379310	ENST00000347053		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
In-frame	ENST00000379310	ENST00000297135		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
In-frame	ENST00000379310	ENST00000393603		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
5CDS-intron	ENST00000379310	ENST00000475638		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
In-frame	ENST00000281496	ENST00000347053		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
In-frame	ENST00000281496	ENST00000297135		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
In-frame	ENST00000281496	ENST00000393603		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
5CDS-intron	ENST00000281496	ENST00000475638		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
intron-3CDS	ENST00000478987	ENST00000347053		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
intron-3CDS	ENST00000478987	ENST00000297135		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
intron-3CDS	ENST00000478987	ENST00000393603		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
intron-intron	ENST00000478987	ENST00000475638		TCGA	LD	PRAD	TCGA-EJ-5510-01A	VWA8	chr13	42524072	-	COG5	chr7	107002865	-
Frame-shit	ENST00000257626	ENST00000355413		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
Frame-shit	ENST00000257626	ENST00000473247		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
5CDS-intron	ENST00000257626	ENST00000495028		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
5CDS-intron	ENST00000257626	ENST00000535825		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
5CDS-intron	ENST00000257626	ENST00000492693		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-3CDS	ENST00000441833	ENST00000355413		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-3CDS	ENST00000441833	ENST00000473247		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000441833	ENST00000495028		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000441833	ENST00000535825		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000441833	ENST00000492693		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-3CDS	ENST00000440473	ENST00000355413		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-3CDS	ENST00000440473	ENST00000473247		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000440473	ENST00000495028		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000440473	ENST00000535825		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000440473	ENST00000492693		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-3CDS	ENST00000430584	ENST00000355413		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-3CDS	ENST00000430584	ENST00000473247		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000430584	ENST00000495028		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000430584	ENST00000535825		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
intron-intron	ENST00000430584	ENST00000492693		TCGA	LD	PRAD	TCGA-EJ-5511-01A	GSAP	chr7	77026299	-	AGK	chr7	141301005	+
5UTR-intron	ENST00000429711	ENST00000550241		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000429711	ENST00000602871		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000429711	ENST00000394349		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000429711	ENST00000549164		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000429711	ENST00000338662		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000396957	ENST00000550241		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000396957	ENST00000602871		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000396957	ENST00000394349		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000396957	ENST00000549164		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000396957	ENST00000338662		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000273223	ENST00000550241		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000273223	ENST00000602871		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000273223	ENST00000394349		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000273223	ENST00000549164		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000273223	ENST00000338662		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000435983	ENST00000550241		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000435983	ENST00000602871		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000435983	ENST00000394349		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-intron	ENST00000435983	ENST00000549164		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
5UTR-5UTR	ENST00000435983	ENST00000338662		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000396953	ENST00000550241		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000396953	ENST00000602871		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000396953	ENST00000394349		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
intron-intron	ENST00000396953	ENST00000549164		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
intron-5UTR	ENST00000396953	ENST00000338662		TCGA	LD	PRAD	TCGA-EJ-5511-01A	RPL32	chr3	12882993	-	ATP5G2	chr12	54070182	-
In-frame	ENST00000457361	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000457361	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
In-frame	ENST00000342002	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000342002	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
In-frame	ENST00000434687	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000434687	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
In-frame	ENST00000374319	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000374319	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
intron-3CDS	ENST00000374327	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
intron-5UTR	ENST00000374327	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
In-frame	ENST00000451136	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000451136	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
In-frame	ENST00000413091	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000413091	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
In-frame	ENST00000421754	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5CDS-5UTR	ENST00000421754	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
intron-3CDS	ENST00000442445	ENST00000382374		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
intron-5UTR	ENST00000442445	ENST00000479790		TCGA	LD	PRAD	TCGA-EJ-5512-01A	IKZF2	chr2	213914437	-	MICU2	chr13	22069457	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5512-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000399262	ENST00000370321		TCGA	LD	PRAD	TCGA-EJ-5514-01A	JMJD1C	chr10	65140078	-	RPL5	chr1	93306108	+
intron-3CDS	ENST00000402544	ENST00000370321		TCGA	LD	PRAD	TCGA-EJ-5514-01A	JMJD1C	chr10	65140078	-	RPL5	chr1	93306108	+
5UTR-3CDS	ENST00000399251	ENST00000370321		TCGA	LD	PRAD	TCGA-EJ-5514-01A	JMJD1C	chr10	65140078	-	RPL5	chr1	93306108	+
intron-3CDS	ENST00000542921	ENST00000370321		TCGA	LD	PRAD	TCGA-EJ-5514-01A	JMJD1C	chr10	65140078	-	RPL5	chr1	93306108	+
intron-3CDS	ENST00000489372	ENST00000370321		TCGA	LD	PRAD	TCGA-EJ-5514-01A	JMJD1C	chr10	65140078	-	RPL5	chr1	93306108	+
5CDS-5UTR	ENST00000381196	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000381196	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000360074	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000360074	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000537002	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000537002	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000397617	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000397617	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000358503	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000358503	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000397611	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000397611	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000355233	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000355233	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000356435	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000356435	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000540109	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000540109	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000486161	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000486161	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000397606	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000397606	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000463477	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
5CDS-5UTR	ENST00000463477	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
intron-5UTR	ENST00000471274	ENST00000380685		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
intron-5UTR	ENST00000471274	ENST00000380683		TCGA	LD	PRAD	TCGA-EJ-5514-01A	PTPRD	chr9	8633317	-	C9orf92	chr9	16215897	-
intron-3CDS	ENST00000494373	ENST00000607452		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-3UTR	ENST00000494373	ENST00000303536		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-3UTR	ENST00000494373	ENST00000394666		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-3UTR	ENST00000494373	ENST00000606865		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-intron	ENST00000494373	ENST00000458030		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-intron	ENST00000494373	ENST00000422521		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-intron	ENST00000494373	ENST00000606082		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-intron	ENST00000494373	ENST00000406041		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
In-frame	ENST00000405123	ENST00000607452		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000405123	ENST00000303536		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000405123	ENST00000394666		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000405123	ENST00000606865		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000405123	ENST00000458030		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000405123	ENST00000422521		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000405123	ENST00000606082		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000405123	ENST00000406041		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
In-frame	ENST00000185150	ENST00000607452		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000185150	ENST00000303536		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000185150	ENST00000394666		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000185150	ENST00000606865		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000185150	ENST00000458030		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000185150	ENST00000422521		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000185150	ENST00000606082		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000185150	ENST00000406041		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
In-frame	ENST00000378239	ENST00000607452		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000378239	ENST00000303536		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000378239	ENST00000394666		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-3UTR	ENST00000378239	ENST00000606865		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000378239	ENST00000458030		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000378239	ENST00000422521		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000378239	ENST00000606082		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
5CDS-intron	ENST00000378239	ENST00000406041		TCGA	LD	PRAD	TCGA-EJ-5515-01A	ERLEC1	chr2	54028979	+	ACYP2	chr2	54531825	+
intron-intron	ENST00000249923	ENST00000217320		TCGA	LD	PRAD	TCGA-EJ-5516-01A	COPB1	chr11	14502596	-	TLDC2	chr20	35504524	+
intron-intron	ENST00000249923	ENST00000602922		TCGA	LD	PRAD	TCGA-EJ-5516-01A	COPB1	chr11	14502596	-	TLDC2	chr20	35504524	+
intron-intron	ENST00000439561	ENST00000217320		TCGA	LD	PRAD	TCGA-EJ-5516-01A	COPB1	chr11	14502596	-	TLDC2	chr20	35504524	+
intron-intron	ENST00000439561	ENST00000602922		TCGA	LD	PRAD	TCGA-EJ-5516-01A	COPB1	chr11	14502596	-	TLDC2	chr20	35504524	+
intron-intron	ENST00000526191	ENST00000217320		TCGA	LD	PRAD	TCGA-EJ-5516-01A	COPB1	chr11	14502596	-	TLDC2	chr20	35504524	+
intron-intron	ENST00000526191	ENST00000602922		TCGA	LD	PRAD	TCGA-EJ-5516-01A	COPB1	chr11	14502596	-	TLDC2	chr20	35504524	+
5UTR-3CDS	ENST00000434000	ENST00000318579		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
5UTR-3CDS	ENST00000434000	ENST00000329168		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
5UTR-3CDS	ENST00000434000	ENST00000549132		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
5UTR-5UTR	ENST00000434000	ENST00000393661		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000591680	ENST00000318579		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000591680	ENST00000329168		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000591680	ENST00000549132		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
5CDS-5UTR	ENST00000591680	ENST00000393661		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
intron-3CDS	ENST00000586265	ENST00000318579		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
intron-3CDS	ENST00000586265	ENST00000329168		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
intron-3CDS	ENST00000586265	ENST00000549132		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
intron-5UTR	ENST00000586265	ENST00000393661		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000592154	ENST00000318579		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000592154	ENST00000329168		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000592154	ENST00000549132		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
5CDS-5UTR	ENST00000592154	ENST00000393661		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000588554	ENST00000318579		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000588554	ENST00000329168		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000588554	ENST00000549132		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
5CDS-5UTR	ENST00000588554	ENST00000393661		TCGA	LD	PRAD	TCGA-EJ-5516-01A	GPATCH8	chr17	42580694	-	MEOX1	chr17	41738761	-
In-frame	ENST00000267812	ENST00000450892		TCGA	LD	PRAD	TCGA-EJ-5516-01A	MFAP1	chr15	44105185	-	STRC	chr15	43897597	-
In-frame	ENST00000267812	ENST00000541030		TCGA	LD	PRAD	TCGA-EJ-5516-01A	MFAP1	chr15	44105185	-	STRC	chr15	43897597	-
Frame-shit	ENST00000367545	ENST00000436008		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
Frame-shit	ENST00000367545	ENST00000406686		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
Frame-shit	ENST00000367545	ENST00000380302		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
Frame-shit	ENST00000367545	ENST00000490273		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
Frame-shit	ENST00000367545	ENST00000380298		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
5CDS-5UTR	ENST00000367545	ENST00000433689		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000367526	ENST00000436008		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000367526	ENST00000406686		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000367526	ENST00000380302		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000367526	ENST00000490273		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000367526	ENST00000380298		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-5UTR	ENST00000367526	ENST00000433689		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000480333	ENST00000436008		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000480333	ENST00000406686		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000480333	ENST00000380302		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000480333	ENST00000490273		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000480333	ENST00000380298		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-5UTR	ENST00000480333	ENST00000433689		TCGA	LD	PRAD	TCGA-EJ-5516-01A	UTRN	chr6	144898424	+	SLC22A23	chr6	3324236	-
intron-3CDS	ENST00000385231	ENST00000541742		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000385231	ENST00000490107		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000385231	ENST00000388985		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-5UTR	ENST00000385231	ENST00000366517		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-intron	ENST00000385231	ENST00000403792		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000385055	ENST00000541742		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000385055	ENST00000490107		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000385055	ENST00000388985		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-5UTR	ENST00000385055	ENST00000366517		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
intron-intron	ENST00000385055	ENST00000403792		TCGA	LD	PRAD	TCGA-EJ-5518-01A	C1orf132	chr1	207989274	-	SMYD3	chr1	245927451	-
Frame-shit	ENST00000367435	ENST00000367765		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
Frame-shit	ENST00000367435	ENST00000367767		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
Frame-shit	ENST00000367435	ENST00000361580		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
Frame-shit	ENST00000367435	ENST00000538366		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
5CDS-intron	ENST00000367435	ENST00000540905		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
5CDS-5UTR	ENST00000367435	ENST00000490550		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
intron-3CDS	ENST00000477868	ENST00000367765		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
intron-3CDS	ENST00000477868	ENST00000367767		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
intron-3CDS	ENST00000477868	ENST00000361580		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
intron-3CDS	ENST00000477868	ENST00000538366		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
intron-intron	ENST00000477868	ENST00000540905		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
intron-5UTR	ENST00000477868	ENST00000490550		TCGA	LD	PRAD	TCGA-EJ-5518-01A	CDC73	chr1	193181607	+	KIFAP3	chr1	170008429	-
5CDS-5UTR	ENST00000314163	ENST00000466542		TCGA	LD	PRAD	TCGA-EJ-5518-01A	GPR89B	chr1	147400691	+	FCGR2C	chr1	161551161	+
5CDS-3UTR	ENST00000314163	ENST00000473530		TCGA	LD	PRAD	TCGA-EJ-5518-01A	GPR89B	chr1	147400691	+	FCGR2C	chr1	161551161	+
5CDS-intron	ENST00000314163	ENST00000543859		TCGA	LD	PRAD	TCGA-EJ-5518-01A	GPR89B	chr1	147400691	+	FCGR2C	chr1	161551161	+
intron-5UTR	ENST00000488603	ENST00000466542		TCGA	LD	PRAD	TCGA-EJ-5518-01A	GPR89B	chr1	147400691	+	FCGR2C	chr1	161551161	+
intron-3UTR	ENST00000488603	ENST00000473530		TCGA	LD	PRAD	TCGA-EJ-5518-01A	GPR89B	chr1	147400691	+	FCGR2C	chr1	161551161	+
intron-intron	ENST00000488603	ENST00000543859		TCGA	LD	PRAD	TCGA-EJ-5518-01A	GPR89B	chr1	147400691	+	FCGR2C	chr1	161551161	+
intron-3CDS	ENST00000464356	ENST00000367996		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
intron-intron	ENST00000464356	ENST00000478394		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
intron-intron	ENST00000464356	ENST00000367995		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-3CDS	ENST00000348159	ENST00000367996		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000348159	ENST00000478394		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000348159	ENST00000367995		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-3CDS	ENST00000353795	ENST00000367996		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000353795	ENST00000478394		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000353795	ENST00000367995		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-3CDS	ENST00000340875	ENST00000367996		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000340875	ENST00000478394		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000340875	ENST00000367995		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-3CDS	ENST00000368240	ENST00000367996		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000368240	ENST00000478394		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5UTR-intron	ENST00000368240	ENST00000367995		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
intron-3CDS	ENST00000360595	ENST00000367996		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
intron-intron	ENST00000360595	ENST00000478394		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
intron-intron	ENST00000360595	ENST00000367995		TCGA	LD	PRAD	TCGA-EJ-5518-01A	MEF2D	chr1	156470278	-	ADAMTS4	chr1	161166670	-
5CDS-5UTR	ENST00000409426	ENST00000326245		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-intron	ENST00000409426	ENST00000487531		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-5UTR	ENST00000441902	ENST00000326245		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-intron	ENST00000441902	ENST00000487531		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-5UTR	ENST00000368890	ENST00000326245		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-intron	ENST00000368890	ENST00000487531		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-5UTR	ENST00000368888	ENST00000326245		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-intron	ENST00000368888	ENST00000487531		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
intron-5UTR	ENST00000464105	ENST00000326245		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
intron-intron	ENST00000464105	ENST00000487531		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
intron-5UTR	ENST00000414290	ENST00000326245		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
intron-intron	ENST00000414290	ENST00000487531		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PIP5K1A	chr1	151204841	+	ITLN1	chr1	160854673	-
5CDS-3UTR	ENST00000261461	ENST00000468573		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PPP2R5A	chr1	212459633	+	CHRM3	chr1	239656009	+
5CDS-intron	ENST00000261461	ENST00000255380		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PPP2R5A	chr1	212459633	+	CHRM3	chr1	239656009	+
intron-3UTR	ENST00000537030	ENST00000468573		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PPP2R5A	chr1	212459633	+	CHRM3	chr1	239656009	+
intron-intron	ENST00000537030	ENST00000255380		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PPP2R5A	chr1	212459633	+	CHRM3	chr1	239656009	+
intron-3UTR	ENST00000498129	ENST00000468573		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PPP2R5A	chr1	212459633	+	CHRM3	chr1	239656009	+
intron-intron	ENST00000498129	ENST00000255380		TCGA	LD	PRAD	TCGA-EJ-5518-01A	PPP2R5A	chr1	212459633	+	CHRM3	chr1	239656009	+
In-frame	ENST00000258301	ENST00000426496		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
In-frame	ENST00000258301	ENST00000392078		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
5CDS-intron	ENST00000258301	ENST00000476522		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
5CDS-intron	ENST00000258301	ENST00000367742		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
5CDS-intron	ENST00000258301	ENST00000338920		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-3CDS	ENST00000469135	ENST00000426496		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-3CDS	ENST00000469135	ENST00000392078		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-intron	ENST00000469135	ENST00000476522		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-intron	ENST00000469135	ENST00000367742		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-intron	ENST00000469135	ENST00000338920		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-3CDS	ENST00000542060	ENST00000426496		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-3CDS	ENST00000542060	ENST00000392078		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-intron	ENST00000542060	ENST00000476522		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-intron	ENST00000542060	ENST00000367742		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
intron-intron	ENST00000542060	ENST00000338920		TCGA	LD	PRAD	TCGA-EJ-5518-01A	STX6	chr1	180971742	-	PRRC2C	chr1	171560726	+
Frame-shit	ENST00000367723	ENST00000448150		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000367723	ENST00000367649		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000367723	ENST00000465723		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000367723	ENST00000462775		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000608151	ENST00000448150		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000608151	ENST00000367649		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000608151	ENST00000465723		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000608151	ENST00000462775		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000610051	ENST00000448150		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000610051	ENST00000367649		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000610051	ENST00000465723		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000610051	ENST00000462775		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000263688	ENST00000448150		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
Frame-shit	ENST00000263688	ENST00000367649		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000263688	ENST00000465723		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5CDS-intron	ENST00000263688	ENST00000462775		TCGA	LD	PRAD	TCGA-EJ-5518-01A	SUCO	chr1	172520766	+	RASAL2	chr1	178359235	+
5UTR-intron	ENST00000367612	ENST00000340979		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000367612	ENST00000368131		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000367612	ENST00000368132		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000367612	ENST00000295809		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000367612	ENST00000430894		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000367612	ENST00000359709		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000367612	ENST00000448393		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000340979		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000368131		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000368132		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000295809		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000430894		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000359709		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000609928	ENST00000448393		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000340979		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000368131		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000368132		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000295809		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000430894		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000359709		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
5UTR-intron	ENST00000482587	ENST00000448393		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TOR1AIP2	chr1	179846374	-	IFI16	chr1	159019222	+
In-frame	ENST00000353024	ENST00000358704		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TUFT1	chr1	151512902	+	ZBTB18	chr1	244217090	+
In-frame	ENST00000392712	ENST00000358704		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TUFT1	chr1	151512902	+	ZBTB18	chr1	244217090	+
In-frame	ENST00000368849	ENST00000358704		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TUFT1	chr1	151512902	+	ZBTB18	chr1	244217090	+
In-frame	ENST00000368848	ENST00000358704		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TUFT1	chr1	151512902	+	ZBTB18	chr1	244217090	+
5UTR-3CDS	ENST00000538902	ENST00000358704		TCGA	LD	PRAD	TCGA-EJ-5518-01A	TUFT1	chr1	151512902	+	ZBTB18	chr1	244217090	+
intron-intron	ENST00000385231	ENST00000468573		TCGA	LD	PRAD	TCGA-EJ-5519-01A	C1orf132	chr1	208041271	-	CHRM3	chr1	240070733	+
intron-5UTR	ENST00000385231	ENST00000255380		TCGA	LD	PRAD	TCGA-EJ-5519-01A	C1orf132	chr1	208041271	-	CHRM3	chr1	240070733	+
intron-intron	ENST00000385055	ENST00000468573		TCGA	LD	PRAD	TCGA-EJ-5519-01A	C1orf132	chr1	208041271	-	CHRM3	chr1	240070733	+
intron-5UTR	ENST00000385055	ENST00000255380		TCGA	LD	PRAD	TCGA-EJ-5519-01A	C1orf132	chr1	208041271	-	CHRM3	chr1	240070733	+
5CDS-5UTR	ENST00000381538	ENST00000437043		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-5UTR	ENST00000381538	ENST00000379904		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-5UTR	ENST00000381538	ENST00000510309		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-intron	ENST00000381538	ENST00000515095		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-5UTR	ENST00000507489	ENST00000437043		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-5UTR	ENST00000507489	ENST00000379904		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-5UTR	ENST00000507489	ENST00000510309		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-intron	ENST00000507489	ENST00000515095		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
intron-5UTR	ENST00000329043	ENST00000437043		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
intron-5UTR	ENST00000329043	ENST00000379904		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
intron-5UTR	ENST00000329043	ENST00000510309		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
intron-intron	ENST00000329043	ENST00000515095		TCGA	LD	PRAD	TCGA-EJ-5519-01A	NFXL1	chr4	47877144	-	ERAP2	chr5	96215268	+
5CDS-5UTR	ENST00000372435	ENST00000509000		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-intron	ENST00000372435	ENST00000372379		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-5UTR	ENST00000372428	ENST00000509000		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-intron	ENST00000372428	ENST00000372379		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
intron-5UTR	ENST00000372419	ENST00000509000		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
intron-intron	ENST00000372419	ENST00000372379		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-5UTR	ENST00000543248	ENST00000509000		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-intron	ENST00000543248	ENST00000372379		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-5UTR	ENST00000372418	ENST00000509000		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-intron	ENST00000372418	ENST00000372379		TCGA	LD	PRAD	TCGA-EJ-5519-01A	PRPS1	chrX	106890995	+	NCBP2L	chrX	107037379	+
5CDS-intron	ENST00000337273	ENST00000302351		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000337273	ENST00000510316		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000337273	ENST00000509284		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000337273	ENST00000537006		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000454282	ENST00000302351		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000454282	ENST00000510316		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000454282	ENST00000509284		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000454282	ENST00000537006		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
3UTR-intron	ENST00000447967	ENST00000302351		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
3UTR-intron	ENST00000447967	ENST00000510316		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
3UTR-intron	ENST00000447967	ENST00000509284		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
3UTR-intron	ENST00000447967	ENST00000537006		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000523768	ENST00000302351		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000523768	ENST00000510316		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000523768	ENST00000509284		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000523768	ENST00000537006		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
intron-intron	ENST00000513944	ENST00000302351		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
intron-intron	ENST00000513944	ENST00000510316		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
intron-intron	ENST00000513944	ENST00000509284		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
intron-intron	ENST00000513944	ENST00000537006		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000506351	ENST00000302351		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000506351	ENST00000510316		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000506351	ENST00000509284		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
5CDS-intron	ENST00000506351	ENST00000537006		TCGA	LD	PRAD	TCGA-EJ-5519-01A	TNPO1	chr5	72168547	+	ENC1	chr5	73933443	-
Frame-shit	ENST00000221130	ENST00000538486		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000221130	ENST00000397323		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000221130	ENST00000320203		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
In-frame	ENST00000221130	ENST00000287771		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000221130	ENST00000339877		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000221130	ENST00000517860		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000221130	ENST00000520161		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000221130	ENST00000519647		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000221130	ENST00000520191		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000221130	ENST00000520916		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000414019	ENST00000538486		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000414019	ENST00000397323		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000414019	ENST00000320203		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
In-frame	ENST00000414019	ENST00000287771		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000414019	ENST00000339877		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000414019	ENST00000517860		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000414019	ENST00000520161		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000414019	ENST00000519647		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000414019	ENST00000520191		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000414019	ENST00000520916		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000546342	ENST00000538486		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000546342	ENST00000397323		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000546342	ENST00000320203		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
In-frame	ENST00000546342	ENST00000287771		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000546342	ENST00000339877		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000546342	ENST00000517860		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000546342	ENST00000520161		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000546342	ENST00000519647		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000546342	ENST00000520191		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000546342	ENST00000520916		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000537535	ENST00000538486		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000537535	ENST00000397323		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000537535	ENST00000320203		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
In-frame	ENST00000537535	ENST00000287771		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000537535	ENST00000339877		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000537535	ENST00000517860		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000537535	ENST00000520161		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000537535	ENST00000519647		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000537535	ENST00000520191		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000537535	ENST00000520916		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000541648	ENST00000538486		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000541648	ENST00000397323		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
Frame-shit	ENST00000541648	ENST00000320203		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
In-frame	ENST00000541648	ENST00000287771		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000541648	ENST00000339877		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000541648	ENST00000517860		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000541648	ENST00000520161		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000541648	ENST00000519647		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000541648	ENST00000520191		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-intron	ENST00000541648	ENST00000520916		TCGA	LD	PRAD	TCGA-EJ-5521-01A	GSR	chr8	30585047	-	RBPMS	chr8	30416404	+
5CDS-3UTR	ENST00000532317	ENST00000529451		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PICALM	chr11	85779693	-	GLYATL1P2	chr11	58652379	+
5CDS-3UTR	ENST00000526033	ENST00000529451		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PICALM	chr11	85779693	-	GLYATL1P2	chr11	58652379	+
5CDS-3UTR	ENST00000393346	ENST00000529451		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PICALM	chr11	85779693	-	GLYATL1P2	chr11	58652379	+
intron-3UTR	ENST00000528398	ENST00000529451		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PICALM	chr11	85779693	-	GLYATL1P2	chr11	58652379	+
5CDS-3UTR	ENST00000356360	ENST00000529451		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PICALM	chr11	85779693	-	GLYATL1P2	chr11	58652379	+
5UTR-3UTR	ENST00000528411	ENST00000529451		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PICALM	chr11	85779693	-	GLYATL1P2	chr11	58652379	+
5CDS-intron	ENST00000371953	ENST00000433211		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
5CDS-intron	ENST00000371953	ENST00000373744		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
5CDS-intron	ENST00000371953	ENST00000545309		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
5CDS-intron	ENST00000371953	ENST00000373735		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
intron-intron	ENST00000472832	ENST00000433211		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
intron-intron	ENST00000472832	ENST00000373744		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
intron-intron	ENST00000472832	ENST00000545309		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
intron-intron	ENST00000472832	ENST00000373735		TCGA	LD	PRAD	TCGA-EJ-5521-01A	PTEN	chr10	89690846	+	CTNNA3	chr10	69038836	-
5UTR-intron	ENST00000540664	ENST00000371198		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000540664	ENST00000410012		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000540664	ENST00000344386		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000371103	ENST00000371198		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000371103	ENST00000410012		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000371103	ENST00000344386		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000356016	ENST00000371198		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000356016	ENST00000410012		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000356016	ENST00000344386		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000371097	ENST00000371198		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000371097	ENST00000410012		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-intron	ENST00000371097	ENST00000344386		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
intron-intron	ENST00000498444	ENST00000371198		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
intron-intron	ENST00000498444	ENST00000410012		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
intron-intron	ENST00000498444	ENST00000344386		TCGA	LD	PRAD	TCGA-EJ-5524-01A	LCOR	chr10	98593236	+	CC2D2B	chr10	97681773	+
5UTR-3CDS	ENST00000396950	ENST00000300738		TCGA	LD	PRAD	TCGA-EJ-5524-01A	OR51E2	chr11	4718883	-	RRM1	chr11	4123223	+
5UTR-5UTR	ENST00000396950	ENST00000423050		TCGA	LD	PRAD	TCGA-EJ-5524-01A	OR51E2	chr11	4718883	-	RRM1	chr11	4123223	+
5UTR-intron	ENST00000396950	ENST00000534285		TCGA	LD	PRAD	TCGA-EJ-5524-01A	OR51E2	chr11	4718883	-	RRM1	chr11	4123223	+
5UTR-intron	ENST00000396950	ENST00000537197		TCGA	LD	PRAD	TCGA-EJ-5524-01A	OR51E2	chr11	4718883	-	RRM1	chr11	4123223	+
5UTR-intron	ENST00000396950	ENST00000528470		TCGA	LD	PRAD	TCGA-EJ-5524-01A	OR51E2	chr11	4718883	-	RRM1	chr11	4123223	+
5CDS-intron	ENST00000249806	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000249806	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000249806	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000249806	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000249806	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000249806	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000565471	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000565471	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000565471	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000565471	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000565471	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000565471	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000418702	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000418702	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000418702	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000418702	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000418702	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000418702	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000566347	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000566347	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000566347	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000566347	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000566347	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000566347	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000538696	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000538696	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000538696	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000538696	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000538696	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000538696	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000564752	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000564752	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000564752	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000564752	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000564752	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
5CDS-intron	ENST00000564752	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000569336	ENST00000249750		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000569336	ENST00000347587		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000569336	ENST00000537372		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000569336	ENST00000558231		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000569336	ENST00000559517		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
intron-intron	ENST00000569336	ENST00000559579		TCGA	LD	PRAD	TCGA-EJ-5525-01A	CLN6	chr15	68510874	-	ALDH1A2	chr15	58458995	-
Frame-shit	ENST00000358621	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000358621	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000358621	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
In-frame	ENST00000357447	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
In-frame	ENST00000357447	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
In-frame	ENST00000357447	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000378503	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000378503	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000378503	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000342409	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000342409	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
Frame-shit	ENST00000342409	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000493380	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000493380	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000493380	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000475141	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000475141	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000475141	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000492155	ENST00000378714		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000492155	ENST00000484800		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
intron-3CDS	ENST00000492155	ENST00000378694		TCGA	LD	PRAD	TCGA-EJ-5525-01A	FRMD4A	chr10	13900847	-	MCM10	chr10	13214376	+
5UTR-3CDS	ENST00000560244	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
5UTR-3CDS	ENST00000560244	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
5UTR-3CDS	ENST00000560244	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
5UTR-intron	ENST00000560244	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
intron-3CDS	ENST00000261758	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
intron-3CDS	ENST00000261758	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
intron-3CDS	ENST00000261758	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
intron-intron	ENST00000261758	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-5525-01A	MESDC2	chr15	81271107	-	TMPRSS2	chr21	42842670	-
5UTR-5UTR	ENST00000327134	ENST00000314118		TCGA	LD	PRAD	TCGA-EJ-5525-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-5UTR	ENST00000327134	ENST00000421265		TCGA	LD	PRAD	TCGA-EJ-5525-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-5UTR	ENST00000327134	ENST00000541663		TCGA	LD	PRAD	TCGA-EJ-5525-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-3UTR	ENST00000327134	ENST00000495440		TCGA	LD	PRAD	TCGA-EJ-5525-01A	PAK2	chr3	196467028	+	PIGX	chr3	196443729	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5525-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000315930	ENST00000262982		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000315930	ENST00000542325		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000315930	ENST00000396192		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000315930	ENST00000469700		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-3CDS	ENST00000305414	ENST00000262982		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000305414	ENST00000542325		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000305414	ENST00000396192		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000305414	ENST00000469700		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-3CDS	ENST00000441825	ENST00000262982		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000441825	ENST00000542325		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000441825	ENST00000396192		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
intron-intron	ENST00000441825	ENST00000469700		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
Frame-shit	ENST00000370603	ENST00000262982		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
5CDS-intron	ENST00000370603	ENST00000542325		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
5CDS-intron	ENST00000370603	ENST00000396192		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
5CDS-intron	ENST00000370603	ENST00000469700		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
Frame-shit	ENST00000541469	ENST00000262982		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
5CDS-intron	ENST00000541469	ENST00000542325		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
5CDS-intron	ENST00000541469	ENST00000396192		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
5CDS-intron	ENST00000541469	ENST00000469700		TCGA	LD	PRAD	TCGA-EJ-5526-01A	FGF13	chrX	138286221	-	CSE1L	chr20	47683727	+
In-frame	ENST00000332149	ENST00000389054		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000520569		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000253811		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000398566		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000398562		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000398557		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000389057		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000332149	ENST00000518047		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
5CDS-5UTR	ENST00000332149	ENST00000494967		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000389054		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000520569		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000253811		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000398566		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000398562		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000398557		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000389057		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000398585	ENST00000518047		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
5CDS-5UTR	ENST00000398585	ENST00000494967		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000389054		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000520569		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000253811		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000398566		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000398562		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000398557		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000389057		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000458356	ENST00000518047		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
5CDS-5UTR	ENST00000458356	ENST00000494967		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000389054		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000520569		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000253811		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000398566		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000398562		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000398557		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000389057		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000497881	ENST00000518047		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
intron-5UTR	ENST00000497881	ENST00000494967		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42842575	-	DIAPH1	chr5	140914000	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-5526-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000378611	ENST00000345843		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
Frame-shit	ENST00000378611	ENST00000342295		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
Frame-shit	ENST00000378611	ENST00000361572		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
Frame-shit	ENST00000378611	ENST00000348160		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
Frame-shit	ENST00000378611	ENST00000355476		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
5CDS-intron	ENST00000378611	ENST00000511401		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
5CDS-intron	ENST00000378611	ENST00000507561		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
5CDS-intron	ENST00000378611	ENST00000504907		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
5CDS-intron	ENST00000378611	ENST00000342320		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000299578	ENST00000345843		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000299578	ENST00000342295		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000299578	ENST00000361572		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000299578	ENST00000348160		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000299578	ENST00000355476		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000299578	ENST00000511401		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000299578	ENST00000507561		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000299578	ENST00000504907		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000299578	ENST00000342320		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000444657	ENST00000345843		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000444657	ENST00000342295		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000444657	ENST00000361572		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000444657	ENST00000348160		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-3CDS	ENST00000444657	ENST00000355476		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000444657	ENST00000511401		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000444657	ENST00000507561		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000444657	ENST00000504907		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
intron-intron	ENST00000444657	ENST00000342320		TCGA	LD	PRAD	TCGA-EJ-5527-01A	C16orf46	chr16	81094811	-	RBPJ	chr4	26422173	+
5CDS-5UTR	ENST00000337147	ENST00000320552		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000337147	ENST00000308811		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000337147	ENST00000398612		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-3UTR	ENST00000337147	ENST00000521238		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000367075	ENST00000320552		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000367075	ENST00000308811		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000367075	ENST00000398612		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-3UTR	ENST00000367075	ENST00000521238		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000392177	ENST00000320552		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000392177	ENST00000308811		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-5UTR	ENST00000392177	ENST00000398612		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5CDS-3UTR	ENST00000392177	ENST00000521238		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5UTR-5UTR	ENST00000476189	ENST00000320552		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5UTR-5UTR	ENST00000476189	ENST00000308811		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5UTR-5UTR	ENST00000476189	ENST00000398612		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
5UTR-3UTR	ENST00000476189	ENST00000521238		TCGA	LD	PRAD	TCGA-EJ-5527-01A	EZR	chr6	159239114	-	ZNF596	chr8	190824	+
intron-5UTR	ENST00000576906	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576906	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576906	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576906	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000576906	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000576906	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576906	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000576906	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576906	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000407558	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000407558	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000407558	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000407558	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000407558	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000407558	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000407558	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000407558	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000407558	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608722	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608722	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608722	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608722	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000608722	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000608722	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608722	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000608722	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608722	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000424546	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000424546	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000424546	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000424546	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000424546	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000424546	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000424546	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000424546	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000424546	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000573580	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000573580	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000573580	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000573580	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000573580	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000573580	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000573580	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000573580	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000573580	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000421765	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000421765	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000421765	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000421765	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000421765	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000421765	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000421765	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000421765	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000421765	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000610180	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000610180	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000610180	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000610180	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000610180	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000610180	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000610180	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000610180	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000610180	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608993	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608993	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608993	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608993	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000608993	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000608993	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608993	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000608993	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000608993	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000360862	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000360862	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000360862	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000360862	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000360862	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000360862	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000360862	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000360862	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000360862	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000414063	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000414063	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000414063	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000414063	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000414063	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000414063	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000414063	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000414063	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000414063	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570551	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570551	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570551	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570551	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000570551	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000570551	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570551	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000570551	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570551	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572942	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572942	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572942	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572942	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000572942	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000572942	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572942	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000572942	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572942	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576916	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576916	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576916	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576916	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000576916	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000576916	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576916	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000576916	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000576916	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000575076	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000575076	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000575076	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000575076	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000575076	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000575076	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000575076	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000575076	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000575076	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000577013	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000577013	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000577013	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000577013	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000577013	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000577013	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000577013	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000577013	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000577013	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570819	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570819	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570819	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570819	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000570819	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000570819	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570819	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000570819	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000570819	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572584	ENST00000544564		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572584	ENST00000541571		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572584	ENST00000535424		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572584	ENST00000378799		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000572584	ENST00000538565		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000572584	ENST00000606369		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572584	ENST00000329908		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-intron	ENST00000572584	ENST00000538850		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
intron-5UTR	ENST00000572584	ENST00000378798		TCGA	LD	PRAD	TCGA-EJ-5530-01A	NAA60	chr16	3497620	+	IST1	chr16	71949529	+
5CDS-intron	ENST00000539787	ENST00000431639		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-5UTR	ENST00000539787	ENST00000316024		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000539787	ENST00000457584		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000539787	ENST00000396463		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000539787	ENST00000534050		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000345358	ENST00000431639		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-5UTR	ENST00000345358	ENST00000316024		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000345358	ENST00000457584		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000345358	ENST00000396463		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000345358	ENST00000534050		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
3UTR-intron	ENST00000391871	ENST00000431639		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
3UTR-5UTR	ENST00000391871	ENST00000316024		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
3UTR-intron	ENST00000391871	ENST00000457584		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
3UTR-intron	ENST00000391871	ENST00000396463		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
3UTR-intron	ENST00000391871	ENST00000534050		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000415969	ENST00000431639		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-5UTR	ENST00000415969	ENST00000316024		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000415969	ENST00000457584		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000415969	ENST00000396463		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000415969	ENST00000534050		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000354470	ENST00000431639		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-5UTR	ENST00000354470	ENST00000316024		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000354470	ENST00000457584		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000354470	ENST00000396463		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000354470	ENST00000534050		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000293288	ENST00000431639		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-5UTR	ENST00000293288	ENST00000316024		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000293288	ENST00000457584		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000293288	ENST00000396463		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
5CDS-intron	ENST00000293288	ENST00000534050		TCGA	LD	PRAD	TCGA-EJ-5532-01A	BAX	chr19	49459590	+	WRAP53	chr17	7589952	+
intron-3CDS	ENST00000539068	ENST00000409558		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000539068	ENST00000272322		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000539068	ENST00000354504		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000536438	ENST00000409558		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000536438	ENST00000272322		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000536438	ENST00000354504		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000357266	ENST00000409558		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000357266	ENST00000272322		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000357266	ENST00000354504		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000540787	ENST00000409558		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000540787	ENST00000272322		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000540787	ENST00000354504		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000542713	ENST00000409558		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000542713	ENST00000272322		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000542713	ENST00000354504		TCGA	LD	PRAD	TCGA-EJ-5532-01A	FKBP5	chr6	35543526	-	VPS54	chr2	64124724	-
intron-3CDS	ENST00000410042	ENST00000392347		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
intron-3CDS	ENST00000410042	ENST00000389641		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
intron-intron	ENST00000410042	ENST00000392346		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
intron-5UTR	ENST00000410042	ENST00000327026		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
intron-5UTR	ENST00000410042	ENST00000392343		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-3CDS	ENST00000338148	ENST00000392347		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-3CDS	ENST00000338148	ENST00000389641		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-intron	ENST00000338148	ENST00000392346		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-5UTR	ENST00000338148	ENST00000327026		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-5UTR	ENST00000338148	ENST00000392343		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-3CDS	ENST00000409145	ENST00000392347		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-3CDS	ENST00000409145	ENST00000389641		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-intron	ENST00000409145	ENST00000392346		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-5UTR	ENST00000409145	ENST00000327026		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
5UTR-5UTR	ENST00000409145	ENST00000392343		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
3UTR-3CDS	ENST00000465432	ENST00000392347		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
3UTR-3CDS	ENST00000465432	ENST00000389641		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
3UTR-intron	ENST00000465432	ENST00000392346		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
3UTR-5UTR	ENST00000465432	ENST00000327026		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
3UTR-5UTR	ENST00000465432	ENST00000392343		TCGA	LD	PRAD	TCGA-EJ-5532-01A	MRPL30	chr2	99797712	+	CCDC57	chr17	80115824	-
Frame-shit	ENST00000330687	ENST00000413021		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
Frame-shit	ENST00000330687	ENST00000219345		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
Frame-shit	ENST00000330687	ENST00000566188		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
In-frame	ENST00000330687	ENST00000444212		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
5CDS-intron	ENST00000330687	ENST00000568599		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000394106	ENST00000413021		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000394106	ENST00000219345		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000394106	ENST00000566188		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000394106	ENST00000444212		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-intron	ENST00000394106	ENST00000568599		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000563952	ENST00000413021		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000563952	ENST00000219345		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000563952	ENST00000566188		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-3CDS	ENST00000563952	ENST00000444212		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
intron-intron	ENST00000563952	ENST00000568599		TCGA	LD	PRAD	TCGA-EJ-5542-01A	CMTM4	chr16	66655965	-	PLA2G15	chr16	68293049	+
In-frame	ENST00000403729	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000403729	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000403729	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000403729	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000403729	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000482406	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000482406	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000404191	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000404191	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000404191	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000404191	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000404191	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000346652	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000346652	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000307333	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000307333	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000295465	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000295465	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7125-01A	ANTXR2	chr4	80898775	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000233609	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000233609	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000586686	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000586686	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
5UTR-3CDS	ENST00000591032	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
5UTR-3CDS	ENST00000591032	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000589656	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000589656	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000593052	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000593052	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
5UTR-3CDS	ENST00000591804	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
5UTR-3CDS	ENST00000591804	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000586096	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
Frame-shit	ENST00000586096	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
5UTR-3CDS	ENST00000585665	ENST00000395425		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
5UTR-3CDS	ENST00000585665	ENST00000247191		TCGA	LD	PRAD	TCGA-EJ-7125-01A	RPS15	chr19	1438891	+	DLGAP5	chr14	55617566	-
intron-3CDS	ENST00000290902	ENST00000309311		TCGA	LD	PRAD	TCGA-EJ-7125-01A	SPON2	chr4	1201668	-	EEF2	chr19	3984348	-
intron-5UTR	ENST00000290902	ENST00000600720		TCGA	LD	PRAD	TCGA-EJ-7125-01A	SPON2	chr4	1201668	-	EEF2	chr19	3984348	-
intron-3CDS	ENST00000431380	ENST00000309311		TCGA	LD	PRAD	TCGA-EJ-7125-01A	SPON2	chr4	1201668	-	EEF2	chr19	3984348	-
intron-5UTR	ENST00000431380	ENST00000600720		TCGA	LD	PRAD	TCGA-EJ-7125-01A	SPON2	chr4	1201668	-	EEF2	chr19	3984348	-
intron-3CDS	ENST00000400762	ENST00000309311		TCGA	LD	PRAD	TCGA-EJ-7125-01A	SPON2	chr4	1201668	-	EEF2	chr19	3984348	-
intron-5UTR	ENST00000400762	ENST00000600720		TCGA	LD	PRAD	TCGA-EJ-7125-01A	SPON2	chr4	1201668	-	EEF2	chr19	3984348	-
Frame-shit	ENST00000311635	ENST00000219473		TCGA	LD	PRAD	TCGA-EJ-7218-01B	FBXO31	chr16	87417011	-	USP10	chr16	84797692	+
Frame-shit	ENST00000311635	ENST00000570191		TCGA	LD	PRAD	TCGA-EJ-7218-01B	FBXO31	chr16	87417011	-	USP10	chr16	84797692	+
5CDS-intron	ENST00000311635	ENST00000562743		TCGA	LD	PRAD	TCGA-EJ-7218-01B	FBXO31	chr16	87417011	-	USP10	chr16	84797692	+
5UTR-3CDS	ENST00000563956	ENST00000219473		TCGA	LD	PRAD	TCGA-EJ-7218-01B	FBXO31	chr16	87417011	-	USP10	chr16	84797692	+
5UTR-3CDS	ENST00000563956	ENST00000570191		TCGA	LD	PRAD	TCGA-EJ-7218-01B	FBXO31	chr16	87417011	-	USP10	chr16	84797692	+
5UTR-intron	ENST00000563956	ENST00000562743		TCGA	LD	PRAD	TCGA-EJ-7218-01B	FBXO31	chr16	87417011	-	USP10	chr16	84797692	+
In-frame	ENST00000323851	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000323851	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000323851	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7314-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-5UTR	ENST00000445937	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000531443	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000517566	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000452423	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000442977	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000521963	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
5CDS-5UTR	ENST00000312046	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000449762	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000297447	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000521592	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000497705	ENST00000520268		TCGA	LD	PRAD	TCGA-EJ-7314-01A	OXR1	chr8	107670413	+	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000441493	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000441493	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000441493	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000441493	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000441493	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000400561	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000400561	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000444520	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000444520	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000444520	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000444520	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000444520	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000414725	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000414725	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000383094	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000383094	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000207726	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000207726	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000207726	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000207726	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000207726	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000429452	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000429452	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000429452	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000429452	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000429452	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000585038	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000585038	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000308448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000328142		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-intron	ENST00000580469	ENST00000400215		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000541004		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
intron-5UTR	ENST00000580469	ENST00000495903		TCGA	LD	PRAD	TCGA-EJ-7315-01A	MICAL3	chr22	18484159	-	ATAD1	chr10	89574369	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000283943	ENST00000482518		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000283943	ENST00000392054		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000283943	ENST00000409462		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000283943	ENST00000392055		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000283943	ENST00000354069		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-5UTR	ENST00000389045	ENST00000482518		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389045	ENST00000392054		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389045	ENST00000409462		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389045	ENST00000392055		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389045	ENST00000354069		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-5UTR	ENST00000389044	ENST00000482518		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389044	ENST00000392054		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389044	ENST00000409462		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389044	ENST00000392055		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
5CDS-intron	ENST00000389044	ENST00000354069		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-5UTR	ENST00000543084	ENST00000482518		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000543084	ENST00000392054		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000543084	ENST00000409462		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000543084	ENST00000392055		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000543084	ENST00000354069		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-5UTR	ENST00000409677	ENST00000482518		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000409677	ENST00000392054		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000409677	ENST00000409462		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000409677	ENST00000392055		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
intron-intron	ENST00000409677	ENST00000354069		TCGA	LD	PRAD	TCGA-EJ-7315-01A	TRIP12	chr2	230642031	-	PID1	chr2	229715364	-
Frame-shit	ENST00000279550	ENST00000549982		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
Frame-shit	ENST00000279550	ENST00000361630		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
Frame-shit	ENST00000279550	ENST00000552217		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000279550	ENST00000393128		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000279550	ENST00000547098		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000279550	ENST00000548545		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000279550	ENST00000552938		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
Frame-shit	ENST00000228251	ENST00000549982		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
Frame-shit	ENST00000228251	ENST00000361630		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
Frame-shit	ENST00000228251	ENST00000552217		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000228251	ENST00000393128		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000228251	ENST00000547098		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000228251	ENST00000548545		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000228251	ENST00000552938		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000546164	ENST00000549982		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000546164	ENST00000361630		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000546164	ENST00000552217		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-intron	ENST00000546164	ENST00000393128		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-intron	ENST00000546164	ENST00000547098		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-intron	ENST00000546164	ENST00000548545		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
intron-intron	ENST00000546164	ENST00000552938		TCGA	LD	PRAD	TCGA-EJ-7315-01A	YBX3	chr12	10875449	-	MRPL42	chr12	93894952	+
Frame-shit	ENST00000409466	ENST00000327097		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
Frame-shit	ENST00000409466	ENST00000541757		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
Frame-shit	ENST00000334816	ENST00000327097		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
Frame-shit	ENST00000334816	ENST00000541757		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
Frame-shit	ENST00000409877	ENST00000327097		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
Frame-shit	ENST00000409877	ENST00000541757		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
In-frame	ENST00000409523	ENST00000327097		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
In-frame	ENST00000409523	ENST00000541757		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
5UTR-3CDS	ENST00000498049	ENST00000327097		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
5UTR-3CDS	ENST00000498049	ENST00000541757		TCGA	LD	PRAD	TCGA-EJ-7317-01A	C2orf76	chr2	120097403	-	MARCO	chr2	119739732	+
Frame-shit	ENST00000392314	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000392314	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000392314	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000392314	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000392314	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000272771	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000272771	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000272771	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000272771	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000272771	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000487771	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000397901		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000253475		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000535997		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000550102		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000409056	ENST00000547614		TCGA	LD	PRAD	TCGA-EJ-7318-01B	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000378330	ENST00000262193		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
5UTR-5UTR	ENST00000378330	ENST00000462957		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
5UTR-3CDS	ENST00000301030	ENST00000262193		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
5UTR-5UTR	ENST00000301030	ENST00000462957		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
intron-3CDS	ENST00000563291	ENST00000262193		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
intron-5UTR	ENST00000563291	ENST00000462957		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
intron-3CDS	ENST00000567736	ENST00000262193		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
intron-5UTR	ENST00000567736	ENST00000462957		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ANKRD11	chr16	89556653	-	PSMB1	chr6	170858201	-
In-frame	ENST00000371269	ENST00000539068		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000371269	ENST00000536438		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000371269	ENST00000357266		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000371269	ENST00000540787		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000371269	ENST00000542713		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
Frame-shit	ENST00000537443	ENST00000539068		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
Frame-shit	ENST00000537443	ENST00000536438		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
Frame-shit	ENST00000537443	ENST00000357266		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
Frame-shit	ENST00000537443	ENST00000540787		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
Frame-shit	ENST00000537443	ENST00000542713		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000535035	ENST00000539068		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000535035	ENST00000536438		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000535035	ENST00000357266		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000535035	ENST00000540787		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
In-frame	ENST00000535035	ENST00000542713		TCGA	LD	PRAD	TCGA-EJ-7321-01A	DHCR24	chr1	55340766	-	FKBP5	chr6	35554894	-
intron-intron	ENST00000423113	ENST00000360890		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-3UTR	ENST00000423113	ENST00000413659		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-3UTR	ENST00000423113	ENST00000325239		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-intron	ENST00000423113	ENST00000465910		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-intron	ENST00000396033	ENST00000360890		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-3UTR	ENST00000396033	ENST00000413659		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-3UTR	ENST00000396033	ENST00000325239		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
intron-intron	ENST00000396033	ENST00000465910		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-intron	ENST00000302278	ENST00000360890		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-3UTR	ENST00000302278	ENST00000413659		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-3UTR	ENST00000302278	ENST00000325239		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-intron	ENST00000302278	ENST00000465910		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-intron	ENST00000374956	ENST00000360890		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-3UTR	ENST00000374956	ENST00000413659		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-3UTR	ENST00000374956	ENST00000325239		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-intron	ENST00000374956	ENST00000465910		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-intron	ENST00000484088	ENST00000360890		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-3UTR	ENST00000484088	ENST00000413659		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-3UTR	ENST00000484088	ENST00000325239		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
5UTR-intron	ENST00000484088	ENST00000465910		TCGA	LD	PRAD	TCGA-EJ-7321-01A	ITGB1	chr10	33247073	-	WDFY4	chr10	50105499	+
Frame-shit	ENST00000281394	ENST00000389394		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
Frame-shit	ENST00000281394	ENST00000237449		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000281394	ENST00000398278		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000281394	ENST00000468661		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000281394	ENST00000602588		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
Frame-shit	ENST00000294952	ENST00000389394		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
Frame-shit	ENST00000294952	ENST00000237449		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000294952	ENST00000398278		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000294952	ENST00000468661		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000294952	ENST00000602588		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
Frame-shit	ENST00000449090	ENST00000389394		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
Frame-shit	ENST00000449090	ENST00000237449		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000449090	ENST00000398278		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000449090	ENST00000468661		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
5CDS-intron	ENST00000449090	ENST00000602588		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
intron-3CDS	ENST00000476199	ENST00000389394		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
intron-3CDS	ENST00000476199	ENST00000237449		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
intron-intron	ENST00000476199	ENST00000398278		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
intron-intron	ENST00000476199	ENST00000468661		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
intron-intron	ENST00000476199	ENST00000602588		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PPP1R21	chr2	48692781	+	DNAH6	chr2	85046429	+
Frame-shit	ENST00000295874	ENST00000383710		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
Frame-shit	ENST00000295874	ENST00000357948		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
Frame-shit	ENST00000295874	ENST00000283269		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
5CDS-intron	ENST00000295874	ENST00000490353		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
5CDS-intron	ENST00000295874	ENST00000462768		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
Frame-shit	ENST00000474889	ENST00000383710		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
Frame-shit	ENST00000474889	ENST00000357948		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
Frame-shit	ENST00000474889	ENST00000283269		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
5CDS-intron	ENST00000474889	ENST00000490353		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
5CDS-intron	ENST00000474889	ENST00000462768		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
3UTR-3CDS	ENST00000495879	ENST00000383710		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
3UTR-3CDS	ENST00000495879	ENST00000357948		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
3UTR-3CDS	ENST00000495879	ENST00000283269		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
3UTR-intron	ENST00000495879	ENST00000490353		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
3UTR-intron	ENST00000495879	ENST00000462768		TCGA	LD	PRAD	TCGA-EJ-7321-01A	PTPRG	chr3	61548046	+	CADPS	chr3	62578423	-
In-frame	ENST00000305997	ENST00000327435		TCGA	LD	PRAD	TCGA-EJ-7325-01B	MBOAT2	chr2	9143669	-	ADI1	chr2	3504764	-
In-frame	ENST00000305997	ENST00000382093		TCGA	LD	PRAD	TCGA-EJ-7325-01B	MBOAT2	chr2	9143669	-	ADI1	chr2	3504764	-
5UTR-3CDS	ENST00000486484	ENST00000327435		TCGA	LD	PRAD	TCGA-EJ-7325-01B	MBOAT2	chr2	9143669	-	ADI1	chr2	3504764	-
5UTR-3CDS	ENST00000486484	ENST00000382093		TCGA	LD	PRAD	TCGA-EJ-7325-01B	MBOAT2	chr2	9143669	-	ADI1	chr2	3504764	-
intron-intron	ENST00000398907	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000398907	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000398905	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000398905	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000288319	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000288319	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5UTR-intron	ENST00000398897	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5UTR-intron	ENST00000398897	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000398911	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000398911	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000398910	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000398910	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000417133	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000417133	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000442448	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000442448	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000453032	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000453032	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000398919	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5CDS-intron	ENST00000398919	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000429727	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
intron-intron	ENST00000429727	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5UTR-intron	ENST00000485493	ENST00000425639		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
5UTR-intron	ENST00000485493	ENST00000400404		TCGA	LD	PRAD	TCGA-EJ-7327-01A	ERG	chr21	39947586	-	SKOR2	chr18	44775601	-
3UTR-intron	ENST00000329841	ENST00000351097		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000329841	ENST00000285679		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000329841	ENST00000285681		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000329841	ENST00000400183		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000329841	ENST00000547201		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000346623	ENST00000351097		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000346623	ENST00000285679		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000346623	ENST00000285681		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000346623	ENST00000400183		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
3UTR-intron	ENST00000346623	ENST00000547201		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000557963	ENST00000351097		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000557963	ENST00000285679		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000557963	ENST00000285681		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000557963	ENST00000400183		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000557963	ENST00000547201		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000560555	ENST00000351097		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000560555	ENST00000285679		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000560555	ENST00000285681		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000560555	ENST00000400183		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000560555	ENST00000547201		TCGA	LD	PRAD	TCGA-EJ-7328-01A	ALDH1A3	chr15	101455479	+	USP25	chr21	17205667	+
intron-intron	ENST00000370096	ENST00000370105		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000370096	ENST00000370109		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000370096	ENST00000427040		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000370096	ENST00000342173		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000370096	ENST00000488176		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000353414	ENST00000370105		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000353414	ENST00000370109		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000353414	ENST00000427040		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000353414	ENST00000342173		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000353414	ENST00000488176		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000358392	ENST00000370105		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000358392	ENST00000370109		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000358392	ENST00000427040		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000358392	ENST00000342173		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000358392	ENST00000488176		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000512756	ENST00000370105		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000512756	ENST00000370109		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000512756	ENST00000427040		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000512756	ENST00000342173		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000512756	ENST00000488176		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000461720	ENST00000370105		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000461720	ENST00000370109		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000461720	ENST00000427040		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000461720	ENST00000342173		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
intron-intron	ENST00000461720	ENST00000488176		TCGA	LD	PRAD	TCGA-EJ-7330-01A	COL11A1	chr1	103352466	-	DPH5	chr1	101491617	-
5CDS-5UTR	ENST00000371117	ENST00000488834		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000474597		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000244763		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000397511		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000534851		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000489567		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000479365		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000371117	ENST00000462112		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-5UTR	ENST00000340994	ENST00000488834		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000474597		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000244763		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000397511		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000534851		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000489567		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000479365		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
5CDS-intron	ENST00000340994	ENST00000462112		TCGA	LD	PRAD	TCGA-EJ-7782-01A	PKHD1	chr6	51875107	-	SSR1	chr6	7334323	-
Frame-shit	ENST00000264235	ENST00000358595		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000264235	ENST00000354396		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000264235	ENST00000515192		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000264235	ENST00000505755		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5CDS-intron	ENST00000264235	ENST00000468970		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000316626	ENST00000358595		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000316626	ENST00000354396		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000316626	ENST00000515192		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
Frame-shit	ENST00000316626	ENST00000505755		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5CDS-intron	ENST00000316626	ENST00000468970		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5UTR-3CDS	ENST00000473886	ENST00000358595		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5UTR-3CDS	ENST00000473886	ENST00000354396		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5UTR-3CDS	ENST00000473886	ENST00000515192		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5UTR-3CDS	ENST00000473886	ENST00000505755		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5UTR-intron	ENST00000473886	ENST00000468970		TCGA	LD	PRAD	TCGA-EJ-7783-01A	GSK3B	chr3	119582266	-	ARNT	chr1	150790506	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7783-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000542213	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000542213	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000542213	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
5CDS-intron	ENST00000542213	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-3CDS	ENST00000370125	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-3CDS	ENST00000370125	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-3CDS	ENST00000370125	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-intron	ENST00000370125	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000361544	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000361544	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000361544	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
5CDS-intron	ENST00000361544	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000370124	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000370124	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000370124	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
5CDS-intron	ENST00000370124	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000336454	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000336454	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000336454	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
5CDS-intron	ENST00000336454	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000544534	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000544534	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
In-frame	ENST00000544534	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
5CDS-intron	ENST00000544534	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-3CDS	ENST00000469387	ENST00000371084		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-3CDS	ENST00000469387	ENST00000540265		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-3CDS	ENST00000469387	ENST00000371083		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
intron-intron	ENST00000469387	ENST00000483707		TCGA	LD	PRAD	TCGA-EJ-7784-01A	CDC14A	chr1	100921048	+	PGM1	chr1	64114188	+
5UTR-intron	ENST00000434000	ENST00000373297		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5UTR-intron	ENST00000434000	ENST00000314607		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5UTR-intron	ENST00000434000	ENST00000482131		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000591680	ENST00000373297		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000591680	ENST00000314607		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000591680	ENST00000482131		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
intron-intron	ENST00000586265	ENST00000373297		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
intron-intron	ENST00000586265	ENST00000314607		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
intron-intron	ENST00000586265	ENST00000482131		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000592154	ENST00000373297		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000592154	ENST00000314607		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000592154	ENST00000482131		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000588554	ENST00000373297		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000588554	ENST00000314607		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
5CDS-intron	ENST00000588554	ENST00000482131		TCGA	LD	PRAD	TCGA-EJ-7784-01A	GPATCH8	chr17	42580694	-	ZMYM4	chr1	35761528	+
Frame-shit	ENST00000272091	ENST00000369503		TCGA	LD	PRAD	TCGA-EJ-7784-01A	SDE2	chr1	226182967	-	SLC22A15	chr1	116562203	+
Frame-shit	ENST00000272091	ENST00000369502		TCGA	LD	PRAD	TCGA-EJ-7784-01A	SDE2	chr1	226182967	-	SLC22A15	chr1	116562203	+
5CDS-intron	ENST00000272091	ENST00000481127		TCGA	LD	PRAD	TCGA-EJ-7784-01A	SDE2	chr1	226182967	-	SLC22A15	chr1	116562203	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7785-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
Frame-shit	ENST00000370203	ENST00000370189		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
Frame-shit	ENST00000370203	ENST00000529992		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
In-frame	ENST00000370203	ENST00000306121		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
5CDS-intron	ENST00000370203	ENST00000473868		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
intron-3CDS	ENST00000463375	ENST00000370189		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
intron-3CDS	ENST00000463375	ENST00000529992		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
intron-3CDS	ENST00000463375	ENST00000306121		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
intron-intron	ENST00000463375	ENST00000473868		TCGA	LD	PRAD	TCGA-EJ-7789-01A	TMEM56	chr1	95616975	+	SNX7	chr1	99225610	+
5UTR-3CDS	ENST00000315677	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-3CDS	ENST00000315677	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-5UTR	ENST00000315677	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000315677	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000315677	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000315677	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000315677	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000315677	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-3CDS	ENST00000581527	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-3CDS	ENST00000581527	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-5UTR	ENST00000581527	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000581527	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000581527	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000581527	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000581527	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000581527	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400147	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400147	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000400147	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400147	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400147	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400147	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400147	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400147	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400149	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400149	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000400149	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400149	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400149	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400149	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400149	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400149	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400155	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400155	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000400155	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400155	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400155	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400155	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400155	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400155	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400150	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400150	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000400150	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400150	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400150	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400150	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400150	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400150	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000584874	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000584874	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000584874	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000584874	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000584874	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000584874	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000584874	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000584874	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000534970	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000534970	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000534970	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000534970	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000534970	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000534970	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000534970	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000534970	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000539435	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000539435	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000539435	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000539435	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000539435	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000539435	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000539435	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000539435	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000581699	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000581699	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000581699	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000581699	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000581699	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000581699	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000581699	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000581699	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400145	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000400145	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000400145	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400145	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400145	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400145	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400145	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000400145	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000515196	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000515196	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000515196	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000515196	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000515196	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000515196	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000515196	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000515196	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000478161	ENST00000383472		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000478161	ENST00000400091		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-5UTR	ENST00000478161	ENST00000262227		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000478161	ENST00000419673		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000478161	ENST00000531294		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000478161	ENST00000418986		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000478161	ENST00000314319		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-intron	ENST00000478161	ENST00000532996		TCGA	LD	PRAD	TCGA-EJ-7791-01A	DLGAP1	chr18	4455006	-	ARHGAP28	chr18	6824761	+
intron-3CDS	ENST00000398907	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000398907	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000398907	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000398907	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000398905	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000398905	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000398905	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000398905	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000288319	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000288319	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000288319	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000288319	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-3CDS	ENST00000398897	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-3CDS	ENST00000398897	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-3CDS	ENST00000398897	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-intron	ENST00000398897	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
In-frame	ENST00000398911	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
In-frame	ENST00000398911	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
In-frame	ENST00000398911	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5CDS-intron	ENST00000398911	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000398910	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000398910	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000398910	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5CDS-intron	ENST00000398910	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000417133	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000417133	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000417133	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5CDS-intron	ENST00000417133	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000442448	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000442448	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000442448	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5CDS-intron	ENST00000442448	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000453032	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000453032	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000453032	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000453032	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
In-frame	ENST00000398919	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
In-frame	ENST00000398919	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
In-frame	ENST00000398919	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5CDS-intron	ENST00000398919	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000429727	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000429727	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000429727	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000429727	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-3CDS	ENST00000485493	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-3CDS	ENST00000485493	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-3CDS	ENST00000485493	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
5UTR-intron	ENST00000485493	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-7793-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000513024	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000513024	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000513024	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000513024	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000513024	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000513024	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000513024	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000513024	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000513024	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-3CDS	ENST00000509638	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-3CDS	ENST00000509638	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-3CDS	ENST00000509638	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-3CDS	ENST00000509638	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-intron	ENST00000509638	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-intron	ENST00000509638	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-intron	ENST00000509638	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-intron	ENST00000509638	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-intron	ENST00000509638	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000508501	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000508501	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000508501	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000508501	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000508501	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000508501	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000508501	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000508501	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000508501	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512946	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512946	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512946	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512946	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512946	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512946	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512946	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512946	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512946	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000313860	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000313860	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000313860	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000313860	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000313860	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000313860	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000313860	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000313860	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000313860	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512632	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512632	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512632	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512632	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512632	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512632	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512632	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512632	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512632	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512820	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512820	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512820	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
Frame-shit	ENST00000512820	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512820	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512820	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512820	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512820	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5CDS-intron	ENST00000512820	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000503057	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000503057	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000503057	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000503057	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000503057	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000503057	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000503057	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000503057	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000503057	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000511496	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000511496	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000511496	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000511496	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000511496	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000511496	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000511496	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000511496	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000511496	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000514096	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000514096	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000514096	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000514096	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000514096	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000514096	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000514096	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000514096	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000514096	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509277	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509277	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509277	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509277	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509277	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509277	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509277	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509277	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509277	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000396595	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000396595	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000396595	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000396595	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000396595	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000396595	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000396595	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000396595	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000396595	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000381753	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000381753	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000381753	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000381753	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000381753	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000381753	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000381753	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000381753	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000381753	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509454	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509454	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509454	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000509454	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509454	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509454	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509454	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509454	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000509454	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000515785	ENST00000452533		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000515785	ENST00000553257		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000515785	ENST00000549701		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-3CDS	ENST00000515785	ENST00000358214		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000515785	ENST00000548671		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000515785	ENST00000266481		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000515785	ENST00000547312		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000515785	ENST00000414834		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
intron-intron	ENST00000515785	ENST00000381000		TCGA	LD	PRAD	TCGA-EJ-7793-01A	LIMCH1	chr4	41362953	+	DNM1L	chr12	32875361	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-7793-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000284770	ENST00000296741		TCGA	LD	PRAD	TCGA-EJ-7794-01A	PDLIM3	chr4	186456496	-	ENPP6	chr4	185074886	-
Frame-shit	ENST00000284771	ENST00000296741		TCGA	LD	PRAD	TCGA-EJ-7794-01A	PDLIM3	chr4	186456496	-	ENPP6	chr4	185074886	-
Frame-shit	ENST00000284767	ENST00000296741		TCGA	LD	PRAD	TCGA-EJ-7794-01A	PDLIM3	chr4	186456496	-	ENPP6	chr4	185074886	-
In-frame	ENST00000357573	ENST00000344771		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000357573	ENST00000395059		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000357573	ENST00000262518		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000358201	ENST00000344771		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000358201	ENST00000395059		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000358201	ENST00000262518		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000544477	ENST00000344771		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000544477	ENST00000395059		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
In-frame	ENST00000544477	ENST00000262518		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
5UTR-3CDS	ENST00000561803	ENST00000344771		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
5UTR-3CDS	ENST00000561803	ENST00000395059		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
5UTR-3CDS	ENST00000561803	ENST00000262518		TCGA	LD	PRAD	TCGA-EJ-7794-01A	RABEP2	chr16	28931107	-	SRCAP	chr16	30740287	+
5UTR-3CDS	ENST00000412723	ENST00000419071		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000412723	ENST00000268835		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000412723	ENST00000536323		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000412723	ENST00000542013		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3UTR	ENST00000412723	ENST00000575337		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000443835	ENST00000419071		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000443835	ENST00000268835		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000443835	ENST00000536323		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3CDS	ENST00000443835	ENST00000542013		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
5UTR-3UTR	ENST00000443835	ENST00000575337		TCGA	LD	PRAD	TCGA-EJ-7797-01A	PIGZ	chr3	196695558	-	PRPSAP2	chr17	18793135	+
intron-3CDS	ENST00000337414	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000337414	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000337414	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000337414	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000337414	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380718	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380718	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380718	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380718	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000380718	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380732	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380732	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380732	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000380732	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000380732	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000534860	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000534860	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000534860	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000534860	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000534860	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
5UTR-3CDS	ENST00000380736	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
5UTR-3CDS	ENST00000380736	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
5UTR-3CDS	ENST00000380736	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
5UTR-3CDS	ENST00000380736	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
5UTR-intron	ENST00000380736	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000303025	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000303025	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000303025	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000303025	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000303025	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000413512	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000413512	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000413512	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000413512	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000413512	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000491514	ENST00000377967		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000491514	ENST00000382899		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000491514	ENST00000536777		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-3CDS	ENST00000491514	ENST00000543216		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
intron-intron	ENST00000491514	ENST00000479423		TCGA	LD	PRAD	TCGA-EJ-8469-01A	ARHGAP6	chrX	11445668	-	KDM6A	chrX	44920569	+
Frame-shit	ENST00000470487	ENST00000392766		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000470487	ENST00000392767		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000470487	ENST00000307529		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000470487	ENST00000455345		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000470487	ENST00000392764		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
5CDS-intron	ENST00000470487	ENST00000469220		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000309027	ENST00000392766		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000309027	ENST00000392767		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000309027	ENST00000307529		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000309027	ENST00000455345		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
Frame-shit	ENST00000309027	ENST00000392764		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
5CDS-intron	ENST00000309027	ENST00000469220		TCGA	LD	PRAD	TCGA-EJ-8469-01A	GOLIM4	chr3	167812887	-	ZBBX	chr3	167000283	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-8469-01A	TMPRSS2	chr21	42880012	-	ERG	chr21	39817548	-
intron-intron	ENST00000503238	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-5UTR	ENST00000503238	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000503238	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000503238	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-5UTR	ENST00000503238	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000358350	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000358350	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000358350	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000358350	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000358350	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000537810	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000537810	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000537810	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000537810	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000537810	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000264319	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000264319	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000264319	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000264319	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000264319	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000507711	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000507711	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000507711	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000507711	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000507711	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000514783	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000514783	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000514783	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-intron	ENST00000514783	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5UTR-5UTR	ENST00000514783	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000507873	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-5UTR	ENST00000507873	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000507873	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000507873	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-5UTR	ENST00000507873	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000506685	ENST00000402813		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-5UTR	ENST00000506685	ENST00000514170		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000506685	ENST00000358519		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-intron	ENST00000506685	ENST00000544810		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
intron-5UTR	ENST00000506685	ENST00000420489		TCGA	LD	PRAD	TCGA-EJ-8470-01A	FRYL	chr4	48686690	-	CNGA1	chr4	48012910	-
5CDS-5UTR	ENST00000356462	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5CDS-5UTR	ENST00000400345	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
intron-5UTR	ENST00000589054	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5UTR-5UTR	ENST00000256832	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5CDS-5UTR	ENST00000382850	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5CDS-5UTR	ENST00000256830	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
intron-5UTR	ENST00000588516	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5UTR-5UTR	ENST00000456986	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5UTR-5UTR	ENST00000435432	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5CDS-5UTR	ENST00000357895	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5CDS-5UTR	ENST00000586263	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5UTR-5UTR	ENST00000456173	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5UTR-5UTR	ENST00000431212	ENST00000573319		TCGA	LD	PRAD	TCGA-EJ-8470-01A	NEDD4L	chr18	55919286	+	BCAR4	chr16	11922248	-
5CDS-intron	ENST00000260197	ENST00000233027		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000260197	ENST00000535191		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000260197	ENST00000383721		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
intron-intron	ENST00000532451	ENST00000233027		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
intron-intron	ENST00000532451	ENST00000535191		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
intron-intron	ENST00000532451	ENST00000383721		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000525532	ENST00000233027		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000525532	ENST00000535191		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000525532	ENST00000383721		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000532694	ENST00000233027		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000532694	ENST00000535191		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000532694	ENST00000383721		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000534286	ENST00000233027		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000534286	ENST00000535191		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000534286	ENST00000383721		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000527934	ENST00000233027		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000527934	ENST00000535191		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000527934	ENST00000383721		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SORL1	chr11	121483541	+	NEK4	chr3	52743951	-
5CDS-intron	ENST00000322652	ENST00000356175		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000322652	ENST00000358273		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000322652	ENST00000431387		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000322652	ENST00000581113		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000322652	ENST00000417592		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-3UTR	ENST00000322652	ENST00000444181		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000580398	ENST00000356175		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000580398	ENST00000358273		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000580398	ENST00000431387		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000580398	ENST00000581113		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-intron	ENST00000580398	ENST00000417592		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
5CDS-3UTR	ENST00000580398	ENST00000444181		TCGA	LD	PRAD	TCGA-EJ-8472-01A	SUZ12	chr17	30293215	+	NF1	chr17	29708891	+
3UTR-3CDS	ENST00000493946	ENST00000369849		TCGA	LD	PRAD	TCGA-EJ-8474-01A	GSTO1	chr10	106022835	+	INA	chr10	105046792	+
In-frame	ENST00000539281	ENST00000369849		TCGA	LD	PRAD	TCGA-EJ-8474-01A	GSTO1	chr10	106022835	+	INA	chr10	105046792	+
intron-3CDS	ENST00000369710	ENST00000369849		TCGA	LD	PRAD	TCGA-EJ-8474-01A	GSTO1	chr10	106022835	+	INA	chr10	105046792	+
In-frame	ENST00000369713	ENST00000369849		TCGA	LD	PRAD	TCGA-EJ-8474-01A	GSTO1	chr10	106022835	+	INA	chr10	105046792	+
Frame-shit	ENST00000450454	ENST00000407149		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
Frame-shit	ENST00000450454	ENST00000379551		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000450454	ENST00000505123		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000450454	ENST00000446965		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
Frame-shit	ENST00000374601	ENST00000407149		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
Frame-shit	ENST00000374601	ENST00000379551		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000374601	ENST00000505123		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000374601	ENST00000446965		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
Frame-shit	ENST00000461794	ENST00000407149		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
Frame-shit	ENST00000461794	ENST00000379551		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000461794	ENST00000505123		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000461794	ENST00000446965		TCGA	LD	PRAD	TCGA-EJ-8474-01A	TCEA3	chr1	23743742	-	PRR16	chr5	120021649	+
In-frame	ENST00000336375	ENST00000451320		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000336375	ENST00000429148		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000336375	ENST00000353617		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000336375	ENST00000405727		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000336375	ENST00000356064		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000336375	ENST00000511289		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
In-frame	ENST00000475741	ENST00000451320		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000475741	ENST00000429148		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000475741	ENST00000353617		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000475741	ENST00000405727		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000475741	ENST00000356064		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000475741	ENST00000511289		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
In-frame	ENST00000351273	ENST00000451320		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000351273	ENST00000429148		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000351273	ENST00000353617		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000351273	ENST00000405727		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000351273	ENST00000356064		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000351273	ENST00000511289		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
3UTR-3CDS	ENST00000489084	ENST00000451320		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000489084	ENST00000429148		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000489084	ENST00000353617		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000489084	ENST00000405727		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000489084	ENST00000356064		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
3UTR-3UTR	ENST00000489084	ENST00000511289		TCGA	LD	PRAD	TCGA-EJ-A46D-01A	ACPP	chr3	132036420	+	ARFIP1	chr4	153784758	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000301587	ENST00000392562		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000301587	ENST00000316804		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000301587	ENST00000316615		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000301587	ENST00000392563		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000301587	ENST00000392564		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000301587	ENST00000578961		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000301587	ENST00000462266		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000344546	ENST00000392562		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000344546	ENST00000316804		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000344546	ENST00000316615		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000344546	ENST00000392563		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000344546	ENST00000392564		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
Frame-shit	ENST00000344546	ENST00000578961		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
5CDS-intron	ENST00000344546	ENST00000462266		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	ATP5H	chr17	73038276	-	GRB2	chr17	73328878	-
5CDS-5UTR	ENST00000309311	ENST00000601760		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
5CDS-intron	ENST00000309311	ENST00000301454		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
5CDS-intron	ENST00000309311	ENST00000414491		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
5CDS-intron	ENST00000309311	ENST00000334510		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
intron-5UTR	ENST00000600720	ENST00000601760		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
intron-intron	ENST00000600720	ENST00000301454		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
intron-intron	ENST00000600720	ENST00000414491		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
intron-intron	ENST00000600720	ENST00000334510		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	EEF2	chr19	3983108	-	SLC25A23	chr19	6436475	-
Frame-shit	ENST00000356462	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000356462	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000356462	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000400345	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000400345	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000400345	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000589054	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000589054	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000589054	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000256832	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000256832	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000256832	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000382850	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000382850	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000382850	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000256830	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000256830	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000256830	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
3UTR-3CDS	ENST00000588516	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
3UTR-5UTR	ENST00000588516	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
3UTR-intron	ENST00000588516	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000456986	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000456986	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000456986	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000435432	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000435432	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000435432	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000357895	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000357895	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000357895	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000586263	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000586263	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000586263	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000456173	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000456173	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000456173	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000431212	ENST00000301244		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000431212	ENST00000587090		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000431212	ENST00000454580		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	NEDD4L	chr18	55833093	+	SPINT2	chr19	38774267	+
In-frame	ENST00000287878	ENST00000262189		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
In-frame	ENST00000287878	ENST00000355193		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000287878	ENST00000485655		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000287878	ENST00000485241		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-3CDS	ENST00000418337	ENST00000262189		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-3CDS	ENST00000418337	ENST00000355193		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-intron	ENST00000418337	ENST00000485655		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-intron	ENST00000418337	ENST00000485241		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
In-frame	ENST00000433631	ENST00000262189		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
In-frame	ENST00000433631	ENST00000355193		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000433631	ENST00000485655		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000433631	ENST00000485241		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
In-frame	ENST00000492843	ENST00000262189		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
In-frame	ENST00000492843	ENST00000355193		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000492843	ENST00000485655		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000492843	ENST00000485241		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
Frame-shit	ENST00000392801	ENST00000262189		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
Frame-shit	ENST00000392801	ENST00000355193		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000392801	ENST00000485655		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
5CDS-intron	ENST00000392801	ENST00000485241		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-3CDS	ENST00000461529	ENST00000262189		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-3CDS	ENST00000461529	ENST00000355193		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-intron	ENST00000461529	ENST00000485655		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
intron-intron	ENST00000461529	ENST00000485241		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	PRKAG2	chr7	151372506	-	KMT2C	chr7	151860911	-
Frame-shit	ENST00000267484	ENST00000321731		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	RTN1	chr14	60212426	-	C14orf39	chr14	60908849	-
intron-3CDS	ENST00000395090	ENST00000321731		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	RTN1	chr14	60212426	-	C14orf39	chr14	60908849	-
intron-3CDS	ENST00000342503	ENST00000321731		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	RTN1	chr14	60212426	-	C14orf39	chr14	60908849	-
intron-3CDS	ENST00000557422	ENST00000321731		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	RTN1	chr14	60212426	-	C14orf39	chr14	60908849	-
intron-3CDS	ENST00000553443	ENST00000396472		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000553443	ENST00000382406		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000553443	ENST00000280987		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000553443	ENST00000554052		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000476979	ENST00000396472		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000476979	ENST00000382406		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000476979	ENST00000280987		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000476979	ENST00000554052		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000267368	ENST00000396472		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000267368	ENST00000382406		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000267368	ENST00000280987		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000267368	ENST00000554052		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000382320	ENST00000396472		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000382320	ENST00000382406		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000382320	ENST00000280987		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000382320	ENST00000554052		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000554555	ENST00000396472		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000554555	ENST00000382406		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000554555	ENST00000280987		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-intron	ENST00000554555	ENST00000554052		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	FAM177A1	chr14	35522484	+
intron-3CDS	ENST00000553443	ENST00000604948		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553443	ENST00000557565		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553443	ENST00000250377		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553443	ENST00000321130		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553443	ENST00000534898		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553443	ENST00000603544		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000553443	ENST00000605870		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000553443	ENST00000603588		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000604948		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000557565		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000250377		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000321130		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000534898		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000603544		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000476979	ENST00000605870		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000476979	ENST00000603588		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000604948		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000557565		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000250377		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000321130		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000534898		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000603544		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000267368	ENST00000605870		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000267368	ENST00000603588		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000604948		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000557565		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000250377		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000321130		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000534898		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000603544		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000382320	ENST00000605870		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000382320	ENST00000603588		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000604948		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000557565		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000250377		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000321130		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000534898		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000603544		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000554555	ENST00000605870		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000554555	ENST00000603588		TCGA	LD	PRAD	TCGA-EJ-A46G-01A	TTC6	chr14	38075947	+	KIAA0391	chr14	35735933	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A46I-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000523764	ENST00000284262		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	ALG11	chr13	52599073	+	JPH3	chr16	87730186	+
intron-3UTR	ENST00000523764	ENST00000563609		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	ALG11	chr13	52599073	+	JPH3	chr16	87730186	+
In-frame	ENST00000521508	ENST00000284262		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	ALG11	chr13	52599073	+	JPH3	chr16	87730186	+
5CDS-3UTR	ENST00000521508	ENST00000563609		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	ALG11	chr13	52599073	+	JPH3	chr16	87730186	+
3UTR-3CDS	ENST00000519151	ENST00000284262		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	ALG11	chr13	52599073	+	JPH3	chr16	87730186	+
3UTR-3UTR	ENST00000519151	ENST00000563609		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	ALG11	chr13	52599073	+	JPH3	chr16	87730186	+
5CDS-5UTR	ENST00000406486	ENST00000215829		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	KIAA1671	chr22	25445331	+	SNRPD3	chr22	24953625	+
5CDS-5UTR	ENST00000406486	ENST00000402849		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	KIAA1671	chr22	25445331	+	SNRPD3	chr22	24953625	+
5CDS-5UTR	ENST00000358431	ENST00000215829		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	KIAA1671	chr22	25445331	+	SNRPD3	chr22	24953625	+
5CDS-5UTR	ENST00000358431	ENST00000402849		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	KIAA1671	chr22	25445331	+	SNRPD3	chr22	24953625	+
intron-5UTR	ENST00000401395	ENST00000215829		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	KIAA1671	chr22	25445331	+	SNRPD3	chr22	24953625	+
intron-5UTR	ENST00000401395	ENST00000402849		TCGA	LD	PRAD	TCGA-EJ-A65B-01A	KIAA1671	chr22	25445331	+	SNRPD3	chr22	24953625	+
intron-3CDS	ENST00000398907	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398907	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398907	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000398907	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398905	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398905	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000398905	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000398905	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000288319	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000288319	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000288319	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000288319	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000398897	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000398897	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000398897	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-intron	ENST00000398897	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398911	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398911	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398911	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000398911	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000398910	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000398910	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000398910	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000398910	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000417133	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000417133	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000417133	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000417133	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000442448	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000442448	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
In-frame	ENST00000442448	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000442448	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000453032	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000453032	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000453032	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000453032	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398919	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398919	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000398919	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5CDS-intron	ENST00000398919	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000429727	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000429727	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-3CDS	ENST00000429727	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
intron-intron	ENST00000429727	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000485493	ENST00000332149		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000485493	ENST00000398585		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-3CDS	ENST00000485493	ENST00000458356		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
5UTR-intron	ENST00000485493	ENST00000497881		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42852529	-
Frame-shit	ENST00000354570	ENST00000292614		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000354570	ENST00000393794		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000454590	ENST00000292614		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000454590	ENST00000393794		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000544465	ENST00000292614		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000544465	ENST00000393794		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000438100	ENST00000292614		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
Frame-shit	ENST00000438100	ENST00000393794		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
In-frame	ENST00000432797	ENST00000292614		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
In-frame	ENST00000432797	ENST00000393794		TCGA	LD	PRAD	TCGA-EJ-A65D-01A	MAP7	chr6	136686873	-	POLR2J	chr7	102116717	-
5CDS-5UTR	ENST00000354570	ENST00000367651		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
5CDS-5UTR	ENST00000354570	ENST00000537332		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
5CDS-5UTR	ENST00000354570	ENST00000536159		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000454590	ENST00000367651		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000454590	ENST00000537332		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000454590	ENST00000536159		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000544465	ENST00000367651		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000544465	ENST00000537332		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000544465	ENST00000536159		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000438100	ENST00000367651		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000438100	ENST00000537332		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000438100	ENST00000536159		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000432797	ENST00000367651		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000432797	ENST00000537332		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
intron-5UTR	ENST00000432797	ENST00000536159		TCGA	LD	PRAD	TCGA-EJ-A65F-01A	MAP7	chr6	136871480	-	CITED2	chr6	139695089	-
In-frame	ENST00000322507	ENST00000196169		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000322507	ENST00000377894		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000322507	ENST00000535286		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000322507	ENST00000377881		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000322507	ENST00000463109		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000345356	ENST00000196169		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000345356	ENST00000377894		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000345356	ENST00000535286		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000345356	ENST00000377881		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000345356	ENST00000463109		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000416123	ENST00000196169		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000416123	ENST00000377894		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000416123	ENST00000535286		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000416123	ENST00000377881		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000416123	ENST00000463109		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000483888	ENST00000196169		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000483888	ENST00000377894		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000483888	ENST00000535286		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
In-frame	ENST00000483888	ENST00000377881		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5CDS-intron	ENST00000483888	ENST00000463109		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5UTR-3CDS	ENST00000511023	ENST00000196169		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5UTR-3CDS	ENST00000511023	ENST00000377894		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5UTR-3CDS	ENST00000511023	ENST00000535286		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5UTR-3CDS	ENST00000511023	ENST00000377881		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5UTR-intron	ENST00000511023	ENST00000463109		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	COL12A1	chr6	75801206	-	TDRD3	chr13	61141659	+
5CDS-5UTR	ENST00000374759	ENST00000573984		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000374759	ENST00000575251		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000374759	ENST00000301391		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000374759	ENST00000575411		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000288439	ENST00000573984		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000288439	ENST00000575251		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000288439	ENST00000301391		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
5CDS-5UTR	ENST00000288439	ENST00000575411		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
intron-5UTR	ENST00000546352	ENST00000573984		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
intron-5UTR	ENST00000546352	ENST00000575251		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
intron-5UTR	ENST00000546352	ENST00000301391		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
intron-5UTR	ENST00000546352	ENST00000575411		TCGA	LD	PRAD	TCGA-EJ-A65G-01A	SLC38A10	chr17	79263491	-	CYB5D2	chr17	4053185	+
In-frame	ENST00000359204	ENST00000371447		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
5CDS-intron	ENST00000359204	ENST00000475427		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
5UTR-3CDS	ENST00000460752	ENST00000371447		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
5UTR-intron	ENST00000460752	ENST00000475427		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
3UTR-3CDS	ENST00000536233	ENST00000371447		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
3UTR-intron	ENST00000536233	ENST00000475427		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
intron-3CDS	ENST00000371430	ENST00000371447		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
intron-intron	ENST00000371430	ENST00000475427		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
intron-3CDS	ENST00000394100	ENST00000371447		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
intron-intron	ENST00000394100	ENST00000475427		TCGA	LD	PRAD	TCGA-EJ-A65J-01A	FRA10AC1	chr10	95430527	-	PDE6C	chr10	95418658	+
Frame-shit	ENST00000264499	ENST00000273371		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-5UTR	ENST00000264499	ENST00000488919		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-5UTR	ENST00000264499	ENST00000495992		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-5UTR	ENST00000264499	ENST00000494440		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
Frame-shit	ENST00000506636	ENST00000273371		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-5UTR	ENST00000506636	ENST00000488919		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-5UTR	ENST00000506636	ENST00000495992		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-5UTR	ENST00000506636	ENST00000494440		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	BBS7	chr4	122789136	-	PLA1A	chr3	119327617	+
5CDS-intron	ENST00000297431	ENST00000474476		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000297431	ENST00000371218		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000297431	ENST00000303721		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000297431	ENST00000371212		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000297431	ENST00000371210		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000545943	ENST00000474476		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000545943	ENST00000371218		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000545943	ENST00000303721		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000545943	ENST00000371212		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000545943	ENST00000371210		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000447452	ENST00000474476		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000447452	ENST00000371218		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000447452	ENST00000303721		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000447452	ENST00000371212		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000447452	ENST00000371210		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
intron-intron	ENST00000485726	ENST00000474476		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
intron-intron	ENST00000485726	ENST00000371218		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
intron-intron	ENST00000485726	ENST00000303721		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
intron-intron	ENST00000485726	ENST00000371212		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
intron-intron	ENST00000485726	ENST00000371210		TCGA	LD	PRAD	TCGA-EJ-A65M-01A	ORC5	chr7	103824391	-	FGGY	chr1	60223603	+
In-frame	ENST00000367660	ENST00000421351		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	ABRACL	chr6	139355358	+	PERP	chr6	138417631	-
Frame-shit	ENST00000461027	ENST00000421351		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	ABRACL	chr6	139355358	+	PERP	chr6	138417631	-
In-frame	ENST00000388712	ENST00000277141		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000388712	ENST00000375961		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000388712	ENST00000375960		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000388712	ENST00000375957		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000388712	ENST00000375963		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
5CDS-intron	ENST00000388712	ENST00000469004		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
5CDS-intron	ENST00000388712	ENST00000375948		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
5CDS-intron	ENST00000388712	ENST00000375947		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000388711	ENST00000277141		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
In-frame	ENST00000388711	ENST00000375961		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
In-frame	ENST00000388711	ENST00000375960		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000388711	ENST00000375957		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
In-frame	ENST00000388711	ENST00000375963		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
5CDS-intron	ENST00000388711	ENST00000469004		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
5CDS-intron	ENST00000388711	ENST00000375948		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
5CDS-intron	ENST00000388711	ENST00000375947		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-3CDS	ENST00000257504	ENST00000277141		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-3CDS	ENST00000257504	ENST00000375961		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-3CDS	ENST00000257504	ENST00000375960		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-3CDS	ENST00000257504	ENST00000375957		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-3CDS	ENST00000257504	ENST00000375963		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-intron	ENST00000257504	ENST00000469004		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-intron	ENST00000257504	ENST00000375948		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
intron-intron	ENST00000257504	ENST00000375947		TCGA	LD	PRAD	TCGA-EJ-A6RA-01A	GOLM1	chr9	88648197	-	ZCCHC6	chr9	88903659	-
Frame-shit	ENST00000348428	ENST00000265715		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000348428	ENST00000541474		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000348428	ENST00000544569		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000348428	ENST00000543100		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
5CDS-3UTR	ENST00000348428	ENST00000480841		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000345724	ENST00000265715		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000345724	ENST00000541474		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000345724	ENST00000544569		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
Frame-shit	ENST00000345724	ENST00000543100		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
5CDS-3UTR	ENST00000345724	ENST00000480841		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	MALT1	chr18	56402561	+	SLC26A4	chr7	107338487	+
5CDS-5UTR	ENST00000265715	ENST00000535401		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-3UTR	ENST00000265715	ENST00000535185		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000265715	ENST00000299964		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000265715	ENST00000541754		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000265715	ENST00000542647		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000265715	ENST00000545255		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-5UTR	ENST00000541474	ENST00000535401		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-3UTR	ENST00000541474	ENST00000535185		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000541474	ENST00000299964		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000541474	ENST00000541754		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000541474	ENST00000542647		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000541474	ENST00000545255		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-5UTR	ENST00000544569	ENST00000535401		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-3UTR	ENST00000544569	ENST00000535185		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000544569	ENST00000299964		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000544569	ENST00000541754		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000544569	ENST00000542647		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000544569	ENST00000545255		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-5UTR	ENST00000543100	ENST00000535401		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-3UTR	ENST00000543100	ENST00000535185		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000543100	ENST00000299964		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000543100	ENST00000541754		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000543100	ENST00000542647		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5CDS-intron	ENST00000543100	ENST00000545255		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
intron-5UTR	ENST00000480841	ENST00000535401		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
intron-3UTR	ENST00000480841	ENST00000535185		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
intron-intron	ENST00000480841	ENST00000299964		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
intron-intron	ENST00000480841	ENST00000541754		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
intron-intron	ENST00000480841	ENST00000542647		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
intron-intron	ENST00000480841	ENST00000545255		TCGA	LD	PRAD	TCGA-EJ-A6RC-01A	SLC26A4	chr7	107342502	+	NNMT	chr11	114133570	+
5UTR-intron	ENST00000375441	ENST00000400393		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5UTR-intron	ENST00000375441	ENST00000443723		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5UTR-intron	ENST00000375441	ENST00000504404		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5UTR-intron	ENST00000451881	ENST00000400393		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5UTR-intron	ENST00000451881	ENST00000443723		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5UTR-intron	ENST00000451881	ENST00000504404		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
intron-intron	ENST00000326335	ENST00000400393		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
intron-intron	ENST00000326335	ENST00000443723		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
intron-intron	ENST00000326335	ENST00000504404		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5CDS-intron	ENST00000375440	ENST00000400393		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5CDS-intron	ENST00000375440	ENST00000443723		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
5CDS-intron	ENST00000375440	ENST00000504404		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
3UTR-intron	ENST00000463426	ENST00000400393		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
3UTR-intron	ENST00000463426	ENST00000443723		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
3UTR-intron	ENST00000463426	ENST00000504404		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	CUL4A	chr13	113864402	+	DLEU7	chr13	51397656	-
Frame-shit	ENST00000398344	ENST00000336375		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000398344	ENST00000475741		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
In-frame	ENST00000398344	ENST00000351273		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
5CDS-intron	ENST00000398344	ENST00000489084		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000350608	ENST00000336375		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
In-frame	ENST00000350608	ENST00000475741		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000350608	ENST00000351273		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
5CDS-intron	ENST00000350608	ENST00000489084		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000404092	ENST00000336375		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
In-frame	ENST00000404092	ENST00000475741		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000404092	ENST00000351273		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
5CDS-intron	ENST00000404092	ENST00000489084		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000403754	ENST00000336375		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000403754	ENST00000475741		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
In-frame	ENST00000403754	ENST00000351273		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
5CDS-intron	ENST00000403754	ENST00000489084		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000430101	ENST00000336375		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
Frame-shit	ENST00000430101	ENST00000475741		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
In-frame	ENST00000430101	ENST00000351273		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
5CDS-intron	ENST00000430101	ENST00000489084		TCGA	LD	PRAD	TCGA-EJ-A7NH-01A	DDT	chr22	24315957	-	ACPP	chr3	132075530	+
intron-3CDS	ENST00000368882	ENST00000305997		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
intron-5UTR	ENST00000368882	ENST00000486484		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
In-frame	ENST00000368885	ENST00000305997		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
5CDS-5UTR	ENST00000368885	ENST00000486484		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
intron-3CDS	ENST00000451850	ENST00000305997		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
intron-5UTR	ENST00000451850	ENST00000486484		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
In-frame	ENST00000368877	ENST00000305997		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
5CDS-5UTR	ENST00000368877	ENST00000486484		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
In-frame	ENST00000368876	ENST00000305997		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
5CDS-5UTR	ENST00000368876	ENST00000486484		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	AMD1	chr6	111210186	+	MBOAT2	chr2	9004364	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-EJ-A7NK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
Frame-shit	ENST00000305997	ENST00000340611		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	MBOAT2	chr2	9143669	-	BRAT1	chr7	2587112	-
5CDS-intron	ENST00000305997	ENST00000473879		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	MBOAT2	chr2	9143669	-	BRAT1	chr7	2587112	-
5UTR-3CDS	ENST00000486484	ENST00000340611		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	MBOAT2	chr2	9143669	-	BRAT1	chr7	2587112	-
5UTR-intron	ENST00000486484	ENST00000473879		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	MBOAT2	chr2	9143669	-	BRAT1	chr7	2587112	-
5CDS-intron	ENST00000392314	ENST00000393651		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-5UTR	ENST00000392314	ENST00000357311		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-5UTR	ENST00000392314	ENST00000489828		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-intron	ENST00000392314	ENST00000493638		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-intron	ENST00000272771	ENST00000393651		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-5UTR	ENST00000272771	ENST00000357311		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-5UTR	ENST00000272771	ENST00000489828		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5CDS-intron	ENST00000272771	ENST00000493638		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5UTR-intron	ENST00000487771	ENST00000393651		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5UTR-5UTR	ENST00000487771	ENST00000357311		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5UTR-5UTR	ENST00000487771	ENST00000489828		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
5UTR-intron	ENST00000487771	ENST00000493638		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
intron-intron	ENST00000409056	ENST00000393651		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
intron-5UTR	ENST00000409056	ENST00000357311		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
intron-5UTR	ENST00000409056	ENST00000489828		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
intron-intron	ENST00000409056	ENST00000493638		TCGA	LD	PRAD	TCGA-EJ-A7NM-01A	TMEFF2	chr2	192862988	-	SRPK2	chr7	104909316	-
In-frame	ENST00000372837	ENST00000369902		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
5CDS-intron	ENST00000372837	ENST00000369899		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
5CDS-intron	ENST00000372837	ENST00000423559		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
5CDS-intron	ENST00000372837	ENST00000471000		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
In-frame	ENST00000372833	ENST00000369902		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
5CDS-intron	ENST00000372833	ENST00000369899		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
5CDS-intron	ENST00000372833	ENST00000423559		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
5CDS-intron	ENST00000372833	ENST00000471000		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	CHCHD1	chr10	75542199	+	SUFU	chr10	104386932	+
Frame-shit	ENST00000332149	ENST00000265431		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
Frame-shit	ENST00000332149	ENST00000518457		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
Frame-shit	ENST00000398585	ENST00000265431		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
Frame-shit	ENST00000398585	ENST00000518457		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
In-frame	ENST00000458356	ENST00000265431		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
In-frame	ENST00000458356	ENST00000518457		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
intron-3CDS	ENST00000497881	ENST00000265431		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
intron-3CDS	ENST00000497881	ENST00000518457		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	TMPRSS2	chr21	42848504	-	CALB1	chr8	91072928	-
5UTR-3CDS	ENST00000449707	ENST00000263331		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-3CDS	ENST00000449707	ENST00000541869		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-3CDS	ENST00000449707	ENST00000409894		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-5UTR	ENST00000449707	ENST00000537335		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-5UTR	ENST00000449707	ENST00000417433		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-intron	ENST00000449707	ENST00000498054		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-3CDS	ENST00000411696	ENST00000263331		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-3CDS	ENST00000411696	ENST00000541869		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-3CDS	ENST00000411696	ENST00000409894		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-5UTR	ENST00000411696	ENST00000537335		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-5UTR	ENST00000411696	ENST00000417433		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
5UTR-intron	ENST00000411696	ENST00000498054		TCGA	LD	PRAD	TCGA-EJ-A7NN-01A	ZNF142	chr2	219523703	-	POLR1B	chr2	113308443	+
Frame-shit	ENST00000316788	ENST00000308105		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	AP3S1	chr5	115177803	+	C1orf100	chr1	244538674	+
Frame-shit	ENST00000316788	ENST00000366537		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	AP3S1	chr5	115177803	+	C1orf100	chr1	244538674	+
5CDS-intron	ENST00000316788	ENST00000470211		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	AP3S1	chr5	115177803	+	C1orf100	chr1	244538674	+
intron-3CDS	ENST00000505423	ENST00000308105		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	AP3S1	chr5	115177803	+	C1orf100	chr1	244538674	+
intron-3CDS	ENST00000505423	ENST00000366537		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	AP3S1	chr5	115177803	+	C1orf100	chr1	244538674	+
intron-intron	ENST00000505423	ENST00000470211		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	AP3S1	chr5	115177803	+	C1orf100	chr1	244538674	+
5UTR-3CDS	ENST00000265304	ENST00000222381		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
5UTR-intron	ENST00000265304	ENST00000542556		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
5UTR-3CDS	ENST00000498107	ENST00000222381		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
5UTR-intron	ENST00000498107	ENST00000542556		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
3UTR-3CDS	ENST00000469123	ENST00000222381		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
3UTR-intron	ENST00000469123	ENST00000542556		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
5UTR-3CDS	ENST00000465582	ENST00000222381		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
5UTR-intron	ENST00000465582	ENST00000542556		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
intron-3CDS	ENST00000484178	ENST00000222381		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
intron-intron	ENST00000484178	ENST00000542556		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
intron-3CDS	ENST00000481508	ENST00000222381		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
intron-intron	ENST00000481508	ENST00000542556		TCGA	LD	PRAD	TCGA-EJ-A8FN-01A	SSBP1	chr7	141438210	+	PON1	chr7	94947705	-
5UTR-intron	ENST00000349945	ENST00000359376		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5UTR-intron	ENST00000349945	ENST00000565400		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5CDS-intron	ENST00000432919	ENST00000359376		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5CDS-intron	ENST00000432919	ENST00000565400		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5CDS-intron	ENST00000354436	ENST00000359376		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5CDS-intron	ENST00000354436	ENST00000565400		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5CDS-intron	ENST00000567239	ENST00000359376		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5CDS-intron	ENST00000567239	ENST00000565400		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5UTR-intron	ENST00000393742	ENST00000359376		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5UTR-intron	ENST00000393742	ENST00000565400		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5UTR-intron	ENST00000566899	ENST00000359376		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
5UTR-intron	ENST00000566899	ENST00000565400		TCGA	LD	PRAD	TCGA-EJ-A8FO-01A	NFAT5	chr16	69600277	+	PLCG2	chr16	81789475	+
In-frame	ENST00000393232	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
In-frame	ENST00000353868	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
In-frame	ENST00000539636	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
In-frame	ENST00000311967	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
In-frame	ENST00000223190	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
In-frame	ENST00000393230	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
In-frame	ENST00000393231	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
intron-3CDS	ENST00000477428	ENST00000286091		TCGA	LD	PRAD	TCGA-EJ-A8FU-01A	NRF1	chr7	129367205	+	PDIA4	chr7	148718239	-
5CDS-intron	ENST00000368192	ENST00000488498		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	ETV3	chr1	157103904	-	C1orf61	chr1	156399911	-
5CDS-intron	ENST00000368192	ENST00000368243		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	ETV3	chr1	157103904	-	C1orf61	chr1	156399911	-
intron-intron	ENST00000326786	ENST00000488498		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	ETV3	chr1	157103904	-	C1orf61	chr1	156399911	-
intron-intron	ENST00000326786	ENST00000368243		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	ETV3	chr1	157103904	-	C1orf61	chr1	156399911	-
intron-intron	ENST00000460850	ENST00000488498		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	ETV3	chr1	157103904	-	C1orf61	chr1	156399911	-
intron-intron	ENST00000460850	ENST00000368243		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	ETV3	chr1	157103904	-	C1orf61	chr1	156399911	-
intron-3CDS	ENST00000377200	ENST00000377041		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	PTAR1	chr9	72356708	-	ABHD17B	chr9	74477523	-
intron-intron	ENST00000377200	ENST00000333421		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	PTAR1	chr9	72356708	-	ABHD17B	chr9	74477523	-
Frame-shit	ENST00000340434	ENST00000377041		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	PTAR1	chr9	72356708	-	ABHD17B	chr9	74477523	-
5CDS-intron	ENST00000340434	ENST00000333421		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	PTAR1	chr9	72356708	-	ABHD17B	chr9	74477523	-
intron-3CDS	ENST00000472967	ENST00000377041		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	PTAR1	chr9	72356708	-	ABHD17B	chr9	74477523	-
intron-intron	ENST00000472967	ENST00000333421		TCGA	LD	PRAD	TCGA-EJ-AB27-01A	PTAR1	chr9	72356708	-	ABHD17B	chr9	74477523	-
Frame-shit	ENST00000264235	ENST00000261070		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
Frame-shit	ENST00000264235	ENST00000484810		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
Frame-shit	ENST00000264235	ENST00000497116		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
Frame-shit	ENST00000316626	ENST00000261070		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
Frame-shit	ENST00000316626	ENST00000484810		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
Frame-shit	ENST00000316626	ENST00000497116		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
5UTR-3CDS	ENST00000473886	ENST00000261070		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
5UTR-3CDS	ENST00000473886	ENST00000484810		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
5UTR-3CDS	ENST00000473886	ENST00000497116		TCGA	LD	PRAD	TCGA-FC-7708-01A	GSK3B	chr3	119582266	-	COX17	chr3	119394080	-
Frame-shit	ENST00000553277	ENST00000552285		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000553277	ENST00000315970		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000439210		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000389146		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000413095		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000551035		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000435406		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000257966		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000553277	ENST00000389142		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000243077	ENST00000552285		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000243077	ENST00000315970		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000439210		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000389146		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000413095		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000551035		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000435406		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000257966		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000243077	ENST00000389142		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000338962	ENST00000552285		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000338962	ENST00000315970		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000439210		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000389146		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000413095		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000551035		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000435406		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000257966		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000338962	ENST00000389142		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000554174	ENST00000552285		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
Frame-shit	ENST00000554174	ENST00000315970		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000439210		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000389146		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000413095		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000551035		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000435406		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000257966		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000554174	ENST00000389142		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-3CDS	ENST00000553446	ENST00000552285		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-3CDS	ENST00000553446	ENST00000315970		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000439210		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000389146		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000413095		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000551035		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000435406		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000257966		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
intron-intron	ENST00000553446	ENST00000389142		TCGA	LD	PRAD	TCGA-FC-7708-01A	LRP1	chr12	57522814	+	OS9	chr12	58088533	+
5CDS-intron	ENST00000518852	ENST00000461610		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-5UTR	ENST00000518852	ENST00000447769		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000518852	ENST00000334425		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000240139	ENST00000461610		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-5UTR	ENST00000240139	ENST00000447769		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000240139	ENST00000334425		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000289963	ENST00000461610		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-5UTR	ENST00000289963	ENST00000447769		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000289963	ENST00000334425		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000397775	ENST00000461610		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-5UTR	ENST00000397775	ENST00000447769		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5CDS-intron	ENST00000397775	ENST00000334425		TCGA	LD	PRAD	TCGA-FC-7708-01A	PPP3CC	chr8	22298971	+	GPR141	chr7	37779982	+
5UTR-intron	ENST00000315596	ENST00000338910		TCGA	LD	PRAD	TCGA-FC-7961-01A	PDS5B	chr13	33160730	+	PSPC1	chr13	20251963	-
5UTR-5UTR	ENST00000315596	ENST00000497722		TCGA	LD	PRAD	TCGA-FC-7961-01A	PDS5B	chr13	33160730	+	PSPC1	chr13	20251963	-
In-frame	ENST00000361183	ENST00000421999		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000361183	ENST00000496116		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000361183	ENST00000489081		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
In-frame	ENST00000458284	ENST00000421999		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000458284	ENST00000496116		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000458284	ENST00000489081		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
In-frame	ENST00000490693	ENST00000421999		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000490693	ENST00000496116		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000490693	ENST00000489081		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
intron-3CDS	ENST00000466023	ENST00000421999		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
intron-intron	ENST00000466023	ENST00000496116		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
intron-intron	ENST00000466023	ENST00000489081		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	CAPZA2	chr7	116528244	+	CMSS1	chr3	99865817	+
intron-3CDS	ENST00000375458	ENST00000409634		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000375458	ENST00000333129		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000375458	ENST00000482917		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000342193	ENST00000409634		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000342193	ENST00000333129		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000342193	ENST00000482917		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000409184	ENST00000409634		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000409184	ENST00000333129		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000409184	ENST00000482917		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000392717	ENST00000409634		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000392717	ENST00000333129		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000392717	ENST00000482917		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000194871	ENST00000409634		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000194871	ENST00000333129		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000194871	ENST00000482917		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-3CDS	ENST00000491126	ENST00000409634		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000491126	ENST00000333129		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
intron-intron	ENST00000491126	ENST00000482917		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	COBLL1	chr2	165636165	-	FIGN	chr2	164450306	-
In-frame	ENST00000286614	ENST00000521891		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5CDS-intron	ENST00000286614	ENST00000517683		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5CDS-intron	ENST00000286614	ENST00000050961		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5CDS-intron	ENST00000286614	ENST00000455469		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5CDS-intron	ENST00000286614	ENST00000518282		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5UTR-3CDS	ENST00000544227	ENST00000521891		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5UTR-intron	ENST00000544227	ENST00000517683		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5UTR-intron	ENST00000544227	ENST00000050961		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5UTR-intron	ENST00000544227	ENST00000455469		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
5UTR-intron	ENST00000544227	ENST00000518282		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	MMP16	chr8	89086833	-	ZFHX4	chr8	77745574	+
3UTR-3CDS	ENST00000454040	ENST00000405109		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	PCGEM1	chr2	193615598	+	KBTBD12	chr3	127646607	+
3UTR-5UTR	ENST00000454040	ENST00000407609		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	PCGEM1	chr2	193615598	+	KBTBD12	chr3	127646607	+
3UTR-5UTR	ENST00000454040	ENST00000405256		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	PCGEM1	chr2	193615598	+	KBTBD12	chr3	127646607	+
3UTR-5UTR	ENST00000454040	ENST00000343941		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	PCGEM1	chr2	193615598	+	KBTBD12	chr3	127646607	+
3UTR-intron	ENST00000454040	ENST00000492025		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	PCGEM1	chr2	193615598	+	KBTBD12	chr3	127646607	+
Frame-shit	ENST00000394095	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394095	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394095	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394095	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394095	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
Frame-shit	ENST00000394091	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394091	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394091	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394091	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394091	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
Frame-shit	ENST00000394094	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394094	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394094	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394094	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000394094	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
Frame-shit	ENST00000358203	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000358203	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000358203	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000358203	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000358203	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
Frame-shit	ENST00000314261	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000314261	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000314261	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000314261	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000314261	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
Frame-shit	ENST00000348610	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000348610	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000348610	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000348610	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-intron	ENST00000348610	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
intron-3CDS	ENST00000394085	ENST00000471714		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
intron-intron	ENST00000394085	ENST00000284322		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
intron-intron	ENST00000394085	ENST00000495063		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
intron-intron	ENST00000394085	ENST00000383691		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
intron-intron	ENST00000394085	ENST00000532144		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SENP7	chr3	101212717	-	ABI3BP	chr3	100553617	-
5CDS-5UTR	ENST00000297423	ENST00000338087		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000297423	ENST00000395352		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000297423	ENST00000524345		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000297423	ENST00000517648		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000297423	ENST00000518565		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000297423	ENST00000427060		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-5UTR	ENST00000518074	ENST00000338087		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000518074	ENST00000395352		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000518074	ENST00000524345		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000518074	ENST00000517648		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000518074	ENST00000518565		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000518074	ENST00000427060		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-5UTR	ENST00000541342	ENST00000338087		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000541342	ENST00000395352		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000541342	ENST00000524345		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000541342	ENST00000517648		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000541342	ENST00000518565		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5CDS-intron	ENST00000541342	ENST00000427060		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
3UTR-5UTR	ENST00000521214	ENST00000338087		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
3UTR-intron	ENST00000521214	ENST00000395352		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
3UTR-intron	ENST00000521214	ENST00000524345		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
3UTR-intron	ENST00000521214	ENST00000517648		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
3UTR-intron	ENST00000521214	ENST00000518565		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
3UTR-intron	ENST00000521214	ENST00000427060		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-5UTR	ENST00000517693	ENST00000338087		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000517693	ENST00000395352		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000517693	ENST00000524345		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000517693	ENST00000517648		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000517693	ENST00000518565		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000517693	ENST00000427060		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-5UTR	ENST00000518060	ENST00000338087		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000518060	ENST00000395352		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000518060	ENST00000524345		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000518060	ENST00000517648		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000518060	ENST00000518565		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
intron-intron	ENST00000518060	ENST00000427060		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	SPIDR	chr8	48320523	+	SLA	chr8	134087375	-
5UTR-3CDS	ENST00000359941	ENST00000264485		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	TP53TG1	chr7	86970839	-	SLC4A4	chr4	72205087	+
5UTR-3CDS	ENST00000359941	ENST00000425175		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	TP53TG1	chr7	86970839	-	SLC4A4	chr4	72205087	+
5UTR-3CDS	ENST00000359941	ENST00000351898		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	TP53TG1	chr7	86970839	-	SLC4A4	chr4	72205087	+
5UTR-3CDS	ENST00000359941	ENST00000340595		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	TP53TG1	chr7	86970839	-	SLC4A4	chr4	72205087	+
5UTR-3UTR	ENST00000359941	ENST00000514331		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	TP53TG1	chr7	86970839	-	SLC4A4	chr4	72205087	+
5UTR-3UTR	ENST00000359941	ENST00000512686		TCGA	LD	PRAD	TCGA-FC-A4JI-01A	TP53TG1	chr7	86970839	-	SLC4A4	chr4	72205087	+
Frame-shit	ENST00000266383	ENST00000540180		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
Frame-shit	ENST00000266383	ENST00000422000		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
5CDS-intron	ENST00000266383	ENST00000540344		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
5CDS-intron	ENST00000266383	ENST00000239830		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
5CDS-intron	ENST00000266383	ENST00000412006		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
intron-3CDS	ENST00000544638	ENST00000540180		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
intron-3CDS	ENST00000544638	ENST00000422000		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
intron-intron	ENST00000544638	ENST00000540344		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
intron-intron	ENST00000544638	ENST00000239830		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
intron-intron	ENST00000544638	ENST00000412006		TCGA	LD	PRAD	TCGA-FC-A66V-01A	B4GALNT3	chr12	569711	+	CCDC77	chr12	547501	+
intron-3CDS	ENST00000413465	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
intron-3CDS	ENST00000413465	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
intron-3CDS	ENST00000359597	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
intron-3CDS	ENST00000359597	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000269305	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000269305	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000455263	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000455263	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000420246	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000420246	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000445888	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
5UTR-3CDS	ENST00000445888	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
intron-3CDS	ENST00000574684	ENST00000250092		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
intron-3CDS	ENST00000574684	ENST00000380498		TCGA	LD	PRAD	TCGA-G9-6329-01A	TP53	chr17	7590695	-	CD68	chr17	7484029	+
Frame-shit	ENST00000392314	ENST00000397901		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000392314	ENST00000253475		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000392314	ENST00000535997		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000392314	ENST00000550102		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000392314	ENST00000547614		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000272771	ENST00000397901		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000272771	ENST00000253475		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000272771	ENST00000535997		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
Frame-shit	ENST00000272771	ENST00000550102		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
5CDS-5UTR	ENST00000272771	ENST00000547614		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000397901		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000253475		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000535997		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000487771	ENST00000550102		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000487771	ENST00000547614		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000397901		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000253475		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000535997		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000409056	ENST00000550102		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000409056	ENST00000547614		TCGA	LD	PRAD	TCGA-G9-6332-01A	TMEFF2	chr2	193044394	-	CHMP1A	chr16	89713739	-
In-frame	ENST00000392474	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392474	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392474	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000538733	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000538733	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000538733	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000337174	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000337174	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000337174	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000347034	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000347034	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000347034	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000324774	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000324774	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000324774	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000545538	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000545538	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000545538	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000412367	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000412367	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000412367	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000404169	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000404169	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000404169	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
Frame-shit	ENST00000402834	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000402834	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000402834	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000446440	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000446440	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000446440	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
In-frame	ENST00000392473	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-5UTR	ENST00000392473	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000392473	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-3CDS	ENST00000535524	ENST00000377069		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000542973		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000377071		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-5UTR	ENST00000535524	ENST00000536437		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000538046		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
intron-intron	ENST00000535524	ENST00000543852		TCGA	LD	PRAD	TCGA-G9-6333-01A	CAMKK2	chr12	121708701	-	KDM2B	chr12	121891147	-
5CDS-intron	ENST00000370888	ENST00000514921		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000274897		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000370877		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000509997		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000370876		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000511744		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000358276		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000370888	ENST00000502396		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000514921		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000274897		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000370877		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000509997		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000370876		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000511744		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000358276		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-intron	ENST00000370882	ENST00000502396		TCGA	LD	PRAD	TCGA-G9-6333-01A	LRRC1	chr6	53778767	+	MLIP	chr6	54122106	+
intron-3UTR	ENST00000262741	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000262741	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000262741	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000262741	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000262741	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000372006	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000372006	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000372006	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000372006	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000372006	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000340332	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000340332	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000340332	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000340332	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000340332	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000420542	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000420542	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000420542	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000420542	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000420542	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000354242	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000354242	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000354242	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000354242	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000354242	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
5CDS-3UTR	ENST00000540385	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
5CDS-3UTR	ENST00000540385	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
5CDS-intron	ENST00000540385	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
5CDS-intron	ENST00000540385	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
5CDS-intron	ENST00000540385	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000423209	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000423209	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000423209	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000423209	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000423209	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000488808	ENST00000324695		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-3UTR	ENST00000488808	ENST00000433712		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000488808	ENST00000355722		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000488808	ENST00000409625		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
intron-intron	ENST00000488808	ENST00000466594		TCGA	LD	PRAD	TCGA-G9-6333-01A	PIK3R3	chr1	46509326	-	TRPM8	chr2	234925943	+
5CDS-3UTR	ENST00000311160	ENST00000355451		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
5CDS-5UTR	ENST00000311160	ENST00000460110		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-3UTR	ENST00000355730	ENST00000355451		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-5UTR	ENST00000355730	ENST00000460110		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
5CDS-3UTR	ENST00000398879	ENST00000355451		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
5CDS-5UTR	ENST00000398879	ENST00000460110		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-3UTR	ENST00000442536	ENST00000355451		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-5UTR	ENST00000442536	ENST00000460110		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-3UTR	ENST00000458317	ENST00000355451		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-5UTR	ENST00000458317	ENST00000460110		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-3UTR	ENST00000474346	ENST00000355451		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-5UTR	ENST00000474346	ENST00000460110		TCGA	LD	PRAD	TCGA-G9-6333-01A	TNS3	chr7	47436397	-	NUDCD3	chr7	44423355	-
intron-3CDS	ENST00000460934	ENST00000430479		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000399357		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000420159		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000343495		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000242066		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000405192		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000405358		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000403527		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000405218		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-intron	ENST00000460934	ENST00000403685		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
intron-5UTR	ENST00000460934	ENST00000476720		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-3CDS	ENST00000367145	ENST00000430479		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000399357		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000420159		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000343495		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000242066		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000405192		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000405358		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000403527		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000405218		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-intron	ENST00000367145	ENST00000403685		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-5UTR	ENST00000367145	ENST00000476720		TCGA	LD	PRAD	TCGA-G9-6336-01A	SLC45A3	chr1	205649522	-	ETV1	chr7	13975521	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6336-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3UTR	ENST00000369360	ENST00000323146		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-intron	ENST00000369360	ENST00000508770		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000369360	ENST00000514199		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000360478	ENST00000323146		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-intron	ENST00000360478	ENST00000508770		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000360478	ENST00000514199		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000359988	ENST00000323146		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-intron	ENST00000359988	ENST00000508770		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000359988	ENST00000514199		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000369358	ENST00000323146		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-intron	ENST00000369358	ENST00000508770		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
intron-3UTR	ENST00000369358	ENST00000514199		TCGA	LD	PRAD	TCGA-G9-6338-01A	NRAP	chr10	115348728	-	SLC35A4	chr5	139947743	+
Frame-shit	ENST00000607016	ENST00000374189		TCGA	LD	PRAD	TCGA-G9-6338-01A	NUDT3	chr6	34360041	-	MAPK8	chr10	49639236	+
Frame-shit	ENST00000607016	ENST00000374182		TCGA	LD	PRAD	TCGA-G9-6338-01A	NUDT3	chr6	34360041	-	MAPK8	chr10	49639236	+
Frame-shit	ENST00000607016	ENST00000360332		TCGA	LD	PRAD	TCGA-G9-6338-01A	NUDT3	chr6	34360041	-	MAPK8	chr10	49639236	+
5CDS-intron	ENST00000607016	ENST00000374174		TCGA	LD	PRAD	TCGA-G9-6338-01A	NUDT3	chr6	34360041	-	MAPK8	chr10	49639236	+
5CDS-intron	ENST00000607016	ENST00000395611		TCGA	LD	PRAD	TCGA-G9-6338-01A	NUDT3	chr6	34360041	-	MAPK8	chr10	49639236	+
5CDS-3UTR	ENST00000607016	ENST00000459755		TCGA	LD	PRAD	TCGA-G9-6338-01A	NUDT3	chr6	34360041	-	MAPK8	chr10	49639236	+
5CDS-5UTR	ENST00000306107	ENST00000328557		TCGA	LD	PRAD	TCGA-G9-6339-01A	ALCAM	chr3	105243352	+	NRROS	chr3	196381398	+
5CDS-5UTR	ENST00000472644	ENST00000328557		TCGA	LD	PRAD	TCGA-G9-6339-01A	ALCAM	chr3	105243352	+	NRROS	chr3	196381398	+
3UTR-5UTR	ENST00000481337	ENST00000328557		TCGA	LD	PRAD	TCGA-G9-6339-01A	ALCAM	chr3	105243352	+	NRROS	chr3	196381398	+
5CDS-5UTR	ENST00000486979	ENST00000328557		TCGA	LD	PRAD	TCGA-G9-6339-01A	ALCAM	chr3	105243352	+	NRROS	chr3	196381398	+
intron-5UTR	ENST00000389927	ENST00000328557		TCGA	LD	PRAD	TCGA-G9-6339-01A	ALCAM	chr3	105243352	+	NRROS	chr3	196381398	+
Frame-shit	ENST00000383737	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000383737	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000383737	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000383737	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000395734	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000395734	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000395734	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000395734	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000426837	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000426837	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000426837	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000426837	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000360240	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000360240	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000360240	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000360240	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000439356	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000439356	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000439356	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-5UTR	ENST00000439356	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000264724	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000264724	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000264724	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000264724	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000420772	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000420772	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000420772	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000420772	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000441748	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000441748	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
In-frame	ENST00000441748	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
5CDS-5UTR	ENST00000441748	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000462206	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000462206	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000462206	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-5UTR	ENST00000462206	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000434267	ENST00000425441		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000434267	ENST00000292314		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-3CDS	ENST00000434267	ENST00000546280		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
intron-5UTR	ENST00000434267	ENST00000605358		TCGA	LD	PRAD	TCGA-G9-6339-01A	MAP4	chr3	47912303	-	CCDC12	chr3	46982555	-
Frame-shit	ENST00000261867	ENST00000511148		TCGA	LD	PRAD	TCGA-G9-6342-01A	SLC30A4	chr15	45814162	-	CLRN2	chr4	17528440	+
5UTR-3CDS	ENST00000559667	ENST00000511148		TCGA	LD	PRAD	TCGA-G9-6342-01A	SLC30A4	chr15	45814162	-	CLRN2	chr4	17528440	+
5UTR-3CDS	ENST00000358293	ENST00000504376		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-3CDS	ENST00000358293	ENST00000382254		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-3CDS	ENST00000358293	ENST00000522262		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-intron	ENST00000358293	ENST00000521384		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-3CDS	ENST00000360816	ENST00000504376		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-3CDS	ENST00000360816	ENST00000382254		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-3CDS	ENST00000360816	ENST00000522262		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5UTR-intron	ENST00000360816	ENST00000521384		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
3UTR-3CDS	ENST00000469084	ENST00000504376		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
3UTR-3CDS	ENST00000469084	ENST00000382254		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
3UTR-3CDS	ENST00000469084	ENST00000522262		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
3UTR-intron	ENST00000469084	ENST00000521384		TCGA	LD	PRAD	TCGA-G9-6348-01A	FAM217B	chr20	58517567	+	CDH12	chr5	21975494	-
5CDS-5UTR	ENST00000432126	ENST00000243346		TCGA	LD	PRAD	TCGA-G9-6348-01A	KIAA0141	chr5	141314151	+	NMI	chr2	152139468	-
5CDS-5UTR	ENST00000194118	ENST00000243346		TCGA	LD	PRAD	TCGA-G9-6348-01A	KIAA0141	chr5	141314151	+	NMI	chr2	152139468	-
intron-5UTR	ENST00000506775	ENST00000243346		TCGA	LD	PRAD	TCGA-G9-6348-01A	KIAA0141	chr5	141314151	+	NMI	chr2	152139468	-
Frame-shit	ENST00000391976	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000391976	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000391976	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
5CDS-intron	ENST00000391976	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000310931	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000310931	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000310931	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
5CDS-intron	ENST00000310931	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
In-frame	ENST00000391975	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
In-frame	ENST00000391975	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
In-frame	ENST00000391975	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
5CDS-intron	ENST00000391975	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000427183	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000427183	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
Frame-shit	ENST00000427183	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
5CDS-intron	ENST00000427183	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
intron-3CDS	ENST00000476807	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
intron-3CDS	ENST00000476807	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
intron-3CDS	ENST00000476807	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
intron-intron	ENST00000476807	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6351-01A	HDLBP	chr2	242173235	-	TMPRSS2	chr21	42845423	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000391976		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000332149	ENST00000310931		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-3UTR	ENST00000332149	ENST00000391975		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000332149	ENST00000427183		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000332149	ENST00000476807		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000398585	ENST00000391976		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000398585	ENST00000310931		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-3UTR	ENST00000398585	ENST00000391975		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000398585	ENST00000427183		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000398585	ENST00000476807		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000458356	ENST00000391976		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000458356	ENST00000310931		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-3UTR	ENST00000458356	ENST00000391975		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000458356	ENST00000427183		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5CDS-intron	ENST00000458356	ENST00000476807		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
intron-intron	ENST00000497881	ENST00000391976		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
intron-intron	ENST00000497881	ENST00000310931		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
intron-3UTR	ENST00000497881	ENST00000391975		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
intron-intron	ENST00000497881	ENST00000427183		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
intron-intron	ENST00000497881	ENST00000476807		TCGA	LD	PRAD	TCGA-G9-6351-01A	TMPRSS2	chr21	42848504	-	HDLBP	chr2	242167825	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6353-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000333781	ENST00000328735		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
Frame-shit	ENST00000333781	ENST00000330333		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000333781	ENST00000347667		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
5CDS-3UTR	ENST00000333781	ENST00000466122		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000541890	ENST00000328735		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
Frame-shit	ENST00000541890	ENST00000330333		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000541890	ENST00000347667		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
5CDS-3UTR	ENST00000541890	ENST00000466122		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000398753	ENST00000328735		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
Frame-shit	ENST00000398753	ENST00000330333		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000398753	ENST00000347667		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
5CDS-3UTR	ENST00000398753	ENST00000466122		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000380708	ENST00000328735		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
Frame-shit	ENST00000380708	ENST00000330333		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
In-frame	ENST00000380708	ENST00000347667		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
5CDS-3UTR	ENST00000380708	ENST00000466122		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
3UTR-3CDS	ENST00000466787	ENST00000328735		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
3UTR-3CDS	ENST00000466787	ENST00000330333		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
3UTR-3CDS	ENST00000466787	ENST00000347667		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
3UTR-3UTR	ENST00000466787	ENST00000466122		TCGA	LD	PRAD	TCGA-G9-6353-01A	WRB	chr21	40763762	+	BACE2	chr21	42647298	+
Frame-shit	ENST00000394670	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394670	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394670	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394670	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394670	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394670	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000394670	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000321233	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000321233	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000321233	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000321233	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000321233	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000321233	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000321233	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394673	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394673	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394673	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394673	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394673	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000394673	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000394673	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000341711	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000341711	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000341711	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000341711	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000341711	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000341711	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000341711	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000342555	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000342555	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000342555	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000342555	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000342555	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000342555	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000342555	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000577908	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000577908	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000577908	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000577908	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000577908	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000577908	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
5CDS-intron	ENST00000577908	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000584416	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000584416	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000584416	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000584416	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000584416	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-3CDS	ENST00000584416	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
intron-intron	ENST00000584416	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6356-01A	ZNF207	chr17	30692417	+	ETV4	chr17	41613847	-
Frame-shit	ENST00000379151	ENST00000453228		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000354410		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000558856		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000558812		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000338042		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000557785		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000449277		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000379151	ENST00000557942		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
Frame-shit	ENST00000361121	ENST00000453228		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000354410		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000558856		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000558812		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000338042		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000557785		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000449277		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000361121	ENST00000557942		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-3CDS	ENST00000357537	ENST00000453228		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000354410		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000558856		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000558812		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000338042		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000557785		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000449277		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000357537	ENST00000557942		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-3CDS	ENST00000473119	ENST00000453228		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000354410		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000558856		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000558812		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000338042		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000557785		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000449277		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000473119	ENST00000557942		TCGA	LD	PRAD	TCGA-G9-6361-01A	GPALPP1	chr13	45563877	+	MEF2A	chr15	100211528	+
Frame-shit	ENST00000509479	ENST00000265245		TCGA	LD	PRAD	TCGA-G9-6361-01A	MAML3	chr4	141074014	-	LSG1	chr3	194387301	-
5CDS-intron	ENST00000509479	ENST00000480853		TCGA	LD	PRAD	TCGA-G9-6361-01A	MAML3	chr4	141074014	-	LSG1	chr3	194387301	-
intron-3CDS	ENST00000327122	ENST00000265245		TCGA	LD	PRAD	TCGA-G9-6361-01A	MAML3	chr4	141074014	-	LSG1	chr3	194387301	-
intron-intron	ENST00000327122	ENST00000480853		TCGA	LD	PRAD	TCGA-G9-6361-01A	MAML3	chr4	141074014	-	LSG1	chr3	194387301	-
intron-3CDS	ENST00000398940	ENST00000265245		TCGA	LD	PRAD	TCGA-G9-6361-01A	MAML3	chr4	141074014	-	LSG1	chr3	194387301	-
intron-intron	ENST00000398940	ENST00000480853		TCGA	LD	PRAD	TCGA-G9-6361-01A	MAML3	chr4	141074014	-	LSG1	chr3	194387301	-
5UTR-intron	ENST00000471642	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000471642	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000471642	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000471642	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000368336	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000368336	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000368336	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000368336	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000343043	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000343043	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000343043	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000343043	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
3UTR-intron	ENST00000496863	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
3UTR-intron	ENST00000496863	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
3UTR-intron	ENST00000496863	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
3UTR-intron	ENST00000496863	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000535183	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000535183	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000535183	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000535183	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000421487	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000421487	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000421487	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000421487	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000465375	ENST00000368487		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000465375	ENST00000368489		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000465375	ENST00000426445		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-intron	ENST00000465375	ENST00000341822		TCGA	LD	PRAD	TCGA-G9-6363-01A	DAP3	chr1	155658965	+	ATP8B2	chr1	154317447	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6363-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000338458	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
5CDS-5UTR	ENST00000338458	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
5CDS-5UTR	ENST00000338458	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
5CDS-intron	ENST00000338458	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000496106	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000496106	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000496106	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-intron	ENST00000496106	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000498517	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000498517	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000498517	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-intron	ENST00000498517	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000296315	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000296315	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000296315	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-intron	ENST00000296315	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000413728	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000413728	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000413728	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-intron	ENST00000413728	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000497267	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000497267	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000497267	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-intron	ENST00000497267	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000495373	ENST00000431842		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000495373	ENST00000493960		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-5UTR	ENST00000495373	ENST00000355628		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
intron-intron	ENST00000495373	ENST00000485156		TCGA	LD	PRAD	TCGA-G9-6364-01A	ARHGEF3	chr3	57069116	-	FAM208A	chr3	56697600	-
5UTR-3CDS	ENST00000512055	ENST00000264995		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-3CDS	ENST00000512055	ENST00000425847		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-intron	ENST00000512055	ENST00000506946		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-3CDS	ENST00000429747	ENST00000264995		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-3CDS	ENST00000429747	ENST00000425847		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-intron	ENST00000429747	ENST00000506946		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-3CDS	ENST00000512332	ENST00000264995		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-3CDS	ENST00000512332	ENST00000425847		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-intron	ENST00000512332	ENST00000506946		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-3CDS	ENST00000511604	ENST00000264995		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-3CDS	ENST00000511604	ENST00000425847		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
5UTR-intron	ENST00000511604	ENST00000506946		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-3CDS	ENST00000502818	ENST00000264995		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-3CDS	ENST00000502818	ENST00000425847		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-intron	ENST00000502818	ENST00000506946		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-3CDS	ENST00000503204	ENST00000264995		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-3CDS	ENST00000503204	ENST00000425847		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
intron-intron	ENST00000503204	ENST00000506946		TCGA	LD	PRAD	TCGA-G9-6364-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131219365	-
In-frame	ENST00000369983	ENST00000448841		TCGA	LD	PRAD	TCGA-G9-6364-01A	GBF1	chr10	104103939	+	WBP1L	chr10	104569650	+
In-frame	ENST00000369983	ENST00000369889		TCGA	LD	PRAD	TCGA-G9-6364-01A	GBF1	chr10	104103939	+	WBP1L	chr10	104569650	+
intron-3CDS	ENST00000476019	ENST00000448841		TCGA	LD	PRAD	TCGA-G9-6364-01A	GBF1	chr10	104103939	+	WBP1L	chr10	104569650	+
intron-3CDS	ENST00000476019	ENST00000369889		TCGA	LD	PRAD	TCGA-G9-6364-01A	GBF1	chr10	104103939	+	WBP1L	chr10	104569650	+
5CDS-intron	ENST00000245680	ENST00000272746		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000359761		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000409415		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000392547		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000392546		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000409891		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000467149		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000245680	ENST00000410117		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000272746		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000359761		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000409415		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000392547		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000392546		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000409891		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000467149		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
intron-intron	ENST00000470204	ENST00000410117		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000272746		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000359761		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000409415		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000392547		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000392546		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000409891		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000467149		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
5CDS-intron	ENST00000409342	ENST00000410117		TCGA	LD	PRAD	TCGA-G9-6364-01A	SLC35F5	chr2	114508002	-	WIPF1	chr2	175541852	-
In-frame	ENST00000448841	ENST00000371953		TCGA	LD	PRAD	TCGA-G9-6364-01A	WBP1L	chr10	104557852	+	PTEN	chr10	89692770	+
5CDS-intron	ENST00000448841	ENST00000472832		TCGA	LD	PRAD	TCGA-G9-6364-01A	WBP1L	chr10	104557852	+	PTEN	chr10	89692770	+
In-frame	ENST00000369889	ENST00000371953		TCGA	LD	PRAD	TCGA-G9-6364-01A	WBP1L	chr10	104557852	+	PTEN	chr10	89692770	+
5CDS-intron	ENST00000369889	ENST00000472832		TCGA	LD	PRAD	TCGA-G9-6364-01A	WBP1L	chr10	104557852	+	PTEN	chr10	89692770	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-6365-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000336375	ENST00000259523		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000336375	ENST00000377970		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000336375	ENST00000524013		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000475741	ENST00000259523		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000475741	ENST00000377970		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000475741	ENST00000524013		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000351273	ENST00000259523		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000351273	ENST00000377970		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000351273	ENST00000524013		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
3UTR-5UTR	ENST00000489084	ENST00000259523		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
3UTR-5UTR	ENST00000489084	ENST00000377970		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
3UTR-5UTR	ENST00000489084	ENST00000524013		TCGA	LD	PRAD	TCGA-G9-6366-01A	ACPP	chr3	132051188	+	MYC	chr8	128750494	+
In-frame	ENST00000555449	ENST00000250448		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5CDS-5UTR	ENST00000555449	ENST00000540786		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5CDS-5UTR	ENST00000555449	ENST00000545425		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
In-frame	ENST00000331299	ENST00000250448		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5CDS-5UTR	ENST00000331299	ENST00000540786		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5CDS-5UTR	ENST00000331299	ENST00000545425		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5UTR-3CDS	ENST00000557611	ENST00000250448		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5UTR-5UTR	ENST00000557611	ENST00000540786		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5UTR-5UTR	ENST00000557611	ENST00000545425		TCGA	LD	PRAD	TCGA-G9-6366-01A	SLC25A21	chr14	37344160	-	FOXA1	chr14	38061915	-
5CDS-5UTR	ENST00000265881	ENST00000251921		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000265881	ENST00000536271		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000265881	ENST00000424269		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000265881	ENST00000536312		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000544196	ENST00000251921		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000544196	ENST00000536271		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000544196	ENST00000424269		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000544196	ENST00000536312		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000539754	ENST00000251921		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000539754	ENST00000536271		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000539754	ENST00000424269		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000539754	ENST00000536312		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000539275	ENST00000251921		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000539275	ENST00000536271		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-intron	ENST00000539275	ENST00000424269		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5CDS-5UTR	ENST00000539275	ENST00000536312		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-5UTR	ENST00000538791	ENST00000251921		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-intron	ENST00000538791	ENST00000536271		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-intron	ENST00000538791	ENST00000424269		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-5UTR	ENST00000538791	ENST00000536312		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-5UTR	ENST00000544507	ENST00000251921		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-intron	ENST00000544507	ENST00000536271		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-intron	ENST00000544507	ENST00000424269		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
intron-5UTR	ENST00000544507	ENST00000536312		TCGA	LD	PRAD	TCGA-G9-6371-01A	REXO2	chr11	114310397	+	NXPE1	chr11	114423602	-
5UTR-3CDS	ENST00000332149	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000332149	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000319349		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000393664		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000538265		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545954		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	LD	PRAD	TCGA-G9-6371-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000393709	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000496961	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
intron-intron	ENST00000533024	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000310611	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000527072	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000420578	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000528785	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000369868	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
5CDS-intron	ENST00000430195	ENST00000420853		TCGA	LD	PRAD	TCGA-G9-6373-01A	CYB561D1	chr1	110036909	+	CYMP	chr1	111025397	+
In-frame	ENST00000296233	ENST00000360370		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
In-frame	ENST00000296233	ENST00000346785		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
In-frame	ENST00000296233	ENST00000383598		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
In-frame	ENST00000296233	ENST00000315891		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
In-frame	ENST00000296233	ENST00000508835		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
5CDS-5UTR	ENST00000296233	ENST00000514023		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
intron-3CDS	ENST00000509675	ENST00000360370		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
intron-3CDS	ENST00000509675	ENST00000346785		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
intron-3CDS	ENST00000509675	ENST00000383598		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
intron-3CDS	ENST00000509675	ENST00000315891		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
intron-3CDS	ENST00000509675	ENST00000508835		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
intron-5UTR	ENST00000509675	ENST00000514023		TCGA	LD	PRAD	TCGA-G9-6377-01A	KLF15	chr3	126070684	-	SLC41A3	chr3	125752521	-
5CDS-5UTR	ENST00000301015	ENST00000414689		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5CDS-5UTR	ENST00000301015	ENST00000279396		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5CDS-5UTR	ENST00000301015	ENST00000561899		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5CDS-5UTR	ENST00000301015	ENST00000566848		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5UTR-5UTR	ENST00000327397	ENST00000414689		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5UTR-5UTR	ENST00000327397	ENST00000279396		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5UTR-5UTR	ENST00000327397	ENST00000561899		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
5UTR-5UTR	ENST00000327397	ENST00000566848		TCGA	LD	PRAD	TCGA-G9-6377-01A	PIEZO1	chr16	88785982	-	TMEM219	chr16	29974431	+
In-frame	ENST00000349714	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000349714	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
In-frame	ENST00000359226	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000359226	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
intron-3CDS	ENST00000374384	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
intron-intron	ENST00000374384	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
In-frame	ENST00000374380	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000374380	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
In-frame	ENST00000374385	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000374385	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
Frame-shit	ENST00000374377	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000374377	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
In-frame	ENST00000397556	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000397556	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
In-frame	ENST00000407996	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000407996	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
Frame-shit	ENST00000540457	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
5CDS-intron	ENST00000540457	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
3UTR-3CDS	ENST00000542501	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
3UTR-intron	ENST00000542501	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
intron-3CDS	ENST00000397554	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
intron-intron	ENST00000397554	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
intron-3CDS	ENST00000491125	ENST00000081029		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
intron-intron	ENST00000491125	ENST00000538315		TCGA	LD	PRAD	TCGA-G9-6377-01A	UQCC1	chr20	33902491	-	MRPS35	chr12	27888380	+
3UTR-3CDS	ENST00000409454	ENST00000336665		TCGA	LD	PRAD	TCGA-G9-6379-01A	HMGN2P46	chr15	45808090	+	AGAP1	chr2	236658998	+
3UTR-3CDS	ENST00000409454	ENST00000304032		TCGA	LD	PRAD	TCGA-G9-6379-01A	HMGN2P46	chr15	45808090	+	AGAP1	chr2	236658998	+
3UTR-3CDS	ENST00000409454	ENST00000409538		TCGA	LD	PRAD	TCGA-G9-6379-01A	HMGN2P46	chr15	45808090	+	AGAP1	chr2	236658998	+
3UTR-3CDS	ENST00000409454	ENST00000428334		TCGA	LD	PRAD	TCGA-G9-6379-01A	HMGN2P46	chr15	45808090	+	AGAP1	chr2	236658998	+
3UTR-3CDS	ENST00000409454	ENST00000409457		TCGA	LD	PRAD	TCGA-G9-6379-01A	HMGN2P46	chr15	45808090	+	AGAP1	chr2	236658998	+
5CDS-5UTR	ENST00000409236	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409236	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409236	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409236	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000356421	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000356421	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000356421	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000356421	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000317233	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000317233	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000317233	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000317233	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409579	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409579	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409579	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
5CDS-5UTR	ENST00000409579	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000483600	ENST00000332149		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000483600	ENST00000398585		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000483600	ENST00000458356		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
intron-5UTR	ENST00000483600	ENST00000497881		TCGA	LD	PRAD	TCGA-G9-6384-01A	AFF3	chr2	100623094	-	TMPRSS2	chr21	42870116	-
In-frame	ENST00000380502	ENST00000232603		TCGA	LD	PRAD	TCGA-G9-6384-01A	HAUS6	chr9	19102522	-	MORC1	chr3	108725938	-
5CDS-intron	ENST00000380502	ENST00000483760		TCGA	LD	PRAD	TCGA-G9-6384-01A	HAUS6	chr9	19102522	-	MORC1	chr3	108725938	-
intron-3CDS	ENST00000380496	ENST00000232603		TCGA	LD	PRAD	TCGA-G9-6384-01A	HAUS6	chr9	19102522	-	MORC1	chr3	108725938	-
intron-intron	ENST00000380496	ENST00000483760		TCGA	LD	PRAD	TCGA-G9-6384-01A	HAUS6	chr9	19102522	-	MORC1	chr3	108725938	-
Frame-shit	ENST00000225308	ENST00000331493		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000225308	ENST00000517484		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000225308	ENST00000520802		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
Frame-shit	ENST00000377095	ENST00000331493		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000377095	ENST00000517484		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000377095	ENST00000520802		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
Frame-shit	ENST00000590194	ENST00000331493		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000590194	ENST00000517484		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000590194	ENST00000520802		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
In-frame	ENST00000586016	ENST00000331493		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000586016	ENST00000517484		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000586016	ENST00000520802		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
Frame-shit	ENST00000537904	ENST00000331493		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000537904	ENST00000517484		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
5CDS-intron	ENST00000537904	ENST00000520802		TCGA	LD	PRAD	TCGA-G9-6494-01A	SLC25A39	chr17	42398426	-	EFCAB13	chr17	45438744	+
Frame-shit	ENST00000381295	ENST00000360096		TCGA	LD	PRAD	TCGA-G9-6496-01A	EXOC1	chr4	56726707	+	ARL9	chr4	57389863	+
Frame-shit	ENST00000346134	ENST00000360096		TCGA	LD	PRAD	TCGA-G9-6496-01A	EXOC1	chr4	56726707	+	ARL9	chr4	57389863	+
Frame-shit	ENST00000349598	ENST00000360096		TCGA	LD	PRAD	TCGA-G9-6496-01A	EXOC1	chr4	56726707	+	ARL9	chr4	57389863	+
5CDS-5UTR	ENST00000406875	ENST00000056217		TCGA	LD	PRAD	TCGA-G9-6496-01A	HIPK2	chr7	139311347	-	ARHGEF5	chr7	144059751	+
5CDS-intron	ENST00000406875	ENST00000471847		TCGA	LD	PRAD	TCGA-G9-6496-01A	HIPK2	chr7	139311347	-	ARHGEF5	chr7	144059751	+
5CDS-5UTR	ENST00000428878	ENST00000056217		TCGA	LD	PRAD	TCGA-G9-6496-01A	HIPK2	chr7	139311347	-	ARHGEF5	chr7	144059751	+
5CDS-intron	ENST00000428878	ENST00000471847		TCGA	LD	PRAD	TCGA-G9-6496-01A	HIPK2	chr7	139311347	-	ARHGEF5	chr7	144059751	+
5CDS-5UTR	ENST00000342645	ENST00000056217		TCGA	LD	PRAD	TCGA-G9-6496-01A	HIPK2	chr7	139311347	-	ARHGEF5	chr7	144059751	+
5CDS-intron	ENST00000342645	ENST00000471847		TCGA	LD	PRAD	TCGA-G9-6496-01A	HIPK2	chr7	139311347	-	ARHGEF5	chr7	144059751	+
5CDS-intron	ENST00000359523	ENST00000271417		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
5CDS-intron	ENST00000359523	ENST00000529387		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
5CDS-intron	ENST00000359523	ENST00000528703		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
5CDS-intron	ENST00000359523	ENST00000526687		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
5CDS-intron	ENST00000359523	ENST00000469934		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
5CDS-intron	ENST00000359523	ENST00000525740		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
5CDS-intron	ENST00000359523	ENST00000529071		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000271417		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000529387		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000528703		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000526687		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000469934		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000525740		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000392121	ENST00000529071		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000271417		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000529387		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000528703		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000526687		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000469934		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000525740		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
intron-intron	ENST00000474859	ENST00000529071		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000271417		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000529387		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000528703		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000526687		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000469934		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000525740		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
3UTR-intron	ENST00000403379	ENST00000529071		TCGA	LD	PRAD	TCGA-G9-6499-01A	MPZL1	chr1	167745403	+	ILDR2	chr1	166877341	-
In-frame	ENST00000263666	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
In-frame	ENST00000263666	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
In-frame	ENST00000263666	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000263666	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000263666	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000263666	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000263666	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000263666	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000263666	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000466780	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000466780	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000466780	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466780	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466780	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466780	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466780	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466780	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466780	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
In-frame	ENST00000308537	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
In-frame	ENST00000308537	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
In-frame	ENST00000308537	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000308537	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000308537	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000308537	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000308537	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000308537	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
5CDS-intron	ENST00000308537	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000462146	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000462146	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000462146	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000462146	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000462146	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000462146	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000462146	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000462146	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000462146	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000535920	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000535920	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000535920	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000535920	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000535920	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000535920	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000535920	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000535920	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000535920	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000479530	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000479530	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000479530	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000479530	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000479530	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000479530	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000479530	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000479530	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000479530	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000466348	ENST00000318789		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000466348	ENST00000475937		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-3CDS	ENST00000466348	ENST00000493089		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466348	ENST00000484350		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466348	ENST00000318779		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466348	ENST00000491238		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466348	ENST00000498215		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466348	ENST00000468577		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
intron-intron	ENST00000466348	ENST00000472382		TCGA	LD	PRAD	TCGA-G9-7509-01A	PDZRN3	chr3	73651505	-	FOXP1	chr3	71102924	-
Frame-shit	ENST00000226725	ENST00000402744		TCGA	LD	PRAD	TCGA-G9-7510-01A	KLHL2	chr4	166141211	+	CPE	chr4	166385542	+
Frame-shit	ENST00000514860	ENST00000402744		TCGA	LD	PRAD	TCGA-G9-7510-01A	KLHL2	chr4	166141211	+	CPE	chr4	166385542	+
5UTR-3CDS	ENST00000538127	ENST00000402744		TCGA	LD	PRAD	TCGA-G9-7510-01A	KLHL2	chr4	166141211	+	CPE	chr4	166385542	+
5UTR-3CDS	ENST00000421009	ENST00000402744		TCGA	LD	PRAD	TCGA-G9-7510-01A	KLHL2	chr4	166141211	+	CPE	chr4	166385542	+
intron-3CDS	ENST00000506761	ENST00000402744		TCGA	LD	PRAD	TCGA-G9-7510-01A	KLHL2	chr4	166141211	+	CPE	chr4	166385542	+
intron-3CDS	ENST00000509028	ENST00000402744		TCGA	LD	PRAD	TCGA-G9-7510-01A	KLHL2	chr4	166141211	+	CPE	chr4	166385542	+
In-frame	ENST00000370018	ENST00000370053		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000370018	ENST00000540534		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
In-frame	ENST00000318100	ENST00000370053		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000318100	ENST00000540534		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
In-frame	ENST00000508582	ENST00000370053		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000508582	ENST00000540534		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
In-frame	ENST00000360203	ENST00000370053		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
5CDS-5UTR	ENST00000360203	ENST00000540534		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
intron-3CDS	ENST00000488316	ENST00000370053		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
intron-5UTR	ENST00000488316	ENST00000540534		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
intron-3CDS	ENST00000370003	ENST00000370053		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
intron-5UTR	ENST00000370003	ENST00000540534		TCGA	LD	PRAD	TCGA-G9-7510-01A	RTEL1	chr20	62305446	+	STMN3	chr20	62275662	-
In-frame	ENST00000398399	ENST00000434693		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000396583		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000383767		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000445033		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000273139		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000383766		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000452462		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000398399	ENST00000456853		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
5CDS-intron	ENST00000398399	ENST00000473799		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000434693		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000396583		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000383767		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000445033		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000273139		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000383766		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000452462		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
In-frame	ENST00000383698	ENST00000456853		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
5CDS-intron	ENST00000383698	ENST00000473799		TCGA	LD	PRAD	TCGA-G9-7510-01A	VGLL3	chr3	87017740	-	RBMS3	chr3	29628605	+
5UTR-3CDS	ENST00000513200	ENST00000515393		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000513200	ENST00000429576		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000513200	ENST00000312216		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-intron	ENST00000513200	ENST00000505208		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-5UTR	ENST00000513200	ENST00000514040		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-5UTR	ENST00000513200	ENST00000505078		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000427991	ENST00000515393		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000427991	ENST00000429576		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
intron-3CDS	ENST00000427991	ENST00000312216		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
intron-intron	ENST00000427991	ENST00000505208		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
intron-5UTR	ENST00000427991	ENST00000514040		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
intron-5UTR	ENST00000427991	ENST00000505078		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000312498	ENST00000515393		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000312498	ENST00000429576		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000312498	ENST00000312216		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-intron	ENST00000312498	ENST00000505208		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-5UTR	ENST00000312498	ENST00000514040		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-5UTR	ENST00000312498	ENST00000505078		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000329378	ENST00000515393		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000329378	ENST00000429576		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-3CDS	ENST00000329378	ENST00000312216		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-intron	ENST00000329378	ENST00000505208		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-5UTR	ENST00000329378	ENST00000514040		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-5UTR	ENST00000329378	ENST00000505078		TCGA	LD	PRAD	TCGA-G9-7521-01A	KIAA0825	chr5	93954205	-	MCTP1	chr5	94050591	-
5UTR-intron	ENST00000233154	ENST00000535193		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000233154	ENST00000543771		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000233154	ENST00000381306		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000233154	ENST00000381309		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000233154	ENST00000442236		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000233154	ENST00000489243		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-3UTR	ENST00000233154	ENST00000536108		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-3UTR	ENST00000233154	ENST00000428870		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000233154	ENST00000401787		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000535193		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000543771		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000381306		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000381309		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000442236		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000489243		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-3UTR	ENST00000451463	ENST00000536108		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-3UTR	ENST00000451463	ENST00000428870		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
5UTR-intron	ENST00000451463	ENST00000401787		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000535193		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000543771		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000381306		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000381309		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000442236		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000489243		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-3UTR	ENST00000522586	ENST00000536108		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-3UTR	ENST00000522586	ENST00000428870		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000522586	ENST00000401787		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000535193		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000543771		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000381306		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000381309		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000442236		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000489243		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-3UTR	ENST00000393349	ENST00000536108		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-3UTR	ENST00000393349	ENST00000428870		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-intron	ENST00000393349	ENST00000401787		TCGA	LD	PRAD	TCGA-G9-7525-01A	NCK2	chr2	106361595	+	KDM4C	chr9	7165238	+
intron-3CDS	ENST00000335670	ENST00000290607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RORA	chr15	60884586	-	STARD9	chr15	43008875	+
intron-3CDS	ENST00000309157	ENST00000290607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RORA	chr15	60884586	-	STARD9	chr15	43008875	+
intron-3CDS	ENST00000261523	ENST00000290607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RORA	chr15	60884586	-	STARD9	chr15	43008875	+
In-frame	ENST00000449337	ENST00000290607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RORA	chr15	60884586	-	STARD9	chr15	43008875	+
intron-3CDS	ENST00000560004	ENST00000290607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RORA	chr15	60884586	-	STARD9	chr15	43008875	+
Frame-shit	ENST00000377921	ENST00000381602		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000397962		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000309776		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000509513		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000397959		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000381591		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000403354		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000381607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000402736		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000602682		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000381604		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000381584		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000558098		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000545619		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000377921	ENST00000535374		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
5CDS-3UTR	ENST00000377921	ENST00000473115		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000381602		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000397962		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000309776		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000509513		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000397959		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000381591		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000403354		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000381607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000402736		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000602682		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000381604		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000381584		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000558098		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000545619		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
Frame-shit	ENST00000345264	ENST00000535374		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
5CDS-3UTR	ENST00000345264	ENST00000473115		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000381602		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000397962		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000309776		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000509513		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000397959		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000381591		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000403354		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000381607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000402736		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000602682		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000381604		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000381584		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000558098		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000545619		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
In-frame	ENST00000602389	ENST00000535374		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
5CDS-3UTR	ENST00000602389	ENST00000473115		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000381602		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000397962		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000309776		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000509513		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000397959		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000381591		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000403354		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000381607		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000402736		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000602682		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000381604		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000381584		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000558098		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000545619		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3CDS	ENST00000464074	ENST00000535374		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
intron-3UTR	ENST00000464074	ENST00000473115		TCGA	LD	PRAD	TCGA-G9-7525-01A	RSU1	chr10	16824033	-	ZMYND11	chr10	294276	+
5UTR-intron	ENST00000536306	ENST00000413918		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000536306	ENST00000353548		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000536306	ENST00000443649		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000536306	ENST00000464942		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000536306	ENST00000267169		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000536306	ENST00000475784		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000543897	ENST00000413918		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000543897	ENST00000353548		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000543897	ENST00000443649		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000543897	ENST00000464942		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000543897	ENST00000267169		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-intron	ENST00000543897	ENST00000475784		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5CDS-intron	ENST00000336229	ENST00000413918		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5CDS-intron	ENST00000336229	ENST00000353548		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5CDS-intron	ENST00000336229	ENST00000443649		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5CDS-intron	ENST00000336229	ENST00000464942		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5CDS-intron	ENST00000336229	ENST00000267169		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5CDS-intron	ENST00000336229	ENST00000475784		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
intron-intron	ENST00000538116	ENST00000413918		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
intron-intron	ENST00000538116	ENST00000353548		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
intron-intron	ENST00000538116	ENST00000443649		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
intron-intron	ENST00000538116	ENST00000464942		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
intron-intron	ENST00000538116	ENST00000267169		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
intron-intron	ENST00000538116	ENST00000475784		TCGA	LD	PRAD	TCGA-G9-A9S0-01A	ZCCHC8	chr12	122983374	-	DIABLO	chr12	122702944	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000296684	ENST00000322611		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	NDUFS4	chr5	52856590	+	BASP1	chr5	17275317	+
5UTR-3CDS	ENST00000420415	ENST00000397457		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5UTR-3CDS	ENST00000420415	ENST00000543936		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5UTR-intron	ENST00000420415	ENST00000475998		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
In-frame	ENST00000360110	ENST00000397457		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
In-frame	ENST00000360110	ENST00000543936		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5CDS-intron	ENST00000360110	ENST00000475998		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
In-frame	ENST00000540528	ENST00000397457		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
In-frame	ENST00000540528	ENST00000543936		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5CDS-intron	ENST00000540528	ENST00000475998		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
Frame-shit	ENST00000392396	ENST00000397457		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
Frame-shit	ENST00000392396	ENST00000543936		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5CDS-intron	ENST00000392396	ENST00000475998		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5UTR-3CDS	ENST00000535031	ENST00000397457		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5UTR-3CDS	ENST00000535031	ENST00000543936		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5UTR-intron	ENST00000535031	ENST00000475998		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
intron-3CDS	ENST00000465288	ENST00000397457		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
intron-3CDS	ENST00000465288	ENST00000543936		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
intron-intron	ENST00000465288	ENST00000475998		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TFRC	chr3	195803935	-	BLOC1S5	chr6	8041501	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000332149	ENST00000374672		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42860321	-	KLF4	chr9	110251619	-
5CDS-5UTR	ENST00000398585	ENST00000374672		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42860321	-	KLF4	chr9	110251619	-
5CDS-5UTR	ENST00000458356	ENST00000374672		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42860321	-	KLF4	chr9	110251619	-
intron-5UTR	ENST00000497881	ENST00000374672		TCGA	LD	PRAD	TCGA-G9-A9S7-01A	TMPRSS2	chr21	42860321	-	KLF4	chr9	110251619	-
3UTR-3CDS	ENST00000409454	ENST00000278742		TCGA	LD	PRAD	TCGA-H9-7775-01A	HMGN2P46	chr15	45806161	+	ST14	chr11	130058009	+
In-frame	ENST00000360319	ENST00000409731		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000360319	ENST00000345517		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000360319	ENST00000409918		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000360319	ENST00000409624		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000422373	ENST00000409731		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000422373	ENST00000345517		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000422373	ENST00000409918		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000422373	ENST00000409624		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000369850	ENST00000409731		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000369850	ENST00000345517		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000369850	ENST00000409918		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000369850	ENST00000409624		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-3CDS	ENST00000369856	ENST00000409731		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-3CDS	ENST00000369856	ENST00000345517		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-intron	ENST00000369856	ENST00000409918		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-intron	ENST00000369856	ENST00000409624		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000344736	ENST00000409731		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
In-frame	ENST00000344736	ENST00000345517		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000344736	ENST00000409918		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
5CDS-intron	ENST00000344736	ENST00000409624		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-3CDS	ENST00000498491	ENST00000409731		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-3CDS	ENST00000498491	ENST00000345517		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-intron	ENST00000498491	ENST00000409918		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-intron	ENST00000498491	ENST00000409624		TCGA	LD	PRAD	TCGA-H9-A6BX-01A	FLNA	chrX	153595765	-	ACTG2	chr2	74140612	+
intron-3CDS	ENST00000553277	ENST00000552285		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000315970		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000439210		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000389146		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000413095		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000551035		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000435406		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000257966		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553277	ENST00000389142		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000552285		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000315970		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000439210		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000389146		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000413095		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000551035		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000435406		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000257966		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
In-frame	ENST00000243077	ENST00000389142		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000552285		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000315970		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000439210		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000389146		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000413095		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000551035		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000435406		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000257966		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000338962	ENST00000389142		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000552285		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000315970		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000439210		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000389146		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000413095		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000551035		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000435406		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000257966		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000554174	ENST00000389142		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000552285		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000315970		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000439210		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000389146		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000413095		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000551035		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000435406		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000257966		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
intron-3CDS	ENST00000553446	ENST00000389142		TCGA	LD	PRAD	TCGA-H9-A6BY-01A	LRP1	chr12	57552421	+	OS9	chr12	58114189	+
Frame-shit	ENST00000372391	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
Frame-shit	ENST00000372391	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
Frame-shit	ENST00000372391	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
5CDS-intron	ENST00000372391	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
Frame-shit	ENST00000372388	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
Frame-shit	ENST00000372388	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
Frame-shit	ENST00000372388	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
5CDS-intron	ENST00000372388	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
intron-3CDS	ENST00000459739	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
intron-3CDS	ENST00000459739	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
intron-3CDS	ENST00000459739	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
intron-intron	ENST00000459739	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7077-01A	DLG5	chr10	79593672	-	TMPRSS2	chr21	42842670	-
In-frame	ENST00000263253	ENST00000389586		TCGA	LD	PRAD	TCGA-HC-7077-01A	EP300	chr22	41546202	+	NXPE2	chr11	114568767	+
In-frame	ENST00000263253	ENST00000375475		TCGA	LD	PRAD	TCGA-HC-7077-01A	EP300	chr22	41546202	+	NXPE2	chr11	114568767	+
Frame-shit	ENST00000591000	ENST00000250498		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000591000	ENST00000489532		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000591000	ENST00000538631		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000591000	ENST00000543337		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
Frame-shit	ENST00000476151	ENST00000250498		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000476151	ENST00000489532		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000476151	ENST00000538631		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000476151	ENST00000543337		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
Frame-shit	ENST00000333432	ENST00000250498		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000333432	ENST00000489532		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000333432	ENST00000538631		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000333432	ENST00000543337		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
Frame-shit	ENST00000358438	ENST00000250498		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000358438	ENST00000489532		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000358438	ENST00000538631		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
5CDS-intron	ENST00000358438	ENST00000543337		TCGA	LD	PRAD	TCGA-HC-7077-01A	POLR2J2	chr7	102311999	-	DAD1	chr14	23044133	-
intron-3CDS	ENST00000470422	ENST00000392935		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
intron-3CDS	ENST00000470422	ENST00000522572		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
intron-3CDS	ENST00000470422	ENST00000521158		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
intron-3CDS	ENST00000470422	ENST00000022615		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000246043	ENST00000392935		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000246043	ENST00000522572		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000246043	ENST00000521158		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000246043	ENST00000022615		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377813	ENST00000392935		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377813	ENST00000522572		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377813	ENST00000521158		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377813	ENST00000022615		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377807	ENST00000392935		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377807	ENST00000522572		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377807	ENST00000521158		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000377807	ENST00000022615		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
In-frame	ENST00000360807	ENST00000392935		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
In-frame	ENST00000360807	ENST00000522572		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
In-frame	ENST00000360807	ENST00000521158		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
In-frame	ENST00000360807	ENST00000022615		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000455029	ENST00000392935		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000455029	ENST00000522572		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000455029	ENST00000521158		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
Frame-shit	ENST00000455029	ENST00000022615		TCGA	LD	PRAD	TCGA-HC-7077-01A	RRBP1	chr20	17610468	-	VDAC3	chr8	42257169	+
5UTR-3CDS	ENST00000332149	ENST00000319349		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000332149	ENST00000393664		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000538265		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545954		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000319349		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000393664		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000538265		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545954		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000319349		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000393664		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000538265		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545954		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000319349		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000393664		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000538265		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545954		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	LD	PRAD	TCGA-HC-7077-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000248211	ENST00000366933		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
intron-3UTR	ENST00000248211	ENST00000471021		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
3UTR-3CDS	ENST00000540927	ENST00000366933		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
3UTR-3UTR	ENST00000540927	ENST00000471021		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
5UTR-3CDS	ENST00000426665	ENST00000366933		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
5UTR-3UTR	ENST00000426665	ENST00000471021		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
intron-3CDS	ENST00000402932	ENST00000366933		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
intron-3UTR	ENST00000402932	ENST00000471021		TCGA	LD	PRAD	TCGA-HC-7077-01A	ZNF10	chr12	133707600	+	SPATA17	chr1	218036116	+
5UTR-intron	ENST00000372621	ENST00000372583		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-5UTR	ENST00000372621	ENST00000372584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000372621	ENST00000247584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000372621	ENST00000429157		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000372621	ENST00000460604		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000541520	ENST00000372583		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-5UTR	ENST00000541520	ENST00000372584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000541520	ENST00000247584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000541520	ENST00000429157		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
5UTR-intron	ENST00000541520	ENST00000460604		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000475060	ENST00000372583		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-5UTR	ENST00000475060	ENST00000372584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000475060	ENST00000247584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000475060	ENST00000429157		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000475060	ENST00000460604		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000543104	ENST00000372583		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-5UTR	ENST00000543104	ENST00000372584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000543104	ENST00000247584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000543104	ENST00000429157		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000543104	ENST00000460604		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000372616	ENST00000372583		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-5UTR	ENST00000372616	ENST00000372584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000372616	ENST00000247584		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000372616	ENST00000429157		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
intron-intron	ENST00000372616	ENST00000460604		TCGA	LD	PRAD	TCGA-HC-7078-01A	CTPS1	chr1	41445501	+	HIVEP3	chr1	42384195	-
In-frame	ENST00000393217	ENST00000279907		TCGA	LD	PRAD	TCGA-HC-7080-01A	LRRIQ1	chr12	85441248	+	UHRF1BP1L	chr12	100466591	-
In-frame	ENST00000393217	ENST00000356828		TCGA	LD	PRAD	TCGA-HC-7080-01A	LRRIQ1	chr12	85441248	+	UHRF1BP1L	chr12	100466591	-
In-frame	ENST00000393217	ENST00000545232		TCGA	LD	PRAD	TCGA-HC-7080-01A	LRRIQ1	chr12	85441248	+	UHRF1BP1L	chr12	100466591	-
intron-3CDS	ENST00000528777	ENST00000279907		TCGA	LD	PRAD	TCGA-HC-7080-01A	LRRIQ1	chr12	85441248	+	UHRF1BP1L	chr12	100466591	-
intron-3CDS	ENST00000528777	ENST00000356828		TCGA	LD	PRAD	TCGA-HC-7080-01A	LRRIQ1	chr12	85441248	+	UHRF1BP1L	chr12	100466591	-
intron-3CDS	ENST00000528777	ENST00000545232		TCGA	LD	PRAD	TCGA-HC-7080-01A	LRRIQ1	chr12	85441248	+	UHRF1BP1L	chr12	100466591	-
5CDS-5UTR	ENST00000508784	ENST00000296577		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
5CDS-3UTR	ENST00000508784	ENST00000502803		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
5CDS-5UTR	ENST00000513320	ENST00000296577		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
5CDS-3UTR	ENST00000513320	ENST00000502803		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
5CDS-5UTR	ENST00000379448	ENST00000296577		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
5CDS-3UTR	ENST00000379448	ENST00000502803		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
intron-5UTR	ENST00000511534	ENST00000296577		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
intron-3UTR	ENST00000511534	ENST00000502803		TCGA	LD	PRAD	TCGA-HC-7080-01A	ZNF827	chr4	146859517	-	ABCE1	chr4	146025538	+
5UTR-3CDS	ENST00000372037	ENST00000311575		TCGA	LD	PRAD	TCGA-HC-7209-01A	BMPR1A	chr10	88516676	+	FGFBP3	chr10	93669235	-
intron-3CDS	ENST00000480152	ENST00000311575		TCGA	LD	PRAD	TCGA-HC-7209-01A	BMPR1A	chr10	88516676	+	FGFBP3	chr10	93669235	-
In-frame	ENST00000336375	ENST00000356462		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000336375	ENST00000400345		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000336375	ENST00000589054		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000256832		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000382850		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000256830		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000336375	ENST00000588516		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000456986		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000435432		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000357895		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336375	ENST00000586263		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000336375	ENST00000456173		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000336375	ENST00000431212		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000475741	ENST00000356462		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000475741	ENST00000400345		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000475741	ENST00000589054		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000256832		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000382850		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000256830		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-3UTR	ENST00000475741	ENST00000588516		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000456986		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000435432		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000357895		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000475741	ENST00000586263		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000475741	ENST00000456173		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000475741	ENST00000431212		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000351273	ENST00000356462		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000351273	ENST00000400345		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000351273	ENST00000589054		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000256832		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000382850		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000256830		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000351273	ENST00000588516		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000456986		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000435432		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000357895		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000351273	ENST00000586263		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000351273	ENST00000456173		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000351273	ENST00000431212		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000489084	ENST00000356462		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000489084	ENST00000400345		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000489084	ENST00000589054		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000256832		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000382850		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000256830		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-3UTR	ENST00000489084	ENST00000588516		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000456986		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000435432		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000357895		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000489084	ENST00000586263		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000489084	ENST00000456173		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000489084	ENST00000431212		TCGA	LD	PRAD	TCGA-HC-7210-01A	ACPP	chr3	132056398	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000598463	ENST00000555220		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000598463	ENST00000555424		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000598463	ENST00000608382		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000598463	ENST00000394715		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-5UTR	ENST00000345523	ENST00000555220		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000345523	ENST00000555424		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000345523	ENST00000608382		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000345523	ENST00000394715		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-5UTR	ENST00000391812	ENST00000555220		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000391812	ENST00000555424		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000391812	ENST00000608382		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000391812	ENST00000394715		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-5UTR	ENST00000596655	ENST00000555220		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000596655	ENST00000555424		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000596655	ENST00000608382		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000596655	ENST00000394715		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-5UTR	ENST00000595794	ENST00000555220		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000595794	ENST00000555424		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000595794	ENST00000608382		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
intron-intron	ENST00000595794	ENST00000394715		TCGA	LD	PRAD	TCGA-HC-7211-01A	C19orf48	chr19	51306886	-	ZBTB25	chr14	64971664	-
Frame-shit	ENST00000452898	ENST00000336375		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
Frame-shit	ENST00000452898	ENST00000475741		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
Frame-shit	ENST00000452898	ENST00000351273		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
5CDS-intron	ENST00000452898	ENST00000489084		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
Frame-shit	ENST00000286364	ENST00000336375		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
Frame-shit	ENST00000286364	ENST00000475741		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
Frame-shit	ENST00000286364	ENST00000351273		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
5CDS-intron	ENST00000286364	ENST00000489084		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
intron-3CDS	ENST00000509118	ENST00000336375		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
intron-3CDS	ENST00000509118	ENST00000475741		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
intron-3CDS	ENST00000509118	ENST00000351273		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
intron-intron	ENST00000509118	ENST00000489084		TCGA	LD	PRAD	TCGA-HC-7211-01A	RASA2	chr3	141328908	+	ACPP	chr3	132063771	+
intron-3CDS	ENST00000460934	ENST00000374566		TCGA	LD	PRAD	TCGA-HC-7211-01A	SLC45A3	chr1	205628617	-	EPB41L4B	chr9	112042201	-
intron-3CDS	ENST00000460934	ENST00000374557		TCGA	LD	PRAD	TCGA-HC-7211-01A	SLC45A3	chr1	205628617	-	EPB41L4B	chr9	112042201	-
intron-3CDS	ENST00000367145	ENST00000374566		TCGA	LD	PRAD	TCGA-HC-7211-01A	SLC45A3	chr1	205628617	-	EPB41L4B	chr9	112042201	-
intron-3CDS	ENST00000367145	ENST00000374557		TCGA	LD	PRAD	TCGA-HC-7211-01A	SLC45A3	chr1	205628617	-	EPB41L4B	chr9	112042201	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7211-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000294309	ENST00000556818		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000294309	ENST00000554015		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000294309	ENST00000394712		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000294309	ENST00000358738		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-intron	ENST00000542467	ENST00000556818		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000542467	ENST00000554015		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000542467	ENST00000394712		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
5CDS-5UTR	ENST00000542467	ENST00000358738		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
3UTR-intron	ENST00000442692	ENST00000556818		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000442692	ENST00000554015		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000442692	ENST00000394712		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
3UTR-5UTR	ENST00000442692	ENST00000358738		TCGA	LD	PRAD	TCGA-HC-7211-01A	TPCN2	chr11	68854674	+	ZBTB1	chr14	64988205	+
In-frame	ENST00000216479	ENST00000453321		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
5CDS-5UTR	ENST00000216479	ENST00000409623		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
5CDS-intron	ENST00000216479	ENST00000425545		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
In-frame	ENST00000535854	ENST00000453321		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
5CDS-5UTR	ENST00000535854	ENST00000409623		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
5CDS-intron	ENST00000535854	ENST00000425545		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
intron-3CDS	ENST00000555517	ENST00000453321		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
intron-5UTR	ENST00000555517	ENST00000409623		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
intron-intron	ENST00000555517	ENST00000425545		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
intron-3CDS	ENST00000555457	ENST00000453321		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
intron-5UTR	ENST00000555457	ENST00000409623		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
intron-intron	ENST00000555457	ENST00000425545		TCGA	LD	PRAD	TCGA-HC-7212-01A	AHSA1	chr14	77931029	+	TMEM67	chr8	94770711	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7212-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000399262	ENST00000394375		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000399262	ENST00000608620		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000399262	ENST00000238983		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000399262	ENST00000355843		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-3CDS	ENST00000402544	ENST00000394375		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000402544	ENST00000608620		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000402544	ENST00000238983		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000402544	ENST00000355843		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-3CDS	ENST00000399251	ENST00000394375		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000399251	ENST00000608620		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000399251	ENST00000238983		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000399251	ENST00000355843		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-3CDS	ENST00000542921	ENST00000394375		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000542921	ENST00000608620		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000542921	ENST00000238983		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000542921	ENST00000355843		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-3CDS	ENST00000489372	ENST00000394375		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000489372	ENST00000608620		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000489372	ENST00000238983		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-5UTR	ENST00000489372	ENST00000355843		TCGA	LD	PRAD	TCGA-HC-7213-01A	JMJD1C	chr10	65281498	-	LIPF	chr10	90427044	+
intron-3CDS	ENST00000460934	ENST00000308158		TCGA	LD	PRAD	TCGA-HC-7213-01A	SLC45A3	chr1	205628617	-	PHYKPL	chr5	177638971	-
intron-5UTR	ENST00000460934	ENST00000481811		TCGA	LD	PRAD	TCGA-HC-7213-01A	SLC45A3	chr1	205628617	-	PHYKPL	chr5	177638971	-
intron-intron	ENST00000460934	ENST00000476170		TCGA	LD	PRAD	TCGA-HC-7213-01A	SLC45A3	chr1	205628617	-	PHYKPL	chr5	177638971	-
intron-3CDS	ENST00000367145	ENST00000308158		TCGA	LD	PRAD	TCGA-HC-7213-01A	SLC45A3	chr1	205628617	-	PHYKPL	chr5	177638971	-
intron-5UTR	ENST00000367145	ENST00000481811		TCGA	LD	PRAD	TCGA-HC-7213-01A	SLC45A3	chr1	205628617	-	PHYKPL	chr5	177638971	-
intron-intron	ENST00000367145	ENST00000476170		TCGA	LD	PRAD	TCGA-HC-7213-01A	SLC45A3	chr1	205628617	-	PHYKPL	chr5	177638971	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7230-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000409262	ENST00000260453		TCGA	LD	PRAD	TCGA-HC-7231-01A	TET3	chr2	74230293	+	MNS1	chr15	56756445	-
intron-intron	ENST00000409262	ENST00000566386		TCGA	LD	PRAD	TCGA-HC-7231-01A	TET3	chr2	74230293	+	MNS1	chr15	56756445	-
In-frame	ENST00000362042	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000362042	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000585291	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000585291	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000357480	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000357480	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000361665	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000361665	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000579481	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000579481	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000582155	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000582155	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000583378	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000583378	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000536222	ENST00000327064		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000536222	ENST00000344150		TCGA	LD	PRAD	TCGA-HC-7232-01A	NFE2L1	chr17	46134864	+	CARM1	chr19	11022860	+
In-frame	ENST00000405876	ENST00000552912		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
In-frame	ENST00000405876	ENST00000242591		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
5CDS-intron	ENST00000405876	ENST00000361948		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
5CDS-intron	ENST00000405876	ENST00000549009		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
In-frame	ENST00000312777	ENST00000552912		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
In-frame	ENST00000312777	ENST00000242591		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
5CDS-intron	ENST00000312777	ENST00000361948		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
5CDS-intron	ENST00000312777	ENST00000549009		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
intron-3CDS	ENST00000550780	ENST00000552912		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
intron-3CDS	ENST00000550780	ENST00000242591		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
intron-intron	ENST00000550780	ENST00000361948		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
intron-intron	ENST00000550780	ENST00000549009		TCGA	LD	PRAD	TCGA-HC-7232-01A	TCHP	chr12	110346742	+	IFT81	chr12	110641669	+
Frame-shit	ENST00000392314	ENST00000392415		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000392314	ENST00000410062		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000392314	ENST00000602710		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000392314	ENST00000602837		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000392314	ENST00000602959		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
5CDS-intron	ENST00000392314	ENST00000602475		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
5CDS-intron	ENST00000392314	ENST00000602632		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000272771	ENST00000392415		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000272771	ENST00000410062		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000272771	ENST00000602710		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000272771	ENST00000602837		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
Frame-shit	ENST00000272771	ENST00000602959		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
5CDS-intron	ENST00000272771	ENST00000602475		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
5CDS-intron	ENST00000272771	ENST00000602632		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000487771	ENST00000392415		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000487771	ENST00000410062		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000487771	ENST00000602710		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000487771	ENST00000602837		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000487771	ENST00000602959		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-intron	ENST00000487771	ENST00000602475		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-intron	ENST00000487771	ENST00000602632		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000409056	ENST00000392415		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000409056	ENST00000410062		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000409056	ENST00000602710		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000409056	ENST00000602837		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-3CDS	ENST00000409056	ENST00000602959		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-intron	ENST00000409056	ENST00000602475		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
intron-intron	ENST00000409056	ENST00000602632		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMEFF2	chr2	193044394	-	UBE2E3	chr2	181922420	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7232-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000536774	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000536774	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000536774	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000536774	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000536774	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000327441	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000327441	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000327441	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000327441	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000327441	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000539062	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000539062	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000539062	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000539062	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000539062	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000556451	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000556451	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000556451	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000556451	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000556451	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000396294	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000396294	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000396294	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000396294	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000396294	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000545536	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000545536	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000545536	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000545536	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000545536	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000537471	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000537471	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-3UTR	ENST00000537471	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000537471	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
5CDS-5UTR	ENST00000537471	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
intron-5UTR	ENST00000539174	ENST00000259119		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
intron-5UTR	ENST00000539174	ENST00000426052		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
intron-3UTR	ENST00000539174	ENST00000490989		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
intron-5UTR	ENST00000539174	ENST00000413427		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
intron-5UTR	ENST00000539174	ENST00000458537		TCGA	LD	PRAD	TCGA-HC-7233-01A	MIPOL1	chr14	37892154	+	SKIL	chr3	170077487	+
intron-3CDS	ENST00000337907	ENST00000229268		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000337907	ENST00000389231		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3UTR	ENST00000337907	ENST00000541969		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000377464	ENST00000229268		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000377464	ENST00000389231		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3UTR	ENST00000377464	ENST00000541969		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000400907	ENST00000229268		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000400907	ENST00000389231		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3UTR	ENST00000400907	ENST00000541969		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000400908	ENST00000229268		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000400908	ENST00000389231		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3UTR	ENST00000400908	ENST00000541969		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000476556	ENST00000229268		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000476556	ENST00000389231		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3UTR	ENST00000476556	ENST00000541969		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000460659	ENST00000229268		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3CDS	ENST00000460659	ENST00000389231		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
intron-3UTR	ENST00000460659	ENST00000541969		TCGA	LD	PRAD	TCGA-HC-7233-01A	RERE	chr1	8763114	-	USP5	chr12	6972350	+
Frame-shit	ENST00000515837	ENST00000513973		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
Frame-shit	ENST00000515837	ENST00000512866		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5CDS-5UTR	ENST00000515837	ENST00000283977		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5CDS-5UTR	ENST00000515837	ENST00000506587		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
Frame-shit	ENST00000334888	ENST00000513973		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
Frame-shit	ENST00000334888	ENST00000512866		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5CDS-5UTR	ENST00000334888	ENST00000283977		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5CDS-5UTR	ENST00000334888	ENST00000506587		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
Frame-shit	ENST00000398979	ENST00000513973		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
Frame-shit	ENST00000398979	ENST00000512866		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5CDS-5UTR	ENST00000398979	ENST00000283977		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5CDS-5UTR	ENST00000398979	ENST00000506587		TCGA	LD	PRAD	TCGA-HC-7233-01A	TMEM216	chr11	61161448	+	PGM3	chr6	83898517	-
5UTR-3CDS	ENST00000244769	ENST00000335449		TCGA	LD	PRAD	TCGA-HC-7736-01A	ATXN1	chr6	16753464	-	GLDN	chr15	51669646	+
5UTR-5UTR	ENST00000244769	ENST00000396399		TCGA	LD	PRAD	TCGA-HC-7736-01A	ATXN1	chr6	16753464	-	GLDN	chr15	51669646	+
5UTR-3CDS	ENST00000436367	ENST00000335449		TCGA	LD	PRAD	TCGA-HC-7736-01A	ATXN1	chr6	16753464	-	GLDN	chr15	51669646	+
5UTR-5UTR	ENST00000436367	ENST00000396399		TCGA	LD	PRAD	TCGA-HC-7736-01A	ATXN1	chr6	16753464	-	GLDN	chr15	51669646	+
5UTR-3CDS	ENST00000467008	ENST00000335449		TCGA	LD	PRAD	TCGA-HC-7736-01A	ATXN1	chr6	16753464	-	GLDN	chr15	51669646	+
5UTR-5UTR	ENST00000467008	ENST00000396399		TCGA	LD	PRAD	TCGA-HC-7736-01A	ATXN1	chr6	16753464	-	GLDN	chr15	51669646	+
5UTR-3CDS	ENST00000512055	ENST00000334444		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-3CDS	ENST00000512055	ENST00000265586		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-5UTR	ENST00000512055	ENST00000492216		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000512055	ENST00000427120		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000512055	ENST00000392579		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000512055	ENST00000382494		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000512055	ENST00000446941		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-3CDS	ENST00000429747	ENST00000334444		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-3CDS	ENST00000429747	ENST00000265586		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-5UTR	ENST00000429747	ENST00000492216		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000429747	ENST00000427120		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000429747	ENST00000392579		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000429747	ENST00000382494		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000429747	ENST00000446941		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000512332	ENST00000334444		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000512332	ENST00000265586		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-5UTR	ENST00000512332	ENST00000492216		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000512332	ENST00000427120		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000512332	ENST00000392579		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000512332	ENST00000382494		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000512332	ENST00000446941		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-3CDS	ENST00000511604	ENST00000334444		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-3CDS	ENST00000511604	ENST00000265586		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-5UTR	ENST00000511604	ENST00000492216		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000511604	ENST00000427120		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000511604	ENST00000392579		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000511604	ENST00000382494		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
5UTR-intron	ENST00000511604	ENST00000446941		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000502818	ENST00000334444		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000502818	ENST00000265586		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-5UTR	ENST00000502818	ENST00000492216		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000502818	ENST00000427120		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000502818	ENST00000392579		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000502818	ENST00000382494		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000502818	ENST00000446941		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000503204	ENST00000334444		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000503204	ENST00000265586		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-5UTR	ENST00000503204	ENST00000492216		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000503204	ENST00000427120		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000503204	ENST00000392579		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000503204	ENST00000382494		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-intron	ENST00000503204	ENST00000446941		TCGA	LD	PRAD	TCGA-HC-7736-01A	CPNE4	chr3	131753411	-	ABCC5	chr3	183700412	-
intron-3CDS	ENST00000470422	ENST00000217246		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000470422	ENST00000310348		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000470422	ENST00000464883		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000470422	ENST00000402914		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000470422	ENST00000378058		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000470422	ENST00000407045		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000246043	ENST00000217246		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000246043	ENST00000310348		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000246043	ENST00000464883		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-5UTR	ENST00000246043	ENST00000402914		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000246043	ENST00000378058		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
intron-intron	ENST00000246043	ENST00000407045		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377813	ENST00000217246		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377813	ENST00000310348		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377813	ENST00000464883		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000377813	ENST00000402914		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377813	ENST00000378058		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377813	ENST00000407045		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377807	ENST00000217246		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000377807	ENST00000310348		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377807	ENST00000464883		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000377807	ENST00000402914		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377807	ENST00000378058		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000377807	ENST00000407045		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000360807	ENST00000217246		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000360807	ENST00000310348		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000360807	ENST00000464883		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000360807	ENST00000402914		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000360807	ENST00000378058		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000360807	ENST00000407045		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000455029	ENST00000217246		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-3CDS	ENST00000455029	ENST00000310348		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000455029	ENST00000464883		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-5UTR	ENST00000455029	ENST00000402914		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000455029	ENST00000378058		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
5UTR-intron	ENST00000455029	ENST00000407045		TCGA	LD	PRAD	TCGA-HC-7736-01A	RRBP1	chr20	17662673	-	MACROD2	chr20	15843390	+
In-frame	ENST00000371065	ENST00000237247		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
In-frame	ENST00000371065	ENST00000371039		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
In-frame	ENST00000371065	ENST00000371035		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
5CDS-intron	ENST00000371065	ENST00000468286		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
5CDS-intron	ENST00000371065	ENST00000371036		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
5CDS-intron	ENST00000371065	ENST00000371037		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
5CDS-intron	ENST00000371065	ENST00000435165		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-3CDS	ENST00000484243	ENST00000237247		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-3CDS	ENST00000484243	ENST00000371039		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-3CDS	ENST00000484243	ENST00000371035		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-intron	ENST00000484243	ENST00000468286		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-intron	ENST00000484243	ENST00000371036		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-intron	ENST00000484243	ENST00000371037		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
3UTR-intron	ENST00000484243	ENST00000435165		TCGA	LD	PRAD	TCGA-HC-7737-01A	LEPROT	chr1	65886423	+	SGIP1	chr1	67184977	+
intron-3CDS	ENST00000400256	ENST00000259396		TCGA	LD	PRAD	TCGA-HC-7740-01A	COLEC12	chr18	346771	-	ORM1	chr9	117085939	+
intron-3CDS	ENST00000400256	ENST00000538816		TCGA	LD	PRAD	TCGA-HC-7740-01A	COLEC12	chr18	346771	-	ORM1	chr9	117085939	+
intron-intron	ENST00000400256	ENST00000477456		TCGA	LD	PRAD	TCGA-HC-7740-01A	COLEC12	chr18	346771	-	ORM1	chr9	117085939	+
5CDS-5UTR	ENST00000422447	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000422447	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000422447	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000430553	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000430553	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000430553	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
intron-5UTR	ENST00000396222	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
intron-5UTR	ENST00000396222	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
intron-5UTR	ENST00000396222	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000227157	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000227157	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000227157	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000540430	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000540430	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000540430	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000379412	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000379412	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000379412	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000542179	ENST00000400520		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000542179	ENST00000496748		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000542179	ENST00000375111		TCGA	LD	PRAD	TCGA-HC-7744-01A	LDHA	chr11	18425358	+	PLA2G2A	chr1	20305372	-
In-frame	ENST00000271526	ENST00000413272		TCGA	LD	PRAD	TCGA-HC-7744-01A	PRCC	chr1	156738031	+	NUGGC	chr8	27913571	-
In-frame	ENST00000271526	ENST00000341513		TCGA	LD	PRAD	TCGA-HC-7744-01A	PRCC	chr1	156738031	+	NUGGC	chr8	27913571	-
In-frame	ENST00000353233	ENST00000413272		TCGA	LD	PRAD	TCGA-HC-7744-01A	PRCC	chr1	156738031	+	NUGGC	chr8	27913571	-
In-frame	ENST00000353233	ENST00000341513		TCGA	LD	PRAD	TCGA-HC-7744-01A	PRCC	chr1	156738031	+	NUGGC	chr8	27913571	-
intron-3CDS	ENST00000491853	ENST00000413272		TCGA	LD	PRAD	TCGA-HC-7744-01A	PRCC	chr1	156738031	+	NUGGC	chr8	27913571	-
intron-3CDS	ENST00000491853	ENST00000341513		TCGA	LD	PRAD	TCGA-HC-7744-01A	PRCC	chr1	156738031	+	NUGGC	chr8	27913571	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7744-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000251808	ENST00000520552		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000251808	ENST00000335659		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000251808	ENST00000519597		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000251808	ENST00000520311		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000251808	ENST00000519316		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-intron	ENST00000251808	ENST00000524319		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000395927	ENST00000520552		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000395927	ENST00000335659		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000395927	ENST00000519597		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000395927	ENST00000520311		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000395927	ENST00000519316		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5CDS-intron	ENST00000395927	ENST00000524319		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000517674	ENST00000520552		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000517674	ENST00000335659		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000517674	ENST00000519597		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000517674	ENST00000520311		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
intron-5UTR	ENST00000517674	ENST00000519316		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
intron-intron	ENST00000517674	ENST00000524319		TCGA	LD	PRAD	TCGA-HC-7745-01A	GRHL2	chr8	102676746	+	ANKRD46	chr8	101545539	-
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7745-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-3CDS	ENST00000398907	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000398907	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000398907	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000398907	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000398905	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000398905	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000398905	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000398905	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000288319	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000288319	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000288319	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000288319	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-3CDS	ENST00000398897	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-3CDS	ENST00000398897	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-3CDS	ENST00000398897	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-intron	ENST00000398897	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000398911	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000398911	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000398911	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000398911	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000398910	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000398910	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000398910	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000398910	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000417133	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000417133	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000417133	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000417133	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000442448	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000442448	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
In-frame	ENST00000442448	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000442448	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000453032	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000453032	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000453032	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000453032	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000398919	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000398919	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000398919	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000398919	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000429727	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000429727	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000429727	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000429727	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-3CDS	ENST00000485493	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-3CDS	ENST00000485493	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-3CDS	ENST00000485493	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
5UTR-intron	ENST00000485493	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-7747-01A	ERG	chr21	39947586	-	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000337195	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
Frame-shit	ENST00000531469	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
Frame-shit	ENST00000494626	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
In-frame	ENST00000411419	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
Frame-shit	ENST00000476817	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
intron-3CDS	ENST00000309035	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
intron-3CDS	ENST00000334808	ENST00000368836		TCGA	LD	PRAD	TCGA-HC-7748-01A	CTBP2	chr10	126727566	-	METTL10	chr10	126463351	-
5CDS-intron	ENST00000251157	ENST00000460934		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
5CDS-5UTR	ENST00000251157	ENST00000367145		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
5CDS-intron	ENST00000340370	ENST00000460934		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
5CDS-5UTR	ENST00000340370	ENST00000367145		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
intron-intron	ENST00000489185	ENST00000460934		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
intron-5UTR	ENST00000489185	ENST00000367145		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
intron-intron	ENST00000404627	ENST00000460934		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
intron-5UTR	ENST00000404627	ENST00000367145		TCGA	LD	PRAD	TCGA-HC-7748-01A	DOCK7	chr1	63018403	-	SLC45A3	chr1	205634014	-
intron-3CDS	ENST00000351698	ENST00000323786		TCGA	LD	PRAD	TCGA-HC-7748-01A	TOR1A	chr9	132576362	-	COG4	chr16	70524295	-
intron-intron	ENST00000351698	ENST00000393612		TCGA	LD	PRAD	TCGA-HC-7748-01A	TOR1A	chr9	132576362	-	COG4	chr16	70524295	-
intron-intron	ENST00000351698	ENST00000564653		TCGA	LD	PRAD	TCGA-HC-7748-01A	TOR1A	chr9	132576362	-	COG4	chr16	70524295	-
intron-3CDS	ENST00000473084	ENST00000323786		TCGA	LD	PRAD	TCGA-HC-7748-01A	TOR1A	chr9	132576362	-	COG4	chr16	70524295	-
intron-intron	ENST00000473084	ENST00000393612		TCGA	LD	PRAD	TCGA-HC-7748-01A	TOR1A	chr9	132576362	-	COG4	chr16	70524295	-
intron-intron	ENST00000473084	ENST00000564653		TCGA	LD	PRAD	TCGA-HC-7748-01A	TOR1A	chr9	132576362	-	COG4	chr16	70524295	-
5CDS-5UTR	ENST00000299575	ENST00000332427		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
5CDS-5UTR	ENST00000299575	ENST00000537507		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
5CDS-5UTR	ENST00000299575	ENST00000540510		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000539819	ENST00000332427		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000539819	ENST00000537507		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000539819	ENST00000540510		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000564241	ENST00000332427		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000564241	ENST00000537507		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000564241	ENST00000540510		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000566488	ENST00000332427		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000566488	ENST00000537507		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
intron-5UTR	ENST00000566488	ENST00000540510		TCGA	LD	PRAD	TCGA-HC-7749-01A	ATMIN	chr16	81069811	+	GPR19	chr12	12837441	-
5CDS-5UTR	ENST00000409600	ENST00000477723		TCGA	LD	PRAD	TCGA-HC-7749-01A	BZW1	chr2	201680484	+	WDR12	chr2	203772682	-
5CDS-5UTR	ENST00000409600	ENST00000261015		TCGA	LD	PRAD	TCGA-HC-7749-01A	BZW1	chr2	201680484	+	WDR12	chr2	203772682	-
5CDS-5UTR	ENST00000409226	ENST00000477723		TCGA	LD	PRAD	TCGA-HC-7749-01A	BZW1	chr2	201680484	+	WDR12	chr2	203772682	-
5CDS-5UTR	ENST00000409226	ENST00000261015		TCGA	LD	PRAD	TCGA-HC-7749-01A	BZW1	chr2	201680484	+	WDR12	chr2	203772682	-
5CDS-5UTR	ENST00000452790	ENST00000477723		TCGA	LD	PRAD	TCGA-HC-7749-01A	BZW1	chr2	201680484	+	WDR12	chr2	203772682	-
5CDS-5UTR	ENST00000452790	ENST00000261015		TCGA	LD	PRAD	TCGA-HC-7749-01A	BZW1	chr2	201680484	+	WDR12	chr2	203772682	-
intron-5UTR	ENST00000597275	ENST00000338270		TCGA	LD	PRAD	TCGA-HC-7749-01A	CCDC120	chrX	48916626	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000496529	ENST00000338270		TCGA	LD	PRAD	TCGA-HC-7749-01A	CCDC120	chrX	48916626	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000376396	ENST00000338270		TCGA	LD	PRAD	TCGA-HC-7749-01A	CCDC120	chrX	48916626	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000422185	ENST00000338270		TCGA	LD	PRAD	TCGA-HC-7749-01A	CCDC120	chrX	48916626	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000603986	ENST00000338270		TCGA	LD	PRAD	TCGA-HC-7749-01A	CCDC120	chrX	48916626	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000536628	ENST00000338270		TCGA	LD	PRAD	TCGA-HC-7749-01A	CCDC120	chrX	48916626	+	ERAS	chrX	48687491	+
5CDS-3UTR	ENST00000263390	ENST00000221671		TCGA	LD	PRAD	TCGA-HC-7749-01A	MED26	chr19	16738683	-	C19orf44	chr19	16630905	+
5CDS-intron	ENST00000263390	ENST00000594035		TCGA	LD	PRAD	TCGA-HC-7749-01A	MED26	chr19	16738683	-	C19orf44	chr19	16630905	+
5CDS-intron	ENST00000263881	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
5CDS-intron	ENST00000263881	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-intron	ENST00000437545	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-intron	ENST00000437545	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
5CDS-intron	ENST00000341681	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
5CDS-intron	ENST00000341681	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
5CDS-intron	ENST00000484274	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
5CDS-intron	ENST00000484274	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-intron	ENST00000536018	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-intron	ENST00000536018	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-intron	ENST00000474502	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-intron	ENST00000474502	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-7817-01B	MAP4K3	chr2	39664033	-	TMEM178A	chr2	39892227	+
intron-3UTR	ENST00000220592	ENST00000276440		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-intron	ENST00000220592	ENST00000410074		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-intron	ENST00000220592	ENST00000481100		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-3UTR	ENST00000519980	ENST00000276440		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-intron	ENST00000519980	ENST00000410074		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-intron	ENST00000519980	ENST00000481100		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-3UTR	ENST00000517293	ENST00000276440		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-intron	ENST00000517293	ENST00000410074		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
intron-intron	ENST00000517293	ENST00000481100		TCGA	LD	PRAD	TCGA-HC-7818-01A	AGO2	chr8	141542120	-	DOCK5	chr8	25273041	+
In-frame	ENST00000316788	ENST00000601302		TCGA	LD	PRAD	TCGA-HC-7818-01A	AP3S1	chr5	115177803	+	ARL14EPL	chr5	115389711	+
intron-3CDS	ENST00000505423	ENST00000601302		TCGA	LD	PRAD	TCGA-HC-7818-01A	AP3S1	chr5	115177803	+	ARL14EPL	chr5	115389711	+
5UTR-3CDS	ENST00000377560	ENST00000441917		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000377560	ENST00000541887		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000377560	ENST00000261819		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000377560	ENST00000535482		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000377560	ENST00000544314		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000377560	ENST00000344395		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000377560	ENST00000536366		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000430131	ENST00000441917		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000430131	ENST00000541887		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000430131	ENST00000261819		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000430131	ENST00000535482		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000430131	ENST00000544314		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000430131	ENST00000344395		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000430131	ENST00000536366		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000550722	ENST00000441917		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000550722	ENST00000541887		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-3CDS	ENST00000550722	ENST00000261819		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000550722	ENST00000535482		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000550722	ENST00000544314		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000550722	ENST00000344395		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
5UTR-intron	ENST00000550722	ENST00000536366		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-3CDS	ENST00000549141	ENST00000441917		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-3CDS	ENST00000549141	ENST00000541887		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-3CDS	ENST00000549141	ENST00000261819		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-intron	ENST00000549141	ENST00000535482		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-intron	ENST00000549141	ENST00000544314		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-intron	ENST00000549141	ENST00000344395		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
intron-intron	ENST00000549141	ENST00000536366		TCGA	LD	PRAD	TCGA-HC-7818-01A	HECTD4	chr12	112819756	-	ANAPC5	chr12	121775195	-
In-frame	ENST00000349155	ENST00000300738		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000349155	ENST00000423050		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000349155	ENST00000534285		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000349155	ENST00000537197		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000349155	ENST00000528470		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
In-frame	ENST00000257566	ENST00000300738		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000257566	ENST00000423050		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000257566	ENST00000534285		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000257566	ENST00000537197		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5CDS-intron	ENST00000257566	ENST00000528470		TCGA	LD	PRAD	TCGA-HC-7818-01A	TBX3	chr12	115118684	-	RRM1	chr11	4127276	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-7818-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
Frame-shit	ENST00000311275	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000311275	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000311275	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000311275	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000360911	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000360911	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000360911	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000360911	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000458360	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000458360	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000458360	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000458360	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000262975	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000262975	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000262975	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000262975	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000471951	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000471951	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000471951	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000471951	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000352431	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000352431	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000352431	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000352431	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000396281	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000396281	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000396281	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000396281	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000446994	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000446994	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000446994	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000446994	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000536340	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000536340	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000536340	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000536340	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000355972	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000355972	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000355972	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000355972	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000540497	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000540497	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000540497	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000540497	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000461685	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000461685	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000461685	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000461685	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000372023	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
In-frame	ENST00000372023	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000372023	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5CDS-intron	ENST00000372023	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5UTR-3CDS	ENST00000468376	ENST00000555685		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5UTR-3CDS	ENST00000468376	ENST00000354280		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5UTR-intron	ENST00000468376	ENST00000409554		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
5UTR-intron	ENST00000468376	ENST00000336443		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN	chr20	44171506	-
Frame-shit	ENST00000311275	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000360911	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000458360	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
Frame-shit	ENST00000262975	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000471951	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000352431	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000396281	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
Frame-shit	ENST00000446994	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000536340	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
Frame-shit	ENST00000355972	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000540497	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000461685	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000372023	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
5UTR-3CDS	ENST00000468376	ENST00000504988		TCGA	LD	PRAD	TCGA-HC-7818-01A	ZMYND8	chr20	45905058	-	EPPIN-WFDC6	chr20	44171506	-
In-frame	ENST00000361658	ENST00000575403		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
In-frame	ENST00000361658	ENST00000477478		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000361658	ENST00000468679		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000361658	ENST00000461069		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000361658	ENST00000395615		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000361658	ENST00000261499		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000361658	ENST00000395616		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000361658	ENST00000268841		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
In-frame	ENST00000395544	ENST00000575403		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
In-frame	ENST00000395544	ENST00000477478		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000395544	ENST00000468679		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000395544	ENST00000461069		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000395544	ENST00000395615		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000395544	ENST00000261499		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000395544	ENST00000395616		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-intron	ENST00000395544	ENST00000268841		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-3CDS	ENST00000580130	ENST00000575403		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-3CDS	ENST00000580130	ENST00000477478		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-intron	ENST00000580130	ENST00000468679		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-intron	ENST00000580130	ENST00000461069		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-intron	ENST00000580130	ENST00000395615		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-intron	ENST00000580130	ENST00000261499		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-intron	ENST00000580130	ENST00000395616		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
intron-intron	ENST00000580130	ENST00000268841		TCGA	LD	PRAD	TCGA-HC-7819-01A	ULK2	chr17	19768116	-	B9D1	chr17	19251193	-
5CDS-5UTR	ENST00000326724	ENST00000318789		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000326724	ENST00000475937		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000326724	ENST00000493089		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000326724	ENST00000484350		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000326724	ENST00000318779		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000326724	ENST00000491238		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000326724	ENST00000498215		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000326724	ENST00000468577		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000326724	ENST00000472382		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000417379	ENST00000318789		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000417379	ENST00000475937		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000417379	ENST00000493089		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000417379	ENST00000484350		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-5UTR	ENST00000417379	ENST00000318779		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000417379	ENST00000491238		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000417379	ENST00000498215		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000417379	ENST00000468577		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
5CDS-intron	ENST00000417379	ENST00000472382		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-5UTR	ENST00000572339	ENST00000318789		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-5UTR	ENST00000572339	ENST00000475937		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-5UTR	ENST00000572339	ENST00000493089		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-5UTR	ENST00000572339	ENST00000484350		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-5UTR	ENST00000572339	ENST00000318779		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-intron	ENST00000572339	ENST00000491238		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-intron	ENST00000572339	ENST00000498215		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-intron	ENST00000572339	ENST00000468577		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
intron-intron	ENST00000572339	ENST00000472382		TCGA	LD	PRAD	TCGA-HC-7821-01A	AATK	chr17	79093180	-	FOXP1	chr3	71349031	-
Frame-shit	ENST00000223642	ENST00000265922		TCGA	LD	PRAD	TCGA-HC-7821-01A	C5	chr9	123794391	-	BRINP1	chr9	121930502	-
5CDS-intron	ENST00000223642	ENST00000373964		TCGA	LD	PRAD	TCGA-HC-7821-01A	C5	chr9	123794391	-	BRINP1	chr9	121930502	-
5CDS-intron	ENST00000223642	ENST00000482797		TCGA	LD	PRAD	TCGA-HC-7821-01A	C5	chr9	123794391	-	BRINP1	chr9	121930502	-
intron-3CDS	ENST00000466280	ENST00000265922		TCGA	LD	PRAD	TCGA-HC-7821-01A	C5	chr9	123794391	-	BRINP1	chr9	121930502	-
intron-intron	ENST00000466280	ENST00000373964		TCGA	LD	PRAD	TCGA-HC-7821-01A	C5	chr9	123794391	-	BRINP1	chr9	121930502	-
intron-intron	ENST00000466280	ENST00000482797		TCGA	LD	PRAD	TCGA-HC-7821-01A	C5	chr9	123794391	-	BRINP1	chr9	121930502	-
5CDS-5UTR	ENST00000439128	ENST00000509108		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000439128	ENST00000306193		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000439128	ENST00000504480		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-5UTR	ENST00000511633	ENST00000509108		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000511633	ENST00000306193		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000511633	ENST00000504480		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-5UTR	ENST00000510533	ENST00000509108		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000510533	ENST00000306193		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000510533	ENST00000504480		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-5UTR	ENST00000507142	ENST00000509108		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000507142	ENST00000306193		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000507142	ENST00000504480		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-5UTR	ENST00000512193	ENST00000509108		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000512193	ENST00000306193		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
5CDS-intron	ENST00000512193	ENST00000504480		TCGA	LD	PRAD	TCGA-HC-7821-01A	NEK1	chr4	170428188	-	CBR4	chr4	169815916	-
Frame-shit	ENST00000424970	ENST00000262187		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000424970	ENST00000472642		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000424970	ENST00000496004		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
In-frame	ENST00000394833	ENST00000262187		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000394833	ENST00000472642		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000394833	ENST00000496004		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
In-frame	ENST00000356736	ENST00000262187		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000356736	ENST00000472642		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000356736	ENST00000496004		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
intron-3CDS	ENST00000510255	ENST00000262187		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
intron-5UTR	ENST00000510255	ENST00000472642		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
intron-5UTR	ENST00000510255	ENST00000496004		TCGA	LD	PRAD	TCGA-HC-7821-01A	SLC39A8	chr4	103265601	-	RHEB	chr7	151174501	-
5CDS-5UTR	ENST00000332149	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000332149	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000332149	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000398585	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000398585	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000398585	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000458356	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000458356	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000458356	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
intron-5UTR	ENST00000497881	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
intron-5UTR	ENST00000497881	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
intron-intron	ENST00000497881	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8213-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
In-frame	ENST00000421412	ENST00000377892		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000421412	ENST00000377890		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000421412	ENST00000377891		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000421412	ENST00000377889		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000421412	ENST00000535296		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000421412	ENST00000338663		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-3UTR	ENST00000421412	ENST00000538682		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-5UTR	ENST00000421412	ENST00000536981		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000295980	ENST00000377892		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000295980	ENST00000377890		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000295980	ENST00000377891		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000295980	ENST00000377889		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000295980	ENST00000535296		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000295980	ENST00000338663		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-3UTR	ENST00000295980	ENST00000538682		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-5UTR	ENST00000295980	ENST00000536981		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000383814	ENST00000377892		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000383814	ENST00000377890		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000383814	ENST00000377891		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000383814	ENST00000377889		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000383814	ENST00000535296		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000383814	ENST00000338663		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-3UTR	ENST00000383814	ENST00000538682		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-5UTR	ENST00000383814	ENST00000536981		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000454190	ENST00000377892		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000454190	ENST00000377890		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000454190	ENST00000377891		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000454190	ENST00000377889		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000454190	ENST00000535296		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
In-frame	ENST00000454190	ENST00000338663		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-3UTR	ENST00000454190	ENST00000538682		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
5CDS-5UTR	ENST00000454190	ENST00000536981		TCGA	LD	PRAD	TCGA-HC-8216-01A	IL17RE	chr3	9950967	+	SLC3A2	chr11	62650380	+
Frame-shit	ENST00000399262	ENST00000395957		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000399262	ENST00000395958		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000399262	ENST00000457309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000399262	ENST00000395956		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000399262	ENST00000353245		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000399262	ENST00000522542		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000399262	ENST00000521309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000399262	ENST00000522819		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000399262	ENST00000395953		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000399262	ENST00000395948		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000399262	ENST00000395951		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000399262	ENST00000419477		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000399262	ENST00000492736		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000402544	ENST00000395957		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000402544	ENST00000395958		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000402544	ENST00000457309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000402544	ENST00000395956		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000402544	ENST00000353245		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000402544	ENST00000522542		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000402544	ENST00000521309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000402544	ENST00000522819		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000402544	ENST00000395953		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000402544	ENST00000395948		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000402544	ENST00000395951		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000402544	ENST00000419477		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000402544	ENST00000492736		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000399251	ENST00000395957		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000399251	ENST00000395958		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000399251	ENST00000457309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000399251	ENST00000395956		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000399251	ENST00000353245		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000399251	ENST00000522542		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000399251	ENST00000521309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000399251	ENST00000522819		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000399251	ENST00000395953		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000399251	ENST00000395948		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000399251	ENST00000395951		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000399251	ENST00000419477		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000399251	ENST00000492736		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000542921	ENST00000395957		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000542921	ENST00000395958		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000542921	ENST00000457309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000542921	ENST00000395956		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000542921	ENST00000353245		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
Frame-shit	ENST00000542921	ENST00000522542		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000542921	ENST00000521309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000542921	ENST00000522819		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000542921	ENST00000395953		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000542921	ENST00000395948		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000542921	ENST00000395951		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000542921	ENST00000419477		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-intron	ENST00000542921	ENST00000492736		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000489372	ENST00000395957		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000489372	ENST00000395958		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000489372	ENST00000457309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000489372	ENST00000395956		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000489372	ENST00000353245		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-3CDS	ENST00000489372	ENST00000522542		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000489372	ENST00000521309		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000489372	ENST00000522819		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000489372	ENST00000395953		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000489372	ENST00000395948		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000489372	ENST00000395951		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-5UTR	ENST00000489372	ENST00000419477		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
intron-intron	ENST00000489372	ENST00000492736		TCGA	LD	PRAD	TCGA-HC-8216-01A	JMJD1C	chr10	64960236	-	YWHAZ	chr8	101937267	-
5CDS-5UTR	ENST00000382172	ENST00000382145		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
5CDS-intron	ENST00000382172	ENST00000556521		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
5CDS-intron	ENST00000382172	ENST00000382137		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
5CDS-intron	ENST00000382172	ENST00000382140		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
5CDS-intron	ENST00000382172	ENST00000382057		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
intron-5UTR	ENST00000469167	ENST00000382145		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
intron-intron	ENST00000469167	ENST00000556521		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
intron-intron	ENST00000469167	ENST00000382137		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
intron-intron	ENST00000469167	ENST00000382140		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
intron-intron	ENST00000469167	ENST00000382057		TCGA	LD	PRAD	TCGA-HC-8216-01A	MIPEP	chr13	24330684	-	C1QTNF9B	chr13	24471365	-
In-frame	ENST00000352241	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
In-frame	ENST00000352241	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
In-frame	ENST00000448226	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
In-frame	ENST00000448226	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000472437	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000472437	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000328528	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000328528	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000314589	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000314589	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000394355	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000394355	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000314557	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000314557	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000394351	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000394351	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000531774	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000531774	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000394348	ENST00000273258		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
intron-3CDS	ENST00000394348	ENST00000478935		TCGA	LD	PRAD	TCGA-HC-8216-01A	MITF	chr3	69788852	+	ARL6IP5	chr3	69150990	+
5CDS-5UTR	ENST00000262435	ENST00000336034		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
5CDS-5UTR	ENST00000262435	ENST00000595337		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
5CDS-intron	ENST00000262435	ENST00000593804		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
5CDS-5UTR	ENST00000262435	ENST00000596251		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
5CDS-5UTR	ENST00000262435	ENST00000598727		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
intron-5UTR	ENST00000578200	ENST00000336034		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
intron-5UTR	ENST00000578200	ENST00000595337		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
intron-intron	ENST00000578200	ENST00000593804		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
intron-5UTR	ENST00000578200	ENST00000596251		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
intron-5UTR	ENST00000578200	ENST00000598727		TCGA	LD	PRAD	TCGA-HC-8216-01A	SMURF2	chr17	62657947	-	DEDD2	chr19	42721197	-
5CDS-intron	ENST00000267814	ENST00000311669		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
5CDS-intron	ENST00000267814	ENST00000456471		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
5CDS-intron	ENST00000267814	ENST00000567733		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
intron-intron	ENST00000558580	ENST00000311669		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
intron-intron	ENST00000558580	ENST00000456471		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
intron-intron	ENST00000558580	ENST00000567733		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
intron-intron	ENST00000559562	ENST00000311669		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
intron-intron	ENST00000559562	ENST00000456471		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
intron-intron	ENST00000559562	ENST00000567733		TCGA	LD	PRAD	TCGA-HC-8216-01A	SORD	chr15	45315547	+	ADPGK	chr15	73078187	-
5CDS-5UTR	ENST00000332149	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000332149	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000332149	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000398585	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000398585	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000398585	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000458356	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-5UTR	ENST00000458356	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
5CDS-intron	ENST00000458356	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
intron-5UTR	ENST00000497881	ENST00000227525		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
intron-5UTR	ENST00000497881	ENST00000536171		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
intron-intron	ENST00000497881	ENST00000540280		TCGA	LD	PRAD	TCGA-HC-8216-01A	TMPRSS2	chr21	42860321	-	TMEM109	chr11	60687158	+
In-frame	ENST00000357156	ENST00000373973		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000357156	ENST00000349339		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000357156	ENST00000538900		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
3UTR-3CDS	ENST00000480759	ENST00000373973		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
3UTR-3CDS	ENST00000480759	ENST00000349339		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
3UTR-3CDS	ENST00000480759	ENST00000538900		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000417166	ENST00000373973		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000417166	ENST00000349339		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000417166	ENST00000538900		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000300469	ENST00000373973		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000300469	ENST00000349339		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000300469	ENST00000538900		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000374846	ENST00000373973		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000374846	ENST00000349339		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
In-frame	ENST00000374846	ENST00000538900		TCGA	LD	PRAD	TCGA-HC-8257-01A	DYNLRB1	chr20	33114148	+	CNBD2	chr20	34596219	+
intron-3CDS	ENST00000499810	ENST00000399438		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000499810	ENST00000438419		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000499810	ENST00000231526		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000499810	ENST00000505553		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000499810	ENST00000545191		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
Frame-shit	ENST00000360541	ENST00000399438		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
Frame-shit	ENST00000360541	ENST00000438419		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
Frame-shit	ENST00000360541	ENST00000231526		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
Frame-shit	ENST00000360541	ENST00000505553		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
Frame-shit	ENST00000360541	ENST00000545191		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000503014	ENST00000399438		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000503014	ENST00000438419		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000503014	ENST00000231526		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000503014	ENST00000505553		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000503014	ENST00000545191		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000514005	ENST00000399438		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000514005	ENST00000438419		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000514005	ENST00000231526		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000514005	ENST00000505553		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
intron-3CDS	ENST00000514005	ENST00000545191		TCGA	LD	PRAD	TCGA-HC-8259-01A	ETF1	chr5	137878522	-	TRAPPC13	chr5	64954195	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8259-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-3UTR	ENST00000305135	ENST00000438796		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
5CDS-3UTR	ENST00000305135	ENST00000414675		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
5CDS-3UTR	ENST00000305135	ENST00000441090		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
5CDS-intron	ENST00000305135	ENST00000334859		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
5CDS-intron	ENST00000305135	ENST00000425562		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
5CDS-intron	ENST00000305135	ENST00000493726		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
5CDS-intron	ENST00000305135	ENST00000536618		TCGA	LD	PRAD	TCGA-HC-8259-01A	YEATS2	chr3	183480067	+	LRCH3	chr3	197610412	+
In-frame	ENST00000278616	ENST00000322536		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
In-frame	ENST00000278616	ENST00000526794		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
5CDS-intron	ENST00000278616	ENST00000534221		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
In-frame	ENST00000452508	ENST00000322536		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
In-frame	ENST00000452508	ENST00000526794		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
5CDS-intron	ENST00000452508	ENST00000534221		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
3UTR-3CDS	ENST00000525178	ENST00000322536		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
3UTR-3CDS	ENST00000525178	ENST00000526794		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
3UTR-intron	ENST00000525178	ENST00000534221		TCGA	LD	PRAD	TCGA-HC-8260-01A	ATM	chr11	108225601	+	DDX10	chr11	108709173	+
5CDS-5UTR	ENST00000222690	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000222690	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000222690	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000222690	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000437072	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000437072	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000437072	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000437072	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000349299	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000349299	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000349299	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000349299	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000308153	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000308153	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000308153	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000308153	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000350771	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000350771	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000350771	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000350771	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000381124	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000381124	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000381124	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000381124	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000521529	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000521529	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000521529	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000521529	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000446531	ENST00000291535		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000446531	ENST00000450356		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000446531	ENST00000319294		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5CDS-5UTR	ENST00000446531	ENST00000398367		TCGA	LD	PRAD	TCGA-HC-8260-01A	H2AFV	chr7	44887568	-	UBASH3A	chr21	43824025	+
5UTR-5UTR	ENST00000460934	ENST00000512055		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5UTR-intron	ENST00000460934	ENST00000429747		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5UTR-intron	ENST00000460934	ENST00000512332		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5UTR-intron	ENST00000460934	ENST00000511604		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5UTR-intron	ENST00000460934	ENST00000502818		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5UTR-intron	ENST00000460934	ENST00000503204		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000367145	ENST00000512055		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000367145	ENST00000429747		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000367145	ENST00000512332		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000367145	ENST00000511604		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000367145	ENST00000502818		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000367145	ENST00000503204		TCGA	LD	PRAD	TCGA-HC-8260-01A	SLC45A3	chr1	205630989	-	CPNE4	chr3	131759165	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-8260-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000380599	ENST00000200652		TCGA	LD	PRAD	TCGA-HC-8260-01A	ZBTB4	chr17	7365738	-	SLC22A4	chr5	131670411	+
intron-intron	ENST00000380599	ENST00000491257		TCGA	LD	PRAD	TCGA-HC-8260-01A	ZBTB4	chr17	7365738	-	SLC22A4	chr5	131670411	+
intron-3CDS	ENST00000311403	ENST00000200652		TCGA	LD	PRAD	TCGA-HC-8260-01A	ZBTB4	chr17	7365738	-	SLC22A4	chr5	131670411	+
intron-intron	ENST00000311403	ENST00000491257		TCGA	LD	PRAD	TCGA-HC-8260-01A	ZBTB4	chr17	7365738	-	SLC22A4	chr5	131670411	+
5CDS-5UTR	ENST00000278612	ENST00000531293		TCGA	LD	PRAD	TCGA-HC-8261-01A	NPAT	chr11	108093227	-	SLN	chr11	107582888	-
5CDS-intron	ENST00000278612	ENST00000305991		TCGA	LD	PRAD	TCGA-HC-8261-01A	NPAT	chr11	108093227	-	SLN	chr11	107582888	-
5CDS-intron	ENST00000278612	ENST00000525934		TCGA	LD	PRAD	TCGA-HC-8261-01A	NPAT	chr11	108093227	-	SLN	chr11	107582888	-
5UTR-5UTR	ENST00000610253	ENST00000531293		TCGA	LD	PRAD	TCGA-HC-8261-01A	NPAT	chr11	108093227	-	SLN	chr11	107582888	-
5UTR-intron	ENST00000610253	ENST00000305991		TCGA	LD	PRAD	TCGA-HC-8261-01A	NPAT	chr11	108093227	-	SLN	chr11	107582888	-
5UTR-intron	ENST00000610253	ENST00000525934		TCGA	LD	PRAD	TCGA-HC-8261-01A	NPAT	chr11	108093227	-	SLN	chr11	107582888	-
5CDS-intron	ENST00000295688	ENST00000437809		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000295688	ENST00000368331		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000295688	ENST00000271883		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000295688	ENST00000361040		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000295688	ENST00000471341		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368259	ENST00000437809		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368259	ENST00000368331		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368259	ENST00000271883		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368259	ENST00000361040		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368259	ENST00000471341		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368261	ENST00000437809		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368261	ENST00000368331		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368261	ENST00000271883		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368261	ENST00000361040		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000368261	ENST00000471341		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000472765	ENST00000437809		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000472765	ENST00000368331		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000472765	ENST00000271883		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000472765	ENST00000361040		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5CDS-intron	ENST00000472765	ENST00000471341		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5UTR-intron	ENST00000368256	ENST00000437809		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5UTR-intron	ENST00000368256	ENST00000368331		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5UTR-intron	ENST00000368256	ENST00000271883		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5UTR-intron	ENST00000368256	ENST00000361040		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5UTR-intron	ENST00000368256	ENST00000471341		TCGA	LD	PRAD	TCGA-HC-8262-01A	CCT3	chr1	156303338	-	GON4L	chr1	155802741	-
5UTR-5UTR	ENST00000427410	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000427410	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000427410	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000427410	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000427410	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000427410	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000447388	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000447388	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000447388	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000447388	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000447388	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000447388	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000425457	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000425457	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000425457	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000425457	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000425457	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000425457	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000456393	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000456393	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000456393	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000456393	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000456393	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000456393	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000372654	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000372654	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-5UTR	ENST00000372654	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000372654	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000372654	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
5UTR-intron	ENST00000372654	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372653	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372653	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372653	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372653	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372653	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372653	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372652	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372652	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372652	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372652	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372652	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372652	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372651	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372651	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000372651	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372651	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372651	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000372651	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000440226	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000440226	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000440226	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000440226	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000440226	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000440226	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000308733	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000308733	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000308733	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000308733	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000308733	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000308733	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000483091	ENST00000264485		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000483091	ENST00000425175		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-5UTR	ENST00000483091	ENST00000351898		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000483091	ENST00000340595		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000483091	ENST00000514331		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
intron-intron	ENST00000483091	ENST00000512686		TCGA	LD	PRAD	TCGA-HC-8262-01A	NFYC	chr1	41157539	+	SLC4A4	chr4	72102293	+
Frame-shit	ENST00000369409	ENST00000357731		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
Frame-shit	ENST00000369409	ENST00000306821		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
Frame-shit	ENST00000369409	ENST00000434200		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
5CDS-5UTR	ENST00000369409	ENST00000467479		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
Frame-shit	ENST00000369407	ENST00000357731		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
Frame-shit	ENST00000369407	ENST00000306821		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
Frame-shit	ENST00000369407	ENST00000434200		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
5CDS-5UTR	ENST00000369407	ENST00000467479		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
intron-3CDS	ENST00000482968	ENST00000357731		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
intron-3CDS	ENST00000482968	ENST00000306821		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
intron-3CDS	ENST00000482968	ENST00000434200		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
intron-5UTR	ENST00000482968	ENST00000467479		TCGA	LD	PRAD	TCGA-HC-8262-01A	PHGDH	chr1	120279889	+	NEGR1	chr1	72241980	-
5CDS-intron	ENST00000282406	ENST00000404666		TCGA	LD	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17748647	+
5CDS-intron	ENST00000282406	ENST00000295156		TCGA	LD	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17748647	+
5CDS-intron	ENST00000282406	ENST00000406397		TCGA	LD	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17748647	+
5CDS-3UTR	ENST00000282406	ENST00000483921		TCGA	LD	PRAD	TCGA-HC-8262-01A	PLEKHH2	chr2	43871935	+	VSNL1	chr2	17748647	+
5UTR-3UTR	ENST00000265277	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-8262-01A	SHOC2	chr10	112679415	+	TMEM178A	chr2	39931221	+
5UTR-3UTR	ENST00000265277	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-8262-01A	SHOC2	chr10	112679415	+	TMEM178A	chr2	39931221	+
5UTR-3UTR	ENST00000369452	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-8262-01A	SHOC2	chr10	112679415	+	TMEM178A	chr2	39931221	+
5UTR-3UTR	ENST00000369452	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-8262-01A	SHOC2	chr10	112679415	+	TMEM178A	chr2	39931221	+
3UTR-3UTR	ENST00000489390	ENST00000482239		TCGA	LD	PRAD	TCGA-HC-8262-01A	SHOC2	chr10	112679415	+	TMEM178A	chr2	39931221	+
3UTR-3UTR	ENST00000489390	ENST00000281961		TCGA	LD	PRAD	TCGA-HC-8262-01A	SHOC2	chr10	112679415	+	TMEM178A	chr2	39931221	+
intron-3CDS	ENST00000548898	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000548898	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000548898	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000552067	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000552067	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000552067	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000420846	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000420846	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000420846	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000548160	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000548160	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000548160	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000546939	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000546939	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000546939	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000552692	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000552692	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000552692	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000549117	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000549117	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000549117	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000257857	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000257857	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000257857	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000552754	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000552754	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000552754	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000550776	ENST00000340811		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-3CDS	ENST00000550776	ENST00000070846		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
intron-intron	ENST00000550776	ENST00000546741		TCGA	LD	PRAD	TCGA-HC-8264-01B	CD63	chr12	56119354	-	PKP2	chr12	32955490	-
Frame-shit	ENST00000340811	ENST00000444631		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
Frame-shit	ENST00000340811	ENST00000336133		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
Frame-shit	ENST00000340811	ENST00000552080		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
Frame-shit	ENST00000070846	ENST00000444631		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
Frame-shit	ENST00000070846	ENST00000336133		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
Frame-shit	ENST00000070846	ENST00000552080		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
intron-3CDS	ENST00000546741	ENST00000444631		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
intron-3CDS	ENST00000546741	ENST00000336133		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
intron-3CDS	ENST00000546741	ENST00000552080		TCGA	LD	PRAD	TCGA-HC-8264-01B	PKP2	chr12	32955337	-	SARNP	chr12	56154424	-
5CDS-5UTR	ENST00000354725	ENST00000308868		TCGA	LD	PRAD	TCGA-HC-8264-01B	SND1	chr7	127347701	+	LEP	chr7	127892044	+
intron-5UTR	ENST00000467238	ENST00000308868		TCGA	LD	PRAD	TCGA-HC-8264-01B	SND1	chr7	127347701	+	LEP	chr7	127892044	+
Frame-shit	ENST00000334258	ENST00000238558		TCGA	LD	PRAD	TCGA-HC-8264-01B	SYNE3	chr14	95942015	-	GSC	chr14	95235554	-
intron-3CDS	ENST00000554873	ENST00000238558		TCGA	LD	PRAD	TCGA-HC-8264-01B	SYNE3	chr14	95942015	-	GSC	chr14	95235554	-
Frame-shit	ENST00000557275	ENST00000238558		TCGA	LD	PRAD	TCGA-HC-8264-01B	SYNE3	chr14	95942015	-	GSC	chr14	95235554	-
Frame-shit	ENST00000553340	ENST00000238558		TCGA	LD	PRAD	TCGA-HC-8264-01B	SYNE3	chr14	95942015	-	GSC	chr14	95235554	-
5CDS-5UTR	ENST00000400274	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000400274	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000400274	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000400274	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000400274	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000400274	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000427143	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000427143	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000427143	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000427143	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000427143	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000427143	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000318711	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000318711	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000318711	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000318711	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000318711	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000318711	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000417564	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000417564	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000417564	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000417564	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000417564	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000417564	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000457905	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000457905	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000457905	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000457905	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000457905	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000457905	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000466639	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000466639	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000466639	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000466639	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000466639	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000466639	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000435722	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000435722	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000435722	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000435722	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-5UTR	ENST00000435722	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000435722	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
intron-5UTR	ENST00000479654	ENST00000300527		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
intron-5UTR	ENST00000479654	ENST00000310645		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
intron-5UTR	ENST00000479654	ENST00000357838		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
intron-5UTR	ENST00000479654	ENST00000409416		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
intron-5UTR	ENST00000479654	ENST00000397763		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
intron-intron	ENST00000479654	ENST00000460886		TCGA	LD	PRAD	TCGA-HC-8265-01A	DIP2A	chr21	47961808	+	COL6A2	chr21	47531364	+
5CDS-intron	ENST00000357992	ENST00000340781		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000357992	ENST00000367135		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000357992	ENST00000367134		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-intron	ENST00000289703	ENST00000340781		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000289703	ENST00000367135		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-5UTR	ENST00000289703	ENST00000367134		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-intron	ENST00000468523	ENST00000340781		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-5UTR	ENST00000468523	ENST00000367135		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5UTR-5UTR	ENST00000468523	ENST00000367134		TCGA	LD	PRAD	TCGA-HC-8265-01A	ELK4	chr1	205592804	-	SLC26A9	chr1	205904966	-
5CDS-intron	ENST00000333743	ENST00000549804		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000547292		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000424208		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-3UTR	ENST00000333743	ENST00000452731		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000554726		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000551631		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000459433		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000551361		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000553134		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000551938		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000384733		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000551077		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000546682		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000553108		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000384430		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000516123		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000553149		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000441592		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000365306		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000414175		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000456576		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000363358		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000424333		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000450809		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000453082		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000365067		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000390982		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000333743	ENST00000580438		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000549804		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000547292		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000424208		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-3UTR	ENST00000555083	ENST00000452731		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000554726		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000551631		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000459433		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000551361		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000553134		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000551938		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000384733		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000551077		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000546682		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000553108		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000384430		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000516123		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000553149		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000441592		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000365306		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000414175		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000456576		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000363358		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000424333		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000450809		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000453082		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000365067		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000390982		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5CDS-intron	ENST00000555083	ENST00000580438		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000549804		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000547292		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000424208		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-3UTR	ENST00000554786	ENST00000452731		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000554726		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000551631		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000459433		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000551361		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000553134		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000551938		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000384733		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000551077		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000546682		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000553108		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000384430		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000516123		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000553149		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000441592		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000365306		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000414175		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000456576		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000363358		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000424333		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000450809		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000453082		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000365067		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000390982		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
intron-intron	ENST00000554786	ENST00000580438		TCGA	LD	PRAD	TCGA-HC-8265-01A	GABRG3	chr15	27271968	+	SNHG14	chr15	25583158	+
5UTR-3CDS	ENST00000374864	ENST00000376309		TCGA	LD	PRAD	TCGA-HC-8265-01A	ITCH	chr20	32957276	+	DEFB123	chr20	30037832	+
5UTR-3CDS	ENST00000535650	ENST00000376309		TCGA	LD	PRAD	TCGA-HC-8265-01A	ITCH	chr20	32957276	+	DEFB123	chr20	30037832	+
5UTR-3CDS	ENST00000262650	ENST00000376309		TCGA	LD	PRAD	TCGA-HC-8265-01A	ITCH	chr20	32957276	+	DEFB123	chr20	30037832	+
intron-3CDS	ENST00000483727	ENST00000376309		TCGA	LD	PRAD	TCGA-HC-8265-01A	ITCH	chr20	32957276	+	DEFB123	chr20	30037832	+
In-frame	ENST00000295628	ENST00000295633		TCGA	LD	PRAD	TCGA-HC-8265-01A	LRRC58	chr3	120067591	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000295628	ENST00000424703		TCGA	LD	PRAD	TCGA-HC-8265-01A	LRRC58	chr3	120067591	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000295628	ENST00000485968		TCGA	LD	PRAD	TCGA-HC-8265-01A	LRRC58	chr3	120067591	-	FSTL1	chr3	120134874	-
Frame-shit	ENST00000380393	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000380393	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000380393	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000380393	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000380393	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000380393	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000216877	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000216877	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000216877	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000216877	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000216877	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000216877	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000358719	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000358719	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000358719	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000358719	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000358719	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000358719	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000399903	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000399903	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000399903	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000399903	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000399903	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000399903	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000425918	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000425918	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000425918	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000425918	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000425918	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000425918	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000318266	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000318266	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000318266	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000318266	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000318266	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000318266	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000356147	ENST00000381898		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000356147	ENST00000333082		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000356147	ENST00000246015		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000356147	ENST00000335877		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-intron	ENST00000356147	ENST00000438768		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
5CDS-3UTR	ENST00000356147	ENST00000484891		TCGA	LD	PRAD	TCGA-HC-8265-01A	PTPRA	chr20	2969120	+	PSMF1	chr20	1115764	+
Frame-shit	ENST00000254480	ENST00000434006		TCGA	LD	PRAD	TCGA-HC-8265-01A	SMARCC1	chr3	47777524	-	SPINK8	chr3	48351436	-
5UTR-3CDS	ENST00000425518	ENST00000434006		TCGA	LD	PRAD	TCGA-HC-8265-01A	SMARCC1	chr3	47777524	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000512215	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000512215	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000512215	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000512215	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
5CDS-3UTR	ENST00000512215	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394854	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394854	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394854	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394854	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
5CDS-3UTR	ENST00000394854	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000323055	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000323055	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000323055	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000323055	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
5CDS-3UTR	ENST00000323055	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394853	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394853	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394853	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
Frame-shit	ENST00000394853	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
5CDS-3UTR	ENST00000394853	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000507176	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000507176	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000507176	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000507176	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3UTR	ENST00000507176	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000523694	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000523694	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000523694	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000523694	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3UTR	ENST00000523694	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000510292	ENST00000354489		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000510292	ENST00000313243		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000510292	ENST00000474039		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000510292	ENST00000538030		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3UTR	ENST00000510292	ENST00000536370		TCGA	LD	PRAD	TCGA-HC-8266-01A	PPP3CA	chr4	102117073	-	MAK	chr6	10796542	-
intron-3CDS	ENST00000406437	ENST00000238823		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000406437	ENST00000403368		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000406437	ENST00000441530		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000406437	ENST00000498340		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000494539	ENST00000238823		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000494539	ENST00000403368		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000494539	ENST00000441530		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000494539	ENST00000498340		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000407122	ENST00000238823		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000407122	ENST00000403368		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000407122	ENST00000441530		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000407122	ENST00000498340		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
5UTR-3CDS	ENST00000401408	ENST00000238823		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
5UTR-3CDS	ENST00000401408	ENST00000403368		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
5UTR-5UTR	ENST00000401408	ENST00000441530		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
5UTR-5UTR	ENST00000401408	ENST00000498340		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000406076	ENST00000238823		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-3CDS	ENST00000406076	ENST00000403368		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000406076	ENST00000441530		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
intron-5UTR	ENST00000406076	ENST00000498340		TCGA	LD	PRAD	TCGA-HC-A48F-01A	CLHC1	chr2	55455168	-	FAM98A	chr2	33812387	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3UTR	ENST00000413465	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000413465	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000359597	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000359597	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000269305	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000269305	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000455263	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000455263	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000420246	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000420246	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000445888	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000445888	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000574684	ENST00000225296		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
intron-3UTR	ENST00000574684	ENST00000433302		TCGA	LD	PRAD	TCGA-HC-A48F-01A	TP53	chr17	7578439	-	DHX33	chr17	5347154	-
5CDS-3UTR	ENST00000301281	ENST00000511250		TCGA	LD	PRAD	TCGA-HC-A48F-01A	UBXN6	chr19	4452361	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000301281	ENST00000308497		TCGA	LD	PRAD	TCGA-HC-A48F-01A	UBXN6	chr19	4452361	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000301281	ENST00000438269		TCGA	LD	PRAD	TCGA-HC-A48F-01A	UBXN6	chr19	4452361	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000394765	ENST00000511250		TCGA	LD	PRAD	TCGA-HC-A48F-01A	UBXN6	chr19	4452361	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000394765	ENST00000308497		TCGA	LD	PRAD	TCGA-HC-A48F-01A	UBXN6	chr19	4452361	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000394765	ENST00000438269		TCGA	LD	PRAD	TCGA-HC-A48F-01A	UBXN6	chr19	4452361	-	STOX2	chr4	184922478	+
Frame-shit	ENST00000393533	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000393533	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000393533	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000393533	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000393533	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000372814	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372814	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372814	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372814	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000372814	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000351030	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000351030	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000351030	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000351030	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000351030	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000604420	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000604420	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000604420	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000604420	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000604420	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
3UTR-3CDS	ENST00000535026	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
3UTR-intron	ENST00000535026	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
3UTR-intron	ENST00000535026	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
3UTR-intron	ENST00000535026	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
3UTR-3UTR	ENST00000535026	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000448249	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000448249	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000448249	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000448249	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000448249	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000393527	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000393527	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000393527	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000393527	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000393527	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000434106	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000434106	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000434106	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000434106	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000434106	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000546203	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000546203	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000546203	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000546203	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000546203	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000372791	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372791	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372791	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372791	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000372791	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000372807	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372807	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372807	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000372807	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000372807	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
Frame-shit	ENST00000444119	ENST00000300452		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000444119	ENST00000609948		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000444119	ENST00000608951		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-intron	ENST00000444119	ENST00000372875		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5CDS-3UTR	ENST00000444119	ENST00000461102		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ODF2	chr9	131245166	+	COQ4	chr9	131095129	+
5UTR-3CDS	ENST00000359680	ENST00000454189		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000359680	ENST00000398361		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000359680	ENST00000316715		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000359680	ENST00000493677		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000359680	ENST00000355135		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000359680	ENST00000356942		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000453655	ENST00000454189		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000453655	ENST00000398361		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000453655	ENST00000316715		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000453655	ENST00000493677		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000453655	ENST00000355135		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000453655	ENST00000356942		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000380579	ENST00000454189		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000380579	ENST00000398361		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000380579	ENST00000316715		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000380579	ENST00000493677		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000380579	ENST00000355135		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000380579	ENST00000356942		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000358231	ENST00000454189		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000358231	ENST00000398361		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000358231	ENST00000316715		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000358231	ENST00000493677		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000358231	ENST00000355135		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000358231	ENST00000356942		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000458511	ENST00000454189		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000458511	ENST00000398361		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000458511	ENST00000316715		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000458511	ENST00000493677		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000458511	ENST00000355135		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000458511	ENST00000356942		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-3CDS	ENST00000519885	ENST00000454189		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000519885	ENST00000398361		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000519885	ENST00000316715		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000519885	ENST00000493677		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000519885	ENST00000355135		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
5UTR-5UTR	ENST00000519885	ENST00000356942		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	TRAPPC2	chrX	13752644	-	GPM6B	chrX	13803927	-
intron-intron	ENST00000268489	ENST00000537792		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000268489	ENST00000537465		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000268489	ENST00000237353		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000268489	ENST00000355636		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000268489	ENST00000543746		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
5UTR-intron	ENST00000397992	ENST00000537792		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
5UTR-intron	ENST00000397992	ENST00000537465		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
5UTR-intron	ENST00000397992	ENST00000237353		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
5UTR-intron	ENST00000397992	ENST00000355636		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
5UTR-intron	ENST00000397992	ENST00000543746		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000537792		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000537465		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000237353		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000355636		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
intron-intron	ENST00000558842	ENST00000543746		TCGA	LD	PRAD	TCGA-HC-A4ZV-01A	ZFHX3	chr16	73092429	-	PMFBP1	chr16	72153988	-
Frame-shit	ENST00000348956	ENST00000361740		TCGA	LD	PRAD	TCGA-HC-A631-01A	CKB	chr14	103988638	-	CYB5R3	chr22	43026994	-
Frame-shit	ENST00000348956	ENST00000396303		TCGA	LD	PRAD	TCGA-HC-A631-01A	CKB	chr14	103988638	-	CYB5R3	chr22	43026994	-
Frame-shit	ENST00000348956	ENST00000352397		TCGA	LD	PRAD	TCGA-HC-A631-01A	CKB	chr14	103988638	-	CYB5R3	chr22	43026994	-
Frame-shit	ENST00000348956	ENST00000407623		TCGA	LD	PRAD	TCGA-HC-A631-01A	CKB	chr14	103988638	-	CYB5R3	chr22	43026994	-
Frame-shit	ENST00000348956	ENST00000407332		TCGA	LD	PRAD	TCGA-HC-A631-01A	CKB	chr14	103988638	-	CYB5R3	chr22	43026994	-
Frame-shit	ENST00000348956	ENST00000402438		TCGA	LD	PRAD	TCGA-HC-A631-01A	CKB	chr14	103988638	-	CYB5R3	chr22	43026994	-
Frame-shit	ENST00000412050	ENST00000338193		TCGA	LD	PRAD	TCGA-HC-A631-01A	CPEB3	chr10	93841077	-	PRIM1	chr12	57140816	-
5CDS-5UTR	ENST00000412050	ENST00000552408		TCGA	LD	PRAD	TCGA-HC-A631-01A	CPEB3	chr10	93841077	-	PRIM1	chr12	57140816	-
Frame-shit	ENST00000265997	ENST00000338193		TCGA	LD	PRAD	TCGA-HC-A631-01A	CPEB3	chr10	93841077	-	PRIM1	chr12	57140816	-
5CDS-5UTR	ENST00000265997	ENST00000552408		TCGA	LD	PRAD	TCGA-HC-A631-01A	CPEB3	chr10	93841077	-	PRIM1	chr12	57140816	-
intron-3CDS	ENST00000402414	ENST00000391976		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000402414	ENST00000310931		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000402414	ENST00000391975		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000402414	ENST00000427183		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-intron	ENST00000402414	ENST00000476807		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000333610	ENST00000391976		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000333610	ENST00000310931		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000333610	ENST00000391975		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-3CDS	ENST00000333610	ENST00000427183		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
intron-intron	ENST00000333610	ENST00000476807		TCGA	LD	PRAD	TCGA-HC-A631-01A	TTC32	chr2	20101237	-	HDLBP	chr2	242170359	-
5CDS-3UTR	ENST00000372715	ENST00000412654		TCGA	LD	PRAD	TCGA-HC-A631-01A	WDR34	chr9	131402970	-	PCA3	chr9	79399199	+
intron-3UTR	ENST00000483181	ENST00000412654		TCGA	LD	PRAD	TCGA-HC-A631-01A	WDR34	chr9	131402970	-	PCA3	chr9	79399199	+
3UTR-3CDS	ENST00000463441	ENST00000257915		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
3UTR-3CDS	ENST00000463441	ENST00000307660		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
3UTR-3CDS	ENST00000463441	ENST00000549867		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
3UTR-3CDS	ENST00000463441	ENST00000548115		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
intron-3CDS	ENST00000323078	ENST00000257915		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
intron-3CDS	ENST00000323078	ENST00000307660		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
intron-3CDS	ENST00000323078	ENST00000549867		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
intron-3CDS	ENST00000323078	ENST00000548115		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000359623	ENST00000257915		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000359623	ENST00000307660		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000359623	ENST00000549867		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000359623	ENST00000548115		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000493307	ENST00000257915		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000493307	ENST00000307660		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000493307	ENST00000549867		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
5UTR-3CDS	ENST00000493307	ENST00000548115		TCGA	LD	PRAD	TCGA-HC-A632-01A	LRRC61	chr7	150023099	+	TFCP2	chr12	51512555	-
In-frame	ENST00000549578	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
In-frame	ENST00000360579	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
intron-3CDS	ENST00000552130	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
5UTR-3CDS	ENST00000447578	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
5UTR-3CDS	ENST00000546588	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
5UTR-3CDS	ENST00000549970	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
5UTR-3CDS	ENST00000551655	ENST00000299134		TCGA	LD	PRAD	TCGA-HC-A632-01A	VPS29	chr12	110939854	-	SVOP	chr12	109306517	-
In-frame	ENST00000504592	ENST00000342526		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000504592	ENST00000498264		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
In-frame	ENST00000322953	ENST00000342526		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000322953	ENST00000498264		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
In-frame	ENST00000428908	ENST00000342526		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000428908	ENST00000498264		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
In-frame	ENST00000508653	ENST00000342526		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000508653	ENST00000498264		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
In-frame	ENST00000444316	ENST00000342526		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000444316	ENST00000498264		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
intron-3CDS	ENST00000510950	ENST00000342526		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
intron-intron	ENST00000510950	ENST00000498264		TCGA	LD	PRAD	TCGA-HC-A6AL-01A	BANK1	chr4	102965064	+	AGMO	chr7	15240984	-
5CDS-intron	ENST00000371269	ENST00000288985		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000371269	ENST00000466840		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000371269	ENST00000437817		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000371269	ENST00000407474		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5UTR-intron	ENST00000537443	ENST00000288985		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5UTR-intron	ENST00000537443	ENST00000466840		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5UTR-intron	ENST00000537443	ENST00000437817		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5UTR-intron	ENST00000537443	ENST00000407474		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000535035	ENST00000288985		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000535035	ENST00000466840		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000535035	ENST00000437817		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
5CDS-intron	ENST00000535035	ENST00000407474		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	DHCR24	chr1	55341615	-	ERCC6L2	chr9	98732858	+
intron-3CDS	ENST00000288985	ENST00000287996		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000288985	ENST00000486841		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000288985	ENST00000375522		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-3CDS	ENST00000466840	ENST00000287996		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000466840	ENST00000486841		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000466840	ENST00000375522		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-3CDS	ENST00000437817	ENST00000287996		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000437817	ENST00000486841		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000437817	ENST00000375522		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-3CDS	ENST00000407474	ENST00000287996		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000407474	ENST00000486841		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
intron-intron	ENST00000407474	ENST00000375522		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	ERCC6L2	chr9	98732938	+	IPPK	chr9	95397590	-
5UTR-3CDS	ENST00000407073	ENST00000357716		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
5UTR-3CDS	ENST00000407073	ENST00000486284		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
5UTR-3CDS	ENST00000407073	ENST00000389336		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
5UTR-3CDS	ENST00000407073	ENST00000402647		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
5UTR-3CDS	ENST00000407073	ENST00000403881		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
5UTR-intron	ENST00000407073	ENST00000458641		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000478804	ENST00000357716		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000478804	ENST00000486284		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000478804	ENST00000389336		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000478804	ENST00000402647		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000478804	ENST00000403881		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-intron	ENST00000478804	ENST00000458641		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000404807	ENST00000357716		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000404807	ENST00000486284		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000404807	ENST00000389336		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000404807	ENST00000402647		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-3CDS	ENST00000404807	ENST00000403881		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
intron-intron	ENST00000404807	ENST00000458641		TCGA	LD	PRAD	TCGA-HC-A6AN-01A	MBD5	chr2	148779253	+	GRM7	chr3	7188139	+
Frame-shit	ENST00000348405	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000348405	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000348405	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000348405	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000348405	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000513858	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000513858	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000513858	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000513858	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000513858	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000395310	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000395310	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000395310	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000395310	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000395310	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000443462	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000443462	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000443462	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000443462	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000443462	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000509142	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000509142	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000509142	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000509142	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000509142	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000326950	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000326950	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000326950	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000326950	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000326950	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000432794	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000432794	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000432794	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000432794	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000432794	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000311785	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000311785	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000311785	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000311785	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000311785	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000448323	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000448323	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000448323	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000448323	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000448323	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000505472	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000505472	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000505472	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000505472	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000505472	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000500777	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000500777	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000500777	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000500777	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000500777	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000508502	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000508502	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000508502	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000508502	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000508502	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000355196	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000355196	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000355196	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000355196	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000355196	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
intron-3CDS	ENST00000264405	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
intron-3CDS	ENST00000264405	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
intron-3CDS	ENST00000264405	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
intron-5UTR	ENST00000264405	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
intron-intron	ENST00000264405	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000505984	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000505984	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000505984	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000505984	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000505984	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000508479	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000508479	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
Frame-shit	ENST00000508479	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-5UTR	ENST00000508479	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5CDS-intron	ENST00000508479	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5UTR-3CDS	ENST00000436790	ENST00000507656		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5UTR-3CDS	ENST00000436790	ENST00000451299		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5UTR-3CDS	ENST00000436790	ENST00000309439		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5UTR-5UTR	ENST00000436790	ENST00000510270		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
5UTR-intron	ENST00000436790	ENST00000512680		TCGA	LD	PRAD	TCGA-HC-A6AP-01A	SEC31A	chr4	83799883	-	ANAPC10	chr4	145916755	-
In-frame	ENST00000371621	ENST00000358791		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
In-frame	ENST00000371621	ENST00000262591		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
In-frame	ENST00000371621	ENST00000371608		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
In-frame	ENST00000371621	ENST00000609336		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
5CDS-3UTR	ENST00000371621	ENST00000485049		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
5UTR-3CDS	ENST00000541713	ENST00000358791		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
5UTR-3CDS	ENST00000541713	ENST00000262591		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
5UTR-3CDS	ENST00000541713	ENST00000371608		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
5UTR-3CDS	ENST00000541713	ENST00000609336		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
5UTR-3UTR	ENST00000541713	ENST00000485049		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	PTPN1	chr20	49127127	+	BCAS4	chr20	49434748	+
Frame-shit	ENST00000003302	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000003302	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000003302	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
5CDS-intron	ENST00000003302	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000260188	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000260188	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000260188	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
5CDS-intron	ENST00000260188	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000544967	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000544967	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000544967	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
5CDS-intron	ENST00000544967	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000545540	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000545540	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000545540	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
5CDS-intron	ENST00000545540	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-3CDS	ENST00000537706	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-3CDS	ENST00000537706	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-3CDS	ENST00000537706	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-intron	ENST00000537706	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-3CDS	ENST00000542033	ENST00000332149		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-3CDS	ENST00000542033	ENST00000398585		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-3CDS	ENST00000542033	ENST00000458356		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
intron-intron	ENST00000542033	ENST00000497881		TCGA	LD	PRAD	TCGA-HC-A6HY-01A	USP28	chr11	113675395	-	TMPRSS2	chr21	42840465	-
Frame-shit	ENST00000305476	ENST00000233809		TCGA	LD	PRAD	TCGA-HC-A76W-01A	SEMA4C	chr2	97529663	-	IGFBP2	chr2	217525280	+
Frame-shit	ENST00000305476	ENST00000456764		TCGA	LD	PRAD	TCGA-HC-A76W-01A	SEMA4C	chr2	97529663	-	IGFBP2	chr2	217525280	+
In-frame	ENST00000233838	ENST00000409785		TCGA	LD	PRAD	TCGA-HC-A76X-01A	GGCX	chr2	85787938	-	KCMF1	chr2	85255012	+
intron-3CDS	ENST00000430215	ENST00000409785		TCGA	LD	PRAD	TCGA-HC-A76X-01A	GGCX	chr2	85787938	-	KCMF1	chr2	85255012	+
intron-3CDS	ENST00000473665	ENST00000409785		TCGA	LD	PRAD	TCGA-HC-A76X-01A	GGCX	chr2	85787938	-	KCMF1	chr2	85255012	+
Frame-shit	ENST00000286122	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000286122	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000286122	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000355163	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000355163	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000355163	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000479780	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000479780	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000479780	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000393208	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000393208	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000393208	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000355022	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000355022	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000355022	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000538234	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000538234	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000538234	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000393207	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
Frame-shit	ENST00000393207	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
5CDS-5UTR	ENST00000393207	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
intron-3CDS	ENST00000481948	ENST00000373019		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
intron-3CDS	ENST00000481948	ENST00000448721		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
intron-5UTR	ENST00000481948	ENST00000489537		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	BANP	chr16	88061256	+	SF3A3	chr1	38450451	-
3UTR-intron	ENST00000353383	ENST00000438045		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
3UTR-intron	ENST00000353383	ENST00000248633		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
3UTR-intron	ENST00000353383	ENST00000428214		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
3UTR-intron	ENST00000353383	ENST00000541751		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
intron-intron	ENST00000489697	ENST00000438045		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
intron-intron	ENST00000489697	ENST00000248633		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
intron-intron	ENST00000489697	ENST00000428214		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
intron-intron	ENST00000489697	ENST00000541751		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
5CDS-intron	ENST00000261641	ENST00000438045		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
5CDS-intron	ENST00000261641	ENST00000248633		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
5CDS-intron	ENST00000261641	ENST00000428214		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
5CDS-intron	ENST00000261641	ENST00000541751		TCGA	LD	PRAD	TCGA-HC-A8CY-01A	RAI1	chr17	17714169	+	PEX1	chr7	92148232	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D0-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HC-A8D1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000511367	ENST00000282507		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-intron	ENST00000511367	ENST00000513300		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000511367	ENST00000545528		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000511367	ENST00000504954		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
Frame-shit	ENST00000442743	ENST00000282507		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-intron	ENST00000442743	ENST00000513300		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000442743	ENST00000545528		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000442743	ENST00000504954		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
Frame-shit	ENST00000344624	ENST00000282507		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-intron	ENST00000344624	ENST00000513300		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000344624	ENST00000545528		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000344624	ENST00000504954		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
Frame-shit	ENST00000513349	ENST00000282507		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-intron	ENST00000513349	ENST00000513300		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000513349	ENST00000545528		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5CDS-5UTR	ENST00000513349	ENST00000504954		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
intron-3CDS	ENST00000504361	ENST00000282507		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
intron-intron	ENST00000504361	ENST00000513300		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
intron-5UTR	ENST00000504361	ENST00000545528		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
intron-5UTR	ENST00000504361	ENST00000504954		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	DROSHA	chr5	31526186	-	UGT3A2	chr5	36064452	-
5UTR-3CDS	ENST00000262043	ENST00000434459		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
5UTR-3UTR	ENST00000262043	ENST00000477661		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
5UTR-3UTR	ENST00000262043	ENST00000380872		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
5UTR-3UTR	ENST00000262043	ENST00000380859		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000509330	ENST00000434459		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000509330	ENST00000477661		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000509330	ENST00000380872		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000509330	ENST00000380859		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000393387	ENST00000434459		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000393387	ENST00000477661		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000393387	ENST00000380872		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000393387	ENST00000380859		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3CDS	ENST00000420043	ENST00000434459		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000420043	ENST00000477661		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000420043	ENST00000380872		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
intron-3UTR	ENST00000420043	ENST00000380859		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	PHF3	chr6	64346055	+	AKR1C1	chr10	5008106	+
5CDS-5UTR	ENST00000382751	ENST00000381554		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-5UTR	ENST00000382751	ENST00000290244		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-5UTR	ENST00000382751	ENST00000381540		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-5UTR	ENST00000382751	ENST00000445393		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-5UTR	ENST00000382751	ENST00000361534		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-5UTR	ENST00000382751	ENST00000413017		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-intron	ENST00000382751	ENST00000480893		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
5CDS-intron	ENST00000382751	ENST00000399442		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-5UTR	ENST00000492603	ENST00000381554		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-5UTR	ENST00000492603	ENST00000290244		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-5UTR	ENST00000492603	ENST00000381540		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-5UTR	ENST00000492603	ENST00000445393		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-5UTR	ENST00000492603	ENST00000361534		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-5UTR	ENST00000492603	ENST00000413017		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-intron	ENST00000492603	ENST00000480893		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
intron-intron	ENST00000492603	ENST00000399442		TCGA	LD	PRAD	TCGA-HC-A9TE-01A	URB1	chr21	33745956	-	CRYZL1	chr21	35003863	-
In-frame	ENST00000406486	ENST00000312932		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-intron	ENST00000406486	ENST00000403484		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-intron	ENST00000406486	ENST00000405717		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-intron	ENST00000406486	ENST00000402592		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-3UTR	ENST00000406486	ENST00000459728		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
In-frame	ENST00000358431	ENST00000312932		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-intron	ENST00000358431	ENST00000403484		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-intron	ENST00000358431	ENST00000405717		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-intron	ENST00000358431	ENST00000402592		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
5CDS-3UTR	ENST00000358431	ENST00000459728		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
intron-3CDS	ENST00000401395	ENST00000312932		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
intron-intron	ENST00000401395	ENST00000403484		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
intron-intron	ENST00000401395	ENST00000405717		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
intron-intron	ENST00000401395	ENST00000402592		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
intron-3UTR	ENST00000401395	ENST00000459728		TCGA	LD	PRAD	TCGA-HC-A9TH-01A	KIAA1671	chr22	25445331	+	SEC14L2	chr22	30795632	+
Frame-shit	ENST00000302538	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000302538	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000302538	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000544583	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
In-frame	ENST00000544583	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000544583	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000572441	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000572441	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-5UTR	ENST00000572441	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000574437	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000574437	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000574437	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000291107	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000291107	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000291107	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000543210	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000543210	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-5UTR	ENST00000543210	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000536794	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
Frame-shit	ENST00000536794	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
5CDS-5UTR	ENST00000536794	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000573895	ENST00000319004		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-3CDS	ENST00000573895	ENST00000437269		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-5UTR	ENST00000573895	ENST00000576778		TCGA	LD	PRAD	TCGA-HI-7171-01A	ABR	chr17	953290	-	GEMIN4	chr17	651272	-
intron-5UTR	ENST00000402530	ENST00000291547		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000402530	ENST00000432907		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000402530	ENST00000607150		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000274979	ENST00000291547		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000274979	ENST00000432907		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000274979	ENST00000607150		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000402430	ENST00000291547		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5CDS-5UTR	ENST00000402430	ENST00000432907		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5CDS-intron	ENST00000402430	ENST00000607150		TCGA	LD	PRAD	TCGA-HI-7171-01A	ANO7	chr2	242157796	+	PKNOX1	chr21	44424436	+
5UTR-3CDS	ENST00000512055	ENST00000264995		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-3CDS	ENST00000512055	ENST00000425847		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-intron	ENST00000512055	ENST00000506946		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-3CDS	ENST00000429747	ENST00000264995		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-3CDS	ENST00000429747	ENST00000425847		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-intron	ENST00000429747	ENST00000506946		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-3CDS	ENST00000512332	ENST00000264995		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-3CDS	ENST00000512332	ENST00000425847		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-intron	ENST00000512332	ENST00000506946		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-3CDS	ENST00000511604	ENST00000264995		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-3CDS	ENST00000511604	ENST00000425847		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5UTR-intron	ENST00000511604	ENST00000506946		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-3CDS	ENST00000502818	ENST00000264995		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-3CDS	ENST00000502818	ENST00000425847		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-intron	ENST00000502818	ENST00000506946		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-3CDS	ENST00000503204	ENST00000264995		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-3CDS	ENST00000503204	ENST00000425847		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
intron-intron	ENST00000503204	ENST00000506946		TCGA	LD	PRAD	TCGA-HI-7171-01A	CPNE4	chr3	131753411	-	MRPL3	chr3	131220559	-
5CDS-5UTR	ENST00000261726	ENST00000571570		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000572639		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000579978		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000344877		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000582222		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000577425		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000571024		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000574924		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000572851		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000357385		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000584314		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000571874		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000578550		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000577747		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000579133		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000392376		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000583839		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000578544		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5CDS-5UTR	ENST00000261726	ENST00000575195		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000571570		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000572639		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000579978		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000344877		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000582222		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000577425		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000571024		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000574924		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000572851		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000357385		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000584314		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000571874		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000578550		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000577747		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000579133		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000392376		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000583839		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000578544		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
intron-5UTR	ENST00000551604	ENST00000575195		TCGA	LD	PRAD	TCGA-HI-7171-01A	CUX2	chr12	111472044	+	ANAPC11	chr17	79852343	+
5UTR-3CDS	ENST00000473039	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5UTR-3CDS	ENST00000473039	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5UTR-3CDS	ENST00000473039	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5UTR-5UTR	ENST00000473039	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5UTR-5UTR	ENST00000473039	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5UTR-3UTR	ENST00000473039	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000373624	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000373624	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000373624	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373624	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373624	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000373624	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000542603	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000542603	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000542603	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000542603	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000542603	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000542603	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000394219	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000394219	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000394219	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000394219	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000394219	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000394219	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000373620	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000373620	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
In-frame	ENST00000373620	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373620	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373620	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000373620	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000394215	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000394215	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000394215	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000394215	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000394215	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000394215	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000373618	ENST00000342287		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000373618	ENST00000373487		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000373618	ENST00000373489		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373618	ENST00000373483		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373618	ENST00000447726		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000373618	ENST00000538998		TCGA	LD	PRAD	TCGA-HI-7171-01A	DENND1A	chr9	126345448	-	PBX3	chr9	128691934	+
5CDS-intron	ENST00000572933	ENST00000431639		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-5UTR	ENST00000572933	ENST00000316024		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000572933	ENST00000457584		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000572933	ENST00000396463		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000572933	ENST00000534050		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000389173	ENST00000431639		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-5UTR	ENST00000389173	ENST00000316024		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000389173	ENST00000457584		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000389173	ENST00000396463		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
5CDS-intron	ENST00000389173	ENST00000534050		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000570791	ENST00000431639		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-5UTR	ENST00000570791	ENST00000316024		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000570791	ENST00000457584		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000570791	ENST00000396463		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000570791	ENST00000534050		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000082259	ENST00000431639		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-5UTR	ENST00000082259	ENST00000316024		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000082259	ENST00000457584		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000082259	ENST00000396463		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
intron-intron	ENST00000082259	ENST00000534050		TCGA	LD	PRAD	TCGA-HI-7171-01A	DNAH2	chr17	7727285	+	WRAP53	chr17	7590695	+
In-frame	ENST00000263360	ENST00000294309		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000263360	ENST00000542467		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
5CDS-3UTR	ENST00000263360	ENST00000442692		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000528180	ENST00000294309		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000528180	ENST00000542467		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
5CDS-3UTR	ENST00000528180	ENST00000442692		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000327320	ENST00000294309		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000327320	ENST00000542467		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
5CDS-3UTR	ENST00000327320	ENST00000442692		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000351625	ENST00000294309		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
In-frame	ENST00000351625	ENST00000542467		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
5CDS-3UTR	ENST00000351625	ENST00000442692		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
intron-3CDS	ENST00000527888	ENST00000294309		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
intron-3CDS	ENST00000527888	ENST00000542467		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
intron-3UTR	ENST00000527888	ENST00000442692		TCGA	LD	PRAD	TCGA-HI-7171-01A	EED	chr11	85956385	+	TPCN2	chr11	68834971	+
5CDS-intron	ENST00000526148	ENST00000517939		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000526148	ENST00000517781		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000526148	ENST00000378439		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000526148	ENST00000276659		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-intron	ENST00000525681	ENST00000517939		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000525681	ENST00000517781		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000525681	ENST00000378439		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000525681	ENST00000276659		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-intron	ENST00000339995	ENST00000517939		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000339995	ENST00000517781		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000339995	ENST00000378439		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000339995	ENST00000276659		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-intron	ENST00000396525	ENST00000517939		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000396525	ENST00000517781		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000396525	ENST00000378439		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000396525	ENST00000276659		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
intron-intron	ENST00000525995	ENST00000517939		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000525995	ENST00000517781		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000525995	ENST00000378439		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
intron-5UTR	ENST00000525995	ENST00000276659		TCGA	LD	PRAD	TCGA-HI-7171-01A	EIF4G2	chr11	10828802	-	RSPO2	chr8	109095035	-
5CDS-5UTR	ENST00000391950	ENST00000453134		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000391950	ENST00000583458		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000391950	ENST00000415831		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000391950	ENST00000582043		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000391950	ENST00000580155		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000391950	ENST00000584778		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000391950	ENST00000578887		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000389167	ENST00000453134		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000389167	ENST00000583458		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000389167	ENST00000415831		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000389167	ENST00000582043		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000389167	ENST00000580155		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000389167	ENST00000584778		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000389167	ENST00000578887		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000380728	ENST00000453134		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000380728	ENST00000583458		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000380728	ENST00000415831		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-intron	ENST00000380728	ENST00000582043		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000380728	ENST00000580155		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000380728	ENST00000584778		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
5CDS-5UTR	ENST00000380728	ENST00000578887		TCGA	LD	PRAD	TCGA-HI-7171-01A	GPS2	chr17	7217807	-	RBFOX3	chr17	77303906	-
intron-3CDS	ENST00000376281	ENST00000447225		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000376281	ENST00000308009		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000376263	ENST00000447225		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000376263	ENST00000308009		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000376264	ENST00000447225		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000376264	ENST00000308009		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000351839	ENST00000447225		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000351839	ENST00000308009		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000360384	ENST00000447225		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
intron-3CDS	ENST00000360384	ENST00000308009		TCGA	LD	PRAD	TCGA-HI-7171-01A	HNRNPK	chr9	86589156	-	SLC16A11	chr17	6945047	-
3UTR-3CDS	ENST00000504876	ENST00000296597		TCGA	LD	PRAD	TCGA-HI-7171-01A	PART1	chr5	59784250	+	NDUFAF2	chr5	60368952	+
3UTR-intron	ENST00000504876	ENST00000511107		TCGA	LD	PRAD	TCGA-HI-7171-01A	PART1	chr5	59784250	+	NDUFAF2	chr5	60368952	+
3UTR-3UTR	ENST00000504876	ENST00000512623		TCGA	LD	PRAD	TCGA-HI-7171-01A	PART1	chr5	59784250	+	NDUFAF2	chr5	60368952	+
Frame-shit	ENST00000342287	ENST00000545391		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000342287	ENST00000361171		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000342287	ENST00000436593		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000342287	ENST00000535766		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000342287	ENST00000485886		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000373487	ENST00000545391		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000373487	ENST00000361171		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000373487	ENST00000436593		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000373487	ENST00000535766		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000373487	ENST00000485886		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000373489	ENST00000545391		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000373489	ENST00000361171		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000373489	ENST00000436593		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000373489	ENST00000535766		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000373489	ENST00000485886		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5UTR-3CDS	ENST00000373483	ENST00000545391		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5UTR-3CDS	ENST00000373483	ENST00000361171		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5UTR-3CDS	ENST00000373483	ENST00000436593		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5UTR-intron	ENST00000373483	ENST00000535766		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5UTR-intron	ENST00000373483	ENST00000485886		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000447726	ENST00000545391		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000447726	ENST00000361171		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
Frame-shit	ENST00000447726	ENST00000436593		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000447726	ENST00000535766		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5CDS-intron	ENST00000447726	ENST00000485886		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
intron-3CDS	ENST00000538998	ENST00000545391		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
intron-3CDS	ENST00000538998	ENST00000361171		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
intron-3CDS	ENST00000538998	ENST00000436593		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
intron-intron	ENST00000538998	ENST00000535766		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
intron-intron	ENST00000538998	ENST00000485886		TCGA	LD	PRAD	TCGA-HI-7171-01A	PBX3	chr9	128510902	+	MVB12B	chr9	129102787	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000332149	ENST00000375856		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42860321	-	IRS2	chr13	110408655	-
Frame-shit	ENST00000398585	ENST00000375856		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42860321	-	IRS2	chr13	110408655	-
Frame-shit	ENST00000458356	ENST00000375856		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42860321	-	IRS2	chr13	110408655	-
intron-3CDS	ENST00000497881	ENST00000375856		TCGA	LD	PRAD	TCGA-HI-7171-01A	TMPRSS2	chr21	42860321	-	IRS2	chr13	110408655	-
3UTR-intron	ENST00000591658	ENST00000582520		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
3UTR-5UTR	ENST00000591658	ENST00000269321		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
3UTR-5UTR	ENST00000591658	ENST00000400721		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
3UTR-5UTR	ENST00000591658	ENST00000584461		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
3UTR-5UTR	ENST00000591658	ENST00000541078		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
3UTR-5UTR	ENST00000591658	ENST00000580685		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
3UTR-5UTR	ENST00000591658	ENST00000581876		TCGA	LD	PRAD	TCGA-HI-7171-01A	TTC25	chr17	40087090	+	ARHGDIA	chr17	79827833	-
5CDS-intron	ENST00000260641	ENST00000448662		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000431808		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000284776		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000437304		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000319471		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000449407		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000355634		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000260641	ENST00000393528		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000260641	ENST00000418609		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000260641	ENST00000498125		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-intron	ENST00000476840	ENST00000448662		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000431808		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000284776		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000437304		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000319471		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000449407		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000355634		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-5UTR	ENST00000476840	ENST00000393528		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-intron	ENST00000476840	ENST00000418609		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
intron-intron	ENST00000476840	ENST00000498125		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000542850	ENST00000448662		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000431808		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000284776		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000437304		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000319471		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000449407		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000355634		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000542850	ENST00000393528		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000542850	ENST00000418609		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000542850	ENST00000498125		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000377982	ENST00000448662		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000431808		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000284776		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000437304		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000319471		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000449407		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000355634		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-5UTR	ENST00000377982	ENST00000393528		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000377982	ENST00000418609		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5CDS-intron	ENST00000377982	ENST00000498125		TCGA	LD	PRAD	TCGA-J4-8198-01A	ACTR2	chr2	65482828	+	SORBS2	chr4	186696520	-
5UTR-3CDS	ENST00000434000	ENST00000293404		TCGA	LD	PRAD	TCGA-J4-8198-01A	GPATCH8	chr17	42552197	-	NAGS	chr17	42082069	+
Frame-shit	ENST00000591680	ENST00000293404		TCGA	LD	PRAD	TCGA-J4-8198-01A	GPATCH8	chr17	42552197	-	NAGS	chr17	42082069	+
intron-3CDS	ENST00000586265	ENST00000293404		TCGA	LD	PRAD	TCGA-J4-8198-01A	GPATCH8	chr17	42552197	-	NAGS	chr17	42082069	+
Frame-shit	ENST00000592154	ENST00000293404		TCGA	LD	PRAD	TCGA-J4-8198-01A	GPATCH8	chr17	42552197	-	NAGS	chr17	42082069	+
intron-3CDS	ENST00000588554	ENST00000293404		TCGA	LD	PRAD	TCGA-J4-8198-01A	GPATCH8	chr17	42552197	-	NAGS	chr17	42082069	+
Frame-shit	ENST00000402136	ENST00000318407		TCGA	LD	PRAD	TCGA-J4-8200-01A	THAP4	chr2	242541311	-	BOK	chr2	242509540	+
Frame-shit	ENST00000407315	ENST00000318407		TCGA	LD	PRAD	TCGA-J4-8200-01A	THAP4	chr2	242541311	-	BOK	chr2	242509540	+
intron-3CDS	ENST00000402545	ENST00000318407		TCGA	LD	PRAD	TCGA-J4-8200-01A	THAP4	chr2	242541311	-	BOK	chr2	242509540	+
5UTR-3CDS	ENST00000497486	ENST00000318407		TCGA	LD	PRAD	TCGA-J4-8200-01A	THAP4	chr2	242541311	-	BOK	chr2	242509540	+
5UTR-3CDS	ENST00000495013	ENST00000360631		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
5UTR-3CDS	ENST00000495013	ENST00000255448		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
5UTR-3CDS	ENST00000495013	ENST00000379892		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
5UTR-intron	ENST00000495013	ENST00000379893		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
5UTR-intron	ENST00000495013	ENST00000460982		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-3CDS	ENST00000258648	ENST00000360631		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-3CDS	ENST00000258648	ENST00000255448		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-3CDS	ENST00000258648	ENST00000379892		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-intron	ENST00000258648	ENST00000379893		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-intron	ENST00000258648	ENST00000460982		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-3CDS	ENST00000378586	ENST00000360631		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-3CDS	ENST00000378586	ENST00000255448		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-3CDS	ENST00000378586	ENST00000379892		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-intron	ENST00000378586	ENST00000379893		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
intron-intron	ENST00000378586	ENST00000460982		TCGA	LD	PRAD	TCGA-J4-A67K-01A	MED4	chr13	48651289	-	DCLK1	chr13	36521594	-
5UTR-3CDS	ENST00000334527	ENST00000320785		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3UTR	ENST00000334527	ENST00000573815		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3CDS	ENST00000299734	ENST00000320785		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3UTR	ENST00000299734	ENST00000573815		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3CDS	ENST00000585098	ENST00000320785		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3UTR	ENST00000585098	ENST00000573815		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3CDS	ENST00000380025	ENST00000320785		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3UTR	ENST00000380025	ENST00000573815		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3CDS	ENST00000402554	ENST00000320785		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5UTR-3UTR	ENST00000402554	ENST00000573815		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
3UTR-3CDS	ENST00000583066	ENST00000320785		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
3UTR-3UTR	ENST00000583066	ENST00000573815		TCGA	LD	PRAD	TCGA-J4-A67K-01A	NDEL1	chr17	8339363	+	KIF1C	chr17	4918038	+
5CDS-intron	ENST00000216037	ENST00000362190		TCGA	LD	PRAD	TCGA-J4-A67K-01A	XBP1	chr22	29196286	-	MIR22HG	chr17	1619566	-
5CDS-intron	ENST00000403532	ENST00000362190		TCGA	LD	PRAD	TCGA-J4-A67K-01A	XBP1	chr22	29196286	-	MIR22HG	chr17	1619566	-
intron-intron	ENST00000405219	ENST00000362190		TCGA	LD	PRAD	TCGA-J4-A67K-01A	XBP1	chr22	29196286	-	MIR22HG	chr17	1619566	-
5CDS-intron	ENST00000344347	ENST00000362190		TCGA	LD	PRAD	TCGA-J4-A67K-01A	XBP1	chr22	29196286	-	MIR22HG	chr17	1619566	-
Frame-shit	ENST00000371518	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371518	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371518	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371518	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371518	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000361387	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000361387	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000361387	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000361387	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000361387	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000477786	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000477786	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000477786	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000477786	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000477786	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000371523	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000371523	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000371523	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000371523	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
intron-3CDS	ENST00000371523	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000346617	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000346617	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000346617	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000346617	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000346617	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371515	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371515	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371515	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371515	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000371515	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000216923	ENST00000373803		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000216923	ENST00000359675		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000216923	ENST00000349004		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000216923	ENST00000373773		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
Frame-shit	ENST00000216923	ENST00000540765		TCGA	LD	PRAD	TCGA-J4-A67K-01A	ZFP64	chr20	50803371	-	NDRG3	chr20	35284935	-
In-frame	ENST00000552285	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000552285	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000552285	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000315970	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000315970	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000315970	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000439210	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000439210	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000439210	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000389146	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000389146	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000389146	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000413095	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000413095	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000413095	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000551035	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000551035	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000551035	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000435406	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000435406	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
intron-3CDS	ENST00000435406	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000257966	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000257966	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000257966	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000389142	ENST00000267103		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000389142	ENST00000548632		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
In-frame	ENST00000389142	ENST00000549488		TCGA	LD	PRAD	TCGA-J4-A67M-01A	OS9	chr12	58090156	+	C12orf10	chr12	53700464	+
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
In-frame	ENST00000341197	ENST00000336452		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000336458		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000576930		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000572815		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000573542		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000419711		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000571955		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000341197	ENST00000416016		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
In-frame	ENST00000423191	ENST00000336452		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000336458		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000576930		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000572815		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000573542		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000419711		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000571955		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000423191	ENST00000416016		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
In-frame	ENST00000372999	ENST00000336452		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000336458		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000576930		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000572815		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000573542		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000419711		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000571955		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000372999	ENST00000416016		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
In-frame	ENST00000358131	ENST00000336452		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000336458		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000576930		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000572815		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000573542		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000419711		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000571955		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5CDS-5UTR	ENST00000358131	ENST00000416016		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-3CDS	ENST00000435864	ENST00000336452		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000336458		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000576930		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000572815		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000573542		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000419711		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000571955		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
intron-5UTR	ENST00000435864	ENST00000416016		TCGA	LD	PRAD	TCGA-J4-A67N-01A	TOX2	chr20	42635432	+	EIF5A	chr17	7212934	+
5UTR-intron	ENST00000169298	ENST00000602866		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
5UTR-5UTR	ENST00000169298	ENST00000298852		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
5UTR-5UTR	ENST00000169298	ENST00000530912		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
5UTR-intron	ENST00000457772	ENST00000602866		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
5UTR-5UTR	ENST00000457772	ENST00000298852		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
5UTR-5UTR	ENST00000457772	ENST00000530912		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
intron-intron	ENST00000448044	ENST00000602866		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
intron-5UTR	ENST00000448044	ENST00000298852		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
intron-5UTR	ENST00000448044	ENST00000530912		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
intron-intron	ENST00000487031	ENST00000602866		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
intron-5UTR	ENST00000487031	ENST00000298852		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
intron-5UTR	ENST00000487031	ENST00000530912		TCGA	LD	PRAD	TCGA-J4-A67R-01A	ST6GAL1	chr3	186681714	+	PSMC3	chr11	47447833	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A67R-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000296597	ENST00000536769		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000296597	ENST00000538617		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000296597	ENST00000546120		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000296597	ENST00000339647		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-intron	ENST00000296597	ENST00000536661		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000511107	ENST00000536769		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000511107	ENST00000538617		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000511107	ENST00000546120		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000511107	ENST00000339647		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
5CDS-intron	ENST00000511107	ENST00000536661		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000512623	ENST00000536769		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000512623	ENST00000538617		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000512623	ENST00000546120		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000512623	ENST00000339647		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
intron-intron	ENST00000512623	ENST00000536661		TCGA	LD	PRAD	TCGA-J4-A67S-01A	NDUFAF2	chr5	60241209	+	UBC	chr12	125398320	-
Frame-shit	ENST00000601806	ENST00000277865		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000601806	ENST00000537649		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000601806	ENST00000544149		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
5CDS-intron	ENST00000601806	ENST00000465164		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
In-frame	ENST00000291281	ENST00000277865		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
In-frame	ENST00000291281	ENST00000537649		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
In-frame	ENST00000291281	ENST00000544149		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
5CDS-intron	ENST00000291281	ENST00000465164		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
In-frame	ENST00000433867	ENST00000277865		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
In-frame	ENST00000433867	ENST00000537649		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
In-frame	ENST00000433867	ENST00000544149		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
5CDS-intron	ENST00000433867	ENST00000465164		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000600194	ENST00000277865		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000600194	ENST00000537649		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000600194	ENST00000544149		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
5CDS-intron	ENST00000600194	ENST00000465164		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000595515	ENST00000277865		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000595515	ENST00000537649		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
Frame-shit	ENST00000595515	ENST00000544149		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
5CDS-intron	ENST00000595515	ENST00000465164		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
intron-3CDS	ENST00000593492	ENST00000277865		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
intron-3CDS	ENST00000593492	ENST00000537649		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
intron-3CDS	ENST00000593492	ENST00000544149		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
intron-intron	ENST00000593492	ENST00000465164		TCGA	LD	PRAD	TCGA-J4-A67S-01A	PRKD2	chr19	47192794	-	GLUD1	chr10	88819030	-
5UTR-3UTR	ENST00000345093	ENST00000444631		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000345093	ENST00000336133		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000345093	ENST00000552080		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000394013	ENST00000444631		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000394013	ENST00000336133		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000394013	ENST00000552080		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
intron-3UTR	ENST00000552656	ENST00000444631		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
intron-intron	ENST00000552656	ENST00000336133		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
intron-intron	ENST00000552656	ENST00000552080		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000552244	ENST00000444631		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000552244	ENST00000336133		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000552244	ENST00000552080		TCGA	LD	PRAD	TCGA-J4-A67S-01A	RNF41	chr12	56615544	-	SARNP	chr12	56146624	-
intron-3CDS	ENST00000513024	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000513024	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000513024	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000513024	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000513024	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-3CDS	ENST00000509638	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-3CDS	ENST00000509638	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-intron	ENST00000509638	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-intron	ENST00000509638	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5UTR-5UTR	ENST00000509638	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000508501	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000508501	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000508501	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000508501	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000508501	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000512946	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000512946	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000512946	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000512946	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512946	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000313860	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000313860	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000313860	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000313860	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000313860	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000512632	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000512632	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000512632	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000512632	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512632	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000512820	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
In-frame	ENST00000512820	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000512820	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000512820	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-5UTR	ENST00000512820	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000503057	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000503057	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000503057	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000503057	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000503057	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000511496	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000511496	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000511496	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000511496	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000511496	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000514096	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000514096	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000514096	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000514096	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000514096	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000509277	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000509277	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000509277	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000509277	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509277	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000396595	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000396595	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000396595	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000396595	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000396595	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000381753	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000381753	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000381753	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000381753	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000381753	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000509454	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000509454	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000509454	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000509454	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000509454	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000515785	ENST00000554144		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-3CDS	ENST00000515785	ENST00000420433		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000556376		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000381260		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000337881		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000515785	ENST00000605395		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-intron	ENST00000515785	ENST00000508121		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000503639		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000553379		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000381255		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000317745		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000555760		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
intron-5UTR	ENST00000515785	ENST00000556614		TCGA	LD	PRAD	TCGA-J4-A67T-01A	LIMCH1	chr4	41362953	+	HOPX	chr4	57522178	-
5CDS-intron	ENST00000576634	ENST00000576906		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000407558		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000608722		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000424546		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000576634	ENST00000573580		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000576634	ENST00000421765		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000576634	ENST00000610180		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000576634	ENST00000608993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000576634	ENST00000360862		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000576634	ENST00000414063		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000570551		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000572942		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000576916		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000575076		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000577013		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000570819		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000576634	ENST00000572584		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000576906		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000407558		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000608722		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000424546		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000341633	ENST00000573580		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000341633	ENST00000421765		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000341633	ENST00000610180		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000341633	ENST00000608993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000341633	ENST00000360862		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000341633	ENST00000414063		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000570551		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000572942		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000576916		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000575076		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000577013		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000570819		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000341633	ENST00000572584		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000576906		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000407558		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000608722		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000424546		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-5UTR	ENST00000417763	ENST00000573580		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-5UTR	ENST00000417763	ENST00000421765		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-5UTR	ENST00000417763	ENST00000610180		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-5UTR	ENST00000417763	ENST00000608993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-5UTR	ENST00000417763	ENST00000360862		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-5UTR	ENST00000417763	ENST00000414063		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000570551		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000572942		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000576916		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000575076		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000577013		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000570819		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5UTR-intron	ENST00000417763	ENST00000572584		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000576906		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000407558		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000608722		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000424546		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000571025	ENST00000573580		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000571025	ENST00000421765		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000571025	ENST00000610180		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000571025	ENST00000608993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000571025	ENST00000360862		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-5UTR	ENST00000571025	ENST00000414063		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000570551		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000572942		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000576916		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000575076		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000577013		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000570819		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
5CDS-intron	ENST00000571025	ENST00000572584		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000576906		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000407558		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000608722		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000424546		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000572600	ENST00000573580		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000572600	ENST00000421765		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000572600	ENST00000610180		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000572600	ENST00000608993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000572600	ENST00000360862		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000572600	ENST00000414063		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000570551		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000572942		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000576916		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000575076		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000577013		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000570819		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000572600	ENST00000572584		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000576906		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000407558		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000608722		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000424546		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000445795	ENST00000573580		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000445795	ENST00000421765		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000445795	ENST00000610180		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000445795	ENST00000608993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000445795	ENST00000360862		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-5UTR	ENST00000445795	ENST00000414063		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000570551		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000572942		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000576916		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000575076		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000577013		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000570819		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
intron-intron	ENST00000445795	ENST00000572584		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	CLUAP1	chr16	3551089	+	NAA60	chr16	3529471	+
Frame-shit	ENST00000263773	ENST00000399249		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	FNBP4	chr11	47752926	-	MYBPC3	chr11	47373056	-
Frame-shit	ENST00000263773	ENST00000545968		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	FNBP4	chr11	47752926	-	MYBPC3	chr11	47373056	-
Frame-shit	ENST00000263773	ENST00000256993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	FNBP4	chr11	47752926	-	MYBPC3	chr11	47373056	-
intron-3CDS	ENST00000534003	ENST00000399249		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	FNBP4	chr11	47752926	-	MYBPC3	chr11	47373056	-
intron-3CDS	ENST00000534003	ENST00000545968		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	FNBP4	chr11	47752926	-	MYBPC3	chr11	47373056	-
intron-3CDS	ENST00000534003	ENST00000256993		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	FNBP4	chr11	47752926	-	MYBPC3	chr11	47373056	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6G1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000336375	ENST00000301178		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
Frame-shit	ENST00000336375	ENST00000359092		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
5CDS-intron	ENST00000336375	ENST00000594880		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
5CDS-intron	ENST00000336375	ENST00000593513		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
Frame-shit	ENST00000475741	ENST00000301178		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
Frame-shit	ENST00000475741	ENST00000359092		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
5CDS-intron	ENST00000475741	ENST00000594880		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
5CDS-intron	ENST00000475741	ENST00000593513		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
In-frame	ENST00000351273	ENST00000301178		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
In-frame	ENST00000351273	ENST00000359092		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
5CDS-intron	ENST00000351273	ENST00000594880		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
5CDS-intron	ENST00000351273	ENST00000593513		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
intron-3CDS	ENST00000489084	ENST00000301178		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
intron-3CDS	ENST00000489084	ENST00000359092		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
intron-intron	ENST00000489084	ENST00000594880		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
intron-intron	ENST00000489084	ENST00000593513		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	ACPP	chr3	132075699	+	AXL	chr19	41748788	+
Frame-shit	ENST00000345985	ENST00000373548		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-5UTR	ENST00000345985	ENST00000373541		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-intron	ENST00000345985	ENST00000490081		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
Frame-shit	ENST00000381685	ENST00000373548		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-5UTR	ENST00000381685	ENST00000373541		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-intron	ENST00000381685	ENST00000490081		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
In-frame	ENST00000542668	ENST00000373548		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-5UTR	ENST00000542668	ENST00000373541		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-intron	ENST00000542668	ENST00000490081		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
Frame-shit	ENST00000538384	ENST00000373548		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-5UTR	ENST00000538384	ENST00000373541		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-intron	ENST00000538384	ENST00000490081		TCGA	LD	PRAD	TCGA-J4-A6G3-01A	NOL10	chr2	10794607	-	HDAC1	chr1	32782266	+
5CDS-3UTR	ENST00000533861	ENST00000525620		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-5UTR	ENST00000533861	ENST00000535888		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-5UTR	ENST00000533861	ENST00000544661		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-5UTR	ENST00000533861	ENST00000332793		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-intron	ENST00000533861	ENST00000526800		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-3UTR	ENST00000333449	ENST00000525620		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-5UTR	ENST00000333449	ENST00000535888		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-5UTR	ENST00000333449	ENST00000544661		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-5UTR	ENST00000333449	ENST00000332793		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5CDS-intron	ENST00000333449	ENST00000526800		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMEM179B	chr11	62556898	+	SLC22A10	chr11	63064775	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-A6M7-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-3UTR	ENST00000377022	ENST00000490577		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CASZ1	chr1	10753931	-	DLEU1	chr13	51102002	+
5CDS-intron	ENST00000377022	ENST00000378180		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CASZ1	chr1	10753931	-	DLEU1	chr13	51102002	+
5CDS-3UTR	ENST00000344008	ENST00000490577		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CASZ1	chr1	10753931	-	DLEU1	chr13	51102002	+
5CDS-intron	ENST00000344008	ENST00000378180		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CASZ1	chr1	10753931	-	DLEU1	chr13	51102002	+
5UTR-3UTR	ENST00000478728	ENST00000490577		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CASZ1	chr1	10753931	-	DLEU1	chr13	51102002	+
5UTR-intron	ENST00000478728	ENST00000378180		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CASZ1	chr1	10753931	-	DLEU1	chr13	51102002	+
5CDS-intron	ENST00000540468	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000540468	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000540468	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000540468	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000540468	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000540468	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000539919	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000539919	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000539919	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000539919	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000539919	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000539919	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000258091	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000258091	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000258091	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000258091	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000258091	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000258091	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
intron-intron	ENST00000398422	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
intron-intron	ENST00000398422	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
intron-intron	ENST00000398422	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
intron-intron	ENST00000398422	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
intron-intron	ENST00000398422	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
intron-intron	ENST00000398422	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000537131	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000537131	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000537131	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000537131	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000537131	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000537131	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000538797	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000538797	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000538797	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000538797	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000538797	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
5CDS-intron	ENST00000538797	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
3UTR-intron	ENST00000473786	ENST00000272321		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
3UTR-intron	ENST00000473786	ENST00000409199		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
3UTR-intron	ENST00000473786	ENST00000409120		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
3UTR-intron	ENST00000473786	ENST00000398544		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
3UTR-intron	ENST00000473786	ENST00000409562		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
3UTR-intron	ENST00000473786	ENST00000409835		TCGA	LD	PRAD	TCGA-J4-A83I-01A	CCT7	chr2	73471843	+	WDPCP	chr2	63938725	-
In-frame	ENST00000327671	ENST00000324079		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
In-frame	ENST00000327671	ENST00000523656		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
In-frame	ENST00000327671	ENST00000427263		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5CDS-5UTR	ENST00000327671	ENST00000524229		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000518672	ENST00000324079		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000518672	ENST00000523656		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000518672	ENST00000427263		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5CDS-5UTR	ENST00000518672	ENST00000524229		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000524021	ENST00000324079		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000524021	ENST00000523656		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000524021	ENST00000427263		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5CDS-5UTR	ENST00000524021	ENST00000524229		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
In-frame	ENST00000335589	ENST00000324079		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
In-frame	ENST00000335589	ENST00000523656		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
In-frame	ENST00000335589	ENST00000427263		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5CDS-5UTR	ENST00000335589	ENST00000524229		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5UTR-3CDS	ENST00000518076	ENST00000324079		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5UTR-3CDS	ENST00000518076	ENST00000523656		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5UTR-3CDS	ENST00000518076	ENST00000427263		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
5UTR-5UTR	ENST00000518076	ENST00000524229		TCGA	LD	PRAD	TCGA-J4-A83I-01A	FUT10	chr8	33310734	-	TDRP	chr8	444597	-
Frame-shit	ENST00000357716	ENST00000256429		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000357716	ENST00000579025		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000357716	ENST00000398398		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000357716	ENST00000583046		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
Frame-shit	ENST00000486284	ENST00000256429		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000486284	ENST00000579025		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000486284	ENST00000398398		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000486284	ENST00000583046		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
Frame-shit	ENST00000389336	ENST00000256429		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000389336	ENST00000579025		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000389336	ENST00000398398		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000389336	ENST00000583046		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
Frame-shit	ENST00000402647	ENST00000256429		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000402647	ENST00000579025		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000402647	ENST00000398398		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000402647	ENST00000583046		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
Frame-shit	ENST00000403881	ENST00000256429		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000403881	ENST00000579025		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000403881	ENST00000398398		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
5CDS-intron	ENST00000403881	ENST00000583046		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
intron-3CDS	ENST00000458641	ENST00000256429		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
intron-intron	ENST00000458641	ENST00000579025		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
intron-intron	ENST00000458641	ENST00000398398		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
intron-intron	ENST00000458641	ENST00000583046		TCGA	LD	PRAD	TCGA-J4-A83I-01A	GRM7	chr3	7188355	+	MBD2	chr18	51715381	-
In-frame	ENST00000253193	ENST00000540746		TCGA	LD	PRAD	TCGA-J4-A83I-01A	LRP3	chr19	33685764	+	LSM14A	chr19	34685383	+
In-frame	ENST00000253193	ENST00000544216		TCGA	LD	PRAD	TCGA-J4-A83I-01A	LRP3	chr19	33685764	+	LSM14A	chr19	34685383	+
In-frame	ENST00000253193	ENST00000433627		TCGA	LD	PRAD	TCGA-J4-A83I-01A	LRP3	chr19	33685764	+	LSM14A	chr19	34685383	+
3UTR-3CDS	ENST00000568630	ENST00000370355		TCGA	LD	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41913496	+	SCD	chr10	102107821	+
intron-3CDS	ENST00000545763	ENST00000370355		TCGA	LD	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41913496	+	SCD	chr10	102107821	+
intron-3CDS	ENST00000389936	ENST00000370355		TCGA	LD	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41913496	+	SCD	chr10	102107821	+
intron-3CDS	ENST00000219905	ENST00000370355		TCGA	LD	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41913496	+	SCD	chr10	102107821	+
intron-3CDS	ENST00000566586	ENST00000370355		TCGA	LD	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41913496	+	SCD	chr10	102107821	+
intron-3CDS	ENST00000570161	ENST00000370355		TCGA	LD	PRAD	TCGA-J4-A83I-01A	MGA	chr15	41913496	+	SCD	chr10	102107821	+
5CDS-5UTR	ENST00000300289	ENST00000561603		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
5CDS-5UTR	ENST00000300289	ENST00000304330		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
5CDS-intron	ENST00000300289	ENST00000568413		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
3UTR-5UTR	ENST00000469684	ENST00000561603		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
3UTR-5UTR	ENST00000469684	ENST00000304330		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
3UTR-intron	ENST00000469684	ENST00000568413		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
5UTR-5UTR	ENST00000538521	ENST00000561603		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
5UTR-5UTR	ENST00000538521	ENST00000304330		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
5UTR-intron	ENST00000538521	ENST00000568413		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PDIA3	chr15	44038904	+	RPAP1	chr15	41829399	-
In-frame	ENST00000371953	ENST00000258111		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PTEN	chr10	89720875	+	KCNMB4	chr12	70793989	+
3UTR-3CDS	ENST00000472832	ENST00000258111		TCGA	LD	PRAD	TCGA-J4-A83I-01A	PTEN	chr10	89720875	+	KCNMB4	chr12	70793989	+
intron-3CDS	ENST00000460934	ENST00000396153		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
intron-3CDS	ENST00000460934	ENST00000371778		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
intron-3CDS	ENST00000460934	ENST00000545823		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
intron-intron	ENST00000460934	ENST00000472808		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
5UTR-3CDS	ENST00000367145	ENST00000396153		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
5UTR-3CDS	ENST00000367145	ENST00000371778		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
5UTR-3CDS	ENST00000367145	ENST00000545823		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
5UTR-intron	ENST00000367145	ENST00000472808		TCGA	LD	PRAD	TCGA-J4-AATV-01A	SLC45A3	chr1	205649522	-	FAF1	chr1	50941351	-
5CDS-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5CDS-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J4-AATV-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39846044	-
5UTR-3CDS	ENST00000374864	ENST00000357410		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-3CDS	ENST00000374864	ENST00000327619		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-intron	ENST00000374864	ENST00000497428		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-intron	ENST00000374864	ENST00000317304		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-3CDS	ENST00000535650	ENST00000357410		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-3CDS	ENST00000535650	ENST00000327619		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-intron	ENST00000535650	ENST00000497428		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-intron	ENST00000535650	ENST00000317304		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-3CDS	ENST00000262650	ENST00000357410		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-3CDS	ENST00000262650	ENST00000327619		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-intron	ENST00000262650	ENST00000497428		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-intron	ENST00000262650	ENST00000317304		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
intron-3CDS	ENST00000483727	ENST00000357410		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
intron-3CDS	ENST00000483727	ENST00000327619		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
intron-intron	ENST00000483727	ENST00000497428		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
intron-intron	ENST00000483727	ENST00000317304		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	ITCH	chr20	32957276	+	EYA2	chr20	45771698	+
5UTR-3CDS	ENST00000402574	ENST00000294889		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	MARK1	chr1	220754460	+	C1orf115	chr1	220869954	+
Frame-shit	ENST00000366918	ENST00000294889		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	MARK1	chr1	220754460	+	C1orf115	chr1	220869954	+
Frame-shit	ENST00000366917	ENST00000294889		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	MARK1	chr1	220754460	+	C1orf115	chr1	220869954	+
intron-3CDS	ENST00000485104	ENST00000294889		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	MARK1	chr1	220754460	+	C1orf115	chr1	220869954	+
5UTR-3CDS	ENST00000300557	ENST00000434000		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	PRR15L	chr17	46035023	-	GPATCH8	chr17	42483419	-
5UTR-3CDS	ENST00000300557	ENST00000591680		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	PRR15L	chr17	46035023	-	GPATCH8	chr17	42483419	-
5UTR-intron	ENST00000300557	ENST00000586265		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	PRR15L	chr17	46035023	-	GPATCH8	chr17	42483419	-
5UTR-intron	ENST00000300557	ENST00000592154		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	PRR15L	chr17	46035023	-	GPATCH8	chr17	42483419	-
5UTR-intron	ENST00000300557	ENST00000588554		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	PRR15L	chr17	46035023	-	GPATCH8	chr17	42483419	-
5CDS-3UTR	ENST00000507668	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	SERINC5	chr5	79551715	-	ATP8B5P	chr9	35444382	+
5CDS-3UTR	ENST00000512972	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	SERINC5	chr5	79551715	-	ATP8B5P	chr9	35444382	+
5CDS-3UTR	ENST00000509193	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	SERINC5	chr5	79551715	-	ATP8B5P	chr9	35444382	+
5CDS-3UTR	ENST00000512721	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	SERINC5	chr5	79551715	-	ATP8B5P	chr9	35444382	+
intron-3UTR	ENST00000513907	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	SERINC5	chr5	79551715	-	ATP8B5P	chr9	35444382	+
Frame-shit	ENST00000438423	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
Frame-shit	ENST00000267811	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000452095	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
Frame-shit	ENST00000333725	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
Frame-shit	ENST00000557843	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000560764	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000543579	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000537840	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000343827	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000559710	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
intron-3CDS	ENST00000559703	ENST00000256319		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TCF12	chr15	57356021	+	C14orf1	chr14	76118232	-
5CDS-3UTR	ENST00000336395	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TESK1	chr9	35606282	+	ATP8B5P	chr9	35433704	+
3UTR-3UTR	ENST00000498522	ENST00000430846		TCGA	LD	PRAD	TCGA-J4-AATZ-01A	TESK1	chr9	35606282	+	ATP8B5P	chr9	35433704	+
intron-3CDS	ENST00000392975	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000392975	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000392975	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-3CDS	ENST00000360793	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-intron	ENST00000360793	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-5UTR	ENST00000360793	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-3CDS	ENST00000584031	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000584031	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000584031	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-3CDS	ENST00000392976	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000392976	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000392976	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-3CDS	ENST00000582297	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-intron	ENST00000582297	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-5UTR	ENST00000582297	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-3CDS	ENST00000581573	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000581573	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000581573	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-3CDS	ENST00000448884	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-intron	ENST00000448884	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-5UTR	ENST00000448884	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-3CDS	ENST00000582034	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-intron	ENST00000582034	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
5UTR-5UTR	ENST00000582034	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-3CDS	ENST00000542042	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000542042	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000542042	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-3CDS	ENST00000581163	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000581163	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000581163	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-3CDS	ENST00000582997	ENST00000300408		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-intron	ENST00000582997	ENST00000511832		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
intron-5UTR	ENST00000582997	ENST00000508009		TCGA	LD	PRAD	TCGA-J9-A52B-01A	CYB561	chr17	61523606	-	PHB	chr17	47482566	-
Frame-shit	ENST00000430334	ENST00000269534		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
Frame-shit	ENST00000430334	ENST00000521789		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
Frame-shit	ENST00000430334	ENST00000435506		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000580404	ENST00000269534		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000580404	ENST00000521789		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000580404	ENST00000435506		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
Frame-shit	ENST00000421073	ENST00000269534		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
Frame-shit	ENST00000421073	ENST00000521789		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
Frame-shit	ENST00000421073	ENST00000435506		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000547603	ENST00000269534		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000547603	ENST00000521789		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000547603	ENST00000435506		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000548376	ENST00000269534		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000548376	ENST00000521789		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000548376	ENST00000435506		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000549277	ENST00000269534		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000549277	ENST00000521789		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
intron-3CDS	ENST00000549277	ENST00000435506		TCGA	LD	PRAD	TCGA-J9-A52B-01A	PLEKHM1	chr17	43545575	-	NT5C3B	chr17	39985204	-
Frame-shit	ENST00000216264	ENST00000038176		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
Frame-shit	ENST00000216264	ENST00000427130		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
5CDS-intron	ENST00000216264	ENST00000519858		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
5UTR-3CDS	ENST00000541677	ENST00000038176		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
5UTR-3CDS	ENST00000541677	ENST00000427130		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
5UTR-intron	ENST00000541677	ENST00000519858		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
intron-3CDS	ENST00000471929	ENST00000038176		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
intron-3CDS	ENST00000471929	ENST00000427130		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
intron-intron	ENST00000471929	ENST00000519858		TCGA	LD	PRAD	TCGA-J9-A52C-01A	CERK	chr22	47115983	-	NSMAF	chr8	59496759	-
5CDS-intron	ENST00000217246	ENST00000277198		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-3UTR	ENST00000217246	ENST00000297979		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-3UTR	ENST00000217246	ENST00000375315		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000217246	ENST00000395357		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000217246	ENST00000425634		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000217246	ENST00000433691		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000217246	ENST00000473778		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000310348	ENST00000277198		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-3UTR	ENST00000310348	ENST00000297979		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-3UTR	ENST00000310348	ENST00000375315		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000310348	ENST00000395357		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000310348	ENST00000425634		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000310348	ENST00000433691		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
5CDS-intron	ENST00000310348	ENST00000473778		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-intron	ENST00000464883	ENST00000277198		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-3UTR	ENST00000464883	ENST00000297979		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-3UTR	ENST00000464883	ENST00000375315		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-intron	ENST00000464883	ENST00000395357		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-intron	ENST00000464883	ENST00000425634		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-intron	ENST00000464883	ENST00000433691		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
3UTR-intron	ENST00000464883	ENST00000473778		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000402914	ENST00000277198		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000402914	ENST00000297979		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000402914	ENST00000375315		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000402914	ENST00000395357		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000402914	ENST00000425634		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000402914	ENST00000433691		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000402914	ENST00000473778		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000378058	ENST00000277198		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000378058	ENST00000297979		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000378058	ENST00000375315		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000378058	ENST00000395357		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000378058	ENST00000425634		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000378058	ENST00000433691		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000378058	ENST00000473778		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000407045	ENST00000277198		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000407045	ENST00000297979		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-3UTR	ENST00000407045	ENST00000375315		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000407045	ENST00000395357		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000407045	ENST00000425634		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000407045	ENST00000433691		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
intron-intron	ENST00000407045	ENST00000473778		TCGA	LD	PRAD	TCGA-J9-A52D-01A	MACROD2	chr20	14665605	+	C9orf3	chr9	97848964	+
In-frame	ENST00000252744	ENST00000381070		TCGA	LD	PRAD	TCGA-J9-A52D-01A	ZSWIM6	chr5	60628775	+	CWC27	chr5	64267530	+
5CDS-intron	ENST00000252744	ENST00000508024		TCGA	LD	PRAD	TCGA-J9-A52D-01A	ZSWIM6	chr5	60628775	+	CWC27	chr5	64267530	+
5CDS-3UTR	ENST00000252744	ENST00000545000		TCGA	LD	PRAD	TCGA-J9-A52D-01A	ZSWIM6	chr5	60628775	+	CWC27	chr5	64267530	+
intron-3CDS	ENST00000315930	ENST00000442713		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-3CDS	ENST00000315930	ENST00000269445		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-intron	ENST00000315930	ENST00000584977		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-intron	ENST00000315930	ENST00000578396		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-3CDS	ENST00000305414	ENST00000442713		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-3CDS	ENST00000305414	ENST00000269445		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-intron	ENST00000305414	ENST00000584977		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-intron	ENST00000305414	ENST00000578396		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
Frame-shit	ENST00000441825	ENST00000442713		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
Frame-shit	ENST00000441825	ENST00000269445		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000441825	ENST00000584977		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000441825	ENST00000578396		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
Frame-shit	ENST00000370603	ENST00000442713		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
Frame-shit	ENST00000370603	ENST00000269445		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000370603	ENST00000584977		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
5CDS-intron	ENST00000370603	ENST00000578396		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-3CDS	ENST00000541469	ENST00000442713		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-3CDS	ENST00000541469	ENST00000269445		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-intron	ENST00000541469	ENST00000584977		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
intron-intron	ENST00000541469	ENST00000578396		TCGA	LD	PRAD	TCGA-J9-A52E-01A	FGF13	chrX	137939674	-	DYM	chr18	46690157	-
Frame-shit	ENST00000449098	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
In-frame	ENST00000320084	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000336053	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000554969	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000556142	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000554455	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
In-frame	ENST00000430246	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000553753	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000555914	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000555309	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000556628	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000555883	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000556513	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000557201	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000553300	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
In-frame	ENST00000556897	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
Frame-shit	ENST00000420743	ENST00000298139		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	HNRNPC	chr14	21698478	-	WRN	chr8	31030511	+
intron-3CDS	ENST00000569482	ENST00000252288		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-intron	ENST00000569482	ENST00000447102		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-3CDS	ENST00000565683	ENST00000252288		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-intron	ENST00000565683	ENST00000447102		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-3CDS	ENST00000563622	ENST00000252288		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-intron	ENST00000563622	ENST00000447102		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-3CDS	ENST00000267978	ENST00000252288		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-intron	ENST00000267978	ENST00000447102		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-3CDS	ENST00000563539	ENST00000252288		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
intron-intron	ENST00000563539	ENST00000447102		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	MAN2C1	chr15	75647908	-	GAMT	chr19	1397498	-
In-frame	ENST00000555577	ENST00000369880		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	PI4K2A	chr10	99426877	+	AS3MT	chr10	104650301	+
In-frame	ENST00000370649	ENST00000369880		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	PI4K2A	chr10	99426877	+	AS3MT	chr10	104650301	+
In-frame	ENST00000370631	ENST00000369880		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	PI4K2A	chr10	99426877	+	AS3MT	chr10	104650301	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-5UTR	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-5UTR	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39795483	-
Frame-shit	ENST00000360768	ENST00000450873		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000360768	ENST00000284957		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000360768	ENST00000439720		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000360768	ENST00000437078		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
5CDS-3UTR	ENST00000360768	ENST00000484547		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000434382	ENST00000450873		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000434382	ENST00000284957		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000434382	ENST00000439720		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
Frame-shit	ENST00000434382	ENST00000437078		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
5CDS-3UTR	ENST00000434382	ENST00000484547		TCGA	LD	PRAD	TCGA-J9-A8CK-01A	VKORC1L1	chr7	65338552	+	RABGEF1	chr7	66270127	+
5UTR-intron	ENST00000441478	ENST00000422819		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	FIG4	chr6	110012704	+	CCDC162P	chr6	109548649	+
5CDS-intron	ENST00000230124	ENST00000422819		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	FIG4	chr6	110012704	+	CCDC162P	chr6	109548649	+
intron-intron	ENST00000368941	ENST00000422819		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	FIG4	chr6	110012704	+	CCDC162P	chr6	109548649	+
5CDS-5UTR	ENST00000309395	ENST00000322937		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MOB1B	chr4	71768267	+	AMBN	chr4	71458034	+
5CDS-5UTR	ENST00000309395	ENST00000449493		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MOB1B	chr4	71768267	+	AMBN	chr4	71458034	+
5UTR-5UTR	ENST00000396051	ENST00000322937		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MOB1B	chr4	71768267	+	AMBN	chr4	71458034	+
5UTR-5UTR	ENST00000396051	ENST00000449493		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MOB1B	chr4	71768267	+	AMBN	chr4	71458034	+
3UTR-5UTR	ENST00000511449	ENST00000322937		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MOB1B	chr4	71768267	+	AMBN	chr4	71458034	+
3UTR-5UTR	ENST00000511449	ENST00000449493		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MOB1B	chr4	71768267	+	AMBN	chr4	71458034	+
In-frame	ENST00000356056	ENST00000569795		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000356056	ENST00000413097		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000356056	ENST00000260376		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000356056	ENST00000287196		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
In-frame	ENST00000444904	ENST00000569795		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000444904	ENST00000413097		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000444904	ENST00000260376		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000444904	ENST00000287196		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
In-frame	ENST00000424560	ENST00000569795		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000424560	ENST00000413097		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000424560	ENST00000260376		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000424560	ENST00000287196		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
In-frame	ENST00000564571	ENST00000569795		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000564571	ENST00000413097		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000564571	ENST00000260376		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5CDS-5UTR	ENST00000564571	ENST00000287196		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-3CDS	ENST00000566885	ENST00000569795		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-5UTR	ENST00000566885	ENST00000413097		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-5UTR	ENST00000566885	ENST00000260376		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-5UTR	ENST00000566885	ENST00000287196		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-3CDS	ENST00000563542	ENST00000569795		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-5UTR	ENST00000563542	ENST00000413097		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-5UTR	ENST00000563542	ENST00000260376		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
5UTR-5UTR	ENST00000563542	ENST00000287196		TCGA	LD	PRAD	TCGA-J9-A8CL-01A	MYO9A	chr15	72320072	-	PARP6	chr15	72550473	-
In-frame	ENST00000380249	ENST00000454341		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000380249	ENST00000284694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000380249	ENST00000544758		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000380249	ENST00000356858		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-intron	ENST00000380249	ENST00000480379		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000380249	ENST00000368674		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000380249	ENST00000392694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000338382	ENST00000454341		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000338382	ENST00000284694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000338382	ENST00000544758		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000338382	ENST00000356858		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-intron	ENST00000338382	ENST00000480379		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000338382	ENST00000368674		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000338382	ENST00000392694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000605086	ENST00000454341		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000605086	ENST00000284694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
In-frame	ENST00000605086	ENST00000544758		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000605086	ENST00000356858		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-intron	ENST00000605086	ENST00000480379		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000605086	ENST00000368674		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5CDS-5UTR	ENST00000605086	ENST00000392694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-3CDS	ENST00000604828	ENST00000454341		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-3CDS	ENST00000604828	ENST00000284694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-3CDS	ENST00000604828	ENST00000544758		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-5UTR	ENST00000604828	ENST00000356858		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-intron	ENST00000604828	ENST00000480379		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-5UTR	ENST00000604828	ENST00000368674		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
intron-5UTR	ENST00000604828	ENST00000392694		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	FOCAD	chr9	20990373	+	C10orf90	chr10	128193654	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-J9-A8CM-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000373233	ENST00000462307		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
5CDS-intron	ENST00000373233	ENST00000491381		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
5CDS-intron	ENST00000373233	ENST00000342644		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
5CDS-intron	ENST00000373233	ENST00000372542		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
5CDS-intron	ENST00000373233	ENST00000372541		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
5CDS-intron	ENST00000373233	ENST00000344780		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000309279	ENST00000462307		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000309279	ENST00000491381		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000309279	ENST00000342644		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000309279	ENST00000372542		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000309279	ENST00000372541		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000309279	ENST00000344780		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000373222	ENST00000462307		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000373222	ENST00000491381		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000373222	ENST00000342644		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000373222	ENST00000372542		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000373222	ENST00000372541		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000373222	ENST00000344780		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000480022	ENST00000462307		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000480022	ENST00000491381		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000480022	ENST00000342644		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000480022	ENST00000372542		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000480022	ENST00000372541		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
intron-intron	ENST00000480022	ENST00000344780		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	CHD6	chr20	40043825	-	SNX21	chr20	44469072	+
In-frame	ENST00000400522	ENST00000372555		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	EFCAB8	chr20	31484333	+	TNNC2	chr20	44453473	-
5CDS-5UTR	ENST00000400522	ENST00000372557		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	EFCAB8	chr20	31484333	+	TNNC2	chr20	44453473	-
intron-3CDS	ENST00000524882	ENST00000372555		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	EFCAB8	chr20	31484333	+	TNNC2	chr20	44453473	-
intron-5UTR	ENST00000524882	ENST00000372557		TCGA	LD	PRAD	TCGA-J9-A8CN-01A	EFCAB8	chr20	31484333	+	TNNC2	chr20	44453473	-
In-frame	ENST00000380249	ENST00000402685		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
In-frame	ENST00000380249	ENST00000539469		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
In-frame	ENST00000380249	ENST00000298919		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
In-frame	ENST00000338382	ENST00000402685		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
In-frame	ENST00000338382	ENST00000539469		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
In-frame	ENST00000338382	ENST00000298919		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
intron-3CDS	ENST00000605086	ENST00000402685		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
intron-3CDS	ENST00000605086	ENST00000539469		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
intron-3CDS	ENST00000605086	ENST00000298919		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
intron-3CDS	ENST00000604828	ENST00000402685		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
intron-3CDS	ENST00000604828	ENST00000539469		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
intron-3CDS	ENST00000604828	ENST00000298919		TCGA	LD	PRAD	TCGA-J9-A8CP-01A	FOCAD	chr9	20789607	+	PDZRN4	chr12	41946458	+
3UTR-5UTR	ENST00000409454	ENST00000332149		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	HMGN2P46	chr15	45808090	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000409454	ENST00000398585		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	HMGN2P46	chr15	45808090	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000409454	ENST00000458356		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	HMGN2P46	chr15	45808090	+	TMPRSS2	chr21	42870116	-
3UTR-5UTR	ENST00000409454	ENST00000497881		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	HMGN2P46	chr15	45808090	+	TMPRSS2	chr21	42870116	-
intron-3CDS	ENST00000330339	ENST00000314103		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	RPS17	chr15	83207057	-	CHAF1B	chr21	37759896	+
intron-3UTR	ENST00000330339	ENST00000480486		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	RPS17	chr15	83207057	-	CHAF1B	chr21	37759896	+
intron-3CDS	ENST00000559187	ENST00000314103		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	RPS17	chr15	83207057	-	CHAF1B	chr21	37759896	+
intron-3UTR	ENST00000559187	ENST00000480486		TCGA	LD	PRAD	TCGA-KC-A4BN-01A	RPS17	chr15	83207057	-	CHAF1B	chr21	37759896	+
5CDS-intron	ENST00000409792	ENST00000372583		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
5CDS-5UTR	ENST00000409792	ENST00000372584		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
5CDS-intron	ENST00000409792	ENST00000247584		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
5CDS-intron	ENST00000409792	ENST00000429157		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
5CDS-intron	ENST00000409792	ENST00000460604		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
intron-intron	ENST00000492397	ENST00000372583		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
intron-5UTR	ENST00000492397	ENST00000372584		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
intron-intron	ENST00000492397	ENST00000247584		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
intron-intron	ENST00000492397	ENST00000429157		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
intron-intron	ENST00000492397	ENST00000460604		TCGA	LD	PRAD	TCGA-KC-A4BR-01A	SETD2	chr3	47205344	-	HIVEP3	chr1	42384195	-
5CDS-5UTR	ENST00000395146	ENST00000550418		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000395146	ENST00000553186		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000395146	ENST00000547372		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000395146	ENST00000422070		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000395146	ENST00000535565		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-3UTR	ENST00000395146	ENST00000547427		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-3UTR	ENST00000395146	ENST00000552089		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000395146	ENST00000547338		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000395146	ENST00000436368		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000395146	ENST00000311745		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000395146	ENST00000355637		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000395146	ENST00000340209		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000307808	ENST00000550418		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000307808	ENST00000553186		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000307808	ENST00000547372		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000307808	ENST00000422070		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000307808	ENST00000535565		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-3UTR	ENST00000307808	ENST00000547427		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-3UTR	ENST00000307808	ENST00000552089		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-5UTR	ENST00000307808	ENST00000547338		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000307808	ENST00000436368		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000307808	ENST00000311745		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000307808	ENST00000355637		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
5CDS-intron	ENST00000307808	ENST00000340209		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000544085	ENST00000550418		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000544085	ENST00000553186		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000544085	ENST00000547372		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000544085	ENST00000422070		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000544085	ENST00000535565		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-3UTR	ENST00000544085	ENST00000547427		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-3UTR	ENST00000544085	ENST00000552089		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000544085	ENST00000547338		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000544085	ENST00000436368		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000544085	ENST00000311745		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000544085	ENST00000355637		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000544085	ENST00000340209		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000511996	ENST00000550418		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000511996	ENST00000553186		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000511996	ENST00000547372		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000511996	ENST00000422070		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000511996	ENST00000535565		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-3UTR	ENST00000511996	ENST00000547427		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-3UTR	ENST00000511996	ENST00000552089		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-5UTR	ENST00000511996	ENST00000547338		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000511996	ENST00000436368		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000511996	ENST00000311745		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000511996	ENST00000355637		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-intron	ENST00000511996	ENST00000340209		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	AFF1	chr4	87968746	+	RBFOX1	chr16	7102058	+
intron-3CDS	ENST00000328735	ENST00000332149		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
intron-3CDS	ENST00000328735	ENST00000398585		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
intron-3CDS	ENST00000328735	ENST00000458356		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
intron-intron	ENST00000328735	ENST00000497881		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
Frame-shit	ENST00000330333	ENST00000332149		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
Frame-shit	ENST00000330333	ENST00000398585		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
Frame-shit	ENST00000330333	ENST00000458356		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
5CDS-intron	ENST00000330333	ENST00000497881		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
Frame-shit	ENST00000347667	ENST00000332149		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
Frame-shit	ENST00000347667	ENST00000398585		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
Frame-shit	ENST00000347667	ENST00000458356		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
5CDS-intron	ENST00000347667	ENST00000497881		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
3UTR-3CDS	ENST00000466122	ENST00000332149		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
3UTR-3CDS	ENST00000466122	ENST00000398585		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
3UTR-3CDS	ENST00000466122	ENST00000458356		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
3UTR-intron	ENST00000466122	ENST00000497881		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	BACE2	chr21	42629253	+	TMPRSS2	chr21	42848547	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-KC-A4BV-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000280527	ENST00000379242		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
Frame-shit	ENST00000280527	ENST00000389975		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
Frame-shit	ENST00000280527	ENST00000457137		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
5CDS-5UTR	ENST00000280527	ENST00000497382		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
5CDS-5UTR	ENST00000280527	ENST00000404084		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
5CDS-5UTR	ENST00000280527	ENST00000379241		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
5CDS-5UTR	ENST00000280527	ENST00000401530		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-3CDS	ENST00000473403	ENST00000379242		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-3CDS	ENST00000473403	ENST00000389975		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-3CDS	ENST00000473403	ENST00000457137		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-5UTR	ENST00000473403	ENST00000497382		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-5UTR	ENST00000473403	ENST00000404084		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-5UTR	ENST00000473403	ENST00000379241		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-5UTR	ENST00000473403	ENST00000401530		TCGA	LD	PRAD	TCGA-KC-A7F3-01A	CRIM1	chr2	36583766	+	VIT	chr2	36982064	+
intron-3CDS	ENST00000366553	ENST00000255559		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	CHML	chr1	241803184	-	SLC39A11	chr17	70944014	-
intron-3CDS	ENST00000366553	ENST00000542342		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	CHML	chr1	241803184	-	SLC39A11	chr17	70944014	-
intron-intron	ENST00000366553	ENST00000579988		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	CHML	chr1	241803184	-	SLC39A11	chr17	70944014	-
intron-intron	ENST00000366553	ENST00000579732		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	CHML	chr1	241803184	-	SLC39A11	chr17	70944014	-
intron-3CDS	ENST00000553443	ENST00000402703		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000553443	ENST00000361487		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-5UTR	ENST00000553443	ENST00000554201		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-intron	ENST00000553443	ENST00000557107		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000476979	ENST00000402703		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000476979	ENST00000361487		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-5UTR	ENST00000476979	ENST00000554201		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-intron	ENST00000476979	ENST00000557107		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000267368	ENST00000402703		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000267368	ENST00000361487		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-5UTR	ENST00000267368	ENST00000554201		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-intron	ENST00000267368	ENST00000557107		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000382320	ENST00000402703		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000382320	ENST00000361487		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-5UTR	ENST00000382320	ENST00000554201		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-intron	ENST00000382320	ENST00000557107		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000554555	ENST00000402703		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-3CDS	ENST00000554555	ENST00000361487		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-5UTR	ENST00000554555	ENST00000554201		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
intron-intron	ENST00000554555	ENST00000557107		TCGA	LD	PRAD	TCGA-KC-A7F5-01A	TTC6	chr14	38065213	+	PAX9	chr14	37132102	+
5UTR-3UTR	ENST00000209875	ENST00000546500		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
5UTR-intron	ENST00000209875	ENST00000340913		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
5UTR-intron	ENST00000209875	ENST00000330752		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
5UTR-intron	ENST00000209875	ENST00000547276		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
5UTR-3UTR	ENST00000209875	ENST00000551803		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-3UTR	ENST00000439541	ENST00000546500		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-intron	ENST00000439541	ENST00000340913		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-intron	ENST00000439541	ENST00000330752		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-intron	ENST00000439541	ENST00000547276		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-3UTR	ENST00000439541	ENST00000551803		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-3UTR	ENST00000550411	ENST00000546500		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-intron	ENST00000550411	ENST00000340913		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-intron	ENST00000550411	ENST00000330752		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-intron	ENST00000550411	ENST00000547276		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-3UTR	ENST00000550411	ENST00000551803		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CBX5	chr12	54673792	-	HNRNPA1	chr12	54680446	+
intron-3CDS	ENST00000430627	ENST00000378364		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
intron-3CDS	ENST00000430627	ENST00000426324		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
intron-3CDS	ENST00000430627	ENST00000563655		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
intron-3CDS	ENST00000447079	ENST00000378364		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
intron-3CDS	ENST00000447079	ENST00000426324		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
intron-3CDS	ENST00000447079	ENST00000563655		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
3UTR-3CDS	ENST00000559545	ENST00000378364		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
3UTR-3CDS	ENST00000559545	ENST00000426324		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
3UTR-3CDS	ENST00000559545	ENST00000563655		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	CDK12	chr17	37713311	+	APRT	chr16	88876556	-
Frame-shit	ENST00000273221	ENST00000366510		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	IQSEC1	chr3	12953129	-	SCCPDH	chr1	246903474	+
intron-3CDS	ENST00000473088	ENST00000366510		TCGA	LD	PRAD	TCGA-KC-A7F6-01A	IQSEC1	chr3	12953129	-	SCCPDH	chr1	246903474	+
Frame-shit	ENST00000298784	ENST00000280333		TCGA	LD	PRAD	TCGA-KC-A7FA-01A	FAM35A	chr10	88930731	+	DOCK1	chr10	129201319	+
5CDS-intron	ENST00000298784	ENST00000484400		TCGA	LD	PRAD	TCGA-KC-A7FA-01A	FAM35A	chr10	88930731	+	DOCK1	chr10	129201319	+
Frame-shit	ENST00000298786	ENST00000280333		TCGA	LD	PRAD	TCGA-KC-A7FA-01A	FAM35A	chr10	88930731	+	DOCK1	chr10	129201319	+
5CDS-intron	ENST00000298786	ENST00000484400		TCGA	LD	PRAD	TCGA-KC-A7FA-01A	FAM35A	chr10	88930731	+	DOCK1	chr10	129201319	+
In-frame	ENST00000307301	ENST00000412468		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	MRPL39	chr21	26972111	-	SLC35G6	chr17	7385307	+
In-frame	ENST00000352957	ENST00000412468		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	MRPL39	chr21	26972111	-	SLC35G6	chr17	7385307	+
5UTR-3CDS	ENST00000332149	ENST00000319349		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000332149	ENST00000393664		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000538265		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545954		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000545089		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000332149	ENST00000591713		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000332149	ENST00000586826		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000319349		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000398585	ENST00000393664		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000538265		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545954		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000545089		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000398585	ENST00000591713		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000398585	ENST00000586826		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000319349		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-3CDS	ENST00000458356	ENST00000393664		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000538265		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545954		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000545089		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-5UTR	ENST00000458356	ENST00000591713		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
intron-intron	ENST00000458356	ENST00000586826		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000319349		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-3CDS	ENST00000497881	ENST00000393664		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000538265		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545954		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000545089		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-5UTR	ENST00000497881	ENST00000591713		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5UTR-intron	ENST00000497881	ENST00000586826		TCGA	LD	PRAD	TCGA-KC-A7FD-01A	TMPRSS2	chr21	42880008	-	ETV4	chr17	41622735	-
5CDS-5UTR	ENST00000409261	ENST00000410036		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000409261	ENST00000309451		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000409213	ENST00000410036		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000409213	ENST00000309451		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000405974	ENST00000410036		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000405974	ENST00000309451		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000317721	ENST00000410036		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
5CDS-5UTR	ENST00000317721	ENST00000309451		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
intron-5UTR	ENST00000473859	ENST00000410036		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
intron-5UTR	ENST00000473859	ENST00000309451		TCGA	LD	PRAD	TCGA-KK-A59X-01A	NCKAP5	chr2	134060609	-	MZT2A	chr2	132241791	-
intron-3CDS	ENST00000454872	ENST00000273654		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	NAALADL2	chr3	174158822	+	CCDC39	chr3	180397587	-
intron-intron	ENST00000454872	ENST00000442201		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	NAALADL2	chr3	174158822	+	CCDC39	chr3	180397587	-
intron-intron	ENST00000454872	ENST00000485055		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	NAALADL2	chr3	174158822	+	CCDC39	chr3	180397587	-
intron-3CDS	ENST00000473253	ENST00000273654		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	NAALADL2	chr3	174158822	+	CCDC39	chr3	180397587	-
intron-intron	ENST00000473253	ENST00000442201		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	NAALADL2	chr3	174158822	+	CCDC39	chr3	180397587	-
intron-intron	ENST00000473253	ENST00000485055		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	NAALADL2	chr3	174158822	+	CCDC39	chr3	180397587	-
Frame-shit	ENST00000458591	ENST00000315266		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000458591	ENST00000478722		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000458591	ENST00000459628		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000458591	ENST00000543237		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000458591	ENST00000305960		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
5CDS-intron	ENST00000458591	ENST00000544752		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000421551	ENST00000315266		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000421551	ENST00000478722		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000421551	ENST00000459628		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000421551	ENST00000543237		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000421551	ENST00000305960		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
5CDS-intron	ENST00000421551	ENST00000544752		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000544052	ENST00000315266		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000544052	ENST00000478722		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000544052	ENST00000459628		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000544052	ENST00000543237		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000544052	ENST00000305960		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
5CDS-intron	ENST00000544052	ENST00000544752		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000541123	ENST00000315266		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000541123	ENST00000478722		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000541123	ENST00000459628		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000541123	ENST00000543237		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000541123	ENST00000305960		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
5CDS-intron	ENST00000541123	ENST00000544752		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000396629	ENST00000315266		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000396629	ENST00000478722		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000396629	ENST00000459628		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000396629	ENST00000543237		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000396629	ENST00000305960		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
5CDS-intron	ENST00000396629	ENST00000544752		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554486	ENST00000315266		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554486	ENST00000478722		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554486	ENST00000459628		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554486	ENST00000543237		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
intron-3CDS	ENST00000554486	ENST00000305960		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
intron-intron	ENST00000554486	ENST00000544752		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	SCFD1	chr14	31142553	+	GPHN	chr14	67147825	+
Frame-shit	ENST00000392314	ENST00000332149		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000392314	ENST00000398585		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000392314	ENST00000458356		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
5CDS-intron	ENST00000392314	ENST00000497881		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000272771	ENST00000332149		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000272771	ENST00000398585		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000272771	ENST00000458356		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
5CDS-intron	ENST00000272771	ENST00000497881		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
intron-3CDS	ENST00000487771	ENST00000332149		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
intron-3CDS	ENST00000487771	ENST00000398585		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
intron-3CDS	ENST00000487771	ENST00000458356		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
intron-intron	ENST00000487771	ENST00000497881		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000409056	ENST00000332149		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000409056	ENST00000398585		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000409056	ENST00000458356		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
5CDS-intron	ENST00000409056	ENST00000497881		TCGA	LD	PRAD	TCGA-KK-A59Y-01A	TMEFF2	chr2	193049080	-	TMPRSS2	chr21	42851209	-
Frame-shit	ENST00000331351	ENST00000005284		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	HS3ST4	chr16	25704472	+	CACNG3	chr16	24358055	+
intron-3CDS	ENST00000475436	ENST00000005284		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	HS3ST4	chr16	25704472	+	CACNG3	chr16	24358055	+
5UTR-3CDS	ENST00000426496	ENST00000367760		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000426496	ENST00000239461		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000426496	ENST00000497230		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-intron	ENST00000426496	ENST00000476867		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000392078	ENST00000367760		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000392078	ENST00000239461		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000392078	ENST00000497230		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-intron	ENST00000392078	ENST00000476867		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
3UTR-3CDS	ENST00000476522	ENST00000367760		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
3UTR-3CDS	ENST00000476522	ENST00000239461		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
3UTR-3CDS	ENST00000476522	ENST00000497230		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
3UTR-intron	ENST00000476522	ENST00000476867		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000367742	ENST00000367760		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000367742	ENST00000239461		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000367742	ENST00000497230		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-intron	ENST00000367742	ENST00000476867		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000338920	ENST00000367760		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000338920	ENST00000239461		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-3CDS	ENST00000338920	ENST00000497230		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
5UTR-intron	ENST00000338920	ENST00000476867		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	PRRC2C	chr1	171454874	+	PRRX1	chr1	170688867	+
Frame-shit	ENST00000343529	ENST00000297431		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
In-frame	ENST00000343529	ENST00000545943		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000343529	ENST00000447452		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000343529	ENST00000485726		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
Frame-shit	ENST00000428762	ENST00000297431		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
In-frame	ENST00000428762	ENST00000545943		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000428762	ENST00000447452		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000428762	ENST00000485726		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
Frame-shit	ENST00000424685	ENST00000297431		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
In-frame	ENST00000424685	ENST00000545943		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000424685	ENST00000447452		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000424685	ENST00000485726		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
intron-3CDS	ENST00000473945	ENST00000297431		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
intron-3CDS	ENST00000473945	ENST00000545943		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
intron-intron	ENST00000473945	ENST00000447452		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
intron-intron	ENST00000473945	ENST00000485726		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RELN	chr7	103270387	-	ORC5	chr7	103767340	-
5CDS-intron	ENST00000484532	ENST00000465508		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000484532	ENST00000349363		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000484532	ENST00000377577		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000484532	ENST00000294401		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000484532	ENST00000542246		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000484532	ENST00000377573		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000234875	ENST00000465508		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000234875	ENST00000349363		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000234875	ENST00000377577		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000234875	ENST00000294401		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000234875	ENST00000542246		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000234875	ENST00000377573		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000497965	ENST00000465508		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000497965	ENST00000349363		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000497965	ENST00000377577		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000497965	ENST00000294401		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000497965	ENST00000542246		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000497965	ENST00000377573		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	RPL22	chr1	6257712	-	DNAJC11	chr1	6714099	-
Frame-shit	ENST00000361368	ENST00000366816		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
Frame-shit	ENST00000361368	ENST00000366815		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
5CDS-intron	ENST00000361368	ENST00000366814		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
5CDS-intron	ENST00000361368	ENST00000366813		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
Frame-shit	ENST00000361125	ENST00000366816		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
Frame-shit	ENST00000361125	ENST00000366815		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
5CDS-intron	ENST00000361125	ENST00000366814		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
5CDS-intron	ENST00000361125	ENST00000366813		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
intron-3CDS	ENST00000480055	ENST00000366816		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
intron-3CDS	ENST00000480055	ENST00000366815		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
intron-intron	ENST00000480055	ENST00000366814		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
intron-intron	ENST00000480055	ENST00000366813		TCGA	LD	PRAD	TCGA-KK-A5A1-01A	SMURF1	chr7	98741349	-	H3F3A	chr1	226259052	+
5CDS-intron	ENST00000346169	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000346169	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000414031	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000414031	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000392537	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000392537	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000382330	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000382330	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000350481	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000350481	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000352767	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000352767	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000427845	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000427845	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000342981	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000342981	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000319274	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000319274	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000424196	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000424196	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000411531	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000411531	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000441154	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000441154	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000434061	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000434061	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000435046	ENST00000413482		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
5CDS-intron	ENST00000435046	ENST00000272847		TCGA	LD	PRAD	TCGA-KK-A6DY-01A	EIF4G1	chr3	184046778	+	PTH2R	chr2	209688919	+
3UTR-3UTR	ENST00000491455	ENST00000515137		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
3UTR-3UTR	ENST00000491455	ENST00000265498		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
3UTR-intron	ENST00000491455	ENST00000506797		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000415093	ENST00000515137		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000415093	ENST00000265498		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000415093	ENST00000506797		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000366957	ENST00000515137		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5CDS-3UTR	ENST00000366957	ENST00000265498		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5CDS-intron	ENST00000366957	ENST00000506797		TCGA	LD	PRAD	TCGA-KK-A6E0-01A	SMYD2	chr1	214454770	+	MGST2	chr4	140616351	+
5UTR-3CDS	ENST00000360214	ENST00000333781		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360214	ENST00000541890		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360214	ENST00000398753		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360214	ENST00000380708		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3UTR	ENST00000360214	ENST00000466787		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360938	ENST00000333781		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360938	ENST00000541890		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360938	ENST00000398753		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3CDS	ENST00000360938	ENST00000380708		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
5UTR-3UTR	ENST00000360938	ENST00000466787		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	ETS2	chr21	40178044	+	WRB	chr21	40765092	+
In-frame	ENST00000300255	ENST00000290354		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	EVA1C	chr21	33825816	+	CBR3	chr21	37518374	+
In-frame	ENST00000401402	ENST00000290354		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	EVA1C	chr21	33825816	+	CBR3	chr21	37518374	+
In-frame	ENST00000382699	ENST00000290354		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	EVA1C	chr21	33825816	+	CBR3	chr21	37518374	+
intron-3CDS	ENST00000485488	ENST00000290354		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	EVA1C	chr21	33825816	+	CBR3	chr21	37518374	+
intron-intron	ENST00000529639	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529639	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529639	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529639	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529639	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000531743	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000531743	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000531743	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000531743	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000531743	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000525297	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000525297	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000525297	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000525297	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000525297	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000527548	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000527548	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000527548	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000527548	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000527548	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000279259	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000279259	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000279259	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000279259	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000279259	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529259	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529259	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529259	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529259	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000529259	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000434372	ENST00000323848		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000434372	ENST00000447431		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000434372	ENST00000374389		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000434372	ENST00000479034		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-intron	ENST00000434372	ENST00000537199		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	FAU	chr11	64888194	-	SRRM1	chr1	24974082	+
intron-3CDS	ENST00000340635	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000340635	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000340635	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000340635	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000340635	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000340635	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000340635	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000340635	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000340635	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000340635	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000340635	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000360047	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000360047	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000360047	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000360047	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000360047	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000360047	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000360047	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000360047	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000360047	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000360047	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000360047	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000507116	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000507116	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000507116	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000507116	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000507116	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000507116	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000507116	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000507116	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000507116	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000507116	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000507116	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000502484	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000502484	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000502484	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000502484	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000502484	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000502484	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000502484	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000502484	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000502484	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000502484	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000502484	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000546160	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000546160	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000546160	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000546160	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000546160	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
Frame-shit	ENST00000546160	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000546160	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000546160	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000546160	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000546160	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000546160	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000502575	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000502575	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000502575	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000502575	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000502575	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000502575	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000502575	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000502575	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000502575	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000502575	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000502575	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000358923	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000358923	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000358923	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000358923	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000358923	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000358923	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000358923	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000358923	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000358923	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000358923	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000358923	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503258	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503258	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503258	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503258	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503258	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503258	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503258	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503258	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503258	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503258	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503258	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000405755	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000405755	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000405755	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000405755	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000405755	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000405755	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000405755	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000405755	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000405755	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000405755	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000405755	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000317118	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000317118	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000317118	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000317118	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000317118	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000317118	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000317118	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000317118	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000317118	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000317118	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000317118	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503947	ENST00000471595		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503947	ENST00000478469		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503947	ENST00000251654		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503947	ENST00000483687		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503947	ENST00000490504		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-3CDS	ENST00000503947	ENST00000466072		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503947	ENST00000482086		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503947	ENST00000468777		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503947	ENST00000462637		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503947	ENST00000469217		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
intron-intron	ENST00000503947	ENST00000474833		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PDE4D	chr5	59284315	-	PCCB	chr3	135974698	+
5CDS-intron	ENST00000323646	ENST00000384756		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000364799		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000384693		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000383926		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000516331		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000384706		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000363981		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000384147		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000323646	ENST00000365607		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000384756		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000364799		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000384693		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000383926		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000516331		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000384706		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000363981		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000384147		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5CDS-intron	ENST00000415826	ENST00000365607		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000384756		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000364799		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000384693		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000383926		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000516331		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000384706		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000363981		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000384147		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
5UTR-intron	ENST00000394613	ENST00000365607		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PLA2G16	chr11	63365533	-	SNHG1	chr11	62621305	-
In-frame	ENST00000356948	ENST00000348165		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
5CDS-intron	ENST00000356948	ENST00000389103		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
intron-3CDS	ENST00000350092	ENST00000348165		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
intron-intron	ENST00000350092	ENST00000389103		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
In-frame	ENST00000349038	ENST00000348165		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
5CDS-intron	ENST00000349038	ENST00000389103		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
In-frame	ENST00000394601	ENST00000348165		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
5CDS-intron	ENST00000394601	ENST00000389103		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	PTBP1	chr19	804438	+	UBE3C	chr7	157009561	+
intron-3CDS	ENST00000323848	ENST00000529639		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000323848	ENST00000531743		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000323848	ENST00000525297		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000323848	ENST00000527548		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000323848	ENST00000279259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3UTR	ENST00000323848	ENST00000529259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-intron	ENST00000323848	ENST00000434372		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000447431	ENST00000529639		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000447431	ENST00000531743		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000447431	ENST00000525297		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000447431	ENST00000527548		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000447431	ENST00000279259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3UTR	ENST00000447431	ENST00000529259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-intron	ENST00000447431	ENST00000434372		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000374389	ENST00000529639		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000374389	ENST00000531743		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000374389	ENST00000525297		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000374389	ENST00000527548		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000374389	ENST00000279259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3UTR	ENST00000374389	ENST00000529259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-intron	ENST00000374389	ENST00000434372		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000479034	ENST00000529639		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000479034	ENST00000531743		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000479034	ENST00000525297		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000479034	ENST00000527548		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000479034	ENST00000279259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3UTR	ENST00000479034	ENST00000529259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-intron	ENST00000479034	ENST00000434372		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000537199	ENST00000529639		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000537199	ENST00000531743		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000537199	ENST00000525297		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000537199	ENST00000527548		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3CDS	ENST00000537199	ENST00000279259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-3UTR	ENST00000537199	ENST00000529259		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-intron	ENST00000537199	ENST00000434372		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	SRRM1	chr1	24974293	+	FAU	chr11	64888246	-
intron-5UTR	ENST00000407228	ENST00000568524		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	TOX3	chr16	52580549	-	C16orf97	chr16	52092340	-
intron-5UTR	ENST00000407228	ENST00000562818		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	TOX3	chr16	52580549	-	C16orf97	chr16	52092340	-
intron-5UTR	ENST00000407228	ENST00000566628		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	TOX3	chr16	52580549	-	C16orf97	chr16	52092340	-
5CDS-5UTR	ENST00000219746	ENST00000568524		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	TOX3	chr16	52580549	-	C16orf97	chr16	52092340	-
5CDS-5UTR	ENST00000219746	ENST00000562818		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	TOX3	chr16	52580549	-	C16orf97	chr16	52092340	-
5CDS-5UTR	ENST00000219746	ENST00000566628		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	TOX3	chr16	52580549	-	C16orf97	chr16	52092340	-
Frame-shit	ENST00000397933	ENST00000477522		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000397933	ENST00000492382		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000397933	ENST00000360356		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000397933	ENST00000471785		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000397933	ENST00000462315		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000473835	ENST00000477522		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000473835	ENST00000492382		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000473835	ENST00000360356		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000473835	ENST00000471785		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000473835	ENST00000462315		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000493598	ENST00000477522		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000493598	ENST00000492382		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000493598	ENST00000360356		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000493598	ENST00000471785		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
Frame-shit	ENST00000493598	ENST00000462315		TCGA	LD	PRAD	TCGA-KK-A6E1-01A	U2SURP	chr3	142757802	+	PARP9	chr3	122255920	-
In-frame	ENST00000264012	ENST00000336278		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
5CDS-intron	ENST00000264012	ENST00000528525		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
In-frame	ENST00000429102	ENST00000336278		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
5CDS-intron	ENST00000429102	ENST00000528525		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
intron-3CDS	ENST00000581171	ENST00000336278		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
intron-intron	ENST00000581171	ENST00000528525		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
intron-3CDS	ENST00000569117	ENST00000336278		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
intron-intron	ENST00000569117	ENST00000528525		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	CDH3	chr16	68679653	+	SNTB2	chr16	69333493	+
Frame-shit	ENST00000396049	ENST00000272444		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5CDS-5UTR	ENST00000396049	ENST00000480948		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5CDS-5UTR	ENST00000396049	ENST00000443070		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5CDS-5UTR	ENST00000396049	ENST00000377706		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5UTR-3CDS	ENST00000497054	ENST00000272444		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5UTR-5UTR	ENST00000497054	ENST00000480948		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5UTR-5UTR	ENST00000497054	ENST00000443070		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
5UTR-5UTR	ENST00000497054	ENST00000377706		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
intron-3CDS	ENST00000409969	ENST00000272444		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
intron-5UTR	ENST00000409969	ENST00000480948		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
intron-5UTR	ENST00000409969	ENST00000443070		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
intron-5UTR	ENST00000409969	ENST00000377706		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	MOB1A	chr2	74405788	-	DUSP11	chr2	74005503	-
intron-3CDS	ENST00000394121	ENST00000209728		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	THRA	chr17	38219345	+	CDC6	chr17	38457080	+
5UTR-3CDS	ENST00000264637	ENST00000209728		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	THRA	chr17	38219345	+	CDC6	chr17	38457080	+
5UTR-3CDS	ENST00000584985	ENST00000209728		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	THRA	chr17	38219345	+	CDC6	chr17	38457080	+
5UTR-3CDS	ENST00000450525	ENST00000209728		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	THRA	chr17	38219345	+	CDC6	chr17	38457080	+
intron-3CDS	ENST00000546243	ENST00000209728		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	THRA	chr17	38219345	+	CDC6	chr17	38457080	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A6E2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-3UTR	ENST00000337907	ENST00000461361		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
5CDS-3UTR	ENST00000337907	ENST00000265564		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
intron-3UTR	ENST00000377464	ENST00000461361		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
intron-3UTR	ENST00000377464	ENST00000265564		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
5CDS-3UTR	ENST00000400907	ENST00000461361		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
5CDS-3UTR	ENST00000400907	ENST00000265564		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
5CDS-3UTR	ENST00000400908	ENST00000461361		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
5CDS-3UTR	ENST00000400908	ENST00000265564		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
intron-3UTR	ENST00000476556	ENST00000461361		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
intron-3UTR	ENST00000476556	ENST00000265564		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
intron-3UTR	ENST00000460659	ENST00000461361		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
intron-3UTR	ENST00000460659	ENST00000265564		TCGA	LD	PRAD	TCGA-KK-A6E3-01A	RERE	chr1	8716032	-	EXOSC7	chr3	45030632	+
In-frame	ENST00000315266	ENST00000487861		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000315266	ENST00000471583		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000315266	ENST00000487270		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000315266	ENST00000488612		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000315266	ENST00000390683		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
5CDS-intron	ENST00000315266	ENST00000469165		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000478722	ENST00000487861		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000478722	ENST00000471583		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000478722	ENST00000487270		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000478722	ENST00000488612		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000478722	ENST00000390683		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
5CDS-intron	ENST00000478722	ENST00000469165		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000459628	ENST00000487861		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000459628	ENST00000471583		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000459628	ENST00000487270		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000459628	ENST00000488612		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000459628	ENST00000390683		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
5CDS-intron	ENST00000459628	ENST00000469165		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000543237	ENST00000487861		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000543237	ENST00000471583		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000543237	ENST00000487270		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000543237	ENST00000488612		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000543237	ENST00000390683		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
5CDS-intron	ENST00000543237	ENST00000469165		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000305960	ENST00000487861		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000305960	ENST00000471583		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000305960	ENST00000487270		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000305960	ENST00000488612		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
In-frame	ENST00000305960	ENST00000390683		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
5CDS-intron	ENST00000305960	ENST00000469165		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
intron-3CDS	ENST00000544752	ENST00000487861		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
intron-3CDS	ENST00000544752	ENST00000471583		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
intron-3CDS	ENST00000544752	ENST00000487270		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
intron-3CDS	ENST00000544752	ENST00000488612		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
intron-3CDS	ENST00000544752	ENST00000390683		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
intron-intron	ENST00000544752	ENST00000469165		TCGA	LD	PRAD	TCGA-KK-A6E4-01A	GPHN	chr14	67243239	+	RAD51B	chr14	68301797	+
5CDS-intron	ENST00000296084	ENST00000477496		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000460856		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000240874		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000360013		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000393496		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000291478		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000428018		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000459915		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000296084	ENST00000462213		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000477496		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000460856		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000240874		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000360013		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000393496		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000291478		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000428018		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000459915		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
5CDS-intron	ENST00000427044	ENST00000462213		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000477496		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000460856		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000240874		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000360013		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000393496		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000291478		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000428018		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000459915		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000484106	ENST00000462213		TCGA	LD	PRAD	TCGA-KK-A6E5-01A	RYK	chr3	133907681	-	KALRN	chr3	124149503	+
intron-intron	ENST00000398907	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398907	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398907	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398907	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398905	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398905	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398905	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000398905	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000288319	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000288319	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000288319	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000288319	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000398897	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000398897	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000398897	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000398897	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398911	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398911	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398911	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398911	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398910	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398910	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398910	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398910	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000417133	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000417133	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000417133	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000417133	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000442448	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000442448	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000442448	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000442448	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000453032	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000453032	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000453032	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000453032	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398919	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398919	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398919	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-intron	ENST00000398919	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000429727	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000429727	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000429727	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
intron-intron	ENST00000429727	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000485493	ENST00000393651		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000485493	ENST00000357311		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000485493	ENST00000489828		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5UTR-intron	ENST00000485493	ENST00000493638		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ERG	chr21	39947586	-	SRPK2	chr7	105039700	-
5CDS-5UTR	ENST00000399799	ENST00000319592		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ROCK1	chr18	18650493	-	RBM47	chr4	40546523	-
5CDS-intron	ENST00000399799	ENST00000381793		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ROCK1	chr18	18650493	-	RBM47	chr4	40546523	-
5CDS-intron	ENST00000399799	ENST00000381795		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ROCK1	chr18	18650493	-	RBM47	chr4	40546523	-
5CDS-5UTR	ENST00000399799	ENST00000295971		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ROCK1	chr18	18650493	-	RBM47	chr4	40546523	-
5CDS-5UTR	ENST00000399799	ENST00000514014		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ROCK1	chr18	18650493	-	RBM47	chr4	40546523	-
5CDS-intron	ENST00000399799	ENST00000515809		TCGA	LD	PRAD	TCGA-KK-A6E6-01A	ROCK1	chr18	18650493	-	RBM47	chr4	40546523	-
intron-3CDS	ENST00000264434	ENST00000260641		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000264434	ENST00000476840		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000264434	ENST00000542850		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000264434	ENST00000377982		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-3CDS	ENST00000420306	ENST00000260641		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000420306	ENST00000476840		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000420306	ENST00000542850		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000420306	ENST00000377982		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-3CDS	ENST00000470096	ENST00000260641		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000470096	ENST00000476840		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000470096	ENST00000542850		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
intron-intron	ENST00000470096	ENST00000377982		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	C2orf42	chr2	70463211	-	ACTR2	chr2	65478161	+
Frame-shit	ENST00000370081	ENST00000215794		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	COX7A2	chr6	75953433	-	USP18	chr22	18659539	+
Frame-shit	ENST00000230459	ENST00000215794		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	COX7A2	chr6	75953433	-	USP18	chr22	18659539	+
Frame-shit	ENST00000370089	ENST00000215794		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	COX7A2	chr6	75953433	-	USP18	chr22	18659539	+
Frame-shit	ENST00000509698	ENST00000215794		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	COX7A2	chr6	75953433	-	USP18	chr22	18659539	+
Frame-shit	ENST00000460985	ENST00000215794		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	COX7A2	chr6	75953433	-	USP18	chr22	18659539	+
Frame-shit	ENST00000472311	ENST00000215794		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	COX7A2	chr6	75953433	-	USP18	chr22	18659539	+
5UTR-3CDS	ENST00000361417	ENST00000361756		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
5UTR-3CDS	ENST00000361417	ENST00000533380		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
5UTR-3CDS	ENST00000361417	ENST00000393713		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
5UTR-3UTR	ENST00000361417	ENST00000490867		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
5UTR-5UTR	ENST00000361417	ENST00000545854		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
5UTR-5UTR	ENST00000361417	ENST00000530137		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000356063	ENST00000361756		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000356063	ENST00000533380		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000356063	ENST00000393713		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000356063	ENST00000490867		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000356063	ENST00000545854		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000356063	ENST00000530137		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000534672	ENST00000361756		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000534672	ENST00000533380		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000534672	ENST00000393713		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000534672	ENST00000490867		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000534672	ENST00000545854		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000534672	ENST00000530137		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000527898	ENST00000361756		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000527898	ENST00000533380		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000527898	ENST00000393713		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000527898	ENST00000490867		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000527898	ENST00000545854		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000527898	ENST00000530137		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000524713	ENST00000361756		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000524713	ENST00000533380		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3CDS	ENST00000524713	ENST00000393713		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-3UTR	ENST00000524713	ENST00000490867		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000524713	ENST00000545854		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
intron-5UTR	ENST00000524713	ENST00000530137		TCGA	LD	PRAD	TCGA-KK-A7AP-01A	PHLDB1	chr11	118484165	+	RNF121	chr11	71671796	+
5UTR-3CDS	ENST00000281772	ENST00000264111		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000281772	ENST00000397081		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000281772	ENST00000409036		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000281772	ENST00000397087		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000281772	ENST00000538974		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000281772	ENST00000540783		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000281772	ENST00000539331		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3UTR	ENST00000281772	ENST00000473043		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-intron	ENST00000281772	ENST00000535187		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000418791	ENST00000264111		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000418791	ENST00000397081		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000418791	ENST00000409036		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000418791	ENST00000397087		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000418791	ENST00000538974		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000418791	ENST00000540783		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000418791	ENST00000539331		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3UTR	ENST00000418791	ENST00000473043		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-intron	ENST00000418791	ENST00000535187		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000452086	ENST00000264111		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000452086	ENST00000397081		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000452086	ENST00000409036		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3CDS	ENST00000452086	ENST00000397087		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000452086	ENST00000538974		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000452086	ENST00000540783		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-5UTR	ENST00000452086	ENST00000539331		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-3UTR	ENST00000452086	ENST00000473043		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
5UTR-intron	ENST00000452086	ENST00000535187		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000429908	ENST00000264111		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000429908	ENST00000397081		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000429908	ENST00000409036		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000429908	ENST00000397087		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-5UTR	ENST00000429908	ENST00000538974		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-5UTR	ENST00000429908	ENST00000540783		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-5UTR	ENST00000429908	ENST00000539331		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3UTR	ENST00000429908	ENST00000473043		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-intron	ENST00000429908	ENST00000535187		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000457374	ENST00000264111		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000457374	ENST00000397081		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000457374	ENST00000409036		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000457374	ENST00000397087		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-5UTR	ENST00000457374	ENST00000538974		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-5UTR	ENST00000457374	ENST00000540783		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-5UTR	ENST00000457374	ENST00000539331		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3UTR	ENST00000457374	ENST00000473043		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-intron	ENST00000457374	ENST00000535187		TCGA	LD	PRAD	TCGA-KK-A7AQ-01A	KANSL1L	chr2	211035873	-	RAPGEF4	chr2	173782530	+
intron-3CDS	ENST00000539805	ENST00000217246		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-3CDS	ENST00000539805	ENST00000310348		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-3UTR	ENST00000539805	ENST00000464883		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000539805	ENST00000402914		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000539805	ENST00000378058		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000539805	ENST00000407045		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5UTR-3CDS	ENST00000480436	ENST00000217246		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5UTR-3CDS	ENST00000480436	ENST00000310348		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5UTR-3UTR	ENST00000480436	ENST00000464883		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5UTR-intron	ENST00000480436	ENST00000402914		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5UTR-intron	ENST00000480436	ENST00000378058		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5UTR-intron	ENST00000480436	ENST00000407045		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
Frame-shit	ENST00000337743	ENST00000217246		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
Frame-shit	ENST00000337743	ENST00000310348		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5CDS-3UTR	ENST00000337743	ENST00000464883		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5CDS-intron	ENST00000337743	ENST00000402914		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5CDS-intron	ENST00000337743	ENST00000378058		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
5CDS-intron	ENST00000337743	ENST00000407045		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-3CDS	ENST00000544472	ENST00000217246		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-3CDS	ENST00000544472	ENST00000310348		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-3UTR	ENST00000544472	ENST00000464883		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000544472	ENST00000402914		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000544472	ENST00000378058		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
intron-intron	ENST00000544472	ENST00000407045		TCGA	LD	PRAD	TCGA-KK-A7AU-01A	TASP1	chr20	13561544	-	MACROD2	chr20	14665489	+
Frame-shit	ENST00000319172	ENST00000273390		TCGA	LD	PRAD	TCGA-KK-A7AV-01A	TMEM39A	chr3	119171294	-	MAATS1	chr3	119434409	+
Frame-shit	ENST00000319172	ENST00000463700		TCGA	LD	PRAD	TCGA-KK-A7AV-01A	TMEM39A	chr3	119171294	-	MAATS1	chr3	119434409	+
5CDS-intron	ENST00000319172	ENST00000472117		TCGA	LD	PRAD	TCGA-KK-A7AV-01A	TMEM39A	chr3	119171294	-	MAATS1	chr3	119434409	+
intron-3CDS	ENST00000486159	ENST00000273390		TCGA	LD	PRAD	TCGA-KK-A7AV-01A	TMEM39A	chr3	119171294	-	MAATS1	chr3	119434409	+
intron-3CDS	ENST00000486159	ENST00000463700		TCGA	LD	PRAD	TCGA-KK-A7AV-01A	TMEM39A	chr3	119171294	-	MAATS1	chr3	119434409	+
intron-intron	ENST00000486159	ENST00000472117		TCGA	LD	PRAD	TCGA-KK-A7AV-01A	TMEM39A	chr3	119171294	-	MAATS1	chr3	119434409	+
Frame-shit	ENST00000406337	ENST00000389327		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000406337	ENST00000389328		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
Frame-shit	ENST00000406337	ENST00000438773		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000406337	ENST00000522504		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000265713	ENST00000389327		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000265713	ENST00000389328		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000265713	ENST00000438773		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000265713	ENST00000522504		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000396930	ENST00000389327		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000396930	ENST00000389328		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000396930	ENST00000438773		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000396930	ENST00000522504		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000485568	ENST00000389327		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000485568	ENST00000389328		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
In-frame	ENST00000485568	ENST00000438773		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
5CDS-intron	ENST00000485568	ENST00000522504		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	KAT6A	chr8	41905896	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000379066	ENST00000234170		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	PRKD3	chr2	37551824	-	CEBPZ	chr2	37430151	-
intron-3CDS	ENST00000234179	ENST00000234170		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	PRKD3	chr2	37551824	-	CEBPZ	chr2	37430151	-
intron-3CDS	ENST00000477132	ENST00000234170		TCGA	LD	PRAD	TCGA-KK-A7AW-01A	PRKD3	chr2	37551824	-	CEBPZ	chr2	37430151	-
Frame-shit	ENST00000538789	ENST00000324695		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
Frame-shit	ENST00000538789	ENST00000433712		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
5CDS-intron	ENST00000538789	ENST00000355722		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
5CDS-intron	ENST00000538789	ENST00000409625		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
5CDS-intron	ENST00000538789	ENST00000466594		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
intron-3CDS	ENST00000481602	ENST00000324695		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
intron-3CDS	ENST00000481602	ENST00000433712		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
intron-intron	ENST00000481602	ENST00000355722		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
intron-intron	ENST00000481602	ENST00000409625		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
intron-intron	ENST00000481602	ENST00000466594		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
Frame-shit	ENST00000374298	ENST00000324695		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
Frame-shit	ENST00000374298	ENST00000433712		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
5CDS-intron	ENST00000374298	ENST00000355722		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
5CDS-intron	ENST00000374298	ENST00000409625		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
5CDS-intron	ENST00000374298	ENST00000466594		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	AUNIP	chr1	26185771	-	TRPM8	chr2	234904970	+
intron-3CDS	ENST00000408388	ENST00000220849		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	PVT1	chr8	128806980	+	EIF3E	chr8	109215732	-
intron-3CDS	ENST00000408388	ENST00000519030		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	PVT1	chr8	128806980	+	EIF3E	chr8	109215732	-
intron-5UTR	ENST00000408388	ENST00000519517		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	PVT1	chr8	128806980	+	EIF3E	chr8	109215732	-
Frame-shit	ENST00000264485	ENST00000538789		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000264485	ENST00000481602		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000264485	ENST00000374298		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
Frame-shit	ENST00000425175	ENST00000538789		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000425175	ENST00000481602		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000425175	ENST00000374298		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
Frame-shit	ENST00000351898	ENST00000538789		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000351898	ENST00000481602		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000351898	ENST00000374298		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
Frame-shit	ENST00000340595	ENST00000538789		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000340595	ENST00000481602		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000340595	ENST00000374298		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
3UTR-3CDS	ENST00000514331	ENST00000538789		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
3UTR-intron	ENST00000514331	ENST00000481602		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
3UTR-intron	ENST00000514331	ENST00000374298		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
Frame-shit	ENST00000512686	ENST00000538789		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000512686	ENST00000481602		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-intron	ENST00000512686	ENST00000374298		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	SLC4A4	chr4	72263370	+	AUNIP	chr1	26162337	-
5CDS-5UTR	ENST00000332149	ENST00000447054		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000265022		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000344484		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000382164		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000544847		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000447054		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000265022		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000344484		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000382164		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000544847		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000447054		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000265022		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000344484		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000382164		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000544847		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000447054		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000265022		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000344484		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000382164		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000544847		TCGA	LD	PRAD	TCGA-KK-A7AZ-01A	TMPRSS2	chr21	42861434	-	DGKG	chr3	185823731	-
3UTR-3CDS	ENST00000537532	ENST00000374980		TCGA	LD	PRAD	TCGA-KK-A7B0-01A	ZNF664	chr12	124458567	+	EIF2S2	chr20	32693351	-
5UTR-3CDS	ENST00000539644	ENST00000374980		TCGA	LD	PRAD	TCGA-KK-A7B0-01A	ZNF664	chr12	124458567	+	EIF2S2	chr20	32693351	-
5UTR-3CDS	ENST00000392404	ENST00000374980		TCGA	LD	PRAD	TCGA-KK-A7B0-01A	ZNF664	chr12	124458567	+	EIF2S2	chr20	32693351	-
5UTR-3CDS	ENST00000538932	ENST00000374980		TCGA	LD	PRAD	TCGA-KK-A7B0-01A	ZNF664	chr12	124458567	+	EIF2S2	chr20	32693351	-
5UTR-3CDS	ENST00000337815	ENST00000374980		TCGA	LD	PRAD	TCGA-KK-A7B0-01A	ZNF664	chr12	124458567	+	EIF2S2	chr20	32693351	-
In-frame	ENST00000282541	ENST00000331889		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	GPD1L	chr3	32188226	+	CNOT10	chr3	32750162	+
In-frame	ENST00000282541	ENST00000328834		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	GPD1L	chr3	32188226	+	CNOT10	chr3	32750162	+
5CDS-5UTR	ENST00000282541	ENST00000538368		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	GPD1L	chr3	32188226	+	CNOT10	chr3	32750162	+
5CDS-5UTR	ENST00000282541	ENST00000454516		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	GPD1L	chr3	32188226	+	CNOT10	chr3	32750162	+
5CDS-intron	ENST00000282541	ENST00000463697		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	GPD1L	chr3	32188226	+	CNOT10	chr3	32750162	+
5UTR-3CDS	ENST00000425759	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000425759	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000425759	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000425759	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000425759	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000425759	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000425759	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
Frame-shit	ENST00000292733	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000292733	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000292733	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000292733	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000292733	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000292733	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000292733	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-3CDS	ENST00000542773	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000542773	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000542773	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000542773	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000542773	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000542773	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5UTR-intron	ENST00000542773	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
Frame-shit	ENST00000263205	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000263205	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000263205	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000263205	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000263205	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000263205	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000263205	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-3CDS	ENST00000406969	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000406969	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000406969	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000406969	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000406969	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000406969	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000406969	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
Frame-shit	ENST00000382974	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000382974	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000382974	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000382974	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000382974	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000382974	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
5CDS-intron	ENST00000382974	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-3CDS	ENST00000541476	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000541476	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000541476	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000541476	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000541476	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000541476	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000541476	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-3CDS	ENST00000478831	ENST00000261530		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000478831	ENST00000556675		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000478831	ENST00000557263		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000478831	ENST00000557207		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000478831	ENST00000312858		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000478831	ENST00000556663		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
intron-intron	ENST00000478831	ENST00000553588		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	MED15	chr22	20862033	+	GPATCH2L	chr14	76638186	+
In-frame	ENST00000249636	ENST00000428715		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
5CDS-intron	ENST00000249636	ENST00000487727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
5CDS-intron	ENST00000249636	ENST00000302481		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
In-frame	ENST00000545237	ENST00000428715		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
5CDS-intron	ENST00000545237	ENST00000487727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
5CDS-intron	ENST00000545237	ENST00000302481		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
intron-3CDS	ENST00000567417	ENST00000428715		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
intron-intron	ENST00000567417	ENST00000487727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
intron-intron	ENST00000567417	ENST00000302481		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	PIAS1	chr15	68379088	+	HMCN2	chr9	133297964	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A7B1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000435504	ENST00000380794		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000435504	ENST00000405623		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000435504	ENST00000264708		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000435504	ENST00000395826		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000336112	ENST00000380794		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000336112	ENST00000405623		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000336112	ENST00000264708		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5CDS-5UTR	ENST00000336112	ENST00000395826		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000272341	ENST00000380794		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000272341	ENST00000405623		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000272341	ENST00000264708		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000272341	ENST00000395826		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000404843	ENST00000380794		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000404843	ENST00000405623		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000404843	ENST00000264708		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
intron-5UTR	ENST00000404843	ENST00000395826		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000497092	ENST00000380794		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000497092	ENST00000405623		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000497092	ENST00000264708		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
5UTR-5UTR	ENST00000497092	ENST00000395826		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	ASXL2	chr2	26022254	-	POMC	chr2	25387661	-
In-frame	ENST00000462284	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000356290	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000540827	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
In-frame	ENST00000258149	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000428863	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000393412	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
In-frame	ENST00000258148	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000544561	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000393410	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000393413	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000517852	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000545204	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
In-frame	ENST00000350057	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000360430	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000299252	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000348801	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
Frame-shit	ENST00000478070	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
intron-3CDS	ENST00000544125	ENST00000341446		TCGA	LD	PRAD	TCGA-KK-A7B2-01A	MDM2	chr12	69214154	+	BRI3BP	chr12	125509890	+
In-frame	ENST00000396257	ENST00000313367		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396257	ENST00000431825		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396257	ENST00000352860		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396257	ENST00000353930		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396257	ENST00000396431		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396257	ENST00000409069		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396257	ENST00000396429		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
5CDS-5UTR	ENST00000396257	ENST00000487020		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000313367		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000431825		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000352860		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000353930		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000396431		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000409069		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000396259	ENST00000396429		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
5CDS-5UTR	ENST00000396259	ENST00000487020		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000313367		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000431825		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000352860		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000353930		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000396431		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000409069		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-3CDS	ENST00000483799	ENST00000396429		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
intron-5UTR	ENST00000483799	ENST00000487020		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000313367		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000431825		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000352860		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000353930		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000396431		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000409069		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000258679	ENST00000396429		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
5CDS-5UTR	ENST00000258679	ENST00000487020		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000313367		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000431825		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000352860		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000353930		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000396431		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000409069		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
In-frame	ENST00000449726	ENST00000396429		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
5CDS-5UTR	ENST00000449726	ENST00000487020		TCGA	LD	PRAD	TCGA-KK-A7B3-01A	PLEKHA8	chr7	30100558	+	OSBPL3	chr7	24849570	-
5CDS-intron	ENST00000221455	ENST00000252482		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	CLASRP	chr19	45556435	+	EXOC3L2	chr19	45738084	-
5CDS-intron	ENST00000221455	ENST00000413988		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	CLASRP	chr19	45556435	+	EXOC3L2	chr19	45738084	-
5CDS-intron	ENST00000391953	ENST00000252482		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	CLASRP	chr19	45556435	+	EXOC3L2	chr19	45738084	-
5CDS-intron	ENST00000391953	ENST00000413988		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	CLASRP	chr19	45556435	+	EXOC3L2	chr19	45738084	-
5CDS-intron	ENST00000544944	ENST00000252482		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	CLASRP	chr19	45556435	+	EXOC3L2	chr19	45738084	-
5CDS-intron	ENST00000544944	ENST00000413988		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	CLASRP	chr19	45556435	+	EXOC3L2	chr19	45738084	-
intron-3CDS	ENST00000250448	ENST00000442366		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000250448	ENST00000358008		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000250448	ENST00000394701		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000540786	ENST00000442366		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000540786	ENST00000358008		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000540786	ENST00000394701		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000545425	ENST00000442366		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000545425	ENST00000358008		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000545425	ENST00000394701		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	FOXA1	chr14	38060605	-	AIMP1	chr4	107258026	+
intron-3CDS	ENST00000379357	ENST00000307751		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-5UTR	ENST00000379357	ENST00000597803		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-3CDS	ENST00000511313	ENST00000307751		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-5UTR	ENST00000511313	ENST00000597803		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-3CDS	ENST00000504157	ENST00000307751		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-5UTR	ENST00000504157	ENST00000597803		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-3CDS	ENST00000513438	ENST00000307751		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-5UTR	ENST00000513438	ENST00000597803		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	POLR2J3	chr7	102207444	-	LGALS4	chr19	39297235	-
intron-5UTR	ENST00000364849	ENST00000272167		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	SNHG6	chr8	67837672	-	EPHX1	chr1	226016426	+
intron-5UTR	ENST00000364849	ENST00000366837		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	SNHG6	chr8	67837672	-	EPHX1	chr1	226016426	+
intron-intron	ENST00000364849	ENST00000467015		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	SNHG6	chr8	67837672	-	EPHX1	chr1	226016426	+
intron-3CDS	ENST00000412849	ENST00000281924		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	ZRANB3	chr2	136288697	-	TMEM163	chr2	135309662	-
intron-3CDS	ENST00000401392	ENST00000281924		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	ZRANB3	chr2	136288697	-	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000264159	ENST00000281924		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	ZRANB3	chr2	136288697	-	TMEM163	chr2	135309662	-
5UTR-3CDS	ENST00000536680	ENST00000281924		TCGA	LD	PRAD	TCGA-KK-A7B4-01A	ZRANB3	chr2	136288697	-	TMEM163	chr2	135309662	-
5UTR-intron	ENST00000341084	ENST00000396472		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
5UTR-intron	ENST00000341084	ENST00000382406		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
5UTR-intron	ENST00000341084	ENST00000280987		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
5UTR-intron	ENST00000341084	ENST00000554052		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000519449	ENST00000396472		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000519449	ENST00000382406		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000519449	ENST00000280987		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000519449	ENST00000554052		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000523255	ENST00000396472		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000523255	ENST00000382406		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000523255	ENST00000280987		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
intron-intron	ENST00000523255	ENST00000554052		TCGA	LD	PRAD	TCGA-KK-A8I4-01A	RNF19A	chr8	101322095	-	FAM177A1	chr14	35571887	+
5CDS-5UTR	ENST00000481646	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000481646	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-intron	ENST00000481646	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-intron	ENST00000481646	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000481646	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000469044	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000469044	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000469044	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000469044	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000469044	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5UTR-5UTR	ENST00000491704	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5UTR-5UTR	ENST00000491704	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5UTR-intron	ENST00000491704	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5UTR-intron	ENST00000491704	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5UTR-5UTR	ENST00000491704	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000358441	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000358441	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-intron	ENST00000358441	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-intron	ENST00000358441	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000358441	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000489213	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000489213	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000489213	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000489213	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000489213	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000461822	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000461822	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000461822	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000461822	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000461822	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000485396	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000485396	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000485396	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000485396	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000485396	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000471453	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000471453	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-intron	ENST00000471453	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-intron	ENST00000471453	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000471453	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000470821	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000470821	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000470821	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000470821	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000470821	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000393058	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000393058	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000393058	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000393058	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000393058	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000538260	ENST00000289104		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000538260	ENST00000423968		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000538260	ENST00000464896		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-intron	ENST00000538260	ENST00000461114		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
intron-5UTR	ENST00000538260	ENST00000474559		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	ARMC8	chr3	137907372	+	MRAS	chr3	138091708	+
5CDS-5UTR	ENST00000298248	ENST00000241124		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000298248	ENST00000400066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000298248	ENST00000400065		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000298248	ENST00000356192		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000241124		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000400066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000400065		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5CDS-5UTR	ENST00000382812	ENST00000356192		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000241124		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000400066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000400065		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
5UTR-5UTR	ENST00000480748	ENST00000356192		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	CRYL1	chr13	21063509	-	GJB6	chr13	20797634	-
intron-5UTR	ENST00000507120	ENST00000429964		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
intron-5UTR	ENST00000507120	ENST00000506784		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
intron-5UTR	ENST00000507120	ENST00000360066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
intron-intron	ENST00000507120	ENST00000509056		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000416614	ENST00000429964		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000416614	ENST00000506784		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000416614	ENST00000360066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-intron	ENST00000416614	ENST00000509056		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000314262	ENST00000429964		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000314262	ENST00000506784		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000314262	ENST00000360066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-intron	ENST00000314262	ENST00000509056		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000502735	ENST00000429964		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000502735	ENST00000506784		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000502735	ENST00000360066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-intron	ENST00000502735	ENST00000509056		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000398071	ENST00000429964		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000398071	ENST00000506784		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-5UTR	ENST00000398071	ENST00000360066		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
5CDS-intron	ENST00000398071	ENST00000509056		TCGA	LD	PRAD	TCGA-KK-A8I5-01A	NOP14	chr4	2964852	-	CDK18	chr1	205492275	+
In-frame	ENST00000295688	ENST00000368575		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000295688	ENST00000462680		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
In-frame	ENST00000368259	ENST00000368575		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000368259	ENST00000462680		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
Frame-shit	ENST00000368261	ENST00000368575		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000368261	ENST00000462680		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
In-frame	ENST00000472765	ENST00000368575		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
5CDS-5UTR	ENST00000472765	ENST00000462680		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
5UTR-3CDS	ENST00000368256	ENST00000368575		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
5UTR-5UTR	ENST00000368256	ENST00000462680		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	CCT3	chr1	156303338	-	RAB13	chr1	153957257	-
In-frame	ENST00000323851	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000323851	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000323851	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NDRG1	chr8	134292478	-	ERG	chr21	39817547	-
5CDS-5UTR	ENST00000296802	ENST00000482199		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
5CDS-5UTR	ENST00000296802	ENST00000474120		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
5CDS-5UTR	ENST00000296802	ENST00000442303		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
5CDS-5UTR	ENST00000296802	ENST00000223136		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
intron-5UTR	ENST00000513356	ENST00000482199		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
intron-5UTR	ENST00000513356	ENST00000474120		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
intron-5UTR	ENST00000513356	ENST00000442303		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
intron-5UTR	ENST00000513356	ENST00000223136		TCGA	LD	PRAD	TCGA-KK-A8I6-01A	NSA2	chr5	74069885	+	FIS1	chr7	100884187	-
5CDS-intron	ENST00000261867	ENST00000408388		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLC30A4	chr15	45814162	-	PVT1	chr8	129082406	+
5UTR-intron	ENST00000559667	ENST00000408388		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLC30A4	chr15	45814162	-	PVT1	chr8	129082406	+
5CDS-5UTR	ENST00000294008	ENST00000571688		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000413364		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000339430		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000381810		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000570904		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000571459		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-intron	ENST00000294008	ENST00000572255		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000576036		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000574763		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000571976		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
5CDS-5UTR	ENST00000294008	ENST00000574703		TCGA	LD	PRAD	TCGA-KK-A8I7-01A	SLX4	chr16	3644454	-	LITAF	chr16	11650591	-
Frame-shit	ENST00000444376	ENST00000326402		TCGA	LD	PRAD	TCGA-KK-A8I8-01A	HNRNPU	chr1	245021313	-	SLC36A4	chr11	92918980	-
5CDS-5UTR	ENST00000444376	ENST00000529184		TCGA	LD	PRAD	TCGA-KK-A8I8-01A	HNRNPU	chr1	245021313	-	SLC36A4	chr11	92918980	-
Frame-shit	ENST00000283179	ENST00000326402		TCGA	LD	PRAD	TCGA-KK-A8I8-01A	HNRNPU	chr1	245021313	-	SLC36A4	chr11	92918980	-
5CDS-5UTR	ENST00000283179	ENST00000529184		TCGA	LD	PRAD	TCGA-KK-A8I8-01A	HNRNPU	chr1	245021313	-	SLC36A4	chr11	92918980	-
intron-3CDS	ENST00000591471	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591471	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591471	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000589218	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000589218	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000589218	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000544914	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000544914	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000544914	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591417	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591417	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591417	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000592168	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000592168	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000592168	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000392153	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000392153	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000392153	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000589392	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000589392	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000589392	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
5UTR-3CDS	ENST00000324411	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
5UTR-3CDS	ENST00000324411	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
5UTR-3CDS	ENST00000324411	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000591259	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000591259	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
In-frame	ENST00000591259	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000541583	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000541583	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000541583	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591134	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591134	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000591134	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000586897	ENST00000600118		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000586897	ENST00000601220		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
intron-3CDS	ENST00000586897	ENST00000312547		TCGA	LD	PRAD	TCGA-KK-A8IA-01A	HKR1	chr19	37826159	+	CHMP2A	chr19	59063552	-
5UTR-3UTR	ENST00000598463	ENST00000601154		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-5UTR	ENST00000598463	ENST00000221922		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-3UTR	ENST00000345523	ENST00000601154		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-5UTR	ENST00000345523	ENST00000221922		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-3UTR	ENST00000391812	ENST00000601154		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-5UTR	ENST00000391812	ENST00000221922		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-3UTR	ENST00000596655	ENST00000601154		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-5UTR	ENST00000596655	ENST00000221922		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-3UTR	ENST00000595794	ENST00000601154		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-5UTR	ENST00000595794	ENST00000221922		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	C19orf48	chr19	51305474	-	CCDC9	chr19	47759780	+
5UTR-3CDS	ENST00000434000	ENST00000427748		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	GPATCH8	chr17	42541840	-	GRM7-AS2	chr3	6935706	-
Frame-shit	ENST00000591680	ENST00000427748		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	GPATCH8	chr17	42541840	-	GRM7-AS2	chr3	6935706	-
intron-3CDS	ENST00000586265	ENST00000427748		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	GPATCH8	chr17	42541840	-	GRM7-AS2	chr3	6935706	-
intron-3CDS	ENST00000592154	ENST00000427748		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	GPATCH8	chr17	42541840	-	GRM7-AS2	chr3	6935706	-
intron-3CDS	ENST00000588554	ENST00000427748		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	GPATCH8	chr17	42541840	-	GRM7-AS2	chr3	6935706	-
5CDS-5UTR	ENST00000167462	ENST00000512055		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000429747		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000512332		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000511604		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000502818		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000167462	ENST00000503204		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000375227	ENST00000512055		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000429747		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000512332		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000511604		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000502818		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000375227	ENST00000503204		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000392550	ENST00000512055		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000429747		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000512332		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000511604		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000502818		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000392550	ENST00000503204		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000578363	ENST00000512055		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000429747		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000512332		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000511604		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000502818		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000578363	ENST00000503204		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-5UTR	ENST00000577200	ENST00000512055		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000429747		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000512332		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000511604		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000502818		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5CDS-intron	ENST00000577200	ENST00000503204		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	LLGL2	chr17	73559544	+	CPNE4	chr3	131759165	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-KK-A8IC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000298248	ENST00000241125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CRYL1	chr13	21006241	-	GJA3	chr13	20717444	-
5CDS-5UTR	ENST00000382812	ENST00000241125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CRYL1	chr13	21006241	-	GJA3	chr13	20717444	-
5UTR-5UTR	ENST00000480748	ENST00000241125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CRYL1	chr13	21006241	-	GJA3	chr13	20717444	-
5UTR-3CDS	ENST00000260327	ENST00000299957		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3CDS	ENST00000260327	ENST00000360824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3CDS	ENST00000260327	ENST00000345795		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3UTR	ENST00000260327	ENST00000429162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3CDS	ENST00000396780	ENST00000299957		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3CDS	ENST00000396780	ENST00000360824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3CDS	ENST00000396780	ENST00000345795		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
5UTR-3UTR	ENST00000396780	ENST00000429162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000558966	ENST00000299957		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000558966	ENST00000360824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000558966	ENST00000345795		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3UTR	ENST00000558966	ENST00000429162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000558373	ENST00000299957		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000558373	ENST00000360824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000558373	ENST00000345795		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3UTR	ENST00000558373	ENST00000429162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000561189	ENST00000299957		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000561189	ENST00000360824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000561189	ENST00000345795		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3UTR	ENST00000561189	ENST00000429162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	CTDSPL2	chr15	44719970	+	CASC4	chr15	44581357	+
intron-3CDS	ENST00000369250	ENST00000369422		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAM160B1	chr10	116593220	+	TECTB	chr10	114043493	+
intron-intron	ENST00000369250	ENST00000494328		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAM160B1	chr10	116593220	+	TECTB	chr10	114043493	+
intron-3CDS	ENST00000369248	ENST00000369422		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAM160B1	chr10	116593220	+	TECTB	chr10	114043493	+
intron-intron	ENST00000369248	ENST00000494328		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAM160B1	chr10	116593220	+	TECTB	chr10	114043493	+
In-frame	ENST00000369246	ENST00000369422		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAM160B1	chr10	116593220	+	TECTB	chr10	114043493	+
5CDS-intron	ENST00000369246	ENST00000494328		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAM160B1	chr10	116593220	+	TECTB	chr10	114043493	+
In-frame	ENST00000389677	ENST00000369162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000389677	ENST00000522650		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
5CDS-intron	ENST00000389677	ENST00000369143		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000538471	ENST00000369162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000538471	ENST00000522650		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000538471	ENST00000369143		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
intron-3CDS	ENST00000461803	ENST00000369162		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000461803	ENST00000522650		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
intron-intron	ENST00000461803	ENST00000369143		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	FAXC	chr6	99796983	-	ASCC3	chr6	100988263	-
5CDS-5UTR	ENST00000263274	ENST00000598463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000263274	ENST00000345523		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000263274	ENST00000391812		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000263274	ENST00000596655		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000263274	ENST00000595794		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000536218	ENST00000598463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000536218	ENST00000345523		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000536218	ENST00000391812		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000536218	ENST00000596655		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000536218	ENST00000595794		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000427526	ENST00000598463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000427526	ENST00000345523		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000427526	ENST00000391812		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000427526	ENST00000596655		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
5CDS-5UTR	ENST00000427526	ENST00000595794		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
intron-5UTR	ENST00000599165	ENST00000598463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
intron-5UTR	ENST00000599165	ENST00000345523		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
intron-5UTR	ENST00000599165	ENST00000391812		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
intron-5UTR	ENST00000599165	ENST00000596655		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
intron-5UTR	ENST00000599165	ENST00000595794		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	LIG1	chr19	48653020	-	C19orf48	chr19	51305514	-
Frame-shit	ENST00000230419	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000230419	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
5CDS-5UTR	ENST00000230419	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000349241	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
5CDS-5UTR	ENST00000349241	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000345201	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
5CDS-5UTR	ENST00000345201	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000352931	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
5CDS-5UTR	ENST00000352931	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-3CDS	ENST00000481273	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
intron-5UTR	ENST00000481273	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000476760	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
5CDS-5UTR	ENST00000476760	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000372067		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000417285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000324450		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000413642		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000372055		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000482630		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000425836		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000372064		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000372077		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000520948		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000523873		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000523950		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000518689		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000523125		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000457104		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000471863	ENST00000518824		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
5CDS-5UTR	ENST00000471863	ENST00000230480		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	PTK7	chr6	43044305	+	VEGFA	chr6	43742078	+
Frame-shit	ENST00000265062	ENST00000254730		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000265062	ENST00000483457		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000265062	ENST00000483569		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000482525	ENST00000254730		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000482525	ENST00000483457		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000482525	ENST00000483569		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000485280	ENST00000254730		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000485280	ENST00000483457		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
5CDS-intron	ENST00000485280	ENST00000483569		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RAB7A	chr3	128516912	+	EEFSEC	chr3	128126912	+
Frame-shit	ENST00000376874	ENST00000405201		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
Frame-shit	ENST00000376874	ENST00000404621		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
5CDS-5UTR	ENST00000376874	ENST00000404121		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
5CDS-5UTR	ENST00000376874	ENST00000356219		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
5CDS-5UTR	ENST00000376874	ENST00000397355		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
5CDS-5UTR	ENST00000376874	ENST00000429285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-3CDS	ENST00000340724	ENST00000405201		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-3CDS	ENST00000340724	ENST00000404621		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000340724	ENST00000404121		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000340724	ENST00000356219		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000340724	ENST00000397355		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000340724	ENST00000429285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-3CDS	ENST00000544468	ENST00000405201		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-3CDS	ENST00000544468	ENST00000404621		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000544468	ENST00000404121		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000544468	ENST00000356219		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000544468	ENST00000397355		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-5UTR	ENST00000544468	ENST00000429285		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	RILPL1	chr12	124008042	-	NCOR2	chr12	124922542	-
intron-3CDS	ENST00000493599	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
intron-3CDS	ENST00000372227	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000372229	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000372230	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000243896	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000317734	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000543605	ENST00000371711		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	SLC35C2	chr20	44993010	-	B4GALT5	chr20	48273239	-
intron-5UTR	ENST00000257915	ENST00000345093		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000257915	ENST00000394013		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000257915	ENST00000552656		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-intron	ENST00000257915	ENST00000552244		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000307660	ENST00000345093		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000307660	ENST00000394013		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000307660	ENST00000552656		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-intron	ENST00000307660	ENST00000552244		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000549867	ENST00000345093		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000549867	ENST00000394013		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000549867	ENST00000552656		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-intron	ENST00000549867	ENST00000552244		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000548115	ENST00000345093		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000548115	ENST00000394013		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-5UTR	ENST00000548115	ENST00000552656		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
intron-intron	ENST00000548115	ENST00000552244		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	TFCP2	chr12	51566384	-	RNF41	chr12	56610397	-
3UTR-3CDS	ENST00000395996	ENST00000241463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
3UTR-intron	ENST00000395996	ENST00000480803		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
Frame-shit	ENST00000358544	ENST00000241463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
5CDS-intron	ENST00000358544	ENST00000480803		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
Frame-shit	ENST00000357162	ENST00000241463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
5CDS-intron	ENST00000357162	ENST00000480803		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
intron-3CDS	ENST00000355155	ENST00000241463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
intron-intron	ENST00000355155	ENST00000480803		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
intron-3CDS	ENST00000441350	ENST00000241463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
intron-intron	ENST00000441350	ENST00000480803		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
intron-3CDS	ENST00000521932	ENST00000241463		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
intron-intron	ENST00000521932	ENST00000480803		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	VPS13B	chr8	100733275	+	RASL11A	chr13	27845621	+
In-frame	ENST00000336078	ENST00000356462		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000336078	ENST00000400345		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000336078	ENST00000589054		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000256832		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000382850		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000256830		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000336078	ENST00000588516		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000456986		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000435432		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000357895		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000336078	ENST00000586263		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000336078	ENST00000456173		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000336078	ENST00000431212		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000591083	ENST00000356462		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000591083	ENST00000400345		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591083	ENST00000589054		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000256832		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000382850		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000256830		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000591083	ENST00000588516		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000456986		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000435432		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000357895		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591083	ENST00000586263		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591083	ENST00000456173		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591083	ENST00000431212		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000589288	ENST00000356462		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000589288	ENST00000400345		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000589288	ENST00000589054		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000256832		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000382850		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000256830		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000589288	ENST00000588516		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000456986		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000435432		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000357895		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000589288	ENST00000586263		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000589288	ENST00000456173		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000589288	ENST00000431212		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000591230	ENST00000356462		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000591230	ENST00000400345		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591230	ENST00000589054		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000256832		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000382850		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000256830		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000591230	ENST00000588516		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000456986		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000435432		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000357895		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591230	ENST00000586263		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591230	ENST00000456173		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591230	ENST00000431212		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000591808	ENST00000356462		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
In-frame	ENST00000591808	ENST00000400345		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591808	ENST00000589054		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000256832		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000382850		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000256830		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-3UTR	ENST00000591808	ENST00000588516		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000456986		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000435432		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000357895		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000591808	ENST00000586263		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591808	ENST00000456173		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-intron	ENST00000591808	ENST00000431212		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000588956	ENST00000356462		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000588956	ENST00000400345		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000588956	ENST00000589054		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000256832		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000382850		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000256830		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-3UTR	ENST00000588956	ENST00000588516		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000456986		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000435432		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000357895		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-5UTR	ENST00000588956	ENST00000586263		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000588956	ENST00000456173		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
intron-intron	ENST00000588956	ENST00000431212		TCGA	LD	PRAD	TCGA-KK-A8ID-01A	ZNF532	chr18	56587865	+	NEDD4L	chr18	55833020	+
5CDS-5UTR	ENST00000322536	ENST00000455611		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000322536	ENST00000454497		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000322536	ENST00000447906		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000322536	ENST00000509620		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000322536	ENST00000296579		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-5UTR	ENST00000526794	ENST00000455611		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000526794	ENST00000454497		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000526794	ENST00000447906		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000526794	ENST00000509620		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-intron	ENST00000526794	ENST00000296579		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
intron-5UTR	ENST00000534221	ENST00000455611		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
intron-intron	ENST00000534221	ENST00000454497		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
intron-intron	ENST00000534221	ENST00000447906		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
intron-intron	ENST00000534221	ENST00000509620		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
intron-intron	ENST00000534221	ENST00000296579		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	DDX10	chr11	108577564	+	OTUD4	chr4	146032280	-
5CDS-3UTR	ENST00000333743	ENST00000590707		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	GABRG3	chr15	27725933	+	NBPF22P	chr5	85578549	+
5CDS-3UTR	ENST00000555083	ENST00000590707		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	GABRG3	chr15	27725933	+	NBPF22P	chr5	85578549	+
intron-3UTR	ENST00000554786	ENST00000590707		TCGA	LD	PRAD	TCGA-KK-A8IF-01A	GABRG3	chr15	27725933	+	NBPF22P	chr5	85578549	+
5CDS-5UTR	ENST00000447540	ENST00000510238		TCGA	LD	PRAD	TCGA-KK-A8IG-01A	CHD9	chr16	53321926	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000566029	ENST00000510238		TCGA	LD	PRAD	TCGA-KK-A8IG-01A	CHD9	chr16	53321926	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000564845	ENST00000510238		TCGA	LD	PRAD	TCGA-KK-A8IG-01A	CHD9	chr16	53321926	+	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000398510	ENST00000510238		TCGA	LD	PRAD	TCGA-KK-A8IG-01A	CHD9	chr16	53321926	+	CASC16	chr16	52624979	-
intron-5UTR	ENST00000564582	ENST00000510238		TCGA	LD	PRAD	TCGA-KK-A8IG-01A	CHD9	chr16	53321926	+	CASC16	chr16	52624979	-
5UTR-3CDS	ENST00000572681	ENST00000607517		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
5UTR-3CDS	ENST00000572681	ENST00000378012		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
5UTR-3CDS	ENST00000572681	ENST00000378009		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000575839	ENST00000607517		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000575839	ENST00000378012		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000575839	ENST00000378009		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000160740	ENST00000607517		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000160740	ENST00000378012		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000160740	ENST00000378009		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000575354	ENST00000607517		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000575354	ENST00000378012		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
intron-3CDS	ENST00000575354	ENST00000378009		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CIC	chr19	42772746	+	CD177	chr19	43858005	+
5UTR-3CDS	ENST00000577830	ENST00000514116		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-3CDS	ENST00000577830	ENST00000251776		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-5UTR	ENST00000577830	ENST00000505382		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-5UTR	ENST00000577830	ENST00000511082		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-intron	ENST00000577830	ENST00000504401		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-intron	ENST00000577830	ENST00000511862		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-3CDS	ENST00000407144	ENST00000514116		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-3CDS	ENST00000407144	ENST00000251776		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-5UTR	ENST00000407144	ENST00000505382		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-5UTR	ENST00000407144	ENST00000511082		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-intron	ENST00000407144	ENST00000504401		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-intron	ENST00000407144	ENST00000511862		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-3CDS	ENST00000360238	ENST00000514116		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-3CDS	ENST00000360238	ENST00000251776		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-5UTR	ENST00000360238	ENST00000505382		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-5UTR	ENST00000360238	ENST00000511082		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-intron	ENST00000360238	ENST00000504401		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-intron	ENST00000360238	ENST00000511862		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-3CDS	ENST00000577840	ENST00000514116		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-3CDS	ENST00000577840	ENST00000251776		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-5UTR	ENST00000577840	ENST00000505382		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-5UTR	ENST00000577840	ENST00000511082		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-intron	ENST00000577840	ENST00000504401		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
5UTR-intron	ENST00000577840	ENST00000511862		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-3CDS	ENST00000578357	ENST00000514116		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-3CDS	ENST00000578357	ENST00000251776		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-5UTR	ENST00000578357	ENST00000505382		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-5UTR	ENST00000578357	ENST00000511082		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-intron	ENST00000578357	ENST00000504401		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
intron-intron	ENST00000578357	ENST00000511862		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	CUEDC1	chr17	56032586	-	ROPN1B	chr3	125695847	+
In-frame	ENST00000393567	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
In-frame	ENST00000393567	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
In-frame	ENST00000448089	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
In-frame	ENST00000448089	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000448691	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000448691	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000321489	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000321489	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000538248	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000538248	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000541601	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000541601	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000288168	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000288168	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000393550	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000393550	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000543639	ENST00000261712		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3CDS	ENST00000543639	ENST00000457654		TCGA	LD	PRAD	TCGA-KK-A8IH-01A	HYDIN	chr16	71052032	-	PSMD11	chr17	30791067	+
intron-3UTR	ENST00000347401	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000347401	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000347401	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000347401	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000347401	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000353578	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000353578	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000353578	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000353578	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000353578	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000295550	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000295550	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000295550	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000295550	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000295550	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000472056	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000472056	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000472056	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000472056	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000472056	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000409809	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000409809	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000409809	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000409809	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000409809	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000346358	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000346358	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000346358	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000346358	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000346358	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000392004	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392004	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392004	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392004	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392004	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000392003	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392003	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392003	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392003	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000392003	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-3UTR	ENST00000473258	ENST00000399959		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000473258	ENST00000478993		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000473258	ENST00000457138		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000473258	ENST00000441189		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
intron-intron	ENST00000473258	ENST00000542215		TCGA	LD	PRAD	TCGA-KK-A8II-01A	COL6A3	chr2	238252219	-	DDX3X	chrX	41209154	+
5CDS-5UTR	ENST00000330909	ENST00000542120		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000330909	ENST00000229088		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000330909	ENST00000456757		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000330909	ENST00000539867		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000402939	ENST00000542120		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000402939	ENST00000229088		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000402939	ENST00000456757		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000402939	ENST00000539867		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000483466	ENST00000542120		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000483466	ENST00000229088		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000483466	ENST00000456757		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000483466	ENST00000539867		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000497477	ENST00000542120		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-5UTR	ENST00000497477	ENST00000229088		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000497477	ENST00000456757		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
5CDS-intron	ENST00000497477	ENST00000539867		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
intron-5UTR	ENST00000470990	ENST00000542120		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
intron-5UTR	ENST00000470990	ENST00000229088		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
intron-intron	ENST00000470990	ENST00000456757		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
intron-intron	ENST00000470990	ENST00000539867		TCGA	LD	PRAD	TCGA-KK-A8II-01A	MAGI1	chr3	66023671	-	TBC1D30	chr12	65221615	+
Frame-shit	ENST00000356805	ENST00000380118		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000356805	ENST00000380125		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000356805	ENST00000413766		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000356805	ENST00000361538		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000356805	ENST00000465828		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
Frame-shit	ENST00000333896	ENST00000380118		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000333896	ENST00000380125		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000333896	ENST00000413766		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000333896	ENST00000361538		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
5CDS-5UTR	ENST00000333896	ENST00000465828		TCGA	LD	PRAD	TCGA-KK-A8II-01A	SPTBN1	chr2	54826380	+	ECI2	chr6	4133935	-
intron-3CDS	ENST00000398571	ENST00000295055		TCGA	LD	PRAD	TCGA-KK-A8II-01A	USP34	chr2	61510379	-	CAPN13	chr2	30977230	-
intron-3CDS	ENST00000398571	ENST00000534090		TCGA	LD	PRAD	TCGA-KK-A8II-01A	USP34	chr2	61510379	-	CAPN13	chr2	30977230	-
intron-intron	ENST00000398571	ENST00000465960		TCGA	LD	PRAD	TCGA-KK-A8II-01A	USP34	chr2	61510379	-	CAPN13	chr2	30977230	-
intron-3CDS	ENST00000472689	ENST00000295055		TCGA	LD	PRAD	TCGA-KK-A8II-01A	USP34	chr2	61510379	-	CAPN13	chr2	30977230	-
intron-3CDS	ENST00000472689	ENST00000534090		TCGA	LD	PRAD	TCGA-KK-A8II-01A	USP34	chr2	61510379	-	CAPN13	chr2	30977230	-
intron-intron	ENST00000472689	ENST00000465960		TCGA	LD	PRAD	TCGA-KK-A8II-01A	USP34	chr2	61510379	-	CAPN13	chr2	30977230	-
5UTR-intron	ENST00000322366	ENST00000448083		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000322366	ENST00000312562		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000322366	ENST00000531493		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000322366	ENST00000532401		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000295888	ENST00000448083		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000295888	ENST00000312562		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000295888	ENST00000531493		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
5UTR-intron	ENST00000295888	ENST00000532401		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
intron-intron	ENST00000512267	ENST00000448083		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
intron-intron	ENST00000512267	ENST00000312562		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
intron-intron	ENST00000512267	ENST00000531493		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
intron-intron	ENST00000512267	ENST00000532401		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	WDFY3	chr4	85853423	-	FOSL1	chr11	65664477	-
In-frame	ENST00000369577	ENST00000567164		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000369577	ENST00000219301		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000369577	ENST00000543437		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
5CDS-5UTR	ENST00000369577	ENST00000563336		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000339907	ENST00000567164		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000339907	ENST00000219301		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000339907	ENST00000543437		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
5CDS-5UTR	ENST00000339907	ENST00000563336		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000392985	ENST00000567164		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000392985	ENST00000219301		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
In-frame	ENST00000392985	ENST00000543437		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
5CDS-5UTR	ENST00000392985	ENST00000563336		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
3UTR-3CDS	ENST00000369578	ENST00000567164		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
3UTR-3CDS	ENST00000369578	ENST00000219301		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
3UTR-3CDS	ENST00000369578	ENST00000543437		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
3UTR-5UTR	ENST00000369578	ENST00000563336		TCGA	LD	PRAD	TCGA-KK-A8IJ-01A	ZNF292	chr6	87865477	+	PRSS54	chr16	58318625	-
5CDS-3UTR	ENST00000263881	ENST00000482239		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000263881	ENST00000281961		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000437545	ENST00000482239		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000437545	ENST00000281961		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000341681	ENST00000482239		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000341681	ENST00000281961		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
intron-3UTR	ENST00000484274	ENST00000482239		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
intron-3UTR	ENST00000484274	ENST00000281961		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000536018	ENST00000482239		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
5CDS-3UTR	ENST00000536018	ENST00000281961		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
intron-3UTR	ENST00000474502	ENST00000482239		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
intron-3UTR	ENST00000474502	ENST00000281961		TCGA	LD	PRAD	TCGA-KK-A8IL-01A	MAP4K3	chr2	39513993	-	TMEM178A	chr2	39934189	+
In-frame	ENST00000428559	ENST00000319550		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DERA	chr12	16064348	+	NT5DC1	chr6	116542217	+
In-frame	ENST00000532964	ENST00000319550		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DERA	chr12	16064348	+	NT5DC1	chr6	116542217	+
intron-3CDS	ENST00000526530	ENST00000319550		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DERA	chr12	16064348	+	NT5DC1	chr6	116542217	+
intron-3CDS	ENST00000532573	ENST00000319550		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DERA	chr12	16064348	+	NT5DC1	chr6	116542217	+
In-frame	ENST00000246069	ENST00000261839		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DSTN	chr20	17550856	+	MYO5C	chr15	52553324	-
In-frame	ENST00000246069	ENST00000443683		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DSTN	chr20	17550856	+	MYO5C	chr15	52553324	-
5CDS-5UTR	ENST00000246069	ENST00000541028		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DSTN	chr20	17550856	+	MYO5C	chr15	52553324	-
5UTR-3CDS	ENST00000474024	ENST00000261839		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DSTN	chr20	17550856	+	MYO5C	chr15	52553324	-
5UTR-3CDS	ENST00000474024	ENST00000443683		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DSTN	chr20	17550856	+	MYO5C	chr15	52553324	-
5UTR-5UTR	ENST00000474024	ENST00000541028		TCGA	LD	PRAD	TCGA-KK-A8IM-01A	DSTN	chr20	17550856	+	MYO5C	chr15	52553324	-
Frame-shit	ENST00000327835	ENST00000537855		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
Frame-shit	ENST00000327835	ENST00000379096		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
Frame-shit	ENST00000327835	ENST00000518937		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
5CDS-5UTR	ENST00000327835	ENST00000519303		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
5CDS-5UTR	ENST00000327835	ENST00000517427		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
5CDS-5UTR	ENST00000327835	ENST00000520527		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
5CDS-5UTR	ENST00000327835	ENST00000448733		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
5CDS-5UTR	ENST00000327835	ENST00000379097		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
5CDS-intron	ENST00000327835	ENST00000523395		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-3CDS	ENST00000520336	ENST00000537855		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-3CDS	ENST00000520336	ENST00000379096		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-3CDS	ENST00000520336	ENST00000518937		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-5UTR	ENST00000520336	ENST00000519303		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-5UTR	ENST00000520336	ENST00000517427		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-5UTR	ENST00000520336	ENST00000520527		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-5UTR	ENST00000520336	ENST00000448733		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-5UTR	ENST00000520336	ENST00000379097		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
intron-intron	ENST00000520336	ENST00000523395		TCGA	LD	PRAD	TCGA-M7-A71Y-01A	ZNF704	chr8	81733609	-	TPD52	chr8	80976828	-
In-frame	ENST00000587394	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587394	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587394	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587394	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587394	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587962	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587962	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587962	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587962	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000587962	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
intron-3CDS	ENST00000586608	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
intron-3CDS	ENST00000586608	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
intron-3CDS	ENST00000586608	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
intron-3CDS	ENST00000586608	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
intron-3CDS	ENST00000586608	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000589097	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000589097	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000589097	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000589097	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000589097	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000591099	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000591099	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000591099	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000591099	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000591099	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000326631	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000326631	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000326631	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000326631	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
In-frame	ENST00000326631	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
5UTR-3CDS	ENST00000589791	ENST00000344749		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
5UTR-3CDS	ENST00000589791	ENST00000262965		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
5UTR-3CDS	ENST00000589791	ENST00000453954		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
5UTR-3CDS	ENST00000589791	ENST00000395423		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
5UTR-3CDS	ENST00000589791	ENST00000588136		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF3	chr19	1622414	-
5CDS-intron	ENST00000587394	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000587394	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000587962	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000587962	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
intron-intron	ENST00000586608	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
intron-intron	ENST00000586608	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000589097	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000589097	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000591099	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000591099	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000326631	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000326631	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5UTR-intron	ENST00000589791	ENST00000282111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5UTR-intron	ENST00000589791	ENST00000494519		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	PLEKHJ1	chr19	2235922	-	TCF7L1	chr19	1622414	-
5CDS-intron	ENST00000339486	ENST00000361524		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000339486	ENST00000584787		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000339486	ENST00000538137		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-5UTR	ENST00000339486	ENST00000579111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000581585	ENST00000361524		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000581585	ENST00000584787		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000581585	ENST00000538137		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-5UTR	ENST00000581585	ENST00000579111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000577501	ENST00000361524		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000577501	ENST00000584787		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-intron	ENST00000577501	ENST00000538137		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
5CDS-5UTR	ENST00000577501	ENST00000579111		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	RIOK3	chr18	21047490	+	ZNF521	chr18	22925311	-
In-frame	ENST00000367178	ENST00000367474		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	SCAF8	chr6	155099179	+	SAMD5	chr6	147885530	+
3UTR-3CDS	ENST00000461219	ENST00000367474		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	SCAF8	chr6	155099179	+	SAMD5	chr6	147885530	+
In-frame	ENST00000417268	ENST00000367474		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	SCAF8	chr6	155099179	+	SAMD5	chr6	147885530	+
In-frame	ENST00000367186	ENST00000367474		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	SCAF8	chr6	155099179	+	SAMD5	chr6	147885530	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-M7-A71Z-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000233557	ENST00000599539		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000233557	ENST00000339471		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000233557	ENST00000251453		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000233557	ENST00000601655		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379852	ENST00000599539		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379852	ENST00000339471		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379852	ENST00000251453		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379852	ENST00000601655		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379863	ENST00000599539		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379863	ENST00000339471		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379863	ENST00000251453		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
In-frame	ENST00000379863	ENST00000601655		TCGA	LD	PRAD	TCGA-M7-A720-01A	NRBP1	chr2	27660227	+	RPS16	chr19	39924401	-
5UTR-3CDS	ENST00000281708	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000281708	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000281708	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000281708	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000281708	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-3CDS	ENST00000603548	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000603548	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000603548	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000603548	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000603548	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-3CDS	ENST00000604872	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604872	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604872	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604872	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604872	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-3CDS	ENST00000296555	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000296555	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000296555	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000296555	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000296555	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-3CDS	ENST00000263981	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000263981	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000263981	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000263981	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000263981	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-3CDS	ENST00000393956	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000393956	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000393956	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000393956	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000393956	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-3CDS	ENST00000603841	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000603841	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000603841	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000603841	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
intron-intron	ENST00000603841	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-3CDS	ENST00000604095	ENST00000506866		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604095	ENST00000274031		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604095	ENST00000404104		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604095	ENST00000406354		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5UTR-intron	ENST00000604095	ENST00000608958		TCGA	LD	PRAD	TCGA-M7-A724-01A	FBXW7	chr4	153456093	-	SETD7	chr4	140417675	-
5CDS-intron	ENST00000409843	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409843	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409843	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409843	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409830	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409830	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409830	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409830	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000410051	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000410051	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000410051	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000410051	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
3UTR-intron	ENST00000479019	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
3UTR-intron	ENST00000479019	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
3UTR-intron	ENST00000479019	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
3UTR-intron	ENST00000479019	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
intron-intron	ENST00000409805	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
intron-intron	ENST00000409805	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
intron-intron	ENST00000409805	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
intron-intron	ENST00000409805	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000359135	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000359135	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000359135	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000359135	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409580	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409580	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409580	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409580	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409637	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409637	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409637	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409637	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409609	ENST00000392365		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409609	ENST00000233156		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409609	ENST00000409676		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
5CDS-intron	ENST00000409609	ENST00000339091		TCGA	LD	PRAD	TCGA-M7-A724-01A	GULP1	chr2	189393922	+	TFPI	chr2	188394212	-
Frame-shit	ENST00000575270	ENST00000301031		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
In-frame	ENST00000575270	ENST00000579310		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000575270	ENST00000568929		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000575270	ENST00000566857		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000349223	ENST00000301031		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
In-frame	ENST00000349223	ENST00000579310		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000349223	ENST00000568929		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000349223	ENST00000566857		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000329524	ENST00000301031		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
In-frame	ENST00000329524	ENST00000579310		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000329524	ENST00000568929		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000329524	ENST00000566857		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
Frame-shit	ENST00000346183	ENST00000301031		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
In-frame	ENST00000346183	ENST00000579310		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000346183	ENST00000568929		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
5CDS-intron	ENST00000346183	ENST00000566857		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
3UTR-3CDS	ENST00000535127	ENST00000301031		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
3UTR-3CDS	ENST00000535127	ENST00000579310		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
3UTR-intron	ENST00000535127	ENST00000568929		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
3UTR-intron	ENST00000535127	ENST00000566857		TCGA	LD	PRAD	TCGA-M7-A724-01A	NFATC3	chr16	68225678	+	SPATA33	chr16	89735694	+
In-frame	ENST00000246533	ENST00000379013		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
Frame-shit	ENST00000246533	ENST00000222275		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
In-frame	ENST00000589146	ENST00000379013		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
Frame-shit	ENST00000589146	ENST00000222275		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
In-frame	ENST00000587718	ENST00000379013		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
Frame-shit	ENST00000587718	ENST00000222275		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
In-frame	ENST00000590874	ENST00000379013		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
Frame-shit	ENST00000590874	ENST00000222275		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
In-frame	ENST00000588815	ENST00000379013		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
Frame-shit	ENST00000588815	ENST00000222275		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
In-frame	ENST00000588780	ENST00000379013		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
Frame-shit	ENST00000588780	ENST00000222275		TCGA	LD	PRAD	TCGA-M7-A725-01A	CAPNS1	chr19	36637214	+	UPK1A	chr19	36168714	+
intron-3CDS	ENST00000406486	ENST00000536101		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000406486	ENST00000335473		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000406486	ENST00000407587		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-intron	ENST00000406486	ENST00000536204		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000358431	ENST00000536101		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000358431	ENST00000335473		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000358431	ENST00000407587		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-intron	ENST00000358431	ENST00000536204		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000401395	ENST00000536101		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000401395	ENST00000335473		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-3CDS	ENST00000401395	ENST00000407587		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
intron-intron	ENST00000401395	ENST00000536204		TCGA	LD	PRAD	TCGA-M7-A725-01A	KIAA1671	chr22	25508429	+	MYO18B	chr22	26317224	+
5UTR-3CDS	ENST00000438125	ENST00000339594		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
5UTR-3CDS	ENST00000438125	ENST00000404251		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
Frame-shit	ENST00000435769	ENST00000339594		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
Frame-shit	ENST00000435769	ENST00000404251		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
Frame-shit	ENST00000343721	ENST00000339594		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
Frame-shit	ENST00000343721	ENST00000404251		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
intron-3CDS	ENST00000438904	ENST00000339594		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
intron-3CDS	ENST00000438904	ENST00000404251		TCGA	LD	PRAD	TCGA-M7-A725-01A	TYW1B	chr7	72159677	-	BAZ1B	chr7	72892899	-
5CDS-5UTR	ENST00000327040	ENST00000221169		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	PSD3	chr8	18871073	-	NEFL	chr8	24811819	-
5CDS-5UTR	ENST00000440756	ENST00000221169		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	PSD3	chr8	18871073	-	NEFL	chr8	24811819	-
intron-5UTR	ENST00000286485	ENST00000221169		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	PSD3	chr8	18871073	-	NEFL	chr8	24811819	-
intron-5UTR	ENST00000428502	ENST00000221169		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	PSD3	chr8	18871073	-	NEFL	chr8	24811819	-
intron-5UTR	ENST00000523619	ENST00000221169		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	PSD3	chr8	18871073	-	NEFL	chr8	24811819	-
intron-5UTR	ENST00000520789	ENST00000221169		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	PSD3	chr8	18871073	-	NEFL	chr8	24811819	-
Frame-shit	ENST00000347869	ENST00000425346		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
Frame-shit	ENST00000347869	ENST00000424512		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
Frame-shit	ENST00000347869	ENST00000232508		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
In-frame	ENST00000347869	ENST00000418577		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
5CDS-3UTR	ENST00000347869	ENST00000419046		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000469838	ENST00000425346		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000469838	ENST00000424512		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000469838	ENST00000232508		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000469838	ENST00000418577		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3UTR	ENST00000469838	ENST00000419046		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000441812	ENST00000425346		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000441812	ENST00000424512		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000441812	ENST00000232508		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3CDS	ENST00000441812	ENST00000418577		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
intron-3UTR	ENST00000441812	ENST00000419046		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	RBM5	chr3	50143142	+	CYB561D2	chr3	50390672	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-MG-AAMC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-QU-A6IP-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3UTR	ENST00000306749	ENST00000367142		TCGA	LD	PRAD	TCGA-TK-A8OK-01A	FASN	chr17	80038807	-	NUCKS1	chr1	205687133	-
intron-intron	ENST00000306749	ENST00000464938		TCGA	LD	PRAD	TCGA-TK-A8OK-01A	FASN	chr17	80038807	-	NUCKS1	chr1	205687133	-
intron-3UTR	ENST00000579758	ENST00000367142		TCGA	LD	PRAD	TCGA-TK-A8OK-01A	FASN	chr17	80038807	-	NUCKS1	chr1	205687133	-
intron-intron	ENST00000579758	ENST00000464938		TCGA	LD	PRAD	TCGA-TK-A8OK-01A	FASN	chr17	80038807	-	NUCKS1	chr1	205687133	-
In-frame	ENST00000333039	ENST00000216044		TCGA	LD	PRAD	TCGA-TK-A8OK-01A	NPTXR	chr22	39219088	-	GTPBP1	chr22	39104850	+
5CDS-intron	ENST00000333039	ENST00000460605		TCGA	LD	PRAD	TCGA-TK-A8OK-01A	NPTXR	chr22	39219088	-	GTPBP1	chr22	39104850	+
5UTR-3CDS	ENST00000509176	ENST00000322366		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
5UTR-3CDS	ENST00000509176	ENST00000295888		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
5UTR-intron	ENST00000509176	ENST00000512267		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-3CDS	ENST00000333691	ENST00000322366		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-3CDS	ENST00000333691	ENST00000295888		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-intron	ENST00000333691	ENST00000512267		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-3CDS	ENST00000432775	ENST00000322366		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-3CDS	ENST00000432775	ENST00000295888		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-intron	ENST00000432775	ENST00000512267		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-3CDS	ENST00000504150	ENST00000322366		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-3CDS	ENST00000504150	ENST00000295888		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
intron-intron	ENST00000504150	ENST00000512267		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	CCSER1	chr4	91048982	+	WDFY3	chr4	85696291	-
5CDS-intron	ENST00000280333	ENST00000566442		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42621504	+
5CDS-intron	ENST00000280333	ENST00000318010		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42621504	+
5CDS-intron	ENST00000280333	ENST00000440615		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42621504	+
intron-intron	ENST00000484400	ENST00000566442		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42621504	+
intron-intron	ENST00000484400	ENST00000318010		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42621504	+
intron-intron	ENST00000484400	ENST00000440615		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	DOCK1	chr10	128926028	+	GANC	chr15	42621504	+
Frame-shit	ENST00000416247	ENST00000322019		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SMIM13	chr6	11094622	+	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000416247	ENST00000379386		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SMIM13	chr6	11094622	+	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000416247	ENST00000379390		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SMIM13	chr6	11094622	+	TM6SF1	chr15	83781549	+
Frame-shit	ENST00000416247	ENST00000565774		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SMIM13	chr6	11094622	+	TM6SF1	chr15	83781549	+
5CDS-3UTR	ENST00000416247	ENST00000564988		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SMIM13	chr6	11094622	+	TM6SF1	chr15	83781549	+
intron-3CDS	ENST00000549804	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000549804	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000547292	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000547292	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000424208	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000424208	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
3UTR-3CDS	ENST00000452731	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
3UTR-5UTR	ENST00000452731	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000554726	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000554726	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000551631	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000551631	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000459433	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000459433	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000551361	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000551361	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000553134	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000553134	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000551938	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000551938	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000384733	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000384733	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000551077	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000551077	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000546682	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000546682	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000553108	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000553108	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000384430	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000384430	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000516123	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000516123	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000553149	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000553149	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000441592	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000441592	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000365306	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000365306	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000414175	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000414175	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000456576	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000456576	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000363358	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000363358	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000424333	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000424333	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000450809	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000450809	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000453082	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000453082	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000365067	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000365067	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000390982	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000390982	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-3CDS	ENST00000580438	ENST00000378045		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
intron-5UTR	ENST00000580438	ENST00000483115		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	SNHG14	chr15	25512191	+	FUNDC1	chrX	44386611	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-TP-A8TT-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000488813	ENST00000325590		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-3CDS	ENST00000488813	ENST00000356264		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-3CDS	ENST00000488813	ENST00000428293		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-intron	ENST00000488813	ENST00000471913		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-3CDS	ENST00000395879	ENST00000325590		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-3CDS	ENST00000395879	ENST00000356264		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-3CDS	ENST00000395879	ENST00000428293		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
intron-intron	ENST00000395879	ENST00000471913		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000395880	ENST00000325590		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000395880	ENST00000356264		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000395880	ENST00000428293		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-intron	ENST00000395880	ENST00000471913		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000310564	ENST00000325590		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000310564	ENST00000356264		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000310564	ENST00000428293		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-intron	ENST00000310564	ENST00000471913		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000223336	ENST00000325590		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000223336	ENST00000356264		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-3CDS	ENST00000223336	ENST00000428293		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
5UTR-intron	ENST00000223336	ENST00000471913		TCGA	LD	PRAD	TCGA-TP-A8TV-01A	COA1	chr7	43769028	-	AMPH	chr7	38574611	-
In-frame	ENST00000356309	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000356309	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000356309	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000356309	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
Frame-shit	ENST00000409423	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000409423	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000409423	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000409423	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-3CDS	ENST00000275830	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000275830	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000275830	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000275830	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
In-frame	ENST00000409339	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000409339	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000409339	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000409339	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
Frame-shit	ENST00000449727	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000449727	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000449727	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
5CDS-intron	ENST00000449727	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-3CDS	ENST00000541468	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000541468	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000541468	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000541468	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-3CDS	ENST00000479022	ENST00000393784		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000479022	ENST00000519860		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000479022	ENST00000523291		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
intron-intron	ENST00000479022	ENST00000326654		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	NCAPG2	chr7	158485534	-	ERGIC1	chr5	172362191	+
Frame-shit	ENST00000389698	ENST00000250448		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000389698	ENST00000540786		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000389698	ENST00000545425		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000307138	ENST00000250448		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000307138	ENST00000540786		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000307138	ENST00000545425		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000258840	ENST00000250448		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000258840	ENST00000540786		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000258840	ENST00000545425		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
Frame-shit	ENST00000382366	ENST00000250448		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000382366	ENST00000540786		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000382366	ENST00000545425		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
intron-3CDS	ENST00000554704	ENST00000250448		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
intron-5UTR	ENST00000554704	ENST00000540786		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
intron-5UTR	ENST00000554704	ENST00000545425		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	RALGAPA1	chr14	36277936	-	FOXA1	chr14	38061916	-
5CDS-5UTR	ENST00000260126	ENST00000504531		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	SLCO5A1	chr8	70650275	-	CASC9	chr8	76136593	-
5CDS-5UTR	ENST00000524945	ENST00000504531		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	SLCO5A1	chr8	70650275	-	CASC9	chr8	76136593	-
intron-5UTR	ENST00000530307	ENST00000504531		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	SLCO5A1	chr8	70650275	-	CASC9	chr8	76136593	-
intron-5UTR	ENST00000528658	ENST00000504531		TCGA	LD	PRAD	TCGA-V1-A8MF-01A	SLCO5A1	chr8	70650275	-	CASC9	chr8	76136593	-
5CDS-5UTR	ENST00000376177	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000376177	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000376177	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000376177	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000396172	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000396172	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000396172	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000396172	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000417556	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000417556	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000417556	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000417556	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000458640	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000458640	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000458640	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000458640	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000462421	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000462421	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000462421	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000462421	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000415382	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000415382	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000415382	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415382	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000453105	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000453105	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-5UTR	ENST00000453105	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
5CDS-intron	ENST00000453105	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-5UTR	ENST00000449074	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-5UTR	ENST00000449074	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-5UTR	ENST00000449074	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
3UTR-intron	ENST00000449074	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000552820	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000552820	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000552820	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552820	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000463430	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000463430	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000463430	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000463430	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000438578	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000438578	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000438578	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000438578	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000415689	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000415689	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000415689	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000415689	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000456476	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000456476	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000456476	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456476	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000412106	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000412106	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000412106	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412106	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000547039	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000547039	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000547039	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547039	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000550435	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000550435	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000550435	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550435	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000453488	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000453488	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000453488	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453488	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000453138	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000453138	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000453138	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000453138	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000552288	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000552288	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000552288	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000552288	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000441425	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000441425	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000441425	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000441425	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000456666	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000456666	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000456666	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000456666	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000546633	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000546633	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000546633	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546633	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000483957	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000483957	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000483957	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000483957	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000430703	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000430703	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000430703	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430703	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000416863	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000416863	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000416863	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000416863	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000413678	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000413678	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000413678	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000413678	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000414440	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000414440	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000414440	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000414440	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000547489	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000547489	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000547489	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000547489	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000551031	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000551031	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000551031	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000551031	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000468089	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000468089	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000468089	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000468089	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400293	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400293	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400293	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400293	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400296	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400296	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400296	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400296	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400295	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400295	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000400295	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000400295	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000383508	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000383508	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000383508	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000383508	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548340	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548340	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548340	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548340	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548331	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548331	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548331	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548331	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000495391	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000495391	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000495391	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000495391	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000446341	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000446341	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000446341	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000446341	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548614	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548614	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000548614	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000548614	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000448296	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000448296	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000448296	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000448296	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000412330	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000412330	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000412330	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000412330	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000445218	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000445218	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000445218	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000445218	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000546637	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000546637	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000546637	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000546637	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000489325	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000489325	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000489325	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000489325	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000450987	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000450987	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000450987	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000450987	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000431360	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000431360	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000431360	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000431360	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000430784	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000430784	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000430784	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000430784	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000550217	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000550217	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000550217	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000550217	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000470514	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000470514	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000470514	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000470514	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000549374	ENST00000488324		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000549374	ENST00000399199		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-5UTR	ENST00000549374	ENST00000274853		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000498031		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000444206		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000438815		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000552716		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000491628		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000435929		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000412189		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000548255		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000493833		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000438945		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000455935		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000551049		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000472334		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000451544		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000437121		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000551034		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000465704		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000383573		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000400554		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000550073		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000492746		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000449705		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000443517		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000551784		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000487859		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
intron-intron	ENST00000549374	ENST00000435006		TCGA	LD	PRAD	TCGA-V1-A8MG-01A	DDX39B	chr6	31506540	-	PPP1R18	chr6	30647166	-
In-frame	ENST00000263881	ENST00000414007		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
Frame-shit	ENST00000263881	ENST00000419187		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
5CDS-intron	ENST00000263881	ENST00000471256		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000437545	ENST00000414007		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000437545	ENST00000419187		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-intron	ENST00000437545	ENST00000471256		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
In-frame	ENST00000341681	ENST00000414007		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
Frame-shit	ENST00000341681	ENST00000419187		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
5CDS-intron	ENST00000341681	ENST00000471256		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
In-frame	ENST00000484274	ENST00000414007		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
Frame-shit	ENST00000484274	ENST00000419187		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
5CDS-intron	ENST00000484274	ENST00000471256		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000536018	ENST00000414007		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000536018	ENST00000419187		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-intron	ENST00000536018	ENST00000471256		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000474502	ENST00000414007		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000474502	ENST00000419187		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-intron	ENST00000474502	ENST00000471256		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	MAP4K3	chr2	39664033	-	SRGAP2	chr1	206557369	+
intron-3CDS	ENST00000460934	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000460934	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
intron-intron	ENST00000460934	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000367145	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000367145	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8MJ-01A	SLC45A3	chr1	205649522	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
Frame-shit	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5CDS-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8MK-01A	TMPRSS2	chr21	42870046	-	ERG	chr21	39817544	-
In-frame	ENST00000379672	ENST00000586700		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
Frame-shit	ENST00000379672	ENST00000300618		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
In-frame	ENST00000340825	ENST00000586700		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
Frame-shit	ENST00000340825	ENST00000300618		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
In-frame	ENST00000262444	ENST00000586700		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
Frame-shit	ENST00000262444	ENST00000300618		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
intron-3CDS	ENST00000578087	ENST00000586700		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
intron-3CDS	ENST00000578087	ENST00000300618		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	ARHGAP44	chr17	12862214	+	C17orf78	chr17	35746181	+
5UTR-3CDS	ENST00000438493	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000438493	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000438493	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-intron	ENST00000438493	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000452682	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000452682	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000452682	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-intron	ENST00000452682	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
3UTR-3CDS	ENST00000498586	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
3UTR-3CDS	ENST00000498586	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
3UTR-3CDS	ENST00000498586	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
3UTR-intron	ENST00000498586	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000430396	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000430396	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000430396	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-intron	ENST00000430396	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000374087	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000374087	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000374087	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-intron	ENST00000374087	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000414907	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000414907	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-3CDS	ENST00000414907	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
5UTR-intron	ENST00000414907	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000344348	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000344348	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000344348	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-intron	ENST00000344348	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000374082	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000374082	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000374082	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-intron	ENST00000374082	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000443446	ENST00000379672		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000443446	ENST00000340825		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-3CDS	ENST00000443446	ENST00000262444		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
intron-intron	ENST00000443446	ENST00000578087		TCGA	LD	PRAD	TCGA-V1-A8ML-01A	NCOA4	chr10	51565296	-	ARHGAP44	chr17	12862034	+
Frame-shit	ENST00000356462	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000356462	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000356462	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000356462	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000400345	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000400345	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000400345	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000400345	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000589054	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000589054	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000589054	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-intron	ENST00000589054	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000256832	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000256832	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000256832	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000256832	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000382850	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000382850	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000382850	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000382850	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000256830	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000256830	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000256830	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000256830	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000588516	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000588516	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-3CDS	ENST00000588516	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
intron-intron	ENST00000588516	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000456986	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000456986	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000456986	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000456986	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000435432	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000435432	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000435432	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000435432	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000357895	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000357895	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000357895	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000357895	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000586263	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000586263	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000586263	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000586263	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000456173	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000456173	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000456173	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000456173	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000431212	ENST00000296550		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000431212	ENST00000506325		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
Frame-shit	ENST00000431212	ENST00000302176		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
5CDS-intron	ENST00000431212	ENST00000507694		TCGA	LD	PRAD	TCGA-V1-A8MM-01A	NEDD4L	chr18	56040501	+	DCLK2	chr4	151023630	+
In-frame	ENST00000301015	ENST00000260453		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	PIEZO1	chr16	88851309	-	MNS1	chr15	56756445	-
5CDS-intron	ENST00000301015	ENST00000566386		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	PIEZO1	chr16	88851309	-	MNS1	chr15	56756445	-
intron-3CDS	ENST00000327397	ENST00000260453		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	PIEZO1	chr16	88851309	-	MNS1	chr15	56756445	-
intron-intron	ENST00000327397	ENST00000566386		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	PIEZO1	chr16	88851309	-	MNS1	chr15	56756445	-
In-frame	ENST00000336061	ENST00000261195		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	RASSF3	chr12	65004523	+	GYS2	chr12	21728991	-
In-frame	ENST00000542104	ENST00000261195		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	RASSF3	chr12	65004523	+	GYS2	chr12	21728991	-
3UTR-3CDS	ENST00000540088	ENST00000261195		TCGA	LD	PRAD	TCGA-V1-A8WL-01A	RASSF3	chr12	65004523	+	GYS2	chr12	21728991	-
intron-5UTR	ENST00000385231	ENST00000372390		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000372397		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000315660		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000372383		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000372384		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000372382		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000506081		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385231	ENST00000514426		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000372390		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000372397		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000315660		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000372383		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000372384		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000372382		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000506081		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000385055	ENST00000514426		TCGA	LD	PRAD	TCGA-V1-A8WN-01A	C1orf132	chr1	207989274	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000263238	ENST00000412849		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000263238	ENST00000401392		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000263238	ENST00000264159		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000263238	ENST00000536680		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000536059	ENST00000412849		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000536059	ENST00000401392		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000536059	ENST00000264159		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000536059	ENST00000536680		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000535589	ENST00000412849		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000535589	ENST00000401392		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000535589	ENST00000264159		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
5CDS-5UTR	ENST00000535589	ENST00000536680		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ACTR3	chr2	114699936	+	ZRANB3	chr2	135988497	-
Frame-shit	ENST00000301729	ENST00000335183		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
Frame-shit	ENST00000301729	ENST00000543789		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000301729	ENST00000442975		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000301729	ENST00000458126		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000301729	ENST00000556102		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000301729	ENST00000541304		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-3UTR	ENST00000301729	ENST00000556305		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000301729	ENST00000395577		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
Frame-shit	ENST00000562238	ENST00000335183		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
Frame-shit	ENST00000562238	ENST00000543789		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000562238	ENST00000442975		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000562238	ENST00000458126		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000562238	ENST00000556102		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000562238	ENST00000541304		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-3UTR	ENST00000562238	ENST00000556305		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5CDS-intron	ENST00000562238	ENST00000395577		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-3CDS	ENST00000570258	ENST00000335183		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-3CDS	ENST00000570258	ENST00000543789		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-intron	ENST00000570258	ENST00000442975		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-intron	ENST00000570258	ENST00000458126		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-intron	ENST00000570258	ENST00000556102		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-intron	ENST00000570258	ENST00000541304		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-3UTR	ENST00000570258	ENST00000556305		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
5UTR-intron	ENST00000570258	ENST00000395577		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ECI1	chr16	2301317	-	CDKN3	chr14	54868242	+
In-frame	ENST00000354429	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
5CDS-intron	ENST00000354429	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
intron-3CDS	ENST00000574255	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
intron-intron	ENST00000574255	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
In-frame	ENST00000356683	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
5CDS-intron	ENST00000356683	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
In-frame	ENST00000396627	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
5CDS-intron	ENST00000396627	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
In-frame	ENST00000574993	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
5CDS-intron	ENST00000574993	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
In-frame	ENST00000396628	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
5CDS-intron	ENST00000396628	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
intron-3CDS	ENST00000573657	ENST00000356322		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
intron-intron	ENST00000573657	ENST00000270649		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ELP5	chr17	7160357	+	ZNF614	chr19	52516499	-
In-frame	ENST00000261609	ENST00000301204		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	HERC2	chr15	28544548	-	TMEM145	chr19	42818424	+
In-frame	ENST00000261609	ENST00000598766		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	HERC2	chr15	28544548	-	TMEM145	chr19	42818424	+
In-frame	ENST00000261609	ENST00000601020		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	HERC2	chr15	28544548	-	TMEM145	chr19	42818424	+
intron-3CDS	ENST00000563945	ENST00000301204		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	HERC2	chr15	28544548	-	TMEM145	chr19	42818424	+
intron-3CDS	ENST00000563945	ENST00000598766		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	HERC2	chr15	28544548	-	TMEM145	chr19	42818424	+
intron-3CDS	ENST00000563945	ENST00000601020		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	HERC2	chr15	28544548	-	TMEM145	chr19	42818424	+
5UTR-3CDS	ENST00000332149	ENST00000513000		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000332149	ENST00000509777		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000332149	ENST00000262992		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000332149	ENST00000308502		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000332149	ENST00000508116		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000332149	ENST00000507861		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000332149	ENST00000506217		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000332149	ENST00000508084		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000398585	ENST00000513000		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000398585	ENST00000509777		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000398585	ENST00000262992		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000398585	ENST00000308502		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000398585	ENST00000508116		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000398585	ENST00000507861		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000398585	ENST00000506217		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000398585	ENST00000508084		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000458356	ENST00000513000		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000458356	ENST00000509777		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000458356	ENST00000262992		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000458356	ENST00000308502		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-3CDS	ENST00000458356	ENST00000508116		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000458356	ENST00000507861		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000458356	ENST00000506217		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
intron-intron	ENST00000458356	ENST00000508084		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000497881	ENST00000513000		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000497881	ENST00000509777		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000497881	ENST00000262992		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000497881	ENST00000308502		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-3CDS	ENST00000497881	ENST00000508116		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000497881	ENST00000507861		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000497881	ENST00000506217		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
5UTR-intron	ENST00000497881	ENST00000508084		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	TMPRSS2	chr21	42880008	-	INPP4B	chr4	143191927	-
Frame-shit	ENST00000544604	ENST00000559115		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
Frame-shit	ENST00000544604	ENST00000446197		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5CDS-intron	ENST00000544604	ENST00000560171		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5CDS-intron	ENST00000544604	ENST00000396941		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5CDS-intron	ENST00000544604	ENST00000396936		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5UTR-3CDS	ENST00000332811	ENST00000559115		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5UTR-3CDS	ENST00000332811	ENST00000446197		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5UTR-intron	ENST00000332811	ENST00000560171		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5UTR-intron	ENST00000332811	ENST00000396941		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
5UTR-intron	ENST00000332811	ENST00000396936		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-3CDS	ENST00000402174	ENST00000559115		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-3CDS	ENST00000402174	ENST00000446197		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-intron	ENST00000402174	ENST00000560171		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-intron	ENST00000402174	ENST00000396941		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-intron	ENST00000402174	ENST00000396936		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-3CDS	ENST00000406323	ENST00000559115		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-3CDS	ENST00000406323	ENST00000446197		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-intron	ENST00000406323	ENST00000560171		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-intron	ENST00000406323	ENST00000396941		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-intron	ENST00000406323	ENST00000396936		TCGA	LD	PRAD	TCGA-V1-A8WS-01A	ZNRF3	chr22	29280054	+	DCAF11	chr14	24586475	+
intron-3CDS	ENST00000486542	ENST00000358621		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000486542	ENST00000357447		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000486542	ENST00000378503		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000486542	ENST00000342409		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000486542	ENST00000493380		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000486542	ENST00000475141		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000486542	ENST00000492155		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000396900	ENST00000358621		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000396900	ENST00000357447		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000396900	ENST00000378503		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000396900	ENST00000342409		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000396900	ENST00000493380		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000396900	ENST00000475141		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000396900	ENST00000492155		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000341083	ENST00000358621		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000341083	ENST00000357447		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000341083	ENST00000378503		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-3CDS	ENST00000341083	ENST00000342409		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000341083	ENST00000493380		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000341083	ENST00000475141		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
intron-intron	ENST00000341083	ENST00000492155		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000396898	ENST00000358621		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000396898	ENST00000357447		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000396898	ENST00000378503		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000396898	ENST00000342409		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000396898	ENST00000493380		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000396898	ENST00000475141		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000396898	ENST00000492155		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378605	ENST00000358621		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378605	ENST00000357447		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378605	ENST00000378503		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
Frame-shit	ENST00000378605	ENST00000342409		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378605	ENST00000493380		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378605	ENST00000475141		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5CDS-intron	ENST00000378605	ENST00000492155		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	BEND7	chr10	13541739	-	FRMD4A	chr10	13900912	-
5UTR-3CDS	ENST00000497036	ENST00000373764		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
5UTR-intron	ENST00000497036	ENST00000536616		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
5UTR-3UTR	ENST00000497036	ENST00000486801		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-3CDS	ENST00000395780	ENST00000373764		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-intron	ENST00000395780	ENST00000536616		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-3UTR	ENST00000395780	ENST00000486801		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-3CDS	ENST00000215659	ENST00000373764		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-intron	ENST00000215659	ENST00000536616		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-3UTR	ENST00000215659	ENST00000486801		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-3CDS	ENST00000395778	ENST00000373764		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-intron	ENST00000395778	ENST00000536616		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
intron-3UTR	ENST00000395778	ENST00000486801		TCGA	LD	PRAD	TCGA-V1-A8WV-01A	MAPK12	chr22	50685108	-	MORN5	chr9	124962164	+
In-frame	ENST00000323851	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
In-frame	ENST00000323851	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
In-frame	ENST00000323851	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000323851	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
In-frame	ENST00000354944	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
In-frame	ENST00000354944	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
In-frame	ENST00000354944	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000354944	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000521414	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000521414	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000521414	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000521414	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-3CDS	ENST00000537882	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-3CDS	ENST00000537882	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-3CDS	ENST00000537882	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5UTR-intron	ENST00000537882	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
Frame-shit	ENST00000414097	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
Frame-shit	ENST00000414097	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
Frame-shit	ENST00000414097	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-intron	ENST00000414097	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000518176	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000518176	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000518176	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518176	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000522476	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000522476	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000522476	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000522476	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000518066	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000518066	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-3CDS	ENST00000518066	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
intron-intron	ENST00000518066	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	NDRG1	chr8	134292474	-	ERG	chr21	39817543	-
5CDS-5UTR	ENST00000322028	ENST00000397397		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-intron	ENST00000322028	ENST00000397411		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-5UTR	ENST00000322028	ENST00000397396		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-5UTR	ENST00000322028	ENST00000397408		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-5UTR	ENST00000322028	ENST00000397406		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-intron	ENST00000322028	ENST00000409543		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-5UTR	ENST00000322028	ENST00000525201		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-5UTR	ENST00000322028	ENST00000397404		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-5UTR	ENST00000322028	ENST00000346501		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5CDS-intron	ENST00000322028	ENST00000409531		TCGA	LD	PRAD	TCGA-V1-A8WW-01A	POLR2L	chr11	842414	-	TSPAN4	chr11	847201	+
5UTR-5UTR	ENST00000055682	ENST00000373358		TCGA	LD	PRAD	TCGA-V1-A9O5-01A	KIAA2022	chrX	74144718	-	PBDC1	chrX	75392785	+
5UTR-intron	ENST00000055682	ENST00000373357		TCGA	LD	PRAD	TCGA-V1-A9O5-01A	KIAA2022	chrX	74144718	-	PBDC1	chrX	75392785	+
Frame-shit	ENST00000220531	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000220531	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5CDS-intron	ENST00000220531	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567740	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-intron	ENST00000567740	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000567461	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-intron	ENST00000567461	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000562384	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-intron	ENST00000562384	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000566753	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5CDS-intron	ENST00000566753	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-3CDS	ENST00000565216	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
intron-intron	ENST00000565216	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000568816	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-intron	ENST00000568816	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000565323	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5CDS-intron	ENST00000565323	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000565409	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-intron	ENST00000565409	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000456518		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000397174		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000402904		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000361191		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000397171		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000361705		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000326197		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000372595		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000337495		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000372596		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000564765	ENST00000372597		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
5UTR-intron	ENST00000564765	ENST00000472037		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	BLOC1S6	chr15	45884474	+	SCMH1	chr1	41514562	-
Frame-shit	ENST00000257215	ENST00000394818		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	DAGLA	chr11	61491044	+	INCENP	chr11	61917529	+
Frame-shit	ENST00000257215	ENST00000278849		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	DAGLA	chr11	61491044	+	INCENP	chr11	61917529	+
5CDS-intron	ENST00000257215	ENST00000531099		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	DAGLA	chr11	61491044	+	INCENP	chr11	61917529	+
intron-intron	ENST00000409454	ENST00000431635		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45828407	+	EBNA1BP2	chr1	43640716	-
intron-intron	ENST00000409454	ENST00000236051		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45828407	+	EBNA1BP2	chr1	43640716	-
intron-intron	ENST00000409454	ENST00000472982		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45828407	+	EBNA1BP2	chr1	43640716	-
3UTR-3CDS	ENST00000409454	ENST00000437048		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
3UTR-intron	ENST00000409454	ENST00000574029		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
3UTR-intron	ENST00000409454	ENST00000576149		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
3UTR-5UTR	ENST00000409454	ENST00000446250		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
3UTR-intron	ENST00000409454	ENST00000291074		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
3UTR-intron	ENST00000409454	ENST00000571805		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
3UTR-intron	ENST00000409454	ENST00000401468		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	HMGN2P46	chr15	45804647	+	VPS53	chr17	565135	-
Frame-shit	ENST00000367178	ENST00000381486		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367178	ENST00000263834		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367178	ENST00000389825		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367178	ENST00000381483		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367178	ENST00000234142		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367178	ENST00000396123		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
intron-3CDS	ENST00000461219	ENST00000381486		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
intron-intron	ENST00000461219	ENST00000263834		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
intron-intron	ENST00000461219	ENST00000389825		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
intron-intron	ENST00000461219	ENST00000381483		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
intron-intron	ENST00000461219	ENST00000234142		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
intron-intron	ENST00000461219	ENST00000396123		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
Frame-shit	ENST00000417268	ENST00000381486		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000417268	ENST00000263834		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000417268	ENST00000389825		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000417268	ENST00000381483		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000417268	ENST00000234142		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000417268	ENST00000396123		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
Frame-shit	ENST00000367186	ENST00000381486		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367186	ENST00000263834		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367186	ENST00000389825		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367186	ENST00000381483		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367186	ENST00000234142		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
5CDS-intron	ENST00000367186	ENST00000396123		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SCAF8	chr6	155148374	+	GREB1	chr2	11770074	+
Frame-shit	ENST00000261867	ENST00000437048		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000261867	ENST00000574029		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000261867	ENST00000576149		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5CDS-5UTR	ENST00000261867	ENST00000446250		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000261867	ENST00000291074		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000261867	ENST00000571805		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5CDS-intron	ENST00000261867	ENST00000401468		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-3CDS	ENST00000559667	ENST00000437048		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-intron	ENST00000559667	ENST00000574029		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-intron	ENST00000559667	ENST00000576149		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-5UTR	ENST00000559667	ENST00000446250		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-intron	ENST00000559667	ENST00000291074		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-intron	ENST00000559667	ENST00000571805		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
5UTR-intron	ENST00000559667	ENST00000401468		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	SLC30A4	chr15	45814162	-	VPS53	chr17	565135	-
In-frame	ENST00000265351	ENST00000287152		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000394362		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000373213		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000373216		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000229913		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000373215		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000538893		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000541946		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5CDS-intron	ENST00000265351	ENST00000465719		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-3CDS	ENST00000424378	ENST00000287152		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000394362		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000373213		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000373216		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000229913		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000373215		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000538893		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000541946		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
intron-intron	ENST00000424378	ENST00000465719		TCGA	LD	PRAD	TCGA-V1-A9O9-01A	XPO5	chr6	43541217	-	KIF6	chr6	39314302	-
5UTR-3CDS	ENST00000485760	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000485760	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
5UTR-3CDS	ENST00000485760	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
5UTR-5UTR	ENST00000485760	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371236	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371236	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371236	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000371236	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371234	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371234	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371234	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000371234	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000420954	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000420954	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000420954	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000420954	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000439789	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000439789	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000439789	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000439789	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000414851	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000414851	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000414851	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000414851	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371231	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371231	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371231	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000371231	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371230	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371230	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000371230	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000371230	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DAB1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000607628	ENST00000359051		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000607628	ENST00000336307		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000607628	ENST00000415204		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000607628	ENST00000450982		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000607628	ENST00000513170		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000480258	ENST00000359051		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000480258	ENST00000336307		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000480258	ENST00000415204		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000480258	ENST00000450982		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000480258	ENST00000513170		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000606822	ENST00000359051		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000606822	ENST00000336307		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000606822	ENST00000415204		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000606822	ENST00000450982		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000606822	ENST00000513170		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000294241	ENST00000359051		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-3CDS	ENST00000294241	ENST00000336307		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000294241	ENST00000415204		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000294241	ENST00000450982		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
intron-intron	ENST00000294241	ENST00000513170		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	DCP1A	chr3	53319494	-	HYAL3	chr3	50332793	-
Frame-shit	ENST00000371092	ENST00000447632		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000371092	ENST00000413473		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000371092	ENST00000262675		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000371092	ENST00000451380		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000371092	ENST00000371750		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000371092	ENST00000371747		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000371092	ENST00000262676		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000371092	ENST00000530004		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-5UTR	ENST00000371092	ENST00000534098		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000271002	ENST00000447632		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000271002	ENST00000413473		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000271002	ENST00000262675		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000271002	ENST00000451380		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000271002	ENST00000371750		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000271002	ENST00000371747		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000271002	ENST00000262676		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000271002	ENST00000530004		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-5UTR	ENST00000271002	ENST00000534098		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
In-frame	ENST00000283568	ENST00000447632		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
In-frame	ENST00000283568	ENST00000413473		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
In-frame	ENST00000283568	ENST00000262675		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
In-frame	ENST00000283568	ENST00000451380		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
In-frame	ENST00000283568	ENST00000371750		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000283568	ENST00000371747		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000283568	ENST00000262676		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-intron	ENST00000283568	ENST00000530004		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
5CDS-5UTR	ENST00000283568	ENST00000534098		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-3CDS	ENST00000461681	ENST00000447632		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-3CDS	ENST00000461681	ENST00000413473		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-3CDS	ENST00000461681	ENST00000262675		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-3CDS	ENST00000461681	ENST00000451380		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-3CDS	ENST00000461681	ENST00000371750		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-intron	ENST00000461681	ENST00000371747		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-intron	ENST00000461681	ENST00000262676		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-intron	ENST00000461681	ENST00000530004		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
intron-5UTR	ENST00000461681	ENST00000534098		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	ITGB3BP	chr1	63944435	-	TTC39A	chr1	51760183	-
Frame-shit	ENST00000358603	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
Frame-shit	ENST00000358603	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
Frame-shit	ENST00000358603	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
5CDS-5UTR	ENST00000358603	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
Frame-shit	ENST00000371226	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
Frame-shit	ENST00000371226	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
Frame-shit	ENST00000371226	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
5CDS-5UTR	ENST00000371226	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000467063	ENST00000371092		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000467063	ENST00000271002		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-3CDS	ENST00000467063	ENST00000283568		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
intron-5UTR	ENST00000467063	ENST00000461681		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	OMA1	chr1	58971732	-	ITGB3BP	chr1	63920639	-
5CDS-intron	ENST00000288368	ENST00000361488		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	PREX2	chr8	69104760	+	FAM110B	chr8	59101877	+
5CDS-intron	ENST00000288368	ENST00000520369		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	PREX2	chr8	69104760	+	FAM110B	chr8	59101877	+
intron-intron	ENST00000529398	ENST00000361488		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	PREX2	chr8	69104760	+	FAM110B	chr8	59101877	+
intron-intron	ENST00000529398	ENST00000520369		TCGA	LD	PRAD	TCGA-V1-A9OL-01A	PREX2	chr8	69104760	+	FAM110B	chr8	59101877	+
intron-3CDS	ENST00000586702	ENST00000215793		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	DOCK6	chr19	11364315	-	SF3A1	chr22	30742508	-
intron-3CDS	ENST00000586702	ENST00000439242		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	DOCK6	chr19	11364315	-	SF3A1	chr22	30742508	-
Frame-shit	ENST00000294618	ENST00000215793		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	DOCK6	chr19	11364315	-	SF3A1	chr22	30742508	-
Frame-shit	ENST00000294618	ENST00000439242		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	DOCK6	chr19	11364315	-	SF3A1	chr22	30742508	-
intron-3CDS	ENST00000319867	ENST00000215793		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	DOCK6	chr19	11364315	-	SF3A1	chr22	30742508	-
intron-3CDS	ENST00000319867	ENST00000439242		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	DOCK6	chr19	11364315	-	SF3A1	chr22	30742508	-
3UTR-5UTR	ENST00000534336	ENST00000296739		TCGA	LD	PRAD	TCGA-V1-A9OT-01A	MALAT1	chr11	65268285	+	SPZ1	chr5	79615956	+
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9OY-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000025008	ENST00000276480		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000025008	ENST00000522102		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
5UTR-5UTR	ENST00000435644	ENST00000276480		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000435644	ENST00000522102		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
5UTR-5UTR	ENST00000521611	ENST00000276480		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000521611	ENST00000522102		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
intron-5UTR	ENST00000539297	ENST00000276480		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
intron-intron	ENST00000539297	ENST00000522102		TCGA	LD	PRAD	TCGA-V1-A9Z7-01A	RB1CC1	chr8	53626635	-	ST18	chr8	53142637	-
intron-3CDS	ENST00000337179	ENST00000321990		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93774807	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000415493	ENST00000321990		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93774807	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000549992	ENST00000321990		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93774807	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000548662	ENST00000321990		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93774807	+	ATAD5	chr17	29187451	+
intron-3CDS	ENST00000547014	ENST00000321990		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	NUDT4	chr12	93774807	+	ATAD5	chr17	29187451	+
5UTR-3CDS	ENST00000265807	ENST00000518421		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
5UTR-3CDS	ENST00000265807	ENST00000174653		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
5UTR-3CDS	ENST00000265807	ENST00000396926		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
5UTR-intron	ENST00000265807	ENST00000520685		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
5UTR-intron	ENST00000265807	ENST00000517922		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
Frame-shit	ENST00000518040	ENST00000518421		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
Frame-shit	ENST00000518040	ENST00000174653		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
Frame-shit	ENST00000518040	ENST00000396926		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
5CDS-intron	ENST00000518040	ENST00000520685		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
5CDS-intron	ENST00000518040	ENST00000517922		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000519207	ENST00000518421		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000519207	ENST00000174653		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
intron-3CDS	ENST00000519207	ENST00000396926		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
intron-intron	ENST00000519207	ENST00000520685		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
intron-intron	ENST00000519207	ENST00000517922		TCGA	LD	PRAD	TCGA-V1-A9Z8-01A	SH2D4A	chr8	19171334	+	AP3M2	chr8	42015459	+
Frame-shit	ENST00000371514	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000371514	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000371514	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-intron	ENST00000371514	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5UTR-3CDS	ENST00000528311	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5UTR-3UTR	ENST00000528311	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5UTR-3UTR	ENST00000528311	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5UTR-intron	ENST00000528311	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
Frame-shit	ENST00000371509	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000371509	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000371509	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-intron	ENST00000371509	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
Frame-shit	ENST00000407246	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000407246	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000407246	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-intron	ENST00000407246	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
Frame-shit	ENST00000371513	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000371513	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-3UTR	ENST00000371513	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5CDS-intron	ENST00000371513	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3CDS	ENST00000473584	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000473584	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000473584	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-intron	ENST00000473584	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3CDS	ENST00000430330	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000430330	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000430330	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-intron	ENST00000430330	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3CDS	ENST00000408941	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000408941	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000408941	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-intron	ENST00000408941	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3CDS	ENST00000435345	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000435345	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000435345	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-intron	ENST00000435345	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3CDS	ENST00000488965	ENST00000533760		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000488965	ENST00000397957		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-3UTR	ENST00000488965	ENST00000316851		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
intron-intron	ENST00000488965	ENST00000401611		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	SCP2	chr1	53393137	+	NCAM1	chr11	113126596	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-V1-A9ZG-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000380158	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
5CDS-5UTR	ENST00000380158	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
Frame-shit	ENST00000264572	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
5CDS-5UTR	ENST00000264572	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
Frame-shit	ENST00000408927	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
5CDS-5UTR	ENST00000408927	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
3UTR-3CDS	ENST00000512857	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
3UTR-5UTR	ENST00000512857	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
Frame-shit	ENST00000453712	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
5CDS-5UTR	ENST00000453712	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
Frame-shit	ENST00000339360	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
5CDS-5UTR	ENST00000339360	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
Frame-shit	ENST00000408900	ENST00000296417		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
5CDS-5UTR	ENST00000408900	ENST00000529158		TCGA	LD	PRAD	TCGA-V1-A9ZK-01A	RAP1GDS1	chr4	99214666	+	H2AFZ	chr4	100870897	-
Frame-shit	ENST00000356924	ENST00000394071		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
Frame-shit	ENST00000356924	ENST00000286523		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
5CDS-intron	ENST00000356924	ENST00000486739		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
Frame-shit	ENST00000298816	ENST00000394071		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
Frame-shit	ENST00000298816	ENST00000286523		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
5CDS-intron	ENST00000298816	ENST00000486739		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
intron-3CDS	ENST00000557554	ENST00000394071		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
intron-3CDS	ENST00000557554	ENST00000286523		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
intron-intron	ENST00000557554	ENST00000486739		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
intron-3CDS	ENST00000557588	ENST00000394071		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
intron-3CDS	ENST00000557588	ENST00000286523		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
intron-intron	ENST00000557588	ENST00000486739		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	ABCD4	chr14	74759254	-	ELMSAN1	chr14	74189550	-
Frame-shit	ENST00000330386	ENST00000286760		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	EP400	chr12	132479501	+	WHAMM	chr15	83488075	+
Frame-shit	ENST00000389561	ENST00000286760		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	EP400	chr12	132479501	+	WHAMM	chr15	83488075	+
Frame-shit	ENST00000333577	ENST00000286760		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	EP400	chr12	132479501	+	WHAMM	chr15	83488075	+
Frame-shit	ENST00000332482	ENST00000286760		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	EP400	chr12	132479501	+	WHAMM	chr15	83488075	+
Frame-shit	ENST00000389562	ENST00000286760		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	EP400	chr12	132479501	+	WHAMM	chr15	83488075	+
intron-intron	ENST00000302386	ENST00000285968		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000302386	ENST00000440390		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000302386	ENST00000489493		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000577035	ENST00000285968		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000577035	ENST00000440390		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000577035	ENST00000489493		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000571129	ENST00000285968		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000571129	ENST00000440390		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000571129	ENST00000489493		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000571253	ENST00000285968		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000571253	ENST00000440390		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000571253	ENST00000489493		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000573928	ENST00000285968		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000573928	ENST00000440390		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
intron-intron	ENST00000573928	ENST00000489493		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	GABARAP	chr17	7143717	-	NUP205	chr7	135333073	+
In-frame	ENST00000545225	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
5CDS-intron	ENST00000545225	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
In-frame	ENST00000590720	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
5CDS-intron	ENST00000590720	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
3UTR-3CDS	ENST00000541124	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
3UTR-intron	ENST00000541124	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
intron-3CDS	ENST00000592578	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
intron-intron	ENST00000592578	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
In-frame	ENST00000441946	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
5CDS-intron	ENST00000441946	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
In-frame	ENST00000293362	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
5CDS-intron	ENST00000293362	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
In-frame	ENST00000592169	ENST00000376387		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
5CDS-intron	ENST00000592169	ENST00000463709		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	PSME3	chr17	40991397	+	TM9SF2	chr13	100214945	+
5CDS-intron	ENST00000314289	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000314289	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000541204	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000509258	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
3UTR-intron	ENST00000511843	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511859	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000506706	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000543385		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000336727		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000344733		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000382788		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000306648		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000338806		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000508158		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5CDS-intron	ENST00000511600	ENST00000538395		TCGA	LD	PRAD	TCGA-V1-A9ZR-01A	RNF4	chr4	2502465	+	RGS12	chr4	3379897	+
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-VN-A88K-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-3CDS	ENST00000398907	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000398907	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000398907	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398907	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3CDS	ENST00000398905	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000398905	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000398905	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000398905	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3CDS	ENST00000288319	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000288319	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000288319	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000288319	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-3CDS	ENST00000398897	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-5UTR	ENST00000398897	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-3UTR	ENST00000398897	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000398897	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
In-frame	ENST00000398911	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-5UTR	ENST00000398911	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-3UTR	ENST00000398911	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398911	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
Frame-shit	ENST00000398910	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-5UTR	ENST00000398910	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-3UTR	ENST00000398910	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398910	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
Frame-shit	ENST00000417133	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-5UTR	ENST00000417133	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-3UTR	ENST00000417133	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000417133	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
Frame-shit	ENST00000442448	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-5UTR	ENST00000442448	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-3UTR	ENST00000442448	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000442448	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3CDS	ENST00000453032	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000453032	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000453032	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000453032	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
In-frame	ENST00000398919	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-5UTR	ENST00000398919	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-3UTR	ENST00000398919	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5CDS-intron	ENST00000398919	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3CDS	ENST00000429727	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000429727	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000429727	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
intron-intron	ENST00000429727	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-3CDS	ENST00000485493	ENST00000439602		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-5UTR	ENST00000485493	ENST00000474973		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-3UTR	ENST00000485493	ENST00000476222		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000454021		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000486781		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000484321		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000457341		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000476337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000494232		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000434122		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000470276		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000211372		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000477055		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000476288		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000440980		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
5UTR-intron	ENST00000485493	ENST00000497078		TCGA	LD	PRAD	TCGA-VN-A88L-01A	ERG	chr21	39947586	-	RPS18	chr6	33240405	+
Frame-shit	ENST00000225983	ENST00000225992		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000225983	ENST00000591228		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000225983	ENST00000587006		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000393622	ENST00000225992		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000393622	ENST00000591228		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000393622	ENST00000587006		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000336057	ENST00000225992		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000336057	ENST00000591228		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000336057	ENST00000587006		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
In-frame	ENST00000586802	ENST00000225992		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
In-frame	ENST00000586802	ENST00000591228		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
In-frame	ENST00000586802	ENST00000587006		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HDAC5	chr17	42188097	-	PPY	chr17	42018582	-
Frame-shit	ENST00000406875	ENST00000544440		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000406875	ENST00000407578		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000406875	ENST00000357337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
5CDS-5UTR	ENST00000406875	ENST00000360084		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
5CDS-intron	ENST00000406875	ENST00000482517		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000428878	ENST00000544440		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000428878	ENST00000407578		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000428878	ENST00000357337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
5CDS-5UTR	ENST00000428878	ENST00000360084		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
5CDS-intron	ENST00000428878	ENST00000482517		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000342645	ENST00000544440		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000342645	ENST00000407578		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
Frame-shit	ENST00000342645	ENST00000357337		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
5CDS-5UTR	ENST00000342645	ENST00000360084		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
5CDS-intron	ENST00000342645	ENST00000482517		TCGA	LD	PRAD	TCGA-VN-A88L-01A	HIPK2	chr7	139415731	-	MYCBP2	chr13	77732244	-
intron-3CDS	ENST00000296043	ENST00000535401		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000296043	ENST00000535185		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000296043	ENST00000299964		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-5UTR	ENST00000296043	ENST00000541754		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000296043	ENST00000542647		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000296043	ENST00000545255		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-3CDS	ENST00000473602	ENST00000535401		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000473602	ENST00000535185		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000473602	ENST00000299964		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-5UTR	ENST00000473602	ENST00000541754		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000473602	ENST00000542647		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
intron-intron	ENST00000473602	ENST00000545255		TCGA	LD	PRAD	TCGA-VN-A88L-01A	SHROOM3	chr4	77610855	+	NNMT	chr11	114168673	+
Frame-shit	ENST00000284049	ENST00000274382		TCGA	LD	PRAD	TCGA-VN-A88O-01A	CHD1	chr5	98262038	-	LIX1	chr5	96460333	-
intron-3CDS	ENST00000511067	ENST00000274382		TCGA	LD	PRAD	TCGA-VN-A88O-01A	CHD1	chr5	98262038	-	LIX1	chr5	96460333	-
Frame-shit	ENST00000264235	ENST00000264246		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
Frame-shit	ENST00000264235	ENST00000478182		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
5CDS-intron	ENST00000264235	ENST00000383668		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
5CDS-intron	ENST00000264235	ENST00000383669		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
Frame-shit	ENST00000316626	ENST00000264246		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
Frame-shit	ENST00000316626	ENST00000478182		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
5CDS-intron	ENST00000316626	ENST00000383668		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
5CDS-intron	ENST00000316626	ENST00000383669		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
intron-3CDS	ENST00000473886	ENST00000264246		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
intron-3CDS	ENST00000473886	ENST00000478182		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
intron-intron	ENST00000473886	ENST00000383668		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
intron-intron	ENST00000473886	ENST00000383669		TCGA	LD	PRAD	TCGA-VN-A88R-01A	GSK3B	chr3	119720893	-	CD80	chr3	119256265	-
Frame-shit	ENST00000477593	ENST00000264982		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000477593	ENST00000542237		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000477593	ENST00000489254		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000477593	ENST00000484888		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000477593	ENST00000481834		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
5CDS-intron	ENST00000477593	ENST00000478673		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
5CDS-intron	ENST00000477593	ENST00000464035		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-3CDS	ENST00000544716	ENST00000264982		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-3CDS	ENST00000544716	ENST00000542237		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-3CDS	ENST00000544716	ENST00000489254		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-3CDS	ENST00000544716	ENST00000484888		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-3CDS	ENST00000544716	ENST00000481834		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-intron	ENST00000544716	ENST00000478673		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
intron-intron	ENST00000544716	ENST00000464035		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000289153	ENST00000264982		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000289153	ENST00000542237		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000289153	ENST00000489254		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000289153	ENST00000484888		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
Frame-shit	ENST00000289153	ENST00000481834		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
5CDS-intron	ENST00000289153	ENST00000478673		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
5CDS-intron	ENST00000289153	ENST00000464035		TCGA	LD	PRAD	TCGA-VN-A88R-01A	PIK3CB	chr3	138452203	-	CEP70	chr3	138227386	-
5CDS-intron	ENST00000268489	ENST00000537792		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000268489	ENST00000537465		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000268489	ENST00000237353		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000268489	ENST00000355636		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000268489	ENST00000543746		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000397992	ENST00000537792		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000397992	ENST00000537465		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000397992	ENST00000237353		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000397992	ENST00000355636		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
5CDS-intron	ENST00000397992	ENST00000543746		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
intron-intron	ENST00000558842	ENST00000537792		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
intron-intron	ENST00000558842	ENST00000537465		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
intron-intron	ENST00000558842	ENST00000237353		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
intron-intron	ENST00000558842	ENST00000355636		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
intron-intron	ENST00000558842	ENST00000543746		TCGA	LD	PRAD	TCGA-VN-A88R-01A	ZFHX3	chr16	72984368	-	PMFBP1	chr16	72174481	-
intron-3CDS	ENST00000409262	ENST00000300146		TCGA	LD	PRAD	TCGA-VN-A943-01A	TET3	chr2	74230293	+	PATL1	chr11	59426942	-
intron-3CDS	ENST00000216797	ENST00000553443		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000216797	ENST00000476979		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000216797	ENST00000267368		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000216797	ENST00000382320		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000216797	ENST00000554555		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-3CDS	ENST00000557140	ENST00000553443		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557140	ENST00000476979		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557140	ENST00000267368		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557140	ENST00000382320		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557140	ENST00000554555		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-3CDS	ENST00000557389	ENST00000553443		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557389	ENST00000476979		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557389	ENST00000267368		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557389	ENST00000382320		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557389	ENST00000554555		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-3CDS	ENST00000557100	ENST00000553443		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557100	ENST00000476979		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557100	ENST00000267368		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557100	ENST00000382320		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
intron-intron	ENST00000557100	ENST00000554555		TCGA	LD	PRAD	TCGA-VP-A872-01A	NFKBIA	chr14	35872449	-	TTC6	chr14	38259922	+
Frame-shit	ENST00000553443	ENST00000288985		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
5CDS-3UTR	ENST00000553443	ENST00000466840		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
5CDS-intron	ENST00000553443	ENST00000437817		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
5CDS-intron	ENST00000553443	ENST00000407474		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3CDS	ENST00000476979	ENST00000288985		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3UTR	ENST00000476979	ENST00000466840		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000476979	ENST00000437817		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000476979	ENST00000407474		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3CDS	ENST00000267368	ENST00000288985		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3UTR	ENST00000267368	ENST00000466840		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000267368	ENST00000437817		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000267368	ENST00000407474		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3CDS	ENST00000382320	ENST00000288985		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3UTR	ENST00000382320	ENST00000466840		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000382320	ENST00000437817		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000382320	ENST00000407474		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3CDS	ENST00000554555	ENST00000288985		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-3UTR	ENST00000554555	ENST00000466840		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000554555	ENST00000437817		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
intron-intron	ENST00000554555	ENST00000407474		TCGA	LD	PRAD	TCGA-VP-A872-01A	TTC6	chr14	38206939	+	ERCC6L2	chr9	98643151	+
5UTR-3CDS	ENST00000368882	ENST00000282041		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
5UTR-5UTR	ENST00000368882	ENST00000585906		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
In-frame	ENST00000368885	ENST00000282041		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
5CDS-5UTR	ENST00000368885	ENST00000585906		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
In-frame	ENST00000451850	ENST00000282041		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
5CDS-5UTR	ENST00000451850	ENST00000585906		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
In-frame	ENST00000368877	ENST00000282041		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
5CDS-5UTR	ENST00000368877	ENST00000585906		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
intron-3CDS	ENST00000368876	ENST00000282041		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
intron-5UTR	ENST00000368876	ENST00000585906		TCGA	LD	PRAD	TCGA-VP-A875-01A	AMD1	chr6	111196418	+	EPG5	chr18	43479531	-
In-frame	ENST00000355272	ENST00000304372		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000355272	ENST00000562860		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
In-frame	ENST00000356926	ENST00000304372		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000356926	ENST00000562860		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
In-frame	ENST00000350812	ENST00000304372		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000350812	ENST00000562860		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
In-frame	ENST00000345016	ENST00000304372		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
5CDS-intron	ENST00000345016	ENST00000562860		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
intron-3CDS	ENST00000590683	ENST00000304372		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
intron-intron	ENST00000590683	ENST00000562860		TCGA	LD	PRAD	TCGA-VP-A875-01A	AP3D1	chr19	2138618	-	KCTD19	chr16	67354788	-
Frame-shit	ENST00000350026	ENST00000367360		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000350026	ENST00000479265		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000346085	ENST00000367360		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000346085	ENST00000479265		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000367148	ENST00000367360		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000367148	ENST00000479265		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000275248	ENST00000367360		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
Frame-shit	ENST00000275248	ENST00000479265		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
intron-3CDS	ENST00000478761	ENST00000367360		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
intron-3CDS	ENST00000478761	ENST00000479265		TCGA	LD	PRAD	TCGA-VP-A875-01A	ARID1B	chr6	157100605	+	RAET1G	chr6	150240952	-
In-frame	ENST00000337147	ENST00000392185		TCGA	LD	PRAD	TCGA-VP-A875-01A	EZR	chr6	159239114	-	SNX9	chr6	158317859	+
Frame-shit	ENST00000367075	ENST00000392185		TCGA	LD	PRAD	TCGA-VP-A875-01A	EZR	chr6	159239114	-	SNX9	chr6	158317859	+
In-frame	ENST00000392177	ENST00000392185		TCGA	LD	PRAD	TCGA-VP-A875-01A	EZR	chr6	159239114	-	SNX9	chr6	158317859	+
5UTR-3CDS	ENST00000476189	ENST00000392185		TCGA	LD	PRAD	TCGA-VP-A875-01A	EZR	chr6	159239114	-	SNX9	chr6	158317859	+
5UTR-3UTR	ENST00000555181	ENST00000396925		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000555181	ENST00000328796		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000555181	ENST00000572154		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
intron-3UTR	ENST00000554182	ENST00000396925		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
intron-3UTR	ENST00000554182	ENST00000328796		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
intron-3UTR	ENST00000554182	ENST00000572154		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000556095	ENST00000396925		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000556095	ENST00000328796		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000556095	ENST00000572154		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000438650	ENST00000396925		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000438650	ENST00000328796		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5UTR-3UTR	ENST00000438650	ENST00000572154		TCGA	LD	PRAD	TCGA-VP-A875-01A	GSKIP	chr14	96846125	+	CLDN6	chr16	3065182	-
5CDS-intron	ENST00000406337	ENST00000369384		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000406337	ENST00000369383		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000406337	ENST00000472543		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000265713	ENST00000369384		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000265713	ENST00000369383		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000265713	ENST00000472543		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000396930	ENST00000369384		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000396930	ENST00000369383		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000396930	ENST00000472543		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000485568	ENST00000369384		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000485568	ENST00000369383		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-intron	ENST00000485568	ENST00000472543		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6A	chr8	41905896	-	FCGR1B	chr1	149759922	+
5CDS-5UTR	ENST00000372725	ENST00000366472		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372725	ENST00000475978		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372725	ENST00000411742		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-5UTR	ENST00000372724	ENST00000366472		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372724	ENST00000475978		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372724	ENST00000411742		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-5UTR	ENST00000287239	ENST00000366472		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000287239	ENST00000475978		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000287239	ENST00000411742		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-5UTR	ENST00000372714	ENST00000366472		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372714	ENST00000475978		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372714	ENST00000411742		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-5UTR	ENST00000372711	ENST00000366472		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372711	ENST00000475978		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
5CDS-intron	ENST00000372711	ENST00000411742		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
intron-5UTR	ENST00000490365	ENST00000366472		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
intron-intron	ENST00000490365	ENST00000475978		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
intron-intron	ENST00000490365	ENST00000411742		TCGA	LD	PRAD	TCGA-VP-A875-01A	KAT6B	chr10	76603236	+	SH3BP5L	chr1	249120720	-
Frame-shit	ENST00000324695	ENST00000374761		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000324695	ENST00000290101		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000324695	ENST00000374763		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000324695	ENST00000374765		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000324695	ENST00000542643		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
5CDS-intron	ENST00000324695	ENST00000374757		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000433712	ENST00000374761		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000433712	ENST00000290101		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000433712	ENST00000374763		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000433712	ENST00000374765		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000433712	ENST00000542643		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
5CDS-intron	ENST00000433712	ENST00000374757		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000355722	ENST00000374761		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000355722	ENST00000290101		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000355722	ENST00000374763		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000355722	ENST00000374765		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000355722	ENST00000542643		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-intron	ENST00000355722	ENST00000374757		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000409625	ENST00000374761		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000409625	ENST00000290101		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000409625	ENST00000374763		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000409625	ENST00000374765		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000409625	ENST00000542643		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-intron	ENST00000409625	ENST00000374757		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000466594	ENST00000374761		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000466594	ENST00000290101		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000466594	ENST00000374763		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000466594	ENST00000374765		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-3CDS	ENST00000466594	ENST00000542643		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
intron-intron	ENST00000466594	ENST00000374757		TCGA	LD	PRAD	TCGA-VP-A875-01A	TRPM8	chr2	234862663	+	RAP1GAP	chr1	21938293	-
Frame-shit	ENST00000412704	ENST00000503173		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000412704	ENST00000239860		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000412704	ENST00000491049		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000412704	ENST00000379864		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000412704	ENST00000510088		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000412704	ENST00000379862		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000412704	ENST00000239859		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000412704	ENST00000477250		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000376887	ENST00000503173		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000376887	ENST00000239860		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000376887	ENST00000491049		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000376887	ENST00000379864		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000376887	ENST00000510088		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000376887	ENST00000379862		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000376887	ENST00000239859		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000376887	ENST00000477250		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000536256	ENST00000503173		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000536256	ENST00000239860		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000536256	ENST00000491049		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000536256	ENST00000379864		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000536256	ENST00000510088		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000536256	ENST00000379862		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000536256	ENST00000239859		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000536256	ENST00000477250		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000431522	ENST00000503173		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000431522	ENST00000239860		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000431522	ENST00000491049		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
Frame-shit	ENST00000431522	ENST00000379864		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000431522	ENST00000510088		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000431522	ENST00000379862		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000431522	ENST00000239859		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-intron	ENST00000431522	ENST00000477250		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-3CDS	ENST00000538287	ENST00000503173		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-3CDS	ENST00000538287	ENST00000239860		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-3CDS	ENST00000538287	ENST00000491049		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-3CDS	ENST00000538287	ENST00000379864		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-intron	ENST00000538287	ENST00000510088		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-intron	ENST00000538287	ENST00000379862		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-intron	ENST00000538287	ENST00000239859		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
3UTR-intron	ENST00000538287	ENST00000477250		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-3CDS	ENST00000474158	ENST00000503173		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-3CDS	ENST00000474158	ENST00000239860		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-3CDS	ENST00000474158	ENST00000491049		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-3CDS	ENST00000474158	ENST00000379864		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-intron	ENST00000474158	ENST00000510088		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-intron	ENST00000474158	ENST00000379862		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-intron	ENST00000474158	ENST00000239859		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
intron-intron	ENST00000474158	ENST00000477250		TCGA	LD	PRAD	TCGA-VP-A876-01A	ABCC4	chr13	95838955	-	CCDC169	chr13	36801518	-
5CDS-5UTR	ENST00000398344	ENST00000338754		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000398344	ENST00000398110		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000398344	ENST00000403880		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000350608	ENST00000338754		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000350608	ENST00000398110		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000350608	ENST00000403880		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000404092	ENST00000338754		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000404092	ENST00000398110		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000404092	ENST00000403880		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000403754	ENST00000338754		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000403754	ENST00000398110		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000403754	ENST00000403880		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000430101	ENST00000338754		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000430101	ENST00000398110		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
5CDS-5UTR	ENST00000430101	ENST00000403880		TCGA	LD	PRAD	TCGA-VP-A876-01A	DDT	chr22	24315957	-	TPST2	chr22	26940641	-
In-frame	ENST00000268712	ENST00000399273		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
In-frame	ENST00000268712	ENST00000443444		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
In-frame	ENST00000268712	ENST00000456009		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
In-frame	ENST00000268712	ENST00000360524		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
5CDS-intron	ENST00000268712	ENST00000340621		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
5CDS-intron	ENST00000268712	ENST00000436374		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395851	ENST00000399273		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395851	ENST00000443444		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395851	ENST00000456009		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395851	ENST00000360524		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-intron	ENST00000395851	ENST00000340621		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-intron	ENST00000395851	ENST00000436374		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
Frame-shit	ENST00000395857	ENST00000399273		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
Frame-shit	ENST00000395857	ENST00000443444		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
Frame-shit	ENST00000395857	ENST00000456009		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
Frame-shit	ENST00000395857	ENST00000360524		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
5CDS-intron	ENST00000395857	ENST00000340621		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
5CDS-intron	ENST00000395857	ENST00000436374		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395848	ENST00000399273		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395848	ENST00000443444		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395848	ENST00000456009		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000395848	ENST00000360524		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-intron	ENST00000395848	ENST00000340621		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-intron	ENST00000395848	ENST00000436374		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000583226	ENST00000399273		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000583226	ENST00000443444		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000583226	ENST00000456009		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-3CDS	ENST00000583226	ENST00000360524		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-intron	ENST00000583226	ENST00000340621		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
intron-intron	ENST00000583226	ENST00000436374		TCGA	LD	PRAD	TCGA-VP-A876-01A	NCOR1	chr17	15964715	-	CCDC144A	chr17	16664739	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A876-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000340281	ENST00000357731		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000340281	ENST00000306821		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-intron	ENST00000340281	ENST00000434200		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-5UTR	ENST00000340281	ENST00000467479		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000361911	ENST00000357731		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000361911	ENST00000306821		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-intron	ENST00000361911	ENST00000434200		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-5UTR	ENST00000361911	ENST00000467479		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000370447	ENST00000357731		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-3CDS	ENST00000370447	ENST00000306821		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-intron	ENST00000370447	ENST00000434200		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
intron-5UTR	ENST00000370447	ENST00000467479		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
5UTR-3CDS	ENST00000455342	ENST00000357731		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
5UTR-3CDS	ENST00000455342	ENST00000306821		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
5UTR-intron	ENST00000455342	ENST00000434200		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
5UTR-5UTR	ENST00000455342	ENST00000467479		TCGA	LD	PRAD	TCGA-VP-A876-01A	ZNF326	chr1	90470651	+	NEGR1	chr1	72163822	-
5UTR-5UTR	ENST00000360540	ENST00000276480		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000360540	ENST00000522102		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5CDS-5UTR	ENST00000544451	ENST00000276480		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5CDS-intron	ENST00000544451	ENST00000522102		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-5UTR	ENST00000519559	ENST00000276480		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000519559	ENST00000522102		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-5UTR	ENST00000522514	ENST00000276480		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000522514	ENST00000522102		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-5UTR	ENST00000521344	ENST00000276480		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-intron	ENST00000521344	ENST00000522102		TCGA	LD	PRAD	TCGA-VP-A878-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53142637	-
5UTR-3CDS	ENST00000361781	ENST00000332853		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
5UTR-intron	ENST00000361781	ENST00000298454		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
intron-3CDS	ENST00000429490	ENST00000332853		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
intron-intron	ENST00000429490	ENST00000298454		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
intron-3CDS	ENST00000492601	ENST00000332853		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
intron-intron	ENST00000492601	ENST00000298454		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
intron-3CDS	ENST00000361543	ENST00000332853		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
intron-intron	ENST00000361543	ENST00000298454		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SGMS1	chr10	52193236	-	VSTM4	chr10	50227820	-
5CDS-intron	ENST00000392246	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000392246	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000392246	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000392245	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000392245	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000392245	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409368	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409368	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409368	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
intron-intron	ENST00000392244	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
intron-intron	ENST00000392244	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
intron-intron	ENST00000392244	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409712	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409712	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409712	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409181	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409181	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5CDS-intron	ENST00000409181	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000409498	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000409498	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000409498	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000409205	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000409205	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000409205	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000469034	ENST00000407073		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000469034	ENST00000478804		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-intron	ENST00000469034	ENST00000404807		TCGA	LD	PRAD	TCGA-VP-A87B-01A	SUMO1	chr2	203084755	-	MBD5	chr2	148811960	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-VP-A87C-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
In-frame	ENST00000267485	ENST00000336077		TCGA	LD	PRAD	TCGA-VP-A87D-01A	C14orf37	chr14	58598230	-	KIR2DL1	chr19	55290064	+
In-frame	ENST00000267485	ENST00000291633		TCGA	LD	PRAD	TCGA-VP-A87D-01A	C14orf37	chr14	58598230	-	KIR2DL1	chr19	55290064	+
5UTR-3CDS	ENST00000334342	ENST00000336077		TCGA	LD	PRAD	TCGA-VP-A87D-01A	C14orf37	chr14	58598230	-	KIR2DL1	chr19	55290064	+
5UTR-3CDS	ENST00000334342	ENST00000291633		TCGA	LD	PRAD	TCGA-VP-A87D-01A	C14orf37	chr14	58598230	-	KIR2DL1	chr19	55290064	+
Frame-shit	ENST00000400137	ENST00000299543		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000400137	ENST00000075430		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
5CDS-intron	ENST00000400137	ENST00000587623		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000381724	ENST00000299543		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000381724	ENST00000075430		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
5CDS-intron	ENST00000381724	ENST00000587623		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
intron-3CDS	ENST00000460490	ENST00000299543		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
intron-3CDS	ENST00000460490	ENST00000075430		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
intron-intron	ENST00000460490	ENST00000587623		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000381719	ENST00000299543		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000381719	ENST00000075430		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
5CDS-intron	ENST00000381719	ENST00000587623		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000381715	ENST00000299543		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
Frame-shit	ENST00000381715	ENST00000075430		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
5CDS-intron	ENST00000381715	ENST00000587623		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
intron-3CDS	ENST00000439640	ENST00000299543		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
intron-3CDS	ENST00000439640	ENST00000075430		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
intron-intron	ENST00000439640	ENST00000587623		TCGA	LD	PRAD	TCGA-VP-A87D-01A	FKBP1A	chr20	1373478	-	CTDP1	chr18	77455225	+
5CDS-3UTR	ENST00000355237	ENST00000380050		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000355237	ENST00000265741		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000355237	ENST00000406263		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000355237	ENST00000436577		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000355237	ENST00000496279		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000380050		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000265741		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000406263		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000396442	ENST00000436577		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000396442	ENST00000496279		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000380766	ENST00000380050		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000380766	ENST00000265741		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000380766	ENST00000406263		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-3UTR	ENST00000380766	ENST00000436577		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
5CDS-intron	ENST00000380766	ENST00000496279		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000538151	ENST00000380050		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000538151	ENST00000265741		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000538151	ENST00000406263		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000538151	ENST00000436577		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-intron	ENST00000538151	ENST00000496279		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000380050		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000265741		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000406263		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000542132	ENST00000436577		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-intron	ENST00000542132	ENST00000496279		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000380050		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000265741		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000406263		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-3UTR	ENST00000514370	ENST00000436577		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
intron-intron	ENST00000514370	ENST00000496279		TCGA	LD	PRAD	TCGA-VP-A87D-01A	OCLN	chr5	68805646	+	CDK14	chr7	90836480	+
Frame-shit	ENST00000537855	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000537855	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000379096	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000379096	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000518937	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000518937	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5UTR-3CDS	ENST00000519303	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5UTR-3UTR	ENST00000519303	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000517427	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000517427	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000520527	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000520527	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000448733	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000448733	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000379097	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
5CDS-3UTR	ENST00000379097	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
intron-3CDS	ENST00000523395	ENST00000569691		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
intron-3UTR	ENST00000523395	ENST00000570794		TCGA	LD	PRAD	TCGA-VP-A87D-01A	TPD52	chr8	80976713	-	C15orf65	chr15	55710421	+
Frame-shit	ENST00000397843	ENST00000527524		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
Frame-shit	ENST00000397843	ENST00000438375		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
5CDS-intron	ENST00000397843	ENST00000527130		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
Frame-shit	ENST00000356641	ENST00000527524		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
Frame-shit	ENST00000356641	ENST00000438375		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
5CDS-intron	ENST00000356641	ENST00000527130		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
intron-3CDS	ENST00000532993	ENST00000527524		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
intron-3CDS	ENST00000532993	ENST00000438375		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
intron-intron	ENST00000532993	ENST00000527130		TCGA	LD	PRAD	TCGA-VP-A87J-01A	ARHGEF12	chr11	120207984	+	GRIK4	chr11	120811056	+
Frame-shit	ENST00000368321	ENST00000368346		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
Frame-shit	ENST00000368321	ENST00000392403		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
5CDS-intron	ENST00000368321	ENST00000548830		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
Frame-shit	ENST00000368320	ENST00000368346		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
Frame-shit	ENST00000368320	ENST00000392403		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
5CDS-intron	ENST00000368320	ENST00000548830		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
Frame-shit	ENST00000368319	ENST00000368346		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
Frame-shit	ENST00000368319	ENST00000392403		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
5CDS-intron	ENST00000368319	ENST00000548830		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
5UTR-3CDS	ENST00000482337	ENST00000368346		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
5UTR-3CDS	ENST00000482337	ENST00000392403		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
5UTR-intron	ENST00000482337	ENST00000548830		TCGA	LD	PRAD	TCGA-VP-A87J-01A	KIAA0907	chr1	155903424	-	ASH1L	chr1	155429689	-
Frame-shit	ENST00000420470	ENST00000399132		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
Frame-shit	ENST00000420470	ENST00000399127		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
Frame-shit	ENST00000420470	ENST00000399126		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
intron-3CDS	ENST00000508036	ENST00000399132		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
intron-3CDS	ENST00000508036	ENST00000399127		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
intron-3CDS	ENST00000508036	ENST00000399126		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
Frame-shit	ENST00000265154	ENST00000399132		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
Frame-shit	ENST00000265154	ENST00000399127		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
Frame-shit	ENST00000265154	ENST00000399126		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ARHGEF38	chr4	106534664	+	COL25A1	chr4	109767375	-
intron-3CDS	ENST00000495165	ENST00000509793		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
intron-3CDS	ENST00000495165	ENST00000265171		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
intron-intron	ENST00000495165	ENST00000503392		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
intron-intron	ENST00000495165	ENST00000502723		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
In-frame	ENST00000308284	ENST00000509793		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
In-frame	ENST00000308284	ENST00000265171		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
5CDS-intron	ENST00000308284	ENST00000503392		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
5CDS-intron	ENST00000308284	ENST00000502723		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
In-frame	ENST00000464631	ENST00000509793		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
In-frame	ENST00000464631	ENST00000265171		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
5CDS-intron	ENST00000464631	ENST00000503392		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
5CDS-intron	ENST00000464631	ENST00000502723		TCGA	LD	PRAD	TCGA-VP-A87K-01A	SEC16B	chr1	177927269	-	EGF	chr4	110914401	+
Frame-shit	ENST00000448841	ENST00000414691		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
5CDS-intron	ENST00000448841	ENST00000514824		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
5CDS-intron	ENST00000448841	ENST00000229583		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
5CDS-intron	ENST00000448841	ENST00000379413		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
Frame-shit	ENST00000369889	ENST00000414691		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
5CDS-intron	ENST00000369889	ENST00000514824		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
5CDS-intron	ENST00000369889	ENST00000229583		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
5CDS-intron	ENST00000369889	ENST00000379413		TCGA	LD	PRAD	TCGA-VP-A87K-01A	WBP1L	chr10	104557852	+	ADTRP	chr6	11768616	-
intron-5UTR	ENST00000370801	ENST00000306621		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ZZZ3	chr1	78148947	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000370801	ENST00000503860		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ZZZ3	chr1	78148947	-	CXCL11	chr4	76957217	-
5UTR-5UTR	ENST00000370798	ENST00000306621		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ZZZ3	chr1	78148947	-	CXCL11	chr4	76957217	-
5UTR-5UTR	ENST00000370798	ENST00000503860		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ZZZ3	chr1	78148947	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000476275	ENST00000306621		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ZZZ3	chr1	78148947	-	CXCL11	chr4	76957217	-
intron-5UTR	ENST00000476275	ENST00000503860		TCGA	LD	PRAD	TCGA-VP-A87K-01A	ZZZ3	chr1	78148947	-	CXCL11	chr4	76957217	-
In-frame	ENST00000265000	ENST00000457424		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
In-frame	ENST00000265000	ENST00000426172		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
5CDS-intron	ENST00000265000	ENST00000503780		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
5CDS-intron	ENST00000265000	ENST00000296519		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-3CDS	ENST00000512285	ENST00000457424		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-3CDS	ENST00000512285	ENST00000426172		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-intron	ENST00000512285	ENST00000503780		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-intron	ENST00000512285	ENST00000296519		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-3CDS	ENST00000502407	ENST00000457424		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-3CDS	ENST00000502407	ENST00000426172		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-intron	ENST00000502407	ENST00000503780		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
intron-intron	ENST00000502407	ENST00000296519		TCGA	LD	PRAD	TCGA-VP-AA1N-01A	GALNT7	chr4	174225269	+	CEP44	chr4	175252633	+
5CDS-3UTR	ENST00000366690	ENST00000483512		TCGA	LD	PRAD	TCGA-WW-A8ZI-01A	RAB4A	chr1	229434819	+	CNIH3	chr1	224708702	+
5CDS-intron	ENST00000366690	ENST00000272133		TCGA	LD	PRAD	TCGA-WW-A8ZI-01A	RAB4A	chr1	229434819	+	CNIH3	chr1	224708702	+
3UTR-3UTR	ENST00000473894	ENST00000483512		TCGA	LD	PRAD	TCGA-WW-A8ZI-01A	RAB4A	chr1	229434819	+	CNIH3	chr1	224708702	+
3UTR-intron	ENST00000473894	ENST00000272133		TCGA	LD	PRAD	TCGA-WW-A8ZI-01A	RAB4A	chr1	229434819	+	CNIH3	chr1	224708702	+
intron-3CDS	ENST00000308025	ENST00000571730		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000308025	ENST00000541223		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000308025	ENST00000331531		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000308025	ENST00000350690		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000308025	ENST00000545862		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000553182	ENST00000571730		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000553182	ENST00000541223		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000553182	ENST00000331531		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000553182	ENST00000350690		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
intron-3CDS	ENST00000553182	ENST00000545862		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	DDX23	chr12	49229310	-	SLC25A10	chr17	79684818	+
5UTR-3CDS	ENST00000262051	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262051	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262051	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262051	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-intron	ENST00000262051	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000547198	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000547198	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000547198	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000547198	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-intron	ENST00000547198	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262052	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262052	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262052	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000262052	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-intron	ENST00000262052	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000394904	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000394904	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000394904	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000394904	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-intron	ENST00000394904	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000547688	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000547688	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000547688	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000547688	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-intron	ENST00000547688	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000541174	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000541174	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000541174	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000541174	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-intron	ENST00000541174	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000545993	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000545993	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000545993	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000545993	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-intron	ENST00000545993	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000546743	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000546743	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000546743	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-3CDS	ENST00000546743	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5UTR-intron	ENST00000546743	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000549193	ENST00000066544		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000549193	ENST00000531206		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000549193	ENST00000446365		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-3CDS	ENST00000549193	ENST00000527547		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
intron-intron	ENST00000549193	ENST00000528748		TCGA	LD	PRAD	TCGA-X4-A8KQ-01A	SLC11A2	chr12	51420098	-	CDC27	chr17	45206887	-
5CDS-5UTR	ENST00000535741	ENST00000425454		TCGA	LD	PRAD	TCGA-XA-A8JR-01A	LRBA	chr4	151935579	-	TPRG1-AS2	chr3	188956745	-
5CDS-5UTR	ENST00000510413	ENST00000425454		TCGA	LD	PRAD	TCGA-XA-A8JR-01A	LRBA	chr4	151935579	-	TPRG1-AS2	chr3	188956745	-
intron-5UTR	ENST00000503716	ENST00000425454		TCGA	LD	PRAD	TCGA-XA-A8JR-01A	LRBA	chr4	151935579	-	TPRG1-AS2	chr3	188956745	-
5CDS-5UTR	ENST00000357115	ENST00000425454		TCGA	LD	PRAD	TCGA-XA-A8JR-01A	LRBA	chr4	151935579	-	TPRG1-AS2	chr3	188956745	-
5CDS-5UTR	ENST00000507224	ENST00000425454		TCGA	LD	PRAD	TCGA-XA-A8JR-01A	LRBA	chr4	151935579	-	TPRG1-AS2	chr3	188956745	-
intron-3CDS	ENST00000460934	ENST00000332149		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000460934	ENST00000398585		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000460934	ENST00000458356		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000460934	ENST00000497881		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000367145	ENST00000332149		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000367145	ENST00000398585		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-3CDS	ENST00000367145	ENST00000458356		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
intron-intron	ENST00000367145	ENST00000497881		TCGA	LD	PRAD	TCGA-XJ-A83F-01A	SLC45A3	chr1	205628617	-	TMPRSS2	chr21	42866505	-
Frame-shit	ENST00000375856	ENST00000356711		TCGA	LD	PRAD	TCGA-XJ-A83G-01A	IRS2	chr13	110434389	-	MYO16	chr13	109858957	+
5CDS-intron	ENST00000375856	ENST00000251041		TCGA	LD	PRAD	TCGA-XJ-A83G-01A	IRS2	chr13	110434389	-	MYO16	chr13	109858957	+
5CDS-intron	ENST00000375856	ENST00000357550		TCGA	LD	PRAD	TCGA-XJ-A83G-01A	IRS2	chr13	110434389	-	MYO16	chr13	109858957	+
5CDS-intron	ENST00000375856	ENST00000457511		TCGA	LD	PRAD	TCGA-XJ-A83G-01A	IRS2	chr13	110434389	-	MYO16	chr13	109858957	+
5CDS-intron	ENST00000375856	ENST00000467639		TCGA	LD	PRAD	TCGA-XJ-A83G-01A	IRS2	chr13	110434389	-	MYO16	chr13	109858957	+
In-frame	ENST00000570896	ENST00000380358		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000570896	ENST00000358181		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000570896	ENST00000330494		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
5CDS-intron	ENST00000570896	ENST00000570758		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000576812	ENST00000380358		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000576812	ENST00000358181		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000576812	ENST00000330494		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
5CDS-intron	ENST00000576812	ENST00000570758		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000311668	ENST00000380358		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000311668	ENST00000358181		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
In-frame	ENST00000311668	ENST00000330494		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
5CDS-intron	ENST00000311668	ENST00000570758		TCGA	LD	PRAD	TCGA-XJ-A83H-01A	TNK1	chr17	7290776	+	CHD3	chr17	7814782	+
5CDS-5UTR	ENST00000409236	ENST00000263341		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-intron	ENST00000409236	ENST00000491056		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-5UTR	ENST00000356421	ENST00000263341		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-intron	ENST00000356421	ENST00000491056		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-5UTR	ENST00000317233	ENST00000263341		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-intron	ENST00000317233	ENST00000491056		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-5UTR	ENST00000409579	ENST00000263341		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-intron	ENST00000409579	ENST00000491056		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
intron-5UTR	ENST00000483600	ENST00000263341		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
intron-intron	ENST00000483600	ENST00000491056		TCGA	LD	PRAD	TCGA-XJ-A9DI-01A	AFF3	chr2	100343539	-	IL1B	chr2	113594435	-
5CDS-5UTR	ENST00000435504	ENST00000345146		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5CDS-5UTR	ENST00000435504	ENST00000446179		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5CDS-5UTR	ENST00000435504	ENST00000415913		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-5UTR	ENST00000336112	ENST00000345146		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-5UTR	ENST00000336112	ENST00000446179		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-5UTR	ENST00000336112	ENST00000415913		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-5UTR	ENST00000272341	ENST00000345146		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-5UTR	ENST00000272341	ENST00000446179		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-5UTR	ENST00000272341	ENST00000415913		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
intron-5UTR	ENST00000404843	ENST00000345146		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
intron-5UTR	ENST00000404843	ENST00000446179		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
intron-5UTR	ENST00000404843	ENST00000415913		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
intron-5UTR	ENST00000497092	ENST00000345146		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
intron-5UTR	ENST00000497092	ENST00000446179		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
intron-5UTR	ENST00000497092	ENST00000415913		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	ASXL2	chr2	26101035	-	IDH1	chr2	209116291	-
5UTR-3CDS	ENST00000430069	ENST00000298375		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000430069	ENST00000525281		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000430069	ENST00000532248		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000430069	ENST00000334019		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000430069	ENST00000345253		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3CDS	ENST00000457928	ENST00000298375		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000457928	ENST00000525281		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000457928	ENST00000532248		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000457928	ENST00000334019		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
5UTR-3UTR	ENST00000457928	ENST00000345253		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176816254	-	AKR1E2	chr10	4872867	+
intron-3CDS	ENST00000430069	ENST00000297001		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176914909	-	C7orf72	chr7	50143910	+
5UTR-3CDS	ENST00000457928	ENST00000297001		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TBL1XR1	chr3	176914909	-	C7orf72	chr7	50143910	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-XJ-A9DK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000370918	ENST00000298248		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000370918	ENST00000382812		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-intron	ENST00000370918	ENST00000480748		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000304434	ENST00000298248		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000304434	ENST00000382812		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-intron	ENST00000304434	ENST00000480748		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
intron-3CDS	ENST00000542638	ENST00000298248		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
intron-3CDS	ENST00000542638	ENST00000382812		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
intron-intron	ENST00000542638	ENST00000480748		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000541407	ENST00000298248		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000541407	ENST00000382812		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-intron	ENST00000541407	ENST00000480748		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000486973	ENST00000298248		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000486973	ENST00000382812		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-intron	ENST00000486973	ENST00000480748		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000370913	ENST00000298248		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-3CDS	ENST00000370913	ENST00000382812		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-intron	ENST00000370913	ENST00000480748		TCGA	LD	PRAD	TCGA-XJ-A9DQ-01A	ELOVL5	chr6	53213615	-	CRYL1	chr13	21063635	-
5UTR-5UTR	ENST00000377041	ENST00000253451		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	ABHD17B	chr9	74525550	-	CCL25	chr19	8117884	+
5UTR-5UTR	ENST00000377041	ENST00000390669		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	ABHD17B	chr9	74525550	-	CCL25	chr19	8117884	+
5UTR-5UTR	ENST00000377041	ENST00000315626		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	ABHD17B	chr9	74525550	-	CCL25	chr19	8117884	+
5UTR-5UTR	ENST00000333421	ENST00000253451		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	ABHD17B	chr9	74525550	-	CCL25	chr19	8117884	+
5UTR-5UTR	ENST00000333421	ENST00000390669		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	ABHD17B	chr9	74525550	-	CCL25	chr19	8117884	+
5UTR-5UTR	ENST00000333421	ENST00000315626		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	ABHD17B	chr9	74525550	-	CCL25	chr19	8117884	+
Frame-shit	ENST00000431842	ENST00000487349		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
Frame-shit	ENST00000431842	ENST00000389601		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
Frame-shit	ENST00000493960	ENST00000487349		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
Frame-shit	ENST00000493960	ENST00000389601		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
Frame-shit	ENST00000355628	ENST00000487349		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
Frame-shit	ENST00000355628	ENST00000389601		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
intron-3CDS	ENST00000485156	ENST00000487349		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
intron-3CDS	ENST00000485156	ENST00000389601		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	FAM208A	chr3	56667072	-	ASB14	chr3	57323151	-
5CDS-intron	ENST00000421905	ENST00000487394		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
5CDS-intron	ENST00000421905	ENST00000164227		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
5CDS-intron	ENST00000221462	ENST00000487394		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
5CDS-intron	ENST00000221462	ENST00000164227		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
3UTR-intron	ENST00000496125	ENST00000487394		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
3UTR-intron	ENST00000496125	ENST00000164227		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
Frame-shit	ENST00000389698	ENST00000555449		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000389698	ENST00000331299		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000389698	ENST00000557611		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000307138	ENST00000555449		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000307138	ENST00000331299		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000307138	ENST00000557611		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000258840	ENST00000555449		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000258840	ENST00000331299		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000258840	ENST00000557611		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000382366	ENST00000555449		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
Frame-shit	ENST00000382366	ENST00000331299		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
5CDS-5UTR	ENST00000382366	ENST00000557611		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000554704	ENST00000555449		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
intron-3CDS	ENST00000554704	ENST00000331299		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
intron-5UTR	ENST00000554704	ENST00000557611		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	RALGAPA1	chr14	36064840	-	SLC25A21	chr14	37344209	-
In-frame	ENST00000344949	ENST00000323523		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
In-frame	ENST00000344949	ENST00000403410		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
5CDS-intron	ENST00000344949	ENST00000462884		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
In-frame	ENST00000394144	ENST00000323523		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
In-frame	ENST00000394144	ENST00000403410		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
5CDS-intron	ENST00000394144	ENST00000462884		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
3UTR-3CDS	ENST00000486274	ENST00000323523		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
3UTR-3CDS	ENST00000486274	ENST00000403410		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
3UTR-intron	ENST00000486274	ENST00000462884		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
5UTR-3CDS	ENST00000475134	ENST00000323523		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
5UTR-3CDS	ENST00000475134	ENST00000403410		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
5UTR-intron	ENST00000475134	ENST00000462884		TCGA	LD	PRAD	TCGA-XJ-A9DX-01A	TBC1D23	chr3	99998604	+	TMEM45A	chr3	100287666	+
In-frame	ENST00000371930	ENST00000358559		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	ANKRD22	chr10	90585795	-	MSMB	chr10	51555731	-
5CDS-3UTR	ENST00000371930	ENST00000474170		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	ANKRD22	chr10	90585795	-	MSMB	chr10	51555731	-
5CDS-3UTR	ENST00000371930	ENST00000298239		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	ANKRD22	chr10	90585795	-	MSMB	chr10	51555731	-
intron-3CDS	ENST00000476963	ENST00000358559		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	ANKRD22	chr10	90585795	-	MSMB	chr10	51555731	-
intron-3UTR	ENST00000476963	ENST00000474170		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	ANKRD22	chr10	90585795	-	MSMB	chr10	51555731	-
intron-3UTR	ENST00000476963	ENST00000298239		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	ANKRD22	chr10	90585795	-	MSMB	chr10	51555731	-
Frame-shit	ENST00000317568	ENST00000541212		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000317568	ENST00000340175		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000317568	ENST00000261817		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000317568	ENST00000542602		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
intron-3CDS	ENST00000531296	ENST00000541212		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
intron-intron	ENST00000531296	ENST00000340175		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
intron-intron	ENST00000531296	ENST00000261817		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
intron-intron	ENST00000531296	ENST00000542602		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
Frame-shit	ENST00000355991	ENST00000541212		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000355991	ENST00000340175		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000355991	ENST00000261817		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000355991	ENST00000542602		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
Frame-shit	ENST00000416776	ENST00000541212		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000416776	ENST00000340175		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000416776	ENST00000261817		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-intron	ENST00000416776	ENST00000542602		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	FRMD8	chr11	65172539	+	PSMD9	chr12	122353762	+
5CDS-5UTR	ENST00000276681	ENST00000522917		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAL2	chr8	120220844	+	FER1L6	chr8	124968232	+
5CDS-5UTR	ENST00000276681	ENST00000399018		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAL2	chr8	120220844	+	FER1L6	chr8	124968232	+
3UTR-5UTR	ENST00000521748	ENST00000522917		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAL2	chr8	120220844	+	FER1L6	chr8	124968232	+
3UTR-5UTR	ENST00000521748	ENST00000399018		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAL2	chr8	120220844	+	FER1L6	chr8	124968232	+
intron-5UTR	ENST00000280969	ENST00000321442		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
intron-intron	ENST00000280969	ENST00000515791		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
intron-5UTR	ENST00000280969	ENST00000502393		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-5UTR	ENST00000321757	ENST00000321442		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-intron	ENST00000321757	ENST00000515791		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-5UTR	ENST00000321757	ENST00000502393		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-5UTR	ENST00000518095	ENST00000321442		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-intron	ENST00000518095	ENST00000515791		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-5UTR	ENST00000518095	ENST00000502393		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
intron-5UTR	ENST00000521838	ENST00000321442		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
intron-intron	ENST00000521838	ENST00000515791		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
intron-5UTR	ENST00000521838	ENST00000502393		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MAT2B	chr5	162932755	+	SFXN1	chr5	174919098	+
5CDS-5UTR	ENST00000262146	ENST00000357039		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000262146	ENST00000419564		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000262146	ENST00000520103		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000262146	ENST00000522527		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-intron	ENST00000262146	ENST00000520203		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
intron-5UTR	ENST00000517944	ENST00000357039		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
intron-5UTR	ENST00000517944	ENST00000419564		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
intron-5UTR	ENST00000517944	ENST00000520103		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
intron-5UTR	ENST00000517944	ENST00000522527		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
intron-intron	ENST00000517944	ENST00000520203		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000458689	ENST00000357039		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000458689	ENST00000419564		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000458689	ENST00000520103		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000458689	ENST00000522527		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-intron	ENST00000458689	ENST00000520203		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	MTFR1	chr8	66620246	+	PEX2	chr8	77896431	-
5CDS-5UTR	ENST00000323851	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000323851	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000323851	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000354944	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000354944	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000354944	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000521414	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000521414	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000521414	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5UTR-5UTR	ENST00000537882	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5UTR-5UTR	ENST00000537882	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5UTR-5UTR	ENST00000537882	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000414097	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000414097	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000414097	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000518176	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000518176	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000518176	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000522476	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000522476	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000522476	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000518066	ENST00000259523		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000518066	ENST00000377970		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
intron-5UTR	ENST00000518066	ENST00000524013		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NDRG1	chr8	134292478	-	MYC	chr8	128750494	+
5CDS-5UTR	ENST00000366628	ENST00000589721		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-5UTR	ENST00000366628	ENST00000589327		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366628	ENST00000588606		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366628	ENST00000586005		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366628	ENST00000591870		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366628	ENST00000588500		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366628	ENST00000586440		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-5UTR	ENST00000366627	ENST00000589721		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-5UTR	ENST00000366627	ENST00000589327		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366627	ENST00000588606		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366627	ENST00000586005		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366627	ENST00000591870		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366627	ENST00000588500		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5CDS-intron	ENST00000366627	ENST00000586440		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-5UTR	ENST00000490098	ENST00000589721		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-5UTR	ENST00000490098	ENST00000589327		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-intron	ENST00000490098	ENST00000588606		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-intron	ENST00000490098	ENST00000586005		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-intron	ENST00000490098	ENST00000591870		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-intron	ENST00000490098	ENST00000588500		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
intron-intron	ENST00000490098	ENST00000586440		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	NTPCR	chr1	233092189	+	SMIM22	chr16	4844953	+
5UTR-3UTR	ENST00000319592	ENST00000265165		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000319592	ENST00000379951		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000319592	ENST00000438313		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000319592	ENST00000510624		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-intron	ENST00000319592	ENST00000512172		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-5UTR	ENST00000319592	ENST00000503879		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381793	ENST00000265165		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381793	ENST00000379951		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381793	ENST00000438313		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381793	ENST00000510624		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-intron	ENST00000381793	ENST00000512172		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-5UTR	ENST00000381793	ENST00000503879		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381795	ENST00000265165		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381795	ENST00000379951		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381795	ENST00000438313		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000381795	ENST00000510624		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-intron	ENST00000381795	ENST00000512172		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-5UTR	ENST00000381795	ENST00000503879		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000295971	ENST00000265165		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000295971	ENST00000379951		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000295971	ENST00000438313		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-3UTR	ENST00000295971	ENST00000510624		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-intron	ENST00000295971	ENST00000512172		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
5UTR-5UTR	ENST00000295971	ENST00000503879		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000514014	ENST00000265165		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000514014	ENST00000379951		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000514014	ENST00000438313		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000514014	ENST00000510624		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-intron	ENST00000514014	ENST00000512172		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-5UTR	ENST00000514014	ENST00000503879		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000515809	ENST00000265165		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000515809	ENST00000379951		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000515809	ENST00000438313		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000515809	ENST00000510624		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-intron	ENST00000515809	ENST00000512172		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-5UTR	ENST00000515809	ENST00000503879		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	RBM47	chr4	40631413	-	LEF1	chr4	108969907	-
intron-3UTR	ENST00000332149	ENST00000318522		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000332149	ENST00000402711		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000332149	ENST00000482660		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000332149	ENST00000401738		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000332149	ENST00000453191		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-3UTR	ENST00000398585	ENST00000318522		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000398585	ENST00000402711		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000398585	ENST00000482660		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000398585	ENST00000401738		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000398585	ENST00000453191		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-3UTR	ENST00000458356	ENST00000318522		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000458356	ENST00000402711		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000458356	ENST00000482660		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000458356	ENST00000401738		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000458356	ENST00000453191		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-3UTR	ENST00000497881	ENST00000318522		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000497881	ENST00000402711		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000497881	ENST00000482660		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000497881	ENST00000401738		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-intron	ENST00000497881	ENST00000453191		TCGA	LD	PRAD	TCGA-XK-AAIV-01A	TMPRSS2	chr21	42859167	-	EML4	chr2	42558831	+
intron-3CDS	ENST00000250448	ENST00000536774		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000250448	ENST00000327441		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000250448	ENST00000539062		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000250448	ENST00000556451		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000250448	ENST00000396294		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000250448	ENST00000545536		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000250448	ENST00000537471		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-intron	ENST00000250448	ENST00000539174		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000536774		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000327441		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000539062		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000556451		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000396294		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000545536		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000540786	ENST00000537471		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-intron	ENST00000540786	ENST00000539174		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000536774		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000327441		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000539062		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000556451		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000396294		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000545536		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-3CDS	ENST00000545425	ENST00000537471		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
intron-intron	ENST00000545425	ENST00000539174		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	FOXA1	chr14	38060605	-	MIPOL1	chr14	37969113	+
Frame-shit	ENST00000335968	ENST00000284382		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
Frame-shit	ENST00000335968	ENST00000538112		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
Frame-shit	ENST00000335968	ENST00000394113		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
5CDS-intron	ENST00000335968	ENST00000560944		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
intron-3CDS	ENST00000559492	ENST00000284382		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
intron-3CDS	ENST00000559492	ENST00000538112		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
intron-3CDS	ENST00000559492	ENST00000394113		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
intron-intron	ENST00000559492	ENST00000560944		TCGA	LD	PRAD	TCGA-XK-AAJ3-01A	TARSL2	chr15	102224278	-	CERS3	chr15	100996251	-
In-frame	ENST00000315368	ENST00000345843		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000315368	ENST00000342295		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000315368	ENST00000361572		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000315368	ENST00000348160		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000315368	ENST00000355476		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-3UTR	ENST00000315368	ENST00000511401		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-5UTR	ENST00000315368	ENST00000507561		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-5UTR	ENST00000315368	ENST00000504907		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-5UTR	ENST00000315368	ENST00000342320		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000510092	ENST00000345843		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000510092	ENST00000342295		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000510092	ENST00000361572		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000510092	ENST00000348160		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
In-frame	ENST00000510092	ENST00000355476		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-3UTR	ENST00000510092	ENST00000511401		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-5UTR	ENST00000510092	ENST00000507561		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-5UTR	ENST00000510092	ENST00000504907		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
5CDS-5UTR	ENST00000510092	ENST00000342320		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	ANAPC4	chr4	25398521	+	RBPJ	chr4	26407797	+
3UTR-3CDS	ENST00000505350	ENST00000302475		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
3UTR-5UTR	ENST00000505350	ENST00000514701		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
3UTR-5UTR	ENST00000505350	ENST00000515367		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
3UTR-5UTR	ENST00000505350	ENST00000408903		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
5UTR-3CDS	ENST00000457016	ENST00000302475		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
5UTR-5UTR	ENST00000457016	ENST00000514701		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
5UTR-5UTR	ENST00000457016	ENST00000515367		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
5UTR-5UTR	ENST00000457016	ENST00000408903		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-3CDS	ENST00000257430	ENST00000302475		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-5UTR	ENST00000257430	ENST00000514701		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-5UTR	ENST00000257430	ENST00000515367		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-5UTR	ENST00000257430	ENST00000408903		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-3CDS	ENST00000508376	ENST00000302475		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-5UTR	ENST00000508376	ENST00000514701		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-5UTR	ENST00000508376	ENST00000515367		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
intron-5UTR	ENST00000508376	ENST00000408903		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	APC	chr5	112043579	+	MCC	chr5	112487119	-
Frame-shit	ENST00000543155	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000543155	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000543155	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000542150	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
In-frame	ENST00000542150	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000542150	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000229251	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000229251	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000229251	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000539735	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000539735	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000539735	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
intron-3CDS	ENST00000538410	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
intron-3CDS	ENST00000538410	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
intron-3UTR	ENST00000538410	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000534947	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000534947	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000534947	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000534877	ENST00000266546		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
Frame-shit	ENST00000534877	ENST00000537408		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-3UTR	ENST00000534877	ENST00000331148		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	COPS7A	chr12	6839986	+	CLSTN3	chr12	7310085	+
5CDS-5UTR	ENST00000370331	ENST00000462405		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000370331	ENST00000370425		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000370331	ENST00000294696		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000370331	ENST00000370424		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000540033	ENST00000462405		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000540033	ENST00000370425		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000540033	ENST00000294696		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000540033	ENST00000370424		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000543509	ENST00000462405		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000543509	ENST00000370425		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000543509	ENST00000294696		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000543509	ENST00000370424		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000491940	ENST00000462405		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000491940	ENST00000370425		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000491940	ENST00000294696		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-5UTR	ENST00000491940	ENST00000370424		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	EVI5	chr1	93029199	-	HFM1	chr1	91742619	-
5CDS-intron	ENST00000367879	ENST00000354422		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
5CDS-intron	ENST00000367879	ENST00000338353		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
5CDS-intron	ENST00000372212	ENST00000354422		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
5CDS-intron	ENST00000372212	ENST00000338353		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
intron-intron	ENST00000462329	ENST00000354422		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
intron-intron	ENST00000462329	ENST00000338353		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
intron-intron	ENST00000469256	ENST00000354422		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
intron-intron	ENST00000469256	ENST00000338353		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
intron-intron	ENST00000470820	ENST00000354422		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
intron-intron	ENST00000470820	ENST00000338353		TCGA	LD	PRAD	TCGA-XK-AAJA-01A	UCK2	chr1	165797169	+	FAM78B	chr1	166029900	-
Frame-shit	ENST00000271732	ENST00000368985		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000271732	ENST00000448301		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000271732	ENST00000480760		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
Frame-shit	ENST00000540514	ENST00000368985		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000540514	ENST00000448301		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000540514	ENST00000480760		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
intron-3CDS	ENST00000479757	ENST00000368985		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
intron-intron	ENST00000479757	ENST00000448301		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
intron-5UTR	ENST00000479757	ENST00000480760		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	GOLPH3L	chr1	150634290	-	CTSS	chr1	150727626	-
5CDS-3UTR	ENST00000256646	ENST00000453618		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	NOTCH2	chr1	120539620	-	SEC22B	chr1	145103908	-
5CDS-3UTR	ENST00000602566	ENST00000453618		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	NOTCH2	chr1	120539620	-	SEC22B	chr1	145103908	-
intron-3UTR	ENST00000493703	ENST00000453618		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	NOTCH2	chr1	120539620	-	SEC22B	chr1	145103908	-
intron-3CDS	ENST00000374232	ENST00000374855		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115642874	+	ALDOB	chr9	104184186	-
intron-intron	ENST00000374232	ENST00000468981		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115642874	+	ALDOB	chr9	104184186	-
intron-3CDS	ENST00000604751	ENST00000374855		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115642874	+	ALDOB	chr9	104184186	-
intron-intron	ENST00000604751	ENST00000468981		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	SNX30	chr9	115642874	+	ALDOB	chr9	104184186	-
5UTR-3CDS	ENST00000259400	ENST00000259371		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
5UTR-3CDS	ENST00000259400	ENST00000408936		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
5UTR-5UTR	ENST00000259400	ENST00000309989		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
5UTR-3UTR	ENST00000259400	ENST00000487716		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3CDS	ENST00000525640	ENST00000259371		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3CDS	ENST00000525640	ENST00000408936		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-5UTR	ENST00000525640	ENST00000309989		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3UTR	ENST00000525640	ENST00000487716		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3CDS	ENST00000534052	ENST00000259371		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3CDS	ENST00000534052	ENST00000408936		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-5UTR	ENST00000534052	ENST00000309989		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3UTR	ENST00000534052	ENST00000487716		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3CDS	ENST00000525847	ENST00000259371		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3CDS	ENST00000525847	ENST00000408936		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-5UTR	ENST00000525847	ENST00000309989		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
intron-3UTR	ENST00000525847	ENST00000487716		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	STX17	chr9	102668988	+	DAB2IP	chr9	124519292	+
In-frame	ENST00000431232	ENST00000279550		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
In-frame	ENST00000431232	ENST00000228251		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
5CDS-5UTR	ENST00000431232	ENST00000546164		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
intron-3CDS	ENST00000250930	ENST00000279550		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
intron-3CDS	ENST00000250930	ENST00000228251		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
intron-5UTR	ENST00000250930	ENST00000546164		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
intron-3CDS	ENST00000476735	ENST00000279550		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
intron-3CDS	ENST00000476735	ENST00000228251		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
intron-5UTR	ENST00000476735	ENST00000546164		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	TMEM8A	chr16	431701	-	YBX3	chr12	10856747	-
3UTR-intron	ENST00000465952	ENST00000477532		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
3UTR-intron	ENST00000465952	ENST00000357099		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
3UTR-intron	ENST00000465952	ENST00000265224		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
3UTR-intron	ENST00000465952	ENST00000417525		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
3UTR-intron	ENST00000465952	ENST00000433239		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
5UTR-intron	ENST00000255304	ENST00000477532		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
5UTR-intron	ENST00000255304	ENST00000357099		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
5UTR-intron	ENST00000255304	ENST00000265224		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
5UTR-intron	ENST00000255304	ENST00000417525		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
5UTR-intron	ENST00000255304	ENST00000433239		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	USPL1	chr13	31192193	+	ANKRD7	chr7	117899891	+
intron-3CDS	ENST00000279550	ENST00000431232		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
intron-intron	ENST00000279550	ENST00000250930		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
intron-5UTR	ENST00000279550	ENST00000476735		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
Frame-shit	ENST00000228251	ENST00000431232		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
5CDS-intron	ENST00000228251	ENST00000250930		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
5CDS-5UTR	ENST00000228251	ENST00000476735		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
5UTR-3CDS	ENST00000546164	ENST00000431232		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
5UTR-intron	ENST00000546164	ENST00000250930		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
5UTR-5UTR	ENST00000546164	ENST00000476735		TCGA	LD	PRAD	TCGA-XQ-A8TA-01A	YBX3	chr12	10862507	-	TMEM8A	chr16	427848	-
5CDS-5UTR	ENST00000438423	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000438423	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000438423	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000438423	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000438423	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000438423	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000267811	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000267811	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000267811	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000267811	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000267811	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000267811	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000452095	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000452095	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000452095	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000452095	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000452095	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000452095	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000333725	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000333725	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000333725	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000333725	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000333725	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000333725	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000557843	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000557843	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000557843	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000557843	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000557843	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000557843	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
3UTR-5UTR	ENST00000560764	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
3UTR-5UTR	ENST00000560764	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
3UTR-5UTR	ENST00000560764	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
3UTR-5UTR	ENST00000560764	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
3UTR-intron	ENST00000560764	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
3UTR-intron	ENST00000560764	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000543579	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000543579	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000543579	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000543579	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000543579	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000543579	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000537840	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000537840	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000537840	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000537840	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000537840	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000537840	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000343827	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000343827	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000343827	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-5UTR	ENST00000343827	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000343827	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
5CDS-intron	ENST00000343827	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559710	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559710	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559710	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559710	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-intron	ENST00000559710	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-intron	ENST00000559710	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559703	ENST00000348370		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559703	ENST00000434298		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559703	ENST00000559209		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-5UTR	ENST00000559703	ENST00000557998		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-intron	ENST00000559703	ENST00000561186		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
intron-intron	ENST00000559703	ENST00000560080		TCGA	LD	PRAD	TCGA-XQ-A8TB-01A	TCF12	chr15	57526305	+	RNF111	chr15	59323003	+
Frame-shit	ENST00000279873	ENST00000406337		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
Frame-shit	ENST00000279873	ENST00000265713		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
Frame-shit	ENST00000279873	ENST00000396930		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
Frame-shit	ENST00000279873	ENST00000485568		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
In-frame	ENST00000309334	ENST00000406337		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
In-frame	ENST00000309334	ENST00000265713		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
In-frame	ENST00000309334	ENST00000396930		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
In-frame	ENST00000309334	ENST00000485568		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	ARID5B	chr10	63852460	+	KAT6A	chr8	41839472	-
Frame-shit	ENST00000262320	ENST00000541970		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
Frame-shit	ENST00000262320	ENST00000392090		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
Frame-shit	ENST00000262320	ENST00000542896		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-intron	ENST00000262320	ENST00000453163		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-intron	ENST00000262320	ENST00000537445		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-intron	ENST00000262320	ENST00000443345		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
Frame-shit	ENST00000354866	ENST00000541970		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
Frame-shit	ENST00000354866	ENST00000392090		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
Frame-shit	ENST00000354866	ENST00000542896		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-intron	ENST00000354866	ENST00000453163		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-intron	ENST00000354866	ENST00000537445		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-intron	ENST00000354866	ENST00000443345		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
intron-3CDS	ENST00000481769	ENST00000541970		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
intron-3CDS	ENST00000481769	ENST00000392090		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
intron-3CDS	ENST00000481769	ENST00000542896		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
intron-intron	ENST00000481769	ENST00000453163		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
intron-intron	ENST00000481769	ENST00000537445		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
intron-intron	ENST00000481769	ENST00000443345		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	AXIN1	chr16	396148	-	PDCD2	chr6	170888058	-
5CDS-5UTR	ENST00000406337	ENST00000392935		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000406337	ENST00000522572		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000406337	ENST00000521158		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000406337	ENST00000022615		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000265713	ENST00000392935		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000265713	ENST00000522572		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000265713	ENST00000521158		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000265713	ENST00000022615		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000396930	ENST00000392935		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000396930	ENST00000522572		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000396930	ENST00000521158		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000396930	ENST00000022615		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000485568	ENST00000392935		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000485568	ENST00000522572		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000485568	ENST00000521158		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5CDS-5UTR	ENST00000485568	ENST00000022615		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	KAT6A	chr8	41844973	-	VDAC3	chr8	42251363	+
5UTR-3CDS	ENST00000438493	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000438493	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000438493	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000452682	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000452682	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000452682	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
3UTR-3CDS	ENST00000498586	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
3UTR-3CDS	ENST00000498586	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
3UTR-3CDS	ENST00000498586	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000430396	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000430396	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000430396	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000374087	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000374087	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000374087	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000414907	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000414907	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
5UTR-3CDS	ENST00000414907	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000344348	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000344348	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000344348	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000374082	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000374082	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000374082	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000443446	ENST00000313117		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000443446	ENST00000446327		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000443446	ENST00000409276		TCGA	LD	PRAD	TCGA-Y6-A9XI-01A	NCOA4	chr10	51565296	-	SRSF7	chr2	38977336	-
intron-3CDS	ENST00000486542	ENST00000358621		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000486542	ENST00000357447		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000486542	ENST00000378503		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000486542	ENST00000342409		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000486542	ENST00000493380		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000486542	ENST00000475141		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000486542	ENST00000492155		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396900	ENST00000358621		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396900	ENST00000357447		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396900	ENST00000378503		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396900	ENST00000342409		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5CDS-intron	ENST00000396900	ENST00000493380		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5CDS-intron	ENST00000396900	ENST00000475141		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5CDS-intron	ENST00000396900	ENST00000492155		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000341083	ENST00000358621		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000341083	ENST00000357447		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000341083	ENST00000378503		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000341083	ENST00000342409		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000341083	ENST00000493380		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000341083	ENST00000475141		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000341083	ENST00000492155		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396898	ENST00000358621		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396898	ENST00000357447		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396898	ENST00000378503		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
Frame-shit	ENST00000396898	ENST00000342409		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5CDS-intron	ENST00000396898	ENST00000493380		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5CDS-intron	ENST00000396898	ENST00000475141		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5CDS-intron	ENST00000396898	ENST00000492155		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000378605	ENST00000358621		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000378605	ENST00000357447		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000378605	ENST00000378503		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-3CDS	ENST00000378605	ENST00000342409		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000378605	ENST00000493380		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000378605	ENST00000475141		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
intron-intron	ENST00000378605	ENST00000492155		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	BEND7	chr10	13568138	-	FRMD4A	chr10	13838588	-
5UTR-3CDS	ENST00000509176	ENST00000395146		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
5UTR-3CDS	ENST00000509176	ENST00000307808		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
5UTR-intron	ENST00000509176	ENST00000544085		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
5UTR-intron	ENST00000509176	ENST00000511996		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-3CDS	ENST00000333691	ENST00000395146		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-3CDS	ENST00000333691	ENST00000307808		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-intron	ENST00000333691	ENST00000544085		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-intron	ENST00000333691	ENST00000511996		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-3CDS	ENST00000432775	ENST00000395146		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-3CDS	ENST00000432775	ENST00000307808		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-intron	ENST00000432775	ENST00000544085		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-intron	ENST00000432775	ENST00000511996		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-3CDS	ENST00000504150	ENST00000395146		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-3CDS	ENST00000504150	ENST00000307808		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-intron	ENST00000504150	ENST00000544085		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
intron-intron	ENST00000504150	ENST00000511996		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CCSER1	chr4	91048982	+	AFF1	chr4	87967318	+
5CDS-5UTR	ENST00000458535	ENST00000494118		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CMTM8	chr3	32280611	+	ZNF385D	chr3	22210527	-
5CDS-intron	ENST00000458535	ENST00000281523		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CMTM8	chr3	32280611	+	ZNF385D	chr3	22210527	-
5CDS-5UTR	ENST00000307526	ENST00000494118		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CMTM8	chr3	32280611	+	ZNF385D	chr3	22210527	-
5CDS-intron	ENST00000307526	ENST00000281523		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	CMTM8	chr3	32280611	+	ZNF385D	chr3	22210527	-
In-frame	ENST00000205061	ENST00000162330		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-5UTR	ENST00000205061	ENST00000546196		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000566982		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000393422		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000535626		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000538440		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000418647		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000542031		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000420641		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000205061	ENST00000393420		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
In-frame	ENST00000422840	ENST00000162330		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-5UTR	ENST00000422840	ENST00000546196		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000566982		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000393422		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000535626		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000538440		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000418647		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000542031		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000420641		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000422840	ENST00000393420		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
In-frame	ENST00000447066	ENST00000162330		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-5UTR	ENST00000447066	ENST00000546196		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000566982		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000393422		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000535626		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000538440		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000418647		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000542031		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000420641		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-intron	ENST00000447066	ENST00000393420		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	GLG1	chr16	74640555	-	BCAR1	chr16	75276988	-
5CDS-3UTR	ENST00000391976	ENST00000540900		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000391976	ENST00000584423		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000391976	ENST00000247026		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000391976	ENST00000479218		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000310931	ENST00000540900		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000310931	ENST00000584423		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000310931	ENST00000247026		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000310931	ENST00000479218		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000391975	ENST00000540900		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000391975	ENST00000584423		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000391975	ENST00000247026		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000391975	ENST00000479218		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-3UTR	ENST00000427183	ENST00000540900		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000427183	ENST00000584423		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000427183	ENST00000247026		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
5CDS-intron	ENST00000427183	ENST00000479218		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
intron-3UTR	ENST00000476807	ENST00000540900		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
intron-intron	ENST00000476807	ENST00000584423		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
intron-intron	ENST00000476807	ENST00000247026		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
intron-intron	ENST00000476807	ENST00000479218		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	HDLBP	chr2	242169248	-	NSRP1	chr17	28499560	+
Frame-shit	ENST00000314067	ENST00000261973		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000314067	ENST00000540173		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000314067	ENST00000527432		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000314067	ENST00000525321		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000314067	ENST00000526754		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
5CDS-intron	ENST00000314067	ENST00000532483		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000238628	ENST00000261973		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000238628	ENST00000540173		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000238628	ENST00000527432		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000238628	ENST00000525321		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000238628	ENST00000526754		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
5CDS-intron	ENST00000238628	ENST00000532483		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000556742	ENST00000261973		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000556742	ENST00000540173		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000556742	ENST00000527432		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000556742	ENST00000525321		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
Frame-shit	ENST00000556742	ENST00000526754		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
5CDS-intron	ENST00000556742	ENST00000532483		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
3UTR-3CDS	ENST00000553338	ENST00000261973		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
3UTR-3CDS	ENST00000553338	ENST00000540173		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
3UTR-3CDS	ENST00000553338	ENST00000527432		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
3UTR-3CDS	ENST00000553338	ENST00000525321		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
3UTR-3CDS	ENST00000553338	ENST00000526754		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
3UTR-intron	ENST00000553338	ENST00000532483		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	IFT43	chr14	76455320	+	RBM25	chr14	73543027	+
In-frame	ENST00000259037	ENST00000454872		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
5CDS-3UTR	ENST00000259037	ENST00000473253		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
In-frame	ENST00000493866	ENST00000454872		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
5CDS-3UTR	ENST00000493866	ENST00000473253		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
In-frame	ENST00000472629	ENST00000454872		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
5CDS-3UTR	ENST00000472629	ENST00000473253		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
3UTR-3CDS	ENST00000473500	ENST00000454872		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
3UTR-3UTR	ENST00000473500	ENST00000473253		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NDUFB5	chr3	179336309	+	NAALADL2	chr3	174951721	+
3UTR-3CDS	ENST00000540900	ENST00000430627		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
3UTR-3CDS	ENST00000540900	ENST00000447079		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
3UTR-intron	ENST00000540900	ENST00000559545		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
In-frame	ENST00000584423	ENST00000430627		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
In-frame	ENST00000584423	ENST00000447079		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
5CDS-intron	ENST00000584423	ENST00000559545		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
In-frame	ENST00000247026	ENST00000430627		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
In-frame	ENST00000247026	ENST00000447079		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
5CDS-intron	ENST00000247026	ENST00000559545		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
In-frame	ENST00000479218	ENST00000430627		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
In-frame	ENST00000479218	ENST00000447079		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
5CDS-intron	ENST00000479218	ENST00000559545		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	NSRP1	chr17	28443881	+	CDK12	chr17	37646810	+
3UTR-3CDS	ENST00000295462	ENST00000403729		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
3UTR-intron	ENST00000295462	ENST00000482406		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
3UTR-intron	ENST00000295462	ENST00000404191		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
3UTR-intron	ENST00000295462	ENST00000346652		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
3UTR-intron	ENST00000295462	ENST00000307333		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
3UTR-intron	ENST00000295462	ENST00000295465		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
In-frame	ENST00000512733	ENST00000403729		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000512733	ENST00000482406		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000512733	ENST00000404191		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000512733	ENST00000346652		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000512733	ENST00000307333		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000512733	ENST00000295465		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5UTR-3CDS	ENST00000515541	ENST00000403729		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5UTR-intron	ENST00000515541	ENST00000482406		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5UTR-intron	ENST00000515541	ENST00000404191		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5UTR-intron	ENST00000515541	ENST00000346652		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5UTR-intron	ENST00000515541	ENST00000307333		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5UTR-intron	ENST00000515541	ENST00000295465		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
In-frame	ENST00000380645	ENST00000403729		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000380645	ENST00000482406		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000380645	ENST00000404191		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000380645	ENST00000346652		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000380645	ENST00000307333		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
5CDS-intron	ENST00000380645	ENST00000295465		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PAQR3	chr4	79847675	-	ANTXR2	chr4	80906017	-
intron-3CDS	ENST00000408388	ENST00000303545		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	PVT1	chr8	128806980	+	RNF139	chr8	125498072	+
5UTR-3CDS	ENST00000341084	ENST00000251810		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
5UTR-3CDS	ENST00000341084	ENST00000395912		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
5UTR-intron	ENST00000341084	ENST00000519317		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
5UTR-intron	ENST00000341084	ENST00000519962		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-3CDS	ENST00000519449	ENST00000251810		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-3CDS	ENST00000519449	ENST00000395912		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-intron	ENST00000519449	ENST00000519317		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-intron	ENST00000519449	ENST00000519962		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-3CDS	ENST00000523255	ENST00000251810		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-3CDS	ENST00000523255	ENST00000395912		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-intron	ENST00000523255	ENST00000519317		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-intron	ENST00000523255	ENST00000519962		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	RNF19A	chr8	101322095	-	RRM2B	chr8	103231175	-
intron-3CDS	ENST00000367469	ENST00000397944		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-5UTR	ENST00000367469	ENST00000367493		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-intron	ENST00000367469	ENST00000523560		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-intron	ENST00000367469	ENST00000367488		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
In-frame	ENST00000367467	ENST00000397944		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
5CDS-5UTR	ENST00000367467	ENST00000367493		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
5CDS-intron	ENST00000367467	ENST00000523560		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
5CDS-intron	ENST00000367467	ENST00000367488		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-3CDS	ENST00000470750	ENST00000397944		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-5UTR	ENST00000470750	ENST00000367493		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-intron	ENST00000470750	ENST00000523560		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-intron	ENST00000470750	ENST00000367488		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	SASH1	chr6	148664359	+	ADGB	chr6	146965909	+
intron-3CDS	ENST00000312026	ENST00000342376		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	ZNF417	chr19	58420754	-	KIR2DL3	chr19	55250953	+
intron-3CDS	ENST00000312026	ENST00000434419		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	ZNF417	chr19	58420754	-	KIR2DL3	chr19	55250953	+
intron-3CDS	ENST00000536263	ENST00000342376		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	ZNF417	chr19	58420754	-	KIR2DL3	chr19	55250953	+
intron-3CDS	ENST00000536263	ENST00000434419		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	ZNF417	chr19	58420754	-	KIR2DL3	chr19	55250953	+
intron-3CDS	ENST00000595559	ENST00000342376		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	ZNF417	chr19	58420754	-	KIR2DL3	chr19	55250953	+
intron-3CDS	ENST00000595559	ENST00000434419		TCGA	LD	PRAD	TCGA-YJ-A8SW-01A	ZNF417	chr19	58420754	-	KIR2DL3	chr19	55250953	+
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8HK-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
Frame-shit	ENST00000372725	ENST00000251166		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372725	ENST00000539968		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372725	ENST00000537233		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372725	ENST00000574025		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372725	ENST00000423908		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-intron	ENST00000372725	ENST00000577144		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
Frame-shit	ENST00000372724	ENST00000251166		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372724	ENST00000539968		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372724	ENST00000537233		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372724	ENST00000574025		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372724	ENST00000423908		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-intron	ENST00000372724	ENST00000577144		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
Frame-shit	ENST00000287239	ENST00000251166		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000287239	ENST00000539968		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000287239	ENST00000537233		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000287239	ENST00000574025		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000287239	ENST00000423908		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-intron	ENST00000287239	ENST00000577144		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
Frame-shit	ENST00000372714	ENST00000251166		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372714	ENST00000539968		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372714	ENST00000537233		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372714	ENST00000574025		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372714	ENST00000423908		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-intron	ENST00000372714	ENST00000577144		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
Frame-shit	ENST00000372711	ENST00000251166		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372711	ENST00000539968		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372711	ENST00000537233		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372711	ENST00000574025		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-5UTR	ENST00000372711	ENST00000423908		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
5CDS-intron	ENST00000372711	ENST00000577144		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
3UTR-3CDS	ENST00000490365	ENST00000251166		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
3UTR-5UTR	ENST00000490365	ENST00000539968		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
3UTR-5UTR	ENST00000490365	ENST00000537233		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
3UTR-5UTR	ENST00000490365	ENST00000574025		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
3UTR-5UTR	ENST00000490365	ENST00000423908		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
3UTR-intron	ENST00000490365	ENST00000577144		TCGA	LD	PRAD	TCGA-YL-A8HL-01A	KAT6B	chr10	76785007	+	CORO7	chr16	4445340	-
intron-3CDS	ENST00000380110	ENST00000003084		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000380110	ENST00000454343		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-intron	ENST00000380110	ENST00000608965		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000223951	ENST00000003084		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000223951	ENST00000454343		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-intron	ENST00000223951	ENST00000608965		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000544538	ENST00000003084		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-3CDS	ENST00000544538	ENST00000454343		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
intron-intron	ENST00000544538	ENST00000608965		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000397312	ENST00000003084		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000397312	ENST00000454343		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-intron	ENST00000397312	ENST00000608965		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000380117	ENST00000003084		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000380117	ENST00000454343		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-intron	ENST00000380117	ENST00000608965		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000462649	ENST00000003084		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000462649	ENST00000454343		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-intron	ENST00000462649	ENST00000608965		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	ELAVL2	chr9	23825804	-	CFTR	chr7	117304742	+
5UTR-3CDS	ENST00000361205	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-3CDS	ENST00000361205	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000361205	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000361205	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000361205	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000361205	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-intron	ENST00000361205	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-3CDS	ENST00000399848	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-3CDS	ENST00000399848	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000399848	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000399848	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000399848	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000399848	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-intron	ENST00000399848	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-3CDS	ENST00000359446	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-3CDS	ENST00000359446	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000359446	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000359446	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000359446	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-5UTR	ENST00000359446	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
5UTR-intron	ENST00000359446	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000587757	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000587757	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000587757	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000587757	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000587757	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000587757	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-intron	ENST00000587757	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000585931	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000585931	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000585931	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000585931	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000585931	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000585931	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-intron	ENST00000585931	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000586765	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000586765	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000586765	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000586765	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000586765	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000586765	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-intron	ENST00000586765	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000590308	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000590308	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000590308	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000590308	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000590308	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000590308	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-intron	ENST00000590308	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000592991	ENST00000465357		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000592991	ENST00000539517		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000592991	ENST00000267422		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000592991	ENST00000344429		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000592991	ENST00000547619		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000592991	ENST00000574031		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
intron-intron	ENST00000592991	ENST00000551754		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	LDLRAD4	chr18	13278187	+	NOVA1	chr14	26949349	-
Frame-shit	ENST00000539437	ENST00000268125		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	MFGE8	chr15	89448988	-	RLBP1	chr15	89754040	-
Frame-shit	ENST00000268151	ENST00000268125		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	MFGE8	chr15	89448988	-	RLBP1	chr15	89754040	-
Frame-shit	ENST00000268150	ENST00000268125		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	MFGE8	chr15	89448988	-	RLBP1	chr15	89754040	-
In-frame	ENST00000566497	ENST00000268125		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	MFGE8	chr15	89448988	-	RLBP1	chr15	89754040	-
Frame-shit	ENST00000542878	ENST00000268125		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	MFGE8	chr15	89448988	-	RLBP1	chr15	89754040	-
intron-3CDS	ENST00000559997	ENST00000268125		TCGA	LD	PRAD	TCGA-YL-A8HM-01A	MFGE8	chr15	89448988	-	RLBP1	chr15	89754040	-
5CDS-5UTR	ENST00000409236	ENST00000225983		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409236	ENST00000393622		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409236	ENST00000336057		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409236	ENST00000586802		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000356421	ENST00000225983		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000356421	ENST00000393622		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000356421	ENST00000336057		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000356421	ENST00000586802		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317233	ENST00000225983		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317233	ENST00000393622		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317233	ENST00000336057		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317233	ENST00000586802		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409579	ENST00000225983		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409579	ENST00000393622		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409579	ENST00000336057		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000409579	ENST00000586802		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000483600	ENST00000225983		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000483600	ENST00000393622		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000483600	ENST00000336057		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000483600	ENST00000586802		TCGA	LD	PRAD	TCGA-YL-A8HO-01A	AFF3	chr2	100623094	-	HDAC5	chr17	42195072	-
Frame-shit	ENST00000344157	ENST00000356291		TCGA	LD	PRAD	TCGA-YL-A8S8-01A	YTHDC1	chr4	69204001	-	TMPRSS11F	chr4	68939727	-
Frame-shit	ENST00000355665	ENST00000356291		TCGA	LD	PRAD	TCGA-YL-A8S8-01A	YTHDC1	chr4	69204001	-	TMPRSS11F	chr4	68939727	-
Frame-shit	ENST00000579690	ENST00000356291		TCGA	LD	PRAD	TCGA-YL-A8S8-01A	YTHDC1	chr4	69204001	-	TMPRSS11F	chr4	68939727	-
intron-3CDS	ENST00000552105	ENST00000356291		TCGA	LD	PRAD	TCGA-YL-A8S8-01A	YTHDC1	chr4	69204001	-	TMPRSS11F	chr4	68939727	-
intron-3CDS	ENST00000550485	ENST00000356291		TCGA	LD	PRAD	TCGA-YL-A8S8-01A	YTHDC1	chr4	69204001	-	TMPRSS11F	chr4	68939727	-
Frame-shit	ENST00000314163	ENST00000307602		TCGA	LD	PRAD	TCGA-YL-A8S9-01A	GPR89B	chr1	147416212	+	HOOK3	chr8	42780700	+
5CDS-intron	ENST00000314163	ENST00000524839		TCGA	LD	PRAD	TCGA-YL-A8S9-01A	GPR89B	chr1	147416212	+	HOOK3	chr8	42780700	+
intron-3CDS	ENST00000488603	ENST00000307602		TCGA	LD	PRAD	TCGA-YL-A8S9-01A	GPR89B	chr1	147416212	+	HOOK3	chr8	42780700	+
intron-intron	ENST00000488603	ENST00000524839		TCGA	LD	PRAD	TCGA-YL-A8S9-01A	GPR89B	chr1	147416212	+	HOOK3	chr8	42780700	+
In-frame	ENST00000300086	ENST00000370079		TCGA	LD	PRAD	TCGA-YL-A8S9-01A	TERF2IP	chr16	75682450	+	AMY1C	chr1	104301091	+
5CDS-3UTR	ENST00000355280	ENST00000598286		TCGA	LD	PRAD	TCGA-YL-A8SB-01A	MINK1	chr17	4736935	+	SIGLEC17P	chr19	51670632	+
5CDS-3UTR	ENST00000347992	ENST00000598286		TCGA	LD	PRAD	TCGA-YL-A8SB-01A	MINK1	chr17	4736935	+	SIGLEC17P	chr19	51670632	+
5CDS-3UTR	ENST00000453408	ENST00000598286		TCGA	LD	PRAD	TCGA-YL-A8SB-01A	MINK1	chr17	4736935	+	SIGLEC17P	chr19	51670632	+
5CDS-intron	ENST00000307128	ENST00000273077		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	MYOZ2	chr4	120057756	+	PNKD	chr2	219182678	+
5CDS-3UTR	ENST00000307128	ENST00000472650		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	MYOZ2	chr4	120057756	+	PNKD	chr2	219182678	+
5CDS-intron	ENST00000307128	ENST00000248451		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	MYOZ2	chr4	120057756	+	PNKD	chr2	219182678	+
5CDS-intron	ENST00000307128	ENST00000258362		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	MYOZ2	chr4	120057756	+	PNKD	chr2	219182678	+
5CDS-intron	ENST00000307128	ENST00000436005		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	MYOZ2	chr4	120057756	+	PNKD	chr2	219182678	+
In-frame	ENST00000371514	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000371514	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000371514	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000371514	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000528311	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000528311	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000528311	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000528311	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000371509	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000371509	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000371509	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000371509	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000407246	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000407246	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000407246	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000407246	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000371513	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000371513	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000371513	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000371513	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000473584	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000473584	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000473584	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000473584	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000430330	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000430330	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000430330	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000430330	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000408941	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000408941	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000408941	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000408941	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000435345	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000435345	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
In-frame	ENST00000435345	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
5CDS-intron	ENST00000435345	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000488965	ENST00000332149		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000488965	ENST00000398585		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-3CDS	ENST00000488965	ENST00000458356		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
intron-intron	ENST00000488965	ENST00000497881		TCGA	LD	PRAD	TCGA-YL-A8SC-01A	SCP2	chr1	53504718	+	TMPRSS2	chr21	42861520	-
Frame-shit	ENST00000321617	ENST00000334456		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
In-frame	ENST00000321617	ENST00000376450		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000321617	ENST00000444035		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
In-frame	ENST00000321617	ENST00000544570		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000321617	ENST00000418754		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000321617	ENST00000540345		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000321617	ENST00000540380		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000433559	ENST00000334456		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000433559	ENST00000376450		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000433559	ENST00000444035		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000433559	ENST00000544570		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000433559	ENST00000418754		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-3CDS	ENST00000433559	ENST00000540345		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
intron-intron	ENST00000433559	ENST00000540380		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000581870	ENST00000334456		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
In-frame	ENST00000581870	ENST00000376450		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000581870	ENST00000444035		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
In-frame	ENST00000581870	ENST00000544570		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000581870	ENST00000418754		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
Frame-shit	ENST00000581870	ENST00000540345		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
5CDS-intron	ENST00000581870	ENST00000540380		TCGA	LD	PRAD	TCGA-YL-A8SF-01A	CASKIN2	chr17	73509792	-	PDE2A	chr11	72353370	-
In-frame	ENST00000220849	ENST00000395386		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
In-frame	ENST00000220849	ENST00000337920		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
In-frame	ENST00000220849	ENST00000395376		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5CDS-5UTR	ENST00000220849	ENST00000220847		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5CDS-5UTR	ENST00000220849	ENST00000395390		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5CDS-5UTR	ENST00000220849	ENST00000395379		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
Frame-shit	ENST00000519030	ENST00000395386		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
Frame-shit	ENST00000519030	ENST00000337920		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
Frame-shit	ENST00000519030	ENST00000395376		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5CDS-5UTR	ENST00000519030	ENST00000220847		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5CDS-5UTR	ENST00000519030	ENST00000395390		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5CDS-5UTR	ENST00000519030	ENST00000395379		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5UTR-3CDS	ENST00000519517	ENST00000395386		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5UTR-3CDS	ENST00000519517	ENST00000337920		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5UTR-3CDS	ENST00000519517	ENST00000395376		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5UTR-5UTR	ENST00000519517	ENST00000220847		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5UTR-5UTR	ENST00000519517	ENST00000395390		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
5UTR-5UTR	ENST00000519517	ENST00000395379		TCGA	LD	PRAD	TCGA-YL-A8SH-01B	EIF3E	chr8	109240496	-	PHF20L1	chr8	133806656	+
3UTR-3CDS	ENST00000409454	ENST00000295797		TCGA	LD	PRAD	TCGA-YL-A8SJ-01B	HMGN2P46	chr15	45806161	+	PRKCI	chr3	170009642	+
intron-intron	ENST00000448464	ENST00000442583		TCGA	LD	PRAD	TCGA-YL-A8SJ-01B	TP53INP1	chr8	95942768	-	CCDC144B	chr17	18457580	-
intron-intron	ENST00000342697	ENST00000442583		TCGA	LD	PRAD	TCGA-YL-A8SJ-01B	TP53INP1	chr8	95942768	-	CCDC144B	chr17	18457580	-
intron-intron	ENST00000378776	ENST00000442583		TCGA	LD	PRAD	TCGA-YL-A8SJ-01B	TP53INP1	chr8	95942768	-	CCDC144B	chr17	18457580	-
5CDS-5UTR	ENST00000508064	ENST00000359470		TCGA	LD	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207874963	+	C1orf116	chr1	207201024	-
5CDS-intron	ENST00000508064	ENST00000461135		TCGA	LD	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207874963	+	C1orf116	chr1	207201024	-
intron-5UTR	ENST00000530905	ENST00000359470		TCGA	LD	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207874963	+	C1orf116	chr1	207201024	-
intron-intron	ENST00000530905	ENST00000461135		TCGA	LD	PRAD	TCGA-YL-A8SL-01B	CR1L	chr1	207874963	+	C1orf116	chr1	207201024	-
intron-3CDS	ENST00000521015	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
intron-3CDS	ENST00000521015	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
intron-intron	ENST00000521015	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
Frame-shit	ENST00000256398	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
Frame-shit	ENST00000256398	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5CDS-intron	ENST00000256398	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000542181	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000542181	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-intron	ENST00000542181	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
3UTR-3CDS	ENST00000523760	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
3UTR-3CDS	ENST00000523760	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
3UTR-intron	ENST00000523760	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000524103	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000524103	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-intron	ENST00000524103	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000537665	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000537665	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-intron	ENST00000537665	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000380353	ENST00000537916		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000380353	ENST00000240093		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-intron	ENST00000380353	ENST00000517911		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	ELP3	chr8	27950750	+	FZD3	chr8	28378155	+
5UTR-3CDS	ENST00000422057	ENST00000448430		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000422057	ENST00000380679		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000422057	ENST00000457155		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000422057	ENST00000348518		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000422057	ENST00000321149		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000317318	ENST00000448430		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000317318	ENST00000380679		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000317318	ENST00000457155		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000317318	ENST00000348518		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000317318	ENST00000321149		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000423270	ENST00000448430		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000423270	ENST00000380679		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000423270	ENST00000457155		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000423270	ENST00000348518		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
Frame-shit	ENST00000423270	ENST00000321149		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000559447	ENST00000448430		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000559447	ENST00000380679		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000559447	ENST00000457155		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000559447	ENST00000348518		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
5UTR-3CDS	ENST00000559447	ENST00000321149		TCGA	LD	PRAD	TCGA-YL-A8SO-01B	RFX7	chr15	56535323	-	DYX1C1	chr15	55742565	-
intron-5UTR	ENST00000503238	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000503238	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000358350	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000537810	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000264319	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000507711	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5UTR-5UTR	ENST00000514783	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000507873	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508632		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000508069		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
intron-5UTR	ENST00000506685	ENST00000273860		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	FRYL	chr4	48686690	-	OCIAD2	chr4	48906628	-
5CDS-intron	ENST00000262189	ENST00000483933		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
5CDS-5UTR	ENST00000262189	ENST00000302103		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
5CDS-intron	ENST00000355193	ENST00000483933		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
5CDS-5UTR	ENST00000355193	ENST00000302103		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
intron-intron	ENST00000485655	ENST00000483933		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
intron-5UTR	ENST00000485655	ENST00000302103		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
intron-intron	ENST00000485241	ENST00000483933		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
intron-5UTR	ENST00000485241	ENST00000302103		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	KMT2C	chr7	151949024	-	FUT9	chr6	96651024	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000548946	ENST00000258530		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-5UTR	ENST00000548946	ENST00000539978		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-intron	ENST00000548946	ENST00000546731		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-intron	ENST00000548946	ENST00000551662		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-intron	ENST00000548946	ENST00000549573		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
In-frame	ENST00000318066	ENST00000258530		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-5UTR	ENST00000318066	ENST00000539978		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000318066	ENST00000546731		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000318066	ENST00000551662		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000318066	ENST00000549573		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
In-frame	ENST00000550657	ENST00000258530		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-5UTR	ENST00000550657	ENST00000539978		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000550657	ENST00000546731		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000550657	ENST00000551662		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000550657	ENST00000549573		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-3CDS	ENST00000549833	ENST00000258530		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-5UTR	ENST00000549833	ENST00000539978		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-intron	ENST00000549833	ENST00000546731		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-intron	ENST00000549833	ENST00000551662		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
intron-intron	ENST00000549833	ENST00000549573		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
In-frame	ENST00000552442	ENST00000258530		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-5UTR	ENST00000552442	ENST00000539978		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000552442	ENST00000546731		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000552442	ENST00000551662		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5CDS-intron	ENST00000552442	ENST00000549573		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	UBE2N	chr12	93835631	-	APPL2	chr12	105623001	-
5UTR-5UTR	ENST00000329665	ENST00000339093		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	ZSCAN22	chr19	58838480	+	NOSIP	chr19	50063949	-
5UTR-5UTR	ENST00000329665	ENST00000596358		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	ZSCAN22	chr19	58838480	+	NOSIP	chr19	50063949	-
5UTR-5UTR	ENST00000329665	ENST00000391853		TCGA	LD	PRAD	TCGA-YL-A8SP-01B	ZSCAN22	chr19	58838480	+	NOSIP	chr19	50063949	-
intron-3UTR	ENST00000319592	ENST00000343295		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000319592	ENST00000502986		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-intron	ENST00000319592	ENST00000389060		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
5UTR-3UTR	ENST00000381793	ENST00000343295		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
5UTR-3UTR	ENST00000381793	ENST00000502986		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
5UTR-intron	ENST00000381793	ENST00000389060		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000381795	ENST00000343295		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000381795	ENST00000502986		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-intron	ENST00000381795	ENST00000389060		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000295971	ENST00000343295		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000295971	ENST00000502986		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-intron	ENST00000295971	ENST00000389060		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000514014	ENST00000343295		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000514014	ENST00000502986		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-intron	ENST00000514014	ENST00000389060		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000515809	ENST00000343295		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3UTR	ENST00000515809	ENST00000502986		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-intron	ENST00000515809	ENST00000389060		TCGA	LD	PRAD	TCGA-YL-A8SR-01B	RBM47	chr4	40516533	-	IDO2	chr8	39806668	+
intron-3CDS	ENST00000553443	ENST00000343060		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000553443	ENST00000355633		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000476979	ENST00000343060		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000476979	ENST00000355633		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000267368	ENST00000343060		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000267368	ENST00000355633		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000382320	ENST00000343060		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000382320	ENST00000355633		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000554555	ENST00000343060		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
intron-3CDS	ENST00000554555	ENST00000355633		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	TTC6	chr14	38065213	+	HOXA1	chr7	27134974	-
5CDS-intron	ENST00000275358	ENST00000495032		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	VWDE	chr7	12406983	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000275358	ENST00000434063		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	VWDE	chr7	12406983	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000275358	ENST00000429611		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	VWDE	chr7	12406983	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000275358	ENST00000425358		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	VWDE	chr7	12406983	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000275358	ENST00000428939		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	VWDE	chr7	12406983	-	HOTAIRM1	chr7	27139398	+
5CDS-3UTR	ENST00000275358	ENST00000593300		TCGA	LD	PRAD	TCGA-YL-A9WH-01A	VWDE	chr7	12406983	-	HOTAIRM1	chr7	27139398	+
In-frame	ENST00000370010	ENST00000338432		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000370010	ENST00000377854		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000370010	ENST00000377848		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000370010	ENST00000543080		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000370010	ENST00000543201		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000370014	ENST00000338432		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000370014	ENST00000377854		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000370014	ENST00000377848		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000370014	ENST00000543080		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000370014	ENST00000543201		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000447266	ENST00000338432		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000447266	ENST00000377854		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000447266	ENST00000377848		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000447266	ENST00000543080		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000447266	ENST00000543201		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000541192	ENST00000338432		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000541192	ENST00000377854		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000541192	ENST00000377848		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-intron	ENST00000541192	ENST00000543080		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-intron	ENST00000541192	ENST00000543201		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000327284	ENST00000338432		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000327284	ENST00000377854		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
In-frame	ENST00000327284	ENST00000377848		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000327284	ENST00000543080		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
5CDS-intron	ENST00000327284	ENST00000543201		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000436928	ENST00000338432		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000436928	ENST00000377854		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000436928	ENST00000377848		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-intron	ENST00000436928	ENST00000543080		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-intron	ENST00000436928	ENST00000543201		TCGA	LD	PRAD	TCGA-YL-A9WJ-01A	SENP6	chr6	76333674	+	ACACB	chr12	109680240	+
intron-3CDS	ENST00000261168	ENST00000525566		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000261168	ENST00000429002		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000503506		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000526691		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000388854		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000354940		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000526390		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000529546		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000540716		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000524698		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000542918		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000378070		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000397736		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000427956		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000526950		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000261168	ENST00000526006		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000543189	ENST00000525566		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000543189	ENST00000429002		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000503506		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000526691		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000388854		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000354940		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000526390		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000529546		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000540716		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000524698		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000542918		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000378070		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000397736		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000427956		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000526950		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000543189	ENST00000526006		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000536444	ENST00000525566		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000536444	ENST00000429002		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000503506		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000526691		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000388854		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000354940		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000526390		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000529546		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000540716		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000524698		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000542918		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000378070		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000397736		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000427956		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000526950		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000536444	ENST00000526006		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
Frame-shit	ENST00000544627	ENST00000525566		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
Frame-shit	ENST00000544627	ENST00000429002		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000503506		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000526691		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000388854		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000354940		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000526390		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000529546		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000540716		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000524698		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000542918		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000378070		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000397736		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000427956		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000526950		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
5CDS-intron	ENST00000544627	ENST00000526006		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-3CDS	ENST00000541654	ENST00000525566		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-3CDS	ENST00000541654	ENST00000429002		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000503506		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000526691		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000388854		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000354940		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000526390		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000529546		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000540716		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000524698		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000542918		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000378070		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000397736		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000427956		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000526950		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
3UTR-intron	ENST00000541654	ENST00000526006		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000540793	ENST00000525566		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-3CDS	ENST00000540793	ENST00000429002		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000503506		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526691		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000388854		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000354940		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526390		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000529546		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000540716		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000524698		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000542918		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000378070		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000397736		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000427956		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526950		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
intron-intron	ENST00000540793	ENST00000526006		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ATF7IP	chr12	14538334	+	TXNRD1	chr12	104645305	+
In-frame	ENST00000311128	ENST00000476844		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	DENND6A	chr3	57678509	-	FHIT	chr3	59908140	-
In-frame	ENST00000311128	ENST00000492590		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	DENND6A	chr3	57678509	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000311128	ENST00000466788		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	DENND6A	chr3	57678509	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000311128	ENST00000468189		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	DENND6A	chr3	57678509	-	FHIT	chr3	59908140	-
5CDS-5UTR	ENST00000311128	ENST00000341848		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	DENND6A	chr3	57678509	-	FHIT	chr3	59908140	-
In-frame	ENST00000521662	ENST00000398238		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000521662	ENST00000225282		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000521662	ENST00000575068		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000521688	ENST00000398238		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000521688	ENST00000225282		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000521688	ENST00000575068		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000520147	ENST00000398238		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000520147	ENST00000225282		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
In-frame	ENST00000520147	ENST00000575068		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
3UTR-3CDS	ENST00000522407	ENST00000398238		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
3UTR-3CDS	ENST00000522407	ENST00000225282		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
3UTR-3CDS	ENST00000522407	ENST00000575068		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	ENY2	chr8	110352792	+	NSF	chr17	44751780	+
Frame-shit	ENST00000319540	ENST00000403729		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000319540	ENST00000482406		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000319540	ENST00000404191		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000319540	ENST00000346652		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000319540	ENST00000307333		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000319540	ENST00000295465		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
Frame-shit	ENST00000273908	ENST00000403729		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000273908	ENST00000482406		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000273908	ENST00000404191		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000273908	ENST00000346652		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000273908	ENST00000307333		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000273908	ENST00000295465		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
Frame-shit	ENST00000282709	ENST00000403729		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000282709	ENST00000482406		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000282709	ENST00000404191		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000282709	ENST00000346652		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000282709	ENST00000307333		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5CDS-intron	ENST00000282709	ENST00000295465		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	SCD5	chr4	83719459	-	ANTXR2	chr4	80940130	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000360605	ENST00000592765		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
intron-intron	ENST00000360605	ENST00000361680		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
intron-intron	ENST00000360605	ENST00000355868		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5CDS-intron	ENST00000542441	ENST00000592765		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5CDS-intron	ENST00000542441	ENST00000361680		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5CDS-intron	ENST00000542441	ENST00000355868		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5UTR-intron	ENST00000392271	ENST00000592765		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5UTR-intron	ENST00000392271	ENST00000361680		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5UTR-intron	ENST00000392271	ENST00000355868		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5CDS-intron	ENST00000312051	ENST00000592765		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5CDS-intron	ENST00000312051	ENST00000361680		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
5CDS-intron	ENST00000312051	ENST00000355868		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
intron-intron	ENST00000574176	ENST00000592765		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
intron-intron	ENST00000574176	ENST00000361680		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
intron-intron	ENST00000574176	ENST00000355868		TCGA	LD	PRAD	TCGA-YL-A9WL-01A	URI1	chr19	30433571	+	WDR88	chr19	33655103	+
In-frame	ENST00000225737	ENST00000268719		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
5CDS-intron	ENST00000225737	ENST00000376345		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
5CDS-intron	ENST00000225737	ENST00000579871		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
In-frame	ENST00000395536	ENST00000268719		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
5CDS-intron	ENST00000395536	ENST00000376345		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
5CDS-intron	ENST00000395536	ENST00000579871		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
intron-3CDS	ENST00000572155	ENST00000268719		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
intron-intron	ENST00000572155	ENST00000376345		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
intron-intron	ENST00000572155	ENST00000579871		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	AKAP10	chr17	19839599	-	GID4	chr17	17962182	+
Frame-shit	ENST00000609104	ENST00000380191		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000609104	ENST00000479928		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000609104	ENST00000380132		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
5CDS-intron	ENST00000609104	ENST00000380181		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-3CDS	ENST00000277575	ENST00000380191		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000277575	ENST00000479928		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000277575	ENST00000380132		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000277575	ENST00000380181		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-3CDS	ENST00000379237	ENST00000380191		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000379237	ENST00000479928		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000379237	ENST00000380132		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000379237	ENST00000380181		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-3CDS	ENST00000443016	ENST00000380191		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000443016	ENST00000479928		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000443016	ENST00000380132		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000443016	ENST00000380181		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-3CDS	ENST00000609853	ENST00000380191		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000609853	ENST00000479928		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000609853	ENST00000380132		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-intron	ENST00000609853	ENST00000380181		TCGA	LD	PRAD	TCGA-YL-A9WY-01A	USP6NL	chr10	11639630	-	GDI2	chr10	5842668	-
intron-3CDS	ENST00000408388	ENST00000248484		TCGA	LD	PRAD	TCGA-ZG-A8QW-01A	PVT1	chr8	128903244	+	TNFRSF19	chr13	24242119	+
intron-3CDS	ENST00000408388	ENST00000382263		TCGA	LD	PRAD	TCGA-ZG-A8QW-01A	PVT1	chr8	128903244	+	TNFRSF19	chr13	24242119	+
intron-3CDS	ENST00000408388	ENST00000403372		TCGA	LD	PRAD	TCGA-ZG-A8QW-01A	PVT1	chr8	128903244	+	TNFRSF19	chr13	24242119	+
intron-intron	ENST00000408388	ENST00000464735		TCGA	LD	PRAD	TCGA-ZG-A8QW-01A	PVT1	chr8	128903244	+	TNFRSF19	chr13	24242119	+
intron-intron	ENST00000408388	ENST00000382258		TCGA	LD	PRAD	TCGA-ZG-A8QW-01A	PVT1	chr8	128903244	+	TNFRSF19	chr13	24242119	+
intron-intron	ENST00000398810	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000398810	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000398810	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000439599	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000439599	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000439599	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000398812	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000398812	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000398812	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000335866	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000335866	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000335866	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000402578	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000402578	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000402578	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000403097	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000403097	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000403097	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000406641	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000406641	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000406641	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000357271	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000357271	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000357271	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000407526	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000407526	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000407526	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000401949	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000401949	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5CDS-intron	ENST00000401949	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000402497	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000402497	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000402497	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000483819	ENST00000491129		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000483819	ENST00000046087		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
intron-intron	ENST00000483819	ENST00000419417		TCGA	LD	PRAD	TCGA-ZG-A8QX-01A	GRB10	chr7	50799969	-	ZPBP	chr7	49977218	-
5UTR-3CDS	ENST00000425346	ENST00000288221		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-intron	ENST00000425346	ENST00000486496		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-3CDS	ENST00000424512	ENST00000288221		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-intron	ENST00000424512	ENST00000486496		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-3CDS	ENST00000232508	ENST00000288221		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-intron	ENST00000232508	ENST00000486496		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-3CDS	ENST00000418577	ENST00000288221		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
5UTR-intron	ENST00000418577	ENST00000486496		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
3UTR-3CDS	ENST00000419046	ENST00000288221		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
3UTR-intron	ENST00000419046	ENST00000486496		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	CYB561D2	chr3	50388413	+	ERC2	chr3	56053061	-
Frame-shit	ENST00000288221	ENST00000296149		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
Frame-shit	ENST00000288221	ENST00000446787		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
Frame-shit	ENST00000288221	ENST00000439305		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
5CDS-intron	ENST00000288221	ENST00000460502		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
intron-3CDS	ENST00000486496	ENST00000296149		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
intron-3CDS	ENST00000486496	ENST00000446787		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
intron-3CDS	ENST00000486496	ENST00000439305		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
intron-intron	ENST00000486496	ENST00000460502		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	ERC2	chr3	56026085	-	ELP6	chr3	47539922	-
5UTR-intron	ENST00000332687	ENST00000429124		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	RLIM	chrX	73834257	-	FTX	chrX	73350782	-
5UTR-intron	ENST00000349225	ENST00000429124		TCGA	LD	PRAD	TCGA-ZG-A8QY-01A	RLIM	chrX	73834257	-	FTX	chrX	73350782	-
Frame-shit	ENST00000444610	ENST00000458659		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000444610	ENST00000501704		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000444610	ENST00000261489		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000444610	ENST00000460842		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-3CDS	ENST00000218981	ENST00000458659		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000218981	ENST00000501704		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000218981	ENST00000261489		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000218981	ENST00000460842		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-3CDS	ENST00000280056	ENST00000458659		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000280056	ENST00000501704		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000280056	ENST00000261489		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000280056	ENST00000460842		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-3CDS	ENST00000490949	ENST00000458659		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000490949	ENST00000501704		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000490949	ENST00000261489		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000490949	ENST00000460842		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	DHRS12	chr13	52378190	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000297431	ENST00000413953		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-5UTR	ENST00000297431	ENST00000347140		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000297431	ENST00000358907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-5UTR	ENST00000297431	ENST00000402412		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000297431	ENST00000441731		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000297431	ENST00000403821		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000297431	ENST00000546843		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000545943	ENST00000413953		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-5UTR	ENST00000545943	ENST00000347140		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000545943	ENST00000358907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-5UTR	ENST00000545943	ENST00000402412		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000545943	ENST00000441731		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000545943	ENST00000403821		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000545943	ENST00000546843		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000447452	ENST00000413953		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-5UTR	ENST00000447452	ENST00000347140		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000447452	ENST00000358907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-5UTR	ENST00000447452	ENST00000402412		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000447452	ENST00000441731		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000447452	ENST00000403821		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5CDS-intron	ENST00000447452	ENST00000546843		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-intron	ENST00000485726	ENST00000413953		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-5UTR	ENST00000485726	ENST00000347140		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-intron	ENST00000485726	ENST00000358907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-5UTR	ENST00000485726	ENST00000402412		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-intron	ENST00000485726	ENST00000441731		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-intron	ENST00000485726	ENST00000403821		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-intron	ENST00000485726	ENST00000546843		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	ORC5	chr7	103835591	-	R3HDM2	chr12	57789601	-
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5CDS-5UTR	ENST00000458659	ENST00000444614		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
5CDS-5UTR	ENST00000458659	ENST00000476570		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
5CDS-intron	ENST00000458659	ENST00000281508		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
intron-5UTR	ENST00000501704	ENST00000444614		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
intron-5UTR	ENST00000501704	ENST00000476570		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
intron-intron	ENST00000501704	ENST00000281508		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
intron-5UTR	ENST00000261489	ENST00000444614		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
intron-5UTR	ENST00000261489	ENST00000476570		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
intron-intron	ENST00000261489	ENST00000281508		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
5UTR-5UTR	ENST00000460842	ENST00000444614		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
5UTR-5UTR	ENST00000460842	ENST00000476570		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
5UTR-intron	ENST00000460842	ENST00000281508		TCGA	LD	PRAD	TCGA-ZG-A8QZ-01A	TSC22D1	chr13	45147299	-	CCDC122	chr13	44449063	-
5CDS-intron	ENST00000589222	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000407086	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000390652	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000408905	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000588462	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000585744	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
5CDS-intron	ENST00000588874	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
intron-intron	ENST00000585812	ENST00000300900		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BCAS3	chr17	59001861	+	CA4	chr17	58247912	+
Frame-shit	ENST00000357654	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000357654	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000357654	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000351666	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000351666	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000351666	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000309486	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000309486	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3UTR	ENST00000309486	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000346315	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000346315	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000346315	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000354071	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000354071	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000354071	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000352993	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000352993	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000352993	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000468300	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000468300	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000468300	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000591534	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000591534	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3UTR	ENST00000591534	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000591849	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000591849	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3UTR	ENST00000591849	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000586385	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000586385	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3UTR	ENST00000586385	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000493795	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3CDS	ENST00000493795	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
intron-3UTR	ENST00000493795	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000471181	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000471181	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000471181	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000491747	ENST00000591247		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
Frame-shit	ENST00000491747	ENST00000293406		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-3UTR	ENST00000491747	ENST00000585388		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	BRCA1	chr17	41267743	-	LSM12	chr17	42113668	-
5CDS-5UTR	ENST00000376227	ENST00000344302		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000376227	ENST00000360017		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000376227	ENST00000298190		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000376227	ENST00000377919		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000376227	ENST00000478600		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000376227	ENST00000487081		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000496651	ENST00000344302		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000496651	ENST00000360017		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000496651	ENST00000298190		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000496651	ENST00000377919		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000496651	ENST00000478600		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5CDS-5UTR	ENST00000496651	ENST00000487081		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	CCDC22	chrX	49099928	+	KRBOX4	chrX	46309866	+
5UTR-5UTR	ENST00000307569	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000307569	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000307569	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000307569	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000307569	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000307569	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000307569	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000324432	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000324432	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000324432	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000324432	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000324432	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000324432	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000324432	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000446600	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000446600	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000446600	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000446600	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000446600	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000446600	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000446600	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000413936	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000413936	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000413936	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000413936	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000413936	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000413936	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000413936	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000430490	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000430490	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-5UTR	ENST00000430490	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000430490	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000430490	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000430490	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
5UTR-intron	ENST00000430490	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000472426	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000472426	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000472426	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000472426	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000472426	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000472426	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000472426	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000446820	ENST00000461988		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000446820	ENST00000419840		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-5UTR	ENST00000446820	ENST00000394893		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000446820	ENST00000475509		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000446820	ENST00000545601		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000446820	ENST00000450476		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-intron	ENST00000446820	ENST00000439269		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	DTX2	chr7	76093026	+	POR	chr7	75583307	+
intron-3CDS	ENST00000568449	ENST00000576634		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000568449	ENST00000341633		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000568449	ENST00000417763		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000568449	ENST00000571025		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000568449	ENST00000572600		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000568449	ENST00000445795		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000307394	ENST00000576634		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000307394	ENST00000341633		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000307394	ENST00000417763		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000307394	ENST00000571025		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000307394	ENST00000572600		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
intron-3CDS	ENST00000307394	ENST00000445795		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	EME2	chr16	1830668	+	CLUAP1	chr16	3580568	+
In-frame	ENST00000264235	ENST00000357599		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000264235	ENST00000195173		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000264235	ENST00000451055		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
5CDS-5UTR	ENST00000264235	ENST00000465147		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000316626	ENST00000357599		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000316626	ENST00000195173		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000316626	ENST00000451055		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
5CDS-5UTR	ENST00000316626	ENST00000465147		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
5UTR-3CDS	ENST00000473886	ENST00000357599		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
5UTR-3CDS	ENST00000473886	ENST00000195173		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
5UTR-3CDS	ENST00000473886	ENST00000451055		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
5UTR-5UTR	ENST00000473886	ENST00000465147		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	GSK3B	chr3	119582266	-	SEMA5B	chr3	122667556	-
In-frame	ENST00000159111	ENST00000450849		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
In-frame	ENST00000159111	ENST00000301260		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000159111	ENST00000595916		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000159111	ENST00000398448		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000159111	ENST00000600960		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
In-frame	ENST00000381759	ENST00000450849		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
In-frame	ENST00000381759	ENST00000301260		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000381759	ENST00000595916		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000381759	ENST00000398448		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000381759	ENST00000600960		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
In-frame	ENST00000536461	ENST00000450849		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
In-frame	ENST00000536461	ENST00000301260		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000536461	ENST00000595916		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000536461	ENST00000398448		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000536461	ENST00000600960		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
3UTR-3CDS	ENST00000592175	ENST00000450849		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
3UTR-3CDS	ENST00000592175	ENST00000301260		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
3UTR-intron	ENST00000592175	ENST00000595916		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
3UTR-intron	ENST00000592175	ENST00000398448		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
3UTR-intron	ENST00000592175	ENST00000600960		TCGA	LD	PRAD	TCGA-ZG-A9KY-01A	KDM4B	chr19	5047680	+	ATCAY	chr19	3902485	+
5CDS-intron	ENST00000399804	ENST00000553443		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000399804	ENST00000476979		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000399804	ENST00000267368		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000399804	ENST00000382320		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000399804	ENST00000554555		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000286835	ENST00000553443		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000286835	ENST00000476979		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000286835	ENST00000267368		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000286835	ENST00000382320		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000286835	ENST00000554555		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000434667	ENST00000553443		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000434667	ENST00000476979		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000434667	ENST00000267368		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000434667	ENST00000382320		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5CDS-intron	ENST00000434667	ENST00000554555		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	SCAF4	chr21	33103976	-	TTC6	chr14	38437650	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L1-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000322247	ENST00000585331		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000322247	ENST00000317615		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000322247	ENST00000590217		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-intron	ENST00000322247	ENST00000589405		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000402563	ENST00000585331		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000402563	ENST00000317615		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000402563	ENST00000590217		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-intron	ENST00000402563	ENST00000589405		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000588475	ENST00000585331		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000588475	ENST00000317615		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000588475	ENST00000590217		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-intron	ENST00000588475	ENST00000589405		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	FAM210A	chr18	13726328	-	PSMG2	chr18	12712701	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L2-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
Frame-shit	ENST00000550697	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000550697	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000550697	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000548580	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000548580	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000548580	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000293422	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000293422	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000293422	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000348108	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000348108	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000348108	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000549017	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000549017	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000549017	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000549566	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000549566	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000549566	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000536128	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000536128	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000536128	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000547649	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000547649	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000547649	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000547408	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000547408	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000547408	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000551589	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000551589	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000551589	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000548400	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000548400	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000548400	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000548293	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
Frame-shit	ENST00000548293	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5CDS-intron	ENST00000548293	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
intron-3CDS	ENST00000551954	ENST00000376729		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
intron-3CDS	ENST00000551954	ENST00000218056		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
intron-intron	ENST00000551954	ENST00000492715		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	MYL6	chr12	56554104	+	WDR13	chrX	48460172	+
5UTR-3CDS	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-3CDS	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
intron-intron	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-intron	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L4-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39817544	-
5UTR-3CDS	ENST00000396060	ENST00000288235		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-5UTR	ENST00000396060	ENST00000558814		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-3CDS	ENST00000267869	ENST00000288235		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-5UTR	ENST00000267869	ENST00000558814		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-3CDS	ENST00000396064	ENST00000288235		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-5UTR	ENST00000396064	ENST00000558814		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-3CDS	ENST00000396063	ENST00000288235		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-5UTR	ENST00000396063	ENST00000558814		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
intron-3CDS	ENST00000396061	ENST00000288235		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
intron-5UTR	ENST00000396061	ENST00000558814		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-3CDS	ENST00000484743	ENST00000288235		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5UTR-5UTR	ENST00000484743	ENST00000558814		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	GTF2A2	chr15	59949605	-	MYO1E	chr15	59528871	-
5CDS-5UTR	ENST00000434600	ENST00000477789		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000434600	ENST00000371410		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000538785	ENST00000477789		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000538785	ENST00000371410		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000200639	ENST00000477789		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000200639	ENST00000371410		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000371335	ENST00000477789		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-5UTR	ENST00000371335	ENST00000371410		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
intron-5UTR	ENST00000540603	ENST00000477789		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
intron-5UTR	ENST00000540603	ENST00000371410		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	LAMP2	chrX	119602961	-	NKAP	chrX	119064128	-
5CDS-intron	ENST00000423230	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000423230	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000423230	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000423230	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000423230	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000423230	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000423230	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000398656	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000398656	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000398656	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000398656	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000398656	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000398656	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000398656	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000534366	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000534366	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000534366	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000534366	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000534366	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000534366	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000534366	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000528919	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000528919	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000528919	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000528919	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000528919	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000528919	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000528919	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000326134	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000326134	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000326134	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000326134	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000326134	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-intron	ENST00000326134	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
5CDS-5UTR	ENST00000326134	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-intron	ENST00000527071	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-intron	ENST00000527071	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-intron	ENST00000527071	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-intron	ENST00000527071	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-5UTR	ENST00000527071	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-intron	ENST00000527071	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
3UTR-5UTR	ENST00000527071	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-intron	ENST00000544576	ENST00000571102		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-intron	ENST00000544576	ENST00000431515		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-intron	ENST00000544576	ENST00000440027		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-intron	ENST00000544576	ENST00000262300		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-5UTR	ENST00000544576	ENST00000574385		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-intron	ENST00000544576	ENST00000574730		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-5UTR	ENST00000544576	ENST00000573944		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MROH1	chr8	145255444	+	PKMYT1	chr16	3027032	-
intron-intron	ENST00000550697	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000548580	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000293422	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000348108	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000549017	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000549566	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000536128	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000547649	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
3UTR-intron	ENST00000547408	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000551589	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000548400	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-intron	ENST00000548293	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
3UTR-intron	ENST00000551954	ENST00000424846		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	TPM3P9	chr19	53943081	+
intron-3UTR	ENST00000550697	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000548580	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000293422	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000348108	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000549017	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000549566	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000536128	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000547649	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
3UTR-3UTR	ENST00000547408	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000551589	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000548400	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3UTR	ENST00000548293	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
3UTR-3UTR	ENST00000551954	ENST00000454407		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	MYL6	chr12	56556115	+	ZNF761	chr19	53948254	+
intron-3CDS	ENST00000394023	ENST00000254260		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-5UTR	ENST00000394023	ENST00000400226		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-intron	ENST00000394023	ENST00000588683		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-3CDS	ENST00000550164	ENST00000254260		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-5UTR	ENST00000550164	ENST00000400226		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-intron	ENST00000550164	ENST00000588683		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-3CDS	ENST00000347471	ENST00000254260		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-5UTR	ENST00000347471	ENST00000400226		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-intron	ENST00000347471	ENST00000588683		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-3CDS	ENST00000267064	ENST00000254260		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-5UTR	ENST00000267064	ENST00000400226		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-intron	ENST00000267064	ENST00000588683		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-3CDS	ENST00000550859	ENST00000254260		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-5UTR	ENST00000550859	ENST00000400226		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
intron-intron	ENST00000550859	ENST00000588683		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	SMARCC2	chr12	56557364	-	RHPN2	chr19	33517538	-
5CDS-5UTR	ENST00000332149	ENST00000447054		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000265022		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000344484		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000382164		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000332149	ENST00000544847		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-5UTR	ENST00000398585	ENST00000447054		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000265022		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000344484		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000382164		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000398585	ENST00000544847		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-5UTR	ENST00000458356	ENST00000447054		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000265022		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000344484		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000382164		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
5CDS-intron	ENST00000458356	ENST00000544847		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
intron-5UTR	ENST00000497881	ENST00000447054		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000265022		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000344484		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000382164		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
intron-intron	ENST00000497881	ENST00000544847		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	TMPRSS2	chr21	42866283	-	DGKG	chr3	185823731	-
3UTR-intron	ENST00000355557	ENST00000416488		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000536435		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000228289		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000541211		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000539248		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000542711		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000537565		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000536899		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000542986		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000541009		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000355557	ENST00000592241		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000416488		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000536435		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000228289		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000541211		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000539248		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000542711		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000537565		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000536899		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000542986		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000541009		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-intron	ENST00000544426	ENST00000592241		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000416488		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000536435		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000228289		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000541211		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000539248		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000542711		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000537565		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000536899		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000542986		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000541009		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
intron-intron	ENST00000319849	ENST00000592241		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000416488		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000536435		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000228289		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000541211		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000539248		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000542711		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000537565		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000536899		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000542986		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000541009		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
5CDS-intron	ENST00000440550	ENST00000592241		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF140	chr12	133683452	+	ZNF268	chr12	133786279	+
3UTR-5UTR	ENST00000454407	ENST00000444631		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF761	chr19	53952892	+	SARNP	chr12	56197512	-
3UTR-5UTR	ENST00000454407	ENST00000336133		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF761	chr19	53952892	+	SARNP	chr12	56197512	-
3UTR-5UTR	ENST00000454407	ENST00000552080		TCGA	LD	PRAD	TCGA-ZG-A9L5-01A	ZNF761	chr19	53952892	+	SARNP	chr12	56197512	-
intron-3CDS	ENST00000488813	ENST00000403799		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000488813	ENST00000395796		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000488813	ENST00000345378		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000488813	ENST00000437084		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-5UTR	ENST00000488813	ENST00000476008		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000395879	ENST00000403799		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000395879	ENST00000395796		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000395879	ENST00000345378		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-3CDS	ENST00000395879	ENST00000437084		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
intron-5UTR	ENST00000395879	ENST00000476008		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000395880	ENST00000403799		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000395880	ENST00000395796		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000395880	ENST00000345378		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000395880	ENST00000437084		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-5UTR	ENST00000395880	ENST00000476008		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000310564	ENST00000403799		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000310564	ENST00000395796		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000310564	ENST00000345378		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000310564	ENST00000437084		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-5UTR	ENST00000310564	ENST00000476008		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000223336	ENST00000403799		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000223336	ENST00000395796		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000223336	ENST00000345378		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000223336	ENST00000437084		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-5UTR	ENST00000223336	ENST00000476008		TCGA	LD	PRAD	TCGA-ZG-A9L6-01A	COA1	chr7	43769028	-	GCK	chr7	44193062	-
5UTR-3CDS	ENST00000298784	ENST00000371953		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	FAM35A	chr10	88855005	+	PTEN	chr10	89685270	+
5UTR-intron	ENST00000298784	ENST00000472832		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	FAM35A	chr10	88855005	+	PTEN	chr10	89685270	+
5UTR-3CDS	ENST00000298786	ENST00000371953		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	FAM35A	chr10	88855005	+	PTEN	chr10	89685270	+
5UTR-intron	ENST00000298786	ENST00000472832		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	FAM35A	chr10	88855005	+	PTEN	chr10	89685270	+
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9L9-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
Frame-shit	ENST00000311351	ENST00000343823		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000311351	ENST00000250635		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000311351	ENST00000545394		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000311351	ENST00000428278		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000311351	ENST00000521652		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-intron	ENST00000311351	ENST00000524263		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
Frame-shit	ENST00000520755	ENST00000343823		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000520755	ENST00000250635		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000520755	ENST00000545394		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000520755	ENST00000428278		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-5UTR	ENST00000520755	ENST00000521652		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5CDS-intron	ENST00000520755	ENST00000524263		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5UTR-3CDS	ENST00000522515	ENST00000343823		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5UTR-5UTR	ENST00000522515	ENST00000250635		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5UTR-5UTR	ENST00000522515	ENST00000545394		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5UTR-5UTR	ENST00000522515	ENST00000428278		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5UTR-5UTR	ENST00000522515	ENST00000521652		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
5UTR-intron	ENST00000522515	ENST00000524263		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	LSM1	chr8	38029483	-	ASH2L	chr8	37963896	+
Frame-shit	ENST00000539214	ENST00000328908		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
Frame-shit	ENST00000539214	ENST00000397588		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
5CDS-3UTR	ENST00000539214	ENST00000472453		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
5CDS-3UTR	ENST00000539214	ENST00000449732		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
5CDS-3UTR	ENST00000539214	ENST00000343762		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
Frame-shit	ENST00000368845	ENST00000328908		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
Frame-shit	ENST00000368845	ENST00000397588		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
5CDS-3UTR	ENST00000368845	ENST00000472453		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
5CDS-3UTR	ENST00000368845	ENST00000449732		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
5CDS-3UTR	ENST00000368845	ENST00000343762		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
intron-3CDS	ENST00000467675	ENST00000328908		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
intron-3CDS	ENST00000467675	ENST00000397588		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
intron-3UTR	ENST00000467675	ENST00000472453		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
intron-3UTR	ENST00000467675	ENST00000449732		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
intron-3UTR	ENST00000467675	ENST00000343762		TCGA	LD	PRAD	TCGA-ZG-A9LB-01A	OAT	chr10	126089409	-	CDYL	chr6	4943780	+
In-frame	ENST00000392314	ENST00000332644		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TMEFF2	chr2	193044394	-	TMPRSS11B	chr4	69098134	-
In-frame	ENST00000272771	ENST00000332644		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TMEFF2	chr2	193044394	-	TMPRSS11B	chr4	69098134	-
intron-3CDS	ENST00000487771	ENST00000332644		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TMEFF2	chr2	193044394	-	TMPRSS11B	chr4	69098134	-
intron-3CDS	ENST00000409056	ENST00000332644		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TMEFF2	chr2	193044394	-	TMPRSS11B	chr4	69098134	-
In-frame	ENST00000373448	ENST00000295966		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
In-frame	ENST00000373448	ENST00000482387		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-5UTR	ENST00000373448	ENST00000472469		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-intron	ENST00000373448	ENST00000491845		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-intron	ENST00000373448	ENST00000478363		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
Frame-shit	ENST00000373447	ENST00000295966		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
Frame-shit	ENST00000373447	ENST00000482387		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-5UTR	ENST00000373447	ENST00000472469		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-intron	ENST00000373447	ENST00000491845		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-intron	ENST00000373447	ENST00000478363		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
Frame-shit	ENST00000449821	ENST00000295966		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
Frame-shit	ENST00000449821	ENST00000482387		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-5UTR	ENST00000449821	ENST00000472469		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-intron	ENST00000449821	ENST00000491845		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
5CDS-intron	ENST00000449821	ENST00000478363		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
intron-3CDS	ENST00000487362	ENST00000295966		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
intron-3CDS	ENST00000487362	ENST00000482387		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
intron-5UTR	ENST00000487362	ENST00000472469		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
intron-intron	ENST00000487362	ENST00000491845		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
intron-intron	ENST00000487362	ENST00000478363		TCGA	LD	PRAD	TCGA-ZG-A9LM-01A	TTI1	chr20	36631030	-	C3orf67	chr3	58870435	-
3UTR-5UTR	ENST00000413518	ENST00000318203		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	ERVK3-1	chr19	58817582	+	ZSCAN4	chr19	58187409	+
5UTR-3CDS	ENST00000357410	ENST00000243924		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	EYA2	chr20	45523626	+	PI3	chr20	43804502	+
5UTR-3CDS	ENST00000327619	ENST00000243924		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	EYA2	chr20	45523626	+	PI3	chr20	43804502	+
intron-3CDS	ENST00000497428	ENST00000243924		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	EYA2	chr20	45523626	+	PI3	chr20	43804502	+
intron-3CDS	ENST00000317304	ENST00000243924		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	EYA2	chr20	45523626	+	PI3	chr20	43804502	+
In-frame	ENST00000210444	ENST00000427277		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
In-frame	ENST00000210444	ENST00000297954		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
In-frame	ENST00000210444	ENST00000395475		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
5CDS-5UTR	ENST00000210444	ENST00000356055		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
5CDS-5UTR	ENST00000210444	ENST00000349097		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
5CDS-5UTR	ENST00000210444	ENST00000395477		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
5CDS-intron	ENST00000210444	ENST00000471076		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-3CDS	ENST00000461452	ENST00000427277		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-3CDS	ENST00000461452	ENST00000297954		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-3CDS	ENST00000461452	ENST00000395475		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-5UTR	ENST00000461452	ENST00000356055		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-5UTR	ENST00000461452	ENST00000349097		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-5UTR	ENST00000461452	ENST00000395477		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
intron-intron	ENST00000461452	ENST00000471076		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	NANS	chr9	100823279	+	WNK2	chr9	96019230	+
In-frame	ENST00000574876	ENST00000007699		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000574876	ENST00000570627		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
In-frame	ENST00000572293	ENST00000007699		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000572293	ENST00000570627		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
In-frame	ENST00000269230	ENST00000007699		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000269230	ENST00000570627		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
In-frame	ENST00000301396	ENST00000007699		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000301396	ENST00000570627		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5UTR-3CDS	ENST00000436683	ENST00000007699		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5UTR-5UTR	ENST00000436683	ENST00000570627		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5UTR-3CDS	ENST00000570823	ENST00000007699		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
5UTR-5UTR	ENST00000570823	ENST00000570627		TCGA	LD	PRAD	TCGA-ZG-A9LN-01A	PELP1	chr17	4607158	-	YBX2	chr17	7196857	-
intron-5UTR	ENST00000379933	ENST00000431639		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000316024		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000457584		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000396463		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379933	ENST00000534050		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379938	ENST00000431639		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379938	ENST00000316024		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379938	ENST00000457584		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379938	ENST00000396463		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000379938	ENST00000534050		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000334984	ENST00000431639		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000334984	ENST00000316024		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000334984	ENST00000457584		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000334984	ENST00000396463		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000334984	ENST00000534050		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000349384	ENST00000431639		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000349384	ENST00000316024		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000349384	ENST00000457584		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000349384	ENST00000396463		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000349384	ENST00000534050		TCGA	LD	PRAD	TCGA-ZG-A9LU-01A	RREB1	chr6	7108935	+	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000367942	ENST00000262291		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
5CDS-intron	ENST00000367942	ENST00000537567		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
5CDS-intron	ENST00000367942	ENST00000539763		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
5CDS-intron	ENST00000367942	ENST00000536180		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
5CDS-intron	ENST00000367942	ENST00000545362		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
5CDS-intron	ENST00000367942	ENST00000588617		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
intron-5UTR	ENST00000476437	ENST00000262291		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
intron-intron	ENST00000476437	ENST00000537567		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
intron-intron	ENST00000476437	ENST00000539763		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
intron-intron	ENST00000476437	ENST00000536180		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
intron-intron	ENST00000476437	ENST00000545362		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
intron-intron	ENST00000476437	ENST00000588617		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	ATF6	chr1	161748110	+	VMP1	chr17	57784888	+
Frame-shit	ENST00000211998	ENST00000367942		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
5CDS-intron	ENST00000211998	ENST00000476437		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
Frame-shit	ENST00000372755	ENST00000367942		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
5CDS-intron	ENST00000372755	ENST00000476437		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
intron-3CDS	ENST00000478896	ENST00000367942		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
intron-intron	ENST00000478896	ENST00000476437		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
intron-3CDS	ENST00000417648	ENST00000367942		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
intron-intron	ENST00000417648	ENST00000476437		TCGA	LD	PRAD	TCGA-ZG-A9LY-01A	VCL	chr10	75855613	+	ATF6	chr1	161748034	+
5CDS-intron	ENST00000325599	ENST00000498485		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
5CDS-intron	ENST00000325599	ENST00000259457		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
5CDS-intron	ENST00000325599	ENST00000536392		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
intron-intron	ENST00000463369	ENST00000498485		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
intron-intron	ENST00000463369	ENST00000259457		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
intron-intron	ENST00000463369	ENST00000536392		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
intron-intron	ENST00000468371	ENST00000498485		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
intron-intron	ENST00000468371	ENST00000259457		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
intron-intron	ENST00000468371	ENST00000536392		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	SHQ1	chr3	72897348	-	PSMB7	chr9	127167710	-
In-frame	ENST00000360605	ENST00000244137		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
In-frame	ENST00000360605	ENST00000397032		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
In-frame	ENST00000360605	ENST00000436370		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5CDS-intron	ENST00000360605	ENST00000591968		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
In-frame	ENST00000542441	ENST00000244137		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
In-frame	ENST00000542441	ENST00000397032		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
In-frame	ENST00000542441	ENST00000436370		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5CDS-intron	ENST00000542441	ENST00000591968		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5UTR-3CDS	ENST00000392271	ENST00000244137		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5UTR-3CDS	ENST00000392271	ENST00000397032		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5UTR-3CDS	ENST00000392271	ENST00000436370		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5UTR-intron	ENST00000392271	ENST00000591968		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000312051	ENST00000244137		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000312051	ENST00000397032		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000312051	ENST00000436370		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-intron	ENST00000312051	ENST00000591968		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000574176	ENST00000244137		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000574176	ENST00000397032		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-3CDS	ENST00000574176	ENST00000436370		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
intron-intron	ENST00000574176	ENST00000591968		TCGA	LD	PRAD	TCGA-ZG-A9LZ-01A	URI1	chr19	30462134	+	PEPD	chr19	33904549	-
5UTR-5UTR	ENST00000342505	ENST00000329654		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
5UTR-intron	ENST00000342505	ENST00000371049		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
5UTR-intron	ENST00000342505	ENST00000423207		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
5UTR-intron	ENST00000342505	ENST00000371048		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
5UTR-intron	ENST00000342505	ENST00000371045		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
5UTR-intron	ENST00000342505	ENST00000480109		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
intron-5UTR	ENST00000465376	ENST00000329654		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
intron-intron	ENST00000465376	ENST00000371049		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
intron-intron	ENST00000465376	ENST00000423207		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
intron-intron	ENST00000465376	ENST00000371048		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
intron-intron	ENST00000465376	ENST00000371045		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
intron-intron	ENST00000465376	ENST00000480109		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	JAK1	chr1	65432016	-	PDE4B	chr1	66378928	+
In-frame	ENST00000361205	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000361205	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000361205	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000361205	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000399848	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000399848	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000399848	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000399848	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000359446	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000359446	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000359446	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
In-frame	ENST00000359446	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000587757	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000587757	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000587757	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000587757	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000585931	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000585931	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000585931	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000585931	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000586765	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000586765	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000586765	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000586765	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000590308	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000590308	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000590308	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000590308	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000592991	ENST00000581982		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000592991	ENST00000280200		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000592991	ENST00000577287		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
intron-3CDS	ENST00000592991	ENST00000582621		TCGA	LD	PRAD	TCGA-ZG-A9M4-01A	LDLRAD4	chr18	13438383	+	CD226	chr18	67540482	-
5UTR-intron	ENST00000332149	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000332149	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000332149	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000398585	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000398585	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-intron	ENST00000458356	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
intron-5UTR	ENST00000458356	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398907		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398905		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000288319		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398897		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000398911		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398910		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000417133		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000442448		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000453032		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000398919		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-intron	ENST00000497881	ENST00000429727		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
5UTR-5UTR	ENST00000497881	ENST00000485493		TCGA	LD	PRAD	TCGA-ZG-A9MC-01A	TMPRSS2	chr21	42880008	-	ERG	chr21	39956869	-
In-frame	ENST00000261590	ENST00000237014		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	DSG2	chr18	29078258	+	TTR	chr18	29172858	+
In-frame	ENST00000585206	ENST00000237014		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	DSG2	chr18	29078258	+	TTR	chr18	29172858	+
Frame-shit	ENST00000372371	ENST00000553443		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
Frame-shit	ENST00000372371	ENST00000476979		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
Frame-shit	ENST00000372371	ENST00000267368		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
5CDS-3UTR	ENST00000372371	ENST00000382320		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
5CDS-intron	ENST00000372371	ENST00000554555		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
intron-3CDS	ENST00000484760	ENST00000553443		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
intron-3CDS	ENST00000484760	ENST00000476979		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
intron-3CDS	ENST00000484760	ENST00000267368		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
intron-3UTR	ENST00000484760	ENST00000382320		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
intron-intron	ENST00000484760	ENST00000554555		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	POLR3A	chr10	79767460	-	TTC6	chr14	38310650	+
intron-3CDS	ENST00000553443	ENST00000372371		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-intron	ENST00000553443	ENST00000484760		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-3CDS	ENST00000476979	ENST00000372371		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-intron	ENST00000476979	ENST00000484760		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-3CDS	ENST00000267368	ENST00000372371		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-intron	ENST00000267368	ENST00000484760		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-3CDS	ENST00000382320	ENST00000372371		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-intron	ENST00000382320	ENST00000484760		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-3CDS	ENST00000554555	ENST00000372371		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
intron-intron	ENST00000554555	ENST00000484760		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	TTC6	chr14	38065213	+	POLR3A	chr10	79764646	-
5CDS-intron	ENST00000493485	ENST00000491306		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000493485	ENST00000600880		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000493485	ENST00000446558		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000493485	ENST00000456586		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000493485	ENST00000598925		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000493485	ENST00000427280		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000493485	ENST00000441179		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000491306		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000600880		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000446558		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000456586		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000598925		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000427280		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
intron-intron	ENST00000494186	ENST00000441179		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000491306		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000600880		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000446558		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000456586		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000598925		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000427280		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000331410	ENST00000441179		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000491306		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000600880		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000446558		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000456586		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000598925		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000427280		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000483089	ENST00000441179		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000491306		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000600880		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000446558		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000456586		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000598925		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000427280		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000448667	ENST00000441179		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000491306		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000600880		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000446558		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000456586		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000598925		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000427280		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-intron	ENST00000379724	ENST00000441179		TCGA	LD	PRAD	TCGA-ZG-A9N3-01A	ZNF789	chr7	99077410	+	RPL37A	chr2	217384055	+
5CDS-5UTR	ENST00000280871	ENST00000416284		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000280871	ENST00000551619		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000280871	ENST00000550003		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000280871	ENST00000551449		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000280871	ENST00000549456		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000380858	ENST00000416284		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000380858	ENST00000551619		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000380858	ENST00000550003		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000380858	ENST00000551449		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000380858	ENST00000549456		TCGA	LD	PRAD	TCGA-ZG-A9ND-01A	SLC2A13	chr12	40223905	-	FAM19A2	chr12	62261207	-
In-frame	ENST00000369162	ENST00000304877		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
In-frame	ENST00000369162	ENST00000534000		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
In-frame	ENST00000369162	ENST00000368402		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
In-frame	ENST00000369162	ENST00000368388		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
In-frame	ENST00000369162	ENST00000527711		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
In-frame	ENST00000369162	ENST00000528193		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000369162	ENST00000532429		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000369162	ENST00000534199		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000369162	ENST00000392482		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000369162	ENST00000524679		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000369162	ENST00000530868		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000522650	ENST00000304877		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000522650	ENST00000534000		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000522650	ENST00000368402		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000522650	ENST00000368388		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000522650	ENST00000527711		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000522650	ENST00000528193		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000522650	ENST00000532429		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000522650	ENST00000534199		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000522650	ENST00000392482		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000522650	ENST00000524679		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-intron	ENST00000522650	ENST00000530868		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000369143	ENST00000304877		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000369143	ENST00000534000		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000369143	ENST00000368402		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000369143	ENST00000368388		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000369143	ENST00000527711		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-3CDS	ENST00000369143	ENST00000528193		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000369143	ENST00000532429		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000369143	ENST00000534199		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000369143	ENST00000392482		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-5UTR	ENST00000369143	ENST00000524679		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
intron-intron	ENST00000369143	ENST00000530868		TCGA	RV	READ	TCGA-AH-6644-01A	ASCC3	chr6	100988039	-	TPD52L1	chr6	125541224	+
In-frame	ENST00000288602	ENST00000343526		TCGA	RV	READ	TCGA-F5-6464-01A	BRAF	chr7	140624366	-	TRIM24	chr7	138258252	+
In-frame	ENST00000288602	ENST00000415680		TCGA	RV	READ	TCGA-F5-6464-01A	BRAF	chr7	140624366	-	TRIM24	chr7	138258252	+
5CDS-intron	ENST00000288602	ENST00000497516		TCGA	RV	READ	TCGA-F5-6464-01A	BRAF	chr7	140624366	-	TRIM24	chr7	138258252	+
In-frame	ENST00000209728	ENST00000264659		TCGA	RV	READ	TCGA-EI-6509-01A	CDC6	chr17	38453019	+	SRCIN1	chr17	36735044	-
In-frame	ENST00000209728	ENST00000578925		TCGA	RV	READ	TCGA-EI-6509-01A	CDC6	chr17	38453019	+	SRCIN1	chr17	36735044	-
5CDS-intron	ENST00000209728	ENST00000398579		TCGA	RV	READ	TCGA-EI-6509-01A	CDC6	chr17	38453019	+	SRCIN1	chr17	36735044	-
In-frame	ENST00000258930	ENST00000258873		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
5CDS-intron	ENST00000258930	ENST00000541759		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
5CDS-intron	ENST00000258930	ENST00000560817		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
5CDS-5UTR	ENST00000258930	ENST00000558828		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-3CDS	ENST00000539011	ENST00000258873		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000539011	ENST00000541759		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000539011	ENST00000560817		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000539011	ENST00000558828		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-3CDS	ENST00000557846	ENST00000258873		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000557846	ENST00000541759		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000557846	ENST00000560817		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000557846	ENST00000558828		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-3CDS	ENST00000560618	ENST00000258873		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000560618	ENST00000541759		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000560618	ENST00000560817		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000560618	ENST00000558828		TCGA	RV	READ	TCGA-AF-5654-01A	CIB2	chr15	78416047	-	ACSBG1	chr15	78500444	-
Frame-shit	ENST00000413052	ENST00000369522		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000413052	ENST00000369518		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
5CDS-intron	ENST00000413052	ENST00000477590		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000369645	ENST00000369522		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000369645	ENST00000369518		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
5CDS-intron	ENST00000369645	ENST00000477590		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
intron-3CDS	ENST00000544796	ENST00000369522		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
intron-3CDS	ENST00000544796	ENST00000369518		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
intron-intron	ENST00000544796	ENST00000477590		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000369644	ENST00000369522		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000369644	ENST00000369518		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
5CDS-intron	ENST00000369644	ENST00000477590		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
3UTR-3CDS	ENST00000468624	ENST00000369522		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
3UTR-3CDS	ENST00000468624	ENST00000369518		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
3UTR-intron	ENST00000468624	ENST00000477590		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000357443	ENST00000369522		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
Frame-shit	ENST00000357443	ENST00000369518		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
5CDS-intron	ENST00000357443	ENST00000477590		TCGA	RV	READ	TCGA-EI-6883-01A	MOV10	chr1	113232720	+	SYCP1	chr1	115438069	+
In-frame	ENST00000268712	ENST00000581006		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
In-frame	ENST00000268712	ENST00000498772		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
In-frame	ENST00000268712	ENST00000225609		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
In-frame	ENST00000268712	ENST00000395844		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
5CDS-intron	ENST00000268712	ENST00000463810		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395851	ENST00000581006		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395851	ENST00000498772		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395851	ENST00000225609		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395851	ENST00000395844		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
5CDS-intron	ENST00000395851	ENST00000463810		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000395857	ENST00000581006		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000395857	ENST00000498772		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000395857	ENST00000225609		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000395857	ENST00000395844		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-intron	ENST00000395857	ENST00000463810		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395848	ENST00000581006		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395848	ENST00000498772		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395848	ENST00000225609		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
Frame-shit	ENST00000395848	ENST00000395844		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
5CDS-intron	ENST00000395848	ENST00000463810		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000583226	ENST00000581006		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000583226	ENST00000498772		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000583226	ENST00000225609		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-3CDS	ENST00000583226	ENST00000395844		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
intron-intron	ENST00000583226	ENST00000463810		TCGA	RV	READ	TCGA-F5-6864-01A	NCOR1	chr17	16062074	-	PIGL	chr17	16203202	+
In-frame	ENST00000401707	ENST00000318528		TCGA	RV	READ	TCGA-AG-3731-01A	POP1	chr8	99148966	+	C8orf47	chr8	99105449	+
In-frame	ENST00000401707	ENST00000545282		TCGA	RV	READ	TCGA-AG-3731-01A	POP1	chr8	99148966	+	C8orf47	chr8	99105449	+
In-frame	ENST00000349693	ENST00000318528		TCGA	RV	READ	TCGA-AG-3731-01A	POP1	chr8	99148966	+	C8orf47	chr8	99105449	+
In-frame	ENST00000349693	ENST00000545282		TCGA	RV	READ	TCGA-AG-3731-01A	POP1	chr8	99148966	+	C8orf47	chr8	99105449	+
Frame-shit	ENST00000353139	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
Frame-shit	ENST00000353139	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000360679	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000360679	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000394406	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000394406	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000335166	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000335166	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
5UTR-3CDS	ENST00000416895	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
5UTR-3CDS	ENST00000416895	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000361253	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000361253	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000588142	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000588142	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
5UTR-3CDS	ENST00000589665	ENST00000394287		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
5UTR-3CDS	ENST00000589665	ENST00000300651		TCGA	RV	READ	TCGA-AG-3902-01A	ACACA	chr17	35766352	-	MED1	chr17	37588269	-
Frame-shit	ENST00000373233	ENST00000311637		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
Frame-shit	ENST00000373233	ENST00000338821		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
Frame-shit	ENST00000373233	ENST00000402822		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
5CDS-5UTR	ENST00000373233	ENST00000477492		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000309279	ENST00000311637		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000309279	ENST00000338821		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000309279	ENST00000402822		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000309279	ENST00000477492		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373222	ENST00000311637		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373222	ENST00000338821		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000373222	ENST00000402822		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000373222	ENST00000477492		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000480022	ENST00000311637		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000480022	ENST00000338821		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-3CDS	ENST00000480022	ENST00000402822		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
intron-5UTR	ENST00000480022	ENST00000477492		TCGA	RV	READ	TCGA-DC-6156-01A	CHD6	chr20	40111949	-	ATP9A	chr20	50346517	-
In-frame	ENST00000543086	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000543086	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
In-frame	ENST00000546231	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000546231	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
In-frame	ENST00000397203	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000397203	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
In-frame	ENST00000360905	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000360905	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
In-frame	ENST00000589028	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000589028	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
In-frame	ENST00000355446	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000355446	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
3UTR-3CDS	ENST00000536573	ENST00000377067		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
3UTR-intron	ENST00000536573	ENST00000483422		TCGA	RV	READ	TCGA-F5-6864-01A	ERC1	chr12	1250953	+	GPC5	chr13	93518535	+
Frame-shit	ENST00000434748	ENST00000330579		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000434748	ENST00000535343		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000434748	ENST00000538784		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000261673	ENST00000330579		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000261673	ENST00000535343		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000261673	ENST00000538784		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000542061	ENST00000330579		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000542061	ENST00000535343		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000542061	ENST00000538784		TCGA	RV	READ	TCGA-G5-6572-01A	FBRSL1	chr12	133104574	+	NOC4L	chr12	132635526	+
5CDS-3UTR	ENST00000155840	ENST00000477339		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
5CDS-3UTR	ENST00000155840	ENST00000380390		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
5CDS-intron	ENST00000155840	ENST00000300762		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
5CDS-3UTR	ENST00000335475	ENST00000477339		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
5CDS-3UTR	ENST00000335475	ENST00000380390		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
5CDS-intron	ENST00000335475	ENST00000300762		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
intron-3UTR	ENST00000526095	ENST00000477339		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
intron-3UTR	ENST00000526095	ENST00000380390		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
intron-intron	ENST00000526095	ENST00000300762		TCGA	RV	READ	TCGA-DC-6160-01A	KCNQ1	chr11	2610084	+	MMP26	chr11	4788500	+
5CDS-5UTR	ENST00000326764	ENST00000400919		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
5CDS-5UTR	ENST00000326764	ENST00000378546		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
5CDS-5UTR	ENST00000326764	ENST00000487186		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
5CDS-5UTR	ENST00000326764	ENST00000378545		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
intron-5UTR	ENST00000376514	ENST00000400919		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
intron-5UTR	ENST00000376514	ENST00000378546		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
intron-5UTR	ENST00000376514	ENST00000487186		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
intron-5UTR	ENST00000376514	ENST00000378545		TCGA	RV	READ	TCGA-CI-6622-01A	LENG8	chr19	54969700	+	C1orf86	chr1	2125572	-
5CDS-5UTR	ENST00000202677	ENST00000254977		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000202677	ENST00000399006		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000202677	ENST00000405977		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000202677	ENST00000378226		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
5CDS-intron	ENST00000202677	ENST00000488503		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
intron-5UTR	ENST00000495793	ENST00000254977		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
intron-5UTR	ENST00000495793	ENST00000399006		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
intron-5UTR	ENST00000495793	ENST00000405977		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
intron-5UTR	ENST00000495793	ENST00000378226		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
intron-intron	ENST00000495793	ENST00000488503		TCGA	RV	READ	TCGA-EI-6514-01A	RALGAPA2	chr20	20656880	-	BTBD3	chr20	11898982	+
intron-3CDS	ENST00000540266	ENST00000340811		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000540266	ENST00000070846		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-intron	ENST00000540266	ENST00000546741		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000539019	ENST00000340811		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000539019	ENST00000070846		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-intron	ENST00000539019	ENST00000546741		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000422622	ENST00000340811		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000422622	ENST00000070846		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-intron	ENST00000422622	ENST00000546741		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000242729	ENST00000340811		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000242729	ENST00000070846		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-intron	ENST00000242729	ENST00000546741		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000535504	ENST00000340811		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-3CDS	ENST00000535504	ENST00000070846		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
intron-intron	ENST00000535504	ENST00000546741		TCGA	RV	READ	TCGA-DC-4745-01A	SSPN	chr12	26275085	+	PKP2	chr12	32949232	-
Frame-shit	ENST00000283645	ENST00000399881		TCGA	RV	READ	TCGA-CL-5917-01A	TUBGCP5	chr15	22872499	+	KCNU1	chr8	36763226	+
5CDS-intron	ENST00000283645	ENST00000518904		TCGA	RV	READ	TCGA-CL-5917-01A	TUBGCP5	chr15	22872499	+	KCNU1	chr8	36763226	+
Frame-shit	ENST00000453949	ENST00000399881		TCGA	RV	READ	TCGA-CL-5917-01A	TUBGCP5	chr15	22872499	+	KCNU1	chr8	36763226	+
5CDS-intron	ENST00000453949	ENST00000518904		TCGA	RV	READ	TCGA-CL-5917-01A	TUBGCP5	chr15	22872499	+	KCNU1	chr8	36763226	+
intron-3CDS	ENST00000559846	ENST00000399881		TCGA	RV	READ	TCGA-CL-5917-01A	TUBGCP5	chr15	22872499	+	KCNU1	chr8	36763226	+
intron-intron	ENST00000559846	ENST00000518904		TCGA	RV	READ	TCGA-CL-5917-01A	TUBGCP5	chr15	22872499	+	KCNU1	chr8	36763226	+
Frame-shit	ENST00000339859	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000339859	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000339859	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000339859	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000408019	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000408019	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000408019	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000408019	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000428547	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000428547	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000428547	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000428547	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000394811	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000394811	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000394811	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5UTR-intron	ENST00000394811	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000497106	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000497106	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000497106	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-intron	ENST00000497106	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000422491	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000422491	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000422491	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
intron-intron	ENST00000422491	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000319786	ENST00000394903		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000319786	ENST00000338820		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
Frame-shit	ENST00000319786	ENST00000444643		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
5CDS-intron	ENST00000319786	ENST00000461919		TCGA	RV	READ	TCGA-CI-6624-01C	USP54	chr10	75331179	-	DNAJB12	chr10	74104885	-
In-frame	ENST00000238855	ENST00000442101		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-intron	ENST00000238855	ENST00000498824		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-5UTR	ENST00000238855	ENST00000239882		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
In-frame	ENST00000422803	ENST00000442101		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-intron	ENST00000422803	ENST00000498824		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-5UTR	ENST00000422803	ENST00000239882		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
In-frame	ENST00000238856	ENST00000442101		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-intron	ENST00000238856	ENST00000498824		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-5UTR	ENST00000238856	ENST00000239882		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
In-frame	ENST00000409933	ENST00000442101		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-intron	ENST00000409933	ENST00000498824		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-5UTR	ENST00000409933	ENST00000239882		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
In-frame	ENST00000409183	ENST00000442101		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-intron	ENST00000409183	ENST00000498824		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
5CDS-5UTR	ENST00000409183	ENST00000239882		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
intron-3CDS	ENST00000487769	ENST00000442101		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
intron-intron	ENST00000487769	ENST00000498824		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
intron-5UTR	ENST00000487769	ENST00000239882		TCGA	RV	READ	TCGA-G5-6235-01A	AFTPH	chr2	64796813	+	ELF1	chr13	41556418	-
In-frame	ENST00000416691	ENST00000299341		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000416691	ENST00000376352		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000416691	ENST00000405898		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000416691	ENST00000434978		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000416691	ENST00000398391		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000455146	ENST00000299341		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000455146	ENST00000376352		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000455146	ENST00000405898		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000455146	ENST00000434978		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
In-frame	ENST00000455146	ENST00000398391		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000465775	ENST00000299341		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000465775	ENST00000376352		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000465775	ENST00000405898		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000465775	ENST00000434978		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000465775	ENST00000398391		TCGA	RV	READ	TCGA-AG-3731-01A	COG6	chr13	40235018	+	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000514747	ENST00000517913		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000514747	ENST00000435422		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000514747	ENST00000447401		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000514747	ENST00000337851		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000329540	ENST00000517913		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000329540	ENST00000435422		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000329540	ENST00000447401		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000329540	ENST00000337851		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000443375	ENST00000517913		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000443375	ENST00000435422		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000443375	ENST00000447401		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
Frame-shit	ENST00000443375	ENST00000337851		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000508298	ENST00000517913		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000508298	ENST00000435422		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000508298	ENST00000447401		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000508298	ENST00000337851		TCGA	RV	READ	TCGA-CI-6622-01A	FAM193B	chr5	176958283	-	SGCD	chr5	155935611	+
intron-3CDS	ENST00000492698	ENST00000448525		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000492698	ENST00000382745		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000492698	ENST00000262318		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-intron	ENST00000492698	ENST00000566812		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
In-frame	ENST00000252999	ENST00000448525		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
In-frame	ENST00000252999	ENST00000382745		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
In-frame	ENST00000252999	ENST00000262318		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
5CDS-intron	ENST00000252999	ENST00000566812		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370692	ENST00000448525		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370692	ENST00000382745		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370692	ENST00000262318		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-intron	ENST00000370692	ENST00000566812		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370677	ENST00000448525		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370677	ENST00000382745		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370677	ENST00000262318		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-intron	ENST00000370677	ENST00000566812		TCGA	RV	READ	TCGA-F5-6465-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000492698	ENST00000448525		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000492698	ENST00000382745		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000492698	ENST00000262318		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-intron	ENST00000492698	ENST00000566812		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
In-frame	ENST00000252999	ENST00000448525		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
In-frame	ENST00000252999	ENST00000382745		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
In-frame	ENST00000252999	ENST00000262318		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
5CDS-intron	ENST00000252999	ENST00000566812		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370692	ENST00000448525		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370692	ENST00000382745		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370692	ENST00000262318		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-intron	ENST00000370692	ENST00000566812		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370677	ENST00000448525		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370677	ENST00000382745		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-3CDS	ENST00000370677	ENST00000262318		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
intron-intron	ENST00000370677	ENST00000566812		TCGA	RV	READ	TCGA-G5-6572-01A	LAMA5	chr20	60900372	-	CLCN7	chr16	1509188	-
Frame-shit	ENST00000308482	ENST00000437219		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000308482	ENST00000309182		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000308482	ENST00000446363		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000308482	ENST00000419248		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000308482	ENST00000409644		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000308482	ENST00000545662		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
intron-3CDS	ENST00000468950	ENST00000437219		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
intron-3CDS	ENST00000468950	ENST00000309182		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
intron-3CDS	ENST00000468950	ENST00000446363		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
intron-3CDS	ENST00000468950	ENST00000419248		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
intron-3CDS	ENST00000468950	ENST00000409644		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
intron-3CDS	ENST00000468950	ENST00000545662		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000289175	ENST00000437219		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000289175	ENST00000309182		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000289175	ENST00000446363		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000289175	ENST00000419248		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000289175	ENST00000409644		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000289175	ENST00000545662		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000244815	ENST00000437219		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000244815	ENST00000309182		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000244815	ENST00000446363		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000244815	ENST00000419248		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000244815	ENST00000409644		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000244815	ENST00000545662		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000392000	ENST00000437219		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000392000	ENST00000309182		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000392000	ENST00000446363		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000392000	ENST00000419248		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000392000	ENST00000409644		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000392000	ENST00000545662		TCGA	RV	READ	TCGA-G5-6572-02A	LRRFIP1	chr2	238617273	+	WDR81	chr17	1635619	+
Frame-shit	ENST00000361175	ENST00000266066		TCGA	RV	READ	TCGA-AG-3731-01A	PAPSS2	chr10	89504988	+	SFRP5	chr10	99529502	-
Frame-shit	ENST00000456849	ENST00000266066		TCGA	RV	READ	TCGA-AG-3731-01A	PAPSS2	chr10	89504988	+	SFRP5	chr10	99529502	-
Frame-shit	ENST00000427144	ENST00000266066		TCGA	RV	READ	TCGA-AG-3731-01A	PAPSS2	chr10	89504988	+	SFRP5	chr10	99529502	-
intron-3CDS	ENST00000482258	ENST00000266066		TCGA	RV	READ	TCGA-AG-3731-01A	PAPSS2	chr10	89504988	+	SFRP5	chr10	99529502	-
Frame-shit	ENST00000241436	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000241436	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000241436	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000352007	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000352007	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
intron-intron	ENST00000352007	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
3UTR-3CDS	ENST00000506928	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
3UTR-3CDS	ENST00000506928	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
3UTR-intron	ENST00000506928	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000515295	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000515295	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000515295	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000508526	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000508526	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
intron-intron	ENST00000508526	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000504026	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000504026	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000504026	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000380481	ENST00000230640		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000380481	ENST00000545714		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000380481	ENST00000504388		TCGA	RV	READ	TCGA-CL-5918-01A	POLK	chr5	74886265	+	SKIV2L2	chr5	54635838	+
Frame-shit	ENST00000299084	ENST00000261722		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
Frame-shit	ENST00000299084	ENST00000535348		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
Frame-shit	ENST00000299084	ENST00000535359		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
Frame-shit	ENST00000299084	ENST00000542200		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
5CDS-5UTR	ENST00000299084	ENST00000561455		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
3UTR-3CDS	ENST00000561205	ENST00000261722		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
3UTR-3CDS	ENST00000561205	ENST00000535348		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
3UTR-3CDS	ENST00000561205	ENST00000535359		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
3UTR-3CDS	ENST00000561205	ENST00000542200		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
3UTR-5UTR	ENST00000561205	ENST00000561455		TCGA	RV	READ	TCGA-CI-6621-01A	SPRED1	chr15	38591748	+	AP3B2	chr15	83358205	-
In-frame	ENST00000252108	ENST00000379554		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000252108	ENST00000424273		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000252108	ENST00000379556		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000252108	ENST00000528567		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000252108	ENST00000525218		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000252108	ENST00000530161		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
5CDS-intron	ENST00000252108	ENST00000447214		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000431736	ENST00000379554		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000431736	ENST00000424273		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000431736	ENST00000379556		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000431736	ENST00000528567		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000431736	ENST00000525218		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000431736	ENST00000530161		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
5CDS-intron	ENST00000431736	ENST00000447214		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000545354	ENST00000379554		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000545354	ENST00000424273		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000545354	ENST00000379556		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000545354	ENST00000528567		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000545354	ENST00000525218		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
In-frame	ENST00000545354	ENST00000530161		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
5CDS-intron	ENST00000545354	ENST00000447214		TCGA	RV	READ	TCGA-AF-2690-01A	UBE4A	chr11	118252238	+	INSC	chr11	15197287	+
Frame-shit	ENST00000431231	ENST00000246657		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000431231	ENST00000579344		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
Frame-shit	ENST00000437668	ENST00000246657		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000437668	ENST00000579344		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
intron-3CDS	ENST00000582409	ENST00000246657		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
intron-5UTR	ENST00000582409	ENST00000579344		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
intron-3CDS	ENST00000443378	ENST00000246657		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
intron-5UTR	ENST00000443378	ENST00000579344		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36584792	+	CCR7	chr17	38715194	-
5CDS-intron	ENST00000373314	ENST00000267101		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373314	ENST00000450146		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373314	ENST00000415288		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373314	ENST00000553131		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373314	ENST00000411731		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373314	ENST00000549832		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373312	ENST00000267101		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373312	ENST00000450146		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373312	ENST00000415288		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373312	ENST00000553131		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373312	ENST00000411731		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000373312	ENST00000549832		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000468379	ENST00000267101		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000468379	ENST00000450146		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000468379	ENST00000415288		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000468379	ENST00000553131		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000468379	ENST00000411731		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000468379	ENST00000549832		TCGA	RV	READ	TCGA-AG-3725-01A	FAM129B	chr9	130267619	-	ERBB3	chr12	56492035	+
intron-5UTR	ENST00000534526	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000534526	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000534526	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000534526	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000534526	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000534526	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000531134	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000531134	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000531134	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000531134	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000531134	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000531134	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000427716	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000427716	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000427716	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000427716	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000427716	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000427716	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000266482	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000266482	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000266482	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000266482	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000266482	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000266482	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000546442	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000546442	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000546442	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000546442	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000546442	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000546442	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525053	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525053	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525053	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000525053	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000525053	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000525053	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000381025	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000381025	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000381025	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-5UTR	ENST00000381025	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000381025	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
intron-intron	ENST00000381025	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000472289	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000472289	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000472289	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-5UTR	ENST00000472289	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000472289	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
5UTR-intron	ENST00000472289	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
3UTR-5UTR	ENST00000473513	ENST00000527185		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
3UTR-5UTR	ENST00000473513	ENST00000528682		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
3UTR-5UTR	ENST00000473513	ENST00000524871		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
3UTR-5UTR	ENST00000473513	ENST00000418526		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
3UTR-intron	ENST00000473513	ENST00000279463		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
3UTR-intron	ENST00000473513	ENST00000524560		TCGA	RV	READ	TCGA-AF-6655-01A	FGD4	chr12	32655272	+	CNTN5	chr11	99426876	+
In-frame	ENST00000439174	ENST00000255559		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
In-frame	ENST00000439174	ENST00000542342		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000439174	ENST00000579988		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000439174	ENST00000579732		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
Frame-shit	ENST00000541118	ENST00000255559		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
Frame-shit	ENST00000541118	ENST00000542342		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000541118	ENST00000579988		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
5CDS-intron	ENST00000541118	ENST00000579732		TCGA	RV	READ	TCGA-EF-5831-01A	GNA13	chr17	63049620	-	SLC39A11	chr17	71027853	-
Frame-shit	ENST00000290341	ENST00000392411		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000290341	ENST00000321280		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000290341	ENST00000428708		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000290341	ENST00000575712		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000290341	ENST00000575245		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000290341	ENST00000435091		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000290341	ENST00000321300		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
5CDS-intron	ENST00000290341	ENST00000573894		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
5CDS-intron	ENST00000290341	ENST00000416299		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000392411		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000321280		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000428708		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000575712		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000575245		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000435091		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
Frame-shit	ENST00000431824	ENST00000321300		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
5CDS-intron	ENST00000431824	ENST00000573894		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
5CDS-intron	ENST00000431824	ENST00000416299		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000392411		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000321280		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000428708		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000575712		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000575245		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000435091		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-3CDS	ENST00000515586	ENST00000321300		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-intron	ENST00000515586	ENST00000573894		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
3UTR-intron	ENST00000515586	ENST00000416299		TCGA	RV	READ	TCGA-CI-6619-01B	IGF2BP1	chr17	47109335	+	BAIAP2	chr17	79073728	+
5CDS-5UTR	ENST00000251879	ENST00000382303		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000251879	ENST00000489369		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000251879	ENST00000382297		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000251879	ENST00000382293		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000414202	ENST00000382303		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-3UTR	ENST00000414202	ENST00000489369		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-5UTR	ENST00000414202	ENST00000382297		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5CDS-intron	ENST00000414202	ENST00000382293		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5UTR-5UTR	ENST00000381532	ENST00000382303		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5UTR-3UTR	ENST00000381532	ENST00000489369		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5UTR-5UTR	ENST00000381532	ENST00000382297		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
5UTR-intron	ENST00000381532	ENST00000382293		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000418622	ENST00000382303		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-3UTR	ENST00000418622	ENST00000489369		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000418622	ENST00000382297		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-intron	ENST00000418622	ENST00000382293		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000449720	ENST00000382303		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-3UTR	ENST00000449720	ENST00000489369		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-5UTR	ENST00000449720	ENST00000382297		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
intron-intron	ENST00000449720	ENST00000382293		TCGA	RV	READ	TCGA-AG-3902-01A	KIAA1432	chr9	5629453	+	KANK1	chr9	676890	+
Frame-shit	ENST00000310300	ENST00000307624		TCGA	RV	READ	TCGA-F5-6465-01A	LRCH4	chr7	100179400	-	ACOT12	chr5	80655857	-
5CDS-intron	ENST00000310300	ENST00000508234		TCGA	RV	READ	TCGA-F5-6465-01A	LRCH4	chr7	100179400	-	ACOT12	chr5	80655857	-
5CDS-intron	ENST00000310300	ENST00000513751		TCGA	RV	READ	TCGA-F5-6465-01A	LRCH4	chr7	100179400	-	ACOT12	chr5	80655857	-
5UTR-3CDS	ENST00000497245	ENST00000307624		TCGA	RV	READ	TCGA-F5-6465-01A	LRCH4	chr7	100179400	-	ACOT12	chr5	80655857	-
5UTR-intron	ENST00000497245	ENST00000508234		TCGA	RV	READ	TCGA-F5-6465-01A	LRCH4	chr7	100179400	-	ACOT12	chr5	80655857	-
5UTR-intron	ENST00000497245	ENST00000513751		TCGA	RV	READ	TCGA-F5-6465-01A	LRCH4	chr7	100179400	-	ACOT12	chr5	80655857	-
Frame-shit	ENST00000371191	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000371191	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000407417	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000407417	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
intron-3CDS	ENST00000479364	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
intron-5UTR	ENST00000479364	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000371189	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000371189	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000403491	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000403491	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000371187	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000371187	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000485903	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000485903	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000371185	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000371185	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
Frame-shit	ENST00000371184	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
5CDS-5UTR	ENST00000371184	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
intron-3CDS	ENST00000357977	ENST00000589717		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
intron-5UTR	ENST00000357977	ENST00000355650		TCGA	RV	READ	TCGA-EI-6509-01A	NFIA	chr1	61554352	+	ZNF253	chr19	20002283	+
In-frame	ENST00000282516	ENST00000544915		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000282516	ENST00000395901		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000282516	ENST00000546179		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000282516	ENST00000311001		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000282516	ENST00000261178		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000282516	ENST00000266503		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
5CDS-intron	ENST00000282516	ENST00000539558		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
5CDS-intron	ENST00000282516	ENST00000542388		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000448238	ENST00000544915		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000448238	ENST00000395901		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000448238	ENST00000546179		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000448238	ENST00000311001		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000448238	ENST00000261178		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
In-frame	ENST00000448238	ENST00000266503		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
5CDS-intron	ENST00000448238	ENST00000539558		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
5CDS-intron	ENST00000448238	ENST00000542388		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-3CDS	ENST00000504430	ENST00000544915		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-3CDS	ENST00000504430	ENST00000395901		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-3CDS	ENST00000504430	ENST00000546179		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-3CDS	ENST00000504430	ENST00000311001		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-3CDS	ENST00000504430	ENST00000261178		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-3CDS	ENST00000504430	ENST00000266503		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-intron	ENST00000504430	ENST00000539558		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
3UTR-intron	ENST00000504430	ENST00000542388		TCGA	RV	READ	TCGA-AG-3731-01A	NIPBL	chr5	36972143	+	ARNTL2	chr12	27521195	+
Frame-shit	ENST00000224950	ENST00000371142		TCGA	RV	READ	TCGA-CI-6624-01C	OBFC1	chr10	105677220	-	TM9SF3	chr10	98336586	-
5CDS-intron	ENST00000224950	ENST00000490192		TCGA	RV	READ	TCGA-CI-6624-01C	OBFC1	chr10	105677220	-	TM9SF3	chr10	98336586	-
In-frame	ENST00000369764	ENST00000371142		TCGA	RV	READ	TCGA-CI-6624-01C	OBFC1	chr10	105677220	-	TM9SF3	chr10	98336586	-
5CDS-intron	ENST00000369764	ENST00000490192		TCGA	RV	READ	TCGA-CI-6624-01C	OBFC1	chr10	105677220	-	TM9SF3	chr10	98336586	-
5UTR-3CDS	ENST00000466828	ENST00000371142		TCGA	RV	READ	TCGA-CI-6624-01C	OBFC1	chr10	105677220	-	TM9SF3	chr10	98336586	-
5UTR-intron	ENST00000466828	ENST00000490192		TCGA	RV	READ	TCGA-CI-6624-01C	OBFC1	chr10	105677220	-	TM9SF3	chr10	98336586	-
intron-3CDS	ENST00000449833	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449833	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449833	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449833	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449833	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449833	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000449833	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409161	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409161	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409161	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409161	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409161	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409161	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000409161	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000423696	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000423696	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000423696	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000423696	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000423696	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000423696	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000423696	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000338508	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000338508	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000338508	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000338508	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000338508	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000338508	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000338508	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409530	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409530	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409530	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409530	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409530	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000409530	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000409530	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449116	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449116	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449116	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449116	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449116	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000449116	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000449116	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000357171	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000357171	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000357171	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000357171	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000357171	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000357171	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000357171	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000468619	ENST00000263846		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000468619	ENST00000540677		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000468619	ENST00000539008		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000468619	ENST00000542836		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000468619	ENST00000542670		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-3CDS	ENST00000468619	ENST00000535826		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
intron-intron	ENST00000468619	ENST00000540831		TCGA	RV	READ	TCGA-DT-5265-01A	SHANK2	chr11	70935743	-	SYT7	chr11	61323679	-
In-frame	ENST00000361906	ENST00000359867		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
In-frame	ENST00000361906	ENST00000396832		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
In-frame	ENST00000361906	ENST00000400206		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
In-frame	ENST00000361906	ENST00000403904		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
In-frame	ENST00000361906	ENST00000413574		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
In-frame	ENST00000361906	ENST00000405675		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
5CDS-intron	ENST00000361906	ENST00000498529		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000361684	ENST00000359867		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000361684	ENST00000396832		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000361684	ENST00000400206		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000361684	ENST00000403904		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000361684	ENST00000413574		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
Frame-shit	ENST00000361684	ENST00000405675		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
5CDS-intron	ENST00000361684	ENST00000498529		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000504337	ENST00000359867		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000504337	ENST00000396832		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000504337	ENST00000400206		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000504337	ENST00000403904		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000504337	ENST00000413574		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-3CDS	ENST00000504337	ENST00000405675		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
intron-intron	ENST00000504337	ENST00000498529		TCGA	RV	READ	TCGA-AF-5654-01A	TMEM184B	chr22	38620792	-	CSNK1E	chr22	38699253	-
In-frame	ENST00000343526	ENST00000288602		TCGA	RV	READ	TCGA-F5-6464-01A	TRIM24	chr7	138255748	+	BRAF	chr7	140550012	-
In-frame	ENST00000415680	ENST00000288602		TCGA	RV	READ	TCGA-F5-6464-01A	TRIM24	chr7	138255748	+	BRAF	chr7	140550012	-
intron-3CDS	ENST00000497516	ENST00000288602		TCGA	RV	READ	TCGA-F5-6464-01A	TRIM24	chr7	138255748	+	BRAF	chr7	140550012	-
In-frame	ENST00000376634	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376634	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376634	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376634	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376634	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376634	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
5CDS-intron	ENST00000376634	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376636	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376636	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376636	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376636	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376636	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000376636	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
5CDS-intron	ENST00000376636	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000360280	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000360280	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000360280	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000360280	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000360280	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000360280	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
5CDS-intron	ENST00000360280	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000357409	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000357409	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000357409	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000357409	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000357409	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
In-frame	ENST00000357409	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
5CDS-intron	ENST00000357409	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000423463	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000423463	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000423463	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000423463	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000423463	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000423463	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-intron	ENST00000423463	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000484581	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000484581	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000484581	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000484581	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000484581	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000484581	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-intron	ENST00000484581	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000376646	ENST00000378814		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000376646	ENST00000259711		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000376646	ENST00000378843		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000376646	ENST00000378826		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000376646	ENST00000378816		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-3CDS	ENST00000376646	ENST00000502704		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-intron	ENST00000376646	ENST00000503342		TCGA	RV	READ	TCGA-AH-6549-01A	VPS13A	chr9	79792720	+	KIF13A	chr6	17987375	-
intron-intron	ENST00000464611	ENST00000514455		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000511566		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000376817		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000464611	ENST00000512805		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000504726		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000511900		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000456394		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000464611	ENST00000505461		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000514455		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000511566		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000376817		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-5UTR	ENST00000331789	ENST00000512805		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000504726		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000511900		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000456394		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
intron-intron	ENST00000331789	ENST00000505461		TCGA	RV	READ	TCGA-AH-6903-01A	ACTB	chr7	5567255	-	GNB2L1	chr5	180670914	-
In-frame	ENST00000602281	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000602281	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000602281	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000539444	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000539444	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000539444	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3CDS	ENST00000602873	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3CDS	ENST00000602873	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3UTR	ENST00000602873	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000366633	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000366633	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000366633	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000366636	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000366636	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000366636	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000535983	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000535983	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000535983	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000537876	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000537876	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000537876	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5UTR-3CDS	ENST00000366637	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5UTR-3CDS	ENST00000366637	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5UTR-3UTR	ENST00000366637	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000439617	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
In-frame	ENST00000439617	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
5CDS-3UTR	ENST00000439617	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3CDS	ENST00000427560	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3CDS	ENST00000427560	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3UTR	ENST00000427560	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3CDS	ENST00000317586	ENST00000366928		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3CDS	ENST00000317586	ENST00000366927		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-3UTR	ENST00000317586	ENST00000483635		TCGA	RV	READ	TCGA-AF-4110-01A	DISC1	chr1	231837770	+	LYPLAL1	chr1	219352489	+
intron-intron	ENST00000454903	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000454903	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000454903	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000406242	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000406242	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000406242	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000604404	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000604404	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000604404	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000435734	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000435734	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000435734	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000603181	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000603181	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000603181	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000604255	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000604255	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000604255	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000346446	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000346446	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000346446	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000344013	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000344013	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
3UTR-intron	ENST00000344013	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000603449	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000603449	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000603449	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000406988	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000406988	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000406988	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605550	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605550	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605550	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000604804	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000604804	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000604804	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605552	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605552	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605552	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000535103	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000535103	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000535103	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000603524	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000603524	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000603524	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000604621	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000604621	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000604621	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605677	ENST00000354817		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605677	ENST00000527202		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
intron-intron	ENST00000605677	ENST00000532502		TCGA	RV	READ	TCGA-F5-6861-01A	FXYD3	chr19	35614557	+	FAR1	chr11	13744912	+
Frame-shit	ENST00000380958	ENST00000540661		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
5CDS-intron	ENST00000380958	ENST00000381801		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
5CDS-intron	ENST00000380958	ENST00000482345		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-3CDS	ENST00000399613	ENST00000540661		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-intron	ENST00000399613	ENST00000381801		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-intron	ENST00000399613	ENST00000482345		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-3CDS	ENST00000282391	ENST00000540661		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-intron	ENST00000282391	ENST00000381801		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-intron	ENST00000282391	ENST00000482345		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-3CDS	ENST00000483842	ENST00000540661		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-intron	ENST00000483842	ENST00000381801		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
intron-intron	ENST00000483842	ENST00000482345		TCGA	RV	READ	TCGA-F5-6571-01A	PAN3	chr13	28771483	+	MTMR6	chr13	25802719	-
In-frame	ENST00000334005	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000334005	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-intron	ENST00000334005	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000378473	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000378473	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-intron	ENST00000378473	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000278655	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000278655	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-intron	ENST00000278655	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000414679	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000414679	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-intron	ENST00000414679	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
3UTR-3CDS	ENST00000492632	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
3UTR-3CDS	ENST00000492632	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
3UTR-intron	ENST00000492632	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000378501	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000378501	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-intron	ENST00000378501	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000378493	ENST00000334062		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
In-frame	ENST00000378493	ENST00000389544		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-intron	ENST00000378493	ENST00000542651		TCGA	RV	READ	TCGA-G5-6641-01A	PLCB4	chr20	9424890	+	RASA3	chr13	114762215	-
5CDS-5UTR	ENST00000584667	ENST00000314256		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000584667	ENST00000579208		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000584667	ENST00000375248		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000584667	ENST00000583795		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000355423	ENST00000314256		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000355423	ENST00000579208		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000355423	ENST00000375248		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000355423	ENST00000583795		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
3UTR-5UTR	ENST00000579864	ENST00000314256		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
3UTR-5UTR	ENST00000579864	ENST00000579208		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
3UTR-intron	ENST00000579864	ENST00000375248		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
3UTR-intron	ENST00000579864	ENST00000583795		TCGA	RV	READ	TCGA-AG-3731-01A	SAP30BP	chr17	73664705	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000431231	ENST00000336308		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000431231	ENST00000578232		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000431231	ENST00000544210		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000431231	ENST00000394250		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000431231	ENST00000580611		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000437668	ENST00000336308		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000437668	ENST00000578232		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000437668	ENST00000544210		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000437668	ENST00000394250		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000437668	ENST00000580611		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000582409	ENST00000336308		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
intron-intron	ENST00000582409	ENST00000578232		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000582409	ENST00000544210		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000582409	ENST00000394250		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000582409	ENST00000580611		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5UTR-5UTR	ENST00000443378	ENST00000336308		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5UTR-intron	ENST00000443378	ENST00000578232		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5UTR-5UTR	ENST00000443378	ENST00000544210		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5UTR-5UTR	ENST00000443378	ENST00000394250		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5UTR-5UTR	ENST00000443378	ENST00000580611		TCGA	RV	READ	TCGA-EI-6509-01A	ARHGAP23	chr17	36614507	+	STARD3	chr17	37809734	+
5UTR-3CDS	ENST00000261681	ENST00000315266		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000261681	ENST00000478722		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000261681	ENST00000459628		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000261681	ENST00000543237		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000261681	ENST00000305960		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3UTR	ENST00000261681	ENST00000544752		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000555925	ENST00000315266		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000555925	ENST00000478722		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000555925	ENST00000459628		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000555925	ENST00000543237		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000555925	ENST00000305960		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3UTR	ENST00000555925	ENST00000544752		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
3UTR-3CDS	ENST00000554911	ENST00000315266		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
3UTR-3CDS	ENST00000554911	ENST00000478722		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
3UTR-3CDS	ENST00000554911	ENST00000459628		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
3UTR-3CDS	ENST00000554911	ENST00000543237		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
3UTR-3CDS	ENST00000554911	ENST00000305960		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
3UTR-3UTR	ENST00000554911	ENST00000544752		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000556345	ENST00000315266		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000556345	ENST00000478722		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000556345	ENST00000459628		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000556345	ENST00000543237		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3CDS	ENST00000556345	ENST00000305960		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
5UTR-3UTR	ENST00000556345	ENST00000544752		TCGA	RV	READ	TCGA-F5-6814-01A	MPP5	chr14	67708250	+	GPHN	chr14	67346657	+
In-frame	ENST00000265631	ENST00000359314		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
5CDS-intron	ENST00000265631	ENST00000486693		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
In-frame	ENST00000416240	ENST00000359314		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
5CDS-intron	ENST00000416240	ENST00000486693		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
Frame-shit	ENST00000542654	ENST00000359314		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
5CDS-intron	ENST00000542654	ENST00000486693		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
intron-3CDS	ENST00000494085	ENST00000359314		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
intron-intron	ENST00000494085	ENST00000486693		TCGA	RV	READ	TCGA-EI-6510-01A	SLC25A13	chr7	95813589	-	CD2AP	chr6	47512342	+
In-frame	ENST00000272313	ENST00000389048		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
In-frame	ENST00000272313	ENST00000431873		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
5CDS-intron	ENST00000272313	ENST00000498037		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
In-frame	ENST00000407823	ENST00000389048		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
In-frame	ENST00000407823	ENST00000431873		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
5CDS-intron	ENST00000407823	ENST00000498037		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
In-frame	ENST00000345102	ENST00000389048		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
In-frame	ENST00000345102	ENST00000431873		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
5CDS-intron	ENST00000345102	ENST00000498037		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
intron-3CDS	ENST00000477749	ENST00000389048		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
intron-3CDS	ENST00000477749	ENST00000431873		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
intron-intron	ENST00000477749	ENST00000498037		TCGA	RV	READ	TCGA-F5-6864-01A	SMEK2	chr2	55804451	-	ALK	chr2	29940563	-
Frame-shit	ENST00000397517	ENST00000376503		TCGA	RV	READ	TCGA-AF-5654-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
Frame-shit	ENST00000539966	ENST00000376503		TCGA	RV	READ	TCGA-AF-5654-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
intron-3CDS	ENST00000481288	ENST00000376503		TCGA	RV	READ	TCGA-AF-5654-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
intron-3CDS	ENST00000376547	ENST00000376503		TCGA	RV	READ	TCGA-AF-5654-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
In-frame	ENST00000354532	ENST00000354216		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000354532	ENST00000369892		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000354532	ENST00000358711		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000354532	ENST00000369908		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000354532	ENST00000492660		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000599846	ENST00000354216		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000599846	ENST00000369892		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000599846	ENST00000358711		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000599846	ENST00000369908		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000599846	ENST00000492660		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000354216		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000369892		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000358711		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000596957	ENST00000369908		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
intron-intron	ENST00000596957	ENST00000492660		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000347545	ENST00000354216		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000347545	ENST00000369892		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000347545	ENST00000358711		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000347545	ENST00000369908		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000347545	ENST00000492660		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000378152	ENST00000354216		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000378152	ENST00000369892		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000378152	ENST00000358711		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000378152	ENST00000369908		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000378152	ENST00000492660		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000337665	ENST00000354216		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000337665	ENST00000369892		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
Frame-shit	ENST00000337665	ENST00000358711		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000337665	ENST00000369908		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000337665	ENST00000492660		TCGA	RV	READ	TCGA-G5-6572-01A	ARHGEF1	chr19	42400555	+	UCKL1	chr20	62572561	-
In-frame	ENST00000394524	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000394524	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000454265	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000454265	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000394526	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000394526	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000429180	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000429180	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000296402	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000296402	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000418639	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000418639	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000511664	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000511664	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
Frame-shit	ENST00000342666	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000342666	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000515496	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000515496	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000514328	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000514328	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000394522	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000394522	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000505990	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000505990	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000379773	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000379773	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000508738	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
5CDS-intron	ENST00000508738	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
intron-3CDS	ENST00000509907	ENST00000357947		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
intron-intron	ENST00000509907	ENST00000469598		TCGA	RV	READ	TCGA-F5-6864-01A	CAMK2D	chr4	114421619	-	TLL2	chr10	98192719	-
In-frame	ENST00000377026	ENST00000376979		TCGA	RV	READ	TCGA-DC-6157-01A	NAPB	chr20	23375559	-	CST9L	chr20	23546724	-
In-frame	ENST00000398425	ENST00000376979		TCGA	RV	READ	TCGA-DC-6157-01A	NAPB	chr20	23375559	-	CST9L	chr20	23546724	-
In-frame	ENST00000432543	ENST00000376979		TCGA	RV	READ	TCGA-DC-6157-01A	NAPB	chr20	23375559	-	CST9L	chr20	23546724	-
5UTR-3CDS	ENST00000472855	ENST00000376979		TCGA	RV	READ	TCGA-DC-6157-01A	NAPB	chr20	23375559	-	CST9L	chr20	23546724	-
In-frame	ENST00000500597	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
In-frame	ENST00000407977	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
Frame-shit	ENST00000583753	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
Frame-shit	ENST00000584437	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
Frame-shit	ENST00000577716	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
intron-3CDS	ENST00000581868	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
intron-3CDS	ENST00000577625	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
intron-3CDS	ENST00000580014	ENST00000323777		TCGA	RV	READ	TCGA-AF-5654-01A	RNF43	chr17	56492687	-	HSF5	chr17	56499791	-
Frame-shit	ENST00000338432	ENST00000242576		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000338432	ENST00000336865		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377854	ENST00000242576		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377854	ENST00000336865		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377848	ENST00000242576		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377848	ENST00000336865		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000242576		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000336865		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000242576		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000336865		TCGA	RV	READ	TCGA-EF-5830-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
5CDS-5UTR	ENST00000334126	ENST00000301765		TCGA	RV	READ	TCGA-DC-6158-01A	C2CD3	chr11	73753099	-	VPS37C	chr11	60906307	-
5CDS-5UTR	ENST00000313663	ENST00000301765		TCGA	RV	READ	TCGA-DC-6158-01A	C2CD3	chr11	73753099	-	VPS37C	chr11	60906307	-
intron-5UTR	ENST00000542452	ENST00000301765		TCGA	RV	READ	TCGA-DC-6158-01A	C2CD3	chr11	73753099	-	VPS37C	chr11	60906307	-
intron-5UTR	ENST00000539061	ENST00000301765		TCGA	RV	READ	TCGA-DC-6158-01A	C2CD3	chr11	73753099	-	VPS37C	chr11	60906307	-
5CDS-5UTR	ENST00000380958	ENST00000380615		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
5CDS-5UTR	ENST00000380958	ENST00000380617		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
5CDS-5UTR	ENST00000399613	ENST00000380615		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
5CDS-5UTR	ENST00000399613	ENST00000380617		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
intron-5UTR	ENST00000282391	ENST00000380615		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
intron-5UTR	ENST00000282391	ENST00000380617		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
intron-5UTR	ENST00000483842	ENST00000380615		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
intron-5UTR	ENST00000483842	ENST00000380617		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28752072	+	KATNAL1	chr13	30857928	-
5CDS-5UTR	ENST00000522695	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000522695	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000524300	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000524300	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000523558	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000523558	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000521210	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000521210	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000355780	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000355780	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000519961	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000519961	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000521727	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000521727	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000521451	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
intron-5UTR	ENST00000521451	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000522509	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000522509	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000517542	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000517542	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000524104	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000524104	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5UTR-5UTR	ENST00000522962	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5UTR-5UTR	ENST00000522962	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000521419	ENST00000315367		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000521419	ENST00000519516		TCGA	RV	READ	TCGA-F5-6813-01A	STAU2	chr8	74585342	-	PLEKHF2	chr8	96166259	+
5CDS-5UTR	ENST00000011684	ENST00000258412		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000011684	ENST00000445635		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000011684	ENST00000396809		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000011684	ENST00000444881		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000536531	ENST00000258412		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-intron	ENST00000536531	ENST00000445635		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000536531	ENST00000396809		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000536531	ENST00000444881		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000396988	ENST00000258412		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000396988	ENST00000445635		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000396988	ENST00000396809		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000396988	ENST00000444881		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000449001	ENST00000258412		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000449001	ENST00000445635		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000449001	ENST00000396809		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-5UTR	ENST00000449001	ENST00000444881		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000538208	ENST00000258412		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-intron	ENST00000538208	ENST00000445635		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000538208	ENST00000396809		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000538208	ENST00000444881		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000304581	ENST00000258412		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-intron	ENST00000304581	ENST00000445635		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000304581	ENST00000396809		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
intron-5UTR	ENST00000304581	ENST00000444881		TCGA	RV	READ	TCGA-AG-3732-01A	PLEKHG6	chr12	6428274	+	TMBIM1	chr2	219146904	-
5CDS-intron	ENST00000418929	ENST00000598155		TCGA	RV	READ	TCGA-DY-A1DF-01A	PRR12	chr19	50119476	+	SYMPK	chr19	46357765	-
5CDS-5UTR	ENST00000418929	ENST00000245934		TCGA	RV	READ	TCGA-DY-A1DF-01A	PRR12	chr19	50119476	+	SYMPK	chr19	46357765	-
5CDS-intron	ENST00000338110	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000338110	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000395248	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000395248	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000575627	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000575627	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000566897	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000566897	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000569545	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000569545	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000563060	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000563060	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000412304	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000412304	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000564546	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000564546	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000564595	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000564595	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000569798	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000569798	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000395240	ENST00000484427		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
intron-intron	ENST00000395240	ENST00000371764		TCGA	RV	READ	TCGA-AH-6549-01A	ALDOA	chr16	30081734	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000221347	ENST00000404460		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000303908		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000409158		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000403716		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000234115		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000439822		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000487980		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000438882		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000538982		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000409612		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000221347	ENST00000409279		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000404460		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000303908		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000409158		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000403716		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000234115		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000439822		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000487980		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000438882		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000538982		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000409612		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000595713	ENST00000409279		TCGA	RV	READ	TCGA-EI-6882-01A	FCGBP	chr19	40353964	-	PLEKHB2	chr2	131876464	+
Frame-shit	ENST00000311191	ENST00000258662		TCGA	RV	READ	TCGA-AF-2693-01A	LRCH1	chr13	47127838	+	NUDT15	chr13	48615056	+
Frame-shit	ENST00000389798	ENST00000258662		TCGA	RV	READ	TCGA-AF-2693-01A	LRCH1	chr13	47127838	+	NUDT15	chr13	48615056	+
Frame-shit	ENST00000389797	ENST00000258662		TCGA	RV	READ	TCGA-AF-2693-01A	LRCH1	chr13	47127838	+	NUDT15	chr13	48615056	+
5CDS-3UTR	ENST00000448838	ENST00000527001		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000257831		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000450654		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000530286		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000533754		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000531728		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000531794		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000448838	ENST00000527935		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-3UTR	ENST00000227868	ENST00000527001		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000257831		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000450654		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000530286		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000533754		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000531728		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000531794		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000227868	ENST00000527935		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-3UTR	ENST00000430469	ENST00000527001		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000257831		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000450654		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000530286		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000533754		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000531728		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000531794		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000430469	ENST00000527935		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-3UTR	ENST00000477173	ENST00000527001		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000257831		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000450654		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000530286		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000533754		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000531728		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000531794		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
intron-5UTR	ENST00000477173	ENST00000527935		TCGA	RV	READ	TCGA-AG-3731-01A	PDHX	chr11	34969153	+	EHF	chr11	34664175	+
In-frame	ENST00000413379	ENST00000263269		TCGA	RV	READ	TCGA-AG-3731-01A	SAE1	chr19	47634285	+	GRIN2D	chr19	48945026	+
intron-3CDS	ENST00000540850	ENST00000263269		TCGA	RV	READ	TCGA-AG-3731-01A	SAE1	chr19	47634285	+	GRIN2D	chr19	48945026	+
In-frame	ENST00000598840	ENST00000263269		TCGA	RV	READ	TCGA-AG-3731-01A	SAE1	chr19	47634285	+	GRIN2D	chr19	48945026	+
In-frame	ENST00000270225	ENST00000263269		TCGA	RV	READ	TCGA-AG-3731-01A	SAE1	chr19	47634285	+	GRIN2D	chr19	48945026	+
In-frame	ENST00000392776	ENST00000263269		TCGA	RV	READ	TCGA-AG-3731-01A	SAE1	chr19	47634285	+	GRIN2D	chr19	48945026	+
intron-intron	ENST00000355666	ENST00000398158		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000355666	ENST00000398165		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000355666	ENST00000359624		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000355666	ENST00000352178		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000355666	ENST00000398168		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000355666	ENST00000544202		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000355666	ENST00000470912		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000399017	ENST00000398158		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399017	ENST00000398165		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399017	ENST00000359624		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399017	ENST00000352178		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399017	ENST00000398168		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000399017	ENST00000544202		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399017	ENST00000470912		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000354749	ENST00000398158		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000354749	ENST00000398165		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000354749	ENST00000359624		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000354749	ENST00000352178		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000354749	ENST00000398168		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000354749	ENST00000544202		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000354749	ENST00000470912		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000479930	ENST00000398158		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000479930	ENST00000398165		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000479930	ENST00000359624		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000479930	ENST00000352178		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000479930	ENST00000398168		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000479930	ENST00000544202		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000479930	ENST00000470912		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000540756	ENST00000398158		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000540756	ENST00000398165		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000540756	ENST00000359624		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000540756	ENST00000352178		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000540756	ENST00000398168		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000540756	ENST00000544202		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000540756	ENST00000470912		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000399010	ENST00000398158		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399010	ENST00000398165		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399010	ENST00000359624		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399010	ENST00000352178		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399010	ENST00000398168		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-intron	ENST00000399010	ENST00000544202		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
intron-5UTR	ENST00000399010	ENST00000470912		TCGA	RV	READ	TCGA-DC-4745-01A	TTC3	chr21	38445773	+	CBS	chr21	44493451	-
Frame-shit	ENST00000380345	ENST00000368226		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000380345	ENST00000368227		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000380345	ENST00000532331		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000380345	ENST00000368213		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000380345	ENST00000368210		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000380345	ENST00000368215		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000380345	ENST00000368207		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
5CDS-5UTR	ENST00000380345	ENST00000524481		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
5CDS-intron	ENST00000380345	ENST00000525459		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000368226		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000368227		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000532331		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000368213		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000368210		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000368215		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000515007	ENST00000368207		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
5CDS-5UTR	ENST00000515007	ENST00000524481		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
5CDS-intron	ENST00000515007	ENST00000525459		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000368226		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000368227		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000532331		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000368213		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000368210		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000368215		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-3CDS	ENST00000515349	ENST00000368207		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-5UTR	ENST00000515349	ENST00000524481		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
intron-intron	ENST00000515349	ENST00000525459		TCGA	RV	READ	TCGA-EI-7002-01A	LHFPL2	chr5	77805607	-	PTPRK	chr6	128411137	-
Frame-shit	ENST00000264968	ENST00000327896		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000264968	ENST00000417561		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000264968	ENST00000490605		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000264968	ENST00000393526		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000264968	ENST00000470789		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000393487	ENST00000327896		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000393487	ENST00000417561		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000393487	ENST00000490605		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000393487	ENST00000393526		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000393487	ENST00000470789		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000414521	ENST00000327896		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000414521	ENST00000417561		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000414521	ENST00000490605		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000414521	ENST00000393526		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000414521	ENST00000470789		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000409391	ENST00000327896		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000409391	ENST00000417561		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000409391	ENST00000490605		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000409391	ENST00000393526		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
5CDS-intron	ENST00000409391	ENST00000470789		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000461884	ENST00000327896		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000461884	ENST00000417561		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000461884	ENST00000490605		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000461884	ENST00000393526		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000461884	ENST00000470789		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000495056	ENST00000327896		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000495056	ENST00000417561		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-3CDS	ENST00000495056	ENST00000490605		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000495056	ENST00000393526		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
intron-intron	ENST00000495056	ENST00000470789		TCGA	RV	READ	TCGA-EI-6885-01A	MGAT4A	chr2	99342702	-	FAM178B	chr2	97568444	-
Frame-shit	ENST00000368226	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368226	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000356698		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000368317		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	READ	TCGA-DT-5265-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-intron	ENST00000379056	ENST00000492661		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000379056	ENST00000460393		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000379056	ENST00000382989		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000379056	ENST00000462745		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000379056	ENST00000493237		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000379056	ENST00000360490		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000379056	ENST00000477669		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000492661		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000460393		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000382989		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000462745		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000493237		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000360490		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000529421	ENST00000477669		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000492661		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000460393		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000382989		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000462745		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000493237		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000360490		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000530705	ENST00000477669		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000492661		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000460393		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000382989		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000462745		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000493237		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000360490		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379060	ENST00000477669		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000492661		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000460393		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000382989		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000462745		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000493237		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000360490		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000379055	ENST00000477669		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000492661		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000460393		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000382989		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000462745		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000493237		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000360490		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
intron-intron	ENST00000309246	ENST00000477669		TCGA	RV	READ	TCGA-DY-A1DD-01A	TPT1	chr13	45911008	-	MME	chr3	154801733	+
5CDS-intron	ENST00000358465	ENST00000260502		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-5UTR	ENST00000358465	ENST00000370244		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358465	ENST00000370243		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358465	ENST00000370247		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358465	ENST00000539242		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000358465	ENST00000466632		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000369543	ENST00000260502		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-5UTR	ENST00000369543	ENST00000370244		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000369543	ENST00000370243		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000369543	ENST00000370247		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000369543	ENST00000539242		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5CDS-intron	ENST00000369543	ENST00000466632		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000450349	ENST00000260502		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-5UTR	ENST00000450349	ENST00000370244		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000450349	ENST00000370243		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000450349	ENST00000370247		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000450349	ENST00000539242		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000450349	ENST00000466632		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000476908	ENST00000260502		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-5UTR	ENST00000476908	ENST00000370244		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000476908	ENST00000370243		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000476908	ENST00000370247		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000476908	ENST00000539242		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
intron-intron	ENST00000476908	ENST00000466632		TCGA	RV	READ	TCGA-AG-4021-01A	TRIM33	chr1	115053172	-	BCAR3	chr1	94171698	-
5UTR-3CDS	ENST00000358183	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000358183	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000358183	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000414043	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000414043	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000414043	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000361571	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000361571	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000361571	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000572543	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000572543	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000572543	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
Frame-shit	ENST00000381311	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
Frame-shit	ENST00000381311	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
Frame-shit	ENST00000381311	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000348066	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000348066	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
5UTR-3CDS	ENST00000348066	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000571831	ENST00000336890		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000571831	ENST00000333070		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
intron-3CDS	ENST00000571831	ENST00000373564		TCGA	RV	READ	TCGA-AG-3731-01A	CAMTA2	chr17	4890888	-	LCK	chr1	32745272	+
3UTR-intron	ENST00000263645	ENST00000322776		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000263645	ENST00000532303		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000263645	ENST00000529927		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000263645	ENST00000415352		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
3UTR-intron	ENST00000263645	ENST00000526169		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000492627	ENST00000322776		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000492627	ENST00000532303		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000492627	ENST00000529927		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000492627	ENST00000415352		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000492627	ENST00000526169		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000381036	ENST00000322776		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000381036	ENST00000532303		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000381036	ENST00000529927		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000381036	ENST00000415352		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000381036	ENST00000526169		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000526072	ENST00000322776		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000526072	ENST00000532303		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000526072	ENST00000529927		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000526072	ENST00000415352		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000526072	ENST00000526169		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524805	ENST00000322776		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524805	ENST00000532303		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524805	ENST00000529927		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524805	ENST00000415352		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524805	ENST00000526169		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000481687	ENST00000322776		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000481687	ENST00000532303		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000481687	ENST00000529927		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000481687	ENST00000415352		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
intron-intron	ENST00000481687	ENST00000526169		TCGA	RV	READ	TCGA-AG-3725-01A	CD81	chr11	2418627	+	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000511181	ENST00000216297		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000511181	ENST00000555943		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000261416	ENST00000216297		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000261416	ENST00000555943		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000513539	ENST00000216297		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000513539	ENST00000555943		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000509579	ENST00000216297		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000509579	ENST00000555943		TCGA	RV	READ	TCGA-DY-A1DD-01A	HEXB	chr5	74017113	+	SUPT16H	chr14	21829491	-
In-frame	ENST00000359947	ENST00000534993		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000543805		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000397071		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000335125		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000558753		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000537912		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000545240		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000359947	ENST00000382755		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
In-frame	ENST00000438120	ENST00000534993		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000543805		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000397071		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000335125		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000558753		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000537912		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000545240		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000438120	ENST00000382755		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
In-frame	ENST00000372413	ENST00000534993		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000543805		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000397071		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000335125		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000558753		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000537912		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000545240		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372413	ENST00000382755		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
In-frame	ENST00000372414	ENST00000534993		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000543805		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000397071		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000335125		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000558753		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000537912		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000545240		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000372414	ENST00000382755		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
In-frame	ENST00000422171	ENST00000534993		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000543805		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000397071		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000335125		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000558753		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000537912		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000545240		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
5CDS-intron	ENST00000422171	ENST00000382755		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-3CDS	ENST00000496447	ENST00000534993		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000543805		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000397071		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000335125		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000558753		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000537912		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000545240		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
3UTR-intron	ENST00000496447	ENST00000382755		TCGA	RV	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4L2	chr14	24464241	+
intron-3CDS	ENST00000264659	ENST00000355612		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36728915	-	KRT39	chr17	39115111	-
intron-3CDS	ENST00000578925	ENST00000355612		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36728915	-	KRT39	chr17	39115111	-
5UTR-3CDS	ENST00000398579	ENST00000355612		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36728915	-	KRT39	chr17	39115111	-
In-frame	ENST00000310924	ENST00000439730		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
In-frame	ENST00000310924	ENST00000576910		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
In-frame	ENST00000310924	ENST00000393456		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
In-frame	ENST00000310924	ENST00000415811		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
In-frame	ENST00000310924	ENST00000575949		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
In-frame	ENST00000310924	ENST00000225567		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000576768	ENST00000439730		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000576768	ENST00000576910		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000576768	ENST00000393456		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000576768	ENST00000415811		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000576768	ENST00000575949		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000576768	ENST00000225567		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000340848	ENST00000439730		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000340848	ENST00000576910		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000340848	ENST00000393456		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000340848	ENST00000415811		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000340848	ENST00000575949		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000340848	ENST00000225567		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000572862	ENST00000439730		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000572862	ENST00000576910		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000572862	ENST00000393456		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000572862	ENST00000415811		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000572862	ENST00000575949		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000572862	ENST00000225567		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000570373	ENST00000439730		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000570373	ENST00000576910		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000570373	ENST00000393456		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000570373	ENST00000415811		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000570373	ENST00000575949		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000570373	ENST00000225567		TCGA	RV	READ	TCGA-AF-A56L-01A	TBC1D16	chr17	77983959	-	GOSR2	chr17	45006886	+
intron-3CDS	ENST00000530927	ENST00000321196		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
intron-3CDS	ENST00000530927	ENST00000548305		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
intron-3CDS	ENST00000530927	ENST00000549919		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
Frame-shit	ENST00000380815	ENST00000321196		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
Frame-shit	ENST00000380815	ENST00000548305		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
Frame-shit	ENST00000380815	ENST00000549919		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
intron-3CDS	ENST00000467288	ENST00000321196		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
intron-3CDS	ENST00000467288	ENST00000548305		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
intron-3CDS	ENST00000467288	ENST00000549919		TCGA	RV	READ	TCGA-BM-6198-01A	GMDS	chr6	2245555	-	TMTC2	chr12	83324210	+
In-frame	ENST00000534894	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000534894	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000534894	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000536810	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000536810	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000536810	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000545257	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000545257	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000545257	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355995	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355995	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000355995	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000543371	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000543371	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000543371	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355717	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000355717	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000355717	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000538897	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000538897	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000538897	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000349937	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000349937	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000349937	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369397	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369397	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369397	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000352065	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000352065	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000352065	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369395	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
In-frame	ENST00000369395	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5CDS-intron	ENST00000369395	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000542695	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5UTR-3CDS	ENST00000542695	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
5UTR-intron	ENST00000542695	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369389	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369389	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000369389	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369386	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000369386	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000369386	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000466338	ENST00000432306		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-3CDS	ENST00000466338	ENST00000393077		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
intron-intron	ENST00000466338	ENST00000483122		TCGA	RV	READ	TCGA-AG-3731-01A	TCF7L2	chr10	114799885	+	VTI1A	chr10	114286846	+
Frame-shit	ENST00000380958	ENST00000382592		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
Frame-shit	ENST00000380958	ENST00000542899		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
5CDS-intron	ENST00000380958	ENST00000472754		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
5UTR-3CDS	ENST00000399613	ENST00000382592		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
5UTR-3CDS	ENST00000399613	ENST00000542899		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
5UTR-intron	ENST00000399613	ENST00000472754		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
intron-3CDS	ENST00000282391	ENST00000382592		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
intron-3CDS	ENST00000282391	ENST00000542899		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
intron-intron	ENST00000282391	ENST00000472754		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
intron-3CDS	ENST00000483842	ENST00000382592		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
intron-3CDS	ENST00000483842	ENST00000542899		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
intron-intron	ENST00000483842	ENST00000472754		TCGA	RV	READ	TCGA-DC-6154-01A	PAN3	chr13	28713224	+	LATS2	chr13	21557945	-
Frame-shit	ENST00000368226	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368226	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000356698		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000368317		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	READ	TCGA-AF-6136-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
In-frame	ENST00000336061	ENST00000331710		TCGA	RV	READ	TCGA-EF-5830-01A	RASSF3	chr12	65004523	+	TBK1	chr12	64889263	+
In-frame	ENST00000542104	ENST00000331710		TCGA	RV	READ	TCGA-EF-5830-01A	RASSF3	chr12	65004523	+	TBK1	chr12	64889263	+
3UTR-3CDS	ENST00000540088	ENST00000331710		TCGA	RV	READ	TCGA-EF-5830-01A	RASSF3	chr12	65004523	+	TBK1	chr12	64889263	+
Frame-shit	ENST00000360467	ENST00000280326		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000360467	ENST00000503026		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000360467	ENST00000515390		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000360467	ENST00000515676		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000360467	ENST00000506600		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000462309	ENST00000280326		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462309	ENST00000503026		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462309	ENST00000515390		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462309	ENST00000515676		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
intron-intron	ENST00000462309	ENST00000506600		TCGA	RV	READ	TCGA-DY-A1DD-01A	COL4A2	chr13	111165374	+	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000349945	ENST00000543948		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000349945	ENST00000219599		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000349945	ENST00000415987		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000349945	ENST00000396023		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-intron	ENST00000349945	ENST00000574787		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000432919	ENST00000543948		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000432919	ENST00000219599		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000432919	ENST00000415987		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000432919	ENST00000396023		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5CDS-intron	ENST00000432919	ENST00000574787		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000354436	ENST00000543948		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000354436	ENST00000219599		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000354436	ENST00000415987		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000354436	ENST00000396023		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5CDS-intron	ENST00000354436	ENST00000574787		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000567239	ENST00000543948		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000567239	ENST00000219599		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000567239	ENST00000415987		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
Frame-shit	ENST00000567239	ENST00000396023		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5CDS-intron	ENST00000567239	ENST00000574787		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000393742	ENST00000543948		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000393742	ENST00000219599		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000393742	ENST00000415987		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000393742	ENST00000396023		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-intron	ENST00000393742	ENST00000574787		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000566899	ENST00000543948		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000566899	ENST00000219599		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000566899	ENST00000415987		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-3CDS	ENST00000566899	ENST00000396023		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5UTR-intron	ENST00000566899	ENST00000574787		TCGA	RV	READ	TCGA-AH-6549-01A	NFAT5	chr16	69600277	+	CRYM	chr16	21281212	-
5CDS-3UTR	ENST00000247843	ENST00000435070		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000247843	ENST00000456847		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000247843	ENST00000266679		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000247843	ENST00000550987		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000247843	ENST00000551516		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000548020	ENST00000435070		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000548020	ENST00000456847		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-3UTR	ENST00000548020	ENST00000266679		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000548020	ENST00000550987		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
5CDS-intron	ENST00000548020	ENST00000551516		TCGA	RV	READ	TCGA-EI-6506-01A	YEATS4	chr12	69764755	+	CPSF6	chr12	69663292	+
In-frame	ENST00000360768	ENST00000419336		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000360768	ENST00000241069		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000360768	ENST00000428317		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000360768	ENST00000302913		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000360768	ENST00000412389		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000360768	ENST00000411582		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
5CDS-intron	ENST00000360768	ENST00000497647		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000434382	ENST00000419336		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000434382	ENST00000241069		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000434382	ENST00000428317		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000434382	ENST00000302913		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000434382	ENST00000412389		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
In-frame	ENST00000434382	ENST00000411582		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
5CDS-intron	ENST00000434382	ENST00000497647		TCGA	RV	READ	TCGA-CI-6621-01A	VKORC1L1	chr7	65338552	+	ACHE	chr7	100488959	-
5CDS-5UTR	ENST00000370069	ENST00000375114		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000370069	ENST00000246194		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000370069	ENST00000493399		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000266068	ENST00000375114		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000266068	ENST00000246194		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000266068	ENST00000493399		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000370077	ENST00000375114		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000370077	ENST00000246194		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000370077	ENST00000493399		TCGA	RV	READ	TCGA-DY-A1DD-01A	GMEB2	chr20	62234318	-	RALY	chr20	32659872	+
intron-3CDS	ENST00000304363	ENST00000373302		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
intron-3CDS	ENST00000304363	ENST00000373299		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
intron-intron	ENST00000304363	ENST00000481942		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
intron-3CDS	ENST00000401547	ENST00000373302		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
intron-3CDS	ENST00000401547	ENST00000373299		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
intron-intron	ENST00000401547	ENST00000481942		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-3CDS	ENST00000405515	ENST00000373302		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-3CDS	ENST00000405515	ENST00000373299		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-intron	ENST00000405515	ENST00000481942		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-3CDS	ENST00000402789	ENST00000373302		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-3CDS	ENST00000402789	ENST00000373299		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-intron	ENST00000402789	ENST00000481942		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-3CDS	ENST00000402185	ENST00000373302		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-3CDS	ENST00000402185	ENST00000373299		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
5UTR-intron	ENST00000402185	ENST00000481942		TCGA	RV	READ	TCGA-AG-3731-01A	SUV420H1	chr11	67980944	-	STXBP1	chr9	130413882	+
In-frame	ENST00000264659	ENST00000318008		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
In-frame	ENST00000264659	ENST00000433206		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
In-frame	ENST00000264659	ENST00000435347		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
In-frame	ENST00000578925	ENST00000318008		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
In-frame	ENST00000578925	ENST00000433206		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
In-frame	ENST00000578925	ENST00000435347		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000398579	ENST00000318008		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000398579	ENST00000433206		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000398579	ENST00000435347		TCGA	RV	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761937	-	LASP1	chr17	37070578	+
In-frame	ENST00000368226	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368226	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368227	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368227	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000532331	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000532331	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368213	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368213	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368210	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368210	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368215	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368215	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368207	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000368207	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000525459	ENST00000356698		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000525459	ENST00000368317		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	READ	TCGA-G5-6233-01A	PTPRK	chr6	128505577	-	RSPO3	chr6	127469793	+
In-frame	ENST00000316485	ENST00000178640		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000316485	ENST00000560591		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000316485	ENST00000395476		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000316485	ENST00000354498		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000316485	ENST00000340972		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
In-frame	ENST00000371158	ENST00000178640		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000371158	ENST00000560591		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000371158	ENST00000395476		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000371158	ENST00000354498		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000371158	ENST00000340972		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-3CDS	ENST00000543708	ENST00000178640		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000543708	ENST00000560591		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000543708	ENST00000395476		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000543708	ENST00000354498		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000543708	ENST00000340972		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-3CDS	ENST00000545929	ENST00000178640		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000545929	ENST00000560591		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000545929	ENST00000395476		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000545929	ENST00000354498		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000545929	ENST00000340972		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-3CDS	ENST00000472512	ENST00000178640		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000472512	ENST00000560591		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000472512	ENST00000395476		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000472512	ENST00000354498		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
intron-intron	ENST00000472512	ENST00000340972		TCGA	RV	READ	TCGA-DC-6683-01A	INADL	chr1	62274202	+	MAP2K5	chr15	68040569	+
Frame-shit	ENST00000368226	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368226	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368226	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368226	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368226	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000368227	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368227	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368227	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368227	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368227	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000532331	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000532331	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000532331	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000532331	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000532331	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000368213	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368213	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368213	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368213	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368213	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000368210	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368210	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368210	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368210	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368210	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000368215	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368215	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368215	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368215	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368215	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000368207	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368207	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368207	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368207	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000368207	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5UTR-3CDS	ENST00000524481	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5UTR-5UTR	ENST00000524481	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5UTR-5UTR	ENST00000524481	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5UTR-5UTR	ENST00000524481	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5UTR-5UTR	ENST00000524481	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
Frame-shit	ENST00000525459	ENST00000316649		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000525459	ENST00000367748		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000525459	ENST00000541547		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000525459	ENST00000468393		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
5CDS-5UTR	ENST00000525459	ENST00000367746		TCGA	RV	READ	TCGA-EI-7002-01A	PTPRK	chr6	128841404	-	IL20RA	chr6	137338240	-
In-frame	ENST00000359314	ENST00000265631		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
In-frame	ENST00000359314	ENST00000416240		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
In-frame	ENST00000359314	ENST00000542654		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
5CDS-intron	ENST00000359314	ENST00000494085		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
intron-3CDS	ENST00000486693	ENST00000265631		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
intron-3CDS	ENST00000486693	ENST00000416240		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
intron-3CDS	ENST00000486693	ENST00000542654		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
intron-intron	ENST00000486693	ENST00000494085		TCGA	RV	READ	TCGA-EI-6510-01A	CD2AP	chr6	47501491	+	SLC25A13	chr7	95800836	-
In-frame	ENST00000263857	ENST00000466387		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000263857	ENST00000496558		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000263857	ENST00000361291		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000263857	ENST00000402739		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000263857	ENST00000540488		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000263857	ENST00000541047		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000263857	ENST00000343114		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
5CDS-intron	ENST00000263857	ENST00000496251		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
5CDS-intron	ENST00000263857	ENST00000409266		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000466387		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000496558		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000361291		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000402739		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000540488		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000541047		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
In-frame	ENST00000409681	ENST00000343114		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
5CDS-intron	ENST00000409681	ENST00000496251		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
5CDS-intron	ENST00000409681	ENST00000409266		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000466387		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000496558		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000361291		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000402739		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000540488		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000541047		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-3CDS	ENST00000483538	ENST00000343114		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-intron	ENST00000483538	ENST00000496251		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
intron-intron	ENST00000483538	ENST00000409266		TCGA	RV	READ	TCGA-EF-5831-01A	POLR1A	chr2	86265823	-	CTNNA2	chr2	80831199	+
Frame-shit	ENST00000199764	ENST00000280326		TCGA	RV	READ	TCGA-AH-6549-01A	CEACAM6	chr19	42276113	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000199764	ENST00000503026		TCGA	RV	READ	TCGA-AH-6549-01A	CEACAM6	chr19	42276113	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000199764	ENST00000515390		TCGA	RV	READ	TCGA-AH-6549-01A	CEACAM6	chr19	42276113	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000199764	ENST00000515676		TCGA	RV	READ	TCGA-AH-6549-01A	CEACAM6	chr19	42276113	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000199764	ENST00000506600		TCGA	RV	READ	TCGA-AH-6549-01A	CEACAM6	chr19	42276113	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000348513	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000348513	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000348513	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000348513	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000348513	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000348513	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000544009	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000544009	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000544009	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000544009	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000544009	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000544009	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000431889	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000431889	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000431889	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000431889	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000431889	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000431889	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000580419	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000580419	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000580419	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000580419	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000580419	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000580419	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000377808	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000377808	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000377808	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000377808	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000377808	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000377808	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000400122	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000400122	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000400122	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000400122	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000400122	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000400122	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000578044	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000578044	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000578044	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000578044	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
Frame-shit	ENST00000578044	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
5CDS-3UTR	ENST00000578044	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
intron-3CDS	ENST00000474246	ENST00000254066		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
intron-3CDS	ENST00000474246	ENST00000394089		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
intron-3CDS	ENST00000474246	ENST00000425707		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
intron-3CDS	ENST00000474246	ENST00000394086		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
intron-3CDS	ENST00000474246	ENST00000394081		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
intron-3UTR	ENST00000474246	ENST00000420042		TCGA	RV	READ	TCGA-AH-6643-01A	SMARCE1	chr17	38792183	-	RARA	chr17	38511515	+
In-frame	ENST00000288840	ENST00000300030		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000288840	ENST00000558779		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000288840	ENST00000380290		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000288840	ENST00000557835		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000288840	ENST00000559950		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
In-frame	ENST00000457357	ENST00000300030		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000457357	ENST00000558779		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000457357	ENST00000380290		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000457357	ENST00000557835		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000457357	ENST00000559950		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
In-frame	ENST00000338426	ENST00000300030		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000338426	ENST00000558779		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000338426	ENST00000380290		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000338426	ENST00000557835		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
5CDS-intron	ENST00000338426	ENST00000559950		TCGA	RV	READ	TCGA-AG-3731-01A	SMAD6	chr15	67008836	+	FAM96A	chr15	64373350	-
intron-intron	ENST00000381395	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381395	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381395	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381406	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381406	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381406	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000416167	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000416167	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000416167	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000300632	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000300632	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000300632	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000434045	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000434045	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000434045	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381392	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381392	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381392	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381389	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381389	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381389	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000418738	ENST00000233057		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000418738	ENST00000395127		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000418738	ENST00000405334		TCGA	RV	READ	TCGA-AF-2687-01A	IGF2	chr11	2150351	-	EIF2AK2	chr2	37342384	-
intron-5UTR	ENST00000424834	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000424834	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-intron	ENST00000424834	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-3UTR	ENST00000424834	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000424834	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-5UTR	ENST00000382108	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-5UTR	ENST00000382108	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-intron	ENST00000382108	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-3UTR	ENST00000382108	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-5UTR	ENST00000382108	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-5UTR	ENST00000382095	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-5UTR	ENST00000382095	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-intron	ENST00000382095	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-3UTR	ENST00000382095	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
5UTR-5UTR	ENST00000382095	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000474317	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000474317	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-intron	ENST00000474317	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-3UTR	ENST00000474317	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000474317	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000399949	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000399949	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-intron	ENST00000399949	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-3UTR	ENST00000399949	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000399949	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000409126	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000409126	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-intron	ENST00000409126	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-3UTR	ENST00000409126	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000409126	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000343003	ENST00000248484		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000343003	ENST00000382263		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-intron	ENST00000343003	ENST00000403372		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-3UTR	ENST00000343003	ENST00000464735		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000343003	ENST00000382258		TCGA	RV	READ	TCGA-DC-4745-01A	SPATA13	chr13	24735071	+	TNFRSF19	chr13	24164289	+
intron-5UTR	ENST00000430069	ENST00000264657		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
intron-intron	ENST00000430069	ENST00000585517		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
intron-intron	ENST00000430069	ENST00000389272		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
intron-intron	ENST00000430069	ENST00000588969		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
intron-intron	ENST00000430069	ENST00000404395		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
intron-intron	ENST00000430069	ENST00000590776		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5UTR-5UTR	ENST00000457928	ENST00000264657		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000457928	ENST00000585517		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000457928	ENST00000389272		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000457928	ENST00000588969		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000457928	ENST00000404395		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5UTR-intron	ENST00000457928	ENST00000590776		TCGA	RV	READ	TCGA-AG-3731-01A	TBL1XR1	chr3	176914909	-	STAT3	chr17	40500557	-
5CDS-5UTR	ENST00000355091	ENST00000313269		TCGA	RV	READ	TCGA-AG-3731-01A	GPAA1	chr8	145139233	+	GRINA	chr8	145065368	+
5CDS-5UTR	ENST00000355091	ENST00000395068		TCGA	RV	READ	TCGA-AG-3731-01A	GPAA1	chr8	145139233	+	GRINA	chr8	145065368	+
5CDS-5UTR	ENST00000361036	ENST00000313269		TCGA	RV	READ	TCGA-AG-3731-01A	GPAA1	chr8	145139233	+	GRINA	chr8	145065368	+
5CDS-5UTR	ENST00000361036	ENST00000395068		TCGA	RV	READ	TCGA-AG-3731-01A	GPAA1	chr8	145139233	+	GRINA	chr8	145065368	+
3UTR-5UTR	ENST00000527144	ENST00000313269		TCGA	RV	READ	TCGA-AG-3731-01A	GPAA1	chr8	145139233	+	GRINA	chr8	145065368	+
3UTR-5UTR	ENST00000527144	ENST00000395068		TCGA	RV	READ	TCGA-AG-3731-01A	GPAA1	chr8	145139233	+	GRINA	chr8	145065368	+
5CDS-5UTR	ENST00000583610	ENST00000309156		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000309185		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000394211		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000583610	ENST00000578702		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000583610	ENST00000445327		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000394209		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000583610	ENST00000394204		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000309156		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000309185		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000394211		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394294	ENST00000578702		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394294	ENST00000445327		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000394209		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394294	ENST00000394204		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000309156		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000309185		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000394211		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000264658	ENST00000578702		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000264658	ENST00000445327		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000394209		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000264658	ENST00000394204		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000309156		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000309185		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000394211		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000577399	ENST00000578702		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000577399	ENST00000445327		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000394209		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000577399	ENST00000394204		TCGA	RV	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37557614	-	GRB7	chr17	37898505	+
Frame-shit	ENST00000470487	ENST00000262746		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
Frame-shit	ENST00000470487	ENST00000319248		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
Frame-shit	ENST00000470487	ENST00000372079		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
5CDS-intron	ENST00000470487	ENST00000483583		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
Frame-shit	ENST00000309027	ENST00000262746		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
Frame-shit	ENST00000309027	ENST00000319248		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
Frame-shit	ENST00000309027	ENST00000372079		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
5CDS-intron	ENST00000309027	ENST00000483583		TCGA	RV	READ	TCGA-EI-6885-01A	GOLIM4	chr3	167759180	-	PRDX1	chr1	45977086	-
Frame-shit	ENST00000258418	ENST00000373635		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000258418	ENST00000308696		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000258418	ENST00000409643		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
5CDS-intron	ENST00000258418	ENST00000488354		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000410084	ENST00000373635		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000410084	ENST00000308696		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000410084	ENST00000409643		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
5CDS-intron	ENST00000410084	ENST00000488354		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000409788	ENST00000373635		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000409788	ENST00000308696		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000409788	ENST00000409643		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
5CDS-intron	ENST00000409788	ENST00000488354		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
intron-3CDS	ENST00000484398	ENST00000373635		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
intron-3CDS	ENST00000484398	ENST00000308696		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
intron-3CDS	ENST00000484398	ENST00000409643		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
intron-intron	ENST00000484398	ENST00000488354		TCGA	LD	READ	TCGA-AF-2687-01A	CAB39	chr2	231624830	+	PSMD1	chr2	232003450	+
5UTR-3CDS	ENST00000261681	ENST00000281129		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-3CDS	ENST00000261681	ENST00000555265		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000261681	ENST00000216517		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000261681	ENST00000327841		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000261681	ENST00000553717		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-3CDS	ENST00000555925	ENST00000281129		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-3CDS	ENST00000555925	ENST00000555265		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000555925	ENST00000216517		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000555925	ENST00000327841		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000555925	ENST00000553717		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
intron-3CDS	ENST00000554911	ENST00000281129		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
intron-3CDS	ENST00000554911	ENST00000555265		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
intron-intron	ENST00000554911	ENST00000216517		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
intron-intron	ENST00000554911	ENST00000327841		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
intron-intron	ENST00000554911	ENST00000553717		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-3CDS	ENST00000556345	ENST00000281129		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-3CDS	ENST00000556345	ENST00000555265		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000556345	ENST00000216517		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000556345	ENST00000327841		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
5UTR-intron	ENST00000556345	ENST00000553717		TCGA	LD	READ	TCGA-AF-2690-01A	MPP5	chr14	67736500	+	CEP128	chr14	81046767	-
In-frame	ENST00000359947	ENST00000313250		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000359947	ENST00000558263		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000359947	ENST00000543741		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000359947	ENST00000382761		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000397073		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000308178		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000421831		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000397075		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000397074		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000559632		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000359947	ENST00000558581		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000438120	ENST00000313250		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000438120	ENST00000558263		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000438120	ENST00000543741		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000438120	ENST00000382761		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000397073		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000308178		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000421831		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000397075		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000397074		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000559632		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000438120	ENST00000558581		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372413	ENST00000313250		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372413	ENST00000558263		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372413	ENST00000543741		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372413	ENST00000382761		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000397073		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000308178		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000421831		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000397075		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000397074		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000559632		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372413	ENST00000558581		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372414	ENST00000313250		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372414	ENST00000558263		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372414	ENST00000543741		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000372414	ENST00000382761		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000397073		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000308178		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000421831		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000397075		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000397074		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000559632		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000372414	ENST00000558581		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000422171	ENST00000313250		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000422171	ENST00000558263		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000422171	ENST00000543741		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000422171	ENST00000382761		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000397073		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000308178		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000421831		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000397075		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000397074		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000559632		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
5CDS-intron	ENST00000422171	ENST00000558581		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-3CDS	ENST00000496447	ENST00000313250		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-3CDS	ENST00000496447	ENST00000558263		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-3CDS	ENST00000496447	ENST00000543741		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-3CDS	ENST00000496447	ENST00000382761		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000397073		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000308178		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000421831		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000397075		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000397074		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000559632		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
3UTR-intron	ENST00000496447	ENST00000558581		TCGA	LD	READ	TCGA-AF-2693-01A	PTPRF	chr1	44064584	+	DHRS4	chr14	24429111	+
In-frame	ENST00000281928	ENST00000229379		TCGA	LD	READ	TCGA-AF-4110-01A	MED13L	chr12	116675273	-	COX6A1	chr12	120876182	+
5UTR-3CDS	ENST00000551197	ENST00000229379		TCGA	LD	READ	TCGA-AF-4110-01A	MED13L	chr12	116675273	-	COX6A1	chr12	120876182	+
intron-3CDS	ENST00000258930	ENST00000258873		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000258930	ENST00000541759		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000258930	ENST00000560817		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000258930	ENST00000558828		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-3CDS	ENST00000539011	ENST00000258873		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000539011	ENST00000541759		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000539011	ENST00000560817		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000539011	ENST00000558828		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-3CDS	ENST00000557846	ENST00000258873		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000557846	ENST00000541759		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000557846	ENST00000560817		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000557846	ENST00000558828		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-3CDS	ENST00000560618	ENST00000258873		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000560618	ENST00000541759		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-intron	ENST00000560618	ENST00000560817		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
intron-5UTR	ENST00000560618	ENST00000558828		TCGA	LD	READ	TCGA-AF-5654-01A	CIB2	chr15	78412910	-	ACSBG1	chr15	78500444	-
Frame-shit	ENST00000315616	ENST00000570108		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
Frame-shit	ENST00000315616	ENST00000564258		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
Frame-shit	ENST00000315616	ENST00000355341		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
Frame-shit	ENST00000315616	ENST00000336455		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
5CDS-intron	ENST00000315616	ENST00000299173		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
5CDS-intron	ENST00000315616	ENST00000563530		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
intron-3CDS	ENST00000559271	ENST00000570108		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
intron-3CDS	ENST00000559271	ENST00000564258		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
intron-3CDS	ENST00000559271	ENST00000355341		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
intron-3CDS	ENST00000559271	ENST00000336455		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
intron-intron	ENST00000559271	ENST00000299173		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
intron-intron	ENST00000559271	ENST00000563530		TCGA	LD	READ	TCGA-AF-5654-01A	RPUSD2	chr15	40862142	+	ZFYVE19	chr15	41104897	+
Frame-shit	ENST00000331134	ENST00000331204		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
Frame-shit	ENST00000331134	ENST00000505490		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
5CDS-intron	ENST00000331134	ENST00000512673		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
Frame-shit	ENST00000374747	ENST00000331204		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
Frame-shit	ENST00000374747	ENST00000505490		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
5CDS-intron	ENST00000374747	ENST00000512673		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
5UTR-3CDS	ENST00000539314	ENST00000331204		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
5UTR-3CDS	ENST00000539314	ENST00000505490		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
5UTR-intron	ENST00000539314	ENST00000512673		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-3CDS	ENST00000572760	ENST00000331204		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-3CDS	ENST00000572760	ENST00000505490		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-intron	ENST00000572760	ENST00000512673		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-3CDS	ENST00000573876	ENST00000331204		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-3CDS	ENST00000573876	ENST00000505490		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-intron	ENST00000573876	ENST00000512673		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-3CDS	ENST00000574344	ENST00000331204		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-3CDS	ENST00000574344	ENST00000505490		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
intron-intron	ENST00000574344	ENST00000512673		TCGA	LD	READ	TCGA-AF-6655-01A	NPLOC4	chr17	79589192	-	ALYREF	chr17	79846021	-
5CDS-5UTR	ENST00000430627	ENST00000398472		TCGA	LD	READ	TCGA-AF-A56L-01A	CDK12	chr17	37682569	+	KRTAP4-1	chr17	39341573	-
5CDS-5UTR	ENST00000447079	ENST00000398472		TCGA	LD	READ	TCGA-AF-A56L-01A	CDK12	chr17	37682569	+	KRTAP4-1	chr17	39341573	-
intron-5UTR	ENST00000559545	ENST00000398472		TCGA	LD	READ	TCGA-AF-A56L-01A	CDK12	chr17	37682569	+	KRTAP4-1	chr17	39341573	-
5UTR-3CDS	ENST00000352393	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000352393	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000352393	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000352393	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000317677	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000317677	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000317677	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-intron	ENST00000317677	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000397445	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000397445	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000397445	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000397445	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000317619	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000317619	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000317619	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000317619	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000397443	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000397443	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000397443	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000397443	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000397446	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000397446	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000397446	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-intron	ENST00000397446	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000397442	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000397442	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000397442	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-intron	ENST00000397442	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000475146	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000475146	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-3CDS	ENST00000475146	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-intron	ENST00000475146	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	CPNE1	chr20	34252682	-	MROH8	chr20	35776312	-
intron-5UTR	ENST00000583610	ENST00000309156		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000309185		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000394211		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000583610	ENST00000578702		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000583610	ENST00000445327		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000394209		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000583610	ENST00000394204		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000309156		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000309185		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000394211		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000394294	ENST00000578702		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000394294	ENST00000445327		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000394209		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000394294	ENST00000394204		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000309156		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000309185		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000394211		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000264658	ENST00000578702		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-3UTR	ENST00000264658	ENST00000445327		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000394209		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
intron-5UTR	ENST00000264658	ENST00000394204		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000309156		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000309185		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000394211		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000577399	ENST00000578702		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000577399	ENST00000445327		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000394209		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000577399	ENST00000394204		TCGA	LD	READ	TCGA-AF-A56L-01A	FBXL20	chr17	37558426	-	GRB7	chr17	37898505	+
5CDS-intron	ENST00000309156	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000309156	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000309156	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000309185	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000309185	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000309185	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000394211	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000394211	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000394211	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
intron-intron	ENST00000578702	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
intron-intron	ENST00000578702	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
intron-intron	ENST00000578702	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000445327	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000445327	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000445327	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000394209	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000394209	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5CDS-intron	ENST00000394209	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000394204	ENST00000430627		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000394204	ENST00000447079		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
3UTR-intron	ENST00000394204	ENST00000559545		TCGA	LD	READ	TCGA-AF-A56L-01A	GRB7	chr17	37902455	+	CDK12	chr17	37700502	+
5UTR-3CDS	ENST00000374114	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000374114	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000374114	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000374114	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000359646	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000359646	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000359646	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000359646	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000374104	ENST00000441008		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000374104	ENST00000217333		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-3CDS	ENST00000374104	ENST00000400441		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
5UTR-intron	ENST00000374104	ENST00000466091		TCGA	LD	READ	TCGA-AF-A56L-01A	RBM12	chr20	34252682	-	MROH8	chr20	35776312	-
Frame-shit	ENST00000219334	ENST00000290949		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000219334	ENST00000540149		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000219334	ENST00000602876		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
5CDS-5UTR	ENST00000219334	ENST00000567694		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000568373	ENST00000290949		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000568373	ENST00000540149		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000568373	ENST00000602876		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
5CDS-5UTR	ENST00000568373	ENST00000567694		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000563226	ENST00000290949		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000563226	ENST00000540149		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
Frame-shit	ENST00000563226	ENST00000602876		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
5CDS-5UTR	ENST00000563226	ENST00000567694		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
intron-3CDS	ENST00000566009	ENST00000290949		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
intron-3CDS	ENST00000566009	ENST00000540149		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
intron-3CDS	ENST00000566009	ENST00000602876		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
intron-5UTR	ENST00000566009	ENST00000567694		TCGA	LD	READ	TCGA-AF-A56L-01A	SMPD3	chr16	68397399	-	ATP6V0D1	chr16	67473254	-
5UTR-3CDS	ENST00000254051	ENST00000583610		TCGA	LD	READ	TCGA-AF-A56L-01A	TNS4	chr17	38657786	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000254051	ENST00000394294		TCGA	LD	READ	TCGA-AF-A56L-01A	TNS4	chr17	38657786	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000254051	ENST00000264658		TCGA	LD	READ	TCGA-AF-A56L-01A	TNS4	chr17	38657786	-	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000254051	ENST00000577399		TCGA	LD	READ	TCGA-AF-A56L-01A	TNS4	chr17	38657786	-	FBXL20	chr17	37499494	-
Frame-shit	ENST00000423485	ENST00000346872		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000394189		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000439167		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000535189		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000377944		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000377945		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000377952		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000377958		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
In-frame	ENST00000423485	ENST00000346243		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
In-frame	ENST00000423485	ENST00000350532		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
In-frame	ENST00000423485	ENST00000351680		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
In-frame	ENST00000423485	ENST00000467757		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000439016		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
Frame-shit	ENST00000423485	ENST00000583368		TCGA	LD	READ	TCGA-AF-A56L-01A	TOP2A	chr17	38567361	-	IKZF3	chr17	37922746	-
3UTR-3CDS	ENST00000494757	ENST00000394303		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
3UTR-3CDS	ENST00000494757	ENST00000394310		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
3UTR-3CDS	ENST00000494757	ENST00000344140		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
3UTR-5UTR	ENST00000494757	ENST00000582877		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000323571	ENST00000394303		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000323571	ENST00000394310		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000323571	ENST00000344140		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-5UTR	ENST00000323571	ENST00000582877		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000585043	ENST00000394303		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000585043	ENST00000394310		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000585043	ENST00000344140		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-5UTR	ENST00000585043	ENST00000582877		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000394103	ENST00000394303		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000394103	ENST00000394310		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000394103	ENST00000344140		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-5UTR	ENST00000394103	ENST00000582877		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000536600	ENST00000394303		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000536600	ENST00000394310		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-3CDS	ENST00000536600	ENST00000344140		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
5UTR-5UTR	ENST00000536600	ENST00000582877		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
intron-3CDS	ENST00000583130	ENST00000394303		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
intron-3CDS	ENST00000583130	ENST00000394310		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
intron-3CDS	ENST00000583130	ENST00000344140		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
intron-5UTR	ENST00000583130	ENST00000582877		TCGA	LD	READ	TCGA-AF-A56L-01A	WIPF2	chr17	38375744	+	CACNB1	chr17	37343854	-
intron-5UTR	ENST00000341217	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000341217	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000341217	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000341217	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000341217	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581407	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581407	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581407	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581407	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581407	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582266	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582266	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582266	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582266	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582266	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
5UTR-5UTR	ENST00000452648	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
5UTR-5UTR	ENST00000452648	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
5UTR-5UTR	ENST00000452648	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
5UTR-5UTR	ENST00000452648	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
5UTR-5UTR	ENST00000452648	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582059	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582059	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582059	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582059	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000582059	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583953	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583953	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583953	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583953	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583953	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000577682	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000577682	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000577682	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000577682	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000577682	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583522	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583522	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583522	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583522	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000583522	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581381	ENST00000299341		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581381	ENST00000376352		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581381	ENST00000405898		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581381	ENST00000434978		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
intron-5UTR	ENST00000581381	ENST00000398391		TCGA	LD	READ	TCGA-AG-3731-01A	FAM222B	chr17	27139227	-	STXBP4	chr17	53076706	+
5CDS-3UTR	ENST00000254301	ENST00000395472		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-intron	ENST00000254301	ENST00000555846		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-intron	ENST00000254301	ENST00000553735		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-3UTR	ENST00000254301	ENST00000339298		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-3UTR	ENST00000553755	ENST00000395472		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-intron	ENST00000553755	ENST00000555846		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-intron	ENST00000553755	ENST00000553735		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-3UTR	ENST00000553755	ENST00000339298		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-3UTR	ENST00000554715	ENST00000395472		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-intron	ENST00000554715	ENST00000555846		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-intron	ENST00000554715	ENST00000553735		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
5CDS-3UTR	ENST00000554715	ENST00000339298		TCGA	LD	READ	TCGA-AG-3731-01A	LGALS3	chr14	55609467	+	SOCS4	chr14	55515514	+
3UTR-3CDS	ENST00000487096	ENST00000254853		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
3UTR-3CDS	ENST00000487096	ENST00000512825		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
3UTR-3CDS	ENST00000487096	ENST00000424747		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
Frame-shit	ENST00000360840	ENST00000254853		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
Frame-shit	ENST00000360840	ENST00000512825		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
Frame-shit	ENST00000360840	ENST00000424747		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
Frame-shit	ENST00000605337	ENST00000254853		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
Frame-shit	ENST00000605337	ENST00000512825		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
Frame-shit	ENST00000605337	ENST00000424747		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
intron-3CDS	ENST00000336230	ENST00000254853		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
intron-3CDS	ENST00000336230	ENST00000512825		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
intron-3CDS	ENST00000336230	ENST00000424747		TCGA	LD	READ	TCGA-AG-3731-01A	MRPL37	chr1	54671083	+	SLC52A1	chr17	4936464	-
5UTR-3CDS	ENST00000313367	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
5UTR-3CDS	ENST00000431825	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
5UTR-3CDS	ENST00000352860	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
5UTR-3CDS	ENST00000353930	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
intron-3CDS	ENST00000396431	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
intron-3CDS	ENST00000409069	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
intron-3CDS	ENST00000396429	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
intron-3CDS	ENST00000487020	ENST00000222674		TCGA	LD	READ	TCGA-AG-3731-01A	OSBPL3	chr7	25019505	-	NPVF	chr7	25267976	-
5UTR-3CDS	ENST00000360239	ENST00000299134		TCGA	LD	READ	TCGA-AG-3731-01A	SSH1	chr12	109246414	-	SVOP	chr12	109332731	-
Frame-shit	ENST00000326495	ENST00000299134		TCGA	LD	READ	TCGA-AG-3731-01A	SSH1	chr12	109246414	-	SVOP	chr12	109332731	-
Frame-shit	ENST00000551165	ENST00000299134		TCGA	LD	READ	TCGA-AG-3731-01A	SSH1	chr12	109246414	-	SVOP	chr12	109332731	-
intron-3CDS	ENST00000326470	ENST00000299134		TCGA	LD	READ	TCGA-AG-3731-01A	SSH1	chr12	109246414	-	SVOP	chr12	109332731	-
intron-3CDS	ENST00000546812	ENST00000299134		TCGA	LD	READ	TCGA-AG-3731-01A	SSH1	chr12	109246414	-	SVOP	chr12	109332731	-
Frame-shit	ENST00000337231	ENST00000425042		TCGA	LD	READ	TCGA-AG-3732-01A	CDR2L	chr17	72984217	+	HID1	chr17	72960727	-
5CDS-5UTR	ENST00000337231	ENST00000532900		TCGA	LD	READ	TCGA-AG-3732-01A	CDR2L	chr17	72984217	+	HID1	chr17	72960727	-
3UTR-3CDS	ENST00000408388	ENST00000423994		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000429770		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000435965		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000266039		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000395083		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000360963		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000424201		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-3CDS	ENST00000408388	ENST00000479441		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
3UTR-intron	ENST00000408388	ENST00000487413		TCGA	LD	READ	TCGA-AG-3732-01A	PVT1	chr8	128808254	+	CACNA2D2	chr3	50421768	-
intron-3CDS	ENST00000584522	ENST00000535342		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
intron-3CDS	ENST00000584522	ENST00000392769		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
intron-intron	ENST00000584522	ENST00000541355		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
intron-intron	ENST00000584522	ENST00000537949		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
intron-intron	ENST00000584522	ENST00000317442		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
intron-intron	ENST00000584522	ENST00000580482		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
Frame-shit	ENST00000301057	ENST00000535342		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
Frame-shit	ENST00000301057	ENST00000392769		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
5CDS-intron	ENST00000301057	ENST00000541355		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
5CDS-intron	ENST00000301057	ENST00000537949		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
5CDS-intron	ENST00000301057	ENST00000317442		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
5CDS-intron	ENST00000301057	ENST00000580482		TCGA	LD	READ	TCGA-AG-3732-01A	TP53I13	chr17	27899075	+	CEP112	chr17	64173138	-
5CDS-3UTR	ENST00000279036	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
5CDS-3UTR	ENST00000279035	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
5CDS-3UTR	ENST00000372689	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
intron-3UTR	ENST00000545755	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
intron-3UTR	ENST00000535404	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
intron-3UTR	ENST00000341555	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
5CDS-3UTR	ENST00000543458	ENST00000244020		TCGA	LD	READ	TCGA-AG-3742-01A	PIGT	chr20	44048035	+	SRSF6	chr20	42091984	+
intron-3CDS	ENST00000353139	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000353139	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000360679	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000360679	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
5UTR-3CDS	ENST00000394406	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
5UTR-3CDS	ENST00000394406	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000335166	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000335166	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000416895	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000416895	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000361253	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000361253	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000588142	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000588142	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000589665	ENST00000394287		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000589665	ENST00000300651		TCGA	LD	READ	TCGA-AG-3902-01A	ACACA	chr17	35715942	-	MED1	chr17	37588269	-
intron-3CDS	ENST00000474210	ENST00000258991		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000474210	ENST00000583097		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
intron-3CDS	ENST00000474210	ENST00000584379		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
intron-intron	ENST00000474210	ENST00000581812		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
In-frame	ENST00000394231	ENST00000258991		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
In-frame	ENST00000394231	ENST00000583097		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
In-frame	ENST00000394231	ENST00000584379		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
5CDS-intron	ENST00000394231	ENST00000581812		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
In-frame	ENST00000577810	ENST00000258991		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
In-frame	ENST00000577810	ENST00000583097		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
In-frame	ENST00000577810	ENST00000584379		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
5CDS-intron	ENST00000577810	ENST00000581812		TCGA	LD	READ	TCGA-AG-3902-01A	MIEN1	chr17	37886447	-	TEX2	chr17	62238293	-
5UTR-3CDS	ENST00000362042	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000362042	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000362042	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000362042	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000585291	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000585291	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000585291	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000585291	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000357480	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000357480	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000357480	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
5UTR-3CDS	ENST00000357480	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000361665	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000361665	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000361665	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000361665	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000579481	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000579481	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000579481	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000579481	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000582155	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000582155	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000582155	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000582155	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000583378	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000583378	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000583378	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000583378	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000536222	ENST00000583610		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000536222	ENST00000394294		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000536222	ENST00000264658		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
intron-3CDS	ENST00000536222	ENST00000577399		TCGA	LD	READ	TCGA-AG-3902-01A	NFE2L1	chr17	46125824	+	FBXL20	chr17	37499494	-
3UTR-intron	ENST00000398884	ENST00000229416		TCGA	LD	READ	TCGA-AG-4021-01A	TOMM6	chr6	41757074	+	GCLC	chr6	53429687	-
3UTR-intron	ENST00000398884	ENST00000514004		TCGA	LD	READ	TCGA-AG-4021-01A	TOMM6	chr6	41757074	+	GCLC	chr6	53429687	-
3UTR-intron	ENST00000398881	ENST00000229416		TCGA	LD	READ	TCGA-AG-4021-01A	TOMM6	chr6	41757074	+	GCLC	chr6	53429687	-
3UTR-intron	ENST00000398881	ENST00000514004		TCGA	LD	READ	TCGA-AG-4021-01A	TOMM6	chr6	41757074	+	GCLC	chr6	53429687	-
5CDS-intron	ENST00000373566	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373566	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373566	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373566	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373566	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373566	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373563	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373563	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373563	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373563	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373563	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000373563	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409480	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409480	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409480	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409480	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409480	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409480	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409547	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409547	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409547	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409547	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409547	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409547	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409196	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409196	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409196	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409196	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409196	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409196	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409451	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409451	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409451	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409451	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409451	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000409451	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
intron-intron	ENST00000482666	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
intron-intron	ENST00000482666	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
intron-intron	ENST00000482666	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
intron-intron	ENST00000482666	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
intron-intron	ENST00000482666	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
intron-intron	ENST00000482666	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000452341	ENST00000460742		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000452341	ENST00000259983		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000452341	ENST00000426700		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000452341	ENST00000467832		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000452341	ENST00000379586		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
5CDS-intron	ENST00000452341	ENST00000503680		TCGA	LD	READ	TCGA-AH-6544-01A	GIGYF2	chr2	233660931	+	C6orf52	chr6	10672869	-
Frame-shit	ENST00000372836	ENST00000493763		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
5CDS-3UTR	ENST00000372836	ENST00000397415		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
5CDS-3UTR	ENST00000372836	ENST00000304734		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
5CDS-3UTR	ENST00000372836	ENST00000424341		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
5CDS-3UTR	ENST00000372836	ENST00000602561		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
intron-3CDS	ENST00000394142	ENST00000493763		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
intron-3UTR	ENST00000394142	ENST00000397415		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
intron-3UTR	ENST00000394142	ENST00000304734		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
intron-3UTR	ENST00000394142	ENST00000424341		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
intron-3UTR	ENST00000394142	ENST00000602561		TCGA	LD	READ	TCGA-AH-6549-01A	CNPY3	chr6	42902336	+	RPL7L1	chr6	42851189	+
5CDS-5UTR	ENST00000400274	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000400274	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000400274	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000400274	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000400274	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000400274	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000427143	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000427143	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000427143	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000427143	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000427143	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000427143	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000318711	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000318711	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000318711	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000318711	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000318711	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000318711	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000417564	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000417564	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000417564	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000417564	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000417564	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000417564	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000457905	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000457905	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000457905	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000457905	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000457905	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000457905	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000466639	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000466639	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000466639	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000466639	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000466639	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000466639	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000435722	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000435722	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000435722	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000435722	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000435722	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
5CDS-5UTR	ENST00000435722	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000479654	ENST00000397701		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000479654	ENST00000397694		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000479654	ENST00000397692		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000479654	ENST00000329319		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000479654	ENST00000339195		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000479654	ENST00000397691		TCGA	LD	READ	TCGA-AH-6549-01A	DIP2A	chr21	47954600	+	YBEY	chr21	47706784	+
intron-5UTR	ENST00000546011	ENST00000415664		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000546011	ENST00000298232		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000546011	ENST00000342420		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000546011	ENST00000361285		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000209884	ENST00000415664		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000209884	ENST00000298232		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000209884	ENST00000342420		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
intron-5UTR	ENST00000209884	ENST00000361285		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
3UTR-5UTR	ENST00000493170	ENST00000415664		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
3UTR-5UTR	ENST00000493170	ENST00000298232		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
3UTR-5UTR	ENST00000493170	ENST00000342420		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
3UTR-5UTR	ENST00000493170	ENST00000361285		TCGA	LD	READ	TCGA-AH-6549-01A	KLHL20	chr1	173684793	+	TPTE	chr21	10910399	+
Frame-shit	ENST00000373625	ENST00000325874		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000373625	ENST00000581280		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000373625	ENST00000394744		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000537234	ENST00000325874		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000537234	ENST00000581280		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000537234	ENST00000394744		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000469790	ENST00000325874		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000469790	ENST00000581280		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000469790	ENST00000394744		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000545542	ENST00000325874		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000545542	ENST00000581280		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000545542	ENST00000394744		TCGA	LD	READ	TCGA-AH-6549-01A	KPNA6	chr1	32573735	+	RAB11FIP4	chr17	29844669	+
Frame-shit	ENST00000231061	ENST00000299767		TCGA	LD	READ	TCGA-AH-6549-01A	SPARC	chr5	151054173	-	HSP90B1	chr12	104341152	+
intron-3CDS	ENST00000537849	ENST00000299767		TCGA	LD	READ	TCGA-AH-6549-01A	SPARC	chr5	151054173	-	HSP90B1	chr12	104341152	+
5CDS-5UTR	ENST00000521022	ENST00000510238		TCGA	LD	READ	TCGA-AH-6644-01A	INTS9	chr8	28669844	-	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000416984	ENST00000510238		TCGA	LD	READ	TCGA-AH-6644-01A	INTS9	chr8	28669844	-	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000521777	ENST00000510238		TCGA	LD	READ	TCGA-AH-6644-01A	INTS9	chr8	28669844	-	CASC16	chr16	52624979	-
5CDS-5UTR	ENST00000397363	ENST00000510238		TCGA	LD	READ	TCGA-AH-6644-01A	INTS9	chr8	28669844	-	CASC16	chr16	52624979	-
intron-5UTR	ENST00000521070	ENST00000510238		TCGA	LD	READ	TCGA-AH-6644-01A	INTS9	chr8	28669844	-	CASC16	chr16	52624979	-
Frame-shit	ENST00000263980	ENST00000288774		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
Frame-shit	ENST00000263980	ENST00000447513		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
Frame-shit	ENST00000263980	ENST00000507596		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5CDS-intron	ENST00000263980	ENST00000515760		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
intron-3CDS	ENST00000490329	ENST00000288774		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
intron-3CDS	ENST00000490329	ENST00000447513		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
intron-3CDS	ENST00000490329	ENST00000507596		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
intron-intron	ENST00000490329	ENST00000515760		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5UTR-3CDS	ENST00000545949	ENST00000288774		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5UTR-3CDS	ENST00000545949	ENST00000447513		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5UTR-3CDS	ENST00000545949	ENST00000507596		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5UTR-intron	ENST00000545949	ENST00000515760		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
Frame-shit	ENST00000374086	ENST00000288774		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
Frame-shit	ENST00000374086	ENST00000447513		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
Frame-shit	ENST00000374086	ENST00000507596		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5CDS-intron	ENST00000374086	ENST00000515760		TCGA	LD	READ	TCGA-AH-6644-01A	SLC9A1	chr1	27480474	-	PEX10	chr1	2341890	-
5CDS-intron	ENST00000378623	ENST00000530157		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-intron	ENST00000378623	ENST00000525451		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-intron	ENST00000378623	ENST00000308162		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000378623	ENST00000527344		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000378623	ENST00000531407		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000378623	ENST00000524553		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000378623	ENST00000534769		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000378623	ENST00000531413		TCGA	LD	READ	TCGA-AH-6903-01A	LRP4	chr11	46939879	-	CFL1	chr11	65623713	-
5UTR-3CDS	ENST00000375441	ENST00000375370		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000375441	ENST00000538138		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-3UTR	ENST00000375441	ENST00000465174		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000375441	ENST00000544902		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-3CDS	ENST00000451881	ENST00000375370		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000451881	ENST00000538138		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-3UTR	ENST00000451881	ENST00000465174		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5UTR-5UTR	ENST00000451881	ENST00000544902		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
intron-3CDS	ENST00000326335	ENST00000375370		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000326335	ENST00000538138		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
intron-3UTR	ENST00000326335	ENST00000465174		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
intron-5UTR	ENST00000326335	ENST00000544902		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
In-frame	ENST00000375440	ENST00000375370		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375440	ENST00000538138		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5CDS-3UTR	ENST00000375440	ENST00000465174		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
5CDS-5UTR	ENST00000375440	ENST00000544902		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
3UTR-3CDS	ENST00000463426	ENST00000375370		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
3UTR-5UTR	ENST00000463426	ENST00000538138		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
3UTR-3UTR	ENST00000463426	ENST00000465174		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
3UTR-5UTR	ENST00000463426	ENST00000544902		TCGA	LD	READ	TCGA-CI-6619-01B	CUL4A	chr13	113864402	+	TFDP1	chr13	114265311	+
Frame-shit	ENST00000307569	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000307569	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000307569	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000307569	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000324432	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000324432	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000324432	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000324432	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
intron-3CDS	ENST00000446600	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
intron-3CDS	ENST00000446600	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
intron-3CDS	ENST00000446600	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
intron-3CDS	ENST00000446600	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000413936	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000413936	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000413936	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000413936	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000430490	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000430490	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000430490	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000430490	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
3UTR-3CDS	ENST00000472426	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
3UTR-3CDS	ENST00000472426	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
3UTR-3CDS	ENST00000472426	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
3UTR-3CDS	ENST00000472426	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000446820	ENST00000457580		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000446820	ENST00000388793		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000446820	ENST00000432932		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
Frame-shit	ENST00000446820	ENST00000347433		TCGA	LD	READ	TCGA-CI-6621-01A	DTX2	chr7	76110094	+	SRRT	chr7	100483868	+
In-frame	ENST00000421184	ENST00000263346		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000421184	ENST00000563406		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000421184	ENST00000263347		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
In-frame	ENST00000393092	ENST00000263346		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000393092	ENST00000563406		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000393092	ENST00000263347		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
In-frame	ENST00000261615	ENST00000263346		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000261615	ENST00000563406		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000261615	ENST00000263347		TCGA	LD	READ	TCGA-CI-6622-01A	DPEP1	chr16	89696922	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000405088	ENST00000354216		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000369892		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000358711		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000369908		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000405088	ENST00000492660		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000354216		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000369892		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000358711		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000369908		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000471899	ENST00000492660		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000354216		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000369892		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
Frame-shit	ENST00000297508	ENST00000358711		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000369908		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000297508	ENST00000492660		TCGA	LD	READ	TCGA-CI-6622-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000446256	ENST00000296438		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000446256	ENST00000415155		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000446256	ENST00000445170		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000446256	ENST00000436231		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000446256	ENST00000468158		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
Frame-shit	ENST00000445061	ENST00000296438		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5CDS-intron	ENST00000445061	ENST00000415155		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5CDS-intron	ENST00000445061	ENST00000445170		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5CDS-intron	ENST00000445061	ENST00000436231		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5CDS-intron	ENST00000445061	ENST00000468158		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
3UTR-3CDS	ENST00000476446	ENST00000296438		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
3UTR-intron	ENST00000476446	ENST00000415155		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
3UTR-intron	ENST00000476446	ENST00000445170		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
3UTR-intron	ENST00000476446	ENST00000436231		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
3UTR-intron	ENST00000476446	ENST00000468158		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-3CDS	ENST00000348968	ENST00000296438		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000348968	ENST00000415155		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000348968	ENST00000445170		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000348968	ENST00000436231		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
5UTR-intron	ENST00000348968	ENST00000468158		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
intron-3CDS	ENST00000457607	ENST00000296438		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
intron-intron	ENST00000457607	ENST00000415155		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
intron-intron	ENST00000457607	ENST00000445170		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
intron-intron	ENST00000457607	ENST00000436231		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
intron-intron	ENST00000457607	ENST00000468158		TCGA	LD	READ	TCGA-CL-4957-01A	DHX30	chr3	47852201	+	FBXW12	chr3	48419807	+
In-frame	ENST00000241436	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000241436	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000241436	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000352007	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000352007	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
intron-intron	ENST00000352007	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
3UTR-3CDS	ENST00000506928	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
3UTR-3CDS	ENST00000506928	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
3UTR-intron	ENST00000506928	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000515295	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000515295	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000515295	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000508526	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
intron-3CDS	ENST00000508526	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
intron-intron	ENST00000508526	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000504026	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000504026	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000504026	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000380481	ENST00000230640		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000380481	ENST00000545714		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
5CDS-intron	ENST00000380481	ENST00000504388		TCGA	LD	READ	TCGA-CL-5918-01A	POLK	chr5	74882883	+	SKIV2L2	chr5	54635838	+
In-frame	ENST00000346798	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000346798	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000354192	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000354192	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000348990	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000348990	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000357903	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000357903	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000358918	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000358918	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000359726	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000359726	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000448388	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000448388	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000440126	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000440126	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
In-frame	ENST00000439274	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000439274	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
intron-3CDS	ENST00000474136	ENST00000323084		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
intron-5UTR	ENST00000474136	ENST00000397916		TCGA	LD	READ	TCGA-DC-4745-01A	APP	chr21	27326904	-	TSPEAR	chr21	45987889	-
5CDS-5UTR	ENST00000378641	ENST00000381898		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378641	ENST00000333082		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378641	ENST00000246015		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378641	ENST00000335877		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378641	ENST00000438768		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-intron	ENST00000378641	ENST00000484891		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000338037	ENST00000381898		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000338037	ENST00000333082		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000338037	ENST00000246015		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000338037	ENST00000335877		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000338037	ENST00000438768		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-intron	ENST00000338037	ENST00000484891		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378637	ENST00000381898		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378637	ENST00000333082		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378637	ENST00000246015		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378637	ENST00000335877		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000378637	ENST00000438768		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-intron	ENST00000378637	ENST00000484891		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
intron-5UTR	ENST00000494924	ENST00000381898		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
intron-5UTR	ENST00000494924	ENST00000333082		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
intron-5UTR	ENST00000494924	ENST00000246015		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
intron-5UTR	ENST00000494924	ENST00000335877		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
intron-5UTR	ENST00000494924	ENST00000438768		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
intron-intron	ENST00000494924	ENST00000484891		TCGA	LD	READ	TCGA-DC-4749-01A	PLCB1	chr20	8131018	+	PSMF1	chr20	1106141	+
5CDS-5UTR	ENST00000246024	ENST00000372891		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000372894		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000372892		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000372889		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000372887		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000372882		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-3UTR	ENST00000246024	ENST00000477390		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000372886		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5CDS-5UTR	ENST00000246024	ENST00000349959		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372891		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372894		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372892		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372889		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372887		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372882		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-3UTR	ENST00000530935	ENST00000477390		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000372886		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
5UTR-5UTR	ENST00000530935	ENST00000349959		TCGA	LD	READ	TCGA-DC-4749-01A	TMX4	chr20	7990847	-	PKIG	chr20	43243175	+
In-frame	ENST00000332509	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000332509	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
In-frame	ENST00000335539	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000335539	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
In-frame	ENST00000402064	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000402064	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
intron-3CDS	ENST00000490473	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
intron-intron	ENST00000490473	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
In-frame	ENST00000436218	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000436218	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
Frame-shit	ENST00000447598	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000447598	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
Frame-shit	ENST00000435484	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000435484	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
Frame-shit	ENST00000417303	ENST00000381669		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
5CDS-intron	ENST00000417303	ENST00000332536		TCGA	LD	READ	TCGA-DC-5337-01A	PLA2G6	chr22	38565225	-	BAIAP2L2	chr22	38483271	-
In-frame	ENST00000262189	ENST00000600059		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
In-frame	ENST00000262189	ENST00000270238		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
In-frame	ENST00000355193	ENST00000600059		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
In-frame	ENST00000355193	ENST00000270238		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
intron-3CDS	ENST00000485655	ENST00000600059		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
intron-3CDS	ENST00000485655	ENST00000270238		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
intron-3CDS	ENST00000485241	ENST00000600059		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
intron-3CDS	ENST00000485241	ENST00000270238		TCGA	LD	READ	TCGA-DC-6154-01A	KMT2C	chr7	151845118	-	LMTK3	chr19	48997366	-
3UTR-3CDS	ENST00000313949	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000313949	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000313949	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371098	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371098	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371098	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000371075	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000371075	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000371075	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371100	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371100	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371100	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371099	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371099	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371099	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371102	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371102	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371102	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000464624	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000464624	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
3UTR-3CDS	ENST00000464624	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000306120	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000306120	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000306120	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371095	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371095	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371095	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371085	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371085	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000371085	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000354359	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000354359	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000354359	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000265620	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000265620	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000265620	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000306090	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000306090	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
Frame-shit	ENST00000306090	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371081	ENST00000311191		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371081	ENST00000389798		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
intron-3CDS	ENST00000371081	ENST00000389797		TCGA	LD	READ	TCGA-DC-6156-01A	GNAS	chr20	57480535	+	LRCH1	chr13	47255876	+
5CDS-3UTR	ENST00000294309	ENST00000429268		TCGA	LD	READ	TCGA-DT-5265-01A	TPCN2	chr11	68831435	+	SHANK2-AS2	chr11	70493446	+
5CDS-3UTR	ENST00000542467	ENST00000429268		TCGA	LD	READ	TCGA-DT-5265-01A	TPCN2	chr11	68831435	+	SHANK2-AS2	chr11	70493446	+
3UTR-3UTR	ENST00000442692	ENST00000429268		TCGA	LD	READ	TCGA-DT-5265-01A	TPCN2	chr11	68831435	+	SHANK2-AS2	chr11	70493446	+
In-frame	ENST00000265421	ENST00000307602		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000265421	ENST00000524839		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
5UTR-3CDS	ENST00000538005	ENST00000307602		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
5UTR-intron	ENST00000538005	ENST00000524839		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
intron-3CDS	ENST00000530566	ENST00000307602		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
intron-intron	ENST00000530566	ENST00000524839		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
intron-3CDS	ENST00000521492	ENST00000307602		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
intron-intron	ENST00000521492	ENST00000524839		TCGA	LD	READ	TCGA-DY-A0XA-01A	POLB	chr8	42202537	+	HOOK3	chr8	42761316	+
5UTR-3CDS	ENST00000358495	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000358495	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000358495	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-3CDS	ENST00000430095	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-intron	ENST00000430095	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-intron	ENST00000430095	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-3CDS	ENST00000539046	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000539046	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000539046	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-3CDS	ENST00000536177	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000536177	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000536177	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-3CDS	ENST00000544742	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000544742	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000544742	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-3CDS	ENST00000541619	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000541619	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
5UTR-intron	ENST00000541619	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-3CDS	ENST00000535376	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-intron	ENST00000535376	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-intron	ENST00000535376	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-3CDS	ENST00000545564	ENST00000399788		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-intron	ENST00000545564	ENST00000540838		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-intron	ENST00000545564	ENST00000382815		TCGA	LD	READ	TCGA-DY-A1DD-01A	RAD52	chr12	1058768	-	KDM5A	chr12	465703	-
intron-5UTR	ENST00000255608	ENST00000375114		TCGA	LD	READ	TCGA-DY-A1DE-01A	BTBD2	chr19	2013546	-	RALY	chr20	32659872	+
intron-5UTR	ENST00000255608	ENST00000246194		TCGA	LD	READ	TCGA-DY-A1DE-01A	BTBD2	chr19	2013546	-	RALY	chr20	32659872	+
intron-5UTR	ENST00000255608	ENST00000493399		TCGA	LD	READ	TCGA-DY-A1DE-01A	BTBD2	chr19	2013546	-	RALY	chr20	32659872	+
intron-5UTR	ENST00000590646	ENST00000375114		TCGA	LD	READ	TCGA-DY-A1DE-01A	BTBD2	chr19	2013546	-	RALY	chr20	32659872	+
intron-5UTR	ENST00000590646	ENST00000246194		TCGA	LD	READ	TCGA-DY-A1DE-01A	BTBD2	chr19	2013546	-	RALY	chr20	32659872	+
intron-5UTR	ENST00000590646	ENST00000493399		TCGA	LD	READ	TCGA-DY-A1DE-01A	BTBD2	chr19	2013546	-	RALY	chr20	32659872	+
In-frame	ENST00000261778	ENST00000449359		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
5CDS-intron	ENST00000261778	ENST00000564441		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
5CDS-intron	ENST00000261778	ENST00000441236		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
5CDS-intron	ENST00000261778	ENST00000348497		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
5CDS-intron	ENST00000261778	ENST00000339507		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
3UTR-3CDS	ENST00000561931	ENST00000449359		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
3UTR-intron	ENST00000561931	ENST00000564441		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
3UTR-intron	ENST00000561931	ENST00000441236		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
3UTR-intron	ENST00000561931	ENST00000348497		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
3UTR-intron	ENST00000561931	ENST00000339507		TCGA	LD	READ	TCGA-DY-A1DE-01A	TANGO6	chr16	69074324	+	PRMT7	chr16	68379578	+
5UTR-intron	ENST00000596053	ENST00000600324		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000596053	ENST00000594605		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000596053	ENST00000597593		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000596143	ENST00000600324		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000596143	ENST00000594605		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000596143	ENST00000597593		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000601416	ENST00000600324		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000601416	ENST00000594605		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000601416	ENST00000597593		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000291770	ENST00000600324		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000291770	ENST00000594605		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
5UTR-intron	ENST00000291770	ENST00000597593		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
3UTR-intron	ENST00000600535	ENST00000600324		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
3UTR-intron	ENST00000600535	ENST00000594605		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
3UTR-intron	ENST00000600535	ENST00000597593		TCGA	LD	READ	TCGA-DY-A1DF-01A	ZNF714	chr19	21266875	+	STAP2	chr19	4338941	-
Frame-shit	ENST00000276681	ENST00000558401		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
Frame-shit	ENST00000276681	ENST00000559916		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
Frame-shit	ENST00000276681	ENST00000544417		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
5CDS-intron	ENST00000276681	ENST00000559220		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
3UTR-3CDS	ENST00000521748	ENST00000558401		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
3UTR-3CDS	ENST00000521748	ENST00000559916		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
3UTR-3CDS	ENST00000521748	ENST00000544417		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
3UTR-intron	ENST00000521748	ENST00000559220		TCGA	LD	READ	TCGA-EF-5830-01A	MAL2	chr8	120220844	+	B2M	chr15	45007621	+
5CDS-5UTR	ENST00000377560	ENST00000450466		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000377560	ENST00000383233		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000377560	ENST00000542162		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000377560	ENST00000399707		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000377560	ENST00000475185		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5UTR-5UTR	ENST00000430131	ENST00000450466		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5UTR-5UTR	ENST00000430131	ENST00000383233		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5UTR-5UTR	ENST00000430131	ENST00000542162		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5UTR-intron	ENST00000430131	ENST00000399707		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5UTR-intron	ENST00000430131	ENST00000475185		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000550722	ENST00000450466		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000550722	ENST00000383233		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-5UTR	ENST00000550722	ENST00000542162		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000550722	ENST00000399707		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5CDS-intron	ENST00000550722	ENST00000475185		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
intron-5UTR	ENST00000549141	ENST00000450466		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
intron-5UTR	ENST00000549141	ENST00000383233		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
intron-5UTR	ENST00000549141	ENST00000542162		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
intron-intron	ENST00000549141	ENST00000399707		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
intron-intron	ENST00000549141	ENST00000475185		TCGA	LD	READ	TCGA-EF-5831-01A	HECTD4	chr12	112757029	-	TMEM241	chr18	21001408	-
5UTR-intron	ENST00000450466	ENST00000339486		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5UTR-intron	ENST00000450466	ENST00000581585		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5UTR-intron	ENST00000450466	ENST00000577501		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5CDS-intron	ENST00000383233	ENST00000339486		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5CDS-intron	ENST00000383233	ENST00000581585		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5CDS-intron	ENST00000383233	ENST00000577501		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5CDS-intron	ENST00000542162	ENST00000339486		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5CDS-intron	ENST00000542162	ENST00000581585		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
5CDS-intron	ENST00000542162	ENST00000577501		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
intron-intron	ENST00000399707	ENST00000339486		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
intron-intron	ENST00000399707	ENST00000581585		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
intron-intron	ENST00000399707	ENST00000577501		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
intron-intron	ENST00000475185	ENST00000339486		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
intron-intron	ENST00000475185	ENST00000581585		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
intron-intron	ENST00000475185	ENST00000577501		TCGA	LD	READ	TCGA-EF-5831-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21066072	+
In-frame	ENST00000367157	ENST00000367160		TCGA	LD	READ	TCGA-EI-6506-01A	NUAK2	chr1	205290526	-	DSTYK	chr1	205138960	-
In-frame	ENST00000367157	ENST00000367161		TCGA	LD	READ	TCGA-EI-6506-01A	NUAK2	chr1	205290526	-	DSTYK	chr1	205138960	-
In-frame	ENST00000367157	ENST00000367162		TCGA	LD	READ	TCGA-EI-6506-01A	NUAK2	chr1	205290526	-	DSTYK	chr1	205138960	-
intron-3CDS	ENST00000358337	ENST00000360839		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-3CDS	ENST00000358337	ENST00000297183		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000358337	ENST00000394723		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000358337	ENST00000394722		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000358337	ENST00000462121		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000358337	ENST00000544120		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-3CDS	ENST00000520764	ENST00000360839		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-3CDS	ENST00000520764	ENST00000297183		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000520764	ENST00000394723		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000520764	ENST00000394722		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000520764	ENST00000462121		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
intron-intron	ENST00000520764	ENST00000544120		TCGA	LD	READ	TCGA-EI-6506-01A	WDR55	chr5	140052531	+	ANKHD1	chr5	139884404	+
5UTR-3CDS	ENST00000357206	ENST00000313334		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-3CDS	ENST00000357206	ENST00000489308		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-5UTR	ENST00000357206	ENST00000472944		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-5UTR	ENST00000357206	ENST00000484036		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-3UTR	ENST00000357206	ENST00000533836		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-3CDS	ENST00000287727	ENST00000313334		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-3CDS	ENST00000287727	ENST00000489308		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-5UTR	ENST00000287727	ENST00000472944		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-5UTR	ENST00000287727	ENST00000484036		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
5UTR-3UTR	ENST00000287727	ENST00000533836		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-3CDS	ENST00000371591	ENST00000313334		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-3CDS	ENST00000371591	ENST00000489308		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-5UTR	ENST00000371591	ENST00000472944		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-5UTR	ENST00000371591	ENST00000484036		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-3UTR	ENST00000371591	ENST00000533836		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-3CDS	ENST00000469134	ENST00000313334		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-3CDS	ENST00000469134	ENST00000489308		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-5UTR	ENST00000469134	ENST00000472944		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-5UTR	ENST00000469134	ENST00000484036		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
intron-3UTR	ENST00000469134	ENST00000533836		TCGA	LD	READ	TCGA-EI-6506-01A	ZFYVE9	chr1	52608075	+	BTF3L4	chr1	52530497	+
Frame-shit	ENST00000410115	ENST00000280098		TCGA	LD	READ	TCGA-EI-6508-01A	HNMT	chr2	138727787	+	SPOPL	chr2	139316592	+
Frame-shit	ENST00000329366	ENST00000280098		TCGA	LD	READ	TCGA-EI-6508-01A	HNMT	chr2	138727787	+	SPOPL	chr2	139316592	+
Frame-shit	ENST00000280097	ENST00000280098		TCGA	LD	READ	TCGA-EI-6508-01A	HNMT	chr2	138727787	+	SPOPL	chr2	139316592	+
intron-3CDS	ENST00000280096	ENST00000280098		TCGA	LD	READ	TCGA-EI-6508-01A	HNMT	chr2	138727787	+	SPOPL	chr2	139316592	+
intron-3CDS	ENST00000485653	ENST00000280098		TCGA	LD	READ	TCGA-EI-6508-01A	HNMT	chr2	138727787	+	SPOPL	chr2	139316592	+
Frame-shit	ENST00000312513	ENST00000431231		TCGA	LD	READ	TCGA-EI-6509-01A	MRPL45	chr17	36455434	+	ARHGAP23	chr17	36614346	+
Frame-shit	ENST00000312513	ENST00000437668		TCGA	LD	READ	TCGA-EI-6509-01A	MRPL45	chr17	36455434	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000312513	ENST00000582409		TCGA	LD	READ	TCGA-EI-6509-01A	MRPL45	chr17	36455434	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000312513	ENST00000443378		TCGA	LD	READ	TCGA-EI-6509-01A	MRPL45	chr17	36455434	+	ARHGAP23	chr17	36614346	+
5CDS-intron	ENST00000331159	ENST00000474210		TCGA	LD	READ	TCGA-EI-6509-01A	SOCS7	chr17	36523933	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000331159	ENST00000394231		TCGA	LD	READ	TCGA-EI-6509-01A	SOCS7	chr17	36523933	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000331159	ENST00000577810		TCGA	LD	READ	TCGA-EI-6509-01A	SOCS7	chr17	36523933	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000577233	ENST00000474210		TCGA	LD	READ	TCGA-EI-6509-01A	SOCS7	chr17	36523933	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000577233	ENST00000394231		TCGA	LD	READ	TCGA-EI-6509-01A	SOCS7	chr17	36523933	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000577233	ENST00000577810		TCGA	LD	READ	TCGA-EI-6509-01A	SOCS7	chr17	36523933	+	MIEN1	chr17	37886544	-
intron-3CDS	ENST00000264659	ENST00000318008		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000264659	ENST00000433206		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000264659	ENST00000435347		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000578925	ENST00000318008		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000578925	ENST00000433206		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000578925	ENST00000435347		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000398579	ENST00000318008		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000398579	ENST00000433206		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
intron-3CDS	ENST00000398579	ENST00000435347		TCGA	LD	READ	TCGA-EI-6509-01A	SRCIN1	chr17	36761886	-	LASP1	chr17	37070578	+
In-frame	ENST00000245046	ENST00000418115		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
In-frame	ENST00000245046	ENST00000454011		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
In-frame	ENST00000245046	ENST00000422781		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
5CDS-intron	ENST00000245046	ENST00000265538		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
5UTR-3CDS	ENST00000497557	ENST00000418115		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
5UTR-3CDS	ENST00000497557	ENST00000454011		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
5UTR-3CDS	ENST00000497557	ENST00000422781		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
5UTR-intron	ENST00000497557	ENST00000265538		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
intron-3CDS	ENST00000429759	ENST00000418115		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
intron-3CDS	ENST00000429759	ENST00000454011		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
intron-3CDS	ENST00000429759	ENST00000422781		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
intron-intron	ENST00000429759	ENST00000265538		TCGA	LD	READ	TCGA-EI-6510-01A	EMC3	chr3	10012266	-	RHOA	chr3	49400059	-
In-frame	ENST00000418115	ENST00000245046		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
5CDS-5UTR	ENST00000418115	ENST00000497557		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
5CDS-intron	ENST00000418115	ENST00000429759		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
intron-3CDS	ENST00000454011	ENST00000245046		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
intron-5UTR	ENST00000454011	ENST00000497557		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
intron-intron	ENST00000454011	ENST00000429759		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
In-frame	ENST00000422781	ENST00000245046		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
5CDS-5UTR	ENST00000422781	ENST00000497557		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
5CDS-intron	ENST00000422781	ENST00000429759		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
intron-3CDS	ENST00000265538	ENST00000245046		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
intron-5UTR	ENST00000265538	ENST00000497557		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
intron-intron	ENST00000265538	ENST00000429759		TCGA	LD	READ	TCGA-EI-6510-01A	RHOA	chr3	49405861	-	EMC3	chr3	10011485	-
Frame-shit	ENST00000379651	ENST00000397821		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379651	ENST00000379716		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379651	ENST00000379698		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379651	ENST00000541422		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379651	ENST00000379697		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379651	ENST00000477102		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
Frame-shit	ENST00000379643	ENST00000397821		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379643	ENST00000379716		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379643	ENST00000379698		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379643	ENST00000541422		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379643	ENST00000379697		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000379643	ENST00000477102		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-3CDS	ENST00000543767	ENST00000397821		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000543767	ENST00000379716		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000543767	ENST00000379698		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000543767	ENST00000541422		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000543767	ENST00000379697		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000543767	ENST00000477102		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
Frame-shit	ENST00000443379	ENST00000397821		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000443379	ENST00000379716		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000443379	ENST00000379698		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000443379	ENST00000541422		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000443379	ENST00000379697		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
5CDS-intron	ENST00000443379	ENST00000477102		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-3CDS	ENST00000452324	ENST00000397821		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000452324	ENST00000379716		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000452324	ENST00000379698		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000452324	ENST00000541422		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000452324	ENST00000379697		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000452324	ENST00000477102		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-3CDS	ENST00000466145	ENST00000397821		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000466145	ENST00000379716		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000466145	ENST00000379698		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000466145	ENST00000541422		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000466145	ENST00000379697		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
intron-intron	ENST00000466145	ENST00000477102		TCGA	LD	READ	TCGA-EI-6511-01A	MAP7D2	chrX	20134868	-	SH3KBP1	chrX	19725102	-
In-frame	ENST00000308511	ENST00000308354		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000308511	ENST00000397760		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000308511	ENST00000339162		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000308511	ENST00000397761		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000308511	ENST00000409141		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000308511	ENST00000265810		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000308511	ENST00000409417		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5CDS-intron	ENST00000308511	ENST00000448520		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000308354		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000397760		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000339162		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000397761		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000409141		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000265810		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-3CDS	ENST00000521301	ENST00000409417		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
intron-intron	ENST00000521301	ENST00000448520		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000308354		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000397760		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000339162		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000397761		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000409141		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000265810		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
In-frame	ENST00000389279	ENST00000409417		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5CDS-intron	ENST00000389279	ENST00000448520		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000308354		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000397760		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000339162		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000397761		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000409141		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000265810		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000520861	ENST00000409417		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-intron	ENST00000520861	ENST00000448520		TCGA	LD	READ	TCGA-EI-6884-01A	CCAR2	chr8	22465578	+	PDLIM2	chr8	22442334	+
5UTR-3CDS	ENST00000543571	ENST00000340413		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3CDS	ENST00000543571	ENST00000460354		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3UTR	ENST00000543571	ENST00000367403		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3UTR	ENST00000543571	ENST00000367404		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-intron	ENST00000543571	ENST00000463048		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3CDS	ENST00000253339	ENST00000340413		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3CDS	ENST00000253339	ENST00000460354		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3UTR	ENST00000253339	ENST00000367403		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3UTR	ENST00000253339	ENST00000367404		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-intron	ENST00000253339	ENST00000463048		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3CDS	ENST00000542747	ENST00000340413		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3CDS	ENST00000542747	ENST00000460354		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3UTR	ENST00000542747	ENST00000367403		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-3UTR	ENST00000542747	ENST00000367404		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
intron-intron	ENST00000542747	ENST00000463048		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3CDS	ENST00000392273	ENST00000340413		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3CDS	ENST00000392273	ENST00000460354		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3UTR	ENST00000392273	ENST00000367403		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-3UTR	ENST00000392273	ENST00000367404		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
5UTR-intron	ENST00000392273	ENST00000463048		TCGA	LD	READ	TCGA-EI-6884-01A	LATS1	chr6	150038985	-	NUP43	chr6	150052871	-
In-frame	ENST00000520408	ENST00000317173		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000520408	ENST00000441698		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000520408	ENST00000518255		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000520408	ENST00000521209		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000520408	ENST00000528246		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000520408	ENST00000382490		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-intron	ENST00000520408	ENST00000517594		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000310430	ENST00000317173		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000310430	ENST00000441698		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000310430	ENST00000518255		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000310430	ENST00000521209		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000310430	ENST00000528246		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000310430	ENST00000382490		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-intron	ENST00000310430	ENST00000517594		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000518281	ENST00000317173		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000518281	ENST00000441698		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000518281	ENST00000518255		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000518281	ENST00000521209		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000518281	ENST00000528246		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-5UTR	ENST00000518281	ENST00000382490		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
5CDS-intron	ENST00000518281	ENST00000517594		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-3CDS	ENST00000522110	ENST00000317173		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-3CDS	ENST00000522110	ENST00000441698		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-3CDS	ENST00000522110	ENST00000518255		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-5UTR	ENST00000522110	ENST00000521209		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-5UTR	ENST00000522110	ENST00000528246		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-5UTR	ENST00000522110	ENST00000382490		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
intron-intron	ENST00000522110	ENST00000517594		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-3CDS	ENST00000518027	ENST00000317173		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-3CDS	ENST00000518027	ENST00000441698		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-3CDS	ENST00000518027	ENST00000518255		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-5UTR	ENST00000518027	ENST00000521209		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-5UTR	ENST00000518027	ENST00000528246		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-5UTR	ENST00000518027	ENST00000382490		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
3UTR-intron	ENST00000518027	ENST00000517594		TCGA	LD	READ	TCGA-EI-6885-01A	TNKS	chr8	9473187	+	MSRA	chr8	10065343	+
In-frame	ENST00000323060	ENST00000337273		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
In-frame	ENST00000323060	ENST00000454282		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-5UTR	ENST00000323060	ENST00000447967		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-5UTR	ENST00000323060	ENST00000523768		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-3UTR	ENST00000323060	ENST00000513944		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-5UTR	ENST00000323060	ENST00000506351		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
In-frame	ENST00000263275	ENST00000337273		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
In-frame	ENST00000263275	ENST00000454282		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-5UTR	ENST00000263275	ENST00000447967		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-5UTR	ENST00000263275	ENST00000523768		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-3UTR	ENST00000263275	ENST00000513944		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
5CDS-5UTR	ENST00000263275	ENST00000506351		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
intron-3CDS	ENST00000544371	ENST00000337273		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
intron-3CDS	ENST00000544371	ENST00000454282		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
intron-5UTR	ENST00000544371	ENST00000447967		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
intron-5UTR	ENST00000544371	ENST00000523768		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
intron-3UTR	ENST00000544371	ENST00000513944		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
intron-5UTR	ENST00000544371	ENST00000506351		TCGA	LD	READ	TCGA-EI-7002-01A	OPA3	chr19	46087881	-	TNPO1	chr5	72144212	+
In-frame	ENST00000216181	ENST00000263054		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000216181	ENST00000369698		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000216181	ENST00000344440		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
5CDS-intron	ENST00000216181	ENST00000478809		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-3CDS	ENST00000475726	ENST00000263054		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-intron	ENST00000475726	ENST00000369698		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-intron	ENST00000475726	ENST00000344440		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-intron	ENST00000475726	ENST00000478809		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-3CDS	ENST00000401701	ENST00000263054		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-intron	ENST00000401701	ENST00000369698		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-intron	ENST00000401701	ENST00000344440		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-intron	ENST00000401701	ENST00000478809		TCGA	LD	READ	TCGA-EI-7004-01A	MYH9	chr22	36701079	-	SORCS1	chr10	108489872	-
intron-3CDS	ENST00000370790	ENST00000354216		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000370790	ENST00000369892		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000370790	ENST00000358711		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000370790	ENST00000369908		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000370790	ENST00000492660		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000343004	ENST00000354216		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000343004	ENST00000369892		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000343004	ENST00000358711		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000343004	ENST00000369908		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000343004	ENST00000492660		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000298090	ENST00000354216		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000298090	ENST00000369892		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000298090	ENST00000358711		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000298090	ENST00000369908		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-intron	ENST00000298090	ENST00000492660		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000486347	ENST00000354216		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000486347	ENST00000369892		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000486347	ENST00000358711		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000486347	ENST00000369908		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000486347	ENST00000492660		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000493333	ENST00000354216		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000493333	ENST00000369892		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000493333	ENST00000358711		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-3CDS	ENST00000493333	ENST00000369908		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
5UTR-intron	ENST00000493333	ENST00000492660		TCGA	LD	READ	TCGA-F5-6465-01A	FAM122B	chrX	133931151	-	UCKL1	chr20	62572561	-
In-frame	ENST00000356286	ENST00000332826		TCGA	LD	READ	TCGA-F5-6465-01A	RBCK1	chr20	400375	+	ANO9	chr11	428826	-
In-frame	ENST00000353660	ENST00000332826		TCGA	LD	READ	TCGA-F5-6465-01A	RBCK1	chr20	400375	+	ANO9	chr11	428826	-
Frame-shit	ENST00000382181	ENST00000332826		TCGA	LD	READ	TCGA-F5-6465-01A	RBCK1	chr20	400375	+	ANO9	chr11	428826	-
intron-3CDS	ENST00000475269	ENST00000332826		TCGA	LD	READ	TCGA-F5-6465-01A	RBCK1	chr20	400375	+	ANO9	chr11	428826	-
intron-3CDS	ENST00000400245	ENST00000332826		TCGA	LD	READ	TCGA-F5-6465-01A	RBCK1	chr20	400375	+	ANO9	chr11	428826	-
intron-3CDS	ENST00000400247	ENST00000332826		TCGA	LD	READ	TCGA-F5-6465-01A	RBCK1	chr20	400375	+	ANO9	chr11	428826	-
5CDS-3UTR	ENST00000381527	ENST00000452222		TCGA	LD	READ	TCGA-F5-6571-01A	CDK8	chr13	26828906	+	USP12-AS2	chr13	27756971	+
5CDS-3UTR	ENST00000536792	ENST00000452222		TCGA	LD	READ	TCGA-F5-6571-01A	CDK8	chr13	26828906	+	USP12-AS2	chr13	27756971	+
intron-3UTR	ENST00000480323	ENST00000452222		TCGA	LD	READ	TCGA-F5-6571-01A	CDK8	chr13	26828906	+	USP12-AS2	chr13	27756971	+
5CDS-5UTR	ENST00000424834	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
5CDS-5UTR	ENST00000382108	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
5CDS-5UTR	ENST00000382095	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
intron-5UTR	ENST00000474317	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
intron-5UTR	ENST00000399949	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
intron-5UTR	ENST00000409126	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
intron-5UTR	ENST00000343003	ENST00000429698		TCGA	LD	READ	TCGA-F5-6571-01A	SPATA13	chr13	24826000	+	TPTE2P1	chr13	25525626	-
In-frame	ENST00000397683	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
In-frame	ENST00000397683	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
In-frame	ENST00000397683	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000291691	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000291691	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000291691	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397682	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397682	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397682	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397679	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397679	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397679	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397680	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397680	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
Frame-shit	ENST00000397680	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
5UTR-3CDS	ENST00000472607	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
5UTR-3CDS	ENST00000472607	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
5UTR-3CDS	ENST00000472607	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
intron-3CDS	ENST00000397685	ENST00000290219		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
intron-3CDS	ENST00000397685	ENST00000381995		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
intron-3CDS	ENST00000397685	ENST00000405436		TCGA	LD	READ	TCGA-F5-6810-01A	C21orf58	chr21	47731370	-	IFNGR2	chr21	34804484	+
5CDS-intron	ENST00000263388	ENST00000472876		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000395527		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000395529		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000261503		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000395530		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000536879		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000395522		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000395525		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
5CDS-intron	ENST00000263388	ENST00000584527		TCGA	LD	READ	TCGA-F5-6810-01A	NOTCH3	chr19	15297689	-	SPECC1	chr17	20107646	+
intron-3CDS	ENST00000498272	ENST00000401998		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
intron-3CDS	ENST00000498272	ENST00000361114		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
intron-3CDS	ENST00000498272	ENST00000398761		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
intron-3CDS	ENST00000498272	ENST00000418483		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
intron-3CDS	ENST00000498272	ENST00000398763		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
intron-intron	ENST00000498272	ENST00000604025		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000234827	ENST00000401998		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000234827	ENST00000361114		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000234827	ENST00000398761		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000234827	ENST00000418483		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000234827	ENST00000398763		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
5CDS-intron	ENST00000234827	ENST00000604025		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000371331	ENST00000401998		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000371331	ENST00000361114		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000371331	ENST00000398761		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000371331	ENST00000418483		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000371331	ENST00000398763		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
5CDS-intron	ENST00000371331	ENST00000604025		TCGA	LD	READ	TCGA-F5-6810-01A	TCEANC2	chr1	54534570	+	MICU1	chr10	74237014	-
In-frame	ENST00000389221	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
In-frame	ENST00000389221	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
In-frame	ENST00000508903	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
In-frame	ENST00000508903	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
In-frame	ENST00000397462	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
In-frame	ENST00000397462	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000391893	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000391893	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000403703	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000403703	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000248104	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000248104	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000397464	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000397464	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000402641	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000402641	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000301712	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000301712	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000503648	ENST00000215095		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
intron-3CDS	ENST00000503648	ENST00000565419		TCGA	LD	READ	TCGA-F5-6811-01A	UNKL	chr16	1440633	-	STX1B	chr16	31012924	-
Frame-shit	ENST00000354532	ENST00000598742		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000354532	ENST00000221975		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000354532	ENST00000593863		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
Frame-shit	ENST00000599846	ENST00000598742		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000599846	ENST00000221975		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000599846	ENST00000593863		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
intron-3CDS	ENST00000596957	ENST00000598742		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000596957	ENST00000221975		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
intron-5UTR	ENST00000596957	ENST00000593863		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
Frame-shit	ENST00000347545	ENST00000598742		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000347545	ENST00000221975		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000347545	ENST00000593863		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
Frame-shit	ENST00000378152	ENST00000598742		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000378152	ENST00000221975		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000378152	ENST00000593863		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
Frame-shit	ENST00000337665	ENST00000598742		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000337665	ENST00000221975		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-5UTR	ENST00000337665	ENST00000593863		TCGA	LD	READ	TCGA-F5-6814-01A	ARHGEF1	chr19	42397374	+	RPS19	chr19	42373101	+
5CDS-3UTR	ENST00000373625	ENST00000487305		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
5CDS-3UTR	ENST00000373625	ENST00000336294		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
5CDS-3UTR	ENST00000373625	ENST00000456834		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
5CDS-3UTR	ENST00000373625	ENST00000373634		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
5CDS-3UTR	ENST00000373625	ENST00000427288		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000537234	ENST00000487305		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000537234	ENST00000336294		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000537234	ENST00000456834		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000537234	ENST00000373634		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000537234	ENST00000427288		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000469790	ENST00000487305		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000469790	ENST00000336294		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000469790	ENST00000456834		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000469790	ENST00000373634		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000469790	ENST00000427288		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000545542	ENST00000487305		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000545542	ENST00000336294		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000545542	ENST00000456834		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000545542	ENST00000373634		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
intron-3UTR	ENST00000545542	ENST00000427288		TCGA	LD	READ	TCGA-F5-6814-01A	KPNA6	chr1	32573735	+	TMEM39B	chr1	32566043	+
In-frame	ENST00000522208	ENST00000337755		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
In-frame	ENST00000522208	ENST00000292591		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
5CDS-intron	ENST00000522208	ENST00000521305		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
In-frame	ENST00000521389	ENST00000337755		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
In-frame	ENST00000521389	ENST00000292591		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
5CDS-intron	ENST00000521389	ENST00000521305		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
In-frame	ENST00000261947	ENST00000337755		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
In-frame	ENST00000261947	ENST00000292591		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
5CDS-intron	ENST00000261947	ENST00000521305		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
intron-3CDS	ENST00000520564	ENST00000337755		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
intron-3CDS	ENST00000520564	ENST00000292591		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
intron-intron	ENST00000520564	ENST00000521305		TCGA	LD	READ	TCGA-F5-6814-01A	RNF130	chr5	179467453	-	MGAT4B	chr5	179226636	-
intron-3CDS	ENST00000421184	ENST00000263346		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000563406		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000263347		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000393092	ENST00000263346		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000563406		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000263347		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000261615	ENST00000263346		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000563406		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000263347		TCGA	LD	READ	TCGA-F5-6861-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000405088	ENST00000354216		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000369892		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000358711		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000405088	ENST00000369908		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000405088	ENST00000492660		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000354216		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000369892		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000358711		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-3CDS	ENST00000471899	ENST00000369908		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
intron-intron	ENST00000471899	ENST00000492660		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000354216		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000369892		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
Frame-shit	ENST00000297508	ENST00000358711		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
In-frame	ENST00000297508	ENST00000369908		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
5CDS-intron	ENST00000297508	ENST00000492660		TCGA	LD	READ	TCGA-F5-6861-01A	MICALL2	chr7	1486349	-	UCKL1	chr20	62572561	-
Frame-shit	ENST00000337179	ENST00000549982		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000337179	ENST00000361630		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000337179	ENST00000552217		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000337179	ENST00000393128		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000337179	ENST00000547098		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000337179	ENST00000548545		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000337179	ENST00000552938		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000415493	ENST00000549982		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000415493	ENST00000361630		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000415493	ENST00000552217		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000415493	ENST00000393128		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000415493	ENST00000547098		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000415493	ENST00000548545		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000415493	ENST00000552938		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000549992	ENST00000549982		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000549992	ENST00000361630		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000549992	ENST00000552217		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549992	ENST00000393128		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549992	ENST00000547098		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549992	ENST00000548545		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549992	ENST00000552938		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548662	ENST00000549982		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548662	ENST00000361630		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548662	ENST00000552217		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548662	ENST00000393128		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548662	ENST00000547098		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548662	ENST00000548545		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548662	ENST00000552938		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000547014	ENST00000549982		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000547014	ENST00000361630		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000547014	ENST00000552217		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000547014	ENST00000393128		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000547014	ENST00000547098		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000547014	ENST00000548545		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000547014	ENST00000552938		TCGA	LD	READ	TCGA-F5-6863-01A	NUDT4	chr12	93792631	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000502798	ENST00000511469		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000502798	ENST00000264218		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000502798	ENST00000505262		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000502798	ENST00000507338		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
5CDS-5UTR	ENST00000502798	ENST00000515325		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000322285	ENST00000511469		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000322285	ENST00000264218		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000322285	ENST00000505262		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
Frame-shit	ENST00000322285	ENST00000507338		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
5CDS-5UTR	ENST00000322285	ENST00000515325		TCGA	LD	READ	TCGA-F5-6863-01A	SV2C	chr5	75505712	+	NMU	chr4	56475346	-
5CDS-intron	ENST00000217402	ENST00000430275		TCGA	LD	READ	TCGA-F5-6864-01A	CHMP4B	chr20	32399464	+	FER1L4	chr20	34167036	-
Frame-shit	ENST00000337537	ENST00000355683		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
Frame-shit	ENST00000337537	ENST00000357479		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
5CDS-intron	ENST00000337537	ENST00000366206		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
Frame-shit	ENST00000555899	ENST00000355683		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
Frame-shit	ENST00000555899	ENST00000357479		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
5CDS-intron	ENST00000555899	ENST00000366206		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
intron-3CDS	ENST00000422769	ENST00000355683		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
intron-3CDS	ENST00000422769	ENST00000357479		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
intron-intron	ENST00000422769	ENST00000366206		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
5UTR-3CDS	ENST00000553266	ENST00000355683		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
5UTR-3CDS	ENST00000553266	ENST00000357479		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
5UTR-intron	ENST00000553266	ENST00000366206		TCGA	LD	READ	TCGA-F5-6864-01A	PPP2R5E	chr14	64006247	-	STRN3	chr14	31425448	-
In-frame	ENST00000377067	ENST00000296658		TCGA	LD	READ	TCGA-G5-6233-01A	GPC5	chr13	92797242	+	CMBL	chr5	10282400	-
5CDS-intron	ENST00000377067	ENST00000510532		TCGA	LD	READ	TCGA-G5-6233-01A	GPC5	chr13	92797242	+	CMBL	chr5	10282400	-
intron-3CDS	ENST00000483422	ENST00000296658		TCGA	LD	READ	TCGA-G5-6233-01A	GPC5	chr13	92797242	+	CMBL	chr5	10282400	-
intron-intron	ENST00000483422	ENST00000510532		TCGA	LD	READ	TCGA-G5-6233-01A	GPC5	chr13	92797242	+	CMBL	chr5	10282400	-
Frame-shit	ENST00000253247	ENST00000296658		TCGA	LD	READ	TCGA-G5-6233-01A	NOL11	chr17	65714204	+	CMBL	chr5	10282400	-
5CDS-intron	ENST00000253247	ENST00000510532		TCGA	LD	READ	TCGA-G5-6233-01A	NOL11	chr17	65714204	+	CMBL	chr5	10282400	-
3UTR-3CDS	ENST00000581966	ENST00000296658		TCGA	LD	READ	TCGA-G5-6233-01A	NOL11	chr17	65714204	+	CMBL	chr5	10282400	-
3UTR-intron	ENST00000581966	ENST00000510532		TCGA	LD	READ	TCGA-G5-6233-01A	NOL11	chr17	65714204	+	CMBL	chr5	10282400	-
5UTR-3CDS	ENST00000535137	ENST00000296658		TCGA	LD	READ	TCGA-G5-6233-01A	NOL11	chr17	65714204	+	CMBL	chr5	10282400	-
5UTR-intron	ENST00000535137	ENST00000510532		TCGA	LD	READ	TCGA-G5-6233-01A	NOL11	chr17	65714204	+	CMBL	chr5	10282400	-
intron-3CDS	ENST00000421184	ENST00000263346		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000563406		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000421184	ENST00000263347		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000393092	ENST00000263346		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000563406		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000393092	ENST00000263347		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-3CDS	ENST00000261615	ENST00000263346		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000563406		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
intron-intron	ENST00000261615	ENST00000263347		TCGA	LD	READ	TCGA-G5-6572-01A	DPEP1	chr16	89680127	+	TCF25	chr16	89976999	+
5CDS-intron	ENST00000538782	ENST00000597909		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000538782	ENST00000391781		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000538782	ENST00000600930		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000538782	ENST00000595635		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000597909		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000391781		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000600930		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000595635		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000597909		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000391781		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000600930		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000595635		TCGA	RV	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036100	+	ZNF320	chr19	53385236	-
5CDS-3UTR	ENST00000539909	ENST00000593699		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000539909	ENST00000372499		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000539909	ENST00000496424		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000286621	ENST00000593699		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000286621	ENST00000372499		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000286621	ENST00000496424		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372734	ENST00000593699		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000372734	ENST00000372499		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000372734	ENST00000496424		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000541550	ENST00000593699		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000541550	ENST00000372499		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
intron-intron	ENST00000541550	ENST00000496424		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000467840	ENST00000593699		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000467840	ENST00000372499		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
intron-intron	ENST00000467840	ENST00000496424		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ADK	chr10	75984349	+	C10orf11	chr10	77795766	+
In-frame	ENST00000269701	ENST00000269881		TCGA	RV	SARC	TCGA-3B-A9HP-01A	AKAP8	chr19	15487787	-	CALR3	chr19	16601381	-
5CDS-intron	ENST00000269701	ENST00000602234		TCGA	RV	SARC	TCGA-3B-A9HP-01A	AKAP8	chr19	15487787	-	CALR3	chr19	16601381	-
Frame-shit	ENST00000539907	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000539907	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000539907	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000539907	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000539907	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000539907	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000539907	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000539907	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000539907	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000539907	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000539907	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000540617	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000540617	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000540617	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000540617	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000540617	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000540617	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000540617	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000540617	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000540617	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000540617	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000540617	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374840	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374840	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374840	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374840	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374840	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374840	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374840	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374840	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374840	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374840	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374840	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-3CDS	ENST00000468526	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-3CDS	ENST00000468526	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-3CDS	ENST00000468526	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-3CDS	ENST00000468526	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-3CDS	ENST00000468526	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-3CDS	ENST00000468526	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-intron	ENST00000468526	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-intron	ENST00000468526	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-intron	ENST00000468526	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-intron	ENST00000468526	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
3UTR-intron	ENST00000468526	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374832	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374832	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374832	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374832	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374832	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000374832	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374832	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374832	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374832	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374832	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000374832	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000425315	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000425315	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000425315	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000425315	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000425315	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
Frame-shit	ENST00000425315	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000425315	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000425315	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000425315	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000425315	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
5CDS-intron	ENST00000425315	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374830	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374830	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374830	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374830	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374830	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374830	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374830	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374830	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374830	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374830	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374830	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374829	ENST00000264211		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374829	ENST00000400422		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374829	ENST00000602326		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374829	ENST00000374935		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374829	ENST00000374937		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000374829	ENST00000536266		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374829	ENST00000374933		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374829	ENST00000544689		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374829	ENST00000356916		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374829	ENST00000374927		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-intron	ENST00000374829	ENST00000537738		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ALPL	chr1	21889777	+	EIF4G3	chr1	21154191	-
intron-3CDS	ENST00000298834	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000426438	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000314845	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000533727	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000534300	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000458649	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
5UTR-3CDS	ENST00000528950	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000529963	ENST00000326737		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000266736	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A1L3-01A	AMDHD1	chr12	96346601	+	ACSS3	chr12	81568567	+
Frame-shit	ENST00000266736	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A1L3-01A	AMDHD1	chr12	96346601	+	ACSS3	chr12	81568567	+
Frame-shit	ENST00000266736	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A1L3-01A	AMDHD1	chr12	96346601	+	ACSS3	chr12	81568567	+
5CDS-5UTR	ENST00000284268	ENST00000409478		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000284268	ENST00000329971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000284268	ENST00000264160		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000284268	ENST00000410054		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
5CDS-5UTR	ENST00000284268	ENST00000409606		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
5CDS-intron	ENST00000284268	ENST00000443537		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000535119	ENST00000409478		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000535119	ENST00000329971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000535119	ENST00000264160		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000535119	ENST00000410054		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000535119	ENST00000409606		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-intron	ENST00000535119	ENST00000443537		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000503939	ENST00000409478		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000503939	ENST00000329971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000503939	ENST00000264160		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000503939	ENST00000410054		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-5UTR	ENST00000503939	ENST00000409606		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
intron-intron	ENST00000503939	ENST00000443537		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANKH	chr5	14871461	-	R3HDM1	chr2	136360070	+
Frame-shit	ENST00000378330	ENST00000454872		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
5CDS-3UTR	ENST00000378330	ENST00000473253		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
In-frame	ENST00000301030	ENST00000454872		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
5CDS-3UTR	ENST00000301030	ENST00000473253		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
intron-3CDS	ENST00000563291	ENST00000454872		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
intron-3UTR	ENST00000563291	ENST00000473253		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
intron-3CDS	ENST00000567736	ENST00000454872		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
intron-3UTR	ENST00000567736	ENST00000473253		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ANKRD11	chr16	89357033	-	NAALADL2	chr3	174951721	+
In-frame	ENST00000324559	ENST00000380525		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
In-frame	ENST00000324559	ENST00000397111		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
In-frame	ENST00000324559	ENST00000278224		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
5CDS-intron	ENST00000324559	ENST00000470221		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
5CDS-intron	ENST00000324559	ENST00000401769		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
5CDS-5UTR	ENST00000324559	ENST00000397114		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
intron-3CDS	ENST00000532043	ENST00000380525		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
intron-3CDS	ENST00000532043	ENST00000397111		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
intron-3CDS	ENST00000532043	ENST00000278224		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
intron-intron	ENST00000532043	ENST00000470221		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
intron-intron	ENST00000532043	ENST00000401769		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
intron-5UTR	ENST00000532043	ENST00000397114		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ANO5	chr11	22215078	+	CARS	chr11	3063486	-
Frame-shit	ENST00000299980	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
Frame-shit	ENST00000423132	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
In-frame	ENST00000433195	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
Frame-shit	ENST00000569748	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
Frame-shit	ENST00000393512	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
intron-3CDS	ENST00000570297	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
Frame-shit	ENST00000564155	ENST00000338779		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	AP1G1	chr16	71779047	-	MTSS1L	chr16	70698999	-
intron-3CDS	ENST00000520381	ENST00000507866		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-3UTR	ENST00000520381	ENST00000511199		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-5UTR	ENST00000520381	ENST00000329016		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
In-frame	ENST00000262215	ENST00000507866		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
5CDS-3UTR	ENST00000262215	ENST00000511199		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
5CDS-5UTR	ENST00000262215	ENST00000329016		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-3CDS	ENST00000517955	ENST00000507866		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-3UTR	ENST00000517955	ENST00000511199		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-5UTR	ENST00000517955	ENST00000329016		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-3CDS	ENST00000518230	ENST00000507866		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-3UTR	ENST00000518230	ENST00000511199		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
intron-5UTR	ENST00000518230	ENST00000329016		TCGA	RV	SARC	TCGA-DX-A48O-01A	ARFGEF1	chr8	68255399	-	SORCS2	chr4	7398015	+
In-frame	ENST00000371917	ENST00000316673		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
In-frame	ENST00000371917	ENST00000609795		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
In-frame	ENST00000371917	ENST00000457232		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
In-frame	ENST00000371917	ENST00000443598		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
In-frame	ENST00000371917	ENST00000316099		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
In-frame	ENST00000371917	ENST00000415691		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000493140	ENST00000316673		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000493140	ENST00000609795		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000493140	ENST00000457232		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000493140	ENST00000443598		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000493140	ENST00000316099		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
intron-3CDS	ENST00000493140	ENST00000415691		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARFGEF2	chr20	47538547	+	HNF4A	chr20	43034698	+
5CDS-intron	ENST00000261636	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000261636	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000261636	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000261636	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000261636	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000539055	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000539055	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000539055	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000539055	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000539055	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-intron	ENST00000536227	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-intron	ENST00000536227	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-intron	ENST00000536227	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-5UTR	ENST00000536227	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-5UTR	ENST00000536227	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000551688	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000551688	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000551688	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000551688	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000551688	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-intron	ENST00000551828	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-intron	ENST00000551828	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-intron	ENST00000551828	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-5UTR	ENST00000551828	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
intron-5UTR	ENST00000551828	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000551671	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000551671	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-intron	ENST00000551671	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000551671	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5CDS-5UTR	ENST00000551671	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000549302	ENST00000548946		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000549302	ENST00000318066		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-intron	ENST00000549302	ENST00000550657		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000549302	ENST00000549833		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-5UTR	ENST00000549302	ENST00000552442		TCGA	RV	SARC	TCGA-DX-A6BF-01A	ARL1	chr12	101801420	-	UBE2N	chr12	93805075	-
5UTR-3CDS	ENST00000502271	ENST00000282588		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
5UTR-intron	ENST00000502271	ENST00000504086		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
In-frame	ENST00000504924	ENST00000282588		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
5CDS-intron	ENST00000504924	ENST00000504086		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
5UTR-3CDS	ENST00000510591	ENST00000282588		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
5UTR-intron	ENST00000510591	ENST00000504086		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
In-frame	ENST00000507646	ENST00000282588		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
5CDS-intron	ENST00000507646	ENST00000504086		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ARL15	chr5	53409032	-	ITGA1	chr5	52243175	+
5CDS-intron	ENST00000368972	ENST00000539449		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
5CDS-intron	ENST00000368972	ENST00000369063		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
5CDS-intron	ENST00000368972	ENST00000498091		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
5CDS-intron	ENST00000392644	ENST00000539449		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
5CDS-intron	ENST00000392644	ENST00000369063		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
5CDS-intron	ENST00000392644	ENST00000498091		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
intron-intron	ENST00000481850	ENST00000539449		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
intron-intron	ENST00000481850	ENST00000369063		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
intron-intron	ENST00000481850	ENST00000498091		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ARMC2	chr6	109197553	+	RTN4IP1	chr6	107050797	-
Frame-shit	ENST00000369880	ENST00000277817		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
Frame-shit	ENST00000369880	ENST00000412272		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
Frame-shit	ENST00000369880	ENST00000395198		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
Frame-shit	ENST00000369880	ENST00000373700		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
5CDS-3UTR	ENST00000369880	ENST00000395187		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
5CDS-intron	ENST00000369880	ENST00000480158		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
5CDS-intron	ENST00000369880	ENST00000492996		TCGA	RV	SARC	TCGA-FX-A76Y-01A	AS3MT	chr10	104636792	+	HERC4	chr10	69716733	-
Frame-shit	ENST00000287394	ENST00000287387		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
Frame-shit	ENST00000287394	ENST00000523984		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5CDS-3UTR	ENST00000287394	ENST00000517609		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5CDS-3UTR	ENST00000287394	ENST00000523356		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5CDS-intron	ENST00000287394	ENST00000518125		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5UTR-3CDS	ENST00000521903	ENST00000287387		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5UTR-3CDS	ENST00000521903	ENST00000523984		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5UTR-3UTR	ENST00000521903	ENST00000517609		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5UTR-3UTR	ENST00000521903	ENST00000523356		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
5UTR-intron	ENST00000521903	ENST00000518125		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
intron-3CDS	ENST00000534257	ENST00000287387		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
intron-3CDS	ENST00000534257	ENST00000523984		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
intron-3UTR	ENST00000534257	ENST00000517609		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
intron-3UTR	ENST00000534257	ENST00000523356		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
intron-intron	ENST00000534257	ENST00000518125		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ATAD2	chr8	124384877	-	WDYHV1	chr8	124448693	+
Frame-shit	ENST00000321990	ENST00000395443		TCGA	RV	SARC	TCGA-DX-A6YS-01A	ATAD5	chr17	29205114	+	QRICH1	chr3	49095323	-
Frame-shit	ENST00000321990	ENST00000357496		TCGA	RV	SARC	TCGA-DX-A6YS-01A	ATAD5	chr17	29205114	+	QRICH1	chr3	49095323	-
Frame-shit	ENST00000321990	ENST00000424300		TCGA	RV	SARC	TCGA-DX-A6YS-01A	ATAD5	chr17	29205114	+	QRICH1	chr3	49095323	-
5CDS-intron	ENST00000321990	ENST00000479449		TCGA	RV	SARC	TCGA-DX-A6YS-01A	ATAD5	chr17	29205114	+	QRICH1	chr3	49095323	-
In-frame	ENST00000359933	ENST00000409874		TCGA	RV	SARC	TCGA-DX-A8BG-01A	ATG2B	chr14	96788877	-	TDRD9	chr14	104441726	+
In-frame	ENST00000359933	ENST00000339063		TCGA	RV	SARC	TCGA-DX-A8BG-01A	ATG2B	chr14	96788877	-	TDRD9	chr14	104441726	+
5CDS-intron	ENST00000359933	ENST00000554571		TCGA	RV	SARC	TCGA-DX-A8BG-01A	ATG2B	chr14	96788877	-	TDRD9	chr14	104441726	+
intron-3CDS	ENST00000261834	ENST00000409874		TCGA	RV	SARC	TCGA-DX-A8BG-01A	ATG2B	chr14	96788877	-	TDRD9	chr14	104441726	+
intron-3CDS	ENST00000261834	ENST00000339063		TCGA	RV	SARC	TCGA-DX-A8BG-01A	ATG2B	chr14	96788877	-	TDRD9	chr14	104441726	+
intron-intron	ENST00000261834	ENST00000554571		TCGA	RV	SARC	TCGA-DX-A8BG-01A	ATG2B	chr14	96788877	-	TDRD9	chr14	104441726	+
Frame-shit	ENST00000348959	ENST00000398016		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000348959	ENST00000359742		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000348959	ENST00000286445		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000348959	ENST00000542021		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000261173	ENST00000398016		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000261173	ENST00000359742		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000261173	ENST00000286445		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000261173	ENST00000542021		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000359142	ENST00000398016		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000359142	ENST00000359742		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000359142	ENST00000286445		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000359142	ENST00000542021		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000428670	ENST00000398016		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000428670	ENST00000359742		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000428670	ENST00000286445		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000428670	ENST00000542021		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000393164	ENST00000398016		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000393164	ENST00000359742		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000393164	ENST00000286445		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
5CDS-intron	ENST00000393164	ENST00000542021		TCGA	RV	SARC	TCGA-DX-AB2G-01A	ATP2B1	chr12	89996820	-	GRIP1	chr12	66935730	-
Frame-shit	ENST00000406775	ENST00000265362		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
Frame-shit	ENST00000406775	ENST00000436949		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
5CDS-intron	ENST00000406775	ENST00000471474		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
Frame-shit	ENST00000342771	ENST00000265362		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
Frame-shit	ENST00000342771	ENST00000436949		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
5CDS-intron	ENST00000342771	ENST00000471474		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
intron-3CDS	ENST00000403018	ENST00000265362		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
intron-3CDS	ENST00000403018	ENST00000436949		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
intron-intron	ENST00000403018	ENST00000471474		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
3UTR-3CDS	ENST00000489774	ENST00000265362		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
3UTR-3CDS	ENST00000489774	ENST00000436949		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
3UTR-intron	ENST00000489774	ENST00000471474		TCGA	RV	SARC	TCGA-DX-A1L1-01A	AUTS2	chr7	70163606	+	SEMA3A	chr7	83689874	-
Frame-shit	ENST00000370580	ENST00000370192		TCGA	RV	SARC	TCGA-DX-AATS-01A	BCL10	chr1	85741979	-	DPYD	chr1	98015300	-
5CDS-intron	ENST00000370580	ENST00000474241		TCGA	RV	SARC	TCGA-DX-AATS-01A	BCL10	chr1	85741979	-	DPYD	chr1	98015300	-
5CDS-intron	ENST00000370580	ENST00000423006		TCGA	RV	SARC	TCGA-DX-AATS-01A	BCL10	chr1	85741979	-	DPYD	chr1	98015300	-
5CDS-intron	ENST00000370580	ENST00000306031		TCGA	RV	SARC	TCGA-DX-AATS-01A	BCL10	chr1	85741979	-	DPYD	chr1	98015300	-
5UTR-3CDS	ENST00000282059	ENST00000602399		TCGA	RV	SARC	TCGA-DX-AB2T-01A	C18orf25	chr18	43754296	+	GABRR2	chr6	90009584	-
5UTR-3CDS	ENST00000282059	ENST00000402938		TCGA	RV	SARC	TCGA-DX-AB2T-01A	C18orf25	chr18	43754296	+	GABRR2	chr6	90009584	-
5UTR-5UTR	ENST00000282059	ENST00000602808		TCGA	RV	SARC	TCGA-DX-AB2T-01A	C18orf25	chr18	43754296	+	GABRR2	chr6	90009584	-
5UTR-3CDS	ENST00000321319	ENST00000602399		TCGA	RV	SARC	TCGA-DX-AB2T-01A	C18orf25	chr18	43754296	+	GABRR2	chr6	90009584	-
5UTR-3CDS	ENST00000321319	ENST00000402938		TCGA	RV	SARC	TCGA-DX-AB2T-01A	C18orf25	chr18	43754296	+	GABRR2	chr6	90009584	-
5UTR-5UTR	ENST00000321319	ENST00000602808		TCGA	RV	SARC	TCGA-DX-AB2T-01A	C18orf25	chr18	43754296	+	GABRR2	chr6	90009584	-
Frame-shit	ENST00000359676	ENST00000274217		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
5CDS-intron	ENST00000359676	ENST00000506258		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-3CDS	ENST00000475781	ENST00000274217		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-intron	ENST00000475781	ENST00000506258		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-3CDS	ENST00000326071	ENST00000274217		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-intron	ENST00000326071	ENST00000506258		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-3CDS	ENST00000375677	ENST00000274217		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-intron	ENST00000375677	ENST00000506258		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-3CDS	ENST00000375678	ENST00000274217		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-intron	ENST00000375678	ENST00000506258		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-3CDS	ENST00000201961	ENST00000274217		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
intron-intron	ENST00000201961	ENST00000506258		TCGA	RV	SARC	TCGA-UE-A6QU-01A	C20orf112	chr20	31040039	-	FAM105A	chr5	14610250	+
5CDS-5UTR	ENST00000430117	ENST00000416284		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000430117	ENST00000551619		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000430117	ENST00000550003		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000430117	ENST00000551449		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000430117	ENST00000549456		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000262059	ENST00000416284		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000262059	ENST00000551619		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000262059	ENST00000550003		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000262059	ENST00000551449		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000262059	ENST00000549456		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000548263	ENST00000416284		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000548263	ENST00000551619		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000548263	ENST00000550003		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000548263	ENST00000551449		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000548263	ENST00000549456		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000550804	ENST00000416284		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000550804	ENST00000551619		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000550804	ENST00000550003		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000550804	ENST00000551449		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000550804	ENST00000549456		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5UTR-5UTR	ENST00000547885	ENST00000416284		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5UTR-5UTR	ENST00000547885	ENST00000551619		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5UTR-intron	ENST00000547885	ENST00000550003		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5UTR-5UTR	ENST00000547885	ENST00000551449		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
5UTR-intron	ENST00000547885	ENST00000549456		TCGA	RV	SARC	TCGA-MB-A8JL-01A	CALCOCO1	chr12	54118871	-	FAM19A2	chr12	62261207	-
Frame-shit	ENST00000389532	ENST00000522695		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
Frame-shit	ENST00000389532	ENST00000524300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000523558		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000521210		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000355780		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000519961		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000521727		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000521451		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000522509		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000389532	ENST00000517542		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-intron	ENST00000389532	ENST00000524104		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-intron	ENST00000389532	ENST00000522962		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-intron	ENST00000389532	ENST00000521419		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-3CDS	ENST00000312405	ENST00000522695		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-3CDS	ENST00000312405	ENST00000524300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000523558		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000521210		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000355780		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000519961		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000521727		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000521451		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000522509		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000312405	ENST00000517542		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-intron	ENST00000312405	ENST00000524104		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-intron	ENST00000312405	ENST00000522962		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-intron	ENST00000312405	ENST00000521419		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-3CDS	ENST00000483991	ENST00000522695		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-3CDS	ENST00000483991	ENST00000524300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000523558		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000521210		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000355780		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000519961		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000521727		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000521451		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000522509		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-5UTR	ENST00000483991	ENST00000517542		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-intron	ENST00000483991	ENST00000524104		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-intron	ENST00000483991	ENST00000522962		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
intron-intron	ENST00000483991	ENST00000521419		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
Frame-shit	ENST00000409386	ENST00000522695		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
Frame-shit	ENST00000409386	ENST00000524300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000523558		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000521210		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000355780		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000519961		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000521727		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000521451		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000522509		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-5UTR	ENST00000409386	ENST00000517542		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-intron	ENST00000409386	ENST00000524104		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-intron	ENST00000409386	ENST00000522962		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
5CDS-intron	ENST00000409386	ENST00000521419		TCGA	RV	SARC	TCGA-3B-A9HL-01A	CAMSAP1	chr9	138798846	-	STAU2	chr8	74529686	-
Frame-shit	ENST00000380525	ENST00000240587		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000380525	ENST00000558569		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
Frame-shit	ENST00000397111	ENST00000240587		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000397111	ENST00000558569		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
Frame-shit	ENST00000278224	ENST00000240587		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5CDS-intron	ENST00000278224	ENST00000558569		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
intron-3CDS	ENST00000470221	ENST00000240587		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
intron-intron	ENST00000470221	ENST00000558569		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5UTR-3CDS	ENST00000401769	ENST00000240587		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5UTR-intron	ENST00000401769	ENST00000558569		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5UTR-3CDS	ENST00000397114	ENST00000240587		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
5UTR-intron	ENST00000397114	ENST00000558569		TCGA	RV	SARC	TCGA-DX-A3LT-01A	CARS	chr11	3078573	-	TSHZ3	chr19	31770658	-
Frame-shit	ENST00000356537	ENST00000283426		TCGA	RV	SARC	TCGA-JV-A5VE-01A	CCDC25	chr8	27630030	-	PLEKHG4B	chr5	143162	+
5UTR-3CDS	ENST00000539095	ENST00000283426		TCGA	RV	SARC	TCGA-JV-A5VE-01A	CCDC25	chr8	27630030	-	PLEKHG4B	chr5	143162	+
5UTR-3CDS	ENST00000522915	ENST00000283426		TCGA	RV	SARC	TCGA-JV-A5VE-01A	CCDC25	chr8	27630030	-	PLEKHG4B	chr5	143162	+
intron-3CDS	ENST00000273654	ENST00000265322		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180565295	-	PECR	chr2	216930200	-
intron-5UTR	ENST00000273654	ENST00000497889		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180565295	-	PECR	chr2	216930200	-
intron-3CDS	ENST00000442201	ENST00000265322		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180565295	-	PECR	chr2	216930200	-
intron-5UTR	ENST00000442201	ENST00000497889		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180565295	-	PECR	chr2	216930200	-
5UTR-3CDS	ENST00000485055	ENST00000265322		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180565295	-	PECR	chr2	216930200	-
5UTR-5UTR	ENST00000485055	ENST00000497889		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180565295	-	PECR	chr2	216930200	-
Frame-shit	ENST00000374877	ENST00000401604		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374877	ENST00000373985		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374877	ENST00000373980		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374877	ENST00000373975		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000397545	ENST00000401604		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000397545	ENST00000373985		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000397545	ENST00000373980		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000397545	ENST00000373975		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000269318	ENST00000401604		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000269318	ENST00000373985		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000269318	ENST00000373980		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000269318	ENST00000373975		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374876	ENST00000401604		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374876	ENST00000373985		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374876	ENST00000373980		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
Frame-shit	ENST00000374876	ENST00000373975		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
intron-3CDS	ENST00000573903	ENST00000401604		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
intron-3CDS	ENST00000573903	ENST00000373985		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
intron-3CDS	ENST00000573903	ENST00000373980		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
intron-3CDS	ENST00000573903	ENST00000373975		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	CCDC40	chr17	78011985	+	PRKG1	chr10	54048486	+
5UTR-3CDS	ENST00000392347	ENST00000585101		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-3CDS	ENST00000392347	ENST00000474627		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-intron	ENST00000392347	ENST00000469327		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-3CDS	ENST00000389641	ENST00000585101		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-3CDS	ENST00000389641	ENST00000474627		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-intron	ENST00000389641	ENST00000469327		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-3CDS	ENST00000392346	ENST00000585101		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-3CDS	ENST00000392346	ENST00000474627		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-intron	ENST00000392346	ENST00000469327		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-3CDS	ENST00000327026	ENST00000585101		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-3CDS	ENST00000327026	ENST00000474627		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-intron	ENST00000327026	ENST00000469327		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-3CDS	ENST00000392343	ENST00000585101		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-3CDS	ENST00000392343	ENST00000474627		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
5UTR-intron	ENST00000392343	ENST00000469327		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CCDC57	chr17	80170661	-	ATPAF2	chr17	17931973	-
intron-3CDS	ENST00000335185	ENST00000266771		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-5UTR	ENST00000335185	ENST00000545031		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-5UTR	ENST00000335185	ENST00000544112		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-intron	ENST00000335185	ENST00000539703		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-3CDS	ENST00000534415	ENST00000266771		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-5UTR	ENST00000534415	ENST00000545031		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-5UTR	ENST00000534415	ENST00000544112		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
intron-intron	ENST00000534415	ENST00000539703		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
5UTR-3CDS	ENST00000531481	ENST00000266771		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
5UTR-5UTR	ENST00000531481	ENST00000545031		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
5UTR-5UTR	ENST00000531481	ENST00000544112		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
5UTR-intron	ENST00000531481	ENST00000539703		TCGA	RV	SARC	TCGA-DX-A6YS-01A	CCDC73	chr11	32815895	-	SLC15A4	chr12	129283962	-
Frame-shit	ENST00000539107	ENST00000398178		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000539107	ENST00000334268		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000539107	ENST00000546248		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000539107	ENST00000542443		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000545336	ENST00000398178		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000545336	ENST00000334268		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000545336	ENST00000546248		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000545336	ENST00000542443		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000381256	ENST00000398178		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000381256	ENST00000334268		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000381256	ENST00000546248		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000381256	ENST00000542443		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000381259	ENST00000398178		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000381259	ENST00000334268		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000381259	ENST00000546248		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000381259	ENST00000542443		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
3UTR-3CDS	ENST00000540401	ENST00000398178		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
3UTR-3CDS	ENST00000540401	ENST00000334268		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
3UTR-intron	ENST00000540401	ENST00000546248		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
3UTR-intron	ENST00000540401	ENST00000542443		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000306172	ENST00000398178		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
Frame-shit	ENST00000306172	ENST00000334268		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000306172	ENST00000546248		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
5CDS-intron	ENST00000306172	ENST00000542443		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CCDC91	chr12	28515448	+	TRDN	chr6	123595815	-
intron-3CDS	ENST00000361115	ENST00000377801		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCL28	chr5	43397137	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000361115	ENST00000328457		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCL28	chr5	43397137	-	PLCXD3	chr5	41382636	-
5UTR-3CDS	ENST00000513525	ENST00000377801		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCL28	chr5	43397137	-	PLCXD3	chr5	41382636	-
5UTR-3CDS	ENST00000513525	ENST00000328457		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCL28	chr5	43397137	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000537013	ENST00000377801		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCL28	chr5	43397137	-	PLCXD3	chr5	41382636	-
intron-3CDS	ENST00000537013	ENST00000328457		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCL28	chr5	43397137	-	PLCXD3	chr5	41382636	-
5UTR-3CDS	ENST00000537343	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000537343	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000537343	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
In-frame	ENST00000295238	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
In-frame	ENST00000295238	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
In-frame	ENST00000295238	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
In-frame	ENST00000264157	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
In-frame	ENST00000264157	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
In-frame	ENST00000264157	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CCNT2	chr2	135677461	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000360469	ENST00000439435		TCGA	RV	SARC	TCGA-DX-AB2F-01A	CDH4	chr20	60470103	+	FGF16	chrX	76709648	+
Frame-shit	ENST00000543233	ENST00000439435		TCGA	RV	SARC	TCGA-DX-AB2F-01A	CDH4	chr20	60470103	+	FGF16	chrX	76709648	+
Frame-shit	ENST00000181839	ENST00000297323		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	CDK13	chr7	39991451	+	ADCY1	chr7	45649978	+
Frame-shit	ENST00000181839	ENST00000432715		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	CDK13	chr7	39991451	+	ADCY1	chr7	45649978	+
Frame-shit	ENST00000340829	ENST00000297323		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	CDK13	chr7	39991451	+	ADCY1	chr7	45649978	+
Frame-shit	ENST00000340829	ENST00000432715		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	CDK13	chr7	39991451	+	ADCY1	chr7	45649978	+
intron-3CDS	ENST00000484589	ENST00000297323		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	CDK13	chr7	39991451	+	ADCY1	chr7	45649978	+
intron-3CDS	ENST00000484589	ENST00000432715		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	CDK13	chr7	39991451	+	ADCY1	chr7	45649978	+
In-frame	ENST00000274695	ENST00000341776		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
In-frame	ENST00000274695	ENST00000397311		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
In-frame	ENST00000274695	ENST00000541660		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
5CDS-intron	ENST00000274695	ENST00000474854		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000378624	ENST00000341776		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000378624	ENST00000397311		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000378624	ENST00000541660		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-intron	ENST00000378624	ENST00000474854		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
In-frame	ENST00000378610	ENST00000341776		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
In-frame	ENST00000378610	ENST00000397311		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
In-frame	ENST00000378610	ENST00000541660		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
5CDS-intron	ENST00000378610	ENST00000474854		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000476517	ENST00000341776		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000476517	ENST00000397311		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000476517	ENST00000541660		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-intron	ENST00000476517	ENST00000474854		TCGA	RV	SARC	TCGA-DX-A48N-01A	CDKAL1	chr6	20548936	+	JARID2	chr6	15487538	+
intron-3CDS	ENST00000366542	ENST00000366639		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3UTR	ENST00000366542	ENST00000602825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3CDS	ENST00000366543	ENST00000366639		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3UTR	ENST00000366543	ENST00000602825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3CDS	ENST00000366544	ENST00000366639		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3UTR	ENST00000366544	ENST00000602825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3CDS	ENST00000468254	ENST00000366639		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3UTR	ENST00000468254	ENST00000602825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3CDS	ENST00000481987	ENST00000366639		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3UTR	ENST00000481987	ENST00000602825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3CDS	ENST00000490813	ENST00000366639		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3UTR	ENST00000490813	ENST00000602825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	CEP170	chr1	243418349	-	TSNAX	chr1	231672959	+
intron-3CDS	ENST00000316403	ENST00000608999		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000316403	ENST00000336894		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000316403	ENST00000480184		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000316403	ENST00000356764		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000316403	ENST00000290419		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000316403	ENST00000391959		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000316403	ENST00000367270		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000546343	ENST00000608999		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000546343	ENST00000336894		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000546343	ENST00000480184		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000546343	ENST00000356764		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000546343	ENST00000290419		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000546343	ENST00000391959		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000546343	ENST00000367270		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000560366	ENST00000608999		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000560366	ENST00000336894		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000560366	ENST00000480184		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000560366	ENST00000356764		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000560366	ENST00000290419		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000560366	ENST00000391959		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000560366	ENST00000367270		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000405140	ENST00000608999		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000405140	ENST00000336894		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-3CDS	ENST00000405140	ENST00000480184		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000405140	ENST00000356764		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000405140	ENST00000290419		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000405140	ENST00000391959		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
intron-intron	ENST00000405140	ENST00000367270		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
Frame-shit	ENST00000523500	ENST00000608999		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
Frame-shit	ENST00000523500	ENST00000336894		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
Frame-shit	ENST00000523500	ENST00000480184		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
5CDS-intron	ENST00000523500	ENST00000356764		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
5CDS-intron	ENST00000523500	ENST00000290419		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
5CDS-intron	ENST00000523500	ENST00000391959		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
5CDS-intron	ENST00000523500	ENST00000367270		TCGA	RV	SARC	TCGA-3B-A9HU-01A	CLU	chr8	27455514	-	PPP1R12B	chr1	202403784	+
3UTR-3CDS	ENST00000252456	ENST00000378300		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000252456	ENST00000378292		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000252456	ENST00000329305		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000252456	ENST00000360958		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-3CDS	ENST00000592923	ENST00000378300		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000592923	ENST00000378292		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000592923	ENST00000329305		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000592923	ENST00000360958		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-3CDS	ENST00000535659	ENST00000378300		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000535659	ENST00000378292		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000535659	ENST00000329305		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
3UTR-5UTR	ENST00000535659	ENST00000360958		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
intron-3CDS	ENST00000588468	ENST00000378300		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
intron-5UTR	ENST00000588468	ENST00000378292		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
intron-5UTR	ENST00000588468	ENST00000329305		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
intron-5UTR	ENST00000588468	ENST00000360958		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
Frame-shit	ENST00000544952	ENST00000378300		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
5CDS-5UTR	ENST00000544952	ENST00000378292		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
5CDS-5UTR	ENST00000544952	ENST00000329305		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
5CDS-5UTR	ENST00000544952	ENST00000360958		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CNN1	chr19	11660680	+	TPM2	chr9	35689900	-
intron-intron	ENST00000547702	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000547702	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000547702	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-3UTR	ENST00000547702	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000551295	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000551295	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000551295	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000551295	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000547849	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000547849	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000547849	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-3UTR	ENST00000547849	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000347616	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000347616	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000347616	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000347616	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000348761	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000348761	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-intron	ENST00000348761	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
5CDS-3UTR	ENST00000348761	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000550305	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000550305	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000550305	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-3UTR	ENST00000550305	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000360099	ENST00000551577		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000360099	ENST00000266534		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-intron	ENST00000360099	ENST00000536799		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
intron-3UTR	ENST00000360099	ENST00000546978		TCGA	RV	SARC	TCGA-QC-AA9N-01A	CNTN1	chr12	41423021	+	TMEM117	chr12	44770378	+
In-frame	ENST00000546373	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
In-frame	ENST00000546373	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
5CDS-intron	ENST00000546373	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
In-frame	ENST00000551568	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
In-frame	ENST00000551568	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
5CDS-intron	ENST00000551568	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
In-frame	ENST00000338356	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
In-frame	ENST00000338356	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
5CDS-intron	ENST00000338356	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
intron-3CDS	ENST00000549691	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
intron-3CDS	ENST00000549691	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
intron-intron	ENST00000549691	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	AVIL	chr12	58194995	-
In-frame	ENST00000430249	ENST00000357799		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
5CDS-intron	ENST00000430249	ENST00000409203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
5CDS-intron	ENST00000430249	ENST00000469840		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
In-frame	ENST00000233072	ENST00000357799		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
5CDS-intron	ENST00000233072	ENST00000409203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
5CDS-intron	ENST00000233072	ENST00000469840		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
In-frame	ENST00000451903	ENST00000357799		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
5CDS-intron	ENST00000451903	ENST00000409203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
5CDS-intron	ENST00000451903	ENST00000469840		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
intron-3CDS	ENST00000497121	ENST00000357799		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
intron-intron	ENST00000497121	ENST00000409203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
intron-intron	ENST00000497121	ENST00000469840		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CPS1	chr2	211515162	+	SGOL2	chr2	201448172	+
Frame-shit	ENST00000405694	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000405694	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368607	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368607	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000271889	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000271889	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368601	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368601	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368603	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368603	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368600	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
Frame-shit	ENST00000368600	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
3UTR-3CDS	ENST00000468845	ENST00000368115		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
3UTR-3CDS	ENST00000468845	ENST00000368114		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CREB3L4	chr1	153941931	+	FCER1A	chr1	159272644	+
In-frame	ENST00000262207	ENST00000325509		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
5CDS-5UTR	ENST00000262207	ENST00000518440		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
intron-3CDS	ENST00000519798	ENST00000325509		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
intron-5UTR	ENST00000519798	ENST00000518440		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
In-frame	ENST00000523524	ENST00000325509		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
5CDS-5UTR	ENST00000523524	ENST00000518440		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
In-frame	ENST00000517786	ENST00000325509		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
5CDS-5UTR	ENST00000517786	ENST00000518440		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CRISPLD1	chr8	75927147	+	MSC	chr8	72754982	-
In-frame	ENST00000308508	ENST00000318217		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CSPG4	chr15	76005009	-	MYO1D	chr17	31082680	-
In-frame	ENST00000308508	ENST00000394649		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CSPG4	chr15	76005009	-	MYO1D	chr17	31082680	-
In-frame	ENST00000308508	ENST00000579584		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CSPG4	chr15	76005009	-	MYO1D	chr17	31082680	-
5CDS-5UTR	ENST00000308508	ENST00000584232		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CSPG4	chr15	76005009	-	MYO1D	chr17	31082680	-
5CDS-intron	ENST00000308508	ENST00000583621		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CSPG4	chr15	76005009	-	MYO1D	chr17	31082680	-
5CDS-5UTR	ENST00000367306	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000367306	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000367306	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000367306	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000367306	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000367306	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000340006	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000340006	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-5UTR	ENST00000340006	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000340006	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000340006	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
5CDS-intron	ENST00000340006	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000531916	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000531916	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000531916	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000531916	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000531916	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000531916	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000532460	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000532460	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000532460	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000532460	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000532460	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000532460	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000533432	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000533432	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000533432	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000533432	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000533432	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000533432	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000526723	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000526723	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000526723	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000526723	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000526723	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000526723	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000458271	ENST00000335742		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000458271	ENST00000261509		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-5UTR	ENST00000458271	ENST00000505667		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000458271	ENST00000333488		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000458271	ENST00000512127		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
intron-intron	ENST00000458271	ENST00000507735		TCGA	RV	SARC	TCGA-DX-A48J-01A	CSRP1	chr1	201452662	-	PALLD	chr4	169418275	+
Frame-shit	ENST00000046640	ENST00000264833		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000046640	ENST00000590841		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
Frame-shit	ENST00000381870	ENST00000264833		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000381870	ENST00000590841		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
Frame-shit	ENST00000441220	ENST00000264833		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000441220	ENST00000590841		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000414524	ENST00000264833		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
intron-intron	ENST00000414524	ENST00000590841		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000488623	ENST00000264833		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
intron-intron	ENST00000488623	ENST00000590841		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
Frame-shit	ENST00000399306	ENST00000264833		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000399306	ENST00000590841		TCGA	RV	SARC	TCGA-DX-A8BK-01A	CTNS	chr17	3543561	+	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000540275	ENST00000396573		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000540275	ENST00000562109		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000540275	ENST00000535259		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000540275	ENST00000404927		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000540275	ENST00000330684		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000540275	ENST00000396575		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000540275	ENST00000566670		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000452085	ENST00000396573		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000452085	ENST00000562109		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000452085	ENST00000535259		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000452085	ENST00000404927		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000452085	ENST00000330684		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000452085	ENST00000396575		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000452085	ENST00000566670		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000537543	ENST00000396573		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000537543	ENST00000562109		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000537543	ENST00000535259		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000537543	ENST00000404927		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000537543	ENST00000330684		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000537543	ENST00000396575		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000537543	ENST00000566670		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-3CDS	ENST00000331677	ENST00000396573		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-3CDS	ENST00000331677	ENST00000562109		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000331677	ENST00000535259		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000331677	ENST00000404927		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000331677	ENST00000330684		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000331677	ENST00000396575		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000331677	ENST00000566670		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-3CDS	ENST00000359564	ENST00000396573		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-3CDS	ENST00000359564	ENST00000562109		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000359564	ENST00000535259		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000359564	ENST00000404927		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000359564	ENST00000330684		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000359564	ENST00000396575		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
5UTR-5UTR	ENST00000359564	ENST00000566670		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000606265	ENST00000396573		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-3CDS	ENST00000606265	ENST00000562109		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000606265	ENST00000535259		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000606265	ENST00000404927		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000606265	ENST00000330684		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000606265	ENST00000396575		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
intron-5UTR	ENST00000606265	ENST00000566670		TCGA	RV	SARC	TCGA-SI-A71O-01A	DSE	chr6	116692284	+	GRIN2A	chr16	10032408	-
In-frame	ENST00000228741	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ELK3	chr12	96617551	+	LIN7A	chr12	81242101	-
In-frame	ENST00000552142	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ELK3	chr12	96617551	+	LIN7A	chr12	81242101	-
intron-3CDS	ENST00000549529	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ELK3	chr12	96617551	+	LIN7A	chr12	81242101	-
5UTR-3CDS	ENST00000270530	ENST00000269919		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
5UTR-3CDS	ENST00000270530	ENST00000604499		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
5UTR-3CDS	ENST00000270530	ENST00000595066		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
5UTR-5UTR	ENST00000270530	ENST00000252813		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
5UTR-5UTR	ENST00000270530	ENST00000597431		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000538904	ENST00000269919		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000538904	ENST00000604499		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000538904	ENST00000595066		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000538904	ENST00000252813		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000538904	ENST00000597431		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000600802	ENST00000269919		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000600802	ENST00000604499		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000600802	ENST00000595066		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000600802	ENST00000252813		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000600802	ENST00000597431		TCGA	RV	SARC	TCGA-DX-A3LW-01A	EVI5L	chr19	7895267	+	PGPEP1	chr19	18466705	+
3UTR-5UTR	ENST00000512944	ENST00000392951		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
3UTR-intron	ENST00000512944	ENST00000530649		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
3UTR-intron	ENST00000512944	ENST00000532870		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
intron-5UTR	ENST00000510441	ENST00000392951		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
intron-intron	ENST00000510441	ENST00000530649		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
intron-intron	ENST00000510441	ENST00000532870		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
5CDS-5UTR	ENST00000315013	ENST00000392951		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
5CDS-intron	ENST00000315013	ENST00000530649		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
5CDS-intron	ENST00000315013	ENST00000532870		TCGA	RV	SARC	TCGA-FX-A3NJ-01A	EXOC3	chr5	467398	+	TAGLN	chr11	117070098	+
Frame-shit	ENST00000253861	ENST00000333538		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
5CDS-3UTR	ENST00000253861	ENST00000498380		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
Frame-shit	ENST00000539845	ENST00000333538		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
5CDS-3UTR	ENST00000539845	ENST00000498380		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
Frame-shit	ENST00000393161	ENST00000333538		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
5CDS-3UTR	ENST00000393161	ENST00000498380		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
intron-3CDS	ENST00000545148	ENST00000333538		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
intron-3UTR	ENST00000545148	ENST00000498380		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
intron-3CDS	ENST00000460346	ENST00000333538		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
intron-3UTR	ENST00000460346	ENST00000498380		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
intron-3CDS	ENST00000541309	ENST00000333538		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
intron-3UTR	ENST00000541309	ENST00000498380		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EXOC4	chr7	133002144	+	WBSCR17	chr7	71175746	+
5CDS-5UTR	ENST00000418814	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000418814	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000370479	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000370479	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000505769	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000505769	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000457062	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000457062	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000361499	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000361499	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000505868	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
5CDS-5UTR	ENST00000505868	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
intron-5UTR	ENST00000508844	ENST00000369244		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
intron-5UTR	ENST00000508844	ENST00000229971		TCGA	RV	SARC	TCGA-WK-A8XY-01A	FAM135A	chr6	71232289	+	FBXL4	chr6	99375698	-
intron-3CDS	ENST00000324331	ENST00000334256		TCGA	RV	SARC	TCGA-K1-A42X-02A	FARS2	chr6	5261893	+	KPNA4	chr3	160254628	-
intron-intron	ENST00000324331	ENST00000469804		TCGA	RV	SARC	TCGA-K1-A42X-02A	FARS2	chr6	5261893	+	KPNA4	chr3	160254628	-
5UTR-3CDS	ENST00000274680	ENST00000334256		TCGA	RV	SARC	TCGA-K1-A42X-02A	FARS2	chr6	5261893	+	KPNA4	chr3	160254628	-
5UTR-intron	ENST00000274680	ENST00000469804		TCGA	RV	SARC	TCGA-K1-A42X-02A	FARS2	chr6	5261893	+	KPNA4	chr3	160254628	-
Frame-shit	ENST00000504595	ENST00000412145		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000504595	ENST00000446349		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000504595	ENST00000374541		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000504595	ENST00000262539		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5CDS-intron	ENST00000504595	ENST00000394827		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5CDS-intron	ENST00000504595	ENST00000497739		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5UTR-3CDS	ENST00000510662	ENST00000412145		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5UTR-3CDS	ENST00000510662	ENST00000446349		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5UTR-3CDS	ENST00000510662	ENST00000374541		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5UTR-3CDS	ENST00000510662	ENST00000262539		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5UTR-intron	ENST00000510662	ENST00000394827		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5UTR-intron	ENST00000510662	ENST00000497739		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000329673	ENST00000412145		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000329673	ENST00000446349		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000329673	ENST00000374541		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000329673	ENST00000262539		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5CDS-intron	ENST00000329673	ENST00000394827		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
5CDS-intron	ENST00000329673	ENST00000497739		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15616181	+	PTPN3	chr9	112190964	-
Frame-shit	ENST00000335154	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000335154	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000550488	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000550488	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000352151	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000352151	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000293590	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
Frame-shit	ENST00000293590	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
intron-3CDS	ENST00000550668	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
intron-3CDS	ENST00000550668	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FMNL3	chr12	50050187	-	AGAP2	chr12	58129210	-
In-frame	ENST00000335255	ENST00000229304		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXK2	chr17	80521424	+	APOBEC1	chr12	7805431	-
intron-3CDS	ENST00000529652	ENST00000229304		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXK2	chr17	80521424	+	APOBEC1	chr12	7805431	-
5CDS-5UTR	ENST00000606080	ENST00000393240		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000606080	ENST00000261205		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000606080	ENST00000457153		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000606080	ENST00000552744		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000606080	ENST00000549454		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000538210	ENST00000393240		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000538210	ENST00000261205		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000538210	ENST00000457153		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000538210	ENST00000552744		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000538210	ENST00000549454		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	FRK	chr6	116288714	-	SYT1	chr12	79611283	+
intron-3CDS	ENST00000379284	ENST00000452339		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000430974		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000367895		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000355167		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000355286		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000531901		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000525849		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379284	ENST00000431403		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-intron	ENST00000379284	ENST00000441015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000452339		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000430974		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000367895		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000355167		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000355286		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000531901		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000525849		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000379287	ENST00000431403		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
5CDS-intron	ENST00000379287	ENST00000441015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000452339		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000430974		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000367895		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000355167		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000355286		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000531901		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000525849		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
In-frame	ENST00000603223	ENST00000431403		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
5CDS-intron	ENST00000603223	ENST00000441015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000452339		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000430974		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000367895		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000355167		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000355286		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000531901		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000525849		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-3CDS	ENST00000379278	ENST00000431403		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
intron-intron	ENST00000379278	ENST00000441015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GFOD1	chr6	13486870	-	EYA4	chr6	133703530	+
5UTR-3CDS	ENST00000370982	ENST00000367033		TCGA	RV	SARC	TCGA-VT-A80J-02A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
5UTR-intron	ENST00000370982	ENST00000483048		TCGA	RV	SARC	TCGA-VT-A80J-02A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
5UTR-3CDS	ENST00000494936	ENST00000367033		TCGA	RV	SARC	TCGA-VT-A80J-02A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
5UTR-intron	ENST00000494936	ENST00000483048		TCGA	RV	SARC	TCGA-VT-A80J-02A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
In-frame	ENST00000184956	ENST00000299341		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000376352		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000405898		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000434978		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000398391		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000299341		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000376352		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000405898		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000434978		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000398391		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
5UTR-3CDS	ENST00000585712	ENST00000299341		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
5UTR-3CDS	ENST00000585712	ENST00000376352		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
5UTR-3CDS	ENST00000585712	ENST00000405898		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
5UTR-3CDS	ENST00000585712	ENST00000434978		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
5UTR-3CDS	ENST00000585712	ENST00000398391		TCGA	RV	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58156057	-	STXBP4	chr17	53108529	+
Frame-shit	ENST00000271588	ENST00000254323		TCGA	RV	SARC	TCGA-FX-A2QS-01A	HMCN1	chr1	186052093	+	ZSWIM4	chr19	13910534	+
5CDS-intron	ENST00000271588	ENST00000440752		TCGA	RV	SARC	TCGA-FX-A2QS-01A	HMCN1	chr1	186052093	+	ZSWIM4	chr19	13910534	+
Frame-shit	ENST00000367492	ENST00000254323		TCGA	RV	SARC	TCGA-FX-A2QS-01A	HMCN1	chr1	186052093	+	ZSWIM4	chr19	13910534	+
5CDS-intron	ENST00000367492	ENST00000440752		TCGA	RV	SARC	TCGA-FX-A2QS-01A	HMCN1	chr1	186052093	+	ZSWIM4	chr19	13910534	+
intron-3CDS	ENST00000485744	ENST00000254323		TCGA	RV	SARC	TCGA-FX-A2QS-01A	HMCN1	chr1	186052093	+	ZSWIM4	chr19	13910534	+
intron-intron	ENST00000485744	ENST00000440752		TCGA	RV	SARC	TCGA-FX-A2QS-01A	HMCN1	chr1	186052093	+	ZSWIM4	chr19	13910534	+
5CDS-5UTR	ENST00000403681	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000403681	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000403681	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000403681	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000541363	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000541363	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000541363	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000541363	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393577	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393577	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393577	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393577	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393578	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393578	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393578	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000393578	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000425208	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000425208	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000425208	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000425208	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000536545	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000536545	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000536545	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000536545	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000354636	ENST00000486478		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000354636	ENST00000450089		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000354636	ENST00000371201		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
5CDS-5UTR	ENST00000354636	ENST00000395552		TCGA	RV	SARC	TCGA-DX-A6BE-01A	HMGA2	chr12	66232349	+	C1orf87	chr1	60463488	-
intron-3UTR	ENST00000539801	ENST00000530517		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000539801	ENST00000298282		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000539801	ENST00000542175		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
5UTR-3UTR	ENST00000381652	ENST00000530517		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
5UTR-5UTR	ENST00000381652	ENST00000298282		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
5UTR-5UTR	ENST00000381652	ENST00000542175		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-3UTR	ENST00000544510	ENST00000530517		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000544510	ENST00000298282		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000544510	ENST00000542175		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-3UTR	ENST00000487310	ENST00000530517		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000487310	ENST00000298282		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000487310	ENST00000542175		TCGA	RV	SARC	TCGA-DX-A23R-01A	JAK2	chr9	4986022	+	PKNOX2	chr11	125201715	+
intron-5UTR	ENST00000335647	ENST00000522455		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000335647	ENST00000521695		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000335647	ENST00000521268		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000335647	ENST00000518566		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000335647	ENST00000517638		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-intron	ENST00000335647	ENST00000523850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-intron	ENST00000335647	ENST00000521376		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000335643	ENST00000522455		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000335643	ENST00000521695		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000335643	ENST00000521268		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000335643	ENST00000518566		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000335643	ENST00000517638		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-intron	ENST00000335643	ENST00000523850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-intron	ENST00000335643	ENST00000521376		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000367411	ENST00000522455		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000367411	ENST00000521695		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000367411	ENST00000521268		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000367411	ENST00000518566		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-5UTR	ENST00000367411	ENST00000517638		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-intron	ENST00000367411	ENST00000523850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5UTR-intron	ENST00000367411	ENST00000521376		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000494504	ENST00000522455		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000494504	ENST00000521695		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000494504	ENST00000521268		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000494504	ENST00000518566		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-5UTR	ENST00000494504	ENST00000517638		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-intron	ENST00000494504	ENST00000523850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
intron-intron	ENST00000494504	ENST00000521376		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KATNA1	chr6	149969605	-	RALYL	chr8	85441534	+
5CDS-intron	ENST00000263468	ENST00000449833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000409161		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000423696		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000338508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000409530		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000449116		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000357171		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000263468	ENST00000468619		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000449833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000409161		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000423696		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000338508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000409530		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000449116		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000357171		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
intron-intron	ENST00000537689	ENST00000468619		TCGA	RV	SARC	TCGA-DX-A3M1-01A	KIAA1377	chr11	101818873	+	SHANK2	chr11	70935842	-
5CDS-5UTR	ENST00000197268	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000197268	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000197268	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000197268	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000197268	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000535974	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535974	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535974	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535974	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535974	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KIAA1467	chr12	13229077	+	TSPAN8	chr12	71676599	-
In-frame	ENST00000418530	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
In-frame	ENST00000418530	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
5CDS-intron	ENST00000418530	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
Frame-shit	ENST00000256707	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
Frame-shit	ENST00000256707	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
5CDS-intron	ENST00000256707	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
Frame-shit	ENST00000427284	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
Frame-shit	ENST00000427284	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
5CDS-intron	ENST00000427284	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
Frame-shit	ENST00000473731	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
Frame-shit	ENST00000473731	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
5CDS-intron	ENST00000473731	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
intron-3CDS	ENST00000319688	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
intron-3CDS	ENST00000319688	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
intron-intron	ENST00000319688	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
intron-3CDS	ENST00000436566	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
intron-3CDS	ENST00000436566	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
intron-intron	ENST00000436566	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	SOX7	chr8	10692285	-
In-frame	ENST00000260731	ENST00000299163		TCGA	RV	SARC	TCGA-JV-A75J-01A	KIF11	chr10	94376589	+	HIF1AN	chr10	102296168	+
5CDS-3UTR	ENST00000260731	ENST00000528044		TCGA	RV	SARC	TCGA-JV-A75J-01A	KIF11	chr10	94376589	+	HIF1AN	chr10	102296168	+
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	SARC	TCGA-X6-A7WC-01A	KIF26B	chr1	245583047	+	SMYD3	chr1	245927451	-
In-frame	ENST00000228740	ENST00000388887		TCGA	RV	SARC	TCGA-3B-A9HL-01A	LTA4H	chr12	96429139	-	STAB2	chr12	104076983	+
intron-3CDS	ENST00000552789	ENST00000388887		TCGA	RV	SARC	TCGA-3B-A9HL-01A	LTA4H	chr12	96429139	-	STAB2	chr12	104076983	+
intron-3CDS	ENST00000413268	ENST00000388887		TCGA	RV	SARC	TCGA-3B-A9HL-01A	LTA4H	chr12	96429139	-	STAB2	chr12	104076983	+
intron-3CDS	ENST00000548375	ENST00000388887		TCGA	RV	SARC	TCGA-3B-A9HL-01A	LTA4H	chr12	96429139	-	STAB2	chr12	104076983	+
5CDS-5UTR	ENST00000402746	ENST00000223129		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000402746	ENST00000406109		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000402746	ENST00000396682		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000402746	ENST00000401447		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-5UTR	ENST00000399654	ENST00000223129		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000399654	ENST00000406109		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000399654	ENST00000396682		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000399654	ENST00000401447		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-5UTR	ENST00000406869	ENST00000223129		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000406869	ENST00000406109		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000406869	ENST00000396682		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000406869	ENST00000401447		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-5UTR	ENST00000265854	ENST00000223129		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000265854	ENST00000406109		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000265854	ENST00000396682		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
5CDS-intron	ENST00000265854	ENST00000401447		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
intron-5UTR	ENST00000486340	ENST00000223129		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
intron-intron	ENST00000486340	ENST00000406109		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
intron-intron	ENST00000486340	ENST00000396682		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
intron-intron	ENST00000486340	ENST00000401447		TCGA	RV	SARC	TCGA-SI-AA8B-01A	MAD1L1	chr7	2054137	-	RPA3	chr7	7680806	-
In-frame	ENST00000261483	ENST00000298355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
In-frame	ENST00000261483	ENST00000338969		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
In-frame	ENST00000261483	ENST00000360392		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
5CDS-intron	ENST00000261483	ENST00000557456		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000505313	ENST00000298355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000505313	ENST00000338969		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000505313	ENST00000360392		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
intron-intron	ENST00000505313	ENST00000557456		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAN2A1	chr5	109026253	+	TRIM9	chr14	51492078	-
intron-3CDS	ENST00000229795	ENST00000462484		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
intron-5UTR	ENST00000229795	ENST00000334856		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
intron-5UTR	ENST00000229795	ENST00000460843		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
intron-intron	ENST00000229795	ENST00000371394		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
In-frame	ENST00000229794	ENST00000462484		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000229794	ENST00000334856		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000229794	ENST00000460843		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-intron	ENST00000229794	ENST00000371394		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
In-frame	ENST00000468133	ENST00000462484		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000468133	ENST00000334856		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000468133	ENST00000460843		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-intron	ENST00000468133	ENST00000371394		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
In-frame	ENST00000310795	ENST00000462484		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000310795	ENST00000334856		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000310795	ENST00000460843		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-intron	ENST00000310795	ENST00000371394		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MAPK14	chr6	36063843	+	EHMT1	chr9	140605419	+
5CDS-5UTR	ENST00000281928	ENST00000261211		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
5CDS-5UTR	ENST00000281928	ENST00000543119		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
5CDS-intron	ENST00000281928	ENST00000542666		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
5CDS-intron	ENST00000281928	ENST00000553042		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
intron-5UTR	ENST00000551197	ENST00000261211		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
intron-5UTR	ENST00000551197	ENST00000543119		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
intron-intron	ENST00000551197	ENST00000542666		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
intron-intron	ENST00000551197	ENST00000553042		TCGA	RV	SARC	TCGA-DX-A23V-01A	MED13L	chr12	116418555	-	CDK17	chr12	96728643	-
5UTR-3CDS	ENST00000549405	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
5UTR-3CDS	ENST00000549405	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
5UTR-3UTR	ENST00000549405	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000393205	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000393205	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000393205	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000332156	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000332156	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000332156	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000604798	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000604798	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000604798	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000552808	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000552808	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000552808	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000548651	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000548651	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000548651	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000552435	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3CDS	ENST00000552435	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
intron-3UTR	ENST00000552435	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
5UTR-3CDS	ENST00000602941	ENST00000320442		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
5UTR-3CDS	ENST00000602941	ENST00000379218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
5UTR-3UTR	ENST00000602941	ENST00000490243		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	SLC26A10	chr12	58018649	+
5CDS-5UTR	ENST00000215957	ENST00000216068		TCGA	RV	SARC	TCGA-DX-AB32-01A	MICALL1	chr22	38320724	+	DNAL4	chr22	39178875	-
5CDS-intron	ENST00000215957	ENST00000486019		TCGA	RV	SARC	TCGA-DX-AB32-01A	MICALL1	chr22	38320724	+	DNAL4	chr22	39178875	-
5CDS-5UTR	ENST00000215957	ENST00000406199		TCGA	RV	SARC	TCGA-DX-AB32-01A	MICALL1	chr22	38320724	+	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000402631	ENST00000216068		TCGA	RV	SARC	TCGA-DX-AB32-01A	MICALL1	chr22	38320724	+	DNAL4	chr22	39178875	-
intron-intron	ENST00000402631	ENST00000486019		TCGA	RV	SARC	TCGA-DX-AB32-01A	MICALL1	chr22	38320724	+	DNAL4	chr22	39178875	-
intron-5UTR	ENST00000402631	ENST00000406199		TCGA	RV	SARC	TCGA-DX-AB32-01A	MICALL1	chr22	38320724	+	DNAL4	chr22	39178875	-
Frame-shit	ENST00000228506	ENST00000261653		TCGA	RV	SARC	TCGA-QC-AA9N-01A	MLEC	chr12	121125334	+	STX2	chr12	131306333	-
Frame-shit	ENST00000228506	ENST00000392373		TCGA	RV	SARC	TCGA-QC-AA9N-01A	MLEC	chr12	121125334	+	STX2	chr12	131306333	-
Frame-shit	ENST00000412616	ENST00000261653		TCGA	RV	SARC	TCGA-QC-AA9N-01A	MLEC	chr12	121125334	+	STX2	chr12	131306333	-
Frame-shit	ENST00000412616	ENST00000392373		TCGA	RV	SARC	TCGA-QC-AA9N-01A	MLEC	chr12	121125334	+	STX2	chr12	131306333	-
intron-3CDS	ENST00000535413	ENST00000261653		TCGA	RV	SARC	TCGA-QC-AA9N-01A	MLEC	chr12	121125334	+	STX2	chr12	131306333	-
intron-3CDS	ENST00000535413	ENST00000392373		TCGA	RV	SARC	TCGA-QC-AA9N-01A	MLEC	chr12	121125334	+	STX2	chr12	131306333	-
5CDS-intron	ENST00000252674	ENST00000594325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MLLT1	chr19	6230581	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000252674	ENST00000392386		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MLLT1	chr19	6230581	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000585588	ENST00000594325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MLLT1	chr19	6230581	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000585588	ENST00000392386		TCGA	RV	SARC	TCGA-3B-A9HL-01A	MLLT1	chr19	6230581	-	CRLF1	chr19	18710656	-
Frame-shit	ENST00000263268	ENST00000357276		TCGA	RV	SARC	TCGA-IS-A3K7-01A	MREG	chr2	216861029	-	SMARCAL1	chr2	217332667	+
Frame-shit	ENST00000263268	ENST00000358207		TCGA	RV	SARC	TCGA-IS-A3K7-01A	MREG	chr2	216861029	-	SMARCAL1	chr2	217332667	+
5CDS-intron	ENST00000263268	ENST00000479008		TCGA	RV	SARC	TCGA-IS-A3K7-01A	MREG	chr2	216861029	-	SMARCAL1	chr2	217332667	+
Frame-shit	ENST00000540320	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000540320	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000400445	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000400445	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000310336	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000310336	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000379939	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
Frame-shit	ENST00000379939	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
intron-3CDS	ENST00000537702	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
intron-3CDS	ENST00000537702	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
intron-3CDS	ENST00000379922	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
intron-3CDS	ENST00000379922	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
intron-3CDS	ENST00000461581	ENST00000380152		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
intron-3CDS	ENST00000461581	ENST00000544455		TCGA	RV	SARC	TCGA-DX-A48J-01A	NBEA	chr13	35770439	+	BRCA2	chr13	32899213	+
In-frame	ENST00000589123	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000589123	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000589123	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000589123	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000589123	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000589123	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000346156	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000346156	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000346156	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000346156	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000346156	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000346156	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000395111	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000395111	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000395111	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000395111	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000395111	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000395111	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000586919	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000586919	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000586919	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000586919	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000586919	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000586919	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000341919	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000341919	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000341919	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000341919	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000341919	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000341919	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000590282	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000590282	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000590282	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000590282	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000590282	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000590282	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000443272	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000443272	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000443272	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000443272	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000443272	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
In-frame	ENST00000443272	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000588839	ENST00000519716		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000588839	ENST00000252773		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000588839	ENST00000428389		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000588839	ENST00000551649		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000588839	ENST00000552293		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000588839	ENST00000550896		TCGA	RV	SARC	TCGA-DX-A8BL-01A	NFIC	chr19	3425175	+	UNC13A	chr19	17722664	-
intron-3CDS	ENST00000427025	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	NHSL1	chr6	139013613	-	LAMA2	chr6	129475650	+
intron-intron	ENST00000427025	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	NHSL1	chr6	139013613	-	LAMA2	chr6	129475650	+
intron-3CDS	ENST00000343505	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	NHSL1	chr6	139013613	-	LAMA2	chr6	129475650	+
intron-intron	ENST00000343505	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	NHSL1	chr6	139013613	-	LAMA2	chr6	129475650	+
intron-3CDS	ENST00000479393	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	NHSL1	chr6	139013613	-	LAMA2	chr6	129475650	+
intron-intron	ENST00000479393	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	NHSL1	chr6	139013613	-	LAMA2	chr6	129475650	+
5CDS-intron	ENST00000277541	ENST00000279907		TCGA	RV	SARC	TCGA-DX-A6BG-01A	NOTCH1	chr9	139408962	-	UHRF1BP1L	chr12	100463947	-
5CDS-intron	ENST00000277541	ENST00000356828		TCGA	RV	SARC	TCGA-DX-A6BG-01A	NOTCH1	chr9	139408962	-	UHRF1BP1L	chr12	100463947	-
5CDS-intron	ENST00000277541	ENST00000545232		TCGA	RV	SARC	TCGA-DX-A6BG-01A	NOTCH1	chr9	139408962	-	UHRF1BP1L	chr12	100463947	-
intron-intron	ENST00000491649	ENST00000279907		TCGA	RV	SARC	TCGA-DX-A6BG-01A	NOTCH1	chr9	139408962	-	UHRF1BP1L	chr12	100463947	-
intron-intron	ENST00000491649	ENST00000356828		TCGA	RV	SARC	TCGA-DX-A6BG-01A	NOTCH1	chr9	139408962	-	UHRF1BP1L	chr12	100463947	-
intron-intron	ENST00000491649	ENST00000545232		TCGA	RV	SARC	TCGA-DX-A6BG-01A	NOTCH1	chr9	139408962	-	UHRF1BP1L	chr12	100463947	-
In-frame	ENST00000353088	ENST00000397668		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000353088	ENST00000264827		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000353088	ENST00000589965		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000476071	ENST00000397668		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000476071	ENST00000264827		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000476071	ENST00000589965		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000216879	ENST00000397668		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000216879	ENST00000264827		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000216879	ENST00000589965		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000381658	ENST00000397668		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000381658	ENST00000264827		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5UTR-5UTR	ENST00000381658	ENST00000589965		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000350991	ENST00000397668		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000350991	ENST00000264827		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
5CDS-5UTR	ENST00000350991	ENST00000589965		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000461211	ENST00000397668		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000461211	ENST00000264827		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
intron-5UTR	ENST00000461211	ENST00000589965		TCGA	RV	SARC	TCGA-FX-A48G-01A	NSFL1C	chr20	1447365	-	HOOK2	chr19	12885711	-
In-frame	ENST00000287437	ENST00000378164		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
5CDS-5UTR	ENST00000287437	ENST00000519355		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
In-frame	ENST00000522563	ENST00000378164		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
5CDS-5UTR	ENST00000522563	ENST00000519355		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
In-frame	ENST00000517315	ENST00000378164		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
5CDS-5UTR	ENST00000517315	ENST00000519355		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
intron-3CDS	ENST00000521460	ENST00000378164		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
intron-5UTR	ENST00000521460	ENST00000519355		TCGA	RV	SARC	TCGA-DX-A48N-01A	NSMCE2	chr8	126163519	+	TAF2	chr8	120774848	-
Frame-shit	ENST00000340413	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000340413	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000340413	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000340413	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000460354	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000460354	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000460354	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
Frame-shit	ENST00000460354	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367403	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367403	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367403	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367403	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367404	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367404	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367404	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000367404	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000463048	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000463048	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000463048	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
intron-3CDS	ENST00000463048	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NUP43	chr6	150059779	-	SHPRH	chr6	146216113	-
In-frame	ENST00000336868	ENST00000419071		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
In-frame	ENST00000336868	ENST00000268835		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
In-frame	ENST00000336868	ENST00000536323		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
5CDS-intron	ENST00000336868	ENST00000542013		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
5CDS-intron	ENST00000336868	ENST00000575337		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000577098	ENST00000419071		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000577098	ENST00000268835		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000577098	ENST00000536323		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000577098	ENST00000542013		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000577098	ENST00000575337		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000575801	ENST00000419071		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000575801	ENST00000268835		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000575801	ENST00000536323		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000575801	ENST00000542013		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000575801	ENST00000575337		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000538650	ENST00000419071		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000538650	ENST00000268835		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000538650	ENST00000536323		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000538650	ENST00000542013		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000538650	ENST00000575337		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000537628	ENST00000419071		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000537628	ENST00000268835		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-3CDS	ENST00000537628	ENST00000536323		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000537628	ENST00000542013		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
intron-intron	ENST00000537628	ENST00000575337		TCGA	RV	SARC	TCGA-HB-A2OT-01A	NXN	chr17	882559	-	PRPSAP2	chr17	18832124	+
5UTR-3CDS	ENST00000313367	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000313367	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000313367	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000313367	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-3CDS	ENST00000431825	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000431825	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000431825	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000431825	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-3CDS	ENST00000352860	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000352860	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000352860	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000352860	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-3CDS	ENST00000353930	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000353930	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000353930	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5UTR-intron	ENST00000353930	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-3CDS	ENST00000396431	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000396431	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000396431	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000396431	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-3CDS	ENST00000409069	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000409069	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000409069	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000409069	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-3CDS	ENST00000396429	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000396429	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000396429	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000396429	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-3CDS	ENST00000487020	ENST00000426263		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000487020	ENST00000475162		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000487020	ENST00000415851		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
intron-intron	ENST00000487020	ENST00000372500		TCGA	RV	SARC	TCGA-DX-A8BS-01A	OSBPL3	chr7	25019505	-	SLC2A1	chr1	43408992	-
5CDS-intron	ENST00000446845	ENST00000307296		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
5CDS-intron	ENST00000446845	ENST00000457054		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
5CDS-intron	ENST00000446845	ENST00000498147		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
5CDS-intron	ENST00000311806	ENST00000307296		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
5CDS-intron	ENST00000311806	ENST00000457054		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
5CDS-intron	ENST00000311806	ENST00000498147		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
intron-intron	ENST00000492714	ENST00000307296		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
intron-intron	ENST00000492714	ENST00000457054		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
intron-intron	ENST00000492714	ENST00000498147		TCGA	RV	SARC	TCGA-LI-A9QH-01A	OXSR1	chr3	38271226	+	PDCD6IP	chr3	33870330	+
intron-3CDS	ENST00000497424	ENST00000443314		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000497424	ENST00000441020		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000497424	ENST00000450366		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000497424	ENST00000233714		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000497424	ENST00000431941		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000316562	ENST00000443314		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000316562	ENST00000441020		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000316562	ENST00000450366		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000316562	ENST00000233714		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000316562	ENST00000431941		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000610179	ENST00000443314		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000610179	ENST00000441020		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000610179	ENST00000450366		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000610179	ENST00000233714		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
Frame-shit	ENST00000610179	ENST00000431941		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000464452	ENST00000443314		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000464452	ENST00000441020		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000464452	ENST00000450366		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000464452	ENST00000233714		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
intron-3CDS	ENST00000464452	ENST00000431941		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PANK2	chr20	3870375	+	LANCL1	chr2	211336800	-
5UTR-5UTR	ENST00000393958	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000393958	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-3UTR	ENST00000393958	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000393958	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-intron	ENST00000393958	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000393960	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000393960	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-3UTR	ENST00000393960	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000393960	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-intron	ENST00000393960	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000355677	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000355677	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-3UTR	ENST00000355677	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000355677	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-intron	ENST00000355677	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000524491	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000524491	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-3UTR	ENST00000524491	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-5UTR	ENST00000524491	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-intron	ENST00000524491	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000529047	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000529047	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-3UTR	ENST00000529047	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000529047	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-intron	ENST00000529047	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000393955	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000393955	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-3UTR	ENST00000393955	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000393955	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-intron	ENST00000393955	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000528224	ENST00000346329		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000528224	ENST00000301843		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-3UTR	ENST00000528224	ENST00000527622		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-5UTR	ENST00000528224	ENST00000376561		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
intron-intron	ENST00000528224	ENST00000538675		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PC	chr11	66719901	-	CTTN	chr11	70251371	+
5UTR-3CDS	ENST00000366882	ENST00000308025		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
5UTR-5UTR	ENST00000366882	ENST00000553182		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
intron-3CDS	ENST00000354448	ENST00000308025		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
intron-5UTR	ENST00000354448	ENST00000553182		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
In-frame	ENST00000539869	ENST00000308025		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
5CDS-5UTR	ENST00000539869	ENST00000553182		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
intron-3CDS	ENST00000535229	ENST00000308025		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
intron-5UTR	ENST00000535229	ENST00000553182		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PDE10A	chr6	166075435	-	DDX23	chr12	49239565	-
5CDS-3UTR	ENST00000359062	ENST00000547990		TCGA	RV	SARC	TCGA-QQ-A5V9-01A	PDE3A	chr12	20523178	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000359062	ENST00000546809		TCGA	RV	SARC	TCGA-QQ-A5V9-01A	PDE3A	chr12	20523178	+	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000359062	ENST00000308796		TCGA	RV	SARC	TCGA-QQ-A5V9-01A	PDE3A	chr12	20523178	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000544307	ENST00000547990		TCGA	RV	SARC	TCGA-QQ-A5V9-01A	PDE3A	chr12	20523178	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000544307	ENST00000546809		TCGA	RV	SARC	TCGA-QQ-A5V9-01A	PDE3A	chr12	20523178	+	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000544307	ENST00000308796		TCGA	RV	SARC	TCGA-QQ-A5V9-01A	PDE3A	chr12	20523178	+	MUCL1	chr12	55248900	+
3UTR-3CDS	ENST00000536985	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
3UTR-3CDS	ENST00000536985	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379789	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379789	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000540253	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000540253	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000317350	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000317350	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379785	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379785	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379782	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379782	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000360521	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000360521	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379775	ENST00000374530		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
In-frame	ENST00000379775	ENST00000302798		TCGA	RV	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2-AKAP2	chr9	112629771	+
5CDS-5UTR	ENST00000422959	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000422959	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000307305	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000307305	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000424760	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000424760	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000415251	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000415251	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000275575	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000275575	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000450574	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000450574	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000416283	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000416283	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000248550	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
5CDS-5UTR	ENST00000248550	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
intron-5UTR	ENST00000454592	ENST00000304056		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
intron-5UTR	ENST00000454592	ENST00000485611		TCGA	RV	SARC	TCGA-IW-A3M4-01A	PHTF2	chr7	77531237	+	KBTBD2	chr7	32919554	-
intron-3CDS	ENST00000512921	ENST00000341500		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PI4K2B	chr4	25236053	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000512921	ENST00000302850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PI4K2B	chr4	25236053	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000507794	ENST00000341500		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PI4K2B	chr4	25236053	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000507794	ENST00000302850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PI4K2B	chr4	25236053	+	INSR	chr19	7267907	-
In-frame	ENST00000264864	ENST00000341500		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PI4K2B	chr4	25236053	+	INSR	chr19	7267907	-
In-frame	ENST00000264864	ENST00000302850		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PI4K2B	chr4	25236053	+	INSR	chr19	7267907	-
5CDS-5UTR	ENST00000549190	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
5CDS-3UTR	ENST00000549190	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000395580	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000395580	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000337898	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000337898	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000358314	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000358314	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000395568	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000395568	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000256678	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000256678	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000449194	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000449194	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000552761	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000552761	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000317560	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000317560	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000432191	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000432191	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000550535	ENST00000299505		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000550535	ENST00000592124		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PPHLN1	chr12	42632463	+	KIAA0355	chr19	34790584	+
5CDS-5UTR	ENST00000356692	ENST00000281708		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000356692	ENST00000603548		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000356692	ENST00000604872		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000356692	ENST00000296555		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000356692	ENST00000263981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000356692	ENST00000393956		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000356692	ENST00000603841		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000356692	ENST00000604095		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-5UTR	ENST00000295862	ENST00000281708		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-5UTR	ENST00000295862	ENST00000603548		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-5UTR	ENST00000295862	ENST00000604872		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-intron	ENST00000295862	ENST00000296555		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-intron	ENST00000295862	ENST00000263981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-intron	ENST00000295862	ENST00000393956		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-intron	ENST00000295862	ENST00000603841		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5UTR-intron	ENST00000295862	ENST00000604095		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000394284	ENST00000281708		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000394284	ENST00000603548		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000394284	ENST00000604872		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000394284	ENST00000296555		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000394284	ENST00000263981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000394284	ENST00000393956		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000394284	ENST00000603841		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000394284	ENST00000604095		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000495566	ENST00000281708		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000495566	ENST00000603548		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-5UTR	ENST00000495566	ENST00000604872		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000495566	ENST00000296555		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000495566	ENST00000263981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000495566	ENST00000393956		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000495566	ENST00000603841		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
5CDS-intron	ENST00000495566	ENST00000604095		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333024	-
Frame-shit	ENST00000413366	ENST00000255882		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
Frame-shit	ENST00000413366	ENST00000572273		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
5CDS-intron	ENST00000413366	ENST00000414196		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
5CDS-intron	ENST00000413366	ENST00000466162		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
3UTR-3CDS	ENST00000583361	ENST00000255882		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
3UTR-3CDS	ENST00000583361	ENST00000572273		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
3UTR-intron	ENST00000583361	ENST00000414196		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
3UTR-intron	ENST00000583361	ENST00000466162		TCGA	RV	SARC	TCGA-HS-A5N9-01A	PRKCA	chr17	64302245	+	PI4KA	chr22	21161746	-
In-frame	ENST00000295874	ENST00000468888		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
In-frame	ENST00000295874	ENST00000399362		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000295874	ENST00000539981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000295874	ENST00000359576		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000295874	ENST00000307312		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000295874	ENST00000480013		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000295874	ENST00000461133		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000295874	ENST00000313350		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000295874	ENST00000487200		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000295874	ENST00000333778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000295874	ENST00000482896		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
In-frame	ENST00000474889	ENST00000468888		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
In-frame	ENST00000474889	ENST00000399362		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000474889	ENST00000539981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000474889	ENST00000359576		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000474889	ENST00000307312		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000474889	ENST00000480013		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-3UTR	ENST00000474889	ENST00000461133		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000474889	ENST00000313350		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000474889	ENST00000487200		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000474889	ENST00000333778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
5CDS-intron	ENST00000474889	ENST00000482896		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3CDS	ENST00000495879	ENST00000468888		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3CDS	ENST00000495879	ENST00000399362		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3UTR	ENST00000495879	ENST00000539981		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3UTR	ENST00000495879	ENST00000359576		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3UTR	ENST00000495879	ENST00000307312		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3UTR	ENST00000495879	ENST00000480013		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-3UTR	ENST00000495879	ENST00000461133		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-intron	ENST00000495879	ENST00000313350		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-intron	ENST00000495879	ENST00000487200		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-intron	ENST00000495879	ENST00000333778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
intron-intron	ENST00000495879	ENST00000482896		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PTPRG	chr3	61989171	+	CLASP2	chr3	33543260	-
Frame-shit	ENST00000424085	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000424085	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000424085	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000424085	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000424085	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000424085	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000424085	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000424085	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000257075	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000257075	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000257075	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000257075	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000257075	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000257075	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000257075	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000257075	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000373747	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000373747	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373747	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373747	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373747	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373747	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373747	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373747	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000426105	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000426105	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000426105	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000426105	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000426105	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000426105	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000426105	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000426105	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000440538	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000440538	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000440538	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000440538	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000440538	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000440538	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000440538	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000440538	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
In-frame	ENST00000373741	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
In-frame	ENST00000373741	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373741	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373741	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373741	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373741	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373741	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373741	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000423018	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
Frame-shit	ENST00000423018	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000423018	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000423018	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000423018	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000423018	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000423018	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000423018	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
In-frame	ENST00000373742	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
In-frame	ENST00000373742	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373742	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373742	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373742	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373742	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373742	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
5CDS-intron	ENST00000373742	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-3CDS	ENST00000490546	ENST00000478691		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-3CDS	ENST00000490546	ENST00000374616		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-intron	ENST00000490546	ENST00000476660		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-intron	ENST00000490546	ENST00000374612		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-intron	ENST00000490546	ENST00000302271		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-intron	ENST00000490546	ENST00000427764		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-intron	ENST00000490546	ENST00000606561		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
intron-intron	ENST00000490546	ENST00000426846		TCGA	RV	SARC	TCGA-IS-A3KA-01A	PUM1	chr1	31532051	-	HNRNPR	chr1	23648156	-
In-frame	ENST00000344041	ENST00000309982		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000344041	ENST00000438105		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000344041	ENST00000297574		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000344041	ENST00000330955		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000344041	ENST00000306391		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000344041	ENST00000523754		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5UTR-3CDS	ENST00000475788	ENST00000309982		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5UTR-intron	ENST00000475788	ENST00000438105		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5UTR-intron	ENST00000475788	ENST00000297574		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5UTR-intron	ENST00000475788	ENST00000330955		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5UTR-intron	ENST00000475788	ENST00000306391		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5UTR-intron	ENST00000475788	ENST00000523754		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
In-frame	ENST00000405243	ENST00000309982		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000405243	ENST00000438105		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000405243	ENST00000297574		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000405243	ENST00000330955		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000405243	ENST00000306391		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000405243	ENST00000523754		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
intron-3CDS	ENST00000401957	ENST00000309982		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
intron-intron	ENST00000401957	ENST00000438105		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
intron-intron	ENST00000401957	ENST00000297574		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
intron-intron	ENST00000401957	ENST00000330955		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
intron-intron	ENST00000401957	ENST00000306391		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
intron-intron	ENST00000401957	ENST00000523754		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RAPGEF5	chr7	22306583	-	BAALC	chr8	104225147	+
5CDS-intron	ENST00000404969	ENST00000504452		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
5CDS-3UTR	ENST00000404969	ENST00000508061		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
5CDS-5UTR	ENST00000404969	ENST00000339711		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
5CDS-intron	ENST00000404969	ENST00000415738		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000437042	ENST00000504452		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-3UTR	ENST00000437042	ENST00000508061		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-5UTR	ENST00000437042	ENST00000339711		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000437042	ENST00000415738		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000330688	ENST00000504452		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-3UTR	ENST00000330688	ENST00000508061		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-5UTR	ENST00000330688	ENST00000339711		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000330688	ENST00000415738		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000462272	ENST00000504452		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-3UTR	ENST00000462272	ENST00000508061		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-5UTR	ENST00000462272	ENST00000339711		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000462272	ENST00000415738		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000458646	ENST00000504452		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-3UTR	ENST00000458646	ENST00000508061		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-5UTR	ENST00000458646	ENST00000339711		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
intron-intron	ENST00000458646	ENST00000415738		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RARB	chr3	25216066	+	PRDM8	chr4	81112626	+
5CDS-5UTR	ENST00000267163	ENST00000542956		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-5UTR	ENST00000267163	ENST00000554572		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-5UTR	ENST00000267163	ENST00000353772		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-5UTR	ENST00000267163	ENST00000358599		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-intron	ENST00000267163	ENST00000555278		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-intron	ENST00000267163	ENST00000553796		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-5UTR	ENST00000267163	ENST00000357782		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-intron	ENST00000267163	ENST00000557772		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-5UTR	ENST00000267163	ENST00000341099		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-5UTR	ENST00000267163	ENST00000267525		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
5CDS-intron	ENST00000267163	ENST00000555483		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000542956		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000554572		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000353772		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000358599		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-intron	ENST00000484879	ENST00000555278		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-intron	ENST00000484879	ENST00000553796		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000357782		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-intron	ENST00000484879	ENST00000557772		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000341099		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-5UTR	ENST00000484879	ENST00000267525		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
intron-intron	ENST00000484879	ENST00000555483		TCGA	RV	SARC	TCGA-X2-A95T-01A	RB1	chr13	48955579	+	ESR2	chr14	64749793	-
3UTR-3CDS	ENST00000525754	ENST00000534749		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-3CDS	ENST00000525754	ENST00000436757		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-3CDS	ENST00000525754	ENST00000356404		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-5UTR	ENST00000525754	ENST00000526450		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-3CDS	ENST00000310046	ENST00000534749		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-3CDS	ENST00000310046	ENST00000436757		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-3CDS	ENST00000310046	ENST00000356404		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
3UTR-5UTR	ENST00000310046	ENST00000526450		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000531969	ENST00000534749		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000531969	ENST00000436757		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000531969	ENST00000356404		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-5UTR	ENST00000531969	ENST00000526450		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
5UTR-3CDS	ENST00000529195	ENST00000534749		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
5UTR-3CDS	ENST00000529195	ENST00000436757		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
5UTR-3CDS	ENST00000529195	ENST00000356404		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
5UTR-5UTR	ENST00000529195	ENST00000526450		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000524637	ENST00000534749		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000524637	ENST00000436757		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000524637	ENST00000356404		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-5UTR	ENST00000524637	ENST00000526450		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000531036	ENST00000534749		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000531036	ENST00000436757		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-3CDS	ENST00000531036	ENST00000356404		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
intron-5UTR	ENST00000531036	ENST00000526450		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RBM4B	chr11	66436086	-	PITPNM1	chr11	67261064	-
5CDS-5UTR	ENST00000357277	ENST00000368655		TCGA	RV	SARC	TCGA-DX-A1KY-01A	REPS2	chrX	16965257	+	GATAD2B	chr1	153800824	-
5CDS-5UTR	ENST00000303843	ENST00000368655		TCGA	RV	SARC	TCGA-DX-A1KY-01A	REPS2	chrX	16965257	+	GATAD2B	chr1	153800824	-
intron-5UTR	ENST00000380064	ENST00000368655		TCGA	RV	SARC	TCGA-DX-A1KY-01A	REPS2	chrX	16965257	+	GATAD2B	chr1	153800824	-
intron-5UTR	ENST00000469714	ENST00000368655		TCGA	RV	SARC	TCGA-DX-A1KY-01A	REPS2	chrX	16965257	+	GATAD2B	chr1	153800824	-
5CDS-5UTR	ENST00000336451	ENST00000461783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000336451	ENST00000449545		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000336451	ENST00000367174		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000336451	ENST00000456144		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000336451	ENST00000318981		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000336451	ENST00000360366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000336451	ENST00000529824		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000336451	ENST00000456877		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000336451	ENST00000528391		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000336451	ENST00000275246		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000367303	ENST00000461783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000367303	ENST00000449545		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000367303	ENST00000367174		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000367303	ENST00000456144		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-5UTR	ENST00000367303	ENST00000318981		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000367303	ENST00000360366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000367303	ENST00000529824		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000367303	ENST00000456877		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000367303	ENST00000528391		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
5CDS-intron	ENST00000367303	ENST00000275246		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-5UTR	ENST00000491268	ENST00000461783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-intron	ENST00000491268	ENST00000449545		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-5UTR	ENST00000491268	ENST00000367174		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-5UTR	ENST00000491268	ENST00000456144		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-5UTR	ENST00000491268	ENST00000318981		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-intron	ENST00000491268	ENST00000360366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-intron	ENST00000491268	ENST00000529824		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-intron	ENST00000491268	ENST00000456877		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-intron	ENST00000491268	ENST00000528391		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
intron-intron	ENST00000491268	ENST00000275246		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RMND1	chr6	151742380	-	TIAM2	chr6	155448624	+
Frame-shit	ENST00000534797	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
5CDS-intron	ENST00000534797	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
Frame-shit	ENST00000397614	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
5CDS-intron	ENST00000397614	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
Frame-shit	ENST00000397615	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
5CDS-intron	ENST00000397615	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
In-frame	ENST00000397604	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
5CDS-intron	ENST00000397604	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000533410	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000533410	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000438658	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000438658	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000354420	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000354420	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000356187	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000356187	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000533592	ENST00000371817		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000533592	ENST00000464187		TCGA	RV	SARC	TCGA-DX-AB2H-01A	RNH1	chr11	494515	-	COL5A1	chr9	137533620	+
intron-5UTR	ENST00000487694	ENST00000460780		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000367318		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000367322		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000367315		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000236918		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000360372		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000367317		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000458432		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000421663		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000367320		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000487694	ENST00000509001		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000460780		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000367318		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000367322		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000367315		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000236918		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000360372		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000367317		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000458432		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000421663		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000367320		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000461745	ENST00000509001		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000460780		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000367318		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000367322		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000367315		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000236918		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000360372		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000367317		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000458432		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000421663		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000367320		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000332191	ENST00000509001		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000460780		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000367318		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000367322		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000367315		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000236918		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000360372		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000367317		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000458432		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000421663		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000367320		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
intron-5UTR	ENST00000469233	ENST00000509001		TCGA	RV	SARC	TCGA-DX-A3U6-01A	ROBO2	chr3	77089997	+	TNNT2	chr1	201328791	-
5CDS-5UTR	ENST00000529163	ENST00000265113		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000529163	ENST00000506725		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000529163	ENST00000381918		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000394920	ENST00000265113		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000394920	ENST00000506725		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000394920	ENST00000381918		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000527914	ENST00000265113		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000527914	ENST00000506725		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000527914	ENST00000381918		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-5UTR	ENST00000262584	ENST00000265113		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000262584	ENST00000506725		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5CDS-intron	ENST00000262584	ENST00000381918		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
intron-5UTR	ENST00000528957	ENST00000265113		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
intron-intron	ENST00000528957	ENST00000506725		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
intron-intron	ENST00000528957	ENST00000381918		TCGA	RV	SARC	TCGA-DX-A8BP-01A	RPL8	chr8	146015155	-	SLC1A3	chr5	36606541	+
5UTR-3CDS	ENST00000523629	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
5UTR-3CDS	ENST00000523629	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
5UTR-3CDS	ENST00000523629	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
5UTR-3UTR	ENST00000523629	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
5UTR-5UTR	ENST00000523629	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
5UTR-5UTR	ENST00000523629	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000396218	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000396218	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000396218	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000396218	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000396218	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000396218	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000265814	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000265814	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000265814	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000265814	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000265814	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000265814	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000360348	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000360348	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000360348	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000360348	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000360348	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000360348	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000436581	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000436581	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000436581	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000436581	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000436581	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000436581	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000520724	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000520724	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000520724	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000520724	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000520724	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000520724	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000518844	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000518844	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000518844	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000518844	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000518844	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000518844	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000522163	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000522163	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000522163	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000522163	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000522163	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000522163	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000422361	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000422361	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000422361	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000422361	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000422361	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000422361	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000521553	ENST00000418930		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000521553	ENST00000256117		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3CDS	ENST00000521553	ENST00000416274		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-3UTR	ENST00000521553	ENST00000519128		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000521553	ENST00000517476		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-5UTR	ENST00000521553	ENST00000521429		TCGA	RV	SARC	TCGA-DX-A3M1-01A	RUNX1T1	chr8	93115085	-	E2F5	chr8	86114382	+
intron-intron	ENST00000337221	ENST00000378300		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
intron-5UTR	ENST00000337221	ENST00000378292		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
intron-intron	ENST00000337221	ENST00000329305		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
intron-intron	ENST00000337221	ENST00000360958		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
5CDS-intron	ENST00000301904	ENST00000378300		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
5CDS-5UTR	ENST00000301904	ENST00000378292		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
5CDS-intron	ENST00000301904	ENST00000329305		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
5CDS-intron	ENST00000301904	ENST00000360958		TCGA	RV	SARC	TCGA-DX-A3U9-01A	SCARA3	chr8	27530537	+	TPM2	chr9	35689919	-
Frame-shit	ENST00000313050	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000313050	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000313050	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000313050	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-3CDS	ENST00000467838	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-3CDS	ENST00000467838	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-intron	ENST00000467838	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-intron	ENST00000467838	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000371706	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000371706	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000371706	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000371706	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-3CDS	ENST00000313084	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-3CDS	ENST00000313084	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-intron	ENST00000313084	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-intron	ENST00000313084	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000290037	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000290037	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000290037	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000290037	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000431893	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000431893	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000431893	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
5CDS-intron	ENST00000431893	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-3CDS	ENST00000398335	ENST00000260126		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-3CDS	ENST00000398335	ENST00000524945		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-intron	ENST00000398335	ENST00000530307		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
intron-intron	ENST00000398335	ENST00000528658		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SEC16A	chr9	139353586	-	SLCO5A1	chr8	70650439	-
Frame-shit	ENST00000398844	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000398844	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000398844	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000398844	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000398844	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000398844	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
5CDS-intron	ENST00000398844	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000322887	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000322887	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000322887	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000322887	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000322887	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
Frame-shit	ENST00000322887	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
5CDS-intron	ENST00000322887	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SEC24A	chr5	133984863	+	CDH18	chr5	19544114	-
5CDS-5UTR	ENST00000230640	ENST00000424459		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-intron	ENST00000230640	ENST00000514387		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000230640	ENST00000506184		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000230640	ENST00000454432		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000230640	ENST00000511209		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-intron	ENST00000230640	ENST00000264779		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-intron	ENST00000230640	ENST00000538707		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000545714	ENST00000424459		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-intron	ENST00000545714	ENST00000514387		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000545714	ENST00000506184		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000545714	ENST00000454432		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-5UTR	ENST00000545714	ENST00000511209		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-intron	ENST00000545714	ENST00000264779		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
5CDS-intron	ENST00000545714	ENST00000538707		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-5UTR	ENST00000504388	ENST00000424459		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-intron	ENST00000504388	ENST00000514387		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-5UTR	ENST00000504388	ENST00000506184		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-5UTR	ENST00000504388	ENST00000454432		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-5UTR	ENST00000504388	ENST00000511209		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-intron	ENST00000504388	ENST00000264779		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
3UTR-intron	ENST00000504388	ENST00000538707		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SKIV2L2	chr5	54603975	+	GPBP1	chr5	56509901	+
In-frame	ENST00000552432	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552432	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552432	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552432	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552432	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552432	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552432	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552432	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552432	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
In-frame	ENST00000547379	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000547379	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000547379	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000547379	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000547379	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000547379	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000547379	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000547379	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000547379	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-3CDS	ENST00000549465	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549465	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549465	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549465	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549465	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549465	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549465	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549465	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549465	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
In-frame	ENST00000552024	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552024	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552024	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552024	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000552024	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552024	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552024	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552024	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000552024	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
In-frame	ENST00000261187	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000261187	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000261187	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000261187	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000261187	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000261187	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000261187	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000261187	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000261187	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
In-frame	ENST00000543448	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543448	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543448	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543448	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-5UTR	ENST00000543448	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543448	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543448	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543448	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
5CDS-intron	ENST00000543448	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-3CDS	ENST00000549588	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549588	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549588	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549588	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-5UTR	ENST00000549588	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549588	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549588	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549588	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
intron-intron	ENST00000549588	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SLC16A7	chr12	60169256	+	BEST3	chr12	70072673	-
In-frame	ENST00000374723	ENST00000374530		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000374723	ENST00000302798		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000374720	ENST00000374530		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000374720	ENST00000302798		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000374724	ENST00000374530		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000374724	ENST00000302798		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
intron-3CDS	ENST00000343170	ENST00000374530		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
intron-3CDS	ENST00000343170	ENST00000302798		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
intron-3CDS	ENST00000607692	ENST00000374530		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
intron-3CDS	ENST00000607692	ENST00000302798		TCGA	RV	SARC	TCGA-SI-A71Q-01A	SLC44A1	chr9	108007185	+	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000417961	ENST00000371711		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC9A8	chr20	48431726	+	B4GALT5	chr20	48273239	-
In-frame	ENST00000361573	ENST00000371711		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC9A8	chr20	48431726	+	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000541138	ENST00000371711		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC9A8	chr20	48431726	+	B4GALT5	chr20	48273239	-
5UTR-3CDS	ENST00000539601	ENST00000371711		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC9A8	chr20	48431726	+	B4GALT5	chr20	48273239	-
intron-3CDS	ENST00000490250	ENST00000371711		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC9A8	chr20	48431726	+	B4GALT5	chr20	48273239	-
Frame-shit	ENST00000254480	ENST00000300896		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000254480	ENST00000592339		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000254480	ENST00000393003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5CDS-intron	ENST00000254480	ENST00000586881		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5UTR-3CDS	ENST00000425518	ENST00000300896		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000425518	ENST00000592339		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000425518	ENST00000393003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
5UTR-intron	ENST00000425518	ENST00000586881		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SMARCC1	chr3	47727539	-	USP32	chr17	58422969	-
In-frame	ENST00000544865	ENST00000377966		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
5CDS-intron	ENST00000544865	ENST00000479053		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
In-frame	ENST00000263073	ENST00000377966		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
5CDS-intron	ENST00000263073	ENST00000479053		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
In-frame	ENST00000354901	ENST00000377966		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
5CDS-intron	ENST00000354901	ENST00000479053		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
In-frame	ENST00000536871	ENST00000377966		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
5CDS-intron	ENST00000536871	ENST00000479053		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
intron-3CDS	ENST00000573166	ENST00000377966		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
intron-intron	ENST00000573166	ENST00000479053		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SMG6	chr17	2139786	-	RECK	chr9	36107973	+
Frame-shit	ENST00000336278	ENST00000308159		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
Frame-shit	ENST00000336278	ENST00000569842		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
Frame-shit	ENST00000336278	ENST00000564887		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
5CDS-intron	ENST00000336278	ENST00000569595		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
5CDS-intron	ENST00000336278	ENST00000542526		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
intron-3CDS	ENST00000528525	ENST00000308159		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
intron-3CDS	ENST00000528525	ENST00000569842		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
intron-3CDS	ENST00000528525	ENST00000564887		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
intron-intron	ENST00000528525	ENST00000569595		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
intron-intron	ENST00000528525	ENST00000542526		TCGA	RV	SARC	TCGA-VT-A80G-01A	SNTB2	chr16	69304188	+	NUP93	chr16	56852576	+
Frame-shit	ENST00000546136	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
In-frame	ENST00000381381	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
In-frame	ENST00000309359	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
Frame-shit	ENST00000451604	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
Frame-shit	ENST00000537393	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
Frame-shit	ENST00000541536	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
intron-3CDS	ENST00000396007	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
Frame-shit	ENST00000545921	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
intron-3CDS	ENST00000541847	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
intron-3CDS	ENST00000441133	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
intron-3CDS	ENST00000536850	ENST00000261170		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	SOX5	chr12	23818378	-	GUCY2C	chr12	14766225	-
Frame-shit	ENST00000264052	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000264052	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000264052	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000264052	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000264052	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000264052	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000264052	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000264052	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409112	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409112	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409112	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409112	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409112	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409112	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000409112	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000409112	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000340126	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000340126	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000340126	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000340126	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000340126	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000340126	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000340126	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000340126	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000427101	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000427101	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000427101	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000427101	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000427101	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000427101	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000427101	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000427101	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409824	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409824	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409824	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409824	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409824	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409824	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000409824	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000409824	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409341	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409341	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409341	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409341	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409341	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000409341	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000409341	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000409341	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000341950	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000341950	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000341950	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000341950	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000341950	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
Frame-shit	ENST00000341950	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000341950	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
5CDS-intron	ENST00000341950	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-3CDS	ENST00000409897	ENST00000373566		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-3CDS	ENST00000409897	ENST00000373563		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-3CDS	ENST00000409897	ENST00000409480		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-3CDS	ENST00000409897	ENST00000409547		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-3CDS	ENST00000409897	ENST00000409196		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-3CDS	ENST00000409897	ENST00000409451		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-intron	ENST00000409897	ENST00000482666		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-intron	ENST00000409897	ENST00000452341		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SP100	chr2	231281043	+	GIGYF2	chr2	233651860	+
intron-intron	ENST00000520643	ENST00000520052		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000520643	ENST00000520734		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000520643	ENST00000518386		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
5CDS-intron	ENST00000251809	ENST00000520052		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
5CDS-intron	ENST00000251809	ENST00000520734		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
5CDS-intron	ENST00000251809	ENST00000518386		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000520508	ENST00000520052		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000520508	ENST00000520734		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000520508	ENST00000518386		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
5CDS-intron	ENST00000388798	ENST00000520052		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
5CDS-intron	ENST00000388798	ENST00000520734		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
5CDS-intron	ENST00000388798	ENST00000518386		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000523302	ENST00000520052		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000523302	ENST00000520734		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
intron-intron	ENST00000523302	ENST00000518386		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	SPAG1	chr8	101245765	+	ANGPT1	chr8	108359325	-
3UTR-3CDS	ENST00000310358	ENST00000256190		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SPON1	chr11	13984689	+	SBF2	chr11	10064528	-
3UTR-5UTR	ENST00000310358	ENST00000527019		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SPON1	chr11	13984689	+	SBF2	chr11	10064528	-
Frame-shit	ENST00000359930	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000359930	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000359930	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000359930	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000359930	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000359930	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000359930	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000359930	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000359930	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000359930	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
Frame-shit	ENST00000484875	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000484875	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000484875	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000484875	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000484875	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000484875	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000484875	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000484875	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000484875	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000484875	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
Frame-shit	ENST00000361612	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000361612	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000361612	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000361612	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000361612	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000361612	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000361612	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000361612	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000361612	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000361612	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
Frame-shit	ENST00000467815	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000467815	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000467815	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000467815	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000467815	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000467815	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000467815	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000467815	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-5UTR	ENST00000467815	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
5CDS-intron	ENST00000467815	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-3CDS	ENST00000478766	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-intron	ENST00000478766	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-intron	ENST00000478766	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-intron	ENST00000478766	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-5UTR	ENST00000478766	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-5UTR	ENST00000478766	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-intron	ENST00000478766	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-intron	ENST00000478766	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-5UTR	ENST00000478766	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
intron-intron	ENST00000478766	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A8BR-01A	SULF2	chr20	46385933	-	PEX5L	chr3	179689453	-
Frame-shit	ENST00000300584	ENST00000534064		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
Frame-shit	ENST00000300584	ENST00000535943		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000300584	ENST00000525931		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000300584	ENST00000529807		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000300584	ENST00000527522		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
Frame-shit	ENST00000409931	ENST00000534064		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
Frame-shit	ENST00000409931	ENST00000535943		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000409931	ENST00000525931		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000409931	ENST00000529807		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000409931	ENST00000527522		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5UTR-3CDS	ENST00000492078	ENST00000534064		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5UTR-3CDS	ENST00000492078	ENST00000535943		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5UTR-intron	ENST00000492078	ENST00000525931		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5UTR-intron	ENST00000492078	ENST00000529807		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
5UTR-intron	ENST00000492078	ENST00000527522		TCGA	RV	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78293961	-	INTS4	chr11	77594998	-
Frame-shit	ENST00000282111	ENST00000357308		TCGA	RV	SARC	TCGA-K1-A6RV-01A	TCF7L1	chr2	85361573	+	GFPT1	chr2	69601245	-
Frame-shit	ENST00000282111	ENST00000361060		TCGA	RV	SARC	TCGA-K1-A6RV-01A	TCF7L1	chr2	85361573	+	GFPT1	chr2	69601245	-
5CDS-5UTR	ENST00000282111	ENST00000494201		TCGA	RV	SARC	TCGA-K1-A6RV-01A	TCF7L1	chr2	85361573	+	GFPT1	chr2	69601245	-
3UTR-3CDS	ENST00000494519	ENST00000357308		TCGA	RV	SARC	TCGA-K1-A6RV-01A	TCF7L1	chr2	85361573	+	GFPT1	chr2	69601245	-
3UTR-3CDS	ENST00000494519	ENST00000361060		TCGA	RV	SARC	TCGA-K1-A6RV-01A	TCF7L1	chr2	85361573	+	GFPT1	chr2	69601245	-
3UTR-5UTR	ENST00000494519	ENST00000494201		TCGA	RV	SARC	TCGA-K1-A6RV-01A	TCF7L1	chr2	85361573	+	GFPT1	chr2	69601245	-
In-frame	ENST00000307741	ENST00000263388		TCGA	RV	SARC	TCGA-FX-A3NK-01A	THOP1	chr19	2785676	+	NOTCH3	chr19	15308389	-
intron-3CDS	ENST00000586677	ENST00000263388		TCGA	RV	SARC	TCGA-FX-A3NK-01A	THOP1	chr19	2785676	+	NOTCH3	chr19	15308389	-
intron-3CDS	ENST00000591149	ENST00000263388		TCGA	RV	SARC	TCGA-FX-A3NK-01A	THOP1	chr19	2785676	+	NOTCH3	chr19	15308389	-
intron-3CDS	ENST00000395212	ENST00000263388		TCGA	RV	SARC	TCGA-FX-A3NK-01A	THOP1	chr19	2785676	+	NOTCH3	chr19	15308389	-
In-frame	ENST00000270538	ENST00000262966		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TIMM44	chr19	8005987	-	MPND	chr19	4345742	+
In-frame	ENST00000270538	ENST00000359935		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TIMM44	chr19	8005987	-	MPND	chr19	4345742	+
In-frame	ENST00000270538	ENST00000599840		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TIMM44	chr19	8005987	-	MPND	chr19	4345742	+
intron-3CDS	ENST00000598968	ENST00000262966		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TIMM44	chr19	8005987	-	MPND	chr19	4345742	+
intron-3CDS	ENST00000598968	ENST00000359935		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TIMM44	chr19	8005987	-	MPND	chr19	4345742	+
intron-3CDS	ENST00000598968	ENST00000599840		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TIMM44	chr19	8005987	-	MPND	chr19	4345742	+
Frame-shit	ENST00000261226	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TMCC3	chr12	95044129	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000261226	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TMCC3	chr12	95044129	-	TRHDE	chr12	72680461	+
intron-3CDS	ENST00000551457	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TMCC3	chr12	95044129	-	TRHDE	chr12	72680461	+
intron-intron	ENST00000551457	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TMCC3	chr12	95044129	-	TRHDE	chr12	72680461	+
intron-3CDS	ENST00000552239	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TMCC3	chr12	95044129	-	TRHDE	chr12	72680461	+
intron-intron	ENST00000552239	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TMCC3	chr12	95044129	-	TRHDE	chr12	72680461	+
5UTR-intron	ENST00000266712	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC6A15	chr12	85286087	-
5UTR-5UTR	ENST00000266712	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC6A15	chr12	85286087	-
5UTR-intron	ENST00000266712	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC6A15	chr12	85286087	-
5UTR-intron	ENST00000266712	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC6A15	chr12	85286087	-
5UTR-5UTR	ENST00000266712	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC6A15	chr12	85286087	-
5UTR-3CDS	ENST00000266712	ENST00000266673		TCGA	RV	SARC	TCGA-DX-A3LT-01A	TMTC3	chr12	88536173	+	TMEM19	chr12	72091060	+
5UTR-3CDS	ENST00000266712	ENST00000549735		TCGA	RV	SARC	TCGA-DX-A3LT-01A	TMTC3	chr12	88536173	+	TMEM19	chr12	72091060	+
5UTR-3CDS	ENST00000314571	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000314571	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000314571	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-intron	ENST00000314571	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000383797	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000383797	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000383797	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-intron	ENST00000383797	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000454502	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000454502	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000454502	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-intron	ENST00000454502	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000402228	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000402228	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000402228	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-intron	ENST00000402228	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000444864	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000444864	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000444864	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-intron	ENST00000444864	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000284995	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000284995	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000284995	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-intron	ENST00000284995	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-3CDS	ENST00000415684	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-3CDS	ENST00000415684	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-3CDS	ENST00000415684	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-intron	ENST00000415684	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-3CDS	ENST00000475595	ENST00000446450		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-3CDS	ENST00000475595	ENST00000354956		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-3CDS	ENST00000475595	ENST00000354449		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
intron-intron	ENST00000475595	ENST00000469654		TCGA	RV	SARC	TCGA-DX-A7EU-01A	TSEN2	chr3	12526016	+	ATG7	chr3	11399892	+
5UTR-3CDS	ENST00000322038	ENST00000336617		TCGA	RV	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923198	+	RNASEH2B	chr13	51501543	+
5UTR-3CDS	ENST00000322038	ENST00000422660		TCGA	RV	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923198	+	RNASEH2B	chr13	51501543	+
5UTR-intron	ENST00000322038	ENST00000495244		TCGA	RV	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923198	+	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000580243	ENST00000336617		TCGA	RV	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923198	+	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000580243	ENST00000422660		TCGA	RV	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923198	+	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000580243	ENST00000495244		TCGA	RV	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923198	+	RNASEH2B	chr13	51501543	+
Frame-shit	ENST00000397906	ENST00000310624		TCGA	RV	SARC	TCGA-IS-A3KA-01A	TTC28	chr22	28385866	-	NEFH	chr22	29881712	+
intron-3CDS	ENST00000490475	ENST00000310624		TCGA	RV	SARC	TCGA-IS-A3KA-01A	TTC28	chr22	28385866	-	NEFH	chr22	29881712	+
5CDS-5UTR	ENST00000371281	ENST00000326956		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371281	ENST00000417664		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371281	ENST00000371320		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371281	ENST00000371319		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371281	ENST00000357475		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000371284	ENST00000326956		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000371284	ENST00000417664		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000371284	ENST00000371320		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000371284	ENST00000371319		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000371284	ENST00000357475		TCGA	RV	SARC	TCGA-PC-A5DP-01A	TTC4	chr1	55199383	+	SSBP3	chr1	54747200	-
Frame-shit	ENST00000373910	ENST00000586622		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
Frame-shit	ENST00000373910	ENST00000588460		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-intron	ENST00000373910	ENST00000591864		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-intron	ENST00000373910	ENST00000590393		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-intron	ENST00000373910	ENST00000593181		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-intron	ENST00000373910	ENST00000355954		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-intron	ENST00000373910	ENST00000336509		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-intron	ENST00000373910	ENST00000590514		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
5CDS-3UTR	ENST00000373910	ENST00000590070		TCGA	RV	SARC	TCGA-SI-A71O-01A	UBE2D1	chr10	60094985	+	MFSD11	chr17	74771079	+
intron-3UTR	ENST00000343638	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000343638	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000343638	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000302904	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000302904	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000302904	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000527034	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000527034	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000527034	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000533177	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000533177	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000533177	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000436088	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000436088	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000436088	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000393606	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000393606	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000393606	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000529383	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000529383	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000529383	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000526094	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000526094	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000526094	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000537550	ENST00000318789		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000537550	ENST00000475937		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000493089		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000484350		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000318779		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000491238		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000498215		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000468577		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000537550	ENST00000472382		TCGA	RV	SARC	TCGA-DX-A48P-01A	UBTF	chr17	42283962	-	FOXP1	chr3	71007472	-
Frame-shit	ENST00000399598	ENST00000262043		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
Frame-shit	ENST00000399598	ENST00000509330		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
Frame-shit	ENST00000399598	ENST00000393387		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
5CDS-intron	ENST00000399598	ENST00000420043		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
intron-3CDS	ENST00000522978	ENST00000262043		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
intron-3CDS	ENST00000522978	ENST00000509330		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
intron-3CDS	ENST00000522978	ENST00000393387		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
intron-intron	ENST00000522978	ENST00000420043		TCGA	RV	SARC	TCGA-FX-A2QS-01A	UBXN2B	chr8	59352329	+	PHF3	chr6	64389901	+
Frame-shit	ENST00000376747	ENST00000377067		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
5CDS-intron	ENST00000376747	ENST00000483422		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000376714	ENST00000377067		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-intron	ENST00000376714	ENST00000483422		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000397618	ENST00000377067		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-intron	ENST00000397618	ENST00000483422		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000467305	ENST00000377067		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-intron	ENST00000467305	ENST00000483422		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-3CDS	ENST00000376712	ENST00000377067		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
intron-intron	ENST00000376712	ENST00000483422		TCGA	RV	SARC	TCGA-DX-AB2T-01A	UGGT2	chr13	96529533	-	GPC5	chr13	93518535	+
Frame-shit	ENST00000353364	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000353364	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000353364	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000280377	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000280377	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000280377	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000393654	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000393654	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000393654	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000550632	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000550632	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000550632	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000312635	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000312635	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000312635	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23R-01A	USP15	chr12	62719714	+	SRGAP1	chr12	64377727	+
In-frame	ENST00000392784	ENST00000388887		TCGA	RV	SARC	TCGA-DX-A1L4-01A	USP30	chr12	109509515	+	STAB2	chr12	104134408	+
In-frame	ENST00000257548	ENST00000388887		TCGA	RV	SARC	TCGA-DX-A1L4-01A	USP30	chr12	109509515	+	STAB2	chr12	104134408	+
intron-3CDS	ENST00000394253	ENST00000244669		TCGA	RV	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	APOBEC2	chr6	41029067	+
In-frame	ENST00000373010	ENST00000244669		TCGA	RV	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	APOBEC2	chr6	41029067	+
intron-3CDS	ENST00000373006	ENST00000244669		TCGA	RV	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	APOBEC2	chr6	41029067	+
intron-3CDS	ENST00000297229	ENST00000244669		TCGA	RV	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	APOBEC2	chr6	41029067	+
intron-3CDS	ENST00000373009	ENST00000244669		TCGA	RV	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	APOBEC2	chr6	41029067	+
Frame-shit	ENST00000274030	ENST00000379406		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
5CDS-intron	ENST00000274030	ENST00000497143		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
5CDS-intron	ENST00000274030	ENST00000379367		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
5CDS-intron	ENST00000274030	ENST00000403412		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
Frame-shit	ENST00000450251	ENST00000379406		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
5CDS-intron	ENST00000450251	ENST00000497143		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
5CDS-intron	ENST00000450251	ENST00000379367		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
5CDS-intron	ENST00000450251	ENST00000403412		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
intron-3CDS	ENST00000510737	ENST00000379406		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
intron-intron	ENST00000510737	ENST00000497143		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
intron-intron	ENST00000510737	ENST00000379367		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
intron-intron	ENST00000510737	ENST00000403412		TCGA	RV	SARC	TCGA-DX-A8BS-01A	USP53	chr4	120177678	+	NAA16	chr13	41932440	+
Frame-shit	ENST00000307179	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
Frame-shit	ENST00000307179	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
5CDS-intron	ENST00000307179	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
Frame-shit	ENST00000433963	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
Frame-shit	ENST00000433963	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
5CDS-intron	ENST00000433963	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
Frame-shit	ENST00000396444	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
Frame-shit	ENST00000396444	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
5CDS-intron	ENST00000396444	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
intron-3CDS	ENST00000425032	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
intron-3CDS	ENST00000425032	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
intron-intron	ENST00000425032	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
intron-3CDS	ENST00000558892	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
intron-3CDS	ENST00000558892	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
intron-intron	ENST00000558892	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A1L0-01A	USP8	chr15	50741682	+	ADAMTSL3	chr15	84700087	+
In-frame	ENST00000356136	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
5CDS-intron	ENST00000356136	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
In-frame	ENST00000528420	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
5CDS-intron	ENST00000528420	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
In-frame	ENST00000533454	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
5CDS-intron	ENST00000533454	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
In-frame	ENST00000531818	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
5CDS-intron	ENST00000531818	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
In-frame	ENST00000532130	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
5CDS-intron	ENST00000532130	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
In-frame	ENST00000539288	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
5CDS-intron	ENST00000539288	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
intron-3CDS	ENST00000525872	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
intron-intron	ENST00000525872	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
intron-3CDS	ENST00000538870	ENST00000275820		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
intron-intron	ENST00000538870	ENST00000460332		TCGA	RV	SARC	TCGA-JV-A75J-01A	UVRAG	chr11	75728024	+	NOM1	chr7	156746797	+
In-frame	ENST00000261381	ENST00000543196		TCGA	RV	SARC	TCGA-DX-A1KU-01A	XYLT1	chr16	17292069	-	GALNT6	chr12	51771151	-
In-frame	ENST00000261381	ENST00000356317		TCGA	RV	SARC	TCGA-DX-A1KU-01A	XYLT1	chr16	17292069	-	GALNT6	chr12	51771151	-
5CDS-intron	ENST00000261381	ENST00000603203		TCGA	RV	SARC	TCGA-DX-A1KU-01A	XYLT1	chr16	17292069	-	GALNT6	chr12	51771151	-
intron-3CDS	ENST00000568226	ENST00000543196		TCGA	RV	SARC	TCGA-DX-A1KU-01A	XYLT1	chr16	17292069	-	GALNT6	chr12	51771151	-
intron-3CDS	ENST00000568226	ENST00000356317		TCGA	RV	SARC	TCGA-DX-A1KU-01A	XYLT1	chr16	17292069	-	GALNT6	chr12	51771151	-
intron-intron	ENST00000568226	ENST00000603203		TCGA	RV	SARC	TCGA-DX-A1KU-01A	XYLT1	chr16	17292069	-	GALNT6	chr12	51771151	-
Frame-shit	ENST00000301011	ENST00000268624		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZC3H18	chr16	88677944	+	ADAD2	chr16	84228048	+
Frame-shit	ENST00000301011	ENST00000315906		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZC3H18	chr16	88677944	+	ADAD2	chr16	84228048	+
5CDS-intron	ENST00000301011	ENST00000567413		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZC3H18	chr16	88677944	+	ADAD2	chr16	84228048	+
Frame-shit	ENST00000452588	ENST00000268624		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZC3H18	chr16	88677944	+	ADAD2	chr16	84228048	+
Frame-shit	ENST00000452588	ENST00000315906		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZC3H18	chr16	88677944	+	ADAD2	chr16	84228048	+
5CDS-intron	ENST00000452588	ENST00000567413		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZC3H18	chr16	88677944	+	ADAD2	chr16	84228048	+
5CDS-5UTR	ENST00000277141	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000277141	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000277141	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000277141	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375961	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375961	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375961	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375961	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375960	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375960	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375960	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375960	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5UTR-5UTR	ENST00000375957	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5UTR-5UTR	ENST00000375957	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5UTR-5UTR	ENST00000375957	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5UTR-5UTR	ENST00000375957	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375963	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375963	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375963	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5CDS-5UTR	ENST00000375963	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000469004	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000469004	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000469004	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000469004	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375948	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375948	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375948	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375948	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375947	ENST00000375543		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375947	ENST00000375544		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375947	ENST00000395538		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
intron-5UTR	ENST00000375947	ENST00000450139		TCGA	RV	SARC	TCGA-K1-A6RU-01A	ZCCHC6	chr9	88934499	-	ASPN	chr9	95237209	-
5UTR-3CDS	ENST00000520584	ENST00000266674		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-intron	ENST00000520584	ENST00000536515		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-intron	ENST00000520584	ENST00000540815		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-3CDS	ENST00000330701	ENST00000266674		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-intron	ENST00000330701	ENST00000536515		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-intron	ENST00000330701	ENST00000540815		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
3UTR-3CDS	ENST00000522233	ENST00000266674		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
3UTR-intron	ENST00000522233	ENST00000536515		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
3UTR-intron	ENST00000522233	ENST00000540815		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-3CDS	ENST00000522452	ENST00000266674		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-intron	ENST00000522452	ENST00000536515		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-intron	ENST00000522452	ENST00000540815		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ZFP41	chr8	144329312	+	LGR5	chr12	71946853	+
5UTR-5UTR	ENST00000334512	ENST00000373115		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ZMIZ1	chr10	80878781	+	CHST3	chr10	73765494	+
intron-5UTR	ENST00000478357	ENST00000373115		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ZMIZ1	chr10	80878781	+	CHST3	chr10	73765494	+
intron-5UTR	ENST00000446377	ENST00000373115		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ZMIZ1	chr10	80878781	+	CHST3	chr10	73765494	+
intron-3CDS	ENST00000426851	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000426851	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000426851	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000426851	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000426851	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-3CDS	ENST00000485111	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000485111	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000485111	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000485111	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000485111	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5UTR-3CDS	ENST00000420008	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5UTR-intron	ENST00000420008	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5UTR-intron	ENST00000420008	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5UTR-intron	ENST00000420008	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5UTR-intron	ENST00000420008	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
Frame-shit	ENST00000475153	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5CDS-intron	ENST00000475153	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5CDS-intron	ENST00000475153	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5CDS-intron	ENST00000475153	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
5CDS-intron	ENST00000475153	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-3CDS	ENST00000483892	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000483892	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000483892	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000483892	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000483892	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-3CDS	ENST00000491174	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000491174	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000491174	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000491174	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000491174	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-3CDS	ENST00000540950	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000540950	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000540950	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000540950	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000540950	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-3CDS	ENST00000335901	ENST00000360057		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000335901	ENST00000538212		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000335901	ENST00000549981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000335901	ENST00000378099		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-intron	ENST00000335901	ENST00000547966		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144463044	-
intron-5UTR	ENST00000588651	ENST00000319888		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF627	chr19	11708445	+	METTL4	chr18	2567653	-
intron-5UTR	ENST00000588651	ENST00000574538		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF627	chr19	11708445	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000361113	ENST00000319888		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF627	chr19	11708445	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000361113	ENST00000574538		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF627	chr19	11708445	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000588174	ENST00000319888		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF627	chr19	11708445	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000588174	ENST00000574538		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF627	chr19	11708445	+	METTL4	chr18	2567653	-
intron-3CDS	ENST00000318560	ENST00000389413		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ABL1	chr9	133589842	+	PTPRN2	chr7	157475629	-
intron-3CDS	ENST00000318560	ENST00000409483		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ABL1	chr9	133589842	+	PTPRN2	chr7	157475629	-
intron-3CDS	ENST00000318560	ENST00000389416		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ABL1	chr9	133589842	+	PTPRN2	chr7	157475629	-
intron-3CDS	ENST00000318560	ENST00000389418		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ABL1	chr9	133589842	+	PTPRN2	chr7	157475629	-
intron-3CDS	ENST00000318560	ENST00000404321		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	ABL1	chr9	133589842	+	PTPRN2	chr7	157475629	-
5UTR-3CDS	ENST00000475338	ENST00000444614		TCGA	RV	SARC	TCGA-IS-A3K6-01A	ACBD6	chr1	180283827	-	CCDC122	chr13	44411565	-
5UTR-intron	ENST00000475338	ENST00000476570		TCGA	RV	SARC	TCGA-IS-A3K6-01A	ACBD6	chr1	180283827	-	CCDC122	chr13	44411565	-
5UTR-intron	ENST00000475338	ENST00000281508		TCGA	RV	SARC	TCGA-IS-A3K6-01A	ACBD6	chr1	180283827	-	CCDC122	chr13	44411565	-
Frame-shit	ENST00000367595	ENST00000444614		TCGA	RV	SARC	TCGA-IS-A3K6-01A	ACBD6	chr1	180283827	-	CCDC122	chr13	44411565	-
5CDS-intron	ENST00000367595	ENST00000476570		TCGA	RV	SARC	TCGA-IS-A3K6-01A	ACBD6	chr1	180283827	-	CCDC122	chr13	44411565	-
5CDS-intron	ENST00000367595	ENST00000281508		TCGA	RV	SARC	TCGA-IS-A3K6-01A	ACBD6	chr1	180283827	-	CCDC122	chr13	44411565	-
5CDS-5UTR	ENST00000395146	ENST00000473559		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
5CDS-5UTR	ENST00000395146	ENST00000503001		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
5CDS-5UTR	ENST00000395146	ENST00000295898		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
intron-5UTR	ENST00000307808	ENST00000473559		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
intron-5UTR	ENST00000307808	ENST00000503001		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
intron-5UTR	ENST00000307808	ENST00000295898		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
intron-5UTR	ENST00000544085	ENST00000473559		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
intron-5UTR	ENST00000544085	ENST00000503001		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
intron-5UTR	ENST00000544085	ENST00000295898		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
3UTR-5UTR	ENST00000511996	ENST00000473559		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
3UTR-5UTR	ENST00000511996	ENST00000503001		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
3UTR-5UTR	ENST00000511996	ENST00000295898		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	AFF1	chr4	87869723	+	C4orf36	chr4	87812746	-
5CDS-5UTR	ENST00000395146	ENST00000273963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000395146	ENST00000498875		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000395146	ENST00000425278		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000395146	ENST00000545252		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000395146	ENST00000512111		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-intron	ENST00000395146	ENST00000506274		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000307808	ENST00000273963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000307808	ENST00000498875		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000307808	ENST00000425278		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000307808	ENST00000545252		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000307808	ENST00000512111		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-intron	ENST00000307808	ENST00000506274		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000544085	ENST00000273963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000544085	ENST00000498875		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000544085	ENST00000425278		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000544085	ENST00000545252		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-5UTR	ENST00000544085	ENST00000512111		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
5CDS-intron	ENST00000544085	ENST00000506274		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
intron-5UTR	ENST00000511996	ENST00000273963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
intron-5UTR	ENST00000511996	ENST00000498875		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
intron-5UTR	ENST00000511996	ENST00000425278		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
intron-5UTR	ENST00000511996	ENST00000545252		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
intron-5UTR	ENST00000511996	ENST00000512111		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
intron-intron	ENST00000511996	ENST00000506274		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AFF1	chr4	88016121	+	KLHL8	chr4	88116842	-
Frame-shit	ENST00000395146	ENST00000566780		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000395146	ENST00000406884		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
In-frame	ENST00000395146	ENST00000539474		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000395146	ENST00000402655		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000395146	ENST00000408984		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000395146	ENST00000355860		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000395146	ENST00000565791		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000395146	ENST00000569818		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000307808	ENST00000566780		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000307808	ENST00000406884		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
In-frame	ENST00000307808	ENST00000539474		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000307808	ENST00000402655		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000307808	ENST00000408984		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000307808	ENST00000355860		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000307808	ENST00000565791		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000307808	ENST00000569818		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000544085	ENST00000566780		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000544085	ENST00000406884		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
In-frame	ENST00000544085	ENST00000539474		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000544085	ENST00000402655		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000544085	ENST00000408984		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000544085	ENST00000355860		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000544085	ENST00000565791		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000544085	ENST00000569818		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000511996	ENST00000566780		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000511996	ENST00000406884		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000511996	ENST00000539474		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-3CDS	ENST00000511996	ENST00000402655		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-intron	ENST00000511996	ENST00000408984		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-intron	ENST00000511996	ENST00000355860		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-intron	ENST00000511996	ENST00000565791		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
intron-intron	ENST00000511996	ENST00000569818		TCGA	RV	SARC	TCGA-DX-AB35-01A	AFF1	chr4	88036451	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000303329	ENST00000410048		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
5CDS-intron	ENST00000303329	ENST00000409337		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
5CDS-intron	ENST00000303329	ENST00000335282		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000533983	ENST00000410048		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000533983	ENST00000409337		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000533983	ENST00000335282		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000527771	ENST00000410048		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000527771	ENST00000409337		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000527771	ENST00000335282		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000531595	ENST00000410048		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000531595	ENST00000409337		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
intron-intron	ENST00000531595	ENST00000335282		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARNT2	chr15	80696888	+	FAM183A	chr1	43610798	+
5UTR-intron	ENST00000368346	ENST00000258349		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-5UTR	ENST00000368346	ENST00000367696		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-intron	ENST00000368346	ENST00000367694		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-intron	ENST00000392403	ENST00000258349		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-5UTR	ENST00000392403	ENST00000367696		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-intron	ENST00000392403	ENST00000367694		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-intron	ENST00000548830	ENST00000258349		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-5UTR	ENST00000548830	ENST00000367696		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
5UTR-intron	ENST00000548830	ENST00000367694		TCGA	RV	SARC	TCGA-DX-AB2S-01A	ASH1L	chr1	155531944	-	RC3H1	chr1	173962273	-
Frame-shit	ENST00000368346	ENST00000368323		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000368346	ENST00000539040		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000368346	ENST00000368322		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000392403	ENST00000368323		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000392403	ENST00000539040		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000392403	ENST00000368322		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000548830	ENST00000368323		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000548830	ENST00000539040		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000548830	ENST00000368322		TCGA	RV	SARC	TCGA-IW-A3M5-01A	ASH1L	chr1	155307880	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000367816	ENST00000229134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	ATP1B1	chr1	169080736	+	IL26	chr12	68619063	-
Frame-shit	ENST00000367815	ENST00000229134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	ATP1B1	chr1	169080736	+	IL26	chr12	68619063	-
Frame-shit	ENST00000499679	ENST00000229134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	ATP1B1	chr1	169080736	+	IL26	chr12	68619063	-
Frame-shit	ENST00000367813	ENST00000229134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	ATP1B1	chr1	169080736	+	IL26	chr12	68619063	-
intron-5UTR	ENST00000348959	ENST00000261401		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000348959	ENST00000541050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000348959	ENST00000549384		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000348959	ENST00000421578		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000348959	ENST00000420959		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000348959	ENST00000549772		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000261173	ENST00000261401		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000261173	ENST00000541050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000261173	ENST00000549384		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000261173	ENST00000421578		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000261173	ENST00000420959		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000261173	ENST00000549772		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000359142	ENST00000261401		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000359142	ENST00000541050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000359142	ENST00000549384		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000359142	ENST00000421578		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000359142	ENST00000420959		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000359142	ENST00000549772		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000428670	ENST00000261401		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000428670	ENST00000541050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000428670	ENST00000549384		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000428670	ENST00000421578		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000428670	ENST00000420959		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000428670	ENST00000549772		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000393164	ENST00000261401		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000393164	ENST00000541050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000393164	ENST00000549384		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000393164	ENST00000421578		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000393164	ENST00000420959		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000393164	ENST00000549772		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000373344	ENST00000440314		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-5UTR	ENST00000373344	ENST00000444507		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-5UTR	ENST00000373344	ENST00000252322		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-intron	ENST00000373344	ENST00000514026		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-5UTR	ENST00000395603	ENST00000440314		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-5UTR	ENST00000395603	ENST00000444507		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-5UTR	ENST00000395603	ENST00000252322		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5CDS-intron	ENST00000395603	ENST00000514026		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5UTR-5UTR	ENST00000480283	ENST00000440314		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5UTR-5UTR	ENST00000480283	ENST00000444507		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5UTR-5UTR	ENST00000480283	ENST00000252322		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
5UTR-intron	ENST00000480283	ENST00000514026		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
intron-5UTR	ENST00000373341	ENST00000440314		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
intron-5UTR	ENST00000373341	ENST00000444507		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
intron-5UTR	ENST00000373341	ENST00000252322		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
intron-intron	ENST00000373341	ENST00000514026		TCGA	RV	SARC	TCGA-DX-A8BK-01A	ATRX	chrX	77041468	-	EFCAB4B	chr12	3822483	-
intron-3CDS	ENST00000328735	ENST00000305249		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
intron-3CDS	ENST00000328735	ENST00000409848		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
intron-intron	ENST00000328735	ENST00000497764		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
Frame-shit	ENST00000330333	ENST00000305249		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
Frame-shit	ENST00000330333	ENST00000409848		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
5CDS-intron	ENST00000330333	ENST00000497764		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
Frame-shit	ENST00000347667	ENST00000305249		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
Frame-shit	ENST00000347667	ENST00000409848		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
5CDS-intron	ENST00000347667	ENST00000497764		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
3UTR-3CDS	ENST00000466122	ENST00000305249		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
3UTR-3CDS	ENST00000466122	ENST00000409848		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
3UTR-intron	ENST00000466122	ENST00000497764		TCGA	RV	SARC	TCGA-DX-A23R-01A	BACE2	chr21	42629253	+	TACR1	chr2	75278574	-
5UTR-3CDS	ENST00000415149	ENST00000338372		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-intron	ENST00000415149	ENST00000376626		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000415149	ENST00000425006		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000415149	ENST00000366170		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3CDS	ENST00000402543	ENST00000338372		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-intron	ENST00000402543	ENST00000376626		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000402543	ENST00000425006		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000402543	ENST00000366170		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3CDS	ENST00000325805	ENST00000338372		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-intron	ENST00000325805	ENST00000376626		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000325805	ENST00000425006		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000325805	ENST00000366170		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3CDS	ENST00000416476	ENST00000338372		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-intron	ENST00000416476	ENST00000376626		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000416476	ENST00000425006		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000416476	ENST00000366170		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-3CDS	ENST00000406780	ENST00000338372		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-intron	ENST00000406780	ENST00000376626		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-3UTR	ENST00000406780	ENST00000425006		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-3UTR	ENST00000406780	ENST00000366170		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-3CDS	ENST00000473542	ENST00000338372		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-intron	ENST00000473542	ENST00000376626		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-3UTR	ENST00000473542	ENST00000425006		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
intron-3UTR	ENST00000473542	ENST00000366170		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BBX	chr3	107245245	+	VSTM1	chr19	54545623	-
Frame-shit	ENST00000216807	ENST00000551492		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000346562		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000341321		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000548645		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000356141		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000357798		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000547068		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000216807	ENST00000551008		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
5CDS-intron	ENST00000216807	ENST00000550662		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000551492		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000346562		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000341321		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000548645		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000356141		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000357798		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000547068		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
Frame-shit	ENST00000543183	ENST00000551008		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
5CDS-intron	ENST00000543183	ENST00000550662		TCGA	RV	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36302311	+	NPAS3	chr14	34029327	+
In-frame	ENST00000179259	ENST00000508784		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
In-frame	ENST00000179259	ENST00000513320		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
In-frame	ENST00000179259	ENST00000379448		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
5CDS-intron	ENST00000179259	ENST00000511534		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
intron-3CDS	ENST00000537251	ENST00000508784		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
intron-3CDS	ENST00000537251	ENST00000513320		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
intron-3CDS	ENST00000537251	ENST00000379448		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
intron-intron	ENST00000537251	ENST00000511534		TCGA	RV	SARC	TCGA-3B-A9HL-01A	C12orf5	chr12	4430469	+	ZNF827	chr4	146744677	-
5CDS-intron	ENST00000311915	ENST00000353364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000311915	ENST00000280377		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000311915	ENST00000393654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000311915	ENST00000550632		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000311915	ENST00000312635		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000544871	ENST00000353364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000544871	ENST00000280377		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000544871	ENST00000393654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000544871	ENST00000550632		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000544871	ENST00000312635		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000398055	ENST00000353364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000398055	ENST00000280377		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000398055	ENST00000393654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000398055	ENST00000550632		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
5CDS-intron	ENST00000398055	ENST00000312635		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
intron-intron	ENST00000540673	ENST00000353364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
intron-intron	ENST00000540673	ENST00000280377		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
intron-intron	ENST00000540673	ENST00000393654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
intron-intron	ENST00000540673	ENST00000550632		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
intron-intron	ENST00000540673	ENST00000312635		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	USP15	chr12	62810878	+
Frame-shit	ENST00000376834	ENST00000361961		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376834	ENST00000395670		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376834	ENST00000544797		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376834	ENST00000361418		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376834	ENST00000541463		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
5CDS-intron	ENST00000376834	ENST00000547745		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376837	ENST00000361961		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376837	ENST00000395670		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376837	ENST00000544797		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376837	ENST00000361418		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376837	ENST00000541463		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
5CDS-intron	ENST00000376837	ENST00000547745		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376830	ENST00000361961		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376830	ENST00000395670		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376830	ENST00000544797		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376830	ENST00000361418		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
Frame-shit	ENST00000376830	ENST00000541463		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
5CDS-intron	ENST00000376830	ENST00000547745		TCGA	RV	SARC	TCGA-DX-A6BE-01A	C9orf41	chr9	77642928	-	KIF21A	chr12	39764063	-
In-frame	ENST00000356860	ENST00000248594		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
5CDS-5UTR	ENST00000356860	ENST00000415482		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
5CDS-5UTR	ENST00000356860	ENST00000435495		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
In-frame	ENST00000356253	ENST00000248594		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
5CDS-5UTR	ENST00000356253	ENST00000415482		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
5CDS-5UTR	ENST00000356253	ENST00000435495		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
In-frame	ENST00000423588	ENST00000248594		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
5CDS-5UTR	ENST00000423588	ENST00000415482		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
5CDS-5UTR	ENST00000423588	ENST00000435495		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
intron-3CDS	ENST00000464354	ENST00000248594		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
intron-5UTR	ENST00000464354	ENST00000415482		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
intron-5UTR	ENST00000464354	ENST00000435495		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
intron-3CDS	ENST00000535308	ENST00000248594		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
intron-5UTR	ENST00000535308	ENST00000415482		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
intron-5UTR	ENST00000535308	ENST00000435495		TCGA	RV	SARC	TCGA-K1-A6RT-01A	CACNA2D1	chr7	81964451	-	PTPN12	chr7	77200395	+
Frame-shit	ENST00000520429	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000520429	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000520429	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5CDS-intron	ENST00000520429	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000369220	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000369220	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000369220	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5CDS-intron	ENST00000369220	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000520371	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000520371	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000520371	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5CDS-intron	ENST00000520371	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
intron-3CDS	ENST00000523799	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
intron-3CDS	ENST00000523799	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
intron-3CDS	ENST00000523799	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
intron-intron	ENST00000523799	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-3CDS	ENST00000523985	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-3CDS	ENST00000523985	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-3CDS	ENST00000523985	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-intron	ENST00000523985	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000518714	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000518714	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000518714	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5CDS-intron	ENST00000518714	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-3CDS	ENST00000521017	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-3CDS	ENST00000521017	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-3CDS	ENST00000521017	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5UTR-intron	ENST00000521017	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000482541	ENST00000358807		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000482541	ENST00000358577		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
Frame-shit	ENST00000482541	ENST00000368952		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
5CDS-intron	ENST00000482541	ENST00000483856		TCGA	RV	SARC	TCGA-DX-AB2T-01A	CCNC	chr6	100016372	-	MICAL1	chr6	109767975	-
In-frame	ENST00000261211	ENST00000392784		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
In-frame	ENST00000261211	ENST00000257548		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
In-frame	ENST00000543119	ENST00000392784		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
In-frame	ENST00000543119	ENST00000257548		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
Frame-shit	ENST00000542666	ENST00000392784		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
Frame-shit	ENST00000542666	ENST00000257548		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
intron-3CDS	ENST00000553042	ENST00000392784		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
intron-3CDS	ENST00000553042	ENST00000257548		TCGA	RV	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96704830	-	USP30	chr12	109505329	+
In-frame	ENST00000264935	ENST00000231021		TCGA	RV	SARC	TCGA-DX-A7EF-01A	CEP72	chr5	639339	+	CDH9	chr5	26903933	-
3UTR-3CDS	ENST00000444221	ENST00000231021		TCGA	RV	SARC	TCGA-DX-A7EF-01A	CEP72	chr5	639339	+	CDH9	chr5	26903933	-
intron-3CDS	ENST00000514507	ENST00000231021		TCGA	RV	SARC	TCGA-DX-A7EF-01A	CEP72	chr5	639339	+	CDH9	chr5	26903933	-
Frame-shit	ENST00000315585	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000315585	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000315585	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000266880	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000266880	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000266880	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000443047	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000443047	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000443047	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000450056	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000450056	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000450056	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000537522	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000537522	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000537522	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
5UTR-3CDS	ENST00000541837	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
5UTR-3CDS	ENST00000541837	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
5UTR-3CDS	ENST00000541837	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000432561	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000432561	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
Frame-shit	ENST00000432561	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000541341	ENST00000304116		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000541341	ENST00000392173		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000541341	ENST00000355114		TCGA	RV	SARC	TCGA-DX-A6B9-01A	CHFR	chr12	133430017	-	ZNF565	chr19	36686058	-
5CDS-5UTR	ENST00000372954	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372954	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000372954	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372954	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372954	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000393608	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000393608	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000393608	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000393608	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000393608	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000541172	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000541172	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000541172	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000541172	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000541172	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000357558	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000357558	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000357558	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000357558	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000357558	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000325721	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000325721	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000325721	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000325721	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000325721	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000538431	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000538431	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000538431	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000538431	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000538431	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000277465	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000277465	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000277465	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000277465	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000277465	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372948	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372948	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000372948	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372948	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372948	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372938	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372938	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-3UTR	ENST00000372938	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372938	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
5CDS-5UTR	ENST00000372938	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
intron-5UTR	ENST00000476727	ENST00000392341		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
intron-5UTR	ENST00000476727	ENST00000582743		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
intron-3UTR	ENST00000476727	ENST00000584781		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
intron-5UTR	ENST00000476727	ENST00000392339		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
intron-5UTR	ENST00000476727	ENST00000581287		TCGA	RV	SARC	TCGA-IE-A3OV-01A	CIZ1	chr9	130938630	-	SLC16A3	chr17	80193859	+
In-frame	ENST00000360467	ENST00000281081		TCGA	RV	SARC	TCGA-FX-A48G-01A	COL4A2	chr13	110960470	+	NUBPL	chr14	32068495	+
In-frame	ENST00000360467	ENST00000536705		TCGA	RV	SARC	TCGA-FX-A48G-01A	COL4A2	chr13	110960470	+	NUBPL	chr14	32068495	+
5CDS-intron	ENST00000360467	ENST00000418681		TCGA	RV	SARC	TCGA-FX-A48G-01A	COL4A2	chr13	110960470	+	NUBPL	chr14	32068495	+
intron-3CDS	ENST00000462309	ENST00000281081		TCGA	RV	SARC	TCGA-FX-A48G-01A	COL4A2	chr13	110960470	+	NUBPL	chr14	32068495	+
intron-3CDS	ENST00000462309	ENST00000536705		TCGA	RV	SARC	TCGA-FX-A48G-01A	COL4A2	chr13	110960470	+	NUBPL	chr14	32068495	+
intron-intron	ENST00000462309	ENST00000418681		TCGA	RV	SARC	TCGA-FX-A48G-01A	COL4A2	chr13	110960470	+	NUBPL	chr14	32068495	+
In-frame	ENST00000382062	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
In-frame	ENST00000382062	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
5CDS-intron	ENST00000382062	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
3UTR-3CDS	ENST00000487365	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
3UTR-3CDS	ENST00000487365	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
3UTR-intron	ENST00000487365	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
Frame-shit	ENST00000236693	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
Frame-shit	ENST00000236693	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
5CDS-intron	ENST00000236693	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
In-frame	ENST00000349077	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
In-frame	ENST00000349077	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
5CDS-intron	ENST00000349077	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
In-frame	ENST00000418971	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
In-frame	ENST00000418971	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
5CDS-intron	ENST00000418971	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000403096	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000403096	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-intron	ENST00000403096	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000402922	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000402922	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-intron	ENST00000402922	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000402794	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000402794	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-intron	ENST00000402794	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000404205	ENST00000554914		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-3CDS	ENST00000404205	ENST00000553390		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
intron-intron	ENST00000404205	ENST00000304501		TCGA	RV	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	SOX7	chr8	10692285	-
In-frame	ENST00000225719	ENST00000321639		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CPD	chr17	28712254	+	TMEM132E	chr17	32953146	+
In-frame	ENST00000543464	ENST00000321639		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CPD	chr17	28712254	+	TMEM132E	chr17	32953146	+
intron-3CDS	ENST00000584051	ENST00000321639		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CPD	chr17	28712254	+	TMEM132E	chr17	32953146	+
In-frame	ENST00000430249	ENST00000427836		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000430249	ENST00000389247		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000430249	ENST00000457206		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
In-frame	ENST00000233072	ENST00000427836		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000233072	ENST00000389247		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000233072	ENST00000457206		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
In-frame	ENST00000451903	ENST00000427836		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000451903	ENST00000389247		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000451903	ENST00000457206		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
intron-3CDS	ENST00000497121	ENST00000427836		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000497121	ENST00000389247		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000497121	ENST00000457206		TCGA	RV	SARC	TCGA-DX-AATS-01A	CPS1	chr2	211481265	+	PLEKHM3	chr2	208693220	-
5CDS-5UTR	ENST00000398519	ENST00000176643		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000398519	ENST00000581518		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000398519	ENST00000395575		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000398519	ENST00000339618		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000398519	ENST00000579855		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000398519	ENST00000571163		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000398519	ENST00000574597		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000314028	ENST00000176643		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000314028	ENST00000581518		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000314028	ENST00000395575		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000314028	ENST00000339618		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000314028	ENST00000579855		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000314028	ENST00000571163		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000314028	ENST00000574597		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000392334	ENST00000176643		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000392334	ENST00000581518		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000392334	ENST00000395575		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-5UTR	ENST00000392334	ENST00000339618		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000392334	ENST00000579855		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000392334	ENST00000571163		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
5CDS-intron	ENST00000392334	ENST00000574597		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-5UTR	ENST00000578904	ENST00000176643		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-5UTR	ENST00000578904	ENST00000581518		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-5UTR	ENST00000578904	ENST00000395575		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-5UTR	ENST00000578904	ENST00000339618		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-intron	ENST00000578904	ENST00000579855		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-intron	ENST00000578904	ENST00000571163		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
intron-intron	ENST00000578904	ENST00000574597		TCGA	RV	SARC	TCGA-DX-A8BG-01A	CSNK1D	chr17	80231182	-	ALDH3A2	chr17	19552248	+
Frame-shit	ENST00000313174	ENST00000358545		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000313174	ENST00000405262		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000313174	ENST00000239849		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000313174	ENST00000398795		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000313174	ENST00000544862		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000305425	ENST00000358545		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000305425	ENST00000405262		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000305425	ENST00000239849		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000305425	ENST00000398795		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000305425	ENST00000544862		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
intron-3CDS	ENST00000354591	ENST00000358545		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
intron-3CDS	ENST00000354591	ENST00000405262		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
intron-3CDS	ENST00000354591	ENST00000239849		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
intron-3CDS	ENST00000354591	ENST00000398795		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
intron-3CDS	ENST00000354591	ENST00000544862		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000359684	ENST00000358545		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000359684	ENST00000405262		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000359684	ENST00000239849		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000359684	ENST00000398795		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
Frame-shit	ENST00000359684	ENST00000544862		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DACH1	chr13	72204688	-	TNFSF11	chr13	43180633	+
intron-3CDS	ENST00000400967	ENST00000535699		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000400967	ENST00000538660		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000400967	ENST00000367400		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000400967	ENST00000367399		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000400967	ENST00000543483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000400967	ENST00000544212		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000400967	ENST00000367397		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3UTR	ENST00000400967	ENST00000476483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000235453	ENST00000535699		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000235453	ENST00000538660		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000235453	ENST00000367400		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000235453	ENST00000367399		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000235453	ENST00000543483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000235453	ENST00000544212		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000235453	ENST00000367397		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3UTR	ENST00000235453	ENST00000476483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000367396	ENST00000535699		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000367396	ENST00000538660		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000367396	ENST00000367400		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000367396	ENST00000367399		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000367396	ENST00000543483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000367396	ENST00000544212		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000367396	ENST00000367397		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3UTR	ENST00000367396	ENST00000476483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000477581	ENST00000535699		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000477581	ENST00000538660		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000477581	ENST00000367400		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000477581	ENST00000367399		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3CDS	ENST00000477581	ENST00000543483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000477581	ENST00000544212		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000477581	ENST00000367397		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-3UTR	ENST00000477581	ENST00000476483		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DENND1B	chr1	197509094	-	CRB1	chr1	197390130	+
intron-5UTR	ENST00000355827	ENST00000476971		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000355827	ENST00000359237		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000373054	ENST00000476971		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000373054	ENST00000359237		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000373061	ENST00000476971		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000373061	ENST00000359237		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000373049	ENST00000476971		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000373049	ENST00000359237		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000324765	ENST00000476971		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-5UTR	ENST00000324765	ENST00000359237		TCGA	RV	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96018119	+	PLAC1	chrX	133736152	-
intron-3CDS	ENST00000378707	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378707	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378707	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000378707	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000359836	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000359836	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000359836	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000359836	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000541735	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000541735	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000541735	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000541735	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000343523	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000343523	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000343523	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000343523	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000378677	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000378677	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000378677	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
5CDS-intron	ENST00000378677	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000357033	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000357033	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000357033	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
5CDS-intron	ENST00000357033	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000474231	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000474231	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000474231	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000474231	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378723	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378723	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378723	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000378723	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378702	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378702	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378702	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000378702	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000361471	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000361471	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000361471	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000361471	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378680	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378680	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000378680	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000378680	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000288447	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000288447	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000288447	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000288447	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000445312	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000445312	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-3CDS	ENST00000445312	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
intron-intron	ENST00000445312	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A240-01A	DMD	chrX	32536125	-	TMEM117	chr12	44605073	+
In-frame	ENST00000251157	ENST00000437682		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
In-frame	ENST00000251157	ENST00000519315		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
In-frame	ENST00000251157	ENST00000379907		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
5CDS-intron	ENST00000251157	ENST00000524303		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
In-frame	ENST00000340370	ENST00000437682		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
In-frame	ENST00000340370	ENST00000519315		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
In-frame	ENST00000340370	ENST00000379907		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
5CDS-intron	ENST00000340370	ENST00000524303		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-3CDS	ENST00000489185	ENST00000437682		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-3CDS	ENST00000489185	ENST00000519315		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-3CDS	ENST00000489185	ENST00000379907		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-intron	ENST00000489185	ENST00000524303		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-3CDS	ENST00000404627	ENST00000437682		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-3CDS	ENST00000404627	ENST00000519315		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-3CDS	ENST00000404627	ENST00000379907		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
intron-intron	ENST00000404627	ENST00000524303		TCGA	RV	SARC	TCGA-SG-A849-01A	DOCK7	chr1	63018403	-	ADAM32	chr8	39080559	+
Frame-shit	ENST00000260605	ENST00000271915		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000260605	ENST00000361147		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000260605	ENST00000358505		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5CDS-intron	ENST00000260605	ENST00000515643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000406852	ENST00000271915		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000406852	ENST00000361147		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000406852	ENST00000358505		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5CDS-intron	ENST00000406852	ENST00000515643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5UTR-3CDS	ENST00000443170	ENST00000271915		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5UTR-3CDS	ENST00000443170	ENST00000361147		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5UTR-3CDS	ENST00000443170	ENST00000358505		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5UTR-intron	ENST00000443170	ENST00000515643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000398823	ENST00000271915		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000398823	ENST00000361147		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000398823	ENST00000358505		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5CDS-intron	ENST00000398823	ENST00000515643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
3UTR-3CDS	ENST00000489222	ENST00000271915		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
3UTR-3CDS	ENST00000489222	ENST00000361147		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
3UTR-3CDS	ENST00000489222	ENST00000358505		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
3UTR-intron	ENST00000489222	ENST00000515643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000605786	ENST00000271915		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000605786	ENST00000361147		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000605786	ENST00000358505		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
5CDS-intron	ENST00000605786	ENST00000515643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DYNC2LI1	chr2	44010693	+	KCNN3	chr1	154698502	-
Frame-shit	ENST00000322886	ENST00000283228		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000322886	ENST00000440835		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000322886	ENST00000537619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000322886	ENST00000378778		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000322886	ENST00000342084		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000322886	ENST00000549308		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
Frame-shit	ENST00000416496	ENST00000283228		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000416496	ENST00000440835		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000416496	ENST00000537619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000416496	ENST00000378778		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000416496	ENST00000342084		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000416496	ENST00000549308		TCGA	RV	SARC	TCGA-FX-A2QS-01A	E2F7	chr12	77426830	-	PTPRR	chr12	71158558	-
Frame-shit	ENST00000254730	ENST00000352690		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
Frame-shit	ENST00000254730	ENST00000283285		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
Frame-shit	ENST00000254730	ENST00000438817		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
intron-3CDS	ENST00000483457	ENST00000352690		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
intron-3CDS	ENST00000483457	ENST00000283285		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
intron-3CDS	ENST00000483457	ENST00000438817		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
intron-3CDS	ENST00000483569	ENST00000352690		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
intron-3CDS	ENST00000483569	ENST00000283285		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
intron-3CDS	ENST00000483569	ENST00000438817		TCGA	RV	SARC	TCGA-DX-A8BR-01A	EEFSEC	chr3	127983624	+	CD96	chr3	111286370	+
Frame-shit	ENST00000440314	ENST00000228567		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-5UTR	ENST00000440314	ENST00000535526		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-intron	ENST00000440314	ENST00000567656		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
Frame-shit	ENST00000444507	ENST00000228567		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-5UTR	ENST00000444507	ENST00000535526		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-intron	ENST00000444507	ENST00000567656		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
Frame-shit	ENST00000252322	ENST00000228567		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-5UTR	ENST00000252322	ENST00000535526		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-intron	ENST00000252322	ENST00000567656		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
intron-3CDS	ENST00000514026	ENST00000228567		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
intron-5UTR	ENST00000514026	ENST00000535526		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
intron-intron	ENST00000514026	ENST00000567656		TCGA	RV	SARC	TCGA-X6-A8C6-01A	EFCAB4B	chr12	3805938	-	SYT10	chr12	33579430	-
5CDS-5UTR	ENST00000327921	ENST00000322611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EML1	chr14	100317372	+	BASP1	chr5	17275317	+
5CDS-5UTR	ENST00000262233	ENST00000322611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EML1	chr14	100317372	+	BASP1	chr5	17275317	+
5CDS-5UTR	ENST00000334192	ENST00000322611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EML1	chr14	100317372	+	BASP1	chr5	17275317	+
3UTR-5UTR	ENST00000556758	ENST00000322611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	EML1	chr14	100317372	+	BASP1	chr5	17275317	+
5CDS-intron	ENST00000344938	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344938	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344938	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344938	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344408	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344408	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344408	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
5CDS-intron	ENST00000344408	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
intron-intron	ENST00000310917	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
intron-intron	ENST00000310917	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
intron-intron	ENST00000310917	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
intron-intron	ENST00000310917	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EVC2	chr4	5710013	-	CPM	chr12	69236109	-
In-frame	ENST00000378204	ENST00000409003		TCGA	RV	SARC	TCGA-IW-A3M5-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000314727		TCGA	RV	SARC	TCGA-IW-A3M5-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	SARC	TCGA-IW-A3M5-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5UTR-intron	ENST00000393500	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
5UTR-intron	ENST00000393500	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393494	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393494	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000403559	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000403559	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000408937	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000408937	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000350908	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000350908	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393498	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393498	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393489	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393489	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393491	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000393491	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000459666	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000459666	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000378237	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000378237	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000360232	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000360232	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000390668	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000390668	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000462331	ENST00000367519		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
intron-intron	ENST00000462331	ENST00000496228		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FOXP2	chr7	113803143	+	EPM2A	chr6	145823711	-
5UTR-intron	ENST00000299293	ENST00000371007		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
5UTR-intron	ENST00000299293	ENST00000371006		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
5UTR-intron	ENST00000299293	ENST00000544837		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000549921	ENST00000371007		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000549921	ENST00000371006		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000549921	ENST00000544837		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000550389	ENST00000371007		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000550389	ENST00000371006		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000550389	ENST00000544837		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000397997	ENST00000371007		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000397997	ENST00000371006		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
intron-intron	ENST00000397997	ENST00000544837		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69931763	+	C1orf141	chr1	67577327	-
5UTR-3CDS	ENST00000299293	ENST00000397901		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000299293	ENST00000253475		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000299293	ENST00000535997		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000299293	ENST00000550102		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000299293	ENST00000547614		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000549921	ENST00000397901		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000549921	ENST00000253475		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000549921	ENST00000535997		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000549921	ENST00000550102		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000549921	ENST00000547614		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000550389	ENST00000397901		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000550389	ENST00000253475		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000550389	ENST00000535997		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000550389	ENST00000550102		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-5UTR	ENST00000550389	ENST00000547614		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000397997	ENST00000397901		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000397997	ENST00000253475		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000397997	ENST00000535997		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
intron-3CDS	ENST00000397997	ENST00000550102		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
intron-5UTR	ENST00000397997	ENST00000547614		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69864310	+	CHMP1A	chr16	89713739	-
5UTR-3CDS	ENST00000299293	ENST00000434748		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-3CDS	ENST00000299293	ENST00000261673		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-intron	ENST00000299293	ENST00000542061		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-3CDS	ENST00000549921	ENST00000434748		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-3CDS	ENST00000549921	ENST00000261673		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-intron	ENST00000549921	ENST00000542061		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-3CDS	ENST00000550389	ENST00000434748		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-3CDS	ENST00000550389	ENST00000261673		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
5UTR-intron	ENST00000550389	ENST00000542061		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
intron-3CDS	ENST00000397997	ENST00000434748		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
intron-3CDS	ENST00000397997	ENST00000261673		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
intron-intron	ENST00000397997	ENST00000542061		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	FBRSL1	chr12	133124589	+
intron-3CDS	ENST00000503238	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000503238	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000503238	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-intron	ENST00000503238	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000358350	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000358350	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000358350	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-intron	ENST00000358350	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000537810	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000537810	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000537810	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-intron	ENST00000537810	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000264319	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000264319	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000264319	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-intron	ENST00000264319	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000507711	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000507711	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-3CDS	ENST00000507711	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5UTR-intron	ENST00000507711	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000514783	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000514783	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000514783	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-intron	ENST00000514783	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000507873	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000507873	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000507873	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-intron	ENST00000507873	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000506685	ENST00000396787		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000506685	ENST00000378495		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000506685	ENST00000378496		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
intron-intron	ENST00000506685	ENST00000481299		TCGA	RV	SARC	TCGA-HB-A2OT-01A	FRYL	chr4	48712536	-	UNC13B	chr9	35366944	+
5CDS-5UTR	ENST00000381971	ENST00000341280		TCGA	RV	SARC	TCGA-VT-A80G-01A	GLIS3	chr9	3932360	-	IL17REL	chr22	50439660	-
5CDS-5UTR	ENST00000381971	ENST00000389983		TCGA	RV	SARC	TCGA-VT-A80G-01A	GLIS3	chr9	3932360	-	IL17REL	chr22	50439660	-
5CDS-5UTR	ENST00000324333	ENST00000341280		TCGA	RV	SARC	TCGA-VT-A80G-01A	GLIS3	chr9	3932360	-	IL17REL	chr22	50439660	-
5CDS-5UTR	ENST00000324333	ENST00000389983		TCGA	RV	SARC	TCGA-VT-A80G-01A	GLIS3	chr9	3932360	-	IL17REL	chr22	50439660	-
5UTR-5UTR	ENST00000461870	ENST00000341280		TCGA	RV	SARC	TCGA-VT-A80G-01A	GLIS3	chr9	3932360	-	IL17REL	chr22	50439660	-
5UTR-5UTR	ENST00000461870	ENST00000389983		TCGA	RV	SARC	TCGA-VT-A80G-01A	GLIS3	chr9	3932360	-	IL17REL	chr22	50439660	-
Frame-shit	ENST00000381971	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
In-frame	ENST00000381971	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
Frame-shit	ENST00000381971	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
Frame-shit	ENST00000381971	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000381971	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
Frame-shit	ENST00000324333	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
Frame-shit	ENST00000324333	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
Frame-shit	ENST00000324333	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
Frame-shit	ENST00000324333	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000324333	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000461870	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000461870	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000461870	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000461870	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
intron-intron	ENST00000461870	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIS3	chr9	4117768	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000370982	ENST00000367033		TCGA	RV	SARC	TCGA-VT-A80J-01A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
5UTR-intron	ENST00000370982	ENST00000483048		TCGA	RV	SARC	TCGA-VT-A80J-01A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
5UTR-3CDS	ENST00000494936	ENST00000367033		TCGA	RV	SARC	TCGA-VT-A80J-01A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
5UTR-intron	ENST00000494936	ENST00000483048		TCGA	RV	SARC	TCGA-VT-A80J-01A	GNG12	chr1	68299027	-	PLXNA2	chr1	208257925	-
intron-3CDS	ENST00000367838	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000367838	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000367838	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000271357	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000271357	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000271357	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
5UTR-3CDS	ENST00000367836	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
5UTR-3CDS	ENST00000367836	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
5UTR-5UTR	ENST00000367836	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000539777	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000539777	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000539777	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000537209	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000537209	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000537209	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000361697	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000361697	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000361697	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000546300	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000546300	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000546300	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000367835	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000367835	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000367835	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000485232	ENST00000268206		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-3CDS	ENST00000485232	ENST00000359445		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
intron-5UTR	ENST00000485232	ENST00000561331		TCGA	RV	SARC	TCGA-DX-A6BG-01A	GPR161	chr1	168105248	-	EFTUD1	chr15	82523312	-
5CDS-intron	ENST00000264235	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000264235	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000316626	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
intron-intron	ENST00000473886	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	GSK3B	chr3	119720893	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000330710	ENST00000557165		TCGA	RV	SARC	TCGA-K1-A42X-02A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000330710	ENST00000389879		TCGA	RV	SARC	TCGA-K1-A42X-02A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000330710	ENST00000555049		TCGA	RV	SARC	TCGA-K1-A42X-02A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000357223	ENST00000557165		TCGA	RV	SARC	TCGA-K1-A42X-02A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000357223	ENST00000389879		TCGA	RV	SARC	TCGA-K1-A42X-02A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000357223	ENST00000555049		TCGA	RV	SARC	TCGA-K1-A42X-02A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
In-frame	ENST00000403681	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000403681	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000403681	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000403681	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000403681	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000403681	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000541363	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000541363	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000541363	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000541363	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000541363	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000541363	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000393577	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000393577	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000393577	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393577	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000393577	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000393577	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000393578	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000393578	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000393578	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000393578	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000393578	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000393578	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000425208	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000425208	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000425208	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000425208	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000425208	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000425208	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000536545	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000536545	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000536545	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536545	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000536545	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000536545	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000354636	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000354636	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000354636	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354636	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000354636	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000354636	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A2J4-01A	HMGA2	chr12	66232349	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000548312	ENST00000204726		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000548312	ENST00000450791		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000548312	ENST00000456883		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000548312	ENST00000537452		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000548312	ENST00000545875		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-intron	ENST00000548312	ENST00000534967		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000242607	ENST00000204726		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000242607	ENST00000450791		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000242607	ENST00000456883		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000242607	ENST00000537452		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000242607	ENST00000545875		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-intron	ENST00000242607	ENST00000534967		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000356742	ENST00000204726		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000356742	ENST00000450791		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000356742	ENST00000456883		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000356742	ENST00000537452		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-3CDS	ENST00000356742	ENST00000545875		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
intron-intron	ENST00000356742	ENST00000534967		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5UTR-3CDS	ENST00000439744	ENST00000204726		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5UTR-3CDS	ENST00000439744	ENST00000450791		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5UTR-3CDS	ENST00000439744	ENST00000456883		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5UTR-3CDS	ENST00000439744	ENST00000537452		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5UTR-3CDS	ENST00000439744	ENST00000545875		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5UTR-intron	ENST00000439744	ENST00000534967		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HVCN1	chr12	111127531	-	GOLGA3	chr12	133385135	-
5CDS-5UTR	ENST00000552912	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000552912	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000552912	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000552912	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000552912	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
3UTR-5UTR	ENST00000242591	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
3UTR-intron	ENST00000242591	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
3UTR-intron	ENST00000242591	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
3UTR-intron	ENST00000242591	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
3UTR-intron	ENST00000242591	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000361948	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000361948	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000361948	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000361948	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000361948	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000549009	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000549009	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000549009	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000549009	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000549009	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110656580	+	TSPAN8	chr12	71835367	-
intron-3CDS	ENST00000316649	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000316649	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000316649	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-intron	ENST00000316649	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000367748	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000367748	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000367748	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-intron	ENST00000367748	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000541547	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000541547	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000541547	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
5UTR-intron	ENST00000541547	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000468393	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000468393	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000468393	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-intron	ENST00000468393	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000367746	ENST00000546373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000367746	ENST00000551568		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000367746	ENST00000338356		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
intron-intron	ENST00000367746	ENST00000549691		TCGA	RV	SARC	TCGA-HB-A3YV-01A	IL20RA	chr6	137365229	-	CPM	chr12	69279669	-
In-frame	ENST00000369304	ENST00000369306		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
Frame-shit	ENST00000369304	ENST00000537888		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
In-frame	ENST00000539363	ENST00000369306		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
Frame-shit	ENST00000539363	ENST00000537888		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
In-frame	ENST00000538811	ENST00000369306		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
Frame-shit	ENST00000538811	ENST00000537888		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
3UTR-3CDS	ENST00000481236	ENST00000369306		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
3UTR-3CDS	ENST00000481236	ENST00000537888		TCGA	RV	SARC	TCGA-PC-A5DO-01A	ITGA10	chr1	145531026	+	PEX11B	chr1	145522514	+
In-frame	ENST00000258111	ENST00000329913		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	KCNMB4	chr12	70794116	+	GDF3	chr12	7843300	-
Frame-shit	ENST00000332180	ENST00000228437		TCGA	RV	SARC	TCGA-KD-A5QS-01A	KIAA1033	chr12	105514982	+	PRDM4	chr12	108147886	-
5CDS-5UTR	ENST00000332180	ENST00000547268		TCGA	RV	SARC	TCGA-KD-A5QS-01A	KIAA1033	chr12	105514982	+	PRDM4	chr12	108147886	-
intron-3CDS	ENST00000547171	ENST00000228437		TCGA	RV	SARC	TCGA-KD-A5QS-01A	KIAA1033	chr12	105514982	+	PRDM4	chr12	108147886	-
intron-5UTR	ENST00000547171	ENST00000547268		TCGA	RV	SARC	TCGA-KD-A5QS-01A	KIAA1033	chr12	105514982	+	PRDM4	chr12	108147886	-
In-frame	ENST00000377669	ENST00000377595		TCGA	RV	SARC	TCGA-SI-AA8C-01A	KLF12	chr13	74518118	-	UCHL3	chr13	76134889	+
5CDS-intron	ENST00000377669	ENST00000606347		TCGA	RV	SARC	TCGA-SI-AA8C-01A	KLF12	chr13	74518118	-	UCHL3	chr13	76134889	+
In-frame	ENST00000377666	ENST00000377595		TCGA	RV	SARC	TCGA-SI-AA8C-01A	KLF12	chr13	74518118	-	UCHL3	chr13	76134889	+
5CDS-intron	ENST00000377666	ENST00000606347		TCGA	RV	SARC	TCGA-SI-AA8C-01A	KLF12	chr13	74518118	-	UCHL3	chr13	76134889	+
5UTR-3CDS	ENST00000472022	ENST00000377595		TCGA	RV	SARC	TCGA-SI-AA8C-01A	KLF12	chr13	74518118	-	UCHL3	chr13	76134889	+
5UTR-intron	ENST00000472022	ENST00000606347		TCGA	RV	SARC	TCGA-SI-AA8C-01A	KLF12	chr13	74518118	-	UCHL3	chr13	76134889	+
Frame-shit	ENST00000266674	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000266674	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000266674	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000266674	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000266674	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000266674	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000536515	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000536515	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000536515	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000536515	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000536515	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000536515	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000540815	ENST00000549396		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000540815	ENST00000550584		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
Frame-shit	ENST00000540815	ENST00000549325		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000545296		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000550359		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000407050		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000333447		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000548586		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000443686		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000540815	ENST00000552948		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000540815	ENST00000541570		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000540815	ENST00000541017		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LGR5	chr12	71928966	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000552864	ENST00000261207		TCGA	RV	SARC	TCGA-3B-A9HY-01A	LIN7A	chr12	81331420	-	PPP1R12A	chr12	80328731	-
5CDS-5UTR	ENST00000552864	ENST00000450142		TCGA	RV	SARC	TCGA-3B-A9HY-01A	LIN7A	chr12	81331420	-	PPP1R12A	chr12	80328731	-
5CDS-5UTR	ENST00000552864	ENST00000437004		TCGA	RV	SARC	TCGA-3B-A9HY-01A	LIN7A	chr12	81331420	-	PPP1R12A	chr12	80328731	-
5CDS-intron	ENST00000552864	ENST00000546369		TCGA	RV	SARC	TCGA-3B-A9HY-01A	LIN7A	chr12	81331420	-	PPP1R12A	chr12	80328731	-
5CDS-intron	ENST00000552864	ENST00000550107		TCGA	RV	SARC	TCGA-3B-A9HY-01A	LIN7A	chr12	81331420	-	PPP1R12A	chr12	80328731	-
In-frame	ENST00000353442	ENST00000348165		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
In-frame	ENST00000353442	ENST00000389103		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
intron-3CDS	ENST00000359422	ENST00000348165		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
intron-3CDS	ENST00000359422	ENST00000389103		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
In-frame	ENST00000354505	ENST00000348165		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
In-frame	ENST00000354505	ENST00000389103		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
In-frame	ENST00000540390	ENST00000348165		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
In-frame	ENST00000540390	ENST00000389103		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
intron-3CDS	ENST00000430825	ENST00000348165		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
intron-3CDS	ENST00000430825	ENST00000389103		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	LMBR1	chr7	156685622	-	UBE3C	chr7	156979528	+
In-frame	ENST00000448637	ENST00000602513		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
In-frame	ENST00000448637	ENST00000264735		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
In-frame	ENST00000312675	ENST00000602513		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
In-frame	ENST00000312675	ENST00000264735		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
In-frame	ENST00000543006	ENST00000602513		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
In-frame	ENST00000543006	ENST00000264735		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
intron-3CDS	ENST00000471917	ENST00000602513		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
intron-3CDS	ENST00000471917	ENST00000264735		TCGA	RV	SARC	TCGA-SI-AA8B-01A	LPP	chr3	188202492	+	HRASLS	chr3	192973440	+
Frame-shit	ENST00000553277	ENST00000262053		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
5CDS-intron	ENST00000553277	ENST00000539132		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
Frame-shit	ENST00000243077	ENST00000262053		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
5CDS-intron	ENST00000243077	ENST00000539132		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
Frame-shit	ENST00000338962	ENST00000262053		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
5CDS-intron	ENST00000338962	ENST00000539132		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
Frame-shit	ENST00000554174	ENST00000262053		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
5CDS-intron	ENST00000554174	ENST00000539132		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
intron-3CDS	ENST00000553446	ENST00000262053		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
intron-intron	ENST00000553446	ENST00000539132		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57539273	+	ATF1	chr12	51189692	+
In-frame	ENST00000539563	ENST00000291458		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
In-frame	ENST00000539563	ENST00000497726		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
5CDS-5UTR	ENST00000539563	ENST00000466854		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
5CDS-5UTR	ENST00000539563	ENST00000479899		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000490035	ENST00000291458		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000490035	ENST00000497726		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000490035	ENST00000466854		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000490035	ENST00000479899		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000498645	ENST00000291458		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-3CDS	ENST00000498645	ENST00000497726		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000498645	ENST00000466854		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
intron-5UTR	ENST00000498645	ENST00000479899		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	LSAMP	chr3	117716029	-	CCDC58	chr3	122081874	-
In-frame	ENST00000375608	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000375608	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000375608	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000375608	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
5CDS-intron	ENST00000375608	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000442652	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000442652	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000442652	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000442652	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
5CDS-intron	ENST00000442652	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375604	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375604	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375604	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375604	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000375604	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397030	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397030	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397030	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397030	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000397030	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000535094	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000535094	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000535094	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000535094	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000535094	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000421756	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000421756	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000421756	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000421756	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000421756	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375601	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375601	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375601	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375601	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000375601	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000397036	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000397036	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000397036	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
In-frame	ENST00000397036	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
5CDS-intron	ENST00000397036	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000434480	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000434480	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000434480	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000434480	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000434480	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000423482	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000423482	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000423482	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000423482	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000423482	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375597	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375597	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375597	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000375597	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000375597	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397024	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397024	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397024	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397024	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000397024	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000480321	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000480321	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000480321	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000480321	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000480321	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397021	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397021	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397021	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-3CDS	ENST00000397021	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
intron-intron	ENST00000397021	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113556685	+	ATP11A	chr13	113478658	+
Frame-shit	ENST00000319080	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
Frame-shit	ENST00000319080	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
Frame-shit	ENST00000319080	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
5CDS-intron	ENST00000319080	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000538698	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000538698	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000538698	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000538698	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000377037	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000377037	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000377037	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000377037	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000535996	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000535996	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-3CDS	ENST00000535996	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
intron-intron	ENST00000535996	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ANKS1B	chr12	99478801	-
In-frame	ENST00000311852	ENST00000280326		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000311852	ENST00000503026		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000311852	ENST00000515390		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000311852	ENST00000515676		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000311852	ENST00000506600		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000548162	ENST00000280326		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548162	ENST00000503026		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548162	ENST00000515390		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548162	ENST00000515676		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
intron-intron	ENST00000548162	ENST00000506600		TCGA	RV	SARC	TCGA-IW-A3M6-01A	MMP14	chr14	23316970	+	CCT5	chr5	10250033	+
In-frame	ENST00000380492	ENST00000337414		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000380492	ENST00000380718		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000380492	ENST00000380732		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000380492	ENST00000534860		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000380492	ENST00000380736		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000380492	ENST00000303025		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000380492	ENST00000413512		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
5CDS-intron	ENST00000380492	ENST00000491514		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000337414		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000380718		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000380732		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000534860		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000380736		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000303025		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000482354	ENST00000413512		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
5CDS-intron	ENST00000482354	ENST00000491514		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000337414		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000380718		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000380732		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000534860		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000380736		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000303025		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
In-frame	ENST00000497603	ENST00000413512		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
5CDS-intron	ENST00000497603	ENST00000491514		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000337414		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000380718		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000380732		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000534860		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000380736		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000303025		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-3CDS	ENST00000495110	ENST00000413512		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
intron-intron	ENST00000495110	ENST00000491514		TCGA	RV	SARC	TCGA-VT-A80J-01A	MOSPD2	chrX	14891880	+	ARHGAP6	chrX	11200238	-
5UTR-3CDS	ENST00000546115	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000546115	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000546115	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000546115	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000546115	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000546115	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000546115	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000546115	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373730	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373730	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373730	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000373730	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373730	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373730	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373730	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373730	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000297908	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000297908	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000297908	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000297908	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000297908	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000297908	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000297908	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000297908	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000344641	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000344641	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000344641	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000344641	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000344641	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000344641	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000344641	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000344641	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373723	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373723	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373723	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000373723	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373723	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373723	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373723	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373723	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373729	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373729	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3CDS	ENST00000373729	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-3UTR	ENST00000373729	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373729	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373729	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373729	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
5UTR-5UTR	ENST00000373729	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3CDS	ENST00000373724	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3CDS	ENST00000373724	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3CDS	ENST00000373724	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3UTR	ENST00000373724	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000373724	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000373724	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000373724	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000373724	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3CDS	ENST00000394315	ENST00000360284		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3CDS	ENST00000394315	ENST00000545748		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3CDS	ENST00000394315	ENST00000550082		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-3UTR	ENST00000394315	ENST00000547206		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000394315	ENST00000243050		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000394315	ENST00000394825		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000394315	ENST00000394824		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
intron-5UTR	ENST00000394315	ENST00000548232		TCGA	RV	SARC	TCGA-DX-A8BV-01A	MRRF	chr9	125027217	+	NR4A1	chr12	52448111	+
Frame-shit	ENST00000262384	ENST00000366935		TCGA	RV	SARC	TCGA-FX-A2QS-01A	N4BP1	chr16	48643686	-	GPATCH2	chr1	217793841	-
5CDS-intron	ENST00000262384	ENST00000489246		TCGA	RV	SARC	TCGA-FX-A2QS-01A	N4BP1	chr16	48643686	-	GPATCH2	chr1	217793841	-
5CDS-intron	ENST00000262384	ENST00000366934		TCGA	RV	SARC	TCGA-FX-A2QS-01A	N4BP1	chr16	48643686	-	GPATCH2	chr1	217793841	-
intron-3CDS	ENST00000565423	ENST00000366935		TCGA	RV	SARC	TCGA-FX-A2QS-01A	N4BP1	chr16	48643686	-	GPATCH2	chr1	217793841	-
intron-intron	ENST00000565423	ENST00000489246		TCGA	RV	SARC	TCGA-FX-A2QS-01A	N4BP1	chr16	48643686	-	GPATCH2	chr1	217793841	-
intron-intron	ENST00000565423	ENST00000366934		TCGA	RV	SARC	TCGA-FX-A2QS-01A	N4BP1	chr16	48643686	-	GPATCH2	chr1	217793841	-
In-frame	ENST00000400546	ENST00000376896		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
In-frame	ENST00000400546	ENST00000396204		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
In-frame	ENST00000284894	ENST00000376896		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
In-frame	ENST00000284894	ENST00000396204		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000535285	ENST00000376896		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000535285	ENST00000396204		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000486367	ENST00000376896		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
intron-3CDS	ENST00000486367	ENST00000396204		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22370936	+	RORB	chr9	77245198	+
5UTR-3CDS	ENST00000349945	ENST00000562982		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000349945	ENST00000305904		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-intron	ENST00000349945	ENST00000568035		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3UTR	ENST00000349945	ENST00000570222		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
In-frame	ENST00000432919	ENST00000562982		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
In-frame	ENST00000432919	ENST00000305904		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5CDS-intron	ENST00000432919	ENST00000568035		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5CDS-3UTR	ENST00000432919	ENST00000570222		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
In-frame	ENST00000354436	ENST00000562982		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
In-frame	ENST00000354436	ENST00000305904		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5CDS-intron	ENST00000354436	ENST00000568035		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5CDS-3UTR	ENST00000354436	ENST00000570222		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
In-frame	ENST00000567239	ENST00000562982		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
In-frame	ENST00000567239	ENST00000305904		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5CDS-intron	ENST00000567239	ENST00000568035		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5CDS-3UTR	ENST00000567239	ENST00000570222		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000393742	ENST00000562982		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000393742	ENST00000305904		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-intron	ENST00000393742	ENST00000568035		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3UTR	ENST00000393742	ENST00000570222		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000566899	ENST00000562982		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3CDS	ENST00000566899	ENST00000305904		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-intron	ENST00000566899	ENST00000568035		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
5UTR-3UTR	ENST00000566899	ENST00000570222		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NFAT5	chr16	69660431	+	DYNLRB2	chr16	80583381	+
Frame-shit	ENST00000564978	ENST00000261588		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
5CDS-intron	ENST00000564978	ENST00000567894		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
In-frame	ENST00000320805	ENST00000261588		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
5CDS-intron	ENST00000320805	ENST00000567894		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
3UTR-3CDS	ENST00000562977	ENST00000261588		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
3UTR-intron	ENST00000562977	ENST00000567894		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
intron-3CDS	ENST00000568148	ENST00000261588		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
intron-intron	ENST00000568148	ENST00000567894		TCGA	RV	SARC	TCGA-X6-A8C2-01A	NFATC2IP	chr16	28963525	+	KIAA0556	chr16	27760905	+
Frame-shit	ENST00000334956	ENST00000339865		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000334956	ENST00000539466		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000334956	ENST00000527733		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000334956	ENST00000399455		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-intron	ENST00000334956	ENST00000305481		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
Frame-shit	ENST00000539723	ENST00000339865		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000539723	ENST00000539466		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000539723	ENST00000527733		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000539723	ENST00000399455		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-intron	ENST00000539723	ENST00000305481		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
Frame-shit	ENST00000550549	ENST00000339865		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000550549	ENST00000539466		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000550549	ENST00000527733		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000550549	ENST00000399455		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-intron	ENST00000550549	ENST00000305481		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-3CDS	ENST00000538608	ENST00000339865		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-5UTR	ENST00000538608	ENST00000539466		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-5UTR	ENST00000538608	ENST00000527733		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-5UTR	ENST00000538608	ENST00000399455		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-intron	ENST00000538608	ENST00000305481		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-3CDS	ENST00000526746	ENST00000339865		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-5UTR	ENST00000526746	ENST00000539466		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-5UTR	ENST00000526746	ENST00000527733		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-5UTR	ENST00000526746	ENST00000399455		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
intron-intron	ENST00000526746	ENST00000305481		TCGA	RV	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11970025	+
5CDS-5UTR	ENST00000420696	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000420696	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000420696	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000401534	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000401534	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000401534	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000559240	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000559240	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000559240	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000367897	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000367897	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000367897	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000540236	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-3UTR	ENST00000540236	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000540236	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000560641	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-3UTR	ENST00000560641	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000560641	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000474046	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-3UTR	ENST00000474046	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000474046	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000485769	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-3UTR	ENST00000485769	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000485769	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000540246	ENST00000544237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-3UTR	ENST00000540246	ENST00000476115		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
intron-5UTR	ENST00000540246	ENST00000242315		TCGA	RV	SARC	TCGA-DX-A1KY-01A	PBX1	chr1	164532548	+	KIAA1045	chr9	34971292	+
5CDS-5UTR	ENST00000310298	ENST00000595125		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000310298	ENST00000423777		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000310298	ENST00000600336		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-5UTR	ENST00000557957	ENST00000595125		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-5UTR	ENST00000557957	ENST00000423777		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-5UTR	ENST00000557957	ENST00000600336		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000394553	ENST00000595125		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000394553	ENST00000423777		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000394553	ENST00000600336		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000339708	ENST00000595125		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000339708	ENST00000423777		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
5CDS-5UTR	ENST00000339708	ENST00000600336		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-5UTR	ENST00000557819	ENST00000595125		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-5UTR	ENST00000557819	ENST00000423777		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-5UTR	ENST00000557819	ENST00000600336		TCGA	RV	SARC	TCGA-DX-A1L0-01A	PDE8A	chr15	85525579	+	ATF5	chr19	50432500	+
intron-3CDS	ENST00000361417	ENST00000262013		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000361417	ENST00000505279		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000361417	ENST00000357122		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000361417	ENST00000509724		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000361417	ENST00000510283		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
5UTR-3CDS	ENST00000356063	ENST00000262013		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
5UTR-3CDS	ENST00000356063	ENST00000505279		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
5UTR-3CDS	ENST00000356063	ENST00000357122		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
5UTR-intron	ENST00000356063	ENST00000509724		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
5UTR-intron	ENST00000356063	ENST00000510283		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000534672	ENST00000262013		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000534672	ENST00000505279		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000534672	ENST00000357122		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000534672	ENST00000509724		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000534672	ENST00000510283		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000527898	ENST00000262013		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000527898	ENST00000505279		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000527898	ENST00000357122		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000527898	ENST00000509724		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000527898	ENST00000510283		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000524713	ENST00000262013		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000524713	ENST00000505279		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-3CDS	ENST00000524713	ENST00000357122		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000524713	ENST00000509724		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
intron-intron	ENST00000524713	ENST00000510283		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118478414	+	SPAG9	chr17	49133843	-
5CDS-3UTR	ENST00000299001	ENST00000281030		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PIWIL4	chr11	94301974	+	THRSP	chr11	77778705	+
intron-3UTR	ENST00000537419	ENST00000281030		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PIWIL4	chr11	94301974	+	THRSP	chr11	77778705	+
5UTR-3CDS	ENST00000321063	ENST00000261180		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
5UTR-intron	ENST00000321063	ENST00000549138		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
5UTR-3CDS	ENST00000359827	ENST00000261180		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
5UTR-intron	ENST00000359827	ENST00000549138		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
5UTR-3CDS	ENST00000423507	ENST00000261180		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
5UTR-intron	ENST00000423507	ENST00000549138		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
intron-3CDS	ENST00000378539	ENST00000261180		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
intron-intron	ENST00000378539	ENST00000549138		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	PLXNA4	chr7	132261181	-	TRHDE	chr12	72680461	+
5CDS-5UTR	ENST00000393179	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000393179	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000313546	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000313546	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000549035	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000549035	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000541909	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000541909	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000549504	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000549504	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000378528	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000378528	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
intron-5UTR	ENST00000546740	ENST00000367674		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
intron-5UTR	ENST00000546740	ENST00000263525		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	POC1B	chr12	89885713	-	TNR	chr1	175375913	-
5CDS-5UTR	ENST00000344034	ENST00000374431		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000344034	ENST00000541779		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-5UTR	ENST00000344034	ENST00000374430		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000344034	ENST00000358883		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000344034	ENST00000538760		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-5UTR	ENST00000350803	ENST00000374431		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000350803	ENST00000541779		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-5UTR	ENST00000350803	ENST00000374430		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000350803	ENST00000358883		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
5CDS-intron	ENST00000350803	ENST00000538760		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PPM1G	chr2	27609956	-	LPAR1	chr9	113735838	-
Frame-shit	ENST00000413366	ENST00000571995		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
5CDS-intron	ENST00000413366	ENST00000571880		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
5CDS-5UTR	ENST00000413366	ENST00000269347		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
5CDS-5UTR	ENST00000413366	ENST00000538809		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
3UTR-3CDS	ENST00000583361	ENST00000571995		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
3UTR-intron	ENST00000583361	ENST00000571880		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
3UTR-5UTR	ENST00000583361	ENST00000269347		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
3UTR-5UTR	ENST00000583361	ENST00000538809		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PRKCA	chr17	64302245	+	RAB40B	chr17	80617533	-
Frame-shit	ENST00000368226	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368226	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368226	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368226	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368226	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368226	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368226	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368226	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368226	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368226	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368227	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368227	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368227	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368227	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368227	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368227	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368227	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368227	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368227	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368227	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000532331	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000532331	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000532331	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000532331	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000532331	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000532331	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000532331	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000532331	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000532331	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000532331	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368213	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368213	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368213	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368213	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368213	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368213	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368213	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368213	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368213	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368213	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368210	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368210	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368210	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368210	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368210	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368210	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368210	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368210	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368210	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368210	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368215	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368215	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368215	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368215	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368215	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368215	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368215	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368215	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368215	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368215	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368207	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368207	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368207	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
Frame-shit	ENST00000368207	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368207	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368207	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368207	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368207	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368207	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5CDS-5UTR	ENST00000368207	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-3CDS	ENST00000524481	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-3CDS	ENST00000524481	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-3CDS	ENST00000524481	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-3CDS	ENST00000524481	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-5UTR	ENST00000524481	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-5UTR	ENST00000524481	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-5UTR	ENST00000524481	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-5UTR	ENST00000524481	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-5UTR	ENST00000524481	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
5UTR-5UTR	ENST00000524481	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-3CDS	ENST00000525459	ENST00000467460		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-3CDS	ENST00000525459	ENST00000263962		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-3CDS	ENST00000525459	ENST00000392649		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-3CDS	ENST00000525459	ENST00000485199		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-5UTR	ENST00000525459	ENST00000468741		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-5UTR	ENST00000525459	ENST00000476138		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-5UTR	ENST00000525459	ENST00000467440		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-5UTR	ENST00000525459	ENST00000472994		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-5UTR	ENST00000525459	ENST00000464614		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
intron-5UTR	ENST00000525459	ENST00000465751		TCGA	RV	SARC	TCGA-DX-A23R-01A	PTPRK	chr6	128505577	-	PEX5L	chr3	179605572	-
In-frame	ENST00000283228	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000283228	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000283228	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000283228	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000440835	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000440835	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000440835	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000440835	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000537619	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000537619	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000537619	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
intron-intron	ENST00000537619	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000378778	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000378778	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000378778	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000378778	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000342084	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000342084	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
In-frame	ENST00000342084	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000342084	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
Frame-shit	ENST00000549308	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
Frame-shit	ENST00000549308	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
Frame-shit	ENST00000549308	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000549308	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A1L4-01A	PTPRR	chr12	71077907	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000283228	ENST00000416284		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-5UTR	ENST00000283228	ENST00000551619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000283228	ENST00000550003		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000283228	ENST00000551449		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000283228	ENST00000549456		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000440835	ENST00000416284		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-5UTR	ENST00000440835	ENST00000551619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000440835	ENST00000550003		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000440835	ENST00000551449		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000440835	ENST00000549456		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
intron-intron	ENST00000537619	ENST00000416284		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
intron-5UTR	ENST00000537619	ENST00000551619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
intron-intron	ENST00000537619	ENST00000550003		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
intron-intron	ENST00000537619	ENST00000551449		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
intron-intron	ENST00000537619	ENST00000549456		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000378778	ENST00000416284		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-5UTR	ENST00000378778	ENST00000551619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000378778	ENST00000550003		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000378778	ENST00000551449		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000378778	ENST00000549456		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000342084	ENST00000416284		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-5UTR	ENST00000342084	ENST00000551619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000342084	ENST00000550003		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000342084	ENST00000551449		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000342084	ENST00000549456		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000549308	ENST00000416284		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-5UTR	ENST00000549308	ENST00000551619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000549308	ENST00000550003		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000549308	ENST00000551449		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
5CDS-intron	ENST00000549308	ENST00000549456		TCGA	RV	SARC	TCGA-DX-AB2F-01A	PTPRR	chr12	71139598	-	FAM19A2	chr12	62417560	-
Frame-shit	ENST00000371655	ENST00000472487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	RAB3B	chr1	52398990	-	MYSM1	chr1	59131303	-
5CDS-5UTR	ENST00000371655	ENST00000493821		TCGA	RV	SARC	TCGA-3B-A9HL-01A	RAB3B	chr1	52398990	-	MYSM1	chr1	59131303	-
5CDS-intron	ENST00000267163	ENST00000503238		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-5UTR	ENST00000267163	ENST00000358350		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-5UTR	ENST00000267163	ENST00000537810		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-5UTR	ENST00000267163	ENST00000264319		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-5UTR	ENST00000267163	ENST00000507711		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-intron	ENST00000267163	ENST00000514783		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-intron	ENST00000267163	ENST00000507873		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5CDS-intron	ENST00000267163	ENST00000506685		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-intron	ENST00000484879	ENST00000503238		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-5UTR	ENST00000484879	ENST00000358350		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-5UTR	ENST00000484879	ENST00000537810		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-5UTR	ENST00000484879	ENST00000264319		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-5UTR	ENST00000484879	ENST00000507711		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-intron	ENST00000484879	ENST00000514783		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-intron	ENST00000484879	ENST00000507873		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
intron-intron	ENST00000484879	ENST00000506685		TCGA	RV	SARC	TCGA-IF-A4AK-01A	RB1	chr13	49039504	+	FRYL	chr4	48636507	-
5UTR-5UTR	ENST00000422057	ENST00000561177		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-5UTR	ENST00000422057	ENST00000348070		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-5UTR	ENST00000422057	ENST00000358417		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-intron	ENST00000422057	ENST00000344273		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-intron	ENST00000422057	ENST00000398181		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-intron	ENST00000422057	ENST00000331826		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-5UTR	ENST00000317318	ENST00000561177		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-5UTR	ENST00000317318	ENST00000348070		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-5UTR	ENST00000317318	ENST00000358417		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-intron	ENST00000317318	ENST00000344273		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-intron	ENST00000317318	ENST00000398181		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-intron	ENST00000317318	ENST00000331826		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-5UTR	ENST00000423270	ENST00000561177		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-5UTR	ENST00000423270	ENST00000348070		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-5UTR	ENST00000423270	ENST00000358417		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-intron	ENST00000423270	ENST00000344273		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-intron	ENST00000423270	ENST00000398181		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5CDS-intron	ENST00000423270	ENST00000331826		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-5UTR	ENST00000559447	ENST00000561177		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-5UTR	ENST00000559447	ENST00000348070		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-5UTR	ENST00000559447	ENST00000358417		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-intron	ENST00000559447	ENST00000344273		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-intron	ENST00000559447	ENST00000398181		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
5UTR-intron	ENST00000559447	ENST00000331826		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RFX7	chr15	56535323	-	PCSK6	chr15	101872236	-
In-frame	ENST00000304685	ENST00000367866		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000304685	ENST00000452019		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000304685	ENST00000429375		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-3UTR	ENST00000304685	ENST00000367865		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-3UTR	ENST00000304685	ENST00000541643		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000304685	ENST00000420254		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000304685	ENST00000367862		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-3CDS	ENST00000536277	ENST00000367866		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-intron	ENST00000536277	ENST00000452019		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-intron	ENST00000536277	ENST00000429375		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-3UTR	ENST00000536277	ENST00000367865		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-3UTR	ENST00000536277	ENST00000541643		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-intron	ENST00000536277	ENST00000420254		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
intron-intron	ENST00000536277	ENST00000367862		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
In-frame	ENST00000360851	ENST00000367866		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000360851	ENST00000452019		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000360851	ENST00000429375		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-3UTR	ENST00000360851	ENST00000367865		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-3UTR	ENST00000360851	ENST00000541643		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000360851	ENST00000420254		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000360851	ENST00000367862		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
In-frame	ENST00000539189	ENST00000367866		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000539189	ENST00000452019		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000539189	ENST00000429375		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-3UTR	ENST00000539189	ENST00000367865		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-3UTR	ENST00000539189	ENST00000541643		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000539189	ENST00000420254		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
5CDS-intron	ENST00000539189	ENST00000367862		TCGA	RV	SARC	TCGA-DX-AB3A-01A	RGL1	chr1	183775619	+	POU2F1	chr1	167384737	+
In-frame	ENST00000005386	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
In-frame	ENST00000005386	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
5CDS-intron	ENST00000005386	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
intron-3CDS	ENST00000548211	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
intron-3CDS	ENST00000548211	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
intron-intron	ENST00000548211	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
Frame-shit	ENST00000432584	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
Frame-shit	ENST00000432584	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
5CDS-intron	ENST00000432584	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
intron-3CDS	ENST00000380650	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
intron-3CDS	ENST00000380650	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
intron-intron	ENST00000380650	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	AVIL	chr12	58197452	-
3UTR-intron	ENST00000492220	ENST00000607093		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
3UTR-5UTR	ENST00000492220	ENST00000368768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-intron	ENST00000401000	ENST00000607093		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-5UTR	ENST00000401000	ENST00000368768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-intron	ENST00000539519	ENST00000607093		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-5UTR	ENST00000539519	ENST00000368768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-intron	ENST00000369067	ENST00000607093		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-5UTR	ENST00000369067	ENST00000368768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-intron	ENST00000369068	ENST00000607093		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-5UTR	ENST00000369068	ENST00000368768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RPRD2	chr1	150390201	+	LCE1C	chr1	152777974	-
5CDS-intron	ENST00000335099	ENST00000533436		TCGA	RV	SARC	TCGA-FX-A3TO-01A	RTN4RL2	chr11	57235563	+	P2RX3	chr11	57135483	+
5CDS-intron	ENST00000335099	ENST00000263314		TCGA	RV	SARC	TCGA-FX-A3TO-01A	RTN4RL2	chr11	57235563	+	P2RX3	chr11	57135483	+
5CDS-intron	ENST00000533205	ENST00000533436		TCGA	RV	SARC	TCGA-FX-A3TO-01A	RTN4RL2	chr11	57235563	+	P2RX3	chr11	57135483	+
5CDS-intron	ENST00000533205	ENST00000263314		TCGA	RV	SARC	TCGA-FX-A3TO-01A	RTN4RL2	chr11	57235563	+	P2RX3	chr11	57135483	+
5CDS-intron	ENST00000395120	ENST00000533436		TCGA	RV	SARC	TCGA-FX-A3TO-01A	RTN4RL2	chr11	57235563	+	P2RX3	chr11	57135483	+
5CDS-intron	ENST00000395120	ENST00000263314		TCGA	RV	SARC	TCGA-FX-A3TO-01A	RTN4RL2	chr11	57235563	+	P2RX3	chr11	57135483	+
5UTR-5UTR	ENST00000538941	ENST00000261858		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5UTR-5UTR	ENST00000538941	ENST00000559420		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5UTR-intron	ENST00000538941	ENST00000559500		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5CDS-5UTR	ENST00000563290	ENST00000261858		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5CDS-5UTR	ENST00000563290	ENST00000559420		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5CDS-intron	ENST00000563290	ENST00000559500		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5CDS-5UTR	ENST00000324767	ENST00000261858		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5CDS-5UTR	ENST00000324767	ENST00000559420		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
5CDS-intron	ENST00000324767	ENST00000559500		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
intron-5UTR	ENST00000562890	ENST00000261858		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
intron-5UTR	ENST00000562890	ENST00000559420		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
intron-intron	ENST00000562890	ENST00000559500		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SCAPER	chr15	77092589	-	GLCE	chr15	69548133	+
intron-3CDS	ENST00000456518	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
intron-intron	ENST00000456518	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
In-frame	ENST00000397174	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000397174	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
In-frame	ENST00000402904	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000402904	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
Frame-shit	ENST00000361191	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000361191	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
In-frame	ENST00000397171	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000397171	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
Frame-shit	ENST00000361705	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000361705	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
In-frame	ENST00000326197	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000326197	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
Frame-shit	ENST00000372595	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000372595	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
Frame-shit	ENST00000337495	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000337495	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
In-frame	ENST00000372596	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000372596	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
Frame-shit	ENST00000372597	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-intron	ENST00000372597	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
intron-3CDS	ENST00000472037	ENST00000307602		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
intron-intron	ENST00000472037	ENST00000524839		TCGA	RV	SARC	TCGA-HB-A5W3-01A	SCMH1	chr1	41578955	-	HOOK3	chr8	42761316	+
5CDS-5UTR	ENST00000301761	ENST00000250018		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-5UTR	ENST00000301761	ENST00000341556		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-intron	ENST00000301761	ENST00000525406		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
intron-5UTR	ENST00000542074	ENST00000250018		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
intron-5UTR	ENST00000542074	ENST00000341556		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
intron-intron	ENST00000542074	ENST00000525406		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-5UTR	ENST00000537782	ENST00000250018		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-5UTR	ENST00000537782	ENST00000341556		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-intron	ENST00000537782	ENST00000525406		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
intron-5UTR	ENST00000543265	ENST00000250018		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
intron-5UTR	ENST00000543265	ENST00000341556		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
intron-intron	ENST00000543265	ENST00000525406		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-5UTR	ENST00000534878	ENST00000250018		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-5UTR	ENST00000534878	ENST00000341556		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-intron	ENST00000534878	ENST00000525406		TCGA	RV	SARC	TCGA-X6-A8C3-01A	SDHAF2	chr11	61205585	+	TPH1	chr11	18062335	-
5CDS-5UTR	ENST00000265965	ENST00000380237		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
5CDS-5UTR	ENST00000265965	ENST00000292896		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
5CDS-5UTR	ENST00000528200	ENST00000380237		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
5CDS-5UTR	ENST00000528200	ENST00000292896		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
5CDS-5UTR	ENST00000532265	ENST00000380237		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
5CDS-5UTR	ENST00000532265	ENST00000292896		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
intron-5UTR	ENST00000532212	ENST00000380237		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
intron-5UTR	ENST00000532212	ENST00000292896		TCGA	RV	SARC	TCGA-DX-A1KU-01A	SERGEF	chr11	18010144	-	HBE1	chr11	5291386	-
Frame-shit	ENST00000272542	ENST00000381781		TCGA	RV	SARC	TCGA-DX-A8BK-01A	SLC20A1	chr2	113405315	+	ARRDC5	chr19	4896888	-
intron-3CDS	ENST00000480984	ENST00000381781		TCGA	RV	SARC	TCGA-DX-A8BK-01A	SLC20A1	chr2	113405315	+	ARRDC5	chr19	4896888	-
Frame-shit	ENST00000366618	ENST00000377844		TCGA	RV	SARC	TCGA-PC-A5DK-01A	SLC35F3	chr1	234367487	+	KLHL1	chr13	70371094	-
Frame-shit	ENST00000366618	ENST00000545028		TCGA	RV	SARC	TCGA-PC-A5DK-01A	SLC35F3	chr1	234367487	+	KLHL1	chr13	70371094	-
Frame-shit	ENST00000366617	ENST00000377844		TCGA	RV	SARC	TCGA-PC-A5DK-01A	SLC35F3	chr1	234367487	+	KLHL1	chr13	70371094	-
Frame-shit	ENST00000366617	ENST00000545028		TCGA	RV	SARC	TCGA-PC-A5DK-01A	SLC35F3	chr1	234367487	+	KLHL1	chr13	70371094	-
Frame-shit	ENST00000539888	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000539888	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000535686	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000535686	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000540564	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000540564	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000367619	ENST00000257897		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
Frame-shit	ENST00000367619	ENST00000547588		TCGA	RV	SARC	TCGA-DX-A2J0-01A	SOAT1	chr1	179316832	+	AGAP2	chr12	58129210	-
In-frame	ENST00000393446	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000393446	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000393446	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000265437	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000265437	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000265437	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000393451	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000393451	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000393451	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-3CDS	ENST00000393449	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-5UTR	ENST00000393449	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-intron	ENST00000393449	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000323984	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000323984	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000323984	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000432298	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000432298	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000432298	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000422922	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000422922	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000422922	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-3CDS	ENST00000487459	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-5UTR	ENST00000487459	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-intron	ENST00000487459	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-3CDS	ENST00000393443	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-5UTR	ENST00000393443	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-intron	ENST00000393443	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000393447	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000393447	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000393447	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000393444	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-5UTR	ENST00000393444	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
5CDS-intron	ENST00000393444	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-3CDS	ENST00000465133	ENST00000361727		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-5UTR	ENST00000465133	ENST00000538075		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
intron-intron	ENST00000465133	ENST00000463592		TCGA	RV	SARC	TCGA-DX-AATS-01A	ST7	chr7	116849991	+	CNTNAP2	chr7	147869334	+
In-frame	ENST00000383202	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000383202	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000383202	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000383202	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000383202	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000383202	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000383202	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000236698	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000236698	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
In-frame	ENST00000236698	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000236698	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000236698	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000236698	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000236698	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
Frame-shit	ENST00000434713	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
Frame-shit	ENST00000434713	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
Frame-shit	ENST00000434713	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000434713	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000434713	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-5UTR	ENST00000434713	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000434713	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-3CDS	ENST00000480733	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-3CDS	ENST00000480733	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-3CDS	ENST00000480733	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-5UTR	ENST00000480733	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-5UTR	ENST00000480733	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-5UTR	ENST00000480733	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000480733	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-3CDS	ENST00000536929	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-3CDS	ENST00000536929	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-3CDS	ENST00000536929	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-5UTR	ENST00000536929	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-5UTR	ENST00000536929	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-5UTR	ENST00000536929	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
intron-intron	ENST00000536929	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23Y-01A	STAG1	chr3	136183723	-	ANKS1B	chr12	99548173	-
5CDS-intron	ENST00000218089	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000218089	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000218089	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000218089	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000218089	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000218089	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000218089	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000218089	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000218089	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000218089	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-intron	ENST00000469481	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-5UTR	ENST00000469481	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-intron	ENST00000469481	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-5UTR	ENST00000469481	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-5UTR	ENST00000469481	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-intron	ENST00000469481	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-intron	ENST00000469481	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-5UTR	ENST00000469481	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-5UTR	ENST00000469481	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
intron-5UTR	ENST00000469481	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000354548	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000354548	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000354548	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000354548	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000354548	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000354548	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000354548	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000354548	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000354548	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000354548	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371160	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371160	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371160	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371160	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371160	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371160	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371160	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371160	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371160	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371160	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371157	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371157	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371157	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371157	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371157	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371157	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371157	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371157	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371157	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371157	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371145	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371145	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371145	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371145	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371145	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371145	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371145	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371145	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371145	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371145	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371144	ENST00000519824		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371144	ENST00000522746		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371144	ENST00000523509		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371144	ENST00000401979		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371144	ENST00000519110		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371144	ENST00000522250		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-intron	ENST00000371144	ENST00000517654		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371144	ENST00000519540		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371144	ENST00000522941		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-5UTR	ENST00000371144	ENST00000518879		TCGA	RV	SARC	TCGA-X6-A8C2-01A	STAG2	chrX	123164975	+	FAM49B	chr8	130916831	-
5CDS-3UTR	ENST00000359930	ENST00000371497		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000359930	ENST00000603338		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000359930	ENST00000329613		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000484875	ENST00000371497		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000484875	ENST00000603338		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000484875	ENST00000329613		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000361612	ENST00000371497		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000361612	ENST00000603338		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000361612	ENST00000329613		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000467815	ENST00000371497		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000467815	ENST00000603338		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000467815	ENST00000329613		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000478766	ENST00000371497		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000478766	ENST00000603338		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000478766	ENST00000329613		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SULF2	chr20	46365447	-	TSHZ2	chr20	52103683	+
Frame-shit	ENST00000304363	ENST00000265085		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000304363	ENST00000520867		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000304363	ENST00000334035		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000304363	ENST00000519835		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000304363	ENST00000522336		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000304363	ENST00000517880		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000304363	ENST00000519467		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
Frame-shit	ENST00000401547	ENST00000265085		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000401547	ENST00000520867		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000401547	ENST00000334035		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000401547	ENST00000519835		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000401547	ENST00000522336		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000401547	ENST00000517880		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000401547	ENST00000519467		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
Frame-shit	ENST00000405515	ENST00000265085		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000405515	ENST00000520867		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000405515	ENST00000334035		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000405515	ENST00000519835		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000405515	ENST00000522336		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000405515	ENST00000517880		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000405515	ENST00000519467		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
Frame-shit	ENST00000402789	ENST00000265085		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000402789	ENST00000520867		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000402789	ENST00000334035		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000402789	ENST00000519835		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000402789	ENST00000522336		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000402789	ENST00000517880		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5CDS-intron	ENST00000402789	ENST00000519467		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-3CDS	ENST00000402185	ENST00000265085		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-intron	ENST00000402185	ENST00000520867		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-intron	ENST00000402185	ENST00000334035		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-intron	ENST00000402185	ENST00000519835		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-intron	ENST00000402185	ENST00000522336		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-intron	ENST00000402185	ENST00000517880		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
intron-intron	ENST00000402185	ENST00000519467		TCGA	RV	SARC	TCGA-3B-A9HR-01A	SUV420H1	chr11	67947599	-	CPEB4	chr5	173359453	+
5UTR-5UTR	ENST00000375400	ENST00000376462		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000481700		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000458595		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000376454		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000376452		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000430453		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000307544		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000396446		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000396445		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375400	ENST00000376451		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-5UTR	ENST00000375398	ENST00000376462		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000481700		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000458595		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000376454		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000376452		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000430453		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000307544		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000396446		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000396445		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
5UTR-intron	ENST00000375398	ENST00000376451		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-5UTR	ENST00000355867	ENST00000376462		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000481700		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000458595		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000376454		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000376452		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000430453		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000307544		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000396446		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000396445		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000355867	ENST00000376451		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-5UTR	ENST00000535393	ENST00000376462		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000481700		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000458595		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000376454		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000376452		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000430453		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000307544		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000396446		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000396445		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000535393	ENST00000376451		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-5UTR	ENST00000460007	ENST00000376462		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000481700		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000458595		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000376454		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000376452		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000430453		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000307544		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000396446		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000396445		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000460007	ENST00000376451		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-5UTR	ENST00000538146	ENST00000376462		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000481700		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000458595		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000376454		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000376452		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000430453		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000307544		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000396446		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000396445		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
intron-intron	ENST00000538146	ENST00000376451		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SVIL	chr10	29975482	-	KIAA1217	chr10	24508555	+
In-frame	ENST00000338366	ENST00000316963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TAF13	chr1	109617609	-	LYPLA1	chr8	54967693	-
In-frame	ENST00000338366	ENST00000343231		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TAF13	chr1	109617609	-	LYPLA1	chr8	54967693	-
5CDS-intron	ENST00000338366	ENST00000522007		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TAF13	chr1	109617609	-	LYPLA1	chr8	54967693	-
5CDS-5UTR	ENST00000338366	ENST00000519926		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TAF13	chr1	109617609	-	LYPLA1	chr8	54967693	-
5UTR-3CDS	ENST00000358409	ENST00000543086		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000358409	ENST00000546231		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000358409	ENST00000397203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000358409	ENST00000360905		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000358409	ENST00000589028		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000358409	ENST00000355446		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-intron	ENST00000358409	ENST00000536573		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000359864	ENST00000543086		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000359864	ENST00000546231		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000359864	ENST00000397203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000359864	ENST00000360905		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000359864	ENST00000589028		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000359864	ENST00000355446		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-intron	ENST00000359864	ENST00000536573		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000397122	ENST00000543086		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000397122	ENST00000546231		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000397122	ENST00000397203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000397122	ENST00000360905		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000397122	ENST00000589028		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-3CDS	ENST00000397122	ENST00000355446		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
5UTR-intron	ENST00000397122	ENST00000536573		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069206	+	ERC1	chr12	1553728	+
Frame-shit	ENST00000308086	ENST00000405493		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000308086	ENST00000449771		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000308086	ENST00000549151		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000308086	ENST00000389212		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000308086	ENST00000171000		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000308086	ENST00000548919		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000308086	ENST00000395358		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
5CDS-intron	ENST00000308086	ENST00000549347		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000405493		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000449771		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000549151		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000389212		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000171000		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000548919		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
Frame-shit	ENST00000547843	ENST00000395358		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
5CDS-intron	ENST00000547843	ENST00000549347		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	RAPGEF3	chr12	48145752	-
intron-3CDS	ENST00000450333	ENST00000270538		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
intron-intron	ENST00000450333	ENST00000598968		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
Frame-shit	ENST00000162044	ENST00000270538		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
5CDS-intron	ENST00000162044	ENST00000598968		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
Frame-shit	ENST00000587583	ENST00000270538		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
5CDS-intron	ENST00000587583	ENST00000598968		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
intron-3CDS	ENST00000592147	ENST00000270538		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
intron-intron	ENST00000592147	ENST00000598968		TCGA	RV	SARC	TCGA-DX-A8BL-01A	TMEM161A	chr19	19240965	-	TIMM44	chr19	8000030	-
Frame-shit	ENST00000321196	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000321196	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000321196	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000321196	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
5CDS-5UTR	ENST00000321196	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000548305	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000548305	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000548305	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000548305	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
5CDS-5UTR	ENST00000548305	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000549919	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000549919	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000549919	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000549919	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
5CDS-5UTR	ENST00000549919	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC2	chr12	83290425	+	BTBD11	chr12	108029062	+
Frame-shit	ENST00000321196	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000321196	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000321196	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000321196	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000321196	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000321196	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000548305	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000548305	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000548305	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000548305	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000548305	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000548305	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
intron-3CDS	ENST00000549919	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000549919	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000549919	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000549919	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000549919	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000549919	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	PTPRR	chr12	71286757	-
Frame-shit	ENST00000311160	ENST00000258774		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
5CDS-5UTR	ENST00000311160	ENST00000432325		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
Frame-shit	ENST00000355730	ENST00000258774		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
5CDS-5UTR	ENST00000355730	ENST00000432325		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
Frame-shit	ENST00000398879	ENST00000258774		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
5CDS-5UTR	ENST00000398879	ENST00000432325		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000442536	ENST00000258774		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000442536	ENST00000432325		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000458317	ENST00000258774		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000458317	ENST00000432325		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
intron-3CDS	ENST00000474346	ENST00000258774		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
intron-5UTR	ENST00000474346	ENST00000432325		TCGA	RV	SARC	TCGA-IE-A4EH-01A	TNS3	chr7	47384353	-	HUS1	chr7	48018413	-
Frame-shit	ENST00000261180	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000261180	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
5CDS-intron	ENST00000261180	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000547776		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000329257		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000547010		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000341752		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000549558		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000550693		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000549025		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000549493		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000547446		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000333732		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000546568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000332712		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-3CDS	ENST00000549138	ENST00000546960		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
3UTR-intron	ENST00000549138	ENST00000550833		TCGA	RV	SARC	TCGA-DX-A23V-01A	TRHDE	chr12	72956820	+	ANKS1B	chr12	99145300	-
In-frame	ENST00000333213	ENST00000409678		TCGA	RV	SARC	TCGA-QC-A6FX-01A	TSEN54	chr17	73515128	+	NOTUM	chr17	79916269	-
3UTR-3CDS	ENST00000580013	ENST00000409678		TCGA	RV	SARC	TCGA-QC-A6FX-01A	TSEN54	chr17	73515128	+	NOTUM	chr17	79916269	-
5UTR-5UTR	ENST00000537971	ENST00000296978		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000537971	ENST00000545622		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000537971	ENST00000392429		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000011898	ENST00000296978		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000011898	ENST00000545622		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
5UTR-5UTR	ENST00000011898	ENST00000392429		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000407263	ENST00000296978		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000407263	ENST00000545622		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000407263	ENST00000392429		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000492305	ENST00000296978		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000492305	ENST00000545622		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000492305	ENST00000392429		TCGA	RV	SARC	TCGA-JV-A5VF-01A	TSPAN9	chr12	3186619	+	TMEM200A	chr6	130761552	+
intron-3CDS	ENST00000355621	ENST00000342310		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-3CDS	ENST00000355621	ENST00000294816		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-3CDS	ENST00000355621	ENST00000367893		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-intron	ENST00000355621	ENST00000489443		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-3CDS	ENST00000473814	ENST00000342310		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-3CDS	ENST00000473814	ENST00000294816		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-3CDS	ENST00000473814	ENST00000367893		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
intron-intron	ENST00000473814	ENST00000489443		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UBE2H	chr7	129588799	-	LMX1A	chr1	165183050	-
In-frame	ENST00000324849	ENST00000371026		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324849	ENST00000431318		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324849	ENST00000371023		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324849	ENST00000371022		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000324849	ENST00000488333		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000324849	ENST00000493572		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324815	ENST00000371026		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324815	ENST00000431318		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324815	ENST00000371023		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000324815	ENST00000371022		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000324815	ENST00000488333		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000324815	ENST00000493572		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521829	ENST00000371026		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521829	ENST00000431318		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521829	ENST00000371023		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521829	ENST00000371022		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000521829	ENST00000488333		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000521829	ENST00000493572		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521005	ENST00000371026		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521005	ENST00000431318		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521005	ENST00000371023		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
In-frame	ENST00000521005	ENST00000371022		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000521005	ENST00000488333		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
5CDS-intron	ENST00000521005	ENST00000493572		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-3CDS	ENST00000521162	ENST00000371026		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-3CDS	ENST00000521162	ENST00000431318		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-3CDS	ENST00000521162	ENST00000371023		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-3CDS	ENST00000521162	ENST00000371022		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-intron	ENST00000521162	ENST00000488333		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-intron	ENST00000521162	ENST00000493572		TCGA	RV	SARC	TCGA-DX-AB2O-01A	VPS37A	chr8	17104878	+	WDR78	chr1	67337192	-
intron-intron	ENST00000388999	ENST00000585876		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
intron-5UTR	ENST00000388999	ENST00000588831		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
intron-5UTR	ENST00000388999	ENST00000246529		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
5CDS-intron	ENST00000401500	ENST00000585876		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
5CDS-5UTR	ENST00000401500	ENST00000588831		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
5CDS-5UTR	ENST00000401500	ENST00000246529		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
5CDS-intron	ENST00000270301	ENST00000585876		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
5CDS-5UTR	ENST00000270301	ENST00000588831		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
5CDS-5UTR	ENST00000270301	ENST00000246529		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
intron-intron	ENST00000378860	ENST00000585876		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
intron-5UTR	ENST00000378860	ENST00000588831		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
intron-5UTR	ENST00000378860	ENST00000246529		TCGA	RV	SARC	TCGA-DX-A3UC-01A	WDR62	chr19	36574143	+	LRFN3	chr19	36430312	+
In-frame	ENST00000549091	ENST00000389567		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
5CDS-intron	ENST00000549091	ENST00000289135		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
5CDS-3UTR	ENST00000549091	ENST00000460133		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
In-frame	ENST00000293879	ENST00000389567		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
5CDS-intron	ENST00000293879	ENST00000289135		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
5CDS-3UTR	ENST00000293879	ENST00000460133		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-3CDS	ENST00000547543	ENST00000389567		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-intron	ENST00000547543	ENST00000289135		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-3UTR	ENST00000547543	ENST00000460133		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-3CDS	ENST00000547944	ENST00000389567		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-intron	ENST00000547944	ENST00000289135		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-3UTR	ENST00000547944	ENST00000460133		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-3CDS	ENST00000315764	ENST00000389567		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-intron	ENST00000315764	ENST00000289135		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
intron-3UTR	ENST00000315764	ENST00000460133		TCGA	RV	SARC	TCGA-DX-A8BS-01A	WDR90	chr16	712331	+	ESYT3	chr3	138195065	+
3UTR-3CDS	ENST00000494757	ENST00000312513		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	WIPF2	chr17	38433436	+	MRPL45	chr17	36476502	+
Frame-shit	ENST00000323571	ENST00000312513		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	WIPF2	chr17	38433436	+	MRPL45	chr17	36476502	+
Frame-shit	ENST00000585043	ENST00000312513		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	WIPF2	chr17	38433436	+	MRPL45	chr17	36476502	+
Frame-shit	ENST00000394103	ENST00000312513		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	WIPF2	chr17	38433436	+	MRPL45	chr17	36476502	+
Frame-shit	ENST00000536600	ENST00000312513		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	WIPF2	chr17	38433436	+	MRPL45	chr17	36476502	+
Frame-shit	ENST00000583130	ENST00000312513		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	WIPF2	chr17	38433436	+	MRPL45	chr17	36476502	+
5CDS-intron	ENST00000400602	ENST00000438807		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000221943		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000592922		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000301183		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000589970		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000417807		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000590641		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000597457		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000400602	ENST00000595425		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000438807		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000221943		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000592922		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000301183		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000589970		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000417807		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000590641		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000597457		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
5CDS-intron	ENST00000255305	ENST00000595425		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000438807		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000221943		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000592922		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000301183		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000589970		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000417807		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000590641		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000597457		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
intron-intron	ENST00000490513	ENST00000595425		TCGA	RV	SARC	TCGA-IE-A4EH-01A	XPO4	chr13	21381596	-	ATP5SL	chr19	41985192	-
In-frame	ENST00000377191	ENST00000255006		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
In-frame	ENST00000377191	ENST00000440354		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
5CDS-intron	ENST00000377191	ENST00000484638		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
5UTR-3CDS	ENST00000430571	ENST00000255006		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
5UTR-3CDS	ENST00000430571	ENST00000440354		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
5UTR-intron	ENST00000430571	ENST00000484638		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
intron-3CDS	ENST00000539513	ENST00000255006		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
intron-3CDS	ENST00000539513	ENST00000440354		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
intron-intron	ENST00000539513	ENST00000484638		TCGA	RV	SARC	TCGA-DX-A6B8-01A	XRN2	chr20	21284111	+	RIN2	chr20	19915743	+
intron-3CDS	ENST00000469100	ENST00000358602		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
intron-3CDS	ENST00000469100	ENST00000509867		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
intron-3CDS	ENST00000469100	ENST00000330838		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
intron-intron	ENST00000469100	ENST00000514252		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
Frame-shit	ENST00000373477	ENST00000358602		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
Frame-shit	ENST00000373477	ENST00000509867		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
Frame-shit	ENST00000373477	ENST00000330838		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
5CDS-intron	ENST00000373477	ENST00000514252		TCGA	RV	SARC	TCGA-DX-A48P-01A	YARS	chr1	33263364	-	ANKRD17	chr4	73944607	-
5UTR-3CDS	ENST00000462705	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000462705	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000462705	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-intron	ENST00000462705	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000393785	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000393785	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000393785	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-intron	ENST00000393785	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000481632	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000481632	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000481632	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-intron	ENST00000481632	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000471418	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000471418	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000471418	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-intron	ENST00000471418	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000357258	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000357258	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000357258	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-intron	ENST00000357258	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000464560	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000464560	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000464560	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
5UTR-intron	ENST00000464560	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000488663	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000488663	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000488663	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-intron	ENST00000488663	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000474710	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000474710	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000474710	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
intron-intron	ENST00000474710	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB37-01A	ZBTB20	chr3	114219199	-	CPM	chr12	69252851	-
In-frame	ENST00000357206	ENST00000371522		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000357206	ENST00000358358		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000357206	ENST00000536120		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000357206	ENST00000541281		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000357206	ENST00000480312		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000287727	ENST00000371522		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000287727	ENST00000358358		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000287727	ENST00000536120		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000287727	ENST00000541281		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000287727	ENST00000480312		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371591	ENST00000371522		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371591	ENST00000358358		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
In-frame	ENST00000371591	ENST00000536120		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371591	ENST00000541281		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
5CDS-intron	ENST00000371591	ENST00000480312		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
3UTR-3CDS	ENST00000469134	ENST00000371522		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
3UTR-3CDS	ENST00000469134	ENST00000358358		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
3UTR-3CDS	ENST00000469134	ENST00000536120		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
3UTR-intron	ENST00000469134	ENST00000541281		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
3UTR-intron	ENST00000469134	ENST00000480312		TCGA	RV	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52769597	+	ECHDC2	chr1	53364896	-
intron-3CDS	ENST00000446085	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000446085	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000446085	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000541595	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000541595	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000541595	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000602738	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000602738	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000602738	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000605471	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000605471	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000605471	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000602856	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000602856	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000602856	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
5UTR-3CDS	ENST00000343499	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
5UTR-intron	ENST00000343499	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
5UTR-intron	ENST00000343499	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000589262	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000589262	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000589262	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000434737	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000434737	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000434737	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-3CDS	ENST00000590616	ENST00000380456		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000590616	ENST00000568628		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-intron	ENST00000590616	ENST00000393423		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	ZNF177	chr19	9473760	+	RGL3	chr19	11517540	-
intron-5UTR	ENST00000585441	ENST00000389934		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
intron-5UTR	ENST00000585441	ENST00000349033		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
intron-5UTR	ENST00000585441	ENST00000240361		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
intron-intron	ENST00000585441	ENST00000584699		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000590503	ENST00000389934		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000590503	ENST00000349033		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000590503	ENST00000240361		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-intron	ENST00000590503	ENST00000584699		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000589413	ENST00000389934		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000589413	ENST00000349033		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000589413	ENST00000240361		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-intron	ENST00000589413	ENST00000584699		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000352998	ENST00000389934		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000352998	ENST00000349033		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-5UTR	ENST00000352998	ENST00000240361		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
5CDS-intron	ENST00000352998	ENST00000584699		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF383	chr19	37726976	+	TEX14	chr17	56729363	-
Frame-shit	ENST00000282296	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000282296	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
Frame-shit	ENST00000356715	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000356715	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
intron-3CDS	ENST00000599402	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
intron-3UTR	ENST00000599402	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
Frame-shit	ENST00000596085	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000596085	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF551	chr19	58196753	+	AATF	chr17	35413901	+
5CDS-5UTR	ENST00000308650	ENST00000466380		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
5CDS-5UTR	ENST00000308650	ENST00000393716		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
5CDS-5UTR	ENST00000308650	ENST00000337940		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
5CDS-5UTR	ENST00000591998	ENST00000466380		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
5CDS-5UTR	ENST00000591998	ENST00000393716		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
5CDS-5UTR	ENST00000591998	ENST00000337940		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
intron-5UTR	ENST00000588336	ENST00000466380		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
intron-5UTR	ENST00000588336	ENST00000393716		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
intron-5UTR	ENST00000588336	ENST00000337940		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ZNF699	chr19	9407972	-	NR1I2	chr3	119526076	+
Frame-shit	ENST00000257897	ENST00000373025		TCGA	RV	SARC	TCGA-DX-A23T-01A	AGAP2	chr12	58129152	-	PGC	chr6	41704742	-
5CDS-intron	ENST00000257897	ENST00000425343		TCGA	RV	SARC	TCGA-DX-A23T-01A	AGAP2	chr12	58129152	-	PGC	chr6	41704742	-
Frame-shit	ENST00000547588	ENST00000373025		TCGA	RV	SARC	TCGA-DX-A23T-01A	AGAP2	chr12	58129152	-	PGC	chr6	41704742	-
5CDS-intron	ENST00000547588	ENST00000425343		TCGA	RV	SARC	TCGA-DX-A23T-01A	AGAP2	chr12	58129152	-	PGC	chr6	41704742	-
5UTR-3CDS	ENST00000337006	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000337006	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000337006	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000337006	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000337006	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-intron	ENST00000337006	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376083	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376083	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376083	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376083	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376083	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-intron	ENST00000376083	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000357081	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000357081	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000357081	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000357081	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000357081	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-intron	ENST00000357081	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
Frame-shit	ENST00000376109	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
Frame-shit	ENST00000376109	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
Frame-shit	ENST00000376109	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
Frame-shit	ENST00000376109	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
Frame-shit	ENST00000376109	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5CDS-intron	ENST00000376109	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000432218	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000432218	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000432218	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000432218	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000432218	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-intron	ENST00000432218	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376081	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376081	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376081	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376081	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-3CDS	ENST00000376081	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
5UTR-intron	ENST00000376081	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000491784	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000491784	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000491784	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000491784	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000491784	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-intron	ENST00000491784	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000376080	ENST00000358077		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000376080	ENST00000472284		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000376080	ENST00000469640		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000376080	ENST00000408954		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-3CDS	ENST00000376080	ENST00000491893		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-intron	ENST00000376080	ENST00000466188		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AGTPBP1	chr9	88356690	-	DAPK1	chr9	90252858	+
intron-5UTR	ENST00000510514	ENST00000337006		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000510514	ENST00000376083		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000510514	ENST00000357081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000510514	ENST00000376109		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000510514	ENST00000432218		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000510514	ENST00000376081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000510514	ENST00000491784		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000510514	ENST00000376080		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000555236	ENST00000337006		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000555236	ENST00000376083		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000555236	ENST00000357081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000555236	ENST00000376109		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000555236	ENST00000432218		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000555236	ENST00000376081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000555236	ENST00000491784		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000555236	ENST00000376080		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000434623	ENST00000337006		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000434623	ENST00000376083		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000434623	ENST00000357081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000434623	ENST00000376109		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000434623	ENST00000432218		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000434623	ENST00000376081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000434623	ENST00000491784		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000434623	ENST00000376080		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000374525	ENST00000337006		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000374525	ENST00000376083		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000374525	ENST00000357081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000374525	ENST00000376109		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000374525	ENST00000432218		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-5UTR	ENST00000374525	ENST00000376081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000374525	ENST00000491784		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
5CDS-intron	ENST00000374525	ENST00000376080		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000259318	ENST00000337006		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000259318	ENST00000376083		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000259318	ENST00000357081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000259318	ENST00000376109		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000259318	ENST00000432218		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000259318	ENST00000376081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000259318	ENST00000491784		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000259318	ENST00000376080		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000482335	ENST00000337006		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000482335	ENST00000376083		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000482335	ENST00000357081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000482335	ENST00000376109		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000482335	ENST00000432218		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-5UTR	ENST00000482335	ENST00000376081		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000482335	ENST00000491784		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
intron-intron	ENST00000482335	ENST00000376080		TCGA	RV	SARC	TCGA-K1-A6RU-01A	AKAP2	chr9	112811135	+	AGTPBP1	chr9	88327481	-
Frame-shit	ENST00000290649	ENST00000219207		TCGA	RV	SARC	TCGA-HS-A5N7-01A	AMFR	chr16	56435645	-	PLLP	chr16	57295982	-
5CDS-intron	ENST00000290649	ENST00000569059		TCGA	RV	SARC	TCGA-HS-A5N7-01A	AMFR	chr16	56435645	-	PLLP	chr16	57295982	-
intron-3CDS	ENST00000564283	ENST00000219207		TCGA	RV	SARC	TCGA-HS-A5N7-01A	AMFR	chr16	56435645	-	PLLP	chr16	57295982	-
intron-intron	ENST00000564283	ENST00000569059		TCGA	RV	SARC	TCGA-HS-A5N7-01A	AMFR	chr16	56435645	-	PLLP	chr16	57295982	-
In-frame	ENST00000370944	ENST00000370931		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000370932		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000351052		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000460330		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000354608		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000356595		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000414819		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000306666		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000370944	ENST00000370924		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
In-frame	ENST00000262346	ENST00000370931		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000370932		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000351052		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000460330		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000354608		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000356595		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000414819		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000306666		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
5CDS-intron	ENST00000262346	ENST00000370924		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-3CDS	ENST00000464236	ENST00000370931		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000370932		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000351052		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000460330		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000354608		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000356595		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000414819		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000306666		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
intron-intron	ENST00000464236	ENST00000370924		TCGA	RV	SARC	TCGA-MB-A5Y8-01A	ANKRD13C	chr1	70766447	-	PTGER3	chr1	71440071	-
Frame-shit	ENST00000291439	ENST00000329875		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000291439	ENST00000337943		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000291439	ENST00000403172		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000291439	ENST00000577756		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000291439	ENST00000402252		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000541844	ENST00000329875		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000541844	ENST00000337943		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000541844	ENST00000403172		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000541844	ENST00000577756		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000541844	ENST00000402252		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000590756	ENST00000329875		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000590756	ENST00000337943		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000590756	ENST00000403172		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000590756	ENST00000577756		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000590756	ENST00000402252		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000429941	ENST00000329875		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000429941	ENST00000337943		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000429941	ENST00000403172		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000429941	ENST00000577756		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000429941	ENST00000402252		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000444449	ENST00000329875		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000444449	ENST00000337943		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000444449	ENST00000403172		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000444449	ENST00000577756		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
Frame-shit	ENST00000444449	ENST00000402252		TCGA	RV	SARC	TCGA-DX-A6B9-01A	AP1M1	chr19	16319988	+	PYCR1	chr17	79894069	-
5UTR-5UTR	ENST00000502271	ENST00000514342		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-5UTR	ENST00000502271	ENST00000505697		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-3UTR	ENST00000502271	ENST00000511363		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-3UTR	ENST00000502271	ENST00000503750		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-3UTR	ENST00000502271	ENST00000281631		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-3UTR	ENST00000502271	ENST00000514067		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-3UTR	ENST00000502271	ENST00000505554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-intron	ENST00000502271	ENST00000513738		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5UTR-intron	ENST00000502271	ENST00000503665		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-5UTR	ENST00000504924	ENST00000514342		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-5UTR	ENST00000504924	ENST00000505697		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000504924	ENST00000511363		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000504924	ENST00000503750		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000504924	ENST00000281631		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000504924	ENST00000514067		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000504924	ENST00000505554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-intron	ENST00000504924	ENST00000513738		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-intron	ENST00000504924	ENST00000503665		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-5UTR	ENST00000510591	ENST00000514342		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-5UTR	ENST00000510591	ENST00000505697		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-3UTR	ENST00000510591	ENST00000511363		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-3UTR	ENST00000510591	ENST00000503750		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-3UTR	ENST00000510591	ENST00000281631		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-3UTR	ENST00000510591	ENST00000514067		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-3UTR	ENST00000510591	ENST00000505554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-intron	ENST00000510591	ENST00000513738		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
intron-intron	ENST00000510591	ENST00000503665		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-5UTR	ENST00000507646	ENST00000514342		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-5UTR	ENST00000507646	ENST00000505697		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000507646	ENST00000511363		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000507646	ENST00000503750		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000507646	ENST00000281631		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000507646	ENST00000514067		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-3UTR	ENST00000507646	ENST00000505554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-intron	ENST00000507646	ENST00000513738		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
5CDS-intron	ENST00000507646	ENST00000503665		TCGA	RV	SARC	TCGA-DX-A1KX-01A	ARL15	chr5	53606262	-	PARP8	chr5	50045985	+
In-frame	ENST00000373344	ENST00000253577		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
In-frame	ENST00000373344	ENST00000339447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
In-frame	ENST00000373344	ENST00000373394		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
5CDS-intron	ENST00000373344	ENST00000534570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
In-frame	ENST00000395603	ENST00000253577		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
In-frame	ENST00000395603	ENST00000339447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
In-frame	ENST00000395603	ENST00000373394		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
5CDS-intron	ENST00000395603	ENST00000534570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
5UTR-3CDS	ENST00000480283	ENST00000253577		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
5UTR-3CDS	ENST00000480283	ENST00000339447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
5UTR-3CDS	ENST00000480283	ENST00000373394		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
5UTR-intron	ENST00000480283	ENST00000534570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
intron-3CDS	ENST00000373341	ENST00000253577		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
intron-3CDS	ENST00000373341	ENST00000339447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
intron-3CDS	ENST00000373341	ENST00000373394		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
intron-intron	ENST00000373341	ENST00000534570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041468	-	ABCB7	chrX	74334669	-
In-frame	ENST00000331471	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000331471	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000331471	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000331471	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000331471	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000331471	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
Frame-shit	ENST00000488961	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000488961	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000488961	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000488961	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000488961	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000488961	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
In-frame	ENST00000330891	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000330891	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000330891	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000330891	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000330891	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000330891	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
In-frame	ENST00000553096	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000553096	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000553096	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000553096	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000553096	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000553096	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
In-frame	ENST00000476098	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000476098	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000476098	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000476098	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000476098	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000476098	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000266661	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000266661	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000266661	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000266661	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000266661	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000266661	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000551160	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551160	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551160	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551160	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551160	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000551160	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000393365	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000393365	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000393365	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000393365	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000393365	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000393365	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000533674	ENST00000283228		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000533674	ENST00000440835		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000533674	ENST00000537619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000533674	ENST00000378778		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000533674	ENST00000342084		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000533674	ENST00000549308		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70065208	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000357641	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
5UTR-intron	ENST00000357641	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
5UTR-3CDS	ENST00000339717	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
5UTR-intron	ENST00000339717	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
5UTR-3CDS	ENST00000534694	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
5UTR-intron	ENST00000534694	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
intron-3CDS	ENST00000543502	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
intron-intron	ENST00000543502	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
intron-3CDS	ENST00000443324	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
intron-intron	ENST00000443324	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
intron-3CDS	ENST00000534400	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
intron-intron	ENST00000534400	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BRPF3	chr6	36164747	+	UNC119B	chr12	121157723	+
Frame-shit	ENST00000543942	ENST00000258530		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
Frame-shit	ENST00000543942	ENST00000539978		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
5CDS-intron	ENST00000543942	ENST00000546731		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
5CDS-intron	ENST00000543942	ENST00000551662		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
5CDS-5UTR	ENST00000543942	ENST00000549573		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
Frame-shit	ENST00000333722	ENST00000258530		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
Frame-shit	ENST00000333722	ENST00000539978		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
5CDS-intron	ENST00000333722	ENST00000546731		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
5CDS-intron	ENST00000333722	ENST00000551662		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
5CDS-5UTR	ENST00000333722	ENST00000549573		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
intron-3CDS	ENST00000536975	ENST00000258530		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
intron-3CDS	ENST00000536975	ENST00000539978		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
intron-intron	ENST00000536975	ENST00000546731		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
intron-intron	ENST00000536975	ENST00000551662		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
intron-5UTR	ENST00000536975	ENST00000549573		TCGA	RV	SARC	TCGA-DX-A3M1-01A	C12orf56	chr12	64784094	-	APPL2	chr12	105593309	-
intron-3CDS	ENST00000296449	ENST00000344721		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000296449	ENST00000355292		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000296449	ENST00000358102		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000296449	ENST00000512865		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000296449	ENST00000511528		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000296449	ENST00000503313		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000438782	ENST00000344721		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000438782	ENST00000355292		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000438782	ENST00000358102		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000438782	ENST00000512865		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000438782	ENST00000511528		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000438782	ENST00000503313		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000452691	ENST00000344721		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000452691	ENST00000355292		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000452691	ENST00000358102		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000452691	ENST00000512865		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000452691	ENST00000511528		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-5UTR	ENST00000452691	ENST00000503313		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000366429	ENST00000344721		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000366429	ENST00000355292		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000366429	ENST00000358102		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000366429	ENST00000512865		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000366429	ENST00000511528		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-5UTR	ENST00000366429	ENST00000503313		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000451634	ENST00000344721		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000451634	ENST00000355292		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000451634	ENST00000358102		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000451634	ENST00000512865		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000451634	ENST00000511528		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000451634	ENST00000503313		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000493870	ENST00000344721		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000493870	ENST00000355292		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000493870	ENST00000358102		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000493870	ENST00000512865		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-3CDS	ENST00000493870	ENST00000511528		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
intron-5UTR	ENST00000493870	ENST00000503313		TCGA	RV	SARC	TCGA-SG-A6Z4-01A	CCDC36	chr3	49237006	+	NR3C2	chr4	149116013	-
5UTR-3CDS	ENST00000504376	ENST00000424784		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000504376	ENST00000503758		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000504376	ENST00000283441		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000504376	ENST00000511539		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-3CDS	ENST00000382254	ENST00000424784		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000382254	ENST00000503758		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000382254	ENST00000283441		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000382254	ENST00000511539		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-3CDS	ENST00000522262	ENST00000424784		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000522262	ENST00000503758		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000522262	ENST00000283441		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000522262	ENST00000511539		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
intron-3CDS	ENST00000521384	ENST00000424784		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000521384	ENST00000503758		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000521384	ENST00000283441		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
intron-intron	ENST00000521384	ENST00000511539		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CDH12	chr5	22212607	-	ZDHHC11	chr5	825366	-
5CDS-3UTR	ENST00000468888	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5CDS-3UTR	ENST00000468888	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5CDS-3UTR	ENST00000399362	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5CDS-3UTR	ENST00000399362	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000539981	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000539981	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5CDS-3UTR	ENST00000359576	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5CDS-3UTR	ENST00000359576	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000307312	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000307312	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000480013	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000480013	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000461133	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000461133	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000313350	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000313350	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000487200	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000487200	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000333778	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000333778	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000482896	ENST00000453168		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000482896	ENST00000295770		TCGA	RV	SARC	TCGA-LI-A9QH-01A	CLASP2	chr3	33725851	-	STT3B	chr3	31617888	+
Frame-shit	ENST00000546373	ENST00000358155		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000546373	ENST00000367733		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000546373	ENST00000355305		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000546373	ENST00000367731		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000546373	ENST00000520906		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
Frame-shit	ENST00000551568	ENST00000358155		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000551568	ENST00000367733		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000551568	ENST00000355305		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000551568	ENST00000367731		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000551568	ENST00000520906		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
Frame-shit	ENST00000338356	ENST00000358155		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000338356	ENST00000367733		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000338356	ENST00000355305		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000338356	ENST00000367731		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
5CDS-intron	ENST00000338356	ENST00000520906		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
intron-3CDS	ENST00000549691	ENST00000358155		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
intron-intron	ENST00000549691	ENST00000367733		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
intron-intron	ENST00000549691	ENST00000355305		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
intron-intron	ENST00000549691	ENST00000367731		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
intron-intron	ENST00000549691	ENST00000520906		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	CPM	chr12	69326458	-	DNM3	chr1	172277868	+
3UTR-5UTR	ENST00000435070	ENST00000408952		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000435070	ENST00000400809		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000435070	ENST00000505849		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-intron	ENST00000435070	ENST00000408918		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000456847	ENST00000408952		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000456847	ENST00000400809		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000456847	ENST00000505849		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-intron	ENST00000456847	ENST00000408918		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000266679	ENST00000408952		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000266679	ENST00000400809		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-5UTR	ENST00000266679	ENST00000505849		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
3UTR-intron	ENST00000266679	ENST00000408918		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-5UTR	ENST00000550987	ENST00000408952		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-5UTR	ENST00000550987	ENST00000400809		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-5UTR	ENST00000550987	ENST00000505849		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
intron-intron	ENST00000550987	ENST00000408918		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-5UTR	ENST00000551516	ENST00000408952		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-5UTR	ENST00000551516	ENST00000400809		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-5UTR	ENST00000551516	ENST00000505849		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
5CDS-intron	ENST00000551516	ENST00000408918		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CPSF6	chr12	69656342	+	CCNL2	chr1	1326245	-
Frame-shit	ENST00000298248	ENST00000398307		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CRYL1	chr13	21099893	-	MLNR	chr13	49796176	+
In-frame	ENST00000298248	ENST00000218721		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CRYL1	chr13	21099893	-	MLNR	chr13	49796176	+
5UTR-3CDS	ENST00000382812	ENST00000398307		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CRYL1	chr13	21099893	-	MLNR	chr13	49796176	+
5UTR-3CDS	ENST00000382812	ENST00000218721		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CRYL1	chr13	21099893	-	MLNR	chr13	49796176	+
intron-3CDS	ENST00000480748	ENST00000398307		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CRYL1	chr13	21099893	-	MLNR	chr13	49796176	+
intron-3CDS	ENST00000480748	ENST00000218721		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CRYL1	chr13	21099893	-	MLNR	chr13	49796176	+
In-frame	ENST00000343508	ENST00000286355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
In-frame	ENST00000343508	ENST00000377928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
Frame-shit	ENST00000297405	ENST00000286355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
Frame-shit	ENST00000297405	ENST00000377928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
Frame-shit	ENST00000455883	ENST00000286355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
Frame-shit	ENST00000455883	ENST00000377928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
Frame-shit	ENST00000352409	ENST00000286355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
Frame-shit	ENST00000352409	ENST00000377928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
intron-3CDS	ENST00000519485	ENST00000286355		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
intron-3CDS	ENST00000519485	ENST00000377928		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CSMD3	chr8	114290821	-	ADCY8	chr8	131964244	-
5CDS-intron	ENST00000301180	ENST00000413953		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-intron	ENST00000301180	ENST00000347140		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-intron	ENST00000301180	ENST00000358907		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-intron	ENST00000301180	ENST00000402412		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-intron	ENST00000301180	ENST00000441731		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-intron	ENST00000301180	ENST00000403821		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-intron	ENST00000301180	ENST00000546843		TCGA	RV	SARC	TCGA-DX-AB2G-01A	DIP2B	chr12	51054102	+	R3HDM2	chr12	57693261	-
5CDS-3UTR	ENST00000358155	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A1L3-01A	DNM3	chr1	171890961	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000367733	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A1L3-01A	DNM3	chr1	171890961	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000355305	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A1L3-01A	DNM3	chr1	171890961	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000367731	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A1L3-01A	DNM3	chr1	171890961	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000520906	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A1L3-01A	DNM3	chr1	171890961	+	UHRF1	chr19	4941540	+
Frame-shit	ENST00000378891	ENST00000449969		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378891	ENST00000288766		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378891	ENST00000378488		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378891	ENST00000419816		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378891	ENST00000378486		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378888	ENST00000449969		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378888	ENST00000288766		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378888	ENST00000378488		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378888	ENST00000419816		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
Frame-shit	ENST00000378888	ENST00000378486		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DVL1	chr1	1273357	-	PLCH2	chr1	2433551	+
In-frame	ENST00000442713	ENST00000398545		TCGA	RV	SARC	TCGA-DX-A8BG-01A	DYM	chr18	46623772	-	CCDC11	chr18	47753979	-
In-frame	ENST00000269445	ENST00000398545		TCGA	RV	SARC	TCGA-DX-A8BG-01A	DYM	chr18	46623772	-	CCDC11	chr18	47753979	-
intron-3CDS	ENST00000584977	ENST00000398545		TCGA	RV	SARC	TCGA-DX-A8BG-01A	DYM	chr18	46623772	-	CCDC11	chr18	47753979	-
intron-3CDS	ENST00000578396	ENST00000398545		TCGA	RV	SARC	TCGA-DX-A8BG-01A	DYM	chr18	46623772	-	CCDC11	chr18	47753979	-
5UTR-3CDS	ENST00000480912	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-3CDS	ENST00000480912	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5UTR-intron	ENST00000480912	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000395728	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000395728	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000395728	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000375528	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000375528	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375528	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000375530	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000375530	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375530	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000375537	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000375537	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
5CDS-intron	ENST00000375537	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000498185	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000498185	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000498185	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000415323	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000415323	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000415323	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000450323	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000450323	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450323	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000440987	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000440987	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000440987	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000421926	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000421926	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000421926	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000551865	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000551865	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000551865	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000497104	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000497104	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497104	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000436403	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000436403	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000436403	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000443951	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000443951	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000443951	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000420874	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000420874	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420874	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000450075	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000450075	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450075	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000552339	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000552339	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000552339	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000497361	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000497361	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000497361	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000420930	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000420930	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420930	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000428442	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000428442	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000428442	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000450229	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000450229	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000450229	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000429506	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000429506	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000429506	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000547244	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000547244	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000547244	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000467139	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000467139	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000467139	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000446303	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000446303	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000446303	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000427405	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000427405	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000427405	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000454705	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000454705	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000454705	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000420336	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000420336	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000420336	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000546877	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000546877	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000546877	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000400006	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000400006	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400006	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000469681	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000469681	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000469681	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000400008	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000400008	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000400008	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000383372	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000383372	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383372	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000383373	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000383373	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000383373	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000550866	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000550866	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000550866	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000425250	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000425250	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000425250	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000487513	ENST00000375203		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-3CDS	ENST00000487513	ENST00000375201		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000468502		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000549095		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000427136		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000439240		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000475964		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000547111		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000293709		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000383156		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000467437		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000553220		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000425571		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000435768		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
intron-intron	ENST00000487513	ENST00000476416		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EHMT2	chr6	31848791	-	ATF6B	chr6	32089125	-
Frame-shit	ENST00000338825	ENST00000265707		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
Frame-shit	ENST00000338825	ENST00000379866		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
5CDS-intron	ENST00000338825	ENST00000520772		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
5CDS-intron	ENST00000338825	ENST00000541111		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
5CDS-3UTR	ENST00000338825	ENST00000523755		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
intron-3CDS	ENST00000520657	ENST00000265707		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
intron-3CDS	ENST00000520657	ENST00000379866		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
intron-intron	ENST00000520657	ENST00000520772		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
intron-intron	ENST00000520657	ENST00000541111		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
intron-3UTR	ENST00000520657	ENST00000523755		TCGA	RV	SARC	TCGA-LI-A67I-01A	EIF4EBP1	chr8	37888236	+	ADAM18	chr8	39564309	+
5UTR-3CDS	ENST00000440973	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
5UTR-3CDS	ENST00000440973	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000338799	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000338799	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000456483	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000456483	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000443427	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000443427	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000206249	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000206249	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000406599	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000406599	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000427531	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000427531	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000482101	ENST00000369208		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
intron-3CDS	ENST00000482101	ENST00000262901		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ESR1	chr6	152023140	+	SIM1	chr6	100841765	-
Frame-shit	ENST00000430479	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000430479	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000430479	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000430479	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000430479	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000399357	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000399357	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000399357	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000399357	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000399357	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000420159	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000420159	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000420159	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000420159	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000420159	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000343495	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000343495	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000343495	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000343495	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000343495	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000242066	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000242066	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000242066	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000242066	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000242066	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405192	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405192	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405192	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405192	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405192	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405358	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405358	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405358	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405358	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405358	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000403527	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000403527	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000403527	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000403527	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000403527	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405218	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405218	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405218	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405218	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
Frame-shit	ENST00000405218	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
In-frame	ENST00000403685	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
In-frame	ENST00000403685	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
In-frame	ENST00000403685	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
In-frame	ENST00000403685	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
In-frame	ENST00000403685	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
5UTR-3CDS	ENST00000476720	ENST00000314100		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
5UTR-3CDS	ENST00000476720	ENST00000481247		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
5UTR-3CDS	ENST00000476720	ENST00000419706		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
5UTR-3CDS	ENST00000476720	ENST00000408958		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
5UTR-3CDS	ENST00000476720	ENST00000403056		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETV1	chr7	13971127	-	BTBD9	chr6	38224292	-
5CDS-5UTR	ENST00000452339	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000452339	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000452339	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000452339	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000452339	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000452339	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000452339	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000452339	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000430974	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000430974	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000430974	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000430974	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000430974	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000430974	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000430974	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000430974	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000367895	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000367895	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000367895	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000367895	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000367895	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000367895	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000367895	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000367895	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000355167	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000355167	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000355167	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000355167	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000355167	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000355167	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000355167	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000355167	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000355286	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000355286	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000355286	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000355286	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000355286	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000355286	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000355286	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000355286	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000531901	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000531901	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000531901	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000531901	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000531901	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000531901	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000531901	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000531901	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000525849	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000525849	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000525849	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000525849	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000525849	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000525849	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000525849	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000525849	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000431403	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000431403	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000431403	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000431403	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-5UTR	ENST00000431403	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000431403	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000431403	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5CDS-intron	ENST00000431403	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000441015	ENST00000392491		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000441015	ENST00000607474		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000441015	ENST00000368452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000441015	ENST00000368448		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-5UTR	ENST00000441015	ENST00000392490		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000441015	ENST00000258014		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000441015	ENST00000354275		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
intron-intron	ENST00000441015	ENST00000368446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EYA4	chr6	133846253	+	PKIB	chr6	122954428	+
5UTR-3CDS	ENST00000416284	ENST00000229214		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
5UTR-3CDS	ENST00000416284	ENST00000438169		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
intron-3CDS	ENST00000551619	ENST00000229214		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
intron-3CDS	ENST00000551619	ENST00000438169		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
intron-3CDS	ENST00000550003	ENST00000229214		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
intron-3CDS	ENST00000550003	ENST00000438169		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
5UTR-3CDS	ENST00000551449	ENST00000229214		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
5UTR-3CDS	ENST00000551449	ENST00000438169		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
intron-3CDS	ENST00000549456	ENST00000229214		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
intron-3CDS	ENST00000549456	ENST00000438169		TCGA	RV	SARC	TCGA-DX-AB35-01A	FAM19A2	chr12	62585040	-	KRR1	chr12	75902226	-
Frame-shit	ENST00000588262	ENST00000012443		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000588262	ENST00000391919		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000252530	ENST00000012443		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000252530	ENST00000391919		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000343358	ENST00000012443		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000343358	ENST00000391919		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
3UTR-3CDS	ENST00000585954	ENST00000012443		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
3UTR-3CDS	ENST00000585954	ENST00000391919		TCGA	RV	SARC	TCGA-X2-A95T-01A	FAM98C	chr19	38894334	+	PPP5C	chr19	46878861	+
5UTR-3CDS	ENST00000299293	ENST00000250572		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000299293	ENST00000381407		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000299293	ENST00000312053		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000299293	ENST00000450315		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000299293	ENST00000381404		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-intron	ENST00000299293	ENST00000601198		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000549921	ENST00000250572		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000549921	ENST00000381407		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000549921	ENST00000312053		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000549921	ENST00000450315		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000549921	ENST00000381404		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-intron	ENST00000549921	ENST00000601198		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000550389	ENST00000250572		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000550389	ENST00000381407		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000550389	ENST00000312053		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000550389	ENST00000450315		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000550389	ENST00000381404		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-intron	ENST00000550389	ENST00000601198		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
intron-3CDS	ENST00000397997	ENST00000250572		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
intron-3CDS	ENST00000397997	ENST00000381407		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
intron-3CDS	ENST00000397997	ENST00000312053		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
intron-3CDS	ENST00000397997	ENST00000450315		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
intron-3CDS	ENST00000397997	ENST00000381404		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
intron-intron	ENST00000397997	ENST00000601198		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69864310	+	EMR1	chr19	6928156	+
5UTR-3CDS	ENST00000299293	ENST00000308330		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
5UTR-intron	ENST00000299293	ENST00000541171		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
5UTR-3CDS	ENST00000549921	ENST00000308330		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
5UTR-intron	ENST00000549921	ENST00000541171		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
5UTR-3CDS	ENST00000550389	ENST00000308330		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
5UTR-intron	ENST00000550389	ENST00000541171		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
intron-3CDS	ENST00000397997	ENST00000308330		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
intron-intron	ENST00000397997	ENST00000541171		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69864310	+	LEMD3	chr12	65632282	+
intron-5UTR	ENST00000299293	ENST00000378518		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000299293	ENST00000605895		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000299293	ENST00000378513		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000299293	ENST00000378512		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000299293	ENST00000488353		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000549921	ENST00000378518		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000549921	ENST00000605895		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000549921	ENST00000378513		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000549921	ENST00000378512		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000549921	ENST00000488353		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000550389	ENST00000378518		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000550389	ENST00000605895		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000550389	ENST00000378513		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000550389	ENST00000378512		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000550389	ENST00000488353		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000397997	ENST00000378518		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000397997	ENST00000605895		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000397997	ENST00000378513		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000397997	ENST00000378512		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
intron-5UTR	ENST00000397997	ENST00000488353		TCGA	RV	SARC	TCGA-DX-A3LY-01B	FRS2	chr12	69880077	+	RER1	chr1	2327223	+
5CDS-5UTR	ENST00000495708	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-intron	ENST00000495708	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-5UTR	ENST00000374710	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-intron	ENST00000374710	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-5UTR	ENST00000481272	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-intron	ENST00000481272	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-5UTR	ENST00000484973	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-intron	ENST00000484973	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5UTR-5UTR	ENST00000539376	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5UTR-intron	ENST00000539376	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-5UTR	ENST00000394926	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-intron	ENST00000394926	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
intron-5UTR	ENST00000480279	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
intron-intron	ENST00000480279	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
intron-5UTR	ENST00000374707	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
intron-intron	ENST00000374707	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-5UTR	ENST00000374716	ENST00000369135		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-intron	ENST00000374716	ENST00000479905		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FSD1L	chr9	108210516	+	OTUD7B	chr1	149949511	-
5CDS-3UTR	ENST00000375011	ENST00000375715		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	GALNT12	chr9	101570351	+	ROR2	chr9	94325611	-
5CDS-intron	ENST00000375011	ENST00000375708		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	GALNT12	chr9	101570351	+	ROR2	chr9	94325611	-
5CDS-intron	ENST00000375011	ENST00000550066		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	GALNT12	chr9	101570351	+	ROR2	chr9	94325611	-
intron-3UTR	ENST00000470473	ENST00000375715		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	GALNT12	chr9	101570351	+	ROR2	chr9	94325611	-
intron-intron	ENST00000470473	ENST00000375708		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	GALNT12	chr9	101570351	+	ROR2	chr9	94325611	-
intron-intron	ENST00000470473	ENST00000550066		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	GALNT12	chr9	101570351	+	ROR2	chr9	94325611	-
5UTR-3CDS	ENST00000368655	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GATAD2B	chr1	153895209	-	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000368655	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GATAD2B	chr1	153895209	-	ACSS3	chr12	81593120	+
5UTR-3CDS	ENST00000368655	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GATAD2B	chr1	153895209	-	ACSS3	chr12	81593120	+
In-frame	ENST00000373365	ENST00000372899		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
In-frame	ENST00000373365	ENST00000372901		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
5CDS-intron	ENST00000373365	ENST00000372883		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
5CDS-intron	ENST00000373365	ENST00000372903		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
intron-3CDS	ENST00000470973	ENST00000372899		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
intron-3CDS	ENST00000470973	ENST00000372901		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
intron-intron	ENST00000470973	ENST00000372883		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
intron-intron	ENST00000470973	ENST00000372903		TCGA	RV	SARC	TCGA-3B-A9HL-01A	GLO1	chr6	38670747	-	UBR2	chr6	42571326	+
In-frame	ENST00000418919	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
Frame-shit	ENST00000418919	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000418919	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000418919	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000418919	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000418919	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000418919	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
In-frame	ENST00000258145	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
Frame-shit	ENST00000258145	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000258145	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000258145	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000258145	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000258145	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000258145	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
In-frame	ENST00000543646	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
Frame-shit	ENST00000543646	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000543646	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000543646	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000543646	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000543646	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
5CDS-intron	ENST00000543646	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-3CDS	ENST00000542058	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-3CDS	ENST00000542058	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000542058	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000542058	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000542058	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000542058	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
intron-intron	ENST00000542058	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1KU-01A	GNS	chr12	65146478	-	SLC16A7	chr12	60173204	+
Frame-shit	ENST00000361924	ENST00000395297		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
5CDS-intron	ENST00000361924	ENST00000520283		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
intron-3CDS	ENST00000435830	ENST00000395297		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
intron-intron	ENST00000435830	ENST00000520283		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
Frame-shit	ENST00000444882	ENST00000395297		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
5CDS-intron	ENST00000444882	ENST00000520283		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
Frame-shit	ENST00000356847	ENST00000395297		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
5CDS-intron	ENST00000356847	ENST00000520283		TCGA	RV	SARC	TCGA-DX-A7EU-01A	GOLGA4	chr3	37292975	+	FAM135B	chr8	139278085	-
In-frame	ENST00000327946	ENST00000304129		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
In-frame	ENST00000327946	ENST00000369271		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
In-frame	ENST00000327946	ENST00000545353		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
5CDS-intron	ENST00000327946	ENST00000491814		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000536331	ENST00000304129		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000536331	ENST00000369271		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000536331	ENST00000545353		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-intron	ENST00000536331	ENST00000491814		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000552278	ENST00000304129		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000552278	ENST00000369271		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-3CDS	ENST00000552278	ENST00000545353		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
intron-intron	ENST00000552278	ENST00000491814		TCGA	RV	SARC	TCGA-DX-A6YR-01A	GRID1	chr10	88123698	-	AFAP1L2	chr10	116100490	-
Frame-shit	ENST00000396573	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000396573	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000396573	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
In-frame	ENST00000562109	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000562109	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000562109	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000535259	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000535259	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000535259	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000404927	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000404927	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000404927	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
Frame-shit	ENST00000330684	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000330684	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000330684	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
In-frame	ENST00000396575	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000396575	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000396575	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
intron-3CDS	ENST00000566670	ENST00000367321		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
intron-intron	ENST00000566670	ENST00000367307		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
intron-intron	ENST00000566670	ENST00000478643		TCGA	RV	SARC	TCGA-SI-A71O-01A	GRIN2A	chr16	10031816	-	MTHFD1L	chr6	151413603	+
5CDS-intron	ENST00000398016	ENST00000555159		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000398016	ENST00000555805		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000398016	ENST00000554643		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-5UTR	ENST00000398016	ENST00000554150		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-3UTR	ENST00000398016	ENST00000556481		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000398016	ENST00000322165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000359742	ENST00000555159		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000359742	ENST00000555805		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000359742	ENST00000554643		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-5UTR	ENST00000359742	ENST00000554150		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-3UTR	ENST00000359742	ENST00000556481		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000359742	ENST00000322165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000286445	ENST00000555159		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000286445	ENST00000555805		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000286445	ENST00000554643		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-5UTR	ENST00000286445	ENST00000554150		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-3UTR	ENST00000286445	ENST00000556481		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
5CDS-intron	ENST00000286445	ENST00000322165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000542021	ENST00000555159		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000542021	ENST00000555805		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000542021	ENST00000554643		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-5UTR	ENST00000542021	ENST00000554150		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-3UTR	ENST00000542021	ENST00000556481		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000542021	ENST00000322165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	GRIP1	chr12	66856704	-	HSD17B6	chr12	57156982	+
intron-3CDS	ENST00000505154	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000505154	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
intron-intron	ENST00000505154	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
Frame-shit	ENST00000502959	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
Frame-shit	ENST00000502959	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5CDS-intron	ENST00000502959	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000505764	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000505764	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-intron	ENST00000505764	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000507146	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000507146	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-intron	ENST00000507146	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
Frame-shit	ENST00000264424	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
Frame-shit	ENST00000264424	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5CDS-intron	ENST00000264424	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
Frame-shit	ENST00000503520	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
Frame-shit	ENST00000503520	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5CDS-intron	ENST00000503520	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000513437	ENST00000295874		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000513437	ENST00000474889		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
5UTR-intron	ENST00000513437	ENST00000495879		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GUCY1B3	chr4	156681012	+	PTPRG	chr3	61975299	+
In-frame	ENST00000360954	ENST00000300433		TCGA	RV	SARC	TCGA-FX-A3TO-01A	HS3ST3B1	chr17	14205389	+	TMEM92	chr17	48355917	+
In-frame	ENST00000360954	ENST00000507382		TCGA	RV	SARC	TCGA-FX-A3TO-01A	HS3ST3B1	chr17	14205389	+	TMEM92	chr17	48355917	+
5CDS-3UTR	ENST00000360954	ENST00000511882		TCGA	RV	SARC	TCGA-FX-A3TO-01A	HS3ST3B1	chr17	14205389	+	TMEM92	chr17	48355917	+
In-frame	ENST00000533871	ENST00000524381		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-intron	ENST00000533871	ENST00000529038		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-intron	ENST00000533871	ENST00000331898		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-5UTR	ENST00000533871	ENST00000374778		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-5UTR	ENST00000533871	ENST00000541867		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
Frame-shit	ENST00000321016	ENST00000524381		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-intron	ENST00000321016	ENST00000529038		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-intron	ENST00000321016	ENST00000331898		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-5UTR	ENST00000321016	ENST00000374778		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
5CDS-5UTR	ENST00000321016	ENST00000541867		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
intron-3CDS	ENST00000564347	ENST00000524381		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
intron-intron	ENST00000564347	ENST00000529038		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
intron-intron	ENST00000564347	ENST00000331898		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
intron-5UTR	ENST00000564347	ENST00000374778		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
intron-5UTR	ENST00000564347	ENST00000541867		TCGA	RV	SARC	TCGA-PC-A5DP-01A	IGSF9B	chr11	133815956	-	OPCML	chr11	132812905	-
Frame-shit	ENST00000261233	ENST00000344096		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000261233	ENST00000393555		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
5CDS-intron	ENST00000261233	ENST00000537632		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
intron-3CDS	ENST00000545837	ENST00000344096		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
intron-5UTR	ENST00000545837	ENST00000393555		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
intron-intron	ENST00000545837	ENST00000537632		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
Frame-shit	ENST00000457197	ENST00000344096		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000457197	ENST00000393555		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
5CDS-intron	ENST00000457197	ENST00000537632		TCGA	RV	SARC	TCGA-DX-A2J0-01A	IRAK3	chr12	66622150	+	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000377069	ENST00000261401		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000377069	ENST00000541050		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000377069	ENST00000549384		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000377069	ENST00000421578		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000377069	ENST00000420959		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000377069	ENST00000549772		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000542973	ENST00000261401		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000542973	ENST00000541050		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000542973	ENST00000549384		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000542973	ENST00000421578		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000542973	ENST00000420959		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000542973	ENST00000549772		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000377071	ENST00000261401		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000377071	ENST00000541050		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-5UTR	ENST00000377071	ENST00000549384		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000377071	ENST00000421578		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000377071	ENST00000420959		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
5CDS-intron	ENST00000377071	ENST00000549772		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000536437	ENST00000261401		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000536437	ENST00000541050		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000536437	ENST00000549384		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000536437	ENST00000421578		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000536437	ENST00000420959		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000536437	ENST00000549772		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000538046	ENST00000261401		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000538046	ENST00000541050		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000538046	ENST00000549384		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000538046	ENST00000421578		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000538046	ENST00000420959		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000538046	ENST00000549772		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000543852	ENST00000261401		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000543852	ENST00000541050		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000543852	ENST00000549384		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000543852	ENST00000421578		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000543852	ENST00000420959		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
intron-intron	ENST00000543852	ENST00000549772		TCGA	RV	SARC	TCGA-IS-A3K7-01A	KDM2B	chr12	121877660	-	CORO1C	chr12	109095099	-
Frame-shit	ENST00000377967	ENST00000379565		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000377967	ENST00000544447		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000377967	ENST00000379548		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000377967	ENST00000540702		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000377967	ENST00000479809		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
Frame-shit	ENST00000382899	ENST00000379565		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000382899	ENST00000544447		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000382899	ENST00000379548		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000382899	ENST00000540702		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000382899	ENST00000479809		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
Frame-shit	ENST00000536777	ENST00000379565		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000536777	ENST00000544447		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000536777	ENST00000379548		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000536777	ENST00000540702		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000536777	ENST00000479809		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
Frame-shit	ENST00000543216	ENST00000379565		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000543216	ENST00000544447		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000543216	ENST00000379548		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-5UTR	ENST00000543216	ENST00000540702		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
5CDS-intron	ENST00000543216	ENST00000479809		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
intron-3CDS	ENST00000479423	ENST00000379565		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
intron-5UTR	ENST00000479423	ENST00000544447		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
intron-intron	ENST00000479423	ENST00000379548		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
intron-5UTR	ENST00000479423	ENST00000540702		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
intron-intron	ENST00000479423	ENST00000479809		TCGA	RV	SARC	TCGA-DX-A3UC-01A	KDM6A	chrX	44950109	+	RPS6KA3	chrX	20252932	-
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	SARC	TCGA-DX-AB2W-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
5CDS-3UTR	ENST00000367765	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367765	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367765	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367765	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367765	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-3UTR	ENST00000367767	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367767	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367767	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367767	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000367767	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-3UTR	ENST00000361580	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000361580	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000361580	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000361580	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000361580	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-3UTR	ENST00000538366	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000538366	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000538366	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000538366	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000538366	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-3UTR	ENST00000540905	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000540905	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000540905	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000540905	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
5CDS-intron	ENST00000540905	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
intron-3UTR	ENST00000490550	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
intron-intron	ENST00000490550	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
intron-intron	ENST00000490550	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
intron-intron	ENST00000490550	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
intron-intron	ENST00000490550	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1L3-01A	KIFAP3	chr1	169985603	-	C1orf112	chr1	169806068	+
In-frame	ENST00000558518	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558518	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558518	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558518	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558518	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558518	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
5CDS-intron	ENST00000558518	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000557933	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000557933	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000557933	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000557933	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000557933	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000557933	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
5CDS-intron	ENST00000557933	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000455727	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000455727	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000455727	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000455727	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000455727	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000455727	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
5CDS-intron	ENST00000455727	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000535915	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000535915	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000535915	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000535915	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000535915	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000535915	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
5CDS-intron	ENST00000535915	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000545707	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000545707	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000545707	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000545707	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000545707	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000545707	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
5CDS-intron	ENST00000545707	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558013	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558013	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558013	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558013	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558013	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
In-frame	ENST00000558013	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
5CDS-intron	ENST00000558013	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-3CDS	ENST00000560628	ENST00000425528		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-3CDS	ENST00000560628	ENST00000441499		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-3CDS	ENST00000560628	ENST00000356861		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-3CDS	ENST00000560628	ENST00000450764		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-3CDS	ENST00000560628	ENST00000592287		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-3CDS	ENST00000560628	ENST00000588216		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
intron-intron	ENST00000560628	ENST00000589956		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	LDLR	chr19	11234020	+	TNPO2	chr19	12817609	-
Frame-shit	ENST00000316843	ENST00000561311		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	LLGL1	chr17	18141923	+	TLN2	chr15	63014552	+
Frame-shit	ENST00000316843	ENST00000306829		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	LLGL1	chr17	18141923	+	TLN2	chr15	63014552	+
5CDS-intron	ENST00000316843	ENST00000559908		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	LLGL1	chr17	18141923	+	TLN2	chr15	63014552	+
5CDS-intron	ENST00000316843	ENST00000472902		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	LLGL1	chr17	18141923	+	TLN2	chr15	63014552	+
intron-3CDS	ENST00000448637	ENST00000382148		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000448637	ENST00000447367		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000448637	ENST00000382150		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000448637	ENST00000382152		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000448637	ENST00000509207		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000448637	ENST00000382149		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000448637	ENST00000359001		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000312675	ENST00000382148		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000312675	ENST00000447367		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000312675	ENST00000382150		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000312675	ENST00000382152		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-5UTR	ENST00000312675	ENST00000509207		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-5UTR	ENST00000312675	ENST00000382149		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-5UTR	ENST00000312675	ENST00000359001		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000543006	ENST00000382148		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000543006	ENST00000447367		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000543006	ENST00000382150		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-3CDS	ENST00000543006	ENST00000382152		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-5UTR	ENST00000543006	ENST00000509207		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-5UTR	ENST00000543006	ENST00000382149		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5UTR-5UTR	ENST00000543006	ENST00000359001		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000471917	ENST00000382148		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000471917	ENST00000447367		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000471917	ENST00000382150		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000471917	ENST00000382152		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000471917	ENST00000509207		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000471917	ENST00000382149		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000471917	ENST00000359001		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	LPP	chr3	187943315	+	KCNIP4	chr4	20852290	-
5CDS-intron	ENST00000356396	ENST00000344710		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000356396	ENST00000397525		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000356396	ENST00000330125		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000356396	ENST00000397523		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000356396	ENST00000382180		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000356396	ENST00000441289		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000397728	ENST00000344710		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000397728	ENST00000397525		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000397728	ENST00000330125		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000397728	ENST00000397523		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000397728	ENST00000382180		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000397728	ENST00000441289		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000457828	ENST00000344710		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000457828	ENST00000397525		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000457828	ENST00000330125		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000457828	ENST00000397523		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000457828	ENST00000382180		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000457828	ENST00000441289		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000522411	ENST00000344710		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000522411	ENST00000397525		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000522411	ENST00000330125		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000522411	ENST00000397523		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000522411	ENST00000382180		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
5CDS-intron	ENST00000522411	ENST00000441289		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
intron-intron	ENST00000464357	ENST00000344710		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
intron-intron	ENST00000464357	ENST00000397525		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
intron-intron	ENST00000464357	ENST00000330125		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
intron-intron	ENST00000464357	ENST00000397523		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
intron-intron	ENST00000464357	ENST00000382180		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
intron-intron	ENST00000464357	ENST00000441289		TCGA	RV	SARC	TCGA-IF-A4AK-01A	LSS	chr21	47625750	-	EIF4ENIF1	chr22	31859953	-
Frame-shit	ENST00000404816	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
Frame-shit	ENST00000404816	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
Frame-shit	ENST00000354476	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
Frame-shit	ENST00000354476	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000390003	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000390003	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000418533	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000418533	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000402934	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000402934	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000404525	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000404525	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000407925	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000407925	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000272273	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000272273	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000498013	ENST00000378681		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
intron-3CDS	ENST00000498013	ENST00000463405		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTBP1	chr2	33174012	+	UCMA	chr10	13264200	-
5CDS-intron	ENST00000366919	ENST00000438512		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366919	ENST00000441631		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366919	ENST00000346752		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366919	ENST00000361842		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366919	ENST00000576459		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000392142	ENST00000438512		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000392142	ENST00000441631		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000392142	ENST00000346752		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000392142	ENST00000361842		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000392142	ENST00000576459		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000348824	ENST00000438512		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000348824	ENST00000441631		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000348824	ENST00000346752		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000348824	ENST00000361842		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000348824	ENST00000576459		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366920	ENST00000438512		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366920	ENST00000441631		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366920	ENST00000346752		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366920	ENST00000361842		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5CDS-intron	ENST00000366920	ENST00000576459		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
intron-intron	ENST00000446500	ENST00000438512		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
intron-intron	ENST00000446500	ENST00000441631		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
intron-intron	ENST00000446500	ENST00000346752		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
intron-intron	ENST00000446500	ENST00000361842		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
intron-intron	ENST00000446500	ENST00000576459		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MAP3K4	chr6	161502070	+	XAF1	chr17	6673962	+
5UTR-3CDS	ENST00000540418	ENST00000262031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-3CDS	ENST00000540418	ENST00000552247		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-intron	ENST00000540418	ENST00000549945		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-intron	ENST00000540418	ENST00000550726		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-intron	ENST00000540418	ENST00000542360		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000303145	ENST00000262031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000303145	ENST00000552247		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000303145	ENST00000549945		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000303145	ENST00000550726		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000303145	ENST00000542360		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000411698	ENST00000262031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000411698	ENST00000552247		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000411698	ENST00000549945		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000411698	ENST00000550726		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000411698	ENST00000542360		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000393543	ENST00000262031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000393543	ENST00000552247		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000393543	ENST00000549945		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000393543	ENST00000550726		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000393543	ENST00000542360		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000430606	ENST00000262031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
Frame-shit	ENST00000430606	ENST00000552247		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000430606	ENST00000549945		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000430606	ENST00000550726		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5CDS-intron	ENST00000430606	ENST00000542360		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-3CDS	ENST00000545724	ENST00000262031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-3CDS	ENST00000545724	ENST00000552247		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-intron	ENST00000545724	ENST00000549945		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-intron	ENST00000545724	ENST00000550726		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
5UTR-intron	ENST00000545724	ENST00000542360		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68726008	-	RBMS2	chr12	56974968	+
intron-intron	ENST00000264674	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000264674	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000264674	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000264674	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000264674	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000264674	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000392736	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000392736	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000392736	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000392736	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000392736	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000392736	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000464456	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000464456	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000464456	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000464456	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000464456	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000464456	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000472280	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000472280	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000472280	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000472280	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000472280	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000472280	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000494292	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000494292	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000494292	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5CDS-intron	ENST00000494292	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5CDS-3UTR	ENST00000494292	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5CDS-5UTR	ENST00000494292	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000468789	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000468789	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000468789	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000468789	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000468789	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000468789	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000460814	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000460814	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000460814	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000460814	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000460814	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000460814	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000433243	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000433243	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000433243	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-intron	ENST00000433243	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3UTR	ENST00000433243	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-5UTR	ENST00000433243	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5UTR-intron	ENST00000485957	ENST00000469710		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5UTR-intron	ENST00000485957	ENST00000493101		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5UTR-intron	ENST00000485957	ENST00000264468		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5UTR-intron	ENST00000485957	ENST00000330540		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5UTR-3UTR	ENST00000485957	ENST00000483949		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
5UTR-5UTR	ENST00000485957	ENST00000393627		TCGA	RV	SARC	TCGA-DX-A3UA-01A	MECOM	chr3	169381124	-	CD86	chr3	121810448	+
intron-3CDS	ENST00000464356	ENST00000367064		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-intron	ENST00000464356	ENST00000367063		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-intron	ENST00000464356	ENST00000391921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000464356	ENST00000367067		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000464356	ENST00000314754		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000464356	ENST00000391920		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000464356	ENST00000367062		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000464356	ENST00000367065		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000464356	ENST00000465534		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3CDS	ENST00000348159	ENST00000367064		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000348159	ENST00000367063		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000348159	ENST00000391921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000348159	ENST00000367067		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000348159	ENST00000314754		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000348159	ENST00000391920		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000348159	ENST00000367062		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000348159	ENST00000367065		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000348159	ENST00000465534		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3CDS	ENST00000353795	ENST00000367064		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000353795	ENST00000367063		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000353795	ENST00000391921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000353795	ENST00000367067		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000353795	ENST00000314754		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000353795	ENST00000391920		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000353795	ENST00000367062		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000353795	ENST00000367065		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000353795	ENST00000465534		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3CDS	ENST00000340875	ENST00000367064		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000340875	ENST00000367063		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000340875	ENST00000391921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000340875	ENST00000367067		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000340875	ENST00000314754		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000340875	ENST00000391920		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000340875	ENST00000367062		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000340875	ENST00000367065		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000340875	ENST00000465534		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3CDS	ENST00000368240	ENST00000367064		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000368240	ENST00000367063		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-intron	ENST00000368240	ENST00000391921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000368240	ENST00000367067		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000368240	ENST00000314754		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000368240	ENST00000391920		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000368240	ENST00000367062		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000368240	ENST00000367065		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
5UTR-3UTR	ENST00000368240	ENST00000465534		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3CDS	ENST00000360595	ENST00000367064		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-intron	ENST00000360595	ENST00000367063		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-intron	ENST00000360595	ENST00000391921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000360595	ENST00000367067		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000360595	ENST00000314754		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000360595	ENST00000391920		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000360595	ENST00000367062		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000360595	ENST00000367065		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
intron-3UTR	ENST00000360595	ENST00000465534		TCGA	RV	SARC	TCGA-DX-A7EI-01A	MEF2D	chr1	156470278	-	CD55	chr1	207532891	+
In-frame	ENST00000334370	ENST00000263370		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MEGF8	chr19	42875634	+	ITPKC	chr19	41231245	+
In-frame	ENST00000251268	ENST00000263370		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MEGF8	chr19	42875634	+	ITPKC	chr19	41231245	+
intron-3CDS	ENST00000378073	ENST00000263370		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MEGF8	chr19	42875634	+	ITPKC	chr19	41231245	+
3UTR-3CDS	ENST00000578646	ENST00000465259		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
3UTR-3CDS	ENST00000578646	ENST00000310053		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
3UTR-3CDS	ENST00000578646	ENST00000392912		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
3UTR-3CDS	ENST00000578646	ENST00000494055		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
3UTR-5UTR	ENST00000578646	ENST00000481663		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
Frame-shit	ENST00000261537	ENST00000465259		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
Frame-shit	ENST00000261537	ENST00000310053		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
In-frame	ENST00000261537	ENST00000392912		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
In-frame	ENST00000261537	ENST00000494055		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
5CDS-5UTR	ENST00000261537	ENST00000481663		TCGA	RV	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19353689	+	HLTF	chr3	148802676	-
intron-3CDS	ENST00000421797	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000421797	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000421797	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000421797	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000421797	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000429546	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000429546	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000429546	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000429546	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000429546	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000352689	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000352689	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000352689	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000352689	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000352689	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000498778	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000498778	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000498778	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000498778	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000498778	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L2-01A	MKLN1	chr7	131012756	+	DNM3	chr1	171956796	+
5CDS-intron	ENST00000257552	ENST00000359499		TCGA	RV	SARC	TCGA-FX-A3RE-01A	MSI1	chr12	120783938	-	KRT78	chr12	53242405	-
5CDS-intron	ENST00000257552	ENST00000304620		TCGA	RV	SARC	TCGA-FX-A3RE-01A	MSI1	chr12	120783938	-	KRT78	chr12	53242405	-
intron-intron	ENST00000546622	ENST00000359499		TCGA	RV	SARC	TCGA-FX-A3RE-01A	MSI1	chr12	120783938	-	KRT78	chr12	53242405	-
intron-intron	ENST00000546622	ENST00000304620		TCGA	RV	SARC	TCGA-FX-A3RE-01A	MSI1	chr12	120783938	-	KRT78	chr12	53242405	-
Frame-shit	ENST00000550697	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000550697	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000550697	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-5UTR	ENST00000550697	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000550697	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
In-frame	ENST00000548580	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000548580	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000548580	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-5UTR	ENST00000548580	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000548580	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
Frame-shit	ENST00000293422	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000293422	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000293422	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-5UTR	ENST00000293422	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000293422	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
3UTR-3CDS	ENST00000348108	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
3UTR-intron	ENST00000348108	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
3UTR-intron	ENST00000348108	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
3UTR-5UTR	ENST00000348108	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
3UTR-intron	ENST00000348108	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
Frame-shit	ENST00000549017	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000549017	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000549017	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-5UTR	ENST00000549017	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000549017	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-3CDS	ENST00000549566	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000549566	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000549566	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-5UTR	ENST00000549566	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000549566	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-3CDS	ENST00000536128	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000536128	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000536128	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-5UTR	ENST00000536128	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000536128	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
Frame-shit	ENST00000547649	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000547649	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000547649	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-5UTR	ENST00000547649	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000547649	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-3CDS	ENST00000547408	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000547408	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000547408	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-5UTR	ENST00000547408	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000547408	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-3CDS	ENST00000551589	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000551589	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000551589	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-5UTR	ENST00000551589	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000551589	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
In-frame	ENST00000548400	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000548400	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000548400	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-5UTR	ENST00000548400	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
5CDS-intron	ENST00000548400	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-3CDS	ENST00000548293	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000548293	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000548293	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-5UTR	ENST00000548293	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000548293	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-3CDS	ENST00000551954	ENST00000471714		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000551954	ENST00000284322		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000551954	ENST00000495063		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-5UTR	ENST00000551954	ENST00000383691		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
intron-intron	ENST00000551954	ENST00000532144		TCGA	RV	SARC	TCGA-DX-A3U9-01A	MYL6	chr12	56555359	+	ABI3BP	chr3	100557308	-
In-frame	ENST00000360772	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000360772	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000360772	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000360772	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000360772	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000360772	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000359169	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000359169	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000359169	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000359169	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000359169	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000359169	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000360304	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000360304	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000360304	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000360304	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000360304	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000360304	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000418370	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000418370	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000418370	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000418370	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000418370	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000418370	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000578202	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000578202	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000578202	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000578202	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000578202	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000578202	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000354792	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000354792	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000354792	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000354792	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000354792	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000354792	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000346322	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000346322	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000346322	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
Frame-shit	ENST00000346322	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000346322	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000346322	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000583087	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000583087	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000583087	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000583087	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000583087	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000583087	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000475616	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000475616	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000475616	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
In-frame	ENST00000475616	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000475616	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5CDS-intron	ENST00000475616	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000510775	ENST00000400301		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000510775	ENST00000308271		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000510775	ENST00000374732		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-3CDS	ENST00000510775	ENST00000529637		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000510775	ENST00000479177		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
intron-intron	ENST00000510775	ENST00000421625		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MYLK	chr3	123512524	-	USP48	chr1	22016592	-
5UTR-3CDS	ENST00000341724	ENST00000373184		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000341724	ENST00000373187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000341724	ENST00000356100		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000341724	ENST00000373190		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000341724	ENST00000373193		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000341724	ENST00000373198		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000341724	ENST00000373201		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-intron	ENST00000341724	ENST00000485499		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000373184		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000373187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000356100		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000373190		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000373193		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000373198		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000372004	ENST00000373201		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-intron	ENST00000372004	ENST00000485499		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000373184		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000373187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000356100		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000373190		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000373193		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000373198		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371998	ENST00000373201		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-intron	ENST00000371998	ENST00000485499		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000373184		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000373187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000356100		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000373190		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000373193		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000373198		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000371997	ENST00000373201		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-intron	ENST00000371997	ENST00000485499		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000373184		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000373187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000356100		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000373190		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000373193		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000373198		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000497292	ENST00000373201		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
intron-intron	ENST00000497292	ENST00000485499		TCGA	RV	SARC	TCGA-DX-A1KU-01A	NCOA3	chr20	46130763	+	PTPRT	chr20	41101202	-
5UTR-3CDS	ENST00000266742	ENST00000315266		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000266742	ENST00000478722		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000266742	ENST00000459628		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000266742	ENST00000543237		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000266742	ENST00000305960		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3UTR	ENST00000266742	ENST00000544752		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000429527	ENST00000315266		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000429527	ENST00000478722		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000429527	ENST00000459628		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000429527	ENST00000543237		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000429527	ENST00000305960		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3UTR	ENST00000429527	ENST00000544752		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
3UTR-3CDS	ENST00000555114	ENST00000315266		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
3UTR-3CDS	ENST00000555114	ENST00000478722		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
3UTR-3CDS	ENST00000555114	ENST00000459628		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
3UTR-3CDS	ENST00000555114	ENST00000543237		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
3UTR-3CDS	ENST00000555114	ENST00000305960		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
3UTR-3UTR	ENST00000555114	ENST00000544752		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000411739	ENST00000315266		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000411739	ENST00000478722		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000411739	ENST00000459628		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000411739	ENST00000543237		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3CDS	ENST00000411739	ENST00000305960		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
5UTR-3UTR	ENST00000411739	ENST00000544752		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000557644	ENST00000315266		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000557644	ENST00000478722		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000557644	ENST00000459628		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000557644	ENST00000543237		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000557644	ENST00000305960		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3UTR	ENST00000557644	ENST00000544752		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000457368	ENST00000315266		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000457368	ENST00000478722		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000457368	ENST00000459628		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000457368	ENST00000543237		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3CDS	ENST00000457368	ENST00000305960		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
intron-3UTR	ENST00000457368	ENST00000544752		TCGA	RV	SARC	TCGA-DX-AB2O-01A	NEDD1	chr12	97301078	+	GPHN	chr14	67431908	+
Frame-shit	ENST00000266742	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000266742	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000266742	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000266742	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000429527	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000429527	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000429527	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000429527	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000555114	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000555114	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000555114	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-intron	ENST00000555114	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000411739	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000411739	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000411739	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
intron-intron	ENST00000411739	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000557644	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000557644	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
Frame-shit	ENST00000557644	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000557644	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5UTR-3CDS	ENST00000457368	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5UTR-3CDS	ENST00000457368	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5UTR-3CDS	ENST00000457368	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5UTR-intron	ENST00000457368	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	GRIP1	chr12	66826408	-
5CDS-5UTR	ENST00000339362	ENST00000542334		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000339362	ENST00000268057		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000339362	ENST00000539603		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000339362	ENST00000395205		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-3UTR	ENST00000339362	ENST00000564239		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000261908	ENST00000542334		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000261908	ENST00000268057		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000261908	ENST00000539603		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000261908	ENST00000395205		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-3UTR	ENST00000261908	ENST00000564239		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000558964	ENST00000542334		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000558964	ENST00000268057		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000558964	ENST00000539603		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000558964	ENST00000395205		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-3UTR	ENST00000558964	ENST00000564239		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000560262	ENST00000542334		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000560262	ENST00000268057		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000560262	ENST00000539603		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-5UTR	ENST00000560262	ENST00000395205		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5CDS-3UTR	ENST00000560262	ENST00000564239		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
intron-5UTR	ENST00000560352	ENST00000542334		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
intron-5UTR	ENST00000560352	ENST00000268057		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
intron-5UTR	ENST00000560352	ENST00000539603		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
intron-5UTR	ENST00000560352	ENST00000395205		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
intron-3UTR	ENST00000560352	ENST00000564239		TCGA	RV	SARC	TCGA-DX-AATS-01A	NEO1	chr15	73428368	+	BBS4	chr15	73002041	+
5UTR-3CDS	ENST00000282516	ENST00000400105		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000282516	ENST00000317931		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000282516	ENST00000284898		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000282516	ENST00000400104		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000282516	ENST00000535782		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-intron	ENST00000282516	ENST00000578677		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000448238	ENST00000400105		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000448238	ENST00000317931		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000448238	ENST00000284898		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000448238	ENST00000400104		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-3CDS	ENST00000448238	ENST00000535782		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5UTR-intron	ENST00000448238	ENST00000578677		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
intron-3CDS	ENST00000504430	ENST00000400105		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
intron-3CDS	ENST00000504430	ENST00000317931		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
intron-3CDS	ENST00000504430	ENST00000284898		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
intron-3CDS	ENST00000504430	ENST00000400104		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
intron-3CDS	ENST00000504430	ENST00000535782		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
intron-intron	ENST00000504430	ENST00000578677		TCGA	RV	SARC	TCGA-DX-AB2W-01A	NIPBL	chr5	36877280	+	L3MBTL4	chr18	6171941	-
5CDS-5UTR	ENST00000381736	ENST00000424834		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000381736	ENST00000382108		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381736	ENST00000382095		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381736	ENST00000474317		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381736	ENST00000399949		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381736	ENST00000409126		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381736	ENST00000343003		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000463407	ENST00000424834		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000463407	ENST00000382108		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000463407	ENST00000382095		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000463407	ENST00000474317		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000463407	ENST00000399949		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000463407	ENST00000409126		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000463407	ENST00000343003		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-5UTR	ENST00000466694	ENST00000424834		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-5UTR	ENST00000466694	ENST00000382108		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-intron	ENST00000466694	ENST00000382095		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-intron	ENST00000466694	ENST00000474317		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-intron	ENST00000466694	ENST00000399949		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-intron	ENST00000466694	ENST00000409126		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
3UTR-intron	ENST00000466694	ENST00000343003		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000381718	ENST00000424834		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000381718	ENST00000382108		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381718	ENST00000382095		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381718	ENST00000474317		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381718	ENST00000399949		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381718	ENST00000409126		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000381718	ENST00000343003		TCGA	RV	SARC	TCGA-WK-A8XX-01A	NUPL1	chr13	25889605	+	SPATA13	chr13	24796957	+
In-frame	ENST00000393249	ENST00000551529		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
In-frame	ENST00000393249	ENST00000256010		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
In-frame	ENST00000261183	ENST00000551529		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
In-frame	ENST00000261183	ENST00000256010		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
Frame-shit	ENST00000393250	ENST00000551529		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
Frame-shit	ENST00000393250	ENST00000256010		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
intron-3CDS	ENST00000552178	ENST00000551529		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
intron-3CDS	ENST00000552178	ENST00000256010		TCGA	RV	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76844631	-	NTS	chr12	86270418	+
In-frame	ENST00000420696	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000420696	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000401534	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000401534	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000559240	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000559240	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000367897	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000367897	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000540236	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000540236	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000560641	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000560641	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000474046	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000474046	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000485769	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000485769	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000540246	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
intron-3CDS	ENST00000540246	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6YR-01A	PBX1	chr1	164532548	+	RFWD2	chr1	175958615	-
In-frame	ENST00000376279	ENST00000602402		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
Frame-shit	ENST00000376279	ENST00000376795		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
In-frame	ENST00000376286	ENST00000602402		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
Frame-shit	ENST00000376286	ENST00000376795		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
In-frame	ENST00000376285	ENST00000602402		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
Frame-shit	ENST00000376285	ENST00000376795		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
intron-3CDS	ENST00000485946	ENST00000602402		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
intron-3CDS	ENST00000485946	ENST00000376795		TCGA	RV	SARC	TCGA-DX-AB2P-01A	PCCA	chr13	100888132	+	DNAJC3	chr13	96443127	+
Frame-shit	ENST00000308191	ENST00000361961		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PDE7B	chr6	136472393	+	KIF21A	chr12	39726546	-
Frame-shit	ENST00000308191	ENST00000395670		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PDE7B	chr6	136472393	+	KIF21A	chr12	39726546	-
Frame-shit	ENST00000308191	ENST00000544797		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PDE7B	chr6	136472393	+	KIF21A	chr12	39726546	-
Frame-shit	ENST00000308191	ENST00000361418		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PDE7B	chr6	136472393	+	KIF21A	chr12	39726546	-
Frame-shit	ENST00000308191	ENST00000541463		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PDE7B	chr6	136472393	+	KIF21A	chr12	39726546	-
5CDS-intron	ENST00000308191	ENST00000547745		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PDE7B	chr6	136472393	+	KIF21A	chr12	39726546	-
Frame-shit	ENST00000335312	ENST00000228705		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000335312	ENST00000551214		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
Frame-shit	ENST00000539785	ENST00000228705		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000539785	ENST00000551214		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
Frame-shit	ENST00000589578	ENST00000228705		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000589578	ENST00000551214		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
Frame-shit	ENST00000537021	ENST00000228705		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5CDS-intron	ENST00000537021	ENST00000551214		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5UTR-3CDS	ENST00000587482	ENST00000228705		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5UTR-intron	ENST00000587482	ENST00000551214		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIP5K1C	chr19	3700295	-	PPM1H	chr12	63226059	-
5CDS-3UTR	ENST00000309364	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000359180	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000317589	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000355397	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000429027	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000539256	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000299275	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000538714	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000543806	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
5CDS-3UTR	ENST00000424268	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
intron-3UTR	ENST00000540972	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
3UTR-3UTR	ENST00000510738	ENST00000592666		TCGA	RV	SARC	TCGA-DX-A48N-01A	PLEKHA5	chr12	19422819	+	UHRF1	chr19	4941540	+
Frame-shit	ENST00000358994	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000358994	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
In-frame	ENST00000393370	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000393370	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
Frame-shit	ENST00000337738	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000337738	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
In-frame	ENST00000348141	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000348141	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000452489	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000452489	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
Frame-shit	ENST00000357197	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000357197	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
In-frame	ENST00000347048	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000347048	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
In-frame	ENST00000355007	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
5CDS-intron	ENST00000355007	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000423100	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000423100	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000524946	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000524946	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000436883	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000436883	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000414510	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000414510	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000432124	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432124	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000435305	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435305	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000419582	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000419582	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000432651	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000432651	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000435132	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000435132	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-3CDS	ENST00000434095	ENST00000358127		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000523241		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000520154		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000377852		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000377853		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000522003		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000520281		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000414447		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000523145		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000446742		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
intron-intron	ENST00000434095	ENST00000377847		TCGA	RV	SARC	TCGA-IE-A3OV-01A	PPP2R4	chr9	131911224	+	PAX5	chr9	37034103	-
In-frame	ENST00000247833	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000247833	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000247833	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000378815	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000378815	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-3CDS	ENST00000325555	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5UTR-intron	ENST00000325555	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000483530	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000483530	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000550536	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000550536	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
In-frame	ENST00000362025	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000362025	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000551641	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000551641	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000553099	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000553099	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000550847	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000550847	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1L3-01A	RAB3IP	chr12	70150443	+	KCNC2	chr12	75445097	-
5CDS-5UTR	ENST00000448150	ENST00000262316		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000448150	ENST00000454039		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000367649	ENST00000262316		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
5CDS-5UTR	ENST00000367649	ENST00000454039		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000465723	ENST00000262316		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000465723	ENST00000454039		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000462775	ENST00000262316		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
intron-5UTR	ENST00000462775	ENST00000454039		TCGA	RV	SARC	TCGA-DX-A8BM-01A	RASAL2	chr1	178269253	+	RHBDF1	chr16	115037	-
Frame-shit	ENST00000444746	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
Frame-shit	ENST00000453091	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
Frame-shit	ENST00000428287	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
Frame-shit	ENST00000243326	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
Frame-shit	ENST00000430328	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
intron-3CDS	ENST00000433166	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
intron-3CDS	ENST00000457745	ENST00000243347		TCGA	RV	SARC	TCGA-X6-A8C2-01A	RIF1	chr2	152326378	+	TNFAIP6	chr2	152220457	+
In-frame	ENST00000005386	ENST00000549343		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
In-frame	ENST00000005386	ENST00000305620		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
intron-3CDS	ENST00000548211	ENST00000549343		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
intron-3CDS	ENST00000548211	ENST00000305620		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
Frame-shit	ENST00000432584	ENST00000549343		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
Frame-shit	ENST00000432584	ENST00000305620		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
intron-3CDS	ENST00000380650	ENST00000549343		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
intron-3CDS	ENST00000380650	ENST00000305620		TCGA	RV	SARC	TCGA-DX-A2J4-01A	RPAP3	chr12	48073276	-	KRT74	chr12	52965238	-
In-frame	ENST00000265678	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5CDS-intron	ENST00000265678	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5CDS-intron	ENST00000265678	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5CDS-intron	ENST00000265678	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5CDS-intron	ENST00000265678	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5CDS-intron	ENST00000265678	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5CDS-intron	ENST00000265678	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-3CDS	ENST00000510118	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000510118	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000510118	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000510118	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000510118	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000510118	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000510118	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-3CDS	ENST00000503859	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000503859	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000503859	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000503859	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000503859	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000503859	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000503859	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-3CDS	ENST00000481261	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000481261	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000481261	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000481261	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000481261	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000481261	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000481261	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-3CDS	ENST00000405189	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000405189	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000405189	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000405189	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000405189	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000405189	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000405189	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-3CDS	ENST00000366863	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-intron	ENST00000366863	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-intron	ENST00000366863	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-intron	ENST00000366863	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-intron	ENST00000366863	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-intron	ENST00000366863	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-intron	ENST00000366863	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-3CDS	ENST00000509742	ENST00000428849		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000509742	ENST00000486695		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000509742	ENST00000417146		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000509742	ENST00000374523		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000509742	ENST00000492999		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000509742	ENST00000448818		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
intron-intron	ENST00000509742	ENST00000467671		TCGA	RV	SARC	TCGA-IE-A3OV-01A	RPS6KA2	chr6	167040409	-	KIFC1	chr6	33365806	+
5UTR-5UTR	ENST00000496398	ENST00000542455		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
5UTR-intron	ENST00000496398	ENST00000587143		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
5UTR-5UTR	ENST00000496398	ENST00000588578		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
5UTR-5UTR	ENST00000496398	ENST00000587986		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
5UTR-5UTR	ENST00000496398	ENST00000589319		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
5UTR-intron	ENST00000496398	ENST00000445217		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
3UTR-5UTR	ENST00000462186	ENST00000542455		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
3UTR-intron	ENST00000462186	ENST00000587143		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
3UTR-5UTR	ENST00000462186	ENST00000588578		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
3UTR-5UTR	ENST00000462186	ENST00000587986		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
3UTR-5UTR	ENST00000462186	ENST00000589319		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
3UTR-intron	ENST00000462186	ENST00000445217		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
intron-5UTR	ENST00000354585	ENST00000542455		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
intron-intron	ENST00000354585	ENST00000587143		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
intron-5UTR	ENST00000354585	ENST00000588578		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
intron-5UTR	ENST00000354585	ENST00000587986		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
intron-5UTR	ENST00000354585	ENST00000589319		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
intron-intron	ENST00000354585	ENST00000445217		TCGA	RV	SARC	TCGA-DX-A8BU-01A	RPSAP58	chr19	23991616	+	ZNF793	chr19	38013434	+
In-frame	ENST00000382298	ENST00000356711		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382298	ENST00000251041		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382298	ENST00000357550		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382298	ENST00000457511		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382298	ENST00000467639		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-3CDS	ENST00000402364	ENST00000356711		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000402364	ENST00000251041		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000402364	ENST00000357550		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000402364	ENST00000457511		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000402364	ENST00000467639		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
Frame-shit	ENST00000382292	ENST00000356711		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382292	ENST00000251041		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382292	ENST00000357550		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382292	ENST00000457511		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
5CDS-intron	ENST00000382292	ENST00000467639		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-3CDS	ENST00000476776	ENST00000356711		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000476776	ENST00000251041		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000476776	ENST00000357550		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000476776	ENST00000457511		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-intron	ENST00000476776	ENST00000467639		TCGA	RV	SARC	TCGA-PC-A5DM-01A	SACS	chr13	23985359	-	MYO16	chr13	109831890	+
intron-3CDS	ENST00000546961	ENST00000549396		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000546961	ENST00000550584		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000546961	ENST00000549325		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000545296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000550359		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000407050		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000333447		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000548586		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000443686		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000546961	ENST00000552948		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-intron	ENST00000546961	ENST00000541570		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
intron-intron	ENST00000546961	ENST00000541017		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000550891	ENST00000549396		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000550891	ENST00000550584		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000550891	ENST00000549325		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000545296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000550359		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000407050		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000333447		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000548586		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000443686		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000550891	ENST00000552948		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000550891	ENST00000541570		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000550891	ENST00000541017		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000354534	ENST00000549396		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000354534	ENST00000550584		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000354534	ENST00000549325		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000545296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000550359		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000407050		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000333447		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000548586		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000443686		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000354534	ENST00000552948		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000354534	ENST00000541570		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000354534	ENST00000541017		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000545061	ENST00000549396		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000545061	ENST00000550584		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
In-frame	ENST00000545061	ENST00000549325		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000545296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000550359		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000407050		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000333447		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000548586		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000443686		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-5UTR	ENST00000545061	ENST00000552948		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000545061	ENST00000541570		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5CDS-intron	ENST00000545061	ENST00000541017		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SCN8A	chr12	52145377	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000302190	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506271	+	LIN7A	chr12	81283148	-
3UTR-3CDS	ENST00000520233	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506271	+	LIN7A	chr12	81283148	-
5UTR-3CDS	ENST00000518385	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506271	+	LIN7A	chr12	81283148	-
5UTR-3CDS	ENST00000522911	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506271	+	LIN7A	chr12	81283148	-
intron-3CDS	ENST00000519914	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506271	+	LIN7A	chr12	81283148	-
5CDS-5UTR	ENST00000359120	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000359120	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000359120	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000359120	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000359120	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000359120	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000511217	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000511217	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000511217	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000511217	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000511217	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
5CDS-5UTR	ENST00000511217	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000511705	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000511705	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000511705	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000511705	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000511705	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
intron-5UTR	ENST00000511705	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A3LY-01B	SH3RF2	chr5	145317869	+	MDM1	chr12	68725001	-
Frame-shit	ENST00000264554	ENST00000587557		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
In-frame	ENST00000264554	ENST00000592504		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
Frame-shit	ENST00000264554	ENST00000585352		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
Frame-shit	ENST00000264554	ENST00000317221		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
Frame-shit	ENST00000264554	ENST00000586255		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
Frame-shit	ENST00000264554	ENST00000592896		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
Frame-shit	ENST00000264554	ENST00000603380		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
5CDS-5UTR	ENST00000264554	ENST00000538743		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
5CDS-5UTR	ENST00000264554	ENST00000393883		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SHC2	chr19	430684	-	ZNF559	chr19	9451778	+
5CDS-5UTR	ENST00000394817	ENST00000265192		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-intron	ENST00000394817	ENST00000511381		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000394817	ENST00000511706		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000394817	ENST00000394795		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000394817	ENST00000510080		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000265195	ENST00000265192		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-intron	ENST00000265195	ENST00000511381		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000265195	ENST00000511706		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000265195	ENST00000394795		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000265195	ENST00000510080		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000509534	ENST00000265192		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-intron	ENST00000509534	ENST00000511381		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000509534	ENST00000511706		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000509534	ENST00000394795		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
5CDS-5UTR	ENST00000509534	ENST00000510080		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000515008	ENST00000265192		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
intron-intron	ENST00000515008	ENST00000511381		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000515008	ENST00000511706		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000515008	ENST00000394795		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
intron-5UTR	ENST00000515008	ENST00000510080		TCGA	RV	SARC	TCGA-DX-A48P-01A	SIL1	chr5	138456724	-	PAIP2	chr5	138699448	+
In-frame	ENST00000248054	ENST00000586783		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000248054	ENST00000454313		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000248054	ENST00000346736		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000248054	ENST00000591586		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000596802	ENST00000586783		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000596802	ENST00000454313		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000596802	ENST00000346736		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000596802	ENST00000591586		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000379803	ENST00000586783		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000379803	ENST00000454313		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000379803	ENST00000346736		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
In-frame	ENST00000379803	ENST00000591586		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000595541	ENST00000586783		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000595541	ENST00000454313		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000595541	ENST00000346736		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000595541	ENST00000591586		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000594235	ENST00000586783		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000594235	ENST00000454313		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000594235	ENST00000346736		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
intron-3CDS	ENST00000594235	ENST00000591586		TCGA	RV	SARC	TCGA-MJ-A68H-01A	SIN3B	chr19	16952779	+	C19orf57	chr19	13996868	-
5CDS-5UTR	ENST00000280871	ENST00000555159		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000280871	ENST00000555805		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000280871	ENST00000554643		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000280871	ENST00000554150		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-intron	ENST00000280871	ENST00000556481		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000280871	ENST00000322165		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000380858	ENST00000555159		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000380858	ENST00000555805		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000380858	ENST00000554643		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000380858	ENST00000554150		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-intron	ENST00000380858	ENST00000556481		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000380858	ENST00000322165		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40499055	-	HSD17B6	chr12	57167618	+
3UTR-3CDS	ENST00000464978	ENST00000308482		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
3UTR-intron	ENST00000464978	ENST00000468950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
3UTR-intron	ENST00000464978	ENST00000289175		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
3UTR-intron	ENST00000464978	ENST00000244815		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
3UTR-intron	ENST00000464978	ENST00000392000		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
In-frame	ENST00000369556	ENST00000308482		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369556	ENST00000468950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369556	ENST00000289175		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369556	ENST00000244815		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369556	ENST00000392000		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
In-frame	ENST00000544441	ENST00000308482		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000544441	ENST00000468950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000544441	ENST00000289175		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000544441	ENST00000244815		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000544441	ENST00000392000		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
In-frame	ENST00000369552	ENST00000308482		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369552	ENST00000468950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369552	ENST00000289175		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369552	ENST00000244815		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369552	ENST00000392000		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
In-frame	ENST00000369557	ENST00000308482		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369557	ENST00000468950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369557	ENST00000289175		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369557	ENST00000244815		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-intron	ENST00000369557	ENST00000392000		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SLC35A1	chr6	88211028	+	LRRFIP1	chr2	238617187	+
5CDS-5UTR	ENST00000535225	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000535225	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000535225	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000535225	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000535225	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000535225	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000535225	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000535225	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000358657	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000358657	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000453097	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000453097	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000394856	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000394856	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000514353	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000514353	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-intron	ENST00000546663	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
3UTR-5UTR	ENST00000546663	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC4A8	chr12	51865316	+	MGAT4C	chr12	86443501	-
intron-intron	ENST00000488834	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000488834	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000488834	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
5CDS-intron	ENST00000474597	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
5CDS-intron	ENST00000474597	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
5CDS-5UTR	ENST00000474597	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000244763	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000244763	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000244763	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000397511	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000397511	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000397511	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000534851	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000534851	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000534851	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000489567	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000489567	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000489567	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000479365	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000479365	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000479365	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000462112	ENST00000535299		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-intron	ENST00000462112	ENST00000423158		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
intron-5UTR	ENST00000462112	ENST00000331010		TCGA	RV	SARC	TCGA-PC-A5DN-01A	SSR1	chr6	7290101	-	NTF3	chr12	5603360	+
5CDS-5UTR	ENST00000377897	ENST00000294168		TCGA	RV	SARC	TCGA-DX-A6YS-01A	STX5	chr11	62591638	-	TAF6L	chr11	62543243	+
5CDS-5UTR	ENST00000294179	ENST00000294168		TCGA	RV	SARC	TCGA-DX-A6YS-01A	STX5	chr11	62591638	-	TAF6L	chr11	62543243	+
5CDS-5UTR	ENST00000394690	ENST00000294168		TCGA	RV	SARC	TCGA-DX-A6YS-01A	STX5	chr11	62591638	-	TAF6L	chr11	62543243	+
5CDS-5UTR	ENST00000541317	ENST00000294168		TCGA	RV	SARC	TCGA-DX-A6YS-01A	STX5	chr11	62591638	-	TAF6L	chr11	62543243	+
intron-3CDS	ENST00000536230	ENST00000399881		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
intron-intron	ENST00000536230	ENST00000518904		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
intron-3CDS	ENST00000392282	ENST00000399881		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
intron-intron	ENST00000392282	ENST00000518904		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
5UTR-3CDS	ENST00000538427	ENST00000399881		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
5UTR-intron	ENST00000538427	ENST00000518904		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
5UTR-3CDS	ENST00000367456	ENST00000399881		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
5UTR-intron	ENST00000367456	ENST00000518904		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
3UTR-3CDS	ENST00000461481	ENST00000399881		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
3UTR-intron	ENST00000461481	ENST00000518904		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
intron-3CDS	ENST00000286332	ENST00000399881		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
intron-intron	ENST00000286332	ENST00000518904		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149663969	+	KCNU1	chr8	36721922	+
Frame-shit	ENST00000378932	ENST00000378707		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378932	ENST00000359836		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378932	ENST00000541735		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378932	ENST00000343523		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378932	ENST00000378677		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378932	ENST00000357033		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378932	ENST00000474231		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378932	ENST00000378723		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378932	ENST00000378702		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378932	ENST00000361471		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378932	ENST00000378680		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378932	ENST00000288447		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378932	ENST00000445312		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000378707		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000359836		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000541735		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000343523		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000378677		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000357033		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000288422	ENST00000474231		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000288422	ENST00000378723		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000288422	ENST00000378702		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000288422	ENST00000361471		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000288422	ENST00000378680		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000288422	ENST00000288447		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000288422	ENST00000445312		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000378707		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000359836		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000541735		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000343523		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000378677		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000357033		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
Frame-shit	ENST00000378933	ENST00000474231		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378933	ENST00000378723		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378933	ENST00000378702		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378933	ENST00000361471		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378933	ENST00000378680		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378933	ENST00000288447		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378933	ENST00000445312		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000378707		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000359836		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000541735		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000343523		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000378677		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000357033		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378930	ENST00000474231		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378930	ENST00000378723		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378930	ENST00000378702		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378930	ENST00000361471		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378930	ENST00000378680		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378930	ENST00000288447		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378930	ENST00000445312		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000378707		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000359836		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000541735		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000343523		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000378677		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000357033		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
In-frame	ENST00000378928	ENST00000474231		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378928	ENST00000378723		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378928	ENST00000378702		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378928	ENST00000361471		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378928	ENST00000378680		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378928	ENST00000288447		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5CDS-intron	ENST00000378928	ENST00000445312		TCGA	RV	SARC	TCGA-X6-A7WA-01A	TAB3	chrX	30870895	-	DMD	chrX	31366751	-
5UTR-intron	ENST00000519416	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000519416	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000519416	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000519416	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000519416	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000519416	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-5UTR	ENST00000519416	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-5UTR	ENST00000519416	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520615	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520615	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520615	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520615	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520615	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-5UTR	ENST00000520615	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-5UTR	ENST00000520615	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000443286	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000443286	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000443286	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000443286	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000443286	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000443286	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000443286	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000520340	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000520340	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000520340	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000520340	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000520340	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000520340	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000520340	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000518415	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000518415	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000518415	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000518415	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000518415	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000518415	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000518415	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000522752	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000522752	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000522752	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000522752	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000522752	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000522752	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000522752	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000348567	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000348567	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000348567	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000348567	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000348567	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000348567	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000348567	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000330691	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000330691	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000330691	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000330691	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000330691	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000330691	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000330691	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000317827	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000317827	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000317827	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000317827	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000317827	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000317827	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000317827	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000379931	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000379931	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000379931	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000379931	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000379931	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000379931	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000379931	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000276520	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000276520	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000276520	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000276520	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000276520	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000276520	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000276520	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520973	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520973	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520973	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-3UTR	ENST00000520973	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-intron	ENST00000520973	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-5UTR	ENST00000520973	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
5UTR-5UTR	ENST00000520973	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000520611	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000520611	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000520611	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-3UTR	ENST00000520611	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000520611	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000520611	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-5UTR	ENST00000520611	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TACC1	chr8	38646337	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000392951	ENST00000367669		TCGA	RV	SARC	TCGA-K1-A3PN-01A	TAGLN	chr11	117075503	+	RFWD2	chr1	176129420	-
intron-intron	ENST00000392951	ENST00000308769		TCGA	RV	SARC	TCGA-K1-A3PN-01A	TAGLN	chr11	117075503	+	RFWD2	chr1	176129420	-
intron-intron	ENST00000530649	ENST00000367669		TCGA	RV	SARC	TCGA-K1-A3PN-01A	TAGLN	chr11	117075503	+	RFWD2	chr1	176129420	-
intron-intron	ENST00000530649	ENST00000308769		TCGA	RV	SARC	TCGA-K1-A3PN-01A	TAGLN	chr11	117075503	+	RFWD2	chr1	176129420	-
intron-intron	ENST00000532870	ENST00000367669		TCGA	RV	SARC	TCGA-K1-A3PN-01A	TAGLN	chr11	117075503	+	RFWD2	chr1	176129420	-
intron-intron	ENST00000532870	ENST00000308769		TCGA	RV	SARC	TCGA-K1-A3PN-01A	TAGLN	chr11	117075503	+	RFWD2	chr1	176129420	-
intron-3CDS	ENST00000207157	ENST00000369617		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
intron-3CDS	ENST00000207157	ENST00000307546		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
intron-3CDS	ENST00000207157	ENST00000369615		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
intron-3CDS	ENST00000207157	ENST00000369611		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
intron-3UTR	ENST00000207157	ENST00000486456		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
Frame-shit	ENST00000369429	ENST00000369617		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
Frame-shit	ENST00000369429	ENST00000307546		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
Frame-shit	ENST00000369429	ENST00000369615		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
Frame-shit	ENST00000369429	ENST00000369611		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
5CDS-3UTR	ENST00000369429	ENST00000486456		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	MAGI3	chr1	114123164	+
5CDS-intron	ENST00000393359	ENST00000409869		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TGFBRAP1	chr2	105885729	-	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000393359	ENST00000295095		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TGFBRAP1	chr2	105885729	-	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000393359	ENST00000473426		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TGFBRAP1	chr2	105885729	-	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000258449	ENST00000409869		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TGFBRAP1	chr2	105885729	-	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000258449	ENST00000295095		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TGFBRAP1	chr2	105885729	-	ARHGAP15	chr2	144193170	+
5CDS-intron	ENST00000258449	ENST00000473426		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TGFBRAP1	chr2	105885729	-	ARHGAP15	chr2	144193170	+
5CDS-5UTR	ENST00000261600	ENST00000395925		TCGA	RV	SARC	TCGA-K1-A42X-02A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
5CDS-intron	ENST00000261600	ENST00000479210		TCGA	RV	SARC	TCGA-K1-A42X-02A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
5CDS-5UTR	ENST00000261600	ENST00000437480		TCGA	RV	SARC	TCGA-K1-A42X-02A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
intron-5UTR	ENST00000582313	ENST00000395925		TCGA	RV	SARC	TCGA-K1-A42X-02A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
intron-intron	ENST00000582313	ENST00000479210		TCGA	RV	SARC	TCGA-K1-A42X-02A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
intron-5UTR	ENST00000582313	ENST00000437480		TCGA	RV	SARC	TCGA-K1-A42X-02A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
Frame-shit	ENST00000461783	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000461783	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
intron-3CDS	ENST00000449545	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
intron-3CDS	ENST00000449545	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000367174	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000367174	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000456144	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000456144	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000318981	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000318981	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000360366	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000360366	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000529824	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000529824	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000456877	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000456877	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000528391	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000528391	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
intron-3CDS	ENST00000275246	ENST00000253329		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
intron-3CDS	ENST00000275246	ENST00000340881		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TIAM2	chr6	155486543	+	PPIL4	chr6	149826840	-
5CDS-5UTR	ENST00000394487	ENST00000374210		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000394487	ENST00000374212		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
5CDS-intron	ENST00000394487	ENST00000496650		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000355622	ENST00000374210		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
5CDS-5UTR	ENST00000355622	ENST00000374212		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
5CDS-intron	ENST00000355622	ENST00000496650		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
intron-5UTR	ENST00000472304	ENST00000374210		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
intron-5UTR	ENST00000472304	ENST00000374212		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
intron-intron	ENST00000472304	ENST00000496650		TCGA	RV	SARC	TCGA-DX-A8BV-01A	TLR4	chr9	120471007	+	SLC31A1	chr9	116018394	+
In-frame	ENST00000321196	ENST00000443617		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	HERC1	chr15	63956793	-
In-frame	ENST00000548305	ENST00000443617		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	HERC1	chr15	63956793	-
intron-3CDS	ENST00000549919	ENST00000443617		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMTC2	chr12	83081448	+	HERC1	chr15	63956793	-
Frame-shit	ENST00000266712	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMTC3	chr12	88570096	+	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000266712	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMTC3	chr12	88570096	+	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000266712	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMTC3	chr12	88570096	+	OSBPL8	chr12	76752591	-
5CDS-intron	ENST00000266712	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMTC3	chr12	88570096	+	OSBPL8	chr12	76752591	-
5CDS-5UTR	ENST00000301923	ENST00000558014		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-5UTR	ENST00000301923	ENST00000537942		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000536845		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000558816		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000389425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000355997		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000389433		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000389432		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000358066		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000389428		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000316364		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000301923	ENST00000354744		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-5UTR	ENST00000402203	ENST00000558014		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-5UTR	ENST00000402203	ENST00000537942		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000536845		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000558816		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000389425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000355997		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000389433		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000389432		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000358066		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000389428		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000316364		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
5CDS-intron	ENST00000402203	ENST00000354744		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-5UTR	ENST00000454349	ENST00000558014		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-5UTR	ENST00000454349	ENST00000537942		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000536845		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000558816		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000389425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000355997		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000389433		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000389432		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000358066		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000389428		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000316364		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000454349	ENST00000354744		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-5UTR	ENST00000335727	ENST00000558014		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-5UTR	ENST00000335727	ENST00000537942		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000536845		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000558816		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000389425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000355997		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000389433		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000389432		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000358066		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000389428		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000316364		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000335727	ENST00000354744		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-5UTR	ENST00000497559	ENST00000558014		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-5UTR	ENST00000497559	ENST00000537942		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000536845		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000558816		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000389425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000355997		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000389433		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000389432		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000358066		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000389428		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000316364		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
intron-intron	ENST00000497559	ENST00000354744		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	TNRC6B	chr22	40552186	+	SEMA6D	chr15	47762671	+
Frame-shit	ENST00000361337	ENST00000261267		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TOP1	chr20	39729993	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000361337	ENST00000549690		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TOP1	chr20	39729993	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000361337	ENST00000548839		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TOP1	chr20	39729993	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000263801	ENST00000284509		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000263801	ENST00000559829		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
5CDS-intron	ENST00000263801	ENST00000558959		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000382039	ENST00000284509		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000382039	ENST00000559829		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
5CDS-intron	ENST00000382039	ENST00000558959		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000382044	ENST00000284509		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000382044	ENST00000559829		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
5CDS-intron	ENST00000382044	ENST00000558959		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000450115	ENST00000284509		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
Frame-shit	ENST00000450115	ENST00000559829		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
5CDS-intron	ENST00000450115	ENST00000558959		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
intron-3CDS	ENST00000605155	ENST00000284509		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
intron-3CDS	ENST00000605155	ENST00000559829		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
intron-intron	ENST00000605155	ENST00000558959		TCGA	RV	SARC	TCGA-FX-A3NK-01A	TP53BP1	chr15	43762056	-	ATP8B4	chr15	50366382	-
intron-3CDS	ENST00000418703	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000418703	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000418703	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-5UTR	ENST00000418703	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000261740	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000261740	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000261740	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-5UTR	ENST00000261740	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000392719	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000392719	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000392719	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-5UTR	ENST00000392719	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000346520	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000346520	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-3CDS	ENST00000346520	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
5UTR-5UTR	ENST00000346520	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000541794	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000541794	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000541794	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-5UTR	ENST00000541794	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000536838	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000536838	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000536838	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-5UTR	ENST00000536838	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000544971	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000544971	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000544971	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-5UTR	ENST00000544971	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000537083	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000537083	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000537083	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-5UTR	ENST00000537083	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000536570	ENST00000425217		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000536570	ENST00000339824		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-3CDS	ENST00000536570	ENST00000302438		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
intron-5UTR	ENST00000536570	ENST00000545002		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TRPV4	chr12	110271155	-	KSR2	chr12	118020164	-
Frame-shit	ENST00000367879	ENST00000367821		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
5CDS-3UTR	ENST00000367879	ENST00000465440		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
Frame-shit	ENST00000372212	ENST00000367821		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
5CDS-3UTR	ENST00000372212	ENST00000465440		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
intron-3CDS	ENST00000462329	ENST00000367821		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
intron-3UTR	ENST00000462329	ENST00000465440		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
intron-3CDS	ENST00000469256	ENST00000367821		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
intron-3UTR	ENST00000469256	ENST00000465440		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
intron-3CDS	ENST00000470820	ENST00000367821		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
intron-3UTR	ENST00000470820	ENST00000465440		TCGA	RV	SARC	TCGA-DX-A1L2-01A	UCK2	chr1	165797169	+	TBX19	chr1	168277980	+
Frame-shit	ENST00000293218	ENST00000579662		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000293218	ENST00000339591		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000293218	ENST00000200181		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000293218	ENST00000450894		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000293218	ENST00000449880		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
5CDS-3UTR	ENST00000293218	ENST00000584558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000589666	ENST00000579662		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000589666	ENST00000339591		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000589666	ENST00000200181		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000589666	ENST00000450894		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
Frame-shit	ENST00000589666	ENST00000449880		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
5CDS-3UTR	ENST00000589666	ENST00000584558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	UNK	chr17	73781065	+	ITGB4	chr17	73736439	+
intron-intron	ENST00000339859	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000339859	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000339859	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000339859	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000339859	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000408019	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000408019	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000408019	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000408019	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000408019	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000428547	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000428547	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000428547	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000428547	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000428547	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000394811	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000394811	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000394811	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000394811	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000394811	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000497106	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000497106	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000497106	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000497106	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000497106	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000422491	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000422491	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000422491	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000422491	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000422491	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000319786	ENST00000539909		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000319786	ENST00000286621		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000319786	ENST00000372734		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000319786	ENST00000541550		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
intron-intron	ENST00000319786	ENST00000467840		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	USP54	chr10	75385695	-	ADK	chr10	76285014	+
Frame-shit	ENST00000338981	ENST00000543086		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
Frame-shit	ENST00000338981	ENST00000546231		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
Frame-shit	ENST00000338981	ENST00000397203		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
Frame-shit	ENST00000338981	ENST00000360905		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
Frame-shit	ENST00000338981	ENST00000589028		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
Frame-shit	ENST00000338981	ENST00000355446		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
5CDS-3UTR	ENST00000338981	ENST00000536573		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3CDS	ENST00000426564	ENST00000543086		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3CDS	ENST00000426564	ENST00000546231		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3CDS	ENST00000426564	ENST00000397203		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3CDS	ENST00000426564	ENST00000360905		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3CDS	ENST00000426564	ENST00000589028		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3CDS	ENST00000426564	ENST00000355446		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
3UTR-3UTR	ENST00000426564	ENST00000536573		TCGA	RV	SARC	TCGA-SI-A71O-06A	USP9Y	chrY	14851563	+	ERC1	chr12	1345935	+
5CDS-intron	ENST00000230122	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000230122	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZBTB24	chr6	109802278	-	BEST3	chr12	70049593	-
Frame-shit	ENST00000253048	ENST00000330915		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47615681	-	KANK3	chr19	8389980	-
Frame-shit	ENST00000253048	ENST00000593649		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47615681	-	KANK3	chr19	8389980	-
intron-3CDS	ENST00000594019	ENST00000330915		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47615681	-	KANK3	chr19	8389980	-
intron-3CDS	ENST00000594019	ENST00000593649		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47615681	-	KANK3	chr19	8389980	-
5CDS-5UTR	ENST00000320985	ENST00000393240		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000320985	ENST00000261205		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000320985	ENST00000457153		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000320985	ENST00000552744		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000320985	ENST00000549454		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000361642	ENST00000393240		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000361642	ENST00000261205		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000361642	ENST00000457153		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000361642	ENST00000552744		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000361642	ENST00000549454		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
3UTR-5UTR	ENST00000559858	ENST00000393240		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
3UTR-5UTR	ENST00000559858	ENST00000261205		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
3UTR-5UTR	ENST00000559858	ENST00000457153		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
3UTR-intron	ENST00000559858	ENST00000552744		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
3UTR-intron	ENST00000559858	ENST00000549454		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000560721	ENST00000393240		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000560721	ENST00000261205		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000560721	ENST00000457153		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000560721	ENST00000552744		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000560721	ENST00000549454		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000542815	ENST00000393240		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000542815	ENST00000261205		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-5UTR	ENST00000542815	ENST00000457153		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000542815	ENST00000552744		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
5CDS-intron	ENST00000542815	ENST00000549454		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
intron-5UTR	ENST00000446923	ENST00000393240		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
intron-5UTR	ENST00000446923	ENST00000261205		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
intron-5UTR	ENST00000446923	ENST00000457153		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
intron-intron	ENST00000446923	ENST00000552744		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
intron-intron	ENST00000446923	ENST00000549454		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ZEB1	chr10	31608221	+	SYT1	chr12	79258778	+
intron-3CDS	ENST00000509156	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000509156	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000509156	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000509156	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000306938	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000306938	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000306938	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000306938	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000399534	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000399534	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000399534	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000399534	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000505606	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000505606	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000505606	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000505606	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000509634	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000509634	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000509634	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000509634	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000509931	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-3CDS	ENST00000509931	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000509931	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
intron-intron	ENST00000509931	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
3UTR-3CDS	ENST00000499046	ENST00000230882		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
3UTR-3CDS	ENST00000499046	ENST00000357703		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
3UTR-intron	ENST00000499046	ENST00000537449		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
3UTR-intron	ENST00000499046	ENST00000513625		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF131	chr5	43068319	+	GHR	chr5	42688992	+
In-frame	ENST00000276816	ENST00000355496		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	ZNF16	chr8	146171397	-	PLEKHA4	chr19	49355583	-
In-frame	ENST00000276816	ENST00000263265		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	ZNF16	chr8	146171397	-	PLEKHA4	chr19	49355583	-
5CDS-intron	ENST00000276816	ENST00000596713		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	ZNF16	chr8	146171397	-	PLEKHA4	chr19	49355583	-
Frame-shit	ENST00000394909	ENST00000355496		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	ZNF16	chr8	146171397	-	PLEKHA4	chr19	49355583	-
Frame-shit	ENST00000394909	ENST00000263265		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	ZNF16	chr8	146171397	-	PLEKHA4	chr19	49355583	-
5CDS-intron	ENST00000394909	ENST00000596713		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	ZNF16	chr8	146171397	-	PLEKHA4	chr19	49355583	-
Frame-shit	ENST00000582337	ENST00000340533		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000582337	ENST00000494131		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000582337	ENST00000397914		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000582337	ENST00000299438		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-5UTR	ENST00000582337	ENST00000579064		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
Frame-shit	ENST00000309902	ENST00000340533		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000309902	ENST00000494131		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000309902	ENST00000397914		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000309902	ENST00000299438		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-5UTR	ENST00000309902	ENST00000579064		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
Frame-shit	ENST00000577538	ENST00000340533		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000577538	ENST00000494131		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000577538	ENST00000397914		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000577538	ENST00000299438		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-5UTR	ENST00000577538	ENST00000579064		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
Frame-shit	ENST00000299687	ENST00000340533		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000299687	ENST00000494131		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000299687	ENST00000397914		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-3UTR	ENST00000299687	ENST00000299438		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
5CDS-5UTR	ENST00000299687	ENST00000579064		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
intron-3CDS	ENST00000584235	ENST00000340533		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
intron-3UTR	ENST00000584235	ENST00000494131		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
intron-3UTR	ENST00000584235	ENST00000397914		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
intron-3UTR	ENST00000584235	ENST00000299438		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
intron-5UTR	ENST00000584235	ENST00000579064		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF407	chr18	72353078	+	CYB5A	chr18	71923010	-
In-frame	ENST00000368554	ENST00000398250		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000368554	ENST00000439221		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000368554	ENST00000398248		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000368554	ENST00000541332		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000368554	ENST00000369073		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000368554	ENST00000496437		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000361518	ENST00000398250		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000361518	ENST00000439221		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000361518	ENST00000398248		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000361518	ENST00000541332		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000361518	ENST00000369073		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000361518	ENST00000496437		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000359035	ENST00000398250		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000359035	ENST00000439221		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000359035	ENST00000398248		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000359035	ENST00000541332		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000359035	ENST00000369073		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000359035	ENST00000496437		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000463816	ENST00000398250		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000463816	ENST00000439221		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000463816	ENST00000398248		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000463816	ENST00000541332		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000463816	ENST00000369073		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
3UTR-intron	ENST00000463816	ENST00000496437		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF511	chr10	135125345	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000544604	ENST00000402357		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000544604	ENST00000358295		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000544604	ENST00000473898		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000544604	ENST00000406880		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000332811	ENST00000402357		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000332811	ENST00000358295		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000332811	ENST00000473898		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000332811	ENST00000406880		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000402174	ENST00000402357		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000402174	ENST00000358295		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000402174	ENST00000473898		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000402174	ENST00000406880		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000406323	ENST00000402357		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000406323	ENST00000358295		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000406323	ENST00000473898		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
5CDS-intron	ENST00000406323	ENST00000406880		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZNRF3	chr22	29383189	+	FAM19A5	chr22	49042409	+
Frame-shit	ENST00000261880	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000261880	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000261880	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000261880	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-intron	ENST00000261880	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-3CDS	ENST00000538028	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-3CDS	ENST00000538028	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-5UTR	ENST00000538028	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-5UTR	ENST00000538028	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-intron	ENST00000538028	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000561452	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000561452	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000561452	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000561452	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-intron	ENST00000561452	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000542650	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000542650	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000542650	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000542650	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-intron	ENST00000542650	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-01A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000336665	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
5CDS-intron	ENST00000336665	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
Frame-shit	ENST00000304032	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
5CDS-intron	ENST00000304032	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
intron-3CDS	ENST00000409538	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
intron-intron	ENST00000409538	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
intron-3CDS	ENST00000428334	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
intron-intron	ENST00000428334	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
Frame-shit	ENST00000409457	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
5CDS-intron	ENST00000409457	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2H-01A	AGAP1	chr2	236403493	+	TRHDE	chr12	72936071	+
In-frame	ENST00000257897	ENST00000261263		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AGAP2	chr12	58123422	-	RAB21	chr12	72179311	+
In-frame	ENST00000547588	ENST00000261263		TCGA	RV	SARC	TCGA-3B-A9HS-01A	AGAP2	chr12	58123422	-	RAB21	chr12	72179311	+
Frame-shit	ENST00000329255	ENST00000342310		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ALX4	chr11	44331147	-	LMX1A	chr1	165183050	-
Frame-shit	ENST00000329255	ENST00000294816		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ALX4	chr11	44331147	-	LMX1A	chr1	165183050	-
Frame-shit	ENST00000329255	ENST00000367893		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ALX4	chr11	44331147	-	LMX1A	chr1	165183050	-
5CDS-intron	ENST00000329255	ENST00000489443		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ALX4	chr11	44331147	-	LMX1A	chr1	165183050	-
Frame-shit	ENST00000317829	ENST00000299001		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
5CDS-intron	ENST00000317829	ENST00000537419		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
Frame-shit	ENST00000317837	ENST00000299001		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
5CDS-intron	ENST00000317837	ENST00000537419		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
Frame-shit	ENST00000433060	ENST00000299001		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
5CDS-intron	ENST00000433060	ENST00000537419		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
intron-3CDS	ENST00000539727	ENST00000299001		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
intron-intron	ENST00000539727	ENST00000537419		TCGA	RV	SARC	TCGA-KD-A5QS-01A	AMOTL1	chr11	94501726	+	PIWIL4	chr11	94340605	+
Frame-shit	ENST00000520381	ENST00000266674		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000520381	ENST00000536515		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000520381	ENST00000540815		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000262215	ENST00000266674		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000262215	ENST00000536515		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000262215	ENST00000540815		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000517955	ENST00000266674		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000517955	ENST00000536515		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000517955	ENST00000540815		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000518230	ENST00000266674		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000518230	ENST00000536515		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000518230	ENST00000540815		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ARFGEF1	chr8	68163534	-	LGR5	chr12	71898394	+
In-frame	ENST00000368194	ENST00000368445		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000368194	ENST00000368449		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000368194	ENST00000448116		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000368194	ENST00000368450		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000368194	ENST00000368453		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000368194	ENST00000606391		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000368194	ENST00000490667		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-3CDS	ENST00000487682	ENST00000368445		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000487682	ENST00000368449		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000487682	ENST00000448116		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000487682	ENST00000368450		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000487682	ENST00000368453		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000487682	ENST00000606391		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000487682	ENST00000490667		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
In-frame	ENST00000361409	ENST00000368445		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000361409	ENST00000368449		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000361409	ENST00000448116		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000361409	ENST00000368450		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000361409	ENST00000368453		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000361409	ENST00000606391		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000361409	ENST00000490667		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-3CDS	ENST00000315174	ENST00000368445		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000315174	ENST00000368449		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000315174	ENST00000448116		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000315174	ENST00000368450		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000315174	ENST00000368453		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000315174	ENST00000606391		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
intron-intron	ENST00000315174	ENST00000490667		TCGA	RV	SARC	TCGA-DX-AB2V-01A	ARHGEF11	chr1	157014091	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000366603	ENST00000367261		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-intron	ENST00000366603	ENST00000367259		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-intron	ENST00000366603	ENST00000435533		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-5UTR	ENST00000264183	ENST00000367261		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-intron	ENST00000264183	ENST00000367259		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-intron	ENST00000264183	ENST00000435533		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-5UTR	ENST00000349213	ENST00000367261		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-intron	ENST00000349213	ENST00000367259		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-intron	ENST00000349213	ENST00000435533		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
intron-5UTR	ENST00000494543	ENST00000367261		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
intron-intron	ENST00000494543	ENST00000367259		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
intron-intron	ENST00000494543	ENST00000435533		TCGA	RV	SARC	TCGA-DX-A8BV-01A	ARID4B	chr1	235490229	-	KLHL12	chr1	202894335	-
5CDS-5UTR	ENST00000369162	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369162	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369162	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369162	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369162	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000522650	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000522650	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000522650	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000522650	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000522650	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369143	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369143	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369143	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369143	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369143	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ASCC3	chr6	101315784	-	WASF1	chr6	110448832	-
Frame-shit	ENST00000348959	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000348959	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000348959	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000348959	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000348959	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000348959	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000261173	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000261173	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000261173	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000261173	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000261173	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000261173	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000359142	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000359142	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000359142	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000359142	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000359142	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000359142	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000428670	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
In-frame	ENST00000428670	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000428670	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000428670	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000428670	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
5CDS-intron	ENST00000428670	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000393164	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
intron-3CDS	ENST00000393164	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
intron-intron	ENST00000393164	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
intron-intron	ENST00000393164	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
intron-intron	ENST00000393164	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
intron-intron	ENST00000393164	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ATP2B1	chr12	90049456	-	EXOC4	chr7	133749044	+
Frame-shit	ENST00000568104	ENST00000566621		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
Frame-shit	ENST00000568104	ENST00000437989		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
Frame-shit	ENST00000568104	ENST00000569302		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-5UTR	ENST00000568104	ENST00000567389		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-5UTR	ENST00000568104	ENST00000562877		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-5UTR	ENST00000568104	ENST00000338183		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-intron	ENST00000568104	ENST00000565792		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-intron	ENST00000568104	ENST00000562489		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-intron	ENST00000568104	ENST00000563167		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
Frame-shit	ENST00000245157	ENST00000566621		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
Frame-shit	ENST00000245157	ENST00000437989		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
Frame-shit	ENST00000245157	ENST00000569302		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-5UTR	ENST00000245157	ENST00000567389		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-5UTR	ENST00000245157	ENST00000562877		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-5UTR	ENST00000245157	ENST00000338183		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-intron	ENST00000245157	ENST00000565792		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-intron	ENST00000245157	ENST00000562489		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
5CDS-intron	ENST00000245157	ENST00000563167		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-3CDS	ENST00000561951	ENST00000566621		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-3CDS	ENST00000561951	ENST00000437989		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-3CDS	ENST00000561951	ENST00000569302		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-5UTR	ENST00000561951	ENST00000567389		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-5UTR	ENST00000561951	ENST00000562877		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-5UTR	ENST00000561951	ENST00000338183		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-intron	ENST00000561951	ENST00000565792		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-intron	ENST00000561951	ENST00000562489		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
intron-intron	ENST00000561951	ENST00000563167		TCGA	RV	SARC	TCGA-WP-A9GB-01A	BBS2	chr16	56553658	-	C15orf41	chr15	36946299	+
In-frame	ENST00000589222	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000589222	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000589222	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000589222	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000589222	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000589222	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000589222	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000589222	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000589222	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000589222	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000589222	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000589222	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000589222	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000407086	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000407086	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000407086	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000407086	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000407086	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000407086	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000407086	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000390652	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000390652	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000390652	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000390652	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000390652	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000390652	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000390652	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000408905	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000408905	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000408905	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000408905	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000408905	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000408905	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000408905	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588462	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588462	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588462	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588462	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000588462	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588462	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588462	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000585744	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000585744	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000585744	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000585744	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000585744	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000585744	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000585744	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000588874	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588874	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588874	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588874	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-intron	ENST00000588874	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588874	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
5CDS-5UTR	ENST00000588874	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000389960		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000316356		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000528231		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000527523		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000524452		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000359152		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-3CDS	ENST00000585812	ENST00000354566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-5UTR	ENST00000585812	ENST00000525702		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-5UTR	ENST00000585812	ENST00000525423		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-5UTR	ENST00000585812	ENST00000529581		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-intron	ENST00000585812	ENST00000389958		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-5UTR	ENST00000585812	ENST00000533892		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
intron-5UTR	ENST00000585812	ENST00000528566		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	BCAS3	chr17	59161925	+	SYTL2	chr11	85425550	-
In-frame	ENST00000261714	ENST00000340001		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
In-frame	ENST00000261714	ENST00000453985		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
In-frame	ENST00000261714	ENST00000370732		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5CDS-intron	ENST00000261714	ENST00000482072		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5CDS-intron	ENST00000261714	ENST00000495634		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
Frame-shit	ENST00000394819	ENST00000340001		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
Frame-shit	ENST00000394819	ENST00000453985		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
Frame-shit	ENST00000394819	ENST00000370732		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5CDS-intron	ENST00000394819	ENST00000482072		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5CDS-intron	ENST00000394819	ENST00000495634		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5UTR-3CDS	ENST00000582669	ENST00000340001		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5UTR-3CDS	ENST00000582669	ENST00000453985		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5UTR-3CDS	ENST00000582669	ENST00000370732		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5UTR-intron	ENST00000582669	ENST00000482072		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5UTR-intron	ENST00000582669	ENST00000495634		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	BLMH	chr17	28612406	-	ABCA9	chr17	66992155	-
5CDS-3UTR	ENST00000179259	ENST00000255030		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5CDS-5UTR	ENST00000179259	ENST00000473196		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5CDS-3UTR	ENST00000179259	ENST00000437342		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5CDS-3UTR	ENST00000179259	ENST00000368112		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5CDS-intron	ENST00000179259	ENST00000368111		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5CDS-3UTR	ENST00000179259	ENST00000368110		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5CDS-intron	ENST00000179259	ENST00000343919		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-3UTR	ENST00000537251	ENST00000255030		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-5UTR	ENST00000537251	ENST00000473196		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-3UTR	ENST00000537251	ENST00000437342		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-3UTR	ENST00000537251	ENST00000368112		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-intron	ENST00000537251	ENST00000368111		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-3UTR	ENST00000537251	ENST00000368110		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
intron-intron	ENST00000537251	ENST00000343919		TCGA	RV	SARC	TCGA-DX-A240-01A	C12orf5	chr12	4430469	+	CRP	chr1	159682584	-
5UTR-intron	ENST00000460742	ENST00000421834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000370769		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000312431		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000370754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000370788		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000361203		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000244364		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000446842		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000340834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000370765		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000460742	ENST00000518935		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000421834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000370769		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000312431		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000370754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000370788		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000361203		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000244364		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000446842		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000340834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000370765		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000259983	ENST00000518935		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000421834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000370769		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000312431		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000370754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000370788		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000361203		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000244364		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000446842		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000340834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000370765		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000426700	ENST00000518935		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000421834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000370769		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000312431		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000370754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000370788		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000361203		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000244364		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000446842		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000340834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000370765		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000467832	ENST00000518935		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000421834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000370769		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000312431		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000370754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000370788		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000361203		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000244364		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000446842		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000340834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000370765		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
5UTR-intron	ENST00000379586	ENST00000518935		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000421834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000370769		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000312431		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000370754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000370788		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000361203		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000244364		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000446842		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000340834		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000370765		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
intron-intron	ENST00000503680	ENST00000518935		TCGA	RV	SARC	TCGA-PC-A5DN-01A	C6orf52	chr6	10694727	-	DST	chr6	56765419	-
In-frame	ENST00000371073	ENST00000300896		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000371073	ENST00000592339		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000371073	ENST00000393003		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000371073	ENST00000586881		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
In-frame	ENST00000290039	ENST00000300896		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000290039	ENST00000592339		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000290039	ENST00000393003		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
5CDS-intron	ENST00000290039	ENST00000586881		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
3UTR-3CDS	ENST00000495994	ENST00000300896		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
3UTR-intron	ENST00000495994	ENST00000592339		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
3UTR-intron	ENST00000495994	ENST00000393003		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
3UTR-intron	ENST00000495994	ENST00000586881		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CACHD1	chr1	65107652	+	USP32	chr17	58422969	-
Frame-shit	ENST00000382275	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382275	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382275	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382275	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000382275	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000507958	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000507958	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000507958	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000507958	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000507958	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000502796	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000502796	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000502796	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000502796	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000502796	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000511273	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
In-frame	ENST00000511273	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000511273	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000511273	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000511273	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000274170	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
In-frame	ENST00000274170	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000274170	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000274170	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000274170	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000506372	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
In-frame	ENST00000506372	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000506372	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000506372	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000506372	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510297	ENST00000310581		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510297	ENST00000296820		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510297	ENST00000334602		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510297	ENST00000508104		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
intron-intron	ENST00000510297	ENST00000522877		TCGA	RV	SARC	TCGA-DX-AB2G-01A	CDH18	chr5	19612543	-	TERT	chr5	1282739	-
Frame-shit	ENST00000373233	ENST00000262873		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
5CDS-intron	ENST00000373233	ENST00000481922		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
Frame-shit	ENST00000309279	ENST00000262873		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
5CDS-intron	ENST00000309279	ENST00000481922		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
intron-3CDS	ENST00000373222	ENST00000262873		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
intron-intron	ENST00000373222	ENST00000481922		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
intron-3CDS	ENST00000480022	ENST00000262873		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
intron-intron	ENST00000480022	ENST00000481922		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CHD6	chr20	40068640	-	MYH7B	chr20	33583139	+
5CDS-intron	ENST00000607772	ENST00000477822		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000607772	ENST00000229758		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000607772	ENST00000367241		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000479339	ENST00000477822		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000479339	ENST00000229758		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000479339	ENST00000367241		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000433165	ENST00000477822		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000433165	ENST00000229758		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000433165	ENST00000367241		TCGA	RV	SARC	TCGA-KD-A5QU-01A	CNKSR3	chr6	154731477	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000607772	ENST00000418604		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
5CDS-5UTR	ENST00000607772	ENST00000303958		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
5CDS-5UTR	ENST00000607772	ENST00000361621		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
5CDS-intron	ENST00000607772	ENST00000466486		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-5UTR	ENST00000479339	ENST00000418604		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-5UTR	ENST00000479339	ENST00000303958		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-5UTR	ENST00000479339	ENST00000361621		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-intron	ENST00000479339	ENST00000466486		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-5UTR	ENST00000433165	ENST00000418604		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-5UTR	ENST00000433165	ENST00000303958		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-5UTR	ENST00000433165	ENST00000361621		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
intron-intron	ENST00000433165	ENST00000466486		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CNKSR3	chr6	154831197	-	PLP1	chrX	103031781	+
5CDS-5UTR	ENST00000262367	ENST00000431639		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000262367	ENST00000316024		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000262367	ENST00000457584		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000262367	ENST00000396463		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000262367	ENST00000534050		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000382070	ENST00000431639		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000382070	ENST00000316024		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000382070	ENST00000457584		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000382070	ENST00000396463		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000382070	ENST00000534050		TCGA	RV	SARC	TCGA-HB-A2OT-01A	CREBBP	chr16	3860604	-	WRAP53	chr17	7591966	+
5CDS-5UTR	ENST00000398519	ENST00000301659		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CSNK1D	chr17	80210310	-	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000314028	ENST00000301659		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CSNK1D	chr17	80210310	-	GSDMA	chr17	38121936	+
5CDS-5UTR	ENST00000392334	ENST00000301659		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CSNK1D	chr17	80210310	-	GSDMA	chr17	38121936	+
5UTR-5UTR	ENST00000578904	ENST00000301659		TCGA	RV	SARC	TCGA-DX-A1L2-01A	CSNK1D	chr17	80210310	-	GSDMA	chr17	38121936	+
5UTR-3CDS	ENST00000339788	ENST00000264669		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
5UTR-5UTR	ENST00000339788	ENST00000513658		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
5UTR-3CDS	ENST00000320816	ENST00000264669		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
5UTR-5UTR	ENST00000320816	ENST00000513658		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
5UTR-3CDS	ENST00000545653	ENST00000264669		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
5UTR-5UTR	ENST00000545653	ENST00000513658		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000509337	ENST00000264669		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000509337	ENST00000513658		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000512525	ENST00000264669		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000512525	ENST00000513658		TCGA	RV	SARC	TCGA-DX-AB2P-01A	DAB2	chr5	39424906	-	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000315677	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000315677	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000581527	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000581527	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400147	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400147	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400149	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400149	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400155	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400155	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400150	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400150	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000584874	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000584874	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000534970	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000534970	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000539435	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000539435	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000581699	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000581699	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400145	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000400145	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000515196	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000515196	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5UTR-5UTR	ENST00000478161	ENST00000319888		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
5UTR-5UTR	ENST00000478161	ENST00000574538		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DLGAP1	chr18	3814059	-	METTL4	chr18	2567653	-
Frame-shit	ENST00000251157	ENST00000378165		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000251157	ENST00000378150		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000251157	ENST00000535341		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-intron	ENST00000251157	ENST00000466201		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-5UTR	ENST00000251157	ENST00000540259		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000340370	ENST00000378165		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000340370	ENST00000378150		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000340370	ENST00000535341		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-intron	ENST00000340370	ENST00000466201		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-5UTR	ENST00000340370	ENST00000540259		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
intron-3CDS	ENST00000489185	ENST00000378165		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
intron-3CDS	ENST00000489185	ENST00000378150		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
intron-3CDS	ENST00000489185	ENST00000535341		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
intron-intron	ENST00000489185	ENST00000466201		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
intron-5UTR	ENST00000489185	ENST00000540259		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000404627	ENST00000378165		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000404627	ENST00000378150		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
Frame-shit	ENST00000404627	ENST00000535341		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-intron	ENST00000404627	ENST00000466201		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-5UTR	ENST00000404627	ENST00000540259		TCGA	RV	SARC	TCGA-IF-A4AK-01A	DOCK7	chr1	63153898	-	NMT2	chr10	15183556	-
5CDS-5UTR	ENST00000531863	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
5CDS-5UTR	ENST00000532677	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
5CDS-5UTR	ENST00000453114	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
5CDS-5UTR	ENST00000360510	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
5CDS-5UTR	ENST00000541961	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
5CDS-5UTR	ENST00000530165	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
intron-5UTR	ENST00000533799	ENST00000341785		TCGA	RV	SARC	TCGA-DX-A7EU-01A	DPP3	chr11	66249941	+	FAM163A	chr1	179776933	+
intron-3CDS	ENST00000496972	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-3CDS	ENST00000496972	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-3CDS	ENST00000496972	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-intron	ENST00000496972	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-intron	ENST00000496972	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-intron	ENST00000496972	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000405222	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000405222	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000405222	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000405222	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000405222	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000405222	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407661	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407661	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407661	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407661	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407661	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407661	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000406818	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000406818	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000406818	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000406818	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000406818	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000406818	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407038	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407038	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407038	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407038	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407038	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407038	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000404103	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000404103	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000404103	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000404103	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000404103	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000404103	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407186	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407186	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000407186	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407186	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407186	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000407186	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000288642	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000288642	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000288642	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000288642	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000288642	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000288642	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000545439	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000545439	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-3CDS	ENST00000545439	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000545439	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000545439	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
5UTR-intron	ENST00000545439	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-3CDS	ENST00000472690	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-3CDS	ENST00000472690	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-3CDS	ENST00000472690	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-intron	ENST00000472690	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-intron	ENST00000472690	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
intron-intron	ENST00000472690	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DTNB	chr2	25896255	-	EXOC4	chr7	133160082	+
Frame-shit	ENST00000360971	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ENPP1	chr6	132129415	+	INSR	chr19	7152938	-
Frame-shit	ENST00000360971	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ENPP1	chr6	132129415	+	INSR	chr19	7152938	-
5UTR-3CDS	ENST00000378720	ENST00000322475		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-3CDS	ENST00000378720	ENST00000280057		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-intron	ENST00000378720	ENST00000497449		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-3CDS	ENST00000378697	ENST00000322475		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-3CDS	ENST00000378697	ENST00000280057		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-intron	ENST00000378697	ENST00000497449		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-3CDS	ENST00000495654	ENST00000322475		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-3CDS	ENST00000495654	ENST00000280057		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
5UTR-intron	ENST00000495654	ENST00000497449		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ESD	chr13	47367532	-	FAM124A	chr13	51825604	+
In-frame	ENST00000277165	ENST00000374263		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000277165	ENST00000374270		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000277165	ENST00000374264		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000277165	ENST00000482851		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000375389	ENST00000374263		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000375389	ENST00000374270		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000375389	ENST00000374264		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000375389	ENST00000482851		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000340893	ENST00000374263		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000340893	ENST00000374270		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000340893	ENST00000374264		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000340893	ENST00000482851		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000333936	ENST00000374263		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000333936	ENST00000374270		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
In-frame	ENST00000333936	ENST00000374264		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000333936	ENST00000482851		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000475933	ENST00000374263		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000475933	ENST00000374270		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000475933	ENST00000374264		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
intron-intron	ENST00000475933	ENST00000482851		TCGA	RV	SARC	TCGA-DX-AATS-01A	FAM120A	chr9	96289524	+	SUSD1	chr9	114804240	-
Frame-shit	ENST00000064778	ENST00000263650		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000064778	ENST00000389989		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000064778	ENST00000525498		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000064778	ENST00000542243		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000064778	ENST00000348039		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000064778	ENST00000478260		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000064778	ENST00000528124		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000450446	ENST00000263650		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000450446	ENST00000389989		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000450446	ENST00000525498		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000450446	ENST00000542243		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000450446	ENST00000348039		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000450446	ENST00000478260		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000450446	ENST00000528124		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000356467	ENST00000263650		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000356467	ENST00000389989		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000356467	ENST00000525498		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000356467	ENST00000542243		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000356467	ENST00000348039		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000356467	ENST00000478260		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
5CDS-intron	ENST00000356467	ENST00000528124		TCGA	RV	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3129175	-
Frame-shit	ENST00000372572	ENST00000262241		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000372572	ENST00000570597		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000372573	ENST00000262241		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000372573	ENST00000570597		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000361346	ENST00000262241		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000361346	ENST00000570597		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000361776	ENST00000262241		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000361776	ENST00000570597		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000545068	ENST00000262241		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
Frame-shit	ENST00000545068	ENST00000570597		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
intron-3CDS	ENST00000372571	ENST00000262241		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
intron-3CDS	ENST00000372571	ENST00000570597		TCGA	RV	SARC	TCGA-DX-AB2O-01A	FOXJ3	chr1	42730786	-	RCOR1	chr14	103187344	+
5UTR-3CDS	ENST00000299293	ENST00000455537		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
5UTR-intron	ENST00000299293	ENST00000286452		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000549921	ENST00000455537		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
intron-intron	ENST00000549921	ENST00000286452		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000550389	ENST00000455537		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
intron-intron	ENST00000550389	ENST00000286452		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
intron-3CDS	ENST00000397997	ENST00000455537		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
intron-intron	ENST00000397997	ENST00000286452		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	KIF5A	chr12	57957222	+
5UTR-3CDS	ENST00000299293	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000299293	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000299293	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000299293	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000549921	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000549921	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000549921	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000549921	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000550389	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000550389	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000550389	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000550389	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000397997	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000397997	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000397997	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000397997	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FRS2	chr12	69864310	+	SBNO1	chr12	123834988	-
5CDS-intron	ENST00000247815	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000247815	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HELB	chr12	66704388	+	MGAT4C	chr12	86889092	-
5CDS-intron	ENST00000330710	ENST00000557165		TCGA	RV	SARC	TCGA-K1-A42X-01A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000330710	ENST00000389879		TCGA	RV	SARC	TCGA-K1-A42X-01A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000330710	ENST00000555049		TCGA	RV	SARC	TCGA-K1-A42X-01A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000357223	ENST00000557165		TCGA	RV	SARC	TCGA-K1-A42X-01A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000357223	ENST00000389879		TCGA	RV	SARC	TCGA-K1-A42X-01A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000357223	ENST00000555049		TCGA	RV	SARC	TCGA-K1-A42X-01A	HHIPL1	chr14	100111799	+	CCNK	chr14	99973413	+
In-frame	ENST00000268182	ENST00000558480		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
In-frame	ENST00000268182	ENST00000419573		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
5CDS-5UTR	ENST00000268182	ENST00000560334		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
5CDS-intron	ENST00000268182	ENST00000394745		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-3CDS	ENST00000560738	ENST00000558480		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-3CDS	ENST00000560738	ENST00000419573		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-5UTR	ENST00000560738	ENST00000560334		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-intron	ENST00000560738	ENST00000394745		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-3CDS	ENST00000560020	ENST00000558480		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-3CDS	ENST00000560020	ENST00000419573		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-5UTR	ENST00000560020	ENST00000560334		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
intron-intron	ENST00000560020	ENST00000394745		TCGA	RV	SARC	TCGA-FX-A3TO-01A	IQGAP1	chr15	90934105	+	RASGRF1	chr15	79298776	-
Frame-shit	ENST00000315757	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
Frame-shit	ENST00000315757	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
5CDS-3UTR	ENST00000315757	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
Frame-shit	ENST00000423218	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
Frame-shit	ENST00000423218	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
5CDS-3UTR	ENST00000423218	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
intron-3CDS	ENST00000562826	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
intron-3CDS	ENST00000562826	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
intron-3UTR	ENST00000562826	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84639236	+
In-frame	ENST00000360029	ENST00000399820		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KCTD8	chr4	44449580	-	WDR19	chr4	39267683	+
In-frame	ENST00000360029	ENST00000288634		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KCTD8	chr4	44449580	-	WDR19	chr4	39267683	+
5CDS-intron	ENST00000360029	ENST00000506503		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KCTD8	chr4	44449580	-	WDR19	chr4	39267683	+
5CDS-intron	ENST00000360029	ENST00000515631		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KCTD8	chr4	44449580	-	WDR19	chr4	39267683	+
In-frame	ENST00000251691	ENST00000265350		TCGA	RV	SARC	TCGA-DX-A6BH-01A	KIAA1244	chr6	138564131	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000251691	ENST00000467535		TCGA	RV	SARC	TCGA-DX-A6BH-01A	KIAA1244	chr6	138564131	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000251691	ENST00000409312		TCGA	RV	SARC	TCGA-DX-A6BH-01A	KIAA1244	chr6	138564131	+	MED20	chr6	41877260	-
5CDS-5UTR	ENST00000251691	ENST00000409060		TCGA	RV	SARC	TCGA-DX-A6BH-01A	KIAA1244	chr6	138564131	+	MED20	chr6	41877260	-
In-frame	ENST00000378814	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-intron	ENST00000378814	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378814	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378814	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378814	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
In-frame	ENST00000259711	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-intron	ENST00000259711	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000259711	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000259711	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000259711	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
In-frame	ENST00000378843	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-intron	ENST00000378843	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378843	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378843	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378843	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
In-frame	ENST00000378826	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-intron	ENST00000378826	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378826	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378826	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378826	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
In-frame	ENST00000378816	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-intron	ENST00000378816	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378816	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378816	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000378816	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
In-frame	ENST00000502704	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-intron	ENST00000502704	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000502704	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000502704	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
5CDS-3UTR	ENST00000502704	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
intron-3CDS	ENST00000503342	ENST00000261427		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
intron-intron	ENST00000503342	ENST00000295963		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
intron-3UTR	ENST00000503342	ENST00000438068		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
intron-3UTR	ENST00000503342	ENST00000503368		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
intron-3UTR	ENST00000503342	ENST00000445950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	KIF13A	chr6	17987285	-	UBE2K	chr4	39776454	+
Frame-shit	ENST00000375712	ENST00000401642		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	KIF3B	chr20	30898984	+	SCFD2	chr4	53787037	-
Frame-shit	ENST00000375712	ENST00000388940		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	KIF3B	chr20	30898984	+	SCFD2	chr4	53787037	-
Frame-shit	ENST00000418717	ENST00000401642		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	KIF3B	chr20	30898984	+	SCFD2	chr4	53787037	-
Frame-shit	ENST00000418717	ENST00000388940		TCGA	RV	SARC	TCGA-DX-AB2Z-01A	KIF3B	chr20	30898984	+	SCFD2	chr4	53787037	-
5CDS-5UTR	ENST00000377844	ENST00000443950		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000377844	ENST00000544000		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000377844	ENST00000357065		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000377844	ENST00000356053		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000377844	ENST00000337970		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000377844	ENST00000498176		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000545028	ENST00000443950		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000545028	ENST00000544000		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000545028	ENST00000357065		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000545028	ENST00000356053		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000545028	ENST00000337970		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
5CDS-5UTR	ENST00000545028	ENST00000498176		TCGA	RV	SARC	TCGA-PC-A5DK-01A	KLHL1	chr13	70370870	-	HNRNPF	chr10	43892038	-
3UTR-3CDS	ENST00000500890	ENST00000454872		TCGA	RV	SARC	TCGA-VT-A80G-01A	LRAT	chr4	155557548	+	NAALADL2	chr3	174814580	+
3UTR-3UTR	ENST00000500890	ENST00000473253		TCGA	RV	SARC	TCGA-VT-A80G-01A	LRAT	chr4	155557548	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000507827	ENST00000454872		TCGA	RV	SARC	TCGA-VT-A80G-01A	LRAT	chr4	155557548	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000507827	ENST00000473253		TCGA	RV	SARC	TCGA-VT-A80G-01A	LRAT	chr4	155557548	+	NAALADL2	chr3	174814580	+
intron-3CDS	ENST00000336356	ENST00000454872		TCGA	RV	SARC	TCGA-VT-A80G-01A	LRAT	chr4	155557548	+	NAALADL2	chr3	174814580	+
intron-3UTR	ENST00000336356	ENST00000473253		TCGA	RV	SARC	TCGA-VT-A80G-01A	LRAT	chr4	155557548	+	NAALADL2	chr3	174814580	+
Frame-shit	ENST00000462284	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000356290	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000540827	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000258149	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000428863	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000393412	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000258148	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000544561	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000393410	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000393413	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000517852	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000545204	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000350057	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000360430	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000299252	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000348801	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000478070	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
intron-3CDS	ENST00000544125	ENST00000301180		TCGA	RV	SARC	TCGA-DX-AB2G-01A	MDM2	chr12	69207408	+	DIP2B	chr12	51053977	+
Frame-shit	ENST00000462284	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000462284	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000462284	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000462284	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000462284	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000462284	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000356290	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000356290	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000356290	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000356290	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000356290	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000356290	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000540827	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000540827	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000540827	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000540827	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000540827	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000540827	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000258149	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000258149	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258149	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258149	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258149	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258149	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000428863	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000428863	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000428863	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000428863	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000428863	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000428863	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000393412	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000393412	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393412	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393412	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393412	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393412	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000258148	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000258148	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258148	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258148	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258148	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000258148	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000544561	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000544561	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000544561	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000544561	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000544561	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000544561	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000393410	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000393410	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000393410	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000393410	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000393410	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000393410	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000393413	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000393413	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393413	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393413	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393413	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000393413	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000517852	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000517852	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000517852	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000517852	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000517852	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000517852	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000545204	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000545204	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000545204	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000545204	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000545204	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000545204	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000350057	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000350057	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000350057	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000350057	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000350057	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000350057	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000360430	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000360430	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000360430	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000360430	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000360430	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000360430	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000299252	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
Frame-shit	ENST00000299252	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000299252	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000299252	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000299252	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
5CDS-intron	ENST00000299252	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000348801	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000348801	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000348801	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000348801	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000348801	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000348801	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000478070	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000478070	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000478070	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000478070	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000478070	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000478070	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000544125	ENST00000283228		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000544125	ENST00000440835		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000544125	ENST00000537619		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000544125	ENST00000378778		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000544125	ENST00000342084		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-intron	ENST00000544125	ENST00000549308		TCGA	RV	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69207408	+	PTPRR	chr12	71078563	-
intron-3CDS	ENST00000010404	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-intron	ENST00000010404	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
5UTR-3CDS	ENST00000396210	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
5UTR-intron	ENST00000396210	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
5UTR-3CDS	ENST00000535309	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
5UTR-intron	ENST00000535309	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-3CDS	ENST00000540056	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-intron	ENST00000540056	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-3CDS	ENST00000396209	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-intron	ENST00000396209	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-3CDS	ENST00000396207	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-intron	ENST00000396207	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-3CDS	ENST00000359720	ENST00000356083		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
intron-intron	ENST00000359720	ENST00000477421		TCGA	RV	SARC	TCGA-DX-A2J1-01A	MGST1	chr12	16500644	+	COL27A1	chr9	117044557	+
In-frame	ENST00000395811	ENST00000326005		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000395811	ENST00000560258		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000395811	ENST00000559753		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000395811	ENST00000560837		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000444976	ENST00000326005		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000444976	ENST00000560258		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000444976	ENST00000559753		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000444976	ENST00000560837		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000395804	ENST00000326005		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000395804	ENST00000560258		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000395804	ENST00000559753		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000395804	ENST00000560837		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000341712	ENST00000326005		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000341712	ENST00000560258		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000341712	ENST00000559753		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000341712	ENST00000560837		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000395806	ENST00000326005		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000395806	ENST00000560258		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000395806	ENST00000559753		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
5CDS-5UTR	ENST00000395806	ENST00000560837		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
3UTR-3CDS	ENST00000395807	ENST00000326005		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
3UTR-3CDS	ENST00000395807	ENST00000560258		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
3UTR-5UTR	ENST00000395807	ENST00000559753		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
3UTR-5UTR	ENST00000395807	ENST00000560837		TCGA	RV	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64982748	-
In-frame	ENST00000317173	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000317173	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000317173	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000317173	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000317173	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000317173	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000317173	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000441698	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000441698	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000441698	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000441698	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000441698	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000441698	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000441698	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000518255	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000518255	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
In-frame	ENST00000518255	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000518255	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000518255	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000518255	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
5CDS-intron	ENST00000518255	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000521209	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000521209	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000521209	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000521209	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000521209	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000521209	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000521209	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000528246	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000528246	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000528246	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000528246	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000528246	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000528246	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000528246	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000382490	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000382490	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000382490	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000382490	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000382490	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000382490	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000382490	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000517594	ENST00000361111		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000517594	ENST00000359758		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-3CDS	ENST00000517594	ENST00000297498		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000517594	ENST00000458665		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000517594	ENST00000528168		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000517594	ENST00000398462		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
intron-intron	ENST00000517594	ENST00000317900		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MSRA	chr8	9912168	+	SPAG11B	chr8	7320381	-
3UTR-3CDS	ENST00000476359	ENST00000432116		TCGA	RV	SARC	TCGA-DX-A48U-01A	NLGN4Y	chrY	16835149	+	SHISA6	chr17	11459057	+
3UTR-3CDS	ENST00000476359	ENST00000441885		TCGA	RV	SARC	TCGA-DX-A48U-01A	NLGN4Y	chrY	16835149	+	SHISA6	chr17	11459057	+
3UTR-3CDS	ENST00000476359	ENST00000409168		TCGA	RV	SARC	TCGA-DX-A48U-01A	NLGN4Y	chrY	16835149	+	SHISA6	chr17	11459057	+
In-frame	ENST00000297967	ENST00000432116		TCGA	RV	SARC	TCGA-DX-A48U-01A	NLGN4Y	chrY	16835149	+	SHISA6	chr17	11459057	+
In-frame	ENST00000297967	ENST00000441885		TCGA	RV	SARC	TCGA-DX-A48U-01A	NLGN4Y	chrY	16835149	+	SHISA6	chr17	11459057	+
In-frame	ENST00000297967	ENST00000409168		TCGA	RV	SARC	TCGA-DX-A48U-01A	NLGN4Y	chrY	16835149	+	SHISA6	chr17	11459057	+
5UTR-5UTR	ENST00000472647	ENST00000421797		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5UTR-5UTR	ENST00000472647	ENST00000429546		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5UTR-5UTR	ENST00000472647	ENST00000352689		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5UTR-intron	ENST00000472647	ENST00000498778		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000367811	ENST00000421797		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000367811	ENST00000429546		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5CDS-5UTR	ENST00000367811	ENST00000352689		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
5CDS-intron	ENST00000367811	ENST00000498778		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000469474	ENST00000421797		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000469474	ENST00000429546		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
intron-5UTR	ENST00000469474	ENST00000352689		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
intron-intron	ENST00000469474	ENST00000498778		TCGA	RV	SARC	TCGA-DX-A1L2-01A	NME7	chr1	169336946	-	MKLN1	chr7	131060183	+
In-frame	ENST00000354179	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	NSD1	chr5	176684152	+	FGF18	chr5	170876151	+
In-frame	ENST00000439151	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	NSD1	chr5	176684152	+	FGF18	chr5	170876151	+
In-frame	ENST00000347982	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	NSD1	chr5	176684152	+	FGF18	chr5	170876151	+
In-frame	ENST00000361032	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	NSD1	chr5	176684152	+	FGF18	chr5	170876151	+
intron-3CDS	ENST00000511258	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	NSD1	chr5	176684152	+	FGF18	chr5	170876151	+
Frame-shit	ENST00000287437	ENST00000378204		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126163519	+	EXT1	chr8	118817132	-
Frame-shit	ENST00000522563	ENST00000378204		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126163519	+	EXT1	chr8	118817132	-
Frame-shit	ENST00000517315	ENST00000378204		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126163519	+	EXT1	chr8	118817132	-
intron-3CDS	ENST00000521460	ENST00000378204		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126163519	+	EXT1	chr8	118817132	-
In-frame	ENST00000392876	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000392876	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000392876	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000392876	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000392876	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000392876	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000465502	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000465502	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000465502	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000465502	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000465502	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000465502	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	NT5DC3	chr12	104208715	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000335742	ENST00000359299		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	PALLD	chr4	169553051	+	ANXA10	chr4	169083679	+
intron-3CDS	ENST00000261509	ENST00000359299		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	PALLD	chr4	169553051	+	ANXA10	chr4	169083679	+
intron-3CDS	ENST00000505667	ENST00000359299		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	PALLD	chr4	169553051	+	ANXA10	chr4	169083679	+
intron-3CDS	ENST00000333488	ENST00000359299		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	PALLD	chr4	169553051	+	ANXA10	chr4	169083679	+
5UTR-3CDS	ENST00000512127	ENST00000359299		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	PALLD	chr4	169553051	+	ANXA10	chr4	169083679	+
intron-3CDS	ENST00000507735	ENST00000359299		TCGA	RV	SARC	TCGA-DX-A8BJ-01A	PALLD	chr4	169553051	+	ANXA10	chr4	169083679	+
5CDS-5UTR	ENST00000267460	ENST00000345097		TCGA	RV	SARC	TCGA-X9-A971-01A	PELI2	chr14	56585455	+	FOXN3	chr14	89878834	-
5CDS-5UTR	ENST00000267460	ENST00000261302		TCGA	RV	SARC	TCGA-X9-A971-01A	PELI2	chr14	56585455	+	FOXN3	chr14	89878834	-
5CDS-5UTR	ENST00000267460	ENST00000557258		TCGA	RV	SARC	TCGA-X9-A971-01A	PELI2	chr14	56585455	+	FOXN3	chr14	89878834	-
5CDS-5UTR	ENST00000267460	ENST00000555353		TCGA	RV	SARC	TCGA-X9-A971-01A	PELI2	chr14	56585455	+	FOXN3	chr14	89878834	-
5CDS-intron	ENST00000267460	ENST00000555658		TCGA	RV	SARC	TCGA-X9-A971-01A	PELI2	chr14	56585455	+	FOXN3	chr14	89878834	-
5CDS-5UTR	ENST00000275034	ENST00000369981		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
5CDS-5UTR	ENST00000275034	ENST00000369985		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
5CDS-5UTR	ENST00000275034	ENST00000369977		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
5CDS-intron	ENST00000275034	ENST00000369975		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
5CDS-intron	ENST00000275034	ENST00000462633		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
intron-5UTR	ENST00000479165	ENST00000369981		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
intron-5UTR	ENST00000479165	ENST00000369985		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
intron-5UTR	ENST00000479165	ENST00000369977		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
intron-intron	ENST00000479165	ENST00000369975		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
intron-intron	ENST00000479165	ENST00000462633		TCGA	RV	SARC	TCGA-DX-A7EN-01A	PHIP	chr6	79770195	-	MYO6	chr6	76527218	+
In-frame	ENST00000228347	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
In-frame	ENST00000228347	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
In-frame	ENST00000228347	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
5CDS-intron	ENST00000228347	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
In-frame	ENST00000539066	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
In-frame	ENST00000539066	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
In-frame	ENST00000539066	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
5CDS-intron	ENST00000539066	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
intron-3CDS	ENST00000549195	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
intron-3CDS	ENST00000549195	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
intron-3CDS	ENST00000549195	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
intron-intron	ENST00000549195	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106799754	+	RBM19	chr12	114282593	-
Frame-shit	ENST00000261207	ENST00000409039		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
5CDS-intron	ENST00000261207	ENST00000538983		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
In-frame	ENST00000450142	ENST00000409039		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
5CDS-intron	ENST00000450142	ENST00000538983		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
Frame-shit	ENST00000437004	ENST00000409039		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
5CDS-intron	ENST00000437004	ENST00000538983		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
intron-3CDS	ENST00000546369	ENST00000409039		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
intron-intron	ENST00000546369	ENST00000538983		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
In-frame	ENST00000550107	ENST00000409039		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
5CDS-intron	ENST00000550107	ENST00000538983		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PPP1R12A	chr12	80328475	-	DNAH10	chr12	124303497	+
Frame-shit	ENST00000512215	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000512215	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000394854	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000394854	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000323055	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000323055	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000394853	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000394853	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
5UTR-3CDS	ENST00000507176	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
5UTR-3CDS	ENST00000507176	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000523694	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
Frame-shit	ENST00000523694	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
intron-3CDS	ENST00000510292	ENST00000503427		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
intron-3CDS	ENST00000510292	ENST00000502717		TCGA	RV	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149406269	+
In-frame	ENST00000329875	ENST00000341446		TCGA	RV	SARC	TCGA-DX-A6B9-01A	PYCR1	chr17	79894624	-	BRI3BP	chr12	125497080	+
In-frame	ENST00000337943	ENST00000341446		TCGA	RV	SARC	TCGA-DX-A6B9-01A	PYCR1	chr17	79894624	-	BRI3BP	chr12	125497080	+
In-frame	ENST00000403172	ENST00000341446		TCGA	RV	SARC	TCGA-DX-A6B9-01A	PYCR1	chr17	79894624	-	BRI3BP	chr12	125497080	+
In-frame	ENST00000577756	ENST00000341446		TCGA	RV	SARC	TCGA-DX-A6B9-01A	PYCR1	chr17	79894624	-	BRI3BP	chr12	125497080	+
Frame-shit	ENST00000402252	ENST00000341446		TCGA	RV	SARC	TCGA-DX-A6B9-01A	PYCR1	chr17	79894624	-	BRI3BP	chr12	125497080	+
In-frame	ENST00000247833	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000247833	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000247833	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
Frame-shit	ENST00000378815	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
Frame-shit	ENST00000378815	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000378815	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000325555	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000325555	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000325555	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000483530	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000483530	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000483530	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000550536	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000550536	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000550536	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000362025	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000362025	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000362025	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000551641	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000551641	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000551641	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000553099	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
In-frame	ENST00000553099	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000553099	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
intron-3CDS	ENST00000550847	ENST00000537081		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
intron-3CDS	ENST00000550847	ENST00000257861		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
intron-intron	ENST00000550847	ENST00000550083		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	RAB3IP	chr12	70189124	+	AVIL	chr12	58208009	-
5CDS-intron	ENST00000247833	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000247833	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000247833	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000247833	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000378815	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000378815	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000378815	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000378815	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5UTR-intron	ENST00000325555	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5UTR-intron	ENST00000325555	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5UTR-intron	ENST00000325555	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5UTR-intron	ENST00000325555	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000483530	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000483530	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000483530	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000483530	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000550536	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000550536	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000550536	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000550536	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000362025	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000362025	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000362025	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5CDS-intron	ENST00000362025	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000551641	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000551641	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000551641	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000551641	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000553099	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000553099	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000553099	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000553099	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000550847	ENST00000544798		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000550847	ENST00000238156		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000550847	ENST00000545135		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
intron-intron	ENST00000550847	ENST00000545891		TCGA	RV	SARC	TCGA-DX-A3LS-01A	RAB3IP	chr12	70150443	+	CCDC92	chr12	124440991	-
5UTR-3CDS	ENST00000537330	ENST00000370818		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
5UTR-3CDS	ENST00000537330	ENST00000394299		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
5UTR-intron	ENST00000537330	ENST00000543339		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000570891	ENST00000370818		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000570891	ENST00000394299		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
5CDS-intron	ENST00000570891	ENST00000543339		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000306801	ENST00000370818		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000306801	ENST00000394299		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
5CDS-intron	ENST00000306801	ENST00000543339		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000544334	ENST00000370818		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000544334	ENST00000394299		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
5CDS-intron	ENST00000544334	ENST00000543339		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
intron-3CDS	ENST00000575542	ENST00000370818		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
intron-3CDS	ENST00000575542	ENST00000394299		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
intron-intron	ENST00000575542	ENST00000543339		TCGA	RV	SARC	TCGA-FX-A48G-01A	RPTOR	chr17	78519591	+	GPC3	chrX	133087238	-
Frame-shit	ENST00000268099	ENST00000318445		TCGA	RV	SARC	TCGA-X6-A8C2-01A	SCAMP2	chr15	75165540	-	SLCO3A1	chr15	92638111	+
Frame-shit	ENST00000268099	ENST00000424469		TCGA	RV	SARC	TCGA-X6-A8C2-01A	SCAMP2	chr15	75165540	-	SLCO3A1	chr15	92638111	+
5CDS-intron	ENST00000268099	ENST00000555549		TCGA	RV	SARC	TCGA-X6-A8C2-01A	SCAMP2	chr15	75165540	-	SLCO3A1	chr15	92638111	+
5UTR-3CDS	ENST00000354234	ENST00000225402		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
5UTR-3UTR	ENST00000354234	ENST00000590321		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
5UTR-3CDS	ENST00000317257	ENST00000225402		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
5UTR-3UTR	ENST00000317257	ENST00000590321		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
3UTR-3CDS	ENST00000481439	ENST00000225402		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
3UTR-3UTR	ENST00000481439	ENST00000590321		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
5UTR-3CDS	ENST00000258672	ENST00000225402		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
5UTR-3UTR	ENST00000258672	ENST00000590321		TCGA	RV	SARC	TCGA-IE-A3OV-01A	SETDB2	chr13	50018993	+	AATF	chr17	35413901	+
3UTR-5UTR	ENST00000471981	ENST00000367838		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-5UTR	ENST00000471981	ENST00000271357		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-intron	ENST00000471981	ENST00000367836		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-intron	ENST00000471981	ENST00000539777		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-intron	ENST00000471981	ENST00000537209		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-5UTR	ENST00000471981	ENST00000361697		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-intron	ENST00000471981	ENST00000546300		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-5UTR	ENST00000471981	ENST00000367835		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
3UTR-intron	ENST00000471981	ENST00000485232		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367829	ENST00000367838		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367829	ENST00000271357		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367829	ENST00000367836		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367829	ENST00000539777		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367829	ENST00000537209		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367829	ENST00000361697		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367829	ENST00000546300		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367829	ENST00000367835		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367829	ENST00000485232		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000271375	ENST00000367838		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000271375	ENST00000271357		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000271375	ENST00000367836		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000271375	ENST00000539777		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000271375	ENST00000537209		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000271375	ENST00000361697		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000271375	ENST00000546300		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000271375	ENST00000367835		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000271375	ENST00000485232		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367825	ENST00000367838		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367825	ENST00000271357		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367825	ENST00000367836		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367825	ENST00000539777		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367825	ENST00000537209		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367825	ENST00000361697		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367825	ENST00000546300		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-5UTR	ENST00000367825	ENST00000367835		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000367825	ENST00000485232		TCGA	RV	SARC	TCGA-DX-A6BG-01A	SFT2D2	chr1	168195380	+	GPR161	chr1	168074132	-
5CDS-intron	ENST00000265631	ENST00000469675		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000265631	ENST00000257659		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000265631	ENST00000222511		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000416240	ENST00000469675		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000416240	ENST00000257659		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5CDS-intron	ENST00000416240	ENST00000222511		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5UTR-intron	ENST00000542654	ENST00000469675		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5UTR-intron	ENST00000542654	ENST00000257659		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
5UTR-intron	ENST00000542654	ENST00000222511		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
intron-intron	ENST00000494085	ENST00000469675		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
intron-intron	ENST00000494085	ENST00000257659		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
intron-intron	ENST00000494085	ENST00000222511		TCGA	RV	SARC	TCGA-HS-A5N9-01A	SLC25A13	chr7	95951254	-	GTPBP10	chr7	89982130	+
Frame-shit	ENST00000373068	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
Frame-shit	ENST00000373068	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
5CDS-intron	ENST00000373068	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
Frame-shit	ENST00000373069	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
Frame-shit	ENST00000373069	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
5CDS-intron	ENST00000373069	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000432073	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000432073	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-intron	ENST00000432073	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000373066	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000373066	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-intron	ENST00000373066	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000373064	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000373064	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-intron	ENST00000373064	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000433501	ENST00000286744		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-3CDS	ENST00000433501	ENST00000567476		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
intron-intron	ENST00000433501	ENST00000567716		TCGA	RV	SARC	TCGA-DX-A8BS-01A	SLC25A25	chr9	130830859	+	ADAMTSL3	chr15	84690162	+
Frame-shit	ENST00000318445	ENST00000315757		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
Frame-shit	ENST00000318445	ENST00000423218		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
5CDS-5UTR	ENST00000318445	ENST00000562826		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
Frame-shit	ENST00000424469	ENST00000315757		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
Frame-shit	ENST00000424469	ENST00000423218		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
5CDS-5UTR	ENST00000424469	ENST00000562826		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
intron-3CDS	ENST00000555549	ENST00000315757		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
intron-3CDS	ENST00000555549	ENST00000423218		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
intron-5UTR	ENST00000555549	ENST00000562826		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SLCO3A1	chr15	92459688	+	ITGA11	chr15	68643740	-
5CDS-5UTR	ENST00000272313	ENST00000264170		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000272313	ENST00000375773		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000272313	ENST00000409512		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000272313	ENST00000410015		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000407823	ENST00000264170		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000407823	ENST00000375773		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000407823	ENST00000409512		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000407823	ENST00000410015		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000345102	ENST00000264170		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000345102	ENST00000375773		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000345102	ENST00000409512		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000345102	ENST00000410015		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
intron-5UTR	ENST00000477749	ENST00000264170		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
intron-5UTR	ENST00000477749	ENST00000375773		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
intron-5UTR	ENST00000477749	ENST00000409512		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
intron-5UTR	ENST00000477749	ENST00000410015		TCGA	RV	SARC	TCGA-N1-A6IA-01A	SMEK2	chr2	55842587	-	KYNU	chr2	143642918	+
5CDS-5UTR	ENST00000338146	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56862460	+	MDM1	chr12	68717020	-
5CDS-5UTR	ENST00000338146	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56862460	+	MDM1	chr12	68717020	-
5CDS-5UTR	ENST00000338146	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56862460	+	MDM1	chr12	68717020	-
5CDS-intron	ENST00000338146	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56862460	+	MDM1	chr12	68717020	-
5CDS-intron	ENST00000338146	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56862460	+	MDM1	chr12	68717020	-
5CDS-intron	ENST00000338146	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56862460	+	MDM1	chr12	68717020	-
In-frame	ENST00000258301	ENST00000541742		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
In-frame	ENST00000258301	ENST00000490107		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
In-frame	ENST00000258301	ENST00000388985		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000258301	ENST00000366517		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000258301	ENST00000403792		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000469135	ENST00000541742		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000469135	ENST00000490107		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000469135	ENST00000388985		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000469135	ENST00000366517		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
intron-intron	ENST00000469135	ENST00000403792		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000542060	ENST00000541742		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000542060	ENST00000490107		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000542060	ENST00000388985		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5UTR-5UTR	ENST00000542060	ENST00000366517		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
5UTR-intron	ENST00000542060	ENST00000403792		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	STX6	chr1	180991775	-	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000375400	ENST00000377524		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000375400	ENST00000540523		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000375398	ENST00000377524		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000375398	ENST00000540523		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
5UTR-3CDS	ENST00000355867	ENST00000377524		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
5UTR-5UTR	ENST00000355867	ENST00000540523		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000535393	ENST00000377524		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000535393	ENST00000540523		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000460007	ENST00000377524		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000460007	ENST00000540523		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000538146	ENST00000377524		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000538146	ENST00000540523		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29923349	-	STAM	chr10	17702463	+
Frame-shit	ENST00000367821	ENST00000504449		TCGA	RV	SARC	TCGA-DX-A1L2-01A	TBX19	chr1	168278115	+	PCP4L1	chr1	161253458	+
3UTR-3CDS	ENST00000465440	ENST00000504449		TCGA	RV	SARC	TCGA-DX-A1L2-01A	TBX19	chr1	168278115	+	PCP4L1	chr1	161253458	+
5UTR-3CDS	ENST00000286827	ENST00000400546		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000286827	ENST00000284894		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000286827	ENST00000535285		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
5UTR-intron	ENST00000286827	ENST00000486367		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-3CDS	ENST00000541036	ENST00000400546		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-3CDS	ENST00000541036	ENST00000284894		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-3CDS	ENST00000541036	ENST00000535285		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-intron	ENST00000541036	ENST00000486367		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-3CDS	ENST00000469412	ENST00000400546		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-3CDS	ENST00000469412	ENST00000284894		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-3CDS	ENST00000469412	ENST00000535285		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
intron-intron	ENST00000469412	ENST00000486367		TCGA	RV	SARC	TCGA-QC-AA9N-01A	TIAM1	chr21	32931240	-	NCAM2	chr21	22696703	+
5UTR-3CDS	ENST00000261881	ENST00000284509		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
5UTR-3CDS	ENST00000261881	ENST00000559829		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
5UTR-intron	ENST00000261881	ENST00000558959		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
5UTR-3CDS	ENST00000367709	ENST00000284509		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
5UTR-3CDS	ENST00000367709	ENST00000559829		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
5UTR-intron	ENST00000367709	ENST00000558959		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
intron-3CDS	ENST00000561773	ENST00000284509		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
intron-3CDS	ENST00000561773	ENST00000559829		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
intron-intron	ENST00000561773	ENST00000558959		TCGA	RV	SARC	TCGA-LI-A9QH-01A	TIPIN	chr15	66648977	-	ATP8B4	chr15	50226379	-
In-frame	ENST00000372930	ENST00000217909		TCGA	RV	SARC	TCGA-3B-A9HV-01A	TMEM35	chrX	100334111	+	SLC25A43	chrX	118585972	+
Frame-shit	ENST00000372930	ENST00000336249		TCGA	RV	SARC	TCGA-3B-A9HV-01A	TMEM35	chrX	100334111	+	SLC25A43	chrX	118585972	+
5CDS-3UTR	ENST00000372930	ENST00000488158		TCGA	RV	SARC	TCGA-3B-A9HV-01A	TMEM35	chrX	100334111	+	SLC25A43	chrX	118585972	+
intron-3CDS	ENST00000478351	ENST00000217909		TCGA	RV	SARC	TCGA-3B-A9HV-01A	TMEM35	chrX	100334111	+	SLC25A43	chrX	118585972	+
intron-3CDS	ENST00000478351	ENST00000336249		TCGA	RV	SARC	TCGA-3B-A9HV-01A	TMEM35	chrX	100334111	+	SLC25A43	chrX	118585972	+
intron-3UTR	ENST00000478351	ENST00000488158		TCGA	RV	SARC	TCGA-3B-A9HV-01A	TMEM35	chrX	100334111	+	SLC25A43	chrX	118585972	+
In-frame	ENST00000261234	ENST00000517309		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5CDS-5UTR	ENST00000261234	ENST00000455950		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5CDS-intron	ENST00000261234	ENST00000518776		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5CDS-intron	ENST00000261234	ENST00000522072		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
3UTR-3CDS	ENST00000537982	ENST00000517309		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
3UTR-5UTR	ENST00000537982	ENST00000455950		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
3UTR-intron	ENST00000537982	ENST00000518776		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
3UTR-intron	ENST00000537982	ENST00000522072		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5UTR-3CDS	ENST00000537373	ENST00000517309		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5UTR-5UTR	ENST00000537373	ENST00000455950		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5UTR-intron	ENST00000537373	ENST00000518776		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5UTR-intron	ENST00000537373	ENST00000522072		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMEM5	chr12	64178852	+	PTDSS1	chr8	97285527	+
5UTR-3CDS	ENST00000266712	ENST00000398004		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC35E3	chr12	69152937	+
5UTR-intron	ENST00000266712	ENST00000538043		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TMTC3	chr12	88536264	+	SLC35E3	chr12	69152937	+
5CDS-5UTR	ENST00000520931	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000520931	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000520931	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000520931	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000389378	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000389378	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000389378	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000389378	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000523338	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000523338	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000523338	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000523338	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000315050	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000315050	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000315050	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000315050	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000522226	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000522226	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000522226	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000522226	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000518977	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000518977	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000518977	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000518977	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000521591	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000521591	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000521591	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000521591	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000524280	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000524280	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000524280	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000524280	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-5UTR	ENST00000523200	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000523200	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000523200	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
5CDS-intron	ENST00000523200	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
intron-5UTR	ENST00000521423	ENST00000517913		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
intron-intron	ENST00000521423	ENST00000435422		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
intron-intron	ENST00000521423	ENST00000447401		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
intron-intron	ENST00000521423	ENST00000337851		TCGA	RV	SARC	TCGA-X6-A7WC-01A	TNIP1	chr5	150418658	-	SGCD	chr5	155550866	+
In-frame	ENST00000261180	ENST00000324472		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	63976305	-
5CDS-5UTR	ENST00000261180	ENST00000413230		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	63976305	-
intron-3CDS	ENST00000549138	ENST00000324472		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	63976305	-
intron-5UTR	ENST00000549138	ENST00000413230		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	63976305	-
In-frame	ENST00000344204	ENST00000382275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000344204	ENST00000507958		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000344204	ENST00000502796		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000344204	ENST00000511273		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000344204	ENST00000274170		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000344204	ENST00000506372		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
5CDS-intron	ENST00000344204	ENST00000510297		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000537187	ENST00000382275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000537187	ENST00000507958		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000537187	ENST00000502796		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000537187	ENST00000511273		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000537187	ENST00000274170		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000537187	ENST00000506372		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
5CDS-intron	ENST00000537187	ENST00000510297		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000509967	ENST00000382275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000509967	ENST00000507958		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000509967	ENST00000502796		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000509967	ENST00000511273		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000509967	ENST00000274170		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000509967	ENST00000506372		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-intron	ENST00000509967	ENST00000510297		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000515710	ENST00000382275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000515710	ENST00000507958		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000515710	ENST00000502796		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000515710	ENST00000511273		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000515710	ENST00000274170		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000515710	ENST00000506372		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-intron	ENST00000515710	ENST00000510297		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000344135	ENST00000382275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000344135	ENST00000507958		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000344135	ENST00000502796		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000344135	ENST00000511273		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000344135	ENST00000274170		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-3CDS	ENST00000344135	ENST00000506372		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
intron-intron	ENST00000344135	ENST00000510297		TCGA	RV	SARC	TCGA-DX-AB2G-01A	TRIO	chr5	14420130	+	CDH18	chr5	19612710	-
In-frame	ENST00000357056	ENST00000556826		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000357056	ENST00000557430		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000357056	ENST00000339762		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000357056	ENST00000554729		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
In-frame	ENST00000328459	ENST00000556826		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000328459	ENST00000557430		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000328459	ENST00000339762		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000328459	ENST00000554729		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
intron-3CDS	ENST00000554654	ENST00000556826		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
intron-intron	ENST00000554654	ENST00000557430		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
intron-intron	ENST00000554654	ENST00000339762		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
intron-intron	ENST00000554654	ENST00000554729		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	TTC7B	chr14	91196419	-	SLC35F4	chr14	58048151	-
5CDS-intron	ENST00000557636	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000557636	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000557636	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000557636	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000286650	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000286650	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000286650	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000286650	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000298832	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000298832	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000298832	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000298832	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000556893	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000556893	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000556893	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000556893	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000554510	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000554510	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000554510	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
5CDS-intron	ENST00000554510	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000556977	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000556977	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000556977	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
intron-intron	ENST00000556977	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
3UTR-intron	ENST00000555422	ENST00000547153		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
3UTR-intron	ENST00000555422	ENST00000299045		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
3UTR-intron	ENST00000555422	ENST00000546625		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
3UTR-intron	ENST00000555422	ENST00000552690		TCGA	RV	SARC	TCGA-DX-A48N-01A	TTLL5	chr14	76219298	+	TCP11L2	chr12	106734604	+
Frame-shit	ENST00000448120	ENST00000374279		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	UGCG	chr9	114676885	+
5CDS-3UTR	ENST00000448120	ENST00000495085		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	UGCG	chr9	114676885	+
Frame-shit	ENST00000397132	ENST00000374279		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	UGCG	chr9	114676885	+
5CDS-3UTR	ENST00000397132	ENST00000495085		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	UGCG	chr9	114676885	+
In-frame	ENST00000279907	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	XRCC6BP1	chr12	58345541	+
5CDS-3UTR	ENST00000279907	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	XRCC6BP1	chr12	58345541	+
In-frame	ENST00000356828	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	XRCC6BP1	chr12	58345541	+
5CDS-3UTR	ENST00000356828	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	XRCC6BP1	chr12	58345541	+
intron-3CDS	ENST00000545232	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	XRCC6BP1	chr12	58345541	+
intron-3UTR	ENST00000545232	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	XRCC6BP1	chr12	58345541	+
5CDS-intron	ENST00000279907	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000279907	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000279907	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000279907	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000356828	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000356828	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000356828	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
5CDS-intron	ENST00000356828	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
intron-intron	ENST00000545232	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
intron-intron	ENST00000545232	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
intron-intron	ENST00000545232	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
intron-intron	ENST00000545232	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3U5-01A	UHRF1BP1L	chr12	100502164	-	ZDHHC17	chr12	77191214	+
Frame-shit	ENST00000261708	ENST00000433363		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
Frame-shit	ENST00000261708	ENST00000293800		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
5CDS-intron	ENST00000261708	ENST00000381074		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
5CDS-intron	ENST00000261708	ENST00000573648		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
5UTR-3CDS	ENST00000490218	ENST00000433363		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
5UTR-3CDS	ENST00000490218	ENST00000293800		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
5UTR-intron	ENST00000490218	ENST00000381074		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
5UTR-intron	ENST00000490218	ENST00000573648		TCGA	RV	SARC	TCGA-DX-A6YT-01A	UTP6	chr17	30219279	-	SLC13A5	chr17	6610475	-
In-frame	ENST00000356136	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000356136	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000356136	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000356136	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000356136	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000356136	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
In-frame	ENST00000528420	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000528420	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000528420	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000528420	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000528420	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000528420	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
In-frame	ENST00000533454	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000533454	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000533454	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000533454	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000533454	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000533454	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
In-frame	ENST00000531818	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000531818	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000531818	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000531818	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000531818	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000531818	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
In-frame	ENST00000532130	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000532130	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000532130	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000532130	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000532130	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000532130	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
In-frame	ENST00000539288	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000539288	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000539288	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000539288	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000539288	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-intron	ENST00000539288	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-3CDS	ENST00000525872	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000525872	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000525872	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000525872	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000525872	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000525872	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-3CDS	ENST00000538870	ENST00000532485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000538870	ENST00000530182		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000538870	ENST00000526597		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000538870	ENST00000533873		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000538870	ENST00000538157		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
intron-intron	ENST00000538870	ENST00000544113		TCGA	RV	SARC	TCGA-LI-A9QH-01A	UVRAG	chr11	75728024	+	ACER3	chr11	76726060	+
5CDS-5UTR	ENST00000335613	ENST00000409598		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000335613	ENST00000424281		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000335613	ENST00000304527		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000335613	ENST00000455740		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000335613	ENST00000409252		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000335613	ENST00000514152		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-intron	ENST00000335613	ENST00000427414		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000335613	ENST00000604030		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000409598		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000424281		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000304527		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000455740		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000409252		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000514152		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-intron	ENST00000535710	ENST00000427414		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
intron-5UTR	ENST00000535710	ENST00000604030		TCGA	RV	SARC	TCGA-X6-A7WC-01A	VWCE	chr11	61048096	-	SH3D19	chr4	152098107	-
5CDS-5UTR	ENST00000262577	ENST00000389327		TCGA	RV	SARC	TCGA-DX-A7EN-01A	ZC3H3	chr8	144618427	-	TRAPPC9	chr8	141461482	-
5CDS-5UTR	ENST00000262577	ENST00000389328		TCGA	RV	SARC	TCGA-DX-A7EN-01A	ZC3H3	chr8	144618427	-	TRAPPC9	chr8	141461482	-
5CDS-5UTR	ENST00000262577	ENST00000438773		TCGA	RV	SARC	TCGA-DX-A7EN-01A	ZC3H3	chr8	144618427	-	TRAPPC9	chr8	141461482	-
5CDS-intron	ENST00000262577	ENST00000522504		TCGA	RV	SARC	TCGA-DX-A7EN-01A	ZC3H3	chr8	144618427	-	TRAPPC9	chr8	141461482	-
5UTR-3CDS	ENST00000257177	ENST00000371191		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3CDS	ENST00000257177	ENST00000407417		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000257177	ENST00000479364		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000257177	ENST00000371189		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000257177	ENST00000403491		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000257177	ENST00000371187		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000257177	ENST00000485903		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000257177	ENST00000371185		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-intron	ENST00000257177	ENST00000371184		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-intron	ENST00000257177	ENST00000357977		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3CDS	ENST00000371544	ENST00000371191		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3CDS	ENST00000371544	ENST00000407417		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000371544	ENST00000479364		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000371544	ENST00000371189		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000371544	ENST00000403491		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000371544	ENST00000371187		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000371544	ENST00000485903		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000371544	ENST00000371185		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-intron	ENST00000371544	ENST00000371184		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-intron	ENST00000371544	ENST00000357977		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3CDS	ENST00000371541	ENST00000371191		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3CDS	ENST00000371541	ENST00000407417		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3UTR	ENST00000371541	ENST00000479364		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3UTR	ENST00000371541	ENST00000371189		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3UTR	ENST00000371541	ENST00000403491		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3UTR	ENST00000371541	ENST00000371187		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3UTR	ENST00000371541	ENST00000485903		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-3UTR	ENST00000371541	ENST00000371185		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-intron	ENST00000371541	ENST00000371184		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
intron-intron	ENST00000371541	ENST00000357977		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3CDS	ENST00000355809	ENST00000371191		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3CDS	ENST00000355809	ENST00000407417		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000355809	ENST00000479364		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000355809	ENST00000371189		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000355809	ENST00000403491		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000355809	ENST00000371187		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000355809	ENST00000485903		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-3UTR	ENST00000355809	ENST00000371185		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-intron	ENST00000355809	ENST00000371184		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
5UTR-intron	ENST00000355809	ENST00000357977		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ZCCHC11	chr1	53018603	-	NFIA	chr1	61824819	+
Frame-shit	ENST00000262096	ENST00000343958		TCGA	RV	SARC	TCGA-DX-AB36-01A	ZDHHC2	chr8	17014362	+	FGD6	chr12	95479684	-
Frame-shit	ENST00000262096	ENST00000546711		TCGA	RV	SARC	TCGA-DX-AB36-01A	ZDHHC2	chr8	17014362	+	FGD6	chr12	95479684	-
5CDS-intron	ENST00000262096	ENST00000549499		TCGA	RV	SARC	TCGA-DX-AB36-01A	ZDHHC2	chr8	17014362	+	FGD6	chr12	95479684	-
5CDS-intron	ENST00000262096	ENST00000550368		TCGA	RV	SARC	TCGA-DX-AB36-01A	ZDHHC2	chr8	17014362	+	FGD6	chr12	95479684	-
5UTR-3CDS	ENST00000318833	ENST00000537045		TCGA	RV	SARC	TCGA-X9-A971-01A	ZFP3	chr17	4981870	+	DGCR2	chr22	19055738	-
5UTR-3CDS	ENST00000318833	ENST00000263196		TCGA	RV	SARC	TCGA-X9-A971-01A	ZFP3	chr17	4981870	+	DGCR2	chr22	19055738	-
5UTR-3CDS	ENST00000318833	ENST00000545799		TCGA	RV	SARC	TCGA-X9-A971-01A	ZFP3	chr17	4981870	+	DGCR2	chr22	19055738	-
5UTR-intron	ENST00000318833	ENST00000473832		TCGA	RV	SARC	TCGA-X9-A971-01A	ZFP3	chr17	4981870	+	DGCR2	chr22	19055738	-
Frame-shit	ENST00000315475	ENST00000361005		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ZNF354C	chr5	178489096	+	PRSS3	chr9	33796641	+
Frame-shit	ENST00000315475	ENST00000342836		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ZNF354C	chr5	178489096	+	PRSS3	chr9	33796641	+
Frame-shit	ENST00000315475	ENST00000429677		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ZNF354C	chr5	178489096	+	PRSS3	chr9	33796641	+
Frame-shit	ENST00000315475	ENST00000379405		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ZNF354C	chr5	178489096	+	PRSS3	chr9	33796641	+
5CDS-intron	ENST00000315475	ENST00000495682		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ZNF354C	chr5	178489096	+	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000462139	ENST00000286574		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ZNF496	chr1	247491985	-	WIF1	chr12	65471634	-
Frame-shit	ENST00000294753	ENST00000286574		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ZNF496	chr1	247491985	-	WIF1	chr12	65471634	-
Frame-shit	ENST00000366498	ENST00000286574		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ZNF496	chr1	247491985	-	WIF1	chr12	65471634	-
5CDS-intron	ENST00000392149	ENST00000596924		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000392149	ENST00000263100		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000316950	ENST00000596924		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000316950	ENST00000263100		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5UTR-intron	ENST00000392150	ENST00000596924		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5UTR-intron	ENST00000392150	ENST00000263100		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000592490	ENST00000596924		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000592490	ENST00000263100		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000589833	ENST00000596924		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5CDS-intron	ENST00000589833	ENST00000263100		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5UTR-intron	ENST00000591073	ENST00000596924		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
5UTR-intron	ENST00000591073	ENST00000263100		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	A1BG	chr19	58869951	-
3UTR-5UTR	ENST00000537532	ENST00000392011		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
3UTR-5UTR	ENST00000537532	ENST00000409212		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
3UTR-5UTR	ENST00000537532	ENST00000344528		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
3UTR-intron	ENST00000537532	ENST00000489601		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000539644	ENST00000392011		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000539644	ENST00000409212		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000539644	ENST00000344528		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-intron	ENST00000539644	ENST00000489601		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000392404	ENST00000392011		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000392404	ENST00000409212		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000392404	ENST00000344528		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-intron	ENST00000392404	ENST00000489601		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000538932	ENST00000392011		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000538932	ENST00000409212		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000538932	ENST00000344528		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-intron	ENST00000538932	ENST00000489601		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000337815	ENST00000392011		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000337815	ENST00000409212		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-5UTR	ENST00000337815	ENST00000344528		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
5UTR-intron	ENST00000337815	ENST00000489601		TCGA	RV	SARC	TCGA-DX-AATS-01A	ZNF664	chr12	124458567	+	SH3BP4	chr2	235903947	+
In-frame	ENST00000268070	ENST00000380993		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
In-frame	ENST00000268070	ENST00000396577		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
5CDS-intron	ENST00000268070	ENST00000330289		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
5CDS-intron	ENST00000268070	ENST00000558405		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
5CDS-intron	ENST00000268070	ENST00000561031		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
5CDS-intron	ENST00000268070	ENST00000559723		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
intron-3CDS	ENST00000559976	ENST00000380993		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
intron-3CDS	ENST00000559976	ENST00000396577		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000559976	ENST00000330289		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000559976	ENST00000558405		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000559976	ENST00000561031		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
intron-intron	ENST00000559976	ENST00000559723		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ADAMTS17	chr15	100871094	-	SLC12A1	chr15	48548008	+
Frame-shit	ENST00000294016	ENST00000438666		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
Frame-shit	ENST00000294016	ENST00000451493		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
Frame-shit	ENST00000294016	ENST00000355182		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
Frame-shit	ENST00000294016	ENST00000494062		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
5CDS-5UTR	ENST00000294016	ENST00000495510		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
intron-3CDS	ENST00000571889	ENST00000438666		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
intron-3CDS	ENST00000571889	ENST00000451493		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
intron-3CDS	ENST00000571889	ENST00000355182		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
intron-3CDS	ENST00000571889	ENST00000494062		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
intron-5UTR	ENST00000571889	ENST00000495510		TCGA	RV	SARC	TCGA-HB-A3L4-01A	ADCY9	chr16	4033233	-	SPG20	chr13	36903654	-
5CDS-5UTR	ENST00000336665	ENST00000560829		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000336665	ENST00000353874		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000336665	ENST00000261889		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000336665	ENST00000559844		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000336665	ENST00000561026		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-intron	ENST00000336665	ENST00000559339		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000304032	ENST00000560829		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000304032	ENST00000353874		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000304032	ENST00000261889		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000304032	ENST00000559844		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000304032	ENST00000561026		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-intron	ENST00000304032	ENST00000559339		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000409538	ENST00000560829		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000409538	ENST00000353874		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000409538	ENST00000261889		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000409538	ENST00000559844		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000409538	ENST00000561026		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-intron	ENST00000409538	ENST00000559339		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000428334	ENST00000560829		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000428334	ENST00000353874		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000428334	ENST00000261889		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000428334	ENST00000559844		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-5UTR	ENST00000428334	ENST00000561026		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
5CDS-intron	ENST00000428334	ENST00000559339		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
intron-5UTR	ENST00000409457	ENST00000560829		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
intron-5UTR	ENST00000409457	ENST00000353874		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
intron-5UTR	ENST00000409457	ENST00000261889		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
intron-5UTR	ENST00000409457	ENST00000559844		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
intron-5UTR	ENST00000409457	ENST00000561026		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
intron-intron	ENST00000409457	ENST00000559339		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AGAP1	chr2	236957925	+	SNX1	chr15	64404772	+
Frame-shit	ENST00000257897	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
Frame-shit	ENST00000257897	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
5CDS-3UTR	ENST00000257897	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
5CDS-5UTR	ENST00000257897	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
Frame-shit	ENST00000547588	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
Frame-shit	ENST00000547588	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
5CDS-3UTR	ENST00000547588	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
5CDS-5UTR	ENST00000547588	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	AGAP2	chr12	58125149	-	CNOT2	chr12	70729218	+
In-frame	ENST00000461153	ENST00000375990		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
In-frame	ENST00000461153	ENST00000259253		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
5CDS-intron	ENST00000461153	ENST00000465836		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
In-frame	ENST00000420699	ENST00000375990		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
In-frame	ENST00000420699	ENST00000259253		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
5CDS-intron	ENST00000420699	ENST00000465836		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
intron-3CDS	ENST00000357042	ENST00000375990		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
intron-3CDS	ENST00000357042	ENST00000259253		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
intron-intron	ENST00000357042	ENST00000465836		TCGA	RV	SARC	TCGA-DX-A6YV-01A	ANKRD36	chr2	97812253	+	UGGT1	chr2	128880760	+
5CDS-intron	ENST00000336498	ENST00000339690		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000336498	ENST00000358556		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-5UTR	ENST00000336498	ENST00000511804		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-5UTR	ENST00000336498	ENST00000324300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000336498	ENST00000506066		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000336498	ENST00000503721		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000414545	ENST00000339690		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000414545	ENST00000358556		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-5UTR	ENST00000414545	ENST00000511804		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-5UTR	ENST00000414545	ENST00000324300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000414545	ENST00000506066		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
5CDS-intron	ENST00000414545	ENST00000503721		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
intron-intron	ENST00000510076	ENST00000339690		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
intron-intron	ENST00000510076	ENST00000358556		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
intron-5UTR	ENST00000510076	ENST00000511804		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
intron-5UTR	ENST00000510076	ENST00000324300		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
intron-intron	ENST00000510076	ENST00000506066		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
intron-intron	ENST00000510076	ENST00000503721		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ARHGAP10	chr4	148887990	+	EDNRA	chr4	148441003	+
In-frame	ENST00000250111	ENST00000340308		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ATP1B2	chr17	7554948	+	SLC37A3	chr7	140037149	-
Frame-shit	ENST00000250111	ENST00000447932		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ATP1B2	chr17	7554948	+	SLC37A3	chr7	140037149	-
Frame-shit	ENST00000250111	ENST00000326232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ATP1B2	chr17	7554948	+	SLC37A3	chr7	140037149	-
5CDS-intron	ENST00000250111	ENST00000429996		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ATP1B2	chr17	7554948	+	SLC37A3	chr7	140037149	-
5CDS-intron	ENST00000250111	ENST00000461089		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ATP1B2	chr17	7554948	+	SLC37A3	chr7	140037149	-
In-frame	ENST00000348959	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90003714	-	LIN7A	chr12	81283148	-
In-frame	ENST00000261173	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90003714	-	LIN7A	chr12	81283148	-
In-frame	ENST00000359142	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90003714	-	LIN7A	chr12	81283148	-
In-frame	ENST00000428670	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90003714	-	LIN7A	chr12	81283148	-
In-frame	ENST00000393164	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90003714	-	LIN7A	chr12	81283148	-
In-frame	ENST00000357681	ENST00000367222		TCGA	RV	SARC	TCGA-DX-AB32-01A	ATP2B4	chr1	203683405	+	OPTC	chr1	203472042	+
In-frame	ENST00000391954	ENST00000367222		TCGA	RV	SARC	TCGA-DX-AB32-01A	ATP2B4	chr1	203683405	+	OPTC	chr1	203472042	+
In-frame	ENST00000367218	ENST00000367222		TCGA	RV	SARC	TCGA-DX-AB32-01A	ATP2B4	chr1	203683405	+	OPTC	chr1	203472042	+
In-frame	ENST00000367219	ENST00000367222		TCGA	RV	SARC	TCGA-DX-AB32-01A	ATP2B4	chr1	203683405	+	OPTC	chr1	203472042	+
In-frame	ENST00000341360	ENST00000367222		TCGA	RV	SARC	TCGA-DX-AB32-01A	ATP2B4	chr1	203683405	+	OPTC	chr1	203472042	+
intron-3CDS	ENST00000466407	ENST00000367222		TCGA	RV	SARC	TCGA-DX-AB32-01A	ATP2B4	chr1	203683405	+	OPTC	chr1	203472042	+
In-frame	ENST00000262919	ENST00000252032		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATRN	chr20	3452164	+	C20orf194	chr20	3363153	-
5CDS-intron	ENST00000262919	ENST00000453730		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATRN	chr20	3452164	+	C20orf194	chr20	3363153	-
5CDS-intron	ENST00000262919	ENST00000498079		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATRN	chr20	3452164	+	C20orf194	chr20	3363153	-
In-frame	ENST00000446916	ENST00000252032		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATRN	chr20	3452164	+	C20orf194	chr20	3363153	-
5CDS-intron	ENST00000446916	ENST00000453730		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATRN	chr20	3452164	+	C20orf194	chr20	3363153	-
5CDS-intron	ENST00000446916	ENST00000498079		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATRN	chr20	3452164	+	C20orf194	chr20	3363153	-
Frame-shit	ENST00000303617	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000303617	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000303617	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000303617	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000375731	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000375731	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000375731	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000375731	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000422391	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000422391	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
Frame-shit	ENST00000422391	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000422391	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000478465	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000478465	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000478465	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
intron-intron	ENST00000478465	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A3M1-01A	AUH	chr9	94058303	-	CPM	chr12	69265736	-
In-frame	ENST00000539107	ENST00000522684		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000535192		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000519465		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000517887		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000521059		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000395218		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000538769		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000340930		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000519419		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000539107	ENST00000430260		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000539107	ENST00000519881		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000539107	ENST00000520892		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000539107	ENST00000519635		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000539107	ENST00000517712		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000539107	ENST00000522950		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000539107	ENST00000520151		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000522684		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000535192		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000519465		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000517887		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000521059		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000395218		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000538769		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000340930		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000519419		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000545336	ENST00000430260		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000545336	ENST00000519881		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000545336	ENST00000520892		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000545336	ENST00000519635		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000545336	ENST00000517712		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000545336	ENST00000522950		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000545336	ENST00000520151		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000522684		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000535192		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000519465		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000517887		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000521059		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000395218		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000538769		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000340930		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000519419		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381256	ENST00000430260		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381256	ENST00000519881		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381256	ENST00000520892		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381256	ENST00000519635		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381256	ENST00000517712		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381256	ENST00000522950		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381256	ENST00000520151		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000522684		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000535192		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000519465		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000517887		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000521059		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000395218		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000538769		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000340930		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000519419		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000381259	ENST00000430260		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381259	ENST00000519881		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381259	ENST00000520892		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381259	ENST00000519635		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381259	ENST00000517712		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381259	ENST00000522950		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000381259	ENST00000520151		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000522684		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000535192		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000519465		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000517887		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000521059		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000395218		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000538769		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000340930		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000519419		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-3CDS	ENST00000540401	ENST00000430260		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-intron	ENST00000540401	ENST00000519881		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-intron	ENST00000540401	ENST00000520892		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-intron	ENST00000540401	ENST00000519635		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-intron	ENST00000540401	ENST00000517712		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-intron	ENST00000540401	ENST00000522950		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
3UTR-intron	ENST00000540401	ENST00000520151		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000522684		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000535192		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000519465		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000517887		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000521059		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000395218		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000538769		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000340930		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000519419		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
In-frame	ENST00000306172	ENST00000430260		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000306172	ENST00000519881		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000306172	ENST00000520892		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000306172	ENST00000519635		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000306172	ENST00000517712		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000306172	ENST00000522950		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5CDS-intron	ENST00000306172	ENST00000520151		TCGA	RV	SARC	TCGA-DX-A48N-01A	CCDC91	chr12	28605587	+	PTK2	chr8	141696793	-
5UTR-3CDS	ENST00000544798	ENST00000368468		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
5UTR-3CDS	ENST00000544798	ENST00000368466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
In-frame	ENST00000238156	ENST00000368468		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
In-frame	ENST00000238156	ENST00000368466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
In-frame	ENST00000545135	ENST00000368468		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
In-frame	ENST00000545135	ENST00000368466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
Frame-shit	ENST00000545891	ENST00000368468		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
Frame-shit	ENST00000545891	ENST00000368466		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCDC92	chr12	124427291	-	MAN1A1	chr6	119623268	-
intron-5UTR	ENST00000380050	ENST00000518836		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000380050	ENST00000313708		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000380050	ENST00000380654		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000380050	ENST00000517373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000265741	ENST00000518836		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000265741	ENST00000313708		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000265741	ENST00000380654		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000265741	ENST00000517373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000406263	ENST00000518836		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000406263	ENST00000313708		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000406263	ENST00000380654		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000406263	ENST00000517373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000436577	ENST00000518836		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000436577	ENST00000313708		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000436577	ENST00000380654		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000436577	ENST00000517373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000496279	ENST00000518836		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000496279	ENST00000313708		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000496279	ENST00000380654		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000496279	ENST00000517373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CDK14	chr7	90123744	+	EBF1	chr5	158126150	-
Frame-shit	ENST00000262570	ENST00000602723		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000262570	ENST00000400186		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000262570	ENST00000520002		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000262570	ENST00000602557		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000262570	ENST00000537824		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000262570	ENST00000542608		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000262570	ENST00000539096		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5CDS-intron	ENST00000262570	ENST00000523387		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000602723		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000400186		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000520002		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000602557		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000537824		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000542608		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
Frame-shit	ENST00000448878	ENST00000539096		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5CDS-intron	ENST00000448878	ENST00000523387		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000602723		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000400186		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000520002		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000602557		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000537824		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000542608		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-3CDS	ENST00000476546	ENST00000539096		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
5UTR-intron	ENST00000476546	ENST00000523387		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000602723		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000400186		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000520002		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000602557		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000537824		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000542608		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-3CDS	ENST00000542753	ENST00000539096		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
intron-intron	ENST00000542753	ENST00000523387		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CHCHD3	chr7	132570422	-	CSMD1	chr8	3205683	-
In-frame	ENST00000375458	ENST00000288670		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000375458	ENST00000475377		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000375458	ENST00000497192		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
In-frame	ENST00000342193	ENST00000288670		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000342193	ENST00000475377		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000342193	ENST00000497192		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
Frame-shit	ENST00000409184	ENST00000288670		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000409184	ENST00000475377		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000409184	ENST00000497192		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
Frame-shit	ENST00000392717	ENST00000288670		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000392717	ENST00000475377		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000392717	ENST00000497192		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
Frame-shit	ENST00000194871	ENST00000288670		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000194871	ENST00000475377		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5CDS-intron	ENST00000194871	ENST00000497192		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5UTR-3CDS	ENST00000491126	ENST00000288670		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000491126	ENST00000475377		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000491126	ENST00000497192		TCGA	RV	SARC	TCGA-DX-A6B8-01A	COBLL1	chr2	165697666	-	FMNL2	chr2	153378457	+
In-frame	ENST00000331366	ENST00000452611		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
In-frame	ENST00000331366	ENST00000382622		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000331366	ENST00000261252		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000538596	ENST00000452611		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000538596	ENST00000382622		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
intron-3UTR	ENST00000538596	ENST00000261252		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000546603	ENST00000452611		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
intron-3CDS	ENST00000546603	ENST00000382622		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
intron-3UTR	ENST00000546603	ENST00000261252		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
In-frame	ENST00000360449	ENST00000452611		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
In-frame	ENST00000360449	ENST00000382622		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
5CDS-3UTR	ENST00000360449	ENST00000261252		TCGA	RV	SARC	TCGA-DX-A240-01A	CPNE8	chr12	39266806	-	PRMT8	chr12	3649772	+
Frame-shit	ENST00000275016	ENST00000267199		TCGA	RV	SARC	TCGA-DX-A7EI-01A	CYP39A1	chr6	46598700	-	VPS33A	chr12	122745994	-
5CDS-5UTR	ENST00000275016	ENST00000542310		TCGA	RV	SARC	TCGA-DX-A7EI-01A	CYP39A1	chr6	46598700	-	VPS33A	chr12	122745994	-
5CDS-5UTR	ENST00000275016	ENST00000451053		TCGA	RV	SARC	TCGA-DX-A7EI-01A	CYP39A1	chr6	46598700	-	VPS33A	chr12	122745994	-
intron-3CDS	ENST00000489657	ENST00000267199		TCGA	RV	SARC	TCGA-DX-A7EI-01A	CYP39A1	chr6	46598700	-	VPS33A	chr12	122745994	-
intron-5UTR	ENST00000489657	ENST00000542310		TCGA	RV	SARC	TCGA-DX-A7EI-01A	CYP39A1	chr6	46598700	-	VPS33A	chr12	122745994	-
intron-5UTR	ENST00000489657	ENST00000451053		TCGA	RV	SARC	TCGA-DX-A7EI-01A	CYP39A1	chr6	46598700	-	VPS33A	chr12	122745994	-
5UTR-3CDS	ENST00000367922	ENST00000431239		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-intron	ENST00000367922	ENST00000369259		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-intron	ENST00000367922	ENST00000369258		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-3UTR	ENST00000367922	ENST00000467213		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-intron	ENST00000367922	ENST00000361293		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-3CDS	ENST00000367921	ENST00000431239		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-intron	ENST00000367921	ENST00000369259		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-intron	ENST00000367921	ENST00000369258		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-3UTR	ENST00000367921	ENST00000467213		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-intron	ENST00000367921	ENST00000361293		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DDR2	chr1	162625164	+	CHD1L	chr1	146724278	+
5UTR-3CDS	ENST00000473039	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5UTR-3CDS	ENST00000473039	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5UTR-3CDS	ENST00000473039	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5UTR-3CDS	ENST00000473039	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5UTR-intron	ENST00000473039	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373624	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373624	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373624	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373624	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5CDS-intron	ENST00000373624	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
intron-3CDS	ENST00000542603	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
intron-3CDS	ENST00000542603	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
intron-3CDS	ENST00000542603	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
intron-3CDS	ENST00000542603	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
intron-intron	ENST00000542603	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000394219	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000394219	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000394219	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000394219	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5CDS-intron	ENST00000394219	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373620	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373620	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373620	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000373620	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5CDS-intron	ENST00000373620	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000394215	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000394215	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000394215	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000394215	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5CDS-intron	ENST00000394215	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000373618	ENST00000360822		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000373618	ENST00000359309		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000373618	ENST00000349780		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
Frame-shit	ENST00000373618	ENST00000360190		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
5CDS-intron	ENST00000373618	ENST00000480467		TCGA	RV	SARC	TCGA-HB-A3L4-01A	DENND1A	chr9	126519982	-	CDK5RAP2	chr9	123334319	-
In-frame	ENST00000264057	ENST00000252711		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000264057	ENST00000471378		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000264057	ENST00000404554		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000264057	ENST00000307300		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000264057	ENST00000407129		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
In-frame	ENST00000409813	ENST00000252711		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000409813	ENST00000471378		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000409813	ENST00000404554		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000409813	ENST00000307300		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
5CDS-intron	ENST00000409813	ENST00000407129		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
intron-3CDS	ENST00000489613	ENST00000252711		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
intron-intron	ENST00000489613	ENST00000471378		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
intron-intron	ENST00000489613	ENST00000404554		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
intron-intron	ENST00000489613	ENST00000307300		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
intron-intron	ENST00000489613	ENST00000407129		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DGKD	chr2	234299129	+	NDUFA10	chr2	240961757	-
In-frame	ENST00000357674	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000314062	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000346964	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000419354	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000452595	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000422288	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000448528	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000443183	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000450955	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
In-frame	ENST00000392382	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
intron-3CDS	ENST00000485409	ENST00000407559		TCGA	RV	SARC	TCGA-DX-AATS-01A	DLG1	chr3	196807922	-	WDR60	chr7	158711431	+
Frame-shit	ENST00000266037	ENST00000261798		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
Frame-shit	ENST00000266037	ENST00000377843		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-5UTR	ENST00000266037	ENST00000515435		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-5UTR	ENST00000266037	ENST00000504676		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-5UTR	ENST00000266037	ENST00000515768		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-intron	ENST00000266037	ENST00000606719		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-intron	ENST00000266037	ENST00000606299		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-intron	ENST00000266037	ENST00000515748		TCGA	RV	SARC	TCGA-3B-A9HV-01A	DOCK3	chr3	50816189	+	CSNK1A1	chr5	148904734	-
5CDS-5UTR	ENST00000398665	ENST00000326956		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
5CDS-5UTR	ENST00000398665	ENST00000417664		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
5CDS-5UTR	ENST00000398665	ENST00000371320		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
5CDS-5UTR	ENST00000398665	ENST00000371319		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
5CDS-5UTR	ENST00000398665	ENST00000357475		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
intron-5UTR	ENST00000608122	ENST00000326956		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
intron-5UTR	ENST00000608122	ENST00000417664		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
intron-5UTR	ENST00000608122	ENST00000371320		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
intron-5UTR	ENST00000608122	ENST00000371319		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
intron-5UTR	ENST00000608122	ENST00000357475		TCGA	RV	SARC	TCGA-K1-A3PO-01A	DOT1L	chr19	2164264	+	SSBP3	chr1	54694499	-
5CDS-intron	ENST00000309311	ENST00000230538		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000522006		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000389463		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000424408		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000524032		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000431543		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000368638		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000309311	ENST00000453937		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000230538		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000522006		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000389463		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000424408		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000524032		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000431543		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000368638		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
intron-intron	ENST00000600720	ENST00000453937		TCGA	RV	SARC	TCGA-KD-A5QU-01A	EEF2	chr19	3976055	-	LAMA4	chr6	112507969	-
Frame-shit	ENST00000557325	ENST00000541158		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
Frame-shit	ENST00000557325	ENST00000342443		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
Frame-shit	ENST00000557325	ENST00000298171		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
Frame-shit	ENST00000557325	ENST00000554263		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
Frame-shit	ENST00000557325	ENST00000554435		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
5CDS-intron	ENST00000557325	ENST00000557096		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
In-frame	ENST00000334696	ENST00000541158		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
In-frame	ENST00000334696	ENST00000342443		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
In-frame	ENST00000334696	ENST00000298171		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
In-frame	ENST00000334696	ENST00000554263		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
In-frame	ENST00000334696	ENST00000554435		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
5CDS-intron	ENST00000334696	ENST00000557096		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000556242	ENST00000541158		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000556242	ENST00000342443		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000556242	ENST00000298171		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000556242	ENST00000554263		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000556242	ENST00000554435		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-intron	ENST00000556242	ENST00000557096		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000554664	ENST00000541158		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000554664	ENST00000342443		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000554664	ENST00000298171		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000554664	ENST00000554263		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-3CDS	ENST00000554664	ENST00000554435		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
intron-intron	ENST00000554664	ENST00000557096		TCGA	RV	SARC	TCGA-DX-A48N-01A	ENTPD5	chr14	74453517	-	TSHR	chr14	81558875	+
5CDS-3UTR	ENST00000330394	ENST00000553492		TCGA	RV	SARC	TCGA-DX-A23R-01A	EPHB3	chr3	184290964	+	PAX2	chr10	102566187	+
5CDS-3UTR	ENST00000330394	ENST00000361791		TCGA	RV	SARC	TCGA-DX-A23R-01A	EPHB3	chr3	184290964	+	PAX2	chr10	102566187	+
5CDS-3UTR	ENST00000330394	ENST00000355243		TCGA	RV	SARC	TCGA-DX-A23R-01A	EPHB3	chr3	184290964	+	PAX2	chr10	102566187	+
5CDS-3UTR	ENST00000330394	ENST00000428433		TCGA	RV	SARC	TCGA-DX-A23R-01A	EPHB3	chr3	184290964	+	PAX2	chr10	102566187	+
5CDS-3UTR	ENST00000330394	ENST00000370296		TCGA	RV	SARC	TCGA-DX-A23R-01A	EPHB3	chr3	184290964	+	PAX2	chr10	102566187	+
5CDS-3UTR	ENST00000330394	ENST00000556085		TCGA	RV	SARC	TCGA-DX-A23R-01A	EPHB3	chr3	184290964	+	PAX2	chr10	102566187	+
In-frame	ENST00000264433	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
In-frame	ENST00000264433	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
5CDS-intron	ENST00000264433	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
5CDS-intron	ENST00000264433	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
5CDS-intron	ENST00000264433	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
5CDS-5UTR	ENST00000264433	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-3CDS	ENST00000379346	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-3CDS	ENST00000379346	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-intron	ENST00000379346	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-intron	ENST00000379346	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-intron	ENST00000379346	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-5UTR	ENST00000379346	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-3CDS	ENST00000505445	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-3CDS	ENST00000505445	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-intron	ENST00000505445	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-intron	ENST00000505445	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-intron	ENST00000505445	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
intron-5UTR	ENST00000505445	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A8BR-01A	FNIP2	chr4	159690471	+	EXOC4	chr7	133622644	+
5UTR-3CDS	ENST00000299293	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000299293	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000299293	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-intron	ENST00000299293	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000549921	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000549921	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000549921	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-intron	ENST00000549921	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000550389	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000550389	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000550389	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
5UTR-intron	ENST00000550389	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000397997	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000397997	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000397997	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
intron-intron	ENST00000397997	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	FRS2	chr12	69864310	+	NUP107	chr12	69135593	+
3UTR-3CDS	ENST00000482812	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
3UTR-3CDS	ENST00000482812	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
3UTR-intron	ENST00000482812	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
3UTR-intron	ENST00000482812	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
3UTR-intron	ENST00000482812	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5UTR-3CDS	ENST00000430044	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5UTR-3CDS	ENST00000430044	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5UTR-intron	ENST00000430044	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5UTR-intron	ENST00000430044	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5UTR-intron	ENST00000430044	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
In-frame	ENST00000452146	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
In-frame	ENST00000452146	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000452146	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000452146	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000452146	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000434507	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000434507	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000434507	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000434507	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000434507	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000415421	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000415421	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000415421	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000415421	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000415421	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000320311	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000320311	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000320311	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000320311	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000320311	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000422997	ENST00000389413		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000422997	ENST00000409483		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000422997	ENST00000389416		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000422997	ENST00000389418		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000422997	ENST00000404321		TCGA	RV	SARC	TCGA-X6-A8C4-01A	GALNT11	chr7	151722969	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000437099	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000437099	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000437099	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000323816	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000323816	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000323816	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
Frame-shit	ENST00000432992	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
Frame-shit	ENST00000432992	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
5CDS-5UTR	ENST00000432992	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
5UTR-3CDS	ENST00000540214	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
5UTR-3CDS	ENST00000540214	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
5UTR-5UTR	ENST00000540214	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000585266	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000585266	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000585266	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000580865	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000580865	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000580865	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000583882	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000583882	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000583882	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000542249	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000542249	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000542249	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000396115	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000396115	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000396115	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000579158	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000579158	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000579158	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000578655	ENST00000284509		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-3CDS	ENST00000578655	ENST00000559829		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
intron-5UTR	ENST00000578655	ENST00000558959		TCGA	RV	SARC	TCGA-SG-A849-01A	GAS7	chr17	10101525	-	ATP8B4	chr15	50273491	-
In-frame	ENST00000530927	ENST00000230449		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
In-frame	ENST00000530927	ENST00000448181		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
5CDS-intron	ENST00000530927	ENST00000475028		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
In-frame	ENST00000380815	ENST00000230449		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
In-frame	ENST00000380815	ENST00000448181		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
5CDS-intron	ENST00000380815	ENST00000475028		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
intron-3CDS	ENST00000467288	ENST00000230449		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
intron-3CDS	ENST00000467288	ENST00000448181		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
intron-intron	ENST00000467288	ENST00000475028		TCGA	RV	SARC	TCGA-DX-A8BU-01A	GMDS	chr6	1726650	-	EXOC2	chr6	556564	-
5CDS-5UTR	ENST00000394997	ENST00000267485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
5CDS-5UTR	ENST00000394997	ENST00000334342		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
5CDS-5UTR	ENST00000337138	ENST00000267485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
5CDS-5UTR	ENST00000337138	ENST00000334342		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
5CDS-5UTR	ENST00000323441	ENST00000267485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
5CDS-5UTR	ENST00000323441	ENST00000334342		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000557538	ENST00000267485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000557538	ENST00000334342		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000539097	ENST00000267485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000539097	ENST00000334342		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000557206	ENST00000267485		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
intron-5UTR	ENST00000557206	ENST00000334342		TCGA	RV	SARC	TCGA-LI-A9QH-01A	HIF1A	chr14	62162557	+	C14orf37	chr14	58606132	-
Frame-shit	ENST00000299518	ENST00000368721		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
Frame-shit	ENST00000299518	ENST00000284690		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
Frame-shit	ENST00000299518	ENST00000284688		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
Frame-shit	ENST00000558554	ENST00000368721		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
Frame-shit	ENST00000558554	ENST00000284690		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
Frame-shit	ENST00000558554	ENST00000284688		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000559205	ENST00000368721		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000559205	ENST00000284690		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000559205	ENST00000284688		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000441490	ENST00000368721		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000441490	ENST00000284690		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000441490	ENST00000284688		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
3UTR-3CDS	ENST00000558535	ENST00000368721		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
3UTR-3CDS	ENST00000558535	ENST00000284690		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
3UTR-3CDS	ENST00000558535	ENST00000284688		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000561366	ENST00000368721		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000561366	ENST00000284690		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
intron-3CDS	ENST00000561366	ENST00000284688		TCGA	RV	SARC	TCGA-DX-A8BT-01A	IDH3A	chr15	78452548	+	DHX32	chr10	127526956	-
In-frame	ENST00000268035	ENST00000354570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000268035	ENST00000454590		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000268035	ENST00000544465		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000268035	ENST00000438100		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
5CDS-5UTR	ENST00000268035	ENST00000432797		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000558762	ENST00000354570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000558762	ENST00000454590		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000558762	ENST00000544465		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
In-frame	ENST00000558762	ENST00000438100		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
5CDS-5UTR	ENST00000558762	ENST00000432797		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
intron-3CDS	ENST00000560432	ENST00000354570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
intron-3CDS	ENST00000560432	ENST00000454590		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
intron-3CDS	ENST00000560432	ENST00000544465		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
intron-3CDS	ENST00000560432	ENST00000438100		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
intron-5UTR	ENST00000560432	ENST00000432797		TCGA	RV	SARC	TCGA-3B-A9HL-01A	IGF1R	chr15	99251336	+	MAP7	chr6	136742937	-
Frame-shit	ENST00000261023	ENST00000409869		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
Frame-shit	ENST00000261023	ENST00000295095		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
5CDS-intron	ENST00000261023	ENST00000473426		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
Frame-shit	ENST00000374907	ENST00000409869		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
Frame-shit	ENST00000374907	ENST00000295095		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
5CDS-intron	ENST00000374907	ENST00000473426		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
Frame-shit	ENST00000433736	ENST00000409869		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
Frame-shit	ENST00000433736	ENST00000295095		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
5CDS-intron	ENST00000433736	ENST00000473426		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
3UTR-3CDS	ENST00000474571	ENST00000409869		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
3UTR-3CDS	ENST00000474571	ENST00000295095		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
3UTR-intron	ENST00000474571	ENST00000473426		TCGA	RV	SARC	TCGA-VT-A80G-01A	ITGAV	chr2	187534541	+	ARHGAP15	chr2	143986150	+
Frame-shit	ENST00000398645	ENST00000266086		TCGA	RV	SARC	TCGA-SI-A71O-01A	KDM2A	chr11	66947688	+	SLC5A4	chr22	32650200	-
Frame-shit	ENST00000529006	ENST00000266086		TCGA	RV	SARC	TCGA-SI-A71O-01A	KDM2A	chr11	66947688	+	SLC5A4	chr22	32650200	-
intron-3CDS	ENST00000526258	ENST00000266086		TCGA	RV	SARC	TCGA-SI-A71O-01A	KDM2A	chr11	66947688	+	SLC5A4	chr22	32650200	-
intron-3CDS	ENST00000308783	ENST00000266086		TCGA	RV	SARC	TCGA-SI-A71O-01A	KDM2A	chr11	66947688	+	SLC5A4	chr22	32650200	-
intron-3CDS	ENST00000530342	ENST00000266086		TCGA	RV	SARC	TCGA-SI-A71O-01A	KDM2A	chr11	66947688	+	SLC5A4	chr22	32650200	-
In-frame	ENST00000372396	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
In-frame	ENST00000372396	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
In-frame	ENST00000372396	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
5CDS-intron	ENST00000372396	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000463151	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000463151	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000463151	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
intron-intron	ENST00000463151	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	KDM4A	chr1	44163684	+	FAF1	chr1	50957473	-
Frame-shit	ENST00000251691	ENST00000413795		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
Frame-shit	ENST00000251691	ENST00000369138		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
Frame-shit	ENST00000251691	ENST00000421544		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
5CDS-intron	ENST00000251691	ENST00000358361		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
5CDS-intron	ENST00000251691	ENST00000318991		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
5CDS-intron	ENST00000251691	ENST00000369137		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
5CDS-intron	ENST00000251691	ENST00000369134		TCGA	RV	SARC	TCGA-HB-A3YV-01A	KIAA1244	chr6	138601301	+	GRIK2	chr6	102483216	+
Frame-shit	ENST00000251691	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6BH-01A	KIAA1244	chr6	138564131	+	RFWD2	chr1	176145143	-
Frame-shit	ENST00000251691	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6BH-01A	KIAA1244	chr6	138564131	+	RFWD2	chr1	176145143	-
Frame-shit	ENST00000297814	ENST00000361255		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000297814	ENST00000449912		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000297814	ENST00000451710		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000297814	ENST00000376872		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000297814	ENST00000360774		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000297814	ENST00000376871		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-intron	ENST00000297814	ENST00000376864		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-intron	ENST00000297814	ENST00000359047		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-intron	ENST00000297814	ENST00000483186		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000413982	ENST00000361255		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000413982	ENST00000449912		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000413982	ENST00000451710		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000413982	ENST00000376872		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000413982	ENST00000360774		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000413982	ENST00000376871		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-intron	ENST00000413982	ENST00000376864		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-intron	ENST00000413982	ENST00000359047		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-intron	ENST00000413982	ENST00000483186		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000334204	ENST00000361255		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000334204	ENST00000449912		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000334204	ENST00000451710		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000334204	ENST00000376872		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000334204	ENST00000360774		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
Frame-shit	ENST00000334204	ENST00000376871		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-intron	ENST00000334204	ENST00000376864		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-intron	ENST00000334204	ENST00000359047		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-intron	ENST00000334204	ENST00000483186		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000376347	ENST00000361255		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000376347	ENST00000449912		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000376347	ENST00000451710		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000376347	ENST00000376872		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000376347	ENST00000360774		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-3CDS	ENST00000376347	ENST00000376871		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-intron	ENST00000376347	ENST00000376864		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-intron	ENST00000376347	ENST00000359047		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
intron-intron	ENST00000376347	ENST00000483186		TCGA	RV	SARC	TCGA-K1-A6RU-01A	KIF27	chr9	86495212	-	TRPM6	chr9	77347652	-
5CDS-5UTR	ENST00000421865	ENST00000262051		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-5UTR	ENST00000421865	ENST00000547198		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-5UTR	ENST00000421865	ENST00000262052		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-5UTR	ENST00000421865	ENST00000394904		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-5UTR	ENST00000421865	ENST00000547688		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-5UTR	ENST00000421865	ENST00000541174		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-intron	ENST00000421865	ENST00000545993		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-5UTR	ENST00000421865	ENST00000546743		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
5CDS-intron	ENST00000421865	ENST00000549193		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000262051		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000547198		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000262052		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000394904		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000547688		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000541174		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-intron	ENST00000498257	ENST00000545993		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-5UTR	ENST00000498257	ENST00000546743		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
intron-intron	ENST00000498257	ENST00000549193		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	SLC11A2	chr12	51404549	-
Frame-shit	ENST00000524419	ENST00000241051		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
Frame-shit	ENST00000524419	ENST00000311388		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
Frame-shit	ENST00000528989	ENST00000241051		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
Frame-shit	ENST00000528989	ENST00000311388		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
Frame-shit	ENST00000315571	ENST00000241051		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
Frame-shit	ENST00000315571	ENST00000311388		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
intron-3CDS	ENST00000529759	ENST00000241051		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
intron-3CDS	ENST00000529759	ENST00000311388		TCGA	RV	SARC	TCGA-DX-A8BU-01A	LDLRAD3	chr11	36120011	+	DEPDC7	chr11	33054808	+
Frame-shit	ENST00000552864	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LIN7A	chr12	81283030	-	GRIP1	chr12	66859202	-
Frame-shit	ENST00000552864	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LIN7A	chr12	81283030	-	GRIP1	chr12	66859202	-
Frame-shit	ENST00000552864	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LIN7A	chr12	81283030	-	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000552864	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LIN7A	chr12	81283030	-	GRIP1	chr12	66859202	-
In-frame	ENST00000552864	ENST00000422113		TCGA	RV	SARC	TCGA-3B-A9HO-01A	LIN7A	chr12	81283030	-	TMEM132D	chr12	129569247	-
In-frame	ENST00000552864	ENST00000389441		TCGA	RV	SARC	TCGA-3B-A9HO-01A	LIN7A	chr12	81283030	-	TMEM132D	chr12	129569247	-
Frame-shit	ENST00000283415	ENST00000397786		TCGA	RV	SARC	TCGA-DX-A1L2-01A	LPCAT1	chr5	1501576	-	MED13	chr17	60024378	-
5CDS-intron	ENST00000283415	ENST00000580896		TCGA	RV	SARC	TCGA-DX-A1L2-01A	LPCAT1	chr5	1501576	-	MED13	chr17	60024378	-
intron-3CDS	ENST00000503252	ENST00000397786		TCGA	RV	SARC	TCGA-DX-A1L2-01A	LPCAT1	chr5	1501576	-	MED13	chr17	60024378	-
intron-intron	ENST00000503252	ENST00000580896		TCGA	RV	SARC	TCGA-DX-A1L2-01A	LPCAT1	chr5	1501576	-	MED13	chr17	60024378	-
Frame-shit	ENST00000545844	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000545844	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000545844	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000567887	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000567887	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000567887	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000372915	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000372915	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000372915	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000361689	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000361689	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000361689	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000539005	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000539005	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000539005	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000317713	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000317713	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000317713	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000564288	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000564288	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000564288	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000289893	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000289893	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-intron	ENST00000289893	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000536367	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
Frame-shit	ENST00000536367	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
5CDS-intron	ENST00000536367	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000484793	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000484793	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-intron	ENST00000484793	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000602421	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000602421	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-intron	ENST00000602421	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000476350	ENST00000432116		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-3CDS	ENST00000476350	ENST00000441885		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
intron-intron	ENST00000476350	ENST00000409168		TCGA	RV	SARC	TCGA-X6-A8C3-01A	MACF1	chr1	39723700	+	SHISA6	chr17	11282731	+
In-frame	ENST00000261483	ENST00000521530		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
Frame-shit	ENST00000261483	ENST00000354217		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-3UTR	ENST00000261483	ENST00000314512		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-3UTR	ENST00000261483	ENST00000521735		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000517929		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000520514		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000377888		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000360693		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000362016		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000519495		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5CDS-intron	ENST00000261483	ENST00000520086		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-3CDS	ENST00000505313	ENST00000521530		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-3CDS	ENST00000505313	ENST00000354217		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-3UTR	ENST00000505313	ENST00000314512		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-3UTR	ENST00000505313	ENST00000521735		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000517929		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000520514		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000377888		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000360693		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000362016		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000519495		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
intron-intron	ENST00000505313	ENST00000520086		TCGA	RV	SARC	TCGA-DX-A6YU-01A	MAN2A1	chr5	109125228	+	HTR4	chr5	147830835	-
5UTR-3CDS	ENST00000344686	ENST00000307877		TCGA	RV	SARC	TCGA-X6-A7W8-01A	MAP3K14	chr17	43362179	-	SRP68	chr17	74063411	-
5UTR-intron	ENST00000344686	ENST00000539137		TCGA	RV	SARC	TCGA-X6-A7W8-01A	MAP3K14	chr17	43362179	-	SRP68	chr17	74063411	-
5UTR-5UTR	ENST00000344686	ENST00000355113		TCGA	RV	SARC	TCGA-X6-A7W8-01A	MAP3K14	chr17	43362179	-	SRP68	chr17	74063411	-
5UTR-intron	ENST00000344686	ENST00000602720		TCGA	RV	SARC	TCGA-X6-A7W8-01A	MAP3K14	chr17	43362179	-	SRP68	chr17	74063411	-
5UTR-intron	ENST00000344686	ENST00000542536		TCGA	RV	SARC	TCGA-X6-A7W8-01A	MAP3K14	chr17	43362179	-	SRP68	chr17	74063411	-
Frame-shit	ENST00000255977	ENST00000457714		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000255977	ENST00000361589		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000255977	ENST00000401917		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000255977	ENST00000545397		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000255977	ENST00000466350		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000437223	ENST00000457714		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000437223	ENST00000361589		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000437223	ENST00000401917		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000437223	ENST00000545397		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3UTR	ENST00000437223	ENST00000466350		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000474576	ENST00000457714		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000474576	ENST00000361589		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000474576	ENST00000401917		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000474576	ENST00000545397		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000474576	ENST00000466350		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000480552	ENST00000457714		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000480552	ENST00000361589		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000480552	ENST00000401917		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000480552	ENST00000545397		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000480552	ENST00000466350		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000443720	ENST00000457714		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000443720	ENST00000361589		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000443720	ENST00000401917		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
Frame-shit	ENST00000443720	ENST00000545397		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5CDS-3UTR	ENST00000443720	ENST00000466350		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000481705	ENST00000457714		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000481705	ENST00000361589		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000481705	ENST00000401917		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3CDS	ENST00000481705	ENST00000545397		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
5UTR-3UTR	ENST00000481705	ENST00000466350		TCGA	RV	SARC	TCGA-DX-A23R-01A	MKRN1	chr7	140171683	-	NLGN1	chr3	173993105	+
In-frame	ENST00000282516	ENST00000282469		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000282516	ENST00000509059		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000282516	ENST00000356031		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000282516	ENST00000440995		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000282516	ENST00000303129		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000448238	ENST00000282469		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000448238	ENST00000509059		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000448238	ENST00000356031		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000448238	ENST00000440995		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
5CDS-intron	ENST00000448238	ENST00000303129		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
3UTR-3CDS	ENST00000504430	ENST00000282469		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
3UTR-3CDS	ENST00000504430	ENST00000509059		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
3UTR-3CDS	ENST00000504430	ENST00000356031		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
3UTR-3CDS	ENST00000504430	ENST00000440995		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
3UTR-intron	ENST00000504430	ENST00000303129		TCGA	RV	SARC	TCGA-DX-A8BM-01A	NIPBL	chr5	36976504	+	SPEF2	chr5	35628562	+
In-frame	ENST00000368009	ENST00000179259		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
5CDS-3UTR	ENST00000368009	ENST00000537251		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
In-frame	ENST00000368007	ENST00000179259		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
5CDS-3UTR	ENST00000368007	ENST00000537251		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
In-frame	ENST00000392190	ENST00000179259		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
5CDS-3UTR	ENST00000392190	ENST00000537251		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
In-frame	ENST00000368008	ENST00000179259		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
5CDS-3UTR	ENST00000368008	ENST00000537251		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
3UTR-3CDS	ENST00000496861	ENST00000179259		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
3UTR-3UTR	ENST00000496861	ENST00000537251		TCGA	RV	SARC	TCGA-DX-A240-01A	NIT1	chr1	161090022	+	C12orf5	chr12	4458985	+
5CDS-5UTR	ENST00000285968	ENST00000556881		TCGA	RV	SARC	TCGA-IW-A3M6-01A	NUP205	chr7	135282166	+	SERPINA12	chr14	94964767	-
5CDS-intron	ENST00000285968	ENST00000341228		TCGA	RV	SARC	TCGA-IW-A3M6-01A	NUP205	chr7	135282166	+	SERPINA12	chr14	94964767	-
5CDS-5UTR	ENST00000440390	ENST00000556881		TCGA	RV	SARC	TCGA-IW-A3M6-01A	NUP205	chr7	135282166	+	SERPINA12	chr14	94964767	-
5CDS-intron	ENST00000440390	ENST00000341228		TCGA	RV	SARC	TCGA-IW-A3M6-01A	NUP205	chr7	135282166	+	SERPINA12	chr14	94964767	-
intron-5UTR	ENST00000489493	ENST00000556881		TCGA	RV	SARC	TCGA-IW-A3M6-01A	NUP205	chr7	135282166	+	SERPINA12	chr14	94964767	-
intron-intron	ENST00000489493	ENST00000341228		TCGA	RV	SARC	TCGA-IW-A3M6-01A	NUP205	chr7	135282166	+	SERPINA12	chr14	94964767	-
5UTR-3CDS	ENST00000393249	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000393249	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000393249	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-intron	ENST00000393249	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000261183	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000261183	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000261183	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-intron	ENST00000261183	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000393250	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000393250	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000393250	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-intron	ENST00000393250	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000552178	ENST00000359019		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000552178	ENST00000334822		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-3CDS	ENST00000552178	ENST00000426126		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
5UTR-intron	ENST00000552178	ENST00000550789		TCGA	RV	SARC	TCGA-DX-A3LY-01B	OSBPL8	chr12	76953177	-	ZDHHC17	chr12	77199097	+
intron-3CDS	ENST00000523021	ENST00000369849		TCGA	RV	SARC	TCGA-HB-A3YV-01A	PDP1	chr8	94929307	+	INA	chr10	105046792	+
5UTR-3CDS	ENST00000297598	ENST00000369849		TCGA	RV	SARC	TCGA-HB-A3YV-01A	PDP1	chr8	94929307	+	INA	chr10	105046792	+
5UTR-3CDS	ENST00000520728	ENST00000369849		TCGA	RV	SARC	TCGA-HB-A3YV-01A	PDP1	chr8	94929307	+	INA	chr10	105046792	+
5UTR-3CDS	ENST00000396200	ENST00000369849		TCGA	RV	SARC	TCGA-HB-A3YV-01A	PDP1	chr8	94929307	+	INA	chr10	105046792	+
intron-3CDS	ENST00000517764	ENST00000369849		TCGA	RV	SARC	TCGA-HB-A3YV-01A	PDP1	chr8	94929307	+	INA	chr10	105046792	+
In-frame	ENST00000263666	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000263666	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000263666	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000263666	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000263666	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466780	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466780	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466780	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466780	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-intron	ENST00000466780	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000308537	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000308537	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000308537	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000308537	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
5CDS-intron	ENST00000308537	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000462146	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000462146	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000462146	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000462146	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-intron	ENST00000462146	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000535920	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000535920	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000535920	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000535920	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-intron	ENST00000535920	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000479530	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000479530	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000479530	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000479530	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-intron	ENST00000479530	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466348	ENST00000415676		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466348	ENST00000288197		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466348	ENST00000474759		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-3CDS	ENST00000466348	ENST00000490478		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
intron-intron	ENST00000466348	ENST00000478261		TCGA	RV	SARC	TCGA-LI-A9QH-01A	PDZRN3	chr3	73651505	-	CACNA2D3	chr3	54420742	+
In-frame	ENST00000262043	ENST00000255224		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
5CDS-intron	ENST00000262043	ENST00000586678		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
5CDS-intron	ENST00000262043	ENST00000590752		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
In-frame	ENST00000509330	ENST00000255224		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
5CDS-intron	ENST00000509330	ENST00000586678		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
5CDS-intron	ENST00000509330	ENST00000590752		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
In-frame	ENST00000393387	ENST00000255224		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
5CDS-intron	ENST00000393387	ENST00000586678		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
5CDS-intron	ENST00000393387	ENST00000590752		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
intron-3CDS	ENST00000420043	ENST00000255224		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
intron-intron	ENST00000420043	ENST00000586678		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
intron-intron	ENST00000420043	ENST00000590752		TCGA	RV	SARC	TCGA-SI-A71O-01A	PHF3	chr6	64356700	+	SYT4	chr18	40854359	-
In-frame	ENST00000444397	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000444397	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000444397	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000360694	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000360694	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000360694	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000418635	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000418635	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000418635	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
intron-3CDS	ENST00000448077	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
intron-3CDS	ENST00000448077	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
intron-3CDS	ENST00000448077	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000337400	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000337400	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000337400	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000311565	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000311565	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
In-frame	ENST00000311565	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
intron-3CDS	ENST00000540939	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
intron-3CDS	ENST00000540939	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
intron-3CDS	ENST00000540939	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PPARD	chr6	35378994	+	SRGAP1	chr12	64502712	+
5CDS-5UTR	ENST00000257181	ENST00000378442		TCGA	RV	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14870271	-
5CDS-5UTR	ENST00000257181	ENST00000378441		TCGA	RV	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14870271	-
intron-5UTR	ENST00000474048	ENST00000378442		TCGA	RV	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14870271	-
intron-5UTR	ENST00000474048	ENST00000378441		TCGA	RV	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14870271	-
In-frame	ENST00000381196	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000381196	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000360074	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000360074	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000537002	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000537002	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000397617	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000397617	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000358503	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000358503	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000397611	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000397611	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000355233	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000355233	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
In-frame	ENST00000356435	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
5CDS-intron	ENST00000356435	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-3CDS	ENST00000540109	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-intron	ENST00000540109	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-3CDS	ENST00000486161	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-intron	ENST00000486161	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-3CDS	ENST00000397606	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-intron	ENST00000397606	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-3CDS	ENST00000463477	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-intron	ENST00000463477	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-3CDS	ENST00000471274	ENST00000261180		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-intron	ENST00000471274	ENST00000549138		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8314247	-	TRHDE	chr12	72666463	+
intron-3CDS	ENST00000302000	ENST00000316623		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PYGO1	chr15	55880033	-	FBN1	chr15	48791235	-
intron-intron	ENST00000302000	ENST00000561429		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PYGO1	chr15	55880033	-	FBN1	chr15	48791235	-
intron-intron	ENST00000302000	ENST00000560355		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PYGO1	chr15	55880033	-	FBN1	chr15	48791235	-
Frame-shit	ENST00000563719	ENST00000316623		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PYGO1	chr15	55880033	-	FBN1	chr15	48791235	-
5CDS-intron	ENST00000563719	ENST00000561429		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PYGO1	chr15	55880033	-	FBN1	chr15	48791235	-
5CDS-intron	ENST00000563719	ENST00000560355		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PYGO1	chr15	55880033	-	FBN1	chr15	48791235	-
5UTR-3CDS	ENST00000424082	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000424082	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000424082	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000259351	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000259351	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000259351	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000394022	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000394022	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000394022	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000373436	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000373436	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000373436	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000373434	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000373434	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000373434	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000394011	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000394011	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
5UTR-3CDS	ENST00000394011	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000480993	ENST00000368559		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000480993	ENST00000368553		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
intron-3CDS	ENST00000480993	ENST00000271854		TCGA	RV	SARC	TCGA-K1-A6RT-01A	RALGPS1	chr9	129677291	+	NUP210L	chr1	153967656	-
Frame-shit	ENST00000274376	ENST00000282268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000274376	ENST00000338635		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000274376	ENST00000396027		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000274376	ENST00000511817		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
5CDS-intron	ENST00000274376	ENST00000509268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000456692	ENST00000282268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000456692	ENST00000338635		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000456692	ENST00000396027		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000456692	ENST00000511817		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
5CDS-intron	ENST00000456692	ENST00000509268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000512763	ENST00000282268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000512763	ENST00000338635		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000512763	ENST00000396027		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000512763	ENST00000511817		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
5CDS-intron	ENST00000512763	ENST00000509268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000506290	ENST00000282268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000506290	ENST00000338635		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
In-frame	ENST00000506290	ENST00000396027		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
Frame-shit	ENST00000506290	ENST00000511817		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
5CDS-intron	ENST00000506290	ENST00000509268		TCGA	RV	SARC	TCGA-K1-A6RV-01A	RASA1	chr5	86645181	+	XRCC4	chr5	82648944	+
5CDS-5UTR	ENST00000368802	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000368802	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000368802	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000368802	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000368805	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000368805	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000368805	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000368805	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000435970	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000435970	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000435970	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000435970	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000358835	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-5UTR	ENST00000358835	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000358835	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5CDS-intron	ENST00000358835	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
intron-5UTR	ENST00000462119	ENST00000551577		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
intron-5UTR	ENST00000462119	ENST00000266534		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
intron-intron	ENST00000462119	ENST00000536799		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
intron-intron	ENST00000462119	ENST00000546978		TCGA	RV	SARC	TCGA-DX-A1L4-01A	REV3L	chr6	111643772	-	TMEM117	chr12	44238427	+
5UTR-3CDS	ENST00000262544	ENST00000377026		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-3CDS	ENST00000262544	ENST00000398425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-3CDS	ENST00000262544	ENST00000432543		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-5UTR	ENST00000262544	ENST00000472855		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000336714	ENST00000377026		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000336714	ENST00000398425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000336714	ENST00000432543		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-5UTR	ENST00000336714	ENST00000472855		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-3CDS	ENST00000377475	ENST00000377026		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-3CDS	ENST00000377475	ENST00000398425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-3CDS	ENST00000377475	ENST00000432543		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
5UTR-5UTR	ENST00000377475	ENST00000472855		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000377465	ENST00000377026		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000377465	ENST00000398425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000377465	ENST00000432543		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-5UTR	ENST00000377465	ENST00000472855		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000494645	ENST00000377026		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000494645	ENST00000398425		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-3CDS	ENST00000494645	ENST00000432543		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
intron-5UTR	ENST00000494645	ENST00000472855		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	SEC23B	chr20	18488634	+	NAPB	chr20	23361954	-
In-frame	ENST00000506866	ENST00000355458		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
In-frame	ENST00000506866	ENST00000264990		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5CDS-5UTR	ENST00000506866	ENST00000545291		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5CDS-5UTR	ENST00000506866	ENST00000481970		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5CDS-intron	ENST00000506866	ENST00000489991		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
In-frame	ENST00000274031	ENST00000355458		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
In-frame	ENST00000274031	ENST00000264990		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5CDS-5UTR	ENST00000274031	ENST00000545291		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5CDS-5UTR	ENST00000274031	ENST00000481970		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5CDS-intron	ENST00000274031	ENST00000489991		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-3CDS	ENST00000404104	ENST00000355458		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-3CDS	ENST00000404104	ENST00000264990		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-5UTR	ENST00000404104	ENST00000545291		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-5UTR	ENST00000404104	ENST00000481970		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-intron	ENST00000404104	ENST00000489991		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-3CDS	ENST00000406354	ENST00000355458		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-3CDS	ENST00000406354	ENST00000264990		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-5UTR	ENST00000406354	ENST00000545291		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-5UTR	ENST00000406354	ENST00000481970		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-intron	ENST00000406354	ENST00000489991		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-3CDS	ENST00000608958	ENST00000355458		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-3CDS	ENST00000608958	ENST00000264990		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-5UTR	ENST00000608958	ENST00000545291		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-5UTR	ENST00000608958	ENST00000481970		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
intron-intron	ENST00000608958	ENST00000489991		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SETD7	chr4	140439039	-	ACAD11	chr3	132363740	-
5UTR-5UTR	ENST00000341259	ENST00000389153		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-5UTR	ENST00000341259	ENST00000608853		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-5UTR	ENST00000341259	ENST00000377617		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-5UTR	ENST00000341259	ENST00000550104		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-5UTR	ENST00000341259	ENST00000542287		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-intron	ENST00000341259	ENST00000535949		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-intron	ENST00000341259	ENST00000549455		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000538307	ENST00000389153		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000538307	ENST00000608853		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000538307	ENST00000377617		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000538307	ENST00000550104		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000538307	ENST00000542287		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-intron	ENST00000538307	ENST00000535949		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
intron-intron	ENST00000538307	ENST00000549455		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SH2B3	chr12	111844081	+	ATXN2	chr12	111993723	-
5UTR-intron	ENST00000380752	ENST00000374079		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
5UTR-5UTR	ENST00000380752	ENST00000307564		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
5UTR-5UTR	ENST00000380752	ENST00000374088		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
5UTR-intron	ENST00000380752	ENST00000492875		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
5UTR-intron	ENST00000380752	ENST00000223791		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
5UTR-intron	ENST00000380752	ENST00000374075		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
5UTR-5UTR	ENST00000380752	ENST00000312033		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-intron	ENST00000473577	ENST00000374079		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-5UTR	ENST00000473577	ENST00000307564		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-5UTR	ENST00000473577	ENST00000374088		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-intron	ENST00000473577	ENST00000492875		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-intron	ENST00000473577	ENST00000223791		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-intron	ENST00000473577	ENST00000374075		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
intron-5UTR	ENST00000473577	ENST00000312033		TCGA	RV	SARC	TCGA-JV-A75J-01A	SLC7A1	chr13	30169553	-	AKNA	chr9	117143726	-
Frame-shit	ENST00000415083	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000415083	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000415083	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000415083	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
In-frame	ENST00000542420	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
In-frame	ENST00000542420	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
In-frame	ENST00000542420	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000542420	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000542743	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000542743	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000542743	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000542743	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000539849	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000539849	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
intron-3CDS	ENST00000539849	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
intron-intron	ENST00000539849	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000269137	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000269137	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000269137	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000269137	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000545952	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000545952	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000545952	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000545952	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000585241	ENST00000361524		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000585241	ENST00000584787		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000585241	ENST00000538137		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
5UTR-intron	ENST00000585241	ENST00000579111		TCGA	RV	SARC	TCGA-DX-AATS-01A	SS18	chr18	23658040	-	ZNF521	chr18	22672045	-
In-frame	ENST00000373644	ENST00000374076		TCGA	RV	SARC	TCGA-IF-A4AK-01A	TET1	chr10	70411693	+	TMEM222	chr1	27660449	+
In-frame	ENST00000373644	ENST00000608611		TCGA	RV	SARC	TCGA-IF-A4AK-01A	TET1	chr10	70411693	+	TMEM222	chr1	27660449	+
Frame-shit	ENST00000434316	ENST00000400921		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
Frame-shit	ENST00000434316	ENST00000400920		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
5CDS-3UTR	ENST00000434316	ENST00000479263		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
intron-3CDS	ENST00000375391	ENST00000400921		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
intron-3CDS	ENST00000375391	ENST00000400920		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
intron-3UTR	ENST00000375391	ENST00000479263		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
intron-3CDS	ENST00000474393	ENST00000400921		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
intron-3CDS	ENST00000474393	ENST00000400920		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
intron-3UTR	ENST00000474393	ENST00000479263		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	PRKCZ	chr1	2100957	+
In-frame	ENST00000551577	ENST00000338193		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
5CDS-5UTR	ENST00000551577	ENST00000552408		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
In-frame	ENST00000266534	ENST00000338193		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
5CDS-5UTR	ENST00000266534	ENST00000552408		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
Frame-shit	ENST00000536799	ENST00000338193		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
5CDS-5UTR	ENST00000536799	ENST00000552408		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
intron-3CDS	ENST00000546978	ENST00000338193		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
intron-5UTR	ENST00000546978	ENST00000552408		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TMEM117	chr12	44238731	+	PRIM1	chr12	57144979	-
In-frame	ENST00000233047	ENST00000007516		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000233047	ENST00000570319		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000572258	ENST00000007516		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000572258	ENST00000570319		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
3UTR-3CDS	ENST00000574092	ENST00000007516		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
3UTR-3CDS	ENST00000574092	ENST00000570319		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000261388	ENST00000007516		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000261388	ENST00000570319		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000451578	ENST00000007516		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000451578	ENST00000570319		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000572599	ENST00000007516		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
In-frame	ENST00000572599	ENST00000570319		TCGA	RV	SARC	TCGA-DX-AB3A-01A	TMEM159	chr16	21172599	+	NDUFAB1	chr16	23598640	-
5CDS-intron	ENST00000266712	ENST00000547691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TMTC3	chr12	88542281	+	CEP290	chr12	88502958	-
5CDS-intron	ENST00000266712	ENST00000552810		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TMTC3	chr12	88542281	+	CEP290	chr12	88502958	-
5CDS-5UTR	ENST00000266712	ENST00000397838		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TMTC3	chr12	88542281	+	CEP290	chr12	88502958	-
5CDS-5UTR	ENST00000266712	ENST00000309041		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TMTC3	chr12	88542281	+	CEP290	chr12	88502958	-
5CDS-intron	ENST00000379056	ENST00000438045		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000379056	ENST00000248633		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000379056	ENST00000428214		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
5CDS-intron	ENST00000379056	ENST00000541751		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000529421	ENST00000438045		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000529421	ENST00000248633		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000529421	ENST00000428214		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000529421	ENST00000541751		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000530705	ENST00000438045		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000530705	ENST00000248633		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000530705	ENST00000428214		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000530705	ENST00000541751		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379060	ENST00000438045		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379060	ENST00000248633		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379060	ENST00000428214		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379060	ENST00000541751		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379055	ENST00000438045		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379055	ENST00000248633		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379055	ENST00000428214		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000379055	ENST00000541751		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000309246	ENST00000438045		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000309246	ENST00000248633		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000309246	ENST00000428214		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
intron-intron	ENST00000309246	ENST00000541751		TCGA	RV	SARC	TCGA-K1-A42X-02A	TPT1	chr13	45911008	-	PEX1	chr7	92146729	-
5UTR-5UTR	ENST00000520358	ENST00000302917		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TSPAN18	chr11	44882020	+	TEX13B	chrX	107225389	-
5UTR-5UTR	ENST00000340160	ENST00000302917		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TSPAN18	chr11	44882020	+	TEX13B	chrX	107225389	-
In-frame	ENST00000353024	ENST00000316005		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000353024	ENST00000370521		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000353024	ENST00000370505		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000353024	ENST00000370513		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000353024	ENST00000544045		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000353024	ENST00000495119		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000392712	ENST00000316005		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000392712	ENST00000370521		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000392712	ENST00000370505		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000392712	ENST00000370513		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000392712	ENST00000544045		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000392712	ENST00000495119		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000368849	ENST00000316005		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000368849	ENST00000370521		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368849	ENST00000370505		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368849	ENST00000370513		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368849	ENST00000544045		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368849	ENST00000495119		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000368848	ENST00000316005		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
In-frame	ENST00000368848	ENST00000370521		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368848	ENST00000370505		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368848	ENST00000370513		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368848	ENST00000544045		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-intron	ENST00000368848	ENST00000495119		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5UTR-3CDS	ENST00000538902	ENST00000316005		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5UTR-3CDS	ENST00000538902	ENST00000370521		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5UTR-intron	ENST00000538902	ENST00000370505		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5UTR-intron	ENST00000538902	ENST00000370513		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5UTR-intron	ENST00000538902	ENST00000544045		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5UTR-intron	ENST00000538902	ENST00000495119		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUFT1	chr1	151512902	+	PKN2	chr1	89206671	+
5CDS-5UTR	ENST00000293218	ENST00000393328		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000293218	ENST00000393331		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000293218	ENST00000347630		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000293218	ENST00000504102		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000293218	ENST00000503676		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000293218	ENST00000513080		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000589666	ENST00000393328		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000589666	ENST00000393331		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000589666	ENST00000347630		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000589666	ENST00000504102		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000589666	ENST00000503676		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000589666	ENST00000513080		TCGA	RV	SARC	TCGA-3B-A9HS-01A	UNK	chr17	73781065	+	SPOP	chr17	47700238	-
Frame-shit	ENST00000582707	ENST00000261592		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000582707	ENST00000269185		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000582707	ENST00000535384		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000582707	ENST00000535475		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000582707	ENST00000589544		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000582707	ENST00000538587		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
5CDS-intron	ENST00000582707	ENST00000590846		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000400266	ENST00000261592		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000400266	ENST00000269185		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000400266	ENST00000535384		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000400266	ENST00000535475		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000400266	ENST00000589544		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000400266	ENST00000538587		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
5CDS-intron	ENST00000400266	ENST00000590846		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000383589	ENST00000261592		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000383589	ENST00000269185		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000383589	ENST00000535384		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000383589	ENST00000535475		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000383589	ENST00000589544		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000383589	ENST00000538587		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
5CDS-intron	ENST00000383589	ENST00000590846		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000261601	ENST00000261592		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000261601	ENST00000269185		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000261601	ENST00000535384		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000261601	ENST00000535475		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000261601	ENST00000589544		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000261601	ENST00000538587		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
5CDS-intron	ENST00000261601	ENST00000590846		TCGA	RV	SARC	TCGA-DX-A48L-01A	USP14	chr18	180339	+	NOL4	chr18	31463388	-
Frame-shit	ENST00000367545	ENST00000251691		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144898424	+	KIAA1244	chr6	138491799	+
intron-3CDS	ENST00000367526	ENST00000251691		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144898424	+	KIAA1244	chr6	138491799	+
intron-3CDS	ENST00000480333	ENST00000251691		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144898424	+	KIAA1244	chr6	138491799	+
In-frame	ENST00000367545	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A48N-01A	UTRN	chr6	145051622	+	OSTF1	chr9	77732420	+
In-frame	ENST00000367526	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A48N-01A	UTRN	chr6	145051622	+	OSTF1	chr9	77732420	+
intron-3CDS	ENST00000480333	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A48N-01A	UTRN	chr6	145051622	+	OSTF1	chr9	77732420	+
In-frame	ENST00000367545	ENST00000286574		TCGA	RV	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144809970	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000367526	ENST00000286574		TCGA	RV	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144809970	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000480333	ENST00000286574		TCGA	RV	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144809970	+	WIF1	chr12	65471634	-
In-frame	ENST00000359774	ENST00000415708		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000359774	ENST00000428395		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000359774	ENST00000241502		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000359774	ENST00000424384		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-intron	ENST00000359774	ENST00000492360		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
In-frame	ENST00000358147	ENST00000415708		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000358147	ENST00000428395		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000358147	ENST00000241502		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000358147	ENST00000424384		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-intron	ENST00000358147	ENST00000492360		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
Frame-shit	ENST00000392796	ENST00000415708		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000392796	ENST00000428395		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000392796	ENST00000241502		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000392796	ENST00000424384		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-intron	ENST00000392796	ENST00000492360		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
Frame-shit	ENST00000409990	ENST00000415708		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000409990	ENST00000428395		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000409990	ENST00000241502		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000409990	ENST00000424384		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-intron	ENST00000409990	ENST00000492360		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
In-frame	ENST00000409124	ENST00000415708		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000409124	ENST00000428395		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000409124	ENST00000241502		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000409124	ENST00000424384		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-intron	ENST00000409124	ENST00000492360		TCGA	RV	SARC	TCGA-IE-A3OV-01A	WDSUB1	chr2	160132057	-	FYTTD1	chr3	197483297	+
5CDS-5UTR	ENST00000367590	ENST00000367674		TCGA	RV	SARC	TCGA-DX-A1L0-01A	XPR1	chr1	180601406	+	TNR	chr1	175497505	-
5CDS-5UTR	ENST00000367590	ENST00000263525		TCGA	RV	SARC	TCGA-DX-A1L0-01A	XPR1	chr1	180601406	+	TNR	chr1	175497505	-
5CDS-5UTR	ENST00000367589	ENST00000367674		TCGA	RV	SARC	TCGA-DX-A1L0-01A	XPR1	chr1	180601406	+	TNR	chr1	175497505	-
5CDS-5UTR	ENST00000367589	ENST00000263525		TCGA	RV	SARC	TCGA-DX-A1L0-01A	XPR1	chr1	180601406	+	TNR	chr1	175497505	-
intron-5UTR	ENST00000467345	ENST00000367674		TCGA	RV	SARC	TCGA-DX-A1L0-01A	XPR1	chr1	180601406	+	TNR	chr1	175497505	-
intron-5UTR	ENST00000467345	ENST00000263525		TCGA	RV	SARC	TCGA-DX-A1L0-01A	XPR1	chr1	180601406	+	TNR	chr1	175497505	-
In-frame	ENST00000261381	ENST00000302538		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000261381	ENST00000544583		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000261381	ENST00000572441		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000261381	ENST00000574437		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000261381	ENST00000291107		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000261381	ENST00000543210		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000261381	ENST00000536794		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000261381	ENST00000573895		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-3CDS	ENST00000568226	ENST00000302538		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-5UTR	ENST00000568226	ENST00000544583		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-intron	ENST00000568226	ENST00000572441		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-5UTR	ENST00000568226	ENST00000574437		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-intron	ENST00000568226	ENST00000291107		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-intron	ENST00000568226	ENST00000543210		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-intron	ENST00000568226	ENST00000536794		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
intron-intron	ENST00000568226	ENST00000573895		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	XYLT1	chr16	17352845	-	ABR	chr17	1028702	-
Frame-shit	ENST00000336755	ENST00000396787		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
Frame-shit	ENST00000336755	ENST00000378495		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
Frame-shit	ENST00000336755	ENST00000378496		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
5CDS-intron	ENST00000336755	ENST00000481299		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000534928	ENST00000396787		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000534928	ENST00000378495		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
intron-3CDS	ENST00000534928	ENST00000378496		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
intron-intron	ENST00000534928	ENST00000481299		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
3UTR-3CDS	ENST00000461038	ENST00000396787		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
3UTR-3CDS	ENST00000461038	ENST00000378495		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
3UTR-3CDS	ENST00000461038	ENST00000378496		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
3UTR-intron	ENST00000461038	ENST00000481299		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
Frame-shit	ENST00000322831	ENST00000396787		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
Frame-shit	ENST00000322831	ENST00000378495		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
Frame-shit	ENST00000322831	ENST00000378496		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
5CDS-intron	ENST00000322831	ENST00000481299		TCGA	RV	SARC	TCGA-DX-A8BH-01A	ZCCHC7	chr9	37126939	+	UNC13B	chr9	35366944	+
In-frame	ENST00000600692	ENST00000455140		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000600692	ENST00000248070		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000600692	ENST00000535753		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000600692	ENST00000594975		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000600692	ENST00000602009		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000600692	ENST00000597937		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000599296	ENST00000455140		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000599296	ENST00000248070		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000599296	ENST00000535753		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000599296	ENST00000594975		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000599296	ENST00000602009		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000599296	ENST00000597937		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000594425	ENST00000455140		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000594425	ENST00000248070		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000594425	ENST00000535753		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000594425	ENST00000594975		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000594425	ENST00000602009		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000594425	ENST00000597937		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000311048	ENST00000455140		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000311048	ENST00000248070		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000311048	ENST00000535753		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000311048	ENST00000594975		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000311048	ENST00000602009		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
In-frame	ENST00000311048	ENST00000597937		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000594821	ENST00000455140		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000594821	ENST00000248070		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000594821	ENST00000535753		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000594821	ENST00000594975		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000594821	ENST00000602009		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000594821	ENST00000597937		TCGA	RV	SARC	TCGA-X6-A7WC-01A	ZNF431	chr19	21326446	+	EPS15L1	chr19	16528448	-
5CDS-5UTR	ENST00000369238	ENST00000369299		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000369238	ENST00000393045		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000369238	ENST00000369298		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
intron-5UTR	ENST00000460583	ENST00000369299		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
intron-5UTR	ENST00000460583	ENST00000393045		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
intron-5UTR	ENST00000460583	ENST00000369298		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000392988	ENST00000369299		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000392988	ENST00000393045		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
5CDS-5UTR	ENST00000392988	ENST00000369298		TCGA	RV	SARC	TCGA-DX-AB3A-01A	ACP6	chr1	147141952	-	PIAS3	chr1	145578062	+
intron-5UTR	ENST00000395146	ENST00000609438		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
intron-5UTR	ENST00000395146	ENST00000333209		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
5CDS-5UTR	ENST00000307808	ENST00000609438		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
5CDS-5UTR	ENST00000307808	ENST00000333209		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
5UTR-5UTR	ENST00000544085	ENST00000609438		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
5UTR-5UTR	ENST00000544085	ENST00000333209		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
intron-5UTR	ENST00000511996	ENST00000609438		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
intron-5UTR	ENST00000511996	ENST00000333209		TCGA	RV	SARC	TCGA-DX-A8BU-01A	AFF1	chr4	87928576	+	GPRIN3	chr4	90171384	-
In-frame	ENST00000505113	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
In-frame	ENST00000505113	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
5CDS-intron	ENST00000505113	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
In-frame	ENST00000316418	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
In-frame	ENST00000316418	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
5CDS-intron	ENST00000316418	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000512529	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000512529	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-intron	ENST00000512529	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000515206	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000515206	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-intron	ENST00000515206	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000506456	ENST00000537081		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000506456	ENST00000257861		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
intron-intron	ENST00000506456	ENST00000550083		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	AHRR	chr5	376831	+	AVIL	chr12	58193703	-
Frame-shit	ENST00000265748	ENST00000399322		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000265748	ENST00000258767		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000265748	ENST00000403951		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000265748	ENST00000402815		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000265748	ENST00000407950		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000265748	ENST00000444700		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000265748	ENST00000406247		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
5CDS-5UTR	ENST00000265748	ENST00000403963		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000399322		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000258767		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000403951		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000402815		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000407950		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000444700		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
Frame-shit	ENST00000396068	ENST00000406247		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
5CDS-5UTR	ENST00000396068	ENST00000403963		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000399322		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000258767		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000403951		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000402815		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000407950		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000444700		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-3CDS	ENST00000495714	ENST00000406247		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
intron-5UTR	ENST00000495714	ENST00000403963		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36436028	+	DGKB	chr7	14517850	-
3UTR-intron	ENST00000426898	ENST00000374553		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
3UTR-intron	ENST00000426898	ENST00000374552		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
3UTR-intron	ENST00000426898	ENST00000524573		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
3UTR-intron	ENST00000426898	ENST00000525810		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
3UTR-3UTR	ENST00000426898	ENST00000527388		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
3UTR-intron	ENST00000426898	ENST00000502251		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
3UTR-intron	ENST00000426898	ENST00000338901		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000425752	ENST00000374553		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000425752	ENST00000374552		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000425752	ENST00000524573		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000425752	ENST00000525810		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000425752	ENST00000527388		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000425752	ENST00000502251		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000425752	ENST00000338901		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000423947	ENST00000374553		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000423947	ENST00000374552		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000423947	ENST00000524573		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000423947	ENST00000525810		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000423947	ENST00000527388		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000423947	ENST00000502251		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000423947	ENST00000338901		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000435642	ENST00000374553		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000435642	ENST00000374552		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000435642	ENST00000524573		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000435642	ENST00000525810		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000435642	ENST00000527388		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000435642	ENST00000502251		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000435642	ENST00000338901		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000320560	ENST00000374553		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000320560	ENST00000374552		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000320560	ENST00000524573		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000320560	ENST00000525810		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000320560	ENST00000527388		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000320560	ENST00000502251		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000320560	ENST00000338901		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000441606	ENST00000374553		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000441606	ENST00000374552		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000441606	ENST00000524573		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000441606	ENST00000525810		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-3UTR	ENST00000441606	ENST00000527388		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000441606	ENST00000502251		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
5CDS-intron	ENST00000441606	ENST00000338901		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANO6	chr12	45797319	+	EDA	chrX	69080688	+
Frame-shit	ENST00000265381	ENST00000374263		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
Frame-shit	ENST00000265381	ENST00000374270		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
Frame-shit	ENST00000265381	ENST00000374264		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000265381	ENST00000482851		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000470082	ENST00000374263		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000470082	ENST00000374270		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
intron-3CDS	ENST00000470082	ENST00000374264		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
intron-intron	ENST00000470082	ENST00000482851		TCGA	RV	SARC	TCGA-K1-A6RU-01A	APBA1	chr9	72071163	-	SUSD1	chr9	114804240	-
5CDS-intron	ENST00000258530	ENST00000550574		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000258530	ENST00000541364		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000258530	ENST00000301072		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000258530	ENST00000549183		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000539978	ENST00000550574		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000539978	ENST00000541364		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000539978	ENST00000301072		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000539978	ENST00000549183		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000546731	ENST00000550574		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000546731	ENST00000541364		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000546731	ENST00000301072		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000546731	ENST00000549183		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000551662	ENST00000550574		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000551662	ENST00000541364		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000551662	ENST00000301072		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5CDS-intron	ENST00000551662	ENST00000549183		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000549573	ENST00000550574		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000549573	ENST00000541364		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000549573	ENST00000301072		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
intron-intron	ENST00000549573	ENST00000549183		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	APPL2	chr12	105622903	-	TUBA1C	chr12	49663248	+
5UTR-3CDS	ENST00000548446	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000548446	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000548446	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-3CDS	ENST00000420353	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000420353	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000420353	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-3CDS	ENST00000415113	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000415113	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000415113	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-3CDS	ENST00000456903	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000456903	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000456903	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-3CDS	ENST00000548118	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000548118	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000548118	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-3CDS	ENST00000591397	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000591397	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
5UTR-intron	ENST00000591397	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-3CDS	ENST00000328463	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000328463	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000328463	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-3CDS	ENST00000546661	ENST00000261267		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000546661	ENST00000549690		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
intron-intron	ENST00000546661	ENST00000548839		TCGA	RV	SARC	TCGA-X6-A8C6-01A	ATF7	chr12	54020063	-	LYZ	chr12	69746000	+
In-frame	ENST00000308664	ENST00000380518		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
5CDS-5UTR	ENST00000308664	ENST00000493991		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
5CDS-5UTR	ENST00000308664	ENST00000337299		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
In-frame	ENST00000395494	ENST00000380518		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
5CDS-5UTR	ENST00000395494	ENST00000493991		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
5CDS-5UTR	ENST00000395494	ENST00000337299		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
In-frame	ENST00000539276	ENST00000380518		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
5CDS-5UTR	ENST00000539276	ENST00000493991		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
5CDS-5UTR	ENST00000539276	ENST00000337299		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-3CDS	ENST00000550248	ENST00000380518		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-5UTR	ENST00000550248	ENST00000493991		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-5UTR	ENST00000550248	ENST00000337299		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-3CDS	ENST00000552636	ENST00000380518		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-5UTR	ENST00000552636	ENST00000493991		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-5UTR	ENST00000552636	ENST00000337299		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ATP2A2	chr12	110771948	+	COL2A1	chr12	48378382	-
intron-3CDS	ENST00000348959	ENST00000378454		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-intron	ENST00000348959	ENST00000378450		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-3CDS	ENST00000261173	ENST00000378454		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-intron	ENST00000261173	ENST00000378450		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-3CDS	ENST00000359142	ENST00000378454		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-intron	ENST00000359142	ENST00000378450		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-3CDS	ENST00000428670	ENST00000378454		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-intron	ENST00000428670	ENST00000378450		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-3CDS	ENST00000393164	ENST00000378454		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
intron-intron	ENST00000393164	ENST00000378450		TCGA	RV	SARC	TCGA-DX-A3U5-01A	ATP2B1	chr12	90102996	-	DCDC2	chr6	24302272	-
In-frame	ENST00000179259	ENST00000399448		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
5CDS-intron	ENST00000179259	ENST00000447931		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
5CDS-intron	ENST00000179259	ENST00000318974		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
5CDS-intron	ENST00000179259	ENST00000456013		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
5CDS-intron	ENST00000179259	ENST00000539029		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
intron-3CDS	ENST00000537251	ENST00000399448		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
intron-intron	ENST00000537251	ENST00000447931		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
intron-intron	ENST00000537251	ENST00000318974		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
intron-intron	ENST00000537251	ENST00000456013		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
intron-intron	ENST00000537251	ENST00000539029		TCGA	RV	SARC	TCGA-FX-A3TO-01A	C12orf5	chr12	4430469	+	PTPN6	chr12	7060772	+
5CDS-3UTR	ENST00000369449	ENST00000468306		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000369449	ENST00000370401		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000369449	ENST00000432680		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000369449	ENST00000262858		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5CDS-3UTR	ENST00000369449	ENST00000426613		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5CDS-intron	ENST00000369449	ENST00000455522		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5UTR-3UTR	ENST00000465553	ENST00000468306		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5UTR-3UTR	ENST00000465553	ENST00000370401		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5UTR-3UTR	ENST00000465553	ENST00000432680		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5UTR-3UTR	ENST00000465553	ENST00000262858		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5UTR-3UTR	ENST00000465553	ENST00000426613		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
5UTR-intron	ENST00000465553	ENST00000455522		TCGA	RV	SARC	TCGA-DX-A1KX-01A	CLIC2	chrX	154563680	-	MAMLD1	chrX	149638017	+
intron-3CDS	ENST00000543948	ENST00000261381		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-5UTR	ENST00000543948	ENST00000568226		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
5UTR-3CDS	ENST00000219599	ENST00000261381		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
5UTR-5UTR	ENST00000219599	ENST00000568226		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-3CDS	ENST00000415987	ENST00000261381		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-5UTR	ENST00000415987	ENST00000568226		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-3CDS	ENST00000396023	ENST00000261381		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-5UTR	ENST00000396023	ENST00000568226		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-3CDS	ENST00000574787	ENST00000261381		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
intron-5UTR	ENST00000574787	ENST00000568226		TCGA	RV	SARC	TCGA-DX-A6YR-01A	CRYM	chr16	21314299	-	XYLT1	chr16	17451907	-
In-frame	ENST00000310193	ENST00000371730		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
In-frame	ENST00000310193	ENST00000371733		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000310193	ENST00000396122		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000310193	ENST00000493793		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5UTR-3CDS	ENST00000523954	ENST00000371730		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5UTR-3CDS	ENST00000523954	ENST00000371733		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5UTR-intron	ENST00000523954	ENST00000396122		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5UTR-intron	ENST00000523954	ENST00000493793		TCGA	RV	SARC	TCGA-PC-A5DO-01A	CYP7B1	chr8	65517239	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000360909	ENST00000555545		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000360909	ENST00000261245		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000360909	ENST00000539616		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000351081	ENST00000555545		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000351081	ENST00000261245		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000351081	ENST00000539616		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000395125	ENST00000555545		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000395125	ENST00000261245		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
5CDS-intron	ENST00000395125	ENST00000539616		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000556135	ENST00000555545		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000556135	ENST00000261245		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000556135	ENST00000539616		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000553966	ENST00000555545		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000553966	ENST00000261245		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
intron-intron	ENST00000553966	ENST00000539616		TCGA	RV	SARC	TCGA-WP-A9GB-01A	DAAM1	chr14	59798638	+	MNAT1	chr14	61346432	+
Frame-shit	ENST00000428559	ENST00000317089		TCGA	RV	SARC	TCGA-DX-A23R-01A	DERA	chr12	16064348	+	DNAJA2	chr16	47005867	-
Frame-shit	ENST00000532964	ENST00000317089		TCGA	RV	SARC	TCGA-DX-A23R-01A	DERA	chr12	16064348	+	DNAJA2	chr16	47005867	-
intron-3CDS	ENST00000526530	ENST00000317089		TCGA	RV	SARC	TCGA-DX-A23R-01A	DERA	chr12	16064348	+	DNAJA2	chr16	47005867	-
intron-3CDS	ENST00000532573	ENST00000317089		TCGA	RV	SARC	TCGA-DX-A23R-01A	DERA	chr12	16064348	+	DNAJA2	chr16	47005867	-
In-frame	ENST00000311085	ENST00000210444		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DMXL1	chr5	118407351	+	NANS	chr9	100843098	+
5CDS-3UTR	ENST00000311085	ENST00000461452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DMXL1	chr5	118407351	+	NANS	chr9	100843098	+
In-frame	ENST00000539542	ENST00000210444		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DMXL1	chr5	118407351	+	NANS	chr9	100843098	+
5CDS-3UTR	ENST00000539542	ENST00000461452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DMXL1	chr5	118407351	+	NANS	chr9	100843098	+
intron-3CDS	ENST00000505312	ENST00000210444		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DMXL1	chr5	118407351	+	NANS	chr9	100843098	+
intron-3UTR	ENST00000505312	ENST00000461452		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DMXL1	chr5	118407351	+	NANS	chr9	100843098	+
Frame-shit	ENST00000521913	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000521913	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000521913	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000521913	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000521913	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000311151	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000311151	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000311151	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000311151	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000311151	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523027	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523027	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523027	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523027	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000523027	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000521983	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000521983	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000521983	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000521983	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
intron-5UTR	ENST00000521983	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000263713	ENST00000441788		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000263713	ENST00000313639		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000263713	ENST00000395095		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-5UTR	ENST00000443902	ENST00000441788		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000443902	ENST00000313639		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000443902	ENST00000395095		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-5UTR	ENST00000331393	ENST00000441788		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000331393	ENST00000313639		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000331393	ENST00000395095		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-5UTR	ENST00000443124	ENST00000441788		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000443124	ENST00000313639		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000443124	ENST00000395095		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-5UTR	ENST00000452780	ENST00000441788		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000452780	ENST00000313639		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5CDS-intron	ENST00000452780	ENST00000395095		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
intron-5UTR	ENST00000488691	ENST00000441788		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
intron-intron	ENST00000488691	ENST00000313639		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
intron-intron	ENST00000488691	ENST00000395095		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	EPB41L5	chr2	120799686	+	FZR1	chr19	3522954	+
5UTR-3CDS	ENST00000452339	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000452339	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000452339	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-3CDS	ENST00000430974	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000430974	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000430974	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-3CDS	ENST00000367895	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000367895	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000367895	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-3CDS	ENST00000355167	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000355167	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000355167	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-3CDS	ENST00000355286	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000355286	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000355286	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-3CDS	ENST00000531901	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000531901	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000531901	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-3CDS	ENST00000525849	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000525849	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
5UTR-intron	ENST00000525849	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
intron-3CDS	ENST00000431403	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
intron-intron	ENST00000431403	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
intron-intron	ENST00000431403	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
3UTR-3CDS	ENST00000441015	ENST00000359015		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
3UTR-intron	ENST00000441015	ENST00000355845		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
3UTR-intron	ENST00000441015	ENST00000463140		TCGA	RV	SARC	TCGA-3B-A9HL-01A	EYA4	chr6	133562887	+	MAP3K5	chr6	137026271	-
In-frame	ENST00000309428	ENST00000528896		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
In-frame	ENST00000309428	ENST00000544884		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
In-frame	ENST00000309428	ENST00000389003		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
5CDS-intron	ENST00000309428	ENST00000579924		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
intron-3CDS	ENST00000585894	ENST00000528896		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
intron-3CDS	ENST00000585894	ENST00000544884		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
intron-3CDS	ENST00000585894	ENST00000389003		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
intron-intron	ENST00000585894	ENST00000579924		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
5UTR-3CDS	ENST00000543197	ENST00000528896		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
5UTR-3CDS	ENST00000543197	ENST00000544884		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
5UTR-3CDS	ENST00000543197	ENST00000389003		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
5UTR-intron	ENST00000543197	ENST00000579924		TCGA	RV	SARC	TCGA-DX-A48N-01A	FAM134C	chr17	40761104	-	KIAA0100	chr17	26965112	-
In-frame	ENST00000416284	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
In-frame	ENST00000416284	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000416284	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000416284	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000416284	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000416284	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000416284	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000416284	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000551619	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000551619	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
In-frame	ENST00000551619	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000551619	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000551619	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000551619	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000551619	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000551619	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
In-frame	ENST00000550003	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
In-frame	ENST00000550003	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000550003	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000550003	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000550003	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000550003	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000550003	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000550003	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000551449	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000551449	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000551449	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000551449	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000551449	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000551449	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-intron	ENST00000551449	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-intron	ENST00000551449	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000549456	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000549456	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000549456	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000549456	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000549456	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000549456	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-intron	ENST00000549456	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
intron-intron	ENST00000549456	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FAM19A2	chr12	62147403	-	TMBIM4	chr12	66547228	-
In-frame	ENST00000285046	ENST00000454876		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
Frame-shit	ENST00000285046	ENST00000360861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
5CDS-intron	ENST00000285046	ENST00000416216		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
5CDS-intron	ENST00000285046	ENST00000484191		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
In-frame	ENST00000543601	ENST00000454876		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
Frame-shit	ENST00000543601	ENST00000360861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
5CDS-intron	ENST00000543601	ENST00000416216		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
5CDS-intron	ENST00000543601	ENST00000484191		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
intron-3CDS	ENST00000476851	ENST00000454876		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
intron-3CDS	ENST00000476851	ENST00000360861		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
intron-intron	ENST00000476851	ENST00000416216		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
intron-intron	ENST00000476851	ENST00000484191		TCGA	RV	SARC	TCGA-DX-A3LS-01A	FGD5	chr3	14863103	+	SLC6A6	chr3	14526375	+
In-frame	ENST00000450095	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000450095	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000450095	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000450095	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
5CDS-intron	ENST00000450095	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000556278	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000556278	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000556278	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000556278	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
intron-intron	ENST00000556278	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
5CDS-intron	ENST00000378842	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
3UTR-3CDS	ENST00000488412	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
3UTR-3CDS	ENST00000488412	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
3UTR-3CDS	ENST00000488412	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
3UTR-3CDS	ENST00000488412	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
3UTR-intron	ENST00000488412	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34649561	+	WDR72	chr15	53889471	-
In-frame	ENST00000452319	ENST00000327097		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
5CDS-5UTR	ENST00000452319	ENST00000541757		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
5UTR-3CDS	ENST00000314490	ENST00000327097		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
5UTR-5UTR	ENST00000314490	ENST00000541757		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
In-frame	ENST00000361492	ENST00000327097		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
5CDS-5UTR	ENST00000361492	ENST00000541757		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
3UTR-3CDS	ENST00000435313	ENST00000327097		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
3UTR-5UTR	ENST00000435313	ENST00000541757		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GLI2	chr2	121555044	+	MARCO	chr2	119726736	+
Frame-shit	ENST00000403668	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000403668	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000403668	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000403668	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000403668	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000444075	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000444075	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000444075	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000444075	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000444075	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000287701	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000287701	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000287701	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000287701	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000287701	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000558662	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000558662	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000558662	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000558662	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000558662	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523613	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523613	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523613	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000523613	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000523613	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000397358	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000397358	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000397358	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000397358	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000397358	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000519047	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000519047	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000519047	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000519047	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000519047	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000355231	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000355231	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000355231	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000355231	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000355231	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000524238	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000524238	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000524238	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000524238	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
5CDS-5UTR	ENST00000524238	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000517386	ENST00000306100		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000517386	ENST00000379164		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000517386	ENST00000536695		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
intron-3CDS	ENST00000517386	ENST00000427802		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
intron-5UTR	ENST00000517386	ENST00000511170		TCGA	RV	SARC	TCGA-DX-AB2O-01A	HMBOX1	chr8	28837673	+	FSTL5	chr4	162508727	-
Frame-shit	ENST00000316673	ENST00000396863		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000316673	ENST00000217026		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000609795	ENST00000396863		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000609795	ENST00000217026		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000457232	ENST00000396863		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000457232	ENST00000217026		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000443598	ENST00000396863		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000443598	ENST00000217026		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000316099	ENST00000396863		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000316099	ENST00000217026		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000415691	ENST00000396863		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000415691	ENST00000217026		TCGA	RV	SARC	TCGA-DX-A1KX-01A	HNF4A	chr20	43036115	+	MYBL2	chr20	42340128	+
Frame-shit	ENST00000341776	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
Frame-shit	ENST00000341776	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
Frame-shit	ENST00000341776	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
Frame-shit	ENST00000341776	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
Frame-shit	ENST00000341776	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000397311	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000397311	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000397311	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000397311	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000397311	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000541660	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000541660	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000541660	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000541660	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000541660	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000474854	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000474854	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000474854	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000474854	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
intron-3CDS	ENST00000474854	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	JARID2	chr6	15246815	+	DNM3	chr1	171890888	+
In-frame	ENST00000490337	ENST00000327300		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000490337	ENST00000307714		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000490337	ENST00000492989		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
In-frame	ENST00000389636	ENST00000327300		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000389636	ENST00000307714		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000389636	ENST00000492989		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
In-frame	ENST00000471742	ENST00000327300		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000471742	ENST00000307714		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000471742	ENST00000492989		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
In-frame	ENST00000302490	ENST00000327300		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000302490	ENST00000307714		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000302490	ENST00000492989		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
In-frame	ENST00000389634	ENST00000327300		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000389634	ENST00000307714		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
5CDS-3UTR	ENST00000389634	ENST00000492989		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
3UTR-3CDS	ENST00000497291	ENST00000327300		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
3UTR-3UTR	ENST00000497291	ENST00000307714		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
3UTR-3UTR	ENST00000497291	ENST00000492989		TCGA	RV	SARC	TCGA-IW-A3M6-01A	KCNAB1	chr3	156249286	+	KHDRBS1	chr1	32502511	+
In-frame	ENST00000367265	ENST00000608999		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
In-frame	ENST00000367265	ENST00000336894		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-intron	ENST00000367265	ENST00000480184		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-intron	ENST00000367265	ENST00000356764		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-3UTR	ENST00000367265	ENST00000290419		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-3UTR	ENST00000367265	ENST00000391959		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-3UTR	ENST00000367265	ENST00000367270		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
In-frame	ENST00000367264	ENST00000608999		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
In-frame	ENST00000367264	ENST00000336894		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-intron	ENST00000367264	ENST00000480184		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-intron	ENST00000367264	ENST00000356764		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-3UTR	ENST00000367264	ENST00000290419		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-3UTR	ENST00000367264	ENST00000391959		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
5CDS-3UTR	ENST00000367264	ENST00000367270		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-3CDS	ENST00000456180	ENST00000608999		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-3CDS	ENST00000456180	ENST00000336894		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-intron	ENST00000456180	ENST00000480184		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-intron	ENST00000456180	ENST00000356764		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-3UTR	ENST00000456180	ENST00000290419		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-3UTR	ENST00000456180	ENST00000391959		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
intron-3UTR	ENST00000456180	ENST00000367270		TCGA	RV	SARC	TCGA-DX-A8BV-01A	KDM5B	chr1	202742246	-	PPP1R12B	chr1	202536906	+
In-frame	ENST00000552864	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HO-01A	LIN7A	chr12	81283030	-	NUP107	chr12	69135593	+
In-frame	ENST00000552864	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HO-01A	LIN7A	chr12	81283030	-	NUP107	chr12	69135593	+
In-frame	ENST00000552864	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HO-01A	LIN7A	chr12	81283030	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000552864	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HO-01A	LIN7A	chr12	81283030	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000446828	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000446828	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000446828	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000446828	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000446828	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000446828	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5UTR-3CDS	ENST00000424227	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5UTR-3CDS	ENST00000424227	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5UTR-3CDS	ENST00000424227	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5UTR-3CDS	ENST00000424227	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5UTR-intron	ENST00000424227	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5UTR-intron	ENST00000424227	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000443863	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000443863	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000443863	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000443863	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-intron	ENST00000443863	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-intron	ENST00000443863	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000535426	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000535426	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000535426	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000535426	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-intron	ENST00000535426	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-intron	ENST00000535426	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000265026	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000265026	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000265026	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-3CDS	ENST00000265026	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-intron	ENST00000265026	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
intron-intron	ENST00000265026	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000448876	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000448876	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000448876	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000448876	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000448876	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000448876	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000454237	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000454237	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000454237	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000454237	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000454237	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000454237	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000438798	ENST00000450521		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000438798	ENST00000539949		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000438798	ENST00000382134		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000438798	ENST00000265029		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000438798	ENST00000488561		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
5CDS-intron	ENST00000438798	ENST00000382136		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	MAP3K13	chr3	185003431	+	FETUB	chr3	186369007	+
Frame-shit	ENST00000550735	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
5CDS-intron	ENST00000550735	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
Frame-shit	ENST00000551404	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
5CDS-intron	ENST00000551404	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
intron-3CDS	ENST00000547305	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
intron-intron	ENST00000547305	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
intron-3CDS	ENST00000546394	ENST00000344651		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
intron-intron	ENST00000546394	ENST00000539658		TCGA	RV	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	UNC119B	chr12	121157723	+
5CDS-intron	ENST00000262027	ENST00000355192		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000262027	ENST00000308259		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000262027	ENST00000540804		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000262027	ENST00000535664		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000262027	ENST00000538725		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000315473	ENST00000355192		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000315473	ENST00000308259		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000315473	ENST00000540804		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000315473	ENST00000535664		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
5CDS-intron	ENST00000315473	ENST00000538725		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
3UTR-intron	ENST00000447721	ENST00000355192		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
3UTR-intron	ENST00000447721	ENST00000308259		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
3UTR-intron	ENST00000447721	ENST00000540804		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
3UTR-intron	ENST00000447721	ENST00000535664		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
3UTR-intron	ENST00000447721	ENST00000538725		TCGA	RV	SARC	TCGA-DX-A1L0-01A	MARS	chr12	57898082	+	MSRB3	chr12	65881784	+
In-frame	ENST00000397601	ENST00000342922		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000402799		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000311027		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000406482		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000407859		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000349238		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000395344		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000395336		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000402192		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000397601	ENST00000405573		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
5CDS-intron	ENST00000397601	ENST00000489415		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000342922		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000402799		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000311027		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000406482		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000407859		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000349238		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000395344		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000395336		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000402192		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000343600	ENST00000405573		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
5CDS-intron	ENST00000343600	ENST00000489415		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000342922		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000402799		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000311027		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000406482		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000407859		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000349238		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000395344		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000395336		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000402192		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000345429	ENST00000405573		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
5CDS-intron	ENST00000345429	ENST00000489415		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000342922		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000402799		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000311027		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000406482		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000407859		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000349238		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000395344		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000395336		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000402192		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000376673	ENST00000405573		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
5CDS-intron	ENST00000376673	ENST00000489415		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000342922		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000402799		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000311027		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000406482		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000407859		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000349238		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000395344		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000395336		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000402192		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000445661	ENST00000405573		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
5CDS-intron	ENST00000445661	ENST00000489415		TCGA	RV	SARC	TCGA-DX-A6YS-01A	MBNL2	chr13	97928663	+	MADD	chr11	47330142	+
In-frame	ENST00000540418	ENST00000402685		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
Frame-shit	ENST00000540418	ENST00000539469		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
Frame-shit	ENST00000540418	ENST00000298919		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
Frame-shit	ENST00000303145	ENST00000402685		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
In-frame	ENST00000303145	ENST00000539469		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
Frame-shit	ENST00000303145	ENST00000298919		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000411698	ENST00000402685		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000411698	ENST00000539469		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000411698	ENST00000298919		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000393543	ENST00000402685		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000393543	ENST00000539469		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000393543	ENST00000298919		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000430606	ENST00000402685		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000430606	ENST00000539469		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000430606	ENST00000298919		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000545724	ENST00000402685		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000545724	ENST00000539469		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
intron-3CDS	ENST00000545724	ENST00000298919		TCGA	RV	SARC	TCGA-DX-A3U5-01A	MDM1	chr12	68688348	-	PDZRN4	chr12	41966166	+
5CDS-5UTR	ENST00000453228	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000453228	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000453228	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000453228	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000354410	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000354410	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000354410	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000354410	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
intron-5UTR	ENST00000558856	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
intron-5UTR	ENST00000558856	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
intron-3UTR	ENST00000558856	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
intron-3UTR	ENST00000558856	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000558812	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000558812	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000558812	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000558812	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000338042	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000338042	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000338042	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000338042	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000557785	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000557785	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000557785	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000557785	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000449277	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000449277	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000449277	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000449277	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000557942	ENST00000545111		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-5UTR	ENST00000557942	ENST00000394232		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000557942	ENST00000557291		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
5CDS-3UTR	ENST00000557942	ENST00000330276		TCGA	RV	SARC	TCGA-DX-A1KY-01A	MEF2A	chr15	100230633	+	SV2B	chr15	91795049	+
Frame-shit	ENST00000337755	ENST00000522208		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000337755	ENST00000521389		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000337755	ENST00000261947		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000337755	ENST00000520564		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
Frame-shit	ENST00000292591	ENST00000522208		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000292591	ENST00000521389		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000292591	ENST00000261947		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
5CDS-intron	ENST00000292591	ENST00000520564		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
intron-3CDS	ENST00000521305	ENST00000522208		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
intron-intron	ENST00000521305	ENST00000521389		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
intron-intron	ENST00000521305	ENST00000261947		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
intron-intron	ENST00000521305	ENST00000520564		TCGA	RV	SARC	TCGA-N1-A6IA-01A	MGAT4B	chr5	179225165	-	RNF130	chr5	179347426	-
In-frame	ENST00000263268	ENST00000572933		TCGA	RV	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7735897	+
In-frame	ENST00000263268	ENST00000389173		TCGA	RV	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7735897	+
5CDS-intron	ENST00000263268	ENST00000570791		TCGA	RV	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7735897	+
5CDS-intron	ENST00000263268	ENST00000082259		TCGA	RV	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7735897	+
In-frame	ENST00000262146	ENST00000263274		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
In-frame	ENST00000262146	ENST00000536218		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
In-frame	ENST00000262146	ENST00000427526		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
5CDS-intron	ENST00000262146	ENST00000599165		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
3UTR-3CDS	ENST00000517944	ENST00000263274		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
3UTR-3CDS	ENST00000517944	ENST00000536218		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
3UTR-3CDS	ENST00000517944	ENST00000427526		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
3UTR-intron	ENST00000517944	ENST00000599165		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
In-frame	ENST00000458689	ENST00000263274		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
In-frame	ENST00000458689	ENST00000536218		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
In-frame	ENST00000458689	ENST00000427526		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
5CDS-intron	ENST00000458689	ENST00000599165		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTFR1	chr8	66605994	+	LIG1	chr19	48647220	-
In-frame	ENST00000431530	ENST00000328666		TCGA	RV	SARC	TCGA-DX-A8BK-01A	MTUS2	chr13	30054501	+	SIRT7	chr17	79875843	-
In-frame	ENST00000380808	ENST00000328666		TCGA	RV	SARC	TCGA-DX-A8BK-01A	MTUS2	chr13	30054501	+	SIRT7	chr17	79875843	-
In-frame	ENST00000542829	ENST00000328666		TCGA	RV	SARC	TCGA-DX-A8BK-01A	MTUS2	chr13	30054501	+	SIRT7	chr17	79875843	-
intron-3CDS	ENST00000400542	ENST00000328666		TCGA	RV	SARC	TCGA-DX-A8BK-01A	MTUS2	chr13	30054501	+	SIRT7	chr17	79875843	-
5UTR-3CDS	ENST00000360416	ENST00000219022		TCGA	RV	SARC	TCGA-X6-A8C5-01A	MYH10	chr17	8533972	-	OLFM4	chr13	53608483	+
5UTR-3CDS	ENST00000379980	ENST00000219022		TCGA	RV	SARC	TCGA-X6-A8C5-01A	MYH10	chr17	8533972	-	OLFM4	chr13	53608483	+
5UTR-3CDS	ENST00000396239	ENST00000219022		TCGA	RV	SARC	TCGA-X6-A8C5-01A	MYH10	chr17	8533972	-	OLFM4	chr13	53608483	+
5UTR-3CDS	ENST00000269243	ENST00000219022		TCGA	RV	SARC	TCGA-X6-A8C5-01A	MYH10	chr17	8533972	-	OLFM4	chr13	53608483	+
Frame-shit	ENST00000360772	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000360772	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000360772	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
5CDS-5UTR	ENST00000360772	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000359169	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000359169	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000359169	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
5CDS-5UTR	ENST00000359169	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000360304	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000360304	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000360304	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
5CDS-5UTR	ENST00000360304	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000418370	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000418370	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000418370	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-5UTR	ENST00000418370	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000578202	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000578202	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000578202	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-5UTR	ENST00000578202	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000354792	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000354792	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000354792	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-5UTR	ENST00000354792	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000346322	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000346322	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000346322	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
5CDS-5UTR	ENST00000346322	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000583087	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000583087	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000583087	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-5UTR	ENST00000583087	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000475616	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000475616	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000475616	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
5CDS-5UTR	ENST00000475616	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000510775	ENST00000236192		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000510775	ENST00000415773		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-3CDS	ENST00000510775	ENST00000367740		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
intron-5UTR	ENST00000510775	ENST00000482519		TCGA	RV	SARC	TCGA-DX-A6BG-01A	MYLK	chr3	123512524	-	VAMP4	chr1	171679954	-
Frame-shit	ENST00000354393	ENST00000377242		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000354393	ENST00000377252		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
5CDS-3UTR	ENST00000354393	ENST00000377238		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000540630	ENST00000377242		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000540630	ENST00000377252		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
5CDS-3UTR	ENST00000540630	ENST00000377238		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000358913	ENST00000377242		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000358913	ENST00000377252		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
5CDS-3UTR	ENST00000358913	ENST00000377238		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000373675	ENST00000377242		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
Frame-shit	ENST00000373675	ENST00000377252		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
5CDS-3UTR	ENST00000373675	ENST00000377238		TCGA	RV	SARC	TCGA-FX-A76Y-01A	MYPN	chr10	69918384	+	PLXDC2	chr10	20453397	+
In-frame	ENST00000540320	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000540320	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000540320	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000400445	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000400445	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000400445	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000310336	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000310336	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000310336	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000379939	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000379939	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
In-frame	ENST00000379939	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000537702	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000537702	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000537702	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000379922	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000379922	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000379922	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000461581	ENST00000492622		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000461581	ENST00000541916		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
intron-3CDS	ENST00000461581	ENST00000398316		TCGA	RV	SARC	TCGA-HS-A5NA-01A	NBEA	chr13	35806756	+	FNDC3A	chr13	49688791	+
5CDS-5UTR	ENST00000405201	ENST00000552283		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000405201	ENST00000251074		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000405201	ENST00000543021		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000404621	ENST00000552283		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000404621	ENST00000251074		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000404621	ENST00000543021		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000404121	ENST00000552283		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000404121	ENST00000251074		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000404121	ENST00000543021		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000356219	ENST00000552283		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000356219	ENST00000251074		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000356219	ENST00000543021		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000397355	ENST00000552283		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000397355	ENST00000251074		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000397355	ENST00000543021		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000429285	ENST00000552283		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000429285	ENST00000251074		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
5CDS-5UTR	ENST00000429285	ENST00000543021		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOR2	chr12	124904503	-	NUP37	chr12	102512361	-
In-frame	ENST00000266742	ENST00000321196		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000266742	ENST00000548305		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000266742	ENST00000549919		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000429527	ENST00000321196		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000429527	ENST00000548305		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000429527	ENST00000549919		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
3UTR-3CDS	ENST00000555114	ENST00000321196		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
3UTR-3CDS	ENST00000555114	ENST00000548305		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
3UTR-3CDS	ENST00000555114	ENST00000549919		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000411739	ENST00000321196		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000411739	ENST00000548305		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000411739	ENST00000549919		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000557644	ENST00000321196		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000557644	ENST00000548305		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000557644	ENST00000549919		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000457368	ENST00000321196		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000457368	ENST00000548305		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
In-frame	ENST00000457368	ENST00000549919		TCGA	RV	SARC	TCGA-3B-A9HS-01A	NEDD1	chr12	97313903	+	TMTC2	chr12	83289597	+
5CDS-5UTR	ENST00000395487	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000395487	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000429094	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000429094	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000551601	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000551601	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000452445	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000452445	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000549027	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000549027	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000333837	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000333837	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000437801	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-5UTR	ENST00000437801	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
intron-5UTR	ENST00000547172	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
intron-5UTR	ENST00000547172	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
intron-5UTR	ENST00000548826	ENST00000486149		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
intron-5UTR	ENST00000548826	ENST00000376296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NELL2	chr12	45059267	-	MUC21	chr6	30954014	+
5CDS-intron	ENST00000263388	ENST00000592864		TCGA	RV	SARC	TCGA-FX-A3NK-01A	NOTCH3	chr19	15308311	-	CACNA1A	chr19	13482593	-
5CDS-intron	ENST00000263388	ENST00000360228		TCGA	RV	SARC	TCGA-FX-A3NK-01A	NOTCH3	chr19	15308311	-	CACNA1A	chr19	13482593	-
5CDS-intron	ENST00000263388	ENST00000573710		TCGA	RV	SARC	TCGA-FX-A3NK-01A	NOTCH3	chr19	15308311	-	CACNA1A	chr19	13482593	-
5CDS-intron	ENST00000263388	ENST00000574822		TCGA	RV	SARC	TCGA-FX-A3NK-01A	NOTCH3	chr19	15308311	-	CACNA1A	chr19	13482593	-
In-frame	ENST00000343702	ENST00000550929		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
In-frame	ENST00000343702	ENST00000262055		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000343702	ENST00000380123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000343702	ENST00000418425		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000343702	ENST00000547008		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000343702	ENST00000552739		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000343702	ENST00000548516		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
In-frame	ENST00000344911	ENST00000550929		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
In-frame	ENST00000344911	ENST00000262055		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000344911	ENST00000380123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000344911	ENST00000418425		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000344911	ENST00000547008		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000344911	ENST00000552739		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000344911	ENST00000548516		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
Frame-shit	ENST00000538383	ENST00000550929		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
Frame-shit	ENST00000538383	ENST00000262055		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000538383	ENST00000380123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000538383	ENST00000418425		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000538383	ENST00000547008		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000538383	ENST00000552739		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000538383	ENST00000548516		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
In-frame	ENST00000553059	ENST00000550929		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
In-frame	ENST00000553059	ENST00000262055		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000553059	ENST00000380123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000553059	ENST00000418425		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000553059	ENST00000547008		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000553059	ENST00000552739		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
5CDS-3UTR	ENST00000553059	ENST00000548516		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000552603	ENST00000550929		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3CDS	ENST00000552603	ENST00000262055		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000552603	ENST00000380123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000552603	ENST00000418425		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000552603	ENST00000547008		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000552603	ENST00000552739		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
intron-3UTR	ENST00000552603	ENST00000548516		TCGA	RV	SARC	TCGA-DX-AB2G-01A	NTN4	chr12	96180717	-	LETMD1	chr12	51450133	+
In-frame	ENST00000392302	ENST00000375735		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000392302	ENST00000334267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000392302	ENST00000398093		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000368196	ENST00000375735		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000368196	ENST00000334267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000368196	ENST00000398093		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000524377	ENST00000375735		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000524377	ENST00000334267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000524377	ENST00000398093		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000358660	ENST00000375735		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000358660	ENST00000334267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000358660	ENST00000398093		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
3UTR-3CDS	ENST00000531606	ENST00000375735		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
3UTR-3CDS	ENST00000531606	ENST00000334267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
3UTR-3CDS	ENST00000531606	ENST00000398093		TCGA	RV	SARC	TCGA-DX-A3LY-01B	NTRK1	chr1	156849949	+	DYNC2H1	chr11	103306671	+
In-frame	ENST00000261402	ENST00000279907		TCGA	RV	SARC	TCGA-DX-A48N-01A	NUAK1	chr12	106500183	-	UHRF1BP1L	chr12	100433567	-
5CDS-intron	ENST00000261402	ENST00000356828		TCGA	RV	SARC	TCGA-DX-A48N-01A	NUAK1	chr12	106500183	-	UHRF1BP1L	chr12	100433567	-
5CDS-intron	ENST00000261402	ENST00000545232		TCGA	RV	SARC	TCGA-DX-A48N-01A	NUAK1	chr12	106500183	-	UHRF1BP1L	chr12	100433567	-
In-frame	ENST00000380958	ENST00000241453		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
In-frame	ENST00000380958	ENST00000380982		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
In-frame	ENST00000380958	ENST00000537084		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
5CDS-intron	ENST00000380958	ENST00000469894		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
5UTR-3CDS	ENST00000399613	ENST00000241453		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
5UTR-3CDS	ENST00000399613	ENST00000380982		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
5UTR-3CDS	ENST00000399613	ENST00000537084		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
5UTR-intron	ENST00000399613	ENST00000469894		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000241453		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000380982		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000282391	ENST00000537084		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-intron	ENST00000282391	ENST00000469894		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000241453		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000380982		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000483842	ENST00000537084		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-intron	ENST00000483842	ENST00000469894		TCGA	RV	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28644749	-
intron-3CDS	ENST00000398081	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PDXK	chr21	45163688	+	LIN7A	chr12	81283148	-
intron-3CDS	ENST00000468090	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PDXK	chr21	45163688	+	LIN7A	chr12	81283148	-
Frame-shit	ENST00000291565	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PDXK	chr21	45163688	+	LIN7A	chr12	81283148	-
intron-3CDS	ENST00000327574	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PDXK	chr21	45163688	+	LIN7A	chr12	81283148	-
intron-3CDS	ENST00000476313	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PDXK	chr21	45163688	+	LIN7A	chr12	81283148	-
Frame-shit	ENST00000467908	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PDXK	chr21	45163688	+	LIN7A	chr12	81283148	-
In-frame	ENST00000367591	ENST00000360388		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PEX3	chr6	143795993	+	SLC35F1	chr6	118635191	+
intron-3CDS	ENST00000369299	ENST00000268893		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
intron-3CDS	ENST00000369299	ENST00000355701		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
intron-3CDS	ENST00000369299	ENST00000343736		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
In-frame	ENST00000393045	ENST00000268893		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
In-frame	ENST00000393045	ENST00000355701		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
In-frame	ENST00000393045	ENST00000343736		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
In-frame	ENST00000369298	ENST00000268893		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
In-frame	ENST00000369298	ENST00000355701		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
In-frame	ENST00000369298	ENST00000343736		TCGA	RV	SARC	TCGA-DX-AB3A-01A	PIAS3	chr1	145584836	+	BZRAP1	chr17	56384329	-
Frame-shit	ENST00000377242	ENST00000369797		TCGA	RV	SARC	TCGA-FX-A76Y-01A	PLXDC2	chr10	20466338	+	PDCD11	chr10	105182745	+
5CDS-intron	ENST00000377242	ENST00000490787		TCGA	RV	SARC	TCGA-FX-A76Y-01A	PLXDC2	chr10	20466338	+	PDCD11	chr10	105182745	+
Frame-shit	ENST00000377252	ENST00000369797		TCGA	RV	SARC	TCGA-FX-A76Y-01A	PLXDC2	chr10	20466338	+	PDCD11	chr10	105182745	+
5CDS-intron	ENST00000377252	ENST00000490787		TCGA	RV	SARC	TCGA-FX-A76Y-01A	PLXDC2	chr10	20466338	+	PDCD11	chr10	105182745	+
3UTR-3CDS	ENST00000377238	ENST00000369797		TCGA	RV	SARC	TCGA-FX-A76Y-01A	PLXDC2	chr10	20466338	+	PDCD11	chr10	105182745	+
3UTR-intron	ENST00000377238	ENST00000490787		TCGA	RV	SARC	TCGA-FX-A76Y-01A	PLXDC2	chr10	20466338	+	PDCD11	chr10	105182745	+
5CDS-3UTR	ENST00000444397	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000444397	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000444397	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000444397	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000360694	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000360694	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000360694	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000360694	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000418635	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000418635	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000418635	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000418635	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000448077	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000448077	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000448077	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000448077	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000337400	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000337400	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000337400	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000337400	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000311565	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000311565	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000311565	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-3UTR	ENST00000311565	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000540939	ENST00000487175		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000540939	ENST00000372585		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000540939	ENST00000372589		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
intron-3UTR	ENST00000540939	ENST00000372574		TCGA	RV	SARC	TCGA-X6-A7WB-01A	PPARD	chr6	35378994	+	SLC22A7	chr6	43267636	+
5CDS-intron	ENST00000379066	ENST00000428417		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000379066	ENST00000376014		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000379066	ENST00000400796		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000379066	ENST00000434578		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000379066	ENST00000376008		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000234179	ENST00000428417		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000234179	ENST00000376014		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-intron	ENST00000234179	ENST00000400796		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000234179	ENST00000434578		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
5CDS-5UTR	ENST00000234179	ENST00000376008		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
intron-intron	ENST00000477132	ENST00000428417		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
intron-5UTR	ENST00000477132	ENST00000376014		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
intron-intron	ENST00000477132	ENST00000400796		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
intron-5UTR	ENST00000477132	ENST00000434578		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
intron-5UTR	ENST00000477132	ENST00000376008		TCGA	RV	SARC	TCGA-K1-A3PO-01A	PRKD3	chr2	37520276	-	TMEM51	chr1	15536986	+
In-frame	ENST00000306726	ENST00000380993		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
In-frame	ENST00000306726	ENST00000396577		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
5CDS-intron	ENST00000306726	ENST00000330289		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
5CDS-intron	ENST00000306726	ENST00000558405		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
5CDS-intron	ENST00000306726	ENST00000561031		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
5CDS-intron	ENST00000306726	ENST00000559723		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-3CDS	ENST00000564970	ENST00000380993		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-3CDS	ENST00000564970	ENST00000396577		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-intron	ENST00000564970	ENST00000330289		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-intron	ENST00000564970	ENST00000558405		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-intron	ENST00000564970	ENST00000561031		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-intron	ENST00000564970	ENST00000559723		TCGA	RV	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48539534	+
intron-3CDS	ENST00000345843	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000345843	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000345843	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-5UTR	ENST00000345843	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000342295	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000342295	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000342295	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-5UTR	ENST00000342295	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000361572	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000361572	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000361572	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-5UTR	ENST00000361572	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
In-frame	ENST00000348160	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
In-frame	ENST00000348160	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
In-frame	ENST00000348160	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
5CDS-5UTR	ENST00000348160	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
5UTR-3CDS	ENST00000355476	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
5UTR-3CDS	ENST00000355476	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
5UTR-3CDS	ENST00000355476	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
5UTR-5UTR	ENST00000355476	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
3UTR-3CDS	ENST00000511401	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
3UTR-3CDS	ENST00000511401	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
3UTR-3CDS	ENST00000511401	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
3UTR-5UTR	ENST00000511401	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000507561	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000507561	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000507561	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-5UTR	ENST00000507561	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000504907	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000504907	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000504907	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-5UTR	ENST00000504907	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000342320	ENST00000399878		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000342320	ENST00000264868		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-3CDS	ENST00000342320	ENST00000502949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
intron-5UTR	ENST00000342320	ENST00000513364		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RBPJ	chr4	26322670	+	SEL1L3	chr4	25835191	-
In-frame	ENST00000350028	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
In-frame	ENST00000350028	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
In-frame	ENST00000350028	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
In-frame	ENST00000350028	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
3UTR-3CDS	ENST00000493161	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
3UTR-3CDS	ENST00000493161	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
3UTR-3CDS	ENST00000493161	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
3UTR-3CDS	ENST00000493161	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000396202	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000396202	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000396202	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000396202	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB2F-01A	SAMM50	chr22	44360433	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000313050	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000313050	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000313050	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-3CDS	ENST00000467838	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-3UTR	ENST00000467838	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-intron	ENST00000467838	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
Frame-shit	ENST00000371706	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000371706	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000371706	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-3CDS	ENST00000313084	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-3UTR	ENST00000313084	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-intron	ENST00000313084	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
Frame-shit	ENST00000290037	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000290037	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000290037	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
Frame-shit	ENST00000431893	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000431893	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000431893	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-3CDS	ENST00000398335	ENST00000481739		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-3UTR	ENST00000398335	ENST00000356384		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
intron-intron	ENST00000398335	ENST00000540193		TCGA	RV	SARC	TCGA-DX-A3LS-01A	SEC16A	chr9	139353586	-	RXRA	chr9	137293478	+
5UTR-3CDS	ENST00000428443	ENST00000350375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	POU1F1	chr3	87313662	-
5UTR-3CDS	ENST00000428443	ENST00000344265		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	POU1F1	chr3	87313662	-
5UTR-3CDS	ENST00000428443	ENST00000560656		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	POU1F1	chr3	87313662	-
intron-3CDS	ENST00000486468	ENST00000350375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	POU1F1	chr3	87313662	-
intron-3CDS	ENST00000486468	ENST00000344265		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	POU1F1	chr3	87313662	-
intron-3CDS	ENST00000486468	ENST00000560656		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	POU1F1	chr3	87313662	-
Frame-shit	ENST00000253122	ENST00000369110		TCGA	RV	SARC	TCGA-DX-A1KX-01A	SLC6A8	chrX	152954291	+	PREP	chr6	105845802	-
intron-3CDS	ENST00000430077	ENST00000369110		TCGA	RV	SARC	TCGA-DX-A1KX-01A	SLC6A8	chrX	152954291	+	PREP	chr6	105845802	-
intron-3CDS	ENST00000485324	ENST00000369110		TCGA	RV	SARC	TCGA-DX-A1KX-01A	SLC6A8	chrX	152954291	+	PREP	chr6	105845802	-
intron-3CDS	ENST00000546097	ENST00000248484		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000546097	ENST00000382263		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000546097	ENST00000403372		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000546097	ENST00000464735		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000546097	ENST00000382258		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000367481	ENST00000248484		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000367481	ENST00000382263		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000367481	ENST00000403372		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000367481	ENST00000464735		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000367481	ENST00000382258		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000367480	ENST00000248484		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000367480	ENST00000382263		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000367480	ENST00000403372		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000367480	ENST00000464735		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000367480	ENST00000382258		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
Frame-shit	ENST00000321680	ENST00000248484		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
Frame-shit	ENST00000321680	ENST00000382263		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
In-frame	ENST00000321680	ENST00000403372		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
5CDS-intron	ENST00000321680	ENST00000464735		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
5CDS-intron	ENST00000321680	ENST00000382258		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000179882	ENST00000248484		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000179882	ENST00000382263		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-3CDS	ENST00000179882	ENST00000403372		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000179882	ENST00000464735		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
intron-intron	ENST00000179882	ENST00000382258		TCGA	RV	SARC	TCGA-PC-A5DM-01A	STXBP5	chr6	147660520	+	TNFRSF19	chr13	24247511	+
Frame-shit	ENST00000341460	ENST00000550703		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
Frame-shit	ENST00000341460	ENST00000551590		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
Frame-shit	ENST00000341460	ENST00000397655		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
Frame-shit	ENST00000341460	ENST00000471804		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
5CDS-5UTR	ENST00000341460	ENST00000377654		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
5CDS-5UTR	ENST00000341460	ENST00000397659		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
5CDS-5UTR	ENST00000341460	ENST00000551555		TCGA	RV	SARC	TCGA-DX-A23V-01A	SYDE2	chr1	85665935	-	TCTN1	chr12	111057641	+
Frame-shit	ENST00000424789	ENST00000595646		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
5CDS-5UTR	ENST00000424789	ENST00000396409		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
5CDS-5UTR	ENST00000424789	ENST00000390651		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
5CDS-5UTR	ENST00000424789	ENST00000243639		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
Frame-shit	ENST00000389520	ENST00000595646		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
5CDS-5UTR	ENST00000389520	ENST00000396409		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
5CDS-5UTR	ENST00000389520	ENST00000390651		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
5CDS-5UTR	ENST00000389520	ENST00000243639		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61278318	+	ZNF468	chr19	53352466	-
intron-3CDS	ENST00000259075	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000259075	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000259075	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000259075	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000259075	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000259075	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-5UTR	ENST00000259075	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000457476	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000457476	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000457476	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000457476	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000457476	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000457476	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-5UTR	ENST00000457476	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000392749	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000392749	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000392749	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000392749	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000392749	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000392749	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-5UTR	ENST00000392749	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-3CDS	ENST00000461338	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-3CDS	ENST00000461338	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-3CDS	ENST00000461338	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-3CDS	ENST00000461338	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-3CDS	ENST00000461338	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-3CDS	ENST00000461338	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
3UTR-5UTR	ENST00000461338	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000402568	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000402568	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000402568	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000402568	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000402568	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000402568	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-5UTR	ENST00000402568	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000406287	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000406287	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000406287	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000406287	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000406287	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000406287	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-5UTR	ENST00000406287	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000405852	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000405852	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000405852	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000405852	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000405852	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000405852	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-5UTR	ENST00000405852	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000403609	ENST00000539935		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000403609	ENST00000360283		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000403609	ENST00000534999		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000403609	ENST00000397327		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000403609	ENST00000427385		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-3CDS	ENST00000403609	ENST00000201943		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
intron-5UTR	ENST00000403609	ENST00000475848		TCGA	RV	SARC	TCGA-X6-A8C2-01A	TANK	chr2	162016997	+	CACNB4	chr2	152739884	-
5UTR-3CDS	ENST00000358409	ENST00000267079		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000358409	ENST00000547488		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000358409	ENST00000547035		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-5UTR	ENST00000358409	ENST00000547151		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000359864	ENST00000267079		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000359864	ENST00000547488		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000359864	ENST00000547035		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-5UTR	ENST00000359864	ENST00000547151		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000397122	ENST00000267079		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000397122	ENST00000547488		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000397122	ENST00000547035		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-5UTR	ENST00000397122	ENST00000547151		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TEAD4	chr12	3069206	+	MAP3K12	chr12	53880929	-
5UTR-3CDS	ENST00000354618	ENST00000371191		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3CDS	ENST00000354618	ENST00000407417		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000479364		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000371189		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000403491		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000371187		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000485903		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000371185		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000371184		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000354618	ENST00000357977		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3CDS	ENST00000469141	ENST00000371191		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3CDS	ENST00000469141	ENST00000407417		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000479364		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000371189		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000403491		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000371187		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000485903		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000371185		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000371184		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
5UTR-3UTR	ENST00000469141	ENST00000357977		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3CDS	ENST00000466743	ENST00000371191		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3CDS	ENST00000466743	ENST00000407417		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000479364		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000371189		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000403491		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000371187		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000485903		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000371185		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000371184		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
intron-3UTR	ENST00000466743	ENST00000357977		TCGA	RV	SARC	TCGA-K1-A3PO-01A	THRAP3	chr1	36725085	+	NFIA	chr1	61869776	+
In-frame	ENST00000283645	ENST00000257177		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
In-frame	ENST00000283645	ENST00000371544		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
5CDS-intron	ENST00000283645	ENST00000371541		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
5CDS-intron	ENST00000283645	ENST00000355809		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
In-frame	ENST00000453949	ENST00000257177		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
In-frame	ENST00000453949	ENST00000371544		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
5CDS-intron	ENST00000453949	ENST00000371541		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
5CDS-intron	ENST00000453949	ENST00000355809		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
intron-3CDS	ENST00000559846	ENST00000257177		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
intron-3CDS	ENST00000559846	ENST00000371544		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
intron-intron	ENST00000559846	ENST00000371541		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
intron-intron	ENST00000559846	ENST00000355809		TCGA	RV	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	+	ZCCHC11	chr1	52902635	-
Frame-shit	ENST00000400521	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000400521	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000400521	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000400521	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
In-frame	ENST00000400519	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
In-frame	ENST00000400519	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000400519	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000400519	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
In-frame	ENST00000535882	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
In-frame	ENST00000535882	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000535882	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000535882	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
In-frame	ENST00000334363	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
In-frame	ENST00000334363	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000334363	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000334363	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000400518	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000400518	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000400518	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000400518	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000542719	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000542719	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000542719	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000542719	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5UTR-3CDS	ENST00000491939	ENST00000496902		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5UTR-3CDS	ENST00000491939	ENST00000222761		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5UTR-5UTR	ENST00000491939	ENST00000535619		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
5UTR-intron	ENST00000491939	ENST00000518886		TCGA	RV	SARC	TCGA-HB-A3YV-01A	TXNRD2	chr22	19918553	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000376395	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000376395	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000376395	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000376395	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
5CDS-intron	ENST00000376395	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
5CDS-intron	ENST00000376395	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000257468	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000257468	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000257468	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
Frame-shit	ENST00000257468	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
5CDS-intron	ENST00000257468	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
5CDS-intron	ENST00000257468	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A48N-01A	UBQLN1	chr9	86322415	-	NAV3	chr12	78392117	+
In-frame	ENST00000367879	ENST00000420696		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000367879	ENST00000401534		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000367879	ENST00000559240		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000367879	ENST00000367897		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000367879	ENST00000540236		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000367879	ENST00000560641		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000367879	ENST00000474046		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000367879	ENST00000485769		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000367879	ENST00000540246		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000372212	ENST00000420696		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000372212	ENST00000401534		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000372212	ENST00000559240		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000372212	ENST00000367897		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000372212	ENST00000540236		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000372212	ENST00000560641		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000372212	ENST00000474046		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000372212	ENST00000485769		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000372212	ENST00000540246		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000462329	ENST00000420696		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000462329	ENST00000401534		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000462329	ENST00000559240		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000462329	ENST00000367897		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000462329	ENST00000540236		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000462329	ENST00000560641		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000462329	ENST00000474046		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000462329	ENST00000485769		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000462329	ENST00000540246		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000469256	ENST00000420696		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000469256	ENST00000401534		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000469256	ENST00000559240		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000469256	ENST00000367897		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000469256	ENST00000540236		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000469256	ENST00000560641		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000469256	ENST00000474046		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000469256	ENST00000485769		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000469256	ENST00000540246		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000470820	ENST00000420696		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000470820	ENST00000401534		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000470820	ENST00000559240		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000470820	ENST00000367897		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000470820	ENST00000540236		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000470820	ENST00000560641		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000470820	ENST00000474046		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000470820	ENST00000485769		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
intron-intron	ENST00000470820	ENST00000540246		TCGA	RV	SARC	TCGA-X6-A8C6-01A	UCK2	chr1	165860559	+	PBX1	chr1	164532475	+
In-frame	ENST00000282344	ENST00000395065		TCGA	RV	SARC	TCGA-DX-A3LY-01B	USP12	chr13	27664020	-	NXF3	chrX	102339423	-
5CDS-5UTR	ENST00000282344	ENST00000425644		TCGA	RV	SARC	TCGA-DX-A3LY-01B	USP12	chr13	27664020	-	NXF3	chrX	102339423	-
5CDS-5UTR	ENST00000282344	ENST00000425463		TCGA	RV	SARC	TCGA-DX-A3LY-01B	USP12	chr13	27664020	-	NXF3	chrX	102339423	-
Frame-shit	ENST00000437048	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000437048	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000437048	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5CDS-3UTR	ENST00000437048	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000574029	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000574029	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000574029	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3UTR	ENST00000574029	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000576149	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000576149	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000576149	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3UTR	ENST00000576149	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5UTR-3CDS	ENST00000446250	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5UTR-3CDS	ENST00000446250	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5UTR-3CDS	ENST00000446250	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5UTR-3UTR	ENST00000446250	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000291074	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000291074	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000291074	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5CDS-3UTR	ENST00000291074	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000571805	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000571805	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
Frame-shit	ENST00000571805	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5CDS-3UTR	ENST00000571805	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000401468	ENST00000250101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000401468	ENST00000570330		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3CDS	ENST00000401468	ENST00000574838		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
intron-3UTR	ENST00000401468	ENST00000577146		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS53	chr17	559078	-	TXNDC17	chr17	6545073	+
5CDS-intron	ENST00000446113	ENST00000549405		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000446113	ENST00000393205		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-5UTR	ENST00000446113	ENST00000332156		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-5UTR	ENST00000446113	ENST00000604798		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000446113	ENST00000552808		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000446113	ENST00000548651		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000446113	ENST00000552435		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000446113	ENST00000602941		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000399351	ENST00000549405		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000399351	ENST00000393205		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-5UTR	ENST00000399351	ENST00000332156		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-5UTR	ENST00000399351	ENST00000604798		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000399351	ENST00000552808		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000399351	ENST00000548651		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000399351	ENST00000552435		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
5CDS-intron	ENST00000399351	ENST00000602941		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-intron	ENST00000532812	ENST00000549405		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-intron	ENST00000532812	ENST00000393205		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-5UTR	ENST00000532812	ENST00000332156		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-5UTR	ENST00000532812	ENST00000604798		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-intron	ENST00000532812	ENST00000552808		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-intron	ENST00000532812	ENST00000548651		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-intron	ENST00000532812	ENST00000552435		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
3UTR-intron	ENST00000532812	ENST00000602941		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86405680	-
Frame-shit	ENST00000414563	ENST00000350026		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000414563	ENST00000346085		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000414563	ENST00000367148		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000414563	ENST00000275248		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
5CDS-intron	ENST00000414563	ENST00000478761		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000359775	ENST00000350026		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000359775	ENST00000346085		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000359775	ENST00000367148		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
Frame-shit	ENST00000359775	ENST00000275248		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
5CDS-intron	ENST00000359775	ENST00000478761		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
intron-3CDS	ENST00000341375	ENST00000350026		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
intron-3CDS	ENST00000341375	ENST00000346085		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
intron-3CDS	ENST00000341375	ENST00000367148		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
intron-3CDS	ENST00000341375	ENST00000275248		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
intron-intron	ENST00000341375	ENST00000478761		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZDHHC14	chr6	157803298	+	ARID1B	chr6	157431606	+
5CDS-5UTR	ENST00000359019	ENST00000393240		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000359019	ENST00000261205		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000359019	ENST00000457153		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-intron	ENST00000359019	ENST00000552744		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-3UTR	ENST00000359019	ENST00000549454		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000334822	ENST00000393240		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000334822	ENST00000261205		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000334822	ENST00000457153		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-intron	ENST00000334822	ENST00000552744		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-3UTR	ENST00000334822	ENST00000549454		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000426126	ENST00000393240		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000426126	ENST00000261205		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000426126	ENST00000457153		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-intron	ENST00000426126	ENST00000552744		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
5CDS-3UTR	ENST00000426126	ENST00000549454		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
intron-5UTR	ENST00000550789	ENST00000393240		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
intron-5UTR	ENST00000550789	ENST00000261205		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
intron-5UTR	ENST00000550789	ENST00000457153		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
intron-intron	ENST00000550789	ENST00000552744		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
intron-3UTR	ENST00000550789	ENST00000549454		TCGA	RV	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79371579	+
In-frame	ENST00000369577	ENST00000366919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000369577	ENST00000392142		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000369577	ENST00000348824		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000369577	ENST00000366920		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
5CDS-intron	ENST00000369577	ENST00000446500		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000339907	ENST00000366919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000339907	ENST00000392142		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000339907	ENST00000348824		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000339907	ENST00000366920		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
5CDS-intron	ENST00000339907	ENST00000446500		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000392985	ENST00000366919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000392985	ENST00000392142		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000392985	ENST00000348824		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
In-frame	ENST00000392985	ENST00000366920		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
5CDS-intron	ENST00000392985	ENST00000446500		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
3UTR-3CDS	ENST00000369578	ENST00000366919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
3UTR-3CDS	ENST00000369578	ENST00000392142		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
3UTR-3CDS	ENST00000369578	ENST00000348824		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
3UTR-3CDS	ENST00000369578	ENST00000366920		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
3UTR-intron	ENST00000369578	ENST00000446500		TCGA	RV	SARC	TCGA-DX-A3M1-01A	ZNF292	chr6	87865477	+	MAP3K4	chr6	161491640	+
Frame-shit	ENST00000317447	ENST00000358151		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000317447	ENST00000355824		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000317447	ENST00000309235		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000317447	ENST00000374374		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
Frame-shit	ENST00000406948	ENST00000358151		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000406948	ENST00000355824		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000406948	ENST00000309235		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000406948	ENST00000374374		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
Frame-shit	ENST00000378345	ENST00000358151		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000378345	ENST00000355824		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000378345	ENST00000309235		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000378345	ENST00000374374		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
3UTR-3CDS	ENST00000537116	ENST00000358151		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
3UTR-intron	ENST00000537116	ENST00000355824		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
3UTR-intron	ENST00000537116	ENST00000309235		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
3UTR-intron	ENST00000537116	ENST00000374374		TCGA	RV	SARC	TCGA-DX-AATS-01A	ACSF3	chr16	89212457	+	ZNF483	chr9	114338645	+
5CDS-5UTR	ENST00000541908	ENST00000354662		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000441439		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000447609		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000320122		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000261169		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000540848		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000535535		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000537304		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000541295		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000534946		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000540445		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000541846		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000541908	ENST00000537568		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000354662		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000441439		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000447609		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000320122		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000261169		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000540848		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000535535		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000537304		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000541295		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000534946		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000540445		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000541846		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000398864	ENST00000537568		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000354662		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000441439		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000447609		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000320122		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000261169		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000540848		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000535535		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000537304		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000541295		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000534946		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000540445		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000541846		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000266508	ENST00000537568		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000354662		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000441439		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000447609		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000320122		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000261169		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000540848		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000535535		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000537304		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000541295		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000534946		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000540445		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000541846		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
5CDS-5UTR	ENST00000360995	ENST00000537568		TCGA	RV	SARC	TCGA-JV-A5VE-01A	AEBP2	chr12	19646920	+	LMO3	chr12	16753802	-
In-frame	ENST00000416293	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ALDH2	chr12	112204900	+	LIN7A	chr12	81242101	-
In-frame	ENST00000261733	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ALDH2	chr12	112204900	+	LIN7A	chr12	81242101	-
Frame-shit	ENST00000283558	ENST00000356501		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000283558	ENST00000375418		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000375630	ENST00000356501		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000375630	ENST00000375418		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000487903	ENST00000356501		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000487903	ENST00000375418		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000375645	ENST00000356501		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
Frame-shit	ENST00000375645	ENST00000375418		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
intron-3CDS	ENST00000419448	ENST00000356501		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
intron-3CDS	ENST00000419448	ENST00000375418		TCGA	RV	SARC	TCGA-KF-A41W-01A	ATP11A	chr13	113439571	+	ADPRHL1	chr13	114088182	-
In-frame	ENST00000426216	ENST00000373344		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000426216	ENST00000395603		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-5UTR	ENST00000426216	ENST00000480283		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-intron	ENST00000426216	ENST00000373341		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000307671	ENST00000373344		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000307671	ENST00000395603		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-5UTR	ENST00000307671	ENST00000480283		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-intron	ENST00000307671	ENST00000373341		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000586722	ENST00000373344		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000586722	ENST00000395603		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-5UTR	ENST00000586722	ENST00000480283		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-intron	ENST00000586722	ENST00000373341		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
3UTR-3CDS	ENST00000591464	ENST00000373344		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
3UTR-3CDS	ENST00000591464	ENST00000395603		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
3UTR-5UTR	ENST00000591464	ENST00000480283		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
3UTR-intron	ENST00000591464	ENST00000373341		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000458297	ENST00000373344		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
In-frame	ENST00000458297	ENST00000395603		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-5UTR	ENST00000458297	ENST00000480283		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
5CDS-intron	ENST00000458297	ENST00000373341		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
intron-3CDS	ENST00000543761	ENST00000373344		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
intron-3CDS	ENST00000543761	ENST00000395603		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
intron-5UTR	ENST00000543761	ENST00000480283		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
intron-intron	ENST00000543761	ENST00000373341		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76856649	+	ATRX	chrX	76909690	-
intron-5UTR	ENST00000277198	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-5UTR	ENST00000277198	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000277198	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000277198	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000277198	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000297979	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000297979	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000297979	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000297979	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000297979	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000375315	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000375315	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000375315	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000375315	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000375315	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-5UTR	ENST00000395357	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-5UTR	ENST00000395357	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000395357	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000395357	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000395357	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000425634	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000425634	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000425634	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000425634	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000425634	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000433691	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000433691	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000433691	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000433691	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-intron	ENST00000433691	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-5UTR	ENST00000473778	ENST00000457913		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-5UTR	ENST00000473778	ENST00000277225		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000473778	ENST00000441147		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000473778	ENST00000542028		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
intron-intron	ENST00000473778	ENST00000497489		TCGA	RV	SARC	TCGA-3B-A9HV-01A	C9orf3	chr9	97823092	+	ZNF462	chr9	109685635	+
5CDS-5UTR	ENST00000335762	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000335762	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000335762	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000335762	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000335762	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399655	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399655	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399655	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399655	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399655	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000480911	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000480911	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000480911	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000480911	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000480911	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399644	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399644	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399644	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399644	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399644	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000344100	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000344100	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000344100	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000344100	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000344100	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399638	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399638	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399638	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399638	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399638	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399629	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399629	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399629	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399629	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399629	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399597	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399597	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399597	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399597	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399597	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000327702	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000327702	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000327702	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000327702	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000327702	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399621	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399621	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399621	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399621	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399621	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399649	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399649	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399649	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399649	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399649	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399637	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399637	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399637	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399637	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399637	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000402845	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000402845	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000402845	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000402845	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000402845	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399591	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399591	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399591	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399591	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399591	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399641	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399641	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399641	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399641	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399641	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000347598	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000347598	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000347598	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000347598	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000347598	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399606	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399606	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399606	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399606	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399606	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399595	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399595	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399595	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399595	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399595	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399601	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399601	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399601	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399601	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399601	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399603	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399603	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399603	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399603	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399603	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399634	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399634	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399634	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399634	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399634	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000399617	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399617	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399617	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399617	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000399617	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000406454	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000406454	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000406454	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000406454	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000406454	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000491104	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000491104	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000491104	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000491104	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000491104	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000389532	ENST00000482893		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
5CDS-5UTR	ENST00000389532	ENST00000371688		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
5UTR-5UTR	ENST00000312405	ENST00000482893		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
5UTR-5UTR	ENST00000312405	ENST00000371688		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
intron-5UTR	ENST00000483991	ENST00000482893		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
intron-5UTR	ENST00000483991	ENST00000371688		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
5CDS-5UTR	ENST00000409386	ENST00000482893		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
5CDS-5UTR	ENST00000409386	ENST00000371688		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CAMSAP1	chr9	138773479	-	LCN8	chr9	139651620	-
In-frame	ENST00000342704	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
5UTR-3CDS	ENST00000375279	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000344201	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000397798	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000346541	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000397800	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000492345	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000359606	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000491618	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
intron-3CDS	ENST00000543126	ENST00000217381		TCGA	RV	SARC	TCGA-X9-A971-01A	CBFA2T2	chr20	32078107	+	SNTA1	chr20	32026832	-
5CDS-5UTR	ENST00000261951	ENST00000393330		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000261951	ENST00000247829		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000261951	ENST00000546561		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000261951	ENST00000552128		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000261951	ENST00000552786		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000393330		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000247829		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000546561		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000393356	ENST00000552128		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000552786		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000502447	ENST00000393330		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000502447	ENST00000247829		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000502447	ENST00000546561		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
intron-intron	ENST00000502447	ENST00000552128		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000502447	ENST00000552786		TCGA	RV	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179980471	+	TSPAN8	chr12	71551567	-
Frame-shit	ENST00000255641	ENST00000354960		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
5CDS-5UTR	ENST00000255641	ENST00000394439		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
5CDS-5UTR	ENST00000255641	ENST00000264805		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
5CDS-intron	ENST00000255641	ENST00000512739		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
intron-3CDS	ENST00000587123	ENST00000354960		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
intron-5UTR	ENST00000587123	ENST00000394439		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
intron-5UTR	ENST00000587123	ENST00000264805		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
intron-intron	ENST00000587123	ENST00000512739		TCGA	RV	SARC	TCGA-DX-A3U5-01A	CSNK1G2	chr19	1969958	+	PDE5A	chr4	120528452	-
Frame-shit	ENST00000577830	ENST00000306052		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000577830	ENST00000371454		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000577830	ENST00000465675		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000577830	ENST00000354412		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000577830	ENST00000347547		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-intron	ENST00000577830	ENST00000460214		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000407144	ENST00000306052		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000407144	ENST00000371454		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000407144	ENST00000465675		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000407144	ENST00000354412		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000407144	ENST00000347547		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-intron	ENST00000407144	ENST00000460214		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000360238	ENST00000306052		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000360238	ENST00000371454		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000360238	ENST00000465675		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000360238	ENST00000354412		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000360238	ENST00000347547		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-intron	ENST00000360238	ENST00000460214		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000577840	ENST00000306052		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
Frame-shit	ENST00000577840	ENST00000371454		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000577840	ENST00000465675		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000577840	ENST00000354412		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-5UTR	ENST00000577840	ENST00000347547		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
5CDS-intron	ENST00000577840	ENST00000460214		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-3CDS	ENST00000578357	ENST00000306052		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-3CDS	ENST00000578357	ENST00000371454		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-5UTR	ENST00000578357	ENST00000465675		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-5UTR	ENST00000578357	ENST00000354412		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-5UTR	ENST00000578357	ENST00000347547		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-intron	ENST00000578357	ENST00000460214		TCGA	RV	SARC	TCGA-DX-AB3A-01A	CUEDC1	chr17	55956972	-	LRP8	chr1	53746387	-
intron-3CDS	ENST00000485760	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000485760	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
5UTR-3CDS	ENST00000371236	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
5UTR-3CDS	ENST00000371236	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000371234	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000371234	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000420954	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000420954	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000439789	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000439789	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000414851	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000414851	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000371231	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
intron-3CDS	ENST00000371231	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
5UTR-3CDS	ENST00000371230	ENST00000371276		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
5UTR-3CDS	ENST00000371230	ENST00000371274		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57889602	-	TTC22	chr1	55251817	-
Frame-shit	ENST00000357674	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000357674	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000357674	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000357674	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000357674	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000314062	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000314062	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000314062	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000314062	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000314062	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000346964	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000346964	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000346964	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000346964	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000346964	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000419354	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000419354	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000419354	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000419354	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000419354	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-3CDS	ENST00000452595	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-3CDS	ENST00000452595	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000452595	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000452595	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000452595	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000422288	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000422288	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000422288	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000422288	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000422288	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000448528	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000448528	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000448528	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000448528	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000448528	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-3CDS	ENST00000443183	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-3CDS	ENST00000443183	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000443183	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000443183	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000443183	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000450955	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000450955	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000450955	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000450955	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000450955	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000392382	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
Frame-shit	ENST00000392382	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000392382	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000392382	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5CDS-5UTR	ENST00000392382	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-3CDS	ENST00000485409	ENST00000338446		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-3CDS	ENST00000485409	ENST00000360570		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000485409	ENST00000393035		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000485409	ENST00000393034		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
intron-5UTR	ENST00000485409	ENST00000464668		TCGA	RV	SARC	TCGA-DX-A8BH-01A	DLG1	chr3	196921296	-	FAIM	chr3	138340249	+
5UTR-3CDS	ENST00000442713	ENST00000228928		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000442713	ENST00000551007		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000442713	ENST00000548514		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-intron	ENST00000442713	ENST00000546638		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000269445	ENST00000228928		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000269445	ENST00000551007		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000269445	ENST00000548514		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-intron	ENST00000269445	ENST00000546638		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000584977	ENST00000228928		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000584977	ENST00000551007		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-3CDS	ENST00000584977	ENST00000548514		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
5UTR-intron	ENST00000584977	ENST00000546638		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
intron-3CDS	ENST00000578396	ENST00000228928		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
intron-3CDS	ENST00000578396	ENST00000551007		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
intron-3CDS	ENST00000578396	ENST00000548514		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
intron-intron	ENST00000578396	ENST00000546638		TCGA	RV	SARC	TCGA-DX-AATS-01A	DYM	chr18	46986768	-	OAS3	chr12	113379375	+
In-frame	ENST00000528282	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000528282	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000528282	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000528282	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000528282	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000528282	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000528282	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000528282	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000528282	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000530481	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000530481	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000530481	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000445890	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000445890	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000445890	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000337057	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000337057	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000337057	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530757	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-5UTR	ENST00000530757	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-intron	ENST00000530757	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
In-frame	ENST00000392427	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000392427	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000392427	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000368128	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000368128	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000368128	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527411	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000527411	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000527411	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000524581	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-5UTR	ENST00000524581	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-intron	ENST00000524581	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525271	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000525271	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000525271	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000525193	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000525193	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000525193	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000527659	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000527659	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000527659	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
Frame-shit	ENST00000529208	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000529208	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-intron	ENST00000529208	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000531410	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-5UTR	ENST00000531410	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-intron	ENST00000531410	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000368226		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000368227		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000532331		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000368213		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000368210		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000368215		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-3CDS	ENST00000530148	ENST00000368207		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-5UTR	ENST00000530148	ENST00000524481		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
intron-intron	ENST00000530148	ENST00000525459		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	EPB41L2	chr6	131276245	-	PTPRK	chr6	128330413	-
5CDS-5UTR	ENST00000230449	ENST00000410107		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000230449	ENST00000397423		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000230449	ENST00000495262		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000230449	ENST00000379597		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000230449	ENST00000316170		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000230449	ENST00000265012		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-5UTR	ENST00000448181	ENST00000410107		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000448181	ENST00000397423		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000448181	ENST00000495262		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000448181	ENST00000379597		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000448181	ENST00000316170		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5CDS-intron	ENST00000448181	ENST00000265012		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
intron-5UTR	ENST00000475028	ENST00000410107		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
intron-intron	ENST00000475028	ENST00000397423		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
intron-intron	ENST00000475028	ENST00000495262		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
intron-intron	ENST00000475028	ENST00000379597		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
intron-intron	ENST00000475028	ENST00000316170		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
intron-intron	ENST00000475028	ENST00000265012		TCGA	RV	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10493053	+
5UTR-3CDS	ENST00000418596	ENST00000263960		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
5UTR-intron	ENST00000418596	ENST00000409398		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
5UTR-3UTR	ENST00000418596	ENST00000488445		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
5UTR-5UTR	ENST00000418596	ENST00000545340		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
5UTR-5UTR	ENST00000418596	ENST00000409010		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
intron-3CDS	ENST00000485144	ENST00000263960		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
intron-intron	ENST00000485144	ENST00000409398		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
intron-3UTR	ENST00000485144	ENST00000488445		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
intron-5UTR	ENST00000485144	ENST00000545340		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
intron-5UTR	ENST00000485144	ENST00000409010		TCGA	RV	SARC	TCGA-DX-A3UF-01A	FAM126B	chr2	201910219	-	COQ10B	chr2	198324656	+
Frame-shit	ENST00000238823	ENST00000344773		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000238823	ENST00000379624		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000238823	ENST00000342045		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000238823	ENST00000379632		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000238823	ENST00000361704		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5CDS-intron	ENST00000238823	ENST00000603461		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000403368	ENST00000344773		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000403368	ENST00000379624		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000403368	ENST00000342045		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000403368	ENST00000379632		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
Frame-shit	ENST00000403368	ENST00000361704		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5CDS-intron	ENST00000403368	ENST00000603461		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000441530	ENST00000344773		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000441530	ENST00000379624		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000441530	ENST00000342045		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000441530	ENST00000379632		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000441530	ENST00000361704		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-intron	ENST00000441530	ENST00000603461		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000498340	ENST00000344773		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000498340	ENST00000379624		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000498340	ENST00000342045		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000498340	ENST00000379632		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-3CDS	ENST00000498340	ENST00000361704		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5UTR-intron	ENST00000498340	ENST00000603461		TCGA	RV	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28460069	+
5CDS-5UTR	ENST00000250113	ENST00000355854		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000250113	ENST00000347776		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000250113	ENST00000409308		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000250113	ENST00000410043		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
5CDS-intron	ENST00000250113	ENST00000409130		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
5CDS-5UTR	ENST00000250113	ENST00000476943		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000573057	ENST00000355854		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000573057	ENST00000347776		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000573057	ENST00000409308		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000573057	ENST00000410043		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
intron-intron	ENST00000573057	ENST00000409130		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
intron-5UTR	ENST00000573057	ENST00000476943		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FXR2	chr17	7506227	-	CAB39L	chr13	49957077	-
5UTR-3CDS	ENST00000228955	ENST00000261402		TCGA	RV	SARC	TCGA-PC-A5DN-01A	GTF2H3	chr12	124118419	+	NUAK1	chr12	106466621	-
Frame-shit	ENST00000543341	ENST00000261402		TCGA	RV	SARC	TCGA-PC-A5DN-01A	GTF2H3	chr12	124118419	+	NUAK1	chr12	106466621	-
5UTR-intron	ENST00000297977	ENST00000522706		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000297977	ENST00000262109		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000297977	ENST00000518277		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000506585	ENST00000522706		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000506585	ENST00000262109		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000506585	ENST00000518277		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000373177	ENST00000522706		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000373177	ENST00000262109		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5UTR-intron	ENST00000373177	ENST00000518277		TCGA	RV	SARC	TCGA-DX-A3LY-01B	HDX	chrX	83757350	-	ERICH1	chr8	614676	-
5CDS-5UTR	ENST00000341500	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000341500	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000341500	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000341500	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000341500	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000341500	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000341500	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-5UTR	ENST00000341500	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-5UTR	ENST00000302850	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000302850	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000302850	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000302850	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000302850	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000302850	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000302850	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-5UTR	ENST00000302850	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HS-01A	INSR	chr19	7293803	-	MGAT4C	chr12	86829042	-
5CDS-intron	ENST00000378076	ENST00000378036		TCGA	RV	SARC	TCGA-IE-A4EH-01A	ITGA8	chr10	15713602	-	FAM188A	chr10	15889942	-
5CDS-5UTR	ENST00000378076	ENST00000477891		TCGA	RV	SARC	TCGA-IE-A4EH-01A	ITGA8	chr10	15713602	-	FAM188A	chr10	15889942	-
5CDS-5UTR	ENST00000378076	ENST00000277632		TCGA	RV	SARC	TCGA-IE-A4EH-01A	ITGA8	chr10	15713602	-	FAM188A	chr10	15889942	-
intron-intron	ENST00000477064	ENST00000378036		TCGA	RV	SARC	TCGA-IE-A4EH-01A	ITGA8	chr10	15713602	-	FAM188A	chr10	15889942	-
intron-5UTR	ENST00000477064	ENST00000477891		TCGA	RV	SARC	TCGA-IE-A4EH-01A	ITGA8	chr10	15713602	-	FAM188A	chr10	15889942	-
intron-5UTR	ENST00000477064	ENST00000277632		TCGA	RV	SARC	TCGA-IE-A4EH-01A	ITGA8	chr10	15713602	-	FAM188A	chr10	15889942	-
Frame-shit	ENST00000283249	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
Frame-shit	ENST00000283249	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000283249	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000283249	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
intron-3CDS	ENST00000485635	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
intron-3CDS	ENST00000485635	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
intron-intron	ENST00000485635	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
intron-5UTR	ENST00000485635	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
Frame-shit	ENST00000428609	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
Frame-shit	ENST00000428609	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000428609	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000428609	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
Frame-shit	ENST00000409967	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
Frame-shit	ENST00000409967	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000409967	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000409967	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
In-frame	ENST00000409872	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
In-frame	ENST00000409872	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000409872	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000409872	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	ITGB6	chr2	160964190	-	CNOT2	chr12	70731169	+
5UTR-5UTR	ENST00000264501	ENST00000226574		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
5UTR-5UTR	ENST00000264501	ENST00000394820		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
5UTR-5UTR	ENST00000264501	ENST00000505458		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
5UTR-intron	ENST00000264501	ENST00000510638		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
5UTR-intron	ENST00000264501	ENST00000600343		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000455637	ENST00000226574		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000455637	ENST00000394820		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000455637	ENST00000505458		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-intron	ENST00000455637	ENST00000510638		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-intron	ENST00000455637	ENST00000600343		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000388738	ENST00000226574		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000388738	ENST00000394820		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000388738	ENST00000505458		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-intron	ENST00000388738	ENST00000510638		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-intron	ENST00000388738	ENST00000600343		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000495260	ENST00000226574		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000495260	ENST00000394820		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-5UTR	ENST00000495260	ENST00000505458		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-intron	ENST00000495260	ENST00000510638		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
intron-intron	ENST00000495260	ENST00000600343		TCGA	RV	SARC	TCGA-DX-A3U5-01A	KIAA1109	chr4	123075267	+	NFKB1	chr4	103446669	+
In-frame	ENST00000418310	ENST00000398291		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LIMK1	chr7	73530288	+	GNAT3	chr7	80123963	-
In-frame	ENST00000336180	ENST00000398291		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LIMK1	chr7	73530288	+	GNAT3	chr7	80123963	-
In-frame	ENST00000538333	ENST00000398291		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LIMK1	chr7	73530288	+	GNAT3	chr7	80123963	-
intron-3CDS	ENST00000491052	ENST00000398291		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LIMK1	chr7	73530288	+	GNAT3	chr7	80123963	-
Frame-shit	ENST00000368468	ENST00000335154		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368468	ENST00000550488		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368468	ENST00000352151		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368468	ENST00000293590		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
5CDS-intron	ENST00000368468	ENST00000550668		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368466	ENST00000335154		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368466	ENST00000550488		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368466	ENST00000352151		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000368466	ENST00000293590		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
5CDS-intron	ENST00000368466	ENST00000550668		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MAN1A1	chr6	119611848	-	FMNL3	chr12	50055832	-
Frame-shit	ENST00000380338	ENST00000380672		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000380338	ENST00000380667		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000380338	ENST00000545497		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000380338	ENST00000380666		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5CDS-intron	ENST00000380338	ENST00000471301		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000355930	ENST00000380672		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000355930	ENST00000380667		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000355930	ENST00000545497		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000355930	ENST00000380666		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-intron	ENST00000355930	ENST00000471301		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000429426	ENST00000380672		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000429426	ENST00000380667		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000429426	ENST00000545497		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000429426	ENST00000380666		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5CDS-intron	ENST00000429426	ENST00000471301		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000475957	ENST00000380672		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000475957	ENST00000380667		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000475957	ENST00000545497		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-3CDS	ENST00000475957	ENST00000380666		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
5UTR-intron	ENST00000475957	ENST00000471301		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
intron-3CDS	ENST00000380321	ENST00000380672		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
intron-3CDS	ENST00000380321	ENST00000380667		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
intron-3CDS	ENST00000380321	ENST00000545497		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
intron-3CDS	ENST00000380321	ENST00000380666		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
intron-intron	ENST00000380321	ENST00000471301		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MLLT3	chr9	20620653	-	BNC2	chr9	16437522	-
Frame-shit	ENST00000313608	ENST00000240364		TCGA	RV	SARC	TCGA-SI-A71O-06A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000313608	ENST00000513602		TCGA	RV	SARC	TCGA-SI-A71O-06A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000313608	ENST00000514018		TCGA	RV	SARC	TCGA-SI-A71O-06A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
Frame-shit	ENST00000578444	ENST00000240364		TCGA	RV	SARC	TCGA-SI-A71O-06A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000578444	ENST00000513602		TCGA	RV	SARC	TCGA-SI-A71O-06A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000578444	ENST00000514018		TCGA	RV	SARC	TCGA-SI-A71O-06A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
Frame-shit	ENST00000522532	ENST00000343508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000522532	ENST00000297405		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000522532	ENST00000455883		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000522532	ENST00000352409		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000522532	ENST00000519485		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000276689	ENST00000343508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000276689	ENST00000297405		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000276689	ENST00000455883		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000276689	ENST00000352409		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000276689	ENST00000519485		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000518008	ENST00000343508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000518008	ENST00000297405		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000518008	ENST00000455883		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000518008	ENST00000352409		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000518008	ENST00000519485		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517367	ENST00000343508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517367	ENST00000297405		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517367	ENST00000455883		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
Frame-shit	ENST00000517367	ENST00000352409		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
5CDS-intron	ENST00000517367	ENST00000519485		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000517830	ENST00000343508		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000517830	ENST00000297405		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000517830	ENST00000455883		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
intron-3CDS	ENST00000517830	ENST00000352409		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
intron-intron	ENST00000517830	ENST00000519485		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NDUFB9	chr8	125555520	+	CSMD3	chr8	114327022	-
5CDS-5UTR	ENST00000266742	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000266742	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000266742	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000266742	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000266742	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000266742	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000429527	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000429527	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000429527	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000429527	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000429527	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000429527	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000555114	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000555114	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000555114	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000555114	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000555114	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000555114	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000411739	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000411739	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000411739	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000411739	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-5UTR	ENST00000411739	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
intron-intron	ENST00000411739	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000557644	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000557644	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000557644	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000557644	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-5UTR	ENST00000557644	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5CDS-intron	ENST00000557644	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-5UTR	ENST00000457368	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-5UTR	ENST00000457368	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-5UTR	ENST00000457368	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-5UTR	ENST00000457368	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-5UTR	ENST00000457368	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
5UTR-intron	ENST00000457368	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NEDD1	chr12	97306595	+	PPFIA2	chr12	82148002	-
Frame-shit	ENST00000397661	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000397661	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000397661	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000592199	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000592199	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000592199	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000587760	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000587760	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000587760	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000585575	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000585575	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000585575	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000360105	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000360105	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000360105	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000588228	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000588228	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000588228	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000587260	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000587260	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000587260	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000358552	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
Frame-shit	ENST00000358552	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5CDS-intron	ENST00000358552	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
intron-3CDS	ENST00000588680	ENST00000265362		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
intron-3CDS	ENST00000588680	ENST00000436949		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
intron-intron	ENST00000588680	ENST00000471474		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NFIX	chr19	13136366	+	SEMA3A	chr7	83614793	-
5UTR-3CDS	ENST00000427410	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000427410	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000427410	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-intron	ENST00000427410	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000447388	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000447388	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000447388	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-intron	ENST00000447388	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000425457	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000425457	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000425457	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-intron	ENST00000425457	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000456393	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000456393	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000456393	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-intron	ENST00000456393	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000372654	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000372654	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-3CDS	ENST00000372654	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
5UTR-intron	ENST00000372654	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372653	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372653	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372653	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-intron	ENST00000372653	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372652	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372652	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372652	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-intron	ENST00000372652	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372651	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372651	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000372651	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-intron	ENST00000372651	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000440226	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000440226	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000440226	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-intron	ENST00000440226	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000308733	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000308733	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000308733	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-intron	ENST00000308733	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000483091	ENST00000396153		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000483091	ENST00000371778		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-3CDS	ENST00000483091	ENST00000545823		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
intron-intron	ENST00000483091	ENST00000472808		TCGA	RV	SARC	TCGA-DX-AATS-01A	NFYC	chr1	41157539	+	FAF1	chr1	50957473	-
Frame-shit	ENST00000285968	ENST00000307271		TCGA	RV	SARC	TCGA-DX-A8BR-01A	NUP205	chr7	135292119	+	GIMAP8	chr7	150171100	+
intron-3CDS	ENST00000440390	ENST00000307271		TCGA	RV	SARC	TCGA-DX-A8BR-01A	NUP205	chr7	135292119	+	GIMAP8	chr7	150171100	+
intron-3CDS	ENST00000489493	ENST00000307271		TCGA	RV	SARC	TCGA-DX-A8BR-01A	NUP205	chr7	135292119	+	GIMAP8	chr7	150171100	+
intron-5UTR	ENST00000541951	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000541951	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000541951	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000541951	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000541951	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000541951	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000310571	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000310571	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000310571	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000310571	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000310571	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-intron	ENST00000310571	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000535604	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000535604	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000535604	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000535604	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000535604	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000535604	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000536003	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000536003	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000536003	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000536003	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000536003	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000536003	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000544552	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000544552	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000544552	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000544552	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-5UTR	ENST00000544552	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5UTR-intron	ENST00000544552	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000376384	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000376384	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000376384	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000376384	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000376384	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000376384	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000543079	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000543079	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000543079	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000543079	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000543079	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000543079	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000544909	ENST00000491161		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000544909	ENST00000376073		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000544909	ENST00000340027		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000544909	ENST00000376072		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-5UTR	ENST00000544909	ENST00000376071		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000497117		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000420556		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000432392		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000457547		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000419728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000498490		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000433654		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000447248		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000418936		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000420485		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000491762		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000439584		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000415123		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000436623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000455448		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000459657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000455825		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000435674		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000412603		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000438663		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000495500		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000383478		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000383477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000383476		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000400241		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000494590		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000430599		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000446756		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000441372		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000453657		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000489751		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000437517		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000436253		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000452296		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
intron-intron	ENST00000544909	ENST00000419086		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PAAF1	chr11	73588113	+	NCR3	chr6	31557676	-
5CDS-5UTR	ENST00000339082	ENST00000553851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000376372		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000322995		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000356463		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000485908		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000473974		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000376368		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000396681		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000339082	ENST00000465431		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000553851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000376372		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000322995		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000356463		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000485908		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000473974		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000376368		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000396681		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000601723	ENST00000465431		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000553851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000376372		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000322995		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000356463		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000485908		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000473974		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000376368		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000396681		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000340093	ENST00000465431		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000553851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000376372		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000322995		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000356463		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000485908		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000473974		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000376368		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000396681		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000221264	ENST00000465431		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLAUR	chr19	44169468	-	WDR45	chrX	48935771	-
5CDS-5UTR	ENST00000566983	ENST00000268251		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000566983	ENST00000396600		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000566983	ENST00000563215		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000566983	ENST00000567812		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000566983	ENST00000425191		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000566983	ENST00000569156		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000268261	ENST00000268251		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000268261	ENST00000396600		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000268261	ENST00000563215		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000268261	ENST00000567812		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000268261	ENST00000425191		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000268261	ENST00000569156		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000539622	ENST00000268251		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000539622	ENST00000396600		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000539622	ENST00000563215		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000539622	ENST00000567812		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000539622	ENST00000425191		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000539622	ENST00000569156		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000537352	ENST00000268251		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000537352	ENST00000396600		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000537352	ENST00000563215		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000537352	ENST00000567812		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000537352	ENST00000425191		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000537352	ENST00000569156		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000569958	ENST00000268251		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000569958	ENST00000396600		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000569958	ENST00000563215		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-intron	ENST00000569958	ENST00000567812		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000569958	ENST00000425191		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5CDS-5UTR	ENST00000569958	ENST00000569156		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
intron-5UTR	ENST00000565837	ENST00000268251		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
intron-5UTR	ENST00000565837	ENST00000396600		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
intron-intron	ENST00000565837	ENST00000563215		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
intron-intron	ENST00000565837	ENST00000567812		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
intron-5UTR	ENST00000565837	ENST00000425191		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
intron-5UTR	ENST00000565837	ENST00000569156		TCGA	RV	SARC	TCGA-DX-A23V-01A	PMM2	chr16	8905570	+	ABAT	chr16	8829556	+
5UTR-3CDS	ENST00000396000	ENST00000589123		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000396000	ENST00000346156		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000396000	ENST00000395111		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000396000	ENST00000586919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000396000	ENST00000341919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000396000	ENST00000590282		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000396000	ENST00000443272		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000396000	ENST00000588839		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000262735	ENST00000589123		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000262735	ENST00000346156		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000262735	ENST00000395111		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000262735	ENST00000586919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000262735	ENST00000341919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000262735	ENST00000590282		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000262735	ENST00000443272		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000262735	ENST00000588839		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000407236	ENST00000589123		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000407236	ENST00000346156		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000407236	ENST00000395111		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-3CDS	ENST00000407236	ENST00000586919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000407236	ENST00000341919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000407236	ENST00000590282		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000407236	ENST00000443272		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5UTR-intron	ENST00000407236	ENST00000588839		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000481567	ENST00000589123		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000481567	ENST00000346156		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000481567	ENST00000395111		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000481567	ENST00000586919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000481567	ENST00000341919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000481567	ENST00000590282		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000481567	ENST00000443272		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000481567	ENST00000588839		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000402126	ENST00000589123		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000402126	ENST00000346156		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000402126	ENST00000395111		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000402126	ENST00000586919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000402126	ENST00000341919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000402126	ENST00000590282		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000402126	ENST00000443272		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000402126	ENST00000588839		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000434345	ENST00000589123		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000434345	ENST00000346156		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000434345	ENST00000395111		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-3CDS	ENST00000434345	ENST00000586919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000434345	ENST00000341919		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000434345	ENST00000590282		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000434345	ENST00000443272		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
intron-intron	ENST00000434345	ENST00000588839		TCGA	RV	SARC	TCGA-WK-A8XX-01A	PPARA	chr22	46547873	+	NFIC	chr19	3456548	+
5CDS-5UTR	ENST00000549396	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549396	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549396	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549396	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549396	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549396	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549396	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000549396	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000550584	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000550584	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000550584	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000550584	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000550584	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000550584	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000550584	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000550584	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000549325	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549325	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549325	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549325	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549325	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549325	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000549325	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000549325	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000545296	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000545296	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000545296	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000545296	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000545296	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000545296	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000545296	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000545296	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000550359	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000550359	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000550359	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000550359	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000550359	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000550359	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000550359	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000550359	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000407050	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000407050	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000407050	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000407050	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000407050	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000407050	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000407050	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000407050	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000333447	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000333447	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000333447	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000333447	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000333447	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000333447	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000333447	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000333447	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000548586	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000548586	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000548586	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000548586	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000548586	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000548586	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000548586	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000548586	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000443686	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000443686	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000443686	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000443686	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000443686	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000443686	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000443686	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000443686	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000552948	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000552948	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000552948	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000552948	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000552948	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000552948	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-intron	ENST00000552948	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5CDS-5UTR	ENST00000552948	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000541570	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541570	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541570	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541570	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541570	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541570	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541570	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000541570	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000541017	ENST00000549405		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541017	ENST00000393205		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541017	ENST00000332156		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541017	ENST00000604798		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541017	ENST00000552808		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541017	ENST00000548651		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-intron	ENST00000541017	ENST00000552435		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
intron-5UTR	ENST00000541017	ENST00000602941		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82147752	-	MGAT4C	chr12	86727905	-
5UTR-3CDS	ENST00000375114	ENST00000262919		TCGA	RV	SARC	TCGA-SI-A71O-01A	RALY	chr20	32619410	+	ATRN	chr20	3515900	+
5UTR-3CDS	ENST00000375114	ENST00000446916		TCGA	RV	SARC	TCGA-SI-A71O-01A	RALY	chr20	32619410	+	ATRN	chr20	3515900	+
5UTR-3CDS	ENST00000246194	ENST00000262919		TCGA	RV	SARC	TCGA-SI-A71O-01A	RALY	chr20	32619410	+	ATRN	chr20	3515900	+
5UTR-3CDS	ENST00000246194	ENST00000446916		TCGA	RV	SARC	TCGA-SI-A71O-01A	RALY	chr20	32619410	+	ATRN	chr20	3515900	+
intron-3CDS	ENST00000493399	ENST00000262919		TCGA	RV	SARC	TCGA-SI-A71O-01A	RALY	chr20	32619410	+	ATRN	chr20	3515900	+
intron-3CDS	ENST00000493399	ENST00000446916		TCGA	RV	SARC	TCGA-SI-A71O-01A	RALY	chr20	32619410	+	ATRN	chr20	3515900	+
intron-3CDS	ENST00000372189	ENST00000371942		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-intron	ENST00000372189	ENST00000371935		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-5UTR	ENST00000372189	ENST00000478037		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
Frame-shit	ENST00000372195	ENST00000371942		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
5CDS-intron	ENST00000372195	ENST00000371935		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
5CDS-5UTR	ENST00000372195	ENST00000478037		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-3CDS	ENST00000372190	ENST00000371942		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-intron	ENST00000372190	ENST00000371935		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-5UTR	ENST00000372190	ENST00000478037		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-3CDS	ENST00000481260	ENST00000371942		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-intron	ENST00000481260	ENST00000371935		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
intron-5UTR	ENST00000481260	ENST00000478037		TCGA	RV	SARC	TCGA-DX-AB2E-01A	RAPGEF1	chr9	134615157	-	REXO4	chr9	136278041	-
5CDS-5UTR	ENST00000367771	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367771	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367771	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000367771	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367771	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367772	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367772	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367772	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000367772	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367772	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367770	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367770	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367770	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000367770	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000367770	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000470238	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000470238	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000470238	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5UTR-intron	ENST00000470238	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000470238	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SCYL3	chr1	169857817	-	TSPAN8	chr12	71551567	-
Frame-shit	ENST00000403712	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000403712	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000403712	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
In-frame	ENST00000405430	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000405430	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000405430	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
Frame-shit	ENST00000356150	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000356150	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000356150	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
Frame-shit	ENST00000403658	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000403658	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000403658	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5UTR-3CDS	ENST00000468321	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5UTR-intron	ENST00000468321	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5UTR-intron	ENST00000468321	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
intron-3CDS	ENST00000402632	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
intron-intron	ENST00000402632	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
intron-intron	ENST00000402632	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
Frame-shit	ENST00000415006	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000415006	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000415006	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
In-frame	ENST00000403657	ENST00000367321		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000403657	ENST00000367307		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
5CDS-intron	ENST00000403657	ENST00000478643		TCGA	RV	SARC	TCGA-X2-A95T-01A	SH3YL1	chr2	229966	-	MTHFD1L	chr6	151243341	+
In-frame	ENST00000374232	ENST00000313050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-5UTR	ENST00000374232	ENST00000467838		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-5UTR	ENST00000374232	ENST00000371706		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-5UTR	ENST00000374232	ENST00000313084		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-5UTR	ENST00000374232	ENST00000290037		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-5UTR	ENST00000374232	ENST00000431893		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-intron	ENST00000374232	ENST00000398335		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-3CDS	ENST00000604751	ENST00000313050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-5UTR	ENST00000604751	ENST00000467838		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-5UTR	ENST00000604751	ENST00000371706		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-5UTR	ENST00000604751	ENST00000313084		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-5UTR	ENST00000604751	ENST00000290037		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-5UTR	ENST00000604751	ENST00000431893		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
intron-intron	ENST00000604751	ENST00000398335		TCGA	RV	SARC	TCGA-WK-A8XS-01A	SNX30	chr9	115567247	+	SEC16A	chr9	139338352	-
5CDS-5UTR	ENST00000556553	ENST00000395309		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000556553	ENST00000413890		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000556553	ENST00000438792		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000556553	ENST00000395314		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000556553	ENST00000395308		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000556553	ENST00000395311		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000556553	ENST00000416613		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000556553	ENST00000554507		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000556553	ENST00000555573		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000395309		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000413890		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000438792		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000395314		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000395308		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000395311		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000393545	ENST00000416613		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000393545	ENST00000554507		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000393545	ENST00000555573		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000395309		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000413890		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000438792		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000395314		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000395308		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000395311		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000356583	ENST00000416613		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000356583	ENST00000554507		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000356583	ENST00000555573		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000395309		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000413890		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000438792		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000395314		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000395308		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000395311		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-5UTR	ENST00000554102	ENST00000416613		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-intron	ENST00000554102	ENST00000554507		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
3UTR-intron	ENST00000554102	ENST00000555573		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000395309		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000413890		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000438792		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000395314		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000395308		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000395311		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-5UTR	ENST00000045347	ENST00000416613		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000045347	ENST00000554507		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
5CDS-intron	ENST00000045347	ENST00000555573		TCGA	RV	SARC	TCGA-SI-A71O-06A	SPATA7	chr14	88852181	+	KTN1	chr14	56078737	+
Frame-shit	ENST00000355086	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000355086	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000355086	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000355086	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000355086	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000355086	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
Frame-shit	ENST00000357825	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000357825	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000357825	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000357825	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000357825	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000357825	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000543397	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000543397	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000543397	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000543397	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000543397	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000543397	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	SRGAP1	chr12	64238663	+	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000536230	ENST00000375375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000536230	ENST00000420770		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000536230	ENST00000400661		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
5UTR-3CDS	ENST00000392282	ENST00000375375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
5UTR-3CDS	ENST00000392282	ENST00000420770		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
5UTR-3CDS	ENST00000392282	ENST00000400661		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000538427	ENST00000375375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000538427	ENST00000420770		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000538427	ENST00000400661		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000367456	ENST00000375375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000367456	ENST00000420770		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000367456	ENST00000400661		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000461481	ENST00000375375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000461481	ENST00000420770		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000461481	ENST00000400661		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000286332	ENST00000375375		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000286332	ENST00000420770		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
intron-3CDS	ENST00000286332	ENST00000400661		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TAB2	chr6	149639151	+	PAX7	chr1	19062126	+
In-frame	ENST00000424789	ENST00000397843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61151375	+	ARHGEF12	chr11	120317112	+
In-frame	ENST00000424789	ENST00000356641		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61151375	+	ARHGEF12	chr11	120317112	+
In-frame	ENST00000424789	ENST00000532993		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61151375	+	ARHGEF12	chr11	120317112	+
In-frame	ENST00000389520	ENST00000397843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61151375	+	ARHGEF12	chr11	120317112	+
In-frame	ENST00000389520	ENST00000356641		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61151375	+	ARHGEF12	chr11	120317112	+
In-frame	ENST00000389520	ENST00000532993		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TANC2	chr17	61151375	+	ARHGEF12	chr11	120317112	+
intron-3CDS	ENST00000340353	ENST00000360289		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000340353	ENST00000448642		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000340353	ENST00000404387		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000340353	ENST00000298649		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000340353	ENST00000359426		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-intron	ENST00000340353	ENST00000494253		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000532959	ENST00000360289		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000532959	ENST00000448642		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000532959	ENST00000404387		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000532959	ENST00000298649		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000532959	ENST00000359426		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
5CDS-intron	ENST00000532959	ENST00000494253		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000305494	ENST00000360289		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000305494	ENST00000448642		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000305494	ENST00000404387		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000305494	ENST00000298649		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000305494	ENST00000359426		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
5CDS-intron	ENST00000305494	ENST00000494253		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000535167	ENST00000360289		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000535167	ENST00000448642		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000535167	ENST00000404387		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000535167	ENST00000298649		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
Frame-shit	ENST00000535167	ENST00000359426		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
5CDS-intron	ENST00000535167	ENST00000494253		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000355734	ENST00000360289		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000355734	ENST00000448642		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000355734	ENST00000404387		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000355734	ENST00000298649		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-3CDS	ENST00000355734	ENST00000359426		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
intron-intron	ENST00000355734	ENST00000494253		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	TMEM135	chr11	86868448	+	HK1	chr10	71158351	+
3UTR-intron	ENST00000447733	ENST00000371917		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000447733	ENST00000493140		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000449058	ENST00000371917		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000449058	ENST00000493140		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000425375	ENST00000371917		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000425375	ENST00000493140		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000411850	ENST00000371917		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000411850	ENST00000493140		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000436462	ENST00000371917		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000436462	ENST00000493140		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000382034	ENST00000371917		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000382034	ENST00000493140		TCGA	RV	SARC	TCGA-DX-A3UB-01A	TOM1	chr22	35743965	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000261180	ENST00000548458		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
5CDS-intron	ENST00000261180	ENST00000549893		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
5CDS-intron	ENST00000261180	ENST00000443585		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
5CDS-intron	ENST00000261180	ENST00000552457		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
intron-intron	ENST00000549138	ENST00000548458		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
intron-intron	ENST00000549138	ENST00000549893		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
intron-intron	ENST00000549138	ENST00000443585		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
intron-intron	ENST00000549138	ENST00000552457		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TRHDE	chr12	72680734	+	C12orf75	chr12	105789410	+
Frame-shit	ENST00000344204	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
In-frame	ENST00000344204	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
Frame-shit	ENST00000344204	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
Frame-shit	ENST00000344204	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000344204	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
Frame-shit	ENST00000537187	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
Frame-shit	ENST00000537187	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
Frame-shit	ENST00000537187	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000537187	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-intron	ENST00000509967	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-intron	ENST00000515710	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
intron-intron	ENST00000344135	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TRIO	chr5	14406781	+	TERT	chr5	1282739	-
In-frame	ENST00000372899	ENST00000274695		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-intron	ENST00000372899	ENST00000378624		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-intron	ENST00000372899	ENST00000378610		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-intron	ENST00000372899	ENST00000476517		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
In-frame	ENST00000372901	ENST00000274695		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-intron	ENST00000372901	ENST00000378624		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-intron	ENST00000372901	ENST00000378610		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-intron	ENST00000372901	ENST00000476517		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
3UTR-3CDS	ENST00000372883	ENST00000274695		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
3UTR-intron	ENST00000372883	ENST00000378624		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
3UTR-intron	ENST00000372883	ENST00000378610		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
3UTR-intron	ENST00000372883	ENST00000476517		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
intron-3CDS	ENST00000372903	ENST00000274695		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
intron-intron	ENST00000372903	ENST00000378624		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
intron-intron	ENST00000372903	ENST00000378610		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
intron-intron	ENST00000372903	ENST00000476517		TCGA	RV	SARC	TCGA-DX-AATS-01A	UBR2	chr6	42626562	+	CDKAL1	chr6	20548824	+
5CDS-3UTR	ENST00000436874	ENST00000548757		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VEZT	chr12	95645847	+	C12orf29	chr12	88433925	+
5CDS-3UTR	ENST00000436874	ENST00000356891		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VEZT	chr12	95645847	+	C12orf29	chr12	88433925	+
5UTR-3UTR	ENST00000261219	ENST00000548757		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VEZT	chr12	95645847	+	C12orf29	chr12	88433925	+
5UTR-3UTR	ENST00000261219	ENST00000356891		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VEZT	chr12	95645847	+	C12orf29	chr12	88433925	+
3UTR-3UTR	ENST00000356859	ENST00000548757		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VEZT	chr12	95645847	+	C12orf29	chr12	88433925	+
3UTR-3UTR	ENST00000356859	ENST00000356891		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VEZT	chr12	95645847	+	C12orf29	chr12	88433925	+
5UTR-3CDS	ENST00000462705	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000462705	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000462705	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000462705	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-3CDS	ENST00000393785	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000393785	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000393785	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000393785	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-3CDS	ENST00000481632	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000481632	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000481632	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000481632	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-3CDS	ENST00000471418	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000471418	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000471418	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000471418	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-3CDS	ENST00000357258	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000357258	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000357258	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000357258	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-3CDS	ENST00000464560	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000464560	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000464560	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-intron	ENST00000464560	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-3CDS	ENST00000488663	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-intron	ENST00000488663	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-intron	ENST00000488663	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-intron	ENST00000488663	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-3CDS	ENST00000474710	ENST00000255087		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-intron	ENST00000474710	ENST00000540869		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-intron	ENST00000474710	ENST00000443940		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
intron-intron	ENST00000474710	ENST00000544963		TCGA	RV	SARC	TCGA-K1-A6RV-01A	ZBTB20	chr3	114219199	-	MTL5	chr11	68475968	-
5UTR-3CDS	ENST00000277141	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
Frame-shit	ENST00000375961	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
Frame-shit	ENST00000375960	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
intron-3CDS	ENST00000375957	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
Frame-shit	ENST00000375963	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
intron-3CDS	ENST00000469004	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
intron-3CDS	ENST00000375948	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
intron-3CDS	ENST00000375947	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZCCHC6	chr9	88940249	-	WIF1	chr12	65456356	-
Frame-shit	ENST00000359019	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
Frame-shit	ENST00000359019	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000359019	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000359019	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000359019	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000359019	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
In-frame	ENST00000334822	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
In-frame	ENST00000334822	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000334822	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000334822	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000334822	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000334822	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
In-frame	ENST00000426126	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
In-frame	ENST00000426126	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000426126	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000426126	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000426126	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
5CDS-intron	ENST00000426126	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
intron-3CDS	ENST00000550789	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
intron-3CDS	ENST00000550789	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
intron-intron	ENST00000550789	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
intron-intron	ENST00000550789	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
intron-intron	ENST00000550789	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
intron-intron	ENST00000550789	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ZDHHC17	chr12	77158109	+	NAV3	chr12	78540149	+
In-frame	ENST00000596302	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000596302	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000596302	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000596302	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000596302	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000596302	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000596302	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000596302	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000392288	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000392288	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000392288	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000392288	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000392288	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000392288	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000392288	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000392288	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000594390	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000594390	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000594390	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000594390	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000594390	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000594390	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000594390	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000594390	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-3CDS	ENST00000355504	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-3CDS	ENST00000355504	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-3CDS	ENST00000355504	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-5UTR	ENST00000355504	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-5UTR	ENST00000355504	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-5UTR	ENST00000355504	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-intron	ENST00000355504	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5UTR-intron	ENST00000355504	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000339914	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000339914	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000339914	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000339914	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000339914	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000339914	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000339914	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000339914	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000599461	ENST00000539652		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000599461	ENST00000556010		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000599461	ENST00000358230		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000599461	ENST00000544599		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000599461	ENST00000286424		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000599461	ENST00000398033		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000599461	ENST00000542724		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000599461	ENST00000535812		TCGA	RV	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21580069	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000261880	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000261880	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000261880	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000261880	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-intron	ENST00000261880	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-3CDS	ENST00000538028	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-3CDS	ENST00000538028	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-5UTR	ENST00000538028	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-5UTR	ENST00000538028	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5UTR-intron	ENST00000538028	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000561452	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000561452	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000561452	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000561452	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-intron	ENST00000561452	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000542650	ENST00000327367		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
Frame-shit	ENST00000542650	ENST00000559092		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000542650	ENST00000540846		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-5UTR	ENST00000542650	ENST00000439724		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
5CDS-intron	ENST00000542650	ENST00000537194		TCGA	RV	SARC	TCGA-K1-A42X-02A	AAGAB	chr15	67500900	-	SMAD3	chr15	67457233	+
In-frame	ENST00000548058	ENST00000537081		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
In-frame	ENST00000548058	ENST00000257861		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
5CDS-intron	ENST00000548058	ENST00000550083		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
In-frame	ENST00000261206	ENST00000537081		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
In-frame	ENST00000261206	ENST00000257861		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
5CDS-intron	ENST00000261206	ENST00000550083		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
intron-3CDS	ENST00000548324	ENST00000537081		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
intron-3CDS	ENST00000548324	ENST00000257861		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
intron-intron	ENST00000548324	ENST00000550083		TCGA	RV	SARC	TCGA-3R-A8YX-01A	ACSS3	chr12	81472210	+	AVIL	chr12	58204910	-
Frame-shit	ENST00000422466	ENST00000340827		TCGA	RV	SARC	TCGA-MB-A8JL-01A	ADAL	chr15	43638178	+	C15orf43	chr15	45266065	+
Frame-shit	ENST00000428046	ENST00000340827		TCGA	RV	SARC	TCGA-MB-A8JL-01A	ADAL	chr15	43638178	+	C15orf43	chr15	45266065	+
Frame-shit	ENST00000389651	ENST00000340827		TCGA	RV	SARC	TCGA-MB-A8JL-01A	ADAL	chr15	43638178	+	C15orf43	chr15	45266065	+
Frame-shit	ENST00000562188	ENST00000340827		TCGA	RV	SARC	TCGA-MB-A8JL-01A	ADAL	chr15	43638178	+	C15orf43	chr15	45266065	+
In-frame	ENST00000336665	ENST00000405546		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000336665	ENST00000402096		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000336665	ENST00000404914		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-3UTR	ENST00000336665	ENST00000491867		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000336665	ENST00000396411		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000336665	ENST00000474739		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
In-frame	ENST00000304032	ENST00000405546		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000304032	ENST00000402096		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000304032	ENST00000404914		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-3UTR	ENST00000304032	ENST00000491867		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000304032	ENST00000396411		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000304032	ENST00000474739		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-3CDS	ENST00000409538	ENST00000405546		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000409538	ENST00000402096		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000409538	ENST00000404914		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-3UTR	ENST00000409538	ENST00000491867		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000409538	ENST00000396411		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000409538	ENST00000474739		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-3CDS	ENST00000428334	ENST00000405546		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000428334	ENST00000402096		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000428334	ENST00000404914		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-3UTR	ENST00000428334	ENST00000491867		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000428334	ENST00000396411		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-5UTR	ENST00000428334	ENST00000474739		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
In-frame	ENST00000409457	ENST00000405546		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000409457	ENST00000402096		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000409457	ENST00000404914		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-3UTR	ENST00000409457	ENST00000491867		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000409457	ENST00000396411		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
5CDS-5UTR	ENST00000409457	ENST00000474739		TCGA	RV	SARC	TCGA-DX-A3U7-01A	AGAP1	chr2	236403493	+	ATG4B	chr2	242590425	+
intron-3CDS	ENST00000541285	ENST00000524800		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
intron-3CDS	ENST00000541285	ENST00000367900		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
intron-3CDS	ENST00000541285	ENST00000271452		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
intron-3UTR	ENST00000541285	ENST00000490881		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
Frame-shit	ENST00000399138	ENST00000524800		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
Frame-shit	ENST00000399138	ENST00000367900		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
Frame-shit	ENST00000399138	ENST00000271452		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
5CDS-3UTR	ENST00000399138	ENST00000490881		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ALKBH5	chr17	18088327	+	NUF2	chr1	163306541	+
In-frame	ENST00000371917	ENST00000310998		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
In-frame	ENST00000371917	ENST00000535842		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
In-frame	ENST00000371917	ENST00000375921		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
In-frame	ENST00000371917	ENST00000375938		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
In-frame	ENST00000371917	ENST00000375934		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
In-frame	ENST00000371917	ENST00000375922		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
intron-3CDS	ENST00000493140	ENST00000310998		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
intron-3CDS	ENST00000493140	ENST00000535842		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
intron-3CDS	ENST00000493140	ENST00000375921		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
intron-3CDS	ENST00000493140	ENST00000375938		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
intron-3CDS	ENST00000493140	ENST00000375934		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
intron-3CDS	ENST00000493140	ENST00000375922		TCGA	RV	SARC	TCGA-X6-A7W8-01A	ARFGEF2	chr20	47634087	+	TTLL9	chr20	30510766	+
5UTR-3CDS	ENST00000350425	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000350425	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000350425	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000350425	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000350425	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000350425	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000343533	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000343533	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000343533	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000343533	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000343533	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000343533	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000341514	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000341514	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000341514	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000341514	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000341514	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000341514	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ATP7A	chrX	77166332	+	PTPRR	chr12	71033057	-
In-frame	ENST00000406775	ENST00000369905		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000406775	ENST00000470322		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000406775	ENST00000487599		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-5UTR	ENST00000406775	ENST00000545684		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000406775	ENST00000446605		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
In-frame	ENST00000342771	ENST00000369905		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000342771	ENST00000470322		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000342771	ENST00000487599		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-5UTR	ENST00000342771	ENST00000545684		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000342771	ENST00000446605		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
In-frame	ENST00000403018	ENST00000369905		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000403018	ENST00000470322		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000403018	ENST00000487599		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-5UTR	ENST00000403018	ENST00000545684		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
5CDS-intron	ENST00000403018	ENST00000446605		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
intron-3CDS	ENST00000489774	ENST00000369905		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
intron-intron	ENST00000489774	ENST00000470322		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
intron-intron	ENST00000489774	ENST00000487599		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
intron-5UTR	ENST00000489774	ENST00000545684		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
intron-intron	ENST00000489774	ENST00000446605		TCGA	RV	SARC	TCGA-LI-A67I-01A	AUTS2	chr7	69364484	+	ACTR1A	chr10	104250370	-
Frame-shit	ENST00000234739	ENST00000235307		TCGA	RV	SARC	TCGA-VT-AB3D-01A	BCL9	chr1	147087702	+	C1orf21	chr1	184588652	+
5CDS-3UTR	ENST00000234739	ENST00000367514		TCGA	RV	SARC	TCGA-VT-AB3D-01A	BCL9	chr1	147087702	+	C1orf21	chr1	184588652	+
Frame-shit	ENST00000473292	ENST00000235307		TCGA	RV	SARC	TCGA-VT-AB3D-01A	BCL9	chr1	147087702	+	C1orf21	chr1	184588652	+
5CDS-3UTR	ENST00000473292	ENST00000367514		TCGA	RV	SARC	TCGA-VT-AB3D-01A	BCL9	chr1	147087702	+	C1orf21	chr1	184588652	+
Frame-shit	ENST00000311915	ENST00000395065		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
5CDS-5UTR	ENST00000311915	ENST00000425644		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
5CDS-intron	ENST00000311915	ENST00000425463		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
Frame-shit	ENST00000544871	ENST00000395065		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
5CDS-5UTR	ENST00000544871	ENST00000425644		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
5CDS-intron	ENST00000544871	ENST00000425463		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
Frame-shit	ENST00000398055	ENST00000395065		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
5CDS-5UTR	ENST00000398055	ENST00000425644		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
5CDS-intron	ENST00000398055	ENST00000425463		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
intron-3CDS	ENST00000540673	ENST00000395065		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
intron-5UTR	ENST00000540673	ENST00000425644		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
intron-intron	ENST00000540673	ENST00000425463		TCGA	RV	SARC	TCGA-HB-A3YV-01A	C12orf66	chr12	64609458	-	NXF3	chrX	102339811	-
intron-3CDS	ENST00000269881	ENST00000378641		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-3CDS	ENST00000269881	ENST00000338037		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-3CDS	ENST00000269881	ENST00000378637		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-intron	ENST00000269881	ENST00000494924		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-3CDS	ENST00000602234	ENST00000378641		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-3CDS	ENST00000602234	ENST00000338037		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-3CDS	ENST00000602234	ENST00000378637		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
intron-intron	ENST00000602234	ENST00000494924		TCGA	RV	SARC	TCGA-QQ-A5VB-01A	CALR3	chr19	16738683	-	PLCB1	chr20	8608941	+
5CDS-3UTR	ENST00000379153	ENST00000527001		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000257831		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000450654		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000530286		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000533754		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000531728		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000531794		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
5CDS-5UTR	ENST00000379153	ENST00000527935		TCGA	RV	SARC	TCGA-SI-A71Q-01A	CD83	chr6	14118296	+	EHF	chr11	34664175	+
In-frame	ENST00000266970	ENST00000425394		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000266970	ENST00000440411		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000266970	ENST00000257931		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000266970	ENST00000548043		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
5CDS-intron	ENST00000266970	ENST00000549090		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000553376	ENST00000425394		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000553376	ENST00000440411		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000553376	ENST00000257931		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
In-frame	ENST00000553376	ENST00000548043		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
5CDS-intron	ENST00000553376	ENST00000549090		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000440311	ENST00000425394		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000440311	ENST00000440411		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000440311	ENST00000257931		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000440311	ENST00000548043		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-intron	ENST00000440311	ENST00000549090		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000354056	ENST00000425394		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000354056	ENST00000440411		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000354056	ENST00000257931		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000354056	ENST00000548043		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-intron	ENST00000354056	ENST00000549090		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
3UTR-3CDS	ENST00000556656	ENST00000425394		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
3UTR-3CDS	ENST00000556656	ENST00000440411		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
3UTR-3CDS	ENST00000556656	ENST00000257931		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
3UTR-3CDS	ENST00000556656	ENST00000548043		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
3UTR-intron	ENST00000556656	ENST00000549090		TCGA	RV	SARC	TCGA-DX-A3LW-01A	CDK2	chr12	56363360	+	PAN2	chr12	56719238	-
intron-3CDS	ENST00000361654	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000361654	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000361654	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000545889	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000545889	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000545889	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000302528	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000302528	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
5CDS-5UTR	ENST00000302528	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000358808	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000358808	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
5CDS-5UTR	ENST00000358808	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000537178	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000537178	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
5CDS-5UTR	ENST00000537178	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000540338	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
Frame-shit	ENST00000540338	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
5CDS-5UTR	ENST00000540338	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000536634	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000536634	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000536634	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000540539	ENST00000331738		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000540539	ENST00000354654		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000540539	ENST00000392442		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	CLIP1	chr12	122825300	-	RSRC2	chr12	122992994	-
intron-intron	ENST00000316403	ENST00000534307		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000316403	ENST00000528302		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000316403	ENST00000322535		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000546343	ENST00000534307		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000546343	ENST00000528302		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000546343	ENST00000322535		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000560366	ENST00000534307		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000560366	ENST00000528302		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000560366	ENST00000322535		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000405140	ENST00000534307		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000405140	ENST00000528302		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
intron-intron	ENST00000405140	ENST00000322535		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000523500	ENST00000534307		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000523500	ENST00000528302		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000523500	ENST00000322535		TCGA	RV	SARC	TCGA-DX-A6BB-01A	CLU	chr8	27455513	-	SF3B2	chr11	65836145	+
Frame-shit	ENST00000229379	ENST00000261207		TCGA	RV	SARC	TCGA-PC-A5DN-01A	COX6A1	chr12	120876032	+	PPP1R12A	chr12	80266718	-
Frame-shit	ENST00000229379	ENST00000450142		TCGA	RV	SARC	TCGA-PC-A5DN-01A	COX6A1	chr12	120876032	+	PPP1R12A	chr12	80266718	-
Frame-shit	ENST00000229379	ENST00000437004		TCGA	RV	SARC	TCGA-PC-A5DN-01A	COX6A1	chr12	120876032	+	PPP1R12A	chr12	80266718	-
5CDS-5UTR	ENST00000229379	ENST00000546369		TCGA	RV	SARC	TCGA-PC-A5DN-01A	COX6A1	chr12	120876032	+	PPP1R12A	chr12	80266718	-
5CDS-5UTR	ENST00000229379	ENST00000550107		TCGA	RV	SARC	TCGA-PC-A5DN-01A	COX6A1	chr12	120876032	+	PPP1R12A	chr12	80266718	-
5CDS-intron	ENST00000205402	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000205402	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000205402	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000205402	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000537148	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000537148	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000537148	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000537148	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000440410	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000440410	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000440410	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
intron-intron	ENST00000440410	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000437604	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000437604	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000437604	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
5CDS-intron	ENST00000437604	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
3UTR-intron	ENST00000494441	ENST00000367505		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
3UTR-intron	ENST00000494441	ENST00000367503		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
3UTR-intron	ENST00000494441	ENST00000438092		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
3UTR-intron	ENST00000494441	ENST00000275233		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DLD	chr7	107542838	+	SHPRH	chr6	146185627	-
In-frame	ENST00000378707	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000359836	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000541735	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000343523	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000378677	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000357033	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000474231	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000378723	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000378702	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000361471	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
In-frame	ENST00000378680	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
intron-3CDS	ENST00000288447	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
intron-3CDS	ENST00000445312	ENST00000369308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	DMD	chrX	31279072	-	LIX1L	chr1	145487304	+
Frame-shit	ENST00000358155	ENST00000424107		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000358155	ENST00000558583		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000358155	ENST00000558318		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000358155	ENST00000423335		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000358155	ENST00000482916		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
intron-3CDS	ENST00000367733	ENST00000424107		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
intron-3CDS	ENST00000367733	ENST00000558583		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
intron-intron	ENST00000367733	ENST00000558318		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
intron-intron	ENST00000367733	ENST00000423335		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
intron-intron	ENST00000367733	ENST00000482916		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000355305	ENST00000424107		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000355305	ENST00000558583		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000355305	ENST00000558318		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000355305	ENST00000423335		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000355305	ENST00000482916		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000367731	ENST00000424107		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000367731	ENST00000558583		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000367731	ENST00000558318		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000367731	ENST00000423335		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000367731	ENST00000482916		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000520906	ENST00000424107		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
Frame-shit	ENST00000520906	ENST00000558583		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000520906	ENST00000558318		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000520906	ENST00000423335		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5CDS-intron	ENST00000520906	ENST00000482916		TCGA	RV	SARC	TCGA-DX-A6BH-01A	DNM3	chr1	172222822	+	SHISA9	chr16	13328887	+
5UTR-3CDS	ENST00000342239	ENST00000367669		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
5UTR-3CDS	ENST00000342239	ENST00000308769		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
5UTR-3CDS	ENST00000324109	ENST00000367669		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
5UTR-3CDS	ENST00000324109	ENST00000308769		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
intron-3CDS	ENST00000543621	ENST00000367669		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
intron-3CDS	ENST00000543621	ENST00000308769		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
intron-3CDS	ENST00000540316	ENST00000367669		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
intron-3CDS	ENST00000540316	ENST00000308769		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
intron-3CDS	ENST00000472036	ENST00000367669		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
intron-3CDS	ENST00000472036	ENST00000308769		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	DNMBP	chr10	101769595	-	RFWD2	chr1	176104222	-
Frame-shit	ENST00000396373	ENST00000528282		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
Frame-shit	ENST00000396373	ENST00000530481		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
Frame-shit	ENST00000396373	ENST00000445890		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
Frame-shit	ENST00000396373	ENST00000337057		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000530757		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000392427		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000368128		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000527411		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000524581		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000525271		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000525193		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000527659		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000529208		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-intron	ENST00000396373	ENST00000531410		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5CDS-5UTR	ENST00000396373	ENST00000530148		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-3CDS	ENST00000544715	ENST00000528282		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-3CDS	ENST00000544715	ENST00000530481		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-3CDS	ENST00000544715	ENST00000445890		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-3CDS	ENST00000544715	ENST00000337057		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000530757		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000392427		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000368128		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000527411		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000524581		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000525271		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000525193		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000527659		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000529208		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-intron	ENST00000544715	ENST00000531410		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
3UTR-5UTR	ENST00000544715	ENST00000530148		TCGA	RV	SARC	TCGA-DX-A23Y-01A	ETV6	chr12	11803094	+	EPB41L2	chr6	131222320	-
5UTR-5UTR	ENST00000393674	ENST00000335742		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000393674	ENST00000261509		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000393674	ENST00000505667		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000393674	ENST00000333488		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000393674	ENST00000512127		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-intron	ENST00000393674	ENST00000507735		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000503293	ENST00000335742		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000503293	ENST00000261509		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000503293	ENST00000505667		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000503293	ENST00000333488		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-5UTR	ENST00000503293	ENST00000512127		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
5UTR-intron	ENST00000503293	ENST00000507735		TCGA	RV	SARC	TCGA-X6-A8C6-01A	FBXO8	chr4	175204561	-	PALLD	chr4	169589341	+
intron-intron	ENST00000493559	ENST00000375854		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
intron-intron	ENST00000493559	ENST00000487646		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
intron-3UTR	ENST00000493559	ENST00000375855		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000608872	ENST00000375854		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000608872	ENST00000487646		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
5CDS-3UTR	ENST00000608872	ENST00000375855		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000340778	ENST00000375854		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
5CDS-intron	ENST00000340778	ENST00000487646		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
5CDS-3UTR	ENST00000340778	ENST00000375855		TCGA	RV	SARC	TCGA-HB-A3L4-01A	FBXW2	chr9	123550047	-	NXNL2	chr9	91190002	+
Frame-shit	ENST00000536402	ENST00000274458		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
Frame-shit	ENST00000536402	ENST00000515539		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
5CDS-intron	ENST00000536402	ENST00000503424		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
Frame-shit	ENST00000281092	ENST00000274458		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
Frame-shit	ENST00000281092	ENST00000515539		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
5CDS-intron	ENST00000281092	ENST00000503424		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
3UTR-3CDS	ENST00000502752	ENST00000274458		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
3UTR-3CDS	ENST00000502752	ENST00000515539		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
3UTR-intron	ENST00000502752	ENST00000503424		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
intron-3CDS	ENST00000438717	ENST00000274458		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
intron-3CDS	ENST00000438717	ENST00000515539		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
intron-intron	ENST00000438717	ENST00000503424		TCGA	RV	SARC	TCGA-DX-A8BG-01A	FER	chr5	108171508	+	COMMD10	chr5	115627214	+
5UTR-3CDS	ENST00000285071	ENST00000539941		TCGA	RV	SARC	TCGA-DX-A8BO-01A	FLCN	chr17	17140226	-	COPS3	chr17	17152353	-
5UTR-3CDS	ENST00000285071	ENST00000268717		TCGA	RV	SARC	TCGA-DX-A8BO-01A	FLCN	chr17	17140226	-	COPS3	chr17	17152353	-
5UTR-3CDS	ENST00000285071	ENST00000439936		TCGA	RV	SARC	TCGA-DX-A8BO-01A	FLCN	chr17	17140226	-	COPS3	chr17	17152353	-
5UTR-3CDS	ENST00000389169	ENST00000539941		TCGA	RV	SARC	TCGA-DX-A8BO-01A	FLCN	chr17	17140226	-	COPS3	chr17	17152353	-
5UTR-3CDS	ENST00000389169	ENST00000268717		TCGA	RV	SARC	TCGA-DX-A8BO-01A	FLCN	chr17	17140226	-	COPS3	chr17	17152353	-
5UTR-3CDS	ENST00000389169	ENST00000439936		TCGA	RV	SARC	TCGA-DX-A8BO-01A	FLCN	chr17	17140226	-	COPS3	chr17	17152353	-
Frame-shit	ENST00000335255	ENST00000302538		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
Frame-shit	ENST00000335255	ENST00000544583		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5CDS-intron	ENST00000335255	ENST00000572441		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5CDS-intron	ENST00000335255	ENST00000574437		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5CDS-intron	ENST00000335255	ENST00000291107		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5CDS-intron	ENST00000335255	ENST00000543210		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5CDS-intron	ENST00000335255	ENST00000536794		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5CDS-intron	ENST00000335255	ENST00000573895		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-3CDS	ENST00000529652	ENST00000302538		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-3CDS	ENST00000529652	ENST00000544583		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-intron	ENST00000529652	ENST00000572441		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-intron	ENST00000529652	ENST00000574437		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-intron	ENST00000529652	ENST00000291107		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-intron	ENST00000529652	ENST00000543210		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-intron	ENST00000529652	ENST00000536794		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
intron-intron	ENST00000529652	ENST00000573895		TCGA	RV	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80545148	+	ABR	chr17	986867	-
5UTR-3CDS	ENST00000299293	ENST00000311915		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000299293	ENST00000544871		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000299293	ENST00000398055		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000299293	ENST00000540673		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000549921	ENST00000311915		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000549921	ENST00000544871		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000549921	ENST00000398055		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000549921	ENST00000540673		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000550389	ENST00000311915		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000550389	ENST00000544871		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000550389	ENST00000398055		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000550389	ENST00000540673		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000397997	ENST00000311915		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000397997	ENST00000544871		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000397997	ENST00000398055		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
intron-intron	ENST00000397997	ENST00000540673		TCGA	RV	SARC	TCGA-DX-A2J4-01A	FRS2	chr12	69864310	+	C12orf66	chr12	64609743	-
Frame-shit	ENST00000376621	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
Frame-shit	ENST00000376621	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
Frame-shit	ENST00000376621	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
Frame-shit	ENST00000376621	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
Frame-shit	ENST00000376621	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
5CDS-intron	ENST00000376621	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383450	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383450	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383450	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383450	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383450	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000383450	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000441604	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000441604	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000441604	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000441604	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000441604	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000441604	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550904	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550904	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550904	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550904	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550904	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000550904	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000428189	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000428189	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000428189	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000428189	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000428189	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000428189	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551708	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551708	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551708	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551708	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551708	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000551708	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000437917	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000437917	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000437917	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000437917	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000437917	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000437917	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000548423	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000548423	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000548423	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000548423	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000548423	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000548423	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383596	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383596	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383596	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383596	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000383596	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000383596	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550942	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550942	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550942	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550942	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000550942	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000550942	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000454829	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000454829	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000454829	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000454829	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000454829	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000454829	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000552589	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000552589	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000552589	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000552589	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000552589	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000552589	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000417834	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000417834	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000417834	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000417834	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000417834	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000417834	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551903	ENST00000450536		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551903	ENST00000367663		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551903	ENST00000409812		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551903	ENST00000258062		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-3CDS	ENST00000551903	ENST00000415951		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
intron-intron	ENST00000551903	ENST00000531675		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GNL1	chr6	30520244	-	REPS1	chr6	139242261	-
In-frame	ENST00000264039	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A48N-01A	GPC1	chr2	241375501	+	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000264039	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A48N-01A	GPC1	chr2	241375501	+	XRCC6BP1	chr12	58339411	+
intron-3CDS	ENST00000466624	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A48N-01A	GPC1	chr2	241375501	+	XRCC6BP1	chr12	58339411	+
intron-intron	ENST00000466624	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A48N-01A	GPC1	chr2	241375501	+	XRCC6BP1	chr12	58339411	+
In-frame	ENST00000398810	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398810	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398810	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398810	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000439599	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000439599	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000439599	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000439599	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398812	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398812	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398812	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000398812	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000335866	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000335866	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000335866	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000335866	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000402578	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000402578	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000402578	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000402578	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000403097	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000403097	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000403097	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000403097	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000406641	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000406641	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000406641	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000406641	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000357271	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000357271	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000357271	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000357271	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000407526	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000407526	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000407526	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000407526	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000401949	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000401949	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000401949	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000401949	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000402497	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000402497	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000402497	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000402497	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000483819	ENST00000422156		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000483819	ENST00000540759		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000483819	ENST00000550465		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000483819	ENST00000354947		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GRB10	chr7	50737419	-	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000340170	ENST00000287437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000340170	ENST00000522563		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000340170	ENST00000517315		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000340170	ENST00000521460		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000263208	ENST00000287437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000263208	ENST00000522563		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
Frame-shit	ENST00000263208	ENST00000517315		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000263208	ENST00000521460		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000541063	ENST00000287437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000541063	ENST00000522563		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000541063	ENST00000517315		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000541063	ENST00000521460		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000546308	ENST00000287437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000546308	ENST00000522563		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000546308	ENST00000517315		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000546308	ENST00000521460		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000464189	ENST00000287437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000464189	ENST00000522563		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-3CDS	ENST00000464189	ENST00000517315		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
intron-intron	ENST00000464189	ENST00000521460		TCGA	RV	SARC	TCGA-X6-A8C6-01A	HIRA	chr22	19418963	-	NSMCE2	chr8	126369461	+
5CDS-intron	ENST00000251879	ENST00000535193		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000251879	ENST00000543771		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000251879	ENST00000381306		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000251879	ENST00000381309		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000251879	ENST00000442236		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000251879	ENST00000489243		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000251879	ENST00000536108		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000251879	ENST00000428870		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000251879	ENST00000401787		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000535193		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000543771		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000381306		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000381309		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000442236		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000489243		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000414202	ENST00000536108		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000414202	ENST00000428870		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000414202	ENST00000401787		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000535193		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000543771		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000381306		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000381309		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000442236		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000489243		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000381532	ENST00000536108		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000381532	ENST00000428870		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000381532	ENST00000401787		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000535193		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000543771		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000381306		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000381309		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000442236		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000489243		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000418622	ENST00000536108		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000418622	ENST00000428870		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000418622	ENST00000401787		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000535193		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000543771		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000381306		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000381309		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000442236		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000489243		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000449720	ENST00000536108		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-3UTR	ENST00000449720	ENST00000428870		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5CDS-intron	ENST00000449720	ENST00000401787		TCGA	RV	SARC	TCGA-DX-AB2E-01A	KIAA1432	chr9	5656690	+	KDM4C	chr9	7128066	+
5UTR-5UTR	ENST00000402859	ENST00000248929		TCGA	RV	SARC	TCGA-SI-AA8C-01A	LRP5L	chr22	25771780	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000402859	ENST00000454798		TCGA	RV	SARC	TCGA-SI-AA8C-01A	LRP5L	chr22	25771780	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000444995	ENST00000248929		TCGA	RV	SARC	TCGA-SI-AA8C-01A	LRP5L	chr22	25771780	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000444995	ENST00000454798		TCGA	RV	SARC	TCGA-SI-AA8C-01A	LRP5L	chr22	25771780	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000402785	ENST00000248929		TCGA	RV	SARC	TCGA-SI-AA8C-01A	LRP5L	chr22	25771780	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000402785	ENST00000454798		TCGA	RV	SARC	TCGA-SI-AA8C-01A	LRP5L	chr22	25771780	-	SGSM3	chr22	40796700	+
5UTR-3CDS	ENST00000549405	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-3CDS	ENST00000549405	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-3CDS	ENST00000549405	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000549405	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000393205	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000393205	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000393205	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000393205	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000332156	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000332156	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000332156	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000332156	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000604798	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000604798	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000604798	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000604798	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000552808	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000552808	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000552808	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552808	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000548651	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000548651	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000548651	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000548651	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000552435	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000552435	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-3CDS	ENST00000552435	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
intron-intron	ENST00000552435	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-3CDS	ENST00000602941	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-3CDS	ENST00000602941	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-3CDS	ENST00000602941	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5UTR-intron	ENST00000602941	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	86727843	-	PPFIA2	chr12	81657169	-
5CDS-5UTR	ENST00000367034	ENST00000494696		TCGA	RV	SARC	TCGA-QC-A6FX-01A	MRPL18	chr6	160212158	+	C6orf118	chr6	165703556	-
5CDS-5UTR	ENST00000367034	ENST00000230301		TCGA	RV	SARC	TCGA-QC-A6FX-01A	MRPL18	chr6	160212158	+	C6orf118	chr6	165703556	-
5CDS-3UTR	ENST00000367034	ENST00000543069		TCGA	RV	SARC	TCGA-QC-A6FX-01A	MRPL18	chr6	160212158	+	C6orf118	chr6	165703556	-
3UTR-5UTR	ENST00000480842	ENST00000494696		TCGA	RV	SARC	TCGA-QC-A6FX-01A	MRPL18	chr6	160212158	+	C6orf118	chr6	165703556	-
3UTR-5UTR	ENST00000480842	ENST00000230301		TCGA	RV	SARC	TCGA-QC-A6FX-01A	MRPL18	chr6	160212158	+	C6orf118	chr6	165703556	-
3UTR-3UTR	ENST00000480842	ENST00000543069		TCGA	RV	SARC	TCGA-QC-A6FX-01A	MRPL18	chr6	160212158	+	C6orf118	chr6	165703556	-
Frame-shit	ENST00000266544	ENST00000261250		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
Frame-shit	ENST00000266544	ENST00000545746		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
5CDS-intron	ENST00000266544	ENST00000509318		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
intron-3CDS	ENST00000542369	ENST00000261250		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
intron-3CDS	ENST00000542369	ENST00000545746		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
intron-intron	ENST00000542369	ENST00000509318		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
intron-3CDS	ENST00000540688	ENST00000261250		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
intron-3CDS	ENST00000540688	ENST00000545746		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
intron-intron	ENST00000540688	ENST00000509318		TCGA	RV	SARC	TCGA-DX-A3U5-01A	NDUFA9	chr12	4771801	+	C12orf4	chr12	4600400	-
5UTR-5UTR	ENST00000393249	ENST00000393240		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000393249	ENST00000261205		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000393249	ENST00000457153		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-intron	ENST00000393249	ENST00000552744		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-3UTR	ENST00000393249	ENST00000549454		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000261183	ENST00000393240		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000261183	ENST00000261205		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000261183	ENST00000457153		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-intron	ENST00000261183	ENST00000552744		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-3UTR	ENST00000261183	ENST00000549454		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000393250	ENST00000393240		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000393250	ENST00000261205		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000393250	ENST00000457153		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-intron	ENST00000393250	ENST00000552744		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-3UTR	ENST00000393250	ENST00000549454		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000552178	ENST00000393240		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000552178	ENST00000261205		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000552178	ENST00000457153		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-intron	ENST00000552178	ENST00000552744		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
5UTR-3UTR	ENST00000552178	ENST00000549454		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76953177	-	SYT1	chr12	79371579	+
In-frame	ENST00000372236	ENST00000429849		TCGA	RV	SARC	TCGA-DX-A23Y-01A	POLH	chr6	43573056	+	C12orf71	chr12	27234400	-
In-frame	ENST00000535400	ENST00000429849		TCGA	RV	SARC	TCGA-DX-A23Y-01A	POLH	chr6	43573056	+	C12orf71	chr12	27234400	-
In-frame	ENST00000372226	ENST00000429849		TCGA	RV	SARC	TCGA-DX-A23Y-01A	POLH	chr6	43573056	+	C12orf71	chr12	27234400	-
In-frame	ENST00000253925	ENST00000529202		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000253925	ENST00000263182		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000253925	ENST00000528583		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000253925	ENST00000525090		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
5CDS-3UTR	ENST00000253925	ENST00000527505		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000389547	ENST00000529202		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000389547	ENST00000263182		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000389547	ENST00000528583		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
In-frame	ENST00000389547	ENST00000525090		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
5CDS-3UTR	ENST00000389547	ENST00000527505		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
intron-3CDS	ENST00000530548	ENST00000529202		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
intron-3CDS	ENST00000530548	ENST00000263182		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
intron-3CDS	ENST00000530548	ENST00000528583		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
intron-3CDS	ENST00000530548	ENST00000525090		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
intron-3UTR	ENST00000530548	ENST00000527505		TCGA	RV	SARC	TCGA-VT-A80J-01A	PPFIA1	chr11	70202360	+	BBOX1	chr11	27136999	+
5CDS-5UTR	ENST00000261263	ENST00000549405		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-intron	ENST00000261263	ENST00000393205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261263	ENST00000332156		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261263	ENST00000604798		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261263	ENST00000552808		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261263	ENST00000548651		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261263	ENST00000552435		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
5CDS-5UTR	ENST00000261263	ENST00000602941		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	MGAT4C	chr12	86443501	-
Frame-shit	ENST00000253363	ENST00000353809		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000253363	ENST00000354638		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5CDS-intron	ENST00000253363	ENST00000382996		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000361162	ENST00000353809		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000361162	ENST00000354638		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5CDS-intron	ENST00000361162	ENST00000382996		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000528062	ENST00000353809		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000528062	ENST00000354638		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5CDS-intron	ENST00000528062	ENST00000382996		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-3CDS	ENST00000407261	ENST00000353809		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-3CDS	ENST00000407261	ENST00000354638		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-intron	ENST00000407261	ENST00000382996		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000397370	ENST00000353809		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
Frame-shit	ENST00000397370	ENST00000354638		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5CDS-intron	ENST00000397370	ENST00000382996		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-3CDS	ENST00000463098	ENST00000353809		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-3CDS	ENST00000463098	ENST00000354638		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-intron	ENST00000463098	ENST00000382996		TCGA	RV	SARC	TCGA-FX-A3NK-01A	RBM39	chr20	34328746	-	OCA2	chr15	28171400	-
5UTR-3CDS	ENST00000474820	ENST00000272542		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
5UTR-intron	ENST00000474820	ENST00000480984		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
Frame-shit	ENST00000348849	ENST00000272542		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
5CDS-intron	ENST00000348849	ENST00000480984		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
intron-3CDS	ENST00000409075	ENST00000272542		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
intron-intron	ENST00000409075	ENST00000480984		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
intron-3CDS	ENST00000409289	ENST00000272542		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
intron-intron	ENST00000409289	ENST00000480984		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
Frame-shit	ENST00000392753	ENST00000272542		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
5CDS-intron	ENST00000392753	ENST00000480984		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
intron-3CDS	ENST00000409972	ENST00000272542		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
intron-intron	ENST00000409972	ENST00000480984		TCGA	RV	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	SLC20A1	chr2	113420441	+
In-frame	ENST00000436639	ENST00000368972		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
In-frame	ENST00000436639	ENST00000392644		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
5CDS-intron	ENST00000436639	ENST00000481850		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
intron-3CDS	ENST00000302071	ENST00000368972		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
intron-3CDS	ENST00000302071	ENST00000392644		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
intron-intron	ENST00000302071	ENST00000481850		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
intron-3CDS	ENST00000356644	ENST00000368972		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
intron-3CDS	ENST00000356644	ENST00000392644		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
intron-intron	ENST00000356644	ENST00000481850		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
5UTR-3CDS	ENST00000517548	ENST00000368972		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
5UTR-3CDS	ENST00000517548	ENST00000392644		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
5UTR-intron	ENST00000517548	ENST00000481850		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SESN1	chr6	109414998	-	ARMC2	chr6	109274236	+
5CDS-5UTR	ENST00000409792	ENST00000399036		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
5CDS-5UTR	ENST00000409792	ENST00000357392		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
5CDS-5UTR	ENST00000409792	ENST00000400880		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
5CDS-5UTR	ENST00000409792	ENST00000400882		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
5CDS-intron	ENST00000409792	ENST00000441909		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
intron-5UTR	ENST00000492397	ENST00000399036		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
intron-5UTR	ENST00000492397	ENST00000357392		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
intron-5UTR	ENST00000492397	ENST00000400880		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
intron-5UTR	ENST00000492397	ENST00000400882		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
intron-intron	ENST00000492397	ENST00000441909		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46449559	+
In-frame	ENST00000407327	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000407327	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000335757	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
intron-intron	ENST00000335757	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000586078	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
intron-intron	ENST00000586078	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000588214	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
intron-intron	ENST00000588214	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000546136	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000546136	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000546136	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000546136	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000381381	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000381381	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000381381	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000381381	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000309359	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000309359	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000309359	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000309359	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000451604	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000451604	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000451604	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000451604	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000537393	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000537393	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000537393	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000537393	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000541536	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000541536	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000541536	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000541536	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000396007	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000396007	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000396007	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000396007	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000545921	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000545921	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000545921	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000545921	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000541847	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000541847	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000541847	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000541847	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000441133	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000441133	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-intron	ENST00000441133	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5CDS-5UTR	ENST00000441133	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000536850	ENST00000523102		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000536850	ENST00000524270		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-intron	ENST00000536850	ENST00000519357		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
intron-5UTR	ENST00000536850	ENST00000437851		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SOX5	chr12	23998917	-	SPSB2	chr12	6991451	-
5UTR-intron	ENST00000373129	ENST00000495222		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373129	ENST00000235532		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373129	ENST00000356637		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373129	ENST00000433045		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373129	ENST00000315643		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373129	ENST00000354267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373130	ENST00000495222		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373130	ENST00000235532		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373130	ENST00000356637		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373130	ENST00000433045		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373130	ENST00000315643		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373130	ENST00000354267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373132	ENST00000495222		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373132	ENST00000235532		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000373132	ENST00000356637		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373132	ENST00000433045		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373132	ENST00000315643		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000373132	ENST00000354267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000482458	ENST00000495222		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000482458	ENST00000235532		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-intron	ENST00000482458	ENST00000356637		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000482458	ENST00000433045		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000482458	ENST00000315643		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
5UTR-5UTR	ENST00000482458	ENST00000354267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
intron-intron	ENST00000359297	ENST00000495222		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
intron-intron	ENST00000359297	ENST00000235532		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
intron-intron	ENST00000359297	ENST00000356637		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
intron-5UTR	ENST00000359297	ENST00000433045		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
intron-5UTR	ENST00000359297	ENST00000315643		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
intron-5UTR	ENST00000359297	ENST00000354267		TCGA	RV	SARC	TCGA-DX-A3LY-01B	STK40	chr1	36851324	-	OSCP1	chr1	36904511	-
Frame-shit	ENST00000367255	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000367255	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000367255	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000367255	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000367255	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000367255	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000367255	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000367255	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000356820	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000356820	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000356820	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000356820	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000356820	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000356820	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000356820	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000356820	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000423061	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000423061	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000423061	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000423061	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000423061	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000423061	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000423061	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000423061	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000448038	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000448038	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000448038	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000448038	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000448038	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000448038	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000448038	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000448038	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000341594	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000341594	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000341594	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000341594	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000341594	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000341594	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000341594	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000341594	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000265368	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000265368	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000265368	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000265368	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000265368	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000265368	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000265368	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
5CDS-intron	ENST00000265368	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367253	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367253	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367253	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367253	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367253	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367253	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000367253	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000367253	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367248	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367248	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367248	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367248	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367248	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000367248	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000367248	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000367248	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000413186	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000413186	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000413186	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000413186	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000413186	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000413186	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000413186	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000413186	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000466159	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000466159	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000466159	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000466159	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000466159	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000466159	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000466159	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000466159	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000539504	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000539504	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000539504	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000539504	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000539504	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000539504	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000539504	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000539504	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000347037	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000347037	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000347037	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000347037	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000347037	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000347037	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000347037	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000347037	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000354674	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000354674	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000354674	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000354674	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000354674	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000354674	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000354674	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000354674	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000495090	ENST00000440973		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000495090	ENST00000338799		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000495090	ENST00000456483		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000495090	ENST00000443427		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000495090	ENST00000206249		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-3CDS	ENST00000495090	ENST00000406599		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000495090	ENST00000427531		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
intron-intron	ENST00000495090	ENST00000482101		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYNE1	chr6	152565672	-	ESR1	chr6	152415520	+
Frame-shit	ENST00000550746	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000550746	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000550746	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000550746	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000319106	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000319106	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000319106	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000319106	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000485960	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000485960	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000485960	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000485960	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000393309	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000393309	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-intron	ENST00000393309	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
5CDS-5UTR	ENST00000393309	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
intron-3CDS	ENST00000548679	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
intron-3CDS	ENST00000548679	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
intron-intron	ENST00000548679	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
intron-5UTR	ENST00000548679	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A6BG-01A	TBC1D15	chr12	72290560	+	CNOT2	chr12	70731169	+
Frame-shit	ENST00000221930	ENST00000269967		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TGFB1	chr19	41838033	-	CCDC97	chr19	41822289	+
In-frame	ENST00000393359	ENST00000410059		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-5UTR	ENST00000393359	ENST00000409163		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-5UTR	ENST00000393359	ENST00000393147		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-5UTR	ENST00000393359	ENST00000310323		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-intron	ENST00000393359	ENST00000488208		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
In-frame	ENST00000258449	ENST00000410059		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-5UTR	ENST00000258449	ENST00000409163		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-5UTR	ENST00000258449	ENST00000393147		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-5UTR	ENST00000258449	ENST00000310323		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
5CDS-intron	ENST00000258449	ENST00000488208		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	116066815	+
Frame-shit	ENST00000377044	ENST00000271588		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
Frame-shit	ENST00000377044	ENST00000367492		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
5CDS-intron	ENST00000377044	ENST00000485744		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
Frame-shit	ENST00000377066	ENST00000271588		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
Frame-shit	ENST00000377066	ENST00000367492		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
5CDS-intron	ENST00000377066	ENST00000485744		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
In-frame	ENST00000396272	ENST00000271588		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
In-frame	ENST00000396272	ENST00000367492		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
5CDS-intron	ENST00000396272	ENST00000485744		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74309425	-	HMCN1	chr1	185878469	+
5CDS-5UTR	ENST00000260810	ENST00000374037		TCGA	RV	SARC	TCGA-K1-A42X-01A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
5CDS-5UTR	ENST00000260810	ENST00000544425		TCGA	RV	SARC	TCGA-K1-A42X-01A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
intron-5UTR	ENST00000511439	ENST00000374037		TCGA	RV	SARC	TCGA-K1-A42X-01A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
intron-5UTR	ENST00000511439	ENST00000544425		TCGA	RV	SARC	TCGA-K1-A42X-01A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
Frame-shit	ENST00000166345	ENST00000366935		TCGA	RV	SARC	TCGA-DX-A7EI-01A	TRIP13	chr5	914692	+	GPATCH2	chr1	217604707	-
5CDS-intron	ENST00000166345	ENST00000489246		TCGA	RV	SARC	TCGA-DX-A7EI-01A	TRIP13	chr5	914692	+	GPATCH2	chr1	217604707	-
5CDS-intron	ENST00000166345	ENST00000366934		TCGA	RV	SARC	TCGA-DX-A7EI-01A	TRIP13	chr5	914692	+	GPATCH2	chr1	217604707	-
3UTR-3CDS	ENST00000510412	ENST00000366935		TCGA	RV	SARC	TCGA-DX-A7EI-01A	TRIP13	chr5	914692	+	GPATCH2	chr1	217604707	-
3UTR-intron	ENST00000510412	ENST00000489246		TCGA	RV	SARC	TCGA-DX-A7EI-01A	TRIP13	chr5	914692	+	GPATCH2	chr1	217604707	-
3UTR-intron	ENST00000510412	ENST00000366934		TCGA	RV	SARC	TCGA-DX-A7EI-01A	TRIP13	chr5	914692	+	GPATCH2	chr1	217604707	-
Frame-shit	ENST00000543727	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000543727	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
Frame-shit	ENST00000550559	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000550559	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
Frame-shit	ENST00000548851	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000548851	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
Frame-shit	ENST00000454289	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000454289	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
Frame-shit	ENST00000540550	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000540550	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
Frame-shit	ENST00000323833	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000323833	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
Frame-shit	ENST00000350762	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
5CDS-intron	ENST00000350762	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
3UTR-3CDS	ENST00000497617	ENST00000393217		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
3UTR-intron	ENST00000497617	ENST00000528777		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	LRRIQ1	chr12	85517848	+
In-frame	ENST00000252936	ENST00000371227		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000371249		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000306402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000353505		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000371246		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000347291		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000393949		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000371247		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000607232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000371245		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000361941		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000277982		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000354106		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000371239		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000252936	ENST00000371241		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
5CDS-5UTR	ENST00000252936	ENST00000474353		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371227		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371249		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000306402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000353505		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371246		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000347291		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000393949		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371247		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000607232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371245		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000361941		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000277982		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000354106		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371239		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000417178	ENST00000371241		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
5CDS-5UTR	ENST00000417178	ENST00000474353		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371227		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371249		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000306402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000353505		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371246		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000347291		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000393949		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371247		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000607232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371245		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000361941		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000277982		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000354106		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371239		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000368563	ENST00000371241		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
5CDS-5UTR	ENST00000368563	ENST00000474353		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371227		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371249		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000306402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000353505		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371246		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000347291		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000393949		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371247		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000607232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371245		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000361941		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000277982		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000354106		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371239		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000368562	ENST00000371241		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-5UTR	ENST00000368562	ENST00000474353		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371227		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371249		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000306402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000353505		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371246		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000347291		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000393949		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371247		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000607232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371245		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000361941		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000277982		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000354106		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371239		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
In-frame	ENST00000543663	ENST00000371241		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
5CDS-5UTR	ENST00000543663	ENST00000474353		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371227		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371249		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000306402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000353505		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371246		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000347291		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000393949		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371247		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000607232		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371245		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000361941		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000277982		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000354106		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371239		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-3CDS	ENST00000470829	ENST00000371241		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
intron-5UTR	ENST00000470829	ENST00000474353		TCGA	RV	SARC	TCGA-DX-A8BM-01A	TUBGCP2	chr10	135111456	-	SORBS1	chr10	97144042	-
Frame-shit	ENST00000372899	ENST00000230340		TCGA	RV	SARC	TCGA-DX-A3LU-01A	UBR2	chr6	42620383	+	BYSL	chr6	41895112	+
Frame-shit	ENST00000372901	ENST00000230340		TCGA	RV	SARC	TCGA-DX-A3LU-01A	UBR2	chr6	42620383	+	BYSL	chr6	41895112	+
Frame-shit	ENST00000372883	ENST00000230340		TCGA	RV	SARC	TCGA-DX-A3LU-01A	UBR2	chr6	42620383	+	BYSL	chr6	41895112	+
intron-3CDS	ENST00000372903	ENST00000230340		TCGA	RV	SARC	TCGA-DX-A3LU-01A	UBR2	chr6	42620383	+	BYSL	chr6	41895112	+
intron-3CDS	ENST00000369683	ENST00000033079		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
intron-3CDS	ENST00000369683	ENST00000425075		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
intron-3CDS	ENST00000369683	ENST00000420893		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5UTR-3CDS	ENST00000369680	ENST00000033079		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5UTR-3CDS	ENST00000369680	ENST00000425075		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5UTR-3CDS	ENST00000369680	ENST00000420893		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
Frame-shit	ENST00000502935	ENST00000033079		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
Frame-shit	ENST00000502935	ENST00000425075		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
Frame-shit	ENST00000502935	ENST00000420893		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
Frame-shit	ENST00000322238	ENST00000033079		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
Frame-shit	ENST00000322238	ENST00000425075		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
Frame-shit	ENST00000322238	ENST00000420893		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5UTR-3CDS	ENST00000430337	ENST00000033079		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5UTR-3CDS	ENST00000430337	ENST00000425075		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5UTR-3CDS	ENST00000430337	ENST00000420893		TCGA	RV	SARC	TCGA-WP-A9GB-01A	XPNPEP1	chr10	111674769	-	FAM13B	chr5	137298158	-
5CDS-5UTR	ENST00000359019	ENST00000311083		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000359019	ENST00000552330		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000359019	ENST00000546966		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000359019	ENST00000547435		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000311083		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000552330		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000546966		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000334822	ENST00000547435		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000311083		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000552330		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000546966		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000426126	ENST00000547435		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000311083		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000552330		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000546966		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000550789	ENST00000547435		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ZDHHC17	chr12	77158109	+	CSRP2	chr12	77260041	-
Frame-shit	ENST00000600692	ENST00000346477		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000600692	ENST00000359982		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000600692	ENST00000436458		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000600692	ENST00000343300		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000600692	ENST00000425629		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000600692	ENST00000474054		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000600692	ENST00000391797		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000599296	ENST00000346477		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000599296	ENST00000359982		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000599296	ENST00000436458		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000599296	ENST00000343300		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000599296	ENST00000425629		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000599296	ENST00000474054		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000599296	ENST00000391797		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000594425	ENST00000346477		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000594425	ENST00000359982		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000594425	ENST00000436458		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000594425	ENST00000343300		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000594425	ENST00000425629		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000594425	ENST00000474054		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000594425	ENST00000391797		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000311048	ENST00000346477		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
Frame-shit	ENST00000311048	ENST00000359982		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000311048	ENST00000436458		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000311048	ENST00000343300		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000311048	ENST00000425629		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000311048	ENST00000474054		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5CDS-intron	ENST00000311048	ENST00000391797		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-3CDS	ENST00000594821	ENST00000346477		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-3CDS	ENST00000594821	ENST00000359982		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-intron	ENST00000594821	ENST00000436458		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-intron	ENST00000594821	ENST00000343300		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-intron	ENST00000594821	ENST00000425629		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-intron	ENST00000594821	ENST00000474054		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
intron-intron	ENST00000594821	ENST00000391797		TCGA	RV	SARC	TCGA-3B-A9HX-01A	ZNF431	chr19	21326446	+	SIGLEC6	chr19	52034773	-
5UTR-3UTR	ENST00000293648	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000293648	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000293648	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000448622	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000448622	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000448622	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000453372	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000453372	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000453372	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000541032	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000541032	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000541032	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000590155	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000590155	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000590155	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000453792	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000453792	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000453792	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000537617	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000537617	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000537617	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-3UTR	ENST00000587392	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000587392	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
5UTR-intron	ENST00000587392	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785691	-	SARNP	chr12	56146624	-
3UTR-3CDS	ENST00000339368	ENST00000330852		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
3UTR-3CDS	ENST00000339368	ENST00000288723		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
3UTR-3CDS	ENST00000339368	ENST00000338176		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
Frame-shit	ENST00000509152	ENST00000330852		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
Frame-shit	ENST00000509152	ENST00000288723		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
Frame-shit	ENST00000509152	ENST00000338176		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
Frame-shit	ENST00000526473	ENST00000330852		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
Frame-shit	ENST00000526473	ENST00000288723		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
Frame-shit	ENST00000526473	ENST00000338176		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ZNF595	chr4	53385	+	RAB28	chr4	13383218	-
In-frame	ENST00000264245	ENST00000393425		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ARHGAP31	chr3	119013851	+	CCDC37	chr3	126126015	+
In-frame	ENST00000264245	ENST00000352312		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ARHGAP31	chr3	119013851	+	CCDC37	chr3	126126015	+
In-frame	ENST00000264245	ENST00000510833		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ARHGAP31	chr3	119013851	+	CCDC37	chr3	126126015	+
In-frame	ENST00000264245	ENST00000505024		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ARHGAP31	chr3	119013851	+	CCDC37	chr3	126126015	+
5CDS-intron	ENST00000264245	ENST00000506204		TCGA	RV	SARC	TCGA-SI-A71Q-01A	ARHGAP31	chr3	119013851	+	CCDC37	chr3	126126015	+
In-frame	ENST00000317133	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000317133	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000317133	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000317133	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000317133	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000317133	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000375741	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000375741	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000375741	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000375741	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000375741	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000375741	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000375739	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000375739	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000375739	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000375739	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000375739	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000375739	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000370623	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
In-frame	ENST00000370623	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000370623	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000370623	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000370623	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000370623	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000544132	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000544132	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000544132	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000544132	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000544132	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000544132	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000218789	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000218789	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000218789	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000218789	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000218789	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000218789	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000375736	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000375736	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375736	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375736	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000375736	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375736	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000426073	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000426073	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000426073	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000426073	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000426073	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000426073	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000375737	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000375737	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375737	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375737	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000375737	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375737	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000375723	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000375723	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375723	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375723	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000375723	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000375723	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000478679	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000478679	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000478679	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000478679	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000478679	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000478679	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000483189	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000483189	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000483189	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000483189	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000483189	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000483189	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A23R-01A	ARHGEF7	chr13	111768038	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000323116	ENST00000273654		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
5CDS-intron	ENST00000323116	ENST00000442201		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
5CDS-5UTR	ENST00000323116	ENST00000485055		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
intron-intron	ENST00000493826	ENST00000273654		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
intron-intron	ENST00000493826	ENST00000442201		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
intron-5UTR	ENST00000493826	ENST00000485055		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
intron-intron	ENST00000482794	ENST00000273654		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
intron-intron	ENST00000482794	ENST00000442201		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
intron-5UTR	ENST00000482794	ENST00000485055		TCGA	RV	SARC	TCGA-IE-A3OV-01A	ATP11B	chr3	182577147	+	CCDC39	chr3	180499912	-
In-frame	ENST00000426216	ENST00000293872		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000426216	ENST00000337351		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000426216	ENST00000397783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000426216	ENST00000397780		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
5CDS-intron	ENST00000426216	ENST00000494366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000307671	ENST00000293872		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000307671	ENST00000337351		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000307671	ENST00000397783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
In-frame	ENST00000307671	ENST00000397780		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
5CDS-intron	ENST00000307671	ENST00000494366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000586722	ENST00000293872		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000586722	ENST00000337351		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000586722	ENST00000397783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000586722	ENST00000397780		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-intron	ENST00000586722	ENST00000494366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000591464	ENST00000293872		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000591464	ENST00000337351		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000591464	ENST00000397783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000591464	ENST00000397780		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-intron	ENST00000591464	ENST00000494366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000458297	ENST00000293872		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000458297	ENST00000337351		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000458297	ENST00000397783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000458297	ENST00000397780		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-intron	ENST00000458297	ENST00000494366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000543761	ENST00000293872		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000543761	ENST00000337351		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000543761	ENST00000397783		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-3CDS	ENST00000543761	ENST00000397780		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
intron-intron	ENST00000543761	ENST00000494366		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ATP9B	chr18	76953263	+	LUC7L	chr16	258187	-
5CDS-5UTR	ENST00000366600	ENST00000272163		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
5CDS-5UTR	ENST00000366600	ENST00000338179		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
5CDS-intron	ENST00000366600	ENST00000487054		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
5CDS-5UTR	ENST00000313984	ENST00000272163		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
5CDS-5UTR	ENST00000313984	ENST00000338179		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
5CDS-intron	ENST00000313984	ENST00000487054		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
intron-5UTR	ENST00000494378	ENST00000272163		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
intron-5UTR	ENST00000494378	ENST00000338179		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
intron-intron	ENST00000494378	ENST00000487054		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B3GALNT2	chr1	235634164	-	LBR	chr1	225611791	-
5CDS-5UTR	ENST00000311915	ENST00000546373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000311915	ENST00000551568		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000311915	ENST00000338356		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-intron	ENST00000311915	ENST00000549691		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000544871	ENST00000546373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000544871	ENST00000551568		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000544871	ENST00000338356		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-intron	ENST00000544871	ENST00000549691		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000398055	ENST00000546373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000398055	ENST00000551568		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000398055	ENST00000338356		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-intron	ENST00000398055	ENST00000549691		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
intron-5UTR	ENST00000540673	ENST00000546373		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
intron-5UTR	ENST00000540673	ENST00000551568		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
intron-5UTR	ENST00000540673	ENST00000338356		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
intron-intron	ENST00000540673	ENST00000549691		TCGA	RV	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000235307	ENST00000234816		TCGA	RV	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178838358	-
5CDS-intron	ENST00000235307	ENST00000367629		TCGA	RV	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178838358	-
intron-5UTR	ENST00000367514	ENST00000234816		TCGA	RV	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178838358	-
intron-intron	ENST00000367514	ENST00000367629		TCGA	RV	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178838358	-
Frame-shit	ENST00000397110	ENST00000249071		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000397110	ENST00000406508		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
In-frame	ENST00000397110	ENST00000405484		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000397110	ENST00000401529		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000337843	ENST00000249071		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000337843	ENST00000406508		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000337843	ENST00000405484		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
5CDS-intron	ENST00000337843	ENST00000401529		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
5UTR-3CDS	ENST00000470655	ENST00000249071		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
5UTR-3CDS	ENST00000470655	ENST00000406508		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
5UTR-3CDS	ENST00000470655	ENST00000405484		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
5UTR-intron	ENST00000470655	ENST00000401529		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
intron-3CDS	ENST00000255836	ENST00000249071		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
intron-3CDS	ENST00000255836	ENST00000406508		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
intron-3CDS	ENST00000255836	ENST00000405484		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
intron-intron	ENST00000255836	ENST00000401529		TCGA	RV	SARC	TCGA-FX-A3RE-01A	C1QTNF6	chr22	37581258	-	RAC2	chr22	37622843	-
Frame-shit	ENST00000264645	ENST00000225893		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CASC3	chr17	38297860	+	HNF1B	chr17	36047395	-
Frame-shit	ENST00000264645	ENST00000561193		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CASC3	chr17	38297860	+	HNF1B	chr17	36047395	-
Frame-shit	ENST00000264645	ENST00000560016		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CASC3	chr17	38297860	+	HNF1B	chr17	36047395	-
Frame-shit	ENST00000264645	ENST00000427275		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CASC3	chr17	38297860	+	HNF1B	chr17	36047395	-
5CDS-5UTR	ENST00000299957	ENST00000337338		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
5CDS-5UTR	ENST00000299957	ENST00000394593		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
3UTR-5UTR	ENST00000360824	ENST00000337338		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
3UTR-5UTR	ENST00000360824	ENST00000394593		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
5CDS-5UTR	ENST00000345795	ENST00000337338		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
5CDS-5UTR	ENST00000345795	ENST00000394593		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
intron-5UTR	ENST00000429162	ENST00000337338		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
intron-5UTR	ENST00000429162	ENST00000394593		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CASC4	chr15	44630515	+	LRRC8D	chr1	90398626	+
intron-3CDS	ENST00000550385	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-3CDS	ENST00000550385	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-3CDS	ENST00000550385	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-3CDS	ENST00000550385	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-3CDS	ENST00000550385	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-3CDS	ENST00000550385	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-3CDS	ENST00000550385	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-5UTR	ENST00000550385	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
intron-intron	ENST00000550385	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000229266	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000229266	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-intron	ENST00000229266	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
In-frame	ENST00000549872	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-5UTR	ENST00000549872	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
5CDS-intron	ENST00000549872	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHPT1	chr12	102091912	+	TXNRD1	chr12	104707023	+
Frame-shit	ENST00000299543	ENST00000253506		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000591814		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000397790		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000587635		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000427363		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000542384		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000318065		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000545796		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000592223		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000329101		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000299543	ENST00000586434		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-3UTR	ENST00000299543	ENST00000590172		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
Frame-shit	ENST00000075430	ENST00000253506		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000591814		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000397790		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000587635		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000427363		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000542384		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000318065		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000545796		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000592223		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000329101		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000075430	ENST00000586434		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
5CDS-3UTR	ENST00000075430	ENST00000590172		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-3CDS	ENST00000587623	ENST00000253506		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000591814		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000397790		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000587635		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000427363		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000542384		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000318065		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000545796		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000592223		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000329101		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000587623	ENST00000586434		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
intron-3UTR	ENST00000587623	ENST00000590172		TCGA	RV	SARC	TCGA-X6-A7WA-01A	CTDP1	chr18	77475528	+	NFATC1	chr18	77287528	+
In-frame	ENST00000428559	ENST00000285381		TCGA	RV	SARC	TCGA-X6-A8C6-01A	DERA	chr12	16064348	+	CA3	chr8	86351941	+
In-frame	ENST00000532964	ENST00000285381		TCGA	RV	SARC	TCGA-X6-A8C6-01A	DERA	chr12	16064348	+	CA3	chr8	86351941	+
intron-3CDS	ENST00000526530	ENST00000285381		TCGA	RV	SARC	TCGA-X6-A8C6-01A	DERA	chr12	16064348	+	CA3	chr8	86351941	+
intron-3CDS	ENST00000532573	ENST00000285381		TCGA	RV	SARC	TCGA-X6-A8C6-01A	DERA	chr12	16064348	+	CA3	chr8	86351941	+
5CDS-5UTR	ENST00000344096	ENST00000331830		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DYRK2	chr12	68043725	+	CNTN2	chr1	205022228	+
intron-5UTR	ENST00000393555	ENST00000331830		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DYRK2	chr12	68043725	+	CNTN2	chr1	205022228	+
3UTR-5UTR	ENST00000537632	ENST00000331830		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DYRK2	chr12	68043725	+	CNTN2	chr1	205022228	+
In-frame	ENST00000228741	ENST00000261211		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
In-frame	ENST00000228741	ENST00000543119		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
In-frame	ENST00000228741	ENST00000542666		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
5CDS-5UTR	ENST00000228741	ENST00000553042		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
In-frame	ENST00000552142	ENST00000261211		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
In-frame	ENST00000552142	ENST00000543119		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
In-frame	ENST00000552142	ENST00000542666		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
5CDS-5UTR	ENST00000552142	ENST00000553042		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
intron-3CDS	ENST00000549529	ENST00000261211		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
intron-3CDS	ENST00000549529	ENST00000543119		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
intron-3CDS	ENST00000549529	ENST00000542666		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
intron-5UTR	ENST00000549529	ENST00000553042		TCGA	RV	SARC	TCGA-DX-A2J0-01A	ELK3	chr12	96617551	+	CDK17	chr12	96694138	-
Frame-shit	ENST00000343958	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
Frame-shit	ENST00000343958	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000343958	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000343958	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000343958	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000343958	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
Frame-shit	ENST00000546711	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
Frame-shit	ENST00000546711	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000546711	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000546711	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000546711	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
5CDS-5UTR	ENST00000546711	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-3CDS	ENST00000549499	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-3CDS	ENST00000549499	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549499	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549499	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549499	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549499	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-3CDS	ENST00000550368	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-3CDS	ENST00000550368	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000550368	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000550368	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000550368	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000550368	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB37-01A	FGD6	chr12	95483345	-	PTPRR	chr12	71033057	-
In-frame	ENST00000266754	ENST00000309680		TCGA	RV	SARC	TCGA-DX-A2J4-01A	GAS2L3	chr12	100995531	+	KRT2	chr12	53044337	-
In-frame	ENST00000547754	ENST00000309680		TCGA	RV	SARC	TCGA-DX-A2J4-01A	GAS2L3	chr12	100995531	+	KRT2	chr12	53044337	-
intron-3CDS	ENST00000547739	ENST00000309680		TCGA	RV	SARC	TCGA-DX-A2J4-01A	GAS2L3	chr12	100995531	+	KRT2	chr12	53044337	-
In-frame	ENST00000539410	ENST00000309680		TCGA	RV	SARC	TCGA-DX-A2J4-01A	GAS2L3	chr12	100995531	+	KRT2	chr12	53044337	-
5UTR-3CDS	ENST00000537247	ENST00000309680		TCGA	RV	SARC	TCGA-DX-A2J4-01A	GAS2L3	chr12	100995531	+	KRT2	chr12	53044337	-
Frame-shit	ENST00000395925	ENST00000373025		TCGA	RV	SARC	TCGA-DX-A23T-01A	GLI3	chr7	42187825	-	PGC	chr6	41704742	-
5CDS-intron	ENST00000395925	ENST00000425343		TCGA	RV	SARC	TCGA-DX-A23T-01A	GLI3	chr7	42187825	-	PGC	chr6	41704742	-
5UTR-3CDS	ENST00000479210	ENST00000373025		TCGA	RV	SARC	TCGA-DX-A23T-01A	GLI3	chr7	42187825	-	PGC	chr6	41704742	-
5UTR-intron	ENST00000479210	ENST00000425343		TCGA	RV	SARC	TCGA-DX-A23T-01A	GLI3	chr7	42187825	-	PGC	chr6	41704742	-
intron-3CDS	ENST00000437480	ENST00000373025		TCGA	RV	SARC	TCGA-DX-A23T-01A	GLI3	chr7	42187825	-	PGC	chr6	41704742	-
intron-intron	ENST00000437480	ENST00000425343		TCGA	RV	SARC	TCGA-DX-A23T-01A	GLI3	chr7	42187825	-	PGC	chr6	41704742	-
5CDS-intron	ENST00000299314	ENST00000536742		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000299314	ENST00000327554		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000299314	ENST00000539847		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000299314	ENST00000546345		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549940	ENST00000536742		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549940	ENST00000327554		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549940	ENST00000539847		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549940	ENST00000546345		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000392919	ENST00000536742		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000392919	ENST00000327554		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000392919	ENST00000539847		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000392919	ENST00000546345		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549165	ENST00000536742		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549165	ENST00000327554		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549165	ENST00000539847		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000549165	ENST00000546345		TCGA	RV	SARC	TCGA-DX-AB2O-01A	GNPTAB	chr12	102224337	-	CCDC60	chr12	119926564	+
In-frame	ENST00000392870	ENST00000534863		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000392870	ENST00000470751		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000392870	ENST00000272902		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000392870	ENST00000383843		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000392870	ENST00000458465		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000392870	ENST00000405420		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
In-frame	ENST00000369108	ENST00000534863		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000369108	ENST00000470751		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000369108	ENST00000272902		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000369108	ENST00000383843		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000369108	ENST00000458465		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
5CDS-intron	ENST00000369108	ENST00000405420		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
intron-3CDS	ENST00000473264	ENST00000534863		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000473264	ENST00000470751		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000473264	ENST00000272902		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000473264	ENST00000383843		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000473264	ENST00000458465		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
intron-intron	ENST00000473264	ENST00000405420		TCGA	RV	SARC	TCGA-DX-A48R-01A	GRK5	chr10	121191039	+	SUMF1	chr3	4110429	-
In-frame	ENST00000080059	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
In-frame	ENST00000080059	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
5CDS-intron	ENST00000080059	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
In-frame	ENST00000354334	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
In-frame	ENST00000354334	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
5CDS-intron	ENST00000354334	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
In-frame	ENST00000552960	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
In-frame	ENST00000552960	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
5CDS-intron	ENST00000552960	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000380610	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000380610	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-intron	ENST00000380610	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000427332	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000427332	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-intron	ENST00000427332	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000488927	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000488927	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
intron-intron	ENST00000488927	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	HDAC7	chr12	48213550	-	ACSS3	chr12	81528595	+
In-frame	ENST00000399353	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399353	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399353	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399353	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399353	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399353	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399353	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399353	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381318	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000381318	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381291	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000381291	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000381285	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000381285	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399367	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399367	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399352	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399352	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399355	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399355	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399349	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399349	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399338	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399338	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000379960	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000379960	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000437442	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000437442	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
In-frame	ENST00000399326	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
5CDS-intron	ENST00000399326	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000352456		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000595018		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000392006		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000378215		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000602130		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000593587		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-3CDS	ENST00000488166	ENST00000263367		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
3UTR-intron	ENST00000488166	ENST00000594207		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ITSN1	chr21	35127702	+	HNRNPUL1	chr19	41808570	+
Frame-shit	ENST00000361961	ENST00000410024		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000361961	ENST00000409295		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361961	ENST00000409091		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361961	ENST00000350033		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361961	ENST00000410017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361961	ENST00000373608		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000395670	ENST00000410024		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000395670	ENST00000409295		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000395670	ENST00000409091		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000395670	ENST00000350033		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000395670	ENST00000410017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000395670	ENST00000373608		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000544797	ENST00000410024		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000544797	ENST00000409295		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000544797	ENST00000409091		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000544797	ENST00000350033		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000544797	ENST00000410017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000544797	ENST00000373608		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000361418	ENST00000410024		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000361418	ENST00000409295		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361418	ENST00000409091		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361418	ENST00000350033		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361418	ENST00000410017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000361418	ENST00000373608		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000541463	ENST00000410024		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
Frame-shit	ENST00000541463	ENST00000409295		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000541463	ENST00000409091		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000541463	ENST00000350033		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000541463	ENST00000410017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5CDS-intron	ENST00000541463	ENST00000373608		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5UTR-3CDS	ENST00000547745	ENST00000410024		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5UTR-3CDS	ENST00000547745	ENST00000409295		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5UTR-intron	ENST00000547745	ENST00000409091		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5UTR-intron	ENST00000547745	ENST00000350033		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5UTR-intron	ENST00000547745	ENST00000410017		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
5UTR-intron	ENST00000547745	ENST00000373608		TCGA	RV	SARC	TCGA-3B-A9HL-01A	KIF21A	chr12	39713708	-	COPS7B	chr2	232656443	+
3UTR-3CDS	ENST00000435030	ENST00000409843		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000435030	ENST00000409830		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000410051		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000479019		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000409805		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000359135		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000409580		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000409637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000435030	ENST00000409609		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000414838	ENST00000409843		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000414838	ENST00000409830		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000410051		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000479019		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000409805		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000359135		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000409580		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000409637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000414838	ENST00000409609		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000464066	ENST00000409843		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000464066	ENST00000409830		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000410051		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000479019		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000409805		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000359135		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000409580		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000409637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000464066	ENST00000409609		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000397413	ENST00000409843		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-3CDS	ENST00000397413	ENST00000409830		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000410051		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000479019		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000409805		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000359135		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000409580		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000409637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
3UTR-intron	ENST00000397413	ENST00000409609		TCGA	RV	SARC	TCGA-DX-AB2O-01A	KIF5C	chr2	149868197	+	GULP1	chr2	189458667	+
Frame-shit	ENST00000355192	ENST00000243903		TCGA	RV	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65762806	+	ACTR5	chr20	37400202	+
Frame-shit	ENST00000308259	ENST00000243903		TCGA	RV	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65762806	+	ACTR5	chr20	37400202	+
Frame-shit	ENST00000540804	ENST00000243903		TCGA	RV	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65762806	+	ACTR5	chr20	37400202	+
Frame-shit	ENST00000535664	ENST00000243903		TCGA	RV	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65762806	+	ACTR5	chr20	37400202	+
intron-3CDS	ENST00000538725	ENST00000243903		TCGA	RV	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65762806	+	ACTR5	chr20	37400202	+
5CDS-intron	ENST00000309212	ENST00000216297		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000309212	ENST00000555943		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000342753	ENST00000216297		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000342753	ENST00000555943		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000445648	ENST00000216297		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000445648	ENST00000555943		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000477278	ENST00000216297		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000477278	ENST00000555943		TCGA	RV	SARC	TCGA-IE-A3OV-01A	MXRA8	chr1	1288072	-	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000275820	ENST00000356136		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000275820	ENST00000528420		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000275820	ENST00000533454		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000275820	ENST00000531818		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000275820	ENST00000532130		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000275820	ENST00000539288		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
5CDS-intron	ENST00000275820	ENST00000525872		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
5CDS-intron	ENST00000275820	ENST00000538870		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000460332	ENST00000356136		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000460332	ENST00000528420		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000460332	ENST00000533454		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000460332	ENST00000531818		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000460332	ENST00000532130		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000460332	ENST00000539288		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-intron	ENST00000460332	ENST00000525872		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
intron-intron	ENST00000460332	ENST00000538870		TCGA	RV	SARC	TCGA-JV-A75J-01A	NOM1	chr7	156743418	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000262302	ENST00000352681		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
Frame-shit	ENST00000262302	ENST00000219551		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
5UTR-3CDS	ENST00000565987	ENST00000352681		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
5UTR-3CDS	ENST00000565987	ENST00000219551		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
5UTR-3CDS	ENST00000543305	ENST00000352681		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
5UTR-3CDS	ENST00000543305	ENST00000219551		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
Frame-shit	ENST00000565134	ENST00000352681		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
Frame-shit	ENST00000565134	ENST00000219551		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
intron-3CDS	ENST00000568706	ENST00000352681		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
intron-3CDS	ENST00000568706	ENST00000219551		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
intron-3CDS	ENST00000568610	ENST00000352681		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
intron-3CDS	ENST00000568610	ENST00000219551		TCGA	RV	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHBDL1	chr16	726971	+
In-frame	ENST00000359568	ENST00000287437		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
In-frame	ENST00000359568	ENST00000522563		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
5CDS-5UTR	ENST00000359568	ENST00000517315		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
5CDS-intron	ENST00000359568	ENST00000521460		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
3UTR-3CDS	ENST00000480896	ENST00000287437		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
3UTR-3CDS	ENST00000480896	ENST00000522563		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
3UTR-5UTR	ENST00000480896	ENST00000517315		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
3UTR-intron	ENST00000480896	ENST00000521460		TCGA	RV	SARC	TCGA-JV-A75J-01A	PCNT	chr21	47771454	+	NSMCE2	chr8	126163413	+
Frame-shit	ENST00000258526	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
Frame-shit	ENST00000258526	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
Frame-shit	ENST00000547057	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
Frame-shit	ENST00000547057	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000551495	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000551495	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
Frame-shit	ENST00000545312	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
Frame-shit	ENST00000545312	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PLXNC1	chr12	94694833	+	INSR	chr19	7267907	-
Frame-shit	ENST00000601806	ENST00000263280		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
Frame-shit	ENST00000601806	ENST00000391910		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-5UTR	ENST00000601806	ENST00000539396		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-intron	ENST00000601806	ENST00000594357		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
In-frame	ENST00000291281	ENST00000263280		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
In-frame	ENST00000291281	ENST00000391910		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-5UTR	ENST00000291281	ENST00000539396		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-intron	ENST00000291281	ENST00000594357		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
In-frame	ENST00000433867	ENST00000263280		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
In-frame	ENST00000433867	ENST00000391910		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-5UTR	ENST00000433867	ENST00000539396		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-intron	ENST00000433867	ENST00000594357		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
Frame-shit	ENST00000600194	ENST00000263280		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
Frame-shit	ENST00000600194	ENST00000391910		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-5UTR	ENST00000600194	ENST00000539396		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-intron	ENST00000600194	ENST00000594357		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
Frame-shit	ENST00000595515	ENST00000263280		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
Frame-shit	ENST00000595515	ENST00000391910		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-5UTR	ENST00000595515	ENST00000539396		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-intron	ENST00000595515	ENST00000594357		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
intron-3CDS	ENST00000593492	ENST00000263280		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
intron-3CDS	ENST00000593492	ENST00000391910		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
intron-5UTR	ENST00000593492	ENST00000539396		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
intron-intron	ENST00000593492	ENST00000594357		TCGA	RV	SARC	TCGA-3B-A9HU-01A	PRKD2	chr19	47192794	-	STRN4	chr19	47242145	-
5CDS-intron	ENST00000283228	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000283228	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000283228	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000283228	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000283228	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000440835	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000440835	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000440835	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000440835	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000440835	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
intron-intron	ENST00000537619	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
intron-5UTR	ENST00000537619	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
intron-intron	ENST00000537619	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
intron-intron	ENST00000537619	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
intron-5UTR	ENST00000537619	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000378778	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000378778	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000378778	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000378778	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000378778	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000342084	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000342084	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000342084	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000342084	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000342084	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000549308	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000549308	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000549308	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-intron	ENST00000549308	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000549308	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A3LT-01A	PTPRR	chr12	71147971	-	SLC6A15	chr12	85286087	-
5CDS-5UTR	ENST00000261263	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RAB21	chr12	72167802	+	FRS2	chr12	69955960	+
5CDS-5UTR	ENST00000261263	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RAB21	chr12	72167802	+	FRS2	chr12	69955960	+
5CDS-5UTR	ENST00000261263	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RAB21	chr12	72167802	+	FRS2	chr12	69955960	+
5CDS-5UTR	ENST00000261263	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A1L0-01A	RAB21	chr12	72167802	+	FRS2	chr12	69955960	+
5CDS-intron	ENST00000247833	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000247833	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000378815	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5UTR-intron	ENST00000325555	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000483530	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000550536	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
5CDS-intron	ENST00000362025	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000551641	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000553099	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000331471		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000488961		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000330891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000553096		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000476098		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000266661		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000551160		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000393365		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
intron-intron	ENST00000550847	ENST00000533674		TCGA	RV	SARC	TCGA-DX-A6BF-01A	RAB3IP	chr12	70150443	+	BEST3	chr12	70078388	-
Frame-shit	ENST00000525754	ENST00000301838		TCGA	RV	SARC	TCGA-3B-A9HR-01A	RBM4B	chr11	66444139	-	FADD	chr11	70052239	+
Frame-shit	ENST00000310046	ENST00000301838		TCGA	RV	SARC	TCGA-3B-A9HR-01A	RBM4B	chr11	66444139	-	FADD	chr11	70052239	+
In-frame	ENST00000531969	ENST00000301838		TCGA	RV	SARC	TCGA-3B-A9HR-01A	RBM4B	chr11	66444139	-	FADD	chr11	70052239	+
intron-3CDS	ENST00000529195	ENST00000301838		TCGA	RV	SARC	TCGA-3B-A9HR-01A	RBM4B	chr11	66444139	-	FADD	chr11	70052239	+
Frame-shit	ENST00000524637	ENST00000301838		TCGA	RV	SARC	TCGA-3B-A9HR-01A	RBM4B	chr11	66444139	-	FADD	chr11	70052239	+
intron-3CDS	ENST00000531036	ENST00000301838		TCGA	RV	SARC	TCGA-3B-A9HR-01A	RBM4B	chr11	66444139	-	FADD	chr11	70052239	+
Frame-shit	ENST00000442092	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000442092	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000442092	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000442092	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000442092	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000442092	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000266022	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000266022	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000266022	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000266022	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000266022	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000266022	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000443081	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000443081	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000443081	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000443081	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000443081	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000443081	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000539992	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000539992	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000539992	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000539992	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000539992	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000539992	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
intron-3CDS	ENST00000441115	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
intron-3CDS	ENST00000441115	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
intron-intron	ENST00000441115	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
intron-intron	ENST00000441115	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
intron-intron	ENST00000441115	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
intron-intron	ENST00000441115	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000422955	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
Frame-shit	ENST00000422955	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000422955	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000422955	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000422955	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5CDS-intron	ENST00000422955	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5UTR-3CDS	ENST00000421682	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5UTR-3CDS	ENST00000421682	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5UTR-intron	ENST00000421682	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5UTR-intron	ENST00000421682	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5UTR-intron	ENST00000421682	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
5UTR-intron	ENST00000421682	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	RBM6	chr3	50106197	+	TTC7A	chr2	47287908	+
In-frame	ENST00000521654	ENST00000369408		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000521654	ENST00000520886		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000521654	ENST00000339746		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000521654	ENST00000447838		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000521654	ENST00000522441		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000521654	ENST00000485637		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000521654	ENST00000520793		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
In-frame	ENST00000560949	ENST00000369408		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000560949	ENST00000520886		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000560949	ENST00000339746		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000560949	ENST00000447838		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000560949	ENST00000522441		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000560949	ENST00000485637		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-intron	ENST00000560949	ENST00000520793		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-3CDS	ENST00000454842	ENST00000369408		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000454842	ENST00000520886		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000454842	ENST00000339746		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000454842	ENST00000447838		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000454842	ENST00000522441		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000454842	ENST00000485637		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000454842	ENST00000520793		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-3CDS	ENST00000368414	ENST00000369408		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000368414	ENST00000520886		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000368414	ENST00000339746		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000368414	ENST00000447838		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000368414	ENST00000522441		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000368414	ENST00000485637		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000368414	ENST00000520793		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-3CDS	ENST00000359704	ENST00000369408		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000359704	ENST00000520886		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000359704	ENST00000339746		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000359704	ENST00000447838		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000359704	ENST00000522441		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000359704	ENST00000485637		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000359704	ENST00000520793		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-3CDS	ENST00000275184	ENST00000369408		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000275184	ENST00000520886		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000275184	ENST00000339746		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000275184	ENST00000447838		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000275184	ENST00000522441		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000275184	ENST00000485637		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
intron-intron	ENST00000275184	ENST00000520793		TCGA	RV	SARC	TCGA-WK-A8XX-01A	RNF217	chr6	125284572	+	ANKRD6	chr6	90338831	+
5CDS-5UTR	ENST00000400358	ENST00000406955		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400358	ENST00000402321		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400358	ENST00000402369		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400358	ENST00000338911		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400358	ENST00000401975		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400358	ENST00000406361		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400358	ENST00000443111		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000406955		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000402321		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000402369		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000338911		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000401975		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000406361		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5CDS-5UTR	ENST00000400359	ENST00000443111		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000406955		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000402321		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000402369		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000338911		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000401975		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000406361		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
intron-5UTR	ENST00000470591	ENST00000443111		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SGSM1	chr22	25255807	+	GAL3ST1	chr22	30953388	-
5UTR-3CDS	ENST00000397942	ENST00000441310		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-3CDS	ENST00000397942	ENST00000418224		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-3CDS	ENST00000397942	ENST00000409823		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-intron	ENST00000397942	ENST00000421722		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-intron	ENST00000397942	ENST00000447232		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-intron	ENST00000397942	ENST00000432292		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-intron	ENST00000397942	ENST00000409985		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5UTR-intron	ENST00000397942	ENST00000374826		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-3CDS	ENST00000582322	ENST00000441310		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-3CDS	ENST00000582322	ENST00000418224		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-3CDS	ENST00000582322	ENST00000409823		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-intron	ENST00000582322	ENST00000421722		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-intron	ENST00000582322	ENST00000447232		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-intron	ENST00000582322	ENST00000432292		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-intron	ENST00000582322	ENST00000409985		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
intron-intron	ENST00000582322	ENST00000374826		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	SOCS6	chr18	67956326	+	PMS1	chr2	190738222	+
5CDS-intron	ENST00000546097	ENST00000367469		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000546097	ENST00000367467		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-3UTR	ENST00000546097	ENST00000470750		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000367481	ENST00000367469		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000367481	ENST00000367467		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-3UTR	ENST00000367481	ENST00000470750		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000367480	ENST00000367469		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000367480	ENST00000367467		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-3UTR	ENST00000367480	ENST00000470750		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000321680	ENST00000367469		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-intron	ENST00000321680	ENST00000367467		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5CDS-3UTR	ENST00000321680	ENST00000470750		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5UTR-intron	ENST00000179882	ENST00000367469		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5UTR-intron	ENST00000179882	ENST00000367467		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
5UTR-3UTR	ENST00000179882	ENST00000470750		TCGA	RV	SARC	TCGA-QC-A6FX-01A	STXBP5	chr6	147560406	+	SASH1	chr6	148789681	+
Frame-shit	ENST00000327158	ENST00000391411		TCGA	RV	SARC	TCGA-IE-A3OV-01A	TIMM22	chr17	902824	+	C17orf51	chr17	21438799	-
5CDS-5UTR	ENST00000327158	ENST00000535846		TCGA	RV	SARC	TCGA-IE-A3OV-01A	TIMM22	chr17	902824	+	C17orf51	chr17	21438799	-
5CDS-5UTR	ENST00000327158	ENST00000412778		TCGA	RV	SARC	TCGA-IE-A3OV-01A	TIMM22	chr17	902824	+	C17orf51	chr17	21438799	-
intron-intron	ENST00000378300	ENST00000322776		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378300	ENST00000532303		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378300	ENST00000529927		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378300	ENST00000415352		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378300	ENST00000526169		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378292	ENST00000322776		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378292	ENST00000532303		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378292	ENST00000529927		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378292	ENST00000415352		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000378292	ENST00000526169		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000329305	ENST00000322776		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000329305	ENST00000532303		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000329305	ENST00000529927		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000329305	ENST00000415352		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000329305	ENST00000526169		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000360958	ENST00000322776		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000360958	ENST00000532303		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000360958	ENST00000529927		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000360958	ENST00000415352		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000360958	ENST00000526169		TCGA	RV	SARC	TCGA-DX-A6B9-01A	TPM2	chr9	35682011	-	NDUFV1	chr11	67375697	+
Frame-shit	ENST00000279907	ENST00000005284		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	CACNG3	chr16	24372673	+
Frame-shit	ENST00000356828	ENST00000005284		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	CACNG3	chr16	24372673	+
intron-3CDS	ENST00000545232	ENST00000005284		TCGA	RV	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100536370	-	CACNG3	chr16	24372673	+
5CDS-5UTR	ENST00000414563	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000414563	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000414563	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000414563	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000414563	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000359775	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000359775	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000359775	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000359775	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000359775	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000341375	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000341375	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000341375	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000341375	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000341375	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ZDHHC14	chr6	157803298	+	TSPAN8	chr12	71676599	-
Frame-shit	ENST00000290974	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000290974	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000290974	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000290974	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000511071	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000511071	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000511071	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000511071	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000515312	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000515312	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000515312	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000515312	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000515169	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000515169	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000515169	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000515169	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000509171	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000509171	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000509171	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000509171	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000503000	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
Frame-shit	ENST00000503000	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000503000	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
5CDS-5UTR	ENST00000503000	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000508471	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000508471	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000508471	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000508471	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000505421	ENST00000324989		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-3CDS	ENST00000505421	ENST00000397890		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000505421	ENST00000511535		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
intron-5UTR	ENST00000505421	ENST00000512574		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZFYVE28	chr4	2420012	-	CRMP1	chr4	5858034	-
In-frame	ENST00000591793	ENST00000354293		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
5CDS-3UTR	ENST00000591793	ENST00000600199		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
5CDS-3UTR	ENST00000591793	ENST00000359032		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
3UTR-3CDS	ENST00000588518	ENST00000354293		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
3UTR-3UTR	ENST00000588518	ENST00000600199		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
3UTR-3UTR	ENST00000588518	ENST00000359032		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
In-frame	ENST00000434772	ENST00000354293		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
5CDS-3UTR	ENST00000434772	ENST00000600199		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
5CDS-3UTR	ENST00000434772	ENST00000359032		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
In-frame	ENST00000585552	ENST00000354293		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
5CDS-3UTR	ENST00000585552	ENST00000600199		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
5CDS-3UTR	ENST00000585552	ENST00000359032		TCGA	RV	SARC	TCGA-QQ-A8VF-01A	ZNF223	chr19	44559344	+	AP2A1	chr19	50298887	+
Frame-shit	ENST00000551109	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000551109	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000551109	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000551109	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000551109	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000551109	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000352268	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000352268	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000352268	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000352268	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000352268	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000352268	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000394313	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000394313	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000394313	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000394313	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000394313	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000394313	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000338010	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000338010	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000338010	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000338010	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000338010	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000338010	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000546970	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000546970	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000546970	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
Frame-shit	ENST00000546970	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000546970	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000546970	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
intron-3CDS	ENST00000552382	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
intron-3CDS	ENST00000552382	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
intron-3CDS	ENST00000552382	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
intron-3CDS	ENST00000552382	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
intron-intron	ENST00000552382	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
intron-intron	ENST00000552382	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000551771	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000551771	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000551771	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
In-frame	ENST00000551771	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000551771	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-intron	ENST00000551771	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	ZNF385A	chr12	54778212	-	NAV3	chr12	78552983	+
5CDS-5UTR	ENST00000457913	ENST00000317012		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ZNF462	chr9	109701388	+	ZBED2	chr3	111313913	-
5CDS-5UTR	ENST00000277225	ENST00000317012		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ZNF462	chr9	109701388	+	ZBED2	chr3	111313913	-
5CDS-5UTR	ENST00000441147	ENST00000317012		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ZNF462	chr9	109701388	+	ZBED2	chr3	111313913	-
5CDS-5UTR	ENST00000542028	ENST00000317012		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ZNF462	chr9	109701388	+	ZBED2	chr3	111313913	-
intron-5UTR	ENST00000497489	ENST00000317012		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ZNF462	chr9	109701388	+	ZBED2	chr3	111313913	-
In-frame	ENST00000317133	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000317133	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000317133	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000317133	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000317133	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375741	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375741	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375741	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375741	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375741	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375739	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375739	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375739	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375739	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375739	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000370623	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000370623	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000370623	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000370623	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000370623	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-3CDS	ENST00000544132	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-3CDS	ENST00000544132	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-3CDS	ENST00000544132	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-intron	ENST00000544132	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-intron	ENST00000544132	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000218789	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000218789	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000218789	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000218789	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000218789	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375736	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375736	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375736	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375736	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375736	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000426073	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000426073	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000426073	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000426073	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000426073	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375737	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375737	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375737	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375737	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375737	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375723	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375723	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000375723	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375723	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000375723	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000478679	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000478679	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
In-frame	ENST00000478679	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000478679	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
5CDS-intron	ENST00000478679	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-3CDS	ENST00000483189	ENST00000556553		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-3CDS	ENST00000483189	ENST00000393545		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-3CDS	ENST00000483189	ENST00000356583		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-intron	ENST00000483189	ENST00000554102		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
intron-intron	ENST00000483189	ENST00000045347		TCGA	RV	SARC	TCGA-SI-A71O-06A	ARHGEF7	chr13	111940790	+	SPATA7	chr14	88883055	+
Frame-shit	ENST00000373344	ENST00000336278		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
5CDS-3UTR	ENST00000373344	ENST00000528525		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
Frame-shit	ENST00000395603	ENST00000336278		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
5CDS-3UTR	ENST00000395603	ENST00000528525		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
5UTR-3CDS	ENST00000480283	ENST00000336278		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
5UTR-3UTR	ENST00000480283	ENST00000528525		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
Frame-shit	ENST00000373341	ENST00000336278		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
5CDS-3UTR	ENST00000373341	ENST00000528525		TCGA	RV	SARC	TCGA-VT-A80G-01A	ATRX	chrX	76953071	-	SNTB2	chr16	69304046	+
5CDS-5UTR	ENST00000341156	ENST00000261172		TCGA	RV	SARC	TCGA-WK-A8XO-01A	B4GALNT1	chr12	58025698	-	EPYC	chr12	91396355	-
5CDS-5UTR	ENST00000418555	ENST00000261172		TCGA	RV	SARC	TCGA-WK-A8XO-01A	B4GALNT1	chr12	58025698	-	EPYC	chr12	91396355	-
5CDS-5UTR	ENST00000449184	ENST00000261172		TCGA	RV	SARC	TCGA-WK-A8XO-01A	B4GALNT1	chr12	58025698	-	EPYC	chr12	91396355	-
5CDS-5UTR	ENST00000550764	ENST00000261172		TCGA	RV	SARC	TCGA-WK-A8XO-01A	B4GALNT1	chr12	58025698	-	EPYC	chr12	91396355	-
5CDS-5UTR	ENST00000552350	ENST00000261172		TCGA	RV	SARC	TCGA-WK-A8XO-01A	B4GALNT1	chr12	58025698	-	EPYC	chr12	91396355	-
5UTR-5UTR	ENST00000550943	ENST00000261172		TCGA	RV	SARC	TCGA-WK-A8XO-01A	B4GALNT1	chr12	58025698	-	EPYC	chr12	91396355	-
Frame-shit	ENST00000272298	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
Frame-shit	ENST00000272298	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5CDS-3UTR	ENST00000272298	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5CDS-3UTR	ENST00000272298	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5CDS-3UTR	ENST00000272298	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5CDS-intron	ENST00000272298	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3CDS	ENST00000409563	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3CDS	ENST00000409563	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3UTR	ENST00000409563	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3UTR	ENST00000409563	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3UTR	ENST00000409563	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-intron	ENST00000409563	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3CDS	ENST00000484408	ENST00000409245		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3CDS	ENST00000484408	ENST00000319190		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3UTR	ENST00000484408	ENST00000461601		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3UTR	ENST00000484408	ENST00000394850		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-3UTR	ENST00000484408	ENST00000263737		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
5UTR-intron	ENST00000484408	ENST00000536057		TCGA	RV	SARC	TCGA-K1-A3PO-01A	CALM2	chr2	47397873	-	TTC7A	chr2	47233061	+
intron-3CDS	ENST00000546079	ENST00000252485		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
intron-3CDS	ENST00000546079	ENST00000252483		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
intron-3CDS	ENST00000541297	ENST00000252485		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
intron-3CDS	ENST00000541297	ENST00000252483		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
Frame-shit	ENST00000337392	ENST00000252485		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
Frame-shit	ENST00000337392	ENST00000252483		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
intron-3CDS	ENST00000589158	ENST00000252485		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
intron-3CDS	ENST00000589158	ENST00000252483		TCGA	RV	SARC	TCGA-WP-A9GB-01A	CLPTM1	chr19	45458724	+	PVRL2	chr19	45368528	+
5CDS-intron	ENST00000323786	ENST00000537792		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000323786	ENST00000537465		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000323786	ENST00000237353		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000323786	ENST00000355636		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000323786	ENST00000543746		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000393612	ENST00000537792		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000393612	ENST00000537465		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-intron	ENST00000393612	ENST00000237353		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000393612	ENST00000355636		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
5CDS-5UTR	ENST00000393612	ENST00000543746		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000564653	ENST00000537792		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000564653	ENST00000537465		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
intron-intron	ENST00000564653	ENST00000237353		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
intron-5UTR	ENST00000564653	ENST00000355636		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
intron-5UTR	ENST00000564653	ENST00000543746		TCGA	RV	SARC	TCGA-WK-A8XS-01A	COG4	chr16	70546142	-	PMFBP1	chr16	72188358	-
intron-3CDS	ENST00000491671	ENST00000475243		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
intron-intron	ENST00000491671	ENST00000395802		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
intron-3UTR	ENST00000491671	ENST00000265619		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-3CDS	ENST00000216214	ENST00000475243		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-intron	ENST00000216214	ENST00000395802		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-3UTR	ENST00000216214	ENST00000265619		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-3CDS	ENST00000441876	ENST00000475243		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-intron	ENST00000441876	ENST00000395802		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-3UTR	ENST00000441876	ENST00000265619		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-3CDS	ENST00000405673	ENST00000475243		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-intron	ENST00000405673	ENST00000395802		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
5UTR-3UTR	ENST00000405673	ENST00000265619		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
intron-3CDS	ENST00000405548	ENST00000475243		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
intron-intron	ENST00000405548	ENST00000395802		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
intron-3UTR	ENST00000405548	ENST00000265619		TCGA	RV	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57014001	+
In-frame	ENST00000064778	ENST00000393946		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
In-frame	ENST00000064778	ENST00000525457		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
In-frame	ENST00000064778	ENST00000527043		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
5CDS-3UTR	ENST00000064778	ENST00000526281		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
intron-3CDS	ENST00000450446	ENST00000393946		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
intron-3CDS	ENST00000450446	ENST00000525457		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
intron-3CDS	ENST00000450446	ENST00000527043		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
intron-3UTR	ENST00000450446	ENST00000526281		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
In-frame	ENST00000356467	ENST00000393946		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
In-frame	ENST00000356467	ENST00000525457		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
In-frame	ENST00000356467	ENST00000527043		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
5CDS-3UTR	ENST00000356467	ENST00000526281		TCGA	RV	SARC	TCGA-HS-A5N8-01A	FAM168A	chr11	73122439	-	SYT12	chr11	66807282	+
Frame-shit	ENST00000583610	ENST00000261721		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
In-frame	ENST00000583610	ENST00000379403		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
5CDS-intron	ENST00000583610	ENST00000560015		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
In-frame	ENST00000394294	ENST00000261721		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
Frame-shit	ENST00000394294	ENST00000379403		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
5CDS-intron	ENST00000394294	ENST00000560015		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
In-frame	ENST00000264658	ENST00000261721		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
Frame-shit	ENST00000264658	ENST00000379403		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
5CDS-intron	ENST00000264658	ENST00000560015		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
In-frame	ENST00000577399	ENST00000261721		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
Frame-shit	ENST00000577399	ENST00000379403		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
5CDS-intron	ENST00000577399	ENST00000560015		TCGA	RV	SARC	TCGA-FX-A3TO-01A	FBXL20	chr17	37499433	-	BTBD1	chr15	83725297	-
3UTR-3CDS	ENST00000474476	ENST00000357681		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
3UTR-3CDS	ENST00000474476	ENST00000391954		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
3UTR-3CDS	ENST00000474476	ENST00000367218		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
3UTR-3CDS	ENST00000474476	ENST00000367219		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
3UTR-3CDS	ENST00000474476	ENST00000341360		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
3UTR-intron	ENST00000474476	ENST00000466407		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371218	ENST00000357681		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371218	ENST00000391954		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371218	ENST00000367218		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371218	ENST00000367219		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371218	ENST00000341360		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
5CDS-intron	ENST00000371218	ENST00000466407		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000303721	ENST00000357681		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000303721	ENST00000391954		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000303721	ENST00000367218		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000303721	ENST00000367219		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000303721	ENST00000341360		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
5CDS-intron	ENST00000303721	ENST00000466407		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371212	ENST00000357681		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371212	ENST00000391954		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371212	ENST00000367218		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371212	ENST00000367219		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000371212	ENST00000341360		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
5CDS-intron	ENST00000371212	ENST00000466407		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
intron-3CDS	ENST00000371210	ENST00000357681		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
intron-3CDS	ENST00000371210	ENST00000391954		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
intron-3CDS	ENST00000371210	ENST00000367218		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
intron-3CDS	ENST00000371210	ENST00000367219		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
intron-3CDS	ENST00000371210	ENST00000341360		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
intron-intron	ENST00000371210	ENST00000466407		TCGA	RV	SARC	TCGA-DX-A23U-01A	FGGY	chr1	59922748	+	ATP2B4	chr1	203676990	+
Frame-shit	ENST00000295633	ENST00000264193		TCGA	RV	SARC	TCGA-PC-A5DM-01A	FSTL1	chr3	120128379	-	CPOX	chr3	98304503	-
Frame-shit	ENST00000424703	ENST00000264193		TCGA	RV	SARC	TCGA-PC-A5DM-01A	FSTL1	chr3	120128379	-	CPOX	chr3	98304503	-
intron-3CDS	ENST00000485968	ENST00000264193		TCGA	RV	SARC	TCGA-PC-A5DM-01A	FSTL1	chr3	120128379	-	CPOX	chr3	98304503	-
Frame-shit	ENST00000398016	ENST00000261234		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
5CDS-intron	ENST00000398016	ENST00000537982		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
5CDS-5UTR	ENST00000398016	ENST00000537373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
Frame-shit	ENST00000359742	ENST00000261234		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
5CDS-intron	ENST00000359742	ENST00000537982		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
5CDS-5UTR	ENST00000359742	ENST00000537373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
Frame-shit	ENST00000286445	ENST00000261234		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
5CDS-intron	ENST00000286445	ENST00000537982		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
5CDS-5UTR	ENST00000286445	ENST00000537373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
intron-3CDS	ENST00000542021	ENST00000261234		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
intron-intron	ENST00000542021	ENST00000537982		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
intron-5UTR	ENST00000542021	ENST00000537373		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIP1	chr12	66990627	-	TMEM5	chr12	64199014	+
Frame-shit	ENST00000361719	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000361719	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000361719	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000361719	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000392299	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000392299	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000392299	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000392299	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000492807	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000492807	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000492807	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000492807	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000355289	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000355289	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000355289	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000355289	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000282753	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000282753	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000282753	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000282753	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000507907	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
Frame-shit	ENST00000507907	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000507907	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000507907	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A3U5-01A	GRM1	chr6	146720835	+	CNOT2	chr12	70713078	+
5CDS-intron	ENST00000297440	ENST00000492698		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000297440	ENST00000252999		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000297440	ENST00000370692		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000297440	ENST00000370677		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000313147	ENST00000492698		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000313147	ENST00000252999		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000313147	ENST00000370692		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5CDS-intron	ENST00000313147	ENST00000370677		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
3UTR-intron	ENST00000438961	ENST00000492698		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
3UTR-intron	ENST00000438961	ENST00000252999		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
3UTR-intron	ENST00000438961	ENST00000370692		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
3UTR-intron	ENST00000438961	ENST00000370677		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
intron-intron	ENST00000403952	ENST00000492698		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
intron-intron	ENST00000403952	ENST00000252999		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
intron-intron	ENST00000403952	ENST00000370692		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
intron-intron	ENST00000403952	ENST00000370677		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	HEATR2	chr7	769484	+	LAMA5	chr20	60886150	-
5UTR-3CDS	ENST00000367604	ENST00000354570		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367604	ENST00000454590		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367604	ENST00000544465		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367604	ENST00000438100		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000367604	ENST00000432797		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367603	ENST00000354570		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367603	ENST00000454590		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367603	ENST00000544465		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000367603	ENST00000438100		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000367603	ENST00000432797		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000012134	ENST00000354570		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000012134	ENST00000454590		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000012134	ENST00000544465		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000012134	ENST00000438100		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000012134	ENST00000432797		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000474532	ENST00000354570		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000474532	ENST00000454590		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000474532	ENST00000544465		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-3CDS	ENST00000474532	ENST00000438100		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
5UTR-5UTR	ENST00000474532	ENST00000432797		TCGA	RV	SARC	TCGA-DX-A48N-01A	HIVEP2	chr6	143158072	-	MAP7	chr6	136742937	-
In-frame	ENST00000338564	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000338564	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000338564	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000561208	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000561208	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000561208	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000397624	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000397624	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000397624	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000382766	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000382766	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000382766	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000444725	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000444725	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000444725	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000340545	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000340545	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000340545	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000559085	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000559085	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000559085	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000219869	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000219869	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000219869	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000557796	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000557796	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000557796	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000397620	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000397620	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000397620	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000424352	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000424352	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
In-frame	ENST00000424352	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000559561	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000559561	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
Frame-shit	ENST00000559561	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
intron-3CDS	ENST00000559408	ENST00000568104		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
intron-3CDS	ENST00000559408	ENST00000245157		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
intron-3CDS	ENST00000559408	ENST00000561951		TCGA	RV	SARC	TCGA-WP-A9GB-01A	MEIS2	chr15	37242525	-	BBS2	chr16	56545196	-
5CDS-5UTR	ENST00000319080	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000319080	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000319080	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000319080	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
5CDS-intron	ENST00000319080	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000538698	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000538698	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000538698	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000538698	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000538698	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000377037	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000377037	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000377037	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000377037	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000377037	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-5UTR	ENST00000535996	ENST00000393330		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000535996	ENST00000247829		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000535996	ENST00000546561		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000535996	ENST00000552128		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-intron	ENST00000535996	ENST00000552786		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71835367	-
intron-3CDS	ENST00000550187	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-5UTR	ENST00000550187	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-5UTR	ENST00000550187	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-intron	ENST00000550187	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-3CDS	ENST00000547157	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-5UTR	ENST00000547157	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-5UTR	ENST00000547157	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
intron-intron	ENST00000547157	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
Frame-shit	ENST00000327772	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000327772	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000327772	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
5CDS-intron	ENST00000327772	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
Frame-shit	ENST00000547986	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000547986	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000547986	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
5CDS-intron	ENST00000547986	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95396515	-	NUP107	chr12	69082742	+
Frame-shit	ENST00000367993	ENST00000341998		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
5CDS-intron	ENST00000367993	ENST00000286344		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
Frame-shit	ENST00000392179	ENST00000341998		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
5CDS-intron	ENST00000392179	ENST00000286344		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
5UTR-3CDS	ENST00000476409	ENST00000341998		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
5UTR-intron	ENST00000476409	ENST00000286344		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
intron-3CDS	ENST00000465923	ENST00000341998		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
intron-intron	ENST00000465923	ENST00000286344		TCGA	RV	SARC	TCGA-FX-A2QS-01A	NDUFS2	chr1	161172270	+	SLC24A2	chr9	19597277	-
In-frame	ENST00000380060	ENST00000368026		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
5CDS-3UTR	ENST00000380060	ENST00000289779		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
5CDS-3UTR	ENST00000380060	ENST00000537746		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
5CDS-intron	ENST00000380060	ENST00000472573		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-3CDS	ENST00000398097	ENST00000368026		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-3UTR	ENST00000398097	ENST00000289779		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-3UTR	ENST00000398097	ENST00000537746		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-intron	ENST00000398097	ENST00000472573		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-3CDS	ENST00000485305	ENST00000368026		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-3UTR	ENST00000485305	ENST00000289779		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-3UTR	ENST00000485305	ENST00000537746		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
intron-intron	ENST00000485305	ENST00000472573		TCGA	RV	SARC	TCGA-DX-A240-01A	NHS	chrX	17394445	+	F11R	chr1	160971143	-
5UTR-3CDS	ENST00000318948	ENST00000400454		TCGA	RV	SARC	TCGA-DX-A6YR-01A	NRIP1	chr21	16386665	-	DSCAM	chr21	41455933	-
intron-3CDS	ENST00000400199	ENST00000400454		TCGA	RV	SARC	TCGA-DX-A6YR-01A	NRIP1	chr21	16386665	-	DSCAM	chr21	41455933	-
5UTR-3CDS	ENST00000400202	ENST00000400454		TCGA	RV	SARC	TCGA-DX-A6YR-01A	NRIP1	chr21	16386665	-	DSCAM	chr21	41455933	-
In-frame	ENST00000374791	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374791	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374791	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374791	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374791	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374791	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374791	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374791	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374791	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000539799	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000539799	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000539799	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000539799	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000539799	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000539799	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000539799	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000539799	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000539799	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000427481	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000427481	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000427481	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000427481	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000427481	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000427481	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000427481	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000427481	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000427481	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374786	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374786	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374786	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374786	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374786	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374786	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374786	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374786	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374786	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000425719	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000425719	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000425719	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000425719	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000425719	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000425719	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000425719	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000425719	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000425719	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374784	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374784	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374784	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374784	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374784	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
In-frame	ENST00000374784	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374784	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374784	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
5CDS-intron	ENST00000374784	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-3CDS	ENST00000474900	ENST00000466387		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-3CDS	ENST00000474900	ENST00000496558		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-3CDS	ENST00000474900	ENST00000361291		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-3CDS	ENST00000474900	ENST00000402739		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-3CDS	ENST00000474900	ENST00000540488		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-3CDS	ENST00000474900	ENST00000541047		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-intron	ENST00000474900	ENST00000343114		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-intron	ENST00000474900	ENST00000496251		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
3UTR-intron	ENST00000474900	ENST00000409266		TCGA	RV	SARC	TCGA-SI-A71O-01A	NTM	chr11	132082041	+	CTNNA2	chr2	80085139	+
Frame-shit	ENST00000372862	ENST00000545844		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000567887		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000372915		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000361689		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000539005		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000317713		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000564288		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372862	ENST00000289893		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372862	ENST00000536367		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372862	ENST00000484793		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372862	ENST00000602421		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372862	ENST00000476350		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000545844		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000567887		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000372915		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000361689		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000539005		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000317713		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000564288		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372858	ENST00000289893		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372858	ENST00000536367		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372858	ENST00000484793		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372858	ENST00000602421		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372858	ENST00000476350		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000545844		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000567887		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000372915		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000361689		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000539005		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000317713		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000564288		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372857	ENST00000289893		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372857	ENST00000536367		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372857	ENST00000484793		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372857	ENST00000602421		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372857	ENST00000476350		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000545844		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000567887		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000372915		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000361689		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000539005		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000317713		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000564288		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
Frame-shit	ENST00000372856	ENST00000289893		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372856	ENST00000536367		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372856	ENST00000484793		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372856	ENST00000602421		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
5CDS-intron	ENST00000372856	ENST00000476350		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000545844		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000567887		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000372915		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000361689		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000539005		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000317713		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000564288		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000529216	ENST00000289893		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-intron	ENST00000529216	ENST00000536367		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-intron	ENST00000529216	ENST00000484793		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-intron	ENST00000529216	ENST00000602421		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-intron	ENST00000529216	ENST00000476350		TCGA	RV	SARC	TCGA-DX-A48U-01A	PABPC4	chr1	40034474	-	MACF1	chr1	39916724	+
intron-3CDS	ENST00000431992	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000431992	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000431992	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000373422	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000373422	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373422	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000257118	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000257118	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000257118	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000419414	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000419414	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000419414	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000373416	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-3CDS	ENST00000373416	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
intron-intron	ENST00000373416	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-3CDS	ENST00000485928	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-3CDS	ENST00000485928	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000485928	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-3CDS	ENST00000373418	ENST00000586622		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-3CDS	ENST00000373418	ENST00000588460		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000591864		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000590393		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000593181		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000355954		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000336509		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000590514		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
5UTR-intron	ENST00000373418	ENST00000590070		TCGA	RV	SARC	TCGA-DX-A6YV-01A	PHC2	chr1	33815198	-	MFSD11	chr17	74763468	+
Frame-shit	ENST00000345136	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000345136	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000357649	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000357649	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000354589	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000354589	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000398774	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000398774	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000322810	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000322810	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000354958	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000354958	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000356346	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000356346	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
In-frame	ENST00000436759	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000436759	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
Frame-shit	ENST00000527096	ENST00000342232		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
5CDS-intron	ENST00000527096	ENST00000518195		TCGA	RV	SARC	TCGA-DX-AB2E-01A	PLEC	chr8	145012319	-	JPH1	chr8	75171738	-
intron-3CDS	ENST00000413953	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000413953	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000413953	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000413953	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-intron	ENST00000413953	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000347140	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000347140	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000347140	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000347140	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-intron	ENST00000347140	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000358907	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000358907	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000358907	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000358907	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-intron	ENST00000358907	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000402412	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000402412	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000402412	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-3CDS	ENST00000402412	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
5UTR-intron	ENST00000402412	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000441731	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000441731	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000441731	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000441731	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-intron	ENST00000441731	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000403821	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000403821	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000403821	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000403821	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-intron	ENST00000403821	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000546843	ENST00000343702		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000546843	ENST00000344911		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000546843	ENST00000538383		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-3CDS	ENST00000546843	ENST00000553059		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
intron-intron	ENST00000546843	ENST00000552603		TCGA	RV	SARC	TCGA-X6-A8C6-01A	R3HDM2	chr12	57789532	-	NTN4	chr12	96077487	-
Frame-shit	ENST00000261263	ENST00000547405		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
Frame-shit	ENST00000261263	ENST00000452455		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
Frame-shit	ENST00000261263	ENST00000360610		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
Frame-shit	ENST00000261263	ENST00000441232		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
Frame-shit	ENST00000261263	ENST00000392934		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
Frame-shit	ENST00000261263	ENST00000547509		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
Frame-shit	ENST00000261263	ENST00000361685		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000550501		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000549145		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000553190		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000536007		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000541119		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000545503		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-intron	ENST00000261263	ENST00000361466		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-5UTR	ENST00000261263	ENST00000551300		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
5CDS-5UTR	ENST00000261263	ENST00000550270		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102023212	+
In-frame	ENST00000357277	ENST00000443437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000357277	ENST00000218075		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000357277	ENST00000355020		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000303843	ENST00000443437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000303843	ENST00000218075		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000303843	ENST00000355020		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000380064	ENST00000443437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000380064	ENST00000218075		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
In-frame	ENST00000380064	ENST00000355020		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
3UTR-3CDS	ENST00000469714	ENST00000443437		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
3UTR-3CDS	ENST00000469714	ENST00000218075		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
3UTR-3CDS	ENST00000469714	ENST00000355020		TCGA	RV	SARC	TCGA-X6-A8C6-01A	REPS2	chrX	17121902	+	GLRA2	chrX	14708832	+
5CDS-5UTR	ENST00000336735	ENST00000542227		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
5CDS-5UTR	ENST00000336735	ENST00000447296		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
5CDS-intron	ENST00000336735	ENST00000246166		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
5CDS-intron	ENST00000336735	ENST00000555742		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
intron-5UTR	ENST00000555824	ENST00000542227		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
intron-5UTR	ENST00000555824	ENST00000447296		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
intron-intron	ENST00000555824	ENST00000246166		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
intron-intron	ENST00000555824	ENST00000555742		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	FNTB	chr14	65390709	+
In-frame	ENST00000519560	ENST00000381340		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5CDS-intron	ENST00000519560	ENST00000545902		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5CDS-intron	ENST00000519560	ENST00000242737		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
In-frame	ENST00000332966	ENST00000381340		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5CDS-intron	ENST00000332966	ENST00000545902		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5CDS-intron	ENST00000332966	ENST00000242737		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
In-frame	ENST00000404867	ENST00000381340		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5CDS-intron	ENST00000404867	ENST00000545902		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5CDS-intron	ENST00000404867	ENST00000242737		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5UTR-3CDS	ENST00000521130	ENST00000381340		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5UTR-intron	ENST00000521130	ENST00000545902		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5UTR-intron	ENST00000521130	ENST00000242737		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	SLIT3	chr5	168620483	-	ITPR2	chr12	26943160	-
5UTR-3CDS	ENST00000393240	ENST00000331710		TCGA	RV	SARC	TCGA-DX-AB35-01A	SYT1	chr12	79441142	+	TBK1	chr12	64889263	+
5UTR-3CDS	ENST00000261205	ENST00000331710		TCGA	RV	SARC	TCGA-DX-AB35-01A	SYT1	chr12	79441142	+	TBK1	chr12	64889263	+
intron-3CDS	ENST00000457153	ENST00000331710		TCGA	RV	SARC	TCGA-DX-AB35-01A	SYT1	chr12	79441142	+	TBK1	chr12	64889263	+
5UTR-3CDS	ENST00000552744	ENST00000331710		TCGA	RV	SARC	TCGA-DX-AB35-01A	SYT1	chr12	79441142	+	TBK1	chr12	64889263	+
3UTR-3CDS	ENST00000549454	ENST00000331710		TCGA	RV	SARC	TCGA-DX-AB35-01A	SYT1	chr12	79441142	+	TBK1	chr12	64889263	+
intron-3CDS	ENST00000207157	ENST00000319653		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
intron-intron	ENST00000207157	ENST00000545751		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
intron-intron	ENST00000207157	ENST00000543681		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
intron-intron	ENST00000207157	ENST00000496950		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
In-frame	ENST00000369429	ENST00000319653		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
5CDS-intron	ENST00000369429	ENST00000545751		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
5CDS-intron	ENST00000369429	ENST00000543681		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
5CDS-intron	ENST00000369429	ENST00000496950		TCGA	RV	SARC	TCGA-DX-A2J0-01A	TBX15	chr1	119530214	-	FMN2	chr1	240421245	+
In-frame	ENST00000361905	ENST00000379554		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361905	ENST00000424273		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361905	ENST00000379556		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361905	ENST00000528567		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361905	ENST00000525218		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361905	ENST00000530161		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361905	ENST00000447214		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
In-frame	ENST00000527636	ENST00000379554		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527636	ENST00000424273		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527636	ENST00000379556		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527636	ENST00000528567		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527636	ENST00000525218		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527636	ENST00000530161		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527636	ENST00000447214		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
In-frame	ENST00000527575	ENST00000379554		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527575	ENST00000424273		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527575	ENST00000379556		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527575	ENST00000528567		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527575	ENST00000525218		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527575	ENST00000530161		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000527575	ENST00000447214		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
In-frame	ENST00000334310	ENST00000379554		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000334310	ENST00000424273		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000334310	ENST00000379556		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000334310	ENST00000528567		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000334310	ENST00000525218		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000334310	ENST00000530161		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000334310	ENST00000447214		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
In-frame	ENST00000361985	ENST00000379554		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361985	ENST00000424273		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361985	ENST00000379556		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361985	ENST00000528567		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361985	ENST00000525218		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361985	ENST00000530161		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000361985	ENST00000447214		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
In-frame	ENST00000526600	ENST00000379554		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000526600	ENST00000424273		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000526600	ENST00000379556		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000526600	ENST00000528567		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000526600	ENST00000525218		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000526600	ENST00000530161		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-intron	ENST00000526600	ENST00000447214		TCGA	RV	SARC	TCGA-FX-A3TO-01A	TEAD1	chr11	12904672	+	INSC	chr11	15222370	+
5CDS-5UTR	ENST00000261600	ENST00000395925		TCGA	RV	SARC	TCGA-K1-A42X-01A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
5CDS-intron	ENST00000261600	ENST00000479210		TCGA	RV	SARC	TCGA-K1-A42X-01A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
5CDS-5UTR	ENST00000261600	ENST00000437480		TCGA	RV	SARC	TCGA-K1-A42X-01A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
intron-5UTR	ENST00000582313	ENST00000395925		TCGA	RV	SARC	TCGA-K1-A42X-01A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
intron-intron	ENST00000582313	ENST00000479210		TCGA	RV	SARC	TCGA-K1-A42X-01A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
intron-5UTR	ENST00000582313	ENST00000437480		TCGA	RV	SARC	TCGA-K1-A42X-01A	THOC1	chr18	223440	-	GLI3	chr7	42262894	-
5CDS-3UTR	ENST00000266712	ENST00000548757		TCGA	RV	SARC	TCGA-DX-A6BF-01A	TMTC3	chr12	88570096	+	C12orf29	chr12	88433925	+
5CDS-3UTR	ENST00000266712	ENST00000356891		TCGA	RV	SARC	TCGA-DX-A6BF-01A	TMTC3	chr12	88570096	+	C12orf29	chr12	88433925	+
Frame-shit	ENST00000348165	ENST00000389413		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000348165	ENST00000409483		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000348165	ENST00000389416		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000348165	ENST00000389418		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000348165	ENST00000404321		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000389103	ENST00000389413		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000389103	ENST00000409483		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000389103	ENST00000389416		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000389103	ENST00000389418		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
Frame-shit	ENST00000389103	ENST00000404321		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	UBE3C	chr7	156932032	+	PTPRN2	chr7	157931207	-
In-frame	ENST00000367545	ENST00000403681		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367545	ENST00000541363		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367545	ENST00000393577		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367545	ENST00000393578		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367545	ENST00000425208		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367545	ENST00000536545		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367545	ENST00000354636		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000403681		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000541363		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000393577		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000393578		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000425208		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000536545		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
In-frame	ENST00000367526	ENST00000354636		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000403681		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000541363		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000393577		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000393578		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000425208		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000536545		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000480333	ENST00000354636		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	UTRN	chr6	145021379	+	HMGA2	chr12	66232299	+
5CDS-3UTR	ENST00000211998	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000211998	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000211998	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372755	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372755	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372755	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
3UTR-3UTR	ENST00000478896	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
3UTR-3UTR	ENST00000478896	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
3UTR-3UTR	ENST00000478896	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000417648	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000417648	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000417648	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A3UD-01A	VCL	chr10	75860855	+	C10orf11	chr10	78316967	+
intron-3CDS	ENST00000456324	ENST00000340001		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-3CDS	ENST00000456324	ENST00000453985		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-3CDS	ENST00000456324	ENST00000370732		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-intron	ENST00000456324	ENST00000482072		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-intron	ENST00000456324	ENST00000495634		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-3CDS	ENST00000586094	ENST00000340001		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-3CDS	ENST00000586094	ENST00000453985		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-3CDS	ENST00000586094	ENST00000370732		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-intron	ENST00000586094	ENST00000482072		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
intron-intron	ENST00000586094	ENST00000495634		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
5UTR-3CDS	ENST00000443387	ENST00000340001		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
5UTR-3CDS	ENST00000443387	ENST00000453985		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
5UTR-3CDS	ENST00000443387	ENST00000370732		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
5UTR-intron	ENST00000443387	ENST00000482072		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
5UTR-intron	ENST00000443387	ENST00000495634		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF146	chr19	36709097	+	ABCA9	chr17	66992155	-
In-frame	ENST00000340001	ENST00000424789		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
In-frame	ENST00000340001	ENST00000389520		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
In-frame	ENST00000453985	ENST00000424789		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
In-frame	ENST00000453985	ENST00000389520		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
3UTR-3CDS	ENST00000370732	ENST00000424789		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
3UTR-3CDS	ENST00000370732	ENST00000389520		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000482072	ENST00000424789		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000482072	ENST00000389520		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000495634	ENST00000424789		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
intron-3CDS	ENST00000495634	ENST00000389520		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ABCA9	chr17	66978703	-	TANC2	chr17	61345109	+
Frame-shit	ENST00000548058	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81545875	+	INSR	chr19	7143101	-
Frame-shit	ENST00000548058	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81545875	+	INSR	chr19	7143101	-
Frame-shit	ENST00000261206	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81545875	+	INSR	chr19	7143101	-
Frame-shit	ENST00000261206	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81545875	+	INSR	chr19	7143101	-
Frame-shit	ENST00000548324	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81545875	+	INSR	chr19	7143101	-
Frame-shit	ENST00000548324	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81545875	+	INSR	chr19	7143101	-
Frame-shit	ENST00000225737	ENST00000225245		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AKAP10	chr17	19880905	-	CCL3	chr17	34416643	-
Frame-shit	ENST00000395536	ENST00000225245		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AKAP10	chr17	19880905	-	CCL3	chr17	34416643	-
intron-3CDS	ENST00000572155	ENST00000225245		TCGA	RV	SARC	TCGA-FX-A3TO-01A	AKAP10	chr17	19880905	-	CCL3	chr17	34416643	-
In-frame	ENST00000538618	ENST00000311915		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
In-frame	ENST00000538618	ENST00000544871		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
In-frame	ENST00000538618	ENST00000398055		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
5CDS-intron	ENST00000538618	ENST00000540673		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000392979	ENST00000311915		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000392979	ENST00000544871		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000392979	ENST00000398055		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-intron	ENST00000392979	ENST00000540673		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000299222	ENST00000311915		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000299222	ENST00000544871		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000299222	ENST00000398055		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-intron	ENST00000299222	ENST00000540673		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000392977	ENST00000311915		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000392977	ENST00000544871		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000392977	ENST00000398055		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-intron	ENST00000392977	ENST00000540673		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000550015	ENST00000311915		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000550015	ENST00000544871		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000550015	ENST00000398055		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-intron	ENST00000550015	ENST00000540673		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000551148	ENST00000311915		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000551148	ENST00000544871		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-3CDS	ENST00000551148	ENST00000398055		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
intron-intron	ENST00000551148	ENST00000540673		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ANO4	chr12	101111325	+	C12orf66	chr12	64609743	-
5CDS-intron	ENST00000582520	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000582520	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000582520	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000582520	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000269321	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000269321	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000269321	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000269321	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000400721	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000400721	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000400721	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000400721	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000584461	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000584461	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000584461	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000584461	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000541078	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000541078	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000541078	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000541078	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000580685	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000580685	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000580685	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000580685	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000581876	ENST00000388922		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000581876	ENST00000550683		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000581876	ENST00000419526		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000581876	ENST00000550084		TCGA	RV	SARC	TCGA-DX-A3LY-01B	ARHGDIA	chr17	79825598	-	ACVRL1	chr12	52306155	+
In-frame	ENST00000334344	ENST00000451516		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
In-frame	ENST00000334344	ENST00000334414		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
In-frame	ENST00000334344	ENST00000550358		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
In-frame	ENST00000334344	ENST00000538708		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
In-frame	ENST00000334344	ENST00000550857		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
In-frame	ENST00000334344	ENST00000261266		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5CDS-intron	ENST00000334344	ENST00000551525		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5CDS-intron	ENST00000334344	ENST00000538174		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-3CDS	ENST00000422737	ENST00000451516		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-3CDS	ENST00000422737	ENST00000334414		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-3CDS	ENST00000422737	ENST00000550358		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-3CDS	ENST00000422737	ENST00000538708		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-3CDS	ENST00000422737	ENST00000550857		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-3CDS	ENST00000422737	ENST00000261266		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-intron	ENST00000422737	ENST00000551525		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
5UTR-intron	ENST00000422737	ENST00000538174		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000479608	ENST00000451516		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000479608	ENST00000334414		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000479608	ENST00000550358		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000479608	ENST00000538708		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000479608	ENST00000550857		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000479608	ENST00000261266		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-intron	ENST00000479608	ENST00000551525		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-intron	ENST00000479608	ENST00000538174		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000444670	ENST00000451516		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000444670	ENST00000334414		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000444670	ENST00000550358		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000444670	ENST00000538708		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000444670	ENST00000550857		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000444670	ENST00000261266		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-intron	ENST00000444670	ENST00000551525		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-intron	ENST00000444670	ENST00000538174		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000457135	ENST00000451516		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000457135	ENST00000334414		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000457135	ENST00000550358		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000457135	ENST00000538708		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000457135	ENST00000550857		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-3CDS	ENST00000457135	ENST00000261266		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-intron	ENST00000457135	ENST00000551525		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
intron-intron	ENST00000457135	ENST00000538174		TCGA	RV	SARC	TCGA-DX-A6BE-01A	ARID2	chr12	46125097	+	PTPRB	chr12	70933802	-
Frame-shit	ENST00000420843	ENST00000368037		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
Frame-shit	ENST00000420843	ENST00000392203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000420843	ENST00000368040		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000420843	ENST00000341032		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000420843	ENST00000368041		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000420843	ENST00000263285		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-intron	ENST00000420843	ENST00000368039		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-3UTR	ENST00000420843	ENST00000471816		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
Frame-shit	ENST00000393505	ENST00000368037		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
Frame-shit	ENST00000393505	ENST00000392203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000393505	ENST00000368040		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000393505	ENST00000341032		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000393505	ENST00000368041		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000393505	ENST00000263285		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-intron	ENST00000393505	ENST00000368039		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-3UTR	ENST00000393505	ENST00000471816		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
Frame-shit	ENST00000360025	ENST00000368037		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
Frame-shit	ENST00000360025	ENST00000392203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000360025	ENST00000368040		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000360025	ENST00000341032		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000360025	ENST00000368041		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000360025	ENST00000263285		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-intron	ENST00000360025	ENST00000368039		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-3UTR	ENST00000360025	ENST00000471816		TCGA	RV	SARC	TCGA-DX-A7EU-01A	ARRB1	chr11	75062632	-	LY9	chr1	160783426	+
5CDS-5UTR	ENST00000284509	ENST00000561030		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000284509	ENST00000567605		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000284509	ENST00000355300		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5CDS-5UTR	ENST00000559829	ENST00000561030		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000559829	ENST00000567605		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5CDS-intron	ENST00000559829	ENST00000355300		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5UTR-5UTR	ENST00000558959	ENST00000561030		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000558959	ENST00000567605		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000558959	ENST00000355300		TCGA	RV	SARC	TCGA-FX-A3NK-01A	ATP8B4	chr15	50330965	-	LINGO1	chr15	77908242	-
5UTR-intron	ENST00000234739	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5UTR-intron	ENST00000234739	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
intron-intron	ENST00000473292	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A2QS-01A	BCL9	chr1	147013444	+	BEST3	chr12	70049593	-
5CDS-5UTR	ENST00000266659	ENST00000261211		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GLIPR1	chr12	75875859	+	CDK17	chr12	96728643	-
5CDS-5UTR	ENST00000266659	ENST00000543119		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GLIPR1	chr12	75875859	+	CDK17	chr12	96728643	-
5CDS-intron	ENST00000266659	ENST00000542666		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GLIPR1	chr12	75875859	+	CDK17	chr12	96728643	-
5CDS-intron	ENST00000266659	ENST00000553042		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GLIPR1	chr12	75875859	+	CDK17	chr12	96728643	-
Frame-shit	ENST00000398810	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398810	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000398810	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000439599	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000439599	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000398812	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000398812	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000335866	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000335866	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402578	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000402578	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000403097	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000403097	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000406641	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000406641	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000357271	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000357271	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000407526	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000407526	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
In-frame	ENST00000401949	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000401949	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
Frame-shit	ENST00000402497	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000402497	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000456518		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000397174		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000402904		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000361191		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000397171		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000361705		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000326197		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000372595		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000337495		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000372596		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-3CDS	ENST00000483819	ENST00000372597		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
intron-5UTR	ENST00000483819	ENST00000472037		TCGA	RV	SARC	TCGA-DX-A6YS-01A	GRB10	chr7	50682467	-	SCMH1	chr1	41494398	-
5CDS-5UTR	ENST00000413795	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000413795	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000413795	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000413795	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000413795	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369138	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369138	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369138	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369138	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369138	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000421544	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000421544	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000421544	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000421544	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000421544	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000358361	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000358361	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000358361	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000358361	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000358361	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000318991	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000318991	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000318991	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000318991	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000318991	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369137	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369137	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369137	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369137	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369137	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369134	ENST00000392587		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369134	ENST00000392586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369134	ENST00000392588		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369134	ENST00000392589		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
5CDS-5UTR	ENST00000369134	ENST00000359451		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102134228	+	WASF1	chr6	110448832	-
intron-3CDS	ENST00000502957	ENST00000457752		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000502957	ENST00000334000		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
intron-3UTR	ENST00000502957	ENST00000505778		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000502957	ENST00000515640		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000502957	ENST00000397835		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
Frame-shit	ENST00000382611	ENST00000457752		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
In-frame	ENST00000382611	ENST00000334000		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
5CDS-3UTR	ENST00000382611	ENST00000505778		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000382611	ENST00000515640		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000382611	ENST00000397835		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
Frame-shit	ENST00000302057	ENST00000457752		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
In-frame	ENST00000302057	ENST00000334000		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
5CDS-3UTR	ENST00000302057	ENST00000505778		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000302057	ENST00000515640		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000302057	ENST00000397835		TCGA	RV	SARC	TCGA-DX-A7EI-01A	IRX2	chr5	2748459	-	C5orf38	chr5	2755143	+
In-frame	ENST00000399231	ENST00000435532		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399231	ENST00000338963		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399231	ENST00000508342		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399231	ENST00000506154		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399231	ENST00000508075		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
In-frame	ENST00000356338	ENST00000435532		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000356338	ENST00000338963		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000356338	ENST00000508342		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000356338	ENST00000506154		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000356338	ENST00000508075		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
In-frame	ENST00000358212	ENST00000435532		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000358212	ENST00000338963		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000358212	ENST00000508342		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000358212	ENST00000506154		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000358212	ENST00000508075		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
In-frame	ENST00000399233	ENST00000435532		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399233	ENST00000338963		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399233	ENST00000508342		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399233	ENST00000506154		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000399233	ENST00000508075		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
In-frame	ENST00000553916	ENST00000435532		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000553916	ENST00000338963		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000553916	ENST00000508342		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000553916	ENST00000506154		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
5CDS-intron	ENST00000553916	ENST00000508075		TCGA	RV	SARC	TCGA-VT-A80J-01A	MYO5A	chr15	52632393	-	NEDD4	chr15	56216897	-
Frame-shit	ENST00000589123	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000589123	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000589123	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000346156	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000346156	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000346156	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000395111	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000395111	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000395111	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000586919	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000586919	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000586919	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000341919	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000341919	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000341919	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000590282	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000590282	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000590282	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000443272	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000443272	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000443272	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
intron-3CDS	ENST00000588839	ENST00000391826		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
intron-3CDS	ENST00000588839	ENST00000595948		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
intron-3CDS	ENST00000588839	ENST00000341114		TCGA	RV	SARC	TCGA-DX-A1L0-01A	NFIC	chr19	3382241	+	IL4I1	chr19	50394364	-
Frame-shit	ENST00000226574	ENST00000504592		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000226574	ENST00000322953		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000226574	ENST00000428908		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000226574	ENST00000508653		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000226574	ENST00000444316		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
5CDS-intron	ENST00000226574	ENST00000510950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000394820	ENST00000504592		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000394820	ENST00000322953		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000394820	ENST00000428908		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000394820	ENST00000508653		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000394820	ENST00000444316		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
5CDS-intron	ENST00000394820	ENST00000510950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000505458	ENST00000504592		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000505458	ENST00000322953		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000505458	ENST00000428908		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000505458	ENST00000508653		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000505458	ENST00000444316		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
5CDS-intron	ENST00000505458	ENST00000510950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
intron-3CDS	ENST00000510638	ENST00000504592		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
intron-3CDS	ENST00000510638	ENST00000322953		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
intron-3CDS	ENST00000510638	ENST00000428908		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
intron-3CDS	ENST00000510638	ENST00000508653		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
intron-3CDS	ENST00000510638	ENST00000444316		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
intron-intron	ENST00000510638	ENST00000510950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000600343	ENST00000504592		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000600343	ENST00000322953		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000600343	ENST00000428908		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000600343	ENST00000508653		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
Frame-shit	ENST00000600343	ENST00000444316		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
5CDS-intron	ENST00000600343	ENST00000510950		TCGA	RV	SARC	TCGA-DX-A8BU-01A	NFKB1	chr4	103516138	+	BANK1	chr4	102984232	+
In-frame	ENST00000343702	ENST00000367765		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000343702	ENST00000367767		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000343702	ENST00000361580		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000343702	ENST00000538366		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000343702	ENST00000540905		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
5CDS-intron	ENST00000343702	ENST00000490550		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000344911	ENST00000367765		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000344911	ENST00000367767		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000344911	ENST00000361580		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000344911	ENST00000538366		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000344911	ENST00000540905		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
5CDS-intron	ENST00000344911	ENST00000490550		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
Frame-shit	ENST00000538383	ENST00000367765		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
Frame-shit	ENST00000538383	ENST00000367767		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
Frame-shit	ENST00000538383	ENST00000361580		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
Frame-shit	ENST00000538383	ENST00000538366		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
Frame-shit	ENST00000538383	ENST00000540905		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
5CDS-intron	ENST00000538383	ENST00000490550		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000553059	ENST00000367765		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000553059	ENST00000367767		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000553059	ENST00000361580		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000553059	ENST00000538366		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
In-frame	ENST00000553059	ENST00000540905		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
5CDS-intron	ENST00000553059	ENST00000490550		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000552603	ENST00000367765		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000552603	ENST00000367767		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000552603	ENST00000361580		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000552603	ENST00000538366		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000552603	ENST00000540905		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
intron-intron	ENST00000552603	ENST00000490550		TCGA	RV	SARC	TCGA-DX-A1L3-01A	NTN4	chr12	96180717	-	KIFAP3	chr1	169930376	-
Frame-shit	ENST00000229179	ENST00000541951		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000229179	ENST00000310571		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000229179	ENST00000535604		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000229179	ENST00000536003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000229179	ENST00000544552		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000229179	ENST00000376384		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000229179	ENST00000543079		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000229179	ENST00000544909		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000378905	ENST00000541951		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000378905	ENST00000310571		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000378905	ENST00000535604		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000378905	ENST00000536003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000378905	ENST00000544552		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000378905	ENST00000376384		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000378905	ENST00000543079		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000378905	ENST00000544909		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000539906	ENST00000541951		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000539906	ENST00000310571		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000539906	ENST00000535604		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000539906	ENST00000536003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000539906	ENST00000544552		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
Frame-shit	ENST00000539906	ENST00000376384		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000539906	ENST00000543079		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
5CDS-intron	ENST00000539906	ENST00000544909		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-3CDS	ENST00000401003	ENST00000541951		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-3CDS	ENST00000401003	ENST00000310571		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-3CDS	ENST00000401003	ENST00000535604		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-3CDS	ENST00000401003	ENST00000536003		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-3CDS	ENST00000401003	ENST00000544552		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-3CDS	ENST00000401003	ENST00000376384		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-intron	ENST00000401003	ENST00000543079		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
intron-intron	ENST00000401003	ENST00000544909		TCGA	RV	SARC	TCGA-DX-A3U6-01A	NUP107	chr12	69115932	+	PAAF1	chr11	73620444	+
In-frame	ENST00000228705	ENST00000402685		TCGA	RV	SARC	TCGA-MB-A8JL-01A	PPM1H	chr12	63087716	-	PDZRN4	chr12	41900258	+
In-frame	ENST00000228705	ENST00000539469		TCGA	RV	SARC	TCGA-MB-A8JL-01A	PPM1H	chr12	63087716	-	PDZRN4	chr12	41900258	+
In-frame	ENST00000228705	ENST00000298919		TCGA	RV	SARC	TCGA-MB-A8JL-01A	PPM1H	chr12	63087716	-	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000551214	ENST00000402685		TCGA	RV	SARC	TCGA-MB-A8JL-01A	PPM1H	chr12	63087716	-	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000551214	ENST00000539469		TCGA	RV	SARC	TCGA-MB-A8JL-01A	PPM1H	chr12	63087716	-	PDZRN4	chr12	41900258	+
5UTR-3CDS	ENST00000551214	ENST00000298919		TCGA	RV	SARC	TCGA-MB-A8JL-01A	PPM1H	chr12	63087716	-	PDZRN4	chr12	41900258	+
In-frame	ENST00000331920	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000331920	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000331920	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-3CDS	ENST00000418258	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-5UTR	ENST00000418258	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-5UTR	ENST00000418258	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-3CDS	ENST00000421141	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-5UTR	ENST00000421141	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-5UTR	ENST00000421141	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
In-frame	ENST00000437951	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000437951	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000437951	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
Frame-shit	ENST00000430669	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000430669	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000430669	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-3CDS	ENST00000429896	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-5UTR	ENST00000429896	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5UTR-5UTR	ENST00000429896	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
In-frame	ENST00000375274	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000375274	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000375274	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
intron-3CDS	ENST00000548379	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
intron-5UTR	ENST00000548379	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
intron-5UTR	ENST00000548379	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
Frame-shit	ENST00000468211	ENST00000287996		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000468211	ENST00000486841		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
5CDS-5UTR	ENST00000468211	ENST00000375522		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PTCH1	chr9	98268689	-	IPPK	chr9	95381847	-
In-frame	ENST00000267163	ENST00000400324		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
In-frame	ENST00000267163	ENST00000400330		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
5CDS-intron	ENST00000267163	ENST00000400319		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
5CDS-intron	ENST00000267163	ENST00000400320		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
5CDS-intron	ENST00000267163	ENST00000377908		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
5CDS-intron	ENST00000267163	ENST00000267215		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
5CDS-intron	ENST00000267163	ENST00000465066		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-3CDS	ENST00000484879	ENST00000400324		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-3CDS	ENST00000484879	ENST00000400330		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-intron	ENST00000484879	ENST00000400319		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-intron	ENST00000484879	ENST00000400320		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-intron	ENST00000484879	ENST00000377908		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-intron	ENST00000484879	ENST00000267215		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-intron	ENST00000484879	ENST00000465066		TCGA	RV	SARC	TCGA-LI-A9QH-01A	RB1	chr13	48881542	+	DIAPH3	chr13	60707123	-
intron-3CDS	ENST00000335670	ENST00000306726		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-intron	ENST00000335670	ENST00000564970		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-3CDS	ENST00000309157	ENST00000306726		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-intron	ENST00000309157	ENST00000564970		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-3CDS	ENST00000261523	ENST00000306726		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-intron	ENST00000261523	ENST00000564970		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
In-frame	ENST00000449337	ENST00000306726		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
5CDS-intron	ENST00000449337	ENST00000564970		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-3CDS	ENST00000560004	ENST00000306726		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
intron-intron	ENST00000560004	ENST00000564970		TCGA	RV	SARC	TCGA-SI-AA8B-01A	RORA	chr15	60884586	-	PTPN9	chr15	75798344	-
In-frame	ENST00000377921	ENST00000300027		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
In-frame	ENST00000377921	ENST00000310775		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
5CDS-intron	ENST00000377921	ENST00000451393		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
5CDS-intron	ENST00000377921	ENST00000567996		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
5CDS-intron	ENST00000377921	ENST00000566615		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
Frame-shit	ENST00000345264	ENST00000300027		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
Frame-shit	ENST00000345264	ENST00000310775		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
5CDS-intron	ENST00000345264	ENST00000451393		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
5CDS-intron	ENST00000345264	ENST00000567996		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
5CDS-intron	ENST00000345264	ENST00000566615		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-3CDS	ENST00000602389	ENST00000300027		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-3CDS	ENST00000602389	ENST00000310775		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-intron	ENST00000602389	ENST00000451393		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-intron	ENST00000602389	ENST00000567996		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-intron	ENST00000602389	ENST00000566615		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-3CDS	ENST00000464074	ENST00000300027		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-3CDS	ENST00000464074	ENST00000310775		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-intron	ENST00000464074	ENST00000451393		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-intron	ENST00000464074	ENST00000567996		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
intron-intron	ENST00000464074	ENST00000566615		TCGA	RV	SARC	TCGA-DX-A1L4-01A	RSU1	chr10	16858972	-	FANCI	chr15	89816608	+
Frame-shit	ENST00000392650	ENST00000321196		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
Frame-shit	ENST00000392650	ENST00000548305		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
Frame-shit	ENST00000392650	ENST00000549919		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
Frame-shit	ENST00000388726	ENST00000321196		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
Frame-shit	ENST00000388726	ENST00000548305		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
Frame-shit	ENST00000388726	ENST00000549919		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
intron-3CDS	ENST00000410094	ENST00000321196		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
intron-3CDS	ENST00000410094	ENST00000548305		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
intron-3CDS	ENST00000410094	ENST00000549919		TCGA	RV	SARC	TCGA-DX-AB2H-01A	SDK2	chr17	71375316	-	TMTC2	chr12	83250789	+
5UTR-3CDS	ENST00000240095	ENST00000391826		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000240095	ENST00000595948		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000240095	ENST00000341114		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000359741	ENST00000391826		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000359741	ENST00000595948		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000359741	ENST00000341114		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000381237	ENST00000391826		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000381237	ENST00000595948		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
5UTR-3CDS	ENST00000381237	ENST00000341114		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
intron-3CDS	ENST00000289952	ENST00000391826		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
intron-3CDS	ENST00000289952	ENST00000595948		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
intron-3CDS	ENST00000289952	ENST00000341114		TCGA	RV	SARC	TCGA-KF-A41W-01A	SLC39A14	chr8	22224921	+	IL4I1	chr19	50399310	-
Frame-shit	ENST00000393446	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393446	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393446	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393446	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393446	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393446	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393446	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393446	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393446	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393446	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-3UTR	ENST00000393446	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393446	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000265437	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000265437	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000265437	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000265437	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-3UTR	ENST00000265437	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000265437	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393451	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393451	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393451	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393451	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-3UTR	ENST00000393451	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393451	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000393449	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393449	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393449	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393449	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-3UTR	ENST00000393449	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000393449	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000323984	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000323984	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000323984	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000323984	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-3UTR	ENST00000323984	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
5CDS-intron	ENST00000323984	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000432298	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000432298	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000432298	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000432298	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000432298	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000432298	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000422922	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000422922	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000422922	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000422922	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000422922	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000422922	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000487459	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000487459	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000487459	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000487459	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000487459	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000487459	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393443	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393443	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393443	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393443	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000393443	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393443	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393447	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393447	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393447	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393447	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000393447	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393447	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000393444	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393444	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393444	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393444	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000393444	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000393444	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000425687		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000263552		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000336425		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000436047		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000416849		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000414508		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3CDS	ENST00000465133	ENST00000448866		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000465133	ENST00000455353		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000465133	ENST00000458722		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000465133	ENST00000411653		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-3UTR	ENST00000465133	ENST00000462275		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
intron-intron	ENST00000465133	ENST00000539806		TCGA	RV	SARC	TCGA-DX-AB37-01A	ST7	chr7	116593745	+	TBXAS1	chr7	139706891	+
Frame-shit	ENST00000261180	ENST00000550746		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
Frame-shit	ENST00000261180	ENST00000319106		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
Frame-shit	ENST00000261180	ENST00000485960		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
5CDS-5UTR	ENST00000261180	ENST00000393309		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
5CDS-intron	ENST00000261180	ENST00000548679		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
intron-3CDS	ENST00000549138	ENST00000550746		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
intron-3CDS	ENST00000549138	ENST00000319106		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
intron-3CDS	ENST00000549138	ENST00000485960		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
intron-5UTR	ENST00000549138	ENST00000393309		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
intron-intron	ENST00000549138	ENST00000548679		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	TRHDE	chr12	72771901	+	TBC1D15	chr12	72287002	+
In-frame	ENST00000395996	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000395996	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000395996	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000395996	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000395996	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000358544	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000358544	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000358544	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000358544	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000358544	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000357162	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000357162	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000357162	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000357162	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000357162	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000355155	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000355155	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000355155	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000355155	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000355155	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000441350	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000441350	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000441350	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
In-frame	ENST00000441350	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000441350	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521932	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521932	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521932	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000521932	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-intron	ENST00000521932	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A3M1-01A	VPS13B	chr8	100050794	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000524394	ENST00000297265		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	ZNF251	chr8	145979068	-	CHMP4C	chr8	82665299	+
Frame-shit	ENST00000292562	ENST00000297265		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	ZNF251	chr8	145979068	-	CHMP4C	chr8	82665299	+
5CDS-5UTR	ENST00000397843	ENST00000278935		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARHGEF12	chr11	120207984	+	CEP164	chr11	117209282	+
5CDS-intron	ENST00000397843	ENST00000533706		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARHGEF12	chr11	120207984	+	CEP164	chr11	117209282	+
5CDS-5UTR	ENST00000356641	ENST00000278935		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARHGEF12	chr11	120207984	+	CEP164	chr11	117209282	+
5CDS-intron	ENST00000356641	ENST00000533706		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARHGEF12	chr11	120207984	+	CEP164	chr11	117209282	+
intron-5UTR	ENST00000532993	ENST00000278935		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARHGEF12	chr11	120207984	+	CEP164	chr11	117209282	+
intron-intron	ENST00000532993	ENST00000533706		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ARHGEF12	chr11	120207984	+	CEP164	chr11	117209282	+
Frame-shit	ENST00000349938	ENST00000406610		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
5CDS-intron	ENST00000349938	ENST00000462231		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
5CDS-intron	ENST00000349938	ENST00000349953		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
5CDS-intron	ENST00000349938	ENST00000358768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
5CDS-intron	ENST00000349938	ENST00000351153		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
5CDS-intron	ENST00000349938	ENST00000488622		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
3UTR-3CDS	ENST00000483477	ENST00000406610		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
3UTR-intron	ENST00000483477	ENST00000462231		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
3UTR-intron	ENST00000483477	ENST00000349953		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
3UTR-intron	ENST00000483477	ENST00000358768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
3UTR-intron	ENST00000483477	ENST00000351153		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
3UTR-intron	ENST00000483477	ENST00000488622		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ARMC9	chr2	232104754	+	PARD3B	chr2	206305094	+
intron-3UTR	ENST00000417172	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000417172	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000417172	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000417172	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-3UTR	ENST00000361388	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-3UTR	ENST00000361388	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-intron	ENST00000361388	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-intron	ENST00000361388	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000422748	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000422748	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000422748	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000422748	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000361675	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000361675	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000361675	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000361675	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000361901	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000361901	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000361901	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000361901	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-3UTR	ENST00000393118	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-3UTR	ENST00000393118	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-intron	ENST00000393118	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
3UTR-intron	ENST00000393118	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000495522	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000495522	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000495522	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000495522	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000424922	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000424922	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000424922	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000424922	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000543443	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000543443	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000543443	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000543443	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000466704	ENST00000355327		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000466704	ENST00000261862		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000466704	ENST00000357769		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
intron-intron	ENST00000466704	ENST00000567838		TCGA	RV	SARC	TCGA-DX-A48L-01A	CALD1	chr7	134655392	+	THSD4	chr15	72072881	+
In-frame	ENST00000392455	ENST00000539563		TCGA	RV	SARC	TCGA-DX-A8BL-01A	CCDC50	chr3	191087825	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000392455	ENST00000490035		TCGA	RV	SARC	TCGA-DX-A8BL-01A	CCDC50	chr3	191087825	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000392455	ENST00000498645		TCGA	RV	SARC	TCGA-DX-A8BL-01A	CCDC50	chr3	191087825	+	LSAMP	chr3	116163802	-
In-frame	ENST00000392456	ENST00000539563		TCGA	RV	SARC	TCGA-DX-A8BL-01A	CCDC50	chr3	191087825	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000392456	ENST00000490035		TCGA	RV	SARC	TCGA-DX-A8BL-01A	CCDC50	chr3	191087825	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000392456	ENST00000498645		TCGA	RV	SARC	TCGA-DX-A8BL-01A	CCDC50	chr3	191087825	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000381527	ENST00000243913		TCGA	RV	SARC	TCGA-SI-AA8B-01A	CDK8	chr13	26928017	+	GCNT7	chr20	55070353	-
Frame-shit	ENST00000536792	ENST00000243913		TCGA	RV	SARC	TCGA-SI-AA8B-01A	CDK8	chr13	26928017	+	GCNT7	chr20	55070353	-
intron-3CDS	ENST00000480323	ENST00000243913		TCGA	RV	SARC	TCGA-SI-AA8B-01A	CDK8	chr13	26928017	+	GCNT7	chr20	55070353	-
In-frame	ENST00000361570	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000361570	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000361570	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000361570	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000304494	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000304494	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000304494	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000304494	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000579755	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000579755	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000579755	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000579755	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000579122	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000579122	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000579122	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000579122	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000578845	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000578845	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000578845	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000578845	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000530628	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000530628	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000530628	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
In-frame	ENST00000530628	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498124	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498124	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498124	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498124	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498628	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498628	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498628	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000498628	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000494262	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000494262	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000494262	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000494262	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000446177	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000446177	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000446177	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000446177	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000479692	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000479692	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000479692	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000479692	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000497750	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000497750	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000497750	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000497750	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000470819	ENST00000360416		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000470819	ENST00000379980		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000470819	ENST00000396239		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
intron-3CDS	ENST00000470819	ENST00000269243		TCGA	RV	SARC	TCGA-SI-A71P-01A	CDKN2A	chr9	21994138	-	MYH10	chr17	8508300	-
5CDS-5UTR	ENST00000443824	ENST00000397180		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000443824	ENST00000457380		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000443824	ENST00000352078		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-3UTR	ENST00000443824	ENST00000469346		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000443824	ENST00000336169		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000359276	ENST00000397180		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000359276	ENST00000457380		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000359276	ENST00000352078		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-3UTR	ENST00000359276	ENST00000469346		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000359276	ENST00000336169		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000380241	ENST00000397180		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000380241	ENST00000457380		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000380241	ENST00000352078		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-3UTR	ENST00000380241	ENST00000469346		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5CDS-5UTR	ENST00000380241	ENST00000336169		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
intron-5UTR	ENST00000483053	ENST00000397180		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
intron-5UTR	ENST00000483053	ENST00000457380		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
intron-5UTR	ENST00000483053	ENST00000352078		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
intron-3UTR	ENST00000483053	ENST00000469346		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
intron-5UTR	ENST00000483053	ENST00000336169		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716359	-	RGN	chrX	46940529	+
5UTR-intron	ENST00000485760	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5UTR-intron	ENST00000485760	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5UTR-intron	ENST00000485760	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371236	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371236	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371236	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371234	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371234	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371234	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000420954	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000420954	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000420954	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000439789	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000439789	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000439789	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000414851	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000414851	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000414851	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371231	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371231	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371231	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371230	ENST00000358603		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371230	ENST00000371226		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
5CDS-intron	ENST00000371230	ENST00000467063		TCGA	RV	SARC	TCGA-DX-A23U-01A	DAB1	chr1	57602216	-	OMA1	chr1	58946846	-
Frame-shit	ENST00000360631	ENST00000376873		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
Frame-shit	ENST00000360631	ENST00000299339		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000360631	ENST00000376855		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
Frame-shit	ENST00000255448	ENST00000376873		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
Frame-shit	ENST00000255448	ENST00000299339		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000255448	ENST00000376855		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
Frame-shit	ENST00000379892	ENST00000376873		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
Frame-shit	ENST00000379892	ENST00000299339		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000379892	ENST00000376855		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
intron-3CDS	ENST00000379893	ENST00000376873		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
intron-3CDS	ENST00000379893	ENST00000299339		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
intron-intron	ENST00000379893	ENST00000376855		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
intron-3CDS	ENST00000460982	ENST00000376873		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
intron-3CDS	ENST00000460982	ENST00000299339		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
intron-intron	ENST00000460982	ENST00000376855		TCGA	RV	SARC	TCGA-DX-A8BV-01A	DCLK1	chr13	36686006	-	CLDN10	chr13	96212386	+
5CDS-3UTR	ENST00000585892	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000585892	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000314646	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000314646	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000359692	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000359692	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000389253	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000389253	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000355667	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000355667	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000408974	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
5CDS-3UTR	ENST00000408974	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
intron-3UTR	ENST00000591819	ENST00000413482		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
intron-3UTR	ENST00000591819	ENST00000272847		TCGA	RV	SARC	TCGA-FX-A3NK-01A	DNM2	chr19	10829079	+	PTH2R	chr2	209292926	+
3UTR-3CDS	ENST00000540275	ENST00000367328		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
3UTR-3CDS	ENST00000540275	ENST00000358517		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000452085	ENST00000367328		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000452085	ENST00000358517		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000537543	ENST00000367328		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000537543	ENST00000358517		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000331677	ENST00000367328		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000331677	ENST00000358517		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000359564	ENST00000367328		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000359564	ENST00000358517		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
intron-3CDS	ENST00000606265	ENST00000367328		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
intron-3CDS	ENST00000606265	ENST00000358517		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720829	+	PLEKHG1	chr6	151130241	+
intron-3CDS	ENST00000327921	ENST00000415930		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
intron-3CDS	ENST00000327921	ENST00000356487		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
intron-3CDS	ENST00000327921	ENST00000586425		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
Frame-shit	ENST00000262233	ENST00000415930		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
Frame-shit	ENST00000262233	ENST00000356487		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
Frame-shit	ENST00000262233	ENST00000586425		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
Frame-shit	ENST00000334192	ENST00000415930		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
Frame-shit	ENST00000334192	ENST00000356487		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
Frame-shit	ENST00000334192	ENST00000586425		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
intron-3CDS	ENST00000556758	ENST00000415930		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
intron-3CDS	ENST00000556758	ENST00000356487		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
intron-3CDS	ENST00000556758	ENST00000586425		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884153	+
5UTR-3CDS	ENST00000299293	ENST00000256190		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
5UTR-intron	ENST00000299293	ENST00000527019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
5UTR-3CDS	ENST00000549921	ENST00000256190		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
5UTR-intron	ENST00000549921	ENST00000527019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
intron-3CDS	ENST00000550389	ENST00000256190		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
intron-intron	ENST00000550389	ENST00000527019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
5UTR-3CDS	ENST00000397997	ENST00000256190		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
5UTR-intron	ENST00000397997	ENST00000527019		TCGA	RV	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69925836	+	SBF2	chr11	9817504	-
5CDS-5UTR	ENST00000378695	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000378695	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000378695	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000378695	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000378695	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000378695	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000378695	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000378695	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000378695	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000312442	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000312442	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000312442	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000312442	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000312442	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000312442	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000312442	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000312442	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000312442	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000548623	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000548623	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000548623	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000548623	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000548623	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000548623	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-intron	ENST00000548623	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-intron	ENST00000548623	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
intron-intron	ENST00000548623	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A3LS-01A	GLIPR1L1	chr12	75728682	+	RAB3IP	chr12	70149164	+
Frame-shit	ENST00000540418	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
Frame-shit	ENST00000540418	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
In-frame	ENST00000303145	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
In-frame	ENST00000303145	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
In-frame	ENST00000411698	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
In-frame	ENST00000411698	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
intron-3CDS	ENST00000393543	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
intron-3CDS	ENST00000393543	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
intron-3CDS	ENST00000430606	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
intron-3CDS	ENST00000430606	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
intron-3CDS	ENST00000545724	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
intron-3CDS	ENST00000545724	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	MDM1	chr12	68696400	-	INSR	chr19	7152938	-
Frame-shit	ENST00000582151	ENST00000323675		TCGA	RV	SARC	TCGA-WK-A8XX-01A	MPDU1	chr17	7487283	+	SPEM1	chr17	7323946	+
Frame-shit	ENST00000250124	ENST00000323675		TCGA	RV	SARC	TCGA-WK-A8XX-01A	MPDU1	chr17	7487283	+	SPEM1	chr17	7323946	+
Frame-shit	ENST00000396501	ENST00000323675		TCGA	RV	SARC	TCGA-WK-A8XX-01A	MPDU1	chr17	7487283	+	SPEM1	chr17	7323946	+
Frame-shit	ENST00000423172	ENST00000323675		TCGA	RV	SARC	TCGA-WK-A8XX-01A	MPDU1	chr17	7487283	+	SPEM1	chr17	7323946	+
In-frame	ENST00000262384	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
In-frame	ENST00000262384	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
In-frame	ENST00000262384	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
In-frame	ENST00000262384	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
5CDS-intron	ENST00000262384	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
5CDS-intron	ENST00000262384	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
intron-3CDS	ENST00000565423	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
intron-3CDS	ENST00000565423	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
intron-3CDS	ENST00000565423	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
intron-3CDS	ENST00000565423	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
intron-intron	ENST00000565423	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
intron-intron	ENST00000565423	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48594665	-	NAV3	chr12	78510552	+
5CDS-intron	ENST00000287437	ENST00000341807		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000287437	ENST00000303045		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000287437	ENST00000435777		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000522563	ENST00000341807		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000522563	ENST00000303045		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000522563	ENST00000435777		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000517315	ENST00000341807		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000517315	ENST00000303045		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
5CDS-intron	ENST00000517315	ENST00000435777		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
intron-intron	ENST00000521460	ENST00000341807		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
intron-intron	ENST00000521460	ENST00000303045		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
intron-intron	ENST00000521460	ENST00000435777		TCGA	RV	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126194498	+	COL22A1	chr8	139856401	-
Frame-shit	ENST00000343702	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000343702	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000344911	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000344911	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000538383	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000538383	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000553059	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000553059	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
intron-3CDS	ENST00000552603	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
intron-intron	ENST00000552603	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96104219	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000402802	ENST00000265857		TCGA	RV	SARC	TCGA-DX-A8BG-01A	PDGFA	chr7	558576	-	GET4	chr7	925693	+
5CDS-5UTR	ENST00000402802	ENST00000407192		TCGA	RV	SARC	TCGA-DX-A8BG-01A	PDGFA	chr7	558576	-	GET4	chr7	925693	+
Frame-shit	ENST00000354513	ENST00000265857		TCGA	RV	SARC	TCGA-DX-A8BG-01A	PDGFA	chr7	558576	-	GET4	chr7	925693	+
5CDS-5UTR	ENST00000354513	ENST00000407192		TCGA	RV	SARC	TCGA-DX-A8BG-01A	PDGFA	chr7	558576	-	GET4	chr7	925693	+
intron-3CDS	ENST00000426681	ENST00000265857		TCGA	RV	SARC	TCGA-DX-A8BG-01A	PDGFA	chr7	558576	-	GET4	chr7	925693	+
intron-5UTR	ENST00000426681	ENST00000407192		TCGA	RV	SARC	TCGA-DX-A8BG-01A	PDGFA	chr7	558576	-	GET4	chr7	925693	+
In-frame	ENST00000257290	ENST00000307179		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
In-frame	ENST00000257290	ENST00000433963		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
In-frame	ENST00000257290	ENST00000396444		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
In-frame	ENST00000257290	ENST00000425032		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
5CDS-intron	ENST00000257290	ENST00000558892		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
intron-3CDS	ENST00000508170	ENST00000307179		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
intron-3CDS	ENST00000508170	ENST00000433963		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
intron-3CDS	ENST00000508170	ENST00000396444		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
intron-3CDS	ENST00000508170	ENST00000425032		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
intron-intron	ENST00000508170	ENST00000558892		TCGA	RV	SARC	TCGA-Z4-AAPG-01A	PDGFRA	chr4	55156721	+	USP8	chr15	50751197	+
5CDS-intron	ENST00000315392	ENST00000538928		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000584529		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000290866		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000428043		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000490216		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000577647		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000290863		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000421982		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000315392	ENST00000413513		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000538928		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000584529		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000290866		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000428043		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000490216		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000577647		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000290863		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000421982		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000413513		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000538928		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000584529		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000290866		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000428043		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000490216		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000577647		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000290863		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000421982		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000413513		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000538928		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000584529		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000290866		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000428043		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000490216		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000577647		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000290863		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000421982		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
intron-intron	ENST00000444911	ENST00000413513		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000538928		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000584529		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000290866		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000428043		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000490216		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000577647		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000290863		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000421982		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000394316	ENST00000413513		TCGA	RV	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37307615	-	ACE	chr17	61566009	+
5UTR-5UTR	ENST00000247833	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000247833	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000247833	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000247833	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000378815	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000378815	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000378815	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000378815	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000325555	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000325555	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000325555	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000325555	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000483530	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-5UTR	ENST00000483530	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000483530	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
5UTR-intron	ENST00000483530	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000550536	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000550536	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000550536	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000550536	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000362025	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000362025	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000362025	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000362025	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000551641	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000551641	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000551641	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000551641	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000553099	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000553099	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000553099	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000553099	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000550847	ENST00000323688		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-5UTR	ENST00000550847	ENST00000529010		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000550847	ENST00000458064		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
intron-intron	ENST00000550847	ENST00000532240		TCGA	RV	SARC	TCGA-WK-A8XO-01A	RAB3IP	chr12	70132811	+	NUCB2	chr11	17304336	+
Frame-shit	ENST00000310653	ENST00000449934		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000417899		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000497496		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000427477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000446505		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000547767		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000400322		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000493320		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000400325		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000547609		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000420259		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000468858		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000418465		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000432479		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000552236		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000438928		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000486844		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000415525		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000414473		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000310653	ENST00000546529		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
Frame-shit	ENST00000336083	ENST00000449934		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000417899		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000497496		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000427477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000446505		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000547767		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000400322		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000493320		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000400325		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000547609		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000420259		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000468858		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000418465		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000432479		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000552236		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000438928		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000486844		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000415525		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000414473		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000336083	ENST00000546529		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
Frame-shit	ENST00000536566	ENST00000449934		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000417899		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000497496		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000427477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000446505		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000547767		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000400322		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000493320		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000400325		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000547609		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000420259		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000468858		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000418465		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000432479		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000552236		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000438928		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000486844		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000415525		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000414473		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000536566	ENST00000546529		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
Frame-shit	ENST00000541588	ENST00000449934		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000417899		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000497496		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000427477		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000446505		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000547767		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000400322		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000493320		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000400325		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000547609		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000420259		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000468858		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000418465		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000432479		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000552236		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000438928		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000486844		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000415525		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000414473		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
5CDS-intron	ENST00000541588	ENST00000546529		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RAB6A	chr11	73441810	-	MICA	chr6	31378320	+
Frame-shit	ENST00000253363	ENST00000381554		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000253363	ENST00000290244		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000253363	ENST00000381540		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000253363	ENST00000445393		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000253363	ENST00000361534		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000253363	ENST00000413017		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000253363	ENST00000480893		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000253363	ENST00000399442		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000361162	ENST00000381554		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000361162	ENST00000290244		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000361162	ENST00000381540		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000361162	ENST00000445393		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000361162	ENST00000361534		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000361162	ENST00000413017		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000361162	ENST00000480893		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000361162	ENST00000399442		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000528062	ENST00000381554		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000528062	ENST00000290244		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000528062	ENST00000381540		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000528062	ENST00000445393		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000528062	ENST00000361534		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000528062	ENST00000413017		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000528062	ENST00000480893		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000528062	ENST00000399442		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000407261	ENST00000381554		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000407261	ENST00000290244		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000407261	ENST00000381540		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000407261	ENST00000445393		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000407261	ENST00000361534		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000407261	ENST00000413017		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000407261	ENST00000480893		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
5CDS-intron	ENST00000407261	ENST00000399442		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000397370	ENST00000381554		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000397370	ENST00000290244		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000397370	ENST00000381540		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000397370	ENST00000445393		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000397370	ENST00000361534		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-intron	ENST00000397370	ENST00000413017		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-intron	ENST00000397370	ENST00000480893		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-intron	ENST00000397370	ENST00000399442		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000463098	ENST00000381554		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000463098	ENST00000290244		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000463098	ENST00000381540		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000463098	ENST00000445393		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-3CDS	ENST00000463098	ENST00000361534		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-intron	ENST00000463098	ENST00000413017		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-intron	ENST00000463098	ENST00000480893		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
intron-intron	ENST00000463098	ENST00000399442		TCGA	RV	SARC	TCGA-DX-A3LW-01A	RBM39	chr20	34304662	-	CRYZL1	chr21	34975843	-
Frame-shit	ENST00000367069	ENST00000375023		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000443903		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000465528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000425600		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000437843		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000495974		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000439349		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000490019		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000383264		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000461090		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000454571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000487528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000457094		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000367069	ENST00000493728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-3CDS	ENST00000607398	ENST00000375023		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000443903		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000465528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000425600		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000437843		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000495974		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000439349		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000490019		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000383264		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000461090		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000454571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000487528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000457094		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
intron-intron	ENST00000607398	ENST00000493728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
Frame-shit	ENST00000449822	ENST00000375023		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000443903		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000465528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000425600		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000437843		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000495974		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000439349		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000490019		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000383264		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000461090		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000454571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000487528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000457094		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000449822	ENST00000493728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
Frame-shit	ENST00000297262	ENST00000375023		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000443903		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000465528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000425600		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000437843		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000495974		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000439349		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000490019		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000383264		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000461090		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000454571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000487528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000457094		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000297262	ENST00000493728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
Frame-shit	ENST00000252655	ENST00000375023		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000443903		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000465528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000425600		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000437843		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000495974		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000439349		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000490019		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000383264		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000461090		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000454571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000487528		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000457094		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
5CDS-intron	ENST00000252655	ENST00000493728		TCGA	RV	SARC	TCGA-DX-A23Z-01A	RSPH3	chr6	159420467	-	NOTCH4	chr6	32171659	-
Frame-shit	ENST00000374759	ENST00000354905		TCGA	RV	SARC	TCGA-DX-A1L2-01A	SLC38A10	chr17	79244718	-	TMEM207	chr3	190147520	-
Frame-shit	ENST00000288439	ENST00000354905		TCGA	RV	SARC	TCGA-DX-A1L2-01A	SLC38A10	chr17	79244718	-	TMEM207	chr3	190147520	-
5UTR-3CDS	ENST00000546352	ENST00000354905		TCGA	RV	SARC	TCGA-DX-A1L2-01A	SLC38A10	chr17	79244718	-	TMEM207	chr3	190147520	-
5CDS-intron	ENST00000517970	ENST00000517820		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000517970	ENST00000520733		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000517970	ENST00000309822		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000517970	ENST00000357148		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000349423	ENST00000517820		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000349423	ENST00000520733		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000349423	ENST00000309822		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000349423	ENST00000357148		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000341922	ENST00000517820		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000341922	ENST00000520733		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000341922	ENST00000309822		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000341922	ENST00000357148		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000265428	ENST00000517820		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000265428	ENST00000520733		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000265428	ENST00000309822		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-intron	ENST00000265428	ENST00000357148		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
intron-intron	ENST00000523863	ENST00000517820		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
intron-intron	ENST00000523863	ENST00000520733		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
intron-intron	ENST00000523863	ENST00000309822		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
intron-intron	ENST00000523863	ENST00000357148		TCGA	RV	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117783695	+
5CDS-5UTR	ENST00000223357	ENST00000376876		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000223357	ENST00000376875		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000223357	ENST00000317669		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000223357	ENST00000480105		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000454218	ENST00000376876		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000454218	ENST00000376875		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000454218	ENST00000317669		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
intron-intron	ENST00000454218	ENST00000480105		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000450684	ENST00000376876		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000450684	ENST00000376875		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000450684	ENST00000317669		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000450684	ENST00000480105		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AEBP1	chr7	44154161	+	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000374079	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000374079	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000374079	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000374079	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-5UTR	ENST00000307564	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000307564	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000307564	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000307564	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-5UTR	ENST00000374088	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-intron	ENST00000374088	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-intron	ENST00000374088	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-intron	ENST00000374088	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-5UTR	ENST00000492875	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000492875	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000492875	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000492875	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-5UTR	ENST00000223791	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000223791	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000223791	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000223791	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-5UTR	ENST00000374075	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000374075	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000374075	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
intron-intron	ENST00000374075	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-5UTR	ENST00000312033	ENST00000261488		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-intron	ENST00000312033	ENST00000412891		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-intron	ENST00000312033	ENST00000540032		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
5UTR-intron	ENST00000312033	ENST00000482207		TCGA	RV	SARC	TCGA-JV-A75J-01A	AKNA	chr9	117150140	-	ENOX1	chr13	44241680	-
In-frame	ENST00000343823	ENST00000360314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000343823	ENST00000371336		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000343823	ENST00000434344		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000250635	ENST00000360314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000250635	ENST00000371336		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000250635	ENST00000434344		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000545394	ENST00000360314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000545394	ENST00000371336		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000545394	ENST00000434344		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000428278	ENST00000360314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000428278	ENST00000371336		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000428278	ENST00000434344		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000521652	ENST00000360314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000521652	ENST00000371336		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
In-frame	ENST00000521652	ENST00000434344		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
intron-3CDS	ENST00000524263	ENST00000360314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
intron-3CDS	ENST00000524263	ENST00000371336		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
intron-3CDS	ENST00000524263	ENST00000434344		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ASH2L	chr8	37991064	+	CASS4	chr20	55020956	+
Frame-shit	ENST00000319769	ENST00000354619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	B4GALT3	chr1	161143395	-	ERO1LB	chr1	236406795	-
5CDS-intron	ENST00000319769	ENST00000327333		TCGA	RV	SARC	TCGA-FX-A2QS-01A	B4GALT3	chr1	161143395	-	ERO1LB	chr1	236406795	-
5UTR-3CDS	ENST00000470882	ENST00000354619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	B4GALT3	chr1	161143395	-	ERO1LB	chr1	236406795	-
5UTR-intron	ENST00000470882	ENST00000327333		TCGA	RV	SARC	TCGA-FX-A2QS-01A	B4GALT3	chr1	161143395	-	ERO1LB	chr1	236406795	-
Frame-shit	ENST00000367998	ENST00000354619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	B4GALT3	chr1	161143395	-	ERO1LB	chr1	236406795	-
5CDS-intron	ENST00000367998	ENST00000327333		TCGA	RV	SARC	TCGA-FX-A2QS-01A	B4GALT3	chr1	161143395	-	ERO1LB	chr1	236406795	-
In-frame	ENST00000335762	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000335762	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000335762	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000335762	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000335762	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399655	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399655	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399655	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399655	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399655	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000480911	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000480911	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000480911	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000480911	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000480911	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399644	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399644	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399644	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399644	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399644	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000344100	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000344100	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000344100	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000344100	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000344100	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399638	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399638	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399638	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399638	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399638	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399629	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399629	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399629	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399629	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399629	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399597	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399597	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399597	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399597	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399597	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000327702	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000327702	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000327702	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000327702	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000327702	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399621	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399621	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399621	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399621	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399621	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399649	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399649	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399649	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399649	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399649	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399637	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399637	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399637	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399637	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399637	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000402845	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000402845	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000402845	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000402845	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000402845	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399591	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399591	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399591	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399591	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399591	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399641	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399641	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399641	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399641	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399641	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000347598	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000347598	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000347598	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000347598	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000347598	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399606	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399606	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399606	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399606	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399606	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399595	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399595	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399595	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399595	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399595	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399601	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399601	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399601	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399601	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399601	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399603	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399603	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399603	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399603	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399603	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399634	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399634	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399634	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399634	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399634	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399617	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399617	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000399617	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399617	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000399617	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000406454	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000406454	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000406454	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000406454	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
5CDS-intron	ENST00000406454	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
intron-3CDS	ENST00000491104	ENST00000309283		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
intron-3CDS	ENST00000491104	ENST00000266682		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
intron-3CDS	ENST00000491104	ENST00000552192		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
intron-intron	ENST00000491104	ENST00000551388		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
intron-intron	ENST00000491104	ENST00000450363		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	SLC6A15	chr12	85264449	-
In-frame	ENST00000331830	ENST00000263946		TCGA	RV	SARC	TCGA-DX-A3U6-01A	CNTN2	chr1	205022383	+	PKP1	chr1	201263070	+
In-frame	ENST00000331830	ENST00000367324		TCGA	RV	SARC	TCGA-DX-A3U6-01A	CNTN2	chr1	205022383	+	PKP1	chr1	201263070	+
In-frame	ENST00000331830	ENST00000352845		TCGA	RV	SARC	TCGA-DX-A3U6-01A	CNTN2	chr1	205022383	+	PKP1	chr1	201263070	+
5CDS-intron	ENST00000331830	ENST00000475988		TCGA	RV	SARC	TCGA-DX-A3U6-01A	CNTN2	chr1	205022383	+	PKP1	chr1	201263070	+
5CDS-5UTR	ENST00000602281	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000602281	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000602281	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000602281	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000602281	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000602281	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-5UTR	ENST00000539444	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-5UTR	ENST00000539444	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-5UTR	ENST00000539444	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-intron	ENST00000539444	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-intron	ENST00000539444	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-intron	ENST00000539444	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-5UTR	ENST00000602873	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-5UTR	ENST00000602873	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-5UTR	ENST00000602873	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-intron	ENST00000602873	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-intron	ENST00000602873	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
3UTR-intron	ENST00000602873	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000366633	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000366633	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000366633	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000366633	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000366633	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000366633	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000366636	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000366636	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000366636	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000366636	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000366636	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000366636	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000535983	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000535983	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000535983	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000535983	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000535983	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000535983	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000537876	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000537876	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000537876	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000537876	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000537876	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000537876	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5UTR-5UTR	ENST00000366637	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5UTR-5UTR	ENST00000366637	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5UTR-5UTR	ENST00000366637	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5UTR-intron	ENST00000366637	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5UTR-intron	ENST00000366637	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5UTR-intron	ENST00000366637	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000439617	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000439617	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-5UTR	ENST00000439617	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000439617	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000439617	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
5CDS-intron	ENST00000439617	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000427560	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000427560	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000427560	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000427560	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000427560	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000427560	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000317586	ENST00000540418		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000317586	ENST00000303145		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-5UTR	ENST00000317586	ENST00000411698		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000317586	ENST00000393543		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000317586	ENST00000430606		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-intron	ENST00000317586	ENST00000545724		TCGA	RV	SARC	TCGA-DX-A7EI-01A	DISC1	chr1	231954263	+	MDM1	chr12	68715408	-
intron-3CDS	ENST00000441293	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000441293	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-3CDS	ENST00000314728	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-intron	ENST00000314728	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-3CDS	ENST00000347697	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-intron	ENST00000347697	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-3CDS	ENST00000395618	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-intron	ENST00000395618	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-3CDS	ENST00000575595	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
5UTR-intron	ENST00000575595	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-3CDS	ENST00000395620	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000395620	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-3CDS	ENST00000395626	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000395626	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-3CDS	ENST00000571254	ENST00000326291		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
intron-intron	ENST00000571254	ENST00000489922		TCGA	RV	SARC	TCGA-LI-A9QH-01A	EPN2	chr17	19140844	+	PIBF1	chr13	73467922	+
In-frame	ENST00000373314	ENST00000438132		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373314	ENST00000542263		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373314	ENST00000417362		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373314	ENST00000251143		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373314	ENST00000543152		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373314	ENST00000448695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000373314	ENST00000544275		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000373314	ENST00000538853		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373312	ENST00000438132		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373312	ENST00000542263		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373312	ENST00000417362		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373312	ENST00000251143		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373312	ENST00000543152		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
In-frame	ENST00000373312	ENST00000448695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000373312	ENST00000544275		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
5CDS-intron	ENST00000373312	ENST00000538853		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-3CDS	ENST00000468379	ENST00000438132		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-3CDS	ENST00000468379	ENST00000542263		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-3CDS	ENST00000468379	ENST00000417362		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-3CDS	ENST00000468379	ENST00000251143		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-3CDS	ENST00000468379	ENST00000543152		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-3CDS	ENST00000468379	ENST00000448695		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-intron	ENST00000468379	ENST00000544275		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
intron-intron	ENST00000468379	ENST00000538853		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FAM129B	chr9	130285958	-	C16orf62	chr16	19702675	+
5CDS-5UTR	ENST00000492622	ENST00000378434		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-5UTR	ENST00000492622	ENST00000345941		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-intron	ENST00000492622	ENST00000465365		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-5UTR	ENST00000541916	ENST00000378434		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-5UTR	ENST00000541916	ENST00000345941		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-intron	ENST00000541916	ENST00000465365		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-5UTR	ENST00000398316	ENST00000378434		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-5UTR	ENST00000398316	ENST00000345941		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
5CDS-intron	ENST00000398316	ENST00000465365		TCGA	RV	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48991456	-
In-frame	ENST00000253778	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
In-frame	ENST00000253778	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
In-frame	ENST00000253778	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-intron	ENST00000253778	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
5CDS-5UTR	ENST00000253778	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-3CDS	ENST00000520165	ENST00000549396		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-3CDS	ENST00000520165	ENST00000550584		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-3CDS	ENST00000520165	ENST00000549325		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000545296		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000550359		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000407050		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000333447		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000548586		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000443686		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000552948		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-intron	ENST00000520165	ENST00000541570		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
intron-5UTR	ENST00000520165	ENST00000541017		TCGA	RV	SARC	TCGA-3B-A9HS-01A	GFPT2	chr5	179757700	-	PPFIA2	chr12	81747118	-
Frame-shit	ENST00000403681	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000403681	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000403681	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000403681	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000403681	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000403681	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000403681	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000403681	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000403681	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000541363	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000541363	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000541363	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393577	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000393577	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000393577	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000393578	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000393578	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000393578	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000425208	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000425208	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000425208	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000536545	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000536545	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000536545	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000395487		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000429094		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000551601		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000452445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000549027		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000333837		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000354636	ENST00000437801		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000354636	ENST00000547172		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
5CDS-intron	ENST00000354636	ENST00000548826		TCGA	RV	SARC	TCGA-3B-A9HL-01A	HMGA2	chr12	66232349	+	NELL2	chr12	45097637	-
Frame-shit	ENST00000314256	ENST00000294818		TCGA	RV	SARC	TCGA-3B-A9HI-01A	KIAA0195	chr17	73468010	+	LRRC52	chr1	165532742	+
Frame-shit	ENST00000579208	ENST00000294818		TCGA	RV	SARC	TCGA-3B-A9HI-01A	KIAA0195	chr17	73468010	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000375248	ENST00000294818		TCGA	RV	SARC	TCGA-3B-A9HI-01A	KIAA0195	chr17	73468010	+	LRRC52	chr1	165532742	+
intron-3CDS	ENST00000583795	ENST00000294818		TCGA	RV	SARC	TCGA-3B-A9HI-01A	KIAA0195	chr17	73468010	+	LRRC52	chr1	165532742	+
Frame-shit	ENST00000546244	ENST00000267260		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
5CDS-intron	ENST00000546244	ENST00000537597		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
Frame-shit	ENST00000343810	ENST00000267260		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
5CDS-intron	ENST00000343810	ENST00000537597		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
In-frame	ENST00000550165	ENST00000267260		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
5CDS-intron	ENST00000550165	ENST00000537597		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
5UTR-3CDS	ENST00000547182	ENST00000267260		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
5UTR-intron	ENST00000547182	ENST00000537597		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
Frame-shit	ENST00000357123	ENST00000267260		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
5CDS-intron	ENST00000357123	ENST00000537597		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MCRS1	chr12	49956784	-	SRRM4	chr12	119594300	+
intron-3CDS	ENST00000540418	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000540418	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000540418	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000540418	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-intron	ENST00000540418	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-intron	ENST00000540418	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000303145	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000303145	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000303145	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000303145	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5CDS-intron	ENST00000303145	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5CDS-intron	ENST00000303145	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000411698	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000411698	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000411698	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
Frame-shit	ENST00000411698	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5CDS-intron	ENST00000411698	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5CDS-intron	ENST00000411698	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000393543	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000393543	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000393543	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000393543	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-intron	ENST00000393543	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-intron	ENST00000393543	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000430606	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000430606	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000430606	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-3CDS	ENST00000430606	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-intron	ENST00000430606	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
intron-intron	ENST00000430606	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5UTR-3CDS	ENST00000545724	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5UTR-3CDS	ENST00000545724	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5UTR-3CDS	ENST00000545724	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5UTR-3CDS	ENST00000545724	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5UTR-intron	ENST00000545724	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5UTR-intron	ENST00000545724	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MDM1	chr12	68720437	-	NAV3	chr12	78594253	+
5CDS-3UTR	ENST00000263268	ENST00000336338		TCGA	RV	SARC	TCGA-IS-A3K7-01A	MREG	chr2	216877956	-	SPAG17	chr1	118496672	-
5CDS-intron	ENST00000263268	ENST00000492438		TCGA	RV	SARC	TCGA-IS-A3K7-01A	MREG	chr2	216877956	-	SPAG17	chr1	118496672	-
5CDS-5UTR	ENST00000523821	ENST00000555159		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000523821	ENST00000555805		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000523821	ENST00000554643		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000523821	ENST00000554150		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-intron	ENST00000523821	ENST00000556481		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000523821	ENST00000322165		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000522822	ENST00000555159		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000522822	ENST00000555805		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000522822	ENST00000554643		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000522822	ENST00000554150		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-intron	ENST00000522822	ENST00000556481		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000522822	ENST00000322165		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000524341	ENST00000555159		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000524341	ENST00000555805		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000524341	ENST00000554643		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000524341	ENST00000554150		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-intron	ENST00000524341	ENST00000556481		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000524341	ENST00000322165		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000287025	ENST00000555159		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000287025	ENST00000555805		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000287025	ENST00000554643		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000287025	ENST00000554150		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-intron	ENST00000287025	ENST00000556481		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
5CDS-5UTR	ENST00000287025	ENST00000322165		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MTERFD1	chr8	97263134	-	HSD17B6	chr12	57167618	+
Frame-shit	ENST00000280285	ENST00000367872		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
Frame-shit	ENST00000280285	ENST00000367870		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
5CDS-3UTR	ENST00000280285	ENST00000491055		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
Frame-shit	ENST00000382142	ENST00000367872		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
Frame-shit	ENST00000382142	ENST00000367870		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
5CDS-3UTR	ENST00000382142	ENST00000491055		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
Frame-shit	ENST00000264934	ENST00000367872		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
Frame-shit	ENST00000264934	ENST00000367870		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
5CDS-3UTR	ENST00000264934	ENST00000491055		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
intron-3CDS	ENST00000510216	ENST00000367872		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
intron-3CDS	ENST00000510216	ENST00000367870		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
intron-3UTR	ENST00000510216	ENST00000491055		TCGA	RV	SARC	TCGA-X6-A8C2-01A	MTMR12	chr5	32312864	-	MAEL	chr1	166961923	+
5CDS-5UTR	ENST00000357731	ENST00000357206		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000357731	ENST00000287727		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000357731	ENST00000371591		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000357731	ENST00000469134		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-5UTR	ENST00000306821	ENST00000357206		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-5UTR	ENST00000306821	ENST00000287727		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-intron	ENST00000306821	ENST00000371591		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-intron	ENST00000306821	ENST00000469134		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000434200	ENST00000357206		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000434200	ENST00000287727		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000434200	ENST00000371591		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000434200	ENST00000469134		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-5UTR	ENST00000467479	ENST00000357206		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-5UTR	ENST00000467479	ENST00000287727		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-intron	ENST00000467479	ENST00000371591		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
intron-intron	ENST00000467479	ENST00000469134		TCGA	RV	SARC	TCGA-DX-AB36-01A	NEGR1	chr1	72748002	-	ZFYVE9	chr1	52682041	+
Frame-shit	ENST00000374791	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374791	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374791	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374791	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374791	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374791	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
Frame-shit	ENST00000539799	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000539799	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000539799	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000539799	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000539799	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000539799	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
Frame-shit	ENST00000427481	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000427481	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000427481	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000427481	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000427481	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000427481	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
Frame-shit	ENST00000374786	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374786	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374786	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374786	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374786	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374786	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
Frame-shit	ENST00000425719	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000425719	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000425719	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000425719	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000425719	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000425719	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
Frame-shit	ENST00000374784	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374784	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374784	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374784	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374784	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
5CDS-intron	ENST00000374784	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
intron-3CDS	ENST00000474900	ENST00000260197		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
intron-intron	ENST00000474900	ENST00000532451		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
intron-intron	ENST00000474900	ENST00000525532		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
intron-intron	ENST00000474900	ENST00000532694		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
intron-intron	ENST00000474900	ENST00000534286		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
intron-intron	ENST00000474900	ENST00000527934		TCGA	RV	SARC	TCGA-K1-A6RV-01A	NTM	chr11	131781542	+	SORL1	chr11	121475822	+
In-frame	ENST00000393249	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
5CDS-intron	ENST00000393249	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
In-frame	ENST00000261183	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
5CDS-intron	ENST00000261183	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
Frame-shit	ENST00000393250	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
5CDS-intron	ENST00000393250	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
intron-3CDS	ENST00000552178	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
intron-intron	ENST00000552178	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	PTPRQ	chr12	80998838	+
5CDS-5UTR	ENST00000359926	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000359926	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000359926	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000359926	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
5CDS-intron	ENST00000359926	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000371015	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000371015	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000371015	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000371015	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000371015	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000395639	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000395639	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000395639	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000395639	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000395639	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000541461	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000541461	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000541461	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000541461	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000541461	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000355648	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000355648	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000355648	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000355648	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000355648	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000395636	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000395636	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000395636	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000395636	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000395636	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000361300	ENST00000371440		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000361300	ENST00000371435		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000361300	ENST00000395961		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000361300	ENST00000434986		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
intron-intron	ENST00000361300	ENST00000411563		TCGA	RV	SARC	TCGA-SI-AA8B-01A	PHACTR3	chr20	58152672	+	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000227524	ENST00000299481		TCGA	RV	SARC	TCGA-X6-A8C3-01A	PRPF19	chr11	60668054	-	NLRP14	chr11	7059797	+
5CDS-3UTR	ENST00000257836	ENST00000527171		TCGA	RV	SARC	TCGA-DX-A1KU-01A	PRRG4	chr11	32861785	+	ZNF215	chr11	6953325	+
5CDS-5UTR	ENST00000257836	ENST00000278319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	PRRG4	chr11	32861785	+	ZNF215	chr11	6953325	+
5CDS-5UTR	ENST00000257836	ENST00000414517		TCGA	RV	SARC	TCGA-DX-A1KU-01A	PRRG4	chr11	32861785	+	ZNF215	chr11	6953325	+
5CDS-intron	ENST00000257836	ENST00000529903		TCGA	RV	SARC	TCGA-DX-A1KU-01A	PRRG4	chr11	32861785	+	ZNF215	chr11	6953325	+
Frame-shit	ENST00000368802	ENST00000368761		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
Frame-shit	ENST00000368802	ENST00000359831		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-5UTR	ENST00000368802	ENST00000392556		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-5UTR	ENST00000368802	ENST00000340026		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-intron	ENST00000368802	ENST00000368731		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-intron	ENST00000368802	ENST00000368735		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
Frame-shit	ENST00000368805	ENST00000368761		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
Frame-shit	ENST00000368805	ENST00000359831		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-5UTR	ENST00000368805	ENST00000392556		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-5UTR	ENST00000368805	ENST00000340026		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-intron	ENST00000368805	ENST00000368731		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-intron	ENST00000368805	ENST00000368735		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5UTR-3CDS	ENST00000435970	ENST00000368761		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5UTR-3CDS	ENST00000435970	ENST00000359831		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5UTR-5UTR	ENST00000435970	ENST00000392556		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5UTR-5UTR	ENST00000435970	ENST00000340026		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5UTR-intron	ENST00000435970	ENST00000368731		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5UTR-intron	ENST00000435970	ENST00000368735		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
Frame-shit	ENST00000358835	ENST00000368761		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
Frame-shit	ENST00000358835	ENST00000359831		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-5UTR	ENST00000358835	ENST00000392556		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-5UTR	ENST00000358835	ENST00000340026		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-intron	ENST00000358835	ENST00000368731		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
5CDS-intron	ENST00000358835	ENST00000368735		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
intron-3CDS	ENST00000462119	ENST00000368761		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
intron-3CDS	ENST00000462119	ENST00000359831		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
intron-5UTR	ENST00000462119	ENST00000392556		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
intron-5UTR	ENST00000462119	ENST00000340026		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
intron-intron	ENST00000462119	ENST00000368731		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
intron-intron	ENST00000462119	ENST00000368735		TCGA	RV	SARC	TCGA-DX-A1L0-01A	REV3L	chr6	111803953	-	TRAF3IP2	chr6	111897024	-
Frame-shit	ENST00000336617	ENST00000231420		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RNASEH2B	chr13	51484276	+	AGXT2	chr5	35014224	-
Frame-shit	ENST00000422660	ENST00000231420		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RNASEH2B	chr13	51484276	+	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000495244	ENST00000231420		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RNASEH2B	chr13	51484276	+	AGXT2	chr5	35014224	-
Frame-shit	ENST00000521654	ENST00000356698		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
Frame-shit	ENST00000521654	ENST00000368317		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
5CDS-intron	ENST00000521654	ENST00000485757		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
Frame-shit	ENST00000560949	ENST00000356698		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
Frame-shit	ENST00000560949	ENST00000368317		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
5CDS-intron	ENST00000560949	ENST00000485757		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000454842	ENST00000356698		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000454842	ENST00000368317		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-intron	ENST00000454842	ENST00000485757		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000368414	ENST00000356698		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000368414	ENST00000368317		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-intron	ENST00000368414	ENST00000485757		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000359704	ENST00000356698		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000359704	ENST00000368317		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-intron	ENST00000359704	ENST00000485757		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000275184	ENST00000356698		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-3CDS	ENST00000275184	ENST00000368317		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
intron-intron	ENST00000275184	ENST00000485757		TCGA	RV	SARC	TCGA-3B-A9HZ-01A	RNF217	chr6	125284572	+	RSPO3	chr6	127516968	+
Frame-shit	ENST00000370010	ENST00000370598		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000370010	ENST00000238918		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000370010	ENST00000546190		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000370014	ENST00000370598		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000370014	ENST00000238918		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000370014	ENST00000546190		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000447266	ENST00000370598		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000447266	ENST00000238918		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000447266	ENST00000546190		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
intron-3CDS	ENST00000541192	ENST00000370598		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
intron-3CDS	ENST00000541192	ENST00000238918		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
intron-3CDS	ENST00000541192	ENST00000546190		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000327284	ENST00000370598		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000327284	ENST00000238918		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
Frame-shit	ENST00000327284	ENST00000546190		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
intron-3CDS	ENST00000436928	ENST00000370598		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
intron-3CDS	ENST00000436928	ENST00000238918		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
intron-3CDS	ENST00000436928	ENST00000546190		TCGA	RV	SARC	TCGA-DX-AATS-01A	SENP6	chr6	76312292	+	BAI3	chr6	70064125	+
In-frame	ENST00000230640	ENST00000217246		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
In-frame	ENST00000230640	ENST00000310348		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000230640	ENST00000464883		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000230640	ENST00000402914		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000230640	ENST00000378058		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000230640	ENST00000407045		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
In-frame	ENST00000545714	ENST00000217246		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
In-frame	ENST00000545714	ENST00000310348		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000545714	ENST00000464883		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000545714	ENST00000402914		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000545714	ENST00000378058		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
5CDS-intron	ENST00000545714	ENST00000407045		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
intron-3CDS	ENST00000504388	ENST00000217246		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
intron-3CDS	ENST00000504388	ENST00000310348		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
intron-intron	ENST00000504388	ENST00000464883		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
intron-intron	ENST00000504388	ENST00000402914		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
intron-intron	ENST00000504388	ENST00000378058		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
intron-intron	ENST00000504388	ENST00000407045		TCGA	RV	SARC	TCGA-MB-A5Y9-01A	SKIV2L2	chr5	54718810	+	MACROD2	chr20	15866409	+
Frame-shit	ENST00000377524	ENST00000261172		TCGA	RV	SARC	TCGA-DX-A1L4-01A	STAM	chr10	17686378	+	EPYC	chr12	91372039	-
5UTR-3CDS	ENST00000540523	ENST00000261172		TCGA	RV	SARC	TCGA-DX-A1L4-01A	STAM	chr10	17686378	+	EPYC	chr12	91372039	-
5UTR-3CDS	ENST00000393330	ENST00000229134		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71676496	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000247829	ENST00000229134		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71676496	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000546561	ENST00000229134		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71676496	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000552128	ENST00000229134		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71676496	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000552786	ENST00000229134		TCGA	RV	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71676496	-	IL26	chr12	68595863	-
Frame-shit	ENST00000321867	ENST00000550703		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
In-frame	ENST00000321867	ENST00000551590		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
In-frame	ENST00000321867	ENST00000397655		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
5CDS-intron	ENST00000321867	ENST00000471804		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
5CDS-5UTR	ENST00000321867	ENST00000377654		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
5CDS-5UTR	ENST00000321867	ENST00000397659		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
5CDS-3UTR	ENST00000321867	ENST00000551555		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-3CDS	ENST00000540647	ENST00000550703		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-3CDS	ENST00000540647	ENST00000551590		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-3CDS	ENST00000540647	ENST00000397655		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-intron	ENST00000540647	ENST00000471804		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-5UTR	ENST00000540647	ENST00000377654		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-5UTR	ENST00000540647	ENST00000397659		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
intron-3UTR	ENST00000540647	ENST00000551555		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ULK1	chr12	132399966	+	TCTN1	chr12	111066572	+
5UTR-3CDS	ENST00000382869	ENST00000414242		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382869	ENST00000361479		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-intron	ENST00000382869	ENST00000496525		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382881	ENST00000414242		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382881	ENST00000361479		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-intron	ENST00000382881	ENST00000496525		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382874	ENST00000414242		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382874	ENST00000361479		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-intron	ENST00000382874	ENST00000496525		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382871	ENST00000414242		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-3CDS	ENST00000382871	ENST00000361479		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5UTR-intron	ENST00000382871	ENST00000496525		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
intron-3CDS	ENST00000382883	ENST00000414242		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
intron-3CDS	ENST00000382883	ENST00000361479		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
intron-intron	ENST00000382883	ENST00000496525		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
intron-3CDS	ENST00000494061	ENST00000414242		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
intron-3CDS	ENST00000494061	ENST00000361479		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
intron-intron	ENST00000494061	ENST00000496525		TCGA	RV	SARC	TCGA-WK-A8XX-01A	ZMYM2	chr13	20534166	+	MPHOSPH8	chr13	20216255	+
5CDS-intron	ENST00000222388	ENST00000463000		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-intron	ENST00000222388	ENST00000334493		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-5UTR	ENST00000222388	ENST00000477459		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-5UTR	ENST00000222388	ENST00000469830		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-intron	ENST00000287844	ENST00000463000		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-intron	ENST00000287844	ENST00000334493		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-5UTR	ENST00000287844	ENST00000477459		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
5CDS-5UTR	ENST00000287844	ENST00000469830		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
intron-intron	ENST00000473874	ENST00000463000		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
intron-intron	ENST00000473874	ENST00000334493		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
intron-5UTR	ENST00000473874	ENST00000477459		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
intron-5UTR	ENST00000473874	ENST00000469830		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ABCF2	chr7	150911965	-	WDR86	chr7	151093282	-
Frame-shit	ENST00000520381	ENST00000262962		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ARFGEF1	chr8	68123718	-	CCDC94	chr19	4261991	+
Frame-shit	ENST00000262215	ENST00000262962		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ARFGEF1	chr8	68123718	-	CCDC94	chr19	4261991	+
intron-3CDS	ENST00000517955	ENST00000262962		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ARFGEF1	chr8	68123718	-	CCDC94	chr19	4261991	+
Frame-shit	ENST00000518230	ENST00000262962		TCGA	RV	SARC	TCGA-DX-A23Z-01A	ARFGEF1	chr8	68123718	-	CCDC94	chr19	4261991	+
In-frame	ENST00000286800	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
In-frame	ENST00000286800	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
In-frame	ENST00000286800	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
5CDS-intron	ENST00000286800	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
In-frame	ENST00000399921	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
In-frame	ENST00000399921	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
In-frame	ENST00000399921	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
5CDS-intron	ENST00000399921	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
intron-3CDS	ENST00000462262	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
intron-3CDS	ENST00000462262	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
intron-3CDS	ENST00000462262	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
intron-intron	ENST00000462262	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	BACH1	chr21	30702014	+	OSBPL8	chr12	76752591	-
5UTR-3CDS	ENST00000435869	ENST00000325006		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-3CDS	ENST00000435869	ENST00000446544		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-3CDS	ENST00000435869	ENST00000531335		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-3CDS	ENST00000435869	ENST00000474594		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-3CDS	ENST00000435869	ENST00000446212		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-3CDS	ENST00000435869	ENST00000490911		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-intron	ENST00000435869	ENST00000472554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000338588	ENST00000325006		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000338588	ENST00000446544		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000338588	ENST00000531335		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000338588	ENST00000474594		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000338588	ENST00000446212		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000338588	ENST00000490911		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5CDS-intron	ENST00000338588	ENST00000472554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000415751	ENST00000325006		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000415751	ENST00000446544		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000415751	ENST00000531335		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000415751	ENST00000474594		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000415751	ENST00000446212		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
In-frame	ENST00000415751	ENST00000490911		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5CDS-intron	ENST00000415751	ENST00000472554		TCGA	RV	SARC	TCGA-DX-A1KX-01A	FAM180A	chr7	135421847	-	AHCYL2	chr7	129019479	+
5UTR-3CDS	ENST00000299293	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-3CDS	ENST00000299293	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000299293	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000299293	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000299293	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000299293	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-3CDS	ENST00000549921	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-3CDS	ENST00000549921	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000549921	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000549921	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000549921	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000549921	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000550389	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000550389	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000550389	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000550389	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000550389	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-intron	ENST00000550389	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-3CDS	ENST00000397997	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-3CDS	ENST00000397997	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000397997	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000397997	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000397997	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
5UTR-intron	ENST00000397997	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB35-01A	FRS2	chr12	69925836	+	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000575800	ENST00000331134		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
intron-3CDS	ENST00000575800	ENST00000374747		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
intron-5UTR	ENST00000575800	ENST00000539314		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
intron-intron	ENST00000575800	ENST00000572760		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
intron-intron	ENST00000575800	ENST00000573876		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
intron-intron	ENST00000575800	ENST00000574344		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
In-frame	ENST00000301329	ENST00000331134		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
In-frame	ENST00000301329	ENST00000374747		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000301329	ENST00000539314		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000301329	ENST00000572760		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000301329	ENST00000573876		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000301329	ENST00000574344		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
In-frame	ENST00000301328	ENST00000331134		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
In-frame	ENST00000301328	ENST00000374747		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000301328	ENST00000539314		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000301328	ENST00000572760		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000301328	ENST00000573876		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000301328	ENST00000574344		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
In-frame	ENST00000536578	ENST00000331134		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
In-frame	ENST00000536578	ENST00000374747		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000536578	ENST00000539314		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000536578	ENST00000572760		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000536578	ENST00000573876		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000536578	ENST00000574344		TCGA	RV	SARC	TCGA-JV-A5VE-01A	GLOD4	chr17	673109	-	NPLOC4	chr17	79589304	-
Frame-shit	ENST00000262493	ENST00000471389		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262493	ENST00000394647		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262493	ENST00000431610		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262493	ENST00000460382		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262493	ENST00000463855		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
5CDS-intron	ENST00000262493	ENST00000472835		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262494	ENST00000471389		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262494	ENST00000394647		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262494	ENST00000431610		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262494	ENST00000460382		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
Frame-shit	ENST00000262494	ENST00000463855		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
5CDS-intron	ENST00000262494	ENST00000472835		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
3UTR-3CDS	ENST00000569295	ENST00000471389		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
3UTR-3CDS	ENST00000569295	ENST00000394647		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
3UTR-3CDS	ENST00000569295	ENST00000431610		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
3UTR-3CDS	ENST00000569295	ENST00000460382		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
3UTR-3CDS	ENST00000569295	ENST00000463855		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
3UTR-intron	ENST00000569295	ENST00000472835		TCGA	RV	SARC	TCGA-WP-A9GB-01A	GNAO1	chr16	56226528	+	FTO	chr16	53967897	+
In-frame	ENST00000398016	ENST00000250863		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
In-frame	ENST00000398016	ENST00000399444		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
In-frame	ENST00000359742	ENST00000250863		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
In-frame	ENST00000359742	ENST00000399444		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
In-frame	ENST00000286445	ENST00000250863		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
In-frame	ENST00000286445	ENST00000399444		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
intron-3CDS	ENST00000542021	ENST00000250863		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
intron-3CDS	ENST00000542021	ENST00000399444		TCGA	RV	SARC	TCGA-DX-A1KY-01A	GRIP1	chr12	66770954	-	DAZL	chr3	16633655	-
5CDS-intron	ENST00000403681	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000403681	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000403681	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000403681	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000403681	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000541363	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000541363	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000541363	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000541363	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000541363	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393577	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393577	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000393577	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393577	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393577	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393578	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393578	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000393578	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393578	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000393578	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000425208	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000425208	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000425208	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000425208	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000425208	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000536545	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000536545	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000536545	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000536545	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000536545	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000354636	ENST00000426335		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000354636	ENST00000524782		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-5UTR	ENST00000354636	ENST00000395449		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000354636	ENST00000319543		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
5CDS-intron	ENST00000354636	ENST00000419701		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66219161	+	ARFGAP2	chr11	47193884	-
intron-3CDS	ENST00000378535	ENST00000377602		TCGA	RV	SARC	TCGA-DX-A1L4-01A	KITLG	chr12	88974041	-	ST8SIA6	chr10	17373551	-
Frame-shit	ENST00000228280	ENST00000377602		TCGA	RV	SARC	TCGA-DX-A1L4-01A	KITLG	chr12	88974041	-	ST8SIA6	chr10	17373551	-
Frame-shit	ENST00000347404	ENST00000377602		TCGA	RV	SARC	TCGA-DX-A1L4-01A	KITLG	chr12	88974041	-	ST8SIA6	chr10	17373551	-
5UTR-3CDS	ENST00000357116	ENST00000377602		TCGA	RV	SARC	TCGA-DX-A1L4-01A	KITLG	chr12	88974041	-	ST8SIA6	chr10	17373551	-
Frame-shit	ENST00000425217	ENST00000547691		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000425217	ENST00000552810		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000425217	ENST00000397838		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000425217	ENST00000309041		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000339824	ENST00000547691		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000339824	ENST00000552810		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000339824	ENST00000397838		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000339824	ENST00000309041		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000302438	ENST00000547691		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000302438	ENST00000552810		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000302438	ENST00000397838		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000302438	ENST00000309041		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000545002	ENST00000547691		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000545002	ENST00000552810		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000545002	ENST00000397838		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
intron-3CDS	ENST00000545002	ENST00000309041		TCGA	RV	SARC	TCGA-3B-A9HO-01A	KSR2	chr12	118198816	-	CEP290	chr12	88444210	-
Frame-shit	ENST00000421865	ENST00000413795		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
Frame-shit	ENST00000421865	ENST00000369138		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
Frame-shit	ENST00000421865	ENST00000421544		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
Frame-shit	ENST00000421865	ENST00000358361		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
Frame-shit	ENST00000421865	ENST00000318991		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
Frame-shit	ENST00000421865	ENST00000369137		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
Frame-shit	ENST00000421865	ENST00000369134		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000413795		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000369138		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000421544		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000358361		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000318991		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000369137		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
intron-3CDS	ENST00000498257	ENST00000369134		TCGA	RV	SARC	TCGA-HB-A3YV-01A	LAMA2	chr6	129513998	+	GRIK2	chr6	102124498	+
In-frame	ENST00000368468	ENST00000358075		TCGA	RV	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	MAGT1	chrX	77086392	-
5CDS-intron	ENST00000368468	ENST00000373336		TCGA	RV	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	MAGT1	chrX	77086392	-
In-frame	ENST00000368466	ENST00000358075		TCGA	RV	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	MAGT1	chrX	77086392	-
5CDS-intron	ENST00000368466	ENST00000373336		TCGA	RV	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	MAGT1	chrX	77086392	-
intron-3CDS	ENST00000508736	ENST00000360469		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000508736	ENST00000543233		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000548825	ENST00000360469		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000548825	ENST00000543233		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000261897	ENST00000360469		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000261897	ENST00000543233		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000380281	ENST00000360469		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
intron-3CDS	ENST00000380281	ENST00000543233		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PRPF40B	chr12	49962506	+	CDH4	chr20	60448784	+
5UTR-intron	ENST00000588552	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5UTR-intron	ENST00000588552	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5UTR-intron	ENST00000588552	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000262963	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000262963	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000262963	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000372412	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000372412	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000372412	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000348075	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000348075	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000348075	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000357368	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000357368	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000357368	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000353284	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000353284	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000353284	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000587303	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000587303	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000587303	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000588012	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000588012	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000588012	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000592099	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000592099	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000592099	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000590509	ENST00000588651		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000590509	ENST00000361113		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5CDS-intron	ENST00000590509	ENST00000588174		TCGA	RV	SARC	TCGA-DX-A6Z0-01A	PTPRS	chr19	5274210	-	ZNF627	chr19	11725342	+
5UTR-intron	ENST00000444631	ENST00000394182		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-intron	ENST00000444631	ENST00000322569		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-intron	ENST00000444631	ENST00000548629		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-intron	ENST00000444631	ENST00000409200		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-5UTR	ENST00000444631	ENST00000547487		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000394182		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000322569		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000548629		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000409200		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-5UTR	ENST00000336133	ENST00000547487		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000394182		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000322569		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000548629		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000409200		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-5UTR	ENST00000552080	ENST00000547487		TCGA	RV	SARC	TCGA-HB-A43Z-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
Frame-shit	ENST00000228284	ENST00000553106		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
Frame-shit	ENST00000228284	ENST00000307000		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
5CDS-5UTR	ENST00000228284	ENST00000551988		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
Frame-shit	ENST00000431469	ENST00000553106		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
Frame-shit	ENST00000431469	ENST00000307000		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
5CDS-5UTR	ENST00000431469	ENST00000551988		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
5UTR-3CDS	ENST00000552221	ENST00000553106		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
5UTR-3CDS	ENST00000552221	ENST00000307000		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
5UTR-5UTR	ENST00000552221	ENST00000551988		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
intron-3CDS	ENST00000546611	ENST00000553106		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
intron-3CDS	ENST00000546611	ENST00000307000		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
intron-5UTR	ENST00000546611	ENST00000551988		TCGA	RV	SARC	TCGA-DX-A3U5-01A	SART3	chr12	108941663	-	PAH	chr12	103288696	-
Frame-shit	ENST00000393330	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000393330	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000393330	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5CDS-intron	ENST00000393330	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000247829	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000247829	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000247829	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5CDS-intron	ENST00000247829	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
In-frame	ENST00000546561	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
In-frame	ENST00000546561	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
In-frame	ENST00000546561	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5CDS-intron	ENST00000546561	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
intron-3CDS	ENST00000552128	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
intron-3CDS	ENST00000552128	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
intron-3CDS	ENST00000552128	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
intron-intron	ENST00000552128	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5UTR-3CDS	ENST00000552786	ENST00000393249		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5UTR-3CDS	ENST00000552786	ENST00000261183		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5UTR-3CDS	ENST00000552786	ENST00000393250		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
5UTR-intron	ENST00000552786	ENST00000552178		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TSPAN8	chr12	71551399	-	OSBPL8	chr12	76752591	-
Frame-shit	ENST00000367545	ENST00000205386		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
Frame-shit	ENST00000367545	ENST00000388781		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
Frame-shit	ENST00000367545	ENST00000388780		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
5CDS-intron	ENST00000367545	ENST00000418464		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
5CDS-intron	ENST00000367545	ENST00000414450		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
5CDS-intron	ENST00000367545	ENST00000483484		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-3CDS	ENST00000367526	ENST00000205386		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-3CDS	ENST00000367526	ENST00000388781		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-3CDS	ENST00000367526	ENST00000388780		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-intron	ENST00000367526	ENST00000418464		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-intron	ENST00000367526	ENST00000414450		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-intron	ENST00000367526	ENST00000483484		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-3CDS	ENST00000480333	ENST00000205386		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-3CDS	ENST00000480333	ENST00000388781		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-3CDS	ENST00000480333	ENST00000388780		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-intron	ENST00000480333	ENST00000418464		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-intron	ENST00000480333	ENST00000414450		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
intron-intron	ENST00000480333	ENST00000483484		TCGA	RV	SARC	TCGA-DX-A6BH-01A	UTRN	chr6	144769905	+	LAMB4	chr7	107678040	-
5CDS-intron	ENST00000311573	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000311573	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000311573	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000311573	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000311573	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000311573	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000311573	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368340	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368340	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368340	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368340	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368340	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368340	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368340	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000347088	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000347088	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000347088	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000347088	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000347088	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000347088	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000347088	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000361831	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000361831	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000361831	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000361831	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000361831	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000361831	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000361831	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000355499	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000355499	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000355499	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000355499	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000355499	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000355499	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000355499	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000404643	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000404643	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000404643	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000404643	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000404643	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000404643	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000404643	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000407221	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000407221	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000407221	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000407221	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000407221	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000407221	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000407221	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000359205	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000359205	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000359205	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000359205	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000359205	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000359205	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000359205	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000295566	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000295566	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000295566	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000295566	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000295566	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000295566	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000295566	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368330	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368330	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368330	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368330	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368330	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368330	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368330	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368339	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368339	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368339	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368339	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000368339	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368339	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000368339	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000535662	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000535662	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000535662	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000535662	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000535662	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000535662	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000535662	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000405763	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000405763	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000405763	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000405763	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000405763	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000405763	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-intron	ENST00000405763	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000438245	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000438245	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000438245	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-5UTR	ENST00000438245	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-5UTR	ENST00000438245	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000438245	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000438245	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000476093	ENST00000368315		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000476093	ENST00000313695		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000476093	ENST00000361247		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-5UTR	ENST00000476093	ENST00000368316		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-5UTR	ENST00000476093	ENST00000462460		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000476093	ENST00000477754		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
intron-intron	ENST00000476093	ENST00000313667		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	YY1AP1	chr1	155638418	-	ARHGEF2	chr1	155952991	-
5CDS-5UTR	ENST00000230122	ENST00000368622		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ZBTB24	chr6	109797378	-	STK32C	chr10	134059459	-
5CDS-5UTR	ENST00000230122	ENST00000368625		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ZBTB24	chr6	109797378	-	STK32C	chr10	134059459	-
intron-3CDS	ENST00000359019	ENST00000260229		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZDHHC17	chr12	77158592	+	MMP27	chr11	102573849	-
intron-3CDS	ENST00000334822	ENST00000260229		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZDHHC17	chr12	77158592	+	MMP27	chr11	102573849	-
intron-3CDS	ENST00000426126	ENST00000260229		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZDHHC17	chr12	77158592	+	MMP27	chr11	102573849	-
intron-3CDS	ENST00000550789	ENST00000260229		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ZDHHC17	chr12	77158592	+	MMP27	chr11	102573849	-
5CDS-5UTR	ENST00000355458	ENST00000296577		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5CDS-3UTR	ENST00000355458	ENST00000502803		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5CDS-5UTR	ENST00000264990	ENST00000296577		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5CDS-3UTR	ENST00000264990	ENST00000502803		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5UTR-5UTR	ENST00000545291	ENST00000296577		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5UTR-3UTR	ENST00000545291	ENST00000502803		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5CDS-5UTR	ENST00000481970	ENST00000296577		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
5CDS-3UTR	ENST00000481970	ENST00000502803		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
intron-5UTR	ENST00000489991	ENST00000296577		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
intron-3UTR	ENST00000489991	ENST00000502803		TCGA	RV	SARC	TCGA-DX-A3UA-01A	ACAD11	chr3	132360816	-	ABCE1	chr4	146025538	+
Frame-shit	ENST00000083182	ENST00000409792		TCGA	RV	SARC	TCGA-DX-A6YS-01A	APPBP2	chr17	58571827	-	SETD2	chr3	47061330	-
5CDS-intron	ENST00000083182	ENST00000492397		TCGA	RV	SARC	TCGA-DX-A6YS-01A	APPBP2	chr17	58571827	-	SETD2	chr3	47061330	-
intron-3CDS	ENST00000592995	ENST00000409792		TCGA	RV	SARC	TCGA-DX-A6YS-01A	APPBP2	chr17	58571827	-	SETD2	chr3	47061330	-
intron-intron	ENST00000592995	ENST00000492397		TCGA	RV	SARC	TCGA-DX-A6YS-01A	APPBP2	chr17	58571827	-	SETD2	chr3	47061330	-
3UTR-3CDS	ENST00000331595	ENST00000369002		TCGA	RV	SARC	TCGA-LI-A67I-01A	BGN	chrX	152775004	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000331595	ENST00000460009		TCGA	RV	SARC	TCGA-LI-A67I-01A	BGN	chrX	152775004	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000480756	ENST00000369002		TCGA	RV	SARC	TCGA-LI-A67I-01A	BGN	chrX	152775004	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000480756	ENST00000460009		TCGA	RV	SARC	TCGA-LI-A67I-01A	BGN	chrX	152775004	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000342704	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
In-frame	ENST00000342704	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
Frame-shit	ENST00000342704	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
In-frame	ENST00000342704	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000375279	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000375279	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000375279	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
5UTR-3CDS	ENST00000375279	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000344201	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000344201	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000344201	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000344201	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397798	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397798	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397798	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397798	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000346541	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000346541	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000346541	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000346541	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397800	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397800	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397800	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000397800	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000492345	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000492345	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000492345	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000492345	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000359606	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000359606	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000359606	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000359606	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000491618	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000491618	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000491618	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000491618	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000543126	ENST00000376062		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000543126	ENST00000376055		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000543126	ENST00000307677		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
intron-3CDS	ENST00000543126	ENST00000420653		TCGA	RV	SARC	TCGA-DX-A8BS-01A	CBFA2T2	chr20	32078107	+	BCL2L1	chr20	30253889	-
3UTR-intron	ENST00000557165	ENST00000395255		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
3UTR-intron	ENST00000557165	ENST00000410046		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
3UTR-intron	ENST00000557165	ENST00000395251		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
3UTR-intron	ENST00000557165	ENST00000395254		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
3UTR-intron	ENST00000557165	ENST00000466727		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
3UTR-intron	ENST00000557165	ENST00000395249		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000389879	ENST00000395255		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000389879	ENST00000410046		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000389879	ENST00000395251		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000389879	ENST00000395254		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000389879	ENST00000466727		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000389879	ENST00000395249		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000555049	ENST00000395255		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000555049	ENST00000410046		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000555049	ENST00000395251		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000555049	ENST00000395254		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000555049	ENST00000466727		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
5CDS-intron	ENST00000555049	ENST00000395249		TCGA	RV	SARC	TCGA-DX-A6BF-01A	CCNK	chr14	99961966	+	ZNF365	chr10	64425889	+
Frame-shit	ENST00000547691	ENST00000436874		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000547691	ENST00000261219		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000547691	ENST00000356859		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
Frame-shit	ENST00000552810	ENST00000436874		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000552810	ENST00000261219		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000552810	ENST00000356859		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
Frame-shit	ENST00000397838	ENST00000436874		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000397838	ENST00000261219		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000397838	ENST00000356859		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
Frame-shit	ENST00000309041	ENST00000436874		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000309041	ENST00000261219		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
5CDS-5UTR	ENST00000309041	ENST00000356859		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CEP290	chr12	88486458	-	VEZT	chr12	95645716	+
intron-3CDS	ENST00000332592	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000332592	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000332592	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000332592	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-intron	ENST00000332592	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000478244	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000478244	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000478244	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000478244	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
5CDS-intron	ENST00000478244	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000375399	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000375399	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000375399	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000375399	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
5CDS-intron	ENST00000375399	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000460318	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000460318	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000460318	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000460318	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
intron-intron	ENST00000460318	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	DCUN1D2	chr13	114134890	-	ATP11A	chr13	113439449	+
Frame-shit	ENST00000398309	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000398309	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
In-frame	ENST00000376104	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000376104	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000418306	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000418306	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000280241	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000280241	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000543673	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000543673	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5UTR-3CDS	ENST00000376106	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5UTR-intron	ENST00000376106	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000330014	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000330014	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5UTR-3CDS	ENST00000537455	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5UTR-intron	ENST00000537455	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000524982	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000524982	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000532653	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000532653	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000531015	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000531015	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000398301	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000398301	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-3CDS	ENST00000426717	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-intron	ENST00000426717	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-3CDS	ENST00000404783	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-intron	ENST00000404783	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-3CDS	ENST00000398304	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-intron	ENST00000398304	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-3CDS	ENST00000530800	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-intron	ENST00000530800	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-3CDS	ENST00000472545	ENST00000300145		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
intron-intron	ENST00000472545	ENST00000546709		TCGA	RV	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83874504	-	XRCC6BP1	chr12	58339411	+
In-frame	ENST00000358155	ENST00000333850		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
5CDS-intron	ENST00000358155	ENST00000546576		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
intron-3CDS	ENST00000367733	ENST00000333850		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
intron-intron	ENST00000367733	ENST00000546576		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
In-frame	ENST00000355305	ENST00000333850		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
5CDS-intron	ENST00000355305	ENST00000546576		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
In-frame	ENST00000367731	ENST00000333850		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
5CDS-intron	ENST00000367731	ENST00000546576		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
In-frame	ENST00000520906	ENST00000333850		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
5CDS-intron	ENST00000520906	ENST00000546576		TCGA	RV	SARC	TCGA-DX-A3U6-01A	DNM3	chr1	172222822	+	TPH2	chr12	72388219	+
In-frame	ENST00000354422	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000354422	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
In-frame	ENST00000338353	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000338353	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FAM78B	chr1	166135223	-	RAB3IP	chr12	70206744	+
In-frame	ENST00000358691	ENST00000582888		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000358691	ENST00000602676		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000358691	ENST00000322297		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000358691	ENST00000583542		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000358691	ENST00000588673		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000580168	ENST00000582888		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000580168	ENST00000602676		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000580168	ENST00000322297		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000580168	ENST00000583542		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000580168	ENST00000588673		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
5UTR-3CDS	ENST00000580662	ENST00000582888		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
5UTR-3CDS	ENST00000580662	ENST00000602676		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
5UTR-3CDS	ENST00000580662	ENST00000322297		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
5UTR-3CDS	ENST00000580662	ENST00000583542		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
5UTR-3CDS	ENST00000580662	ENST00000588673		TCGA	RV	SARC	TCGA-N1-A6IA-01A	HELZ	chr17	65199435	-	OAZ1	chr19	2272734	+
In-frame	ENST00000393561	ENST00000379028		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
In-frame	ENST00000393561	ENST00000413765		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
In-frame	ENST00000393561	ENST00000351718		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
In-frame	ENST00000393561	ENST00000379024		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
In-frame	ENST00000393561	ENST00000379022		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
In-frame	ENST00000393561	ENST00000425651		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
5CDS-intron	ENST00000393561	ENST00000522550		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000222399	ENST00000379028		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000222399	ENST00000413765		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000222399	ENST00000351718		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000222399	ENST00000379024		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000222399	ENST00000379022		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000222399	ENST00000425651		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
5CDS-intron	ENST00000222399	ENST00000522550		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000393560	ENST00000379028		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000393560	ENST00000413765		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000393560	ENST00000351718		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000393560	ENST00000379024		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000393560	ENST00000379022		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
Frame-shit	ENST00000393560	ENST00000425651		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
5CDS-intron	ENST00000393560	ENST00000522550		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-3CDS	ENST00000474380	ENST00000379028		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-3CDS	ENST00000474380	ENST00000413765		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-3CDS	ENST00000474380	ENST00000351718		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-3CDS	ENST00000474380	ENST00000379024		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-3CDS	ENST00000474380	ENST00000379022		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-3CDS	ENST00000474380	ENST00000425651		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
intron-intron	ENST00000474380	ENST00000522550		TCGA	RV	SARC	TCGA-X6-A8C6-01A	LAMB1	chr7	107626467	-	NRCAM	chr7	107800937	-
In-frame	ENST00000546323	ENST00000335312		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000546323	ENST00000539785		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000546323	ENST00000589578		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000546323	ENST00000537021		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
5CDS-5UTR	ENST00000546323	ENST00000587482		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
3UTR-3CDS	ENST00000536503	ENST00000335312		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
3UTR-3CDS	ENST00000536503	ENST00000539785		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
3UTR-3CDS	ENST00000536503	ENST00000589578		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
3UTR-3CDS	ENST00000536503	ENST00000537021		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
3UTR-5UTR	ENST00000536503	ENST00000587482		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000282892	ENST00000335312		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000282892	ENST00000539785		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000282892	ENST00000589578		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
In-frame	ENST00000282892	ENST00000537021		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
5CDS-5UTR	ENST00000282892	ENST00000587482		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	MED21	chr12	27175554	+	PIP5K1C	chr19	3661999	-
Frame-shit	ENST00000319080	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
Frame-shit	ENST00000319080	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
Frame-shit	ENST00000319080	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
Frame-shit	ENST00000319080	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
Frame-shit	ENST00000319080	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
5CDS-intron	ENST00000319080	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000538698	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000538698	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000538698	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000538698	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000538698	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-intron	ENST00000538698	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000377037	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000377037	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000377037	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000377037	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000377037	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-intron	ENST00000377037	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000535996	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000535996	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000535996	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000535996	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000535996	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
intron-intron	ENST00000535996	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	ASH2L	chr8	37996334	+
In-frame	ENST00000535651	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-intron	ENST00000535651	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-5UTR	ENST00000535651	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
In-frame	ENST00000433979	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-intron	ENST00000433979	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-5UTR	ENST00000433979	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
In-frame	ENST00000538779	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-intron	ENST00000538779	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-5UTR	ENST00000538779	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
In-frame	ENST00000266497	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-intron	ENST00000266497	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
5CDS-5UTR	ENST00000266497	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
3UTR-3CDS	ENST00000536967	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
3UTR-intron	ENST00000536967	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
3UTR-5UTR	ENST00000536967	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PIK3C2G	chr12	18435693	+	CTDSP2	chr12	58218102	-
Frame-shit	ENST00000253329	ENST00000229332		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
Frame-shit	ENST00000253329	ENST00000345999		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
Frame-shit	ENST00000253329	ENST00000360500		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
Frame-shit	ENST00000253329	ENST00000352620		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
intron-3CDS	ENST00000340881	ENST00000229332		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
intron-3CDS	ENST00000340881	ENST00000345999		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
intron-3CDS	ENST00000340881	ENST00000360500		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
intron-3CDS	ENST00000340881	ENST00000352620		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPIL4	chr6	149846279	-	CLEC4A	chr12	8288181	+
In-frame	ENST00000377200	ENST00000541509		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
In-frame	ENST00000377200	ENST00000265382		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
5CDS-intron	ENST00000377200	ENST00000474356		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
In-frame	ENST00000340434	ENST00000541509		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
In-frame	ENST00000340434	ENST00000265382		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
5CDS-intron	ENST00000340434	ENST00000474356		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
intron-3CDS	ENST00000472967	ENST00000541509		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
intron-3CDS	ENST00000472967	ENST00000265382		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
intron-intron	ENST00000472967	ENST00000474356		TCGA	RV	SARC	TCGA-DX-A48N-01A	PTAR1	chr9	72347055	-	PIP5K1B	chr9	71503897	+
Frame-shit	ENST00000398004	ENST00000529410		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
Frame-shit	ENST00000398004	ENST00000533560		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
Frame-shit	ENST00000398004	ENST00000361794		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
Frame-shit	ENST00000398004	ENST00000368139		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
Frame-shit	ENST00000398004	ENST00000526019		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
Frame-shit	ENST00000398004	ENST00000368136		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
3UTR-3CDS	ENST00000538043	ENST00000529410		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
3UTR-3CDS	ENST00000538043	ENST00000533560		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
3UTR-3CDS	ENST00000538043	ENST00000361794		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
3UTR-3CDS	ENST00000538043	ENST00000368139		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
3UTR-3CDS	ENST00000538043	ENST00000526019		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
3UTR-3CDS	ENST00000538043	ENST00000368136		TCGA	RV	SARC	TCGA-3B-A9HS-01A	SLC35E3	chr12	69145970	+	L3MBTL3	chr6	130454597	+
In-frame	ENST00000327367	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000327367	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000327367	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000327367	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000559092	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000559092	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000559092	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000559092	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000540846	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000540846	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000540846	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000540846	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000439724	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000439724	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000439724	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000439724	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000537194	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000537194	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000537194	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000537194	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-02A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000359930	ENST00000481847		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000359930	ENST00000243938		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000359930	ENST00000372632		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000359930	ENST00000372630		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000484875	ENST00000481847		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000484875	ENST00000243938		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000484875	ENST00000372632		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000484875	ENST00000372630		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000361612	ENST00000481847		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000361612	ENST00000243938		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000361612	ENST00000372632		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000361612	ENST00000372630		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000467815	ENST00000481847		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000467815	ENST00000243938		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000467815	ENST00000372632		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5CDS-5UTR	ENST00000467815	ENST00000372630		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5UTR-5UTR	ENST00000478766	ENST00000481847		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5UTR-5UTR	ENST00000478766	ENST00000243938		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5UTR-5UTR	ENST00000478766	ENST00000372632		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
5UTR-5UTR	ENST00000478766	ENST00000372630		TCGA	RV	SARC	TCGA-DX-AB2P-01A	SULF2	chr20	46365447	-	WFDC3	chr20	44404241	-
intron-3CDS	ENST00000309134	ENST00000380738		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000309134	ENST00000380733		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000309134	ENST00000380715		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000309134	ENST00000380716		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000309134	ENST00000397519		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-intron	ENST00000309134	ENST00000484265		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
In-frame	ENST00000534025	ENST00000380738		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
In-frame	ENST00000534025	ENST00000380733		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
In-frame	ENST00000534025	ENST00000380715		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
In-frame	ENST00000534025	ENST00000380716		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
In-frame	ENST00000534025	ENST00000397519		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5CDS-intron	ENST00000534025	ENST00000484265		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-3CDS	ENST00000525069	ENST00000380738		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-3CDS	ENST00000525069	ENST00000380733		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-3CDS	ENST00000525069	ENST00000380715		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-3CDS	ENST00000525069	ENST00000380716		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-3CDS	ENST00000525069	ENST00000397519		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-intron	ENST00000525069	ENST00000484265		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000528117	ENST00000380738		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000528117	ENST00000380733		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000528117	ENST00000380715		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000528117	ENST00000380716		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-3CDS	ENST00000528117	ENST00000397519		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
intron-intron	ENST00000528117	ENST00000484265		TCGA	RV	SARC	TCGA-VT-A80G-01A	TMEM9B	chr11	8983639	-	PSIP1	chr9	15490122	-
5UTR-5UTR	ENST00000541110	ENST00000507065		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-intron	ENST00000541110	ENST00000296862		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000541110	ENST00000398742		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000372917	ENST00000507065		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-intron	ENST00000372917	ENST00000296862		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000372917	ENST00000398742		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000372922	ENST00000507065		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-intron	ENST00000372922	ENST00000296862		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000372922	ENST00000398742		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000340840	ENST00000507065		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-intron	ENST00000340840	ENST00000296862		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000340840	ENST00000398742		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000354325	ENST00000507065		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-intron	ENST00000354325	ENST00000296862		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
5UTR-5UTR	ENST00000354325	ENST00000398742		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TRERF1	chr6	42418915	-	GPR111	chr6	47641127	+
Frame-shit	ENST00000560955	ENST00000441824		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
Frame-shit	ENST00000560955	ENST00000290871		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
5CDS-3UTR	ENST00000560955	ENST00000569996		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
Frame-shit	ENST00000313478	ENST00000441824		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
Frame-shit	ENST00000313478	ENST00000290871		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
5CDS-3UTR	ENST00000313478	ENST00000569996		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
intron-3CDS	ENST00000561443	ENST00000441824		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
intron-3CDS	ENST00000561443	ENST00000290871		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
intron-3UTR	ENST00000561443	ENST00000569996		TCGA	RV	SARC	TCGA-DX-A8BS-01A	TRPM7	chr15	50955164	-	TEPP	chr16	58018207	+
Frame-shit	ENST00000397906	ENST00000332050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
Frame-shit	ENST00000397906	ENST00000397938		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
Frame-shit	ENST00000397906	ENST00000406548		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
Frame-shit	ENST00000397906	ENST00000331029		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
Frame-shit	ENST00000397906	ENST00000414183		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000397906	ENST00000333395		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
5CDS-intron	ENST00000397906	ENST00000332035		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000490475	ENST00000332050		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000490475	ENST00000397938		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000490475	ENST00000406548		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000490475	ENST00000331029		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-3CDS	ENST00000490475	ENST00000414183		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-intron	ENST00000490475	ENST00000333395		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
intron-intron	ENST00000490475	ENST00000332035		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TTC28	chr22	29025540	-	EWSR1	chr22	29694723	+
Frame-shit	ENST00000358430	ENST00000329399		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TXLNB	chr6	139609613	-	PDLIM1	chr10	96998442	-
5CDS-5UTR	ENST00000358430	ENST00000477757		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TXLNB	chr6	139609613	-	PDLIM1	chr10	96998442	-
5CDS-intron	ENST00000400301	ENST00000477496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000460856		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000240874		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000360013		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000393496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000291478		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000428018		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000459915		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000400301	ENST00000462213		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000477496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000460856		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000240874		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000360013		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000393496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000291478		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000428018		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000459915		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000308271	ENST00000462213		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000477496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000460856		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000240874		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000360013		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000393496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000291478		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000428018		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000459915		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000374732	ENST00000462213		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000477496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000460856		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000240874		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000360013		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000393496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000291478		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000428018		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000459915		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
5CDS-intron	ENST00000529637	ENST00000462213		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000477496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000460856		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000240874		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000360013		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000393496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000291478		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000428018		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000459915		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000479177	ENST00000462213		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000477496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000460856		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000240874		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000360013		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000393496		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000291478		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000428018		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000459915		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
intron-intron	ENST00000421625	ENST00000462213		TCGA	RV	SARC	TCGA-WP-A9GB-01A	USP48	chr1	22027991	-	KALRN	chr3	124281690	+
Frame-shit	ENST00000392587	ENST00000360370		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392587	ENST00000346785		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392587	ENST00000383598		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392587	ENST00000315891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392587	ENST00000508835		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
5CDS-intron	ENST00000392587	ENST00000514023		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392586	ENST00000360370		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392586	ENST00000346785		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392586	ENST00000383598		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392586	ENST00000315891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392586	ENST00000508835		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
5CDS-intron	ENST00000392586	ENST00000514023		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392588	ENST00000360370		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392588	ENST00000346785		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392588	ENST00000383598		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392588	ENST00000315891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392588	ENST00000508835		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
5CDS-intron	ENST00000392588	ENST00000514023		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392589	ENST00000360370		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392589	ENST00000346785		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392589	ENST00000383598		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392589	ENST00000315891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000392589	ENST00000508835		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
5CDS-intron	ENST00000392589	ENST00000514023		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
In-frame	ENST00000359451	ENST00000360370		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
In-frame	ENST00000359451	ENST00000346785		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
In-frame	ENST00000359451	ENST00000383598		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
In-frame	ENST00000359451	ENST00000315891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
In-frame	ENST00000359451	ENST00000508835		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
5CDS-intron	ENST00000359451	ENST00000514023		TCGA	RV	SARC	TCGA-FX-A3NK-01A	WASF1	chr6	110434529	-	SLC41A3	chr3	125731592	-
Frame-shit	ENST00000233055	ENST00000406610		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
5CDS-intron	ENST00000233055	ENST00000462231		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
5CDS-intron	ENST00000233055	ENST00000349953		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
5CDS-intron	ENST00000233055	ENST00000358768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
5CDS-intron	ENST00000233055	ENST00000351153		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
5CDS-3UTR	ENST00000233055	ENST00000488622		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
intron-3CDS	ENST00000462702	ENST00000406610		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
intron-intron	ENST00000462702	ENST00000462231		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
intron-intron	ENST00000462702	ENST00000349953		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
intron-intron	ENST00000462702	ENST00000358768		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
intron-intron	ENST00000462702	ENST00000351153		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
intron-3UTR	ENST00000462702	ENST00000488622		TCGA	RV	SARC	TCGA-DX-A1KY-01A	WDFY1	chr2	224809865	-	PARD3B	chr2	206364620	+
5CDS-5UTR	ENST00000285021	ENST00000515359		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000285021	ENST00000308775		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000285021	ENST00000541308		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000285021	ENST00000539901		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000285021	ENST00000545947		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000285021	ENST00000538711		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-3UTR	ENST00000285021	ENST00000479935		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000449060	ENST00000515359		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000449060	ENST00000308775		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000449060	ENST00000541308		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000449060	ENST00000539901		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000449060	ENST00000545947		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000449060	ENST00000538711		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-3UTR	ENST00000449060	ENST00000479935		TCGA	RV	SARC	TCGA-HS-A5N9-01A	XPC	chr3	14219966	-	DAG1	chr3	49547852	+
5CDS-5UTR	ENST00000359019	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000359019	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000359019	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000359019	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000359019	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000359019	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000359019	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000359019	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000359019	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000334822	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000334822	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000334822	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000334822	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000334822	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000334822	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000334822	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000334822	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000334822	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000426126	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000426126	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000426126	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000426126	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000426126	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000426126	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000426126	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000426126	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000426126	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000550789	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000550789	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000550789	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000550789	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000550789	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-5UTR	ENST00000550789	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-intron	ENST00000550789	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-intron	ENST00000550789	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-intron	ENST00000550789	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ZDHHC17	chr12	77158109	+	RAB3IP	chr12	70149164	+
intron-3CDS	ENST00000485760	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000485760	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000371236	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000371236	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000371234	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
5UTR-3CDS	ENST00000371234	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000420954	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000420954	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000439789	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000439789	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000414851	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000414851	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000371231	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000371231	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000371230	ENST00000258534		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000371230	ENST00000544152		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	DAB1	chr1	58715912	-	DRAM1	chr12	102291641	+
Frame-shit	ENST00000316623	ENST00000360876		TCGA	RV	SARC	TCGA-SG-A849-01A	FBN1	chr15	48757765	-	EIF3B	chr7	2415024	+
Frame-shit	ENST00000316623	ENST00000397011		TCGA	RV	SARC	TCGA-SG-A849-01A	FBN1	chr15	48757765	-	EIF3B	chr7	2415024	+
intron-3CDS	ENST00000561429	ENST00000360876		TCGA	RV	SARC	TCGA-SG-A849-01A	FBN1	chr15	48757765	-	EIF3B	chr7	2415024	+
intron-3CDS	ENST00000561429	ENST00000397011		TCGA	RV	SARC	TCGA-SG-A849-01A	FBN1	chr15	48757765	-	EIF3B	chr7	2415024	+
intron-3CDS	ENST00000560355	ENST00000360876		TCGA	RV	SARC	TCGA-SG-A849-01A	FBN1	chr15	48757765	-	EIF3B	chr7	2415024	+
intron-3CDS	ENST00000560355	ENST00000397011		TCGA	RV	SARC	TCGA-SG-A849-01A	FBN1	chr15	48757765	-	EIF3B	chr7	2415024	+
5UTR-3CDS	ENST00000299293	ENST00000549856		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
5UTR-3CDS	ENST00000299293	ENST00000344636		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
5UTR-3CDS	ENST00000549921	ENST00000549856		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
5UTR-3CDS	ENST00000549921	ENST00000344636		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
5UTR-3CDS	ENST00000550389	ENST00000549856		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
5UTR-3CDS	ENST00000550389	ENST00000344636		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
intron-3CDS	ENST00000397997	ENST00000549856		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
intron-3CDS	ENST00000397997	ENST00000344636		TCGA	RV	SARC	TCGA-DX-A23R-01A	FRS2	chr12	69864310	+	PLEKHG7	chr12	93134629	+
5UTR-3CDS	ENST00000303991	ENST00000606498		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GPRIN1	chr5	176037000	-	TM2D1	chr1	62166697	-
5UTR-3CDS	ENST00000303991	ENST00000294613		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GPRIN1	chr5	176037000	-	TM2D1	chr1	62166697	-
5UTR-3CDS	ENST00000303991	ENST00000371180		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GPRIN1	chr5	176037000	-	TM2D1	chr1	62166697	-
5UTR-5UTR	ENST00000303991	ENST00000472989		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GPRIN1	chr5	176037000	-	TM2D1	chr1	62166697	-
5UTR-5UTR	ENST00000303991	ENST00000371177		TCGA	RV	SARC	TCGA-DX-AB3A-01A	GPRIN1	chr5	176037000	-	TM2D1	chr1	62166697	-
Frame-shit	ENST00000375991	ENST00000517970		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000375991	ENST00000349423		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000375991	ENST00000341922		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000375991	ENST00000265428		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
5CDS-intron	ENST00000375991	ENST00000523863		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000452279	ENST00000517970		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000452279	ENST00000349423		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000452279	ENST00000341922		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000452279	ENST00000265428		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
5CDS-intron	ENST00000452279	ENST00000523863		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
intron-3CDS	ENST00000311534	ENST00000517970		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
intron-3CDS	ENST00000311534	ENST00000349423		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
intron-3CDS	ENST00000311534	ENST00000341922		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
intron-3CDS	ENST00000311534	ENST00000265428		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
intron-intron	ENST00000311534	ENST00000523863		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000326094	ENST00000517970		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000326094	ENST00000349423		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000326094	ENST00000341922		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
Frame-shit	ENST00000326094	ENST00000265428		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
5CDS-intron	ENST00000326094	ENST00000523863		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ISCA1	chr9	88897293	-	WWP1	chr8	87447681	+
In-frame	ENST00000421865	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
In-frame	ENST00000421865	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
In-frame	ENST00000421865	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000421865	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000498257	ENST00000229179		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000498257	ENST00000378905		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000498257	ENST00000539906		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
intron-intron	ENST00000498257	ENST00000401003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LAMA2	chr6	129641800	+	NUP107	chr12	69135593	+
In-frame	ENST00000367321	ENST00000552912		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
In-frame	ENST00000367321	ENST00000242591		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
In-frame	ENST00000367321	ENST00000361948		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000367321	ENST00000549009		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
In-frame	ENST00000367307	ENST00000552912		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
In-frame	ENST00000367307	ENST00000242591		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
In-frame	ENST00000367307	ENST00000361948		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000367307	ENST00000549009		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000478643	ENST00000552912		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000478643	ENST00000242591		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000478643	ENST00000361948		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
intron-3UTR	ENST00000478643	ENST00000549009		TCGA	RV	SARC	TCGA-DX-A1L4-01A	MTHFD1L	chr6	151198962	+	IFT81	chr12	110600724	+
5UTR-3CDS	ENST00000318948	ENST00000303052		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
5UTR-3CDS	ENST00000318948	ENST00000607537		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
5UTR-3CDS	ENST00000318948	ENST00000303032		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
5UTR-3CDS	ENST00000400199	ENST00000303052		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
5UTR-3CDS	ENST00000400199	ENST00000607537		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
5UTR-3CDS	ENST00000400199	ENST00000303032		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
intron-3CDS	ENST00000400202	ENST00000303052		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
intron-3CDS	ENST00000400202	ENST00000607537		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
intron-3CDS	ENST00000400202	ENST00000303032		TCGA	RV	SARC	TCGA-QC-AA9N-01A	NRIP1	chr21	16415816	-	CSNK1G1	chr15	64508912	-
5CDS-intron	ENST00000545128	ENST00000473039		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000545128	ENST00000373624		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000545128	ENST00000542603		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000545128	ENST00000394219		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000545128	ENST00000373620		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-5UTR	ENST00000545128	ENST00000394215		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-5UTR	ENST00000545128	ENST00000373618		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376767	ENST00000473039		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376767	ENST00000373624		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376767	ENST00000542603		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376767	ENST00000394219		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376767	ENST00000373620		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-5UTR	ENST00000376767	ENST00000394215		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-5UTR	ENST00000376767	ENST00000373618		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376752	ENST00000473039		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376752	ENST00000373624		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376752	ENST00000542603		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376752	ENST00000394219		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000376752	ENST00000373620		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-5UTR	ENST00000376752	ENST00000394215		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-5UTR	ENST00000376752	ENST00000373618		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PCSK5	chr9	78641953	+	DENND1A	chr9	126641300	-
5CDS-intron	ENST00000566044	ENST00000546961		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000566044	ENST00000550891		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000566044	ENST00000354534		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000566044	ENST00000545061		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000455779	ENST00000546961		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000455779	ENST00000550891		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000455779	ENST00000354534		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000455779	ENST00000545061		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000299167	ENST00000546961		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000299167	ENST00000550891		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000299167	ENST00000354534		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000299167	ENST00000545061		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000323584	ENST00000546961		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000323584	ENST00000550891		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000323584	ENST00000354534		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
5CDS-intron	ENST00000323584	ENST00000545061		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
intron-intron	ENST00000567402	ENST00000546961		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
intron-intron	ENST00000567402	ENST00000550891		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
intron-intron	ENST00000567402	ENST00000354534		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
intron-intron	ENST00000567402	ENST00000545061		TCGA	RV	SARC	TCGA-DX-A23R-01A	PHKB	chr16	47730399	+	SCN8A	chr12	52077958	+
Frame-shit	ENST00000367669	ENST00000361719		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000367669	ENST00000392299		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000367669	ENST00000492807		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000367669	ENST00000355289		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000367669	ENST00000282753		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000367669	ENST00000507907		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000308769	ENST00000361719		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000308769	ENST00000392299		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000308769	ENST00000492807		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000308769	ENST00000355289		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000308769	ENST00000282753		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
Frame-shit	ENST00000308769	ENST00000507907		TCGA	RV	SARC	TCGA-DX-A6BH-01A	RFWD2	chr1	176153769	-	GRM1	chr6	146673386	+
5CDS-intron	ENST00000367225	ENST00000450793		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000538141		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000380180		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000318007		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000437932		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000317968		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000542407		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000508216		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000514743		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-3UTR	ENST00000367225	ENST00000380176		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000359265		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000512274		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000367225	ENST00000504489		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000450793		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000538141		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000380180		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000318007		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000437932		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000317968		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000542407		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000508216		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000514743		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-3UTR	ENST00000206262	ENST00000380176		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000359265		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000512274		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
5CDS-intron	ENST00000206262	ENST00000504489		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	RGS17	chr6	153365035	-	PDLIM5	chr4	95583573	+
In-frame	ENST00000330137	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000330137	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5CDS-intron	ENST00000330137	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000580541	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000580541	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000580541	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000578105	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000578105	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5CDS-intron	ENST00000578105	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5UTR-3CDS	ENST00000583927	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5UTR-3CDS	ENST00000583927	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5UTR-intron	ENST00000583927	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000581068	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000581068	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5CDS-intron	ENST00000581068	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000437036	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000437036	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000437036	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000583380	ENST00000184956		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000583380	ENST00000585976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
5CDS-intron	ENST00000583380	ENST00000585712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232492	-	HEATR6	chr17	58137457	-
In-frame	ENST00000449592	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
In-frame	ENST00000449592	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
In-frame	ENST00000449592	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
5CDS-intron	ENST00000449592	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
5UTR-3CDS	ENST00000540377	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
5UTR-3CDS	ENST00000540377	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
5UTR-3CDS	ENST00000540377	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
5UTR-intron	ENST00000540377	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
intron-3CDS	ENST00000538055	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
intron-3CDS	ENST00000538055	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
intron-3CDS	ENST00000538055	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
intron-intron	ENST00000538055	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A1KW-01A	TMEM120B	chr12	122211419	+	GRIP1	chr12	66773216	-
5CDS-intron	ENST00000437538	ENST00000395811		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000437538	ENST00000444976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000437538	ENST00000395804		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000437538	ENST00000341712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000437538	ENST00000395806		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000437538	ENST00000395807		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000579315	ENST00000395811		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000579315	ENST00000444976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000579315	ENST00000395804		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000579315	ENST00000341712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000579315	ENST00000395806		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000579315	ENST00000395807		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000261652	ENST00000395811		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000261652	ENST00000444976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000261652	ENST00000395804		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000261652	ENST00000341712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000261652	ENST00000395806		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000261652	ENST00000395807		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000583789	ENST00000395811		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000583789	ENST00000444976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000583789	ENST00000395804		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000583789	ENST00000341712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000583789	ENST00000395806		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5CDS-intron	ENST00000583789	ENST00000395807		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5UTR-intron	ENST00000581616	ENST00000395811		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5UTR-intron	ENST00000581616	ENST00000444976		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5UTR-intron	ENST00000581616	ENST00000395804		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5UTR-intron	ENST00000581616	ENST00000341712		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5UTR-intron	ENST00000581616	ENST00000395806		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
5UTR-intron	ENST00000581616	ENST00000395807		TCGA	RV	SARC	TCGA-DX-A3M1-01A	TNFRSF13B	chr17	16852052	-	MPRIP	chr17	16960950	+
intron-5UTR	ENST00000550574	ENST00000550831		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-intron	ENST00000550574	ENST00000355445		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000550574	ENST00000354825		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000550574	ENST00000437003		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000550574	ENST00000552374		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000550574	ENST00000549537		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-intron	ENST00000550574	ENST00000552839		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000541364	ENST00000550831		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-intron	ENST00000541364	ENST00000355445		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000541364	ENST00000354825		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000541364	ENST00000437003		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000541364	ENST00000552374		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-5UTR	ENST00000541364	ENST00000549537		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
intron-intron	ENST00000541364	ENST00000552839		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000301072	ENST00000550831		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-intron	ENST00000301072	ENST00000355445		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000301072	ENST00000354825		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000301072	ENST00000437003		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000301072	ENST00000552374		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000301072	ENST00000549537		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-intron	ENST00000301072	ENST00000552839		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000549183	ENST00000550831		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-intron	ENST00000549183	ENST00000355445		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000549183	ENST00000354825		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000549183	ENST00000437003		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000549183	ENST00000552374		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-5UTR	ENST00000549183	ENST00000549537		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-intron	ENST00000549183	ENST00000552839		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	TMEM116	chr12	112381173	-
5CDS-3UTR	ENST00000367455	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367455	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367455	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367455	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367455	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-3UTR	ENST00000367454	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367454	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367454	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367454	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367454	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-3UTR	ENST00000367451	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367451	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367451	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367451	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367451	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-3UTR	ENST00000367448	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367448	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367448	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367448	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367448	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-3UTR	ENST00000367449	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367449	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367449	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367449	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367449	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-3UTR	ENST00000367452	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367452	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367452	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367452	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000367452	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-3UTR	ENST00000530098	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000530098	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000530098	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000530098	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
5CDS-intron	ENST00000530098	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
intron-3UTR	ENST00000483156	ENST00000498289		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
intron-intron	ENST00000483156	ENST00000413811		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
intron-intron	ENST00000483156	ENST00000359326		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
intron-intron	ENST00000483156	ENST00000456684		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
intron-intron	ENST00000483156	ENST00000286031		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UCHL5	chr1	192990227	-	C1orf112	chr1	169818641	+
In-frame	ENST00000353364	ENST00000324472		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
5CDS-5UTR	ENST00000353364	ENST00000413230		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
In-frame	ENST00000280377	ENST00000324472		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
5CDS-5UTR	ENST00000280377	ENST00000413230		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
In-frame	ENST00000393654	ENST00000324472		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
5CDS-5UTR	ENST00000393654	ENST00000413230		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
intron-3CDS	ENST00000550632	ENST00000324472		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
intron-5UTR	ENST00000550632	ENST00000413230		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
In-frame	ENST00000312635	ENST00000324472		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
5CDS-5UTR	ENST00000312635	ENST00000413230		TCGA	RV	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63977616	-
In-frame	ENST00000407775	ENST00000267842		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
In-frame	ENST00000407775	ENST00000380902		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
5CDS-5UTR	ENST00000407775	ENST00000544960		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000520492	ENST00000267842		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000520492	ENST00000380902		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-5UTR	ENST00000520492	ENST00000544960		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000517361	ENST00000267842		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000517361	ENST00000380902		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-5UTR	ENST00000517361	ENST00000544960		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000522296	ENST00000267842		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000522296	ENST00000380902		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-5UTR	ENST00000522296	ENST00000544960		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000378472	ENST00000267842		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-3CDS	ENST00000378472	ENST00000380902		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
intron-5UTR	ENST00000378472	ENST00000544960		TCGA	RV	SARC	TCGA-DX-A8BX-01A	ZFPM2	chr8	106331209	+	SLC27A2	chr15	50489697	+
3UTR-intron	ENST00000538618	ENST00000551529		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
3UTR-intron	ENST00000538618	ENST00000256010		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
5CDS-intron	ENST00000392979	ENST00000551529		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
5CDS-intron	ENST00000392979	ENST00000256010		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
5UTR-intron	ENST00000299222	ENST00000551529		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
5UTR-intron	ENST00000299222	ENST00000256010		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
5CDS-intron	ENST00000392977	ENST00000551529		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
5CDS-intron	ENST00000392977	ENST00000256010		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
intron-intron	ENST00000550015	ENST00000551529		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
intron-intron	ENST00000550015	ENST00000256010		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
intron-intron	ENST00000551148	ENST00000551529		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
intron-intron	ENST00000551148	ENST00000256010		TCGA	RV	SARC	TCGA-DX-A1L4-01A	ANO4	chr12	101381448	+	NTS	chr12	86272123	+
In-frame	ENST00000395184	ENST00000395169		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395184	ENST00000359221		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000395184	ENST00000361569		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395184	ENST00000395166		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395184	ENST00000449047		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395184	ENST00000395161		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000395184	ENST00000513839		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000395184	ENST00000395157		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000395184	ENST00000395160		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000503995	ENST00000395169		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000503995	ENST00000359221		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000503995	ENST00000361569		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000503995	ENST00000395166		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000503995	ENST00000449047		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000503995	ENST00000395161		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000503995	ENST00000513839		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000503995	ENST00000395157		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000503995	ENST00000395160		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000506421	ENST00000395169		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000506421	ENST00000359221		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000506421	ENST00000361569		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000506421	ENST00000395166		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000506421	ENST00000449047		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-3CDS	ENST00000506421	ENST00000395161		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-intron	ENST00000506421	ENST00000513839		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-intron	ENST00000506421	ENST00000395157		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
intron-intron	ENST00000506421	ENST00000395160		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000395183	ENST00000395169		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395183	ENST00000359221		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000395183	ENST00000361569		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395183	ENST00000395166		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395183	ENST00000449047		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000395183	ENST00000395161		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000395183	ENST00000513839		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000395183	ENST00000395157		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000395183	ENST00000395160		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000264343	ENST00000395169		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000264343	ENST00000359221		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000264343	ENST00000361569		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000264343	ENST00000395166		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000264343	ENST00000449047		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
Frame-shit	ENST00000264343	ENST00000395161		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000264343	ENST00000513839		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000264343	ENST00000395157		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
5CDS-intron	ENST00000264343	ENST00000395160		TCGA	RV	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938528	-
In-frame	ENST00000255608	ENST00000264501		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
In-frame	ENST00000255608	ENST00000455637		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
In-frame	ENST00000255608	ENST00000388738		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
5CDS-intron	ENST00000255608	ENST00000495260		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
intron-3CDS	ENST00000590646	ENST00000264501		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
intron-3CDS	ENST00000590646	ENST00000455637		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
intron-3CDS	ENST00000590646	ENST00000388738		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
intron-intron	ENST00000590646	ENST00000495260		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD2	chr19	1990003	-	KIAA1109	chr4	123107191	+
5UTR-3CDS	ENST00000228741	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000228741	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000228741	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000228741	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000552142	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000552142	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000552142	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5UTR-3CDS	ENST00000552142	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000549529	ENST00000420886		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000549529	ENST00000267176		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000549529	ENST00000602750		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
intron-3CDS	ENST00000549529	ENST00000602398		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ELK3	chr12	96588483	+	SBNO1	chr12	123834988	-
5CDS-5UTR	ENST00000504595	ENST00000264463		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FBXL7	chr5	15616181	+	CDH10	chr5	24593722	-
5CDS-intron	ENST00000504595	ENST00000502921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FBXL7	chr5	15616181	+	CDH10	chr5	24593722	-
5UTR-5UTR	ENST00000510662	ENST00000264463		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FBXL7	chr5	15616181	+	CDH10	chr5	24593722	-
5UTR-intron	ENST00000510662	ENST00000502921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FBXL7	chr5	15616181	+	CDH10	chr5	24593722	-
5CDS-5UTR	ENST00000329673	ENST00000264463		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FBXL7	chr5	15616181	+	CDH10	chr5	24593722	-
5CDS-intron	ENST00000329673	ENST00000502921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FBXL7	chr5	15616181	+	CDH10	chr5	24593722	-
5CDS-5UTR	ENST00000275364	ENST00000409469		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000275364	ENST00000602748		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000275364	ENST00000325222		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000544127	ENST00000409469		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000544127	ENST00000602748		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000544127	ENST00000325222		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000491117	ENST00000409469		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000491117	ENST00000602748		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000491117	ENST00000325222		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000407904	ENST00000409469		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000407904	ENST00000602748		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5CDS-5UTR	ENST00000407904	ENST00000325222		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000407653	ENST00000409469		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000407653	ENST00000602748		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000407653	ENST00000325222		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000396960	ENST00000409469		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000396960	ENST00000602748		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000396960	ENST00000325222		TCGA	RV	SARC	TCGA-JV-A75J-01A	GNA12	chr7	2834562	-	CUL1	chr7	148427054	+
5UTR-3CDS	ENST00000358767	ENST00000304623		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000358767	ENST00000359640		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000358767	ENST00000511377		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000358767	ENST00000458100		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000358767	ENST00000503622		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-5UTR	ENST00000358767	ENST00000495388		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000546225	ENST00000304623		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000546225	ENST00000359640		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000546225	ENST00000511377		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000546225	ENST00000458100		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-3CDS	ENST00000546225	ENST00000503622		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5UTR-5UTR	ENST00000546225	ENST00000495388		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000335894	ENST00000304623		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000335894	ENST00000359640		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000335894	ENST00000511377		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000335894	ENST00000458100		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000335894	ENST00000503622		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5CDS-5UTR	ENST00000335894	ENST00000495388		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000360277	ENST00000304623		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000360277	ENST00000359640		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000360277	ENST00000511377		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000360277	ENST00000458100		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000360277	ENST00000503622		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-5UTR	ENST00000360277	ENST00000495388		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000512104	ENST00000304623		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000512104	ENST00000359640		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000512104	ENST00000511377		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000512104	ENST00000458100		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
In-frame	ENST00000512104	ENST00000503622		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5CDS-5UTR	ENST00000512104	ENST00000495388		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000560790	ENST00000304623		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000560790	ENST00000359640		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000560790	ENST00000511377		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000560790	ENST00000458100		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-3CDS	ENST00000560790	ENST00000503622		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
intron-5UTR	ENST00000560790	ENST00000495388		TCGA	RV	SARC	TCGA-DX-A1L3-01A	IQCH	chr15	67553732	+	CTNND2	chr5	11199773	-
5CDS-5UTR	ENST00000418530	ENST00000382062		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-3UTR	ENST00000418530	ENST00000487365		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000418530	ENST00000236693		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000418530	ENST00000349077		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000418530	ENST00000418971		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000418530	ENST00000403096		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000418530	ENST00000402922		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000418530	ENST00000402794		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000418530	ENST00000404205		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000256707	ENST00000382062		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-3UTR	ENST00000256707	ENST00000487365		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000256707	ENST00000236693		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000256707	ENST00000349077		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000256707	ENST00000418971		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000256707	ENST00000403096		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000256707	ENST00000402922		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000256707	ENST00000402794		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000256707	ENST00000404205		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000427284	ENST00000382062		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-3UTR	ENST00000427284	ENST00000487365		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000427284	ENST00000236693		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000427284	ENST00000349077		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000427284	ENST00000418971		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000427284	ENST00000403096		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000427284	ENST00000402922		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000427284	ENST00000402794		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000427284	ENST00000404205		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000473731	ENST00000382062		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-3UTR	ENST00000473731	ENST00000487365		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000473731	ENST00000236693		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000473731	ENST00000349077		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-5UTR	ENST00000473731	ENST00000418971		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000473731	ENST00000403096		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000473731	ENST00000402922		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000473731	ENST00000402794		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5CDS-intron	ENST00000473731	ENST00000404205		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000319688	ENST00000382062		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-3UTR	ENST00000319688	ENST00000487365		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000319688	ENST00000236693		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000319688	ENST00000349077		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000319688	ENST00000418971		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000319688	ENST00000403096		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000319688	ENST00000402922		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000319688	ENST00000402794		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000319688	ENST00000404205		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000436566	ENST00000382062		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-3UTR	ENST00000436566	ENST00000487365		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000436566	ENST00000236693		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000436566	ENST00000349077		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-5UTR	ENST00000436566	ENST00000418971		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000436566	ENST00000403096		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000436566	ENST00000402922		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000436566	ENST00000402794		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
intron-intron	ENST00000436566	ENST00000404205		TCGA	RV	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	COLEC11	chr2	3651905	+
5UTR-3CDS	ENST00000338483	ENST00000403222		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000338483	ENST00000407373		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000338483	ENST00000332585		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000338483	ENST00000382310		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000338483	ENST00000446658		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000338483	ENST00000401475		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000338483	ENST00000437268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000338483	ENST00000535268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000338483	ENST00000496575		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538999	ENST00000403222		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538999	ENST00000407373		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538999	ENST00000332585		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538999	ENST00000382310		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538999	ENST00000446658		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000538999	ENST00000401475		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000538999	ENST00000437268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000538999	ENST00000535268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000538999	ENST00000496575		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538320	ENST00000403222		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538320	ENST00000407373		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538320	ENST00000332585		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538320	ENST00000382310		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-3CDS	ENST00000538320	ENST00000446658		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000538320	ENST00000401475		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-5UTR	ENST00000538320	ENST00000437268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000538320	ENST00000535268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5UTR-intron	ENST00000538320	ENST00000496575		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000426621	ENST00000403222		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000426621	ENST00000407373		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000426621	ENST00000332585		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000426621	ENST00000382310		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000426621	ENST00000446658		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000426621	ENST00000401475		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000426621	ENST00000437268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000426621	ENST00000535268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000426621	ENST00000496575		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000407965	ENST00000403222		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000407965	ENST00000407373		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000407965	ENST00000332585		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000407965	ENST00000382310		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-3CDS	ENST00000407965	ENST00000446658		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000407965	ENST00000401475		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-5UTR	ENST00000407965	ENST00000437268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000407965	ENST00000535268		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
intron-intron	ENST00000407965	ENST00000496575		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	MAFF	chr22	38598219	+	OSBP2	chr22	31266416	+
5CDS-intron	ENST00000462284	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000462284	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000462284	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000356290	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000356290	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000356290	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000540827	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000540827	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000540827	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000258149	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000258149	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000258149	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000428863	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000428863	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000428863	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393412	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393412	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393412	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000258148	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000258148	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000258148	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000544561	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000544561	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000544561	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393410	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393410	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393410	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393413	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393413	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000393413	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000517852	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000517852	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000517852	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000545204	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000545204	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000545204	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000350057	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000350057	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000350057	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000360430	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000360430	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000360430	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000299252	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000299252	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-intron	ENST00000299252	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000348801	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000348801	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000348801	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000478070	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000478070	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000478070	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000544125	ENST00000466773		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000544125	ENST00000368092		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
intron-intron	ENST00000544125	ENST00000368093		TCGA	RV	SARC	TCGA-DX-A240-01A	MDM2	chr12	69230529	+	SLAMF9	chr1	159923443	-
5CDS-5UTR	ENST00000261402	ENST00000253233		TCGA	RV	SARC	TCGA-PC-A5DN-01A	NUAK1	chr12	106477642	-	C12orf65	chr12	123738194	+
5CDS-5UTR	ENST00000261402	ENST00000366329		TCGA	RV	SARC	TCGA-PC-A5DN-01A	NUAK1	chr12	106477642	-	C12orf65	chr12	123738194	+
5CDS-5UTR	ENST00000261402	ENST00000429587		TCGA	RV	SARC	TCGA-PC-A5DN-01A	NUAK1	chr12	106477642	-	C12orf65	chr12	123738194	+
Frame-shit	ENST00000549396	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000549396	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000549396	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000550584	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000550584	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000550584	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000549325	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000549325	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000549325	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
intron-3CDS	ENST00000545296	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
intron-3CDS	ENST00000545296	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
intron-3CDS	ENST00000545296	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000550359	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000550359	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000550359	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
In-frame	ENST00000407050	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
In-frame	ENST00000407050	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
In-frame	ENST00000407050	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000333447	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000333447	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000333447	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000548586	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000548586	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000548586	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000443686	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000443686	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000443686	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000552948	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000552948	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000552948	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
In-frame	ENST00000541570	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
In-frame	ENST00000541570	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
In-frame	ENST00000541570	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
5UTR-3CDS	ENST00000541017	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
5UTR-3CDS	ENST00000541017	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
5UTR-3CDS	ENST00000541017	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	PPFIA2	chr12	81746898	-	ACSS3	chr12	81647086	+
Frame-shit	ENST00000230419	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000230419	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000230419	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000230419	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000349241	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000349241	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000349241	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000349241	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000345201	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000345201	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000345201	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000345201	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000352931	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000352931	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000352931	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000352931	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000481273	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000481273	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000481273	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000481273	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000476760	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000476760	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000476760	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000476760	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000471863	ENST00000229195		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
Frame-shit	ENST00000471863	ENST00000418359		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000471863	ENST00000548230		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000471863	ENST00000551483		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PTK7	chr6	43044305	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000367469	ENST00000388887		TCGA	RV	SARC	TCGA-DX-A1L4-01A	SASH1	chr6	148867282	+	STAB2	chr12	104152911	+
In-frame	ENST00000367467	ENST00000388887		TCGA	RV	SARC	TCGA-DX-A1L4-01A	SASH1	chr6	148867282	+	STAB2	chr12	104152911	+
intron-3CDS	ENST00000470750	ENST00000388887		TCGA	RV	SARC	TCGA-DX-A1L4-01A	SASH1	chr6	148867282	+	STAB2	chr12	104152911	+
In-frame	ENST00000378164	ENST00000519846		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
In-frame	ENST00000378164	ENST00000518592		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
In-frame	ENST00000378164	ENST00000325897		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
5CDS-3UTR	ENST00000378164	ENST00000518858		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
intron-3CDS	ENST00000519355	ENST00000519846		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
intron-3CDS	ENST00000519355	ENST00000518592		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
intron-3CDS	ENST00000519355	ENST00000325897		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
intron-3UTR	ENST00000519355	ENST00000518858		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	TAF2	chr8	120843917	-	CLVS1	chr8	62412014	+
Frame-shit	ENST00000331710	ENST00000368911		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TBK1	chr12	64879293	+	CDK19	chr6	110935869	-
Frame-shit	ENST00000331710	ENST00000323817		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TBK1	chr12	64879293	+	CDK19	chr6	110935869	-
Frame-shit	ENST00000331710	ENST00000413605		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TBK1	chr12	64879293	+	CDK19	chr6	110935869	-
5CDS-intron	ENST00000331710	ENST00000497709		TCGA	RV	SARC	TCGA-DX-A1L4-01A	TBK1	chr12	64879293	+	CDK19	chr6	110935869	-
Frame-shit	ENST00000434316	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
Frame-shit	ENST00000434316	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
Frame-shit	ENST00000434316	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
Frame-shit	ENST00000434316	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
5CDS-intron	ENST00000434316	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000375391	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000375391	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000375391	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000375391	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-intron	ENST00000375391	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000474393	ENST00000283558		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000474393	ENST00000375630		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000474393	ENST00000487903		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-3CDS	ENST00000474393	ENST00000375645		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
intron-intron	ENST00000474393	ENST00000419448		TCGA	RV	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113439449	+
5CDS-5UTR	ENST00000260810	ENST00000374037		TCGA	RV	SARC	TCGA-K1-A42X-02A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
5CDS-5UTR	ENST00000260810	ENST00000544425		TCGA	RV	SARC	TCGA-K1-A42X-02A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
intron-5UTR	ENST00000511439	ENST00000374037		TCGA	RV	SARC	TCGA-K1-A42X-02A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
intron-5UTR	ENST00000511439	ENST00000544425		TCGA	RV	SARC	TCGA-K1-A42X-02A	TOPBP1	chr3	133341935	-	SPDEF	chr6	34512261	-
5CDS-intron	ENST00000543727	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000543727	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000543727	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000543727	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000550559	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000550559	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000550559	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000550559	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000548851	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000548851	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000548851	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000548851	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000454289	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000454289	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000454289	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000454289	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
intron-intron	ENST00000540550	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
intron-intron	ENST00000540550	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
intron-intron	ENST00000540550	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
intron-intron	ENST00000540550	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000323833	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000323833	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000323833	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000323833	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000350762	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000350762	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000350762	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000350762	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
3UTR-intron	ENST00000497617	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
3UTR-intron	ENST00000497617	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
3UTR-intron	ENST00000497617	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
3UTR-intron	ENST00000497617	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TSFM	chr12	58186856	+	FRS2	chr12	69879982	+
In-frame	ENST00000509894	ENST00000259746		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
In-frame	ENST00000509894	ENST00000323267		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
5CDS-intron	ENST00000509894	ENST00000527188		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
In-frame	ENST00000230510	ENST00000259746		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
In-frame	ENST00000230510	ENST00000323267		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
5CDS-intron	ENST00000230510	ENST00000527188		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
In-frame	ENST00000369798	ENST00000259746		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
In-frame	ENST00000369798	ENST00000323267		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
5CDS-intron	ENST00000369798	ENST00000527188		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
intron-3CDS	ENST00000515751	ENST00000259746		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
intron-3CDS	ENST00000515751	ENST00000323267		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
intron-intron	ENST00000515751	ENST00000527188		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TTK	chr6	80721265	+	TMEM63B	chr6	44119583	+
5UTR-3CDS	ENST00000399975	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-3CDS	ENST00000399975	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-5UTR	ENST00000399975	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-3CDS	ENST00000399976	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-3CDS	ENST00000399976	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-5UTR	ENST00000399976	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-3CDS	ENST00000334352	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-3CDS	ENST00000334352	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5UTR-5UTR	ENST00000334352	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
Frame-shit	ENST00000535828	ENST00000548058		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
Frame-shit	ENST00000535828	ENST00000261206		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
5CDS-5UTR	ENST00000535828	ENST00000548324		TCGA	RV	SARC	TCGA-3B-A9HS-01A	USP16	chr21	30397098	+	ACSS3	chr12	81545623	+
Frame-shit	ENST00000324559	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
Frame-shit	ENST00000324559	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
Frame-shit	ENST00000324559	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000324559	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
3UTR-3CDS	ENST00000532043	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
3UTR-3CDS	ENST00000532043	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
3UTR-3CDS	ENST00000532043	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
3UTR-intron	ENST00000532043	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	ANO5	chr11	22297745	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000520381	ENST00000368445		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000520381	ENST00000368449		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000520381	ENST00000448116		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000520381	ENST00000368450		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000520381	ENST00000368453		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000520381	ENST00000606391		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000520381	ENST00000490667		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
In-frame	ENST00000262215	ENST00000368445		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000262215	ENST00000368449		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000262215	ENST00000448116		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000262215	ENST00000368450		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000262215	ENST00000368453		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000262215	ENST00000606391		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-intron	ENST00000262215	ENST00000490667		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-3CDS	ENST00000517955	ENST00000368445		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000517955	ENST00000368449		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000517955	ENST00000448116		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000517955	ENST00000368450		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000517955	ENST00000368453		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000517955	ENST00000606391		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000517955	ENST00000490667		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-3CDS	ENST00000518230	ENST00000368445		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000518230	ENST00000368449		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000518230	ENST00000448116		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000518230	ENST00000368450		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-5UTR	ENST00000518230	ENST00000368453		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000518230	ENST00000606391		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
intron-intron	ENST00000518230	ENST00000490667		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ARFGEF1	chr8	68211444	-	SHC1	chr1	154942675	-
5CDS-5UTR	ENST00000269141	ENST00000341928		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-5UTR	ENST00000269141	ENST00000544123		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-5UTR	ENST00000269141	ENST00000540638		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-5UTR	ENST00000269141	ENST00000342933		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-5UTR	ENST00000269141	ENST00000400111		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-intron	ENST00000269141	ENST00000542652		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-intron	ENST00000269141	ENST00000427684		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
5CDS-intron	ENST00000269141	ENST00000542146		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-5UTR	ENST00000399380	ENST00000341928		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-5UTR	ENST00000399380	ENST00000544123		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-5UTR	ENST00000399380	ENST00000540638		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-5UTR	ENST00000399380	ENST00000342933		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-5UTR	ENST00000399380	ENST00000400111		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-intron	ENST00000399380	ENST00000542652		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-intron	ENST00000399380	ENST00000427684		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
intron-intron	ENST00000399380	ENST00000542146		TCGA	RV	SARC	TCGA-MJ-A68H-01A	CDH2	chr18	25727637	-	EPB41L3	chr18	5489193	-
In-frame	ENST00000547956	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000547956	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000547956	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000547956	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000547956	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000547956	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
In-frame	ENST00000549260	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000549260	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000549260	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000549260	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000549260	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000549260	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
In-frame	ENST00000303694	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000303694	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000303694	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000303694	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000303694	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000303694	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
In-frame	ENST00000546689	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000546689	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000546689	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000546689	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000546689	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000546689	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000550711	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000550711	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000550711	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000550711	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000550711	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000550711	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CHST11	chr12	104995769	+	PTPRR	chr12	71158558	-
Frame-shit	ENST00000392521	ENST00000261267		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000392521	ENST00000549690		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
In-frame	ENST00000392521	ENST00000548839		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000261833	ENST00000261267		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000261833	ENST00000549690		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
In-frame	ENST00000261833	ENST00000548839		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000537607	ENST00000261267		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000537607	ENST00000549690		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000537607	ENST00000548839		TCGA	RV	SARC	TCGA-3B-A9HO-01A	CIT	chr12	120260624	-	LYZ	chr12	69743888	+
In-frame	ENST00000374553	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000374553	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000374553	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000374553	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
In-frame	ENST00000374552	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000374552	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000374552	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000374552	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
In-frame	ENST00000524573	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000524573	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000524573	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000524573	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
In-frame	ENST00000525810	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000525810	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000525810	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000525810	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
In-frame	ENST00000527388	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000527388	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000527388	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000527388	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
3UTR-3CDS	ENST00000502251	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
3UTR-intron	ENST00000502251	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
3UTR-intron	ENST00000502251	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
3UTR-intron	ENST00000502251	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
In-frame	ENST00000338901	ENST00000374333		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000338901	ENST00000374320		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000338901	ENST00000344304		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000338901	ENST00000395889		TCGA	RV	SARC	TCGA-DX-A3M1-01A	EDA	chrX	68836548	+	TEX11	chrX	70093157	-
5CDS-intron	ENST00000393561	ENST00000264818		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000393561	ENST00000524462		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000393561	ENST00000525621		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000393561	ENST00000529370		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000393561	ENST00000529422		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000222399	ENST00000264818		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000222399	ENST00000524462		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000222399	ENST00000525621		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000222399	ENST00000529370		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000222399	ENST00000529422		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000393560	ENST00000264818		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000393560	ENST00000524462		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000393560	ENST00000525621		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000393560	ENST00000529370		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000393560	ENST00000529422		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000474380	ENST00000264818		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000474380	ENST00000524462		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000474380	ENST00000525621		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000474380	ENST00000529370		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
intron-intron	ENST00000474380	ENST00000529422		TCGA	RV	SARC	TCGA-DX-A1KY-01A	LAMB1	chr7	107564248	-	TYK2	chr19	10491352	-
5UTR-3CDS	ENST00000543885	ENST00000400316		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
5UTR-3CDS	ENST00000543885	ENST00000262719		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
5UTR-intron	ENST00000543885	ENST00000588953		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000269439	ENST00000400316		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000269439	ENST00000262719		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
5CDS-intron	ENST00000269439	ENST00000588953		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000587853	ENST00000400316		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000587853	ENST00000262719		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
5CDS-intron	ENST00000587853	ENST00000588953		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000590330	ENST00000400316		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000590330	ENST00000262719		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
5CDS-intron	ENST00000590330	ENST00000588953		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000588679	ENST00000400316		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
Frame-shit	ENST00000588679	ENST00000262719		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
5CDS-intron	ENST00000588679	ENST00000588953		TCGA	RV	SARC	TCGA-3B-A9HV-01A	RNF165	chr18	43914298	+	PHLPP1	chr18	60608951	+
In-frame	ENST00000261381	ENST00000458008		TCGA	RV	SARC	TCGA-QC-A6FX-01A	XYLT1	chr16	17564291	-	FAM86A	chr16	5145515	-
In-frame	ENST00000261381	ENST00000427587		TCGA	RV	SARC	TCGA-QC-A6FX-01A	XYLT1	chr16	17564291	-	FAM86A	chr16	5145515	-
In-frame	ENST00000261381	ENST00000587133		TCGA	RV	SARC	TCGA-QC-A6FX-01A	XYLT1	chr16	17564291	-	FAM86A	chr16	5145515	-
intron-3CDS	ENST00000568226	ENST00000458008		TCGA	RV	SARC	TCGA-QC-A6FX-01A	XYLT1	chr16	17564291	-	FAM86A	chr16	5145515	-
intron-3CDS	ENST00000568226	ENST00000427587		TCGA	RV	SARC	TCGA-QC-A6FX-01A	XYLT1	chr16	17564291	-	FAM86A	chr16	5145515	-
intron-3CDS	ENST00000568226	ENST00000587133		TCGA	RV	SARC	TCGA-QC-A6FX-01A	XYLT1	chr16	17564291	-	FAM86A	chr16	5145515	-
intron-3CDS	ENST00000600412	ENST00000296604		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000600412	ENST00000502994		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000600412	ENST00000515759		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000396424	ENST00000296604		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000396424	ENST00000502994		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
In-frame	ENST00000396424	ENST00000515759		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000598440	ENST00000296604		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000598440	ENST00000502994		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
intron-3CDS	ENST00000598440	ENST00000515759		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZNF665	chr19	53678698	-	RANBP3L	chr5	36271413	-
5CDS-intron	ENST00000265748	ENST00000340353		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000265748	ENST00000532959		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000265748	ENST00000305494		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-5UTR	ENST00000265748	ENST00000535167		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000265748	ENST00000355734		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000396068	ENST00000340353		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000396068	ENST00000532959		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000396068	ENST00000305494		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-5UTR	ENST00000396068	ENST00000535167		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
5CDS-intron	ENST00000396068	ENST00000355734		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
intron-intron	ENST00000495714	ENST00000340353		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
intron-intron	ENST00000495714	ENST00000532959		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
intron-intron	ENST00000495714	ENST00000305494		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
intron-5UTR	ENST00000495714	ENST00000535167		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
intron-intron	ENST00000495714	ENST00000355734		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	ANLN	chr7	36478899	+	TMEM135	chr11	86868383	+
In-frame	ENST00000262919	ENST00000287022		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000262919	ENST00000517523		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000262919	ENST00000518406		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000262919	ENST00000523920		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
In-frame	ENST00000446916	ENST00000287022		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000446916	ENST00000517523		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000446916	ENST00000518406		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000446916	ENST00000523920		TCGA	RV	SARC	TCGA-K1-A42X-02A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-5UTR	ENST00000280758	ENST00000412676		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000280758	ENST00000397688		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000280758	ENST00000312143		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-intron	ENST00000280758	ENST00000552995		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000280758	ENST00000550402		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000420571	ENST00000412676		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000420571	ENST00000397688		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000420571	ENST00000312143		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-intron	ENST00000420571	ENST00000552995		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000420571	ENST00000550402		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000490090	ENST00000412676		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000490090	ENST00000397688		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000490090	ENST00000312143		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-intron	ENST00000490090	ENST00000552995		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000490090	ENST00000550402		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000357167	ENST00000412676		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000357167	ENST00000397688		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000357167	ENST00000312143		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-intron	ENST00000357167	ENST00000552995		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
5CDS-5UTR	ENST00000357167	ENST00000550402		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
intron-5UTR	ENST00000494235	ENST00000412676		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
intron-5UTR	ENST00000494235	ENST00000397688		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
intron-5UTR	ENST00000494235	ENST00000312143		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
intron-intron	ENST00000494235	ENST00000552995		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
intron-5UTR	ENST00000494235	ENST00000550402		TCGA	RV	SARC	TCGA-DX-A3U5-01A	BTBD11	chr12	107975081	+	CMKLR1	chr12	108687441	-
In-frame	ENST00000258418	ENST00000341329		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
Frame-shit	ENST00000258418	ENST00000392062		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-intron	ENST00000258418	ENST00000409053		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-3UTR	ENST00000258418	ENST00000493526		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
In-frame	ENST00000410084	ENST00000341329		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
Frame-shit	ENST00000410084	ENST00000392062		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-intron	ENST00000410084	ENST00000409053		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-3UTR	ENST00000410084	ENST00000493526		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
In-frame	ENST00000409788	ENST00000341329		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
Frame-shit	ENST00000409788	ENST00000392062		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-intron	ENST00000409788	ENST00000409053		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-3UTR	ENST00000409788	ENST00000493526		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
intron-3CDS	ENST00000484398	ENST00000341329		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
intron-3CDS	ENST00000484398	ENST00000392062		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
intron-intron	ENST00000484398	ENST00000409053		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
intron-3UTR	ENST00000484398	ENST00000493526		TCGA	RV	SARC	TCGA-DX-A8BX-01A	CAB39	chr2	231624830	+	RHBDD1	chr2	227860147	+
5CDS-intron	ENST00000394196	ENST00000448430		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000380679		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000457155		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000348518		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000321149		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000448430		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000380679		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000457155		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000348518		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000321149		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000448430		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000380679		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000457155		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000348518		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000321149		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000448430		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000380679		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000457155		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000348518		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000321149		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000448430		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000380679		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000457155		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000348518		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000321149		TCGA	RV	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	DYX1C1	chr15	55677912	-
In-frame	ENST00000552983	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000552983	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000552983	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000552983	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000332896	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000332896	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000332896	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000332896	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000552033	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000552033	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000552033	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000552033	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000548483	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000548483	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000548483	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000548483	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000542893	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000542893	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000542893	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000542893	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000541813	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000541813	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
In-frame	ENST00000541813	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000541813	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
intron-3CDS	ENST00000548330	ENST00000398016		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
intron-3CDS	ENST00000548330	ENST00000359742		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
intron-3CDS	ENST00000548330	ENST00000286445		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
intron-intron	ENST00000548330	ENST00000542021		TCGA	RV	SARC	TCGA-DX-A23R-01A	CRADD	chr12	94072848	+	GRIP1	chr12	66859202	-
Frame-shit	ENST00000381441	ENST00000440768		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000381441	ENST00000359197		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000343574		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000331340		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000349824		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000357364		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000346667		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000438033		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000439701		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000413698		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381441	ENST00000492782		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000334635	ENST00000440768		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000334635	ENST00000359197		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000343574		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000331340		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000349824		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000357364		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000346667		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000438033		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000439701		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000413698		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000334635	ENST00000492782		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-3CDS	ENST00000513800	ENST00000440768		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-3CDS	ENST00000513800	ENST00000359197		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000343574		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000331340		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000349824		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000357364		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000346667		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000438033		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000439701		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000413698		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
intron-intron	ENST00000513800	ENST00000492782		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000381437	ENST00000440768		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000381437	ENST00000359197		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000343574		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000331340		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000349824		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000357364		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000346667		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000438033		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000439701		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000413698		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000381437	ENST00000492782		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000451288	ENST00000440768		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
Frame-shit	ENST00000451288	ENST00000359197		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000343574		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000331340		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000349824		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000357364		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000346667		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000438033		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000439701		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000413698		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000451288	ENST00000492782		TCGA	RV	SARC	TCGA-IE-A4EJ-01A	DCUN1D4	chr4	52758017	+	IKZF1	chr7	50444231	+
5CDS-intron	ENST00000585892	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000585892	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000314646	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000359692	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000389253	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000355667	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
5CDS-intron	ENST00000408974	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000317133		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000375741		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000375739		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000370623		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000544132		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000218789		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000375736		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000426073		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000375737		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000375723		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000478679		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
intron-intron	ENST00000591819	ENST00000483189		TCGA	RV	SARC	TCGA-SI-A71O-06A	DNM2	chr19	10930765	+	ARHGEF7	chr13	111953095	+
Frame-shit	ENST00000199389	ENST00000403050		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
Frame-shit	ENST00000199389	ENST00000445996		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
5CDS-intron	ENST00000199389	ENST00000469407		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
In-frame	ENST00000536084	ENST00000403050		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
In-frame	ENST00000536084	ENST00000445996		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
5CDS-intron	ENST00000536084	ENST00000469407		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
intron-3CDS	ENST00000495565	ENST00000403050		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
intron-3CDS	ENST00000495565	ENST00000445996		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
intron-intron	ENST00000495565	ENST00000469407		TCGA	RV	SARC	TCGA-JV-A75J-01A	EIF2AK1	chr7	6094177	-	PHF14	chr7	11091239	+
5CDS-5UTR	ENST00000433119	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000433119	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000433119	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000433119	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000433119	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000433119	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000433119	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000295757	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000295757	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000295757	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000295757	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000295757	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000295757	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000295757	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000402259	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000402259	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000402259	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000402259	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000402259	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000402259	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000402259	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000402271	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000402271	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000402271	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000402271	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000402271	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000402271	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000402271	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000446613	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000446613	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000446613	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000446613	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000446613	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000446613	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000446613	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000404548	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000404548	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000404548	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404548	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404548	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404548	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404548	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000404040	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000404040	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000404040	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404040	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404040	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404040	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000404040	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000405025	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000405025	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000405025	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000405025	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000405025	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000405025	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000405025	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000522202	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000522202	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000522202	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000522202	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000522202	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000522202	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000522202	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000437379	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000437379	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000437379	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000437379	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000437379	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000437379	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000437379	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000495099	ENST00000382275		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000495099	ENST00000507958		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-5UTR	ENST00000495099	ENST00000502796		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000495099	ENST00000511273		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000495099	ENST00000274170		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000495099	ENST00000506372		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-intron	ENST00000495099	ENST00000510297		TCGA	RV	SARC	TCGA-DX-A3LS-01A	HDAC11	chr3	13525064	+	CDH18	chr5	19981287	-
intron-3CDS	ENST00000453228	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000453228	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000453228	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000453228	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000453228	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000453228	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000453228	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000354410	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000354410	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000354410	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000354410	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000354410	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000354410	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000354410	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-3CDS	ENST00000558856	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-3CDS	ENST00000558856	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-3CDS	ENST00000558856	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-intron	ENST00000558856	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-intron	ENST00000558856	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-intron	ENST00000558856	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
3UTR-intron	ENST00000558856	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000558812	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000558812	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000558812	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000558812	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000558812	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000558812	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000558812	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000338042	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000338042	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000338042	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000338042	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000338042	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000338042	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000338042	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000557785	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000557785	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000557785	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557785	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557785	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557785	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557785	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000449277	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000449277	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-3CDS	ENST00000449277	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000449277	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000449277	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000449277	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
intron-intron	ENST00000449277	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000557942	ENST00000558879		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000557942	ENST00000301981		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-3CDS	ENST00000557942	ENST00000422500		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557942	ENST00000442993		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557942	ENST00000447360		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557942	ENST00000331450		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5UTR-intron	ENST00000557942	ENST00000559399		TCGA	RV	SARC	TCGA-X6-A7WC-01A	MEF2A	chr15	100138716	+	LRRC28	chr15	99926235	+
5CDS-intron	ENST00000262384	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48572639	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000262384	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48572639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000565423	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48572639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000565423	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	N4BP1	chr16	48572639	-	EEA1	chr12	93229203	-
In-frame	ENST00000367385	ENST00000541742		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000367385	ENST00000490107		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000367385	ENST00000388985		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000367385	ENST00000366517		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000367385	ENST00000403792		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000538004	ENST00000541742		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000538004	ENST00000490107		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000538004	ENST00000388985		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000538004	ENST00000366517		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000538004	ENST00000403792		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000367383	ENST00000541742		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000367383	ENST00000490107		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
In-frame	ENST00000367383	ENST00000388985		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000367383	ENST00000366517		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000367383	ENST00000403792		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
3UTR-3CDS	ENST00000417895	ENST00000541742		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
3UTR-3CDS	ENST00000417895	ENST00000490107		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
3UTR-3CDS	ENST00000417895	ENST00000388985		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
3UTR-5UTR	ENST00000417895	ENST00000366517		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
3UTR-intron	ENST00000417895	ENST00000403792		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	NEK7	chr1	198201767	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000393249	ENST00000311083		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393249	ENST00000552330		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393249	ENST00000546966		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393249	ENST00000547435		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000261183	ENST00000311083		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000261183	ENST00000552330		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000261183	ENST00000546966		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000261183	ENST00000547435		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393250	ENST00000311083		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393250	ENST00000552330		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393250	ENST00000546966		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000393250	ENST00000547435		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552178	ENST00000311083		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552178	ENST00000552330		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552178	ENST00000546966		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552178	ENST00000547435		TCGA	RV	SARC	TCGA-FX-A3NK-01A	OSBPL8	chr12	76844631	-	CSRP2	chr12	77260041	-
5CDS-5UTR	ENST00000371714	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371714	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371714	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000371714	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371714	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371710	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371710	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371710	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000371710	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000371710	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000337809	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000337809	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000337809	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000337809	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000337809	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5UTR-5UTR	ENST00000435686	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5UTR-5UTR	ENST00000435686	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5UTR-5UTR	ENST00000435686	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5UTR-intron	ENST00000435686	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5UTR-5UTR	ENST00000435686	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000447887	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000447887	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000447887	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000447887	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000447887	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000453295	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000453295	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000453295	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000453295	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000453295	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000428468	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000428468	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000428468	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000428468	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000428468	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000530544	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000530544	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000530544	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-intron	ENST00000530544	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000530544	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000531828	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000531828	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000531828	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-intron	ENST00000531828	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000531828	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000361556	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000361556	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000361556	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-intron	ENST00000361556	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000361556	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000473207	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000473207	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000473207	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-intron	ENST00000473207	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000473207	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000462759	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000462759	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000462759	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-intron	ENST00000462759	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000462759	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000486942	ENST00000539068		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000486942	ENST00000536438		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000486942	ENST00000357266		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-intron	ENST00000486942	ENST00000540787		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000486942	ENST00000542713		TCGA	RV	SARC	TCGA-DX-AB3A-01A	OSBPL9	chr1	52082893	+	FKBP5	chr6	35610620	-
Frame-shit	ENST00000549396	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000549396	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000549396	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000549396	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000550584	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000550584	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000550584	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000550584	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000549325	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000549325	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000549325	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000549325	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000545296	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000545296	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000545296	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000545296	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000550359	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000550359	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000550359	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000550359	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000407050	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000407050	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000407050	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000407050	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000333447	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000333447	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000333447	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000333447	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000548586	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000548586	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000548586	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000548586	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000443686	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000443686	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000443686	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000443686	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000552948	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000552948	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
Frame-shit	ENST00000552948	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
5CDS-intron	ENST00000552948	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000541570	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000541570	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000541570	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000541570	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000541017	ENST00000398016		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000541017	ENST00000359742		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-3CDS	ENST00000541017	ENST00000286445		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
intron-intron	ENST00000541017	ENST00000542021		TCGA	RV	SARC	TCGA-3B-A9HL-01A	PPFIA2	chr12	82070570	-	GRIP1	chr12	66826408	-
In-frame	ENST00000549396	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000549396	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
In-frame	ENST00000550584	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000550584	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
In-frame	ENST00000549325	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000549325	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-3CDS	ENST00000545296	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-intron	ENST00000545296	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-3CDS	ENST00000550359	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-intron	ENST00000550359	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-3CDS	ENST00000407050	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-intron	ENST00000407050	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
In-frame	ENST00000333447	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000333447	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
In-frame	ENST00000548586	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000548586	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-3CDS	ENST00000443686	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-intron	ENST00000443686	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
In-frame	ENST00000552948	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
5CDS-intron	ENST00000552948	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-3CDS	ENST00000541570	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-intron	ENST00000541570	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-3CDS	ENST00000541017	ENST00000261180		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-intron	ENST00000541017	ENST00000549138		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PPFIA2	chr12	82147752	-	TRHDE	chr12	72771775	+
intron-5UTR	ENST00000531326	ENST00000429150		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000416623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000392309		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000392307		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000437412		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000444202		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000493898		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000360537		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000531326	ENST00000354765		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000531326	ENST00000367572		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
intron-intron	ENST00000531326	ENST00000367571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000429150		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000416623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000392309		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000392307		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000437412		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000444202		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000493898		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000360537		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000392597	ENST00000354765		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000392597	ENST00000367572		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000392597	ENST00000367571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000429150		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000416623		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000392309		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000392307		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000437412		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000444202		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000493898		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000360537		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-5UTR	ENST00000351677	ENST00000354765		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000351677	ENST00000367572		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
5CDS-intron	ENST00000351677	ENST00000367571		TCGA	RV	SARC	TCGA-DX-A23Z-01A	PTPN11	chr12	112856929	+	PLAGL1	chr6	144290115	-
In-frame	ENST00000371655	ENST00000316005		TCGA	RV	SARC	TCGA-DX-A23U-01A	RAB3B	chr1	52442562	-	PKN2	chr1	89206671	+
In-frame	ENST00000371655	ENST00000370521		TCGA	RV	SARC	TCGA-DX-A23U-01A	RAB3B	chr1	52442562	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000371655	ENST00000370505		TCGA	RV	SARC	TCGA-DX-A23U-01A	RAB3B	chr1	52442562	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000371655	ENST00000370513		TCGA	RV	SARC	TCGA-DX-A23U-01A	RAB3B	chr1	52442562	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000371655	ENST00000544045		TCGA	RV	SARC	TCGA-DX-A23U-01A	RAB3B	chr1	52442562	-	PKN2	chr1	89206671	+
5CDS-intron	ENST00000371655	ENST00000495119		TCGA	RV	SARC	TCGA-DX-A23U-01A	RAB3B	chr1	52442562	-	PKN2	chr1	89206671	+
5CDS-5UTR	ENST00000267163	ENST00000228438		TCGA	RV	SARC	TCGA-DX-A3UF-01A	RB1	chr13	48881542	+	CLEC2B	chr12	10015172	-
5CDS-intron	ENST00000267163	ENST00000538152		TCGA	RV	SARC	TCGA-DX-A3UF-01A	RB1	chr13	48881542	+	CLEC2B	chr12	10015172	-
intron-5UTR	ENST00000484879	ENST00000228438		TCGA	RV	SARC	TCGA-DX-A3UF-01A	RB1	chr13	48881542	+	CLEC2B	chr12	10015172	-
intron-intron	ENST00000484879	ENST00000538152		TCGA	RV	SARC	TCGA-DX-A3UF-01A	RB1	chr13	48881542	+	CLEC2B	chr12	10015172	-
intron-3CDS	ENST00000335670	ENST00000295633		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000335670	ENST00000424703		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-intron	ENST00000335670	ENST00000485968		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000309157	ENST00000295633		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000309157	ENST00000424703		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-intron	ENST00000309157	ENST00000485968		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000261523	ENST00000295633		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000261523	ENST00000424703		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-intron	ENST00000261523	ENST00000485968		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
In-frame	ENST00000449337	ENST00000295633		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
In-frame	ENST00000449337	ENST00000424703		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
5CDS-intron	ENST00000449337	ENST00000485968		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000560004	ENST00000295633		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-3CDS	ENST00000560004	ENST00000424703		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
intron-intron	ENST00000560004	ENST00000485968		TCGA	RV	SARC	TCGA-QC-AA9N-01A	RORA	chr15	60884586	-	FSTL1	chr3	120123818	-
In-frame	ENST00000338272	ENST00000316963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
In-frame	ENST00000338272	ENST00000343231		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
5CDS-intron	ENST00000338272	ENST00000522007		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
5CDS-5UTR	ENST00000338272	ENST00000519926		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
3UTR-3CDS	ENST00000473828	ENST00000316963		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
3UTR-3CDS	ENST00000473828	ENST00000343231		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
3UTR-intron	ENST00000473828	ENST00000522007		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
3UTR-5UTR	ENST00000473828	ENST00000519926		TCGA	RV	SARC	TCGA-3B-A9HS-01A	TMEM167B	chr1	109635643	+	LYPLA1	chr8	54967693	-
Frame-shit	ENST00000284268	ENST00000265104		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13736041	-
5CDS-intron	ENST00000284268	ENST00000504001		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13736041	-
intron-3CDS	ENST00000535119	ENST00000265104		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13736041	-
intron-intron	ENST00000535119	ENST00000504001		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13736041	-
intron-3CDS	ENST00000503939	ENST00000265104		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13736041	-
intron-intron	ENST00000503939	ENST00000504001		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13736041	-
In-frame	ENST00000262919	ENST00000287022		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000262919	ENST00000517523		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000262919	ENST00000518406		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000262919	ENST00000523920		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
In-frame	ENST00000446916	ENST00000287022		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000446916	ENST00000517523		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000446916	ENST00000518406		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000446916	ENST00000523920		TCGA	RV	SARC	TCGA-K1-A42X-01A	ATRN	chr20	3541552	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000299300	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000299300	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5CDS-intron	ENST00000544368	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
5UTR-intron	ENST00000543146	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A3LS-01A	CCT2	chr12	69980124	+	KCNC2	chr12	75437593	-
Frame-shit	ENST00000435070	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
5CDS-intron	ENST00000435070	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
Frame-shit	ENST00000456847	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
5CDS-intron	ENST00000456847	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
Frame-shit	ENST00000266679	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
5CDS-intron	ENST00000266679	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
3UTR-3CDS	ENST00000550987	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
3UTR-intron	ENST00000550987	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
Frame-shit	ENST00000551516	ENST00000421865		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
5CDS-intron	ENST00000551516	ENST00000498257		TCGA	RV	SARC	TCGA-HB-A3YV-01A	CPSF6	chr12	69633486	+	LAMA2	chr6	129498851	+
Frame-shit	ENST00000377669	ENST00000351293		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377669	ENST00000322635		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377669	ENST00000394762		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377669	ENST00000423381		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377669	ENST00000322680		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377669	ENST00000305762		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377669	ENST00000372765		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5CDS-5UTR	ENST00000377669	ENST00000472912		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5CDS-intron	ENST00000377669	ENST00000444854		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000351293		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000322635		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000394762		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000423381		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000322680		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000305762		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
Frame-shit	ENST00000377666	ENST00000372765		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5CDS-5UTR	ENST00000377666	ENST00000472912		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5CDS-intron	ENST00000377666	ENST00000444854		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000351293		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000322635		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000394762		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000423381		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000322680		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000305762		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-3CDS	ENST00000472022	ENST00000372765		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-5UTR	ENST00000472022	ENST00000472912		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5UTR-intron	ENST00000472022	ENST00000444854		TCGA	RV	SARC	TCGA-X6-A7WB-01A	KLF12	chr13	74518118	-	CAMK2G	chr10	75577312	-
5CDS-5UTR	ENST00000266674	ENST00000416284		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000266674	ENST00000551619		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000266674	ENST00000550003		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000266674	ENST00000551449		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000266674	ENST00000549456		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000536515	ENST00000416284		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000536515	ENST00000551619		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000536515	ENST00000550003		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000536515	ENST00000551449		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000536515	ENST00000549456		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000540815	ENST00000416284		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000540815	ENST00000551619		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000540815	ENST00000550003		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000540815	ENST00000551449		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000540815	ENST00000549456		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	LGR5	chr12	71928966	+	FAM19A2	chr12	62261207	-
Frame-shit	ENST00000537344	ENST00000298925		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000537344	ENST00000357134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000537344	ENST00000325319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000537344	ENST00000532434		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
5CDS-3UTR	ENST00000537344	ENST00000529218		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000256194	ENST00000298925		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000256194	ENST00000357134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000256194	ENST00000325319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000256194	ENST00000532434		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
5CDS-3UTR	ENST00000256194	ENST00000529218		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000527546	ENST00000298925		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000527546	ENST00000357134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000527546	ENST00000325319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000527546	ENST00000532434		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
5CDS-3UTR	ENST00000527546	ENST00000529218		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000342902	ENST00000298925		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000342902	ENST00000357134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000342902	ENST00000325319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000342902	ENST00000532434		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
5CDS-3UTR	ENST00000342902	ENST00000529218		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000379612	ENST00000298925		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000379612	ENST00000357134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000379612	ENST00000325319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
Frame-shit	ENST00000379612	ENST00000532434		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
5CDS-3UTR	ENST00000379612	ENST00000529218		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
intron-3CDS	ENST00000527195	ENST00000298925		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
intron-3CDS	ENST00000527195	ENST00000357134		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
intron-3CDS	ENST00000527195	ENST00000325319		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
intron-3CDS	ENST00000527195	ENST00000532434		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
intron-3UTR	ENST00000527195	ENST00000529218		TCGA	RV	SARC	TCGA-DX-A1KU-01A	MICAL2	chr11	12183966	+	NELL1	chr11	21392399	+
5CDS-intron	ENST00000260302	ENST00000216297		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MMP13	chr11	102813724	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000260302	ENST00000555943		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MMP13	chr11	102813724	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000340273	ENST00000216297		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MMP13	chr11	102813724	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000340273	ENST00000555943		TCGA	RV	SARC	TCGA-DX-AB2E-01A	MMP13	chr11	102813724	-	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000582151	ENST00000262442		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000582151	ENST00000454412		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-5UTR	ENST00000582151	ENST00000608377		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-3UTR	ENST00000582151	ENST00000396001		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-intron	ENST00000582151	ENST00000579828		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000250124	ENST00000262442		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000250124	ENST00000454412		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-5UTR	ENST00000250124	ENST00000608377		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-3UTR	ENST00000250124	ENST00000396001		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-intron	ENST00000250124	ENST00000579828		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000396501	ENST00000262442		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000396501	ENST00000454412		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-5UTR	ENST00000396501	ENST00000608377		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-3UTR	ENST00000396501	ENST00000396001		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-intron	ENST00000396501	ENST00000579828		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000423172	ENST00000262442		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
Frame-shit	ENST00000423172	ENST00000454412		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-5UTR	ENST00000423172	ENST00000608377		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-3UTR	ENST00000423172	ENST00000396001		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5CDS-intron	ENST00000423172	ENST00000579828		TCGA	RV	SARC	TCGA-X6-A8C4-01A	MPDU1	chr17	7487283	+	DNAH9	chr17	11790142	+
5UTR-5UTR	ENST00000552432	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000552432	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-intron	ENST00000552432	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000552432	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-3UTR	ENST00000552432	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000547379	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000547379	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-intron	ENST00000547379	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000547379	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-3UTR	ENST00000547379	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000549465	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000549465	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-intron	ENST00000549465	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000549465	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
5UTR-3UTR	ENST00000549465	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000552024	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000552024	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-intron	ENST00000552024	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000552024	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-3UTR	ENST00000552024	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000261187	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000261187	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-intron	ENST00000261187	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000261187	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-3UTR	ENST00000261187	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000543448	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000543448	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-intron	ENST00000543448	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000543448	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-3UTR	ENST00000543448	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000549588	ENST00000393240		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000549588	ENST00000261205		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-intron	ENST00000549588	ENST00000457153		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-5UTR	ENST00000549588	ENST00000552744		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
intron-3UTR	ENST00000549588	ENST00000549454		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	59990017	+	SYT1	chr12	79441077	+
In-frame	ENST00000263918	ENST00000233099		TCGA	RV	SARC	TCGA-KD-A5QS-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37216002	-
In-frame	ENST00000263918	ENST00000354531		TCGA	RV	SARC	TCGA-KD-A5QS-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37216002	-
In-frame	ENST00000379213	ENST00000233099		TCGA	RV	SARC	TCGA-KD-A5QS-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37216002	-
In-frame	ENST00000379213	ENST00000354531		TCGA	RV	SARC	TCGA-KD-A5QS-01A	STRN	chr2	37193373	-	HEATR5B	chr2	37216002	-
5UTR-3CDS	ENST00000393240	ENST00000549396		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000393240	ENST00000550584		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000393240	ENST00000549325		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000545296		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000550359		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000407050		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000333447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000548586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000443686		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000393240	ENST00000552948		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-intron	ENST00000393240	ENST00000541570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-intron	ENST00000393240	ENST00000541017		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000261205	ENST00000549396		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000261205	ENST00000550584		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000261205	ENST00000549325		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000545296		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000550359		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000407050		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000333447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000548586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000443686		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000261205	ENST00000552948		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-intron	ENST00000261205	ENST00000541570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-intron	ENST00000261205	ENST00000541017		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000457153	ENST00000549396		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000457153	ENST00000550584		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-3CDS	ENST00000457153	ENST00000549325		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000545296		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000550359		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000407050		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000333447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000548586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000443686		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-5UTR	ENST00000457153	ENST00000552948		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-intron	ENST00000457153	ENST00000541570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
intron-intron	ENST00000457153	ENST00000541017		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000552744	ENST00000549396		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000552744	ENST00000550584		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000552744	ENST00000549325		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000545296		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000550359		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000407050		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000333447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000548586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000443686		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-5UTR	ENST00000552744	ENST00000552948		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-intron	ENST00000552744	ENST00000541570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-intron	ENST00000552744	ENST00000541017		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-3CDS	ENST00000549454	ENST00000549396		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-3CDS	ENST00000549454	ENST00000550584		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-3CDS	ENST00000549454	ENST00000549325		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000545296		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000550359		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000407050		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000333447		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000548586		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000443686		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-5UTR	ENST00000549454	ENST00000552948		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-intron	ENST00000549454	ENST00000541570		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
3UTR-intron	ENST00000549454	ENST00000541017		TCGA	RV	SARC	TCGA-HB-A3YV-01A	SYT1	chr12	79441142	+	PPFIA2	chr12	81851645	-
5UTR-3CDS	ENST00000393330	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
5UTR-3CDS	ENST00000393330	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
5UTR-3CDS	ENST00000393330	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
5UTR-3CDS	ENST00000393330	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
5UTR-3CDS	ENST00000393330	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
5UTR-intron	ENST00000393330	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000247829	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000247829	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000247829	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000247829	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000247829	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-intron	ENST00000247829	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000546561	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000546561	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000546561	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000546561	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000546561	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-intron	ENST00000546561	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552128	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552128	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552128	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552128	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552128	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-intron	ENST00000552128	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552786	ENST00000343823		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552786	ENST00000250635		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552786	ENST00000545394		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552786	ENST00000428278		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-3CDS	ENST00000552786	ENST00000521652		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
intron-intron	ENST00000552786	ENST00000524263		TCGA	RV	SARC	TCGA-DX-A3LS-01A	TSPAN8	chr12	71676496	-	ASH2L	chr8	37996334	+
5UTR-3CDS	ENST00000328070	ENST00000281938		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	HSPB8	chr12	119624830	+
5UTR-3UTR	ENST00000328070	ENST00000542496		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	HSPB8	chr12	119624830	+
3UTR-3CDS	ENST00000594944	ENST00000281938		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	HSPB8	chr12	119624830	+
3UTR-3UTR	ENST00000594944	ENST00000542496		TCGA	RV	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	HSPB8	chr12	119624830	+
5CDS-3UTR	ENST00000296824	ENST00000547990		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCDC127	chr5	216844	-	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000296824	ENST00000546809		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCDC127	chr5	216844	-	MUCL1	chr12	55250554	+
5CDS-3UTR	ENST00000296824	ENST00000308796		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	CCDC127	chr5	216844	-	MUCL1	chr12	55250554	+
Frame-shit	ENST00000367064	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
Frame-shit	ENST00000367063	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
Frame-shit	ENST00000391921	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
3UTR-3CDS	ENST00000367067	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
Frame-shit	ENST00000314754	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
Frame-shit	ENST00000391920	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
Frame-shit	ENST00000367062	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
Frame-shit	ENST00000367065	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
3UTR-3CDS	ENST00000465534	ENST00000417209		TCGA	RV	SARC	TCGA-DX-A3LY-01B	CD55	chr1	207512762	+	RGS21	chr1	192335051	+
5CDS-5UTR	ENST00000344450	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000344450	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-intron	ENST00000344450	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000344450	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000344450	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-intron	ENST00000344450	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603453	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603453	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000603453	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603453	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603453	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000603453	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605315	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605315	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000605315	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605315	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605315	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000605315	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000419235	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000419235	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-intron	ENST00000419235	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000419235	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-5UTR	ENST00000419235	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5CDS-intron	ENST00000419235	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5UTR-5UTR	ENST00000605035	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5UTR-5UTR	ENST00000605035	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5UTR-intron	ENST00000605035	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5UTR-5UTR	ENST00000605035	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5UTR-5UTR	ENST00000605035	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
5UTR-intron	ENST00000605035	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605863	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605863	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000605863	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605863	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000605863	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000605863	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603290	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603290	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000603290	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603290	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000603290	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000603290	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000604971	ENST00000370750		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000604971	ENST00000370746		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000604971	ENST00000545789		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000604971	ENST00000370748		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-5UTR	ENST00000604971	ENST00000370745		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
intron-intron	ENST00000604971	ENST00000484701		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	DUSP22	chr6	311962	+	BEND6	chr6	56846509	+
In-frame	ENST00000253669	ENST00000250237		TCGA	RV	SARC	TCGA-DX-A8BL-01A	HAUS8	chr19	17184084	-	QTRT1	chr19	10822837	+
5CDS-intron	ENST00000253669	ENST00000585885		TCGA	RV	SARC	TCGA-DX-A8BL-01A	HAUS8	chr19	17184084	-	QTRT1	chr19	10822837	+
In-frame	ENST00000448593	ENST00000250237		TCGA	RV	SARC	TCGA-DX-A8BL-01A	HAUS8	chr19	17184084	-	QTRT1	chr19	10822837	+
5CDS-intron	ENST00000448593	ENST00000585885		TCGA	RV	SARC	TCGA-DX-A8BL-01A	HAUS8	chr19	17184084	-	QTRT1	chr19	10822837	+
5UTR-3CDS	ENST00000593360	ENST00000250237		TCGA	RV	SARC	TCGA-DX-A8BL-01A	HAUS8	chr19	17184084	-	QTRT1	chr19	10822837	+
5UTR-intron	ENST00000593360	ENST00000585885		TCGA	RV	SARC	TCGA-DX-A8BL-01A	HAUS8	chr19	17184084	-	QTRT1	chr19	10822837	+
intron-3CDS	ENST00000555003	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000555003	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000555003	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000555003	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-intron	ENST00000555003	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
5UTR-3CDS	ENST00000441545	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
5UTR-3CDS	ENST00000441545	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
5UTR-3CDS	ENST00000441545	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
5UTR-3CDS	ENST00000441545	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
5UTR-intron	ENST00000441545	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000378817	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000378817	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000378817	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000378817	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-intron	ENST00000378817	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000318041	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000318041	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000318041	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000318041	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-intron	ENST00000318041	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000478802	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000478802	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000478802	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000478802	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-intron	ENST00000478802	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000602473	ENST00000396328		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000602473	ENST00000557913		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000602473	ENST00000360509		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000602473	ENST00000559418		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
intron-intron	ENST00000602473	ENST00000567224		TCGA	RV	SARC	TCGA-DX-A1KY-01A	IL11RA	chr9	34652230	+	WDR72	chr15	53889471	-
5CDS-5UTR	ENST00000339362	ENST00000520356		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000339362	ENST00000520727		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000339362	ENST00000429442		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000339362	ENST00000377838		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000339362	ENST00000520214		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000339362	ENST00000523399		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-intron	ENST00000339362	ENST00000517307		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000261908	ENST00000520356		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000261908	ENST00000520727		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000261908	ENST00000429442		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000261908	ENST00000377838		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000261908	ENST00000520214		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000261908	ENST00000523399		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-intron	ENST00000261908	ENST00000517307		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000558964	ENST00000520356		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000558964	ENST00000520727		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000558964	ENST00000429442		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000558964	ENST00000377838		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000558964	ENST00000520214		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000558964	ENST00000523399		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-intron	ENST00000558964	ENST00000517307		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000560262	ENST00000520356		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000560262	ENST00000520727		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000560262	ENST00000429442		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000560262	ENST00000377838		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000560262	ENST00000520214		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-5UTR	ENST00000560262	ENST00000523399		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
5CDS-intron	ENST00000560262	ENST00000517307		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-5UTR	ENST00000560352	ENST00000520356		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-5UTR	ENST00000560352	ENST00000520727		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-5UTR	ENST00000560352	ENST00000429442		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-5UTR	ENST00000560352	ENST00000377838		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-5UTR	ENST00000560352	ENST00000520214		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-5UTR	ENST00000560352	ENST00000523399		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
intron-intron	ENST00000560352	ENST00000517307		TCGA	RV	SARC	TCGA-MB-A8JK-01A	NEO1	chr15	73428368	+	ZFAT	chr8	135669980	-
Frame-shit	ENST00000380087	ENST00000368236		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
Frame-shit	ENST00000380087	ENST00000368237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
5CDS-intron	ENST00000380087	ENST00000478081		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
intron-3CDS	ENST00000380084	ENST00000368236		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
intron-3CDS	ENST00000380084	ENST00000368237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
intron-intron	ENST00000380084	ENST00000478081		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
Frame-shit	ENST00000404022	ENST00000368236		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
Frame-shit	ENST00000404022	ENST00000368237		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
5CDS-intron	ENST00000404022	ENST00000478081		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RBBP7	chrX	16888161	-	TTC24	chr1	156552023	+
intron-3CDS	ENST00000456518	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000456518	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000456518	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000456518	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000456518	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000397174	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000397174	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000397174	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000397174	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000397174	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000402904	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000402904	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000402904	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000402904	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000402904	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000361191	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000361191	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000361191	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000361191	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000361191	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000397171	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000397171	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000397171	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000397171	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000397171	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000361705	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000361705	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000361705	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000361705	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000361705	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000326197	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000326197	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000326197	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000326197	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000326197	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000372595	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000372595	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000372595	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000372595	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000372595	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000337495	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000337495	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000337495	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-5UTR	ENST00000337495	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-5UTR	ENST00000337495	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000372596	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000372596	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000372596	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-5UTR	ENST00000372596	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-5UTR	ENST00000372596	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000372597	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000372597	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-3CDS	ENST00000372597	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-5UTR	ENST00000372597	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
5UTR-5UTR	ENST00000372597	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000472037	ENST00000546424		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000472037	ENST00000333868		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-3CDS	ENST00000472037	ENST00000348549		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000472037	ENST00000375890		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
intron-5UTR	ENST00000472037	ENST00000469637		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SCMH1	chr1	41707731	-	CASP9	chr1	15844890	-
In-frame	ENST00000256062	ENST00000247843		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
In-frame	ENST00000256062	ENST00000548020		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000551659	ENST00000247843		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000551659	ENST00000548020		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000552618	ENST00000247843		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000552618	ENST00000548020		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
5UTR-3CDS	ENST00000319685	ENST00000247843		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
5UTR-3CDS	ENST00000319685	ENST00000548020		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000539277	ENST00000247843		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000539277	ENST00000548020		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
In-frame	ENST00000381224	ENST00000247843		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
In-frame	ENST00000381224	ENST00000548020		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC1	chr12	29709790	-	YEATS4	chr12	69783927	+
Frame-shit	ENST00000525566	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000525566	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000429002	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000429002	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000503506	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000503506	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000526691	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000526691	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000388854	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000388854	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000354940	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000354940	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000526390	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000526390	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000529546	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000529546	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000540716	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000540716	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000524698	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000524698	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000542918	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000542918	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000378070	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000378070	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000397736	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000397736	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000427956	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000427956	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
Frame-shit	ENST00000526950	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5CDS-intron	ENST00000526950	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
intron-3CDS	ENST00000526006	ENST00000258538		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
intron-intron	ENST00000526006	ENST00000549713		TCGA	RV	SARC	TCGA-DX-A48N-01A	TXNRD1	chr12	104721449	+	SLC41A2	chr12	105239752	-
5UTR-5UTR	ENST00000525842	ENST00000299293		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000525842	ENST00000549921		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000525842	ENST00000550389		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000525842	ENST00000397997		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000397753	ENST00000299293		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000397753	ENST00000549921		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000397753	ENST00000550389		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000397753	ENST00000397997		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000357899	ENST00000299293		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000357899	ENST00000549921		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000357899	ENST00000550389		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000357899	ENST00000397997		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
intron-5UTR	ENST00000530205	ENST00000299293		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
intron-5UTR	ENST00000530205	ENST00000549921		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
intron-5UTR	ENST00000530205	ENST00000550389		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
intron-5UTR	ENST00000530205	ENST00000397997		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ZBTB44	chr11	130184270	-	FRS2	chr12	69955960	+
5CDS-5UTR	ENST00000311921	ENST00000351325		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000311921	ENST00000589209		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000311921	ENST00000455515		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000311921	ENST00000588715		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000311921	ENST00000588607		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000311921	ENST00000588081		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000544431	ENST00000351325		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000544431	ENST00000589209		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000544431	ENST00000455515		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000544431	ENST00000588715		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000544431	ENST00000588607		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000544431	ENST00000588081		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355898	ENST00000351325		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355898	ENST00000589209		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355898	ENST00000455515		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355898	ENST00000588715		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355898	ENST00000588607		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
5CDS-5UTR	ENST00000355898	ENST00000588081		TCGA	RV	SARC	TCGA-LI-A9QH-01A	ZNF507	chr19	32851524	+	FXYD1	chr19	35630980	+
Frame-shit	ENST00000357103	ENST00000280871		TCGA	RV	SARC	TCGA-DX-A240-01A	ADIPOR2	chr12	1863680	+	SLC2A13	chr12	40442012	-
Frame-shit	ENST00000357103	ENST00000380858		TCGA	RV	SARC	TCGA-DX-A240-01A	ADIPOR2	chr12	1863680	+	SLC2A13	chr12	40442012	-
intron-3CDS	ENST00000544470	ENST00000280871		TCGA	RV	SARC	TCGA-DX-A240-01A	ADIPOR2	chr12	1863680	+	SLC2A13	chr12	40442012	-
intron-3CDS	ENST00000544470	ENST00000380858		TCGA	RV	SARC	TCGA-DX-A240-01A	ADIPOR2	chr12	1863680	+	SLC2A13	chr12	40442012	-
In-frame	ENST00000327087	ENST00000607016		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ANO2	chr12	5915218	-	NUDT3	chr6	34263462	-
In-frame	ENST00000546188	ENST00000607016		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ANO2	chr12	5915218	-	NUDT3	chr6	34263462	-
In-frame	ENST00000356134	ENST00000607016		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ANO2	chr12	5915218	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000538154	ENST00000607016		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ANO2	chr12	5915218	-	NUDT3	chr6	34263462	-
In-frame	ENST00000379141	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
In-frame	ENST00000379141	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000379141	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000379141	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000379141	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000379141	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000379141	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
In-frame	ENST00000320743	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
In-frame	ENST00000320743	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000320743	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000320743	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000320743	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000320743	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000320743	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1KU-01A	LRIG3	chr12	59267837	-	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000315614	ENST00000538513		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000315614	ENST00000250055		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000315614	ENST00000570788		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000399464	ENST00000538513		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000399464	ENST00000250055		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000399464	ENST00000570788		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000570460	ENST00000538513		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000570460	ENST00000250055		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
5CDS-5UTR	ENST00000570460	ENST00000570788		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
intron-5UTR	ENST00000574120	ENST00000538513		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
intron-5UTR	ENST00000574120	ENST00000250055		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
intron-5UTR	ENST00000574120	ENST00000570788		TCGA	RV	SARC	TCGA-X6-A7WC-01A	NEURL4	chr17	7229574	-	SOX15	chr17	7493056	-
In-frame	ENST00000344034	ENST00000335647		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
In-frame	ENST00000344034	ENST00000335643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
In-frame	ENST00000344034	ENST00000367411		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
5CDS-5UTR	ENST00000344034	ENST00000494504		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
Frame-shit	ENST00000350803	ENST00000335647		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
Frame-shit	ENST00000350803	ENST00000335643		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
Frame-shit	ENST00000350803	ENST00000367411		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
5CDS-5UTR	ENST00000350803	ENST00000494504		TCGA	RV	SARC	TCGA-DX-A7EU-01A	PPM1G	chr2	27632170	-	KATNA1	chr6	149919486	-
Frame-shit	ENST00000356208	ENST00000252622		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	RBM38	chr20	55968389	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000356208	ENST00000589532		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	RBM38	chr20	55968389	+	LSM7	chr19	2324195	-
intron-3CDS	ENST00000440234	ENST00000252622		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	RBM38	chr20	55968389	+	LSM7	chr19	2324195	-
intron-5UTR	ENST00000440234	ENST00000589532		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	RBM38	chr20	55968389	+	LSM7	chr19	2324195	-
Frame-shit	ENST00000371219	ENST00000252622		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	RBM38	chr20	55968389	+	LSM7	chr19	2324195	-
5CDS-5UTR	ENST00000371219	ENST00000589532		TCGA	RV	SARC	TCGA-3B-A9HJ-01A	RBM38	chr20	55968389	+	LSM7	chr19	2324195	-
5CDS-intron	ENST00000373212	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000373212	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000373212	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000373212	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000373212	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000373212	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000373212	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
intron-intron	ENST00000481106	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	SH3BGRL	chrX	80554046	+	CBS	chr21	44476011	-
In-frame	ENST00000327367	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000327367	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000327367	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-5UTR	ENST00000327367	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000559092	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000559092	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000559092	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000559092	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000540846	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000540846	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000540846	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000540846	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000439724	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000439724	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000439724	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000439724	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-3CDS	ENST00000537194	ENST00000261880		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000537194	ENST00000538028		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000537194	ENST00000561452		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
intron-5UTR	ENST00000537194	ENST00000542650		TCGA	RV	SARC	TCGA-K1-A42X-01A	SMAD3	chr15	67358698	+	AAGAB	chr15	67495236	-
5CDS-intron	ENST00000401783	ENST00000453658		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000377259		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000377245		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000348208		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000265384		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000535702		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000539225		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000401783	ENST00000498204		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000453658		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000377259		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000377245		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000348208		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000265384		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000535702		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000539225		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374469	ENST00000498204		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000453658		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000377259		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000377245		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000348208		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000265384		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000535702		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000539225		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-intron	ENST00000467821	ENST00000498204		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000453658		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000377259		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000377245		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000348208		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000265384		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000535702		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000539225		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000302728	ENST00000498204		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000453658		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000377259		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000377245		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000348208		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000265384		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000535702		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000539225		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5CDS-intron	ENST00000374461	ENST00000498204		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000453658		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000377259		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000377245		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000348208		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000265384		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000535702		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000539225		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
intron-intron	ENST00000297826	ENST00000498204		TCGA	RV	SARC	TCGA-K1-A6RU-01A	SVEP1	chr9	113275206	-	TJP2	chr9	71864291	+
5UTR-3CDS	ENST00000402886	ENST00000287218		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TEAD3	chr6	35464675	-	ZFAND3	chr6	38084348	+
5UTR-3CDS	ENST00000402886	ENST00000373391		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TEAD3	chr6	35464675	-	ZFAND3	chr6	38084348	+
5UTR-intron	ENST00000402886	ENST00000463847		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TEAD3	chr6	35464675	-	ZFAND3	chr6	38084348	+
5UTR-3CDS	ENST00000338863	ENST00000287218		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TEAD3	chr6	35464675	-	ZFAND3	chr6	38084348	+
5UTR-3CDS	ENST00000338863	ENST00000373391		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TEAD3	chr6	35464675	-	ZFAND3	chr6	38084348	+
5UTR-intron	ENST00000338863	ENST00000463847		TCGA	RV	SARC	TCGA-DX-A8BU-01A	TEAD3	chr6	35464675	-	ZFAND3	chr6	38084348	+
5UTR-3CDS	ENST00000311160	ENST00000371979		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-5UTR	ENST00000311160	ENST00000251943		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-5UTR	ENST00000311160	ENST00000394780		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-intron	ENST00000311160	ENST00000470971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-3CDS	ENST00000355730	ENST00000371979		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000355730	ENST00000251943		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000355730	ENST00000394780		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-intron	ENST00000355730	ENST00000470971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-3CDS	ENST00000398879	ENST00000371979		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000398879	ENST00000251943		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000398879	ENST00000394780		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-intron	ENST00000398879	ENST00000470971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-3CDS	ENST00000442536	ENST00000371979		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000442536	ENST00000251943		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000442536	ENST00000394780		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-intron	ENST00000442536	ENST00000470971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-3CDS	ENST00000458317	ENST00000371979		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000458317	ENST00000251943		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-5UTR	ENST00000458317	ENST00000394780		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
intron-intron	ENST00000458317	ENST00000470971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-3CDS	ENST00000474346	ENST00000371979		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-5UTR	ENST00000474346	ENST00000251943		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-5UTR	ENST00000474346	ENST00000394780		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
5UTR-intron	ENST00000474346	ENST00000470971		TCGA	RV	SARC	TCGA-FX-A2QS-01A	TNS3	chr7	47621649	-	ALG13	chrX	110925360	+
In-frame	ENST00000336976	ENST00000310054		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ZNF224	chr19	44602041	+	CYP2S1	chr19	41711863	+
In-frame	ENST00000336976	ENST00000542619		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ZNF224	chr19	44602041	+	CYP2S1	chr19	41711863	+
intron-3CDS	ENST00000586978	ENST00000310054		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ZNF224	chr19	44602041	+	CYP2S1	chr19	41711863	+
intron-3CDS	ENST00000586978	ENST00000542619		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ZNF224	chr19	44602041	+	CYP2S1	chr19	41711863	+
In-frame	ENST00000320610	ENST00000369046		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000320610	ENST00000467262		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000320610	ENST00000369044		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
In-frame	ENST00000253159	ENST00000369046		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000253159	ENST00000467262		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000253159	ENST00000369044		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
3UTR-3CDS	ENST00000583095	ENST00000369046		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
3UTR-3UTR	ENST00000583095	ENST00000467262		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
3UTR-3UTR	ENST00000583095	ENST00000369044		TCGA	RV	SARC	TCGA-K1-A42X-02A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
In-frame	ENST00000395226	ENST00000509093		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000395226	ENST00000264389		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000395226	ENST00000503682		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000395226	ENST00000511653		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
5CDS-intron	ENST00000395226	ENST00000511708		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000264409	ENST00000509093		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000264409	ENST00000264389		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000264409	ENST00000503682		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
In-frame	ENST00000264409	ENST00000511653		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
5CDS-intron	ENST00000264409	ENST00000511708		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
intron-3CDS	ENST00000509044	ENST00000509093		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
intron-3CDS	ENST00000509044	ENST00000264389		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
intron-3CDS	ENST00000509044	ENST00000503682		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
intron-3CDS	ENST00000509044	ENST00000511653		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
intron-intron	ENST00000509044	ENST00000511708		TCGA	RV	SARC	TCGA-K1-A6RV-01A	AGPAT9	chr4	84465755	+	COPS4	chr4	83987591	+
5CDS-3UTR	ENST00000547691	ENST00000474476		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000547691	ENST00000371218		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000547691	ENST00000303721		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000547691	ENST00000371212		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000547691	ENST00000371210		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000552810	ENST00000474476		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000552810	ENST00000371218		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000552810	ENST00000303721		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000552810	ENST00000371212		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000552810	ENST00000371210		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000397838	ENST00000474476		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000397838	ENST00000371218		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000397838	ENST00000303721		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000397838	ENST00000371212		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000397838	ENST00000371210		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000309041	ENST00000474476		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000309041	ENST00000371218		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000309041	ENST00000303721		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000309041	ENST00000371212		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5CDS-3UTR	ENST00000309041	ENST00000371210		TCGA	RV	SARC	TCGA-WK-A8XO-01A	CEP290	chr12	88482809	-	FGGY	chr1	60091660	+
5UTR-intron	ENST00000361654	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-5UTR	ENST00000361654	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000361654	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000361654	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000361654	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000545889	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000545889	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000545889	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000545889	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000545889	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000302528	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000302528	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000302528	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000302528	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000302528	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000358808	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-5UTR	ENST00000358808	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000358808	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000358808	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000358808	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000537178	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-5UTR	ENST00000537178	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000537178	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000537178	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-intron	ENST00000537178	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540338	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000540338	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540338	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540338	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540338	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000536634	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000536634	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000536634	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000536634	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000536634	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540539	ENST00000539068		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000540539	ENST00000536438		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540539	ENST00000357266		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540539	ENST00000540787		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
intron-intron	ENST00000540539	ENST00000542713		TCGA	RV	SARC	TCGA-PC-A5DN-01A	CLIP1	chr12	122907068	-	FKBP5	chr6	35688325	-
5UTR-3CDS	ENST00000228741	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000228741	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000228741	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000228741	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000228741	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000228741	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000552142	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-3CDS	ENST00000552142	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000552142	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000552142	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000552142	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000552142	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
intron-3CDS	ENST00000549529	ENST00000283228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
intron-3CDS	ENST00000549529	ENST00000440835		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549529	ENST00000537619		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549529	ENST00000378778		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549529	ENST00000342084		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
intron-5UTR	ENST00000549529	ENST00000549308		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	PTPRR	chr12	71033057	-
5UTR-5UTR	ENST00000299293	ENST00000244769		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-5UTR	ENST00000299293	ENST00000436367		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-intron	ENST00000299293	ENST00000467008		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-5UTR	ENST00000549921	ENST00000244769		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-5UTR	ENST00000549921	ENST00000436367		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-intron	ENST00000549921	ENST00000467008		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-5UTR	ENST00000550389	ENST00000244769		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-5UTR	ENST00000550389	ENST00000436367		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
5UTR-intron	ENST00000550389	ENST00000467008		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
intron-5UTR	ENST00000397997	ENST00000244769		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
intron-5UTR	ENST00000397997	ENST00000436367		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
intron-intron	ENST00000397997	ENST00000467008		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FRS2	chr12	69864310	+	ATXN1	chr6	16522919	-
In-frame	ENST00000392825	ENST00000419482		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
In-frame	ENST00000392825	ENST00000444564		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
In-frame	ENST00000392825	ENST00000438570		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
5CDS-3UTR	ENST00000392825	ENST00000468008		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
In-frame	ENST00000409237	ENST00000419482		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
In-frame	ENST00000409237	ENST00000444564		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
In-frame	ENST00000409237	ENST00000438570		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
5CDS-3UTR	ENST00000409237	ENST00000468008		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
intron-3CDS	ENST00000487047	ENST00000419482		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
intron-3CDS	ENST00000487047	ENST00000444564		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
intron-3CDS	ENST00000487047	ENST00000438570		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
intron-3UTR	ENST00000487047	ENST00000468008		TCGA	RV	SARC	TCGA-K1-A6RV-01A	GALNT13	chr2	154997018	+	SMYD1	chr2	88383835	+
In-frame	ENST00000078429	ENST00000434316		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GNA11	chr19	3094785	+	TMCO3	chr13	114174931	+
5CDS-intron	ENST00000078429	ENST00000375391		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GNA11	chr19	3094785	+	TMCO3	chr13	114174931	+
5CDS-3UTR	ENST00000078429	ENST00000474393		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GNA11	chr19	3094785	+	TMCO3	chr13	114174931	+
intron-3CDS	ENST00000586180	ENST00000434316		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GNA11	chr19	3094785	+	TMCO3	chr13	114174931	+
intron-intron	ENST00000586180	ENST00000375391		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GNA11	chr19	3094785	+	TMCO3	chr13	114174931	+
intron-3UTR	ENST00000586180	ENST00000474393		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GNA11	chr19	3094785	+	TMCO3	chr13	114174931	+
Frame-shit	ENST00000336470	ENST00000311550		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000336470	ENST00000541819		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000336470	ENST00000299267		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000336470	ENST00000400188		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000336470	ENST00000545868		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
5CDS-intron	ENST00000336470	ENST00000557641		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000360845	ENST00000311550		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000360845	ENST00000541819		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000360845	ENST00000299267		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000360845	ENST00000400188		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
Frame-shit	ENST00000360845	ENST00000545868		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
5CDS-intron	ENST00000360845	ENST00000557641		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
3UTR-3CDS	ENST00000489691	ENST00000311550		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
3UTR-3CDS	ENST00000489691	ENST00000541819		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
3UTR-3CDS	ENST00000489691	ENST00000299267		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
3UTR-3CDS	ENST00000489691	ENST00000400188		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
3UTR-3CDS	ENST00000489691	ENST00000545868		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
3UTR-intron	ENST00000489691	ENST00000557641		TCGA	RV	SARC	TCGA-UE-A6QU-01A	GNL3L	chrX	54559018	+	GABRB3	chr15	26828561	-
5CDS-intron	ENST00000409016	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409016	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409016	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409851	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409851	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409851	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409463	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409463	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409463	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000074304	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000074304	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000074304	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000545415	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000545415	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000545415	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409540	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409540	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000409540	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000523221	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000523221	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
5CDS-intron	ENST00000523221	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000467042	ENST00000429723		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000467042	ENST00000379715		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
intron-intron	ENST00000467042	ENST00000507463		TCGA	RV	SARC	TCGA-DX-A1L2-01A	INPP4A	chr2	99193606	+	EEF1E1	chr6	8080263	-
In-frame	ENST00000278612	ENST00000328965		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	NPAT	chr11	108093227	-	OAF	chr11	120096370	+
5CDS-intron	ENST00000278612	ENST00000531220		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	NPAT	chr11	108093227	-	OAF	chr11	120096370	+
5CDS-intron	ENST00000278612	ENST00000534735		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	NPAT	chr11	108093227	-	OAF	chr11	120096370	+
5UTR-3CDS	ENST00000610253	ENST00000328965		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	NPAT	chr11	108093227	-	OAF	chr11	120096370	+
5UTR-intron	ENST00000610253	ENST00000531220		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	NPAT	chr11	108093227	-	OAF	chr11	120096370	+
5UTR-intron	ENST00000610253	ENST00000534735		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	NPAT	chr11	108093227	-	OAF	chr11	120096370	+
In-frame	ENST00000449359	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000449359	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000449359	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000449359	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000449359	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000449359	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000564441	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
intron-3CDS	ENST00000564441	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000564441	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000564441	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
intron-3UTR	ENST00000564441	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
intron-intron	ENST00000564441	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000441236	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000441236	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000441236	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000441236	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000441236	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000441236	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000348497	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000348497	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000348497	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000348497	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000348497	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000348497	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000339507	ENST00000253861		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
In-frame	ENST00000339507	ENST00000539845		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000339507	ENST00000393161		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000339507	ENST00000545148		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-3UTR	ENST00000339507	ENST00000460346		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5CDS-intron	ENST00000339507	ENST00000541309		TCGA	RV	SARC	TCGA-DX-A7EF-01A	PRMT7	chr16	68380183	+	EXOC4	chr7	133580352	+
5UTR-3CDS	ENST00000588552	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5UTR-5UTR	ENST00000588552	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5UTR-5UTR	ENST00000588552	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
Frame-shit	ENST00000262963	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000262963	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000262963	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
Frame-shit	ENST00000372412	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000372412	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000372412	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
Frame-shit	ENST00000348075	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000348075	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000348075	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
Frame-shit	ENST00000357368	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000357368	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000357368	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
Frame-shit	ENST00000353284	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000353284	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000353284	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
In-frame	ENST00000587303	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000587303	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000587303	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
In-frame	ENST00000588012	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000588012	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000588012	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
In-frame	ENST00000592099	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000592099	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000592099	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
In-frame	ENST00000590509	ENST00000301455		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000590509	ENST00000541807		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
5CDS-5UTR	ENST00000590509	ENST00000393962		TCGA	RV	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8430838	+
In-frame	ENST00000378536	ENST00000401084		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
In-frame	ENST00000378536	ENST00000264203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
In-frame	ENST00000378536	ENST00000375142		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
In-frame	ENST00000378536	ENST00000433834		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
In-frame	ENST00000378536	ENST00000264202		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
5CDS-5UTR	ENST00000378536	ENST00000482808		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
5CDS-5UTR	ENST00000378536	ENST00000375144		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-3CDS	ENST00000478223	ENST00000401084		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-3CDS	ENST00000478223	ENST00000264203		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-3CDS	ENST00000478223	ENST00000375142		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-3CDS	ENST00000478223	ENST00000433834		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-3CDS	ENST00000478223	ENST00000264202		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-5UTR	ENST00000478223	ENST00000482808		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
intron-5UTR	ENST00000478223	ENST00000375144		TCGA	RV	SARC	TCGA-DX-A7EU-01A	SKI	chr1	2161174	+	CAPZB	chr1	19746244	-
5CDS-intron	ENST00000550703	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000550703	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000550703	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000550703	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000550703	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000551590	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000551590	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000551590	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000551590	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000551590	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000397655	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000397655	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000397655	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000397655	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000397655	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000471804	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000471804	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000471804	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000471804	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000471804	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5UTR-intron	ENST00000377654	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5UTR-5UTR	ENST00000377654	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5UTR-5UTR	ENST00000377654	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5UTR-5UTR	ENST00000377654	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5UTR-intron	ENST00000377654	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000397659	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000397659	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000397659	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-5UTR	ENST00000397659	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5CDS-intron	ENST00000397659	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
intron-intron	ENST00000551555	ENST00000474476		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
intron-5UTR	ENST00000551555	ENST00000371218		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
intron-5UTR	ENST00000551555	ENST00000303721		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
intron-5UTR	ENST00000551555	ENST00000371212		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
intron-intron	ENST00000551555	ENST00000371210		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111052207	+	FGGY	chr1	59787208	+
5UTR-5UTR	ENST00000293648	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000293648	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000293648	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000293648	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000448622	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000448622	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000448622	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000448622	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453372	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453372	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453372	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453372	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000541032	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000541032	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000541032	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000541032	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000590155	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000590155	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000590155	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000590155	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453792	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453792	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453792	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000453792	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000537617	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000537617	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000537617	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000537617	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000587392	ENST00000548804		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000587392	ENST00000337737		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000587392	ENST00000548198		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
5UTR-5UTR	ENST00000587392	ENST00000551632		TCGA	RV	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57999973	+
Frame-shit	ENST00000366535	ENST00000298892		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
Frame-shit	ENST00000366535	ENST00000395805		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
Frame-shit	ENST00000366535	ENST00000251071		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
Frame-shit	ENST00000366535	ENST00000308433		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
Frame-shit	ENST00000366535	ENST00000417045		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
5CDS-intron	ENST00000366535	ENST00000538387		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
intron-3CDS	ENST00000462358	ENST00000298892		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
intron-3CDS	ENST00000462358	ENST00000395805		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
intron-3CDS	ENST00000462358	ENST00000251071		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
intron-3CDS	ENST00000462358	ENST00000308433		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
intron-3CDS	ENST00000462358	ENST00000417045		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
intron-intron	ENST00000462358	ENST00000538387		TCGA	RV	SARC	TCGA-DX-AB2H-01A	ADSS	chr1	244579283	-	CAPRIN2	chr12	30864563	-
5CDS-5UTR	ENST00000354775	ENST00000367889		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000354775	ENST00000367888		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000354775	ENST00000367885		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000354775	ENST00000367884		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000354775	ENST00000367883		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000354775	ENST00000367886		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-intron	ENST00000354775	ENST00000461759		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000538148	ENST00000367889		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000538148	ENST00000367888		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000538148	ENST00000367885		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000538148	ENST00000367884		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000538148	ENST00000367883		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-5UTR	ENST00000538148	ENST00000367886		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-intron	ENST00000538148	ENST00000461759		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-5UTR	ENST00000461664	ENST00000367889		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-5UTR	ENST00000461664	ENST00000367888		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-5UTR	ENST00000461664	ENST00000367885		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-5UTR	ENST00000461664	ENST00000367884		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-5UTR	ENST00000461664	ENST00000367883		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-5UTR	ENST00000461664	ENST00000367886		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
intron-intron	ENST00000461664	ENST00000461759		TCGA	RV	SARC	TCGA-X6-A8C2-01A	ALDH9A1	chr1	165648679	-	MGST3	chr1	165619078	+
5CDS-3UTR	ENST00000308448	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000308448	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000308448	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000328142	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000328142	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000328142	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000400215	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000400215	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000400215	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541004	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541004	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541004	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000495903	ENST00000593699		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000495903	ENST00000372499		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000495903	ENST00000496424		TCGA	RV	SARC	TCGA-DX-A8BU-01A	ATAD1	chr10	89544227	-	C10orf11	chr10	78316967	+
intron-3CDS	ENST00000348959	ENST00000539993		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000348959	ENST00000518698		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000348959	ENST00000349492		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000348959	ENST00000523686		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000348959	ENST00000348340		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000348959	ENST00000337103		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000348959	ENST00000325233		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000261173	ENST00000539993		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000261173	ENST00000518698		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000261173	ENST00000349492		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000261173	ENST00000523686		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000261173	ENST00000348340		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000261173	ENST00000337103		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000261173	ENST00000325233		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000359142	ENST00000539993		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000359142	ENST00000518698		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000359142	ENST00000349492		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000359142	ENST00000523686		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000359142	ENST00000348340		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000359142	ENST00000337103		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000359142	ENST00000325233		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000428670	ENST00000539993		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000428670	ENST00000518698		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000428670	ENST00000349492		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000428670	ENST00000523686		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000428670	ENST00000348340		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000428670	ENST00000337103		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000428670	ENST00000325233		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000393164	ENST00000539993		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-3CDS	ENST00000393164	ENST00000518698		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000393164	ENST00000349492		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000393164	ENST00000523686		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000393164	ENST00000348340		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000393164	ENST00000337103		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
intron-intron	ENST00000393164	ENST00000325233		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	C8orf34	chr8	69621229	+
5CDS-5UTR	ENST00000235307	ENST00000469606		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
5CDS-5UTR	ENST00000235307	ENST00000366994		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
5CDS-5UTR	ENST00000235307	ENST00000366993		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
5CDS-5UTR	ENST00000235307	ENST00000366992		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
5CDS-5UTR	ENST00000235307	ENST00000440600		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
3UTR-5UTR	ENST00000367514	ENST00000469606		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
3UTR-5UTR	ENST00000367514	ENST00000366994		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
3UTR-5UTR	ENST00000367514	ENST00000366993		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
3UTR-5UTR	ENST00000367514	ENST00000366992		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
3UTR-5UTR	ENST00000367514	ENST00000440600		TCGA	RV	SARC	TCGA-DX-A1L0-01A	C1orf21	chr1	184567595	+	INTS7	chr1	212126043	-
3UTR-3CDS	ENST00000435070	ENST00000444921		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000435070	ENST00000339582		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000435070	ENST00000358373		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000435070	ENST00000405249		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-5UTR	ENST00000435070	ENST00000480995		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000456847	ENST00000444921		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000456847	ENST00000339582		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000456847	ENST00000358373		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000456847	ENST00000405249		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-5UTR	ENST00000456847	ENST00000480995		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000266679	ENST00000444921		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000266679	ENST00000339582		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000266679	ENST00000358373		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-3CDS	ENST00000266679	ENST00000405249		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
3UTR-5UTR	ENST00000266679	ENST00000480995		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
intron-3CDS	ENST00000550987	ENST00000444921		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
intron-3CDS	ENST00000550987	ENST00000339582		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
intron-3CDS	ENST00000550987	ENST00000358373		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
intron-3CDS	ENST00000550987	ENST00000405249		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
intron-5UTR	ENST00000550987	ENST00000480995		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
Frame-shit	ENST00000551516	ENST00000444921		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
Frame-shit	ENST00000551516	ENST00000339582		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
Frame-shit	ENST00000551516	ENST00000358373		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
Frame-shit	ENST00000551516	ENST00000405249		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
5CDS-5UTR	ENST00000551516	ENST00000480995		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CPSF6	chr12	69656342	+	GRM8	chr7	126746766	-
Frame-shit	ENST00000299314	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000299314	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000549940	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000549940	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000392919	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000392919	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000549165	ENST00000261180		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000549165	ENST00000549138		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GNPTAB	chr12	102224337	-	TRHDE	chr12	72680461	+
5CDS-5UTR	ENST00000356175	ENST00000537330		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000356175	ENST00000570891		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000356175	ENST00000306801		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000356175	ENST00000544334		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000356175	ENST00000575542		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000358273	ENST00000537330		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000358273	ENST00000570891		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000358273	ENST00000306801		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000358273	ENST00000544334		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000358273	ENST00000575542		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000431387	ENST00000537330		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000431387	ENST00000570891		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000431387	ENST00000306801		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-5UTR	ENST00000431387	ENST00000544334		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000431387	ENST00000575542		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000581113	ENST00000537330		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000581113	ENST00000570891		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000581113	ENST00000306801		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000581113	ENST00000544334		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-intron	ENST00000581113	ENST00000575542		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000417592	ENST00000537330		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000417592	ENST00000570891		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000417592	ENST00000306801		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000417592	ENST00000544334		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-intron	ENST00000417592	ENST00000575542		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000444181	ENST00000537330		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000444181	ENST00000570891		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000444181	ENST00000306801		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-5UTR	ENST00000444181	ENST00000544334		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
intron-intron	ENST00000444181	ENST00000575542		TCGA	RV	SARC	TCGA-JV-A75J-01A	NF1	chr17	29422387	+	RPTOR	chr17	78599491	+
5CDS-intron	ENST00000369797	ENST00000481808		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PDCD11	chr10	105166547	+	FBXL15	chr10	104180809	+
5CDS-5UTR	ENST00000369797	ENST00000224862		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PDCD11	chr10	105166547	+	FBXL15	chr10	104180809	+
5CDS-5UTR	ENST00000369797	ENST00000369956		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PDCD11	chr10	105166547	+	FBXL15	chr10	104180809	+
intron-intron	ENST00000490787	ENST00000481808		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PDCD11	chr10	105166547	+	FBXL15	chr10	104180809	+
intron-5UTR	ENST00000490787	ENST00000224862		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PDCD11	chr10	105166547	+	FBXL15	chr10	104180809	+
intron-5UTR	ENST00000490787	ENST00000369956		TCGA	RV	SARC	TCGA-K1-A6RV-01A	PDCD11	chr10	105166547	+	FBXL15	chr10	104180809	+
In-frame	ENST00000324862	ENST00000369135		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
5CDS-5UTR	ENST00000324862	ENST00000479905		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
intron-3CDS	ENST00000543398	ENST00000369135		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
intron-5UTR	ENST00000543398	ENST00000479905		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
In-frame	ENST00000414970	ENST00000369135		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
5CDS-5UTR	ENST00000414970	ENST00000479905		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
3UTR-3CDS	ENST00000467329	ENST00000369135		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
3UTR-5UTR	ENST00000467329	ENST00000479905		TCGA	RV	SARC	TCGA-DX-A23U-01A	PRPF3	chr1	150318967	+	OTUD7B	chr1	149943179	-
In-frame	ENST00000379494	ENST00000545074		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
In-frame	ENST00000379494	ENST00000540249		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
In-frame	ENST00000379494	ENST00000379806		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
In-frame	ENST00000379494	ENST00000422285		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
In-frame	ENST00000379494	ENST00000379805		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000379494	ENST00000379804		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000379494	ENST00000478795		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-3CDS	ENST00000494525	ENST00000545074		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-3CDS	ENST00000494525	ENST00000540249		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-3CDS	ENST00000494525	ENST00000379806		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-3CDS	ENST00000494525	ENST00000422285		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-3CDS	ENST00000494525	ENST00000379805		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-intron	ENST00000494525	ENST00000379804		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-intron	ENST00000494525	ENST00000478795		TCGA	RV	SARC	TCGA-QQ-A5VA-01A	SMPX	chrX	21761868	-	PDHA1	chrX	19367430	+
5UTR-5UTR	ENST00000322366	ENST00000429150		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000416623		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000392309		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000392307		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000437412		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000444202		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000493898		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000360537		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000322366	ENST00000354765		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-intron	ENST00000322366	ENST00000367572		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-intron	ENST00000322366	ENST00000367571		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000429150		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000416623		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000392309		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000392307		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000437412		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000444202		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000493898		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000360537		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-5UTR	ENST00000295888	ENST00000354765		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-intron	ENST00000295888	ENST00000367572		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
5UTR-intron	ENST00000295888	ENST00000367571		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000429150		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000416623		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000392309		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000392307		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000437412		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000444202		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000493898		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000360537		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-5UTR	ENST00000512267	ENST00000354765		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-intron	ENST00000512267	ENST00000367572		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
intron-intron	ENST00000512267	ENST00000367571		TCGA	RV	SARC	TCGA-HB-A3YV-01A	WDFY3	chr4	85887362	-	PLAGL1	chr6	144290115	-
Frame-shit	ENST00000521891	ENST00000521425		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000521891	ENST00000262213		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000521891	ENST00000536748		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
5CDS-intron	ENST00000521891	ENST00000521049		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000517683	ENST00000521425		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000517683	ENST00000262213		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
In-frame	ENST00000517683	ENST00000536748		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
5CDS-intron	ENST00000517683	ENST00000521049		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000050961	ENST00000521425		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000050961	ENST00000262213		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000050961	ENST00000536748		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
5CDS-intron	ENST00000050961	ENST00000521049		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000455469	ENST00000521425		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000455469	ENST00000262213		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000455469	ENST00000536748		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
5CDS-intron	ENST00000455469	ENST00000521049		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000518282	ENST00000521425		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000518282	ENST00000262213		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
Frame-shit	ENST00000518282	ENST00000536748		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
5CDS-intron	ENST00000518282	ENST00000521049		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ZFHX4	chr8	77690675	+	TRAM1	chr8	71487240	-
5CDS-5UTR	ENST00000284268	ENST00000450943		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000354888		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000393108		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000393110		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000393106		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000393107		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000409811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
5CDS-5UTR	ENST00000284268	ENST00000425223		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000450943		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000354888		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000393108		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000393110		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000393106		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000393107		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000409811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000535119	ENST00000425223		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000450943		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000354888		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000393108		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000393110		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000393106		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000393107		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000409811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-5UTR	ENST00000503939	ENST00000425223		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	ANKH	chr5	14871461	-	STEAP3	chr2	120003065	+
intron-3CDS	ENST00000348959	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000348959	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000348959	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-intron	ENST00000348959	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000261173	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000261173	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000261173	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-intron	ENST00000261173	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000359142	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000359142	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000359142	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-intron	ENST00000359142	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000428670	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000428670	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000428670	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-intron	ENST00000428670	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000393164	ENST00000545145		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000393164	ENST00000392561		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-3CDS	ENST00000393164	ENST00000261741		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
intron-intron	ENST00000393164	ENST00000553232		TCGA	RV	SARC	TCGA-3B-A9HO-01A	ATP2B1	chr12	90102996	-	RBM19	chr12	114282593	-
5CDS-3UTR	ENST00000471642	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000471642	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000471642	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000471642	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000471642	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000368336	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000368336	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000368336	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000368336	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000368336	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000343043	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000343043	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000343043	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000343043	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000343043	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
3UTR-3UTR	ENST00000496863	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
3UTR-3UTR	ENST00000496863	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
3UTR-3UTR	ENST00000496863	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
3UTR-intron	ENST00000496863	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
3UTR-intron	ENST00000496863	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000535183	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000535183	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000535183	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000535183	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000535183	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
intron-3UTR	ENST00000421487	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
intron-3UTR	ENST00000421487	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
intron-3UTR	ENST00000421487	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
intron-intron	ENST00000421487	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
intron-intron	ENST00000421487	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000465375	ENST00000492220		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000465375	ENST00000401000		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000465375	ENST00000539519		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000465375	ENST00000369067		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000465375	ENST00000369068		TCGA	RV	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155691409	+	RPRD2	chr1	150437003	+
In-frame	ENST00000403681	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000403681	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000541363	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393577	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000393578	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000425208	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000536545	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000359282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000603815		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000437231		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000447282		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000549863		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000359462		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000546463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000552296		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000552819		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000455667		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000439930		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000548933		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
In-frame	ENST00000354636	ENST00000541275		TCGA	RV	SARC	TCGA-DX-AB2G-01A	HMGA2	chr12	66232349	+	PCBP2	chr12	53856277	+
Frame-shit	ENST00000333003	ENST00000538010		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
Frame-shit	ENST00000333003	ENST00000261822		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
5UTR-3CDS	ENST00000545833	ENST00000538010		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
5UTR-3CDS	ENST00000545833	ENST00000261822		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
Frame-shit	ENST00000393101	ENST00000538010		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
Frame-shit	ENST00000393101	ENST00000261822		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
Frame-shit	ENST00000330677	ENST00000538010		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
Frame-shit	ENST00000330677	ENST00000261822		TCGA	RV	SARC	TCGA-DX-A7EI-01A	NR2C1	chr12	95461107	-	BCL7A	chr12	122468606	+
In-frame	ENST00000549396	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000550584	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000549325	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
intron-3CDS	ENST00000545296	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000550359	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000407050	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000333447	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000548586	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000443686	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000552948	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
In-frame	ENST00000541570	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000541017	ENST00000258111		TCGA	RV	SARC	TCGA-DX-AB2G-01A	PPFIA2	chr12	81719556	-	KCNMB4	chr12	70824265	+
5UTR-3CDS	ENST00000304685	ENST00000294868		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
5UTR-3CDS	ENST00000304685	ENST00000287713		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
5UTR-intron	ENST00000304685	ENST00000473046		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
5UTR-3CDS	ENST00000536277	ENST00000294868		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
5UTR-3CDS	ENST00000536277	ENST00000287713		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
5UTR-intron	ENST00000536277	ENST00000473046		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
intron-3CDS	ENST00000360851	ENST00000294868		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
intron-3CDS	ENST00000360851	ENST00000287713		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
intron-intron	ENST00000360851	ENST00000473046		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
intron-3CDS	ENST00000539189	ENST00000294868		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
intron-3CDS	ENST00000539189	ENST00000287713		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
intron-intron	ENST00000539189	ENST00000473046		TCGA	RV	SARC	TCGA-DX-AB2V-01A	RGL1	chr1	183605636	+	NMNAT2	chr1	183247764	-
Frame-shit	ENST00000376705	ENST00000375915		TCGA	RV	SARC	TCGA-KD-A5QT-01A	HS6ST3	chr13	96743823	+	FAM155A	chr13	107823134	-
Frame-shit	ENST00000421865	ENST00000287022		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000421865	ENST00000517523		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000421865	ENST00000518406		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
5CDS-intron	ENST00000421865	ENST00000523920		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
intron-3CDS	ENST00000498257	ENST00000287022		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
intron-intron	ENST00000498257	ENST00000517523		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
intron-intron	ENST00000498257	ENST00000518406		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
intron-intron	ENST00000498257	ENST00000523920		TCGA	RV	SARC	TCGA-DX-A3M1-01A	LAMA2	chr6	129691135	+	UQCRB	chr8	97245455	-
5UTR-3CDS	ENST00000325875	ENST00000373017		TCGA	RV	SARC	TCGA-K1-A6RU-01A	RMI1	chr9	86595806	+	LCN2	chr9	130913917	+
5UTR-3UTR	ENST00000325875	ENST00000470902		TCGA	RV	SARC	TCGA-K1-A6RU-01A	RMI1	chr9	86595806	+	LCN2	chr9	130913917	+
5UTR-3UTR	ENST00000325875	ENST00000540948		TCGA	RV	SARC	TCGA-K1-A6RU-01A	RMI1	chr9	86595806	+	LCN2	chr9	130913917	+
5UTR-3UTR	ENST00000325875	ENST00000277480		TCGA	RV	SARC	TCGA-K1-A6RU-01A	RMI1	chr9	86595806	+	LCN2	chr9	130913917	+
5UTR-3UTR	ENST00000325875	ENST00000373013		TCGA	RV	SARC	TCGA-K1-A6RU-01A	RMI1	chr9	86595806	+	LCN2	chr9	130913917	+
5UTR-3UTR	ENST00000325875	ENST00000372998		TCGA	RV	SARC	TCGA-K1-A6RU-01A	RMI1	chr9	86595806	+	LCN2	chr9	130913917	+
Frame-shit	ENST00000413379	ENST00000601714		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000413379	ENST00000222115		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000413379	ENST00000540069		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
5CDS-intron	ENST00000413379	ENST00000594621		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
intron-3CDS	ENST00000540850	ENST00000601714		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
intron-3CDS	ENST00000540850	ENST00000222115		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
intron-3CDS	ENST00000540850	ENST00000540069		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
intron-intron	ENST00000540850	ENST00000594621		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000598840	ENST00000601714		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000598840	ENST00000222115		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000598840	ENST00000540069		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
5CDS-intron	ENST00000598840	ENST00000594621		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000270225	ENST00000601714		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000270225	ENST00000222115		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000270225	ENST00000540069		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
5CDS-intron	ENST00000270225	ENST00000594621		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000392776	ENST00000601714		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000392776	ENST00000222115		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
Frame-shit	ENST00000392776	ENST00000540069		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
5CDS-intron	ENST00000392776	ENST00000594621		TCGA	RV	SARC	TCGA-DX-A8BU-01A	SAE1	chr19	47634285	+	HAS1	chr19	52223148	-
5UTR-3CDS	ENST00000261167	ENST00000266674		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14956286	-	LGR5	chr12	71898394	+
5UTR-3CDS	ENST00000261167	ENST00000536515		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14956286	-	LGR5	chr12	71898394	+
5UTR-3CDS	ENST00000261167	ENST00000540815		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14956286	-	LGR5	chr12	71898394	+
In-frame	ENST00000531120	ENST00000396197		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
In-frame	ENST00000531120	ENST00000543987		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000531120	ENST00000540666		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000531120	ENST00000535484		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000531120	ENST00000320750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000531120	ENST00000379387		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000531120	ENST00000541984		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000531120	ENST00000300038		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
In-frame	ENST00000524896	ENST00000396197		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
In-frame	ENST00000524896	ENST00000543987		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000524896	ENST00000540666		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000524896	ENST00000535484		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000524896	ENST00000320750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000524896	ENST00000379387		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000524896	ENST00000541984		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
5CDS-intron	ENST00000524896	ENST00000300038		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-3CDS	ENST00000532054	ENST00000396197		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-3CDS	ENST00000532054	ENST00000543987		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-intron	ENST00000532054	ENST00000540666		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-intron	ENST00000532054	ENST00000535484		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-intron	ENST00000532054	ENST00000320750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-intron	ENST00000532054	ENST00000379387		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-intron	ENST00000532054	ENST00000541984		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
intron-intron	ENST00000532054	ENST00000300038		TCGA	RV	SARC	TCGA-DX-A1KU-01A	EIF3M	chr11	32617593	+	UEVLD	chr11	18591924	-
Frame-shit	ENST00000373095	ENST00000358015		TCGA	RV	SARC	TCGA-K1-A6RU-01A	FAM102A	chr9	130742271	-	RAD23B	chr9	110081033	+
Frame-shit	ENST00000373095	ENST00000416373		TCGA	RV	SARC	TCGA-K1-A6RU-01A	FAM102A	chr9	130742271	-	RAD23B	chr9	110081033	+
intron-3CDS	ENST00000373084	ENST00000358015		TCGA	RV	SARC	TCGA-K1-A6RU-01A	FAM102A	chr9	130742271	-	RAD23B	chr9	110081033	+
intron-3CDS	ENST00000373084	ENST00000416373		TCGA	RV	SARC	TCGA-K1-A6RU-01A	FAM102A	chr9	130742271	-	RAD23B	chr9	110081033	+
intron-3CDS	ENST00000300434	ENST00000358015		TCGA	RV	SARC	TCGA-K1-A6RU-01A	FAM102A	chr9	130742271	-	RAD23B	chr9	110081033	+
intron-3CDS	ENST00000300434	ENST00000416373		TCGA	RV	SARC	TCGA-K1-A6RU-01A	FAM102A	chr9	130742271	-	RAD23B	chr9	110081033	+
In-frame	ENST00000524800	ENST00000379374		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000524800	ENST00000537599		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000524800	ENST00000535894		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000524800	ENST00000418858		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
5CDS-intron	ENST00000524800	ENST00000475778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000367900	ENST00000379374		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000367900	ENST00000537599		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000367900	ENST00000535894		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000367900	ENST00000418858		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
5CDS-intron	ENST00000367900	ENST00000475778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000271452	ENST00000379374		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000271452	ENST00000537599		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000271452	ENST00000535894		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
In-frame	ENST00000271452	ENST00000418858		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
5CDS-intron	ENST00000271452	ENST00000475778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
intron-3CDS	ENST00000490881	ENST00000379374		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
intron-3CDS	ENST00000490881	ENST00000537599		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
intron-3CDS	ENST00000490881	ENST00000535894		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
intron-3CDS	ENST00000490881	ENST00000418858		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
intron-intron	ENST00000490881	ENST00000475778		TCGA	RV	SARC	TCGA-DX-A1KY-01A	NUF2	chr1	163310216	+	PHEX	chrX	22151640	+
Frame-shit	ENST00000400556	ENST00000308159		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
Frame-shit	ENST00000400556	ENST00000569842		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
Frame-shit	ENST00000400556	ENST00000564887		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
5CDS-intron	ENST00000400556	ENST00000569595		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
5CDS-intron	ENST00000400556	ENST00000542526		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
Frame-shit	ENST00000400555	ENST00000308159		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
Frame-shit	ENST00000400555	ENST00000569842		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
Frame-shit	ENST00000400555	ENST00000564887		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
5CDS-intron	ENST00000400555	ENST00000569595		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
5CDS-intron	ENST00000400555	ENST00000542526		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
intron-3CDS	ENST00000580583	ENST00000308159		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
intron-3CDS	ENST00000580583	ENST00000569842		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
intron-3CDS	ENST00000580583	ENST00000564887		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
intron-intron	ENST00000580583	ENST00000569595		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
intron-intron	ENST00000580583	ENST00000542526		TCGA	RV	SARC	TCGA-VT-A80G-01A	PPP4R1	chr18	9614224	-	NUP93	chr16	56857619	+
5CDS-5UTR	ENST00000381898	ENST00000434302		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000381898	ENST00000438847		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-3UTR	ENST00000381898	ENST00000604556		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000381898	ENST00000262622		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000333082	ENST00000434302		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000333082	ENST00000438847		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-3UTR	ENST00000333082	ENST00000604556		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000333082	ENST00000262622		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000246015	ENST00000434302		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000246015	ENST00000438847		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-3UTR	ENST00000246015	ENST00000604556		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000246015	ENST00000262622		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000335877	ENST00000434302		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000335877	ENST00000438847		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-3UTR	ENST00000335877	ENST00000604556		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000335877	ENST00000262622		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000438768	ENST00000434302		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000438768	ENST00000438847		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-3UTR	ENST00000438768	ENST00000604556		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
5CDS-5UTR	ENST00000438768	ENST00000262622		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
intron-5UTR	ENST00000484891	ENST00000434302		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
intron-5UTR	ENST00000484891	ENST00000438847		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
intron-3UTR	ENST00000484891	ENST00000604556		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
intron-5UTR	ENST00000484891	ENST00000262622		TCGA	RV	SARC	TCGA-SI-AA8C-01A	PSMF1	chr20	1106293	+	CHST8	chr19	34180082	+
Frame-shit	ENST00000283228	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000283228	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000283228	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000440835	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000440835	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537619	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000537619	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000378778	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000378778	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000342084	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000342084	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
In-frame	ENST00000549308	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000549308	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB35-01A	PTPRR	chr12	71092045	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000267163	ENST00000495013		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000267163	ENST00000258648		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000267163	ENST00000378586		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
intron-intron	ENST00000484879	ENST00000495013		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
intron-intron	ENST00000484879	ENST00000258648		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
intron-5UTR	ENST00000484879	ENST00000378586		TCGA	RV	SARC	TCGA-N1-A6IA-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
Frame-shit	ENST00000548724	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
Frame-shit	ENST00000548724	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000548724	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000548724	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000548724	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000548724	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000548724	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
Frame-shit	ENST00000396700	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
Frame-shit	ENST00000396700	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000396700	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000396700	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000396700	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000396700	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000396700	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000323944	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000323944	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000323944	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000323944	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000323944	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000323944	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000323944	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
Frame-shit	ENST00000419632	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
Frame-shit	ENST00000419632	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000419632	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000419632	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000419632	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000419632	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000419632	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000546511	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000546511	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000546511	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000546511	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000546511	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000546511	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000546511	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000550887	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000550887	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000550887	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000550887	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000550887	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000550887	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000550887	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000358326	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
In-frame	ENST00000358326	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000358326	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000358326	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000358326	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-3UTR	ENST00000358326	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5CDS-intron	ENST00000358326	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-3CDS	ENST00000548369	ENST00000540593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-3CDS	ENST00000548369	ENST00000324593		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-3UTR	ENST00000548369	ENST00000412490		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-3UTR	ENST00000548369	ENST00000442160		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-3UTR	ENST00000548369	ENST00000555044		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-3UTR	ENST00000548369	ENST00000334521		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
intron-intron	ENST00000548369	ENST00000556797		TCGA	RV	SARC	TCGA-DX-A6YT-01A	STXBP6	chr14	25443871	-	ZNF410	chr14	74370663	+
5UTR-3CDS	ENST00000393240	ENST00000566044		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000393240	ENST00000455779		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000393240	ENST00000299167		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000393240	ENST00000323584		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-intron	ENST00000393240	ENST00000567402		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000261205	ENST00000566044		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000261205	ENST00000455779		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000261205	ENST00000299167		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000261205	ENST00000323584		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-intron	ENST00000261205	ENST00000567402		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000457153	ENST00000566044		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000457153	ENST00000455779		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000457153	ENST00000299167		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-3CDS	ENST00000457153	ENST00000323584		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
5UTR-intron	ENST00000457153	ENST00000567402		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000552744	ENST00000566044		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000552744	ENST00000455779		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000552744	ENST00000299167		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000552744	ENST00000323584		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-intron	ENST00000552744	ENST00000567402		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000549454	ENST00000566044		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000549454	ENST00000455779		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000549454	ENST00000299167		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-3CDS	ENST00000549454	ENST00000323584		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
intron-intron	ENST00000549454	ENST00000567402		TCGA	RV	SARC	TCGA-DX-A23R-01A	SYT1	chr12	79258889	+	PHKB	chr16	47722952	+
In-frame	ENST00000225402	ENST00000262325		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
In-frame	ENST00000225402	ENST00000592545		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
In-frame	ENST00000225402	ENST00000538556		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
In-frame	ENST00000225402	ENST00000312678		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
In-frame	ENST00000225402	ENST00000589344		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
In-frame	ENST00000225402	ENST00000537622		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
5CDS-3UTR	ENST00000225402	ENST00000545922		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3CDS	ENST00000590321	ENST00000262325		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3CDS	ENST00000590321	ENST00000592545		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3CDS	ENST00000590321	ENST00000538556		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3CDS	ENST00000590321	ENST00000312678		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3CDS	ENST00000590321	ENST00000589344		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3CDS	ENST00000590321	ENST00000537622		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
intron-3UTR	ENST00000590321	ENST00000545922		TCGA	RV	SARC	TCGA-DX-A8BG-01A	AATF	chr17	35311207	+	AP2B1	chr17	34037253	+
Frame-shit	ENST00000367843	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000367843	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000432587	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000432587	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000312263	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000312263	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000367840	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000367840	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000470919	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
intron-3CDS	ENST00000470919	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	YEATS4	chr12	69783927	+
In-frame	ENST00000301764	ENST00000264932		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
In-frame	ENST00000301764	ENST00000504309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
In-frame	ENST00000301764	ENST00000510361		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
5CDS-intron	ENST00000301764	ENST00000507522		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000450997	ENST00000264932		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000450997	ENST00000504309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000450997	ENST00000510361		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-intron	ENST00000450997	ENST00000507522		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000451943	ENST00000264932		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000451943	ENST00000504309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000451943	ENST00000510361		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-intron	ENST00000451943	ENST00000507522		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000538470	ENST00000264932		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000538470	ENST00000504309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000538470	ENST00000510361		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-intron	ENST00000538470	ENST00000507522		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000545930	ENST00000264932		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000545930	ENST00000504309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-3CDS	ENST00000545930	ENST00000510361		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
intron-intron	ENST00000545930	ENST00000507522		TCGA	RV	SARC	TCGA-3R-A8YX-01A	DDB1	chr11	61080971	-	SDHA	chr5	235259	+
Frame-shit	ENST00000430479	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
Frame-shit	ENST00000430479	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
Frame-shit	ENST00000430479	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000430479	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000430479	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000399357	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000399357	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000399357	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000399357	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000399357	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000420159	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000420159	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000420159	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000420159	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000420159	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000343495	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000343495	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000343495	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000343495	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000343495	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000242066	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000242066	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000242066	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000242066	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000242066	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405192	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405192	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405192	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000405192	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000405192	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405358	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405358	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405358	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000405358	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000405358	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000403527	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000403527	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000403527	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000403527	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000403527	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405218	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405218	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
In-frame	ENST00000405218	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000405218	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5CDS-intron	ENST00000405218	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000403685	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000403685	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-3CDS	ENST00000403685	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000403685	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
intron-intron	ENST00000403685	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5UTR-3CDS	ENST00000476720	ENST00000356860		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5UTR-3CDS	ENST00000476720	ENST00000356253		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5UTR-3CDS	ENST00000476720	ENST00000423588		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5UTR-intron	ENST00000476720	ENST00000464354		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
5UTR-intron	ENST00000476720	ENST00000535308		TCGA	RV	SARC	TCGA-3B-A9HV-01A	ETV1	chr7	14017052	-	CACNA2D1	chr7	81695840	-
3UTR-3CDS	ENST00000474476	ENST00000371586		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
3UTR-3CDS	ENST00000474476	ENST00000284376		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
3UTR-intron	ENST00000474476	ENST00000460261		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
3UTR-5UTR	ENST00000474476	ENST00000438831		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000371218	ENST00000371586		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000371218	ENST00000284376		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-intron	ENST00000371218	ENST00000460261		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-5UTR	ENST00000371218	ENST00000438831		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000303721	ENST00000371586		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000303721	ENST00000284376		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-intron	ENST00000303721	ENST00000460261		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-5UTR	ENST00000303721	ENST00000438831		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000371212	ENST00000371586		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000371212	ENST00000284376		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-intron	ENST00000371212	ENST00000460261		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-5UTR	ENST00000371212	ENST00000438831		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000371210	ENST00000371586		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
Frame-shit	ENST00000371210	ENST00000284376		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-intron	ENST00000371210	ENST00000460261		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
5CDS-5UTR	ENST00000371210	ENST00000438831		TCGA	RV	SARC	TCGA-DX-AB36-01A	FGGY	chr1	60091721	+	CC2D1B	chr1	52828418	-
In-frame	ENST00000415807	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000415807	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000415807	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000415807	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000415807	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000415807	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000336824	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000336824	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000336824	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000336824	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000336824	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000336824	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000416957	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000416957	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000416957	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000416957	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000416957	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000416957	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000392699	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000392699	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000392699	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000392699	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000392699	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000392699	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000421757	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000421757	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000421757	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000421757	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000421757	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000421757	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000423424	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000423424	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000423424	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
In-frame	ENST00000423424	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000423424	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
5CDS-intron	ENST00000423424	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
intron-3CDS	ENST00000476794	ENST00000445105		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
intron-3CDS	ENST00000476794	ENST00000264730		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
intron-3CDS	ENST00000476794	ENST00000454309		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
intron-3CDS	ENST00000476794	ENST00000450716		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
intron-intron	ENST00000476794	ENST00000430714		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
intron-intron	ENST00000476794	ENST00000466144		TCGA	RV	SARC	TCGA-DX-AB2F-01A	FNDC3B	chr3	171851336	+	FGF12	chr3	192078327	-
Frame-shit	ENST00000313608	ENST00000240364		TCGA	RV	SARC	TCGA-SI-A71O-01A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000313608	ENST00000513602		TCGA	RV	SARC	TCGA-SI-A71O-01A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000313608	ENST00000514018		TCGA	RV	SARC	TCGA-SI-A71O-01A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
Frame-shit	ENST00000578444	ENST00000240364		TCGA	RV	SARC	TCGA-SI-A71O-01A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000578444	ENST00000513602		TCGA	RV	SARC	TCGA-SI-A71O-01A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
5CDS-5UTR	ENST00000578444	ENST00000514018		TCGA	RV	SARC	TCGA-SI-A71O-01A	MRPS23	chr17	55926601	-	FAM117A	chr17	47810082	-
Frame-shit	ENST00000274276	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000274276	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000274276	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000274276	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000274276	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000502536	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000502536	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000502536	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000502536	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
Frame-shit	ENST00000502536	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A6BG-01A	OSMR	chr5	38869219	+	DNM3	chr1	172050972	+
In-frame	ENST00000283228	ENST00000536525		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000283228	ENST00000397909		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000283228	ENST00000228327		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000283228	ENST00000266692		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000283228	ENST00000552300		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000283228	ENST00000541270		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000440835	ENST00000536525		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000440835	ENST00000397909		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000440835	ENST00000228327		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000440835	ENST00000266692		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000440835	ENST00000552300		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000440835	ENST00000541270		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
intron-3CDS	ENST00000537619	ENST00000536525		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
intron-3CDS	ENST00000537619	ENST00000397909		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
intron-3CDS	ENST00000537619	ENST00000228327		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
intron-3CDS	ENST00000537619	ENST00000266692		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
intron-intron	ENST00000537619	ENST00000552300		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
intron-intron	ENST00000537619	ENST00000541270		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000378778	ENST00000536525		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000378778	ENST00000397909		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000378778	ENST00000228327		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000378778	ENST00000266692		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000378778	ENST00000552300		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000378778	ENST00000541270		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000342084	ENST00000536525		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000342084	ENST00000397909		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000342084	ENST00000228327		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
In-frame	ENST00000342084	ENST00000266692		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000342084	ENST00000552300		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000342084	ENST00000541270		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
Frame-shit	ENST00000549308	ENST00000536525		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
Frame-shit	ENST00000549308	ENST00000397909		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
Frame-shit	ENST00000549308	ENST00000228327		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
Frame-shit	ENST00000549308	ENST00000266692		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000549308	ENST00000552300		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5CDS-intron	ENST00000549308	ENST00000541270		TCGA	RV	SARC	TCGA-FX-A2QS-01A	PTPRR	chr12	71077907	-	NAV3	chr12	78360009	+
5UTR-5UTR	ENST00000328089	ENST00000373824		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
5UTR-5UTR	ENST00000328089	ENST00000263974		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
5UTR-intron	ENST00000328089	ENST00000471683		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
intron-5UTR	ENST00000357898	ENST00000373824		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
intron-5UTR	ENST00000357898	ENST00000263974		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
intron-intron	ENST00000357898	ENST00000471683		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
intron-5UTR	ENST00000377399	ENST00000373824		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
intron-5UTR	ENST00000377399	ENST00000263974		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
intron-intron	ENST00000377399	ENST00000471683		TCGA	RV	SARC	TCGA-K1-A3PO-01A	SPSB1	chr1	9353130	+	TAF12	chr1	28948677	-
Frame-shit	ENST00000550746	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
Frame-shit	ENST00000550746	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000550746	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000550746	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000550746	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000550746	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000550746	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
Frame-shit	ENST00000319106	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
Frame-shit	ENST00000319106	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000319106	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000319106	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000319106	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000319106	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000319106	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
Frame-shit	ENST00000485960	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
Frame-shit	ENST00000485960	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000485960	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000485960	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000485960	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000485960	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000485960	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-3CDS	ENST00000393309	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-3CDS	ENST00000393309	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-intron	ENST00000393309	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-intron	ENST00000393309	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-intron	ENST00000393309	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-5UTR	ENST00000393309	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
5UTR-intron	ENST00000393309	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-3CDS	ENST00000548679	ENST00000552432		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-3CDS	ENST00000548679	ENST00000547379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000548679	ENST00000549465		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000548679	ENST00000552024		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000548679	ENST00000261187		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-5UTR	ENST00000548679	ENST00000543448		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000548679	ENST00000549588		TCGA	RV	SARC	TCGA-DX-A1L0-01A	TBC1D15	chr12	72266783	+	SLC16A7	chr12	60165000	+
Frame-shit	ENST00000254286	ENST00000419761		TCGA	RV	SARC	TCGA-FX-A76Y-01A	ACTR10	chr14	58667012	+	MKX	chr10	27964483	-
Frame-shit	ENST00000254286	ENST00000375790		TCGA	RV	SARC	TCGA-FX-A76Y-01A	ACTR10	chr14	58667012	+	MKX	chr10	27964483	-
In-frame	ENST00000262061	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000262061	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000262061	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000262061	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000549043	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000549043	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000549043	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000549043	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000552218	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000552218	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000552218	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000552218	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000553231	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000553231	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000553231	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000553231	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000552362	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000552362	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000552362	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000552362	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000455864	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000455864	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000455864	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000455864	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000416254	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000416254	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000416254	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
5UTR-3CDS	ENST00000416254	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000549116	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000549116	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000549116	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000549116	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000551779	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000551779	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
In-frame	ENST00000551779	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000551779	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548281	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548281	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548281	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548281	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548753	ENST00000299314		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548753	ENST00000549940		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548753	ENST00000392919		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
intron-3CDS	ENST00000548753	ENST00000549165		TCGA	RV	SARC	TCGA-DX-A3LS-01A	COPZ1	chr12	54718965	+	GNPTAB	chr12	102190540	-
Frame-shit	ENST00000318080	ENST00000321582		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000318080	ENST00000474723		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
5CDS-intron	ENST00000318080	ENST00000373776		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
intron-3CDS	ENST00000464290	ENST00000321582		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
intron-5UTR	ENST00000464290	ENST00000474723		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
intron-intron	ENST00000464290	ENST00000373776		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
intron-3CDS	ENST00000393384	ENST00000321582		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
intron-5UTR	ENST00000393384	ENST00000474723		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
intron-intron	ENST00000393384	ENST00000373776		TCGA	RV	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11	chr9	124633027	-
5CDS-5UTR	ENST00000399506	ENST00000552551		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000399506	ENST00000293308		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000399506	ENST00000546897		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000399506	ENST00000552150		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-intron	ENST00000399506	ENST00000549198		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000302955	ENST00000552551		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000302955	ENST00000293308		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000302955	ENST00000546897		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000302955	ENST00000552150		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-intron	ENST00000302955	ENST00000549198		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
intron-5UTR	ENST00000399510	ENST00000552551		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
intron-5UTR	ENST00000399510	ENST00000293308		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
intron-5UTR	ENST00000399510	ENST00000546897		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
intron-5UTR	ENST00000399510	ENST00000552150		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
intron-intron	ENST00000399510	ENST00000549198		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000485100	ENST00000552551		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000485100	ENST00000293308		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000485100	ENST00000546897		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-5UTR	ENST00000485100	ENST00000552150		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
5CDS-intron	ENST00000485100	ENST00000549198		TCGA	RV	SARC	TCGA-KD-A5QU-01A	DLG4	chr17	7120437	-	KRT8	chr12	53298811	-
Frame-shit	ENST00000504595	ENST00000280326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
Frame-shit	ENST00000504595	ENST00000503026		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
Frame-shit	ENST00000504595	ENST00000515390		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5CDS-5UTR	ENST00000504595	ENST00000515676		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5CDS-5UTR	ENST00000504595	ENST00000506600		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5UTR-3CDS	ENST00000510662	ENST00000280326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5UTR-3CDS	ENST00000510662	ENST00000503026		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5UTR-3CDS	ENST00000510662	ENST00000515390		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5UTR-5UTR	ENST00000510662	ENST00000515676		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5UTR-5UTR	ENST00000510662	ENST00000506600		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
Frame-shit	ENST00000329673	ENST00000280326		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
Frame-shit	ENST00000329673	ENST00000503026		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
Frame-shit	ENST00000329673	ENST00000515390		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5CDS-5UTR	ENST00000329673	ENST00000515676		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
5CDS-5UTR	ENST00000329673	ENST00000506600		TCGA	RV	SARC	TCGA-DX-A1L3-01A	FBXL7	chr5	15616181	+	CCT5	chr5	10254257	+
intron-3CDS	ENST00000553277	ENST00000545606		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-intron	ENST00000553277	ENST00000539109		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
Frame-shit	ENST00000243077	ENST00000545606		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
5CDS-intron	ENST00000243077	ENST00000539109		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-3CDS	ENST00000338962	ENST00000545606		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-intron	ENST00000338962	ENST00000539109		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-3CDS	ENST00000554174	ENST00000545606		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-intron	ENST00000554174	ENST00000539109		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-3CDS	ENST00000553446	ENST00000545606		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
intron-intron	ENST00000553446	ENST00000539109		TCGA	RV	SARC	TCGA-DX-A3U6-01A	LRP1	chr12	57596320	+	CAND1	chr12	67686402	+
5CDS-5UTR	ENST00000303305	ENST00000402574		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-5UTR	ENST00000303305	ENST00000366918		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-5UTR	ENST00000303305	ENST00000366917		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-3UTR	ENST00000303305	ENST00000485104		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-5UTR	ENST00000552766	ENST00000402574		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-5UTR	ENST00000552766	ENST00000366918		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-5UTR	ENST00000552766	ENST00000366917		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
5CDS-3UTR	ENST00000552766	ENST00000485104		TCGA	RV	SARC	TCGA-DX-A3LY-01B	PA2G4	chr12	56498609	+	MARK1	chr1	220752696	+
Frame-shit	ENST00000258538	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
Frame-shit	ENST00000258538	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
Frame-shit	ENST00000258538	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
Frame-shit	ENST00000258538	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
Frame-shit	ENST00000258538	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
intron-3CDS	ENST00000549713	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
intron-3CDS	ENST00000549713	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
intron-3CDS	ENST00000549713	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
intron-3CDS	ENST00000549713	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
intron-3CDS	ENST00000549713	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A48N-01A	SLC41A2	chr12	105280071	-	DNM3	chr1	172100315	+
intron-intron	ENST00000550703	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000550703	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000550703	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000550703	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000551590	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000551590	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000551590	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000551590	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397655	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397655	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397655	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397655	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000471804	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000471804	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000471804	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000471804	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000377654	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000377654	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000377654	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000377654	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397659	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397659	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397659	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
5CDS-intron	ENST00000397659	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000551555	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000551555	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000551555	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
intron-intron	ENST00000551555	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23V-01A	TCTN1	chr12	111078954	+	CPM	chr12	69236109	-
In-frame	ENST00000283629	ENST00000328041		TCGA	RV	SARC	TCGA-VT-A80G-01A	UBP1	chr3	33450728	-	SLC24A3	chr20	19565615	+
In-frame	ENST00000447368	ENST00000328041		TCGA	RV	SARC	TCGA-VT-A80G-01A	UBP1	chr3	33450728	-	SLC24A3	chr20	19565615	+
In-frame	ENST00000283628	ENST00000328041		TCGA	RV	SARC	TCGA-VT-A80G-01A	UBP1	chr3	33450728	-	SLC24A3	chr20	19565615	+
intron-3CDS	ENST00000486388	ENST00000328041		TCGA	RV	SARC	TCGA-VT-A80G-01A	UBP1	chr3	33450728	-	SLC24A3	chr20	19565615	+
In-frame	ENST00000409039	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DNAH10	chr12	124323236	+	LIN7A	chr12	81239718	-
intron-3CDS	ENST00000538983	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	DNAH10	chr12	124323236	+	LIN7A	chr12	81239718	-
5CDS-intron	ENST00000220496	ENST00000559565		TCGA	RV	SARC	TCGA-FX-A3TO-01A	DNAJC17	chr15	41099567	-	TRIP4	chr15	64747196	+
5CDS-intron	ENST00000220496	ENST00000261884		TCGA	RV	SARC	TCGA-FX-A3TO-01A	DNAJC17	chr15	41099567	-	TRIP4	chr15	64747196	+
intron-intron	ENST00000558727	ENST00000559565		TCGA	RV	SARC	TCGA-FX-A3TO-01A	DNAJC17	chr15	41099567	-	TRIP4	chr15	64747196	+
intron-intron	ENST00000558727	ENST00000261884		TCGA	RV	SARC	TCGA-FX-A3TO-01A	DNAJC17	chr15	41099567	-	TRIP4	chr15	64747196	+
5CDS-5UTR	ENST00000358155	ENST00000483825		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000358155	ENST00000362089		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000358155	ENST00000392122		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000367733	ENST00000483825		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000367733	ENST00000362089		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000367733	ENST00000392122		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000355305	ENST00000483825		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000355305	ENST00000362089		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000355305	ENST00000392122		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000367731	ENST00000483825		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000367731	ENST00000362089		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000367731	ENST00000392122		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000520906	ENST00000483825		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000520906	ENST00000362089		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
5CDS-5UTR	ENST00000520906	ENST00000392122		TCGA	RV	SARC	TCGA-DX-A6BG-01A	DNM3	chr1	172100428	+	CD247	chr1	167410004	-
3UTR-3CDS	ENST00000455537	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000455537	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000455537	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000455537	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-intron	ENST00000455537	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-intron	ENST00000455537	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000286452	ENST00000536525		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000286452	ENST00000397909		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000286452	ENST00000228327		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-3CDS	ENST00000286452	ENST00000266692		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-intron	ENST00000286452	ENST00000552300		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
3UTR-intron	ENST00000286452	ENST00000541270		TCGA	RV	SARC	TCGA-DX-A7EI-01A	KIF5A	chr12	57976998	+	NAV3	chr12	78594253	+
In-frame	ENST00000335007	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000335007	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000335007	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000335007	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000335007	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000335007	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000335007	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000335007	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000335007	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
In-frame	ENST00000340766	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000340766	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000340766	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000340766	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000340766	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000340766	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000340766	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000340766	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000340766	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-3CDS	ENST00000546933	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-3UTR	ENST00000546933	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-3UTR	ENST00000546933	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-3UTR	ENST00000546933	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-3UTR	ENST00000546933	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-3UTR	ENST00000546933	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-intron	ENST00000546933	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-intron	ENST00000546933	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
intron-intron	ENST00000546933	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
In-frame	ENST00000550991	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000550991	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000550991	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000550991	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000550991	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000550991	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000550991	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000550991	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000550991	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
In-frame	ENST00000551676	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000551676	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000551676	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000551676	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000551676	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-3UTR	ENST00000551676	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000551676	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000551676	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5CDS-intron	ENST00000551676	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-3CDS	ENST00000551690	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-3UTR	ENST00000551690	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-3UTR	ENST00000551690	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-3UTR	ENST00000551690	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-3UTR	ENST00000551690	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-3UTR	ENST00000551690	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-intron	ENST00000551690	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-intron	ENST00000551690	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
5UTR-intron	ENST00000551690	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A23Y-01A	PPP1CC	chr12	111180458	-	KCNC2	chr12	75434986	-
In-frame	ENST00000344204	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
Frame-shit	ENST00000344204	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000344204	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000344204	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000344204	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
Frame-shit	ENST00000537187	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000537187	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-intron	ENST00000509967	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-intron	ENST00000515710	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-intron	ENST00000344135	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A7EF-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000262812	ENST00000214869		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000262812	ENST00000591695		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5CDS-5UTR	ENST00000262812	ENST00000588289		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000349893	ENST00000214869		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000349893	ENST00000591695		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5CDS-5UTR	ENST00000349893	ENST00000588289		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000600932	ENST00000214869		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000600932	ENST00000591695		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5CDS-5UTR	ENST00000600932	ENST00000588289		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5UTR-3CDS	ENST00000598969	ENST00000214869		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5UTR-3CDS	ENST00000598969	ENST00000591695		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5UTR-5UTR	ENST00000598969	ENST00000588289		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000351079	ENST00000214869		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
In-frame	ENST00000351079	ENST00000591695		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5CDS-5UTR	ENST00000351079	ENST00000588289		TCGA	RV	SARC	TCGA-DX-A8BL-01A	COPE	chr19	19023793	-	TMED1	chr19	10946029	-
5UTR-3CDS	ENST00000299293	ENST00000550746		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000299293	ENST00000319106		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000299293	ENST00000485960		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-5UTR	ENST00000299293	ENST00000393309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-intron	ENST00000299293	ENST00000548679		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000549921	ENST00000550746		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000549921	ENST00000319106		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000549921	ENST00000485960		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-5UTR	ENST00000549921	ENST00000393309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-intron	ENST00000549921	ENST00000548679		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000550389	ENST00000550746		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000550389	ENST00000319106		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000550389	ENST00000485960		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
intron-5UTR	ENST00000550389	ENST00000393309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
intron-intron	ENST00000550389	ENST00000548679		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000397997	ENST00000550746		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000397997	ENST00000319106		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-3CDS	ENST00000397997	ENST00000485960		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-5UTR	ENST00000397997	ENST00000393309		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
5UTR-intron	ENST00000397997	ENST00000548679		TCGA	RV	SARC	TCGA-3R-A8YX-01A	FRS2	chr12	69925836	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000377069	ENST00000393217		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000377069	ENST00000528777		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
intron-3CDS	ENST00000542973	ENST00000393217		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
intron-3UTR	ENST00000542973	ENST00000528777		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
In-frame	ENST00000377071	ENST00000393217		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000377071	ENST00000528777		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000536437	ENST00000393217		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000536437	ENST00000528777		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
In-frame	ENST00000538046	ENST00000393217		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000538046	ENST00000528777		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
intron-3CDS	ENST00000543852	ENST00000393217		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
intron-3UTR	ENST00000543852	ENST00000528777		TCGA	RV	SARC	TCGA-DX-A3LS-01A	KDM2B	chr12	122012452	-	LRRIQ1	chr12	85638567	+
5UTR-3CDS	ENST00000590898	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3CDS	ENST00000590898	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3CDS	ENST00000590898	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3UTR	ENST00000590898	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000399022	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000399022	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000399022	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5CDS-3UTR	ENST00000399022	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000337059	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000337059	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000337059	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3UTR	ENST00000337059	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000357384	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000357384	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000357384	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5CDS-3UTR	ENST00000357384	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3CDS	ENST00000588737	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3CDS	ENST00000588737	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3CDS	ENST00000588737	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5UTR-3UTR	ENST00000588737	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000319040	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000319040	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
In-frame	ENST00000319040	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5CDS-3UTR	ENST00000319040	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000588459	ENST00000471660		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000588459	ENST00000263780		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3CDS	ENST00000588459	ENST00000494980		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
intron-3UTR	ENST00000588459	ENST00000472024		TCGA	RV	SARC	TCGA-DX-AB2O-01A	RPRD1A	chr18	33647217	-	CHMP2B	chr3	87294864	+
5CDS-3UTR	ENST00000442123	ENST00000250498		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-5UTR	ENST00000442123	ENST00000489532		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-5UTR	ENST00000442123	ENST00000538631		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-3UTR	ENST00000442123	ENST00000543337		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-3UTR	ENST00000354586	ENST00000250498		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-5UTR	ENST00000354586	ENST00000489532		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-5UTR	ENST00000354586	ENST00000538631		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5CDS-3UTR	ENST00000354586	ENST00000543337		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
intron-3UTR	ENST00000556861	ENST00000250498		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
intron-5UTR	ENST00000556861	ENST00000489532		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
intron-5UTR	ENST00000556861	ENST00000538631		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
intron-3UTR	ENST00000556861	ENST00000543337		TCGA	RV	SARC	TCGA-DX-AB2O-01A	STYX	chr14	53226472	+	DAD1	chr14	23034037	-
5UTR-5UTR	ENST00000589160	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000589160	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000589160	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000589160	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000589160	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000589160	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000589160	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000337433	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000337433	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000337433	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000337433	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000337433	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000337433	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000337433	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000588883	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000588883	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000588883	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588883	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588883	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588883	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588883	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000413984	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000413984	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000413984	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000413984	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000413984	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000413984	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000413984	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000588742	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000588742	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000588742	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588742	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588742	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588742	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588742	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000300823	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000300823	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000300823	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000300823	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000300823	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000300823	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000300823	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000588795	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000588795	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000588795	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588795	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588795	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588795	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000588795	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000590089	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000590089	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000590089	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000590089	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000590089	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000590089	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000590089	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000454662	ENST00000593149		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-5UTR	ENST00000454662	ENST00000248342		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-3UTR	ENST00000454662	ENST00000593062		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000454662	ENST00000538434		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000454662	ENST00000588934		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000454662	ENST00000545173		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
5UTR-intron	ENST00000454662	ENST00000592558		TCGA	RV	SARC	TCGA-DX-A8BL-01A	ZNF226	chr19	44669960	+	EIF3K	chr19	39110977	+
Frame-shit	ENST00000368194	ENST00000368046		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
In-frame	ENST00000368194	ENST00000368045		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
intron-3CDS	ENST00000487682	ENST00000368046		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
intron-3CDS	ENST00000487682	ENST00000368045		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
Frame-shit	ENST00000361409	ENST00000368046		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
In-frame	ENST00000361409	ENST00000368045		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
intron-3CDS	ENST00000315174	ENST00000368046		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
intron-3CDS	ENST00000315174	ENST00000368045		TCGA	RV	SARC	TCGA-DX-A1L2-01A	ARHGEF11	chr1	157014091	-	CD48	chr1	160654979	-
Frame-shit	ENST00000397412	ENST00000253934		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000397412	ENST00000566264		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000436138	ENST00000253934		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000436138	ENST00000566264		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000293925	ENST00000253934		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000293925	ENST00000566264		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000262317	ENST00000253934		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
intron-3CDS	ENST00000262317	ENST00000566264		TCGA	RV	SARC	TCGA-DX-A3M2-01A	CRAMP1L	chr16	1676167	+	TMEM204	chr16	1604783	+
Frame-shit	ENST00000367843	ENST00000271588		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000367843	ENST00000367492		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000367843	ENST00000485744		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000432587	ENST00000271588		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000432587	ENST00000367492		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000432587	ENST00000485744		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000312263	ENST00000271588		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000312263	ENST00000367492		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000312263	ENST00000485744		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000367840	ENST00000271588		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000367840	ENST00000367492		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000367840	ENST00000485744		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
intron-3CDS	ENST00000470919	ENST00000271588		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
intron-3CDS	ENST00000470919	ENST00000367492		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
intron-intron	ENST00000470919	ENST00000485744		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DCAF6	chr1	168014465	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000357674	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000357674	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000357674	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000314062	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000314062	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000314062	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000346964	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000346964	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000346964	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000419354	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000419354	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000419354	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000452595	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000452595	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000452595	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000422288	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000422288	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000422288	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000448528	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000448528	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000448528	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000443183	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000443183	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-intron	ENST00000443183	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000450955	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000450955	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000450955	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000392382	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
Frame-shit	ENST00000392382	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5CDS-intron	ENST00000392382	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-3CDS	ENST00000485409	ENST00000342704		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-3CDS	ENST00000485409	ENST00000375279		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000344201		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000397798		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000346541		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000397800		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000492345		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000359606		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000491618		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
5UTR-intron	ENST00000485409	ENST00000543126		TCGA	RV	SARC	TCGA-DX-A8BS-01A	DLG1	chr3	197009550	-	CBFA2T2	chr20	32232153	+
intron-3CDS	ENST00000599564	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000599564	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
Frame-shit	ENST00000317991	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000317991	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-3CDS	ENST00000504615	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-intron	ENST00000504615	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
Frame-shit	ENST00000411896	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000411896	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
Frame-shit	ENST00000424536	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5CDS-intron	ENST00000424536	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-3CDS	ENST00000598073	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
intron-intron	ENST00000598073	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	GRAMD1A	chr19	35491390	+	RAB3IP	chr12	70193989	+
5UTR-3CDS	ENST00000403668	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000403668	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000403668	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000403668	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000444075	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000444075	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000444075	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000444075	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000287701	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000287701	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000287701	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000287701	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000558662	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000558662	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000558662	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000558662	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000523613	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000523613	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000523613	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000523613	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000397358	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000397358	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000397358	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000397358	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000519047	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000519047	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-3CDS	ENST00000519047	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
5UTR-intron	ENST00000519047	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000355231	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000355231	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000355231	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-intron	ENST00000355231	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000524238	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000524238	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000524238	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-intron	ENST00000524238	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000517386	ENST00000229854		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000517386	ENST00000596288		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-3CDS	ENST00000517386	ENST00000419835		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
intron-intron	ENST00000517386	ENST00000476448		TCGA	RV	SARC	TCGA-DX-A6YR-01A	HMBOX1	chr8	28748195	+	MCM3	chr6	52134024	-
Frame-shit	ENST00000283928	ENST00000496902		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000283928	ENST00000222761		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000283928	ENST00000535619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
5CDS-intron	ENST00000283928	ENST00000518886		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
intron-3CDS	ENST00000466516	ENST00000496902		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
intron-3CDS	ENST00000466516	ENST00000222761		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
intron-5UTR	ENST00000466516	ENST00000535619		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
intron-intron	ENST00000466516	ENST00000518886		TCGA	RV	SARC	TCGA-FX-A2QS-01A	JAZF1	chr7	28220082	-	EVX1	chr7	27284667	+
Frame-shit	ENST00000380087	ENST00000316149		TCGA	RV	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16888161	-	NDUFAF4	chr6	97344723	-
5CDS-5UTR	ENST00000380087	ENST00000489477		TCGA	RV	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16888161	-	NDUFAF4	chr6	97344723	-
intron-3CDS	ENST00000380084	ENST00000316149		TCGA	RV	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16888161	-	NDUFAF4	chr6	97344723	-
intron-5UTR	ENST00000380084	ENST00000489477		TCGA	RV	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16888161	-	NDUFAF4	chr6	97344723	-
Frame-shit	ENST00000404022	ENST00000316149		TCGA	RV	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16888161	-	NDUFAF4	chr6	97344723	-
5CDS-5UTR	ENST00000404022	ENST00000489477		TCGA	RV	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16888161	-	NDUFAF4	chr6	97344723	-
5UTR-3CDS	ENST00000227495	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
5UTR-3CDS	ENST00000444328	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
5UTR-3CDS	ENST00000356132	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000530591	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000534083	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000392669	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000526756	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000526727	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000449406	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000532243	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
intron-3CDS	ENST00000534457	ENST00000200135		TCGA	RV	SARC	TCGA-3B-A9HL-01A	ST3GAL4	chr11	126225737	+	ZW10	chr11	113619142	-
Frame-shit	ENST00000526343	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000526343	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000526343	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000526343	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000282441	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000282441	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000282441	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000282441	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000537274	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000537274	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000537274	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000537274	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000345877	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000345877	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000345877	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000345877	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000531439	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000531439	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000531439	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000531439	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000524575	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000524575	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
Frame-shit	ENST00000524575	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
5CDS-intron	ENST00000524575	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
intron-3CDS	ENST00000528834	ENST00000522208		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
intron-3CDS	ENST00000528834	ENST00000521389		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
intron-3CDS	ENST00000528834	ENST00000261947		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
intron-intron	ENST00000528834	ENST00000520564		TCGA	RV	SARC	TCGA-DX-A23T-01A	YAP1	chr11	101985125	+	RNF130	chr5	179467647	-
intron-intron	ENST00000334801	ENST00000453654		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
intron-intron	ENST00000334801	ENST00000288490		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
intron-intron	ENST00000334801	ENST00000424189		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
intron-intron	ENST00000334801	ENST00000446122		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
intron-intron	ENST00000334801	ENST00000494390		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
5UTR-intron	ENST00000526143	ENST00000453654		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
5UTR-intron	ENST00000526143	ENST00000288490		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
5UTR-intron	ENST00000526143	ENST00000424189		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
5UTR-intron	ENST00000526143	ENST00000446122		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
5UTR-intron	ENST00000526143	ENST00000494390		TCGA	RV	SARC	TCGA-DX-A1KX-01A	BCL9L	chr11	118795947	-	DGKI	chr7	137374748	-
intron-intron	ENST00000548249	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
intron-intron	ENST00000548249	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000537439	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000537439	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000434715	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000434715	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000543672	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000543672	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
intron-intron	ENST00000551400	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
intron-intron	ENST00000551400	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57924094	-	EEA1	chr12	93229203	-
5UTR-5UTR	ENST00000369983	ENST00000526713		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000369983	ENST00000344327		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000369983	ENST00000532133		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000369983	ENST00000360497		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
5UTR-5UTR	ENST00000369983	ENST00000348423		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000476019	ENST00000526713		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000476019	ENST00000344327		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000476019	ENST00000532133		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000476019	ENST00000360497		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000476019	ENST00000348423		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000348943	ENST00000378707		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000348943	ENST00000359836		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000348943	ENST00000541735		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000348943	ENST00000343523		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000348943	ENST00000378677		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000348943	ENST00000357033		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000348943	ENST00000474231		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000348943	ENST00000378723		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000348943	ENST00000378702		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000348943	ENST00000361471		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000348943	ENST00000378680		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000348943	ENST00000288447		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000348943	ENST00000445312		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000378707		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000359836		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000541735		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000343523		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000378677		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000357033		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-5UTR	ENST00000325495	ENST00000474231		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000325495	ENST00000378723		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000325495	ENST00000378702		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000325495	ENST00000361471		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000325495	ENST00000378680		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000325495	ENST00000288447		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
5CDS-intron	ENST00000325495	ENST00000445312		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000378707		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000359836		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000541735		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000343523		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000378677		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000357033		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-5UTR	ENST00000602219	ENST00000474231		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-intron	ENST00000602219	ENST00000378723		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-intron	ENST00000602219	ENST00000378702		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-intron	ENST00000602219	ENST00000361471		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-intron	ENST00000602219	ENST00000378680		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-intron	ENST00000602219	ENST00000288447		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
intron-intron	ENST00000602219	ENST00000445312		TCGA	RV	SARC	TCGA-SI-A71Q-01A	HNRNPM	chr19	8530399	+	DMD	chrX	31986631	-
In-frame	ENST00000354179	ENST00000378004		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000354179	ENST00000274498		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
5CDS-intron	ENST00000354179	ENST00000486650		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000439151	ENST00000378004		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000439151	ENST00000274498		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
5CDS-intron	ENST00000439151	ENST00000486650		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000347982	ENST00000378004		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000347982	ENST00000274498		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
5CDS-intron	ENST00000347982	ENST00000486650		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000361032	ENST00000378004		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
In-frame	ENST00000361032	ENST00000274498		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
5CDS-intron	ENST00000361032	ENST00000486650		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
intron-3CDS	ENST00000511258	ENST00000378004		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
intron-3CDS	ENST00000511258	ENST00000274498		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
intron-intron	ENST00000511258	ENST00000486650		TCGA	RV	SARC	TCGA-3B-A9HR-01A	NSD1	chr5	176639196	+	ARHGAP26	chr5	142287269	+
5UTR-5UTR	ENST00000424085	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000424085	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000424085	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000424085	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-5UTR	ENST00000257075	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000257075	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000257075	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000257075	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-5UTR	ENST00000373747	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000373747	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000373747	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000373747	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-5UTR	ENST00000426105	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000426105	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000426105	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000426105	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-5UTR	ENST00000440538	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000440538	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000440538	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000440538	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-5UTR	ENST00000373741	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000373741	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000373741	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000373741	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-5UTR	ENST00000423018	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000423018	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000423018	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
5UTR-intron	ENST00000423018	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-5UTR	ENST00000373742	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000373742	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000373742	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000373742	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-5UTR	ENST00000490546	ENST00000316981		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000490546	ENST00000423799		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000490546	ENST00000429357		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
intron-intron	ENST00000490546	ENST00000519027		TCGA	RV	SARC	TCGA-PT-A8TR-01A	PUM1	chr1	31538463	-	PLAG1	chr8	57092072	-
Frame-shit	ENST00000379565	ENST00000377967		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
Frame-shit	ENST00000379565	ENST00000382899		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
Frame-shit	ENST00000379565	ENST00000536777		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
Frame-shit	ENST00000379565	ENST00000543216		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
5CDS-3UTR	ENST00000379565	ENST00000479423		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000544447	ENST00000377967		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000544447	ENST00000382899		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000544447	ENST00000536777		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000544447	ENST00000543216		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3UTR	ENST00000544447	ENST00000479423		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000379548	ENST00000377967		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000379548	ENST00000382899		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000379548	ENST00000536777		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000379548	ENST00000543216		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3UTR	ENST00000379548	ENST00000479423		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000540702	ENST00000377967		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000540702	ENST00000382899		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000540702	ENST00000536777		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000540702	ENST00000543216		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3UTR	ENST00000540702	ENST00000479423		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000479809	ENST00000377967		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000479809	ENST00000382899		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000479809	ENST00000536777		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3CDS	ENST00000479809	ENST00000543216		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
intron-3UTR	ENST00000479809	ENST00000479423		TCGA	RV	SARC	TCGA-DX-A3UC-01A	RPS6KA3	chrX	20284682	-	KDM6A	chrX	44966655	+
In-frame	ENST00000355528	ENST00000336648		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
In-frame	ENST00000355528	ENST00000399120		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
5CDS-intron	ENST00000355528	ENST00000482273		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
intron-3CDS	ENST00000397466	ENST00000336648		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
intron-3CDS	ENST00000397466	ENST00000399120		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
intron-intron	ENST00000397466	ENST00000482273		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
In-frame	ENST00000539345	ENST00000336648		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
In-frame	ENST00000539345	ENST00000399120		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
5CDS-intron	ENST00000539345	ENST00000482273		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
intron-3CDS	ENST00000576691	ENST00000336648		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
intron-3CDS	ENST00000576691	ENST00000399120		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
intron-intron	ENST00000576691	ENST00000482273		TCGA	RV	SARC	TCGA-HB-A43Z-01A	TBCD	chr17	80888519	+	HLCS	chr21	38139586	-
Frame-shit	ENST00000343028	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
Frame-shit	ENST00000343028	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000343028	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000550433		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000548513		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000549446		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000298972		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000341669		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000350228		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000540018		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000542667	ENST00000393288		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
intron-intron	ENST00000542667	ENST00000548243		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	TM7SF3	chr12	27143383	-	KCNC2	chr12	75445097	-
In-frame	ENST00000393376	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000393376	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000393376	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000393376	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000393376	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
5UTR-3CDS	ENST00000473553	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
5UTR-3CDS	ENST00000473553	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
5UTR-3CDS	ENST00000473553	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
5UTR-3CDS	ENST00000473553	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
5UTR-3CDS	ENST00000473553	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000417368	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000417368	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000417368	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000417368	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
In-frame	ENST00000417368	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A6BH-01A	AASS	chr7	121731757	-	DNM3	chr1	172100315	+
Frame-shit	ENST00000535787	ENST00000392246		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
In-frame	ENST00000535787	ENST00000392245		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000535787	ENST00000409368		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000535787	ENST00000392244		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000535787	ENST00000409712		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000535787	ENST00000409181		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000535787	ENST00000409498		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000535787	ENST00000409205		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-5UTR	ENST00000535787	ENST00000469034		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000241416	ENST00000392246		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
In-frame	ENST00000241416	ENST00000392245		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000241416	ENST00000409368		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000241416	ENST00000392244		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000241416	ENST00000409712		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000241416	ENST00000409181		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000241416	ENST00000409498		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000241416	ENST00000409205		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-5UTR	ENST00000241416	ENST00000469034		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000404590	ENST00000392246		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
In-frame	ENST00000404590	ENST00000392245		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000404590	ENST00000409368		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000404590	ENST00000392244		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
Frame-shit	ENST00000404590	ENST00000409712		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000404590	ENST00000409181		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000404590	ENST00000409498		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-3UTR	ENST00000404590	ENST00000409205		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5CDS-5UTR	ENST00000404590	ENST00000469034		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3CDS	ENST00000495775	ENST00000392246		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3CDS	ENST00000495775	ENST00000392245		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3CDS	ENST00000495775	ENST00000409368		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3CDS	ENST00000495775	ENST00000392244		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3CDS	ENST00000495775	ENST00000409712		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3UTR	ENST00000495775	ENST00000409181		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3UTR	ENST00000495775	ENST00000409498		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-3UTR	ENST00000495775	ENST00000409205		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
intron-5UTR	ENST00000495775	ENST00000469034		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ACVR2A	chr2	148680680	+	SUMO1	chr2	203072044	-
5UTR-3CDS	ENST00000346329	ENST00000253925		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-3CDS	ENST00000346329	ENST00000389547		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-intron	ENST00000346329	ENST00000530548		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-3CDS	ENST00000301843	ENST00000253925		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-3CDS	ENST00000301843	ENST00000389547		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-intron	ENST00000301843	ENST00000530548		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
3UTR-3CDS	ENST00000527622	ENST00000253925		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
3UTR-3CDS	ENST00000527622	ENST00000389547		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
3UTR-intron	ENST00000527622	ENST00000530548		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-3CDS	ENST00000376561	ENST00000253925		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-3CDS	ENST00000376561	ENST00000389547		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-intron	ENST00000376561	ENST00000530548		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
intron-3CDS	ENST00000538675	ENST00000253925		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
intron-3CDS	ENST00000538675	ENST00000389547		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
intron-intron	ENST00000538675	ENST00000530548		TCGA	RV	SARC	TCGA-DX-AB2Q-01A	CTTN	chr11	70244720	+	PPFIA1	chr11	70189775	+
5UTR-3CDS	ENST00000299293	ENST00000403681		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000299293	ENST00000541363		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000299293	ENST00000393577		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000299293	ENST00000393578		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000299293	ENST00000425208		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000299293	ENST00000536545		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000299293	ENST00000354636		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000403681		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000541363		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000393577		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000393578		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000425208		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000536545		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000549921	ENST00000354636		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000403681		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000541363		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000393577		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000393578		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000425208		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000536545		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5UTR-3CDS	ENST00000550389	ENST00000354636		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000403681		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000541363		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000393577		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000393578		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000425208		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000536545		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
intron-3CDS	ENST00000397997	ENST00000354636		TCGA	RV	SARC	TCGA-DX-A3M1-01A	FRS2	chr12	69864310	+	HMGA2	chr12	66232299	+
5CDS-intron	ENST00000403668	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000403668	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000403668	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000403668	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000403668	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000444075	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000444075	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000444075	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000444075	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000444075	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000287701	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000287701	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000287701	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000287701	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000287701	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000558662	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000558662	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000558662	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000558662	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000558662	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523613	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523613	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523613	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523613	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000523613	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000397358	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000397358	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000397358	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000397358	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000397358	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000519047	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000519047	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000519047	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000519047	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000519047	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000355231	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000355231	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000355231	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000355231	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000355231	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000524238	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000524238	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000524238	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000524238	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5CDS-intron	ENST00000524238	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000517386	ENST00000380629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000517386	ENST00000523515		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000517386	ENST00000520409		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000517386	ENST00000518611		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
intron-intron	ENST00000517386	ENST00000521254		TCGA	RV	SARC	TCGA-DX-A1L0-01A	HMBOX1	chr8	28876430	+	BNIP3L	chr8	26362823	+
5UTR-3CDS	ENST00000261182	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261182	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261182	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261182	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261182	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000261182	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000393263	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393263	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393263	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393263	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393263	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000393263	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000431879	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000431879	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000431879	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000431879	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000431879	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000431879	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000547773	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000547773	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000547773	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000547773	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000547773	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000547773	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000544816	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000544816	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000544816	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000544816	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000544816	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000544816	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000542344	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000542344	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000542344	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000542344	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000542344	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000542344	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000535020	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000535020	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000535020	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000535020	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000535020	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000535020	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000549596	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000549596	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000549596	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000549596	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000549596	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000549596	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000547993	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000547993	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000547993	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000547993	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000547993	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000547993	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000552342	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552342	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552342	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552342	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552342	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000552342	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000548044	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000548044	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000548044	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000548044	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000548044	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000548044	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A3LT-01A	NAP1L1	chr12	76478347	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000258538	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SLC41A2	chr12	105351866	-	LIN7A	chr12	81242101	-
intron-3CDS	ENST00000549713	ENST00000552864		TCGA	RV	SARC	TCGA-3B-A9HO-01A	SLC41A2	chr12	105351866	-	LIN7A	chr12	81242101	-
Frame-shit	ENST00000541110	ENST00000371460		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000541110	ENST00000371459		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000541110	ENST00000371461		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000541110	ENST00000306867		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000541110	ENST00000371458		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000541110	ENST00000459689		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372917	ENST00000371460		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372917	ENST00000371459		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372917	ENST00000371461		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372917	ENST00000306867		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000372917	ENST00000371458		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000372917	ENST00000459689		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372922	ENST00000371460		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372922	ENST00000371459		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372922	ENST00000371461		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000372922	ENST00000306867		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000372922	ENST00000371458		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000372922	ENST00000459689		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000340840	ENST00000371460		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000340840	ENST00000371459		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000340840	ENST00000371461		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000340840	ENST00000306867		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000340840	ENST00000371458		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000340840	ENST00000459689		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000354325	ENST00000371460		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000354325	ENST00000371459		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000354325	ENST00000371461		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
In-frame	ENST00000354325	ENST00000306867		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000354325	ENST00000371458		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000354325	ENST00000459689		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	TRERF1	chr6	42210986	-	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000359019	ENST00000373083		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000359019	ENST00000373089		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000359019	ENST00000373086		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000334822	ENST00000373083		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000334822	ENST00000373089		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000334822	ENST00000373086		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000426126	ENST00000373083		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000426126	ENST00000373089		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
Frame-shit	ENST00000426126	ENST00000373086		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
intron-3CDS	ENST00000550789	ENST00000373083		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
intron-3CDS	ENST00000550789	ENST00000373089		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
intron-3CDS	ENST00000550789	ENST00000373086		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303825	+
5UTR-3CDS	ENST00000261168	ENST00000306858		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14518761	+	FAM83B	chr6	54804504	+
5UTR-3CDS	ENST00000543189	ENST00000306858		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14518761	+	FAM83B	chr6	54804504	+
5UTR-3CDS	ENST00000536444	ENST00000306858		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14518761	+	FAM83B	chr6	54804504	+
intron-3CDS	ENST00000544627	ENST00000306858		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14518761	+	FAM83B	chr6	54804504	+
intron-3CDS	ENST00000541654	ENST00000306858		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14518761	+	FAM83B	chr6	54804504	+
intron-3CDS	ENST00000540793	ENST00000306858		TCGA	RV	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14518761	+	FAM83B	chr6	54804504	+
Frame-shit	ENST00000228740	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
Frame-shit	ENST00000228740	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
Frame-shit	ENST00000228740	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
5CDS-intron	ENST00000228740	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
5CDS-intron	ENST00000228740	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
Frame-shit	ENST00000552789	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
Frame-shit	ENST00000552789	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
Frame-shit	ENST00000552789	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
5CDS-intron	ENST00000552789	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
5CDS-intron	ENST00000552789	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
3UTR-3CDS	ENST00000413268	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
3UTR-3CDS	ENST00000413268	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
3UTR-3CDS	ENST00000413268	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
3UTR-intron	ENST00000413268	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
3UTR-intron	ENST00000413268	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
intron-3CDS	ENST00000548375	ENST00000280758		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
intron-3CDS	ENST00000548375	ENST00000420571		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
intron-3CDS	ENST00000548375	ENST00000490090		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
intron-intron	ENST00000548375	ENST00000357167		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
intron-intron	ENST00000548375	ENST00000494235		TCGA	RV	SARC	TCGA-DX-A3U5-01A	LTA4H	chr12	96396738	-	BTBD11	chr12	107914264	+
5CDS-intron	ENST00000360416	ENST00000462175		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000360416	ENST00000395930		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000360416	ENST00000338696		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000379980	ENST00000462175		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000379980	ENST00000395930		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000379980	ENST00000338696		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000396239	ENST00000462175		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000396239	ENST00000395930		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000396239	ENST00000338696		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000269243	ENST00000462175		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000269243	ENST00000395930		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5CDS-intron	ENST00000269243	ENST00000338696		TCGA	RV	SARC	TCGA-HB-A2OT-01A	MYH10	chr17	8492399	-	TEKT3	chr17	15217547	-
5UTR-3CDS	ENST00000404460	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000404460	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000404460	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000404460	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-3CDS	ENST00000303908	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-3CDS	ENST00000303908	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-5UTR	ENST00000303908	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-intron	ENST00000303908	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000409158	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000409158	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000409158	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000409158	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000403716	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000403716	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000403716	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000403716	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000234115	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000234115	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000234115	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000234115	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000439822	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000439822	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000439822	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000439822	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
3UTR-3CDS	ENST00000487980	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
3UTR-3CDS	ENST00000487980	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
3UTR-5UTR	ENST00000487980	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
3UTR-intron	ENST00000487980	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000438882	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000438882	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000438882	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000438882	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000538982	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-3CDS	ENST00000538982	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-5UTR	ENST00000538982	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
5UTR-intron	ENST00000538982	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-3CDS	ENST00000409612	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-3CDS	ENST00000409612	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-5UTR	ENST00000409612	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-intron	ENST00000409612	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-3CDS	ENST00000409279	ENST00000454853		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-3CDS	ENST00000409279	ENST00000435811		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-5UTR	ENST00000409279	ENST00000369451		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
intron-intron	ENST00000409279	ENST00000481493		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	PLEKHB2	chr2	131862971	+	GABRR1	chr6	89910984	-
Frame-shit	ENST00000436639	ENST00000324871		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
In-frame	ENST00000436639	ENST00000257848		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
5CDS-5UTR	ENST00000436639	ENST00000548681		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
In-frame	ENST00000302071	ENST00000324871		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
Frame-shit	ENST00000302071	ENST00000257848		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
5CDS-5UTR	ENST00000302071	ENST00000548681		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
Frame-shit	ENST00000356644	ENST00000324871		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
In-frame	ENST00000356644	ENST00000257848		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
5CDS-5UTR	ENST00000356644	ENST00000548681		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
intron-3CDS	ENST00000517548	ENST00000324871		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
intron-3CDS	ENST00000517548	ENST00000257848		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
intron-5UTR	ENST00000517548	ENST00000548681		TCGA	RV	SARC	TCGA-FX-A3NK-01A	SESN1	chr6	109313990	-	METTL1	chr12	58165040	-
In-frame	ENST00000320610	ENST00000369046		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000320610	ENST00000467262		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000320610	ENST00000369044		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
In-frame	ENST00000253159	ENST00000369046		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000253159	ENST00000467262		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
5CDS-3UTR	ENST00000253159	ENST00000369044		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
3UTR-3CDS	ENST00000583095	ENST00000369046		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
3UTR-3UTR	ENST00000583095	ENST00000467262		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
3UTR-3UTR	ENST00000583095	ENST00000369044		TCGA	RV	SARC	TCGA-K1-A42X-01A	ZNF236	chr18	74563895	+	QRSL1	chr6	107088224	+
intron-3CDS	ENST00000498485	ENST00000487099		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-intron	ENST00000498485	ENST00000373584		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-intron	ENST00000498485	ENST00000416460		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-intron	ENST00000498485	ENST00000344523		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
In-frame	ENST00000259457	ENST00000487099		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000259457	ENST00000373584		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000259457	ENST00000416460		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000259457	ENST00000344523		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-3CDS	ENST00000536392	ENST00000487099		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-intron	ENST00000536392	ENST00000373584		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-intron	ENST00000536392	ENST00000416460		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
intron-intron	ENST00000536392	ENST00000344523		TCGA	RV	SARC	TCGA-DX-A7ES-01A	PSMB7	chr9	127167596	-	NR6A1	chr9	127316849	-
Frame-shit	ENST00000370010	ENST00000257787		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
5CDS-intron	ENST00000370010	ENST00000420494		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
Frame-shit	ENST00000370014	ENST00000257787		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
5CDS-intron	ENST00000370014	ENST00000420494		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
Frame-shit	ENST00000447266	ENST00000257787		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
5CDS-intron	ENST00000447266	ENST00000420494		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
Frame-shit	ENST00000541192	ENST00000257787		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
5CDS-intron	ENST00000541192	ENST00000420494		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
Frame-shit	ENST00000327284	ENST00000257787		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
5CDS-intron	ENST00000327284	ENST00000420494		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
intron-3CDS	ENST00000436928	ENST00000257787		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
intron-intron	ENST00000436928	ENST00000420494		TCGA	RV	SARC	TCGA-WK-A8XO-01A	SENP6	chr6	76388643	+	AKIRIN2	chr6	88385325	-
5CDS-3UTR	ENST00000510377	ENST00000589109		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-3UTR	ENST00000510377	ENST00000326695		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-3UTR	ENST00000510377	ENST00000590910		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-intron	ENST00000510377	ENST00000282028		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-3UTR	ENST00000307017	ENST00000589109		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-3UTR	ENST00000307017	ENST00000326695		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-3UTR	ENST00000307017	ENST00000590910		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
5CDS-intron	ENST00000307017	ENST00000282028		TCGA	RV	SARC	TCGA-DX-A6YR-01A	USP38	chr4	144109114	+	RIT2	chr18	40323685	-
Frame-shit	ENST00000372067	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372067	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000372067	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372067	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372067	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000417285	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000417285	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000417285	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000417285	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000417285	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000324450	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000324450	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000324450	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000324450	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000324450	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000413642	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000413642	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000413642	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000413642	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000413642	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372055	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372055	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000372055	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372055	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372055	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000482630	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000482630	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000482630	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000482630	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000482630	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000425836	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000425836	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000425836	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000425836	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000425836	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372064	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372064	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000372064	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372064	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372064	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372077	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000372077	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000372077	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372077	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000372077	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000520948	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000520948	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000520948	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000520948	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000520948	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000523873	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000523873	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000523873	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000523873	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000523873	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000523950	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000523950	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000523950	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000523950	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000523950	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000518689	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000518689	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000518689	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000518689	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000518689	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000523125	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000523125	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000523125	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000523125	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000523125	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000457104	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000457104	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000457104	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000457104	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000457104	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000518824	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
Frame-shit	ENST00000518824	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-intron	ENST00000518824	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000518824	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000518824	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
intron-3CDS	ENST00000230480	ENST00000354831		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
intron-3CDS	ENST00000230480	ENST00000352171		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
intron-intron	ENST00000230480	ENST00000485608		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
intron-5UTR	ENST00000230480	ENST00000539524		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
intron-5UTR	ENST00000230480	ENST00000544028		TCGA	RV	SARC	TCGA-IE-A6BZ-01A	VEGFA	chr6	43739049	+	NRD1	chr1	52306186	-
In-frame	ENST00000274458	ENST00000229179		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
In-frame	ENST00000274458	ENST00000378905		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
In-frame	ENST00000274458	ENST00000539906		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000274458	ENST00000401003		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
In-frame	ENST00000515539	ENST00000229179		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
In-frame	ENST00000515539	ENST00000378905		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
In-frame	ENST00000515539	ENST00000539906		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
5CDS-intron	ENST00000515539	ENST00000401003		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000503424	ENST00000229179		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000503424	ENST00000378905		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
intron-3CDS	ENST00000503424	ENST00000539906		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
intron-intron	ENST00000503424	ENST00000401003		TCGA	RV	SARC	TCGA-DX-AB3A-01A	COMMD10	chr5	115428397	+	NUP107	chr12	69135593	+
In-frame	ENST00000308330	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
In-frame	ENST00000308330	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000308330	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000550433		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000548513		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000549446		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000298972		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000341669		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000350228		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000540018		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000541171	ENST00000393288		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000541171	ENST00000548243		TCGA	RV	SARC	TCGA-DX-AB2F-01A	LEMD3	chr12	65612399	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000382496	ENST00000304460		TCGA	RV	SARC	TCGA-FX-A2QS-01A	SEMA5A	chr5	9066533	-	SLC6A19	chr5	1208861	+
Frame-shit	ENST00000237289	ENST00000229134		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TNFAIP3	chr6	138192659	+	IL26	chr12	68595863	-
intron-3CDS	ENST00000485192	ENST00000229134		TCGA	RV	SARC	TCGA-DX-A6BH-01A	TNFAIP3	chr6	138192659	+	IL26	chr12	68595863	-
Frame-shit	ENST00000279907	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2F-01A	UHRF1BP1L	chr12	100536370	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000279907	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2F-01A	UHRF1BP1L	chr12	100536370	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000356828	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2F-01A	UHRF1BP1L	chr12	100536370	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000356828	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2F-01A	UHRF1BP1L	chr12	100536370	-	TRHDE	chr12	72680461	+
intron-3CDS	ENST00000545232	ENST00000261180		TCGA	RV	SARC	TCGA-DX-AB2F-01A	UHRF1BP1L	chr12	100536370	-	TRHDE	chr12	72680461	+
intron-intron	ENST00000545232	ENST00000549138		TCGA	RV	SARC	TCGA-DX-AB2F-01A	UHRF1BP1L	chr12	100536370	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000301178	ENST00000376929		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000301178	ENST00000506690		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000301178	ENST00000389805		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000301178	ENST00000402874		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000301178	ENST00000510187		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000301178	ENST00000360718		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000359092	ENST00000376929		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000359092	ENST00000506690		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000359092	ENST00000389805		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000359092	ENST00000402874		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000359092	ENST00000510187		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000359092	ENST00000360718		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000594880	ENST00000376929		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000594880	ENST00000506690		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000594880	ENST00000389805		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000594880	ENST00000402874		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000594880	ENST00000510187		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000594880	ENST00000360718		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000593513	ENST00000376929		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000593513	ENST00000506690		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000593513	ENST00000389805		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000593513	ENST00000402874		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000593513	ENST00000510187		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000593513	ENST00000360718		TCGA	RV	SARC	TCGA-DX-A6YQ-01A	AXL	chr19	41767670	+	SQSTM1	chr5	179250858	+
5UTR-3CDS	ENST00000393249	ENST00000543096		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000393249	ENST00000543111		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000393249	ENST00000327337		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000261183	ENST00000543096		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000261183	ENST00000543111		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000261183	ENST00000327337		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000393250	ENST00000543096		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000393250	ENST00000543111		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000393250	ENST00000327337		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000552178	ENST00000543096		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000552178	ENST00000543111		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5UTR-3CDS	ENST00000552178	ENST00000327337		TCGA	RV	SARC	TCGA-DX-A1L4-01A	OSBPL8	chr12	76953177	-	FAM186A	chr12	50727886	-
5CDS-intron	ENST00000324093	ENST00000356918		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000510769		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000429253		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000510688		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000511262		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000383366		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000412440		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000507910		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000508196		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000324093	ENST00000426022		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000356918		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000510769		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000429253		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000510688		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000511262		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000383366		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000412440		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000507910		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000508196		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
5CDS-intron	ENST00000393239	ENST00000426022		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000356918		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000510769		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000429253		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000510688		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000511262		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000383366		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000412440		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000507910		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000508196		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
intron-intron	ENST00000504689	ENST00000426022		TCGA	RV	SARC	TCGA-DX-AB37-01A	PLXND1	chr3	129304795	-	NEK11	chr3	131068401	+
Frame-shit	ENST00000202556	ENST00000408946		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
Frame-shit	ENST00000202556	ENST00000398213		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000202556	ENST00000302533		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000202556	ENST00000557259		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000202556	ENST00000547925		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
5CDS-intron	ENST00000202556	ENST00000454792		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-3CDS	ENST00000423488	ENST00000408946		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-3CDS	ENST00000423488	ENST00000398213		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-5UTR	ENST00000423488	ENST00000302533		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-5UTR	ENST00000423488	ENST00000557259		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-5UTR	ENST00000423488	ENST00000547925		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-intron	ENST00000423488	ENST00000454792		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-3CDS	ENST00000555391	ENST00000408946		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-3CDS	ENST00000555391	ENST00000398213		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-5UTR	ENST00000555391	ENST00000302533		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-5UTR	ENST00000555391	ENST00000557259		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-5UTR	ENST00000555391	ENST00000547925		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
intron-intron	ENST00000555391	ENST00000454792		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PPP1R13B	chr14	104313636	-	WIBG	chr12	56297264	-
5CDS-5UTR	ENST00000539605	ENST00000333055		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000539605	ENST00000307826		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000539605	ENST00000446023		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000539605	ENST00000393340		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000539605	ENST00000427865		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-intron	ENST00000539605	ENST00000506708		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000357997	ENST00000333055		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000357997	ENST00000307826		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000357997	ENST00000446023		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000357997	ENST00000393340		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000357997	ENST00000427865		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-intron	ENST00000357997	ENST00000506708		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542282	ENST00000333055		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542282	ENST00000307826		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542282	ENST00000446023		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542282	ENST00000393340		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542282	ENST00000427865		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-intron	ENST00000542282	ENST00000506708		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542657	ENST00000333055		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542657	ENST00000307826		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542657	ENST00000446023		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542657	ENST00000393340		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542657	ENST00000427865		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-intron	ENST00000542657	ENST00000506708		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542374	ENST00000333055		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542374	ENST00000307826		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542374	ENST00000446023		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542374	ENST00000393340		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-5UTR	ENST00000542374	ENST00000427865		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
intron-intron	ENST00000542374	ENST00000506708		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000337516	ENST00000333055		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000337516	ENST00000307826		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000337516	ENST00000446023		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000337516	ENST00000393340		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-5UTR	ENST00000337516	ENST00000427865		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
5CDS-intron	ENST00000337516	ENST00000506708		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ANKLE2	chr12	133324418	-	MGAT1	chr5	180220097	-
In-frame	ENST00000393043	ENST00000389840		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
In-frame	ENST00000393043	ENST00000585328		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
5CDS-intron	ENST00000393043	ENST00000586052		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
In-frame	ENST00000269122	ENST00000389840		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
In-frame	ENST00000269122	ENST00000585328		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
5CDS-intron	ENST00000269122	ENST00000586052		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
In-frame	ENST00000579456	ENST00000389840		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
In-frame	ENST00000579456	ENST00000585328		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
5CDS-intron	ENST00000579456	ENST00000586052		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
intron-3CDS	ENST00000579815	ENST00000389840		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
intron-3CDS	ENST00000579815	ENST00000585328		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
intron-intron	ENST00000579815	ENST00000586052		TCGA	RV	SARC	TCGA-X6-A8C2-01A	CLTC	chr17	57697534	+	DNAH17	chr17	76511104	-
Frame-shit	ENST00000546373	ENST00000299300		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
Frame-shit	ENST00000546373	ENST00000544368		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
Frame-shit	ENST00000546373	ENST00000543146		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
Frame-shit	ENST00000551568	ENST00000299300		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
Frame-shit	ENST00000551568	ENST00000544368		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
Frame-shit	ENST00000551568	ENST00000543146		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
In-frame	ENST00000338356	ENST00000299300		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
In-frame	ENST00000338356	ENST00000544368		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
In-frame	ENST00000338356	ENST00000543146		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
intron-3CDS	ENST00000549691	ENST00000299300		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
intron-3CDS	ENST00000549691	ENST00000544368		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
intron-3CDS	ENST00000549691	ENST00000543146		TCGA	RV	SARC	TCGA-DX-A1KU-01A	CPM	chr12	69279572	-	CCT2	chr12	69986756	+
5CDS-3UTR	ENST00000327443	ENST00000548446		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000420353		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000415113		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000456903		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000548118		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000591397		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000328463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000327443	ENST00000546661		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-3UTR	ENST00000426431	ENST00000548446		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000420353		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000415113		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000456903		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000548118		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000591397		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000328463		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
5CDS-intron	ENST00000426431	ENST00000546661		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	ATF7	chr12	53901811	-
Frame-shit	ENST00000321765	ENST00000247020		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SPAG5	chr17	26918716	-	SDF2	chr17	26976294	-
5CDS-5UTR	ENST00000321765	ENST00000592250		TCGA	RV	SARC	TCGA-FX-A3TO-01A	SPAG5	chr17	26918716	-	SDF2	chr17	26976294	-
In-frame	ENST00000230895	ENST00000382496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DAP	chr5	10761126	-	SEMA5A	chr5	9066758	-
In-frame	ENST00000432074	ENST00000382496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DAP	chr5	10761126	-	SEMA5A	chr5	9066758	-
5UTR-3CDS	ENST00000510546	ENST00000382496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	DAP	chr5	10761126	-	SEMA5A	chr5	9066758	-
5UTR-3CDS	ENST00000299293	ENST00000550916		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000299293	ENST00000378689		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000299293	ENST00000435775		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000299293	ENST00000378692		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000299293	ENST00000320460		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000299293	ENST00000547164		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000299293	ENST00000441218		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-3CDS	ENST00000549921	ENST00000550916		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000549921	ENST00000378689		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000549921	ENST00000435775		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000549921	ENST00000378692		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000549921	ENST00000320460		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000549921	ENST00000547164		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000549921	ENST00000441218		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-3CDS	ENST00000550389	ENST00000550916		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000550389	ENST00000378689		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000550389	ENST00000435775		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000550389	ENST00000378692		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000550389	ENST00000320460		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000550389	ENST00000547164		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
5UTR-intron	ENST00000550389	ENST00000441218		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-3CDS	ENST00000397997	ENST00000550916		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000397997	ENST00000378689		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000397997	ENST00000435775		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000397997	ENST00000378692		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000397997	ENST00000320460		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000397997	ENST00000547164		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000397997	ENST00000441218		TCGA	RV	SARC	TCGA-DX-A6BF-01A	FRS2	chr12	69864310	+	GLIPR1L2	chr12	75816684	+
intron-3CDS	ENST00000322191	ENST00000215939		TCGA	RV	SARC	TCGA-JV-A75J-01A	PANK1	chr10	91404357	-	CRYBB1	chr22	27008154	-
intron-3CDS	ENST00000342512	ENST00000215939		TCGA	RV	SARC	TCGA-JV-A75J-01A	PANK1	chr10	91404357	-	CRYBB1	chr22	27008154	-
intron-3CDS	ENST00000371774	ENST00000215939		TCGA	RV	SARC	TCGA-JV-A75J-01A	PANK1	chr10	91404357	-	CRYBB1	chr22	27008154	-
In-frame	ENST00000307534	ENST00000215939		TCGA	RV	SARC	TCGA-JV-A75J-01A	PANK1	chr10	91404357	-	CRYBB1	chr22	27008154	-
intron-3CDS	ENST00000488482	ENST00000215939		TCGA	RV	SARC	TCGA-JV-A75J-01A	PANK1	chr10	91404357	-	CRYBB1	chr22	27008154	-
Frame-shit	ENST00000321196	ENST00000261267		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000321196	ENST00000549690		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000321196	ENST00000548839		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000548305	ENST00000261267		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000548305	ENST00000549690		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000548305	ENST00000548839		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000549919	ENST00000261267		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000549919	ENST00000549690		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000549919	ENST00000548839		TCGA	RV	SARC	TCGA-DX-A3U5-01A	TMTC2	chr12	83379825	+	LYZ	chr12	69743888	+
5CDS-intron	ENST00000395811	ENST00000437538		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395811	ENST00000579315		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395811	ENST00000261652		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395811	ENST00000583789		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-5UTR	ENST00000395811	ENST00000581616		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000444976	ENST00000437538		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000444976	ENST00000579315		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000444976	ENST00000261652		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000444976	ENST00000583789		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-5UTR	ENST00000444976	ENST00000581616		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395804	ENST00000437538		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395804	ENST00000579315		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395804	ENST00000261652		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395804	ENST00000583789		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-5UTR	ENST00000395804	ENST00000581616		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000341712	ENST00000437538		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000341712	ENST00000579315		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000341712	ENST00000261652		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000341712	ENST00000583789		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-5UTR	ENST00000341712	ENST00000581616		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395806	ENST00000437538		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395806	ENST00000579315		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395806	ENST00000261652		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-intron	ENST00000395806	ENST00000583789		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
5CDS-5UTR	ENST00000395806	ENST00000581616		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
3UTR-intron	ENST00000395807	ENST00000437538		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
3UTR-intron	ENST00000395807	ENST00000579315		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
3UTR-intron	ENST00000395807	ENST00000261652		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
3UTR-intron	ENST00000395807	ENST00000583789		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
3UTR-5UTR	ENST00000395807	ENST00000581616		TCGA	RV	SARC	TCGA-DX-A3M1-01A	MPRIP	chr17	16946285	+	TNFRSF13B	chr17	16855897	-
Frame-shit	ENST00000261263	ENST00000535225		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	SLC4A8	chr12	51863398	+
Frame-shit	ENST00000261263	ENST00000358657		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	SLC4A8	chr12	51863398	+
Frame-shit	ENST00000261263	ENST00000453097		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	SLC4A8	chr12	51863398	+
Frame-shit	ENST00000261263	ENST00000394856		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	SLC4A8	chr12	51863398	+
Frame-shit	ENST00000261263	ENST00000514353		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	SLC4A8	chr12	51863398	+
5CDS-3UTR	ENST00000261263	ENST00000546663		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72167802	+	SLC4A8	chr12	51863398	+
Frame-shit	ENST00000283943	ENST00000326427		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-intron	ENST00000283943	ENST00000335005		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-intron	ENST00000283943	ENST00000326407		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-5UTR	ENST00000283943	ENST00000409704		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-3UTR	ENST00000283943	ENST00000492029		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-3CDS	ENST00000389045	ENST00000326427		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-intron	ENST00000389045	ENST00000335005		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-intron	ENST00000389045	ENST00000326407		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-5UTR	ENST00000389045	ENST00000409704		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-3UTR	ENST00000389045	ENST00000492029		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
Frame-shit	ENST00000389044	ENST00000326427		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-intron	ENST00000389044	ENST00000335005		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-intron	ENST00000389044	ENST00000326407		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-5UTR	ENST00000389044	ENST00000409704		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-3UTR	ENST00000389044	ENST00000492029		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-3CDS	ENST00000543084	ENST00000326427		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-intron	ENST00000543084	ENST00000335005		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-intron	ENST00000543084	ENST00000326407		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-5UTR	ENST00000543084	ENST00000409704		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
intron-3UTR	ENST00000543084	ENST00000492029		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
Frame-shit	ENST00000409677	ENST00000326427		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-intron	ENST00000409677	ENST00000335005		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-intron	ENST00000409677	ENST00000326407		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-5UTR	ENST00000409677	ENST00000409704		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
5CDS-3UTR	ENST00000409677	ENST00000492029		TCGA	RV	SARC	TCGA-DX-A8BX-01A	TRIP12	chr2	230723488	-	ITM2C	chr2	231738132	+
Frame-shit	ENST00000375217	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375217	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
In-frame	ENST00000375217	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375226	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375226	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
In-frame	ENST00000375226	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375267	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375267	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
In-frame	ENST00000375267	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375254	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
Frame-shit	ENST00000375254	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
In-frame	ENST00000375254	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375225	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375225	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375225	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000429347	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000429347	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000429347	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375224	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375224	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375224	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000543981	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000543981	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000543981	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000467272	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000467272	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000467272	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375218	ENST00000374640		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375218	ENST00000374639		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3CDS	ENST00000375218	ENST00000374637		TCGA	RV	SARC	TCGA-DX-AB2O-01A	UBR4	chr1	19447683	-	C1QC	chr1	22973720	+
intron-3UTR	ENST00000400967	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000400967	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
intron-intron	ENST00000400967	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
intron-intron	ENST00000400967	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000235453	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000235453	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000235453	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000235453	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000367396	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000367396	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000367396	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000367396	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000477581	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000477581	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000477581	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000477581	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A1KU-01A	DENND1B	chr1	197741998	-	TSPAN31	chr12	58140372	+
5CDS-5UTR	ENST00000280333	ENST00000368622		TCGA	RV	SARC	TCGA-DX-A8BT-01A	DOCK1	chr10	128594132	+	STK32C	chr10	134059459	-
5CDS-5UTR	ENST00000280333	ENST00000368625		TCGA	RV	SARC	TCGA-DX-A8BT-01A	DOCK1	chr10	128594132	+	STK32C	chr10	134059459	-
intron-5UTR	ENST00000484400	ENST00000368622		TCGA	RV	SARC	TCGA-DX-A8BT-01A	DOCK1	chr10	128594132	+	STK32C	chr10	134059459	-
intron-5UTR	ENST00000484400	ENST00000368625		TCGA	RV	SARC	TCGA-DX-A8BT-01A	DOCK1	chr10	128594132	+	STK32C	chr10	134059459	-
In-frame	ENST00000398665	ENST00000403486		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
Frame-shit	ENST00000398665	ENST00000320078		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
Frame-shit	ENST00000398665	ENST00000401740		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
In-frame	ENST00000398665	ENST00000306322		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
In-frame	ENST00000398665	ENST00000595312		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
intron-3CDS	ENST00000608122	ENST00000403486		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
intron-3CDS	ENST00000608122	ENST00000320078		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
intron-3CDS	ENST00000608122	ENST00000401740		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
intron-3CDS	ENST00000608122	ENST00000306322		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
intron-3CDS	ENST00000608122	ENST00000595312		TCGA	RV	SARC	TCGA-DX-A6B9-01A	DOT1L	chr19	2164264	+	PSG11	chr19	43523200	-
Frame-shit	ENST00000383578	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000383578	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000383578	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000383578	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-3CDS	ENST00000319815	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-intron	ENST00000319815	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-intron	ENST00000319815	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-intron	ENST00000319815	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
In-frame	ENST00000251101	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000251101	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000251101	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000251101	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
In-frame	ENST00000340116	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000340116	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000340116	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000340116	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
In-frame	ENST00000580982	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000580982	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000580982	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000580982	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-3CDS	ENST00000583973	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-intron	ENST00000583973	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-intron	ENST00000583973	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
intron-intron	ENST00000583973	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
Frame-shit	ENST00000539164	ENST00000433473		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000539164	ENST00000372775		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000539164	ENST00000449045		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-intron	ENST00000539164	ENST00000530076		TCGA	RV	SARC	TCGA-X6-A8C3-01A	ENOSF1	chr18	706470	-	PPT1	chr1	40558179	-
5CDS-5UTR	ENST00000403681	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000403681	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000403681	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000403681	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000541363	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000541363	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000541363	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000541363	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000393577	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000393577	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000393577	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000393577	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000393578	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000393578	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000393578	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000393578	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000425208	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000425208	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000425208	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000425208	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000536545	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000536545	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000536545	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000536545	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000354636	ENST00000333003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-intron	ENST00000354636	ENST00000545833		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000354636	ENST00000393101		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
5CDS-5UTR	ENST00000354636	ENST00000330677		TCGA	RV	SARC	TCGA-DX-A3M1-01A	HMGA2	chr12	66232349	+	NR2C1	chr12	95461167	-
Frame-shit	ENST00000266712	ENST00000376874		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMTC3	chr12	88554628	+	RILPL1	chr12	123970352	-
Frame-shit	ENST00000266712	ENST00000340724		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMTC3	chr12	88554628	+	RILPL1	chr12	123970352	-
5CDS-intron	ENST00000266712	ENST00000544468		TCGA	RV	SARC	TCGA-3B-A9HO-01A	TMTC3	chr12	88554628	+	RILPL1	chr12	123970352	-
Frame-shit	ENST00000393432	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
Frame-shit	ENST00000393432	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000442819	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000442819	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000356731	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000356731	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000329433	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000329433	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000510411	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
In-frame	ENST00000510411	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000511300	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000511300	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000524180	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000524180	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044990	-	INSR	chr19	7184648	-
5UTR-3CDS	ENST00000299293	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
5UTR-intron	ENST00000299293	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
5UTR-3CDS	ENST00000549921	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
5UTR-3CDS	ENST00000550389	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
intron-3CDS	ENST00000397997	ENST00000266688		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000547485		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRQ	chr12	81072381	+
5UTR-3CDS	ENST00000368682	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000368682	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000368682	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-intron	ENST00000368682	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000354650	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000354650	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000354650	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-intron	ENST00000354650	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000229471	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000229471	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000229471	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-intron	ENST00000229471	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000368667	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000368667	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000368667	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-intron	ENST00000368667	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000368678	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000368678	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000368678	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-intron	ENST00000368678	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000229470	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000229470	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000229470	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-intron	ENST00000229470	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000356013	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000356013	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-3CDS	ENST00000356013	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5UTR-intron	ENST00000356013	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000538466	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000538466	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000538466	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-intron	ENST00000538466	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000476769	ENST00000368911		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000476769	ENST00000323817		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-3CDS	ENST00000476769	ENST00000413605		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
intron-intron	ENST00000476769	ENST00000497709		TCGA	RV	SARC	TCGA-3B-A9HL-01A	FYN	chr6	112194171	-	CDK19	chr6	110953364	-
5CDS-intron	ENST00000343289	ENST00000490577		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5CDS-intron	ENST00000343289	ENST00000378180		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5CDS-intron	ENST00000404739	ENST00000490577		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5CDS-intron	ENST00000404739	ENST00000378180		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5UTR-intron	ENST00000369857	ENST00000490577		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5UTR-intron	ENST00000369857	ENST00000378180		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5CDS-intron	ENST00000423468	ENST00000490577		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5CDS-intron	ENST00000423468	ENST00000378180		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
intron-intron	ENST00000470299	ENST00000490577		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
intron-intron	ENST00000470299	ENST00000378180		TCGA	RV	SARC	TCGA-FX-A76Y-01A	NT5C2	chr10	104899163	-	DLEU1	chr13	50678840	+
5CDS-3UTR	ENST00000273047	ENST00000460467		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-5UTR	ENST00000273047	ENST00000396755		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-5UTR	ENST00000273047	ENST00000418129		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-5UTR	ENST00000273047	ENST00000432376		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-3UTR	ENST00000422242	ENST00000460467		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-5UTR	ENST00000422242	ENST00000396755		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-5UTR	ENST00000422242	ENST00000418129		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
5CDS-5UTR	ENST00000422242	ENST00000432376		TCGA	RV	SARC	TCGA-DX-A1KY-01A	RAB5A	chr3	19992553	+	PLCL2	chr3	17051166	+
intron-3CDS	ENST00000546961	ENST00000327087		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
intron-3CDS	ENST00000546961	ENST00000546188		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
intron-3CDS	ENST00000546961	ENST00000356134		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
intron-5UTR	ENST00000546961	ENST00000538154		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000550891	ENST00000327087		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000550891	ENST00000546188		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000550891	ENST00000356134		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
5CDS-5UTR	ENST00000550891	ENST00000538154		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000354534	ENST00000327087		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000354534	ENST00000546188		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000354534	ENST00000356134		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
5CDS-5UTR	ENST00000354534	ENST00000538154		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000545061	ENST00000327087		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000545061	ENST00000546188		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
In-frame	ENST00000545061	ENST00000356134		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
5CDS-5UTR	ENST00000545061	ENST00000538154		TCGA	RV	SARC	TCGA-3B-A9HL-01A	SCN8A	chr12	52056877	+	ANO2	chr12	5756967	-
5CDS-intron	ENST00000546373	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000546373	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000551568	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5CDS-intron	ENST00000338356	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000331471		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000488961		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000330891		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000553096		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000476098		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000266661		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000551160		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000393365		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
intron-intron	ENST00000549691	ENST00000533674		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	BEST3	chr12	70049593	-
5UTR-3CDS	ENST00000265192	ENST00000394817		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-3CDS	ENST00000265192	ENST00000265195		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-3CDS	ENST00000265192	ENST00000509534		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-intron	ENST00000265192	ENST00000515008		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
3UTR-3CDS	ENST00000511381	ENST00000394817		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
3UTR-3CDS	ENST00000511381	ENST00000265195		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
3UTR-3CDS	ENST00000511381	ENST00000509534		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
3UTR-intron	ENST00000511381	ENST00000515008		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-3CDS	ENST00000511706	ENST00000394817		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-3CDS	ENST00000511706	ENST00000265195		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-3CDS	ENST00000511706	ENST00000509534		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
5UTR-intron	ENST00000511706	ENST00000515008		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-3CDS	ENST00000394795	ENST00000394817		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-3CDS	ENST00000394795	ENST00000265195		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-3CDS	ENST00000394795	ENST00000509534		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-intron	ENST00000394795	ENST00000515008		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-3CDS	ENST00000510080	ENST00000394817		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-3CDS	ENST00000510080	ENST00000265195		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-3CDS	ENST00000510080	ENST00000509534		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
intron-intron	ENST00000510080	ENST00000515008		TCGA	RV	SARC	TCGA-DX-A48P-01A	PAIP2	chr5	138677669	+	SIL1	chr5	138386735	-
Frame-shit	ENST00000521913	ENST00000403668		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000444075		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000287701		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000558662		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000523613		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000397358		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000519047		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000355231		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000521913	ENST00000524238		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
5CDS-intron	ENST00000521913	ENST00000517386		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000403668		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000444075		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000287701		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000558662		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000523613		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000397358		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000519047		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000355231		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000311151	ENST00000524238		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
5CDS-intron	ENST00000311151	ENST00000517386		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000403668		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000444075		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000287701		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000558662		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000523613		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000397358		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000519047		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000355231		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000523027	ENST00000524238		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
5CDS-intron	ENST00000523027	ENST00000517386		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000403668		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000444075		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000287701		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000558662		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000523613		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000397358		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000519047		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000355231		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-3CDS	ENST00000521983	ENST00000524238		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
intron-intron	ENST00000521983	ENST00000517386		TCGA	RV	SARC	TCGA-DX-AB2O-01A	DPYSL2	chr8	26441499	+	HMBOX1	chr8	28837588	+
Frame-shit	ENST00000373625	ENST00000331456		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
Frame-shit	ENST00000373625	ENST00000469027		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
5CDS-5UTR	ENST00000373625	ENST00000473863		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000537234	ENST00000331456		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000537234	ENST00000469027		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-5UTR	ENST00000537234	ENST00000473863		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000469790	ENST00000331456		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000469790	ENST00000469027		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-5UTR	ENST00000469790	ENST00000473863		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000545542	ENST00000331456		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000545542	ENST00000469027		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
intron-5UTR	ENST00000545542	ENST00000473863		TCGA	RV	SARC	TCGA-HS-A5N9-01A	KPNA6	chr1	32573735	+	TRAIP	chr3	49885633	-
In-frame	ENST00000355086	ENST00000261234		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
5CDS-intron	ENST00000355086	ENST00000537982		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
5CDS-intron	ENST00000355086	ENST00000537373		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
In-frame	ENST00000357825	ENST00000261234		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
5CDS-intron	ENST00000357825	ENST00000537982		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
5CDS-intron	ENST00000357825	ENST00000537373		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
intron-3CDS	ENST00000543397	ENST00000261234		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
intron-intron	ENST00000543397	ENST00000537982		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
intron-intron	ENST00000543397	ENST00000537373		TCGA	RV	SARC	TCGA-DX-A2J1-01A	SRGAP1	chr12	64238663	+	TMEM5	chr12	64202455	+
5CDS-3UTR	ENST00000344824	ENST00000600243		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
5CDS-3UTR	ENST00000344824	ENST00000434646		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
5CDS-3UTR	ENST00000344824	ENST00000377693		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
5CDS-3UTR	ENST00000538887	ENST00000600243		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
5CDS-3UTR	ENST00000538887	ENST00000434646		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
5CDS-3UTR	ENST00000538887	ENST00000377693		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
intron-3UTR	ENST00000300933	ENST00000600243		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
intron-3UTR	ENST00000300933	ENST00000434646		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
intron-3UTR	ENST00000300933	ENST00000377693		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
intron-3UTR	ENST00000591645	ENST00000600243		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
intron-3UTR	ENST00000591645	ENST00000434646		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
intron-3UTR	ENST00000591645	ENST00000377693		TCGA	RV	SARC	TCGA-3B-A9HX-01A	TPM4	chr19	16178548	+	IGFL2	chr19	46663672	+
In-frame	ENST00000548058	ENST00000275016		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81472210	+	CYP39A1	chr6	46518174	-
5CDS-intron	ENST00000548058	ENST00000489657		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81472210	+	CYP39A1	chr6	46518174	-
In-frame	ENST00000261206	ENST00000275016		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81472210	+	CYP39A1	chr6	46518174	-
5CDS-intron	ENST00000261206	ENST00000489657		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81472210	+	CYP39A1	chr6	46518174	-
intron-3CDS	ENST00000548324	ENST00000275016		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81472210	+	CYP39A1	chr6	46518174	-
intron-intron	ENST00000548324	ENST00000489657		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81472210	+	CYP39A1	chr6	46518174	-
Frame-shit	ENST00000543086	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
Frame-shit	ENST00000546231	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
Frame-shit	ENST00000397203	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
Frame-shit	ENST00000360905	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
Frame-shit	ENST00000589028	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
Frame-shit	ENST00000355446	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
intron-3CDS	ENST00000536573	ENST00000258455		TCGA	RV	SARC	TCGA-QQ-A5VC-01A	ERC1	chr12	1481143	+	MRPS9	chr2	105716128	+
In-frame	ENST00000271915	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
In-frame	ENST00000271915	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
In-frame	ENST00000361147	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
In-frame	ENST00000361147	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
Frame-shit	ENST00000358505	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
Frame-shit	ENST00000358505	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
intron-3CDS	ENST00000515643	ENST00000247843		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
intron-3CDS	ENST00000515643	ENST00000548020		TCGA	RV	SARC	TCGA-FX-A2QS-01A	KCNN3	chr1	154705479	-	YEATS4	chr12	69756568	+
In-frame	ENST00000375759	ENST00000375799		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16060292	+
In-frame	ENST00000375759	ENST00000375793		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16060292	+
5CDS-3UTR	ENST00000375759	ENST00000477849		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16060292	+
3UTR-3CDS	ENST00000471538	ENST00000375799		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16060292	+
3UTR-3CDS	ENST00000471538	ENST00000375793		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16060292	+
3UTR-3UTR	ENST00000471538	ENST00000477849		TCGA	RV	SARC	TCGA-LI-A9QH-01A	SPEN	chr1	16203173	+	PLEKHM2	chr1	16060292	+
intron-3CDS	ENST00000448507	ENST00000264956		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000448507	ENST00000382674		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000448507	ENST00000509451		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000448507	ENST00000515113		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000409757	ENST00000264956		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000409757	ENST00000382674		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000409757	ENST00000509451		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000409757	ENST00000515113		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000410031	ENST00000264956		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000410031	ENST00000382674		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000410031	ENST00000509451		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000410031	ENST00000515113		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
In-frame	ENST00000451522	ENST00000264956		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
In-frame	ENST00000451522	ENST00000382674		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
5CDS-intron	ENST00000451522	ENST00000509451		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
5CDS-intron	ENST00000451522	ENST00000515113		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000446947	ENST00000264956		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-3CDS	ENST00000446947	ENST00000382674		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000446947	ENST00000509451		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
intron-intron	ENST00000446947	ENST00000515113		TCGA	RV	SARC	TCGA-DX-AB2O-01A	TBC1D14	chr4	6989076	+	EVC	chr4	5785279	+
Frame-shit	ENST00000331710	ENST00000321196		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMTC2	chr12	83455547	+
5CDS-intron	ENST00000331710	ENST00000548305		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMTC2	chr12	83455547	+
5CDS-intron	ENST00000331710	ENST00000549919		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMTC2	chr12	83455547	+
In-frame	ENST00000539652	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000539652	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000539652	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000539652	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000539652	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000539652	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000556010	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000556010	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000556010	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000556010	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000556010	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000556010	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000358230	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000358230	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000358230	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000358230	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000358230	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000358230	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
intron-3CDS	ENST00000544599	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
intron-3CDS	ENST00000544599	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
intron-3CDS	ENST00000544599	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
intron-5UTR	ENST00000544599	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
intron-5UTR	ENST00000544599	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
intron-3UTR	ENST00000544599	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000286424	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000286424	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000286424	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000286424	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000286424	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000286424	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000398033	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000398033	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000398033	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000398033	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000398033	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000398033	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000542724	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000542724	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
In-frame	ENST00000542724	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000542724	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000542724	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000542724	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5UTR-3CDS	ENST00000535812	ENST00000342287		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5UTR-3CDS	ENST00000535812	ENST00000373487		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5UTR-3CDS	ENST00000535812	ENST00000373489		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5UTR-5UTR	ENST00000535812	ENST00000373483		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5UTR-5UTR	ENST00000535812	ENST00000447726		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
5UTR-3UTR	ENST00000535812	ENST00000538998		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TMBIM4	chr12	66563635	-	PBX3	chr9	128691934	+
Frame-shit	ENST00000263398	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000263398	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000263398	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000263398	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000263398	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000526025	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000526025	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000526025	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000526025	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000526025	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000449691	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000449691	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000449691	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000449691	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000449691	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000360158	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000360158	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000360158	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000360158	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000360158	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000415148	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000415148	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000415148	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000415148	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000415148	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000437706	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000437706	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000437706	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000437706	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000437706	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000433354	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000433354	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000433354	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000433354	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000433354	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000428726	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000428726	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000428726	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000428726	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000428726	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000526669	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000526669	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000526669	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000526669	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000526669	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000433892	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000433892	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000433892	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000433892	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000433892	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000278386	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000278386	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000278386	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000278386	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000278386	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000434472	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000434472	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000434472	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000434472	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000434472	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000352818	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000352818	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
In-frame	ENST00000352818	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
Frame-shit	ENST00000352818	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
5CDS-intron	ENST00000352818	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
intron-3CDS	ENST00000528922	ENST00000533608		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
intron-3CDS	ENST00000528922	ENST00000358681		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
intron-3CDS	ENST00000528922	ENST00000395673		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
intron-3CDS	ENST00000528922	ENST00000343631		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
intron-intron	ENST00000528922	ENST00000529186		TCGA	RV	SARC	TCGA-X6-A8C6-01A	CD44	chr11	35160917	+	EXT2	chr11	44265699	+
intron-3CDS	ENST00000550385	ENST00000389153		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
intron-3CDS	ENST00000550385	ENST00000608853		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
intron-3CDS	ENST00000550385	ENST00000377617		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
intron-3CDS	ENST00000550385	ENST00000550104		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
intron-3CDS	ENST00000550385	ENST00000542287		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
intron-3CDS	ENST00000550385	ENST00000535949		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
intron-intron	ENST00000550385	ENST00000549455		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000229266	ENST00000389153		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000229266	ENST00000608853		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000229266	ENST00000377617		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000229266	ENST00000550104		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000229266	ENST00000542287		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000229266	ENST00000535949		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
5CDS-intron	ENST00000229266	ENST00000549455		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000549872	ENST00000389153		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000549872	ENST00000608853		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000549872	ENST00000377617		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000549872	ENST00000550104		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000549872	ENST00000542287		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000549872	ENST00000535949		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
5CDS-intron	ENST00000549872	ENST00000549455		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CHPT1	chr12	102091912	+	ATXN2	chr12	111948386	-
Frame-shit	ENST00000435070	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000435070	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000435070	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000456847	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000456847	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000456847	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000266679	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000266679	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000266679	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
3UTR-3CDS	ENST00000550987	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
3UTR-3CDS	ENST00000550987	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
3UTR-3CDS	ENST00000550987	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000551516	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000551516	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
Frame-shit	ENST00000551516	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A3NK-01A	CPSF6	chr12	69633486	+	TMTC2	chr12	83250789	+
3UTR-3CDS	ENST00000396725	ENST00000280326		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000396725	ENST00000503026		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000396725	ENST00000515390		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000396725	ENST00000515676		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000396725	ENST00000506600		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000251761	ENST00000280326		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000251761	ENST00000503026		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000251761	ENST00000515390		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000251761	ENST00000515676		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000251761	ENST00000506600		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000606935	ENST00000280326		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000606935	ENST00000503026		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000606935	ENST00000515390		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000606935	ENST00000515676		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000606935	ENST00000506600		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000538102	ENST00000280326		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000538102	ENST00000503026		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000538102	ENST00000515390		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000538102	ENST00000515676		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
intron-intron	ENST00000538102	ENST00000506600		TCGA	RV	SARC	TCGA-IW-A3M5-01A	LEPREL2	chr12	6949010	+	CCT5	chr5	10250033	+
5UTR-5UTR	ENST00000244769	ENST00000537259		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000244769	ENST00000339868		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000244769	ENST00000261892		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000244769	ENST00000544319		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000244769	ENST00000399033		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000244769	ENST00000546330		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000244769	ENST00000449142		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-5UTR	ENST00000436367	ENST00000537259		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000436367	ENST00000339868		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000436367	ENST00000261892		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000436367	ENST00000544319		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000436367	ENST00000399033		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000436367	ENST00000546330		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-intron	ENST00000436367	ENST00000449142		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-5UTR	ENST00000467008	ENST00000537259		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-intron	ENST00000467008	ENST00000339868		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-intron	ENST00000467008	ENST00000261892		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-intron	ENST00000467008	ENST00000544319		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-intron	ENST00000467008	ENST00000399033		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-intron	ENST00000467008	ENST00000546330		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
intron-intron	ENST00000467008	ENST00000449142		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	SLC24A1	chr15	65911218	+
5UTR-3CDS	ENST00000299293	ENST00000585892		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000299293	ENST00000314646		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000299293	ENST00000359692		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000299293	ENST00000389253		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000299293	ENST00000355667		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000299293	ENST00000408974		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-intron	ENST00000299293	ENST00000591819		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000549921	ENST00000585892		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000549921	ENST00000314646		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000549921	ENST00000359692		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000549921	ENST00000389253		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000549921	ENST00000355667		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000549921	ENST00000408974		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-intron	ENST00000549921	ENST00000591819		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000550389	ENST00000585892		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000550389	ENST00000314646		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000550389	ENST00000359692		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000550389	ENST00000389253		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000550389	ENST00000355667		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-3CDS	ENST00000550389	ENST00000408974		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
5UTR-intron	ENST00000550389	ENST00000591819		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000397997	ENST00000585892		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000397997	ENST00000314646		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000397997	ENST00000359692		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000397997	ENST00000389253		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000397997	ENST00000355667		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000397997	ENST00000408974		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-intron	ENST00000397997	ENST00000591819		TCGA	RV	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	DNM2	chr19	10904396	+
intron-3CDS	ENST00000520052	ENST00000297350		TCGA	RV	SARC	TCGA-DX-AB2E-01A	ANGPT1	chr8	108509490	-	TNFRSF11B	chr8	119945539	-
intron-3CDS	ENST00000520734	ENST00000297350		TCGA	RV	SARC	TCGA-DX-AB2E-01A	ANGPT1	chr8	108509490	-	TNFRSF11B	chr8	119945539	-
intron-3CDS	ENST00000518386	ENST00000297350		TCGA	RV	SARC	TCGA-DX-AB2E-01A	ANGPT1	chr8	108509490	-	TNFRSF11B	chr8	119945539	-
In-frame	ENST00000368533	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368533	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368533	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368533	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000368533	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000469717	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000469717	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000469717	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000469717	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5UTR-intron	ENST00000469717	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000330188	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000330188	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000330188	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000330188	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000330188	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341485	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341485	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341485	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341485	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000341485	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341372	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341372	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341372	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000341372	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000341372	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000328159	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000328159	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000328159	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000328159	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000328159	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000271850	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000271850	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000271850	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000271850	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000271850	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
Frame-shit	ENST00000302206	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
Frame-shit	ENST00000302206	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
Frame-shit	ENST00000302206	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
Frame-shit	ENST00000302206	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000302206	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368531	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368531	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368531	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368531	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000368531	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000323144	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000323144	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000323144	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000323144	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000323144	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368530	ENST00000392302		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368530	ENST00000368196		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368530	ENST00000524377		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
In-frame	ENST00000368530	ENST00000358660		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000368530	ENST00000531606		TCGA	RV	SARC	TCGA-DX-A3UA-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000368346	ENST00000236147		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ASH1L	chr1	155531944	-	SELL	chr1	169665694	-
5UTR-intron	ENST00000368346	ENST00000463108		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ASH1L	chr1	155531944	-	SELL	chr1	169665694	-
5UTR-3CDS	ENST00000392403	ENST00000236147		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ASH1L	chr1	155531944	-	SELL	chr1	169665694	-
5UTR-intron	ENST00000392403	ENST00000463108		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ASH1L	chr1	155531944	-	SELL	chr1	169665694	-
5UTR-3CDS	ENST00000548830	ENST00000236147		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ASH1L	chr1	155531944	-	SELL	chr1	169665694	-
5UTR-intron	ENST00000548830	ENST00000463108		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ASH1L	chr1	155531944	-	SELL	chr1	169665694	-
In-frame	ENST00000504595	ENST00000229238		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
5CDS-5UTR	ENST00000504595	ENST00000543164		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
5CDS-intron	ENST00000504595	ENST00000543703		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000510662	ENST00000229238		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000510662	ENST00000543164		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000510662	ENST00000543703		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
intron-3CDS	ENST00000329673	ENST00000229238		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
intron-5UTR	ENST00000329673	ENST00000543164		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
intron-intron	ENST00000329673	ENST00000543703		TCGA	RV	SARC	TCGA-DX-A1KZ-01A	FBXL7	chr5	15500822	+	MRPL51	chr12	6602138	-
5UTR-3CDS	ENST00000299293	ENST00000368250		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000299293	ENST00000368248		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000299293	ENST00000543064		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000299293	ENST00000537166		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000549921	ENST00000368250		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000549921	ENST00000368248		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000549921	ENST00000543064		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000549921	ENST00000537166		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000550389	ENST00000368250		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000550389	ENST00000368248		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000550389	ENST00000543064		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
5UTR-3CDS	ENST00000550389	ENST00000537166		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000397997	ENST00000368250		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000397997	ENST00000368248		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000397997	ENST00000543064		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
intron-3CDS	ENST00000397997	ENST00000537166		TCGA	RV	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	THEMIS	chr6	128040968	-
Frame-shit	ENST00000299505	ENST00000590341		TCGA	RV	SARC	TCGA-DX-A8BN-01A	KIAA0355	chr19	34840058	+	SLC7A9	chr19	33324229	-
Frame-shit	ENST00000299505	ENST00000023064		TCGA	RV	SARC	TCGA-DX-A8BN-01A	KIAA0355	chr19	34840058	+	SLC7A9	chr19	33324229	-
Frame-shit	ENST00000299505	ENST00000587772		TCGA	RV	SARC	TCGA-DX-A8BN-01A	KIAA0355	chr19	34840058	+	SLC7A9	chr19	33324229	-
intron-3CDS	ENST00000592124	ENST00000590341		TCGA	RV	SARC	TCGA-DX-A8BN-01A	KIAA0355	chr19	34840058	+	SLC7A9	chr19	33324229	-
intron-3CDS	ENST00000592124	ENST00000023064		TCGA	RV	SARC	TCGA-DX-A8BN-01A	KIAA0355	chr19	34840058	+	SLC7A9	chr19	33324229	-
intron-3CDS	ENST00000592124	ENST00000587772		TCGA	RV	SARC	TCGA-DX-A8BN-01A	KIAA0355	chr19	34840058	+	SLC7A9	chr19	33324229	-
intron-3CDS	ENST00000455789	ENST00000409484		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-intron	ENST00000455789	ENST00000468308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-intron	ENST00000455789	ENST00000321348		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-intron	ENST00000455789	ENST00000375252		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
In-frame	ENST00000310015	ENST00000409484		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
5CDS-intron	ENST00000310015	ENST00000468308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
5CDS-intron	ENST00000310015	ENST00000321348		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
5CDS-intron	ENST00000310015	ENST00000375252		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
In-frame	ENST00000418194	ENST00000409484		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
5CDS-intron	ENST00000418194	ENST00000468308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
5CDS-intron	ENST00000418194	ENST00000321348		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
5CDS-intron	ENST00000418194	ENST00000375252		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-3CDS	ENST00000483084	ENST00000409484		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-intron	ENST00000483084	ENST00000468308		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-intron	ENST00000483084	ENST00000321348		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
intron-intron	ENST00000483084	ENST00000375252		TCGA	RV	SARC	TCGA-DX-A1KY-01A	SP3	chr2	174828489	-	CYBRD1	chr2	172409856	+
Frame-shit	ENST00000402676	ENST00000369162		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
5CDS-intron	ENST00000402676	ENST00000522650		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
5CDS-intron	ENST00000402676	ENST00000369143		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
Frame-shit	ENST00000253332	ENST00000369162		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
5CDS-intron	ENST00000253332	ENST00000522650		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
5CDS-intron	ENST00000253332	ENST00000369143		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-3CDS	ENST00000354675	ENST00000369162		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-intron	ENST00000354675	ENST00000522650		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-intron	ENST00000354675	ENST00000369143		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-3CDS	ENST00000359755	ENST00000369162		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-intron	ENST00000359755	ENST00000522650		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-intron	ENST00000359755	ENST00000369143		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-3CDS	ENST00000490177	ENST00000369162		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-intron	ENST00000490177	ENST00000522650		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
intron-intron	ENST00000490177	ENST00000369143		TCGA	RV	SARC	TCGA-HB-A3YV-01A	AKAP12	chr6	151561859	+	ASCC3	chr6	101037935	-
5UTR-3CDS	ENST00000299293	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000299293	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000299293	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-intron	ENST00000299293	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000549921	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000549921	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000549921	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-intron	ENST00000549921	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000550389	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000550389	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000550389	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
5UTR-intron	ENST00000550389	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000397997	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000397997	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000397997	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
intron-intron	ENST00000397997	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FRS2	chr12	69864310	+	CPM	chr12	69279669	-
In-frame	ENST00000552912	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
In-frame	ENST00000552912	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
In-frame	ENST00000242591	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
In-frame	ENST00000242591	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
In-frame	ENST00000361948	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
In-frame	ENST00000361948	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
3UTR-3CDS	ENST00000549009	ENST00000341500		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
3UTR-3CDS	ENST00000549009	ENST00000302850		TCGA	RV	SARC	TCGA-3B-A9HS-01A	IFT81	chr12	110574665	+	INSR	chr19	7184648	-
In-frame	ENST00000359523	ENST00000367718		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
In-frame	ENST00000359523	ENST00000281834		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
5CDS-5UTR	ENST00000359523	ENST00000488053		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
intron-3CDS	ENST00000392121	ENST00000367718		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
intron-3CDS	ENST00000392121	ENST00000281834		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
intron-5UTR	ENST00000392121	ENST00000488053		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
intron-3CDS	ENST00000474859	ENST00000367718		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
intron-3CDS	ENST00000474859	ENST00000281834		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
intron-5UTR	ENST00000474859	ENST00000488053		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
3UTR-3CDS	ENST00000403379	ENST00000367718		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
3UTR-3CDS	ENST00000403379	ENST00000281834		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
3UTR-5UTR	ENST00000403379	ENST00000488053		TCGA	RV	SARC	TCGA-DX-A2J0-01A	MPZL1	chr1	167745403	+	TNFSF4	chr1	173157708	-
5CDS-5UTR	ENST00000389749	ENST00000550187		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TRMT61A	chr14	103999185	+	NDUFA12	chr12	95388033	-
5CDS-intron	ENST00000389749	ENST00000547157		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TRMT61A	chr14	103999185	+	NDUFA12	chr12	95388033	-
5CDS-intron	ENST00000389749	ENST00000327772		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TRMT61A	chr14	103999185	+	NDUFA12	chr12	95388033	-
5CDS-intron	ENST00000389749	ENST00000547986		TCGA	RV	SARC	TCGA-DX-A23Y-01A	TRMT61A	chr14	103999185	+	NDUFA12	chr12	95388033	-
In-frame	ENST00000396197	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000396197	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000543987	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000543987	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
5UTR-3CDS	ENST00000540666	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
5UTR-3CDS	ENST00000540666	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
intron-3CDS	ENST00000535484	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
intron-3CDS	ENST00000535484	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000320750	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000320750	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000379387	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000379387	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000541984	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000541984	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000300038	ENST00000331079		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
In-frame	ENST00000300038	ENST00000437750		TCGA	RV	SARC	TCGA-DX-A1KU-01A	UEVLD	chr11	18610160	-	PRMT3	chr11	20473676	+
5UTR-3CDS	ENST00000446085	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000446085	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000446085	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000446085	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000446085	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000541595	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000541595	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000541595	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000541595	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000541595	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000602738	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000602738	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000602738	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000602738	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000602738	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000605471	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000605471	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000605471	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000605471	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000605471	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000602856	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000602856	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000602856	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000602856	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000602856	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000343499	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000343499	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000343499	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000343499	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000343499	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000589262	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000589262	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000589262	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000589262	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000589262	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000434737	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000434737	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000434737	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000434737	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000434737	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3CDS	ENST00000590616	ENST00000215567		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000590616	ENST00000596073		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000590616	ENST00000600083		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-5UTR	ENST00000590616	ENST00000436007		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
intron-3UTR	ENST00000590616	ENST00000596164		TCGA	RV	SARC	TCGA-X6-A8C5-01A	ZNF177	chr19	9475624	+	TECR	chr19	14673337	+
In-frame	ENST00000335762	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000335762	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399655	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399655	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000480911	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000480911	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399644	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399644	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000344100	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000344100	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399638	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399638	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399629	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399629	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399597	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399597	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000327702	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000327702	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399621	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399621	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399649	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399649	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399637	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399637	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000402845	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000402845	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399591	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399591	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399641	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399641	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000347598	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000347598	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399606	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399606	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399595	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399595	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399601	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399601	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399603	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399603	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399634	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399634	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000399617	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000399617	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
In-frame	ENST00000406454	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-intron	ENST00000406454	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
intron-3CDS	ENST00000491104	ENST00000322349		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
intron-intron	ENST00000491104	ENST00000547833		TCGA	RV	SARC	TCGA-DX-A23R-01A	CACNA1C	chr12	2229596	+	EEA1	chr12	93220061	-
5CDS-5UTR	ENST00000437600	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000292538	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000393824	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000547394	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000360264	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000425244	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000292535	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000549414	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000556210	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000550008	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
5CDS-5UTR	ENST00000546411	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
3UTR-5UTR	ENST00000560541	ENST00000303151		TCGA	RV	SARC	TCGA-RN-AAAQ-01A	CUX1	chr7	101801888	+	POP7	chr7	100304444	+
intron-3CDS	ENST00000335670	ENST00000261921		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-intron	ENST00000335670	ENST00000567675		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-3CDS	ENST00000309157	ENST00000261921		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-intron	ENST00000309157	ENST00000567675		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-3CDS	ENST00000261523	ENST00000261921		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-intron	ENST00000261523	ENST00000567675		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
Frame-shit	ENST00000449337	ENST00000261921		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
5CDS-intron	ENST00000449337	ENST00000567675		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-3CDS	ENST00000560004	ENST00000261921		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
intron-intron	ENST00000560004	ENST00000567675		TCGA	RV	SARC	TCGA-X6-A8C3-01A	RORA	chr15	60884586	-	LOXL1	chr15	74235195	+
Frame-shit	ENST00000464451	ENST00000513000		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000509777		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000262992		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000308502		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000508116		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000507861		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000506217		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000464451	ENST00000508084		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
Frame-shit	ENST00000243253	ENST00000513000		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000509777		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000262992		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000308502		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000508116		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000507861		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000506217		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000243253	ENST00000508084		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
Frame-shit	ENST00000424880	ENST00000513000		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000509777		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000262992		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000308502		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000508116		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000507861		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000506217		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5CDS-intron	ENST00000424880	ENST00000508084		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-3CDS	ENST00000483956	ENST00000513000		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000509777		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000262992		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000308502		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000508116		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000507861		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000506217		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
3UTR-intron	ENST00000483956	ENST00000508084		TCGA	RV	SARC	TCGA-DX-A3UA-01A	SEC61A1	chr3	127786902	+	INPP4B	chr4	142950067	-
5UTR-3CDS	ENST00000382592	ENST00000360772		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-3CDS	ENST00000382592	ENST00000359169		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-3CDS	ENST00000382592	ENST00000360304		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000418370		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000578202		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000354792		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000346322		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000583087		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000475616		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-5UTR	ENST00000382592	ENST00000510775		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000542899	ENST00000360772		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000542899	ENST00000359169		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000542899	ENST00000360304		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000418370		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000578202		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000354792		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000346322		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000583087		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000475616		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-5UTR	ENST00000542899	ENST00000510775		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000472754	ENST00000360772		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000472754	ENST00000359169		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000472754	ENST00000360304		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000418370		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000578202		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000354792		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000346322		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000583087		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000475616		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-5UTR	ENST00000472754	ENST00000510775		TCGA	RV	SARC	TCGA-K1-A42X-02A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
Frame-shit	ENST00000536255	ENST00000306357		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000536255	ENST00000574431		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000536255	ENST00000573373		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000381208	ENST00000306357		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000381208	ENST00000574431		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000381208	ENST00000573373		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000381209	ENST00000306357		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000381209	ENST00000574431		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000381209	ENST00000573373		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000327154	ENST00000306357		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000327154	ENST00000574431		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000327154	ENST00000573373		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000405578	ENST00000306357		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000405578	ENST00000574431		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000405578	ENST00000573373		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000574003	ENST00000306357		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
Frame-shit	ENST00000574003	ENST00000574431		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5CDS-intron	ENST00000574003	ENST00000573373		TCGA	RV	SARC	TCGA-HB-A2OT-01A	RPAIN	chr17	5326149	+	STX8	chr17	9153962	-
5UTR-3CDS	ENST00000552432	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000552432	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-intron	ENST00000552432	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000547379	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000547379	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-intron	ENST00000547379	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000549465	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000549465	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-intron	ENST00000549465	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000552024	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000552024	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-intron	ENST00000552024	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000261187	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000261187	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-intron	ENST00000261187	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000543448	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000543448	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-intron	ENST00000543448	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000549588	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000549588	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
intron-intron	ENST00000549588	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC16A7	chr12	59990017	+	ACSS3	chr12	81528595	+
5UTR-5UTR	ENST00000247833	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000247833	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000247833	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000247833	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000378815	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000378815	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000378815	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000378815	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000325555	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000325555	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000325555	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000325555	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000483530	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000483530	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000483530	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
5UTR-5UTR	ENST00000483530	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550536	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550536	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550536	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550536	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000362025	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000362025	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000362025	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000362025	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000551641	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000551641	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000551641	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000551641	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000553099	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000553099	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000553099	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000553099	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550847	ENST00000299293		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550847	ENST00000549921		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550847	ENST00000550389		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
intron-5UTR	ENST00000550847	ENST00000397997		TCGA	RV	SARC	TCGA-3R-A8YX-01A	RAB3IP	chr12	70132811	+	FRS2	chr12	69955960	+
Frame-shit	ENST00000367545	ENST00000448741		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
Frame-shit	ENST00000367545	ENST00000607197		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
Frame-shit	ENST00000367545	ENST00000367697		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
intron-3CDS	ENST00000367526	ENST00000448741		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
intron-3CDS	ENST00000367526	ENST00000607197		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
intron-3CDS	ENST00000367526	ENST00000367697		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
intron-3CDS	ENST00000480333	ENST00000448741		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
intron-3CDS	ENST00000480333	ENST00000607197		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
intron-3CDS	ENST00000480333	ENST00000367697		TCGA	RV	SARC	TCGA-DX-A23T-01A	UTRN	chr6	144613043	+	HEBP2	chr6	138726282	+
Frame-shit	ENST00000374423	ENST00000373635		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ZDBF2	chr2	207146633	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000374423	ENST00000308696		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ZDBF2	chr2	207146633	+	PSMD1	chr2	232003450	+
Frame-shit	ENST00000374423	ENST00000409643		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ZDBF2	chr2	207146633	+	PSMD1	chr2	232003450	+
5CDS-intron	ENST00000374423	ENST00000488354		TCGA	RV	SARC	TCGA-DX-A1KY-01A	ZDBF2	chr2	207146633	+	PSMD1	chr2	232003450	+
In-frame	ENST00000252699	ENST00000593149		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
In-frame	ENST00000252699	ENST00000248342		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000252699	ENST00000593062		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000252699	ENST00000538434		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000252699	ENST00000588934		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000252699	ENST00000545173		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000252699	ENST00000592558		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
In-frame	ENST00000424234	ENST00000593149		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
In-frame	ENST00000424234	ENST00000248342		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000424234	ENST00000593062		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000424234	ENST00000538434		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000424234	ENST00000588934		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000424234	ENST00000545173		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000424234	ENST00000592558		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
In-frame	ENST00000390009	ENST00000593149		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
In-frame	ENST00000390009	ENST00000248342		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000390009	ENST00000593062		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000390009	ENST00000538434		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000390009	ENST00000588934		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000390009	ENST00000545173		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
5CDS-3UTR	ENST00000390009	ENST00000592558		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3CDS	ENST00000497637	ENST00000593149		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3CDS	ENST00000497637	ENST00000248342		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3UTR	ENST00000497637	ENST00000593062		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3UTR	ENST00000497637	ENST00000538434		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3UTR	ENST00000497637	ENST00000588934		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3UTR	ENST00000497637	ENST00000545173		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
intron-3UTR	ENST00000497637	ENST00000592558		TCGA	RV	SARC	TCGA-HS-A5N8-01A	ACTN4	chr19	39138547	+	EIF3K	chr19	39116668	+
In-frame	ENST00000248054	ENST00000221543		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
In-frame	ENST00000248054	ENST00000535102		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
5CDS-3UTR	ENST00000248054	ENST00000598789		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
intron-3CDS	ENST00000596802	ENST00000221543		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
intron-3CDS	ENST00000596802	ENST00000535102		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
intron-3UTR	ENST00000596802	ENST00000598789		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
In-frame	ENST00000379803	ENST00000221543		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
In-frame	ENST00000379803	ENST00000535102		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
5CDS-3UTR	ENST00000379803	ENST00000598789		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
In-frame	ENST00000595541	ENST00000221543		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
In-frame	ENST00000595541	ENST00000535102		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
5CDS-3UTR	ENST00000595541	ENST00000598789		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
intron-3CDS	ENST00000594235	ENST00000221543		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
intron-3CDS	ENST00000594235	ENST00000535102		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
intron-3UTR	ENST00000594235	ENST00000598789		TCGA	RV	SARC	TCGA-3B-A9HX-01A	SIN3B	chr19	16987389	+	TBC1D17	chr19	50383536	+
Frame-shit	ENST00000258534	ENST00000343702		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
Frame-shit	ENST00000258534	ENST00000344911		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
Frame-shit	ENST00000258534	ENST00000538383		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
5CDS-intron	ENST00000258534	ENST00000553059		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
5CDS-intron	ENST00000258534	ENST00000552603		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
Frame-shit	ENST00000544152	ENST00000343702		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
Frame-shit	ENST00000544152	ENST00000344911		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
Frame-shit	ENST00000544152	ENST00000538383		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
5CDS-intron	ENST00000544152	ENST00000553059		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
5CDS-intron	ENST00000544152	ENST00000552603		TCGA	RV	SARC	TCGA-DX-A23V-01A	DRAM1	chr12	102271698	+	NTN4	chr12	96063922	-
In-frame	ENST00000413795	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000413795	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000413795	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000413795	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000413795	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-intron	ENST00000413795	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000369138	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000369138	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000369138	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000369138	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000369138	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-intron	ENST00000369138	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000421544	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000421544	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000421544	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000421544	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000421544	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-intron	ENST00000421544	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
intron-3CDS	ENST00000358361	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
intron-3CDS	ENST00000358361	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
intron-3UTR	ENST00000358361	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
intron-5UTR	ENST00000358361	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
intron-5UTR	ENST00000358361	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
intron-intron	ENST00000358361	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000318991	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000318991	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000318991	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000318991	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000318991	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-intron	ENST00000318991	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000369137	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000369137	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000369137	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000369137	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000369137	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-intron	ENST00000369137	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000369134	ENST00000521654		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000369134	ENST00000560949		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-3UTR	ENST00000369134	ENST00000454842		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000369134	ENST00000368414		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-5UTR	ENST00000369134	ENST00000359704		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
5CDS-intron	ENST00000369134	ENST00000275184		TCGA	RV	SARC	TCGA-HB-A3YV-01A	GRIK2	chr6	102376507	+	RNF217	chr6	125366357	+
In-frame	ENST00000405201	ENST00000339570		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
In-frame	ENST00000405201	ENST00000415380		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
In-frame	ENST00000405201	ENST00000261693		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000405201	ENST00000376788		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000405201	ENST00000546215		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000339570		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000415380		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000261693		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404621	ENST00000376788		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404621	ENST00000546215		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404121	ENST00000339570		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404121	ENST00000415380		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404121	ENST00000261693		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404121	ENST00000376788		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404121	ENST00000546215		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000339570		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000415380		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000261693		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000356219	ENST00000376788		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000356219	ENST00000546215		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000339570		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000415380		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000261693		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000397355	ENST00000376788		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000397355	ENST00000546215		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000339570		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000415380		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000261693		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000429285	ENST00000376788		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000429285	ENST00000546215		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	SARC	TCGA-QQ-A8VH-01A	NCOR2	chr12	124904503	-	SCARB1	chr12	125302253	-
In-frame	ENST00000264933	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000264933	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000264933	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000264933	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000505221	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000505221	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000505221	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000505221	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000509581	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000509581	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000509581	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000509581	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000507528	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000507528	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000507528	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000507528	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
intron-3CDS	ENST00000511482	ENST00000299293		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
intron-3CDS	ENST00000511482	ENST00000549921		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
intron-3CDS	ENST00000511482	ENST00000550389		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
intron-3CDS	ENST00000511482	ENST00000397997		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PDCD6	chr5	272887	+	FRS2	chr12	69965056	+
In-frame	ENST00000396441	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000396441	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000396441	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000396441	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000389707	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000389707	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000389707	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000389707	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000401424	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000401424	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000401424	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000401424	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000389708	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000389708	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000389708	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000389708	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000361003	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000361003	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000361003	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000361003	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403290	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403290	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403290	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000403290	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403510	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403510	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403510	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000403510	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403482	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403482	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
In-frame	ENST00000403482	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000403482	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
3UTR-3CDS	ENST00000497429	ENST00000392837		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
3UTR-3CDS	ENST00000497429	ENST00000392839		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
3UTR-3CDS	ENST00000497429	ENST00000355478		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
3UTR-intron	ENST00000497429	ENST00000549643		TCGA	RV	SARC	TCGA-DX-A3LT-01A	ARNTL	chr11	13381971	+	RIC8B	chr12	107219504	+
5CDS-intron	ENST00000309311	ENST00000322349		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EEF2	chr19	3976055	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000309311	ENST00000547833		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EEF2	chr19	3976055	-	EEA1	chr12	93229203	-
intron-intron	ENST00000600720	ENST00000322349		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EEF2	chr19	3976055	-	EEA1	chr12	93229203	-
intron-intron	ENST00000600720	ENST00000547833		TCGA	RV	SARC	TCGA-HB-A3YV-01A	EEF2	chr19	3976055	-	EEA1	chr12	93229203	-
5UTR-3CDS	ENST00000256689	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000256689	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000256689	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000256689	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000256689	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000256689	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000256689	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-5UTR	ENST00000256689	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-intron	ENST00000256689	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-3CDS	ENST00000551374	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-3CDS	ENST00000551374	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000551374	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000551374	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000551374	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000551374	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000551374	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000551374	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-intron	ENST00000551374	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-3CDS	ENST00000547252	ENST00000247833		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-3CDS	ENST00000547252	ENST00000378815		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000547252	ENST00000325555		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000547252	ENST00000483530		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000547252	ENST00000550536		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000547252	ENST00000362025		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000547252	ENST00000551641		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000547252	ENST00000553099		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
intron-intron	ENST00000547252	ENST00000550847		TCGA	RV	SARC	TCGA-DX-A7EI-01A	SLC38A2	chr12	46766292	-	RAB3IP	chr12	70178500	+
5UTR-3CDS	ENST00000244769	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000244769	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000244769	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000244769	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000244769	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-3CDS	ENST00000436367	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000436367	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000436367	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000436367	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
5UTR-intron	ENST00000436367	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
intron-3CDS	ENST00000467008	ENST00000358155		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
intron-intron	ENST00000467008	ENST00000367733		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
intron-intron	ENST00000467008	ENST00000355305		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
intron-intron	ENST00000467008	ENST00000367731		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
intron-intron	ENST00000467008	ENST00000520906		TCGA	RV	SARC	TCGA-DX-A1L3-01A	ATXN1	chr6	16486203	-	DNM3	chr1	172348158	+
intron-3CDS	ENST00000392474	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000538733	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000337174	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000347034	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000324774	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000545538	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
5UTR-3CDS	ENST00000412367	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
5UTR-3CDS	ENST00000404169	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
5UTR-3CDS	ENST00000402834	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000446440	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
intron-3CDS	ENST00000392473	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
5UTR-3CDS	ENST00000535524	ENST00000301180		TCGA	RV	SARC	TCGA-DX-A1KW-01A	CAMKK2	chr12	121734441	-	DIP2B	chr12	51019759	+
In-frame	ENST00000295754	ENST00000285021		TCGA	RV	SARC	TCGA-DX-A1L2-01A	TGFBR2	chr3	30648469	+	XPC	chr3	14214562	-
In-frame	ENST00000295754	ENST00000449060		TCGA	RV	SARC	TCGA-DX-A1L2-01A	TGFBR2	chr3	30648469	+	XPC	chr3	14214562	-
In-frame	ENST00000359013	ENST00000285021		TCGA	RV	SARC	TCGA-DX-A1L2-01A	TGFBR2	chr3	30648469	+	XPC	chr3	14214562	-
In-frame	ENST00000359013	ENST00000449060		TCGA	RV	SARC	TCGA-DX-A1L2-01A	TGFBR2	chr3	30648469	+	XPC	chr3	14214562	-
5CDS-intron	ENST00000228741	ENST00000359499		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ELK3	chr12	96617551	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000228741	ENST00000304620		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ELK3	chr12	96617551	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000552142	ENST00000359499		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ELK3	chr12	96617551	+	KRT78	chr12	53242405	-
5CDS-intron	ENST00000552142	ENST00000304620		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ELK3	chr12	96617551	+	KRT78	chr12	53242405	-
intron-intron	ENST00000549529	ENST00000359499		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ELK3	chr12	96617551	+	KRT78	chr12	53242405	-
intron-intron	ENST00000549529	ENST00000304620		TCGA	RV	SARC	TCGA-DX-A1KW-01A	ELK3	chr12	96617551	+	KRT78	chr12	53242405	-
5UTR-3CDS	ENST00000299293	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000299293	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-intron	ENST00000299293	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000549921	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000549921	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-intron	ENST00000549921	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000550389	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-3CDS	ENST00000550389	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
5UTR-intron	ENST00000550389	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000397997	ENST00000548058		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
intron-3CDS	ENST00000397997	ENST00000261206		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
intron-intron	ENST00000397997	ENST00000548324		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	ACSS3	chr12	81528595	+
In-frame	ENST00000280871	ENST00000228945		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
In-frame	ENST00000280871	ENST00000541644		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
5CDS-5UTR	ENST00000280871	ENST00000539131		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
5CDS-5UTR	ENST00000280871	ENST00000541546		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
In-frame	ENST00000380858	ENST00000228945		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
In-frame	ENST00000380858	ENST00000541644		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
5CDS-5UTR	ENST00000380858	ENST00000539131		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
5CDS-5UTR	ENST00000380858	ENST00000541546		TCGA	RV	SARC	TCGA-DX-A240-01A	SLC2A13	chr12	40422103	-	ARHGDIB	chr12	15100883	-
5CDS-5UTR	ENST00000452319	ENST00000393328		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000452319	ENST00000393331		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000452319	ENST00000347630		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000452319	ENST00000504102		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000452319	ENST00000503676		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000452319	ENST00000513080		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000314490	ENST00000393328		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000314490	ENST00000393331		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000314490	ENST00000347630		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000314490	ENST00000504102		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000314490	ENST00000503676		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000314490	ENST00000513080		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000361492	ENST00000393328		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000361492	ENST00000393331		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000361492	ENST00000347630		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000361492	ENST00000504102		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000361492	ENST00000503676		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5CDS-5UTR	ENST00000361492	ENST00000513080		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000435313	ENST00000393328		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000435313	ENST00000393331		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000435313	ENST00000347630		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000435313	ENST00000504102		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000435313	ENST00000503676		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
3UTR-5UTR	ENST00000435313	ENST00000513080		TCGA	RV	SARC	TCGA-DX-A6YV-01A	GLI2	chr2	121685042	+	SPOP	chr17	47700238	-
5UTR-3CDS	ENST00000299293	ENST00000378743		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000299293	ENST00000548100		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000299293	ENST00000552037		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000299293	ENST00000549407		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-3CDS	ENST00000549921	ENST00000378743		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000549921	ENST00000548100		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000549921	ENST00000552037		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000549921	ENST00000549407		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-3CDS	ENST00000550389	ENST00000378743		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000550389	ENST00000548100		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000550389	ENST00000552037		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000550389	ENST00000549407		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-3CDS	ENST00000397997	ENST00000378743		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000397997	ENST00000548100		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000397997	ENST00000552037		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000397997	ENST00000549407		TCGA	RV	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69931763	+	ZFC3H1	chr12	72005667	-
5UTR-3CDS	ENST00000315596	ENST00000375820		TCGA	RV	SARC	TCGA-QC-AA9N-01A	PDS5B	chr13	33160730	+	COL4A1	chr13	110895081	-
5UTR-3CDS	ENST00000315596	ENST00000543140		TCGA	RV	SARC	TCGA-QC-AA9N-01A	PDS5B	chr13	33160730	+	COL4A1	chr13	110895081	-
5UTR-intron	ENST00000315596	ENST00000467182		TCGA	RV	SARC	TCGA-QC-AA9N-01A	PDS5B	chr13	33160730	+	COL4A1	chr13	110895081	-
5UTR-3CDS	ENST00000299293	ENST00000402676		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000299293	ENST00000253332		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000299293	ENST00000354675		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000299293	ENST00000359755		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000299293	ENST00000490177		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000549921	ENST00000402676		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000549921	ENST00000253332		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000549921	ENST00000354675		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000549921	ENST00000359755		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000549921	ENST00000490177		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
intron-3CDS	ENST00000550389	ENST00000402676		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
intron-3CDS	ENST00000550389	ENST00000253332		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
intron-intron	ENST00000550389	ENST00000354675		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
intron-intron	ENST00000550389	ENST00000359755		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
intron-intron	ENST00000550389	ENST00000490177		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000397997	ENST00000402676		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-3CDS	ENST00000397997	ENST00000253332		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000397997	ENST00000354675		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000397997	ENST00000359755		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
5UTR-intron	ENST00000397997	ENST00000490177		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69925836	+	AKAP12	chr6	151626882	+
intron-3CDS	ENST00000463381	ENST00000243498		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000463381	ENST00000509980		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000463381	ENST00000379663		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000463381	ENST00000512454		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
Frame-shit	ENST00000473312	ENST00000243498		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000473312	ENST00000509980		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000473312	ENST00000379663		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000473312	ENST00000512454		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
Frame-shit	ENST00000479901	ENST00000243498		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000479901	ENST00000509980		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000479901	ENST00000379663		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000479901	ENST00000512454		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
Frame-shit	ENST00000397238	ENST00000243498		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000397238	ENST00000509980		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000397238	ENST00000379663		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-3UTR	ENST00000397238	ENST00000512454		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3CDS	ENST00000476375	ENST00000243498		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000476375	ENST00000509980		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000476375	ENST00000379663		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000476375	ENST00000512454		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3CDS	ENST00000335367	ENST00000243498		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000335367	ENST00000509980		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000335367	ENST00000379663		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
intron-3UTR	ENST00000335367	ENST00000512454		TCGA	RV	SARC	TCGA-DX-A8BR-01A	AGAP3	chr7	150784159	+	EXOSC9	chr4	122722982	+
5CDS-5UTR	ENST00000393561	ENST00000468410		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000393561	ENST00000222574		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000393561	ENST00000485846		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-intron	ENST00000393561	ENST00000461963		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000222399	ENST00000468410		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000222399	ENST00000222574		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000222399	ENST00000485846		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-intron	ENST00000222399	ENST00000461963		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000393560	ENST00000468410		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000393560	ENST00000222574		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-5UTR	ENST00000393560	ENST00000485846		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5CDS-intron	ENST00000393560	ENST00000461963		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
intron-5UTR	ENST00000474380	ENST00000468410		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
intron-5UTR	ENST00000474380	ENST00000222574		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
intron-5UTR	ENST00000474380	ENST00000485846		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
intron-intron	ENST00000474380	ENST00000461963		TCGA	RV	SARC	TCGA-SI-A71Q-01A	LAMB1	chr7	107601651	-	HBP1	chr7	106820324	+
5UTR-intron	ENST00000250559	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000250559	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000393436	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000393436	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000341355	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000341355	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000537460	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000537460	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000463493	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000463493	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000450214	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000450214	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000543393	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000543393	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000378985	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000378985	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000540209	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000540209	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000539091	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000539091	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000542145	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000542145	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000543697	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000543697	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000541216	ENST00000550067		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000541216	ENST00000360820		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004823	+	SCYL2	chr12	100711581	+
In-frame	ENST00000307179	ENST00000267970		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000307179	ENST00000346495		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000307179	ENST00000424443		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000307179	ENST00000561277		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000307179	ENST00000559494		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000307179	ENST00000558745		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000307179	ENST00000558394		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000433963	ENST00000267970		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000433963	ENST00000346495		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000433963	ENST00000424443		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000433963	ENST00000561277		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000433963	ENST00000559494		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000433963	ENST00000558745		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000433963	ENST00000558394		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000396444	ENST00000267970		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000396444	ENST00000346495		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000396444	ENST00000424443		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000396444	ENST00000561277		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000396444	ENST00000559494		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000396444	ENST00000558745		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000396444	ENST00000558394		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000425032	ENST00000267970		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
In-frame	ENST00000425032	ENST00000346495		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000425032	ENST00000424443		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000425032	ENST00000561277		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000425032	ENST00000559494		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000425032	ENST00000558745		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000425032	ENST00000558394		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000558892	ENST00000267970		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000558892	ENST00000346495		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-intron	ENST00000558892	ENST00000424443		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000558892	ENST00000561277		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-intron	ENST00000558892	ENST00000559494		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000558892	ENST00000558745		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000558892	ENST00000558394		TCGA	RV	SARC	TCGA-DX-A6YZ-01A	USP8	chr15	50763992	+	TSPAN3	chr15	77348597	-
5UTR-3CDS	ENST00000299293	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
5UTR-3CDS	ENST00000299293	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
5UTR-3CDS	ENST00000549921	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
5UTR-3CDS	ENST00000549921	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
5UTR-3CDS	ENST00000550389	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
5UTR-3CDS	ENST00000550389	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
intron-3CDS	ENST00000397997	ENST00000367669		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
intron-3CDS	ENST00000397997	ENST00000308769		TCGA	RV	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69864310	+	RFWD2	chr1	175996824	-
In-frame	ENST00000344204	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
Frame-shit	ENST00000344204	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000344204	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000344204	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000344204	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
Frame-shit	ENST00000537187	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
In-frame	ENST00000537187	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
5CDS-intron	ENST00000537187	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000509967	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-intron	ENST00000509967	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000515710	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-intron	ENST00000515710	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000310581		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000296820		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000334602		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-3CDS	ENST00000344135	ENST00000508104		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
intron-intron	ENST00000344135	ENST00000522877		TCGA	RV	SARC	TCGA-DX-A1L3-01A	TRIO	chr5	14420130	+	TERT	chr5	1282739	-
Frame-shit	ENST00000371227	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371227	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000371249	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371249	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000306402	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000306402	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000353505	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000353505	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000371246	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371246	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000347291	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000347291	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000393949	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000393949	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000371247	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371247	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
Frame-shit	ENST00000607232	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000607232	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
In-frame	ENST00000371245	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371245	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
In-frame	ENST00000361941	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000361941	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
In-frame	ENST00000277982	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000277982	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
In-frame	ENST00000354106	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000354106	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
In-frame	ENST00000371239	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371239	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
In-frame	ENST00000371241	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-intron	ENST00000371241	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5UTR-3CDS	ENST00000474353	ENST00000395297		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5UTR-intron	ENST00000474353	ENST00000520283		TCGA	RV	SARC	TCGA-3B-A9HY-01A	SORBS1	chr10	97106163	-	FAM135B	chr8	139255311	-
5CDS-5UTR	ENST00000354817	ENST00000312275		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
5CDS-intron	ENST00000354817	ENST00000498159		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000354817	ENST00000468043		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000354817	ENST00000459838		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000354817	ENST00000461040		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000354817	ENST00000449199		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
5CDS-5UTR	ENST00000354817	ENST00000426338		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000527202	ENST00000312275		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-intron	ENST00000527202	ENST00000498159		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000527202	ENST00000468043		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000527202	ENST00000459838		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000527202	ENST00000461040		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000527202	ENST00000449199		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000527202	ENST00000426338		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000532502	ENST00000312275		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-intron	ENST00000532502	ENST00000498159		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000532502	ENST00000468043		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000532502	ENST00000459838		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000532502	ENST00000461040		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000532502	ENST00000449199		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
intron-5UTR	ENST00000532502	ENST00000426338		TCGA	RV	SARC	TCGA-DX-A3LT-01A	FAR1	chr11	13722039	+	C3orf55	chr3	157271019	+
In-frame	ENST00000427025	ENST00000251691		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	NHSL1	chr6	138817356	-	KIAA1244	chr6	138491799	+
In-frame	ENST00000343505	ENST00000251691		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	NHSL1	chr6	138817356	-	KIAA1244	chr6	138491799	+
5UTR-3CDS	ENST00000479393	ENST00000251691		TCGA	RV	SARC	TCGA-IF-A3RQ-01A	NHSL1	chr6	138817356	-	KIAA1244	chr6	138491799	+
In-frame	ENST00000346234	ENST00000358026		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000344626		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000429416		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000541122		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000589677		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000444061		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000590574		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000413806		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000346234	ENST00000450717		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
5CDS-intron	ENST00000346234	ENST00000538456		TCGA	RV	SARC	TCGA-DX-A48N-01A	OSTF1	chr9	77703642	+	SMARCA4	chr19	11141406	+
In-frame	ENST00000343702	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000343702	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000343702	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000343702	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000344911	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000344911	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000344911	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000344911	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000538383	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000538383	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000538383	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000538383	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000553059	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000553059	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
In-frame	ENST00000553059	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000553059	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000552603	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000552603	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000552603	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
5UTR-intron	ENST00000552603	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NTN4	chr12	96131644	-	NUP107	chr12	69135593	+
intron-3CDS	ENST00000455697	ENST00000379141		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000455697	ENST00000320743		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000445766	ENST00000379141		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000445766	ENST00000320743		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000548696	ENST00000379141		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000548696	ENST00000320743		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000345127	ENST00000379141		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000345127	ENST00000320743		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000552240	ENST00000379141		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000552240	ENST00000320743		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000552200	ENST00000379141		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000552200	ENST00000320743		TCGA	RV	SARC	TCGA-DX-A7EI-01A	PRICKLE1	chr12	42983267	-	LRIG3	chr12	59284578	-
In-frame	ENST00000550735	ENST00000344280		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
5CDS-intron	ENST00000550735	ENST00000549752		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
5CDS-intron	ENST00000550735	ENST00000546386		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
In-frame	ENST00000551404	ENST00000344280		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
5CDS-intron	ENST00000551404	ENST00000549752		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
5CDS-intron	ENST00000551404	ENST00000546386		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
In-frame	ENST00000547305	ENST00000344280		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
5CDS-intron	ENST00000547305	ENST00000549752		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
5CDS-intron	ENST00000547305	ENST00000546386		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
3UTR-3CDS	ENST00000546394	ENST00000344280		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
3UTR-intron	ENST00000546394	ENST00000549752		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
3UTR-intron	ENST00000546394	ENST00000546386		TCGA	RV	SARC	TCGA-3B-A9HO-01A	MAPKAPK5	chr12	112280573	+	CCDC38	chr12	96266238	-
In-frame	ENST00000599802	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000599802	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5UTR-3CDS	ENST00000391702	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5UTR-3UTR	ENST00000391702	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
In-frame	ENST00000598885	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000598885	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
In-frame	ENST00000598183	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000598183	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
In-frame	ENST00000396154	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000396154	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
In-frame	ENST00000396150	ENST00000225402		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
5CDS-3UTR	ENST00000396150	ENST00000590321		TCGA	RV	SARC	TCGA-DX-A8BM-01A	ZNF586	chr19	58281246	+	AATF	chr17	35413901	+
Frame-shit	ENST00000378743	ENST00000280379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000378743	ENST00000393632		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000378743	ENST00000393630		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000378743	ENST00000546600		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000378743	ENST00000552738		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000378743	ENST00000393629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000378743	ENST00000552115		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000378743	ENST00000549378		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000378743	ENST00000551397		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-3CDS	ENST00000548100	ENST00000280379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-3CDS	ENST00000548100	ENST00000393632		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-3CDS	ENST00000548100	ENST00000393630		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-3CDS	ENST00000548100	ENST00000546600		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-3CDS	ENST00000548100	ENST00000552738		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-3CDS	ENST00000548100	ENST00000393629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-intron	ENST00000548100	ENST00000552115		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-intron	ENST00000548100	ENST00000549378		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
intron-intron	ENST00000548100	ENST00000551397		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000552037	ENST00000280379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000552037	ENST00000393632		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000552037	ENST00000393630		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000552037	ENST00000546600		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000552037	ENST00000552738		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000552037	ENST00000393629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000552037	ENST00000552115		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000552037	ENST00000549378		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000552037	ENST00000551397		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
In-frame	ENST00000549407	ENST00000280379		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
In-frame	ENST00000549407	ENST00000393632		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
In-frame	ENST00000549407	ENST00000393630		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
In-frame	ENST00000549407	ENST00000546600		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
In-frame	ENST00000549407	ENST00000552738		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
In-frame	ENST00000549407	ENST00000393629		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000549407	ENST00000552115		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000549407	ENST00000549378		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
5CDS-intron	ENST00000549407	ENST00000551397		TCGA	RV	SARC	TCGA-DX-A1L0-01A	ZFC3H1	chr12	72050665	-	MON2	chr12	62972225	+
Frame-shit	ENST00000224784	ENST00000361866		TCGA	RV	SARC	TCGA-DX-A7EM-01A	ACTA2	chr10	90694833	-	COL6A1	chr21	47407069	+
5CDS-intron	ENST00000224784	ENST00000498614		TCGA	RV	SARC	TCGA-DX-A7EM-01A	ACTA2	chr10	90694833	-	COL6A1	chr21	47407069	+
In-frame	ENST00000458208	ENST00000361866		TCGA	RV	SARC	TCGA-DX-A7EM-01A	ACTA2	chr10	90694833	-	COL6A1	chr21	47407069	+
5CDS-intron	ENST00000458208	ENST00000498614		TCGA	RV	SARC	TCGA-DX-A7EM-01A	ACTA2	chr10	90694833	-	COL6A1	chr21	47407069	+
intron-3CDS	ENST00000480297	ENST00000361866		TCGA	RV	SARC	TCGA-DX-A7EM-01A	ACTA2	chr10	90694833	-	COL6A1	chr21	47407069	+
intron-intron	ENST00000480297	ENST00000498614		TCGA	RV	SARC	TCGA-DX-A7EM-01A	ACTA2	chr10	90694833	-	COL6A1	chr21	47407069	+
In-frame	ENST00000266754	ENST00000552285		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000266754	ENST00000315970		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000266754	ENST00000439210		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000266754	ENST00000389146		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000266754	ENST00000413095		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000266754	ENST00000551035		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000266754	ENST00000435406		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000266754	ENST00000257966		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000266754	ENST00000389142		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000547754	ENST00000552285		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000547754	ENST00000315970		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000547754	ENST00000439210		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000547754	ENST00000389146		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547754	ENST00000413095		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547754	ENST00000551035		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547754	ENST00000435406		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547754	ENST00000257966		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547754	ENST00000389142		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547739	ENST00000552285		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547739	ENST00000315970		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547739	ENST00000439210		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000547739	ENST00000389146		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-intron	ENST00000547739	ENST00000413095		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-intron	ENST00000547739	ENST00000551035		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-intron	ENST00000547739	ENST00000435406		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-intron	ENST00000547739	ENST00000257966		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-intron	ENST00000547739	ENST00000389142		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000539410	ENST00000552285		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000539410	ENST00000315970		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000539410	ENST00000439210		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
In-frame	ENST00000539410	ENST00000389146		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000539410	ENST00000413095		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000539410	ENST00000551035		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000539410	ENST00000435406		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000539410	ENST00000257966		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000539410	ENST00000389142		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000537247	ENST00000552285		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000537247	ENST00000315970		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000537247	ENST00000439210		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000537247	ENST00000389146		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000537247	ENST00000413095		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000537247	ENST00000551035		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000537247	ENST00000435406		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000537247	ENST00000257966		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
5UTR-intron	ENST00000537247	ENST00000389142		TCGA	RV	SARC	TCGA-DX-A1L4-01A	GAS2L3	chr12	100995531	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A23V-01A	TSPAN31	chr12	58140914	+	WIF1	chr12	65471634	-
In-frame	ENST00000257910	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A23V-01A	TSPAN31	chr12	58140914	+	WIF1	chr12	65471634	-
In-frame	ENST00000547992	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A23V-01A	TSPAN31	chr12	58140914	+	WIF1	chr12	65471634	-
In-frame	ENST00000547472	ENST00000286574		TCGA	RV	SARC	TCGA-DX-A23V-01A	TSPAN31	chr12	58140914	+	WIF1	chr12	65471634	-
5UTR-3CDS	ENST00000299293	ENST00000331710		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	TBK1	chr12	64860681	+
5UTR-3CDS	ENST00000549921	ENST00000331710		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	TBK1	chr12	64860681	+
5UTR-3CDS	ENST00000550389	ENST00000331710		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	TBK1	chr12	64860681	+
intron-3CDS	ENST00000397997	ENST00000331710		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	TBK1	chr12	64860681	+
5CDS-3UTR	ENST00000415822	ENST00000486975		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000415822	ENST00000451576		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000415822	ENST00000064724		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000415822	ENST00000489485		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-3UTR	ENST00000392813	ENST00000486975		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000392813	ENST00000451576		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000392813	ENST00000064724		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000392813	ENST00000489485		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-3UTR	ENST00000264266	ENST00000486975		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000264266	ENST00000451576		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000264266	ENST00000064724		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
5CDS-intron	ENST00000264266	ENST00000489485		TCGA	RV	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170577772	+
intron-3CDS	ENST00000413953	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000413953	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000413953	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000413953	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000413953	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000413953	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000347140	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000347140	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000347140	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000347140	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000347140	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-5UTR	ENST00000347140	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000358907	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000358907	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000358907	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000358907	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000358907	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000358907	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000402412	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000402412	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000402412	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000402412	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000402412	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
5UTR-5UTR	ENST00000402412	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000441731	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000441731	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000441731	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000441731	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000441731	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000441731	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000403821	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000403821	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000403821	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000403821	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000403821	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000403821	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000546843	ENST00000361961		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000546843	ENST00000395670		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000546843	ENST00000544797		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000546843	ENST00000361418		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000546843	ENST00000541463		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000546843	ENST00000547745		TCGA	RV	SARC	TCGA-DX-AB2H-01A	R3HDM2	chr12	57789532	-	KIF21A	chr12	39705355	-
Frame-shit	ENST00000354725	ENST00000405709		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000354725	ENST00000331762		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000354725	ENST00000452895		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000354725	ENST00000415362		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000354725	ENST00000447215		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000354725	ENST00000437687		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000354725	ENST00000489381		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000354725	ENST00000450877		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000405709		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000331762		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000452895		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000415362		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000467238	ENST00000447215		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000467238	ENST00000437687		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000467238	ENST00000489381		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000467238	ENST00000450877		TCGA	RV	SARC	TCGA-FX-A3RE-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000320876	ENST00000261597		TCGA	RV	SARC	TCGA-IF-A4AJ-01A	SMCHD1	chr18	2732490	+	NDC80	chr18	2599018	+
In-frame	ENST00000261598	ENST00000261597		TCGA	RV	SARC	TCGA-IF-A4AJ-01A	SMCHD1	chr18	2732490	+	NDC80	chr18	2599018	+
intron-3CDS	ENST00000609587	ENST00000261597		TCGA	RV	SARC	TCGA-IF-A4AJ-01A	SMCHD1	chr18	2732490	+	NDC80	chr18	2599018	+
In-frame	ENST00000307404	ENST00000417640		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
5CDS-3UTR	ENST00000307404	ENST00000521954		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000307404	ENST00000522820		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000307404	ENST00000521366		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
Frame-shit	ENST00000529231	ENST00000417640		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
5CDS-3UTR	ENST00000529231	ENST00000521954		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000529231	ENST00000522820		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
5CDS-intron	ENST00000529231	ENST00000521366		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
intron-3CDS	ENST00000525016	ENST00000417640		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
intron-3UTR	ENST00000525016	ENST00000521954		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000525016	ENST00000522820		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
intron-intron	ENST00000525016	ENST00000521366		TCGA	RV	SARC	TCGA-DX-A6YX-01A	BOP1	chr8	145500212	-	NECAB1	chr8	91813919	+
3UTR-intron	ENST00000331595	ENST00000371754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000331595	ENST00000469991		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000331595	ENST00000371752		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000331595	ENST00000396105		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000480756	ENST00000371754		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000480756	ENST00000469991		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000480756	ENST00000371752		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000480756	ENST00000396105		TCGA	RV	SARC	TCGA-PC-A5DN-01A	BGN	chrX	152775004	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000313070	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
5CDS-3UTR	ENST00000313070	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
In-frame	ENST00000334010	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
5CDS-3UTR	ENST00000334010	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
In-frame	ENST00000412584	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
5CDS-3UTR	ENST00000412584	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
In-frame	ENST00000449022	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
5CDS-3UTR	ENST00000449022	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
intron-3CDS	ENST00000476131	ENST00000300145		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
intron-3UTR	ENST00000476131	ENST00000546709		TCGA	RV	SARC	TCGA-DX-A6BH-01A	CADPS2	chr7	122526053	-	XRCC6BP1	chr12	58345541	+
Frame-shit	ENST00000258111	ENST00000550916		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000258111	ENST00000378689		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000258111	ENST00000435775		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000258111	ENST00000378692		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000258111	ENST00000320460		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000258111	ENST00000547164		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000258111	ENST00000441218		TCGA	RV	SARC	TCGA-PC-A5DN-01A	KCNMB4	chr12	70760850	+	GLIPR1L2	chr12	75816684	+
5CDS-5UTR	ENST00000263354	ENST00000476971		TCGA	RV	SARC	TCGA-IE-A4EH-01A	NAPA	chr19	48018100	-	PLAC1	chrX	133700770	-
5CDS-5UTR	ENST00000263354	ENST00000359237		TCGA	RV	SARC	TCGA-IE-A4EH-01A	NAPA	chr19	48018100	-	PLAC1	chrX	133700770	-
5CDS-5UTR	ENST00000595227	ENST00000476971		TCGA	RV	SARC	TCGA-IE-A4EH-01A	NAPA	chr19	48018100	-	PLAC1	chrX	133700770	-
5CDS-5UTR	ENST00000595227	ENST00000359237		TCGA	RV	SARC	TCGA-IE-A4EH-01A	NAPA	chr19	48018100	-	PLAC1	chrX	133700770	-
5UTR-5UTR	ENST00000593785	ENST00000476971		TCGA	RV	SARC	TCGA-IE-A4EH-01A	NAPA	chr19	48018100	-	PLAC1	chrX	133700770	-
5UTR-5UTR	ENST00000593785	ENST00000359237		TCGA	RV	SARC	TCGA-IE-A4EH-01A	NAPA	chr19	48018100	-	PLAC1	chrX	133700770	-
In-frame	ENST00000258947	ENST00000431639		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000258947	ENST00000316024		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000258947	ENST00000457584		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000258947	ENST00000396463		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000258947	ENST00000534050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000509507	ENST00000431639		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000509507	ENST00000316024		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000509507	ENST00000457584		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000509507	ENST00000396463		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000509507	ENST00000534050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000448105	ENST00000431639		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000448105	ENST00000316024		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000448105	ENST00000457584		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000448105	ENST00000396463		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000448105	ENST00000534050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000416445	ENST00000431639		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000416445	ENST00000316024		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000416445	ENST00000457584		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000416445	ENST00000396463		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000416445	ENST00000534050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000508679	ENST00000431639		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000508679	ENST00000316024		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000508679	ENST00000457584		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000508679	ENST00000396463		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
In-frame	ENST00000508679	ENST00000534050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000510997	ENST00000431639		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000510997	ENST00000316024		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000510997	ENST00000457584		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000510997	ENST00000396463		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000510997	ENST00000534050		TCGA	RV	SARC	TCGA-WK-A8XS-01A	CALCOCO2	chr17	46933549	+	WRAP53	chr17	7604059	+
intron-3CDS	ENST00000535044	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-3CDS	ENST00000535044	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-3CDS	ENST00000535044	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-intron	ENST00000535044	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-3CDS	ENST00000539696	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-3CDS	ENST00000539696	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-3CDS	ENST00000539696	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
intron-intron	ENST00000539696	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
Frame-shit	ENST00000228510	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000228510	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000228510	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
5CDS-intron	ENST00000228510	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
Frame-shit	ENST00000392727	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000392727	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000392727	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
5CDS-intron	ENST00000392727	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
Frame-shit	ENST00000539575	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000539575	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000539575	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
5CDS-intron	ENST00000539575	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
Frame-shit	ENST00000541384	ENST00000546373		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000541384	ENST00000551568		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
In-frame	ENST00000541384	ENST00000338356		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
5CDS-intron	ENST00000541384	ENST00000549691		TCGA	RV	SARC	TCGA-DX-AB36-01A	MVK	chr12	110023930	+	CPM	chr12	69250459	-
5UTR-3UTR	ENST00000428443	ENST00000474476		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
5UTR-3UTR	ENST00000428443	ENST00000371218		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
5UTR-3UTR	ENST00000428443	ENST00000303721		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
5UTR-3UTR	ENST00000428443	ENST00000371212		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
5UTR-3UTR	ENST00000428443	ENST00000371210		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
intron-3UTR	ENST00000486468	ENST00000474476		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
intron-3UTR	ENST00000486468	ENST00000371218		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
intron-3UTR	ENST00000486468	ENST00000303721		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
intron-3UTR	ENST00000486468	ENST00000371212		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
intron-3UTR	ENST00000486468	ENST00000371210		TCGA	RV	SARC	TCGA-DX-AB2O-01A	SESTD1	chr2	180129226	-	FGGY	chr1	60073475	+
Frame-shit	ENST00000327443	ENST00000609999		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	NPFF	chr12	53900926	-
Frame-shit	ENST00000327443	ENST00000267017		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	NPFF	chr12	53900926	-
Frame-shit	ENST00000426431	ENST00000609999		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	NPFF	chr12	53900926	-
Frame-shit	ENST00000426431	ENST00000267017		TCGA	RV	SARC	TCGA-DX-AB2G-01A	SP1	chr12	53777406	+	NPFF	chr12	53900926	-
intron-3CDS	ENST00000392668	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000392668	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000392668	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000392668	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000525404	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000525404	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000525404	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000525404	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000345075	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000345075	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000345075	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000345075	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000535549	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000535549	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000535549	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000535549	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000526145	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000526145	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000526145	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000526145	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000531611	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000531611	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000531611	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000531611	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
Frame-shit	ENST00000319397	ENST00000523111		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000319397	ENST00000521346		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000319397	ENST00000517630		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000319397	ENST00000520809		TCGA	RV	SARC	TCGA-FX-A2QS-01A	ETS1	chr11	128391808	-	UBE2V2	chr8	48955593	+
5UTR-3CDS	ENST00000382592	ENST00000360772		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-3CDS	ENST00000382592	ENST00000359169		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-3CDS	ENST00000382592	ENST00000360304		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000418370		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000578202		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000354792		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000346322		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000583087		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-intron	ENST00000382592	ENST00000475616		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
5UTR-5UTR	ENST00000382592	ENST00000510775		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000542899	ENST00000360772		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000542899	ENST00000359169		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000542899	ENST00000360304		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000418370		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000578202		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000354792		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000346322		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000583087		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000542899	ENST00000475616		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-5UTR	ENST00000542899	ENST00000510775		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000472754	ENST00000360772		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000472754	ENST00000359169		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000472754	ENST00000360304		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000418370		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000578202		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000354792		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000346322		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000583087		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-intron	ENST00000472754	ENST00000475616		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-5UTR	ENST00000472754	ENST00000510775		TCGA	RV	SARC	TCGA-K1-A42X-01A	LATS2	chr13	21635485	-	MYLK	chr3	123386034	-
intron-3CDS	ENST00000553277	ENST00000416284		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553277	ENST00000551619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553277	ENST00000550003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553277	ENST00000551449		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-intron	ENST00000553277	ENST00000549456		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
Frame-shit	ENST00000243077	ENST00000416284		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
Frame-shit	ENST00000243077	ENST00000551619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
In-frame	ENST00000243077	ENST00000550003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
Frame-shit	ENST00000243077	ENST00000551449		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
5CDS-intron	ENST00000243077	ENST00000549456		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000338962	ENST00000416284		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000338962	ENST00000551619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000338962	ENST00000550003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000338962	ENST00000551449		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-intron	ENST00000338962	ENST00000549456		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000554174	ENST00000416284		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000554174	ENST00000551619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000554174	ENST00000550003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000554174	ENST00000551449		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-intron	ENST00000554174	ENST00000549456		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553446	ENST00000416284		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553446	ENST00000551619		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553446	ENST00000550003		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-3CDS	ENST00000553446	ENST00000551449		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
intron-intron	ENST00000553446	ENST00000549456		TCGA	RV	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569488	+	FAM19A2	chr12	62104198	-
Frame-shit	ENST00000266742	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000266742	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000266742	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000429527	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000429527	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000429527	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000555114	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000555114	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000555114	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000411739	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000411739	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000411739	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000557644	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000557644	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000557644	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000457368	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000457368	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000457368	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A3M1-01A	NEDD1	chr12	97331171	+	TMTC2	chr12	83358803	+
5CDS-5UTR	ENST00000262971	ENST00000270459		TCGA	RV	SARC	TCGA-3B-A9HX-01A	PIAS4	chr19	4033578	+	ZNF787	chr19	56614596	-
5CDS-5UTR	ENST00000262971	ENST00000587279		TCGA	RV	SARC	TCGA-3B-A9HX-01A	PIAS4	chr19	4033578	+	ZNF787	chr19	56614596	-
intron-5UTR	ENST00000596144	ENST00000270459		TCGA	RV	SARC	TCGA-3B-A9HX-01A	PIAS4	chr19	4033578	+	ZNF787	chr19	56614596	-
intron-5UTR	ENST00000596144	ENST00000587279		TCGA	RV	SARC	TCGA-3B-A9HX-01A	PIAS4	chr19	4033578	+	ZNF787	chr19	56614596	-
Frame-shit	ENST00000392872	ENST00000261211		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
Frame-shit	ENST00000392872	ENST00000543119		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
Frame-shit	ENST00000392872	ENST00000542666		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5CDS-5UTR	ENST00000392872	ENST00000553042		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-3CDS	ENST00000266775	ENST00000261211		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-3CDS	ENST00000266775	ENST00000543119		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-3CDS	ENST00000266775	ENST00000542666		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-5UTR	ENST00000266775	ENST00000553042		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-3CDS	ENST00000544861	ENST00000261211		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-3CDS	ENST00000544861	ENST00000543119		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-3CDS	ENST00000544861	ENST00000542666		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
5UTR-5UTR	ENST00000544861	ENST00000553042		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-3CDS	ENST00000542036	ENST00000261211		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-3CDS	ENST00000542036	ENST00000543119		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-3CDS	ENST00000542036	ENST00000542666		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-5UTR	ENST00000542036	ENST00000553042		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-3CDS	ENST00000536395	ENST00000261211		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-3CDS	ENST00000536395	ENST00000543119		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-3CDS	ENST00000536395	ENST00000542666		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
intron-5UTR	ENST00000536395	ENST00000553042		TCGA	RV	SARC	TCGA-3B-A9HL-01A	TDG	chr12	104359838	+	CDK17	chr12	96683065	-
In-frame	ENST00000377194	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
In-frame	ENST00000377194	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377194	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377194	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377194	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377194	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
In-frame	ENST00000377199	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
In-frame	ENST00000377199	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377199	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377199	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377199	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
5CDS-5UTR	ENST00000377199	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000498117	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000498117	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000498117	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000498117	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000498117	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000498117	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000459807	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000459807	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000459807	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000459807	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000459807	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000459807	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000412687	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000412687	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000412687	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000412687	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000412687	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000412687	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000437160	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000437160	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437160	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437160	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437160	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437160	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000427689	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000427689	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000427689	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000427689	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000427689	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000427689	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000435528	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000435528	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000435528	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000435528	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000435528	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000435528	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000485666	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000485666	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000485666	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000485666	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000485666	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000485666	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000468364	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000468364	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468364	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468364	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468364	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468364	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000455861	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000455861	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000455861	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000455861	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000455861	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000455861	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000417660	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000417660	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000417660	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000417660	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000417660	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000417660	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000400720	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000400720	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000400720	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000400720	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000400720	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000400720	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000495323	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000495323	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000495323	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000495323	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000495323	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000495323	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000491158	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000491158	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000491158	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000491158	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000491158	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000491158	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000437415	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000437415	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437415	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437415	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437415	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000437415	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000468047	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000468047	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468047	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468047	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468047	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000468047	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000431123	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000431123	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000431123	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000431123	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000431123	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000431123	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000452265	ENST00000283228		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000452265	ENST00000440835		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000452265	ENST00000537619		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000452265	ENST00000378778		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000452265	ENST00000342084		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-5UTR	ENST00000452265	ENST00000549308		TCGA	RV	SARC	TCGA-DX-A23Z-01A	TRIM27	chr6	28879473	-	PTPRR	chr12	71050597	-
intron-3CDS	ENST00000383737	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000383737	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000383737	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000383737	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000383737	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000383737	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000383737	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000395734	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000395734	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000395734	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000395734	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000395734	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000395734	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000395734	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000426837	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000426837	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000426837	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000426837	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000426837	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000426837	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000426837	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000360240	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000360240	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
Frame-shit	ENST00000360240	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000360240	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000360240	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000360240	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
5CDS-intron	ENST00000360240	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000439356	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000439356	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000439356	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000439356	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000439356	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000439356	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000439356	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000264724	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000264724	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000264724	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000264724	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000264724	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000264724	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000264724	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000420772	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000420772	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000420772	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000420772	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000420772	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000420772	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000420772	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000441748	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000441748	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000441748	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000441748	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000441748	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000441748	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000441748	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000462206	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000462206	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000462206	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000462206	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000462206	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000462206	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000462206	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000434267	ENST00000588161		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000434267	ENST00000262633		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-3CDS	ENST00000434267	ENST00000592202		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000434267	ENST00000586618		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000434267	ENST00000589559		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000434267	ENST00000360475		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
intron-intron	ENST00000434267	ENST00000589871		TCGA	RV	SARC	TCGA-DX-A8BL-01A	MAP4	chr3	47956307	-	RBM42	chr19	36124000	+
In-frame	ENST00000341653	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000341653	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000341653	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000341653	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000341653	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000341653	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000358402	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000358402	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000358402	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000358402	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000358402	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000358402	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000555932	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000555932	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000555932	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000555932	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000555932	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-intron	ENST00000555932	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000284165	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000284165	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000284165	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000284165	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000284165	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000284165	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000358664	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000358664	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000358664	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000358664	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000358664	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000358664	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000555419	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000555419	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000555419	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000555419	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000555419	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-intron	ENST00000555419	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5UTR-3CDS	ENST00000557277	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5UTR-3CDS	ENST00000557277	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5UTR-3CDS	ENST00000557277	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5UTR-5UTR	ENST00000557277	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5UTR-5UTR	ENST00000557277	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5UTR-intron	ENST00000557277	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000556979	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000556979	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000556979	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000556979	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000556979	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000556979	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000555667	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000555667	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000555667	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000555667	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000555667	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000555667	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000557746	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000557746	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000557746	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000557746	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000557746	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000557746	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000556443	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000556443	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000556443	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000556443	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000556443	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000556443	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000246163	ENST00000193403		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000246163	ENST00000394419		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
In-frame	ENST00000246163	ENST00000438964		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000246163	ENST00000376839		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-5UTR	ENST00000246163	ENST00000538545		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
5CDS-intron	ENST00000246163	ENST00000554508		TCGA	RV	SARC	TCGA-DX-AB2V-01A	MAX	chr14	65560426	-	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000607252	ENST00000359314		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZNF318	chr6	43336705	-	CD2AP	chr6	47548600	+
intron-intron	ENST00000607252	ENST00000486693		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZNF318	chr6	43336705	-	CD2AP	chr6	47548600	+
In-frame	ENST00000318149	ENST00000359314		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZNF318	chr6	43336705	-	CD2AP	chr6	47548600	+
5CDS-intron	ENST00000318149	ENST00000486693		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZNF318	chr6	43336705	-	CD2AP	chr6	47548600	+
In-frame	ENST00000361428	ENST00000359314		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZNF318	chr6	43336705	-	CD2AP	chr6	47548600	+
5CDS-intron	ENST00000361428	ENST00000486693		TCGA	RV	SARC	TCGA-DX-A3LU-01A	ZNF318	chr6	43336705	-	CD2AP	chr6	47548600	+
intron-3CDS	ENST00000593786	ENST00000311351		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
intron-3CDS	ENST00000593786	ENST00000520755		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
intron-5UTR	ENST00000593786	ENST00000522515		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000374796	ENST00000311351		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000374796	ENST00000520755		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000374796	ENST00000522515		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000359003	ENST00000311351		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
Frame-shit	ENST00000359003	ENST00000520755		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
5CDS-5UTR	ENST00000359003	ENST00000522515		TCGA	RV	SARC	TCGA-DX-A3LS-01A	NCOA6	chr20	33356267	-	LSM1	chr8	38029551	-
5UTR-3CDS	ENST00000482518	ENST00000399312		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
5UTR-3UTR	ENST00000482518	ENST00000482679		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
Frame-shit	ENST00000392054	ENST00000399312		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000392054	ENST00000482679		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
intron-3CDS	ENST00000409462	ENST00000399312		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
intron-3UTR	ENST00000409462	ENST00000482679		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
In-frame	ENST00000392055	ENST00000399312		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000392055	ENST00000482679		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
In-frame	ENST00000354069	ENST00000399312		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
5CDS-3UTR	ENST00000354069	ENST00000482679		TCGA	RV	SARC	TCGA-DX-A3U7-01A	PID1	chr2	230020534	-	MRPS6	chr21	35497641	+
In-frame	ENST00000590798	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000590798	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000590798	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000590798	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000590798	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000538752	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000538752	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000538752	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000538752	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000538752	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000591944	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000591944	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000591944	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000591944	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000591944	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000592625	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000592625	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000592625	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000592625	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000592625	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000545530	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000545530	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000545530	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000545530	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000545530	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000343949	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000343949	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000343949	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000343949	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000343949	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000358987	ENST00000541222		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000358987	ENST00000316856		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000358987	ENST00000586534		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000358987	ENST00000592268		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000358987	ENST00000588826		TCGA	RV	SARC	TCGA-HS-A5N9-01A	ZNF763	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000548058	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000548058	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000548058	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000548058	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000548058	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000261206	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000261206	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000261206	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000261206	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
5CDS-intron	ENST00000261206	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000548324	ENST00000522695		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000548324	ENST00000524300		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000548324	ENST00000523558		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-3CDS	ENST00000548324	ENST00000521210		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000355780		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000519961		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000521727		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000521451		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000522509		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000517542		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000524104		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000522962		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
intron-intron	ENST00000548324	ENST00000521419		TCGA	RV	SARC	TCGA-DX-A7EI-01A	ACSS3	chr12	81537026	+	STAU2	chr8	74334937	-
In-frame	ENST00000331710	ENST00000539652		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000331710	ENST00000556010		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000331710	ENST00000358230		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000331710	ENST00000544599		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000331710	ENST00000286424		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
5CDS-5UTR	ENST00000331710	ENST00000398033		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000331710	ENST00000542724		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
5CDS-intron	ENST00000331710	ENST00000535812		TCGA	RV	SARC	TCGA-DX-AB35-01A	TBK1	chr12	64849737	+	TMBIM4	chr12	66547228	-
In-frame	ENST00000504595	ENST00000354831		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
In-frame	ENST00000504595	ENST00000352171		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5CDS-5UTR	ENST00000504595	ENST00000485608		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5CDS-5UTR	ENST00000504595	ENST00000539524		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5CDS-5UTR	ENST00000504595	ENST00000544028		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5UTR-3CDS	ENST00000510662	ENST00000354831		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5UTR-3CDS	ENST00000510662	ENST00000352171		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5UTR-5UTR	ENST00000510662	ENST00000485608		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5UTR-5UTR	ENST00000510662	ENST00000539524		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5UTR-5UTR	ENST00000510662	ENST00000544028		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
In-frame	ENST00000329673	ENST00000354831		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
In-frame	ENST00000329673	ENST00000352171		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5CDS-5UTR	ENST00000329673	ENST00000485608		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5CDS-5UTR	ENST00000329673	ENST00000539524		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5CDS-5UTR	ENST00000329673	ENST00000544028		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	FBXL7	chr5	15616181	+	NRD1	chr1	52299842	-
5UTR-5UTR	ENST00000393240	ENST00000261172		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SYT1	chr12	79441142	+	EPYC	chr12	91396355	-
5UTR-5UTR	ENST00000261205	ENST00000261172		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SYT1	chr12	79441142	+	EPYC	chr12	91396355	-
intron-5UTR	ENST00000457153	ENST00000261172		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SYT1	chr12	79441142	+	EPYC	chr12	91396355	-
5UTR-5UTR	ENST00000552744	ENST00000261172		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SYT1	chr12	79441142	+	EPYC	chr12	91396355	-
3UTR-5UTR	ENST00000549454	ENST00000261172		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	SYT1	chr12	79441142	+	EPYC	chr12	91396355	-
5CDS-intron	ENST00000299300	ENST00000549100		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CCT2	chr12	69987393	+	DEPDC4	chr12	100646314	-
5CDS-intron	ENST00000299300	ENST00000416321		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CCT2	chr12	69987393	+	DEPDC4	chr12	100646314	-
5CDS-intron	ENST00000544368	ENST00000549100		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CCT2	chr12	69987393	+	DEPDC4	chr12	100646314	-
5CDS-intron	ENST00000544368	ENST00000416321		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CCT2	chr12	69987393	+	DEPDC4	chr12	100646314	-
5CDS-intron	ENST00000543146	ENST00000549100		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CCT2	chr12	69987393	+	DEPDC4	chr12	100646314	-
5CDS-intron	ENST00000543146	ENST00000416321		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CCT2	chr12	69987393	+	DEPDC4	chr12	100646314	-
Frame-shit	ENST00000496112	ENST00000360876		TCGA	RV	SARC	TCGA-SG-A849-01A	YKT6	chr7	44240838	+	EIF3B	chr7	2419029	+
Frame-shit	ENST00000496112	ENST00000397011		TCGA	RV	SARC	TCGA-SG-A849-01A	YKT6	chr7	44240838	+	EIF3B	chr7	2419029	+
3UTR-3CDS	ENST00000447123	ENST00000360876		TCGA	RV	SARC	TCGA-SG-A849-01A	YKT6	chr7	44240838	+	EIF3B	chr7	2419029	+
3UTR-3CDS	ENST00000447123	ENST00000397011		TCGA	RV	SARC	TCGA-SG-A849-01A	YKT6	chr7	44240838	+	EIF3B	chr7	2419029	+
Frame-shit	ENST00000223369	ENST00000360876		TCGA	RV	SARC	TCGA-SG-A849-01A	YKT6	chr7	44240838	+	EIF3B	chr7	2419029	+
Frame-shit	ENST00000223369	ENST00000397011		TCGA	RV	SARC	TCGA-SG-A849-01A	YKT6	chr7	44240838	+	EIF3B	chr7	2419029	+
In-frame	ENST00000308330	ENST00000261267		TCGA	RV	SARC	TCGA-DX-A6BE-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
In-frame	ENST00000308330	ENST00000549690		TCGA	RV	SARC	TCGA-DX-A6BE-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000308330	ENST00000548839		TCGA	RV	SARC	TCGA-DX-A6BE-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000541171	ENST00000261267		TCGA	RV	SARC	TCGA-DX-A6BE-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000541171	ENST00000549690		TCGA	RV	SARC	TCGA-DX-A6BE-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
intron-3CDS	ENST00000541171	ENST00000548839		TCGA	RV	SARC	TCGA-DX-A6BE-01A	LEMD3	chr12	65564898	+	LYZ	chr12	69743888	+
5UTR-3CDS	ENST00000369983	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	CTDSP2	chr12	58218102	-
5UTR-intron	ENST00000369983	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	CTDSP2	chr12	58218102	-
5UTR-5UTR	ENST00000369983	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	CTDSP2	chr12	58218102	-
intron-3CDS	ENST00000476019	ENST00000398073		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	CTDSP2	chr12	58218102	-
intron-intron	ENST00000476019	ENST00000548823		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	CTDSP2	chr12	58218102	-
intron-5UTR	ENST00000476019	ENST00000547701		TCGA	RV	SARC	TCGA-DX-A23T-01A	GBF1	chr10	104005538	+	CTDSP2	chr12	58218102	-
In-frame	ENST00000344204	ENST00000230895		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
In-frame	ENST00000344204	ENST00000432074		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
5CDS-5UTR	ENST00000344204	ENST00000510546		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
In-frame	ENST00000537187	ENST00000230895		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
In-frame	ENST00000537187	ENST00000432074		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
5CDS-5UTR	ENST00000537187	ENST00000510546		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-3CDS	ENST00000509967	ENST00000230895		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-3CDS	ENST00000509967	ENST00000432074		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-5UTR	ENST00000509967	ENST00000510546		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-3CDS	ENST00000515710	ENST00000230895		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-3CDS	ENST00000515710	ENST00000432074		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-5UTR	ENST00000515710	ENST00000510546		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-3CDS	ENST00000344135	ENST00000230895		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-3CDS	ENST00000344135	ENST00000432074		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
intron-5UTR	ENST00000344135	ENST00000510546		TCGA	RV	SARC	TCGA-DX-AB2X-01A	TRIO	chr5	14420130	+	DAP	chr5	10748383	-
5CDS-3UTR	ENST00000255409	ENST00000355327		TCGA	RV	SARC	TCGA-IW-A3M6-01A	CHI3L1	chr1	203148059	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000255409	ENST00000261862		TCGA	RV	SARC	TCGA-IW-A3M6-01A	CHI3L1	chr1	203148059	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000255409	ENST00000357769		TCGA	RV	SARC	TCGA-IW-A3M6-01A	CHI3L1	chr1	203148059	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000255409	ENST00000567838		TCGA	RV	SARC	TCGA-IW-A3M6-01A	CHI3L1	chr1	203148059	-	THSD4	chr15	72072881	+
Frame-shit	ENST00000360814	ENST00000262238		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GLT8D2	chr12	104396913	-	YY1	chr14	100741035	+
Frame-shit	ENST00000546436	ENST00000262238		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GLT8D2	chr12	104396913	-	YY1	chr14	100741035	+
In-frame	ENST00000548660	ENST00000262238		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GLT8D2	chr12	104396913	-	YY1	chr14	100741035	+
intron-3CDS	ENST00000547583	ENST00000262238		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	GLT8D2	chr12	104396913	-	YY1	chr14	100741035	+
In-frame	ENST00000341156	ENST00000543727		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000341156	ENST00000550559		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000341156	ENST00000548851		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000341156	ENST00000454289		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000341156	ENST00000540550		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000341156	ENST00000323833		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000341156	ENST00000350762		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-3UTR	ENST00000341156	ENST00000497617		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000418555	ENST00000543727		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000418555	ENST00000550559		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000418555	ENST00000548851		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000418555	ENST00000454289		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000418555	ENST00000540550		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000418555	ENST00000323833		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000418555	ENST00000350762		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-3UTR	ENST00000418555	ENST00000497617		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000449184	ENST00000543727		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000449184	ENST00000550559		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000449184	ENST00000548851		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000449184	ENST00000454289		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000449184	ENST00000540550		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000449184	ENST00000323833		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000449184	ENST00000350762		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-3UTR	ENST00000449184	ENST00000497617		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000550764	ENST00000543727		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000550764	ENST00000550559		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000550764	ENST00000548851		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000550764	ENST00000454289		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000550764	ENST00000540550		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000550764	ENST00000323833		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000550764	ENST00000350762		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-3UTR	ENST00000550764	ENST00000497617		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000552350	ENST00000543727		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000552350	ENST00000550559		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000552350	ENST00000548851		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000552350	ENST00000454289		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000552350	ENST00000540550		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000552350	ENST00000323833		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-intron	ENST00000552350	ENST00000350762		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5CDS-3UTR	ENST00000552350	ENST00000497617		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-3CDS	ENST00000550943	ENST00000543727		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-3CDS	ENST00000550943	ENST00000550559		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-3CDS	ENST00000550943	ENST00000548851		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-3CDS	ENST00000550943	ENST00000454289		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-intron	ENST00000550943	ENST00000540550		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-intron	ENST00000550943	ENST00000323833		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-intron	ENST00000550943	ENST00000350762		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
5UTR-3UTR	ENST00000550943	ENST00000497617		TCGA	RV	SARC	TCGA-DX-AB2H-01A	B4GALNT1	chr12	58025698	-	TSFM	chr12	58186769	+
In-frame	ENST00000462284	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000356290	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000540827	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
In-frame	ENST00000258149	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000428863	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000393412	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
In-frame	ENST00000258148	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000544561	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000393410	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000393413	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000517852	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000545204	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
In-frame	ENST00000350057	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000360430	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000299252	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000348801	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
Frame-shit	ENST00000478070	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
intron-3CDS	ENST00000544125	ENST00000274625		TCGA	RV	SARC	TCGA-DX-AB3A-01A	MDM2	chr12	69214154	+	FGF18	chr5	170883543	+
Frame-shit	ENST00000379141	ENST00000300145		TCGA	RV	SARC	TCGA-MB-A8JL-01A	LRIG3	chr12	59307763	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000379141	ENST00000546709		TCGA	RV	SARC	TCGA-MB-A8JL-01A	LRIG3	chr12	59307763	-	XRCC6BP1	chr12	58339411	+
Frame-shit	ENST00000320743	ENST00000300145		TCGA	RV	SARC	TCGA-MB-A8JL-01A	LRIG3	chr12	59307763	-	XRCC6BP1	chr12	58339411	+
5CDS-intron	ENST00000320743	ENST00000546709		TCGA	RV	SARC	TCGA-MB-A8JL-01A	LRIG3	chr12	59307763	-	XRCC6BP1	chr12	58339411	+
In-frame	ENST00000261263	ENST00000358155		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72149068	+	DNM3	chr1	172050972	+
In-frame	ENST00000261263	ENST00000367733		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72149068	+	DNM3	chr1	172050972	+
In-frame	ENST00000261263	ENST00000355305		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72149068	+	DNM3	chr1	172050972	+
In-frame	ENST00000261263	ENST00000367731		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72149068	+	DNM3	chr1	172050972	+
In-frame	ENST00000261263	ENST00000520906		TCGA	RV	SARC	TCGA-SG-A6Z7-01A	RAB21	chr12	72149068	+	DNM3	chr1	172050972	+
5CDS-5UTR	ENST00000427025	ENST00000369091		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5CDS-5UTR	ENST00000427025	ENST00000369096		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5CDS-intron	ENST00000427025	ENST00000369089		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5CDS-5UTR	ENST00000343505	ENST00000369091		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5CDS-5UTR	ENST00000343505	ENST00000369096		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5CDS-intron	ENST00000343505	ENST00000369089		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5UTR-5UTR	ENST00000479393	ENST00000369091		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5UTR-5UTR	ENST00000479393	ENST00000369096		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
5UTR-intron	ENST00000479393	ENST00000369089		TCGA	RV	SARC	TCGA-DX-A23Y-01A	NHSL1	chr6	138817356	-	PRDM1	chr6	106536076	+
Frame-shit	ENST00000258526	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
In-frame	ENST00000258526	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000258526	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000258526	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000258526	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000258526	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000258526	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-intron	ENST00000258526	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
In-frame	ENST00000547057	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000547057	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000547057	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000547057	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000547057	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000547057	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-intron	ENST00000547057	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3CDS	ENST00000551495	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3UTR	ENST00000551495	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3UTR	ENST00000551495	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3UTR	ENST00000551495	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-3UTR	ENST00000551495	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
intron-intron	ENST00000551495	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000525566		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000429002		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000503506		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000526691		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000388854		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000354940		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000526390		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000529546		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
In-frame	ENST00000545312	ENST00000540716		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000524698		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
Frame-shit	ENST00000545312	ENST00000542918		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000545312	ENST00000378070		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000545312	ENST00000397736		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000545312	ENST00000427956		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-3UTR	ENST00000545312	ENST00000526950		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
5CDS-intron	ENST00000545312	ENST00000526006		TCGA	RV	SARC	TCGA-DX-A3U5-01A	PLXNC1	chr12	94676177	+	TXNRD1	chr12	104742131	+
In-frame	ENST00000353139	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000353139	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000353139	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000353139	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000353139	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000353139	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000353139	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-3CDS	ENST00000360679	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000360679	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000360679	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000360679	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000360679	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000360679	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000360679	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
Frame-shit	ENST00000394406	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000394406	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000394406	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000394406	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000394406	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000394406	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000394406	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-3CDS	ENST00000335166	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000335166	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000335166	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000335166	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000335166	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000335166	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000335166	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
Frame-shit	ENST00000416895	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000416895	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000416895	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000416895	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000416895	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000416895	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000416895	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-3CDS	ENST00000361253	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000361253	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000361253	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000361253	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000361253	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000361253	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000361253	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
Frame-shit	ENST00000588142	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000588142	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000588142	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000588142	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000588142	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000588142	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
5CDS-intron	ENST00000588142	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-3CDS	ENST00000589665	ENST00000550916		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000589665	ENST00000378689		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000589665	ENST00000435775		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000589665	ENST00000378692		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000589665	ENST00000320460		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000589665	ENST00000547164		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
intron-intron	ENST00000589665	ENST00000441218		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ACACA	chr17	35687113	-	GLIPR1L2	chr12	75816684	+
Frame-shit	ENST00000545606	ENST00000538666		TCGA	RV	SARC	TCGA-DX-A7ES-01A	CAND1	chr12	67686556	+	IL22	chr12	68642656	-
In-frame	ENST00000545606	ENST00000328087		TCGA	RV	SARC	TCGA-DX-A7ES-01A	CAND1	chr12	67686556	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000539109	ENST00000538666		TCGA	RV	SARC	TCGA-DX-A7ES-01A	CAND1	chr12	67686556	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000539109	ENST00000328087		TCGA	RV	SARC	TCGA-DX-A7ES-01A	CAND1	chr12	67686556	+	IL22	chr12	68642656	-
5CDS-intron	ENST00000157812	ENST00000299293		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000157812	ENST00000549921		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000157812	ENST00000550389		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000157812	ENST00000397997		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000455878	ENST00000299293		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000455878	ENST00000549921		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000455878	ENST00000550389		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
5CDS-intron	ENST00000455878	ENST00000397997		TCGA	RV	SARC	TCGA-3B-A9HO-01A	PSMC4	chr19	40486624	+	FRS2	chr12	69879982	+
In-frame	ENST00000321196	ENST00000341700		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC2	chr12	83290425	+	GNA14	chr9	80144169	-
5CDS-intron	ENST00000321196	ENST00000464095		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC2	chr12	83290425	+	GNA14	chr9	80144169	-
In-frame	ENST00000548305	ENST00000341700		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC2	chr12	83290425	+	GNA14	chr9	80144169	-
5CDS-intron	ENST00000548305	ENST00000464095		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC2	chr12	83290425	+	GNA14	chr9	80144169	-
In-frame	ENST00000549919	ENST00000341700		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC2	chr12	83290425	+	GNA14	chr9	80144169	-
5CDS-intron	ENST00000549919	ENST00000464095		TCGA	RV	SARC	TCGA-DX-A48N-01A	TMTC2	chr12	83290425	+	GNA14	chr9	80144169	-
5UTR-3CDS	ENST00000253233	ENST00000338825		TCGA	RV	SARC	TCGA-DX-A3LS-01A	C12orf65	chr12	123718078	+	EIF4EBP1	chr8	37914599	+
5UTR-3UTR	ENST00000253233	ENST00000520657		TCGA	RV	SARC	TCGA-DX-A3LS-01A	C12orf65	chr12	123718078	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000366329	ENST00000338825		TCGA	RV	SARC	TCGA-DX-A3LS-01A	C12orf65	chr12	123718078	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000366329	ENST00000520657		TCGA	RV	SARC	TCGA-DX-A3LS-01A	C12orf65	chr12	123718078	+	EIF4EBP1	chr8	37914599	+
intron-3CDS	ENST00000429587	ENST00000338825		TCGA	RV	SARC	TCGA-DX-A3LS-01A	C12orf65	chr12	123718078	+	EIF4EBP1	chr8	37914599	+
intron-3UTR	ENST00000429587	ENST00000520657		TCGA	RV	SARC	TCGA-DX-A3LS-01A	C12orf65	chr12	123718078	+	EIF4EBP1	chr8	37914599	+
5CDS-5UTR	ENST00000254108	ENST00000547303		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000254108	ENST00000551116		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000254108	ENST00000346473		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000254108	ENST00000552740		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000380244	ENST00000547303		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000380244	ENST00000551116		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000380244	ENST00000346473		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000380244	ENST00000552740		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000568685	ENST00000547303		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000568685	ENST00000551116		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000568685	ENST00000346473		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
5CDS-5UTR	ENST00000568685	ENST00000552740		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
3UTR-5UTR	ENST00000474990	ENST00000547303		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
3UTR-5UTR	ENST00000474990	ENST00000551116		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
3UTR-5UTR	ENST00000474990	ENST00000346473		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
3UTR-5UTR	ENST00000474990	ENST00000552740		TCGA	RV	SARC	TCGA-Z4-A9VC-01A	FUS	chr16	31199678	+	DDIT3	chr12	57911536	-
In-frame	ENST00000352035	ENST00000588240		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000352035	ENST00000592237		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000352035	ENST00000311979		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
Frame-shit	ENST00000590151	ENST00000588240		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
Frame-shit	ENST00000590151	ENST00000592237		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
Frame-shit	ENST00000590151	ENST00000311979		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000353196	ENST00000588240		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000353196	ENST00000592237		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000353196	ENST00000311979		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000537919	ENST00000588240		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000537919	ENST00000592237		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000537919	ENST00000311979		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
Frame-shit	ENST00000393896	ENST00000588240		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
Frame-shit	ENST00000393896	ENST00000592237		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
Frame-shit	ENST00000393896	ENST00000311979		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
intron-3CDS	ENST00000588779	ENST00000588240		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
intron-3CDS	ENST00000588779	ENST00000592237		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
intron-3CDS	ENST00000588779	ENST00000311979		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	ACLY	chr17	40054002	-	TAF15	chr17	34163136	+
In-frame	ENST00000418919	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000418919	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000418919	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
5CDS-intron	ENST00000418919	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000258145	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000258145	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000258145	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
5CDS-intron	ENST00000258145	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000543646	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000543646	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000543646	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
5CDS-intron	ENST00000543646	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000542058	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000542058	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
In-frame	ENST00000542058	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
5CDS-intron	ENST00000542058	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1KW-01A	GNS	chr12	65130784	-	NUP107	chr12	69103018	+
Frame-shit	ENST00000484532	ENST00000511072		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000484532	ENST00000442529		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000484532	ENST00000378398		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000484532	ENST00000441472		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000484532	ENST00000378391		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000484532	ENST00000514189		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000484532	ENST00000270722		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
5CDS-3UTR	ENST00000484532	ENST00000512462		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000511072		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000442529		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000378398		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000441472		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000378391		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000514189		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000234875	ENST00000270722		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
5CDS-3UTR	ENST00000234875	ENST00000512462		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000511072		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000442529		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000378398		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000441472		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000378391		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000514189		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
Frame-shit	ENST00000497965	ENST00000270722		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
5CDS-3UTR	ENST00000497965	ENST00000512462		TCGA	RV	SARC	TCGA-DX-AB2X-01A	RPL22	chr1	6257712	-	PRDM16	chr1	3342145	+
5UTR-3CDS	ENST00000552432	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000552432	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000552432	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-intron	ENST00000552432	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000547379	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000547379	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000547379	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-intron	ENST00000547379	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000549465	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000549465	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-3CDS	ENST00000549465	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5UTR-intron	ENST00000549465	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000552024	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000552024	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000552024	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-intron	ENST00000552024	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000261187	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000261187	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000261187	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-intron	ENST00000261187	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000543448	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000543448	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000543448	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-intron	ENST00000543448	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000549588	ENST00000229179		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000549588	ENST00000378905		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-3CDS	ENST00000549588	ENST00000539906		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
intron-intron	ENST00000549588	ENST00000401003		TCGA	RV	SARC	TCGA-DX-A1L0-01A	SLC16A7	chr12	59990017	+	NUP107	chr12	69127232	+
5CDS-3UTR	ENST00000496817	ENST00000355327		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000496817	ENST00000261862		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000496817	ENST00000357769		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000496817	ENST00000567838		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000368719	ENST00000355327		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000368719	ENST00000261862		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000368719	ENST00000357769		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000368719	ENST00000567838		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000368720	ENST00000355327		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000368720	ENST00000261862		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000368720	ENST00000357769		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5CDS-intron	ENST00000368720	ENST00000567838		TCGA	RV	SARC	TCGA-IW-A3M6-01A	S100A6	chr1	153507075	-	THSD4	chr15	72072881	+
5UTR-3CDS	ENST00000395762	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000395762	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000395762	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000543915	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000543915	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000543915	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000449195	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000449195	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000449195	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000380922	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000380922	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000380922	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000170630	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000170630	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000170630	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000565915	ENST00000356140		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000565915	ENST00000283054		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000565915	ENST00000392928		TCGA	RV	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27341519	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000336451	ENST00000367321		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
intron-intron	ENST00000336451	ENST00000367307		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
intron-intron	ENST00000336451	ENST00000478643		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
5UTR-3CDS	ENST00000367303	ENST00000367321		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
5UTR-intron	ENST00000367303	ENST00000367307		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
5UTR-intron	ENST00000367303	ENST00000478643		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
intron-3CDS	ENST00000491268	ENST00000367321		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
intron-intron	ENST00000491268	ENST00000367307		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
intron-intron	ENST00000491268	ENST00000478643		TCGA	RV	SARC	TCGA-HB-A3YV-01A	RMND1	chr6	151773151	-	MTHFD1L	chr6	151226786	+
intron-intron	ENST00000360772	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000360772	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000360772	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000360772	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000360772	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000359169	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000359169	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000359169	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000359169	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000359169	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000360304	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000360304	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000360304	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000360304	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
5CDS-intron	ENST00000360304	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000418370	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000418370	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000418370	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000418370	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000418370	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000578202	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000578202	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000578202	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000578202	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000578202	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000354792	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000354792	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000354792	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000354792	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000354792	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000346322	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000346322	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000346322	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000346322	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000346322	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000583087	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000583087	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000583087	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000583087	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000583087	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000475616	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000475616	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000475616	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000475616	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000475616	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000510775	ENST00000366794		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000510775	ENST00000490921		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000510775	ENST00000366792		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000510775	ENST00000366791		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
intron-intron	ENST00000510775	ENST00000366790		TCGA	RV	SARC	TCGA-HB-A3L4-01A	MYLK	chr3	123331145	-	PARP1	chr1	224102800	-
In-frame	ENST00000368009	ENST00000367727		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-intron	ENST00000368009	ENST00000460397		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000368009	ENST00000367726		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000368009	ENST00000367725		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
In-frame	ENST00000368007	ENST00000367727		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-intron	ENST00000368007	ENST00000460397		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000368007	ENST00000367726		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000368007	ENST00000367725		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
In-frame	ENST00000392190	ENST00000367727		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-intron	ENST00000392190	ENST00000460397		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000392190	ENST00000367726		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000392190	ENST00000367725		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
In-frame	ENST00000368008	ENST00000367727		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-intron	ENST00000368008	ENST00000460397		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000368008	ENST00000367726		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5CDS-3UTR	ENST00000368008	ENST00000367725		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
3UTR-3CDS	ENST00000496861	ENST00000367727		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
3UTR-intron	ENST00000496861	ENST00000460397		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
3UTR-3UTR	ENST00000496861	ENST00000367726		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
3UTR-3UTR	ENST00000496861	ENST00000367725		TCGA	RV	SARC	TCGA-DX-AB2S-01A	NIT1	chr1	161090022	+	C1orf105	chr1	172431318	+
5UTR-3CDS	ENST00000250559	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000393436	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000341355	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000537460	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
intron-3CDS	ENST00000463493	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000450214	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000543393	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000378985	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000540209	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000539091	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000542145	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000543697	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
5UTR-3CDS	ENST00000541216	ENST00000367817		TCGA	RV	SARC	TCGA-DX-A1KU-01A	RAP1B	chr12	69004823	+	DPT	chr1	168683584	-
In-frame	ENST00000415083	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000542420	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000542743	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000539849	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000269137	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000545952	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
intron-3CDS	ENST00000585241	ENST00000376919		TCGA	RV	SARC	TCGA-X6-A8C7-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000336061	ENST00000176763		TCGA	RV	SARC	TCGA-FX-A2QS-01A	RASSF3	chr12	65004523	+	STK10	chr5	171491816	-
5CDS-intron	ENST00000336061	ENST00000517775		TCGA	RV	SARC	TCGA-FX-A2QS-01A	RASSF3	chr12	65004523	+	STK10	chr5	171491816	-
In-frame	ENST00000542104	ENST00000176763		TCGA	RV	SARC	TCGA-FX-A2QS-01A	RASSF3	chr12	65004523	+	STK10	chr5	171491816	-
5CDS-intron	ENST00000542104	ENST00000517775		TCGA	RV	SARC	TCGA-FX-A2QS-01A	RASSF3	chr12	65004523	+	STK10	chr5	171491816	-
3UTR-3CDS	ENST00000540088	ENST00000176763		TCGA	RV	SARC	TCGA-FX-A2QS-01A	RASSF3	chr12	65004523	+	STK10	chr5	171491816	-
3UTR-intron	ENST00000540088	ENST00000517775		TCGA	RV	SARC	TCGA-FX-A2QS-01A	RASSF3	chr12	65004523	+	STK10	chr5	171491816	-
In-frame	ENST00000415083	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000542420	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000542743	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000539849	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000269137	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000545952	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
intron-3CDS	ENST00000585241	ENST00000376919		TCGA	RV	SARC	TCGA-DX-AB3B-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000415083	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000542420	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000542743	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
Frame-shit	ENST00000539849	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000269137	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
In-frame	ENST00000545952	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
intron-3CDS	ENST00000585241	ENST00000376919		TCGA	RV	SARC	TCGA-MJ-A850-01A	SS18	chr18	23612363	-	SSX1	chrX	48123217	+
5UTR-3CDS	ENST00000368655	ENST00000444921		TCGA	RV	SARC	TCGA-DX-A1L2-01A	GATAD2B	chr1	153895209	-	GRM8	chr7	126086426	-
5UTR-3CDS	ENST00000368655	ENST00000339582		TCGA	RV	SARC	TCGA-DX-A1L2-01A	GATAD2B	chr1	153895209	-	GRM8	chr7	126086426	-
5UTR-3CDS	ENST00000368655	ENST00000358373		TCGA	RV	SARC	TCGA-DX-A1L2-01A	GATAD2B	chr1	153895209	-	GRM8	chr7	126086426	-
5UTR-intron	ENST00000368655	ENST00000405249		TCGA	RV	SARC	TCGA-DX-A1L2-01A	GATAD2B	chr1	153895209	-	GRM8	chr7	126086426	-
5UTR-intron	ENST00000368655	ENST00000480995		TCGA	RV	SARC	TCGA-DX-A1L2-01A	GATAD2B	chr1	153895209	-	GRM8	chr7	126086426	-
5CDS-5UTR	ENST00000403681	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000403681	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000403681	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000403681	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000403681	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000403681	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000403681	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000403681	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-5UTR	ENST00000541363	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000541363	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000541363	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000541363	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000541363	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000541363	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000541363	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000541363	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-5UTR	ENST00000393577	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393577	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393577	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393577	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393577	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393577	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000393577	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000393577	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-5UTR	ENST00000393578	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393578	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393578	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393578	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393578	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000393578	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000393578	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000393578	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-5UTR	ENST00000425208	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000425208	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000425208	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000425208	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000425208	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000425208	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000425208	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000425208	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-5UTR	ENST00000536545	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000536545	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000536545	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000536545	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000536545	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000536545	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000536545	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000536545	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-5UTR	ENST00000354636	ENST00000485760		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000354636	ENST00000371236		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000354636	ENST00000371234		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000354636	ENST00000420954		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000354636	ENST00000439789		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-3UTR	ENST00000354636	ENST00000414851		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000354636	ENST00000371231		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5CDS-intron	ENST00000354636	ENST00000371230		TCGA	RV	SARC	TCGA-DX-A6BG-01A	HMGA2	chr12	66232349	+	DAB1	chr1	57463801	-
5UTR-3CDS	ENST00000299293	ENST00000366794		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-5UTR	ENST00000299293	ENST00000490921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000299293	ENST00000366792		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000299293	ENST00000366791		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000299293	ENST00000366790		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-3CDS	ENST00000549921	ENST00000366794		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-5UTR	ENST00000549921	ENST00000490921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000549921	ENST00000366792		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000549921	ENST00000366791		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000549921	ENST00000366790		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-3CDS	ENST00000550389	ENST00000366794		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-5UTR	ENST00000550389	ENST00000490921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000550389	ENST00000366792		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000550389	ENST00000366791		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
5UTR-intron	ENST00000550389	ENST00000366790		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
intron-3CDS	ENST00000397997	ENST00000366794		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
intron-5UTR	ENST00000397997	ENST00000490921		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
intron-intron	ENST00000397997	ENST00000366792		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
intron-intron	ENST00000397997	ENST00000366791		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
intron-intron	ENST00000397997	ENST00000366790		TCGA	RV	SARC	TCGA-DX-A7EI-01A	FRS2	chr12	69864310	+	PARP1	chr1	226558218	-
Frame-shit	ENST00000300291	ENST00000568104		TCGA	RV	SARC	TCGA-HS-A5N7-01A	NUDT21	chr16	56473569	-	BBS2	chr16	56518779	-
In-frame	ENST00000300291	ENST00000245157		TCGA	RV	SARC	TCGA-HS-A5N7-01A	NUDT21	chr16	56473569	-	BBS2	chr16	56518779	-
5CDS-intron	ENST00000300291	ENST00000561951		TCGA	RV	SARC	TCGA-HS-A5N7-01A	NUDT21	chr16	56473569	-	BBS2	chr16	56518779	-
intron-3CDS	ENST00000540746	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
intron-intron	ENST00000540746	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
intron-intron	ENST00000540746	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
Frame-shit	ENST00000544216	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000544216	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000544216	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
Frame-shit	ENST00000433627	ENST00000321196		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000433627	ENST00000548305		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000433627	ENST00000549919		TCGA	RV	SARC	TCGA-DX-A7EI-01A	LSM14A	chr19	34699956	+	TMTC2	chr12	83525989	+
5UTR-3CDS	ENST00000243045	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-3CDS	ENST00000243045	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-intron	ENST00000243045	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-3CDS	ENST00000552672	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-3CDS	ENST00000552672	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-intron	ENST00000552672	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-3CDS	ENST00000550836	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-3CDS	ENST00000550836	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
5UTR-intron	ENST00000550836	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000548974	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000548974	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
intron-intron	ENST00000548974	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	SARNP	chr12	56151337	-
In-frame	ENST00000258526	ENST00000397809		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
In-frame	ENST00000258526	ENST00000339839		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5CDS-intron	ENST00000258526	ENST00000397807		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5CDS-intron	ENST00000258526	ENST00000547575		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5CDS-intron	ENST00000258526	ENST00000549352		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
In-frame	ENST00000547057	ENST00000397809		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
In-frame	ENST00000547057	ENST00000339839		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5CDS-intron	ENST00000547057	ENST00000397807		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5CDS-intron	ENST00000547057	ENST00000547575		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5CDS-intron	ENST00000547057	ENST00000549352		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
intron-3CDS	ENST00000551495	ENST00000397809		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
intron-3CDS	ENST00000551495	ENST00000339839		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
intron-intron	ENST00000551495	ENST00000397807		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
intron-intron	ENST00000551495	ENST00000547575		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
intron-intron	ENST00000551495	ENST00000549352		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5UTR-3CDS	ENST00000545312	ENST00000397809		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5UTR-3CDS	ENST00000545312	ENST00000339839		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5UTR-intron	ENST00000545312	ENST00000397807		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5UTR-intron	ENST00000545312	ENST00000547575		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5UTR-intron	ENST00000545312	ENST00000549352		TCGA	RV	SARC	TCGA-DX-A2IZ-01A	PLXNC1	chr12	94659001	+	CCDC41	chr12	94706793	-
5UTR-3CDS	ENST00000299293	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000299293	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000299293	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-3CDS	ENST00000549921	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000549921	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000549921	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
intron-3CDS	ENST00000550389	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
intron-intron	ENST00000550389	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
intron-intron	ENST00000550389	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-3CDS	ENST00000397997	ENST00000321196		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000397997	ENST00000548305		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000397997	ENST00000549919		TCGA	RV	SARC	TCGA-FX-A2QS-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
In-frame	ENST00000435070	ENST00000357250		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
Frame-shit	ENST00000435070	ENST00000320755		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000435070	ENST00000370499		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-5UTR	ENST00000435070	ENST00000489611		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-intron	ENST00000435070	ENST00000370496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000456847	ENST00000357250		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
Frame-shit	ENST00000456847	ENST00000320755		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000456847	ENST00000370499		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-5UTR	ENST00000456847	ENST00000489611		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-intron	ENST00000456847	ENST00000370496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000266679	ENST00000357250		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
Frame-shit	ENST00000266679	ENST00000320755		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000266679	ENST00000370499		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-5UTR	ENST00000266679	ENST00000489611		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-intron	ENST00000266679	ENST00000370496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
3UTR-3CDS	ENST00000550987	ENST00000357250		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
3UTR-3CDS	ENST00000550987	ENST00000320755		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
3UTR-3CDS	ENST00000550987	ENST00000370499		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
3UTR-5UTR	ENST00000550987	ENST00000489611		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
3UTR-intron	ENST00000550987	ENST00000370496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000551516	ENST00000357250		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
Frame-shit	ENST00000551516	ENST00000320755		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000551516	ENST00000370499		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-5UTR	ENST00000551516	ENST00000489611		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
5CDS-intron	ENST00000551516	ENST00000370496		TCGA	RV	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69633486	+	COL9A1	chr6	70926784	-
In-frame	ENST00000540306	ENST00000580599		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
In-frame	ENST00000540306	ENST00000394638		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
In-frame	ENST00000540306	ENST00000269053		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
5CDS-3UTR	ENST00000540306	ENST00000394637		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
In-frame	ENST00000262415	ENST00000580599		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
In-frame	ENST00000262415	ENST00000394638		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
In-frame	ENST00000262415	ENST00000269053		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
5CDS-3UTR	ENST00000262415	ENST00000394637		TCGA	RV	SARC	TCGA-WK-A8Y0-01A	DHX8	chr17	41561553	+	SPACA3	chr17	31323861	+
Frame-shit	ENST00000308086	ENST00000247843		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000308086	ENST00000548020		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000547843	ENST00000247843		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	YEATS4	chr12	69783927	+
Frame-shit	ENST00000547843	ENST00000548020		TCGA	RV	SARC	TCGA-DX-AB2H-01A	THAP2	chr12	72058360	+	YEATS4	chr12	69783927	+
5CDS-intron	ENST00000251047	ENST00000449802		TCGA	RV	SARC	TCGA-DX-AB32-01A	LMAN1	chr18	57013151	-	NBEAL1	chr2	204090846	+
5CDS-intron	ENST00000251047	ENST00000478884		TCGA	RV	SARC	TCGA-DX-AB32-01A	LMAN1	chr18	57013151	-	NBEAL1	chr2	204090846	+
intron-intron	ENST00000587940	ENST00000449802		TCGA	RV	SARC	TCGA-DX-AB32-01A	LMAN1	chr18	57013151	-	NBEAL1	chr2	204090846	+
intron-intron	ENST00000587940	ENST00000478884		TCGA	RV	SARC	TCGA-DX-AB32-01A	LMAN1	chr18	57013151	-	NBEAL1	chr2	204090846	+
In-frame	ENST00000360416	ENST00000361570		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000360416	ENST00000304494		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000360416	ENST00000579755		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000360416	ENST00000579122		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000578845		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000530628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000498124		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000498628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000494262		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000446177		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000479692		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000360416	ENST00000497750		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000360416	ENST00000470819		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000379980	ENST00000361570		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000379980	ENST00000304494		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000379980	ENST00000579755		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000379980	ENST00000579122		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000578845		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000530628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000498124		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000498628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000494262		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000446177		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000479692		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000379980	ENST00000497750		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000379980	ENST00000470819		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000396239	ENST00000361570		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000396239	ENST00000304494		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000396239	ENST00000579755		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000396239	ENST00000579122		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000578845		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000530628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000498124		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000498628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000494262		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000446177		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000479692		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000396239	ENST00000497750		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000396239	ENST00000470819		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000269243	ENST00000361570		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000269243	ENST00000304494		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000269243	ENST00000579755		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000269243	ENST00000579122		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000578845		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000530628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000498124		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000498628		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000494262		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000446177		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000479692		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000269243	ENST00000497750		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000269243	ENST00000470819		TCGA	RV	SARC	TCGA-SI-A71P-01A	MYH10	chr17	8526220	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000361099	ENST00000392246		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000361099	ENST00000392245		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000361099	ENST00000409368		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000361099	ENST00000392244		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000361099	ENST00000409712		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000361099	ENST00000409181		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000361099	ENST00000409498		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000361099	ENST00000409205		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-5UTR	ENST00000361099	ENST00000469034		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000409465	ENST00000392246		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000409465	ENST00000392245		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000409465	ENST00000409368		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
Frame-shit	ENST00000409465	ENST00000392244		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000409465	ENST00000409712		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000409465	ENST00000409181		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000409465	ENST00000409498		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-intron	ENST00000409465	ENST00000409205		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5CDS-5UTR	ENST00000409465	ENST00000469034		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-3CDS	ENST00000540176	ENST00000392246		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-3CDS	ENST00000540176	ENST00000392245		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-3CDS	ENST00000540176	ENST00000409368		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-3CDS	ENST00000540176	ENST00000392244		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-intron	ENST00000540176	ENST00000409712		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-intron	ENST00000540176	ENST00000409181		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-intron	ENST00000540176	ENST00000409498		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-intron	ENST00000540176	ENST00000409205		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
3UTR-5UTR	ENST00000540176	ENST00000469034		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392322	ENST00000392246		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392322	ENST00000392245		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392322	ENST00000409368		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392322	ENST00000392244		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392322	ENST00000409712		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392322	ENST00000409181		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392322	ENST00000409498		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392322	ENST00000409205		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-5UTR	ENST00000392322	ENST00000469034		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392323	ENST00000392246		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392323	ENST00000392245		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392323	ENST00000409368		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-3CDS	ENST00000392323	ENST00000392244		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392323	ENST00000409712		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392323	ENST00000409181		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392323	ENST00000409498		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-intron	ENST00000392323	ENST00000409205		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
intron-5UTR	ENST00000392323	ENST00000469034		TCGA	RV	SARC	TCGA-DX-A8BG-01A	STAT1	chr2	191839556	-	SUMO1	chr2	203075529	-
5UTR-3CDS	ENST00000319670	ENST00000338432		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
5UTR-3CDS	ENST00000319670	ENST00000377854		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
5UTR-3CDS	ENST00000319670	ENST00000377848		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
5UTR-intron	ENST00000319670	ENST00000543080		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
5UTR-intron	ENST00000319670	ENST00000543201		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
intron-3CDS	ENST00000359920	ENST00000338432		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
intron-3CDS	ENST00000359920	ENST00000377854		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
intron-3CDS	ENST00000359920	ENST00000377848		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
intron-intron	ENST00000359920	ENST00000543080		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
intron-intron	ENST00000359920	ENST00000543201		TCGA	RV	SARC	TCGA-3B-A9HS-01A	ARHGEF18	chr19	7460133	+	ACACB	chr12	109634813	+
Frame-shit	ENST00000544484	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000544484	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000544484	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000544484	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000357008	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000357008	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000357008	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000357008	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000309577	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000309577	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000309577	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000309577	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000544040	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000544040	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000544040	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000544040	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000540960	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000540960	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000540960	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
intron-intron	ENST00000540960	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23R-01A	CHD4	chr12	6700632	-	CPM	chr12	69265736	-
Frame-shit	ENST00000324472	ENST00000229179		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
5CDS-intron	ENST00000324472	ENST00000378905		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
5CDS-intron	ENST00000324472	ENST00000539906		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
5CDS-intron	ENST00000324472	ENST00000401003		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
intron-3CDS	ENST00000413230	ENST00000229179		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
intron-intron	ENST00000413230	ENST00000378905		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
intron-intron	ENST00000413230	ENST00000539906		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
intron-intron	ENST00000413230	ENST00000401003		TCGA	RV	SARC	TCGA-DX-AB35-01A	DPY19L2	chr12	64059615	-	NUP107	chr12	69124890	+
In-frame	ENST00000265729	ENST00000422156		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000265729	ENST00000540759		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000265729	ENST00000550465		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000265729	ENST00000354947		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000419179	ENST00000422156		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000419179	ENST00000540759		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000419179	ENST00000550465		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000419179	ENST00000354947		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000490437	ENST00000422156		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000490437	ENST00000540759		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000490437	ENST00000550465		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000490437	ENST00000354947		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000394641	ENST00000422156		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000394641	ENST00000540759		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000394641	ENST00000550465		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000394641	ENST00000354947		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000431660	ENST00000422156		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000431660	ENST00000540759		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000431660	ENST00000550465		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
In-frame	ENST00000431660	ENST00000354947		TCGA	RV	SARC	TCGA-DX-A6BH-01A	SRI	chr7	87840197	-	PIP4K2C	chr12	57987808	+
5CDS-intron	ENST00000252456	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000252456	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000252456	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000252456	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000252456	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000252456	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000252456	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
5CDS-intron	ENST00000592923	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000535659	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000588468	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000398158		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000398165		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000359624		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000352178		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000398168		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000544202		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-intron	ENST00000544952	ENST00000470912		TCGA	RV	SARC	TCGA-DX-A6BA-01A	CNN1	chr19	11661138	+	CBS	chr21	44476011	-
intron-3CDS	ENST00000430710	ENST00000377869		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000430710	ENST00000220616		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000430710	ENST00000542445		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000430710	ENST00000519543		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-intron	ENST00000430710	ENST00000522523		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000399982	ENST00000377869		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000399982	ENST00000220616		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000399982	ENST00000542445		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000399982	ENST00000519543		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-intron	ENST00000399982	ENST00000522523		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000557364	ENST00000377869		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000557364	ENST00000220616		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000557364	ENST00000542445		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
5UTR-3CDS	ENST00000557364	ENST00000519543		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
5UTR-intron	ENST00000557364	ENST00000522523		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000555962	ENST00000377869		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000555962	ENST00000220616		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000555962	ENST00000542445		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-3CDS	ENST00000555962	ENST00000519543		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
intron-intron	ENST00000555962	ENST00000522523		TCGA	RV	SARC	TCGA-DX-A7EU-01A	CHD8	chr14	21924191	-	TG	chr8	134144056	+
In-frame	ENST00000418919	ENST00000336061		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000418919	ENST00000542104		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000418919	ENST00000540088		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000258145	ENST00000336061		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000258145	ENST00000542104		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000258145	ENST00000540088		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000543646	ENST00000336061		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000543646	ENST00000542104		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000543646	ENST00000540088		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000542058	ENST00000336061		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
In-frame	ENST00000542058	ENST00000542104		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
5CDS-intron	ENST00000542058	ENST00000540088		TCGA	RV	SARC	TCGA-DX-A23T-01A	GNS	chr12	65136921	-	RASSF3	chr12	65078567	+
Frame-shit	ENST00000080059	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000080059	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000080059	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000354334	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000354334	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000354334	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000552960	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000552960	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000552960	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000380610	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000380610	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000380610	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000427332	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000427332	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000427332	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
intron-3CDS	ENST00000488927	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
intron-3CDS	ENST00000488927	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
intron-3CDS	ENST00000488927	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LT-01A	HDAC7	chr12	48181828	-	SRGAP1	chr12	64536075	+
Frame-shit	ENST00000357668	ENST00000389327		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
Frame-shit	ENST00000357668	ENST00000389328		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
Frame-shit	ENST00000357668	ENST00000438773		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
5CDS-5UTR	ENST00000357668	ENST00000522504		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
Frame-shit	ENST00000518721	ENST00000389327		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
In-frame	ENST00000518721	ENST00000389328		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
Frame-shit	ENST00000518721	ENST00000438773		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
5CDS-5UTR	ENST00000518721	ENST00000522504		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
intron-3CDS	ENST00000520625	ENST00000389327		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
intron-3CDS	ENST00000520625	ENST00000389328		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
intron-3CDS	ENST00000520625	ENST00000438773		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
intron-5UTR	ENST00000520625	ENST00000522504		TCGA	RV	SARC	TCGA-DX-A6YX-01A	ASAP1	chr8	131226802	-	TRAPPC9	chr8	140743471	-
5CDS-intron	ENST00000412830	ENST00000550317		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000412830	ENST00000545036		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000412830	ENST00000308208		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000412830	ENST00000552694		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000541166	ENST00000550317		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000541166	ENST00000545036		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000541166	ENST00000308208		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000541166	ENST00000552694		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PWP1	chr12	108098524	+	CCDC63	chr12	111330880	+
5CDS-intron	ENST00000549578	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5CDS-intron	ENST00000549578	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5CDS-intron	ENST00000360579	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5CDS-intron	ENST00000360579	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5UTR-intron	ENST00000552130	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5UTR-intron	ENST00000552130	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5UTR-intron	ENST00000447578	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5UTR-intron	ENST00000447578	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5CDS-intron	ENST00000546588	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5CDS-intron	ENST00000546588	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5UTR-intron	ENST00000549970	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
5UTR-intron	ENST00000549970	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
intron-intron	ENST00000551655	ENST00000281938		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
intron-intron	ENST00000551655	ENST00000542496		TCGA	RV	SARC	TCGA-PC-A5DN-01A	VPS29	chr12	110933817	-	HSPB8	chr12	119658519	+
Frame-shit	ENST00000548249	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000548249	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000548249	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000537439	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000537439	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000537439	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000434715	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000434715	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000434715	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000543672	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000543672	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
5CDS-5UTR	ENST00000543672	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000551400	ENST00000355086		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
intron-3CDS	ENST00000551400	ENST00000357825		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
intron-5UTR	ENST00000551400	ENST00000543397		TCGA	RV	SARC	TCGA-DX-A3LY-01B	DCTN2	chr12	57940811	-	SRGAP1	chr12	64377727	+
Frame-shit	ENST00000261182	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
In-frame	ENST00000393263	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
intron-3CDS	ENST00000431879	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
Frame-shit	ENST00000547773	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
intron-3CDS	ENST00000544816	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
5UTR-3CDS	ENST00000542344	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
Frame-shit	ENST00000535020	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
Frame-shit	ENST00000549596	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
intron-3CDS	ENST00000547993	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
Frame-shit	ENST00000552342	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
intron-3CDS	ENST00000548044	ENST00000346234		TCGA	RV	SARC	TCGA-DX-A6BE-01A	NAP1L1	chr12	76467983	-	OSTF1	chr9	77752454	+
5UTR-3CDS	ENST00000299293	ENST00000537081		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
5UTR-3CDS	ENST00000299293	ENST00000257861		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
5UTR-intron	ENST00000299293	ENST00000550083		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000549921	ENST00000537081		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000549921	ENST00000257861		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-intron	ENST00000549921	ENST00000550083		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000550389	ENST00000537081		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000550389	ENST00000257861		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-intron	ENST00000550389	ENST00000550083		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000397997	ENST00000537081		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-3CDS	ENST00000397997	ENST00000257861		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
intron-intron	ENST00000397997	ENST00000550083		TCGA	RV	SARC	TCGA-3B-A9HO-01A	FRS2	chr12	69931763	+	AVIL	chr12	58193703	-
In-frame	ENST00000368503	ENST00000299300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000368503	ENST00000544368		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000368503	ENST00000543146		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000296955	ENST00000299300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000296955	ENST00000544368		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000296955	ENST00000543146		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000338728	ENST00000299300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000338728	ENST00000544368		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
In-frame	ENST00000338728	ENST00000543146		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000534777	ENST00000299300		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000534777	ENST00000544368		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
intron-3CDS	ENST00000534777	ENST00000543146		TCGA	RV	SARC	TCGA-3B-A9HL-01A	DCBLD1	chr6	117825142	+	CCT2	chr12	69985839	+
Frame-shit	ENST00000435070	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000435070	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000435070	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000435070	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000456847	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000456847	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000456847	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000456847	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000266679	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000266679	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000266679	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000266679	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
3UTR-3CDS	ENST00000550987	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
3UTR-3CDS	ENST00000550987	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
3UTR-3CDS	ENST00000550987	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
3UTR-intron	ENST00000550987	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000551516	ENST00000546373		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000551516	ENST00000551568		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000551516	ENST00000338356		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000551516	ENST00000549691		TCGA	RV	SARC	TCGA-DX-A23T-01A	CPSF6	chr12	69633486	+	CPM	chr12	69252851	-
Frame-shit	ENST00000299300	ENST00000005284		TCGA	RV	SARC	TCGA-DX-A6BG-01A	CCT2	chr12	69979304	+	CACNG3	chr16	24372673	+
Frame-shit	ENST00000544368	ENST00000005284		TCGA	RV	SARC	TCGA-DX-A6BG-01A	CCT2	chr12	69979304	+	CACNG3	chr16	24372673	+
intron-3CDS	ENST00000543146	ENST00000005284		TCGA	RV	SARC	TCGA-DX-A6BG-01A	CCT2	chr12	69979304	+	CACNG3	chr16	24372673	+
Frame-shit	ENST00000409731	ENST00000389048		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000409731	ENST00000431873		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000409731	ENST00000498037		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
Frame-shit	ENST00000345517	ENST00000389048		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000345517	ENST00000431873		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000345517	ENST00000498037		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
Frame-shit	ENST00000409918	ENST00000389048		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000409918	ENST00000431873		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000409918	ENST00000498037		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
Frame-shit	ENST00000409624	ENST00000389048		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000409624	ENST00000431873		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000409624	ENST00000498037		TCGA	RV	SARC	TCGA-IW-A3M6-01A	ACTG2	chr2	74128564	+	ALK	chr2	29449940	-
5CDS-3UTR	ENST00000403681	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-intron	ENST00000403681	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-intron	ENST00000403681	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-3UTR	ENST00000541363	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-intron	ENST00000541363	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-intron	ENST00000541363	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-3UTR	ENST00000393577	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-intron	ENST00000393577	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
5CDS-intron	ENST00000393577	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-3UTR	ENST00000393578	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000393578	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000393578	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-3UTR	ENST00000425208	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000425208	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000425208	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-3UTR	ENST00000536545	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000536545	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000536545	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-3UTR	ENST00000354636	ENST00000444631		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000354636	ENST00000336133		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
intron-intron	ENST00000354636	ENST00000552080		TCGA	RV	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	SARNP	chr12	56146624	-
Frame-shit	ENST00000409792	ENST00000442092		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
Frame-shit	ENST00000409792	ENST00000266022		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
Frame-shit	ENST00000409792	ENST00000443081		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
Frame-shit	ENST00000409792	ENST00000539992		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
5CDS-intron	ENST00000409792	ENST00000441115		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
5CDS-intron	ENST00000409792	ENST00000422955		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
5CDS-intron	ENST00000409792	ENST00000421682		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-3CDS	ENST00000492397	ENST00000442092		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-3CDS	ENST00000492397	ENST00000266022		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-3CDS	ENST00000492397	ENST00000443081		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-3CDS	ENST00000492397	ENST00000539992		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-intron	ENST00000492397	ENST00000441115		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-intron	ENST00000492397	ENST00000422955		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
intron-intron	ENST00000492397	ENST00000421682		TCGA	RV	SARC	TCGA-FX-A48G-01A	SETD2	chr3	47205344	-	RBM6	chr3	50112634	+
In-frame	ENST00000355192	ENST00000229195		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
In-frame	ENST00000355192	ENST00000418359		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5CDS-3UTR	ENST00000355192	ENST00000548230		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5CDS-5UTR	ENST00000355192	ENST00000551483		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-3CDS	ENST00000308259	ENST00000229195		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-3CDS	ENST00000308259	ENST00000418359		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-3UTR	ENST00000308259	ENST00000548230		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-5UTR	ENST00000308259	ENST00000551483		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
In-frame	ENST00000540804	ENST00000229195		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
In-frame	ENST00000540804	ENST00000418359		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5CDS-3UTR	ENST00000540804	ENST00000548230		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5CDS-5UTR	ENST00000540804	ENST00000551483		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-3CDS	ENST00000535664	ENST00000229195		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-3CDS	ENST00000535664	ENST00000418359		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-3UTR	ENST00000535664	ENST00000548230		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-5UTR	ENST00000535664	ENST00000551483		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
3UTR-3CDS	ENST00000538725	ENST00000229195		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
3UTR-3CDS	ENST00000538725	ENST00000418359		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
3UTR-3UTR	ENST00000538725	ENST00000548230		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
3UTR-5UTR	ENST00000538725	ENST00000551483		TCGA	RV	SARC	TCGA-DX-AB2H-01A	MSRB3	chr12	65672645	+	CNOT2	chr12	70729218	+
5UTR-5UTR	ENST00000228741	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000228741	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000228741	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000228741	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000228741	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-5UTR	ENST00000552142	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000552142	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000552142	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000552142	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
5UTR-intron	ENST00000552142	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000549529	ENST00000393330		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549529	ENST00000247829		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549529	ENST00000546561		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549529	ENST00000552128		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549529	ENST00000552786		TCGA	RV	SARC	TCGA-DX-AB2F-01A	ELK3	chr12	96588483	+	TSPAN8	chr12	71676599	-
intron-3CDS	ENST00000531326	ENST00000261172		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112893867	+	EPYC	chr12	91372039	-
In-frame	ENST00000392597	ENST00000261172		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112893867	+	EPYC	chr12	91372039	-
In-frame	ENST00000351677	ENST00000261172		TCGA	RV	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112893867	+	EPYC	chr12	91372039	-
5CDS-3UTR	ENST00000435070	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000435070	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000435070	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000435070	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000456847	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000456847	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000456847	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000456847	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000266679	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000266679	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000266679	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000266679	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
3UTR-3UTR	ENST00000550987	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
3UTR-3UTR	ENST00000550987	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
3UTR-intron	ENST00000550987	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
3UTR-intron	ENST00000550987	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000551516	ENST00000553221		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-3UTR	ENST00000551516	ENST00000257910		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000551516	ENST00000547992		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
5CDS-intron	ENST00000551516	ENST00000547472		TCGA	RV	SARC	TCGA-DX-A23Y-01A	CPSF6	chr12	69633486	+	TSPAN31	chr12	58140372	+
intron-3CDS	ENST00000553277	ENST00000546244		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000553277	ENST00000343810		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000553277	ENST00000550165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000553277	ENST00000547182		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000553277	ENST00000357123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
In-frame	ENST00000243077	ENST00000546244		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
In-frame	ENST00000243077	ENST00000343810		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
In-frame	ENST00000243077	ENST00000550165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
5CDS-5UTR	ENST00000243077	ENST00000547182		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
5CDS-5UTR	ENST00000243077	ENST00000357123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000338962	ENST00000546244		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000338962	ENST00000343810		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000338962	ENST00000550165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000338962	ENST00000547182		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000338962	ENST00000357123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000554174	ENST00000546244		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000554174	ENST00000343810		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000554174	ENST00000550165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000554174	ENST00000547182		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000554174	ENST00000357123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000553446	ENST00000546244		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000553446	ENST00000343810		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-3CDS	ENST00000553446	ENST00000550165		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000553446	ENST00000547182		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
intron-5UTR	ENST00000553446	ENST00000357123		TCGA	RV	SARC	TCGA-DX-AB2G-01A	LRP1	chr12	57604662	+	MCRS1	chr12	49953604	-
In-frame	ENST00000309311	ENST00000358026		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000344626		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000429416		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000541122		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000589677		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000444061		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000590574		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000413806		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000309311	ENST00000450717		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
5CDS-3UTR	ENST00000309311	ENST00000538456		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000358026		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000344626		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000429416		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000541122		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000589677		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000444061		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000590574		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000413806		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3CDS	ENST00000600720	ENST00000450717		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
intron-3UTR	ENST00000600720	ENST00000538456		TCGA	RV	SARC	TCGA-K1-A3PO-01A	EEF2	chr19	3982805	-	SMARCA4	chr19	11151983	+
In-frame	ENST00000334956	ENST00000339865		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000334956	ENST00000539466		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000334956	ENST00000527733		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000334956	ENST00000399455		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-3UTR	ENST00000334956	ENST00000305481		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
In-frame	ENST00000539723	ENST00000339865		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000539723	ENST00000539466		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000539723	ENST00000527733		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000539723	ENST00000399455		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-3UTR	ENST00000539723	ENST00000305481		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
In-frame	ENST00000550549	ENST00000339865		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000550549	ENST00000539466		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000550549	ENST00000527733		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-5UTR	ENST00000550549	ENST00000399455		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5CDS-3UTR	ENST00000550549	ENST00000305481		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-3CDS	ENST00000538608	ENST00000339865		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-5UTR	ENST00000538608	ENST00000539466		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-5UTR	ENST00000538608	ENST00000527733		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-5UTR	ENST00000538608	ENST00000399455		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-3UTR	ENST00000538608	ENST00000305481		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-3CDS	ENST00000526746	ENST00000339865		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-5UTR	ENST00000526746	ENST00000539466		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-5UTR	ENST00000526746	ENST00000527733		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-5UTR	ENST00000526746	ENST00000399455		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
intron-3UTR	ENST00000526746	ENST00000305481		TCGA	LD	SARC	TCGA-3B-A9HI-01A	PARVA	chr11	12399330	+	USP47	chr11	11974288	+
5UTR-5UTR	ENST00000299293	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000299293	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
5UTR-intron	ENST00000299293	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000299293	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000299293	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549921	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549921	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-intron	ENST00000549921	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549921	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549921	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000550389	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000550389	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-intron	ENST00000550389	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000550389	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000550389	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000397997	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000397997	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-intron	ENST00000397997	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000397997	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
intron-5UTR	ENST00000397997	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HJ-01A	FRS2	chr12	69931763	+	CDK4	chr12	58145519	-
5UTR-3CDS	ENST00000228438	ENST00000552032		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
5UTR-3CDS	ENST00000228438	ENST00000547771		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
5UTR-3CDS	ENST00000228438	ENST00000299350		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
5UTR-3CDS	ENST00000228438	ENST00000535034		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000538152	ENST00000552032		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000538152	ENST00000547771		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000538152	ENST00000299350		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000538152	ENST00000535034		TCGA	LD	SARC	TCGA-3B-A9HL-01A	CLEC2B	chr12	10021804	-	MYRFL	chr12	70345893	+
5CDS-3UTR	ENST00000398016	ENST00000553221		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000398016	ENST00000257910		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000398016	ENST00000547992		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-intron	ENST00000398016	ENST00000547472		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000359742	ENST00000553221		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000359742	ENST00000257910		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000359742	ENST00000547992		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-intron	ENST00000359742	ENST00000547472		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000286445	ENST00000553221		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000286445	ENST00000257910		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-3UTR	ENST00000286445	ENST00000547992		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
5CDS-intron	ENST00000286445	ENST00000547472		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000542021	ENST00000553221		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000542021	ENST00000257910		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000542021	ENST00000547992		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
intron-intron	ENST00000542021	ENST00000547472		TCGA	LD	SARC	TCGA-3B-A9HL-01A	GRIP1	chr12	66787988	-	TSPAN31	chr12	58139528	+
Frame-shit	ENST00000536525	ENST00000322886		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000536525	ENST00000416496		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000397909	ENST00000322886		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000397909	ENST00000416496		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000228327	ENST00000322886		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000228327	ENST00000416496		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000266692	ENST00000322886		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
Frame-shit	ENST00000266692	ENST00000416496		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
intron-3CDS	ENST00000552300	ENST00000322886		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
intron-3CDS	ENST00000552300	ENST00000416496		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
intron-3CDS	ENST00000541270	ENST00000322886		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
intron-3CDS	ENST00000541270	ENST00000416496		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NAV3	chr12	78591181	+	E2F7	chr12	77421918	-
5UTR-3CDS	ENST00000550187	ENST00000368972		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
5UTR-3CDS	ENST00000550187	ENST00000392644		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
5UTR-intron	ENST00000550187	ENST00000481850		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
intron-3CDS	ENST00000547157	ENST00000368972		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
intron-3CDS	ENST00000547157	ENST00000392644		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
intron-intron	ENST00000547157	ENST00000481850		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
Frame-shit	ENST00000327772	ENST00000368972		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
Frame-shit	ENST00000327772	ENST00000392644		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
5CDS-intron	ENST00000327772	ENST00000481850		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
intron-3CDS	ENST00000547986	ENST00000368972		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
intron-3CDS	ENST00000547986	ENST00000392644		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
intron-intron	ENST00000547986	ENST00000481850		TCGA	LD	SARC	TCGA-3B-A9HL-01A	NDUFA12	chr12	95387946	-	ARMC2	chr6	109249291	+
5UTR-3CDS	ENST00000393249	ENST00000398073		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000393249	ENST00000548823		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000393249	ENST00000547701		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000261183	ENST00000398073		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000261183	ENST00000548823		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000261183	ENST00000547701		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000393250	ENST00000398073		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000393250	ENST00000548823		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000393250	ENST00000547701		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000552178	ENST00000398073		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-3CDS	ENST00000552178	ENST00000548823		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
5UTR-5UTR	ENST00000552178	ENST00000547701		TCGA	LD	SARC	TCGA-3B-A9HL-01A	OSBPL8	chr12	76953177	-	CTDSP2	chr12	58223379	-
In-frame	ENST00000292205	ENST00000397898		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
In-frame	ENST00000292205	ENST00000332859		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5CDS-5UTR	ENST00000292205	ENST00000479153		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5CDS-5UTR	ENST00000292205	ENST00000411651		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5CDS-5UTR	ENST00000292205	ENST00000397893		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-3CDS	ENST00000368474	ENST00000397898		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-3CDS	ENST00000368474	ENST00000332859		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-5UTR	ENST00000368474	ENST00000479153		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-5UTR	ENST00000368474	ENST00000411651		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-5UTR	ENST00000368474	ENST00000397893		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5UTR-3CDS	ENST00000368471	ENST00000397898		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5UTR-3CDS	ENST00000368471	ENST00000332859		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5UTR-5UTR	ENST00000368471	ENST00000479153		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5UTR-5UTR	ENST00000368471	ENST00000411651		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
5UTR-5UTR	ENST00000368471	ENST00000397893		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-3CDS	ENST00000471068	ENST00000397898		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-3CDS	ENST00000471068	ENST00000332859		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-5UTR	ENST00000471068	ENST00000479153		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-5UTR	ENST00000471068	ENST00000411651		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
intron-5UTR	ENST00000471068	ENST00000397893		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ADAR	chr1	154600331	-	SUMO3	chr21	46229033	-
In-frame	ENST00000361866	ENST00000545145		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
In-frame	ENST00000361866	ENST00000392561		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
In-frame	ENST00000361866	ENST00000261741		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
5CDS-intron	ENST00000361866	ENST00000553232		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
intron-3CDS	ENST00000498614	ENST00000545145		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
intron-3CDS	ENST00000498614	ENST00000392561		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
intron-3CDS	ENST00000498614	ENST00000261741		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
intron-intron	ENST00000498614	ENST00000553232		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COL6A1	chr21	47414143	+	RBM19	chr12	114261126	-
Frame-shit	ENST00000357849	ENST00000548312		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
Frame-shit	ENST00000357849	ENST00000242607		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
Frame-shit	ENST00000357849	ENST00000356742		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
5CDS-5UTR	ENST00000357849	ENST00000439744		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
3UTR-3CDS	ENST00000517736	ENST00000548312		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
3UTR-3CDS	ENST00000517736	ENST00000242607		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
3UTR-3CDS	ENST00000517736	ENST00000356742		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
3UTR-5UTR	ENST00000517736	ENST00000439744		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
intron-3CDS	ENST00000519963	ENST00000548312		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
intron-3CDS	ENST00000519963	ENST00000242607		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
intron-3CDS	ENST00000519963	ENST00000356742		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
intron-5UTR	ENST00000519963	ENST00000439744		TCGA	LD	SARC	TCGA-3B-A9HO-01A	COPS5	chr8	67958047	-	HVCN1	chr12	111099253	-
5UTR-5UTR	ENST00000220763	ENST00000261401		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
5UTR-5UTR	ENST00000220763	ENST00000541050		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
5UTR-5UTR	ENST00000220763	ENST00000549384		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
5UTR-intron	ENST00000220763	ENST00000421578		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
5UTR-intron	ENST00000220763	ENST00000420959		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
5UTR-intron	ENST00000220763	ENST00000549772		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000529551	ENST00000261401		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000529551	ENST00000541050		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
intron-5UTR	ENST00000529551	ENST00000549384		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
intron-intron	ENST00000529551	ENST00000421578		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
intron-intron	ENST00000529551	ENST00000420959		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
intron-intron	ENST00000529551	ENST00000549772		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	CORO1C	chr12	109095099	-
5UTR-3CDS	ENST00000220763	ENST00000425217		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
5UTR-3CDS	ENST00000220763	ENST00000339824		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
5UTR-intron	ENST00000220763	ENST00000302438		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
5UTR-intron	ENST00000220763	ENST00000545002		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
intron-3CDS	ENST00000529551	ENST00000425217		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
intron-3CDS	ENST00000529551	ENST00000339824		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
intron-intron	ENST00000529551	ENST00000302438		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
intron-intron	ENST00000529551	ENST00000545002		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CPQ	chr8	97657630	+	KSR2	chr12	118298236	-
In-frame	ENST00000291568	ENST00000335512		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
In-frame	ENST00000291568	ENST00000539837		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000470987		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000291539		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398236		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398229		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398234		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398232		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398227		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398225		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000380328		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000328862		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000335440		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000398224		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
5CDS-3UTR	ENST00000291568	ENST00000349112		TCGA	LD	SARC	TCGA-3B-A9HO-01A	CSTB	chr21	45196085	-	PDE9A	chr21	44188298	+
Frame-shit	ENST00000320634	ENST00000324616		TCGA	LD	SARC	TCGA-3B-A9HO-01A	FAIM2	chr12	50281169	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000320634	ENST00000405531		TCGA	LD	SARC	TCGA-3B-A9HO-01A	FAIM2	chr12	50281169	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000320634	ENST00000398716		TCGA	LD	SARC	TCGA-3B-A9HO-01A	FAIM2	chr12	50281169	-	C12orf40	chr12	40110558	+
Frame-shit	ENST00000550890	ENST00000324616		TCGA	LD	SARC	TCGA-3B-A9HO-01A	FAIM2	chr12	50281169	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000550890	ENST00000405531		TCGA	LD	SARC	TCGA-3B-A9HO-01A	FAIM2	chr12	50281169	-	C12orf40	chr12	40110558	+
5CDS-intron	ENST00000550890	ENST00000398716		TCGA	LD	SARC	TCGA-3B-A9HO-01A	FAIM2	chr12	50281169	-	C12orf40	chr12	40110558	+
intron-3CDS	ENST00000407471	ENST00000400358		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000407471	ENST00000400359		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3UTR	ENST00000407471	ENST00000470591		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000435822	ENST00000400358		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000435822	ENST00000400359		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3UTR	ENST00000435822	ENST00000470591		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000490922	ENST00000400358		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000490922	ENST00000400359		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3UTR	ENST00000490922	ENST00000470591		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
Frame-shit	ENST00000404664	ENST00000400358		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
Frame-shit	ENST00000404664	ENST00000400359		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
5CDS-3UTR	ENST00000404664	ENST00000470591		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000447813	ENST00000400358		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000447813	ENST00000400359		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3UTR	ENST00000447813	ENST00000470591		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000402766	ENST00000400358		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3CDS	ENST00000402766	ENST00000400359		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
intron-3UTR	ENST00000402766	ENST00000470591		TCGA	LD	SARC	TCGA-3B-A9HO-01A	GUCD1	chr22	24951583	-	SGSM1	chr22	25202408	+
5CDS-intron	ENST00000228347	ENST00000398004		TCGA	LD	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106804738	+	SLC35E3	chr12	69187068	+
5CDS-3UTR	ENST00000228347	ENST00000538043		TCGA	LD	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106804738	+	SLC35E3	chr12	69187068	+
5CDS-intron	ENST00000539066	ENST00000398004		TCGA	LD	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106804738	+	SLC35E3	chr12	69187068	+
5CDS-3UTR	ENST00000539066	ENST00000538043		TCGA	LD	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106804738	+	SLC35E3	chr12	69187068	+
3UTR-intron	ENST00000549195	ENST00000398004		TCGA	LD	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106804738	+	SLC35E3	chr12	69187068	+
3UTR-3UTR	ENST00000549195	ENST00000538043		TCGA	LD	SARC	TCGA-3B-A9HO-01A	POLR3B	chr12	106804738	+	SLC35E3	chr12	69187068	+
In-frame	ENST00000376874	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000376874	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000376874	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000376874	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-intron	ENST00000376874	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
In-frame	ENST00000340724	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000340724	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000340724	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000340724	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-intron	ENST00000340724	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
Frame-shit	ENST00000544468	ENST00000257904		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000544468	ENST00000312990		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000544468	ENST00000549606		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000544468	ENST00000540325		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
5CDS-intron	ENST00000544468	ENST00000551888		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	CDK4	chr12	58142400	-
Frame-shit	ENST00000376874	ENST00000403593		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	SDSL	chr12	113866225	+
Frame-shit	ENST00000376874	ENST00000345635		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	SDSL	chr12	113866225	+
Frame-shit	ENST00000340724	ENST00000403593		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	SDSL	chr12	113866225	+
Frame-shit	ENST00000340724	ENST00000345635		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	SDSL	chr12	113866225	+
In-frame	ENST00000544468	ENST00000403593		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	SDSL	chr12	113866225	+
In-frame	ENST00000544468	ENST00000345635		TCGA	LD	SARC	TCGA-3B-A9HO-01A	RILPL1	chr12	123968727	-	SDSL	chr12	113866225	+
In-frame	ENST00000302190	ENST00000422113		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
In-frame	ENST00000302190	ENST00000389441		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
3UTR-3CDS	ENST00000520233	ENST00000422113		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
3UTR-3CDS	ENST00000520233	ENST00000389441		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
Frame-shit	ENST00000518385	ENST00000422113		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
Frame-shit	ENST00000518385	ENST00000389441		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
intron-3CDS	ENST00000522911	ENST00000422113		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
intron-3CDS	ENST00000522911	ENST00000389441		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
intron-3CDS	ENST00000519914	ENST00000422113		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
intron-3CDS	ENST00000519914	ENST00000389441		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SDC2	chr8	97506559	+	TMEM132D	chr12	129569247	-
Frame-shit	ENST00000382496	ENST00000230895		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SEMA5A	chr5	9054199	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000382496	ENST00000432074		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SEMA5A	chr5	9054199	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000382496	ENST00000510546		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SEMA5A	chr5	9054199	-	DAP	chr5	10683683	-
5UTR-3CDS	ENST00000330205	ENST00000456098		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-3CDS	ENST00000330205	ENST00000337514		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000330205	ENST00000481539		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000330205	ENST00000392904		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000330205	ENST00000424202		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000330205	ENST00000307046		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-3CDS	ENST00000291672	ENST00000456098		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-3CDS	ENST00000291672	ENST00000337514		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000291672	ENST00000481539		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000291672	ENST00000392904		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000291672	ENST00000424202		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
5UTR-intron	ENST00000291672	ENST00000307046		TCGA	LD	SARC	TCGA-3B-A9HO-01A	SPATC1L	chr21	47604270	-	IGF1	chr12	102813468	-
Frame-shit	ENST00000543727	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000543727	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000543727	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000543727	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000543727	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000543727	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000543727	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000550559	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000550559	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000550559	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000550559	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000550559	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000550559	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000550559	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000548851	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000548851	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000548851	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000548851	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000548851	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000548851	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000548851	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000454289	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000454289	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000454289	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000454289	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000454289	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000454289	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000454289	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000540550	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000540550	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000540550	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000540550	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000540550	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000540550	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000540550	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000323833	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000323833	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000323833	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000323833	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000323833	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000323833	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000323833	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000350762	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000350762	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000350762	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000350762	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000350762	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000350762	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000350762	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-3CDS	ENST00000497617	ENST00000539993		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-3CDS	ENST00000497617	ENST00000518698		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000497617	ENST00000349492		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000497617	ENST00000523686		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000497617	ENST00000348340		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000497617	ENST00000337103		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000497617	ENST00000325233		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58180945	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000543727	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000543727	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000543727	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
5CDS-intron	ENST00000543727	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000550559	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000550559	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000550559	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
5CDS-intron	ENST00000550559	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000548851	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000548851	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000548851	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
5CDS-intron	ENST00000548851	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000454289	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000454289	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000454289	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
5CDS-intron	ENST00000454289	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
intron-3CDS	ENST00000540550	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
intron-3CDS	ENST00000540550	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
intron-3CDS	ENST00000540550	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
intron-intron	ENST00000540550	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000323833	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000323833	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000323833	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
5CDS-intron	ENST00000323833	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000350762	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000350762	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000350762	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
5CDS-intron	ENST00000350762	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
3UTR-3CDS	ENST00000497617	ENST00000546373		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
3UTR-3CDS	ENST00000497617	ENST00000551568		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
3UTR-3CDS	ENST00000497617	ENST00000338356		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
3UTR-intron	ENST00000497617	ENST00000549691		TCGA	LD	SARC	TCGA-3B-A9HO-01A	TSFM	chr12	58186856	+	CPM	chr12	69265736	-
Frame-shit	ENST00000301042	ENST00000552032		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000301042	ENST00000547771		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000301042	ENST00000299350		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000301042	ENST00000535034		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000544117	ENST00000552032		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000544117	ENST00000547771		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000544117	ENST00000299350		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000544117	ENST00000535034		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000448928	ENST00000552032		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000448928	ENST00000547771		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000448928	ENST00000299350		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000448928	ENST00000535034		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000547026	ENST00000552032		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000547026	ENST00000547771		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000547026	ENST00000299350		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000547026	ENST00000535034		TCGA	LD	SARC	TCGA-3B-A9HO-01A	ZNF641	chr12	48741035	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000492622	ENST00000378434		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000492622	ENST00000345941		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000492622	ENST00000465365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000541916	ENST00000378434		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000541916	ENST00000345941		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000541916	ENST00000465365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000398316	ENST00000378434		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000398316	ENST00000345941		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000398316	ENST00000465365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	FNDC3A	chr13	49688867	+	LPAR6	chr13	48963948	-
Frame-shit	ENST00000396324	ENST00000360772		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
Frame-shit	ENST00000396324	ENST00000359169		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
Frame-shit	ENST00000396324	ENST00000360304		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000418370		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000578202		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000354792		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000346322		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000583087		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000475616		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000396324	ENST00000510775		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000452625	ENST00000360772		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000452625	ENST00000359169		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000452625	ENST00000360304		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000418370		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000578202		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000354792		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000346322		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000583087		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000475616		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000452625	ENST00000510775		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000576790	ENST00000360772		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000576790	ENST00000359169		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000576790	ENST00000360304		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000418370		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000578202		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000354792		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000346322		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000583087		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000475616		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000576790	ENST00000510775		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
Frame-shit	ENST00000300036	ENST00000360772		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
Frame-shit	ENST00000300036	ENST00000359169		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
Frame-shit	ENST00000300036	ENST00000360304		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000418370		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000578202		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000354792		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000346322		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000583087		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000475616		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
5CDS-intron	ENST00000300036	ENST00000510775		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-3CDS	ENST00000573908	ENST00000360772		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-3CDS	ENST00000573908	ENST00000359169		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-3CDS	ENST00000573908	ENST00000360304		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000418370		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000578202		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000354792		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000346322		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000583087		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000475616		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
intron-intron	ENST00000573908	ENST00000510775		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYH11	chr16	15809021	-	MYLK	chr3	123383105	-
In-frame	ENST00000360772	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000360772	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000360772	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000360772	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000360772	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000360772	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000359169	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000359169	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000359169	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000359169	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000359169	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000359169	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000360304	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000360304	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000360304	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000360304	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000360304	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000360304	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000418370	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000418370	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000418370	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000418370	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000418370	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000418370	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000578202	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000578202	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000578202	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000578202	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000578202	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000578202	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000354792	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000354792	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000354792	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000354792	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000354792	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000354792	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000346322	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000346322	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000346322	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000346322	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000346322	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000346322	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000583087	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000583087	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000583087	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000583087	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
Frame-shit	ENST00000583087	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000583087	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000475616	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000475616	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000475616	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000475616	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
In-frame	ENST00000475616	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000475616	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000510775	ENST00000360319		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000510775	ENST00000422373		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000510775	ENST00000369850		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000510775	ENST00000369856		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000510775	ENST00000344736		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-5UTR	ENST00000510775	ENST00000498491		TCGA	LD	SARC	TCGA-3B-A9HR-01A	MYLK	chr3	123339054	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000466266	ENST00000396324		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000466266	ENST00000452625		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000466266	ENST00000576790		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000466266	ENST00000300036		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-5UTR	ENST00000466266	ENST00000573908		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5UTR-3CDS	ENST00000428286	ENST00000396324		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5UTR-3UTR	ENST00000428286	ENST00000452625		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5UTR-3UTR	ENST00000428286	ENST00000576790		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5UTR-3UTR	ENST00000428286	ENST00000300036		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5UTR-5UTR	ENST00000428286	ENST00000573908		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
In-frame	ENST00000376718	ENST00000396324		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-3UTR	ENST00000376718	ENST00000452625		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-3UTR	ENST00000376718	ENST00000576790		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-3UTR	ENST00000376718	ENST00000300036		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-5UTR	ENST00000376718	ENST00000573908		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3CDS	ENST00000443509	ENST00000396324		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000443509	ENST00000452625		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000443509	ENST00000576790		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000443509	ENST00000300036		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-5UTR	ENST00000443509	ENST00000573908		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3CDS	ENST00000223609	ENST00000396324		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000223609	ENST00000452625		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000223609	ENST00000576790		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-3UTR	ENST00000223609	ENST00000300036		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-5UTR	ENST00000223609	ENST00000573908		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
In-frame	ENST00000376713	ENST00000396324		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-3UTR	ENST00000376713	ENST00000452625		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-3UTR	ENST00000376713	ENST00000576790		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-3UTR	ENST00000376713	ENST00000300036		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
5CDS-5UTR	ENST00000376713	ENST00000573908		TCGA	LD	SARC	TCGA-3B-A9HR-01A	PRUNE2	chr9	79520844	-	MYH11	chr16	15797980	-
intron-5UTR	ENST00000413465	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
intron-5UTR	ENST00000413465	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
intron-5UTR	ENST00000359597	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
intron-5UTR	ENST00000359597	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000269305	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000269305	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000455263	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000455263	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000420246	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000420246	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000445888	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
5UTR-5UTR	ENST00000445888	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
intron-5UTR	ENST00000574684	ENST00000377365		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
intron-5UTR	ENST00000574684	ENST00000523970		TCGA	LD	SARC	TCGA-3B-A9HR-01A	TP53	chr17	7590695	-	FAM196B	chr5	169311820	-
In-frame	ENST00000548058	ENST00000548256		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000548058	ENST00000551420		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000548058	ENST00000300209		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000548058	ENST00000552307		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000548058	ENST00000333012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
In-frame	ENST00000261206	ENST00000548256		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000261206	ENST00000551420		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-5UTR	ENST00000261206	ENST00000300209		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000261206	ENST00000552307		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
5CDS-3UTR	ENST00000261206	ENST00000333012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
intron-3CDS	ENST00000548324	ENST00000548256		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
intron-5UTR	ENST00000548324	ENST00000551420		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
intron-5UTR	ENST00000548324	ENST00000300209		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
intron-3UTR	ENST00000548324	ENST00000552307		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
intron-3UTR	ENST00000548324	ENST00000333012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ACSS3	chr12	81503483	+	METTL21B	chr12	58166800	+
In-frame	ENST00000505330	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000505330	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000505330	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000505330	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000505330	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000504381	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000504381	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000504381	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000504381	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000504381	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000507488	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000507488	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000507488	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000507488	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000507488	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000393221	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000393221	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000393221	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000393221	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000393221	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000533801	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000533801	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000533801	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000533801	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000533801	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000510168	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000510168	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000510168	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000510168	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000510168	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000508532	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000508532	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000508532	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000508532	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000508532	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000504948	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000504948	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000504948	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000504948	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000504948	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000513801	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000513801	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000513801	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000513801	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000513801	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000328560	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000328560	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000328560	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000328560	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000328560	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000428331	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000428331	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000428331	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000428331	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000428331	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000359644	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000359644	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000359644	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000359644	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000359644	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000422190	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
In-frame	ENST00000422190	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-3UTR	ENST00000422190	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-intron	ENST00000422190	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
5CDS-5UTR	ENST00000422190	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
intron-3CDS	ENST00000509150	ENST00000450466		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
intron-3CDS	ENST00000509150	ENST00000383233		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
intron-3UTR	ENST00000509150	ENST00000542162		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
intron-intron	ENST00000509150	ENST00000399707		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
intron-5UTR	ENST00000509150	ENST00000475185		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ATP2C1	chr3	130660543	+	TMEM241	chr18	20889708	-
intron-3CDS	ENST00000331471	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000331471	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000331471	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000488961	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000488961	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000488961	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000330891	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000330891	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000330891	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000553096	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000553096	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000553096	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000476098	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000476098	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000476098	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000266661	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000266661	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000266661	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000551160	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000551160	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000551160	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000393365	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000393365	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000393365	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000533674	ENST00000299300		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000533674	ENST00000544368		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
intron-3CDS	ENST00000533674	ENST00000543146		TCGA	LD	SARC	TCGA-3B-A9HS-01A	BEST3	chr12	70037469	-	CCT2	chr12	69995075	+
In-frame	ENST00000261951	ENST00000548058		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
In-frame	ENST00000261951	ENST00000261206		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000261951	ENST00000548324		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
In-frame	ENST00000393356	ENST00000548058		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
In-frame	ENST00000393356	ENST00000261206		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000393356	ENST00000548324		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
intron-3CDS	ENST00000502447	ENST00000548058		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
intron-3CDS	ENST00000502447	ENST00000261206		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
intron-intron	ENST00000502447	ENST00000548324		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179994242	+	ACSS3	chr12	81503339	+
5CDS-5UTR	ENST00000261951	ENST00000393330		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000261951	ENST00000247829		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000261951	ENST00000546561		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000261951	ENST00000552128		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000261951	ENST00000552786		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000393330		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000247829		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000546561		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000393356	ENST00000552128		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000393356	ENST00000552786		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
3UTR-5UTR	ENST00000502447	ENST00000393330		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
3UTR-5UTR	ENST00000502447	ENST00000247829		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
3UTR-5UTR	ENST00000502447	ENST00000546561		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
3UTR-intron	ENST00000502447	ENST00000552128		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
3UTR-5UTR	ENST00000502447	ENST00000552786		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CNOT6	chr5	179977117	+	TSPAN8	chr12	71551567	-
Frame-shit	ENST00000299886	ENST00000301634		TCGA	LD	SARC	TCGA-3B-A9HS-01A	COG1	chr17	71197452	+	TK1	chr17	76178767	-
Frame-shit	ENST00000299886	ENST00000405273		TCGA	LD	SARC	TCGA-3B-A9HS-01A	COG1	chr17	71197452	+	TK1	chr17	76178767	-
Frame-shit	ENST00000299886	ENST00000588734		TCGA	LD	SARC	TCGA-3B-A9HS-01A	COG1	chr17	71197452	+	TK1	chr17	76178767	-
Frame-shit	ENST00000299886	ENST00000590862		TCGA	LD	SARC	TCGA-3B-A9HS-01A	COG1	chr17	71197452	+	TK1	chr17	76178767	-
5CDS-intron	ENST00000299886	ENST00000590430		TCGA	LD	SARC	TCGA-3B-A9HS-01A	COG1	chr17	71197452	+	TK1	chr17	76178767	-
5CDS-5UTR	ENST00000398073	ENST00000393330		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000398073	ENST00000247829		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000398073	ENST00000546561		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000398073	ENST00000552128		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000398073	ENST00000552786		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000548823	ENST00000393330		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000548823	ENST00000247829		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000548823	ENST00000546561		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-intron	ENST00000548823	ENST00000552128		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
5CDS-5UTR	ENST00000548823	ENST00000552786		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547701	ENST00000393330		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547701	ENST00000247829		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547701	ENST00000546561		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
intron-intron	ENST00000547701	ENST00000552128		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
intron-5UTR	ENST00000547701	ENST00000552786		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTDSP2	chr12	58240155	-	TSPAN8	chr12	71551567	-
3UTR-3CDS	ENST00000372621	ENST00000372591		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTPS1	chr1	41475926	+	FOXO6	chr1	41847288	+
3UTR-3CDS	ENST00000541520	ENST00000372591		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTPS1	chr1	41475926	+	FOXO6	chr1	41847288	+
intron-3CDS	ENST00000475060	ENST00000372591		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTPS1	chr1	41475926	+	FOXO6	chr1	41847288	+
intron-3CDS	ENST00000543104	ENST00000372591		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTPS1	chr1	41475926	+	FOXO6	chr1	41847288	+
3UTR-3CDS	ENST00000372616	ENST00000372591		TCGA	LD	SARC	TCGA-3B-A9HS-01A	CTPS1	chr1	41475926	+	FOXO6	chr1	41847288	+
Frame-shit	ENST00000393432	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
Frame-shit	ENST00000393432	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000442819	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000442819	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000356731	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000356731	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000329433	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000329433	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000510411	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
In-frame	ENST00000510411	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000511300	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000511300	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000524180	ENST00000341500		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
intron-3CDS	ENST00000524180	ENST00000302850		TCGA	LD	SARC	TCGA-3B-A9HS-01A	HNRNPH1	chr5	179044985	-	INSR	chr19	7184648	-
intron-intron	ENST00000553277	ENST00000604900		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553277	ENST00000412716		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553277	ENST00000449723		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553277	ENST00000549555		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553277	ENST00000439799		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000553277	ENST00000425012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553277	ENST00000549732		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000553277	ENST00000551534		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553277	ENST00000551313		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-intron	ENST00000243077	ENST00000604900		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-3UTR	ENST00000243077	ENST00000412716		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-3UTR	ENST00000243077	ENST00000449723		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-3UTR	ENST00000243077	ENST00000549555		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-3UTR	ENST00000243077	ENST00000439799		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-intron	ENST00000243077	ENST00000425012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-3UTR	ENST00000243077	ENST00000549732		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-intron	ENST00000243077	ENST00000551534		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
5CDS-3UTR	ENST00000243077	ENST00000551313		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000338962	ENST00000604900		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000338962	ENST00000412716		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000338962	ENST00000449723		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000338962	ENST00000549555		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000338962	ENST00000439799		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000338962	ENST00000425012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000338962	ENST00000549732		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000338962	ENST00000551534		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000338962	ENST00000551313		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000554174	ENST00000604900		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000554174	ENST00000412716		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000554174	ENST00000449723		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000554174	ENST00000549555		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000554174	ENST00000439799		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000554174	ENST00000425012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000554174	ENST00000549732		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000554174	ENST00000551534		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000554174	ENST00000551313		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000553446	ENST00000604900		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553446	ENST00000412716		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553446	ENST00000449723		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553446	ENST00000549555		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553446	ENST00000439799		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000553446	ENST00000425012		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553446	ENST00000549732		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-intron	ENST00000553446	ENST00000551534		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
intron-3UTR	ENST00000553446	ENST00000551313		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LRP1	chr12	57569709	+	DAZAP2	chr12	51636251	+
In-frame	ENST00000228740	ENST00000421865		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
5CDS-intron	ENST00000228740	ENST00000498257		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
intron-3CDS	ENST00000552789	ENST00000421865		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
intron-intron	ENST00000552789	ENST00000498257		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
intron-3CDS	ENST00000413268	ENST00000421865		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
intron-intron	ENST00000413268	ENST00000498257		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
intron-3CDS	ENST00000548375	ENST00000421865		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
intron-intron	ENST00000548375	ENST00000498257		TCGA	LD	SARC	TCGA-3B-A9HS-01A	LTA4H	chr12	96429139	-	LAMA2	chr6	129571257	+
5UTR-3CDS	ENST00000549405	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
5UTR-intron	ENST00000549405	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000393205	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000393205	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000332156	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000332156	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000604798	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000604798	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000552808	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000552808	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000548651	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000548651	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000552435	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000552435	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-3CDS	ENST00000602941	ENST00000248306		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
intron-intron	ENST00000602941	ENST00000547357		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MGAT4C	chr12	87232443	-	METTL25	chr12	82871060	+
5UTR-3CDS	ENST00000451457	ENST00000253778		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MTFR2	chr6	136571402	-	GFPT2	chr5	179765600	-
5UTR-intron	ENST00000451457	ENST00000520165		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MTFR2	chr6	136571402	-	GFPT2	chr5	179765600	-
intron-3CDS	ENST00000420702	ENST00000253778		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MTFR2	chr6	136571402	-	GFPT2	chr5	179765600	-
intron-intron	ENST00000420702	ENST00000520165		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MTFR2	chr6	136571402	-	GFPT2	chr5	179765600	-
intron-3CDS	ENST00000445767	ENST00000253778		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MTFR2	chr6	136571402	-	GFPT2	chr5	179765600	-
intron-intron	ENST00000445767	ENST00000520165		TCGA	LD	SARC	TCGA-3B-A9HS-01A	MTFR2	chr6	136571402	-	GFPT2	chr5	179765600	-
5UTR-5UTR	ENST00000261182	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000261182	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000261182	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000393263	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000393263	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000393263	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000431879	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000431879	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000431879	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000547773	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000547773	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000547773	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000544816	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000544816	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000544816	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000542344	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000542344	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000542344	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000535020	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000535020	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000535020	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000549596	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000549596	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000549596	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
intron-5UTR	ENST00000547993	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
intron-5UTR	ENST00000547993	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
intron-intron	ENST00000547993	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000552342	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000552342	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000552342	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000548044	ENST00000228741		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-5UTR	ENST00000548044	ENST00000552142		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
5UTR-intron	ENST00000548044	ENST00000549529		TCGA	LD	SARC	TCGA-3B-A9HS-01A	NAP1L1	chr12	76478347	-	ELK3	chr12	96617343	+
Frame-shit	ENST00000321442	ENST00000261267		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
5CDS-intron	ENST00000321442	ENST00000549690		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
5CDS-intron	ENST00000321442	ENST00000548839		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
intron-3CDS	ENST00000515791	ENST00000261267		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
intron-intron	ENST00000515791	ENST00000549690		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
intron-intron	ENST00000515791	ENST00000548839		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
Frame-shit	ENST00000502393	ENST00000261267		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
5CDS-intron	ENST00000502393	ENST00000549690		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
5CDS-intron	ENST00000502393	ENST00000548839		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SFXN1	chr5	174919270	+	LYZ	chr12	69746000	+
In-frame	ENST00000519560	ENST00000360453		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
Frame-shit	ENST00000519560	ENST00000394320		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000519560	ENST00000461780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000519560	ENST00000309241		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000519560	ENST00000403750		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
In-frame	ENST00000332966	ENST00000360453		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
Frame-shit	ENST00000332966	ENST00000394320		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000332966	ENST00000461780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000332966	ENST00000309241		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000332966	ENST00000403750		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
In-frame	ENST00000404867	ENST00000360453		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
Frame-shit	ENST00000404867	ENST00000394320		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000404867	ENST00000461780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000404867	ENST00000309241		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5CDS-intron	ENST00000404867	ENST00000403750		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5UTR-3CDS	ENST00000521130	ENST00000360453		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5UTR-3CDS	ENST00000521130	ENST00000394320		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5UTR-intron	ENST00000521130	ENST00000461780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5UTR-intron	ENST00000521130	ENST00000309241		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5UTR-intron	ENST00000521130	ENST00000403750		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SLIT3	chr5	168671709	-	PPARGC1B	chr5	149225323	+
5UTR-3CDS	ENST00000265295	ENST00000354546		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
5UTR-3CDS	ENST00000265295	ENST00000523714		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
5UTR-3CDS	ENST00000265295	ENST00000356496		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
5UTR-3CDS	ENST00000265295	ENST00000377751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
5UTR-3CDS	ENST00000265295	ENST00000521512		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
5UTR-intron	ENST00000265295	ENST00000519610		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
3UTR-3CDS	ENST00000510751	ENST00000354546		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
3UTR-3CDS	ENST00000510751	ENST00000523714		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
3UTR-3CDS	ENST00000510751	ENST00000356496		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
3UTR-3CDS	ENST00000510751	ENST00000377751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
3UTR-3CDS	ENST00000510751	ENST00000521512		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
3UTR-intron	ENST00000510751	ENST00000519610		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	ANXA6	chr5	150481068	-
5UTR-5UTR	ENST00000265295	ENST00000504320		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	SCGB3A2	chr5	147261009	+
5UTR-3UTR	ENST00000265295	ENST00000514688		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	SCGB3A2	chr5	147261009	+
5UTR-3UTR	ENST00000265295	ENST00000296694		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	SCGB3A2	chr5	147261009	+
3UTR-5UTR	ENST00000510751	ENST00000504320		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	SCGB3A2	chr5	147261009	+
3UTR-3UTR	ENST00000510751	ENST00000514688		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	SCGB3A2	chr5	147261009	+
3UTR-3UTR	ENST00000510751	ENST00000296694		TCGA	LD	SARC	TCGA-3B-A9HS-01A	SPDL1	chr5	169010893	+	SCGB3A2	chr5	147261009	+
Frame-shit	ENST00000301634	ENST00000520367		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000301634	ENST00000518137		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000523999		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000323854		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000522751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000520284		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000517795		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000518907		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000521847		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000518644		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000518901		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000301634	ENST00000517295		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000405273	ENST00000520367		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000405273	ENST00000518137		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000523999		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000323854		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000522751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000520284		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000517795		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000518907		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000521847		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000518644		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000518901		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000405273	ENST00000517295		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000588734	ENST00000520367		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000588734	ENST00000518137		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000523999		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000323854		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000522751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000520284		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000517795		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000518907		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000521847		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000518644		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000518901		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000588734	ENST00000517295		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000590862	ENST00000520367		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000590862	ENST00000518137		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000523999		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000323854		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000522751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000520284		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000517795		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000518907		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000521847		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000518644		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000518901		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590862	ENST00000517295		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000590430	ENST00000520367		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
Frame-shit	ENST00000590430	ENST00000518137		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000523999		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000323854		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000522751		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000520284		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000517795		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000518907		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000521847		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000518644		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000518901		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5CDS-intron	ENST00000590430	ENST00000517295		TCGA	LD	SARC	TCGA-3B-A9HS-01A	TK1	chr17	76181136	-	ENDOV	chr17	78409933	+
5UTR-intron	ENST00000252840	ENST00000405876		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-intron	ENST00000252840	ENST00000312777		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-3UTR	ENST00000252840	ENST00000550780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-intron	ENST00000414706	ENST00000405876		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-intron	ENST00000414706	ENST00000312777		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-3UTR	ENST00000414706	ENST00000550780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-intron	ENST00000439035	ENST00000405876		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-intron	ENST00000439035	ENST00000312777		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
5UTR-3UTR	ENST00000439035	ENST00000550780		TCGA	LD	SARC	TCGA-3B-A9HS-01A	ZNF557	chr19	7070664	+	TCHP	chr12	110418710	+
intron-3CDS	ENST00000425427	ENST00000297109		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000425427	ENST00000523198		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000425427	ENST00000440364		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-intron	ENST00000425427	ENST00000426761		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3CDS	ENST00000297107	ENST00000297109		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000297107	ENST00000523198		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000297107	ENST00000440364		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-intron	ENST00000297107	ENST00000426761		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3CDS	ENST00000377661	ENST00000297109		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000377661	ENST00000523198		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000377661	ENST00000440364		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-intron	ENST00000377661	ENST00000426761		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3CDS	ENST00000519544	ENST00000297109		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000519544	ENST00000523198		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000519544	ENST00000440364		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-intron	ENST00000519544	ENST00000426761		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3CDS	ENST00000377657	ENST00000297109		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000377657	ENST00000523198		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-3UTR	ENST00000377657	ENST00000440364		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-intron	ENST00000377657	ENST00000426761		TCGA	LD	SARC	TCGA-3B-A9HU-01A	GALNT10	chr5	153597709	+	SAP30L	chr5	153832962	+
intron-intron	ENST00000375820	ENST00000259455		TCGA	LD	SARC	TCGA-3B-A9HV-01A	COL4A1	chr13	110839551	-	GABBR2	chr9	101072066	-
intron-intron	ENST00000375820	ENST00000477471		TCGA	LD	SARC	TCGA-3B-A9HV-01A	COL4A1	chr13	110839551	-	GABBR2	chr9	101072066	-
intron-intron	ENST00000543140	ENST00000259455		TCGA	LD	SARC	TCGA-3B-A9HV-01A	COL4A1	chr13	110839551	-	GABBR2	chr9	101072066	-
intron-intron	ENST00000543140	ENST00000477471		TCGA	LD	SARC	TCGA-3B-A9HV-01A	COL4A1	chr13	110839551	-	GABBR2	chr9	101072066	-
intron-intron	ENST00000467182	ENST00000259455		TCGA	LD	SARC	TCGA-3B-A9HV-01A	COL4A1	chr13	110839551	-	GABBR2	chr9	101072066	-
intron-intron	ENST00000467182	ENST00000477471		TCGA	LD	SARC	TCGA-3B-A9HV-01A	COL4A1	chr13	110839551	-	GABBR2	chr9	101072066	-
intron-3CDS	ENST00000288985	ENST00000265659		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000288985	ENST00000375241		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000288985	ENST00000375240		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000288985	ENST00000463569		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000288985	ENST00000375236		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000288985	ENST00000375242		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-intron	ENST00000288985	ENST00000481149		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000466840	ENST00000265659		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000466840	ENST00000375241		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000466840	ENST00000375240		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000466840	ENST00000463569		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000466840	ENST00000375236		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000466840	ENST00000375242		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-intron	ENST00000466840	ENST00000481149		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000437817	ENST00000265659		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000437817	ENST00000375241		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000437817	ENST00000375240		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000437817	ENST00000463569		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000437817	ENST00000375236		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-3CDS	ENST00000437817	ENST00000375242		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
intron-intron	ENST00000437817	ENST00000481149		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
In-frame	ENST00000407474	ENST00000265659		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
In-frame	ENST00000407474	ENST00000375241		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
In-frame	ENST00000407474	ENST00000375240		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
In-frame	ENST00000407474	ENST00000463569		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
In-frame	ENST00000407474	ENST00000375236		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
In-frame	ENST00000407474	ENST00000375242		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
5CDS-intron	ENST00000407474	ENST00000481149		TCGA	LD	SARC	TCGA-3B-A9HV-01A	ERCC6L2	chr9	98766983	+	CDC14B	chr9	99304174	-
5UTR-3CDS	ENST00000320248	ENST00000262113		TCGA	LD	SARC	TCGA-3B-A9HV-01A	KBTBD11	chr8	1922101	+	MYOM2	chr8	2063752	+
5UTR-3CDS	ENST00000320248	ENST00000523438		TCGA	LD	SARC	TCGA-3B-A9HV-01A	KBTBD11	chr8	1922101	+	MYOM2	chr8	2063752	+
5UTR-intron	ENST00000320248	ENST00000520298		TCGA	LD	SARC	TCGA-3B-A9HV-01A	KBTBD11	chr8	1922101	+	MYOM2	chr8	2063752	+
intron-3CDS	ENST00000378300	ENST00000380262		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3CDS	ENST00000378300	ENST00000563694		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3UTR	ENST00000378300	ENST00000380255		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3UTR	ENST00000378300	ENST00000565740		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
In-frame	ENST00000378292	ENST00000380262		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
Frame-shit	ENST00000378292	ENST00000563694		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000378292	ENST00000380255		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000378292	ENST00000565740		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3CDS	ENST00000329305	ENST00000380262		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3CDS	ENST00000329305	ENST00000563694		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3UTR	ENST00000329305	ENST00000380255		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3UTR	ENST00000329305	ENST00000565740		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3CDS	ENST00000360958	ENST00000380262		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3CDS	ENST00000360958	ENST00000563694		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3UTR	ENST00000360958	ENST00000380255		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
intron-3UTR	ENST00000360958	ENST00000565740		TCGA	LD	SARC	TCGA-3B-A9HV-01A	TPM2	chr9	35685061	-	CNTROB	chr17	7852703	+
5CDS-5UTR	ENST00000348943	ENST00000339302		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-5UTR	ENST00000348943	ENST00000430298		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-intron	ENST00000348943	ENST00000397755		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-intron	ENST00000348943	ENST00000596883		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-intron	ENST00000348943	ENST00000397759		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-5UTR	ENST00000325495	ENST00000339302		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-5UTR	ENST00000325495	ENST00000430298		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-intron	ENST00000325495	ENST00000397755		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-intron	ENST00000325495	ENST00000596883		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
5CDS-intron	ENST00000325495	ENST00000397759		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
intron-5UTR	ENST00000602219	ENST00000339302		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
intron-5UTR	ENST00000602219	ENST00000430298		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
intron-intron	ENST00000602219	ENST00000397755		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
intron-intron	ENST00000602219	ENST00000596883		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
intron-intron	ENST00000602219	ENST00000397759		TCGA	LD	SARC	TCGA-3B-A9HX-01A	HNRNPM	chr19	8520458	+	ZNF788	chr19	12222061	+
Frame-shit	ENST00000593829	ENST00000262637		TCGA	LD	SARC	TCGA-3B-A9HX-01A	LSM4	chr19	18433828	-	OVOL3	chr19	36602271	+
5CDS-intron	ENST00000593829	ENST00000586670		TCGA	LD	SARC	TCGA-3B-A9HX-01A	LSM4	chr19	18433828	-	OVOL3	chr19	36602271	+
Frame-shit	ENST00000252816	ENST00000262637		TCGA	LD	SARC	TCGA-3B-A9HX-01A	LSM4	chr19	18433828	-	OVOL3	chr19	36602271	+
5CDS-intron	ENST00000252816	ENST00000586670		TCGA	LD	SARC	TCGA-3B-A9HX-01A	LSM4	chr19	18433828	-	OVOL3	chr19	36602271	+
intron-3CDS	ENST00000253048	ENST00000330915		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47614152	-	KANK3	chr19	8389980	-
intron-3CDS	ENST00000253048	ENST00000593649		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47614152	-	KANK3	chr19	8389980	-
intron-3CDS	ENST00000594019	ENST00000330915		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47614152	-	KANK3	chr19	8389980	-
intron-3CDS	ENST00000594019	ENST00000593649		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZC3H4	chr19	47614152	-	KANK3	chr19	8389980	-
5UTR-3CDS	ENST00000307658	ENST00000404338		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF17	chr19	57922774	+	ARHGAP35	chr19	47491246	+
5UTR-intron	ENST00000307658	ENST00000598548		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF17	chr19	57922774	+	ARHGAP35	chr19	47491246	+
Frame-shit	ENST00000601808	ENST00000404338		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF17	chr19	57922774	+	ARHGAP35	chr19	47491246	+
5CDS-intron	ENST00000601808	ENST00000598548		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF17	chr19	57922774	+	ARHGAP35	chr19	47491246	+
3UTR-3CDS	ENST00000595206	ENST00000404338		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF17	chr19	57922774	+	ARHGAP35	chr19	47491246	+
3UTR-intron	ENST00000595206	ENST00000598548		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF17	chr19	57922774	+	ARHGAP35	chr19	47491246	+
In-frame	ENST00000196489	ENST00000252699		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF416	chr19	58089425	-	ACTN4	chr19	39191240	+
In-frame	ENST00000196489	ENST00000424234		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF416	chr19	58089425	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000196489	ENST00000390009		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF416	chr19	58089425	-	ACTN4	chr19	39191240	+
5CDS-intron	ENST00000196489	ENST00000497637		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF416	chr19	58089425	-	ACTN4	chr19	39191240	+
5CDS-5UTR	ENST00000392149	ENST00000311044		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-intron	ENST00000392149	ENST00000425453		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-5UTR	ENST00000316950	ENST00000311044		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-intron	ENST00000316950	ENST00000425453		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5UTR-5UTR	ENST00000392150	ENST00000311044		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5UTR-intron	ENST00000392150	ENST00000425453		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-5UTR	ENST00000592490	ENST00000311044		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-intron	ENST00000592490	ENST00000425453		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-5UTR	ENST00000589833	ENST00000311044		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5CDS-intron	ENST00000589833	ENST00000425453		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5UTR-5UTR	ENST00000591073	ENST00000311044		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
5UTR-intron	ENST00000591073	ENST00000425453		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF569	chr19	37935809	-	ZNF497	chr19	58869951	-
intron-3UTR	ENST00000419318	ENST00000593968		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
intron-5UTR	ENST00000419318	ENST00000316401		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
intron-intron	ENST00000419318	ENST00000597824		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5CDS-3UTR	ENST00000430385	ENST00000593968		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5CDS-5UTR	ENST00000430385	ENST00000316401		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5CDS-intron	ENST00000430385	ENST00000597824		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5CDS-3UTR	ENST00000595766	ENST00000593968		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5CDS-5UTR	ENST00000595766	ENST00000316401		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5CDS-intron	ENST00000595766	ENST00000597824		TCGA	LD	SARC	TCGA-3B-A9HX-01A	ZNF799	chr19	12511882	-	SIGLECL1	chr19	51767137	+
5UTR-3CDS	ENST00000263733	ENST00000367635		TCGA	LD	SARC	TCGA-3B-A9HY-01A	FAM20B	chr1	178995233	+	RALGPS2	chr1	178858777	+
5UTR-3CDS	ENST00000263733	ENST00000367634		TCGA	LD	SARC	TCGA-3B-A9HY-01A	FAM20B	chr1	178995233	+	RALGPS2	chr1	178858777	+
5UTR-3UTR	ENST00000263733	ENST00000477383		TCGA	LD	SARC	TCGA-3B-A9HY-01A	FAM20B	chr1	178995233	+	RALGPS2	chr1	178858777	+
intron-3CDS	ENST00000221419	ENST00000591517		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
intron-intron	ENST00000221419	ENST00000586296		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
intron-intron	ENST00000221419	ENST00000589130		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
intron-intron	ENST00000221419	ENST00000396857		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
intron-3UTR	ENST00000221419	ENST00000423454		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
intron-intron	ENST00000221419	ENST00000589002		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
5UTR-3CDS	ENST00000600873	ENST00000591517		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
5UTR-intron	ENST00000600873	ENST00000586296		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
5UTR-intron	ENST00000600873	ENST00000589130		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
5UTR-intron	ENST00000600873	ENST00000396857		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
5UTR-3UTR	ENST00000600873	ENST00000423454		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
5UTR-intron	ENST00000600873	ENST00000589002		TCGA	LD	SARC	TCGA-3B-A9HY-01A	HNRNPL	chr19	39342936	-	MAP4K1	chr19	39088024	-
In-frame	ENST00000368802	ENST00000435363		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
In-frame	ENST00000368802	ENST00000425700		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000485543		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000411583		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000548530		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000550398		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000487226		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000449788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000546399		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000494210		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000445788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000375177		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000548301		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368802	ENST00000488817		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
In-frame	ENST00000368805	ENST00000435363		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
In-frame	ENST00000368805	ENST00000425700		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000485543		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000411583		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000548530		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000550398		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000487226		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000449788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000546399		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000494210		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000445788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000375177		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000548301		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000368805	ENST00000488817		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
Frame-shit	ENST00000435970	ENST00000435363		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
Frame-shit	ENST00000435970	ENST00000425700		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000485543		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000411583		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000548530		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000550398		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000487226		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000449788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000546399		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000494210		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000445788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000375177		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000548301		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000435970	ENST00000488817		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
In-frame	ENST00000358835	ENST00000435363		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
In-frame	ENST00000358835	ENST00000425700		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000485543		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000411583		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000548530		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000550398		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000487226		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000449788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000546399		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000494210		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000445788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000375177		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000548301		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
5CDS-intron	ENST00000358835	ENST00000488817		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-3CDS	ENST00000462119	ENST00000435363		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-3CDS	ENST00000462119	ENST00000425700		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000485543		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000411583		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000548530		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000550398		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000487226		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000449788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000546399		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000494210		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000445788		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000375177		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000548301		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
intron-intron	ENST00000462119	ENST00000488817		TCGA	LD	SARC	TCGA-3B-A9HZ-01A	REV3L	chr6	111726673	-	C4B	chr6	32002291	+
In-frame	ENST00000368594	ENST00000252936		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000368594	ENST00000417178		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000368594	ENST00000368563		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000368594	ENST00000368562		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000368594	ENST00000543663		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000368594	ENST00000470829		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
In-frame	ENST00000368593	ENST00000252936		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000368593	ENST00000417178		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000368593	ENST00000368563		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000368593	ENST00000368562		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000368593	ENST00000543663		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-5UTR	ENST00000368593	ENST00000470829		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
intron-3CDS	ENST00000487614	ENST00000252936		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
intron-intron	ENST00000487614	ENST00000417178		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
intron-5UTR	ENST00000487614	ENST00000368563		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
intron-intron	ENST00000487614	ENST00000368562		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
intron-intron	ENST00000487614	ENST00000543663		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
intron-5UTR	ENST00000487614	ENST00000470829		TCGA	LD	SARC	TCGA-3B-A9I1-01A	INPP5A	chr10	134421460	+	TUBGCP2	chr10	135116484	-
5CDS-intron	ENST00000373504	ENST00000373583		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373573		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373589		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000429103		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373571		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000439122		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373560		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373559		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373561		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000478743		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373556		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373504	ENST00000373554		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373583		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373573		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373589		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000429103		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373571		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000439122		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373560		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373559		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373561		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000478743		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373556		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373502	ENST00000373554		TCGA	LD	SARC	TCGA-3B-A9I3-01A	CHIC1	chrX	72804408	+	HDAC8	chrX	71571688	-
In-frame	ENST00000432176	ENST00000406890		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
5CDS-intron	ENST00000432176	ENST00000404369		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
In-frame	ENST00000409923	ENST00000406890		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
5CDS-intron	ENST00000409923	ENST00000404369		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
intron-3CDS	ENST00000498833	ENST00000406890		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
intron-intron	ENST00000498833	ENST00000404369		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
intron-3CDS	ENST00000409763	ENST00000406890		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
intron-intron	ENST00000409763	ENST00000404369		TCGA	LD	SARC	TCGA-3B-A9I3-01A	FAM126A	chr7	23015829	-	STEAP1B	chr7	22459455	-
5UTR-3CDS	ENST00000488324	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5UTR-intron	ENST00000488324	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
In-frame	ENST00000399199	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000399199	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
Frame-shit	ENST00000274853	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-intron	ENST00000274853	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000498031	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000498031	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000444206	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000444206	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000438815	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438815	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000552716	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000552716	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000491628	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000491628	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000435929	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435929	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000412189	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000412189	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000548255	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000548255	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000493833	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000493833	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000438945	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000438945	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000455935	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000455935	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000551049	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551049	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000472334	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000472334	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000451544	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000451544	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000437121	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000437121	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000551034	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551034	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000465704	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000465704	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000383573	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000383573	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000400554	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000400554	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000550073	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000550073	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000492746	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000492746	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000449705	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000449705	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000443517	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000443517	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000551784	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000551784	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000487859	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000487859	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-3CDS	ENST00000435006	ENST00000375244		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000451343		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000375247		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000479795		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000433037		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000549232		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000383159		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000489006		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000469250		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000440248		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000550212		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000548649		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000424718		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000475986		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000550539		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000471059		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000551808		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000548628		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000549652		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000553092		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000552665		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000465958		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000546684		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000464376		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000552149		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
intron-intron	ENST00000435006	ENST00000551201		TCGA	LD	SARC	TCGA-3B-A9I3-01A	PPP1R18	chr6	30652185	-	TNXB	chr6	32021488	-
5CDS-5UTR	ENST00000229195	ENST00000546373		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000229195	ENST00000551568		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000229195	ENST00000338356		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000229195	ENST00000549691		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000418359	ENST00000546373		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000418359	ENST00000551568		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000418359	ENST00000338356		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000418359	ENST00000549691		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000548230	ENST00000546373		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000548230	ENST00000551568		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000548230	ENST00000338356		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-intron	ENST00000548230	ENST00000549691		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000551483	ENST00000546373		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000551483	ENST00000551568		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000551483	ENST00000338356		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
intron-intron	ENST00000551483	ENST00000549691		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70672054	+	CPM	chr12	69326620	-
5UTR-3CDS	ENST00000229195	ENST00000308127		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3CDS	ENST00000229195	ENST00000308298		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3CDS	ENST00000229195	ENST00000376757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3UTR	ENST00000229195	ENST00000532181		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3CDS	ENST00000418359	ENST00000308127		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3CDS	ENST00000418359	ENST00000308298		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3CDS	ENST00000418359	ENST00000376757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-3UTR	ENST00000418359	ENST00000532181		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3CDS	ENST00000548230	ENST00000308127		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3CDS	ENST00000548230	ENST00000308298		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3CDS	ENST00000548230	ENST00000376757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3UTR	ENST00000548230	ENST00000532181		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3CDS	ENST00000551483	ENST00000308127		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3CDS	ENST00000551483	ENST00000308298		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3CDS	ENST00000551483	ENST00000376757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
intron-3UTR	ENST00000551483	ENST00000532181		TCGA	LD	SARC	TCGA-3R-A8YX-01A	CNOT2	chr12	70637260	+	SSH3	chr11	67074842	+
5UTR-5UTR	ENST00000457030	ENST00000370758		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000457030	ENST00000370756		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000457030	ENST00000370757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000330010	ENST00000370758		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000330010	ENST00000370756		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000330010	ENST00000370757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000294624	ENST00000370758		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000294624	ENST00000370756		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000294624	ENST00000370757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000334785	ENST00000370758		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000334785	ENST00000370756		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
5UTR-5UTR	ENST00000334785	ENST00000370757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
intron-5UTR	ENST00000480732	ENST00000370758		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
intron-5UTR	ENST00000480732	ENST00000370756		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
intron-5UTR	ENST00000480732	ENST00000370757		TCGA	LD	SARC	TCGA-3R-A8YX-01A	NEXN	chr1	78354444	+	PTGFR	chr1	78958357	+
In-frame	ENST00000356136	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
In-frame	ENST00000528420	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
5UTR-3CDS	ENST00000533454	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
5UTR-3CDS	ENST00000531818	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
5UTR-3CDS	ENST00000532130	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
5UTR-3CDS	ENST00000539288	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
intron-3CDS	ENST00000525872	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
intron-3CDS	ENST00000538870	ENST00000300226		TCGA	LD	SARC	TCGA-3R-A8YX-01A	UVRAG	chr11	75718665	+	MS4A8	chr11	60470851	+
5CDS-5UTR	ENST00000294732	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-intron	ENST00000294732	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-intron	ENST00000294732	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-intron	ENST00000294732	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-5UTR	ENST00000367409	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-intron	ENST00000367409	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-intron	ENST00000367409	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
5CDS-intron	ENST00000367409	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
intron-5UTR	ENST00000367408	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
intron-intron	ENST00000367408	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
intron-intron	ENST00000367408	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
intron-intron	ENST00000367408	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ASPM	chr1	197115271	-	PIGC	chr1	172384514	-
intron-3CDS	ENST00000439155	ENST00000294732		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-3CDS	ENST00000439155	ENST00000367409		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-intron	ENST00000439155	ENST00000367408		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
Frame-shit	ENST00000367429	ENST00000294732		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
Frame-shit	ENST00000367429	ENST00000367409		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
5CDS-intron	ENST00000367429	ENST00000367408		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-3CDS	ENST00000496761	ENST00000294732		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-3CDS	ENST00000496761	ENST00000367409		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-intron	ENST00000496761	ENST00000367408		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-3CDS	ENST00000359637	ENST00000294732		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-3CDS	ENST00000359637	ENST00000367409		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
intron-intron	ENST00000359637	ENST00000367408		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CFH	chr1	196696070	+	ASPM	chr1	197111559	-
Frame-shit	ENST00000398073	ENST00000474855		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-5UTR	ENST00000398073	ENST00000272519		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-5UTR	ENST00000398073	ENST00000420510		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-5UTR	ENST00000398073	ENST00000404963		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-3UTR	ENST00000398073	ENST00000470417		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
Frame-shit	ENST00000548823	ENST00000474855		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-5UTR	ENST00000548823	ENST00000272519		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-5UTR	ENST00000548823	ENST00000420510		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-5UTR	ENST00000548823	ENST00000404963		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
5CDS-3UTR	ENST00000548823	ENST00000470417		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
intron-3CDS	ENST00000547701	ENST00000474855		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
intron-5UTR	ENST00000547701	ENST00000272519		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
intron-5UTR	ENST00000547701	ENST00000420510		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
intron-5UTR	ENST00000547701	ENST00000404963		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
intron-3UTR	ENST00000547701	ENST00000470417		TCGA	LD	SARC	TCGA-DX-A1KU-01A	CTDSP2	chr12	58240155	-	RALB	chr2	121036194	+
Frame-shit	ENST00000368073	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000326837	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
In-frame	ENST00000368074	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000608310	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000556710	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
intron-3CDS	ENST00000610139	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
intron-3CDS	ENST00000475733	ENST00000368170		TCGA	LD	SARC	TCGA-DX-A1KU-01A	DCAF8	chr1	160206925	-	CD1C	chr1	158260924	+
Frame-shit	ENST00000227756	ENST00000334956		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
Frame-shit	ENST00000227756	ENST00000539723		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
In-frame	ENST00000227756	ENST00000550549		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5CDS-intron	ENST00000227756	ENST00000538608		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5CDS-intron	ENST00000227756	ENST00000526746		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5UTR-3CDS	ENST00000526064	ENST00000334956		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5UTR-3CDS	ENST00000526064	ENST00000539723		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5UTR-3CDS	ENST00000526064	ENST00000550549		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5UTR-intron	ENST00000526064	ENST00000538608		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
5UTR-intron	ENST00000526064	ENST00000526746		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GALNT18	chr11	11642906	-	PARVA	chr11	12549396	+
intron-intron	ENST00000363840	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363840	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363840	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000365524	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000365524	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000365524	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000364822	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000364822	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000364822	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363859	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363859	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363859	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000385578	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000385578	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000385578	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363146	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363146	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000363146	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000364084	ENST00000369238		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000364084	ENST00000460583		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
intron-intron	ENST00000364084	ENST00000392988		TCGA	LD	SARC	TCGA-DX-A1KU-01A	GAS5	chr1	173835666	-	ACP6	chr1	147102866	-
Frame-shit	ENST00000540418	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
Frame-shit	ENST00000540418	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
Frame-shit	ENST00000540418	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
Frame-shit	ENST00000540418	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000540418	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000303145	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000303145	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000303145	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000303145	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000303145	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000411698	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000411698	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000411698	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
In-frame	ENST00000411698	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-intron	ENST00000411698	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000393543	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000393543	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000393543	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000393543	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000393543	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000430606	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000430606	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000430606	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000430606	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000430606	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000545724	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000545724	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000545724	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000545724	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000545724	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM1	chr12	68707223	-	RAP1B	chr12	69044180	+
5CDS-5UTR	ENST00000462284	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000462284	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000356290	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000356290	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000540827	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000540827	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000258149	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000258149	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000428863	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000428863	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000393412	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000393412	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000258148	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000258148	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000544561	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000544561	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000393410	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000393410	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000393413	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000393413	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000517852	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000517852	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000545204	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000545204	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000350057	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000350057	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000360430	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000360430	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000299252	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000299252	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000348801	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000348801	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000478070	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000478070	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000544125	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000544125	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A1KU-01A	MDM2	chr12	69214154	+	DDR2	chr1	162625001	+
5UTR-5UTR	ENST00000472647	ENST00000367806		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5UTR-5UTR	ENST00000472647	ENST00000367805		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5UTR-5UTR	ENST00000472647	ENST00000545005		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5UTR-5UTR	ENST00000472647	ENST00000491570		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5CDS-5UTR	ENST00000367811	ENST00000367806		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5CDS-5UTR	ENST00000367811	ENST00000367805		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5CDS-5UTR	ENST00000367811	ENST00000545005		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5CDS-5UTR	ENST00000367811	ENST00000491570		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
intron-5UTR	ENST00000469474	ENST00000367806		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
intron-5UTR	ENST00000469474	ENST00000367805		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
intron-5UTR	ENST00000469474	ENST00000545005		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
intron-5UTR	ENST00000469474	ENST00000491570		TCGA	LD	SARC	TCGA-DX-A1KU-01A	NME7	chr1	169336946	-	CCDC181	chr1	169394188	-
5CDS-intron	ENST00000334956	ENST00000380252		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-5UTR	ENST00000334956	ENST00000380259		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-intron	ENST00000334956	ENST00000336906		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-intron	ENST00000539723	ENST00000380252		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-5UTR	ENST00000539723	ENST00000380259		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-intron	ENST00000539723	ENST00000336906		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-intron	ENST00000550549	ENST00000380252		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-5UTR	ENST00000550549	ENST00000380259		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
5CDS-intron	ENST00000550549	ENST00000336906		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-intron	ENST00000538608	ENST00000380252		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-5UTR	ENST00000538608	ENST00000380259		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-intron	ENST00000538608	ENST00000336906		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-intron	ENST00000526746	ENST00000380252		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-5UTR	ENST00000526746	ENST00000380259		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-intron	ENST00000526746	ENST00000336906		TCGA	LD	SARC	TCGA-DX-A1KU-01A	PARVA	chr11	12399330	+	HBG2	chr11	5367129	-
intron-3CDS	ENST00000413953	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000413953	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000413953	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000413953	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000413953	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000347140	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000347140	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000347140	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000347140	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000347140	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000358907	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000358907	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000358907	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000358907	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000358907	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000402412	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000402412	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000402412	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-3CDS	ENST00000402412	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
5UTR-intron	ENST00000402412	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000441731	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000441731	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000441731	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000441731	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000441731	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000403821	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000403821	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000403821	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000403821	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000403821	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000546843	ENST00000250559		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000546843	ENST00000393436		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000546843	ENST00000341355		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-3CDS	ENST00000546843	ENST00000537460		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000463493		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000450214		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000543393		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000378985		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000540209		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000539091		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000542145		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000543697		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
intron-intron	ENST00000546843	ENST00000541216		TCGA	LD	SARC	TCGA-DX-A1KU-01A	R3HDM2	chr12	57824503	-	RAP1B	chr12	69044180	+
In-frame	ENST00000367723	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000367723	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000367723	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000608151	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000608151	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000608151	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000610051	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000610051	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000610051	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000263688	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000263688	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000263688	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1KU-01A	SUCO	chr1	172555088	+	GLIPR1L1	chr12	75756882	+
intron-intron	ENST00000353364	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000353364	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000280377	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000280377	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000393654	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000393654	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000550632	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000550632	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000312635	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
intron-intron	ENST00000312635	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A1KU-01A	USP15	chr12	62699839	+	TPH2	chr12	72499428	+
Frame-shit	ENST00000247843	ENST00000472647		TCGA	LD	SARC	TCGA-DX-A1KU-01A	YEATS4	chr12	69759664	+	NME7	chr1	169102055	-
Frame-shit	ENST00000247843	ENST00000367811		TCGA	LD	SARC	TCGA-DX-A1KU-01A	YEATS4	chr12	69759664	+	NME7	chr1	169102055	-
5CDS-intron	ENST00000247843	ENST00000469474		TCGA	LD	SARC	TCGA-DX-A1KU-01A	YEATS4	chr12	69759664	+	NME7	chr1	169102055	-
intron-3CDS	ENST00000548020	ENST00000472647		TCGA	LD	SARC	TCGA-DX-A1KU-01A	YEATS4	chr12	69759664	+	NME7	chr1	169102055	-
intron-3CDS	ENST00000548020	ENST00000367811		TCGA	LD	SARC	TCGA-DX-A1KU-01A	YEATS4	chr12	69759664	+	NME7	chr1	169102055	-
intron-intron	ENST00000548020	ENST00000469474		TCGA	LD	SARC	TCGA-DX-A1KU-01A	YEATS4	chr12	69759664	+	NME7	chr1	169102055	-
intron-intron	ENST00000367704	ENST00000495708		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000367704	ENST00000374710		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367704	ENST00000481272		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367704	ENST00000484973		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367704	ENST00000539376		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367704	ENST00000394926		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367704	ENST00000480279		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000367704	ENST00000374707		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367704	ENST00000374716		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000495708		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000432989	ENST00000374710		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000481272		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000484973		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000539376		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000394926		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000480279		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000432989	ENST00000374707		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000432989	ENST00000374716		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000495708		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000427304	ENST00000374710		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000481272		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000484973		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000539376		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000394926		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000480279		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000427304	ENST00000374707		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000427304	ENST00000374716		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000495708		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000367702	ENST00000374710		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000481272		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000484973		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000539376		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000394926		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000480279		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-3UTR	ENST00000367702	ENST00000374707		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
intron-intron	ENST00000367702	ENST00000374716		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000495708		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-3UTR	ENST00000367701	ENST00000374710		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000481272		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000484973		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000539376		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000394926		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000480279		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-3UTR	ENST00000367701	ENST00000374707		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
3UTR-intron	ENST00000367701	ENST00000374716		TCGA	LD	SARC	TCGA-DX-A1KU-01A	ZBTB37	chr1	173857902	+	FSD1L	chr9	108311372	+
5CDS-3UTR	ENST00000299300	ENST00000551654		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CCT2	chr12	69980598	+	OR8S1	chr12	48922286	+
5CDS-intron	ENST00000299300	ENST00000310194		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CCT2	chr12	69980598	+	OR8S1	chr12	48922286	+
5CDS-3UTR	ENST00000544368	ENST00000551654		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CCT2	chr12	69980598	+	OR8S1	chr12	48922286	+
5CDS-intron	ENST00000544368	ENST00000310194		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CCT2	chr12	69980598	+	OR8S1	chr12	48922286	+
5CDS-3UTR	ENST00000543146	ENST00000551654		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CCT2	chr12	69980598	+	OR8S1	chr12	48922286	+
5CDS-intron	ENST00000543146	ENST00000310194		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CCT2	chr12	69980598	+	OR8S1	chr12	48922286	+
5CDS-5UTR	ENST00000361654	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
5CDS-5UTR	ENST00000545889	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
5CDS-5UTR	ENST00000302528	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
5CDS-5UTR	ENST00000358808	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
5CDS-5UTR	ENST00000537178	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
5CDS-5UTR	ENST00000540338	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
intron-5UTR	ENST00000536634	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
intron-5UTR	ENST00000540539	ENST00000355329		TCGA	LD	SARC	TCGA-DX-A1KW-01A	CLIP1	chr12	122817534	-	MORN3	chr12	122107418	-
In-frame	ENST00000335154	ENST00000377560		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000335154	ENST00000430131		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000335154	ENST00000550722		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
5CDS-intron	ENST00000335154	ENST00000549141		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000550488	ENST00000377560		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000550488	ENST00000430131		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000550488	ENST00000550722		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
5CDS-intron	ENST00000550488	ENST00000549141		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000352151	ENST00000377560		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000352151	ENST00000430131		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000352151	ENST00000550722		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
5CDS-intron	ENST00000352151	ENST00000549141		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000293590	ENST00000377560		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000293590	ENST00000430131		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
In-frame	ENST00000293590	ENST00000550722		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
5CDS-intron	ENST00000293590	ENST00000549141		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
intron-3CDS	ENST00000550668	ENST00000377560		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
intron-3CDS	ENST00000550668	ENST00000430131		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
intron-3CDS	ENST00000550668	ENST00000550722		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
intron-intron	ENST00000550668	ENST00000549141		TCGA	LD	SARC	TCGA-DX-A1KW-01A	FMNL3	chr12	50100840	-	HECTD4	chr12	112721108	-
5UTR-3CDS	ENST00000377560	ENST00000266736		TCGA	LD	SARC	TCGA-DX-A1KW-01A	HECTD4	chr12	112819756	-	AMDHD1	chr12	96360126	+
5UTR-3CDS	ENST00000430131	ENST00000266736		TCGA	LD	SARC	TCGA-DX-A1KW-01A	HECTD4	chr12	112819756	-	AMDHD1	chr12	96360126	+
5UTR-3CDS	ENST00000550722	ENST00000266736		TCGA	LD	SARC	TCGA-DX-A1KW-01A	HECTD4	chr12	112819756	-	AMDHD1	chr12	96360126	+
intron-3CDS	ENST00000549141	ENST00000266736		TCGA	LD	SARC	TCGA-DX-A1KW-01A	HECTD4	chr12	112819756	-	AMDHD1	chr12	96360126	+
intron-3UTR	ENST00000450485	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000450485	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000450485	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000450485	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000450485	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
5CDS-3UTR	ENST00000333479	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
5CDS-intron	ENST00000333479	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
5CDS-intron	ENST00000333479	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
5CDS-3UTR	ENST00000333479	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
5CDS-intron	ENST00000333479	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000545065	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000545065	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000545065	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000545065	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000545065	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000537348	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000537348	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000537348	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000537348	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000537348	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000436959	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000436959	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000436959	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000436959	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000436959	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000534995	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000534995	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000534995	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3UTR	ENST00000534995	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-intron	ENST00000534995	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KNTC1	chr12	123065217	+	BTBD11	chr12	108053138	+
intron-3CDS	ENST00000229214	ENST00000261211		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
intron-3CDS	ENST00000229214	ENST00000543119		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
intron-3CDS	ENST00000229214	ENST00000542666		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
intron-intron	ENST00000229214	ENST00000553042		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
Frame-shit	ENST00000438169	ENST00000261211		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
Frame-shit	ENST00000438169	ENST00000543119		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
Frame-shit	ENST00000438169	ENST00000542666		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
5CDS-intron	ENST00000438169	ENST00000553042		TCGA	LD	SARC	TCGA-DX-A1KW-01A	KRR1	chr12	75893593	-	CDK17	chr12	96707232	-
intron-3CDS	ENST00000531326	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
intron-3CDS	ENST00000531326	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
intron-intron	ENST00000531326	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
intron-intron	ENST00000531326	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000392597	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000392597	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
5CDS-intron	ENST00000392597	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
5CDS-intron	ENST00000392597	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000351677	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000351677	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
5CDS-intron	ENST00000351677	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
5CDS-intron	ENST00000351677	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1KW-01A	PTPN11	chr12	112856928	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000372045	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
5CDS-intron	ENST00000372045	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
Frame-shit	ENST00000218054	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
5CDS-intron	ENST00000218054	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
intron-3CDS	ENST00000434224	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
intron-intron	ENST00000434224	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
In-frame	ENST00000394797	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
5CDS-intron	ENST00000394797	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
In-frame	ENST00000372042	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
5CDS-intron	ENST00000372042	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
intron-3CDS	ENST00000482160	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
intron-intron	ENST00000482160	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
In-frame	ENST00000444321	ENST00000317881		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
5CDS-intron	ENST00000444321	ENST00000460013		TCGA	LD	SARC	TCGA-DX-A1KX-01A	CHRDL1	chrX	109963063	-	SLC25A5	chrX	118602486	+
3UTR-3CDS	ENST00000536985	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
3UTR-3CDS	ENST00000536985	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
3UTR-3CDS	ENST00000536985	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
3UTR-3CDS	ENST00000536985	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379789	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379789	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379789	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379789	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000540253	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000540253	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000540253	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000540253	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000317350	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000317350	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000317350	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000317350	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379785	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379785	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379785	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379785	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379782	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379782	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379782	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379782	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000360521	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000360521	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000360521	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000360521	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379775	ENST00000374531		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379775	ENST00000448454		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379775	ENST00000483909		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
In-frame	ENST00000379775	ENST00000314527		TCGA	LD	SARC	TCGA-DX-A1KX-01A	PFKFB3	chr10	6268328	+	PALM2	chr9	112629771	+
5UTR-3CDS	ENST00000380079	ENST00000222381		TCGA	LD	SARC	TCGA-DX-A1KX-01A	STEAP4	chr7	87936107	-	PON1	chr7	94946101	-
5UTR-3CDS	ENST00000380079	ENST00000542556		TCGA	LD	SARC	TCGA-DX-A1KX-01A	STEAP4	chr7	87936107	-	PON1	chr7	94946101	-
5UTR-3CDS	ENST00000301959	ENST00000222381		TCGA	LD	SARC	TCGA-DX-A1KX-01A	STEAP4	chr7	87936107	-	PON1	chr7	94946101	-
5UTR-3CDS	ENST00000301959	ENST00000542556		TCGA	LD	SARC	TCGA-DX-A1KX-01A	STEAP4	chr7	87936107	-	PON1	chr7	94946101	-
5UTR-3CDS	ENST00000414498	ENST00000222381		TCGA	LD	SARC	TCGA-DX-A1KX-01A	STEAP4	chr7	87936107	-	PON1	chr7	94946101	-
5UTR-3CDS	ENST00000414498	ENST00000542556		TCGA	LD	SARC	TCGA-DX-A1KX-01A	STEAP4	chr7	87936107	-	PON1	chr7	94946101	-
5UTR-5UTR	ENST00000416067	ENST00000334398		TCGA	LD	SARC	TCGA-DX-A1KX-01A	TEKT4P2	chr21	9966322	-	TMLHE	chrX	154774938	-
5UTR-5UTR	ENST00000416067	ENST00000369439		TCGA	LD	SARC	TCGA-DX-A1KX-01A	TEKT4P2	chr21	9966322	-	TMLHE	chrX	154774938	-
5UTR-intron	ENST00000416067	ENST00000461075		TCGA	LD	SARC	TCGA-DX-A1KX-01A	TEKT4P2	chr21	9966322	-	TMLHE	chrX	154774938	-
Frame-shit	ENST00000526343	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000526343	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000526343	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000526343	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000282441	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000282441	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000282441	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000282441	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000537274	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000537274	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000537274	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000537274	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000345877	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000345877	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000345877	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000345877	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000531439	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000531439	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000531439	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000531439	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000524575	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
Frame-shit	ENST00000524575	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000524575	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
5CDS-intron	ENST00000524575	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
intron-3CDS	ENST00000528834	ENST00000354219		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
intron-3CDS	ENST00000528834	ENST00000256585		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
intron-intron	ENST00000528834	ENST00000530654		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
intron-intron	ENST00000528834	ENST00000369401		TCGA	LD	SARC	TCGA-DX-A1KX-01A	YAP1	chr11	101985125	+	REG4	chr1	120341225	-
intron-3CDS	ENST00000599879	ENST00000243903		TCGA	LD	SARC	TCGA-DX-A1KX-01A	ZNF98	chr19	22697166	-	ACTR5	chr20	37400202	+
intron-3CDS	ENST00000357774	ENST00000243903		TCGA	LD	SARC	TCGA-DX-A1KX-01A	ZNF98	chr19	22697166	-	ACTR5	chr20	37400202	+
intron-3CDS	ENST00000601553	ENST00000243903		TCGA	LD	SARC	TCGA-DX-A1KX-01A	ZNF98	chr19	22697166	-	ACTR5	chr20	37400202	+
Frame-shit	ENST00000292577	ENST00000598884		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ABHD17A	chr19	1879920	-	NDUFA7	chr19	8381529	-
Frame-shit	ENST00000292577	ENST00000301457		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ABHD17A	chr19	1879920	-	NDUFA7	chr19	8381529	-
Frame-shit	ENST00000250974	ENST00000598884		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ABHD17A	chr19	1879920	-	NDUFA7	chr19	8381529	-
Frame-shit	ENST00000250974	ENST00000301457		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ABHD17A	chr19	1879920	-	NDUFA7	chr19	8381529	-
In-frame	ENST00000590661	ENST00000598884		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ABHD17A	chr19	1879920	-	NDUFA7	chr19	8381529	-
In-frame	ENST00000590661	ENST00000301457		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ABHD17A	chr19	1879920	-	NDUFA7	chr19	8381529	-
In-frame	ENST00000439576	ENST00000400569		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000439576	ENST00000356443		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000439576	ENST00000261606		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
5CDS-intron	ENST00000439576	ENST00000582016		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
Frame-shit	ENST00000558207	ENST00000400569		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
Frame-shit	ENST00000558207	ENST00000356443		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
Frame-shit	ENST00000558207	ENST00000261606		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
5CDS-intron	ENST00000558207	ENST00000582016		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000559004	ENST00000400569		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000559004	ENST00000356443		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000559004	ENST00000261606		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
5CDS-intron	ENST00000559004	ENST00000582016		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000352105	ENST00000400569		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000352105	ENST00000356443		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000352105	ENST00000261606		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
5CDS-intron	ENST00000352105	ENST00000582016		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000561243	ENST00000400569		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000561243	ENST00000356443		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
In-frame	ENST00000561243	ENST00000261606		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
5CDS-intron	ENST00000561243	ENST00000582016		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ACAN	chr15	89392963	+	MYOM1	chr18	3168848	-
Frame-shit	ENST00000379226	ENST00000379303		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
Frame-shit	ENST00000379226	ENST00000336430		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
5CDS-5UTR	ENST00000379226	ENST00000379295		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
5CDS-intron	ENST00000379226	ENST00000492081		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
intron-3CDS	ENST00000476598	ENST00000379303		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
intron-3CDS	ENST00000476598	ENST00000336430		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
intron-5UTR	ENST00000476598	ENST00000379295		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
intron-intron	ENST00000476598	ENST00000492081		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
Frame-shit	ENST00000379220	ENST00000379303		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
Frame-shit	ENST00000379220	ENST00000336430		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
5CDS-5UTR	ENST00000379220	ENST00000379295		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
5CDS-intron	ENST00000379220	ENST00000492081		TCGA	LD	SARC	TCGA-DX-A1KY-01A	APOO	chrX	23925811	-	ACOT9	chrX	23754133	-
5UTR-3CDS	ENST00000395184	ENST00000273183		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
5UTR-3CDS	ENST00000395184	ENST00000457375		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
5UTR-intron	ENST00000395184	ENST00000476388		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
5UTR-3CDS	ENST00000503995	ENST00000273183		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
5UTR-3CDS	ENST00000503995	ENST00000457375		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
5UTR-intron	ENST00000503995	ENST00000476388		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
3UTR-3CDS	ENST00000506421	ENST00000273183		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
3UTR-3CDS	ENST00000506421	ENST00000457375		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
3UTR-intron	ENST00000506421	ENST00000476388		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
intron-3CDS	ENST00000395183	ENST00000273183		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
intron-3CDS	ENST00000395183	ENST00000457375		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
intron-intron	ENST00000395183	ENST00000476388		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
intron-3CDS	ENST00000264343	ENST00000273183		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
intron-3CDS	ENST00000264343	ENST00000457375		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
intron-intron	ENST00000264343	ENST00000476388		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP24	chr4	86396712	+	STAC	chr3	36570188	+
5CDS-5UTR	ENST00000379672	ENST00000316694		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000379672	ENST00000352886		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000379672	ENST00000539052		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000379672	ENST00000354098		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000340825	ENST00000316694		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000340825	ENST00000352886		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000340825	ENST00000539052		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000340825	ENST00000354098		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000262444	ENST00000316694		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000262444	ENST00000352886		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000262444	ENST00000539052		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
5CDS-5UTR	ENST00000262444	ENST00000354098		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
intron-5UTR	ENST00000578087	ENST00000316694		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
intron-5UTR	ENST00000578087	ENST00000352886		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
intron-5UTR	ENST00000578087	ENST00000539052		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
intron-5UTR	ENST00000578087	ENST00000354098		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ARHGAP44	chr17	12799828	+	SHMT1	chr17	18259314	-
In-frame	ENST00000398970	ENST00000302538		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000398970	ENST00000544583		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000398970	ENST00000572441		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-5UTR	ENST00000398970	ENST00000574437		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000398970	ENST00000291107		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000398970	ENST00000543210		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000398970	ENST00000536794		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5CDS-intron	ENST00000398970	ENST00000573895		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-3CDS	ENST00000300574	ENST00000302538		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-5UTR	ENST00000300574	ENST00000544583		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000300574	ENST00000572441		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-5UTR	ENST00000300574	ENST00000574437		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000300574	ENST00000291107		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000300574	ENST00000543210		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000300574	ENST00000536794		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000300574	ENST00000573895		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-3CDS	ENST00000574295	ENST00000302538		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-5UTR	ENST00000574295	ENST00000544583		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000574295	ENST00000572441		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-5UTR	ENST00000574295	ENST00000574437		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000574295	ENST00000291107		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000574295	ENST00000543210		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000574295	ENST00000536794		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
intron-intron	ENST00000574295	ENST00000573895		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-3CDS	ENST00000572145	ENST00000302538		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-5UTR	ENST00000572145	ENST00000544583		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-intron	ENST00000572145	ENST00000572441		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-5UTR	ENST00000572145	ENST00000574437		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-intron	ENST00000572145	ENST00000291107		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-intron	ENST00000572145	ENST00000543210		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-intron	ENST00000572145	ENST00000536794		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-intron	ENST00000572145	ENST00000573895		TCGA	LD	SARC	TCGA-DX-A1KY-01A	CRK	chr17	1340084	-	ABR	chr17	1028702	-
5UTR-5UTR	ENST00000313324	ENST00000534397		TCGA	LD	SARC	TCGA-DX-A1KY-01A	FAM220A	chr7	6388204	-	SCGB1A1	chr11	62189693	+
5UTR-5UTR	ENST00000313324	ENST00000278282		TCGA	LD	SARC	TCGA-DX-A1KY-01A	FAM220A	chr7	6388204	-	SCGB1A1	chr11	62189693	+
5UTR-5UTR	ENST00000533877	ENST00000534397		TCGA	LD	SARC	TCGA-DX-A1KY-01A	FAM220A	chr7	6388204	-	SCGB1A1	chr11	62189693	+
5UTR-5UTR	ENST00000533877	ENST00000278282		TCGA	LD	SARC	TCGA-DX-A1KY-01A	FAM220A	chr7	6388204	-	SCGB1A1	chr11	62189693	+
5CDS-5UTR	ENST00000578372	ENST00000534397		TCGA	LD	SARC	TCGA-DX-A1KY-01A	FAM220A	chr7	6388204	-	SCGB1A1	chr11	62189693	+
5CDS-5UTR	ENST00000578372	ENST00000278282		TCGA	LD	SARC	TCGA-DX-A1KY-01A	FAM220A	chr7	6388204	-	SCGB1A1	chr11	62189693	+
In-frame	ENST00000450095	ENST00000396328		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000450095	ENST00000557913		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000450095	ENST00000360509		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000450095	ENST00000559418		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
5CDS-intron	ENST00000450095	ENST00000567224		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000556278	ENST00000396328		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000556278	ENST00000557913		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000556278	ENST00000360509		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000556278	ENST00000559418		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
5CDS-intron	ENST00000556278	ENST00000567224		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000396328		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000557913		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000360509		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000378842	ENST00000559418		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
5CDS-intron	ENST00000378842	ENST00000567224		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000488412	ENST00000396328		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000488412	ENST00000557913		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000488412	ENST00000360509		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
intron-3CDS	ENST00000488412	ENST00000559418		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
intron-intron	ENST00000488412	ENST00000567224		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GALT	chr9	34648453	+	WDR72	chr15	53889471	-
In-frame	ENST00000314163	ENST00000358155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
5CDS-intron	ENST00000314163	ENST00000367733		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
5CDS-intron	ENST00000314163	ENST00000355305		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
5CDS-intron	ENST00000314163	ENST00000367731		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
5CDS-intron	ENST00000314163	ENST00000520906		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
intron-3CDS	ENST00000488603	ENST00000358155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
intron-intron	ENST00000488603	ENST00000367733		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
intron-intron	ENST00000488603	ENST00000355305		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
intron-intron	ENST00000488603	ENST00000367731		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
intron-intron	ENST00000488603	ENST00000520906		TCGA	LD	SARC	TCGA-DX-A1KY-01A	GPR89B	chr1	147400691	+	DNM3	chr1	172222713	+
intron-3CDS	ENST00000368301	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
intron-3CDS	ENST00000361308	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
In-frame	ENST00000347559	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
In-frame	ENST00000368300	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
intron-3CDS	ENST00000368299	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
In-frame	ENST00000448611	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
intron-3CDS	ENST00000368297	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
In-frame	ENST00000473598	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
intron-3CDS	ENST00000392353	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
3UTR-3CDS	ENST00000496738	ENST00000225964		TCGA	LD	SARC	TCGA-DX-A1KY-01A	LMNA	chr1	156108548	+	COL1A1	chr17	48273728	-
intron-3CDS	ENST00000464356	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
intron-intron	ENST00000464356	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-3CDS	ENST00000348159	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-intron	ENST00000348159	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-3CDS	ENST00000353795	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-intron	ENST00000353795	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-3CDS	ENST00000340875	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-intron	ENST00000340875	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-3CDS	ENST00000368240	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
5UTR-intron	ENST00000368240	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
intron-3CDS	ENST00000360595	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
intron-intron	ENST00000360595	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	MEF2D	chr1	156470278	-	SYAP1	chrX	16773068	+
intron-3CDS	ENST00000458517	ENST00000368559		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000458517	ENST00000368553		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000458517	ENST00000271854		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000362019	ENST00000368559		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000362019	ENST00000368553		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000362019	ENST00000271854		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000367737	ENST00000368559		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000367737	ENST00000368553		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000367737	ENST00000271854		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000361735	ENST00000368559		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000361735	ENST00000368553		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000361735	ENST00000271854		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000466643	ENST00000368559		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000466643	ENST00000368553		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000466643	ENST00000271854		TCGA	LD	SARC	TCGA-DX-A1KY-01A	METTL13	chr1	171783163	+	NUP210L	chr1	153984846	-
Frame-shit	ENST00000369135	ENST00000369314		TCGA	LD	SARC	TCGA-DX-A1KY-01A	OTUD7B	chr1	149931603	-	POLR3GL	chr1	145457604	+
Frame-shit	ENST00000369135	ENST00000369313		TCGA	LD	SARC	TCGA-DX-A1KY-01A	OTUD7B	chr1	149931603	-	POLR3GL	chr1	145457604	+
intron-3CDS	ENST00000479905	ENST00000369314		TCGA	LD	SARC	TCGA-DX-A1KY-01A	OTUD7B	chr1	149931603	-	POLR3GL	chr1	145457604	+
intron-3CDS	ENST00000479905	ENST00000369313		TCGA	LD	SARC	TCGA-DX-A1KY-01A	OTUD7B	chr1	149931603	-	POLR3GL	chr1	145457604	+
Frame-shit	ENST00000379162	ENST00000253039		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PDK3	chrX	24483678	+	EIF2S3	chrX	24073732	+
5CDS-intron	ENST00000379162	ENST00000460032		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PDK3	chrX	24483678	+	EIF2S3	chrX	24073732	+
Frame-shit	ENST00000441463	ENST00000253039		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PDK3	chrX	24483678	+	EIF2S3	chrX	24073732	+
5CDS-intron	ENST00000441463	ENST00000460032		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PDK3	chrX	24483678	+	EIF2S3	chrX	24073732	+
intron-3CDS	ENST00000493226	ENST00000253039		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PDK3	chrX	24483678	+	EIF2S3	chrX	24073732	+
intron-intron	ENST00000493226	ENST00000460032		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PDK3	chrX	24483678	+	EIF2S3	chrX	24073732	+
In-frame	ENST00000249636	ENST00000453228		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000354410		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000558856		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000558812		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000338042		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000557785		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000449277		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000249636	ENST00000557942		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-3CDS	ENST00000545237	ENST00000453228		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000354410		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000558856		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000558812		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000338042		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000557785		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000449277		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000545237	ENST00000557942		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-3CDS	ENST00000567417	ENST00000453228		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000354410		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000558856		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000558812		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000338042		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000557785		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000449277		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
intron-intron	ENST00000567417	ENST00000557942		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PIAS1	chr15	68346688	+	MEF2A	chr15	100211528	+
5CDS-intron	ENST00000356692	ENST00000281708		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-5UTR	ENST00000356692	ENST00000603548		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-5UTR	ENST00000356692	ENST00000604872		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000356692	ENST00000296555		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000356692	ENST00000263981		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000356692	ENST00000393956		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000356692	ENST00000603841		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000356692	ENST00000604095		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-intron	ENST00000295862	ENST00000281708		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-5UTR	ENST00000295862	ENST00000603548		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-5UTR	ENST00000295862	ENST00000604872		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-intron	ENST00000295862	ENST00000296555		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-intron	ENST00000295862	ENST00000263981		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-intron	ENST00000295862	ENST00000393956		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-intron	ENST00000295862	ENST00000603841		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5UTR-intron	ENST00000295862	ENST00000604095		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000394284	ENST00000281708		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-5UTR	ENST00000394284	ENST00000603548		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-5UTR	ENST00000394284	ENST00000604872		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000394284	ENST00000296555		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000394284	ENST00000263981		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000394284	ENST00000393956		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000394284	ENST00000603841		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000394284	ENST00000604095		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000495566	ENST00000281708		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-5UTR	ENST00000495566	ENST00000603548		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-5UTR	ENST00000495566	ENST00000604872		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000495566	ENST00000296555		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000495566	ENST00000263981		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000495566	ENST00000393956		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000495566	ENST00000603841		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
5CDS-intron	ENST00000495566	ENST00000604095		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PPP4R2	chr3	73047309	+	FBXW7	chr4	153333681	-
In-frame	ENST00000340385	ENST00000354422		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PRDX6	chr1	173446631	+	FAM78B	chr1	166040000	-
Frame-shit	ENST00000340385	ENST00000338353		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PRDX6	chr1	173446631	+	FAM78B	chr1	166040000	-
intron-3CDS	ENST00000470017	ENST00000354422		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PRDX6	chr1	173446631	+	FAM78B	chr1	166040000	-
intron-3CDS	ENST00000470017	ENST00000338353		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PRDX6	chr1	173446631	+	FAM78B	chr1	166040000	-
intron-intron	ENST00000588552	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588552	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588552	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588552	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000262963	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000262963	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000262963	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000262963	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000372412	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000372412	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000372412	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000372412	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000348075	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000348075	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000348075	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000348075	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000357368	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000357368	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000357368	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000357368	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000353284	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000353284	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000353284	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000353284	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000587303	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000587303	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000587303	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000587303	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588012	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588012	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588012	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000588012	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000592099	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000592099	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000592099	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000592099	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000590509	ENST00000494373		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000590509	ENST00000405123		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000590509	ENST00000185150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
intron-intron	ENST00000590509	ENST00000378239		TCGA	LD	SARC	TCGA-DX-A1KY-01A	PTPRS	chr19	5293152	-	ERLEC1	chr2	54028534	+
5UTR-3CDS	ENST00000358026	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000358026	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000344626	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000344626	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000429416	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000429416	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000541122	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000541122	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000589677	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000589677	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000444061	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5UTR-3CDS	ENST00000444061	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000590574	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000590574	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000413806	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000413806	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000450717	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000450717	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SMARCA4	chr19	11071850	+	CARM1	chr19	11015627	+
5CDS-5UTR	ENST00000367723	ENST00000378962		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SUCO	chr1	172526934	+	CXorf21	chrX	30594983	-
5CDS-5UTR	ENST00000608151	ENST00000378962		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SUCO	chr1	172526934	+	CXorf21	chrX	30594983	-
5CDS-5UTR	ENST00000610051	ENST00000378962		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SUCO	chr1	172526934	+	CXorf21	chrX	30594983	-
5CDS-5UTR	ENST00000263688	ENST00000378962		TCGA	LD	SARC	TCGA-DX-A1KY-01A	SUCO	chr1	172526934	+	CXorf21	chrX	30594983	-
5CDS-5UTR	ENST00000550746	ENST00000454876		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000550746	ENST00000360861		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000550746	ENST00000416216		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-intron	ENST00000550746	ENST00000484191		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000319106	ENST00000454876		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000319106	ENST00000360861		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000319106	ENST00000416216		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-intron	ENST00000319106	ENST00000484191		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000485960	ENST00000454876		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000485960	ENST00000360861		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-5UTR	ENST00000485960	ENST00000416216		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5CDS-intron	ENST00000485960	ENST00000484191		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5UTR-5UTR	ENST00000393309	ENST00000454876		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5UTR-5UTR	ENST00000393309	ENST00000360861		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5UTR-5UTR	ENST00000393309	ENST00000416216		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
5UTR-intron	ENST00000393309	ENST00000484191		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
intron-5UTR	ENST00000548679	ENST00000454876		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
intron-5UTR	ENST00000548679	ENST00000360861		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
intron-5UTR	ENST00000548679	ENST00000416216		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
intron-intron	ENST00000548679	ENST00000484191		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TBC1D15	chr12	72265948	+	SLC6A6	chr3	14485132	+
intron-3CDS	ENST00000515780	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TMEM150C	chr4	83483059	-	TYW1	chr7	66548417	+
intron-intron	ENST00000515780	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TMEM150C	chr4	83483059	-	TYW1	chr7	66548417	+
5UTR-3CDS	ENST00000449862	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TMEM150C	chr4	83483059	-	TYW1	chr7	66548417	+
5UTR-intron	ENST00000449862	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TMEM150C	chr4	83483059	-	TYW1	chr7	66548417	+
5UTR-3CDS	ENST00000508701	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TMEM150C	chr4	83483059	-	TYW1	chr7	66548417	+
5UTR-intron	ENST00000508701	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1KY-01A	TMEM150C	chr4	83483059	-	TYW1	chr7	66548417	+
3UTR-3UTR	ENST00000537031	ENST00000359156		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000537031	ENST00000541972		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000537031	ENST00000396620		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000537031	ENST00000432237		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-intron	ENST00000537031	ENST00000539632		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000310594	ENST00000359156		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000310594	ENST00000541972		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000310594	ENST00000396620		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000310594	ENST00000432237		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-intron	ENST00000310594	ENST00000539632		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000397196	ENST00000359156		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000397196	ENST00000541972		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000397196	ENST00000396620		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000397196	ENST00000432237		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-intron	ENST00000397196	ENST00000539632		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
intron-3UTR	ENST00000542408	ENST00000359156		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
intron-3UTR	ENST00000542408	ENST00000541972		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
intron-3UTR	ENST00000542408	ENST00000396620		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
intron-3UTR	ENST00000542408	ENST00000432237		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
intron-intron	ENST00000542408	ENST00000539632		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000545747	ENST00000359156		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000545747	ENST00000541972		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000545747	ENST00000396620		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-3UTR	ENST00000545747	ENST00000432237		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
3UTR-intron	ENST00000545747	ENST00000539632		TCGA	LD	SARC	TCGA-DX-A1KY-01A	WNT5B	chr12	1755463	+	CD163	chr12	7623993	-
intron-3CDS	ENST00000539115	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000539115	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-3CDS	ENST00000379188	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000379188	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-3CDS	ENST00000379177	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000379177	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-3CDS	ENST00000304543	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000304543	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-3CDS	ENST00000459724	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000459724	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-3CDS	ENST00000540034	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000540034	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-3CDS	ENST00000338565	ENST00000380155		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
intron-intron	ENST00000338565	ENST00000495743		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZFX	chrX	24167370	+	SYAP1	chrX	16775285	+
5UTR-3CDS	ENST00000601372	ENST00000558331		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3CDS	ENST00000601372	ENST00000251363		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3CDS	ENST00000601372	ENST00000559450		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-intron	ENST00000601372	ENST00000559336		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3UTR	ENST00000601372	ENST00000595722		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3CDS	ENST00000301475	ENST00000558331		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3CDS	ENST00000301475	ENST00000251363		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3CDS	ENST00000301475	ENST00000559450		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-intron	ENST00000301475	ENST00000559336		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3UTR	ENST00000301475	ENST00000595722		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3CDS	ENST00000444186	ENST00000558331		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3CDS	ENST00000444186	ENST00000251363		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3CDS	ENST00000444186	ENST00000559450		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-intron	ENST00000444186	ENST00000559336		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
intron-3UTR	ENST00000444186	ENST00000595722		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3CDS	ENST00000599938	ENST00000558331		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3CDS	ENST00000599938	ENST00000251363		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3CDS	ENST00000599938	ENST00000559450		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-intron	ENST00000599938	ENST00000559336		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-3UTR	ENST00000599938	ENST00000595722		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	CERS4	chr19	8326572	+
5UTR-5UTR	ENST00000601372	ENST00000392505		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000601372	ENST00000359685		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000601372	ENST00000357080		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000601372	ENST00000409045		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000601372	ENST00000190611		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000601372	ENST00000409631		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-intron	ENST00000601372	ENST00000315022		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-intron	ENST00000601372	ENST00000477097		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000301475	ENST00000392505		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000301475	ENST00000359685		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000301475	ENST00000357080		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000301475	ENST00000409045		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000301475	ENST00000190611		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000301475	ENST00000409631		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-intron	ENST00000301475	ENST00000315022		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-intron	ENST00000301475	ENST00000477097		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000444186	ENST00000392505		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000444186	ENST00000359685		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000444186	ENST00000357080		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000444186	ENST00000409045		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000444186	ENST00000190611		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-5UTR	ENST00000444186	ENST00000409631		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-intron	ENST00000444186	ENST00000315022		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
intron-intron	ENST00000444186	ENST00000477097		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000599938	ENST00000392505		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000599938	ENST00000359685		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000599938	ENST00000357080		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000599938	ENST00000409045		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000599938	ENST00000190611		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-5UTR	ENST00000599938	ENST00000409631		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-intron	ENST00000599938	ENST00000315022		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
5UTR-intron	ENST00000599938	ENST00000477097		TCGA	LD	SARC	TCGA-DX-A1KY-01A	ZNF558	chr19	8941994	-	OSBPL6	chr2	179149654	+
In-frame	ENST00000338316	ENST00000398805		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-intron	ENST00000338316	ENST00000398803		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-3UTR	ENST00000338316	ENST00000488101		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-3UTR	ENST00000338316	ENST00000262542		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-intron	ENST00000338316	ENST00000539114		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
In-frame	ENST00000537121	ENST00000398805		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-intron	ENST00000537121	ENST00000398803		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-3UTR	ENST00000537121	ENST00000488101		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-3UTR	ENST00000537121	ENST00000262542		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
5CDS-intron	ENST00000537121	ENST00000539114		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
intron-3CDS	ENST00000513693	ENST00000398805		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
intron-intron	ENST00000513693	ENST00000398803		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
intron-3UTR	ENST00000513693	ENST00000488101		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
intron-3UTR	ENST00000513693	ENST00000262542		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
intron-intron	ENST00000513693	ENST00000539114		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ADCY2	chr5	7773214	+	HSDL2	chr9	115179121	+
In-frame	ENST00000296657	ENST00000284268		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ANKRD33B	chr5	10564945	+	ANKH	chr5	14769300	-
5CDS-intron	ENST00000296657	ENST00000535119		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ANKRD33B	chr5	10564945	+	ANKH	chr5	14769300	-
5CDS-intron	ENST00000296657	ENST00000503939		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ANKRD33B	chr5	10564945	+	ANKH	chr5	14769300	-
Frame-shit	ENST00000280326	ENST00000401783		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000280326	ENST00000374469		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000280326	ENST00000467821		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000280326	ENST00000302728		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000280326	ENST00000374461		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000280326	ENST00000297826		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000503026	ENST00000401783		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000503026	ENST00000374469		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000503026	ENST00000467821		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000503026	ENST00000302728		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000503026	ENST00000374461		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000503026	ENST00000297826		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000515390	ENST00000401783		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000515390	ENST00000374469		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515390	ENST00000467821		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515390	ENST00000302728		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515390	ENST00000374461		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515390	ENST00000297826		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000515676	ENST00000401783		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000515676	ENST00000374469		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515676	ENST00000467821		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515676	ENST00000302728		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515676	ENST00000374461		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000515676	ENST00000297826		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000506600	ENST00000401783		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000506600	ENST00000374469		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000506600	ENST00000467821		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000506600	ENST00000302728		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000506600	ENST00000374461		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
5CDS-intron	ENST00000506600	ENST00000297826		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CCT5	chr5	10258647	+	SVEP1	chr9	113198784	-
Frame-shit	ENST00000360469	ENST00000345088		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CDH4	chr20	60448956	+	DPPA3	chr12	7867779	+
Frame-shit	ENST00000543233	ENST00000345088		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CDH4	chr20	60448956	+	DPPA3	chr12	7867779	+
intron-3CDS	ENST00000379261	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000379261	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000379261	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000379261	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000416382	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000416382	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000416382	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000416382	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
In-frame	ENST00000450189	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5CDS-intron	ENST00000450189	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5CDS-5UTR	ENST00000450189	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5CDS-intron	ENST00000450189	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
In-frame	ENST00000542579	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5CDS-intron	ENST00000542579	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5CDS-5UTR	ENST00000542579	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5CDS-intron	ENST00000542579	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-3CDS	ENST00000399850	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-intron	ENST00000399850	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-5UTR	ENST00000399850	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-intron	ENST00000399850	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-3CDS	ENST00000417956	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-intron	ENST00000417956	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-5UTR	ENST00000417956	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
5UTR-intron	ENST00000417956	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000354440	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000354440	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000354440	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000354440	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000427450	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000427450	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000427450	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000427450	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000315874	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000315874	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000315874	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000315874	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000608830	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000608830	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000608830	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000608830	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000609692	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000609692	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000609692	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000609692	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000354897	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000354897	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000354897	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000354897	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-3CDS	ENST00000537122	ENST00000454853		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000537122	ENST00000435811		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-5UTR	ENST00000537122	ENST00000369451		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
intron-intron	ENST00000537122	ENST00000481493		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CELF2	chr10	11060126	+	GABRR1	chr6	89913204	-
Frame-shit	ENST00000398073	ENST00000266674		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
5CDS-intron	ENST00000398073	ENST00000536515		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
5CDS-intron	ENST00000398073	ENST00000540815		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
Frame-shit	ENST00000548823	ENST00000266674		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
5CDS-intron	ENST00000548823	ENST00000536515		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
5CDS-intron	ENST00000548823	ENST00000540815		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
In-frame	ENST00000547701	ENST00000266674		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
5CDS-intron	ENST00000547701	ENST00000536515		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
5CDS-intron	ENST00000547701	ENST00000540815		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	LGR5	chr12	71946853	+
In-frame	ENST00000398073	ENST00000367463		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	UST	chr6	149394969	+
5CDS-3UTR	ENST00000398073	ENST00000466695		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	UST	chr6	149394969	+
In-frame	ENST00000548823	ENST00000367463		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	UST	chr6	149394969	+
5CDS-3UTR	ENST00000548823	ENST00000466695		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	UST	chr6	149394969	+
Frame-shit	ENST00000547701	ENST00000367463		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	UST	chr6	149394969	+
5CDS-3UTR	ENST00000547701	ENST00000466695		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	CTDSP2	chr12	58217687	-	UST	chr6	149394969	+
intron-3UTR	ENST00000297581	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000297581	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000297581	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000297581	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000517991	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000517991	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000517991	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000517991	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000520080	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000520080	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000520080	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000520080	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DCSTAMP	chr8	105352668	+	TSPAN31	chr12	58140372	+
3UTR-3CDS	ENST00000540275	ENST00000367328		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
3UTR-3CDS	ENST00000540275	ENST00000358517		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000452085	ENST00000367328		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000452085	ENST00000358517		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000537543	ENST00000367328		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000537543	ENST00000358517		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000331677	ENST00000367328		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000331677	ENST00000358517		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000359564	ENST00000367328		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
Frame-shit	ENST00000359564	ENST00000358517		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
intron-3CDS	ENST00000606265	ENST00000367328		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
intron-3CDS	ENST00000606265	ENST00000358517		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	DSE	chr6	116720825	+	PLEKHG1	chr6	151130241	+
5UTR-3CDS	ENST00000328090	ENST00000582888		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
5UTR-3CDS	ENST00000328090	ENST00000602676		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
5UTR-3CDS	ENST00000328090	ENST00000322297		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
5UTR-3CDS	ENST00000328090	ENST00000583542		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
5UTR-3CDS	ENST00000328090	ENST00000588673		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000463468	ENST00000582888		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000463468	ENST00000602676		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000463468	ENST00000322297		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000463468	ENST00000583542		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
intron-3CDS	ENST00000463468	ENST00000588673		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FAM208B	chr10	5727138	+	OAZ1	chr19	2271781	+
5UTR-intron	ENST00000394155	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000394155	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000394155	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000370690	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000370690	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000370690	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000535737	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000535737	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000535737	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000543669	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000543669	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000543669	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000394153	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000394153	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000394153	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000345434	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000345434	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-intron	ENST00000345434	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000539015	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000539015	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000539015	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000370683	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000370683	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000370683	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000370676	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000370676	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000370676	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000477080	ENST00000297581		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000477080	ENST00000517991		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
intron-intron	ENST00000477080	ENST00000520080		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	DCSTAMP	chr8	105352034	+
5UTR-3UTR	ENST00000394155	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000394155	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000394155	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000394155	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000370690	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000370690	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000370690	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000370690	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000535737	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000535737	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000535737	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000535737	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000543669	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000543669	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000543669	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000543669	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000394153	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000394153	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000394153	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000394153	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000345434	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-3UTR	ENST00000345434	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000345434	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5UTR-intron	ENST00000345434	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000539015	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000539015	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000539015	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000539015	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000370683	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000370683	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000370683	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000370683	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000370676	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000370676	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000370676	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000370676	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000477080	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-3UTR	ENST00000477080	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000477080	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
intron-intron	ENST00000477080	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FHL1	chrX	135252139	+	TSPAN31	chr12	58140372	+
5CDS-5UTR	ENST00000001008	ENST00000229239		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
5CDS-5UTR	ENST00000001008	ENST00000396856		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
5CDS-5UTR	ENST00000001008	ENST00000396861		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
5CDS-5UTR	ENST00000001008	ENST00000396859		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
5CDS-intron	ENST00000001008	ENST00000396858		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
intron-5UTR	ENST00000540260	ENST00000229239		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
intron-5UTR	ENST00000540260	ENST00000396856		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
intron-5UTR	ENST00000540260	ENST00000396861		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
intron-5UTR	ENST00000540260	ENST00000396859		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
intron-intron	ENST00000540260	ENST00000396858		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	FKBP4	chr12	2907037	+	GAPDH	chr12	6643976	+
5UTR-5UTR	ENST00000609686	ENST00000228644		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	GRIN2B	chr12	14132862	-	MYF5	chr12	81110819	+
5UTR-3CDS	ENST00000609686	ENST00000228641		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	GRIN2B	chr12	14132862	-	MYF6	chr12	81101634	+
Frame-shit	ENST00000376281	ENST00000487099		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376281	ENST00000373584		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376281	ENST00000416460		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376281	ENST00000344523		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
In-frame	ENST00000376263	ENST00000487099		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376263	ENST00000373584		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376263	ENST00000416460		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376263	ENST00000344523		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
Frame-shit	ENST00000376264	ENST00000487099		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376264	ENST00000373584		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376264	ENST00000416460		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000376264	ENST00000344523		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
Frame-shit	ENST00000351839	ENST00000487099		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000351839	ENST00000373584		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000351839	ENST00000416460		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000351839	ENST00000344523		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
In-frame	ENST00000360384	ENST00000487099		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000360384	ENST00000373584		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000360384	ENST00000416460		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
5CDS-intron	ENST00000360384	ENST00000344523		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	HNRNPK	chr9	86592604	-	NR6A1	chr9	127316849	-
Frame-shit	ENST00000548256	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000548256	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000548256	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000548256	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000548256	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000548256	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5UTR-3CDS	ENST00000551420	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000551420	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000551420	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000551420	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000551420	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5UTR-intron	ENST00000551420	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
Frame-shit	ENST00000300209	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000300209	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000300209	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000300209	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000300209	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000300209	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000552307	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000552307	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000552307	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000552307	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000552307	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
intron-intron	ENST00000552307	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
Frame-shit	ENST00000333012	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000333012	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000333012	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000333012	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000333012	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000333012	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	METTL21B	chr12	58166911	+	PTPRR	chr12	71158558	-
Frame-shit	ENST00000253329	ENST00000548249		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
Frame-shit	ENST00000253329	ENST00000537439		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
Frame-shit	ENST00000253329	ENST00000434715		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
Frame-shit	ENST00000253329	ENST00000543672		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
5CDS-5UTR	ENST00000253329	ENST00000551400		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000340881	ENST00000548249		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000340881	ENST00000537439		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000340881	ENST00000434715		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
intron-3CDS	ENST00000340881	ENST00000543672		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
intron-5UTR	ENST00000340881	ENST00000551400		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PPIL4	chr6	149842196	-	DCTN2	chr12	57929628	-
In-frame	ENST00000347159	ENST00000259371		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
In-frame	ENST00000347159	ENST00000408936		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
5CDS-intron	ENST00000347159	ENST00000309989		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
5CDS-intron	ENST00000347159	ENST00000487716		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
In-frame	ENST00000376588	ENST00000259371		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
In-frame	ENST00000376588	ENST00000408936		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
5CDS-intron	ENST00000376588	ENST00000309989		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
5CDS-intron	ENST00000376588	ENST00000487716		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PSAT1	chr9	80919856	+	DAB2IP	chr9	124440957	+
intron-5UTR	ENST00000412145	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PTPN3	chr9	112260499	-	SEMA5A	chr5	9437964	-
intron-5UTR	ENST00000446349	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PTPN3	chr9	112260499	-	SEMA5A	chr5	9437964	-
5UTR-5UTR	ENST00000374541	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PTPN3	chr9	112260499	-	SEMA5A	chr5	9437964	-
5UTR-5UTR	ENST00000262539	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PTPN3	chr9	112260499	-	SEMA5A	chr5	9437964	-
intron-5UTR	ENST00000394827	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PTPN3	chr9	112260499	-	SEMA5A	chr5	9437964	-
intron-5UTR	ENST00000497739	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	PTPN3	chr9	112260499	-	SEMA5A	chr5	9437964	-
Frame-shit	ENST00000550746	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
Frame-shit	ENST00000550746	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
Frame-shit	ENST00000550746	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000550746	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000319106	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000319106	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000319106	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-intron	ENST00000319106	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
Frame-shit	ENST00000485960	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
Frame-shit	ENST00000485960	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
Frame-shit	ENST00000485960	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000485960	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000393309	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000393309	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-3CDS	ENST00000393309	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
5UTR-intron	ENST00000393309	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000548679	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000548679	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000548679	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
intron-intron	ENST00000548679	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TBC1D15	chr12	72233591	+	CPM	chr12	69252851	-
Frame-shit	ENST00000543727	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000543727	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000543727	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000543727	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
Frame-shit	ENST00000550559	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000550559	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000550559	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000550559	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
Frame-shit	ENST00000548851	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000548851	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000548851	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000548851	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
Frame-shit	ENST00000454289	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000454289	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000454289	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000454289	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
intron-3CDS	ENST00000540550	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
intron-5UTR	ENST00000540550	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
intron-5UTR	ENST00000540550	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
intron-intron	ENST00000540550	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
Frame-shit	ENST00000323833	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000323833	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000323833	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000323833	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
Frame-shit	ENST00000350762	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000350762	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000350762	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000350762	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
3UTR-3CDS	ENST00000497617	ENST00000256935		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
3UTR-5UTR	ENST00000497617	ENST00000540750		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
3UTR-5UTR	ENST00000497617	ENST00000520908		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
3UTR-intron	ENST00000497617	ENST00000523351		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSFM	chr12	58186856	+	DOCK2	chr5	169174400	+
intron-3CDS	ENST00000553221	ENST00000381340		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000553221	ENST00000545902		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000553221	ENST00000242737		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-3CDS	ENST00000257910	ENST00000381340		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000257910	ENST00000545902		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000257910	ENST00000242737		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-3CDS	ENST00000547992	ENST00000381340		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000547992	ENST00000545902		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000547992	ENST00000242737		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-3CDS	ENST00000547472	ENST00000381340		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000547472	ENST00000545902		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
intron-intron	ENST00000547472	ENST00000242737		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TSPAN31	chr12	58140539	+	ITPR2	chr12	26648193	-
5CDS-intron	ENST00000448120	ENST00000359979		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000448120	ENST00000372088		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000448120	ENST00000224756		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-3UTR	ENST00000448120	ENST00000494144		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000448120	ENST00000543283		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000397132	ENST00000359979		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000397132	ENST00000372088		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000397132	ENST00000224756		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-3UTR	ENST00000397132	ENST00000494144		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
5CDS-intron	ENST00000397132	ENST00000543283		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TULP3	chr12	3043727	+	CCSER2	chr10	86177527	+
Frame-shit	ENST00000358430	ENST00000329399		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TXLNB	chr6	139609615	-	PDLIM1	chr10	96998444	-
5CDS-5UTR	ENST00000358430	ENST00000477757		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	TXLNB	chr6	139609615	-	PDLIM1	chr10	96998444	-
Frame-shit	ENST00000261167	ENST00000266674		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14953686	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000261167	ENST00000536515		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14953686	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000261167	ENST00000540815		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14953686	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000261167	ENST00000228567		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14953686	-	SYT10	chr12	33579430	-
5CDS-5UTR	ENST00000261167	ENST00000535526		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14953686	-	SYT10	chr12	33579430	-
5CDS-intron	ENST00000261167	ENST00000567656		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	WBP11	chr12	14953686	-	SYT10	chr12	33579430	-
Frame-shit	ENST00000395395	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ZNF169	chr9	97055351	+	SEMA5A	chr5	9318529	-
Frame-shit	ENST00000340911	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ZNF169	chr9	97055351	+	SEMA5A	chr5	9318529	-
Frame-shit	ENST00000481550	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ZNF169	chr9	97055351	+	SEMA5A	chr5	9318529	-
Frame-shit	ENST00000480716	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ZNF169	chr9	97055351	+	SEMA5A	chr5	9318529	-
Frame-shit	ENST00000375354	ENST00000382496		TCGA	LD	SARC	TCGA-DX-A1KZ-01A	ZNF169	chr9	97055351	+	SEMA5A	chr5	9318529	-
In-frame	ENST00000284268	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13737604	-
5CDS-intron	ENST00000284268	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13737604	-
intron-3CDS	ENST00000535119	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13737604	-
intron-intron	ENST00000535119	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13737604	-
intron-3CDS	ENST00000503939	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13737604	-
intron-intron	ENST00000503939	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	ANKH	chr5	14871461	-	DNAH5	chr5	13737604	-
Frame-shit	ENST00000546373	ENST00000280379		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000546373	ENST00000393632		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000546373	ENST00000393630		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000546373	ENST00000546600		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000546373	ENST00000552738		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000546373	ENST00000393629		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000546373	ENST00000552115		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-intron	ENST00000546373	ENST00000549378		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-intron	ENST00000546373	ENST00000551397		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000280379		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000393632		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000393630		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000546600		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000552738		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000393629		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000551568	ENST00000552115		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-intron	ENST00000551568	ENST00000549378		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-intron	ENST00000551568	ENST00000551397		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000280379		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000393632		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000393630		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000546600		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000552738		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000393629		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
Frame-shit	ENST00000338356	ENST00000552115		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-intron	ENST00000338356	ENST00000549378		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-intron	ENST00000338356	ENST00000551397		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000280379		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000393632		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000393630		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000546600		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000552738		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000393629		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-3CDS	ENST00000549691	ENST00000552115		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-intron	ENST00000549691	ENST00000549378		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
intron-intron	ENST00000549691	ENST00000551397		TCGA	LD	SARC	TCGA-DX-A1L0-01A	CPM	chr12	69326458	-	MON2	chr12	62926218	+
5CDS-5UTR	ENST00000355827	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000355827	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000355827	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000355827	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000355827	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000355827	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000355827	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000355827	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000355827	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373054	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373054	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373054	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373054	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373054	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373054	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373054	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373054	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373054	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373061	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373061	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373061	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373061	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373061	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373061	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373061	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373061	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373061	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373049	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373049	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373049	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373049	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373049	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000373049	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373049	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373049	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000373049	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000324765	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000324765	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000324765	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000324765	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000324765	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-5UTR	ENST00000324765	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000324765	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000324765	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000324765	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A1L0-01A	DIAPH2	chrX	95940189	+	RAB3IP	chr12	70149164	+
5CDS-intron	ENST00000403681	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000403681	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000403681	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000403681	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000403681	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000403681	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000403681	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000541363	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393577	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000393578	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000425208	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000536545	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000537040		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000451864		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000400992		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000368246		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000255013		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000368249		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
5CDS-intron	ENST00000354636	ENST00000494874		TCGA	LD	SARC	TCGA-DX-A1L0-01A	HMGA2	chr12	66221867	+	RHBG	chr1	156340976	+
intron-3CDS	ENST00000382303	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
intron-intron	ENST00000382303	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
3UTR-3CDS	ENST00000489369	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
3UTR-intron	ENST00000489369	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
5UTR-3CDS	ENST00000382297	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
5UTR-intron	ENST00000382297	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
intron-3CDS	ENST00000382293	ENST00000265104		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
intron-intron	ENST00000382293	ENST00000504001		TCGA	LD	SARC	TCGA-DX-A1L0-01A	KANK1	chr9	504754	+	DNAH5	chr5	13931353	-
5CDS-5UTR	ENST00000266674	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000536515	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000540815	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A1L0-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000548256	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000548256	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000548256	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5UTR-intron	ENST00000551420	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5UTR-intron	ENST00000551420	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5UTR-intron	ENST00000551420	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000300209	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000300209	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000300209	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
intron-intron	ENST00000552307	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
intron-intron	ENST00000552307	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
intron-intron	ENST00000552307	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000333012	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000333012	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000333012	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A1L0-01A	METTL21B	chr12	58166911	+	MARS	chr12	57881720	+
In-frame	ENST00000280379	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000280379	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000280379	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000280379	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000280379	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393632	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393632	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393632	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000393632	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000393632	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393630	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393630	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393630	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000393630	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000393630	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000546600	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000546600	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000546600	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000546600	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000546600	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000552738	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000552738	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000552738	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000552738	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000552738	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393629	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393629	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000393629	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000393629	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000393629	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000552115	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000552115	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000552115	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-5UTR	ENST00000552115	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-intron	ENST00000552115	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000549378	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000549378	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000549378	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-5UTR	ENST00000549378	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-intron	ENST00000549378	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000551397	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000551397	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000551397	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-5UTR	ENST00000551397	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-intron	ENST00000551397	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	MON2	chr12	62960230	+	TBC1D15	chr12	72265850	+
intron-5UTR	ENST00000427025	ENST00000563332		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000427025	ENST00000567695		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000427025	ENST00000564828		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000427025	ENST00000563507		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000427025	ENST00000562334		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-intron	ENST00000427025	ENST00000586768		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000427025	ENST00000399599		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000343505	ENST00000563332		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000343505	ENST00000567695		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000343505	ENST00000564828		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000343505	ENST00000563507		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000343505	ENST00000562334		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-intron	ENST00000343505	ENST00000586768		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000343505	ENST00000399599		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000479393	ENST00000563332		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000479393	ENST00000567695		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000479393	ENST00000564828		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000479393	ENST00000563507		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000479393	ENST00000562334		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-intron	ENST00000479393	ENST00000586768		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
intron-5UTR	ENST00000479393	ENST00000399599		TCGA	LD	SARC	TCGA-DX-A1L0-01A	NHSL1	chr6	138866760	-	CDIP1	chr16	4564665	-
Frame-shit	ENST00000306735	ENST00000081029		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RBFA	chr18	77796710	+	MRPS35	chr12	27890472	+
Frame-shit	ENST00000306735	ENST00000538315		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RBFA	chr18	77796710	+	MRPS35	chr12	27890472	+
3UTR-3CDS	ENST00000586847	ENST00000081029		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RBFA	chr18	77796710	+	MRPS35	chr12	27890472	+
3UTR-3CDS	ENST00000586847	ENST00000538315		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RBFA	chr18	77796710	+	MRPS35	chr12	27890472	+
Frame-shit	ENST00000262197	ENST00000081029		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RBFA	chr18	77796710	+	MRPS35	chr12	27890472	+
Frame-shit	ENST00000262197	ENST00000538315		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RBFA	chr18	77796710	+	MRPS35	chr12	27890472	+
In-frame	ENST00000230050	ENST00000304636		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RPS12	chr6	133137702	+	COL3A1	chr2	189859267	+
In-frame	ENST00000230050	ENST00000317840		TCGA	LD	SARC	TCGA-DX-A1L0-01A	RPS12	chr6	133137702	+	COL3A1	chr2	189859267	+
5UTR-3CDS	ENST00000299977	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000299977	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000299977	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000299977	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3UTR	ENST00000299977	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000542451	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000542451	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000542451	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000542451	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3UTR	ENST00000542451	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000592325	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000592325	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000592325	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3CDS	ENST00000592325	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
5UTR-3UTR	ENST00000592325	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A1L0-01A	SLFN5	chr17	33570162	+	TBC1D15	chr12	72307606	+
Frame-shit	ENST00000426836	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000426836	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000426836	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000426836	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
Frame-shit	ENST00000373745	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373745	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373745	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373745	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
In-frame	ENST00000373740	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373740	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373740	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373740	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
Frame-shit	ENST00000448110	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000448110	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000448110	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000448110	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5UTR-3CDS	ENST00000473615	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5UTR-intron	ENST00000473615	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5UTR-intron	ENST00000473615	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5UTR-intron	ENST00000473615	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
In-frame	ENST00000373750	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373750	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373750	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373750	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
In-frame	ENST00000373734	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373734	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373734	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
5CDS-intron	ENST00000373734	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A1L1-01A	DSN1	chr20	35383166	-	MROH8	chr20	35769717	-
In-frame	ENST00000264498	ENST00000329798		TCGA	LD	SARC	TCGA-DX-A1L1-01A	FGF2	chr4	123748507	+	FREM3	chr4	144548913	-
5CDS-intron	ENST00000264498	ENST00000508899		TCGA	LD	SARC	TCGA-DX-A1L1-01A	FGF2	chr4	123748507	+	FREM3	chr4	144548913	-
In-frame	ENST00000608478	ENST00000329798		TCGA	LD	SARC	TCGA-DX-A1L1-01A	FGF2	chr4	123748507	+	FREM3	chr4	144548913	-
5CDS-intron	ENST00000608478	ENST00000508899		TCGA	LD	SARC	TCGA-DX-A1L1-01A	FGF2	chr4	123748507	+	FREM3	chr4	144548913	-
In-frame	ENST00000418310	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
5CDS-intron	ENST00000418310	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
In-frame	ENST00000336180	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
5CDS-intron	ENST00000336180	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
In-frame	ENST00000538333	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
5CDS-intron	ENST00000538333	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
intron-3CDS	ENST00000491052	ENST00000359626		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
intron-intron	ENST00000491052	ENST00000491969		TCGA	LD	SARC	TCGA-DX-A1L1-01A	LIMK1	chr7	73526328	+	TYW1	chr7	66489887	+
In-frame	ENST00000397410	ENST00000455140		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000397410	ENST00000248070		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000397410	ENST00000535753		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000397410	ENST00000594975		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000397410	ENST00000602009		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000397410	ENST00000597937		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000595465	ENST00000455140		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000595465	ENST00000248070		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000595465	ENST00000535753		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000595465	ENST00000594975		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000595465	ENST00000602009		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000595465	ENST00000597937		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
intron-3CDS	ENST00000595879	ENST00000455140		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
intron-3CDS	ENST00000595879	ENST00000248070		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
intron-3CDS	ENST00000595879	ENST00000535753		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
intron-3CDS	ENST00000595879	ENST00000594975		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
intron-3CDS	ENST00000595879	ENST00000602009		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
intron-3CDS	ENST00000595879	ENST00000597937		TCGA	LD	SARC	TCGA-DX-A1L2-01A	AKAP8L	chr19	15529722	-	EPS15L1	chr19	16532287	-
In-frame	ENST00000449107	ENST00000589222		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000449107	ENST00000407086		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000449107	ENST00000390652		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000449107	ENST00000408905		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000449107	ENST00000588462		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000449107	ENST00000585744		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000449107	ENST00000588874		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000449107	ENST00000585812		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000589222		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000407086		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000390652		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000408905		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000588462		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000585744		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000303498	ENST00000588874		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000303498	ENST00000585812		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000589222		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000407086		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000390652		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000408905		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000588462		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000585744		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
Frame-shit	ENST00000437172	ENST00000588874		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000437172	ENST00000585812		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000589222		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000407086		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000390652		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000408905		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000588462		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000585744		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
In-frame	ENST00000383778	ENST00000588874		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
5CDS-3UTR	ENST00000383778	ENST00000585812		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000589222		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000407086		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000390652		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000408905		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000588462		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000585744		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3CDS	ENST00000482824	ENST00000588874		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-3UTR	ENST00000482824	ENST00000585812		TCGA	LD	SARC	TCGA-DX-A1L2-01A	BTD	chr3	15686438	+	BCAS3	chr17	59445688	+
intron-intron	ENST00000368630	ENST00000367929		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000368630	ENST00000359567		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000368630	ENST00000493550		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000368633	ENST00000367929		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000368633	ENST00000359567		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000368633	ENST00000493550		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000476883	ENST00000367929		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000476883	ENST00000359567		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
intron-intron	ENST00000476883	ENST00000493550		TCGA	LD	SARC	TCGA-DX-A1L2-01A	CRTC2	chr1	153925352	-	SH2D1B	chr1	162381928	-
Frame-shit	ENST00000312239	ENST00000373297		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000312239	ENST00000314607		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000312239	ENST00000482131		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
intron-3CDS	ENST00000487117	ENST00000373297		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
intron-3CDS	ENST00000487117	ENST00000314607		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
intron-intron	ENST00000487117	ENST00000482131		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000375000	ENST00000373297		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000375000	ENST00000314607		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
5CDS-intron	ENST00000375000	ENST00000482131		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
intron-3CDS	ENST00000375003	ENST00000373297		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
intron-3CDS	ENST00000375003	ENST00000314607		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
intron-intron	ENST00000375003	ENST00000482131		TCGA	LD	SARC	TCGA-DX-A1L2-01A	HP1BP3	chr1	21103090	-	ZMYM4	chr1	35824526	+
Frame-shit	ENST00000369306	ENST00000417171		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
5CDS-intron	ENST00000369306	ENST00000451928		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
5CDS-intron	ENST00000369306	ENST00000344770		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
5CDS-intron	ENST00000369306	ENST00000465595		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
intron-3CDS	ENST00000537888	ENST00000417171		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
intron-intron	ENST00000537888	ENST00000451928		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
intron-intron	ENST00000537888	ENST00000344770		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
intron-intron	ENST00000537888	ENST00000465595		TCGA	LD	SARC	TCGA-DX-A1L2-01A	PEX11B	chr1	145516456	-	PDZK1	chr1	145752428	-
Frame-shit	ENST00000367866	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
In-frame	ENST00000367866	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
5UTR-3CDS	ENST00000452019	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
5UTR-3CDS	ENST00000452019	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
Frame-shit	ENST00000429375	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
In-frame	ENST00000429375	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
3UTR-3CDS	ENST00000367865	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
3UTR-3CDS	ENST00000367865	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
5UTR-3CDS	ENST00000541643	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
5UTR-3CDS	ENST00000541643	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
5UTR-3CDS	ENST00000420254	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
5UTR-3CDS	ENST00000420254	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
intron-3CDS	ENST00000367862	ENST00000249289		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
intron-3CDS	ENST00000367862	ENST00000492758		TCGA	LD	SARC	TCGA-DX-A1L2-01A	POU2F1	chr1	167190195	+	ATP6V1F	chr7	128505431	+
In-frame	ENST00000434693	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000434693	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000396583	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000396583	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000383767	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000383767	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000445033	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000445033	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000273139	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000273139	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000383766	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000383766	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000452462	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000452462	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
In-frame	ENST00000456853	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-intron	ENST00000456853	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
intron-3CDS	ENST00000473799	ENST00000283415		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
intron-intron	ENST00000473799	ENST00000503252		TCGA	LD	SARC	TCGA-DX-A1L2-01A	RBMS3	chr3	29323247	+	LPCAT1	chr5	1501718	-
5CDS-5UTR	ENST00000353364	ENST00000300134		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000353364	ENST00000538913		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000353364	ENST00000543873		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000353364	ENST00000556155		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000353364	ENST00000537215		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000353364	ENST00000454075		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000280377	ENST00000300134		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000280377	ENST00000538913		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000280377	ENST00000543873		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000280377	ENST00000556155		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000280377	ENST00000537215		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000280377	ENST00000454075		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000393654	ENST00000300134		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000393654	ENST00000538913		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000393654	ENST00000543873		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000393654	ENST00000556155		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000393654	ENST00000537215		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000393654	ENST00000454075		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
3UTR-5UTR	ENST00000550632	ENST00000300134		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
3UTR-intron	ENST00000550632	ENST00000538913		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
3UTR-5UTR	ENST00000550632	ENST00000543873		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
3UTR-5UTR	ENST00000550632	ENST00000556155		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
3UTR-intron	ENST00000550632	ENST00000537215		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
3UTR-5UTR	ENST00000550632	ENST00000454075		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000312635	ENST00000300134		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000312635	ENST00000538913		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000312635	ENST00000543873		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000312635	ENST00000556155		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-intron	ENST00000312635	ENST00000537215		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
5CDS-5UTR	ENST00000312635	ENST00000454075		TCGA	LD	SARC	TCGA-DX-A1L2-01A	USP15	chr12	62654284	+	STAT6	chr12	57502082	-
intron-3CDS	ENST00000555220	ENST00000392452		TCGA	LD	SARC	TCGA-DX-A1L2-01A	ZBTB25	chr14	64953832	-	MB21D2	chr3	192517439	-
Frame-shit	ENST00000555424	ENST00000392452		TCGA	LD	SARC	TCGA-DX-A1L2-01A	ZBTB25	chr14	64953832	-	MB21D2	chr3	192517439	-
intron-3CDS	ENST00000608382	ENST00000392452		TCGA	LD	SARC	TCGA-DX-A1L2-01A	ZBTB25	chr14	64953832	-	MB21D2	chr3	192517439	-
intron-3CDS	ENST00000394715	ENST00000392452		TCGA	LD	SARC	TCGA-DX-A1L2-01A	ZBTB25	chr14	64953832	-	MB21D2	chr3	192517439	-
Frame-shit	ENST00000266736	ENST00000548058		TCGA	LD	SARC	TCGA-DX-A1L3-01A	AMDHD1	chr12	96350740	+	ACSS3	chr12	81568567	+
Frame-shit	ENST00000266736	ENST00000261206		TCGA	LD	SARC	TCGA-DX-A1L3-01A	AMDHD1	chr12	96350740	+	ACSS3	chr12	81568567	+
Frame-shit	ENST00000266736	ENST00000548324		TCGA	LD	SARC	TCGA-DX-A1L3-01A	AMDHD1	chr12	96350740	+	ACSS3	chr12	81568567	+
5UTR-intron	ENST00000229195	ENST00000552983		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000229195	ENST00000332896		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000229195	ENST00000552033		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000229195	ENST00000548483		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000229195	ENST00000542893		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000229195	ENST00000541813		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-3UTR	ENST00000229195	ENST00000548330		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000418359	ENST00000552983		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000418359	ENST00000332896		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000418359	ENST00000552033		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000418359	ENST00000548483		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000418359	ENST00000542893		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-intron	ENST00000418359	ENST00000541813		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
5UTR-3UTR	ENST00000418359	ENST00000548330		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000548230	ENST00000552983		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000548230	ENST00000332896		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000548230	ENST00000552033		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000548230	ENST00000548483		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000548230	ENST00000542893		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000548230	ENST00000541813		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-3UTR	ENST00000548230	ENST00000548330		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551483	ENST00000552983		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551483	ENST00000332896		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551483	ENST00000552033		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551483	ENST00000548483		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551483	ENST00000542893		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-intron	ENST00000551483	ENST00000541813		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
intron-3UTR	ENST00000551483	ENST00000548330		TCGA	LD	SARC	TCGA-DX-A1L3-01A	CNOT2	chr12	70637260	+	CRADD	chr12	94243746	+
In-frame	ENST00000178640	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
In-frame	ENST00000178640	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000178640	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000178640	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
3UTR-3CDS	ENST00000560591	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
3UTR-3CDS	ENST00000560591	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
3UTR-intron	ENST00000560591	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
3UTR-intron	ENST00000560591	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
In-frame	ENST00000395476	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
In-frame	ENST00000395476	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000395476	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000395476	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
In-frame	ENST00000354498	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
In-frame	ENST00000354498	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000354498	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
5CDS-intron	ENST00000354498	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
intron-3CDS	ENST00000340972	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
intron-3CDS	ENST00000340972	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
intron-intron	ENST00000340972	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
intron-intron	ENST00000340972	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MAP2K5	chr15	67893087	+	MYRFL	chr12	70272808	+
In-frame	ENST00000462284	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000356290	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000540827	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000258149	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000428863	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000393412	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000258148	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000544561	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000393410	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000393413	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000517852	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000545204	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000350057	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000360430	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000299252	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
In-frame	ENST00000348801	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000478070	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
intron-3CDS	ENST00000544125	ENST00000236166		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MDM2	chr12	69229764	+	FMO6P	chr1	171112320	+
Frame-shit	ENST00000359523	ENST00000263686		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000367792		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000367793		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000367791		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000367794		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000367786		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000458599		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000359523	ENST00000367788		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000263686		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000367792		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000367793		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000367791		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000367794		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000367786		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000458599		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000392121	ENST00000367788		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000263686		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000367792		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000367793		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000367791		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000367794		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000367786		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000458599		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
Frame-shit	ENST00000474859	ENST00000367788		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000263686		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000367792		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000367793		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000367791		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000367794		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000367786		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000458599		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
intron-3CDS	ENST00000403379	ENST00000367788		TCGA	LD	SARC	TCGA-DX-A1L3-01A	MPZL1	chr1	167734986	+	SELP	chr1	169586652	-
5CDS-5UTR	ENST00000420696	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000420696	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-intron	ENST00000420696	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-5UTR	ENST00000401534	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-5UTR	ENST00000401534	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-intron	ENST00000401534	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000559240	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000559240	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-intron	ENST00000559240	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
3UTR-5UTR	ENST00000367897	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
3UTR-5UTR	ENST00000367897	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
3UTR-intron	ENST00000367897	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000540236	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000540236	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-intron	ENST00000540236	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000560641	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000560641	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-intron	ENST00000560641	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-5UTR	ENST00000474046	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-5UTR	ENST00000474046	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-intron	ENST00000474046	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-5UTR	ENST00000485769	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-5UTR	ENST00000485769	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-intron	ENST00000485769	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000540246	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-5UTR	ENST00000540246	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
5CDS-intron	ENST00000540246	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PBX1	chr1	164790863	+	ELK3	chr12	96617343	+
intron-3CDS	ENST00000438447	ENST00000367765		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000438447	ENST00000367767		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000438447	ENST00000361580		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000438447	ENST00000538366		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000438447	ENST00000540905		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-intron	ENST00000438447	ENST00000490550		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000282493	ENST00000367765		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000282493	ENST00000367767		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000282493	ENST00000361580		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000282493	ENST00000538366		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000282493	ENST00000540905		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-intron	ENST00000282493	ENST00000490550		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000513490	ENST00000367765		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000513490	ENST00000367767		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000513490	ENST00000361580		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000513490	ENST00000538366		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-3CDS	ENST00000513490	ENST00000540905		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-intron	ENST00000513490	ENST00000490550		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PDZD2	chr5	31855274	+	KIFAP3	chr1	169930376	-
intron-intron	ENST00000309364	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000309364	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000309364	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-5UTR	ENST00000309364	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000359180	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000359180	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000359180	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000359180	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000317589	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000317589	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000317589	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000317589	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000355397	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000355397	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000355397	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000355397	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000429027	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000429027	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000429027	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000429027	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000539256	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000539256	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000539256	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000539256	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000299275	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000299275	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000299275	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000299275	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000538714	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000538714	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000538714	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000538714	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000543806	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000543806	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000543806	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000543806	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000424268	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000424268	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000424268	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000424268	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000540972	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000540972	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000540972	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-5UTR	ENST00000540972	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000510738	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000510738	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-intron	ENST00000510738	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
intron-5UTR	ENST00000510738	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L3-01A	PLEKHA5	chr12	19475601	+	CPM	chr12	69351458	-
Frame-shit	ENST00000398004	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000398004	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000398004	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000398004	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
3UTR-3CDS	ENST00000538043	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
3UTR-3CDS	ENST00000538043	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
3UTR-3CDS	ENST00000538043	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
3UTR-3CDS	ENST00000538043	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SLC35E3	chr12	69145970	+	MYRFL	chr12	70345893	+
5CDS-5UTR	ENST00000367723	ENST00000382275		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000367723	ENST00000507958		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000367723	ENST00000502796		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000367723	ENST00000511273		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000367723	ENST00000274170		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000367723	ENST00000506372		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000367723	ENST00000510297		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000608151	ENST00000382275		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000608151	ENST00000507958		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000608151	ENST00000502796		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000608151	ENST00000511273		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000608151	ENST00000274170		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000608151	ENST00000506372		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000608151	ENST00000510297		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000610051	ENST00000382275		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000610051	ENST00000507958		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000610051	ENST00000502796		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000610051	ENST00000511273		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000610051	ENST00000274170		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000610051	ENST00000506372		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000610051	ENST00000510297		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000263688	ENST00000382275		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000263688	ENST00000507958		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000263688	ENST00000502796		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000263688	ENST00000511273		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000263688	ENST00000274170		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000263688	ENST00000506372		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000263688	ENST00000510297		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	CDH18	chr5	19981287	-
Frame-shit	ENST00000367723	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000367723	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000367723	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000367723	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000608151	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000608151	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000608151	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000608151	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000610051	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000610051	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000610051	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000610051	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000263688	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000263688	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000263688	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000263688	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A1L3-01A	SUCO	chr1	172502637	+	MYRFL	chr12	70249060	+
5UTR-5UTR	ENST00000542120	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000542120	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5UTR-5UTR	ENST00000542120	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5UTR-intron	ENST00000542120	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5UTR-3UTR	ENST00000542120	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000229088	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000229088	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5CDS-5UTR	ENST00000229088	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5CDS-intron	ENST00000229088	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
5CDS-3UTR	ENST00000229088	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
3UTR-5UTR	ENST00000456757	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
3UTR-5UTR	ENST00000456757	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
3UTR-5UTR	ENST00000456757	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
3UTR-intron	ENST00000456757	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
3UTR-3UTR	ENST00000456757	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
intron-5UTR	ENST00000539867	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
intron-5UTR	ENST00000539867	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
intron-5UTR	ENST00000539867	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
intron-intron	ENST00000539867	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
intron-3UTR	ENST00000539867	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A1L3-01A	TBC1D30	chr12	65179825	+	SYT1	chr12	79371579	+
3UTR-3CDS	ENST00000592666	ENST00000221480		TCGA	LD	SARC	TCGA-DX-A1L3-01A	UHRF1	chr19	4947223	+	PEX11G	chr19	7543262	-
3UTR-3CDS	ENST00000592666	ENST00000593942		TCGA	LD	SARC	TCGA-DX-A1L3-01A	UHRF1	chr19	4947223	+	PEX11G	chr19	7543262	-
3UTR-5UTR	ENST00000592666	ENST00000599519		TCGA	LD	SARC	TCGA-DX-A1L3-01A	UHRF1	chr19	4947223	+	PEX11G	chr19	7543262	-
In-frame	ENST00000368911	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
In-frame	ENST00000368911	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
In-frame	ENST00000368911	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000368911	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
Frame-shit	ENST00000323817	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
Frame-shit	ENST00000323817	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
Frame-shit	ENST00000323817	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000323817	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000413605	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000413605	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000413605	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-intron	ENST00000413605	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000497709	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000497709	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-3CDS	ENST00000497709	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
intron-intron	ENST00000497709	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A1L4-01A	CDK19	chr6	111067329	-	CPM	chr12	69265736	-
5CDS-intron	ENST00000543096	ENST00000440781		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543096	ENST00000431837		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543096	ENST00000448290		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543096	ENST00000551736		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543111	ENST00000440781		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543111	ENST00000431837		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543111	ENST00000448290		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000543111	ENST00000551736		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000327337	ENST00000440781		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000327337	ENST00000431837		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000327337	ENST00000448290		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000327337	ENST00000551736		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FAM186A	chr12	50724356	-	IRAK4	chr12	44165023	+
5CDS-intron	ENST00000348697	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000348697	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000348697	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000348697	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000402984	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000402984	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000402984	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000402984	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000262722	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000262722	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000262722	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000262722	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000327858	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000327858	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000327858	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000327858	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000442170	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000442170	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000442170	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000442170	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000340923	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-5UTR	ENST00000340923	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000340923	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5CDS-intron	ENST00000340923	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
intron-intron	ENST00000476366	ENST00000368911		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
intron-5UTR	ENST00000476366	ENST00000323817		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
intron-intron	ENST00000476366	ENST00000413605		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
intron-intron	ENST00000476366	ENST00000497709		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FBLN1	chr22	45914667	+	CDK19	chr6	111095140	-
5UTR-3CDS	ENST00000299293	ENST00000388887		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	STAB2	chr12	104044274	+
5UTR-3CDS	ENST00000549921	ENST00000388887		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	STAB2	chr12	104044274	+
5UTR-3CDS	ENST00000550389	ENST00000388887		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	STAB2	chr12	104044274	+
intron-3CDS	ENST00000397997	ENST00000388887		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FRS2	chr12	69864310	+	STAB2	chr12	104044274	+
5UTR-intron	ENST00000368682	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368682	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368682	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-5UTR	ENST00000368682	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-3UTR	ENST00000368682	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368682	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000354650	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000354650	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000354650	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-5UTR	ENST00000354650	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-3UTR	ENST00000354650	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000354650	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000229471	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000229471	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000229471	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-5UTR	ENST00000229471	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-3UTR	ENST00000229471	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000229471	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368667	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368667	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368667	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-5UTR	ENST00000368667	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-3UTR	ENST00000368667	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368667	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000368678	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000368678	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000368678	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-5UTR	ENST00000368678	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-3UTR	ENST00000368678	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000368678	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000229470	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000229470	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000229470	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-5UTR	ENST00000229470	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-3UTR	ENST00000229470	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000229470	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000356013	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000356013	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000356013	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-5UTR	ENST00000356013	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-3UTR	ENST00000356013	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000356013	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000538466	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000538466	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000538466	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-5UTR	ENST00000538466	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-3UTR	ENST00000538466	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000538466	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000476769	ENST00000555159		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000476769	ENST00000555805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000476769	ENST00000554643		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-5UTR	ENST00000476769	ENST00000554150		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-3UTR	ENST00000476769	ENST00000556481		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
intron-intron	ENST00000476769	ENST00000322165		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	HSD17B6	chr12	57156982	+
5UTR-intron	ENST00000368682	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368682	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368682	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368682	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000354650	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000354650	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000354650	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000354650	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000229471	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000229471	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000229471	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000229471	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368667	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368667	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368667	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000368667	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000368678	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000368678	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000368678	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000368678	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000229470	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000229470	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000229470	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000229470	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000356013	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000356013	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000356013	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
5UTR-intron	ENST00000356013	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000538466	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000538466	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000538466	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000538466	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000476769	ENST00000550574		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000476769	ENST00000541364		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000476769	ENST00000301072		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000476769	ENST00000549183		TCGA	LD	SARC	TCGA-DX-A1L4-01A	FYN	chr6	112101769	-	TUBA1C	chr12	49666036	+
intron-intron	ENST00000398016	ENST00000368802		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000398016	ENST00000368805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000398016	ENST00000435970		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000398016	ENST00000358835		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000398016	ENST00000462119		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000359742	ENST00000368802		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000359742	ENST00000368805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000359742	ENST00000435970		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000359742	ENST00000358835		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000359742	ENST00000462119		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000286445	ENST00000368802		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000286445	ENST00000368805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000286445	ENST00000435970		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000286445	ENST00000358835		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000286445	ENST00000462119		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000542021	ENST00000368802		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000542021	ENST00000368805		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000542021	ENST00000435970		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-5UTR	ENST00000542021	ENST00000358835		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
intron-intron	ENST00000542021	ENST00000462119		TCGA	LD	SARC	TCGA-DX-A1L4-01A	GRIP1	chr12	66747319	-	REV3L	chr6	111804868	-
5CDS-intron	ENST00000536525	ENST00000538618		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000536525	ENST00000392979		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000536525	ENST00000299222		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000536525	ENST00000392977		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000536525	ENST00000550015		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-3UTR	ENST00000536525	ENST00000551148		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000397909	ENST00000538618		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000397909	ENST00000392979		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000397909	ENST00000299222		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000397909	ENST00000392977		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000397909	ENST00000550015		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-3UTR	ENST00000397909	ENST00000551148		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000228327	ENST00000538618		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000228327	ENST00000392979		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000228327	ENST00000299222		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000228327	ENST00000392977		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000228327	ENST00000550015		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-3UTR	ENST00000228327	ENST00000551148		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000266692	ENST00000538618		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000266692	ENST00000392979		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000266692	ENST00000299222		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000266692	ENST00000392977		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-intron	ENST00000266692	ENST00000550015		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
5CDS-3UTR	ENST00000266692	ENST00000551148		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000552300	ENST00000538618		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000552300	ENST00000392979		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000552300	ENST00000299222		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000552300	ENST00000392977		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000552300	ENST00000550015		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-3UTR	ENST00000552300	ENST00000551148		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000541270	ENST00000538618		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000541270	ENST00000392979		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000541270	ENST00000299222		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000541270	ENST00000392977		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000541270	ENST00000550015		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-3UTR	ENST00000541270	ENST00000551148		TCGA	LD	SARC	TCGA-DX-A1L4-01A	NAV3	chr12	78362482	+	ANO4	chr12	101246146	+
intron-intron	ENST00000413953	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000413953	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000413953	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
5UTR-intron	ENST00000347140	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
5UTR-intron	ENST00000347140	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
5UTR-intron	ENST00000347140	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000358907	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000358907	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000358907	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
5UTR-intron	ENST00000402412	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
5UTR-intron	ENST00000402412	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
5UTR-intron	ENST00000402412	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000441731	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000441731	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000441731	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000403821	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000403821	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000403821	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000546843	ENST00000367469		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000546843	ENST00000367467		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
intron-intron	ENST00000546843	ENST00000470750		TCGA	LD	SARC	TCGA-DX-A1L4-01A	R3HDM2	chr12	57789532	-	SASH1	chr6	148867151	+
In-frame	ENST00000441448	ENST00000540797		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
In-frame	ENST00000441448	ENST00000380324		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
In-frame	ENST00000441448	ENST00000268049		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
In-frame	ENST00000441448	ENST00000536001		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
5CDS-intron	ENST00000441448	ENST00000539772		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
5CDS-intron	ENST00000441448	ENST00000558285		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
5CDS-intron	ENST00000441448	ENST00000559711		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
5CDS-intron	ENST00000441448	ENST00000558218		TCGA	LD	SARC	TCGA-DX-A1L4-01A	RPF2	chr6	111318467	+	USP3	chr15	63824846	+
Frame-shit	ENST00000447411	ENST00000543727		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000447411	ENST00000550559		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000447411	ENST00000548851		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000447411	ENST00000454289		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000447411	ENST00000540550		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000447411	ENST00000323833		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000447411	ENST00000350762		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
5CDS-3UTR	ENST00000447411	ENST00000497617		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000543727		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000550559		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000548851		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000454289		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000540550		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000323833		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000266579	ENST00000350762		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
5CDS-3UTR	ENST00000266579	ENST00000497617		TCGA	LD	SARC	TCGA-DX-A1L4-01A	SLC38A4	chr12	47173394	-	TSFM	chr12	58179946	+
Frame-shit	ENST00000405876	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
5CDS-intron	ENST00000405876	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
5CDS-intron	ENST00000405876	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
Frame-shit	ENST00000312777	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
5CDS-intron	ENST00000312777	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
5CDS-intron	ENST00000312777	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
intron-3CDS	ENST00000550780	ENST00000378695		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
intron-intron	ENST00000550780	ENST00000312442		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
intron-intron	ENST00000550780	ENST00000548623		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TCHP	chr12	110342598	+	GLIPR1L1	chr12	75763740	+
intron-intron	ENST00000550574	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000550574	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000541364	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000541364	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
5CDS-intron	ENST00000301072	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
5CDS-intron	ENST00000301072	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
5CDS-intron	ENST00000549183	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
5CDS-intron	ENST00000549183	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A1L4-01A	TUBA1C	chr12	49658967	+	NT5DC3	chr12	104165107	-
intron-3CDS	ENST00000359019	ENST00000248306		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
intron-intron	ENST00000359019	ENST00000547357		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
In-frame	ENST00000334822	ENST00000248306		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
5CDS-intron	ENST00000334822	ENST00000547357		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
In-frame	ENST00000426126	ENST00000248306		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
5CDS-intron	ENST00000426126	ENST00000547357		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
intron-3CDS	ENST00000550789	ENST00000248306		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
intron-intron	ENST00000550789	ENST00000547357		TCGA	LD	SARC	TCGA-DX-A1L4-01A	ZDHHC17	chr12	77216311	+	METTL25	chr12	82870423	+
In-frame	ENST00000388820	ENST00000560626		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000388820	ENST00000558305		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000388820	ENST00000567337		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5CDS-intron	ENST00000388820	ENST00000312493		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5UTR-3CDS	ENST00000566303	ENST00000560626		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5UTR-intron	ENST00000566303	ENST00000558305		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5UTR-intron	ENST00000566303	ENST00000567337		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
5UTR-intron	ENST00000566303	ENST00000312493		TCGA	LD	SARC	TCGA-DX-A23R-01A	ADAMTS7	chr15	79080573	-	PEAK1	chr15	77407661	-
Frame-shit	ENST00000261721	ENST00000407106		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
Frame-shit	ENST00000261721	ENST00000261755		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
Frame-shit	ENST00000261721	ENST00000561421		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5CDS-5UTR	ENST00000261721	ENST00000539156		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5CDS-intron	ENST00000261721	ENST00000558627		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
Frame-shit	ENST00000379403	ENST00000407106		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
Frame-shit	ENST00000379403	ENST00000261755		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
Frame-shit	ENST00000379403	ENST00000561421		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5CDS-5UTR	ENST00000379403	ENST00000539156		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5CDS-intron	ENST00000379403	ENST00000558627		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5UTR-3CDS	ENST00000560015	ENST00000407106		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5UTR-3CDS	ENST00000560015	ENST00000261755		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5UTR-3CDS	ENST00000560015	ENST00000561421		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5UTR-5UTR	ENST00000560015	ENST00000539156		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
5UTR-intron	ENST00000560015	ENST00000558627		TCGA	LD	SARC	TCGA-DX-A23R-01A	BTBD1	chr15	83698888	-	FAH	chr15	80450402	+
In-frame	ENST00000367435	ENST00000367501		TCGA	LD	SARC	TCGA-DX-A23R-01A	CDC73	chr1	193205486	+	SWT1	chr1	185153375	+
In-frame	ENST00000367435	ENST00000367500		TCGA	LD	SARC	TCGA-DX-A23R-01A	CDC73	chr1	193205486	+	SWT1	chr1	185153375	+
intron-3CDS	ENST00000477868	ENST00000367501		TCGA	LD	SARC	TCGA-DX-A23R-01A	CDC73	chr1	193205486	+	SWT1	chr1	185153375	+
intron-3CDS	ENST00000477868	ENST00000367500		TCGA	LD	SARC	TCGA-DX-A23R-01A	CDC73	chr1	193205486	+	SWT1	chr1	185153375	+
Frame-shit	ENST00000398073	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
Frame-shit	ENST00000398073	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
Frame-shit	ENST00000398073	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
5CDS-intron	ENST00000398073	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
Frame-shit	ENST00000548823	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
Frame-shit	ENST00000548823	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
Frame-shit	ENST00000548823	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
5CDS-intron	ENST00000548823	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000547701	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000547701	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
intron-3CDS	ENST00000547701	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
intron-intron	ENST00000547701	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	CPM	chr12	69252851	-
5CDS-intron	ENST00000398073	ENST00000553277		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000398073	ENST00000243077		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000398073	ENST00000338962		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000398073	ENST00000554174		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000398073	ENST00000553446		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000548823	ENST00000553277		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000548823	ENST00000243077		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000548823	ENST00000338962		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000548823	ENST00000554174		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-intron	ENST00000548823	ENST00000553446		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
intron-intron	ENST00000547701	ENST00000553277		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
intron-intron	ENST00000547701	ENST00000243077		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
intron-intron	ENST00000547701	ENST00000338962		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
intron-intron	ENST00000547701	ENST00000554174		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
intron-intron	ENST00000547701	ENST00000553446		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	LRP1	chr12	57559588	+
5CDS-5UTR	ENST00000398073	ENST00000312156		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000398073	ENST00000435572		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000398073	ENST00000540264		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000398073	ENST00000553070		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000548823	ENST00000312156		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000548823	ENST00000435572		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000548823	ENST00000540264		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000548823	ENST00000553070		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
intron-5UTR	ENST00000547701	ENST00000312156		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
intron-5UTR	ENST00000547701	ENST00000435572		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
intron-5UTR	ENST00000547701	ENST00000540264		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
intron-5UTR	ENST00000547701	ENST00000553070		TCGA	LD	SARC	TCGA-DX-A23R-01A	CTDSP2	chr12	58240155	-	NFE2	chr12	54689088	-
In-frame	ENST00000356079	ENST00000295851		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000356079	ENST00000261017		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000356079	ENST00000430418		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000356079	ENST00000424558		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000356079	ENST00000261016		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000356079	ENST00000422511		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
5CDS-3UTR	ENST00000356079	ENST00000430574		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
5CDS-3UTR	ENST00000356079	ENST00000261018		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3CDS	ENST00000461371	ENST00000295851		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3CDS	ENST00000461371	ENST00000261017		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3CDS	ENST00000461371	ENST00000430418		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3CDS	ENST00000461371	ENST00000424558		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3CDS	ENST00000461371	ENST00000261016		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3CDS	ENST00000461371	ENST00000422511		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3UTR	ENST00000461371	ENST00000430574		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
3UTR-3UTR	ENST00000461371	ENST00000261018		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000429815	ENST00000295851		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000429815	ENST00000261017		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000429815	ENST00000430418		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000429815	ENST00000424558		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000429815	ENST00000261016		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
In-frame	ENST00000429815	ENST00000422511		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
5CDS-3UTR	ENST00000429815	ENST00000430574		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
5CDS-3UTR	ENST00000429815	ENST00000261018		TCGA	LD	SARC	TCGA-DX-A23R-01A	CYP20A1	chr2	204144836	+	ABI2	chr2	204267299	+
Frame-shit	ENST00000548249	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000548249	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000548249	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000548249	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
5CDS-intron	ENST00000548249	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
5CDS-intron	ENST00000548249	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000537439	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000537439	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000537439	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000537439	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-intron	ENST00000537439	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-intron	ENST00000537439	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000434715	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000434715	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000434715	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000434715	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
5CDS-intron	ENST00000434715	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
5CDS-intron	ENST00000434715	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000543672	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000543672	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000543672	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
Frame-shit	ENST00000543672	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
5CDS-intron	ENST00000543672	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
5CDS-intron	ENST00000543672	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000551400	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000551400	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000551400	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3CDS	ENST00000551400	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-intron	ENST00000551400	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-intron	ENST00000551400	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A23R-01A	DCTN2	chr12	57939811	-	NAV3	chr12	78522486	+
intron-3UTR	ENST00000340748	ENST00000381395		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000340748	ENST00000381406		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000340748	ENST00000416167		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000340748	ENST00000300632		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000340748	ENST00000434045		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000340748	ENST00000381392		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000340748	ENST00000381389		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000340748	ENST00000418738		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000540357	ENST00000381395		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000540357	ENST00000381406		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000540357	ENST00000416167		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000540357	ENST00000300632		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000540357	ENST00000434045		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000540357	ENST00000381392		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000540357	ENST00000381389		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000540357	ENST00000418738		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000359526	ENST00000381395		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000359526	ENST00000381406		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000359526	ENST00000416167		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000359526	ENST00000300632		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000359526	ENST00000434045		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000359526	ENST00000381392		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000359526	ENST00000381389		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000359526	ENST00000418738		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000589538	ENST00000381395		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000589538	ENST00000381406		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000589538	ENST00000416167		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3UTR	ENST00000589538	ENST00000300632		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000589538	ENST00000434045		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000589538	ENST00000381392		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000589538	ENST00000381389		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-intron	ENST00000589538	ENST00000418738		TCGA	LD	SARC	TCGA-DX-A23R-01A	DNMT1	chr19	10262085	-	IGF2	chr11	2151894	-
intron-3CDS	ENST00000553277	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000553277	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-intron	ENST00000553277	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
Frame-shit	ENST00000243077	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
Frame-shit	ENST00000243077	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
5CDS-intron	ENST00000243077	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000338962	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000338962	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-intron	ENST00000338962	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000554174	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000554174	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-intron	ENST00000554174	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000553446	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-3CDS	ENST00000553446	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
intron-intron	ENST00000553446	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A23R-01A	LRP1	chr12	57567763	+	MARS	chr12	57908503	+
5CDS-5UTR	ENST00000425019	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000425019	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000425019	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000425019	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000324219	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000324219	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000324219	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000324219	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000350198	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000350198	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000350198	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000350198	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000302217	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000302217	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000302217	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000302217	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000413150	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000413150	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000413150	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000413150	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000347699	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000347699	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000347699	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000347699	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000456652	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000456652	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-5UTR	ENST00000456652	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000456652	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-5UTR	ENST00000350878	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-5UTR	ENST00000350878	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-5UTR	ENST00000350878	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-intron	ENST00000350878	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-5UTR	ENST00000498066	ENST00000332549		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-5UTR	ENST00000498066	ENST00000393414		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-5UTR	ENST00000498066	ENST00000441002		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
intron-intron	ENST00000498066	ENST00000485335		TCGA	LD	SARC	TCGA-DX-A23R-01A	MAP4K4	chr2	102315000	+	IL1R2	chr2	102624977	+
5CDS-intron	ENST00000536525	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000536525	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000536525	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000536525	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000536525	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000397909	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000397909	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000397909	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000397909	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000397909	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000228327	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000228327	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000228327	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000228327	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000228327	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000266692	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000266692	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000266692	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000266692	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-intron	ENST00000266692	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
3UTR-intron	ENST00000552300	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
3UTR-intron	ENST00000552300	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
3UTR-intron	ENST00000552300	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
3UTR-intron	ENST00000552300	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
3UTR-intron	ENST00000552300	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
intron-intron	ENST00000541270	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
intron-intron	ENST00000541270	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
intron-intron	ENST00000541270	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
intron-intron	ENST00000541270	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
intron-intron	ENST00000541270	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	NAV3	chr12	78574825	+	SLC6A15	chr12	85279340	-
5CDS-5UTR	ENST00000328827	ENST00000052754		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-intron	ENST00000328827	ENST00000425043		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000393155		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000228329		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000303320		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000552962		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-intron	ENST00000328827	ENST00000441303		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-intron	ENST00000328827	ENST00000420120		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000547568		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-intron	ENST00000328827	ENST00000456569		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000546370		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000546745		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000550099		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-5UTR	ENST00000328827	ENST00000551354		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5CDS-intron	ENST00000328827	ENST00000548768		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000052754		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-intron	ENST00000547571	ENST00000425043		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000393155		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000228329		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000303320		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000552962		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-intron	ENST00000547571	ENST00000441303		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-intron	ENST00000547571	ENST00000420120		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000547568		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-intron	ENST00000547571	ENST00000456569		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000546370		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000546745		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000550099		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-5UTR	ENST00000547571	ENST00000551354		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
5UTR-intron	ENST00000547571	ENST00000548768		TCGA	LD	SARC	TCGA-DX-A23R-01A	PAWR	chr12	80083509	-	DCN	chr12	91572362	-
Frame-shit	ENST00000359282	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000359282	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000359282	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000603815	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000603815	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000603815	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000437231	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000437231	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000437231	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000447282	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000447282	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000447282	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000549863	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000549863	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000549863	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000359462	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000359462	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000359462	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000546463	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000546463	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000546463	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000552296	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000552296	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000552296	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000552819	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000552819	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000552819	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000455667	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000455667	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000455667	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000439930	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000439930	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000439930	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000548933	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000548933	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
Frame-shit	ENST00000548933	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000541275	ENST00000394885		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000541275	ENST00000320963		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000541275	ENST00000394883		TCGA	LD	SARC	TCGA-DX-A23R-01A	PCBP2	chr12	53865591	+	RCN2	chr15	77236099	+
In-frame	ENST00000373542	ENST00000376113		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000346226		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000352848		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000393041		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000348750		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000357970		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000259238		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000393040		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000351659		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000316724		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373542	ENST00000409400		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
5CDS-5UTR	ENST00000373542	ENST00000466111		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000376113		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000346226		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000352848		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000393041		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000348750		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000357970		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000259238		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000393040		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000351659		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000316724		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373545	ENST00000409400		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
5CDS-5UTR	ENST00000373545	ENST00000466111		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000376113		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000346226		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000352848		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000393041		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000348750		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000357970		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000259238		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000393040		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000351659		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000316724		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000541944	ENST00000409400		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
5CDS-5UTR	ENST00000541944	ENST00000466111		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000376113		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000346226		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000352848		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000393041		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000348750		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000357970		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000259238		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000393040		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000351659		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000316724		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000339490	ENST00000409400		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
5CDS-5UTR	ENST00000339490	ENST00000466111		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000376113		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000346226		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000352848		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000393041		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000348750		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000357970		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000259238		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000393040		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000351659		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000316724		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000373539	ENST00000409400		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
5CDS-5UTR	ENST00000373539	ENST00000466111		TCGA	LD	SARC	TCGA-DX-A23R-01A	PHKA1	chrX	71872394	-	BIN1	chr2	127819773	-
In-frame	ENST00000374820	ENST00000538132		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
In-frame	ENST00000374820	ENST00000217426		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
5CDS-intron	ENST00000374820	ENST00000468908		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
Frame-shit	ENST00000452740	ENST00000538132		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
Frame-shit	ENST00000452740	ENST00000217426		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
5CDS-intron	ENST00000452740	ENST00000468908		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
intron-3CDS	ENST00000480175	ENST00000538132		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
intron-3CDS	ENST00000480175	ENST00000217426		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
intron-intron	ENST00000480175	ENST00000468908		TCGA	LD	SARC	TCGA-DX-A23R-01A	PIGU	chr20	33203846	-	AHCY	chr20	32873440	-
Frame-shit	ENST00000549856	ENST00000549982		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000549856	ENST00000361630		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000549856	ENST00000552217		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549856	ENST00000393128		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549856	ENST00000547098		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549856	ENST00000548545		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000549856	ENST00000552938		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000344636	ENST00000549982		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000344636	ENST00000361630		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000344636	ENST00000552217		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000344636	ENST00000393128		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000344636	ENST00000547098		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000344636	ENST00000548545		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000344636	ENST00000552938		TCGA	LD	SARC	TCGA-DX-A23R-01A	PLEKHG7	chr12	93135368	+	MRPL42	chr12	93894952	+
5UTR-3CDS	ENST00000441964	ENST00000478136		TCGA	LD	SARC	TCGA-DX-A23R-01A	POMGNT2	chr3	43147328	-	FAM19A1	chr3	68466430	+
5UTR-3CDS	ENST00000441964	ENST00000496687		TCGA	LD	SARC	TCGA-DX-A23R-01A	POMGNT2	chr3	43147328	-	FAM19A1	chr3	68466430	+
5UTR-3UTR	ENST00000441964	ENST00000491017		TCGA	LD	SARC	TCGA-DX-A23R-01A	POMGNT2	chr3	43147328	-	FAM19A1	chr3	68466430	+
5UTR-3CDS	ENST00000344697	ENST00000478136		TCGA	LD	SARC	TCGA-DX-A23R-01A	POMGNT2	chr3	43147328	-	FAM19A1	chr3	68466430	+
5UTR-3CDS	ENST00000344697	ENST00000496687		TCGA	LD	SARC	TCGA-DX-A23R-01A	POMGNT2	chr3	43147328	-	FAM19A1	chr3	68466430	+
5UTR-3UTR	ENST00000344697	ENST00000491017		TCGA	LD	SARC	TCGA-DX-A23R-01A	POMGNT2	chr3	43147328	-	FAM19A1	chr3	68466430	+
In-frame	ENST00000549190	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000549190	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000549190	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000549190	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000549190	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000395580	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000395580	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000395580	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000395580	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000395580	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000337898	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000337898	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000337898	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000337898	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000337898	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000358314	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000358314	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000358314	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000358314	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000358314	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000395568	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000395568	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000395568	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000395568	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000395568	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000256678	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000256678	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000256678	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000256678	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000256678	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000449194	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000449194	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000449194	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000449194	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000449194	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000552761	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000552761	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000552761	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000552761	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000552761	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000317560	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000317560	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000317560	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000317560	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000317560	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000432191	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000432191	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
In-frame	ENST00000432191	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000432191	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-intron	ENST00000432191	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000550535	ENST00000550746		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000550535	ENST00000319106		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
intron-3CDS	ENST00000550535	ENST00000485960		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
intron-5UTR	ENST00000550535	ENST00000393309		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
intron-intron	ENST00000550535	ENST00000548679		TCGA	LD	SARC	TCGA-DX-A23R-01A	PPHLN1	chr12	42792796	+	TBC1D15	chr12	72265850	+
5CDS-5UTR	ENST00000382004	ENST00000381137		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000382004	ENST00000388918		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000382004	ENST00000381136		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000382004	ENST00000473504		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000358730	ENST00000381137		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000358730	ENST00000388918		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000358730	ENST00000381136		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000358730	ENST00000473504		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000302303	ENST00000381137		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000302303	ENST00000388918		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000302303	ENST00000381136		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000302303	ENST00000473504		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000381984	ENST00000381137		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-5UTR	ENST00000381984	ENST00000388918		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000381984	ENST00000381136		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
5CDS-intron	ENST00000381984	ENST00000473504		TCGA	LD	SARC	TCGA-DX-A23R-01A	RFX3	chr9	3346667	-	TYRP1	chr9	12693912	+
intron-3CDS	ENST00000380006	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000380006	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000380006	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000380006	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000380006	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000356721	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000356721	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000356721	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000356721	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000356721	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000394725	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000394725	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000394725	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000394725	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000394725	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000573005	ENST00000309283		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000573005	ENST00000266682		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-3CDS	ENST00000573005	ENST00000552192		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000573005	ENST00000551388		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
intron-intron	ENST00000573005	ENST00000450363		TCGA	LD	SARC	TCGA-DX-A23R-01A	SIAH1	chr16	48450727	-	SLC6A15	chr12	85267107	-
In-frame	ENST00000398004	ENST00000262061		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
In-frame	ENST00000398004	ENST00000549043		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
In-frame	ENST00000398004	ENST00000552218		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
In-frame	ENST00000398004	ENST00000553231		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
In-frame	ENST00000398004	ENST00000552362		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
In-frame	ENST00000398004	ENST00000455864		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
Frame-shit	ENST00000398004	ENST00000416254		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
5CDS-intron	ENST00000398004	ENST00000549116		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
5CDS-intron	ENST00000398004	ENST00000551779		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
5CDS-3UTR	ENST00000398004	ENST00000548281		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
5CDS-5UTR	ENST00000398004	ENST00000548753		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000262061		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000549043		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000552218		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000553231		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000552362		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000455864		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3CDS	ENST00000538043	ENST00000416254		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-intron	ENST00000538043	ENST00000549116		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-intron	ENST00000538043	ENST00000551779		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-3UTR	ENST00000538043	ENST00000548281		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
3UTR-5UTR	ENST00000538043	ENST00000548753		TCGA	LD	SARC	TCGA-DX-A23R-01A	SLC35E3	chr12	69145970	+	COPZ1	chr12	54735990	+
Frame-shit	ENST00000376387	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
Frame-shit	ENST00000376387	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
Frame-shit	ENST00000376387	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000376387	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000463709	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000463709	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
intron-3CDS	ENST00000463709	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
intron-intron	ENST00000463709	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23R-01A	TM9SF2	chr13	100154031	+	CPM	chr12	69252851	-
5CDS-intron	ENST00000602723	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602723	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602723	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602723	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000400186	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000400186	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000400186	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000400186	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000520002	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000520002	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000520002	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000520002	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602557	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602557	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602557	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000602557	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000537824	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000537824	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000537824	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000537824	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000542608	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000542608	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000542608	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000542608	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000539096	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000539096	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000539096	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-intron	ENST00000539096	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
intron-intron	ENST00000523387	ENST00000518852		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
intron-intron	ENST00000523387	ENST00000240139		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
intron-intron	ENST00000523387	ENST00000289963		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
intron-intron	ENST00000523387	ENST00000397775		TCGA	LD	SARC	TCGA-DX-A23T-01A	CSMD1	chr8	4851854	-	PPP3CC	chr8	22384905	+
5CDS-5UTR	ENST00000452339	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000430974	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000367895	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000355167	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000355286	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000531901	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000525849	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
5CDS-5UTR	ENST00000431403	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
intron-5UTR	ENST00000441015	ENST00000334289		TCGA	LD	SARC	TCGA-DX-A23T-01A	EYA4	chr6	133595951	+	ANGPTL5	chr11	101778732	-
intron-5UTR	ENST00000327040	ENST00000398056		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000327040	ENST00000522444		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000327040	ENST00000398054		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000327040	ENST00000381840		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000327040	ENST00000381841		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000327040	ENST00000427924		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000327040	ENST00000518650		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000398056		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000522444		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000398054		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000381840		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000381841		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000427924		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000440756	ENST00000518650		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000398056		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000522444		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000398054		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000381840		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000381841		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000427924		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000286485	ENST00000518650		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000398056		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000522444		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000398054		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000381840		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000381841		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000427924		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000428502	ENST00000518650		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000398056		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000522444		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000398054		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000381840		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000381841		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000427924		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000523619	ENST00000518650		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000398056		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000522444		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000398054		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000381840		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000381841		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000427924		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
intron-5UTR	ENST00000520789	ENST00000518650		TCGA	LD	SARC	TCGA-DX-A23T-01A	PSD3	chr8	18711608	-	FGL1	chr8	17743080	-
5CDS-3UTR	ENST00000367871	ENST00000451810		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000367871	ENST00000448559		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000367871	ENST00000448433		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000367871	ENST00000373170		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000237264	ENST00000451810		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000237264	ENST00000448559		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000237264	ENST00000448433		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
5CDS-3UTR	ENST00000237264	ENST00000373170		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
3UTR-3UTR	ENST00000477527	ENST00000451810		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
3UTR-3UTR	ENST00000477527	ENST00000448559		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
3UTR-3UTR	ENST00000477527	ENST00000448433		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
3UTR-3UTR	ENST00000477527	ENST00000373170		TCGA	LD	SARC	TCGA-DX-A23T-01A	TBPL1	chr6	134304018	+	TDRG1	chr6	40347021	+
intron-3CDS	ENST00000553221	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000553221	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
intron-intron	ENST00000553221	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000257910	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000257910	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547992	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547992	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547992	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547992	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547992	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547992	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547992	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547992	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547992	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547472	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547472	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547472	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
In-frame	ENST00000547472	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547472	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547472	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547472	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547472	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000547472	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A23T-01A	TSPAN31	chr12	58139000	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000367463	ENST00000526421		TCGA	LD	SARC	TCGA-DX-A23T-01A	UST	chr6	149068813	+	BIRC3	chr11	102207491	+
5CDS-intron	ENST00000367463	ENST00000263464		TCGA	LD	SARC	TCGA-DX-A23T-01A	UST	chr6	149068813	+	BIRC3	chr11	102207491	+
5CDS-intron	ENST00000367463	ENST00000532808		TCGA	LD	SARC	TCGA-DX-A23T-01A	UST	chr6	149068813	+	BIRC3	chr11	102207491	+
intron-intron	ENST00000466695	ENST00000526421		TCGA	LD	SARC	TCGA-DX-A23T-01A	UST	chr6	149068813	+	BIRC3	chr11	102207491	+
intron-intron	ENST00000466695	ENST00000263464		TCGA	LD	SARC	TCGA-DX-A23T-01A	UST	chr6	149068813	+	BIRC3	chr11	102207491	+
intron-intron	ENST00000466695	ENST00000532808		TCGA	LD	SARC	TCGA-DX-A23T-01A	UST	chr6	149068813	+	BIRC3	chr11	102207491	+
Frame-shit	ENST00000368069	ENST00000302035		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000368069	ENST00000235739		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000368069	ENST00000538290		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000368069	ENST00000355199		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000241704	ENST00000302035		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000241704	ENST00000235739		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000241704	ENST00000538290		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
Frame-shit	ENST00000241704	ENST00000355199		TCGA	LD	SARC	TCGA-DX-A23U-01A	COPA	chr1	160275223	-	SLAMF1	chr1	160604687	-
intron-5UTR	ENST00000493714	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN2	chr1	304560	+	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000493714	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN2	chr1	304560	+	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000493714	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN2	chr1	304560	+	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000493714	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN2	chr1	304560	+	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000493714	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN2	chr1	304560	+	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000393567	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000393567	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000393567	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000393567	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000393567	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448089	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448089	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448089	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448089	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448089	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448691	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448691	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448691	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448691	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000448691	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000321489	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000321489	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000321489	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000321489	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000321489	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000538248	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000538248	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000538248	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000538248	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000538248	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000541601	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000541601	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000541601	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000541601	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000541601	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000288168	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000288168	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000288168	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000288168	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000288168	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000393550	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000393550	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000393550	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000393550	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000393550	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000543639	ENST00000326956		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000543639	ENST00000417664		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000543639	ENST00000371320		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000543639	ENST00000371319		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000543639	ENST00000357475		TCGA	LD	SARC	TCGA-DX-A23U-01A	HYDIN	chr16	71094407	-	SSBP3	chr1	54747200	-
In-frame	ENST00000306052	ENST00000393567		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000448089		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000448691		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000321489		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000538248		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000541601		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000288168		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000306052	ENST00000393550		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5CDS-intron	ENST00000306052	ENST00000543639		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000393567		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000448089		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000448691		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000321489		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000538248		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000541601		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000288168		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000371454	ENST00000393550		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5CDS-intron	ENST00000371454	ENST00000543639		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000393567		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000448089		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000448691		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000321489		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000538248		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000541601		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000288168		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000465675	ENST00000393550		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-intron	ENST00000465675	ENST00000543639		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000393567		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000448089		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000448691		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000321489		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000538248		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000541601		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000288168		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000354412	ENST00000393550		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5CDS-intron	ENST00000354412	ENST00000543639		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000393567		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000448089		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000448691		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000321489		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000538248		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000541601		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000288168		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
In-frame	ENST00000347547	ENST00000393550		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5CDS-intron	ENST00000347547	ENST00000543639		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000393567		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000448089		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000448691		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000321489		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000538248		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000541601		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000288168		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-3CDS	ENST00000460214	ENST00000393550		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
intron-intron	ENST00000460214	ENST00000543639		TCGA	LD	SARC	TCGA-DX-A23U-01A	LRP8	chr1	53792545	-	HYDIN	chr16	71127838	-
5UTR-3CDS	ENST00000360472	ENST00000458013		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000360472	ENST00000368843		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000360472	ENST00000368838		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-intron	ENST00000360472	ENST00000482791		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000368077	ENST00000458013		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000368077	ENST00000368843		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000368077	ENST00000368838		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-intron	ENST00000368077	ENST00000482791		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000368076	ENST00000458013		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000368076	ENST00000368843		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-3CDS	ENST00000368076	ENST00000368838		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
5UTR-intron	ENST00000368076	ENST00000482791		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
intron-3CDS	ENST00000488858	ENST00000458013		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
intron-3CDS	ENST00000488858	ENST00000368843		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
intron-3CDS	ENST00000488858	ENST00000368838		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
intron-intron	ENST00000488858	ENST00000482791		TCGA	LD	SARC	TCGA-DX-A23U-01A	PEA15	chr1	160175312	+	SNX27	chr1	151630711	+
In-frame	ENST00000340385	ENST00000367714		TCGA	LD	SARC	TCGA-DX-A23U-01A	PRDX6	chr1	173450621	+	SLC9C2	chr1	173495853	-
5CDS-5UTR	ENST00000340385	ENST00000466087		TCGA	LD	SARC	TCGA-DX-A23U-01A	PRDX6	chr1	173450621	+	SLC9C2	chr1	173495853	-
5CDS-3UTR	ENST00000340385	ENST00000536496		TCGA	LD	SARC	TCGA-DX-A23U-01A	PRDX6	chr1	173450621	+	SLC9C2	chr1	173495853	-
3UTR-3CDS	ENST00000470017	ENST00000367714		TCGA	LD	SARC	TCGA-DX-A23U-01A	PRDX6	chr1	173450621	+	SLC9C2	chr1	173495853	-
3UTR-5UTR	ENST00000470017	ENST00000466087		TCGA	LD	SARC	TCGA-DX-A23U-01A	PRDX6	chr1	173450621	+	SLC9C2	chr1	173495853	-
3UTR-3UTR	ENST00000470017	ENST00000536496		TCGA	LD	SARC	TCGA-DX-A23U-01A	PRDX6	chr1	173450621	+	SLC9C2	chr1	173495853	-
intron-3CDS	ENST00000290524	ENST00000271732		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000290524	ENST00000540514		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000290524	ENST00000479757		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000368870	ENST00000271732		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000368870	ENST00000540514		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000368870	ENST00000479757		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000452671	ENST00000271732		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000452671	ENST00000540514		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000452671	ENST00000479757		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000452513	ENST00000271732		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000452513	ENST00000540514		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000452513	ENST00000479757		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000478564	ENST00000271732		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-3CDS	ENST00000478564	ENST00000540514		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
intron-intron	ENST00000478564	ENST00000479757		TCGA	LD	SARC	TCGA-DX-A23U-01A	RFX5	chr1	151315550	-	GOLPH3L	chr1	150621224	-
In-frame	ENST00000404826	ENST00000340611		TCGA	LD	SARC	TCGA-DX-A23U-01A	SDK1	chr7	3861215	+	BRAT1	chr7	2583596	-
5CDS-intron	ENST00000404826	ENST00000473879		TCGA	LD	SARC	TCGA-DX-A23U-01A	SDK1	chr7	3861215	+	BRAT1	chr7	2583596	-
In-frame	ENST00000389531	ENST00000340611		TCGA	LD	SARC	TCGA-DX-A23U-01A	SDK1	chr7	3861215	+	BRAT1	chr7	2583596	-
5CDS-intron	ENST00000389531	ENST00000473879		TCGA	LD	SARC	TCGA-DX-A23U-01A	SDK1	chr7	3861215	+	BRAT1	chr7	2583596	-
intron-3CDS	ENST00000466611	ENST00000340611		TCGA	LD	SARC	TCGA-DX-A23U-01A	SDK1	chr7	3861215	+	BRAT1	chr7	2583596	-
intron-intron	ENST00000466611	ENST00000473879		TCGA	LD	SARC	TCGA-DX-A23U-01A	SDK1	chr7	3861215	+	BRAT1	chr7	2583596	-
In-frame	ENST00000458013	ENST00000371486		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
5CDS-3UTR	ENST00000458013	ENST00000468572		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
In-frame	ENST00000368843	ENST00000371486		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
5CDS-3UTR	ENST00000368843	ENST00000468572		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
intron-3CDS	ENST00000368838	ENST00000371486		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
intron-3UTR	ENST00000368838	ENST00000468572		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
intron-3CDS	ENST00000482791	ENST00000371486		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
intron-3UTR	ENST00000482791	ENST00000468572		TCGA	LD	SARC	TCGA-DX-A23U-01A	SNX27	chr1	151584988	+	CPT2	chr1	53666391	+
In-frame	ENST00000283645	ENST00000257177		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
In-frame	ENST00000283645	ENST00000371544		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
5CDS-intron	ENST00000283645	ENST00000371541		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
5CDS-intron	ENST00000283645	ENST00000355809		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
In-frame	ENST00000453949	ENST00000257177		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
In-frame	ENST00000453949	ENST00000371544		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
5CDS-intron	ENST00000453949	ENST00000371541		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
5CDS-intron	ENST00000453949	ENST00000355809		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
intron-3CDS	ENST00000559846	ENST00000257177		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
intron-3CDS	ENST00000559846	ENST00000371544		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
intron-intron	ENST00000559846	ENST00000371541		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
intron-intron	ENST00000559846	ENST00000355809		TCGA	LD	SARC	TCGA-DX-A23U-01A	TUBGCP5	chr15	22870003	-	ZCCHC11	chr1	52902650	-
5UTR-5UTR	ENST00000357206	ENST00000417354		TCGA	LD	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52608075	+	DNM3OS	chr1	172113577	-
5UTR-5UTR	ENST00000287727	ENST00000417354		TCGA	LD	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52608075	+	DNM3OS	chr1	172113577	-
intron-5UTR	ENST00000371591	ENST00000417354		TCGA	LD	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52608075	+	DNM3OS	chr1	172113577	-
intron-5UTR	ENST00000469134	ENST00000417354		TCGA	LD	SARC	TCGA-DX-A23U-01A	ZFYVE9	chr1	52608075	+	DNM3OS	chr1	172113577	-
5UTR-3CDS	ENST00000485760	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
5UTR-3UTR	ENST00000485760	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
5UTR-3UTR	ENST00000485760	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
5UTR-3UTR	ENST00000485760	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
5UTR-intron	ENST00000485760	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000371236	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371236	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371236	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371236	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000371236	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000371234	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371234	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371234	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371234	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000371234	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000420954	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000420954	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000420954	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000420954	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000420954	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000439789	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000439789	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000439789	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000439789	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000439789	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000414851	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000414851	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000414851	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000414851	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000414851	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000371231	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371231	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371231	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371231	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000371231	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000371230	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371230	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371230	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000371230	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000371230	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	DAB1	chr1	58971732	-	CDK4	chr12	58142400	-
In-frame	ENST00000343958	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
In-frame	ENST00000343958	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
5CDS-intron	ENST00000343958	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
5CDS-intron	ENST00000343958	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
In-frame	ENST00000546711	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
In-frame	ENST00000546711	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
5CDS-intron	ENST00000546711	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
5CDS-intron	ENST00000546711	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
In-frame	ENST00000549499	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
In-frame	ENST00000549499	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
5CDS-intron	ENST00000549499	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
5CDS-intron	ENST00000549499	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
intron-3CDS	ENST00000550368	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
intron-3CDS	ENST00000550368	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
intron-intron	ENST00000550368	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
intron-intron	ENST00000550368	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A23V-01A	FGD6	chr12	95528515	-	TBC1D30	chr12	65232463	+
Frame-shit	ENST00000299314	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
Frame-shit	ENST00000299314	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
Frame-shit	ENST00000299314	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
5CDS-intron	ENST00000299314	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000549940	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000549940	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000549940	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-intron	ENST00000549940	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000392919	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000392919	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000392919	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-intron	ENST00000392919	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000549165	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000549165	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-3CDS	ENST00000549165	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
intron-intron	ENST00000549165	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A23V-01A	GNPTAB	chr12	102142879	-	FGD6	chr12	95566520	-
Frame-shit	ENST00000548256	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000548256	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000548256	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5CDS-intron	ENST00000548256	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5UTR-3CDS	ENST00000551420	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5UTR-3CDS	ENST00000551420	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5UTR-3CDS	ENST00000551420	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5UTR-intron	ENST00000551420	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000300209	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000300209	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000300209	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5CDS-intron	ENST00000300209	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
intron-3CDS	ENST00000552307	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
intron-3CDS	ENST00000552307	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
intron-3CDS	ENST00000552307	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
intron-intron	ENST00000552307	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000333012	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000333012	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000333012	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
5CDS-intron	ENST00000333012	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A23V-01A	METTL21B	chr12	58166911	+	LTA4H	chr12	96418325	-
Frame-shit	ENST00000358603	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000358603	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000358603	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000358603	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-intron	ENST00000358603	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
Frame-shit	ENST00000371226	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000371226	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000371226	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-3UTR	ENST00000371226	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
5CDS-intron	ENST00000371226	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000467063	ENST00000257904		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000467063	ENST00000312990		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000467063	ENST00000549606		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3UTR	ENST00000467063	ENST00000540325		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-intron	ENST00000467063	ENST00000551888		TCGA	LD	SARC	TCGA-DX-A23V-01A	OMA1	chr1	58971732	-	CDK4	chr12	58142400	-
intron-3CDS	ENST00000550067	ENST00000355312		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000356259		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000338373		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000360185		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000343646		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000354574		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000457474		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000361006		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000553118		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-3CDS	ENST00000550067	ENST00000551209		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-intron	ENST00000550067	ENST00000548655		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-intron	ENST00000550067	ENST00000547815		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
intron-intron	ENST00000550067	ENST00000320063		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000355312		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000356259		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000338373		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000360185		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000343646		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000354574		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000457474		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000361006		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000553118		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000360820	ENST00000551209		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
5CDS-intron	ENST00000360820	ENST00000548655		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
5CDS-intron	ENST00000360820	ENST00000547815		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
5CDS-intron	ENST00000360820	ENST00000320063		TCGA	LD	SARC	TCGA-DX-A23V-01A	SCYL2	chr12	100732362	+	GIT2	chr12	110399490	-
Frame-shit	ENST00000353364	ENST00000547776		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000329257		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000547010		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000341752		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000549558		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000550693		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000549025		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000549493		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000547446		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000333732		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000546568		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000332712		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000353364	ENST00000546960		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
5CDS-intron	ENST00000353364	ENST00000550833		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000547776		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000329257		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000547010		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000341752		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000549558		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000550693		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000549025		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000549493		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000547446		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000333732		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000546568		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000332712		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000280377	ENST00000546960		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
5CDS-intron	ENST00000280377	ENST00000550833		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000547776		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000329257		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000547010		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000341752		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000549558		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000550693		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000549025		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000549493		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000547446		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000333732		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000546568		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000332712		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000393654	ENST00000546960		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
5CDS-intron	ENST00000393654	ENST00000550833		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000547776		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000329257		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000547010		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000341752		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000549558		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000550693		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000549025		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000549493		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000547446		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000333732		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000546568		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000332712		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-3CDS	ENST00000550632	ENST00000546960		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
intron-intron	ENST00000550632	ENST00000550833		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000547776		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000329257		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000547010		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000341752		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000549558		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000550693		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000549025		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000549493		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000547446		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000333732		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000546568		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000332712		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000312635	ENST00000546960		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
5CDS-intron	ENST00000312635	ENST00000550833		TCGA	LD	SARC	TCGA-DX-A23V-01A	USP15	chr12	62719714	+	ANKS1B	chr12	99145300	-
Frame-shit	ENST00000247843	ENST00000327680		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
In-frame	ENST00000247843	ENST00000378128		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
Frame-shit	ENST00000247843	ENST00000541394		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
In-frame	ENST00000247843	ENST00000543784		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000247843	ENST00000537257		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000247843	ENST00000358383		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000247843	ENST00000392911		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-3UTR	ENST00000247843	ENST00000535811		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
Frame-shit	ENST00000548020	ENST00000327680		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
In-frame	ENST00000548020	ENST00000378128		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
Frame-shit	ENST00000548020	ENST00000541394		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
In-frame	ENST00000548020	ENST00000543784		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000548020	ENST00000537257		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000548020	ENST00000358383		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-intron	ENST00000548020	ENST00000392911		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
5CDS-3UTR	ENST00000548020	ENST00000535811		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	PARPBP	chr12	102589729	+
In-frame	ENST00000247843	ENST00000353364		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
In-frame	ENST00000247843	ENST00000280377		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
In-frame	ENST00000247843	ENST00000393654		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
5CDS-intron	ENST00000247843	ENST00000550632		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
5CDS-intron	ENST00000247843	ENST00000312635		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
In-frame	ENST00000548020	ENST00000353364		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
In-frame	ENST00000548020	ENST00000280377		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
In-frame	ENST00000548020	ENST00000393654		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
5CDS-intron	ENST00000548020	ENST00000550632		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
5CDS-intron	ENST00000548020	ENST00000312635		TCGA	LD	SARC	TCGA-DX-A23V-01A	YEATS4	chr12	69756687	+	USP15	chr12	62719653	+
5UTR-3CDS	ENST00000331471	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000331471	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000331471	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000331471	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
intron-3CDS	ENST00000488961	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
intron-3CDS	ENST00000488961	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
intron-intron	ENST00000488961	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
intron-intron	ENST00000488961	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000330891	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000330891	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000330891	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000330891	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000553096	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000553096	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000553096	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000553096	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000476098	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000476098	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000476098	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000476098	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000266661	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000266661	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000266661	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000266661	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000551160	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000551160	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000551160	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000551160	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000393365	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000393365	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000393365	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000393365	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000533674	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000533674	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000533674	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000533674	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A23Y-01A	BEST3	chr12	70092985	-	MYRFL	chr12	70297424	+
5CDS-5UTR	ENST00000182096	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000182096	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000182096	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000182096	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000485253	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000485253	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-intron	ENST00000485253	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000485253	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000419587	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000419587	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-intron	ENST00000419587	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000419587	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000389622	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000389622	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-intron	ENST00000389622	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000389622	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Y-01A	CRYBG3	chr3	97600063	+	FRS2	chr12	69924645	+
Frame-shit	ENST00000297579	ENST00000220764		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5CDS-intron	ENST00000297579	ENST00000519007		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5CDS-intron	ENST00000297579	ENST00000522161		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
intron-3CDS	ENST00000521716	ENST00000220764		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
intron-intron	ENST00000521716	ENST00000519007		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
intron-intron	ENST00000521716	ENST00000522161		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
In-frame	ENST00000521971	ENST00000220764		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5CDS-intron	ENST00000521971	ENST00000519007		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5CDS-intron	ENST00000521971	ENST00000522161		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
3UTR-3CDS	ENST00000521999	ENST00000220764		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
3UTR-intron	ENST00000521999	ENST00000519007		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
3UTR-intron	ENST00000521999	ENST00000522161		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
In-frame	ENST00000519682	ENST00000220764		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5CDS-intron	ENST00000519682	ENST00000519007		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5CDS-intron	ENST00000519682	ENST00000522161		TCGA	LD	SARC	TCGA-DX-A23Y-01A	DCAF13	chr8	104439480	+	DECR1	chr8	91049069	+
5UTR-5UTR	ENST00000299293	ENST00000442339		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000299293	ENST00000409004		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000299293	ENST00000409799		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000299293	ENST00000409445		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-5UTR	ENST00000299293	ENST00000393284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-5UTR	ENST00000549921	ENST00000442339		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000549921	ENST00000409004		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000549921	ENST00000409799		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000549921	ENST00000409445		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-5UTR	ENST00000549921	ENST00000393284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-5UTR	ENST00000550389	ENST00000442339		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000550389	ENST00000409004		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000550389	ENST00000409799		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-intron	ENST00000550389	ENST00000409445		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-5UTR	ENST00000550389	ENST00000393284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
intron-5UTR	ENST00000397997	ENST00000442339		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
intron-intron	ENST00000397997	ENST00000409004		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
intron-intron	ENST00000397997	ENST00000409799		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
intron-intron	ENST00000397997	ENST00000409445		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
intron-5UTR	ENST00000397997	ENST00000393284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	FRS2	chr12	69864310	+	CAPS2	chr12	75715356	-
5UTR-3CDS	ENST00000548312	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000548312	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000548312	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-intron	ENST00000548312	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000242607	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000242607	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000242607	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-intron	ENST00000242607	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000356742	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000356742	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000356742	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
intron-intron	ENST00000356742	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000439744	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000439744	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000439744	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5UTR-intron	ENST00000439744	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A23Y-01A	HVCN1	chr12	111126430	-	CPM	chr12	69279669	-
5CDS-intron	ENST00000462284	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000462284	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000462284	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000356290	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000356290	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000356290	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000540827	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000540827	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000540827	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000258149	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000258149	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000258149	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000428863	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000428863	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000428863	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000393412	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000393412	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000393412	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000258148	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000258148	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000258148	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000544561	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000544561	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000544561	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000393410	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000393410	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000393410	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000393413	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000393413	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000393413	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000517852	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000517852	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000517852	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000545204	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000545204	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000545204	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000350057	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000350057	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000350057	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000360430	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000360430	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000360430	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000299252	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-intron	ENST00000299252	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
5CDS-5UTR	ENST00000299252	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000348801	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000348801	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000348801	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000478070	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000478070	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000478070	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000544125	ENST00000298699		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-intron	ENST00000544125	ENST00000550553		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-5UTR	ENST00000544125	ENST00000546547		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MDM2	chr12	69207408	+	C12orf50	chr12	88424014	-
intron-3CDS	ENST00000372133	ENST00000368761		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-3CDS	ENST00000372133	ENST00000359831		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-5UTR	ENST00000372133	ENST00000392556		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-5UTR	ENST00000372133	ENST00000340026		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-5UTR	ENST00000372133	ENST00000368731		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-intron	ENST00000372133	ENST00000368735		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-3CDS	ENST00000372116	ENST00000368761		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-3CDS	ENST00000372116	ENST00000359831		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-5UTR	ENST00000372116	ENST00000392556		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-5UTR	ENST00000372116	ENST00000340026		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-5UTR	ENST00000372116	ENST00000368731		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
intron-intron	ENST00000372116	ENST00000368735		TCGA	LD	SARC	TCGA-DX-A23Y-01A	MRPS18A	chr6	43639577	-	TRAF3IP2	chr6	111894186	-
5UTR-3CDS	ENST00000550187	ENST00000434710		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NDUFA12	chr12	95387946	-	IGHV3-43	chr14	106926495	-
intron-3CDS	ENST00000547157	ENST00000434710		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NDUFA12	chr12	95387946	-	IGHV3-43	chr14	106926495	-
Frame-shit	ENST00000327772	ENST00000434710		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NDUFA12	chr12	95387946	-	IGHV3-43	chr14	106926495	-
intron-3CDS	ENST00000547986	ENST00000434710		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NDUFA12	chr12	95387946	-	IGHV3-43	chr14	106926495	-
In-frame	ENST00000369646	ENST00000462284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
In-frame	ENST00000369646	ENST00000356290		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000540827		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000258149		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000428863		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000393412		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000258148		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000544561		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000393410		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000393413		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000517852		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000545204		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000350057		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000360430		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000299252		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000348801		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000478070		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369646	ENST00000544125		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
In-frame	ENST00000257770	ENST00000462284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
In-frame	ENST00000257770	ENST00000356290		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000540827		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000258149		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000428863		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000393412		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000258148		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000544561		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000393410		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000393413		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000517852		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000545204		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000350057		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000360430		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000299252		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000348801		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000478070		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000257770	ENST00000544125		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
In-frame	ENST00000369651	ENST00000462284		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
In-frame	ENST00000369651	ENST00000356290		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000540827		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000258149		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000428863		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000393412		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000258148		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000544561		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000393410		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000393413		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000517852		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000545204		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000350057		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000360430		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000299252		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000348801		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000478070		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-intron	ENST00000369651	ENST00000544125		TCGA	LD	SARC	TCGA-DX-A23Y-01A	NT5E	chr6	86160196	+	MDM2	chr12	69207334	+
5CDS-5UTR	ENST00000219097	ENST00000303383		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
5CDS-intron	ENST00000219097	ENST00000564272		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
3UTR-5UTR	ENST00000568364	ENST00000303383		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
3UTR-intron	ENST00000568364	ENST00000564272		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
5CDS-5UTR	ENST00000566860	ENST00000303383		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
5CDS-intron	ENST00000566860	ENST00000564272		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
3UTR-5UTR	ENST00000575571	ENST00000303383		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
3UTR-intron	ENST00000575571	ENST00000564272		TCGA	LD	SARC	TCGA-DX-A23Y-01A	ORC6	chr16	46729997	+	SHCBP1	chr16	46655321	-
In-frame	ENST00000585603	ENST00000228438		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
5CDS-intron	ENST00000585603	ENST00000538152		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
5UTR-3CDS	ENST00000221770	ENST00000228438		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
5UTR-intron	ENST00000221770	ENST00000538152		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
5UTR-3CDS	ENST00000392279	ENST00000228438		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
5UTR-intron	ENST00000392279	ENST00000538152		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
3UTR-3CDS	ENST00000591824	ENST00000228438		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
3UTR-intron	ENST00000591824	ENST00000538152		TCGA	LD	SARC	TCGA-DX-A23Y-01A	POP4	chr19	30097232	+	CLEC2B	chr12	10010236	-
5CDS-5UTR	ENST00000549396	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000550584	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000549325	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000545296	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000550359	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000407050	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000333447	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000548586	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000443686	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
5CDS-5UTR	ENST00000552948	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000541570	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
intron-5UTR	ENST00000541017	ENST00000372014		TCGA	LD	SARC	TCGA-DX-A23Y-01A	PPFIA2	chr12	82070570	-	MRPL14	chr6	44084366	-
Frame-shit	ENST00000353487	ENST00000229214		TCGA	LD	SARC	TCGA-DX-A23Y-01A	SPPL3	chr12	121341648	-	KRR1	chr12	75902226	-
Frame-shit	ENST00000353487	ENST00000438169		TCGA	LD	SARC	TCGA-DX-A23Y-01A	SPPL3	chr12	121341648	-	KRR1	chr12	75902226	-
5UTR-3CDS	ENST00000499676	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000499676	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-intron	ENST00000499676	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000489671	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000489671	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-intron	ENST00000489671	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000486111	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000486111	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-intron	ENST00000486111	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000477292	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000477292	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-intron	ENST00000477292	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000495310	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000495310	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-intron	ENST00000495310	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000467072	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000467072	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-intron	ENST00000467072	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000317104	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000317104	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-intron	ENST00000317104	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000310282	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000310282	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-intron	ENST00000310282	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000479040	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000479040	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-intron	ENST00000479040	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000397991	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-3CDS	ENST00000397991	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
intron-intron	ENST00000397991	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000464782	ENST00000285737		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-3CDS	ENST00000464782	ENST00000535754		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
5UTR-intron	ENST00000464782	ENST00000564259		TCGA	LD	SARC	TCGA-DX-A23Y-01A	TFDP2	chr3	141868025	-	LONP2	chr16	48296689	+
Frame-shit	ENST00000372954	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372954	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372954	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372954	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372954	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000393608	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000393608	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000393608	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000393608	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000393608	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000541172	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000541172	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000541172	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000541172	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000541172	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000357558	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000357558	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000357558	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000357558	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000357558	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000325721	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000325721	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000325721	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000325721	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000325721	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000538431	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000538431	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000538431	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000538431	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000538431	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000277465	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000277465	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000277465	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000277465	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000277465	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000372948	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000372948	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000372948	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000372948	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
In-frame	ENST00000372948	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372938	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372938	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372938	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372938	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
Frame-shit	ENST00000372938	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
5UTR-3CDS	ENST00000476727	ENST00000495313		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
5UTR-3CDS	ENST00000476727	ENST00000320188		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
5UTR-3CDS	ENST00000476727	ENST00000608796		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
5UTR-3CDS	ENST00000476727	ENST00000419867		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
5UTR-3CDS	ENST00000476727	ENST00000418976		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CIZ1	chr9	130947826	-	SWI5	chr9	131046789	+
5CDS-5UTR	ENST00000398073	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000398073	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-intron	ENST00000398073	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000398073	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000548823	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000548823	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-intron	ENST00000548823	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000548823	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
intron-5UTR	ENST00000547701	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
intron-5UTR	ENST00000547701	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
intron-intron	ENST00000547701	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
intron-5UTR	ENST00000547701	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A23Z-01A	CTDSP2	chr12	58240155	-	FRS2	chr12	69924645	+
Frame-shit	ENST00000322536	ENST00000310653		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000322536	ENST00000336083		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000322536	ENST00000536566		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000322536	ENST00000541588		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000526794	ENST00000310653		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000526794	ENST00000336083		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000526794	ENST00000536566		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
Frame-shit	ENST00000526794	ENST00000541588		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
intron-3CDS	ENST00000534221	ENST00000310653		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
intron-3CDS	ENST00000534221	ENST00000336083		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
intron-3CDS	ENST00000534221	ENST00000536566		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
intron-3CDS	ENST00000534221	ENST00000541588		TCGA	LD	SARC	TCGA-DX-A23Z-01A	DDX10	chr11	108722936	+	RAB6A	chr11	73389007	-
5UTR-3CDS	ENST00000377560	ENST00000526343		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000377560	ENST00000282441		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000377560	ENST00000537274		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000377560	ENST00000345877		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000377560	ENST00000531439		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000377560	ENST00000524575		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-intron	ENST00000377560	ENST00000528834		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000430131	ENST00000526343		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000430131	ENST00000282441		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000430131	ENST00000537274		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000430131	ENST00000345877		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000430131	ENST00000531439		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000430131	ENST00000524575		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-intron	ENST00000430131	ENST00000528834		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000550722	ENST00000526343		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000550722	ENST00000282441		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000550722	ENST00000537274		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000550722	ENST00000345877		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000550722	ENST00000531439		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-3CDS	ENST00000550722	ENST00000524575		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
5UTR-intron	ENST00000550722	ENST00000528834		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-3CDS	ENST00000549141	ENST00000526343		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-3CDS	ENST00000549141	ENST00000282441		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-3CDS	ENST00000549141	ENST00000537274		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-3CDS	ENST00000549141	ENST00000345877		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-3CDS	ENST00000549141	ENST00000531439		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-3CDS	ENST00000549141	ENST00000524575		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
intron-intron	ENST00000549141	ENST00000528834		TCGA	LD	SARC	TCGA-DX-A23Z-01A	HECTD4	chr12	112819756	-	YAP1	chr11	102076624	+
Frame-shit	ENST00000534064	ENST00000358470		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
Frame-shit	ENST00000534064	ENST00000392320		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
5CDS-intron	ENST00000534064	ENST00000470708		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
5CDS-intron	ENST00000534064	ENST00000409995		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
Frame-shit	ENST00000535943	ENST00000358470		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
Frame-shit	ENST00000535943	ENST00000392320		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
5CDS-intron	ENST00000535943	ENST00000470708		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
5CDS-intron	ENST00000535943	ENST00000409995		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-3CDS	ENST00000525931	ENST00000358470		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-3CDS	ENST00000525931	ENST00000392320		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000525931	ENST00000470708		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000525931	ENST00000409995		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-3CDS	ENST00000529807	ENST00000358470		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-3CDS	ENST00000529807	ENST00000392320		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000529807	ENST00000470708		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000529807	ENST00000409995		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-3CDS	ENST00000527522	ENST00000358470		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-3CDS	ENST00000527522	ENST00000392320		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000527522	ENST00000470708		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000527522	ENST00000409995		TCGA	LD	SARC	TCGA-DX-A23Z-01A	INTS4	chr11	77594878	-	STAT4	chr2	192011483	-
intron-intron	ENST00000367469	ENST00000239614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000367469	ENST00000374979		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000367469	ENST00000524950		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000367469	ENST00000526629		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
5CDS-intron	ENST00000367467	ENST00000239614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
5CDS-intron	ENST00000367467	ENST00000374979		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
5CDS-intron	ENST00000367467	ENST00000524950		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
5CDS-intron	ENST00000367467	ENST00000526629		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000470750	ENST00000239614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000470750	ENST00000374979		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000470750	ENST00000524950		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
intron-intron	ENST00000470750	ENST00000526629		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148865954	+	MSANTD2	chr11	124649035	-
Frame-shit	ENST00000367469	ENST00000372371		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148761543	+	POLR3A	chr10	79740031	-
5CDS-intron	ENST00000367469	ENST00000484760		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148761543	+	POLR3A	chr10	79740031	-
Frame-shit	ENST00000367467	ENST00000372371		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148761543	+	POLR3A	chr10	79740031	-
5CDS-intron	ENST00000367467	ENST00000484760		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148761543	+	POLR3A	chr10	79740031	-
3UTR-3CDS	ENST00000470750	ENST00000372371		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148761543	+	POLR3A	chr10	79740031	-
3UTR-intron	ENST00000470750	ENST00000484760		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SASH1	chr6	148761543	+	POLR3A	chr10	79740031	-
5UTR-5UTR	ENST00000264027	ENST00000227135		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
5UTR-5UTR	ENST00000264027	ENST00000532692		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
5UTR-intron	ENST00000264027	ENST00000524614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
5UTR-5UTR	ENST00000534230	ENST00000227135		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
5UTR-5UTR	ENST00000534230	ENST00000532692		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
5UTR-intron	ENST00000534230	ENST00000524614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
intron-5UTR	ENST00000392789	ENST00000227135		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
intron-5UTR	ENST00000392789	ENST00000532692		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
intron-intron	ENST00000392789	ENST00000524614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
intron-5UTR	ENST00000528991	ENST00000227135		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
intron-5UTR	ENST00000528991	ENST00000532692		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
intron-intron	ENST00000528991	ENST00000524614		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SC5D	chr11	121163525	+	SPA17	chr11	124545134	+
5CDS-intron	ENST00000495313	ENST00000321297		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000495313	ENST00000534905		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000495313	ENST00000451353		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000320188	ENST00000321297		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000320188	ENST00000534905		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000320188	ENST00000451353		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000608796	ENST00000321297		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000608796	ENST00000534905		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000608796	ENST00000451353		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000419867	ENST00000321297		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000419867	ENST00000534905		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000419867	ENST00000451353		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000418976	ENST00000321297		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000418976	ENST00000534905		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-intron	ENST00000418976	ENST00000451353		TCGA	LD	SARC	TCGA-DX-A23Z-01A	SWI5	chr9	131048312	+	ATG16L2	chr11	72553662	+
5CDS-3UTR	ENST00000536230	ENST00000304987		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-intron	ENST00000536230	ENST00000533868		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
intron-3UTR	ENST00000392282	ENST00000304987		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
intron-intron	ENST00000392282	ENST00000533868		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-3UTR	ENST00000538427	ENST00000304987		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-intron	ENST00000538427	ENST00000533868		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-3UTR	ENST00000367456	ENST00000304987		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-intron	ENST00000367456	ENST00000533868		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
intron-3UTR	ENST00000461481	ENST00000304987		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
intron-intron	ENST00000461481	ENST00000533868		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-3UTR	ENST00000286332	ENST00000304987		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
5CDS-intron	ENST00000286332	ENST00000533868		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TAB2	chr6	149719198	+	SIK2	chr11	111600981	+
Frame-shit	ENST00000261180	ENST00000324472		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	64015117	-
5CDS-intron	ENST00000261180	ENST00000413230		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	64015117	-
intron-3CDS	ENST00000549138	ENST00000324472		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	64015117	-
intron-intron	ENST00000549138	ENST00000413230		TCGA	LD	SARC	TCGA-DX-A23Z-01A	TRHDE	chr12	72680734	+	DPY19L2	chr12	64015117	-
5CDS-5UTR	ENST00000367463	ENST00000393500		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-5UTR	ENST00000367463	ENST00000393494		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-5UTR	ENST00000367463	ENST00000403559		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-5UTR	ENST00000367463	ENST00000408937		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-5UTR	ENST00000367463	ENST00000350908		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-5UTR	ENST00000367463	ENST00000393498		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-5UTR	ENST00000367463	ENST00000393489		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-intron	ENST00000367463	ENST00000393491		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-3UTR	ENST00000367463	ENST00000459666		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-3UTR	ENST00000367463	ENST00000378237		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-3UTR	ENST00000367463	ENST00000360232		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-3UTR	ENST00000367463	ENST00000390668		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
5CDS-intron	ENST00000367463	ENST00000462331		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000393500		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000393494		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000403559		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000408937		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000350908		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000393498		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-5UTR	ENST00000466695	ENST00000393489		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-intron	ENST00000466695	ENST00000393491		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-3UTR	ENST00000466695	ENST00000459666		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-3UTR	ENST00000466695	ENST00000378237		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-3UTR	ENST00000466695	ENST00000360232		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-3UTR	ENST00000466695	ENST00000390668		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
intron-intron	ENST00000466695	ENST00000462331		TCGA	LD	SARC	TCGA-DX-A23Z-01A	UST	chr6	149068813	+	FOXP2	chr7	114174672	+
Frame-shit	ENST00000548411	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000548411	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000548411	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000548411	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000548411	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000548411	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000548411	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000548411	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000548411	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000281474	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000281474	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000281474	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
Frame-shit	ENST00000281474	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000281474	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000281474	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000281474	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000281474	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-intron	ENST00000281474	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551848	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551848	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551848	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551848	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551848	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551848	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551848	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551848	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551848	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550207	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550207	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550207	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000550207	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000550207	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000550207	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000550207	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000550207	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000550207	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551086	ENST00000552285		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551086	ENST00000315970		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551086	ENST00000439210		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-3CDS	ENST00000551086	ENST00000389146		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551086	ENST00000413095		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551086	ENST00000551035		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551086	ENST00000435406		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551086	ENST00000257966		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
intron-intron	ENST00000551086	ENST00000389142		TCGA	LD	SARC	TCGA-DX-A240-01A	BICD1	chr12	32487601	+	OS9	chr12	58109543	+
5CDS-5UTR	ENST00000367843	ENST00000368003		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-intron	ENST00000367843	ENST00000473766		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000432587	ENST00000368003		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-intron	ENST00000432587	ENST00000473766		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000312263	ENST00000368003		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-intron	ENST00000312263	ENST00000473766		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000367840	ENST00000368003		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-intron	ENST00000367840	ENST00000473766		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
3UTR-5UTR	ENST00000470919	ENST00000368003		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
3UTR-intron	ENST00000470919	ENST00000473766		TCGA	LD	SARC	TCGA-DX-A240-01A	DCAF6	chr1	167921099	+	UFC1	chr1	161123716	+
5CDS-5UTR	ENST00000378993	ENST00000266719		TCGA	LD	SARC	TCGA-DX-A240-01A	IL1RAPL1	chrX	29686621	+	KERA	chr12	91451571	-
5CDS-5UTR	ENST00000302196	ENST00000266719		TCGA	LD	SARC	TCGA-DX-A240-01A	IL1RAPL1	chrX	29686621	+	KERA	chr12	91451571	-
Frame-shit	ENST00000461263	ENST00000248598		TCGA	LD	SARC	TCGA-DX-A240-01A	MDH2	chr7	75677544	+	FGL2	chr7	76826302	-
Frame-shit	ENST00000315758	ENST00000248598		TCGA	LD	SARC	TCGA-DX-A240-01A	MDH2	chr7	75677544	+	FGL2	chr7	76826302	-
5UTR-3CDS	ENST00000443006	ENST00000248598		TCGA	LD	SARC	TCGA-DX-A240-01A	MDH2	chr7	75677544	+	FGL2	chr7	76826302	-
3UTR-3CDS	ENST00000490105	ENST00000248598		TCGA	LD	SARC	TCGA-DX-A240-01A	MDH2	chr7	75677544	+	FGL2	chr7	76826302	-
Frame-shit	ENST00000432020	ENST00000248598		TCGA	LD	SARC	TCGA-DX-A240-01A	MDH2	chr7	75677544	+	FGL2	chr7	76826302	-
Frame-shit	ENST00000552285	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5CDS-intron	ENST00000552285	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
Frame-shit	ENST00000315970	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5CDS-intron	ENST00000315970	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
Frame-shit	ENST00000439210	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5CDS-intron	ENST00000439210	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
Frame-shit	ENST00000389146	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5CDS-intron	ENST00000389146	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
intron-3CDS	ENST00000413095	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
intron-intron	ENST00000413095	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
intron-3CDS	ENST00000551035	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
intron-intron	ENST00000551035	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
intron-3CDS	ENST00000435406	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
intron-intron	ENST00000435406	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
Frame-shit	ENST00000257966	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5CDS-intron	ENST00000257966	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
Frame-shit	ENST00000389142	ENST00000368046		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5CDS-intron	ENST00000389142	ENST00000368045		TCGA	LD	SARC	TCGA-DX-A240-01A	OS9	chr12	58090156	+	CD48	chr1	160651258	-
5UTR-5UTR	ENST00000484368	ENST00000266719		TCGA	LD	SARC	TCGA-DX-A240-01A	PIGC	chr1	172413128	-	KERA	chr12	91451571	-
5UTR-5UTR	ENST00000344529	ENST00000266719		TCGA	LD	SARC	TCGA-DX-A240-01A	PIGC	chr1	172413128	-	KERA	chr12	91451571	-
intron-5UTR	ENST00000367728	ENST00000266719		TCGA	LD	SARC	TCGA-DX-A240-01A	PIGC	chr1	172413128	-	KERA	chr12	91451571	-
5UTR-5UTR	ENST00000258324	ENST00000266719		TCGA	LD	SARC	TCGA-DX-A240-01A	PIGC	chr1	172413128	-	KERA	chr12	91451571	-
In-frame	ENST00000250559	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000250559	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000250559	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000393436	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000393436	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000393436	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000341355	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000341355	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000341355	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000537460	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000537460	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000537460	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
3UTR-3CDS	ENST00000463493	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
3UTR-3CDS	ENST00000463493	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
3UTR-5UTR	ENST00000463493	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000450214	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000450214	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000450214	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000543393	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000543393	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000543393	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000378985	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000378985	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000378985	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000540209	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000540209	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000540209	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000539091	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000539091	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000539091	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000542145	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
intron-3CDS	ENST00000542145	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
intron-5UTR	ENST00000542145	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000543697	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000543697	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000543697	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000541216	ENST00000314485		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
In-frame	ENST00000541216	ENST00000368086		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
5CDS-5UTR	ENST00000541216	ENST00000460351		TCGA	LD	SARC	TCGA-DX-A240-01A	RAP1B	chr12	69048032	+	IGSF8	chr1	160065036	-
Frame-shit	ENST00000380087	ENST00000316149		TCGA	LD	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16887199	-	NDUFAF4	chr6	97344723	-
5CDS-5UTR	ENST00000380087	ENST00000489477		TCGA	LD	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16887199	-	NDUFAF4	chr6	97344723	-
Frame-shit	ENST00000380084	ENST00000316149		TCGA	LD	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16887199	-	NDUFAF4	chr6	97344723	-
5CDS-5UTR	ENST00000380084	ENST00000489477		TCGA	LD	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16887199	-	NDUFAF4	chr6	97344723	-
Frame-shit	ENST00000404022	ENST00000316149		TCGA	LD	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16887199	-	NDUFAF4	chr6	97344723	-
5CDS-5UTR	ENST00000404022	ENST00000489477		TCGA	LD	SARC	TCGA-DX-A240-01A	RBBP7	chrX	16887199	-	NDUFAF4	chr6	97344723	-
Frame-shit	ENST00000230895	ENST00000394048		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
Frame-shit	ENST00000230895	ENST00000267113		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
Frame-shit	ENST00000230895	ENST00000541590		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
5CDS-3UTR	ENST00000230895	ENST00000550878		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
Frame-shit	ENST00000432074	ENST00000394048		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
Frame-shit	ENST00000432074	ENST00000267113		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
Frame-shit	ENST00000432074	ENST00000541590		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
5CDS-3UTR	ENST00000432074	ENST00000550878		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
5UTR-3CDS	ENST00000510546	ENST00000394048		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
5UTR-3CDS	ENST00000510546	ENST00000267113		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
5UTR-3CDS	ENST00000510546	ENST00000541590		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
5UTR-3UTR	ENST00000510546	ENST00000550878		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	DAP	chr5	10748287	-	ESYT1	chr12	56536362	+
Frame-shit	ENST00000299767	ENST00000266673		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	HSP90B1	chr12	104328065	+	TMEM19	chr12	72083371	+
Frame-shit	ENST00000299767	ENST00000549735		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	HSP90B1	chr12	104328065	+	TMEM19	chr12	72083371	+
In-frame	ENST00000553804	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000553804	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000553804	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000553804	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000257879	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000257879	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000257879	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000257879	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000347027	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000347027	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000347027	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000347027	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000452168	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000452168	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000452168	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000452168	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000394229	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000394229	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000394229	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000394229	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000257880	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000257880	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000257880	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000257880	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000394230	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000394230	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000394230	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000394230	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000555728	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000555728	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
In-frame	ENST00000555728	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
5CDS-intron	ENST00000555728	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	ITGA7	chr12	56089306	-	MYRFL	chr12	70349143	+
3UTR-intron	ENST00000549231	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
3UTR-intron	ENST00000549231	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
3UTR-intron	ENST00000549231	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
3UTR-5UTR	ENST00000549231	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000355673	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000355673	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000355673	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000355673	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000431731	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000431731	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-intron	ENST00000431731	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000431731	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MBD6	chr12	57918199	+	CPM	chr12	69351458	-
5UTR-3UTR	ENST00000193029	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000193029	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5UTR-3UTR	ENST00000193029	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000522874	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000522874	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000522874	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000361847	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000361847	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000361847	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000524214	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000524214	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
5CDS-3UTR	ENST00000524214	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000561150	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000561150	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000561150	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000517966	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000517966	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000517966	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000523231	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000523231	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000523231	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000524370	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000524370	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000524370	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000522867	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000522867	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000522867	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000520266	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000520266	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000520266	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000519058	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000519058	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000519058	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000522534	ENST00000547990		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000522534	ENST00000546809		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
intron-3UTR	ENST00000522534	ENST00000308796		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	MOK	chr14	102771299	-	MUCL1	chr12	55248900	+
Frame-shit	ENST00000240055	ENST00000229330		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	NFYB	chr12	104522202	-	HCFC2	chr12	104481764	+
5CDS-intron	ENST00000240055	ENST00000550335		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	NFYB	chr12	104522202	-	HCFC2	chr12	104481764	+
Frame-shit	ENST00000551727	ENST00000229330		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	NFYB	chr12	104522202	-	HCFC2	chr12	104481764	+
5CDS-intron	ENST00000551727	ENST00000550335		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	NFYB	chr12	104522202	-	HCFC2	chr12	104481764	+
Frame-shit	ENST00000425394	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000425394	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000425394	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000440411	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000440411	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000440411	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000257931	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000257931	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000257931	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000548043	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000548043	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
In-frame	ENST00000548043	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000549090	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000549090	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000549090	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	PAN2	chr12	56718078	-	LYZ	chr12	69743888	+
5CDS-intron	ENST00000261263	ENST00000547405		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000452455		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000360610		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000441232		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000392934		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000547509		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000361685		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000261263	ENST00000550501		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000261263	ENST00000549145		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000261263	ENST00000553190		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-3UTR	ENST00000261263	ENST00000536007		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000541119		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000545503		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-intron	ENST00000261263	ENST00000361466		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000261263	ENST00000551300		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
5CDS-5UTR	ENST00000261263	ENST00000550270		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAB21	chr12	72149068	+	MYBPC1	chr12	102008274	+
intron-intron	ENST00000250559	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000250559	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000393436	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000393436	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000341355	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000341355	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000537460	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000537460	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000463493	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000463493	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000450214	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000450214	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000543393	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000543393	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000378985	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000378985	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000540209	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000540209	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000539091	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
5UTR-intron	ENST00000539091	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000542145	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000542145	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000543697	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000543697	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000541216	ENST00000550067		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
intron-intron	ENST00000541216	ENST00000360820		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RAP1B	chr12	69004832	+	SCYL2	chr12	100711581	+
In-frame	ENST00000415757	ENST00000397130		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
In-frame	ENST00000415757	ENST00000323443		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
In-frame	ENST00000415757	ENST00000563454		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
In-frame	ENST00000389232	ENST00000397130		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
In-frame	ENST00000389232	ENST00000323443		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
In-frame	ENST00000389232	ENST00000563454		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
intron-3CDS	ENST00000559917	ENST00000397130		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
intron-3CDS	ENST00000559917	ENST00000323443		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
intron-3CDS	ENST00000559917	ENST00000563454		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	RYR3	chr15	33603297	+	LRRC57	chr15	42837460	-
In-frame	ENST00000444631	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SARNP	chr12	56188143	-	NT5DC3	chr12	104200707	-
5CDS-intron	ENST00000444631	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SARNP	chr12	56188143	-	NT5DC3	chr12	104200707	-
Frame-shit	ENST00000336133	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SARNP	chr12	56188143	-	NT5DC3	chr12	104200707	-
5CDS-intron	ENST00000336133	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SARNP	chr12	56188143	-	NT5DC3	chr12	104200707	-
Frame-shit	ENST00000552080	ENST00000392876		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SARNP	chr12	56188143	-	NT5DC3	chr12	104200707	-
5CDS-intron	ENST00000552080	ENST00000465502		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SARNP	chr12	56188143	-	NT5DC3	chr12	104200707	-
5CDS-intron	ENST00000398004	ENST00000418253		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SLC35E3	chr12	69145970	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000398004	ENST00000299308		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SLC35E3	chr12	69145970	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000398004	ENST00000535886		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SLC35E3	chr12	69145970	+	TMEM132B	chr12	126068397	+
3UTR-intron	ENST00000538043	ENST00000418253		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SLC35E3	chr12	69145970	+	TMEM132B	chr12	126068397	+
3UTR-intron	ENST00000538043	ENST00000299308		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SLC35E3	chr12	69145970	+	TMEM132B	chr12	126068397	+
3UTR-intron	ENST00000538043	ENST00000535886		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SLC35E3	chr12	69145970	+	TMEM132B	chr12	126068397	+
5CDS-intron	ENST00000299084	ENST00000529696		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRED1	chr15	38545418	+	TMCO5B	chr15	33538814	-
3UTR-intron	ENST00000561205	ENST00000529696		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRED1	chr15	38545418	+	TMCO5B	chr15	33538814	-
intron-intron	ENST00000338146	ENST00000540418		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56865873	+	MDM1	chr12	68720688	-
intron-intron	ENST00000338146	ENST00000303145		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56865873	+	MDM1	chr12	68720688	-
intron-intron	ENST00000338146	ENST00000411698		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56865873	+	MDM1	chr12	68720688	-
intron-3UTR	ENST00000338146	ENST00000393543		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56865873	+	MDM1	chr12	68720688	-
intron-3UTR	ENST00000338146	ENST00000430606		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56865873	+	MDM1	chr12	68720688	-
intron-5UTR	ENST00000338146	ENST00000545724		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	SPRYD4	chr12	56865873	+	MDM1	chr12	68720688	-
intron-5UTR	ENST00000556539	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000556539	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000556539	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000556539	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000556539	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000556539	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000314128	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000314128	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000314128	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000314128	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000314128	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000314128	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000557235	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000557235	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000557235	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000557235	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000557235	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000557235	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000418572	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000418572	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000418572	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000418572	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000418572	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000418572	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	STAT2	chr12	56753842	-	B4GALNT1	chr12	58025916	-
In-frame	ENST00000247843	ENST00000257897		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69759664	+	AGAP2	chr12	58127956	-
In-frame	ENST00000247843	ENST00000547588		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69759664	+	AGAP2	chr12	58127956	-
intron-3CDS	ENST00000548020	ENST00000257897		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69759664	+	AGAP2	chr12	58127956	-
intron-3CDS	ENST00000548020	ENST00000547588		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69759664	+	AGAP2	chr12	58127956	-
Frame-shit	ENST00000247843	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69764755	+	ARHGEF25	chr12	58008114	+
Frame-shit	ENST00000247843	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69764755	+	ARHGEF25	chr12	58008114	+
5CDS-intron	ENST00000247843	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69764755	+	ARHGEF25	chr12	58008114	+
Frame-shit	ENST00000548020	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69764755	+	ARHGEF25	chr12	58008114	+
Frame-shit	ENST00000548020	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69764755	+	ARHGEF25	chr12	58008114	+
5CDS-intron	ENST00000548020	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YEATS4	chr12	69764755	+	ARHGEF25	chr12	58008114	+
5CDS-3UTR	ENST00000262238	ENST00000524622		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YY1	chr14	100706260	+	TESPA1	chr12	55344174	-
5CDS-3UTR	ENST00000262238	ENST00000532804		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YY1	chr14	100706260	+	TESPA1	chr12	55344174	-
5CDS-3UTR	ENST00000262238	ENST00000449076		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YY1	chr14	100706260	+	TESPA1	chr12	55344174	-
5CDS-3UTR	ENST00000262238	ENST00000316577		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YY1	chr14	100706260	+	TESPA1	chr12	55344174	-
5CDS-3UTR	ENST00000262238	ENST00000531122		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YY1	chr14	100706260	+	TESPA1	chr12	55344174	-
5CDS-intron	ENST00000262238	ENST00000524959		TCGA	LD	SARC	TCGA-DX-A2IZ-01A	YY1	chr14	100706260	+	TESPA1	chr12	55344174	-
5UTR-intron	ENST00000340934	ENST00000343846		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000366878		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000484758		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000494793		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000478605		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000454695		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000344029		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
5UTR-intron	ENST00000340934	ENST00000366877		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000343846		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000366878		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000484758		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000494793		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000478605		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000454695		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000344029		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
3UTR-intron	ENST00000496267	ENST00000366877		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000343846		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000366878		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000484758		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000494793		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000478605		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000454695		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000344029		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000537020	ENST00000366877		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000343846		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000366878		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000484758		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000494793		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000478605		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000454695		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000344029		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
intron-intron	ENST00000539697	ENST00000366877		TCGA	LD	SARC	TCGA-DX-A2J0-01A	BROX	chr1	222886284	+	SUSD4	chr1	223532463	-
In-frame	ENST00000284881	ENST00000546159		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-intron	ENST00000284881	ENST00000486375		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000284881	ENST00000367521		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000284881	ENST00000361927		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000284881	ENST00000367520		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
In-frame	ENST00000400559	ENST00000546159		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-intron	ENST00000400559	ENST00000486375		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000400559	ENST00000367521		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000400559	ENST00000361927		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000400559	ENST00000367520		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
In-frame	ENST00000400558	ENST00000546159		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-intron	ENST00000400558	ENST00000486375		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000400558	ENST00000367521		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000400558	ENST00000361927		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5CDS-5UTR	ENST00000400558	ENST00000367520		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5UTR-3CDS	ENST00000493464	ENST00000546159		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5UTR-intron	ENST00000493464	ENST00000486375		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5UTR-5UTR	ENST00000493464	ENST00000367521		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5UTR-5UTR	ENST00000493464	ENST00000361927		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
5UTR-5UTR	ENST00000493464	ENST00000367520		TCGA	LD	SARC	TCGA-DX-A2J0-01A	C21orf91	chr21	19190509	-	COLGALT2	chr1	183914698	-
In-frame	ENST00000256151	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CCDC59	chr12	82748274	-	KCNMB4	chr12	70824265	+
5UTR-3CDS	ENST00000548126	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CCDC59	chr12	82748274	-	KCNMB4	chr12	70824265	+
5CDS-intron	ENST00000368034	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000368034	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000368033	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000368033	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000322302	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000322302	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000368032	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5CDS-intron	ENST00000368032	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5UTR-intron	ENST00000481677	ENST00000367922		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
5UTR-intron	ENST00000481677	ENST00000367921		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CD244	chr1	160808241	-	DDR2	chr1	162711369	+
In-frame	ENST00000435070	ENST00000228641		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CPSF6	chr12	69633486	+	MYF6	chr12	81101634	+
In-frame	ENST00000456847	ENST00000228641		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CPSF6	chr12	69633486	+	MYF6	chr12	81101634	+
In-frame	ENST00000266679	ENST00000228641		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CPSF6	chr12	69633486	+	MYF6	chr12	81101634	+
3UTR-3CDS	ENST00000550987	ENST00000228641		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CPSF6	chr12	69633486	+	MYF6	chr12	81101634	+
In-frame	ENST00000551516	ENST00000228641		TCGA	LD	SARC	TCGA-DX-A2J0-01A	CPSF6	chr12	69633486	+	MYF6	chr12	81101634	+
In-frame	ENST00000447706	ENST00000545121		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
In-frame	ENST00000447706	ENST00000357172		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
5CDS-3UTR	ENST00000447706	ENST00000467362		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
In-frame	ENST00000367348	ENST00000545121		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
In-frame	ENST00000367348	ENST00000357172		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
5CDS-3UTR	ENST00000367348	ENST00000467362		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
In-frame	ENST00000331314	ENST00000545121		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
In-frame	ENST00000331314	ENST00000357172		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
5CDS-3UTR	ENST00000331314	ENST00000467362		TCGA	LD	SARC	TCGA-DX-A2J0-01A	DDX59	chr1	200617567	-	CEPT1	chr1	111724809	+
5CDS-intron	ENST00000248306	ENST00000535228		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000248306	ENST00000328957		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000248306	ENST00000397325		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000248306	ENST00000541995		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000248306	ENST00000535208		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
3UTR-intron	ENST00000547357	ENST00000535228		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
3UTR-intron	ENST00000547357	ENST00000328957		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
3UTR-intron	ENST00000547357	ENST00000397325		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
3UTR-intron	ENST00000547357	ENST00000541995		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
3UTR-intron	ENST00000547357	ENST00000535208		TCGA	LD	SARC	TCGA-DX-A2J0-01A	METTL25	chr12	82796909	+	GALNT9	chr12	132863016	-
5CDS-intron	ENST00000367723	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000367723	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000367723	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000367723	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000367723	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000608151	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000608151	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000608151	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000608151	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000608151	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000610051	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000610051	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000610051	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000610051	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000610051	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000263688	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000263688	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000263688	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000263688	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
5CDS-intron	ENST00000263688	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	C12orf42	chr12	103696337	-
In-frame	ENST00000367723	ENST00000552864		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	LIN7A	chr12	81205462	-
In-frame	ENST00000608151	ENST00000552864		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	LIN7A	chr12	81205462	-
In-frame	ENST00000610051	ENST00000552864		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	LIN7A	chr12	81205462	-
In-frame	ENST00000263688	ENST00000552864		TCGA	LD	SARC	TCGA-DX-A2J0-01A	SUCO	chr1	172502637	+	LIN7A	chr12	81205462	-
Frame-shit	ENST00000539652	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000539652	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000539652	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000539652	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000539652	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000539652	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000556010	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000556010	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000556010	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000556010	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000556010	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000556010	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000358230	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000358230	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000358230	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000358230	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000358230	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000358230	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
intron-3CDS	ENST00000544599	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
intron-3CDS	ENST00000544599	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
intron-3CDS	ENST00000544599	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
intron-intron	ENST00000544599	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
intron-intron	ENST00000544599	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
intron-intron	ENST00000544599	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000286424	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000286424	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000286424	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000286424	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000286424	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000286424	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000398033	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000398033	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000398033	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000398033	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000398033	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000398033	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000542724	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000542724	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
Frame-shit	ENST00000542724	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000542724	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000542724	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-intron	ENST00000542724	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5UTR-3CDS	ENST00000535812	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5UTR-3CDS	ENST00000535812	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5UTR-3CDS	ENST00000535812	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5UTR-intron	ENST00000535812	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5UTR-intron	ENST00000535812	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5UTR-intron	ENST00000535812	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TMBIM4	chr12	66563635	-	NAV3	chr12	78520947	+
5CDS-5UTR	ENST00000543727	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000543727	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000543727	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-5UTR	ENST00000550559	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000550559	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000550559	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-5UTR	ENST00000548851	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000548851	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000548851	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-5UTR	ENST00000454289	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000454289	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000454289	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-5UTR	ENST00000540550	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000540550	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000540550	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-5UTR	ENST00000323833	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000323833	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5CDS-intron	ENST00000323833	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5UTR-5UTR	ENST00000350762	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5UTR-intron	ENST00000350762	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
5UTR-intron	ENST00000350762	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
3UTR-5UTR	ENST00000497617	ENST00000367854		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
3UTR-intron	ENST00000497617	ENST00000537350		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
3UTR-intron	ENST00000497617	ENST00000472038		TCGA	LD	SARC	TCGA-DX-A2J0-01A	TSFM	chr12	58177066	+	RCSD1	chr1	167599480	+
Frame-shit	ENST00000368911	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000368911	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000368911	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000323817	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
Frame-shit	ENST00000323817	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
In-frame	ENST00000323817	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000413605	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000413605	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000413605	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000497709	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000497709	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
intron-3CDS	ENST00000497709	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A2J1-01A	CDK19	chr6	110988637	-	LYZ	chr12	69743888	+
5CDS-intron	ENST00000403681	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000403681	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000403681	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000403681	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000403681	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000403681	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000403681	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000403681	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000403681	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000403681	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000541363	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000541363	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000541363	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000541363	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000541363	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000541363	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000541363	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000541363	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000541363	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000541363	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000393577	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000393577	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000393577	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000393577	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000393577	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000393577	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000393577	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000393577	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000393577	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-5UTR	ENST00000393577	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000393578	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000393578	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000393578	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000393578	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000393578	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000393578	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000393578	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000393578	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000393578	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000393578	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000425208	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000425208	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000425208	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000425208	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000425208	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000425208	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000425208	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000425208	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000425208	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000425208	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000536545	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000536545	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000536545	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000536545	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000536545	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000536545	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000536545	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000536545	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000536545	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000536545	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000354636	ENST00000548898		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000354636	ENST00000552067		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000354636	ENST00000420846		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000354636	ENST00000548160		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000354636	ENST00000546939		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000354636	ENST00000552692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000354636	ENST00000549117		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000354636	ENST00000257857		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-intron	ENST00000354636	ENST00000552754		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
intron-5UTR	ENST00000354636	ENST00000550776		TCGA	LD	SARC	TCGA-DX-A2J1-01A	HMGA2	chr12	66345195	+	CD63	chr12	56121123	-
5CDS-intron	ENST00000462284	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000462284	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000462284	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000462284	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000462284	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000462284	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000356290	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000356290	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000356290	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000356290	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000356290	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000356290	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000540827	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000540827	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000540827	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000540827	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000540827	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000540827	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258149	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258149	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258149	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258149	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258149	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258149	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000428863	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000428863	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000428863	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000428863	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000428863	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000428863	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393412	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393412	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393412	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393412	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393412	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393412	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258148	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258148	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258148	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258148	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258148	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000258148	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000544561	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000544561	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000544561	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000544561	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000544561	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000544561	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000393410	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000393410	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000393410	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000393410	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000393410	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000393410	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393413	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393413	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393413	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393413	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393413	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000393413	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000517852	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000517852	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000517852	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000517852	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000517852	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000517852	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000545204	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000545204	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000545204	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000545204	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000545204	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000545204	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000350057	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000350057	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000350057	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000350057	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000350057	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000350057	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000360430	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000360430	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000360430	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000360430	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000360430	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000360430	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000299252	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000299252	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000299252	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000299252	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000299252	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
5CDS-intron	ENST00000299252	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000348801	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000348801	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000348801	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000348801	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000348801	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000348801	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000478070	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000478070	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000478070	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000478070	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000478070	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000478070	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000544125	ENST00000536525		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000544125	ENST00000397909		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000544125	ENST00000228327		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000544125	ENST00000266692		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000544125	ENST00000552300		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-intron	ENST00000544125	ENST00000541270		TCGA	LD	SARC	TCGA-DX-A2J1-01A	MDM2	chr12	69207408	+	NAV3	chr12	77965639	+
intron-3CDS	ENST00000360284	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000360284	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000360284	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000545748	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000545748	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000545748	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000550082	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000550082	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000550082	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
3UTR-3CDS	ENST00000547206	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
3UTR-3CDS	ENST00000547206	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
3UTR-intron	ENST00000547206	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000243050	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000243050	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000243050	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000394825	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000394825	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000394825	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000394824	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000394824	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000394824	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000548232	ENST00000444631		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-3CDS	ENST00000548232	ENST00000336133		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
intron-intron	ENST00000548232	ENST00000552080		TCGA	LD	SARC	TCGA-DX-A2J1-01A	NR4A1	chr12	52437695	+	SARNP	chr12	56151337	-
5UTR-intron	ENST00000243045	ENST00000360284		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000545748		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000550082		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000547206		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000243050		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000394825		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000394824		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000243045	ENST00000548232		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000360284		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000545748		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000550082		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000547206		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000243050		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000394825		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000394824		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000552672	ENST00000548232		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000360284		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000545748		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000550082		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000547206		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000243050		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000394825		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000394824		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
5UTR-intron	ENST00000550836	ENST00000548232		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000360284		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000545748		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000550082		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000547206		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000243050		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000394825		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000394824		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
intron-intron	ENST00000548974	ENST00000548232		TCGA	LD	SARC	TCGA-DX-A2J1-01A	ORMDL2	chr12	56211896	+	NR4A1	chr12	52437478	+
In-frame	ENST00000441448	ENST00000368851		TCGA	LD	SARC	TCGA-DX-A2J1-01A	RPF2	chr6	111329340	+	SLC16A10	chr6	111493898	+
5CDS-intron	ENST00000441448	ENST00000368850		TCGA	LD	SARC	TCGA-DX-A2J1-01A	RPF2	chr6	111329340	+	SLC16A10	chr6	111493898	+
5CDS-intron	ENST00000441448	ENST00000465319		TCGA	LD	SARC	TCGA-DX-A2J1-01A	RPF2	chr6	111329340	+	SLC16A10	chr6	111493898	+
5UTR-intron	ENST00000553127	ENST00000550241		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000553127	ENST00000602871		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000553127	ENST00000394349		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000553127	ENST00000549164		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000553127	ENST00000338662		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000321898	ENST00000550241		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000321898	ENST00000602871		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000321898	ENST00000394349		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000321898	ENST00000549164		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000321898	ENST00000338662		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000552918	ENST00000550241		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000552918	ENST00000602871		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000552918	ENST00000394349		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000552918	ENST00000549164		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000552918	ENST00000338662		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000547865	ENST00000550241		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000547865	ENST00000602871		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000547865	ENST00000394349		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000547865	ENST00000549164		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
5UTR-intron	ENST00000547865	ENST00000338662		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000552557	ENST00000550241		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000552557	ENST00000602871		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000552557	ENST00000394349		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000552557	ENST00000549164		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
intron-intron	ENST00000552557	ENST00000338662		TCGA	LD	SARC	TCGA-DX-A2J1-01A	SPATS2	chr12	49765073	+	ATP5G2	chr12	54059212	-
In-frame	ENST00000389658	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A2J4-01A	LAMA1	chr18	6980520	-	L3MBTL4	chr18	6138295	-
In-frame	ENST00000389658	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A2J4-01A	LAMA1	chr18	6980520	-	L3MBTL4	chr18	6138295	-
In-frame	ENST00000389658	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A2J4-01A	LAMA1	chr18	6980520	-	L3MBTL4	chr18	6138295	-
In-frame	ENST00000389658	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A2J4-01A	LAMA1	chr18	6980520	-	L3MBTL4	chr18	6138295	-
In-frame	ENST00000389658	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A2J4-01A	LAMA1	chr18	6980520	-	L3MBTL4	chr18	6138295	-
5CDS-intron	ENST00000389658	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A2J4-01A	LAMA1	chr18	6980520	-	L3MBTL4	chr18	6138295	-
5CDS-5UTR	ENST00000549396	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000549396	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000549396	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000549396	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000549396	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000550584	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000550584	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000550584	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000550584	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000550584	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000549325	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000549325	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000549325	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000549325	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000549325	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000545296	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000545296	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-intron	ENST00000545296	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000545296	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-3UTR	ENST00000545296	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000550359	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000550359	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-intron	ENST00000550359	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-5UTR	ENST00000550359	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5UTR-3UTR	ENST00000550359	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000407050	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000407050	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000407050	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000407050	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000407050	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000333447	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000333447	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000333447	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000333447	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000333447	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000548586	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000548586	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000548586	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000548586	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000548586	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000443686	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000443686	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000443686	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000443686	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000443686	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000552948	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000552948	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-intron	ENST00000552948	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-5UTR	ENST00000552948	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000552948	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-5UTR	ENST00000541570	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-5UTR	ENST00000541570	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-intron	ENST00000541570	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-5UTR	ENST00000541570	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-3UTR	ENST00000541570	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-5UTR	ENST00000541017	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-5UTR	ENST00000541017	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-intron	ENST00000541017	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-5UTR	ENST00000541017	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
intron-3UTR	ENST00000541017	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A2J4-01A	PPFIA2	chr12	81851544	-	SYT1	chr12	79441077	+
5CDS-3UTR	ENST00000532498	ENST00000435070		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
5CDS-intron	ENST00000532498	ENST00000456847		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
5CDS-intron	ENST00000532498	ENST00000266679		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
5CDS-intron	ENST00000532498	ENST00000550987		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
5CDS-intron	ENST00000532498	ENST00000551516		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
intron-3UTR	ENST00000547403	ENST00000435070		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
intron-intron	ENST00000547403	ENST00000456847		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
intron-intron	ENST00000547403	ENST00000266679		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
intron-intron	ENST00000547403	ENST00000550987		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
intron-intron	ENST00000547403	ENST00000551516		TCGA	LD	SARC	TCGA-DX-A2J4-01A	TSPAN19	chr12	85408099	-	CPSF6	chr12	69667644	+
intron-3CDS	ENST00000597563	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000597563	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000597563	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000597563	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000426973	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000426973	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000426973	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
intron-3CDS	ENST00000426973	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000356109	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000356109	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000356109	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000356109	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000355684	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000355684	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000355684	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
Frame-shit	ENST00000355684	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF44	chr19	12405507	-	MYRFL	chr12	70346579	+
5UTR-5UTR	ENST00000293648	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000293648	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000293648	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000293648	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000448622	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000448622	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000448622	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000448622	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000453372	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000453372	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000453372	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000453372	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000541032	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000541032	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000541032	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000541032	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000590155	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000590155	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000590155	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000590155	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000453792	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000453792	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000453792	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000453792	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000537617	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000537617	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000537617	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000537617	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-5UTR	ENST00000587392	ENST00000548804		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000587392	ENST00000337737		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000587392	ENST00000548198		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
5UTR-intron	ENST00000587392	ENST00000551632		TCGA	LD	SARC	TCGA-DX-A2J4-01A	ZNF562	chr19	9785691	-	DTX3	chr12	57998578	+
intron-3CDS	ENST00000252699	ENST00000430223		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000252699	ENST00000341166		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-5UTR	ENST00000252699	ENST00000520545		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000424234	ENST00000430223		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000424234	ENST00000341166		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-5UTR	ENST00000424234	ENST00000520545		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000390009	ENST00000430223		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000390009	ENST00000341166		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-5UTR	ENST00000390009	ENST00000520545		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000497637	ENST00000430223		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-3CDS	ENST00000497637	ENST00000341166		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
intron-5UTR	ENST00000497637	ENST00000520545		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ACTN4	chr19	39215256	+	NIPAL2	chr8	99205322	-
In-frame	ENST00000441917	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
In-frame	ENST00000441917	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
In-frame	ENST00000441917	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5CDS-5UTR	ENST00000441917	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000541887	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000541887	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000541887	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5CDS-5UTR	ENST00000541887	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000261819	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000261819	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000261819	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5CDS-5UTR	ENST00000261819	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000535482	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000535482	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000535482	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5CDS-5UTR	ENST00000535482	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5UTR-3CDS	ENST00000544314	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5UTR-3CDS	ENST00000544314	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5UTR-3CDS	ENST00000544314	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5UTR-5UTR	ENST00000544314	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000344395	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000344395	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000344395	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
5CDS-5UTR	ENST00000344395	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
intron-3CDS	ENST00000536366	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
intron-3CDS	ENST00000536366	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
intron-3CDS	ENST00000536366	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
intron-5UTR	ENST00000536366	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ANAPC5	chr12	121756080	-	LTA4H	chr12	96402926	-
Frame-shit	ENST00000373869	ENST00000348547		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373869	ENST00000357394		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373869	ENST00000279052		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373869	ENST00000447986		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
5CDS-3UTR	ENST00000373869	ENST00000482338		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000288065	ENST00000348547		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000288065	ENST00000357394		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000288065	ENST00000279052		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000288065	ENST00000447986		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
5CDS-3UTR	ENST00000288065	ENST00000482338		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373866	ENST00000348547		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373866	ENST00000357394		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373866	ENST00000279052		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
Frame-shit	ENST00000373866	ENST00000447986		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
5CDS-3UTR	ENST00000373866	ENST00000482338		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ARMC12	chr6	35706295	+	ERGIC3	chr20	34142815	+
intron-3UTR	ENST00000324189	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000324189	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000324189	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-intron	ENST00000324189	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000546192	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000546192	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000546192	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-intron	ENST00000546192	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000545141	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000545141	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-3UTR	ENST00000545141	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
3UTR-intron	ENST00000545141	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000535274	ENST00000553221		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000535274	ENST00000257910		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-3UTR	ENST00000535274	ENST00000547992		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
intron-intron	ENST00000535274	ENST00000547472		TCGA	LD	SARC	TCGA-DX-A3LS-01A	B3GNT4	chr12	122692359	+	TSPAN31	chr12	58139528	+
Frame-shit	ENST00000374467	ENST00000374408		TCGA	LD	SARC	TCGA-DX-A3LS-01A	BAK1	chr6	33543075	-	FAM83C	chr20	33876761	-
Frame-shit	ENST00000442998	ENST00000374408		TCGA	LD	SARC	TCGA-DX-A3LS-01A	BAK1	chr6	33543075	-	FAM83C	chr20	33876761	-
Frame-shit	ENST00000360661	ENST00000374408		TCGA	LD	SARC	TCGA-DX-A3LS-01A	BAK1	chr6	33543075	-	FAM83C	chr20	33876761	-
intron-3CDS	ENST00000392474	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000538733	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000337174	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000347034	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000324774	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000545538	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
5UTR-3CDS	ENST00000412367	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
5UTR-3CDS	ENST00000404169	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
5UTR-3CDS	ENST00000402834	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000446440	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
intron-3CDS	ENST00000392473	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
5UTR-3CDS	ENST00000535524	ENST00000329406		TCGA	LD	SARC	TCGA-DX-A3LS-01A	CAMKK2	chr12	121734441	-	PMCH	chr12	102590949	-
5CDS-3UTR	ENST00000267101	ENST00000478241		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ERBB3	chr12	56482652	+	TMEM198B	chr12	56228635	+
intron-3UTR	ENST00000450146	ENST00000478241		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ERBB3	chr12	56482652	+	TMEM198B	chr12	56228635	+
5CDS-3UTR	ENST00000415288	ENST00000478241		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ERBB3	chr12	56482652	+	TMEM198B	chr12	56228635	+
intron-3UTR	ENST00000553131	ENST00000478241		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ERBB3	chr12	56482652	+	TMEM198B	chr12	56228635	+
intron-3UTR	ENST00000411731	ENST00000478241		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ERBB3	chr12	56482652	+	TMEM198B	chr12	56228635	+
intron-3UTR	ENST00000549832	ENST00000478241		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ERBB3	chr12	56482652	+	TMEM198B	chr12	56228635	+
Frame-shit	ENST00000253861	ENST00000285930		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
5CDS-5UTR	ENST00000253861	ENST00000489022		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-3CDS	ENST00000539845	ENST00000285930		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-5UTR	ENST00000539845	ENST00000489022		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
Frame-shit	ENST00000393161	ENST00000285930		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
5CDS-5UTR	ENST00000393161	ENST00000489022		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-3CDS	ENST00000545148	ENST00000285930		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-5UTR	ENST00000545148	ENST00000489022		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-3CDS	ENST00000460346	ENST00000285930		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-5UTR	ENST00000460346	ENST00000489022		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-3CDS	ENST00000541309	ENST00000285930		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-5UTR	ENST00000541309	ENST00000489022		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132937943	+	AKR1B1	chr7	134136505	-
intron-3CDS	ENST00000253861	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000253861	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000253861	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-3CDS	ENST00000539845	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000539845	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000539845	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-3CDS	ENST00000393161	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000393161	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000393161	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-3CDS	ENST00000545148	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000545148	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000545148	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-3CDS	ENST00000460346	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000460346	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000460346	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-3CDS	ENST00000541309	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000541309	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-intron	ENST00000541309	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	EXOC4	chr7	132938087	+	ELK3	chr12	96641462	+
intron-3CDS	ENST00000299314	ENST00000258534		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000299314	ENST00000544152		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000549940	ENST00000258534		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000549940	ENST00000544152		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000392919	ENST00000258534		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000392919	ENST00000544152		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000549165	ENST00000258534		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
intron-3CDS	ENST00000549165	ENST00000544152		TCGA	LD	SARC	TCGA-DX-A3LS-01A	GNPTAB	chr12	102224404	-	DRAM1	chr12	102291641	+
3UTR-3CDS	ENST00000281938	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
3UTR-3CDS	ENST00000281938	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
3UTR-intron	ENST00000281938	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
3UTR-intron	ENST00000281938	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000542496	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000542496	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000542496	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000542496	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LS-01A	HSPB8	chr12	119631670	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000371712	ENST00000371763		TCGA	LD	SARC	TCGA-DX-A3LS-01A	INPP5E	chr9	139333060	-	GLT6D1	chr9	138523324	-
intron-3CDS	ENST00000249363	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3LS-01A	LRRC4	chr7	127668920	-	LTA4H	chr12	96412681	-
intron-3CDS	ENST00000249363	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3LS-01A	LRRC4	chr7	127668920	-	LTA4H	chr12	96412681	-
intron-3CDS	ENST00000249363	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3LS-01A	LRRC4	chr7	127668920	-	LTA4H	chr12	96412681	-
intron-intron	ENST00000249363	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3LS-01A	LRRC4	chr7	127668920	-	LTA4H	chr12	96412681	-
5CDS-5UTR	ENST00000319080	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000319080	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000319080	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000319080	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000319080	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000538698	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000538698	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000538698	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000538698	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000538698	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000377037	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000377037	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000377037	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000377037	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000377037	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000535996	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535996	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535996	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535996	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000535996	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MLXIP	chr12	122517172	+	TSPAN8	chr12	71676599	-
In-frame	ENST00000302349	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000302349	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000302349	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
In-frame	ENST00000541076	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000541076	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000541076	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
Frame-shit	ENST00000606320	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000606320	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000606320	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
In-frame	ENST00000392425	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000392425	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
5CDS-intron	ENST00000392425	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
intron-3CDS	ENST00000539639	ENST00000228741		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
intron-intron	ENST00000539639	ENST00000552142		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
intron-intron	ENST00000539639	ENST00000549529		TCGA	LD	SARC	TCGA-DX-A3LS-01A	MPHOSPH9	chr12	123694603	-	ELK3	chr12	96640718	+
In-frame	ENST00000374012	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
Frame-shit	ENST00000374012	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
In-frame	ENST00000374012	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
5CDS-intron	ENST00000374012	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
3UTR-3CDS	ENST00000439301	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
3UTR-3CDS	ENST00000439301	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
3UTR-3CDS	ENST00000439301	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
3UTR-intron	ENST00000439301	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
intron-3CDS	ENST00000481202	ENST00000441008		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
intron-3CDS	ENST00000481202	ENST00000217333		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
intron-3CDS	ENST00000481202	ENST00000400441		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
intron-intron	ENST00000481202	ENST00000466091		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PHF20	chr20	34515801	+	MROH8	chr20	35800460	-
intron-3CDS	ENST00000320201	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000320201	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-intron	ENST00000320201	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000392428	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000392428	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-intron	ENST00000392428	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000280562	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000280562	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-intron	ENST00000280562	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000542749	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000542749	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-intron	ENST00000542749	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000546049	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000546049	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-intron	ENST00000546049	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000451868	ENST00000333972		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-3CDS	ENST00000451868	ENST00000286494		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
intron-intron	ENST00000451868	ENST00000477314		TCGA	LD	SARC	TCGA-DX-A3LS-01A	PITPNM2	chr12	123634323	-	ARHGEF25	chr12	58006713	+
5UTR-5UTR	ENST00000382496	ENST00000373874		TCGA	LD	SARC	TCGA-DX-A3LS-01A	SEMA5A	chr5	9545696	-	TGIF2	chr20	35207144	+
5UTR-5UTR	ENST00000382496	ENST00000373872		TCGA	LD	SARC	TCGA-DX-A3LS-01A	SEMA5A	chr5	9545696	-	TGIF2	chr20	35207144	+
In-frame	ENST00000543727	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000543727	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000543727	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000543727	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000550559	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000550559	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000550559	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000550559	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000548851	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000548851	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000548851	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000548851	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000454289	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000454289	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000454289	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000454289	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000540550	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000540550	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000540550	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
intron-intron	ENST00000540550	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000323833	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000323833	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000323833	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000323833	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000350762	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000350762	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
In-frame	ENST00000350762	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000350762	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
3UTR-3CDS	ENST00000497617	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
3UTR-3CDS	ENST00000497617	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
3UTR-3CDS	ENST00000497617	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
3UTR-intron	ENST00000497617	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LS-01A	TSFM	chr12	58186856	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000328070	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
5UTR-3CDS	ENST00000328070	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000328070	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
5UTR-intron	ENST00000328070	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
3UTR-3CDS	ENST00000594944	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
3UTR-3CDS	ENST00000594944	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
3UTR-intron	ENST00000594944	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
3UTR-intron	ENST00000594944	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LS-01A	ZNF71	chr19	57112959	+	MYRFL	chr12	70249060	+
Frame-shit	ENST00000524419	ENST00000329957		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
5CDS-5UTR	ENST00000524419	ENST00000526462		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
Frame-shit	ENST00000528989	ENST00000329957		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
5CDS-5UTR	ENST00000528989	ENST00000526462		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
Frame-shit	ENST00000315571	ENST00000329957		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
5CDS-5UTR	ENST00000315571	ENST00000526462		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
intron-3CDS	ENST00000529759	ENST00000329957		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
intron-5UTR	ENST00000529759	ENST00000526462		TCGA	LD	SARC	TCGA-DX-A3LT-01A	LDLRAD3	chr11	35965694	+	MOB2	chr11	1502115	-
Frame-shit	ENST00000329957	ENST00000321505		TCGA	LD	SARC	TCGA-DX-A3LT-01A	MOB2	chr11	1501623	-	KIAA1549L	chr11	33667232	+
Frame-shit	ENST00000329957	ENST00000389726		TCGA	LD	SARC	TCGA-DX-A3LT-01A	MOB2	chr11	1501623	-	KIAA1549L	chr11	33667232	+
5CDS-intron	ENST00000329957	ENST00000265654		TCGA	LD	SARC	TCGA-DX-A3LT-01A	MOB2	chr11	1501623	-	KIAA1549L	chr11	33667232	+
5UTR-3CDS	ENST00000526462	ENST00000321505		TCGA	LD	SARC	TCGA-DX-A3LT-01A	MOB2	chr11	1501623	-	KIAA1549L	chr11	33667232	+
5UTR-3CDS	ENST00000526462	ENST00000389726		TCGA	LD	SARC	TCGA-DX-A3LT-01A	MOB2	chr11	1501623	-	KIAA1549L	chr11	33667232	+
5UTR-intron	ENST00000526462	ENST00000265654		TCGA	LD	SARC	TCGA-DX-A3LT-01A	MOB2	chr11	1501623	-	KIAA1549L	chr11	33667232	+
In-frame	ENST00000257570	ENST00000258742		TCGA	LD	SARC	TCGA-DX-A3LT-01A	OASL	chr12	121476577	-	NUPL2	chr7	23239077	+
5CDS-intron	ENST00000257570	ENST00000410002		TCGA	LD	SARC	TCGA-DX-A3LT-01A	OASL	chr12	121476577	-	NUPL2	chr7	23239077	+
5CDS-intron	ENST00000257570	ENST00000487595		TCGA	LD	SARC	TCGA-DX-A3LT-01A	OASL	chr12	121476577	-	NUPL2	chr7	23239077	+
In-frame	ENST00000339275	ENST00000258742		TCGA	LD	SARC	TCGA-DX-A3LT-01A	OASL	chr12	121476577	-	NUPL2	chr7	23239077	+
5CDS-intron	ENST00000339275	ENST00000410002		TCGA	LD	SARC	TCGA-DX-A3LT-01A	OASL	chr12	121476577	-	NUPL2	chr7	23239077	+
5CDS-intron	ENST00000339275	ENST00000487595		TCGA	LD	SARC	TCGA-DX-A3LT-01A	OASL	chr12	121476577	-	NUPL2	chr7	23239077	+
5CDS-3UTR	ENST00000299001	ENST00000281030		TCGA	LD	SARC	TCGA-DX-A3LT-01A	PIWIL4	chr11	94310658	+	THRSP	chr11	77778705	+
intron-3UTR	ENST00000537419	ENST00000281030		TCGA	LD	SARC	TCGA-DX-A3LT-01A	PIWIL4	chr11	94310658	+	THRSP	chr11	77778705	+
intron-3CDS	ENST00000309283	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
intron-3CDS	ENST00000309283	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
intron-intron	ENST00000309283	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
intron-intron	ENST00000309283	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000266682	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000266682	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000266682	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000266682	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000552192	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000552192	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000552192	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000552192	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000551388	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000551388	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000551388	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000551388	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000450363	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-3CDS	ENST00000450363	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000450363	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5UTR-intron	ENST00000450363	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A3LT-01A	SLC6A15	chr12	85306302	-	MYRFL	chr12	70297424	+
5CDS-5UTR	ENST00000446113	ENST00000549405		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000446113	ENST00000393205		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000446113	ENST00000332156		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000446113	ENST00000604798		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000446113	ENST00000552808		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000446113	ENST00000548651		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000446113	ENST00000552435		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-intron	ENST00000446113	ENST00000602941		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000549405		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000393205		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000332156		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000604798		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000552808		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000548651		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-5UTR	ENST00000399351	ENST00000552435		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
5CDS-intron	ENST00000399351	ENST00000602941		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000549405		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000393205		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000332156		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000604798		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000552808		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000548651		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-5UTR	ENST00000532812	ENST00000552435		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
3UTR-intron	ENST00000532812	ENST00000602941		TCGA	LD	SARC	TCGA-DX-A3LT-01A	ZDHHC13	chr11	19174231	+	MGAT4C	chr12	86383330	-
intron-5UTR	ENST00000508032	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-intron	ENST00000508032	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-5UTR	ENST00000508032	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-5UTR	ENST00000508032	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-intron	ENST00000508032	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-intron	ENST00000508032	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-intron	ENST00000508032	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-intron	ENST00000508032	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000336812	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000336812	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000336812	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000336812	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000336812	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000336812	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000336812	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000336812	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A3LU-01A	DHX15	chr4	24543496	-	CCND3	chr6	41908323	-
intron-3CDS	ENST00000394253	ENST00000274867		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000394253	ENST00000398904		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000394253	ENST00000538976		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000394253	ENST00000405961		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000394253	ENST00000494405		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
In-frame	ENST00000373010	ENST00000274867		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
In-frame	ENST00000373010	ENST00000398904		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
In-frame	ENST00000373010	ENST00000538976		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
5CDS-intron	ENST00000373010	ENST00000405961		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
5CDS-intron	ENST00000373010	ENST00000494405		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000373006	ENST00000274867		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000373006	ENST00000398904		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000373006	ENST00000538976		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000373006	ENST00000405961		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000373006	ENST00000494405		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000297229	ENST00000274867		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000297229	ENST00000398904		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000297229	ENST00000538976		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000297229	ENST00000405961		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000297229	ENST00000494405		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000373009	ENST00000274867		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000373009	ENST00000398904		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-3CDS	ENST00000373009	ENST00000538976		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000373009	ENST00000405961		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
intron-intron	ENST00000373009	ENST00000494405		TCGA	LD	SARC	TCGA-DX-A3LU-01A	USP49	chr6	41766613	-	DAAM2	chr6	39851738	+
5CDS-5UTR	ENST00000359019	ENST00000373083		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000359019	ENST00000373089		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000359019	ENST00000373086		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000334822	ENST00000373083		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000334822	ENST00000373089		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000334822	ENST00000373086		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000426126	ENST00000373083		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-5UTR	ENST00000426126	ENST00000373089		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
5CDS-intron	ENST00000426126	ENST00000373086		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
intron-5UTR	ENST00000550789	ENST00000373083		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
intron-5UTR	ENST00000550789	ENST00000373089		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
intron-intron	ENST00000550789	ENST00000373086		TCGA	LD	SARC	TCGA-DX-A3LU-01A	ZDHHC17	chr12	77158109	+	NCR2	chr6	41303569	+
Frame-shit	ENST00000257899	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000257899	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000257899	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000257899	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000548925	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000548925	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000548925	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000548925	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000549147	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000549147	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
Frame-shit	ENST00000549147	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000549147	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000547076	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000547076	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000547076	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-intron	ENST00000547076	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000551926	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000551926	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-3CDS	ENST00000551926	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5UTR-intron	ENST00000551926	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000548556	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000548556	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000548556	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
intron-intron	ENST00000548556	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A3LW-01A	BLOC1S1	chr12	56110789	+	CPM	chr12	69279669	-
5CDS-3UTR	ENST00000229195	ENST00000426898		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000229195	ENST00000425752		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000229195	ENST00000423947		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000229195	ENST00000435642		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000229195	ENST00000320560		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000229195	ENST00000441606		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000418359	ENST00000426898		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000418359	ENST00000425752		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000418359	ENST00000423947		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000418359	ENST00000435642		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000418359	ENST00000320560		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5CDS-3UTR	ENST00000418359	ENST00000441606		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000548230	ENST00000426898		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000548230	ENST00000425752		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000548230	ENST00000423947		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000548230	ENST00000435642		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000548230	ENST00000320560		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000548230	ENST00000441606		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000551483	ENST00000426898		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000551483	ENST00000425752		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000551483	ENST00000423947		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000551483	ENST00000435642		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000551483	ENST00000320560		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
intron-3UTR	ENST00000551483	ENST00000441606		TCGA	LD	SARC	TCGA-DX-A3LW-01A	CNOT2	chr12	70704797	+	ANO6	chr12	45761471	+
5UTR-5UTR	ENST00000489520	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3LW-01A	RPSAP52	chr12	66220623	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000489520	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3LW-01A	RPSAP52	chr12	66220623	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000489520	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3LW-01A	RPSAP52	chr12	66220623	-	TSPAN8	chr12	71551567	-
5UTR-intron	ENST00000489520	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3LW-01A	RPSAP52	chr12	66220623	-	TSPAN8	chr12	71551567	-
5UTR-5UTR	ENST00000489520	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3LW-01A	RPSAP52	chr12	66220623	-	TSPAN8	chr12	71551567	-
Frame-shit	ENST00000399878	ENST00000308197		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000399878	ENST00000433805		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000399878	ENST00000546544		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000264868	ENST00000308197		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000264868	ENST00000433805		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000264868	ENST00000546544		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000502949	ENST00000308197		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
Frame-shit	ENST00000502949	ENST00000433805		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
In-frame	ENST00000502949	ENST00000546544		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
intron-3CDS	ENST00000513364	ENST00000308197		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
intron-3CDS	ENST00000513364	ENST00000433805		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
intron-3CDS	ENST00000513364	ENST00000546544		TCGA	LD	SARC	TCGA-DX-A3LW-01A	SEL1L3	chr4	25803905	-	COQ10A	chr12	56661578	+
intron-3CDS	ENST00000353364	ENST00000229195		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000353364	ENST00000418359		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000353364	ENST00000548230		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000353364	ENST00000551483		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
In-frame	ENST00000280377	ENST00000229195		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
In-frame	ENST00000280377	ENST00000418359		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000280377	ENST00000548230		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
5CDS-intron	ENST00000280377	ENST00000551483		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000393654	ENST00000229195		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000393654	ENST00000418359		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000393654	ENST00000548230		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000393654	ENST00000551483		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000550632	ENST00000229195		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000550632	ENST00000418359		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000550632	ENST00000548230		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000550632	ENST00000551483		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000312635	ENST00000229195		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000312635	ENST00000418359		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000312635	ENST00000548230		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-intron	ENST00000312635	ENST00000551483		TCGA	LD	SARC	TCGA-DX-A3LW-01A	USP15	chr12	62743088	+	CNOT2	chr12	70747609	+
intron-3CDS	ENST00000393721	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000393721	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000393721	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000393721	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000370028	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000370028	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000370028	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000370028	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000350060	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000350060	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000350060	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000350060	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000370016	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000370016	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000370016	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000370016	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000537206	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000537206	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000537206	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000537206	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000467421	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-3CDS	ENST00000467421	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000467421	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
intron-intron	ENST00000467421	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	ARHGAP4	chrX	153200337	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000266970	ENST00000267101		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000266970	ENST00000450146		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000266970	ENST00000415288		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000266970	ENST00000553131		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000266970	ENST00000411731		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000266970	ENST00000549832		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
Frame-shit	ENST00000553376	ENST00000267101		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000553376	ENST00000450146		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000553376	ENST00000415288		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000553376	ENST00000553131		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000553376	ENST00000411731		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000553376	ENST00000549832		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
Frame-shit	ENST00000440311	ENST00000267101		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000440311	ENST00000450146		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000440311	ENST00000415288		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000440311	ENST00000553131		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000440311	ENST00000411731		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000440311	ENST00000549832		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
Frame-shit	ENST00000354056	ENST00000267101		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000354056	ENST00000450146		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000354056	ENST00000415288		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000354056	ENST00000553131		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000354056	ENST00000411731		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-intron	ENST00000354056	ENST00000549832		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
intron-3CDS	ENST00000556656	ENST00000267101		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
intron-intron	ENST00000556656	ENST00000450146		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
intron-intron	ENST00000556656	ENST00000415288		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
intron-intron	ENST00000556656	ENST00000553131		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
intron-intron	ENST00000556656	ENST00000411731		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
intron-intron	ENST00000556656	ENST00000549832		TCGA	LD	SARC	TCGA-DX-A3LY-01B	CDK2	chr12	56360908	+	ERBB3	chr12	56480315	+
5CDS-3UTR	ENST00000452510	ENST00000497517		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000539820		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000382269		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000349624		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000345913		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000346956		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000337415		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000329066		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000382201		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000452510	ENST00000382198		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-3UTR	ENST00000354283	ENST00000497517		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000539820		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000382269		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000349624		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000345913		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000346956		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000337415		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000329066		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000382201		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
5CDS-intron	ENST00000354283	ENST00000382198		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-3UTR	ENST00000509178	ENST00000497517		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000539820		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000382269		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000349624		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000345913		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000346956		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000337415		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000329066		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000382201		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
intron-intron	ENST00000509178	ENST00000382198		TCGA	LD	SARC	TCGA-DX-A3LY-01B	DDX46	chr5	134113415	+	TPO	chr2	1546193	+
In-frame	ENST00000464845	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000464845	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000464845	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000464845	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000370015	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000370015	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000370015	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000370015	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000393712	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000393712	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000393712	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000393712	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000370009	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
In-frame	ENST00000370009	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000370009	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000370009	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5UTR-3CDS	ENST00000393710	ENST00000542120		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5UTR-3CDS	ENST00000393710	ENST00000229088		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5UTR-intron	ENST00000393710	ENST00000456757		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
5UTR-intron	ENST00000393710	ENST00000539867		TCGA	LD	SARC	TCGA-DX-A3LY-01B	NAA10	chrX	153200337	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000367468	ENST00000367439		TCGA	LD	SARC	TCGA-DX-A3LY-01B	PTGS2	chr1	186649371	-	GLRX2	chr1	193070334	-
Frame-shit	ENST00000367468	ENST00000367440		TCGA	LD	SARC	TCGA-DX-A3LY-01B	PTGS2	chr1	186649371	-	GLRX2	chr1	193070334	-
5CDS-5UTR	ENST00000367468	ENST00000472197		TCGA	LD	SARC	TCGA-DX-A3LY-01B	PTGS2	chr1	186649371	-	GLRX2	chr1	193070334	-
5UTR-3CDS	ENST00000490885	ENST00000367439		TCGA	LD	SARC	TCGA-DX-A3LY-01B	PTGS2	chr1	186649371	-	GLRX2	chr1	193070334	-
5UTR-3CDS	ENST00000490885	ENST00000367440		TCGA	LD	SARC	TCGA-DX-A3LY-01B	PTGS2	chr1	186649371	-	GLRX2	chr1	193070334	-
5UTR-5UTR	ENST00000490885	ENST00000472197		TCGA	LD	SARC	TCGA-DX-A3LY-01B	PTGS2	chr1	186649371	-	GLRX2	chr1	193070334	-
intron-3CDS	ENST00000413953	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000413953	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000347140	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000347140	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000358907	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000358907	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000402412	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
5UTR-3CDS	ENST00000402412	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000441731	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000441731	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000403821	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000403821	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000546843	ENST00000379141		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
intron-3CDS	ENST00000546843	ENST00000320743		TCGA	LD	SARC	TCGA-DX-A3LY-01B	R3HDM2	chr12	57789532	-	LRIG3	chr12	59284578	-
Frame-shit	ENST00000264818	ENST00000269878		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
Frame-shit	ENST00000264818	ENST00000379859		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000264818	ENST00000541493		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000524462	ENST00000269878		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000524462	ENST00000379859		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
intron-5UTR	ENST00000524462	ENST00000541493		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
In-frame	ENST00000525621	ENST00000269878		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
In-frame	ENST00000525621	ENST00000379859		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000525621	ENST00000541493		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
In-frame	ENST00000529370	ENST00000269878		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
In-frame	ENST00000529370	ENST00000379859		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
5CDS-5UTR	ENST00000529370	ENST00000541493		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000529422	ENST00000269878		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
intron-3CDS	ENST00000529422	ENST00000379859		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
intron-5UTR	ENST00000529422	ENST00000541493		TCGA	LD	SARC	TCGA-DX-A3LY-01B	TYK2	chr19	10488890	-	CIB3	chr19	16275724	-
Frame-shit	ENST00000340001	ENST00000535342		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000340001	ENST00000392769		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000340001	ENST00000541355		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000340001	ENST00000537949		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000340001	ENST00000317442		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000340001	ENST00000580482		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000453985	ENST00000535342		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000453985	ENST00000392769		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000453985	ENST00000541355		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000453985	ENST00000537949		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
Frame-shit	ENST00000453985	ENST00000317442		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000453985	ENST00000580482		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
In-frame	ENST00000370732	ENST00000535342		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
In-frame	ENST00000370732	ENST00000392769		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
In-frame	ENST00000370732	ENST00000541355		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
In-frame	ENST00000370732	ENST00000537949		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
In-frame	ENST00000370732	ENST00000317442		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
5CDS-5UTR	ENST00000370732	ENST00000580482		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000482072	ENST00000535342		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000482072	ENST00000392769		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000482072	ENST00000541355		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000482072	ENST00000537949		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000482072	ENST00000317442		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-5UTR	ENST00000482072	ENST00000580482		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000495634	ENST00000535342		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000495634	ENST00000392769		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000495634	ENST00000541355		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000495634	ENST00000537949		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-3CDS	ENST00000495634	ENST00000317442		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
intron-5UTR	ENST00000495634	ENST00000580482		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ABCA9	chr17	67020355	-	CEP112	chr17	63685336	-
5CDS-intron	ENST00000373275	ENST00000341084		TCGA	LD	SARC	TCGA-DX-A3M1-01A	BRWD3	chrX	80047353	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000373275	ENST00000519449		TCGA	LD	SARC	TCGA-DX-A3M1-01A	BRWD3	chrX	80047353	-	RNF19A	chr8	101325600	-
5CDS-intron	ENST00000373275	ENST00000523255		TCGA	LD	SARC	TCGA-DX-A3M1-01A	BRWD3	chrX	80047353	-	RNF19A	chr8	101325600	-
intron-intron	ENST00000473691	ENST00000341084		TCGA	LD	SARC	TCGA-DX-A3M1-01A	BRWD3	chrX	80047353	-	RNF19A	chr8	101325600	-
intron-intron	ENST00000473691	ENST00000519449		TCGA	LD	SARC	TCGA-DX-A3M1-01A	BRWD3	chrX	80047353	-	RNF19A	chr8	101325600	-
intron-intron	ENST00000473691	ENST00000523255		TCGA	LD	SARC	TCGA-DX-A3M1-01A	BRWD3	chrX	80047353	-	RNF19A	chr8	101325600	-
In-frame	ENST00000220763	ENST00000521689		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
In-frame	ENST00000220763	ENST00000254898		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
In-frame	ENST00000220763	ENST00000524308		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000220763	ENST00000522025		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000220763	ENST00000520016		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
5CDS-intron	ENST00000220763	ENST00000518238		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
intron-3CDS	ENST00000529551	ENST00000521689		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
intron-3CDS	ENST00000529551	ENST00000254898		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
intron-3CDS	ENST00000529551	ENST00000524308		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
intron-intron	ENST00000529551	ENST00000522025		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
intron-intron	ENST00000529551	ENST00000520016		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
intron-intron	ENST00000529551	ENST00000518238		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CPQ	chr8	97797558	+	MATN2	chr8	98943181	+
5CDS-5UTR	ENST00000318080	ENST00000411790		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11-IT1	chr9	124647854	-
intron-5UTR	ENST00000464290	ENST00000411790		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11-IT1	chr9	124647854	-
intron-5UTR	ENST00000393384	ENST00000411790		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CRAT	chr9	131859529	-	TTLL11-IT1	chr9	124647854	-
Frame-shit	ENST00000398073	ENST00000303617		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
Frame-shit	ENST00000398073	ENST00000375731		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
5CDS-intron	ENST00000398073	ENST00000422391		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
5CDS-intron	ENST00000398073	ENST00000478465		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
Frame-shit	ENST00000548823	ENST00000303617		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
Frame-shit	ENST00000548823	ENST00000375731		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
5CDS-intron	ENST00000548823	ENST00000422391		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
5CDS-intron	ENST00000548823	ENST00000478465		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
intron-3CDS	ENST00000547701	ENST00000303617		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
intron-3CDS	ENST00000547701	ENST00000375731		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
intron-intron	ENST00000547701	ENST00000422391		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
intron-intron	ENST00000547701	ENST00000478465		TCGA	LD	SARC	TCGA-DX-A3M1-01A	CTDSP2	chr12	58240155	-	AUH	chr9	93976707	-
In-frame	ENST00000548249	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000548249	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000548249	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000548249	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
5CDS-intron	ENST00000548249	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000537439	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000537439	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000537439	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000537439	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-intron	ENST00000537439	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000434715	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000434715	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000434715	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000434715	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
5CDS-intron	ENST00000434715	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000543672	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000543672	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000543672	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
In-frame	ENST00000543672	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
5CDS-intron	ENST00000543672	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000551400	ENST00000393240		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000551400	ENST00000261205		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000551400	ENST00000457153		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-3CDS	ENST00000551400	ENST00000552744		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
intron-intron	ENST00000551400	ENST00000549454		TCGA	LD	SARC	TCGA-DX-A3M1-01A	DCTN2	chr12	57940811	-	SYT1	chr12	79747282	+
5CDS-5UTR	ENST00000552864	ENST00000489520		TCGA	LD	SARC	TCGA-DX-A3M1-01A	LIN7A	chr12	81283030	-	RPSAP52	chr12	66152811	-
In-frame	ENST00000462284	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000462284	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000462284	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000462284	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000462284	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000356290	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000356290	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000356290	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000356290	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000356290	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000540827	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000540827	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000540827	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000540827	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000540827	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000258149	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000258149	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000258149	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000258149	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000258149	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000428863	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000428863	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000428863	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000428863	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000428863	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393412	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393412	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393412	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000393412	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000393412	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000258148	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000258148	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000258148	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000258148	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000258148	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000544561	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000544561	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000544561	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000544561	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000544561	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393410	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393410	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393410	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000393410	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000393410	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393413	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393413	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000393413	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000393413	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000393413	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000517852	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000517852	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000517852	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000517852	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000517852	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000545204	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000545204	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000545204	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000545204	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000545204	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000350057	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000350057	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000350057	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000350057	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000350057	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000360430	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000360430	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000360430	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000360430	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000360430	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000299252	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000299252	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000299252	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000299252	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000299252	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000348801	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000348801	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000348801	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000348801	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000348801	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000478070	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000478070	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
In-frame	ENST00000478070	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000478070	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5CDS-intron	ENST00000478070	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
intron-3CDS	ENST00000544125	ENST00000375751		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
intron-3CDS	ENST00000544125	ENST00000375754		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
intron-3CDS	ENST00000544125	ENST00000375747		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
intron-intron	ENST00000544125	ENST00000476708		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
intron-intron	ENST00000544125	ENST00000375746		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MDM2	chr12	69203072	+	SYK	chr9	93657810	+
5UTR-3CDS	ENST00000549982	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000549982	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000549982	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000549982	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-5UTR	ENST00000549982	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000361630	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000361630	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000361630	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000361630	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-5UTR	ENST00000361630	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000552217	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000552217	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000552217	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000552217	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-5UTR	ENST00000552217	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000393128	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000393128	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000393128	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000393128	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-5UTR	ENST00000393128	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000547098	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000547098	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000547098	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000547098	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-5UTR	ENST00000547098	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000548545	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000548545	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000548545	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000548545	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-5UTR	ENST00000548545	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000552938	ENST00000343702		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000552938	ENST00000344911		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000552938	ENST00000538383		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-3CDS	ENST00000552938	ENST00000553059		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
intron-5UTR	ENST00000552938	ENST00000552603		TCGA	LD	SARC	TCGA-DX-A3M1-01A	MRPL42	chr12	93861330	+	NTN4	chr12	96131922	-
5UTR-3CDS	ENST00000550187	ENST00000373146		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5UTR-5UTR	ENST00000550187	ENST00000373141		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5UTR-5UTR	ENST00000550187	ENST00000291839		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5UTR-5UTR	ENST00000550187	ENST00000373142		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5UTR-5UTR	ENST00000550187	ENST00000373144		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5UTR-5UTR	ENST00000550187	ENST00000485320		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5UTR-5UTR	ENST00000550187	ENST00000542456		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-3CDS	ENST00000547157	ENST00000373146		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547157	ENST00000373141		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547157	ENST00000291839		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547157	ENST00000373142		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547157	ENST00000373144		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547157	ENST00000485320		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547157	ENST00000542456		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
In-frame	ENST00000327772	ENST00000373146		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5CDS-5UTR	ENST00000327772	ENST00000373141		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5CDS-5UTR	ENST00000327772	ENST00000291839		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5CDS-5UTR	ENST00000327772	ENST00000373142		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5CDS-5UTR	ENST00000327772	ENST00000373144		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5CDS-5UTR	ENST00000327772	ENST00000485320		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
5CDS-5UTR	ENST00000327772	ENST00000542456		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-3CDS	ENST00000547986	ENST00000373146		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547986	ENST00000373141		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547986	ENST00000291839		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547986	ENST00000373142		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547986	ENST00000373144		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547986	ENST00000485320		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
intron-5UTR	ENST00000547986	ENST00000542456		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NDUFA12	chr12	95387946	-	ST6GALNAC6	chr9	130658611	-
In-frame	ENST00000356175	ENST00000225823		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
In-frame	ENST00000356175	ENST00000359872		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000356175	ENST00000448983		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
In-frame	ENST00000358273	ENST00000225823		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
In-frame	ENST00000358273	ENST00000359872		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
5CDS-5UTR	ENST00000358273	ENST00000448983		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000431387	ENST00000225823		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000431387	ENST00000359872		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-5UTR	ENST00000431387	ENST00000448983		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000581113	ENST00000225823		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000581113	ENST00000359872		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-5UTR	ENST00000581113	ENST00000448983		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000417592	ENST00000225823		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000417592	ENST00000359872		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-5UTR	ENST00000417592	ENST00000448983		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000444181	ENST00000225823		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000444181	ENST00000359872		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-5UTR	ENST00000444181	ENST00000448983		TCGA	LD	SARC	TCGA-DX-A3M1-01A	NF1	chr17	29560231	+	ASIC2	chr17	31439085	-
intron-3CDS	ENST00000330137	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000330137	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000330137	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
In-frame	ENST00000580541	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
In-frame	ENST00000580541	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
5CDS-intron	ENST00000580541	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000578105	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000578105	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000578105	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000583927	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000583927	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000583927	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000581068	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000581068	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000581068	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
In-frame	ENST00000437036	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
In-frame	ENST00000437036	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
5CDS-intron	ENST00000437036	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000583380	ENST00000184956		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-3CDS	ENST00000583380	ENST00000585976		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
intron-intron	ENST00000583380	ENST00000585712		TCGA	LD	SARC	TCGA-DX-A3M1-01A	SKA2	chr17	57232317	-	HEATR6	chr17	58137457	-
Frame-shit	ENST00000373146	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000373146	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000373146	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000373146	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373141	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373141	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373141	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000373141	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000291839	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000291839	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000291839	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000291839	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000373142	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000373142	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000373142	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000373142	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373144	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373144	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373144	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000373144	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000485320	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000485320	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5UTR-3CDS	ENST00000485320	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5UTR-intron	ENST00000485320	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000542456	ENST00000229179		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000542456	ENST00000378905		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
Frame-shit	ENST00000542456	ENST00000539906		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
5CDS-intron	ENST00000542456	ENST00000401003		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130649763	-	NUP107	chr12	69135593	+
In-frame	ENST00000373146	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-intron	ENST00000373146	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
Frame-shit	ENST00000373141	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-intron	ENST00000373141	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
Frame-shit	ENST00000291839	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-intron	ENST00000291839	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
In-frame	ENST00000373142	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-intron	ENST00000373142	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
Frame-shit	ENST00000373144	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-intron	ENST00000373144	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5UTR-3CDS	ENST00000485320	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5UTR-intron	ENST00000485320	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
Frame-shit	ENST00000542456	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-intron	ENST00000542456	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ST6GALNAC6	chr9	130656791	-	PAWR	chr12	79990438	-
5CDS-5UTR	ENST00000293328	ENST00000278550		TCGA	LD	SARC	TCGA-DX-A3M1-01A	STAT5B	chr17	40368032	-	TENM4	chr11	78926954	-
5CDS-intron	ENST00000293328	ENST00000533038		TCGA	LD	SARC	TCGA-DX-A3M1-01A	STAT5B	chr17	40368032	-	TENM4	chr11	78926954	-
intron-5UTR	ENST00000424789	ENST00000569074		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TANC2	chr17	61228741	+	CASC17	chr17	69181796	-
intron-5UTR	ENST00000389520	ENST00000569074		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TANC2	chr17	61228741	+	CASC17	chr17	69181796	-
5CDS-intron	ENST00000550746	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000550746	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000550746	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000319106	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000319106	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000319106	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000485960	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000485960	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5CDS-intron	ENST00000485960	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5UTR-intron	ENST00000393309	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5UTR-intron	ENST00000393309	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5UTR-intron	ENST00000393309	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
intron-intron	ENST00000548679	ENST00000262027		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
intron-intron	ENST00000548679	ENST00000315473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
intron-intron	ENST00000548679	ENST00000447721		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TBC1D15	chr12	72274387	+	MARS	chr12	57881720	+
5UTR-5UTR	ENST00000396671	ENST00000287766		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
5UTR-3UTR	ENST00000396671	ENST00000462473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
5UTR-intron	ENST00000396671	ENST00000536032		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-5UTR	ENST00000356447	ENST00000287766		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-3UTR	ENST00000356447	ENST00000462473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-intron	ENST00000356447	ENST00000536032		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-5UTR	ENST00000416420	ENST00000287766		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-3UTR	ENST00000416420	ENST00000462473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-intron	ENST00000416420	ENST00000536032		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-5UTR	ENST00000280696	ENST00000287766		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-3UTR	ENST00000280696	ENST00000462473		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
intron-intron	ENST00000280696	ENST00000536032		TCGA	LD	SARC	TCGA-DX-A3M1-01A	THRB	chr3	24536178	-	SLC6A1	chr3	11057358	+
5CDS-3UTR	ENST00000397906	ENST00000406644		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTC28	chr22	28492178	-	TEF	chr22	41794843	+
5CDS-3UTR	ENST00000397906	ENST00000266304		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTC28	chr22	28492178	-	TEF	chr22	41794843	+
intron-3UTR	ENST00000490475	ENST00000406644		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTC28	chr22	28492178	-	TEF	chr22	41794843	+
intron-3UTR	ENST00000490475	ENST00000266304		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTC28	chr22	28492178	-	TEF	chr22	41794843	+
5CDS-intron	ENST00000321582	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5CDS-intron	ENST00000321582	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5CDS-intron	ENST00000321582	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5CDS-intron	ENST00000321582	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5CDS-intron	ENST00000321582	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5UTR-intron	ENST00000474723	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5UTR-intron	ENST00000474723	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5UTR-intron	ENST00000474723	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5UTR-intron	ENST00000474723	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
5UTR-intron	ENST00000474723	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
intron-intron	ENST00000373776	ENST00000315192		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
intron-intron	ENST00000373776	ENST00000548883		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
intron-intron	ENST00000373776	ENST00000548048		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
intron-intron	ENST00000373776	ENST00000378113		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
intron-intron	ENST00000373776	ENST00000548789		TCGA	LD	SARC	TCGA-DX-A3M1-01A	TTLL11	chr9	124622616	-	C12orf42	chr12	103657149	-
Frame-shit	ENST00000517970	ENST00000517820		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000517970	ENST00000520733		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000517970	ENST00000309822		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000517970	ENST00000357148		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000349423	ENST00000517820		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000349423	ENST00000520733		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000349423	ENST00000309822		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000349423	ENST00000357148		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000341922	ENST00000517820		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000341922	ENST00000520733		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000341922	ENST00000309822		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000341922	ENST00000357148		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000265428	ENST00000517820		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000265428	ENST00000520733		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000265428	ENST00000309822		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
5CDS-intron	ENST00000265428	ENST00000357148		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
intron-3CDS	ENST00000523863	ENST00000517820		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
intron-3CDS	ENST00000523863	ENST00000520733		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
intron-intron	ENST00000523863	ENST00000309822		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
intron-intron	ENST00000523863	ENST00000357148		TCGA	LD	SARC	TCGA-DX-A3M1-01A	WWP1	chr8	87443972	+	UTP23	chr8	117861127	+
Frame-shit	ENST00000332707	ENST00000261267		TCGA	LD	SARC	TCGA-DX-A3M1-01A	XPOT	chr12	64838911	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000332707	ENST00000549690		TCGA	LD	SARC	TCGA-DX-A3M1-01A	XPOT	chr12	64838911	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000332707	ENST00000548839		TCGA	LD	SARC	TCGA-DX-A3M1-01A	XPOT	chr12	64838911	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000332707	ENST00000261637		TCGA	LD	SARC	TCGA-DX-A3M1-01A	XPOT	chr12	64833095	+	UTP20	chr12	101720859	+
5UTR-3CDS	ENST00000314393	ENST00000310357		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ZHX2	chr8	123794185	+	GPRC6A	chr6	117150119	-
5UTR-3CDS	ENST00000314393	ENST00000530250		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ZHX2	chr8	123794185	+	GPRC6A	chr6	117150119	-
5UTR-3CDS	ENST00000314393	ENST00000368549		TCGA	LD	SARC	TCGA-DX-A3M1-01A	ZHX2	chr8	123794185	+	GPRC6A	chr6	117150119	-
5UTR-3CDS	ENST00000318948	ENST00000334398		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
5UTR-intron	ENST00000318948	ENST00000369439		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
5UTR-intron	ENST00000318948	ENST00000461075		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
intron-3CDS	ENST00000400199	ENST00000334398		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
intron-intron	ENST00000400199	ENST00000369439		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
intron-intron	ENST00000400199	ENST00000461075		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
5UTR-3CDS	ENST00000400202	ENST00000334398		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
5UTR-intron	ENST00000400202	ENST00000369439		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
5UTR-intron	ENST00000400202	ENST00000461075		TCGA	LD	SARC	TCGA-DX-A3M2-01A	NRIP1	chr21	16386665	-	TMLHE	chrX	154722156	-
5CDS-intron	ENST00000309733	ENST00000420470		TCGA	LD	SARC	TCGA-DX-A3U5-01A	C4orf32	chr4	113066889	+	ARHGEF38	chr4	106627460	+
5CDS-intron	ENST00000309733	ENST00000508036		TCGA	LD	SARC	TCGA-DX-A3U5-01A	C4orf32	chr4	113066889	+	ARHGEF38	chr4	106627460	+
5CDS-intron	ENST00000309733	ENST00000265154		TCGA	LD	SARC	TCGA-DX-A3U5-01A	C4orf32	chr4	113066889	+	ARHGEF38	chr4	106627460	+
5UTR-5UTR	ENST00000311083	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000311083	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000311083	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000311083	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000311083	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000311083	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-5UTR	ENST00000552330	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000552330	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000552330	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000552330	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000552330	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000552330	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
intron-5UTR	ENST00000546966	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
intron-intron	ENST00000546966	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
intron-intron	ENST00000546966	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
intron-intron	ENST00000546966	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
intron-intron	ENST00000546966	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
intron-intron	ENST00000546966	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-5UTR	ENST00000547435	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000547435	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000547435	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000547435	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000547435	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-intron	ENST00000547435	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	PTPRR	chr12	71314347	-
5UTR-3CDS	ENST00000311083	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000311083	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000311083	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000552330	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000552330	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000552330	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000546966	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000546966	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000546966	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000547435	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000547435	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3CDS	ENST00000547435	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	CSRP2	chr12	77272718	-	SNRPF	chr12	96254946	+
5UTR-3UTR	ENST00000264211	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000264211	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000264211	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3UTR	ENST00000400422	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000400422	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000400422	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3UTR	ENST00000602326	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000602326	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000602326	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3UTR	ENST00000374935	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000374935	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000374935	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3UTR	ENST00000374937	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000374937	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000374937	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-3UTR	ENST00000536266	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000536266	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000536266	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-3UTR	ENST00000374933	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000374933	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000374933	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-3UTR	ENST00000544689	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000544689	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000544689	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3UTR	ENST00000356916	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000356916	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000356916	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3UTR	ENST00000374927	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000374927	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-intron	ENST00000374927	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-3UTR	ENST00000537738	ENST00000328089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000537738	ENST00000357898		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
intron-intron	ENST00000537738	ENST00000377399		TCGA	LD	SARC	TCGA-DX-A3U5-01A	EIF4G3	chr1	21377359	-	SPSB1	chr1	9429332	+
5UTR-3CDS	ENST00000299293	ENST00000256190		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
5UTR-intron	ENST00000299293	ENST00000527019		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
intron-3CDS	ENST00000549921	ENST00000256190		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
intron-intron	ENST00000549921	ENST00000527019		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
intron-3CDS	ENST00000550389	ENST00000256190		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
intron-intron	ENST00000550389	ENST00000527019		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
intron-3CDS	ENST00000397997	ENST00000256190		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
intron-intron	ENST00000397997	ENST00000527019		TCGA	LD	SARC	TCGA-DX-A3U5-01A	FRS2	chr12	69931763	+	SBF2	chr11	9817504	-
Frame-shit	ENST00000266754	ENST00000369091		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000266754	ENST00000369096		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000266754	ENST00000369089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000547754	ENST00000369091		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000547754	ENST00000369096		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000547754	ENST00000369089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000547739	ENST00000369091		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000547739	ENST00000369096		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
intron-3CDS	ENST00000547739	ENST00000369089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000539410	ENST00000369091		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000539410	ENST00000369096		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000539410	ENST00000369089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000537247	ENST00000369091		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000537247	ENST00000369096		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
Frame-shit	ENST00000537247	ENST00000369089		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GAS2L3	chr12	101012365	+	PRDM1	chr6	106552700	+
5CDS-5UTR	ENST00000228827	ENST00000389153		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5CDS-5UTR	ENST00000228827	ENST00000608853		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5CDS-5UTR	ENST00000228827	ENST00000377617		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5CDS-5UTR	ENST00000228827	ENST00000550104		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5CDS-5UTR	ENST00000228827	ENST00000542287		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5CDS-intron	ENST00000228827	ENST00000535949		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5CDS-intron	ENST00000228827	ENST00000549455		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000543199	ENST00000389153		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000543199	ENST00000608853		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000543199	ENST00000377617		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000543199	ENST00000550104		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000543199	ENST00000542287		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-intron	ENST00000543199	ENST00000535949		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-intron	ENST00000543199	ENST00000549455		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000537466	ENST00000389153		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000537466	ENST00000608853		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000537466	ENST00000377617		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000537466	ENST00000550104		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000537466	ENST00000542287		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-intron	ENST00000537466	ENST00000535949		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-intron	ENST00000537466	ENST00000549455		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000552180	ENST00000389153		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000552180	ENST00000608853		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000552180	ENST00000377617		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000552180	ENST00000550104		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-5UTR	ENST00000552180	ENST00000542287		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-intron	ENST00000552180	ENST00000535949		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
intron-intron	ENST00000552180	ENST00000549455		TCGA	LD	SARC	TCGA-DX-A3U5-01A	GPN3	chr12	110905961	-	ATXN2	chr12	111993723	-
5UTR-3CDS	ENST00000377560	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000377560	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000377560	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-intron	ENST00000377560	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-intron	ENST00000377560	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000430131	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000430131	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000430131	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-intron	ENST00000430131	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-intron	ENST00000430131	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000550722	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000550722	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000550722	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-intron	ENST00000550722	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-intron	ENST00000550722	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
intron-3CDS	ENST00000549141	ENST00000280758		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
intron-3CDS	ENST00000549141	ENST00000420571		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
intron-3CDS	ENST00000549141	ENST00000490090		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
intron-intron	ENST00000549141	ENST00000357167		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
intron-intron	ENST00000549141	ENST00000494235		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	BTBD11	chr12	107914264	+
5UTR-3CDS	ENST00000377560	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000377560	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000377560	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-5UTR	ENST00000377560	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000430131	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000430131	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000430131	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-5UTR	ENST00000430131	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000550722	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000550722	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-3CDS	ENST00000550722	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5UTR-5UTR	ENST00000550722	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
intron-3CDS	ENST00000549141	ENST00000228740		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
intron-3CDS	ENST00000549141	ENST00000552789		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
intron-3CDS	ENST00000549141	ENST00000413268		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
intron-5UTR	ENST00000549141	ENST00000548375		TCGA	LD	SARC	TCGA-DX-A3U5-01A	HECTD4	chr12	112819756	-	LTA4H	chr12	96400187	-
5CDS-5UTR	ENST00000552912	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000552912	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000552912	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000552912	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000552912	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000242591	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000242591	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000242591	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000242591	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000242591	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000361948	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000361948	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000361948	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000361948	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000361948	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
3UTR-5UTR	ENST00000549009	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
3UTR-intron	ENST00000549009	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
3UTR-intron	ENST00000549009	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
3UTR-intron	ENST00000549009	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
3UTR-intron	ENST00000549009	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A3U5-01A	IFT81	chr12	110574665	+	TSPAN8	chr12	71676599	-
intron-intron	ENST00000536525	ENST00000537081		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-5UTR	ENST00000536525	ENST00000257861		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000536525	ENST00000550083		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000397909	ENST00000537081		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-5UTR	ENST00000397909	ENST00000257861		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000397909	ENST00000550083		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000228327	ENST00000537081		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-5UTR	ENST00000228327	ENST00000257861		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000228327	ENST00000550083		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000266692	ENST00000537081		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-5UTR	ENST00000266692	ENST00000257861		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000266692	ENST00000550083		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000552300	ENST00000537081		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-5UTR	ENST00000552300	ENST00000257861		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000552300	ENST00000550083		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000541270	ENST00000537081		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-5UTR	ENST00000541270	ENST00000257861		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
intron-intron	ENST00000541270	ENST00000550083		TCGA	LD	SARC	TCGA-DX-A3U5-01A	NAV3	chr12	77718994	+	AVIL	chr12	58209842	-
Frame-shit	ENST00000265174	ENST00000282020		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PAPSS1	chr4	108565958	-	GRID2	chr4	94436367	+
5CDS-intron	ENST00000265174	ENST00000505687		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PAPSS1	chr4	108565958	-	GRID2	chr4	94436367	+
5CDS-intron	ENST00000265174	ENST00000510992		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PAPSS1	chr4	108565958	-	GRID2	chr4	94436367	+
intron-3CDS	ENST00000511304	ENST00000282020		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PAPSS1	chr4	108565958	-	GRID2	chr4	94436367	+
intron-intron	ENST00000511304	ENST00000505687		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PAPSS1	chr4	108565958	-	GRID2	chr4	94436367	+
intron-intron	ENST00000511304	ENST00000510992		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PAPSS1	chr4	108565958	-	GRID2	chr4	94436367	+
intron-3CDS	ENST00000531326	ENST00000202917		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
intron-3CDS	ENST00000531326	ENST00000445409		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
intron-3CDS	ENST00000531326	ENST00000452357		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
intron-3CDS	ENST00000531326	ENST00000551241		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
intron-intron	ENST00000531326	ENST00000553185		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000392597	ENST00000202917		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000392597	ENST00000445409		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000392597	ENST00000452357		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000392597	ENST00000551241		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
5CDS-intron	ENST00000392597	ENST00000553185		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000351677	ENST00000202917		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000351677	ENST00000445409		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000351677	ENST00000452357		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
Frame-shit	ENST00000351677	ENST00000551241		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
5CDS-intron	ENST00000351677	ENST00000553185		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPN11	chr12	112888316	+	OAS1	chr12	113354314	+
In-frame	ENST00000283228	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
In-frame	ENST00000283228	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
In-frame	ENST00000283228	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000440835	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000440835	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000440835	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000537619	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000537619	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000537619	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000378778	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000378778	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000378778	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000342084	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000342084	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000342084	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000549308	ENST00000266735		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000549308	ENST00000553192		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
intron-3CDS	ENST00000549308	ENST00000552085		TCGA	LD	SARC	TCGA-DX-A3U5-01A	PTPRR	chr12	71314113	-	SNRPF	chr12	96254946	+
In-frame	ENST00000308488	ENST00000426496		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
In-frame	ENST00000308488	ENST00000392078		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000308488	ENST00000476522		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000308488	ENST00000367742		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000308488	ENST00000338920		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
In-frame	ENST00000360355	ENST00000426496		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
In-frame	ENST00000360355	ENST00000392078		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000360355	ENST00000476522		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000360355	ENST00000367742		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000360355	ENST00000338920		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
In-frame	ENST00000480887	ENST00000426496		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
In-frame	ENST00000480887	ENST00000392078		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000480887	ENST00000476522		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000480887	ENST00000367742		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5CDS-intron	ENST00000480887	ENST00000338920		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
intron-3CDS	ENST00000530604	ENST00000426496		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
intron-3CDS	ENST00000530604	ENST00000392078		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
intron-intron	ENST00000530604	ENST00000476522		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
intron-intron	ENST00000530604	ENST00000367742		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
intron-intron	ENST00000530604	ENST00000338920		TCGA	LD	SARC	TCGA-DX-A3U5-01A	RSF1	chr11	77396150	-	PRRC2C	chr1	171535372	+
5UTR-5UTR	ENST00000367505	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000367505	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000367505	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000367505	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000367505	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
5UTR-5UTR	ENST00000367505	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000367503	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000367503	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000367503	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000367503	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000367503	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000367503	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000438092	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000438092	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000438092	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000438092	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000438092	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000438092	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000275233	ENST00000341156		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000275233	ENST00000418555		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000275233	ENST00000449184		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000275233	ENST00000550764		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000275233	ENST00000552350		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
intron-5UTR	ENST00000275233	ENST00000550943		TCGA	LD	SARC	TCGA-DX-A3U5-01A	SHPRH	chr6	146285293	-	B4GALNT1	chr12	58025916	-
Frame-shit	ENST00000448120	ENST00000358409		TCGA	LD	SARC	TCGA-DX-A3U5-01A	TULP3	chr12	3018746	+	TEAD4	chr12	3120170	+
Frame-shit	ENST00000448120	ENST00000359864		TCGA	LD	SARC	TCGA-DX-A3U5-01A	TULP3	chr12	3018746	+	TEAD4	chr12	3120170	+
5CDS-5UTR	ENST00000448120	ENST00000397122		TCGA	LD	SARC	TCGA-DX-A3U5-01A	TULP3	chr12	3018746	+	TEAD4	chr12	3120170	+
Frame-shit	ENST00000397132	ENST00000358409		TCGA	LD	SARC	TCGA-DX-A3U5-01A	TULP3	chr12	3018746	+	TEAD4	chr12	3120170	+
Frame-shit	ENST00000397132	ENST00000359864		TCGA	LD	SARC	TCGA-DX-A3U5-01A	TULP3	chr12	3018746	+	TEAD4	chr12	3120170	+
5CDS-5UTR	ENST00000397132	ENST00000397122		TCGA	LD	SARC	TCGA-DX-A3U5-01A	TULP3	chr12	3018746	+	TEAD4	chr12	3120170	+
Frame-shit	ENST00000548249	ENST00000348749		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000548249	ENST00000261007		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000548249	ENST00000409219		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
5CDS-intron	ENST00000548249	ENST00000409542		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
5CDS-intron	ENST00000548249	ENST00000409323		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-3CDS	ENST00000537439	ENST00000348749		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-3CDS	ENST00000537439	ENST00000261007		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-3CDS	ENST00000537439	ENST00000409219		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-intron	ENST00000537439	ENST00000409542		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-intron	ENST00000537439	ENST00000409323		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000434715	ENST00000348749		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000434715	ENST00000261007		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000434715	ENST00000409219		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
5CDS-intron	ENST00000434715	ENST00000409542		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
5CDS-intron	ENST00000434715	ENST00000409323		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000543672	ENST00000348749		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000543672	ENST00000261007		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
Frame-shit	ENST00000543672	ENST00000409219		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
5CDS-intron	ENST00000543672	ENST00000409542		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
5CDS-intron	ENST00000543672	ENST00000409323		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-3CDS	ENST00000551400	ENST00000348749		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-3CDS	ENST00000551400	ENST00000261007		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-3CDS	ENST00000551400	ENST00000409219		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-intron	ENST00000551400	ENST00000409542		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
intron-intron	ENST00000551400	ENST00000409323		TCGA	LD	SARC	TCGA-DX-A3U6-01A	DCTN2	chr12	57940811	-	CHRNA1	chr2	175619142	-
In-frame	ENST00000355192	ENST00000392347		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
In-frame	ENST00000355192	ENST00000389641		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000355192	ENST00000392346		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000355192	ENST00000327026		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000355192	ENST00000392343		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
In-frame	ENST00000308259	ENST00000392347		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
In-frame	ENST00000308259	ENST00000389641		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000308259	ENST00000392346		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000308259	ENST00000327026		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000308259	ENST00000392343		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000540804	ENST00000392347		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
Frame-shit	ENST00000540804	ENST00000389641		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000540804	ENST00000392346		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000540804	ENST00000327026		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000540804	ENST00000392343		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
In-frame	ENST00000535664	ENST00000392347		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
In-frame	ENST00000535664	ENST00000389641		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000535664	ENST00000392346		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000535664	ENST00000327026		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
5CDS-intron	ENST00000535664	ENST00000392343		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000538725	ENST00000392347		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000538725	ENST00000389641		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
intron-intron	ENST00000538725	ENST00000392346		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
intron-intron	ENST00000538725	ENST00000327026		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
intron-intron	ENST00000538725	ENST00000392343		TCGA	LD	SARC	TCGA-DX-A3U6-01A	MSRB3	chr12	65847605	+	CCDC57	chr17	80059742	-
intron-3CDS	ENST00000413953	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-intron	ENST00000413953	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
5UTR-3CDS	ENST00000347140	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
5UTR-intron	ENST00000347140	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000358907	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-intron	ENST00000358907	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
5UTR-3CDS	ENST00000402412	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
5UTR-intron	ENST00000402412	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000441731	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-intron	ENST00000441731	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000403821	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-intron	ENST00000403821	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000546843	ENST00000377182		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-intron	ENST00000546843	ENST00000460688		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000413953	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-intron	ENST00000413953	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
5UTR-3CDS	ENST00000347140	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
5UTR-intron	ENST00000347140	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-3CDS	ENST00000358907	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-intron	ENST00000358907	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
5UTR-3CDS	ENST00000402412	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
5UTR-intron	ENST00000402412	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-3CDS	ENST00000441731	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-intron	ENST00000441731	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-3CDS	ENST00000403821	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-intron	ENST00000403821	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-3CDS	ENST00000546843	ENST00000333850		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
intron-intron	ENST00000546843	ENST00000546576		TCGA	LD	SARC	TCGA-DX-A3U6-01A	R3HDM2	chr12	57789532	-	TPH2	chr12	72366299	+
Frame-shit	ENST00000275159	ENST00000441448		TCGA	LD	SARC	TCGA-DX-A3U6-01A	TBC1D32	chr6	121624763	-	RPF2	chr6	111345386	+
Frame-shit	ENST00000398212	ENST00000441448		TCGA	LD	SARC	TCGA-DX-A3U6-01A	TBC1D32	chr6	121624763	-	RPF2	chr6	111345386	+
intron-3CDS	ENST00000398197	ENST00000441448		TCGA	LD	SARC	TCGA-DX-A3U6-01A	TBC1D32	chr6	121624763	-	RPF2	chr6	111345386	+
5UTR-intron	ENST00000599470	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599470	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599470	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599470	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599470	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-5UTR	ENST00000599470	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000321944	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000321944	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000321944	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000321944	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000321944	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-5UTR	ENST00000321944	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000358301	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000358301	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000358301	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000358301	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000358301	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-5UTR	ENST00000358301	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
3UTR-intron	ENST00000597766	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
3UTR-intron	ENST00000597766	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
3UTR-intron	ENST00000597766	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
3UTR-intron	ENST00000597766	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
3UTR-intron	ENST00000597766	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
3UTR-5UTR	ENST00000597766	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000593690	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000593690	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000593690	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000593690	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000593690	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-5UTR	ENST00000593690	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599386	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599386	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599386	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599386	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-intron	ENST00000599386	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
5UTR-5UTR	ENST00000599386	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000435673	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000435673	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000435673	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000435673	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000435673	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-5UTR	ENST00000435673	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000360442	ENST00000400105		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000360442	ENST00000317931		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000360442	ENST00000284898		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000360442	ENST00000400104		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-intron	ENST00000360442	ENST00000535782		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
intron-5UTR	ENST00000360442	ENST00000578677		TCGA	LD	SARC	TCGA-DX-A3U7-01A	PAK4	chr19	39616559	+	L3MBTL4	chr18	6356806	-
Frame-shit	ENST00000262803	ENST00000262812		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000262803	ENST00000349893		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000262803	ENST00000600932		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000262803	ENST00000598969		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000262803	ENST00000351079		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000599848	ENST00000262812		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000599848	ENST00000349893		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000599848	ENST00000600932		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000599848	ENST00000598969		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000599848	ENST00000351079		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
3UTR-3CDS	ENST00000600310	ENST00000262812		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
3UTR-3CDS	ENST00000600310	ENST00000349893		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
3UTR-3CDS	ENST00000600310	ENST00000600932		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
3UTR-3CDS	ENST00000600310	ENST00000598969		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
3UTR-3CDS	ENST00000600310	ENST00000351079		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961026	+	COPE	chr19	19023852	-
Frame-shit	ENST00000262803	ENST00000247003		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
5CDS-5UTR	ENST00000262803	ENST00000438170		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
5CDS-intron	ENST00000262803	ENST00000599156		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
Frame-shit	ENST00000599848	ENST00000247003		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
5CDS-5UTR	ENST00000599848	ENST00000438170		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
5CDS-intron	ENST00000599848	ENST00000599156		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
3UTR-3CDS	ENST00000600310	ENST00000247003		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
3UTR-5UTR	ENST00000600310	ENST00000438170		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
3UTR-intron	ENST00000600310	ENST00000599156		TCGA	LD	SARC	TCGA-DX-A3U7-01A	UPF1	chr19	18961051	+	DDX49	chr19	19031460	+
5CDS-intron	ENST00000542455	ENST00000483910		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000542455	ENST00000462152		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000542455	ENST00000265261		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000542455	ENST00000394162		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000542455	ENST00000468553		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587143	ENST00000483910		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587143	ENST00000462152		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587143	ENST00000265261		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587143	ENST00000394162		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587143	ENST00000468553		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000588578	ENST00000483910		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000588578	ENST00000462152		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000588578	ENST00000265261		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000588578	ENST00000394162		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000588578	ENST00000468553		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587986	ENST00000483910		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587986	ENST00000462152		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587986	ENST00000265261		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587986	ENST00000394162		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000587986	ENST00000468553		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000589319	ENST00000483910		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000589319	ENST00000462152		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000589319	ENST00000265261		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000589319	ENST00000394162		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000589319	ENST00000468553		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000445217	ENST00000483910		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000445217	ENST00000462152		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000445217	ENST00000265261		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000445217	ENST00000394162		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
5CDS-intron	ENST00000445217	ENST00000468553		TCGA	LD	SARC	TCGA-DX-A3U7-01A	ZNF793	chr19	38014356	+	ST3GAL6	chr3	98539632	+
In-frame	ENST00000548898	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
Frame-shit	ENST00000552067	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
In-frame	ENST00000420846	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
In-frame	ENST00000548160	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
Frame-shit	ENST00000546939	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
In-frame	ENST00000552692	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
Frame-shit	ENST00000549117	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
In-frame	ENST00000257857	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
In-frame	ENST00000552754	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
Frame-shit	ENST00000550776	ENST00000297268		TCGA	LD	SARC	TCGA-DX-A3UA-01A	CD63	chr12	56120484	-	COL1A2	chr7	94055062	+
In-frame	ENST00000512215	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000512215	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000394854	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000394854	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000323055	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000323055	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000394853	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000394853	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
5UTR-3CDS	ENST00000507176	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
5UTR-3CDS	ENST00000507176	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000523694	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
In-frame	ENST00000523694	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
intron-3CDS	ENST00000510292	ENST00000503427		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
intron-3CDS	ENST00000510292	ENST00000502717		TCGA	LD	SARC	TCGA-DX-A3UA-01A	PPP3CA	chr4	102267896	-	HMGXB3	chr5	149410304	+
5UTR-5UTR	ENST00000286827	ENST00000286800		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
5UTR-5UTR	ENST00000286827	ENST00000399921		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
5UTR-intron	ENST00000286827	ENST00000462262		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
intron-5UTR	ENST00000541036	ENST00000286800		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
intron-5UTR	ENST00000541036	ENST00000399921		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
intron-intron	ENST00000541036	ENST00000462262		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
5UTR-5UTR	ENST00000469412	ENST00000286800		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
5UTR-5UTR	ENST00000469412	ENST00000399921		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
5UTR-intron	ENST00000469412	ENST00000462262		TCGA	LD	SARC	TCGA-DX-A3UA-01A	TIAM1	chr21	32711558	-	BACH1	chr21	30693542	+
5CDS-3UTR	ENST00000324461	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
5UTR-3UTR	ENST00000588797	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
3UTR-3UTR	ENST00000586976	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
5CDS-3UTR	ENST00000590950	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
5CDS-3UTR	ENST00000593268	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
5CDS-3UTR	ENST00000593164	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
5CDS-3UTR	ENST00000310738	ENST00000473762		TCGA	LD	SARC	TCGA-DX-A3UA-01A	ZNF283	chr19	44339744	+	CEACAMP3	chr19	42108857	+
Frame-shit	ENST00000382159	ENST00000395407		TCGA	LD	SARC	TCGA-DX-A3UF-01A	GNG7	chr19	2520606	-	PAQR5	chr15	69692313	+
Frame-shit	ENST00000382159	ENST00000561153		TCGA	LD	SARC	TCGA-DX-A3UF-01A	GNG7	chr19	2520606	-	PAQR5	chr15	69692313	+
Frame-shit	ENST00000382159	ENST00000340965		TCGA	LD	SARC	TCGA-DX-A3UF-01A	GNG7	chr19	2520606	-	PAQR5	chr15	69692313	+
5CDS-intron	ENST00000382159	ENST00000561027		TCGA	LD	SARC	TCGA-DX-A3UF-01A	GNG7	chr19	2520606	-	PAQR5	chr15	69692313	+
intron-3CDS	ENST00000378434	ENST00000305366		TCGA	LD	SARC	TCGA-DX-A3UF-01A	LPAR6	chr13	48978317	-	TM4SF1	chr3	149093556	-
intron-intron	ENST00000378434	ENST00000472441		TCGA	LD	SARC	TCGA-DX-A3UF-01A	LPAR6	chr13	48978317	-	TM4SF1	chr3	149093556	-
intron-3CDS	ENST00000345941	ENST00000305366		TCGA	LD	SARC	TCGA-DX-A3UF-01A	LPAR6	chr13	48978317	-	TM4SF1	chr3	149093556	-
intron-intron	ENST00000345941	ENST00000472441		TCGA	LD	SARC	TCGA-DX-A3UF-01A	LPAR6	chr13	48978317	-	TM4SF1	chr3	149093556	-
intron-3CDS	ENST00000465365	ENST00000305366		TCGA	LD	SARC	TCGA-DX-A3UF-01A	LPAR6	chr13	48978317	-	TM4SF1	chr3	149093556	-
intron-intron	ENST00000465365	ENST00000472441		TCGA	LD	SARC	TCGA-DX-A3UF-01A	LPAR6	chr13	48978317	-	TM4SF1	chr3	149093556	-
5UTR-3UTR	ENST00000310455	ENST00000520332		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
5UTR-intron	ENST00000310455	ENST00000523898		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
5UTR-intron	ENST00000310455	ENST00000250263		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
5UTR-intron	ENST00000310455	ENST00000519292		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
intron-3UTR	ENST00000519699	ENST00000520332		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
intron-intron	ENST00000519699	ENST00000523898		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
intron-intron	ENST00000519699	ENST00000250263		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
intron-intron	ENST00000519699	ENST00000519292		TCGA	LD	SARC	TCGA-DX-A3UF-01A	PPP1R3B	chr8	9008073	-	ERI1	chr8	8957369	+
In-frame	ENST00000375820	ENST00000360319		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
In-frame	ENST00000375820	ENST00000422373		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
In-frame	ENST00000375820	ENST00000369850		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
In-frame	ENST00000375820	ENST00000369856		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
In-frame	ENST00000375820	ENST00000344736		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
5CDS-5UTR	ENST00000375820	ENST00000498491		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000543140	ENST00000360319		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000543140	ENST00000422373		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000543140	ENST00000369850		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000543140	ENST00000369856		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000543140	ENST00000344736		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-5UTR	ENST00000543140	ENST00000498491		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000467182	ENST00000360319		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000467182	ENST00000422373		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000467182	ENST00000369850		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000467182	ENST00000369856		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-3CDS	ENST00000467182	ENST00000344736		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
intron-5UTR	ENST00000467182	ENST00000498491		TCGA	LD	SARC	TCGA-DX-A48J-01A	COL4A1	chr13	110826247	-	FLNA	chrX	153578575	-
5UTR-3CDS	ENST00000371227	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000371227	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000371227	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000371249	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000371249	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000371249	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000306402	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000306402	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000306402	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000353505	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000353505	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000353505	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000371246	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000371246	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000371246	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000347291	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000347291	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000347291	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000393949	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000393949	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000393949	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000371247	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000371247	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000371247	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000607232	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000607232	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000607232	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000371245	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-intron	ENST00000371245	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-5UTR	ENST00000371245	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000361941	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-intron	ENST00000361941	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-5UTR	ENST00000361941	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000277982	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-intron	ENST00000277982	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-5UTR	ENST00000277982	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000354106	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-intron	ENST00000354106	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-5UTR	ENST00000354106	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000371239	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-intron	ENST00000371239	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-5UTR	ENST00000371239	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000371241	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-intron	ENST00000371241	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-5UTR	ENST00000371241	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-3CDS	ENST00000474353	ENST00000371270		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-intron	ENST00000474353	ENST00000535898		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
5UTR-5UTR	ENST00000474353	ENST00000539050		TCGA	LD	SARC	TCGA-DX-A48J-01A	SORBS1	chr10	97250792	-	CYP2C8	chr10	96827448	-
intron-3CDS	ENST00000437099	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000323816	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
In-frame	ENST00000432992	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
5UTR-3CDS	ENST00000540214	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000585266	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000580865	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000583882	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000542249	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000396115	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000579158	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000578655	ENST00000282344		TCGA	LD	SARC	TCGA-DX-A48K-01A	GAS7	chr17	10101525	-	USP12	chr13	27690733	-
intron-3CDS	ENST00000391826	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
intron-intron	ENST00000391826	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
intron-intron	ENST00000391826	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
intron-5UTR	ENST00000391826	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000595948	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000595948	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000595948	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000595948	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000341114	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000341114	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000341114	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000341114	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	IL4I1	chr19	50430951	-	P4HB	chr17	79805223	-
intron-3CDS	ENST00000422090	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-intron	ENST00000422090	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-intron	ENST00000422090	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-5UTR	ENST00000422090	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-3CDS	ENST00000413454	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-intron	ENST00000413454	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-intron	ENST00000413454	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
intron-5UTR	ENST00000413454	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000352066	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000352066	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000352066	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000352066	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000597029	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000597029	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000597029	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000597029	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000597723	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000597723	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000597723	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000597723	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000596217	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000596217	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000596217	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000596217	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-3CDS	ENST00000600583	ENST00000331483		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000600583	ENST00000576390		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-intron	ENST00000600583	ENST00000439918		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5UTR-5UTR	ENST00000600583	ENST00000472244		TCGA	LD	SARC	TCGA-DX-A48K-01A	NUP62	chr19	50430951	-	P4HB	chr17	79805223	-
5CDS-5UTR	ENST00000292363	ENST00000382159		TCGA	LD	SARC	TCGA-DX-A48K-01A	RNF126	chr19	652233	-	GNG7	chr19	2555186	-
5CDS-intron	ENST00000546495	ENST00000487143		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000546495	ENST00000355999		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000546760	ENST00000487143		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000546760	ENST00000355999		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000552402	ENST00000487143		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000552402	ENST00000355999		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000439424	ENST00000487143		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000439424	ENST00000355999		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000552775	ENST00000487143		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
5CDS-intron	ENST00000552775	ENST00000355999		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
intron-intron	ENST00000547709	ENST00000487143		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
intron-intron	ENST00000547709	ENST00000355999		TCGA	LD	SARC	TCGA-DX-A48L-01A	C17orf49	chr17	6918475	+	STK39	chr2	169018352	-
Frame-shit	ENST00000225296	ENST00000320785		TCGA	LD	SARC	TCGA-DX-A48L-01A	DHX33	chr17	5371891	-	KIF1C	chr17	4918038	+
5CDS-3UTR	ENST00000225296	ENST00000573815		TCGA	LD	SARC	TCGA-DX-A48L-01A	DHX33	chr17	5371891	-	KIF1C	chr17	4918038	+
Frame-shit	ENST00000433302	ENST00000320785		TCGA	LD	SARC	TCGA-DX-A48L-01A	DHX33	chr17	5371891	-	KIF1C	chr17	4918038	+
5CDS-3UTR	ENST00000433302	ENST00000573815		TCGA	LD	SARC	TCGA-DX-A48L-01A	DHX33	chr17	5371891	-	KIF1C	chr17	4918038	+
5UTR-3CDS	ENST00000376250	ENST00000575780		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
5UTR-3CDS	ENST00000376250	ENST00000355025		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
5UTR-3CDS	ENST00000376250	ENST00000396829		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
5UTR-3CDS	ENST00000376250	ENST00000576820		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
5UTR-3CDS	ENST00000376250	ENST00000574617		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
intron-3CDS	ENST00000455100	ENST00000575780		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
intron-3CDS	ENST00000455100	ENST00000355025		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
intron-3CDS	ENST00000455100	ENST00000396829		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
intron-3CDS	ENST00000455100	ENST00000576820		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
intron-3CDS	ENST00000455100	ENST00000574617		TCGA	LD	SARC	TCGA-DX-A48L-01A	GGACT	chr13	101236079	-	INCA1	chr17	4893560	-
5CDS-3UTR	ENST00000431639	ENST00000313486		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000431639	ENST00000539476		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000316024	ENST00000313486		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000316024	ENST00000539476		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000457584	ENST00000313486		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000457584	ENST00000539476		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000396463	ENST00000313486		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000396463	ENST00000539476		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000534050	ENST00000313486		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
5CDS-3UTR	ENST00000534050	ENST00000539476		TCGA	LD	SARC	TCGA-DX-A48L-01A	WRAP53	chr17	7593019	+	PITPNA	chr17	1421325	-
intron-5UTR	ENST00000552951	ENST00000547153		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-5UTR	ENST00000552951	ENST00000299045		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-5UTR	ENST00000552951	ENST00000546625		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-intron	ENST00000552951	ENST00000552690		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-5UTR	ENST00000280749	ENST00000547153		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-5UTR	ENST00000280749	ENST00000299045		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-5UTR	ENST00000280749	ENST00000546625		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
intron-intron	ENST00000280749	ENST00000552690		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
3UTR-5UTR	ENST00000548583	ENST00000547153		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
3UTR-5UTR	ENST00000548583	ENST00000299045		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
3UTR-5UTR	ENST00000548583	ENST00000546625		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
3UTR-intron	ENST00000548583	ENST00000552690		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105389804	+	TCP11L2	chr12	106704819	+
Frame-shit	ENST00000552951	ENST00000525566		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000429002		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000503506		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000526691		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000388854		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000354940		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000526390		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000529546		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000540716		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000524698		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000542918		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000378070		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000397736		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000427956		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
Frame-shit	ENST00000552951	ENST00000526950		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
5CDS-intron	ENST00000552951	ENST00000526006		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000525566		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000429002		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000503506		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000526691		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000388854		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000354940		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000526390		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000529546		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000540716		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000524698		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000542918		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000378070		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000397736		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000427956		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000280749	ENST00000526950		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-intron	ENST00000280749	ENST00000526006		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000525566		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000429002		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000503506		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000526691		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000388854		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000354940		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000526390		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000529546		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000540716		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000524698		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000542918		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000378070		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000397736		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000427956		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-3CDS	ENST00000548583	ENST00000526950		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
intron-intron	ENST00000548583	ENST00000526006		TCGA	LD	SARC	TCGA-DX-A48N-01A	C12orf45	chr12	105385626	+	TXNRD1	chr12	104721293	+
5CDS-intron	ENST00000256151	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
5CDS-intron	ENST00000256151	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
5CDS-intron	ENST00000256151	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
5CDS-intron	ENST00000256151	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
5CDS-intron	ENST00000256151	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
intron-intron	ENST00000548126	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
intron-intron	ENST00000548126	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
intron-intron	ENST00000548126	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
intron-intron	ENST00000548126	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
intron-intron	ENST00000548126	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	CCDC59	chr12	82752002	-	CHST11	chr12	105150727	+
5UTR-3CDS	ENST00000229195	ENST00000541509		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
5UTR-3CDS	ENST00000229195	ENST00000265382		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
5UTR-intron	ENST00000229195	ENST00000474356		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
5UTR-3CDS	ENST00000418359	ENST00000541509		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
5UTR-3CDS	ENST00000418359	ENST00000265382		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
5UTR-intron	ENST00000418359	ENST00000474356		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
intron-3CDS	ENST00000548230	ENST00000541509		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
intron-3CDS	ENST00000548230	ENST00000265382		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
intron-intron	ENST00000548230	ENST00000474356		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
intron-3CDS	ENST00000551483	ENST00000541509		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
intron-3CDS	ENST00000551483	ENST00000265382		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
intron-intron	ENST00000551483	ENST00000474356		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70637260	+	PIP5K1B	chr9	71478753	+
In-frame	ENST00000229195	ENST00000377044		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
In-frame	ENST00000229195	ENST00000377066		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
5CDS-5UTR	ENST00000229195	ENST00000396272		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
In-frame	ENST00000418359	ENST00000377044		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
In-frame	ENST00000418359	ENST00000377066		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
5CDS-5UTR	ENST00000418359	ENST00000396272		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
intron-3CDS	ENST00000548230	ENST00000377044		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
intron-3CDS	ENST00000548230	ENST00000377066		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
intron-5UTR	ENST00000548230	ENST00000396272		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
intron-3CDS	ENST00000551483	ENST00000377044		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
intron-3CDS	ENST00000551483	ENST00000377066		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
intron-5UTR	ENST00000551483	ENST00000396272		TCGA	LD	SARC	TCGA-DX-A48N-01A	CNOT2	chr12	70704797	+	TMEM2	chr9	74319719	-
Frame-shit	ENST00000304636	ENST00000544301		TCGA	LD	SARC	TCGA-DX-A48N-01A	COL3A1	chr2	189872868	+	VIM	chr10	17278293	+
Frame-shit	ENST00000304636	ENST00000224237		TCGA	LD	SARC	TCGA-DX-A48N-01A	COL3A1	chr2	189872868	+	VIM	chr10	17278293	+
5CDS-intron	ENST00000304636	ENST00000485947		TCGA	LD	SARC	TCGA-DX-A48N-01A	COL3A1	chr2	189872868	+	VIM	chr10	17278293	+
Frame-shit	ENST00000317840	ENST00000544301		TCGA	LD	SARC	TCGA-DX-A48N-01A	COL3A1	chr2	189872868	+	VIM	chr10	17278293	+
Frame-shit	ENST00000317840	ENST00000224237		TCGA	LD	SARC	TCGA-DX-A48N-01A	COL3A1	chr2	189872868	+	VIM	chr10	17278293	+
5CDS-intron	ENST00000317840	ENST00000485947		TCGA	LD	SARC	TCGA-DX-A48N-01A	COL3A1	chr2	189872868	+	VIM	chr10	17278293	+
5CDS-5UTR	ENST00000318130	ENST00000360204		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000318130	ENST00000594534		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000318130	ENST00000344519		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000318130	ENST00000425625		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000367512	ENST00000360204		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000367512	ENST00000594534		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000367512	ENST00000344519		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5CDS-5UTR	ENST00000367512	ENST00000425625		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
intron-5UTR	ENST00000466392	ENST00000360204		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
intron-5UTR	ENST00000466392	ENST00000594534		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
intron-5UTR	ENST00000466392	ENST00000344519		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
intron-5UTR	ENST00000466392	ENST00000425625		TCGA	LD	SARC	TCGA-DX-A48N-01A	EDEM3	chr1	184703665	-	ZNF66	chr19	20975318	+
5UTR-5UTR	ENST00000515037	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5UTR-5UTR	ENST00000515037	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5UTR-intron	ENST00000515037	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5UTR-5UTR	ENST00000515037	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000358869	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000358869	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000358869	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000358869	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000513966	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000513966	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
intron-intron	ENST00000513966	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000513966	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A48N-01A	FAM114A1	chr4	38893451	+	FRS2	chr12	69924645	+
5UTR-3CDS	ENST00000368917	ENST00000552951		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
5UTR-intron	ENST00000368917	ENST00000280749		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
5UTR-intron	ENST00000368917	ENST00000548583		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
5UTR-3CDS	ENST00000368918	ENST00000552951		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
5UTR-intron	ENST00000368918	ENST00000280749		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
5UTR-intron	ENST00000368918	ENST00000548583		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
intron-3CDS	ENST00000368916	ENST00000552951		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
intron-intron	ENST00000368916	ENST00000280749		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
intron-intron	ENST00000368916	ENST00000548583		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
intron-3CDS	ENST00000467551	ENST00000552951		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
intron-intron	ENST00000467551	ENST00000280749		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
intron-intron	ENST00000467551	ENST00000548583		TCGA	LD	SARC	TCGA-DX-A48N-01A	GABPB2	chr1	151043410	+	C12orf45	chr12	105385490	+
In-frame	ENST00000462284	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000462284	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000462284	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000356290	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000356290	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000356290	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000540827	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000540827	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000540827	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000258149	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000258149	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000258149	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000428863	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000428863	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000428863	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000393412	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000393412	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000393412	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000258148	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000258148	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000258148	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000544561	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000544561	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000544561	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000393410	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000393410	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000393410	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000393413	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000393413	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000393413	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000517852	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000517852	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000517852	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000545204	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000545204	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000545204	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000350057	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000350057	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000350057	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000360430	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000360430	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000360430	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000299252	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000299252	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
5CDS-3UTR	ENST00000299252	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000348801	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000348801	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000348801	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000478070	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000478070	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000478070	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000544125	ENST00000228347		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3CDS	ENST00000544125	ENST00000539066		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
intron-3UTR	ENST00000544125	ENST00000549195		TCGA	LD	SARC	TCGA-DX-A48N-01A	MDM2	chr12	69230529	+	POLR3B	chr12	106820975	+
In-frame	ENST00000248306	ENST00000348959		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
In-frame	ENST00000248306	ENST00000261173		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
In-frame	ENST00000248306	ENST00000359142		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
In-frame	ENST00000248306	ENST00000428670		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
In-frame	ENST00000248306	ENST00000393164		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
3UTR-3CDS	ENST00000547357	ENST00000348959		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
3UTR-3CDS	ENST00000547357	ENST00000261173		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
3UTR-3CDS	ENST00000547357	ENST00000359142		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
3UTR-3CDS	ENST00000547357	ENST00000428670		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
3UTR-3CDS	ENST00000547357	ENST00000393164		TCGA	LD	SARC	TCGA-DX-A48N-01A	METTL25	chr12	82793173	+	ATP2B1	chr12	90005149	-
In-frame	ENST00000536525	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000536525	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000536525	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000536525	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
5CDS-intron	ENST00000536525	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000397909	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000397909	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000397909	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000397909	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
5CDS-intron	ENST00000397909	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000228327	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000228327	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000228327	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000228327	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
5CDS-intron	ENST00000228327	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000266692	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000266692	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
Frame-shit	ENST00000266692	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000266692	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
5CDS-intron	ENST00000266692	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000552300	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000552300	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000552300	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000552300	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-intron	ENST00000552300	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000541270	ENST00000547956		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000541270	ENST00000549260		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000541270	ENST00000303694		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-3CDS	ENST00000541270	ENST00000546689		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
intron-intron	ENST00000541270	ENST00000550711		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78225484	+	CHST11	chr12	104995684	+
In-frame	ENST00000536525	ENST00000304685		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000536525	ENST00000536277		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000536525	ENST00000360851		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000536525	ENST00000539189		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000397909	ENST00000304685		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000397909	ENST00000536277		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000397909	ENST00000360851		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000397909	ENST00000539189		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000228327	ENST00000304685		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000228327	ENST00000536277		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000228327	ENST00000360851		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000228327	ENST00000539189		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000266692	ENST00000304685		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000266692	ENST00000536277		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000266692	ENST00000360851		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
In-frame	ENST00000266692	ENST00000539189		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000552300	ENST00000304685		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000552300	ENST00000536277		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000552300	ENST00000360851		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000552300	ENST00000539189		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000541270	ENST00000304685		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000541270	ENST00000536277		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000541270	ENST00000360851		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
intron-3CDS	ENST00000541270	ENST00000539189		TCGA	LD	SARC	TCGA-DX-A48N-01A	NAV3	chr12	78583999	+	RGL1	chr1	183816700	+
Frame-shit	ENST00000541509	ENST00000398073		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000541509	ENST00000548823		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
5CDS-5UTR	ENST00000541509	ENST00000547701		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000265382	ENST00000398073		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000265382	ENST00000548823		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
5CDS-5UTR	ENST00000265382	ENST00000547701		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
intron-3CDS	ENST00000474356	ENST00000398073		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
intron-3CDS	ENST00000474356	ENST00000548823		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
intron-5UTR	ENST00000474356	ENST00000547701		TCGA	LD	SARC	TCGA-DX-A48N-01A	PIP5K1B	chr9	71491710	+	CTDSP2	chr12	58223379	-
Frame-shit	ENST00000367510	ENST00000358155		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367510	ENST00000367733		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367510	ENST00000355305		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367510	ENST00000367731		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367510	ENST00000520906		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000367509	ENST00000358155		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000367509	ENST00000367733		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000367509	ENST00000355305		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000367509	ENST00000367731		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000367509	ENST00000520906		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185062408	+	DNM3	chr1	171956796	+
In-frame	ENST00000367510	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
In-frame	ENST00000367510	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367510	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367510	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367510	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367510	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
In-frame	ENST00000367509	ENST00000283228		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
In-frame	ENST00000367509	ENST00000440835		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367509	ENST00000537619		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367509	ENST00000378778		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367509	ENST00000342084		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000367509	ENST00000549308		TCGA	LD	SARC	TCGA-DX-A48N-01A	RNF2	chr1	185069094	+	PTPRR	chr12	71056385	-
In-frame	ENST00000398004	ENST00000392636		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
5CDS-3UTR	ENST00000398004	ENST00000413681		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
5CDS-intron	ENST00000398004	ENST00000549590		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
5CDS-intron	ENST00000398004	ENST00000455480		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
5CDS-intron	ENST00000398004	ENST00000313698		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
intron-3CDS	ENST00000538043	ENST00000392636		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
intron-3UTR	ENST00000538043	ENST00000413681		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
intron-intron	ENST00000538043	ENST00000549590		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
intron-intron	ENST00000538043	ENST00000455480		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
intron-intron	ENST00000538043	ENST00000313698		TCGA	LD	SARC	TCGA-DX-A48N-01A	SLC35E3	chr12	69140559	+	ACAD10	chr12	112184853	+
5UTR-3CDS	ENST00000358026	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000358026	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000358026	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-5UTR	ENST00000358026	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000344626	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000344626	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000344626	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-5UTR	ENST00000344626	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000429416	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000429416	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000429416	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-5UTR	ENST00000429416	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000541122	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000541122	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000541122	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-5UTR	ENST00000541122	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000589677	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000589677	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000589677	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-5UTR	ENST00000589677	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000444061	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000444061	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-3CDS	ENST00000444061	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
5UTR-5UTR	ENST00000444061	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000590574	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000590574	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000590574	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-5UTR	ENST00000590574	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000413806	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000413806	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000413806	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-5UTR	ENST00000413806	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000450717	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000450717	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000450717	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-5UTR	ENST00000450717	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000538456	ENST00000263377		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000538456	ENST00000371835		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-3CDS	ENST00000538456	ENST00000360016		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
intron-5UTR	ENST00000538456	ENST00000602230		TCGA	LD	SARC	TCGA-DX-A48N-01A	SMARCA4	chr19	11071850	+	BRD4	chr19	15367984	-
In-frame	ENST00000367501	ENST00000546159		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367501	ENST00000486375		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367501	ENST00000367521		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367501	ENST00000361927		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367501	ENST00000367520		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
In-frame	ENST00000367500	ENST00000546159		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367500	ENST00000486375		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367500	ENST00000367521		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367500	ENST00000361927		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5CDS-intron	ENST00000367500	ENST00000367520		TCGA	LD	SARC	TCGA-DX-A48N-01A	SWT1	chr1	185200840	+	COLGALT2	chr1	183947654	-
5UTR-3CDS	ENST00000377044	ENST00000377110		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-3CDS	ENST00000377044	ENST00000377111		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000377105		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000377106		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000360823		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000357533		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000396285		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000358082		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000396292		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000408909		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000396280		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000423814		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000377101		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000396283		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000361823		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377044	ENST00000377097		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377044	ENST00000437699		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-3CDS	ENST00000377066	ENST00000377110		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-3CDS	ENST00000377066	ENST00000377111		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000377105		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000377106		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000360823		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000357533		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000396285		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000358082		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000396292		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000408909		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000396280		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000423814		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000377101		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000396283		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000361823		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-intron	ENST00000377066	ENST00000377097		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
5UTR-5UTR	ENST00000377066	ENST00000437699		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-3CDS	ENST00000396272	ENST00000377110		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-3CDS	ENST00000396272	ENST00000377111		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000377105		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000377106		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000360823		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000357533		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000396285		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000358082		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000396292		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000408909		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000396280		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000423814		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000377101		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000396283		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000361823		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-intron	ENST00000396272	ENST00000377097		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-5UTR	ENST00000396272	ENST00000437699		TCGA	LD	SARC	TCGA-DX-A48N-01A	TMEM2	chr9	74383273	-	TRPM3	chr9	73479427	-
intron-3CDS	ENST00000596302	ENST00000539652		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000596302	ENST00000556010		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000596302	ENST00000358230		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000596302	ENST00000544599		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000596302	ENST00000286424		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000596302	ENST00000398033		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000596302	ENST00000542724		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000596302	ENST00000535812		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000392288	ENST00000539652		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000392288	ENST00000556010		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000392288	ENST00000358230		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000392288	ENST00000544599		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000392288	ENST00000286424		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000392288	ENST00000398033		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000392288	ENST00000542724		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000392288	ENST00000535812		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-3CDS	ENST00000594390	ENST00000539652		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-3CDS	ENST00000594390	ENST00000556010		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-3CDS	ENST00000594390	ENST00000358230		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-5UTR	ENST00000594390	ENST00000544599		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-5UTR	ENST00000594390	ENST00000286424		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-5UTR	ENST00000594390	ENST00000398033		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-intron	ENST00000594390	ENST00000542724		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
3UTR-intron	ENST00000594390	ENST00000535812		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000355504	ENST00000539652		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000355504	ENST00000556010		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000355504	ENST00000358230		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000355504	ENST00000544599		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000355504	ENST00000286424		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000355504	ENST00000398033		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000355504	ENST00000542724		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000355504	ENST00000535812		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000339914	ENST00000539652		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000339914	ENST00000556010		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000339914	ENST00000358230		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000339914	ENST00000544599		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000339914	ENST00000286424		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000339914	ENST00000398033		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000339914	ENST00000542724		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000339914	ENST00000535812		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000599461	ENST00000539652		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000599461	ENST00000556010		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-3CDS	ENST00000599461	ENST00000358230		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000599461	ENST00000544599		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000599461	ENST00000286424		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-5UTR	ENST00000599461	ENST00000398033		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000599461	ENST00000542724		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
intron-intron	ENST00000599461	ENST00000535812		TCGA	LD	SARC	TCGA-DX-A48N-01A	ZNF493	chr19	21596451	+	TMBIM4	chr12	66547228	-
Frame-shit	ENST00000261207	ENST00000381638		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
5CDS-5UTR	ENST00000261207	ENST00000574474		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
In-frame	ENST00000450142	ENST00000381638		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
5CDS-5UTR	ENST00000450142	ENST00000574474		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
Frame-shit	ENST00000437004	ENST00000381638		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
5CDS-5UTR	ENST00000437004	ENST00000574474		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
Frame-shit	ENST00000546369	ENST00000381638		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
5CDS-5UTR	ENST00000546369	ENST00000574474		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
In-frame	ENST00000550107	ENST00000381638		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
5CDS-5UTR	ENST00000550107	ENST00000574474		TCGA	LD	SARC	TCGA-DX-A48P-01A	PPP1R12A	chr12	80214554	-	ZZEF1	chr17	4020460	-
In-frame	ENST00000342679	ENST00000307767		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000342679	ENST00000574226		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000342679	ENST00000476139		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000342679	ENST00000581733		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
intron-3CDS	ENST00000534743	ENST00000307767		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
intron-3CDS	ENST00000534743	ENST00000574226		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
intron-3CDS	ENST00000534743	ENST00000476139		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
intron-3CDS	ENST00000534743	ENST00000581733		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000361818	ENST00000307767		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000361818	ENST00000574226		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000361818	ENST00000476139		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000361818	ENST00000581733		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000316920	ENST00000307767		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000316920	ENST00000574226		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000316920	ENST00000476139		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
In-frame	ENST00000316920	ENST00000581733		TCGA	LD	SARC	TCGA-DX-A48R-01A	MAP2K3	chr17	21203970	+	TVP23B	chr17	18700892	+
Frame-shit	ENST00000317276	ENST00000380262		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
In-frame	ENST00000317276	ENST00000563694		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000317276	ENST00000380255		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000317276	ENST00000565740		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
Frame-shit	ENST00000581082	ENST00000380262		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
In-frame	ENST00000581082	ENST00000563694		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000581082	ENST00000380255		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000581082	ENST00000565740		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5UTR-3CDS	ENST00000578089	ENST00000380262		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5UTR-3CDS	ENST00000578089	ENST00000563694		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5UTR-3UTR	ENST00000578089	ENST00000380255		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5UTR-3UTR	ENST00000578089	ENST00000565740		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
Frame-shit	ENST00000354903	ENST00000380262		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
In-frame	ENST00000354903	ENST00000563694		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000354903	ENST00000380255		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
5CDS-3UTR	ENST00000354903	ENST00000565740		TCGA	LD	SARC	TCGA-DX-A48R-01A	PER1	chr17	8049276	-	CNTROB	chr17	7852703	+
3UTR-3CDS	ENST00000592666	ENST00000159111		TCGA	LD	SARC	TCGA-DX-A48R-01A	UHRF1	chr19	4951008	+	KDM4B	chr19	5077378	+
3UTR-3CDS	ENST00000592666	ENST00000381759		TCGA	LD	SARC	TCGA-DX-A48R-01A	UHRF1	chr19	4951008	+	KDM4B	chr19	5077378	+
3UTR-3CDS	ENST00000592666	ENST00000536461		TCGA	LD	SARC	TCGA-DX-A48R-01A	UHRF1	chr19	4951008	+	KDM4B	chr19	5077378	+
3UTR-3UTR	ENST00000592666	ENST00000592175		TCGA	LD	SARC	TCGA-DX-A48R-01A	UHRF1	chr19	4951008	+	KDM4B	chr19	5077378	+
Frame-shit	ENST00000536774	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000536774	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000327441	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000327441	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000539062	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000539062	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000556451	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000556451	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000396294	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000396294	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000545536	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000545536	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000537471	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000537471	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
intron-3CDS	ENST00000539174	ENST00000357085		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
intron-3CDS	ENST00000539174	ENST00000349458		TCGA	LD	SARC	TCGA-DX-A48U-01A	MIPOL1	chr14	37892154	+	TRIM38	chr6	25972097	+
Frame-shit	ENST00000331920	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000331920	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000331920	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
In-frame	ENST00000418258	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
In-frame	ENST00000418258	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000418258	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000421141	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000421141	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000421141	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000437951	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000437951	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000437951	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
In-frame	ENST00000430669	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
In-frame	ENST00000430669	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000430669	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000429896	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000429896	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000429896	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000375274	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000375274	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
5CDS-intron	ENST00000375274	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000548379	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000548379	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000548379	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000468211	ENST00000288398		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-3CDS	ENST00000468211	ENST00000358278		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000560445		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000403994		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000357980		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000559556		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000559397		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000267996		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000334895		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000404484		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000560959		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000559281		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
intron-intron	ENST00000468211	ENST00000317516		TCGA	LD	SARC	TCGA-DX-A6B9-01A	PTCH1	chr9	98224138	-	TPM1	chr15	63349184	+
Frame-shit	ENST00000304863	ENST00000335523		TCGA	LD	SARC	TCGA-DX-A6B9-01A	UQCRFS1	chr19	29703812	-	VSTM2B	chr19	30054753	+
5CDS-intron	ENST00000262061	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000262061	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000549043	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552218	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000553231	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000552362	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000455864	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5UTR-intron	ENST00000416254	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000549116	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
5CDS-intron	ENST00000551779	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548281	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000553804		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000257879		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000347027		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000452168		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000394229		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000257880		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000394230		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
intron-intron	ENST00000548753	ENST00000555728		TCGA	LD	SARC	TCGA-DX-A6BE-01A	COPZ1	chr12	54718965	+	ITGA7	chr12	56105918	-
In-frame	ENST00000545128	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
In-frame	ENST00000545128	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000545128	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000545128	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000545128	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000545128	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000545128	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000545128	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-intron	ENST00000545128	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
In-frame	ENST00000376767	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
In-frame	ENST00000376767	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376767	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376767	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376767	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376767	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376767	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376767	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-intron	ENST00000376767	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
In-frame	ENST00000376752	ENST00000247833		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
In-frame	ENST00000376752	ENST00000378815		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376752	ENST00000325555		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376752	ENST00000483530		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376752	ENST00000550536		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376752	ENST00000362025		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376752	ENST00000551641		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-5UTR	ENST00000376752	ENST00000553099		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
5CDS-intron	ENST00000376752	ENST00000550847		TCGA	LD	SARC	TCGA-DX-A6BE-01A	PCSK5	chr9	78506289	+	RAB3IP	chr12	70178500	+
intron-5UTR	ENST00000293648	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000293648	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000293648	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000448622	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000448622	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000448622	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000453372	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000453372	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000453372	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000541032	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000541032	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000541032	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000590155	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000590155	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000590155	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000453792	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000453792	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000453792	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000537617	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000537617	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000537617	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000587392	ENST00000262715		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-5UTR	ENST00000587392	ENST00000556935		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-intron	ENST00000587392	ENST00000545983		TCGA	LD	SARC	TCGA-DX-A6BE-01A	ZNF562	chr19	9785308	-	TEP1	chr14	20876622	-
intron-3CDS	ENST00000535787	ENST00000220763		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
intron-intron	ENST00000535787	ENST00000529551		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
In-frame	ENST00000241416	ENST00000220763		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
5CDS-intron	ENST00000241416	ENST00000529551		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
In-frame	ENST00000404590	ENST00000220763		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
5CDS-intron	ENST00000404590	ENST00000529551		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
intron-3CDS	ENST00000495775	ENST00000220763		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
intron-intron	ENST00000495775	ENST00000529551		TCGA	LD	SARC	TCGA-DX-A6BF-01A	ACVR2A	chr2	148602776	+	CPQ	chr8	97847201	+
3UTR-3CDS	ENST00000344096	ENST00000550433		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000548513		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000549446		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000298972		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000341669		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000350228		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000540018		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000344096	ENST00000393288		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-intron	ENST00000344096	ENST00000548243		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000550433		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000548513		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000549446		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000298972		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000341669		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000350228		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000540018		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-3CDS	ENST00000393555	ENST00000393288		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
3UTR-intron	ENST00000393555	ENST00000548243		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000550433		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000548513		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000549446		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000298972		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000341669		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000350228		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000540018		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000537632	ENST00000393288		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000537632	ENST00000548243		TCGA	LD	SARC	TCGA-DX-A6BF-01A	DYRK2	chr12	68052631	+	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000550433		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000548513		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000549446		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000298972		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000341669		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000350228		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000540018		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000229214	ENST00000393288		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000229214	ENST00000548243		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000550433		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000548513		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000549446		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000298972		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000341669		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000350228		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000540018		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
In-frame	ENST00000438169	ENST00000393288		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000438169	ENST00000548243		TCGA	LD	SARC	TCGA-DX-A6BF-01A	KRR1	chr12	75900562	-	KCNC2	chr12	75445097	-
5CDS-5UTR	ENST00000379141	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000379141	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-intron	ENST00000379141	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000379141	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000320743	ENST00000299293		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000320743	ENST00000549921		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-intron	ENST00000320743	ENST00000550389		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000320743	ENST00000397997		TCGA	LD	SARC	TCGA-DX-A6BF-01A	LRIG3	chr12	59307763	-	FRS2	chr12	69924645	+
Frame-shit	ENST00000552032	ENST00000331471		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000488961		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000330891		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000553096		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000476098		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000266661		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000551160		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000393365		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000552032	ENST00000533674		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
Frame-shit	ENST00000547771	ENST00000331471		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000488961		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000330891		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000553096		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000476098		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000266661		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000551160		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000393365		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5CDS-intron	ENST00000547771	ENST00000533674		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-3CDS	ENST00000299350	ENST00000331471		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000488961		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000330891		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000553096		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000476098		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000266661		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000551160		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000393365		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000299350	ENST00000533674		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-3CDS	ENST00000535034	ENST00000331471		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000488961		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000330891		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000553096		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000476098		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000266661		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000551160		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000393365		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
intron-intron	ENST00000535034	ENST00000533674		TCGA	LD	SARC	TCGA-DX-A6BF-01A	MYRFL	chr12	70249150	+	BEST3	chr12	70037567	-
5UTR-intron	ENST00000229195	ENST00000561030		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
5UTR-5UTR	ENST00000229195	ENST00000567605		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
5UTR-intron	ENST00000229195	ENST00000355300		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
5UTR-intron	ENST00000418359	ENST00000561030		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
5UTR-5UTR	ENST00000418359	ENST00000567605		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
5UTR-intron	ENST00000418359	ENST00000355300		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
intron-intron	ENST00000548230	ENST00000561030		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
intron-5UTR	ENST00000548230	ENST00000567605		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
intron-intron	ENST00000548230	ENST00000355300		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
intron-intron	ENST00000551483	ENST00000561030		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
intron-5UTR	ENST00000551483	ENST00000567605		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
intron-intron	ENST00000551483	ENST00000355300		TCGA	LD	SARC	TCGA-DX-A6BG-01A	CNOT2	chr12	70637260	+	LINGO1	chr15	78027395	-
5CDS-5UTR	ENST00000367843	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000367843	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000367843	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000367843	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-5UTR	ENST00000432587	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000432587	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000432587	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000432587	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-5UTR	ENST00000312263	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000312263	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000312263	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000312263	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-5UTR	ENST00000367840	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000367840	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000367840	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5CDS-intron	ENST00000367840	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
3UTR-5UTR	ENST00000470919	ENST00000484368		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
3UTR-intron	ENST00000470919	ENST00000344529		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
3UTR-intron	ENST00000470919	ENST00000367728		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
3UTR-intron	ENST00000470919	ENST00000258324		TCGA	LD	SARC	TCGA-DX-A6BG-01A	DCAF6	chr1	167956846	+	PIGC	chr1	172363550	-
5UTR-3CDS	ENST00000299293	ENST00000378743		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000299293	ENST00000548100		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000299293	ENST00000552037		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000299293	ENST00000549407		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-3CDS	ENST00000549921	ENST00000378743		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000549921	ENST00000548100		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000549921	ENST00000552037		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000549921	ENST00000549407		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
intron-3CDS	ENST00000550389	ENST00000378743		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000550389	ENST00000548100		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000550389	ENST00000552037		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
intron-intron	ENST00000550389	ENST00000549407		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-3CDS	ENST00000397997	ENST00000378743		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000397997	ENST00000548100		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000397997	ENST00000552037		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5UTR-intron	ENST00000397997	ENST00000549407		TCGA	LD	SARC	TCGA-DX-A6BG-01A	FRS2	chr12	69925836	+	ZFC3H1	chr12	72005667	-
5CDS-5UTR	ENST00000248306	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000248306	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
5CDS-5UTR	ENST00000248306	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
5CDS-intron	ENST00000248306	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
3UTR-5UTR	ENST00000547357	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
3UTR-5UTR	ENST00000547357	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
3UTR-5UTR	ENST00000547357	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
3UTR-intron	ENST00000547357	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BG-01A	METTL25	chr12	82850599	+	CPM	chr12	69326620	-
In-frame	ENST00000367846	ENST00000358155		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000367846	ENST00000367733		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000367846	ENST00000355305		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000367846	ENST00000367731		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000367846	ENST00000520906		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
Frame-shit	ENST00000271373	ENST00000358155		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000271373	ENST00000367733		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000271373	ENST00000355305		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000271373	ENST00000367731		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-intron	ENST00000271373	ENST00000520906		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	DNM3	chr1	172356273	+
5CDS-5UTR	ENST00000367846	ENST00000230792		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	NUDT12	chr5	102895955	-
5CDS-5UTR	ENST00000367846	ENST00000507423		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	NUDT12	chr5	102895955	-
5CDS-intron	ENST00000367846	ENST00000515407		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	NUDT12	chr5	102895955	-
5CDS-5UTR	ENST00000271373	ENST00000230792		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	NUDT12	chr5	102895955	-
5CDS-5UTR	ENST00000271373	ENST00000507423		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	NUDT12	chr5	102895955	-
5CDS-intron	ENST00000271373	ENST00000515407		TCGA	LD	SARC	TCGA-DX-A6BG-01A	MPC2	chr1	167904971	-	NUDT12	chr5	102895955	-
intron-intron	ENST00000279907	ENST00000543727		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000279907	ENST00000550559		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000279907	ENST00000548851		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000279907	ENST00000454289		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000279907	ENST00000540550		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000279907	ENST00000323833		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000279907	ENST00000350762		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000279907	ENST00000497617		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000543727		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000550559		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000548851		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000454289		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000540550		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000323833		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000356828	ENST00000350762		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000356828	ENST00000497617		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000543727		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000550559		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000548851		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000454289		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000540550		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000323833		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-intron	ENST00000545232	ENST00000350762		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-3UTR	ENST00000545232	ENST00000497617		TCGA	LD	SARC	TCGA-DX-A6BG-01A	UHRF1BP1L	chr12	100522358	-	TSFM	chr12	58189960	+
intron-3CDS	ENST00000378743	ENST00000283249		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000378743	ENST00000485635		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000378743	ENST00000428609		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000378743	ENST00000409967		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000378743	ENST00000409872		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-3CDS	ENST00000548100	ENST00000283249		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000548100	ENST00000485635		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000548100	ENST00000428609		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000548100	ENST00000409967		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000548100	ENST00000409872		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-3CDS	ENST00000552037	ENST00000283249		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000552037	ENST00000485635		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000552037	ENST00000428609		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000552037	ENST00000409967		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000552037	ENST00000409872		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-3CDS	ENST00000549407	ENST00000283249		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000549407	ENST00000485635		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000549407	ENST00000428609		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000549407	ENST00000409967		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
intron-5UTR	ENST00000549407	ENST00000409872		TCGA	LD	SARC	TCGA-DX-A6BG-01A	ZFC3H1	chr12	72003960	-	ITGB6	chr2	160998582	-
5CDS-5UTR	ENST00000402676	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000402676	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000402676	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000402676	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000402676	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000402676	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000402676	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000402676	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000253332	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000253332	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000253332	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000253332	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000253332	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000253332	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000253332	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
5CDS-intron	ENST00000253332	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000354675	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000354675	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000354675	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000354675	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000354675	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000354675	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000354675	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000354675	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000359755	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000359755	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000359755	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000359755	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000359755	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000359755	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000359755	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000359755	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000490177	ENST00000511642		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000490177	ENST00000415497		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000490177	ENST00000372988		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-5UTR	ENST00000490177	ENST00000510503		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000490177	ENST00000511686		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000490177	ENST00000372991		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000490177	ENST00000372987		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
intron-intron	ENST00000490177	ENST00000414200		TCGA	LD	SARC	TCGA-DX-A6BH-01A	AKAP12	chr6	151561859	+	CCND3	chr6	41908323	-
In-frame	ENST00000299293	ENST00000325006		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000299293	ENST00000446544		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000299293	ENST00000531335		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000299293	ENST00000474594		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000299293	ENST00000446212		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000299293	ENST00000490911		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000299293	ENST00000472554		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000549921	ENST00000325006		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000549921	ENST00000446544		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000549921	ENST00000531335		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000549921	ENST00000474594		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000549921	ENST00000446212		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000549921	ENST00000490911		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000549921	ENST00000472554		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000550389	ENST00000325006		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000550389	ENST00000446544		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000550389	ENST00000531335		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000550389	ENST00000474594		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000550389	ENST00000446212		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000550389	ENST00000490911		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000550389	ENST00000472554		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000397997	ENST00000325006		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000397997	ENST00000446544		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000397997	ENST00000531335		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000397997	ENST00000474594		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000397997	ENST00000446212		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
In-frame	ENST00000397997	ENST00000490911		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000397997	ENST00000472554		TCGA	LD	SARC	TCGA-DX-A6BH-01A	FRS2	chr12	69967865	+	AHCYL2	chr7	129019482	+
5CDS-intron	ENST00000393561	ENST00000367781		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367780		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367779		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367782		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367775		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367776		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367777		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000333360		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393561	ENST00000367774		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367781		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367780		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367779		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367782		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367775		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367776		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367777		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000333360		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000222399	ENST00000367774		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367781		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367780		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367779		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367782		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367775		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367776		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367777		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000333360		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5CDS-intron	ENST00000393560	ENST00000367774		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367781		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367780		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367779		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367782		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367775		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367776		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367777		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000333360		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
intron-intron	ENST00000474380	ENST00000367774		TCGA	LD	SARC	TCGA-DX-A6BH-01A	LAMB1	chr7	107603350	-	SELE	chr1	169703264	-
5UTR-intron	ENST00000429150	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000429150	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000429150	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000429150	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000416623	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000416623	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000416623	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000416623	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000392309	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000392309	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000392309	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000392309	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000392307	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000392307	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000392307	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000392307	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000437412	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000437412	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000437412	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000437412	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000444202	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000444202	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000444202	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000444202	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
intron-intron	ENST00000493898	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
intron-intron	ENST00000493898	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
intron-intron	ENST00000493898	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
intron-5UTR	ENST00000493898	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000360537	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000360537	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000360537	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000360537	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000354765	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000354765	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000354765	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000354765	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000367572	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000367572	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000367572	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000367572	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000367571	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000367571	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-intron	ENST00000367571	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-5UTR	ENST00000367571	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281606	-	CPM	chr12	69351458	-
5UTR-3CDS	ENST00000429150	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000429150	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000429150	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000429150	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000416623	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000416623	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000416623	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000416623	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000392309	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000392309	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000392309	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000392309	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000392307	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000392307	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000392307	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000392307	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000437412	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000437412	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000437412	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000437412	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000444202	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000444202	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000444202	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000444202	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
intron-3CDS	ENST00000493898	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
intron-3CDS	ENST00000493898	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
intron-3CDS	ENST00000493898	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
intron-intron	ENST00000493898	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000360537	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000360537	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000360537	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000360537	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000354765	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000354765	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000354765	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000354765	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000367572	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000367572	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000367572	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000367572	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000367571	ENST00000552032		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000367571	ENST00000547771		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-3CDS	ENST00000367571	ENST00000299350		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
5UTR-intron	ENST00000367571	ENST00000535034		TCGA	LD	SARC	TCGA-DX-A6BH-01A	PLAGL1	chr6	144281610	-	MYRFL	chr12	70349143	+
Frame-shit	ENST00000450536	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A6BH-01A	REPS1	chr6	139241352	-	KCNMB4	chr12	70793989	+
Frame-shit	ENST00000367663	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A6BH-01A	REPS1	chr6	139241352	-	KCNMB4	chr12	70793989	+
Frame-shit	ENST00000409812	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A6BH-01A	REPS1	chr6	139241352	-	KCNMB4	chr12	70793989	+
Frame-shit	ENST00000258062	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A6BH-01A	REPS1	chr6	139241352	-	KCNMB4	chr12	70793989	+
Frame-shit	ENST00000415951	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A6BH-01A	REPS1	chr6	139241352	-	KCNMB4	chr12	70793989	+
intron-3CDS	ENST00000531675	ENST00000258111		TCGA	LD	SARC	TCGA-DX-A6BH-01A	REPS1	chr6	139241352	-	KCNMB4	chr12	70793989	+
In-frame	ENST00000359866	ENST00000187762		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	DDA1	chr19	17425198	+	TMEM38A	chr19	16790795	+
Frame-shit	ENST00000331203	ENST00000380149		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000331203	ENST00000448843		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000331203	ENST00000318227		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409903	ENST00000380149		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409903	ENST00000448843		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409903	ENST00000318227		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409667	ENST00000380149		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409667	ENST00000448843		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409667	ENST00000318227		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409450	ENST00000380149		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409450	ENST00000448843		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
Frame-shit	ENST00000409450	ENST00000318227		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
intron-3CDS	ENST00000472377	ENST00000380149		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
intron-3CDS	ENST00000472377	ENST00000448843		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
intron-3CDS	ENST00000472377	ENST00000318227		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	FBLN7	chr2	112942916	+	ALOXE3	chr17	8012572	-
5CDS-5UTR	ENST00000263390	ENST00000247706		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MED26	chr19	16738683	-	ABHD8	chr19	17412433	-
Frame-shit	ENST00000595618	ENST00000443236		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
5CDS-intron	ENST00000595618	ENST00000597335		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
5CDS-intron	ENST00000595618	ENST00000388925		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
Frame-shit	ENST00000594824	ENST00000443236		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
5CDS-intron	ENST00000594824	ENST00000597335		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
5CDS-intron	ENST00000594824	ENST00000388925		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
Frame-shit	ENST00000397274	ENST00000443236		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
5CDS-intron	ENST00000397274	ENST00000597335		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
5CDS-intron	ENST00000397274	ENST00000388925		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
intron-3CDS	ENST00000593411	ENST00000443236		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
intron-intron	ENST00000593411	ENST00000597335		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
intron-intron	ENST00000593411	ENST00000388925		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	MYO9B	chr19	17316961	+	CPAMD8	chr19	17091496	-
3UTR-3UTR	ENST00000578868	ENST00000532038		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000578868	ENST00000376922		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000578868	ENST00000528384		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000455881		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000532891		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000428638		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000442348		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000582826		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000528273		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000578868	ENST00000290470		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000321337	ENST00000532038		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000321337	ENST00000376922		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000321337	ENST00000528384		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000455881		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000532891		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000428638		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000442348		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000582826		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000528273		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000321337	ENST00000290470		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000429205	ENST00000532038		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000429205	ENST00000376922		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-3UTR	ENST00000429205	ENST00000528384		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000455881		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000532891		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000428638		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000442348		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000582826		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000528273		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
3UTR-intron	ENST00000429205	ENST00000290470		TCGA	LD	SARC	TCGA-DX-A6YQ-01A	SENP3	chr17	7474967	+	ARHGAP27	chr17	43472567	-
Frame-shit	ENST00000238823	ENST00000344773		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000238823	ENST00000379624		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000238823	ENST00000342045		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000238823	ENST00000379632		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000238823	ENST00000361704		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5CDS-intron	ENST00000238823	ENST00000603461		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000403368	ENST00000344773		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000403368	ENST00000379624		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000403368	ENST00000342045		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000403368	ENST00000379632		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
Frame-shit	ENST00000403368	ENST00000361704		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5CDS-intron	ENST00000403368	ENST00000603461		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000441530	ENST00000344773		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000441530	ENST00000379624		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000441530	ENST00000342045		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000441530	ENST00000379632		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000441530	ENST00000361704		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-intron	ENST00000441530	ENST00000603461		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000498340	ENST00000344773		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000498340	ENST00000379624		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000498340	ENST00000342045		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000498340	ENST00000379632		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-3CDS	ENST00000498340	ENST00000361704		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
5UTR-intron	ENST00000498340	ENST00000603461		TCGA	LD	SARC	TCGA-DX-A6YR-01A	FAM98A	chr2	33820556	-	BRE	chr2	28464190	+
In-frame	ENST00000470487	ENST00000308378		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
5CDS-intron	ENST00000470487	ENST00000476376		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
5CDS-intron	ENST00000470487	ENST00000453925		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
5CDS-intron	ENST00000470487	ENST00000479765		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
In-frame	ENST00000309027	ENST00000308378		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
5CDS-intron	ENST00000309027	ENST00000476376		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
5CDS-intron	ENST00000309027	ENST00000453925		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
5CDS-intron	ENST00000309027	ENST00000479765		TCGA	LD	SARC	TCGA-DX-A6YR-01A	GOLIM4	chr3	167812887	-	WDR49	chr3	167293939	-
Frame-shit	ENST00000359139	ENST00000415300		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000359139	ENST00000448930		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000359139	ENST00000302804		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-intron	ENST00000359139	ENST00000599062		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000359139	ENST00000598785		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
Frame-shit	ENST00000395741	ENST00000415300		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000395741	ENST00000448930		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000395741	ENST00000302804		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-intron	ENST00000395741	ENST00000599062		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000395741	ENST00000598785		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
Frame-shit	ENST00000395744	ENST00000415300		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000395744	ENST00000448930		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000395744	ENST00000302804		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-intron	ENST00000395744	ENST00000599062		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000395744	ENST00000598785		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
Frame-shit	ENST00000216061	ENST00000415300		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000216061	ENST00000448930		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000216061	ENST00000302804		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-intron	ENST00000216061	ENST00000599062		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000216061	ENST00000598785		TCGA	LD	SARC	TCGA-DX-A6YR-01A	PPP6R2	chr22	50862043	+	AURKC	chr19	57743110	+
In-frame	ENST00000397906	ENST00000332271		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
Frame-shit	ENST00000397906	ENST00000527701		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
Frame-shit	ENST00000397906	ENST00000533313		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
5CDS-5UTR	ENST00000397906	ENST00000532537		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
intron-3CDS	ENST00000490475	ENST00000332271		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
intron-3CDS	ENST00000490475	ENST00000527701		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
intron-3CDS	ENST00000490475	ENST00000533313		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
intron-5UTR	ENST00000490475	ENST00000532537		TCGA	LD	SARC	TCGA-DX-A6YR-01A	TTC28	chr22	29075610	-	PIWIL3	chr22	25115555	-
In-frame	ENST00000376395	ENST00000390649		TCGA	LD	SARC	TCGA-DX-A6YR-01A	UBQLN1	chr9	86292642	-	NLRP5	chr19	56531741	+
In-frame	ENST00000257468	ENST00000390649		TCGA	LD	SARC	TCGA-DX-A6YR-01A	UBQLN1	chr9	86292642	-	NLRP5	chr19	56531741	+
Frame-shit	ENST00000284987	ENST00000299340		TCGA	LD	SARC	TCGA-DX-A6YS-01A	ADAMTS5	chr21	28315699	-	CYYR1	chr21	27852748	-
5CDS-3UTR	ENST00000284987	ENST00000435845		TCGA	LD	SARC	TCGA-DX-A6YS-01A	ADAMTS5	chr21	28315699	-	CYYR1	chr21	27852748	-
5CDS-3UTR	ENST00000284987	ENST00000400043		TCGA	LD	SARC	TCGA-DX-A6YS-01A	ADAMTS5	chr21	28315699	-	CYYR1	chr21	27852748	-
5UTR-3CDS	ENST00000435819	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000435819	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000435819	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000435819	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000435819	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000435819	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000435819	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000309881	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000309881	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000309881	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000309881	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000309881	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000309881	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000309881	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000534394	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000534394	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000534394	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000534394	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000534394	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000534394	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000534394	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000441109	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000441109	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000441109	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000441109	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000441109	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000441109	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000441109	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000394788	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000394788	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000394788	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000394788	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000394788	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000394788	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000394788	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000447544	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000447544	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000447544	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000447544	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000447544	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000447544	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000447544	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000432207	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000432207	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000432207	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000432207	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000432207	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000432207	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000432207	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000544133	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000544133	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000544133	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000544133	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000544133	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000544133	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000544133	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000538969	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000538969	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000538969	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000538969	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000538969	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000538969	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000538969	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000433696	ENST00000341056		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000433696	ENST00000396045		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000433696	ENST00000310758		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000433696	ENST00000396040		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000433696	ENST00000442504		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000433696	ENST00000448602		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000433696	ENST00000479447		TCGA	LD	SARC	TCGA-DX-A6YS-01A	CD36	chr7	80117097	+	ELMO1	chr7	37172839	-
3UTR-3CDS	ENST00000216554	ENST00000341502		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000341749		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000557038		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000396165		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000396158		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000280083		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000556148		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000348007		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000216554	ENST00000553352		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-intron	ENST00000216554	ENST00000553383		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000341502		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000341749		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000557038		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000396165		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000396158		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000280083		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000556148		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000348007		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000558506	ENST00000553352		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-intron	ENST00000558506	ENST00000553383		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000341502		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000341749		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000557038		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000396165		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000396158		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000280083		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000556148		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000348007		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-3CDS	ENST00000560200	ENST00000553352		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
intron-intron	ENST00000560200	ENST00000553383		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000341502		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000341749		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000557038		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000396165		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000396158		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000280083		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000556148		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000348007		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-3CDS	ENST00000392715	ENST00000553352		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
3UTR-intron	ENST00000392715	ENST00000553383		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EIF5	chr14	103807462	+	CTAGE5	chr14	39796068	+
5UTR-5UTR	ENST00000358527	ENST00000373036		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
5UTR-5UTR	ENST00000358527	ENST00000468190		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
5UTR-5UTR	ENST00000372703	ENST00000373036		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
5UTR-5UTR	ENST00000372703	ENST00000468190		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
5UTR-5UTR	ENST00000296380	ENST00000373036		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
5UTR-5UTR	ENST00000296380	ENST00000468190		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
intron-5UTR	ENST00000471429	ENST00000373036		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
intron-5UTR	ENST00000471429	ENST00000468190		TCGA	LD	SARC	TCGA-DX-A6YS-01A	EXO5	chr1	40974549	+	MTF1	chr1	38323381	-
intron-intron	ENST00000531704	ENST00000461610		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
intron-5UTR	ENST00000531704	ENST00000447769		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
intron-intron	ENST00000531704	ENST00000334425		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-intron	ENST00000373383	ENST00000461610		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-5UTR	ENST00000373383	ENST00000447769		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-intron	ENST00000373383	ENST00000334425		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-intron	ENST00000373379	ENST00000461610		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-5UTR	ENST00000373379	ENST00000447769		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-intron	ENST00000373379	ENST00000334425		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-intron	ENST00000530743	ENST00000461610		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-5UTR	ENST00000530743	ENST00000447769		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
5CDS-intron	ENST00000530743	ENST00000334425		TCGA	LD	SARC	TCGA-DX-A6YS-01A	UPRT	chrX	74519731	+	GPR141	chr7	37769518	+
intron-intron	ENST00000538782	ENST00000597909		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000538782	ENST00000391781		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000538782	ENST00000600930		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000538782	ENST00000595635		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000597909		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000391781		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000600930		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
5CDS-intron	ENST00000238651	ENST00000595635		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000597909		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000391781		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000600930		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
intron-intron	ENST00000557857	ENST00000595635		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ACOT2	chr14	74036587	+	ZNF320	chr19	53385236	-
5CDS-5UTR	ENST00000261973	ENST00000381139		TCGA	LD	SARC	TCGA-DX-A6YT-01A	RBM25	chr14	73550259	+	ACOT6	chr14	74083694	+
5CDS-5UTR	ENST00000540173	ENST00000381139		TCGA	LD	SARC	TCGA-DX-A6YT-01A	RBM25	chr14	73550259	+	ACOT6	chr14	74083694	+
5CDS-5UTR	ENST00000527432	ENST00000381139		TCGA	LD	SARC	TCGA-DX-A6YT-01A	RBM25	chr14	73550259	+	ACOT6	chr14	74083694	+
5CDS-5UTR	ENST00000525321	ENST00000381139		TCGA	LD	SARC	TCGA-DX-A6YT-01A	RBM25	chr14	73550259	+	ACOT6	chr14	74083694	+
5CDS-5UTR	ENST00000526754	ENST00000381139		TCGA	LD	SARC	TCGA-DX-A6YT-01A	RBM25	chr14	73550259	+	ACOT6	chr14	74083694	+
intron-5UTR	ENST00000532483	ENST00000381139		TCGA	LD	SARC	TCGA-DX-A6YT-01A	RBM25	chr14	73550259	+	ACOT6	chr14	74083694	+
3UTR-3UTR	ENST00000505451	ENST00000515764		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ZCCHC4	chr4	25317022	+	SMIM20	chr4	25929935	+
3UTR-3UTR	ENST00000505451	ENST00000506197		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ZCCHC4	chr4	25317022	+	SMIM20	chr4	25929935	+
3UTR-intron	ENST00000505451	ENST00000514384		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ZCCHC4	chr4	25317022	+	SMIM20	chr4	25929935	+
5CDS-3UTR	ENST00000302874	ENST00000515764		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ZCCHC4	chr4	25317022	+	SMIM20	chr4	25929935	+
5CDS-3UTR	ENST00000302874	ENST00000506197		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ZCCHC4	chr4	25317022	+	SMIM20	chr4	25929935	+
5CDS-intron	ENST00000302874	ENST00000514384		TCGA	LD	SARC	TCGA-DX-A6YT-01A	ZCCHC4	chr4	25317022	+	SMIM20	chr4	25929935	+
3UTR-3CDS	ENST00000217109	ENST00000397786		TCGA	LD	SARC	TCGA-DX-A6YV-01A	CSTF1	chr20	54978854	+	MED13	chr17	60050249	-
3UTR-intron	ENST00000217109	ENST00000580896		TCGA	LD	SARC	TCGA-DX-A6YV-01A	CSTF1	chr20	54978854	+	MED13	chr17	60050249	-
3UTR-3CDS	ENST00000493039	ENST00000397786		TCGA	LD	SARC	TCGA-DX-A6YV-01A	CSTF1	chr20	54978854	+	MED13	chr17	60050249	-
3UTR-intron	ENST00000493039	ENST00000580896		TCGA	LD	SARC	TCGA-DX-A6YV-01A	CSTF1	chr20	54978854	+	MED13	chr17	60050249	-
Frame-shit	ENST00000355472	ENST00000029410		TCGA	LD	SARC	TCGA-DX-A6YV-01A	GRK6	chr5	176853898	+	B4GALT7	chr5	177034303	+
Frame-shit	ENST00000507633	ENST00000029410		TCGA	LD	SARC	TCGA-DX-A6YV-01A	GRK6	chr5	176853898	+	B4GALT7	chr5	177034303	+
Frame-shit	ENST00000393576	ENST00000029410		TCGA	LD	SARC	TCGA-DX-A6YV-01A	GRK6	chr5	176853898	+	B4GALT7	chr5	177034303	+
Frame-shit	ENST00000355958	ENST00000029410		TCGA	LD	SARC	TCGA-DX-A6YV-01A	GRK6	chr5	176853898	+	B4GALT7	chr5	177034303	+
Frame-shit	ENST00000528793	ENST00000029410		TCGA	LD	SARC	TCGA-DX-A6YV-01A	GRK6	chr5	176853898	+	B4GALT7	chr5	177034303	+
Frame-shit	ENST00000340979	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000340979	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000340979	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000340979	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000340979	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000368131	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000368131	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000368131	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000368131	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000368131	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000368132	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000368132	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000368132	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000368132	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000368132	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000295809	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000295809	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000295809	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000295809	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000295809	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-3CDS	ENST00000430894	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-3CDS	ENST00000430894	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-intron	ENST00000430894	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-intron	ENST00000430894	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-intron	ENST00000430894	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-3CDS	ENST00000359709	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-3CDS	ENST00000359709	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-intron	ENST00000359709	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-intron	ENST00000359709	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
intron-intron	ENST00000359709	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000448393	ENST00000271469		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
Frame-shit	ENST00000448393	ENST00000367926		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000448393	ENST00000476240		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000448393	ENST00000367924		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
5CDS-intron	ENST00000448393	ENST00000367925		TCGA	LD	SARC	TCGA-DX-A6YV-01A	IFI16	chr1	158986490	+	UAP1	chr1	162546567	+
In-frame	ENST00000360416	ENST00000250113		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
5CDS-intron	ENST00000360416	ENST00000573057		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
In-frame	ENST00000379980	ENST00000250113		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
5CDS-intron	ENST00000379980	ENST00000573057		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
In-frame	ENST00000396239	ENST00000250113		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
5CDS-intron	ENST00000396239	ENST00000573057		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
In-frame	ENST00000269243	ENST00000250113		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
5CDS-intron	ENST00000269243	ENST00000573057		TCGA	LD	SARC	TCGA-DX-A6YV-01A	MYH10	chr17	8390751	-	FXR2	chr17	7496212	-
intron-3CDS	ENST00000360605	ENST00000254260		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
intron-3CDS	ENST00000360605	ENST00000400226		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
intron-intron	ENST00000360605	ENST00000588683		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
Frame-shit	ENST00000542441	ENST00000254260		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
Frame-shit	ENST00000542441	ENST00000400226		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
5CDS-intron	ENST00000542441	ENST00000588683		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
5UTR-3CDS	ENST00000392271	ENST00000254260		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
5UTR-3CDS	ENST00000392271	ENST00000400226		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
5UTR-intron	ENST00000392271	ENST00000588683		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
Frame-shit	ENST00000312051	ENST00000254260		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
Frame-shit	ENST00000312051	ENST00000400226		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
5CDS-intron	ENST00000312051	ENST00000588683		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
intron-3CDS	ENST00000574176	ENST00000254260		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
intron-3CDS	ENST00000574176	ENST00000400226		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
intron-intron	ENST00000574176	ENST00000588683		TCGA	LD	SARC	TCGA-DX-A6YV-01A	URI1	chr19	30433571	+	RHPN2	chr19	33484959	-
In-frame	ENST00000356175	ENST00000325874		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
In-frame	ENST00000358273	ENST00000325874		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000431387	ENST00000325874		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000581280		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000431387	ENST00000394744		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	SARC	TCGA-DX-A6YX-01A	NF1	chr17	29576137	+	RAB11FIP4	chr17	29844669	+
intron-3CDS	ENST00000300584	ENST00000534064		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000300584	ENST00000535943		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000300584	ENST00000525931		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000300584	ENST00000529807		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000300584	ENST00000527522		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000409931	ENST00000534064		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000409931	ENST00000535943		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000409931	ENST00000525931		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000409931	ENST00000529807		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000409931	ENST00000527522		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000492078	ENST00000534064		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000492078	ENST00000535943		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000492078	ENST00000525931		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000492078	ENST00000529807		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
intron-intron	ENST00000492078	ENST00000527522		TCGA	LD	SARC	TCGA-DX-A6Z2-01A	TBC1D2B	chr15	78290537	-	INTS4	chr11	77594998	-
Frame-shit	ENST00000264935	ENST00000231021		TCGA	LD	SARC	TCGA-DX-A7EF-01A	CEP72	chr5	639339	+	CDH9	chr5	26902838	-
3UTR-3CDS	ENST00000444221	ENST00000231021		TCGA	LD	SARC	TCGA-DX-A7EF-01A	CEP72	chr5	639339	+	CDH9	chr5	26902838	-
intron-3CDS	ENST00000514507	ENST00000231021		TCGA	LD	SARC	TCGA-DX-A7EF-01A	CEP72	chr5	639339	+	CDH9	chr5	26902838	-
5UTR-3CDS	ENST00000560464	ENST00000356860		TCGA	LD	SARC	TCGA-DX-A7EF-01A	HERC2P2	chr15	23293373	+	CACNA2D1	chr7	81964567	-
5UTR-3CDS	ENST00000560464	ENST00000356253		TCGA	LD	SARC	TCGA-DX-A7EF-01A	HERC2P2	chr15	23293373	+	CACNA2D1	chr7	81964567	-
5UTR-3CDS	ENST00000560464	ENST00000423588		TCGA	LD	SARC	TCGA-DX-A7EF-01A	HERC2P2	chr15	23293373	+	CACNA2D1	chr7	81964567	-
5UTR-intron	ENST00000560464	ENST00000464354		TCGA	LD	SARC	TCGA-DX-A7EF-01A	HERC2P2	chr15	23293373	+	CACNA2D1	chr7	81964567	-
5UTR-intron	ENST00000560464	ENST00000535308		TCGA	LD	SARC	TCGA-DX-A7EF-01A	HERC2P2	chr15	23293373	+	CACNA2D1	chr7	81964567	-
5UTR-5UTR	ENST00000383314	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000383314	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-3UTR	ENST00000383314	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000592764	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-3UTR	ENST00000592764	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000262173	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-3UTR	ENST00000262173	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000591922	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-3UTR	ENST00000591922	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000543302	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-3UTR	ENST00000543302	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-5UTR	ENST00000535051	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
5UTR-3UTR	ENST00000535051	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000542191		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000261368		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000379538		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000379533		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000379536		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000261367		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000414317		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-5UTR	ENST00000589866	ENST00000503116		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
intron-3UTR	ENST00000589866	ENST00000504884		TCGA	LD	SARC	TCGA-DX-A7EF-01A	RNMT	chr18	13726728	+	SNCAIP	chr5	121776324	+
In-frame	ENST00000413465	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
Frame-shit	ENST00000413465	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
In-frame	ENST00000359597	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
Frame-shit	ENST00000359597	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
Frame-shit	ENST00000269305	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
In-frame	ENST00000269305	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
In-frame	ENST00000455263	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
Frame-shit	ENST00000455263	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
In-frame	ENST00000420246	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
Frame-shit	ENST00000420246	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
Frame-shit	ENST00000445888	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
In-frame	ENST00000445888	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
intron-3CDS	ENST00000574684	ENST00000356297		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
intron-3CDS	ENST00000574684	ENST00000543296		TCGA	LD	SARC	TCGA-DX-A7EF-01A	TP53	chr17	7577499	-	PXDNL	chr8	52567320	-
In-frame	ENST00000333972	ENST00000392302		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000333972	ENST00000368196		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000333972	ENST00000524377		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000333972	ENST00000358660		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
5CDS-intron	ENST00000333972	ENST00000531606		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000286494	ENST00000392302		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000286494	ENST00000368196		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000286494	ENST00000524377		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
In-frame	ENST00000286494	ENST00000358660		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
5CDS-intron	ENST00000286494	ENST00000531606		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
intron-3CDS	ENST00000477314	ENST00000392302		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
intron-3CDS	ENST00000477314	ENST00000368196		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
intron-3CDS	ENST00000477314	ENST00000524377		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
intron-3CDS	ENST00000477314	ENST00000358660		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
intron-intron	ENST00000477314	ENST00000531606		TCGA	LD	SARC	TCGA-DX-A7EI-01A	ARHGEF25	chr12	58008800	+	NTRK1	chr1	156841415	+
Frame-shit	ENST00000225964	ENST00000544301		TCGA	LD	SARC	TCGA-DX-A7EI-01A	COL1A1	chr17	48271491	-	VIM	chr10	17278293	+
Frame-shit	ENST00000225964	ENST00000224237		TCGA	LD	SARC	TCGA-DX-A7EI-01A	COL1A1	chr17	48271491	-	VIM	chr10	17278293	+
5CDS-intron	ENST00000225964	ENST00000485947		TCGA	LD	SARC	TCGA-DX-A7EI-01A	COL1A1	chr17	48271491	-	VIM	chr10	17278293	+
5CDS-intron	ENST00000398073	ENST00000540746		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
5CDS-intron	ENST00000398073	ENST00000544216		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
5CDS-intron	ENST00000398073	ENST00000433627		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
5CDS-intron	ENST00000548823	ENST00000540746		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
5CDS-intron	ENST00000548823	ENST00000544216		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
5CDS-intron	ENST00000548823	ENST00000433627		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
intron-intron	ENST00000547701	ENST00000540746		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
intron-intron	ENST00000547701	ENST00000544216		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
intron-intron	ENST00000547701	ENST00000433627		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	LSM14A	chr19	34699834	+
In-frame	ENST00000398073	ENST00000321196		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000398073	ENST00000548305		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000398073	ENST00000549919		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
In-frame	ENST00000548823	ENST00000321196		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000548823	ENST00000548305		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
5CDS-intron	ENST00000548823	ENST00000549919		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
intron-3CDS	ENST00000547701	ENST00000321196		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
intron-intron	ENST00000547701	ENST00000548305		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
intron-intron	ENST00000547701	ENST00000549919		TCGA	LD	SARC	TCGA-DX-A7EI-01A	CTDSP2	chr12	58240155	-	TMTC2	chr12	83525989	+
5CDS-5UTR	ENST00000322349	ENST00000424518		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5CDS-5UTR	ENST00000322349	ENST00000455246		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5CDS-intron	ENST00000322349	ENST00000425595		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5CDS-intron	ENST00000322349	ENST00000453875		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5CDS-5UTR	ENST00000322349	ENST00000439545		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5UTR-5UTR	ENST00000547833	ENST00000424518		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5UTR-5UTR	ENST00000547833	ENST00000455246		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5UTR-intron	ENST00000547833	ENST00000425595		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5UTR-intron	ENST00000547833	ENST00000453875		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5UTR-5UTR	ENST00000547833	ENST00000439545		TCGA	LD	SARC	TCGA-DX-A7EI-01A	EEA1	chr12	93322819	-	HOTAIR	chr12	54362540	-
5CDS-3UTR	ENST00000274217	ENST00000374690		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
5CDS-intron	ENST00000274217	ENST00000513847		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
5CDS-intron	ENST00000274217	ENST00000504326		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
5CDS-intron	ENST00000274217	ENST00000396044		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
5CDS-intron	ENST00000274217	ENST00000396043		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
intron-3UTR	ENST00000506258	ENST00000374690		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
intron-intron	ENST00000506258	ENST00000513847		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
intron-intron	ENST00000506258	ENST00000504326		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
intron-intron	ENST00000506258	ENST00000396044		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
intron-intron	ENST00000506258	ENST00000396043		TCGA	LD	SARC	TCGA-DX-A7EI-01A	FAM105A	chr5	14609126	+	AR	chrX	66948516	+
Frame-shit	ENST00000549982	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000549982	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000549982	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000549982	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
Frame-shit	ENST00000361630	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000361630	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000361630	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000361630	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
Frame-shit	ENST00000552217	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000552217	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000552217	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000552217	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
Frame-shit	ENST00000393128	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000393128	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000393128	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000393128	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
Frame-shit	ENST00000547098	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000547098	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000547098	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000547098	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
Frame-shit	ENST00000548545	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000548545	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000548545	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
5CDS-intron	ENST00000548545	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
intron-3CDS	ENST00000552938	ENST00000343958		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
intron-intron	ENST00000552938	ENST00000546711		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
intron-intron	ENST00000552938	ENST00000549499		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
intron-intron	ENST00000552938	ENST00000550368		TCGA	LD	SARC	TCGA-DX-A7EI-01A	MRPL42	chr12	93881436	+	FGD6	chr12	95475332	-
intron-3CDS	ENST00000367302	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367302	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367302	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-intron	ENST00000367302	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367296	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367296	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367296	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-intron	ENST00000367296	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000295624	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000295624	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000295624	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-intron	ENST00000295624	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367297	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367297	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367297	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-intron	ENST00000367297	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367300	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367300	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000367300	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-intron	ENST00000367300	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
Frame-shit	ENST00000367295	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
Frame-shit	ENST00000367295	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
Frame-shit	ENST00000367295	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
5CDS-intron	ENST00000367295	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000469130	ENST00000546373		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000469130	ENST00000551568		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000469130	ENST00000338356		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-intron	ENST00000469130	ENST00000549691		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV1	chr1	201709204	+	CPM	chr12	69279669	-
intron-3CDS	ENST00000536525	ENST00000371347		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000536525	ENST00000411689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000536525	ENST00000452689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3UTR	ENST00000536525	ENST00000604908		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000397909	ENST00000371347		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000397909	ENST00000411689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000397909	ENST00000452689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3UTR	ENST00000397909	ENST00000604908		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000228327	ENST00000371347		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000228327	ENST00000411689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000228327	ENST00000452689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3UTR	ENST00000228327	ENST00000604908		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000266692	ENST00000371347		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000266692	ENST00000411689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000266692	ENST00000452689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3UTR	ENST00000266692	ENST00000604908		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000552300	ENST00000371347		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000552300	ENST00000411689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000552300	ENST00000452689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3UTR	ENST00000552300	ENST00000604908		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000541270	ENST00000371347		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000541270	ENST00000411689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3CDS	ENST00000541270	ENST00000452689		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
intron-3UTR	ENST00000541270	ENST00000604908		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NAV3	chr12	77718994	+	SLC25A27	chr6	46636446	+
5CDS-intron	ENST00000400546	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
5CDS-5UTR	ENST00000400546	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
5CDS-intron	ENST00000284894	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
5CDS-5UTR	ENST00000284894	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
5CDS-intron	ENST00000535285	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
5CDS-5UTR	ENST00000535285	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
intron-intron	ENST00000486367	ENST00000328827		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
intron-5UTR	ENST00000486367	ENST00000547571		TCGA	LD	SARC	TCGA-DX-A7EI-01A	NCAM2	chr21	22746333	+	PAWR	chr12	80062188	-
intron-3CDS	ENST00000341744	ENST00000246554		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000341744	ENST00000592141		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000341744	ENST00000392201		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000395816	ENST00000246554		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000395816	ENST00000592141		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000395816	ENST00000392201		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000347215	ENST00000246554		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000347215	ENST00000592141		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000347215	ENST00000392201		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
5UTR-3CDS	ENST00000265626	ENST00000246554		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
5UTR-3CDS	ENST00000265626	ENST00000592141		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
5UTR-3CDS	ENST00000265626	ENST00000392201		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000395814	ENST00000246554		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000395814	ENST00000592141		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
intron-3CDS	ENST00000395814	ENST00000392201		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
5UTR-3CDS	ENST00000472841	ENST00000246554		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
5UTR-3CDS	ENST00000472841	ENST00000592141		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
5UTR-3CDS	ENST00000472841	ENST00000392201		TCGA	LD	SARC	TCGA-DX-A7EI-01A	PMEPA1	chr20	56286380	-	COX6B1	chr19	36145473	+
3UTR-3CDS	ENST00000378887	ENST00000393330		TCGA	LD	SARC	TCGA-DX-A7EI-01A	SDHAF1	chr19	36486610	+	TSPAN8	chr12	71526604	-
3UTR-3CDS	ENST00000378887	ENST00000247829		TCGA	LD	SARC	TCGA-DX-A7EI-01A	SDHAF1	chr19	36486610	+	TSPAN8	chr12	71526604	-
3UTR-3CDS	ENST00000378887	ENST00000546561		TCGA	LD	SARC	TCGA-DX-A7EI-01A	SDHAF1	chr19	36486610	+	TSPAN8	chr12	71526604	-
3UTR-3CDS	ENST00000378887	ENST00000552128		TCGA	LD	SARC	TCGA-DX-A7EI-01A	SDHAF1	chr19	36486610	+	TSPAN8	chr12	71526604	-
3UTR-intron	ENST00000378887	ENST00000552786		TCGA	LD	SARC	TCGA-DX-A7EI-01A	SDHAF1	chr19	36486610	+	TSPAN8	chr12	71526604	-
5UTR-3CDS	ENST00000366890	ENST00000366932		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000366890	ENST00000491428		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000350027	ENST00000366932		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000350027	ENST00000491428		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000352967	ENST00000366932		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000352967	ENST00000491428		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000391882	ENST00000366932		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000391882	ENST00000491428		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000543857	ENST00000366932		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000543857	ENST00000491428		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-3CDS	ENST00000465263	ENST00000366932		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
5UTR-intron	ENST00000465263	ENST00000491428		TCGA	LD	SARC	TCGA-DX-A7EI-01A	TAF1A	chr1	222763069	-	RRP15	chr1	218504290	+
intron-3CDS	ENST00000267199	ENST00000314073		TCGA	LD	SARC	TCGA-DX-A7EI-01A	VPS33A	chr12	122716873	-	GLTSCR1L	chr6	42823594	+
intron-3CDS	ENST00000267199	ENST00000394168		TCGA	LD	SARC	TCGA-DX-A7EI-01A	VPS33A	chr12	122716873	-	GLTSCR1L	chr6	42823594	+
intron-3CDS	ENST00000542310	ENST00000314073		TCGA	LD	SARC	TCGA-DX-A7EI-01A	VPS33A	chr12	122716873	-	GLTSCR1L	chr6	42823594	+
intron-3CDS	ENST00000542310	ENST00000394168		TCGA	LD	SARC	TCGA-DX-A7EI-01A	VPS33A	chr12	122716873	-	GLTSCR1L	chr6	42823594	+
intron-3CDS	ENST00000451053	ENST00000314073		TCGA	LD	SARC	TCGA-DX-A7EI-01A	VPS33A	chr12	122716873	-	GLTSCR1L	chr6	42823594	+
intron-3CDS	ENST00000451053	ENST00000394168		TCGA	LD	SARC	TCGA-DX-A7EI-01A	VPS33A	chr12	122716873	-	GLTSCR1L	chr6	42823594	+
5CDS-intron	ENST00000592533	ENST00000355537		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000592533	ENST00000590564		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000589117	ENST00000355537		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000589117	ENST00000590564		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
3UTR-intron	ENST00000587220	ENST00000355537		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
3UTR-intron	ENST00000587220	ENST00000590564		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000316433	ENST00000355537		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000316433	ENST00000590564		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000586792	ENST00000355537		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
intron-intron	ENST00000586792	ENST00000590564		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000343599	ENST00000355537		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
5CDS-intron	ENST00000343599	ENST00000590564		TCGA	LD	SARC	TCGA-DX-A7EN-01A	ZNF540	chr19	38092006	+	ZNF536	chr19	31201664	+
In-frame	ENST00000415083	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000415083	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542420	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542743	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000539849	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000269137	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000545952	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-5UTR	ENST00000585241	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7EO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000415083	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542420	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542743	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000539849	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000269137	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000545952	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000336777		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000337502		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-5UTR	ENST00000585241	ENST00000476392		TCGA	LD	SARC	TCGA-DX-A7ER-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000260128	ENST00000276603		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
In-frame	ENST00000260128	ENST00000276602		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
5CDS-intron	ENST00000260128	ENST00000520783		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
Frame-shit	ENST00000458141	ENST00000276603		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
In-frame	ENST00000458141	ENST00000276602		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
5CDS-intron	ENST00000458141	ENST00000520783		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
Frame-shit	ENST00000402687	ENST00000276603		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
In-frame	ENST00000402687	ENST00000276602		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
5CDS-intron	ENST00000402687	ENST00000520783		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
Frame-shit	ENST00000419716	ENST00000276603		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
In-frame	ENST00000419716	ENST00000276602		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
5CDS-intron	ENST00000419716	ENST00000520783		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
3UTR-3CDS	ENST00000521946	ENST00000276603		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
3UTR-3CDS	ENST00000521946	ENST00000276602		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
3UTR-intron	ENST00000521946	ENST00000520783		TCGA	LD	SARC	TCGA-DX-A7ET-01A	SULF1	chr8	70533486	+	TERF1	chr8	73958196	+
intron-intron	ENST00000476083	ENST00000378518		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-intron	ENST00000476083	ENST00000605895		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-3UTR	ENST00000476083	ENST00000378513		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-3UTR	ENST00000476083	ENST00000378512		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-3UTR	ENST00000476083	ENST00000488353		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-intron	ENST00000480186	ENST00000378518		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-intron	ENST00000480186	ENST00000605895		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000480186	ENST00000378513		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000480186	ENST00000378512		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000480186	ENST00000488353		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-intron	ENST00000377443	ENST00000378518		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-intron	ENST00000377443	ENST00000605895		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000377443	ENST00000378513		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000377443	ENST00000378512		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000377443	ENST00000488353		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-intron	ENST00000377436	ENST00000378518		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-intron	ENST00000377436	ENST00000605895		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000377436	ENST00000378513		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000377436	ENST00000378512		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
5CDS-3UTR	ENST00000377436	ENST00000488353		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-intron	ENST00000377442	ENST00000378518		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-intron	ENST00000377442	ENST00000605895		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-3UTR	ENST00000377442	ENST00000378513		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-3UTR	ENST00000377442	ENST00000378512		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
intron-3UTR	ENST00000377442	ENST00000488353		TCGA	LD	SARC	TCGA-DX-A7EU-01A	CA6	chr1	9009501	+	RER1	chr1	2334474	+
Frame-shit	ENST00000234590	ENST00000333172		TCGA	LD	SARC	TCGA-DX-A7EU-01A	ENO1	chr1	8928047	-	TAS1R1	chr1	6639102	+
5CDS-3UTR	ENST00000234590	ENST00000328191		TCGA	LD	SARC	TCGA-DX-A7EU-01A	ENO1	chr1	8928047	-	TAS1R1	chr1	6639102	+
5CDS-3UTR	ENST00000234590	ENST00000351136		TCGA	LD	SARC	TCGA-DX-A7EU-01A	ENO1	chr1	8928047	-	TAS1R1	chr1	6639102	+
Frame-shit	ENST00000523207	ENST00000327430		TCGA	LD	SARC	TCGA-DX-A7EU-01A	KCNB2	chr8	73480548	+	SALL2	chr14	21993788	-
Frame-shit	ENST00000523207	ENST00000317492		TCGA	LD	SARC	TCGA-DX-A7EU-01A	KCNB2	chr8	73480548	+	SALL2	chr14	21993788	-
Frame-shit	ENST00000523207	ENST00000538754		TCGA	LD	SARC	TCGA-DX-A7EU-01A	KCNB2	chr8	73480548	+	SALL2	chr14	21993788	-
Frame-shit	ENST00000523207	ENST00000450879		TCGA	LD	SARC	TCGA-DX-A7EU-01A	KCNB2	chr8	73480548	+	SALL2	chr14	21993788	-
intron-3CDS	ENST00000516892	ENST00000280979		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG3	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000516892	ENST00000557354		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG3	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000516892	ENST00000557272		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG3	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-intron	ENST00000516892	ENST00000554449		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG3	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000458974	ENST00000280979		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG8	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000458974	ENST00000557354		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG8	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-3CDS	ENST00000458974	ENST00000557272		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG8	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-intron	ENST00000458974	ENST00000554449		TCGA	LD	SARC	TCGA-DX-A7EU-01A	MEG8	chr14	101302637	+	AKAP6	chr14	33004760	+
intron-intron	ENST00000465357	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000465357	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-5UTR	ENST00000465357	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-intron	ENST00000539517	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-intron	ENST00000539517	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-5UTR	ENST00000539517	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-intron	ENST00000267422	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-intron	ENST00000267422	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-5UTR	ENST00000267422	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-intron	ENST00000344429	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-intron	ENST00000344429	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
5CDS-5UTR	ENST00000344429	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000547619	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000547619	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-5UTR	ENST00000547619	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000574031	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000574031	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-5UTR	ENST00000574031	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000551754	ENST00000290219		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-intron	ENST00000551754	ENST00000381995		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-5UTR	ENST00000551754	ENST00000405436		TCGA	LD	SARC	TCGA-DX-A7EU-01A	NOVA1	chr14	26941526	-	IFNGR2	chr21	34783142	+
intron-5UTR	ENST00000324350	ENST00000560741		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000324350	ENST00000306072		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000324350	ENST00000379224		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-intron	ENST00000324350	ENST00000560746		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-5UTR	ENST00000373191	ENST00000560741		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-5UTR	ENST00000373191	ENST00000306072		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-5UTR	ENST00000373191	ENST00000379224		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-intron	ENST00000373191	ENST00000560746		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000397828	ENST00000560741		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000397828	ENST00000306072		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000397828	ENST00000379224		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-intron	ENST00000397828	ENST00000560746		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-5UTR	ENST00000246314	ENST00000560741		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-5UTR	ENST00000246314	ENST00000306072		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-5UTR	ENST00000246314	ENST00000379224		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-intron	ENST00000246314	ENST00000560746		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000471099	ENST00000560741		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000471099	ENST00000306072		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-5UTR	ENST00000471099	ENST00000379224		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
intron-intron	ENST00000471099	ENST00000560746		TCGA	LD	SARC	TCGA-DX-A8BG-01A	AGO3	chr1	36475195	+	ISG20	chr15	89182574	+
5CDS-3UTR	ENST00000313056	ENST00000591658		TCGA	LD	SARC	TCGA-DX-A8BG-01A	OGFOD3	chr17	80373274	-	TTC25	chr17	40113400	+
5CDS-3UTR	ENST00000329197	ENST00000591658		TCGA	LD	SARC	TCGA-DX-A8BG-01A	OGFOD3	chr17	80373274	-	TTC25	chr17	40113400	+
intron-3UTR	ENST00000578287	ENST00000591658		TCGA	LD	SARC	TCGA-DX-A8BG-01A	OGFOD3	chr17	80373274	-	TTC25	chr17	40113400	+
5CDS-intron	ENST00000415822	ENST00000486975		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000415822	ENST00000451576		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000415822	ENST00000064724		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000415822	ENST00000489485		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000392813	ENST00000486975		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000392813	ENST00000451576		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000392813	ENST00000064724		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000392813	ENST00000489485		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000264266	ENST00000486975		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000264266	ENST00000451576		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000264266	ENST00000064724		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-intron	ENST00000264266	ENST00000489485		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	CLDN11	chr3	170472178	+
5CDS-5UTR	ENST00000415822	ENST00000359175		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	SPTSSB	chr3	161077682	-
5CDS-5UTR	ENST00000415822	ENST00000497137		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	SPTSSB	chr3	161077682	-
5CDS-5UTR	ENST00000392813	ENST00000359175		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	SPTSSB	chr3	161077682	-
5CDS-5UTR	ENST00000392813	ENST00000497137		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	SPTSSB	chr3	161077682	-
5CDS-5UTR	ENST00000264266	ENST00000359175		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	SPTSSB	chr3	161077682	-
5CDS-5UTR	ENST00000264266	ENST00000497137		TCGA	LD	SARC	TCGA-DX-A8BH-01A	MFSD1	chr3	158531856	+	SPTSSB	chr3	161077682	-
intron-3CDS	ENST00000259605	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000259605	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000259605	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-3CDS	ENST00000353739	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000353739	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000353739	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-3CDS	ENST00000357058	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000357058	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000357058	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-3CDS	ENST00000350199	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000350199	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000350199	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-3CDS	ENST00000377885	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000377885	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000377885	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-3CDS	ENST00000377877	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000377877	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000377877	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-3CDS	ENST00000491349	ENST00000311925		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000491349	ENST00000485502		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
intron-intron	ENST00000491349	ENST00000378800		TCGA	LD	SARC	TCGA-DX-A8BH-01A	RNF38	chr9	36487305	-	CCL19	chr9	34690339	-
5CDS-intron	ENST00000220325	ENST00000445791		TCGA	LD	SARC	TCGA-DX-A8BK-01A	EHD4	chr15	42264457	-	TEX41	chr2	145939771	+
5CDS-5UTR	ENST00000164640	ENST00000369484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000164640	ENST00000369479		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000393758	ENST00000369484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000393758	ENST00000369479		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000544474	ENST00000369484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
5CDS-5UTR	ENST00000544474	ENST00000369479		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000475140	ENST00000369484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
intron-5UTR	ENST00000475140	ENST00000369479		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	CMC4	chrX	154292308	-
5CDS-intron	ENST00000164640	ENST00000369476		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000164640	ENST00000482244		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000164640	ENST00000362018		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000393758	ENST00000369476		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000393758	ENST00000482244		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000393758	ENST00000362018		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000544474	ENST00000369476		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000544474	ENST00000482244		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
5CDS-intron	ENST00000544474	ENST00000362018		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000475140	ENST00000369476		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000475140	ENST00000482244		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
intron-intron	ENST00000475140	ENST00000362018		TCGA	LD	SARC	TCGA-DX-A8BK-01A	PDZD4	chrX	153095694	-	MTCP1	chrX	154292308	-
Frame-shit	ENST00000360605	ENST00000544484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000360605	ENST00000357008		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000360605	ENST00000309577		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000360605	ENST00000544040		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
5CDS-intron	ENST00000360605	ENST00000540960		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000542441	ENST00000544484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000542441	ENST00000357008		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000542441	ENST00000309577		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000542441	ENST00000544040		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
5CDS-intron	ENST00000542441	ENST00000540960		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000392271	ENST00000544484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000392271	ENST00000357008		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000392271	ENST00000309577		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000392271	ENST00000544040		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
5CDS-intron	ENST00000392271	ENST00000540960		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000312051	ENST00000544484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000312051	ENST00000357008		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000312051	ENST00000309577		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
Frame-shit	ENST00000312051	ENST00000544040		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
5CDS-intron	ENST00000312051	ENST00000540960		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
intron-3CDS	ENST00000574176	ENST00000544484		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
intron-3CDS	ENST00000574176	ENST00000357008		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
intron-3CDS	ENST00000574176	ENST00000309577		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
intron-3CDS	ENST00000574176	ENST00000544040		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
intron-intron	ENST00000574176	ENST00000540960		TCGA	LD	SARC	TCGA-DX-A8BK-01A	URI1	chr19	30477324	+	CHD4	chr12	6682435	-
5UTR-intron	ENST00000263620	ENST00000303657		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
5UTR-intron	ENST00000263620	ENST00000359161		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
5UTR-intron	ENST00000263620	ENST00000592546		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
5UTR-intron	ENST00000263620	ENST00000587700		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
3UTR-intron	ENST00000592216	ENST00000303657		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
3UTR-intron	ENST00000592216	ENST00000359161		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
3UTR-intron	ENST00000592216	ENST00000592546		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
3UTR-intron	ENST00000592216	ENST00000587700		TCGA	LD	SARC	TCGA-DX-A8BL-01A	ARID3A	chr19	929277	+	RFX2	chr19	6093958	-
3UTR-5UTR	ENST00000490386	ENST00000441964		TCGA	LD	SARC	TCGA-DX-A8BL-01A	CLEC3B	chr3	45072417	+	POMGNT2	chr3	43123028	-
3UTR-5UTR	ENST00000490386	ENST00000344697		TCGA	LD	SARC	TCGA-DX-A8BL-01A	CLEC3B	chr3	45072417	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000296130	ENST00000441964		TCGA	LD	SARC	TCGA-DX-A8BL-01A	CLEC3B	chr3	45072417	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000296130	ENST00000344697		TCGA	LD	SARC	TCGA-DX-A8BL-01A	CLEC3B	chr3	45072417	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000428034	ENST00000441964		TCGA	LD	SARC	TCGA-DX-A8BL-01A	CLEC3B	chr3	45072417	+	POMGNT2	chr3	43123028	-
5CDS-5UTR	ENST00000428034	ENST00000344697		TCGA	LD	SARC	TCGA-DX-A8BL-01A	CLEC3B	chr3	45072417	+	POMGNT2	chr3	43123028	-
intron-5UTR	ENST00000252577	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000252577	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000252577	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000360315	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000360315	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000537887	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000537887	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000404158	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000404158	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000358713	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000358713	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000429563	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000429563	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000540691		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000539106		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000222307		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-intron	ENST00000473184	ENST00000600796		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000601630		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000599000		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000595073		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000599319		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000602094		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-5UTR	ENST00000473184	ENST00000598830		TCGA	LD	SARC	TCGA-DX-A8BL-01A	GATAD2A	chr19	19516828	+	KXD1	chr19	18672846	+
intron-3CDS	ENST00000367604	ENST00000356698		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000367604	ENST00000368317		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000367604	ENST00000485757		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000367603	ENST00000356698		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000367603	ENST00000368317		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000367603	ENST00000485757		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000012134	ENST00000356698		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000012134	ENST00000368317		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000012134	ENST00000485757		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000474532	ENST00000356698		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3CDS	ENST00000474532	ENST00000368317		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
intron-3UTR	ENST00000474532	ENST00000485757		TCGA	LD	SARC	TCGA-DX-A8BL-01A	HIVEP2	chr6	143267081	-	RSPO3	chr6	127469793	+
5CDS-5UTR	ENST00000377967	ENST00000376919		TCGA	LD	SARC	TCGA-DX-A8BL-01A	KDM6A	chrX	44733233	+	SSX1	chrX	48116657	+
5CDS-5UTR	ENST00000382899	ENST00000376919		TCGA	LD	SARC	TCGA-DX-A8BL-01A	KDM6A	chrX	44733233	+	SSX1	chrX	48116657	+
5CDS-5UTR	ENST00000536777	ENST00000376919		TCGA	LD	SARC	TCGA-DX-A8BL-01A	KDM6A	chrX	44733233	+	SSX1	chrX	48116657	+
5CDS-5UTR	ENST00000543216	ENST00000376919		TCGA	LD	SARC	TCGA-DX-A8BL-01A	KDM6A	chrX	44733233	+	SSX1	chrX	48116657	+
intron-5UTR	ENST00000479423	ENST00000376919		TCGA	LD	SARC	TCGA-DX-A8BL-01A	KDM6A	chrX	44733233	+	SSX1	chrX	48116657	+
In-frame	ENST00000269919	ENST00000394456		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000269919	ENST00000429701		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000604499	ENST00000394456		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000604499	ENST00000429701		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000595066	ENST00000394456		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000595066	ENST00000429701		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000252813	ENST00000394456		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000252813	ENST00000429701		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000597431	ENST00000394456		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
In-frame	ENST00000597431	ENST00000429701		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PGPEP1	chr19	18466821	+	GTF2F1	chr19	6389648	-
intron-3CDS	ENST00000372891	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000372894	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000372892	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
5UTR-3CDS	ENST00000372889	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000372887	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000372882	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000477390	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000372886	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
intron-3CDS	ENST00000349959	ENST00000361337		TCGA	LD	SARC	TCGA-DX-A8BL-01A	PKIG	chr20	43227531	+	TOP1	chr20	39741422	+
Frame-shit	ENST00000265565	ENST00000430121		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SCAP	chr3	47476498	-	FAM198A	chr3	43073759	+
5UTR-3CDS	ENST00000441517	ENST00000430121		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SCAP	chr3	47476498	-	FAM198A	chr3	43073759	+
5UTR-3CDS	ENST00000545718	ENST00000430121		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SCAP	chr3	47476498	-	FAM198A	chr3	43073759	+
intron-3CDS	ENST00000465628	ENST00000430121		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SCAP	chr3	47476498	-	FAM198A	chr3	43073759	+
In-frame	ENST00000247001	ENST00000341130		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SUGP1	chr19	19407798	-	TMEM221	chr19	17547736	-
intron-3CDS	ENST00000585763	ENST00000341130		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SUGP1	chr19	19407798	-	TMEM221	chr19	17547736	-
intron-3CDS	ENST00000334782	ENST00000341130		TCGA	LD	SARC	TCGA-DX-A8BL-01A	SUGP1	chr19	19407798	-	TMEM221	chr19	17547736	-
5CDS-5UTR	ENST00000242067	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000242067	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000242067	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000355070	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000355070	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000355070	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000350941	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000350941	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000350941	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000354265	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000354265	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000354265	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000396127	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000396127	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000396127	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000425508	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-5UTR	ENST00000425508	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000425508	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
intron-5UTR	ENST00000482941	ENST00000371108		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
intron-5UTR	ENST00000482941	ENST00000263440		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
intron-intron	ENST00000482941	ENST00000494765		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BBS9	chr7	33195314	+	ALG6	chr1	63836442	+
5CDS-intron	ENST00000288602	ENST00000495013		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BRAF	chr7	140501212	-	MED4	chr13	48664554	-
5CDS-intron	ENST00000288602	ENST00000258648		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BRAF	chr7	140501212	-	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000288602	ENST00000378586		TCGA	LD	SARC	TCGA-DX-A8BM-01A	BRAF	chr7	140501212	-	MED4	chr13	48664554	-
Frame-shit	ENST00000261861	ENST00000261879		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000261861	ENST00000380343		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
5CDS-intron	ENST00000261861	ENST00000560716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000566799	ENST00000261879		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000566799	ENST00000380343		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
5CDS-intron	ENST00000566799	ENST00000560716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000540068	ENST00000261879		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000540068	ENST00000380343		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
5CDS-intron	ENST00000540068	ENST00000560716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000543950	ENST00000261879		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
Frame-shit	ENST00000543950	ENST00000380343		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
5CDS-intron	ENST00000543950	ENST00000560716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	CORO2B	chr15	69011891	+	APH1B	chr15	63571360	+
5CDS-intron	ENST00000315757	ENST00000286744		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
5CDS-intron	ENST00000315757	ENST00000567476		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
5CDS-3UTR	ENST00000315757	ENST00000567716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
5CDS-intron	ENST00000423218	ENST00000286744		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
5CDS-intron	ENST00000423218	ENST00000567476		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
5CDS-3UTR	ENST00000423218	ENST00000567716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
intron-intron	ENST00000562826	ENST00000286744		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
intron-intron	ENST00000562826	ENST00000567476		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
intron-3UTR	ENST00000562826	ENST00000567716		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ITGA11	chr15	68606117	-	ADAMTSL3	chr15	84630325	+
In-frame	ENST00000263268	ENST00000572933		TCGA	LD	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7733618	+
In-frame	ENST00000263268	ENST00000389173		TCGA	LD	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7733618	+
5CDS-intron	ENST00000263268	ENST00000570791		TCGA	LD	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7733618	+
5CDS-intron	ENST00000263268	ENST00000082259		TCGA	LD	SARC	TCGA-DX-A8BM-01A	MREG	chr2	216877956	-	DNAH2	chr17	7733618	+
5CDS-5UTR	ENST00000395938	ENST00000462175		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000395938	ENST00000395930		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000395938	ENST00000338696		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000312280	ENST00000462175		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000312280	ENST00000395930		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000312280	ENST00000338696		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000494511	ENST00000462175		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000494511	ENST00000395930		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000494511	ENST00000338696		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000395936	ENST00000462175		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000395936	ENST00000395930		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
5CDS-5UTR	ENST00000395936	ENST00000338696		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
intron-5UTR	ENST00000426385	ENST00000462175		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
intron-5UTR	ENST00000426385	ENST00000395930		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
intron-5UTR	ENST00000426385	ENST00000338696		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PMP22	chr17	15142788	-	TEKT3	chr17	15207469	-
Frame-shit	ENST00000306726	ENST00000380993		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
Frame-shit	ENST00000306726	ENST00000396577		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
5CDS-intron	ENST00000306726	ENST00000330289		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
5CDS-intron	ENST00000306726	ENST00000558405		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
5CDS-intron	ENST00000306726	ENST00000561031		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
5CDS-intron	ENST00000306726	ENST00000559723		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
intron-3CDS	ENST00000564970	ENST00000380993		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
intron-3CDS	ENST00000564970	ENST00000396577		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
intron-intron	ENST00000564970	ENST00000330289		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
intron-intron	ENST00000564970	ENST00000558405		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
intron-intron	ENST00000564970	ENST00000561031		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
intron-intron	ENST00000564970	ENST00000559723		TCGA	LD	SARC	TCGA-DX-A8BM-01A	PTPN9	chr15	75871055	-	SLC12A1	chr15	48541772	+
Frame-shit	ENST00000283195	ENST00000264111		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
Frame-shit	ENST00000283195	ENST00000397081		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
Frame-shit	ENST00000283195	ENST00000409036		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000283195	ENST00000397087		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000283195	ENST00000538974		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000283195	ENST00000540783		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000283195	ENST00000539331		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000283195	ENST00000473043		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000283195	ENST00000535187		TCGA	LD	SARC	TCGA-DX-A8BM-01A	RANBP2	chr2	109336134	+	RAPGEF4	chr2	173659753	+
5CDS-intron	ENST00000598441	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-3UTR	ENST00000598441	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000598441	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-3UTR	ENST00000221448	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
5CDS-intron	ENST00000221448	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SNRNP70	chr19	49593777	+	CTNNA2	chr2	79566846	+
In-frame	ENST00000261854	ENST00000288228		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SPPL2A	chr15	51057665	-	FAM81A	chr15	59784470	+
5CDS-intron	ENST00000261854	ENST00000557895		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SPPL2A	chr15	51057665	-	FAM81A	chr15	59784470	+
intron-3CDS	ENST00000559293	ENST00000288228		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SPPL2A	chr15	51057665	-	FAM81A	chr15	59784470	+
intron-intron	ENST00000559293	ENST00000557895		TCGA	LD	SARC	TCGA-DX-A8BM-01A	SPPL2A	chr15	51057665	-	FAM81A	chr15	59784470	+
5CDS-intron	ENST00000344204	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000344204	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000537187	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
5CDS-intron	ENST00000509967	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000515710	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000466387		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000496558		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000361291		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000402739		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000540488		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000541047		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000343114		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000496251		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-intron	ENST00000344135	ENST00000409266		TCGA	LD	SARC	TCGA-DX-A8BM-01A	TRIO	chr5	14336836	+	CTNNA2	chr2	79520313	+
intron-3CDS	ENST00000327835	ENST00000439602		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000327835	ENST00000474973		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000327835	ENST00000476222		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000454021		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000486781		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000484321		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000457341		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000476337		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000494232		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000434122		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000470276		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000211372		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000477055		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000476288		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000440980		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000327835	ENST00000497078		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-3CDS	ENST00000520336	ENST00000439602		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-5UTR	ENST00000520336	ENST00000474973		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-3UTR	ENST00000520336	ENST00000476222		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000454021		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000486781		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000484321		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000457341		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000476337		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000494232		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000434122		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000470276		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000211372		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000477055		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000476288		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000440980		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
intron-intron	ENST00000520336	ENST00000497078		TCGA	LD	SARC	TCGA-DX-A8BM-01A	ZNF704	chr8	81785779	-	RPS18	chr6	33240405	+
5UTR-3CDS	ENST00000395762	ENST00000356140		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000395762	ENST00000283054		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000395762	ENST00000392928		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000543915	ENST00000356140		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000543915	ENST00000283054		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000543915	ENST00000392928		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000449195	ENST00000356140		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000449195	ENST00000283054		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000449195	ENST00000392928		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000380922	ENST00000356140		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000380922	ENST00000283054		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000380922	ENST00000392928		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000170630	ENST00000356140		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000170630	ENST00000283054		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000170630	ENST00000392928		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000565915	ENST00000356140		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000565915	ENST00000283054		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000565915	ENST00000392928		TCGA	LD	SARC	TCGA-DX-A8BN-01A	IL4R	chr16	27325341	+	ACMSD	chr2	135655911	+
intron-intron	ENST00000381920	ENST00000568047		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000381920	ENST00000320640		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000381920	ENST00000544001		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000561758	ENST00000568047		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000561758	ENST00000320640		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000561758	ENST00000544001		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000568967	ENST00000568047		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000568967	ENST00000320640		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
intron-intron	ENST00000568967	ENST00000544001		TCGA	LD	SARC	TCGA-DX-A8BN-01A	METTL22	chr16	8741647	+	ITFG1	chr16	47409851	-
Frame-shit	ENST00000401950	ENST00000336726		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
5CDS-intron	ENST00000401950	ENST00000403975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
Frame-shit	ENST00000333027	ENST00000336726		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
5CDS-intron	ENST00000333027	ENST00000403975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
Frame-shit	ENST00000323630	ENST00000336726		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
5CDS-intron	ENST00000323630	ENST00000403975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
Frame-shit	ENST00000351488	ENST00000336726		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
5CDS-intron	ENST00000351488	ENST00000403975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
Frame-shit	ENST00000406629	ENST00000336726		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
5CDS-intron	ENST00000406629	ENST00000403975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
intron-3CDS	ENST00000415511	ENST00000336726		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
intron-intron	ENST00000415511	ENST00000403975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	MTMR3	chr22	30409462	+	HORMAD2	chr22	30476163	+
intron-intron	ENST00000249299	ENST00000568047		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000249299	ENST00000320640		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000249299	ENST00000544001		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000424702	ENST00000568047		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000424702	ENST00000320640		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000424702	ENST00000544001		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000422760	ENST00000568047		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000422760	ENST00000320640		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
intron-intron	ENST00000422760	ENST00000544001		TCGA	LD	SARC	TCGA-DX-A8BN-01A	NAA38	chr17	7786553	-	ITFG1	chr16	47409851	-
In-frame	ENST00000246548	ENST00000253193		TCGA	LD	SARC	TCGA-DX-A8BN-01A	UBA2	chr19	34957919	+	LRP3	chr19	33687636	+
In-frame	ENST00000439527	ENST00000253193		TCGA	LD	SARC	TCGA-DX-A8BN-01A	UBA2	chr19	34957919	+	LRP3	chr19	33687636	+
In-frame	ENST00000592791	ENST00000253193		TCGA	LD	SARC	TCGA-DX-A8BN-01A	UBA2	chr19	34957919	+	LRP3	chr19	33687636	+
intron-3CDS	ENST00000588585	ENST00000253193		TCGA	LD	SARC	TCGA-DX-A8BN-01A	UBA2	chr19	34957919	+	LRP3	chr19	33687636	+
Frame-shit	ENST00000319296	ENST00000300851		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000319296	ENST00000319788		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000319296	ENST00000354895		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000319296	ENST00000394975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000319296	ENST00000394971		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000319296	ENST00000498155		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
Frame-shit	ENST00000434417	ENST00000300851		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000434417	ENST00000319788		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000434417	ENST00000354895		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000434417	ENST00000394975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000434417	ENST00000394971		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000434417	ENST00000498155		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
Frame-shit	ENST00000566625	ENST00000300851		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000566625	ENST00000319788		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000566625	ENST00000354895		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000566625	ENST00000394975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000566625	ENST00000394971		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000566625	ENST00000498155		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
Frame-shit	ENST00000564550	ENST00000300851		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000564550	ENST00000319788		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000564550	ENST00000354895		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000564550	ENST00000394975		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000564550	ENST00000394971		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-intron	ENST00000564550	ENST00000498155		TCGA	LD	SARC	TCGA-DX-A8BN-01A	ZNF771	chr16	30419515	+	VKORC1	chr16	31104803	-
5CDS-5UTR	ENST00000262435	ENST00000543774		TCGA	LD	SARC	TCGA-DX-A8BQ-01A	SMURF2	chr17	62589558	-	KAT8	chr16	31128784	+
5CDS-intron	ENST00000262435	ENST00000448516		TCGA	LD	SARC	TCGA-DX-A8BQ-01A	SMURF2	chr17	62589558	-	KAT8	chr16	31128784	+
5CDS-intron	ENST00000262435	ENST00000219797		TCGA	LD	SARC	TCGA-DX-A8BQ-01A	SMURF2	chr17	62589558	-	KAT8	chr16	31128784	+
intron-5UTR	ENST00000578200	ENST00000543774		TCGA	LD	SARC	TCGA-DX-A8BQ-01A	SMURF2	chr17	62589558	-	KAT8	chr16	31128784	+
intron-intron	ENST00000578200	ENST00000448516		TCGA	LD	SARC	TCGA-DX-A8BQ-01A	SMURF2	chr17	62589558	-	KAT8	chr16	31128784	+
intron-intron	ENST00000578200	ENST00000219797		TCGA	LD	SARC	TCGA-DX-A8BQ-01A	SMURF2	chr17	62589558	-	KAT8	chr16	31128784	+
Frame-shit	ENST00000556611	ENST00000400393		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-5UTR	ENST00000556611	ENST00000443723		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-intron	ENST00000556611	ENST00000504404		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
Frame-shit	ENST00000539826	ENST00000400393		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-5UTR	ENST00000539826	ENST00000443723		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-intron	ENST00000539826	ENST00000504404		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
intron-3CDS	ENST00000396582	ENST00000400393		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
intron-5UTR	ENST00000396582	ENST00000443723		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
intron-intron	ENST00000396582	ENST00000504404		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
Frame-shit	ENST00000432921	ENST00000400393		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-5UTR	ENST00000432921	ENST00000443723		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-intron	ENST00000432921	ENST00000504404		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
Frame-shit	ENST00000345122	ENST00000400393		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-5UTR	ENST00000345122	ENST00000443723		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-intron	ENST00000345122	ENST00000504404		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
Frame-shit	ENST00000433497	ENST00000400393		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-5UTR	ENST00000433497	ENST00000443723		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-intron	ENST00000433497	ENST00000504404		TCGA	LD	SARC	TCGA-DX-A8BR-01A	ARHGAP5	chr14	32586493	+	DLEU7	chr13	51287376	-
5CDS-intron	ENST00000234739	ENST00000367843		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
5CDS-intron	ENST00000234739	ENST00000432587		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
5CDS-intron	ENST00000234739	ENST00000312263		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
5CDS-intron	ENST00000234739	ENST00000367840		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
5CDS-intron	ENST00000234739	ENST00000470919		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
3UTR-intron	ENST00000473292	ENST00000367843		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
3UTR-intron	ENST00000473292	ENST00000432587		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
3UTR-intron	ENST00000473292	ENST00000312263		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
3UTR-intron	ENST00000473292	ENST00000367840		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
3UTR-intron	ENST00000473292	ENST00000470919		TCGA	LD	SARC	TCGA-DX-A8BR-01A	BCL9	chr1	147084776	+	DCAF6	chr1	167988783	+
5CDS-intron	ENST00000282020	ENST00000526541		TCGA	LD	SARC	TCGA-DX-A8BR-01A	GRID2	chr4	94006430	+	TRPC2	chr11	3631134	+
3UTR-intron	ENST00000505687	ENST00000526541		TCGA	LD	SARC	TCGA-DX-A8BR-01A	GRID2	chr4	94006430	+	TRPC2	chr11	3631134	+
intron-intron	ENST00000510992	ENST00000526541		TCGA	LD	SARC	TCGA-DX-A8BR-01A	GRID2	chr4	94006430	+	TRPC2	chr11	3631134	+
5CDS-intron	ENST00000399332	ENST00000314622		TCGA	LD	SARC	TCGA-DX-A8BR-01A	HECTD1	chr14	31617927	-	NSUN3	chr3	93800453	+
5CDS-3UTR	ENST00000399332	ENST00000485793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	HECTD1	chr14	31617927	-	NSUN3	chr3	93800453	+
5CDS-intron	ENST00000553700	ENST00000314622		TCGA	LD	SARC	TCGA-DX-A8BR-01A	HECTD1	chr14	31617927	-	NSUN3	chr3	93800453	+
5CDS-3UTR	ENST00000553700	ENST00000485793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	HECTD1	chr14	31617927	-	NSUN3	chr3	93800453	+
intron-intron	ENST00000556474	ENST00000314622		TCGA	LD	SARC	TCGA-DX-A8BR-01A	HECTD1	chr14	31617927	-	NSUN3	chr3	93800453	+
intron-3UTR	ENST00000556474	ENST00000485793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	HECTD1	chr14	31617927	-	NSUN3	chr3	93800453	+
5CDS-intron	ENST00000324932	ENST00000432689		TCGA	LD	SARC	TCGA-DX-A8BR-01A	NUP98	chr11	3700784	-	AKR1C7P	chr10	5327975	-
5CDS-intron	ENST00000359171	ENST00000432689		TCGA	LD	SARC	TCGA-DX-A8BR-01A	NUP98	chr11	3700784	-	AKR1C7P	chr10	5327975	-
5CDS-intron	ENST00000355260	ENST00000432689		TCGA	LD	SARC	TCGA-DX-A8BR-01A	NUP98	chr11	3700784	-	AKR1C7P	chr10	5327975	-
intron-intron	ENST00000397004	ENST00000432689		TCGA	LD	SARC	TCGA-DX-A8BR-01A	NUP98	chr11	3700784	-	AKR1C7P	chr10	5327975	-
intron-intron	ENST00000397007	ENST00000432689		TCGA	LD	SARC	TCGA-DX-A8BR-01A	NUP98	chr11	3700784	-	AKR1C7P	chr10	5327975	-
intron-intron	ENST00000488828	ENST00000432689		TCGA	LD	SARC	TCGA-DX-A8BR-01A	NUP98	chr11	3700784	-	AKR1C7P	chr10	5327975	-
5UTR-5UTR	ENST00000313367	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000313367	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000313367	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000313367	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-intron	ENST00000313367	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000431825	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000431825	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000431825	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000431825	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-intron	ENST00000431825	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000352860	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000352860	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000352860	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000352860	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-intron	ENST00000352860	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000353930	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000353930	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000353930	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-5UTR	ENST00000353930	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-intron	ENST00000353930	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396431	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396431	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396431	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396431	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-intron	ENST00000396431	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000409069	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000409069	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000409069	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000409069	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-intron	ENST00000409069	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396429	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396429	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396429	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000396429	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-intron	ENST00000396429	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000487020	ENST00000493429		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000487020	ENST00000467291		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000487020	ENST00000360937		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-5UTR	ENST00000487020	ENST00000416793		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
intron-intron	ENST00000487020	ENST00000480582		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	AOC1	chr7	150553543	+
5UTR-3CDS	ENST00000313367	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000313367	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000313367	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000431825	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000431825	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000431825	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000352860	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000352860	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000352860	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000353930	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000353930	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000353930	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000396431	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000396431	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000396431	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000409069	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000409069	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000409069	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000396429	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000396429	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000396429	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000487020	ENST00000484928		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000487020	ENST00000004103		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
intron-3CDS	ENST00000487020	ENST00000461345		TCGA	LD	SARC	TCGA-DX-A8BR-01A	OSBPL3	chr7	25019505	-	TMEM176A	chr7	150501915	+
5UTR-3CDS	ENST00000248929	ENST00000359139		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000248929	ENST00000395741		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000248929	ENST00000395744		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000248929	ENST00000216061		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000454798	ENST00000359139		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000454798	ENST00000395741		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000454798	ENST00000395744		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
5UTR-3CDS	ENST00000454798	ENST00000216061		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SGSM3	chr22	40766692	+	PPP6R2	chr22	50870694	+
Frame-shit	ENST00000503362	ENST00000345317		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SPCS3	chr4	177245408	+	SKAP2	chr7	26729981	-
Frame-shit	ENST00000503362	ENST00000539623		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SPCS3	chr4	177245408	+	SKAP2	chr7	26729981	-
5CDS-5UTR	ENST00000503362	ENST00000489977		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SPCS3	chr4	177245408	+	SKAP2	chr7	26729981	-
intron-3CDS	ENST00000507001	ENST00000345317		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SPCS3	chr4	177245408	+	SKAP2	chr7	26729981	-
intron-3CDS	ENST00000507001	ENST00000539623		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SPCS3	chr4	177245408	+	SKAP2	chr7	26729981	-
intron-5UTR	ENST00000507001	ENST00000489977		TCGA	LD	SARC	TCGA-DX-A8BR-01A	SPCS3	chr4	177245408	+	SKAP2	chr7	26729981	-
intron-5UTR	ENST00000376062	ENST00000340513		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
intron-5UTR	ENST00000376062	ENST00000300403		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
5CDS-5UTR	ENST00000376055	ENST00000340513		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
5CDS-5UTR	ENST00000376055	ENST00000300403		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
intron-5UTR	ENST00000307677	ENST00000340513		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
intron-5UTR	ENST00000307677	ENST00000300403		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
intron-5UTR	ENST00000420653	ENST00000340513		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
intron-5UTR	ENST00000420653	ENST00000300403		TCGA	LD	SARC	TCGA-DX-A8BS-01A	BCL2L1	chr20	30309647	-	TPX2	chr20	30345210	+
Frame-shit	ENST00000278836	ENST00000377897		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
In-frame	ENST00000278836	ENST00000294179		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
Frame-shit	ENST00000278836	ENST00000394690		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
Frame-shit	ENST00000278836	ENST00000541317		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000265460	ENST00000377897		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000265460	ENST00000294179		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000265460	ENST00000394690		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000265460	ENST00000541317		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000327797	ENST00000377897		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000327797	ENST00000294179		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000327797	ENST00000394690		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000327797	ENST00000541317		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000389602	ENST00000377897		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000389602	ENST00000294179		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000389602	ENST00000394690		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
intron-3CDS	ENST00000389602	ENST00000541317		TCGA	LD	SARC	TCGA-DX-A8BS-01A	MYRF	chr11	61520262	+	STX5	chr11	62575100	-
5CDS-5UTR	ENST00000353487	ENST00000548312		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SPPL3	chr12	121341648	-	HVCN1	chr12	111121069	-
5CDS-5UTR	ENST00000353487	ENST00000242607		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SPPL3	chr12	121341648	-	HVCN1	chr12	111121069	-
5CDS-5UTR	ENST00000353487	ENST00000356742		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SPPL3	chr12	121341648	-	HVCN1	chr12	111121069	-
5CDS-intron	ENST00000353487	ENST00000439744		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SPPL3	chr12	121341648	-	HVCN1	chr12	111121069	-
intron-3CDS	ENST00000216297	ENST00000425825		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SUPT16H	chr14	21842861	-	BRMS1	chr11	66108337	-
intron-3CDS	ENST00000216297	ENST00000359957		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SUPT16H	chr14	21842861	-	BRMS1	chr11	66108337	-
intron-3CDS	ENST00000555943	ENST00000425825		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SUPT16H	chr14	21842861	-	BRMS1	chr11	66108337	-
intron-3CDS	ENST00000555943	ENST00000359957		TCGA	LD	SARC	TCGA-DX-A8BS-01A	SUPT16H	chr14	21842861	-	BRMS1	chr11	66108337	-
In-frame	ENST00000216807	ENST00000551492		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000346562		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000341321		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000548645		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000356141		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000357798		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000547068		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000216807	ENST00000551008		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
5CDS-intron	ENST00000216807	ENST00000550662		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000551492		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000346562		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000341321		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000548645		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000356141		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000357798		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000547068		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000543183	ENST00000551008		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
5CDS-intron	ENST00000543183	ENST00000550662		TCGA	LD	SARC	TCGA-DX-A8BT-01A	BRMS1L	chr14	36304129	+	NPAS3	chr14	34029327	+
In-frame	ENST00000218507	ENST00000378621		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
In-frame	ENST00000218507	ENST00000378619		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
In-frame	ENST00000423383	ENST00000378621		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
In-frame	ENST00000423383	ENST00000378619		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
In-frame	ENST00000372927	ENST00000378621		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
In-frame	ENST00000372927	ENST00000378619		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
intron-3CDS	ENST00000372926	ENST00000378621		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
intron-3CDS	ENST00000372926	ENST00000378619		TCGA	LD	SARC	TCGA-DX-A8BT-01A	CENPI	chrX	100403150	+	LANCL3	chrX	37514941	+
intron-3CDS	ENST00000413465	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3CDS	ENST00000413465	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3UTR	ENST00000413465	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3CDS	ENST00000359597	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3CDS	ENST00000359597	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3UTR	ENST00000359597	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000269305	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000269305	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000269305	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000455263	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000455263	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000455263	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000420246	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000420246	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000420246	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000445888	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3CDS	ENST00000445888	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
5UTR-3UTR	ENST00000445888	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3CDS	ENST00000574684	ENST00000349048		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3CDS	ENST00000574684	ENST00000403390		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-3UTR	ENST00000574684	ENST00000496824		TCGA	LD	SARC	TCGA-DX-A8BT-01A	TP53	chr17	7590695	-	PFKL	chr21	45726564	+
intron-intron	ENST00000262093	ENST00000589935		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000262093	ENST00000357574		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000262093	ENST00000254442		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000382873	ENST00000589935		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000382873	ENST00000357574		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000382873	ENST00000254442		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000585699	ENST00000589935		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000585699	ENST00000357574		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
intron-intron	ENST00000585699	ENST00000254442		TCGA	LD	SARC	TCGA-DX-A8BU-01A	FECH	chr18	55253096	-	WDR7	chr18	54629661	+
In-frame	ENST00000398174	ENST00000373913		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000398174	ENST00000401952		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000398174	ENST00000373907		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000398174	ENST00000339266		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000398174	ENST00000475894		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000398174	ENST00000340491		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000340852	ENST00000373913		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000340852	ENST00000401952		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000340852	ENST00000373907		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000340852	ENST00000339266		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000340852	ENST00000475894		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000340852	ENST00000340491		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000335574	ENST00000373913		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000335574	ENST00000401952		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000335574	ENST00000373907		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000335574	ENST00000339266		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000335574	ENST00000475894		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000335574	ENST00000340491		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000376127	ENST00000373913		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000376127	ENST00000401952		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000376127	ENST00000373907		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
In-frame	ENST00000376127	ENST00000339266		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000376127	ENST00000475894		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-intron	ENST00000376127	ENST00000340491		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000492709	ENST00000373913		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000492709	ENST00000401952		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000492709	ENST00000373907		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
intron-3CDS	ENST00000492709	ENST00000339266		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
intron-intron	ENST00000492709	ENST00000475894		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
intron-intron	ENST00000492709	ENST00000340491		TCGA	LD	SARC	TCGA-DX-A8BU-01A	HM13	chr20	30115385	+	DLGAP4	chr20	35071130	+
5CDS-5UTR	ENST00000540746	ENST00000587682		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000540746	ENST00000251269		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000540746	ENST00000592350		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000544216	ENST00000587682		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000544216	ENST00000251269		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000544216	ENST00000592350		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000433627	ENST00000587682		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000433627	ENST00000251269		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
5CDS-5UTR	ENST00000433627	ENST00000592350		TCGA	LD	SARC	TCGA-DX-A8BU-01A	LSM14A	chr19	34687668	+	ZNF221	chr19	44466877	+
intron-intron	ENST00000450793	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000450793	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000538141	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000538141	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000380180	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000380180	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000318007	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000318007	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000437932	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000437932	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000317968	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000317968	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000542407	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000542407	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000508216	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000508216	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000514743	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
5CDS-intron	ENST00000514743	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
3UTR-intron	ENST00000380176	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
3UTR-intron	ENST00000380176	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000359265	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000359265	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000512274	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000512274	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000504489	ENST00000506482		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-intron	ENST00000504489	ENST00000295268		TCGA	LD	SARC	TCGA-DX-A8BU-01A	PDLIM5	chr4	95561601	+	STPG2	chr4	98108984	-
intron-3CDS	ENST00000541742	ENST00000291009		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SMYD3	chr1	246670356	-	PIP	chr7	142832287	+
5UTR-3CDS	ENST00000490107	ENST00000291009		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SMYD3	chr1	246670356	-	PIP	chr7	142832287	+
Frame-shit	ENST00000388985	ENST00000291009		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SMYD3	chr1	246670356	-	PIP	chr7	142832287	+
intron-3CDS	ENST00000366517	ENST00000291009		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SMYD3	chr1	246670356	-	PIP	chr7	142832287	+
Frame-shit	ENST00000403792	ENST00000291009		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SMYD3	chr1	246670356	-	PIP	chr7	142832287	+
5UTR-3CDS	ENST00000375400	ENST00000377524		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
5UTR-5UTR	ENST00000375400	ENST00000540523		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
5UTR-3CDS	ENST00000375398	ENST00000377524		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
5UTR-5UTR	ENST00000375398	ENST00000540523		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000355867	ENST00000377524		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000355867	ENST00000540523		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000535393	ENST00000377524		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000535393	ENST00000540523		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000460007	ENST00000377524		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000460007	ENST00000540523		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-3CDS	ENST00000538146	ENST00000377524		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
intron-5UTR	ENST00000538146	ENST00000540523		TCGA	LD	SARC	TCGA-DX-A8BU-01A	SVIL	chr10	29946898	-	STAM	chr10	17702463	+
5CDS-intron	ENST00000393359	ENST00000410059		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000393359	ENST00000409163		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000393359	ENST00000393147		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000393359	ENST00000310323		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000393359	ENST00000488208		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000258449	ENST00000410059		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000258449	ENST00000409163		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000258449	ENST00000393147		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000258449	ENST00000310323		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
5CDS-intron	ENST00000258449	ENST00000488208		TCGA	LD	SARC	TCGA-DX-A8BU-01A	TGFBRAP1	chr2	105912813	-	DPP10	chr2	115464694	+
In-frame	ENST00000349714	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000349714	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000349714	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000349714	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000349714	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3CDS	ENST00000359226	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000359226	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-intron	ENST00000359226	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-intron	ENST00000359226	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000359226	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
In-frame	ENST00000374384	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374384	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374384	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374384	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374384	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
In-frame	ENST00000374380	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374380	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374380	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374380	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374380	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
In-frame	ENST00000374385	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374385	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374385	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374385	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374385	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
Frame-shit	ENST00000374377	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374377	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374377	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000374377	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000374377	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
In-frame	ENST00000397556	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000397556	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000397556	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000397556	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000397556	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3CDS	ENST00000407996	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000407996	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-intron	ENST00000407996	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-intron	ENST00000407996	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000407996	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
Frame-shit	ENST00000540457	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000540457	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000540457	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000540457	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000540457	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
In-frame	ENST00000542501	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000542501	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000542501	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-intron	ENST00000542501	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5CDS-3UTR	ENST00000542501	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3CDS	ENST00000397554	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000397554	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-intron	ENST00000397554	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-intron	ENST00000397554	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
intron-3UTR	ENST00000397554	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5UTR-3CDS	ENST00000491125	ENST00000375687		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5UTR-3UTR	ENST00000491125	ENST00000542461		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5UTR-intron	ENST00000491125	ENST00000375689		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5UTR-intron	ENST00000491125	ENST00000306058		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
5UTR-3UTR	ENST00000491125	ENST00000470145		TCGA	LD	SARC	TCGA-DX-A8BU-01A	UQCC1	chr20	33934967	-	ASXL1	chr20	31015931	+
In-frame	ENST00000375799	ENST00000415912		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375799	ENST00000357071		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375799	ENST00000374893		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375799	ENST00000436918		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375799	ENST00000264205		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
5CDS-5UTR	ENST00000375799	ENST00000528294		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375793	ENST00000415912		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375793	ENST00000357071		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375793	ENST00000374893		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375793	ENST00000436918		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
In-frame	ENST00000375793	ENST00000264205		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
5CDS-5UTR	ENST00000375793	ENST00000528294		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
intron-3CDS	ENST00000477849	ENST00000415912		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
intron-3CDS	ENST00000477849	ENST00000357071		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
intron-3CDS	ENST00000477849	ENST00000374893		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
intron-3CDS	ENST00000477849	ENST00000436918		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
intron-3CDS	ENST00000477849	ENST00000264205		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
intron-5UTR	ENST00000477849	ENST00000528294		TCGA	LD	SARC	TCGA-DX-A8BV-01A	PLEKHM2	chr1	16045120	+	ECE1	chr1	21573856	-
Frame-shit	ENST00000397906	ENST00000339468		TCGA	LD	SARC	TCGA-DX-A8BV-01A	TTC28	chr22	29025540	-	YPEL1	chr22	22055507	-
5CDS-intron	ENST00000397906	ENST00000403503		TCGA	LD	SARC	TCGA-DX-A8BV-01A	TTC28	chr22	29025540	-	YPEL1	chr22	22055507	-
intron-3CDS	ENST00000490475	ENST00000339468		TCGA	LD	SARC	TCGA-DX-A8BV-01A	TTC28	chr22	29025540	-	YPEL1	chr22	22055507	-
intron-intron	ENST00000490475	ENST00000403503		TCGA	LD	SARC	TCGA-DX-A8BV-01A	TTC28	chr22	29025540	-	YPEL1	chr22	22055507	-
intron-intron	ENST00000544798	ENST00000487500		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000544798	ENST00000396467		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000544798	ENST00000352983		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000544798	ENST00000396466		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000544798	ENST00000396465		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-intron	ENST00000238156	ENST00000487500		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000238156	ENST00000396467		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000238156	ENST00000352983		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000238156	ENST00000396466		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000238156	ENST00000396465		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-intron	ENST00000545135	ENST00000487500		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000545135	ENST00000396467		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000545135	ENST00000352983		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000545135	ENST00000396466		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
intron-5UTR	ENST00000545135	ENST00000396465		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-intron	ENST00000545891	ENST00000487500		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000545891	ENST00000396467		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000545891	ENST00000352983		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000545891	ENST00000396466		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
5UTR-5UTR	ENST00000545891	ENST00000396465		TCGA	LD	SARC	TCGA-DX-A8BX-01A	CCDC92	chr12	124457076	-	RPL7	chr8	74205032	-
In-frame	ENST00000260372	ENST00000551456		TCGA	LD	SARC	TCGA-DX-A8BX-01A	HAUS2	chr15	42841163	+	TMPRSS12	chr12	51279029	+
Frame-shit	ENST00000260372	ENST00000398458		TCGA	LD	SARC	TCGA-DX-A8BX-01A	HAUS2	chr15	42841163	+	TMPRSS12	chr12	51279029	+
In-frame	ENST00000568876	ENST00000551456		TCGA	LD	SARC	TCGA-DX-A8BX-01A	HAUS2	chr15	42841163	+	TMPRSS12	chr12	51279029	+
Frame-shit	ENST00000568876	ENST00000398458		TCGA	LD	SARC	TCGA-DX-A8BX-01A	HAUS2	chr15	42841163	+	TMPRSS12	chr12	51279029	+
In-frame	ENST00000568846	ENST00000551456		TCGA	LD	SARC	TCGA-DX-A8BX-01A	HAUS2	chr15	42841163	+	TMPRSS12	chr12	51279029	+
Frame-shit	ENST00000568846	ENST00000398458		TCGA	LD	SARC	TCGA-DX-A8BX-01A	HAUS2	chr15	42841163	+	TMPRSS12	chr12	51279029	+
Frame-shit	ENST00000265192	ENST00000275262		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000265192	ENST00000392127		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000265192	ENST00000453779		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000265192	ENST00000361752		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000265192	ENST00000361195		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000265192	ENST00000424802		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
3UTR-3CDS	ENST00000511381	ENST00000275262		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
3UTR-3CDS	ENST00000511381	ENST00000392127		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
3UTR-3CDS	ENST00000511381	ENST00000453779		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
3UTR-3CDS	ENST00000511381	ENST00000361752		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
3UTR-intron	ENST00000511381	ENST00000361195		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
3UTR-intron	ENST00000511381	ENST00000424802		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
intron-3CDS	ENST00000511706	ENST00000275262		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
intron-3CDS	ENST00000511706	ENST00000392127		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
intron-3CDS	ENST00000511706	ENST00000453779		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
intron-3CDS	ENST00000511706	ENST00000361752		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
intron-intron	ENST00000511706	ENST00000361195		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
intron-intron	ENST00000511706	ENST00000424802		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000394795	ENST00000275262		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000394795	ENST00000392127		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000394795	ENST00000453779		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000394795	ENST00000361752		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000394795	ENST00000361195		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000394795	ENST00000424802		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000510080	ENST00000275262		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000510080	ENST00000392127		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000510080	ENST00000453779		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
Frame-shit	ENST00000510080	ENST00000361752		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000510080	ENST00000361195		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000510080	ENST00000424802		TCGA	LD	SARC	TCGA-DX-A8BX-01A	PAIP2	chr5	138700432	+	QKI	chr6	163984452	+
5CDS-intron	ENST00000374550	ENST00000349938		TCGA	LD	SARC	TCGA-DX-A8BX-01A	RPL11	chr1	24021281	+	ARMC9	chr2	232225466	+
5CDS-3UTR	ENST00000374550	ENST00000483477		TCGA	LD	SARC	TCGA-DX-A8BX-01A	RPL11	chr1	24021281	+	ARMC9	chr2	232225466	+
3UTR-intron	ENST00000482370	ENST00000349938		TCGA	LD	SARC	TCGA-DX-A8BX-01A	RPL11	chr1	24021281	+	ARMC9	chr2	232225466	+
3UTR-3UTR	ENST00000482370	ENST00000483477		TCGA	LD	SARC	TCGA-DX-A8BX-01A	RPL11	chr1	24021281	+	ARMC9	chr2	232225466	+
In-frame	ENST00000395996	ENST00000520643		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000395996	ENST00000251809		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000395996	ENST00000520508		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000395996	ENST00000388798		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000395996	ENST00000523302		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000520643		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000251809		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000520508		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000388798		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000358544	ENST00000523302		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000520643		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000251809		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000520508		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000388798		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000357162	ENST00000523302		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000355155	ENST00000520643		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000355155	ENST00000251809		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000355155	ENST00000520508		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000355155	ENST00000388798		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-intron	ENST00000355155	ENST00000523302		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000520643		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000251809		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000520508		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000388798		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-intron	ENST00000441350	ENST00000523302		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000521932	ENST00000520643		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000521932	ENST00000251809		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000521932	ENST00000520508		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000521932	ENST00000388798		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
intron-intron	ENST00000521932	ENST00000523302		TCGA	LD	SARC	TCGA-DX-A8BX-01A	VPS13B	chr8	100287482	+	SPAG1	chr8	101203618	+
5CDS-5UTR	ENST00000355827	ENST00000476971		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000355827	ENST00000359237		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000373054	ENST00000476971		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000373054	ENST00000359237		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000373061	ENST00000476971		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000373061	ENST00000359237		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000373049	ENST00000476971		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000373049	ENST00000359237		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000324765	ENST00000476971		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
5CDS-5UTR	ENST00000324765	ENST00000359237		TCGA	LD	SARC	TCGA-DX-A8BZ-01A	DIAPH2	chrX	96013257	+	PLAC1	chrX	133736152	-
In-frame	ENST00000545314	ENST00000540432		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000545314	ENST00000354777		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000545314	ENST00000262348		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000545314	ENST00000370976		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
5CDS-intron	ENST00000545314	ENST00000370971		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
5CDS-intron	ENST00000545314	ENST00000491811		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
3UTR-3CDS	ENST00000470888	ENST00000540432		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
3UTR-3CDS	ENST00000470888	ENST00000354777		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
3UTR-3CDS	ENST00000470888	ENST00000262348		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
3UTR-3CDS	ENST00000470888	ENST00000370976		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
3UTR-intron	ENST00000470888	ENST00000370971		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
3UTR-intron	ENST00000470888	ENST00000491811		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
intron-3CDS	ENST00000546702	ENST00000540432		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
intron-3CDS	ENST00000546702	ENST00000354777		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
intron-3CDS	ENST00000546702	ENST00000262348		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
intron-3CDS	ENST00000546702	ENST00000370976		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
intron-intron	ENST00000546702	ENST00000370971		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
intron-intron	ENST00000546702	ENST00000491811		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000395334	ENST00000540432		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000395334	ENST00000354777		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000395334	ENST00000262348		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000395334	ENST00000370976		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
5CDS-intron	ENST00000395334	ENST00000370971		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
5CDS-intron	ENST00000395334	ENST00000491811		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000327299	ENST00000540432		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000327299	ENST00000354777		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000327299	ENST00000262348		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
In-frame	ENST00000327299	ENST00000370976		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
5CDS-intron	ENST00000327299	ENST00000370971		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
5CDS-intron	ENST00000327299	ENST00000491811		TCGA	LD	SARC	TCGA-DX-AATS-01A	AK4	chr1	65614235	+	WLS	chr1	68624930	-
Frame-shit	ENST00000418814	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000418814	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000418814	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000418814	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000418814	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000418814	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000370479	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000370479	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000370479	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000370479	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000370479	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000370479	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000505769	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000505769	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505769	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505769	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505769	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505769	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000457062	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000457062	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000457062	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000457062	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000457062	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000457062	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000361499	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000361499	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000361499	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000361499	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000361499	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000361499	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000505868	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
Frame-shit	ENST00000505868	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505868	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505868	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505868	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
5CDS-intron	ENST00000505868	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
intron-3CDS	ENST00000508844	ENST00000361719		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
intron-3CDS	ENST00000508844	ENST00000392299		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
intron-intron	ENST00000508844	ENST00000492807		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
intron-intron	ENST00000508844	ENST00000355289		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
intron-intron	ENST00000508844	ENST00000282753		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
intron-intron	ENST00000508844	ENST00000507907		TCGA	LD	SARC	TCGA-DX-AATS-01A	FAM135A	chr6	71212494	+	GRM1	chr6	146348784	+
In-frame	ENST00000281938	ENST00000374242		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
5CDS-5UTR	ENST00000281938	ENST00000374238		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
5CDS-5UTR	ENST00000281938	ENST00000497712		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
5CDS-5UTR	ENST00000281938	ENST00000374236		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
5CDS-5UTR	ENST00000281938	ENST00000374234		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
intron-3CDS	ENST00000542496	ENST00000374242		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
intron-5UTR	ENST00000542496	ENST00000374238		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
intron-5UTR	ENST00000542496	ENST00000497712		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
intron-5UTR	ENST00000542496	ENST00000374236		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
intron-5UTR	ENST00000542496	ENST00000374234		TCGA	LD	SARC	TCGA-DX-AATS-01A	HSPB8	chr12	119617484	+	INIP	chr9	115456513	-
Frame-shit	ENST00000309446	ENST00000427836		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000309446	ENST00000389247		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000309446	ENST00000457206		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-3CDS	ENST00000421199	ENST00000427836		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000421199	ENST00000389247		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000421199	ENST00000457206		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
Frame-shit	ENST00000423015	ENST00000427836		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000423015	ENST00000389247		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000423015	ENST00000457206		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
Frame-shit	ENST00000458272	ENST00000427836		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000458272	ENST00000389247		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
5CDS-intron	ENST00000458272	ENST00000457206		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-3CDS	ENST00000412414	ENST00000427836		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000412414	ENST00000389247		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000412414	ENST00000457206		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-3CDS	ENST00000467833	ENST00000427836		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000467833	ENST00000389247		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
intron-intron	ENST00000467833	ENST00000457206		TCGA	LD	SARC	TCGA-DX-AATS-01A	KLF7	chr2	208030191	-	PLEKHM3	chr2	208693220	-
Frame-shit	ENST00000415083	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000415083	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000415083	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000415083	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000542420	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000542420	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000542420	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000542420	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000542743	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000542743	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000542743	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-intron	ENST00000542743	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000539849	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000539849	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000539849	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-intron	ENST00000539849	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000269137	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000269137	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
Frame-shit	ENST00000269137	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5CDS-intron	ENST00000269137	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000545952	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000545952	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000545952	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-intron	ENST00000545952	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000585241	ENST00000361524		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000585241	ENST00000584787		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-3CDS	ENST00000585241	ENST00000538137		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
5UTR-intron	ENST00000585241	ENST00000579111		TCGA	LD	SARC	TCGA-DX-AATS-01A	SS18	chr18	23667465	-	ZNF521	chr18	22672045	-
In-frame	ENST00000332624	ENST00000443700		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000332624	ENST00000396654		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000332624	ENST00000396653		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000332624	ENST00000446015		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000332624	ENST00000409375		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000332624	ENST00000423110		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000430254	ENST00000443700		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000430254	ENST00000396654		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000430254	ENST00000396653		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000430254	ENST00000446015		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000430254	ENST00000409375		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
In-frame	ENST00000430254	ENST00000423110		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
5UTR-3CDS	ENST00000451703	ENST00000443700		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
5UTR-3CDS	ENST00000451703	ENST00000396654		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
5UTR-3CDS	ENST00000451703	ENST00000396653		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
5UTR-3CDS	ENST00000451703	ENST00000446015		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
5UTR-3CDS	ENST00000451703	ENST00000409375		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
5UTR-3CDS	ENST00000451703	ENST00000423110		TCGA	LD	SARC	TCGA-DX-AATS-01A	TRAK2	chr2	202285140	-	AP1S3	chr2	224642586	-
Frame-shit	ENST00000233055	ENST00000272907		TCGA	LD	SARC	TCGA-DX-AATS-01A	WDFY1	chr2	224809865	-	NYAP2	chr2	226516148	+
5CDS-intron	ENST00000233055	ENST00000409269		TCGA	LD	SARC	TCGA-DX-AATS-01A	WDFY1	chr2	224809865	-	NYAP2	chr2	226516148	+
intron-3CDS	ENST00000462702	ENST00000272907		TCGA	LD	SARC	TCGA-DX-AATS-01A	WDFY1	chr2	224809865	-	NYAP2	chr2	226516148	+
intron-intron	ENST00000462702	ENST00000409269		TCGA	LD	SARC	TCGA-DX-AATS-01A	WDFY1	chr2	224809865	-	NYAP2	chr2	226516148	+
In-frame	ENST00000380672	ENST00000276893		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
In-frame	ENST00000380672	ENST00000381373		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
5CDS-intron	ENST00000380672	ENST00000485617		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
In-frame	ENST00000380667	ENST00000276893		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
In-frame	ENST00000380667	ENST00000381373		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
5CDS-intron	ENST00000380667	ENST00000485617		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000545497	ENST00000276893		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000545497	ENST00000381373		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
intron-intron	ENST00000545497	ENST00000485617		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
In-frame	ENST00000380666	ENST00000276893		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
In-frame	ENST00000380666	ENST00000381373		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
5CDS-intron	ENST00000380666	ENST00000485617		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000471301	ENST00000276893		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
intron-3CDS	ENST00000471301	ENST00000381373		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
intron-intron	ENST00000471301	ENST00000485617		TCGA	LD	SARC	TCGA-DX-AB2E-01A	BNC2	chr9	16870644	-	UHRF2	chr9	6420912	+
3UTR-3CDS	ENST00000408388	ENST00000377470		TCGA	LD	SARC	TCGA-DX-AB2E-01A	PVT1	chr8	128808254	+	SPATC1	chr8	145096133	+
3UTR-intron	ENST00000408388	ENST00000447830		TCGA	LD	SARC	TCGA-DX-AB2E-01A	PVT1	chr8	128808254	+	SPATC1	chr8	145096133	+
intron-3CDS	ENST00000374706	ENST00000596435		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
intron-3CDS	ENST00000374706	ENST00000344019		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
intron-3CDS	ENST00000374706	ENST00000597551		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
intron-5UTR	ENST00000374706	ENST00000204637		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
intron-5UTR	ENST00000374706	ENST00000600429		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
intron-5UTR	ENST00000374706	ENST00000594009		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
intron-5UTR	ENST00000374706	ENST00000595510		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-3CDS	ENST00000265375	ENST00000596435		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-3CDS	ENST00000265375	ENST00000344019		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-3CDS	ENST00000265375	ENST00000597551		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-5UTR	ENST00000265375	ENST00000204637		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-5UTR	ENST00000265375	ENST00000600429		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-5UTR	ENST00000265375	ENST00000594009		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-5UTR	ENST00000265375	ENST00000595510		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
Frame-shit	ENST00000339497	ENST00000596435		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
Frame-shit	ENST00000339497	ENST00000344019		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
Frame-shit	ENST00000339497	ENST00000597551		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000339497	ENST00000204637		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000339497	ENST00000600429		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000339497	ENST00000594009		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000339497	ENST00000595510		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
Frame-shit	ENST00000374704	ENST00000596435		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
Frame-shit	ENST00000374704	ENST00000344019		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
Frame-shit	ENST00000374704	ENST00000597551		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000374704	ENST00000204637		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000374704	ENST00000600429		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000374704	ENST00000594009		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5CDS-5UTR	ENST00000374704	ENST00000595510		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-3CDS	ENST00000492478	ENST00000596435		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-3CDS	ENST00000492478	ENST00000344019		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-3CDS	ENST00000492478	ENST00000597551		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-5UTR	ENST00000492478	ENST00000204637		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-5UTR	ENST00000492478	ENST00000600429		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-5UTR	ENST00000492478	ENST00000594009		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
3UTR-5UTR	ENST00000492478	ENST00000595510		TCGA	LD	SARC	TCGA-DX-AB2F-01A	CCNY	chr10	35626135	+	FLT3LG	chr19	49979402	+
5UTR-3CDS	ENST00000367604	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000367604	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000367604	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000367604	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000367603	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000367603	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000367603	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000367603	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000012134	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000012134	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000012134	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000012134	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000474532	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000474532	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000474532	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000474532	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB2F-01A	HIVEP2	chr6	143158072	-	MYRFL	chr12	70320351	+
5CDS-5UTR	ENST00000266674	ENST00000393330		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000247829		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000546561		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000552128		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000266674	ENST00000552786		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000536515	ENST00000393330		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000247829		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000546561		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000552128		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000536515	ENST00000552786		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000540815	ENST00000393330		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000247829		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000546561		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000552128		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000540815	ENST00000552786		TCGA	LD	SARC	TCGA-DX-AB2F-01A	LGR5	chr12	71834072	+	TSPAN8	chr12	71676599	-
Frame-shit	ENST00000368468	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	COX7B	chrX	77160681	+
5CDS-intron	ENST00000368468	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	COX7B	chrX	77160681	+
Frame-shit	ENST00000368466	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	COX7B	chrX	77160681	+
5CDS-intron	ENST00000368466	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MAN1A1	chr6	119611848	-	COX7B	chrX	77160681	+
5CDS-5UTR	ENST00000462284	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000462284	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000462284	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000462284	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000356290	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000356290	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000356290	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000356290	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000540827	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000540827	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000540827	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000540827	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000258149	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000258149	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000258149	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000258149	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000428863	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000428863	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000428863	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000428863	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393412	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393412	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000393412	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393412	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000258148	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000258148	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000258148	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000258148	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000544561	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000544561	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000544561	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000544561	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393410	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393410	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000393410	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393410	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393413	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393413	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000393413	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000393413	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000517852	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000517852	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000517852	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000517852	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000545204	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000545204	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000545204	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000545204	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000350057	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000350057	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000350057	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000350057	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000360430	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000360430	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000360430	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000360430	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000299252	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000299252	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000299252	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000299252	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000348801	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000348801	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000348801	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000348801	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000478070	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000478070	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000478070	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000478070	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000544125	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000544125	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-intron	ENST00000544125	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
intron-5UTR	ENST00000544125	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MDM2	chr12	69218431	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000423230	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000423230	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000423230	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000423230	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000398656	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000398656	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000398656	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000398656	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000534366	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000534366	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000534366	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000534366	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000528919	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000528919	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000528919	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000528919	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000326134	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000326134	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000326134	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
5CDS-5UTR	ENST00000326134	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
3UTR-5UTR	ENST00000527071	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
3UTR-5UTR	ENST00000527071	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
3UTR-5UTR	ENST00000527071	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
3UTR-5UTR	ENST00000527071	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
intron-5UTR	ENST00000544576	ENST00000524918		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
intron-5UTR	ENST00000544576	ENST00000313028		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
intron-5UTR	ENST00000544576	ENST00000525773		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
intron-5UTR	ENST00000544576	ENST00000533665		TCGA	LD	SARC	TCGA-DX-AB2F-01A	MROH1	chr8	145255444	+	PARP10	chr8	145060606	-
In-frame	ENST00000536525	ENST00000360469		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000536525	ENST00000543233		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000397909	ENST00000360469		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000397909	ENST00000543233		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000228327	ENST00000360469		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000228327	ENST00000543233		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000266692	ENST00000360469		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
In-frame	ENST00000266692	ENST00000543233		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
intron-3CDS	ENST00000552300	ENST00000360469		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
intron-3CDS	ENST00000552300	ENST00000543233		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
intron-3CDS	ENST00000541270	ENST00000360469		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
intron-3CDS	ENST00000541270	ENST00000543233		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78553066	+	CDH4	chr20	60469966	+
5CDS-5UTR	ENST00000536525	ENST00000373304		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000536525	ENST00000493254		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000397909	ENST00000373304		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000397909	ENST00000493254		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000228327	ENST00000373304		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000228327	ENST00000493254		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000266692	ENST00000373304		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000266692	ENST00000493254		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
intron-5UTR	ENST00000552300	ENST00000373304		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
intron-5UTR	ENST00000552300	ENST00000493254		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
intron-5UTR	ENST00000541270	ENST00000373304		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
intron-5UTR	ENST00000541270	ENST00000493254		TCGA	LD	SARC	TCGA-DX-AB2F-01A	NAV3	chr12	78452895	+	CYSLTR1	chrX	77582936	-
5CDS-5UTR	ENST00000552285	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-3UTR	ENST00000552285	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-5UTR	ENST00000315970	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-3UTR	ENST00000315970	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-5UTR	ENST00000439210	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-3UTR	ENST00000439210	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-5UTR	ENST00000389146	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-3UTR	ENST00000389146	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-5UTR	ENST00000413095	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-3UTR	ENST00000413095	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-5UTR	ENST00000551035	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-3UTR	ENST00000551035	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-5UTR	ENST00000435406	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-3UTR	ENST00000435406	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-5UTR	ENST00000257966	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-3UTR	ENST00000257966	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-5UTR	ENST00000389142	ENST00000481445		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
5CDS-3UTR	ENST00000389142	ENST00000475465		TCGA	LD	SARC	TCGA-DX-AB2F-01A	OS9	chr12	58090156	+	COX7B	chrX	77154974	+
intron-5UTR	ENST00000413953	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000413953	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000413953	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000413953	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000413953	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-intron	ENST00000347140	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-intron	ENST00000347140	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-intron	ENST00000347140	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000347140	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000358907	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000358907	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000358907	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000358907	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-intron	ENST00000402412	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-intron	ENST00000402412	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-intron	ENST00000402412	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
5UTR-5UTR	ENST00000402412	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000441731	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000441731	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000441731	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000441731	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000403821	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000403821	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000403821	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000403821	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000250559		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000393436		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000341355		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000537460		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000546843	ENST00000463493		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000450214		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000546843	ENST00000543393		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-intron	ENST00000546843	ENST00000378985		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000540209		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000539091		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000542145		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000543697		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
intron-5UTR	ENST00000546843	ENST00000541216		TCGA	LD	SARC	TCGA-DX-AB2F-01A	R3HDM2	chr12	57789532	-	RAP1B	chr12	69042479	+
Frame-shit	ENST00000550746	ENST00000366882		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000550746	ENST00000354448		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000550746	ENST00000539869		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000550746	ENST00000535229		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000319106	ENST00000366882		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000319106	ENST00000354448		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000319106	ENST00000539869		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000319106	ENST00000535229		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000485960	ENST00000366882		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000485960	ENST00000354448		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000485960	ENST00000539869		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000485960	ENST00000535229		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5UTR-3CDS	ENST00000393309	ENST00000366882		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5UTR-3CDS	ENST00000393309	ENST00000354448		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5UTR-3CDS	ENST00000393309	ENST00000539869		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5UTR-intron	ENST00000393309	ENST00000535229		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
intron-3CDS	ENST00000548679	ENST00000366882		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
intron-3CDS	ENST00000548679	ENST00000354448		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
intron-3CDS	ENST00000548679	ENST00000539869		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
intron-intron	ENST00000548679	ENST00000535229		TCGA	LD	SARC	TCGA-DX-AB2F-01A	TBC1D15	chr12	72274387	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000367463	ENST00000373316		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
5CDS-intron	ENST00000367463	ENST00000442431		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
5CDS-intron	ENST00000367463	ENST00000537456		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
5CDS-intron	ENST00000367463	ENST00000476531		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
intron-intron	ENST00000466695	ENST00000373316		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
intron-intron	ENST00000466695	ENST00000442431		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
intron-intron	ENST00000466695	ENST00000537456		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
intron-intron	ENST00000466695	ENST00000476531		TCGA	LD	SARC	TCGA-DX-AB2F-01A	UST	chr6	149285699	+	PGK1	chrX	77352150	+
5UTR-3CDS	ENST00000262053	ENST00000283228		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
5UTR-3CDS	ENST00000262053	ENST00000440835		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
5UTR-5UTR	ENST00000262053	ENST00000537619		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
5UTR-5UTR	ENST00000262053	ENST00000378778		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
5UTR-5UTR	ENST00000262053	ENST00000342084		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
5UTR-5UTR	ENST00000262053	ENST00000549308		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
intron-3CDS	ENST00000539132	ENST00000283228		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
intron-3CDS	ENST00000539132	ENST00000440835		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
intron-5UTR	ENST00000539132	ENST00000537619		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
intron-5UTR	ENST00000539132	ENST00000378778		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
intron-5UTR	ENST00000539132	ENST00000342084		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
intron-5UTR	ENST00000539132	ENST00000549308		TCGA	LD	SARC	TCGA-DX-AB2G-01A	ATF1	chr12	51158090	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000548256	ENST00000548553		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5CDS-intron	ENST00000548256	ENST00000332160		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5UTR-5UTR	ENST00000551420	ENST00000548553		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5UTR-intron	ENST00000551420	ENST00000332160		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5CDS-5UTR	ENST00000300209	ENST00000548553		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5CDS-intron	ENST00000300209	ENST00000332160		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
intron-5UTR	ENST00000552307	ENST00000548553		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
intron-intron	ENST00000552307	ENST00000332160		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5CDS-5UTR	ENST00000333012	ENST00000548553		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5CDS-intron	ENST00000333012	ENST00000332160		TCGA	LD	SARC	TCGA-DX-AB2G-01A	METTL21B	chr12	58166911	+	METTL7A	chr12	51318450	+
5CDS-5UTR	ENST00000552285	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000552285	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000552285	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000552285	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000315970	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000315970	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000315970	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000315970	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000439210	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000439210	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000439210	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000439210	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000389146	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000389146	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000389146	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000389146	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000413095	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000413095	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000413095	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000413095	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000551035	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000551035	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000551035	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000551035	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000435406	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000435406	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000435406	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000435406	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000257966	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000257966	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000257966	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000257966	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000389142	ENST00000299293		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000389142	ENST00000549921		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-intron	ENST00000389142	ENST00000550389		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
5CDS-5UTR	ENST00000389142	ENST00000397997		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58088106	+	FRS2	chr12	69924645	+
In-frame	ENST00000552285	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000552285	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000315970	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000315970	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000439210	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000439210	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000389146	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000389146	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
intron-3CDS	ENST00000413095	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
intron-3CDS	ENST00000413095	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
intron-3CDS	ENST00000551035	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
intron-3CDS	ENST00000551035	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
intron-3CDS	ENST00000435406	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
intron-3CDS	ENST00000435406	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000257966	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000257966	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000389142	ENST00000247843		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
In-frame	ENST00000389142	ENST00000548020		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OS9	chr12	58090156	+	YEATS4	chr12	69764486	+
Frame-shit	ENST00000547103	ENST00000548058		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
Frame-shit	ENST00000547103	ENST00000261206		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
Frame-shit	ENST00000547103	ENST00000548324		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
Frame-shit	ENST00000458043	ENST00000548058		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
Frame-shit	ENST00000458043	ENST00000261206		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
Frame-shit	ENST00000458043	ENST00000548324		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
intron-3CDS	ENST00000546620	ENST00000548058		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
intron-3CDS	ENST00000546620	ENST00000261206		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
intron-3CDS	ENST00000546620	ENST00000548324		TCGA	LD	SARC	TCGA-DX-AB2G-01A	OTOGL	chr12	80699475	+	ACSS3	chr12	81610680	+
intron-3CDS	ENST00000367584	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2G-01A	PHACTR2	chr6	143999346	+	IL26	chr12	68595863	-
intron-3CDS	ENST00000427704	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2G-01A	PHACTR2	chr6	143999346	+	IL26	chr12	68595863	-
intron-3CDS	ENST00000305766	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2G-01A	PHACTR2	chr6	143999346	+	IL26	chr12	68595863	-
Frame-shit	ENST00000440869	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2G-01A	PHACTR2	chr6	143999346	+	IL26	chr12	68595863	-
Frame-shit	ENST00000367582	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2G-01A	PHACTR2	chr6	143999346	+	IL26	chr12	68595863	-
Frame-shit	ENST00000397980	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2G-01A	PHACTR2	chr6	143999346	+	IL26	chr12	68595863	-
Frame-shit	ENST00000300134	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
5CDS-intron	ENST00000300134	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
Frame-shit	ENST00000538913	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
5CDS-intron	ENST00000538913	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
Frame-shit	ENST00000543873	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
5CDS-intron	ENST00000543873	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
Frame-shit	ENST00000556155	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
5CDS-intron	ENST00000556155	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
Frame-shit	ENST00000537215	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
5CDS-intron	ENST00000537215	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
In-frame	ENST00000454075	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
5CDS-intron	ENST00000454075	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB2G-01A	STAT6	chr12	57498247	-	PTPRQ	chr12	81007371	+
Frame-shit	ENST00000333972	ENST00000331366		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
In-frame	ENST00000333972	ENST00000538596		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000333972	ENST00000546603		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000333972	ENST00000360449		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
Frame-shit	ENST00000286494	ENST00000331366		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
In-frame	ENST00000286494	ENST00000538596		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000286494	ENST00000546603		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
5CDS-5UTR	ENST00000286494	ENST00000360449		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
intron-3CDS	ENST00000477314	ENST00000331366		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
intron-3CDS	ENST00000477314	ENST00000538596		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
intron-5UTR	ENST00000477314	ENST00000546603		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
intron-5UTR	ENST00000477314	ENST00000360449		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ARHGEF25	chr12	58008183	+	CPNE8	chr12	39047872	-
5CDS-intron	ENST00000398309	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398309	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000376104	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000418306	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000280241	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000543673	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000376106	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000330014	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5UTR-intron	ENST00000537455	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000524982	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000532653	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000531015	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
5CDS-intron	ENST00000398301	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000426717	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000404783	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000398304	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000530800	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000395487		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000429094		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000551601		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000452445		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000549027		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000333837		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000437801		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000547172		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
intron-intron	ENST00000472545	ENST00000548826		TCGA	LD	SARC	TCGA-DX-AB2H-01A	DLG2	chr11	83962281	-	NELL2	chr12	45275622	-
3UTR-5UTR	ENST00000403681	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000403681	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000403681	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
3UTR-5UTR	ENST00000403681	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541363	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541363	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541363	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000541363	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393577	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393577	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393577	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393577	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393578	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393578	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393578	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000393578	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000425208	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000425208	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000425208	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000425208	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000536545	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000536545	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000536545	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000536545	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000354636	ENST00000393249		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000354636	ENST00000261183		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000354636	ENST00000393250		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
intron-5UTR	ENST00000354636	ENST00000552178		TCGA	LD	SARC	TCGA-DX-AB2H-01A	HMGA2	chr12	66357152	+	OSBPL8	chr12	76881398	-
5CDS-intron	ENST00000258111	ENST00000454784		TCGA	LD	SARC	TCGA-DX-AB2H-01A	KCNMB4	chr12	70794116	+	MUC19	chr12	40887749	+
5CDS-intron	ENST00000258111	ENST00000474954		TCGA	LD	SARC	TCGA-DX-AB2H-01A	KCNMB4	chr12	70794116	+	MUC19	chr12	40887749	+
5UTR-3CDS	ENST00000407073	ENST00000264111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-3CDS	ENST00000407073	ENST00000397081		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-3CDS	ENST00000407073	ENST00000409036		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-3CDS	ENST00000407073	ENST00000397087		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-3CDS	ENST00000407073	ENST00000538974		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-3CDS	ENST00000407073	ENST00000540783		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-3CDS	ENST00000407073	ENST00000539331		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-intron	ENST00000407073	ENST00000473043		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
5UTR-intron	ENST00000407073	ENST00000535187		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000264111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000397081		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000409036		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000397087		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000538974		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000540783		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000478804	ENST00000539331		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-intron	ENST00000478804	ENST00000473043		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-intron	ENST00000478804	ENST00000535187		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000264111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000397081		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000409036		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000397087		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000538974		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000540783		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-3CDS	ENST00000404807	ENST00000539331		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-intron	ENST00000404807	ENST00000473043		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
intron-intron	ENST00000404807	ENST00000535187		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MBD5	chr2	148779253	+	RAPGEF4	chr2	173861194	+
In-frame	ENST00000552032	ENST00000258111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MYRFL	chr12	70321528	+	KCNMB4	chr12	70824265	+
In-frame	ENST00000547771	ENST00000258111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MYRFL	chr12	70321528	+	KCNMB4	chr12	70824265	+
5UTR-3CDS	ENST00000299350	ENST00000258111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MYRFL	chr12	70321528	+	KCNMB4	chr12	70824265	+
intron-3CDS	ENST00000535034	ENST00000258111		TCGA	LD	SARC	TCGA-DX-AB2H-01A	MYRFL	chr12	70321528	+	KCNMB4	chr12	70824265	+
Frame-shit	ENST00000261180	ENST00000261674		TCGA	LD	SARC	TCGA-DX-AB2H-01A	TRHDE	chr12	72969322	+	SFSWAP	chr12	132249001	+
Frame-shit	ENST00000261180	ENST00000541286		TCGA	LD	SARC	TCGA-DX-AB2H-01A	TRHDE	chr12	72969322	+	SFSWAP	chr12	132249001	+
5CDS-intron	ENST00000261180	ENST00000539506		TCGA	LD	SARC	TCGA-DX-AB2H-01A	TRHDE	chr12	72969322	+	SFSWAP	chr12	132249001	+
3UTR-3CDS	ENST00000549138	ENST00000261674		TCGA	LD	SARC	TCGA-DX-AB2H-01A	TRHDE	chr12	72969322	+	SFSWAP	chr12	132249001	+
3UTR-3CDS	ENST00000549138	ENST00000541286		TCGA	LD	SARC	TCGA-DX-AB2H-01A	TRHDE	chr12	72969322	+	SFSWAP	chr12	132249001	+
3UTR-intron	ENST00000549138	ENST00000539506		TCGA	LD	SARC	TCGA-DX-AB2H-01A	TRHDE	chr12	72969322	+	SFSWAP	chr12	132249001	+
intron-5UTR	ENST00000378743	ENST00000257904		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000378743	ENST00000312990		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-intron	ENST00000378743	ENST00000549606		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000378743	ENST00000540325		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000378743	ENST00000551888		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000548100	ENST00000257904		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000548100	ENST00000312990		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-intron	ENST00000548100	ENST00000549606		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000548100	ENST00000540325		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000548100	ENST00000551888		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000552037	ENST00000257904		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000552037	ENST00000312990		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-intron	ENST00000552037	ENST00000549606		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000552037	ENST00000540325		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000552037	ENST00000551888		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549407	ENST00000257904		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549407	ENST00000312990		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-intron	ENST00000549407	ENST00000549606		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549407	ENST00000540325		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000549407	ENST00000551888		TCGA	LD	SARC	TCGA-DX-AB2H-01A	ZFC3H1	chr12	72054069	-	CDK4	chr12	58145519	-
intron-3CDS	ENST00000264956	ENST00000262096		TCGA	LD	SARC	TCGA-DX-AB2O-01A	EVC	chr4	5789351	+	ZDHHC2	chr8	17065469	+
intron-3CDS	ENST00000382674	ENST00000262096		TCGA	LD	SARC	TCGA-DX-AB2O-01A	EVC	chr4	5789351	+	ZDHHC2	chr8	17065469	+
intron-3CDS	ENST00000509451	ENST00000262096		TCGA	LD	SARC	TCGA-DX-AB2O-01A	EVC	chr4	5789351	+	ZDHHC2	chr8	17065469	+
intron-3CDS	ENST00000515113	ENST00000262096		TCGA	LD	SARC	TCGA-DX-AB2O-01A	EVC	chr4	5789351	+	ZDHHC2	chr8	17065469	+
5CDS-5UTR	ENST00000321662	ENST00000298119		TCGA	LD	SARC	TCGA-DX-AB2O-01A	GPR137C	chr14	53020309	+	LRFN5	chr14	42236057	+
5CDS-3UTR	ENST00000321662	ENST00000555279		TCGA	LD	SARC	TCGA-DX-AB2O-01A	GPR137C	chr14	53020309	+	LRFN5	chr14	42236057	+
5CDS-5UTR	ENST00000321662	ENST00000554120		TCGA	LD	SARC	TCGA-DX-AB2O-01A	GPR137C	chr14	53020309	+	LRFN5	chr14	42236057	+
5CDS-5UTR	ENST00000321662	ENST00000554171		TCGA	LD	SARC	TCGA-DX-AB2O-01A	GPR137C	chr14	53020309	+	LRFN5	chr14	42236057	+
Frame-shit	ENST00000341500	ENST00000305768		TCGA	LD	SARC	TCGA-DX-AB2O-01A	INSR	chr19	7267356	-	CEP89	chr19	33370284	-
5CDS-intron	ENST00000341500	ENST00000590597		TCGA	LD	SARC	TCGA-DX-AB2O-01A	INSR	chr19	7267356	-	CEP89	chr19	33370284	-
5CDS-intron	ENST00000341500	ENST00000591863		TCGA	LD	SARC	TCGA-DX-AB2O-01A	INSR	chr19	7267356	-	CEP89	chr19	33370284	-
Frame-shit	ENST00000302850	ENST00000305768		TCGA	LD	SARC	TCGA-DX-AB2O-01A	INSR	chr19	7267356	-	CEP89	chr19	33370284	-
5CDS-intron	ENST00000302850	ENST00000590597		TCGA	LD	SARC	TCGA-DX-AB2O-01A	INSR	chr19	7267356	-	CEP89	chr19	33370284	-
5CDS-intron	ENST00000302850	ENST00000591863		TCGA	LD	SARC	TCGA-DX-AB2O-01A	INSR	chr19	7267356	-	CEP89	chr19	33370284	-
5CDS-5UTR	ENST00000376030	ENST00000477047		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-5UTR	ENST00000376030	ENST00000274432		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-intron	ENST00000376030	ENST00000395899		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-5UTR	ENST00000503743	ENST00000477047		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-5UTR	ENST00000503743	ENST00000274432		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-intron	ENST00000503743	ENST00000395899		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-5UTR	ENST00000422387	ENST00000477047		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-5UTR	ENST00000422387	ENST00000274432		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5CDS-intron	ENST00000422387	ENST00000395899		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-5UTR	ENST00000361144	ENST00000477047		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-5UTR	ENST00000361144	ENST00000274432		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-intron	ENST00000361144	ENST00000395899		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-5UTR	ENST00000400798	ENST00000477047		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-5UTR	ENST00000400798	ENST00000274432		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-intron	ENST00000400798	ENST00000395899		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-5UTR	ENST00000400797	ENST00000477047		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-5UTR	ENST00000400797	ENST00000274432		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
intron-intron	ENST00000400797	ENST00000395899		TCGA	LD	SARC	TCGA-DX-AB2O-01A	KAZN	chr1	14925719	+	SPATA9	chr5	94999752	-
5UTR-5UTR	ENST00000193029	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5UTR-intron	ENST00000193029	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5UTR-5UTR	ENST00000193029	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-5UTR	ENST00000522874	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-intron	ENST00000522874	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-5UTR	ENST00000522874	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-5UTR	ENST00000361847	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-intron	ENST00000361847	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-5UTR	ENST00000361847	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-5UTR	ENST00000524214	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-intron	ENST00000524214	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5CDS-5UTR	ENST00000524214	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000561150	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000561150	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000561150	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000517966	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000517966	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000517966	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000523231	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000523231	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000523231	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000524370	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000524370	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000524370	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000522867	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000522867	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000522867	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000520266	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000520266	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000520266	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000519058	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000519058	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000519058	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000522534	ENST00000371007		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-intron	ENST00000522534	ENST00000371006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
intron-5UTR	ENST00000522534	ENST00000544837		TCGA	LD	SARC	TCGA-DX-AB2O-01A	MOK	chr14	102717149	-	C1orf141	chr1	67596910	-
5UTR-intron	ENST00000327134	ENST00000448637		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PAK2	chr3	196467028	+	LPP	chr3	188477901	+
5UTR-intron	ENST00000327134	ENST00000312675		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PAK2	chr3	196467028	+	LPP	chr3	188477901	+
5UTR-intron	ENST00000327134	ENST00000543006		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PAK2	chr3	196467028	+	LPP	chr3	188477901	+
5UTR-3UTR	ENST00000327134	ENST00000471917		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PAK2	chr3	196467028	+	LPP	chr3	188477901	+
5CDS-intron	ENST00000261313	ENST00000536742		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000261313	ENST00000327554		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000261313	ENST00000539847		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
5CDS-intron	ENST00000261313	ENST00000546345		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
3UTR-intron	ENST00000542939	ENST00000536742		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
3UTR-intron	ENST00000542939	ENST00000327554		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
3UTR-intron	ENST00000542939	ENST00000539847		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
3UTR-intron	ENST00000542939	ENST00000546345		TCGA	LD	SARC	TCGA-DX-AB2O-01A	PEBP1	chr12	118577356	+	CCDC60	chr12	119926564	+
5CDS-5UTR	ENST00000367262	ENST00000371946		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000367262	ENST00000371945		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000367262	ENST00000341183		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000367262	ENST00000428112		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000367262	ENST00000545730		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000367262	ENST00000465783		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000367262	ENST00000525888		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-intron	ENST00000367262	ENST00000371944		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RABIF	chr1	202858101	-	MKNK1	chr1	47059952	-
5CDS-5UTR	ENST00000325954	ENST00000280557		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RNF10	chr12	120990501	+	DENR	chr12	123238240	+
5CDS-5UTR	ENST00000325954	ENST00000455982		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RNF10	chr12	120990501	+	DENR	chr12	123238240	+
5CDS-5UTR	ENST00000413266	ENST00000280557		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RNF10	chr12	120990501	+	DENR	chr12	123238240	+
5CDS-5UTR	ENST00000413266	ENST00000455982		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RNF10	chr12	120990501	+	DENR	chr12	123238240	+
intron-5UTR	ENST00000542701	ENST00000280557		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RNF10	chr12	120990501	+	DENR	chr12	123238240	+
intron-5UTR	ENST00000542701	ENST00000455982		TCGA	LD	SARC	TCGA-DX-AB2O-01A	RNF10	chr12	120990501	+	DENR	chr12	123238240	+
intron-3CDS	ENST00000376030	ENST00000369409		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000376030	ENST00000369407		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-intron	ENST00000376030	ENST00000482968		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000503743	ENST00000369409		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000503743	ENST00000369407		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-intron	ENST00000503743	ENST00000482968		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000422387	ENST00000369409		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000422387	ENST00000369407		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-intron	ENST00000422387	ENST00000482968		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000361144	ENST00000369409		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000361144	ENST00000369407		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-intron	ENST00000361144	ENST00000482968		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000400798	ENST00000369409		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000400798	ENST00000369407		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-intron	ENST00000400798	ENST00000482968		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000400797	ENST00000369409		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-3CDS	ENST00000400797	ENST00000369407		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
intron-intron	ENST00000400797	ENST00000482968		TCGA	LD	SARC	TCGA-DX-AB2P-01A	KAZN	chr1	14507087	+	PHGDH	chr1	120263793	+
In-frame	ENST00000336735	ENST00000549115		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
In-frame	ENST00000336735	ENST00000607599		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
In-frame	ENST00000336735	ENST00000548752		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
In-frame	ENST00000336735	ENST00000359118		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
In-frame	ENST00000336735	ENST00000552002		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
intron-3CDS	ENST00000555824	ENST00000549115		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
intron-3CDS	ENST00000555824	ENST00000607599		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
intron-3CDS	ENST00000555824	ENST00000548752		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
intron-3CDS	ENST00000555824	ENST00000359118		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
intron-3CDS	ENST00000555824	ENST00000552002		TCGA	LD	SARC	TCGA-DX-AB2P-01A	SEL1L	chr14	81950569	-	CHURC1	chr14	65390709	+
5UTR-3CDS	ENST00000378330	ENST00000374325		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000378330	ENST00000449358		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000378330	ENST00000374323		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000378330	ENST00000503753		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000378330	ENST00000374321		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-3CDS	ENST00000301030	ENST00000374325		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000301030	ENST00000449358		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000301030	ENST00000374323		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000301030	ENST00000503753		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5UTR-intron	ENST00000301030	ENST00000374321		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-3CDS	ENST00000563291	ENST00000374325		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000563291	ENST00000449358		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000563291	ENST00000374323		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000563291	ENST00000503753		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000563291	ENST00000374321		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-3CDS	ENST00000567736	ENST00000374325		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000567736	ENST00000449358		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000567736	ENST00000374323		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000567736	ENST00000503753		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
intron-intron	ENST00000567736	ENST00000374321		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	ANKRD11	chr16	89556653	-	SYT15	chr10	46969386	+
5CDS-5UTR	ENST00000262320	ENST00000294256		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000262320	ENST00000377190		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000262320	ENST00000307289		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000262320	ENST00000526060		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-intron	ENST00000262320	ENST00000526121		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000354866	ENST00000294256		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000354866	ENST00000377190		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000354866	ENST00000307289		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-5UTR	ENST00000354866	ENST00000526060		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
5CDS-intron	ENST00000354866	ENST00000526121		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
intron-5UTR	ENST00000481769	ENST00000294256		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
intron-5UTR	ENST00000481769	ENST00000377190		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
intron-5UTR	ENST00000481769	ENST00000307289		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
intron-5UTR	ENST00000481769	ENST00000526060		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
intron-intron	ENST00000481769	ENST00000526121		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	AXIN1	chr16	396148	-	SYVN1	chr11	64901089	-
3UTR-5UTR	ENST00000395290	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
3UTR-5UTR	ENST00000358597	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
3UTR-5UTR	ENST00000395292	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
3UTR-5UTR	ENST00000310513	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
3UTR-5UTR	ENST00000361904	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
5UTR-5UTR	ENST00000539455	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
3UTR-5UTR	ENST00000531165	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
3UTR-5UTR	ENST00000532048	ENST00000518724		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	CELF1	chr11	47493743	-	XKR5	chr8	6669860	-
5CDS-intron	ENST00000311172	ENST00000298784		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000311172	ENST00000298786		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000409314	ENST00000298784		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000409314	ENST00000298786		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000409418	ENST00000298784		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000409418	ENST00000298786		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000458644	ENST00000298784		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000458644	ENST00000298786		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000409853	ENST00000298784		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-intron	ENST00000409853	ENST00000298786		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
intron-intron	ENST00000409263	ENST00000298784		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
intron-intron	ENST00000409263	ENST00000298786		TCGA	LD	SARC	TCGA-DX-AB2Q-01A	FCHSD2	chr11	72695133	-	FAM35A	chr10	88935646	+
5CDS-5UTR	ENST00000299300	ENST00000393330		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000299300	ENST00000247829		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000299300	ENST00000546561		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000299300	ENST00000552128		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000299300	ENST00000552786		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000544368	ENST00000393330		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000544368	ENST00000247829		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000544368	ENST00000546561		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000544368	ENST00000552128		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000544368	ENST00000552786		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-5UTR	ENST00000543146	ENST00000393330		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000543146	ENST00000247829		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000543146	ENST00000546561		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000543146	ENST00000552128		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000543146	ENST00000552786		TCGA	LD	SARC	TCGA-DX-AB2S-01A	CCT2	chr12	69986883	+	TSPAN8	chr12	71676599	-
5CDS-3UTR	ENST00000471642	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000471642	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000471642	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000471642	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000471642	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000368336	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000368336	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000368336	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000368336	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000368336	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000343043	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000343043	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000343043	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000343043	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000343043	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
3UTR-3UTR	ENST00000496863	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
3UTR-3UTR	ENST00000496863	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
3UTR-3UTR	ENST00000496863	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
3UTR-intron	ENST00000496863	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
3UTR-intron	ENST00000496863	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000535183	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000535183	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000535183	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000535183	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000535183	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000421487	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000421487	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-3UTR	ENST00000421487	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000421487	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
5CDS-intron	ENST00000421487	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
intron-3UTR	ENST00000465375	ENST00000492220		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
intron-3UTR	ENST00000465375	ENST00000401000		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
intron-3UTR	ENST00000465375	ENST00000539519		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
intron-intron	ENST00000465375	ENST00000369067		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
intron-intron	ENST00000465375	ENST00000369068		TCGA	LD	SARC	TCGA-DX-AB2S-01A	DAP3	chr1	155695202	+	RPRD2	chr1	150437003	+
Frame-shit	ENST00000369026	ENST00000398016		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
Frame-shit	ENST00000369026	ENST00000359742		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
Frame-shit	ENST00000369026	ENST00000286445		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000369026	ENST00000542021		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000464132	ENST00000398016		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000464132	ENST00000359742		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000464132	ENST00000286445		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
intron-intron	ENST00000464132	ENST00000542021		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
Frame-shit	ENST00000307940	ENST00000398016		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
Frame-shit	ENST00000307940	ENST00000359742		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
Frame-shit	ENST00000307940	ENST00000286445		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000307940	ENST00000542021		TCGA	LD	SARC	TCGA-DX-AB2S-01A	MCL1	chr1	150551319	-	GRIP1	chr12	66990707	-
In-frame	ENST00000536525	ENST00000549396		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000536525	ENST00000550584		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000536525	ENST00000549325		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000545296		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000550359		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000407050		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000333447		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000548586		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000443686		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000536525	ENST00000552948		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000536525	ENST00000541570		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000536525	ENST00000541017		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000397909	ENST00000549396		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000397909	ENST00000550584		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000397909	ENST00000549325		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000545296		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000550359		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000407050		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000333447		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000548586		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000443686		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000397909	ENST00000552948		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000397909	ENST00000541570		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000397909	ENST00000541017		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000228327	ENST00000549396		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000228327	ENST00000550584		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000228327	ENST00000549325		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000545296		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000550359		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000407050		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000333447		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000548586		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000443686		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000228327	ENST00000552948		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000228327	ENST00000541570		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000228327	ENST00000541017		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000266692	ENST00000549396		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000266692	ENST00000550584		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
In-frame	ENST00000266692	ENST00000549325		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000545296		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000550359		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000407050		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000333447		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000548586		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000443686		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-5UTR	ENST00000266692	ENST00000552948		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000266692	ENST00000541570		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5CDS-intron	ENST00000266692	ENST00000541017		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-3CDS	ENST00000552300	ENST00000549396		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-3CDS	ENST00000552300	ENST00000550584		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-3CDS	ENST00000552300	ENST00000549325		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000545296		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000550359		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000407050		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000333447		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000548586		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000443686		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000552300	ENST00000552948		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-intron	ENST00000552300	ENST00000541570		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-intron	ENST00000552300	ENST00000541017		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-3CDS	ENST00000541270	ENST00000549396		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-3CDS	ENST00000541270	ENST00000550584		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-3CDS	ENST00000541270	ENST00000549325		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000545296		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000550359		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000407050		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000333447		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000548586		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000443686		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-5UTR	ENST00000541270	ENST00000552948		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-intron	ENST00000541270	ENST00000541570		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
intron-intron	ENST00000541270	ENST00000541017		TCGA	LD	SARC	TCGA-DX-AB2S-01A	NAV3	chr12	78553066	+	PPFIA2	chr12	81839499	-
5UTR-3CDS	ENST00000393330	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71671131	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000247829	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71671131	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000546561	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71671131	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000552128	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71671131	-	IL26	chr12	68595863	-
intron-3CDS	ENST00000552786	ENST00000229134		TCGA	LD	SARC	TCGA-DX-AB2S-01A	TSPAN8	chr12	71671131	-	IL26	chr12	68595863	-
Frame-shit	ENST00000380647	ENST00000329286		TCGA	LD	SARC	TCGA-DX-AB2T-01A	CNTLN	chr9	17143374	+	RAB12	chr18	8624936	+
Frame-shit	ENST00000262360	ENST00000329286		TCGA	LD	SARC	TCGA-DX-AB2T-01A	CNTLN	chr9	17143374	+	RAB12	chr18	8624936	+
Frame-shit	ENST00000425824	ENST00000329286		TCGA	LD	SARC	TCGA-DX-AB2T-01A	CNTLN	chr9	17143374	+	RAB12	chr18	8624936	+
Frame-shit	ENST00000380641	ENST00000329286		TCGA	LD	SARC	TCGA-DX-AB2T-01A	CNTLN	chr9	17143374	+	RAB12	chr18	8624936	+
3UTR-3CDS	ENST00000484374	ENST00000329286		TCGA	LD	SARC	TCGA-DX-AB2T-01A	CNTLN	chr9	17143374	+	RAB12	chr18	8624936	+
Frame-shit	ENST00000261326	ENST00000602452		TCGA	LD	SARC	TCGA-DX-AB2T-01A	MOCOS	chr18	33785239	+	MEI4	chr6	78632806	+
intron-3CDS	ENST00000588132	ENST00000602452		TCGA	LD	SARC	TCGA-DX-AB2T-01A	MOCOS	chr18	33785239	+	MEI4	chr6	78632806	+
In-frame	ENST00000375244	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
In-frame	ENST00000375244	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
5CDS-intron	ENST00000375244	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000451343	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000451343	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000451343	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
In-frame	ENST00000375247	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
In-frame	ENST00000375247	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
5CDS-intron	ENST00000375247	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000479795	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000479795	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000479795	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000433037	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000433037	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000433037	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000549232	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000549232	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000549232	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000383159	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000383159	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000383159	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000489006	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000489006	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000489006	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000469250	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000469250	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000469250	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000440248	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000440248	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000440248	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000550212	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000550212	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000550212	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000548649	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000548649	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000548649	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000424718	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000424718	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000424718	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000475986	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000475986	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000475986	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000550539	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000550539	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000550539	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000471059	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000471059	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000471059	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000551808	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000551808	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000551808	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000548628	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000548628	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000548628	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000549652	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000549652	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000549652	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000553092	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000553092	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000553092	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000552665	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000552665	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000552665	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000465958	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000465958	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000465958	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000546684	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000546684	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000546684	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000464376	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000464376	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000464376	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000552149	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000552149	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000552149	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000551201	ENST00000544301		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-3CDS	ENST00000551201	ENST00000224237		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-intron	ENST00000551201	ENST00000485947		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TNXB	chr6	32016140	-	VIM	chr10	17278293	+
intron-5UTR	ENST00000413465	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-3UTR	ENST00000413465	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000413465	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000413465	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000359597	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-3UTR	ENST00000359597	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000359597	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000359597	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000269305	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-3UTR	ENST00000269305	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000269305	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000269305	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000455263	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-3UTR	ENST00000455263	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000455263	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000455263	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000420246	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-3UTR	ENST00000420246	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000420246	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000420246	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000445888	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-3UTR	ENST00000445888	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000445888	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
5UTR-5UTR	ENST00000445888	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000574684	ENST00000591513		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-3UTR	ENST00000574684	ENST00000590423		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000574684	ENST00000253410		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
intron-5UTR	ENST00000574684	ENST00000587021		TCGA	LD	SARC	TCGA-DX-AB2T-01A	TP53	chr17	7590695	-	HIGD1B	chr17	42925470	+
In-frame	ENST00000423312	ENST00000556508		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
In-frame	ENST00000423312	ENST00000453495		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
In-frame	ENST00000423312	ENST00000414716		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
In-frame	ENST00000423312	ENST00000418279		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
5UTR-3CDS	ENST00000315264	ENST00000556508		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
5UTR-3CDS	ENST00000315264	ENST00000453495		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
5UTR-3CDS	ENST00000315264	ENST00000414716		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
5UTR-3CDS	ENST00000315264	ENST00000418279		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIF26A	chr14	104605625	+	CEP170B	chr14	105359860	+
In-frame	ENST00000392272	ENST00000289429		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158226576	+
In-frame	ENST00000368173	ENST00000289429		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158226576	+
5UTR-3CDS	ENST00000360089	ENST00000289429		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158226576	+
In-frame	ENST00000359209	ENST00000289429		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158226576	+
In-frame	ENST00000416935	ENST00000289429		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158226576	+
intron-3CDS	ENST00000368172	ENST00000289429		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1A	chr1	158226576	+
In-frame	ENST00000392272	ENST00000368170		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1C	chr1	158260924	+
In-frame	ENST00000368173	ENST00000368170		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1C	chr1	158260924	+
5UTR-3CDS	ENST00000360089	ENST00000368170		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1C	chr1	158260924	+
In-frame	ENST00000359209	ENST00000368170		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1C	chr1	158260924	+
In-frame	ENST00000416935	ENST00000368170		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1C	chr1	158260924	+
intron-3CDS	ENST00000368172	ENST00000368170		TCGA	LD	SARC	TCGA-DX-AB2V-01A	KIRREL	chr1	157963518	+	CD1C	chr1	158260924	+
5CDS-intron	ENST00000284818	ENST00000521096		TCGA	LD	SARC	TCGA-DX-AB2V-01A	LY96	chr8	74903789	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000284818	ENST00000220822		TCGA	LD	SARC	TCGA-DX-AB2V-01A	LY96	chr8	74903789	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000284818	ENST00000434412		TCGA	LD	SARC	TCGA-DX-AB2V-01A	LY96	chr8	74903789	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000518893	ENST00000521096		TCGA	LD	SARC	TCGA-DX-AB2V-01A	LY96	chr8	74903789	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000518893	ENST00000220822		TCGA	LD	SARC	TCGA-DX-AB2V-01A	LY96	chr8	74903789	+	GDAP1	chr8	75400913	+
5CDS-intron	ENST00000518893	ENST00000434412		TCGA	LD	SARC	TCGA-DX-AB2V-01A	LY96	chr8	74903789	+	GDAP1	chr8	75400913	+
5CDS-3UTR	ENST00000536719	ENST00000253925		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5CDS-intron	ENST00000536719	ENST00000389547		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5CDS-3UTR	ENST00000536719	ENST00000530548		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5CDS-3UTR	ENST00000251968	ENST00000253925		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5CDS-intron	ENST00000251968	ENST00000389547		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5CDS-3UTR	ENST00000251968	ENST00000530548		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
intron-3UTR	ENST00000357193	ENST00000253925		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
intron-intron	ENST00000357193	ENST00000389547		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
intron-3UTR	ENST00000357193	ENST00000530548		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5UTR-3UTR	ENST00000543087	ENST00000253925		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5UTR-intron	ENST00000543087	ENST00000389547		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
5UTR-3UTR	ENST00000543087	ENST00000530548		TCGA	LD	SARC	TCGA-DX-AB2V-01A	TSG101	chr11	18536225	-	PPFIA1	chr11	70229109	+
In-frame	ENST00000399231	ENST00000327171		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399231	ENST00000560031		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399231	ENST00000396509		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399231	ENST00000543495		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399231	ENST00000544523		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399231	ENST00000559454		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
5CDS-3UTR	ENST00000399231	ENST00000561014		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000356338	ENST00000327171		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000356338	ENST00000560031		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000356338	ENST00000396509		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000356338	ENST00000543495		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000356338	ENST00000544523		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000356338	ENST00000559454		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
5CDS-3UTR	ENST00000356338	ENST00000561014		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3CDS	ENST00000358212	ENST00000327171		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3CDS	ENST00000358212	ENST00000560031		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3CDS	ENST00000358212	ENST00000396509		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3CDS	ENST00000358212	ENST00000543495		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3CDS	ENST00000358212	ENST00000544523		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3CDS	ENST00000358212	ENST00000559454		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
intron-3UTR	ENST00000358212	ENST00000561014		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399233	ENST00000327171		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399233	ENST00000560031		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399233	ENST00000396509		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399233	ENST00000543495		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399233	ENST00000544523		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000399233	ENST00000559454		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
5CDS-3UTR	ENST00000399233	ENST00000561014		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000553916	ENST00000327171		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000553916	ENST00000560031		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000553916	ENST00000396509		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000553916	ENST00000543495		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000553916	ENST00000544523		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
In-frame	ENST00000553916	ENST00000559454		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
5CDS-3UTR	ENST00000553916	ENST00000561014		TCGA	LD	SARC	TCGA-DX-AB2W-01A	MYO5A	chr15	52820977	-	GALK2	chr15	49574184	+
Frame-shit	ENST00000308020	ENST00000329962		TCGA	LD	SARC	TCGA-DX-AB2W-01A	PTDSS2	chr11	460288	+	B4GALNT4	chr11	372109	+
intron-3CDS	ENST00000530087	ENST00000329962		TCGA	LD	SARC	TCGA-DX-AB2W-01A	PTDSS2	chr11	460288	+	B4GALNT4	chr11	372109	+
intron-5UTR	ENST00000341217	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000341217	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000341217	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000581407	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000581407	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000581407	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000582266	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000582266	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000582266	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000452648	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000452648	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000452648	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000582059	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000582059	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000582059	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000583953	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000583953	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
intron-5UTR	ENST00000583953	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000577682	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000577682	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000577682	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000583522	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000583522	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000583522	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000581381	ENST00000395319		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000581381	ENST00000395321		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-5UTR	ENST00000581381	ENST00000226253		TCGA	LD	SARC	TCGA-DX-AB2X-01A	FAM222B	chr17	27169700	-	ALDOC	chr17	26902562	-
5UTR-3CDS	ENST00000256413	ENST00000262713		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
5UTR-intron	ENST00000256413	ENST00000397388		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
5UTR-intron	ENST00000256413	ENST00000361265		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
5UTR-3CDS	ENST00000382998	ENST00000262713		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
5UTR-intron	ENST00000382998	ENST00000397388		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
5UTR-intron	ENST00000382998	ENST00000361265		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
intron-3CDS	ENST00000592658	ENST00000262713		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
intron-intron	ENST00000592658	ENST00000397388		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
intron-intron	ENST00000592658	ENST00000361265		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	CTIF	chr18	46065683	+	AJUBA	chr14	23447654	-
intron-3CDS	ENST00000361417	ENST00000193403		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000361417	ENST00000394419		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000361417	ENST00000438964		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000361417	ENST00000376839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000361417	ENST00000538545		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-intron	ENST00000361417	ENST00000554508		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000356063	ENST00000193403		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000356063	ENST00000394419		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000356063	ENST00000438964		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000356063	ENST00000376839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000356063	ENST00000538545		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-intron	ENST00000356063	ENST00000554508		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000534672	ENST00000193403		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000534672	ENST00000394419		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000534672	ENST00000438964		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000534672	ENST00000376839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000534672	ENST00000538545		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-intron	ENST00000534672	ENST00000554508		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000527898	ENST00000193403		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000527898	ENST00000394419		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000527898	ENST00000438964		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000527898	ENST00000376839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000527898	ENST00000538545		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-intron	ENST00000527898	ENST00000554508		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000524713	ENST00000193403		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000524713	ENST00000394419		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-3CDS	ENST00000524713	ENST00000438964		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000524713	ENST00000376839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-5UTR	ENST00000524713	ENST00000538545		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
intron-intron	ENST00000524713	ENST00000554508		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	PHLDB1	chr11	118492253	+	ACTN1	chr14	69392389	-
Frame-shit	ENST00000445299	ENST00000545951		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000445299	ENST00000382839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000445299	ENST00000324666		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000445299	ENST00000502458		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000445299	ENST00000505311		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000323460	ENST00000545951		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000323460	ENST00000382839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000323460	ENST00000324666		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000323460	ENST00000502458		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000323460	ENST00000505311		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000419026	ENST00000545951		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000419026	ENST00000382839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000419026	ENST00000324666		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000419026	ENST00000502458		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
Frame-shit	ENST00000419026	ENST00000505311		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
intron-3CDS	ENST00000489744	ENST00000545951		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
intron-3CDS	ENST00000489744	ENST00000382839		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
intron-3CDS	ENST00000489744	ENST00000324666		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
intron-3CDS	ENST00000489744	ENST00000502458		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
intron-3CDS	ENST00000489744	ENST00000505311		TCGA	LD	SARC	TCGA-DX-AB2Z-01A	SENP5	chr3	196657771	+	FAM193A	chr4	2673848	+
5UTR-3CDS	ENST00000582337	ENST00000204517		TCGA	LD	SARC	TCGA-DX-AB32-01A	ZNF407	chr18	72265173	+	TFAP4	chr16	4312702	-
intron-3CDS	ENST00000309902	ENST00000204517		TCGA	LD	SARC	TCGA-DX-AB32-01A	ZNF407	chr18	72265173	+	TFAP4	chr16	4312702	-
intron-3CDS	ENST00000577538	ENST00000204517		TCGA	LD	SARC	TCGA-DX-AB32-01A	ZNF407	chr18	72265173	+	TFAP4	chr16	4312702	-
intron-3CDS	ENST00000299687	ENST00000204517		TCGA	LD	SARC	TCGA-DX-AB32-01A	ZNF407	chr18	72265173	+	TFAP4	chr16	4312702	-
intron-3CDS	ENST00000584235	ENST00000204517		TCGA	LD	SARC	TCGA-DX-AB32-01A	ZNF407	chr18	72265173	+	TFAP4	chr16	4312702	-
Frame-shit	ENST00000229195	ENST00000321196		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000229195	ENST00000548305		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000229195	ENST00000549919		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000418359	ENST00000321196		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000418359	ENST00000548305		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
Frame-shit	ENST00000418359	ENST00000549919		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000548230	ENST00000321196		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000548230	ENST00000548305		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000548230	ENST00000549919		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000551483	ENST00000321196		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000551483	ENST00000548305		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
intron-3CDS	ENST00000551483	ENST00000549919		TCGA	LD	SARC	TCGA-DX-AB35-01A	CNOT2	chr12	70704797	+	TMTC2	chr12	83358803	+
In-frame	ENST00000248306	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB35-01A	METTL25	chr12	82796909	+	PTPRQ	chr12	81025971	+
5CDS-intron	ENST00000248306	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB35-01A	METTL25	chr12	82796909	+	PTPRQ	chr12	81025971	+
3UTR-3CDS	ENST00000547357	ENST00000266688		TCGA	LD	SARC	TCGA-DX-AB35-01A	METTL25	chr12	82796909	+	PTPRQ	chr12	81025971	+
3UTR-intron	ENST00000547357	ENST00000547485		TCGA	LD	SARC	TCGA-DX-AB35-01A	METTL25	chr12	82796909	+	PTPRQ	chr12	81025971	+
Frame-shit	ENST00000536525	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000536525	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-5UTR	ENST00000536525	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000536525	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000536525	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000397909	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000397909	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-5UTR	ENST00000397909	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000397909	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000397909	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000228327	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000228327	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-5UTR	ENST00000228327	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000228327	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000228327	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000266692	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
Frame-shit	ENST00000266692	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-5UTR	ENST00000266692	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000266692	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-intron	ENST00000266692	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-3CDS	ENST00000552300	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-3CDS	ENST00000552300	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-5UTR	ENST00000552300	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-intron	ENST00000552300	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-intron	ENST00000552300	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-3CDS	ENST00000541270	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-3CDS	ENST00000541270	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-5UTR	ENST00000541270	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-intron	ENST00000541270	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
intron-intron	ENST00000541270	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	NAV3	chr12	78452895	+	FAM19A2	chr12	62148805	-
5CDS-5UTR	ENST00000261234	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5CDS-intron	ENST00000261234	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5CDS-intron	ENST00000261234	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5CDS-intron	ENST00000261234	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5CDS-intron	ENST00000261234	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
intron-5UTR	ENST00000537982	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
intron-intron	ENST00000537982	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
intron-intron	ENST00000537982	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
intron-intron	ENST00000537982	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
intron-intron	ENST00000537982	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5UTR-5UTR	ENST00000537373	ENST00000416284		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5UTR-intron	ENST00000537373	ENST00000551619		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5UTR-intron	ENST00000537373	ENST00000550003		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5UTR-intron	ENST00000537373	ENST00000551449		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
5UTR-intron	ENST00000537373	ENST00000549456		TCGA	LD	SARC	TCGA-DX-AB35-01A	TMEM5	chr12	64196185	+	FAM19A2	chr12	62586024	-
Frame-shit	ENST00000359019	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000359019	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000359019	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000359019	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000334822	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000334822	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000334822	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000334822	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000426126	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000426126	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000426126	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
Frame-shit	ENST00000426126	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000550789	ENST00000552032		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000550789	ENST00000547771		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000550789	ENST00000299350		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000550789	ENST00000535034		TCGA	LD	SARC	TCGA-DX-AB35-01A	ZDHHC17	chr12	77158109	+	MYRFL	chr12	70345893	+
5UTR-3CDS	ENST00000261211	ENST00000355192		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000261211	ENST00000308259		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000261211	ENST00000540804		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000261211	ENST00000535664		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-intron	ENST00000261211	ENST00000538725		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000543119	ENST00000355192		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000543119	ENST00000308259		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000543119	ENST00000540804		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000543119	ENST00000535664		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-intron	ENST00000543119	ENST00000538725		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000542666	ENST00000355192		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000542666	ENST00000308259		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000542666	ENST00000540804		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000542666	ENST00000535664		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-intron	ENST00000542666	ENST00000538725		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
intron-3CDS	ENST00000553042	ENST00000355192		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
intron-3CDS	ENST00000553042	ENST00000308259		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
intron-3CDS	ENST00000553042	ENST00000540804		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
intron-3CDS	ENST00000553042	ENST00000535664		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
intron-intron	ENST00000553042	ENST00000538725		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK17	chr12	96793764	-	MSRB3	chr12	65762778	+
5UTR-3CDS	ENST00000257904	ENST00000324559		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-intron	ENST00000257904	ENST00000532043		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-3CDS	ENST00000312990	ENST00000324559		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-intron	ENST00000312990	ENST00000532043		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-3CDS	ENST00000549606	ENST00000324559		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-intron	ENST00000549606	ENST00000532043		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-3CDS	ENST00000540325	ENST00000324559		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-intron	ENST00000540325	ENST00000532043		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-3CDS	ENST00000551888	ENST00000324559		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
5UTR-intron	ENST00000551888	ENST00000532043		TCGA	LD	SARC	TCGA-DX-AB36-01A	CDK4	chr12	58145958	-	ANO5	chr11	22291858	+
intron-3CDS	ENST00000374866	ENST00000552285		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-3CDS	ENST00000374866	ENST00000315970		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-3CDS	ENST00000374866	ENST00000439210		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-3CDS	ENST00000374866	ENST00000389146		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-intron	ENST00000374866	ENST00000413095		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-intron	ENST00000374866	ENST00000551035		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-intron	ENST00000374866	ENST00000435406		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-intron	ENST00000374866	ENST00000257966		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
intron-intron	ENST00000374866	ENST00000389142		TCGA	LD	SARC	TCGA-DX-AB36-01A	COL5A2	chr2	189897463	-	OS9	chr12	58110482	+
5CDS-5UTR	ENST00000343958	ENST00000489520		TCGA	LD	SARC	TCGA-DX-AB36-01A	FGD6	chr12	95483345	-	RPSAP52	chr12	66152811	-
5CDS-5UTR	ENST00000546711	ENST00000489520		TCGA	LD	SARC	TCGA-DX-AB36-01A	FGD6	chr12	95483345	-	RPSAP52	chr12	66152811	-
intron-5UTR	ENST00000549499	ENST00000489520		TCGA	LD	SARC	TCGA-DX-AB36-01A	FGD6	chr12	95483345	-	RPSAP52	chr12	66152811	-
intron-5UTR	ENST00000550368	ENST00000489520		TCGA	LD	SARC	TCGA-DX-AB36-01A	FGD6	chr12	95483345	-	RPSAP52	chr12	66152811	-
Frame-shit	ENST00000299293	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000299293	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
5CDS-intron	ENST00000299293	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000549921	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000549921	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
5CDS-intron	ENST00000549921	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000550389	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000550389	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
5CDS-intron	ENST00000550389	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000397997	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
Frame-shit	ENST00000397997	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
5CDS-intron	ENST00000397997	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	FRS2	chr12	69968688	+	SLC26A10	chr12	58014125	+
intron-3UTR	ENST00000228495	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000228495	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-intron	ENST00000228495	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000540089	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000540089	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-intron	ENST00000540089	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000424763	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000424763	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-intron	ENST00000424763	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000538161	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000538161	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-intron	ENST00000538161	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000540411	ENST00000320442		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-3UTR	ENST00000540411	ENST00000379218		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
intron-intron	ENST00000540411	ENST00000490243		TCGA	LD	SARC	TCGA-DX-AB36-01A	KCTD10	chr12	109894711	-	SLC26A10	chr12	58019569	+
5CDS-5UTR	ENST00000547103	ENST00000418703		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000547103	ENST00000261740		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000547103	ENST00000392719		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000547103	ENST00000346520		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000547103	ENST00000541794		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000547103	ENST00000536838		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000547103	ENST00000544971		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000547103	ENST00000537083		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000547103	ENST00000536570		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000458043	ENST00000418703		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000458043	ENST00000261740		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000458043	ENST00000392719		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000458043	ENST00000346520		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000458043	ENST00000541794		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000458043	ENST00000536838		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000458043	ENST00000544971		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-intron	ENST00000458043	ENST00000537083		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
5CDS-5UTR	ENST00000458043	ENST00000536570		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-5UTR	ENST00000546620	ENST00000418703		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-5UTR	ENST00000546620	ENST00000261740		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-5UTR	ENST00000546620	ENST00000392719		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-5UTR	ENST00000546620	ENST00000346520		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-intron	ENST00000546620	ENST00000541794		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-intron	ENST00000546620	ENST00000536838		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-intron	ENST00000546620	ENST00000544971		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-intron	ENST00000546620	ENST00000537083		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
intron-5UTR	ENST00000546620	ENST00000536570		TCGA	LD	SARC	TCGA-DX-AB36-01A	OTOGL	chr12	80717620	+	TRPV4	chr12	110252632	-
Frame-shit	ENST00000325083	ENST00000436874		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000325083	ENST00000261219		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
5CDS-3UTR	ENST00000325083	ENST00000356859		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000519253	ENST00000436874		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000519253	ENST00000261219		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
5CDS-3UTR	ENST00000519253	ENST00000356859		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000524226	ENST00000436874		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000524226	ENST00000261219		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
5CDS-3UTR	ENST00000524226	ENST00000356859		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
intron-3CDS	ENST00000518537	ENST00000436874		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
intron-3CDS	ENST00000518537	ENST00000261219		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
intron-3UTR	ENST00000518537	ENST00000356859		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
intron-3CDS	ENST00000518936	ENST00000436874		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
intron-3CDS	ENST00000518936	ENST00000261219		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
intron-3UTR	ENST00000518936	ENST00000356859		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000327578	ENST00000436874		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000327578	ENST00000261219		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
5CDS-3UTR	ENST00000327578	ENST00000356859		TCGA	LD	SARC	TCGA-DX-AB36-01A	PCM1	chr8	17869336	+	VEZT	chr12	95660133	+
Frame-shit	ENST00000261207	ENST00000248306		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
5CDS-3UTR	ENST00000261207	ENST00000547357		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
In-frame	ENST00000450142	ENST00000248306		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
5CDS-3UTR	ENST00000450142	ENST00000547357		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
Frame-shit	ENST00000437004	ENST00000248306		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
5CDS-3UTR	ENST00000437004	ENST00000547357		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
Frame-shit	ENST00000546369	ENST00000248306		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
5CDS-3UTR	ENST00000546369	ENST00000547357		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
In-frame	ENST00000550107	ENST00000248306		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
5CDS-3UTR	ENST00000550107	ENST00000547357		TCGA	LD	SARC	TCGA-DX-AB36-01A	PPP1R12A	chr12	80266588	-	METTL25	chr12	82850506	+
Frame-shit	ENST00000299413	ENST00000524419		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000299413	ENST00000528989		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
Frame-shit	ENST00000299413	ENST00000315571		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
5CDS-3UTR	ENST00000299413	ENST00000529759		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
3UTR-3CDS	ENST00000532066	ENST00000524419		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
3UTR-3CDS	ENST00000532066	ENST00000528989		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
3UTR-3CDS	ENST00000532066	ENST00000315571		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
3UTR-3UTR	ENST00000532066	ENST00000529759		TCGA	LD	SARC	TCGA-DX-AB36-01A	TRIM44	chr11	35756993	+	LDLRAD3	chr11	36248635	+
5CDS-5UTR	ENST00000247843	ENST00000357206		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000247843	ENST00000287727		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000247843	ENST00000371591		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000247843	ENST00000469134		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000548020	ENST00000357206		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000548020	ENST00000287727		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000548020	ENST00000371591		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-intron	ENST00000548020	ENST00000469134		TCGA	LD	SARC	TCGA-DX-AB36-01A	YEATS4	chr12	69753803	+	ZFYVE9	chr1	52682041	+
5CDS-5UTR	ENST00000262096	ENST00000489520		TCGA	LD	SARC	TCGA-DX-AB36-01A	ZDHHC2	chr8	17014362	+	RPSAP52	chr12	66152811	-
In-frame	ENST00000229195	ENST00000429544		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000229195	ENST00000249910		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000229195	ENST00000503197		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000229195	ENST00000393278		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000229195	ENST00000507208		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
5CDS-5UTR	ENST00000229195	ENST00000509587		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000418359	ENST00000429544		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000418359	ENST00000249910		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000418359	ENST00000503197		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000418359	ENST00000393278		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
In-frame	ENST00000418359	ENST00000507208		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
5CDS-5UTR	ENST00000418359	ENST00000509587		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000548230	ENST00000429544		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000548230	ENST00000249910		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000548230	ENST00000503197		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000548230	ENST00000393278		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000548230	ENST00000507208		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-5UTR	ENST00000548230	ENST00000509587		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000551483	ENST00000429544		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000551483	ENST00000249910		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000551483	ENST00000503197		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000551483	ENST00000393278		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-3CDS	ENST00000551483	ENST00000507208		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
intron-5UTR	ENST00000551483	ENST00000509587		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	MBD4	chr3	129152979	-
5CDS-5UTR	ENST00000229195	ENST00000309922		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	TRMT10C	chr3	101283614	+
5CDS-5UTR	ENST00000418359	ENST00000309922		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	TRMT10C	chr3	101283614	+
intron-5UTR	ENST00000548230	ENST00000309922		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	TRMT10C	chr3	101283614	+
intron-5UTR	ENST00000551483	ENST00000309922		TCGA	LD	SARC	TCGA-DX-AB37-01A	CNOT2	chr12	70713144	+	TRMT10C	chr3	101283614	+
In-frame	ENST00000341259	ENST00000545145		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
In-frame	ENST00000341259	ENST00000392561		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
In-frame	ENST00000341259	ENST00000261741		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
5CDS-intron	ENST00000341259	ENST00000553232		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
intron-3CDS	ENST00000538307	ENST00000545145		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
intron-3CDS	ENST00000538307	ENST00000392561		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
intron-3CDS	ENST00000538307	ENST00000261741		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
intron-intron	ENST00000538307	ENST00000553232		TCGA	LD	SARC	TCGA-DX-AB37-01A	SH2B3	chr12	111856681	+	RBM19	chr12	114374941	-
5CDS-intron	ENST00000589222	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000589222	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000589222	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000589222	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000589222	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000407086	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000407086	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000407086	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000407086	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000390652	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000390652	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000390652	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000390652	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000408905	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000408905	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000408905	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000408905	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000588462	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000588462	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-3UTR	ENST00000588462	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-intron	ENST00000588462	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000585744	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000585744	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000585744	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585744	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000588874	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000588874	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000588874	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000588874	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000455406		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000596952		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000415780		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000608579		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000430605		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000586006		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000585812	ENST00000587306		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000585812	ENST00000587066		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000585499		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000585415		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-3UTR	ENST00000585812	ENST00000590186		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000591654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
intron-intron	ENST00000585812	ENST00000608360		TCGA	LD	SARC	TCGA-DX-AB3A-01A	BCAS3	chr17	58786686	+	ZRANB2-AS2	chr1	71929014	+
5CDS-5UTR	ENST00000265085	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000265085	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000265085	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000265085	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000265085	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000265085	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000520867	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000520867	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000520867	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000520867	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000520867	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000520867	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000334035	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000334035	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000334035	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000334035	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000334035	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000334035	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000519835	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000519835	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000519835	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000519835	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000519835	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000519835	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000522336	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000522336	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000522336	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000522336	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000522336	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000522336	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000517880	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000517880	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000517880	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-5UTR	ENST00000517880	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000517880	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
5CDS-intron	ENST00000517880	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
intron-5UTR	ENST00000519467	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
intron-5UTR	ENST00000519467	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
intron-intron	ENST00000519467	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
intron-5UTR	ENST00000519467	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
intron-intron	ENST00000519467	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
intron-intron	ENST00000519467	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CPEB4	chr5	173337607	+	CEP112	chr17	64179425	-
In-frame	ENST00000398073	ENST00000274458		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
In-frame	ENST00000398073	ENST00000515539		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
5CDS-intron	ENST00000398073	ENST00000503424		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
In-frame	ENST00000548823	ENST00000274458		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
In-frame	ENST00000548823	ENST00000515539		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
5CDS-intron	ENST00000548823	ENST00000503424		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
intron-3CDS	ENST00000547701	ENST00000274458		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
intron-3CDS	ENST00000547701	ENST00000515539		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
intron-intron	ENST00000547701	ENST00000503424		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	COMMD10	chr5	115426776	+
Frame-shit	ENST00000398073	ENST00000266674		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000398073	ENST00000536515		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000398073	ENST00000540815		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000548823	ENST00000266674		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000548823	ENST00000536515		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
Frame-shit	ENST00000548823	ENST00000540815		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000547701	ENST00000266674		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000547701	ENST00000536515		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
intron-3CDS	ENST00000547701	ENST00000540815		TCGA	LD	SARC	TCGA-DX-AB3A-01A	CTDSP2	chr12	58240155	-	LGR5	chr12	71898394	+
In-frame	ENST00000251241	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
In-frame	ENST00000251241	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000251241	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000251241	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000251241	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000251241	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
In-frame	ENST00000451169	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
In-frame	ENST00000451169	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000451169	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000451169	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000451169	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
5CDS-intron	ENST00000451169	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
intron-3CDS	ENST00000425628	ENST00000535342		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
intron-3CDS	ENST00000425628	ENST00000392769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
intron-intron	ENST00000425628	ENST00000541355		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
intron-intron	ENST00000425628	ENST00000537949		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
intron-intron	ENST00000425628	ENST00000317442		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
intron-intron	ENST00000425628	ENST00000580482		TCGA	LD	SARC	TCGA-DX-AB3A-01A	DHX40	chr17	57648024	+	CEP112	chr17	64066119	-
Frame-shit	ENST00000539068	ENST00000546373		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000539068	ENST00000551568		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000539068	ENST00000338356		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
5CDS-intron	ENST00000539068	ENST00000549691		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000536438	ENST00000546373		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000536438	ENST00000551568		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000536438	ENST00000338356		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
5CDS-intron	ENST00000536438	ENST00000549691		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000357266	ENST00000546373		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000357266	ENST00000551568		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000357266	ENST00000338356		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
5CDS-intron	ENST00000357266	ENST00000549691		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
intron-3CDS	ENST00000540787	ENST00000546373		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
intron-3CDS	ENST00000540787	ENST00000551568		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
intron-3CDS	ENST00000540787	ENST00000338356		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
intron-intron	ENST00000540787	ENST00000549691		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000542713	ENST00000546373		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000542713	ENST00000551568		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
Frame-shit	ENST00000542713	ENST00000338356		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
5CDS-intron	ENST00000542713	ENST00000549691		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FKBP5	chr6	35610497	-	CPM	chr12	69260828	-
5UTR-intron	ENST00000299293	ENST00000442339		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000299293	ENST00000409004		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000299293	ENST00000409799		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000299293	ENST00000409445		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000299293	ENST00000393284		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000549921	ENST00000442339		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000549921	ENST00000409004		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000549921	ENST00000409799		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000549921	ENST00000409445		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000549921	ENST00000393284		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
intron-intron	ENST00000550389	ENST00000442339		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
intron-intron	ENST00000550389	ENST00000409004		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
intron-intron	ENST00000550389	ENST00000409799		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
intron-intron	ENST00000550389	ENST00000409445		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
intron-intron	ENST00000550389	ENST00000393284		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000397997	ENST00000442339		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000397997	ENST00000409004		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000397997	ENST00000409799		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000397997	ENST00000409445		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
5UTR-intron	ENST00000397997	ENST00000393284		TCGA	LD	SARC	TCGA-DX-AB3A-01A	FRS2	chr12	69925836	+	CAPS2	chr12	75765262	-
3UTR-intron	ENST00000274747	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
3UTR-3UTR	ENST00000274747	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-intron	ENST00000543597	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-3UTR	ENST00000543597	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-intron	ENST00000535061	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-3UTR	ENST00000535061	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
3UTR-intron	ENST00000483634	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
3UTR-3UTR	ENST00000483634	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-intron	ENST00000378353	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-3UTR	ENST00000378353	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-intron	ENST00000378386	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-3UTR	ENST00000378386	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-intron	ENST00000443868	ENST00000393217		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
5CDS-3UTR	ENST00000443868	ENST00000528777		TCGA	LD	SARC	TCGA-DX-AB3A-01A	MRS2	chr6	24418806	+	LRRIQ1	chr12	85656693	+
intron-3CDS	ENST00000274811	ENST00000605096		TCGA	LD	SARC	TCGA-DX-AB3A-01A	RNF44	chr5	175964732	-	MILR1	chr17	62463682	+
5UTR-3CDS	ENST00000537487	ENST00000605096		TCGA	LD	SARC	TCGA-DX-AB3A-01A	RNF44	chr5	175964732	-	MILR1	chr17	62463682	+
intron-3CDS	ENST00000509404	ENST00000605096		TCGA	LD	SARC	TCGA-DX-AB3A-01A	RNF44	chr5	175964732	-	MILR1	chr17	62463682	+
Frame-shit	ENST00000370859	ENST00000312233		TCGA	LD	SARC	TCGA-DX-AB3A-01A	SLC44A5	chr1	75805267	-	GLIS1	chr1	53995625	-
Frame-shit	ENST00000370855	ENST00000312233		TCGA	LD	SARC	TCGA-DX-AB3A-01A	SLC44A5	chr1	75805267	-	GLIS1	chr1	53995625	-
5UTR-3CDS	ENST00000535611	ENST00000312233		TCGA	LD	SARC	TCGA-DX-AB3A-01A	SLC44A5	chr1	75805267	-	GLIS1	chr1	53995625	-
5UTR-3CDS	ENST00000469525	ENST00000312233		TCGA	LD	SARC	TCGA-DX-AB3A-01A	SLC44A5	chr1	75805267	-	GLIS1	chr1	53995625	-
5UTR-3CDS	ENST00000416485	ENST00000371204		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TEN1	chr17	73975592	+	CYP2J2	chr1	60381772	-
5UTR-intron	ENST00000416485	ENST00000492633		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TEN1	chr17	73975592	+	CYP2J2	chr1	60381772	-
5UTR-3CDS	ENST00000397640	ENST00000371204		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TEN1	chr17	73975592	+	CYP2J2	chr1	60381772	-
5UTR-intron	ENST00000397640	ENST00000492633		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TEN1	chr17	73975592	+	CYP2J2	chr1	60381772	-
5UTR-3CDS	ENST00000588202	ENST00000371204		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TEN1	chr17	73975592	+	CYP2J2	chr1	60381772	-
5UTR-intron	ENST00000588202	ENST00000492633		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TEN1	chr17	73975592	+	CYP2J2	chr1	60381772	-
Frame-shit	ENST00000456936	ENST00000329654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
Frame-shit	ENST00000456936	ENST00000371049		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
Frame-shit	ENST00000456936	ENST00000423207		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000456936	ENST00000371048		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000456936	ENST00000371045		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
5CDS-intron	ENST00000456936	ENST00000480109		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000503010	ENST00000329654		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000503010	ENST00000371049		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
intron-3CDS	ENST00000503010	ENST00000423207		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
intron-intron	ENST00000503010	ENST00000371048		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
intron-intron	ENST00000503010	ENST00000371045		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
intron-intron	ENST00000503010	ENST00000480109		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TMED7	chr5	114961298	-	PDE4B	chr1	66713143	+
Frame-shit	ENST00000543727	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000543727	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000550559	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000550559	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000548851	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000548851	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000454289	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000454289	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000540550	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
intron-3CDS	ENST00000540550	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000323833	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000323833	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000350762	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
Frame-shit	ENST00000350762	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
3UTR-3CDS	ENST00000497617	ENST00000367669		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
3UTR-3CDS	ENST00000497617	ENST00000308769		TCGA	LD	SARC	TCGA-DX-AB3A-01A	TSFM	chr12	58186856	+	RFWD2	chr1	175916375	-
In-frame	ENST00000415083	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000415083	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542420	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542743	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000539849	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000269137	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000545952	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000336777		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000337502		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-5UTR	ENST00000585241	ENST00000476392		TCGA	LD	SARC	TCGA-DX-AB3C-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
3UTR-3CDS	ENST00000426898	ENST00000355192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
3UTR-3CDS	ENST00000426898	ENST00000308259		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
3UTR-3CDS	ENST00000426898	ENST00000540804		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
3UTR-3CDS	ENST00000426898	ENST00000535664		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
3UTR-intron	ENST00000426898	ENST00000538725		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000425752	ENST00000355192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000425752	ENST00000308259		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000425752	ENST00000540804		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000425752	ENST00000535664		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
5CDS-intron	ENST00000425752	ENST00000538725		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000423947	ENST00000355192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000423947	ENST00000308259		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000423947	ENST00000540804		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000423947	ENST00000535664		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
5CDS-intron	ENST00000423947	ENST00000538725		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000435642	ENST00000355192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000435642	ENST00000308259		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000435642	ENST00000540804		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000435642	ENST00000535664		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
5CDS-intron	ENST00000435642	ENST00000538725		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000320560	ENST00000355192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000320560	ENST00000308259		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000320560	ENST00000540804		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000320560	ENST00000535664		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
5CDS-intron	ENST00000320560	ENST00000538725		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000441606	ENST00000355192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000441606	ENST00000308259		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000441606	ENST00000540804		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
Frame-shit	ENST00000441606	ENST00000535664		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
5CDS-intron	ENST00000441606	ENST00000538725		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ANO6	chr12	45761576	+	MSRB3	chr12	65847508	+
5UTR-3CDS	ENST00000368346	ENST00000519560		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000368346	ENST00000332966		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000368346	ENST00000404867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-5UTR	ENST00000368346	ENST00000521130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000392403	ENST00000519560		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000392403	ENST00000332966		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000392403	ENST00000404867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-5UTR	ENST00000392403	ENST00000521130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000548830	ENST00000519560		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000548830	ENST00000332966		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-3CDS	ENST00000548830	ENST00000404867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5UTR-5UTR	ENST00000548830	ENST00000521130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ASH1L	chr1	155531944	-	SLIT3	chr5	168678463	-
5CDS-intron	ENST00000311915	ENST00000546373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000311915	ENST00000551568		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000311915	ENST00000338356		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000311915	ENST00000549691		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000544871	ENST00000546373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000544871	ENST00000551568		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000544871	ENST00000338356		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000544871	ENST00000549691		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000398055	ENST00000546373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000398055	ENST00000551568		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-intron	ENST00000398055	ENST00000338356		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
5CDS-5UTR	ENST00000398055	ENST00000549691		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
intron-intron	ENST00000540673	ENST00000546373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
intron-intron	ENST00000540673	ENST00000551568		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
intron-intron	ENST00000540673	ENST00000338356		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
intron-5UTR	ENST00000540673	ENST00000549691		TCGA	LD	SARC	TCGA-FX-A2QS-01A	C12orf66	chr12	64609458	-	CPM	chr12	69351458	-
Frame-shit	ENST00000359314	ENST00000549405		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000393205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000332156		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000604798		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000552808		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000548651		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000552435		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
5CDS-intron	ENST00000359314	ENST00000602941		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-3CDS	ENST00000486693	ENST00000549405		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000393205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000332156		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000604798		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000552808		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000548651		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000552435		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-intron	ENST00000486693	ENST00000602941		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CD2AP	chr6	47522502	+	MGAT4C	chr12	87232657	-
intron-5UTR	ENST00000287916	ENST00000518836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000287916	ENST00000313708		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000287916	ENST00000380654		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000287916	ENST00000517373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000535571	ENST00000518836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000535571	ENST00000313708		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000535571	ENST00000380654		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000535571	ENST00000517373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000394605	ENST00000518836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000394605	ENST00000313708		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000394605	ENST00000380654		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000394605	ENST00000517373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000478752	ENST00000518836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000478752	ENST00000313708		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000478752	ENST00000380654		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
intron-5UTR	ENST00000478752	ENST00000517373		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLDN12	chr7	90123744	+	EBF1	chr5	158126150	-
5CDS-5UTR	ENST00000361168	ENST00000262027		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000361168	ENST00000315473		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000361168	ENST00000447721		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-5UTR	ENST00000368361	ENST00000262027		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000368361	ENST00000315473		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000368361	ENST00000447721		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-5UTR	ENST00000355560	ENST00000262027		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000355560	ENST00000315473		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000355560	ENST00000447721		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5UTR-5UTR	ENST00000497188	ENST00000262027		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5UTR-intron	ENST00000497188	ENST00000315473		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5UTR-intron	ENST00000497188	ENST00000447721		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-5UTR	ENST00000536801	ENST00000262027		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000536801	ENST00000315473		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
5CDS-intron	ENST00000536801	ENST00000447721		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CLK2	chr1	155238084	-	MARS	chr12	57881813	+
3UTR-3CDS	ENST00000435070	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-3CDS	ENST00000435070	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-intron	ENST00000435070	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-intron	ENST00000435070	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-3CDS	ENST00000456847	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-3CDS	ENST00000456847	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-intron	ENST00000456847	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-intron	ENST00000456847	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-3CDS	ENST00000266679	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-3CDS	ENST00000266679	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-intron	ENST00000266679	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
3UTR-intron	ENST00000266679	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
intron-3CDS	ENST00000550987	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
intron-3CDS	ENST00000550987	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
intron-intron	ENST00000550987	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
intron-intron	ENST00000550987	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000551516	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
Frame-shit	ENST00000551516	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
5CDS-intron	ENST00000551516	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
5CDS-intron	ENST00000551516	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	CPSF6	chr12	69656341	+	MYRFL	chr12	70297423	+
5CDS-5UTR	ENST00000265728	ENST00000236192		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DBF4	chr7	87517374	+	VAMP4	chr1	171707603	-
5CDS-5UTR	ENST00000265728	ENST00000415773		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DBF4	chr7	87517374	+	VAMP4	chr1	171707603	-
5CDS-5UTR	ENST00000265728	ENST00000367740		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DBF4	chr7	87517374	+	VAMP4	chr1	171707603	-
5CDS-5UTR	ENST00000265728	ENST00000482519		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DBF4	chr7	87517374	+	VAMP4	chr1	171707603	-
5CDS-3UTR	ENST00000585892	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-intron	ENST00000585892	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-3UTR	ENST00000314646	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-intron	ENST00000314646	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-3UTR	ENST00000359692	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-intron	ENST00000359692	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-3UTR	ENST00000389253	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-intron	ENST00000389253	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-3UTR	ENST00000355667	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-intron	ENST00000355667	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-3UTR	ENST00000408974	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5CDS-intron	ENST00000408974	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
intron-3UTR	ENST00000591819	ENST00000604609		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
intron-intron	ENST00000591819	ENST00000252809		TCGA	LD	SARC	TCGA-FX-A2QS-01A	DNM2	chr19	10829079	+	GDF15	chr19	18493160	+
5UTR-3CDS	ENST00000327979	ENST00000557021		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
5UTR-3CDS	ENST00000327979	ENST00000371650		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
5UTR-3CDS	ENST00000327979	ENST00000371652		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
5UTR-intron	ENST00000327979	ENST00000371656		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
Frame-shit	ENST00000535356	ENST00000557021		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
Frame-shit	ENST00000535356	ENST00000371650		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
Frame-shit	ENST00000535356	ENST00000371652		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
5CDS-intron	ENST00000535356	ENST00000371656		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-3CDS	ENST00000045083	ENST00000557021		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-3CDS	ENST00000045083	ENST00000371650		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-3CDS	ENST00000045083	ENST00000371652		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-intron	ENST00000045083	ENST00000371656		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-3CDS	ENST00000462842	ENST00000557021		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-3CDS	ENST00000462842	ENST00000371650		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-3CDS	ENST00000462842	ENST00000371652		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
intron-intron	ENST00000462842	ENST00000371656		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FAM65C	chr20	49307663	-	TMEM189	chr20	48760158	-
In-frame	ENST00000296933	ENST00000303127		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
In-frame	ENST00000296933	ENST00000515209		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
5CDS-5UTR	ENST00000296933	ENST00000506310		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
In-frame	ENST00000265094	ENST00000303127		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
In-frame	ENST00000265094	ENST00000515209		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
5CDS-5UTR	ENST00000265094	ENST00000506310		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
In-frame	ENST00000393802	ENST00000303127		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
In-frame	ENST00000393802	ENST00000515209		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
5CDS-5UTR	ENST00000393802	ENST00000506310		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
intron-3CDS	ENST00000425623	ENST00000303127		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
intron-3CDS	ENST00000425623	ENST00000515209		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
intron-5UTR	ENST00000425623	ENST00000506310		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
intron-3CDS	ENST00000522891	ENST00000303127		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
intron-3CDS	ENST00000522891	ENST00000515209		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
intron-5UTR	ENST00000522891	ENST00000506310		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FBXW11	chr5	171433462	-	LMAN2	chr5	176765606	-
5CDS-intron	ENST00000396364	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000396364	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000396364	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000377270	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000377270	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000377270	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000396366	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000396366	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000396366	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000498653	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000498653	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000498653	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	FXN	chr9	71679951	+	FPR2	chr19	52263285	+
5CDS-intron	ENST00000396081	ENST00000550629		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000396081	ENST00000465950		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000396081	ENST00000369367		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000396081	ENST00000549162		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000396081	ENST00000419565		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000396081	ENST00000395454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000396081	ENST00000395453		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000311350	ENST00000550629		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000311350	ENST00000465950		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000311350	ENST00000369367		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-intron	ENST00000311350	ENST00000549162		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000311350	ENST00000419565		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000311350	ENST00000395454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
5CDS-5UTR	ENST00000311350	ENST00000395453		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-intron	ENST00000426180	ENST00000550629		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-intron	ENST00000426180	ENST00000465950		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000426180	ENST00000369367		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-intron	ENST00000426180	ENST00000549162		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000426180	ENST00000419565		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000426180	ENST00000395454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
intron-5UTR	ENST00000426180	ENST00000395453		TCGA	LD	SARC	TCGA-FX-A2QS-01A	HERPUD2	chr7	35733794	-	SCAF11	chr12	46357971	-
Frame-shit	ENST00000392452	ENST00000302823		TCGA	LD	SARC	TCGA-FX-A2QS-01A	MB21D2	chr3	192635419	-	CTLA4	chr2	204735309	+
Frame-shit	ENST00000392452	ENST00000295854		TCGA	LD	SARC	TCGA-FX-A2QS-01A	MB21D2	chr3	192635419	-	CTLA4	chr2	204735309	+
Frame-shit	ENST00000392452	ENST00000472206		TCGA	LD	SARC	TCGA-FX-A2QS-01A	MB21D2	chr3	192635419	-	CTLA4	chr2	204735309	+
5CDS-intron	ENST00000392452	ENST00000487393		TCGA	LD	SARC	TCGA-FX-A2QS-01A	MB21D2	chr3	192635419	-	CTLA4	chr2	204735309	+
5CDS-5UTR	ENST00000392452	ENST00000427473		TCGA	LD	SARC	TCGA-FX-A2QS-01A	MB21D2	chr3	192635419	-	CTLA4	chr2	204735309	+
5CDS-intron	ENST00000248306	ENST00000469675		TCGA	LD	SARC	TCGA-FX-A2QS-01A	METTL25	chr12	82752603	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000248306	ENST00000257659		TCGA	LD	SARC	TCGA-FX-A2QS-01A	METTL25	chr12	82752603	+	GTPBP10	chr7	90001469	+
5CDS-intron	ENST00000248306	ENST00000222511		TCGA	LD	SARC	TCGA-FX-A2QS-01A	METTL25	chr12	82752603	+	GTPBP10	chr7	90001469	+
3UTR-intron	ENST00000547357	ENST00000469675		TCGA	LD	SARC	TCGA-FX-A2QS-01A	METTL25	chr12	82752603	+	GTPBP10	chr7	90001469	+
3UTR-intron	ENST00000547357	ENST00000257659		TCGA	LD	SARC	TCGA-FX-A2QS-01A	METTL25	chr12	82752603	+	GTPBP10	chr7	90001469	+
3UTR-intron	ENST00000547357	ENST00000222511		TCGA	LD	SARC	TCGA-FX-A2QS-01A	METTL25	chr12	82752603	+	GTPBP10	chr7	90001469	+
Frame-shit	ENST00000536525	ENST00000496902		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000536525	ENST00000222761		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000536525	ENST00000535619		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-intron	ENST00000536525	ENST00000518886		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000397909	ENST00000496902		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000397909	ENST00000222761		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000397909	ENST00000535619		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-intron	ENST00000397909	ENST00000518886		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000228327	ENST00000496902		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000228327	ENST00000222761		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000228327	ENST00000535619		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-intron	ENST00000228327	ENST00000518886		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000266692	ENST00000496902		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
Frame-shit	ENST00000266692	ENST00000222761		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-5UTR	ENST00000266692	ENST00000535619		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
5CDS-intron	ENST00000266692	ENST00000518886		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-3CDS	ENST00000552300	ENST00000496902		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-3CDS	ENST00000552300	ENST00000222761		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-5UTR	ENST00000552300	ENST00000535619		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-intron	ENST00000552300	ENST00000518886		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-3CDS	ENST00000541270	ENST00000496902		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-3CDS	ENST00000541270	ENST00000222761		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-5UTR	ENST00000541270	ENST00000535619		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
intron-intron	ENST00000541270	ENST00000518886		TCGA	LD	SARC	TCGA-FX-A2QS-01A	NAV3	chr12	78225484	+	EVX1	chr7	27284667	+
In-frame	ENST00000547103	ENST00000403681		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000547103	ENST00000541363		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000547103	ENST00000393577		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000547103	ENST00000393578		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000547103	ENST00000425208		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000547103	ENST00000536545		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000547103	ENST00000354636		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000403681		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000541363		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000393577		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000393578		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000425208		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000536545		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000458043	ENST00000354636		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000403681		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000541363		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000393577		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000393578		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000425208		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000536545		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000546620	ENST00000354636		TCGA	LD	SARC	TCGA-FX-A2QS-01A	OTOGL	chr12	80699475	+	HMGA2	chr12	66221781	+
In-frame	ENST00000549396	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000549396	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
5CDS-intron	ENST00000549396	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000550584	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000550584	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
5CDS-intron	ENST00000550584	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000549325	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000549325	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
5CDS-intron	ENST00000549325	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000545296	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000545296	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-intron	ENST00000545296	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000550359	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000550359	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-intron	ENST00000550359	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000407050	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000407050	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-intron	ENST00000407050	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000333447	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000333447	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
5CDS-intron	ENST00000333447	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000548586	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000548586	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
5CDS-intron	ENST00000548586	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000443686	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000443686	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-intron	ENST00000443686	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000552948	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
In-frame	ENST00000552948	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
5CDS-intron	ENST00000552948	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000541570	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000541570	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-intron	ENST00000541570	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000541017	ENST00000547103		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-3CDS	ENST00000541017	ENST00000458043		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
intron-intron	ENST00000541017	ENST00000546620		TCGA	LD	SARC	TCGA-FX-A2QS-01A	PPFIA2	chr12	82147752	-	OTOGL	chr12	80690607	+
Frame-shit	ENST00000247833	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000247833	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-intron	ENST00000247833	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000247833	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000247833	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000247833	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
Frame-shit	ENST00000378815	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000378815	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-intron	ENST00000378815	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000378815	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000378815	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000378815	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5UTR-3CDS	ENST00000325555	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5UTR-5UTR	ENST00000325555	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5UTR-intron	ENST00000325555	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5UTR-5UTR	ENST00000325555	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5UTR-5UTR	ENST00000325555	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5UTR-5UTR	ENST00000325555	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
Frame-shit	ENST00000483530	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000483530	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-intron	ENST00000483530	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000483530	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000483530	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000483530	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
Frame-shit	ENST00000550536	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000550536	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-intron	ENST00000550536	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000550536	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000550536	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000550536	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
Frame-shit	ENST00000362025	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000362025	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-intron	ENST00000362025	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000362025	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000362025	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
5CDS-5UTR	ENST00000362025	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-3CDS	ENST00000551641	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000551641	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-intron	ENST00000551641	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000551641	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000551641	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000551641	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-3CDS	ENST00000553099	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000553099	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-intron	ENST00000553099	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000553099	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000553099	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000553099	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-3CDS	ENST00000550847	ENST00000519389		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000550847	ENST00000374727		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-intron	ENST00000550847	ENST00000336279		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000550847	ENST00000441993		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000550847	ENST00000419594		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-5UTR	ENST00000550847	ENST00000343002		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAB3IP	chr12	70150443	+	HEPH	chrX	65390400	+
intron-3CDS	ENST00000356415	ENST00000292599		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
intron-3UTR	ENST00000356415	ENST00000503050		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
5UTR-3CDS	ENST00000436150	ENST00000292599		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
5UTR-3UTR	ENST00000436150	ENST00000503050		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
intron-3CDS	ENST00000369709	ENST00000292599		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
intron-3UTR	ENST00000369709	ENST00000503050		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
intron-3CDS	ENST00000545460	ENST00000292599		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
intron-3UTR	ENST00000545460	ENST00000503050		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
3UTR-3CDS	ENST00000494982	ENST00000292599		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
3UTR-3UTR	ENST00000494982	ENST00000503050		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RAP1A	chr1	112170185	+	MAML1	chr5	179198148	+
Frame-shit	ENST00000330430	ENST00000256935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000330430	ENST00000540750		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000330430	ENST00000520908		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000330430	ENST00000523351		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
Frame-shit	ENST00000371374	ENST00000256935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000371374	ENST00000540750		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000371374	ENST00000520908		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000371374	ENST00000523351		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
In-frame	ENST00000306764	ENST00000256935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000306764	ENST00000540750		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000306764	ENST00000520908		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000306764	ENST00000523351		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
Frame-shit	ENST00000405162	ENST00000256935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000405162	ENST00000540750		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000405162	ENST00000520908		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-3UTR	ENST00000405162	ENST00000523351		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RCAN2	chr6	46214485	-	DOCK2	chr5	169267761	+
5CDS-5UTR	ENST00000425013	ENST00000404938		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000425013	ENST00000258738		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000425013	ENST00000477094		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000425013	ENST00000443026		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000425013	ENST00000406935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-5UTR	ENST00000389902	ENST00000404938		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000389902	ENST00000258738		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000389902	ENST00000477094		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000389902	ENST00000443026		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
5CDS-intron	ENST00000389902	ENST00000406935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
intron-5UTR	ENST00000469375	ENST00000404938		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
intron-intron	ENST00000469375	ENST00000258738		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
intron-intron	ENST00000469375	ENST00000477094		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
intron-intron	ENST00000469375	ENST00000443026		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
intron-intron	ENST00000469375	ENST00000406935		TCGA	LD	SARC	TCGA-FX-A2QS-01A	RNF216	chr7	5751392	-	ABCB5	chr7	20662888	+
intron-3CDS	ENST00000565644	ENST00000530878		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
intron-3CDS	ENST00000565644	ENST00000361897		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
intron-intron	ENST00000565644	ENST00000493151		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
intron-intron	ENST00000565644	ENST00000454693		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
In-frame	ENST00000261622	ENST00000530878		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
In-frame	ENST00000261622	ENST00000361897		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000261622	ENST00000493151		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000261622	ENST00000454693		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLC7A5	chr16	87902491	-	NOS1AP	chr1	162124195	+
5CDS-intron	ENST00000519560	ENST00000258111		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168671709	-	KCNMB4	chr12	70792509	+
5CDS-intron	ENST00000332966	ENST00000258111		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168671709	-	KCNMB4	chr12	70792509	+
5CDS-intron	ENST00000404867	ENST00000258111		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168671709	-	KCNMB4	chr12	70792509	+
5UTR-intron	ENST00000521130	ENST00000258111		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168671709	-	KCNMB4	chr12	70792509	+
Frame-shit	ENST00000519560	ENST00000542120		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000519560	ENST00000229088		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000519560	ENST00000456757		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000519560	ENST00000539867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000332966	ENST00000542120		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000332966	ENST00000229088		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000332966	ENST00000456757		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000332966	ENST00000539867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000404867	ENST00000542120		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000404867	ENST00000229088		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000404867	ENST00000456757		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5CDS-intron	ENST00000404867	ENST00000539867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5UTR-3CDS	ENST00000521130	ENST00000542120		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5UTR-3CDS	ENST00000521130	ENST00000229088		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5UTR-intron	ENST00000521130	ENST00000456757		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
5UTR-intron	ENST00000521130	ENST00000539867		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SLIT3	chr5	168620483	-	TBC1D30	chr12	65258448	+
Frame-shit	ENST00000286398	ENST00000371130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000286398	ENST00000422452		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
5CDS-intron	ENST00000286398	ENST00000461429		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000374793	ENST00000371130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000374793	ENST00000422452		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
5CDS-intron	ENST00000374793	ENST00000461429		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000303219	ENST00000371130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000303219	ENST00000422452		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
5CDS-intron	ENST00000303219	ENST00000461429		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000374787	ENST00000371130		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
Frame-shit	ENST00000374787	ENST00000422452		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
5CDS-intron	ENST00000374787	ENST00000461429		TCGA	LD	SARC	TCGA-FX-A2QS-01A	SMC2	chr9	106882443	+	TENM1	chrX	124097666	-
5CDS-5UTR	ENST00000543117	ENST00000393240		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000543117	ENST00000261205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000543117	ENST00000457153		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000543117	ENST00000552744		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000543117	ENST00000549454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000265393	ENST00000393240		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000265393	ENST00000261205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000265393	ENST00000457153		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000265393	ENST00000552744		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000265393	ENST00000549454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000409980	ENST00000393240		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000409980	ENST00000261205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000409980	ENST00000457153		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000409980	ENST00000552744		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000409980	ENST00000549454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000433216	ENST00000393240		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000433216	ENST00000261205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000433216	ENST00000457153		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000433216	ENST00000552744		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000433216	ENST00000549454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000396319	ENST00000393240		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000396319	ENST00000261205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000396319	ENST00000457153		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-5UTR	ENST00000396319	ENST00000552744		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-3UTR	ENST00000396319	ENST00000549454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000494033	ENST00000393240		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000494033	ENST00000261205		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000494033	ENST00000457153		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
intron-5UTR	ENST00000494033	ENST00000552744		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
intron-3UTR	ENST00000494033	ENST00000549454		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TAX1BP1	chr7	27827222	+	SYT1	chr12	79611283	+
5CDS-intron	ENST00000309720	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000309720	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000309720	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000371369	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000371369	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000371369	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
intron-intron	ENST00000371352	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
intron-intron	ENST00000371352	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
intron-intron	ENST00000371352	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000440464	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000440464	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
5CDS-intron	ENST00000440464	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
intron-intron	ENST00000480821	ENST00000340023		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
intron-intron	ENST00000480821	ENST00000598953		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
intron-intron	ENST00000480821	ENST00000598776		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMEM255A	chrX	119438204	-	FPR2	chr19	52263285	+
Frame-shit	ENST00000321196	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
Frame-shit	ENST00000321196	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
5CDS-intron	ENST00000321196	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
5CDS-intron	ENST00000321196	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
Frame-shit	ENST00000548305	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
Frame-shit	ENST00000548305	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
5CDS-intron	ENST00000548305	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
5CDS-intron	ENST00000548305	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
intron-3CDS	ENST00000549919	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
intron-3CDS	ENST00000549919	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
intron-intron	ENST00000549919	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
intron-intron	ENST00000549919	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	TMTC2	chr12	83081447	+	MYRFL	chr12	70287543	+
Frame-shit	ENST00000236192	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
Frame-shit	ENST00000236192	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5CDS-intron	ENST00000236192	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5CDS-intron	ENST00000236192	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
In-frame	ENST00000415773	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
In-frame	ENST00000415773	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5CDS-intron	ENST00000415773	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5CDS-intron	ENST00000415773	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
Frame-shit	ENST00000367740	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
Frame-shit	ENST00000367740	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5CDS-intron	ENST00000367740	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5CDS-intron	ENST00000367740	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000482519	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000482519	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000482519	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5UTR-intron	ENST00000482519	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A2QS-01A	VAMP4	chr1	171707489	-	MYRFL	chr12	70320351	+
5UTR-3CDS	ENST00000293471	ENST00000375990		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
5UTR-3CDS	ENST00000293471	ENST00000259253		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
5UTR-intron	ENST00000293471	ENST00000465836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
5UTR-3CDS	ENST00000391794	ENST00000375990		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
5UTR-3CDS	ENST00000391794	ENST00000259253		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
5UTR-intron	ENST00000391794	ENST00000465836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
intron-3CDS	ENST00000601794	ENST00000375990		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
intron-3CDS	ENST00000601794	ENST00000259253		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
intron-intron	ENST00000601794	ENST00000465836		TCGA	LD	SARC	TCGA-FX-A2QS-01A	ZNF613	chr19	52433149	+	UGGT1	chr2	128903377	+
5UTR-3CDS	ENST00000299293	ENST00000321196		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000299293	ENST00000548305		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000299293	ENST00000549919		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-3CDS	ENST00000549921	ENST00000321196		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000549921	ENST00000548305		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000549921	ENST00000549919		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
intron-3CDS	ENST00000550389	ENST00000321196		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
intron-intron	ENST00000550389	ENST00000548305		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
intron-intron	ENST00000550389	ENST00000549919		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-3CDS	ENST00000397997	ENST00000321196		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000397997	ENST00000548305		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
5UTR-intron	ENST00000397997	ENST00000549919		TCGA	LD	SARC	TCGA-FX-A3NJ-01A	FRS2	chr12	69925836	+	TMTC2	chr12	83379704	+
Frame-shit	ENST00000546373	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000546373	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000546373	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000546373	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-5UTR	ENST00000398073	ENST00000296978		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000398073	ENST00000545622		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000398073	ENST00000392429		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000548823	ENST00000296978		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000548823	ENST00000545622		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000548823	ENST00000392429		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000547701	ENST00000296978		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000547701	ENST00000545622		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
intron-5UTR	ENST00000547701	ENST00000392429		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58217812	-	TMEM200A	chr6	130761552	+
5CDS-intron	ENST00000398073	ENST00000359019		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5CDS-intron	ENST00000398073	ENST00000334822		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5CDS-intron	ENST00000398073	ENST00000426126		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5CDS-3UTR	ENST00000398073	ENST00000550789		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
intron-intron	ENST00000548823	ENST00000359019		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
intron-intron	ENST00000548823	ENST00000334822		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
intron-intron	ENST00000548823	ENST00000426126		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
intron-3UTR	ENST00000548823	ENST00000550789		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5UTR-intron	ENST00000547701	ENST00000359019		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5UTR-intron	ENST00000547701	ENST00000334822		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5UTR-intron	ENST00000547701	ENST00000426126		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5UTR-3UTR	ENST00000547701	ENST00000550789		TCGA	LD	SARC	TCGA-FX-A3NK-01A	CTDSP2	chr12	58223231	-	ZDHHC17	chr12	77242013	+
5CDS-5UTR	ENST00000373913	ENST00000398174		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373913	ENST00000340852		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373913	ENST00000335574		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373913	ENST00000376127		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000373913	ENST00000492709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000401952	ENST00000398174		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000401952	ENST00000340852		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000401952	ENST00000335574		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000401952	ENST00000376127		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000401952	ENST00000492709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373907	ENST00000398174		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373907	ENST00000340852		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373907	ENST00000335574		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000373907	ENST00000376127		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000373907	ENST00000492709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000339266	ENST00000398174		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000339266	ENST00000340852		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000339266	ENST00000335574		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000339266	ENST00000376127		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000339266	ENST00000492709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
3UTR-5UTR	ENST00000475894	ENST00000398174		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
3UTR-5UTR	ENST00000475894	ENST00000340852		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
3UTR-5UTR	ENST00000475894	ENST00000335574		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
3UTR-5UTR	ENST00000475894	ENST00000376127		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
3UTR-intron	ENST00000475894	ENST00000492709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000340491	ENST00000398174		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000340491	ENST00000340852		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000340491	ENST00000335574		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-5UTR	ENST00000340491	ENST00000376127		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5CDS-intron	ENST00000340491	ENST00000492709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	DLGAP4	chr20	35129014	+	HM13	chr20	30102284	+
5UTR-intron	ENST00000299293	ENST00000283228		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000299293	ENST00000440835		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000299293	ENST00000537619		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000299293	ENST00000378778		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000299293	ENST00000342084		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000299293	ENST00000549308		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000283228		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000440835		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000537619		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000378778		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000342084		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000549921	ENST00000549308		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000283228		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000440835		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000537619		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000378778		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000342084		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
5UTR-intron	ENST00000550389	ENST00000549308		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000283228		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000440835		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000537619		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000378778		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000342084		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
intron-intron	ENST00000397997	ENST00000549308		TCGA	LD	SARC	TCGA-FX-A3NK-01A	FRS2	chr12	69864310	+	PTPRR	chr12	81072381	+
In-frame	ENST00000462284	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
In-frame	ENST00000462284	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000462284	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000462284	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000356290	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000356290	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000356290	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000356290	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000540827	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000540827	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000540827	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000540827	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000258149	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000258149	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000258149	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000258149	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000428863	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000428863	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000428863	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000428863	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393412	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393412	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000393412	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000393412	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000258148	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000258148	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000258148	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000258148	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000544561	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000544561	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000544561	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000544561	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393410	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393410	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000393410	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000393410	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393413	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393413	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000393413	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000393413	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000517852	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000517852	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000517852	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000517852	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000545204	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000545204	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000545204	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000545204	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
In-frame	ENST00000350057	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
In-frame	ENST00000350057	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000350057	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000350057	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000360430	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000360430	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000360430	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000360430	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000299252	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000299252	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000299252	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000299252	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000348801	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000348801	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000348801	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000348801	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000478070	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000478070	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000478070	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000478070	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000544125	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000544125	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000544125	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-intron	ENST00000544125	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3NK-01A	MDM2	chr12	69218431	+	MYRFL	chr12	70249060	+
intron-5UTR	ENST00000536525	ENST00000311083		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000536525	ENST00000552330		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000536525	ENST00000546966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000536525	ENST00000547435		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000397909	ENST00000311083		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000397909	ENST00000552330		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000397909	ENST00000546966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000397909	ENST00000547435		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000228327	ENST00000311083		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000228327	ENST00000552330		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000228327	ENST00000546966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000228327	ENST00000547435		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000266692	ENST00000311083		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000266692	ENST00000552330		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000266692	ENST00000546966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000266692	ENST00000547435		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552300	ENST00000311083		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552300	ENST00000552330		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552300	ENST00000546966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000552300	ENST00000547435		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000541270	ENST00000311083		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000541270	ENST00000552330		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000541270	ENST00000546966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
intron-5UTR	ENST00000541270	ENST00000547435		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NAV3	chr12	77718994	+	CSRP2	chr12	77260041	-
Frame-shit	ENST00000356918	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000356918	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000356918	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000510769	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000510769	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000510769	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000429253	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000429253	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000429253	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000510688	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000510688	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000510688	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000511262	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000511262	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000511262	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000383366	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000383366	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000383366	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
intron-3CDS	ENST00000412440	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
intron-3CDS	ENST00000412440	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
intron-3CDS	ENST00000412440	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000507910	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000507910	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000507910	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000508196	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000508196	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
Frame-shit	ENST00000508196	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
intron-3CDS	ENST00000426022	ENST00000600128		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
intron-3CDS	ENST00000426022	ENST00000270509		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
intron-3CDS	ENST00000426022	ENST00000601739		TCGA	LD	SARC	TCGA-FX-A3NK-01A	NEK11	chr3	130799432	+	FBN3	chr19	8197990	-
5CDS-5UTR	ENST00000353809	ENST00000608990		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OCA2	chr15	28116300	-	C20orf203	chr20	31239783	-
5CDS-5UTR	ENST00000354638	ENST00000608990		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OCA2	chr15	28116300	-	C20orf203	chr20	31239783	-
intron-5UTR	ENST00000382996	ENST00000608990		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OCA2	chr15	28116300	-	C20orf203	chr20	31239783	-
5CDS-5UTR	ENST00000552285	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
5CDS-5UTR	ENST00000315970	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
5CDS-5UTR	ENST00000439210	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
5CDS-5UTR	ENST00000389146	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
intron-5UTR	ENST00000413095	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
intron-5UTR	ENST00000551035	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
intron-5UTR	ENST00000435406	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
5CDS-5UTR	ENST00000257966	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
5CDS-5UTR	ENST00000389142	ENST00000301480		TCGA	LD	SARC	TCGA-FX-A3NK-01A	OS9	chr12	58090156	+	ZNF560	chr19	9608891	-
intron-3CDS	ENST00000592685	ENST00000381393		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PDE4A	chr19	10541762	+	MBD3L2	chr19	7051052	+
intron-3CDS	ENST00000380702	ENST00000381393		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PDE4A	chr19	10541762	+	MBD3L2	chr19	7051052	+
intron-3CDS	ENST00000352831	ENST00000381393		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PDE4A	chr19	10541762	+	MBD3L2	chr19	7051052	+
Frame-shit	ENST00000293683	ENST00000381393		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PDE4A	chr19	10541762	+	MBD3L2	chr19	7051052	+
intron-3CDS	ENST00000440014	ENST00000381393		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PDE4A	chr19	10541762	+	MBD3L2	chr19	7051052	+
intron-3CDS	ENST00000344979	ENST00000381393		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PDE4A	chr19	10541762	+	MBD3L2	chr19	7051052	+
intron-3CDS	ENST00000283228	ENST00000264828		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRR	chr12	81013227	+	COL5A3	chr19	10114739	-
intron-3CDS	ENST00000440835	ENST00000264828		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRR	chr12	81013227	+	COL5A3	chr19	10114739	-
intron-3CDS	ENST00000537619	ENST00000264828		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRR	chr12	81013227	+	COL5A3	chr19	10114739	-
intron-3CDS	ENST00000378778	ENST00000264828		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRR	chr12	81013227	+	COL5A3	chr19	10114739	-
intron-3CDS	ENST00000342084	ENST00000264828		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRR	chr12	81013227	+	COL5A3	chr19	10114739	-
intron-3CDS	ENST00000549308	ENST00000264828		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRR	chr12	81013227	+	COL5A3	chr19	10114739	-
5UTR-5UTR	ENST00000588552	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5UTR-5UTR	ENST00000588552	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5UTR-5UTR	ENST00000588552	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000262963	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000262963	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000262963	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000372412	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000372412	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000372412	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000348075	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000348075	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000348075	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000357368	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000357368	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000357368	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000353284	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000353284	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000353284	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000587303	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000587303	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000587303	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000588012	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000588012	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000588012	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000592099	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000592099	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000592099	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000590509	ENST00000301455		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000590509	ENST00000541807		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000590509	ENST00000393962		TCGA	LD	SARC	TCGA-FX-A3NK-01A	PTPRS	chr19	5286061	-	ANGPTL4	chr19	8429090	+
Frame-shit	ENST00000407327	ENST00000368911		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
Frame-shit	ENST00000407327	ENST00000323817		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
5CDS-intron	ENST00000407327	ENST00000413605		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
5CDS-intron	ENST00000407327	ENST00000497709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-3CDS	ENST00000335757	ENST00000368911		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-3CDS	ENST00000335757	ENST00000323817		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-intron	ENST00000335757	ENST00000413605		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-intron	ENST00000335757	ENST00000497709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-3CDS	ENST00000586078	ENST00000368911		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-3CDS	ENST00000586078	ENST00000323817		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-intron	ENST00000586078	ENST00000413605		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-intron	ENST00000586078	ENST00000497709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-3CDS	ENST00000588214	ENST00000368911		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-3CDS	ENST00000588214	ENST00000323817		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-intron	ENST00000588214	ENST00000413605		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
intron-intron	ENST00000588214	ENST00000497709		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SLC44A2	chr19	10713237	+	CDK19	chr6	110991744	-
5UTR-5UTR	ENST00000358026	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
5UTR-5UTR	ENST00000344626	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
5UTR-5UTR	ENST00000429416	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
5UTR-5UTR	ENST00000541122	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
5UTR-5UTR	ENST00000589677	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
5UTR-5UTR	ENST00000444061	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
intron-5UTR	ENST00000590574	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
intron-5UTR	ENST00000413806	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
intron-5UTR	ENST00000450717	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
intron-5UTR	ENST00000538456	ENST00000228644		TCGA	LD	SARC	TCGA-FX-A3NK-01A	SMARCA4	chr19	11071850	+	MYF5	chr12	81110819	+
In-frame	ENST00000367463	ENST00000332517		TCGA	LD	SARC	TCGA-FX-A3NK-01A	UST	chr6	149208165	+	TRIML1	chr4	189063406	+
5CDS-intron	ENST00000367463	ENST00000507581		TCGA	LD	SARC	TCGA-FX-A3NK-01A	UST	chr6	149208165	+	TRIML1	chr4	189063406	+
intron-3CDS	ENST00000466695	ENST00000332517		TCGA	LD	SARC	TCGA-FX-A3NK-01A	UST	chr6	149208165	+	TRIML1	chr4	189063406	+
intron-intron	ENST00000466695	ENST00000507581		TCGA	LD	SARC	TCGA-FX-A3NK-01A	UST	chr6	149208165	+	TRIML1	chr4	189063406	+
Frame-shit	ENST00000367630	ENST00000253329		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000367630	ENST00000340881		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000367621	ENST00000253329		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000367621	ENST00000340881		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000452973	ENST00000253329		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
Frame-shit	ENST00000452973	ENST00000340881		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
3UTR-3CDS	ENST00000491881	ENST00000253329		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
3UTR-3CDS	ENST00000491881	ENST00000340881		TCGA	LD	SARC	TCGA-FX-A3NK-01A	VTA1	chr6	142491558	+	PPIL4	chr6	149826840	-
5UTR-3CDS	ENST00000301480	ENST00000552285		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000301480	ENST00000315970		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000301480	ENST00000439210		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-3CDS	ENST00000301480	ENST00000389146		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-intron	ENST00000301480	ENST00000413095		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-intron	ENST00000301480	ENST00000551035		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-intron	ENST00000301480	ENST00000435406		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-intron	ENST00000301480	ENST00000257966		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
5UTR-intron	ENST00000301480	ENST00000389142		TCGA	LD	SARC	TCGA-FX-A3NK-01A	ZNF560	chr19	9608804	-	OS9	chr12	58109543	+
Frame-shit	ENST00000360839	ENST00000400897		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
5CDS-intron	ENST00000360839	ENST00000400898		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
Frame-shit	ENST00000297183	ENST00000400897		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
5CDS-intron	ENST00000297183	ENST00000400898		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
Frame-shit	ENST00000394723	ENST00000400897		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
5CDS-intron	ENST00000394723	ENST00000400898		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
Frame-shit	ENST00000394722	ENST00000400897		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
5CDS-intron	ENST00000394722	ENST00000400898		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
intron-3CDS	ENST00000462121	ENST00000400897		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
intron-intron	ENST00000462121	ENST00000400898		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
intron-3CDS	ENST00000544120	ENST00000400897		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
intron-intron	ENST00000544120	ENST00000400898		TCGA	LD	SARC	TCGA-FX-A3RE-01A	ANKHD1	chr5	139781858	+	MASP2	chr1	11090307	-
Frame-shit	ENST00000546373	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000546373	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000546373	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000546373	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000551568	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000338356	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000552032		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000547771		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000299350		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
intron-3CDS	ENST00000549691	ENST00000535034		TCGA	LD	SARC	TCGA-FX-A3RE-01A	CPM	chr12	69326458	-	MYRFL	chr12	70345893	+
Frame-shit	ENST00000428084	ENST00000354725		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
5CDS-intron	ENST00000428084	ENST00000467238		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
Frame-shit	ENST00000494651	ENST00000354725		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
5CDS-intron	ENST00000494651	ENST00000467238		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
Frame-shit	ENST00000437633	ENST00000354725		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
5CDS-intron	ENST00000437633	ENST00000467238		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
intron-3CDS	ENST00000476846	ENST00000354725		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
intron-intron	ENST00000476846	ENST00000467238		TCGA	LD	SARC	TCGA-FX-A3RE-01A	DOCK4	chr7	111376973	-	SND1	chr7	127714554	+
5CDS-5UTR	ENST00000380737	ENST00000438528		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000380737	ENST00000417410		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000380737	ENST00000414154		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-3UTR	ENST00000380737	ENST00000529505		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000380737	ENST00000416469		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000380737	ENST00000490331		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000315985	ENST00000438528		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000315985	ENST00000417410		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000315985	ENST00000414154		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-3UTR	ENST00000315985	ENST00000529505		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000315985	ENST00000416469		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5CDS-5UTR	ENST00000315985	ENST00000490331		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
3UTR-5UTR	ENST00000523473	ENST00000438528		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
3UTR-5UTR	ENST00000523473	ENST00000417410		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
3UTR-5UTR	ENST00000523473	ENST00000414154		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
3UTR-3UTR	ENST00000523473	ENST00000529505		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
3UTR-5UTR	ENST00000523473	ENST00000416469		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
3UTR-5UTR	ENST00000523473	ENST00000490331		TCGA	LD	SARC	TCGA-FX-A3RE-01A	PPP2R2A	chr8	26151256	+	SMIM19	chr8	42401612	+
5UTR-3CDS	ENST00000374736	ENST00000374762		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
5UTR-3UTR	ENST00000374736	ENST00000461177		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
intron-3CDS	ENST00000494467	ENST00000374762		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
intron-3UTR	ENST00000494467	ENST00000461177		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
5UTR-3CDS	ENST00000423487	ENST00000374762		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
5UTR-3UTR	ENST00000423487	ENST00000461177		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
5UTR-3CDS	ENST00000374733	ENST00000374762		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
5UTR-3UTR	ENST00000374733	ENST00000461177		TCGA	LD	SARC	TCGA-FX-A3TO-01A	ABCA1	chr9	107690216	-	NIPSNAP3B	chr9	107533130	+
Frame-shit	ENST00000558401	ENST00000558480		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
Frame-shit	ENST00000558401	ENST00000419573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
5CDS-intron	ENST00000558401	ENST00000560334		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
5CDS-intron	ENST00000558401	ENST00000394745		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
Frame-shit	ENST00000559916	ENST00000558480		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
Frame-shit	ENST00000559916	ENST00000419573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
5CDS-intron	ENST00000559916	ENST00000560334		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
5CDS-intron	ENST00000559916	ENST00000394745		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
Frame-shit	ENST00000544417	ENST00000558480		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
Frame-shit	ENST00000544417	ENST00000419573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
5CDS-intron	ENST00000544417	ENST00000560334		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
5CDS-intron	ENST00000544417	ENST00000394745		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
intron-3CDS	ENST00000559220	ENST00000558480		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
intron-3CDS	ENST00000559220	ENST00000419573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
intron-intron	ENST00000559220	ENST00000560334		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
intron-intron	ENST00000559220	ENST00000394745		TCGA	LD	SARC	TCGA-FX-A3TO-01A	B2M	chr15	45003811	+	RASGRF1	chr15	79265762	-
intron-3CDS	ENST00000563294	ENST00000264335		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000563294	ENST00000571732		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000563294	ENST00000573026		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000563294	ENST00000575977		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000563294	ENST00000498643		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000442196	ENST00000264335		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000442196	ENST00000571732		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000442196	ENST00000573026		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000442196	ENST00000575977		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000442196	ENST00000498643		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000310958	ENST00000264335		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000310958	ENST00000571732		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000310958	ENST00000573026		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000310958	ENST00000575977		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000310958	ENST00000498643		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000425574	ENST00000264335		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000425574	ENST00000571732		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000425574	ENST00000573026		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000425574	ENST00000575977		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000425574	ENST00000498643		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000569205	ENST00000264335		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000569205	ENST00000571732		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000569205	ENST00000573026		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000569205	ENST00000575977		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000569205	ENST00000498643		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CCPG1	chr15	55648510	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000394196	ENST00000563294		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000442196		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000310958		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000425574		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000394196	ENST00000569205		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000563294		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000442196		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000310958		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000425574		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000557381	ENST00000569205		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000563294		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000442196		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000310958		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000425574		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
5CDS-intron	ENST00000420239	ENST00000569205		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000563294		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000442196		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000310958		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000425574		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
intron-intron	ENST00000536619	ENST00000569205		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000563294		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000442196		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000310958		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000425574		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
3UTR-intron	ENST00000554122	ENST00000569205		TCGA	LD	SARC	TCGA-FX-A3TO-01A	CHD2	chr15	93444529	+	CCPG1	chr15	55677912	-
In-frame	ENST00000341861	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
In-frame	ENST00000341861	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
In-frame	ENST00000341861	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-intron	ENST00000341861	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000358939	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000358939	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000358939	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-intron	ENST00000358939	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000300141	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000300141	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000300141	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-intron	ENST00000300141	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000321147	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000321147	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000321147	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-intron	ENST00000321147	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000321118	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000321118	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
Frame-shit	ENST00000321118	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-intron	ENST00000321118	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-3CDS	ENST00000339244	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-3CDS	ENST00000339244	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-3CDS	ENST00000339244	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-intron	ENST00000339244	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
In-frame	ENST00000559233	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
In-frame	ENST00000559233	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
In-frame	ENST00000559233	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-intron	ENST00000559233	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-3CDS	ENST00000560048	ENST00000397795		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-3CDS	ENST00000560048	ENST00000256552		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-3CDS	ENST00000560048	ENST00000542188		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
intron-intron	ENST00000560048	ENST00000559179		TCGA	LD	SARC	TCGA-FX-A3TO-01A	DPP8	chr15	65766547	-	TRPM1	chr15	31327877	-
5CDS-5UTR	ENST00000230449	ENST00000410107		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000230449	ENST00000397423		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000230449	ENST00000495262		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000230449	ENST00000379597		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000230449	ENST00000316170		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000230449	ENST00000265012		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-5UTR	ENST00000448181	ENST00000410107		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000448181	ENST00000397423		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000448181	ENST00000495262		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000448181	ENST00000379597		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000448181	ENST00000316170		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
5CDS-intron	ENST00000448181	ENST00000265012		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
intron-5UTR	ENST00000475028	ENST00000410107		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
intron-intron	ENST00000475028	ENST00000397423		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
intron-intron	ENST00000475028	ENST00000495262		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
intron-intron	ENST00000475028	ENST00000379597		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
intron-intron	ENST00000475028	ENST00000316170		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
intron-intron	ENST00000475028	ENST00000265012		TCGA	LD	SARC	TCGA-FX-A3TO-01A	EXOC2	chr6	532469	-	GCNT2	chr6	10509320	+
Frame-shit	ENST00000316623	ENST00000399231		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
Frame-shit	ENST00000316623	ENST00000356338		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
Frame-shit	ENST00000316623	ENST00000358212		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
Frame-shit	ENST00000316623	ENST00000399233		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
Frame-shit	ENST00000316623	ENST00000553916		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000561429	ENST00000399231		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000561429	ENST00000356338		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000561429	ENST00000358212		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000561429	ENST00000399233		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000561429	ENST00000553916		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000560355	ENST00000399231		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000560355	ENST00000356338		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000560355	ENST00000358212		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000560355	ENST00000399233		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
intron-3CDS	ENST00000560355	ENST00000553916		TCGA	LD	SARC	TCGA-FX-A3TO-01A	FBN1	chr15	48744759	-	MYO5A	chr15	52725482	-
In-frame	ENST00000381971	ENST00000361337		TCGA	LD	SARC	TCGA-FX-A3TO-01A	GLIS3	chr9	4286038	-	TOP1	chr20	39690034	+
intron-3CDS	ENST00000324333	ENST00000361337		TCGA	LD	SARC	TCGA-FX-A3TO-01A	GLIS3	chr9	4286038	-	TOP1	chr20	39690034	+
intron-3CDS	ENST00000461870	ENST00000361337		TCGA	LD	SARC	TCGA-FX-A3TO-01A	GLIS3	chr9	4286038	-	TOP1	chr20	39690034	+
5CDS-intron	ENST00000377809	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377809	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377809	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377809	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000402010	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000402010	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000402010	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000402010	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000413835	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000413835	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000413835	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000413835	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377810	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377810	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377810	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000377810	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000315032	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000315032	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000315032	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000315032	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000508192	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000508192	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000508192	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000508192	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000361128	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000361128	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000361128	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000361128	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000350490	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000350490	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000350490	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000350490	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000502399	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000502399	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000502399	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000502399	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000509502	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000509502	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000509502	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000509502	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000513765	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000513765	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000513765	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000513765	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000408948	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000408948	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000408948	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000408948	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000425897	ENST00000533760		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000425897	ENST00000397957		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000425897	ENST00000316851		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
5CDS-intron	ENST00000425897	ENST00000401611		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MARK2	chr11	63663105	+	NCAM1	chr11	113004171	+
Frame-shit	ENST00000395811	ENST00000326005		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000395811	ENST00000560258		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-intron	ENST00000395811	ENST00000559753		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-5UTR	ENST00000395811	ENST00000560837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000444976	ENST00000326005		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000444976	ENST00000560258		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-intron	ENST00000444976	ENST00000559753		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-5UTR	ENST00000444976	ENST00000560837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000395804	ENST00000326005		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000395804	ENST00000560258		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-intron	ENST00000395804	ENST00000559753		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-5UTR	ENST00000395804	ENST00000560837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000341712	ENST00000326005		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000341712	ENST00000560258		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-intron	ENST00000341712	ENST00000559753		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-5UTR	ENST00000341712	ENST00000560837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000395806	ENST00000326005		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
Frame-shit	ENST00000395806	ENST00000560258		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-intron	ENST00000395806	ENST00000559753		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-5UTR	ENST00000395806	ENST00000560837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
3UTR-3CDS	ENST00000395807	ENST00000326005		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
3UTR-3CDS	ENST00000395807	ENST00000560258		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
3UTR-intron	ENST00000395807	ENST00000559753		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
3UTR-5UTR	ENST00000395807	ENST00000560837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	MPRIP	chr17	16946285	+	OAZ2	chr15	64983790	-
5CDS-5UTR	ENST00000268712	ENST00000378449		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000268712	ENST00000433649		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000268712	ENST00000268876		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000268712	ENST00000394570		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000268712	ENST00000591048		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395851	ENST00000378449		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395851	ENST00000433649		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395851	ENST00000268876		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395851	ENST00000394570		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395851	ENST00000591048		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
intron-5UTR	ENST00000395857	ENST00000378449		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
intron-5UTR	ENST00000395857	ENST00000433649		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
intron-5UTR	ENST00000395857	ENST00000268876		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
intron-5UTR	ENST00000395857	ENST00000394570		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
intron-5UTR	ENST00000395857	ENST00000591048		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395848	ENST00000378449		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395848	ENST00000433649		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395848	ENST00000268876		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395848	ENST00000394570		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-5UTR	ENST00000395848	ENST00000591048		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5UTR-5UTR	ENST00000583226	ENST00000378449		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5UTR-5UTR	ENST00000583226	ENST00000433649		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5UTR-5UTR	ENST00000583226	ENST00000268876		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5UTR-5UTR	ENST00000583226	ENST00000394570		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5UTR-5UTR	ENST00000583226	ENST00000591048		TCGA	LD	SARC	TCGA-FX-A3TO-01A	NCOR1	chr17	16021202	-	UNC45B	chr17	33475283	+
5CDS-intron	ENST00000300289	ENST00000534836		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000300289	ENST00000541045		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000300289	ENST00000536908		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000300289	ENST00000378738		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000300289	ENST00000394832		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000300289	ENST00000320856		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5CDS-intron	ENST00000300289	ENST00000394835		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000534836		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000541045		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000536908		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000378738		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000394832		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000320856		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
3UTR-intron	ENST00000469684	ENST00000394835		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000534836		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000541045		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000536908		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000378738		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000394832		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000320856		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
5UTR-intron	ENST00000538521	ENST00000394835		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PDIA3	chr15	44038904	+	EFCAB5	chr17	28418889	+
intron-intron	ENST00000315392	ENST00000538928		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000584529		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000290866		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000428043		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000490216		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000577647		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000290863		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000421982		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000315392	ENST00000413513		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000538928		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000584529		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000290866		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000428043		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000490216		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000577647		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000290863		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000421982		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000493200	ENST00000413513		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000538928		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000584529		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000290866		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000428043		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000490216		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000577647		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000290863		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000421982		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000539608	ENST00000413513		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000538928		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000584529		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000290866		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000428043		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000490216		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000577647		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000290863		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000421982		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
5CDS-intron	ENST00000444911	ENST00000413513		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000538928		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000584529		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000290866		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000428043		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000490216		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000577647		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000290863		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000421982		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-intron	ENST00000394316	ENST00000413513		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PLXDC1	chr17	37308799	-	ACE	chr17	61566009	+
intron-5UTR	ENST00000453279	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	POM121C	chr7	75113475	-	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000257665	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	POM121C	chr7	75113475	-	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000473168	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	POM121C	chr7	75113475	-	TMEM248	chr7	66406835	+
5UTR-5UTR	ENST00000496391	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRKRIP1	chr7	102006523	+	TMEM248	chr7	66406835	+
3UTR-5UTR	ENST00000482465	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRKRIP1	chr7	102006523	+	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000462601	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRKRIP1	chr7	102006523	+	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000397912	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRKRIP1	chr7	102006523	+	TMEM248	chr7	66406835	+
intron-5UTR	ENST00000354783	ENST00000341567		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRKRIP1	chr7	102006523	+	TMEM248	chr7	66406835	+
5CDS-3UTR	ENST00000419071	ENST00000441293		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000314728		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000347697		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000395618		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000575595		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000395620		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000395626		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000419071	ENST00000571254		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-3UTR	ENST00000268835	ENST00000441293		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000314728		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000347697		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000395618		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000575595		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000395620		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000395626		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000268835	ENST00000571254		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-3UTR	ENST00000536323	ENST00000441293		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000314728		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000347697		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000395618		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000575595		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000395620		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000395626		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000536323	ENST00000571254		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-3UTR	ENST00000542013	ENST00000441293		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000314728		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000347697		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000395618		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000575595		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000395620		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000395626		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
5CDS-intron	ENST00000542013	ENST00000571254		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-3UTR	ENST00000575337	ENST00000441293		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000314728		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000347697		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000395618		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000575595		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000395620		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000395626		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
intron-intron	ENST00000575337	ENST00000571254		TCGA	LD	SARC	TCGA-FX-A3TO-01A	PRPSAP2	chr17	18781183	+	EPN2	chr17	19177364	+
Frame-shit	ENST00000558480	ENST00000261917		TCGA	LD	SARC	TCGA-FX-A3TO-01A	RASGRF1	chr15	79264208	-	HCN4	chr15	73636149	-
Frame-shit	ENST00000419573	ENST00000261917		TCGA	LD	SARC	TCGA-FX-A3TO-01A	RASGRF1	chr15	79264208	-	HCN4	chr15	73636149	-
intron-3CDS	ENST00000560334	ENST00000261917		TCGA	LD	SARC	TCGA-FX-A3TO-01A	RASGRF1	chr15	79264208	-	HCN4	chr15	73636149	-
In-frame	ENST00000394745	ENST00000261917		TCGA	LD	SARC	TCGA-FX-A3TO-01A	RASGRF1	chr15	79264208	-	HCN4	chr15	73636149	-
5UTR-3CDS	ENST00000361781	ENST00000374056		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
5UTR-3CDS	ENST00000361781	ENST00000412531		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
intron-3CDS	ENST00000429490	ENST00000374056		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
intron-3CDS	ENST00000429490	ENST00000412531		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
intron-3CDS	ENST00000492601	ENST00000374056		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
intron-3CDS	ENST00000492601	ENST00000412531		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
intron-3CDS	ENST00000361543	ENST00000374056		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
intron-3CDS	ENST00000361543	ENST00000412531		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SGMS1	chr10	52193236	-	AGAP6	chr10	51764445	+
5UTR-intron	ENST00000249647	ENST00000539484		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000249647	ENST00000327925		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
3UTR-intron	ENST00000566141	ENST00000539484		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
3UTR-intron	ENST00000566141	ENST00000327925		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000564153	ENST00000539484		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000564153	ENST00000327925		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000349777	ENST00000539484		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000349777	ENST00000327925		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000567094	ENST00000539484		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
5UTR-intron	ENST00000567094	ENST00000327925		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
intron-intron	ENST00000397138	ENST00000539484		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
intron-intron	ENST00000397138	ENST00000327925		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SNAP23	chr15	42787911	+	CCDC144NL	chr17	20796775	-
Frame-shit	ENST00000354725	ENST00000405709		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000354725	ENST00000331762		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000354725	ENST00000452895		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
In-frame	ENST00000354725	ENST00000415362		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000354725	ENST00000447215		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000354725	ENST00000437687		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000354725	ENST00000489381		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000354725	ENST00000450877		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000405709		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000331762		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000452895		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000467238	ENST00000415362		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000467238	ENST00000447215		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000467238	ENST00000437687		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000467238	ENST00000489381		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000467238	ENST00000450877		TCGA	LD	SARC	TCGA-FX-A3TO-01A	SND1	chr7	127569382	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000358409	ENST00000543086		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000358409	ENST00000546231		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000358409	ENST00000397203		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000358409	ENST00000360905		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000358409	ENST00000589028		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000358409	ENST00000355446		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-intron	ENST00000358409	ENST00000536573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000359864	ENST00000543086		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000359864	ENST00000546231		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000359864	ENST00000397203		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000359864	ENST00000360905		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000359864	ENST00000589028		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000359864	ENST00000355446		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-intron	ENST00000359864	ENST00000536573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000397122	ENST00000543086		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000397122	ENST00000546231		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000397122	ENST00000397203		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000397122	ENST00000360905		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000397122	ENST00000589028		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000397122	ENST00000355446		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-intron	ENST00000397122	ENST00000536573		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TEAD4	chr12	3069362	+	ERC1	chr12	1553728	+
intron-3CDS	ENST00000561311	ENST00000249837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000561311	ENST00000261517		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000561311	ENST00000395896		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000561311	ENST00000395898		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-intron	ENST00000561311	ENST00000558919		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000306829	ENST00000249837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000306829	ENST00000261517		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000306829	ENST00000395896		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000306829	ENST00000395898		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-intron	ENST00000306829	ENST00000558919		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000559908	ENST00000249837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000559908	ENST00000261517		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000559908	ENST00000395896		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000559908	ENST00000395898		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-intron	ENST00000559908	ENST00000558919		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000472902	ENST00000249837		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000472902	ENST00000261517		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000472902	ENST00000395896		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-3CDS	ENST00000472902	ENST00000395898		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
intron-intron	ENST00000472902	ENST00000558919		TCGA	LD	SARC	TCGA-FX-A3TO-01A	TLN2	chr15	62682884	+	VPS13C	chr15	62259646	-
Frame-shit	ENST00000249837	ENST00000220325		TCGA	LD	SARC	TCGA-FX-A3TO-01A	VPS13C	chr15	62256898	-	EHD4	chr15	42246138	-
Frame-shit	ENST00000261517	ENST00000220325		TCGA	LD	SARC	TCGA-FX-A3TO-01A	VPS13C	chr15	62256898	-	EHD4	chr15	42246138	-
Frame-shit	ENST00000395896	ENST00000220325		TCGA	LD	SARC	TCGA-FX-A3TO-01A	VPS13C	chr15	62256898	-	EHD4	chr15	42246138	-
Frame-shit	ENST00000395898	ENST00000220325		TCGA	LD	SARC	TCGA-FX-A3TO-01A	VPS13C	chr15	62256898	-	EHD4	chr15	42246138	-
intron-3CDS	ENST00000558919	ENST00000220325		TCGA	LD	SARC	TCGA-FX-A3TO-01A	VPS13C	chr15	62256898	-	EHD4	chr15	42246138	-
intron-3CDS	ENST00000303657	ENST00000539909		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000303657	ENST00000286621		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000303657	ENST00000372734		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000303657	ENST00000541550		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-intron	ENST00000303657	ENST00000467840		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000359161	ENST00000539909		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000359161	ENST00000286621		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000359161	ENST00000372734		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000359161	ENST00000541550		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-intron	ENST00000359161	ENST00000467840		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000592546	ENST00000539909		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000592546	ENST00000286621		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000592546	ENST00000372734		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-3CDS	ENST00000592546	ENST00000541550		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
intron-intron	ENST00000592546	ENST00000467840		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000587700	ENST00000539909		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000587700	ENST00000286621		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000587700	ENST00000372734		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
5UTR-3CDS	ENST00000587700	ENST00000541550		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
5UTR-intron	ENST00000587700	ENST00000467840		TCGA	LD	SARC	TCGA-FX-A48G-01A	RFX2	chr19	6199487	-	ADK	chr10	76429941	+
5CDS-intron	ENST00000372837	ENST00000370584		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-5UTR	ENST00000372837	ENST00000314594		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-5UTR	ENST00000372837	ENST00000298999		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-intron	ENST00000372837	ENST00000370586		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-intron	ENST00000372833	ENST00000370584		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-5UTR	ENST00000372833	ENST00000314594		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-5UTR	ENST00000372833	ENST00000298999		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-intron	ENST00000372833	ENST00000370586		TCGA	LD	SARC	TCGA-FX-A76Y-01A	CHCHD1	chr10	75542199	+	R3HCC1L	chr10	99915850	+
5CDS-intron	ENST00000370489	ENST00000282018		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ENTPD7	chr10	101448507	+	CYSLTR2	chr13	49265348	+
5CDS-intron	ENST00000375431	ENST00000427662		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375431	ENST00000369774		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375431	ENST00000355946		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375431	ENST00000315994		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375431	ENST00000540321		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375431	ENST00000538130		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000326039	ENST00000427662		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000326039	ENST00000369774		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000326039	ENST00000355946		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000326039	ENST00000315994		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000326039	ENST00000540321		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000326039	ENST00000538130		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375430	ENST00000427662		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375430	ENST00000369774		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375430	ENST00000355946		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375430	ENST00000315994		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375430	ENST00000540321		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-intron	ENST00000375430	ENST00000538130		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
intron-intron	ENST00000476439	ENST00000427662		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
intron-intron	ENST00000476439	ENST00000369774		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
intron-intron	ENST00000476439	ENST00000355946		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
intron-intron	ENST00000476439	ENST00000315994		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
intron-intron	ENST00000476439	ENST00000540321		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
intron-intron	ENST00000476439	ENST00000538130		TCGA	LD	SARC	TCGA-FX-A76Y-01A	GRTP1	chr13	113999178	-	SH3PXD2A	chr10	105526927	-
5CDS-5UTR	ENST00000404771	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000404771	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000404771	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000372440	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000372440	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000372440	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000372443	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000372443	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000372443	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000286628	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000286628	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000286628	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000286627	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000286627	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000286627	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000354353	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000354353	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000354353	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000404857	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000404857	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000404857	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000406533	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000406533	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-5UTR	ENST00000406533	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000484507	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000484507	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000484507	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000481070	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000481070	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000481070	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000480683	ENST00000378720		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000480683	ENST00000378697		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
intron-5UTR	ENST00000480683	ENST00000495654		TCGA	LD	SARC	TCGA-FX-A76Y-01A	KCNMA1	chr10	79163620	-	ESD	chr13	47367579	-
5CDS-intron	ENST00000587539	ENST00000408915		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000402589		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000339686		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000436012		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000414866		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000480502		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000467637		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000429837		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000419602		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000462126		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000443640		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000472252		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000492341		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000602781		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000474928		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000488892		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000461300		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000447113		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000392206		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000440396		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000458071		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000418261		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000424570		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5CDS-intron	ENST00000587539	ENST00000451297		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000408915		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000402589		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000339686		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000436012		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000414866		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000480502		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000467637		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000429837		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000419602		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000462126		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000443640		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000472252		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000492341		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000602781		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000474928		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000488892		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000461300		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000447113		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000392206		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000440396		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000458071		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000418261		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000424570		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
intron-intron	ENST00000324394	ENST00000451297		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000408915		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000402589		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000339686		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000436012		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000414866		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000480502		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000467637		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000429837		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000419602		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000462126		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000443640		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000472252		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000492341		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000602781		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000474928		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000488892		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000461300		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000447113		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000392206		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000440396		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000458071		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000418261		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000424570		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
5UTR-intron	ENST00000588094	ENST00000451297		TCGA	LD	SARC	TCGA-FX-A76Y-01A	ZNF404	chr19	44388108	-	DMKN	chr19	35997087	-
In-frame	ENST00000415083	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000415083	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542420	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542743	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000539849	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000269137	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000545952	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000336777		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000337502		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-5UTR	ENST00000585241	ENST00000476392		TCGA	LD	SARC	TCGA-FX-A8OO-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-intron	ENST00000510325	ENST00000546087		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-3UTR	ENST00000510325	ENST00000538183		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000510325	ENST00000367055		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000510325	ENST00000367054		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000510325	ENST00000444946		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000510325	ENST00000337404		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000510325	ENST00000452684		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000510325	ENST00000535372		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000546087		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-3UTR	ENST00000359359	ENST00000538183		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000367055		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000367054		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000444946		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000337404		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000452684		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000359359	ENST00000535372		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000546087		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-3UTR	ENST00000480824	ENST00000538183		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000367055		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000367054		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000444946		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000337404		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000452684		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
3UTR-intron	ENST00000480824	ENST00000535372		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000546087		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-3UTR	ENST00000355190	ENST00000538183		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000367055		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000367054		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000444946		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000337404		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000452684		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000355190	ENST00000535372		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000546087		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-3UTR	ENST00000373685	ENST00000538183		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000367055		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000367054		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000444946		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000337404		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000452684		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
intron-intron	ENST00000373685	ENST00000535372		TCGA	LD	SARC	TCGA-HB-A2OT-01A	C6orf89	chr6	36894637	+	SOD2	chr6	160100839	-
In-frame	ENST00000357260	ENST00000376223		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000357260	ENST00000482265		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
In-frame	ENST00000534365	ENST00000376223		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000534365	ENST00000482265		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
intron-3CDS	ENST00000444059	ENST00000376223		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
intron-5UTR	ENST00000444059	ENST00000482265		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
intron-3CDS	ENST00000412270	ENST00000376223		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
intron-5UTR	ENST00000412270	ENST00000482265		TCGA	LD	SARC	TCGA-HB-A2OT-01A	FAM212B	chr1	112281808	-	DHRS3	chr1	12640694	-
5CDS-5UTR	ENST00000377694	ENST00000378566		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000603301		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000488109		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000322813		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000605244		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000378561		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000378557		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000378554		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
5CDS-5UTR	ENST00000377694	ENST00000605392		TCGA	LD	SARC	TCGA-HB-A2OT-01A	IGFBPL1	chr9	38413234	-	FAM214B	chr9	35108734	-
In-frame	ENST00000293379	ENST00000372330		TCGA	LD	SARC	TCGA-HB-A2OT-01A	ITGA5	chr12	54805618	-	MMP9	chr20	44642763	+
intron-3CDS	ENST00000547744	ENST00000372330		TCGA	LD	SARC	TCGA-HB-A2OT-01A	ITGA5	chr12	54805618	-	MMP9	chr20	44642763	+
5CDS-5UTR	ENST00000382778	ENST00000515037		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000382778	ENST00000358869		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-intron	ENST00000382778	ENST00000513966		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000351808	ENST00000515037		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000351808	ENST00000358869		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-intron	ENST00000351808	ENST00000513966		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000319980	ENST00000515037		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000319980	ENST00000358869		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-intron	ENST00000319980	ENST00000513966		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000537103	ENST00000515037		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-5UTR	ENST00000537103	ENST00000358869		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
5CDS-intron	ENST00000537103	ENST00000513966		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
intron-5UTR	ENST00000461115	ENST00000515037		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
intron-5UTR	ENST00000461115	ENST00000358869		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
intron-intron	ENST00000461115	ENST00000513966		TCGA	LD	SARC	TCGA-HB-A3L4-01A	IFT88	chr13	21157158	+	FAM114A1	chr4	38907143	+
intron-3CDS	ENST00000373344	ENST00000253577		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000373344	ENST00000339447		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000373344	ENST00000373394		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000373344	ENST00000534570		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-3CDS	ENST00000395603	ENST00000253577		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000395603	ENST00000339447		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000395603	ENST00000373394		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000395603	ENST00000534570		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-3CDS	ENST00000480283	ENST00000253577		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000480283	ENST00000339447		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000480283	ENST00000373394		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000480283	ENST00000534570		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-3CDS	ENST00000373341	ENST00000253577		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000373341	ENST00000339447		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000373341	ENST00000373394		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
intron-intron	ENST00000373341	ENST00000534570		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ATRX	chrX	77041332	-	ABCB7	chrX	74318897	-
5CDS-5UTR	ENST00000520429	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000520429	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000520429	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000369220	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000369220	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000369220	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000520371	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000520371	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000520371	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
intron-5UTR	ENST00000523799	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
intron-5UTR	ENST00000523799	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
intron-5UTR	ENST00000523799	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5UTR-5UTR	ENST00000523985	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5UTR-5UTR	ENST00000523985	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5UTR-5UTR	ENST00000523985	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000518714	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000518714	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000518714	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5UTR-5UTR	ENST00000521017	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5UTR-5UTR	ENST00000521017	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5UTR-5UTR	ENST00000521017	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000482541	ENST00000604270		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000482541	ENST00000603053		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
5CDS-5UTR	ENST00000482541	ENST00000493463		TCGA	LD	SARC	TCGA-HB-A3YV-01A	CCNC	chr6	100016372	-	ERVW-1	chr7	92098259	-
3UTR-3CDS	ENST00000428783	ENST00000595483		TCGA	LD	SARC	TCGA-HB-A3YV-01A	EEF1DP3	chr13	32421076	+	BLVRB	chr19	40964452	-
3UTR-3CDS	ENST00000428783	ENST00000263368		TCGA	LD	SARC	TCGA-HB-A3YV-01A	EEF1DP3	chr13	32421076	+	BLVRB	chr19	40964452	-
Frame-shit	ENST00000389677	ENST00000552032		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000389677	ENST00000547771		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000389677	ENST00000299350		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000389677	ENST00000535034		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000538471	ENST00000552032		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000538471	ENST00000547771		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000538471	ENST00000299350		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000538471	ENST00000535034		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000461803	ENST00000552032		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000461803	ENST00000547771		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000461803	ENST00000299350		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000461803	ENST00000535034		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FAXC	chr6	99781227	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000325888	ENST00000304636		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FLNC	chr7	128482752	+	COL3A1	chr2	189871071	+
5CDS-intron	ENST00000325888	ENST00000317840		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FLNC	chr7	128482752	+	COL3A1	chr2	189871071	+
Frame-shit	ENST00000346177	ENST00000304636		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FLNC	chr7	128482752	+	COL3A1	chr2	189871071	+
5CDS-intron	ENST00000346177	ENST00000317840		TCGA	LD	SARC	TCGA-HB-A3YV-01A	FLNC	chr7	128482752	+	COL3A1	chr2	189871071	+
In-frame	ENST00000367739	ENST00000427025		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
In-frame	ENST00000367739	ENST00000343505		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5CDS-intron	ENST00000367739	ENST00000479393		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
intron-3CDS	ENST00000543628	ENST00000427025		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
intron-3CDS	ENST00000543628	ENST00000343505		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
intron-intron	ENST00000543628	ENST00000479393		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5UTR-3CDS	ENST00000367735	ENST00000427025		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5UTR-3CDS	ENST00000367735	ENST00000343505		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5UTR-intron	ENST00000367735	ENST00000479393		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5UTR-3CDS	ENST00000478333	ENST00000427025		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5UTR-3CDS	ENST00000478333	ENST00000343505		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
5UTR-intron	ENST00000478333	ENST00000479393		TCGA	LD	SARC	TCGA-HB-A3YV-01A	IFNGR1	chr6	137540380	-	NHSL1	chr6	138768330	-
In-frame	ENST00000529443	ENST00000281182		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000529443	ENST00000537423		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-5UTR	ENST00000529443	ENST00000543332		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000529443	ENST00000374752		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000529443	ENST00000524547		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
In-frame	ENST00000299106	ENST00000281182		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000299106	ENST00000537423		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-5UTR	ENST00000299106	ENST00000543332		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000299106	ENST00000374752		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000299106	ENST00000524547		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
In-frame	ENST00000441717	ENST00000281182		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000441717	ENST00000537423		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-5UTR	ENST00000441717	ENST00000543332		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000441717	ENST00000374752		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
5CDS-intron	ENST00000441717	ENST00000524547		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
intron-3CDS	ENST00000524969	ENST00000281182		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
intron-intron	ENST00000524969	ENST00000537423		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
intron-5UTR	ENST00000524969	ENST00000543332		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
intron-intron	ENST00000524969	ENST00000374752		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
intron-intron	ENST00000524969	ENST00000524547		TCGA	LD	SARC	TCGA-HB-A3YV-01A	JAM3	chr11	133939054	+	ACAD8	chr11	134126442	+
In-frame	ENST00000509479	ENST00000239374		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
In-frame	ENST00000509479	ENST00000367290		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
5CDS-intron	ENST00000509479	ENST00000544131		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
In-frame	ENST00000327122	ENST00000239374		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
In-frame	ENST00000327122	ENST00000367290		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
5CDS-intron	ENST00000327122	ENST00000544131		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
intron-3CDS	ENST00000398940	ENST00000239374		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
intron-3CDS	ENST00000398940	ENST00000367290		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
intron-intron	ENST00000398940	ENST00000544131		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MAML3	chr4	140810511	-	CCDC170	chr6	151869439	+
Frame-shit	ENST00000338882	ENST00000450536		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
Frame-shit	ENST00000338882	ENST00000367663		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
Frame-shit	ENST00000338882	ENST00000409812		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
Frame-shit	ENST00000338882	ENST00000258062		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
Frame-shit	ENST00000338882	ENST00000415951		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
5CDS-intron	ENST00000338882	ENST00000531675		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
intron-3CDS	ENST00000490043	ENST00000450536		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
intron-3CDS	ENST00000490043	ENST00000367663		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
intron-3CDS	ENST00000490043	ENST00000409812		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
intron-3CDS	ENST00000490043	ENST00000258062		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
intron-3CDS	ENST00000490043	ENST00000415951		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
intron-intron	ENST00000490043	ENST00000531675		TCGA	LD	SARC	TCGA-HB-A3YV-01A	METTL24	chr6	110679158	-	REPS1	chr6	139251235	-
In-frame	ENST00000402693	ENST00000276204		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MEX3D	chr19	1567463	-	DOCK11	chrX	117676688	+
In-frame	ENST00000402693	ENST00000276202		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MEX3D	chr19	1567463	-	DOCK11	chrX	117676688	+
In-frame	ENST00000388824	ENST00000276204		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MEX3D	chr19	1567463	-	DOCK11	chrX	117676688	+
In-frame	ENST00000388824	ENST00000276202		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MEX3D	chr19	1567463	-	DOCK11	chrX	117676688	+
5CDS-5UTR	ENST00000372133	ENST00000548553		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MRPS18A	chr6	43648826	-	METTL7A	chr12	51318450	+
5CDS-intron	ENST00000372133	ENST00000332160		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MRPS18A	chr6	43648826	-	METTL7A	chr12	51318450	+
5CDS-5UTR	ENST00000372116	ENST00000548553		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MRPS18A	chr6	43648826	-	METTL7A	chr12	51318450	+
5CDS-intron	ENST00000372116	ENST00000332160		TCGA	LD	SARC	TCGA-HB-A3YV-01A	MRPS18A	chr6	43648826	-	METTL7A	chr12	51318450	+
5UTR-3CDS	ENST00000297689	ENST00000303617		TCGA	LD	SARC	TCGA-HB-A3YV-01A	NFIL3	chr9	94185922	-	AUH	chr9	93983274	-
5UTR-3CDS	ENST00000297689	ENST00000375731		TCGA	LD	SARC	TCGA-HB-A3YV-01A	NFIL3	chr9	94185922	-	AUH	chr9	93983274	-
5UTR-intron	ENST00000297689	ENST00000422391		TCGA	LD	SARC	TCGA-HB-A3YV-01A	NFIL3	chr9	94185922	-	AUH	chr9	93983274	-
5UTR-intron	ENST00000297689	ENST00000478465		TCGA	LD	SARC	TCGA-HB-A3YV-01A	NFIL3	chr9	94185922	-	AUH	chr9	93983274	-
intron-intron	ENST00000434900	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000372626		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000372625		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000469820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000372624		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL1	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000434900	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000520708	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000518759	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000360422	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000330432	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000428397	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000452687	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000229768	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000524163	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000419506	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000414028	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000435918	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
5CDS-intron	ENST00000337049	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000523520	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522555	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000372628		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000243286		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000372627		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-intron	ENST00000522236	ENST00000477014		TCGA	LD	SARC	TCGA-HB-A3YV-01A	OPRM1	chr6	154567894	+	TCEAL3	chrX	102884400	+
intron-3CDS	ENST00000367225	ENST00000367255		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000356820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000423061		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000448038		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000341594		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000265368		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000367253		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000367248		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000413186		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000466159		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000539504		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000347037		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000354674		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
intron-intron	ENST00000367225	ENST00000495090		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-3CDS	ENST00000206262	ENST00000367255		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000356820		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000423061		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000448038		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000341594		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000265368		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000367253		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000367248		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000413186		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000466159		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000539504		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000347037		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000354674		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
5UTR-intron	ENST00000206262	ENST00000495090		TCGA	LD	SARC	TCGA-HB-A3YV-01A	RGS17	chr6	153452259	-	SYNE1	chr6	152809638	-
Frame-shit	ENST00000539652	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000539652	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000539652	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000539652	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000539652	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000539652	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000556010	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000556010	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000556010	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000556010	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000556010	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000556010	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000358230	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000358230	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000358230	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000358230	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000358230	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000358230	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
intron-3CDS	ENST00000544599	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
intron-3CDS	ENST00000544599	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
intron-3CDS	ENST00000544599	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
intron-intron	ENST00000544599	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
intron-intron	ENST00000544599	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
intron-intron	ENST00000544599	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000286424	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000286424	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000286424	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000286424	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000286424	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000286424	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000398033	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000398033	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000398033	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000398033	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000398033	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000398033	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000542724	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000542724	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
Frame-shit	ENST00000542724	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000542724	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000542724	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000542724	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5UTR-3CDS	ENST00000535812	ENST00000335742		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5UTR-3CDS	ENST00000535812	ENST00000261509		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5UTR-3CDS	ENST00000535812	ENST00000505667		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5UTR-intron	ENST00000535812	ENST00000333488		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5UTR-intron	ENST00000535812	ENST00000512127		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5UTR-intron	ENST00000535812	ENST00000507735		TCGA	LD	SARC	TCGA-HB-A3YV-01A	TMBIM4	chr12	66563635	-	PALLD	chr4	169632732	+
5CDS-intron	ENST00000353364	ENST00000324472		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000353364	ENST00000413230		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000280377	ENST00000324472		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000280377	ENST00000413230		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000393654	ENST00000324472		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000393654	ENST00000413230		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
intron-intron	ENST00000550632	ENST00000324472		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
intron-intron	ENST00000550632	ENST00000413230		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000312635	ENST00000324472		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000312635	ENST00000413230		TCGA	LD	SARC	TCGA-HB-A3YV-01A	USP15	chr12	62719714	+	DPY19L2	chr12	63984907	-
5CDS-intron	ENST00000367545	ENST00000237289		TCGA	LD	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144747466	+	TNFAIP3	chr6	138188543	+
5CDS-intron	ENST00000367545	ENST00000485192		TCGA	LD	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144747466	+	TNFAIP3	chr6	138188543	+
intron-intron	ENST00000367526	ENST00000237289		TCGA	LD	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144747466	+	TNFAIP3	chr6	138188543	+
intron-intron	ENST00000367526	ENST00000485192		TCGA	LD	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144747466	+	TNFAIP3	chr6	138188543	+
intron-intron	ENST00000480333	ENST00000237289		TCGA	LD	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144747466	+	TNFAIP3	chr6	138188543	+
intron-intron	ENST00000480333	ENST00000485192		TCGA	LD	SARC	TCGA-HB-A3YV-01A	UTRN	chr6	144747466	+	TNFAIP3	chr6	138188543	+
5UTR-3CDS	ENST00000262291	ENST00000301634		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000262291	ENST00000405273		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000262291	ENST00000588734		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000262291	ENST00000590862		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000262291	ENST00000590430		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000537567	ENST00000301634		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000537567	ENST00000405273		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000537567	ENST00000588734		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000537567	ENST00000590862		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000537567	ENST00000590430		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000539763	ENST00000301634		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000539763	ENST00000405273		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000539763	ENST00000588734		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000539763	ENST00000590862		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000539763	ENST00000590430		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000536180	ENST00000301634		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000536180	ENST00000405273		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000536180	ENST00000588734		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000536180	ENST00000590862		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000536180	ENST00000590430		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000545362	ENST00000301634		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000545362	ENST00000405273		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000545362	ENST00000588734		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000545362	ENST00000590862		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
5UTR-3CDS	ENST00000545362	ENST00000590430		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
intron-3CDS	ENST00000588617	ENST00000301634		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
intron-3CDS	ENST00000588617	ENST00000405273		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
intron-3CDS	ENST00000588617	ENST00000588734		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
intron-3CDS	ENST00000588617	ENST00000590862		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
intron-3CDS	ENST00000588617	ENST00000590430		TCGA	LD	SARC	TCGA-HB-A3YV-01A	VMP1	chr17	57785109	+	TK1	chr17	76171699	-
Frame-shit	ENST00000376729	ENST00000342287		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
Frame-shit	ENST00000376729	ENST00000373487		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
Frame-shit	ENST00000376729	ENST00000373489		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000376729	ENST00000373483		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000376729	ENST00000447726		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000376729	ENST00000538998		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
Frame-shit	ENST00000218056	ENST00000342287		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
Frame-shit	ENST00000218056	ENST00000373487		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
Frame-shit	ENST00000218056	ENST00000373489		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000218056	ENST00000373483		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000218056	ENST00000447726		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000218056	ENST00000538998		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000492715	ENST00000342287		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000492715	ENST00000373487		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000492715	ENST00000373489		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-5UTR	ENST00000492715	ENST00000373483		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-5UTR	ENST00000492715	ENST00000447726		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-3UTR	ENST00000492715	ENST00000538998		TCGA	LD	SARC	TCGA-HB-A3YV-01A	WDR13	chrX	48462778	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000355834	ENST00000371460		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
intron-3CDS	ENST00000355834	ENST00000371459		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
intron-3CDS	ENST00000355834	ENST00000371461		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
intron-3CDS	ENST00000355834	ENST00000306867		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
intron-intron	ENST00000355834	ENST00000371458		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
intron-intron	ENST00000355834	ENST00000459689		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000538529	ENST00000371460		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000538529	ENST00000371459		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000538529	ENST00000371461		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000538529	ENST00000306867		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000538529	ENST00000371458		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000538529	ENST00000459689		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000337872	ENST00000371460		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000337872	ENST00000371459		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000337872	ENST00000371461		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
Frame-shit	ENST00000337872	ENST00000306867		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000337872	ENST00000371458		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000337872	ENST00000459689		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZBTB49	chr4	4317697	+	SUPT3H	chr6	44988369	-
5CDS-intron	ENST00000359019	ENST00000393240		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000359019	ENST00000261205		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000359019	ENST00000457153		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000359019	ENST00000552744		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-3UTR	ENST00000359019	ENST00000549454		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000334822	ENST00000393240		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000334822	ENST00000261205		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000334822	ENST00000457153		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000334822	ENST00000552744		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-3UTR	ENST00000334822	ENST00000549454		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000426126	ENST00000393240		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000426126	ENST00000261205		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000426126	ENST00000457153		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-intron	ENST00000426126	ENST00000552744		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
5CDS-3UTR	ENST00000426126	ENST00000549454		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
intron-intron	ENST00000550789	ENST00000393240		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
intron-intron	ENST00000550789	ENST00000261205		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
intron-intron	ENST00000550789	ENST00000457153		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
intron-intron	ENST00000550789	ENST00000552744		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
intron-3UTR	ENST00000550789	ENST00000549454		TCGA	LD	SARC	TCGA-HB-A3YV-01A	ZDHHC17	chr12	77199219	+	SYT1	chr12	79349242	+
In-frame	ENST00000347528	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000347528	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000347528	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000289734	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000289734	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000289734	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000379758	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000379758	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000379758	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000396942	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000396942	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000396942	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000396945	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000396945	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000396945	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000352337	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000352337	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000352337	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000265709	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
In-frame	ENST00000265709	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
5CDS-intron	ENST00000265709	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000457297	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000457297	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-intron	ENST00000457297	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000522231	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000522231	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-intron	ENST00000522231	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000522543	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000522543	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-intron	ENST00000522543	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000314214	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000314214	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-intron	ENST00000314214	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000521407	ENST00000315769		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-3CDS	ENST00000521407	ENST00000297737		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
intron-intron	ENST00000521407	ENST00000523823		TCGA	LD	SARC	TCGA-HB-A43Z-01A	ANK1	chr8	41566296	-	ZMAT4	chr8	40554920	-
Frame-shit	ENST00000288602	ENST00000275884		TCGA	LD	SARC	TCGA-HB-A43Z-01A	BRAF	chr7	140534409	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000288602	ENST00000537639		TCGA	LD	SARC	TCGA-HB-A43Z-01A	BRAF	chr7	140534409	-	DENND2A	chr7	140219518	-
Frame-shit	ENST00000288602	ENST00000496613		TCGA	LD	SARC	TCGA-HB-A43Z-01A	BRAF	chr7	140534409	-	DENND2A	chr7	140219518	-
5CDS-intron	ENST00000288602	ENST00000492720		TCGA	LD	SARC	TCGA-HB-A43Z-01A	BRAF	chr7	140534409	-	DENND2A	chr7	140219518	-
5CDS-5UTR	ENST00000521689	ENST00000401707		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000521689	ENST00000349693		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000254898	ENST00000401707		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000254898	ENST00000349693		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000524308	ENST00000401707		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000524308	ENST00000349693		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000522025	ENST00000401707		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000522025	ENST00000349693		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000520016	ENST00000401707		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
5CDS-5UTR	ENST00000520016	ENST00000349693		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
intron-5UTR	ENST00000518238	ENST00000401707		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
intron-5UTR	ENST00000518238	ENST00000349693		TCGA	LD	SARC	TCGA-HB-A43Z-01A	MATN2	chr8	98973758	+	POP1	chr8	99135564	+
Frame-shit	ENST00000406785	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000406785	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000406785	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000542756	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000542756	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000542756	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000403092	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000403092	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000403092	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000405901	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000405901	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000405901	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000402441	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000402441	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000402441	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
In-frame	ENST00000405269	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
In-frame	ENST00000405269	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
In-frame	ENST00000405269	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000542024	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000542024	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000542024	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000332839	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000332839	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000332839	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000406391	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000406391	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000406391	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000408028	ENST00000313117		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000408028	ENST00000446327		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
Frame-shit	ENST00000408028	ENST00000409276		TCGA	LD	SARC	TCGA-HB-A43Z-01A	SLC8A1	chr2	40655613	-	SRSF7	chr2	38977336	-
5CDS-3UTR	ENST00000543351	ENST00000593699		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000543351	ENST00000372499		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000543351	ENST00000496424		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000332211	ENST00000593699		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000332211	ENST00000372499		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000332211	ENST00000496424		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
3UTR-3UTR	ENST00000472137	ENST00000593699		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
3UTR-3UTR	ENST00000472137	ENST00000372499		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
3UTR-intron	ENST00000472137	ENST00000496424		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5UTR-3UTR	ENST00000535553	ENST00000593699		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5UTR-3UTR	ENST00000535553	ENST00000372499		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5UTR-intron	ENST00000535553	ENST00000496424		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000313132	ENST00000593699		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000313132	ENST00000372499		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000313132	ENST00000496424		TCGA	LD	SARC	TCGA-HB-A43Z-01A	VDAC2	chr10	76973828	+	C10orf11	chr10	77795766	+
Frame-shit	ENST00000368323	ENST00000535401		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-intron	ENST00000368323	ENST00000535185		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-intron	ENST00000368323	ENST00000299964		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000368323	ENST00000541754		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000368323	ENST00000542647		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000368323	ENST00000545255		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
In-frame	ENST00000539040	ENST00000535401		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-intron	ENST00000539040	ENST00000535185		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-intron	ENST00000539040	ENST00000299964		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000539040	ENST00000541754		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000539040	ENST00000542647		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000539040	ENST00000545255		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
Frame-shit	ENST00000368322	ENST00000535401		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-intron	ENST00000368322	ENST00000535185		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-intron	ENST00000368322	ENST00000299964		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000368322	ENST00000541754		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000368322	ENST00000542647		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
5CDS-5UTR	ENST00000368322	ENST00000545255		TCGA	LD	SARC	TCGA-HB-A5W3-01A	RIT1	chr1	155874102	-	NNMT	chr11	114182767	+
In-frame	ENST00000372725	ENST00000574590		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372725	ENST00000575318		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372725	ENST00000572904		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372725	ENST00000262419		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372725	ENST00000432791		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372725	ENST00000393476		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
5CDS-intron	ENST00000372725	ENST00000576248		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372724	ENST00000574590		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372724	ENST00000575318		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372724	ENST00000572904		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372724	ENST00000262419		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372724	ENST00000432791		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372724	ENST00000393476		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
5CDS-intron	ENST00000372724	ENST00000576248		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000287239	ENST00000574590		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000287239	ENST00000575318		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000287239	ENST00000572904		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000287239	ENST00000262419		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000287239	ENST00000432791		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000287239	ENST00000393476		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
5CDS-intron	ENST00000287239	ENST00000576248		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372714	ENST00000574590		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372714	ENST00000575318		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372714	ENST00000572904		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372714	ENST00000262419		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372714	ENST00000432791		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372714	ENST00000393476		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
5CDS-intron	ENST00000372714	ENST00000576248		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372711	ENST00000574590		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372711	ENST00000575318		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372711	ENST00000572904		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372711	ENST00000262419		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372711	ENST00000432791		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
In-frame	ENST00000372711	ENST00000393476		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
5CDS-intron	ENST00000372711	ENST00000576248		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000490365	ENST00000574590		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000490365	ENST00000575318		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000490365	ENST00000572904		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000490365	ENST00000262419		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000490365	ENST00000432791		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000490365	ENST00000393476		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-intron	ENST00000490365	ENST00000576248		TCGA	LD	SARC	TCGA-HS-A5N8-01A	KAT6B	chr10	76603236	+	KANSL1	chr17	44111651	-
intron-3CDS	ENST00000515359	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-5UTR	ENST00000515359	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-3UTR	ENST00000515359	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-3UTR	ENST00000515359	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3CDS	ENST00000308775	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-5UTR	ENST00000308775	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000308775	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000308775	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3CDS	ENST00000541308	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-5UTR	ENST00000541308	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000541308	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000541308	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3CDS	ENST00000539901	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-5UTR	ENST00000539901	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000539901	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000539901	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3CDS	ENST00000545947	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-5UTR	ENST00000545947	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000545947	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000545947	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3CDS	ENST00000538711	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-5UTR	ENST00000538711	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000538711	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
5UTR-3UTR	ENST00000538711	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-3CDS	ENST00000479935	ENST00000373625		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-5UTR	ENST00000479935	ENST00000537234		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-3UTR	ENST00000479935	ENST00000469790		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
intron-3UTR	ENST00000479935	ENST00000545542		TCGA	LD	SARC	TCGA-HS-A5N9-01A	DAG1	chr3	49507866	+	KPNA6	chr1	32620189	+
In-frame	ENST00000254321	ENST00000541222		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000254321	ENST00000316856		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000254321	ENST00000586534		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000254321	ENST00000592268		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
5CDS-intron	ENST00000254321	ENST00000588826		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000482090	ENST00000541222		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000482090	ENST00000316856		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-3CDS	ENST00000482090	ENST00000586534		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000482090	ENST00000592268		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
intron-intron	ENST00000482090	ENST00000588826		TCGA	LD	SARC	TCGA-HS-A5N9-01A	ZNF700	chr19	12036088	+	RAD23A	chr19	13063503	+
In-frame	ENST00000294732	ENST00000367412		TCGA	LD	SARC	TCGA-HS-A5NA-01A	ASPM	chr1	197111461	-	F13B	chr1	197008541	-
5CDS-intron	ENST00000294732	ENST00000490002		TCGA	LD	SARC	TCGA-HS-A5NA-01A	ASPM	chr1	197111461	-	F13B	chr1	197008541	-
In-frame	ENST00000367409	ENST00000367412		TCGA	LD	SARC	TCGA-HS-A5NA-01A	ASPM	chr1	197111461	-	F13B	chr1	197008541	-
5CDS-intron	ENST00000367409	ENST00000490002		TCGA	LD	SARC	TCGA-HS-A5NA-01A	ASPM	chr1	197111461	-	F13B	chr1	197008541	-
intron-3CDS	ENST00000367408	ENST00000367412		TCGA	LD	SARC	TCGA-HS-A5NA-01A	ASPM	chr1	197111461	-	F13B	chr1	197008541	-
intron-intron	ENST00000367408	ENST00000490002		TCGA	LD	SARC	TCGA-HS-A5NA-01A	ASPM	chr1	197111461	-	F13B	chr1	197008541	-
Frame-shit	ENST00000380958	ENST00000241453		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
Frame-shit	ENST00000380958	ENST00000380982		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
Frame-shit	ENST00000380958	ENST00000537084		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
5CDS-intron	ENST00000380958	ENST00000469894		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
5UTR-3CDS	ENST00000399613	ENST00000241453		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
5UTR-3CDS	ENST00000399613	ENST00000380982		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
5UTR-3CDS	ENST00000399613	ENST00000537084		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
5UTR-intron	ENST00000399613	ENST00000469894		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-3CDS	ENST00000282391	ENST00000241453		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-3CDS	ENST00000282391	ENST00000380982		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-3CDS	ENST00000282391	ENST00000537084		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-intron	ENST00000282391	ENST00000469894		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-3CDS	ENST00000483842	ENST00000241453		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-3CDS	ENST00000483842	ENST00000380982		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-3CDS	ENST00000483842	ENST00000537084		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
intron-intron	ENST00000483842	ENST00000469894		TCGA	LD	SARC	TCGA-HS-A5NA-01A	PAN3	chr13	28713224	+	FLT3	chr13	28636206	-
Frame-shit	ENST00000225402	ENST00000572933		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
Frame-shit	ENST00000225402	ENST00000389173		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
5CDS-intron	ENST00000225402	ENST00000570791		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
5CDS-intron	ENST00000225402	ENST00000082259		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000590321	ENST00000572933		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000590321	ENST00000389173		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
intron-intron	ENST00000590321	ENST00000570791		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
intron-intron	ENST00000590321	ENST00000082259		TCGA	LD	SARC	TCGA-IE-A3OV-01A	AATF	chr17	35388982	+	DNAH2	chr17	7733618	+
In-frame	ENST00000353139	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
In-frame	ENST00000353139	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
In-frame	ENST00000360679	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
In-frame	ENST00000360679	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
Frame-shit	ENST00000394406	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
Frame-shit	ENST00000394406	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
Frame-shit	ENST00000335166	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
Frame-shit	ENST00000335166	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000416895	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000416895	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
In-frame	ENST00000361253	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
In-frame	ENST00000361253	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000588142	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000588142	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000589665	ENST00000293272		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000589665	ENST00000366113		TCGA	LD	SARC	TCGA-IE-A3OV-01A	ACACA	chr17	35478277	-	CCL5	chr17	34199468	-
intron-3CDS	ENST00000273654	ENST00000265322		TCGA	LD	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180587835	-	PECR	chr2	216916268	-
intron-5UTR	ENST00000273654	ENST00000497889		TCGA	LD	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180587835	-	PECR	chr2	216916268	-
intron-3CDS	ENST00000442201	ENST00000265322		TCGA	LD	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180587835	-	PECR	chr2	216916268	-
intron-5UTR	ENST00000442201	ENST00000497889		TCGA	LD	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180587835	-	PECR	chr2	216916268	-
5UTR-3CDS	ENST00000485055	ENST00000265322		TCGA	LD	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180587835	-	PECR	chr2	216916268	-
5UTR-5UTR	ENST00000485055	ENST00000497889		TCGA	LD	SARC	TCGA-IE-A3OV-01A	CCDC39	chr3	180587835	-	PECR	chr2	216916268	-
5CDS-intron	ENST00000335255	ENST00000472876		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-5UTR	ENST00000335255	ENST00000395527		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-5UTR	ENST00000335255	ENST00000395529		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-5UTR	ENST00000335255	ENST00000261503		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-intron	ENST00000335255	ENST00000395530		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-intron	ENST00000335255	ENST00000536879		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-intron	ENST00000335255	ENST00000395522		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-intron	ENST00000335255	ENST00000395525		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
5CDS-intron	ENST00000335255	ENST00000584527		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000529652	ENST00000472876		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-5UTR	ENST00000529652	ENST00000395527		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-5UTR	ENST00000529652	ENST00000395529		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-5UTR	ENST00000529652	ENST00000261503		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000529652	ENST00000395530		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000529652	ENST00000536879		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000529652	ENST00000395522		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000529652	ENST00000395525		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000529652	ENST00000584527		TCGA	LD	SARC	TCGA-IE-A3OV-01A	FOXK2	chr17	80529746	+	SPECC1	chr17	19999944	+
intron-3CDS	ENST00000249299	ENST00000225737		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-3CDS	ENST00000249299	ENST00000395536		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-intron	ENST00000249299	ENST00000572155		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-3CDS	ENST00000424702	ENST00000225737		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-3CDS	ENST00000424702	ENST00000395536		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-intron	ENST00000424702	ENST00000572155		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-3CDS	ENST00000422760	ENST00000225737		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-3CDS	ENST00000422760	ENST00000395536		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
intron-intron	ENST00000422760	ENST00000572155		TCGA	LD	SARC	TCGA-IE-A3OV-01A	NAA38	chr17	7786553	-	AKAP10	chr17	19823431	-
In-frame	ENST00000573500	ENST00000259008		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
In-frame	ENST00000573500	ENST00000577598		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
5CDS-intron	ENST00000573500	ENST00000583837		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
intron-3CDS	ENST00000576221	ENST00000259008		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
intron-3CDS	ENST00000576221	ENST00000577598		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
intron-intron	ENST00000576221	ENST00000583837		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
In-frame	ENST00000268896	ENST00000259008		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
In-frame	ENST00000268896	ENST00000577598		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
5CDS-intron	ENST00000268896	ENST00000583837		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
In-frame	ENST00000576183	ENST00000259008		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
In-frame	ENST00000576183	ENST00000577598		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
5CDS-intron	ENST00000576183	ENST00000583837		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
intron-3CDS	ENST00000325214	ENST00000259008		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
intron-3CDS	ENST00000325214	ENST00000577598		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
intron-intron	ENST00000325214	ENST00000583837		TCGA	LD	SARC	TCGA-IE-A3OV-01A	PCTP	chr17	53828605	+	BRIP1	chr17	59861785	-
Frame-shit	ENST00000262158	ENST00000256413		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
Frame-shit	ENST00000262158	ENST00000382998		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
5CDS-intron	ENST00000262158	ENST00000592658		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
Frame-shit	ENST00000591805	ENST00000256413		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
Frame-shit	ENST00000591805	ENST00000382998		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
5CDS-intron	ENST00000591805	ENST00000592658		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
Frame-shit	ENST00000589634	ENST00000256413		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
Frame-shit	ENST00000589634	ENST00000382998		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
5CDS-intron	ENST00000589634	ENST00000592658		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
intron-3CDS	ENST00000585986	ENST00000256413		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
intron-3CDS	ENST00000585986	ENST00000382998		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
intron-intron	ENST00000585986	ENST00000592658		TCGA	LD	SARC	TCGA-IE-A3OV-01A	SMAD7	chr18	46474754	-	CTIF	chr18	46162985	+
intron-3CDS	ENST00000413465	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
intron-intron	ENST00000413465	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
intron-3CDS	ENST00000359597	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
intron-intron	ENST00000359597	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-3CDS	ENST00000269305	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-intron	ENST00000269305	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-3CDS	ENST00000455263	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-intron	ENST00000455263	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-3CDS	ENST00000420246	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-intron	ENST00000420246	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-3CDS	ENST00000445888	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
5UTR-intron	ENST00000445888	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
intron-3CDS	ENST00000574684	ENST00000335255		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
intron-intron	ENST00000574684	ENST00000529652		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	FOXK2	chr17	80543780	+
intron-3CDS	ENST00000413465	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000413465	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000413465	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-intron	ENST00000413465	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000359597	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000359597	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000359597	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-intron	ENST00000359597	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000269305	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000269305	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000269305	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-intron	ENST00000269305	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000455263	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000455263	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000455263	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-intron	ENST00000455263	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000420246	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000420246	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000420246	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-intron	ENST00000420246	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000445888	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000445888	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-3CDS	ENST00000445888	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
5UTR-intron	ENST00000445888	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000574684	ENST00000443584		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000574684	ENST00000449996		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-3CDS	ENST00000574684	ENST00000262406		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
intron-intron	ENST00000574684	ENST00000577186		TCGA	LD	SARC	TCGA-IE-A3OV-01A	TP53	chr17	7590695	-	RGS9	chr17	63186293	+
Frame-shit	ENST00000380420	ENST00000307355		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
Frame-shit	ENST00000380420	ENST00000359735		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
In-frame	ENST00000380420	ENST00000494380		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
Frame-shit	ENST00000380420	ENST00000440155		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380420	ENST00000440598		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380420	ENST00000437743		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380420	ENST00000430838		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380420	ENST00000397136		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
Frame-shit	ENST00000380421	ENST00000307355		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
Frame-shit	ENST00000380421	ENST00000359735		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
Frame-shit	ENST00000380421	ENST00000494380		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
In-frame	ENST00000380421	ENST00000440155		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380421	ENST00000440598		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380421	ENST00000437743		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380421	ENST00000430838		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
5CDS-3UTR	ENST00000380421	ENST00000397136		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3CDS	ENST00000476381	ENST00000307355		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3CDS	ENST00000476381	ENST00000359735		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3CDS	ENST00000476381	ENST00000494380		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3CDS	ENST00000476381	ENST00000440155		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3UTR	ENST00000476381	ENST00000440598		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3UTR	ENST00000476381	ENST00000437743		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3UTR	ENST00000476381	ENST00000430838		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
intron-3UTR	ENST00000476381	ENST00000397136		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	PIR	chrX	15415571	-	ZNF138	chr7	64291829	+
In-frame	ENST00000397821	ENST00000328747		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000397821	ENST00000431504		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000397821	ENST00000357512		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000397821	ENST00000450302		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-3CDS	ENST00000379716	ENST00000328747		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000379716	ENST00000431504		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000379716	ENST00000357512		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000379716	ENST00000450302		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
In-frame	ENST00000379698	ENST00000328747		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000379698	ENST00000431504		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000379698	ENST00000357512		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000379698	ENST00000450302		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-3CDS	ENST00000541422	ENST00000328747		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000541422	ENST00000431504		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000541422	ENST00000357512		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000541422	ENST00000450302		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
In-frame	ENST00000379697	ENST00000328747		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000379697	ENST00000431504		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000379697	ENST00000357512		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-intron	ENST00000379697	ENST00000450302		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-3CDS	ENST00000477102	ENST00000328747		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000477102	ENST00000431504		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000477102	ENST00000357512		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
intron-intron	ENST00000477102	ENST00000450302		TCGA	LD	SARC	TCGA-IE-A4EJ-01A	SH3KBP1	chrX	19701941	-	ZNF92	chr7	64852815	+
5CDS-5UTR	ENST00000397661	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000397661	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000592199	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000592199	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000587760	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000587760	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000585575	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000585575	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000360105	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000360105	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000588228	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000588228	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000587260	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000587260	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000358552	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
5CDS-5UTR	ENST00000358552	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
intron-5UTR	ENST00000588680	ENST00000419717		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
intron-5UTR	ENST00000588680	ENST00000545940		TCGA	LD	SARC	TCGA-IE-A4EK-01A	NFIX	chr19	13136366	+	ANHX	chr12	133810964	-
Frame-shit	ENST00000299300	ENST00000005284		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	CCT2	chr12	69979304	+	CACNG3	chr16	24372673	+
Frame-shit	ENST00000544368	ENST00000005284		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	CCT2	chr12	69979304	+	CACNG3	chr16	24372673	+
intron-3CDS	ENST00000543146	ENST00000005284		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	CCT2	chr12	69979304	+	CACNG3	chr16	24372673	+
5UTR-3CDS	ENST00000550487	ENST00000316623		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000550487	ENST00000561429		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000550487	ENST00000560355		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-3CDS	ENST00000317943	ENST00000316623		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000317943	ENST00000561429		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000317943	ENST00000560355		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-3CDS	ENST00000550654	ENST00000316623		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000550654	ENST00000561429		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000550654	ENST00000560355		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-3CDS	ENST00000548985	ENST00000316623		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000548985	ENST00000561429		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
5UTR-intron	ENST00000548985	ENST00000560355		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	COX14	chr12	50506084	+	FBN1	chr15	48762953	-
intron-3CDS	ENST00000571669	ENST00000250113		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	METTL16	chr17	2405498	-	FXR2	chr17	7507398	-
intron-intron	ENST00000571669	ENST00000573057		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	METTL16	chr17	2405498	-	FXR2	chr17	7507398	-
Frame-shit	ENST00000263092	ENST00000250113		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	METTL16	chr17	2405498	-	FXR2	chr17	7507398	-
5CDS-intron	ENST00000263092	ENST00000573057		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	METTL16	chr17	2405498	-	FXR2	chr17	7507398	-
5UTR-3CDS	ENST00000538844	ENST00000250113		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	METTL16	chr17	2405498	-	FXR2	chr17	7507398	-
5UTR-intron	ENST00000538844	ENST00000573057		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	METTL16	chr17	2405498	-	FXR2	chr17	7507398	-
In-frame	ENST00000367302	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000367302	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000367296	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000367296	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000295624	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000295624	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000367297	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000367297	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000367300	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
5CDS-intron	ENST00000367300	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
intron-3CDS	ENST00000367295	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
intron-intron	ENST00000367295	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
intron-3CDS	ENST00000469130	ENST00000367287		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
intron-intron	ENST00000469130	ENST00000482943		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	NAV1	chr1	201687883	+	TIMM17A	chr1	201926409	+
In-frame	ENST00000560606	ENST00000300030		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000560606	ENST00000558779		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000560606	ENST00000380290		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000560606	ENST00000557835		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000560606	ENST00000559950		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
Frame-shit	ENST00000300069	ENST00000300030		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000300069	ENST00000558779		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000300069	ENST00000380290		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000300069	ENST00000557835		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
5CDS-intron	ENST00000300069	ENST00000559950		TCGA	LD	SARC	TCGA-IE-A6BZ-01A	RBPMS2	chr15	65040618	-	FAM96A	chr15	64367736	-
Frame-shit	ENST00000367618	ENST00000256339		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
Frame-shit	ENST00000367618	ENST00000555664		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
Frame-shit	ENST00000367618	ENST00000553484		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
Frame-shit	ENST00000367618	ENST00000393151		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000457238	ENST00000256339		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000457238	ENST00000555664		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000457238	ENST00000553484		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000457238	ENST00000393151		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000461179	ENST00000256339		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000461179	ENST00000555664		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000461179	ENST00000553484		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
intron-3CDS	ENST00000461179	ENST00000393151		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	AXDND1	chr1	179504097	+	UNC79	chr14	94170971	+
5CDS-intron	ENST00000229195	ENST00000359019		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-intron	ENST00000229195	ENST00000334822		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-intron	ENST00000229195	ENST00000426126		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-3UTR	ENST00000229195	ENST00000550789		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-intron	ENST00000418359	ENST00000359019		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-intron	ENST00000418359	ENST00000334822		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-intron	ENST00000418359	ENST00000426126		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
5CDS-3UTR	ENST00000418359	ENST00000550789		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-intron	ENST00000548230	ENST00000359019		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-intron	ENST00000548230	ENST00000334822		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-intron	ENST00000548230	ENST00000426126		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-3UTR	ENST00000548230	ENST00000550789		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-intron	ENST00000551483	ENST00000359019		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-intron	ENST00000551483	ENST00000334822		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-intron	ENST00000551483	ENST00000426126		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
intron-3UTR	ENST00000551483	ENST00000550789		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CNOT2	chr12	70672054	+	ZDHHC17	chr12	77239489	+
In-frame	ENST00000398073	ENST00000403681		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
Frame-shit	ENST00000398073	ENST00000541363		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
In-frame	ENST00000398073	ENST00000393577		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000398073	ENST00000393578		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000398073	ENST00000425208		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000398073	ENST00000536545		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000398073	ENST00000354636		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
In-frame	ENST00000548823	ENST00000403681		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
Frame-shit	ENST00000548823	ENST00000541363		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
In-frame	ENST00000548823	ENST00000393577		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548823	ENST00000393578		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548823	ENST00000425208		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548823	ENST00000536545		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548823	ENST00000354636		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-3CDS	ENST00000547701	ENST00000403681		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-3CDS	ENST00000547701	ENST00000541363		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-3CDS	ENST00000547701	ENST00000393577		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-intron	ENST00000547701	ENST00000393578		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-intron	ENST00000547701	ENST00000425208		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-intron	ENST00000547701	ENST00000536545		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
intron-intron	ENST00000547701	ENST00000354636		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	CTDSP2	chr12	58240155	-	HMGA2	chr12	66345163	+
5CDS-5UTR	ENST00000462284	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000356290	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000540827	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000258149	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000428863	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000393412	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000258148	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000544561	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000393410	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000393413	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000517852	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000545204	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000350057	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000360430	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
5CDS-5UTR	ENST00000299252	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000348801	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000478070	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-5UTR	ENST00000544125	ENST00000321110		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	MDM2	chr12	69230529	+	ZCCHC5	chrX	77914145	-
intron-3CDS	ENST00000381196	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000381196	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000360074	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000360074	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000537002	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000537002	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000397617	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000397617	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000358503	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000358503	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000397611	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000397611	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000355233	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000355233	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000356435	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000356435	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000540109	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000540109	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000486161	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000486161	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000397606	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000397606	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000463477	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000463477	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-3CDS	ENST00000471274	ENST00000261180		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-intron	ENST00000471274	ENST00000549138		TCGA	LD	SARC	TCGA-IF-A3RQ-01A	PTPRD	chr9	8857638	-	TRHDE	chr12	72893278	+
intron-5UTR	ENST00000385231	ENST00000485761		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385231	ENST00000367036		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385231	ENST00000310833		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385231	ENST00000356522		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385231	ENST00000537704		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385055	ENST00000485761		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385055	ENST00000367036		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385055	ENST00000310833		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385055	ENST00000356522		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
intron-5UTR	ENST00000385055	ENST00000537704		TCGA	LD	SARC	TCGA-IF-A4AK-01A	C1orf132	chr1	207979350	-	CD34	chr1	208062966	-
In-frame	ENST00000375431	ENST00000330205		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
In-frame	ENST00000375431	ENST00000291672		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
Frame-shit	ENST00000326039	ENST00000330205		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
Frame-shit	ENST00000326039	ENST00000291672		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
In-frame	ENST00000375430	ENST00000330205		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
In-frame	ENST00000375430	ENST00000291672		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
intron-3CDS	ENST00000476439	ENST00000330205		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
intron-3CDS	ENST00000476439	ENST00000291672		TCGA	LD	SARC	TCGA-IF-A4AK-01A	GRTP1	chr13	114009638	-	SPATC1L	chr21	47581981	-
intron-3CDS	ENST00000589123	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000589123	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000589123	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000346156	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000346156	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000346156	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000395111	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000395111	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000395111	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000586919	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000586919	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000586919	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000341919	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000341919	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000341919	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000590282	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000590282	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000590282	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000443272	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000443272	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
In-frame	ENST00000443272	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000588839	ENST00000262966		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000588839	ENST00000359935		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
intron-3CDS	ENST00000588839	ENST00000599840		TCGA	LD	SARC	TCGA-IF-A4AK-01A	NFIC	chr19	3366664	+	MPND	chr19	4357250	+
5CDS-5UTR	ENST00000257181	ENST00000378442		TCGA	LD	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14867619	-
5CDS-intron	ENST00000257181	ENST00000378441		TCGA	LD	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14867619	-
intron-5UTR	ENST00000474048	ENST00000378442		TCGA	LD	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14867619	-
intron-intron	ENST00000474048	ENST00000378441		TCGA	LD	SARC	TCGA-IF-A4AK-01A	PRPF38A	chr1	52876872	+	CDNF	chr10	14867619	-
5UTR-3CDS	ENST00000477593	ENST00000264982		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
5UTR-3CDS	ENST00000477593	ENST00000542237		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
5UTR-3CDS	ENST00000477593	ENST00000489254		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
5UTR-3CDS	ENST00000477593	ENST00000484888		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
5UTR-3CDS	ENST00000477593	ENST00000481834		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
5UTR-5UTR	ENST00000477593	ENST00000478673		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
5UTR-intron	ENST00000477593	ENST00000464035		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000544716	ENST00000264982		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000544716	ENST00000542237		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000544716	ENST00000489254		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000544716	ENST00000484888		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000544716	ENST00000481834		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-5UTR	ENST00000544716	ENST00000478673		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-intron	ENST00000544716	ENST00000464035		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000289153	ENST00000264982		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000289153	ENST00000542237		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000289153	ENST00000489254		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000289153	ENST00000484888		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000289153	ENST00000481834		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-5UTR	ENST00000289153	ENST00000478673		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-intron	ENST00000289153	ENST00000464035		TCGA	LD	SARC	TCGA-IS-A3K6-01A	PIK3CB	chr3	138553537	-	CEP70	chr3	138251412	-
intron-3CDS	ENST00000368533	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000368533	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000368533	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000368533	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000469717	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000469717	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000469717	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000469717	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000330188	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000330188	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000330188	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000330188	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000341485	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000341485	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000341485	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000341485	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000341372	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000341372	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000341372	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000341372	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
Frame-shit	ENST00000328159	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
Frame-shit	ENST00000328159	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
5CDS-5UTR	ENST00000328159	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
5CDS-intron	ENST00000328159	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000271850	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000271850	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000271850	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000271850	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000302206	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000302206	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000302206	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000302206	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000368531	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000368531	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000368531	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000368531	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000323144	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-3CDS	ENST00000323144	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-5UTR	ENST00000323144	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
intron-intron	ENST00000323144	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
Frame-shit	ENST00000368530	ENST00000271915		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
Frame-shit	ENST00000368530	ENST00000361147		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
5CDS-5UTR	ENST00000368530	ENST00000358505		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
5CDS-intron	ENST00000368530	ENST00000515643		TCGA	LD	SARC	TCGA-IS-A3K6-01A	TPM3	chr1	154141781	-	KCNN3	chr1	154794660	-
5CDS-intron	ENST00000317506	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000317506	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000317506	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000448631	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000448631	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000448631	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5UTR-intron	ENST00000536251	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5UTR-intron	ENST00000536251	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5UTR-intron	ENST00000536251	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000411657	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000411657	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000411657	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000602677	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000602677	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000602677	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
intron-intron	ENST00000425512	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
intron-intron	ENST00000425512	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
intron-intron	ENST00000425512	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5UTR-intron	ENST00000602887	ENST00000219473		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5UTR-intron	ENST00000602887	ENST00000570191		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5UTR-intron	ENST00000602887	ENST00000562743		TCGA	LD	SARC	TCGA-IS-A3K7-01A	RANBP10	chr16	67805937	-	USP10	chr16	84749801	+
5CDS-intron	ENST00000342992	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000342992	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000342992	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000342992	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000342992	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000460472	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000460472	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000460472	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000460472	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000460472	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000589042	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000589042	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000589042	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000589042	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000589042	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000342175	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000342175	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000342175	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000342175	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000342175	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000359218	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000359218	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000359218	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000359218	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000359218	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000591111	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000591111	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000591111	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000591111	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000591111	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000360870	ENST00000348749		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000360870	ENST00000261007		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000360870	ENST00000409219		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000360870	ENST00000409542		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
intron-intron	ENST00000360870	ENST00000409323		TCGA	LD	SARC	TCGA-IS-A3K7-01A	TTN	chr2	179594015	-	CHRNA1	chr2	175649597	-
5CDS-intron	ENST00000373451	ENST00000287152		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000394362		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000373213		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000373216		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000229913		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000373215		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000538893		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-intron	ENST00000373451	ENST00000541946		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5CDS-5UTR	ENST00000373451	ENST00000465719		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000287152		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000394362		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000373213		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000373216		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000229913		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000373215		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000538893		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-intron	ENST00000493656	ENST00000541946		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
intron-5UTR	ENST00000493656	ENST00000465719		TCGA	LD	SARC	TCGA-IS-A3KA-01A	CMTR1	chr6	37421088	+	KIF6	chr6	39659638	-
5UTR-3CDS	ENST00000348520	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000380038	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000389744	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000557575	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000553286	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000347839	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000555836	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000334553	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000246489	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000557450	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000554280	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000452929	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000445352	ENST00000409074		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000556253		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000247618		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000477116		TCGA	LD	SARC	TCGA-IS-A3KA-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
3UTR-3CDS	ENST00000410075	ENST00000360876		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
3UTR-3CDS	ENST00000410075	ENST00000397011		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000377802	ENST00000360876		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000377802	ENST00000397011		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000355812	ENST00000360876		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000355812	ENST00000397011		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000409544	ENST00000360876		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000409544	ENST00000397011		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000264447	ENST00000360876		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000264447	ENST00000397011		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000409407	ENST00000360876		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000409407	ENST00000397011		TCGA	LD	SARC	TCGA-IS-A3KA-01A	ZNF638	chr2	71615853	+	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000312177	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000312177	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000312177	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-intron	ENST00000312177	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000519354	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000519354	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000519354	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
intron-intron	ENST00000519354	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	CDRT4	chr17	15406412	-	USP20	chr9	132620329	+
Frame-shit	ENST00000421834	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000421834	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000421834	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000421834	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370769	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370769	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370769	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000370769	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
3UTR-3CDS	ENST00000312431	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
3UTR-3CDS	ENST00000312431	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
3UTR-3CDS	ENST00000312431	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
3UTR-3UTR	ENST00000312431	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370754	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370754	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370754	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000370754	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370788	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370788	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000370788	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000370788	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000361203	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000361203	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000361203	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000361203	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000244364	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000244364	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000244364	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000244364	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000446842	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000446842	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000446842	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
5CDS-3UTR	ENST00000446842	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000340834	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000340834	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000340834	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3UTR	ENST00000340834	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000370765	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000370765	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000370765	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3UTR	ENST00000370765	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000518935	ENST00000379052		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000518935	ENST00000425446		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3CDS	ENST00000518935	ENST00000318204		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
intron-3UTR	ENST00000518935	ENST00000508508		TCGA	LD	SARC	TCGA-IW-A3M4-01A	DST	chr6	56354288	-	RBM24	chr6	17291987	+
Frame-shit	ENST00000519970	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
Frame-shit	ENST00000519970	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
Frame-shit	ENST00000519970	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-intron	ENST00000519970	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000225576	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000225576	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000225576	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-intron	ENST00000225576	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000584811	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000584811	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000584811	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-intron	ENST00000584811	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000438826	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000438826	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000438826	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-intron	ENST00000438826	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000428082	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000428082	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000428082	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-intron	ENST00000428082	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000518321	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000518321	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
In-frame	ENST00000518321	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-intron	ENST00000518321	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000583206	ENST00000372429		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000583206	ENST00000315480		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
intron-3CDS	ENST00000583206	ENST00000358355		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
intron-intron	ENST00000583206	ENST00000472108		TCGA	LD	SARC	TCGA-IW-A3M4-01A	TVP23C	chr17	15449099	-	USP20	chr9	132620329	+
5CDS-5UTR	ENST00000372429	ENST00000312177		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
5CDS-intron	ENST00000372429	ENST00000519354		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
5CDS-5UTR	ENST00000315480	ENST00000312177		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
5CDS-intron	ENST00000315480	ENST00000519354		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
5CDS-5UTR	ENST00000358355	ENST00000312177		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
5CDS-intron	ENST00000358355	ENST00000519354		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
intron-5UTR	ENST00000472108	ENST00000312177		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
intron-intron	ENST00000472108	ENST00000519354		TCGA	LD	SARC	TCGA-IW-A3M4-01A	USP20	chr9	132620391	+	CDRT4	chr17	15343599	-
5UTR-intron	ENST00000266529	ENST00000327791		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000266529	ENST00000442791		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000266529	ENST00000534854		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000266529	ENST00000380790		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000266529	ENST00000380788		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000266529	ENST00000541702		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000266529	ENST00000555248		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000327791		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000442791		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000534854		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000380790		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000380788		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000541702		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000552673	ENST00000555248		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000327791		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000442791		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000534854		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000380790		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000380788		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000541702		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
5UTR-intron	ENST00000551102	ENST00000555248		TCGA	LD	SARC	TCGA-IW-A3M4-01A	ZCRB1	chr12	42719726	-	YAF2	chr12	42604421	-
intron-3CDS	ENST00000335968	ENST00000355029		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
intron-5UTR	ENST00000335968	ENST00000542715		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
intron-5UTR	ENST00000335968	ENST00000380359		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
intron-intron	ENST00000335968	ENST00000484741		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
5UTR-3CDS	ENST00000559492	ENST00000355029		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
5UTR-5UTR	ENST00000559492	ENST00000542715		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
5UTR-5UTR	ENST00000559492	ENST00000380359		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
5UTR-intron	ENST00000559492	ENST00000484741		TCGA	LD	SARC	TCGA-IW-A3M6-01A	TARSL2	chr15	102204373	-	NET1	chr10	5493793	+
In-frame	ENST00000336273	ENST00000276681		TCGA	LD	SARC	TCGA-JV-A5VE-01A	MTDH	chr8	98673401	+	MAL2	chr8	120233827	+
5CDS-3UTR	ENST00000336273	ENST00000521748		TCGA	LD	SARC	TCGA-JV-A5VE-01A	MTDH	chr8	98673401	+	MAL2	chr8	120233827	+
In-frame	ENST00000519934	ENST00000276681		TCGA	LD	SARC	TCGA-JV-A5VE-01A	MTDH	chr8	98673401	+	MAL2	chr8	120233827	+
5CDS-3UTR	ENST00000519934	ENST00000521748		TCGA	LD	SARC	TCGA-JV-A5VE-01A	MTDH	chr8	98673401	+	MAL2	chr8	120233827	+
intron-3CDS	ENST00000487394	ENST00000012443		TCGA	LD	SARC	TCGA-JV-A5VF-01A	BCL3	chr19	45254637	+	PPP5C	chr19	46878861	+
intron-3CDS	ENST00000487394	ENST00000391919		TCGA	LD	SARC	TCGA-JV-A5VF-01A	BCL3	chr19	45254637	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000164227	ENST00000012443		TCGA	LD	SARC	TCGA-JV-A5VF-01A	BCL3	chr19	45254637	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000164227	ENST00000391919		TCGA	LD	SARC	TCGA-JV-A5VF-01A	BCL3	chr19	45254637	+	PPP5C	chr19	46878861	+
Frame-shit	ENST00000513610	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
5CDS-intron	ENST00000513610	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
intron-3CDS	ENST00000507288	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
intron-intron	ENST00000507288	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
In-frame	ENST00000274203	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
5CDS-intron	ENST00000274203	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
In-frame	ENST00000515803	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
5CDS-intron	ENST00000515803	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
Frame-shit	ENST00000427430	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
5CDS-intron	ENST00000427430	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
Frame-shit	ENST00000505695	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
5CDS-intron	ENST00000505695	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
intron-3CDS	ENST00000512061	ENST00000267163		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
intron-intron	ENST00000512061	ENST00000484879		TCGA	LD	SARC	TCGA-JV-A5VF-01A	MYO10	chr5	16689933	-	RB1	chr13	48934153	+
Frame-shit	ENST00000265990	ENST00000370647		TCGA	LD	SARC	TCGA-JV-A75J-01A	BTAF1	chr10	93713630	+	HOGA1	chr10	99361614	+
Frame-shit	ENST00000265990	ENST00000370646		TCGA	LD	SARC	TCGA-JV-A75J-01A	BTAF1	chr10	93713630	+	HOGA1	chr10	99361614	+
intron-3CDS	ENST00000471217	ENST00000370647		TCGA	LD	SARC	TCGA-JV-A75J-01A	BTAF1	chr10	93713630	+	HOGA1	chr10	99361614	+
intron-3CDS	ENST00000471217	ENST00000370646		TCGA	LD	SARC	TCGA-JV-A75J-01A	BTAF1	chr10	93713630	+	HOGA1	chr10	99361614	+
intron-3CDS	ENST00000544642	ENST00000370647		TCGA	LD	SARC	TCGA-JV-A75J-01A	BTAF1	chr10	93713630	+	HOGA1	chr10	99361614	+
intron-3CDS	ENST00000544642	ENST00000370646		TCGA	LD	SARC	TCGA-JV-A75J-01A	BTAF1	chr10	93713630	+	HOGA1	chr10	99361614	+
Frame-shit	ENST00000340250	ENST00000369449		TCGA	LD	SARC	TCGA-JV-A75J-01A	FSCN1	chr7	5633399	+	CLIC2	chrX	154528458	-
5CDS-5UTR	ENST00000340250	ENST00000465553		TCGA	LD	SARC	TCGA-JV-A75J-01A	FSCN1	chr7	5633399	+	CLIC2	chrX	154528458	-
Frame-shit	ENST00000382361	ENST00000369449		TCGA	LD	SARC	TCGA-JV-A75J-01A	FSCN1	chr7	5633399	+	CLIC2	chrX	154528458	-
5CDS-5UTR	ENST00000382361	ENST00000465553		TCGA	LD	SARC	TCGA-JV-A75J-01A	FSCN1	chr7	5633399	+	CLIC2	chrX	154528458	-
5CDS-intron	ENST00000222330	ENST00000587340		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000222330	ENST00000254165		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000222330	ENST00000587492		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000222330	ENST00000391713		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000222330	ENST00000592355		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-5UTR	ENST00000222330	ENST00000591078		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000398249	ENST00000587340		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000398249	ENST00000254165		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000398249	ENST00000587492		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000398249	ENST00000391713		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-intron	ENST00000398249	ENST00000592355		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5CDS-5UTR	ENST00000398249	ENST00000591078		TCGA	LD	SARC	TCGA-JV-A75J-01A	GSK3A	chr19	42744107	-	ZSCAN5A	chr19	56786277	-
5UTR-5UTR	ENST00000574590	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000574590	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000574590	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000574590	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
5UTR-5UTR	ENST00000574590	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000575318	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000575318	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000575318	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000575318	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000575318	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000572904	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000572904	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000572904	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000572904	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000572904	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000262419	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000262419	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000262419	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000262419	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000262419	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000432791	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000432791	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000432791	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000432791	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000432791	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000393476	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000393476	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000393476	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000393476	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000393476	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000576248	ENST00000431639		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000576248	ENST00000316024		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000576248	ENST00000457584		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000576248	ENST00000396463		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-5UTR	ENST00000576248	ENST00000534050		TCGA	LD	SARC	TCGA-JV-A75J-01A	KANSL1	chr17	44301037	-	WRAP53	chr17	7591966	+
intron-3CDS	ENST00000287437	ENST00000378204		TCGA	LD	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126168340	+	EXT1	chr8	118817132	-
intron-3CDS	ENST00000522563	ENST00000378204		TCGA	LD	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126168340	+	EXT1	chr8	118817132	-
intron-3CDS	ENST00000517315	ENST00000378204		TCGA	LD	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126168340	+	EXT1	chr8	118817132	-
intron-3CDS	ENST00000521460	ENST00000378204		TCGA	LD	SARC	TCGA-JV-A75J-01A	NSMCE2	chr8	126168340	+	EXT1	chr8	118817132	-
5CDS-intron	ENST00000262302	ENST00000315082		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5CDS-intron	ENST00000262302	ENST00000569943		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5UTR-intron	ENST00000565987	ENST00000315082		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5UTR-intron	ENST00000565987	ENST00000569943		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5UTR-intron	ENST00000543305	ENST00000315082		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5UTR-intron	ENST00000543305	ENST00000569943		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5CDS-intron	ENST00000565134	ENST00000315082		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
5CDS-intron	ENST00000565134	ENST00000569943		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
intron-intron	ENST00000568706	ENST00000315082		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
intron-intron	ENST00000568706	ENST00000569943		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
intron-intron	ENST00000568610	ENST00000315082		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
intron-intron	ENST00000568610	ENST00000569943		TCGA	LD	SARC	TCGA-JV-A75J-01A	NUBP2	chr16	1833037	+	RHOT2	chr16	722686	+
Frame-shit	ENST00000320476	ENST00000522917		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
Frame-shit	ENST00000320476	ENST00000399018		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
Frame-shit	ENST00000356994	ENST00000522917		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
Frame-shit	ENST00000356994	ENST00000399018		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
Frame-shit	ENST00000377533	ENST00000522917		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
Frame-shit	ENST00000377533	ENST00000399018		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
intron-3CDS	ENST00000546337	ENST00000522917		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
intron-3CDS	ENST00000546337	ENST00000399018		TCGA	LD	SARC	TCGA-JV-A75J-01A	SCRIB	chr8	144891721	-	FER1L6	chr8	125094529	+
In-frame	ENST00000246548	ENST00000598409		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
Frame-shit	ENST00000246548	ENST00000600547		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
In-frame	ENST00000439527	ENST00000598409		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
Frame-shit	ENST00000439527	ENST00000600547		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
In-frame	ENST00000592791	ENST00000598409		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
Frame-shit	ENST00000592791	ENST00000600547		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
intron-3CDS	ENST00000588585	ENST00000598409		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
intron-3CDS	ENST00000588585	ENST00000600547		TCGA	LD	SARC	TCGA-JV-A75J-01A	UBA2	chr19	34955036	+	SMIM17	chr19	57166471	+
Frame-shit	ENST00000404338	ENST00000413379		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000404338	ENST00000540850		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000404338	ENST00000598840		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000404338	ENST00000270225		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
5CDS-5UTR	ENST00000404338	ENST00000392776		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
intron-3CDS	ENST00000598548	ENST00000413379		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000598548	ENST00000540850		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000598548	ENST00000598840		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000598548	ENST00000270225		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
intron-5UTR	ENST00000598548	ENST00000392776		TCGA	LD	SARC	TCGA-K1-A3PN-01A	ARHGAP35	chr19	47440665	+	SAE1	chr19	47646751	+
5CDS-intron	ENST00000404338	ENST00000464527		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000404338	ENST00000445927		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000404338	ENST00000294947		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	C2orf61	chr2	47397903	-
intron-intron	ENST00000598548	ENST00000464527		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	C2orf61	chr2	47397903	-
intron-intron	ENST00000598548	ENST00000445927		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	C2orf61	chr2	47397903	-
intron-intron	ENST00000598548	ENST00000294947		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	C2orf61	chr2	47397903	-
Frame-shit	ENST00000404338	ENST00000272298		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	CALM2	chr2	47397903	-
5CDS-5UTR	ENST00000404338	ENST00000409563		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	CALM2	chr2	47397903	-
5CDS-5UTR	ENST00000404338	ENST00000484408		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	CALM2	chr2	47397903	-
intron-3CDS	ENST00000598548	ENST00000272298		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	CALM2	chr2	47397903	-
intron-5UTR	ENST00000598548	ENST00000409563		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	CALM2	chr2	47397903	-
intron-5UTR	ENST00000598548	ENST00000484408		TCGA	LD	SARC	TCGA-K1-A3PO-01A	ARHGAP35	chr19	47440665	+	CALM2	chr2	47397903	-
intron-3CDS	ENST00000372486	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000372486	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000372486	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-5UTR	ENST00000372486	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000372483	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000372483	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000372483	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-5UTR	ENST00000372483	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000459968	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000459968	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000459968	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-5UTR	ENST00000459968	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000482347	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000482347	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000482347	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-5UTR	ENST00000482347	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000372481	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000372481	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-3CDS	ENST00000372481	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
5UTR-5UTR	ENST00000372481	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000372480	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000372480	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000372480	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-5UTR	ENST00000372480	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000486391	ENST00000599916		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000486391	ENST00000601773		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000486391	ENST00000397126		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-5UTR	ENST00000486391	ENST00000597040		TCGA	LD	SARC	TCGA-K1-A42W-01A	NTMT1	chr9	132388574	+	ZNF208	chr19	22171711	-
intron-3CDS	ENST00000374531	ENST00000328619		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
intron-3UTR	ENST00000374531	ENST00000468717		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
Frame-shit	ENST00000448454	ENST00000328619		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000448454	ENST00000468717		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
intron-3CDS	ENST00000483909	ENST00000328619		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
intron-3UTR	ENST00000483909	ENST00000468717		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
Frame-shit	ENST00000314527	ENST00000328619		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
5CDS-3UTR	ENST00000314527	ENST00000468717		TCGA	LD	SARC	TCGA-K1-A42X-01A	PALM2	chr9	112694308	+	PCP4	chr21	41270401	+
Frame-shit	ENST00000329399	ENST00000260766		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
Frame-shit	ENST00000329399	ENST00000371380		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
Frame-shit	ENST00000329399	ENST00000371385		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
Frame-shit	ENST00000329399	ENST00000371375		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5CDS-intron	ENST00000329399	ENST00000464214		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5UTR-3CDS	ENST00000477757	ENST00000260766		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5UTR-3CDS	ENST00000477757	ENST00000371380		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5UTR-3CDS	ENST00000477757	ENST00000371385		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5UTR-3CDS	ENST00000477757	ENST00000371375		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5UTR-intron	ENST00000477757	ENST00000464214		TCGA	LD	SARC	TCGA-K1-A42X-01A	PDLIM1	chr10	97023621	-	PLCE1	chr10	95987063	+
5CDS-5UTR	ENST00000215832	ENST00000339468		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000215832	ENST00000403503		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000398822	ENST00000339468		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000398822	ENST00000403503		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000544786	ENST00000339468		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
5CDS-5UTR	ENST00000544786	ENST00000403503		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
intron-5UTR	ENST00000491588	ENST00000339468		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
intron-5UTR	ENST00000491588	ENST00000403503		TCGA	LD	SARC	TCGA-K1-A6RT-01A	MAPK1	chr22	22221612	-	YPEL1	chr22	22065197	-
5UTR-5UTR	ENST00000393799	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
3UTR-5UTR	ENST00000530427	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000393800	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000534534	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000524845	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000265637	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000524904	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000393801	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000265636	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
5UTR-5UTR	ENST00000529710	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
intron-5UTR	ENST00000527403	ENST00000285393		TCGA	LD	SARC	TCGA-K1-A6RT-01A	PPP6R3	chr11	68228295	+	ATP6V0D2	chr8	87111133	+
Frame-shit	ENST00000369130	ENST00000290541		TCGA	LD	SARC	TCGA-K1-A6RT-01A	VPS45	chr1	150044293	+	PSMB4	chr1	151374293	+
Frame-shit	ENST00000369128	ENST00000290541		TCGA	LD	SARC	TCGA-K1-A6RT-01A	VPS45	chr1	150044293	+	PSMB4	chr1	151374293	+
Frame-shit	ENST00000535106	ENST00000290541		TCGA	LD	SARC	TCGA-K1-A6RT-01A	VPS45	chr1	150044293	+	PSMB4	chr1	151374293	+
intron-3CDS	ENST00000484306	ENST00000290541		TCGA	LD	SARC	TCGA-K1-A6RT-01A	VPS45	chr1	150044293	+	PSMB4	chr1	151374293	+
5CDS-5UTR	ENST00000392038	ENST00000598409		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000392038	ENST00000600547		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000424901	ENST00000598409		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000424901	ENST00000600547		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000311278	ENST00000598409		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5CDS-5UTR	ENST00000311278	ENST00000600547		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5UTR-5UTR	ENST00000579047	ENST00000598409		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
5UTR-5UTR	ENST00000579047	ENST00000600547		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000581582	ENST00000598409		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
intron-5UTR	ENST00000581582	ENST00000600547		TCGA	LD	SARC	TCGA-K1-A6RU-01A	AKT2	chr19	40762833	-	SMIM17	chr19	57156936	+
In-frame	ENST00000261401	ENST00000550418		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000261401	ENST00000553186		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000261401	ENST00000547372		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000261401	ENST00000422070		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000261401	ENST00000535565		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000547427		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000552089		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000547338		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000436368		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000311745		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000355637		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000261401	ENST00000340209		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000541050	ENST00000550418		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000541050	ENST00000553186		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000541050	ENST00000547372		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000541050	ENST00000422070		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
Frame-shit	ENST00000541050	ENST00000535565		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000547427		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000552089		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000547338		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000436368		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000311745		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000355637		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000541050	ENST00000340209		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000549384	ENST00000550418		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000549384	ENST00000553186		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000549384	ENST00000547372		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000549384	ENST00000422070		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000549384	ENST00000535565		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000547427		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000552089		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000547338		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000436368		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000311745		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000355637		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000549384	ENST00000340209		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000421578	ENST00000550418		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000421578	ENST00000553186		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000421578	ENST00000547372		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000421578	ENST00000422070		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-3CDS	ENST00000421578	ENST00000535565		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000547427		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000552089		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000547338		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000436368		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000311745		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000355637		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
intron-intron	ENST00000421578	ENST00000340209		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000420959	ENST00000550418		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000420959	ENST00000553186		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000420959	ENST00000547372		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000420959	ENST00000422070		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000420959	ENST00000535565		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000547427		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000552089		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000547338		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000436368		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000311745		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000355637		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000420959	ENST00000340209		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000549772	ENST00000550418		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000549772	ENST00000553186		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000549772	ENST00000547372		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000549772	ENST00000422070		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
In-frame	ENST00000549772	ENST00000535565		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000547427		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000552089		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000547338		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000436368		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000311745		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000355637		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000549772	ENST00000340209		TCGA	LD	SARC	TCGA-K1-A6RU-01A	CORO1C	chr12	109094900	-	RBFOX1	chr16	7568149	+
5CDS-intron	ENST00000291634	ENST00000536402		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000291634	ENST00000281092		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000291634	ENST00000502752		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000291634	ENST00000438717		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000397826	ENST00000536402		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000397826	ENST00000281092		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000397826	ENST00000502752		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000397826	ENST00000438717		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
3UTR-intron	ENST00000479127	ENST00000536402		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
3UTR-intron	ENST00000479127	ENST00000281092		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
3UTR-intron	ENST00000479127	ENST00000502752		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
3UTR-intron	ENST00000479127	ENST00000438717		TCGA	LD	SARC	TCGA-K1-A6RU-01A	FAM207A	chr21	46380083	+	FER	chr5	108436097	+
5CDS-intron	ENST00000424459	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000424459	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000424459	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000424459	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000514387	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000514387	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000514387	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000514387	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000506184	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000506184	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000506184	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000506184	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000454432	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000454432	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000454432	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000454432	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000511209	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000511209	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000511209	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000511209	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000264779	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000264779	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000264779	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000264779	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000538707	ENST00000158771		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000538707	ENST00000572834		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000538707	ENST00000570848		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-intron	ENST00000538707	ENST00000571968		TCGA	LD	SARC	TCGA-K1-A6RU-01A	GPBP1	chr5	56557109	+	DERL2	chr17	5381319	-
5CDS-5UTR	ENST00000372577	ENST00000265381		TCGA	LD	SARC	TCGA-K1-A6RU-01A	NUP188	chr9	131715125	+	APBA1	chr9	72132195	-
5CDS-intron	ENST00000372577	ENST00000470082		TCGA	LD	SARC	TCGA-K1-A6RU-01A	NUP188	chr9	131715125	+	APBA1	chr9	72132195	-
3UTR-5UTR	ENST00000550219	ENST00000265381		TCGA	LD	SARC	TCGA-K1-A6RU-01A	NUP188	chr9	131715125	+	APBA1	chr9	72132195	-
3UTR-intron	ENST00000550219	ENST00000470082		TCGA	LD	SARC	TCGA-K1-A6RU-01A	NUP188	chr9	131715125	+	APBA1	chr9	72132195	-
Frame-shit	ENST00000552276	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552276	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552276	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552276	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552276	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552276	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552276	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000435558	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000551178	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000547178	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000225328	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000345901	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
Frame-shit	ENST00000552050	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000399759		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000571088		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000174621		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000399756		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000425167		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000576351		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
intron-3CDS	ENST00000550772	ENST00000310522		TCGA	LD	SARC	TCGA-K1-A6RU-01A	P2RX5	chr17	3582884	-	TRPV1	chr17	3475543	-
5UTR-3CDS	ENST00000358161	ENST00000372648		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000358161	ENST00000539497		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000358161	ENST00000466056		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000358161	ENST00000223865		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3CDS	ENST00000372739	ENST00000372648		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000372739	ENST00000539497		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000372739	ENST00000466056		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000372739	ENST00000223865		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3CDS	ENST00000372731	ENST00000372648		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-5UTR	ENST00000372731	ENST00000539497		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000372731	ENST00000466056		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
5UTR-3UTR	ENST00000372731	ENST00000223865		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
intron-3CDS	ENST00000475367	ENST00000372648		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
intron-5UTR	ENST00000475367	ENST00000539497		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
intron-3UTR	ENST00000475367	ENST00000466056		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
intron-3UTR	ENST00000475367	ENST00000223865		TCGA	LD	SARC	TCGA-K1-A6RU-01A	SPTAN1	chr9	131314975	+	TBC1D13	chr9	131550613	+
intron-3CDS	ENST00000413465	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
intron-3CDS	ENST00000413465	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
intron-3CDS	ENST00000359597	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
intron-3CDS	ENST00000359597	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000269305	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000269305	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000455263	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000455263	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000420246	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000420246	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000445888	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5UTR-3CDS	ENST00000445888	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
intron-3CDS	ENST00000574684	ENST00000262809		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
intron-3CDS	ENST00000574684	ENST00000596124		TCGA	LD	SARC	TCGA-K1-A6RU-01A	TP53	chr17	7590695	-	ELL	chr19	18561785	-
5CDS-intron	ENST00000372921	ENST00000453189		TCGA	LD	SARC	TCGA-K1-A6RV-01A	ANXA7	chr10	75147447	-	DNAJC9	chr10	74943334	-
5CDS-intron	ENST00000372921	ENST00000372950		TCGA	LD	SARC	TCGA-K1-A6RV-01A	ANXA7	chr10	75147447	-	DNAJC9	chr10	74943334	-
5CDS-intron	ENST00000535178	ENST00000453189		TCGA	LD	SARC	TCGA-K1-A6RV-01A	ANXA7	chr10	75147447	-	DNAJC9	chr10	74943334	-
5CDS-intron	ENST00000535178	ENST00000372950		TCGA	LD	SARC	TCGA-K1-A6RV-01A	ANXA7	chr10	75147447	-	DNAJC9	chr10	74943334	-
5UTR-intron	ENST00000492380	ENST00000453189		TCGA	LD	SARC	TCGA-K1-A6RV-01A	ANXA7	chr10	75147447	-	DNAJC9	chr10	74943334	-
5UTR-intron	ENST00000492380	ENST00000372950		TCGA	LD	SARC	TCGA-K1-A6RV-01A	ANXA7	chr10	75147447	-	DNAJC9	chr10	74943334	-
5CDS-5UTR	ENST00000280886	ENST00000392857		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-5UTR	ENST00000280886	ENST00000392858		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-5UTR	ENST00000280886	ENST00000535373		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-intron	ENST00000280886	ENST00000536575		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-intron	ENST00000280886	ENST00000540442		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-5UTR	ENST00000280886	ENST00000264169		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-5UTR	ENST00000280886	ENST00000542387		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5CDS-intron	ENST00000280886	ENST00000488761		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000381496	ENST00000392857		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000381496	ENST00000392858		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000381496	ENST00000535373		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-intron	ENST00000381496	ENST00000536575		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-intron	ENST00000381496	ENST00000540442		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000381496	ENST00000264169		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000381496	ENST00000542387		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-intron	ENST00000381496	ENST00000488761		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000540204	ENST00000392857		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000540204	ENST00000392858		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000540204	ENST00000535373		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-intron	ENST00000540204	ENST00000536575		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-intron	ENST00000540204	ENST00000540442		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000540204	ENST00000264169		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-5UTR	ENST00000540204	ENST00000542387		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
intron-intron	ENST00000540204	ENST00000488761		TCGA	LD	SARC	TCGA-K1-A6RV-01A	DIP2C	chr10	735434	-	ORC4	chr2	148733544	-
5UTR-3CDS	ENST00000335681	ENST00000533608		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
5UTR-3CDS	ENST00000335681	ENST00000358681		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
5UTR-3CDS	ENST00000335681	ENST00000395673		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
5UTR-3CDS	ENST00000335681	ENST00000343631		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
5UTR-intron	ENST00000335681	ENST00000529186		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000542504	ENST00000533608		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000542504	ENST00000358681		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000542504	ENST00000395673		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000542504	ENST00000343631		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-intron	ENST00000542504	ENST00000529186		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000486017	ENST00000533608		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000486017	ENST00000358681		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000486017	ENST00000395673		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-3CDS	ENST00000486017	ENST00000343631		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
intron-intron	ENST00000486017	ENST00000529186		TCGA	LD	SARC	TCGA-K1-A6RV-01A	NPAS2	chr2	101436876	+	EXT2	chr11	44253903	+
In-frame	ENST00000499869	ENST00000264784		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000499869	ENST00000506583		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000499869	ENST00000309065		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5CDS-intron	ENST00000499869	ENST00000481042		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000382451	ENST00000264784		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000382451	ENST00000506583		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000382451	ENST00000309065		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5CDS-intron	ENST00000382451	ENST00000481042		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000382452	ENST00000264784		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000382452	ENST00000506583		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000382452	ENST00000309065		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5CDS-intron	ENST00000382452	ENST00000481042		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5UTR-3CDS	ENST00000515743	ENST00000264784		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5UTR-3CDS	ENST00000515743	ENST00000506583		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5UTR-3CDS	ENST00000515743	ENST00000309065		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5UTR-intron	ENST00000515743	ENST00000481042		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000502702	ENST00000264784		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000502702	ENST00000506583		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
In-frame	ENST00000502702	ENST00000309065		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
5CDS-intron	ENST00000502702	ENST00000481042		TCGA	LD	SARC	TCGA-K1-A6RV-01A	WDR1	chr4	10078928	-	SLC2A9	chr4	9836632	-
Frame-shit	ENST00000378004	ENST00000452611		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
Frame-shit	ENST00000378004	ENST00000382622		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
5CDS-3UTR	ENST00000378004	ENST00000261252		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
Frame-shit	ENST00000274498	ENST00000452611		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
Frame-shit	ENST00000274498	ENST00000382622		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
5CDS-3UTR	ENST00000274498	ENST00000261252		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
intron-3CDS	ENST00000486650	ENST00000452611		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
intron-3CDS	ENST00000486650	ENST00000382622		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
intron-3UTR	ENST00000486650	ENST00000261252		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGAP26	chr5	142150480	+	PRMT8	chr12	3659102	+
In-frame	ENST00000317133	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000317133	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000317133	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5CDS-intron	ENST00000317133	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000375741	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000375741	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000375741	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5CDS-intron	ENST00000375741	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375739	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375739	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375739	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-intron	ENST00000375739	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000370623	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000370623	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
In-frame	ENST00000370623	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5CDS-intron	ENST00000370623	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000544132	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000544132	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000544132	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-intron	ENST00000544132	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000218789	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000218789	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000218789	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-intron	ENST00000218789	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000375736	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000375736	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-3CDS	ENST00000375736	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5UTR-intron	ENST00000375736	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000426073	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000426073	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000426073	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-intron	ENST00000426073	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375737	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375737	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375737	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-intron	ENST00000375737	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375723	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375723	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000375723	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-intron	ENST00000375723	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000478679	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000478679	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000478679	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-intron	ENST00000478679	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000483189	ENST00000255674		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000483189	ENST00000454359		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-3CDS	ENST00000483189	ENST00000437017		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
intron-intron	ENST00000483189	ENST00000579986		TCGA	LD	SARC	TCGA-KD-A5QS-01A	ARHGEF7	chr13	111806338	+	RTTN	chr18	67817969	-
5CDS-intron	ENST00000305031	ENST00000540000		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CHSY3	chr5	129244053	+	RBM22	chr5	150078193	-
5CDS-intron	ENST00000305031	ENST00000199814		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CHSY3	chr5	129244053	+	RBM22	chr5	150078193	-
5CDS-intron	ENST00000305031	ENST00000447771		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CHSY3	chr5	129244053	+	RBM22	chr5	150078193	-
3UTR-intron	ENST00000507545	ENST00000540000		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CHSY3	chr5	129244053	+	RBM22	chr5	150078193	-
3UTR-intron	ENST00000507545	ENST00000199814		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CHSY3	chr5	129244053	+	RBM22	chr5	150078193	-
3UTR-intron	ENST00000507545	ENST00000447771		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CHSY3	chr5	129244053	+	RBM22	chr5	150078193	-
5CDS-intron	ENST00000367306	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000367306	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000367306	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000367306	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000340006	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000340006	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000340006	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000531916	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000531916	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000531916	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000532460	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000532460	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000532460	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000533432	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000533432	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5CDS-intron	ENST00000533432	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-5UTR	ENST00000526723	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-5UTR	ENST00000526723	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-intron	ENST00000526723	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000434074		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-5UTR	ENST00000458271	ENST00000312040		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000451945		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000529655		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000530500		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000526508		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-5UTR	ENST00000458271	ENST00000524625		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000359513		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000528494		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
5UTR-intron	ENST00000458271	ENST00000526485		TCGA	LD	SARC	TCGA-KD-A5QS-01A	CSRP1	chr1	201465320	-	ATG13	chr11	46651595	+
intron-3CDS	ENST00000491671	ENST00000475243		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
intron-intron	ENST00000491671	ENST00000395802		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
intron-intron	ENST00000491671	ENST00000265619		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-3CDS	ENST00000216214	ENST00000475243		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-intron	ENST00000216214	ENST00000395802		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-intron	ENST00000216214	ENST00000265619		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-3CDS	ENST00000441876	ENST00000475243		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-intron	ENST00000441876	ENST00000395802		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-intron	ENST00000441876	ENST00000265619		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-3CDS	ENST00000405673	ENST00000475243		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-intron	ENST00000405673	ENST00000395802		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
5UTR-intron	ENST00000405673	ENST00000265619		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
intron-3CDS	ENST00000405548	ENST00000475243		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
intron-intron	ENST00000405548	ENST00000395802		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
intron-intron	ENST00000405548	ENST00000265619		TCGA	LD	SARC	TCGA-KD-A5QS-01A	FAM118A	chr22	45706064	+	VAPB	chr20	57009658	+
In-frame	ENST00000184956	ENST00000299341		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000376352		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000405898		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000434978		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000184956	ENST00000398391		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000299341		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000376352		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000405898		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000434978		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000585976	ENST00000398391		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000585712	ENST00000299341		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000585712	ENST00000376352		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000585712	ENST00000405898		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000585712	ENST00000434978		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
intron-3CDS	ENST00000585712	ENST00000398391		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HEATR6	chr17	58153491	-	STXBP4	chr17	53108529	+
In-frame	ENST00000405805	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
In-frame	ENST00000405805	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000405805	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000405805	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000405805	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000339872	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000339872	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000339872	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000339872	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000339872	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000341423	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000341423	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000341423	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000341423	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000341423	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000399489	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000399489	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000399489	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000399489	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000399489	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000399494	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000399494	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000399494	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000399494	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000399494	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000326004	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
Frame-shit	ENST00000326004	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000326004	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000326004	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-3UTR	ENST00000326004	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
intron-3CDS	ENST00000468384	ENST00000449823		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
intron-3CDS	ENST00000468384	ENST00000440264		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
intron-3UTR	ENST00000468384	ENST00000463403		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
intron-3UTR	ENST00000468384	ENST00000418263		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
intron-3UTR	ENST00000468384	ENST00000255465		TCGA	LD	SARC	TCGA-KD-A5QS-01A	HMGB1	chr13	31036675	-	CCNA1	chr13	37011766	+
5CDS-intron	ENST00000269886	ENST00000474034		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SH3GL1	chr19	4400321	-	ZIC1	chr3	147130305	+
5CDS-intron	ENST00000269886	ENST00000282928		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SH3GL1	chr19	4400321	-	ZIC1	chr3	147130305	+
5CDS-intron	ENST00000598564	ENST00000474034		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SH3GL1	chr19	4400321	-	ZIC1	chr3	147130305	+
5CDS-intron	ENST00000598564	ENST00000282928		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SH3GL1	chr19	4400321	-	ZIC1	chr3	147130305	+
5CDS-intron	ENST00000417295	ENST00000474034		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SH3GL1	chr19	4400321	-	ZIC1	chr3	147130305	+
5CDS-intron	ENST00000417295	ENST00000282928		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SH3GL1	chr19	4400321	-	ZIC1	chr3	147130305	+
5UTR-3CDS	ENST00000354772	ENST00000355349		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SLC22A17	chr14	23821855	-	MYH7	chr14	23889443	-
5UTR-3CDS	ENST00000397260	ENST00000355349		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SLC22A17	chr14	23821855	-	MYH7	chr14	23889443	-
5UTR-3CDS	ENST00000474057	ENST00000355349		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SLC22A17	chr14	23821855	-	MYH7	chr14	23889443	-
intron-3CDS	ENST00000206544	ENST00000355349		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SLC22A17	chr14	23821855	-	MYH7	chr14	23889443	-
5UTR-3CDS	ENST00000397267	ENST00000355349		TCGA	LD	SARC	TCGA-KD-A5QS-01A	SLC22A17	chr14	23821855	-	MYH7	chr14	23889443	-
Frame-shit	ENST00000304842	ENST00000343526		TCGA	LD	SARC	TCGA-KD-A5QS-01A	TPST1	chr7	65751696	+	TRIM24	chr7	138189035	+
Frame-shit	ENST00000304842	ENST00000415680		TCGA	LD	SARC	TCGA-KD-A5QS-01A	TPST1	chr7	65751696	+	TRIM24	chr7	138189035	+
5CDS-3UTR	ENST00000304842	ENST00000497516		TCGA	LD	SARC	TCGA-KD-A5QS-01A	TPST1	chr7	65751696	+	TRIM24	chr7	138189035	+
3UTR-3CDS	ENST00000480281	ENST00000343526		TCGA	LD	SARC	TCGA-KD-A5QS-01A	TPST1	chr7	65751696	+	TRIM24	chr7	138189035	+
3UTR-3CDS	ENST00000480281	ENST00000415680		TCGA	LD	SARC	TCGA-KD-A5QS-01A	TPST1	chr7	65751696	+	TRIM24	chr7	138189035	+
3UTR-3UTR	ENST00000480281	ENST00000497516		TCGA	LD	SARC	TCGA-KD-A5QS-01A	TPST1	chr7	65751696	+	TRIM24	chr7	138189035	+
In-frame	ENST00000379672	ENST00000399277		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-5UTR	ENST00000379672	ENST00000399280		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-intron	ENST00000379672	ENST00000486655		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-intron	ENST00000379672	ENST00000472495		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
In-frame	ENST00000340825	ENST00000399277		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-5UTR	ENST00000340825	ENST00000399280		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-intron	ENST00000340825	ENST00000486655		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-intron	ENST00000340825	ENST00000472495		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
In-frame	ENST00000262444	ENST00000399277		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-5UTR	ENST00000262444	ENST00000399280		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-intron	ENST00000262444	ENST00000486655		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5CDS-intron	ENST00000262444	ENST00000472495		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
intron-3CDS	ENST00000578087	ENST00000399277		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
intron-5UTR	ENST00000578087	ENST00000399280		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
intron-intron	ENST00000578087	ENST00000486655		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
intron-intron	ENST00000578087	ENST00000472495		TCGA	LD	SARC	TCGA-KD-A5QT-01A	ARHGAP44	chr17	12832363	+	ZSWIM7	chr17	15884458	-
5UTR-3CDS	ENST00000339468	ENST00000400324		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000339468	ENST00000400330		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000339468	ENST00000400319		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000339468	ENST00000400320		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000339468	ENST00000377908		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-intron	ENST00000339468	ENST00000267215		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-intron	ENST00000339468	ENST00000465066		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000403503	ENST00000400324		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000403503	ENST00000400330		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000403503	ENST00000400319		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000403503	ENST00000400320		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-3CDS	ENST00000403503	ENST00000377908		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-intron	ENST00000403503	ENST00000267215		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
5UTR-intron	ENST00000403503	ENST00000465066		TCGA	LD	SARC	TCGA-KD-A5QT-01A	YPEL1	chr22	22089904	-	DIAPH3	chr13	60240980	-
Frame-shit	ENST00000372009	ENST00000402363		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000372009	ENST00000537798		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000372009	ENST00000350030		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000372009	ENST00000372052		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000372009	ENST00000351223		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
5CDS-3UTR	ENST00000372009	ENST00000530073		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000361297	ENST00000402363		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000361297	ENST00000537798		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000361297	ENST00000350030		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000361297	ENST00000372052		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
Frame-shit	ENST00000361297	ENST00000351223		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
5CDS-3UTR	ENST00000361297	ENST00000530073		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
intron-3CDS	ENST00000477968	ENST00000402363		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
intron-3CDS	ENST00000477968	ENST00000537798		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
intron-3CDS	ENST00000477968	ENST00000350030		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
intron-3CDS	ENST00000477968	ENST00000372052		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
intron-3CDS	ENST00000477968	ENST00000351223		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
intron-3UTR	ENST00000477968	ENST00000530073		TCGA	LD	SARC	TCGA-KD-A5QU-01A	MAST2	chr1	46295253	+	NASP	chr1	46078841	+
In-frame	ENST00000340635	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000360047	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000507116	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
Frame-shit	ENST00000502484	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000546160	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000502575	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
intron-3CDS	ENST00000358923	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000503258	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000405755	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
intron-3CDS	ENST00000317118	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
5UTR-3CDS	ENST00000503947	ENST00000264230		TCGA	LD	SARC	TCGA-KD-A5QU-01A	PDE4D	chr5	58476421	-	NOA1	chr4	57840188	-
In-frame	ENST00000297338	ENST00000378300		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
In-frame	ENST00000297338	ENST00000378292		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
In-frame	ENST00000297338	ENST00000329305		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
In-frame	ENST00000297338	ENST00000360958		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000523986	ENST00000378300		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000523986	ENST00000378292		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000523986	ENST00000329305		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000523986	ENST00000360958		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000517749	ENST00000378300		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000517749	ENST00000378292		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000517749	ENST00000329305		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000517749	ENST00000360958		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000518055	ENST00000378300		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000518055	ENST00000378292		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000518055	ENST00000329305		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
Frame-shit	ENST00000518055	ENST00000360958		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000523547	ENST00000378300		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000523547	ENST00000378292		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000523547	ENST00000329305		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
intron-3CDS	ENST00000523547	ENST00000360958		TCGA	LD	SARC	TCGA-KD-A5QU-01A	RAD21	chr8	117862857	-	TPM2	chr9	35685548	-
5CDS-5UTR	ENST00000372902	ENST00000338252		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000508830		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000359176		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000395812		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000325674		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000395813		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000510756		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000372902	ENST00000508608		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000341926		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000511049		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000309190		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000509903		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000511782		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000504465		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000348386		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000508579		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5CDS-intron	ENST00000372902	ENST00000515663		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000338252		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000508830		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000359176		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000395812		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000325674		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000395813		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000510756		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-5UTR	ENST00000480575	ENST00000508608		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000341926		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000511049		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000309190		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000509903		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000511782		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000504465		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000348386		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000508579		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
5UTR-intron	ENST00000480575	ENST00000515663		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TIMM8A	chrX	100603521	-	CAST	chr5	96011243	+
intron-3CDS	ENST00000413465	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-3CDS	ENST00000413465	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-intron	ENST00000413465	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-3CDS	ENST00000359597	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-3CDS	ENST00000359597	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-intron	ENST00000359597	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000269305	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000269305	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-intron	ENST00000269305	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000455263	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000455263	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-intron	ENST00000455263	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000420246	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000420246	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-intron	ENST00000420246	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000445888	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-3CDS	ENST00000445888	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
5UTR-intron	ENST00000445888	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-3CDS	ENST00000574684	ENST00000320699		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-3CDS	ENST00000574684	ENST00000309061		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
intron-intron	ENST00000574684	ENST00000590681		TCGA	LD	SARC	TCGA-KD-A5QU-01A	TP53	chr17	7590695	-	DUS3L	chr19	5788409	-
In-frame	ENST00000375441	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000375441	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000375441	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
5CDS-intron	ENST00000375441	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000451881	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000451881	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000451881	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
5CDS-intron	ENST00000451881	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000326335	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000326335	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000326335	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
5CDS-intron	ENST00000326335	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000375440	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000375440	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000375440	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
5CDS-intron	ENST00000375440	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
intron-3CDS	ENST00000463426	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
intron-3CDS	ENST00000463426	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
intron-3CDS	ENST00000463426	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
intron-intron	ENST00000463426	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	CUL4A	chr13	113893865	+	F7	chr13	113771787	+
In-frame	ENST00000332556	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
In-frame	ENST00000332556	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
In-frame	ENST00000332556	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
5CDS-3UTR	ENST00000332556	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
In-frame	ENST00000397181	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
In-frame	ENST00000397181	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
In-frame	ENST00000397181	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
5CDS-3UTR	ENST00000397181	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
intron-3CDS	ENST00000471046	ENST00000541084		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
intron-3CDS	ENST00000471046	ENST00000346342		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
intron-3CDS	ENST00000471046	ENST00000375581		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
intron-3UTR	ENST00000471046	ENST00000473085		TCGA	LD	SARC	TCGA-KF-A41W-01A	LAMP1	chr13	113951810	+	F7	chr13	113768161	+
In-frame	ENST00000375608	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375608	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375608	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375608	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375608	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375608	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375608	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000442652	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000442652	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000442652	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000442652	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000442652	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000442652	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000442652	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375604	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375604	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375604	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375604	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375604	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375604	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375604	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000397030	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000397030	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000397030	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397030	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397030	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397030	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397030	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000535094	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000535094	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000535094	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000535094	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000535094	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000535094	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000535094	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000421756	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000421756	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000421756	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000421756	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000421756	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000421756	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000421756	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375601	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375601	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375601	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375601	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375601	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375601	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375601	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-3CDS	ENST00000397036	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-3CDS	ENST00000397036	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-3CDS	ENST00000397036	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397036	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397036	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397036	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397036	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000434480	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000434480	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000434480	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000434480	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000434480	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000434480	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000434480	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000423482	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000423482	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000423482	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000423482	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000423482	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000423482	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000423482	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375597	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375597	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000375597	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375597	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375597	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375597	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000375597	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-3CDS	ENST00000397024	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-3CDS	ENST00000397024	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-3CDS	ENST00000397024	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397024	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397024	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397024	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
intron-intron	ENST00000397024	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-3CDS	ENST00000480321	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-3CDS	ENST00000480321	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-3CDS	ENST00000480321	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-intron	ENST00000480321	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-intron	ENST00000480321	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-intron	ENST00000480321	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
3UTR-intron	ENST00000480321	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000397021	ENST00000337344		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000397021	ENST00000375477		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
In-frame	ENST00000397021	ENST00000375479		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397021	ENST00000493650		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397021	ENST00000375459		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397021	ENST00000246505		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
5CDS-intron	ENST00000397021	ENST00000375457		TCGA	LD	SARC	TCGA-KF-A41W-01A	MCF2L	chr13	113699675	+	PCID2	chr13	113854830	-
Frame-shit	ENST00000262039	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
Frame-shit	ENST00000262039	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
5CDS-intron	ENST00000262039	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
Frame-shit	ENST00000398870	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
Frame-shit	ENST00000398870	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
5CDS-intron	ENST00000398870	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
Frame-shit	ENST00000586545	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
Frame-shit	ENST00000586545	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
5CDS-intron	ENST00000586545	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
3UTR-3CDS	ENST00000590220	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
3UTR-3CDS	ENST00000590220	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
3UTR-intron	ENST00000590220	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000593098	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000593098	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-intron	ENST00000593098	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000589056	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000589056	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-intron	ENST00000589056	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000587402	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000587402	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-intron	ENST00000587402	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000588156	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000588156	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-intron	ENST00000588156	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000587328	ENST00000256413		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-3CDS	ENST00000587328	ENST00000382998		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
intron-intron	ENST00000587328	ENST00000592658		TCGA	LD	SARC	TCGA-KF-A41W-01A	PIK3C3	chr18	39535324	+	CTIF	chr18	46162985	+
In-frame	ENST00000342066	ENST00000342783		TCGA	LD	SARC	TCGA-KF-A41W-01A	SAMD11	chr1	861393	+	PROZ	chr13	113824727	+
In-frame	ENST00000342066	ENST00000375547		TCGA	LD	SARC	TCGA-KF-A41W-01A	SAMD11	chr1	861393	+	PROZ	chr13	113824727	+
5CDS-3UTR	ENST00000342066	ENST00000493630		TCGA	LD	SARC	TCGA-KF-A41W-01A	SAMD11	chr1	861393	+	PROZ	chr13	113824727	+
intron-3CDS	ENST00000478729	ENST00000342783		TCGA	LD	SARC	TCGA-KF-A41W-01A	SAMD11	chr1	861393	+	PROZ	chr13	113824727	+
intron-3CDS	ENST00000478729	ENST00000375547		TCGA	LD	SARC	TCGA-KF-A41W-01A	SAMD11	chr1	861393	+	PROZ	chr13	113824727	+
intron-3UTR	ENST00000478729	ENST00000493630		TCGA	LD	SARC	TCGA-KF-A41W-01A	SAMD11	chr1	861393	+	PROZ	chr13	113824727	+
5CDS-intron	ENST00000434316	ENST00000283558		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000434316	ENST00000375630		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000434316	ENST00000487903		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
5CDS-intron	ENST00000434316	ENST00000375645		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
5CDS-3UTR	ENST00000434316	ENST00000419448		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000375391	ENST00000283558		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000375391	ENST00000375630		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000375391	ENST00000487903		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000375391	ENST00000375645		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-3UTR	ENST00000375391	ENST00000419448		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000474393	ENST00000283558		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000474393	ENST00000375630		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000474393	ENST00000487903		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-intron	ENST00000474393	ENST00000375645		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-3UTR	ENST00000474393	ENST00000419448		TCGA	LD	SARC	TCGA-KF-A41W-01A	TMCO3	chr13	114193822	+	ATP11A	chr13	113371636	+
intron-3CDS	ENST00000322038	ENST00000336617		TCGA	LD	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923871	+	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000322038	ENST00000422660		TCGA	LD	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923871	+	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000322038	ENST00000495244		TCGA	LD	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923871	+	RNASEH2B	chr13	51501543	+
In-frame	ENST00000580243	ENST00000336617		TCGA	LD	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923871	+	RNASEH2B	chr13	51501543	+
In-frame	ENST00000580243	ENST00000422660		TCGA	LD	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923871	+	RNASEH2B	chr13	51501543	+
5CDS-intron	ENST00000580243	ENST00000495244		TCGA	LD	SARC	TCGA-KF-A41W-01A	TSHZ1	chr18	72923871	+	RNASEH2B	chr13	51501543	+
In-frame	ENST00000262291	ENST00000357654		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000262291	ENST00000351666		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000262291	ENST00000309486		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000262291	ENST00000346315		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000262291	ENST00000354071		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000262291	ENST00000352993		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000262291	ENST00000468300		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000262291	ENST00000591534		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000262291	ENST00000591849		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000262291	ENST00000586385		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000262291	ENST00000493795		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000262291	ENST00000471181		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000262291	ENST00000491747		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000357654		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000351666		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000309486		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000346315		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000354071		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000352993		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000537567	ENST00000468300		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000537567	ENST00000591534		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000537567	ENST00000591849		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000537567	ENST00000586385		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000537567	ENST00000493795		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000537567	ENST00000471181		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000537567	ENST00000491747		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000357654		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000351666		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000309486		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000346315		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000354071		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000352993		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000539763	ENST00000468300		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000539763	ENST00000591534		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000539763	ENST00000591849		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000539763	ENST00000586385		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000539763	ENST00000493795		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000539763	ENST00000471181		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000539763	ENST00000491747		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000357654		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000351666		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000309486		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000346315		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000354071		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000352993		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000536180	ENST00000468300		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000536180	ENST00000591534		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000536180	ENST00000591849		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000536180	ENST00000586385		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000536180	ENST00000493795		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000536180	ENST00000471181		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000536180	ENST00000491747		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000357654		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000351666		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000309486		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000346315		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000354071		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000352993		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000545362	ENST00000468300		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000545362	ENST00000591534		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000545362	ENST00000591849		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000545362	ENST00000586385		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000545362	ENST00000493795		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000545362	ENST00000471181		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
5CDS-intron	ENST00000545362	ENST00000491747		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000357654		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000351666		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000309486		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000346315		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000354071		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000352993		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-3CDS	ENST00000588617	ENST00000468300		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-intron	ENST00000588617	ENST00000591534		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-intron	ENST00000588617	ENST00000591849		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-intron	ENST00000588617	ENST00000586385		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-intron	ENST00000588617	ENST00000493795		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-intron	ENST00000588617	ENST00000471181		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
intron-intron	ENST00000588617	ENST00000491747		TCGA	LD	SARC	TCGA-KF-A41W-01A	VMP1	chr17	57851246	+	BRCA1	chr17	41234592	-
In-frame	ENST00000251582	ENST00000448248		TCGA	LD	SARC	TCGA-LI-A9QH-01A	ADAMTS2	chr5	178699912	-	C5orf60	chr5	179070491	-
5CDS-5UTR	ENST00000251582	ENST00000506142		TCGA	LD	SARC	TCGA-LI-A9QH-01A	ADAMTS2	chr5	178699912	-	C5orf60	chr5	179070491	-
In-frame	ENST00000274609	ENST00000448248		TCGA	LD	SARC	TCGA-LI-A9QH-01A	ADAMTS2	chr5	178699912	-	C5orf60	chr5	179070491	-
5CDS-5UTR	ENST00000274609	ENST00000506142		TCGA	LD	SARC	TCGA-LI-A9QH-01A	ADAMTS2	chr5	178699912	-	C5orf60	chr5	179070491	-
In-frame	ENST00000322536	ENST00000381129		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000250087		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000574506		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000575265		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000576776		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000570466		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000576307		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000322536	ENST00000571740		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
In-frame	ENST00000526794	ENST00000381129		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000250087		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000574506		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000575265		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000576776		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000570466		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000576307		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
5CDS-intron	ENST00000526794	ENST00000571740		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-3CDS	ENST00000534221	ENST00000381129		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000250087		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000574506		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000575265		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000576776		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000570466		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000576307		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
intron-intron	ENST00000534221	ENST00000571740		TCGA	LD	SARC	TCGA-LI-A9QH-01A	DDX10	chr11	108594189	+	AIPL1	chr17	6331826	-
In-frame	ENST00000316623	ENST00000360605		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
In-frame	ENST00000316623	ENST00000542441		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
5CDS-5UTR	ENST00000316623	ENST00000392271		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
5CDS-5UTR	ENST00000316623	ENST00000312051		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
5CDS-intron	ENST00000316623	ENST00000574176		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-3CDS	ENST00000561429	ENST00000360605		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-3CDS	ENST00000561429	ENST00000542441		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-5UTR	ENST00000561429	ENST00000392271		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-5UTR	ENST00000561429	ENST00000312051		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-intron	ENST00000561429	ENST00000574176		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-3CDS	ENST00000560355	ENST00000360605		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-3CDS	ENST00000560355	ENST00000542441		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-5UTR	ENST00000560355	ENST00000392271		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-5UTR	ENST00000560355	ENST00000312051		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
intron-intron	ENST00000560355	ENST00000574176		TCGA	LD	SARC	TCGA-LI-A9QH-01A	FBN1	chr15	48936803	-	URI1	chr19	30476130	+
5CDS-intron	ENST00000323468	ENST00000546088		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
5CDS-intron	ENST00000323468	ENST00000448108		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-intron	ENST00000434945	ENST00000546088		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-intron	ENST00000434945	ENST00000448108		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-intron	ENST00000532730	ENST00000546088		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-intron	ENST00000532730	ENST00000448108		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-intron	ENST00000375648	ENST00000546088		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-intron	ENST00000375648	ENST00000448108		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDELC2	chr11	108368892	-	TAF1D	chr11	93476064	-
intron-3CDS	ENST00000406396	ENST00000304116		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000406396	ENST00000392173		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000406396	ENST00000355114		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000589592	ENST00000304116		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000589592	ENST00000392173		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000589592	ENST00000355114		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000326575	ENST00000304116		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000326575	ENST00000392173		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
intron-3CDS	ENST00000326575	ENST00000355114		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KDSR	chr18	60998767	-	ZNF565	chr19	36686058	-
5CDS-3UTR	ENST00000377669	ENST00000393005		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KLF12	chr13	74518118	-	USP32P1	chr17	16695141	+
5CDS-3UTR	ENST00000377666	ENST00000393005		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KLF12	chr13	74518118	-	USP32P1	chr17	16695141	+
5UTR-3UTR	ENST00000472022	ENST00000393005		TCGA	LD	SARC	TCGA-LI-A9QH-01A	KLF12	chr13	74518118	-	USP32P1	chr17	16695141	+
5CDS-5UTR	ENST00000409792	ENST00000399036		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
5CDS-intron	ENST00000409792	ENST00000357392		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
5CDS-intron	ENST00000409792	ENST00000400880		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
5CDS-intron	ENST00000409792	ENST00000400882		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
5CDS-intron	ENST00000409792	ENST00000441909		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
intron-5UTR	ENST00000492397	ENST00000399036		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
intron-intron	ENST00000492397	ENST00000357392		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
intron-intron	ENST00000492397	ENST00000400880		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
intron-intron	ENST00000492397	ENST00000400882		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
intron-intron	ENST00000492397	ENST00000441909		TCGA	LD	SARC	TCGA-LI-A9QH-01A	SETD2	chr3	47139445	-	CCRL2	chr3	46448880	+
intron-3CDS	ENST00000378434	ENST00000336617		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000378434	ENST00000422660		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000378434	ENST00000495244		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000345941	ENST00000336617		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000345941	ENST00000422660		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000345941	ENST00000495244		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000465365	ENST00000336617		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-3CDS	ENST00000465365	ENST00000422660		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
intron-intron	ENST00000465365	ENST00000495244		TCGA	LD	SARC	TCGA-MB-A5YA-01A	LPAR6	chr13	48986557	-	RNASEH2B	chr13	51501543	+
5CDS-intron	ENST00000336617	ENST00000378434		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000336617	ENST00000345941		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000336617	ENST00000465365		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000422660	ENST00000378434		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000422660	ENST00000345941		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
5CDS-intron	ENST00000422660	ENST00000465365		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
intron-intron	ENST00000495244	ENST00000378434		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
intron-intron	ENST00000495244	ENST00000345941		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
intron-intron	ENST00000495244	ENST00000465365		TCGA	LD	SARC	TCGA-MB-A5YA-01A	RNASEH2B	chr13	51484276	+	LPAR6	chr13	48963948	-
Frame-shit	ENST00000520539	ENST00000262193		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
5CDS-5UTR	ENST00000520539	ENST00000462957		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
Frame-shit	ENST00000220959	ENST00000262193		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
5CDS-5UTR	ENST00000220959	ENST00000462957		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
intron-3CDS	ENST00000518205	ENST00000262193		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
intron-5UTR	ENST00000518205	ENST00000462957		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
Frame-shit	ENST00000521922	ENST00000262193		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
5CDS-5UTR	ENST00000521922	ENST00000462957		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
intron-3CDS	ENST00000519528	ENST00000262193		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
intron-5UTR	ENST00000519528	ENST00000462957		TCGA	LD	SARC	TCGA-MB-A5YA-01A	UBR5	chr8	103424401	-	PSMB1	chr6	170858201	-
Frame-shit	ENST00000320954	ENST00000295743		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
Frame-shit	ENST00000320954	ENST00000449599		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
5CDS-5UTR	ENST00000320954	ENST00000537516		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
5CDS-5UTR	ENST00000320954	ENST00000461503		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
Frame-shit	ENST00000449224	ENST00000295743		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
Frame-shit	ENST00000449224	ENST00000449599		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
5CDS-5UTR	ENST00000449224	ENST00000537516		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
5CDS-5UTR	ENST00000449224	ENST00000461503		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
intron-3CDS	ENST00000485310	ENST00000295743		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
intron-3CDS	ENST00000485310	ENST00000449599		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
intron-5UTR	ENST00000485310	ENST00000537516		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
intron-5UTR	ENST00000485310	ENST00000461503		TCGA	LD	SARC	TCGA-MB-A8JK-01A	CRTAP	chr3	33175757	+	EOMES	chr3	27761816	-
5CDS-5UTR	ENST00000196371	ENST00000585993		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
5CDS-intron	ENST00000196371	ENST00000318050		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
5CDS-5UTR	ENST00000509987	ENST00000585993		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
5CDS-intron	ENST00000509987	ENST00000318050		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
intron-5UTR	ENST00000512084	ENST00000585993		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
intron-intron	ENST00000512084	ENST00000318050		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
intron-5UTR	ENST00000510634	ENST00000585993		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
intron-intron	ENST00000510634	ENST00000318050		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
intron-5UTR	ENST00000513081	ENST00000585993		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
intron-intron	ENST00000513081	ENST00000318050		TCGA	LD	SARC	TCGA-MB-A8JK-01A	OXCT1	chr5	41840553	-	OR4F17	chr19	110625	+
5CDS-5UTR	ENST00000242783	ENST00000242776		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
5CDS-intron	ENST00000242783	ENST00000592927		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
5CDS-intron	ENST00000242783	ENST00000454233		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
intron-5UTR	ENST00000587429	ENST00000242776		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
intron-intron	ENST00000587429	ENST00000592927		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
intron-intron	ENST00000587429	ENST00000454233		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
5CDS-5UTR	ENST00000342216	ENST00000242776		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
5CDS-intron	ENST00000342216	ENST00000592927		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
5CDS-intron	ENST00000342216	ENST00000454233		TCGA	LD	SARC	TCGA-MB-A8JK-01A	PKN1	chr19	14562835	+	DDX39A	chr19	14524036	-
intron-intron	ENST00000261883	ENST00000381395		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-intron	ENST00000261883	ENST00000381406		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-5UTR	ENST00000261883	ENST00000416167		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-intron	ENST00000261883	ENST00000300632		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-intron	ENST00000261883	ENST00000434045		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-intron	ENST00000261883	ENST00000381392		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-intron	ENST00000261883	ENST00000381389		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
intron-intron	ENST00000261883	ENST00000418738		TCGA	LD	SARC	TCGA-MB-A8JL-01A	CILP	chr15	65491400	-	IGF2	chr11	2160259	-
3UTR-3CDS	ENST00000568630	ENST00000450892		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
3UTR-3CDS	ENST00000568630	ENST00000541030		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000545763	ENST00000450892		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000545763	ENST00000541030		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000389936	ENST00000450892		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000389936	ENST00000541030		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000219905	ENST00000450892		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000219905	ENST00000541030		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000566586	ENST00000450892		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000566586	ENST00000541030		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000570161	ENST00000450892		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
intron-3CDS	ENST00000570161	ENST00000541030		TCGA	LD	SARC	TCGA-MB-A8JL-01A	MGA	chr15	41913496	+	STRC	chr15	43897597	-
Frame-shit	ENST00000301015	ENST00000353170		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
Frame-shit	ENST00000301015	ENST00000347925		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
5CDS-5UTR	ENST00000301015	ENST00000566349		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
5CDS-5UTR	ENST00000301015	ENST00000270583		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
intron-3CDS	ENST00000327397	ENST00000353170		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
intron-3CDS	ENST00000327397	ENST00000347925		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
intron-5UTR	ENST00000327397	ENST00000566349		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
intron-5UTR	ENST00000327397	ENST00000270583		TCGA	LD	SARC	TCGA-MB-A8JL-01A	PIEZO1	chr16	88815792	-	KLHDC4	chr16	87748179	-
5UTR-3CDS	ENST00000474820	ENST00000327581		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
5UTR-intron	ENST00000474820	ENST00000497526		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
Frame-shit	ENST00000348849	ENST00000327581		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
5CDS-intron	ENST00000348849	ENST00000497526		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
intron-3CDS	ENST00000409075	ENST00000327581		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
intron-intron	ENST00000409075	ENST00000497526		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
intron-3CDS	ENST00000409289	ENST00000327581		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
intron-intron	ENST00000409289	ENST00000497526		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
Frame-shit	ENST00000392753	ENST00000327581		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
5CDS-intron	ENST00000392753	ENST00000497526		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
intron-3CDS	ENST00000409972	ENST00000327581		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
intron-intron	ENST00000409972	ENST00000497526		TCGA	LD	SARC	TCGA-MB-A8JL-01A	RBMS1	chr2	161349800	-	NT5DC4	chr2	113479395	+
5CDS-5UTR	ENST00000290894	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000290894	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000290894	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000290894	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000290894	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000318390	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000318390	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000318390	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000318390	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000318390	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
3UTR-5UTR	ENST00000560540	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
3UTR-intron	ENST00000560540	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
3UTR-5UTR	ENST00000560540	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
3UTR-5UTR	ENST00000560540	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
3UTR-5UTR	ENST00000560540	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560734	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000560734	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560734	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560734	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560734	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000458022	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-intron	ENST00000458022	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000458022	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000458022	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
5CDS-5UTR	ENST00000458022	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560471	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000560471	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560471	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560471	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000560471	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000561091	ENST00000354329		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000561091	ENST00000529578		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000561091	ENST00000533112		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000561091	ENST00000531253		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000561091	ENST00000527372		TCGA	LD	SARC	TCGA-MB-A8JL-01A	SHF	chr15	45464081	-	MYO18A	chr17	27494039	-
Frame-shit	ENST00000377670	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000377670	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000377670	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000377670	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000244303	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000244303	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000244303	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000244303	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000339613	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000339613	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000339613	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000339613	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000472815	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000472815	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000472815	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000472815	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000300862	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000300862	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000300862	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000300862	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000600383	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000600383	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000600383	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000600383	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000420102	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000420102	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
Frame-shit	ENST00000420102	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000420102	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000525854	ENST00000340748		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000525854	ENST00000540357		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
intron-3CDS	ENST00000525854	ENST00000359526		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
intron-intron	ENST00000525854	ENST00000589538		TCGA	LD	SARC	TCGA-MJ-A68H-01A	HIF3A	chr19	46838243	+	DNMT1	chr19	10277361	-
5CDS-intron	ENST00000601521	ENST00000594786		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000601521	ENST00000599700		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000601521	ENST00000263093		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000601521	ENST00000601355		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598098	ENST00000594786		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598098	ENST00000599700		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598098	ENST00000263093		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598098	ENST00000601355		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598495	ENST00000594786		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598495	ENST00000599700		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598495	ENST00000263093		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000598495	ENST00000601355		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000196551	ENST00000594786		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000196551	ENST00000599700		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000196551	ENST00000263093		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000196551	ENST00000601355		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000596046	ENST00000594786		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000596046	ENST00000599700		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000596046	ENST00000263093		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
5CDS-intron	ENST00000596046	ENST00000601355		TCGA	LD	SARC	TCGA-MJ-A68H-01A	RPS5	chr19	58899612	+	SLC27A5	chr19	59012777	-
intron-3CDS	ENST00000588267	ENST00000519716		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000588267	ENST00000252773		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000588267	ENST00000428389		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000588267	ENST00000551649		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000588267	ENST00000552293		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000588267	ENST00000550896		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000592859	ENST00000519716		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000592859	ENST00000252773		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000592859	ENST00000428389		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000592859	ENST00000551649		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000592859	ENST00000552293		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000592859	ENST00000550896		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000586293	ENST00000519716		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000586293	ENST00000252773		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000586293	ENST00000428389		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000586293	ENST00000551649		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000586293	ENST00000552293		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000586293	ENST00000550896		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000397902	ENST00000519716		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000397902	ENST00000252773		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000397902	ENST00000428389		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000397902	ENST00000551649		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000397902	ENST00000552293		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000397902	ENST00000550896		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000589038	ENST00000519716		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000589038	ENST00000252773		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000589038	ENST00000428389		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000589038	ENST00000551649		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000589038	ENST00000552293		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
intron-3CDS	ENST00000589038	ENST00000550896		TCGA	LD	SARC	TCGA-MJ-A68H-01A	ZNF846	chr19	9896602	-	UNC13A	chr19	17720908	-
In-frame	ENST00000263228	ENST00000290299		TCGA	LD	SARC	TCGA-MO-A47P-01A	UBE2R2	chr9	33817932	+	ATP5O	chr21	35276325	-
5CDS-intron	ENST00000263228	ENST00000496044		TCGA	LD	SARC	TCGA-MO-A47P-01A	UBE2R2	chr9	33817932	+	ATP5O	chr21	35276325	-
5UTR-3CDS	ENST00000328070	ENST00000251775		TCGA	LD	SARC	TCGA-MO-A47P-01A	ZNF71	chr19	57112959	+	SNX4	chr3	125188363	-
5UTR-3CDS	ENST00000328070	ENST00000536067		TCGA	LD	SARC	TCGA-MO-A47P-01A	ZNF71	chr19	57112959	+	SNX4	chr3	125188363	-
5UTR-5UTR	ENST00000328070	ENST00000473417		TCGA	LD	SARC	TCGA-MO-A47P-01A	ZNF71	chr19	57112959	+	SNX4	chr3	125188363	-
3UTR-3CDS	ENST00000594944	ENST00000251775		TCGA	LD	SARC	TCGA-MO-A47P-01A	ZNF71	chr19	57112959	+	SNX4	chr3	125188363	-
3UTR-3CDS	ENST00000594944	ENST00000536067		TCGA	LD	SARC	TCGA-MO-A47P-01A	ZNF71	chr19	57112959	+	SNX4	chr3	125188363	-
3UTR-5UTR	ENST00000594944	ENST00000473417		TCGA	LD	SARC	TCGA-MO-A47P-01A	ZNF71	chr19	57112959	+	SNX4	chr3	125188363	-
5CDS-5UTR	ENST00000434000	ENST00000571669		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5CDS-5UTR	ENST00000434000	ENST00000263092		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5CDS-5UTR	ENST00000434000	ENST00000538844		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5CDS-5UTR	ENST00000591680	ENST00000571669		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5CDS-5UTR	ENST00000591680	ENST00000263092		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5CDS-5UTR	ENST00000591680	ENST00000538844		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5UTR-5UTR	ENST00000586265	ENST00000571669		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5UTR-5UTR	ENST00000586265	ENST00000263092		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5UTR-5UTR	ENST00000586265	ENST00000538844		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
intron-5UTR	ENST00000592154	ENST00000571669		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
intron-5UTR	ENST00000592154	ENST00000263092		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
intron-5UTR	ENST00000592154	ENST00000538844		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
intron-5UTR	ENST00000588554	ENST00000571669		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
intron-5UTR	ENST00000588554	ENST00000263092		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
intron-5UTR	ENST00000588554	ENST00000538844		TCGA	LD	SARC	TCGA-N1-A6IA-01A	GPATCH8	chr17	42512433	-	METTL16	chr17	2381179	-
5CDS-5UTR	ENST00000337273	ENST00000318442		TCGA	LD	SARC	TCGA-N1-A6IA-01A	TNPO1	chr5	72157741	+	ZNF366	chr5	71757337	-
5CDS-5UTR	ENST00000454282	ENST00000318442		TCGA	LD	SARC	TCGA-N1-A6IA-01A	TNPO1	chr5	72157741	+	ZNF366	chr5	71757337	-
intron-5UTR	ENST00000447967	ENST00000318442		TCGA	LD	SARC	TCGA-N1-A6IA-01A	TNPO1	chr5	72157741	+	ZNF366	chr5	71757337	-
5CDS-5UTR	ENST00000523768	ENST00000318442		TCGA	LD	SARC	TCGA-N1-A6IA-01A	TNPO1	chr5	72157741	+	ZNF366	chr5	71757337	-
5CDS-5UTR	ENST00000513944	ENST00000318442		TCGA	LD	SARC	TCGA-N1-A6IA-01A	TNPO1	chr5	72157741	+	ZNF366	chr5	71757337	-
5CDS-5UTR	ENST00000506351	ENST00000318442		TCGA	LD	SARC	TCGA-N1-A6IA-01A	TNPO1	chr5	72157741	+	ZNF366	chr5	71757337	-
Frame-shit	ENST00000360319	ENST00000361866		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
5CDS-intron	ENST00000360319	ENST00000498614		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
Frame-shit	ENST00000422373	ENST00000361866		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
5CDS-intron	ENST00000422373	ENST00000498614		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
Frame-shit	ENST00000369850	ENST00000361866		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
5CDS-intron	ENST00000369850	ENST00000498614		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
intron-3CDS	ENST00000369856	ENST00000361866		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
intron-intron	ENST00000369856	ENST00000498614		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
Frame-shit	ENST00000344736	ENST00000361866		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
5CDS-intron	ENST00000344736	ENST00000498614		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
intron-3CDS	ENST00000498491	ENST00000361866		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
intron-intron	ENST00000498491	ENST00000498614		TCGA	LD	SARC	TCGA-PC-A5DK-01A	FLNA	chrX	153587852	-	COL6A1	chr21	47414081	+
In-frame	ENST00000318217	ENST00000225823		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000318217	ENST00000359872		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-5UTR	ENST00000318217	ENST00000448983		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000394649	ENST00000225823		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000394649	ENST00000359872		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-5UTR	ENST00000394649	ENST00000448983		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000579584	ENST00000225823		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000579584	ENST00000359872		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-5UTR	ENST00000579584	ENST00000448983		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000584232	ENST00000225823		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-3CDS	ENST00000584232	ENST00000359872		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
intron-5UTR	ENST00000584232	ENST00000448983		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000583621	ENST00000225823		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
In-frame	ENST00000583621	ENST00000359872		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-5UTR	ENST00000583621	ENST00000448983		TCGA	LD	SARC	TCGA-PC-A5DL-01A	MYO1D	chr17	31203796	-	ASIC2	chr17	31355410	-
5CDS-intron	ENST00000261497	ENST00000441293		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-intron	ENST00000261497	ENST00000314728		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-intron	ENST00000261497	ENST00000347697		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000261497	ENST00000395618		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000261497	ENST00000575595		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000261497	ENST00000395620		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000261497	ENST00000395626		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000261497	ENST00000571254		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-intron	ENST00000537526	ENST00000441293		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-intron	ENST00000537526	ENST00000314728		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-intron	ENST00000537526	ENST00000347697		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000537526	ENST00000395618		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000537526	ENST00000575595		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000537526	ENST00000395620		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000537526	ENST00000395626		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-5UTR	ENST00000537526	ENST00000571254		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-intron	ENST00000455117	ENST00000441293		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-intron	ENST00000455117	ENST00000314728		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-intron	ENST00000455117	ENST00000347697		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-5UTR	ENST00000455117	ENST00000395618		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-5UTR	ENST00000455117	ENST00000575595		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-5UTR	ENST00000455117	ENST00000395620		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-5UTR	ENST00000455117	ENST00000395626		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5UTR-5UTR	ENST00000455117	ENST00000571254		TCGA	LD	SARC	TCGA-PC-A5DL-01A	USP22	chr17	20931855	-	EPN2	chr17	19213198	+
5CDS-intron	ENST00000337231	ENST00000358598		TCGA	LD	SARC	TCGA-PC-A5DM-01A	CDR2L	chr17	72998323	+	PRKAR1A	chr17	66547225	+
5CDS-intron	ENST00000337231	ENST00000392711		TCGA	LD	SARC	TCGA-PC-A5DM-01A	CDR2L	chr17	72998323	+	PRKAR1A	chr17	66547225	+
5CDS-intron	ENST00000337231	ENST00000589228		TCGA	LD	SARC	TCGA-PC-A5DM-01A	CDR2L	chr17	72998323	+	PRKAR1A	chr17	66547225	+
5CDS-intron	ENST00000337231	ENST00000536854		TCGA	LD	SARC	TCGA-PC-A5DM-01A	CDR2L	chr17	72998323	+	PRKAR1A	chr17	66547225	+
5CDS-intron	ENST00000337231	ENST00000586397		TCGA	LD	SARC	TCGA-PC-A5DM-01A	CDR2L	chr17	72998323	+	PRKAR1A	chr17	66547225	+
5CDS-intron	ENST00000337231	ENST00000588188		TCGA	LD	SARC	TCGA-PC-A5DM-01A	CDR2L	chr17	72998323	+	PRKAR1A	chr17	66547225	+
5CDS-intron	ENST00000295633	ENST00000272852		TCGA	LD	SARC	TCGA-PC-A5DM-01A	FSTL1	chr3	120128379	-	CPO	chr3	98304503	-
5CDS-intron	ENST00000424703	ENST00000272852		TCGA	LD	SARC	TCGA-PC-A5DM-01A	FSTL1	chr3	120128379	-	CPO	chr3	98304503	-
intron-intron	ENST00000485968	ENST00000272852		TCGA	LD	SARC	TCGA-PC-A5DM-01A	FSTL1	chr3	120128379	-	CPO	chr3	98304503	-
5UTR-3CDS	ENST00000380752	ENST00000379561		TCGA	LD	SARC	TCGA-PC-A5DM-01A	SLC7A1	chr13	30127898	-	FOXO1	chr13	41134997	-
5UTR-5UTR	ENST00000380752	ENST00000473775		TCGA	LD	SARC	TCGA-PC-A5DM-01A	SLC7A1	chr13	30127898	-	FOXO1	chr13	41134997	-
intron-3CDS	ENST00000473577	ENST00000379561		TCGA	LD	SARC	TCGA-PC-A5DM-01A	SLC7A1	chr13	30127898	-	FOXO1	chr13	41134997	-
intron-5UTR	ENST00000473577	ENST00000473775		TCGA	LD	SARC	TCGA-PC-A5DM-01A	SLC7A1	chr13	30127898	-	FOXO1	chr13	41134997	-
Frame-shit	ENST00000310924	ENST00000262764		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
Frame-shit	ENST00000310924	ENST00000329897		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
5CDS-3UTR	ENST00000310924	ENST00000588281		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000576768	ENST00000262764		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000576768	ENST00000329897		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3UTR	ENST00000576768	ENST00000588281		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000340848	ENST00000262764		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000340848	ENST00000329897		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3UTR	ENST00000340848	ENST00000588281		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000572862	ENST00000262764		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000572862	ENST00000329897		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3UTR	ENST00000572862	ENST00000588281		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000570373	ENST00000262764		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000570373	ENST00000329897		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3UTR	ENST00000570373	ENST00000588281		TCGA	LD	SARC	TCGA-PC-A5DM-01A	TBC1D16	chr17	77983959	-	PGS1	chr17	76411033	+
intron-3CDS	ENST00000261168	ENST00000306858		TCGA	LD	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14538334	+	FAM83B	chr6	54804504	+
intron-3CDS	ENST00000543189	ENST00000306858		TCGA	LD	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14538334	+	FAM83B	chr6	54804504	+
intron-3CDS	ENST00000536444	ENST00000306858		TCGA	LD	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14538334	+	FAM83B	chr6	54804504	+
Frame-shit	ENST00000544627	ENST00000306858		TCGA	LD	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14538334	+	FAM83B	chr6	54804504	+
3UTR-3CDS	ENST00000541654	ENST00000306858		TCGA	LD	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14538334	+	FAM83B	chr6	54804504	+
intron-3CDS	ENST00000540793	ENST00000306858		TCGA	LD	SARC	TCGA-PC-A5DN-01A	ATF7IP	chr12	14538334	+	FAM83B	chr6	54804504	+
Frame-shit	ENST00000331471	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000331471	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000331471	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000331471	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000488961	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000488961	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000488961	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000488961	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000330891	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000330891	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000330891	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000330891	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000553096	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000553096	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000553096	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000553096	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000476098	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
Frame-shit	ENST00000476098	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000476098	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
5CDS-intron	ENST00000476098	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000266661	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000266661	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000266661	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000266661	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000551160	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000551160	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000551160	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000551160	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393365	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000393365	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000393365	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000393365	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000533674	ENST00000552032		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-3CDS	ENST00000533674	ENST00000547771		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000533674	ENST00000299350		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000533674	ENST00000535034		TCGA	LD	SARC	TCGA-PC-A5DN-01A	BEST3	chr12	70065208	-	MYRFL	chr12	70249060	+
intron-intron	ENST00000424014	ENST00000413918		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000424014	ENST00000353548		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000424014	ENST00000443649		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000424014	ENST00000464942		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000424014	ENST00000267169		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000424014	ENST00000475784		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000539951	ENST00000413918		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000539951	ENST00000353548		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000539951	ENST00000443649		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000539951	ENST00000464942		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000539951	ENST00000267169		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000539951	ENST00000475784		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000537073	ENST00000413918		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000537073	ENST00000353548		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000537073	ENST00000443649		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000537073	ENST00000464942		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000537073	ENST00000267169		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000537073	ENST00000475784		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000543940	ENST00000413918		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000543940	ENST00000353548		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000543940	ENST00000443649		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000543940	ENST00000464942		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000543940	ENST00000267169		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
intron-intron	ENST00000543940	ENST00000475784		TCGA	LD	SARC	TCGA-PC-A5DN-01A	EIF2B1	chr12	124105326	-	DIABLO	chr12	122702805	-
In-frame	ENST00000441802	ENST00000346798		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000354192		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000348990		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000357903		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000358918		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000359726		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000448388		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000440126		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000439274		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
5CDS-intron	ENST00000441802	ENST00000474136		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-3CDS	ENST00000512347	ENST00000346798		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000354192		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000348990		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000357903		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000358918		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000359726		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000448388		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000440126		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000439274		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
intron-intron	ENST00000512347	ENST00000474136		TCGA	LD	SARC	TCGA-PC-A5DN-01A	FAT1	chr4	187627717	-	APP	chr21	27372497	-
In-frame	ENST00000299767	ENST00000462284		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
In-frame	ENST00000299767	ENST00000356290		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
In-frame	ENST00000299767	ENST00000540827		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
In-frame	ENST00000299767	ENST00000258149		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
In-frame	ENST00000299767	ENST00000428863		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000393412		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000258148		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000544561		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000393410		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000393413		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000517852		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000545204		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000350057		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000360430		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000299252		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000348801		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000478070		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
5CDS-intron	ENST00000299767	ENST00000544125		TCGA	LD	SARC	TCGA-PC-A5DN-01A	HSP90B1	chr12	104341208	+	MDM2	chr12	69229609	+
In-frame	ENST00000553277	ENST00000396373		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000553277	ENST00000544715		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
In-frame	ENST00000243077	ENST00000396373		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000243077	ENST00000544715		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
In-frame	ENST00000338962	ENST00000396373		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000338962	ENST00000544715		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
In-frame	ENST00000554174	ENST00000396373		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
5CDS-intron	ENST00000554174	ENST00000544715		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
intron-3CDS	ENST00000553446	ENST00000396373		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
intron-intron	ENST00000553446	ENST00000544715		TCGA	LD	SARC	TCGA-PC-A5DN-01A	LRP1	chr12	57539273	+	ETV6	chr12	12037379	+
Frame-shit	ENST00000550735	ENST00000328827		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
5CDS-intron	ENST00000550735	ENST00000547571		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
Frame-shit	ENST00000551404	ENST00000328827		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
5CDS-intron	ENST00000551404	ENST00000547571		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
intron-3CDS	ENST00000547305	ENST00000328827		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
intron-intron	ENST00000547305	ENST00000547571		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
intron-3CDS	ENST00000546394	ENST00000328827		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
intron-intron	ENST00000546394	ENST00000547571		TCGA	LD	SARC	TCGA-PC-A5DN-01A	MAPKAPK5	chr12	112326422	+	PAWR	chr12	80007389	-
5CDS-3UTR	ENST00000259746	ENST00000426643		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000433741		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000416528		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000445536		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000412919		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000444345		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000416228		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000259746	ENST00000428633		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-3UTR	ENST00000323267	ENST00000426643		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000433741		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000416528		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000445536		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000412919		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000444345		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000416228		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
5CDS-intron	ENST00000323267	ENST00000428633		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-3UTR	ENST00000527188	ENST00000426643		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000433741		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000416528		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000445536		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000412919		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000444345		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000416228		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
intron-intron	ENST00000527188	ENST00000428633		TCGA	LD	SARC	TCGA-PC-A5DN-01A	TMEM63B	chr6	44108835	+	HCG23	chr6	32358469	+
Frame-shit	ENST00000247843	ENST00000283228		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
Frame-shit	ENST00000247843	ENST00000440835		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000247843	ENST00000537619		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000247843	ENST00000378778		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000247843	ENST00000342084		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000247843	ENST00000549308		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
Frame-shit	ENST00000548020	ENST00000283228		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
Frame-shit	ENST00000548020	ENST00000440835		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000548020	ENST00000537619		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000548020	ENST00000378778		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000548020	ENST00000342084		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-5UTR	ENST00000548020	ENST00000549308		TCGA	LD	SARC	TCGA-PC-A5DN-01A	YEATS4	chr12	69764755	+	PTPRR	chr12	71056385	-
5CDS-intron	ENST00000372617	ENST00000360458		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
5CDS-5UTR	ENST00000372617	ENST00000422154		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
5CDS-5UTR	ENST00000372617	ENST00000451301		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
5CDS-intron	ENST00000372617	ENST00000433176		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
5CDS-intron	ENST00000372617	ENST00000423833		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
5CDS-intron	ENST00000372617	ENST00000441076		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
5CDS-intron	ENST00000372617	ENST00000492116		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-intron	ENST00000469567	ENST00000360458		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-5UTR	ENST00000469567	ENST00000422154		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-5UTR	ENST00000469567	ENST00000451301		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-intron	ENST00000469567	ENST00000433176		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-intron	ENST00000469567	ENST00000423833		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-intron	ENST00000469567	ENST00000441076		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-intron	ENST00000469567	ENST00000492116		TCGA	LD	SARC	TCGA-PC-A5DO-01A	GLRA4	chrX	102962152	-	MORF4L2	chrX	102941613	-
intron-3CDS	ENST00000423485	ENST00000254051		TCGA	LD	SARC	TCGA-PC-A5DO-01A	TOP2A	chr17	38545768	-	TNS4	chr17	38640861	-
Frame-shit	ENST00000429654	ENST00000394609		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000405240		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000357376		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000317610		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000357732		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000337526		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000394611		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000429654	ENST00000404909		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
5CDS-intron	ENST00000429654	ENST00000486085		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
5CDS-intron	ENST00000429654	ENST00000354474		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
5CDS-intron	ENST00000429654	ENST00000402434		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000394609		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000405240		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000357376		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000317610		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000357732		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000337526		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000394611		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
Frame-shit	ENST00000340180	ENST00000404909		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
5CDS-intron	ENST00000340180	ENST00000486085		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
5CDS-intron	ENST00000340180	ENST00000354474		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
5CDS-intron	ENST00000340180	ENST00000402434		TCGA	LD	SARC	TCGA-PC-A5DP-01A	ZNF69	chr19	11998801	+	RTN4	chr2	55214834	-
intron-5UTR	ENST00000318698	ENST00000262293		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ANKFN1	chr17	54576459	+	PRR11	chr17	57247109	+
5CDS-5UTR	ENST00000566473	ENST00000262293		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ANKFN1	chr17	54576459	+	PRR11	chr17	57247109	+
intron-5UTR	ENST00000574292	ENST00000262293		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ANKFN1	chr17	54576459	+	PRR11	chr17	57247109	+
intron-3CDS	ENST00000528282	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000528282	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000528282	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000528282	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000530481	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000530481	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000530481	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000530481	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000445890	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000445890	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000445890	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000445890	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-3CDS	ENST00000337057	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-5UTR	ENST00000337057	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-intron	ENST00000337057	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-intron	ENST00000337057	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000530757	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000530757	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000530757	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000530757	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-3CDS	ENST00000392427	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-5UTR	ENST00000392427	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-intron	ENST00000392427	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
5UTR-intron	ENST00000392427	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000368128	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000368128	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000368128	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000368128	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000527411	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000527411	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000527411	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000527411	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000524581	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000524581	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000524581	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000524581	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000525271	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000525271	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000525271	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000525271	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000525193	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000525193	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000525193	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000525193	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000527659	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000527659	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000527659	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000527659	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000529208	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000529208	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000529208	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000529208	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000531410	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000531410	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000531410	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000531410	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-3CDS	ENST00000530148	ENST00000397944		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-5UTR	ENST00000530148	ENST00000367493		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000530148	ENST00000523560		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
intron-intron	ENST00000530148	ENST00000367488		TCGA	LD	SARC	TCGA-QC-A6FX-01A	EPB41L2	chr6	131384295	-	ADGB	chr6	146956511	+
Frame-shit	ENST00000261893	ENST00000321437		TCGA	LD	SARC	TCGA-QC-A6FX-01A	LACTB	chr15	63421849	+	RAB8B	chr15	63536955	+
Frame-shit	ENST00000261893	ENST00000448330		TCGA	LD	SARC	TCGA-QC-A6FX-01A	LACTB	chr15	63421849	+	RAB8B	chr15	63536955	+
In-frame	ENST00000413507	ENST00000321437		TCGA	LD	SARC	TCGA-QC-A6FX-01A	LACTB	chr15	63421849	+	RAB8B	chr15	63536955	+
In-frame	ENST00000413507	ENST00000448330		TCGA	LD	SARC	TCGA-QC-A6FX-01A	LACTB	chr15	63421849	+	RAB8B	chr15	63536955	+
5UTR-3CDS	ENST00000393038	ENST00000318698		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000393038	ENST00000566473		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3UTR	ENST00000393038	ENST00000574292		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000537860	ENST00000318698		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000537860	ENST00000566473		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3UTR	ENST00000537860	ENST00000574292		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000409433	ENST00000318698		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000409433	ENST00000566473		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3UTR	ENST00000409433	ENST00000574292		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
intron-3CDS	ENST00000470557	ENST00000318698		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
intron-3CDS	ENST00000470557	ENST00000566473		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
intron-3UTR	ENST00000470557	ENST00000574292		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000579915	ENST00000318698		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3CDS	ENST00000579915	ENST00000566473		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
5UTR-3UTR	ENST00000579915	ENST00000574292		TCGA	LD	SARC	TCGA-QC-A6FX-01A	PTRH2	chr17	57784732	-	ANKFN1	chr17	54305278	+
In-frame	ENST00000418115	ENST00000545770		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000418115	ENST00000443990		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000418115	ENST00000432035		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
In-frame	ENST00000454011	ENST00000545770		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000454011	ENST00000443990		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000454011	ENST00000432035		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
In-frame	ENST00000422781	ENST00000545770		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000422781	ENST00000443990		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000422781	ENST00000432035		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
intron-3CDS	ENST00000265538	ENST00000545770		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
intron-5UTR	ENST00000265538	ENST00000443990		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
intron-5UTR	ENST00000265538	ENST00000432035		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	C3orf84	chr3	49215971	-
5CDS-5UTR	ENST00000418115	ENST00000321895		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	CCDC71	chr3	49201693	-
5CDS-5UTR	ENST00000454011	ENST00000321895		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	CCDC71	chr3	49201693	-
5CDS-5UTR	ENST00000422781	ENST00000321895		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	CCDC71	chr3	49201693	-
intron-5UTR	ENST00000265538	ENST00000321895		TCGA	LD	SARC	TCGA-QC-A6FX-01A	RHOA	chr3	49412867	-	CCDC71	chr3	49201693	-
5CDS-5UTR	ENST00000392185	ENST00000367102		TCGA	LD	SARC	TCGA-QC-A6FX-01A	SNX9	chr6	158349734	+	SERAC1	chr6	158579396	-
5CDS-5UTR	ENST00000392185	ENST00000367104		TCGA	LD	SARC	TCGA-QC-A6FX-01A	SNX9	chr6	158349734	+	SERAC1	chr6	158579396	-
5CDS-5UTR	ENST00000392185	ENST00000367101		TCGA	LD	SARC	TCGA-QC-A6FX-01A	SNX9	chr6	158349734	+	SERAC1	chr6	158579396	-
5CDS-5UTR	ENST00000392185	ENST00000607000		TCGA	LD	SARC	TCGA-QC-A6FX-01A	SNX9	chr6	158349734	+	SERAC1	chr6	158579396	-
intron-3CDS	ENST00000593635	ENST00000305768		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ZNF730	chr19	23299978	+	CEP89	chr19	33392318	-
intron-intron	ENST00000593635	ENST00000590597		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ZNF730	chr19	23299978	+	CEP89	chr19	33392318	-
intron-intron	ENST00000593635	ENST00000591863		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ZNF730	chr19	23299978	+	CEP89	chr19	33392318	-
Frame-shit	ENST00000597761	ENST00000305768		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ZNF730	chr19	23299978	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000597761	ENST00000590597		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ZNF730	chr19	23299978	+	CEP89	chr19	33392318	-
5CDS-intron	ENST00000597761	ENST00000591863		TCGA	LD	SARC	TCGA-QC-A6FX-01A	ZNF730	chr19	23299978	+	CEP89	chr19	33392318	-
Frame-shit	ENST00000295633	ENST00000335670		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000295633	ENST00000309157		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000295633	ENST00000261523		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000295633	ENST00000449337		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
5CDS-5UTR	ENST00000295633	ENST00000560004		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000424703	ENST00000335670		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000424703	ENST00000309157		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000424703	ENST00000261523		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
Frame-shit	ENST00000424703	ENST00000449337		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
5CDS-5UTR	ENST00000424703	ENST00000560004		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
intron-3CDS	ENST00000485968	ENST00000335670		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
intron-3CDS	ENST00000485968	ENST00000309157		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
intron-3CDS	ENST00000485968	ENST00000261523		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
intron-3CDS	ENST00000485968	ENST00000449337		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
intron-5UTR	ENST00000485968	ENST00000560004		TCGA	LD	SARC	TCGA-QC-AA9N-01A	FSTL1	chr3	120128379	-	RORA	chr15	60824050	-
5CDS-3UTR	ENST00000400546	ENST00000466328		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000400546	ENST00000290349		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000400546	ENST00000530908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000400546	ENST00000439427		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000400546	ENST00000399191		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-3UTR	ENST00000284894	ENST00000466328		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000284894	ENST00000290349		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000284894	ENST00000530908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000284894	ENST00000439427		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000284894	ENST00000399191		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-3UTR	ENST00000535285	ENST00000466328		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000535285	ENST00000290349		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000535285	ENST00000530908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000535285	ENST00000439427		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
5CDS-5UTR	ENST00000535285	ENST00000399191		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
intron-3UTR	ENST00000486367	ENST00000466328		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
intron-5UTR	ENST00000486367	ENST00000290349		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
intron-5UTR	ENST00000486367	ENST00000530908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
intron-5UTR	ENST00000486367	ENST00000439427		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
intron-5UTR	ENST00000486367	ENST00000399191		TCGA	LD	SARC	TCGA-QC-AA9N-01A	NCAM2	chr21	22746333	+	CBR1	chr21	37442390	+
intron-3UTR	ENST00000413465	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000413465	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000413465	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000413465	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000413465	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000413465	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000413465	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-3UTR	ENST00000359597	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000359597	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000359597	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000359597	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000359597	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000359597	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000359597	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-3UTR	ENST00000269305	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000269305	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000269305	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000269305	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000269305	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000269305	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000269305	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-3UTR	ENST00000455263	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000455263	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000455263	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000455263	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000455263	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000455263	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000455263	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-3UTR	ENST00000420246	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000420246	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000420246	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000420246	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000420246	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000420246	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000420246	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-3UTR	ENST00000445888	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000445888	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000445888	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000445888	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000445888	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000445888	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
5UTR-intron	ENST00000445888	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-3UTR	ENST00000574684	ENST00000534836		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000574684	ENST00000541045		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000574684	ENST00000536908		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000574684	ENST00000378738		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000574684	ENST00000394832		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000574684	ENST00000320856		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
intron-intron	ENST00000574684	ENST00000394835		TCGA	LD	SARC	TCGA-QC-AA9N-01A	TP53	chr17	7590695	-	EFCAB5	chr17	28320183	+
Frame-shit	ENST00000399799	ENST00000427562		TCGA	LD	SARC	TCGA-QQ-A5V9-01A	ROCK1	chr18	18619433	-	LAMP5	chr20	9510289	+
In-frame	ENST00000399799	ENST00000246070		TCGA	LD	SARC	TCGA-QQ-A5V9-01A	ROCK1	chr18	18619433	-	LAMP5	chr20	9510289	+
Frame-shit	ENST00000407010	ENST00000306999		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ISPD	chr7	16255691	-	ANKMY2	chr7	16676080	-
5CDS-5UTR	ENST00000407010	ENST00000421746		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ISPD	chr7	16255691	-	ANKMY2	chr7	16676080	-
Frame-shit	ENST00000399310	ENST00000306999		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ISPD	chr7	16255691	-	ANKMY2	chr7	16676080	-
5CDS-5UTR	ENST00000399310	ENST00000421746		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ISPD	chr7	16255691	-	ANKMY2	chr7	16676080	-
intron-3CDS	ENST00000479493	ENST00000306999		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ISPD	chr7	16255691	-	ANKMY2	chr7	16676080	-
intron-5UTR	ENST00000479493	ENST00000421746		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ISPD	chr7	16255691	-	ANKMY2	chr7	16676080	-
Frame-shit	ENST00000268099	ENST00000310169		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SCAMP2	chr15	75137814	-	CHRNA9	chr4	40350899	+
5CDS-intron	ENST00000268099	ENST00000502377		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SCAMP2	chr15	75137814	-	CHRNA9	chr4	40350899	+
In-frame	ENST00000437398	ENST00000322019		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000437398	ENST00000379386		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
Frame-shit	ENST00000437398	ENST00000379390		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000437398	ENST00000565774		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
5CDS-intron	ENST00000437398	ENST00000564988		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000314328	ENST00000322019		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000314328	ENST00000379386		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
Frame-shit	ENST00000314328	ENST00000379390		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000314328	ENST00000565774		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
5CDS-intron	ENST00000314328	ENST00000564988		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000541492	ENST00000322019		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000541492	ENST00000379386		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
Frame-shit	ENST00000541492	ENST00000379390		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
In-frame	ENST00000541492	ENST00000565774		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
5CDS-intron	ENST00000541492	ENST00000564988		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
intron-3CDS	ENST00000416735	ENST00000322019		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
intron-3CDS	ENST00000416735	ENST00000379386		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
intron-3CDS	ENST00000416735	ENST00000379390		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
intron-3CDS	ENST00000416735	ENST00000565774		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
intron-intron	ENST00000416735	ENST00000564988		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	SPECC1L	chr22	24765288	+	TM6SF1	chr15	83796110	+
5CDS-intron	ENST00000416569	ENST00000421627		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	XKR6	chr8	11058085	-	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000416569	ENST00000524065		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	XKR6	chr8	11058085	-	DLGAP2	chr8	857912	+
intron-intron	ENST00000304437	ENST00000421627		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	XKR6	chr8	11058085	-	DLGAP2	chr8	857912	+
intron-intron	ENST00000304437	ENST00000524065		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	XKR6	chr8	11058085	-	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000297303	ENST00000421627		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	XKR6	chr8	11058085	-	DLGAP2	chr8	857912	+
5CDS-intron	ENST00000297303	ENST00000524065		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	XKR6	chr8	11058085	-	DLGAP2	chr8	857912	+
5CDS-5UTR	ENST00000378743	ENST00000393330		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000378743	ENST00000247829		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000378743	ENST00000546561		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000378743	ENST00000552128		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
5CDS-intron	ENST00000378743	ENST00000552786		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000548100	ENST00000393330		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000548100	ENST00000247829		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000548100	ENST00000546561		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000548100	ENST00000552128		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000548100	ENST00000552786		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000552037	ENST00000393330		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000552037	ENST00000247829		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000552037	ENST00000546561		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000552037	ENST00000552128		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000552037	ENST00000552786		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-5UTR	ENST00000549407	ENST00000393330		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549407	ENST00000247829		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549407	ENST00000546561		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549407	ENST00000552128		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
intron-intron	ENST00000549407	ENST00000552786		TCGA	LD	SARC	TCGA-QQ-A5VA-01A	ZFC3H1	chr12	72013095	-	TSPAN8	chr12	71676599	-
In-frame	ENST00000263390	ENST00000378641		TCGA	LD	SARC	TCGA-QQ-A5VB-01A	MED26	chr19	16738683	-	PLCB1	chr20	8608941	+
In-frame	ENST00000263390	ENST00000338037		TCGA	LD	SARC	TCGA-QQ-A5VB-01A	MED26	chr19	16738683	-	PLCB1	chr20	8608941	+
In-frame	ENST00000263390	ENST00000378637		TCGA	LD	SARC	TCGA-QQ-A5VB-01A	MED26	chr19	16738683	-	PLCB1	chr20	8608941	+
5CDS-intron	ENST00000263390	ENST00000494924		TCGA	LD	SARC	TCGA-QQ-A5VB-01A	MED26	chr19	16738683	-	PLCB1	chr20	8608941	+
Frame-shit	ENST00000330386	ENST00000330579		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000330386	ENST00000535343		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000330386	ENST00000538784		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000389561	ENST00000330579		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000389561	ENST00000535343		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000389561	ENST00000538784		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000333577	ENST00000330579		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000333577	ENST00000535343		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000333577	ENST00000538784		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000332482	ENST00000330579		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000332482	ENST00000535343		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000332482	ENST00000538784		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000389562	ENST00000330579		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000389562	ENST00000535343		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000389562	ENST00000538784		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	EP400	chr12	132446499	+	NOC4L	chr12	132635526	+
In-frame	ENST00000281038	ENST00000308488		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
In-frame	ENST00000281038	ENST00000360355		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
Frame-shit	ENST00000281038	ENST00000480887		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
5CDS-intron	ENST00000281038	ENST00000530604		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
In-frame	ENST00000528850	ENST00000308488		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
In-frame	ENST00000528850	ENST00000360355		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
Frame-shit	ENST00000528850	ENST00000480887		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
5CDS-intron	ENST00000528850	ENST00000530604		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	NARS2	chr11	78239888	-	RSF1	chr11	77378536	-
Frame-shit	ENST00000320985	ENST00000376510		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
5CDS-intron	ENST00000320985	ENST00000468633		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
Frame-shit	ENST00000361642	ENST00000376510		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
5CDS-intron	ENST00000361642	ENST00000468633		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
3UTR-3CDS	ENST00000559858	ENST00000376510		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
3UTR-intron	ENST00000559858	ENST00000468633		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
Frame-shit	ENST00000560721	ENST00000376510		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
5CDS-intron	ENST00000560721	ENST00000468633		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
Frame-shit	ENST00000542815	ENST00000376510		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
5CDS-intron	ENST00000542815	ENST00000468633		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
intron-3CDS	ENST00000446923	ENST00000376510		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
intron-intron	ENST00000446923	ENST00000468633		TCGA	LD	SARC	TCGA-QQ-A5VC-01A	ZEB1	chr10	31608221	+	MSRB2	chr10	23399171	+
5UTR-3CDS	ENST00000229195	ENST00000542120		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-3CDS	ENST00000229195	ENST00000229088		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-intron	ENST00000229195	ENST00000456757		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-intron	ENST00000229195	ENST00000539867		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-3CDS	ENST00000418359	ENST00000542120		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-3CDS	ENST00000418359	ENST00000229088		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-intron	ENST00000418359	ENST00000456757		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
5UTR-intron	ENST00000418359	ENST00000539867		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-3CDS	ENST00000548230	ENST00000542120		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-3CDS	ENST00000548230	ENST00000229088		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-intron	ENST00000548230	ENST00000456757		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-intron	ENST00000548230	ENST00000539867		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-3CDS	ENST00000551483	ENST00000542120		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-3CDS	ENST00000551483	ENST00000229088		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-intron	ENST00000551483	ENST00000456757		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
intron-intron	ENST00000551483	ENST00000539867		TCGA	LD	SARC	TCGA-QQ-A8VB-01A	CNOT2	chr12	70637260	+	TBC1D30	chr12	65237160	+
3UTR-3CDS	ENST00000368984	ENST00000225964		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	HTRA1	chr10	124274005	+	COL1A1	chr17	48275358	-
intron-3CDS	ENST00000368445	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
intron-3CDS	ENST00000368449	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
intron-3CDS	ENST00000448116	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
intron-3CDS	ENST00000368450	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
intron-3CDS	ENST00000368453	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
intron-3CDS	ENST00000606391	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
In-frame	ENST00000490667	ENST00000297268		TCGA	LD	SARC	TCGA-QQ-A8VD-01A	SHC1	chr1	154935805	-	COL1A2	chr7	94043002	+
intron-5UTR	ENST00000244289	ENST00000391918		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000244289	ENST00000291295		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000244289	ENST00000597743		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-3UTR	ENST00000244289	ENST00000477244		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-intron	ENST00000244289	ENST00000598871		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000244289	ENST00000594523		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000244289	ENST00000599839		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000244289	ENST00000596362		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000602000	ENST00000391918		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000602000	ENST00000291295		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000602000	ENST00000597743		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-3UTR	ENST00000602000	ENST00000477244		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-intron	ENST00000602000	ENST00000598871		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000602000	ENST00000594523		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000602000	ENST00000599839		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
intron-5UTR	ENST00000602000	ENST00000596362		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	LIPE	chr19	42916517	-	CALM3	chr19	47109084	+
5CDS-intron	ENST00000421905	ENST00000585441		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-5UTR	ENST00000421905	ENST00000590503		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-5UTR	ENST00000421905	ENST00000589413		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-5UTR	ENST00000421905	ENST00000352998		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-intron	ENST00000221462	ENST00000585441		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-5UTR	ENST00000221462	ENST00000590503		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-5UTR	ENST00000221462	ENST00000589413		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5CDS-5UTR	ENST00000221462	ENST00000352998		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
3UTR-intron	ENST00000496125	ENST00000585441		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
3UTR-5UTR	ENST00000496125	ENST00000590503		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
3UTR-5UTR	ENST00000496125	ENST00000589413		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
3UTR-5UTR	ENST00000496125	ENST00000352998		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	PPP1R37	chr19	45596785	+	ZNF383	chr19	37721311	+
5UTR-3CDS	ENST00000595090	ENST00000221455		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
5UTR-3CDS	ENST00000595090	ENST00000391953		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
5UTR-3CDS	ENST00000595090	ENST00000544944		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
5UTR-3CDS	ENST00000601968	ENST00000221455		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
5UTR-3CDS	ENST00000601968	ENST00000391953		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
5UTR-3CDS	ENST00000601968	ENST00000544944		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
intron-3CDS	ENST00000598768	ENST00000221455		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
intron-3CDS	ENST00000598768	ENST00000391953		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
intron-3CDS	ENST00000598768	ENST00000544944		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
intron-3CDS	ENST00000413176	ENST00000221455		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
intron-3CDS	ENST00000413176	ENST00000391953		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
intron-3CDS	ENST00000413176	ENST00000544944		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	RUVBL2	chr19	49497159	+	CLASRP	chr19	45559708	+
5CDS-3UTR	ENST00000322954	ENST00000561975		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000322954	ENST00000445793		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000322954	ENST00000361742		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000322954	ENST00000565159		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000322954	ENST00000435464		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000322954	ENST00000453268		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000322954	ENST00000565540		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000322954	ENST00000419208		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-3UTR	ENST00000539319	ENST00000561975		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000539319	ENST00000445793		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000539319	ENST00000361742		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000539319	ENST00000565159		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000539319	ENST00000435464		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000539319	ENST00000453268		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000539319	ENST00000565540		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000539319	ENST00000419208		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-3UTR	ENST00000379983	ENST00000561975		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000379983	ENST00000445793		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000379983	ENST00000361742		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000379983	ENST00000565159		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000379983	ENST00000435464		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000379983	ENST00000453268		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000379983	ENST00000565540		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000379983	ENST00000419208		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-3UTR	ENST00000560441	ENST00000561975		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000560441	ENST00000445793		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000560441	ENST00000361742		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000560441	ENST00000565159		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000560441	ENST00000435464		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-5UTR	ENST00000560441	ENST00000453268		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000560441	ENST00000565540		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
5CDS-intron	ENST00000560441	ENST00000419208		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-3UTR	ENST00000559183	ENST00000561975		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-5UTR	ENST00000559183	ENST00000445793		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-5UTR	ENST00000559183	ENST00000361742		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-5UTR	ENST00000559183	ENST00000565159		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-5UTR	ENST00000559183	ENST00000435464		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-5UTR	ENST00000559183	ENST00000453268		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-intron	ENST00000559183	ENST00000565540		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
intron-intron	ENST00000559183	ENST00000419208		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	UACA	chr15	70952490	-	ISLR2	chr15	74423548	+
3UTR-5UTR	ENST00000585441	ENST00000284000		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
3UTR-5UTR	ENST00000585441	ENST00000585933		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000590503	ENST00000284000		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000590503	ENST00000585933		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000589413	ENST00000284000		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000589413	ENST00000585933		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000352998	ENST00000284000		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000352998	ENST00000585933		TCGA	LD	SARC	TCGA-QQ-A8VF-01A	ZNF383	chr19	37709176	+	CEBPG	chr19	33870050	+
In-frame	ENST00000367816	ENST00000367843		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367816	ENST00000432587		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367816	ENST00000312263		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367816	ENST00000367840		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
5CDS-3UTR	ENST00000367816	ENST00000470919		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367815	ENST00000367843		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367815	ENST00000432587		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367815	ENST00000312263		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367815	ENST00000367840		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
5CDS-3UTR	ENST00000367815	ENST00000470919		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000499679	ENST00000367843		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000499679	ENST00000432587		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000499679	ENST00000312263		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000499679	ENST00000367840		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
5CDS-3UTR	ENST00000499679	ENST00000470919		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367813	ENST00000367843		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367813	ENST00000432587		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367813	ENST00000312263		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
In-frame	ENST00000367813	ENST00000367840		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
5CDS-3UTR	ENST00000367813	ENST00000470919		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	ATP1B1	chr1	169080736	+	DCAF6	chr1	167921038	+
intron-intron	ENST00000516892	ENST00000329967		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	MEG3	chr14	101297871	+	SIVA1	chr14	105233127	+
intron-intron	ENST00000516892	ENST00000347067		TCGA	LD	SARC	TCGA-QQ-A8VH-01A	MEG3	chr14	101297871	+	SIVA1	chr14	105233127	+
intron-3CDS	ENST00000327921	ENST00000415930		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
intron-3CDS	ENST00000327921	ENST00000356487		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
intron-3CDS	ENST00000327921	ENST00000586425		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
In-frame	ENST00000262233	ENST00000415930		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
In-frame	ENST00000262233	ENST00000356487		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
In-frame	ENST00000262233	ENST00000586425		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
In-frame	ENST00000334192	ENST00000415930		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
In-frame	ENST00000334192	ENST00000356487		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
In-frame	ENST00000334192	ENST00000586425		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
intron-3CDS	ENST00000556758	ENST00000415930		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
intron-3CDS	ENST00000556758	ENST00000356487		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
intron-3CDS	ENST00000556758	ENST00000586425		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	EML1	chr14	100259880	+	GPI	chr19	34884633	+
Frame-shit	ENST00000056233	ENST00000403058		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	NFE2L3	chr7	26217742	+	POU6F2	chr7	39379241	+
Frame-shit	ENST00000056233	ENST00000518318		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	NFE2L3	chr7	26217742	+	POU6F2	chr7	39379241	+
5CDS-3UTR	ENST00000056233	ENST00000517348		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	NFE2L3	chr7	26217742	+	POU6F2	chr7	39379241	+
5CDS-3UTR	ENST00000056233	ENST00000559001		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	NFE2L3	chr7	26217742	+	POU6F2	chr7	39379241	+
5CDS-intron	ENST00000056233	ENST00000464276		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	NFE2L3	chr7	26217742	+	POU6F2	chr7	39379241	+
5CDS-5UTR	ENST00000348165	ENST00000438125		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-5UTR	ENST00000348165	ENST00000435769		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-5UTR	ENST00000348165	ENST00000343721		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-intron	ENST00000348165	ENST00000438904		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-5UTR	ENST00000389103	ENST00000438125		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-5UTR	ENST00000389103	ENST00000435769		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-5UTR	ENST00000389103	ENST00000343721		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
5CDS-intron	ENST00000389103	ENST00000438904		TCGA	LD	SARC	TCGA-RN-AAAQ-01A	UBE3C	chr7	156979713	+	TYW1B	chr7	72159814	-
In-frame	ENST00000261844	ENST00000319445		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
In-frame	ENST00000261844	ENST00000360242		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000261844	ENST00000584156		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000261844	ENST00000358653		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000261844	ENST00000577772		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
intron-3CDS	ENST00000562351	ENST00000319445		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
intron-3CDS	ENST00000562351	ENST00000360242		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
intron-intron	ENST00000562351	ENST00000584156		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
intron-intron	ENST00000562351	ENST00000358653		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
intron-intron	ENST00000562351	ENST00000577772		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000546305	ENST00000319445		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
Frame-shit	ENST00000546305	ENST00000360242		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000546305	ENST00000584156		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000546305	ENST00000358653		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
5CDS-intron	ENST00000546305	ENST00000577772		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	FAM214A	chr15	52885775	-	CCDC102B	chr18	66721267	+
In-frame	ENST00000300976	ENST00000252577		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000300976	ENST00000360315		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000300976	ENST00000537887		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000300976	ENST00000404158		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000300976	ENST00000358713		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000300976	ENST00000429563		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000300976	ENST00000473184		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000595182	ENST00000252577		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000595182	ENST00000360315		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000595182	ENST00000537887		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000595182	ENST00000404158		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000595182	ENST00000358713		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000595182	ENST00000429563		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000595182	ENST00000473184		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000599006	ENST00000252577		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000599006	ENST00000360315		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000599006	ENST00000537887		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000599006	ENST00000404158		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000599006	ENST00000358713		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000599006	ENST00000429563		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000599006	ENST00000473184		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-3CDS	ENST00000596843	ENST00000252577		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-3CDS	ENST00000596843	ENST00000360315		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000596843	ENST00000537887		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000596843	ENST00000404158		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000596843	ENST00000358713		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000596843	ENST00000429563		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
intron-3UTR	ENST00000596843	ENST00000473184		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	KLHL26	chr19	18747947	+	GATAD2A	chr19	19603115	+
Frame-shit	ENST00000281038	ENST00000278550		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	NARS2	chr11	78270585	-	TENM4	chr11	78482183	-
5CDS-intron	ENST00000281038	ENST00000533038		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	NARS2	chr11	78270585	-	TENM4	chr11	78482183	-
5UTR-3CDS	ENST00000528850	ENST00000278550		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	NARS2	chr11	78270585	-	TENM4	chr11	78482183	-
5UTR-intron	ENST00000528850	ENST00000533038		TCGA	LD	SARC	TCGA-SG-A6Z4-01A	NARS2	chr11	78270585	-	TENM4	chr11	78482183	-
Frame-shit	ENST00000216264	ENST00000262738		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
5CDS-intron	ENST00000216264	ENST00000395964		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
5CDS-intron	ENST00000216264	ENST00000497509		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
5UTR-3CDS	ENST00000541677	ENST00000262738		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
5UTR-intron	ENST00000541677	ENST00000395964		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
5UTR-intron	ENST00000541677	ENST00000497509		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
intron-3CDS	ENST00000471929	ENST00000262738		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
intron-intron	ENST00000471929	ENST00000395964		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
intron-intron	ENST00000471929	ENST00000497509		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	CERK	chr22	47133904	-	CELSR1	chr22	46835308	-
Frame-shit	ENST00000452533	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000452533	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000452533	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000452533	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000452533	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000452533	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000452533	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000452533	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000452533	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000553257	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000553257	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000553257	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000549701	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000549701	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000549701	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000358214	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000358214	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000358214	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3CDS	ENST00000548671	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-intron	ENST00000548671	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-intron	ENST00000548671	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000266481	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000266481	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000266481	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000547312	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000547312	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000547312	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-3CDS	ENST00000414834	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-intron	ENST00000414834	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5UTR-intron	ENST00000414834	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000534526		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000531134		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000427716		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000266482		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000546442		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000525053		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
Frame-shit	ENST00000381000	ENST00000381025		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000381000	ENST00000472289		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
5CDS-intron	ENST00000381000	ENST00000473513		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	DNM1L	chr12	32832399	+	FGD4	chr12	32777356	+
3UTR-3UTR	ENST00000446912	ENST00000383314		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
3UTR-3UTR	ENST00000446912	ENST00000592764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
3UTR-3UTR	ENST00000446912	ENST00000262173		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
3UTR-intron	ENST00000446912	ENST00000591922		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
3UTR-intron	ENST00000446912	ENST00000543302		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
3UTR-3UTR	ENST00000446912	ENST00000535051		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
3UTR-intron	ENST00000446912	ENST00000589866		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	FAM157B	chr9	141121553	+	RNMT	chr18	13762038	+
In-frame	ENST00000258111	ENST00000393791		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
In-frame	ENST00000258111	ENST00000356411		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
In-frame	ENST00000258111	ENST00000424809		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
In-frame	ENST00000258111	ENST00000393797		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
In-frame	ENST00000258111	ENST00000550288		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
In-frame	ENST00000258111	ENST00000430041		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
5CDS-5UTR	ENST00000258111	ENST00000550454		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	KCNMB4	chr12	70760850	+	ARHGAP9	chr12	57871052	-
Frame-shit	ENST00000368416	ENST00000368503		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000368416	ENST00000296955		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000368416	ENST00000338728		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
5CDS-intron	ENST00000368416	ENST00000534777		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000368417	ENST00000368503		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000368417	ENST00000296955		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000368417	ENST00000338728		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
5CDS-intron	ENST00000368417	ENST00000534777		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000546092	ENST00000368503		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000546092	ENST00000296955		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000546092	ENST00000338728		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
5CDS-intron	ENST00000546092	ENST00000534777		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
intron-3CDS	ENST00000545433	ENST00000368503		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
intron-3CDS	ENST00000545433	ENST00000296955		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
intron-3CDS	ENST00000545433	ENST00000338728		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
intron-intron	ENST00000545433	ENST00000534777		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
3UTR-3CDS	ENST00000476571	ENST00000368503		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
3UTR-3CDS	ENST00000476571	ENST00000296955		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
3UTR-3CDS	ENST00000476571	ENST00000338728		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
3UTR-intron	ENST00000476571	ENST00000534777		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	NKAIN2	chr6	124125399	+	DCBLD1	chr6	117824930	+
Frame-shit	ENST00000367602	ENST00000334232		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	QSOX1	chr1	180153185	+	EDARADD	chr1	236631531	+
Frame-shit	ENST00000367602	ENST00000359362		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	QSOX1	chr1	180153185	+	EDARADD	chr1	236631531	+
Frame-shit	ENST00000367600	ENST00000334232		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	QSOX1	chr1	180153185	+	EDARADD	chr1	236631531	+
Frame-shit	ENST00000367600	ENST00000359362		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	QSOX1	chr1	180153185	+	EDARADD	chr1	236631531	+
In-frame	ENST00000466444	ENST00000368491		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
In-frame	ENST00000466444	ENST00000368488		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
In-frame	ENST00000466444	ENST00000360290		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
In-frame	ENST00000466444	ENST00000392500		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
In-frame	ENST00000466444	ENST00000419517		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5CDS-intron	ENST00000466444	ENST00000472713		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000392526	ENST00000368491		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000392526	ENST00000368488		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000392526	ENST00000360290		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000392526	ENST00000392500		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000392526	ENST00000419517		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-intron	ENST00000392526	ENST00000472713		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000487832	ENST00000368491		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000487832	ENST00000368488		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000487832	ENST00000360290		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000487832	ENST00000392500		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000487832	ENST00000419517		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-intron	ENST00000487832	ENST00000472713		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
intron-3CDS	ENST00000517800	ENST00000368491		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
intron-3CDS	ENST00000517800	ENST00000368488		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
intron-3CDS	ENST00000517800	ENST00000360290		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
intron-3CDS	ENST00000517800	ENST00000392500		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
intron-3CDS	ENST00000517800	ENST00000419517		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
intron-intron	ENST00000517800	ENST00000472713		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	RWDD1	chr6	116906020	+	CEP85L	chr6	118845083	-
5UTR-3CDS	ENST00000552432	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
5UTR-3CDS	ENST00000547379	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
5UTR-3CDS	ENST00000549465	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
5UTR-3CDS	ENST00000552024	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
intron-3CDS	ENST00000261187	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
intron-3CDS	ENST00000543448	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
intron-3CDS	ENST00000549588	ENST00000261172		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	SLC16A7	chr12	60048989	+	EPYC	chr12	91396312	-
5CDS-intron	ENST00000543727	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000543727	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000550559	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000550559	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000548851	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000548851	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000454289	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000454289	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000540550	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000540550	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000323833	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000323833	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000350762	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
5CDS-intron	ENST00000350762	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
3UTR-intron	ENST00000497617	ENST00000439373		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
3UTR-intron	ENST00000497617	ENST00000367764		TCGA	LD	SARC	TCGA-SG-A6Z7-01A	TSFM	chr12	58180945	+	METTL11B	chr1	170127110	+
In-frame	ENST00000360876	ENST00000380191		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000360876	ENST00000479928		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000360876	ENST00000380132		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000360876	ENST00000380181		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
In-frame	ENST00000397011	ENST00000380191		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000397011	ENST00000479928		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000397011	ENST00000380132		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000397011	ENST00000380181		TCGA	LD	SARC	TCGA-SG-A849-01A	EIF3B	chr7	2418877	+	GDI2	chr10	5828013	-
5CDS-intron	ENST00000380737	ENST00000456845		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-5UTR	ENST00000380737	ENST00000412303		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-intron	ENST00000380737	ENST00000456397		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-5UTR	ENST00000380737	ENST00000397070		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-intron	ENST00000380737	ENST00000522434		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-intron	ENST00000315985	ENST00000456845		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-5UTR	ENST00000315985	ENST00000412303		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-intron	ENST00000315985	ENST00000456397		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-5UTR	ENST00000315985	ENST00000397070		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
5CDS-intron	ENST00000315985	ENST00000522434		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
3UTR-intron	ENST00000523473	ENST00000456845		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
3UTR-5UTR	ENST00000523473	ENST00000412303		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
3UTR-intron	ENST00000523473	ENST00000456397		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
3UTR-5UTR	ENST00000523473	ENST00000397070		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
3UTR-intron	ENST00000523473	ENST00000522434		TCGA	LD	SARC	TCGA-SG-A849-01A	PPP2R2A	chr8	26151256	+	TM2D2	chr8	38853313	-
intron-3UTR	ENST00000297268	ENST00000264193		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94059532	+	CPOX	chr3	98298996	-
In-frame	ENST00000297268	ENST00000541179		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
In-frame	ENST00000297268	ENST00000379749		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
In-frame	ENST00000297268	ENST00000379747		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
In-frame	ENST00000297268	ENST00000379743		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
In-frame	ENST00000297268	ENST00000379742		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
In-frame	ENST00000297268	ENST00000541481		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
5CDS-intron	ENST00000297268	ENST00000497145		TCGA	LD	SARC	TCGA-SI-A71O-01A	COL1A2	chr7	94028396	+	POSTN	chr13	38162123	-
Frame-shit	ENST00000259021	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000259021	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000259021	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
5CDS-intron	ENST00000259021	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000454930	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000454930	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000454930	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-intron	ENST00000454930	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000509773	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000509773	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000509773	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-intron	ENST00000509773	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000510819	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000510819	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000510819	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-intron	ENST00000510819	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000424009	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000424009	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000424009	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
5CDS-intron	ENST00000424009	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000503935	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000503935	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000503935	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
5CDS-intron	ENST00000503935	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000435742	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000435742	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000435742	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
5CDS-intron	ENST00000435742	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000513980	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000513980	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-3CDS	ENST00000513980	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
intron-intron	ENST00000513980	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	KAT7	chr17	47875920	+	F10	chr13	113792771	+
Frame-shit	ENST00000367975	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
Frame-shit	ENST00000367975	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
Frame-shit	ENST00000367975	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
5CDS-3UTR	ENST00000367975	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
Frame-shit	ENST00000342751	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
Frame-shit	ENST00000342751	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
Frame-shit	ENST00000342751	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
5CDS-3UTR	ENST00000342751	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000432287	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000432287	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000432287	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3UTR	ENST00000432287	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000392169	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000392169	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000392169	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3UTR	ENST00000392169	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000513009	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000513009	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000513009	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3UTR	ENST00000513009	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
3UTR-3CDS	ENST00000470743	ENST00000409306		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
3UTR-3CDS	ENST00000470743	ENST00000375551		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
3UTR-3CDS	ENST00000470743	ENST00000375559		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
3UTR-3UTR	ENST00000470743	ENST00000483537		TCGA	LD	SARC	TCGA-SI-A71O-01A	SDHC	chr1	161298287	+	F10	chr13	113783766	+
intron-3CDS	ENST00000276833	ENST00000376236		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-3CDS	ENST00000276833	ENST00000356785		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-intron	ENST00000276833	ENST00000493857		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-3CDS	ENST00000301305	ENST00000376236		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-3CDS	ENST00000301305	ENST00000356785		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-intron	ENST00000301305	ENST00000493857		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-3CDS	ENST00000531013	ENST00000376236		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-3CDS	ENST00000531013	ENST00000356785		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-intron	ENST00000531013	ENST00000493857		TCGA	LD	SARC	TCGA-SI-A71O-01A	SLC39A4	chr8	145637947	-	APBB1IP	chr10	26781256	+
intron-3CDS	ENST00000238571	ENST00000281156		TCGA	LD	SARC	TCGA-SI-A71O-01A	YLPM1	chr14	75291010	+	KHDRBS2	chr6	62442669	-
Frame-shit	ENST00000325680	ENST00000281156		TCGA	LD	SARC	TCGA-SI-A71O-01A	YLPM1	chr14	75291010	+	KHDRBS2	chr6	62442669	-
Frame-shit	ENST00000552421	ENST00000281156		TCGA	LD	SARC	TCGA-SI-A71O-01A	YLPM1	chr14	75291010	+	KHDRBS2	chr6	62442669	-
3UTR-3CDS	ENST00000546901	ENST00000281156		TCGA	LD	SARC	TCGA-SI-A71O-01A	YLPM1	chr14	75291010	+	KHDRBS2	chr6	62442669	-
Frame-shit	ENST00000404984	ENST00000585421		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000404984	ENST00000536189		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000404984	ENST00000262768		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000404984	ENST00000586057		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000402050	ENST00000585421		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000402050	ENST00000536189		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000402050	ENST00000262768		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000402050	ENST00000586057		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000438376	ENST00000585421		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000438376	ENST00000536189		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000438376	ENST00000262768		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000438376	ENST00000586057		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000325979	ENST00000585421		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000325979	ENST00000536189		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000325979	ENST00000262768		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000325979	ENST00000586057		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
intron-3CDS	ENST00000497572	ENST00000585421		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
intron-3CDS	ENST00000497572	ENST00000536189		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
intron-3CDS	ENST00000497572	ENST00000262768		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
intron-3CDS	ENST00000497572	ENST00000586057		TCGA	LD	SARC	TCGA-SI-A71P-01A	IQCE	chr7	2629740	+	TIMP2	chr17	76853728	-
Frame-shit	ENST00000409293	ENST00000078445		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
Frame-shit	ENST00000409293	ENST00000252587		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
Frame-shit	ENST00000409293	ENST00000595923		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
Frame-shit	ENST00000409293	ENST00000602257		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5CDS-intron	ENST00000409293	ENST00000602147		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5UTR-3CDS	ENST00000469144	ENST00000078445		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5UTR-3CDS	ENST00000469144	ENST00000252587		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5UTR-3CDS	ENST00000469144	ENST00000595923		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5UTR-3CDS	ENST00000469144	ENST00000602257		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5UTR-intron	ENST00000469144	ENST00000602147		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
3UTR-3CDS	ENST00000590269	ENST00000078445		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
3UTR-3CDS	ENST00000590269	ENST00000252587		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
3UTR-3CDS	ENST00000590269	ENST00000595923		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
3UTR-3CDS	ENST00000590269	ENST00000602257		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
3UTR-intron	ENST00000590269	ENST00000602147		TCGA	LD	SARC	TCGA-SI-A71Q-01A	C19orf24	chr19	1277298	+	CREB3L3	chr19	4168348	+
5CDS-5UTR	ENST00000543086	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
5CDS-5UTR	ENST00000546231	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
5CDS-5UTR	ENST00000397203	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
5CDS-5UTR	ENST00000360905	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
5CDS-5UTR	ENST00000589028	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
5CDS-5UTR	ENST00000355446	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
3UTR-5UTR	ENST00000536573	ENST00000416067		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ERC1	chr12	1192746	+	TEKT4P2	chr21	9966380	-
intron-3UTR	ENST00000360614	ENST00000441788		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000360614	ENST00000313639		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000360614	ENST00000395095		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-3UTR	ENST00000585374	ENST00000441788		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000585374	ENST00000313639		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000585374	ENST00000395095		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-3UTR	ENST00000593119	ENST00000441788		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000593119	ENST00000313639		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000593119	ENST00000395095		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-3UTR	ENST00000540670	ENST00000441788		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000540670	ENST00000313639		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000540670	ENST00000395095		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-3UTR	ENST00000590729	ENST00000441788		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000590729	ENST00000313639		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000590729	ENST00000395095		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-3UTR	ENST00000590511	ENST00000441788		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000590511	ENST00000313639		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
intron-intron	ENST00000590511	ENST00000395095		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LONP1	chr19	5694661	-	FZR1	chr19	3535148	+
Frame-shit	ENST00000360375	ENST00000373249		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LRRCC1	chr8	86022415	+	SAYSD1	chr6	39073552	-
In-frame	ENST00000360375	ENST00000229903		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LRRCC1	chr8	86022415	+	SAYSD1	chr6	39073552	-
5CDS-intron	ENST00000360375	ENST00000481599		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LRRCC1	chr8	86022415	+	SAYSD1	chr6	39073552	-
Frame-shit	ENST00000414626	ENST00000373249		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LRRCC1	chr8	86022415	+	SAYSD1	chr6	39073552	-
In-frame	ENST00000414626	ENST00000229903		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LRRCC1	chr8	86022415	+	SAYSD1	chr6	39073552	-
5CDS-intron	ENST00000414626	ENST00000481599		TCGA	LD	SARC	TCGA-SI-A71Q-01A	LRRCC1	chr8	86022415	+	SAYSD1	chr6	39073552	-
3UTR-3CDS	ENST00000578646	ENST00000392313		TCGA	LD	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19285084	+	MAU2	chr19	19446527	+
3UTR-intron	ENST00000578646	ENST00000262815		TCGA	LD	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19285084	+	MAU2	chr19	19446527	+
3UTR-3UTR	ENST00000578646	ENST00000586189		TCGA	LD	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19285084	+	MAU2	chr19	19446527	+
intron-3CDS	ENST00000261537	ENST00000392313		TCGA	LD	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19285084	+	MAU2	chr19	19446527	+
intron-intron	ENST00000261537	ENST00000262815		TCGA	LD	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19285084	+	MAU2	chr19	19446527	+
intron-3UTR	ENST00000261537	ENST00000586189		TCGA	LD	SARC	TCGA-SI-A71Q-01A	MIB1	chr18	19285084	+	MAU2	chr19	19446527	+
5CDS-intron	ENST00000257829	ENST00000406787		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000257829	ENST00000342303		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000257829	ENST00000407364		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000257829	ENST00000303459		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000257829	ENST00000403099		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000257829	ENST00000379199		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000531159	ENST00000406787		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000531159	ENST00000342303		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000531159	ENST00000407364		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000531159	ENST00000303459		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000531159	ENST00000403099		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5CDS-intron	ENST00000531159	ENST00000379199		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000527971	ENST00000406787		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000527971	ENST00000342303		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000527971	ENST00000407364		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000527971	ENST00000303459		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000527971	ENST00000403099		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000527971	ENST00000379199		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000532555	ENST00000406787		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000532555	ENST00000342303		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000532555	ENST00000407364		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000532555	ENST00000303459		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000532555	ENST00000403099		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
intron-intron	ENST00000532555	ENST00000379199		TCGA	LD	SARC	TCGA-SI-A71Q-01A	NAT10	chr11	34145402	+	METTL15	chr11	28420335	+
5UTR-3CDS	ENST00000518164	ENST00000549190		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-3CDS	ENST00000518164	ENST00000395580		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-3CDS	ENST00000518164	ENST00000337898		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-3CDS	ENST00000518164	ENST00000358314		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-3CDS	ENST00000518164	ENST00000395568		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-5UTR	ENST00000518164	ENST00000256678		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-5UTR	ENST00000518164	ENST00000449194		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-5UTR	ENST00000518164	ENST00000552761		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-5UTR	ENST00000518164	ENST00000317560		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-5UTR	ENST00000518164	ENST00000432191		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5UTR-intron	ENST00000518164	ENST00000550535		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000521291	ENST00000549190		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000521291	ENST00000395580		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000521291	ENST00000337898		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000521291	ENST00000358314		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000521291	ENST00000395568		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000521291	ENST00000256678		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000521291	ENST00000449194		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000521291	ENST00000552761		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000521291	ENST00000317560		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000521291	ENST00000432191		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-intron	ENST00000521291	ENST00000550535		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000396070	ENST00000549190		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000396070	ENST00000395580		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000396070	ENST00000337898		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000396070	ENST00000358314		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000396070	ENST00000395568		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000396070	ENST00000256678		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000396070	ENST00000449194		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000396070	ENST00000552761		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000396070	ENST00000317560		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000396070	ENST00000432191		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-intron	ENST00000396070	ENST00000550535		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000287038	ENST00000549190		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000287038	ENST00000395580		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000287038	ENST00000337898		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000287038	ENST00000358314		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
In-frame	ENST00000287038	ENST00000395568		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000287038	ENST00000256678		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000287038	ENST00000449194		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000287038	ENST00000552761		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000287038	ENST00000317560		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-5UTR	ENST00000287038	ENST00000432191		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
5CDS-intron	ENST00000287038	ENST00000550535		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-3CDS	ENST00000523172	ENST00000549190		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-3CDS	ENST00000523172	ENST00000395580		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-3CDS	ENST00000523172	ENST00000337898		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-3CDS	ENST00000523172	ENST00000358314		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-3CDS	ENST00000523172	ENST00000395568		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-5UTR	ENST00000523172	ENST00000256678		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-5UTR	ENST00000523172	ENST00000449194		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-5UTR	ENST00000523172	ENST00000552761		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-5UTR	ENST00000523172	ENST00000317560		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-5UTR	ENST00000523172	ENST00000432191		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-intron	ENST00000523172	ENST00000550535		TCGA	LD	SARC	TCGA-SI-A71Q-01A	RPL30	chr8	99057171	-	PPHLN1	chr12	42768665	+
intron-3CDS	ENST00000487416	ENST00000455140		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000487416	ENST00000248070		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000487416	ENST00000535753		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000487416	ENST00000594975		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000487416	ENST00000602009		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000487416	ENST00000597937		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000597711	ENST00000455140		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000597711	ENST00000248070		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000597711	ENST00000535753		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000597711	ENST00000594975		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000597711	ENST00000602009		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000597711	ENST00000597937		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000397349	ENST00000455140		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000397349	ENST00000248070		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000397349	ENST00000535753		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000397349	ENST00000594975		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000397349	ENST00000602009		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000397349	ENST00000597937		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000358726	ENST00000455140		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000358726	ENST00000248070		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000358726	ENST00000535753		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000358726	ENST00000594975		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000358726	ENST00000602009		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
intron-3CDS	ENST00000358726	ENST00000597937		TCGA	LD	SARC	TCGA-SI-A71Q-01A	SMIM7	chr19	16757931	-	EPS15L1	chr19	16528915	-
Frame-shit	ENST00000265077	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000265077	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
5CDS-intron	ENST00000265077	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000342785	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000342785	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
5CDS-intron	ENST00000342785	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000343200	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000343200	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
5CDS-intron	ENST00000343200	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000512590	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000512590	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
5CDS-intron	ENST00000512590	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000502527	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000502527	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
5CDS-intron	ENST00000502527	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
intron-3CDS	ENST00000513016	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
intron-3CDS	ENST00000513016	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
intron-intron	ENST00000513016	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000513984	ENST00000296591		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
Frame-shit	ENST00000513984	ENST00000380138		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
5CDS-intron	ENST00000513984	ENST00000510271		TCGA	LD	SARC	TCGA-SI-A71Q-01A	VCAN	chr5	82789750	+	EDIL3	chr5	83259179	-
In-frame	ENST00000416488	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000416488	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000416488	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000416488	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000416488	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536435	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536435	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536435	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536435	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536435	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000228289	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000228289	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000228289	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000228289	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000228289	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541211	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541211	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541211	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541211	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541211	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000539248	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000539248	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000539248	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000539248	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000539248	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542711	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542711	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542711	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542711	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542711	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
5UTR-3CDS	ENST00000537565	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
5UTR-3CDS	ENST00000537565	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
5UTR-3CDS	ENST00000537565	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
5UTR-3CDS	ENST00000537565	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
5UTR-3CDS	ENST00000537565	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536899	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536899	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536899	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536899	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000536899	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542986	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542986	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542986	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542986	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000542986	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541009	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541009	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541009	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541009	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000541009	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000592241	ENST00000374431		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000592241	ENST00000541779		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000592241	ENST00000374430		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000592241	ENST00000358883		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000592241	ENST00000538760		TCGA	LD	SARC	TCGA-SI-A71Q-01A	ZNF268	chr12	133758616	+	LPAR1	chr9	113704448	-
In-frame	ENST00000235307	ENST00000234816		TCGA	LD	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178822922	-
In-frame	ENST00000235307	ENST00000367629		TCGA	LD	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178822922	-
intron-3CDS	ENST00000367514	ENST00000234816		TCGA	LD	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178822922	-
intron-3CDS	ENST00000367514	ENST00000367629		TCGA	LD	SARC	TCGA-SI-AA8B-01A	C1orf21	chr1	184446737	+	ANGPTL1	chr1	178822922	-
In-frame	ENST00000278980	ENST00000278979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000278980	ENST00000398083		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000278980	ENST00000486996		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000278980	ENST00000398084		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000278980	ENST00000375966		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000278980	ENST00000339738		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000278980	ENST00000493115		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
In-frame	ENST00000446419	ENST00000278979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000446419	ENST00000398083		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000446419	ENST00000486996		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000446419	ENST00000398084		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000446419	ENST00000375966		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000446419	ENST00000339738		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-5UTR	ENST00000446419	ENST00000493115		TCGA	LD	SARC	TCGA-SI-AA8B-01A	COMMD7	chr20	31331114	-	DUSP15	chr20	30457400	-
5CDS-3UTR	ENST00000580170	ENST00000565759		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-intron	ENST00000580170	ENST00000568986		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000580170	ENST00000565979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000580170	ENST00000565811		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000332175	ENST00000565759		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-intron	ENST00000332175	ENST00000568986		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000332175	ENST00000565979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000332175	ENST00000565811		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000400060	ENST00000565759		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-intron	ENST00000400060	ENST00000568986		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000400060	ENST00000565979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000400060	ENST00000565811		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000400053	ENST00000565759		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-intron	ENST00000400053	ENST00000568986		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000400053	ENST00000565979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000400053	ENST00000565811		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000444013	ENST00000565759		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-intron	ENST00000444013	ENST00000568986		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000444013	ENST00000565979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
5CDS-3UTR	ENST00000444013	ENST00000565811		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
intron-3UTR	ENST00000578571	ENST00000565759		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
intron-intron	ENST00000578571	ENST00000568986		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
intron-3UTR	ENST00000578571	ENST00000565979		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
intron-3UTR	ENST00000578571	ENST00000565811		TCGA	LD	SARC	TCGA-SI-AA8B-01A	PTPRM	chr18	7955412	+	DLGAP1-AS5	chr18	4293160	+
In-frame	ENST00000395184	ENST00000395169		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395184	ENST00000359221		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000395184	ENST00000361569		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395184	ENST00000395166		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395184	ENST00000449047		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395184	ENST00000395161		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000395184	ENST00000513839		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000395184	ENST00000395157		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000395184	ENST00000395160		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000503995	ENST00000395169		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000503995	ENST00000359221		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000503995	ENST00000361569		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000503995	ENST00000395166		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000503995	ENST00000449047		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000503995	ENST00000395161		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000503995	ENST00000513839		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000503995	ENST00000395157		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000503995	ENST00000395160		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-3CDS	ENST00000506421	ENST00000395169		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-3CDS	ENST00000506421	ENST00000359221		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-3CDS	ENST00000506421	ENST00000361569		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-3CDS	ENST00000506421	ENST00000395166		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-3CDS	ENST00000506421	ENST00000449047		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-3CDS	ENST00000506421	ENST00000395161		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-intron	ENST00000506421	ENST00000513839		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-intron	ENST00000506421	ENST00000395157		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
intron-intron	ENST00000506421	ENST00000395160		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000395183	ENST00000395169		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395183	ENST00000359221		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000395183	ENST00000361569		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395183	ENST00000395166		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395183	ENST00000449047		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000395183	ENST00000395161		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000395183	ENST00000513839		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000395183	ENST00000395157		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000395183	ENST00000395160		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000264343	ENST00000395169		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000264343	ENST00000359221		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000264343	ENST00000361569		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000264343	ENST00000395166		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000264343	ENST00000449047		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
Frame-shit	ENST00000264343	ENST00000395161		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000264343	ENST00000513839		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000264343	ENST00000395157		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
5CDS-intron	ENST00000264343	ENST00000395160		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ARHGAP24	chr4	86863426	+	MAPK10	chr4	86938523	-
In-frame	ENST00000326427	ENST00000297268		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ITM2C	chr2	231740523	+	COL1A2	chr7	94043534	+
In-frame	ENST00000335005	ENST00000297268		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ITM2C	chr2	231740523	+	COL1A2	chr7	94043534	+
In-frame	ENST00000326407	ENST00000297268		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ITM2C	chr2	231740523	+	COL1A2	chr7	94043534	+
In-frame	ENST00000409704	ENST00000297268		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ITM2C	chr2	231740523	+	COL1A2	chr7	94043534	+
3UTR-3CDS	ENST00000492029	ENST00000297268		TCGA	LD	SARC	TCGA-SI-AA8C-01A	ITM2C	chr2	231740523	+	COL1A2	chr7	94043534	+
Frame-shit	ENST00000360252	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000360252	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000360252	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000360252	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000360252	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000360252	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
5CDS-intron	ENST00000360252	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000475892	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000475892	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000475892	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000475892	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000475892	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000475892	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
5CDS-intron	ENST00000475892	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000356185	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000356185	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000356185	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000356185	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000356185	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000356185	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
5CDS-intron	ENST00000356185	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000350612	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000350612	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000350612	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000350612	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000350612	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000350612	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
5CDS-intron	ENST00000350612	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000464744	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000464744	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000464744	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000464744	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000464744	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
Frame-shit	ENST00000464744	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
5CDS-intron	ENST00000464744	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000542180	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000542180	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000542180	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000542180	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000542180	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000542180	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-intron	ENST00000542180	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000470359	ENST00000541179		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000470359	ENST00000379749		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000470359	ENST00000379747		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000470359	ENST00000379743		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000470359	ENST00000379742		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-3CDS	ENST00000470359	ENST00000541481		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
intron-intron	ENST00000470359	ENST00000497145		TCGA	LD	SARC	TCGA-VT-A80G-01A	SUPT20H	chr13	37603902	-	POSTN	chr13	38138697	-
In-frame	ENST00000310380	ENST00000306376		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000310380	ENST00000434744		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000310380	ENST00000537818		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
5CDS-intron	ENST00000310380	ENST00000480706		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
Frame-shit	ENST00000437101	ENST00000306376		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
Frame-shit	ENST00000437101	ENST00000434744		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
Frame-shit	ENST00000437101	ENST00000537818		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
5CDS-intron	ENST00000437101	ENST00000480706		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000429994	ENST00000306376		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000429994	ENST00000434744		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000429994	ENST00000537818		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
5CDS-intron	ENST00000429994	ENST00000480706		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000355729	ENST00000306376		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000355729	ENST00000434744		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
In-frame	ENST00000355729	ENST00000537818		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
5CDS-intron	ENST00000355729	ENST00000480706		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-3CDS	ENST00000460582	ENST00000306376		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-3CDS	ENST00000460582	ENST00000434744		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-3CDS	ENST00000460582	ENST00000537818		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-intron	ENST00000460582	ENST00000480706		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-3CDS	ENST00000356740	ENST00000306376		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-3CDS	ENST00000356740	ENST00000434744		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-3CDS	ENST00000356740	ENST00000537818		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
intron-intron	ENST00000356740	ENST00000480706		TCGA	LD	SARC	TCGA-VT-A80G-01A	XXYLT1	chr3	194877178	-	ETV5	chr3	185783861	-
3UTR-5UTR	ENST00000506646	ENST00000256509		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
3UTR-5UTR	ENST00000506646	ENST00000397491		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
3UTR-3UTR	ENST00000506646	ENST00000489224		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
5CDS-5UTR	ENST00000507078	ENST00000256509		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
5CDS-5UTR	ENST00000507078	ENST00000397491		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
5CDS-3UTR	ENST00000507078	ENST00000489224		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
intron-5UTR	ENST00000338977	ENST00000256509		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
intron-5UTR	ENST00000338977	ENST00000397491		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
intron-3UTR	ENST00000338977	ENST00000489224		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
intron-5UTR	ENST00000511833	ENST00000256509		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
intron-5UTR	ENST00000511833	ENST00000397491		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
intron-3UTR	ENST00000511833	ENST00000489224		TCGA	LD	SARC	TCGA-VT-A80G-01A	ZNF721	chr4	429559	-	CHL1	chr3	286296	+
In-frame	ENST00000367942	ENST00000511685		TCGA	LD	SARC	TCGA-VT-A80J-01A	ATF6	chr1	161762117	+	TENM3	chr4	183522077	+
In-frame	ENST00000367942	ENST00000406950		TCGA	LD	SARC	TCGA-VT-A80J-01A	ATF6	chr1	161762117	+	TENM3	chr4	183522077	+
5CDS-intron	ENST00000367942	ENST00000502950		TCGA	LD	SARC	TCGA-VT-A80J-01A	ATF6	chr1	161762117	+	TENM3	chr4	183522077	+
intron-3CDS	ENST00000476437	ENST00000511685		TCGA	LD	SARC	TCGA-VT-A80J-01A	ATF6	chr1	161762117	+	TENM3	chr4	183522077	+
intron-3CDS	ENST00000476437	ENST00000406950		TCGA	LD	SARC	TCGA-VT-A80J-01A	ATF6	chr1	161762117	+	TENM3	chr4	183522077	+
intron-intron	ENST00000476437	ENST00000502950		TCGA	LD	SARC	TCGA-VT-A80J-01A	ATF6	chr1	161762117	+	TENM3	chr4	183522077	+
Frame-shit	ENST00000371378	ENST00000371073		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000371378	ENST00000290039		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
5CDS-3UTR	ENST00000371378	ENST00000495994		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000194214	ENST00000371073		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000194214	ENST00000290039		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
5CDS-3UTR	ENST00000194214	ENST00000495994		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000371377	ENST00000371073		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000371377	ENST00000290039		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
5CDS-3UTR	ENST00000371377	ENST00000495994		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
intron-3CDS	ENST00000489675	ENST00000371073		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
intron-3CDS	ENST00000489675	ENST00000290039		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
intron-3UTR	ENST00000489675	ENST00000495994		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000371376	ENST00000371073		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
Frame-shit	ENST00000371376	ENST00000290039		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
5CDS-3UTR	ENST00000371376	ENST00000495994		TCGA	LD	SARC	TCGA-VT-A80J-01A	HSPB11	chr1	54405658	-	CACHD1	chr1	65145278	+
3UTR-3UTR	ENST00000568630	ENST00000558351		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
3UTR-3UTR	ENST00000568630	ENST00000334660		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
3UTR-3UTR	ENST00000568630	ENST00000560397		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000545763	ENST00000558351		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000545763	ENST00000334660		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000545763	ENST00000560397		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000389936	ENST00000558351		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000389936	ENST00000334660		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000389936	ENST00000560397		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000219905	ENST00000558351		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000219905	ENST00000334660		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000219905	ENST00000560397		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000566586	ENST00000558351		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000566586	ENST00000334660		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000566586	ENST00000560397		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000570161	ENST00000558351		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000570161	ENST00000334660		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
intron-3UTR	ENST00000570161	ENST00000560397		TCGA	LD	SARC	TCGA-VT-A80J-01A	MGA	chr15	41913496	+	CHP1	chr15	41562755	+
In-frame	ENST00000229195	ENST00000547691		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000229195	ENST00000552810		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000229195	ENST00000397838		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000229195	ENST00000309041		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000418359	ENST00000547691		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000418359	ENST00000552810		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000418359	ENST00000397838		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000418359	ENST00000309041		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000548230	ENST00000547691		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000548230	ENST00000552810		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000548230	ENST00000397838		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000548230	ENST00000309041		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000551483	ENST00000547691		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000551483	ENST00000552810		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000551483	ENST00000397838		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
intron-3CDS	ENST00000551483	ENST00000309041		TCGA	LD	SARC	TCGA-WK-A8XO-01A	CNOT2	chr12	70672054	+	CEP290	chr12	88483264	-
In-frame	ENST00000228741	ENST00000229179		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
5CDS-intron	ENST00000228741	ENST00000378905		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
5CDS-intron	ENST00000228741	ENST00000539906		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
5CDS-intron	ENST00000228741	ENST00000401003		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-3CDS	ENST00000552142	ENST00000229179		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-intron	ENST00000552142	ENST00000378905		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-intron	ENST00000552142	ENST00000539906		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-intron	ENST00000552142	ENST00000401003		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-3CDS	ENST00000549529	ENST00000229179		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-intron	ENST00000549529	ENST00000378905		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-intron	ENST00000549529	ENST00000539906		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
intron-intron	ENST00000549529	ENST00000401003		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ELK3	chr12	96641512	+	NUP107	chr12	69124890	+
In-frame	ENST00000462284	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
Frame-shit	ENST00000462284	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000356290	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000356290	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000540827	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000540827	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
In-frame	ENST00000258149	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
Frame-shit	ENST00000258149	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000428863	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000428863	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000393412	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000393412	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
In-frame	ENST00000258148	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
Frame-shit	ENST00000258148	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000544561	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000544561	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000393410	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000393410	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000393413	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000393413	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000517852	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000517852	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000545204	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000545204	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
In-frame	ENST00000350057	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
Frame-shit	ENST00000350057	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000360430	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000360430	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000299252	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000299252	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000348801	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000348801	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000478070	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000478070	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000544125	ENST00000538666		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
intron-3CDS	ENST00000544125	ENST00000328087		TCGA	LD	SARC	TCGA-WK-A8XO-01A	MDM2	chr12	69222711	+	IL22	chr12	68642656	-
In-frame	ENST00000343702	ENST00000299300		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000343702	ENST00000544368		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000343702	ENST00000543146		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000344911	ENST00000299300		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000344911	ENST00000544368		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000344911	ENST00000543146		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
Frame-shit	ENST00000538383	ENST00000299300		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
Frame-shit	ENST00000538383	ENST00000544368		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
Frame-shit	ENST00000538383	ENST00000543146		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000553059	ENST00000299300		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000553059	ENST00000544368		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000553059	ENST00000543146		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
intron-3CDS	ENST00000552603	ENST00000299300		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
intron-3CDS	ENST00000552603	ENST00000544368		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
intron-3CDS	ENST00000552603	ENST00000543146		TCGA	LD	SARC	TCGA-WK-A8XO-01A	NTN4	chr12	96106990	-	CCT2	chr12	69990936	+
In-frame	ENST00000481195	ENST00000253754		TCGA	LD	SARC	TCGA-WK-A8XO-01A	PPP2CA	chr5	133561451	-	PDLIM4	chr5	131598302	+
In-frame	ENST00000481195	ENST00000379018		TCGA	LD	SARC	TCGA-WK-A8XO-01A	PPP2CA	chr5	133561451	-	PDLIM4	chr5	131598302	+
5CDS-intron	ENST00000481195	ENST00000484620		TCGA	LD	SARC	TCGA-WK-A8XO-01A	PPP2CA	chr5	133561451	-	PDLIM4	chr5	131598302	+
5UTR-3CDS	ENST00000231504	ENST00000253754		TCGA	LD	SARC	TCGA-WK-A8XO-01A	PPP2CA	chr5	133561451	-	PDLIM4	chr5	131598302	+
5UTR-3CDS	ENST00000231504	ENST00000379018		TCGA	LD	SARC	TCGA-WK-A8XO-01A	PPP2CA	chr5	133561451	-	PDLIM4	chr5	131598302	+
5UTR-intron	ENST00000231504	ENST00000484620		TCGA	LD	SARC	TCGA-WK-A8XO-01A	PPP2CA	chr5	133561451	-	PDLIM4	chr5	131598302	+
Frame-shit	ENST00000266712	ENST00000426496		TCGA	LD	SARC	TCGA-WK-A8XO-01A	TMTC3	chr12	88570096	+	PRRC2C	chr1	171560726	+
Frame-shit	ENST00000266712	ENST00000392078		TCGA	LD	SARC	TCGA-WK-A8XO-01A	TMTC3	chr12	88570096	+	PRRC2C	chr1	171560726	+
5CDS-intron	ENST00000266712	ENST00000476522		TCGA	LD	SARC	TCGA-WK-A8XO-01A	TMTC3	chr12	88570096	+	PRRC2C	chr1	171560726	+
5CDS-intron	ENST00000266712	ENST00000367742		TCGA	LD	SARC	TCGA-WK-A8XO-01A	TMTC3	chr12	88570096	+	PRRC2C	chr1	171560726	+
5CDS-intron	ENST00000266712	ENST00000338920		TCGA	LD	SARC	TCGA-WK-A8XO-01A	TMTC3	chr12	88570096	+	PRRC2C	chr1	171560726	+
intron-3CDS	ENST00000595830	ENST00000595618		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000595830	ENST00000594824		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000595830	ENST00000397274		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-intron	ENST00000595830	ENST00000593411		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000396147	ENST00000595618		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000396147	ENST00000594824		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000396147	ENST00000397274		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-intron	ENST00000396147	ENST00000593411		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000599086	ENST00000595618		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000599086	ENST00000594824		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000599086	ENST00000397274		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-intron	ENST00000599086	ENST00000593411		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000425570	ENST00000595618		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000425570	ENST00000594824		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000425570	ENST00000397274		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-intron	ENST00000425570	ENST00000593411		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
In-frame	ENST00000600989	ENST00000595618		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
In-frame	ENST00000600989	ENST00000594824		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
In-frame	ENST00000600989	ENST00000397274		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
5CDS-intron	ENST00000600989	ENST00000593411		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000599852	ENST00000595618		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000599852	ENST00000594824		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-3CDS	ENST00000599852	ENST00000397274		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
intron-intron	ENST00000599852	ENST00000593411		TCGA	LD	SARC	TCGA-WK-A8XO-01A	ZNF418	chr19	58439345	-	MYO9B	chr19	17320395	+
5CDS-intron	ENST00000331493	ENST00000525037		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000331493	ENST00000530173		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000331493	ENST00000322157		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000331493	ENST00000544660		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000517484	ENST00000525037		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000517484	ENST00000530173		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000517484	ENST00000322157		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
5CDS-intron	ENST00000517484	ENST00000544660		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
intron-intron	ENST00000520802	ENST00000525037		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
intron-intron	ENST00000520802	ENST00000530173		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
intron-intron	ENST00000520802	ENST00000322157		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
intron-intron	ENST00000520802	ENST00000544660		TCGA	LD	SARC	TCGA-WK-A8XS-01A	EFCAB13	chr17	45452332	+	NPEPPS	chr17	45689826	+
In-frame	ENST00000415083	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000415083	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542420	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542743	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000539849	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000269137	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000545952	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000336777		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000337502		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-5UTR	ENST00000585241	ENST00000476392		TCGA	LD	SARC	TCGA-WK-A8XT-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000372980	ENST00000389120		TCGA	LD	SARC	TCGA-WK-A8XX-01A	JPH2	chr20	42788258	-	RNF20	chr9	104297680	+
5CDS-3UTR	ENST00000372980	ENST00000481046		TCGA	LD	SARC	TCGA-WK-A8XX-01A	JPH2	chr20	42788258	-	RNF20	chr9	104297680	+
intron-5UTR	ENST00000342272	ENST00000389120		TCGA	LD	SARC	TCGA-WK-A8XX-01A	JPH2	chr20	42788258	-	RNF20	chr9	104297680	+
intron-3UTR	ENST00000342272	ENST00000481046		TCGA	LD	SARC	TCGA-WK-A8XX-01A	JPH2	chr20	42788258	-	RNF20	chr9	104297680	+
Frame-shit	ENST00000222284	ENST00000316843		TCGA	LD	SARC	TCGA-WK-A8XX-01A	TMEM147	chr19	36036718	+	LLGL1	chr17	18133255	+
5UTR-3CDS	ENST00000392204	ENST00000316843		TCGA	LD	SARC	TCGA-WK-A8XX-01A	TMEM147	chr19	36036718	+	LLGL1	chr17	18133255	+
Frame-shit	ENST00000392205	ENST00000316843		TCGA	LD	SARC	TCGA-WK-A8XX-01A	TMEM147	chr19	36036718	+	LLGL1	chr17	18133255	+
intron-3UTR	ENST00000577886	ENST00000437605		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000577886	ENST00000579428		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000577886	ENST00000583620		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-3UTR	ENST00000416464	ENST00000437605		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000416464	ENST00000579428		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000416464	ENST00000583620		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
5CDS-3UTR	ENST00000578237	ENST00000437605		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
5CDS-intron	ENST00000578237	ENST00000579428		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
5CDS-intron	ENST00000578237	ENST00000583620		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
5CDS-3UTR	ENST00000336708	ENST00000437605		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
5CDS-intron	ENST00000336708	ENST00000579428		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
5CDS-intron	ENST00000336708	ENST00000583620		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-3UTR	ENST00000579219	ENST00000437605		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000579219	ENST00000579428		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000579219	ENST00000583620		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-3UTR	ENST00000581224	ENST00000437605		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000581224	ENST00000579428		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
intron-intron	ENST00000581224	ENST00000583620		TCGA	LD	SARC	TCGA-WK-A8XZ-01A	TRIM16	chr17	15554405	-	TBC1D26	chr17	15647557	+
In-frame	ENST00000290649	ENST00000471389		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
In-frame	ENST00000290649	ENST00000394647		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
In-frame	ENST00000290649	ENST00000431610		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
In-frame	ENST00000290649	ENST00000460382		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
In-frame	ENST00000290649	ENST00000463855		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
5CDS-intron	ENST00000290649	ENST00000472835		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
intron-3CDS	ENST00000564283	ENST00000471389		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
intron-3CDS	ENST00000564283	ENST00000394647		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
intron-3CDS	ENST00000564283	ENST00000431610		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
intron-3CDS	ENST00000564283	ENST00000460382		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
intron-3CDS	ENST00000564283	ENST00000463855		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
intron-intron	ENST00000564283	ENST00000472835		TCGA	LD	SARC	TCGA-WP-A9GB-01A	AMFR	chr16	56401356	-	FTO	chr16	53967897	+
Frame-shit	ENST00000261811	ENST00000360772		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
Frame-shit	ENST00000261811	ENST00000359169		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
Frame-shit	ENST00000261811	ENST00000360304		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000418370		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000578202		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000354792		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000346322		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000583087		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000475616		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000261811	ENST00000510775		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-3CDS	ENST00000509789	ENST00000360772		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-3CDS	ENST00000509789	ENST00000359169		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-3CDS	ENST00000509789	ENST00000360304		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000418370		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000578202		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000354792		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000346322		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000583087		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000475616		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
intron-intron	ENST00000509789	ENST00000510775		TCGA	LD	SARC	TCGA-WP-A9GB-01A	CYSTM1	chr5	139574237	+	MYLK	chr3	123471385	-
5CDS-intron	ENST00000361937	ENST00000261811		TCGA	LD	SARC	TCGA-WP-A9GB-01A	INO80	chr15	41337103	-	CYSTM1	chr5	139661081	+
5CDS-3UTR	ENST00000361937	ENST00000509789		TCGA	LD	SARC	TCGA-WP-A9GB-01A	INO80	chr15	41337103	-	CYSTM1	chr5	139661081	+
5CDS-intron	ENST00000401393	ENST00000261811		TCGA	LD	SARC	TCGA-WP-A9GB-01A	INO80	chr15	41337103	-	CYSTM1	chr5	139661081	+
5CDS-3UTR	ENST00000401393	ENST00000509789		TCGA	LD	SARC	TCGA-WP-A9GB-01A	INO80	chr15	41337103	-	CYSTM1	chr5	139661081	+
intron-intron	ENST00000561244	ENST00000261811		TCGA	LD	SARC	TCGA-WP-A9GB-01A	INO80	chr15	41337103	-	CYSTM1	chr5	139661081	+
intron-3UTR	ENST00000561244	ENST00000509789		TCGA	LD	SARC	TCGA-WP-A9GB-01A	INO80	chr15	41337103	-	CYSTM1	chr5	139661081	+
intron-5UTR	ENST00000171887	ENST00000474063		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-intron	ENST00000171887	ENST00000423123		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-5UTR	ENST00000419504	ENST00000474063		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-intron	ENST00000419504	ENST00000423123		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-5UTR	ENST00000430930	ENST00000474063		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-intron	ENST00000430930	ENST00000423123		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-5UTR	ENST00000310858	ENST00000474063		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-intron	ENST00000310858	ENST00000423123		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-5UTR	ENST00000480665	ENST00000474063		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
intron-intron	ENST00000480665	ENST00000423123		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TNS1	chr2	218843488	-	DIRC3	chr2	218149586	-
5CDS-intron	ENST00000522793	ENST00000495013		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000522793	ENST00000258648		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000522793	ENST00000378586		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000231238	ENST00000495013		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000231238	ENST00000258648		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000231238	ENST00000378586		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
intron-intron	ENST00000520274	ENST00000495013		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
intron-intron	ENST00000520274	ENST00000258648		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
intron-5UTR	ENST00000520274	ENST00000378586		TCGA	LD	SARC	TCGA-WP-A9GB-01A	TTC1	chr5	159437865	+	MED4	chr13	48664554	-
In-frame	ENST00000326019	ENST00000379717		TCGA	LD	SARC	TCGA-X2-A95T-01A	SLC4A1AP	chr2	27898559	+	ZNF512	chr2	27838035	+
In-frame	ENST00000326019	ENST00000355467		TCGA	LD	SARC	TCGA-X2-A95T-01A	SLC4A1AP	chr2	27898559	+	ZNF512	chr2	27838035	+
5CDS-intron	ENST00000326019	ENST00000494548		TCGA	LD	SARC	TCGA-X2-A95T-01A	SLC4A1AP	chr2	27898559	+	ZNF512	chr2	27838035	+
5CDS-intron	ENST00000326019	ENST00000556601		TCGA	LD	SARC	TCGA-X2-A95T-01A	SLC4A1AP	chr2	27898559	+	ZNF512	chr2	27838035	+
5CDS-intron	ENST00000326019	ENST00000416005		TCGA	LD	SARC	TCGA-X2-A95T-01A	SLC4A1AP	chr2	27898559	+	ZNF512	chr2	27838035	+
5CDS-intron	ENST00000326019	ENST00000413371		TCGA	LD	SARC	TCGA-X2-A95T-01A	SLC4A1AP	chr2	27898559	+	ZNF512	chr2	27838035	+
intron-3CDS	ENST00000353139	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000353139	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000360679	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000360679	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000394406	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000394406	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000335166	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000335166	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000416895	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000416895	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000361253	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000361253	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000588142	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000588142	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000589665	ENST00000353265		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000589665	ENST00000470488		TCGA	LD	SARC	TCGA-X6-A7W8-01A	ACACA	chr17	35715942	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000341217	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000341217	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-intron	ENST00000341217	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000581407	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000581407	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-intron	ENST00000581407	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000582266	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000582266	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-intron	ENST00000582266	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000452648	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000452648	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-intron	ENST00000452648	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000582059	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000582059	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-intron	ENST00000582059	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000583953	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-3CDS	ENST00000583953	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
intron-intron	ENST00000583953	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000577682	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000577682	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-intron	ENST00000577682	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000583522	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000583522	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-intron	ENST00000583522	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000581381	ENST00000446526		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-3CDS	ENST00000581381	ENST00000324684		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
5UTR-intron	ENST00000581381	ENST00000588364		TCGA	LD	SARC	TCGA-X6-A7W8-01A	FAM222B	chr17	27169700	-	PRPSAP1	chr17	74309972	-
In-frame	ENST00000380958	ENST00000382374		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
5CDS-intron	ENST00000380958	ENST00000479790		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
In-frame	ENST00000399613	ENST00000382374		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
5CDS-intron	ENST00000399613	ENST00000479790		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
intron-3CDS	ENST00000282391	ENST00000382374		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
intron-intron	ENST00000282391	ENST00000479790		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
intron-3CDS	ENST00000483842	ENST00000382374		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
intron-intron	ENST00000483842	ENST00000479790		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PAN3	chr13	28794515	+	MICU2	chr13	22096789	-
5CDS-intron	ENST00000302079	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000302079	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000302079	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000302079	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000580640	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000580640	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000580640	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000580640	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000503781	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000503781	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000503781	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000503781	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
intron-intron	ENST00000383408	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
intron-intron	ENST00000383408	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
intron-intron	ENST00000383408	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
intron-intron	ENST00000383408	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000538948	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000538948	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000538948	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000538948	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000285141	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000285141	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000285141	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-intron	ENST00000285141	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5UTR-intron	ENST00000581680	ENST00000588752		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5UTR-intron	ENST00000581680	ENST00000589238		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5UTR-intron	ENST00000581680	ENST00000269159		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5UTR-intron	ENST00000581680	ENST00000588927		TCGA	LD	SARC	TCGA-X6-A7W8-01A	PIEZO2	chr18	10672687	-	IMPA2	chr18	12030342	+
5CDS-5UTR	ENST00000334464	ENST00000544392		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PDZD8	chr10	119078383	-	CACUL1	chr10	120433972	-
5CDS-intron	ENST00000334464	ENST00000369151		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PDZD8	chr10	119078383	-	CACUL1	chr10	120433972	-
5CDS-intron	ENST00000334464	ENST00000340214		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PDZD8	chr10	119078383	-	CACUL1	chr10	120433972	-
intron-5UTR	ENST00000482496	ENST00000544392		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PDZD8	chr10	119078383	-	CACUL1	chr10	120433972	-
intron-intron	ENST00000482496	ENST00000369151		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PDZD8	chr10	119078383	-	CACUL1	chr10	120433972	-
intron-intron	ENST00000482496	ENST00000340214		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PDZD8	chr10	119078383	-	CACUL1	chr10	120433972	-
Frame-shit	ENST00000361048	ENST00000368994		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
Frame-shit	ENST00000361048	ENST00000260723		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
5CDS-intron	ENST00000361048	ENST00000495370		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
Frame-shit	ENST00000369312	ENST00000368994		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
Frame-shit	ENST00000369312	ENST00000260723		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
5CDS-intron	ENST00000369312	ENST00000495370		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
Frame-shit	ENST00000369310	ENST00000368994		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
Frame-shit	ENST00000369310	ENST00000260723		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
5CDS-intron	ENST00000369310	ENST00000495370		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
intron-3CDS	ENST00000369309	ENST00000368994		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
intron-3CDS	ENST00000369309	ENST00000260723		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
intron-intron	ENST00000369309	ENST00000495370		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
intron-3CDS	ENST00000354462	ENST00000368994		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
intron-3CDS	ENST00000354462	ENST00000260723		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
intron-intron	ENST00000354462	ENST00000495370		TCGA	LD	SARC	TCGA-X6-A7WA-01A	PLEKHS1	chr10	115529659	+	BTBD16	chr10	124088995	+
5UTR-3CDS	ENST00000333430	ENST00000222005		TCGA	LD	SARC	TCGA-X6-A7WA-01A	S1PR5	chr19	10628074	-	CDC37	chr19	10506879	-
intron-3CDS	ENST00000439028	ENST00000222005		TCGA	LD	SARC	TCGA-X6-A7WA-01A	S1PR5	chr19	10628074	-	CDC37	chr19	10506879	-
5UTR-3CDS	ENST00000306006	ENST00000528446		TCGA	LD	SARC	TCGA-X6-A7WA-01A	ZNF239	chr10	44063347	-	ARMS2	chr10	124216423	+
5UTR-3CDS	ENST00000374446	ENST00000528446		TCGA	LD	SARC	TCGA-X6-A7WA-01A	ZNF239	chr10	44063347	-	ARMS2	chr10	124216423	+
5UTR-3CDS	ENST00000426961	ENST00000528446		TCGA	LD	SARC	TCGA-X6-A7WA-01A	ZNF239	chr10	44063347	-	ARMS2	chr10	124216423	+
intron-3CDS	ENST00000535642	ENST00000528446		TCGA	LD	SARC	TCGA-X6-A7WA-01A	ZNF239	chr10	44063347	-	ARMS2	chr10	124216423	+
intron-3CDS	ENST00000491188	ENST00000528446		TCGA	LD	SARC	TCGA-X6-A7WA-01A	ZNF239	chr10	44063347	-	ARMS2	chr10	124216423	+
5CDS-intron	ENST00000351293	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5CDS-intron	ENST00000322635	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5CDS-intron	ENST00000394762	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5CDS-intron	ENST00000423381	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5CDS-intron	ENST00000322680	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5CDS-intron	ENST00000305762	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5CDS-intron	ENST00000372765	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5UTR-intron	ENST00000472912	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
intron-intron	ENST00000444854	ENST00000584747		TCGA	LD	SARC	TCGA-X6-A7WB-01A	CAMK2G	chr10	75606983	-	BMS1P4	chr10	75464836	-
5UTR-5UTR	ENST00000314073	ENST00000356757		TCGA	LD	SARC	TCGA-X6-A7WB-01A	GLTSCR1L	chr6	42749839	+	TMEM217	chr6	37186817	-
5UTR-5UTR	ENST00000314073	ENST00000336655		TCGA	LD	SARC	TCGA-X6-A7WB-01A	GLTSCR1L	chr6	42749839	+	TMEM217	chr6	37186817	-
5UTR-intron	ENST00000314073	ENST00000497775		TCGA	LD	SARC	TCGA-X6-A7WB-01A	GLTSCR1L	chr6	42749839	+	TMEM217	chr6	37186817	-
intron-5UTR	ENST00000394168	ENST00000356757		TCGA	LD	SARC	TCGA-X6-A7WB-01A	GLTSCR1L	chr6	42749839	+	TMEM217	chr6	37186817	-
intron-5UTR	ENST00000394168	ENST00000336655		TCGA	LD	SARC	TCGA-X6-A7WB-01A	GLTSCR1L	chr6	42749839	+	TMEM217	chr6	37186817	-
intron-intron	ENST00000394168	ENST00000497775		TCGA	LD	SARC	TCGA-X6-A7WB-01A	GLTSCR1L	chr6	42749839	+	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000263674	ENST00000532481		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000527134		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000304716		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000526415		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-intron	ENST00000263674	ENST00000531855		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000393427		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000525409		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000533193		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
5CDS-5UTR	ENST00000263674	ENST00000525034		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000532481		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000527134		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000304716		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000526415		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-intron	ENST00000536170	ENST00000531855		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000393427		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000525409		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000533193		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
intron-5UTR	ENST00000536170	ENST00000525034		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ARHGEF17	chr11	73022875	+	AAMDC	chr11	77553525	+
3UTR-5UTR	ENST00000578868	ENST00000575301		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
3UTR-intron	ENST00000578868	ENST00000572893		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
3UTR-intron	ENST00000578868	ENST00000302926		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
5CDS-5UTR	ENST00000321337	ENST00000575301		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
5CDS-intron	ENST00000321337	ENST00000572893		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
5CDS-intron	ENST00000321337	ENST00000302926		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
5CDS-5UTR	ENST00000429205	ENST00000575301		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
5CDS-intron	ENST00000429205	ENST00000572893		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
5CDS-intron	ENST00000429205	ENST00000302926		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SENP3	chr17	7469081	+	NLGN2	chr17	7308353	+
In-frame	ENST00000517913	ENST00000353866		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000517913	ENST00000393915		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000517913	ENST00000432118		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000517913	ENST00000358715		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000435422	ENST00000353866		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000435422	ENST00000393915		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000435422	ENST00000432118		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000435422	ENST00000358715		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000447401	ENST00000353866		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000447401	ENST00000393915		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000447401	ENST00000432118		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000447401	ENST00000358715		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000337851	ENST00000353866		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
In-frame	ENST00000337851	ENST00000393915		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000337851	ENST00000432118		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
5CDS-intron	ENST00000337851	ENST00000358715		TCGA	LD	SARC	TCGA-X6-A7WC-01A	SGCD	chr5	156022061	+	HMMR	chr5	162890862	+
intron-3CDS	ENST00000457313	ENST00000334651		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
intron-intron	ENST00000457313	ENST00000464935		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
5UTR-3CDS	ENST00000392102	ENST00000334651		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
5UTR-intron	ENST00000392102	ENST00000464935		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
5UTR-3CDS	ENST00000442769	ENST00000334651		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
5UTR-intron	ENST00000442769	ENST00000464935		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
intron-3CDS	ENST00000258398	ENST00000334651		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
intron-intron	ENST00000258398	ENST00000464935		TCGA	LD	SARC	TCGA-X6-A7WC-01A	TTLL4	chr2	219575760	+	DHRSX	chrY	2159644	-
In-frame	ENST00000298139	ENST00000265107		TCGA	LD	SARC	TCGA-X6-A7WC-01A	WRN	chr8	30941295	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000298139	ENST00000504564		TCGA	LD	SARC	TCGA-X6-A7WC-01A	WRN	chr8	30941295	+	WDR70	chr5	37697757	+
5CDS-3UTR	ENST00000298139	ENST00000510699		TCGA	LD	SARC	TCGA-X6-A7WC-01A	WRN	chr8	30941295	+	WDR70	chr5	37697757	+
intron-5UTR	ENST00000426851	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000426851	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000426851	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000426851	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000426851	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000485111	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000485111	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000485111	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000485111	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000485111	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5UTR-5UTR	ENST00000420008	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5UTR-intron	ENST00000420008	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5UTR-intron	ENST00000420008	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5UTR-5UTR	ENST00000420008	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5UTR-intron	ENST00000420008	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5CDS-5UTR	ENST00000475153	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5CDS-intron	ENST00000475153	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5CDS-intron	ENST00000475153	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5CDS-5UTR	ENST00000475153	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
5CDS-intron	ENST00000475153	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000483892	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000483892	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000483892	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000483892	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000483892	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000491174	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000491174	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000491174	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000491174	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000491174	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000540950	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000540950	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000540950	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000540950	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000540950	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000335901	ENST00000360057		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000335901	ENST00000538212		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000335901	ENST00000549981		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-5UTR	ENST00000335901	ENST00000378099		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
intron-intron	ENST00000335901	ENST00000547966		TCGA	LD	SARC	TCGA-X6-A7WC-01A	ZNF398	chr7	148844858	+	TPK1	chr7	144532711	-
In-frame	ENST00000370620	ENST00000371429		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
In-frame	ENST00000370620	ENST00000540001		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000370620	ENST00000537333		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000370620	ENST00000234725		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-intron	ENST00000370620	ENST00000480952		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
In-frame	ENST00000370622	ENST00000371429		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
In-frame	ENST00000370622	ENST00000540001		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000370622	ENST00000537333		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000370622	ENST00000234725		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-intron	ENST00000370622	ENST00000480952		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
Frame-shit	ENST00000250617	ENST00000371429		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
Frame-shit	ENST00000250617	ENST00000540001		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000250617	ENST00000537333		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000250617	ENST00000234725		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-intron	ENST00000250617	ENST00000480952		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
In-frame	ENST00000535227	ENST00000371429		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
In-frame	ENST00000535227	ENST00000540001		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000535227	ENST00000537333		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-5UTR	ENST00000535227	ENST00000234725		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5CDS-intron	ENST00000535227	ENST00000480952		TCGA	LD	SARC	TCGA-X6-A8C2-01A	ARHGEF6	chrX	135814261	-	NDC1	chr1	54275419	-
5UTR-3CDS	ENST00000257749	ENST00000257336		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000257749	ENST00000448849		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000257749	ENST00000419638		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-intron	ENST00000257749	ENST00000491929		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-3CDS	ENST00000537989	ENST00000257336		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000537989	ENST00000448849		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000537989	ENST00000419638		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-intron	ENST00000537989	ENST00000491929		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-3CDS	ENST00000343122	ENST00000257336		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000343122	ENST00000448849		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000343122	ENST00000419638		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-intron	ENST00000343122	ENST00000491929		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-3CDS	ENST00000470301	ENST00000257336		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000470301	ENST00000448849		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-5UTR	ENST00000470301	ENST00000419638		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-intron	ENST00000470301	ENST00000491929		TCGA	LD	SARC	TCGA-X6-A8C2-01A	BACH2	chr6	90916288	-	BIVM	chr13	103468778	+
5UTR-3UTR	ENST00000560386	ENST00000322347		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5UTR-3UTR	ENST00000560386	ENST00000562233		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5UTR-3UTR	ENST00000560386	ENST00000567270		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5UTR-3UTR	ENST00000560386	ENST00000568783		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5UTR-3UTR	ENST00000560386	ENST00000568517		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5UTR-intron	ENST00000560386	ENST00000564811		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-3UTR	ENST00000256538	ENST00000322347		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-3UTR	ENST00000256538	ENST00000562233		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-3UTR	ENST00000256538	ENST00000567270		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-3UTR	ENST00000256538	ENST00000568783		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-3UTR	ENST00000256538	ENST00000568517		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-intron	ENST00000256538	ENST00000564811		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
intron-3UTR	ENST00000440392	ENST00000322347		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
intron-3UTR	ENST00000440392	ENST00000562233		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
intron-3UTR	ENST00000440392	ENST00000567270		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
intron-3UTR	ENST00000440392	ENST00000568783		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
intron-3UTR	ENST00000440392	ENST00000568517		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
intron-intron	ENST00000440392	ENST00000564811		TCGA	LD	SARC	TCGA-X6-A8C2-01A	DPH6	chr15	35703036	-	COX5A	chr15	75212783	-
5CDS-5UTR	ENST00000535193	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000535193	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000535193	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000543771	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000543771	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000543771	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000381306	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000381306	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000381306	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000381309	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000381309	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000381309	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000442236	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000442236	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000442236	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000489243	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000489243	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000489243	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000536108	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000536108	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000536108	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000428870	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000428870	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
5CDS-5UTR	ENST00000428870	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000401787	ENST00000275605		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000401787	ENST00000395471		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
intron-5UTR	ENST00000401787	ENST00000459834		TCGA	LD	SARC	TCGA-X6-A8C2-01A	KDM4C	chr9	7049200	+	PSPH	chr7	56101796	-
In-frame	ENST00000379380	ENST00000230671		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
In-frame	ENST00000379380	ENST00000524041		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
In-frame	ENST00000510516	ENST00000230671		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
In-frame	ENST00000510516	ENST00000524041		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
In-frame	ENST00000507584	ENST00000230671		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
In-frame	ENST00000507584	ENST00000524041		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
intron-3CDS	ENST00000521227	ENST00000230671		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
intron-3CDS	ENST00000521227	ENST00000524041		TCGA	LD	SARC	TCGA-X6-A8C2-01A	LYRM7	chr5	130506731	+	SLC6A7	chr5	149574291	+
5UTR-3CDS	ENST00000376007	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
5UTR-3CDS	ENST00000376007	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
5UTR-3CDS	ENST00000376007	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
3UTR-3CDS	ENST00000469577	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
3UTR-3CDS	ENST00000469577	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
3UTR-3CDS	ENST00000469577	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
5UTR-3CDS	ENST00000376033	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
5UTR-3CDS	ENST00000376033	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
5UTR-3CDS	ENST00000376033	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549037	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549037	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549037	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000551794	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000551794	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000551794	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000435971	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000435971	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000435971	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000485195	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000485195	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000485195	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000428775	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000428775	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000428775	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550674	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550674	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550674	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000548373	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000548373	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000548373	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000439762	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000439762	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000439762	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000416335	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000416335	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000416335	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000473169	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000473169	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000473169	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550109	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550109	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550109	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550609	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550609	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000550609	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000454306	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000454306	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000454306	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000468994	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000468994	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000468994	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000432252	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000432252	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000432252	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000551341	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000551341	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000551341	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547457	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547457	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547457	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000383464	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000383464	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000383464	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000470109	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000470109	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000470109	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000383455	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000383455	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000383455	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547056	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547056	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547056	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549383	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549383	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549383	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000458561	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000458561	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000458561	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000466607	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000466607	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000466607	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000414956	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000414956	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000414956	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547669	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547669	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000547669	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549768	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549768	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000549768	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000430737	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000430737	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000430737	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000484613	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000484613	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000484613	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000422962	ENST00000373122		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000422962	ENST00000373113		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
intron-3CDS	ENST00000422962	ENST00000338469		TCGA	LD	SARC	TCGA-X6-A8C2-01A	PRRC2A	chr6	31588635	+	TREM2	chr6	41127620	-
In-frame	ENST00000243347	ENST00000392857		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000243347	ENST00000392858		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000243347	ENST00000535373		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000243347	ENST00000536575		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000243347	ENST00000540442		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000243347	ENST00000264169		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000243347	ENST00000542387		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
5CDS-intron	ENST00000243347	ENST00000488761		TCGA	LD	SARC	TCGA-X6-A8C2-01A	TNFAIP6	chr2	152214274	+	ORC4	chr2	148695962	-
In-frame	ENST00000064778	ENST00000263650		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000064778	ENST00000389989		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000064778	ENST00000525498		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000064778	ENST00000542243		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000064778	ENST00000348039		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000064778	ENST00000478260		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000064778	ENST00000528124		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000450446	ENST00000263650		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000450446	ENST00000389989		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000450446	ENST00000525498		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000450446	ENST00000542243		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000450446	ENST00000348039		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000450446	ENST00000478260		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000450446	ENST00000528124		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000356467	ENST00000263650		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000356467	ENST00000389989		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
In-frame	ENST00000356467	ENST00000525498		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000356467	ENST00000542243		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000356467	ENST00000348039		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000356467	ENST00000478260		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
5CDS-intron	ENST00000356467	ENST00000528124		TCGA	LD	SARC	TCGA-X6-A8C3-01A	FAM168A	chr11	73179450	-	OSBPL5	chr11	3140861	-
intron-3CDS	ENST00000339307	ENST00000392415		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3CDS	ENST00000339307	ENST00000410062		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3CDS	ENST00000339307	ENST00000602710		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3UTR	ENST00000339307	ENST00000602837		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3UTR	ENST00000339307	ENST00000602959		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-intron	ENST00000339307	ENST00000602475		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-intron	ENST00000339307	ENST00000602632		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
In-frame	ENST00000397033	ENST00000392415		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
In-frame	ENST00000397033	ENST00000410062		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
In-frame	ENST00000397033	ENST00000602710		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
5CDS-3UTR	ENST00000397033	ENST00000602837		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
5CDS-3UTR	ENST00000397033	ENST00000602959		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
5CDS-intron	ENST00000397033	ENST00000602475		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
5CDS-intron	ENST00000397033	ENST00000602632		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3CDS	ENST00000478440	ENST00000392415		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3CDS	ENST00000478440	ENST00000410062		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3CDS	ENST00000478440	ENST00000602710		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3UTR	ENST00000478440	ENST00000602837		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3UTR	ENST00000478440	ENST00000602959		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-intron	ENST00000478440	ENST00000602475		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-intron	ENST00000478440	ENST00000602632		TCGA	LD	SARC	TCGA-X6-A8C3-01A	ITGA4	chr2	182347378	+	UBE2E3	chr2	181925392	+
intron-3CDS	ENST00000450873	ENST00000310396		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000450873	ENST00000450913		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-intron	ENST00000450873	ENST00000423795		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000450873	ENST00000495036		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000450873	ENST00000340646		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000284957	ENST00000310396		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000284957	ENST00000450913		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-intron	ENST00000284957	ENST00000423795		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000284957	ENST00000495036		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000284957	ENST00000340646		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000439720	ENST00000310396		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000439720	ENST00000450913		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-intron	ENST00000439720	ENST00000423795		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000439720	ENST00000495036		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000439720	ENST00000340646		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000437078	ENST00000310396		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000437078	ENST00000450913		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-intron	ENST00000437078	ENST00000423795		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000437078	ENST00000495036		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000437078	ENST00000340646		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000484547	ENST00000310396		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3CDS	ENST00000484547	ENST00000450913		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-intron	ENST00000484547	ENST00000423795		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000484547	ENST00000495036		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
intron-3UTR	ENST00000484547	ENST00000340646		TCGA	LD	SARC	TCGA-X6-A8C3-01A	RABGEF1	chr7	66177211	+	CPED1	chr7	120655719	+
5CDS-5UTR	ENST00000251241	ENST00000378449		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000251241	ENST00000433649		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000251241	ENST00000268876		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000251241	ENST00000394570		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000251241	ENST00000591048		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000451169	ENST00000378449		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000451169	ENST00000433649		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000451169	ENST00000268876		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000451169	ENST00000394570		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000451169	ENST00000591048		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000425628	ENST00000378449		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000425628	ENST00000433649		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000425628	ENST00000268876		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000425628	ENST00000394570		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-5UTR	ENST00000425628	ENST00000591048		TCGA	LD	SARC	TCGA-X6-A8C4-01A	DHX40	chr17	57665414	+	UNC45B	chr17	33475280	+
5CDS-intron	ENST00000261263	ENST00000552983		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
5CDS-intron	ENST00000261263	ENST00000332896		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
5CDS-intron	ENST00000261263	ENST00000552033		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
5CDS-intron	ENST00000261263	ENST00000548483		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
5CDS-intron	ENST00000261263	ENST00000542893		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
5CDS-intron	ENST00000261263	ENST00000541813		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
5CDS-intron	ENST00000261263	ENST00000548330		TCGA	LD	SARC	TCGA-X6-A8C4-01A	RAB21	chr12	72176438	+	CRADD	chr12	94253095	+
intron-5UTR	ENST00000413465	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000413465	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000413465	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000359597	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000359597	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000359597	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000269305	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000269305	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000269305	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000455263	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000455263	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000455263	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000420246	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000420246	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000420246	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000445888	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000445888	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
5UTR-5UTR	ENST00000445888	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000574684	ENST00000532183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000574684	ENST00000245503		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
intron-5UTR	ENST00000574684	ENST00000397183		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TP53	chr17	7590695	-	MYH2	chr17	10452734	-
In-frame	ENST00000248846	ENST00000282111		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TUBGCP6	chr22	50667833	-	TCF7L1	chr2	85529607	+
5CDS-intron	ENST00000248846	ENST00000494519		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TUBGCP6	chr22	50667833	-	TCF7L1	chr2	85529607	+
intron-3CDS	ENST00000491449	ENST00000282111		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TUBGCP6	chr22	50667833	-	TCF7L1	chr2	85529607	+
intron-intron	ENST00000491449	ENST00000494519		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TUBGCP6	chr22	50667833	-	TCF7L1	chr2	85529607	+
In-frame	ENST00000439308	ENST00000282111		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TUBGCP6	chr22	50667833	-	TCF7L1	chr2	85529607	+
5CDS-intron	ENST00000439308	ENST00000494519		TCGA	LD	SARC	TCGA-X6-A8C4-01A	TUBGCP6	chr22	50667833	-	TCF7L1	chr2	85529607	+
5CDS-5UTR	ENST00000344938	ENST00000502630		TCGA	LD	SARC	TCGA-X6-A8C5-01A	EVC2	chr4	5664834	-	TMED11P	chr4	1110198	-
5CDS-5UTR	ENST00000344408	ENST00000502630		TCGA	LD	SARC	TCGA-X6-A8C5-01A	EVC2	chr4	5664834	-	TMED11P	chr4	1110198	-
5CDS-5UTR	ENST00000310917	ENST00000502630		TCGA	LD	SARC	TCGA-X6-A8C5-01A	EVC2	chr4	5664834	-	TMED11P	chr4	1110198	-
In-frame	ENST00000382062	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000382062	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000382062	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000382062	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
3UTR-3CDS	ENST00000487365	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
3UTR-3CDS	ENST00000487365	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
3UTR-3CDS	ENST00000487365	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
3UTR-5UTR	ENST00000487365	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
Frame-shit	ENST00000236693	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
Frame-shit	ENST00000236693	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
Frame-shit	ENST00000236693	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000236693	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000349077	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000349077	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000349077	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000349077	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000418971	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000418971	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
In-frame	ENST00000418971	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000418971	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000403096	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000403096	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000403096	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-5UTR	ENST00000403096	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000402922	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000402922	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000402922	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-5UTR	ENST00000402922	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000402794	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000402794	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000402794	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-5UTR	ENST00000402794	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000404205	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000404205	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-3CDS	ENST00000404205	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
intron-5UTR	ENST00000404205	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	COLEC11	chr2	3652060	+	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000443824	ENST00000397180		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000443824	ENST00000457380		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000443824	ENST00000352078		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-3UTR	ENST00000443824	ENST00000469346		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000443824	ENST00000336169		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000359276	ENST00000397180		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000359276	ENST00000457380		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000359276	ENST00000352078		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-3UTR	ENST00000359276	ENST00000469346		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000359276	ENST00000336169		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000380241	ENST00000397180		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000380241	ENST00000457380		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000380241	ENST00000352078		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-3UTR	ENST00000380241	ENST00000469346		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
5CDS-5UTR	ENST00000380241	ENST00000336169		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
intron-5UTR	ENST00000483053	ENST00000397180		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
intron-5UTR	ENST00000483053	ENST00000457380		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
intron-5UTR	ENST00000483053	ENST00000352078		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
intron-3UTR	ENST00000483053	ENST00000469346		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
intron-5UTR	ENST00000483053	ENST00000336169		TCGA	LD	SARC	TCGA-X6-A8C6-01A	CTPS2	chrX	16716361	-	RGN	chrX	46940527	+
Frame-shit	ENST00000256545	ENST00000266557		TCGA	LD	SARC	TCGA-X6-A8C6-01A	EMC7	chr15	34388096	-	CD27	chr12	6554590	+
5CDS-3UTR	ENST00000256545	ENST00000541233		TCGA	LD	SARC	TCGA-X6-A8C6-01A	EMC7	chr15	34388096	-	CD27	chr12	6554590	+
intron-3CDS	ENST00000532113	ENST00000266557		TCGA	LD	SARC	TCGA-X6-A8C6-01A	EMC7	chr15	34388096	-	CD27	chr12	6554590	+
intron-3UTR	ENST00000532113	ENST00000541233		TCGA	LD	SARC	TCGA-X6-A8C6-01A	EMC7	chr15	34388096	-	CD27	chr12	6554590	+
In-frame	ENST00000418530	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
In-frame	ENST00000418530	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
In-frame	ENST00000418530	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000418530	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000256707	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000256707	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000256707	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000256707	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000427284	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000427284	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000427284	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000427284	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000473731	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000473731	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
Frame-shit	ENST00000473731	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
5CDS-5UTR	ENST00000473731	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-3CDS	ENST00000319688	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-3CDS	ENST00000319688	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-3CDS	ENST00000319688	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-5UTR	ENST00000319688	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-3CDS	ENST00000436566	ENST00000314787		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-3CDS	ENST00000436566	ENST00000426190		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-3CDS	ENST00000436566	ENST00000519088		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
intron-5UTR	ENST00000436566	ENST00000520018		TCGA	LD	SARC	TCGA-X6-A8C6-01A	KIDINS220	chr2	8890242	-	PINX1	chr8	10692285	-
5CDS-intron	ENST00000367723	ENST00000400967		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000367723	ENST00000235453		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000367723	ENST00000367396		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000367723	ENST00000477581		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-intron	ENST00000608151	ENST00000400967		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000608151	ENST00000235453		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000608151	ENST00000367396		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000608151	ENST00000477581		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-intron	ENST00000610051	ENST00000400967		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000610051	ENST00000235453		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000610051	ENST00000367396		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000610051	ENST00000477581		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-intron	ENST00000263688	ENST00000400967		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000263688	ENST00000235453		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000263688	ENST00000367396		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
5CDS-5UTR	ENST00000263688	ENST00000477581		TCGA	LD	SARC	TCGA-X6-A8C6-01A	SUCO	chr1	172547529	+	DENND1B	chr1	197742062	-
intron-3CDS	ENST00000413465	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000413465	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-intron	ENST00000413465	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-intron	ENST00000413465	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000359597	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000359597	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-intron	ENST00000359597	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-intron	ENST00000359597	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000269305	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000269305	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000269305	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000269305	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000455263	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000455263	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000455263	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000455263	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000420246	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000420246	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000420246	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000420246	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000445888	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-3CDS	ENST00000445888	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000445888	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
5UTR-intron	ENST00000445888	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000574684	ENST00000572933		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000574684	ENST00000389173		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-intron	ENST00000574684	ENST00000570791		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-intron	ENST00000574684	ENST00000082259		TCGA	LD	SARC	TCGA-X6-A8C6-01A	TP53	chr17	7590695	-	DNAH2	chr17	7733618	+
intron-3CDS	ENST00000405402	ENST00000217407		TCGA	LD	SARC	TCGA-X6-A8C7-01A	GSE1	chr16	85205413	+	LBP	chr20	37005267	+
intron-3CDS	ENST00000253458	ENST00000217407		TCGA	LD	SARC	TCGA-X6-A8C7-01A	GSE1	chr16	85205413	+	LBP	chr20	37005267	+
intron-3CDS	ENST00000393243	ENST00000217407		TCGA	LD	SARC	TCGA-X6-A8C7-01A	GSE1	chr16	85205413	+	LBP	chr20	37005267	+
intron-3CDS	ENST00000471070	ENST00000217407		TCGA	LD	SARC	TCGA-X6-A8C7-01A	GSE1	chr16	85205413	+	LBP	chr20	37005267	+
5CDS-5UTR	ENST00000268459	ENST00000330205		TCGA	LD	SARC	TCGA-X9-A971-01A	NKD1	chr16	50583466	+	SPATC1L	chr21	47588572	-
5CDS-5UTR	ENST00000268459	ENST00000291672		TCGA	LD	SARC	TCGA-X9-A971-01A	NKD1	chr16	50583466	+	SPATC1L	chr21	47588572	-
3UTR-5UTR	ENST00000564336	ENST00000330205		TCGA	LD	SARC	TCGA-X9-A971-01A	NKD1	chr16	50583466	+	SPATC1L	chr21	47588572	-
3UTR-5UTR	ENST00000564336	ENST00000291672		TCGA	LD	SARC	TCGA-X9-A971-01A	NKD1	chr16	50583466	+	SPATC1L	chr21	47588572	-
5UTR-3CDS	ENST00000560626	ENST00000555220		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-3CDS	ENST00000560626	ENST00000555424		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-intron	ENST00000560626	ENST00000608382		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-intron	ENST00000560626	ENST00000394715		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-3CDS	ENST00000558305	ENST00000555220		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-3CDS	ENST00000558305	ENST00000555424		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-intron	ENST00000558305	ENST00000608382		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-intron	ENST00000558305	ENST00000394715		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-3CDS	ENST00000567337	ENST00000555220		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-3CDS	ENST00000567337	ENST00000555424		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-intron	ENST00000567337	ENST00000608382		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
5UTR-intron	ENST00000567337	ENST00000394715		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
intron-3CDS	ENST00000312493	ENST00000555220		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
intron-3CDS	ENST00000312493	ENST00000555424		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
intron-intron	ENST00000312493	ENST00000608382		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
intron-intron	ENST00000312493	ENST00000394715		TCGA	LD	SARC	TCGA-X9-A971-01A	PEAK1	chr15	77712348	-	ZBTB25	chr14	64916356	-
Frame-shit	ENST00000300527	ENST00000368884		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000300527	ENST00000368881		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
5CDS-intron	ENST00000300527	ENST00000469786		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000310645	ENST00000368884		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000310645	ENST00000368881		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
5CDS-intron	ENST00000310645	ENST00000469786		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000357838	ENST00000368884		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000357838	ENST00000368881		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
5CDS-intron	ENST00000357838	ENST00000469786		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000409416	ENST00000368884		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000409416	ENST00000368881		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
5CDS-intron	ENST00000409416	ENST00000469786		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000397763	ENST00000368884		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
Frame-shit	ENST00000397763	ENST00000368881		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
5CDS-intron	ENST00000397763	ENST00000469786		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
intron-3CDS	ENST00000460886	ENST00000368884		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
intron-3CDS	ENST00000460886	ENST00000368881		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
intron-intron	ENST00000460886	ENST00000469786		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	COL6A2	chr21	47542062	+	PSMD4	chr1	151239667	+
3UTR-3CDS	ENST00000565624	ENST00000225964		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	ZNF469	chr16	88506499	+	COL1A1	chr17	48274394	-
3UTR-3CDS	ENST00000437464	ENST00000225964		TCGA	LD	SARC	TCGA-Z4-A8JB-01A	ZNF469	chr16	88506499	+	COL1A1	chr17	48274394	-
5UTR-3CDS	ENST00000547303	ENST00000254108		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000547303	ENST00000380244		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000547303	ENST00000568685		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3UTR	ENST00000547303	ENST00000474990		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000551116	ENST00000254108		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000551116	ENST00000380244		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000551116	ENST00000568685		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3UTR	ENST00000551116	ENST00000474990		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000346473	ENST00000254108		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000346473	ENST00000380244		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000346473	ENST00000568685		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3UTR	ENST00000346473	ENST00000474990		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000552740	ENST00000254108		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000552740	ENST00000380244		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3CDS	ENST00000552740	ENST00000568685		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
5UTR-3UTR	ENST00000552740	ENST00000474990		TCGA	LD	SARC	TCGA-Z4-A9VC-01A	DDIT3	chr12	57914201	-	FUS	chr16	31200986	+
In-frame	ENST00000415083	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000415083	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000415083	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542420	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542420	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000542743	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000542743	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
Frame-shit	ENST00000539849	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000539849	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000269137	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000269137	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000545952	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
5CDS-5UTR	ENST00000545952	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000336777		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-3CDS	ENST00000585241	ENST00000337502		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
intron-5UTR	ENST00000585241	ENST00000476392		TCGA	LD	SARC	TCGA-Z4-AAPF-01A	SS18	chr18	23612363	-	SSX2	chrX	52729628	-
In-frame	ENST00000355413	ENST00000288602		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
Frame-shit	ENST00000473247	ENST00000288602		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
3UTR-3CDS	ENST00000495028	ENST00000288602		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
In-frame	ENST00000535825	ENST00000288602		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
In-frame	ENST00000492693	ENST00000288602		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
Frame-shit	ENST00000360359	ENST00000338257		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANKS1A	chr6	34857376	+	MYO1F	chr19	8609348	-
5CDS-intron	ENST00000360359	ENST00000595046		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANKS1A	chr6	34857376	+	MYO1F	chr19	8609348	-
Frame-shit	ENST00000535627	ENST00000338257		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANKS1A	chr6	34857376	+	MYO1F	chr19	8609348	-
5CDS-intron	ENST00000535627	ENST00000595046		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANKS1A	chr6	34857376	+	MYO1F	chr19	8609348	-
intron-3CDS	ENST00000470698	ENST00000338257		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANKS1A	chr6	34857376	+	MYO1F	chr19	8609348	-
intron-intron	ENST00000470698	ENST00000595046		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANKS1A	chr6	34857376	+	MYO1F	chr19	8609348	-
Frame-shit	ENST00000354293	ENST00000316763		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000354293	ENST00000377011		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000354293	ENST00000599538		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000354293	ENST00000443401		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000354293	ENST00000601341		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000354293	ENST00000594948		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000601912		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000594092		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000593919		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000354293	ENST00000424804		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-3CDS	ENST00000600199	ENST00000316763		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-3CDS	ENST00000600199	ENST00000377011		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-3CDS	ENST00000600199	ENST00000599538		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-3CDS	ENST00000600199	ENST00000443401		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-3CDS	ENST00000600199	ENST00000601341		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-3CDS	ENST00000600199	ENST00000594948		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-intron	ENST00000600199	ENST00000601912		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-intron	ENST00000600199	ENST00000594092		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-intron	ENST00000600199	ENST00000593919		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
3UTR-intron	ENST00000600199	ENST00000424804		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000359032	ENST00000316763		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000359032	ENST00000377011		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000359032	ENST00000599538		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000359032	ENST00000443401		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000359032	ENST00000601341		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
Frame-shit	ENST00000359032	ENST00000594948		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000601912		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000594092		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000593919		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
5CDS-intron	ENST00000359032	ENST00000424804		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	AP2A1	chr19	50295321	+	VRK3	chr19	50482499	-
intron-3CDS	ENST00000359373	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000359373	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000359373	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-3CDS	ENST00000495878	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000495878	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000495878	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-3CDS	ENST00000455638	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000455638	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000455638	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-3CDS	ENST00000393605	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000393605	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000393605	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-3CDS	ENST00000334211	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-intron	ENST00000334211	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-intron	ENST00000334211	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-3CDS	ENST00000393609	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000393609	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
intron-intron	ENST00000393609	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-3CDS	ENST00000426523	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-intron	ENST00000426523	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-intron	ENST00000426523	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-3CDS	ENST00000429686	ENST00000375735		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-intron	ENST00000429686	ENST00000334267		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
5UTR-intron	ENST00000429686	ENST00000398093		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ARAP1	chr11	72432895	-	DYNC2H1	chr11	103062246	+
Frame-shit	ENST00000420843	ENST00000529689		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
Frame-shit	ENST00000420843	ENST00000455220		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-intron	ENST00000420843	ENST00000525504		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000420843	ENST00000525503		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000420843	ENST00000529611		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000420843	ENST00000529073		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
Frame-shit	ENST00000393505	ENST00000529689		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
Frame-shit	ENST00000393505	ENST00000455220		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-intron	ENST00000393505	ENST00000525504		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000393505	ENST00000525503		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000393505	ENST00000529611		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000393505	ENST00000529073		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
Frame-shit	ENST00000360025	ENST00000529689		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
Frame-shit	ENST00000360025	ENST00000455220		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-intron	ENST00000360025	ENST00000525504		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000360025	ENST00000525503		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000360025	ENST00000529611		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
5CDS-5UTR	ENST00000360025	ENST00000529073		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ARRB1	chr11	74987883	-	CCDC90B	chr11	82991303	-
3UTR-3CDS	ENST00000497753	ENST00000271971		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
3UTR-3CDS	ENST00000497753	ENST00000354537		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
3UTR-3CDS	ENST00000497753	ENST00000366666		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
3UTR-intron	ENST00000497753	ENST00000480004		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
Frame-shit	ENST00000310256	ENST00000271971		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
Frame-shit	ENST00000310256	ENST00000354537		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
Frame-shit	ENST00000310256	ENST00000366666		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
5CDS-intron	ENST00000310256	ENST00000480004		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
Frame-shit	ENST00000366658	ENST00000271971		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
Frame-shit	ENST00000366658	ENST00000354537		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
Frame-shit	ENST00000366658	ENST00000366666		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
5CDS-intron	ENST00000366658	ENST00000480004		TCGA	RV	SKCM	TCGA-ER-A19E-06A	ARV1	chr1	231126009	+	CAPN9	chr1	230914719	+
5UTR-3CDS	ENST00000415149	ENST00000398637		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000415149	ENST00000549049		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000415149	ENST00000439706		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000415149	ENST00000546893		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000415149	ENST00000549633		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000415149	ENST00000552197		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000402543	ENST00000398637		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000402543	ENST00000549049		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000402543	ENST00000439706		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000402543	ENST00000546893		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000402543	ENST00000549633		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000402543	ENST00000552197		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000325805	ENST00000398637		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000325805	ENST00000549049		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000325805	ENST00000439706		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000325805	ENST00000546893		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000325805	ENST00000549633		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000325805	ENST00000552197		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000416476	ENST00000398637		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000416476	ENST00000549049		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000416476	ENST00000439706		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-3CDS	ENST00000416476	ENST00000546893		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000416476	ENST00000549633		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-5UTR	ENST00000416476	ENST00000552197		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000406780	ENST00000398637		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000406780	ENST00000549049		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000406780	ENST00000439706		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000406780	ENST00000546893		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-5UTR	ENST00000406780	ENST00000549633		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-5UTR	ENST00000406780	ENST00000552197		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000473542	ENST00000398637		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000473542	ENST00000549049		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000473542	ENST00000439706		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-3CDS	ENST00000473542	ENST00000546893		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-5UTR	ENST00000473542	ENST00000549633		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
intron-5UTR	ENST00000473542	ENST00000552197		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	BBX	chr3	107241954	+	SLC38A1	chr12	46602910	-
5UTR-intron	ENST00000486478	ENST00000474476		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5UTR-intron	ENST00000486478	ENST00000371218		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5UTR-intron	ENST00000486478	ENST00000303721		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5UTR-intron	ENST00000486478	ENST00000371212		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5UTR-intron	ENST00000486478	ENST00000371210		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000450089	ENST00000474476		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000450089	ENST00000371218		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000450089	ENST00000303721		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000450089	ENST00000371212		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000450089	ENST00000371210		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371201	ENST00000474476		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371201	ENST00000371218		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371201	ENST00000303721		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371201	ENST00000371212		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371201	ENST00000371210		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395552	ENST00000474476		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395552	ENST00000371218		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395552	ENST00000303721		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395552	ENST00000371212		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395552	ENST00000371210		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	C1orf87	chr1	60463281	-	FGGY	chr1	60223603	+
intron-3CDS	ENST00000531028	ENST00000340360		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
intron-3CDS	ENST00000531028	ENST00000321448		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
intron-3CDS	ENST00000531028	ENST00000527087		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
intron-intron	ENST00000531028	ENST00000533598		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000278559	ENST00000340360		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000278559	ENST00000321448		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
In-frame	ENST00000278559	ENST00000527087		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
5CDS-intron	ENST00000278559	ENST00000533598		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000529629	ENST00000340360		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000529629	ENST00000321448		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
In-frame	ENST00000529629	ENST00000527087		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
5CDS-intron	ENST00000529629	ENST00000533598		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000456580	ENST00000340360		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000456580	ENST00000321448		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
In-frame	ENST00000456580	ENST00000527087		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
5CDS-intron	ENST00000456580	ENST00000533598		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	CAPN5	chr11	76804859	+	XRRA1	chr11	74554498	-
Frame-shit	ENST00000381858	ENST00000380672		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000381858	ENST00000380667		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000381858	ENST00000545497		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000381858	ENST00000380666		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000381858	ENST00000471301		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000381854	ENST00000380672		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
Frame-shit	ENST00000381854	ENST00000380667		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000381854	ENST00000545497		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000381854	ENST00000380666		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5CDS-intron	ENST00000381854	ENST00000471301		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
intron-3CDS	ENST00000479095	ENST00000380672		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
intron-3CDS	ENST00000479095	ENST00000380667		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
intron-intron	ENST00000479095	ENST00000545497		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
intron-intron	ENST00000479095	ENST00000380666		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
intron-intron	ENST00000479095	ENST00000471301		TCGA	RV	SKCM	TCGA-GN-A4U5-01A	CDC37L1	chr9	4688606	+	BNC2	chr9	16738483	-
5UTR-3CDS	ENST00000429964	ENST00000331830		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CDK18	chr1	205473924	+	CNTN2	chr1	205027049	+
5UTR-3CDS	ENST00000506784	ENST00000331830		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CDK18	chr1	205473924	+	CNTN2	chr1	205027049	+
5UTR-3CDS	ENST00000360066	ENST00000331830		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CDK18	chr1	205473924	+	CNTN2	chr1	205027049	+
intron-3CDS	ENST00000509056	ENST00000331830		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CDK18	chr1	205473924	+	CNTN2	chr1	205027049	+
In-frame	ENST00000215980	ENST00000310398		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000215980	ENST00000402239		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000404067	ENST00000310398		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000404067	ENST00000402239		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000402338	ENST00000310398		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000402338	ENST00000402239		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000407253	ENST00000310398		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
In-frame	ENST00000407253	ENST00000402239		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
Frame-shit	ENST00000402420	ENST00000310398		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
Frame-shit	ENST00000402420	ENST00000402239		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
intron-3CDS	ENST00000472374	ENST00000310398		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
intron-3CDS	ENST00000472374	ENST00000402239		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	CENPM	chr22	42341229	-	AGR3	chr7	16901684	-
5CDS-intron	ENST00000265689	ENST00000449833		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000265689	ENST00000409161		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000265689	ENST00000423696		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000265689	ENST00000338508		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000265689	ENST00000409530		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000265689	ENST00000449116		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000265689	ENST00000357171		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-5UTR	ENST00000265689	ENST00000468619		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000449833		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000409161		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000423696		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000338508		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000409530		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000449116		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-intron	ENST00000533728	ENST00000357171		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
intron-5UTR	ENST00000533728	ENST00000468619		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000449833		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000409161		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000423696		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000338508		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000409530		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000449116		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-intron	ENST00000356135	ENST00000357171		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
5CDS-5UTR	ENST00000356135	ENST00000468619		TCGA	RV	SKCM	TCGA-EB-A82B-01A	CHKA	chr11	67888295	-	SHANK2	chr11	70666787	-
In-frame	ENST00000361545	ENST00000376896		TCGA	RV	SKCM	TCGA-EE-A29L-06A	CLIP2	chr7	73731997	+	RORB	chr9	77245198	+
In-frame	ENST00000361545	ENST00000396204		TCGA	RV	SKCM	TCGA-EE-A29L-06A	CLIP2	chr7	73731997	+	RORB	chr9	77245198	+
In-frame	ENST00000223398	ENST00000376896		TCGA	RV	SKCM	TCGA-EE-A29L-06A	CLIP2	chr7	73731997	+	RORB	chr9	77245198	+
In-frame	ENST00000223398	ENST00000396204		TCGA	RV	SKCM	TCGA-EE-A29L-06A	CLIP2	chr7	73731997	+	RORB	chr9	77245198	+
In-frame	ENST00000395060	ENST00000376896		TCGA	RV	SKCM	TCGA-EE-A29L-06A	CLIP2	chr7	73731997	+	RORB	chr9	77245198	+
In-frame	ENST00000395060	ENST00000396204		TCGA	RV	SKCM	TCGA-EE-A29L-06A	CLIP2	chr7	73731997	+	RORB	chr9	77245198	+
In-frame	ENST00000370206	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
In-frame	ENST00000370206	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
5CDS-3UTR	ENST00000370206	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
In-frame	ENST00000538964	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
In-frame	ENST00000538964	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
5CDS-3UTR	ENST00000538964	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
In-frame	ENST00000394202	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
In-frame	ENST00000394202	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
5CDS-3UTR	ENST00000394202	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
intron-3CDS	ENST00000545882	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
intron-3CDS	ENST00000545882	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
intron-3UTR	ENST00000545882	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
intron-3CDS	ENST00000487539	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
intron-3CDS	ENST00000487539	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
intron-3UTR	ENST00000487539	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A551-01A	CNN3	chr1	95392394	-	CACHD1	chr1	65047839	+
Frame-shit	ENST00000340533	ENST00000442544		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000340533	ENST00000412726		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000340533	ENST00000581580		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
5CDS-intron	ENST00000340533	ENST00000580146		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000494131	ENST00000442544		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000494131	ENST00000412726		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000494131	ENST00000581580		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
5CDS-intron	ENST00000494131	ENST00000580146		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000397914	ENST00000442544		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000397914	ENST00000412726		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
Frame-shit	ENST00000397914	ENST00000581580		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
5CDS-intron	ENST00000397914	ENST00000580146		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000299438	ENST00000442544		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000299438	ENST00000412726		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000299438	ENST00000581580		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-intron	ENST00000299438	ENST00000580146		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000579064	ENST00000442544		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000579064	ENST00000412726		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000579064	ENST00000581580		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-intron	ENST00000579064	ENST00000580146		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CYB5A	chr18	71958982	-	DCC	chr18	50848417	+
intron-3CDS	ENST00000381441	ENST00000373184		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000381441	ENST00000373187		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000381441	ENST00000356100		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000381441	ENST00000373190		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000381441	ENST00000373193		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000381441	ENST00000373198		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000381441	ENST00000373201		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-intron	ENST00000381441	ENST00000485499		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000373184		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000373187		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000356100		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000373190		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000373193		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000373198		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000334635	ENST00000373201		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
5CDS-intron	ENST00000334635	ENST00000485499		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000373184		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000373187		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000356100		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000373190		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000373193		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000373198		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-3CDS	ENST00000513800	ENST00000373201		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
intron-intron	ENST00000513800	ENST00000485499		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000373184		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000373187		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000356100		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000373190		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000373193		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000373198		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000381437	ENST00000373201		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
5CDS-intron	ENST00000381437	ENST00000485499		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000373184		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000373187		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000356100		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000373190		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000373193		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000373198		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000451288	ENST00000373201		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
5CDS-intron	ENST00000451288	ENST00000485499		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	DCUN1D4	chr4	52777340	+	PTPRT	chr20	41101202	-
Frame-shit	ENST00000351989	ENST00000296585		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DGCR8	chr22	20080430	+	ITGA2	chr5	52385776	+
intron-3CDS	ENST00000383024	ENST00000296585		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DGCR8	chr22	20080430	+	ITGA2	chr5	52385776	+
intron-3CDS	ENST00000407755	ENST00000296585		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DGCR8	chr22	20080430	+	ITGA2	chr5	52385776	+
Frame-shit	ENST00000399506	ENST00000568104		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
Frame-shit	ENST00000399506	ENST00000245157		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
5CDS-intron	ENST00000399506	ENST00000561951		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
Frame-shit	ENST00000302955	ENST00000568104		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
Frame-shit	ENST00000302955	ENST00000245157		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
5CDS-intron	ENST00000302955	ENST00000561951		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
Frame-shit	ENST00000399510	ENST00000568104		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
Frame-shit	ENST00000399510	ENST00000245157		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
5CDS-intron	ENST00000399510	ENST00000561951		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
intron-3CDS	ENST00000485100	ENST00000568104		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
intron-3CDS	ENST00000485100	ENST00000245157		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
intron-intron	ENST00000485100	ENST00000561951		TCGA	RV	SKCM	TCGA-EE-A3AE-06A	DLG4	chr17	7106222	-	BBS2	chr16	56548592	-
intron-5UTR	ENST00000587077	ENST00000531499		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000587077	ENST00000535815		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000587077	ENST00000238699		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000587077	ENST00000529300		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000392250	ENST00000531499		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000392250	ENST00000535815		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000392250	ENST00000238699		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000392250	ENST00000529300		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000586987	ENST00000531499		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000586987	ENST00000535815		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000586987	ENST00000238699		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000586987	ENST00000529300		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000342179	ENST00000531499		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000342179	ENST00000535815		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000342179	ENST00000238699		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
5CDS-5UTR	ENST00000342179	ENST00000529300		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000590651	ENST00000531499		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000590651	ENST00000535815		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000590651	ENST00000238699		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-5UTR	ENST00000590651	ENST00000529300		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	DPY19L3	chr19	32930816	+	GPR68	chr14	91701523	-
intron-3CDS	ENST00000448430	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000448430	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-intron	ENST00000448430	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000380679	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000380679	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-intron	ENST00000380679	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000457155	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000457155	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-intron	ENST00000457155	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000348518	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000348518	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-intron	ENST00000348518	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000321149	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000321149	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
intron-intron	ENST00000321149	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	DYX1C1	chr15	55700419	-	LSAMP	chr3	116163802	-
In-frame	ENST00000346169	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000346169	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000346169	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000414031	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000414031	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000414031	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000392537	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000392537	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000392537	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000382330	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000382330	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000382330	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000350481	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000350481	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000350481	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000352767	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000352767	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000352767	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000427845	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000427845	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000427845	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000342981	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000342981	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000342981	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000319274	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000319274	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000319274	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000424196	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000424196	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000424196	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000411531	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000411531	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000411531	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000441154	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000441154	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000441154	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000434061	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000434061	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000434061	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
In-frame	ENST00000435046	ENST00000223357		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000435046	ENST00000454218		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
5CDS-intron	ENST00000435046	ENST00000450684		TCGA	RV	SKCM	TCGA-BF-A3DJ-01A	EIF4G1	chr3	184045091	+	AEBP1	chr7	44143960	+
Frame-shit	ENST00000366923	ENST00000366943		TCGA	RV	SKCM	TCGA-EB-A551-01A	EPRS	chr1	220213527	-	USH2A	chr1	215853718	-
Frame-shit	ENST00000366923	ENST00000307340		TCGA	RV	SKCM	TCGA-EB-A551-01A	EPRS	chr1	220213527	-	USH2A	chr1	215853718	-
5CDS-intron	ENST00000366923	ENST00000366942		TCGA	RV	SKCM	TCGA-EB-A551-01A	EPRS	chr1	220213527	-	USH2A	chr1	215853718	-
intron-3CDS	ENST00000468487	ENST00000366943		TCGA	RV	SKCM	TCGA-EB-A551-01A	EPRS	chr1	220213527	-	USH2A	chr1	215853718	-
intron-3CDS	ENST00000468487	ENST00000307340		TCGA	RV	SKCM	TCGA-EB-A551-01A	EPRS	chr1	220213527	-	USH2A	chr1	215853718	-
intron-intron	ENST00000468487	ENST00000366942		TCGA	RV	SKCM	TCGA-EB-A551-01A	EPRS	chr1	220213527	-	USH2A	chr1	215853718	-
5CDS-intron	ENST00000267101	ENST00000518164		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000267101	ENST00000521291		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000267101	ENST00000396070		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000267101	ENST00000287038		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000267101	ENST00000523172		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000450146	ENST00000518164		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000450146	ENST00000521291		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000450146	ENST00000396070		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000450146	ENST00000287038		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000450146	ENST00000523172		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000415288	ENST00000518164		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000415288	ENST00000521291		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000415288	ENST00000396070		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000415288	ENST00000287038		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000415288	ENST00000523172		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000553131	ENST00000518164		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000553131	ENST00000521291		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000553131	ENST00000396070		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000553131	ENST00000287038		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000553131	ENST00000523172		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000411731	ENST00000518164		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000411731	ENST00000521291		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000411731	ENST00000396070		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000411731	ENST00000287038		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
intron-intron	ENST00000411731	ENST00000523172		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000549832	ENST00000518164		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000549832	ENST00000521291		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000549832	ENST00000396070		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000549832	ENST00000287038		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
5CDS-intron	ENST00000549832	ENST00000523172		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	ERBB3	chr12	56497283	+	RPL30	chr8	99058697	-
Frame-shit	ENST00000504595	ENST00000231420		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	FBXL7	chr5	15616181	+	AGXT2	chr5	35003966	-
5UTR-3CDS	ENST00000510662	ENST00000231420		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	FBXL7	chr5	15616181	+	AGXT2	chr5	35003966	-
Frame-shit	ENST00000329673	ENST00000231420		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	FBXL7	chr5	15616181	+	AGXT2	chr5	35003966	-
intron-3CDS	ENST00000358621	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000358621	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3UTR	ENST00000358621	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000357447	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000357447	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3UTR	ENST00000357447	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000378503	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000378503	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3UTR	ENST00000378503	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
Frame-shit	ENST00000342409	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
Frame-shit	ENST00000342409	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
5CDS-3UTR	ENST00000342409	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000493380	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000493380	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3UTR	ENST00000493380	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000475141	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000475141	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3UTR	ENST00000475141	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000492155	ENST00000377242		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3CDS	ENST00000492155	ENST00000377252		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
intron-3UTR	ENST00000492155	ENST00000377238		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	FRMD4A	chr10	14050059	-	PLXDC2	chr10	20465928	+
3UTR-3CDS	ENST00000229239	ENST00000248553		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-intron	ENST00000229239	ENST00000429938		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-3CDS	ENST00000396856	ENST00000248553		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-intron	ENST00000396856	ENST00000429938		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-3CDS	ENST00000396861	ENST00000248553		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-intron	ENST00000396861	ENST00000429938		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-3CDS	ENST00000396859	ENST00000248553		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
3UTR-intron	ENST00000396859	ENST00000429938		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
Frame-shit	ENST00000396858	ENST00000248553		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
5CDS-intron	ENST00000396858	ENST00000429938		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	GAPDH	chr12	6647481	+	HSPB1	chr7	75931861	+
5CDS-5UTR	ENST00000413795	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000413795	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000413795	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000369138	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000369138	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000369138	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000421544	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000421544	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000421544	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000358361	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000358361	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000358361	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000318991	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000318991	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000318991	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000369137	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000369137	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000369137	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000369134	ENST00000369293		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-5UTR	ENST00000369134	ENST00000358812		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
5CDS-intron	ENST00000369134	ENST00000474553		TCGA	RV	SKCM	TCGA-ER-A197-06A	GRIK2	chr6	102134228	+	MANEA	chr6	96034278	+
Frame-shit	ENST00000454366	ENST00000381031		TCGA	RV	SKCM	TCGA-ER-A2NC-06A	GTSE1	chr22	46693376	+	TTC38	chr22	46679870	+
Frame-shit	ENST00000454366	ENST00000445282		TCGA	RV	SKCM	TCGA-ER-A2NC-06A	GTSE1	chr22	46693376	+	TTC38	chr22	46679870	+
In-frame	ENST00000389617	ENST00000378101		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GXYLT2	chr3	72971486	+	NEK3	chr13	52719026	-
In-frame	ENST00000389617	ENST00000339406		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GXYLT2	chr3	72971486	+	NEK3	chr13	52719026	-
In-frame	ENST00000389617	ENST00000452082		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GXYLT2	chr3	72971486	+	NEK3	chr13	52719026	-
In-frame	ENST00000389617	ENST00000400357		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GXYLT2	chr3	72971486	+	NEK3	chr13	52719026	-
Frame-shit	ENST00000233099	ENST00000311028		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000233099	ENST00000395923		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000233099	ENST00000220931		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000233099	ENST00000521599		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000233099	ENST00000522951		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000233099	ENST00000519508		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
5CDS-intron	ENST00000233099	ENST00000521371		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000354531	ENST00000311028		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000354531	ENST00000395923		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000354531	ENST00000220931		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000354531	ENST00000521599		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000354531	ENST00000522951		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
Frame-shit	ENST00000354531	ENST00000519508		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
5CDS-intron	ENST00000354531	ENST00000521371		TCGA	RV	SKCM	TCGA-EE-A3AG-06A	HEATR5B	chr2	37280645	-	NCALD	chr8	102705124	-
5CDS-intron	ENST00000447654	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000447654	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000401473	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000401473	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000311487	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000311487	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000347617	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000347617	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
intron-intron	ENST00000395004	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
intron-intron	ENST00000395004	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
intron-intron	ENST00000478214	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
intron-intron	ENST00000478214	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000374116	ENST00000322349		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000374116	ENST00000547833		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	HMGA1	chr6	34214008	+	EEA1	chr12	93229203	-
In-frame	ENST00000367265	ENST00000448150		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
In-frame	ENST00000367265	ENST00000367649		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
5CDS-intron	ENST00000367265	ENST00000465723		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
5CDS-intron	ENST00000367265	ENST00000462775		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
In-frame	ENST00000367264	ENST00000448150		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
In-frame	ENST00000367264	ENST00000367649		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
5CDS-intron	ENST00000367264	ENST00000465723		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
5CDS-intron	ENST00000367264	ENST00000462775		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
intron-3CDS	ENST00000456180	ENST00000448150		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
intron-3CDS	ENST00000456180	ENST00000367649		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
intron-intron	ENST00000456180	ENST00000465723		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
intron-intron	ENST00000456180	ENST00000462775		TCGA	RV	SKCM	TCGA-EE-A3J5-06A	KDM5B	chr1	202777230	-	RASAL2	chr1	178389646	+
5CDS-intron	ENST00000288135	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	KIT	chr4	55606881	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000288135	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	KIT	chr4	55606881	+	FAR1	chr11	13744912	+
5CDS-intron	ENST00000288135	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	KIT	chr4	55606881	+	FAR1	chr11	13744912	+
In-frame	ENST00000316157	ENST00000278360		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
In-frame	ENST00000316157	ENST00000378880		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
In-frame	ENST00000316157	ENST00000378878		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
5CDS-5UTR	ENST00000316157	ENST00000532848		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
5CDS-5UTR	ENST00000316157	ENST00000534803		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
intron-3CDS	ENST00000469487	ENST00000278360		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
intron-3CDS	ENST00000469487	ENST00000378880		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
intron-3CDS	ENST00000469487	ENST00000378878		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
intron-5UTR	ENST00000469487	ENST00000532848		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
intron-5UTR	ENST00000469487	ENST00000534803		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LARP4B	chr10	909683	-	PAMR1	chr11	35515820	-
In-frame	ENST00000379509	ENST00000336596		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000379509	ENST00000452448		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000379509	ENST00000494014		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000319406	ENST00000336596		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000319406	ENST00000452448		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000319406	ENST00000494014		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
3UTR-3CDS	ENST00000491680	ENST00000336596		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
3UTR-3CDS	ENST00000491680	ENST00000452448		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
3UTR-3CDS	ENST00000491680	ENST00000494014		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000359433	ENST00000336596		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000359433	ENST00000452448		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000359433	ENST00000494014		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000309052	ENST00000336596		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000309052	ENST00000452448		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000309052	ENST00000494014		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000540623	ENST00000336596		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000540623	ENST00000452448		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
In-frame	ENST00000540623	ENST00000494014		TCGA	RV	SKCM	TCGA-EB-A550-01A	LCLAT1	chr2	30756180	+	EPHA3	chr3	89390066	+
intron-5UTR	ENST00000524419	ENST00000257821		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000524419	ENST00000323180		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000524419	ENST00000418153		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-intron	ENST00000524419	ENST00000527753		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000528989	ENST00000257821		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000528989	ENST00000323180		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000528989	ENST00000418153		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-intron	ENST00000528989	ENST00000527753		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000315571	ENST00000257821		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000315571	ENST00000323180		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
5CDS-5UTR	ENST00000315571	ENST00000418153		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
5CDS-intron	ENST00000315571	ENST00000527753		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000529759	ENST00000257821		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000529759	ENST00000323180		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-5UTR	ENST00000529759	ENST00000418153		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
intron-intron	ENST00000529759	ENST00000527753		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LDLRAD3	chr11	36057799	+	PHF21A	chr11	46113774	-
Frame-shit	ENST00000215886	ENST00000404234		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000529632		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000360929		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000248933		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000343706		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000402979		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000403121		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
Frame-shit	ENST00000215886	ENST00000411842		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
5CDS-3UTR	ENST00000215886	ENST00000494013		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	LGALS2	chr22	37975907	-	SEZ6L	chr22	26773639	+
intron-3CDS	ENST00000380121	ENST00000337963		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-intron	ENST00000380121	ENST00000382907		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-intron	ENST00000380121	ENST00000382905		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-3CDS	ENST00000504114	ENST00000337963		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-intron	ENST00000504114	ENST00000382907		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-intron	ENST00000504114	ENST00000382905		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-3CDS	ENST00000357505	ENST00000337963		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-intron	ENST00000357505	ENST00000382907		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-intron	ENST00000357505	ENST00000382905		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-3CDS	ENST00000399396	ENST00000337963		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-intron	ENST00000399396	ENST00000382907		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-intron	ENST00000399396	ENST00000382905		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-3CDS	ENST00000446957	ENST00000337963		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-intron	ENST00000446957	ENST00000382907		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
intron-intron	ENST00000446957	ENST00000382905		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-3CDS	ENST00000267068	ENST00000337963		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-intron	ENST00000267068	ENST00000382907		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-intron	ENST00000267068	ENST00000382905		TCGA	RV	SKCM	TCGA-ER-A42L-06A	N4BP2L2	chr13	33112755	-	ZMYM5	chr13	20413125	-
5UTR-5UTR	ENST00000282516	ENST00000265113		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
5UTR-3UTR	ENST00000282516	ENST00000506725		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
5UTR-3UTR	ENST00000282516	ENST00000381918		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
5UTR-5UTR	ENST00000448238	ENST00000265113		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
5UTR-3UTR	ENST00000448238	ENST00000506725		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
5UTR-3UTR	ENST00000448238	ENST00000381918		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
intron-5UTR	ENST00000504430	ENST00000265113		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
intron-3UTR	ENST00000504430	ENST00000506725		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
intron-3UTR	ENST00000504430	ENST00000381918		TCGA	RV	SKCM	TCGA-EE-A2MJ-06A	NIPBL	chr5	36877280	+	SLC1A3	chr5	36608431	+
3UTR-3CDS	ENST00000492242	ENST00000319481		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
3UTR-3CDS	ENST00000492242	ENST00000399443		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
3UTR-3CDS	ENST00000492242	ENST00000357041		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
3UTR-intron	ENST00000492242	ENST00000399441		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
3UTR-intron	ENST00000492242	ENST00000582618		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-3CDS	ENST00000382291	ENST00000319481		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-3CDS	ENST00000382291	ENST00000399443		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-3CDS	ENST00000382291	ENST00000357041		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-intron	ENST00000382291	ENST00000399441		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-intron	ENST00000382291	ENST00000582618		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-3CDS	ENST00000382285	ENST00000319481		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-3CDS	ENST00000382285	ENST00000399443		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-3CDS	ENST00000382285	ENST00000357041		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-intron	ENST00000382285	ENST00000399441		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
5UTR-intron	ENST00000382285	ENST00000582618		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
intron-3CDS	ENST00000608736	ENST00000319481		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
intron-3CDS	ENST00000608736	ENST00000399443		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
intron-3CDS	ENST00000608736	ENST00000357041		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
intron-intron	ENST00000608736	ENST00000399441		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
intron-intron	ENST00000608736	ENST00000582618		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	NRSN2	chr20	327786	+	OSBPL1A	chr18	21776164	-
intron-3CDS	ENST00000371687	ENST00000371947		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-3CDS	ENST00000371687	ENST00000437752		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-3CDS	ENST00000371687	ENST00000331772		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-intron	ENST00000371687	ENST00000466945		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
Frame-shit	ENST00000543648	ENST00000371947		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
Frame-shit	ENST00000543648	ENST00000437752		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
Frame-shit	ENST00000543648	ENST00000331772		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
5CDS-intron	ENST00000543648	ENST00000466945		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-3CDS	ENST00000490164	ENST00000371947		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-3CDS	ENST00000490164	ENST00000437752		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-3CDS	ENST00000490164	ENST00000331772		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
intron-intron	ENST00000490164	ENST00000466945		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
Frame-shit	ENST00000336126	ENST00000371947		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
Frame-shit	ENST00000336126	ENST00000437752		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
Frame-shit	ENST00000336126	ENST00000331772		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
5CDS-intron	ENST00000336126	ENST00000466945		TCGA	RV	SKCM	TCGA-EE-A2MP-06A	PCGF5	chr10	93024277	+	RNLS	chr10	90332818	-
5UTR-3CDS	ENST00000393179	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000393179	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
Frame-shit	ENST00000313546	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
Frame-shit	ENST00000313546	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000549035	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000549035	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000541909	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000541909	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000549504	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5UTR-3CDS	ENST00000549504	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
intron-3CDS	ENST00000378528	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
intron-3CDS	ENST00000378528	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
intron-3CDS	ENST00000546740	ENST00000359499		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
intron-3CDS	ENST00000546740	ENST00000304620		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	POC1B	chr12	89918897	-	KRT78	chr12	53233768	-
5CDS-intron	ENST00000263681	ENST00000302351		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000263681	ENST00000510316		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000263681	ENST00000509284		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000263681	ENST00000537006		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000527458	ENST00000302351		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000527458	ENST00000510316		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000527458	ENST00000509284		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000527458	ENST00000537006		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000532497	ENST00000302351		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000532497	ENST00000510316		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000532497	ENST00000509284		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
5CDS-intron	ENST00000532497	ENST00000537006		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
intron-intron	ENST00000532784	ENST00000302351		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
intron-intron	ENST00000532784	ENST00000510316		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
intron-intron	ENST00000532784	ENST00000509284		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
intron-intron	ENST00000532784	ENST00000537006		TCGA	RV	SKCM	TCGA-EE-A20C-06A	POLD3	chr11	74324055	+	ENC1	chr5	73933526	-
Frame-shit	ENST00000407936	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
5CDS-5UTR	ENST00000407936	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
5CDS-5UTR	ENST00000407936	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
5CDS-5UTR	ENST00000407936	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
5CDS-3UTR	ENST00000407936	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
5CDS-5UTR	ENST00000407936	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000405557	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000405557	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000405557	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000405557	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000405557	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000405557	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000442738	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000442738	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000442738	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000442738	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000442738	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000442738	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000460648	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000460648	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000460648	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000460648	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000460648	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000460648	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000488684	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000488684	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000488684	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000488684	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000488684	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000488684	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000606538	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000606538	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000606538	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000606538	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000606538	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000606538	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000470701	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000470701	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000470701	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000470701	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000470701	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000470701	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3CDS	ENST00000608713	ENST00000332674		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000608713	ENST00000361248		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000608713	ENST00000239007		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000608713	ENST00000393134		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-3UTR	ENST00000608713	ENST00000485566		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
intron-5UTR	ENST00000608713	ENST00000369612		TCGA	RV	SKCM	TCGA-D3-A3MU-06A	POLR2F	chr22	38382319	+	MXI1	chr10	111987947	+
5CDS-intron	ENST00000006251	ENST00000359867		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000006251	ENST00000396832		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-5UTR	ENST00000006251	ENST00000400206		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000006251	ENST00000403904		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000006251	ENST00000413574		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000006251	ENST00000405675		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000006251	ENST00000498529		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000403581	ENST00000359867		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000403581	ENST00000396832		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-5UTR	ENST00000403581	ENST00000400206		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000403581	ENST00000403904		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000403581	ENST00000413574		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000403581	ENST00000405675		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000403581	ENST00000498529		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000336985	ENST00000359867		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000336985	ENST00000396832		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-5UTR	ENST00000336985	ENST00000400206		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000336985	ENST00000403904		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000336985	ENST00000413574		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000336985	ENST00000405675		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000336985	ENST00000498529		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-intron	ENST00000477331	ENST00000359867		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-intron	ENST00000477331	ENST00000396832		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-5UTR	ENST00000477331	ENST00000400206		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-intron	ENST00000477331	ENST00000403904		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-intron	ENST00000477331	ENST00000413574		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-intron	ENST00000477331	ENST00000405675		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
3UTR-intron	ENST00000477331	ENST00000498529		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PRR5	chr22	45110551	+	CSNK1E	chr22	38732711	-
In-frame	ENST00000394936	ENST00000374736		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
5CDS-intron	ENST00000394936	ENST00000494467		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
5CDS-intron	ENST00000394936	ENST00000423487		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
5CDS-intron	ENST00000394936	ENST00000374733		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
In-frame	ENST00000394934	ENST00000374736		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
5CDS-intron	ENST00000394934	ENST00000494467		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
5CDS-intron	ENST00000394934	ENST00000423487		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
5CDS-intron	ENST00000394934	ENST00000374733		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PSAP	chr10	73576058	-	ABCA1	chr9	107567001	-
In-frame	ENST00000394936	ENST00000245907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PSAP	chr10	73576058	-	C3	chr19	6720693	-
5CDS-intron	ENST00000394936	ENST00000599668		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PSAP	chr10	73576058	-	C3	chr19	6720693	-
In-frame	ENST00000394934	ENST00000245907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PSAP	chr10	73576058	-	C3	chr19	6720693	-
5CDS-intron	ENST00000394934	ENST00000599668		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PSAP	chr10	73576058	-	C3	chr19	6720693	-
Frame-shit	ENST00000394936	ENST00000275262		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394936	ENST00000392127		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394936	ENST00000453779		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394936	ENST00000361752		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394936	ENST00000361195		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394936	ENST00000424802		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394934	ENST00000275262		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394934	ENST00000392127		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394934	ENST00000453779		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394934	ENST00000361752		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394934	ENST00000361195		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
Frame-shit	ENST00000394934	ENST00000424802		TCGA	RV	SKCM	TCGA-ER-A19G-06A	PSAP	chr10	73576058	-	QKI	chr6	163876363	+
5UTR-3CDS	ENST00000431726	ENST00000393295		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5UTR-intron	ENST00000431726	ENST00000471497		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5UTR-intron	ENST00000431726	ENST00000273541		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5UTR-intron	ENST00000431726	ENST00000393292		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
In-frame	ENST00000265562	ENST00000393295		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5CDS-intron	ENST00000265562	ENST00000471497		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5CDS-intron	ENST00000265562	ENST00000273541		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5CDS-intron	ENST00000265562	ENST00000393292		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PTPN23	chr3	47422670	+	ISY1	chr3	128878019	-
5CDS-5UTR	ENST00000295874	ENST00000476844		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000295874	ENST00000492590		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000295874	ENST00000466788		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000295874	ENST00000468189		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000295874	ENST00000341848		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000474889	ENST00000476844		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000474889	ENST00000492590		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000474889	ENST00000466788		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000474889	ENST00000468189		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-intron	ENST00000474889	ENST00000341848		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000495879	ENST00000476844		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000495879	ENST00000492590		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000495879	ENST00000466788		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000495879	ENST00000468189		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000495879	ENST00000341848		TCGA	RV	SKCM	TCGA-D3-A3C6-06A	PTPRG	chr3	61734656	+	FHIT	chr3	60522712	-
5CDS-5UTR	ENST00000393386	ENST00000388802		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
5CDS-5UTR	ENST00000393386	ENST00000326382		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
5CDS-intron	ENST00000393386	ENST00000464752		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
5CDS-5UTR	ENST00000449182	ENST00000388802		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
5CDS-5UTR	ENST00000449182	ENST00000326382		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
5CDS-intron	ENST00000449182	ENST00000464752		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
intron-5UTR	ENST00000483028	ENST00000388802		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
intron-5UTR	ENST00000483028	ENST00000326382		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
intron-intron	ENST00000483028	ENST00000464752		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PTPRZ1	chr7	121568275	+	SRRM3	chr7	75864346	+
5UTR-3CDS	ENST00000533486	ENST00000398309		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000533486	ENST00000376104		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000533486	ENST00000418306		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000533486	ENST00000280241		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000533486	ENST00000543673		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000376106		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000330014		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000537455		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000524982		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000532653		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000531015		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000533486	ENST00000398301		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000533486	ENST00000426717		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000533486	ENST00000404783		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000533486	ENST00000398304		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000533486	ENST00000530800		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000533486	ENST00000472545		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000534141	ENST00000398309		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000534141	ENST00000376104		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000534141	ENST00000418306		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000534141	ENST00000280241		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000534141	ENST00000543673		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000376106		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000330014		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000537455		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000524982		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000532653		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000531015		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000534141	ENST00000398301		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000534141	ENST00000426717		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000534141	ENST00000404783		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000534141	ENST00000398304		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000534141	ENST00000530800		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000534141	ENST00000472545		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000260056	ENST00000398309		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000260056	ENST00000376104		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000260056	ENST00000418306		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000260056	ENST00000280241		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000260056	ENST00000543673		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000376106		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000330014		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000537455		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000524982		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000532653		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000531015		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000260056	ENST00000398301		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000260056	ENST00000426717		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000260056	ENST00000404783		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000260056	ENST00000398304		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000260056	ENST00000530800		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000260056	ENST00000472545		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000527633	ENST00000398309		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000527633	ENST00000376104		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000527633	ENST00000418306		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000527633	ENST00000280241		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-3CDS	ENST00000527633	ENST00000543673		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000376106		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000330014		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000537455		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000524982		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000532653		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000531015		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-5UTR	ENST00000527633	ENST00000398301		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000527633	ENST00000426717		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000527633	ENST00000404783		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000527633	ENST00000398304		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000527633	ENST00000530800		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
5UTR-intron	ENST00000527633	ENST00000472545		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525117	ENST00000398309		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525117	ENST00000376104		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525117	ENST00000418306		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525117	ENST00000280241		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000525117	ENST00000543673		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000376106		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000330014		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000537455		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000524982		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000532653		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000531015		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000525117	ENST00000398301		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525117	ENST00000426717		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525117	ENST00000404783		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525117	ENST00000398304		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525117	ENST00000530800		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000525117	ENST00000472545		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000532548	ENST00000398309		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000532548	ENST00000376104		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000532548	ENST00000418306		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000532548	ENST00000280241		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-3CDS	ENST00000532548	ENST00000543673		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000376106		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000330014		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000537455		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000524982		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000532653		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000531015		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-5UTR	ENST00000532548	ENST00000398301		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000532548	ENST00000426717		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000532548	ENST00000404783		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000532548	ENST00000398304		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000532548	ENST00000530800		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
intron-intron	ENST00000532548	ENST00000472545		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	RAB30	chr11	82782733	-	DLG2	chr11	83497835	-
In-frame	ENST00000373647	ENST00000342287		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
In-frame	ENST00000373647	ENST00000373487		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
In-frame	ENST00000373647	ENST00000373489		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373647	ENST00000373483		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
5CDS-5UTR	ENST00000373647	ENST00000447726		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
5CDS-3UTR	ENST00000373647	ENST00000538998		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000493854	ENST00000342287		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000493854	ENST00000373487		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000493854	ENST00000373489		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-5UTR	ENST00000493854	ENST00000373483		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-5UTR	ENST00000493854	ENST00000447726		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3UTR	ENST00000493854	ENST00000538998		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000373643	ENST00000342287		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000373643	ENST00000373487		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3CDS	ENST00000373643	ENST00000373489		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-5UTR	ENST00000373643	ENST00000373483		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-5UTR	ENST00000373643	ENST00000447726		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
intron-3UTR	ENST00000373643	ENST00000538998		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RABGAP1	chr9	125782738	+	PBX3	chr9	128691934	+
In-frame	ENST00000307980	ENST00000294053		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
In-frame	ENST00000307980	ENST00000538039		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
Frame-shit	ENST00000307980	ENST00000437826		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
In-frame	ENST00000307980	ENST00000340729		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
5CDS-intron	ENST00000307980	ENST00000543042		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
5CDS-intron	ENST00000307980	ENST00000445069		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
5CDS-intron	ENST00000307980	ENST00000538021		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
5CDS-5UTR	ENST00000307980	ENST00000542555		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-3CDS	ENST00000535644	ENST00000294053		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-3CDS	ENST00000535644	ENST00000538039		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-3CDS	ENST00000535644	ENST00000437826		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-3CDS	ENST00000535644	ENST00000340729		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-intron	ENST00000535644	ENST00000543042		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-intron	ENST00000535644	ENST00000445069		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-intron	ENST00000535644	ENST00000538021		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
intron-5UTR	ENST00000535644	ENST00000542555		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	RAD9A	chr11	67159549	+	CLPB	chr11	72141407	-
In-frame	ENST00000265109	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
In-frame	ENST00000512629	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
In-frame	ENST00000428746	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
In-frame	ENST00000503673	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
5UTR-3CDS	ENST00000515799	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
intron-3CDS	ENST00000506376	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
intron-3CDS	ENST00000507276	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
intron-3CDS	ENST00000397449	ENST00000306862		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	RAI14	chr5	34687060	+	C5orf34	chr5	43494703	-
intron-3CDS	ENST00000372189	ENST00000298585		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
intron-5UTR	ENST00000372189	ENST00000471957		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
intron-3CDS	ENST00000372195	ENST00000298585		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
intron-5UTR	ENST00000372195	ENST00000471957		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
In-frame	ENST00000372190	ENST00000298585		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
5CDS-5UTR	ENST00000372190	ENST00000471957		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
intron-3CDS	ENST00000481260	ENST00000298585		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
intron-5UTR	ENST00000481260	ENST00000471957		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	RAPGEF1	chr9	134585007	-	ZMYND19	chr9	140483170	-
In-frame	ENST00000344041	ENST00000407010		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
5CDS-intron	ENST00000344041	ENST00000399310		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
5CDS-intron	ENST00000344041	ENST00000479493		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
intron-3CDS	ENST00000475788	ENST00000407010		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
intron-intron	ENST00000475788	ENST00000399310		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
intron-intron	ENST00000475788	ENST00000479493		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
intron-3CDS	ENST00000405243	ENST00000407010		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
intron-intron	ENST00000405243	ENST00000399310		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
intron-intron	ENST00000405243	ENST00000479493		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
In-frame	ENST00000401957	ENST00000407010		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
5CDS-intron	ENST00000401957	ENST00000399310		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
5CDS-intron	ENST00000401957	ENST00000479493		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RAPGEF5	chr7	22186515	-	ISPD	chr7	16415866	-
5CDS-intron	ENST00000356208	ENST00000531028		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000356208	ENST00000278559		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000356208	ENST00000529629		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000356208	ENST00000456580		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
intron-intron	ENST00000440234	ENST00000531028		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
intron-intron	ENST00000440234	ENST00000278559		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
intron-intron	ENST00000440234	ENST00000529629		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
intron-intron	ENST00000440234	ENST00000456580		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000371219	ENST00000531028		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000371219	ENST00000278559		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000371219	ENST00000529629		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
5CDS-intron	ENST00000371219	ENST00000456580		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RBM38	chr20	55968389	+	CAPN5	chr11	76823635	+
Frame-shit	ENST00000529163	ENST00000205061		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
Frame-shit	ENST00000529163	ENST00000422840		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
5CDS-intron	ENST00000529163	ENST00000447066		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
In-frame	ENST00000394920	ENST00000205061		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
In-frame	ENST00000394920	ENST00000422840		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
5CDS-intron	ENST00000394920	ENST00000447066		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
Frame-shit	ENST00000527914	ENST00000205061		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
Frame-shit	ENST00000527914	ENST00000422840		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
5CDS-intron	ENST00000527914	ENST00000447066		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
Frame-shit	ENST00000262584	ENST00000205061		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
Frame-shit	ENST00000262584	ENST00000422840		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
5CDS-intron	ENST00000262584	ENST00000447066		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
intron-3CDS	ENST00000528957	ENST00000205061		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
intron-3CDS	ENST00000528957	ENST00000422840		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
intron-intron	ENST00000528957	ENST00000447066		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	RPL8	chr8	146015154	-	GLG1	chr16	74566051	-
Frame-shit	ENST00000414786	ENST00000395733		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000414786	ENST00000216075		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000414786	ENST00000395732		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000445220	ENST00000395733		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000445220	ENST00000216075		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000445220	ENST00000395732		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000262795	ENST00000395733		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000262795	ENST00000216075		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
Frame-shit	ENST00000262795	ENST00000395732		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	MIOX	chr22	50925814	+
5CDS-intron	ENST00000580123	ENST00000584767		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000580123	ENST00000581589		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000580123	ENST00000322444		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
3UTR-intron	ENST00000585293	ENST00000584767		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
3UTR-intron	ENST00000585293	ENST00000581589		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
3UTR-intron	ENST00000585293	ENST00000322444		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000329783	ENST00000584767		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000329783	ENST00000581589		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000329783	ENST00000322444		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000450736	ENST00000584767		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000450736	ENST00000581589		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000450736	ENST00000322444		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000538213	ENST00000584767		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000538213	ENST00000581589		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
5CDS-intron	ENST00000538213	ENST00000322444		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SLC16A5	chr17	73094276	+	KCTD2	chr17	73059113	+
Frame-shit	ENST00000525071	ENST00000299001		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
5CDS-intron	ENST00000525071	ENST00000537419		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
Frame-shit	ENST00000429869	ENST00000299001		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
5CDS-intron	ENST00000429869	ENST00000537419		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
In-frame	ENST00000525815	ENST00000299001		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
5CDS-intron	ENST00000525815	ENST00000537419		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
5UTR-3CDS	ENST00000265836	ENST00000299001		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
5UTR-intron	ENST00000265836	ENST00000537419		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
intron-3CDS	ENST00000375682	ENST00000299001		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
intron-intron	ENST00000375682	ENST00000537419		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	SLC35F2	chr11	107729384	-	PIWIL4	chr11	94340605	+
In-frame	ENST00000331565	ENST00000370192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
5CDS-intron	ENST00000331565	ENST00000474241		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
5CDS-intron	ENST00000331565	ENST00000423006		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
5CDS-intron	ENST00000331565	ENST00000306031		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
intron-3CDS	ENST00000465159	ENST00000370192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
intron-intron	ENST00000465159	ENST00000474241		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
intron-intron	ENST00000465159	ENST00000423006		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
intron-intron	ENST00000465159	ENST00000306031		TCGA	RV	SKCM	TCGA-EB-A82C-01A	SLC6A17	chr1	110719361	+	DPYD	chr1	97564188	-
5CDS-5UTR	ENST00000316999	ENST00000536681		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000316999	ENST00000549080		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000316999	ENST00000182377		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000316999	ENST00000547116		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000370452	ENST00000536681		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000370452	ENST00000549080		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000370452	ENST00000182377		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000370452	ENST00000547116		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000370455	ENST00000536681		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000370455	ENST00000549080		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-5UTR	ENST00000370455	ENST00000182377		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
5CDS-intron	ENST00000370455	ENST00000547116		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
intron-5UTR	ENST00000422334	ENST00000536681		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
intron-intron	ENST00000422334	ENST00000549080		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
intron-5UTR	ENST00000422334	ENST00000182377		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
intron-intron	ENST00000422334	ENST00000547116		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SMAP1	chr6	71508440	+	FAR2	chr12	29423345	+
Frame-shit	ENST00000216373	ENST00000554719		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
Frame-shit	ENST00000216373	ENST00000335750		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000216373	ENST00000557594		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000216373	ENST00000281127		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000216373	ENST00000428277		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000216373	ENST00000556003		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
Frame-shit	ENST00000543680	ENST00000554719		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
Frame-shit	ENST00000543680	ENST00000335750		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000543680	ENST00000557594		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000543680	ENST00000281127		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000543680	ENST00000428277		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000543680	ENST00000556003		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
intron-3CDS	ENST00000555794	ENST00000554719		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
intron-3CDS	ENST00000555794	ENST00000335750		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
intron-intron	ENST00000555794	ENST00000557594		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
intron-intron	ENST00000555794	ENST00000281127		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
intron-intron	ENST00000555794	ENST00000428277		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
intron-intron	ENST00000555794	ENST00000556003		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	SOS2	chr14	50600841	-	NRXN3	chr14	79423585	+
5CDS-intron	ENST00000371847	ENST00000370872		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-5UTR	ENST00000371847	ENST00000340866		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-intron	ENST00000371847	ENST00000492102		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-5UTR	ENST00000371847	ENST00000417775		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-5UTR	ENST00000371847	ENST00000370871		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-intron	ENST00000371843	ENST00000370872		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-5UTR	ENST00000371843	ENST00000340866		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-intron	ENST00000371843	ENST00000492102		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-5UTR	ENST00000371843	ENST00000417775		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5CDS-5UTR	ENST00000371843	ENST00000370871		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-intron	ENST00000396199	ENST00000370872		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-5UTR	ENST00000396199	ENST00000340866		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-intron	ENST00000396199	ENST00000492102		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-5UTR	ENST00000396199	ENST00000417775		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-5UTR	ENST00000396199	ENST00000370871		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-intron	ENST00000463938	ENST00000370872		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-5UTR	ENST00000463938	ENST00000340866		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-intron	ENST00000463938	ENST00000492102		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-5UTR	ENST00000463938	ENST00000417775		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
5UTR-5UTR	ENST00000463938	ENST00000370871		TCGA	RV	SKCM	TCGA-EB-A551-01A	SPATA6	chr1	48937630	-	CRYZ	chr1	75190518	-
In-frame	ENST00000299084	ENST00000566442		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	SPRED1	chr15	38591748	+	GANC	chr15	42579889	+
In-frame	ENST00000299084	ENST00000318010		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	SPRED1	chr15	38591748	+	GANC	chr15	42579889	+
5CDS-intron	ENST00000299084	ENST00000440615		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	SPRED1	chr15	38591748	+	GANC	chr15	42579889	+
3UTR-3CDS	ENST00000561205	ENST00000566442		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	SPRED1	chr15	38591748	+	GANC	chr15	42579889	+
3UTR-3CDS	ENST00000561205	ENST00000318010		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	SPRED1	chr15	38591748	+	GANC	chr15	42579889	+
3UTR-intron	ENST00000561205	ENST00000440615		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	SPRED1	chr15	38591748	+	GANC	chr15	42579889	+
Frame-shit	ENST00000533211	ENST00000263674		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	SPTBN2	chr11	66472069	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000533211	ENST00000536170		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	SPTBN2	chr11	66472069	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000309996	ENST00000263674		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	SPTBN2	chr11	66472069	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000309996	ENST00000536170		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	SPTBN2	chr11	66472069	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000529997	ENST00000263674		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	SPTBN2	chr11	66472069	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000529997	ENST00000536170		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	SPTBN2	chr11	66472069	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000543304	ENST00000353891		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000543304	ENST00000263200		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000543304	ENST00000427926		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
5CDS-intron	ENST00000543304	ENST00000442042		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
In-frame	ENST00000334805	ENST00000353891		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
In-frame	ENST00000334805	ENST00000263200		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
In-frame	ENST00000334805	ENST00000427926		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
5CDS-intron	ENST00000334805	ENST00000442042		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000538536	ENST00000353891		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000538536	ENST00000263200		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000538536	ENST00000427926		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-intron	ENST00000538536	ENST00000442042		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
5UTR-3CDS	ENST00000538437	ENST00000353891		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
5UTR-3CDS	ENST00000538437	ENST00000263200		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
5UTR-3CDS	ENST00000538437	ENST00000427926		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
5UTR-intron	ENST00000538437	ENST00000442042		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000545082	ENST00000353891		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000545082	ENST00000263200		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000545082	ENST00000427926		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
intron-intron	ENST00000545082	ENST00000442042		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	STARD10	chr11	72492020	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000373943	ENST00000400301		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
Frame-shit	ENST00000373943	ENST00000308271		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
5CDS-intron	ENST00000373943	ENST00000374732		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
5CDS-intron	ENST00000373943	ENST00000529637		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
5CDS-intron	ENST00000373943	ENST00000479177		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
5CDS-intron	ENST00000373943	ENST00000421625		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
intron-3CDS	ENST00000468761	ENST00000400301		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
intron-3CDS	ENST00000468761	ENST00000308271		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
intron-intron	ENST00000468761	ENST00000374732		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
intron-intron	ENST00000468761	ENST00000529637		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
intron-intron	ENST00000468761	ENST00000479177		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
intron-intron	ENST00000468761	ENST00000421625		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	STX12	chr1	28138779	+	USP48	chr1	22079612	-
In-frame	ENST00000322652	ENST00000355485		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000322652	ENST00000369510		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000322652	ENST00000310260		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000322652	ENST00000369509		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
5CDS-intron	ENST00000322652	ENST00000474344		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000580398	ENST00000355485		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000580398	ENST00000369510		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000580398	ENST00000310260		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
In-frame	ENST00000580398	ENST00000369509		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
5CDS-intron	ENST00000580398	ENST00000474344		TCGA	RV	SKCM	TCGA-D3-A5GU-06A	SUZ12	chr17	30323896	+	VANGL1	chr1	116202262	+
Frame-shit	ENST00000313288	ENST00000303277		TCGA	RV	SKCM	TCGA-D3-A8GR-06A	TACC3	chr4	1739429	+	TMEM129	chr4	1720353	-
Frame-shit	ENST00000313288	ENST00000382936		TCGA	RV	SKCM	TCGA-D3-A8GR-06A	TACC3	chr4	1739429	+	TMEM129	chr4	1720353	-
Frame-shit	ENST00000313288	ENST00000536901		TCGA	RV	SKCM	TCGA-D3-A8GR-06A	TACC3	chr4	1739429	+	TMEM129	chr4	1720353	-
intron-3CDS	ENST00000372978	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000372978	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000372978	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000372978	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000494547	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000494547	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000494547	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000494547	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000456846	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000456846	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000456846	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000456846	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000372982	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000372982	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000372982	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000372982	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000472818	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000472818	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000472818	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000472818	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000372977	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000372977	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000372977	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000372977	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000482926	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000482926	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000482926	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000482926	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000465926	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000465926	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
Frame-shit	ENST00000465926	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
5CDS-intron	ENST00000465926	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000482432	ENST00000398016		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000482432	ENST00000359742		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-3CDS	ENST00000482432	ENST00000286445		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-intron	ENST00000482432	ENST00000542021		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	TAF8	chr6	42036345	+	GRIP1	chr12	66990707	-
intron-5UTR	ENST00000207157	ENST00000369567		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
intron-5UTR	ENST00000207157	ENST00000369569		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
intron-5UTR	ENST00000207157	ENST00000256658		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
intron-intron	ENST00000207157	ENST00000462591		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
intron-5UTR	ENST00000207157	ENST00000369566		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
5CDS-5UTR	ENST00000369429	ENST00000369567		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
5CDS-5UTR	ENST00000369429	ENST00000369569		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
5CDS-5UTR	ENST00000369429	ENST00000256658		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
5CDS-intron	ENST00000369429	ENST00000462591		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
5CDS-5UTR	ENST00000369429	ENST00000369566		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	TBX15	chr1	119530214	-	AP4B1	chr1	114447415	-
5UTR-5UTR	ENST00000361905	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000361905	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000361905	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-5UTR	ENST00000527636	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000527636	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000527636	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-5UTR	ENST00000527575	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000527575	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000527575	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-5UTR	ENST00000334310	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000334310	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
5UTR-intron	ENST00000334310	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
intron-5UTR	ENST00000361985	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
intron-intron	ENST00000361985	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
intron-intron	ENST00000361985	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
intron-5UTR	ENST00000526600	ENST00000354817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
intron-intron	ENST00000526600	ENST00000527202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
intron-intron	ENST00000526600	ENST00000532502		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12697108	+	FAR1	chr11	13716306	+
Frame-shit	ENST00000588659	ENST00000592782		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000588659	ENST00000258960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
5CDS-3UTR	ENST00000588659	ENST00000590114		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000541594	ENST00000592782		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000541594	ENST00000258960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
5CDS-3UTR	ENST00000541594	ENST00000590114		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000536052	ENST00000592782		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000536052	ENST00000258960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
5CDS-3UTR	ENST00000536052	ENST00000590114		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000331615	ENST00000592782		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000331615	ENST00000258960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
5CDS-3UTR	ENST00000331615	ENST00000590114		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
3UTR-3CDS	ENST00000592564	ENST00000592782		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
3UTR-3CDS	ENST00000592564	ENST00000258960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
3UTR-3UTR	ENST00000592564	ENST00000590114		TCGA	RV	SKCM	TCGA-ER-A19T-01A	TMEM106A	chr17	41365910	+	NMT1	chr17	43173562	+
Frame-shit	ENST00000551577	ENST00000399132		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-intron	ENST00000551577	ENST00000399127		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-intron	ENST00000551577	ENST00000399126		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
Frame-shit	ENST00000266534	ENST00000399132		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-intron	ENST00000266534	ENST00000399127		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-intron	ENST00000266534	ENST00000399126		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
In-frame	ENST00000536799	ENST00000399132		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-intron	ENST00000536799	ENST00000399127		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-intron	ENST00000536799	ENST00000399126		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
intron-3CDS	ENST00000546978	ENST00000399132		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
intron-intron	ENST00000546978	ENST00000399127		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
intron-intron	ENST00000546978	ENST00000399126		TCGA	RV	SKCM	TCGA-EE-A20I-06A	TMEM117	chr12	44338145	+	COL25A1	chr4	109862593	-
5CDS-5UTR	ENST00000425528	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000425528	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000425528	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000441499	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000441499	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000441499	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000356861	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000356861	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000356861	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000450764	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000450764	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-intron	ENST00000450764	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000592287	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000592287	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-intron	ENST00000592287	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000588216	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000588216	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-intron	ENST00000588216	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000589956	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000589956	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
intron-intron	ENST00000589956	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GO-06A	TNPO2	chr19	12810008	-	ELK3	chr12	96588323	+
5UTR-3CDS	ENST00000301923	ENST00000333407		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
5UTR-intron	ENST00000301923	ENST00000488874		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
5UTR-5UTR	ENST00000301923	ENST00000473717		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000402203	ENST00000333407		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000402203	ENST00000488874		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000402203	ENST00000473717		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000454349	ENST00000333407		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000454349	ENST00000488874		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000454349	ENST00000473717		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000335727	ENST00000333407		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000335727	ENST00000488874		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000335727	ENST00000473717		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-3CDS	ENST00000497559	ENST00000333407		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-intron	ENST00000497559	ENST00000488874		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
intron-5UTR	ENST00000497559	ENST00000473717		TCGA	RV	SKCM	TCGA-GN-A266-06A	TNRC6B	chr22	40441002	+	FAM83F	chr22	40415172	+
5CDS-intron	ENST00000331018	ENST00000377093		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000331018	ENST00000263934		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000331018	ENST00000377086		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000331018	ENST00000377083		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000331018	ENST00000377081		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000331018	ENST00000465635		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000266254	ENST00000377093		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000266254	ENST00000263934		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000266254	ENST00000377086		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000266254	ENST00000377083		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000266254	ENST00000377081		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
5CDS-intron	ENST00000266254	ENST00000465635		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
intron-intron	ENST00000445824	ENST00000377093		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
intron-intron	ENST00000445824	ENST00000263934		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
intron-intron	ENST00000445824	ENST00000377086		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
intron-intron	ENST00000445824	ENST00000377083		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
intron-intron	ENST00000445824	ENST00000377081		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
intron-intron	ENST00000445824	ENST00000465635		TCGA	RV	SKCM	TCGA-EB-A431-01A	TTLL1	chr22	43442416	-	KIF1B	chr1	10394578	+
Frame-shit	ENST00000262376	ENST00000224337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000262376	ENST00000371176		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000262376	ENST00000427367		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000262376	ENST00000413476		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000262376	ENST00000495266		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000545171	ENST00000224337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000545171	ENST00000371176		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000545171	ENST00000427367		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000545171	ENST00000413476		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000545171	ENST00000495266		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000590769	ENST00000224337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000590769	ENST00000371176		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000590769	ENST00000427367		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000590769	ENST00000413476		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000590769	ENST00000495266		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000396658	ENST00000224337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000396658	ENST00000371176		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000396658	ENST00000427367		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000396658	ENST00000413476		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000396658	ENST00000495266		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000585857	ENST00000224337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000585857	ENST00000371176		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000585857	ENST00000427367		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000585857	ENST00000413476		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
intron-3CDS	ENST00000585857	ENST00000495266		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	UBN1	chr16	4927475	+	BLNK	chr10	98006805	-
Frame-shit	ENST00000520539	ENST00000372851		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
Frame-shit	ENST00000520539	ENST00000541604		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
Frame-shit	ENST00000220959	ENST00000372851		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
Frame-shit	ENST00000220959	ENST00000541604		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
intron-3CDS	ENST00000518205	ENST00000372851		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
intron-3CDS	ENST00000518205	ENST00000541604		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
Frame-shit	ENST00000521922	ENST00000372851		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
Frame-shit	ENST00000521922	ENST00000541604		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
5UTR-3CDS	ENST00000519528	ENST00000372851		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
5UTR-3CDS	ENST00000519528	ENST00000541604		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	UBR5	chr8	103305833	-	RIMS4	chr20	43400057	-
5UTR-3CDS	ENST00000274030	ENST00000307128		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	USP53	chr4	120138828	+	MYOZ2	chr4	120107121	+
intron-3CDS	ENST00000450251	ENST00000307128		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	USP53	chr4	120138828	+	MYOZ2	chr4	120107121	+
3UTR-3CDS	ENST00000510737	ENST00000307128		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	USP53	chr4	120138828	+	MYOZ2	chr4	120107121	+
Frame-shit	ENST00000307179	ENST00000358731		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
5CDS-5UTR	ENST00000307179	ENST00000380675		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
Frame-shit	ENST00000433963	ENST00000358731		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
5CDS-5UTR	ENST00000433963	ENST00000380675		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
Frame-shit	ENST00000396444	ENST00000358731		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
5CDS-5UTR	ENST00000396444	ENST00000380675		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
Frame-shit	ENST00000425032	ENST00000358731		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
5CDS-5UTR	ENST00000425032	ENST00000380675		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
intron-3CDS	ENST00000558892	ENST00000358731		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
intron-5UTR	ENST00000558892	ENST00000380675		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	USP8	chr15	50769696	+	BDP1	chr5	70786811	+
Frame-shit	ENST00000355653	ENST00000371817		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	VAT1	chr17	41166624	-	COL5A1	chr9	137533620	+
5CDS-intron	ENST00000355653	ENST00000464187		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	VAT1	chr17	41166624	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000587173	ENST00000371817		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	VAT1	chr17	41166624	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000587173	ENST00000464187		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	VAT1	chr17	41166624	-	COL5A1	chr9	137533620	+
intron-3CDS	ENST00000420567	ENST00000371817		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	VAT1	chr17	41166624	-	COL5A1	chr9	137533620	+
intron-intron	ENST00000420567	ENST00000464187		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	VAT1	chr17	41166624	-	COL5A1	chr9	137533620	+
5CDS-5UTR	ENST00000359154	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
5CDS-5UTR	ENST00000448661	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
5CDS-5UTR	ENST00000569174	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
5CDS-5UTR	ENST00000356003	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
intron-5UTR	ENST00000544162	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
intron-5UTR	ENST00000542271	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
intron-5UTR	ENST00000568684	ENST00000262525		TCGA	RV	SKCM	TCGA-ER-A196-01A	WWP2	chr16	69820983	+	ZNF629	chr16	30795836	-
Frame-shit	ENST00000465804	ENST00000361525		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000366940		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000361395		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000366938		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000359162		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000493603		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000463665		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000487276		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000465804	ENST00000493748		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000465804	ENST00000471371		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000465804	ENST00000391890		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000465804	ENST00000366937		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000465804	ENST00000408911		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000465804	ENST00000360012		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000361525		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000366940		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000361395		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000366938		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000359162		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000493603		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000463665		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000487276		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000360632	ENST00000493748		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000360632	ENST00000471371		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000360632	ENST00000391890		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000360632	ENST00000366937		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000360632	ENST00000408911		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000360632	ENST00000360012		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000361525		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000366940		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000361395		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000366938		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000359162		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000493603		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000463665		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000487276		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000467467	ENST00000493748		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000467467	ENST00000471371		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000467467	ENST00000391890		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000467467	ENST00000366937		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000467467	ENST00000408911		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
5CDS-intron	ENST00000467467	ENST00000360012		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000361525		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000366940		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000361395		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000366938		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000359162		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000493603		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000463665		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000487276		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-3CDS	ENST00000474080	ENST00000493748		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-intron	ENST00000474080	ENST00000471371		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-intron	ENST00000474080	ENST00000391890		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-intron	ENST00000474080	ENST00000366937		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-intron	ENST00000474080	ENST00000408911		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
intron-intron	ENST00000474080	ENST00000360012		TCGA	RV	SKCM	TCGA-WE-AAA4-06A	WWTR1	chr3	149290651	-	ESRRG	chr1	216741440	-
Frame-shit	ENST00000334512	ENST00000017003		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	ZMIZ1	chr10	80976031	+	XYLT2	chr17	48430991	+
Frame-shit	ENST00000334512	ENST00000507602		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	ZMIZ1	chr10	80976031	+	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000478357	ENST00000017003		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	ZMIZ1	chr10	80976031	+	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000478357	ENST00000507602		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	ZMIZ1	chr10	80976031	+	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000446377	ENST00000017003		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	ZMIZ1	chr10	80976031	+	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000446377	ENST00000507602		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	ZMIZ1	chr10	80976031	+	XYLT2	chr17	48430991	+
In-frame	ENST00000324461	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
intron-3CDS	ENST00000588797	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
3UTR-3CDS	ENST00000586976	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
intron-3CDS	ENST00000590950	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
intron-3CDS	ENST00000593268	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
Frame-shit	ENST00000593164	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
Frame-shit	ENST00000310738	ENST00000376650		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF283	chr19	44341331	+	DPRX	chr19	54137785	+
intron-5UTR	ENST00000339656	ENST00000375918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000339656	ENST00000375920		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000339656	ENST00000375916		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000452949		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000416324		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000430282		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000426401		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000439902		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000426800		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000425856		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000422771		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000441436		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000419996		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000400157		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000383438		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000440956		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000443975		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000436931		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000430238		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000425177		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000339656	ENST00000432598		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000423137	ENST00000375918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000423137	ENST00000375920		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000423137	ENST00000375916		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000452949		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000416324		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000430282		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000426401		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000439902		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000426800		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000425856		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000422771		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000441436		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000419996		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000400157		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000383438		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000440956		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000443975		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000436931		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000430238		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000425177		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000423137	ENST00000432598		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000419854	ENST00000375918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000419854	ENST00000375920		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000419854	ENST00000375916		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000452949		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000416324		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000430282		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000426401		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000439902		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000426800		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000425856		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000422771		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000441436		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000419996		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000400157		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000383438		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000440956		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000443975		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000436931		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000430238		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000425177		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000419854	ENST00000432598		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000596433	ENST00000375918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000596433	ENST00000375920		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-5UTR	ENST00000596433	ENST00000375916		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000452949		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000416324		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000430282		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000426401		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000439902		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000426800		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000425856		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000422771		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000441436		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000419996		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000400157		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000383438		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000440956		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000443975		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000436931		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000430238		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000425177		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
intron-intron	ENST00000596433	ENST00000432598		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZNF587	chr19	58331313	+	APOM	chr6	31624249	+
5CDS-5UTR	ENST00000392038	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000392038	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000392038	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000424901	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000424901	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-intron	ENST00000424901	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000311278	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000311278	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-intron	ENST00000311278	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000579047	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000579047	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-intron	ENST00000579047	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000581582	ENST00000228741		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000581582	ENST00000552142		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
intron-intron	ENST00000581582	ENST00000549529		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	AKT2	chr19	40736224	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000389048	ENST00000487143		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	ALK	chr2	29940444	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000389048	ENST00000355999		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	ALK	chr2	29940444	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000431873	ENST00000487143		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	ALK	chr2	29940444	-	STK39	chr2	169038600	-
5CDS-intron	ENST00000431873	ENST00000355999		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	ALK	chr2	29940444	-	STK39	chr2	169038600	-
intron-intron	ENST00000498037	ENST00000487143		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	ALK	chr2	29940444	-	STK39	chr2	169038600	-
intron-intron	ENST00000498037	ENST00000355999		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	ALK	chr2	29940444	-	STK39	chr2	169038600	-
In-frame	ENST00000255194	ENST00000325324		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
In-frame	ENST00000255194	ENST00000409296		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
5CDS-intron	ENST00000255194	ENST00000409534		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
5CDS-intron	ENST00000255194	ENST00000512177		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-3CDS	ENST00000519295	ENST00000325324		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-3CDS	ENST00000519295	ENST00000409296		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-intron	ENST00000519295	ENST00000409534		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-intron	ENST00000519295	ENST00000512177		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-3CDS	ENST00000523204	ENST00000325324		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-3CDS	ENST00000523204	ENST00000409296		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-intron	ENST00000523204	ENST00000409534		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-intron	ENST00000523204	ENST00000512177		TCGA	RV	SKCM	TCGA-D3-A51N-06A	AP3B1	chr5	77590276	-	IPO11	chr5	61762958	+
intron-3CDS	ENST00000446450	ENST00000288602		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	ATG7	chr3	11468400	+	BRAF	chr7	140487384	-
In-frame	ENST00000354956	ENST00000288602		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	ATG7	chr3	11468400	+	BRAF	chr7	140487384	-
In-frame	ENST00000354449	ENST00000288602		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	ATG7	chr3	11468400	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000469654	ENST00000288602		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	ATG7	chr3	11468400	+	BRAF	chr7	140487384	-
5CDS-5UTR	ENST00000273859	ENST00000538690		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-intron	ENST00000273859	ENST00000322139		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000273859	ENST00000355813		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000273859	ENST00000332647		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000504445	ENST00000538690		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-intron	ENST00000504445	ENST00000322139		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000504445	ENST00000355813		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000504445	ENST00000332647		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-5UTR	ENST00000512393	ENST00000538690		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-intron	ENST00000512393	ENST00000322139		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-5UTR	ENST00000512393	ENST00000355813		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-5UTR	ENST00000512393	ENST00000332647		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000273859	ENST00000538690		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-intron	ENST00000273859	ENST00000322139		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000273859	ENST00000355813		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000273859	ENST00000332647		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000504445	ENST00000538690		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-intron	ENST00000504445	ENST00000322139		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000504445	ENST00000355813		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
5CDS-5UTR	ENST00000504445	ENST00000332647		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-5UTR	ENST00000512393	ENST00000538690		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-intron	ENST00000512393	ENST00000322139		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-5UTR	ENST00000512393	ENST00000355813		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
intron-5UTR	ENST00000512393	ENST00000332647		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	ATP10D	chr4	47538955	+	FAM133A	chrX	92953396	+
Frame-shit	ENST00000373344	ENST00000358075		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
5CDS-intron	ENST00000373344	ENST00000373336		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
Frame-shit	ENST00000395603	ENST00000358075		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
5CDS-intron	ENST00000395603	ENST00000373336		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
5UTR-3CDS	ENST00000480283	ENST00000358075		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
5UTR-intron	ENST00000480283	ENST00000373336		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
In-frame	ENST00000373341	ENST00000358075		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
5CDS-intron	ENST00000373341	ENST00000373336		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	ATRX	chrX	76972608	-	MAGT1	chrX	77112994	-
In-frame	ENST00000460680	ENST00000356770		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000394830		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000296302		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000337303		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000410007		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000409057		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000409114		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000460680	ENST00000409767		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000356770		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000394830		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000296302		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000337303		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000410007		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000409057		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000409114		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
In-frame	ENST00000296288	ENST00000409767		TCGA	RV	SKCM	TCGA-ER-A3ES-06A	BAP1	chr3	52438469	-	PBRM1	chr3	52663051	-
5CDS-intron	ENST00000421745	ENST00000345662		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	BIRC6	chr2	32658872	+	SPAST	chr2	32323865	+
5CDS-intron	ENST00000421745	ENST00000315285		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	BIRC6	chr2	32658872	+	SPAST	chr2	32323865	+
intron-3CDS	ENST00000458053	ENST00000447098		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
intron-3CDS	ENST00000458053	ENST00000372192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
Frame-shit	ENST00000454117	ENST00000447098		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
Frame-shit	ENST00000454117	ENST00000372192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
In-frame	ENST00000335648	ENST00000447098		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
In-frame	ENST00000335648	ENST00000372192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
intron-3CDS	ENST00000518821	ENST00000447098		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
intron-3CDS	ENST00000518821	ENST00000372192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
Frame-shit	ENST00000437367	ENST00000447098		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
Frame-shit	ENST00000437367	ENST00000372192		TCGA	RV	SKCM	TCGA-EB-A82C-01A	C1orf213	chr1	23696006	+	PTCH2	chr1	45292440	-
5UTR-3CDS	ENST00000509108	ENST00000506823		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
5UTR-3CDS	ENST00000509108	ENST00000508122		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
5UTR-intron	ENST00000509108	ENST00000457021		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
5UTR-intron	ENST00000509108	ENST00000511251		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
In-frame	ENST00000306193	ENST00000506823		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
In-frame	ENST00000306193	ENST00000508122		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
5CDS-intron	ENST00000306193	ENST00000457021		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
5CDS-intron	ENST00000306193	ENST00000511251		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000504480	ENST00000506823		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
intron-3CDS	ENST00000504480	ENST00000508122		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
intron-intron	ENST00000504480	ENST00000457021		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
intron-intron	ENST00000504480	ENST00000511251		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	CBR4	chr4	169923222	-	GALNTL6	chr4	173730512	+
5CDS-5UTR	ENST00000351231	ENST00000442092		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000351231	ENST00000266022		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000351231	ENST00000443081		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-intron	ENST00000351231	ENST00000539992		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000351231	ENST00000441115		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000351231	ENST00000422955		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-intron	ENST00000351231	ENST00000421682		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000302506	ENST00000442092		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000302506	ENST00000266022		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000302506	ENST00000443081		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-intron	ENST00000302506	ENST00000539992		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000302506	ENST00000441115		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000302506	ENST00000422955		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
5CDS-intron	ENST00000302506	ENST00000421682		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-5UTR	ENST00000459900	ENST00000442092		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-5UTR	ENST00000459900	ENST00000266022		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-5UTR	ENST00000459900	ENST00000443081		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-intron	ENST00000459900	ENST00000539992		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-3UTR	ENST00000459900	ENST00000441115		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-5UTR	ENST00000459900	ENST00000422955		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
intron-intron	ENST00000459900	ENST00000421682		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CDC25A	chr3	48224419	-	RBM6	chr3	50085678	+
Frame-shit	ENST00000528852	ENST00000532114		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
Frame-shit	ENST00000528852	ENST00000337908		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
5CDS-5UTR	ENST00000528852	ENST00000355131		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
5CDS-5UTR	ENST00000528852	ENST00000395016		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
Frame-shit	ENST00000311445	ENST00000532114		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
Frame-shit	ENST00000311445	ENST00000337908		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
5CDS-5UTR	ENST00000311445	ENST00000355131		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
5CDS-5UTR	ENST00000311445	ENST00000395016		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
3UTR-3CDS	ENST00000530519	ENST00000532114		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
3UTR-3CDS	ENST00000530519	ENST00000337908		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
3UTR-5UTR	ENST00000530519	ENST00000355131		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
3UTR-5UTR	ENST00000530519	ENST00000395016		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	CNIH2	chr11	66046008	+	MS4A4A	chr11	60059698	+
Frame-shit	ENST00000527185	ENST00000393324		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000527185	ENST00000359636		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000527185	ENST00000543262		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000527185	ENST00000323418		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
5CDS-intron	ENST00000527185	ENST00000525957		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000528682	ENST00000393324		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000528682	ENST00000359636		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000528682	ENST00000543262		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000528682	ENST00000323418		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
5CDS-intron	ENST00000528682	ENST00000525957		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000524871	ENST00000393324		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000524871	ENST00000359636		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000524871	ENST00000543262		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000524871	ENST00000323418		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
5CDS-intron	ENST00000524871	ENST00000525957		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000418526	ENST00000393324		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000418526	ENST00000359636		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000418526	ENST00000543262		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000418526	ENST00000323418		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
5CDS-intron	ENST00000418526	ENST00000525957		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000279463	ENST00000393324		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000279463	ENST00000359636		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000279463	ENST00000543262		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
Frame-shit	ENST00000279463	ENST00000323418		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
5CDS-intron	ENST00000279463	ENST00000525957		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
3UTR-3CDS	ENST00000524560	ENST00000393324		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
3UTR-3CDS	ENST00000524560	ENST00000359636		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
3UTR-3CDS	ENST00000524560	ENST00000543262		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
3UTR-3CDS	ENST00000524560	ENST00000323418		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
3UTR-intron	ENST00000524560	ENST00000525957		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	CNTN5	chr11	100126650	+	ME3	chr11	86270865	-
5CDS-intron	ENST00000343933	ENST00000277198		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000343933	ENST00000297979		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000343933	ENST00000375315		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000343933	ENST00000395357		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000343933	ENST00000425634		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000343933	ENST00000433691		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000343933	ENST00000473778		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000277198		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000297979		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000375315		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000395357		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000425634		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000433691		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
5CDS-intron	ENST00000375077	ENST00000473778		TCGA	RV	SKCM	TCGA-ER-A19E-06A	CORO2A	chr9	100919742	-	C9orf3	chr9	97767440	+
intron-3CDS	ENST00000450751	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000450751	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000450751	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000450751	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000563800	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000563800	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000563800	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000563800	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000398591	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000398591	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000398591	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000398591	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000562019	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000562019	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000562019	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000562019	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000423133	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000423133	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000423133	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000423133	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
Frame-shit	ENST00000568128	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
5CDS-intron	ENST00000568128	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
5CDS-intron	ENST00000568128	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
5CDS-3UTR	ENST00000568128	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000564522	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000564522	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000564522	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000564522	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000261723	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000261723	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000261723	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000261723	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000568757	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000568757	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000568757	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000568757	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000398592	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000398592	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000398592	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000398592	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3CDS	ENST00000563519	ENST00000420329		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000563519	ENST00000560098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-intron	ENST00000563519	ENST00000268184		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
intron-3UTR	ENST00000563519	ENST00000558619		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83316607	-	CRTC3	chr15	91150610	+
In-frame	ENST00000303052	ENST00000300057		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CSNK1G1	chr15	64592518	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000303052	ENST00000559894		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CSNK1G1	chr15	64592518	-	MESP1	chr15	90293458	-
In-frame	ENST00000607537	ENST00000300057		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CSNK1G1	chr15	64592518	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000607537	ENST00000559894		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CSNK1G1	chr15	64592518	-	MESP1	chr15	90293458	-
In-frame	ENST00000303032	ENST00000300057		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CSNK1G1	chr15	64592518	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000303032	ENST00000559894		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	CSNK1G1	chr15	64592518	-	MESP1	chr15	90293458	-
Frame-shit	ENST00000304623	ENST00000360453		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
Frame-shit	ENST00000304623	ENST00000394320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000304623	ENST00000461780		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000304623	ENST00000309241		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000304623	ENST00000403750		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
Frame-shit	ENST00000359640	ENST00000360453		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
Frame-shit	ENST00000359640	ENST00000394320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000359640	ENST00000461780		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000359640	ENST00000309241		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000359640	ENST00000403750		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
In-frame	ENST00000511377	ENST00000360453		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
In-frame	ENST00000511377	ENST00000394320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000511377	ENST00000461780		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000511377	ENST00000309241		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000511377	ENST00000403750		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
In-frame	ENST00000458100	ENST00000360453		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
In-frame	ENST00000458100	ENST00000394320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000458100	ENST00000461780		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000458100	ENST00000309241		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000458100	ENST00000403750		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
In-frame	ENST00000503622	ENST00000360453		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
In-frame	ENST00000503622	ENST00000394320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000503622	ENST00000461780		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000503622	ENST00000309241		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5CDS-intron	ENST00000503622	ENST00000403750		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5UTR-3CDS	ENST00000495388	ENST00000360453		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5UTR-3CDS	ENST00000495388	ENST00000394320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5UTR-intron	ENST00000495388	ENST00000461780		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5UTR-intron	ENST00000495388	ENST00000309241		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
5UTR-intron	ENST00000495388	ENST00000403750		TCGA	RV	SKCM	TCGA-D3-A51N-06A	CTNND2	chr5	11082808	-	PPARGC1B	chr5	149199996	+
3UTR-intron	ENST00000313077	ENST00000371754		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000313077	ENST00000469991		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000313077	ENST00000371752		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000313077	ENST00000396105		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000560848	ENST00000371754		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000560848	ENST00000469991		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000560848	ENST00000371752		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000560848	ENST00000396105		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000435939	ENST00000371754		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-intron	ENST00000435939	ENST00000469991		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000435939	ENST00000371752		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
3UTR-3UTR	ENST00000435939	ENST00000396105		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	CYFIP1	chr15	23003602	+	ZNFX1	chr20	47863418	-
intron-3CDS	ENST00000357232	ENST00000309733		TCGA	RV	SKCM	TCGA-W3-A825-06A	DCHS2	chr4	155410456	-	C4orf32	chr4	113107849	+
Frame-shit	ENST00000339452	ENST00000309733		TCGA	RV	SKCM	TCGA-W3-A825-06A	DCHS2	chr4	155410456	-	C4orf32	chr4	113107849	+
intron-3CDS	ENST00000507542	ENST00000309733		TCGA	RV	SKCM	TCGA-W3-A825-06A	DCHS2	chr4	155410456	-	C4orf32	chr4	113107849	+
Frame-shit	ENST00000456341	ENST00000309733		TCGA	RV	SKCM	TCGA-W3-A825-06A	DCHS2	chr4	155410456	-	C4orf32	chr4	113107849	+
Frame-shit	ENST00000443500	ENST00000309733		TCGA	RV	SKCM	TCGA-W3-A825-06A	DCHS2	chr4	155410456	-	C4orf32	chr4	113107849	+
5CDS-5UTR	ENST00000537045	ENST00000231357		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000537045	ENST00000505790		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000537045	ENST00000513692		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-intron	ENST00000537045	ENST00000505938		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000263196	ENST00000231357		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000263196	ENST00000505790		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000263196	ENST00000513692		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-intron	ENST00000263196	ENST00000505938		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000545799	ENST00000231357		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000545799	ENST00000505790		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-5UTR	ENST00000545799	ENST00000513692		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
5CDS-intron	ENST00000545799	ENST00000505938		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
intron-5UTR	ENST00000473832	ENST00000231357		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
intron-5UTR	ENST00000473832	ENST00000505790		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
intron-5UTR	ENST00000473832	ENST00000513692		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
intron-intron	ENST00000473832	ENST00000505938		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	DGCR2	chr22	19109641	-	IRX4	chr5	1882861	-
Frame-shit	ENST00000585892	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000585892	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
5CDS-5UTR	ENST00000585892	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000314646	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000314646	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
5CDS-5UTR	ENST00000314646	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000359692	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000359692	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
5CDS-5UTR	ENST00000359692	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000389253	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000389253	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
5CDS-5UTR	ENST00000389253	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000355667	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000355667	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
5CDS-5UTR	ENST00000355667	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000408974	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
Frame-shit	ENST00000408974	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
5CDS-5UTR	ENST00000408974	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
intron-3CDS	ENST00000591819	ENST00000253110		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
intron-3CDS	ENST00000591819	ENST00000591813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
intron-5UTR	ENST00000591819	ENST00000397881		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	DNM2	chr19	10829079	+	C19orf66	chr19	10197605	+
intron-3CDS	ENST00000585892	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-intron	ENST00000585892	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
Frame-shit	ENST00000314646	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
5CDS-intron	ENST00000314646	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-3CDS	ENST00000359692	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-intron	ENST00000359692	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
Frame-shit	ENST00000389253	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
5CDS-intron	ENST00000389253	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-3CDS	ENST00000355667	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-intron	ENST00000355667	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-3CDS	ENST00000408974	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-intron	ENST00000408974	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-3CDS	ENST00000591819	ENST00000403903		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
intron-intron	ENST00000591819	ENST00000403352		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10942579	+	ZGLP1	chr19	10420556	-
Frame-shit	ENST00000415912	ENST00000410048		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
5CDS-3UTR	ENST00000415912	ENST00000409337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
5CDS-3UTR	ENST00000415912	ENST00000335282		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3CDS	ENST00000357071	ENST00000410048		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000357071	ENST00000409337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000357071	ENST00000335282		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3CDS	ENST00000374893	ENST00000410048		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000374893	ENST00000409337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000374893	ENST00000335282		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3CDS	ENST00000436918	ENST00000410048		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000436918	ENST00000409337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000436918	ENST00000335282		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3CDS	ENST00000264205	ENST00000410048		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000264205	ENST00000409337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000264205	ENST00000335282		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3CDS	ENST00000528294	ENST00000410048		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000528294	ENST00000409337		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
intron-3UTR	ENST00000528294	ENST00000335282		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21671869	-	FAM183A	chr1	43616432	+
5CDS-intron	ENST00000220325	ENST00000299092		TCGA	RV	SKCM	TCGA-EB-A550-01A	EHD4	chr15	42264457	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000220325	ENST00000561100		TCGA	RV	SKCM	TCGA-EB-A550-01A	EHD4	chr15	42264457	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000220325	ENST00000543580		TCGA	RV	SKCM	TCGA-EB-A550-01A	EHD4	chr15	42264457	-	GPR176	chr15	40099459	-
5CDS-5UTR	ENST00000220325	ENST00000560729		TCGA	RV	SKCM	TCGA-EB-A550-01A	EHD4	chr15	42264457	-	GPR176	chr15	40099459	-
In-frame	ENST00000325157	ENST00000382968		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
In-frame	ENST00000325157	ENST00000433731		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
5CDS-intron	ENST00000325157	ENST00000333673		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
5CDS-intron	ENST00000325157	ENST00000505730		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
intron-3CDS	ENST00000490326	ENST00000382968		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
intron-3CDS	ENST00000490326	ENST00000433731		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
intron-intron	ENST00000490326	ENST00000333673		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
intron-intron	ENST00000490326	ENST00000505730		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	ENTHD1	chr22	40257770	-	RNF212	chr4	1067450	-
In-frame	ENST00000557325	ENST00000264833		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000557325	ENST00000590841		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
Frame-shit	ENST00000334696	ENST00000264833		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
5CDS-intron	ENST00000334696	ENST00000590841		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000556242	ENST00000264833		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
intron-intron	ENST00000556242	ENST00000590841		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
intron-3CDS	ENST00000554664	ENST00000264833		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
intron-intron	ENST00000554664	ENST00000590841		TCGA	RV	SKCM	TCGA-FS-A1ZP-06A	ENTPD5	chr14	74453517	-	OLFM2	chr19	9971470	-
Frame-shit	ENST00000375110	ENST00000280886		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
Frame-shit	ENST00000375110	ENST00000381496		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
5CDS-intron	ENST00000375110	ENST00000540204		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-3CDS	ENST00000319778	ENST00000280886		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-3CDS	ENST00000319778	ENST00000381496		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-intron	ENST00000319778	ENST00000540204		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-3CDS	ENST00000263062	ENST00000280886		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-3CDS	ENST00000263062	ENST00000381496		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-intron	ENST00000263062	ENST00000540204		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-3CDS	ENST00000480402	ENST00000280886		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-3CDS	ENST00000480402	ENST00000381496		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
intron-intron	ENST00000480402	ENST00000540204		TCGA	RV	SKCM	TCGA-EB-A5UN-06A	EPC1	chr10	32667419	-	DIP2C	chr10	465139	-
5CDS-intron	ENST00000455140	ENST00000455427		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000455140	ENST00000427117		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000455140	ENST00000333987		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000455140	ENST00000415168		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000455140	ENST00000586353		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000248070	ENST00000455427		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000248070	ENST00000427117		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000248070	ENST00000333987		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000248070	ENST00000415168		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000248070	ENST00000586353		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000535753	ENST00000455427		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000535753	ENST00000427117		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000535753	ENST00000333987		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000535753	ENST00000415168		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000535753	ENST00000586353		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000594975	ENST00000455427		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000594975	ENST00000427117		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000594975	ENST00000333987		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000594975	ENST00000415168		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000594975	ENST00000586353		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000602009	ENST00000455427		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000602009	ENST00000427117		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000602009	ENST00000333987		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000602009	ENST00000415168		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000602009	ENST00000586353		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000597937	ENST00000455427		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000597937	ENST00000427117		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-5UTR	ENST00000597937	ENST00000333987		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000597937	ENST00000415168		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
5CDS-intron	ENST00000597937	ENST00000586353		TCGA	RV	SKCM	TCGA-ER-A19M-06A	EPS15L1	chr19	16524584	-	ZNF568	chr19	37413488	+
intron-3CDS	ENST00000522706	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
intron-intron	ENST00000522706	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
intron-intron	ENST00000522706	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
intron-intron	ENST00000522706	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
intron-intron	ENST00000522706	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
intron-intron	ENST00000522706	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
In-frame	ENST00000262109	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000262109	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000262109	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000262109	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000262109	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000262109	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-3CDS	ENST00000518277	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000518277	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000518277	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000518277	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000518277	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-intron	ENST00000518277	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	ERICH1	chr8	642478	-	PTPRR	chr12	71286757	-
5UTR-3CDS	ENST00000230449	ENST00000297153		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000230449	ENST00000434837		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000230449	ENST00000505425		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-intron	ENST00000230449	ENST00000510077		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000448181	ENST00000297153		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000448181	ENST00000434837		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000448181	ENST00000505425		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-intron	ENST00000448181	ENST00000510077		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000475028	ENST00000297153		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000475028	ENST00000434837		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-3CDS	ENST00000475028	ENST00000505425		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
5UTR-intron	ENST00000475028	ENST00000510077		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	EXOC2	chr6	693019	-	MDGA1	chr6	37612425	-
In-frame	ENST00000272427	ENST00000286186		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
Frame-shit	ENST00000272427	ENST00000360132		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
In-frame	ENST00000272427	ENST00000272879		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5CDS-intron	ENST00000272427	ENST00000374650		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5CDS-intron	ENST00000272427	ENST00000346817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5CDS-intron	ENST00000272427	ENST00000313728		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5CDS-intron	ENST00000272427	ENST00000448480		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5CDS-3UTR	ENST00000272427	ENST00000492363		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-3CDS	ENST00000490919	ENST00000286186		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-3CDS	ENST00000490919	ENST00000360132		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-3CDS	ENST00000490919	ENST00000272879		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-intron	ENST00000490919	ENST00000374650		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-intron	ENST00000490919	ENST00000346817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-intron	ENST00000490919	ENST00000313728		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-intron	ENST00000490919	ENST00000448480		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5UTR-3UTR	ENST00000490919	ENST00000492363		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-3CDS	ENST00000410104	ENST00000286186		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-3CDS	ENST00000410104	ENST00000360132		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-3CDS	ENST00000410104	ENST00000272879		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-intron	ENST00000410104	ENST00000374650		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-intron	ENST00000410104	ENST00000346817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-intron	ENST00000410104	ENST00000313728		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-intron	ENST00000410104	ENST00000448480		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
intron-3UTR	ENST00000410104	ENST00000492363		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	EXOC6B	chr2	72562076	-	CASP10	chr2	202072798	+
5CDS-5UTR	ENST00000402357	ENST00000361362		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000402357	ENST00000503510		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000402357	ENST00000523286		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000402357	ENST00000520301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-5UTR	ENST00000358295	ENST00000361362		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000358295	ENST00000503510		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000358295	ENST00000523286		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000358295	ENST00000520301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
3UTR-5UTR	ENST00000473898	ENST00000361362		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
3UTR-intron	ENST00000473898	ENST00000503510		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
3UTR-intron	ENST00000473898	ENST00000523286		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
3UTR-intron	ENST00000473898	ENST00000520301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-5UTR	ENST00000406880	ENST00000361362		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000406880	ENST00000503510		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000406880	ENST00000523286		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
5CDS-intron	ENST00000406880	ENST00000520301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZFP2	chr5	178339585	+
intron-3CDS	ENST00000311172	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000311172	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000311172	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000311172	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000311172	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409314	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409314	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409314	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409314	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409314	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409418	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409418	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409418	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409418	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409418	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000458644	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000458644	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000458644	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000458644	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000458644	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000409853	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000409853	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000409853	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000409853	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000409853	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000409263	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000409263	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000409263	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000409263	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000409263	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000415807	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000415807	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000415807	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000336824	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000336824	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000336824	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000416957	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000416957	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000416957	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000392699	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000392699	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000392699	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000421757	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000421757	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000421757	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000423424	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000423424	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
5CDS-intron	ENST00000423424	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
intron-intron	ENST00000476794	ENST00000396392		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
intron-intron	ENST00000476794	ENST00000396396		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
intron-intron	ENST00000476794	ENST00000604870		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	PGM5	chr9	71094334	+
In-frame	ENST00000522566	ENST00000355875		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000522566	ENST00000366541		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000522566	ENST00000343783		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000522566	ENST00000391846		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000522566	ENST00000496361		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000358755	ENST00000355875		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000358755	ENST00000366541		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000358755	ENST00000343783		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000358755	ENST00000391846		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000358755	ENST00000496361		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000523739	ENST00000355875		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
In-frame	ENST00000523739	ENST00000366541		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000523739	ENST00000343783		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000523739	ENST00000391846		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000523739	ENST00000496361		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
Frame-shit	ENST00000540287	ENST00000355875		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
Frame-shit	ENST00000540287	ENST00000366541		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000540287	ENST00000343783		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-5UTR	ENST00000540287	ENST00000391846		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
5CDS-intron	ENST00000540287	ENST00000496361		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104312512	+	SDCCAG8	chr1	243449574	+
intron-3CDS	ENST00000379284	ENST00000503581		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-3CDS	ENST00000379284	ENST00000370621		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-3CDS	ENST00000379284	ENST00000370616		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379284	ENST00000393380		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379284	ENST00000342421		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379284	ENST00000370618		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379284	ENST00000486069		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
Frame-shit	ENST00000379287	ENST00000503581		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
Frame-shit	ENST00000379287	ENST00000370621		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
Frame-shit	ENST00000379287	ENST00000370616		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000379287	ENST00000393380		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000379287	ENST00000342421		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000379287	ENST00000370618		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000379287	ENST00000486069		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
Frame-shit	ENST00000603223	ENST00000503581		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
Frame-shit	ENST00000603223	ENST00000370621		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
Frame-shit	ENST00000603223	ENST00000370616		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000603223	ENST00000393380		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000603223	ENST00000342421		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000603223	ENST00000370618		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
5CDS-intron	ENST00000603223	ENST00000486069		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-3CDS	ENST00000379278	ENST00000503581		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-3CDS	ENST00000379278	ENST00000370621		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-3CDS	ENST00000379278	ENST00000370616		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379278	ENST00000393380		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379278	ENST00000342421		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379278	ENST00000370618		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
intron-intron	ENST00000379278	ENST00000486069		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	GFOD1	chr6	13486870	-	EYS	chr6	65532715	-
In-frame	ENST00000396594	ENST00000373886		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-intron	ENST00000396594	ENST00000263103		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-3UTR	ENST00000396594	ENST00000476684		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
Frame-shit	ENST00000539815	ENST00000373886		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-intron	ENST00000539815	ENST00000263103		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-3UTR	ENST00000539815	ENST00000476684		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
In-frame	ENST00000543356	ENST00000373886		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-intron	ENST00000543356	ENST00000263103		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-3UTR	ENST00000543356	ENST00000476684		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
In-frame	ENST00000539208	ENST00000373886		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-intron	ENST00000539208	ENST00000263103		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-3UTR	ENST00000539208	ENST00000476684		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
Frame-shit	ENST00000447283	ENST00000373886		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-intron	ENST00000447283	ENST00000263103		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-3UTR	ENST00000447283	ENST00000476684		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
Frame-shit	ENST00000377902	ENST00000373886		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-intron	ENST00000377902	ENST00000263103		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
5CDS-3UTR	ENST00000377902	ENST00000476684		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	GNE	chr9	36246028	-	BICC1	chr10	60380615	+
Frame-shit	ENST00000315266	ENST00000332981		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000315266	ENST00000555082		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000315266	ENST00000556245		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000478722	ENST00000332981		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000478722	ENST00000555082		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000478722	ENST00000556245		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000459628	ENST00000332981		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000459628	ENST00000555082		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000459628	ENST00000556245		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000543237	ENST00000332981		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000543237	ENST00000555082		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000543237	ENST00000556245		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000305960	ENST00000332981		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000305960	ENST00000555082		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000305960	ENST00000556245		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
intron-3CDS	ENST00000544752	ENST00000332981		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
intron-5UTR	ENST00000544752	ENST00000555082		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
intron-intron	ENST00000544752	ENST00000556245		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	GPHN	chr14	66975309	+	PRKCH	chr14	61857943	+
In-frame	ENST00000327946	ENST00000395795		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000327946	ENST00000374429		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000327946	ENST00000395793		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000327946	ENST00000374426		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000327946	ENST00000343575		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000327946	ENST00000395794		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
5CDS-intron	ENST00000327946	ENST00000496375		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-3CDS	ENST00000536331	ENST00000395795		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000536331	ENST00000374429		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000536331	ENST00000395793		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000536331	ENST00000374426		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000536331	ENST00000343575		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000536331	ENST00000395794		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000536331	ENST00000496375		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-3CDS	ENST00000552278	ENST00000395795		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000552278	ENST00000374429		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000552278	ENST00000395793		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000552278	ENST00000374426		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000552278	ENST00000343575		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000552278	ENST00000395794		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
intron-intron	ENST00000552278	ENST00000496375		TCGA	RV	SKCM	TCGA-ER-A19L-06A	GRID1	chr10	87675943	-	CXCL12	chr10	44793345	-
In-frame	ENST00000303230	ENST00000282469		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	HCN1	chr5	45645287	-	SPEF2	chr5	35667174	+
In-frame	ENST00000303230	ENST00000509059		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	HCN1	chr5	45645287	-	SPEF2	chr5	35667174	+
In-frame	ENST00000303230	ENST00000356031		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	HCN1	chr5	45645287	-	SPEF2	chr5	35667174	+
In-frame	ENST00000303230	ENST00000440995		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	HCN1	chr5	45645287	-	SPEF2	chr5	35667174	+
5CDS-intron	ENST00000303230	ENST00000303129		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	HCN1	chr5	45645287	-	SPEF2	chr5	35667174	+
5CDS-5UTR	ENST00000406451	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000406451	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000406451	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000401921	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000401921	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000401921	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000432645	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000432645	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000432645	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000441542	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000441542	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000441542	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000417496	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000417496	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000417496	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
3UTR-5UTR	ENST00000476135	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
3UTR-intron	ENST00000476135	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
3UTR-intron	ENST00000476135	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000405010	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000405010	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000405010	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000428307	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000428307	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000428307	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000406072	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000406072	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000406072	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000456174	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000456174	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000456174	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-5UTR	ENST00000524023	ENST00000379992		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000524023	ENST00000493941		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
5CDS-intron	ENST00000524023	ENST00000308675		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	HDAC9	chr7	18625145	+	LINGO2	chr9	28476023	-
Frame-shit	ENST00000261609	ENST00000548547		TCGA	RV	SKCM	TCGA-RP-A695-06A	HERC2	chr15	28387384	-	IGFBP6	chr12	53494496	+
Frame-shit	ENST00000261609	ENST00000301464		TCGA	RV	SKCM	TCGA-RP-A695-06A	HERC2	chr15	28387384	-	IGFBP6	chr12	53494496	+
5CDS-3UTR	ENST00000261609	ENST00000549628		TCGA	RV	SKCM	TCGA-RP-A695-06A	HERC2	chr15	28387384	-	IGFBP6	chr12	53494496	+
intron-3CDS	ENST00000563945	ENST00000548547		TCGA	RV	SKCM	TCGA-RP-A695-06A	HERC2	chr15	28387384	-	IGFBP6	chr12	53494496	+
intron-3CDS	ENST00000563945	ENST00000301464		TCGA	RV	SKCM	TCGA-RP-A695-06A	HERC2	chr15	28387384	-	IGFBP6	chr12	53494496	+
intron-3UTR	ENST00000563945	ENST00000549628		TCGA	RV	SKCM	TCGA-RP-A695-06A	HERC2	chr15	28387384	-	IGFBP6	chr12	53494496	+
3UTR-3CDS	ENST00000396634	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000396634	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-intron	ENST00000396634	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376806	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-intron	ENST00000376806	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376809	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-intron	ENST00000376809	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-3CDS	ENST00000376802	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
3UTR-intron	ENST00000376802	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000431930	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000431930	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000444289	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000444289	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551578	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000551578	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000551120	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000551120	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552193	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000552193	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000416096	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000416096	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000443552	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000443552	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000417978	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000417978	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547112	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000547112	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552498	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000552498	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549869	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000549869	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000442939	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000442939	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000457879	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000457879	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000438861	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000438861	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547271	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000547271	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000453975	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000453975	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000547522	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000547522	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383605	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000383605	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000383619	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000383619	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000549224	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000549224	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000376822	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000376822	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000456012	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000456012	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000550728	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000550728	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000450342	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000450342	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000454091	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000454091	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000488889	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000488889	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000552493	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000552493	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-3CDS	ENST00000414592	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
intron-intron	ENST00000414592	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2GD-06A	HLA-A	chr6	29913617	+	KIFC3	chr16	57805349	-
In-frame	ENST00000376705	ENST00000333274		TCGA	RV	SKCM	TCGA-D9-A6EA-06A	HS6ST3	chr13	96743823	+	EFNA5	chr5	106763210	-
In-frame	ENST00000376705	ENST00000509503		TCGA	RV	SKCM	TCGA-D9-A6EA-06A	HS6ST3	chr13	96743823	+	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000376705	ENST00000510359		TCGA	RV	SKCM	TCGA-D9-A6EA-06A	HS6ST3	chr13	96743823	+	EFNA5	chr5	106763210	-
Frame-shit	ENST00000356956	ENST00000275262		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
Frame-shit	ENST00000356956	ENST00000392127		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
Frame-shit	ENST00000356956	ENST00000453779		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
Frame-shit	ENST00000356956	ENST00000361752		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
Frame-shit	ENST00000356956	ENST00000361195		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
Frame-shit	ENST00000356956	ENST00000424802		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
intron-3CDS	ENST00000475584	ENST00000275262		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
intron-3CDS	ENST00000475584	ENST00000392127		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
intron-3CDS	ENST00000475584	ENST00000453779		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
intron-3CDS	ENST00000475584	ENST00000361752		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
intron-3CDS	ENST00000475584	ENST00000361195		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
intron-3CDS	ENST00000475584	ENST00000424802		TCGA	RV	SKCM	TCGA-EE-A29G-06A	IGF2R	chr6	160511135	+	QKI	chr6	163956014	+
Frame-shit	ENST00000159111	ENST00000302177		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	KDM4B	chr19	5144913	+	FOXA3	chr19	46375333	+
intron-3CDS	ENST00000381759	ENST00000302177		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	KDM4B	chr19	5144913	+	FOXA3	chr19	46375333	+
Frame-shit	ENST00000536461	ENST00000302177		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	KDM4B	chr19	5144913	+	FOXA3	chr19	46375333	+
intron-3CDS	ENST00000592175	ENST00000302177		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	KDM4B	chr19	5144913	+	FOXA3	chr19	46375333	+
In-frame	ENST00000355849	ENST00000262219		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
In-frame	ENST00000355849	ENST00000419625		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
5CDS-intron	ENST00000355849	ENST00000519045		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
intron-3CDS	ENST00000520981	ENST00000262219		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
intron-3CDS	ENST00000520981	ENST00000419625		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
intron-intron	ENST00000520981	ENST00000519045		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
intron-3CDS	ENST00000522578	ENST00000262219		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
intron-3CDS	ENST00000522578	ENST00000419625		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
intron-intron	ENST00000522578	ENST00000519045		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	KHDRBS3	chr8	136470197	+	ANXA13	chr8	124714976	-
In-frame	ENST00000392272	ENST00000368046		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
Frame-shit	ENST00000392272	ENST00000368045		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
In-frame	ENST00000368173	ENST00000368046		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
Frame-shit	ENST00000368173	ENST00000368045		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
5UTR-3CDS	ENST00000360089	ENST00000368046		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
5UTR-3CDS	ENST00000360089	ENST00000368045		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
In-frame	ENST00000359209	ENST00000368046		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
Frame-shit	ENST00000359209	ENST00000368045		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
In-frame	ENST00000416935	ENST00000368046		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
Frame-shit	ENST00000416935	ENST00000368045		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
intron-3CDS	ENST00000368172	ENST00000368046		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
intron-3CDS	ENST00000368172	ENST00000368045		TCGA	RV	SKCM	TCGA-FR-A3YN-06A	KIRREL	chr1	157963518	+	CD48	chr1	160654979	-
In-frame	ENST00000309446	ENST00000406610		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000309446	ENST00000462231		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000309446	ENST00000349953		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000309446	ENST00000358768		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000309446	ENST00000351153		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
5CDS-intron	ENST00000309446	ENST00000488622		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000421199	ENST00000406610		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000421199	ENST00000462231		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000421199	ENST00000349953		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000421199	ENST00000358768		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000421199	ENST00000351153		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
5CDS-intron	ENST00000421199	ENST00000488622		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000423015	ENST00000406610		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000423015	ENST00000462231		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000423015	ENST00000349953		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000423015	ENST00000358768		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000423015	ENST00000351153		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-intron	ENST00000423015	ENST00000488622		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000458272	ENST00000406610		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000458272	ENST00000462231		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000458272	ENST00000349953		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000458272	ENST00000358768		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000458272	ENST00000351153		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-intron	ENST00000458272	ENST00000488622		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000412414	ENST00000406610		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000412414	ENST00000462231		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000412414	ENST00000349953		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000412414	ENST00000358768		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000412414	ENST00000351153		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
5CDS-intron	ENST00000412414	ENST00000488622		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000467833	ENST00000406610		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000467833	ENST00000462231		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000467833	ENST00000349953		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000467833	ENST00000358768		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-3CDS	ENST00000467833	ENST00000351153		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
intron-intron	ENST00000467833	ENST00000488622		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	KLF7	chr2	207988498	-	PARD3B	chr2	205912304	+
In-frame	ENST00000535741	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	LRBA	chr4	151656410	-	TBC1D9	chr4	141583261	-
Frame-shit	ENST00000510413	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	LRBA	chr4	151656410	-	TBC1D9	chr4	141583261	-
intron-3CDS	ENST00000503716	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	LRBA	chr4	151656410	-	TBC1D9	chr4	141583261	-
In-frame	ENST00000357115	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	LRBA	chr4	151656410	-	TBC1D9	chr4	141583261	-
Frame-shit	ENST00000507224	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	LRBA	chr4	151656410	-	TBC1D9	chr4	141583261	-
Frame-shit	ENST00000539563	ENST00000425327		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
Frame-shit	ENST00000539563	ENST00000393775		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
Frame-shit	ENST00000539563	ENST00000489689		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
Frame-shit	ENST00000539563	ENST00000354673		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
Frame-shit	ENST00000539563	ENST00000441144		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
Frame-shit	ENST00000539563	ENST00000491903		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
5CDS-intron	ENST00000539563	ENST00000459718		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000490035	ENST00000425327		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000490035	ENST00000393775		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000490035	ENST00000489689		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000490035	ENST00000354673		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000490035	ENST00000441144		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000490035	ENST00000491903		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-intron	ENST00000490035	ENST00000459718		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000498645	ENST00000425327		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000498645	ENST00000393775		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000498645	ENST00000489689		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000498645	ENST00000354673		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000498645	ENST00000441144		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-3CDS	ENST00000498645	ENST00000491903		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
intron-intron	ENST00000498645	ENST00000459718		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	LSAMP	chr3	117716029	-	IGSF11	chr3	118624565	-
In-frame	ENST00000217246	ENST00000399002		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
In-frame	ENST00000217246	ENST00000378194		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
5CDS-intron	ENST00000217246	ENST00000476791		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
In-frame	ENST00000310348	ENST00000399002		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
In-frame	ENST00000310348	ENST00000378194		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
5CDS-intron	ENST00000310348	ENST00000476791		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000464883	ENST00000399002		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000464883	ENST00000378194		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-intron	ENST00000464883	ENST00000476791		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000402914	ENST00000399002		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000402914	ENST00000378194		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-intron	ENST00000402914	ENST00000476791		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000378058	ENST00000399002		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000378058	ENST00000378194		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-intron	ENST00000378058	ENST00000476791		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000407045	ENST00000399002		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-3CDS	ENST00000407045	ENST00000378194		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
intron-intron	ENST00000407045	ENST00000476791		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MACROD2	chr20	14066374	+	SPTLC3	chr20	13090759	+
In-frame	ENST00000541730	ENST00000264870		TCGA	RV	SKCM	TCGA-D3-A51G-06A	MBOAT1	chr6	20113107	-	F13A1	chr6	6225093	-
In-frame	ENST00000324607	ENST00000264870		TCGA	RV	SKCM	TCGA-D3-A51G-06A	MBOAT1	chr6	20113107	-	F13A1	chr6	6225093	-
intron-3CDS	ENST00000536798	ENST00000264870		TCGA	RV	SKCM	TCGA-D3-A51G-06A	MBOAT1	chr6	20113107	-	F13A1	chr6	6225093	-
Frame-shit	ENST00000328913	ENST00000382276		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
In-frame	ENST00000328913	ENST00000569227		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
Frame-shit	ENST00000473233	ENST00000382276		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
In-frame	ENST00000473233	ENST00000569227		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
Frame-shit	ENST00000447025	ENST00000382276		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
In-frame	ENST00000447025	ENST00000569227		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
Frame-shit	ENST00000414362	ENST00000382276		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
In-frame	ENST00000414362	ENST00000569227		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
intron-3CDS	ENST00000468976	ENST00000382276		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
intron-3CDS	ENST00000468976	ENST00000569227		TCGA	RV	SKCM	TCGA-EE-A29H-06A	MCF2L2	chr3	182994660	-	DMRT1	chr9	967985	+
5CDS-5UTR	ENST00000401548	ENST00000355630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000401548	ENST00000396617		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000401548	ENST00000402042		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-intron	ENST00000401548	ENST00000466278		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000401548	ENST00000407029		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000401548	ENST00000402630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540833	ENST00000355630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540833	ENST00000396617		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540833	ENST00000402042		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-intron	ENST00000540833	ENST00000466278		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540833	ENST00000407029		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540833	ENST00000402630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000400107	ENST00000355630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000400107	ENST00000396617		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000400107	ENST00000402042		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-intron	ENST00000400107	ENST00000466278		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000400107	ENST00000407029		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000400107	ENST00000402630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5UTR-5UTR	ENST00000300398	ENST00000355630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5UTR-5UTR	ENST00000300398	ENST00000396617		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5UTR-5UTR	ENST00000300398	ENST00000402042		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5UTR-intron	ENST00000300398	ENST00000466278		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5UTR-5UTR	ENST00000300398	ENST00000407029		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5UTR-5UTR	ENST00000300398	ENST00000402630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540880	ENST00000355630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540880	ENST00000396617		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540880	ENST00000402042		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-intron	ENST00000540880	ENST00000466278		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540880	ENST00000407029		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000540880	ENST00000402630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
intron-5UTR	ENST00000476893	ENST00000355630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
intron-5UTR	ENST00000476893	ENST00000396617		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
intron-5UTR	ENST00000476893	ENST00000402042		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
intron-intron	ENST00000476893	ENST00000466278		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
intron-5UTR	ENST00000476893	ENST00000407029		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
intron-5UTR	ENST00000476893	ENST00000402630		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MEI1	chr22	42159325	+	MKL1	chr22	40859290	-
Frame-shit	ENST00000258169	ENST00000377242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
Frame-shit	ENST00000258169	ENST00000377252		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
5CDS-intron	ENST00000258169	ENST00000377238		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-3CDS	ENST00000563504	ENST00000377242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-3CDS	ENST00000563504	ENST00000377252		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-intron	ENST00000563504	ENST00000377238		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-3CDS	ENST00000569021	ENST00000377242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-3CDS	ENST00000569021	ENST00000377252		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-intron	ENST00000569021	ENST00000377238		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-3CDS	ENST00000567729	ENST00000377242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-3CDS	ENST00000567729	ENST00000377252		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
intron-intron	ENST00000567729	ENST00000377238		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	MPHOSPH6	chr16	82197687	-	PLXDC2	chr10	20290704	+
5UTR-intron	ENST00000409581	ENST00000450943		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000409581	ENST00000354888		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000409581	ENST00000393108		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000409581	ENST00000393110		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000409581	ENST00000393106		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000409581	ENST00000393107		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-3UTR	ENST00000409581	ENST00000409811		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-3UTR	ENST00000409581	ENST00000425223		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000337386	ENST00000450943		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000337386	ENST00000354888		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000337386	ENST00000393108		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000337386	ENST00000393110		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000337386	ENST00000393106		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000337386	ENST00000393107		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-3UTR	ENST00000337386	ENST00000409811		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-3UTR	ENST00000337386	ENST00000425223		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000357215	ENST00000450943		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000357215	ENST00000354888		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000357215	ENST00000393108		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000357215	ENST00000393110		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000357215	ENST00000393106		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-intron	ENST00000357215	ENST00000393107		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-3UTR	ENST00000357215	ENST00000409811		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
5UTR-3UTR	ENST00000357215	ENST00000425223		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000409641	ENST00000450943		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000409641	ENST00000354888		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000409641	ENST00000393108		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000409641	ENST00000393110		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000409641	ENST00000393106		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000409641	ENST00000393107		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-3UTR	ENST00000409641	ENST00000409811		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-3UTR	ENST00000409641	ENST00000425223		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000545490	ENST00000450943		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000545490	ENST00000354888		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000545490	ENST00000393108		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000545490	ENST00000393110		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000545490	ENST00000393106		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000545490	ENST00000393107		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-3UTR	ENST00000545490	ENST00000409811		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-3UTR	ENST00000545490	ENST00000425223		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000484774	ENST00000450943		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000484774	ENST00000354888		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000484774	ENST00000393108		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000484774	ENST00000393110		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000484774	ENST00000393106		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000484774	ENST00000393107		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-3UTR	ENST00000484774	ENST00000409811		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-3UTR	ENST00000484774	ENST00000425223		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NAB1	chr2	191514086	+	STEAP3	chr2	120020633	+
intron-intron	ENST00000405201	ENST00000368715		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000405201	ENST00000481009		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000405201	ENST00000354332		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-5UTR	ENST00000405201	ENST00000368716		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000405201	ENST00000368714		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404621	ENST00000368715		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404621	ENST00000481009		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404621	ENST00000354332		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-5UTR	ENST00000404621	ENST00000368716		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404621	ENST00000368714		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404121	ENST00000368715		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404121	ENST00000481009		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404121	ENST00000354332		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-5UTR	ENST00000404121	ENST00000368716		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000404121	ENST00000368714		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000356219	ENST00000368715		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000356219	ENST00000481009		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000356219	ENST00000354332		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-5UTR	ENST00000356219	ENST00000368716		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000356219	ENST00000368714		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000397355	ENST00000368715		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000397355	ENST00000481009		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000397355	ENST00000354332		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-5UTR	ENST00000397355	ENST00000368716		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000397355	ENST00000368714		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000429285	ENST00000368715		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000429285	ENST00000481009		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000429285	ENST00000354332		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-5UTR	ENST00000429285	ENST00000368716		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
intron-intron	ENST00000429285	ENST00000368714		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	NCOR2	chr12	124831139	-	S100A4	chr1	153518278	-
Frame-shit	ENST00000368223	ENST00000356136		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
Frame-shit	ENST00000368223	ENST00000528420		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000368223	ENST00000533454		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000368223	ENST00000531818		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000368223	ENST00000532130		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000368223	ENST00000539288		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000368223	ENST00000525872		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000368223	ENST00000538870		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	NES	chr1	156638555	-	UVRAG	chr11	75694431	+
Frame-shit	ENST00000371564	ENST00000262593		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000371564	ENST00000395939		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-intron	ENST00000371564	ENST00000491469		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
In-frame	ENST00000396009	ENST00000262593		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000396009	ENST00000395939		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-intron	ENST00000396009	ENST00000491469		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
In-frame	ENST00000609943	ENST00000262593		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000609943	ENST00000395939		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-intron	ENST00000609943	ENST00000491469		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
In-frame	ENST00000610033	ENST00000262593		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000610033	ENST00000395939		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-intron	ENST00000610033	ENST00000491469		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
Frame-shit	ENST00000414705	ENST00000262593		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000414705	ENST00000395939		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-intron	ENST00000414705	ENST00000491469		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
In-frame	ENST00000609507	ENST00000262593		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-5UTR	ENST00000609507	ENST00000395939		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
5CDS-intron	ENST00000609507	ENST00000491469		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50133323	-	DOK5	chr20	53171472	+
In-frame	ENST00000379540	ENST00000380110		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379540	ENST00000223951		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379540	ENST00000544538		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379540	ENST00000397312		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379540	ENST00000380117		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
5CDS-intron	ENST00000379540	ENST00000462649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379521	ENST00000380110		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379521	ENST00000223951		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379521	ENST00000544538		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379521	ENST00000397312		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000379521	ENST00000380117		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
5CDS-intron	ENST00000379521	ENST00000462649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000318524	ENST00000380110		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000318524	ENST00000223951		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000318524	ENST00000544538		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000318524	ENST00000397312		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
In-frame	ENST00000318524	ENST00000380117		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
5CDS-intron	ENST00000318524	ENST00000462649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
intron-3CDS	ENST00000463421	ENST00000380110		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
intron-3CDS	ENST00000463421	ENST00000223951		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
intron-3CDS	ENST00000463421	ENST00000544538		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
intron-3CDS	ENST00000463421	ENST00000397312		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
intron-3CDS	ENST00000463421	ENST00000380117		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
intron-intron	ENST00000463421	ENST00000462649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	NFX1	chr9	33295425	+	ELAVL2	chr9	23731123	-
Frame-shit	ENST00000457714	ENST00000357599		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000457714	ENST00000195173		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000457714	ENST00000451055		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
5CDS-intron	ENST00000457714	ENST00000465147		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000361589	ENST00000357599		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000361589	ENST00000195173		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000361589	ENST00000451055		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
5CDS-intron	ENST00000361589	ENST00000465147		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000401917	ENST00000357599		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000401917	ENST00000195173		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000401917	ENST00000451055		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
5CDS-intron	ENST00000401917	ENST00000465147		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000545397	ENST00000357599		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000545397	ENST00000195173		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
Frame-shit	ENST00000545397	ENST00000451055		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
5CDS-intron	ENST00000545397	ENST00000465147		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
intron-3CDS	ENST00000466350	ENST00000357599		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
intron-3CDS	ENST00000466350	ENST00000195173		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
intron-3CDS	ENST00000466350	ENST00000451055		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
intron-intron	ENST00000466350	ENST00000465147		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NLGN1	chr3	173525622	+	SEMA5B	chr3	122632271	-
5UTR-3CDS	ENST00000406164	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406164	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406164	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406164	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406824	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406824	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406824	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
5UTR-3CDS	ENST00000406824	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000339837	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000339837	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000339837	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000339837	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000413939	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000413939	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000413939	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000413939	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000296202	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000296202	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000296202	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000296202	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000511444	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000511444	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000511444	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000511444	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000512391	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000512391	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000512391	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000512391	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000514703	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000514703	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000514703	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000514703	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000507242	ENST00000273371		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000507242	ENST00000488919		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000507242	ENST00000495992		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
intron-3CDS	ENST00000507242	ENST00000494440		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	NMNAT3	chr3	139346458	-	PLA1A	chr3	119336866	+
Frame-shit	ENST00000370073	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370073	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370073	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370073	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370073	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370073	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370071	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370071	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370071	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370071	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370071	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370071	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370074	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370074	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370074	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370074	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370074	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370074	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370070	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370070	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370070	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370070	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370070	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370070	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370061	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370061	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370061	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370061	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370061	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370061	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370072	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370072	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370072	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370072	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370072	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370072	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000542803	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000542803	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000542803	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000542803	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000542803	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000542803	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370068	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370068	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370068	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370068	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370068	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370068	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370067	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370067	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370067	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370067	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370067	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370067	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370065	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370065	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370065	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370065	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370065	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370065	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370066	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370066	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370066	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370066	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370066	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
Frame-shit	ENST00000370066	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
intron-3CDS	ENST00000477948	ENST00000329008		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
intron-3CDS	ENST00000477948	ENST00000395275		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
intron-3CDS	ENST00000477948	ENST00000395276		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
intron-3CDS	ENST00000477948	ENST00000405452		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
intron-3CDS	ENST00000477948	ENST00000412588		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
intron-3CDS	ENST00000477948	ENST00000431984		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	NTNG1	chr1	107691461	+	CALN1	chr7	71252887	-
5CDS-5UTR	ENST00000196371	ENST00000230882		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000196371	ENST00000357703		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000196371	ENST00000537449		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-intron	ENST00000196371	ENST00000513625		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000509987	ENST00000230882		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000509987	ENST00000357703		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000509987	ENST00000537449		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-intron	ENST00000509987	ENST00000513625		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000512084	ENST00000230882		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000512084	ENST00000357703		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000512084	ENST00000537449		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-intron	ENST00000512084	ENST00000513625		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000510634	ENST00000230882		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000510634	ENST00000357703		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000510634	ENST00000537449		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-intron	ENST00000510634	ENST00000513625		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000513081	ENST00000230882		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000513081	ENST00000357703		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-5UTR	ENST00000513081	ENST00000537449		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
intron-intron	ENST00000513081	ENST00000513625		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	OXCT1	chr5	41840553	-	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000545260	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000545693	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000350537	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000346874	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000374789	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000374790	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000374794	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000374788	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
intron-5UTR	ENST00000466092	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000374776	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000340077	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
intron-5UTR	ENST00000544292	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000374773	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
intron-5UTR	ENST00000374768	ENST00000306858		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PARD3	chr10	35103804	-	FAM83B	chr6	54734985	+
In-frame	ENST00000517434	ENST00000399262		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PCDHGA6	chr5	140756074	+	JMJD1C	chr10	65024524	-
5CDS-intron	ENST00000517434	ENST00000402544		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PCDHGA6	chr5	140756074	+	JMJD1C	chr10	65024524	-
5CDS-5UTR	ENST00000517434	ENST00000399251		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PCDHGA6	chr5	140756074	+	JMJD1C	chr10	65024524	-
5CDS-5UTR	ENST00000517434	ENST00000542921		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PCDHGA6	chr5	140756074	+	JMJD1C	chr10	65024524	-
5CDS-5UTR	ENST00000517434	ENST00000489372		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PCDHGA6	chr5	140756074	+	JMJD1C	chr10	65024524	-
In-frame	ENST00000299468	ENST00000360149		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000299468	ENST00000536311		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000299468	ENST00000328439		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000369758	ENST00000360149		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000369758	ENST00000536311		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000369758	ENST00000328439		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
intron-3CDS	ENST00000609372	ENST00000360149		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
intron-3CDS	ENST00000609372	ENST00000536311		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
intron-3CDS	ENST00000609372	ENST00000328439		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000308824	ENST00000360149		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000308824	ENST00000536311		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
In-frame	ENST00000308824	ENST00000328439		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
intron-3CDS	ENST00000266078	ENST00000360149		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
intron-3CDS	ENST00000266078	ENST00000536311		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
intron-3CDS	ENST00000266078	ENST00000328439		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	PCMTD2	chr20	62891625	+	MYT1	chr20	62850264	+
3UTR-3CDS	ENST00000254658	ENST00000345617		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
3UTR-3CDS	ENST00000254658	ENST00000543185		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
3UTR-3CDS	ENST00000254658	ENST00000541256		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
3UTR-intron	ENST00000254658	ENST00000553145		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
Frame-shit	ENST00000254657	ENST00000345617		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
Frame-shit	ENST00000254657	ENST00000543185		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
Frame-shit	ENST00000254657	ENST00000541256		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
5CDS-intron	ENST00000254657	ENST00000553145		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-3CDS	ENST00000440245	ENST00000345617		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-3CDS	ENST00000440245	ENST00000543185		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-3CDS	ENST00000440245	ENST00000541256		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-intron	ENST00000440245	ENST00000553145		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-3CDS	ENST00000355768	ENST00000345617		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-3CDS	ENST00000355768	ENST00000543185		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-3CDS	ENST00000355768	ENST00000541256		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
intron-intron	ENST00000355768	ENST00000553145		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	PER2	chr2	239157703	-	HDAC4	chr2	240037006	-
Frame-shit	ENST00000255882	ENST00000353891		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
Frame-shit	ENST00000255882	ENST00000263200		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
Frame-shit	ENST00000255882	ENST00000427926		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
5CDS-intron	ENST00000255882	ENST00000442042		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
Frame-shit	ENST00000572273	ENST00000353891		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
Frame-shit	ENST00000572273	ENST00000263200		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
Frame-shit	ENST00000572273	ENST00000427926		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
5CDS-intron	ENST00000572273	ENST00000442042		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000414196	ENST00000353891		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000414196	ENST00000263200		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000414196	ENST00000427926		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-intron	ENST00000414196	ENST00000442042		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000466162	ENST00000353891		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000466162	ENST00000263200		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-3CDS	ENST00000466162	ENST00000427926		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
intron-intron	ENST00000466162	ENST00000442042		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	PI4KA	chr22	21188850	-	CLTCL1	chr22	19230459	-
In-frame	ENST00000545182	ENST00000427718		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
In-frame	ENST00000545182	ENST00000330622		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
5CDS-5UTR	ENST00000545182	ENST00000549689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
In-frame	ENST00000280800	ENST00000427718		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
In-frame	ENST00000280800	ENST00000330622		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
5CDS-5UTR	ENST00000280800	ENST00000549689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
intron-3CDS	ENST00000547163	ENST00000427718		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
intron-3CDS	ENST00000547163	ENST00000330622		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
intron-5UTR	ENST00000547163	ENST00000549689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PLBD2	chr12	113796695	+	FBXO21	chr12	117615446	-
5CDS-5UTR	ENST00000377242	ENST00000376356		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	PLXDC2	chr10	20106120	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000377242	ENST00000524413		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	PLXDC2	chr10	20106120	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000377252	ENST00000376356		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	PLXDC2	chr10	20106120	+	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000377252	ENST00000524413		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	PLXDC2	chr10	20106120	+	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000377238	ENST00000376356		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	PLXDC2	chr10	20106120	+	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000377238	ENST00000524413		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	PLXDC2	chr10	20106120	+	THNSL1	chr10	25310671	+
5CDS-3UTR	ENST00000263433	ENST00000344063		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000431533		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000428193		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000558815		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000560583		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000560055		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000559463		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000558131		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000558752		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000263433	ENST00000458349		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-3UTR	ENST00000376393	ENST00000344063		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000431533		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000428193		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000558815		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000560583		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000560055		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000559463		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000558131		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000558752		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000376393	ENST00000458349		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-3UTR	ENST00000435544	ENST00000344063		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000431533		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000428193		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000558815		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000560583		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000560055		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000559463		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000558131		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000558752		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
5CDS-intron	ENST00000435544	ENST00000458349		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55902922	+
In-frame	ENST00000368226	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368226	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000368226	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368227	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000368227	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000532331	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000532331	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368213	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000368213	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368210	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000368210	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368215	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000368215	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000368207	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5CDS-intron	ENST00000368207	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-3CDS	ENST00000524481	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
5UTR-intron	ENST00000524481	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000452339		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000430974		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000367895		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000355167		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000355286		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000531901		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000525849		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-3CDS	ENST00000525459	ENST00000431403		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
intron-intron	ENST00000525459	ENST00000441015		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PTPRK	chr6	128505577	-	EYA4	chr6	133782252	+
In-frame	ENST00000393386	ENST00000428084		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5CDS-intron	ENST00000393386	ENST00000494651		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5CDS-intron	ENST00000393386	ENST00000437633		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5CDS-5UTR	ENST00000393386	ENST00000476846		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
In-frame	ENST00000449182	ENST00000428084		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5CDS-intron	ENST00000449182	ENST00000494651		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5CDS-intron	ENST00000449182	ENST00000437633		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5CDS-5UTR	ENST00000449182	ENST00000476846		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
intron-3CDS	ENST00000483028	ENST00000428084		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
intron-intron	ENST00000483028	ENST00000494651		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
intron-intron	ENST00000483028	ENST00000437633		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
intron-5UTR	ENST00000483028	ENST00000476846		TCGA	RV	SKCM	TCGA-EE-A20I-06A	PTPRZ1	chr7	121624171	+	DOCK4	chr7	111644186	-
5UTR-3CDS	ENST00000353383	ENST00000313735		TCGA	RV	SKCM	TCGA-EE-A17Y-06A	RAI1	chr17	17627473	+	NOS2	chr17	26094863	-
intron-3CDS	ENST00000489697	ENST00000313735		TCGA	RV	SKCM	TCGA-EE-A17Y-06A	RAI1	chr17	17627473	+	NOS2	chr17	26094863	-
intron-3CDS	ENST00000261641	ENST00000313735		TCGA	RV	SKCM	TCGA-EE-A17Y-06A	RAI1	chr17	17627473	+	NOS2	chr17	26094863	-
5CDS-5UTR	ENST00000368802	ENST00000368682		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000354650		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000229471		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000368667		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000368678		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000229470		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000356013		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000538466		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-intron	ENST00000368802	ENST00000476769		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000368682		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000354650		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000229471		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000368667		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000368678		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000229470		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000356013		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000538466		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-intron	ENST00000368805	ENST00000476769		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000368682		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000354650		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000229471		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000368667		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000368678		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000229470		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000356013		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000538466		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-intron	ENST00000435970	ENST00000476769		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000368682		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000354650		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000229471		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000368667		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000368678		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000229470		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000356013		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000538466		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-intron	ENST00000358835	ENST00000476769		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000368682		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000354650		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000229471		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000368667		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000368678		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000229470		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000356013		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000538466		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-intron	ENST00000462119	ENST00000476769		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-3CDS	ENST00000382004	ENST00000366603		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-3CDS	ENST00000382004	ENST00000264183		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-3CDS	ENST00000382004	ENST00000349213		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-intron	ENST00000382004	ENST00000494543		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000358730	ENST00000366603		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000358730	ENST00000264183		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000358730	ENST00000349213		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-intron	ENST00000358730	ENST00000494543		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-3CDS	ENST00000302303	ENST00000366603		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-3CDS	ENST00000302303	ENST00000264183		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-3CDS	ENST00000302303	ENST00000349213		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
5UTR-intron	ENST00000302303	ENST00000494543		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000381984	ENST00000366603		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000381984	ENST00000264183		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000381984	ENST00000349213		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-intron	ENST00000381984	ENST00000494543		TCGA	RV	SKCM	TCGA-ER-A197-06A	RFX3	chr9	3525747	-	ARID4B	chr1	235359430	-
intron-3CDS	ENST00000367225	ENST00000421865		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	RGS17	chr6	153452259	-	LAMA2	chr6	129371063	+
intron-intron	ENST00000367225	ENST00000498257		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	RGS17	chr6	153452259	-	LAMA2	chr6	129371063	+
5UTR-3CDS	ENST00000206262	ENST00000421865		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	RGS17	chr6	153452259	-	LAMA2	chr6	129371063	+
5UTR-intron	ENST00000206262	ENST00000498257		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	RGS17	chr6	153452259	-	LAMA2	chr6	129371063	+
Frame-shit	ENST00000315212	ENST00000429174		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000409762		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000413539		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000409582		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000258104		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000410020		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000409744		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000409651		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000410041		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000409366		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000315212	ENST00000394120		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
5CDS-3UTR	ENST00000315212	ENST00000479049		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNASEH1	chr2	3599734	-	DYSF	chr2	71871095	+
Frame-shit	ENST00000464233	ENST00000271588		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
Frame-shit	ENST00000464233	ENST00000367492		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
5CDS-intron	ENST00000464233	ENST00000485744		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000436010	ENST00000271588		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000436010	ENST00000367492		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
5CDS-intron	ENST00000436010	ENST00000485744		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000495273	ENST00000271588		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000495273	ENST00000367492		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
5CDS-intron	ENST00000495273	ENST00000485744		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000467549	ENST00000271588		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000467549	ENST00000367492		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
5CDS-intron	ENST00000467549	ENST00000485744		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
intron-3CDS	ENST00000466906	ENST00000271588		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
intron-3CDS	ENST00000466906	ENST00000367492		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
intron-intron	ENST00000466906	ENST00000485744		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ROBO1	chr3	78987751	-	HMCN1	chr1	185966561	+
In-frame	ENST00000371080	ENST00000371000		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371080	ENST00000262345		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371080	ENST00000541374		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371080	ENST00000544434		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
5CDS-intron	ENST00000371080	ENST00000465396		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371079	ENST00000371000		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371079	ENST00000262345		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371079	ENST00000541374		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
In-frame	ENST00000371079	ENST00000544434		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
5CDS-intron	ENST00000371079	ENST00000465396		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
3UTR-3CDS	ENST00000482426	ENST00000371000		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
3UTR-3CDS	ENST00000482426	ENST00000262345		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
3UTR-3CDS	ENST00000482426	ENST00000541374		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
3UTR-3CDS	ENST00000482426	ENST00000544434		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
3UTR-intron	ENST00000482426	ENST00000465396		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
intron-3CDS	ENST00000545203	ENST00000371000		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
intron-3CDS	ENST00000545203	ENST00000262345		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
intron-3CDS	ENST00000545203	ENST00000541374		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
intron-3CDS	ENST00000545203	ENST00000544434		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
intron-intron	ENST00000545203	ENST00000465396		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	ROR1	chr1	64475048	+	IL12RB2	chr1	67787285	+
5CDS-5UTR	ENST00000261991	ENST00000245451		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000261991	ENST00000559087		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000261991	ENST00000417573		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000261991	ENST00000558984		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-intron	ENST00000261991	ENST00000558489		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000536315	ENST00000245451		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000536315	ENST00000559087		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000536315	ENST00000417573		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000536315	ENST00000558984		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-intron	ENST00000536315	ENST00000558489		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000418736	ENST00000245451		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000418736	ENST00000559087		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000418736	ENST00000417573		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-5UTR	ENST00000418736	ENST00000558984		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
5CDS-intron	ENST00000418736	ENST00000558489		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000556304	ENST00000245451		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000556304	ENST00000559087		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000556304	ENST00000417573		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-5UTR	ENST00000556304	ENST00000558984		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
intron-intron	ENST00000556304	ENST00000558489		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	RPS6KA5	chr14	91526676	-	BMP4	chr14	54420118	-
Frame-shit	ENST00000252542	ENST00000354293		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	SAFB2	chr19	5598804	-	AP2A1	chr19	50295192	+
5CDS-3UTR	ENST00000252542	ENST00000600199		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	SAFB2	chr19	5598804	-	AP2A1	chr19	50295192	+
5CDS-3UTR	ENST00000252542	ENST00000359032		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	SAFB2	chr19	5598804	-	AP2A1	chr19	50295192	+
intron-3CDS	ENST00000591310	ENST00000354293		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	SAFB2	chr19	5598804	-	AP2A1	chr19	50295192	+
intron-3UTR	ENST00000591310	ENST00000600199		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	SAFB2	chr19	5598804	-	AP2A1	chr19	50295192	+
intron-3UTR	ENST00000591310	ENST00000359032		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	SAFB2	chr19	5598804	-	AP2A1	chr19	50295192	+
Frame-shit	ENST00000270792	ENST00000313269		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	SH3BGRL3	chr1	26608007	+	GRINA	chr8	145064226	+
5CDS-intron	ENST00000270792	ENST00000395068		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	SH3BGRL3	chr1	26608007	+	GRINA	chr8	145064226	+
intron-3CDS	ENST00000319041	ENST00000313269		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	SH3BGRL3	chr1	26608007	+	GRINA	chr8	145064226	+
intron-intron	ENST00000319041	ENST00000395068		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	SH3BGRL3	chr1	26608007	+	GRINA	chr8	145064226	+
5CDS-3UTR	ENST00000378536	ENST00000476083		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000378536	ENST00000480186		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000378536	ENST00000377443		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000378536	ENST00000377436		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
5CDS-intron	ENST00000378536	ENST00000377442		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
intron-3UTR	ENST00000478223	ENST00000476083		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
intron-intron	ENST00000478223	ENST00000480186		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
intron-intron	ENST00000478223	ENST00000377443		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
intron-intron	ENST00000478223	ENST00000377436		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
intron-intron	ENST00000478223	ENST00000377442		TCGA	RV	SKCM	TCGA-D9-A4Z2-01A	SKI	chr1	2161174	+	CA6	chr1	9027718	+
Frame-shit	ENST00000442725	ENST00000255613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
5CDS-intron	ENST00000442725	ENST00000402499		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
Frame-shit	ENST00000252595	ENST00000255613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
5CDS-intron	ENST00000252595	ENST00000402499		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
5UTR-3CDS	ENST00000598424	ENST00000255613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
5UTR-intron	ENST00000598424	ENST00000402499		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
intron-3CDS	ENST00000598848	ENST00000255613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
intron-intron	ENST00000598848	ENST00000402499		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	SLC27A1	chr19	17581516	+	SUV420H2	chr19	55857581	+
Frame-shit	ENST00000560829	ENST00000413748		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000560829	ENST00000300175		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000560829	ENST00000494364		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000560829	ENST00000497208		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000560829	ENST00000498069		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000353874	ENST00000413748		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000353874	ENST00000300175		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000353874	ENST00000494364		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000353874	ENST00000497208		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000353874	ENST00000498069		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000261889	ENST00000413748		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000261889	ENST00000300175		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000261889	ENST00000494364		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000261889	ENST00000497208		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000261889	ENST00000498069		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000559844	ENST00000413748		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000559844	ENST00000300175		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000559844	ENST00000494364		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000559844	ENST00000497208		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000559844	ENST00000498069		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000561026	ENST00000413748		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000561026	ENST00000300175		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000561026	ENST00000494364		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
Frame-shit	ENST00000561026	ENST00000497208		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000561026	ENST00000498069		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
intron-3CDS	ENST00000559339	ENST00000413748		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
intron-3CDS	ENST00000559339	ENST00000300175		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
intron-3CDS	ENST00000559339	ENST00000494364		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
intron-3CDS	ENST00000559339	ENST00000497208		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
intron-3UTR	ENST00000559339	ENST00000498069		TCGA	RV	SKCM	TCGA-EB-A57M-01A	SNX1	chr15	64429131	+	SCG5	chr15	32971967	+
5UTR-3CDS	ENST00000383202	ENST00000325602		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	STAG1	chr3	136471037	-	P2RY13	chr3	151046795	-
5UTR-3CDS	ENST00000236698	ENST00000325602		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	STAG1	chr3	136471037	-	P2RY13	chr3	151046795	-
5UTR-3CDS	ENST00000434713	ENST00000325602		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	STAG1	chr3	136471037	-	P2RY13	chr3	151046795	-
5UTR-3CDS	ENST00000480733	ENST00000325602		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	STAG1	chr3	136471037	-	P2RY13	chr3	151046795	-
intron-3CDS	ENST00000536929	ENST00000325602		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	STAG1	chr3	136471037	-	P2RY13	chr3	151046795	-
5CDS-3UTR	ENST00000368622	ENST00000305233		TCGA	RV	SKCM	TCGA-EB-A51B-01A	STK32C	chr10	134022538	-	PWWP2B	chr10	134230565	+
5CDS-3UTR	ENST00000368622	ENST00000368609		TCGA	RV	SKCM	TCGA-EB-A51B-01A	STK32C	chr10	134022538	-	PWWP2B	chr10	134230565	+
5CDS-3UTR	ENST00000368625	ENST00000305233		TCGA	RV	SKCM	TCGA-EB-A51B-01A	STK32C	chr10	134022538	-	PWWP2B	chr10	134230565	+
5CDS-3UTR	ENST00000368625	ENST00000368609		TCGA	RV	SKCM	TCGA-EB-A51B-01A	STK32C	chr10	134022538	-	PWWP2B	chr10	134230565	+
5UTR-3UTR	ENST00000368622	ENST00000305233		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	STK32C	chr10	134059404	-	PWWP2B	chr10	134230565	+
5UTR-3UTR	ENST00000368622	ENST00000368609		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	STK32C	chr10	134059404	-	PWWP2B	chr10	134230565	+
5CDS-3UTR	ENST00000368625	ENST00000305233		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	STK32C	chr10	134059404	-	PWWP2B	chr10	134230565	+
5CDS-3UTR	ENST00000368625	ENST00000368609		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	STK32C	chr10	134059404	-	PWWP2B	chr10	134230565	+
In-frame	ENST00000534859	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000534859	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000534859	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000399639	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000399639	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000399639	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
Frame-shit	ENST00000422431	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
Frame-shit	ENST00000422431	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
Frame-shit	ENST00000422431	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
5UTR-3CDS	ENST00000537238	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
5UTR-3CDS	ENST00000537238	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
5UTR-3CDS	ENST00000537238	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000367019	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000367019	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000367019	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000472886	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000472886	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
In-frame	ENST00000472886	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
3UTR-3CDS	ENST00000271745	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
3UTR-3CDS	ENST00000271745	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
3UTR-3CDS	ENST00000271745	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
5UTR-3CDS	ENST00000367015	ENST00000367028		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
5UTR-3CDS	ENST00000367015	ENST00000261465		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
5UTR-3CDS	ENST00000367015	ENST00000367027		TCGA	RV	SKCM	TCGA-BF-AAP1-01A	SYT14	chr1	210126101	+	HSD11B1	chr1	209905781	+
intron-intron	ENST00000310924	ENST00000378746		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000310924	ENST00000378735		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000310924	ENST00000403231		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000310924	ENST00000487055		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000576768	ENST00000378746		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000576768	ENST00000378735		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000576768	ENST00000403231		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000576768	ENST00000487055		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000340848	ENST00000378746		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000340848	ENST00000378735		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000340848	ENST00000403231		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000340848	ENST00000487055		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000572862	ENST00000378746		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000572862	ENST00000378735		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000572862	ENST00000403231		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000572862	ENST00000487055		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000570373	ENST00000378746		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000570373	ENST00000378735		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000570373	ENST00000403231		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
intron-intron	ENST00000570373	ENST00000487055		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TBC1D16	chr17	77913821	-	KIF3A	chr5	132035266	-
In-frame	ENST00000337137	ENST00000382902		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000337137	ENST00000307050		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000380995	ENST00000382902		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000380995	ENST00000307050		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000407381	ENST00000382902		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000407381	ENST00000307050		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000355704	ENST00000382902		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000355704	ENST00000307050		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
intron-3CDS	ENST00000472791	ENST00000382902		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
intron-3CDS	ENST00000472791	ENST00000307050		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000406733	ENST00000382902		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
In-frame	ENST00000406733	ENST00000307050		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47308084	+	OTUD7A	chr15	31862400	-
5CDS-intron	ENST00000372084	ENST00000524908		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000372084	ENST00000481882		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000372084	ENST00000396314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000372086	ENST00000524908		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000372086	ENST00000481882		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000372086	ENST00000396314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000341771	ENST00000524908		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000341771	ENST00000481882		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000341771	ENST00000396314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5UTR-intron	ENST00000486676	ENST00000524908		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5UTR-intron	ENST00000486676	ENST00000481882		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5UTR-intron	ENST00000486676	ENST00000396314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
intron-intron	ENST00000538496	ENST00000524908		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
intron-intron	ENST00000538496	ENST00000481882		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
intron-intron	ENST00000538496	ENST00000396314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000451835	ENST00000524908		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000451835	ENST00000481882		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000451835	ENST00000396314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TESK2	chr1	45923236	-	KNCN	chr1	47015674	-
5CDS-intron	ENST00000361475	ENST00000388922		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000361475	ENST00000550683		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
5CDS-5UTR	ENST00000361475	ENST00000419526		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000361475	ENST00000550084		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000536701	ENST00000388922		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000536701	ENST00000550683		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000536701	ENST00000419526		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000536701	ENST00000550084		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000536724	ENST00000388922		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000536724	ENST00000550683		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-5UTR	ENST00000536724	ENST00000419526		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
intron-intron	ENST00000536724	ENST00000550084		TCGA	RV	SKCM	TCGA-EE-A2GE-06A	TGM2	chr20	36756863	-	ACVRL1	chr12	52306155	+
5CDS-intron	ENST00000266085	ENST00000371754		TCGA	RV	SKCM	TCGA-GN-A26C-01A	TIMP3	chr22	33259030	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000266085	ENST00000469991		TCGA	RV	SKCM	TCGA-GN-A26C-01A	TIMP3	chr22	33259030	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000266085	ENST00000371752		TCGA	RV	SKCM	TCGA-GN-A26C-01A	TIMP3	chr22	33259030	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000266085	ENST00000396105		TCGA	RV	SKCM	TCGA-GN-A26C-01A	TIMP3	chr22	33259030	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000453658	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000453658	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000453658	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000453658	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000453658	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000377259	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000377259	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000377259	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000377259	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000377259	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000377245	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000377245	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000377245	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000377245	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000377245	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000348208	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000348208	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000348208	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000348208	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000348208	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000265384	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000265384	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-3UTR	ENST00000265384	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000265384	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
5CDS-intron	ENST00000265384	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000535702	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000535702	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000535702	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000535702	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000535702	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000539225	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000539225	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000539225	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000539225	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000539225	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000498204	ENST00000492220		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000498204	ENST00000401000		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-3UTR	ENST00000498204	ENST00000539519		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000498204	ENST00000369067		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
intron-intron	ENST00000498204	ENST00000369068		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	TJP2	chr9	71789348	+	RPRD2	chr1	150429764	+
In-frame	ENST00000457354	ENST00000298355		TCGA	RV	SKCM	TCGA-GN-A265-06A	TMX1	chr14	51710689	+	TRIM9	chr14	51467558	-
5CDS-intron	ENST00000457354	ENST00000338969		TCGA	RV	SKCM	TCGA-GN-A265-06A	TMX1	chr14	51710689	+	TRIM9	chr14	51467558	-
5CDS-intron	ENST00000457354	ENST00000360392		TCGA	RV	SKCM	TCGA-GN-A265-06A	TMX1	chr14	51710689	+	TRIM9	chr14	51467558	-
5CDS-intron	ENST00000457354	ENST00000557456		TCGA	RV	SKCM	TCGA-GN-A265-06A	TMX1	chr14	51710689	+	TRIM9	chr14	51467558	-
5CDS-5UTR	ENST00000399537	ENST00000406451		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000399537	ENST00000401921		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000399537	ENST00000432645		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000399537	ENST00000441542		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000399537	ENST00000417496		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-3UTR	ENST00000399537	ENST00000476135		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000399537	ENST00000405010		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000399537	ENST00000428307		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000399537	ENST00000406072		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000399537	ENST00000456174		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000399537	ENST00000524023		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000430969	ENST00000406451		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000430969	ENST00000401921		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000430969	ENST00000432645		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000430969	ENST00000441542		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000430969	ENST00000417496		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-3UTR	ENST00000430969	ENST00000476135		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000430969	ENST00000405010		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000430969	ENST00000428307		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000430969	ENST00000406072		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000430969	ENST00000456174		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000430969	ENST00000524023		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000399434	ENST00000406451		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000399434	ENST00000401921		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000399434	ENST00000432645		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000399434	ENST00000441542		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000399434	ENST00000417496		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000399434	ENST00000476135		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000399434	ENST00000405010		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000399434	ENST00000428307		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000399434	ENST00000406072		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000399434	ENST00000456174		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000399434	ENST00000524023		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18535885	+
In-frame	ENST00000344204	ENST00000263409		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
In-frame	ENST00000344204	ENST00000453190		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
5CDS-intron	ENST00000344204	ENST00000503088		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
In-frame	ENST00000537187	ENST00000263409		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
In-frame	ENST00000537187	ENST00000453190		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
5CDS-intron	ENST00000537187	ENST00000503088		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000509967	ENST00000263409		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000509967	ENST00000453190		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-intron	ENST00000509967	ENST00000503088		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000515710	ENST00000263409		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000515710	ENST00000453190		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-intron	ENST00000515710	ENST00000503088		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000344135	ENST00000263409		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000344135	ENST00000453190		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-intron	ENST00000344135	ENST00000503088		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14143991	+	LIFR	chr5	38489347	-
intron-3CDS	ENST00000537971	ENST00000280871		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000537971	ENST00000380858		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
5UTR-3CDS	ENST00000011898	ENST00000280871		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
5UTR-3CDS	ENST00000011898	ENST00000380858		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000407263	ENST00000280871		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000407263	ENST00000380858		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000492305	ENST00000280871		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000492305	ENST00000380858		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TSPAN9	chr12	3192885	+	SLC2A13	chr12	40345167	-
5CDS-5UTR	ENST00000306627	ENST00000373840		TCGA	RV	SKCM	TCGA-WE-AA9Y-06A	UBE2E1	chr3	23853001	+	RAB14	chr9	123955697	-
intron-5UTR	ENST00000346855	ENST00000373840		TCGA	RV	SKCM	TCGA-WE-AA9Y-06A	UBE2E1	chr3	23853001	+	RAB14	chr9	123955697	-
5CDS-5UTR	ENST00000467766	ENST00000373840		TCGA	RV	SKCM	TCGA-WE-AA9Y-06A	UBE2E1	chr3	23853001	+	RAB14	chr9	123955697	-
5CDS-5UTR	ENST00000424381	ENST00000373840		TCGA	RV	SKCM	TCGA-WE-AA9Y-06A	UBE2E1	chr3	23853001	+	RAB14	chr9	123955697	-
3UTR-5UTR	ENST00000475680	ENST00000373840		TCGA	RV	SKCM	TCGA-WE-AA9Y-06A	UBE2E1	chr3	23853001	+	RAB14	chr9	123955697	-
In-frame	ENST00000345496	ENST00000356577		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
In-frame	ENST00000345496	ENST00000290239		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
In-frame	ENST00000345496	ENST00000381692		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
In-frame	ENST00000345496	ENST00000300278		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
In-frame	ENST00000345496	ENST00000381679		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5CDS-intron	ENST00000345496	ENST00000470533		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000477954	ENST00000356577		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000477954	ENST00000290239		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000477954	ENST00000381692		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000477954	ENST00000300278		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5UTR-3CDS	ENST00000477954	ENST00000381679		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5UTR-intron	ENST00000477954	ENST00000470533		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
Frame-shit	ENST00000330942	ENST00000356577		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
Frame-shit	ENST00000330942	ENST00000290239		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
Frame-shit	ENST00000330942	ENST00000381692		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
Frame-shit	ENST00000330942	ENST00000300278		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
Frame-shit	ENST00000330942	ENST00000381679		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
5CDS-intron	ENST00000330942	ENST00000470533		TCGA	RV	SKCM	TCGA-RP-A693-06A	UBE2G2	chr21	46207835	-	SON	chr21	34918519	+
Frame-shit	ENST00000393792	ENST00000521850		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	UBTD2	chr5	171710600	-	C5orf58	chr5	169672966	+
5CDS-intron	ENST00000393792	ENST00000517575		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	UBTD2	chr5	171710600	-	C5orf58	chr5	169672966	+
5CDS-intron	ENST00000393792	ENST00000593851		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	UBTD2	chr5	171710600	-	C5orf58	chr5	169672966	+
Frame-shit	ENST00000406606	ENST00000481739		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000406606	ENST00000356384		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000406606	ENST00000540193		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
Frame-shit	ENST00000371850	ENST00000481739		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000371850	ENST00000356384		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000371850	ENST00000540193		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
Frame-shit	ENST00000371851	ENST00000481739		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5CDS-3UTR	ENST00000371851	ENST00000356384		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5CDS-intron	ENST00000371851	ENST00000540193		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5UTR-3CDS	ENST00000486113	ENST00000481739		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5UTR-3UTR	ENST00000486113	ENST00000356384		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
5UTR-intron	ENST00000486113	ENST00000540193		TCGA	RV	SKCM	TCGA-EE-A2A1-06A	VAV2	chr9	136857197	-	RXRA	chr9	137293478	+
intron-intron	ENST00000544301	ENST00000309364		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000359180		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000317589		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000355397		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000429027		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000539256		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000299275		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000538714		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000543806		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000424268		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000540972		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000544301	ENST00000510738		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000309364		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000359180		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000317589		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000355397		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000429027		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000539256		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000299275		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000538714		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000543806		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000424268		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000540972		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5CDS-intron	ENST00000224237	ENST00000510738		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000309364		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000359180		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000317589		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000355397		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000429027		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000539256		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000299275		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000538714		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000543806		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000424268		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000540972		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
intron-intron	ENST00000485947	ENST00000510738		TCGA	RV	SKCM	TCGA-BF-A1PV-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19514516	+
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
5UTR-5UTR	ENST00000462705	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000393785	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000481632	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000471418	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000357258	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000464560	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000488663	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
intron-5UTR	ENST00000474710	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ZBTB20	chr3	114790066	-	LSAMP	chr3	115571464	-
5CDS-5UTR	ENST00000337859	ENST00000409843		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000409830		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000410051		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-3UTR	ENST00000337859	ENST00000479019		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000409805		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000359135		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000409580		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000409637		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5CDS-5UTR	ENST00000337859	ENST00000409609		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000409843		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000409830		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000410051		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-3UTR	ENST00000544130	ENST00000479019		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000409805		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000359135		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000409580		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000409637		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
5UTR-5UTR	ENST00000544130	ENST00000409609		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000409843		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000409830		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000410051		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-3UTR	ENST00000468120	ENST00000479019		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000409805		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000359135		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000409580		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000409637		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
intron-5UTR	ENST00000468120	ENST00000409609		TCGA	RV	SKCM	TCGA-EB-A57M-01A	ZC3H15	chr2	187351184	+	GULP1	chr2	189342386	+
Frame-shit	ENST00000424784	ENST00000338754		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
Frame-shit	ENST00000424784	ENST00000398110		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
Frame-shit	ENST00000424784	ENST00000403880		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
5UTR-3CDS	ENST00000503758	ENST00000338754		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
5UTR-3CDS	ENST00000503758	ENST00000398110		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
5UTR-3CDS	ENST00000503758	ENST00000403880		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
Frame-shit	ENST00000283441	ENST00000338754		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
Frame-shit	ENST00000283441	ENST00000398110		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
Frame-shit	ENST00000283441	ENST00000403880		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
intron-3CDS	ENST00000511539	ENST00000338754		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
intron-3CDS	ENST00000511539	ENST00000398110		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
intron-3CDS	ENST00000511539	ENST00000403880		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	ZDHHC11	chr5	840610	-	TPST2	chr22	26924228	-
5UTR-3CDS	ENST00000304239	ENST00000301244		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000304239	ENST00000587090		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000304239	ENST00000454580		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
5UTR-3CDS	ENST00000337995	ENST00000301244		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
5UTR-5UTR	ENST00000337995	ENST00000587090		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
5UTR-intron	ENST00000337995	ENST00000454580		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000586540	ENST00000301244		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000586540	ENST00000587090		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000586540	ENST00000454580		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	ZNF420	chr19	37569472	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000366603	ENST00000366510		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID4B	chr1	235357328	-	SCCPDH	chr1	246927548	+
Frame-shit	ENST00000264183	ENST00000366510		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID4B	chr1	235357328	-	SCCPDH	chr1	246927548	+
Frame-shit	ENST00000349213	ENST00000366510		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID4B	chr1	235357328	-	SCCPDH	chr1	246927548	+
intron-3CDS	ENST00000494543	ENST00000366510		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID4B	chr1	235357328	-	SCCPDH	chr1	246927548	+
Frame-shit	ENST00000357668	ENST00000276925		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
5CDS-3UTR	ENST00000357668	ENST00000380142		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
5CDS-intron	ENST00000357668	ENST00000539462		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
In-frame	ENST00000518721	ENST00000276925		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
5CDS-3UTR	ENST00000518721	ENST00000380142		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
5CDS-intron	ENST00000518721	ENST00000539462		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
intron-3CDS	ENST00000520625	ENST00000276925		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
intron-3UTR	ENST00000520625	ENST00000380142		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
intron-intron	ENST00000520625	ENST00000539462		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	ASAP1	chr8	131370263	-	CDKN2B	chr9	22006246	-
Frame-shit	ENST00000367064	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367064	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367064	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367064	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367063	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367063	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367063	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367063	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000391921	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000391921	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000391921	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000391921	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-3CDS	ENST00000367067	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-3CDS	ENST00000367067	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-intron	ENST00000367067	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-intron	ENST00000367067	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000314754	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000314754	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000314754	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000314754	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000391920	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000391920	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000391920	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000391920	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367062	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367062	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367062	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367062	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367065	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
Frame-shit	ENST00000367065	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367065	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000367065	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-3CDS	ENST00000465534	ENST00000366999		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-3CDS	ENST00000465534	ENST00000540251		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-intron	ENST00000465534	ENST00000462283		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
3UTR-intron	ENST00000465534	ENST00000366998		TCGA	RV	SKCM	TCGA-D9-A1JW-06A	CD55	chr1	207512762	+	NEK2	chr1	211836994	-
5CDS-intron	ENST00000380050	ENST00000457268		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000380050	ENST00000265440		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000380050	ENST00000320239		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000380050	ENST00000393485		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000380050	ENST00000484212		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000380050	ENST00000474337		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000265741	ENST00000457268		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000265741	ENST00000265440		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000265741	ENST00000320239		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000265741	ENST00000393485		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000265741	ENST00000484212		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000265741	ENST00000474337		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000406263	ENST00000457268		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000406263	ENST00000265440		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000406263	ENST00000320239		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000406263	ENST00000393485		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000406263	ENST00000484212		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000406263	ENST00000474337		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000436577	ENST00000457268		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000436577	ENST00000265440		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000436577	ENST00000320239		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000436577	ENST00000393485		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-5UTR	ENST00000436577	ENST00000484212		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
5CDS-intron	ENST00000436577	ENST00000474337		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
intron-intron	ENST00000496279	ENST00000457268		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
intron-5UTR	ENST00000496279	ENST00000265440		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
intron-5UTR	ENST00000496279	ENST00000320239		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
intron-5UTR	ENST00000496279	ENST00000393485		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
intron-5UTR	ENST00000496279	ENST00000484212		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
intron-intron	ENST00000496279	ENST00000474337		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CDK14	chr7	90528668	+	TFEC	chr7	115624567	-
In-frame	ENST00000290913	ENST00000300119		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
In-frame	ENST00000290913	ENST00000442789		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
In-frame	ENST00000290913	ENST00000544473		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
5CDS-intron	ENST00000290913	ENST00000476795		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
In-frame	ENST00000508789	ENST00000300119		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
In-frame	ENST00000508789	ENST00000442789		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
In-frame	ENST00000508789	ENST00000544473		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
5CDS-intron	ENST00000508789	ENST00000476795		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000515867	ENST00000300119		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000515867	ENST00000442789		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000515867	ENST00000544473		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
intron-intron	ENST00000515867	ENST00000476795		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126452065	+	MYO1A	chr12	57424958	-
In-frame	ENST00000529230	ENST00000360909		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000529230	ENST00000351081		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000529230	ENST00000395125		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000529230	ENST00000556135		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000529230	ENST00000553966		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000415402	ENST00000360909		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000415402	ENST00000351081		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000415402	ENST00000395125		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000415402	ENST00000556135		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000415402	ENST00000553966		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000312055	ENST00000360909		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000312055	ENST00000351081		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000312055	ENST00000395125		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000312055	ENST00000556135		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000312055	ENST00000553966		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000354558	ENST00000360909		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000354558	ENST00000351081		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
In-frame	ENST00000354558	ENST00000395125		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000354558	ENST00000556135		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000354558	ENST00000553966		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
intron-3CDS	ENST00000532321	ENST00000360909		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
intron-3CDS	ENST00000532321	ENST00000351081		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
intron-3CDS	ENST00000532321	ENST00000395125		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
intron-intron	ENST00000532321	ENST00000556135		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
intron-intron	ENST00000532321	ENST00000553966		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CKAP5	chr11	46842726	-	DAAM1	chr14	59797927	+
5CDS-intron	ENST00000448525	ENST00000361339		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-intron	ENST00000448525	ENST00000426508		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-5UTR	ENST00000448525	ENST00000439987		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-intron	ENST00000382745	ENST00000361339		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-intron	ENST00000382745	ENST00000426508		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-5UTR	ENST00000382745	ENST00000439987		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-intron	ENST00000262318	ENST00000361339		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-intron	ENST00000262318	ENST00000426508		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
5CDS-5UTR	ENST00000262318	ENST00000439987		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
intron-intron	ENST00000566812	ENST00000361339		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
intron-intron	ENST00000566812	ENST00000426508		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
intron-5UTR	ENST00000566812	ENST00000439987		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	CLCN7	chr16	1500498	-	IFT140	chr16	1614163	-
intron-3CDS	ENST00000448525	ENST00000369002		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
intron-intron	ENST00000448525	ENST00000460009		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000382745	ENST00000369002		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
intron-intron	ENST00000382745	ENST00000460009		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000262318	ENST00000369002		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000262318	ENST00000460009		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000566812	ENST00000369002		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
intron-intron	ENST00000566812	ENST00000460009		TCGA	RV	SKCM	TCGA-GN-A26D-06A	CLCN7	chr16	1495345	-	SEC63	chr6	108214782	-
In-frame	ENST00000445145	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000445145	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000445145	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
5CDS-intron	ENST00000445145	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000388767	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000388767	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000388767	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
5CDS-intron	ENST00000388767	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
Frame-shit	ENST00000345068	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
Frame-shit	ENST00000345068	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
Frame-shit	ENST00000345068	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
5CDS-intron	ENST00000345068	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000580212	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000580212	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000580212	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
5CDS-intron	ENST00000580212	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-3CDS	ENST00000456796	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-3CDS	ENST00000456796	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-3CDS	ENST00000456796	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-intron	ENST00000456796	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000584969	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000584969	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
In-frame	ENST00000584969	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
5CDS-intron	ENST00000584969	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-3CDS	ENST00000577909	ENST00000342228		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-3CDS	ENST00000577909	ENST00000520262		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-3CDS	ENST00000577909	ENST00000520179		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
intron-intron	ENST00000577909	ENST00000523340		TCGA	RV	SKCM	TCGA-EB-A3HV-01A	CORO6	chr17	27945808	-	SLC20A2	chr8	42275485	-
3UTR-intron	ENST00000247655	ENST00000309364		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000359180		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000317589		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000355397		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000429027		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000539256		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000299275		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000538714		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000543806		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000424268		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000540972		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
3UTR-intron	ENST00000247655	ENST00000510738		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000309364		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000359180		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000317589		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000355397		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000429027		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000539256		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000299275		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000538714		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000543806		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000424268		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000540972		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000509578	ENST00000510738		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000309364		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000359180		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000317589		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000355397		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000429027		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000539256		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000299275		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000538714		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000543806		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000424268		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000540972		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000515763	ENST00000510738		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000309364		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000359180		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000317589		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000355397		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000429027		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000539256		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000299275		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000538714		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000543806		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000424268		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000540972		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000513124	ENST00000510738		TCGA	RV	SKCM	TCGA-RP-A695-06A	COX7C	chr5	85916583	+	PLEKHA5	chr12	19441012	+
Frame-shit	ENST00000396299	ENST00000283928		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000396299	ENST00000466516		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
Frame-shit	ENST00000357727	ENST00000283928		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000357727	ENST00000466516		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
Frame-shit	ENST00000396300	ENST00000283928		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000396300	ENST00000466516		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
Frame-shit	ENST00000409603	ENST00000283928		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
5CDS-intron	ENST00000409603	ENST00000466516		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
intron-3CDS	ENST00000396298	ENST00000283928		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
intron-intron	ENST00000396298	ENST00000466516		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
intron-3CDS	ENST00000482692	ENST00000283928		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
intron-intron	ENST00000482692	ENST00000466516		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	CREB5	chr7	28547355	+	JAZF1	chr7	28031600	-
Frame-shit	ENST00000262367	ENST00000361837		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
In-frame	ENST00000262367	ENST00000569496		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
Frame-shit	ENST00000262367	ENST00000563531		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
Frame-shit	ENST00000262367	ENST00000483320		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
Frame-shit	ENST00000382070	ENST00000361837		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
In-frame	ENST00000382070	ENST00000569496		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
Frame-shit	ENST00000382070	ENST00000563531		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
Frame-shit	ENST00000382070	ENST00000483320		TCGA	RV	SKCM	TCGA-ER-A42K-06A	CREBBP	chr16	3788560	-	C16orf59	chr16	2514040	+
In-frame	ENST00000354336	ENST00000406902		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	CRKL	chr22	21288532	+	GRAMD4	chr22	47063993	+
In-frame	ENST00000354336	ENST00000361034		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	CRKL	chr22	21288532	+	GRAMD4	chr22	47063993	+
5CDS-intron	ENST00000354336	ENST00000490378		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	CRKL	chr22	21288532	+	GRAMD4	chr22	47063993	+
5CDS-intron	ENST00000354336	ENST00000408031		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	CRKL	chr22	21288532	+	GRAMD4	chr22	47063993	+
5CDS-5UTR	ENST00000280886	ENST00000606784		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
5CDS-5UTR	ENST00000280886	ENST00000369663		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
5CDS-5UTR	ENST00000280886	ENST00000606521		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
5CDS-5UTR	ENST00000381496	ENST00000606784		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
5CDS-5UTR	ENST00000381496	ENST00000369663		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
5CDS-5UTR	ENST00000381496	ENST00000606521		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
intron-5UTR	ENST00000540204	ENST00000606784		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
intron-5UTR	ENST00000540204	ENST00000369663		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
intron-5UTR	ENST00000540204	ENST00000606521		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85472466	-
5CDS-intron	ENST00000526148	ENST00000371917		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000526148	ENST00000493140		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000525681	ENST00000371917		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000525681	ENST00000493140		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000339995	ENST00000371917		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000339995	ENST00000493140		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000396525	ENST00000371917		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000396525	ENST00000493140		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000525995	ENST00000371917		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000525995	ENST00000493140		TCGA	RV	SKCM	TCGA-GN-A26D-06A	EIF4G2	chr11	10818601	-	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000295569	ENST00000415609		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM19A4	chr3	68929881	-	UBA3	chr3	69105434	-
Frame-shit	ENST00000295569	ENST00000349511		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM19A4	chr3	68929881	-	UBA3	chr3	69105434	-
Frame-shit	ENST00000295569	ENST00000361055		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM19A4	chr3	68929881	-	UBA3	chr3	69105434	-
Frame-shit	ENST00000295569	ENST00000540295		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM19A4	chr3	68929881	-	UBA3	chr3	69105434	-
intron-3CDS	ENST00000311172	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000311172	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000311172	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000311172	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000311172	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409314	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409314	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409314	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409314	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409314	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409418	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409418	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
In-frame	ENST00000409418	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409418	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5CDS-intron	ENST00000409418	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000458644	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000458644	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000458644	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000458644	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000458644	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000409853	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000409853	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-3CDS	ENST00000409853	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000409853	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
5UTR-intron	ENST00000409853	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000409263	ENST00000355221		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000409263	ENST00000520188		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000409263	ENST00000359530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000409263	ENST00000523899		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-intron	ENST00000409263	ENST00000396774		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FCHSD2	chr11	72851076	-	ATP6V1H	chr8	54682303	-
intron-3CDS	ENST00000536402	ENST00000359660		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
intron-3CDS	ENST00000536402	ENST00000542267		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
intron-intron	ENST00000536402	ENST00000496714		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
Frame-shit	ENST00000281092	ENST00000359660		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
Frame-shit	ENST00000281092	ENST00000542267		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
5CDS-intron	ENST00000281092	ENST00000496714		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
intron-3CDS	ENST00000502752	ENST00000359660		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
intron-3CDS	ENST00000502752	ENST00000542267		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
intron-intron	ENST00000502752	ENST00000496714		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
Frame-shit	ENST00000438717	ENST00000359660		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
Frame-shit	ENST00000438717	ENST00000542267		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
5CDS-intron	ENST00000438717	ENST00000496714		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FER	chr5	108233549	+	FBXL17	chr5	107197561	-
5CDS-5UTR	ENST00000415807	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000336824	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000416957	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000392699	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000421757	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
5CDS-5UTR	ENST00000423424	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
intron-5UTR	ENST00000476794	ENST00000362032		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	FNDC3B	chr3	171851336	+	SUCNR1	chr3	151597640	+
Frame-shit	ENST00000340149	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000340149	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000340149	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
5CDS-3UTR	ENST00000340149	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
5CDS-intron	ENST00000340149	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000361507	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000361507	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000361507	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
5CDS-3UTR	ENST00000361507	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
5CDS-intron	ENST00000361507	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000526030	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000526030	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000526030	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000526030	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000526030	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77926343	-	TRIP12	chr2	230662547	-
3UTR-3CDS	ENST00000482812	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
3UTR-intron	ENST00000482812	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
3UTR-intron	ENST00000482812	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
3UTR-intron	ENST00000482812	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
3UTR-intron	ENST00000482812	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5UTR-3CDS	ENST00000430044	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5UTR-intron	ENST00000430044	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5UTR-intron	ENST00000430044	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5UTR-intron	ENST00000430044	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5UTR-intron	ENST00000430044	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
Frame-shit	ENST00000452146	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5CDS-intron	ENST00000452146	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5CDS-intron	ENST00000452146	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5CDS-intron	ENST00000452146	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
5CDS-intron	ENST00000452146	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000434507	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000434507	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000434507	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000434507	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000434507	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000415421	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000415421	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000415421	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000415421	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000415421	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000320311	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000320311	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000320311	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000320311	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000320311	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-3CDS	ENST00000422997	ENST00000353442		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000422997	ENST00000359422		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000422997	ENST00000354505		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000422997	ENST00000540390		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
intron-intron	ENST00000422997	ENST00000430825		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	GALNT11	chr7	151722969	+	LMBR1	chr7	156629579	-
Frame-shit	ENST00000223145	ENST00000399322		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
Frame-shit	ENST00000223145	ENST00000258767		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000223145	ENST00000403951		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000223145	ENST00000402815		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000223145	ENST00000407950		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000223145	ENST00000444700		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
5CDS-intron	ENST00000223145	ENST00000406247		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
5CDS-5UTR	ENST00000223145	ENST00000403963		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-3CDS	ENST00000474269	ENST00000399322		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-3CDS	ENST00000474269	ENST00000258767		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000474269	ENST00000403951		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000474269	ENST00000402815		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000474269	ENST00000407950		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000474269	ENST00000444700		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-intron	ENST00000474269	ENST00000406247		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
intron-5UTR	ENST00000474269	ENST00000403963		TCGA	RV	SKCM	TCGA-EB-A44R-06A	GLCCI1	chr7	8009438	+	DGKB	chr7	14881075	-
Frame-shit	ENST00000372097	ENST00000359246		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
5CDS-intron	ENST00000372097	ENST00000375376		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
Frame-shit	ENST00000372095	ENST00000359246		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
5CDS-intron	ENST00000372095	ENST00000375376		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
Frame-shit	ENST00000372099	ENST00000359246		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
5CDS-intron	ENST00000372099	ENST00000375376		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
Frame-shit	ENST00000372108	ENST00000359246		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
5CDS-intron	ENST00000372108	ENST00000375376		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
Frame-shit	ENST00000342018	ENST00000359246		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
5CDS-intron	ENST00000342018	ENST00000375376		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
intron-3CDS	ENST00000485692	ENST00000359246		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
intron-intron	ENST00000485692	ENST00000375376		TCGA	RV	SKCM	TCGA-GN-A265-06A	GTF3C5	chr9	135930196	+	PHF2	chr9	96435867	+
intron-intron	ENST00000391976	ENST00000322349		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000391976	ENST00000547833		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000310931	ENST00000322349		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000310931	ENST00000547833		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000391975	ENST00000322349		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000391975	ENST00000547833		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000427183	ENST00000322349		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
5CDS-intron	ENST00000427183	ENST00000547833		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000476807	ENST00000322349		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
intron-intron	ENST00000476807	ENST00000547833		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	HDLBP	chr2	242168639	-	EEA1	chr12	93229203	-
5UTR-3CDS	ENST00000372583	ENST00000398665		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-intron	ENST00000372583	ENST00000608122		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-3CDS	ENST00000372584	ENST00000398665		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-intron	ENST00000372584	ENST00000608122		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-3CDS	ENST00000247584	ENST00000398665		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-intron	ENST00000247584	ENST00000608122		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-3CDS	ENST00000429157	ENST00000398665		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-intron	ENST00000429157	ENST00000608122		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
intron-3CDS	ENST00000460604	ENST00000398665		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
intron-intron	ENST00000460604	ENST00000608122		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	HIVEP3	chr1	42094420	-	DOT1L	chr19	2180712	+
5UTR-3CDS	ENST00000484302	ENST00000273854		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000484302	ENST00000432638		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000484302	ENST00000354839		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000484302	ENST00000511294		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000225648	ENST00000273854		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000225648	ENST00000432638		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000225648	ENST00000354839		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000225648	ENST00000511294		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490419	ENST00000273854		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490419	ENST00000432638		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490419	ENST00000354839		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490419	ENST00000511294		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	HOXB6	chr17	46681842	-	EPHA5	chr4	66509145	-
5CDS-intron	ENST00000361565	ENST00000339556		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
5CDS-intron	ENST00000361565	ENST00000392622		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
5CDS-intron	ENST00000361565	ENST00000392623		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
5CDS-5UTR	ENST00000361565	ENST00000440685		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
5CDS-intron	ENST00000361565	ENST00000368699		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
5CDS-5UTR	ENST00000361565	ENST00000491177		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
3UTR-intron	ENST00000464348	ENST00000339556		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
3UTR-intron	ENST00000464348	ENST00000392622		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
3UTR-intron	ENST00000464348	ENST00000392623		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
3UTR-5UTR	ENST00000464348	ENST00000440685		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
3UTR-intron	ENST00000464348	ENST00000368699		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
3UTR-5UTR	ENST00000464348	ENST00000491177		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	IPO9	chr1	201798500	+	S100A13	chr1	153600074	-
In-frame	ENST00000589786	ENST00000416426		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000589786	ENST00000284073		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000589786	ENST00000322684		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000589786	ENST00000442934		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000589786	ENST00000579180		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
5CDS-3UTR	ENST00000589786	ENST00000579505		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000284006	ENST00000416426		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000284006	ENST00000284073		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000284006	ENST00000322684		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000284006	ENST00000442934		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000284006	ENST00000579180		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
5CDS-3UTR	ENST00000284006	ENST00000579505		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000588881	ENST00000416426		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000588881	ENST00000284073		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000588881	ENST00000322684		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000588881	ENST00000442934		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000588881	ENST00000579180		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
5CDS-3UTR	ENST00000588881	ENST00000579505		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000430256	ENST00000416426		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000430256	ENST00000284073		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000430256	ENST00000322684		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000430256	ENST00000442934		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
In-frame	ENST00000430256	ENST00000579180		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
5CDS-3UTR	ENST00000430256	ENST00000579505		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000592363	ENST00000416426		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000592363	ENST00000284073		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000592363	ENST00000322684		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000592363	ENST00000442934		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
intron-3CDS	ENST00000592363	ENST00000579180		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
intron-3UTR	ENST00000592363	ENST00000579505		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	KCTD15	chr19	34302457	+	MSI2	chr17	55693331	+
5CDS-5UTR	ENST00000159111	ENST00000318596		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
5CDS-intron	ENST00000159111	ENST00000600275		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
intron-5UTR	ENST00000381759	ENST00000318596		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
intron-intron	ENST00000381759	ENST00000600275		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
5CDS-5UTR	ENST00000536461	ENST00000318596		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
5CDS-intron	ENST00000536461	ENST00000600275		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
intron-5UTR	ENST00000592175	ENST00000318596		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
intron-intron	ENST00000592175	ENST00000600275		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KDM4B	chr19	5138081	+	SLC25A42	chr19	19206900	+
Frame-shit	ENST00000294304	ENST00000356136		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000294304	ENST00000528420		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000294304	ENST00000533454		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000294304	ENST00000531818		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000294304	ENST00000532130		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
Frame-shit	ENST00000294304	ENST00000539288		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
5CDS-intron	ENST00000294304	ENST00000525872		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
5CDS-intron	ENST00000294304	ENST00000538870		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000529481	ENST00000356136		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000529481	ENST00000528420		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000529481	ENST00000533454		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000529481	ENST00000531818		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000529481	ENST00000532130		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-3CDS	ENST00000529481	ENST00000539288		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-intron	ENST00000529481	ENST00000525872		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
intron-intron	ENST00000529481	ENST00000538870		TCGA	RV	SKCM	TCGA-EB-A57M-01A	LRP5	chr11	68207384	+	UVRAG	chr11	75776754	+
5CDS-3UTR	ENST00000560281	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000560281	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000560281	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000560281	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000560281	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000560281	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000560281	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000560281	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000560281	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000407092	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000407092	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000407092	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000407092	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000407092	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000407092	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000407092	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000407092	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000407092	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000272369	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000272369	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000272369	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000272369	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000272369	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000272369	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000272369	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000272369	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000272369	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000488550	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000488550	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000488550	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000488550	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000488550	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000488550	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000488550	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000488550	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000488550	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000398506	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000398506	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000398506	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000398506	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000398506	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000398506	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000398506	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000398506	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000398506	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-3UTR	ENST00000444274	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-3UTR	ENST00000444274	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-3UTR	ENST00000444274	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000444274	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000444274	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000444274	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000444274	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000444274	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000444274	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000495021	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000495021	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-3UTR	ENST00000495021	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000495021	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000495021	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000495021	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000495021	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000495021	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
5CDS-intron	ENST00000495021	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-3UTR	ENST00000409517	ENST00000544262		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-3UTR	ENST00000409517	ENST00000295381		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-3UTR	ENST00000409517	ENST00000409202		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000409517	ENST00000456116		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000409517	ENST00000467265		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000409517	ENST00000409030		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000409517	ENST00000409220		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000409517	ENST00000497079		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
intron-intron	ENST00000409517	ENST00000479844		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	MEIS1	chr2	66739426	+	ARHGAP25	chr2	69043421	+
In-frame	ENST00000371018	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371018	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371018	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371018	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000371018	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371018	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371018	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-3CDS	ENST00000355977	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-3CDS	ENST00000355977	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-3CDS	ENST00000355977	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-3CDS	ENST00000355977	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-5UTR	ENST00000355977	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-3UTR	ENST00000355977	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5UTR-3UTR	ENST00000355977	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000357692	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000357692	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000357692	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000357692	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000357692	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000357692	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000357692	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401041	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401041	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401041	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401041	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000401041	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000401041	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000401041	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371016	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371016	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371016	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371016	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000371016	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371016	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371016	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371014	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371014	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371014	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371014	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000371014	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371014	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371014	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371012	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371012	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371012	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000371012	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000371012	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371012	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000371012	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401042	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401042	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401042	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000401042	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000401042	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000401042	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000401042	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000355356	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000355356	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000355356	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
In-frame	ENST00000355356	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-5UTR	ENST00000355356	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000355356	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
5CDS-3UTR	ENST00000355356	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-3CDS	ENST00000479067	ENST00000344610		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-3CDS	ENST00000479067	ENST00000371059		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-3CDS	ENST00000479067	ENST00000371060		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-3CDS	ENST00000479067	ENST00000349533		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-5UTR	ENST00000479067	ENST00000406510		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-3UTR	ENST00000479067	ENST00000462765		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
3UTR-3UTR	ENST00000479067	ENST00000371058		TCGA	RV	SKCM	TCGA-GF-A2C7-01A	MIER1	chr1	67405735	+	LEPR	chr1	66036156	+
intron-3CDS	ENST00000536774	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
intron-3CDS	ENST00000536774	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
intron-3CDS	ENST00000536774	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
intron-3CDS	ENST00000536774	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
intron-3CDS	ENST00000536774	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
intron-intron	ENST00000536774	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000327441	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000327441	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000327441	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000327441	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000327441	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000327441	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000539062	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000539062	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000539062	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000539062	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000539062	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000539062	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000556451	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000556451	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000556451	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000556451	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000556451	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000556451	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000396294	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000396294	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000396294	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000396294	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000396294	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000396294	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000545536	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000545536	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000545536	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000545536	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000545536	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000545536	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000537471	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000537471	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000537471	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000537471	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
In-frame	ENST00000537471	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000537471	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
3UTR-3CDS	ENST00000539174	ENST00000458591		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
3UTR-3CDS	ENST00000539174	ENST00000421551		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
3UTR-3CDS	ENST00000539174	ENST00000544052		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
3UTR-3CDS	ENST00000539174	ENST00000541123		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
3UTR-3CDS	ENST00000539174	ENST00000396629		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
3UTR-intron	ENST00000539174	ENST00000554486		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	MIPOL1	chr14	37739730	+	SCFD1	chr14	31118734	+
5CDS-intron	ENST00000252674	ENST00000455282		TCGA	RV	SKCM	TCGA-EB-A44O-01A	MLLT1	chr19	6262239	-	ZNF439	chr19	11977011	+
5CDS-intron	ENST00000252674	ENST00000592534		TCGA	RV	SKCM	TCGA-EB-A44O-01A	MLLT1	chr19	6262239	-	ZNF439	chr19	11977011	+
5CDS-intron	ENST00000252674	ENST00000304030		TCGA	RV	SKCM	TCGA-EB-A44O-01A	MLLT1	chr19	6262239	-	ZNF439	chr19	11977011	+
intron-intron	ENST00000585588	ENST00000455282		TCGA	RV	SKCM	TCGA-EB-A44O-01A	MLLT1	chr19	6262239	-	ZNF439	chr19	11977011	+
intron-intron	ENST00000585588	ENST00000592534		TCGA	RV	SKCM	TCGA-EB-A44O-01A	MLLT1	chr19	6262239	-	ZNF439	chr19	11977011	+
intron-intron	ENST00000585588	ENST00000304030		TCGA	RV	SKCM	TCGA-EB-A44O-01A	MLLT1	chr19	6262239	-	ZNF439	chr19	11977011	+
Frame-shit	ENST00000406961	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000406961	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000406961	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
intron-3CDS	ENST00000469850	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
intron-3CDS	ENST00000469850	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
intron-intron	ENST00000469850	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000405141	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000405141	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000405141	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000407230	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000407230	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000407230	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000538539	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000538539	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000538539	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000288599	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000288599	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000288599	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000348332	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000348332	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000348332	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000395856	ENST00000389048		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
Frame-shit	ENST00000395856	ENST00000431873		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5CDS-intron	ENST00000395856	ENST00000498037		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24985645	+	ALK	chr2	29940563	-
5UTR-intron	ENST00000452400	ENST00000276480		TCGA	RV	SKCM	TCGA-GN-A26C-01A	NCOA2	chr8	71208979	-	ST18	chr8	53159224	-
5UTR-intron	ENST00000452400	ENST00000522102		TCGA	RV	SKCM	TCGA-GN-A26C-01A	NCOA2	chr8	71208979	-	ST18	chr8	53159224	-
intron-intron	ENST00000267974	ENST00000276480		TCGA	RV	SKCM	TCGA-GN-A26C-01A	NCOA2	chr8	71208979	-	ST18	chr8	53159224	-
intron-intron	ENST00000267974	ENST00000522102		TCGA	RV	SKCM	TCGA-GN-A26C-01A	NCOA2	chr8	71208979	-	ST18	chr8	53159224	-
intron-intron	ENST00000524223	ENST00000276480		TCGA	RV	SKCM	TCGA-GN-A26C-01A	NCOA2	chr8	71208979	-	ST18	chr8	53159224	-
intron-intron	ENST00000524223	ENST00000522102		TCGA	RV	SKCM	TCGA-GN-A26C-01A	NCOA2	chr8	71208979	-	ST18	chr8	53159224	-
5CDS-3UTR	ENST00000252711	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000252711	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000252711	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000252711	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-3UTR	ENST00000471378	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000471378	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000471378	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000471378	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000404554	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000404554	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000404554	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000404554	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000307300	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000307300	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000307300	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000307300	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-3UTR	ENST00000407129	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000407129	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000407129	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000407129	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-01A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000252711	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000252711	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000252711	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000252711	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-3UTR	ENST00000471378	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000471378	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000471378	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000471378	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000404554	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000404554	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000404554	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000404554	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000307300	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000307300	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000307300	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000307300	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-3UTR	ENST00000407129	ENST00000418066		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000407129	ENST00000409920		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000407129	ENST00000394295		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000407129	ENST00000536030		TCGA	RV	SKCM	TCGA-HR-A2OH-06A	NDUFA10	chr2	240929491	-	ANXA4	chr2	70008652	+
3UTR-3CDS	ENST00000519049	ENST00000361421		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	NKAIN3	chr8	63161686	+	TOX	chr8	59720828	-
In-frame	ENST00000523211	ENST00000361421		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	NKAIN3	chr8	63161686	+	TOX	chr8	59720828	-
In-frame	ENST00000328472	ENST00000361421		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	NKAIN3	chr8	63161686	+	TOX	chr8	59720828	-
intron-3CDS	ENST00000326682	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000326682	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000326682	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000337331	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000337331	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000337331	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000476742	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000476742	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000476742	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000343113	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000343113	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000343113	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000383282	ENST00000539563		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-3CDS	ENST00000383282	ENST00000490035		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
intron-5UTR	ENST00000383282	ENST00000498645		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	NPHP3	chr3	132400758	-	LSAMP	chr3	115738487	-
In-frame	ENST00000487099	ENST00000373555		TCGA	RV	SKCM	TCGA-ER-A19T-01A	NR6A1	chr9	127533299	-	GOLGA1	chr9	127644848	-
In-frame	ENST00000373584	ENST00000373555		TCGA	RV	SKCM	TCGA-ER-A19T-01A	NR6A1	chr9	127533299	-	GOLGA1	chr9	127644848	-
In-frame	ENST00000416460	ENST00000373555		TCGA	RV	SKCM	TCGA-ER-A19T-01A	NR6A1	chr9	127533299	-	GOLGA1	chr9	127644848	-
In-frame	ENST00000344523	ENST00000373555		TCGA	RV	SKCM	TCGA-ER-A19T-01A	NR6A1	chr9	127533299	-	GOLGA1	chr9	127644848	-
Frame-shit	ENST00000554546	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554546	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554546	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554546	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554546	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000554546	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000356296	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000356296	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000356296	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000356296	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000356296	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000356296	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000557597	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000557597	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000557597	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000557597	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000557597	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000557597	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555238	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555238	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555238	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555238	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555238	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000555238	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000355058	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000355058	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000355058	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000355058	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000355058	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000355058	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000359560	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000359560	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000359560	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000359560	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000359560	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000359560	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555394	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555394	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555394	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555394	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555394	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000555394	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000454166	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000454166	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000454166	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000454166	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000454166	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000454166	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000544991	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000544991	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000544991	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000544991	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000544991	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000544991	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000560335	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000560335	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000560335	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000560335	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000560335	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000560335	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555738	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555738	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555738	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555738	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000555738	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000555738	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000559312	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000559312	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000559312	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000559312	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000559312	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000559312	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554521	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554521	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554521	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554521	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
Frame-shit	ENST00000554521	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000554521	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000535282	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000535282	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000535282	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000535282	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
In-frame	ENST00000535282	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-intron	ENST00000535282	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556600	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556600	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556600	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556600	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556600	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-intron	ENST00000556600	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556772	ENST00000541158		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556772	ENST00000342443		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556772	ENST00000298171		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556772	ENST00000554263		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-3CDS	ENST00000556772	ENST00000554435		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
intron-intron	ENST00000556772	ENST00000557096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	NUMB	chr14	73822334	-	TSHR	chr14	81528492	+
5CDS-5UTR	ENST00000381736	ENST00000426690		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-3UTR	ENST00000381736	ENST00000487852		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-3UTR	ENST00000381736	ENST00000380099		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-5UTR	ENST00000463407	ENST00000426690		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-3UTR	ENST00000463407	ENST00000487852		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-3UTR	ENST00000463407	ENST00000380099		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
3UTR-5UTR	ENST00000466694	ENST00000426690		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
3UTR-3UTR	ENST00000466694	ENST00000487852		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
3UTR-3UTR	ENST00000466694	ENST00000380099		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-5UTR	ENST00000381718	ENST00000426690		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-3UTR	ENST00000381718	ENST00000487852		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
5CDS-3UTR	ENST00000381718	ENST00000380099		TCGA	RV	SKCM	TCGA-EE-A29C-06A	NUPL1	chr13	25876018	+	KL	chr13	33627904	+
intron-intron	ENST00000397096	ENST00000535651		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000397096	ENST00000433979		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000397096	ENST00000538779		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000397096	ENST00000266497		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000397096	ENST00000536967		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
5UTR-intron	ENST00000427057	ENST00000535651		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
5UTR-intron	ENST00000427057	ENST00000433979		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
5UTR-intron	ENST00000427057	ENST00000538779		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
5UTR-intron	ENST00000427057	ENST00000266497		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
5UTR-intron	ENST00000427057	ENST00000536967		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000228820	ENST00000535651		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000228820	ENST00000433979		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000228820	ENST00000538779		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000228820	ENST00000266497		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000228820	ENST00000536967		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000447133	ENST00000535651		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000447133	ENST00000433979		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000447133	ENST00000538779		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000447133	ENST00000266497		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000447133	ENST00000536967		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000476985	ENST00000535651		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000476985	ENST00000433979		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000476985	ENST00000538779		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000476985	ENST00000266497		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
intron-intron	ENST00000476985	ENST00000536967		TCGA	RV	SKCM	TCGA-FS-A4F9-06A	PARP11	chr12	3973002	-	PIK3C2G	chr12	18793363	+
In-frame	ENST00000487257	ENST00000487694		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
In-frame	ENST00000487257	ENST00000461745		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
In-frame	ENST00000487257	ENST00000332191		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
5CDS-intron	ENST00000487257	ENST00000469233		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
Frame-shit	ENST00000311180	ENST00000487694		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
Frame-shit	ENST00000311180	ENST00000461745		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
Frame-shit	ENST00000311180	ENST00000332191		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
5CDS-intron	ENST00000311180	ENST00000469233		TCGA	RV	SKCM	TCGA-GF-A4EO-06A	PDE12	chr3	57545115	+	ROBO2	chr3	77671378	+
Frame-shit	ENST00000340635	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000340635	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000340635	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000360047	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000360047	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000360047	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000507116	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000507116	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000507116	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000502484	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000502484	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000502484	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000546160	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000546160	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000546160	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000502575	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000502575	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000502575	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000358923	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000358923	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
intron-intron	ENST00000358923	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000503258	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000503258	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000503258	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000405755	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000405755	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5CDS-intron	ENST00000405755	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000317118	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
intron-3CDS	ENST00000317118	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
intron-intron	ENST00000317118	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000503947	ENST00000333274		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5UTR-3CDS	ENST00000503947	ENST00000509503		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
5UTR-intron	ENST00000503947	ENST00000510359		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	PDE4D	chr5	58476421	-	EFNA5	chr5	106763210	-
Frame-shit	ENST00000253925	ENST00000264228		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	PPFIA1	chr11	70176425	+	SRD5A3	chr4	56225513	+
5CDS-3UTR	ENST00000253925	ENST00000514398		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	PPFIA1	chr11	70176425	+	SRD5A3	chr4	56225513	+
Frame-shit	ENST00000389547	ENST00000264228		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	PPFIA1	chr11	70176425	+	SRD5A3	chr4	56225513	+
5CDS-3UTR	ENST00000389547	ENST00000514398		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	PPFIA1	chr11	70176425	+	SRD5A3	chr4	56225513	+
intron-3CDS	ENST00000530548	ENST00000264228		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	PPFIA1	chr11	70176425	+	SRD5A3	chr4	56225513	+
intron-3UTR	ENST00000530548	ENST00000514398		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	PPFIA1	chr11	70176425	+	SRD5A3	chr4	56225513	+
5UTR-3CDS	ENST00000295902	ENST00000295903		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
5UTR-3CDS	ENST00000295902	ENST00000498707		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
5UTR-intron	ENST00000295902	ENST00000467257		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
5UTR-intron	ENST00000295902	ENST00000459780		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
intron-3CDS	ENST00000564377	ENST00000295903		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
intron-3CDS	ENST00000564377	ENST00000498707		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
intron-intron	ENST00000564377	ENST00000467257		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
intron-intron	ENST00000564377	ENST00000459780		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	PRICKLE2	chr3	64210586	-	ADAMTS9	chr3	64644467	-
Frame-shit	ENST00000371244	ENST00000294383		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	PRKAA2	chr1	57111154	+	USP24	chr1	55541196	-
Frame-shit	ENST00000371244	ENST00000407756		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	PRKAA2	chr1	57111154	+	USP24	chr1	55541196	-
5CDS-intron	ENST00000371244	ENST00000484447		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	PRKAA2	chr1	57111154	+	USP24	chr1	55541196	-
In-frame	ENST00000257181	ENST00000394233		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
In-frame	ENST00000257181	ENST00000454898		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
5CDS-intron	ENST00000257181	ENST00000536817		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
5CDS-intron	ENST00000257181	ENST00000370214		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
5CDS-intron	ENST00000257181	ENST00000315713		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
5CDS-intron	ENST00000257181	ENST00000484213		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000474048	ENST00000394233		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000474048	ENST00000454898		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000474048	ENST00000536817		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000474048	ENST00000370214		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000474048	ENST00000315713		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000474048	ENST00000484213		TCGA	RV	SKCM	TCGA-EB-A551-01A	PRPF38A	chr1	52871511	+	ABCD3	chr1	94924163	+
In-frame	ENST00000394936	ENST00000296702		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	PSAP	chr10	73576058	-	TCERG1	chr5	145888708	+
In-frame	ENST00000394936	ENST00000394421		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	PSAP	chr10	73576058	-	TCERG1	chr5	145888708	+
5CDS-intron	ENST00000394936	ENST00000509787		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	PSAP	chr10	73576058	-	TCERG1	chr5	145888708	+
In-frame	ENST00000394934	ENST00000296702		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	PSAP	chr10	73576058	-	TCERG1	chr5	145888708	+
In-frame	ENST00000394934	ENST00000394421		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	PSAP	chr10	73576058	-	TCERG1	chr5	145888708	+
5CDS-intron	ENST00000394934	ENST00000509787		TCGA	RV	SKCM	TCGA-EB-A5UL-06A	PSAP	chr10	73576058	-	TCERG1	chr5	145888708	+
5CDS-5UTR	ENST00000544172	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000544172	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000544172	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000544172	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000397501	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000397501	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000397501	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000397501	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000338238	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000338238	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000338238	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000338238	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000346049	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000346049	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000346049	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000346049	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000420218	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000420218	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000420218	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000420218	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000517339	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000517339	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000517339	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
5CDS-5UTR	ENST00000517339	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000519650	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000519650	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000519650	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000519650	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000397497	ENST00000392237		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000397497	ENST00000358299		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000397497	ENST00000425178		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
intron-5UTR	ENST00000397497	ENST00000418208		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	PTK2B	chr8	27277590	+	ICA1L	chr2	203693739	-
In-frame	ENST00000367689	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000367689	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000367689	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
In-frame	ENST00000357444	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000357444	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000357444	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
In-frame	ENST00000251507	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000251507	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000251507	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000325589	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000325589	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000325589	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000367686	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000367686	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000367686	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000367687	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000367687	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000367687	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000347255	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000347255	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000347255	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000489615	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000489615	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000489615	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000478442	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000478442	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000478442	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000486220	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000486220	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000486220	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000392064	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000392064	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000392064	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-3CDS	ENST00000367688	ENST00000361951		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-5UTR	ENST00000367688	ENST00000239457		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
intron-intron	ENST00000367688	ENST00000471476		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RABGAP1L	chr1	174274265	+	DARS2	chr1	173795825	+
Frame-shit	ENST00000404969	ENST00000396556		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
Frame-shit	ENST00000404969	ENST00000438237		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
5CDS-intron	ENST00000404969	ENST00000467647		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000437042	ENST00000396556		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000437042	ENST00000438237		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-intron	ENST00000437042	ENST00000467647		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000330688	ENST00000396556		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000330688	ENST00000438237		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-intron	ENST00000330688	ENST00000467647		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000462272	ENST00000396556		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000462272	ENST00000438237		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-intron	ENST00000462272	ENST00000467647		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000458646	ENST00000396556		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000458646	ENST00000438237		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
intron-intron	ENST00000458646	ENST00000467647		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	RARB	chr3	25216066	+	OSBPL10	chr3	31921322	-
Frame-shit	ENST00000357387	ENST00000379589		TCGA	RV	SKCM	TCGA-EE-A184-06A	RICTOR	chr5	38966743	-	LHFP	chr13	39952663	-
5CDS-intron	ENST00000357387	ENST00000495922		TCGA	RV	SKCM	TCGA-EE-A184-06A	RICTOR	chr5	38966743	-	LHFP	chr13	39952663	-
Frame-shit	ENST00000296782	ENST00000379589		TCGA	RV	SKCM	TCGA-EE-A184-06A	RICTOR	chr5	38966743	-	LHFP	chr13	39952663	-
5CDS-intron	ENST00000296782	ENST00000495922		TCGA	RV	SKCM	TCGA-EE-A184-06A	RICTOR	chr5	38966743	-	LHFP	chr13	39952663	-
intron-3CDS	ENST00000503698	ENST00000379589		TCGA	RV	SKCM	TCGA-EE-A184-06A	RICTOR	chr5	38966743	-	LHFP	chr13	39952663	-
intron-intron	ENST00000503698	ENST00000495922		TCGA	RV	SKCM	TCGA-EE-A184-06A	RICTOR	chr5	38966743	-	LHFP	chr13	39952663	-
5CDS-5UTR	ENST00000369291	ENST00000324862		TCGA	RV	SKCM	TCGA-GN-A26A-06A	RNF115	chr1	145682094	+	PRPF3	chr1	150297353	+
5CDS-5UTR	ENST00000369291	ENST00000543398		TCGA	RV	SKCM	TCGA-GN-A26A-06A	RNF115	chr1	145682094	+	PRPF3	chr1	150297353	+
5CDS-5UTR	ENST00000369291	ENST00000414970		TCGA	RV	SKCM	TCGA-GN-A26A-06A	RNF115	chr1	145682094	+	PRPF3	chr1	150297353	+
5CDS-intron	ENST00000369291	ENST00000467329		TCGA	RV	SKCM	TCGA-GN-A26A-06A	RNF115	chr1	145682094	+	PRPF3	chr1	150297353	+
Frame-shit	ENST00000361234	ENST00000298125		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
5CDS-intron	ENST00000361234	ENST00000460145		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
5UTR-3CDS	ENST00000392465	ENST00000298125		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
5UTR-intron	ENST00000392465	ENST00000460145		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
Frame-shit	ENST00000392464	ENST00000298125		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
5CDS-intron	ENST00000392464	ENST00000460145		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
Frame-shit	ENST00000555076	ENST00000298125		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
5CDS-intron	ENST00000555076	ENST00000460145		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF34	chr12	121838021	+	WDFY2	chr13	52234732	+
Frame-shit	ENST00000464233	ENST00000357599		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000464233	ENST00000195173		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000464233	ENST00000451055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
5CDS-intron	ENST00000464233	ENST00000465147		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000436010	ENST00000357599		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000436010	ENST00000195173		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000436010	ENST00000451055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
5CDS-intron	ENST00000436010	ENST00000465147		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000495273	ENST00000357599		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000495273	ENST00000195173		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000495273	ENST00000451055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
5CDS-intron	ENST00000495273	ENST00000465147		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000467549	ENST00000357599		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000467549	ENST00000195173		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
Frame-shit	ENST00000467549	ENST00000451055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
5CDS-intron	ENST00000467549	ENST00000465147		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
intron-3CDS	ENST00000466906	ENST00000357599		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
intron-3CDS	ENST00000466906	ENST00000195173		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
intron-3CDS	ENST00000466906	ENST00000451055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
intron-intron	ENST00000466906	ENST00000465147		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	ROBO1	chr3	78688894	-	SEMA5B	chr3	122634737	-
In-frame	ENST00000308488	ENST00000534064		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
In-frame	ENST00000308488	ENST00000535943		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000308488	ENST00000525931		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000308488	ENST00000529807		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000308488	ENST00000527522		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
In-frame	ENST00000360355	ENST00000534064		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
In-frame	ENST00000360355	ENST00000535943		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000360355	ENST00000525931		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000360355	ENST00000529807		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000360355	ENST00000527522		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000480887	ENST00000534064		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
intron-3CDS	ENST00000480887	ENST00000535943		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
intron-intron	ENST00000480887	ENST00000525931		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
intron-intron	ENST00000480887	ENST00000529807		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
intron-intron	ENST00000480887	ENST00000527522		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5UTR-3CDS	ENST00000530604	ENST00000534064		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5UTR-3CDS	ENST00000530604	ENST00000535943		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5UTR-intron	ENST00000530604	ENST00000525931		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5UTR-intron	ENST00000530604	ENST00000529807		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5UTR-intron	ENST00000530604	ENST00000527522		TCGA	RV	SKCM	TCGA-EB-A57M-01A	RSF1	chr11	77531574	-	INTS4	chr11	77594998	-
5CDS-intron	ENST00000278407	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000278407	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000340687	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000340687	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000378323	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000378323	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000378324	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
5CDS-intron	ENST00000378324	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000403558	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000403558	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000531605	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
intron-intron	ENST00000531605	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	SERPING1	chr11	57382326	+	CHD1	chr5	98219587	-
Frame-shit	ENST00000264554	ENST00000371953		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SHC2	chr19	438718	-	PTEN	chr10	89685270	+
5CDS-intron	ENST00000264554	ENST00000472832		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SHC2	chr19	438718	-	PTEN	chr10	89685270	+
intron-5UTR	ENST00000380006	ENST00000379312		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-intron	ENST00000380006	ENST00000566522		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000380006	ENST00000042381		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000380006	ENST00000540839		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000380006	ENST00000422602		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000380006	ENST00000428437		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000356721	ENST00000379312		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-intron	ENST00000356721	ENST00000566522		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000356721	ENST00000042381		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000356721	ENST00000540839		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000356721	ENST00000422602		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000356721	ENST00000428437		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5UTR-5UTR	ENST00000394725	ENST00000379312		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5UTR-intron	ENST00000394725	ENST00000566522		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5UTR-5UTR	ENST00000394725	ENST00000042381		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5UTR-5UTR	ENST00000394725	ENST00000540839		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5UTR-5UTR	ENST00000394725	ENST00000422602		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5UTR-5UTR	ENST00000394725	ENST00000428437		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000573005	ENST00000379312		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-intron	ENST00000573005	ENST00000566522		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000573005	ENST00000042381		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000573005	ENST00000540839		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000573005	ENST00000422602		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
intron-5UTR	ENST00000573005	ENST00000428437		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	SIAH1	chr16	48419115	-	FAM65A	chr16	67572327	+
5CDS-5UTR	ENST00000336915	ENST00000258947		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000336915	ENST00000509507		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000336915	ENST00000448105		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000336915	ENST00000416445		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-intron	ENST00000336915	ENST00000508679		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-intron	ENST00000336915	ENST00000510997		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000584924	ENST00000258947		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000584924	ENST00000509507		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000584924	ENST00000448105		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-5UTR	ENST00000584924	ENST00000416445		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-intron	ENST00000584924	ENST00000508679		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
5CDS-intron	ENST00000584924	ENST00000510997		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	SKAP1	chr17	46423267	-	CALCOCO2	chr17	46919060	+
intron-3CDS	ENST00000255559	ENST00000403627		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-3CDS	ENST00000255559	ENST00000405159		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-5UTR	ENST00000255559	ENST00000583178		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-5UTR	ENST00000255559	ENST00000580032		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-intron	ENST00000255559	ENST00000581110		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-intron	ENST00000255559	ENST00000583024		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
Frame-shit	ENST00000542342	ENST00000403627		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
Frame-shit	ENST00000542342	ENST00000405159		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
5CDS-5UTR	ENST00000542342	ENST00000583178		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
5CDS-5UTR	ENST00000542342	ENST00000580032		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
5CDS-intron	ENST00000542342	ENST00000581110		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
5CDS-intron	ENST00000542342	ENST00000583024		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-3CDS	ENST00000579988	ENST00000403627		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-3CDS	ENST00000579988	ENST00000405159		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-5UTR	ENST00000579988	ENST00000583178		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-5UTR	ENST00000579988	ENST00000580032		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-intron	ENST00000579988	ENST00000581110		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-intron	ENST00000579988	ENST00000583024		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-3CDS	ENST00000579732	ENST00000403627		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-3CDS	ENST00000579732	ENST00000405159		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-5UTR	ENST00000579732	ENST00000583178		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-5UTR	ENST00000579732	ENST00000580032		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-intron	ENST00000579732	ENST00000581110		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
intron-intron	ENST00000579732	ENST00000583024		TCGA	RV	SKCM	TCGA-WE-A8K6-06A	SLC39A11	chr17	70943870	-	FAM104A	chr17	71223403	-
5CDS-5UTR	ENST00000254480	ENST00000351231		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	SMARCC1	chr3	47814307	-	CDC25A	chr3	48229705	-
5CDS-5UTR	ENST00000254480	ENST00000302506		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	SMARCC1	chr3	47814307	-	CDC25A	chr3	48229705	-
5CDS-intron	ENST00000254480	ENST00000459900		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	SMARCC1	chr3	47814307	-	CDC25A	chr3	48229705	-
5UTR-5UTR	ENST00000425518	ENST00000351231		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	SMARCC1	chr3	47814307	-	CDC25A	chr3	48229705	-
5UTR-5UTR	ENST00000425518	ENST00000302506		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	SMARCC1	chr3	47814307	-	CDC25A	chr3	48229705	-
5UTR-intron	ENST00000425518	ENST00000459900		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	SMARCC1	chr3	47814307	-	CDC25A	chr3	48229705	-
Frame-shit	ENST00000541742	ENST00000373297		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
Frame-shit	ENST00000541742	ENST00000314607		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
5CDS-3UTR	ENST00000541742	ENST00000482131		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
In-frame	ENST00000490107	ENST00000373297		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
In-frame	ENST00000490107	ENST00000314607		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
5CDS-3UTR	ENST00000490107	ENST00000482131		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
In-frame	ENST00000388985	ENST00000373297		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
In-frame	ENST00000388985	ENST00000314607		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
5CDS-3UTR	ENST00000388985	ENST00000482131		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
intron-3CDS	ENST00000366517	ENST00000373297		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
intron-3CDS	ENST00000366517	ENST00000314607		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
intron-3UTR	ENST00000366517	ENST00000482131		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
In-frame	ENST00000403792	ENST00000373297		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
In-frame	ENST00000403792	ENST00000314607		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
5CDS-3UTR	ENST00000403792	ENST00000482131		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	SMYD3	chr1	246490503	-	ZMYM4	chr1	35835630	+
5CDS-intron	ENST00000356805	ENST00000280653		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	SPTBN1	chr2	54896812	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000356805	ENST00000471841		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	SPTBN1	chr2	54896812	+	MFN1	chr3	179096011	+
5CDS-intron	ENST00000356805	ENST00000263969		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	SPTBN1	chr2	54896812	+	MFN1	chr3	179096011	+
intron-intron	ENST00000333896	ENST00000280653		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	SPTBN1	chr2	54896812	+	MFN1	chr3	179096011	+
intron-intron	ENST00000333896	ENST00000471841		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	SPTBN1	chr2	54896812	+	MFN1	chr3	179096011	+
intron-intron	ENST00000333896	ENST00000263969		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	SPTBN1	chr2	54896812	+	MFN1	chr3	179096011	+
In-frame	ENST00000263736	ENST00000378954		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000263736	ENST00000406122		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000263736	ENST00000402054		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000263736	ENST00000539122		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000263736	ENST00000332337		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000263736	ENST00000419554		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000263736	ENST00000452935		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-intron	ENST00000263736	ENST00000546051		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-intron	ENST00000263736	ENST00000486927		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
Frame-shit	ENST00000535761	ENST00000378954		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000535761	ENST00000406122		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000535761	ENST00000402054		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000535761	ENST00000539122		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000535761	ENST00000332337		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000535761	ENST00000419554		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-3UTR	ENST00000535761	ENST00000452935		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-intron	ENST00000535761	ENST00000546051		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-intron	ENST00000535761	ENST00000486927		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3CDS	ENST00000490133	ENST00000378954		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3UTR	ENST00000490133	ENST00000406122		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3UTR	ENST00000490133	ENST00000402054		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3UTR	ENST00000490133	ENST00000539122		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3UTR	ENST00000490133	ENST00000332337		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3UTR	ENST00000490133	ENST00000419554		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-3UTR	ENST00000490133	ENST00000452935		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-intron	ENST00000490133	ENST00000546051		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
intron-intron	ENST00000490133	ENST00000486927		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45704132	-	ATL2	chr2	38523255	-
5CDS-5UTR	ENST00000522695	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000522695	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000522695	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000522695	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000524300	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000524300	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000524300	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000524300	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000523558	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000523558	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000523558	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000523558	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521210	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521210	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521210	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000521210	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000355780	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000355780	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000355780	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000355780	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000519961	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000519961	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000519961	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000519961	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521727	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521727	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521727	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000521727	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521451	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521451	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000521451	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000521451	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000522509	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000522509	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000522509	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000522509	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000517542	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000517542	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-5UTR	ENST00000517542	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
5CDS-intron	ENST00000517542	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000524104	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000524104	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000524104	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-intron	ENST00000524104	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000522962	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000522962	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000522962	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-intron	ENST00000522962	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000521419	ENST00000439951		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000521419	ENST00000313733		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-5UTR	ENST00000521419	ENST00000358053		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
intron-intron	ENST00000521419	ENST00000471817		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	STAU2	chr8	74507401	-	OSBPL2	chr20	60831113	+
Frame-shit	ENST00000254250	ENST00000220772		TCGA	RV	SKCM	TCGA-ER-A42H-01A	THAP1	chr8	42698167	-	SFRP1	chr8	41161057	-
Frame-shit	ENST00000254250	ENST00000379845		TCGA	RV	SKCM	TCGA-ER-A42H-01A	THAP1	chr8	42698167	-	SFRP1	chr8	41161057	-
Frame-shit	ENST00000345117	ENST00000220772		TCGA	RV	SKCM	TCGA-ER-A42H-01A	THAP1	chr8	42698167	-	SFRP1	chr8	41161057	-
Frame-shit	ENST00000345117	ENST00000379845		TCGA	RV	SKCM	TCGA-ER-A42H-01A	THAP1	chr8	42698167	-	SFRP1	chr8	41161057	-
intron-3CDS	ENST00000532093	ENST00000220772		TCGA	RV	SKCM	TCGA-ER-A42H-01A	THAP1	chr8	42698167	-	SFRP1	chr8	41161057	-
intron-3CDS	ENST00000532093	ENST00000379845		TCGA	RV	SKCM	TCGA-ER-A42H-01A	THAP1	chr8	42698167	-	SFRP1	chr8	41161057	-
Frame-shit	ENST00000551577	ENST00000258198		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000551577	ENST00000379482		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000551577	ENST00000443351		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-5UTR	ENST00000551577	ENST00000570201		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000551577	ENST00000440564		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
Frame-shit	ENST00000266534	ENST00000258198		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000266534	ENST00000379482		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000266534	ENST00000443351		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-5UTR	ENST00000266534	ENST00000570201		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000266534	ENST00000440564		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
In-frame	ENST00000536799	ENST00000258198		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000536799	ENST00000379482		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000536799	ENST00000443351		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-5UTR	ENST00000536799	ENST00000570201		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
5CDS-intron	ENST00000536799	ENST00000440564		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
intron-3CDS	ENST00000546978	ENST00000258198		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
intron-intron	ENST00000546978	ENST00000379482		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
intron-intron	ENST00000546978	ENST00000443351		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
intron-5UTR	ENST00000546978	ENST00000570201		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
intron-intron	ENST00000546978	ENST00000440564		TCGA	RV	SKCM	TCGA-ER-A197-06A	TMEM117	chr12	44238731	+	DYNC1LI2	chr16	66764126	-
Frame-shit	ENST00000261180	ENST00000229179		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000261180	ENST00000378905		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000261180	ENST00000539906		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
5CDS-intron	ENST00000261180	ENST00000401003		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-3CDS	ENST00000549138	ENST00000229179		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-3CDS	ENST00000549138	ENST00000378905		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-3CDS	ENST00000549138	ENST00000539906		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-intron	ENST00000549138	ENST00000401003		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000261180	ENST00000229179		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000261180	ENST00000378905		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000261180	ENST00000539906		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
5CDS-intron	ENST00000261180	ENST00000401003		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-3CDS	ENST00000549138	ENST00000229179		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-3CDS	ENST00000549138	ENST00000378905		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-3CDS	ENST00000549138	ENST00000539906		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
3UTR-intron	ENST00000549138	ENST00000401003		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRHDE	chr12	72962436	+	NUP107	chr12	69128488	+
Frame-shit	ENST00000258796	ENST00000330579		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000258796	ENST00000535343		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000258796	ENST00000538784		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000407643	ENST00000330579		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000407643	ENST00000535343		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000407643	ENST00000538784		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000403167	ENST00000330579		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000403167	ENST00000535343		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000403167	ENST00000538784		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000477439	ENST00000330579		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000477439	ENST00000535343		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000477439	ENST00000538784		TCGA	RV	SKCM	TCGA-EB-A3Y7-01A	TTYH3	chr7	2671912	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000371756	ENST00000449833		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000409161		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000423696		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000338508		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000409530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000449116		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000357171		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000468619		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000449833		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000409161		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000423696		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000338508		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000409530		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000449116		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000357171		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000468619		TCGA	RV	SKCM	TCGA-ER-A19T-06A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
3UTR-intron	ENST00000331803	ENST00000311028		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000331803	ENST00000395923		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000331803	ENST00000220931		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000331803	ENST00000521599		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000331803	ENST00000522951		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000331803	ENST00000519508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000331803	ENST00000521371		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000311028		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000395923		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000220931		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000521599		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000522951		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000519508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
3UTR-intron	ENST00000341253	ENST00000521371		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000311028		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000395923		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000220931		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000521599		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000522951		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000519508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000395564	ENST00000521371		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000311028		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000395923		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000220931		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000521599		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000522951		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000519508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000482015	ENST00000521371		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000311028		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000395923		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000220931		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000521599		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000522951		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000519508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
5CDS-intron	ENST00000429491	ENST00000521371		TCGA	RV	SKCM	TCGA-ER-A19C-06A	UPP1	chr7	48148012	+	NCALD	chr8	102813898	-
Frame-shit	ENST00000261637	ENST00000547776		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
Frame-shit	ENST00000261637	ENST00000329257		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
Frame-shit	ENST00000261637	ENST00000547010		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000341752		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000549558		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000550693		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000549025		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000549493		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000547446		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000333732		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000546568		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000332712		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000546960		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
5CDS-intron	ENST00000261637	ENST00000550833		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	UTP20	chr12	101711441	+	ANKS1B	chr12	99447087	-
intron-5UTR	ENST00000466084	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
intron-5UTR	ENST00000466084	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
intron-intron	ENST00000466084	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
intron-intron	ENST00000466084	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
intron-intron	ENST00000466084	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
intron-intron	ENST00000466084	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-5UTR	ENST00000296127	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-5UTR	ENST00000296127	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000296127	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000296127	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000296127	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000296127	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-5UTR	ENST00000424952	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-5UTR	ENST00000424952	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000424952	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000424952	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000424952	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000424952	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-5UTR	ENST00000342790	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-5UTR	ENST00000342790	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000342790	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000342790	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000342790	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
5UTR-intron	ENST00000342790	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ZDHHC3	chr3	45017425	-	ATXN7	chr3	63884075	+
In-frame	ENST00000589717	ENST00000430939		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
In-frame	ENST00000589717	ENST00000221742		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000589717	ENST00000600144		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000589717	ENST00000598504		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5CDS-5UTR	ENST00000589717	ENST00000544886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5UTR-3CDS	ENST00000355650	ENST00000430939		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5UTR-3CDS	ENST00000355650	ENST00000221742		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5UTR-5UTR	ENST00000355650	ENST00000600144		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5UTR-5UTR	ENST00000355650	ENST00000598504		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
5UTR-5UTR	ENST00000355650	ENST00000544886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	ZNF253	chr19	19976808	+	SLC1A6	chr19	15083729	-
intron-3CDS	ENST00000594022	ENST00000334126		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
intron-3CDS	ENST00000594022	ENST00000313663		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000594022	ENST00000542452		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000594022	ENST00000539061		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
Frame-shit	ENST00000358491	ENST00000334126		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
Frame-shit	ENST00000358491	ENST00000313663		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
5CDS-intron	ENST00000358491	ENST00000542452		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
5CDS-intron	ENST00000358491	ENST00000539061		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
Frame-shit	ENST00000597078	ENST00000334126		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
Frame-shit	ENST00000597078	ENST00000313663		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
5CDS-intron	ENST00000597078	ENST00000542452		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
5CDS-intron	ENST00000597078	ENST00000539061		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688576	+	C2CD3	chr11	73809300	-
5UTR-5UTR	ENST00000269973	ENST00000299505		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF45	chr19	44428390	-	KIAA0355	chr19	34790584	+
5UTR-3UTR	ENST00000269973	ENST00000592124		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF45	chr19	44428390	-	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000589703	ENST00000299505		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF45	chr19	44428390	-	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000589703	ENST00000592124		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF45	chr19	44428390	-	KIAA0355	chr19	34790584	+
intron-5UTR	ENST00000588432	ENST00000299505		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF45	chr19	44428390	-	KIAA0355	chr19	34790584	+
intron-3UTR	ENST00000588432	ENST00000592124		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ZNF45	chr19	44428390	-	KIAA0355	chr19	34790584	+
In-frame	ENST00000504830	ENST00000265109		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000504830	ENST00000512629		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000504830	ENST00000428746		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000504830	ENST00000503673		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000504830	ENST00000515799		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000504830	ENST00000506376		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000504830	ENST00000507276		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000504830	ENST00000397449		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000352040	ENST00000265109		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000352040	ENST00000512629		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000352040	ENST00000428746		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000352040	ENST00000503673		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000352040	ENST00000515799		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000352040	ENST00000506376		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000352040	ENST00000507276		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000352040	ENST00000397449		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3CDS	ENST00000504582	ENST00000265109		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3CDS	ENST00000504582	ENST00000512629		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3CDS	ENST00000504582	ENST00000428746		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3CDS	ENST00000504582	ENST00000503673		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3CDS	ENST00000504582	ENST00000515799		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3CDS	ENST00000504582	ENST00000506376		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3UTR	ENST00000504582	ENST00000507276		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
intron-3UTR	ENST00000504582	ENST00000397449		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000515401	ENST00000265109		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000515401	ENST00000512629		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000515401	ENST00000428746		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000515401	ENST00000503673		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000515401	ENST00000515799		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
In-frame	ENST00000515401	ENST00000506376		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000515401	ENST00000507276		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-3UTR	ENST00000515401	ENST00000397449		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	ADAMTS12	chr5	33881224	-	RAI14	chr5	34757573	+
5CDS-intron	ENST00000366535	ENST00000322067		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
5CDS-5UTR	ENST00000366535	ENST00000469520		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
5CDS-intron	ENST00000366535	ENST00000354807		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
5CDS-intron	ENST00000366535	ENST00000544404		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
5CDS-intron	ENST00000366535	ENST00000414869		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
5CDS-intron	ENST00000366535	ENST00000482136		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
intron-intron	ENST00000462358	ENST00000322067		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
intron-5UTR	ENST00000462358	ENST00000469520		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
intron-intron	ENST00000462358	ENST00000354807		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
intron-intron	ENST00000462358	ENST00000544404		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
intron-intron	ENST00000462358	ENST00000414869		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
intron-intron	ENST00000462358	ENST00000482136		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	ADSS	chr1	244614937	-	BPNT1	chr1	220263293	-
5UTR-3CDS	ENST00000247087	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3CDS	ENST00000247087	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3UTR	ENST00000247087	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3CDS	ENST00000374011	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3CDS	ENST00000374011	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3UTR	ENST00000374011	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3CDS	ENST00000480033	ENST00000371073		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3CDS	ENST00000480033	ENST00000290039		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
5UTR-3UTR	ENST00000480033	ENST00000495994		TCGA	RV	SKCM	TCGA-EB-A82C-01A	AHDC1	chr1	27929908	-	CACHD1	chr1	65113484	+
In-frame	ENST00000458497	ENST00000296543		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
In-frame	ENST00000458497	ENST00000398947		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000458497	ENST00000480277		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000458497	ENST00000515576		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
In-frame	ENST00000177648	ENST00000296543		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
In-frame	ENST00000177648	ENST00000398947		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000177648	ENST00000480277		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000177648	ENST00000515576		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
In-frame	ENST00000504176	ENST00000296543		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
In-frame	ENST00000504176	ENST00000398947		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000504176	ENST00000480277		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
5CDS-intron	ENST00000504176	ENST00000515576		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
intron-3CDS	ENST00000505912	ENST00000296543		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
intron-3CDS	ENST00000505912	ENST00000398947		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
intron-intron	ENST00000505912	ENST00000480277		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
intron-intron	ENST00000505912	ENST00000515576		TCGA	RV	SKCM	TCGA-W3-A825-06A	ALPK1	chr4	113362261	+	NAA15	chr4	140291365	+
Frame-shit	ENST00000355303	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000355303	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000355303	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000355303	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000355303	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5CDS-5UTR	ENST00000355303	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000398543	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000398543	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000398543	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000398543	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000398543	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-5UTR	ENST00000398543	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000538023	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000538023	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000538023	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000538023	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
Frame-shit	ENST00000538023	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5CDS-5UTR	ENST00000538023	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000316296	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000316296	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000316296	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000316296	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000316296	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000316296	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000530676	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000530676	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000530676	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000530676	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000530676	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000530676	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000531349	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000531349	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000531349	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000531349	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000531349	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000531349	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000525494	ENST00000361961		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000525494	ENST00000395670		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000525494	ENST00000544797		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000525494	ENST00000361418		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-3CDS	ENST00000525494	ENST00000541463		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
intron-5UTR	ENST00000525494	ENST00000547745		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	ANO1	chr11	69924820	+	KIF21A	chr12	39705355	-
5UTR-3CDS	ENST00000561069	ENST00000301466		TCGA	RV	SKCM	TCGA-RP-A695-06A	APBA2	chr15	29288009	+	SOAT2	chr12	53512674	+
5UTR-3CDS	ENST00000558402	ENST00000301466		TCGA	RV	SKCM	TCGA-RP-A695-06A	APBA2	chr15	29288009	+	SOAT2	chr12	53512674	+
5UTR-3CDS	ENST00000558330	ENST00000301466		TCGA	RV	SKCM	TCGA-RP-A695-06A	APBA2	chr15	29288009	+	SOAT2	chr12	53512674	+
5UTR-3CDS	ENST00000411764	ENST00000301466		TCGA	RV	SKCM	TCGA-RP-A695-06A	APBA2	chr15	29288009	+	SOAT2	chr12	53512674	+
5UTR-3CDS	ENST00000558259	ENST00000301466		TCGA	RV	SKCM	TCGA-RP-A695-06A	APBA2	chr15	29288009	+	SOAT2	chr12	53512674	+
Frame-shit	ENST00000334344	ENST00000543942		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
Frame-shit	ENST00000334344	ENST00000333722		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
5CDS-intron	ENST00000334344	ENST00000536975		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
5UTR-3CDS	ENST00000422737	ENST00000543942		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
5UTR-3CDS	ENST00000422737	ENST00000333722		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
5UTR-intron	ENST00000422737	ENST00000536975		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-3CDS	ENST00000479608	ENST00000543942		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-3CDS	ENST00000479608	ENST00000333722		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-intron	ENST00000479608	ENST00000536975		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-3CDS	ENST00000444670	ENST00000543942		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-3CDS	ENST00000444670	ENST00000333722		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-intron	ENST00000444670	ENST00000536975		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-3CDS	ENST00000457135	ENST00000543942		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-3CDS	ENST00000457135	ENST00000333722		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
intron-intron	ENST00000457135	ENST00000536975		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	ARID2	chr12	46125097	+	C12orf56	chr12	64746836	-
Frame-shit	ENST00000335221	ENST00000253247		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000335221	ENST00000581966		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000335221	ENST00000535137		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
Frame-shit	ENST00000321892	ENST00000253247		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000321892	ENST00000581966		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000321892	ENST00000535137		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
Frame-shit	ENST00000306378	ENST00000253247		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000306378	ENST00000581966		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000306378	ENST00000535137		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
Frame-shit	ENST00000424123	ENST00000253247		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000424123	ENST00000581966		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
5CDS-intron	ENST00000424123	ENST00000535137		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
intron-3CDS	ENST00000577770	ENST00000253247		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
intron-intron	ENST00000577770	ENST00000581966		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
intron-intron	ENST00000577770	ENST00000535137		TCGA	RV	SKCM	TCGA-ER-A19W-06A	BPTF	chr17	65822453	+	NOL11	chr17	65739595	+
Frame-shit	ENST00000288602	ENST00000265395		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	BRAF	chr7	140500162	-	HIBADH	chr7	27582719	-
5CDS-5UTR	ENST00000314100	ENST00000449981		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000314100	ENST00000359357		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000314100	ENST00000441566		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-5UTR	ENST00000481247	ENST00000449981		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000481247	ENST00000359357		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000481247	ENST00000441566		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-5UTR	ENST00000419706	ENST00000449981		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000419706	ENST00000359357		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000419706	ENST00000441566		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-5UTR	ENST00000408958	ENST00000449981		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000408958	ENST00000359357		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000408958	ENST00000441566		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-5UTR	ENST00000403056	ENST00000449981		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000403056	ENST00000359357		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
5CDS-intron	ENST00000403056	ENST00000441566		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	BTBD9	chr6	38545376	-	DNAH8	chr6	38690552	+
In-frame	ENST00000383165	ENST00000394236		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	C3orf72	chr3	138666306	+	PROS1	chr3	93646251	-
5CDS-5UTR	ENST00000383165	ENST00000407433		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	C3orf72	chr3	138666306	+	PROS1	chr3	93646251	-
In-frame	ENST00000420324	ENST00000309930		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000420324	ENST00000401647		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000420324	ENST00000335693		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000420324	ENST00000464028		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000420324	ENST00000540834		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000430738	ENST00000309930		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000430738	ENST00000401647		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000430738	ENST00000335693		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000430738	ENST00000464028		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000430738	ENST00000540834		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000435376	ENST00000309930		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000435376	ENST00000401647		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000435376	ENST00000335693		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000435376	ENST00000464028		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000435376	ENST00000540834		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000539619	ENST00000309930		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000539619	ENST00000401647		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000539619	ENST00000335693		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000539619	ENST00000464028		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000539619	ENST00000540834		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000348904	ENST00000309930		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000348904	ENST00000401647		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
In-frame	ENST00000348904	ENST00000335693		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000348904	ENST00000464028		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5CDS-intron	ENST00000348904	ENST00000540834		TCGA	RV	SKCM	TCGA-DA-A95V-06A	C7orf57	chr7	48089574	+	C7orf10	chr7	40535883	+
5UTR-3CDS	ENST00000277198	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
5UTR-3CDS	ENST00000297979	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
intron-3CDS	ENST00000375315	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
intron-3CDS	ENST00000395357	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
intron-3CDS	ENST00000425634	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
intron-3CDS	ENST00000433691	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
intron-3CDS	ENST00000473778	ENST00000442267		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	C9orf3	chr9	97489033	+	TBC1D9	chr4	141622768	-
5UTR-3CDS	ENST00000327483	ENST00000317447		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
5UTR-3CDS	ENST00000327483	ENST00000406948		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
5UTR-5UTR	ENST00000327483	ENST00000378345		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
5UTR-intron	ENST00000327483	ENST00000537116		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000268679	ENST00000317447		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000268679	ENST00000406948		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-5UTR	ENST00000268679	ENST00000378345		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-intron	ENST00000268679	ENST00000537116		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000448839	ENST00000317447		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000448839	ENST00000406948		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-5UTR	ENST00000448839	ENST00000378345		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-intron	ENST00000448839	ENST00000537116		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000360302	ENST00000317447		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000360302	ENST00000406948		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-5UTR	ENST00000360302	ENST00000378345		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-intron	ENST00000360302	ENST00000537116		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000436887	ENST00000317447		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-3CDS	ENST00000436887	ENST00000406948		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-5UTR	ENST00000436887	ENST00000378345		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
intron-intron	ENST00000436887	ENST00000537116		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	CBFA2T3	chr16	89007428	-	ACSF3	chr16	89169012	+
In-frame	ENST00000361246	ENST00000553525		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
In-frame	ENST00000361246	ENST00000555571		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
In-frame	ENST00000361246	ENST00000553530		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
Frame-shit	ENST00000361246	ENST00000556437		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000355512		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000406236		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000404301		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000407322		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000402788		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000343854		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000434263		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000554782		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-intron	ENST00000361246	ENST00000553690		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	CDC42BPB	chr14	103449893	-	RGS6	chr14	73029125	+
5CDS-5UTR	ENST00000266970	ENST00000232165		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
5CDS-intron	ENST00000266970	ENST00000438097		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
5CDS-5UTR	ENST00000266970	ENST00000566215		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
5CDS-intron	ENST00000266970	ENST00000428984		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
5CDS-intron	ENST00000266970	ENST00000397954		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000553376	ENST00000232165		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000553376	ENST00000438097		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000553376	ENST00000566215		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000553376	ENST00000428984		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000553376	ENST00000397954		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000440311	ENST00000232165		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000440311	ENST00000438097		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000440311	ENST00000566215		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000440311	ENST00000428984		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000440311	ENST00000397954		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000354056	ENST00000232165		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000354056	ENST00000438097		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000354056	ENST00000566215		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000354056	ENST00000428984		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000354056	ENST00000397954		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000556656	ENST00000232165		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000556656	ENST00000438097		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-5UTR	ENST00000556656	ENST00000566215		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000556656	ENST00000428984		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
intron-intron	ENST00000556656	ENST00000397954		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	CDK2	chr12	56366568	+	UBE3A	chr15	25657118	-
Frame-shit	ENST00000265689	ENST00000356341		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000265689	ENST00000530617		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000265689	ENST00000278568		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000265689	ENST00000528203		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
5CDS-intron	ENST00000265689	ENST00000525542		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
intron-3CDS	ENST00000533728	ENST00000356341		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
intron-3CDS	ENST00000533728	ENST00000530617		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
intron-3CDS	ENST00000533728	ENST00000278568		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
intron-3CDS	ENST00000533728	ENST00000528203		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
intron-intron	ENST00000533728	ENST00000525542		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000356135	ENST00000356341		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000356135	ENST00000530617		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000356135	ENST00000278568		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
Frame-shit	ENST00000356135	ENST00000528203		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
5CDS-intron	ENST00000356135	ENST00000525542		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	CHKA	chr11	67864486	-	PAK1	chr11	77085410	-
3UTR-3CDS	ENST00000435070	ENST00000229179		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000435070	ENST00000378905		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000435070	ENST00000539906		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3UTR	ENST00000435070	ENST00000401003		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000456847	ENST00000229179		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000456847	ENST00000378905		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000456847	ENST00000539906		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3UTR	ENST00000456847	ENST00000401003		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000266679	ENST00000229179		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000266679	ENST00000378905		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3CDS	ENST00000266679	ENST00000539906		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
3UTR-3UTR	ENST00000266679	ENST00000401003		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
intron-3CDS	ENST00000550987	ENST00000229179		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
intron-3CDS	ENST00000550987	ENST00000378905		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
intron-3CDS	ENST00000550987	ENST00000539906		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
intron-3UTR	ENST00000550987	ENST00000401003		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
Frame-shit	ENST00000551516	ENST00000229179		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
Frame-shit	ENST00000551516	ENST00000378905		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
Frame-shit	ENST00000551516	ENST00000539906		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
5CDS-3UTR	ENST00000551516	ENST00000401003		TCGA	RV	SKCM	TCGA-ER-A19G-06A	CPSF6	chr12	69656342	+	NUP107	chr12	69126417	+
Frame-shit	ENST00000412460	ENST00000519846		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
Frame-shit	ENST00000412460	ENST00000518592		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
Frame-shit	ENST00000412460	ENST00000325897		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
5CDS-3UTR	ENST00000412460	ENST00000518858		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
Frame-shit	ENST00000262210	ENST00000519846		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
Frame-shit	ENST00000262210	ENST00000518592		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
Frame-shit	ENST00000262210	ENST00000325897		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
5CDS-3UTR	ENST00000262210	ENST00000518858		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
3UTR-3CDS	ENST00000521168	ENST00000519846		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
3UTR-3CDS	ENST00000521168	ENST00000518592		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
3UTR-3CDS	ENST00000521168	ENST00000325897		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
3UTR-3UTR	ENST00000521168	ENST00000518858		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	CSPP1	chr8	68092161	+	CLVS1	chr8	62412014	+
5UTR-3CDS	ENST00000370918	ENST00000274901		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000370918	ENST00000398661		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370918	ENST00000370850		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370918	ENST00000508459		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370918	ENST00000308161		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370918	ENST00000428842		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370918	ENST00000358072		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370918	ENST00000507223		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000304434	ENST00000274901		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000304434	ENST00000398661		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000304434	ENST00000370850		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000304434	ENST00000508459		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000304434	ENST00000308161		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000304434	ENST00000428842		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000304434	ENST00000358072		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000304434	ENST00000507223		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-3CDS	ENST00000542638	ENST00000274901		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-3CDS	ENST00000542638	ENST00000398661		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-intron	ENST00000542638	ENST00000370850		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-intron	ENST00000542638	ENST00000508459		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-intron	ENST00000542638	ENST00000308161		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-intron	ENST00000542638	ENST00000428842		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-intron	ENST00000542638	ENST00000358072		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
intron-intron	ENST00000542638	ENST00000507223		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000541407	ENST00000274901		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000541407	ENST00000398661		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000541407	ENST00000370850		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000541407	ENST00000508459		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000541407	ENST00000308161		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000541407	ENST00000428842		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000541407	ENST00000358072		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000541407	ENST00000507223		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000486973	ENST00000274901		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000486973	ENST00000398661		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000486973	ENST00000370850		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000486973	ENST00000508459		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000486973	ENST00000308161		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000486973	ENST00000428842		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000486973	ENST00000358072		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000486973	ENST00000507223		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000370913	ENST00000274901		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-3CDS	ENST00000370913	ENST00000398661		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370913	ENST00000370850		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370913	ENST00000508459		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370913	ENST00000308161		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370913	ENST00000428842		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370913	ENST00000358072		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
5UTR-intron	ENST00000370913	ENST00000507223		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55378994	-
Frame-shit	ENST00000351797	ENST00000508053		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000351797	ENST00000262464		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000351797	ENST00000507835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000351797	ENST00000508989		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000351797	ENST00000511489		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000522858	ENST00000508053		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000522858	ENST00000262464		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000522858	ENST00000507835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000522858	ENST00000508989		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000522858	ENST00000511489		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000520667	ENST00000508053		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000520667	ENST00000262464		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000520667	ENST00000507835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000520667	ENST00000508989		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000520667	ENST00000511489		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
intron-3CDS	ENST00000518946	ENST00000508053		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
intron-3CDS	ENST00000518946	ENST00000262464		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
intron-intron	ENST00000518946	ENST00000507835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
intron-intron	ENST00000518946	ENST00000508989		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
intron-intron	ENST00000518946	ENST00000511489		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000520313	ENST00000508053		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
Frame-shit	ENST00000520313	ENST00000262464		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000520313	ENST00000507835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000520313	ENST00000508989		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5CDS-intron	ENST00000520313	ENST00000511489		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FAM114A2	chr5	153413351	-	FBN2	chr5	127609660	-
5UTR-3CDS	ENST00000340253	ENST00000230640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-intron	ENST00000340253	ENST00000545714		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-3UTR	ENST00000340253	ENST00000504388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-3CDS	ENST00000296701	ENST00000230640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-intron	ENST00000296701	ENST00000545714		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-3UTR	ENST00000296701	ENST00000504388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-3CDS	ENST00000394370	ENST00000230640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-intron	ENST00000394370	ENST00000545714		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5UTR-3UTR	ENST00000394370	ENST00000504388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
intron-3CDS	ENST00000509699	ENST00000230640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
intron-intron	ENST00000509699	ENST00000545714		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
intron-3UTR	ENST00000509699	ENST00000504388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
intron-3CDS	ENST00000513826	ENST00000230640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
intron-intron	ENST00000513826	ENST00000545714		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
intron-3UTR	ENST00000513826	ENST00000504388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	FBXO38	chr5	147763602	+	SKIV2L2	chr5	54618155	+
5CDS-3UTR	ENST00000534526	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000534526	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000534526	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000534526	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000534526	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000531134	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000531134	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000531134	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000531134	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000531134	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000427716	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000427716	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000427716	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000427716	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000427716	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5UTR-3UTR	ENST00000266482	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5UTR-3UTR	ENST00000266482	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5UTR-intron	ENST00000266482	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5UTR-intron	ENST00000266482	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5UTR-intron	ENST00000266482	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-3UTR	ENST00000546442	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-3UTR	ENST00000546442	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-intron	ENST00000546442	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-intron	ENST00000546442	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-intron	ENST00000546442	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000525053	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000525053	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000525053	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000525053	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000525053	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-3UTR	ENST00000381025	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-3UTR	ENST00000381025	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-intron	ENST00000381025	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-intron	ENST00000381025	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
intron-intron	ENST00000381025	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000472289	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-3UTR	ENST00000472289	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000472289	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000472289	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5CDS-intron	ENST00000472289	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
3UTR-3UTR	ENST00000473513	ENST00000548411		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
3UTR-3UTR	ENST00000473513	ENST00000281474		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
3UTR-intron	ENST00000473513	ENST00000551848		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
3UTR-intron	ENST00000473513	ENST00000550207		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
3UTR-intron	ENST00000473513	ENST00000551086		TCGA	RV	SKCM	TCGA-EE-A20I-06A	FGD4	chr12	32729383	+	BICD1	chr12	32530474	+
5UTR-3CDS	ENST00000229395	ENST00000381501		TCGA	RV	SKCM	TCGA-EE-A2MM-06A	FGFR1OP2	chr12	27091643	+	TEC	chr4	48158751	-
5UTR-intron	ENST00000229395	ENST00000511471		TCGA	RV	SKCM	TCGA-EE-A2MM-06A	FGFR1OP2	chr12	27091643	+	TEC	chr4	48158751	-
5UTR-3CDS	ENST00000546072	ENST00000381501		TCGA	RV	SKCM	TCGA-EE-A2MM-06A	FGFR1OP2	chr12	27091643	+	TEC	chr4	48158751	-
5UTR-intron	ENST00000546072	ENST00000511471		TCGA	RV	SKCM	TCGA-EE-A2MM-06A	FGFR1OP2	chr12	27091643	+	TEC	chr4	48158751	-
5UTR-3CDS	ENST00000327214	ENST00000381501		TCGA	RV	SKCM	TCGA-EE-A2MM-06A	FGFR1OP2	chr12	27091643	+	TEC	chr4	48158751	-
5UTR-intron	ENST00000327214	ENST00000511471		TCGA	RV	SKCM	TCGA-EE-A2MM-06A	FGFR1OP2	chr12	27091643	+	TEC	chr4	48158751	-
intron-3CDS	ENST00000441478	ENST00000361131		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	FIG4	chr6	110037771	+	PPP1R14C	chr6	150535880	+
Frame-shit	ENST00000230124	ENST00000361131		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	FIG4	chr6	110037771	+	PPP1R14C	chr6	150535880	+
Frame-shit	ENST00000368941	ENST00000361131		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	FIG4	chr6	110037771	+	PPP1R14C	chr6	150535880	+
Frame-shit	ENST00000335154	ENST00000331366		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000335154	ENST00000538596		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000335154	ENST00000546603		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000335154	ENST00000360449		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000550488	ENST00000331366		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000550488	ENST00000538596		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000550488	ENST00000546603		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000550488	ENST00000360449		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000352151	ENST00000331366		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000352151	ENST00000538596		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000352151	ENST00000546603		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000352151	ENST00000360449		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000293590	ENST00000331366		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000293590	ENST00000538596		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000293590	ENST00000546603		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
5CDS-5UTR	ENST00000293590	ENST00000360449		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
intron-3CDS	ENST00000550668	ENST00000331366		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
intron-3CDS	ENST00000550668	ENST00000538596		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
intron-5UTR	ENST00000550668	ENST00000546603		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
intron-5UTR	ENST00000550668	ENST00000360449		TCGA	RV	SKCM	TCGA-GN-A264-06A	FMNL3	chr12	50100838	-	CPNE8	chr12	39071356	-
Frame-shit	ENST00000398540	ENST00000392676		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
Frame-shit	ENST00000398540	ENST00000392677		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
Frame-shit	ENST00000398540	ENST00000588877		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
5CDS-intron	ENST00000398540	ENST00000589609		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
In-frame	ENST00000542259	ENST00000392676		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
In-frame	ENST00000542259	ENST00000392677		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
In-frame	ENST00000542259	ENST00000588877		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
5CDS-intron	ENST00000542259	ENST00000589609		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-3CDS	ENST00000497757	ENST00000392676		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-3CDS	ENST00000497757	ENST00000392677		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-3CDS	ENST00000497757	ENST00000588877		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-intron	ENST00000497757	ENST00000589609		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-3CDS	ENST00000478263	ENST00000392676		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-3CDS	ENST00000478263	ENST00000392677		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-3CDS	ENST00000478263	ENST00000588877		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
intron-intron	ENST00000478263	ENST00000589609		TCGA	RV	SKCM	TCGA-WE-A8ZR-06A	FRMD4B	chr3	69336903	-	ABCA5	chr17	67252424	-
5UTR-3CDS	ENST00000380877	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000380877	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000380877	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-3CDS	ENST00000220429	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000220429	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000220429	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-3CDS	ENST00000543881	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000543881	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000543881	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-3CDS	ENST00000429662	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000429662	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000429662	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-3CDS	ENST00000396464	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000396464	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000396464	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-3CDS	ENST00000359031	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000359031	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000359031	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-3CDS	ENST00000560825	ENST00000559313		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000560825	ENST00000557973		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
5UTR-intron	ENST00000560825	ENST00000397536		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	GABPB1	chr15	50647182	-	C15orf52	chr15	40630094	-
intron-3CDS	ENST00000543760	ENST00000331110		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000543760	ENST00000348120		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000543760	ENST00000366563		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000543760	ENST00000366564		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000543760	ENST00000366565		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000543760	ENST00000446183		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000543760	ENST00000366562		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000543760	ENST00000401882		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000543760	ENST00000407727		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
Frame-shit	ENST00000366672	ENST00000331110		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
Frame-shit	ENST00000366672	ENST00000348120		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
Frame-shit	ENST00000366672	ENST00000366563		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
Frame-shit	ENST00000366672	ENST00000366564		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
Frame-shit	ENST00000366672	ENST00000366565		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5CDS-5UTR	ENST00000366672	ENST00000446183		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5CDS-5UTR	ENST00000366672	ENST00000366562		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5CDS-5UTR	ENST00000366672	ENST00000401882		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5CDS-5UTR	ENST00000366672	ENST00000407727		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-3CDS	ENST00000541865	ENST00000331110		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-3CDS	ENST00000541865	ENST00000348120		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-3CDS	ENST00000541865	ENST00000366563		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-3CDS	ENST00000541865	ENST00000366564		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-3CDS	ENST00000541865	ENST00000366565		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-5UTR	ENST00000541865	ENST00000446183		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-5UTR	ENST00000541865	ENST00000366562		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-5UTR	ENST00000541865	ENST00000401882		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-5UTR	ENST00000541865	ENST00000407727		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000485438	ENST00000331110		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000485438	ENST00000348120		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000485438	ENST00000366563		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000485438	ENST00000366564		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-3CDS	ENST00000485438	ENST00000366565		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000485438	ENST00000446183		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000485438	ENST00000366562		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000485438	ENST00000401882		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
intron-5UTR	ENST00000485438	ENST00000407727		TCGA	RV	SKCM	TCGA-D3-A51E-06A	GALNT2	chr1	230203153	+	RGS7	chr1	241146429	-
5UTR-5UTR	ENST00000382159	ENST00000400520		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GNG7	chr19	2646222	-	PLA2G2A	chr1	20305372	-
5UTR-5UTR	ENST00000382159	ENST00000496748		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GNG7	chr19	2646222	-	PLA2G2A	chr1	20305372	-
5UTR-5UTR	ENST00000382159	ENST00000375111		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GNG7	chr19	2646222	-	PLA2G2A	chr1	20305372	-
5UTR-3CDS	ENST00000476510	ENST00000394253		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
5UTR-3CDS	ENST00000476510	ENST00000373010		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
5UTR-3CDS	ENST00000476510	ENST00000373006		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
5UTR-3CDS	ENST00000476510	ENST00000297229		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
5UTR-3CDS	ENST00000476510	ENST00000373009		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
Frame-shit	ENST00000307126	ENST00000394253		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
Frame-shit	ENST00000307126	ENST00000373010		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
Frame-shit	ENST00000307126	ENST00000373006		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
Frame-shit	ENST00000307126	ENST00000297229		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
Frame-shit	ENST00000307126	ENST00000373009		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
In-frame	ENST00000307114	ENST00000394253		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
In-frame	ENST00000307114	ENST00000373010		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
In-frame	ENST00000307114	ENST00000373006		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
In-frame	ENST00000307114	ENST00000297229		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
In-frame	ENST00000307114	ENST00000373009		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	GTPBP2	chr6	43593493	-	USP49	chr6	41766667	-
Frame-shit	ENST00000379719	ENST00000528080		TCGA	RV	SKCM	TCGA-DA-A95X-06A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
Frame-shit	ENST00000379719	ENST00000527813		TCGA	RV	SKCM	TCGA-DA-A95X-06A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
Frame-shit	ENST00000379719	ENST00000533723		TCGA	RV	SKCM	TCGA-DA-A95X-06A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-3CDS	ENST00000533680	ENST00000528080		TCGA	RV	SKCM	TCGA-DA-A95X-06A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-3CDS	ENST00000533680	ENST00000527813		TCGA	RV	SKCM	TCGA-DA-A95X-06A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
intron-3CDS	ENST00000533680	ENST00000533723		TCGA	RV	SKCM	TCGA-DA-A95X-06A	IPO7	chr11	9406394	+	TMEM41B	chr11	9321248	-
5CDS-3UTR	ENST00000288135	ENST00000509763		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KIT	chr4	55524248	+	UGT2B7	chr4	69955190	+
5CDS-intron	ENST00000288135	ENST00000305231		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KIT	chr4	55524248	+	UGT2B7	chr4	69955190	+
5CDS-intron	ENST00000288135	ENST00000508661		TCGA	RV	SKCM	TCGA-EB-A44O-01A	KIT	chr4	55524248	+	UGT2B7	chr4	69955190	+
Frame-shit	ENST00000539563	ENST00000328300		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
Frame-shit	ENST00000539563	ENST00000361603		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
5CDS-intron	ENST00000539563	ENST00000477429		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
Frame-shit	ENST00000490035	ENST00000328300		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
Frame-shit	ENST00000490035	ENST00000361603		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
5CDS-intron	ENST00000490035	ENST00000477429		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
5UTR-3CDS	ENST00000498645	ENST00000328300		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
5UTR-3CDS	ENST00000498645	ENST00000361603		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
5UTR-intron	ENST00000498645	ENST00000477429		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	LSAMP	chr3	115738362	-	COL4A5	chrX	107811989	+
In-frame	ENST00000524717	ENST00000526343		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
In-frame	ENST00000524717	ENST00000282441		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
In-frame	ENST00000524717	ENST00000537274		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
In-frame	ENST00000524717	ENST00000345877		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
In-frame	ENST00000524717	ENST00000531439		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
In-frame	ENST00000524717	ENST00000524575		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
5CDS-intron	ENST00000524717	ENST00000528834		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MAML2	chr11	96074547	-	YAP1	chr11	102094353	+
5CDS-5UTR	ENST00000425759	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000425759	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-5UTR	ENST00000292733	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000292733	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-5UTR	ENST00000542773	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000542773	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-5UTR	ENST00000263205	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000263205	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-5UTR	ENST00000406969	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000406969	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-5UTR	ENST00000382974	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000382974	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-5UTR	ENST00000541476	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
5CDS-intron	ENST00000541476	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-5UTR	ENST00000478831	ENST00000399782		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000317582		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000543133		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000538149		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000337612		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000493680		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000355028		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000418951		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
3UTR-intron	ENST00000478831	ENST00000485631		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	MED15	chr22	20922918	+	BCL2L13	chr22	18120868	+
In-frame	ENST00000312865	ENST00000377602		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	MED25	chr19	50322553	+	ST8SIA6	chr10	17432619	-
intron-3CDS	ENST00000538643	ENST00000377602		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	MED25	chr19	50322553	+	ST8SIA6	chr10	17432619	-
5UTR-5UTR	ENST00000355630	ENST00000359867		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000355630	ENST00000396832		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000355630	ENST00000400206		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000355630	ENST00000403904		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000355630	ENST00000413574		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000355630	ENST00000405675		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-intron	ENST00000355630	ENST00000498529		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000396617	ENST00000359867		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000396617	ENST00000396832		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000396617	ENST00000400206		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000396617	ENST00000403904		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000396617	ENST00000413574		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000396617	ENST00000405675		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-intron	ENST00000396617	ENST00000498529		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000402042	ENST00000359867		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000402042	ENST00000396832		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000402042	ENST00000400206		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000402042	ENST00000403904		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000402042	ENST00000413574		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000402042	ENST00000405675		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-intron	ENST00000402042	ENST00000498529		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000466278	ENST00000359867		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000466278	ENST00000396832		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000466278	ENST00000400206		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000466278	ENST00000403904		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000466278	ENST00000413574		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-5UTR	ENST00000466278	ENST00000405675		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5UTR-intron	ENST00000466278	ENST00000498529		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000359867		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000396832		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000400206		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000403904		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000413574		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000405675		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000407029	ENST00000498529		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000359867		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000396832		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000400206		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000403904		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000413574		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000405675		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000402630	ENST00000498529		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40948110	-	CSNK1E	chr22	38710174	-
5CDS-3UTR	ENST00000406961	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000406961	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000406961	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000406961	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000469850	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000469850	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000469850	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
intron-3UTR	ENST00000469850	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000405141	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000405141	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000405141	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000405141	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000407230	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000407230	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000407230	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000407230	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000538539	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000538539	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000538539	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000538539	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000288599	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000288599	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000288599	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000288599	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000348332	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000348332	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000348332	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000348332	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000395856	ENST00000446425		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000395856	ENST00000404924		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000395856	ENST00000309033		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
5CDS-3UTR	ENST00000395856	ENST00000535786		TCGA	RV	SKCM	TCGA-D3-A1Q6-06A	NCOA1	chr2	24920667	+	UBXN2A	chr2	24222542	+
intron-3CDS	ENST00000337959	ENST00000254730		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000337959	ENST00000483457		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-intron	ENST00000337959	ENST00000483569		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000263246	ENST00000254730		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000263246	ENST00000483457		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-intron	ENST00000263246	ENST00000483569		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000407585	ENST00000254730		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000407585	ENST00000483457		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-intron	ENST00000407585	ENST00000483569		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
5UTR-3CDS	ENST00000403744	ENST00000254730		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
5UTR-3CDS	ENST00000403744	ENST00000483457		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
5UTR-intron	ENST00000403744	ENST00000483569		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000402229	ENST00000254730		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-3CDS	ENST00000402229	ENST00000483457		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
intron-intron	ENST00000402229	ENST00000483569		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	PACSIN2	chr22	43342903	-	EEFSEC	chr3	128126912	+
In-frame	ENST00000360540	ENST00000260126		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
In-frame	ENST00000360540	ENST00000524945		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
In-frame	ENST00000360540	ENST00000530307		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
5CDS-5UTR	ENST00000360540	ENST00000528658		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-3CDS	ENST00000544451	ENST00000260126		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-3CDS	ENST00000544451	ENST00000524945		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-3CDS	ENST00000544451	ENST00000530307		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-5UTR	ENST00000544451	ENST00000528658		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
5UTR-3CDS	ENST00000519559	ENST00000260126		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
5UTR-3CDS	ENST00000519559	ENST00000524945		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
5UTR-3CDS	ENST00000519559	ENST00000530307		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
5UTR-5UTR	ENST00000519559	ENST00000528658		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
Frame-shit	ENST00000522514	ENST00000260126		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
Frame-shit	ENST00000522514	ENST00000524945		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
Frame-shit	ENST00000522514	ENST00000530307		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
5CDS-5UTR	ENST00000522514	ENST00000528658		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-3CDS	ENST00000521344	ENST00000260126		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-3CDS	ENST00000521344	ENST00000524945		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-3CDS	ENST00000521344	ENST00000530307		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
intron-5UTR	ENST00000521344	ENST00000528658		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	PCMTD1	chr8	52758221	-	SLCO5A1	chr8	70674110	-
In-frame	ENST00000379162	ENST00000536525		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000379162	ENST00000397909		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000379162	ENST00000228327		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000379162	ENST00000266692		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
5CDS-3UTR	ENST00000379162	ENST00000552300		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
5CDS-intron	ENST00000379162	ENST00000541270		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000441463	ENST00000536525		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000441463	ENST00000397909		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000441463	ENST00000228327		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
In-frame	ENST00000441463	ENST00000266692		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
5CDS-3UTR	ENST00000441463	ENST00000552300		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
5CDS-intron	ENST00000441463	ENST00000541270		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
intron-3CDS	ENST00000493226	ENST00000536525		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
intron-3CDS	ENST00000493226	ENST00000397909		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
intron-3CDS	ENST00000493226	ENST00000228327		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
intron-3CDS	ENST00000493226	ENST00000266692		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
intron-3UTR	ENST00000493226	ENST00000552300		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
intron-intron	ENST00000493226	ENST00000541270		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	PDK3	chrX	24523415	+	NAV3	chr12	78579381	+
Frame-shit	ENST00000610273	ENST00000369261		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000610273	ENST00000536676		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000610273	ENST00000544166		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000610273	ENST00000539200		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
Frame-shit	ENST00000392167	ENST00000369261		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000392167	ENST00000536676		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000392167	ENST00000544166		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-intron	ENST00000392167	ENST00000539200		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
3UTR-3CDS	ENST00000609334	ENST00000369261		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
3UTR-intron	ENST00000609334	ENST00000536676		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
3UTR-5UTR	ENST00000609334	ENST00000544166		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
3UTR-intron	ENST00000609334	ENST00000539200		TCGA	RV	SKCM	TCGA-FS-A1Z0-06A	PNLDC1	chr6	160225669	+	KLHL32	chr6	97489368	+
5CDS-5UTR	ENST00000253925	ENST00000333090		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	PPFIA1	chr11	70202360	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000253925	ENST00000527881		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	PPFIA1	chr11	70202360	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000389547	ENST00000333090		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	PPFIA1	chr11	70202360	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000389547	ENST00000527881		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	PPFIA1	chr11	70202360	+	TSKU	chr11	76506653	+
intron-5UTR	ENST00000530548	ENST00000333090		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	PPFIA1	chr11	70202360	+	TSKU	chr11	76506653	+
intron-5UTR	ENST00000530548	ENST00000527881		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	PPFIA1	chr11	70202360	+	TSKU	chr11	76506653	+
5CDS-5UTR	ENST00000256190	ENST00000396275		TCGA	RV	SKCM	TCGA-GN-A268-06A	SBF2	chr11	10315562	-	MRGPRX3	chr11	18154161	+
intron-5UTR	ENST00000527019	ENST00000396275		TCGA	RV	SKCM	TCGA-GN-A268-06A	SBF2	chr11	10315562	-	MRGPRX3	chr11	18154161	+
Frame-shit	ENST00000280871	ENST00000543096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	SLC2A13	chr12	40499055	-	FAM186A	chr12	50727886	-
Frame-shit	ENST00000280871	ENST00000543111		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	SLC2A13	chr12	40499055	-	FAM186A	chr12	50727886	-
Frame-shit	ENST00000280871	ENST00000327337		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	SLC2A13	chr12	40499055	-	FAM186A	chr12	50727886	-
Frame-shit	ENST00000380858	ENST00000543096		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	SLC2A13	chr12	40499055	-	FAM186A	chr12	50727886	-
Frame-shit	ENST00000380858	ENST00000543111		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	SLC2A13	chr12	40499055	-	FAM186A	chr12	50727886	-
Frame-shit	ENST00000380858	ENST00000327337		TCGA	RV	SKCM	TCGA-WE-A8ZX-06A	SLC2A13	chr12	40499055	-	FAM186A	chr12	50727886	-
3UTR-3CDS	ENST00000491455	ENST00000366997		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
3UTR-3CDS	ENST00000491455	ENST00000366996		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
3UTR-intron	ENST00000491455	ENST00000488600		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
In-frame	ENST00000415093	ENST00000366997		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
In-frame	ENST00000415093	ENST00000366996		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
5CDS-intron	ENST00000415093	ENST00000488600		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
In-frame	ENST00000366957	ENST00000366997		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
In-frame	ENST00000366957	ENST00000366996		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
5CDS-intron	ENST00000366957	ENST00000488600		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	SMYD2	chr1	214498051	+	LPGAT1	chr1	211924409	-
5CDS-5UTR	ENST00000337137	ENST00000257749		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000337137	ENST00000537989		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000337137	ENST00000343122		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-intron	ENST00000337137	ENST00000470301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5UTR-5UTR	ENST00000380995	ENST00000257749		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5UTR-5UTR	ENST00000380995	ENST00000537989		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5UTR-5UTR	ENST00000380995	ENST00000343122		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5UTR-intron	ENST00000380995	ENST00000470301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000407381	ENST00000257749		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000407381	ENST00000537989		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000407381	ENST00000343122		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-intron	ENST00000407381	ENST00000470301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000355704	ENST00000257749		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000355704	ENST00000537989		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-5UTR	ENST00000355704	ENST00000343122		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
5CDS-intron	ENST00000355704	ENST00000470301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-5UTR	ENST00000472791	ENST00000257749		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-5UTR	ENST00000472791	ENST00000537989		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-5UTR	ENST00000472791	ENST00000343122		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-intron	ENST00000472791	ENST00000470301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-5UTR	ENST00000406733	ENST00000257749		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-5UTR	ENST00000406733	ENST00000537989		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-5UTR	ENST00000406733	ENST00000343122		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-intron	ENST00000406733	ENST00000470301		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TBC1D22A	chr22	47158745	+	BACH2	chr6	90718575	-
intron-3CDS	ENST00000258991	ENST00000468888		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000258991	ENST00000399362		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000258991	ENST00000539981		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000258991	ENST00000359576		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000258991	ENST00000307312		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000258991	ENST00000480013		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000258991	ENST00000461133		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000258991	ENST00000313350		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000258991	ENST00000487200		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000258991	ENST00000333778		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000258991	ENST00000482896		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000468888		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000399362		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000539981		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000359576		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000307312		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000480013		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000583097	ENST00000461133		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000583097	ENST00000313350		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000583097	ENST00000487200		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000583097	ENST00000333778		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000583097	ENST00000482896		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000468888		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000399362		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000539981		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000359576		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000307312		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000480013		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000584379	ENST00000461133		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000584379	ENST00000313350		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000584379	ENST00000487200		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000584379	ENST00000333778		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000584379	ENST00000482896		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000468888		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000399362		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000539981		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000359576		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000307312		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000480013		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000581812	ENST00000461133		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000581812	ENST00000313350		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000581812	ENST00000487200		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000581812	ENST00000333778		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
intron-intron	ENST00000581812	ENST00000482896		TCGA	RV	SKCM	TCGA-D3-A1QA-06A	TEX2	chr17	62224796	-	CLASP2	chr3	33602368	-
In-frame	ENST00000212355	ENST00000354831		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
In-frame	ENST00000212355	ENST00000352171		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-intron	ENST00000212355	ENST00000485608		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000212355	ENST00000539524		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000212355	ENST00000544028		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
In-frame	ENST00000370399	ENST00000354831		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
In-frame	ENST00000370399	ENST00000352171		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-intron	ENST00000370399	ENST00000485608		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000370399	ENST00000539524		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000370399	ENST00000544028		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
Frame-shit	ENST00000525962	ENST00000354831		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
Frame-shit	ENST00000525962	ENST00000352171		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-intron	ENST00000525962	ENST00000485608		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000525962	ENST00000539524		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
5CDS-5UTR	ENST00000525962	ENST00000544028		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
intron-3CDS	ENST00000468996	ENST00000354831		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
intron-3CDS	ENST00000468996	ENST00000352171		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
intron-intron	ENST00000468996	ENST00000485608		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
intron-5UTR	ENST00000468996	ENST00000539524		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
intron-5UTR	ENST00000468996	ENST00000544028		TCGA	RV	SKCM	TCGA-EB-A82C-01A	TGFBR3	chr1	92327028	-	NRD1	chr1	52306186	-
Frame-shit	ENST00000258796	ENST00000402746		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000258796	ENST00000399654		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000258796	ENST00000406869		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000258796	ENST00000265854		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
5CDS-intron	ENST00000258796	ENST00000486340		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000402746		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000399654		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000406869		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
Frame-shit	ENST00000407643	ENST00000265854		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
5CDS-intron	ENST00000407643	ENST00000486340		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000402746		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000399654		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000406869		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000403167	ENST00000265854		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-intron	ENST00000403167	ENST00000486340		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000402746		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000399654		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000406869		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-3CDS	ENST00000477439	ENST00000265854		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
intron-intron	ENST00000477439	ENST00000486340		TCGA	RV	SKCM	TCGA-3N-A9WD-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1938026	-
5CDS-3UTR	ENST00000403766	ENST00000379061		TCGA	RV	SKCM	TCGA-FS-A1ZM-06A	UBAC2	chr13	99853193	+	SARM1	chr17	26711376	+
5CDS-3UTR	ENST00000403766	ENST00000457710		TCGA	RV	SKCM	TCGA-FS-A1ZM-06A	UBAC2	chr13	99853193	+	SARM1	chr17	26711376	+
5UTR-3UTR	ENST00000376440	ENST00000379061		TCGA	RV	SKCM	TCGA-FS-A1ZM-06A	UBAC2	chr13	99853193	+	SARM1	chr17	26711376	+
5UTR-3UTR	ENST00000376440	ENST00000457710		TCGA	RV	SKCM	TCGA-FS-A1ZM-06A	UBAC2	chr13	99853193	+	SARM1	chr17	26711376	+
intron-3UTR	ENST00000460562	ENST00000379061		TCGA	RV	SKCM	TCGA-FS-A1ZM-06A	UBAC2	chr13	99853193	+	SARM1	chr17	26711376	+
intron-3UTR	ENST00000460562	ENST00000457710		TCGA	RV	SKCM	TCGA-FS-A1ZM-06A	UBAC2	chr13	99853193	+	SARM1	chr17	26711376	+
3UTR-3CDS	ENST00000459775	ENST00000165698		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
3UTR-intron	ENST00000459775	ENST00000535845		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
3UTR-intron	ENST00000459775	ENST00000541910		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
3UTR-intron	ENST00000459775	ENST00000538924		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
3UTR-5UTR	ENST00000459775	ENST00000540790		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
3UTR-5UTR	ENST00000459775	ENST00000473407		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
In-frame	ENST00000450066	ENST00000165698		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000450066	ENST00000535845		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000450066	ENST00000541910		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000450066	ENST00000538924		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000450066	ENST00000540790		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000450066	ENST00000473407		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
In-frame	ENST00000409025	ENST00000165698		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409025	ENST00000535845		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409025	ENST00000541910		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409025	ENST00000538924		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409025	ENST00000540790		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409025	ENST00000473407		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
In-frame	ENST00000409470	ENST00000165698		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409470	ENST00000535845		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409470	ENST00000541910		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409470	ENST00000538924		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409470	ENST00000540790		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409470	ENST00000473407		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
In-frame	ENST00000323701	ENST00000165698		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000323701	ENST00000535845		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000323701	ENST00000541910		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000323701	ENST00000538924		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000323701	ENST00000540790		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000323701	ENST00000473407		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
In-frame	ENST00000409766	ENST00000165698		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409766	ENST00000535845		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409766	ENST00000541910		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-intron	ENST00000409766	ENST00000538924		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409766	ENST00000540790		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
5CDS-5UTR	ENST00000409766	ENST00000473407		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	USP39	chr2	85846412	+	REEP1	chr2	86509365	-
Frame-shit	ENST00000261381	ENST00000331351		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	XYLT1	chr16	17292069	-	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000261381	ENST00000475436		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	XYLT1	chr16	17292069	-	HS3ST4	chr16	26146933	+
intron-3CDS	ENST00000568226	ENST00000331351		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	XYLT1	chr16	17292069	-	HS3ST4	chr16	26146933	+
intron-3UTR	ENST00000568226	ENST00000475436		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	XYLT1	chr16	17292069	-	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000352645	ENST00000215957		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ZC3H7B	chr22	41723368	+	MICALL1	chr22	38307959	+
5CDS-intron	ENST00000352645	ENST00000402631		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ZC3H7B	chr22	41723368	+	MICALL1	chr22	38307959	+
Frame-shit	ENST00000351589	ENST00000215957		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ZC3H7B	chr22	41723368	+	MICALL1	chr22	38307959	+
5CDS-intron	ENST00000351589	ENST00000402631		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ZC3H7B	chr22	41723368	+	MICALL1	chr22	38307959	+
3UTR-3CDS	ENST00000597975	ENST00000355481		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
3UTR-3CDS	ENST00000597975	ENST00000360985		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
3UTR-3CDS	ENST00000597975	ENST00000359596		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
5UTR-3CDS	ENST00000600344	ENST00000355481		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
5UTR-3CDS	ENST00000600344	ENST00000360985		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
5UTR-3CDS	ENST00000600344	ENST00000359596		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
5UTR-3CDS	ENST00000396161	ENST00000355481		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
5UTR-3CDS	ENST00000396161	ENST00000360985		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
5UTR-3CDS	ENST00000396161	ENST00000359596		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ZNF134	chr19	58125871	+	RYR1	chr19	39033987	+
Frame-shit	ENST00000412704	ENST00000263708		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-5UTR	ENST00000412704	ENST00000544261		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-intron	ENST00000412704	ENST00000460162		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
Frame-shit	ENST00000376887	ENST00000263708		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-5UTR	ENST00000376887	ENST00000544261		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-intron	ENST00000376887	ENST00000460162		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
Frame-shit	ENST00000536256	ENST00000263708		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-5UTR	ENST00000536256	ENST00000544261		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-intron	ENST00000536256	ENST00000460162		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
Frame-shit	ENST00000431522	ENST00000263708		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-5UTR	ENST00000431522	ENST00000544261		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-intron	ENST00000431522	ENST00000460162		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
Frame-shit	ENST00000538287	ENST00000263708		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-5UTR	ENST00000538287	ENST00000544261		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-intron	ENST00000538287	ENST00000460162		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
intron-3CDS	ENST00000474158	ENST00000263708		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
intron-5UTR	ENST00000474158	ENST00000544261		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
intron-intron	ENST00000474158	ENST00000460162		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120690000	+
5CDS-5UTR	ENST00000334444	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
5CDS-5UTR	ENST00000265586	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
intron-5UTR	ENST00000492216	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
intron-5UTR	ENST00000427120	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
intron-5UTR	ENST00000392579	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
intron-5UTR	ENST00000382494	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
intron-5UTR	ENST00000446941	ENST00000328051		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	ABCC5	chr3	183645118	-	SPRR4	chr1	152944347	+
5CDS-intron	ENST00000268070	ENST00000560302		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
5CDS-intron	ENST00000268070	ENST00000394518		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
5CDS-intron	ENST00000268070	ENST00000361243		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
5CDS-3UTR	ENST00000268070	ENST00000560579		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
5CDS-3UTR	ENST00000268070	ENST00000394510		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
intron-intron	ENST00000559976	ENST00000560302		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
intron-intron	ENST00000559976	ENST00000394518		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
intron-intron	ENST00000559976	ENST00000361243		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
intron-3UTR	ENST00000559976	ENST00000560579		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
intron-3UTR	ENST00000559976	ENST00000394510		TCGA	RV	SKCM	TCGA-GN-A26A-06A	ADAMTS17	chr15	100533253	-	AKAP13	chr15	86265222	+
In-frame	ENST00000388820	ENST00000340353		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
In-frame	ENST00000388820	ENST00000532959		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
In-frame	ENST00000388820	ENST00000305494		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
In-frame	ENST00000388820	ENST00000535167		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
5CDS-intron	ENST00000388820	ENST00000355734		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
5UTR-3CDS	ENST00000566303	ENST00000340353		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
5UTR-3CDS	ENST00000566303	ENST00000532959		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
5UTR-3CDS	ENST00000566303	ENST00000305494		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
5UTR-3CDS	ENST00000566303	ENST00000535167		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
5UTR-intron	ENST00000566303	ENST00000355734		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	ADAMTS7	chr15	79103463	-	TMEM135	chr11	86947680	+
In-frame	ENST00000371108	ENST00000369503		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
In-frame	ENST00000371108	ENST00000369502		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
5CDS-intron	ENST00000371108	ENST00000481127		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
In-frame	ENST00000263440	ENST00000369503		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
In-frame	ENST00000263440	ENST00000369502		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
5CDS-intron	ENST00000263440	ENST00000481127		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
intron-3CDS	ENST00000494765	ENST00000369503		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
intron-3CDS	ENST00000494765	ENST00000369502		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
intron-intron	ENST00000494765	ENST00000481127		TCGA	RV	SKCM	TCGA-EB-A44R-06A	ALG6	chr1	63836730	+	SLC22A15	chr1	116569514	+
intron-3CDS	ENST00000298834	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
intron-3CDS	ENST00000426438	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
intron-3CDS	ENST00000314845	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
5UTR-3CDS	ENST00000533727	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
5UTR-3CDS	ENST00000534300	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
intron-3CDS	ENST00000458649	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
5UTR-3CDS	ENST00000528950	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
intron-3CDS	ENST00000529963	ENST00000378623		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	AMBRA1	chr11	46615378	-	LRP4	chr11	46924480	-
In-frame	ENST00000350026	ENST00000367474		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SAMD5	chr6	147885530	+
In-frame	ENST00000346085	ENST00000367474		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SAMD5	chr6	147885530	+
In-frame	ENST00000367148	ENST00000367474		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SAMD5	chr6	147885530	+
In-frame	ENST00000275248	ENST00000367474		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SAMD5	chr6	147885530	+
intron-3CDS	ENST00000478761	ENST00000367474		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SAMD5	chr6	147885530	+
In-frame	ENST00000350026	ENST00000367469		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000350026	ENST00000367467		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000350026	ENST00000470750		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000346085	ENST00000367469		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000346085	ENST00000367467		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000346085	ENST00000470750		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000367148	ENST00000367469		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000367148	ENST00000367467		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000367148	ENST00000470750		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000275248	ENST00000367469		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
In-frame	ENST00000275248	ENST00000367467		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
5CDS-intron	ENST00000275248	ENST00000470750		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
intron-3CDS	ENST00000478761	ENST00000367469		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
intron-3CDS	ENST00000478761	ENST00000367467		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
intron-intron	ENST00000478761	ENST00000470750		TCGA	RV	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	SASH1	chr6	148711270	+
Frame-shit	ENST00000321990	ENST00000418988		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
Frame-shit	ENST00000321990	ENST00000555531		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
Frame-shit	ENST00000321990	ENST00000419365		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
5CDS-intron	ENST00000321990	ENST00000524606		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
5CDS-intron	ENST00000321990	ENST00000396394		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
5CDS-intron	ENST00000321990	ENST00000396393		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
5CDS-5UTR	ENST00000321990	ENST00000530457		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	ATAD5	chr17	29182345	+	PSMA1	chr11	14540587	-
5CDS-5UTR	ENST00000398590	ENST00000354883		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000398590	ENST00000336733		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000398590	ENST00000536651		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000398590	ENST00000413054		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000398590	ENST00000484768		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-5UTR	ENST00000295900	ENST00000354883		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000295900	ENST00000336733		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000295900	ENST00000536651		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000295900	ENST00000413054		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000295900	ENST00000484768		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-5UTR	ENST00000487717	ENST00000354883		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000487717	ENST00000336733		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000487717	ENST00000536651		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000487717	ENST00000413054		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000487717	ENST00000484768		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-5UTR	ENST00000538065	ENST00000354883		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000538065	ENST00000336733		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000538065	ENST00000536651		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000538065	ENST00000413054		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
5CDS-intron	ENST00000538065	ENST00000484768		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-5UTR	ENST00000484332	ENST00000354883		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000484332	ENST00000336733		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000484332	ENST00000536651		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000484332	ENST00000413054		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000484332	ENST00000484768		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-5UTR	ENST00000488239	ENST00000354883		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000488239	ENST00000336733		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000488239	ENST00000536651		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000488239	ENST00000413054		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
intron-intron	ENST00000488239	ENST00000484768		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66271168	+
Frame-shit	ENST00000158149	ENST00000397035		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
Frame-shit	ENST00000158149	ENST00000397041		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
Frame-shit	ENST00000158149	ENST00000309890		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000158149	ENST00000397039		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000158149	ENST00000359983		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000158149	ENST00000352011		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000158149	ENST00000397043		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
Frame-shit	ENST00000389005	ENST00000397035		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
In-frame	ENST00000389005	ENST00000397041		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
In-frame	ENST00000389005	ENST00000309890		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000389005	ENST00000397039		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000389005	ENST00000359983		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000389005	ENST00000352011		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-5UTR	ENST00000389005	ENST00000397043		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-3CDS	ENST00000577169	ENST00000397035		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-3CDS	ENST00000577169	ENST00000397041		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-3CDS	ENST00000577169	ENST00000309890		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000577169	ENST00000397039		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000577169	ENST00000359983		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000577169	ENST00000352011		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
intron-5UTR	ENST00000577169	ENST00000397043		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	C17orf85	chr17	3717616	-	ATP2A3	chr17	3857004	-
5CDS-intron	ENST00000298892	ENST00000413953		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000298892	ENST00000347140		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000298892	ENST00000358907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000298892	ENST00000402412		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000298892	ENST00000441731		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000298892	ENST00000403821		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000298892	ENST00000546843		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000413953		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000347140		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000358907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000402412		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000441731		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000403821		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000395805	ENST00000546843		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000413953		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000347140		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000358907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000402412		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000441731		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000403821		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000251071	ENST00000546843		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000413953		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000347140		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000358907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000402412		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000441731		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000403821		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5UTR-intron	ENST00000308433	ENST00000546843		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000413953		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000347140		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000358907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000402412		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000441731		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000403821		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-intron	ENST00000417045	ENST00000546843		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000413953		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000347140		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000358907		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000402412		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000441731		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000403821		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
intron-intron	ENST00000538387	ENST00000546843		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57697000	-
5CDS-5UTR	ENST00000262738	ENST00000381176		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	CELSR1	chr22	46929524	-	KIAA1644	chr22	44696857	-
5CDS-5UTR	ENST00000395964	ENST00000381176		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	CELSR1	chr22	46929524	-	KIAA1644	chr22	44696857	-
5UTR-5UTR	ENST00000497509	ENST00000381176		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	CELSR1	chr22	46929524	-	KIAA1644	chr22	44696857	-
5CDS-3UTR	ENST00000394196	ENST00000424032		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000394196	ENST00000600321		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000394196	ENST00000344085		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000394196	ENST00000597976		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000394196	ENST00000422689		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000394196	ENST00000595099		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-3UTR	ENST00000557381	ENST00000424032		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000557381	ENST00000600321		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000557381	ENST00000344085		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000557381	ENST00000597976		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000557381	ENST00000422689		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000557381	ENST00000595099		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-3UTR	ENST00000420239	ENST00000424032		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000420239	ENST00000600321		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000420239	ENST00000344085		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000420239	ENST00000597976		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000420239	ENST00000422689		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
5CDS-intron	ENST00000420239	ENST00000595099		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
intron-3UTR	ENST00000536619	ENST00000424032		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
intron-intron	ENST00000536619	ENST00000600321		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
intron-intron	ENST00000536619	ENST00000344085		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
intron-intron	ENST00000536619	ENST00000597976		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
intron-intron	ENST00000536619	ENST00000422689		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
intron-intron	ENST00000536619	ENST00000595099		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
3UTR-3UTR	ENST00000554122	ENST00000424032		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
3UTR-intron	ENST00000554122	ENST00000600321		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
3UTR-intron	ENST00000554122	ENST00000344085		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
3UTR-intron	ENST00000554122	ENST00000597976		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
3UTR-intron	ENST00000554122	ENST00000422689		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
3UTR-intron	ENST00000554122	ENST00000595099		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ZNF880	chr19	52887102	+
Frame-shit	ENST00000265689	ENST00000319023		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
Frame-shit	ENST00000265689	ENST00000539574		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
5CDS-5UTR	ENST00000265689	ENST00000530055		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
5CDS-3UTR	ENST00000265689	ENST00000526039		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
intron-3CDS	ENST00000533728	ENST00000319023		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
intron-3CDS	ENST00000533728	ENST00000539574		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
intron-5UTR	ENST00000533728	ENST00000530055		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
intron-3UTR	ENST00000533728	ENST00000526039		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
Frame-shit	ENST00000356135	ENST00000319023		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
Frame-shit	ENST00000356135	ENST00000539574		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
5CDS-5UTR	ENST00000356135	ENST00000530055		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
5CDS-3UTR	ENST00000356135	ENST00000526039		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	CHKA	chr11	67836346	-	NADSYN1	chr11	71191801	+
Frame-shit	ENST00000298912	ENST00000216373		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000298912	ENST00000543680		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
5CDS-intron	ENST00000298912	ENST00000555794		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000557215	ENST00000216373		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000557215	ENST00000543680		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
intron-intron	ENST00000557215	ENST00000555794		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556441	ENST00000216373		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
intron-3CDS	ENST00000556441	ENST00000543680		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
intron-intron	ENST00000556441	ENST00000555794		TCGA	RV	SKCM	TCGA-ER-A19W-06A	CLMN	chr14	95786048	-	SOS2	chr14	50587102	-
Frame-shit	ENST00000334983	ENST00000486975		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
In-frame	ENST00000334983	ENST00000451576		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000334983	ENST00000064724		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000334983	ENST00000489485		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
Frame-shit	ENST00000349718	ENST00000486975		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
In-frame	ENST00000349718	ENST00000451576		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000349718	ENST00000064724		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
5CDS-intron	ENST00000349718	ENST00000489485		TCGA	RV	SKCM	TCGA-ER-A42H-01A	CMTM7	chr3	32433557	+	CLDN11	chr3	170425833	+
3UTR-3CDS	ENST00000483271	ENST00000306888		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
3UTR-3CDS	ENST00000483271	ENST00000263925		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
3UTR-intron	ENST00000483271	ENST00000504605		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
In-frame	ENST00000366513	ENST00000306888		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
In-frame	ENST00000366513	ENST00000263925		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
5CDS-intron	ENST00000366513	ENST00000504605		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
In-frame	ENST00000366512	ENST00000306888		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
In-frame	ENST00000366512	ENST00000263925		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
5CDS-intron	ENST00000366512	ENST00000504605		TCGA	RV	SKCM	TCGA-ER-A197-06A	CNST	chr1	246755243	+	LNX1	chr4	54373636	-
In-frame	ENST00000304623	ENST00000263857		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
In-frame	ENST00000304623	ENST00000409681		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
5CDS-intron	ENST00000304623	ENST00000483538		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
In-frame	ENST00000359640	ENST00000263857		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
In-frame	ENST00000359640	ENST00000409681		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
5CDS-intron	ENST00000359640	ENST00000483538		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-3CDS	ENST00000511377	ENST00000263857		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-3CDS	ENST00000511377	ENST00000409681		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-intron	ENST00000511377	ENST00000483538		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
5UTR-3CDS	ENST00000458100	ENST00000263857		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
5UTR-3CDS	ENST00000458100	ENST00000409681		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
5UTR-intron	ENST00000458100	ENST00000483538		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-3CDS	ENST00000503622	ENST00000263857		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-3CDS	ENST00000503622	ENST00000409681		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-intron	ENST00000503622	ENST00000483538		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-3CDS	ENST00000495388	ENST00000263857		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-3CDS	ENST00000495388	ENST00000409681		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
intron-intron	ENST00000495388	ENST00000483538		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	CTNND2	chr5	11732248	-	POLR1A	chr2	86257519	-
In-frame	ENST00000222122	ENST00000084798		TCGA	RV	SKCM	TCGA-FS-A1YX-06A	DBP	chr19	49140113	-	CA11	chr19	49142878	-
intron-3CDS	ENST00000599385	ENST00000084798		TCGA	RV	SKCM	TCGA-FS-A1YX-06A	DBP	chr19	49140113	-	CA11	chr19	49142878	-
intron-3CDS	ENST00000593500	ENST00000084798		TCGA	RV	SKCM	TCGA-FS-A1YX-06A	DBP	chr19	49140113	-	CA11	chr19	49142878	-
In-frame	ENST00000601104	ENST00000084798		TCGA	RV	SKCM	TCGA-FS-A1YX-06A	DBP	chr19	49140113	-	CA11	chr19	49142878	-
intron-3CDS	ENST00000368073	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368073	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368073	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368073	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368073	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-intron	ENST00000368073	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000326837	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000326837	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000326837	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000326837	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000326837	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-intron	ENST00000326837	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368074	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368074	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368074	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368074	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000368074	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-intron	ENST00000368074	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000608310	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000608310	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000608310	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000608310	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000608310	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-intron	ENST00000608310	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000556710	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000556710	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000556710	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000556710	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000556710	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-intron	ENST00000556710	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000610139	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000610139	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000610139	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000610139	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000610139	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-intron	ENST00000610139	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000475733	ENST00000357847		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000475733	ENST00000344492		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000475733	ENST00000275235		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000475733	ENST00000367598		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-3CDS	ENST00000475733	ENST00000494282		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
intron-intron	ENST00000475733	ENST00000367596		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	DCAF8	chr1	160252734	-	AIG1	chr6	143486219	+
5CDS-5UTR	ENST00000263579	ENST00000392679		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
5CDS-3UTR	ENST00000263579	ENST00000467006		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
5CDS-5UTR	ENST00000263579	ENST00000392678		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
5CDS-5UTR	ENST00000263579	ENST00000392680		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
intron-5UTR	ENST00000530860	ENST00000392679		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
intron-3UTR	ENST00000530860	ENST00000467006		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
intron-5UTR	ENST00000530860	ENST00000392678		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
intron-5UTR	ENST00000530860	ENST00000392680		TCGA	RV	SKCM	TCGA-ER-A195-06A	DCPS	chr11	126176639	+	TIRAP	chr11	126160357	+
5CDS-intron	ENST00000228027	ENST00000528105		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
5CDS-5UTR	ENST00000228027	ENST00000304511		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
5CDS-intron	ENST00000228027	ENST00000532180		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
5CDS-intron	ENST00000376262	ENST00000528105		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
5CDS-5UTR	ENST00000376262	ENST00000304511		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
5CDS-intron	ENST00000376262	ENST00000532180		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
3UTR-intron	ENST00000605608	ENST00000528105		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
3UTR-5UTR	ENST00000605608	ENST00000304511		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
3UTR-intron	ENST00000605608	ENST00000532180		TCGA	RV	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85361293	+
5CDS-5UTR	ENST00000367549	ENST00000367704		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
5CDS-5UTR	ENST00000367549	ENST00000432989		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
5CDS-5UTR	ENST00000367549	ENST00000427304		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
5CDS-5UTR	ENST00000367549	ENST00000367702		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
5CDS-5UTR	ENST00000367549	ENST00000367701		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
intron-5UTR	ENST00000485081	ENST00000367704		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
intron-5UTR	ENST00000485081	ENST00000432989		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
intron-5UTR	ENST00000485081	ENST00000427304		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
intron-5UTR	ENST00000485081	ENST00000367702		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
intron-5UTR	ENST00000485081	ENST00000367701		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	DHX9	chr1	182829319	+	ZBTB37	chr1	173839335	+
In-frame	ENST00000280886	ENST00000316157		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	DIP2C	chr10	735434	-	LARP4B	chr10	910210	-
5CDS-intron	ENST00000280886	ENST00000469487		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	DIP2C	chr10	735434	-	LARP4B	chr10	910210	-
intron-3CDS	ENST00000381496	ENST00000316157		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	DIP2C	chr10	735434	-	LARP4B	chr10	910210	-
intron-intron	ENST00000381496	ENST00000469487		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	DIP2C	chr10	735434	-	LARP4B	chr10	910210	-
intron-3CDS	ENST00000540204	ENST00000316157		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	DIP2C	chr10	735434	-	LARP4B	chr10	910210	-
intron-intron	ENST00000540204	ENST00000469487		TCGA	RV	SKCM	TCGA-BF-AAP2-01A	DIP2C	chr10	735434	-	LARP4B	chr10	910210	-
Frame-shit	ENST00000373095	ENST00000373896		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
5CDS-intron	ENST00000373095	ENST00000419155		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
5CDS-intron	ENST00000373095	ENST00000487555		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
5CDS-intron	ENST00000373095	ENST00000312189		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
In-frame	ENST00000373084	ENST00000373896		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
5CDS-intron	ENST00000373084	ENST00000419155		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
5CDS-intron	ENST00000373084	ENST00000487555		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
5CDS-intron	ENST00000373084	ENST00000312189		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
intron-3CDS	ENST00000300434	ENST00000373896		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
intron-intron	ENST00000300434	ENST00000419155		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
intron-intron	ENST00000300434	ENST00000487555		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
intron-intron	ENST00000300434	ENST00000312189		TCGA	RV	SKCM	TCGA-ER-A19E-06A	FAM102A	chr9	130710350	-	PHF19	chr9	123631608	-
intron-3CDS	ENST00000324331	ENST00000328908		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
intron-3CDS	ENST00000324331	ENST00000397588		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
intron-intron	ENST00000324331	ENST00000472453		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
intron-5UTR	ENST00000324331	ENST00000449732		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
intron-5UTR	ENST00000324331	ENST00000343762		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
5UTR-3CDS	ENST00000274680	ENST00000328908		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
5UTR-3CDS	ENST00000274680	ENST00000397588		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
5UTR-intron	ENST00000274680	ENST00000472453		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
5UTR-5UTR	ENST00000274680	ENST00000449732		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
5UTR-5UTR	ENST00000274680	ENST00000343762		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	FARS2	chr6	5261893	+	CDYL	chr6	4891947	+
intron-intron	ENST00000514455	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000514455	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000514455	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000514455	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000514455	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000511566	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000511566	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000511566	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000511566	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000511566	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000376817	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000376817	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000376817	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000376817	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000376817	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000512805	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000512805	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000512805	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000512805	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000512805	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000504726	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000504726	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000504726	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000504726	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000504726	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000511900	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000511900	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000511900	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000511900	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000511900	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000456394	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000456394	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000456394	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000456394	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000456394	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000505461	ENST00000465259		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000505461	ENST00000310053		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000505461	ENST00000392912		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000505461	ENST00000494055		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
intron-intron	ENST00000505461	ENST00000481663		TCGA	RV	SKCM	TCGA-EE-A2MT-06A	GNB2L1	chr5	180663934	-	HLTF	chr3	148780866	-
5CDS-intron	ENST00000437809	ENST00000357028		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000437809	ENST00000292035		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000437809	ENST00000474263		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000368331	ENST00000357028		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000368331	ENST00000292035		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000368331	ENST00000474263		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000271883	ENST00000357028		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000271883	ENST00000292035		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000271883	ENST00000474263		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000361040	ENST00000357028		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000361040	ENST00000292035		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5CDS-intron	ENST00000361040	ENST00000474263		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5UTR-intron	ENST00000471341	ENST00000357028		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5UTR-intron	ENST00000471341	ENST00000292035		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
5UTR-intron	ENST00000471341	ENST00000474263		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	GON4L	chr1	155740858	-	MED27	chr9	134769379	-
Frame-shit	ENST00000361619	ENST00000588161		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000361619	ENST00000262633		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000361619	ENST00000592202		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000361619	ENST00000586618		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000361619	ENST00000589559		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000361619	ENST00000360475		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000361619	ENST00000589871		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000588161		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000262633		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000592202		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000586618		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000589559		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000360475		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
3UTR-3CDS	ENST00000598038	ENST00000589871		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000588161		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000262633		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000592202		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000586618		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000589559		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000360475		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000324894	ENST00000589871		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000588161		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000262633		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000592202		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000586618		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000589559		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000360475		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000358792	ENST00000589871		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000588161		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000262633		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000592202		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000586618		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000589559		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000360475		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
Frame-shit	ENST00000600625	ENST00000589871		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	GTPBP3	chr19	17450408	+	RBM42	chr19	36122042	+
5CDS-intron	ENST00000383812	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000383812	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000383812	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-5UTR	ENST00000383812	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000383812	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000383812	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000383812	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000383812	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-5UTR	ENST00000295981	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000295981	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-5UTR	ENST00000498214	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
3UTR-intron	ENST00000498214	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-5UTR	ENST00000403601	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000403601	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-5UTR	ENST00000416074	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000416074	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-5UTR	ENST00000455057	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
intron-intron	ENST00000455057	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000426895		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000547186		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000397241		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-5UTR	ENST00000413608	ENST00000427853		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000383827		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000455274		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000430793		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
5CDS-intron	ENST00000413608	ENST00000466245		TCGA	RV	SKCM	TCGA-FR-A44A-06A	IL17RC	chr3	9970314	+	TTLL3	chr3	9857758	+
In-frame	ENST00000539801	ENST00000453981		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-5UTR	ENST00000539801	ENST00000432829		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-5UTR	ENST00000539801	ENST00000469391		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000539801	ENST00000382331		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000539801	ENST00000382329		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000539801	ENST00000493666		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
In-frame	ENST00000381652	ENST00000453981		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-5UTR	ENST00000381652	ENST00000432829		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-5UTR	ENST00000381652	ENST00000469391		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000381652	ENST00000382331		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000381652	ENST00000382329		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000381652	ENST00000493666		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
In-frame	ENST00000544510	ENST00000453981		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-5UTR	ENST00000544510	ENST00000432829		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-5UTR	ENST00000544510	ENST00000469391		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000544510	ENST00000382331		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000544510	ENST00000382329		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
5CDS-intron	ENST00000544510	ENST00000493666		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
intron-3CDS	ENST00000487310	ENST00000453981		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
intron-5UTR	ENST00000487310	ENST00000432829		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
intron-5UTR	ENST00000487310	ENST00000469391		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
intron-intron	ENST00000487310	ENST00000382331		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
intron-intron	ENST00000487310	ENST00000382329		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
intron-intron	ENST00000487310	ENST00000493666		TCGA	RV	SKCM	TCGA-WE-A8ZN-06A	JAK2	chr9	5055788	+	DOCK8	chr9	286461	+
In-frame	ENST00000342056	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000342056	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000342056	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000355194	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000355194	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000355194	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000370398	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000370398	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000370398	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000370392	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000370392	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000370392	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000355635	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000355635	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000355635	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000414165	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000414165	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000414165	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000402622	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000402622	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000402622	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000403813	ENST00000389048		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000403813	ENST00000431873		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
5CDS-intron	ENST00000403813	ENST00000498037		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	KCNQ5	chr6	73332315	+	ALK	chr2	29498362	-
In-frame	ENST00000355849	ENST00000337019		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
In-frame	ENST00000355849	ENST00000366889		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
In-frame	ENST00000355849	ENST00000366888		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
5CDS-intron	ENST00000355849	ENST00000542669		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-3CDS	ENST00000520981	ENST00000337019		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-3CDS	ENST00000520981	ENST00000366889		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-3CDS	ENST00000520981	ENST00000366888		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-intron	ENST00000520981	ENST00000542669		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-3CDS	ENST00000522578	ENST00000337019		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-3CDS	ENST00000522578	ENST00000366889		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-3CDS	ENST00000522578	ENST00000366888		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
intron-intron	ENST00000522578	ENST00000542669		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	KHDRBS3	chr8	136555013	+	PACRG	chr6	163483182	+
Frame-shit	ENST00000256858	ENST00000253506		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000591814		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000397790		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000587635		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000427363		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000542384		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000318065		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000545796		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000592223		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000329101		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000256858	ENST00000586434		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-3UTR	ENST00000256858	ENST00000590172		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
Frame-shit	ENST00000398130	ENST00000253506		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000591814		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000397790		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000587635		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000427363		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000542384		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000318065		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000545796		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000592223		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000329101		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-intron	ENST00000398130	ENST00000586434		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
5CDS-3UTR	ENST00000398130	ENST00000590172		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-3CDS	ENST00000592479	ENST00000253506		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000591814		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000397790		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000587635		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000427363		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000542384		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000318065		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000545796		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000592223		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000329101		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-intron	ENST00000592479	ENST00000586434		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
intron-3UTR	ENST00000592479	ENST00000590172		TCGA	RV	SKCM	TCGA-ER-A19T-06A	KIAA1468	chr18	59855264	+	NFATC1	chr18	77287528	+
Frame-shit	ENST00000522447	ENST00000310193		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	LACTB2	chr8	71569991	-	CYP7B1	chr8	65537096	-
5CDS-intron	ENST00000522447	ENST00000523954		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	LACTB2	chr8	71569991	-	CYP7B1	chr8	65537096	-
In-frame	ENST00000276590	ENST00000310193		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	LACTB2	chr8	71569991	-	CYP7B1	chr8	65537096	-
5CDS-intron	ENST00000276590	ENST00000523954		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	LACTB2	chr8	71569991	-	CYP7B1	chr8	65537096	-
intron-3CDS	ENST00000517601	ENST00000310193		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	LACTB2	chr8	71569991	-	CYP7B1	chr8	65537096	-
intron-intron	ENST00000517601	ENST00000523954		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	LACTB2	chr8	71569991	-	CYP7B1	chr8	65537096	-
Frame-shit	ENST00000303127	ENST00000256935		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000303127	ENST00000540750		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000303127	ENST00000520908		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000303127	ENST00000523351		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
Frame-shit	ENST00000515209	ENST00000256935		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000515209	ENST00000540750		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5CDS-5UTR	ENST00000515209	ENST00000520908		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5CDS-intron	ENST00000515209	ENST00000523351		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5UTR-3CDS	ENST00000506310	ENST00000256935		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5UTR-5UTR	ENST00000506310	ENST00000540750		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5UTR-5UTR	ENST00000506310	ENST00000520908		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5UTR-intron	ENST00000506310	ENST00000523351		TCGA	RV	SKCM	TCGA-ER-A19J-06A	LMAN2	chr5	176778174	-	DOCK2	chr5	169174400	+
5UTR-3CDS	ENST00000337338	ENST00000263174		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	LRRC8D	chr1	90309341	+	PALMD	chr1	100127875	+
5UTR-3CDS	ENST00000337338	ENST00000605497		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	LRRC8D	chr1	90309341	+	PALMD	chr1	100127875	+
5UTR-3CDS	ENST00000394593	ENST00000263174		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	LRRC8D	chr1	90309341	+	PALMD	chr1	100127875	+
5UTR-3CDS	ENST00000394593	ENST00000605497		TCGA	RV	SKCM	TCGA-FR-A7UA-06A	LRRC8D	chr1	90309341	+	PALMD	chr1	100127875	+
intron-3CDS	ENST00000454872	ENST00000249837		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000454872	ENST00000261517		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000454872	ENST00000395896		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000454872	ENST00000395898		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-intron	ENST00000454872	ENST00000558919		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000473253	ENST00000249837		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000473253	ENST00000261517		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000473253	ENST00000395896		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-3CDS	ENST00000473253	ENST00000395898		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
intron-intron	ENST00000473253	ENST00000558919		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	NAALADL2	chr3	174158822	+	VPS13C	chr15	62306191	-
Frame-shit	ENST00000282516	ENST00000282469		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000282516	ENST00000509059		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000282516	ENST00000356031		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000282516	ENST00000440995		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
5CDS-intron	ENST00000282516	ENST00000303129		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000448238	ENST00000282469		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000448238	ENST00000509059		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000448238	ENST00000356031		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
Frame-shit	ENST00000448238	ENST00000440995		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
5CDS-intron	ENST00000448238	ENST00000303129		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
intron-3CDS	ENST00000504430	ENST00000282469		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
intron-3CDS	ENST00000504430	ENST00000509059		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
intron-3CDS	ENST00000504430	ENST00000356031		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
intron-3CDS	ENST00000504430	ENST00000440995		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
intron-intron	ENST00000504430	ENST00000303129		TCGA	RV	SKCM	TCGA-GN-A264-06A	NIPBL	chr5	37046301	+	SPEF2	chr5	35641533	+
In-frame	ENST00000395782	ENST00000360835		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
In-frame	ENST00000395782	ENST00000290460		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000395782	ENST00000470433		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000395783	ENST00000360835		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000395783	ENST00000290460		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000395783	ENST00000470433		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000435340	ENST00000360835		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000435340	ENST00000290460		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000435340	ENST00000470433		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000255389	ENST00000360835		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000255389	ENST00000290460		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000255389	ENST00000470433		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000395781	ENST00000360835		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
Frame-shit	ENST00000395781	ENST00000290460		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
5CDS-intron	ENST00000395781	ENST00000470433		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
intron-3CDS	ENST00000484838	ENST00000360835		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
intron-3CDS	ENST00000484838	ENST00000290460		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
intron-intron	ENST00000484838	ENST00000470433		TCGA	RV	SKCM	TCGA-ER-A197-06A	PEMT	chr17	17480234	-	SCUBE1	chr22	43654341	-
5CDS-5UTR	ENST00000375749	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
5CDS-5UTR	ENST00000375749	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
5CDS-5UTR	ENST00000375730	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
5CDS-5UTR	ENST00000375730	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
intron-5UTR	ENST00000539210	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
intron-5UTR	ENST00000539210	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
3UTR-5UTR	ENST00000486717	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
3UTR-5UTR	ENST00000486717	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	POFUT1	chr20	30804524	+	PRICKLE2	chr3	64184643	-
Frame-shit	ENST00000264220	ENST00000354981		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000264220	ENST00000378003		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000264220	ENST00000355755		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
5CDS-5UTR	ENST00000264220	ENST00000408042		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
intron-3CDS	ENST00000507648	ENST00000354981		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000507648	ENST00000378003		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000507648	ENST00000355755		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
intron-5UTR	ENST00000507648	ENST00000408042		TCGA	RV	SKCM	TCGA-EE-A183-06A	PPAT	chr4	57301516	-	KIF16B	chr20	16509085	-
5CDS-intron	ENST00000549396	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000549396	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000549396	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000550584	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000550584	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000550584	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000549325	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000549325	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000549325	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
intron-intron	ENST00000545296	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
intron-intron	ENST00000545296	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
intron-intron	ENST00000545296	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000550359	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000550359	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000550359	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000407050	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000407050	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000407050	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000333447	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000333447	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000333447	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000548586	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000548586	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000548586	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000443686	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000443686	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000443686	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000552948	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000552948	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000552948	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000541570	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000541570	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000541570	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000541017	ENST00000548058		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000541017	ENST00000261206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
5CDS-intron	ENST00000541017	ENST00000548324		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	PPFIA2	chr12	81732959	-	ACSS3	chr12	81416162	+
Frame-shit	ENST00000328257	ENST00000356136		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000328257	ENST00000528420		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000328257	ENST00000533454		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000328257	ENST00000531818		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000328257	ENST00000532130		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000328257	ENST00000539288		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000328257	ENST00000525872		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000328257	ENST00000538870		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000398427	ENST00000356136		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000398427	ENST00000528420		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000398427	ENST00000533454		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000398427	ENST00000531818		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000398427	ENST00000532130		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000398427	ENST00000539288		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000398427	ENST00000525872		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000398427	ENST00000538870		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000542710	ENST00000356136		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000542710	ENST00000528420		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000542710	ENST00000533454		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000542710	ENST00000531818		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-5UTR	ENST00000542710	ENST00000532130		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000542710	ENST00000539288		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000542710	ENST00000525872		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-intron	ENST00000542710	ENST00000538870		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000543525	ENST00000356136		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
Frame-shit	ENST00000543525	ENST00000528420		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000543525	ENST00000533454		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000543525	ENST00000531818		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-5UTR	ENST00000543525	ENST00000532130		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000543525	ENST00000539288		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000543525	ENST00000525872		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
5CDS-intron	ENST00000543525	ENST00000538870		TCGA	RV	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73965748	+	UVRAG	chr11	75694431	+
intron-3CDS	ENST00000413953	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000413953	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000413953	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3UTR	ENST00000413953	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-intron	ENST00000413953	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3CDS	ENST00000347140	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3CDS	ENST00000347140	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3CDS	ENST00000347140	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3UTR	ENST00000347140	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-intron	ENST00000347140	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000358907	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000358907	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000358907	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3UTR	ENST00000358907	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-intron	ENST00000358907	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3CDS	ENST00000402412	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3CDS	ENST00000402412	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3CDS	ENST00000402412	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-3UTR	ENST00000402412	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
5UTR-intron	ENST00000402412	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000441731	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000441731	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000441731	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3UTR	ENST00000441731	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-intron	ENST00000441731	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000403821	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000403821	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000403821	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3UTR	ENST00000403821	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-intron	ENST00000403821	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000546843	ENST00000353364		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000546843	ENST00000280377		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3CDS	ENST00000546843	ENST00000393654		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-3UTR	ENST00000546843	ENST00000550632		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-intron	ENST00000546843	ENST00000312635		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57789532	-	USP15	chr12	62749112	+
intron-intron	ENST00000429054	ENST00000546309		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000429054	ENST00000397244		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000429054	ENST00000388870		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000429054	ENST00000297792		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
5CDS-intron	ENST00000259939	ENST00000546309		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
5CDS-intron	ENST00000259939	ENST00000397244		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
5CDS-intron	ENST00000259939	ENST00000388870		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
5CDS-intron	ENST00000259939	ENST00000297792		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000486622	ENST00000546309		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000486622	ENST00000397244		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000486622	ENST00000388870		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
intron-intron	ENST00000486622	ENST00000297792		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	RNF144B	chr6	18427916	+	KDM1B	chr6	18197288	+
In-frame	ENST00000399799	ENST00000296755		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	ROCK1	chr18	18546878	-	MAP1B	chr5	71479570	+
5CDS-intron	ENST00000399799	ENST00000504183		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	ROCK1	chr18	18546878	-	MAP1B	chr5	71479570	+
Frame-shit	ENST00000529163	ENST00000334528		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000529163	ENST00000561249		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000529163	ENST00000559047		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000529163	ENST00000558197		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000529163	ENST00000559150		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000529163	ENST00000320930		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000394920	ENST00000334528		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000394920	ENST00000561249		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000394920	ENST00000559047		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000394920	ENST00000558197		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000394920	ENST00000559150		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000394920	ENST00000320930		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000527914	ENST00000334528		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000527914	ENST00000561249		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000527914	ENST00000559047		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000527914	ENST00000558197		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000527914	ENST00000559150		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000527914	ENST00000320930		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
In-frame	ENST00000262584	ENST00000334528		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
In-frame	ENST00000262584	ENST00000561249		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
In-frame	ENST00000262584	ENST00000559047		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000262584	ENST00000558197		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000262584	ENST00000559150		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
5CDS-intron	ENST00000262584	ENST00000320930		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
intron-3CDS	ENST00000528957	ENST00000334528		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
intron-3CDS	ENST00000528957	ENST00000561249		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
intron-3CDS	ENST00000528957	ENST00000559047		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
intron-intron	ENST00000528957	ENST00000558197		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
intron-intron	ENST00000528957	ENST00000559150		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
intron-intron	ENST00000528957	ENST00000320930		TCGA	RV	SKCM	TCGA-EE-A29Q-06A	RPL8	chr8	146015154	-	FMN1	chr15	33096533	-
Frame-shit	ENST00000268099	ENST00000339082		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	SCAMP2	chr15	75165540	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000268099	ENST00000601723		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	SCAMP2	chr15	75165540	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000268099	ENST00000340093		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	SCAMP2	chr15	75165540	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000268099	ENST00000221264		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	SCAMP2	chr15	75165540	-	PLAUR	chr19	44160792	-
Frame-shit	ENST00000374759	ENST00000331134		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
Frame-shit	ENST00000374759	ENST00000374747		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000374759	ENST00000539314		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000374759	ENST00000572760		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000374759	ENST00000573876		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000374759	ENST00000574344		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
Frame-shit	ENST00000288439	ENST00000331134		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
Frame-shit	ENST00000288439	ENST00000374747		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-5UTR	ENST00000288439	ENST00000539314		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000288439	ENST00000572760		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000288439	ENST00000573876		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000288439	ENST00000574344		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
intron-3CDS	ENST00000546352	ENST00000331134		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
intron-3CDS	ENST00000546352	ENST00000374747		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
intron-5UTR	ENST00000546352	ENST00000539314		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
intron-intron	ENST00000546352	ENST00000572760		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
intron-intron	ENST00000546352	ENST00000573876		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
intron-intron	ENST00000546352	ENST00000574344		TCGA	RV	SKCM	TCGA-ER-A19W-06A	SLC38A10	chr17	79263491	-	NPLOC4	chr17	79589304	-
5CDS-intron	ENST00000286398	ENST00000374079		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000286398	ENST00000307564		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000286398	ENST00000374088		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000286398	ENST00000492875		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000286398	ENST00000223791		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000286398	ENST00000374075		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000286398	ENST00000312033		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000374079		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000307564		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000374088		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000492875		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000223791		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000374075		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374793	ENST00000312033		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000374079		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000307564		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000374088		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000492875		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000223791		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000374075		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000303219	ENST00000312033		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000374079		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000307564		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000374088		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000492875		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000223791		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000374075		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
5CDS-intron	ENST00000374787	ENST00000312033		TCGA	RV	SKCM	TCGA-ER-A19E-06A	SMC2	chr9	106874095	+	AKNA	chr9	117126899	-
In-frame	ENST00000337137	ENST00000541742		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000337137	ENST00000490107		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000337137	ENST00000388985		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000337137	ENST00000366517		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000337137	ENST00000403792		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000380995	ENST00000541742		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000380995	ENST00000490107		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000380995	ENST00000388985		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000380995	ENST00000366517		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000380995	ENST00000403792		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407381	ENST00000541742		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407381	ENST00000490107		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000407381	ENST00000388985		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000407381	ENST00000366517		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000407381	ENST00000403792		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000355704	ENST00000541742		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000355704	ENST00000490107		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000355704	ENST00000388985		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000355704	ENST00000366517		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000355704	ENST00000403792		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000472791	ENST00000541742		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000472791	ENST00000490107		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000472791	ENST00000388985		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
intron-5UTR	ENST00000472791	ENST00000366517		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
intron-intron	ENST00000472791	ENST00000403792		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000406733	ENST00000541742		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000406733	ENST00000490107		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
In-frame	ENST00000406733	ENST00000388985		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000406733	ENST00000366517		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000406733	ENST00000403792		TCGA	RV	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47274619	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000551577	ENST00000546244		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000551577	ENST00000343810		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000551577	ENST00000550165		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000551577	ENST00000547182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000551577	ENST00000357123		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000266534	ENST00000546244		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000266534	ENST00000343810		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000266534	ENST00000550165		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000266534	ENST00000547182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000266534	ENST00000357123		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000536799	ENST00000546244		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000536799	ENST00000343810		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000536799	ENST00000550165		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000536799	ENST00000547182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
5CDS-intron	ENST00000536799	ENST00000357123		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
intron-intron	ENST00000546978	ENST00000546244		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
intron-intron	ENST00000546978	ENST00000343810		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
intron-intron	ENST00000546978	ENST00000550165		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
intron-intron	ENST00000546978	ENST00000547182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
intron-intron	ENST00000546978	ENST00000357123		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	TMEM117	chr12	44238731	+	MCRS1	chr12	49959998	-
In-frame	ENST00000514135	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000514135	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000514135	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000514135	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000514135	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
5CDS-5UTR	ENST00000514135	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000296595	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000296595	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000296595	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000296595	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000296595	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
5CDS-5UTR	ENST00000296595	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000506536	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000506536	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000506536	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000506536	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000506536	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-5UTR	ENST00000506536	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000512429	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000512429	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000512429	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000512429	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
In-frame	ENST00000512429	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
5CDS-5UTR	ENST00000512429	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000509387	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000509387	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000509387	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000509387	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000509387	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-5UTR	ENST00000509387	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-5UTR	ENST00000511218	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
intron-5UTR	ENST00000515293	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87536630	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000502346	ENST00000326685		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
Frame-shit	ENST00000502346	ENST00000356541		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
Frame-shit	ENST00000502346	ENST00000309868		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
Frame-shit	ENST00000502346	ENST00000506113		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
Frame-shit	ENST00000502346	ENST00000504238		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
Frame-shit	ENST00000502346	ENST00000508983		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5CDS-intron	ENST00000502346	ENST00000517451		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5CDS-intron	ENST00000502346	ENST00000519549		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000326685		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000356541		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000309868		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000506113		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000504238		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000508983		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-intron	ENST00000511450	ENST00000517451		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
5UTR-intron	ENST00000511450	ENST00000519549		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	ABLIM3	chr5	148596522	+
In-frame	ENST00000436636	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000436636	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000436636	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000436636	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000436636	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000538048	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000538048	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000538048	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000538048	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000538048	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000369326	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000369326	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000369326	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000369326	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000369326	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000341852	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000341852	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000341852	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000341852	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000341852	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000284483	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000284483	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000284483	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000284483	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000284483	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000470834	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000470834	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000470834	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000470834	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000470834	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000460047	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000460047	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000460047	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000460047	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000460047	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000475336	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000475336	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000475336	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000475336	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000475336	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000488470	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000488470	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000488470	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000488470	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000488470	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000357327	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000357327	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
In-frame	ENST00000357327	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000357327	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
5CDS-intron	ENST00000357327	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-3CDS	ENST00000464785	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-3CDS	ENST00000464785	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-3CDS	ENST00000464785	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-intron	ENST00000464785	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-intron	ENST00000464785	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-3CDS	ENST00000465393	ENST00000273666		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-3CDS	ENST00000465393	ENST00000471454		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-3CDS	ENST00000465393	ENST00000472879		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-intron	ENST00000465393	ENST00000497029		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
intron-intron	ENST00000465393	ENST00000492541		TCGA	RV	SKCM	TCGA-EE-A2M6-06A	TNIK	chr3	170801944	-	STXBP5L	chr3	121097563	+
Frame-shit	ENST00000344204	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000344204	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000344204	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-intron	ENST00000344204	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
Frame-shit	ENST00000537187	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000537187	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000537187	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-intron	ENST00000537187	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000509967	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000509967	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000509967	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-intron	ENST00000509967	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000515710	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000515710	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000515710	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-intron	ENST00000515710	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000344135	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000344135	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000344135	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-intron	ENST00000344135	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
Frame-shit	ENST00000344204	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000344204	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000344204	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-intron	ENST00000344204	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
Frame-shit	ENST00000537187	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000537187	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-5UTR	ENST00000537187	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
5CDS-intron	ENST00000537187	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000509967	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000509967	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000509967	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-intron	ENST00000509967	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000515710	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000515710	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000515710	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-intron	ENST00000515710	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000344135	ENST00000226951		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000344135	ENST00000442825		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-5UTR	ENST00000344135	ENST00000507719		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-intron	ENST00000344135	ENST00000515667		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	TRIO	chr5	14401173	+	CLNK	chr4	10586579	-
intron-3CDS	ENST00000530267	ENST00000263671		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
intron-3CDS	ENST00000530267	ENST00000376332		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
intron-5UTR	ENST00000530267	ENST00000534159		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
intron-3CDS	ENST00000530535	ENST00000263671		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
intron-3CDS	ENST00000530535	ENST00000376332		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
intron-5UTR	ENST00000530535	ENST00000534159		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
Frame-shit	ENST00000529308	ENST00000263671		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
Frame-shit	ENST00000529308	ENST00000376332		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
5CDS-5UTR	ENST00000529308	ENST00000534159		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
5UTR-3CDS	ENST00000441408	ENST00000263671		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
5UTR-3CDS	ENST00000441408	ENST00000376332		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
5UTR-5UTR	ENST00000441408	ENST00000534159		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
Frame-shit	ENST00000526425	ENST00000263671		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
Frame-shit	ENST00000526425	ENST00000376332		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
5CDS-5UTR	ENST00000526425	ENST00000534159		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	USP35	chr11	77911854	+	CHRDL2	chr11	74429877	-
In-frame	ENST00000355653	ENST00000524630		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000529919		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000399039		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000360682		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000361796		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000361391		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000530094		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000428599		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000361332		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000527467		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000415361		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000532245		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000532463		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000528232		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000529986		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000531014		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000358694		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000526772		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000532787		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000533667		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000529873		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000525902		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000529526		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000532649		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000426142		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000532844		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000528621		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000399050		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000526357		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000530748		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000534579		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000355653	ENST00000526938		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000524630		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000529919		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000399039		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000360682		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000361796		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000361391		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000530094		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000428599		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000361332		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000527467		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000415361		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000532245		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000532463		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000528232		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000529986		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000531014		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000358694		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000526772		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000532787		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000533667		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000529873		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000525902		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000529526		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000532649		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000426142		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000532844		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000528621		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000399050		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000526357		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000530748		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000534579		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000587173	ENST00000526938		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000524630		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000529919		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000399039		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000360682		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000361796		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000361391		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000530094		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000428599		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000361332		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000527467		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000415361		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000532245		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000532463		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000528232		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000529986		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000531014		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000358694		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000526772		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000532787		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000533667		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000529873		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000525902		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000529526		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000532649		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000426142		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000532844		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000528621		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000399050		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000526357		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000530748		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000534579		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
intron-3CDS	ENST00000420567	ENST00000526938		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	VAT1	chr17	41166624	-	CTNND1	chr11	57574387	+
In-frame	ENST00000360586	ENST00000395425		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
In-frame	ENST00000360586	ENST00000247191		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
In-frame	ENST00000420358	ENST00000395425		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
In-frame	ENST00000420358	ENST00000247191		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
intron-3CDS	ENST00000359167	ENST00000395425		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
intron-3CDS	ENST00000359167	ENST00000247191		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
In-frame	ENST00000421192	ENST00000395425		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
In-frame	ENST00000421192	ENST00000247191		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	WDHD1	chr14	55467221	-	DLGAP5	chr14	55621524	-
5CDS-5UTR	ENST00000265107	ENST00000406902		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000265107	ENST00000361034		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000265107	ENST00000490378		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000265107	ENST00000408031		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000504564	ENST00000406902		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000504564	ENST00000361034		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000504564	ENST00000490378		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-intron	ENST00000504564	ENST00000408031		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
3UTR-5UTR	ENST00000510699	ENST00000406902		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
3UTR-intron	ENST00000510699	ENST00000361034		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
3UTR-intron	ENST00000510699	ENST00000490378		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
3UTR-intron	ENST00000510699	ENST00000408031		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	WDR70	chr5	37605340	+	GRAMD4	chr22	47022648	+
5CDS-5UTR	ENST00000517970	ENST00000327835		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
5CDS-intron	ENST00000517970	ENST00000520336		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
intron-5UTR	ENST00000349423	ENST00000327835		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
intron-intron	ENST00000349423	ENST00000520336		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
intron-5UTR	ENST00000341922	ENST00000327835		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
intron-intron	ENST00000341922	ENST00000520336		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
5CDS-5UTR	ENST00000265428	ENST00000327835		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
5CDS-intron	ENST00000265428	ENST00000520336		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
intron-5UTR	ENST00000523863	ENST00000327835		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
intron-intron	ENST00000523863	ENST00000520336		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	WWP1	chr8	87414432	+	ZNF704	chr8	81733850	-
5CDS-5UTR	ENST00000216254	ENST00000361132		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000216254	ENST00000393371		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000216254	ENST00000522500		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000216254	ENST00000519883		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000396512	ENST00000361132		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-5UTR	ENST00000396512	ENST00000393371		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000396512	ENST00000522500		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5CDS-intron	ENST00000396512	ENST00000519883		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000466237	ENST00000361132		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
intron-5UTR	ENST00000466237	ENST00000393371		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000466237	ENST00000522500		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
intron-intron	ENST00000466237	ENST00000519883		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	ACO2	chr22	41865186	+	RASGEF1C	chr5	179565058	-
5UTR-3CDS	ENST00000378330	ENST00000268720		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
5UTR-3CDS	ENST00000378330	ENST00000319518		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
5UTR-intron	ENST00000378330	ENST00000566398		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
5UTR-3CDS	ENST00000301030	ENST00000268720		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
5UTR-3CDS	ENST00000301030	ENST00000319518		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
5UTR-intron	ENST00000301030	ENST00000566398		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
intron-3CDS	ENST00000563291	ENST00000268720		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
intron-3CDS	ENST00000563291	ENST00000319518		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
intron-intron	ENST00000563291	ENST00000566398		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
intron-3CDS	ENST00000567736	ENST00000268720		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
intron-3CDS	ENST00000567736	ENST00000319518		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
intron-intron	ENST00000567736	ENST00000566398		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ANKRD11	chr16	89556653	-	CPNE7	chr16	89657415	+
5UTR-5UTR	ENST00000393829	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
5UTR-5UTR	ENST00000546249	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
5UTR-5UTR	ENST00000537728	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
5UTR-5UTR	ENST00000264649	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
5UTR-5UTR	ENST00000585525	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
5UTR-5UTR	ENST00000343619	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
5UTR-5UTR	ENST00000544137	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
intron-5UTR	ENST00000587797	ENST00000293328		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ATP6V0A1	chr17	40610981	+	STAT5B	chr17	40384155	-
Frame-shit	ENST00000295966	ENST00000476844		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000295966	ENST00000492590		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000295966	ENST00000466788		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000295966	ENST00000468189		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000295966	ENST00000341848		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000482387	ENST00000476844		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
Frame-shit	ENST00000482387	ENST00000492590		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000482387	ENST00000466788		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000482387	ENST00000468189		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000482387	ENST00000341848		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000472469	ENST00000476844		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000472469	ENST00000492590		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000472469	ENST00000466788		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000472469	ENST00000468189		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000472469	ENST00000341848		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000491845	ENST00000476844		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000491845	ENST00000492590		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000491845	ENST00000466788		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000491845	ENST00000468189		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000491845	ENST00000341848		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000478363	ENST00000476844		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000478363	ENST00000492590		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000478363	ENST00000466788		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000478363	ENST00000468189		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000478363	ENST00000341848		TCGA	RV	SKCM	TCGA-ER-A2NB-01A	C3orf67	chr3	58899434	-	FHIT	chr3	59738047	-
In-frame	ENST00000262570	ENST00000421797		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000262570	ENST00000429546		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000262570	ENST00000352689		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000262570	ENST00000498778		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
In-frame	ENST00000448878	ENST00000421797		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000448878	ENST00000429546		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000448878	ENST00000352689		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000448878	ENST00000498778		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
intron-3CDS	ENST00000476546	ENST00000421797		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
intron-intron	ENST00000476546	ENST00000429546		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
intron-intron	ENST00000476546	ENST00000352689		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
intron-intron	ENST00000476546	ENST00000498778		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
In-frame	ENST00000542753	ENST00000421797		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000542753	ENST00000429546		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000542753	ENST00000352689		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
5CDS-intron	ENST00000542753	ENST00000498778		TCGA	RV	SKCM	TCGA-EE-A20I-06A	CHCHD3	chr7	132754902	-	MKLN1	chr7	131096065	+
Frame-shit	ENST00000226951	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000226951	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-intron	ENST00000226951	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000442825	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000442825	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-intron	ENST00000442825	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000507719	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000507719	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-intron	ENST00000507719	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
intron-3CDS	ENST00000515667	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
intron-3CDS	ENST00000515667	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
intron-intron	ENST00000515667	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-01A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000226951	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000226951	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-intron	ENST00000226951	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000442825	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000442825	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-intron	ENST00000442825	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000507719	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
Frame-shit	ENST00000507719	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-intron	ENST00000507719	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
intron-3CDS	ENST00000515667	ENST00000265107		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
intron-3CDS	ENST00000515667	ENST00000504564		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
intron-intron	ENST00000515667	ENST00000510699		TCGA	RV	SKCM	TCGA-D9-A1X3-06A	CLNK	chr4	10542118	-	WDR70	chr5	37438024	+
5CDS-5UTR	ENST00000324238	ENST00000293493		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-5UTR	ENST00000324238	ENST00000339069		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-5UTR	ENST00000324238	ENST00000314537		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000352855		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000577353		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000398285		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000548791		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000551817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000550606		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000552724		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000547258		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5CDS-intron	ENST00000324238	ENST00000551221		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-5UTR	ENST00000544695	ENST00000293493		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-5UTR	ENST00000544695	ENST00000339069		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-5UTR	ENST00000544695	ENST00000314537		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000352855		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000577353		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000398285		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000548791		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000551817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000550606		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000552724		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000547258		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
5UTR-intron	ENST00000544695	ENST00000551221		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-5UTR	ENST00000577725	ENST00000293493		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-5UTR	ENST00000577725	ENST00000339069		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-5UTR	ENST00000577725	ENST00000314537		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000352855		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000577353		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000398285		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000548791		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000551817		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000550606		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000552724		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000547258		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
intron-intron	ENST00000577725	ENST00000551221		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CRLF3	chr17	29151541	-	CRHR1	chr17	43893829	+
Frame-shit	ENST00000342239	ENST00000370418		TCGA	RV	SKCM	TCGA-W3-AA1W-06A	DNMBP	chr10	101714971	-	CPN1	chr10	101816909	-
Frame-shit	ENST00000324109	ENST00000370418		TCGA	RV	SKCM	TCGA-W3-AA1W-06A	DNMBP	chr10	101714971	-	CPN1	chr10	101816909	-
intron-3CDS	ENST00000543621	ENST00000370418		TCGA	RV	SKCM	TCGA-W3-AA1W-06A	DNMBP	chr10	101714971	-	CPN1	chr10	101816909	-
intron-3CDS	ENST00000540316	ENST00000370418		TCGA	RV	SKCM	TCGA-W3-AA1W-06A	DNMBP	chr10	101714971	-	CPN1	chr10	101816909	-
intron-3CDS	ENST00000472036	ENST00000370418		TCGA	RV	SKCM	TCGA-W3-AA1W-06A	DNMBP	chr10	101714971	-	CPN1	chr10	101816909	-
intron-5UTR	ENST00000398514	ENST00000505432		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
intron-5UTR	ENST00000398514	ENST00000261796		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000343218	ENST00000505432		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000343218	ENST00000261796		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
intron-5UTR	ENST00000534907	ENST00000505432		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
intron-5UTR	ENST00000534907	ENST00000261796		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
5UTR-5UTR	ENST00000504965	ENST00000505432		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
5UTR-5UTR	ENST00000504965	ENST00000261796		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	DPYSL3	chr5	146889041	-	IL17B	chr5	148756588	-
Frame-shit	ENST00000216190	ENST00000404984		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000216190	ENST00000402050		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000216190	ENST00000438376		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000216190	ENST00000325979		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000216190	ENST00000497572		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000478547	ENST00000404984		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000478547	ENST00000402050		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000478547	ENST00000438376		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
Frame-shit	ENST00000478547	ENST00000325979		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000478547	ENST00000497572		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
In-frame	ENST00000541106	ENST00000404984		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
In-frame	ENST00000541106	ENST00000402050		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
In-frame	ENST00000541106	ENST00000438376		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
In-frame	ENST00000541106	ENST00000325979		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000541106	ENST00000497572		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405442	ENST00000404984		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405442	ENST00000402050		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405442	ENST00000438376		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405442	ENST00000325979		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
intron-intron	ENST00000405442	ENST00000497572		TCGA	RV	SKCM	TCGA-ER-A19H-06A	EIF3D	chr22	36906902	-	IQCE	chr7	2641075	+
5CDS-3UTR	ENST00000296933	ENST00000468643		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000296933	ENST00000400577		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000265094	ENST00000468643		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000265094	ENST00000400577		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000393802	ENST00000468643		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
5CDS-3UTR	ENST00000393802	ENST00000400577		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
intron-3UTR	ENST00000425623	ENST00000468643		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
intron-3UTR	ENST00000425623	ENST00000400577		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
intron-3UTR	ENST00000522891	ENST00000468643		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
intron-3UTR	ENST00000522891	ENST00000400577		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	FBXW11	chr5	171433462	-	RBM11	chr21	15593418	+
intron-3CDS	ENST00000340149	ENST00000373184		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-3CDS	ENST00000340149	ENST00000373187		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-3CDS	ENST00000340149	ENST00000356100		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-3CDS	ENST00000340149	ENST00000373190		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-3CDS	ENST00000340149	ENST00000373193		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-3CDS	ENST00000340149	ENST00000373198		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-3CDS	ENST00000340149	ENST00000373201		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
intron-intron	ENST00000340149	ENST00000485499		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000373184		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000373187		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000356100		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000373190		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000373193		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000373198		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
Frame-shit	ENST00000361507	ENST00000373201		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5CDS-intron	ENST00000361507	ENST00000485499		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000373184		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000373187		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000356100		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000373190		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000373193		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000373198		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-3CDS	ENST00000526030	ENST00000373201		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5UTR-intron	ENST00000526030	ENST00000485499		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	PTPRT	chr20	40828028	-
5CDS-5UTR	ENST00000245206	ENST00000570308		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000245206	ENST00000219070		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000245206	ENST00000543485		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000245206	ENST00000437642		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000434819	ENST00000570308		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000434819	ENST00000219070		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000434819	ENST00000543485		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5CDS-5UTR	ENST00000434819	ENST00000437642		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5UTR-5UTR	ENST00000564400	ENST00000570308		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5UTR-5UTR	ENST00000564400	ENST00000219070		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5UTR-5UTR	ENST00000564400	ENST00000543485		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
5UTR-5UTR	ENST00000564400	ENST00000437642		TCGA	RV	SKCM	TCGA-EB-A82B-01A	GOT2	chr16	58752100	-	MMP2	chr16	55516821	+
Frame-shit	ENST00000285900	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000285900	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000285900	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000285900	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000285900	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000285900	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000285900	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000285900	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000285900	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000285900	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000285900	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000518142	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000518142	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000518142	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000518142	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518142	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518142	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518142	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518142	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518142	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000518142	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000518142	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000340592	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000340592	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000340592	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000340592	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000340592	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000340592	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000340592	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000340592	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000340592	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000340592	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000340592	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000521843	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000521843	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000521843	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000521843	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000521843	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000521843	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000521843	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000521843	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000521843	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000521843	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000521843	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000448073	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000448073	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000448073	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000448073	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000448073	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000448073	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000448073	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000448073	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000448073	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000448073	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000448073	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000518783	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000518783	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
Frame-shit	ENST00000518783	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000518783	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518783	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518783	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518783	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518783	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-intron	ENST00000518783	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000518783	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
5CDS-5UTR	ENST00000518783	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-3CDS	ENST00000518862	ENST00000361732		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-3CDS	ENST00000518862	ENST00000509734		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-3CDS	ENST00000518862	ENST00000354868		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-5UTR	ENST00000518862	ENST00000521422		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-intron	ENST00000518862	ENST00000504177		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-intron	ENST00000518862	ENST00000354312		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-intron	ENST00000518862	ENST00000345306		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-intron	ENST00000518862	ENST00000305138		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-intron	ENST00000518862	ENST00000282891		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-5UTR	ENST00000518862	ENST00000358030		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
intron-5UTR	ENST00000518862	ENST00000380774		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	GRIA1	chr5	153085627	+	RAD17	chr5	68677728	+
In-frame	ENST00000413795	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
5CDS-intron	ENST00000413795	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
In-frame	ENST00000369138	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
5CDS-intron	ENST00000369138	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
In-frame	ENST00000421544	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
5CDS-intron	ENST00000421544	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
In-frame	ENST00000358361	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
5CDS-intron	ENST00000358361	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
In-frame	ENST00000318991	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
5CDS-intron	ENST00000318991	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
In-frame	ENST00000369137	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
5CDS-intron	ENST00000369137	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
intron-3CDS	ENST00000369134	ENST00000264039		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
intron-intron	ENST00000369134	ENST00000466624		TCGA	RV	SKCM	TCGA-D3-A2JP-06A	GRIK2	chr6	101847268	+	GPC1	chr2	241398447	+
Frame-shit	ENST00000265395	ENST00000288602		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	HIBADH	chr7	27668990	-	BRAF	chr7	140501360	-
5CDS-intron	ENST00000395388	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000395388	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000395388	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000374982	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000374982	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000374982	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383127	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383127	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383127	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000459705	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000459705	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000459705	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000434866	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000434866	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000434866	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000416883	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000416883	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000416883	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000481943	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000481943	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000481943	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411505	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411505	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411505	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000414698	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000414698	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000414698	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000546379	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000546379	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000546379	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000493431	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000493431	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000493431	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000418111	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000418111	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000418111	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383259	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383259	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383259	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000551750	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000551750	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000551750	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000461633	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000461633	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000461633	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383258	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383258	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000383258	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000442960	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000442960	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000442960	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000549531	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000549531	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000549531	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000482781	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000482781	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000482781	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000415767	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000415767	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000415767	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411524	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411524	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000411524	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000553193	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000553193	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000553193	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000498597	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000498597	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000498597	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000427753	ENST00000261531		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000427753	ENST00000554775		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
intron-intron	ENST00000427753	ENST00000555761		TCGA	RV	SKCM	TCGA-EE-A29T-06A	HLA-DRA	chr6	32412823	+	SNW1	chr14	78189203	-
In-frame	ENST00000302006	ENST00000274181		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	IRX1	chr5	3596495	+	ADAMTS16	chr5	5182157	+
In-frame	ENST00000302006	ENST00000511368		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	IRX1	chr5	3596495	+	ADAMTS16	chr5	5182157	+
5CDS-intron	ENST00000302006	ENST00000513709		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	IRX1	chr5	3596495	+	ADAMTS16	chr5	5182157	+
Frame-shit	ENST00000367765	ENST00000368069		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
Frame-shit	ENST00000367765	ENST00000241704		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
In-frame	ENST00000367767	ENST00000368069		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
In-frame	ENST00000367767	ENST00000241704		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
In-frame	ENST00000361580	ENST00000368069		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
In-frame	ENST00000361580	ENST00000241704		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
Frame-shit	ENST00000538366	ENST00000368069		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
Frame-shit	ENST00000538366	ENST00000241704		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
Frame-shit	ENST00000540905	ENST00000368069		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
Frame-shit	ENST00000540905	ENST00000241704		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
intron-3CDS	ENST00000490550	ENST00000368069		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
intron-3CDS	ENST00000490550	ENST00000241704		TCGA	RV	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160282957	-
Frame-shit	ENST00000409837	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000409837	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
In-frame	ENST00000409837	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000409340	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
In-frame	ENST00000409340	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000409340	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000260953	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
In-frame	ENST00000260953	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000260953	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000409965	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
In-frame	ENST00000409965	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000409965	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000392640	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000392640	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
In-frame	ENST00000392640	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
intron-3CDS	ENST00000308099	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
intron-3CDS	ENST00000308099	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
intron-3CDS	ENST00000308099	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000410097	ENST00000295408		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
In-frame	ENST00000410097	ENST00000421804		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
Frame-shit	ENST00000410097	ENST00000409780		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	METTL5	chr2	170676071	-	MERTK	chr2	112785928	+
5UTR-3CDS	ENST00000355630	ENST00000359373		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000495878		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000455638		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000393605		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000334211		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000393609		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000426523		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000355630	ENST00000429686		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-3CDS	ENST00000396617	ENST00000359373		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000495878		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000455638		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000393605		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000334211		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000393609		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000426523		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000396617	ENST00000429686		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-3CDS	ENST00000402042	ENST00000359373		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000495878		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000455638		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000393605		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000334211		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000393609		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000426523		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000402042	ENST00000429686		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-3CDS	ENST00000466278	ENST00000359373		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000495878		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000455638		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000393605		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000334211		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000393609		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000426523		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
5UTR-intron	ENST00000466278	ENST00000429686		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-3CDS	ENST00000407029	ENST00000359373		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000495878		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000455638		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000393605		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000334211		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000393609		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000426523		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000407029	ENST00000429686		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-3CDS	ENST00000402630	ENST00000359373		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000495878		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000455638		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000393605		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000334211		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000393609		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000426523		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
intron-intron	ENST00000402630	ENST00000429686		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	41032482	-	ARAP1	chr11	72414124	-
Frame-shit	ENST00000421797	ENST00000393232		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000421797	ENST00000353868		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000421797	ENST00000539636		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000421797	ENST00000311967		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000421797	ENST00000223190		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000421797	ENST00000393230		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000421797	ENST00000393231		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
5CDS-intron	ENST00000421797	ENST00000477428		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000393232		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000353868		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000539636		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000311967		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000223190		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000393230		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000429546	ENST00000393231		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-intron	ENST00000429546	ENST00000477428		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000393232		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000353868		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000539636		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000311967		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000223190		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000393230		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
Frame-shit	ENST00000352689	ENST00000393231		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
5CDS-intron	ENST00000352689	ENST00000477428		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000393232		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000353868		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000539636		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000311967		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000223190		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000393230		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-3CDS	ENST00000498778	ENST00000393231		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
intron-intron	ENST00000498778	ENST00000477428		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MKLN1	chr7	131122756	+	NRF1	chr7	129367081	+
In-frame	ENST00000310614	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000310614	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
In-frame	ENST00000535529	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000535529	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5UTR-3CDS	ENST00000411840	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5UTR-5UTR	ENST00000411840	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5UTR-3CDS	ENST00000398483	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5UTR-5UTR	ENST00000398483	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
In-frame	ENST00000542303	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000542303	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
intron-3CDS	ENST00000314282	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
intron-5UTR	ENST00000314282	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	MRPL48	chr11	73536841	+	NARS2	chr11	78239982	-
5CDS-intron	ENST00000595618	ENST00000586702		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000595618	ENST00000294618		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000595618	ENST00000319867		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000594824	ENST00000586702		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000594824	ENST00000294618		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000594824	ENST00000319867		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000397274	ENST00000586702		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000397274	ENST00000294618		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5CDS-intron	ENST00000397274	ENST00000319867		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
3UTR-intron	ENST00000593411	ENST00000586702		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
3UTR-intron	ENST00000593411	ENST00000294618		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
3UTR-intron	ENST00000593411	ENST00000319867		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYO9B	chr19	17213367	+	DOCK6	chr19	11364402	-
5UTR-3CDS	ENST00000359242	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000359242	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000359242	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-3CDS	ENST00000370567	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000370567	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000370567	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-3CDS	ENST00000394731	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000394731	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000394731	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-3CDS	ENST00000317336	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000317336	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000317336	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-3CDS	ENST00000370566	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000370566	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000370566	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-3CDS	ENST00000294678	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000294678	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000294678	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
intron-3CDS	ENST00000524695	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
intron-intron	ENST00000524695	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
intron-intron	ENST00000524695	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-3CDS	ENST00000478286	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000478286	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
5UTR-intron	ENST00000478286	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
intron-3CDS	ENST00000486215	ENST00000360256		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
intron-intron	ENST00000486215	ENST00000330287		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
intron-intron	ENST00000486215	ENST00000483822		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ODF2L	chr1	86861716	-	F8	chrX	154159951	-
Frame-shit	ENST00000541478	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000541478	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000541478	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000535715	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000535715	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000535715	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000422031	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000422031	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000422031	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000428192	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000428192	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000428192	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000538426	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000538426	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000538426	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000543004	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
Frame-shit	ENST00000543004	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5CDS-intron	ENST00000543004	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-3CDS	ENST00000536443	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-3CDS	ENST00000536443	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
3UTR-intron	ENST00000536443	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-3CDS	ENST00000543988	ENST00000398309		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-3CDS	ENST00000543988	ENST00000376104		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000418306		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000280241		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000543673		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000376106		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000330014		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000537455		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000524982		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000532653		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000531015		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000398301		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000426717		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000404783		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000398304		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000530800		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
intron-intron	ENST00000543988	ENST00000472545		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	OTUB1	chr11	63753986	+	DLG2	chr11	84245774	-
5UTR-3CDS	ENST00000315596	ENST00000381655		TCGA	RV	SKCM	TCGA-ER-A42L-06A	PDS5B	chr13	33160730	+	ATP8A2	chr13	26402256	+
5UTR-intron	ENST00000315596	ENST00000255283		TCGA	RV	SKCM	TCGA-ER-A42L-06A	PDS5B	chr13	33160730	+	ATP8A2	chr13	26402256	+
5UTR-3UTR	ENST00000315596	ENST00000491840		TCGA	RV	SKCM	TCGA-ER-A42L-06A	PDS5B	chr13	33160730	+	ATP8A2	chr13	26402256	+
5CDS-intron	ENST00000356763	ENST00000477496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000460856		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000240874		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000360013		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000393496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000291478		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000428018		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000459915		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
5CDS-intron	ENST00000356763	ENST00000462213		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000477496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000460856		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000240874		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000360013		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000393496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000291478		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000428018		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000459915		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
intron-intron	ENST00000512677	ENST00000462213		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PIK3R4	chr3	130463330	-	KALRN	chr3	124113982	+
3UTR-3CDS	ENST00000304979	ENST00000428554		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-3CDS	ENST00000304979	ENST00000507855		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000304979	ENST00000475614		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000304979	ENST00000342022		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000304979	ENST00000340612		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000304979	ENST00000390640		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
In-frame	ENST00000372550	ENST00000428554		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
In-frame	ENST00000372550	ENST00000507855		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
5CDS-intron	ENST00000372550	ENST00000475614		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
5CDS-intron	ENST00000372550	ENST00000342022		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
5CDS-intron	ENST00000372550	ENST00000340612		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
5CDS-intron	ENST00000372550	ENST00000390640		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
intron-3CDS	ENST00000372549	ENST00000428554		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
intron-3CDS	ENST00000372549	ENST00000507855		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
intron-intron	ENST00000372549	ENST00000475614		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
intron-intron	ENST00000372549	ENST00000342022		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
intron-intron	ENST00000372549	ENST00000340612		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
intron-intron	ENST00000372549	ENST00000390640		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-3CDS	ENST00000455203	ENST00000428554		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-3CDS	ENST00000455203	ENST00000507855		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000455203	ENST00000475614		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000455203	ENST00000342022		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000455203	ENST00000340612		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
3UTR-intron	ENST00000455203	ENST00000390640		TCGA	RV	SKCM	TCGA-YD-A9TA-06A	PPIH	chr1	43133111	+	CCDC30	chr1	43047031	+
In-frame	ENST00000313010	ENST00000398309		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000313010	ENST00000376104		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000313010	ENST00000418306		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000313010	ENST00000280241		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000313010	ENST00000543673		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000376106		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000330014		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000537455		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000524982		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000532653		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000531015		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000313010	ENST00000398301		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000313010	ENST00000426717		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000313010	ENST00000404783		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000313010	ENST00000398304		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000313010	ENST00000530800		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000313010	ENST00000472545		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000393399	ENST00000398309		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000393399	ENST00000376104		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000393399	ENST00000418306		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000393399	ENST00000280241		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000393399	ENST00000543673		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000376106		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000330014		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000537455		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000524982		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000532653		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000531015		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000393399	ENST00000398301		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000393399	ENST00000426717		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000393399	ENST00000404783		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000393399	ENST00000398304		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000393399	ENST00000530800		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000393399	ENST00000472545		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
Frame-shit	ENST00000535099	ENST00000398309		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
Frame-shit	ENST00000535099	ENST00000376104		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
Frame-shit	ENST00000535099	ENST00000418306		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
Frame-shit	ENST00000535099	ENST00000280241		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
Frame-shit	ENST00000535099	ENST00000543673		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000376106		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000330014		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000537455		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000524982		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000532653		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000531015		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-5UTR	ENST00000535099	ENST00000398301		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000535099	ENST00000426717		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000535099	ENST00000404783		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000535099	ENST00000398304		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000535099	ENST00000530800		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
5CDS-intron	ENST00000535099	ENST00000472545		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-3CDS	ENST00000525772	ENST00000398309		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-3CDS	ENST00000525772	ENST00000376104		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-3CDS	ENST00000525772	ENST00000418306		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-3CDS	ENST00000525772	ENST00000280241		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-3CDS	ENST00000525772	ENST00000543673		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000376106		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000330014		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000537455		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000524982		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000532653		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000531015		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-5UTR	ENST00000525772	ENST00000398301		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-intron	ENST00000525772	ENST00000426717		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-intron	ENST00000525772	ENST00000404783		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-intron	ENST00000525772	ENST00000398304		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-intron	ENST00000525772	ENST00000530800		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
intron-intron	ENST00000525772	ENST00000472545		TCGA	RV	SKCM	TCGA-FS-A1ZS-06A	PRCP	chr11	82564219	-	DLG2	chr11	83810090	-
In-frame	ENST00000424085	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000424085	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000424085	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000257075	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000257075	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000257075	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000373747	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000373747	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000373747	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000426105	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000426105	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000426105	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000440538	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000440538	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000440538	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000373741	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000373741	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000373741	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000423018	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000423018	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
In-frame	ENST00000423018	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000373742	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000373742	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000373742	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
intron-3CDS	ENST00000490546	ENST00000370551		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
intron-3CDS	ENST00000490546	ENST00000370550		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
intron-3CDS	ENST00000490546	ENST00000356813		TCGA	RV	SKCM	TCGA-EB-A82C-01A	PUM1	chr1	31532051	-	HS2ST1	chr1	87538617	+
Frame-shit	ENST00000356297	ENST00000307179		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
Frame-shit	ENST00000356297	ENST00000433963		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
Frame-shit	ENST00000356297	ENST00000396444		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
Frame-shit	ENST00000356297	ENST00000425032		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
5CDS-intron	ENST00000356297	ENST00000558892		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000307179		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000433963		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000396444		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000425032		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-intron	ENST00000543296	ENST00000558892		TCGA	RV	SKCM	TCGA-ER-A19T-06A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
5CDS-intron	ENST00000382038	ENST00000282469		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000382038	ENST00000509059		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000382038	ENST00000356031		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000382038	ENST00000440995		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000382038	ENST00000303129		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000341754	ENST00000282469		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000341754	ENST00000509059		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000341754	ENST00000356031		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000341754	ENST00000440995		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-intron	ENST00000341754	ENST00000303129		TCGA	RV	SKCM	TCGA-EB-A82C-01A	RAD1	chr5	34914800	-	SPEF2	chr5	35691139	+
5CDS-5UTR	ENST00000361756	ENST00000450904		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000361756	ENST00000362034		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000361756	ENST00000567045		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000533380	ENST00000450904		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000533380	ENST00000362034		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000533380	ENST00000567045		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000393713	ENST00000450904		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000393713	ENST00000362034		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000393713	ENST00000567045		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
3UTR-5UTR	ENST00000490867	ENST00000450904		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
3UTR-5UTR	ENST00000490867	ENST00000362034		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
3UTR-5UTR	ENST00000490867	ENST00000567045		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5UTR-5UTR	ENST00000545854	ENST00000450904		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5UTR-5UTR	ENST00000545854	ENST00000362034		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5UTR-5UTR	ENST00000545854	ENST00000567045		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000530137	ENST00000450904		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000530137	ENST00000362034		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
5CDS-5UTR	ENST00000530137	ENST00000567045		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	RNF121	chr11	71671937	+	MRPL21	chr11	68668073	-
Frame-shit	ENST00000370656	ENST00000370689		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370656	ENST00000370685		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370656	ENST00000394838		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370656	ENST00000370682		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370656	ENST00000394839		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
5CDS-intron	ENST00000370656	ENST00000370688		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
5CDS-intron	ENST00000370656	ENST00000470673		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
5CDS-intron	ENST00000370656	ENST00000370680		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370654	ENST00000370689		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370654	ENST00000370685		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370654	ENST00000394838		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370654	ENST00000370682		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000370654	ENST00000394839		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
5CDS-intron	ENST00000370654	ENST00000370688		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
5CDS-intron	ENST00000370654	ENST00000470673		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
5CDS-intron	ENST00000370654	ENST00000370680		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	RPF1	chr1	84945192	+	PRKACB	chr1	84700863	+
Frame-shit	ENST00000445193	ENST00000478253		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
Frame-shit	ENST00000445193	ENST00000295962		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
5CDS-intron	ENST00000445193	ENST00000480457		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
3UTR-3CDS	ENST00000477305	ENST00000478253		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
3UTR-3CDS	ENST00000477305	ENST00000295962		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
3UTR-intron	ENST00000477305	ENST00000480457		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
Frame-shit	ENST00000295959	ENST00000478253		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
Frame-shit	ENST00000295959	ENST00000295962		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
5CDS-intron	ENST00000295959	ENST00000480457		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
Frame-shit	ENST00000466547	ENST00000478253		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
Frame-shit	ENST00000466547	ENST00000295962		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
5CDS-intron	ENST00000466547	ENST00000480457		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
intron-3CDS	ENST00000528153	ENST00000478253		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
intron-3CDS	ENST00000528153	ENST00000295962		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
intron-intron	ENST00000528153	ENST00000480457		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	RPP14	chr3	58296318	+	ABHD6	chr3	58252916	+
Frame-shit	ENST00000359842	ENST00000354422		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RXRG	chr1	165386278	-	FAM78B	chr1	166040000	-
Frame-shit	ENST00000359842	ENST00000338353		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RXRG	chr1	165386278	-	FAM78B	chr1	166040000	-
5UTR-3CDS	ENST00000470566	ENST00000354422		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RXRG	chr1	165386278	-	FAM78B	chr1	166040000	-
5UTR-3CDS	ENST00000470566	ENST00000338353		TCGA	RV	SKCM	TCGA-EE-A2ML-06A	RXRG	chr1	165386278	-	FAM78B	chr1	166040000	-
5CDS-intron	ENST00000367071	ENST00000550703		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000367071	ENST00000551590		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000367071	ENST00000397655		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000367071	ENST00000471804		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000367071	ENST00000377654		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000367071	ENST00000397659		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000367071	ENST00000551555		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000550703		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000551590		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000397655		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000471804		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000377654		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000397659		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
5CDS-intron	ENST00000291700	ENST00000551555		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000550703		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000551590		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000397655		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000471804		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000377654		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000397659		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
intron-intron	ENST00000397648	ENST00000551555		TCGA	RV	SKCM	TCGA-GN-A263-01A	S100B	chr21	48018875	-	TCTN1	chr12	111082513	+
In-frame	ENST00000265965	ENST00000265969		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
Frame-shit	ENST00000265965	ENST00000379472		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
5CDS-intron	ENST00000265965	ENST00000525802		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-3CDS	ENST00000528200	ENST00000265969		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-3CDS	ENST00000528200	ENST00000379472		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-intron	ENST00000528200	ENST00000525802		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-3CDS	ENST00000532265	ENST00000265969		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-3CDS	ENST00000532265	ENST00000379472		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-intron	ENST00000532265	ENST00000525802		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-3CDS	ENST00000532212	ENST00000265969		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-3CDS	ENST00000532212	ENST00000379472		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
intron-intron	ENST00000532212	ENST00000525802		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SERGEF	chr11	17981017	-	KCNC1	chr11	17793212	+
5UTR-3CDS	ENST00000394752	ENST00000295874		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000394752	ENST00000474889		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-intron	ENST00000394752	ENST00000495879		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000394750	ENST00000295874		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000394750	ENST00000474889		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000394750	ENST00000495879		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000358080	ENST00000295874		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000358080	ENST00000474889		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-intron	ENST00000358080	ENST00000495879		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000296295	ENST00000295874		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-3CDS	ENST00000296295	ENST00000474889		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
5UTR-intron	ENST00000296295	ENST00000495879		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000470575	ENST00000295874		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000470575	ENST00000474889		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000470575	ENST00000495879		TCGA	RV	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53079832	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000368445	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000368445	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000368445	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368445	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368445	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368445	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368445	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000368449	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000368449	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000368449	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368449	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368449	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368449	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000368449	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000448116	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000448116	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000448116	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000448116	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000448116	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000448116	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000448116	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000368450	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000368450	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000368450	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368450	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368450	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368450	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368450	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000368453	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000368453	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000368453	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368453	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368453	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368453	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-intron	ENST00000368453	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000606391	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000606391	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000606391	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000606391	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000606391	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000606391	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000606391	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000490667	ENST00000441917		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000490667	ENST00000541887		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-3CDS	ENST00000490667	ENST00000261819		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000490667	ENST00000535482		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000490667	ENST00000544314		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000490667	ENST00000344395		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
intron-intron	ENST00000490667	ENST00000536366		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	SHC1	chr1	154946724	-	ANAPC5	chr12	121779872	-
5UTR-3CDS	ENST00000318596	ENST00000358026		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000344626		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000429416		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000541122		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000589677		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000444061		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000590574		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000413806		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-3CDS	ENST00000318596	ENST00000450717		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
5UTR-intron	ENST00000318596	ENST00000538456		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000358026		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000344626		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000429416		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000541122		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000589677		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000444061		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000590574		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000413806		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000600275	ENST00000450717		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-intron	ENST00000600275	ENST00000538456		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SLC25A42	chr19	19174924	+	SMARCA4	chr19	11123625	+
intron-3CDS	ENST00000398454	ENST00000342382		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000398454	ENST00000303525		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000398454	ENST00000382021		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000398454	ENST00000512136		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000359874	ENST00000342382		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000359874	ENST00000303525		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000359874	ENST00000382021		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000359874	ENST00000512136		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000256084	ENST00000342382		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000256084	ENST00000303525		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000256084	ENST00000382021		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
In-frame	ENST00000256084	ENST00000512136		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000476608	ENST00000342382		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000476608	ENST00000303525		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000476608	ENST00000382021		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
intron-3CDS	ENST00000476608	ENST00000512136		TCGA	RV	SKCM	TCGA-D3-A51N-06A	SPINK5	chr5	147505413	+	DNAJC21	chr5	34945866	+
Frame-shit	ENST00000337137	ENST00000263245		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000337137	ENST00000429508		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000337137	ENST00000437119		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
5UTR-3CDS	ENST00000380995	ENST00000263245		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
5UTR-3CDS	ENST00000380995	ENST00000429508		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
5UTR-3CDS	ENST00000380995	ENST00000437119		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000407381	ENST00000263245		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000407381	ENST00000429508		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000407381	ENST00000437119		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000355704	ENST00000263245		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000355704	ENST00000429508		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000355704	ENST00000437119		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000472791	ENST00000263245		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000472791	ENST00000429508		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000472791	ENST00000437119		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000406733	ENST00000263245		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000406733	ENST00000429508		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000406733	ENST00000437119		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	TBC1D22A	chr22	47158745	+	ARFGAP3	chr22	43195166	-
In-frame	ENST00000266712	ENST00000262056		TCGA	RV	SKCM	TCGA-EE-A29D-06A	TMTC3	chr12	88570096	+	EIF4B	chr12	53410257	+
5CDS-3UTR	ENST00000266712	ENST00000551527		TCGA	RV	SKCM	TCGA-EE-A29D-06A	TMTC3	chr12	88570096	+	EIF4B	chr12	53410257	+
5CDS-3UTR	ENST00000266712	ENST00000420463		TCGA	RV	SKCM	TCGA-EE-A29D-06A	TMTC3	chr12	88570096	+	EIF4B	chr12	53410257	+
5CDS-3UTR	ENST00000266712	ENST00000416762		TCGA	RV	SKCM	TCGA-EE-A29D-06A	TMTC3	chr12	88570096	+	EIF4B	chr12	53410257	+
Frame-shit	ENST00000344204	ENST00000339561		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
Frame-shit	ENST00000344204	ENST00000185206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
Frame-shit	ENST00000344204	ENST00000544153		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
5CDS-intron	ENST00000344204	ENST00000486570		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
Frame-shit	ENST00000537187	ENST00000339561		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
Frame-shit	ENST00000537187	ENST00000185206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
Frame-shit	ENST00000537187	ENST00000544153		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
5CDS-intron	ENST00000537187	ENST00000486570		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000509967	ENST00000339561		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000509967	ENST00000185206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000509967	ENST00000544153		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-intron	ENST00000509967	ENST00000486570		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000515710	ENST00000339561		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000515710	ENST00000185206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000515710	ENST00000544153		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-intron	ENST00000515710	ENST00000486570		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000344135	ENST00000339561		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000344135	ENST00000185206		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-3CDS	ENST00000344135	ENST00000544153		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
intron-intron	ENST00000344135	ENST00000486570		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14420130	+	CLIC5	chr6	45922981	-
5UTR-5UTR	ENST00000283943	ENST00000338483		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-intron	ENST00000283943	ENST00000538999		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000283943	ENST00000538320		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000283943	ENST00000426621		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000283943	ENST00000407965		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389045	ENST00000338483		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-intron	ENST00000389045	ENST00000538999		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389045	ENST00000538320		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389045	ENST00000426621		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389045	ENST00000407965		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389044	ENST00000338483		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-intron	ENST00000389044	ENST00000538999		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389044	ENST00000538320		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389044	ENST00000426621		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000389044	ENST00000407965		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000543084	ENST00000338483		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-intron	ENST00000543084	ENST00000538999		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000543084	ENST00000538320		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000543084	ENST00000426621		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000543084	ENST00000407965		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000409677	ENST00000338483		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-intron	ENST00000409677	ENST00000538999		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000409677	ENST00000538320		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000409677	ENST00000426621		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
5UTR-5UTR	ENST00000409677	ENST00000407965		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TRIP12	chr2	230786596	-	MAFF	chr22	38609830	+
intron-3CDS	ENST00000544301	ENST00000521198		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000544301	ENST00000522398		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000544301	ENST00000520976		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000544301	ENST00000396596		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000544301	ENST00000345714		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-intron	ENST00000544301	ENST00000521435		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
Frame-shit	ENST00000224237	ENST00000521198		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
Frame-shit	ENST00000224237	ENST00000522398		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
Frame-shit	ENST00000224237	ENST00000520976		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
Frame-shit	ENST00000224237	ENST00000396596		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
Frame-shit	ENST00000224237	ENST00000345714		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
5CDS-intron	ENST00000224237	ENST00000521435		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000485947	ENST00000521198		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000485947	ENST00000522398		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000485947	ENST00000520976		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000485947	ENST00000396596		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-3CDS	ENST00000485947	ENST00000345714		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
intron-intron	ENST00000485947	ENST00000521435		TCGA	RV	SKCM	TCGA-EE-A2MF-06A	VIM	chr10	17279592	+	SGK3	chr8	67716610	+
Frame-shit	ENST00000342483	ENST00000373371		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-5UTR	ENST00000342483	ENST00000373352		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-5UTR	ENST00000342483	ENST00000373360		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-intron	ENST00000342483	ENST00000485806		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
Frame-shit	ENST00000543471	ENST00000373371		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-5UTR	ENST00000543471	ENST00000373352		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-5UTR	ENST00000543471	ENST00000373360		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-intron	ENST00000543471	ENST00000485806		TCGA	RV	SKCM	TCGA-ER-A19L-06A	ZNF79	chr9	130198282	+	SLC2A8	chr9	130162186	+
5CDS-5UTR	ENST00000264607	ENST00000392011		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
5CDS-5UTR	ENST00000264607	ENST00000409212		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
5CDS-intron	ENST00000264607	ENST00000344528		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
5CDS-intron	ENST00000264607	ENST00000489601		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-5UTR	ENST00000469885	ENST00000392011		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-5UTR	ENST00000469885	ENST00000409212		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-intron	ENST00000469885	ENST00000344528		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-intron	ENST00000469885	ENST00000489601		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-5UTR	ENST00000409297	ENST00000392011		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-5UTR	ENST00000409297	ENST00000409212		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-intron	ENST00000409297	ENST00000344528		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
intron-intron	ENST00000409297	ENST00000489601		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344654	+	SH3BP4	chr2	235943515	+
Frame-shit	ENST00000373996	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000373996	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000313400	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000313400	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000361209	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000361209	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000361477	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000361477	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000288520	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
Frame-shit	ENST00000288520	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000341734	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000341734	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000358637	ENST00000374530		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
In-frame	ENST00000358637	ENST00000302798		TCGA	RV	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	PALM2-AKAP2	chr9	112898407	+
5UTR-intron	ENST00000337198	ENST00000518857		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-5UTR	ENST00000337198	ENST00000395862		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-intron	ENST00000337198	ENST00000521514		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-5UTR	ENST00000337198	ENST00000518738		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-intron	ENST00000347770	ENST00000518857		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-5UTR	ENST00000347770	ENST00000395862		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-intron	ENST00000347770	ENST00000521514		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-5UTR	ENST00000347770	ENST00000518738		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-intron	ENST00000522311	ENST00000518857		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-5UTR	ENST00000522311	ENST00000395862		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-intron	ENST00000522311	ENST00000521514		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
5UTR-5UTR	ENST00000522311	ENST00000518738		TCGA	RV	SKCM	TCGA-BF-A1PX-01A	AZIN1	chr8	103870241	-	ATP6V1C1	chr8	104053026	+
Frame-shit	ENST00000334126	ENST00000393958		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000334126	ENST00000393960		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000334126	ENST00000355677		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000334126	ENST00000524491		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000334126	ENST00000529047		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000334126	ENST00000393955		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000334126	ENST00000528224		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000313663	ENST00000393958		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000313663	ENST00000393960		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000313663	ENST00000355677		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000313663	ENST00000524491		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000313663	ENST00000529047		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000313663	ENST00000393955		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000313663	ENST00000528224		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-3CDS	ENST00000542452	ENST00000393958		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-3CDS	ENST00000542452	ENST00000393960		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-3CDS	ENST00000542452	ENST00000355677		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-5UTR	ENST00000542452	ENST00000524491		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-intron	ENST00000542452	ENST00000529047		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-intron	ENST00000542452	ENST00000393955		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
intron-intron	ENST00000542452	ENST00000528224		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000539061	ENST00000393958		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000539061	ENST00000393960		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
Frame-shit	ENST00000539061	ENST00000355677		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000539061	ENST00000524491		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000539061	ENST00000529047		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000539061	ENST00000393955		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
5CDS-intron	ENST00000539061	ENST00000528224		TCGA	RV	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73879389	-	PC	chr11	66639630	-
In-frame	ENST00000403006	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000403006	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000403006	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000403006	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000403006	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000381090	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000381090	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000381090	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000381090	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000237822	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000237822	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000237822	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000237822	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
Frame-shit	ENST00000435420	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000435420	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000435420	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000435420	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000440866	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-intron	ENST00000440866	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-intron	ENST00000440866	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-intron	ENST00000440866	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
In-frame	ENST00000541941	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000541941	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000541941	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-intron	ENST00000541941	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000394609		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000405240		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000357376		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000317610		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000357732		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000337526		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000394611		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-3CDS	ENST00000419825	ENST00000404909		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-intron	ENST00000419825	ENST00000486085		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-intron	ENST00000419825	ENST00000354474		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
intron-intron	ENST00000419825	ENST00000402434		TCGA	RV	SKCM	TCGA-EB-A3XC-01A	C2orf43	chr2	20939731	-	RTN4	chr2	55214834	-
5CDS-3UTR	ENST00000423994	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000429770	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000435965	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000266039	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000395083	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000360963	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000424201	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000479441	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5UTR-3UTR	ENST00000487413	ENST00000281030		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CACNA2D2	chr3	50540649	-	THRSP	chr11	77778705	+
5CDS-5UTR	ENST00000263921	ENST00000222345		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	CHIC2	chr4	54915122	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000263921	ENST00000476317		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	CHIC2	chr4	54915122	-	SIPA1L3	chr19	38519729	+
5CDS-5UTR	ENST00000512964	ENST00000222345		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	CHIC2	chr4	54915122	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000512964	ENST00000476317		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	CHIC2	chr4	54915122	-	SIPA1L3	chr19	38519729	+
Frame-shit	ENST00000367160	ENST00000288602		TCGA	RV	SKCM	TCGA-EB-A97M-01A	DSTYK	chr1	205180399	-	BRAF	chr7	140482957	-
Frame-shit	ENST00000367161	ENST00000288602		TCGA	RV	SKCM	TCGA-EB-A97M-01A	DSTYK	chr1	205180399	-	BRAF	chr7	140482957	-
Frame-shit	ENST00000367162	ENST00000288602		TCGA	RV	SKCM	TCGA-EB-A97M-01A	DSTYK	chr1	205180399	-	BRAF	chr7	140482957	-
5CDS-3UTR	ENST00000415912	ENST00000486277		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-5UTR	ENST00000415912	ENST00000375108		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
intron-3UTR	ENST00000357071	ENST00000486277		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
intron-5UTR	ENST00000357071	ENST00000375108		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-3UTR	ENST00000374893	ENST00000486277		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-5UTR	ENST00000374893	ENST00000375108		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-3UTR	ENST00000436918	ENST00000486277		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-5UTR	ENST00000436918	ENST00000375108		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-3UTR	ENST00000264205	ENST00000486277		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
5CDS-5UTR	ENST00000264205	ENST00000375108		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
intron-3UTR	ENST00000528294	ENST00000486277		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
intron-5UTR	ENST00000528294	ENST00000375108		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	ECE1	chr1	21616563	-	PLA2G5	chr1	20411314	+
In-frame	ENST00000356093	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000356093	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000356093	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000356093	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000356093	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000356093	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000356093	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000356093	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000398863	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000398863	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000398863	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000398863	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000398863	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000398863	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000398863	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000398863	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000343067	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000343067	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000343067	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000343067	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000343067	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000343067	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000343067	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000343067	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000349460	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000349460	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000349460	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000349460	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000349460	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000349460	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000349460	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000349460	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373800	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373800	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373800	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373800	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373800	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-intron	ENST00000373800	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-intron	ENST00000373800	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-intron	ENST00000373800	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000347529	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000347529	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000347529	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000347529	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000347529	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000347529	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000347529	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000347529	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000373798	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000373798	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000373798	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000373798	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
In-frame	ENST00000373798	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000373798	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000373798	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
5CDS-intron	ENST00000373798	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373797	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373797	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373797	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373797	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-3CDS	ENST00000373797	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-intron	ENST00000373797	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-intron	ENST00000373797	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
intron-intron	ENST00000373797	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-3CDS	ENST00000460378	ENST00000302640		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-3CDS	ENST00000460378	ENST00000354582		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-3CDS	ENST00000460378	ENST00000423119		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-3CDS	ENST00000460378	ENST00000456211		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-3CDS	ENST00000460378	ENST00000357086		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-intron	ENST00000460378	ENST00000544951		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-intron	ENST00000460378	ENST00000443694		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
3UTR-intron	ENST00000460378	ENST00000463980		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	EPB41	chr1	29435949	+	ITPR1	chr3	4774772	+
Frame-shit	ENST00000306320	ENST00000308624		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
Frame-shit	ENST00000306320	ENST00000407292		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
5CDS-intron	ENST00000306320	ENST00000467759		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
intron-3CDS	ENST00000399793	ENST00000308624		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
intron-3CDS	ENST00000399793	ENST00000407292		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
intron-intron	ENST00000399793	ENST00000467759		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
intron-3CDS	ENST00000509048	ENST00000308624		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
intron-3CDS	ENST00000509048	ENST00000407292		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
intron-intron	ENST00000509048	ENST00000467759		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FAM134B	chr5	16565872	-	SNTG2	chr2	1312266	+
In-frame	ENST00000552912	ENST00000550916		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-intron	ENST00000552912	ENST00000378689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-intron	ENST00000552912	ENST00000435775		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000552912	ENST00000378692		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000552912	ENST00000320460		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000552912	ENST00000547164		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000552912	ENST00000441218		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
In-frame	ENST00000242591	ENST00000550916		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-intron	ENST00000242591	ENST00000378689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-intron	ENST00000242591	ENST00000435775		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000242591	ENST00000378692		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000242591	ENST00000320460		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000242591	ENST00000547164		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-5UTR	ENST00000242591	ENST00000441218		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-3CDS	ENST00000361948	ENST00000550916		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-intron	ENST00000361948	ENST00000378689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-intron	ENST00000361948	ENST00000435775		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000361948	ENST00000378692		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000361948	ENST00000320460		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000361948	ENST00000547164		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000361948	ENST00000441218		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-3CDS	ENST00000549009	ENST00000550916		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-intron	ENST00000549009	ENST00000378689		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-intron	ENST00000549009	ENST00000435775		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000549009	ENST00000378692		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000549009	ENST00000320460		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000549009	ENST00000547164		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
intron-5UTR	ENST00000549009	ENST00000441218		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	IFT81	chr12	110618376	+	GLIPR1L2	chr12	75804214	+
5CDS-intron	ENST00000374864	ENST00000485807		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000374864	ENST00000366758		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000374864	ENST00000438896		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000535650	ENST00000485807		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000535650	ENST00000366758		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000535650	ENST00000438896		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000262650	ENST00000485807		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000262650	ENST00000366758		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
5CDS-intron	ENST00000262650	ENST00000438896		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
3UTR-intron	ENST00000483727	ENST00000485807		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
3UTR-intron	ENST00000483727	ENST00000366758		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
3UTR-intron	ENST00000483727	ENST00000438896		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	ITCH	chr20	33033266	+	JMJD4	chr1	227922517	-
In-frame	ENST00000553277	ENST00000379391		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000553277	ENST00000300128		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
5CDS-5UTR	ENST00000553277	ENST00000553654		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000243077	ENST00000379391		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000243077	ENST00000300128		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
5CDS-5UTR	ENST00000243077	ENST00000553654		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000338962	ENST00000379391		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000338962	ENST00000300128		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
5CDS-5UTR	ENST00000338962	ENST00000553654		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000554174	ENST00000379391		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
In-frame	ENST00000554174	ENST00000300128		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
5CDS-5UTR	ENST00000554174	ENST00000553654		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
intron-3CDS	ENST00000553446	ENST00000379391		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
intron-3CDS	ENST00000553446	ENST00000300128		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
intron-5UTR	ENST00000553446	ENST00000553654		TCGA	RV	SKCM	TCGA-GF-A769-01A	LRP1	chr12	57537581	+	TMEM194A	chr12	57466695	-
Frame-shit	ENST00000352241	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000352241	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000448226	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000448226	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000472437	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000472437	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000328528	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000328528	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000314589	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000314589	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000394355	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000394355	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000314557	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000314557	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000394351	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000394351	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000531774	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000531774	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000394348	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000394348	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000395811	ENST00000307116		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395811	ENST00000373008		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395811	ENST00000263556		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395811	ENST00000412021		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395811	ENST00000440381		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395811	ENST00000394890		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000444976	ENST00000307116		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000444976	ENST00000373008		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000444976	ENST00000263556		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000444976	ENST00000412021		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000444976	ENST00000440381		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000444976	ENST00000394890		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395804	ENST00000307116		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395804	ENST00000373008		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395804	ENST00000263556		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395804	ENST00000412021		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395804	ENST00000440381		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395804	ENST00000394890		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000341712	ENST00000307116		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000341712	ENST00000373008		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000341712	ENST00000263556		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000341712	ENST00000412021		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000341712	ENST00000440381		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000341712	ENST00000394890		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395806	ENST00000307116		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395806	ENST00000373008		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395806	ENST00000263556		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395806	ENST00000412021		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395806	ENST00000440381		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
Frame-shit	ENST00000395806	ENST00000394890		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
3UTR-3CDS	ENST00000395807	ENST00000307116		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
3UTR-3CDS	ENST00000395807	ENST00000373008		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
3UTR-3CDS	ENST00000395807	ENST00000263556		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
3UTR-3CDS	ENST00000395807	ENST00000412021		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
3UTR-3CDS	ENST00000395807	ENST00000440381		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
3UTR-3CDS	ENST00000395807	ENST00000394890		TCGA	RV	SKCM	TCGA-FW-A3TU-06A	MPRIP	chr17	16946285	+	P4HA1	chr10	74790128	-
In-frame	ENST00000399231	ENST00000326840		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
In-frame	ENST00000399231	ENST00000326857		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
5CDS-intron	ENST00000399231	ENST00000469648		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
In-frame	ENST00000356338	ENST00000326840		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
In-frame	ENST00000356338	ENST00000326857		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
5CDS-intron	ENST00000356338	ENST00000469648		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
Frame-shit	ENST00000358212	ENST00000326840		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
Frame-shit	ENST00000358212	ENST00000326857		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
5CDS-intron	ENST00000358212	ENST00000469648		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
Frame-shit	ENST00000399233	ENST00000326840		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
Frame-shit	ENST00000399233	ENST00000326857		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
5CDS-intron	ENST00000399233	ENST00000469648		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
intron-3CDS	ENST00000553916	ENST00000326840		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
intron-3CDS	ENST00000553916	ENST00000326857		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
intron-intron	ENST00000553916	ENST00000469648		TCGA	RV	SKCM	TCGA-D9-A149-06A	MYO5A	chr15	52599483	-	DCBLD2	chr3	98520493	-
intron-5UTR	ENST00000523767	ENST00000351797		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000523767	ENST00000522858		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000523767	ENST00000520667		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-intron	ENST00000523767	ENST00000518946		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000523767	ENST00000520313		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000351797		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000522858		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000520667		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-intron	ENST00000261797	ENST00000518946		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000520313		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000351797		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000522858		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000520667		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-intron	ENST00000521752	ENST00000518946		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000520313		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865566	+	FAM114A2	chr5	153414527	-
Frame-shit	ENST00000356462	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000356462	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000356462	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000356462	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000356462	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000356462	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000356462	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000356462	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000400345	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000400345	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000400345	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000400345	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000400345	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000400345	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000400345	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000400345	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000589054	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000589054	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000589054	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000589054	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000589054	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000589054	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000589054	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000589054	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256832	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256832	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256832	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256832	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000256832	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000256832	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000256832	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000256832	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000382850	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000382850	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000382850	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000382850	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000382850	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000382850	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000382850	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000382850	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256830	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256830	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256830	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000256830	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000256830	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000256830	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000256830	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000256830	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000588516	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000588516	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000588516	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-3CDS	ENST00000588516	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000588516	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-intron	ENST00000588516	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000588516	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
intron-5UTR	ENST00000588516	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456986	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456986	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456986	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456986	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000456986	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000456986	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000456986	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000456986	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000435432	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000435432	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000435432	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000435432	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000435432	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000435432	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000435432	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000435432	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000357895	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000357895	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000357895	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000357895	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000357895	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000357895	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000357895	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000357895	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000586263	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000586263	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000586263	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000586263	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000586263	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000586263	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000586263	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000586263	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456173	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456173	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456173	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000456173	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000456173	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000456173	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000456173	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000456173	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000431212	ENST00000405709		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000431212	ENST00000331762		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000431212	ENST00000452895		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000431212	ENST00000415362		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000431212	ENST00000447215		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-intron	ENST00000431212	ENST00000437687		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000431212	ENST00000489381		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
5CDS-5UTR	ENST00000431212	ENST00000450877		TCGA	RV	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110303777	-
Frame-shit	ENST00000371564	ENST00000359926		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000371564	ENST00000371015		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000371564	ENST00000395639		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000371564	ENST00000541461		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000371564	ENST00000355648		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000371564	ENST00000395636		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000371564	ENST00000361300		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000359926		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000371015		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000395639		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000541461		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000355648		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000395636		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000396009	ENST00000361300		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000359926		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000371015		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000395639		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000541461		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000355648		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000395636		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609943	ENST00000361300		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000359926		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000371015		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000395639		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000541461		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000355648		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000395636		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000610033	ENST00000361300		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000359926		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000371015		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000395639		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000541461		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000355648		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000395636		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000414705	ENST00000361300		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000359926		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000371015		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000395639		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000541461		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000355648		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000395636		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
Frame-shit	ENST00000609507	ENST00000361300		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	NFATC2	chr20	50048604	-	PHACTR3	chr20	58420244	+
In-frame	ENST00000418988	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
5CDS-intron	ENST00000418988	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
5CDS-intron	ENST00000418988	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
5CDS-intron	ENST00000418988	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-3CDS	ENST00000555531	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000555531	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000555531	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000555531	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-3CDS	ENST00000419365	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000419365	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000419365	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000419365	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-3CDS	ENST00000524606	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000524606	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000524606	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000524606	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-3CDS	ENST00000396394	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000396394	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000396394	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000396394	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-3CDS	ENST00000396393	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000396393	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000396393	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000396393	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-3CDS	ENST00000530457	ENST00000265965		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000530457	ENST00000528200		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000530457	ENST00000532265		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
intron-intron	ENST00000530457	ENST00000532212		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PSMA1	chr11	14632512	-	SERGEF	chr11	17981183	-
Frame-shit	ENST00000344691	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000344691	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000344691	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000344691	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
Frame-shit	ENST00000325074	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000325074	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000325074	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000325074	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
Frame-shit	ENST00000437180	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000437180	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000437180	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000437180	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
Frame-shit	ENST00000300305	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000300305	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000300305	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000300305	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-3CDS	ENST00000399240	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000399240	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000399240	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000399240	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-3CDS	ENST00000486278	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000486278	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000486278	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000486278	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-3CDS	ENST00000494829	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000494829	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000494829	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
intron-intron	ENST00000494829	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
Frame-shit	ENST00000358356	ENST00000416947		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000358356	ENST00000493503		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000358356	ENST00000270139		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
5CDS-intron	ENST00000358356	ENST00000442357		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	RUNX1	chr21	36206707	-	IFNAR1	chr21	34725064	+
3UTR-3CDS	ENST00000550067	ENST00000547776		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-3CDS	ENST00000550067	ENST00000329257		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000547010		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000341752		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000549558		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000550693		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000549025		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000549493		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000547446		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000333732		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000546568		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000332712		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000546960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
3UTR-intron	ENST00000550067	ENST00000550833		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-3CDS	ENST00000360820	ENST00000547776		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-3CDS	ENST00000360820	ENST00000329257		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000547010		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000341752		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000549558		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000550693		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000549025		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000549493		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000547446		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000333732		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000546568		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000332712		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000546960		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000550833		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661174	+	ANKS1B	chr12	100219167	-
Frame-shit	ENST00000367771	ENST00000320895		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000367771	ENST00000507807		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000367771	ENST00000320927		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5CDS-5UTR	ENST00000367771	ENST00000506641		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000367772	ENST00000320895		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000367772	ENST00000507807		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000367772	ENST00000320927		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5CDS-5UTR	ENST00000367772	ENST00000506641		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
In-frame	ENST00000367770	ENST00000320895		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
In-frame	ENST00000367770	ENST00000507807		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
In-frame	ENST00000367770	ENST00000320927		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5CDS-5UTR	ENST00000367770	ENST00000506641		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5UTR-3CDS	ENST00000470238	ENST00000320895		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5UTR-3CDS	ENST00000470238	ENST00000507807		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5UTR-3CDS	ENST00000470238	ENST00000320927		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
5UTR-5UTR	ENST00000470238	ENST00000506641		TCGA	RV	SKCM	TCGA-EE-A20F-06A	SCYL3	chr1	169857817	-	CLPTM1L	chr5	1325931	-
Frame-shit	ENST00000566228	ENST00000331351		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000566228	ENST00000475436		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000323433	ENST00000331351		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000323433	ENST00000475436		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000306030	ENST00000331351		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
5CDS-3UTR	ENST00000306030	ENST00000475436		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
intron-3CDS	ENST00000568359	ENST00000331351		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
intron-3UTR	ENST00000568359	ENST00000475436		TCGA	RV	SKCM	TCGA-EE-A29X-06A	SNX29	chr16	12223615	+	HS3ST4	chr16	26146933	+
Frame-shit	ENST00000308342	ENST00000279230		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	SNX32	chr11	65601572	+	PLCB3	chr11	64033358	+
Frame-shit	ENST00000308342	ENST00000540288		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	SNX32	chr11	65601572	+	PLCB3	chr11	64033358	+
Frame-shit	ENST00000308342	ENST00000325234		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	SNX32	chr11	65601572	+	PLCB3	chr11	64033358	+
intron-3CDS	ENST00000531795	ENST00000279230		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	SNX32	chr11	65601572	+	PLCB3	chr11	64033358	+
intron-3CDS	ENST00000531795	ENST00000540288		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	SNX32	chr11	65601572	+	PLCB3	chr11	64033358	+
intron-3CDS	ENST00000531795	ENST00000325234		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	SNX32	chr11	65601572	+	PLCB3	chr11	64033358	+
5UTR-3CDS	ENST00000508802	ENST00000513024		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000509638		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000508501		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000512946		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000313860		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000512632		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000512820		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000503057		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000511496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000514096		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000509277		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000396595		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000381753		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000509454		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000508802	ENST00000515785		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-3CDS	ENST00000261439	ENST00000513024		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000509638		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000508501		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000512946		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000313860		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000512632		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000512820		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000503057		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000511496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000514096		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000509277		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000396595		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000381753		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000509454		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000261439	ENST00000515785		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-3CDS	ENST00000402522	ENST00000513024		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000509638		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000508501		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000512946		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000313860		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000512632		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000512820		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000503057		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000511496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000514096		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000509277		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000396595		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000381753		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000509454		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
5UTR-intron	ENST00000402522	ENST00000515785		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-3CDS	ENST00000407365	ENST00000513024		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000509638		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000508501		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000512946		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000313860		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000512632		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000512820		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000503057		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000511496		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000514096		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000509277		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000396595		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000381753		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000509454		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
intron-intron	ENST00000407365	ENST00000515785		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	TBC1D1	chr4	37892969	+	LIMCH1	chr4	41652410	+
In-frame	ENST00000162749	ENST00000544484		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000162749	ENST00000357008		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000162749	ENST00000309577		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000162749	ENST00000544040		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
5CDS-intron	ENST00000162749	ENST00000540960		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000540022	ENST00000544484		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000540022	ENST00000357008		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000540022	ENST00000309577		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000540022	ENST00000544040		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
5CDS-intron	ENST00000540022	ENST00000540960		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000366159	ENST00000544484		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000366159	ENST00000357008		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000366159	ENST00000309577		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000366159	ENST00000544040		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
5CDS-intron	ENST00000366159	ENST00000540960		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
intron-3CDS	ENST00000437813	ENST00000544484		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
intron-3CDS	ENST00000437813	ENST00000357008		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
intron-3CDS	ENST00000437813	ENST00000309577		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
intron-3CDS	ENST00000437813	ENST00000544040		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
intron-intron	ENST00000437813	ENST00000540960		TCGA	RV	SKCM	TCGA-D3-A2JN-06A	TNFRSF1A	chr12	6450942	-	CHD4	chr12	6682435	-
In-frame	ENST00000339865	ENST00000545643		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000339865	ENST00000537760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000339865	ENST00000414023		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000339865	ENST00000529237		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000339865	ENST00000256196		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000339865	ENST00000534746		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000339865	ENST00000526063		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000339865	ENST00000532814		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-3CDS	ENST00000539466	ENST00000545643		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-3CDS	ENST00000539466	ENST00000537760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-3CDS	ENST00000539466	ENST00000414023		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-5UTR	ENST00000539466	ENST00000529237		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-5UTR	ENST00000539466	ENST00000256196		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-5UTR	ENST00000539466	ENST00000534746		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-5UTR	ENST00000539466	ENST00000526063		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5UTR-5UTR	ENST00000539466	ENST00000532814		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000527733	ENST00000545643		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000527733	ENST00000537760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000527733	ENST00000414023		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527733	ENST00000529237		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527733	ENST00000256196		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527733	ENST00000534746		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527733	ENST00000526063		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000527733	ENST00000532814		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000399455	ENST00000545643		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000399455	ENST00000537760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
In-frame	ENST00000399455	ENST00000414023		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000399455	ENST00000529237		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000399455	ENST00000256196		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000399455	ENST00000534746		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000399455	ENST00000526063		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-5UTR	ENST00000399455	ENST00000532814		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000305481	ENST00000545643		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000305481	ENST00000537760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-3CDS	ENST00000305481	ENST00000414023		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000305481	ENST00000529237		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000305481	ENST00000256196		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000305481	ENST00000534746		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000305481	ENST00000526063		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
intron-5UTR	ENST00000305481	ENST00000532814		TCGA	RV	SKCM	TCGA-EB-A82C-01A	USP47	chr11	11863771	+	RRAS2	chr11	14317401	-
5CDS-intron	ENST00000358136	ENST00000536782		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-3UTR	ENST00000358136	ENST00000492361		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-3UTR	ENST00000358136	ENST00000376259		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-intron	ENST00000356315	ENST00000536782		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-3UTR	ENST00000356315	ENST00000492361		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-3UTR	ENST00000356315	ENST00000376259		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
3UTR-intron	ENST00000496628	ENST00000536782		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
3UTR-3UTR	ENST00000496628	ENST00000492361		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
3UTR-3UTR	ENST00000496628	ENST00000376259		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-intron	ENST00000543766	ENST00000536782		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-3UTR	ENST00000543766	ENST00000492361		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-3UTR	ENST00000543766	ENST00000376259		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
intron-intron	ENST00000471923	ENST00000536782		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
intron-3UTR	ENST00000471923	ENST00000492361		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
intron-3UTR	ENST00000471923	ENST00000376259		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
intron-intron	ENST00000543710	ENST00000536782		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
intron-3UTR	ENST00000543710	ENST00000492361		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
intron-3UTR	ENST00000543710	ENST00000376259		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	VPS13D	chr1	12476880	+	TNFRSF1B	chr1	12252488	+
5CDS-5UTR	ENST00000380773	ENST00000380520		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380773	ENST00000380524		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380773	ENST00000380529		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380773	ENST00000380539		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380773	ENST00000380546		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380773	ENST00000335686		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380771	ENST00000380520		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380771	ENST00000380524		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380771	ENST00000380529		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380771	ENST00000380539		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380771	ENST00000380546		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380771	ENST00000335686		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380769	ENST00000380520		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380769	ENST00000380524		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380769	ENST00000380529		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380769	ENST00000380539		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380769	ENST00000380546		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380769	ENST00000335686		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380764	ENST00000380520		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380764	ENST00000380524		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380764	ENST00000380529		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380764	ENST00000380539		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380764	ENST00000380546		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-5UTR	ENST00000380764	ENST00000335686		TCGA	RV	SKCM	TCGA-EB-A85J-01A	WRNIP1	chr6	2770595	+	SERPINB6	chr6	2959576	-
5CDS-intron	ENST00000307078	ENST00000233057		TCGA	RV	SKCM	TCGA-ER-A195-06A	AXIN2	chr17	63524685	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000307078	ENST00000395127		TCGA	RV	SKCM	TCGA-ER-A195-06A	AXIN2	chr17	63524685	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000307078	ENST00000405334		TCGA	RV	SKCM	TCGA-ER-A195-06A	AXIN2	chr17	63524685	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000375702	ENST00000233057		TCGA	RV	SKCM	TCGA-ER-A195-06A	AXIN2	chr17	63524685	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000375702	ENST00000395127		TCGA	RV	SKCM	TCGA-ER-A195-06A	AXIN2	chr17	63524685	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000375702	ENST00000405334		TCGA	RV	SKCM	TCGA-ER-A195-06A	AXIN2	chr17	63524685	-	EIF2AK2	chr2	37342384	-
intron-3CDS	ENST00000468640	ENST00000369838		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	C6orf57	chr6	71289269	+	SH3BGRL2	chr6	80383331	+
Frame-shit	ENST00000370474	ENST00000369838		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	C6orf57	chr6	71289269	+	SH3BGRL2	chr6	80383331	+
5UTR-3CDS	ENST00000342350	ENST00000316999		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000342350	ENST00000370452		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000342350	ENST00000370455		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000342350	ENST00000422334		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588499	ENST00000316999		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588499	ENST00000370452		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588499	ENST00000370455		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588499	ENST00000422334		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588295	ENST00000316999		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588295	ENST00000370452		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588295	ENST00000370455		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000588295	ENST00000422334		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000310604	ENST00000316999		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000310604	ENST00000370452		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000310604	ENST00000370455		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
5UTR-3CDS	ENST00000310604	ENST00000422334		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000452796	ENST00000316999		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000452796	ENST00000370452		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000452796	ENST00000370455		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
intron-3CDS	ENST00000452796	ENST00000422334		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	DCAKD	chr17	43138256	-	SMAP1	chr6	71464683	+
In-frame	ENST00000452533	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000452533	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000452533	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000452533	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000452533	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000553257	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000553257	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000553257	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000553257	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000553257	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000549701	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000549701	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000549701	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000549701	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000549701	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000358214	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000358214	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000358214	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000358214	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000358214	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
3UTR-3CDS	ENST00000548671	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
3UTR-3CDS	ENST00000548671	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
3UTR-intron	ENST00000548671	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
3UTR-intron	ENST00000548671	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
3UTR-intron	ENST00000548671	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000266481	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000266481	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000266481	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000266481	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000266481	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000547312	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000547312	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000547312	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000547312	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000547312	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5UTR-3CDS	ENST00000414834	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5UTR-3CDS	ENST00000414834	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5UTR-intron	ENST00000414834	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5UTR-intron	ENST00000414834	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5UTR-intron	ENST00000414834	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000381000	ENST00000548411		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
In-frame	ENST00000381000	ENST00000281474		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000381000	ENST00000551848		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000381000	ENST00000550207		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-intron	ENST00000381000	ENST00000551086		TCGA	RV	SKCM	TCGA-ER-A19E-06A	DNM1L	chr12	32832399	+	BICD1	chr12	32487450	+
5CDS-3UTR	ENST00000585892	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000585892	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000585892	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000585892	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-3UTR	ENST00000314646	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000314646	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000314646	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000314646	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-3UTR	ENST00000359692	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000359692	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000359692	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000359692	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-3UTR	ENST00000389253	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000389253	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000389253	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000389253	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-3UTR	ENST00000355667	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000355667	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000355667	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000355667	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-3UTR	ENST00000408974	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000408974	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000408974	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
5CDS-intron	ENST00000408974	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
intron-3UTR	ENST00000591819	ENST00000541276		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
intron-intron	ENST00000591819	ENST00000393708		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
intron-intron	ENST00000591819	ENST00000492239		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
intron-intron	ENST00000591819	ENST00000494368		TCGA	RV	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	FDX1L	chr19	10419226	-
In-frame	ENST00000399151	ENST00000290354		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	DOPEY2	chr21	37586854	+	CBR3	chr21	37510123	+
intron-3CDS	ENST00000492760	ENST00000290354		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	DOPEY2	chr21	37586854	+	CBR3	chr21	37510123	+
Frame-shit	ENST00000221801	ENST00000586305		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
In-frame	ENST00000221801	ENST00000293062		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
In-frame	ENST00000221801	ENST00000587753		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
In-frame	ENST00000221801	ENST00000433821		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
In-frame	ENST00000221801	ENST00000454404		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
In-frame	ENST00000221801	ENST00000426920		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
Frame-shit	ENST00000221801	ENST00000587738		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000586305		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000293062		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000587753		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000433821		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000454404		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000426920		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
intron-3CDS	ENST00000593503	ENST00000587738		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RASGRP4	chr19	38900736	-
5UTR-3CDS	ENST00000305885	ENST00000376217		TCGA	RV	SKCM	TCGA-EB-A82B-01A	FEN1	chr11	61560500	+	GDPD4	chr11	76940277	-
5UTR-3CDS	ENST00000305885	ENST00000315938		TCGA	RV	SKCM	TCGA-EB-A82B-01A	FEN1	chr11	61560500	+	GDPD4	chr11	76940277	-
5UTR-intron	ENST00000305885	ENST00000527489		TCGA	RV	SKCM	TCGA-EB-A82B-01A	FEN1	chr11	61560500	+	GDPD4	chr11	76940277	-
Frame-shit	ENST00000376958	ENST00000377047		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	GPR180	chr13	95257803	+	GPC6	chr13	95034668	+
Frame-shit	ENST00000327946	ENST00000446394		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
Frame-shit	ENST00000327946	ENST00000371681		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
Frame-shit	ENST00000327946	ENST00000298068		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
5CDS-intron	ENST00000327946	ENST00000536715		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
5CDS-intron	ENST00000327946	ENST00000498446		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
5CDS-intron	ENST00000327946	ENST00000371667		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000536331	ENST00000446394		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000536331	ENST00000371681		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000536331	ENST00000298068		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000536331	ENST00000536715		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000536331	ENST00000498446		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000536331	ENST00000371667		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000552278	ENST00000446394		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000552278	ENST00000371681		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-3CDS	ENST00000552278	ENST00000298068		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000552278	ENST00000536715		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000552278	ENST00000498446		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
intron-intron	ENST00000552278	ENST00000371667		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	GRID1	chr10	88123698	-	HECTD2	chr10	93185038	+
5CDS-5UTR	ENST00000392272	ENST00000367922		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000392272	ENST00000367921		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000368173	ENST00000367922		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000368173	ENST00000367921		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5UTR-5UTR	ENST00000360089	ENST00000367922		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5UTR-5UTR	ENST00000360089	ENST00000367921		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000359209	ENST00000367922		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000359209	ENST00000367921		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000416935	ENST00000367922		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
5CDS-5UTR	ENST00000416935	ENST00000367921		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000368172	ENST00000367922		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
intron-5UTR	ENST00000368172	ENST00000367921		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	KIRREL	chr1	157963518	+	DDR2	chr1	162625001	+
Frame-shit	ENST00000558518	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558518	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558518	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558518	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558518	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558518	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
5CDS-intron	ENST00000558518	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000557933	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000557933	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000557933	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000557933	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000557933	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000557933	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
5CDS-intron	ENST00000557933	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000455727	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000455727	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000455727	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000455727	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000455727	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000455727	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
5CDS-intron	ENST00000455727	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000535915	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000535915	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000535915	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000535915	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000535915	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000535915	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
5CDS-intron	ENST00000535915	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000545707	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000545707	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000545707	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000545707	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000545707	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000545707	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-intron	ENST00000545707	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558013	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558013	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558013	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558013	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558013	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
Frame-shit	ENST00000558013	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
5CDS-intron	ENST00000558013	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000560628	ENST00000585892		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000560628	ENST00000314646		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000560628	ENST00000359692		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000560628	ENST00000389253		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000560628	ENST00000355667		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-3CDS	ENST00000560628	ENST00000408974		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
intron-intron	ENST00000560628	ENST00000591819		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	LDLR	chr19	11231198	+	DNM2	chr19	10922940	+
5CDS-5UTR	ENST00000424843	ENST00000424082		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000424843	ENST00000259351		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000424843	ENST00000394022		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000424843	ENST00000373436		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000424843	ENST00000373434		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000424843	ENST00000394011		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-3UTR	ENST00000424843	ENST00000480993		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000276654	ENST00000424082		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000276654	ENST00000259351		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000276654	ENST00000394022		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000276654	ENST00000373436		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000276654	ENST00000373434		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000276654	ENST00000394011		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-3UTR	ENST00000276654	ENST00000480993		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-5UTR	ENST00000518375	ENST00000424082		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-5UTR	ENST00000518375	ENST00000259351		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-5UTR	ENST00000518375	ENST00000394022		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-5UTR	ENST00000518375	ENST00000373436		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-5UTR	ENST00000518375	ENST00000373434		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-5UTR	ENST00000518375	ENST00000394011		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
intron-3UTR	ENST00000518375	ENST00000480993		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	LRP12	chr8	105601047	-	RALGPS1	chr9	129724504	+
5CDS-5UTR	ENST00000229795	ENST00000394947		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229795	ENST00000360439		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229795	ENST00000394949		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229795	ENST00000567289		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229794	ENST00000394947		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229794	ENST00000360439		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229794	ENST00000394949		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000229794	ENST00000567289		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5UTR-5UTR	ENST00000468133	ENST00000394947		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5UTR-5UTR	ENST00000468133	ENST00000360439		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5UTR-5UTR	ENST00000468133	ENST00000394949		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5UTR-5UTR	ENST00000468133	ENST00000567289		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000310795	ENST00000394947		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000310795	ENST00000360439		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000310795	ENST00000394949		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
5CDS-5UTR	ENST00000310795	ENST00000567289		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MAPK14	chr6	35996050	+	SIN3A	chr15	75722749	-
Frame-shit	ENST00000357028	ENST00000377869		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000357028	ENST00000220616		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000357028	ENST00000542445		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000357028	ENST00000519543		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
5CDS-intron	ENST00000357028	ENST00000522523		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000292035	ENST00000377869		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000292035	ENST00000220616		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000292035	ENST00000542445		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000292035	ENST00000519543		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
5CDS-intron	ENST00000292035	ENST00000522523		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
intron-3CDS	ENST00000474263	ENST00000377869		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
intron-3CDS	ENST00000474263	ENST00000220616		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
intron-3CDS	ENST00000474263	ENST00000542445		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
intron-3CDS	ENST00000474263	ENST00000519543		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
intron-intron	ENST00000474263	ENST00000522523		TCGA	RV	SKCM	TCGA-EB-A24D-01A	MED27	chr9	134889724	-	TG	chr8	134107288	+
Frame-shit	ENST00000421797	ENST00000444921		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-5UTR	ENST00000421797	ENST00000339582		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-5UTR	ENST00000421797	ENST00000358373		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-intron	ENST00000421797	ENST00000405249		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-intron	ENST00000421797	ENST00000480995		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-3CDS	ENST00000429546	ENST00000444921		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-5UTR	ENST00000429546	ENST00000339582		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-5UTR	ENST00000429546	ENST00000358373		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-intron	ENST00000429546	ENST00000405249		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-intron	ENST00000429546	ENST00000480995		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
Frame-shit	ENST00000352689	ENST00000444921		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-5UTR	ENST00000352689	ENST00000339582		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-5UTR	ENST00000352689	ENST00000358373		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-intron	ENST00000352689	ENST00000405249		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
5CDS-intron	ENST00000352689	ENST00000480995		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-3CDS	ENST00000498778	ENST00000444921		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-5UTR	ENST00000498778	ENST00000339582		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-5UTR	ENST00000498778	ENST00000358373		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-intron	ENST00000498778	ENST00000405249		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
intron-intron	ENST00000498778	ENST00000480995		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131096142	+	GRM8	chr7	126883569	-
In-frame	ENST00000317173	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000317173	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000317173	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000317173	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000317173	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
5CDS-intron	ENST00000317173	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000441698	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000441698	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000441698	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000441698	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000441698	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
5CDS-intron	ENST00000441698	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000518255	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000518255	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000518255	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000518255	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000518255	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
5CDS-intron	ENST00000518255	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521209	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521209	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521209	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521209	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000521209	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-intron	ENST00000521209	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000528246	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000528246	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000528246	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000528246	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000528246	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
5CDS-intron	ENST00000528246	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000382490	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000382490	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000382490	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000382490	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000382490	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
5CDS-intron	ENST00000382490	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000517594	ENST00000454498		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000517594	ENST00000332246		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000517594	ENST00000311540		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000517594	ENST00000522854		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-3CDS	ENST00000517594	ENST00000544602		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
intron-intron	ENST00000517594	ENST00000518542		TCGA	RV	SKCM	TCGA-EB-A3XF-01A	MSRA	chr8	10177499	+	CSGALNACT1	chr8	19266205	-
In-frame	ENST00000362042	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000362042	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000362042	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000362042	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000585291	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000585291	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000585291	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000585291	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000357480	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000357480	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000357480	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000357480	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000361665	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000361665	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000361665	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000361665	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
intron-3CDS	ENST00000579481	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
intron-3CDS	ENST00000579481	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
intron-intron	ENST00000579481	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
intron-intron	ENST00000579481	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000582155	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000582155	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000582155	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000582155	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000583378	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000583378	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000583378	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000583378	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000536222	ENST00000255559		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
In-frame	ENST00000536222	ENST00000542342		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000536222	ENST00000579988		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
5CDS-intron	ENST00000536222	ENST00000579732		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	NFE2L1	chr17	46134864	+	SLC39A11	chr17	70944014	-
Frame-shit	ENST00000552283	ENST00000548058		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
Frame-shit	ENST00000552283	ENST00000261206		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000552283	ENST00000548324		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
In-frame	ENST00000251074	ENST00000548058		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
In-frame	ENST00000251074	ENST00000261206		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
5CDS-intron	ENST00000251074	ENST00000548324		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
5UTR-3CDS	ENST00000543021	ENST00000548058		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
5UTR-3CDS	ENST00000543021	ENST00000261206		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
5UTR-intron	ENST00000543021	ENST00000548324		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	NUP37	chr12	102492884	-	ACSS3	chr12	81503339	+
In-frame	ENST00000284548	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
In-frame	ENST00000284548	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000284548	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000284548	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
In-frame	ENST00000570156	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
In-frame	ENST00000570156	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000570156	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000570156	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366709	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366709	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366709	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366709	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
In-frame	ENST00000422127	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
In-frame	ENST00000422127	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000422127	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000422127	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366707	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366707	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366707	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366707	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000359599	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000359599	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000359599	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000359599	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000602685	ENST00000602281		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000602685	ENST00000539444		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000602873		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000366633		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000366636		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000535983		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000537876		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000602685	ENST00000366637		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000602685	ENST00000439617		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000427560		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000317586		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228434504	+	DISC1	chr1	231829572	+
Frame-shit	ENST00000356770	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000356770	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000356770	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000394830	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000394830	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000394830	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000296302	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000296302	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000296302	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000337303	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000337303	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000337303	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000410007	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000410007	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000410007	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409057	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409057	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409057	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409114	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409114	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409114	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409767	ENST00000233027		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409767	ENST00000535191		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
Frame-shit	ENST00000409767	ENST00000383721		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	PBRM1	chr3	52637537	-	NEK4	chr3	52773650	-
In-frame	ENST00000025008	ENST00000353788		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
In-frame	ENST00000025008	ENST00000396330		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
In-frame	ENST00000025008	ENST00000345957		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
In-frame	ENST00000435644	ENST00000353788		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
In-frame	ENST00000435644	ENST00000396330		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
In-frame	ENST00000435644	ENST00000345957		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
intron-3CDS	ENST00000521611	ENST00000353788		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
intron-3CDS	ENST00000521611	ENST00000396330		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
intron-3CDS	ENST00000521611	ENST00000345957		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
Frame-shit	ENST00000539297	ENST00000353788		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
Frame-shit	ENST00000539297	ENST00000396330		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
Frame-shit	ENST00000539297	ENST00000345957		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	RB1CC1	chr8	53568568	-	SNX16	chr8	82736175	-
intron-intron	ENST00000598441	ENST00000371754		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000598441	ENST00000469991		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000598441	ENST00000371752		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000598441	ENST00000396105		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000221448	ENST00000371754		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000221448	ENST00000469991		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000221448	ENST00000371752		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000221448	ENST00000396105		TCGA	RV	SKCM	TCGA-ER-A19P-06A	SNRNP70	chr19	49611860	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000300737	ENST00000396986		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
In-frame	ENST00000300737	ENST00000300730		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
Frame-shit	ENST00000300737	ENST00000396993		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-5UTR	ENST00000300737	ENST00000396991		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-3UTR	ENST00000300737	ENST00000532017		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-5UTR	ENST00000300737	ENST00000465307		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-5UTR	ENST00000300737	ENST00000493547		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000300737	ENST00000278243		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000300737	ENST00000463452		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000300737	ENST00000479072		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000300737	ENST00000496834		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
In-frame	ENST00000527651	ENST00000396986		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
In-frame	ENST00000527651	ENST00000300730		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
Frame-shit	ENST00000527651	ENST00000396993		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-5UTR	ENST00000527651	ENST00000396991		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-3UTR	ENST00000527651	ENST00000532017		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-5UTR	ENST00000527651	ENST00000465307		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-5UTR	ENST00000527651	ENST00000493547		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000527651	ENST00000278243		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000527651	ENST00000463452		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000527651	ENST00000479072		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
5CDS-intron	ENST00000527651	ENST00000496834		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3CDS	ENST00000527484	ENST00000396986		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3CDS	ENST00000527484	ENST00000300730		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3CDS	ENST00000527484	ENST00000396993		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-5UTR	ENST00000527484	ENST00000396991		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3UTR	ENST00000527484	ENST00000532017		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-5UTR	ENST00000527484	ENST00000465307		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-5UTR	ENST00000527484	ENST00000493547		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000527484	ENST00000278243		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000527484	ENST00000463452		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000527484	ENST00000479072		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000527484	ENST00000496834		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3CDS	ENST00000533977	ENST00000396986		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3CDS	ENST00000533977	ENST00000300730		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3CDS	ENST00000533977	ENST00000396993		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-5UTR	ENST00000533977	ENST00000396991		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-3UTR	ENST00000533977	ENST00000532017		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-5UTR	ENST00000533977	ENST00000465307		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-5UTR	ENST00000533977	ENST00000493547		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000533977	ENST00000278243		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000533977	ENST00000463452		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000533977	ENST00000479072		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
intron-intron	ENST00000533977	ENST00000496834		TCGA	RV	SKCM	TCGA-EE-A29D-06A	STIM1	chr11	3877639	+	PGAP2	chr11	3829524	+
Frame-shit	ENST00000394275	ENST00000262879		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
Frame-shit	ENST00000394275	ENST00000397042		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
Frame-shit	ENST00000394275	ENST00000397038		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5CDS-intron	ENST00000394275	ENST00000537204		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5CDS-intron	ENST00000394275	ENST00000397040		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5CDS-intron	ENST00000394275	ENST00000490114		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
Frame-shit	ENST00000418476	ENST00000262879		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
Frame-shit	ENST00000418476	ENST00000397042		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
Frame-shit	ENST00000418476	ENST00000397038		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5CDS-intron	ENST00000418476	ENST00000537204		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5CDS-intron	ENST00000418476	ENST00000397040		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5CDS-intron	ENST00000418476	ENST00000490114		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
intron-3CDS	ENST00000553671	ENST00000262879		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
intron-3CDS	ENST00000553671	ENST00000397042		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
intron-3CDS	ENST00000553671	ENST00000397038		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
intron-intron	ENST00000553671	ENST00000537204		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
intron-intron	ENST00000553671	ENST00000397040		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
intron-intron	ENST00000553671	ENST00000490114		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	UNC45A	chr15	91493845	+	RALGAPB	chr20	37179714	+
5UTR-3CDS	ENST00000215794	ENST00000248975		TCGA	RV	SKCM	TCGA-D3-A5GN-06A	USP18	chr22	18632989	+	YWHAH	chr22	32352126	+
5UTR-3CDS	ENST00000215794	ENST00000397492		TCGA	RV	SKCM	TCGA-D3-A5GN-06A	USP18	chr22	18632989	+	YWHAH	chr22	32352126	+
5UTR-3UTR	ENST00000215794	ENST00000471374		TCGA	RV	SKCM	TCGA-D3-A5GN-06A	USP18	chr22	18632989	+	YWHAH	chr22	32352126	+
5UTR-5UTR	ENST00000430629	ENST00000374005		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000399173		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000545953		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000430629	ENST00000374004		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000468038		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000374005		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000399173		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000545953		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000536657	ENST00000374004		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000468038		TCGA	RV	SKCM	TCGA-ER-A19W-06A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-3CDS	ENST00000216268	ENST00000405486		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZBED4	chr22	50247637	+	RANGAP1	chr22	41670731	-
5UTR-3CDS	ENST00000216268	ENST00000356244		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZBED4	chr22	50247637	+	RANGAP1	chr22	41670731	-
5UTR-3CDS	ENST00000216268	ENST00000455915		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZBED4	chr22	50247637	+	RANGAP1	chr22	41670731	-
5UTR-3CDS	ENST00000216268	ENST00000407260		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	ZBED4	chr22	50247637	+	RANGAP1	chr22	41670731	-
In-frame	ENST00000327835	ENST00000256108		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5CDS-intron	ENST00000327835	ENST00000311489		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5CDS-intron	ENST00000327835	ENST00000449740		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5CDS-5UTR	ENST00000327835	ENST00000523710		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5UTR-3CDS	ENST00000520336	ENST00000256108		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5UTR-intron	ENST00000520336	ENST00000311489		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5UTR-intron	ENST00000520336	ENST00000449740		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
5UTR-5UTR	ENST00000520336	ENST00000523710		TCGA	RV	SKCM	TCGA-ER-A19T-01A	ZNF704	chr8	81599461	-	IMPA1	chr8	82583282	-
Frame-shit	ENST00000268070	ENST00000248899		TCGA	RV	SKCM	TCGA-ER-A19C-06A	ADAMTS17	chr15	100533253	-	NCF4	chr22	37260087	+
Frame-shit	ENST00000268070	ENST00000397147		TCGA	RV	SKCM	TCGA-ER-A19C-06A	ADAMTS17	chr15	100533253	-	NCF4	chr22	37260087	+
intron-3CDS	ENST00000559976	ENST00000248899		TCGA	RV	SKCM	TCGA-ER-A19C-06A	ADAMTS17	chr15	100533253	-	NCF4	chr22	37260087	+
intron-3CDS	ENST00000559976	ENST00000397147		TCGA	RV	SKCM	TCGA-ER-A19C-06A	ADAMTS17	chr15	100533253	-	NCF4	chr22	37260087	+
5CDS-5UTR	ENST00000338316	ENST00000514342		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-5UTR	ENST00000338316	ENST00000505697		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000511363		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000503750		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000281631		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000514067		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000505554		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000513738		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000338316	ENST00000503665		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-5UTR	ENST00000537121	ENST00000514342		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-5UTR	ENST00000537121	ENST00000505697		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000511363		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000503750		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000281631		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000514067		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000505554		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000513738		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000537121	ENST00000503665		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-5UTR	ENST00000513693	ENST00000514342		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-5UTR	ENST00000513693	ENST00000505697		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000511363		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000503750		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000281631		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000514067		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000505554		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000513738		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
intron-intron	ENST00000513693	ENST00000503665		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ADCY2	chr5	7784562	+	PARP8	chr5	50055477	+
5CDS-intron	ENST00000242057	ENST00000371322		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
5CDS-intron	ENST00000242057	ENST00000336592		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000242057	ENST00000404115		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
5CDS-5UTR	ENST00000242057	ENST00000486604		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000492120	ENST00000371322		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
intron-intron	ENST00000492120	ENST00000336592		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000492120	ENST00000404115		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
intron-5UTR	ENST00000492120	ENST00000486604		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	AHR	chr7	17338953	+	CUL4B	chrX	119708485	-
Frame-shit	ENST00000306065	ENST00000259605		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
Frame-shit	ENST00000306065	ENST00000353739		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000306065	ENST00000357058		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000306065	ENST00000350199		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000306065	ENST00000377885		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000306065	ENST00000377877		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000306065	ENST00000491349		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
Frame-shit	ENST00000587352	ENST00000259605		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
Frame-shit	ENST00000587352	ENST00000353739		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000587352	ENST00000357058		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000587352	ENST00000350199		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000587352	ENST00000377885		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000587352	ENST00000377877		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
5CDS-5UTR	ENST00000587352	ENST00000491349		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	ANKRD27	chr19	33140588	-	RNF38	chr9	36376124	-
In-frame	ENST00000420843	ENST00000313010		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000420843	ENST00000393399		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000420843	ENST00000535099		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
5CDS-5UTR	ENST00000420843	ENST00000525772		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000393505	ENST00000313010		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000393505	ENST00000393399		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000393505	ENST00000535099		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
5CDS-5UTR	ENST00000393505	ENST00000525772		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000360025	ENST00000313010		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000360025	ENST00000393399		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000360025	ENST00000535099		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
5CDS-5UTR	ENST00000360025	ENST00000525772		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82550467	-
In-frame	ENST00000366844	ENST00000328205		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000366844	ENST00000366801		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000366844	ENST00000481685		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000366843	ENST00000328205		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000366843	ENST00000366801		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000366843	ENST00000481685		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000284563	ENST00000328205		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000284563	ENST00000366801		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
In-frame	ENST00000284563	ENST00000481685		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000391874	ENST00000328205		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000391874	ENST00000366801		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
intron-3CDS	ENST00000391874	ENST00000481685		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	ENAH	chr1	225840388	-	LIN9	chr1	226438620	-
5CDS-5UTR	ENST00000371730	ENST00000379339		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000448924		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000294576		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000421241		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000482816		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000437760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000379320		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371730	ENST00000379319		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000379339		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000448924		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000294576		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000421241		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000482816		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000437760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000379320		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5CDS-5UTR	ENST00000371733	ENST00000379319		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000379339		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000448924		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000294576		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000421241		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000482816		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000437760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000379320		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000396122	ENST00000379319		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000379339		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000448924		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000294576		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000421241		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000482816		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000437760		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000379320		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
intron-5UTR	ENST00000493793	ENST00000379319		TCGA	RV	SKCM	TCGA-EB-A82C-01A	EPS15	chr1	51929345	-	C1orf159	chr1	1027483	-
5UTR-3CDS	ENST00000372583	ENST00000343433		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
5UTR-5UTR	ENST00000372583	ENST00000484327		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
5UTR-3CDS	ENST00000372584	ENST00000343433		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
5UTR-5UTR	ENST00000372584	ENST00000484327		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000247584	ENST00000343433		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000247584	ENST00000484327		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000429157	ENST00000343433		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000429157	ENST00000484327		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000460604	ENST00000343433		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000460604	ENST00000484327		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42384084	-	C1orf168	chr1	57233611	-
Frame-shit	ENST00000361999	ENST00000418530		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000361999	ENST00000256707		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000361999	ENST00000427284		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000361999	ENST00000473731		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000361999	ENST00000319688		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
5CDS-intron	ENST00000361999	ENST00000436566		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000355123	ENST00000418530		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000355123	ENST00000256707		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000355123	ENST00000427284		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000355123	ENST00000473731		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000355123	ENST00000319688		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
5CDS-intron	ENST00000355123	ENST00000436566		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000406921	ENST00000418530		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000406921	ENST00000256707		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000406921	ENST00000427284		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000406921	ENST00000473731		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
Frame-shit	ENST00000406921	ENST00000319688		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
5CDS-intron	ENST00000406921	ENST00000436566		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
intron-3CDS	ENST00000407704	ENST00000418530		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
intron-3CDS	ENST00000407704	ENST00000256707		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
intron-3CDS	ENST00000407704	ENST00000427284		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
intron-3CDS	ENST00000407704	ENST00000473731		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
intron-3CDS	ENST00000407704	ENST00000319688		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
intron-intron	ENST00000407704	ENST00000436566		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24498582	-	KIDINS220	chr2	8926487	-
5CDS-5UTR	ENST00000341776	ENST00000504387		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000341776	ENST00000379446		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000341776	ENST00000379433		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
5CDS-intron	ENST00000341776	ENST00000508800		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-5UTR	ENST00000397311	ENST00000504387		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000397311	ENST00000379446		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000397311	ENST00000379433		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000397311	ENST00000508800		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-5UTR	ENST00000541660	ENST00000504387		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000541660	ENST00000379446		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000541660	ENST00000379433		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000541660	ENST00000508800		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-5UTR	ENST00000474854	ENST00000504387		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000474854	ENST00000379446		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000474854	ENST00000379433		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
intron-intron	ENST00000474854	ENST00000508800		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	NEDD9	chr6	11306388	-
In-frame	ENST00000216237	ENST00000396231		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
In-frame	ENST00000216237	ENST00000262726		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
Frame-shit	ENST00000216237	ENST00000358439		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
5CDS-intron	ENST00000216237	ENST00000356087		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
5CDS-intron	ENST00000216237	ENST00000461800		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
3UTR-3CDS	ENST00000489136	ENST00000396231		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
3UTR-3CDS	ENST00000489136	ENST00000262726		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
3UTR-3CDS	ENST00000489136	ENST00000358439		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
3UTR-intron	ENST00000489136	ENST00000356087		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
3UTR-intron	ENST00000489136	ENST00000461800		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	L3MBTL2	chr22	41610030	+	EFCAB6	chr22	44074043	-
Frame-shit	ENST00000405088	ENST00000406451		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000405088	ENST00000401921		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000405088	ENST00000432645		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000405088	ENST00000441542		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000405088	ENST00000417496		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000405088	ENST00000476135		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000405088	ENST00000405010		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000405088	ENST00000428307		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000405088	ENST00000406072		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000405088	ENST00000456174		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000405088	ENST00000524023		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000471899	ENST00000406451		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000471899	ENST00000401921		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000471899	ENST00000432645		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000471899	ENST00000441542		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-3CDS	ENST00000471899	ENST00000417496		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000471899	ENST00000476135		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000471899	ENST00000405010		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000471899	ENST00000428307		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000471899	ENST00000406072		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000471899	ENST00000456174		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
intron-intron	ENST00000471899	ENST00000524023		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000297508	ENST00000406451		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000297508	ENST00000401921		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000297508	ENST00000432645		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000297508	ENST00000441542		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000297508	ENST00000417496		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000297508	ENST00000476135		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000297508	ENST00000405010		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000297508	ENST00000428307		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000297508	ENST00000406072		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000297508	ENST00000456174		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
5CDS-intron	ENST00000297508	ENST00000524023		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MICALL2	chr7	1484288	-	HDAC9	chr7	18684294	+
Frame-shit	ENST00000395811	ENST00000295756		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-intron	ENST00000395811	ENST00000426646		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-3UTR	ENST00000395811	ENST00000493604		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
Frame-shit	ENST00000444976	ENST00000295756		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-intron	ENST00000444976	ENST00000426646		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-3UTR	ENST00000444976	ENST00000493604		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
Frame-shit	ENST00000395804	ENST00000295756		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-intron	ENST00000395804	ENST00000426646		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-3UTR	ENST00000395804	ENST00000493604		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
Frame-shit	ENST00000341712	ENST00000295756		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-intron	ENST00000341712	ENST00000426646		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-3UTR	ENST00000341712	ENST00000493604		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
intron-3CDS	ENST00000395806	ENST00000295756		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
intron-intron	ENST00000395806	ENST00000426646		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
intron-3UTR	ENST00000395806	ENST00000493604		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
3UTR-3CDS	ENST00000395807	ENST00000295756		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
3UTR-intron	ENST00000395807	ENST00000426646		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
3UTR-3UTR	ENST00000395807	ENST00000493604		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	MPRIP	chr17	16981390	+	TRAT1	chr3	108549517	+
5CDS-5UTR	ENST00000282516	ENST00000322611		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NIPBL	chr5	37001180	+	BASP1	chr5	17275317	+
5CDS-5UTR	ENST00000448238	ENST00000322611		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NIPBL	chr5	37001180	+	BASP1	chr5	17275317	+
intron-5UTR	ENST00000504430	ENST00000322611		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NIPBL	chr5	37001180	+	BASP1	chr5	17275317	+
5CDS-5UTR	ENST00000317775	ENST00000536769		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000317775	ENST00000538617		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-intron	ENST00000317775	ENST00000546120		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000317775	ENST00000339647		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000317775	ENST00000536661		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
3UTR-5UTR	ENST00000344089	ENST00000536769		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
3UTR-5UTR	ENST00000344089	ENST00000538617		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
3UTR-intron	ENST00000344089	ENST00000546120		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
3UTR-5UTR	ENST00000344089	ENST00000339647		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
3UTR-5UTR	ENST00000344089	ENST00000536661		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000338101	ENST00000536769		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000338101	ENST00000538617		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-intron	ENST00000338101	ENST00000546120		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000338101	ENST00000339647		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
5CDS-5UTR	ENST00000338101	ENST00000536661		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
intron-5UTR	ENST00000549189	ENST00000536769		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
intron-5UTR	ENST00000549189	ENST00000538617		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
intron-intron	ENST00000549189	ENST00000546120		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
intron-5UTR	ENST00000549189	ENST00000339647		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
intron-5UTR	ENST00000549189	ENST00000536661		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125399308	-
In-frame	ENST00000398238	ENST00000362042		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000398238	ENST00000585291		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000398238	ENST00000357480		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000398238	ENST00000361665		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000398238	ENST00000579481		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000398238	ENST00000582155		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000398238	ENST00000583378		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000398238	ENST00000536222		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000225282	ENST00000362042		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000225282	ENST00000585291		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000225282	ENST00000357480		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000225282	ENST00000361665		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000225282	ENST00000579481		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000225282	ENST00000582155		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000225282	ENST00000583378		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000225282	ENST00000536222		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000575068	ENST00000362042		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000575068	ENST00000585291		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000575068	ENST00000357480		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000575068	ENST00000361665		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000575068	ENST00000579481		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000575068	ENST00000582155		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000575068	ENST00000583378		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
5CDS-intron	ENST00000575068	ENST00000536222		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	NSF	chr17	44782220	+	NFE2L1	chr17	46133748	+
In-frame	ENST00000351960	ENST00000526343		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000351960	ENST00000282441		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000351960	ENST00000537274		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000351960	ENST00000345877		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000351960	ENST00000531439		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000351960	ENST00000524575		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
5CDS-intron	ENST00000351960	ENST00000528834		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000358965	ENST00000526343		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000358965	ENST00000282441		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000358965	ENST00000537274		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000358965	ENST00000345877		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000358965	ENST00000531439		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000358965	ENST00000524575		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
5CDS-intron	ENST00000358965	ENST00000528834		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000393695	ENST00000526343		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000393695	ENST00000282441		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000393695	ENST00000537274		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000393695	ENST00000345877		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000393695	ENST00000531439		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
In-frame	ENST00000393695	ENST00000524575		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
5CDS-intron	ENST00000393695	ENST00000528834		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-3CDS	ENST00000543450	ENST00000526343		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-3CDS	ENST00000543450	ENST00000282441		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-3CDS	ENST00000543450	ENST00000537274		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-3CDS	ENST00000543450	ENST00000345877		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-3CDS	ENST00000543450	ENST00000531439		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-3CDS	ENST00000543450	ENST00000524575		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
intron-intron	ENST00000543450	ENST00000528834		TCGA	RV	SKCM	TCGA-GN-A4U7-06A	NUMA1	chr11	71746948	-	YAP1	chr11	102094353	+
Frame-shit	ENST00000353809	ENST00000261609		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	OCA2	chr15	28326794	-	HERC2	chr15	28370339	-
5CDS-intron	ENST00000353809	ENST00000563945		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	OCA2	chr15	28326794	-	HERC2	chr15	28370339	-
Frame-shit	ENST00000354638	ENST00000261609		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	OCA2	chr15	28326794	-	HERC2	chr15	28370339	-
5CDS-intron	ENST00000354638	ENST00000563945		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	OCA2	chr15	28326794	-	HERC2	chr15	28370339	-
Frame-shit	ENST00000382996	ENST00000261609		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	OCA2	chr15	28326794	-	HERC2	chr15	28370339	-
5CDS-intron	ENST00000382996	ENST00000563945		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	OCA2	chr15	28326794	-	HERC2	chr15	28370339	-
In-frame	ENST00000446845	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000446845	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000446845	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000446845	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
5CDS-intron	ENST00000446845	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
5CDS-intron	ENST00000446845	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000311806	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000311806	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000311806	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
In-frame	ENST00000311806	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
5CDS-intron	ENST00000311806	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
5CDS-intron	ENST00000311806	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
intron-3CDS	ENST00000492714	ENST00000398590		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
intron-3CDS	ENST00000492714	ENST00000295900		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
intron-3CDS	ENST00000492714	ENST00000487717		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
intron-3CDS	ENST00000492714	ENST00000538065		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
intron-intron	ENST00000492714	ENST00000484332		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
intron-intron	ENST00000492714	ENST00000488239		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	OXSR1	chr3	38232330	+	ATXN7	chr3	63938055	+
Frame-shit	ENST00000446342	ENST00000274712		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	PLAU	chr10	75677254	+	ZMAT2	chr5	140080404	+
intron-3CDS	ENST00000494287	ENST00000274712		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	PLAU	chr10	75677254	+	ZMAT2	chr5	140080404	+
Frame-shit	ENST00000372764	ENST00000274712		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	PLAU	chr10	75677254	+	ZMAT2	chr5	140080404	+
Frame-shit	ENST00000372762	ENST00000274712		TCGA	RV	SKCM	TCGA-EE-A2M5-06A	PLAU	chr10	75677254	+	ZMAT2	chr5	140080404	+
Frame-shit	ENST00000371514	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000371514	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000528311	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000528311	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000371509	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000371509	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000407246	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000407246	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
intron-3CDS	ENST00000371513	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
intron-intron	ENST00000371513	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
intron-3CDS	ENST00000473584	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
intron-intron	ENST00000473584	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000430330	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000430330	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000408941	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000408941	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000435345	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000435345	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
Frame-shit	ENST00000488965	ENST00000370008		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5CDS-intron	ENST00000488965	ENST00000485167		TCGA	RV	SKCM	TCGA-EE-A2M8-06A	SCP2	chr1	53480715	+	STXBP3	chr1	109336204	+
5UTR-3CDS	ENST00000552432	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
5UTR-5UTR	ENST00000552432	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
5UTR-3CDS	ENST00000547379	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
5UTR-5UTR	ENST00000547379	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
5UTR-3CDS	ENST00000549465	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
5UTR-5UTR	ENST00000549465	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-3CDS	ENST00000552024	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-5UTR	ENST00000552024	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-3CDS	ENST00000261187	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-5UTR	ENST00000261187	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-3CDS	ENST00000543448	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-5UTR	ENST00000543448	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-3CDS	ENST00000549588	ENST00000265070		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
intron-5UTR	ENST00000549588	ENST00000512668		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	SLC16A7	chr12	59990017	+	GOLPH3	chr5	32135792	-
5UTR-3CDS	ENST00000311160	ENST00000289672		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-intron	ENST00000311160	ENST00000462350		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-3CDS	ENST00000355730	ENST00000289672		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-intron	ENST00000355730	ENST00000462350		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-3CDS	ENST00000398879	ENST00000289672		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-intron	ENST00000398879	ENST00000462350		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-3CDS	ENST00000442536	ENST00000289672		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-intron	ENST00000442536	ENST00000462350		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-3CDS	ENST00000458317	ENST00000289672		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
5UTR-intron	ENST00000458317	ENST00000462350		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
intron-3CDS	ENST00000474346	ENST00000289672		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
intron-intron	ENST00000474346	ENST00000462350		TCGA	RV	SKCM	TCGA-ER-A19H-06A	TNS3	chr7	47546505	-	PKD1L1	chr7	47894863	-
Frame-shit	ENST00000367590	ENST00000418089		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367590	ENST00000413720		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367590	ENST00000367536		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367590	ENST00000367535		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
5CDS-intron	ENST00000367590	ENST00000469280		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367589	ENST00000418089		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367589	ENST00000413720		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367589	ENST00000367536		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
Frame-shit	ENST00000367589	ENST00000367535		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
5CDS-intron	ENST00000367589	ENST00000469280		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
intron-3CDS	ENST00000467345	ENST00000418089		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
intron-3CDS	ENST00000467345	ENST00000413720		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
intron-3CDS	ENST00000467345	ENST00000367536		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
intron-3CDS	ENST00000467345	ENST00000367535		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
intron-intron	ENST00000467345	ENST00000469280		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	XPR1	chr1	180651547	+	NCF2	chr1	183546842	-
In-frame	ENST00000394156	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
In-frame	ENST00000394156	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
5CDS-intron	ENST00000394156	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000268603	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-intron	ENST00000268603	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000566827	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-intron	ENST00000566827	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-3CDS	ENST00000569624	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
intron-intron	ENST00000569624	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	CDH11	chr16	64982512	-	KIFC3	chr16	57795448	-
3UTR-3CDS	ENST00000346329	ENST00000468888		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-3CDS	ENST00000346329	ENST00000399362		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-3CDS	ENST00000346329	ENST00000539981		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-3CDS	ENST00000346329	ENST00000359576		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-3CDS	ENST00000346329	ENST00000307312		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-3CDS	ENST00000346329	ENST00000480013		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-3CDS	ENST00000346329	ENST00000461133		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-intron	ENST00000346329	ENST00000313350		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-intron	ENST00000346329	ENST00000487200		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-intron	ENST00000346329	ENST00000333778		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
3UTR-intron	ENST00000346329	ENST00000482896		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000468888		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000399362		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000539981		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000359576		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000307312		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000480013		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000301843	ENST00000461133		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000301843	ENST00000313350		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000301843	ENST00000487200		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000301843	ENST00000333778		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000301843	ENST00000482896		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000468888		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000399362		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000539981		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000359576		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000307312		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000480013		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000527622	ENST00000461133		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000527622	ENST00000313350		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000527622	ENST00000487200		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000527622	ENST00000333778		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000527622	ENST00000482896		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000468888		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000399362		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000539981		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000359576		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000307312		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000480013		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
In-frame	ENST00000376561	ENST00000461133		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000376561	ENST00000313350		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000376561	ENST00000487200		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000376561	ENST00000333778		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000376561	ENST00000482896		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000468888		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000399362		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000539981		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000359576		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000307312		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000480013		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-3CDS	ENST00000538675	ENST00000461133		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000538675	ENST00000313350		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000538675	ENST00000487200		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000538675	ENST00000333778		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
intron-intron	ENST00000538675	ENST00000482896		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CTTN	chr11	70282681	+	CLASP2	chr3	33602368	-
5UTR-5UTR	ENST00000321753	ENST00000265109		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000321753	ENST00000512629		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000321753	ENST00000428746		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000321753	ENST00000503673		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000321753	ENST00000515799		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-intron	ENST00000321753	ENST00000506376		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-intron	ENST00000321753	ENST00000507276		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
5UTR-intron	ENST00000321753	ENST00000397449		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	FAM109B	chr22	42471656	+	RAI14	chr5	34686977	+
Frame-shit	ENST00000306320	ENST00000284268		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000306320	ENST00000535119		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
5CDS-intron	ENST00000306320	ENST00000503939		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
intron-3CDS	ENST00000399793	ENST00000284268		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
intron-intron	ENST00000399793	ENST00000535119		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
intron-intron	ENST00000399793	ENST00000503939		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
intron-3CDS	ENST00000509048	ENST00000284268		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
intron-intron	ENST00000509048	ENST00000535119		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
intron-intron	ENST00000509048	ENST00000503939		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	FAM134B	chr5	16565872	-	ANKH	chr5	14769300	-
In-frame	ENST00000324331	ENST00000330636		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000324331	ENST00000468929		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000324331	ENST00000464010		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000324331	ENST00000480566		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000324331	ENST00000500576		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000324331	ENST00000606472		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
In-frame	ENST00000274680	ENST00000330636		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000274680	ENST00000468929		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000274680	ENST00000464010		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000274680	ENST00000480566		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000274680	ENST00000500576		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
5CDS-intron	ENST00000274680	ENST00000606472		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	FARS2	chr6	5613553	+	LYRM4	chr6	5216971	-
Frame-shit	ENST00000446823	ENST00000423059		TCGA	RV	SKCM	TCGA-EB-A44R-06A	FOXK1	chr7	4780654	+	THSD7A	chr7	11422243	-
5CDS-intron	ENST00000446823	ENST00000480061		TCGA	RV	SKCM	TCGA-EB-A44R-06A	FOXK1	chr7	4780654	+	THSD7A	chr7	11422243	-
Frame-shit	ENST00000328914	ENST00000423059		TCGA	RV	SKCM	TCGA-EB-A44R-06A	FOXK1	chr7	4780654	+	THSD7A	chr7	11422243	-
5CDS-intron	ENST00000328914	ENST00000480061		TCGA	RV	SKCM	TCGA-EB-A44R-06A	FOXK1	chr7	4780654	+	THSD7A	chr7	11422243	-
5CDS-intron	ENST00000389266	ENST00000518136		TCGA	RV	SKCM	TCGA-3N-A9WB-06A	GARS	chr7	30651861	+	HOXA13	chr7	27238061	-
5CDS-intron	ENST00000389266	ENST00000222753		TCGA	RV	SKCM	TCGA-3N-A9WB-06A	GARS	chr7	30651861	+	HOXA13	chr7	27238061	-
Frame-shit	ENST00000228955	ENST00000405201		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000228955	ENST00000404621		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000228955	ENST00000404121		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000228955	ENST00000356219		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000228955	ENST00000397355		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000228955	ENST00000429285		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000543341	ENST00000405201		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000543341	ENST00000404621		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000543341	ENST00000404121		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000543341	ENST00000356219		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000543341	ENST00000397355		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
Frame-shit	ENST00000543341	ENST00000429285		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	GTF2H3	chr12	124130108	+	NCOR2	chr12	124862930	-
5CDS-5UTR	ENST00000503427	ENST00000438793		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000503427	ENST00000346918		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000503427	ENST00000379787		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000503427	ENST00000348126		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000503427	ENST00000304400		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000503427	ENST00000274392		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000503427	ENST00000455264		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000503427	ENST00000513648		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000502717	ENST00000438793		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000502717	ENST00000346918		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000502717	ENST00000379787		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-5UTR	ENST00000502717	ENST00000348126		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000502717	ENST00000304400		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000502717	ENST00000274392		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000502717	ENST00000455264		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
5CDS-intron	ENST00000502717	ENST00000513648		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102201527	+
Frame-shit	ENST00000371000	ENST00000336798		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
In-frame	ENST00000371000	ENST00000339394		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
5CDS-5UTR	ENST00000371000	ENST00000471567		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
Frame-shit	ENST00000262345	ENST00000336798		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
In-frame	ENST00000262345	ENST00000339394		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
5CDS-5UTR	ENST00000262345	ENST00000471567		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
Frame-shit	ENST00000541374	ENST00000336798		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
In-frame	ENST00000541374	ENST00000339394		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
5CDS-5UTR	ENST00000541374	ENST00000471567		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
Frame-shit	ENST00000544434	ENST00000336798		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
In-frame	ENST00000544434	ENST00000339394		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
5CDS-5UTR	ENST00000544434	ENST00000471567		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
intron-3CDS	ENST00000465396	ENST00000336798		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
intron-3CDS	ENST00000465396	ENST00000339394		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
intron-5UTR	ENST00000465396	ENST00000471567		TCGA	RV	SKCM	TCGA-ER-A2NG-06A	IL12RB2	chr1	67816772	+	SDC3	chr1	31350012	-
In-frame	ENST00000379719	ENST00000361367		TCGA	RV	SKCM	TCGA-WE-A8K5-06A	IPO7	chr11	9406394	+	CTR9	chr11	10774219	+
intron-3CDS	ENST00000533680	ENST00000361367		TCGA	RV	SKCM	TCGA-WE-A8K5-06A	IPO7	chr11	9406394	+	CTR9	chr11	10774219	+
5CDS-3UTR	ENST00000598205	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
5CDS-3UTR	ENST00000376970	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
5CDS-3UTR	ENST00000425460	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
5CDS-3UTR	ENST00000440075	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
5CDS-3UTR	ENST00000601313	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
5CDS-3UTR	ENST00000262269	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
5CDS-3UTR	ENST00000596571	ENST00000602139		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	MYH14	chr19	50721028	+	SIGLEC16	chr19	50476300	+
In-frame	ENST00000357731	ENST00000371204		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
5CDS-intron	ENST00000357731	ENST00000492633		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
intron-3CDS	ENST00000306821	ENST00000371204		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
intron-intron	ENST00000306821	ENST00000492633		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
In-frame	ENST00000434200	ENST00000371204		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
5CDS-intron	ENST00000434200	ENST00000492633		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
intron-3CDS	ENST00000467479	ENST00000371204		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
intron-intron	ENST00000467479	ENST00000492633		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	NEGR1	chr1	72748002	-	CYP2J2	chr1	60381772	-
In-frame	ENST00000282096	ENST00000377801		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	PDE3B	chr11	14889304	+	PLCXD3	chr5	41313872	-
In-frame	ENST00000282096	ENST00000328457		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	PDE3B	chr11	14889304	+	PLCXD3	chr5	41313872	-
In-frame	ENST00000455098	ENST00000377801		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	PDE3B	chr11	14889304	+	PLCXD3	chr5	41313872	-
In-frame	ENST00000455098	ENST00000328457		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	PDE3B	chr11	14889304	+	PLCXD3	chr5	41313872	-
intron-3CDS	ENST00000534317	ENST00000377801		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	PDE3B	chr11	14889304	+	PLCXD3	chr5	41313872	-
intron-3CDS	ENST00000534317	ENST00000328457		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	PDE3B	chr11	14889304	+	PLCXD3	chr5	41313872	-
Frame-shit	ENST00000536985	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000379789	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000540253	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000317350	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000379785	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000379782	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000360521	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
Frame-shit	ENST00000379775	ENST00000371030		TCGA	RV	SKCM	TCGA-ER-A196-01A	PFKFB3	chr10	6259154	+	ZNF831	chr20	57828033	+
In-frame	ENST00000283228	ENST00000314014		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
In-frame	ENST00000283228	ENST00000548364		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
5CDS-intron	ENST00000283228	ENST00000548913		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000440835	ENST00000314014		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000440835	ENST00000548364		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-intron	ENST00000440835	ENST00000548913		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000537619	ENST00000314014		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000537619	ENST00000548364		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-intron	ENST00000537619	ENST00000548913		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000378778	ENST00000314014		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000378778	ENST00000548364		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-intron	ENST00000378778	ENST00000548913		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
In-frame	ENST00000342084	ENST00000314014		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
In-frame	ENST00000342084	ENST00000548364		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
5CDS-intron	ENST00000342084	ENST00000548913		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000549308	ENST00000314014		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-3CDS	ENST00000549308	ENST00000548364		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
intron-intron	ENST00000549308	ENST00000548913		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	PTPRR	chr12	71158445	-	C12orf54	chr12	48880471	+
In-frame	ENST00000369485	ENST00000367800		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
Frame-shit	ENST00000369485	ENST00000457866		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-3UTR	ENST00000369485	ENST00000417892		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369485	ENST00000327035		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369485	ENST00000488690		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369485	ENST00000367798		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369485	ENST00000528103		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369485	ENST00000534469		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369485	ENST00000531527		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
In-frame	ENST00000265607	ENST00000367800		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
Frame-shit	ENST00000265607	ENST00000457866		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-3UTR	ENST00000265607	ENST00000417892		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000265607	ENST00000327035		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000265607	ENST00000488690		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000265607	ENST00000367798		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000265607	ENST00000528103		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000265607	ENST00000534469		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000265607	ENST00000531527		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
Frame-shit	ENST00000538899	ENST00000367800		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
Frame-shit	ENST00000538899	ENST00000457866		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-3UTR	ENST00000538899	ENST00000417892		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000538899	ENST00000327035		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000538899	ENST00000488690		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000538899	ENST00000367798		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000538899	ENST00000528103		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000538899	ENST00000534469		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000538899	ENST00000531527		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
In-frame	ENST00000369475	ENST00000367800		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
Frame-shit	ENST00000369475	ENST00000457866		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-3UTR	ENST00000369475	ENST00000417892		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369475	ENST00000327035		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369475	ENST00000488690		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369475	ENST00000367798		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369475	ENST00000528103		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369475	ENST00000534469		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
5CDS-intron	ENST00000369475	ENST00000531527		TCGA	RV	SKCM	TCGA-EE-A2A0-06A	RNGTT	chr6	89479493	-	AHI1	chr6	135606785	-
Frame-shit	ENST00000502346	ENST00000438793		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
Frame-shit	ENST00000502346	ENST00000346918		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5CDS-5UTR	ENST00000502346	ENST00000379787		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5CDS-5UTR	ENST00000502346	ENST00000348126		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5CDS-5UTR	ENST00000502346	ENST00000304400		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5CDS-5UTR	ENST00000502346	ENST00000274392		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5CDS-5UTR	ENST00000502346	ENST00000455264		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5CDS-intron	ENST00000502346	ENST00000513648		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-3CDS	ENST00000511450	ENST00000438793		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-3CDS	ENST00000511450	ENST00000346918		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-5UTR	ENST00000511450	ENST00000379787		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-5UTR	ENST00000511450	ENST00000348126		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-5UTR	ENST00000511450	ENST00000304400		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-5UTR	ENST00000511450	ENST00000274392		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-5UTR	ENST00000511450	ENST00000455264		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
5UTR-intron	ENST00000511450	ENST00000513648		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82357696	-	PAM	chr5	102295579	+
Frame-shit	ENST00000417545	ENST00000274181		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	TRIM48	chr11	55029787	+	ADAMTS16	chr5	5262770	+
5CDS-intron	ENST00000417545	ENST00000511368		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	TRIM48	chr11	55029787	+	ADAMTS16	chr5	5262770	+
5CDS-intron	ENST00000417545	ENST00000513709		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	TRIM48	chr11	55029787	+	ADAMTS16	chr5	5262770	+
Frame-shit	ENST00000250101	ENST00000007699		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000250101	ENST00000570627		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
intron-3CDS	ENST00000570330	ENST00000007699		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
intron-5UTR	ENST00000570330	ENST00000570627		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
Frame-shit	ENST00000574838	ENST00000007699		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
5CDS-5UTR	ENST00000574838	ENST00000570627		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
intron-3CDS	ENST00000577146	ENST00000007699		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
intron-5UTR	ENST00000577146	ENST00000570627		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7196857	-
5UTR-3CDS	ENST00000462705	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000462705	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000462705	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000393785	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000393785	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000393785	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000481632	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000481632	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000481632	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000471418	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000471418	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000471418	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000357258	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000357258	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000357258	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000464560	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000464560	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000464560	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000488663	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-3CDS	ENST00000488663	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
5UTR-intron	ENST00000488663	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000474710	ENST00000539563		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-3CDS	ENST00000474710	ENST00000490035		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
intron-intron	ENST00000474710	ENST00000498645		TCGA	RV	SKCM	TCGA-EE-A3J4-06A	ZBTB20	chr3	114619151	-	LSAMP	chr3	115529261	-
In-frame	ENST00000420843	ENST00000336898		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000376282		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000529095		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000526177		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000533784		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000529721		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000533805		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000443276		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
In-frame	ENST00000393505	ENST00000336898		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000376282		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000529095		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000526177		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000533784		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000529721		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000533805		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000443276		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
In-frame	ENST00000360025	ENST00000336898		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000376282		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000529095		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000526177		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000533784		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000529721		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000533805		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000443276		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	ARRB1	chr11	75062632	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000359314	ENST00000539068		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
5CDS-5UTR	ENST00000359314	ENST00000536438		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359314	ENST00000357266		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359314	ENST00000540787		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
5CDS-intron	ENST00000359314	ENST00000542713		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000486693	ENST00000539068		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
intron-5UTR	ENST00000486693	ENST00000536438		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000486693	ENST00000357266		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000486693	ENST00000540787		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
intron-intron	ENST00000486693	ENST00000542713		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CD2AP	chr6	47501491	+	FKBP5	chr6	35688325	-
3UTR-intron	ENST00000262982	ENST00000371917		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000262982	ENST00000493140		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000542325	ENST00000371917		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000542325	ENST00000493140		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000396192	ENST00000371917		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000396192	ENST00000493140		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000469700	ENST00000371917		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000469700	ENST00000493140		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	CSE1L	chr20	47713123	+	ARFGEF2	chr20	47615777	+
In-frame	ENST00000396821	ENST00000405237		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000396821	ENST00000312108		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000396821	ENST00000440709		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000396821	ENST00000360719		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000396821	ENST00000457250		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000396821	ENST00000434492		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000396821	ENST00000395650		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000405237		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000312108		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000440709		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000360719		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000457250		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000434492		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
intron-3CDS	ENST00000444597	ENST00000395650		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000405237		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000312108		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000440709		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000360719		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000457250		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000434492		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000381633	ENST00000395650		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000405237		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000312108		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000440709		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000360719		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000457250		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000434492		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
5UTR-3CDS	ENST00000432525	ENST00000395650		TCGA	RV	SKCM	TCGA-EE-A2MU-06A	DDX17	chr22	38894090	-	CPT1B	chr22	51010551	-
In-frame	ENST00000344450	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
In-frame	ENST00000344450	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5CDS-intron	ENST00000344450	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5CDS-5UTR	ENST00000344450	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000603453	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000603453	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-intron	ENST00000603453	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-5UTR	ENST00000603453	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000605315	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000605315	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-intron	ENST00000605315	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-5UTR	ENST00000605315	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
In-frame	ENST00000419235	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
In-frame	ENST00000419235	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5CDS-intron	ENST00000419235	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5CDS-5UTR	ENST00000419235	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5UTR-3CDS	ENST00000605035	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5UTR-3CDS	ENST00000605035	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5UTR-intron	ENST00000605035	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
5UTR-5UTR	ENST00000605035	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000605863	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000605863	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-intron	ENST00000605863	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-5UTR	ENST00000605863	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000603290	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000603290	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-intron	ENST00000603290	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-5UTR	ENST00000603290	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000604971	ENST00000155674		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-3CDS	ENST00000604971	ENST00000336737		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-intron	ENST00000604971	ENST00000399852		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
intron-5UTR	ENST00000604971	ENST00000480451		TCGA	RV	SKCM	TCGA-DA-A1I8-06A	DUSP22	chr6	311962	+	CECR5	chr22	17630635	-
Frame-shit	ENST00000360184	ENST00000422945		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000556068		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000554442		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000328724		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000350249		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000445439		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000334743		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000557095		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000556260		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000556946		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000360184	ENST00000557714		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000556791	ENST00000422945		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000556068		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000554442		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000328724		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000350249		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000445439		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000334743		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000557095		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000556260		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000556946		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556791	ENST00000557714		TCGA	RV	SKCM	TCGA-EE-A29D-06A	DYNC1H1	chr14	102458010	+	PPP2R5C	chr14	102323023	+
5CDS-3UTR	ENST00000504595	ENST00000460736		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000504595	ENST00000379619		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000504595	ENST00000264716		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
5CDS-5UTR	ENST00000504595	ENST00000545753		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-3UTR	ENST00000510662	ENST00000460736		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-3UTR	ENST00000510662	ENST00000379619		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-3UTR	ENST00000510662	ENST00000264716		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-5UTR	ENST00000510662	ENST00000545753		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-3UTR	ENST00000329673	ENST00000460736		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-3UTR	ENST00000329673	ENST00000379619		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-3UTR	ENST00000329673	ENST00000264716		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
intron-5UTR	ENST00000329673	ENST00000545753		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	FBXL7	chr5	15500822	+	FOSL2	chr2	28626974	+
Frame-shit	ENST00000298097	ENST00000507668		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000298097	ENST00000512972		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000298097	ENST00000509193		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000298097	ENST00000512721		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
5CDS-intron	ENST00000298097	ENST00000513907		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000554190	ENST00000507668		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000554190	ENST00000512972		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000554190	ENST00000509193		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
Frame-shit	ENST00000554190	ENST00000512721		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
5CDS-intron	ENST00000554190	ENST00000513907		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	FBXO33	chr14	39900768	-	SERINC5	chr5	79470870	-
intron-3CDS	ENST00000498088	ENST00000382778		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
intron-3CDS	ENST00000498088	ENST00000351808		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
intron-3CDS	ENST00000498088	ENST00000319980		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
intron-3CDS	ENST00000498088	ENST00000537103		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
intron-3UTR	ENST00000498088	ENST00000461115		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
In-frame	ENST00000304920	ENST00000382778		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
In-frame	ENST00000304920	ENST00000351808		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
In-frame	ENST00000304920	ENST00000319980		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
In-frame	ENST00000304920	ENST00000537103		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
5CDS-3UTR	ENST00000304920	ENST00000461115		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	IL17D	chr13	21278430	+	IFT88	chr13	21199889	+
In-frame	ENST00000231368	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
In-frame	ENST00000231368	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
In-frame	ENST00000231368	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
5CDS-5UTR	ENST00000231368	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
intron-3CDS	ENST00000395770	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
intron-3CDS	ENST00000395770	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
intron-3CDS	ENST00000395770	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
intron-5UTR	ENST00000395770	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
3UTR-3CDS	ENST00000395784	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
3UTR-3CDS	ENST00000395784	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
3UTR-3CDS	ENST00000395784	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
3UTR-5UTR	ENST00000395784	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A8GN-06A	LNPEP	chr5	96271878	+	FLT4	chr5	180048904	-
5UTR-3CDS	ENST00000362074	ENST00000367879		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000362074	ENST00000372212		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000362074	ENST00000462329		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000362074	ENST00000469256		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000362074	ENST00000470820		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000344859	ENST00000367879		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-3CDS	ENST00000344859	ENST00000372212		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000344859	ENST00000462329		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000344859	ENST00000469256		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
5UTR-intron	ENST00000344859	ENST00000470820		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000369340	ENST00000367879		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000369340	ENST00000372212		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-intron	ENST00000369340	ENST00000462329		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-intron	ENST00000369340	ENST00000469256		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-intron	ENST00000369340	ENST00000470820		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000479995	ENST00000367879		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000479995	ENST00000372212		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-intron	ENST00000479995	ENST00000462329		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-intron	ENST00000479995	ENST00000469256		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-intron	ENST00000479995	ENST00000470820		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	NOTCH2NL	chr1	145209436	+	UCK2	chr1	165859441	+
intron-3CDS	ENST00000337959	ENST00000216264		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000337959	ENST00000541677		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-intron	ENST00000337959	ENST00000471929		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000263246	ENST00000216264		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000263246	ENST00000541677		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-intron	ENST00000263246	ENST00000471929		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000407585	ENST00000216264		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000407585	ENST00000541677		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-intron	ENST00000407585	ENST00000471929		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
5UTR-3CDS	ENST00000403744	ENST00000216264		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
5UTR-3CDS	ENST00000403744	ENST00000541677		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
5UTR-intron	ENST00000403744	ENST00000471929		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000402229	ENST00000216264		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000402229	ENST00000541677		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-intron	ENST00000402229	ENST00000471929		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43342903	-	CERK	chr22	47083103	-
intron-3CDS	ENST00000332509	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000332509	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-intron	ENST00000332509	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000335539	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000335539	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-intron	ENST00000335539	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000402064	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000402064	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-intron	ENST00000402064	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000490473	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000490473	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-intron	ENST00000490473	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000436218	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000436218	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-intron	ENST00000436218	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000447598	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000447598	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-intron	ENST00000447598	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000435484	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000435484	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-intron	ENST00000435484	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000417303	ENST00000361906		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-3CDS	ENST00000417303	ENST00000361684		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
intron-intron	ENST00000417303	ENST00000504337		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PLA2G6	chr22	38577791	-	TMEM184B	chr22	38627340	-
5UTR-3CDS	ENST00000396000	ENST00000399782		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-3CDS	ENST00000396000	ENST00000317582		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000396000	ENST00000543133		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-intron	ENST00000396000	ENST00000538149		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000396000	ENST00000337612		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000396000	ENST00000493680		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000396000	ENST00000355028		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000396000	ENST00000418951		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-intron	ENST00000396000	ENST00000485631		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-3CDS	ENST00000262735	ENST00000399782		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-3CDS	ENST00000262735	ENST00000317582		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000262735	ENST00000543133		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-intron	ENST00000262735	ENST00000538149		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000262735	ENST00000337612		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000262735	ENST00000493680		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000262735	ENST00000355028		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000262735	ENST00000418951		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-intron	ENST00000262735	ENST00000485631		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-3CDS	ENST00000407236	ENST00000399782		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-3CDS	ENST00000407236	ENST00000317582		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000407236	ENST00000543133		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-intron	ENST00000407236	ENST00000538149		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000407236	ENST00000337612		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000407236	ENST00000493680		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000407236	ENST00000355028		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-5UTR	ENST00000407236	ENST00000418951		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
5UTR-intron	ENST00000407236	ENST00000485631		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-3CDS	ENST00000481567	ENST00000399782		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-3CDS	ENST00000481567	ENST00000317582		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000481567	ENST00000543133		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-intron	ENST00000481567	ENST00000538149		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000481567	ENST00000337612		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000481567	ENST00000493680		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000481567	ENST00000355028		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000481567	ENST00000418951		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-intron	ENST00000481567	ENST00000485631		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-3CDS	ENST00000402126	ENST00000399782		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-3CDS	ENST00000402126	ENST00000317582		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000402126	ENST00000543133		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-intron	ENST00000402126	ENST00000538149		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000402126	ENST00000337612		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000402126	ENST00000493680		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000402126	ENST00000355028		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000402126	ENST00000418951		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-intron	ENST00000402126	ENST00000485631		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-3CDS	ENST00000434345	ENST00000399782		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-3CDS	ENST00000434345	ENST00000317582		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000434345	ENST00000543133		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-intron	ENST00000434345	ENST00000538149		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000434345	ENST00000337612		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000434345	ENST00000493680		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000434345	ENST00000355028		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-5UTR	ENST00000434345	ENST00000418951		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
intron-intron	ENST00000434345	ENST00000485631		TCGA	RV	SKCM	TCGA-BF-AAOX-01A	PPARA	chr22	46547873	+	BCL2L13	chr22	18165980	+
In-frame	ENST00000306156	ENST00000230173		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
In-frame	ENST00000306156	ENST00000367608		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
In-frame	ENST00000306156	ENST00000296932		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
In-frame	ENST00000306156	ENST00000367609		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
5CDS-intron	ENST00000306156	ENST00000545477		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
3UTR-3CDS	ENST00000467135	ENST00000230173		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
3UTR-3CDS	ENST00000467135	ENST00000367608		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
3UTR-3CDS	ENST00000467135	ENST00000296932		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
3UTR-3CDS	ENST00000467135	ENST00000367609		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
3UTR-intron	ENST00000467135	ENST00000545477		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
intron-3CDS	ENST00000394874	ENST00000230173		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
intron-3CDS	ENST00000394874	ENST00000367608		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
intron-3CDS	ENST00000394874	ENST00000296932		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
intron-3CDS	ENST00000394874	ENST00000367609		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
intron-intron	ENST00000394874	ENST00000545477		TCGA	RV	SKCM	TCGA-EB-A6L9-06A	PRKCE	chr2	46070202	+	GPR126	chr6	142758571	+
Frame-shit	ENST00000248594	ENST00000517894		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PTPN12	chr7	77266365	+	BAI1	chr8	143599499	+
Frame-shit	ENST00000248594	ENST00000323289		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PTPN12	chr7	77266365	+	BAI1	chr8	143599499	+
Frame-shit	ENST00000415482	ENST00000517894		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PTPN12	chr7	77266365	+	BAI1	chr8	143599499	+
Frame-shit	ENST00000415482	ENST00000323289		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PTPN12	chr7	77266365	+	BAI1	chr8	143599499	+
Frame-shit	ENST00000435495	ENST00000517894		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PTPN12	chr7	77266365	+	BAI1	chr8	143599499	+
Frame-shit	ENST00000435495	ENST00000323289		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PTPN12	chr7	77266365	+	BAI1	chr8	143599499	+
In-frame	ENST00000507668	ENST00000513610		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000507668	ENST00000507288		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000507668	ENST00000274203		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000507668	ENST00000515803		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000507668	ENST00000427430		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000507668	ENST00000505695		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-5UTR	ENST00000507668	ENST00000512061		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
In-frame	ENST00000512972	ENST00000513610		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512972	ENST00000507288		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512972	ENST00000274203		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512972	ENST00000515803		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512972	ENST00000427430		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512972	ENST00000505695		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-5UTR	ENST00000512972	ENST00000512061		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
In-frame	ENST00000509193	ENST00000513610		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000509193	ENST00000507288		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000509193	ENST00000274203		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000509193	ENST00000515803		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000509193	ENST00000427430		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000509193	ENST00000505695		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-5UTR	ENST00000509193	ENST00000512061		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
In-frame	ENST00000512721	ENST00000513610		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512721	ENST00000507288		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512721	ENST00000274203		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512721	ENST00000515803		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512721	ENST00000427430		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-intron	ENST00000512721	ENST00000505695		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5CDS-5UTR	ENST00000512721	ENST00000512061		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-3CDS	ENST00000513907	ENST00000513610		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-intron	ENST00000513907	ENST00000507288		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-intron	ENST00000513907	ENST00000274203		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-intron	ENST00000513907	ENST00000515803		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-intron	ENST00000513907	ENST00000427430		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-intron	ENST00000513907	ENST00000505695		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
5UTR-5UTR	ENST00000513907	ENST00000512061		TCGA	RV	SKCM	TCGA-FW-A3I3-06A	SERINC5	chr5	79498705	-	MYO10	chr5	16704794	-
In-frame	ENST00000264554	ENST00000292363		TCGA	RV	SKCM	TCGA-ER-A19T-01A	SHC2	chr19	460529	-	RNF126	chr19	652884	-
In-frame	ENST00000320672	ENST00000215886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	SSBP2	chr5	80911292	-	LGALS2	chr22	37967938	-
In-frame	ENST00000509053	ENST00000215886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	SSBP2	chr5	80911292	-	LGALS2	chr22	37967938	-
In-frame	ENST00000514493	ENST00000215886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	SSBP2	chr5	80911292	-	LGALS2	chr22	37967938	-
intron-3CDS	ENST00000510060	ENST00000215886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	SSBP2	chr5	80911292	-	LGALS2	chr22	37967938	-
In-frame	ENST00000505980	ENST00000215886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	SSBP2	chr5	80911292	-	LGALS2	chr22	37967938	-
In-frame	ENST00000515395	ENST00000215886		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	SSBP2	chr5	80911292	-	LGALS2	chr22	37967938	-
Frame-shit	ENST00000396037	ENST00000541908		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
Frame-shit	ENST00000396037	ENST00000398864		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
Frame-shit	ENST00000396037	ENST00000266508		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
Frame-shit	ENST00000396037	ENST00000360995		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
In-frame	ENST00000539510	ENST00000541908		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
In-frame	ENST00000539510	ENST00000398864		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
In-frame	ENST00000539510	ENST00000266508		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
In-frame	ENST00000539510	ENST00000360995		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000536558	ENST00000541908		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000536558	ENST00000398864		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000536558	ENST00000266508		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000536558	ENST00000360995		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000404299	ENST00000541908		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000404299	ENST00000398864		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000404299	ENST00000266508		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000404299	ENST00000360995		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000381424	ENST00000541908		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000381424	ENST00000398864		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000381424	ENST00000266508		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
intron-3CDS	ENST00000381424	ENST00000360995		TCGA	RV	SKCM	TCGA-ER-A193-06A	ST8SIA1	chr12	22401940	-	AEBP2	chr12	19665332	+
Frame-shit	ENST00000346128	ENST00000272542		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
5CDS-intron	ENST00000346128	ENST00000480984		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
intron-3CDS	ENST00000400011	ENST00000272542		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
intron-intron	ENST00000400011	ENST00000480984		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
Frame-shit	ENST00000356107	ENST00000272542		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
5CDS-intron	ENST00000356107	ENST00000480984		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
Frame-shit	ENST00000545208	ENST00000272542		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
5CDS-intron	ENST00000545208	ENST00000480984		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
Frame-shit	ENST00000495972	ENST00000272542		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
5CDS-intron	ENST00000495972	ENST00000480984		TCGA	RV	SKCM	TCGA-ER-A197-06A	TJP1	chr15	30114205	-	SLC20A1	chr2	113405230	+
intron-3CDS	ENST00000301923	ENST00000381061		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-3CDS	ENST00000301923	ENST00000252934		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-intron	ENST00000301923	ENST00000498009		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-intron	ENST00000301923	ENST00000402380		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-3CDS	ENST00000402203	ENST00000381061		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-3CDS	ENST00000402203	ENST00000252934		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-intron	ENST00000402203	ENST00000498009		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-intron	ENST00000402203	ENST00000402380		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
In-frame	ENST00000454349	ENST00000381061		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
In-frame	ENST00000454349	ENST00000252934		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
5CDS-intron	ENST00000454349	ENST00000498009		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
5CDS-intron	ENST00000454349	ENST00000402380		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
In-frame	ENST00000335727	ENST00000381061		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
In-frame	ENST00000335727	ENST00000252934		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
5CDS-intron	ENST00000335727	ENST00000498009		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
5CDS-intron	ENST00000335727	ENST00000402380		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-3CDS	ENST00000497559	ENST00000381061		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-3CDS	ENST00000497559	ENST00000252934		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-intron	ENST00000497559	ENST00000498009		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
intron-intron	ENST00000497559	ENST00000402380		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	TNRC6B	chr22	40574144	+	ATXN10	chr22	46125305	+
In-frame	ENST00000258796	ENST00000357429		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
In-frame	ENST00000258796	ENST00000397100		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
In-frame	ENST00000258796	ENST00000397098		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
5CDS-5UTR	ENST00000258796	ENST00000488073		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
In-frame	ENST00000407643	ENST00000357429		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
In-frame	ENST00000407643	ENST00000397100		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
In-frame	ENST00000407643	ENST00000397098		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
5CDS-5UTR	ENST00000407643	ENST00000488073		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000403167	ENST00000357429		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000403167	ENST00000397100		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000403167	ENST00000397098		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-5UTR	ENST00000403167	ENST00000488073		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000477439	ENST00000357429		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000477439	ENST00000397100		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000477439	ENST00000397098		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
intron-5UTR	ENST00000477439	ENST00000488073		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	C7orf50	chr7	1049779	-
5CDS-intron	ENST00000371756	ENST00000449833		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000409161		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000423696		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000338508		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000409530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000449116		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000357171		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5CDS-intron	ENST00000371756	ENST00000468619		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000449833		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000409161		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000423696		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000338508		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000409530		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000449116		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000357171		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
intron-intron	ENST00000465873	ENST00000468619		TCGA	RV	SKCM	TCGA-ER-A19T-01A	UBAC1	chr9	138852871	-	SHANK2	chr11	70935842	-
5UTR-3CDS	ENST00000334512	ENST00000449107		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
5UTR-3CDS	ENST00000334512	ENST00000303498		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
5UTR-3CDS	ENST00000334512	ENST00000437172		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
5UTR-5UTR	ENST00000334512	ENST00000383778		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
5UTR-3UTR	ENST00000334512	ENST00000482824		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3CDS	ENST00000478357	ENST00000449107		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3CDS	ENST00000478357	ENST00000303498		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3CDS	ENST00000478357	ENST00000437172		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-5UTR	ENST00000478357	ENST00000383778		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3UTR	ENST00000478357	ENST00000482824		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3CDS	ENST00000446377	ENST00000449107		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3CDS	ENST00000446377	ENST00000303498		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3CDS	ENST00000446377	ENST00000437172		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-5UTR	ENST00000446377	ENST00000383778		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
intron-3UTR	ENST00000446377	ENST00000482824		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZMIZ1	chr10	80921890	+	BTD	chr3	15676931	+
In-frame	ENST00000216254	ENST00000505113		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
In-frame	ENST00000216254	ENST00000316418		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5CDS-5UTR	ENST00000216254	ENST00000512529		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000216254	ENST00000515206		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000216254	ENST00000506456		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
In-frame	ENST00000396512	ENST00000505113		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
In-frame	ENST00000396512	ENST00000316418		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5CDS-5UTR	ENST00000396512	ENST00000512529		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000396512	ENST00000515206		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5CDS-intron	ENST00000396512	ENST00000506456		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
intron-3CDS	ENST00000466237	ENST00000505113		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
intron-3CDS	ENST00000466237	ENST00000316418		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
intron-5UTR	ENST00000466237	ENST00000512529		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
intron-intron	ENST00000466237	ENST00000515206		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
intron-intron	ENST00000466237	ENST00000506456		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	ACO2	chr22	41865186	+	AHRR	chr5	422844	+
5UTR-3CDS	ENST00000396029	ENST00000395863		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-3CDS	ENST00000396029	ENST00000395864		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-3CDS	ENST00000396029	ENST00000450594		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-intron	ENST00000396029	ENST00000460817		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-3CDS	ENST00000396032	ENST00000395863		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-3CDS	ENST00000396032	ENST00000395864		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-3CDS	ENST00000396032	ENST00000450594		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
5UTR-intron	ENST00000396032	ENST00000460817		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-3CDS	ENST00000371602	ENST00000395863		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-3CDS	ENST00000371602	ENST00000395864		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-3CDS	ENST00000371602	ENST00000450594		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-intron	ENST00000371602	ENST00000460817		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-3CDS	ENST00000349014	ENST00000395863		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-3CDS	ENST00000349014	ENST00000395864		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-3CDS	ENST00000349014	ENST00000450594		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
intron-intron	ENST00000349014	ENST00000460817		TCGA	RV	SKCM	TCGA-ER-A196-01A	ADNP	chr20	49547363	-	BMP7	chr20	55803477	-
In-frame	ENST00000336199	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
In-frame	ENST00000336199	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000336199	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000336199	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000336199	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000336199	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
In-frame	ENST00000366540	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
In-frame	ENST00000366540	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366540	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366540	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366540	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366540	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
Frame-shit	ENST00000366539	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
Frame-shit	ENST00000366539	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366539	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366539	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366539	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000366539	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
In-frame	ENST00000263826	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
In-frame	ENST00000263826	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000263826	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000263826	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000263826	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5CDS-intron	ENST00000263826	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5UTR-3CDS	ENST00000492957	ENST00000283228		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5UTR-3CDS	ENST00000492957	ENST00000440835		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5UTR-intron	ENST00000492957	ENST00000537619		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5UTR-intron	ENST00000492957	ENST00000378778		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5UTR-intron	ENST00000492957	ENST00000342084		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
5UTR-intron	ENST00000492957	ENST00000549308		TCGA	RV	SKCM	TCGA-ER-A197-06A	AKT3	chr1	243776973	-	PTPRR	chr12	71078044	-
intron-3CDS	ENST00000556611	ENST00000539563		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000556611	ENST00000490035		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
intron-intron	ENST00000556611	ENST00000498645		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000539826	ENST00000539563		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
intron-3CDS	ENST00000539826	ENST00000490035		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
intron-intron	ENST00000539826	ENST00000498645		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
In-frame	ENST00000396582	ENST00000539563		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000396582	ENST00000490035		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000396582	ENST00000498645		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-3CDS	ENST00000432921	ENST00000539563		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-3CDS	ENST00000432921	ENST00000490035		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-intron	ENST00000432921	ENST00000498645		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-3CDS	ENST00000345122	ENST00000539563		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-3CDS	ENST00000345122	ENST00000490035		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-intron	ENST00000345122	ENST00000498645		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-3CDS	ENST00000433497	ENST00000539563		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-3CDS	ENST00000433497	ENST00000490035		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
5UTR-intron	ENST00000433497	ENST00000498645		TCGA	RV	SKCM	TCGA-GF-A6C9-06A	ARHGAP5	chr14	32546641	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000442713	ENST00000569532		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
Frame-shit	ENST00000442713	ENST00000304381		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
Frame-shit	ENST00000442713	ENST00000421369		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
5CDS-intron	ENST00000442713	ENST00000561963		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
Frame-shit	ENST00000269445	ENST00000569532		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
Frame-shit	ENST00000269445	ENST00000304381		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
Frame-shit	ENST00000269445	ENST00000421369		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
5CDS-intron	ENST00000269445	ENST00000561963		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-3CDS	ENST00000584977	ENST00000569532		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-3CDS	ENST00000584977	ENST00000304381		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-3CDS	ENST00000584977	ENST00000421369		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-intron	ENST00000584977	ENST00000561963		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-3CDS	ENST00000578396	ENST00000569532		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-3CDS	ENST00000578396	ENST00000304381		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-3CDS	ENST00000578396	ENST00000421369		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
intron-intron	ENST00000578396	ENST00000561963		TCGA	RV	SKCM	TCGA-ER-A196-01A	DYM	chr18	46783380	-	TMC7	chr16	19051611	+
5CDS-5UTR	ENST00000284037	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000284037	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000284037	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000284037	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380943	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380943	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380943	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000380943	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000416865	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000416865	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000416865	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000416865	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380935	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380935	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380935	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000380935	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380939	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380939	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380939	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000380939	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380936	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380936	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380936	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000380936	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380938	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380938	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000380938	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000380938	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000511297	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000511297	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000511297	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000511297	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000506030	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000506030	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000506030	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000506030	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000508515	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000508515	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-5UTR	ENST00000508515	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5CDS-intron	ENST00000508515	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
intron-5UTR	ENST00000503913	ENST00000502271		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
intron-5UTR	ENST00000503913	ENST00000504924		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
intron-5UTR	ENST00000503913	ENST00000510591		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
intron-intron	ENST00000503913	ENST00000507646		TCGA	RV	SKCM	TCGA-D3-A1Q5-06A	ERBB2IP	chr5	65310553	+	ARL15	chr5	53182543	-
5UTR-3CDS	ENST00000602377	ENST00000344204		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-3CDS	ENST00000602377	ENST00000537187		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-3CDS	ENST00000602377	ENST00000509967		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-intron	ENST00000602377	ENST00000515710		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-intron	ENST00000602377	ENST00000344135		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-3CDS	ENST00000268797	ENST00000344204		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-3CDS	ENST00000268797	ENST00000537187		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-3CDS	ENST00000268797	ENST00000509967		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-intron	ENST00000268797	ENST00000515710		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
5UTR-intron	ENST00000268797	ENST00000344135		TCGA	RV	SKCM	TCGA-GN-A264-06A	GFOD2	chr16	67753066	-	TRIO	chr5	14270934	+
Frame-shit	ENST00000357308	ENST00000410022		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000357308	ENST00000471185		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000357308	ENST00000303698		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000357308	ENST00000394305		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000357308	ENST00000462320		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
Frame-shit	ENST00000361060	ENST00000410022		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000361060	ENST00000471185		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000361060	ENST00000303698		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000361060	ENST00000394305		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5CDS-5UTR	ENST00000361060	ENST00000462320		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5UTR-3CDS	ENST00000494201	ENST00000410022		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5UTR-5UTR	ENST00000494201	ENST00000471185		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5UTR-5UTR	ENST00000494201	ENST00000303698		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5UTR-5UTR	ENST00000494201	ENST00000394305		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
5UTR-5UTR	ENST00000494201	ENST00000462320		TCGA	RV	SKCM	TCGA-GN-A266-06A	GFPT1	chr2	69614197	-	NFU1	chr2	69633214	-
In-frame	ENST00000470487	ENST00000264674		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000470487	ENST00000392736		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000470487	ENST00000464456		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000470487	ENST00000472280		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000470487	ENST00000494292		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000470487	ENST00000468789		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-intron	ENST00000470487	ENST00000460814		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000470487	ENST00000433243		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-intron	ENST00000470487	ENST00000485957		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
In-frame	ENST00000309027	ENST00000264674		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000309027	ENST00000392736		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000309027	ENST00000464456		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000309027	ENST00000472280		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000309027	ENST00000494292		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000309027	ENST00000468789		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-intron	ENST00000309027	ENST00000460814		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000309027	ENST00000433243		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
5CDS-intron	ENST00000309027	ENST00000485957		TCGA	RV	SKCM	TCGA-W3-A828-06A	GOLIM4	chr3	167742314	-	MECOM	chr3	168861620	-
Frame-shit	ENST00000403681	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000403681	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000403681	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000541363	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000541363	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000541363	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000393577	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000393577	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000393577	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000393578	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000393578	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000393578	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000425208	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000425208	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000425208	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000536545	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000536545	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000536545	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000354636	ENST00000370314		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000354636	ENST00000535043		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
5CDS-intron	ENST00000354636	ENST00000497894		TCGA	RV	SKCM	TCGA-GN-A26D-06A	HMGA2	chr12	66232349	+	GABRA3	chrX	151393317	-
Frame-shit	ENST00000541515	ENST00000513874		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	LUC7L2	chr7	139092096	+	IGSF22	chr11	18738547	-
5CDS-intron	ENST00000541515	ENST00000510673		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	LUC7L2	chr7	139092096	+	IGSF22	chr11	18738547	-
Frame-shit	ENST00000264819	ENST00000264554		TCGA	RV	SKCM	TCGA-GN-A265-06A	MIER2	chr19	311845	-	SHC2	chr19	425231	-
intron-3CDS	ENST00000592722	ENST00000264554		TCGA	RV	SKCM	TCGA-GN-A265-06A	MIER2	chr19	311845	-	SHC2	chr19	425231	-
5UTR-5UTR	ENST00000337959	ENST00000265109		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000337959	ENST00000512629		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000337959	ENST00000428746		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000337959	ENST00000503673		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000337959	ENST00000515799		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-intron	ENST00000337959	ENST00000506376		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-intron	ENST00000337959	ENST00000507276		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-intron	ENST00000337959	ENST00000397449		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000263246	ENST00000265109		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000263246	ENST00000512629		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000263246	ENST00000428746		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000263246	ENST00000503673		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-5UTR	ENST00000263246	ENST00000515799		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-intron	ENST00000263246	ENST00000506376		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-intron	ENST00000263246	ENST00000507276		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
5UTR-intron	ENST00000263246	ENST00000397449		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000407585	ENST00000265109		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000407585	ENST00000512629		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000407585	ENST00000428746		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000407585	ENST00000503673		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000407585	ENST00000515799		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000407585	ENST00000506376		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000407585	ENST00000507276		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000407585	ENST00000397449		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000403744	ENST00000265109		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000403744	ENST00000512629		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000403744	ENST00000428746		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000403744	ENST00000503673		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000403744	ENST00000515799		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000403744	ENST00000506376		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000403744	ENST00000507276		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000403744	ENST00000397449		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000402229	ENST00000265109		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000402229	ENST00000512629		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000402229	ENST00000428746		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000402229	ENST00000503673		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-5UTR	ENST00000402229	ENST00000515799		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000402229	ENST00000506376		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000402229	ENST00000507276		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
intron-intron	ENST00000402229	ENST00000397449		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	PACSIN2	chr22	43411027	-	RAI14	chr5	34686977	+
Frame-shit	ENST00000536534	ENST00000283243		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
Frame-shit	ENST00000536534	ENST00000392771		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
5CDS-intron	ENST00000536534	ENST00000460710		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
intron-3CDS	ENST00000427495	ENST00000283243		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
intron-3CDS	ENST00000427495	ENST00000392771		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
intron-intron	ENST00000427495	ENST00000460710		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
5UTR-3CDS	ENST00000442594	ENST00000283243		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
5UTR-3CDS	ENST00000442594	ENST00000392771		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
5UTR-intron	ENST00000442594	ENST00000460710		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
intron-3CDS	ENST00000474177	ENST00000283243		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
intron-3CDS	ENST00000474177	ENST00000392771		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
intron-intron	ENST00000474177	ENST00000460710		TCGA	RV	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160808089	-
In-frame	ENST00000380737	ENST00000521861		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	PPP2R2A	chr8	26151256	+	EIF3H	chr8	117671219	-
In-frame	ENST00000380737	ENST00000276682		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	PPP2R2A	chr8	26151256	+	EIF3H	chr8	117671219	-
In-frame	ENST00000315985	ENST00000521861		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	PPP2R2A	chr8	26151256	+	EIF3H	chr8	117671219	-
In-frame	ENST00000315985	ENST00000276682		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	PPP2R2A	chr8	26151256	+	EIF3H	chr8	117671219	-
3UTR-3CDS	ENST00000523473	ENST00000521861		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	PPP2R2A	chr8	26151256	+	EIF3H	chr8	117671219	-
3UTR-3CDS	ENST00000523473	ENST00000276682		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	PPP2R2A	chr8	26151256	+	EIF3H	chr8	117671219	-
5CDS-intron	ENST00000267163	ENST00000495013		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
5CDS-intron	ENST00000267163	ENST00000258648		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
5CDS-5UTR	ENST00000267163	ENST00000378586		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
intron-intron	ENST00000484879	ENST00000495013		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
intron-intron	ENST00000484879	ENST00000258648		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
intron-5UTR	ENST00000484879	ENST00000378586		TCGA	RV	SKCM	TCGA-FW-A5DX-01A	RB1	chr13	48916850	+	MED4	chr13	48664554	-
Frame-shit	ENST00000308488	ENST00000420843		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000308488	ENST00000393505		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000308488	ENST00000360025		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000360355	ENST00000420843		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000360355	ENST00000393505		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000360355	ENST00000360025		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000480887	ENST00000420843		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000480887	ENST00000393505		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000480887	ENST00000360025		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
intron-3CDS	ENST00000530604	ENST00000420843		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
intron-3CDS	ENST00000530604	ENST00000393505		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
intron-3CDS	ENST00000530604	ENST00000360025		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	RSF1	chr11	77383087	-	ARRB1	chr11	75001083	-
In-frame	ENST00000300737	ENST00000336615		TCGA	RV	SKCM	TCGA-GN-A8LK-06A	STIM1	chr11	3877639	+	PNPLA2	chr11	821628	+
In-frame	ENST00000527651	ENST00000336615		TCGA	RV	SKCM	TCGA-GN-A8LK-06A	STIM1	chr11	3877639	+	PNPLA2	chr11	821628	+
intron-3CDS	ENST00000527484	ENST00000336615		TCGA	RV	SKCM	TCGA-GN-A8LK-06A	STIM1	chr11	3877639	+	PNPLA2	chr11	821628	+
intron-3CDS	ENST00000533977	ENST00000336615		TCGA	RV	SKCM	TCGA-GN-A8LK-06A	STIM1	chr11	3877639	+	PNPLA2	chr11	821628	+
In-frame	ENST00000258796	ENST00000306729		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
In-frame	ENST00000258796	ENST00000306739		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
In-frame	ENST00000258796	ENST00000580534		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000258796	ENST00000581647		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000258796	ENST00000582404		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
In-frame	ENST00000407643	ENST00000306729		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
In-frame	ENST00000407643	ENST00000306739		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
In-frame	ENST00000407643	ENST00000580534		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000407643	ENST00000581647		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
5CDS-intron	ENST00000407643	ENST00000582404		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-3CDS	ENST00000403167	ENST00000306729		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-3CDS	ENST00000403167	ENST00000306739		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-3CDS	ENST00000403167	ENST00000580534		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-intron	ENST00000403167	ENST00000581647		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-intron	ENST00000403167	ENST00000582404		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-3CDS	ENST00000477439	ENST00000306729		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-3CDS	ENST00000477439	ENST00000306739		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-3CDS	ENST00000477439	ENST00000580534		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-intron	ENST00000477439	ENST00000581647		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
intron-intron	ENST00000477439	ENST00000582404		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	ASPSCR1	chr17	79966913	+
Frame-shit	ENST00000262144	ENST00000394156		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
5CDS-intron	ENST00000262144	ENST00000268603		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
5CDS-intron	ENST00000262144	ENST00000566827		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
5CDS-intron	ENST00000262144	ENST00000569624		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
intron-3CDS	ENST00000562331	ENST00000394156		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
intron-intron	ENST00000562331	ENST00000268603		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
intron-intron	ENST00000562331	ENST00000566827		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
intron-intron	ENST00000562331	ENST00000569624		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	CDH11	chr16	64982690	-
Frame-shit	ENST00000252699	ENST00000593149		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
Frame-shit	ENST00000252699	ENST00000248342		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000252699	ENST00000593062		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000252699	ENST00000538434		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000252699	ENST00000588934		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000252699	ENST00000545173		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000252699	ENST00000592558		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
Frame-shit	ENST00000424234	ENST00000593149		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
Frame-shit	ENST00000424234	ENST00000248342		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000424234	ENST00000593062		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000424234	ENST00000538434		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000424234	ENST00000588934		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000424234	ENST00000545173		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000424234	ENST00000592558		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
Frame-shit	ENST00000390009	ENST00000593149		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
Frame-shit	ENST00000390009	ENST00000248342		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000390009	ENST00000593062		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000390009	ENST00000538434		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000390009	ENST00000588934		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000390009	ENST00000545173		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-intron	ENST00000390009	ENST00000592558		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-3CDS	ENST00000497637	ENST00000593149		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-3CDS	ENST00000497637	ENST00000248342		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-intron	ENST00000497637	ENST00000593062		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-intron	ENST00000497637	ENST00000538434		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-intron	ENST00000497637	ENST00000588934		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-intron	ENST00000497637	ENST00000545173		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
intron-intron	ENST00000497637	ENST00000592558		TCGA	RV	SKCM	TCGA-GN-A268-06A	ACTN4	chr19	39138547	+	EIF3K	chr19	39125633	+
5CDS-3UTR	ENST00000372309	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5CDS-3UTR	ENST00000372302	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5CDS-3UTR	ENST00000247291	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5CDS-3UTR	ENST00000372300	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
3UTR-3UTR	ENST00000472942	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5CDS-3UTR	ENST00000372298	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5UTR-3UTR	ENST00000372297	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5CDS-3UTR	ENST00000372312	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5UTR-3UTR	ENST00000372301	ENST00000432424		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	AIF1L	chr9	133987050	+	SYN2	chr3	12203046	+
5CDS-5UTR	ENST00000420843	ENST00000356341		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000420843	ENST00000530617		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000420843	ENST00000278568		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-intron	ENST00000420843	ENST00000528203		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-intron	ENST00000420843	ENST00000525542		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000393505	ENST00000356341		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000393505	ENST00000530617		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000393505	ENST00000278568		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-intron	ENST00000393505	ENST00000528203		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-intron	ENST00000393505	ENST00000525542		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000360025	ENST00000356341		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000360025	ENST00000530617		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-5UTR	ENST00000360025	ENST00000278568		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-intron	ENST00000360025	ENST00000528203		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
5CDS-intron	ENST00000360025	ENST00000525542		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	74993006	-	PAK1	chr11	77103583	-
3UTR-3CDS	ENST00000342412	ENST00000396868		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-5UTR	ENST00000342412	ENST00000414144		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-5UTR	ENST00000342412	ENST00000396871		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-intron	ENST00000342412	ENST00000431561		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-intron	ENST00000342412	ENST00000396870		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-intron	ENST00000342412	ENST00000575948		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-3CDS	ENST00000217169	ENST00000396868		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-5UTR	ENST00000217169	ENST00000414144		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-5UTR	ENST00000217169	ENST00000396871		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-intron	ENST00000217169	ENST00000431561		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-intron	ENST00000217169	ENST00000396870		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
3UTR-intron	ENST00000217169	ENST00000575948		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
Frame-shit	ENST00000395306	ENST00000396868		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000395306	ENST00000414144		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
5CDS-5UTR	ENST00000395306	ENST00000396871		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000395306	ENST00000431561		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000395306	ENST00000396870		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
5CDS-intron	ENST00000395306	ENST00000575948		TCGA	RV	SKCM	TCGA-EE-A2GK-06A	BIRC7	chr20	61870962	+	ZNF200	chr16	3285360	-
Frame-shit	ENST00000420329	ENST00000268182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5CDS-intron	ENST00000420329	ENST00000560738		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5CDS-intron	ENST00000420329	ENST00000560020		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
Frame-shit	ENST00000560098	ENST00000268182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5CDS-intron	ENST00000560098	ENST00000560738		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5CDS-intron	ENST00000560098	ENST00000560020		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
Frame-shit	ENST00000268184	ENST00000268182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5CDS-intron	ENST00000268184	ENST00000560738		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5CDS-intron	ENST00000268184	ENST00000560020		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
3UTR-3CDS	ENST00000558619	ENST00000268182		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
3UTR-intron	ENST00000558619	ENST00000560738		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
3UTR-intron	ENST00000558619	ENST00000560020		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	CRTC3	chr15	91083369	+	IQGAP1	chr15	90982564	+
5UTR-5UTR	ENST00000220003	ENST00000388942		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
5UTR-intron	ENST00000220003	ENST00000559079		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
5UTR-5UTR	ENST00000439220	ENST00000388942		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
5UTR-intron	ENST00000439220	ENST00000559079		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
intron-5UTR	ENST00000567571	ENST00000388942		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
intron-intron	ENST00000567571	ENST00000559079		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
intron-5UTR	ENST00000309470	ENST00000388942		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
intron-intron	ENST00000309470	ENST00000559079		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CSK	chr15	75075061	+	C15orf27	chr15	76426509	+
5CDS-5UTR	ENST00000310193	ENST00000260128		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
5CDS-5UTR	ENST00000310193	ENST00000458141		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
5CDS-5UTR	ENST00000310193	ENST00000402687		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
5CDS-5UTR	ENST00000310193	ENST00000419716		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
5CDS-intron	ENST00000310193	ENST00000521946		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
intron-5UTR	ENST00000523954	ENST00000260128		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
intron-5UTR	ENST00000523954	ENST00000458141		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
intron-5UTR	ENST00000523954	ENST00000402687		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
intron-5UTR	ENST00000523954	ENST00000419716		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
intron-intron	ENST00000523954	ENST00000521946		TCGA	RV	SKCM	TCGA-WE-AAA3-06A	CYP7B1	chr8	65711023	-	SULF1	chr8	70475774	+
In-frame	ENST00000373314	ENST00000383018		TCGA	RV	SKCM	TCGA-D3-A8GC-06A	FAM129B	chr9	130279136	-	SNRNP25	chr16	105777	+
5CDS-intron	ENST00000373314	ENST00000493672		TCGA	RV	SKCM	TCGA-D3-A8GC-06A	FAM129B	chr9	130279136	-	SNRNP25	chr16	105777	+
In-frame	ENST00000373312	ENST00000383018		TCGA	RV	SKCM	TCGA-D3-A8GC-06A	FAM129B	chr9	130279136	-	SNRNP25	chr16	105777	+
5CDS-intron	ENST00000373312	ENST00000493672		TCGA	RV	SKCM	TCGA-D3-A8GC-06A	FAM129B	chr9	130279136	-	SNRNP25	chr16	105777	+
intron-3CDS	ENST00000468379	ENST00000383018		TCGA	RV	SKCM	TCGA-D3-A8GC-06A	FAM129B	chr9	130279136	-	SNRNP25	chr16	105777	+
intron-intron	ENST00000468379	ENST00000493672		TCGA	RV	SKCM	TCGA-D3-A8GC-06A	FAM129B	chr9	130279136	-	SNRNP25	chr16	105777	+
5CDS-3UTR	ENST00000335255	ENST00000525951		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	FOXK2	chr17	80521424	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000335255	ENST00000537076		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	FOXK2	chr17	80521424	+	MS4A12	chr11	60264786	+
5CDS-5UTR	ENST00000335255	ENST00000016913		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	FOXK2	chr17	80521424	+	MS4A12	chr11	60264786	+
intron-3UTR	ENST00000529652	ENST00000525951		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	FOXK2	chr17	80521424	+	MS4A12	chr11	60264786	+
intron-5UTR	ENST00000529652	ENST00000537076		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	FOXK2	chr17	80521424	+	MS4A12	chr11	60264786	+
intron-5UTR	ENST00000529652	ENST00000016913		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	FOXK2	chr17	80521424	+	MS4A12	chr11	60264786	+
Frame-shit	ENST00000309971	ENST00000372870		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
Frame-shit	ENST00000309971	ENST00000300456		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
Frame-shit	ENST00000372770	ENST00000372870		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
Frame-shit	ENST00000372770	ENST00000300456		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
5UTR-3CDS	ENST00000539582	ENST00000372870		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
5UTR-3CDS	ENST00000539582	ENST00000300456		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
intron-3CDS	ENST00000494417	ENST00000372870		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
intron-3CDS	ENST00000494417	ENST00000300456		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	GLE1	chr9	131271376	+	SLC27A4	chr9	131117677	+
intron-3CDS	ENST00000377791	ENST00000296861		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	HIST1H2AC	chr6	26124977	+	TNFRSF21	chr6	47254331	-
intron-3CDS	ENST00000602637	ENST00000296861		TCGA	RV	SKCM	TCGA-FS-A1ZT-06A	HIST1H2AC	chr6	26124977	+	TNFRSF21	chr6	47254331	-
In-frame	ENST00000534064	ENST00000299626		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
In-frame	ENST00000534064	ENST00000376156		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
5CDS-5UTR	ENST00000534064	ENST00000532552		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
intron-3CDS	ENST00000535943	ENST00000299626		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
intron-3CDS	ENST00000535943	ENST00000376156		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
intron-5UTR	ENST00000535943	ENST00000532552		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
5UTR-3CDS	ENST00000525931	ENST00000299626		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
5UTR-3CDS	ENST00000525931	ENST00000376156		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
5UTR-5UTR	ENST00000525931	ENST00000532552		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
In-frame	ENST00000529807	ENST00000299626		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
In-frame	ENST00000529807	ENST00000376156		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
5CDS-5UTR	ENST00000529807	ENST00000532552		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
intron-3CDS	ENST00000527522	ENST00000299626		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
intron-3CDS	ENST00000527522	ENST00000376156		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
intron-5UTR	ENST00000527522	ENST00000532552		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77820627	-
Frame-shit	ENST00000399788	ENST00000538872		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
Frame-shit	ENST00000399788	ENST00000326261		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
Frame-shit	ENST00000399788	ENST00000382841		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
5CDS-intron	ENST00000399788	ENST00000537151		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
intron-3CDS	ENST00000540838	ENST00000538872		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
intron-3CDS	ENST00000540838	ENST00000326261		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
intron-3CDS	ENST00000540838	ENST00000382841		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
intron-intron	ENST00000540838	ENST00000537151		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
Frame-shit	ENST00000382815	ENST00000538872		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
Frame-shit	ENST00000382815	ENST00000326261		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
Frame-shit	ENST00000382815	ENST00000382841		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
5CDS-intron	ENST00000382815	ENST00000537151		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	KDM5A	chr12	442653	-	IQSEC3	chr12	266191	+
Frame-shit	ENST00000360614	ENST00000520753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000360614	ENST00000521613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000360614	ENST00000519940		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000519332		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000520007		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000600800		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000357778		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000391898		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000359009		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000447740		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000520153		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000520015		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000360614	ENST00000522431		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
In-frame	ENST00000585374	ENST00000520753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
In-frame	ENST00000585374	ENST00000521613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
In-frame	ENST00000585374	ENST00000519940		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000519332		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000520007		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000600800		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000357778		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000391898		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000359009		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000447740		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000520153		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000520015		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000585374	ENST00000522431		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000593119	ENST00000520753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000593119	ENST00000521613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000593119	ENST00000519940		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000519332		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000520007		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000600800		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000357778		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000391898		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000359009		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000447740		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000520153		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000520015		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000593119	ENST00000522431		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-3CDS	ENST00000540670	ENST00000520753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-3CDS	ENST00000540670	ENST00000521613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-3CDS	ENST00000540670	ENST00000519940		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000519332		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000520007		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000600800		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000357778		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000391898		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000359009		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000447740		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000520153		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000520015		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
intron-intron	ENST00000540670	ENST00000522431		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000590729	ENST00000520753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000590729	ENST00000521613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
Frame-shit	ENST00000590729	ENST00000519940		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000519332		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000520007		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000600800		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000357778		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000391898		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000359009		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000447740		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000520153		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000520015		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5CDS-intron	ENST00000590729	ENST00000522431		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-3CDS	ENST00000590511	ENST00000520753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-3CDS	ENST00000590511	ENST00000521613		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-3CDS	ENST00000590511	ENST00000519940		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000519332		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000520007		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000600800		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000357778		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000391898		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000359009		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000447740		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000520153		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000520015		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
5UTR-intron	ENST00000590511	ENST00000522431		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	LONP1	chr19	5719715	-	CARD8	chr19	48718641	-
In-frame	ENST00000378101	ENST00000389617		TCGA	RV	SKCM	TCGA-EB-A44R-06A	NEK3	chr13	52722550	-	GXYLT2	chr3	73006380	+
In-frame	ENST00000339406	ENST00000389617		TCGA	RV	SKCM	TCGA-EB-A44R-06A	NEK3	chr13	52722550	-	GXYLT2	chr3	73006380	+
In-frame	ENST00000452082	ENST00000389617		TCGA	RV	SKCM	TCGA-EB-A44R-06A	NEK3	chr13	52722550	-	GXYLT2	chr3	73006380	+
In-frame	ENST00000400357	ENST00000389617		TCGA	RV	SKCM	TCGA-EB-A44R-06A	NEK3	chr13	52722550	-	GXYLT2	chr3	73006380	+
In-frame	ENST00000361439	ENST00000395762		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
In-frame	ENST00000361439	ENST00000543915		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
5CDS-intron	ENST00000361439	ENST00000449195		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
5CDS-intron	ENST00000361439	ENST00000380922		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
5CDS-intron	ENST00000361439	ENST00000170630		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
5CDS-3UTR	ENST00000361439	ENST00000565915		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
intron-3CDS	ENST00000565384	ENST00000395762		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
intron-3CDS	ENST00000565384	ENST00000543915		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
intron-intron	ENST00000565384	ENST00000449195		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
intron-intron	ENST00000565384	ENST00000380922		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
intron-intron	ENST00000565384	ENST00000170630		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
intron-3UTR	ENST00000565384	ENST00000565915		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	NSMCE1	chr16	27268756	-	IL4R	chr16	27367129	+
5CDS-intron	ENST00000392723	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000392723	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000361398	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000361398	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000271715	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000271715	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000368863	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000368863	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000409503	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000409503	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000531094	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000531094	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000540984	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000540984	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000491586	ENST00000473144		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
5CDS-intron	ENST00000491586	ENST00000343410		TCGA	RV	SKCM	TCGA-GN-A26A-06A	POGZ	chr1	151381170	-	HHIPL2	chr1	222712116	-
In-frame	ENST00000321521	ENST00000420436		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000321521	ENST00000334029		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000321521	ENST00000357068		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000358359	ENST00000420436		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000358359	ENST00000334029		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000358359	ENST00000357068		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
3UTR-3CDS	ENST00000513500	ENST00000420436		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
3UTR-3CDS	ENST00000513500	ENST00000334029		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
3UTR-3CDS	ENST00000513500	ENST00000357068		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000414217	ENST00000420436		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000414217	ENST00000334029		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
In-frame	ENST00000414217	ENST00000357068		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	PPIP5K2	chr5	102509676	+	PRODH	chr22	18907311	-
intron-3CDS	ENST00000413953	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-intron	ENST00000413953	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
5UTR-3CDS	ENST00000347140	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
5UTR-intron	ENST00000347140	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-3CDS	ENST00000358907	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-intron	ENST00000358907	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
5UTR-3CDS	ENST00000402412	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
5UTR-intron	ENST00000402412	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-3CDS	ENST00000441731	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-intron	ENST00000441731	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-3CDS	ENST00000403821	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-intron	ENST00000403821	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-3CDS	ENST00000546843	ENST00000228705		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
intron-intron	ENST00000546843	ENST00000551214		TCGA	RV	SKCM	TCGA-GN-A26D-06A	R3HDM2	chr12	57789532	-	PPM1H	chr12	63131366	-
In-frame	ENST00000274542	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000274542	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000274542	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000274542	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000274542	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000274542	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000274542	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000274542	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000274542	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000274542	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000274542	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
Frame-shit	ENST00000519865	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
Frame-shit	ENST00000519865	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
Frame-shit	ENST00000519865	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
Frame-shit	ENST00000519865	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
Frame-shit	ENST00000519865	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
Frame-shit	ENST00000519865	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000519865	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000519865	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000519865	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000519865	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000519865	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000424310	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000424310	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000424310	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000424310	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000424310	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000424310	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000424310	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000424310	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000424310	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000424310	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000424310	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000521606	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000521606	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000521606	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000521606	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000521606	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000521606	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000521606	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000521606	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000521606	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000521606	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000521606	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000518802	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000518802	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000518802	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000518802	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000518802	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000518802	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000518802	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000518802	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000518802	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000518802	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000518802	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000520638	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000520638	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000520638	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000520638	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000520638	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
In-frame	ENST00000520638	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000520638	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000520638	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000520638	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000520638	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5CDS-intron	ENST00000520638	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000518284	ENST00000340635		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000518284	ENST00000360047		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000518284	ENST00000507116		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000518284	ENST00000502484		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000518284	ENST00000546160		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-3CDS	ENST00000518284	ENST00000502575		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-intron	ENST00000518284	ENST00000358923		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-intron	ENST00000518284	ENST00000503258		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-intron	ENST00000518284	ENST00000405755		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-intron	ENST00000518284	ENST00000317118		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
intron-intron	ENST00000518284	ENST00000503947		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	RNF145	chr5	158596687	-	PDE4D	chr5	58511794	-
5UTR-5UTR	ENST00000409598	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409598	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409598	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409598	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409598	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409598	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000409598	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000409598	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000424281	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000424281	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000424281	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000424281	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000424281	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000424281	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000424281	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000424281	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000304527	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000304527	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000304527	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000304527	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000304527	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000304527	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000304527	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000304527	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000455740	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000455740	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000455740	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000455740	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000455740	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000455740	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000455740	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000455740	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409252	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409252	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409252	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409252	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409252	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000409252	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000409252	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000409252	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000514152	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000514152	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000514152	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000514152	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000514152	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000514152	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000514152	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000514152	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-5UTR	ENST00000427414	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-5UTR	ENST00000427414	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-5UTR	ENST00000427414	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-5UTR	ENST00000427414	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-5UTR	ENST00000427414	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-5UTR	ENST00000427414	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-intron	ENST00000427414	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
intron-intron	ENST00000427414	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000604030	ENST00000513000		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000604030	ENST00000509777		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000604030	ENST00000262992		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000604030	ENST00000308502		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000604030	ENST00000508116		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-5UTR	ENST00000604030	ENST00000507861		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000604030	ENST00000506217		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
5UTR-intron	ENST00000604030	ENST00000508084		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	SH3D19	chr4	152147199	-	INPP4B	chr4	143352538	-
In-frame	ENST00000287652	ENST00000256458		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	TATDN2	chr3	10312699	+	IRAK2	chr3	10280432	+
In-frame	ENST00000448281	ENST00000256458		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	TATDN2	chr3	10312699	+	IRAK2	chr3	10280432	+
intron-3CDS	ENST00000496355	ENST00000256458		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	TATDN2	chr3	10312699	+	IRAK2	chr3	10280432	+
Frame-shit	ENST00000437508	ENST00000451320		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000437508	ENST00000429148		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000437508	ENST00000353617		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000437508	ENST00000405727		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000437508	ENST00000356064		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000437508	ENST00000511289		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
3UTR-3CDS	ENST00000494872	ENST00000451320		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000494872	ENST00000429148		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000494872	ENST00000353617		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000494872	ENST00000405727		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
3UTR-intron	ENST00000494872	ENST00000356064		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
3UTR-3UTR	ENST00000494872	ENST00000511289		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
Frame-shit	ENST00000338700	ENST00000451320		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000338700	ENST00000429148		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000338700	ENST00000353617		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000338700	ENST00000405727		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000338700	ENST00000356064		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-3UTR	ENST00000338700	ENST00000511289		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154191671	+	ARFIP1	chr4	153784758	+
5CDS-intron	ENST00000258796	ENST00000484427		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000258796	ENST00000371764		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000407643	ENST00000484427		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000407643	ENST00000371764		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000403167	ENST00000484427		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000403167	ENST00000371764		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
intron-intron	ENST00000477439	ENST00000484427		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
intron-intron	ENST00000477439	ENST00000371764		TCGA	RV	SKCM	TCGA-EE-A29C-06A	TTYH3	chr7	2704434	+	DDX27	chr20	47849303	+
In-frame	ENST00000526343	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
In-frame	ENST00000282441	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
In-frame	ENST00000537274	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
In-frame	ENST00000345877	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
In-frame	ENST00000531439	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
In-frame	ENST00000524575	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
intron-3CDS	ENST00000528834	ENST00000524717		TCGA	RV	SKCM	TCGA-EE-A17Z-06A	YAP1	chr11	102076805	+	MAML2	chr11	95826681	-
Frame-shit	ENST00000311417	ENST00000264731		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
Frame-shit	ENST00000311417	ENST00000382063		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
Frame-shit	ENST00000311417	ENST00000418709		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
Frame-shit	ENST00000311417	ENST00000320472		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
Frame-shit	ENST00000311417	ENST00000392460		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
Frame-shit	ENST00000311417	ENST00000440651		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000311417	ENST00000354600		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000311417	ENST00000437221		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000311417	ENST00000392463		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000311417	ENST00000392461		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000311417	ENST00000456148		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000311417	ENST00000449992		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
In-frame	ENST00000432729	ENST00000264731		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
In-frame	ENST00000432729	ENST00000382063		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
In-frame	ENST00000432729	ENST00000418709		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
In-frame	ENST00000432729	ENST00000320472		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
In-frame	ENST00000432729	ENST00000392460		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
In-frame	ENST00000432729	ENST00000440651		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000432729	ENST00000354600		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000432729	ENST00000437221		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000432729	ENST00000392463		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000432729	ENST00000392461		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000432729	ENST00000456148		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5CDS-intron	ENST00000432729	ENST00000449992		TCGA	RV	SKCM	TCGA-GF-A769-01A	ZMAT3	chr3	178785271	-	TP63	chr3	189455529	+
5UTR-3CDS	ENST00000599227	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000269829	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000594384	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
3UTR-3CDS	ENST00000596597	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000596825	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000333581	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
intron-3CDS	ENST00000599953	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000596652	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000600044	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000600220	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000596929	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
5UTR-3CDS	ENST00000595981	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
intron-3CDS	ENST00000415203	ENST00000263269		TCGA	RV	SKCM	TCGA-D3-A2JE-06A	ZNF544	chr19	58741828	+	GRIN2D	chr19	48907991	+
Frame-shit	ENST00000338432	ENST00000242576		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000338432	ENST00000336865		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377854	ENST00000242576		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377854	ENST00000336865		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377848	ENST00000242576		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377848	ENST00000336865		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000242576		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000336865		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000242576		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000336865		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000541908	ENST00000396037		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000541908	ENST00000539510		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000541908	ENST00000536558		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000541908	ENST00000404299		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000541908	ENST00000381424		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000398864	ENST00000396037		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000398864	ENST00000539510		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000398864	ENST00000536558		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000398864	ENST00000404299		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000398864	ENST00000381424		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000266508	ENST00000396037		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000266508	ENST00000539510		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000266508	ENST00000536558		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000266508	ENST00000404299		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000266508	ENST00000381424		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000360995	ENST00000396037		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
Frame-shit	ENST00000360995	ENST00000539510		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000360995	ENST00000536558		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000360995	ENST00000404299		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
5CDS-intron	ENST00000360995	ENST00000381424		TCGA	RV	SKCM	TCGA-ER-A193-06A	AEBP2	chr12	19653155	+	ST8SIA1	chr12	22354972	-
intron-5UTR	ENST00000298834	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000426438	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000314845	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
5UTR-5UTR	ENST00000533727	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
5UTR-5UTR	ENST00000534300	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000458649	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
5UTR-5UTR	ENST00000528950	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000529963	ENST00000326737		TCGA	RV	SKCM	TCGA-D3-A3MO-06A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
In-frame	ENST00000383777	ENST00000398022		TCGA	RV	SKCM	TCGA-FS-A1ZF-06A	ANKRD28	chr3	15836730	-	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000383777	ENST00000217315		TCGA	RV	SKCM	TCGA-FS-A1ZF-06A	ANKRD28	chr3	15836730	-	TM9SF4	chr20	30720816	+
In-frame	ENST00000399451	ENST00000398022		TCGA	RV	SKCM	TCGA-FS-A1ZF-06A	ANKRD28	chr3	15836730	-	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000399451	ENST00000217315		TCGA	RV	SKCM	TCGA-FS-A1ZF-06A	ANKRD28	chr3	15836730	-	TM9SF4	chr20	30720816	+
5UTR-3CDS	ENST00000497037	ENST00000398022		TCGA	RV	SKCM	TCGA-FS-A1ZF-06A	ANKRD28	chr3	15836730	-	TM9SF4	chr20	30720816	+
5UTR-5UTR	ENST00000497037	ENST00000217315		TCGA	RV	SKCM	TCGA-FS-A1ZF-06A	ANKRD28	chr3	15836730	-	TM9SF4	chr20	30720816	+
In-frame	ENST00000288602	ENST00000355413		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
In-frame	ENST00000288602	ENST00000473247		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
5CDS-3UTR	ENST00000288602	ENST00000495028		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
5CDS-3UTR	ENST00000288602	ENST00000535825		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
5CDS-3UTR	ENST00000288602	ENST00000492693		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
Frame-shit	ENST00000383710	ENST00000478136		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000383710	ENST00000496687		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
5CDS-3UTR	ENST00000383710	ENST00000491017		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000357948	ENST00000478136		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000357948	ENST00000496687		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
5CDS-3UTR	ENST00000357948	ENST00000491017		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000283269	ENST00000478136		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000283269	ENST00000496687		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
5CDS-3UTR	ENST00000283269	ENST00000491017		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
intron-3CDS	ENST00000490353	ENST00000478136		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
intron-3CDS	ENST00000490353	ENST00000496687		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
intron-3UTR	ENST00000490353	ENST00000491017		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000462768	ENST00000478136		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000462768	ENST00000496687		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
5CDS-3UTR	ENST00000462768	ENST00000491017		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	CADPS	chr3	62451042	-	FAM19A1	chr3	68466430	+
Frame-shit	ENST00000241052	ENST00000299413		TCGA	RV	SKCM	TCGA-W3-A828-06A	CAT	chr11	34482936	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000241052	ENST00000532066		TCGA	RV	SKCM	TCGA-W3-A828-06A	CAT	chr11	34482936	+	TRIM44	chr11	35827908	+
intron-3CDS	ENST00000534710	ENST00000299413		TCGA	RV	SKCM	TCGA-W3-A828-06A	CAT	chr11	34482936	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000534710	ENST00000532066		TCGA	RV	SKCM	TCGA-W3-A828-06A	CAT	chr11	34482936	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000328908	ENST00000429723		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000328908	ENST00000379715		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000328908	ENST00000507463		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000397588	ENST00000429723		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000397588	ENST00000379715		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000397588	ENST00000507463		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
intron-3CDS	ENST00000472453	ENST00000429723		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
intron-3CDS	ENST00000472453	ENST00000379715		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
intron-3CDS	ENST00000472453	ENST00000507463		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000449732	ENST00000429723		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000449732	ENST00000379715		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000449732	ENST00000507463		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000343762	ENST00000429723		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000343762	ENST00000379715		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
Frame-shit	ENST00000343762	ENST00000507463		TCGA	RV	SKCM	TCGA-EE-A3JI-06A	CDYL	chr6	4892613	+	EEF1E1	chr6	8097700	-
5CDS-5UTR	ENST00000368073	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368073	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368073	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000326837	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000326837	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000326837	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368074	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368074	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000368074	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000608310	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000608310	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000608310	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000556710	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000556710	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-5UTR	ENST00000556710	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000610139	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000610139	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000610139	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000475733	ENST00000368192		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000475733	ENST00000326786		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
intron-5UTR	ENST00000475733	ENST00000460850		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	DCAF8	chr1	160206925	-	ETV3	chr1	157106157	-
5CDS-3UTR	ENST00000352241	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000352241	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000352241	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000448226	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000448226	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000448226	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000472437	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000472437	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000472437	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000328528	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000328528	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000328528	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000314589	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000314589	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314589	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000394355	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000394355	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000394355	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000314557	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000314557	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000314557	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394351	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394351	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394351	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000531774	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000531774	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000531774	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394348	ENST00000318789		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000394348	ENST00000475937		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000493089		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000484350		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000318779		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000491238		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000498215		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000468577		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000394348	ENST00000472382		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	70017484	+	FOXP1	chr3	71007472	-
In-frame	ENST00000421797	ENST00000380050		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000421797	ENST00000265741		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000421797	ENST00000406263		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000421797	ENST00000436577		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000421797	ENST00000496279		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000429546	ENST00000380050		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000429546	ENST00000265741		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000429546	ENST00000406263		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000429546	ENST00000436577		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000429546	ENST00000496279		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000352689	ENST00000380050		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000352689	ENST00000265741		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
In-frame	ENST00000352689	ENST00000406263		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000352689	ENST00000436577		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
5CDS-intron	ENST00000352689	ENST00000496279		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
intron-3CDS	ENST00000498778	ENST00000380050		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
intron-3CDS	ENST00000498778	ENST00000265741		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
intron-3CDS	ENST00000498778	ENST00000406263		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
intron-intron	ENST00000498778	ENST00000436577		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
intron-intron	ENST00000498778	ENST00000496279		TCGA	RV	SKCM	TCGA-EE-A20I-06A	MKLN1	chr7	131082135	+	CDK14	chr7	90376996	+
Frame-shit	ENST00000356297	ENST00000307179		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
Frame-shit	ENST00000356297	ENST00000433963		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
Frame-shit	ENST00000356297	ENST00000396444		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
Frame-shit	ENST00000356297	ENST00000425032		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
5CDS-intron	ENST00000356297	ENST00000558892		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000307179		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000433963		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000396444		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-3CDS	ENST00000543296	ENST00000425032		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
intron-intron	ENST00000543296	ENST00000558892		TCGA	RV	SKCM	TCGA-ER-A19T-01A	PXDNL	chr8	52252184	-	USP8	chr15	50769473	+
5CDS-5UTR	ENST00000308488	ENST00000526713		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000308488	ENST00000344327		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000308488	ENST00000532133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000308488	ENST00000360497		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000308488	ENST00000348423		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000360355	ENST00000526713		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000360355	ENST00000344327		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000360355	ENST00000532133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000360355	ENST00000360497		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
5CDS-5UTR	ENST00000360355	ENST00000348423		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000480887	ENST00000526713		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000480887	ENST00000344327		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000480887	ENST00000532133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000480887	ENST00000360497		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000480887	ENST00000348423		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000530604	ENST00000526713		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000530604	ENST00000344327		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000530604	ENST00000532133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000530604	ENST00000360497		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
intron-5UTR	ENST00000530604	ENST00000348423		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RSF1	chr11	77475643	-	TRPC6	chr11	101375529	-
Frame-shit	ENST00000256190	ENST00000527185		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000256190	ENST00000528682		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000256190	ENST00000524871		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000256190	ENST00000418526		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
Frame-shit	ENST00000256190	ENST00000279463		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
5CDS-intron	ENST00000256190	ENST00000524560		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000527019	ENST00000527185		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000527019	ENST00000528682		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000527019	ENST00000524871		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000527019	ENST00000418526		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
intron-3CDS	ENST00000527019	ENST00000279463		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
intron-intron	ENST00000527019	ENST00000524560		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	SBF2	chr11	10215449	-	CNTN5	chr11	100061858	+
5CDS-intron	ENST00000287218	ENST00000537330		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000287218	ENST00000570891		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000287218	ENST00000306801		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000287218	ENST00000544334		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-3UTR	ENST00000287218	ENST00000575542		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000373391	ENST00000537330		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000373391	ENST00000570891		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000373391	ENST00000306801		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-intron	ENST00000373391	ENST00000544334		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
5CDS-3UTR	ENST00000373391	ENST00000575542		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
intron-intron	ENST00000463847	ENST00000537330		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
intron-intron	ENST00000463847	ENST00000570891		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
intron-intron	ENST00000463847	ENST00000306801		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
intron-intron	ENST00000463847	ENST00000544334		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
intron-3UTR	ENST00000463847	ENST00000575542		TCGA	RV	SKCM	TCGA-EE-A29L-06A	ZFAND3	chr6	37787792	+	RPTOR	chr17	78865520	+
In-frame	ENST00000286122	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000286122	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
In-frame	ENST00000355163	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000355163	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
In-frame	ENST00000479780	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000479780	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
In-frame	ENST00000393208	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000393208	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
In-frame	ENST00000355022	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000355022	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
In-frame	ENST00000538234	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000538234	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
In-frame	ENST00000393207	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5CDS-intron	ENST00000393207	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
intron-3CDS	ENST00000481948	ENST00000284262		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
intron-intron	ENST00000481948	ENST00000563609		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	BANP	chr16	88052273	+	JPH3	chr16	87677864	+
5UTR-3CDS	ENST00000415149	ENST00000344949		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000415149	ENST00000394144		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3UTR	ENST00000415149	ENST00000486274		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-intron	ENST00000415149	ENST00000475134		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000402543	ENST00000344949		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000402543	ENST00000394144		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3UTR	ENST00000402543	ENST00000486274		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-intron	ENST00000402543	ENST00000475134		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000325805	ENST00000344949		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000325805	ENST00000394144		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3UTR	ENST00000325805	ENST00000486274		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-intron	ENST00000325805	ENST00000475134		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000416476	ENST00000344949		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3CDS	ENST00000416476	ENST00000394144		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-3UTR	ENST00000416476	ENST00000486274		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
5UTR-intron	ENST00000416476	ENST00000475134		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3CDS	ENST00000406780	ENST00000344949		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3CDS	ENST00000406780	ENST00000394144		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3UTR	ENST00000406780	ENST00000486274		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-intron	ENST00000406780	ENST00000475134		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3CDS	ENST00000473542	ENST00000344949		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3CDS	ENST00000473542	ENST00000394144		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3UTR	ENST00000473542	ENST00000486274		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-intron	ENST00000473542	ENST00000475134		TCGA	RV	SKCM	TCGA-EE-A20I-06A	BBX	chr3	107245245	+	TBC1D23	chr3	100002451	+
intron-3CDS	ENST00000417172	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000417172	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000361388	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000361388	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000422748	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000422748	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000361675	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000361675	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000361901	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000361901	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
Frame-shit	ENST00000393118	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
5CDS-3UTR	ENST00000393118	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
Frame-shit	ENST00000495522	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
5CDS-3UTR	ENST00000495522	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
Frame-shit	ENST00000424922	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
5CDS-3UTR	ENST00000424922	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000543443	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000543443	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000466704	ENST00000359579		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000466704	ENST00000475559		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	CALD1	chr7	134576424	+	AKR1B10	chr7	134215395	+
In-frame	ENST00000367064	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367064	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367064	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000367064	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367063	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367063	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367063	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000367063	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000391921	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000391921	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000391921	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000391921	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-3CDS	ENST00000367067	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-3CDS	ENST00000367067	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-3CDS	ENST00000367067	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-intron	ENST00000367067	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000314754	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000314754	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000314754	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000314754	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000391920	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000391920	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000391920	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000391920	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367062	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367062	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367062	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000367062	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367065	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367065	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
In-frame	ENST00000367065	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
5CDS-intron	ENST00000367065	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-3CDS	ENST00000465534	ENST00000536534		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-3CDS	ENST00000465534	ENST00000427495		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-3CDS	ENST00000465534	ENST00000442594		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
3UTR-intron	ENST00000465534	ENST00000474177		TCGA	RV	SKCM	TCGA-ER-A19T-01A	CD55	chr1	207512762	+	PLD5	chr1	242383417	-
intron-3CDS	ENST00000339788	ENST00000196371		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000339788	ENST00000509987		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000339788	ENST00000512084		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000339788	ENST00000510634		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000339788	ENST00000513081		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-3CDS	ENST00000320816	ENST00000196371		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000320816	ENST00000509987		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000320816	ENST00000512084		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000320816	ENST00000510634		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000320816	ENST00000513081		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-3CDS	ENST00000545653	ENST00000196371		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000545653	ENST00000509987		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000545653	ENST00000512084		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000545653	ENST00000510634		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000545653	ENST00000513081		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-3CDS	ENST00000509337	ENST00000196371		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000509337	ENST00000509987		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000509337	ENST00000512084		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000509337	ENST00000510634		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000509337	ENST00000513081		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-3CDS	ENST00000512525	ENST00000196371		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000512525	ENST00000509987		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000512525	ENST00000512084		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000512525	ENST00000510634		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
intron-intron	ENST00000512525	ENST00000513081		TCGA	RV	SKCM	TCGA-EE-A184-06A	DAB2	chr5	39462180	-	OXCT1	chr5	41853656	-
Frame-shit	ENST00000296550	ENST00000367463		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000296550	ENST00000466695		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
Frame-shit	ENST00000506325	ENST00000367463		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000506325	ENST00000466695		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
Frame-shit	ENST00000302176	ENST00000367463		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
5CDS-3UTR	ENST00000302176	ENST00000466695		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
intron-3CDS	ENST00000507694	ENST00000367463		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
intron-3UTR	ENST00000507694	ENST00000466695		TCGA	RV	SKCM	TCGA-ER-A19H-06A	DCLK2	chr4	151000600	+	UST	chr6	149394969	+
In-frame	ENST00000381441	ENST00000441222		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000381441	ENST00000451218		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000381441	ENST00000508499		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
5CDS-intron	ENST00000381441	ENST00000504078		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000334635	ENST00000441222		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000334635	ENST00000451218		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000334635	ENST00000508499		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
5CDS-intron	ENST00000334635	ENST00000504078		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
intron-3CDS	ENST00000513800	ENST00000441222		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
intron-3CDS	ENST00000513800	ENST00000451218		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
intron-3CDS	ENST00000513800	ENST00000508499		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
intron-intron	ENST00000513800	ENST00000504078		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000381437	ENST00000441222		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000381437	ENST00000451218		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000381437	ENST00000508499		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
5CDS-intron	ENST00000381437	ENST00000504078		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000451288	ENST00000441222		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000451288	ENST00000451218		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
In-frame	ENST00000451288	ENST00000508499		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
5CDS-intron	ENST00000451288	ENST00000504078		TCGA	RV	SKCM	TCGA-ER-A19B-06A	DCUN1D4	chr4	52752804	+	USP46	chr4	53476783	-
5CDS-5UTR	ENST00000306749	ENST00000260702		TCGA	RV	SKCM	TCGA-ER-A19H-06A	FASN	chr17	80040199	-	LOXL4	chr10	100022808	-
5UTR-5UTR	ENST00000579758	ENST00000260702		TCGA	RV	SKCM	TCGA-ER-A19H-06A	FASN	chr17	80040199	-	LOXL4	chr10	100022808	-
intron-5UTR	ENST00000310441	ENST00000320912		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
intron-5UTR	ENST00000310441	ENST00000507420		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
intron-5UTR	ENST00000310441	ENST00000382581		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
5CDS-5UTR	ENST00000369984	ENST00000320912		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
5CDS-5UTR	ENST00000369984	ENST00000507420		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
5CDS-5UTR	ENST00000369984	ENST00000382581		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
5CDS-5UTR	ENST00000354233	ENST00000320912		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
5CDS-5UTR	ENST00000354233	ENST00000507420		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
5CDS-5UTR	ENST00000354233	ENST00000382581		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
intron-5UTR	ENST00000461098	ENST00000320912		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
intron-5UTR	ENST00000461098	ENST00000507420		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
intron-5UTR	ENST00000461098	ENST00000382581		TCGA	RV	SKCM	TCGA-EB-A431-01A	HCFC1	chrX	153213014	-	MRFAP1	chr4	6642418	+
In-frame	ENST00000376462	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
intron-3CDS	ENST00000481700	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000458595	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000376454	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000376452	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
intron-3CDS	ENST00000430453	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000307544	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000396446	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000396445	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000376451	ENST00000323327		TCGA	RV	SKCM	TCGA-EE-A20I-06A	KIAA1217	chr10	24822166	+	C10orf67	chr10	23611466	-
In-frame	ENST00000244137	ENST00000599564		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
In-frame	ENST00000244137	ENST00000317991		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000244137	ENST00000504615		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000244137	ENST00000411896		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000244137	ENST00000424536		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-3UTR	ENST00000244137	ENST00000598073		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000397032	ENST00000599564		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000397032	ENST00000317991		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000397032	ENST00000504615		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000397032	ENST00000411896		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000397032	ENST00000424536		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-3UTR	ENST00000397032	ENST00000598073		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
In-frame	ENST00000436370	ENST00000599564		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
In-frame	ENST00000436370	ENST00000317991		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000436370	ENST00000504615		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000436370	ENST00000411896		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-5UTR	ENST00000436370	ENST00000424536		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5CDS-3UTR	ENST00000436370	ENST00000598073		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000591968	ENST00000599564		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-3CDS	ENST00000591968	ENST00000317991		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000591968	ENST00000504615		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000591968	ENST00000411896		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-5UTR	ENST00000591968	ENST00000424536		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
intron-3UTR	ENST00000591968	ENST00000598073		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	PEPD	chr19	33953901	-	GRAMD1A	chr19	35500023	+
5UTR-5UTR	ENST00000262043	ENST00000366822		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PHF3	chr6	64346055	+	C6orf123	chr6	168191773	-
intron-5UTR	ENST00000509330	ENST00000366822		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PHF3	chr6	64346055	+	C6orf123	chr6	168191773	-
intron-5UTR	ENST00000393387	ENST00000366822		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PHF3	chr6	64346055	+	C6orf123	chr6	168191773	-
intron-5UTR	ENST00000420043	ENST00000366822		TCGA	RV	SKCM	TCGA-EB-A82B-01A	PHF3	chr6	64346055	+	C6orf123	chr6	168191773	-
In-frame	ENST00000448150	ENST00000367350		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	RASAL2	chr1	178252826	+	KIF14	chr1	200544819	-
In-frame	ENST00000367649	ENST00000367350		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	RASAL2	chr1	178252826	+	KIF14	chr1	200544819	-
3UTR-3CDS	ENST00000465723	ENST00000367350		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	RASAL2	chr1	178252826	+	KIF14	chr1	200544819	-
intron-3CDS	ENST00000462775	ENST00000367350		TCGA	RV	SKCM	TCGA-BF-AAP4-01A	RASAL2	chr1	178252826	+	KIF14	chr1	200544819	-
5UTR-3CDS	ENST00000320892	ENST00000233146		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
5UTR-3CDS	ENST00000320892	ENST00000543555		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
5UTR-3CDS	ENST00000320892	ENST00000406134		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
5UTR-intron	ENST00000320892	ENST00000461394		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
3UTR-3CDS	ENST00000467276	ENST00000233146		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
3UTR-3CDS	ENST00000467276	ENST00000543555		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
3UTR-3CDS	ENST00000467276	ENST00000406134		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
3UTR-intron	ENST00000467276	ENST00000461394		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	RNF144A	chr2	7081278	+	MSH2	chr2	47635540	+
In-frame	ENST00000262435	ENST00000403766		TCGA	RV	SKCM	TCGA-EE-A29L-06A	SMURF2	chr17	62579579	-	UBAC2	chr13	99966351	+
In-frame	ENST00000262435	ENST00000376440		TCGA	RV	SKCM	TCGA-EE-A29L-06A	SMURF2	chr17	62579579	-	UBAC2	chr13	99966351	+
5CDS-3UTR	ENST00000262435	ENST00000460562		TCGA	RV	SKCM	TCGA-EE-A29L-06A	SMURF2	chr17	62579579	-	UBAC2	chr13	99966351	+
intron-3CDS	ENST00000578200	ENST00000403766		TCGA	RV	SKCM	TCGA-EE-A29L-06A	SMURF2	chr17	62579579	-	UBAC2	chr13	99966351	+
intron-3CDS	ENST00000578200	ENST00000376440		TCGA	RV	SKCM	TCGA-EE-A29L-06A	SMURF2	chr17	62579579	-	UBAC2	chr13	99966351	+
intron-3UTR	ENST00000578200	ENST00000460562		TCGA	RV	SKCM	TCGA-EE-A29L-06A	SMURF2	chr17	62579579	-	UBAC2	chr13	99966351	+
5UTR-5UTR	ENST00000327492	ENST00000417669		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
5UTR-intron	ENST00000327492	ENST00000414469		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
5UTR-intron	ENST00000327492	ENST00000439548		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
5UTR-5UTR	ENST00000327492	ENST00000443721		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
5UTR-intron	ENST00000327492	ENST00000465861		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
5UTR-5UTR	ENST00000327492	ENST00000542779		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
5UTR-5UTR	ENST00000327492	ENST00000538182		TCGA	RV	SKCM	TCGA-EB-A5KH-06A	TOB2	chr22	41842383	-	MPPED1	chr22	43820914	+
Frame-shit	ENST00000284273	ENST00000527524		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	UBASH3B	chr11	122526918	+	GRIK4	chr11	120823564	+
Frame-shit	ENST00000284273	ENST00000438375		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	UBASH3B	chr11	122526918	+	GRIK4	chr11	120823564	+
5CDS-intron	ENST00000284273	ENST00000527130		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	UBASH3B	chr11	122526918	+	GRIK4	chr11	120823564	+
3UTR-3CDS	ENST00000525711	ENST00000527524		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	UBASH3B	chr11	122526918	+	GRIK4	chr11	120823564	+
3UTR-3CDS	ENST00000525711	ENST00000438375		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	UBASH3B	chr11	122526918	+	GRIK4	chr11	120823564	+
3UTR-intron	ENST00000525711	ENST00000527130		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	UBASH3B	chr11	122526918	+	GRIK4	chr11	120823564	+
5CDS-5UTR	ENST00000475243	ENST00000396418		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
5CDS-intron	ENST00000475243	ENST00000352966		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
5CDS-intron	ENST00000475243	ENST00000518467		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
5CDS-5UTR	ENST00000395802	ENST00000396418		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
5CDS-intron	ENST00000395802	ENST00000352966		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
5CDS-intron	ENST00000395802	ENST00000518467		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
3UTR-5UTR	ENST00000265619	ENST00000396418		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
3UTR-intron	ENST00000265619	ENST00000352966		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
3UTR-intron	ENST00000265619	ENST00000518467		TCGA	RV	SKCM	TCGA-EE-A2MH-06A	VAPB	chr20	56964573	+	PKIA	chr8	79485046	+
Frame-shit	ENST00000369426	ENST00000370073		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000369426	ENST00000370071		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000369426	ENST00000370074		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000369426	ENST00000370070		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000369426	ENST00000370061		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000369426	ENST00000370072		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000369426	ENST00000542803		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000369426	ENST00000370068		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000369426	ENST00000370067		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000369426	ENST00000370065		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000369426	ENST00000370066		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
5CDS-intron	ENST00000369426	ENST00000477948		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000235521	ENST00000370073		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000235521	ENST00000370071		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000235521	ENST00000370074		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000235521	ENST00000370070		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000235521	ENST00000370061		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000235521	ENST00000370072		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000235521	ENST00000542803		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000235521	ENST00000370068		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000235521	ENST00000370067		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000235521	ENST00000370065		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000235521	ENST00000370066		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
5CDS-intron	ENST00000235521	ENST00000477948		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000537870	ENST00000370073		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000537870	ENST00000370071		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000537870	ENST00000370074		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000537870	ENST00000370070		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000537870	ENST00000370061		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000537870	ENST00000370072		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000537870	ENST00000542803		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000537870	ENST00000370068		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
Frame-shit	ENST00000537870	ENST00000370067		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000537870	ENST00000370065		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000537870	ENST00000370066		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
5CDS-intron	ENST00000537870	ENST00000477948		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370073		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370071		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370074		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370070		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370061		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370072		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000542803		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370068		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370067		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370065		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-3CDS	ENST00000497761	ENST00000370066		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
intron-intron	ENST00000497761	ENST00000477948		TCGA	RV	SKCM	TCGA-D3-A5GS-06A	WARS2	chr1	119618973	-	NTNG1	chr1	108023233	+
In-frame	ENST00000373297	ENST00000541742		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
In-frame	ENST00000373297	ENST00000490107		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
In-frame	ENST00000373297	ENST00000388985		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000373297	ENST00000366517		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000373297	ENST00000403792		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
In-frame	ENST00000314607	ENST00000541742		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
In-frame	ENST00000314607	ENST00000490107		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
In-frame	ENST00000314607	ENST00000388985		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000314607	ENST00000366517		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000314607	ENST00000403792		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
3UTR-3CDS	ENST00000482131	ENST00000541742		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
3UTR-3CDS	ENST00000482131	ENST00000490107		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
3UTR-3CDS	ENST00000482131	ENST00000388985		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
3UTR-5UTR	ENST00000482131	ENST00000366517		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
3UTR-intron	ENST00000482131	ENST00000403792		TCGA	RV	SKCM	TCGA-DA-A1I7-06A	ZMYM4	chr1	35827390	+	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000541908	ENST00000342362		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000541908	ENST00000382002		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000231423		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000513753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000397391		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000348262		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000542609		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000310101		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000511486		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000541908	ENST00000509934		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000398864	ENST00000342362		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000398864	ENST00000382002		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000231423		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000513753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000397391		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000348262		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000542609		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000310101		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000511486		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000398864	ENST00000509934		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000266508	ENST00000342362		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000266508	ENST00000382002		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000231423		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000513753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000397391		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000348262		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000542609		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000310101		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000511486		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000266508	ENST00000509934		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000360995	ENST00000342362		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-5UTR	ENST00000360995	ENST00000382002		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000231423		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000513753		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000397391		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000348262		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000542609		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000310101		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000511486		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000360995	ENST00000509934		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	AEBP2	chr12	19646920	+	PRLR	chr5	35118224	-
5CDS-intron	ENST00000397410	ENST00000389282		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-5UTR	ENST00000397410	ENST00000599910		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-intron	ENST00000397410	ENST00000263381		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-5UTR	ENST00000397410	ENST00000599686		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-5UTR	ENST00000397410	ENST00000545156		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-intron	ENST00000595465	ENST00000389282		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-5UTR	ENST00000595465	ENST00000599910		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-intron	ENST00000595465	ENST00000263381		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-5UTR	ENST00000595465	ENST00000599686		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5CDS-5UTR	ENST00000595465	ENST00000545156		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
intron-intron	ENST00000595879	ENST00000389282		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
intron-5UTR	ENST00000595879	ENST00000599910		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
intron-intron	ENST00000595879	ENST00000263381		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
intron-5UTR	ENST00000595879	ENST00000599686		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
intron-5UTR	ENST00000595879	ENST00000545156		TCGA	RV	SKCM	TCGA-EE-A20B-06A	AKAP8L	chr19	15521331	-	WIZ	chr19	15541993	-
5UTR-3CDS	ENST00000368891	ENST00000398250		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5UTR-3CDS	ENST00000368891	ENST00000439221		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5UTR-intron	ENST00000368891	ENST00000398248		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5UTR-intron	ENST00000368891	ENST00000541332		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5UTR-intron	ENST00000368891	ENST00000369073		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5UTR-intron	ENST00000368891	ENST00000496437		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
Frame-shit	ENST00000481909	ENST00000398250		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
Frame-shit	ENST00000481909	ENST00000439221		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000481909	ENST00000398248		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000481909	ENST00000541332		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000481909	ENST00000369073		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000481909	ENST00000496437		TCGA	RV	SKCM	TCGA-EB-A4P0-01A	C10orf88	chr10	124708165	-	PPAPDC1A	chr10	122334643	+
5CDS-intron	ENST00000295688	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000295688	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000295688	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000368259	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000368259	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000368259	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000368261	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000368261	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000368261	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000472765	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000472765	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000472765	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000368256	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000368256	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
intron-intron	ENST00000368256	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A29G-06A	CCT3	chr1	156278760	-	FAR1	chr11	13744912	+
5UTR-3CDS	ENST00000264010	ENST00000417689		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	CTCF	chr16	67605167	+	CES2	chr16	66971940	+
5UTR-3CDS	ENST00000264010	ENST00000317091		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	CTCF	chr16	67605167	+	CES2	chr16	66971940	+
5UTR-3CDS	ENST00000401394	ENST00000417689		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	CTCF	chr16	67605167	+	CES2	chr16	66971940	+
5UTR-3CDS	ENST00000401394	ENST00000317091		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	CTCF	chr16	67605167	+	CES2	chr16	66971940	+
In-frame	ENST00000360909	ENST00000267103		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000360909	ENST00000548632		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000360909	ENST00000549488		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
In-frame	ENST00000351081	ENST00000267103		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000351081	ENST00000548632		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000351081	ENST00000549488		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
In-frame	ENST00000395125	ENST00000267103		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000395125	ENST00000548632		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
5CDS-intron	ENST00000395125	ENST00000549488		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
intron-3CDS	ENST00000556135	ENST00000267103		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
intron-intron	ENST00000556135	ENST00000548632		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
intron-intron	ENST00000556135	ENST00000549488		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
intron-3CDS	ENST00000553966	ENST00000267103		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
intron-intron	ENST00000553966	ENST00000548632		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
intron-intron	ENST00000553966	ENST00000549488		TCGA	RV	SKCM	TCGA-EE-A2A6-06A	DAAM1	chr14	59798638	+	C12orf10	chr12	53699692	+
Frame-shit	ENST00000360909	ENST00000332981		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000360909	ENST00000555082		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000360909	ENST00000556245		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000351081	ENST00000332981		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000351081	ENST00000555082		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000351081	ENST00000556245		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000395125	ENST00000332981		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000395125	ENST00000555082		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000395125	ENST00000556245		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000556135	ENST00000332981		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
Frame-shit	ENST00000556135	ENST00000555082		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000556135	ENST00000556245		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000553966	ENST00000332981		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000553966	ENST00000555082		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
intron-intron	ENST00000553966	ENST00000556245		TCGA	RV	SKCM	TCGA-D3-A8GM-06A	DAAM1	chr14	59758024	+	PRKCH	chr14	61995793	+
5CDS-5UTR	ENST00000230895	ENST00000382496		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	DAP	chr5	10748287	-	SEMA5A	chr5	9380135	-
5CDS-5UTR	ENST00000432074	ENST00000382496		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	DAP	chr5	10748287	-	SEMA5A	chr5	9380135	-
5UTR-5UTR	ENST00000510546	ENST00000382496		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	DAP	chr5	10748287	-	SEMA5A	chr5	9380135	-
5CDS-5UTR	ENST00000341845	ENST00000491545		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000341845	ENST00000435456		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000341845	ENST00000402844		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000341845	ENST00000544408		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000341845	ENST00000542412		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000430046	ENST00000491545		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000430046	ENST00000435456		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000430046	ENST00000402844		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000430046	ENST00000544408		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000430046	ENST00000542412		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000512348	ENST00000491545		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000512348	ENST00000435456		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000512348	ENST00000402844		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000512348	ENST00000544408		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000512348	ENST00000542412		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000287761	ENST00000491545		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000287761	ENST00000435456		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000287761	ENST00000402844		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000287761	ENST00000544408		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000287761	ENST00000542412		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	FCHO2	chr5	72251956	+	SLC25A17	chr22	41175129	-
In-frame	ENST00000366847	ENST00000412704		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000366847	ENST00000376887		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000366847	ENST00000536256		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000366847	ENST00000431522		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
5CDS-3UTR	ENST00000366847	ENST00000538287		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
5CDS-intron	ENST00000366847	ENST00000474158		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000349556	ENST00000412704		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000349556	ENST00000376887		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000349556	ENST00000536256		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
In-frame	ENST00000349556	ENST00000431522		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
5CDS-3UTR	ENST00000349556	ENST00000538287		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
5CDS-intron	ENST00000349556	ENST00000474158		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
3UTR-3CDS	ENST00000476078	ENST00000412704		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
3UTR-3CDS	ENST00000476078	ENST00000376887		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
3UTR-3CDS	ENST00000476078	ENST00000536256		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
3UTR-3CDS	ENST00000476078	ENST00000431522		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
3UTR-3UTR	ENST00000476078	ENST00000538287		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
3UTR-intron	ENST00000476078	ENST00000474158		TCGA	RV	SKCM	TCGA-EB-A431-01A	FGFR1OP	chr6	167417299	+	ABCC4	chr13	95847191	-
5CDS-intron	ENST00000395388	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000395388	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000374982	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000374982	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000383127	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000383127	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000459705	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000459705	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000434866	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000434866	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000416883	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000416883	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000481943	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000481943	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000411505	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000411505	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000414698	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000414698	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000546379	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000546379	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000493431	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000493431	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000418111	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000418111	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000383259	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000383259	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000551750	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000551750	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000461633	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000461633	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000383258	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000383258	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000442960	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000442960	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000549531	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000549531	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000482781	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000482781	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000415767	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000415767	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000411524	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000411524	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000553193	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000553193	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000498597	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000498597	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000427753	ENST00000322349		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-intron	ENST00000427753	ENST00000547833		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	HLA-DRA	chr6	32412823	+	EEA1	chr12	93229203	-
intron-5UTR	ENST00000396352	ENST00000514342		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-5UTR	ENST00000396352	ENST00000505697		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000511363		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000503750		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000281631		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000514067		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000505554		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000513738		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000396352	ENST00000503665		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-5UTR	ENST00000317201	ENST00000514342		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-5UTR	ENST00000317201	ENST00000505697		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000511363		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000503750		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000281631		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000514067		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000505554		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000513738		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-intron	ENST00000317201	ENST00000503665		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-5UTR	ENST00000521401	ENST00000514342		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-5UTR	ENST00000521401	ENST00000505697		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000511363		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000503750		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000281631		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000514067		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000505554		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000513738		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
5UTR-intron	ENST00000521401	ENST00000503665		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	HOXA3	chr7	27179702	-	PARP8	chr5	50055477	+
intron-3CDS	ENST00000402574	ENST00000366691		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
intron-intron	ENST00000402574	ENST00000493528		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
intron-3CDS	ENST00000366918	ENST00000366691		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
intron-intron	ENST00000366918	ENST00000493528		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
Frame-shit	ENST00000366917	ENST00000366691		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
5CDS-intron	ENST00000366917	ENST00000493528		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
intron-3CDS	ENST00000485104	ENST00000366691		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
intron-intron	ENST00000485104	ENST00000493528		TCGA	RV	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220831176	+	RHOU	chr1	228873420	+
Frame-shit	ENST00000403222	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000403222	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000403222	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000403222	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000403222	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000403222	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000403222	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000403222	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000403222	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000403222	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000407373	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000407373	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000407373	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000407373	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000407373	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000407373	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000407373	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000407373	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000407373	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000407373	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000332585	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000332585	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000332585	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000332585	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000332585	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000332585	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000332585	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000332585	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000332585	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000332585	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000382310	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000382310	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000382310	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000382310	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000382310	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000382310	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000382310	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000382310	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000382310	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000382310	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000446658	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000446658	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000446658	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
Frame-shit	ENST00000446658	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
In-frame	ENST00000446658	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000446658	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000446658	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000446658	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000446658	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000446658	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000401475	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000401475	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000401475	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000401475	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000401475	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000401475	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000401475	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000401475	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000401475	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000401475	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000437268	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000437268	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000437268	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000437268	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000437268	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000437268	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000437268	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000437268	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000437268	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000437268	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000535268	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000535268	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000535268	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000535268	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000535268	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000535268	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000535268	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000535268	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000535268	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000535268	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000496575	ENST00000318325		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000496575	ENST00000370241		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000496575	ENST00000370242		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000496575	ENST00000299179		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-3CDS	ENST00000496575	ENST00000342071		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000496575	ENST00000370236		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000496575	ENST00000493646		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000496575	ENST00000477279		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000496575	ENST00000318364		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
intron-intron	ENST00000496575	ENST00000370234		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	OSBP2	chr22	31137356	+	MRPL43	chr10	102743574	-
5CDS-intron	ENST00000394936	ENST00000371917		TCGA	RV	SKCM	TCGA-EB-A5VU-01A	PSAP	chr10	73576056	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000394936	ENST00000493140		TCGA	RV	SKCM	TCGA-EB-A5VU-01A	PSAP	chr10	73576056	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000394934	ENST00000371917		TCGA	RV	SKCM	TCGA-EB-A5VU-01A	PSAP	chr10	73576056	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000394934	ENST00000493140		TCGA	RV	SKCM	TCGA-EB-A5VU-01A	PSAP	chr10	73576056	-	ARFGEF2	chr20	47615777	+
In-frame	ENST00000394936	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394936	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394936	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394936	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000394936	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394934	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394934	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394934	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
In-frame	ENST00000394934	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000394934	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	PSAP	chr10	73576056	-	IQCE	chr7	2641075	+
5CDS-5UTR	ENST00000535829	ENST00000521015		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000535829	ENST00000256398		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000535829	ENST00000542181		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-3UTR	ENST00000535829	ENST00000523760		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-intron	ENST00000535829	ENST00000524103		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-intron	ENST00000535829	ENST00000537665		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000535829	ENST00000380353		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000357529	ENST00000521015		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000357529	ENST00000256398		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000357529	ENST00000542181		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-3UTR	ENST00000357529	ENST00000523760		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-intron	ENST00000357529	ENST00000524103		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-intron	ENST00000357529	ENST00000537665		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000357529	ENST00000380353		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-5UTR	ENST00000299673	ENST00000521015		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-5UTR	ENST00000299673	ENST00000256398		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-5UTR	ENST00000299673	ENST00000542181		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-3UTR	ENST00000299673	ENST00000523760		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-intron	ENST00000299673	ENST00000524103		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-intron	ENST00000299673	ENST00000537665		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
3UTR-5UTR	ENST00000299673	ENST00000380353		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000538135	ENST00000521015		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000538135	ENST00000256398		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000538135	ENST00000542181		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-3UTR	ENST00000538135	ENST00000523760		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-intron	ENST00000538135	ENST00000524103		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-intron	ENST00000538135	ENST00000537665		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
5CDS-5UTR	ENST00000538135	ENST00000380353		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	RIMKLB	chr12	8866637	+	ELP3	chr8	27954736	+
In-frame	ENST00000334955	ENST00000222390		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
In-frame	ENST00000334955	ENST00000457544		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
In-frame	ENST00000334955	ENST00000444829		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
In-frame	ENST00000334955	ENST00000453411		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
5CDS-intron	ENST00000334955	ENST00000423064		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
5CDS-intron	ENST00000334955	ENST00000354224		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
5CDS-intron	ENST00000334955	ENST00000453018		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-3CDS	ENST00000445288	ENST00000222390		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-3CDS	ENST00000445288	ENST00000457544		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-3CDS	ENST00000445288	ENST00000444829		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-3CDS	ENST00000445288	ENST00000453411		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-intron	ENST00000445288	ENST00000423064		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-intron	ENST00000445288	ENST00000354224		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
intron-intron	ENST00000445288	ENST00000453018		TCGA	RV	SKCM	TCGA-EB-A5SE-01A	RSBN1L	chr7	77326372	+	HGF	chr7	81374436	-
5CDS-intron	ENST00000261716	ENST00000355035		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-intron	ENST00000261716	ENST00000380952		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-5UTR	ENST00000261716	ENST00000254850		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-intron	ENST00000261716	ENST00000446679		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-intron	ENST00000536202	ENST00000355035		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-intron	ENST00000536202	ENST00000380952		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-5UTR	ENST00000536202	ENST00000254850		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
5CDS-intron	ENST00000536202	ENST00000446679		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	TAOK1	chr17	27835150	+	ASGR2	chr17	7018130	-
intron-3UTR	ENST00000537971	ENST00000538029		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000537971	ENST00000356986		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000537971	ENST00000266551		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
5UTR-3UTR	ENST00000011898	ENST00000538029		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
5UTR-3UTR	ENST00000011898	ENST00000356986		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
5UTR-3UTR	ENST00000011898	ENST00000266551		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000407263	ENST00000538029		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000407263	ENST00000356986		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000407263	ENST00000266551		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000492305	ENST00000538029		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000492305	ENST00000356986		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
intron-3UTR	ENST00000492305	ENST00000266551		TCGA	RV	SKCM	TCGA-EE-A29V-06A	TSPAN9	chr12	3192885	+	KLRG1	chr12	9161571	+
Frame-shit	ENST00000083182	ENST00000570565		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
Frame-shit	ENST00000083182	ENST00000442502		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
Frame-shit	ENST00000083182	ENST00000340813		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
Frame-shit	ENST00000083182	ENST00000451037		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
Frame-shit	ENST00000083182	ENST00000285273		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
5CDS-intron	ENST00000083182	ENST00000571918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000592995	ENST00000570565		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000592995	ENST00000442502		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000592995	ENST00000340813		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000592995	ENST00000451037		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000592995	ENST00000285273		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
intron-intron	ENST00000592995	ENST00000571918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	APPBP2	chr17	58577760	-	CA10	chr17	49711011	-
5UTR-3CDS	ENST00000261861	ENST00000436008		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5UTR-3CDS	ENST00000261861	ENST00000406686		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5UTR-5UTR	ENST00000261861	ENST00000380302		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5UTR-5UTR	ENST00000261861	ENST00000490273		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5UTR-5UTR	ENST00000261861	ENST00000380298		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5UTR-intron	ENST00000261861	ENST00000433689		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
In-frame	ENST00000566799	ENST00000436008		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
In-frame	ENST00000566799	ENST00000406686		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5CDS-5UTR	ENST00000566799	ENST00000380302		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5CDS-5UTR	ENST00000566799	ENST00000490273		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5CDS-5UTR	ENST00000566799	ENST00000380298		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5CDS-intron	ENST00000566799	ENST00000433689		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-3CDS	ENST00000540068	ENST00000436008		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-3CDS	ENST00000540068	ENST00000406686		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-5UTR	ENST00000540068	ENST00000380302		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-5UTR	ENST00000540068	ENST00000490273		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-5UTR	ENST00000540068	ENST00000380298		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-intron	ENST00000540068	ENST00000433689		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-3CDS	ENST00000543950	ENST00000436008		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-3CDS	ENST00000543950	ENST00000406686		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-5UTR	ENST00000543950	ENST00000380302		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-5UTR	ENST00000543950	ENST00000490273		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-5UTR	ENST00000543950	ENST00000380298		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
intron-intron	ENST00000543950	ENST00000433689		TCGA	RV	SKCM	TCGA-YD-A89C-06A	CORO2B	chr15	68871616	+	SLC22A23	chr6	3416089	-
5CDS-5UTR	ENST00000528416	ENST00000376511		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000528416	ENST00000484449		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000420949		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000549281		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000468706		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000449113		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000547333		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000475926		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000426299		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000551493		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000494003		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000383586		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000548899		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000478528		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000424446		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000552146		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000488513		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000429597		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000549865		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000482076		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000415073	ENST00000376511		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000415073	ENST00000484449		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000420949		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000549281		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000468706		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000449113		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000547333		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000475926		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000426299		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000551493		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000494003		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000383586		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000548899		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000478528		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000424446		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000552146		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000488513		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000429597		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000549865		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000482076		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000252268	ENST00000376511		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000252268	ENST00000484449		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000420949		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000549281		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000468706		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000449113		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000547333		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000475926		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000426299		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000551493		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000494003		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000383586		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000548899		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000478528		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000424446		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000552146		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000488513		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000429597		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000549865		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000482076		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-5UTR	ENST00000532264	ENST00000376511		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-5UTR	ENST00000532264	ENST00000484449		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000420949		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000549281		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000468706		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000449113		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000547333		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000475926		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000426299		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000551493		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000494003		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000383586		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000548899		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000478528		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000424446		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000552146		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000488513		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000429597		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000549865		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000532264	ENST00000482076		TCGA	RV	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65108016	+	PPP1R10	chr6	30577732	-
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000317501		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000558306		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
5CDS-intron	ENST00000396373	ENST00000540489		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000317501		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000558306		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
intron-intron	ENST00000544715	ENST00000540489		TCGA	RV	SKCM	TCGA-EB-A51B-01A	ETV6	chr12	12022903	+	NTRK3	chr15	88483984	-
Frame-shit	ENST00000533608	ENST00000302708		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000533608	ENST00000378840		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000533608	ENST00000532410		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000358681	ENST00000302708		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000358681	ENST00000378840		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000358681	ENST00000532410		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000395673	ENST00000302708		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000395673	ENST00000378840		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000395673	ENST00000532410		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000343631	ENST00000302708		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-intron	ENST00000343631	ENST00000378840		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
5CDS-3UTR	ENST00000343631	ENST00000532410		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
3UTR-3CDS	ENST00000529186	ENST00000302708		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
3UTR-intron	ENST00000529186	ENST00000378840		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
3UTR-3UTR	ENST00000529186	ENST00000532410		TCGA	RV	SKCM	TCGA-ER-A194-01A	EXT2	chr11	44135851	+	ALKBH3	chr11	43940588	+
Frame-shit	ENST00000345617	ENST00000286063		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
Frame-shit	ENST00000345617	ENST00000358450		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
5CDS-intron	ENST00000345617	ENST00000450799		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000345617	ENST00000409504		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
5CDS-intron	ENST00000345617	ENST00000389683		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000345617	ENST00000449286		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
5CDS-5UTR	ENST00000345617	ENST00000497003		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000543185	ENST00000286063		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000543185	ENST00000358450		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-intron	ENST00000543185	ENST00000450799		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000543185	ENST00000409504		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-intron	ENST00000543185	ENST00000389683		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000543185	ENST00000449286		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000543185	ENST00000497003		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000541256	ENST00000286063		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000541256	ENST00000358450		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-intron	ENST00000541256	ENST00000450799		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000541256	ENST00000409504		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-intron	ENST00000541256	ENST00000389683		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000541256	ENST00000449286		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000541256	ENST00000497003		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000553145	ENST00000286063		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-3CDS	ENST00000553145	ENST00000358450		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-intron	ENST00000553145	ENST00000450799		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000553145	ENST00000409504		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-intron	ENST00000553145	ENST00000389683		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000553145	ENST00000449286		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
intron-5UTR	ENST00000553145	ENST00000497003		TCGA	RV	SKCM	TCGA-GN-A264-06A	HDAC4	chr2	240274373	-	PDE11A	chr2	178769914	-
In-frame	ENST00000524419	ENST00000426955		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
In-frame	ENST00000524419	ENST00000273794		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
In-frame	ENST00000528989	ENST00000426955		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
In-frame	ENST00000528989	ENST00000273794		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
In-frame	ENST00000315571	ENST00000426955		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
In-frame	ENST00000315571	ENST00000273794		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
intron-3CDS	ENST00000529759	ENST00000426955		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
intron-3CDS	ENST00000529759	ENST00000273794		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	LDLRAD3	chr11	36120011	+	VWA5B2	chr3	183952419	+
Frame-shit	ENST00000308482	ENST00000393547		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
Frame-shit	ENST00000308482	ENST00000398338		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
Frame-shit	ENST00000308482	ENST00000315005		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
5CDS-3UTR	ENST00000308482	ENST00000526915		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000468950	ENST00000393547		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000468950	ENST00000398338		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000468950	ENST00000315005		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3UTR	ENST00000468950	ENST00000526915		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000289175	ENST00000393547		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000289175	ENST00000398338		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000289175	ENST00000315005		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3UTR	ENST00000289175	ENST00000526915		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000244815	ENST00000393547		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000244815	ENST00000398338		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000244815	ENST00000315005		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3UTR	ENST00000244815	ENST00000526915		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000392000	ENST00000393547		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000392000	ENST00000398338		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3CDS	ENST00000392000	ENST00000315005		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
intron-3UTR	ENST00000392000	ENST00000526915		TCGA	RV	SKCM	TCGA-DA-A1IA-06A	LRRFIP1	chr2	238536383	+	DBF4B	chr17	42800248	+
In-frame	ENST00000508628	ENST00000355528		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000508628	ENST00000397466		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000508628	ENST00000539345		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
5CDS-intron	ENST00000508628	ENST00000576691		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000456466	ENST00000355528		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000456466	ENST00000397466		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000456466	ENST00000539345		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
5CDS-intron	ENST00000456466	ENST00000576691		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000582970	ENST00000355528		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000582970	ENST00000397466		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000582970	ENST00000539345		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
5CDS-intron	ENST00000582970	ENST00000576691		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000319921	ENST00000355528		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000319921	ENST00000397466		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
In-frame	ENST00000319921	ENST00000539345		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
5CDS-intron	ENST00000319921	ENST00000576691		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-3CDS	ENST00000336301	ENST00000355528		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-3CDS	ENST00000336301	ENST00000397466		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-3CDS	ENST00000336301	ENST00000539345		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-intron	ENST00000336301	ENST00000576691		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-3CDS	ENST00000427003	ENST00000355528		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-3CDS	ENST00000427003	ENST00000397466		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-3CDS	ENST00000427003	ENST00000539345		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
intron-intron	ENST00000427003	ENST00000576691		TCGA	RV	SKCM	TCGA-XV-AAZV-01A	RNF213	chr17	78237577	+	TBCD	chr17	80828100	+
5CDS-3UTR	ENST00000218340	ENST00000276055		TCGA	RV	SKCM	TCGA-EE-A2GL-06A	RP2	chrX	46696637	+	CHST7	chrX	46457195	+
5UTR-3CDS	ENST00000248929	ENST00000382398		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SGSM3	chr22	40766692	+	DEFB126	chr20	126056	+
5UTR-3UTR	ENST00000248929	ENST00000542572		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SGSM3	chr22	40766692	+	DEFB126	chr20	126056	+
5UTR-3CDS	ENST00000454798	ENST00000382398		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SGSM3	chr22	40766692	+	DEFB126	chr20	126056	+
5UTR-3UTR	ENST00000454798	ENST00000542572		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	SGSM3	chr22	40766692	+	DEFB126	chr20	126056	+
3UTR-3CDS	ENST00000526231	ENST00000528838		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
3UTR-3CDS	ENST00000526231	ENST00000400780		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
3UTR-3UTR	ENST00000526231	ENST00000528842		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
In-frame	ENST00000308860	ENST00000528838		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
In-frame	ENST00000308860	ENST00000400780		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
5CDS-3UTR	ENST00000308860	ENST00000528842		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
In-frame	ENST00000532190	ENST00000528838		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
In-frame	ENST00000532190	ENST00000400780		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
5CDS-3UTR	ENST00000532190	ENST00000528842		TCGA	RV	SKCM	TCGA-ER-A19W-06A	ADCK5	chr8	145608431	+	HSF1	chr8	145537197	+
5CDS-5UTR	ENST00000368194	ENST00000272203		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000368194	ENST00000414478		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000368194	ENST00000485632		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000487682	ENST00000272203		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000487682	ENST00000414478		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
intron-intron	ENST00000487682	ENST00000485632		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000361409	ENST00000272203		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000361409	ENST00000414478		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000361409	ENST00000485632		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000315174	ENST00000272203		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000315174	ENST00000414478		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
intron-intron	ENST00000315174	ENST00000485632		TCGA	RV	SKCM	TCGA-EE-A182-06A	ARHGEF11	chr1	157014091	-	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000367064	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367064	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367064	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000367064	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367063	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367063	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367063	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000367063	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000391921	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000391921	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000391921	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000391921	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-5UTR	ENST00000367067	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-5UTR	ENST00000367067	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-5UTR	ENST00000367067	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-intron	ENST00000367067	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000314754	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000314754	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000314754	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000314754	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000391920	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000391920	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000391920	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000391920	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367062	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367062	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367062	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000367062	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367065	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367065	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367065	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
5CDS-intron	ENST00000367065	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-5UTR	ENST00000465534	ENST00000356198		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-5UTR	ENST00000465534	ENST00000345664		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-5UTR	ENST00000465534	ENST00000367710		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
3UTR-intron	ENST00000465534	ENST00000495275		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CD55	chr1	207510163	+	CENPL	chr1	173780444	-
Frame-shit	ENST00000281928	ENST00000358154		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	MED13L	chr12	116675273	-	METTL9	chr16	21629186	+
Frame-shit	ENST00000281928	ENST00000396014		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	MED13L	chr12	116675273	-	METTL9	chr16	21629186	+
5CDS-intron	ENST00000281928	ENST00000563026		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	MED13L	chr12	116675273	-	METTL9	chr16	21629186	+
5UTR-3CDS	ENST00000551197	ENST00000358154		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	MED13L	chr12	116675273	-	METTL9	chr16	21629186	+
5UTR-3CDS	ENST00000551197	ENST00000396014		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	MED13L	chr12	116675273	-	METTL9	chr16	21629186	+
5UTR-intron	ENST00000551197	ENST00000563026		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	MED13L	chr12	116675273	-	METTL9	chr16	21629186	+
intron-intron	ENST00000453228	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
intron-5UTR	ENST00000453228	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
intron-5UTR	ENST00000453228	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
intron-5UTR	ENST00000453228	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-intron	ENST00000354410	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000354410	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000354410	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000354410	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
3UTR-intron	ENST00000558856	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
3UTR-5UTR	ENST00000558856	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
3UTR-5UTR	ENST00000558856	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
3UTR-5UTR	ENST00000558856	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-intron	ENST00000558812	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000558812	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000558812	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000558812	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-intron	ENST00000338042	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000338042	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000338042	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000338042	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-intron	ENST00000557785	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000557785	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000557785	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000557785	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-intron	ENST00000449277	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000449277	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000449277	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000449277	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-intron	ENST00000557942	ENST00000559332		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000557942	ENST00000558311		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000557942	ENST00000267973		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-5UTR	ENST00000557942	ENST00000558459		TCGA	RV	SKCM	TCGA-GN-A26A-06A	MEF2A	chr15	100106309	+	WDR61	chr15	78588067	-
5UTR-3CDS	ENST00000401950	ENST00000334018		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000401950	ENST00000404820		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000401950	ENST00000404755		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-intron	ENST00000401950	ENST00000484039		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000333027	ENST00000334018		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000333027	ENST00000404820		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000333027	ENST00000404755		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-intron	ENST00000333027	ENST00000484039		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000323630	ENST00000334018		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000323630	ENST00000404820		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000323630	ENST00000404755		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-intron	ENST00000323630	ENST00000484039		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000351488	ENST00000334018		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000351488	ENST00000404820		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-3CDS	ENST00000351488	ENST00000404755		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
5UTR-intron	ENST00000351488	ENST00000484039		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000406629	ENST00000334018		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000406629	ENST00000404820		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000406629	ENST00000404755		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
intron-intron	ENST00000406629	ENST00000484039		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
3UTR-3CDS	ENST00000415511	ENST00000334018		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
3UTR-3CDS	ENST00000415511	ENST00000404820		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
3UTR-3CDS	ENST00000415511	ENST00000404755		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
3UTR-intron	ENST00000415511	ENST00000484039		TCGA	RV	SKCM	TCGA-D3-A8GJ-06A	MTMR3	chr22	30279348	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000402802	ENST00000353809		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
Frame-shit	ENST00000402802	ENST00000354638		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
Frame-shit	ENST00000402802	ENST00000382996		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
Frame-shit	ENST00000354513	ENST00000353809		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
Frame-shit	ENST00000354513	ENST00000354638		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
Frame-shit	ENST00000354513	ENST00000382996		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
5UTR-3CDS	ENST00000426681	ENST00000353809		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
5UTR-3CDS	ENST00000426681	ENST00000354638		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
5UTR-3CDS	ENST00000426681	ENST00000382996		TCGA	RV	SKCM	TCGA-ER-A197-06A	PDGFA	chr7	557031	-	OCA2	chr15	28277309	-
Frame-shit	ENST00000413366	ENST00000580974		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000413366	ENST00000299954		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000413366	ENST00000335257		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000413366	ENST00000581322		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000583361	ENST00000580974		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000583361	ENST00000299954		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000583361	ENST00000335257		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
3UTR-3CDS	ENST00000583361	ENST00000581322		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	PRKCA	chr17	64302245	+	PITPNC1	chr17	65665624	+
Frame-shit	ENST00000304685	ENST00000271588		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000304685	ENST00000367492		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000304685	ENST00000485744		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
intron-3CDS	ENST00000536277	ENST00000271588		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
intron-3CDS	ENST00000536277	ENST00000367492		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
intron-intron	ENST00000536277	ENST00000485744		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000360851	ENST00000271588		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000360851	ENST00000367492		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000360851	ENST00000485744		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000539189	ENST00000271588		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
Frame-shit	ENST00000539189	ENST00000367492		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
5CDS-intron	ENST00000539189	ENST00000485744		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	RGL1	chr1	183775619	+	HMCN1	chr1	185815158	+
In-frame	ENST00000308488	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
In-frame	ENST00000308488	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
In-frame	ENST00000360355	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
In-frame	ENST00000360355	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000480887	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000480887	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
5UTR-3CDS	ENST00000530604	ENST00000281038		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
5UTR-3CDS	ENST00000530604	ENST00000528850		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	RSF1	chr11	77531574	-	NARS2	chr11	78154804	-
In-frame	ENST00000355875	ENST00000366514		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
5CDS-3UTR	ENST00000355875	ENST00000544618		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
In-frame	ENST00000366541	ENST00000366514		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
5CDS-3UTR	ENST00000366541	ENST00000544618		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
intron-3CDS	ENST00000343783	ENST00000366514		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
intron-3UTR	ENST00000343783	ENST00000544618		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
In-frame	ENST00000391846	ENST00000366514		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
5CDS-3UTR	ENST00000391846	ENST00000544618		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
intron-3CDS	ENST00000496361	ENST00000366514		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
intron-3UTR	ENST00000496361	ENST00000544618		TCGA	RV	SKCM	TCGA-ER-A197-06A	SDCCAG8	chr1	243437958	+	TFB2M	chr1	246714604	-
Frame-shit	ENST00000609923	ENST00000374139		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	SLC25A16	chr10	70248224	-	DRGX	chr10	50574426	-
In-frame	ENST00000609923	ENST00000434016		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	SLC25A16	chr10	70248224	-	DRGX	chr10	50574426	-
In-frame	ENST00000539557	ENST00000374139		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	SLC25A16	chr10	70248224	-	DRGX	chr10	50574426	-
Frame-shit	ENST00000539557	ENST00000434016		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	SLC25A16	chr10	70248224	-	DRGX	chr10	50574426	-
5UTR-3CDS	ENST00000265870	ENST00000374139		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	SLC25A16	chr10	70248224	-	DRGX	chr10	50574426	-
5UTR-3CDS	ENST00000265870	ENST00000434016		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	SLC25A16	chr10	70248224	-	DRGX	chr10	50574426	-
Frame-shit	ENST00000330884	ENST00000407690		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000330884	ENST00000407431		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000330884	ENST00000407148		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000330884	ENST00000405938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
5CDS-5UTR	ENST00000330884	ENST00000496523		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000540422	ENST00000407690		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000540422	ENST00000407431		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000540422	ENST00000407148		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000540422	ENST00000405938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
5CDS-5UTR	ENST00000540422	ENST00000496523		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000249130	ENST00000407690		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000249130	ENST00000407431		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000249130	ENST00000407148		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
Frame-shit	ENST00000249130	ENST00000405938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
5CDS-5UTR	ENST00000249130	ENST00000496523		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	SULT4A1	chr22	44258094	-	TFIP11	chr22	26899759	-
intron-3CDS	ENST00000530124	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	AHNAK	chr11	62283375	-	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000257247	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	AHNAK	chr11	62283375	-	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000525875	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	AHNAK	chr11	62283375	-	BIRC6	chr2	32820101	+
In-frame	ENST00000378024	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	AHNAK	chr11	62283375	-	BIRC6	chr2	32820101	+
intron-5UTR	ENST00000547409	ENST00000228515		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	C12orf44	chr12	52464267	+	CSRNP2	chr12	51470430	-
intron-5UTR	ENST00000547409	ENST00000550461		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	C12orf44	chr12	52464267	+	CSRNP2	chr12	51470430	-
5UTR-5UTR	ENST00000336854	ENST00000228515		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	C12orf44	chr12	52464267	+	CSRNP2	chr12	51470430	-
5UTR-5UTR	ENST00000336854	ENST00000550461		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	C12orf44	chr12	52464267	+	CSRNP2	chr12	51470430	-
5UTR-3CDS	ENST00000361654	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-3CDS	ENST00000361654	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-5UTR	ENST00000361654	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000545889	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000545889	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000545889	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000302528	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000302528	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000302528	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-3CDS	ENST00000358808	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-3CDS	ENST00000358808	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-5UTR	ENST00000358808	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-3CDS	ENST00000537178	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-3CDS	ENST00000537178	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5UTR-5UTR	ENST00000537178	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000540338	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000540338	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000540338	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000536634	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000536634	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000536634	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000540539	ENST00000331738		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-3CDS	ENST00000540539	ENST00000354654		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
intron-5UTR	ENST00000540539	ENST00000392442		TCGA	RV	SKCM	TCGA-D3-A51H-06A	CLIP1	chr12	122907068	-	RSRC2	chr12	122992994	-
5CDS-3UTR	ENST00000262424	ENST00000278937		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
5CDS-intron	ENST00000262424	ENST00000438295		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
5CDS-intron	ENST00000262424	ENST00000525647		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
5CDS-3UTR	ENST00000567845	ENST00000278937		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
5CDS-intron	ENST00000567845	ENST00000438295		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
5CDS-intron	ENST00000567845	ENST00000525647		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-3UTR	ENST00000566431	ENST00000278937		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-intron	ENST00000566431	ENST00000438295		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-intron	ENST00000566431	ENST00000525647		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-3UTR	ENST00000564567	ENST00000278937		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-intron	ENST00000564567	ENST00000438295		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-intron	ENST00000564567	ENST00000525647		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-3UTR	ENST00000569090	ENST00000278937		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-intron	ENST00000569090	ENST00000438295		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
intron-intron	ENST00000569090	ENST00000525647		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	CRISPLD2	chr16	84922969	+	MPZL2	chr11	118125948	-
In-frame	ENST00000403627	ENST00000352035		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000403627	ENST00000590151		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000403627	ENST00000353196		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000403627	ENST00000537919		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000403627	ENST00000393896		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5CDS-intron	ENST00000403627	ENST00000588779		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000405159	ENST00000352035		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000405159	ENST00000590151		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000405159	ENST00000353196		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000405159	ENST00000537919		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
In-frame	ENST00000405159	ENST00000393896		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5CDS-intron	ENST00000405159	ENST00000588779		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000583178	ENST00000352035		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000583178	ENST00000590151		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000583178	ENST00000353196		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000583178	ENST00000537919		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000583178	ENST00000393896		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-intron	ENST00000583178	ENST00000588779		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000580032	ENST00000352035		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000580032	ENST00000590151		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000580032	ENST00000353196		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000580032	ENST00000537919		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-3CDS	ENST00000580032	ENST00000393896		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5UTR-intron	ENST00000580032	ENST00000588779		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-3CDS	ENST00000581110	ENST00000352035		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-3CDS	ENST00000581110	ENST00000590151		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-3CDS	ENST00000581110	ENST00000353196		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-3CDS	ENST00000581110	ENST00000537919		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-3CDS	ENST00000581110	ENST00000393896		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-intron	ENST00000581110	ENST00000588779		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
Frame-shit	ENST00000583024	ENST00000352035		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
Frame-shit	ENST00000583024	ENST00000590151		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
Frame-shit	ENST00000583024	ENST00000353196		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
Frame-shit	ENST00000583024	ENST00000537919		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
Frame-shit	ENST00000583024	ENST00000393896		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
5CDS-intron	ENST00000583024	ENST00000588779		TCGA	RV	SKCM	TCGA-YG-AA3P-06A	FAM104A	chr17	71223304	-	ACLY	chr17	40058066	-
intron-intron	ENST00000514455	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000514455	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000514455	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000511566	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000511566	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000511566	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000376817	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000376817	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000376817	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000512805	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000512805	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000512805	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000504726	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-intron	ENST00000504726	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5CDS-5UTR	ENST00000504726	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000511900	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000511900	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000511900	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000456394	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000456394	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000456394	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000505461	ENST00000220764		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-intron	ENST00000505461	ENST00000519007		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
intron-5UTR	ENST00000505461	ENST00000522161		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	GNB2L1	chr5	180663934	-	DECR1	chr8	91017676	+
5UTR-3CDS	ENST00000338586	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000338586	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000338515	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000338515	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000367171	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000367171	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000367169	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000367169	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000539706	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000539706	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000339876	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000339876	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000367170	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000367170	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000360049	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000360049	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000367172	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000367172	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-3CDS	ENST00000403080	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
5UTR-5UTR	ENST00000403080	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-3CDS	ENST00000404076	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-5UTR	ENST00000404076	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-3CDS	ENST00000401399	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-5UTR	ENST00000401399	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-3CDS	ENST00000404907	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-5UTR	ENST00000404907	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-3CDS	ENST00000513543	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-5UTR	ENST00000513543	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-3CDS	ENST00000495396	ENST00000300213		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-5UTR	ENST00000495396	ENST00000356633		TCGA	RV	SKCM	TCGA-D3-A51E-06A	NFASC	chr1	204797910	+	CCNDBP1	chr15	43481397	+
intron-3CDS	ENST00000397472	ENST00000380490		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000397472	ENST00000479597		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
In-frame	ENST00000319863	ENST00000380490		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
5CDS-intron	ENST00000319863	ENST00000479597		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000526325	ENST00000380490		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000526325	ENST00000479597		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
In-frame	ENST00000442059	ENST00000380490		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
5CDS-intron	ENST00000442059	ENST00000479597		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
In-frame	ENST00000524550	ENST00000380490		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
5CDS-intron	ENST00000524550	ENST00000479597		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
5UTR-3CDS	ENST00000529966	ENST00000380490		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
5UTR-intron	ENST00000529966	ENST00000479597		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	770993	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000522243	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000422546	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
In-frame	ENST00000260130	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000447182	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000413219	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000424270	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000523483	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000520168	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000447267	ENST00000421745		TCGA	RV	SKCM	TCGA-EE-A29E-06A	SDCBP	chr8	59495417	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000308624	ENST00000302188		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	SNTG2	chr2	1320147	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000308624	ENST00000444339		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	SNTG2	chr2	1320147	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000407292	ENST00000302188		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	SNTG2	chr2	1320147	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000407292	ENST00000444339		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	SNTG2	chr2	1320147	+	RBKS	chr2	28055644	-
intron-3CDS	ENST00000467759	ENST00000302188		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	SNTG2	chr2	1320147	+	RBKS	chr2	28055644	-
intron-3CDS	ENST00000467759	ENST00000444339		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	SNTG2	chr2	1320147	+	RBKS	chr2	28055644	-
Frame-shit	ENST00000269033	ENST00000394957		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
5CDS-intron	ENST00000269033	ENST00000481568		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
Frame-shit	ENST00000540801	ENST00000394957		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
5CDS-intron	ENST00000540801	ENST00000481568		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
intron-3CDS	ENST00000324677	ENST00000394957		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
intron-intron	ENST00000324677	ENST00000481568		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
Frame-shit	ENST00000582084	ENST00000394957		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
5CDS-intron	ENST00000582084	ENST00000481568		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
Frame-shit	ENST00000590153	ENST00000394957		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
5CDS-intron	ENST00000590153	ENST00000481568		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
Frame-shit	ENST00000579954	ENST00000394957		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
5CDS-intron	ENST00000579954	ENST00000481568		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	SSH2	chr17	28256956	-	C10orf54	chr10	73521783	-
In-frame	ENST00000262144	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
In-frame	ENST00000262144	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
5CDS-intron	ENST00000262144	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000465878		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000379655		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000445690		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000421376		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000541240		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000540079		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000543930		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000562903		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-3CDS	ENST00000562331	ENST00000539578		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
intron-intron	ENST00000562331	ENST00000566975		TCGA	RV	SKCM	TCGA-EE-A2MN-06A	WDR59	chr16	75018862	-	KIFC3	chr16	57795083	-
5UTR-3CDS	ENST00000517970	ENST00000423620		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000517970	ENST00000433389		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000517970	ENST00000358397		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
5UTR-3CDS	ENST00000517970	ENST00000454170		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
5UTR-intron	ENST00000517970	ENST00000523347		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000349423	ENST00000423620		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000349423	ENST00000433389		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000349423	ENST00000358397		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000349423	ENST00000454170		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-intron	ENST00000349423	ENST00000523347		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000341922	ENST00000423620		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000341922	ENST00000433389		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000341922	ENST00000358397		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000341922	ENST00000454170		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-intron	ENST00000341922	ENST00000523347		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000265428	ENST00000423620		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000265428	ENST00000433389		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000265428	ENST00000358397		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-3CDS	ENST00000265428	ENST00000454170		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
intron-intron	ENST00000265428	ENST00000523347		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
3UTR-3CDS	ENST00000523863	ENST00000423620		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
3UTR-3CDS	ENST00000523863	ENST00000433389		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
3UTR-3CDS	ENST00000523863	ENST00000358397		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
3UTR-3CDS	ENST00000523863	ENST00000454170		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
3UTR-intron	ENST00000523863	ENST00000523347		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	WWP1	chr8	87355159	+	ESRP1	chr8	95674729	+
Frame-shit	ENST00000376170	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376170	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000359188	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000359188	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376142	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376142	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376139	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376139	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376160	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376160	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376166	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376166	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376138	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376138	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000355394	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000355394	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000490841	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000490841	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376137	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376137	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000346832	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000346832	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000536334	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000536334	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376134	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376134	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
Frame-shit	ENST00000376140	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
5CDS-intron	ENST00000376140	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
intron-3CDS	ENST00000473481	ENST00000377833		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
intron-intron	ENST00000473481	ENST00000377823		TCGA	RV	SKCM	TCGA-EB-A82C-01A	ABI1	chr10	27149676	-	CUBN	chr10	17032514	-
intron-3CDS	ENST00000366603	ENST00000295591		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
intron-3CDS	ENST00000366603	ENST00000335211		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
intron-intron	ENST00000366603	ENST00000451870		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
5UTR-3CDS	ENST00000264183	ENST00000295591		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
5UTR-3CDS	ENST00000264183	ENST00000335211		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
5UTR-intron	ENST00000264183	ENST00000451870		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
5UTR-3CDS	ENST00000349213	ENST00000295591		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
5UTR-3CDS	ENST00000349213	ENST00000335211		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
5UTR-intron	ENST00000349213	ENST00000451870		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
intron-3CDS	ENST00000494543	ENST00000295591		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
intron-3CDS	ENST00000494543	ENST00000335211		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
intron-intron	ENST00000494543	ENST00000451870		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ARID4B	chr1	235491084	-	IGFN1	chr1	201194952	+
In-frame	ENST00000066544	ENST00000288602		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CDC27	chr17	45206759	-	BRAF	chr7	140487384	-
In-frame	ENST00000531206	ENST00000288602		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CDC27	chr17	45206759	-	BRAF	chr7	140487384	-
Frame-shit	ENST00000446365	ENST00000288602		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CDC27	chr17	45206759	-	BRAF	chr7	140487384	-
In-frame	ENST00000527547	ENST00000288602		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CDC27	chr17	45206759	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000528748	ENST00000288602		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CDC27	chr17	45206759	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000523094	ENST00000377595		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
intron-intron	ENST00000523094	ENST00000606347		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
intron-3CDS	ENST00000530742	ENST00000377595		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
intron-intron	ENST00000530742	ENST00000606347		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
5UTR-3CDS	ENST00000296951	ENST00000377595		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
5UTR-intron	ENST00000296951	ENST00000606347		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
In-frame	ENST00000411809	ENST00000377595		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
5CDS-intron	ENST00000411809	ENST00000606347		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
In-frame	ENST00000523908	ENST00000377595		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
5CDS-intron	ENST00000523908	ENST00000606347		TCGA	RV	SKCM	TCGA-Z2-A8RT-06A	CLINT1	chr5	157285938	-	UCHL3	chr13	76134889	+
Frame-shit	ENST00000263253	ENST00000348697		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263253	ENST00000402984		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263253	ENST00000262722		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263253	ENST00000327858		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263253	ENST00000442170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263253	ENST00000340923		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263253	ENST00000476366		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	EP300	chr22	41551117	+	FBLN1	chr22	45996187	+
Frame-shit	ENST00000358621	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
5CDS-intron	ENST00000358621	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
5CDS-intron	ENST00000358621	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
Frame-shit	ENST00000357447	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
5CDS-intron	ENST00000357447	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
5CDS-intron	ENST00000357447	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
In-frame	ENST00000378503	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
5CDS-intron	ENST00000378503	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
5CDS-intron	ENST00000378503	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-3CDS	ENST00000342409	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000342409	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000342409	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-3CDS	ENST00000493380	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000493380	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000493380	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-3CDS	ENST00000475141	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000475141	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000475141	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-3CDS	ENST00000492155	ENST00000376236		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000492155	ENST00000356785		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
intron-intron	ENST00000492155	ENST00000493857		TCGA	RV	SKCM	TCGA-ER-A196-01A	FRMD4A	chr10	13716911	-	APBB1IP	chr10	26800676	+
In-frame	ENST00000163416	ENST00000216487		TCGA	RV	SKCM	TCGA-EB-A85J-01A	GOLGA5	chr14	93275864	+	RIN3	chr14	93022096	+
5CDS-intron	ENST00000163416	ENST00000418924		TCGA	RV	SKCM	TCGA-EB-A85J-01A	GOLGA5	chr14	93275864	+	RIN3	chr14	93022096	+
5CDS-intron	ENST00000163416	ENST00000557762		TCGA	RV	SKCM	TCGA-EB-A85J-01A	GOLGA5	chr14	93275864	+	RIN3	chr14	93022096	+
In-frame	ENST00000355976	ENST00000216487		TCGA	RV	SKCM	TCGA-EB-A85J-01A	GOLGA5	chr14	93275864	+	RIN3	chr14	93022096	+
5CDS-intron	ENST00000355976	ENST00000418924		TCGA	RV	SKCM	TCGA-EB-A85J-01A	GOLGA5	chr14	93275864	+	RIN3	chr14	93022096	+
5CDS-intron	ENST00000355976	ENST00000557762		TCGA	RV	SKCM	TCGA-EB-A85J-01A	GOLGA5	chr14	93275864	+	RIN3	chr14	93022096	+
3UTR-intron	ENST00000398606	ENST00000371917		TCGA	RV	SKCM	TCGA-EE-A2GM-06B	GSTP1	chr11	67354121	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000398606	ENST00000493140		TCGA	RV	SKCM	TCGA-EE-A2GM-06B	GSTP1	chr11	67354121	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000398603	ENST00000371917		TCGA	RV	SKCM	TCGA-EE-A2GM-06B	GSTP1	chr11	67354121	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000398603	ENST00000493140		TCGA	RV	SKCM	TCGA-EE-A2GM-06B	GSTP1	chr11	67354121	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000498765	ENST00000371917		TCGA	RV	SKCM	TCGA-EE-A2GM-06B	GSTP1	chr11	67354121	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000498765	ENST00000493140		TCGA	RV	SKCM	TCGA-EE-A2GM-06B	GSTP1	chr11	67354121	+	ARFGEF2	chr20	47615777	+
In-frame	ENST00000255681	ENST00000394532		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
In-frame	ENST00000255681	ENST00000309032		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
5CDS-intron	ENST00000255681	ENST00000544785		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
5CDS-intron	ENST00000255681	ENST00000394531		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
5UTR-3CDS	ENST00000538595	ENST00000394532		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
5UTR-3CDS	ENST00000538595	ENST00000309032		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
5UTR-intron	ENST00000538595	ENST00000544785		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
5UTR-intron	ENST00000538595	ENST00000394531		TCGA	RV	SKCM	TCGA-ER-A19T-06A	MACROD1	chr11	63918711	-	BAD	chr11	64039275	-
Frame-shit	ENST00000521198	ENST00000288986		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000521198	ENST00000481752		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000521198	ENST00000469404		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000522398	ENST00000288986		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000522398	ENST00000481752		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000522398	ENST00000469404		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
intron-3CDS	ENST00000520976	ENST00000288986		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
intron-3CDS	ENST00000520976	ENST00000481752		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
intron-3CDS	ENST00000520976	ENST00000469404		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000396596	ENST00000288986		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000396596	ENST00000481752		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000396596	ENST00000469404		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000345714	ENST00000288986		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000345714	ENST00000481752		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000345714	ENST00000469404		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
intron-3CDS	ENST00000521435	ENST00000288986		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
intron-3CDS	ENST00000521435	ENST00000481752		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
intron-3CDS	ENST00000521435	ENST00000469404		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	SGK3	chr8	67755782	+	NCK1	chr3	136667101	+
Frame-shit	ENST00000216160	ENST00000403565		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000216160	ENST00000313237		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000216160	ENST00000396103		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000216160	ENST00000404079		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
5CDS-intron	ENST00000216160	ENST00000447824		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
5CDS-intron	ENST00000216160	ENST00000462631		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000331454	ENST00000403565		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000331454	ENST00000313237		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000331454	ENST00000396103		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000331454	ENST00000404079		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
5CDS-intron	ENST00000331454	ENST00000447824		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
5CDS-intron	ENST00000331454	ENST00000462631		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
intron-3CDS	ENST00000488859	ENST00000403565		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
intron-3CDS	ENST00000488859	ENST00000313237		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
intron-3CDS	ENST00000488859	ENST00000396103		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
intron-3CDS	ENST00000488859	ENST00000404079		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
intron-intron	ENST00000488859	ENST00000447824		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
intron-intron	ENST00000488859	ENST00000462631		TCGA	RV	SKCM	TCGA-ER-A19C-06A	TAB1	chr22	39813854	+	PHF21B	chr22	45281818	-
Frame-shit	ENST00000399537	ENST00000456951		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	TNRC18	chr7	5413686	-	TSGA13	chr7	130356628	-
Frame-shit	ENST00000399537	ENST00000356588		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	TNRC18	chr7	5413686	-	TSGA13	chr7	130356628	-
Frame-shit	ENST00000430969	ENST00000456951		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	TNRC18	chr7	5413686	-	TSGA13	chr7	130356628	-
Frame-shit	ENST00000430969	ENST00000356588		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	TNRC18	chr7	5413686	-	TSGA13	chr7	130356628	-
intron-3CDS	ENST00000399434	ENST00000456951		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	TNRC18	chr7	5413686	-	TSGA13	chr7	130356628	-
intron-3CDS	ENST00000399434	ENST00000356588		TCGA	RV	SKCM	TCGA-FS-A1ZY-06A	TNRC18	chr7	5413686	-	TSGA13	chr7	130356628	-
In-frame	ENST00000543727	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000543727	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000543727	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000543727	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000543727	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000543727	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000543727	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000550559	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000550559	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000550559	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000550559	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000550559	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000550559	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000550559	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000548851	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000548851	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000548851	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548851	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548851	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548851	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000548851	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000454289	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000454289	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000454289	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000454289	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000454289	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000454289	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000454289	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000540550	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000540550	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000540550	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000540550	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000540550	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000540550	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000540550	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000323833	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000323833	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000323833	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000323833	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000323833	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000323833	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000323833	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000350762	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
Frame-shit	ENST00000350762	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000350762	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000350762	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000350762	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000350762	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
5CDS-intron	ENST00000350762	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-3CDS	ENST00000497617	ENST00000403681		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-3CDS	ENST00000497617	ENST00000541363		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-3CDS	ENST00000497617	ENST00000393577		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-intron	ENST00000497617	ENST00000393578		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-intron	ENST00000497617	ENST00000425208		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-intron	ENST00000497617	ENST00000536545		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
3UTR-intron	ENST00000497617	ENST00000354636		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TSFM	chr12	58180074	+	HMGA2	chr12	66345163	+
In-frame	ENST00000355653	ENST00000589222		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000407086		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000390652		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000408905		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000588462		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000585744		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000588874		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
5CDS-intron	ENST00000355653	ENST00000585812		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-3CDS	ENST00000587173	ENST00000589222		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000407086		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000390652		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000408905		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000588462		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000585744		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000588874		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000587173	ENST00000585812		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-3CDS	ENST00000420567	ENST00000589222		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000407086		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000390652		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000408905		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000588462		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000585744		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000588874		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
intron-intron	ENST00000420567	ENST00000585812		TCGA	RV	SKCM	TCGA-ER-A19W-06A	VAT1	chr17	41166624	-	BCAS3	chr17	59465980	+
Frame-shit	ENST00000367800	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
Frame-shit	ENST00000367800	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
5CDS-intron	ENST00000367800	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
In-frame	ENST00000457866	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
In-frame	ENST00000457866	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
5CDS-intron	ENST00000457866	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
Frame-shit	ENST00000417892	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
Frame-shit	ENST00000417892	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
5CDS-intron	ENST00000417892	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
In-frame	ENST00000327035	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
In-frame	ENST00000327035	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
5CDS-intron	ENST00000327035	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000488690	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000488690	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-intron	ENST00000488690	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000367798	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000367798	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-intron	ENST00000367798	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000528103	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000528103	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-intron	ENST00000528103	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000534469	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000534469	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-intron	ENST00000534469	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000531527	ENST00000298699		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-3CDS	ENST00000531527	ENST00000550553		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
intron-intron	ENST00000531527	ENST00000546547		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	AHI1	chr6	135748305	-	C12orf50	chr12	88388520	-
5CDS-5UTR	ENST00000255194	ENST00000380345		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
5CDS-intron	ENST00000255194	ENST00000515007		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
5CDS-intron	ENST00000255194	ENST00000515349		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
5CDS-5UTR	ENST00000519295	ENST00000380345		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
5CDS-intron	ENST00000519295	ENST00000515007		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
5CDS-intron	ENST00000519295	ENST00000515349		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
intron-5UTR	ENST00000523204	ENST00000380345		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
intron-intron	ENST00000523204	ENST00000515007		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
intron-intron	ENST00000523204	ENST00000515349		TCGA	RV	SKCM	TCGA-GN-A26D-06A	AP3B1	chr5	77536686	-	LHFPL2	chr5	77860694	-
Frame-shit	ENST00000309982	ENST00000520539		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000309982	ENST00000220959		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000309982	ENST00000518205		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000309982	ENST00000521922		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-intron	ENST00000309982	ENST00000519528		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000438105	ENST00000520539		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000438105	ENST00000220959		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000438105	ENST00000518205		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000438105	ENST00000521922		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-intron	ENST00000438105	ENST00000519528		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000297574	ENST00000520539		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000297574	ENST00000220959		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000297574	ENST00000518205		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000297574	ENST00000521922		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-intron	ENST00000297574	ENST00000519528		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000330955	ENST00000520539		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000330955	ENST00000220959		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000330955	ENST00000518205		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000330955	ENST00000521922		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-intron	ENST00000330955	ENST00000519528		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000306391	ENST00000520539		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
Frame-shit	ENST00000306391	ENST00000220959		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000306391	ENST00000518205		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-5UTR	ENST00000306391	ENST00000521922		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
5CDS-intron	ENST00000306391	ENST00000519528		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
intron-3CDS	ENST00000523754	ENST00000520539		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
intron-3CDS	ENST00000523754	ENST00000220959		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
intron-5UTR	ENST00000523754	ENST00000518205		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
intron-5UTR	ENST00000523754	ENST00000521922		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
intron-intron	ENST00000523754	ENST00000519528		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	BAALC	chr8	104153285	+	UBR5	chr8	103285000	-
intron-3CDS	ENST00000425759	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000425759	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000425759	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000425759	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000425759	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000292733	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000292733	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000292733	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000292733	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000292733	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000542773	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000542773	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000542773	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000542773	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000542773	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000263205	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000263205	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000263205	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000263205	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000263205	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000406969	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000406969	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000406969	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000406969	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000406969	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000382974	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000382974	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000382974	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000382974	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000382974	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000541476	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
In-frame	ENST00000541476	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000541476	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000541476	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
5CDS-intron	ENST00000541476	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000478831	ENST00000505113		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-3CDS	ENST00000478831	ENST00000316418		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000478831	ENST00000512529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000478831	ENST00000515206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-intron	ENST00000478831	ENST00000506456		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	MED15	chr22	20909435	+	AHRR	chr5	376725	+
intron-5UTR	ENST00000368715	ENST00000228741		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000368715	ENST00000552142		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-intron	ENST00000368715	ENST00000549529		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000481009	ENST00000228741		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000481009	ENST00000552142		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-intron	ENST00000481009	ENST00000549529		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000354332	ENST00000228741		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000354332	ENST00000552142		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-intron	ENST00000354332	ENST00000549529		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000368716	ENST00000228741		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000368716	ENST00000552142		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-intron	ENST00000368716	ENST00000549529		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000368714	ENST00000228741		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000368714	ENST00000552142		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
5CDS-intron	ENST00000368714	ENST00000549529		TCGA	RV	SKCM	TCGA-DA-A1I1-06A	S100A4	chr1	153516097	-	ELK3	chr12	96588323	+
intron-intron	ENST00000522243	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
5CDS-intron	ENST00000422546	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
5CDS-intron	ENST00000260130	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
intron-intron	ENST00000447182	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
intron-intron	ENST00000413219	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
intron-intron	ENST00000424270	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
5CDS-intron	ENST00000523483	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
intron-intron	ENST00000520168	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
intron-intron	ENST00000447267	ENST00000202816		TCGA	RV	SKCM	TCGA-ER-A19H-06A	SDCBP	chr8	59495417	+	ESF1	chr20	13743523	-
5CDS-5UTR	ENST00000344293	ENST00000375400		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	TAF3	chr10	7866523	+	SVIL	chr10	29858241	-
5CDS-5UTR	ENST00000344293	ENST00000375398		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	TAF3	chr10	7866523	+	SVIL	chr10	29858241	-
5CDS-5UTR	ENST00000344293	ENST00000355867		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	TAF3	chr10	7866523	+	SVIL	chr10	29858241	-
5CDS-intron	ENST00000344293	ENST00000535393		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	TAF3	chr10	7866523	+	SVIL	chr10	29858241	-
5CDS-intron	ENST00000344293	ENST00000460007		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	TAF3	chr10	7866523	+	SVIL	chr10	29858241	-
5CDS-intron	ENST00000344293	ENST00000538146		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	TAF3	chr10	7866523	+	SVIL	chr10	29858241	-
In-frame	ENST00000558170	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000558170	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000558170	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000558170	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
5CDS-intron	ENST00000558170	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
Frame-shit	ENST00000409487	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
Frame-shit	ENST00000409487	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
Frame-shit	ENST00000409487	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
Frame-shit	ENST00000409487	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
5CDS-intron	ENST00000409487	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000303660	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000303660	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000303660	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
In-frame	ENST00000303660	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
5CDS-intron	ENST00000303660	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000539609	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000539609	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000539609	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000539609	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-intron	ENST00000539609	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000493689	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000493689	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000493689	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000493689	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-intron	ENST00000493689	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000470879	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000470879	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000470879	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000470879	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-intron	ENST00000470879	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000465070	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000465070	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000465070	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000465070	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-intron	ENST00000465070	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000462355	ENST00000336199		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000462355	ENST00000366540		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000462355	ENST00000366539		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-3CDS	ENST00000462355	ENST00000263826		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
intron-intron	ENST00000462355	ENST00000492957		TCGA	RV	SKCM	TCGA-ER-A197-06A	ZEB2	chr2	145182363	-	AKT3	chr1	243708899	-
Frame-shit	ENST00000324198	ENST00000263253		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADRBK2	chr22	25961120	+	EP300	chr22	41550999	+
5CDS-5UTR	ENST00000346798	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000346798	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000346798	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000346798	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000354192	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000354192	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000354192	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000354192	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000348990	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000348990	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000348990	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000348990	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000357903	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000357903	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000357903	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000357903	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000358918	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000358918	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000358918	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000358918	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000359726	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000359726	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000359726	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000359726	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000448388	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000448388	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000448388	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000448388	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000440126	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000440126	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000440126	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
intron-5UTR	ENST00000440126	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000439274	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000439274	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000439274	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5CDS-5UTR	ENST00000439274	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5UTR-5UTR	ENST00000474136	ENST00000470450		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5UTR-5UTR	ENST00000474136	ENST00000286788		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5UTR-5UTR	ENST00000474136	ENST00000542732		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
5UTR-5UTR	ENST00000474136	ENST00000540844		TCGA	RV	SKCM	TCGA-ER-A42L-06A	APP	chr21	27542882	-	CCT8	chr21	30442658	-
In-frame	ENST00000355312	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000355312	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000356259	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000356259	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000338373	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000338373	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000360185	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000360185	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000343646	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000343646	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000354574	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000354574	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000457474	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000457474	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000361006	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000361006	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000553118	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000553118	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000551209	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000551209	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
intron-3CDS	ENST00000548655	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
intron-3UTR	ENST00000548655	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000547815	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000547815	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
In-frame	ENST00000320063	ENST00000389501		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-3UTR	ENST00000320063	ENST00000474652		TCGA	RV	SKCM	TCGA-FW-A3TV-06A	GIT2	chr12	110429432	-	SMYD5	chr2	73445989	+
5CDS-intron	ENST00000513610	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
5CDS-intron	ENST00000513610	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
5CDS-intron	ENST00000513610	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
5CDS-intron	ENST00000507288	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
5CDS-intron	ENST00000507288	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
5CDS-intron	ENST00000507288	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000274203	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000274203	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000274203	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000515803	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000515803	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000515803	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000427430	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000427430	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000427430	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000505695	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000505695	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000505695	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000512061	ENST00000543096		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000512061	ENST00000543111		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
intron-intron	ENST00000512061	ENST00000327337		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	MYO10	chr5	16818118	-	FAM186A	chr12	50750031	-
5UTR-intron	ENST00000588552	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000588552	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-5UTR	ENST00000588552	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000262963	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000262963	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-5UTR	ENST00000262963	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000372412	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000372412	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-5UTR	ENST00000372412	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000348075	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000348075	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-5UTR	ENST00000348075	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000357368	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000357368	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-5UTR	ENST00000357368	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000353284	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-intron	ENST00000353284	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5UTR-5UTR	ENST00000353284	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000587303	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000587303	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000587303	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000588012	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000588012	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000588012	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000592099	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000592099	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000592099	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000590509	ENST00000431232		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000590509	ENST00000250930		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000590509	ENST00000476735		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5340675	-	TMEM8A	chr16	434396	-
5CDS-intron	ENST00000233143	ENST00000261531		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	TMSB10	chr2	85133795	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000233143	ENST00000554775		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	TMSB10	chr2	85133795	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000233143	ENST00000555761		TCGA	RV	SKCM	TCGA-D9-A3Z3-06A	TMSB10	chr2	85133795	+	SNW1	chr14	78189203	-
Frame-shit	ENST00000399537	ENST00000399322		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399537	ENST00000258767		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399537	ENST00000403951		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399537	ENST00000402815		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399537	ENST00000407950		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399537	ENST00000444700		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399537	ENST00000406247		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
5CDS-intron	ENST00000399537	ENST00000403963		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000399322		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000258767		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000403951		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000402815		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000407950		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000444700		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000430969	ENST00000406247		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
5CDS-intron	ENST00000430969	ENST00000403963		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000399322		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000258767		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000403951		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000402815		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000407950		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000444700		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
Frame-shit	ENST00000399434	ENST00000406247		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
5CDS-intron	ENST00000399434	ENST00000403963		TCGA	RV	SKCM	TCGA-FR-A729-06A	TNRC18	chr7	5434071	-	DGKB	chr7	14217776	-
intron-5UTR	ENST00000437089	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000437089	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000437089	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000437089	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000437089	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000437089	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000437089	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000437089	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000454678	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-3UTR	ENST00000454678	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000453195	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-3UTR	ENST00000453195	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-5UTR	ENST00000487829	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
5UTR-3UTR	ENST00000487829	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456770	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000456770	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000439094	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000439094	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425523	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000425523	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000484938	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000484938	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438908	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000438908	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000455000	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000455000	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000436219	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000436219	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000475230	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000475230	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000433314	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000433314	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000447711	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000447711	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000456093	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000456093	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000486529	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000486529	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000438384	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000438384	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000432326	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000432326	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000425831	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000425831	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000481596	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000481596	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000463977	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000463977	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000383607	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000383607	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000327357	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000327357	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000396558	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000396558	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000450392	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000450392	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000415923	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000415923	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000428486	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000428486	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477569	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000477569	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000422349	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000422349	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000445259	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000445259	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000427535	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000427535	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000372445		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000436109		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000372444		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000372449		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000259751		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000372452		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-5UTR	ENST00000477353	ENST00000438588		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
intron-3UTR	ENST00000477353	ENST00000483640		TCGA	RV	SKCM	TCGA-FS-A1ZN-01A	TRIM26	chr6	30181082	-	TJAP1	chr6	43465619	+
In-frame	ENST00000335870	ENST00000282096		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	ZNF212	chr7	148947898	+	PDE3B	chr11	14839729	+
In-frame	ENST00000335870	ENST00000455098		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	ZNF212	chr7	148947898	+	PDE3B	chr11	14839729	+
5CDS-intron	ENST00000335870	ENST00000534317		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	ZNF212	chr7	148947898	+	PDE3B	chr11	14839729	+
5UTR-intron	ENST00000337198	ENST00000341084		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000337198	ENST00000519449		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000337198	ENST00000523255		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000347770	ENST00000341084		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000347770	ENST00000519449		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000347770	ENST00000523255		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000522311	ENST00000341084		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000522311	ENST00000519449		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
5UTR-intron	ENST00000522311	ENST00000523255		TCGA	RV	SKCM	TCGA-FR-A2OS-01A	AZIN1	chr8	103870241	-	RNF19A	chr8	101325600	-
Frame-shit	ENST00000327787	ENST00000331134		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000327787	ENST00000374747		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000327787	ENST00000539314		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000327787	ENST00000572760		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000327787	ENST00000573876		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000327787	ENST00000574344		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
Frame-shit	ENST00000425898	ENST00000331134		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000425898	ENST00000374747		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000425898	ENST00000539314		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000425898	ENST00000572760		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000425898	ENST00000573876		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000425898	ENST00000574344		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
Frame-shit	ENST00000537152	ENST00000331134		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000537152	ENST00000374747		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000537152	ENST00000539314		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000537152	ENST00000572760		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000537152	ENST00000573876		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
5CDS-intron	ENST00000537152	ENST00000574344		TCGA	RV	SKCM	TCGA-W3-A828-06A	C17orf70	chr17	79511030	-	NPLOC4	chr17	79526442	-
In-frame	ENST00000369083	ENST00000392870		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
5CDS-5UTR	ENST00000369083	ENST00000369108		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
5CDS-intron	ENST00000369083	ENST00000473264		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
In-frame	ENST00000361976	ENST00000392870		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
5CDS-5UTR	ENST00000361976	ENST00000369108		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
5CDS-intron	ENST00000361976	ENST00000473264		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-3CDS	ENST00000369081	ENST00000392870		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-5UTR	ENST00000369081	ENST00000369108		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-intron	ENST00000369081	ENST00000473264		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-3CDS	ENST00000369080	ENST00000392870		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-5UTR	ENST00000369080	ENST00000369108		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-intron	ENST00000369080	ENST00000473264		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-3CDS	ENST00000490818	ENST00000392870		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-5UTR	ENST00000490818	ENST00000369108		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-intron	ENST00000490818	ENST00000473264		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	INPP5F	chr10	121485871	+	GRK5	chr10	121140327	+
intron-5UTR	ENST00000337755	ENST00000499810		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000337755	ENST00000360541		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000337755	ENST00000503014		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000337755	ENST00000514005		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
5CDS-5UTR	ENST00000292591	ENST00000499810		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
5CDS-5UTR	ENST00000292591	ENST00000360541		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
5CDS-5UTR	ENST00000292591	ENST00000503014		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
5CDS-5UTR	ENST00000292591	ENST00000514005		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000521305	ENST00000499810		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000521305	ENST00000360541		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000521305	ENST00000503014		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
intron-5UTR	ENST00000521305	ENST00000514005		TCGA	RV	SKCM	TCGA-EE-A2M7-06A	MGAT4B	chr5	179233487	-	ETF1	chr5	137854556	-
Frame-shit	ENST00000310298	ENST00000345382		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000310298	ENST00000569704		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000557957	ENST00000345382		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000557957	ENST00000569704		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000394553	ENST00000345382		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000394553	ENST00000569704		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000339708	ENST00000345382		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000339708	ENST00000569704		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
3UTR-3CDS	ENST00000557819	ENST00000345382		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
3UTR-3CDS	ENST00000557819	ENST00000569704		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	PDE8A	chr15	85643429	+	BNC1	chr15	83926878	-
Frame-shit	ENST00000398743	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000398743	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000398743	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000398743	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000398743	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
In-frame	ENST00000398741	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
In-frame	ENST00000398741	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
In-frame	ENST00000398741	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
In-frame	ENST00000398741	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000398741	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000543184	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000543184	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000543184	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000543184	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000543184	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000405655	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000405655	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000405655	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000405655	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000405655	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000539862	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000539862	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000539862	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000539862	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
5CDS-intron	ENST00000539862	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000402697	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000402697	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000402697	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000402697	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-intron	ENST00000402697	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000424204	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000424204	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000424204	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000424204	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-intron	ENST00000424204	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000485532	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000485532	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000485532	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000485532	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-intron	ENST00000485532	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000406503	ENST00000391976		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000406503	ENST00000310931		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000406503	ENST00000391975		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-3CDS	ENST00000406503	ENST00000427183		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
intron-intron	ENST00000406503	ENST00000476807		TCGA	RV	SKCM	TCGA-EB-A3Y6-01A	PRAME	chr22	22890128	-	HDLBP	chr2	242202277	-
Frame-shit	ENST00000307792	ENST00000223208		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
5CDS-intron	ENST00000307792	ENST00000541543		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
5CDS-intron	ENST00000307792	ENST00000343969		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
5CDS-intron	ENST00000307792	ENST00000489512		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
5CDS-intron	ENST00000307792	ENST00000495702		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
intron-3CDS	ENST00000427262	ENST00000223208		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
intron-intron	ENST00000427262	ENST00000541543		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
intron-intron	ENST00000427262	ENST00000343969		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
intron-intron	ENST00000427262	ENST00000489512		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
intron-intron	ENST00000427262	ENST00000495702		TCGA	RV	SKCM	TCGA-FS-A1ZB-06A	SEMA3E	chr7	83277744	-	CEP41	chr7	130056807	-
Frame-shit	ENST00000344204	ENST00000264938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
Frame-shit	ENST00000344204	ENST00000514375		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
Frame-shit	ENST00000537187	ENST00000264938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
Frame-shit	ENST00000537187	ENST00000514375		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
Frame-shit	ENST00000509967	ENST00000264938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
Frame-shit	ENST00000509967	ENST00000514375		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
intron-3CDS	ENST00000515710	ENST00000264938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
intron-3CDS	ENST00000515710	ENST00000514375		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
intron-3CDS	ENST00000344135	ENST00000264938		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
intron-3CDS	ENST00000344135	ENST00000514375		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TRIO	chr5	14394239	+	SLC9A3	chr5	492186	-
3UTR-intron	ENST00000331595	ENST00000408982		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
3UTR-intron	ENST00000331595	ENST00000262477		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
3UTR-intron	ENST00000331595	ENST00000537505		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
3UTR-intron	ENST00000331595	ENST00000546142		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
3UTR-intron	ENST00000331595	ENST00000341923		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
3UTR-intron	ENST00000331595	ENST00000570487		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000480756	ENST00000408982		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000480756	ENST00000262477		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000480756	ENST00000537505		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000480756	ENST00000546142		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000480756	ENST00000341923		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000480756	ENST00000570487		TCGA	RV	SKCM	TCGA-EE-A2A5-06A	BGN	chrX	152775004	+	RABEP1	chr17	5283828	+
5UTR-5UTR	ENST00000609654	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000609654	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000609654	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000609654	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000609383	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000609383	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000609383	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000609383	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000536186	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000536186	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000536186	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000536186	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000435240	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000435240	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000435240	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000435240	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000265334	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000265334	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000265334	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-intron	ENST00000265334	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000523054	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000523054	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000523054	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000523054	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000521118	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000521118	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000521118	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-intron	ENST00000521118	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000523832	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000523832	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000523832	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-intron	ENST00000523832	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000521755	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000521755	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000521755	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000521755	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000435211	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000435211	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-5UTR	ENST00000435211	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
intron-intron	ENST00000435211	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000522501	ENST00000394817		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000522501	ENST00000265195		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-5UTR	ENST00000522501	ENST00000509534		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
5UTR-intron	ENST00000522501	ENST00000515008		TCGA	RV	SKCM	TCGA-ER-A2NH-06A	CDKL3	chr5	133706689	-	SIL1	chr5	138463542	-
In-frame	ENST00000377809	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000377809	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000377809	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000402010	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000402010	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000402010	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000413835	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000413835	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000413835	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5UTR-3CDS	ENST00000377810	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5UTR-intron	ENST00000377810	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5UTR-intron	ENST00000377810	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000315032	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000315032	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000315032	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000508192	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000508192	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000508192	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000361128	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000361128	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000361128	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000350490	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000350490	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000350490	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000502399	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000502399	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
5CDS-intron	ENST00000502399	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-3CDS	ENST00000509502	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000509502	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000509502	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-3CDS	ENST00000513765	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000513765	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000513765	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-3CDS	ENST00000408948	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000408948	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000408948	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-3CDS	ENST00000425897	ENST00000301887		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000425897	ENST00000435842		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
intron-intron	ENST00000425897	ENST00000527716		TCGA	RV	SKCM	TCGA-GN-A26D-06A	MARK2	chr11	63607032	+	BATF2	chr11	64762021	-
In-frame	ENST00000296802	ENST00000522353		TCGA	RV	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA3	chr5	140358534	+
5CDS-intron	ENST00000296802	ENST00000532566		TCGA	RV	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA3	chr5	140358534	+
3UTR-3CDS	ENST00000513356	ENST00000522353		TCGA	RV	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA3	chr5	140358534	+
3UTR-intron	ENST00000513356	ENST00000532566		TCGA	RV	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA3	chr5	140358534	+
Frame-shit	ENST00000282096	ENST00000335870		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	PDE3B	chr11	14856641	+	ZNF212	chr7	148947772	+
Frame-shit	ENST00000455098	ENST00000335870		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	PDE3B	chr11	14856641	+	ZNF212	chr7	148947772	+
intron-3CDS	ENST00000534317	ENST00000335870		TCGA	RV	SKCM	TCGA-WE-A8ZM-06A	PDE3B	chr11	14856641	+	ZNF212	chr7	148947772	+
Frame-shit	ENST00000310298	ENST00000318445		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
Frame-shit	ENST00000310298	ENST00000424469		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
5CDS-intron	ENST00000310298	ENST00000555549		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
intron-3CDS	ENST00000557957	ENST00000318445		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
intron-3CDS	ENST00000557957	ENST00000424469		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
intron-intron	ENST00000557957	ENST00000555549		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
Frame-shit	ENST00000394553	ENST00000318445		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
Frame-shit	ENST00000394553	ENST00000424469		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
5CDS-intron	ENST00000394553	ENST00000555549		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
Frame-shit	ENST00000339708	ENST00000318445		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
Frame-shit	ENST00000339708	ENST00000424469		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
5CDS-intron	ENST00000339708	ENST00000555549		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
intron-3CDS	ENST00000557819	ENST00000318445		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
intron-3CDS	ENST00000557819	ENST00000424469		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
intron-intron	ENST00000557819	ENST00000555549		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	PDE8A	chr15	85525579	+	SLCO3A1	chr15	92638111	+
5UTR-3CDS	ENST00000375114	ENST00000378423		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
5UTR-3CDS	ENST00000375114	ENST00000353224		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
5UTR-3CDS	ENST00000375114	ENST00000378429		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
5UTR-3CDS	ENST00000246194	ENST00000378423		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
5UTR-3CDS	ENST00000246194	ENST00000353224		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
5UTR-3CDS	ENST00000246194	ENST00000378429		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
intron-3CDS	ENST00000493399	ENST00000378423		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
intron-3CDS	ENST00000493399	ENST00000353224		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
intron-3CDS	ENST00000493399	ENST00000378429		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	RALY	chr20	32619410	+	PAK7	chr20	9538381	-
5CDS-5UTR	ENST00000409402	ENST00000585331		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000409402	ENST00000317615		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000409402	ENST00000590217		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-intron	ENST00000409402	ENST00000589405		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000410092	ENST00000585331		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000410092	ENST00000317615		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000410092	ENST00000590217		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-intron	ENST00000410092	ENST00000589405		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000309836	ENST00000585331		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000309836	ENST00000317615		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000309836	ENST00000590217		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-intron	ENST00000309836	ENST00000589405		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000453447	ENST00000585331		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000453447	ENST00000317615		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000453447	ENST00000590217		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-intron	ENST00000453447	ENST00000589405		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5UTR-5UTR	ENST00000383356	ENST00000585331		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5UTR-5UTR	ENST00000383356	ENST00000317615		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5UTR-5UTR	ENST00000383356	ENST00000590217		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5UTR-intron	ENST00000383356	ENST00000589405		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
intron-5UTR	ENST00000464481	ENST00000585331		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
intron-5UTR	ENST00000464481	ENST00000317615		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
intron-5UTR	ENST00000464481	ENST00000590217		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
intron-intron	ENST00000464481	ENST00000589405		TCGA	RV	SKCM	TCGA-EE-A2GB-06A	SPIRE1	chr18	12635061	-	PSMG2	chr18	12706549	+
5CDS-5UTR	ENST00000290913	ENST00000264991		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000290913	ENST00000356232		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000290913	ENST00000493720		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000290913	ENST00000473651		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000290913	ENST00000494238		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-intron	ENST00000290913	ENST00000480955		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000508789	ENST00000264991		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000508789	ENST00000356232		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000508789	ENST00000493720		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000508789	ENST00000473651		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-5UTR	ENST00000508789	ENST00000494238		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5CDS-intron	ENST00000508789	ENST00000480955		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
intron-5UTR	ENST00000515867	ENST00000264991		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
intron-5UTR	ENST00000515867	ENST00000356232		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
intron-5UTR	ENST00000515867	ENST00000493720		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
intron-5UTR	ENST00000515867	ENST00000473651		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
intron-5UTR	ENST00000515867	ENST00000494238		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
intron-intron	ENST00000515867	ENST00000480955		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	CHCHD6	chr3	126449473	+	UBA5	chr3	132384667	+
5UTR-3CDS	ENST00000367922	ENST00000367749		TCGA	RV	SKCM	TCGA-EB-A430-01A	DDR2	chr1	162625164	+	FMO4	chr1	171293277	+
5UTR-3UTR	ENST00000367922	ENST00000462992		TCGA	RV	SKCM	TCGA-EB-A430-01A	DDR2	chr1	162625164	+	FMO4	chr1	171293277	+
5UTR-3CDS	ENST00000367921	ENST00000367749		TCGA	RV	SKCM	TCGA-EB-A430-01A	DDR2	chr1	162625164	+	FMO4	chr1	171293277	+
5UTR-3UTR	ENST00000367921	ENST00000462992		TCGA	RV	SKCM	TCGA-EB-A430-01A	DDR2	chr1	162625164	+	FMO4	chr1	171293277	+
Frame-shit	ENST00000373325	ENST00000341197		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000373325	ENST00000423191		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000373325	ENST00000372999		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000373325	ENST00000358131		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-intron	ENST00000373325	ENST00000435864		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
Frame-shit	ENST00000252011	ENST00000341197		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000252011	ENST00000423191		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000252011	ENST00000372999		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000252011	ENST00000358131		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-intron	ENST00000252011	ENST00000435864		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
Frame-shit	ENST00000373323	ENST00000341197		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000373323	ENST00000423191		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000373323	ENST00000372999		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000373323	ENST00000358131		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
5CDS-intron	ENST00000373323	ENST00000435864		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	DHX35	chr20	37591050	+	TOX2	chr20	42602007	+
In-frame	ENST00000394287	ENST00000476049		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
In-frame	ENST00000394287	ENST00000394052		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
In-frame	ENST00000300651	ENST00000476049		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
In-frame	ENST00000300651	ENST00000394052		TCGA	RV	SKCM	TCGA-ER-A2NF-01A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
5UTR-3CDS	ENST00000351960	ENST00000334126		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000351960	ENST00000313663		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000351960	ENST00000542452		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000351960	ENST00000539061		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-3CDS	ENST00000358965	ENST00000334126		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000358965	ENST00000313663		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000358965	ENST00000542452		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000358965	ENST00000539061		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-3CDS	ENST00000393695	ENST00000334126		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000393695	ENST00000313663		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000393695	ENST00000542452		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000393695	ENST00000539061		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-3CDS	ENST00000543450	ENST00000334126		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000543450	ENST00000313663		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000543450	ENST00000542452		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000543450	ENST00000539061		TCGA	RV	SKCM	TCGA-DA-A95V-06A	NUMA1	chr11	71780888	-	C2CD3	chr11	73724570	-
In-frame	ENST00000348657	ENST00000425759		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
In-frame	ENST00000348657	ENST00000292733		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000348657	ENST00000542773		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000348657	ENST00000263205		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000348657	ENST00000406969		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000348657	ENST00000382974		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000348657	ENST00000541476		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000348657	ENST00000478831		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
In-frame	ENST00000252115	ENST00000425759		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
In-frame	ENST00000252115	ENST00000292733		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000252115	ENST00000542773		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000252115	ENST00000263205		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000252115	ENST00000406969		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000252115	ENST00000382974		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000252115	ENST00000541476		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000252115	ENST00000478831		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
In-frame	ENST00000339677	ENST00000425759		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
In-frame	ENST00000339677	ENST00000292733		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000339677	ENST00000542773		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000339677	ENST00000263205		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000339677	ENST00000406969		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000339677	ENST00000382974		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000339677	ENST00000541476		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000339677	ENST00000478831		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-3CDS	ENST00000451060	ENST00000425759		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-3CDS	ENST00000451060	ENST00000292733		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000451060	ENST00000542773		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000451060	ENST00000263205		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000451060	ENST00000406969		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000451060	ENST00000382974		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000451060	ENST00000541476		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000451060	ENST00000478831		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-3CDS	ENST00000491021	ENST00000425759		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-3CDS	ENST00000491021	ENST00000292733		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000491021	ENST00000542773		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000491021	ENST00000263205		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000491021	ENST00000406969		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000491021	ENST00000382974		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000491021	ENST00000541476		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
5UTR-intron	ENST00000491021	ENST00000478831		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	POLDIP3	chr22	42998776	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000526757	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000526757	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000526757	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000526757	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000534127	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000534127	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000534127	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000534127	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000313726	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000313726	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000313726	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000313726	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000357665	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000357665	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000357665	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000357665	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000530438	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000530438	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000530438	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000530438	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000530991	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000530991	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000530991	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000530991	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000526099	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000526099	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000526099	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000526099	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000534278	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000534278	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000534278	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000534278	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000531237	ENST00000328194		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000531237	ENST00000530044		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-3CDS	ENST00000531237	ENST00000527700		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
intron-intron	ENST00000531237	ENST00000526523		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ST5	chr11	8853103	-	DENND5A	chr11	9171756	-
Frame-shit	ENST00000261776	ENST00000577730		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
Frame-shit	ENST00000261776	ENST00000299345		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
Frame-shit	ENST00000261776	ENST00000577390		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
Frame-shit	ENST00000261776	ENST00000584337		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
5CDS-intron	ENST00000261776	ENST00000580044		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000571759	ENST00000577730		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000571759	ENST00000299345		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000571759	ENST00000577390		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000571759	ENST00000584337		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-intron	ENST00000571759	ENST00000580044		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000536184	ENST00000577730		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000536184	ENST00000299345		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000536184	ENST00000577390		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-3CDS	ENST00000536184	ENST00000584337		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
intron-intron	ENST00000536184	ENST00000580044		TCGA	RV	SKCM	TCGA-ER-A196-01A	VAC14	chr16	70765398	-	CDH8	chr16	61935377	-
5CDS-3UTR	ENST00000372309	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372309	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372309	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372309	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-3UTR	ENST00000372302	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372302	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372302	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372302	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-3UTR	ENST00000247291	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000247291	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000247291	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000247291	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-3UTR	ENST00000372300	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372300	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372300	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372300	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
3UTR-3UTR	ENST00000472942	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
3UTR-5UTR	ENST00000472942	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
3UTR-5UTR	ENST00000472942	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
3UTR-5UTR	ENST00000472942	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-3UTR	ENST00000372298	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372298	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372298	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
5CDS-5UTR	ENST00000372298	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-3UTR	ENST00000372297	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372297	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372297	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372297	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-3UTR	ENST00000372312	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372312	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372312	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372312	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-3UTR	ENST00000372301	ENST00000492242		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372301	ENST00000382291		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372301	ENST00000382285		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
intron-5UTR	ENST00000372301	ENST00000608736		TCGA	RV	SKCM	TCGA-3N-A9WC-06A	AIF1L	chr9	133972250	+	NRSN2	chr20	329893	+
In-frame	ENST00000263401	ENST00000534312		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000395850		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000533403		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000351554		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000415002		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000445143		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000426650		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000437761		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000527577		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000528700		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
In-frame	ENST00000452374	ENST00000534312		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000395850		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000533403		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000351554		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000415002		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000445143		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000426650		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000437761		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000527577		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000528700		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
In-frame	ENST00000532705	ENST00000534312		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000395850		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000533403		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000351554		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000415002		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000445143		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000426650		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000437761		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000527577		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000528700		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-3CDS	ENST00000533308	ENST00000534312		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000395850		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000533403		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000351554		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000415002		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000445143		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000426650		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000437761		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000527577		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000528700		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	CD59	chr11	33720060	-
5UTR-3CDS	ENST00000217109	ENST00000355112		TCGA	RV	SKCM	TCGA-ER-A196-01A	CSTF1	chr20	54967769	+	BLM	chr15	91352367	+
5UTR-3CDS	ENST00000217109	ENST00000560509		TCGA	RV	SKCM	TCGA-ER-A196-01A	CSTF1	chr20	54967769	+	BLM	chr15	91352367	+
5UTR-3UTR	ENST00000217109	ENST00000560136		TCGA	RV	SKCM	TCGA-ER-A196-01A	CSTF1	chr20	54967769	+	BLM	chr15	91352367	+
3UTR-3CDS	ENST00000493039	ENST00000355112		TCGA	RV	SKCM	TCGA-ER-A196-01A	CSTF1	chr20	54967769	+	BLM	chr15	91352367	+
3UTR-3CDS	ENST00000493039	ENST00000560509		TCGA	RV	SKCM	TCGA-ER-A196-01A	CSTF1	chr20	54967769	+	BLM	chr15	91352367	+
3UTR-3UTR	ENST00000493039	ENST00000560136		TCGA	RV	SKCM	TCGA-ER-A196-01A	CSTF1	chr20	54967769	+	BLM	chr15	91352367	+
5UTR-intron	ENST00000401950	ENST00000401702		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000401950	ENST00000397326		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000401950	ENST00000397328		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000401950	ENST00000359787		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000401950	ENST00000406324		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000401950	ENST00000472240		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000333027	ENST00000401702		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000333027	ENST00000397326		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000333027	ENST00000397328		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000333027	ENST00000359787		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000333027	ENST00000406324		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000333027	ENST00000472240		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000323630	ENST00000401702		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000323630	ENST00000397326		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000323630	ENST00000397328		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000323630	ENST00000359787		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000323630	ENST00000406324		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000323630	ENST00000472240		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000351488	ENST00000401702		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000351488	ENST00000397326		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000351488	ENST00000397328		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000351488	ENST00000359787		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000351488	ENST00000406324		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
5UTR-intron	ENST00000351488	ENST00000472240		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
intron-intron	ENST00000406629	ENST00000401702		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
intron-intron	ENST00000406629	ENST00000397326		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
intron-intron	ENST00000406629	ENST00000397328		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
intron-intron	ENST00000406629	ENST00000359787		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
intron-intron	ENST00000406629	ENST00000406324		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
intron-intron	ENST00000406629	ENST00000472240		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
3UTR-intron	ENST00000415511	ENST00000401702		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
3UTR-intron	ENST00000415511	ENST00000397326		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
3UTR-intron	ENST00000415511	ENST00000397328		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
3UTR-intron	ENST00000415511	ENST00000359787		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
3UTR-intron	ENST00000415511	ENST00000406324		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
3UTR-intron	ENST00000415511	ENST00000472240		TCGA	RV	SKCM	TCGA-ER-A197-06A	MTMR3	chr22	30279348	+	MB	chr22	36033255	-
Frame-shit	ENST00000295874	ENST00000478300		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
Frame-shit	ENST00000295874	ENST00000295894		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
Frame-shit	ENST00000295874	ENST00000479198		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000295874	ENST00000478744		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000295874	ENST00000460711		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000295874	ENST00000465156		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
Frame-shit	ENST00000474889	ENST00000478300		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
Frame-shit	ENST00000474889	ENST00000295894		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
Frame-shit	ENST00000474889	ENST00000479198		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000474889	ENST00000478744		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000474889	ENST00000460711		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-3UTR	ENST00000474889	ENST00000465156		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
3UTR-3CDS	ENST00000495879	ENST00000478300		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
3UTR-3CDS	ENST00000495879	ENST00000295894		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
3UTR-3CDS	ENST00000495879	ENST00000479198		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
3UTR-3UTR	ENST00000495879	ENST00000478744		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
3UTR-3UTR	ENST00000495879	ENST00000460711		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
3UTR-3UTR	ENST00000495879	ENST00000465156		TCGA	RV	SKCM	TCGA-EB-A24D-01A	PTPRG	chr3	61734656	+	SYNPR	chr3	63466508	+
5CDS-intron	ENST00000336798	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	SDC3	chr1	31342314	-	CHD1	chr5	98219587	-
5CDS-intron	ENST00000336798	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	SDC3	chr1	31342314	-	CHD1	chr5	98219587	-
intron-intron	ENST00000339394	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	SDC3	chr1	31342314	-	CHD1	chr5	98219587	-
intron-intron	ENST00000339394	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	SDC3	chr1	31342314	-	CHD1	chr5	98219587	-
intron-intron	ENST00000471567	ENST00000284049		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	SDC3	chr1	31342314	-	CHD1	chr5	98219587	-
intron-intron	ENST00000471567	ENST00000511067		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	SDC3	chr1	31342314	-	CHD1	chr5	98219587	-
In-frame	ENST00000543117	ENST00000288602		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TAX1BP1	chr7	27827222	+	BRAF	chr7	140481493	-
In-frame	ENST00000265393	ENST00000288602		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TAX1BP1	chr7	27827222	+	BRAF	chr7	140481493	-
In-frame	ENST00000409980	ENST00000288602		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TAX1BP1	chr7	27827222	+	BRAF	chr7	140481493	-
In-frame	ENST00000433216	ENST00000288602		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TAX1BP1	chr7	27827222	+	BRAF	chr7	140481493	-
In-frame	ENST00000396319	ENST00000288602		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TAX1BP1	chr7	27827222	+	BRAF	chr7	140481493	-
intron-3CDS	ENST00000494033	ENST00000288602		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	TAX1BP1	chr7	27827222	+	BRAF	chr7	140481493	-
Frame-shit	ENST00000258796	ENST00000402746		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000258796	ENST00000399654		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000258796	ENST00000406869		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000258796	ENST00000265854		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
5CDS-intron	ENST00000258796	ENST00000486340		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000407643	ENST00000402746		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000407643	ENST00000399654		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000407643	ENST00000406869		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000407643	ENST00000265854		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
5CDS-intron	ENST00000407643	ENST00000486340		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000403167	ENST00000402746		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000403167	ENST00000399654		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000403167	ENST00000406869		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000403167	ENST00000265854		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-intron	ENST00000403167	ENST00000486340		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000477439	ENST00000402746		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000477439	ENST00000399654		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000477439	ENST00000406869		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-3CDS	ENST00000477439	ENST00000265854		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
intron-intron	ENST00000477439	ENST00000486340		TCGA	RV	SKCM	TCGA-FS-A1YW-06A	TTYH3	chr7	2686656	+	MAD1L1	chr7	1976533	-
Frame-shit	ENST00000526343	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000526343	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000526343	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000526343	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000526343	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000526343	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000282441	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000282441	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000282441	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000282441	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000282441	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000282441	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000537274	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000537274	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000537274	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000537274	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000537274	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000537274	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000345877	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000345877	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000345877	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000345877	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000345877	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000345877	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000531439	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000531439	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000531439	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000531439	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000531439	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000531439	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000524575	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000524575	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000524575	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000524575	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000524575	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
Frame-shit	ENST00000524575	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
intron-3CDS	ENST00000528834	ENST00000310614		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
intron-3CDS	ENST00000528834	ENST00000535529		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
intron-3CDS	ENST00000528834	ENST00000411840		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
intron-3CDS	ENST00000528834	ENST00000398483		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
intron-3CDS	ENST00000528834	ENST00000542303		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
intron-3CDS	ENST00000528834	ENST00000314282		TCGA	RV	SKCM	TCGA-EB-A82B-01A	YAP1	chr11	102033302	+	MRPL48	chr11	73574217	+
5CDS-3UTR	ENST00000306908	ENST00000591727		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF57	chr19	2901046	+	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000306908	ENST00000339133		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF57	chr19	2901046	+	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000306908	ENST00000397555		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF57	chr19	2901046	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000523428	ENST00000591727		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF57	chr19	2901046	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000523428	ENST00000339133		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF57	chr19	2901046	+	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000523428	ENST00000397555		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF57	chr19	2901046	+	NANOS3	chr19	13991256	+
Frame-shit	ENST00000338432	ENST00000242576		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000338432	ENST00000336865		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377854	ENST00000242576		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377854	ENST00000336865		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377848	ENST00000242576		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377848	ENST00000336865		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000242576		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000336865		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000242576		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000336865		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
5CDS-5UTR	ENST00000380548	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380548	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380548	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000380548	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000380548	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000380545	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000380545	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000380545	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000380545	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000380545	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000327883	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000327883	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000327883	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000327883	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000327883	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000431052	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000431052	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000431052	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000431052	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000431052	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380570	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380570	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380570	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000380570	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000380570	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380566	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380566	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000380566	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000380566	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000380566	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000276935	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000276935	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-5UTR	ENST00000276935	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000276935	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
5CDS-intron	ENST00000276935	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000496521	ENST00000537031		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000496521	ENST00000310594		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-5UTR	ENST00000496521	ENST00000397196		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000496521	ENST00000542408		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
intron-intron	ENST00000496521	ENST00000545747		TCGA	RV	SKCM	TCGA-FR-A7U9-06A	ADAMTSL1	chr9	18474293	+	WNT5B	chr12	1740464	+
In-frame	ENST00000582520	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000582520	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
In-frame	ENST00000269321	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000269321	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000400721	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000400721	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000584461	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000584461	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000541078	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000541078	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000580685	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000580685	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000581876	ENST00000376929		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000506690		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000389805		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000402874		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000510187		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000581876	ENST00000360718		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	ARHGDIA	chr17	79825598	-	SQSTM1	chr5	179250858	+
In-frame	ENST00000415149	ENST00000334256		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
5CDS-intron	ENST00000415149	ENST00000469804		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
In-frame	ENST00000402543	ENST00000334256		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
5CDS-intron	ENST00000402543	ENST00000469804		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
In-frame	ENST00000325805	ENST00000334256		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
5CDS-intron	ENST00000325805	ENST00000469804		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
In-frame	ENST00000416476	ENST00000334256		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
5CDS-intron	ENST00000416476	ENST00000469804		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
In-frame	ENST00000406780	ENST00000334256		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
5CDS-intron	ENST00000406780	ENST00000469804		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
intron-3CDS	ENST00000473542	ENST00000334256		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
intron-intron	ENST00000473542	ENST00000469804		TCGA	RV	SKCM	TCGA-D3-A2J8-06A	BBX	chr3	107466886	+	KPNA4	chr3	160227659	-
5UTR-3CDS	ENST00000064778	ENST00000356297		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000064778	ENST00000543296		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000450446	ENST00000356297		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000450446	ENST00000543296		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000356467	ENST00000356297		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000356467	ENST00000543296		TCGA	RV	SKCM	TCGA-ER-A19T-06A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
In-frame	ENST00000263379	ENST00000431365		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	IL27RA	chr19	14143315	+	RLN3	chr19	14141522	+
In-frame	ENST00000263379	ENST00000585987		TCGA	RV	SKCM	TCGA-DA-A3F5-06A	IL27RA	chr19	14143315	+	RLN3	chr19	14141522	+
intron-3CDS	ENST00000372797	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372797	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372797	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372797	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372797	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372797	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000372802	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372802	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372802	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372802	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000372802	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372792	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372792	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372792	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372792	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372792	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372798	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372798	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372798	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372798	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372798	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000340450	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000340450	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000340450	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000340450	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000340450	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-3CDS	ENST00000372805	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372805	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372805	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372805	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
5UTR-intron	ENST00000372805	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000545844		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000567887		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000372915		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000361689		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000539005		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000317713		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000564288		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-3CDS	ENST00000479759	ENST00000289893		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000479759	ENST00000536367		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000479759	ENST00000484793		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000479759	ENST00000602421		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
intron-intron	ENST00000479759	ENST00000476350		TCGA	RV	SKCM	TCGA-FS-A1ZC-06A	CAP1	chr1	40506473	+	MACF1	chr1	39934287	+
In-frame	ENST00000530927	ENST00000324331		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	GMDS	chr6	2116005	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000530927	ENST00000274680		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	GMDS	chr6	2116005	-	FARS2	chr6	5771524	+
In-frame	ENST00000380815	ENST00000324331		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	GMDS	chr6	2116005	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000380815	ENST00000274680		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	GMDS	chr6	2116005	-	FARS2	chr6	5771524	+
intron-3CDS	ENST00000467288	ENST00000324331		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	GMDS	chr6	2116005	-	FARS2	chr6	5771524	+
intron-3CDS	ENST00000467288	ENST00000274680		TCGA	RV	SKCM	TCGA-WE-A8ZT-06A	GMDS	chr6	2116005	-	FARS2	chr6	5771524	+
In-frame	ENST00000258886	ENST00000400324		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000258886	ENST00000400330		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000258886	ENST00000400319		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000258886	ENST00000400320		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000258886	ENST00000377908		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000258886	ENST00000267215		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000258886	ENST00000465066		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000560440	ENST00000400324		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000560440	ENST00000400330		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000560440	ENST00000400319		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000560440	ENST00000400320		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000560440	ENST00000377908		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
In-frame	ENST00000560440	ENST00000267215		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000560440	ENST00000465066		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000559427	ENST00000400324		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000559427	ENST00000400330		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000559427	ENST00000400319		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000559427	ENST00000400320		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000559427	ENST00000377908		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-3CDS	ENST00000559427	ENST00000267215		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
intron-5UTR	ENST00000559427	ENST00000465066		TCGA	RV	SKCM	TCGA-GN-A262-06A	IREB2	chr15	78732223	+	DIAPH3	chr13	60499004	-
5CDS-5UTR	ENST00000398246	ENST00000498485		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000398246	ENST00000259457		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000398246	ENST00000536392		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000525024	ENST00000498485		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000525024	ENST00000259457		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000525024	ENST00000536392		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000533751	ENST00000498485		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000533751	ENST00000259457		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000533751	ENST00000536392		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000530693	ENST00000498485		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000530693	ENST00000259457		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000530693	ENST00000536392		TCGA	RV	SKCM	TCGA-EB-A4OY-01A	LONRF1	chr8	12612209	-	PSMB7	chr9	127146935	-
In-frame	ENST00000330636	ENST00000324331		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000330636	ENST00000274680		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
In-frame	ENST00000468929	ENST00000324331		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000468929	ENST00000274680		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
In-frame	ENST00000464010	ENST00000324331		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000464010	ENST00000274680		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
In-frame	ENST00000480566	ENST00000324331		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000480566	ENST00000274680		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
In-frame	ENST00000500576	ENST00000324331		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
Frame-shit	ENST00000500576	ENST00000274680		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
intron-3CDS	ENST00000606472	ENST00000324331		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
intron-3CDS	ENST00000606472	ENST00000274680		TCGA	RV	SKCM	TCGA-D3-A2J9-06A	LYRM4	chr6	5260881	-	FARS2	chr6	5771524	+
In-frame	ENST00000244043	ENST00000373030		TCGA	RV	SKCM	TCGA-EE-A3AD-06A	PTGIS	chr20	48156107	-	IFT52	chr20	42232823	+
In-frame	ENST00000244043	ENST00000373039		TCGA	RV	SKCM	TCGA-EE-A3AD-06A	PTGIS	chr20	48156107	-	IFT52	chr20	42232823	+
5CDS-intron	ENST00000244043	ENST00000471199		TCGA	RV	SKCM	TCGA-EE-A3AD-06A	PTGIS	chr20	48156107	-	IFT52	chr20	42232823	+
5UTR-3CDS	ENST00000478971	ENST00000373030		TCGA	RV	SKCM	TCGA-EE-A3AD-06A	PTGIS	chr20	48156107	-	IFT52	chr20	42232823	+
5UTR-3CDS	ENST00000478971	ENST00000373039		TCGA	RV	SKCM	TCGA-EE-A3AD-06A	PTGIS	chr20	48156107	-	IFT52	chr20	42232823	+
5UTR-intron	ENST00000478971	ENST00000471199		TCGA	RV	SKCM	TCGA-EE-A3AD-06A	PTGIS	chr20	48156107	-	IFT52	chr20	42232823	+
In-frame	ENST00000265109	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000265109	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000265109	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000265109	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000265109	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000265109	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000265109	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000265109	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000265109	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000512629	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000512629	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000512629	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000512629	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000512629	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000512629	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000512629	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000512629	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000512629	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000428746	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000428746	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000428746	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000428746	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000428746	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000428746	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000428746	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000428746	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000428746	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000503673	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000503673	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000503673	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000503673	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000503673	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000503673	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000503673	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000503673	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000503673	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000515799	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000515799	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000515799	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000515799	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000515799	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000515799	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000515799	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000515799	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000515799	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000506376	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000506376	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000506376	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000506376	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000506376	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000506376	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000506376	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000506376	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000506376	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-3CDS	ENST00000507276	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
3UTR-intron	ENST00000507276	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000397449	ENST00000452135		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000397449	ENST00000393360		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000397449	ENST00000455781		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000397449	ENST00000343111		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000397449	ENST00000347470		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000397449	ENST00000397072		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
In-frame	ENST00000397449	ENST00000425491		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000397449	ENST00000539014		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
5CDS-intron	ENST00000397449	ENST00000524170		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	RAI14	chr5	34757703	+	MAPK9	chr5	179696409	-
Frame-shit	ENST00000397821	ENST00000415430		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
Frame-shit	ENST00000397821	ENST00000217957		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
5CDS-intron	ENST00000397821	ENST00000485533		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000379716	ENST00000415430		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000379716	ENST00000217957		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-intron	ENST00000379716	ENST00000485533		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000379698	ENST00000415430		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000379698	ENST00000217957		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-intron	ENST00000379698	ENST00000485533		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000541422	ENST00000415430		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000541422	ENST00000217957		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-intron	ENST00000541422	ENST00000485533		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
Frame-shit	ENST00000379697	ENST00000415430		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
Frame-shit	ENST00000379697	ENST00000217957		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
5CDS-intron	ENST00000379697	ENST00000485533		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000477102	ENST00000415430		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-3CDS	ENST00000477102	ENST00000217957		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
intron-intron	ENST00000477102	ENST00000485533		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	SH3KBP1	chrX	19854243	-	VSIG1	chrX	107301268	+
Frame-shit	ENST00000448276	ENST00000225388		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SMARCD2	chr17	61912065	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000448276	ENST00000579665		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SMARCD2	chr17	61912065	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000323347	ENST00000225388		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SMARCD2	chr17	61912065	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000323347	ENST00000579665		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SMARCD2	chr17	61912065	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000225742	ENST00000225388		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SMARCD2	chr17	61912065	-	NUFIP2	chr17	27594548	-
Frame-shit	ENST00000225742	ENST00000579665		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SMARCD2	chr17	61912065	-	NUFIP2	chr17	27594548	-
In-frame	ENST00000356805	ENST00000306357		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SPTBN1	chr2	54753703	+	STX8	chr17	9281970	-
In-frame	ENST00000356805	ENST00000574431		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SPTBN1	chr2	54753703	+	STX8	chr17	9281970	-
5CDS-intron	ENST00000356805	ENST00000573373		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SPTBN1	chr2	54753703	+	STX8	chr17	9281970	-
intron-3CDS	ENST00000333896	ENST00000306357		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SPTBN1	chr2	54753703	+	STX8	chr17	9281970	-
intron-3CDS	ENST00000333896	ENST00000574431		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SPTBN1	chr2	54753703	+	STX8	chr17	9281970	-
intron-intron	ENST00000333896	ENST00000573373		TCGA	RV	SKCM	TCGA-D3-A2JA-06A	SPTBN1	chr2	54753703	+	STX8	chr17	9281970	-
Frame-shit	ENST00000392415	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000392415	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000392415	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000410062	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000410062	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000410062	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000602710	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602710	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602710	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
intron-3CDS	ENST00000602837	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
intron-intron	ENST00000602837	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
intron-intron	ENST00000602837	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000602959	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602959	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602959	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000602475	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602475	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602475	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000602632	ENST00000359520		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602632	ENST00000561228		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000602632	ENST00000558678		TCGA	RV	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848820	+	TECPR2	chr14	102963316	+
intron-3CDS	ENST00000534695	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
intron-3CDS	ENST00000534695	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
intron-intron	ENST00000534695	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000455725	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000455725	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
5CDS-intron	ENST00000455725	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000531273	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000531273	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
5CDS-intron	ENST00000531273	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000420461	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000420461	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
5CDS-intron	ENST00000420461	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000378852	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000378852	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
5CDS-intron	ENST00000378852	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000534600	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000534600	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
5CDS-intron	ENST00000534600	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
intron-3CDS	ENST00000529334	ENST00000566442		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
intron-3CDS	ENST00000529334	ENST00000318010		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
intron-intron	ENST00000529334	ENST00000440615		TCGA	RV	SKCM	TCGA-FS-A4FB-06A	API5	chr11	43343686	+	GANC	chr15	42598744	+
In-frame	ENST00000432176	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000432176	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000432176	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-5UTR	ENST00000432176	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409923	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409923	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409923	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-5UTR	ENST00000409923	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-3CDS	ENST00000498833	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-3CDS	ENST00000498833	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-3CDS	ENST00000498833	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-5UTR	ENST00000498833	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409763	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409763	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409763	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-5UTR	ENST00000409763	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000432176	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000432176	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000432176	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-5UTR	ENST00000432176	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409923	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409923	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409923	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-5UTR	ENST00000409923	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-3CDS	ENST00000498833	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-3CDS	ENST00000498833	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-3CDS	ENST00000498833	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
intron-5UTR	ENST00000498833	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409763	ENST00000297071		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409763	ENST00000392502		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
In-frame	ENST00000409763	ENST00000538367		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-5UTR	ENST00000409763	ENST00000474586		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	FAM126A	chr7	23023563	-	TRA2A	chr7	23547154	-
5CDS-3UTR	ENST00000370314	ENST00000444631		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
5CDS-intron	ENST00000370314	ENST00000336133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
5CDS-intron	ENST00000370314	ENST00000552080		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
5CDS-3UTR	ENST00000535043	ENST00000444631		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
5CDS-intron	ENST00000535043	ENST00000336133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
5CDS-intron	ENST00000535043	ENST00000552080		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
intron-3UTR	ENST00000497894	ENST00000444631		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
intron-intron	ENST00000497894	ENST00000336133		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
intron-intron	ENST00000497894	ENST00000552080		TCGA	RV	SKCM	TCGA-GN-A26D-06A	GABRA3	chrX	151393235	-	SARNP	chr12	56146624	-
In-frame	ENST00000394287	ENST00000476049		TCGA	RV	SKCM	TCGA-ER-A2NF-06A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
In-frame	ENST00000394287	ENST00000394052		TCGA	RV	SKCM	TCGA-ER-A2NF-06A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
In-frame	ENST00000300651	ENST00000476049		TCGA	RV	SKCM	TCGA-ER-A2NF-06A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
In-frame	ENST00000300651	ENST00000394052		TCGA	RV	SKCM	TCGA-ER-A2NF-06A	MED1	chr17	37604051	-	KRT222	chr17	38818296	-
5UTR-3CDS	ENST00000356341	ENST00000393158		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
5UTR-3CDS	ENST00000356341	ENST00000302251		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000530617	ENST00000393158		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000530617	ENST00000302251		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
5UTR-3CDS	ENST00000278568	ENST00000393158		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
5UTR-3CDS	ENST00000278568	ENST00000302251		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000528203	ENST00000393158		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000528203	ENST00000302251		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000525542	ENST00000393158		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
intron-3CDS	ENST00000525542	ENST00000302251		TCGA	RV	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	PDGFD	chr11	103818452	-
Frame-shit	ENST00000331710	ENST00000398016		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TBK1	chr12	64849737	+	GRIP1	chr12	66859202	-
Frame-shit	ENST00000331710	ENST00000359742		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TBK1	chr12	64849737	+	GRIP1	chr12	66859202	-
Frame-shit	ENST00000331710	ENST00000286445		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TBK1	chr12	64849737	+	GRIP1	chr12	66859202	-
5CDS-intron	ENST00000331710	ENST00000542021		TCGA	RV	SKCM	TCGA-GN-A26D-06A	TBK1	chr12	64849737	+	GRIP1	chr12	66859202	-
Frame-shit	ENST00000458535	ENST00000296255		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	CMTM8	chr3	32280611	+	RPN1	chr3	128345675	-
Frame-shit	ENST00000458535	ENST00000497289		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	CMTM8	chr3	32280611	+	RPN1	chr3	128345675	-
5CDS-5UTR	ENST00000458535	ENST00000490166		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	CMTM8	chr3	32280611	+	RPN1	chr3	128345675	-
Frame-shit	ENST00000307526	ENST00000296255		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	CMTM8	chr3	32280611	+	RPN1	chr3	128345675	-
Frame-shit	ENST00000307526	ENST00000497289		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	CMTM8	chr3	32280611	+	RPN1	chr3	128345675	-
5CDS-5UTR	ENST00000307526	ENST00000490166		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	CMTM8	chr3	32280611	+	RPN1	chr3	128345675	-
5CDS-5UTR	ENST00000284037	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000284037	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000284037	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380943	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380943	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380943	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
intron-5UTR	ENST00000416865	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
intron-5UTR	ENST00000416865	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
intron-5UTR	ENST00000416865	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380935	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380935	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380935	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380939	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380939	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380939	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380936	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380936	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380936	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380938	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380938	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000380938	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000511297	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000511297	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000511297	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000506030	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000506030	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000506030	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000508515	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000508515	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-5UTR	ENST00000508515	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
intron-5UTR	ENST00000503913	ENST00000515518		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
intron-5UTR	ENST00000503913	ENST00000429839		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
intron-5UTR	ENST00000503913	ENST00000455884		TCGA	RV	SKCM	TCGA-D3-A2JH-06A	ERBB2IP	chr5	65350779	+	TMEM232	chr5	109760617	-
5CDS-intron	ENST00000394123	ENST00000340635		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000360047		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000507116		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000502484		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000546160		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000502575		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000358923		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000503258		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000405755		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000317118		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000394123	ENST00000503947		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000340635		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000360047		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000507116		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000502484		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000546160		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000502575		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000358923		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000503258		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000405755		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000317118		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5UTR-intron	ENST00000543466	ENST00000503947		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000340635		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000360047		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000507116		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000502484		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000546160		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000502575		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000358923		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000503258		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000405755		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000317118		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
5CDS-intron	ENST00000356245	ENST00000503947		TCGA	RV	SKCM	TCGA-D3-A51N-06A	G3BP1	chr5	151170623	+	PDE4D	chr5	59284544	-
In-frame	ENST00000543252	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000543252	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000543252	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000543252	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000543252	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000543252	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
5CDS-intron	ENST00000543252	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000344138	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000344138	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000344138	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000344138	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000344138	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000344138	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
5CDS-intron	ENST00000344138	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000540310	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000540310	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000540310	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000540310	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000540310	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000540310	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
5CDS-intron	ENST00000540310	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-3CDS	ENST00000478445	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-3CDS	ENST00000478445	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-3CDS	ENST00000478445	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-3CDS	ENST00000478445	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-3CDS	ENST00000478445	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-3CDS	ENST00000478445	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
intron-intron	ENST00000478445	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000544756	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000544756	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000544756	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000544756	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000544756	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000544756	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
5CDS-intron	ENST00000544756	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000399090	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000399090	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000399090	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000399090	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000399090	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000399090	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
5CDS-intron	ENST00000399090	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000407075	ENST00000216267		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000407075	ENST00000404034		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000407075	ENST00000404760		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000407075	ENST00000457780		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000407075	ENST00000542442		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000407075	ENST00000342989		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
5CDS-intron	ENST00000407075	ENST00000459821		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	GRAP2	chr22	40365537	+	BRD1	chr22	50192767	-
In-frame	ENST00000523731	ENST00000423620		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000523731	ENST00000433389		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000523731	ENST00000358397		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000523731	ENST00000454170		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000523731	ENST00000523347		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
In-frame	ENST00000447247	ENST00000423620		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000447247	ENST00000433389		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000447247	ENST00000358397		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000447247	ENST00000454170		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
5CDS-3UTR	ENST00000447247	ENST00000523347		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
intron-3CDS	ENST00000520845	ENST00000423620		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
intron-3UTR	ENST00000520845	ENST00000433389		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
intron-3UTR	ENST00000520845	ENST00000358397		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
intron-3UTR	ENST00000520845	ENST00000454170		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
intron-3UTR	ENST00000520845	ENST00000523347		TCGA	RV	SKCM	TCGA-EE-A181-06A	INTS8	chr8	95841254	+	ESRP1	chr8	95718153	+
Frame-shit	ENST00000389794	ENST00000366595		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
Frame-shit	ENST00000389794	ENST00000264187		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
Frame-shit	ENST00000389793	ENST00000366595		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
Frame-shit	ENST00000389793	ENST00000264187		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
3UTR-3CDS	ENST00000536965	ENST00000366595		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
3UTR-3CDS	ENST00000536965	ENST00000264187		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
intron-3CDS	ENST00000473037	ENST00000366595		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
intron-3CDS	ENST00000473037	ENST00000264187		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	LYST	chr1	235950500	-	NID1	chr1	236212289	-
Frame-shit	ENST00000284548	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000284548	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000284548	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000570156	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000570156	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000570156	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000366709	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000366709	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000366709	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000422127	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000422127	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000422127	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000366707	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000366707	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
Frame-shit	ENST00000366707	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000359599	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000359599	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000359599	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000602685	ENST00000391895		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000602685	ENST00000391894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000602685	ENST00000444842		TCGA	RV	SKCM	TCGA-YD-A89C-06A	OBSCN	chr1	228525084	+	KCNK2	chr1	215368296	+
intron-3CDS	ENST00000571914	ENST00000376929		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000571914	ENST00000506690		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000571914	ENST00000389805		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000571914	ENST00000402874		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000571914	ENST00000510187		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000571914	ENST00000360718		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000328585	ENST00000376929		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000328585	ENST00000506690		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000328585	ENST00000389805		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000328585	ENST00000402874		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000328585	ENST00000510187		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000328585	ENST00000360718		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000572675	ENST00000376929		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000572675	ENST00000506690		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000572675	ENST00000389805		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000572675	ENST00000402874		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000572675	ENST00000510187		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
intron-intron	ENST00000572675	ENST00000360718		TCGA	RV	SKCM	TCGA-FS-A1ZQ-06A	TSPAN10	chr17	79615778	+	SQSTM1	chr5	179250858	+
5CDS-5UTR	ENST00000591790	ENST00000427624		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000591790	ENST00000597582		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000504904	ENST00000427624		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000504904	ENST00000597582		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000292069	ENST00000427624		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000292069	ENST00000597582		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000342634	ENST00000427624		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5CDS-5UTR	ENST00000342634	ENST00000597582		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000589652	ENST00000427624		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
intron-5UTR	ENST00000589652	ENST00000597582		TCGA	RV	SKCM	TCGA-ER-A19M-06A	ZNF667	chr19	56973707	-	ZNF837	chr19	58881295	-
5UTR-3CDS	ENST00000218758	ENST00000394456		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000218758	ENST00000429701		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000412435	ENST00000394456		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000412435	ENST00000429701		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000592828	ENST00000394456		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000592828	ENST00000429701		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000433365	ENST00000394456		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000433365	ENST00000429701		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000590420	ENST00000394456		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
5UTR-3CDS	ENST00000590420	ENST00000429701		TCGA	RV	SKCM	TCGA-EB-A550-01A	ACP5	chr19	11688408	-	GTF2F1	chr19	6389648	-
In-frame	ENST00000311172	ENST00000294309		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000311172	ENST00000542467		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
5CDS-3UTR	ENST00000311172	ENST00000442692		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000409314	ENST00000294309		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000409314	ENST00000542467		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
5CDS-3UTR	ENST00000409314	ENST00000442692		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000409418	ENST00000294309		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000409418	ENST00000542467		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
5CDS-3UTR	ENST00000409418	ENST00000442692		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000458644	ENST00000294309		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
In-frame	ENST00000458644	ENST00000542467		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
5CDS-3UTR	ENST00000458644	ENST00000442692		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
Frame-shit	ENST00000409853	ENST00000294309		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
Frame-shit	ENST00000409853	ENST00000542467		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
5CDS-3UTR	ENST00000409853	ENST00000442692		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
intron-3CDS	ENST00000409263	ENST00000294309		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
intron-3CDS	ENST00000409263	ENST00000542467		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
intron-3UTR	ENST00000409263	ENST00000442692		TCGA	RV	SKCM	TCGA-ER-A19W-06A	FCHSD2	chr11	72613588	-	TPCN2	chr11	68825046	+
5UTR-3CDS	ENST00000361999	ENST00000513610		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000361999	ENST00000507288		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000361999	ENST00000274203		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000361999	ENST00000515803		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000361999	ENST00000427430		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000361999	ENST00000505695		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000361999	ENST00000512061		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000355123	ENST00000513610		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000355123	ENST00000507288		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000355123	ENST00000274203		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000355123	ENST00000515803		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000355123	ENST00000427430		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000355123	ENST00000505695		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000355123	ENST00000512061		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000406921	ENST00000513610		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000406921	ENST00000507288		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000406921	ENST00000274203		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000406921	ENST00000515803		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000406921	ENST00000427430		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000406921	ENST00000505695		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000406921	ENST00000512061		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000407704	ENST00000513610		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-3CDS	ENST00000407704	ENST00000507288		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000407704	ENST00000274203		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000407704	ENST00000515803		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000407704	ENST00000427430		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000407704	ENST00000505695		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5UTR-intron	ENST00000407704	ENST00000512061		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	ITSN2	chr2	24583173	-	MYO10	chr5	16818276	-
5CDS-5UTR	ENST00000446906	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000446906	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000446906	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000446906	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377072	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377072	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377072	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377072	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000307729	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000307729	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000307729	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000307729	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377059	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377059	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377059	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377059	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
3UTR-5UTR	ENST00000495130	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
3UTR-5UTR	ENST00000495130	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
3UTR-5UTR	ENST00000495130	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
3UTR-5UTR	ENST00000495130	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377100	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377100	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377100	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377100	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377091	ENST00000369626		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377091	ENST00000538576		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377091	ENST00000433570		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
5CDS-5UTR	ENST00000377091	ENST00000478835		TCGA	RV	SKCM	TCGA-RP-A695-06A	MLLT10	chr10	21823733	+	SLC16A1	chr1	113471974	-
3UTR-3CDS	ENST00000274747	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
3UTR-3CDS	ENST00000274747	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
3UTR-3CDS	ENST00000274747	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000543597	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000543597	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000543597	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000535061	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000535061	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000535061	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
intron-3CDS	ENST00000483634	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
intron-3CDS	ENST00000483634	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
intron-3CDS	ENST00000483634	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000378353	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000378353	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000378353	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000378386	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000378386	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000378386	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000443868	ENST00000378119		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000443868	ENST00000540769		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000443868	ENST00000378102		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	MRS2	chr6	24423278	+	C6orf62	chr6	24709139	-
In-frame	ENST00000396504	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
In-frame	ENST00000396504	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000396504	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000396504	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000396504	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000396504	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
In-frame	ENST00000355209	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
In-frame	ENST00000355209	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000355209	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000355209	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000355209	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000355209	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
In-frame	ENST00000337566	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
In-frame	ENST00000337566	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000337566	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000337566	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000337566	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000337566	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000407461	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000407461	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000407461	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000407461	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000407461	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000407461	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000420561	ENST00000304623		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000420561	ENST00000359640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000420561	ENST00000511377		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000420561	ENST00000458100		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000420561	ENST00000503622		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000420561	ENST00000495388		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	POLR3H	chr22	41936703	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000300086	ENST00000535705		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000457188		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000336328		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000529506		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000528324		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000332695		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000531885		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000533666		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000533953		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000379500		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
5CDS-intron	ENST00000300086	ENST00000328020		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CMTM1	chr16	66611007	+
intron-intron	ENST00000544301	ENST00000438045		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000544301	ENST00000248633		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000544301	ENST00000428214		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000544301	ENST00000541751		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000224237	ENST00000438045		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000224237	ENST00000248633		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000224237	ENST00000428214		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
5CDS-intron	ENST00000224237	ENST00000541751		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000485947	ENST00000438045		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000485947	ENST00000248633		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000485947	ENST00000428214		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
intron-intron	ENST00000485947	ENST00000541751		TCGA	RV	SKCM	TCGA-D3-A2JO-06A	VIM	chr10	17279592	+	PEX1	chr7	92146729	-
Frame-shit	ENST00000537081	ENST00000261180		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	AVIL	chr12	58201977	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000537081	ENST00000549138		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	AVIL	chr12	58201977	-	TRHDE	chr12	72680461	+
Frame-shit	ENST00000257861	ENST00000261180		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	AVIL	chr12	58201977	-	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000257861	ENST00000549138		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	AVIL	chr12	58201977	-	TRHDE	chr12	72680461	+
intron-3CDS	ENST00000550083	ENST00000261180		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	AVIL	chr12	58201977	-	TRHDE	chr12	72680461	+
intron-intron	ENST00000550083	ENST00000549138		TCGA	RV	SKCM	TCGA-ER-A2NE-06A	AVIL	chr12	58201977	-	TRHDE	chr12	72680461	+
3UTR-intron	ENST00000263645	ENST00000452533		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000553257		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000549701		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000358214		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000548671		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000266481		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000547312		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000414834		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
3UTR-intron	ENST00000263645	ENST00000381000		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000452533		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000553257		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000549701		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000358214		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000548671		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000266481		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000547312		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000414834		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000492627	ENST00000381000		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000452533		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000553257		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000549701		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000358214		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000548671		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000266481		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000547312		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000414834		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000381036	ENST00000381000		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000452533		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000553257		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000549701		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000358214		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000548671		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000266481		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000547312		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000414834		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000526072	ENST00000381000		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000452533		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000553257		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000549701		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000358214		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000548671		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000266481		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000547312		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000414834		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000524805	ENST00000381000		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000452533		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000553257		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000549701		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000358214		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000548671		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000266481		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000547312		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000414834		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
intron-intron	ENST00000481687	ENST00000381000		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	CD81	chr11	2418627	+	DNM1L	chr12	32905677	+
Frame-shit	ENST00000296603	ENST00000304623		TCGA	RV	SKCM	TCGA-EE-A20I-06A	LMBRD2	chr5	36108636	-	CTNND2	chr5	11365002	-
Frame-shit	ENST00000296603	ENST00000359640		TCGA	RV	SKCM	TCGA-EE-A20I-06A	LMBRD2	chr5	36108636	-	CTNND2	chr5	11365002	-
Frame-shit	ENST00000296603	ENST00000511377		TCGA	RV	SKCM	TCGA-EE-A20I-06A	LMBRD2	chr5	36108636	-	CTNND2	chr5	11365002	-
5CDS-5UTR	ENST00000296603	ENST00000458100		TCGA	RV	SKCM	TCGA-EE-A20I-06A	LMBRD2	chr5	36108636	-	CTNND2	chr5	11365002	-
5CDS-5UTR	ENST00000296603	ENST00000503622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	LMBRD2	chr5	36108636	-	CTNND2	chr5	11365002	-
5CDS-5UTR	ENST00000296603	ENST00000495388		TCGA	RV	SKCM	TCGA-EE-A20I-06A	LMBRD2	chr5	36108636	-	CTNND2	chr5	11365002	-
In-frame	ENST00000418929	ENST00000541276		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	PRR12	chr19	50105175	+	FDX1L	chr19	10421616	-
Frame-shit	ENST00000418929	ENST00000393708		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	PRR12	chr19	50105175	+	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000418929	ENST00000492239		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	PRR12	chr19	50105175	+	FDX1L	chr19	10421616	-
5CDS-5UTR	ENST00000418929	ENST00000494368		TCGA	RV	SKCM	TCGA-ER-A3ET-06A	PRR12	chr19	50105175	+	FDX1L	chr19	10421616	-
intron-3CDS	ENST00000297313	ENST00000344683		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000297313	ENST00000519480		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000297313	ENST00000522905		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000297313	ENST00000521175		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-3CDS	ENST00000344277	ENST00000344683		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000344277	ENST00000519480		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000344277	ENST00000522905		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000344277	ENST00000521175		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5UTR-3CDS	ENST00000522225	ENST00000344683		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5UTR-intron	ENST00000522225	ENST00000519480		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5UTR-intron	ENST00000522225	ENST00000522905		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5UTR-intron	ENST00000522225	ENST00000521175		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
In-frame	ENST00000276500	ENST00000344683		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5CDS-intron	ENST00000276500	ENST00000519480		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5CDS-intron	ENST00000276500	ENST00000522905		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
5CDS-intron	ENST00000276500	ENST00000521175		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-3CDS	ENST00000517405	ENST00000344683		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000517405	ENST00000519480		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000517405	ENST00000522905		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-intron	ENST00000517405	ENST00000521175		TCGA	RV	SKCM	TCGA-EB-A82B-01A	RGS20	chr8	54793644	+	MCPH1	chr8	6335115	+
intron-3UTR	ENST00000539317	ENST00000474751		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000539317	ENST00000409991		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000539317	ENST00000292199		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000539317	ENST00000409265		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000539317	ENST00000409109		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000539317	ENST00000525863		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-3UTR	ENST00000487871	ENST00000474751		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000487871	ENST00000409991		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000487871	ENST00000292199		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000487871	ENST00000409265		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000487871	ENST00000409109		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
intron-5UTR	ENST00000487871	ENST00000525863		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SMAP2	chr1	40839895	+	NLRX1	chr11	119042065	+
5UTR-3CDS	ENST00000352645	ENST00000406902		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
5UTR-3CDS	ENST00000352645	ENST00000361034		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
5UTR-intron	ENST00000352645	ENST00000490378		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
5UTR-intron	ENST00000352645	ENST00000408031		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
intron-3CDS	ENST00000351589	ENST00000406902		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
intron-3CDS	ENST00000351589	ENST00000361034		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
intron-intron	ENST00000351589	ENST00000490378		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
intron-intron	ENST00000351589	ENST00000408031		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ZC3H7B	chr22	41697776	+	GRAMD4	chr22	47063993	+
5UTR-3CDS	ENST00000261749	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
5UTR-3CDS	ENST00000261749	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000561060	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000561060	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000559157	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000559157	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000558494	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000558494	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000559835	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000559835	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
5UTR-3CDS	ENST00000559775	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
5UTR-3CDS	ENST00000559775	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000558688	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000558688	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000558087	ENST00000360473		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
intron-3CDS	ENST00000558087	ENST00000312942		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	KCNRG	chr13	50594350	+
In-frame	ENST00000376236	ENST00000376980		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
In-frame	ENST00000376236	ENST00000376946		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
5CDS-intron	ENST00000376236	ENST00000483085		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
intron-3CDS	ENST00000356785	ENST00000376980		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
intron-3CDS	ENST00000356785	ENST00000376946		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
intron-intron	ENST00000356785	ENST00000483085		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
intron-3CDS	ENST00000493857	ENST00000376980		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
intron-3CDS	ENST00000493857	ENST00000376946		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
intron-intron	ENST00000493857	ENST00000483085		TCGA	RV	SKCM	TCGA-ER-A196-01A	APBB1IP	chr10	26830621	+	DNAJC1	chr10	22218070	-
5UTR-3CDS	ENST00000522684	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000522684	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000522684	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000522684	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000535192	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000535192	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000535192	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000535192	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519465	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519465	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519465	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519465	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517887	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517887	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517887	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000517887	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000521059	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000521059	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000521059	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000521059	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000395218	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000395218	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000395218	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000395218	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000538769	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000538769	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000538769	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000538769	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000340930	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000340930	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000340930	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000340930	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519419	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519419	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519419	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519419	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000430260	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000430260	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000430260	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000430260	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519881	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519881	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519881	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519881	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000520892	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000520892	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-3CDS	ENST00000520892	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5UTR-5UTR	ENST00000520892	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519635	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519635	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000519635	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000519635	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517712	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517712	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000517712	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000517712	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000522950	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000522950	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000522950	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000522950	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520151	ENST00000389327		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520151	ENST00000389328		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-3CDS	ENST00000520151	ENST00000438773		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
intron-5UTR	ENST00000520151	ENST00000522504		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	PTK2	chr8	141935760	-	TRAPPC9	chr8	140744445	-
5CDS-intron	ENST00000549920	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000549920	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000549920	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000550645	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000550645	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000550645	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000552588	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000552588	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000552588	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
intron-intron	ENST00000549273	ENST00000354817		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
intron-intron	ENST00000549273	ENST00000527202		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
intron-intron	ENST00000549273	ENST00000532502		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	RPL18	chr19	49118590	-	FAR1	chr11	13744912	+
5UTR-3CDS	ENST00000483485	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
5UTR-3CDS	ENST00000483485	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
5UTR-3CDS	ENST00000483485	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
5UTR-intron	ENST00000483485	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
In-frame	ENST00000377759	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
In-frame	ENST00000377759	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
In-frame	ENST00000377759	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
5CDS-intron	ENST00000377759	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
Frame-shit	ENST00000377768	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
Frame-shit	ENST00000377768	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
Frame-shit	ENST00000377768	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
5CDS-intron	ENST00000377768	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000606557	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000606557	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000606557	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-intron	ENST00000606557	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000606602	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000606602	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000606602	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-intron	ENST00000606602	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000481323	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000481323	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000481323	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-intron	ENST00000481323	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000486039	ENST00000377899		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000486039	ENST00000262545		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-3CDS	ENST00000486039	ENST00000536609		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
intron-intron	ENST00000486039	ENST00000459871		TCGA	RV	SKCM	TCGA-ER-A19L-06A	SNX5	chr20	17933231	-	PCSK2	chr20	17338972	+
Frame-shit	ENST00000269576	ENST00000468888		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000269576	ENST00000399362		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000269576	ENST00000539981		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000269576	ENST00000359576		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000269576	ENST00000307312		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000269576	ENST00000480013		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
Frame-shit	ENST00000269576	ENST00000461133		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000269576	ENST00000313350		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000269576	ENST00000487200		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000269576	ENST00000333778		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
5CDS-intron	ENST00000269576	ENST00000482896		TCGA	RV	SKCM	TCGA-EB-A24C-01A	KRT10	chr17	38974369	-	CLASP2	chr3	33602368	-
In-frame	ENST00000340941	ENST00000264663		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000340941	ENST00000344920		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000340941	ENST00000512996		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000509358	ENST00000264663		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000509358	ENST00000344920		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000509358	ENST00000512996		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000323375	ENST00000264663		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000323375	ENST00000344920		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
In-frame	ENST00000323375	ENST00000512996		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
3UTR-3CDS	ENST00000510895	ENST00000264663		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
3UTR-3CDS	ENST00000510895	ENST00000344920		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
3UTR-3CDS	ENST00000510895	ENST00000512996		TCGA	RV	SKCM	TCGA-D3-A51N-06A	MCCC2	chr5	70900295	+	NNT	chr5	43675613	+
Frame-shit	ENST00000367142	ENST00000367139		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
Frame-shit	ENST00000367142	ENST00000235932		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
5CDS-5UTR	ENST00000367142	ENST00000437324		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
5CDS-5UTR	ENST00000367142	ENST00000446390		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
5CDS-intron	ENST00000367142	ENST00000468887		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
5CDS-intron	ENST00000367142	ENST00000414729		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
intron-3CDS	ENST00000464938	ENST00000367139		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
intron-3CDS	ENST00000464938	ENST00000235932		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
intron-5UTR	ENST00000464938	ENST00000437324		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
intron-5UTR	ENST00000464938	ENST00000446390		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
intron-intron	ENST00000464938	ENST00000468887		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
intron-intron	ENST00000464938	ENST00000414729		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	NUCKS1	chr1	205719085	-	RAB7L1	chr1	205740781	-
5CDS-5UTR	ENST00000506866	ENST00000338566		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000506866	ENST00000515560		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-intron	ENST00000506866	ENST00000506953		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000274031	ENST00000338566		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000274031	ENST00000515560		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-intron	ENST00000274031	ENST00000506953		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000404104	ENST00000338566		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000404104	ENST00000515560		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-intron	ENST00000404104	ENST00000506953		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000406354	ENST00000338566		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-5UTR	ENST00000406354	ENST00000515560		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5CDS-intron	ENST00000406354	ENST00000506953		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
intron-5UTR	ENST00000608958	ENST00000338566		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
intron-5UTR	ENST00000608958	ENST00000515560		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
intron-intron	ENST00000608958	ENST00000506953		TCGA	RV	SKCM	TCGA-W3-A825-06A	SETD7	chr4	140468074	-	NPY5R	chr4	164266866	+
5UTR-intron	ENST00000401903	ENST00000403050		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
5UTR-intron	ENST00000401903	ENST00000445996		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
5UTR-3UTR	ENST00000401903	ENST00000469407		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
5UTR-intron	ENST00000316495	ENST00000403050		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
5UTR-intron	ENST00000316495	ENST00000445996		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
5UTR-3UTR	ENST00000316495	ENST00000469407		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
intron-intron	ENST00000478137	ENST00000403050		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
intron-intron	ENST00000478137	ENST00000445996		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
intron-3UTR	ENST00000478137	ENST00000469407		TCGA	RV	SKCM	TCGA-ER-A3EV-06A	ZFAND2A	chr7	1199600	-	PHF14	chr7	11209043	+
5UTR-3CDS	ENST00000247087	ENST00000263697		TCGA	RV	SKCM	TCGA-EB-A82B-01A	AHDC1	chr1	27929908	-	DNAJC8	chr1	28537148	-
5UTR-5UTR	ENST00000247087	ENST00000489277		TCGA	RV	SKCM	TCGA-EB-A82B-01A	AHDC1	chr1	27929908	-	DNAJC8	chr1	28537148	-
5UTR-3CDS	ENST00000374011	ENST00000263697		TCGA	RV	SKCM	TCGA-EB-A82B-01A	AHDC1	chr1	27929908	-	DNAJC8	chr1	28537148	-
5UTR-5UTR	ENST00000374011	ENST00000489277		TCGA	RV	SKCM	TCGA-EB-A82B-01A	AHDC1	chr1	27929908	-	DNAJC8	chr1	28537148	-
5UTR-3CDS	ENST00000480033	ENST00000263697		TCGA	RV	SKCM	TCGA-EB-A82B-01A	AHDC1	chr1	27929908	-	DNAJC8	chr1	28537148	-
5UTR-5UTR	ENST00000480033	ENST00000489277		TCGA	RV	SKCM	TCGA-EB-A82B-01A	AHDC1	chr1	27929908	-	DNAJC8	chr1	28537148	-
5CDS-3UTR	ENST00000378119	ENST00000274747		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000378119	ENST00000543597		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000378119	ENST00000535061		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378119	ENST00000483634		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378119	ENST00000378353		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378119	ENST00000378386		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378119	ENST00000443868		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000540769	ENST00000274747		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000540769	ENST00000543597		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000540769	ENST00000535061		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000540769	ENST00000483634		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000540769	ENST00000378353		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000540769	ENST00000378386		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000540769	ENST00000443868		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000378102	ENST00000274747		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000378102	ENST00000543597		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-3UTR	ENST00000378102	ENST00000535061		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378102	ENST00000483634		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378102	ENST00000378353		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378102	ENST00000378386		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-intron	ENST00000378102	ENST00000443868		TCGA	RV	SKCM	TCGA-EE-A2GP-06A	C6orf62	chr6	24714546	-	MRS2	chr6	24423812	+
5CDS-5UTR	ENST00000380494	ENST00000508821		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000380494	ENST00000425382		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000380494	ENST00000438340		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000380494	ENST00000505959		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000405807	ENST00000508821		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000405807	ENST00000425382		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000405807	ENST00000438340		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000405807	ENST00000505959		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000261415	ENST00000508821		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000261415	ENST00000425382		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000261415	ENST00000438340		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5CDS-5UTR	ENST00000261415	ENST00000505959		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000508692	ENST00000508821		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000508692	ENST00000425382		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000508692	ENST00000438340		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
intron-5UTR	ENST00000508692	ENST00000505959		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	COL4A3BP	chr5	74801807	-	ELOVL7	chr5	60083258	-
5UTR-3CDS	ENST00000282516	ENST00000231498		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-3CDS	ENST00000282516	ENST00000381843		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-3CDS	ENST00000282516	ENST00000513532		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-5UTR	ENST00000282516	ENST00000502533		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-3CDS	ENST00000448238	ENST00000231498		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-3CDS	ENST00000448238	ENST00000381843		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-3CDS	ENST00000448238	ENST00000513532		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
5UTR-5UTR	ENST00000448238	ENST00000502533		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
intron-3CDS	ENST00000504430	ENST00000231498		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
intron-3CDS	ENST00000504430	ENST00000381843		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
intron-3CDS	ENST00000504430	ENST00000513532		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
intron-5UTR	ENST00000504430	ENST00000502533		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36877280	+	NUP155	chr5	37309369	-
intron-3CDS	ENST00000355117	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000355117	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000355117	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000355117	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000355117	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000355117	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000540841	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000540841	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000540841	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000540841	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000540841	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000540841	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000540178	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000540178	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000540178	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000360409	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000360409	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000360409	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000417189	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000417189	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000417189	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000417189	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000417189	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000417189	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000357118	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000357118	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000357118	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000357118	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000357118	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000357118	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000357785	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-intron	ENST00000357785	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
5CDS-3UTR	ENST00000357785	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000272849	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000272849	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000272849	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000272849	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000272849	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000272849	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000412873	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000412873	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000412873	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000412873	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000412873	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000412873	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3CDS	ENST00000485684	ENST00000406610		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000462231		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000349953		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000358768		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-intron	ENST00000485684	ENST00000351153		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
intron-3UTR	ENST00000485684	ENST00000488622		TCGA	RV	SKCM	TCGA-EE-A20I-06A	NRP2	chr2	206657009	+	PARD3B	chr2	206418048	+
Frame-shit	ENST00000219473	ENST00000262429		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
Frame-shit	ENST00000219473	ENST00000416219		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
5CDS-3UTR	ENST00000219473	ENST00000420010		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
Frame-shit	ENST00000570191	ENST00000262429		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
Frame-shit	ENST00000570191	ENST00000416219		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
5CDS-3UTR	ENST00000570191	ENST00000420010		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
3UTR-3CDS	ENST00000562743	ENST00000262429		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
3UTR-3CDS	ENST00000562743	ENST00000416219		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
3UTR-3UTR	ENST00000562743	ENST00000420010		TCGA	RV	SKCM	TCGA-D3-A1Q1-06A	USP10	chr16	84773975	+	ATP2C2	chr16	84442011	+
Frame-shit	ENST00000374736	ENST00000358151		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000374736	ENST00000355824		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000374736	ENST00000309235		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000374736	ENST00000374374		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
intron-3CDS	ENST00000494467	ENST00000358151		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
intron-intron	ENST00000494467	ENST00000355824		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
intron-intron	ENST00000494467	ENST00000309235		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
intron-intron	ENST00000494467	ENST00000374374		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
Frame-shit	ENST00000423487	ENST00000358151		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000423487	ENST00000355824		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000423487	ENST00000309235		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000423487	ENST00000374374		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
In-frame	ENST00000374733	ENST00000358151		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000374733	ENST00000355824		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000374733	ENST00000309235		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
5CDS-intron	ENST00000374733	ENST00000374374		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	ABCA1	chr9	107645320	-	ZNF483	chr9	114338645	+
Frame-shit	ENST00000295688	ENST00000376929		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000295688	ENST00000506690		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000295688	ENST00000389805		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000295688	ENST00000402874		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000295688	ENST00000510187		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000295688	ENST00000360718		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000368259	ENST00000376929		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000368259	ENST00000506690		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000368259	ENST00000389805		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000368259	ENST00000402874		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000368259	ENST00000510187		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
5CDS-intron	ENST00000368259	ENST00000360718		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000368261	ENST00000376929		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368261	ENST00000506690		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368261	ENST00000389805		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368261	ENST00000402874		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368261	ENST00000510187		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368261	ENST00000360718		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000472765	ENST00000376929		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000472765	ENST00000506690		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000472765	ENST00000389805		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000472765	ENST00000402874		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000472765	ENST00000510187		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000472765	ENST00000360718		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-3CDS	ENST00000368256	ENST00000376929		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368256	ENST00000506690		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368256	ENST00000389805		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368256	ENST00000402874		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368256	ENST00000510187		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
intron-intron	ENST00000368256	ENST00000360718		TCGA	RV	SKCM	TCGA-EE-A2MD-06A	CCT3	chr1	156278760	-	SQSTM1	chr5	179250858	+
Frame-shit	ENST00000368985	ENST00000368482		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
Frame-shit	ENST00000368985	ENST00000368480		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
5CDS-3UTR	ENST00000368985	ENST00000479937		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
Frame-shit	ENST00000448301	ENST00000368482		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
Frame-shit	ENST00000448301	ENST00000368480		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
5CDS-3UTR	ENST00000448301	ENST00000479937		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
intron-3CDS	ENST00000480760	ENST00000368482		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
intron-3CDS	ENST00000480760	ENST00000368480		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
intron-3UTR	ENST00000480760	ENST00000479937		TCGA	RV	SKCM	TCGA-EB-A6QY-01A	CTSS	chr1	150720253	-	TDRD10	chr1	154519885	+
Frame-shit	ENST00000366844	ENST00000366510		TCGA	RV	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246907378	+
Frame-shit	ENST00000366843	ENST00000366510		TCGA	RV	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246907378	+
Frame-shit	ENST00000284563	ENST00000366510		TCGA	RV	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246907378	+
intron-3CDS	ENST00000391874	ENST00000366510		TCGA	RV	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246907378	+
Frame-shit	ENST00000334528	ENST00000306730		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000334528	ENST00000558136		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
Frame-shit	ENST00000561249	ENST00000306730		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000561249	ENST00000558136		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
Frame-shit	ENST00000559047	ENST00000306730		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
5CDS-5UTR	ENST00000559047	ENST00000558136		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-3CDS	ENST00000558197	ENST00000306730		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-5UTR	ENST00000558197	ENST00000558136		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-3CDS	ENST00000559150	ENST00000306730		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-5UTR	ENST00000559150	ENST00000558136		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-3CDS	ENST00000320930	ENST00000306730		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-5UTR	ENST00000320930	ENST00000558136		TCGA	RV	SKCM	TCGA-D3-A5GL-06A	FMN1	chr15	33091005	-	AVEN	chr15	34168196	-
intron-intron	ENST00000588750	ENST00000408982		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000588750	ENST00000262477		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000588750	ENST00000537505		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000588750	ENST00000546142		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000588750	ENST00000341923		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000588750	ENST00000570487		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000588802	ENST00000408982		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000588802	ENST00000262477		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000588802	ENST00000537505		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000588802	ENST00000546142		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000588802	ENST00000341923		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000588802	ENST00000570487		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000252491	ENST00000408982		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000252491	ENST00000262477		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000252491	ENST00000537505		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000252491	ENST00000546142		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000252491	ENST00000341923		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000252491	ENST00000570487		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000592885	ENST00000408982		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000592885	ENST00000262477		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000592885	ENST00000537505		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000592885	ENST00000546142		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000592885	ENST00000341923		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000592885	ENST00000570487		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000589781	ENST00000408982		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000589781	ENST00000262477		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000589781	ENST00000537505		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000589781	ENST00000546142		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000589781	ENST00000341923		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000589781	ENST00000570487		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000586638	ENST00000408982		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000586638	ENST00000262477		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000586638	ENST00000537505		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000586638	ENST00000546142		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000586638	ENST00000341923		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000586638	ENST00000570487		TCGA	RV	SKCM	TCGA-D3-A1QB-06A	APOC1	chr19	45422606	+	RABEP1	chr17	5283828	+
In-frame	ENST00000310325	ENST00000439268		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
In-frame	ENST00000310325	ENST00000340578		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
In-frame	ENST00000310325	ENST00000541471		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
In-frame	ENST00000310325	ENST00000591092		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
In-frame	ENST00000310325	ENST00000034275		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
5CDS-intron	ENST00000310325	ENST00000591124		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
intron-3CDS	ENST00000533168	ENST00000439268		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
intron-3CDS	ENST00000533168	ENST00000340578		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
intron-3CDS	ENST00000533168	ENST00000541471		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
intron-3CDS	ENST00000533168	ENST00000591092		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
intron-3CDS	ENST00000533168	ENST00000034275		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
intron-intron	ENST00000533168	ENST00000591124		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	CTSF	chr11	66335745	-	RANBP3	chr19	5921332	-
5UTR-3CDS	ENST00000397195	ENST00000302538		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-3CDS	ENST00000397195	ENST00000544583		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-intron	ENST00000397195	ENST00000572441		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-intron	ENST00000397195	ENST00000574437		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-intron	ENST00000397195	ENST00000291107		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-intron	ENST00000397195	ENST00000543210		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-intron	ENST00000397195	ENST00000536794		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-intron	ENST00000397195	ENST00000573895		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-3CDS	ENST00000572915	ENST00000302538		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-3CDS	ENST00000572915	ENST00000544583		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-intron	ENST00000572915	ENST00000572441		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-intron	ENST00000572915	ENST00000574437		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-intron	ENST00000572915	ENST00000291107		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-intron	ENST00000572915	ENST00000543210		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-intron	ENST00000572915	ENST00000536794		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
3UTR-intron	ENST00000572915	ENST00000573895		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-3CDS	ENST00000451360	ENST00000302538		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-3CDS	ENST00000451360	ENST00000544583		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-intron	ENST00000451360	ENST00000572441		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-intron	ENST00000451360	ENST00000574437		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-intron	ENST00000451360	ENST00000291107		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-intron	ENST00000451360	ENST00000543210		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-intron	ENST00000451360	ENST00000536794		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
intron-intron	ENST00000451360	ENST00000573895		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	PAFAH1B1	chr17	2497300	+	ABR	chr17	962107	-
5UTR-3CDS	ENST00000359282	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359282	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359282	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359282	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359282	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359282	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359282	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000603815	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000437231	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000447282	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000549863	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000359462	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000546463	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000552296	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000552819	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000455667	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000439930	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000548933	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000403681		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000541363		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000393577		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000393578		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000425208		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000536545		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
intron-3CDS	ENST00000541275	ENST00000354636		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	PCBP2	chr12	53846160	+	HMGA2	chr12	66221781	+
5UTR-3CDS	ENST00000250559	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000250559	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000250559	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000250559	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000250559	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000393436	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000393436	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000393436	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000393436	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000393436	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000341355	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000341355	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000341355	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000341355	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000341355	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000537460	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000537460	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000537460	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000537460	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000537460	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
intron-3CDS	ENST00000463493	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
intron-3CDS	ENST00000463493	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
intron-3CDS	ENST00000463493	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
intron-3CDS	ENST00000463493	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
intron-3CDS	ENST00000463493	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000450214	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000450214	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000450214	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000450214	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000450214	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543393	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543393	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543393	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543393	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543393	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000378985	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000378985	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000378985	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000378985	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000378985	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000540209	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000540209	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000540209	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000540209	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000540209	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000539091	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000539091	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000539091	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000539091	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000539091	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000542145	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000542145	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000542145	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000542145	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000542145	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543697	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543697	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543697	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543697	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000543697	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000541216	ENST00000567134		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000541216	ENST00000308588		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000541216	ENST00000564644		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000541216	ENST00000371091		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
5UTR-3CDS	ENST00000541216	ENST00000564675		TCGA	RV	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75899654	-
In-frame	ENST00000377966	ENST00000532485		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000377966	ENST00000530182		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000377966	ENST00000526597		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000377966	ENST00000533873		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000377966	ENST00000538157		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000377966	ENST00000544113		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
3UTR-3CDS	ENST00000479053	ENST00000532485		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
3UTR-3UTR	ENST00000479053	ENST00000530182		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
3UTR-5UTR	ENST00000479053	ENST00000526597		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
3UTR-5UTR	ENST00000479053	ENST00000533873		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
3UTR-5UTR	ENST00000479053	ENST00000538157		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
3UTR-intron	ENST00000479053	ENST00000544113		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	RECK	chr9	36052320	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000218388	ENST00000233057		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000218388	ENST00000395127		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000218388	ENST00000405334		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000377018	ENST00000233057		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000377018	ENST00000395127		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000377018	ENST00000405334		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000456754	ENST00000233057		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000456754	ENST00000395127		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000456754	ENST00000405334		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000377017	ENST00000233057		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000377017	ENST00000395127		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000377017	ENST00000405334		TCGA	RV	SKCM	TCGA-EE-A2MK-06A	TIMP1	chrX	47446188	+	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000505113	ENST00000359867		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000505113	ENST00000396832		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-5UTR	ENST00000505113	ENST00000400206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000505113	ENST00000403904		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000505113	ENST00000413574		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000505113	ENST00000405675		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000505113	ENST00000498529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000316418	ENST00000359867		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000316418	ENST00000396832		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-5UTR	ENST00000316418	ENST00000400206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000316418	ENST00000403904		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000316418	ENST00000413574		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000316418	ENST00000405675		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
5CDS-intron	ENST00000316418	ENST00000498529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000512529	ENST00000359867		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000512529	ENST00000396832		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-5UTR	ENST00000512529	ENST00000400206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000512529	ENST00000403904		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000512529	ENST00000413574		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000512529	ENST00000405675		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000512529	ENST00000498529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000515206	ENST00000359867		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000515206	ENST00000396832		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-5UTR	ENST00000515206	ENST00000400206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000515206	ENST00000403904		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000515206	ENST00000413574		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000515206	ENST00000405675		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000515206	ENST00000498529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000506456	ENST00000359867		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000506456	ENST00000396832		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-5UTR	ENST00000506456	ENST00000400206		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000506456	ENST00000403904		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000506456	ENST00000413574		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000506456	ENST00000405675		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
intron-intron	ENST00000506456	ENST00000498529		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	AHRR	chr5	376831	+	CSNK1E	chr22	38732711	-
In-frame	ENST00000366542	ENST00000336199		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
In-frame	ENST00000366542	ENST00000366540		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
In-frame	ENST00000366542	ENST00000366539		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
In-frame	ENST00000366542	ENST00000263826		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
5CDS-intron	ENST00000366542	ENST00000492957		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366543	ENST00000336199		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366543	ENST00000366540		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366543	ENST00000366539		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366543	ENST00000263826		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-intron	ENST00000366543	ENST00000492957		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366544	ENST00000336199		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366544	ENST00000366540		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366544	ENST00000366539		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000366544	ENST00000263826		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-intron	ENST00000366544	ENST00000492957		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000468254	ENST00000336199		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000468254	ENST00000366540		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000468254	ENST00000366539		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000468254	ENST00000263826		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-intron	ENST00000468254	ENST00000492957		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000481987	ENST00000336199		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000481987	ENST00000366540		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000481987	ENST00000366539		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000481987	ENST00000263826		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-intron	ENST00000481987	ENST00000492957		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000490813	ENST00000336199		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000490813	ENST00000366540		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000490813	ENST00000366539		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-3CDS	ENST00000490813	ENST00000263826		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
intron-intron	ENST00000490813	ENST00000492957		TCGA	RV	SKCM	TCGA-FS-A1ZD-06A	CEP170	chr1	243349081	-	AKT3	chr1	243736350	-
Frame-shit	ENST00000350796	ENST00000327946		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
5CDS-intron	ENST00000350796	ENST00000536331		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
5CDS-intron	ENST00000350796	ENST00000552278		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
intron-3CDS	ENST00000396741	ENST00000327946		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
intron-intron	ENST00000396741	ENST00000536331		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
intron-intron	ENST00000396741	ENST00000552278		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
intron-3CDS	ENST00000488964	ENST00000327946		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
intron-intron	ENST00000488964	ENST00000536331		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
intron-intron	ENST00000488964	ENST00000552278		TCGA	RV	SKCM	TCGA-EB-A42Z-01A	CYTH3	chr7	6312105	-	GRID1	chr10	87966405	-
In-frame	ENST00000393784	ENST00000405460		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
In-frame	ENST00000393784	ENST00000425867		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
5CDS-intron	ENST00000393784	ENST00000450321		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-3CDS	ENST00000519860	ENST00000405460		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-3CDS	ENST00000519860	ENST00000425867		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-intron	ENST00000519860	ENST00000450321		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-3CDS	ENST00000523291	ENST00000405460		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-3CDS	ENST00000523291	ENST00000425867		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-intron	ENST00000523291	ENST00000450321		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-3CDS	ENST00000326654	ENST00000405460		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-3CDS	ENST00000326654	ENST00000425867		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
intron-intron	ENST00000326654	ENST00000450321		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ERGIC1	chr5	172359539	+	GPR98	chr5	90083888	+
In-frame	ENST00000269391	ENST00000570565		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000269391	ENST00000442502		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000269391	ENST00000340813		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000269391	ENST00000451037		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000269391	ENST00000285273		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
5CDS-intron	ENST00000269391	ENST00000571918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000319945	ENST00000570565		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000319945	ENST00000442502		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000319945	ENST00000340813		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000319945	ENST00000451037		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000319945	ENST00000285273		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
5CDS-intron	ENST00000319945	ENST00000571918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000589912	ENST00000570565		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000589912	ENST00000442502		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000589912	ENST00000340813		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000589912	ENST00000451037		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
intron-3CDS	ENST00000589912	ENST00000285273		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
intron-intron	ENST00000589912	ENST00000571918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000592271	ENST00000570565		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000592271	ENST00000442502		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000592271	ENST00000340813		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000592271	ENST00000451037		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
In-frame	ENST00000592271	ENST00000285273		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
5CDS-intron	ENST00000592271	ENST00000571918		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	RNF157	chr17	74236234	-	CA10	chr17	49711011	-
5CDS-5UTR	ENST00000264951	ENST00000464873		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-5UTR	ENST00000264951	ENST00000322623		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-5UTR	ENST00000264951	ENST00000417360		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-intron	ENST00000264951	ENST00000480616		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-5UTR	ENST00000392981	ENST00000464873		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-5UTR	ENST00000392981	ENST00000322623		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-5UTR	ENST00000392981	ENST00000417360		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-intron	ENST00000392981	ENST00000480616		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000463916	ENST00000464873		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000463916	ENST00000322623		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000463916	ENST00000417360		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-intron	ENST00000463916	ENST00000480616		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000544157	ENST00000464873		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000544157	ENST00000322623		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000544157	ENST00000417360		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-intron	ENST00000544157	ENST00000480616		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000465074	ENST00000464873		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000465074	ENST00000322623		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-5UTR	ENST00000465074	ENST00000417360		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
intron-intron	ENST00000465074	ENST00000480616		TCGA	RV	SKCM	TCGA-ER-A19F-06A	XRN1	chr3	142098924	-	RUVBL1	chr3	127838257	-
5CDS-intron	ENST00000307630	ENST00000323060		TCGA	RV	SKCM	TCGA-D9-A149-06A	YWHAG	chr7	75988039	-	OPA3	chr19	46057169	-
5CDS-intron	ENST00000307630	ENST00000263275		TCGA	RV	SKCM	TCGA-D9-A149-06A	YWHAG	chr7	75988039	-	OPA3	chr19	46057169	-
5CDS-5UTR	ENST00000307630	ENST00000544371		TCGA	RV	SKCM	TCGA-D9-A149-06A	YWHAG	chr7	75988039	-	OPA3	chr19	46057169	-
Frame-shit	ENST00000338432	ENST00000242576		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000338432	ENST00000336865		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377854	ENST00000242576		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377854	ENST00000336865		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000377848	ENST00000242576		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
In-frame	ENST00000377848	ENST00000336865		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000242576		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543080	ENST00000336865		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000242576		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
intron-3CDS	ENST00000543201	ENST00000336865		TCGA	RV	SKCM	TCGA-EB-A44O-01A	ACACB	chr12	109665294	+	UNG	chr12	109547634	+
Frame-shit	ENST00000263245	ENST00000348697		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263245	ENST00000402984		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263245	ENST00000262722		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263245	ENST00000327858		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263245	ENST00000442170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263245	ENST00000340923		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000263245	ENST00000476366		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
Frame-shit	ENST00000429508	ENST00000348697		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000429508	ENST00000402984		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000429508	ENST00000262722		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000429508	ENST00000327858		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000429508	ENST00000442170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000429508	ENST00000340923		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000429508	ENST00000476366		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
Frame-shit	ENST00000437119	ENST00000348697		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000437119	ENST00000402984		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000437119	ENST00000262722		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000437119	ENST00000327858		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000437119	ENST00000442170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000437119	ENST00000340923		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
5CDS-intron	ENST00000437119	ENST00000476366		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ARFGAP3	chr22	43253120	-	FBLN1	chr22	45996187	+
intron-3CDS	ENST00000471014	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000471014	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000471014	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000471014	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-intron	ENST00000471014	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405570	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405570	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405570	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000405570	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-intron	ENST00000405570	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396183	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396183	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396183	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396183	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000396183	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000349496	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000349496	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000349496	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000349496	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000349496	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000453024	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000453024	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000453024	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000453024	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
intron-intron	ENST00000453024	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396185	ENST00000404984		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396185	ENST00000402050		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396185	ENST00000438376		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000396185	ENST00000325979		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000396185	ENST00000497572		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	CTNNB1	chr3	41281934	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000046794	ENST00000512593		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	LCP2	chr5	169701305	-	SLC34A1	chr5	176820695	+
5CDS-intron	ENST00000046794	ENST00000324417		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	LCP2	chr5	169701305	-	SLC34A1	chr5	176820695	+
5CDS-3UTR	ENST00000046794	ENST00000513614		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	LCP2	chr5	169701305	-	SLC34A1	chr5	176820695	+
intron-intron	ENST00000521416	ENST00000512593		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	LCP2	chr5	169701305	-	SLC34A1	chr5	176820695	+
intron-intron	ENST00000521416	ENST00000324417		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	LCP2	chr5	169701305	-	SLC34A1	chr5	176820695	+
intron-3UTR	ENST00000521416	ENST00000513614		TCGA	RV	SKCM	TCGA-EE-A2GJ-06A	LCP2	chr5	169701305	-	SLC34A1	chr5	176820695	+
5CDS-3UTR	ENST00000251849	ENST00000487159		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000251849	ENST00000327628		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000251849	ENST00000449246		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000251849	ENST00000341421		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000251849	ENST00000396175		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000442415	ENST00000487159		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000442415	ENST00000327628		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000442415	ENST00000449246		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000442415	ENST00000341421		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000442415	ENST00000396175		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000534997	ENST00000487159		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000534997	ENST00000327628		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000534997	ENST00000449246		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000534997	ENST00000341421		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000534997	ENST00000396175		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000542177	ENST00000487159		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000542177	ENST00000327628		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000542177	ENST00000449246		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000542177	ENST00000341421		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
5CDS-3UTR	ENST00000542177	ENST00000396175		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	RAF1	chr3	12645635	-	TRAK1	chr3	42236296	+
In-frame	ENST00000265107	ENST00000231420		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	WDR70	chr5	37396672	+	AGXT2	chr5	35014224	-
In-frame	ENST00000504564	ENST00000231420		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	WDR70	chr5	37396672	+	AGXT2	chr5	35014224	-
intron-3CDS	ENST00000510699	ENST00000231420		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	WDR70	chr5	37396672	+	AGXT2	chr5	35014224	-
5CDS-5UTR	ENST00000336898	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000336898	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000336898	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000336898	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000336898	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000376282	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000376282	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000376282	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000376282	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000376282	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000529095	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000529095	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000529095	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000529095	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-intron	ENST00000529095	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000526177	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000526177	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000526177	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000526177	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-intron	ENST00000526177	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000533784	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000533784	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000533784	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000533784	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000533784	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000529721	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000529721	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000529721	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000529721	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000529721	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533805	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533805	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533805	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-5UTR	ENST00000533805	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
intron-intron	ENST00000533805	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000443276	ENST00000533603		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000443276	ENST00000358171		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000443276	ENST00000530284		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000443276	ENST00000524558		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-intron	ENST00000443276	ENST00000525876		TCGA	RV	SKCM	TCGA-GN-A8LL-06A	GDPD5	chr11	75188664	-	SERPINH1	chr11	75277361	+
5CDS-5UTR	ENST00000258526	ENST00000552983		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000258526	ENST00000332896		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000258526	ENST00000552033		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000258526	ENST00000548483		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000258526	ENST00000542893		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000258526	ENST00000541813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-intron	ENST00000258526	ENST00000548330		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000547057	ENST00000552983		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000547057	ENST00000332896		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000547057	ENST00000552033		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000547057	ENST00000548483		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000547057	ENST00000542893		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000547057	ENST00000541813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-intron	ENST00000547057	ENST00000548330		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-5UTR	ENST00000551495	ENST00000552983		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-5UTR	ENST00000551495	ENST00000332896		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-5UTR	ENST00000551495	ENST00000552033		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-5UTR	ENST00000551495	ENST00000548483		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-5UTR	ENST00000551495	ENST00000542893		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-5UTR	ENST00000551495	ENST00000541813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
intron-intron	ENST00000551495	ENST00000548330		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000545312	ENST00000552983		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000545312	ENST00000332896		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000545312	ENST00000552033		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000545312	ENST00000548483		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000545312	ENST00000542893		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-5UTR	ENST00000545312	ENST00000541813		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
5CDS-intron	ENST00000545312	ENST00000548330		TCGA	RV	SKCM	TCGA-WE-A8K1-06A	PLXNC1	chr12	94697827	+	CRADD	chr12	94072545	+
Frame-shit	ENST00000358161	ENST00000373511		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
Frame-shit	ENST00000358161	ENST00000373498		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000350766		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000373503		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000394063		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000265960		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000373497		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000394060		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000358161	ENST00000483937		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
Frame-shit	ENST00000372739	ENST00000373511		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
Frame-shit	ENST00000372739	ENST00000373498		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000350766		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000373503		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000394063		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000265960		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000373497		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000394060		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372739	ENST00000483937		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
Frame-shit	ENST00000372731	ENST00000373511		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
Frame-shit	ENST00000372731	ENST00000373498		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000350766		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000373503		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000394063		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000265960		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000373497		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000394060		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
5CDS-intron	ENST00000372731	ENST00000483937		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-3CDS	ENST00000475367	ENST00000373511		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-3CDS	ENST00000475367	ENST00000373498		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000350766		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000373503		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000394063		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000265960		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000373497		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000394060		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
3UTR-intron	ENST00000475367	ENST00000483937		TCGA	RV	SKCM	TCGA-EB-A24D-01A	SPTAN1	chr9	131356652	+	MAPKAP1	chr9	128268696	-
In-frame	ENST00000278505	ENST00000533486		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ENDOD1	chr11	94823391	+	RAB30	chr11	82705164	-
In-frame	ENST00000278505	ENST00000534141		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ENDOD1	chr11	94823391	+	RAB30	chr11	82705164	-
In-frame	ENST00000278505	ENST00000260056		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ENDOD1	chr11	94823391	+	RAB30	chr11	82705164	-
In-frame	ENST00000278505	ENST00000527633		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ENDOD1	chr11	94823391	+	RAB30	chr11	82705164	-
5CDS-intron	ENST00000278505	ENST00000525117		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ENDOD1	chr11	94823391	+	RAB30	chr11	82705164	-
5CDS-intron	ENST00000278505	ENST00000532548		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ENDOD1	chr11	94823391	+	RAB30	chr11	82705164	-
In-frame	ENST00000221801	ENST00000355481		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RYR1	chr19	39055599	+
In-frame	ENST00000221801	ENST00000360985		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RYR1	chr19	39055599	+
In-frame	ENST00000221801	ENST00000359596		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RYR1	chr19	39055599	+
intron-3CDS	ENST00000593503	ENST00000355481		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RYR1	chr19	39055599	+
intron-3CDS	ENST00000593503	ENST00000360985		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RYR1	chr19	39055599	+
intron-3CDS	ENST00000593503	ENST00000359596		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FBL	chr19	40336931	-	RYR1	chr19	39055599	+
5CDS-5UTR	ENST00000522208	ENST00000377291		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
5CDS-5UTR	ENST00000522208	ENST00000231683		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
5CDS-5UTR	ENST00000521389	ENST00000377291		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
5CDS-5UTR	ENST00000521389	ENST00000231683		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
5CDS-5UTR	ENST00000261947	ENST00000377291		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
5CDS-5UTR	ENST00000261947	ENST00000231683		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
intron-5UTR	ENST00000520564	ENST00000377291		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
intron-5UTR	ENST00000520564	ENST00000231683		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	RNF130	chr5	179467453	-	HRH2	chr5	175109712	+
In-frame	ENST00000335762	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000335762	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000335762	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000335762	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399655	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399655	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399655	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399655	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000480911	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000480911	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000480911	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000480911	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399644	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399644	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399644	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399644	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000344100	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000344100	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000344100	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000344100	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399638	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399638	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399638	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399638	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399629	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399629	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399629	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399629	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399597	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399597	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399597	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399597	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000327702	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000327702	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000327702	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000327702	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399621	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399621	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399621	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399621	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399649	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399649	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399649	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399649	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399637	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399637	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399637	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399637	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000402845	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000402845	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000402845	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000402845	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399591	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399591	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399591	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399591	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399641	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399641	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399641	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399641	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000347598	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000347598	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000347598	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000347598	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399606	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399606	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399606	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399606	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399595	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399595	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399595	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399595	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399601	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399601	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399601	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399601	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399603	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399603	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399603	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399603	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399634	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399634	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399634	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399634	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399617	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000399617	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000399617	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000399617	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000406454	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000406454	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-5UTR	ENST00000406454	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
5CDS-intron	ENST00000406454	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
3UTR-3CDS	ENST00000491104	ENST00000428559		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
3UTR-3CDS	ENST00000491104	ENST00000532964		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
3UTR-5UTR	ENST00000491104	ENST00000526530		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
3UTR-intron	ENST00000491104	ENST00000532573		TCGA	RV	SKCM	TCGA-EE-A2MR-06A	CACNA1C	chr12	2622150	+	DERA	chr12	16109870	+
In-frame	ENST00000380680	ENST00000378654		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	UBL3	chr13	30423649	-	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000380680	ENST00000544100		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	UBL3	chr13	30423649	-	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000380680	ENST00000534875		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	UBL3	chr13	30423649	-	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000380680	ENST00000543413		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	UBL3	chr13	30423649	-	SUCLA2	chr13	48571158	-
5CDS-5UTR	ENST00000380680	ENST00000497202		TCGA	RV	SKCM	TCGA-FS-A1ZJ-06A	UBL3	chr13	30423649	-	SUCLA2	chr13	48571158	-
5UTR-3CDS	ENST00000064778	ENST00000356297		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000064778	ENST00000543296		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000450446	ENST00000356297		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000450446	ENST00000543296		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000356467	ENST00000356297		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
5UTR-3CDS	ENST00000356467	ENST00000543296		TCGA	RV	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	PXDNL	chr8	52339318	-
Frame-shit	ENST00000340149	ENST00000267843		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000340149	ENST00000560270		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000340149	ENST00000560704		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
Frame-shit	ENST00000361507	ENST00000267843		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
5CDS-intron	ENST00000361507	ENST00000560270		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
5CDS-3UTR	ENST00000361507	ENST00000560704		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
intron-3CDS	ENST00000526030	ENST00000267843		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
intron-intron	ENST00000526030	ENST00000560270		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
intron-3UTR	ENST00000526030	ENST00000560704		TCGA	RV	SKCM	TCGA-ER-A19T-06A	GAB2	chr11	77961203	-	FGF7	chr15	49775348	+
intron-3CDS	ENST00000419277	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000419277	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000419277	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000419277	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000419277	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000428995	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000428995	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000428995	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
5CDS-3UTR	ENST00000428995	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
5CDS-intron	ENST00000428995	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000463066	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000463066	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000463066	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000463066	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000463066	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000443117	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000443117	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000443117	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000443117	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000443117	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000551196	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000551196	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000551196	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000551196	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000551196	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000480521	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000480521	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000480521	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000480521	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000480521	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000415247	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000415247	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000415247	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000415247	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000415247	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000484255	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000484255	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000484255	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000484255	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000484255	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000454805	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000454805	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000454805	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000454805	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000454805	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000549300	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000549300	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000549300	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000549300	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000549300	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000475500	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000475500	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000475500	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000475500	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000475500	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000374808	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000374808	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000374808	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000374808	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000374808	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000552158	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000552158	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000552158	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000552158	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000552158	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000488565	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000488565	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000488565	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000488565	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000488565	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000383224	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000383224	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000383224	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000383224	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000383224	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000551933	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000551933	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000551933	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000551933	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000551933	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000474244	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000474244	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000474244	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000474244	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000474244	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000422504	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000422504	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000422504	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000422504	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000422504	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000550806	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000550806	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000550806	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000550806	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000550806	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000494775	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000494775	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000494775	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000494775	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000494775	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000515317	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000515317	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000515317	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000515317	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000515317	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000550456	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000550456	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000550456	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000550456	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000550456	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000502285	ENST00000283943		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000502285	ENST00000389045		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3CDS	ENST00000502285	ENST00000389044		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-3UTR	ENST00000502285	ENST00000543084		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
intron-intron	ENST00000502285	ENST00000409677		TCGA	RV	SKCM	TCGA-ER-A1A1-06A	HLA-DPA1	chr6	33032794	-	TRIP12	chr2	230662547	-
Frame-shit	ENST00000513610	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
intron-3CDS	ENST00000507288	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
intron-3CDS	ENST00000274203	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
intron-3CDS	ENST00000515803	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
intron-3CDS	ENST00000427430	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
intron-3CDS	ENST00000505695	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
intron-3CDS	ENST00000512061	ENST00000264930		TCGA	RV	SKCM	TCGA-FS-A1ZG-06A	MYO10	chr5	16794755	-	SLC12A7	chr5	1094363	-
5CDS-intron	ENST00000266529	ENST00000552491		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000266529	ENST00000547825		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000266529	ENST00000552823		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000266529	ENST00000394943		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000266529	ENST00000341247		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-5UTR	ENST00000266529	ENST00000552783		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000266529	ENST00000552909		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
5CDS-intron	ENST00000266529	ENST00000552008		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000552491		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000547825		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000552823		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000394943		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000341247		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-5UTR	ENST00000552673	ENST00000552783		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000552909		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000552673	ENST00000552008		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000552491		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000547825		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000552823		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000394943		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000341247		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-5UTR	ENST00000551102	ENST00000552783		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000552909		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
intron-intron	ENST00000551102	ENST00000552008		TCGA	RV	SKCM	TCGA-D9-A6E9-06A	ZCRB1	chr12	42717821	-	LIMA1	chr12	50616268	-
Frame-shit	ENST00000534328	ENST00000317204		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000534328	ENST00000527886		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000534328	ENST00000525159		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000534328	ENST00000263646		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
In-frame	ENST00000534328	ENST00000542915		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000534328	ENST00000527938		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
5CDS-intron	ENST00000534328	ENST00000528719		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000332231	ENST00000317204		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000332231	ENST00000527886		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000332231	ENST00000525159		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000332231	ENST00000263646		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
In-frame	ENST00000332231	ENST00000542915		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000332231	ENST00000527938		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
5CDS-intron	ENST00000332231	ENST00000528719		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000448903	ENST00000317204		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000448903	ENST00000527886		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000448903	ENST00000525159		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000448903	ENST00000263646		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
In-frame	ENST00000448903	ENST00000542915		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000448903	ENST00000527938		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
5CDS-intron	ENST00000448903	ENST00000528719		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-3CDS	ENST00000525891	ENST00000317204		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-3CDS	ENST00000525891	ENST00000527886		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-3CDS	ENST00000525891	ENST00000525159		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-3CDS	ENST00000525891	ENST00000263646		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-3CDS	ENST00000525891	ENST00000542915		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-3CDS	ENST00000525891	ENST00000527938		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
intron-intron	ENST00000525891	ENST00000528719		TCGA	RV	SKCM	TCGA-FS-A1ZA-06A	AP2A2	chr11	926088	+	TOLLIP	chr11	1298483	-
Frame-shit	ENST00000301180	ENST00000550746		TCGA	RV	SKCM	TCGA-BF-A1PU-01A	DIP2B	chr12	50899023	+	TBC1D15	chr12	72315148	+
Frame-shit	ENST00000301180	ENST00000319106		TCGA	RV	SKCM	TCGA-BF-A1PU-01A	DIP2B	chr12	50899023	+	TBC1D15	chr12	72315148	+
Frame-shit	ENST00000301180	ENST00000485960		TCGA	RV	SKCM	TCGA-BF-A1PU-01A	DIP2B	chr12	50899023	+	TBC1D15	chr12	72315148	+
Frame-shit	ENST00000301180	ENST00000393309		TCGA	RV	SKCM	TCGA-BF-A1PU-01A	DIP2B	chr12	50899023	+	TBC1D15	chr12	72315148	+
5CDS-intron	ENST00000301180	ENST00000548679		TCGA	RV	SKCM	TCGA-BF-A1PU-01A	DIP2B	chr12	50899023	+	TBC1D15	chr12	72315148	+
In-frame	ENST00000446041	ENST00000458420		TCGA	RV	SKCM	TCGA-EE-A3J7-06A	SLC25A36	chr3	140682069	+	CLSTN2	chr3	139894793	+
3UTR-3CDS	ENST00000393015	ENST00000458420		TCGA	RV	SKCM	TCGA-EE-A3J7-06A	SLC25A36	chr3	140682069	+	CLSTN2	chr3	139894793	+
Frame-shit	ENST00000507429	ENST00000458420		TCGA	RV	SKCM	TCGA-EE-A3J7-06A	SLC25A36	chr3	140682069	+	CLSTN2	chr3	139894793	+
In-frame	ENST00000324194	ENST00000458420		TCGA	RV	SKCM	TCGA-EE-A3J7-06A	SLC25A36	chr3	140682069	+	CLSTN2	chr3	139894793	+
In-frame	ENST00000453248	ENST00000458420		TCGA	RV	SKCM	TCGA-EE-A3J7-06A	SLC25A36	chr3	140682069	+	CLSTN2	chr3	139894793	+
Frame-shit	ENST00000344204	ENST00000504830		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
Frame-shit	ENST00000344204	ENST00000352040		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000344204	ENST00000504582		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000344204	ENST00000515401		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
Frame-shit	ENST00000537187	ENST00000504830		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
Frame-shit	ENST00000537187	ENST00000352040		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000537187	ENST00000504582		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000537187	ENST00000515401		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
Frame-shit	ENST00000509967	ENST00000504830		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
Frame-shit	ENST00000509967	ENST00000352040		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000509967	ENST00000504582		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000509967	ENST00000515401		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-3CDS	ENST00000515710	ENST00000504830		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-3CDS	ENST00000515710	ENST00000352040		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-intron	ENST00000515710	ENST00000504582		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-intron	ENST00000515710	ENST00000515401		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-3CDS	ENST00000344135	ENST00000504830		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-3CDS	ENST00000344135	ENST00000352040		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-intron	ENST00000344135	ENST00000504582		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
intron-intron	ENST00000344135	ENST00000515401		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	TRIO	chr5	14381361	+	ADAMTS12	chr5	33881585	-
5CDS-intron	ENST00000284268	ENST00000426898		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000284268	ENST00000425752		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000284268	ENST00000423947		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000284268	ENST00000435642		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000284268	ENST00000320560		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000284268	ENST00000441606		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000535119	ENST00000426898		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000535119	ENST00000425752		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000535119	ENST00000423947		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000535119	ENST00000435642		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000535119	ENST00000320560		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5CDS-intron	ENST00000535119	ENST00000441606		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5UTR-intron	ENST00000503939	ENST00000426898		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5UTR-intron	ENST00000503939	ENST00000425752		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5UTR-intron	ENST00000503939	ENST00000423947		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5UTR-intron	ENST00000503939	ENST00000435642		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5UTR-intron	ENST00000503939	ENST00000320560		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
5UTR-intron	ENST00000503939	ENST00000441606		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45664245	+
intron-3CDS	ENST00000502509	ENST00000264669		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000502509	ENST00000513658		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
Frame-shit	ENST00000264668	ENST00000264669		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000264668	ENST00000513658		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
intron-3CDS	ENST00000341013	ENST00000264669		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
intron-5UTR	ENST00000341013	ENST00000513658		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
Frame-shit	ENST00000440940	ENST00000264669		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000440940	ENST00000513658		TCGA	RV	SKCM	TCGA-EB-A44R-06A	MTRR	chr5	7897360	+	FASTKD3	chr5	7866096	-
5CDS-5UTR	ENST00000359660	ENST00000515518		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000359660	ENST00000429839		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000359660	ENST00000455884		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000542267	ENST00000515518		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000542267	ENST00000429839		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000542267	ENST00000455884		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000496714	ENST00000515518		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000496714	ENST00000429839		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
5CDS-5UTR	ENST00000496714	ENST00000455884		TCGA	RV	SKCM	TCGA-EB-A82C-01A	FBXL17	chr5	107521818	-	TMEM232	chr5	109941988	-
Frame-shit	ENST00000300086	ENST00000264001		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CKLF	chr16	66599789	+
Frame-shit	ENST00000300086	ENST00000362093		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CKLF	chr16	66599789	+
Frame-shit	ENST00000300086	ENST00000351137		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CKLF	chr16	66599789	+
Frame-shit	ENST00000300086	ENST00000345436		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CKLF	chr16	66599789	+
5CDS-intron	ENST00000300086	ENST00000417030		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CKLF	chr16	66599789	+
5CDS-3UTR	ENST00000300086	ENST00000563092		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	TERF2IP	chr16	75682450	+	CKLF	chr16	66599789	+
Frame-shit	ENST00000313732	ENST00000219473		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
Frame-shit	ENST00000313732	ENST00000570191		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000313732	ENST00000562743		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
Frame-shit	ENST00000564466	ENST00000219473		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
Frame-shit	ENST00000564466	ENST00000570191		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
5CDS-intron	ENST00000564466	ENST00000562743		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
5UTR-3CDS	ENST00000569488	ENST00000219473		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
5UTR-3CDS	ENST00000569488	ENST00000570191		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
5UTR-intron	ENST00000569488	ENST00000562743		TCGA	RV	SKCM	TCGA-EB-A4XL-01A	ZDHHC7	chr16	85011530	-	USP10	chr16	84792322	+
5UTR-5UTR	ENST00000357166	ENST00000307378		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000357166	ENST00000537524		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000357166	ENST00000473830		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000357166	ENST00000452078		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000357166	ENST00000458504		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-intron	ENST00000357166	ENST00000390670		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000371064	ENST00000307378		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000371064	ENST00000537524		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000371064	ENST00000473830		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000371064	ENST00000452078		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-5UTR	ENST00000371064	ENST00000458504		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
5UTR-intron	ENST00000371064	ENST00000390670		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000491039	ENST00000307378		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000491039	ENST00000537524		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000491039	ENST00000473830		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000491039	ENST00000452078		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
intron-5UTR	ENST00000491039	ENST00000458504		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
intron-intron	ENST00000491039	ENST00000390670		TCGA	RV	SKCM	TCGA-GN-A26D-06A	ZDHHC9	chrX	128977235	-	SLCO1A2	chr12	21487643	-
In-frame	ENST00000398868	ENST00000414563		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
In-frame	ENST00000398868	ENST00000359775		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
5CDS-3UTR	ENST00000398868	ENST00000341375		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
Frame-shit	ENST00000332645	ENST00000414563		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
Frame-shit	ENST00000332645	ENST00000359775		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
5CDS-3UTR	ENST00000332645	ENST00000341375		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
intron-3CDS	ENST00000538786	ENST00000414563		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
intron-3CDS	ENST00000538786	ENST00000359775		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
intron-3UTR	ENST00000538786	ENST00000341375		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
5UTR-3CDS	ENST00000535789	ENST00000414563		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
5UTR-3CDS	ENST00000535789	ENST00000359775		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
5UTR-3UTR	ENST00000535789	ENST00000341375		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	ATL3	chr11	63438762	-	ZDHHC14	chr6	158068291	+
Frame-shit	ENST00000301180	ENST00000261192		TCGA	RV	SKCM	TCGA-ER-A193-06A	DIP2B	chr12	50899023	+	BCAT1	chr12	24982831	-
Frame-shit	ENST00000301180	ENST00000538118		TCGA	RV	SKCM	TCGA-ER-A193-06A	DIP2B	chr12	50899023	+	BCAT1	chr12	24982831	-
Frame-shit	ENST00000301180	ENST00000342945		TCGA	RV	SKCM	TCGA-ER-A193-06A	DIP2B	chr12	50899023	+	BCAT1	chr12	24982831	-
Frame-shit	ENST00000301180	ENST00000539282		TCGA	RV	SKCM	TCGA-ER-A193-06A	DIP2B	chr12	50899023	+	BCAT1	chr12	24982831	-
Frame-shit	ENST00000301180	ENST00000539780		TCGA	RV	SKCM	TCGA-ER-A193-06A	DIP2B	chr12	50899023	+	BCAT1	chr12	24982831	-
5CDS-intron	ENST00000301180	ENST00000544418		TCGA	RV	SKCM	TCGA-ER-A193-06A	DIP2B	chr12	50899023	+	BCAT1	chr12	24982831	-
5CDS-intron	ENST00000401722	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000401722	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000228318	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000228318	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000188376	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000188376	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000551917	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000551917	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000552981	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000552981	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000551265	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000551265	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000547534	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000547534	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000549338	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000549338	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000548847	ENST00000484427		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
intron-intron	ENST00000548847	ENST00000371764		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	SLC25A3	chr12	98995485	+	DDX27	chr20	47849303	+
In-frame	ENST00000337137	ENST00000361204		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000337137	ENST00000491541		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
In-frame	ENST00000380995	ENST00000361204		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000380995	ENST00000491541		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
In-frame	ENST00000407381	ENST00000361204		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000407381	ENST00000491541		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
In-frame	ENST00000355704	ENST00000361204		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000355704	ENST00000491541		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
intron-3CDS	ENST00000472791	ENST00000361204		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
intron-intron	ENST00000472791	ENST00000491541		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
In-frame	ENST00000406733	ENST00000361204		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000406733	ENST00000491541		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47308084	+	SREBF2	chr22	42262835	+
Frame-shit	ENST00000394456	ENST00000218758		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
In-frame	ENST00000394456	ENST00000412435		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
Frame-shit	ENST00000394456	ENST00000592828		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
In-frame	ENST00000394456	ENST00000433365		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
5CDS-intron	ENST00000394456	ENST00000590420		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
Frame-shit	ENST00000429701	ENST00000218758		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
In-frame	ENST00000429701	ENST00000412435		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
Frame-shit	ENST00000429701	ENST00000592828		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
In-frame	ENST00000429701	ENST00000433365		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
5CDS-intron	ENST00000429701	ENST00000590420		TCGA	RV	SKCM	TCGA-EB-A550-01A	GTF2F1	chr19	6383322	-	ACP5	chr19	11686067	-
intron-intron	ENST00000389794	ENST00000377892		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000377890		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000377891		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000377889		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000535296		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000338663		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000538682		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389794	ENST00000536981		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000377892		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000377890		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000377891		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000377889		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000535296		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000338663		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000538682		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000389793	ENST00000536981		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000377892		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000377890		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000377891		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000377889		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000535296		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000338663		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000538682		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
5UTR-intron	ENST00000536965	ENST00000536981		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000377892		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000377890		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000377891		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000377889		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000535296		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000338663		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000538682		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
intron-intron	ENST00000473037	ENST00000536981		TCGA	RV	SKCM	TCGA-D3-A1Q3-06A	LYST	chr1	236046487	-	SLC3A2	chr11	62643221	+
In-frame	ENST00000267460	ENST00000315266		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	PELI2	chr14	56645182	+	GPHN	chr14	67490350	+
In-frame	ENST00000267460	ENST00000478722		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	PELI2	chr14	56645182	+	GPHN	chr14	67490350	+
In-frame	ENST00000267460	ENST00000459628		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	PELI2	chr14	56645182	+	GPHN	chr14	67490350	+
In-frame	ENST00000267460	ENST00000543237		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	PELI2	chr14	56645182	+	GPHN	chr14	67490350	+
In-frame	ENST00000267460	ENST00000305960		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	PELI2	chr14	56645182	+	GPHN	chr14	67490350	+
5CDS-3UTR	ENST00000267460	ENST00000544752		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	PELI2	chr14	56645182	+	GPHN	chr14	67490350	+
In-frame	ENST00000377892	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377892	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377892	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377892	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377892	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377892	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377892	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377890	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377890	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377890	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377890	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377890	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377890	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377890	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377891	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377891	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377891	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377891	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377891	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377891	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377891	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377889	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377889	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000377889	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377889	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377889	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377889	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000377889	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000535296	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000535296	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000535296	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000535296	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000535296	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000535296	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000535296	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000338663	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000338663	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000338663	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000338663	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000338663	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000338663	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000338663	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-3CDS	ENST00000538682	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-3CDS	ENST00000538682	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-3CDS	ENST00000538682	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-intron	ENST00000538682	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-intron	ENST00000538682	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-intron	ENST00000538682	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
3UTR-intron	ENST00000538682	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000536981	ENST00000543252		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000536981	ENST00000344138		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000536981	ENST00000540310		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000536981	ENST00000478445		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000536981	ENST00000544756		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000536981	ENST00000399090		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
5CDS-intron	ENST00000536981	ENST00000407075		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	SLC3A2	chr11	62653080	+	GRAP2	chr22	40365415	+
In-frame	ENST00000292211	ENST00000409709		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
In-frame	ENST00000292211	ENST00000409893		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
In-frame	ENST00000292211	ENST00000458637		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
In-frame	ENST00000292211	ENST00000409619		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5CDS-intron	ENST00000292211	ENST00000605744		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5UTR-3CDS	ENST00000497453	ENST00000409709		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5UTR-3CDS	ENST00000497453	ENST00000409893		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5UTR-3CDS	ENST00000497453	ENST00000458637		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5UTR-3CDS	ENST00000497453	ENST00000409619		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5UTR-intron	ENST00000497453	ENST00000605744		TCGA	RV	SKCM	TCGA-EE-A180-06A	UBE2Q1	chr1	154527211	-	MYO7A	chr11	76885802	+
5UTR-3CDS	ENST00000321117	ENST00000496972		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000405222		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000407661		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000406818		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000407038		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000404103		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000407186		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000288642		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-3CDS	ENST00000321117	ENST00000545439		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
5UTR-intron	ENST00000321117	ENST00000472690		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000496972		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000405222		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000407661		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000406818		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000407038		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000404103		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000407186		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000288642		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000264709	ENST00000545439		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-intron	ENST00000264709	ENST00000472690		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000496972		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000405222		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000407661		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000406818		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000407038		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000404103		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000407186		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000288642		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000406659	ENST00000545439		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-intron	ENST00000406659	ENST00000472690		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000496972		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000405222		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000407661		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000406818		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000407038		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000404103		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000407186		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000288642		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000380746	ENST00000545439		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-intron	ENST00000380746	ENST00000472690		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000496972		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000405222		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000407661		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000406818		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000407038		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000404103		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000407186		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000288642		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000402667	ENST00000545439		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-intron	ENST00000402667	ENST00000472690		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000496972		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000405222		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000407661		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000406818		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000407038		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000404103		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000407186		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000288642		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-3CDS	ENST00000474887	ENST00000545439		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
intron-intron	ENST00000474887	ENST00000472690		TCGA	RV	SKCM	TCGA-D3-A3C7-06A	DNMT3A	chr2	25564695	-	DTNB	chr2	25602192	-
In-frame	ENST00000262077	ENST00000300057		TCGA	RV	SKCM	TCGA-YD-A89C-06A	NUP153	chr6	17706508	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000262077	ENST00000559894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	NUP153	chr6	17706508	-	MESP1	chr15	90293458	-
In-frame	ENST00000537253	ENST00000300057		TCGA	RV	SKCM	TCGA-YD-A89C-06A	NUP153	chr6	17706508	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000537253	ENST00000559894		TCGA	RV	SKCM	TCGA-YD-A89C-06A	NUP153	chr6	17706508	-	MESP1	chr15	90293458	-
3UTR-intron	ENST00000491306	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
3UTR-intron	ENST00000491306	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000600880	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000600880	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000446558	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000446558	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000456586	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
5CDS-intron	ENST00000456586	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000598925	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000598925	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000427280	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000427280	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000441179	ENST00000484427		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
intron-intron	ENST00000441179	ENST00000371764		TCGA	RV	SKCM	TCGA-GN-A262-06A	RPL37A	chr2	217366186	+	DDX27	chr20	47849303	+
In-frame	ENST00000566621	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000566621	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000566621	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000566621	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
In-frame	ENST00000437989	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000437989	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000437989	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000437989	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
In-frame	ENST00000569302	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000569302	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000569302	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000569302	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
In-frame	ENST00000567389	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000567389	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000567389	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000567389	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
In-frame	ENST00000562877	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000562877	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000562877	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000562877	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
In-frame	ENST00000338183	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000338183	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000338183	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000338183	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
3UTR-3CDS	ENST00000565792	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
3UTR-5UTR	ENST00000565792	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
3UTR-5UTR	ENST00000565792	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
3UTR-intron	ENST00000565792	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
In-frame	ENST00000562489	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000562489	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-5UTR	ENST00000562489	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
5CDS-intron	ENST00000562489	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
intron-3CDS	ENST00000563167	ENST00000249071		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
intron-5UTR	ENST00000563167	ENST00000406508		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
intron-5UTR	ENST00000563167	ENST00000405484		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
intron-intron	ENST00000563167	ENST00000401529		TCGA	RV	SKCM	TCGA-ER-A19C-06A	C15orf41	chr15	37002162	+	RAC2	chr22	37628958	-
intron-3CDS	ENST00000419748	ENST00000441750		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15564592	-
intron-3CDS	ENST00000419748	ENST00000281513		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15564592	-
Frame-shit	ENST00000303236	ENST00000441750		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15564592	-
Frame-shit	ENST00000303236	ENST00000281513		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15564592	-
intron-3CDS	ENST00000470706	ENST00000441750		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15564592	-
intron-3CDS	ENST00000470706	ENST00000281513		TCGA	RV	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15564592	-
In-frame	ENST00000398141	ENST00000458578		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000398141	ENST00000342192		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5CDS-intron	ENST00000398141	ENST00000545681		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
Frame-shit	ENST00000398145	ENST00000458578		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
Frame-shit	ENST00000398145	ENST00000342192		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5CDS-intron	ENST00000398145	ENST00000545681		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000402105	ENST00000458578		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000402105	ENST00000342192		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5CDS-intron	ENST00000402105	ENST00000545681		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000336873	ENST00000458578		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
In-frame	ENST00000336873	ENST00000342192		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5CDS-intron	ENST00000336873	ENST00000545681		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000493455	ENST00000458578		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000493455	ENST00000342192		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000493455	ENST00000545681		TCGA	RV	SKCM	TCGA-XV-A9W2-01A	HPS4	chr22	26859883	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000524419	ENST00000299413		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000524419	ENST00000532066		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
intron-3CDS	ENST00000528989	ENST00000299413		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000528989	ENST00000532066		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
Frame-shit	ENST00000315571	ENST00000299413		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
5CDS-3UTR	ENST00000315571	ENST00000532066		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
intron-3CDS	ENST00000529759	ENST00000299413		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
intron-3UTR	ENST00000529759	ENST00000532066		TCGA	RV	SKCM	TCGA-FR-A726-01A	LDLRAD3	chr11	36057799	+	TRIM44	chr11	35827908	+
5CDS-5UTR	ENST00000378017	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000378017	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000378017	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000378017	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-intron	ENST00000378017	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000518547	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000518547	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000518547	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000518547	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-intron	ENST00000518547	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5UTR-5UTR	ENST00000354184	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5UTR-5UTR	ENST00000354184	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5UTR-5UTR	ENST00000354184	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5UTR-5UTR	ENST00000354184	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5UTR-intron	ENST00000354184	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000395508	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000395508	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000395508	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000395508	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-intron	ENST00000395508	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000325064	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000325064	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000325064	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-5UTR	ENST00000325064	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
5CDS-intron	ENST00000325064	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000431961	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000431961	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000431961	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000431961	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-intron	ENST00000431961	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000523587	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000523587	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000523587	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000523587	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-intron	ENST00000523587	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000524090	ENST00000317025		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000524090	ENST00000433384		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000524090	ENST00000527502		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-5UTR	ENST00000524090	ENST00000316985		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
intron-intron	ENST00000524090	ENST00000525081		TCGA	RV	SKCM	TCGA-GF-A769-01A	MTSS1	chr8	125711767	-	WHSC1L1	chr8	38205733	-
3UTR-3CDS	ENST00000487159	ENST00000251849		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000487159	ENST00000442415		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000487159	ENST00000534997		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000487159	ENST00000542177		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000327628	ENST00000251849		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000327628	ENST00000442415		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000327628	ENST00000534997		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000327628	ENST00000542177		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000449246	ENST00000251849		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000449246	ENST00000442415		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000449246	ENST00000534997		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000449246	ENST00000542177		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000341421	ENST00000251849		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000341421	ENST00000442415		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000341421	ENST00000534997		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000341421	ENST00000542177		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000396175	ENST00000251849		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000396175	ENST00000442415		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000396175	ENST00000534997		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
In-frame	ENST00000396175	ENST00000542177		TCGA	RV	SKCM	TCGA-EE-A2MI-06A	TRAK1	chr3	42235390	+	RAF1	chr3	12641914	-
5CDS-intron	ENST00000311921	ENST00000399782		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000311921	ENST00000317582		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000311921	ENST00000543133		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000311921	ENST00000538149		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000311921	ENST00000337612		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000311921	ENST00000493680		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000311921	ENST00000355028		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000311921	ENST00000418951		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000311921	ENST00000485631		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000399782		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000317582		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000543133		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000538149		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000337612		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000493680		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000544431	ENST00000355028		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000544431	ENST00000418951		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000544431	ENST00000485631		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000399782		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000317582		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000543133		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000538149		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000337612		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000493680		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-intron	ENST00000355898	ENST00000355028		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000355898	ENST00000418951		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
5CDS-3UTR	ENST00000355898	ENST00000485631		TCGA	RV	SKCM	TCGA-FS-A1YY-06A	ZNF507	chr19	32851524	+	BCL2L13	chr22	18209443	+
Frame-shit	ENST00000359867	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
5CDS-5UTR	ENST00000359867	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
Frame-shit	ENST00000396832	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
5CDS-5UTR	ENST00000396832	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
Frame-shit	ENST00000400206	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
5CDS-5UTR	ENST00000400206	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
Frame-shit	ENST00000403904	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
5CDS-5UTR	ENST00000403904	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
Frame-shit	ENST00000413574	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
5CDS-5UTR	ENST00000413574	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
Frame-shit	ENST00000405675	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
5CDS-5UTR	ENST00000405675	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
intron-3CDS	ENST00000498529	ENST00000216252		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
intron-5UTR	ENST00000498529	ENST00000491254		TCGA	RV	SKCM	TCGA-EE-A2ME-06A	CSNK1E	chr22	38710087	-	PHF5A	chr22	41864151	-
Frame-shit	ENST00000263056	ENST00000375318		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	MAP3K8	chr10	30748430	+	LYZL2	chr10	30900953	-
Frame-shit	ENST00000542547	ENST00000375318		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	MAP3K8	chr10	30748430	+	LYZL2	chr10	30900953	-
intron-3CDS	ENST00000375322	ENST00000375318		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	MAP3K8	chr10	30748430	+	LYZL2	chr10	30900953	-
Frame-shit	ENST00000375321	ENST00000375318		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	MAP3K8	chr10	30748430	+	LYZL2	chr10	30900953	-
In-frame	ENST00000359019	ENST00000378695		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
In-frame	ENST00000359019	ENST00000312442		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000359019	ENST00000548623		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
Frame-shit	ENST00000334822	ENST00000378695		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
Frame-shit	ENST00000334822	ENST00000312442		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000334822	ENST00000548623		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
Frame-shit	ENST00000426126	ENST00000378695		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
Frame-shit	ENST00000426126	ENST00000312442		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
5CDS-intron	ENST00000426126	ENST00000548623		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
intron-3CDS	ENST00000550789	ENST00000378695		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
intron-3CDS	ENST00000550789	ENST00000312442		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
intron-intron	ENST00000550789	ENST00000548623		TCGA	RV	SKCM	TCGA-EE-A2MS-06A	ZDHHC17	chr12	77158109	+	GLIPR1L1	chr12	75756882	+
5UTR-intron	ENST00000376511	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
5UTR-5UTR	ENST00000376511	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
5UTR-intron	ENST00000376511	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
5UTR-intron	ENST00000484449	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
5UTR-5UTR	ENST00000484449	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
5UTR-intron	ENST00000484449	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000420949	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000420949	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000420949	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000549281	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000549281	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000549281	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000468706	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000468706	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000468706	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000449113	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000449113	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000449113	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000547333	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000547333	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000547333	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000475926	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000475926	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000475926	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000426299	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000426299	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000426299	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000551493	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000551493	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000551493	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000494003	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000494003	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000494003	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000383586	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000383586	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000383586	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000548899	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000548899	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000548899	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000478528	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000478528	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000478528	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000424446	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000424446	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000424446	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000552146	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000552146	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000552146	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000488513	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000488513	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000488513	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000429597	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000429597	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000429597	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000549865	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000549865	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000549865	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000482076	ENST00000533035		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-5UTR	ENST00000482076	ENST00000308110		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
intron-intron	ENST00000482076	ENST00000525006		TCGA	RV	SKCM	TCGA-W3-A825-06A	PPP1R10	chr6	30584255	-	MUS81	chr11	65628146	+
5CDS-intron	ENST00000394936	ENST00000313164		TCGA	RV	SKCM	TCGA-FR-A8YE-06A	PSAP	chr10	73576058	-	C7	chr5	40954982	+
5CDS-intron	ENST00000394936	ENST00000494960		TCGA	RV	SKCM	TCGA-FR-A8YE-06A	PSAP	chr10	73576058	-	C7	chr5	40954982	+
5CDS-intron	ENST00000394934	ENST00000313164		TCGA	RV	SKCM	TCGA-FR-A8YE-06A	PSAP	chr10	73576058	-	C7	chr5	40954982	+
5CDS-intron	ENST00000394934	ENST00000494960		TCGA	RV	SKCM	TCGA-FR-A8YE-06A	PSAP	chr10	73576058	-	C7	chr5	40954982	+
intron-3CDS	ENST00000249330	ENST00000263593		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
intron-intron	ENST00000249330	ENST00000545756		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
intron-intron	ENST00000249330	ENST00000525730		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000445482	ENST00000263593		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000445482	ENST00000545756		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000445482	ENST00000525730		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	SKCM	TCGA-BF-AAP8-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
In-frame	ENST00000338316	ENST00000320895		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
In-frame	ENST00000338316	ENST00000507807		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
In-frame	ENST00000338316	ENST00000320927		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
5CDS-5UTR	ENST00000338316	ENST00000506641		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
In-frame	ENST00000537121	ENST00000320895		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
In-frame	ENST00000537121	ENST00000507807		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
In-frame	ENST00000537121	ENST00000320927		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
5CDS-5UTR	ENST00000537121	ENST00000506641		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
intron-3CDS	ENST00000513693	ENST00000320895		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
intron-3CDS	ENST00000513693	ENST00000507807		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
intron-3CDS	ENST00000513693	ENST00000320927		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
intron-5UTR	ENST00000513693	ENST00000506641		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7789913	+	CLPTM1L	chr5	1320846	-
intron-5UTR	ENST00000417172	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000417172	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-5UTR	ENST00000361388	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000361388	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-5UTR	ENST00000422748	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000422748	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-5UTR	ENST00000361675	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000361675	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-5UTR	ENST00000361901	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000361901	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
5CDS-5UTR	ENST00000393118	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
5CDS-intron	ENST00000393118	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
5CDS-5UTR	ENST00000495522	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
5CDS-intron	ENST00000495522	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
5CDS-5UTR	ENST00000424922	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
5CDS-intron	ENST00000424922	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-5UTR	ENST00000543443	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000543443	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-5UTR	ENST00000466704	ENST00000367137		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-intron	ENST00000466704	ENST00000468057		TCGA	RV	SKCM	TCGA-FS-A1ZU-06A	CALD1	chr7	134576424	+	SLC41A1	chr1	205780215	-
intron-3CDS	ENST00000524630	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-intron	ENST00000524630	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-intron	ENST00000524630	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-3CDS	ENST00000529919	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-intron	ENST00000529919	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-intron	ENST00000529919	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-3CDS	ENST00000399039	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-intron	ENST00000399039	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
intron-intron	ENST00000399039	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000360682	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000360682	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000360682	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000361796	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000361796	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000361796	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000361391	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000361391	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000361391	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000530094	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000530094	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000530094	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000428599	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000428599	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000428599	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000361332	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000361332	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000361332	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000527467	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000527467	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000527467	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000415361	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000415361	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000415361	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000532245	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532245	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532245	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000532463	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532463	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532463	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000528232	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000528232	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000528232	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000529986	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000529986	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000529986	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000531014	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000531014	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000531014	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000358694	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000358694	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000358694	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000526772	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000526772	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000526772	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000532787	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532787	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532787	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000533667	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000533667	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000533667	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000529873	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000529873	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000529873	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000525902	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000525902	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000525902	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000529526	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000529526	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000529526	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000532649	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532649	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532649	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000426142	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000426142	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000426142	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000532844	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532844	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000532844	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000528621	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000528621	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000528621	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000399050	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000399050	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000399050	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000526357	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000526357	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000526357	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000530748	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000530748	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000530748	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000534579	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000534579	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000534579	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-3CDS	ENST00000526938	ENST00000320580		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000526938	ENST00000529757		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
5UTR-intron	ENST00000526938	ENST00000524815		TCGA	RV	SKCM	TCGA-D3-A2JB-06A	CTNND1	chr11	57529518	+	PACS1	chr11	65960957	+
Frame-shit	ENST00000398743	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000398743	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5CDS-intron	ENST00000398743	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000398741	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000398741	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5CDS-intron	ENST00000398741	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000543184	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000543184	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5CDS-intron	ENST00000543184	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000405655	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000405655	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5CDS-intron	ENST00000405655	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-3CDS	ENST00000539862	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-3CDS	ENST00000539862	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-intron	ENST00000539862	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000402697	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000402697	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5CDS-intron	ENST00000402697	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-3CDS	ENST00000424204	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-3CDS	ENST00000424204	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-intron	ENST00000424204	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-3CDS	ENST00000485532	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-3CDS	ENST00000485532	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
intron-intron	ENST00000485532	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000406503	ENST00000216254		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000406503	ENST00000396512		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5CDS-intron	ENST00000406503	ENST00000466237		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	PRAME	chr22	22899232	-	ACO2	chr22	41903795	+
5UTR-intron	ENST00000340360	ENST00000533988		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000524490		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000334736		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000343878		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000525959		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000533248		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000525919		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000524767		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000525038		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000340360	ENST00000529032		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000533988		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000524490		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000334736		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000343878		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000525959		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000533248		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000525919		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000524767		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000525038		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000321448	ENST00000529032		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000533988		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000524490		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000334736		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000343878		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000525959		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000533248		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000525919		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000524767		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000525038		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000527087	ENST00000529032		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000533988		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000524490		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000334736		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000343878		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000525959		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000533248		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000525919		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000524767		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000525038		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
5UTR-intron	ENST00000533598	ENST00000529032		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	XRRA1	chr11	74659973	-	C11orf30	chr11	76174865	+
In-frame	ENST00000290429	ENST00000454366		TCGA	RV	SKCM	TCGA-ER-A197-06A	MCAT	chr22	43533087	-	GTSE1	chr22	46708038	+
intron-3CDS	ENST00000327555	ENST00000454366		TCGA	RV	SKCM	TCGA-ER-A197-06A	MCAT	chr22	43533087	-	GTSE1	chr22	46708038	+
intron-3CDS	ENST00000464244	ENST00000454366		TCGA	RV	SKCM	TCGA-ER-A197-06A	MCAT	chr22	43533087	-	GTSE1	chr22	46708038	+
3UTR-3CDS	ENST00000505350	ENST00000262462		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
3UTR-3CDS	ENST00000505350	ENST00000395266		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
3UTR-3CDS	ENST00000505350	ENST00000506176		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
5UTR-3CDS	ENST00000457016	ENST00000262462		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
5UTR-3CDS	ENST00000457016	ENST00000395266		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
5UTR-3CDS	ENST00000457016	ENST00000506176		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000257430	ENST00000262462		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000257430	ENST00000395266		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000257430	ENST00000506176		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000508376	ENST00000262462		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000508376	ENST00000395266		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000508376	ENST00000506176		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	APC	chr5	112043579	+	SLC27A6	chr5	128364038	+
intron-3CDS	ENST00000504387	ENST00000344537		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000504387	ENST00000355917		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000504387	ENST00000338950		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000504387	ENST00000462989		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379446	ENST00000344537		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379446	ENST00000355917		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379446	ENST00000338950		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379446	ENST00000462989		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379433	ENST00000344537		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379433	ENST00000355917		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379433	ENST00000338950		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
Frame-shit	ENST00000379433	ENST00000462989		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000508800	ENST00000344537		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000508800	ENST00000355917		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000508800	ENST00000338950		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000508800	ENST00000462989		TCGA	RV	SKCM	TCGA-EB-A85J-01A	NEDD9	chr6	11232737	-	DTNBP1	chr6	15533626	-
intron-3CDS	ENST00000413465	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000413465	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000413465	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-intron	ENST00000413465	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000359597	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000359597	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000359597	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-intron	ENST00000359597	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000269305	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000269305	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000269305	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-intron	ENST00000269305	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000455263	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000455263	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000455263	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-intron	ENST00000455263	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000420246	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000420246	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000420246	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-intron	ENST00000420246	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000445888	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000445888	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-3CDS	ENST00000445888	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
5UTR-intron	ENST00000445888	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000574684	ENST00000380358		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000574684	ENST00000358181		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-3CDS	ENST00000574684	ENST00000330494		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
intron-intron	ENST00000574684	ENST00000570758		TCGA	RV	SKCM	TCGA-EE-A2GU-06A	TP53	chr17	7590695	-	CHD3	chr17	7798657	+
Frame-shit	ENST00000380916	ENST00000369409		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	ZDHHC21	chr9	14639894	-	PHGDH	chr1	120277257	+
Frame-shit	ENST00000380916	ENST00000369407		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	ZDHHC21	chr9	14639894	-	PHGDH	chr1	120277257	+
5CDS-intron	ENST00000380916	ENST00000482968		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	ZDHHC21	chr9	14639894	-	PHGDH	chr1	120277257	+
intron-3CDS	ENST00000497966	ENST00000369409		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	ZDHHC21	chr9	14639894	-	PHGDH	chr1	120277257	+
intron-3CDS	ENST00000497966	ENST00000369407		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	ZDHHC21	chr9	14639894	-	PHGDH	chr1	120277257	+
intron-intron	ENST00000497966	ENST00000482968		TCGA	RV	SKCM	TCGA-DA-A3F3-06A	ZDHHC21	chr9	14639894	-	PHGDH	chr1	120277257	+
Frame-shit	ENST00000593829	ENST00000308595		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	LSM4	chr19	18433828	-	ADRBK1	chr11	67046671	+
Frame-shit	ENST00000593829	ENST00000526285		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	LSM4	chr19	18433828	-	ADRBK1	chr11	67046671	+
5CDS-intron	ENST00000593829	ENST00000527176		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	LSM4	chr19	18433828	-	ADRBK1	chr11	67046671	+
Frame-shit	ENST00000252816	ENST00000308595		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	LSM4	chr19	18433828	-	ADRBK1	chr11	67046671	+
Frame-shit	ENST00000252816	ENST00000526285		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	LSM4	chr19	18433828	-	ADRBK1	chr11	67046671	+
5CDS-intron	ENST00000252816	ENST00000527176		TCGA	RV	SKCM	TCGA-D3-A8GB-06A	LSM4	chr19	18433828	-	ADRBK1	chr11	67046671	+
Frame-shit	ENST00000262879	ENST00000426836		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000262879	ENST00000373745		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000262879	ENST00000373740		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000262879	ENST00000448110		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000262879	ENST00000473615		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000262879	ENST00000373750		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000262879	ENST00000373734		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397042	ENST00000426836		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397042	ENST00000373745		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397042	ENST00000373740		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397042	ENST00000448110		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000397042	ENST00000473615		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000397042	ENST00000373750		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000397042	ENST00000373734		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-3CDS	ENST00000397038	ENST00000426836		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-3CDS	ENST00000397038	ENST00000373745		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-3CDS	ENST00000397038	ENST00000373740		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-3CDS	ENST00000397038	ENST00000448110		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-5UTR	ENST00000397038	ENST00000473615		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-5UTR	ENST00000397038	ENST00000373750		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-5UTR	ENST00000397038	ENST00000373734		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000537204	ENST00000426836		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000537204	ENST00000373745		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000537204	ENST00000373740		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000537204	ENST00000448110		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000537204	ENST00000473615		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000537204	ENST00000373750		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000537204	ENST00000373734		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397040	ENST00000426836		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397040	ENST00000373745		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397040	ENST00000373740		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
Frame-shit	ENST00000397040	ENST00000448110		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000397040	ENST00000473615		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000397040	ENST00000373750		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5CDS-5UTR	ENST00000397040	ENST00000373734		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-3CDS	ENST00000490114	ENST00000426836		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-3CDS	ENST00000490114	ENST00000373745		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-3CDS	ENST00000490114	ENST00000373740		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-3CDS	ENST00000490114	ENST00000448110		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-5UTR	ENST00000490114	ENST00000473615		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-5UTR	ENST00000490114	ENST00000373750		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
intron-5UTR	ENST00000490114	ENST00000373734		TCGA	RV	SKCM	TCGA-FS-A1ZE-06A	RALGAPB	chr20	37121775	+	DSN1	chr20	35390951	-
5UTR-5UTR	ENST00000392259	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000309955		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000443227		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000341222		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000340870		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000355558		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000341582		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000342795		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000395148		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000423241		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000490965		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000440180		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000457277		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000494258		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000479953		TCGA	RV	SKCM	TCGA-WE-A8K4-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
In-frame	ENST00000283928	ENST00000396299		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
In-frame	ENST00000283928	ENST00000357727		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
In-frame	ENST00000283928	ENST00000396300		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
In-frame	ENST00000283928	ENST00000409603		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
5CDS-intron	ENST00000283928	ENST00000396298		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
5CDS-intron	ENST00000283928	ENST00000482692		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
intron-3CDS	ENST00000466516	ENST00000396299		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
intron-3CDS	ENST00000466516	ENST00000357727		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
intron-3CDS	ENST00000466516	ENST00000396300		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
intron-3CDS	ENST00000466516	ENST00000409603		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
intron-intron	ENST00000466516	ENST00000396298		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
intron-intron	ENST00000466516	ENST00000482692		TCGA	RV	SKCM	TCGA-YG-AA3O-06A	JAZF1	chr7	28220082	-	CREB5	chr7	28609983	+
In-frame	ENST00000379568	ENST00000230588		TCGA	RV	SKCM	TCGA-GN-A268-06A	PAK1IP1	chr6	10702872	+	MEP1A	chr6	46787266	+
5UTR-3CDS	ENST00000361682	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000361682	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000361682	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000361682	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-3CDS	ENST00000403184	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000403184	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000403184	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000403184	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-3CDS	ENST00000403710	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000403710	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000403710	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000403710	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-3CDS	ENST00000407537	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000407537	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-5UTR	ENST00000407537	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
5UTR-intron	ENST00000407537	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-3CDS	ENST00000406520	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000406520	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000406520	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-intron	ENST00000406520	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-3CDS	ENST00000449653	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000449653	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000449653	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-intron	ENST00000449653	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-3CDS	ENST00000493893	ENST00000424784		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000493893	ENST00000503758		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-5UTR	ENST00000493893	ENST00000283441		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
intron-intron	ENST00000493893	ENST00000511539		TCGA	RV	SKCM	TCGA-EE-A184-06A	COMT	chr22	19929420	+	ZDHHC11	chr5	825366	-
In-frame	ENST00000343979	ENST00000358368		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF136	chr19	12274021	+	XAB2	chr19	7693184	-
In-frame	ENST00000343979	ENST00000534844		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF136	chr19	12274021	+	XAB2	chr19	7693184	-
5UTR-3CDS	ENST00000398616	ENST00000358368		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF136	chr19	12274021	+	XAB2	chr19	7693184	-
5UTR-3CDS	ENST00000398616	ENST00000534844		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	ZNF136	chr19	12274021	+	XAB2	chr19	7693184	-
In-frame	ENST00000356554	ENST00000313382		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369354		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369356		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000530740		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369359		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369351		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369349		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369347		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369348		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000524974		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000313431		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000529945		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000479408		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000493130		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000478649		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
5CDS-intron	ENST00000356554	ENST00000369345		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-3CDS	ENST00000482811	ENST00000313382		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369354		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369356		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000530740		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369359		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369351		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369349		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369347		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369348		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000524974		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000313431		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000529945		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000479408		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000493130		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000478649		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
3UTR-intron	ENST00000482811	ENST00000369345		TCGA	RV	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	PDE4DIP	chr1	145021167	-
Frame-shit	ENST00000545145	ENST00000266688		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000545145	ENST00000547485		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
Frame-shit	ENST00000392561	ENST00000266688		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000392561	ENST00000547485		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
Frame-shit	ENST00000261741	ENST00000266688		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
5CDS-intron	ENST00000261741	ENST00000547485		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000553232	ENST00000266688		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
intron-intron	ENST00000553232	ENST00000547485		TCGA	RV	SKCM	TCGA-D3-A3BZ-06A	RBM19	chr12	114352774	-	PTPRQ	chr12	80981908	+
intron-3CDS	ENST00000437508	ENST00000535741		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-3CDS	ENST00000437508	ENST00000510413		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000437508	ENST00000503716		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000437508	ENST00000357115		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000437508	ENST00000507224		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-3CDS	ENST00000494872	ENST00000535741		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-3CDS	ENST00000494872	ENST00000510413		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000494872	ENST00000503716		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000494872	ENST00000357115		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000494872	ENST00000507224		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-3CDS	ENST00000338700	ENST00000535741		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-3CDS	ENST00000338700	ENST00000510413		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000338700	ENST00000503716		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000338700	ENST00000357115		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
intron-intron	ENST00000338700	ENST00000507224		TCGA	RV	SKCM	TCGA-FW-A3R5-06A	TRIM2	chr4	154073764	+	LRBA	chr4	151738409	-
In-frame	ENST00000312413	ENST00000251849		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000312413	ENST00000442415		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000312413	ENST00000534997		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000312413	ENST00000542177		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000346436	ENST00000251849		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000346436	ENST00000442415		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000346436	ENST00000534997		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000346436	ENST00000542177		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376497	ENST00000251849		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376497	ENST00000442415		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376497	ENST00000534997		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376497	ENST00000542177		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376487	ENST00000251849		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376487	ENST00000442415		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376487	ENST00000534997		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376487	ENST00000542177		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376496	ENST00000251849		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376496	ENST00000442415		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376496	ENST00000534997		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
In-frame	ENST00000376496	ENST00000542177		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000376492	ENST00000251849		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000376492	ENST00000442415		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000376492	ENST00000534997		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000376492	ENST00000542177		TCGA	RV	SKCM	TCGA-ER-A19L-06A	CLCN6	chr1	11867247	+	RAF1	chr3	12641914	-
5UTR-3CDS	ENST00000538941	ENST00000267970		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-3CDS	ENST00000538941	ENST00000346495		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-intron	ENST00000538941	ENST00000424443		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-5UTR	ENST00000538941	ENST00000561277		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-intron	ENST00000538941	ENST00000559494		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-5UTR	ENST00000538941	ENST00000558745		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-5UTR	ENST00000538941	ENST00000558394		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000563290	ENST00000267970		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
Frame-shit	ENST00000563290	ENST00000346495		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000563290	ENST00000424443		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000563290	ENST00000561277		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000563290	ENST00000559494		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000563290	ENST00000558745		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000563290	ENST00000558394		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
In-frame	ENST00000324767	ENST00000267970		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
In-frame	ENST00000324767	ENST00000346495		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000324767	ENST00000424443		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000324767	ENST00000561277		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-intron	ENST00000324767	ENST00000559494		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000324767	ENST00000558745		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5CDS-5UTR	ENST00000324767	ENST00000558394		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000562890	ENST00000267970		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-3CDS	ENST00000562890	ENST00000346495		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000562890	ENST00000424443		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000562890	ENST00000561277		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-intron	ENST00000562890	ENST00000559494		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000562890	ENST00000558745		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
intron-5UTR	ENST00000562890	ENST00000558394		TCGA	RV	SKCM	TCGA-EE-A29D-06A	SCAPER	chr15	77134075	-	TSPAN3	chr15	77348597	-
5UTR-3CDS	ENST00000378308	ENST00000380087		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	USP9X	chrX	40945362	+	RBBP7	chrX	16881223	-
5UTR-3CDS	ENST00000378308	ENST00000380084		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	USP9X	chrX	40945362	+	RBBP7	chrX	16881223	-
5UTR-3CDS	ENST00000378308	ENST00000404022		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	USP9X	chrX	40945362	+	RBBP7	chrX	16881223	-
5UTR-3CDS	ENST00000324545	ENST00000380087		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	USP9X	chrX	40945362	+	RBBP7	chrX	16881223	-
5UTR-3CDS	ENST00000324545	ENST00000380084		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	USP9X	chrX	40945362	+	RBBP7	chrX	16881223	-
5UTR-3CDS	ENST00000324545	ENST00000404022		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	USP9X	chrX	40945362	+	RBBP7	chrX	16881223	-
Frame-shit	ENST00000401605	ENST00000281017		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000401605	ENST00000355654		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000401605	ENST00000405941		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
intron-3CDS	ENST00000401617	ENST00000281017		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
intron-3CDS	ENST00000401617	ENST00000355654		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
intron-3CDS	ENST00000401617	ENST00000405941		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000404424	ENST00000281017		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000404424	ENST00000355654		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000404424	ENST00000405941		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000320081	ENST00000281017		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000320081	ENST00000355654		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
Frame-shit	ENST00000320081	ENST00000405941		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
intron-3CDS	ENST00000481628	ENST00000281017		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
intron-3CDS	ENST00000481628	ENST00000355654		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
intron-3CDS	ENST00000481628	ENST00000405941		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	CLIP4	chr2	29344387	+	TMEM18	chr2	675630	-
5CDS-intron	ENST00000368594	ENST00000368615		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368594	ENST00000392638		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000344079		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000356571		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368614		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368613		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368612		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000368610		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368594	ENST00000432555		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368594	ENST00000475747		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368615		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368593	ENST00000392638		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000344079		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000356571		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368614		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368613		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368612		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000368610		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-intron	ENST00000368593	ENST00000432555		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
5CDS-3UTR	ENST00000368593	ENST00000475747		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368615		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-3UTR	ENST00000487614	ENST00000392638		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000344079		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000356571		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368614		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368613		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368612		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000368610		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-intron	ENST00000487614	ENST00000432555		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
intron-3UTR	ENST00000487614	ENST00000475747		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	INPP5A	chr10	134421460	+	LRRC27	chr10	134174961	+
Frame-shit	ENST00000360655	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000360655	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000360655	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000360655	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000360655	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-3UTR	ENST00000360655	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-intron	ENST00000360655	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396085	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396085	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396085	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396085	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396085	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-3UTR	ENST00000396085	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-intron	ENST00000396085	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000349880	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000349880	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000349880	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000349880	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000349880	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-3UTR	ENST00000349880	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-intron	ENST00000349880	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396087	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396087	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396087	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396087	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000396087	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-3UTR	ENST00000396087	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-intron	ENST00000396087	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000527559	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000527559	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000527559	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000527559	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000527559	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-3UTR	ENST00000527559	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-intron	ENST00000527559	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000540292	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000540292	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000540292	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000540292	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
Frame-shit	ENST00000540292	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-3UTR	ENST00000540292	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-intron	ENST00000540292	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000533917	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000533917	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000533917	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000533917	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000533917	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3UTR	ENST00000533917	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-intron	ENST00000533917	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000311043	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000311043	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000311043	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000311043	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000311043	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3UTR	ENST00000311043	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-intron	ENST00000311043	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000534229	ENST00000543086		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000534229	ENST00000546231		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000534229	ENST00000397203		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000534229	ENST00000360905		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3CDS	ENST00000534229	ENST00000589028		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-3UTR	ENST00000534229	ENST00000355446		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
intron-intron	ENST00000534229	ENST00000536573		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	NAV2	chr11	19914140	+	ERC1	chr12	1599259	+
5CDS-5UTR	ENST00000549920	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000549920	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000549920	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000549920	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000550645	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000550645	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000550645	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000550645	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000552588	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000552588	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000552588	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000552588	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000549273	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-intron	ENST00000549273	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000549273	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-intron	ENST00000549273	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-01A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000549920	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000549920	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000549920	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000549920	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000550645	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000550645	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000550645	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000550645	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000552588	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000552588	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000552588	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-intron	ENST00000552588	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000549273	ENST00000376876		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-intron	ENST00000549273	ENST00000376875		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-5UTR	ENST00000549273	ENST00000317669		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
intron-intron	ENST00000549273	ENST00000480105		TCGA	RV	SKCM	TCGA-D9-A4Z6-06A	RPL18	chr19	49118590	-	SLC38A5	chrX	48327824	-
5CDS-5UTR	ENST00000406875	ENST00000432884		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
5CDS-5UTR	ENST00000406875	ENST00000262942		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
5CDS-intron	ENST00000406875	ENST00000471960		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
5CDS-5UTR	ENST00000428878	ENST00000432884		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
5CDS-5UTR	ENST00000428878	ENST00000262942		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
5CDS-intron	ENST00000428878	ENST00000471960		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
intron-5UTR	ENST00000342645	ENST00000432884		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
intron-5UTR	ENST00000342645	ENST00000262942		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
intron-intron	ENST00000342645	ENST00000471960		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	HIPK2	chr7	139477404	-	ARPC1A	chr7	98935804	+
5UTR-5UTR	ENST00000473039	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5UTR-5UTR	ENST00000473039	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5UTR-3UTR	ENST00000473039	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000373624	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000373624	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000373624	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000542603	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000542603	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000542603	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000394219	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000394219	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000394219	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000373620	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000373620	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000373620	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000394215	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000394215	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000394215	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000373618	ENST00000498485		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000373618	ENST00000259457		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000373618	ENST00000536392		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	DENND1A	chr9	126345448	-	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000396373	ENST00000326245		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ETV6	chr12	11803094	+	ITLN1	chr1	160854673	-
5CDS-intron	ENST00000396373	ENST00000487531		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ETV6	chr12	11803094	+	ITLN1	chr1	160854673	-
3UTR-5UTR	ENST00000544715	ENST00000326245		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ETV6	chr12	11803094	+	ITLN1	chr1	160854673	-
3UTR-intron	ENST00000544715	ENST00000487531		TCGA	RV	SKCM	TCGA-W3-AA1V-06B	ETV6	chr12	11803094	+	ITLN1	chr1	160854673	-
intron-3CDS	ENST00000512913	ENST00000341056		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000512913	ENST00000396045		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000512913	ENST00000310758		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000512913	ENST00000396040		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000512913	ENST00000442504		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000512913	ENST00000448602		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000512913	ENST00000479447		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-3CDS	ENST00000265073	ENST00000341056		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000265073	ENST00000396045		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000265073	ENST00000310758		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000265073	ENST00000396040		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000265073	ENST00000442504		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000265073	ENST00000448602		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000265073	ENST00000479447		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-3CDS	ENST00000515355	ENST00000341056		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000515355	ENST00000396045		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000515355	ENST00000310758		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000515355	ENST00000396040		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000515355	ENST00000442504		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000515355	ENST00000448602		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000515355	ENST00000479447		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-3CDS	ENST00000502897	ENST00000341056		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000502897	ENST00000396045		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000502897	ENST00000310758		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000502897	ENST00000396040		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000502897	ENST00000442504		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000502897	ENST00000448602		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
5UTR-intron	ENST00000502897	ENST00000479447		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-3CDS	ENST00000504789	ENST00000341056		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000504789	ENST00000396045		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000504789	ENST00000310758		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000504789	ENST00000396040		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000504789	ENST00000442504		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000504789	ENST00000448602		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
intron-intron	ENST00000504789	ENST00000479447		TCGA	RV	SKCM	TCGA-EB-A44R-06A	SUB1	chr5	32585731	+	ELMO1	chr7	37172839	-
Frame-shit	ENST00000258796	ENST00000402746		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
In-frame	ENST00000258796	ENST00000399654		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000258796	ENST00000406869		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000258796	ENST00000265854		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000258796	ENST00000486340		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000407643	ENST00000402746		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
In-frame	ENST00000407643	ENST00000399654		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000407643	ENST00000406869		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000407643	ENST00000265854		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000407643	ENST00000486340		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000403167	ENST00000402746		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000403167	ENST00000399654		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000403167	ENST00000406869		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000403167	ENST00000265854		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-intron	ENST00000403167	ENST00000486340		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000477439	ENST00000402746		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000477439	ENST00000399654		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000477439	ENST00000406869		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000477439	ENST00000265854		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
intron-intron	ENST00000477439	ENST00000486340		TCGA	RV	SKCM	TCGA-Z2-AA3V-06A	TTYH3	chr7	2671912	+	MAD1L1	chr7	1855864	-
In-frame	ENST00000360079	ENST00000264914		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000360079	ENST00000396151		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000360079	ENST00000565165		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
5CDS-intron	ENST00000360079	ENST00000521800		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000402580	ENST00000264914		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000402580	ENST00000396151		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000402580	ENST00000565165		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
5CDS-intron	ENST00000402580	ENST00000521800		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-3CDS	ENST00000428575	ENST00000264914		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-3CDS	ENST00000428575	ENST00000396151		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-3CDS	ENST00000428575	ENST00000565165		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-intron	ENST00000428575	ENST00000521800		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000359308	ENST00000264914		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000359308	ENST00000396151		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000359308	ENST00000565165		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
5CDS-intron	ENST00000359308	ENST00000521800		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000405878	ENST00000264914		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000405878	ENST00000396151		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000405878	ENST00000565165		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
5CDS-intron	ENST00000405878	ENST00000521800		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-3CDS	ENST00000405506	ENST00000264914		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-3CDS	ENST00000405506	ENST00000396151		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-3CDS	ENST00000405506	ENST00000565165		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
intron-intron	ENST00000405506	ENST00000521800		TCGA	RV	SKCM	TCGA-XV-AAZY-01A	XRCC6	chr22	42024234	+	ARSB	chr5	78265015	-
In-frame	ENST00000263321	ENST00000260228		TCGA	RV	SKCM	TCGA-EB-A57M-01A	TYR	chr11	88924586	+	MMP20	chr11	102480761	-
5CDS-intron	ENST00000263321	ENST00000544938		TCGA	RV	SKCM	TCGA-EB-A57M-01A	TYR	chr11	88924586	+	MMP20	chr11	102480761	-
3UTR-3CDS	ENST00000526139	ENST00000260228		TCGA	RV	SKCM	TCGA-EB-A57M-01A	TYR	chr11	88924586	+	MMP20	chr11	102480761	-
3UTR-intron	ENST00000526139	ENST00000544938		TCGA	RV	SKCM	TCGA-EB-A57M-01A	TYR	chr11	88924586	+	MMP20	chr11	102480761	-
Frame-shit	ENST00000394196	ENST00000258873		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000394196	ENST00000541759		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000394196	ENST00000560817		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
5CDS-intron	ENST00000394196	ENST00000558828		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000557381	ENST00000258873		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000557381	ENST00000541759		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000557381	ENST00000560817		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
5CDS-intron	ENST00000557381	ENST00000558828		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000420239	ENST00000258873		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000420239	ENST00000541759		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
Frame-shit	ENST00000420239	ENST00000560817		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
5CDS-intron	ENST00000420239	ENST00000558828		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
intron-3CDS	ENST00000536619	ENST00000258873		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
intron-3CDS	ENST00000536619	ENST00000541759		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
intron-3CDS	ENST00000536619	ENST00000560817		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
intron-intron	ENST00000536619	ENST00000558828		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
3UTR-3CDS	ENST00000554122	ENST00000258873		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
3UTR-3CDS	ENST00000554122	ENST00000541759		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
3UTR-3CDS	ENST00000554122	ENST00000560817		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
3UTR-intron	ENST00000554122	ENST00000558828		TCGA	RV	SKCM	TCGA-ER-A197-06A	CHD2	chr15	93444529	+	ACSBG1	chr15	78466181	-
5CDS-5UTR	ENST00000374864	ENST00000375114		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000374864	ENST00000246194		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000374864	ENST00000493399		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
intron-5UTR	ENST00000535650	ENST00000375114		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
intron-5UTR	ENST00000535650	ENST00000246194		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
intron-intron	ENST00000535650	ENST00000493399		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000262650	ENST00000375114		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000262650	ENST00000246194		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000262650	ENST00000493399		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
intron-5UTR	ENST00000483727	ENST00000375114		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
intron-5UTR	ENST00000483727	ENST00000246194		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
intron-intron	ENST00000483727	ENST00000493399		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	ITCH	chr20	32996598	+	RALY	chr20	32619328	+
Frame-shit	ENST00000546361	ENST00000253680		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000546361	ENST00000397372		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000546361	ENST00000593154		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000546361	ENST00000588246		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000198939	ENST00000253680		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000198939	ENST00000397372		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000198939	ENST00000593154		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
Frame-shit	ENST00000198939	ENST00000588246		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
intron-3CDS	ENST00000544299	ENST00000253680		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
intron-3CDS	ENST00000544299	ENST00000397372		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
intron-3CDS	ENST00000544299	ENST00000593154		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
intron-3CDS	ENST00000544299	ENST00000588246		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	CHERP	chr19	16643409	-	HSH2D	chr19	16268020	+
5CDS-5UTR	ENST00000337554	ENST00000382275		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000337554	ENST00000507958		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000337554	ENST00000502796		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000337554	ENST00000511273		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000337554	ENST00000274170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000337554	ENST00000506372		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000337554	ENST00000510297		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000396265	ENST00000382275		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000396265	ENST00000507958		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000396265	ENST00000502796		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000396265	ENST00000511273		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000396265	ENST00000274170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000396265	ENST00000506372		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000396265	ENST00000510297		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000583777	ENST00000382275		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000583777	ENST00000507958		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000583777	ENST00000502796		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000583777	ENST00000511273		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000583777	ENST00000274170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000583777	ENST00000506372		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000583777	ENST00000510297		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000329563	ENST00000382275		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000329563	ENST00000507958		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-5UTR	ENST00000329563	ENST00000502796		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000329563	ENST00000511273		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000329563	ENST00000274170		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000329563	ENST00000506372		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
5CDS-intron	ENST00000329563	ENST00000510297		TCGA	RV	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43557196	+	CDH18	chr5	19981287	-
Frame-shit	ENST00000263119	ENST00000407936		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000263119	ENST00000405557		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000263119	ENST00000442738		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000263119	ENST00000460648		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000263119	ENST00000488684		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000263119	ENST00000606538		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000263119	ENST00000470701		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
5CDS-intron	ENST00000263119	ENST00000608713		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000407936		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000405557		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000442738		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000460648		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000488684		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000606538		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000405822	ENST00000470701		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
5CDS-intron	ENST00000405822	ENST00000608713		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000407936		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000405557		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000442738		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000460648		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000488684		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000606538		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000398319	ENST00000470701		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
5CDS-intron	ENST00000398319	ENST00000608713		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000407936		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000405557		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000442738		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000460648		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000488684		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000606538		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000337989	ENST00000470701		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-intron	ENST00000337989	ENST00000608713		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000407936		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000405557		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000442738		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000460648		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000488684		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000606538		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-3CDS	ENST00000485008	ENST00000470701		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
intron-intron	ENST00000485008	ENST00000608713		TCGA	RV	SKCM	TCGA-GN-A8LN-01A	CABIN1	chr22	24530382	+	POLR2F	chr22	38352780	+
Frame-shit	ENST00000436008	ENST00000544974		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000436008	ENST00000560369		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000436008	ENST00000260382		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000436008	ENST00000443425		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-5UTR	ENST00000436008	ENST00000560691		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-3UTR	ENST00000436008	ENST00000436542		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-intron	ENST00000436008	ENST00000560158		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000406686	ENST00000544974		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000406686	ENST00000560369		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000406686	ENST00000260382		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000406686	ENST00000443425		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-5UTR	ENST00000406686	ENST00000560691		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-3UTR	ENST00000406686	ENST00000436542		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-intron	ENST00000406686	ENST00000560158		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380302	ENST00000544974		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380302	ENST00000560369		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380302	ENST00000260382		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380302	ENST00000443425		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-5UTR	ENST00000380302	ENST00000560691		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-3UTR	ENST00000380302	ENST00000436542		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-intron	ENST00000380302	ENST00000560158		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
In-frame	ENST00000490273	ENST00000544974		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
In-frame	ENST00000490273	ENST00000560369		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
In-frame	ENST00000490273	ENST00000260382		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
In-frame	ENST00000490273	ENST00000443425		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-5UTR	ENST00000490273	ENST00000560691		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-3UTR	ENST00000490273	ENST00000436542		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-intron	ENST00000490273	ENST00000560158		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380298	ENST00000544974		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380298	ENST00000560369		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380298	ENST00000260382		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000380298	ENST00000443425		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-5UTR	ENST00000380298	ENST00000560691		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-3UTR	ENST00000380298	ENST00000436542		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
5CDS-intron	ENST00000380298	ENST00000560158		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-3CDS	ENST00000433689	ENST00000544974		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-3CDS	ENST00000433689	ENST00000560369		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-3CDS	ENST00000433689	ENST00000260382		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-3CDS	ENST00000433689	ENST00000443425		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-5UTR	ENST00000433689	ENST00000560691		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-3UTR	ENST00000433689	ENST00000436542		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
intron-intron	ENST00000433689	ENST00000560158		TCGA	RV	SKCM	TCGA-YD-A89C-06A	SLC22A23	chr6	3410422	-	LRRC49	chr15	71196891	+
Frame-shit	ENST00000262013	ENST00000528498		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000262013	ENST00000528900		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000262013	ENST00000405097		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000262013	ENST00000530301		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000262013	ENST00000343115		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000262013	ENST00000544551		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000505279	ENST00000528498		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000505279	ENST00000528900		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000505279	ENST00000405097		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000505279	ENST00000530301		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000505279	ENST00000343115		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000505279	ENST00000544551		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000357122	ENST00000528498		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000357122	ENST00000528900		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
Frame-shit	ENST00000357122	ENST00000405097		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000357122	ENST00000530301		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000357122	ENST00000343115		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5CDS-intron	ENST00000357122	ENST00000544551		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-3CDS	ENST00000509724	ENST00000528498		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-3CDS	ENST00000509724	ENST00000528900		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-3CDS	ENST00000509724	ENST00000405097		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-intron	ENST00000509724	ENST00000530301		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-intron	ENST00000509724	ENST00000343115		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-intron	ENST00000509724	ENST00000544551		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-3CDS	ENST00000510283	ENST00000528498		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-3CDS	ENST00000510283	ENST00000528900		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-3CDS	ENST00000510283	ENST00000405097		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-intron	ENST00000510283	ENST00000530301		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-intron	ENST00000510283	ENST00000343115		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
intron-intron	ENST00000510283	ENST00000544551		TCGA	RV	SKCM	TCGA-ER-A19N-06A	SPAG9	chr17	49156945	-	RDX	chr11	110102758	-
5UTR-3CDS	ENST00000454177	ENST00000493112		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000454177	ENST00000307227		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-intron	ENST00000454177	ENST00000492795		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000429705	ENST00000493112		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000429705	ENST00000307227		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-intron	ENST00000429705	ENST00000492795		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000296088	ENST00000493112		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000296088	ENST00000307227		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-intron	ENST00000296088	ENST00000492795		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000437827	ENST00000493112		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000437827	ENST00000307227		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-intron	ENST00000437827	ENST00000492795		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
intron-3CDS	ENST00000462810	ENST00000493112		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
intron-3CDS	ENST00000462810	ENST00000307227		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
intron-intron	ENST00000462810	ENST00000492795		TCGA	RV	SKCM	TCGA-Z2-AA3S-06A	SNRK	chr3	43328167	+	SUCLG2	chr3	67451275	-
5UTR-3CDS	ENST00000423701	ENST00000276585		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000423701	ENST00000521434		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000423701	ENST00000521605		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-intron	ENST00000423701	ENST00000522987		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000273156	ENST00000276585		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000273156	ENST00000521434		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000273156	ENST00000521605		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-intron	ENST00000273156	ENST00000522987		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000417572	ENST00000276585		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000417572	ENST00000521434		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000417572	ENST00000521605		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000417572	ENST00000522987		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000536332	ENST00000276585		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000536332	ENST00000521434		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000536332	ENST00000521605		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-intron	ENST00000536332	ENST00000522987		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000264454	ENST00000276585		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000264454	ENST00000521434		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000264454	ENST00000521605		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-intron	ENST00000264454	ENST00000522987		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000493107	ENST00000276585		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000493107	ENST00000521434		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-3CDS	ENST00000493107	ENST00000521605		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
5UTR-intron	ENST00000493107	ENST00000522987		TCGA	RV	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623338	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000478423	ENST00000361570		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-3CDS	ENST00000478423	ENST00000304494		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-3CDS	ENST00000478423	ENST00000579755		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-3CDS	ENST00000478423	ENST00000579122		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000578845		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000530628		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000498124		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000498628		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000494262		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000446177		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000479692		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-5UTR	ENST00000478423	ENST00000497750		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
intron-intron	ENST00000478423	ENST00000470819		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000378156	ENST00000361570		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000378156	ENST00000304494		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000378156	ENST00000579755		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
In-frame	ENST00000378156	ENST00000579122		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000578845		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000530628		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000498124		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000498628		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000494262		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000446177		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000479692		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-5UTR	ENST00000378156	ENST00000497750		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
5CDS-intron	ENST00000378156	ENST00000470819		TCGA	RV	SKCM	TCGA-EE-A20H-06A	NPHP4	chr1	6046215	-	CDKN2A	chr9	21971207	-
Frame-shit	ENST00000551577	ENST00000550433		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000548513		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000549446		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000298972		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000341669		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000350228		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000540018		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000551577	ENST00000393288		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000551577	ENST00000548243		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000550433		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000548513		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000549446		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000298972		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000341669		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000350228		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000540018		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000266534	ENST00000393288		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000266534	ENST00000548243		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000550433		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000548513		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000549446		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000298972		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000341669		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000350228		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000540018		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
Frame-shit	ENST00000536799	ENST00000393288		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
5CDS-intron	ENST00000536799	ENST00000548243		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000550433		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000548513		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000549446		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000298972		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000341669		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000350228		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000540018		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-3CDS	ENST00000546978	ENST00000393288		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
intron-intron	ENST00000546978	ENST00000548243		TCGA	RV	SKCM	TCGA-D3-A51H-06A	TMEM117	chr12	44238731	+	KCNC2	chr12	75445097	-
In-frame	ENST00000389617	ENST00000295902		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	GXYLT2	chr3	72957710	+	PRICKLE2	chr3	64148805	-
In-frame	ENST00000389617	ENST00000564377		TCGA	RV	SKCM	TCGA-D3-A2JG-06A	GXYLT2	chr3	72957710	+	PRICKLE2	chr3	64148805	-
5UTR-intron	ENST00000498485	ENST00000482518		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5UTR-intron	ENST00000498485	ENST00000392054		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5UTR-intron	ENST00000498485	ENST00000409462		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5UTR-intron	ENST00000498485	ENST00000392055		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5UTR-intron	ENST00000498485	ENST00000354069		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000259457	ENST00000482518		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000259457	ENST00000392054		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000259457	ENST00000409462		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000259457	ENST00000392055		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000259457	ENST00000354069		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
3UTR-intron	ENST00000536392	ENST00000482518		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
3UTR-intron	ENST00000536392	ENST00000392054		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
3UTR-intron	ENST00000536392	ENST00000409462		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
3UTR-intron	ENST00000536392	ENST00000392055		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
3UTR-intron	ENST00000536392	ENST00000354069		TCGA	RV	SKCM	TCGA-EE-A2MC-06A	PSMB7	chr9	127146877	-	PID1	chr2	229890824	-
5CDS-intron	ENST00000361757	ENST00000374761		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-intron	ENST00000361757	ENST00000290101		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-intron	ENST00000361757	ENST00000374763		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-5UTR	ENST00000361757	ENST00000374765		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-5UTR	ENST00000361757	ENST00000542643		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-5UTR	ENST00000361757	ENST00000374757		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-intron	ENST00000587024	ENST00000374761		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-intron	ENST00000587024	ENST00000290101		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-intron	ENST00000587024	ENST00000374763		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-5UTR	ENST00000587024	ENST00000374765		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-5UTR	ENST00000587024	ENST00000542643		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
5CDS-5UTR	ENST00000587024	ENST00000374757		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-intron	ENST00000438103	ENST00000374761		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-intron	ENST00000438103	ENST00000290101		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-intron	ENST00000438103	ENST00000374763		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-5UTR	ENST00000438103	ENST00000374765		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-5UTR	ENST00000438103	ENST00000542643		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-5UTR	ENST00000438103	ENST00000374757		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	SBNO2	chr19	1154183	-	RAP1GAP	chr1	21976289	-
intron-3CDS	ENST00000464233	ENST00000402136		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000464233	ENST00000407315		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000464233	ENST00000402545		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-intron	ENST00000464233	ENST00000497486		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000436010	ENST00000402136		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000436010	ENST00000407315		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000436010	ENST00000402545		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-intron	ENST00000436010	ENST00000497486		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
In-frame	ENST00000495273	ENST00000402136		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
In-frame	ENST00000495273	ENST00000407315		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
In-frame	ENST00000495273	ENST00000402545		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
5CDS-intron	ENST00000495273	ENST00000497486		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
In-frame	ENST00000467549	ENST00000402136		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
In-frame	ENST00000467549	ENST00000407315		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
In-frame	ENST00000467549	ENST00000402545		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
5CDS-intron	ENST00000467549	ENST00000497486		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000466906	ENST00000402136		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000466906	ENST00000407315		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-3CDS	ENST00000466906	ENST00000402545		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
intron-intron	ENST00000466906	ENST00000497486		TCGA	RV	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78742498	-	THAP4	chr2	242545888	-
Frame-shit	ENST00000288602	ENST00000446450		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	BRAF	chr7	140507760	-	ATG7	chr3	11596285	+
In-frame	ENST00000288602	ENST00000354956		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	BRAF	chr7	140507760	-	ATG7	chr3	11596285	+
Frame-shit	ENST00000288602	ENST00000354449		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	BRAF	chr7	140507760	-	ATG7	chr3	11596285	+
5CDS-intron	ENST00000288602	ENST00000469654		TCGA	RV	SKCM	TCGA-BF-A5EP-01A	BRAF	chr7	140507760	-	ATG7	chr3	11596285	+
3UTR-intron	ENST00000398606	ENST00000534307		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
3UTR-intron	ENST00000398606	ENST00000528302		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
3UTR-intron	ENST00000398606	ENST00000322535		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000398603	ENST00000534307		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000398603	ENST00000528302		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
5CDS-intron	ENST00000398603	ENST00000322535		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
intron-intron	ENST00000498765	ENST00000534307		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
intron-intron	ENST00000498765	ENST00000528302		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
intron-intron	ENST00000498765	ENST00000322535		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	GSTP1	chr11	67354121	+	SF3B2	chr11	65836145	+
5UTR-5UTR	ENST00000378330	ENST00000425825		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
5UTR-5UTR	ENST00000378330	ENST00000359957		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
5UTR-5UTR	ENST00000301030	ENST00000425825		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
5UTR-5UTR	ENST00000301030	ENST00000359957		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
intron-5UTR	ENST00000563291	ENST00000425825		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
intron-5UTR	ENST00000563291	ENST00000359957		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
intron-5UTR	ENST00000567736	ENST00000425825		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
intron-5UTR	ENST00000567736	ENST00000359957		TCGA	RV	SKCM	TCGA-FR-A3YO-06A	ANKRD11	chr16	89484692	-	BRMS1	chr11	66109712	-
In-frame	ENST00000221249	ENST00000291503		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
Frame-shit	ENST00000221249	ENST00000357324		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
5CDS-intron	ENST00000221249	ENST00000496082		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
intron-3CDS	ENST00000545201	ENST00000291503		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
intron-3CDS	ENST00000545201	ENST00000357324		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
intron-intron	ENST00000545201	ENST00000496082		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
In-frame	ENST00000414982	ENST00000291503		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
Frame-shit	ENST00000414982	ENST00000357324		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
5CDS-intron	ENST00000414982	ENST00000496082		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
In-frame	ENST00000450331	ENST00000291503		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
Frame-shit	ENST00000450331	ENST00000357324		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
5CDS-intron	ENST00000450331	ENST00000496082		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
In-frame	ENST00000600737	ENST00000291503		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
Frame-shit	ENST00000600737	ENST00000357324		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
5CDS-intron	ENST00000600737	ENST00000496082		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
intron-3CDS	ENST00000594864	ENST00000291503		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
intron-3CDS	ENST00000594864	ENST00000357324		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
intron-intron	ENST00000594864	ENST00000496082		TCGA	RV	SKCM	TCGA-EE-A2MG-06A	PNPLA6	chr19	7607970	+	ATP13A1	chr19	19756341	-
5CDS-intron	ENST00000269576	ENST00000371917		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	KRT10	chr17	38974369	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000269576	ENST00000493140		TCGA	RV	SKCM	TCGA-EB-A1NK-01A	KRT10	chr17	38974369	-	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000537045	ENST00000329517		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
Frame-shit	ENST00000537045	ENST00000403325		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-intron	ENST00000537045	ENST00000405009		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-5UTR	ENST00000537045	ENST00000460402		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
Frame-shit	ENST00000263196	ENST00000329517		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
Frame-shit	ENST00000263196	ENST00000403325		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-intron	ENST00000263196	ENST00000405009		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-5UTR	ENST00000263196	ENST00000460402		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
In-frame	ENST00000545799	ENST00000329517		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
In-frame	ENST00000545799	ENST00000403325		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-intron	ENST00000545799	ENST00000405009		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-5UTR	ENST00000545799	ENST00000460402		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5UTR-3CDS	ENST00000473832	ENST00000329517		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5UTR-3CDS	ENST00000473832	ENST00000403325		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5UTR-intron	ENST00000473832	ENST00000405009		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5UTR-5UTR	ENST00000473832	ENST00000460402		TCGA	RV	SKCM	TCGA-FS-A1ZK-06A	DGCR2	chr22	19052361	-	GNB1L	chr22	19776483	-
5CDS-intron	ENST00000544301	ENST00000230538		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000522006		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000389463		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000424408		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000524032		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000431543		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000368638		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000453937		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000230538		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000522006		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000389463		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000424408		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000524032		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000431543		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000368638		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000453937		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000230538		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000522006		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000389463		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000424408		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000524032		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000431543		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000368638		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000453937		TCGA	RV	SKCM	TCGA-EB-A4IS-01A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
In-frame	ENST00000253925	ENST00000355303		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000253925	ENST00000398543		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000253925	ENST00000538023		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000253925	ENST00000316296		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000253925	ENST00000530676		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000253925	ENST00000531349		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000253925	ENST00000525494		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
In-frame	ENST00000389547	ENST00000355303		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000389547	ENST00000398543		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000389547	ENST00000538023		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000389547	ENST00000316296		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000389547	ENST00000530676		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000389547	ENST00000531349		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-intron	ENST00000389547	ENST00000525494		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-3CDS	ENST00000530548	ENST00000355303		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-5UTR	ENST00000530548	ENST00000398543		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-5UTR	ENST00000530548	ENST00000538023		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-5UTR	ENST00000530548	ENST00000316296		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-5UTR	ENST00000530548	ENST00000530676		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-intron	ENST00000530548	ENST00000531349		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
intron-intron	ENST00000530548	ENST00000525494		TCGA	RV	SKCM	TCGA-D3-A2J6-06A	PPFIA1	chr11	70118542	+	ANO1	chr11	69933858	+
5CDS-5UTR	ENST00000340149	ENST00000267843		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
5CDS-5UTR	ENST00000340149	ENST00000560270		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
5CDS-intron	ENST00000340149	ENST00000560704		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
5CDS-5UTR	ENST00000361507	ENST00000267843		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
5CDS-5UTR	ENST00000361507	ENST00000560270		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
5CDS-intron	ENST00000361507	ENST00000560704		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000526030	ENST00000267843		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
intron-5UTR	ENST00000526030	ENST00000560270		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
intron-intron	ENST00000526030	ENST00000560704		TCGA	RV	SKCM	TCGA-ER-A19T-01A	GAB2	chr11	77961203	-	FGF7	chr15	49716229	+
Frame-shit	ENST00000241436	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000241436	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000241436	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000241436	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000241436	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000241436	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000241436	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000241436	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000352007	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000352007	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000352007	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000352007	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000352007	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000352007	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000352007	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000352007	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-3CDS	ENST00000506928	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-intron	ENST00000506928	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-5UTR	ENST00000506928	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-5UTR	ENST00000506928	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-5UTR	ENST00000506928	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-intron	ENST00000506928	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-intron	ENST00000506928	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
3UTR-intron	ENST00000506928	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000515295	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000515295	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000515295	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000515295	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000515295	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000515295	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000515295	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000515295	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000508526	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000508526	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000508526	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000508526	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000508526	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000508526	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000508526	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000508526	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
Frame-shit	ENST00000504026	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000504026	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000504026	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000504026	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000504026	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000504026	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000504026	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-intron	ENST00000504026	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-3CDS	ENST00000380481	ENST00000256216		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-intron	ENST00000380481	ENST00000515320		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-5UTR	ENST00000380481	ENST00000510025		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-5UTR	ENST00000380481	ENST00000504811		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-5UTR	ENST00000380481	ENST00000414835		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-intron	ENST00000380481	ENST00000513628		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-intron	ENST00000380481	ENST00000509514		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5UTR-intron	ENST00000380481	ENST00000522415		TCGA	RV	SKCM	TCGA-D3-A51N-06A	POLK	chr5	74848416	+	HSD17B4	chr5	118792010	+
5CDS-5UTR	ENST00000441714	ENST00000325307		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5CDS-5UTR	ENST00000441714	ENST00000448905		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5CDS-5UTR	ENST00000345046	ENST00000325307		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5CDS-5UTR	ENST00000345046	ENST00000448905		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5CDS-5UTR	ENST00000458587	ENST00000325307		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5CDS-5UTR	ENST00000458587	ENST00000448905		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5UTR-5UTR	ENST00000468947	ENST00000325307		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
5UTR-5UTR	ENST00000468947	ENST00000448905		TCGA	RV	SKCM	TCGA-GN-A26D-06A	BCAP31	chrX	152986327	-	HMGB3	chrX	150154068	+
Frame-shit	ENST00000370794	ENST00000240079		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
Frame-shit	ENST00000370794	ENST00000545679		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
5CDS-intron	ENST00000370794	ENST00000539515		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
In-frame	ENST00000357428	ENST00000240079		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
In-frame	ENST00000357428	ENST00000545679		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
5CDS-intron	ENST00000357428	ENST00000539515		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
In-frame	ENST00000370793	ENST00000240079		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
In-frame	ENST00000370793	ENST00000545679		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
5CDS-intron	ENST00000370793	ENST00000539515		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
intron-3CDS	ENST00000370792	ENST00000240079		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
intron-3CDS	ENST00000370792	ENST00000545679		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
intron-intron	ENST00000370792	ENST00000539515		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
intron-3CDS	ENST00000528150	ENST00000240079		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
intron-3CDS	ENST00000528150	ENST00000545679		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
intron-intron	ENST00000528150	ENST00000539515		TCGA	RV	SKCM	TCGA-ER-A2ND-06A	USP33	chr1	78177432	-	CCDC53	chr12	102406970	-
Frame-shit	ENST00000280481	ENST00000215730		TCGA	RV	SKCM	TCGA-EE-A184-06A	FREM2	chr13	39271924	+	SNAP29	chr22	21241967	+
intron-3CDS	ENST00000482551	ENST00000215730		TCGA	RV	SKCM	TCGA-EE-A184-06A	FREM2	chr13	39271924	+	SNAP29	chr22	21241967	+
Frame-shit	ENST00000265361	ENST00000263433		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
Frame-shit	ENST00000265361	ENST00000376393		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
Frame-shit	ENST00000265361	ENST00000435544		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
In-frame	ENST00000544525	ENST00000263433		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
In-frame	ENST00000544525	ENST00000376393		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
In-frame	ENST00000544525	ENST00000435544		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
In-frame	ENST00000419255	ENST00000263433		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
In-frame	ENST00000419255	ENST00000376393		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
In-frame	ENST00000419255	ENST00000435544		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
intron-3CDS	ENST00000536800	ENST00000263433		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
intron-3CDS	ENST00000536800	ENST00000376393		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
intron-3CDS	ENST00000536800	ENST00000435544		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
intron-3CDS	ENST00000487621	ENST00000263433		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
intron-3CDS	ENST00000487621	ENST00000376393		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
intron-3CDS	ENST00000487621	ENST00000435544		TCGA	RV	SKCM	TCGA-D3-A1Q4-06A	SEMA3C	chr7	80418622	-	PPP1R12C	chr19	55614936	-
5CDS-intron	ENST00000442011	ENST00000408982		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000442011	ENST00000262477		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000442011	ENST00000537505		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000442011	ENST00000546142		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000442011	ENST00000341923		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000442011	ENST00000570487		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000305126	ENST00000408982		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000305126	ENST00000262477		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000305126	ENST00000537505		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000305126	ENST00000546142		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000305126	ENST00000341923		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000305126	ENST00000570487		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000508076	ENST00000408982		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000508076	ENST00000262477		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000508076	ENST00000537505		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000508076	ENST00000546142		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000508076	ENST00000341923		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5CDS-intron	ENST00000508076	ENST00000570487		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000504185	ENST00000408982		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000504185	ENST00000262477		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000504185	ENST00000537505		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000504185	ENST00000546142		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000504185	ENST00000341923		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
intron-intron	ENST00000504185	ENST00000570487		TCGA	RV	SKCM	TCGA-FS-A1ZH-06A	TGFBI	chr5	135399504	+	RABEP1	chr17	5283828	+
5UTR-3CDS	ENST00000395762	ENST00000361439		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-intron	ENST00000395762	ENST00000565384		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-3CDS	ENST00000543915	ENST00000361439		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-intron	ENST00000543915	ENST00000565384		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-3CDS	ENST00000449195	ENST00000361439		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-intron	ENST00000449195	ENST00000565384		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-3CDS	ENST00000380922	ENST00000361439		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
5UTR-intron	ENST00000380922	ENST00000565384		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
intron-3CDS	ENST00000170630	ENST00000361439		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
intron-intron	ENST00000170630	ENST00000565384		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
intron-3CDS	ENST00000565915	ENST00000361439		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
intron-intron	ENST00000565915	ENST00000565384		TCGA	RV	SKCM	TCGA-BF-A1Q0-01A	IL4R	chr16	27325341	+	NSMCE1	chr16	27246620	-
Frame-shit	ENST00000515408	ENST00000539993		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000515408	ENST00000518698		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000515408	ENST00000349492		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000515408	ENST00000523686		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000515408	ENST00000348340		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000515408	ENST00000337103		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000515408	ENST00000325233		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000389063	ENST00000539993		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
Frame-shit	ENST00000389063	ENST00000518698		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000389063	ENST00000349492		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000389063	ENST00000523686		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000389063	ENST00000348340		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000389063	ENST00000337103		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5CDS-intron	ENST00000389063	ENST00000325233		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-3CDS	ENST00000543319	ENST00000539993		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-3CDS	ENST00000543319	ENST00000518698		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000543319	ENST00000349492		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000543319	ENST00000523686		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000543319	ENST00000348340		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000543319	ENST00000337103		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
5UTR-intron	ENST00000543319	ENST00000325233		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-3CDS	ENST00000504961	ENST00000539993		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-3CDS	ENST00000504961	ENST00000518698		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000504961	ENST00000349492		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000504961	ENST00000523686		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000504961	ENST00000348340		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000504961	ENST00000337103		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
3UTR-intron	ENST00000504961	ENST00000325233		TCGA	RV	SKCM	TCGA-BF-AAP6-01A	DCP2	chr5	112312683	+	C8orf34	chr8	69728121	+
In-frame	ENST00000253925	ENST00000319023		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
In-frame	ENST00000253925	ENST00000539574		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
In-frame	ENST00000253925	ENST00000530055		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
5CDS-intron	ENST00000253925	ENST00000526039		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
In-frame	ENST00000389547	ENST00000319023		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
In-frame	ENST00000389547	ENST00000539574		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
In-frame	ENST00000389547	ENST00000530055		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
5CDS-intron	ENST00000389547	ENST00000526039		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
intron-3CDS	ENST00000530548	ENST00000319023		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
intron-3CDS	ENST00000530548	ENST00000539574		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
intron-3CDS	ENST00000530548	ENST00000530055		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
intron-intron	ENST00000530548	ENST00000526039		TCGA	RV	SKCM	TCGA-BF-A9VF-01A	PPFIA1	chr11	70208594	+	NADSYN1	chr11	71208529	+
5UTR-3CDS	ENST00000229195	ENST00000296812		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
5UTR-3CDS	ENST00000229195	ENST00000281623		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
5UTR-3CDS	ENST00000229195	ENST00000509134		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
5UTR-3CDS	ENST00000418359	ENST00000296812		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
5UTR-3CDS	ENST00000418359	ENST00000281623		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
5UTR-3CDS	ENST00000418359	ENST00000509134		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
intron-3CDS	ENST00000548230	ENST00000296812		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
intron-3CDS	ENST00000548230	ENST00000281623		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
intron-3CDS	ENST00000548230	ENST00000509134		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
intron-3CDS	ENST00000551483	ENST00000296812		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
intron-3CDS	ENST00000551483	ENST00000281623		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
intron-3CDS	ENST00000551483	ENST00000509134		TCGA	RV	SKCM	TCGA-EB-A44Q-06A	CNOT2	chr12	70637260	+	FBXO4	chr5	41929799	+
5UTR-3CDS	ENST00000270189	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000270189	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000270189	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000270189	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429089	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429089	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429089	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000429089	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000220809	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000220809	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000220809	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000220809	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000352041	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000352041	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000352041	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000352041	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000519510	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000519510	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000519510	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000519510	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429710	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429710	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429710	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000429710	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000524009	ENST00000311915		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000524009	ENST00000544871		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000524009	ENST00000398055		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000524009	ENST00000540673		TCGA	RV	SKCM	TCGA-EB-A4IQ-01A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5CDS-5UTR	ENST00000445597	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5CDS-5UTR	ENST00000445597	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5CDS-3UTR	ENST00000445597	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5CDS-5UTR	ENST00000445597	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000430092	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000430092	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-3UTR	ENST00000430092	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000430092	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-5UTR	ENST00000439375	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-5UTR	ENST00000439375	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-3UTR	ENST00000439375	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-5UTR	ENST00000439375	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000400952	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000400952	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-3UTR	ENST00000400952	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000400952	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000366849	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000366849	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-3UTR	ENST00000366849	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000366849	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000366850	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000366850	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-3UTR	ENST00000366850	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
5UTR-5UTR	ENST00000366850	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
3UTR-5UTR	ENST00000498360	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
3UTR-5UTR	ENST00000498360	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
3UTR-3UTR	ENST00000498360	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
3UTR-5UTR	ENST00000498360	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-5UTR	ENST00000366848	ENST00000272102		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-5UTR	ENST00000366848	ENST00000540651		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-3UTR	ENST00000366848	ENST00000478424		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
intron-5UTR	ENST00000366848	ENST00000541182		TCGA	RV	SKCM	TCGA-YD-A89C-06A	DNAH14	chr1	225117537	+	ARF1	chr1	228284779	+
Frame-shit	ENST00000558401	ENST00000400556		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
Frame-shit	ENST00000558401	ENST00000400555		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
5CDS-intron	ENST00000558401	ENST00000580583		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
Frame-shit	ENST00000559916	ENST00000400556		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
Frame-shit	ENST00000559916	ENST00000400555		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
5CDS-intron	ENST00000559916	ENST00000580583		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
Frame-shit	ENST00000544417	ENST00000400556		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
Frame-shit	ENST00000544417	ENST00000400555		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
5CDS-intron	ENST00000544417	ENST00000580583		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
intron-3CDS	ENST00000559220	ENST00000400556		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
intron-3CDS	ENST00000559220	ENST00000400555		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
intron-intron	ENST00000559220	ENST00000580583		TCGA	RV	SKCM	TCGA-ER-A198-06A	B2M	chr15	45003811	+	PPP4R1	chr18	9562073	-
5CDS-intron	ENST00000293618	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000293618	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000293618	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000293618	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000293618	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000293618	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000293618	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000429001	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000429001	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000429001	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000429001	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000429001	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000429001	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000429001	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000398473	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000398473	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000398473	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000398473	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000398473	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000398473	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000398473	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000518444	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000518444	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000518444	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000518444	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000518444	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000518444	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000518444	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000347328	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000347328	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000347328	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000347328	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000347328	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000347328	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000347328	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000522085	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000522085	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000522085	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000522085	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000522085	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-5UTR	ENST00000522085	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5CDS-intron	ENST00000522085	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-intron	ENST00000518561	ENST00000548589		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-intron	ENST00000518561	ENST00000552699		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-5UTR	ENST00000518561	ENST00000267115		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-5UTR	ENST00000518561	ENST00000549385		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-5UTR	ENST00000518561	ENST00000423828		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-5UTR	ENST00000518561	ENST00000395006		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
5UTR-intron	ENST00000518561	ENST00000547798		TCGA	RV	SKCM	TCGA-FS-A1Z4-06A	LARP4	chr12	50794811	+	TMBIM6	chr12	50146247	+
Frame-shit	ENST00000404397	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000404397	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000404397	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
5CDS-5UTR	ENST00000404397	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000395323	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000395323	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000395323	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
5CDS-5UTR	ENST00000395323	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
In-frame	ENST00000406087	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
In-frame	ENST00000406087	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
In-frame	ENST00000406087	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
5CDS-5UTR	ENST00000406087	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000401506	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000401506	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000401506	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
5CDS-5UTR	ENST00000401506	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
3UTR-3CDS	ENST00000467242	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
3UTR-3CDS	ENST00000467242	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
3UTR-3CDS	ENST00000467242	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
3UTR-5UTR	ENST00000467242	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000407930	ENST00000261937		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000407930	ENST00000393347		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
Frame-shit	ENST00000407930	ENST00000502649		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
5CDS-5UTR	ENST00000407930	ENST00000424276		TCGA	RV	SKCM	TCGA-D3-A3CF-06A	LBH	chr2	30457373	+	FLT4	chr5	180058778	-
5CDS-5UTR	ENST00000543086	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000543086	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000546231	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000546231	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000397203	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000397203	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000360905	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000360905	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000589028	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000589028	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000355446	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
5CDS-5UTR	ENST00000355446	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
3UTR-5UTR	ENST00000536573	ENST00000319888		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
3UTR-5UTR	ENST00000536573	ENST00000574538		TCGA	RV	SKCM	TCGA-D3-A1Q9-06A	ERC1	chr12	1346070	+	METTL4	chr18	2567653	-
intron-3CDS	ENST00000340149	ENST00000321265		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	GAB2	chr11	78128692	-	NUDC	chr1	27250580	+
intron-intron	ENST00000340149	ENST00000484772		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	GAB2	chr11	78128692	-	NUDC	chr1	27250580	+
In-frame	ENST00000361507	ENST00000321265		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	GAB2	chr11	78128692	-	NUDC	chr1	27250580	+
5CDS-intron	ENST00000361507	ENST00000484772		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	GAB2	chr11	78128692	-	NUDC	chr1	27250580	+
5UTR-3CDS	ENST00000526030	ENST00000321265		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	GAB2	chr11	78128692	-	NUDC	chr1	27250580	+
5UTR-intron	ENST00000526030	ENST00000484772		TCGA	RV	SKCM	TCGA-EB-A5SH-06A	GAB2	chr11	78128692	-	NUDC	chr1	27250580	+
In-frame	ENST00000280979	ENST00000331968		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
In-frame	ENST00000280979	ENST00000415220		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
5CDS-intron	ENST00000280979	ENST00000551644		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
In-frame	ENST00000557354	ENST00000331968		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
In-frame	ENST00000557354	ENST00000415220		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
5CDS-intron	ENST00000557354	ENST00000551644		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
In-frame	ENST00000557272	ENST00000331968		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
In-frame	ENST00000557272	ENST00000415220		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
5CDS-intron	ENST00000557272	ENST00000551644		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
intron-3CDS	ENST00000554449	ENST00000331968		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
intron-3CDS	ENST00000554449	ENST00000415220		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
intron-intron	ENST00000554449	ENST00000551644		TCGA	RV	SKCM	TCGA-EE-A181-06A	AKAP6	chr14	33069998	+	PRKD1	chr14	30095762	-
intron-3CDS	ENST00000309050	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000309050	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000309050	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000309050	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
5UTR-3CDS	ENST00000548936	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
5UTR-3CDS	ENST00000548936	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
5UTR-intron	ENST00000548936	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
5UTR-intron	ENST00000548936	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
In-frame	ENST00000548191	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
In-frame	ENST00000548191	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
5CDS-intron	ENST00000548191	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
5CDS-intron	ENST00000548191	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000546651	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000546651	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000546651	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000546651	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000549724	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000549724	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000549724	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000549724	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000551185	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000551185	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000551185	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000551185	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000546627	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000546627	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000546627	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000546627	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000547573	ENST00000552912		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-3CDS	ENST00000547573	ENST00000242591		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000547573	ENST00000361948		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
intron-intron	ENST00000547573	ENST00000549009		TCGA	RV	SKCM	TCGA-ER-A19W-06A	C12orf76	chr12	110511227	-	IFT81	chr12	110618227	+
In-frame	ENST00000376351	ENST00000376462		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000481700		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000458595		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000376454		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000376452		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000430453		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000307544		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000396446		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000396445		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
5CDS-intron	ENST00000376351	ENST00000376451		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-3CDS	ENST00000490549	ENST00000376462		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000481700		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000458595		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000376454		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000376452		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000430453		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000307544		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000396446		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000396445		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
intron-intron	ENST00000490549	ENST00000376451		TCGA	RV	SKCM	TCGA-EE-A20I-06A	GPR158	chr10	25510086	+	KIAA1217	chr10	24802188	+
Frame-shit	ENST00000441917	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000441917	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-intron	ENST00000441917	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-3UTR	ENST00000441917	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000541887	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000541887	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000541887	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-intron	ENST00000541887	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-3UTR	ENST00000541887	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000261819	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000261819	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000261819	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-intron	ENST00000261819	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-3UTR	ENST00000261819	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000535482	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-intron	ENST00000535482	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3UTR	ENST00000535482	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3CDS	ENST00000544314	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-intron	ENST00000544314	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
intron-3UTR	ENST00000544314	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000344395	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000344395	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000344395	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-intron	ENST00000344395	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-3UTR	ENST00000344395	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000449910		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000536366	ENST00000368412		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000359280		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000356955		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000355956		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
Frame-shit	ENST00000536366	ENST00000360674		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000368410		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000271836		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000368413		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000536366	ENST00000531455		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-intron	ENST00000536366	ENST00000447332		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
5CDS-3UTR	ENST00000536366	ENST00000472434		TCGA	RV	SKCM	TCGA-QB-AA9O-06A	ANAPC5	chr12	121783642	-	ADAM15	chr1	155034721	+
In-frame	ENST00000358344	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000358344	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000358344	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
In-frame	ENST00000506339	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000506339	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000506339	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
In-frame	ENST00000355836	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000355836	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000355836	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
In-frame	ENST00000514633	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000514633	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000514633	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
In-frame	ENST00000515193	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000515193	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000515193	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
In-frame	ENST00000506259	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000506259	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000506259	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
In-frame	ENST00000504898	ENST00000350028		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000504898	ENST00000493161		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000504898	ENST00000396202		TCGA	RV	SKCM	TCGA-BF-A5EQ-01A	HNRNPAB	chr5	177634226	+	SAMM50	chr22	44371935	+
5CDS-intron	ENST00000544301	ENST00000230538		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000522006		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000389463		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000424408		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000524032		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000431543		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000368638		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
5CDS-intron	ENST00000544301	ENST00000453937		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000230538		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000522006		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000389463		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000424408		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000524032		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000431543		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000368638		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
3UTR-intron	ENST00000224237	ENST00000453937		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000230538		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000522006		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000389463		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000424408		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000524032		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000431543		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000368638		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
intron-intron	ENST00000485947	ENST00000453937		TCGA	RV	SKCM	TCGA-EE-A2GT-06A	VIM	chr10	17279584	+	LAMA4	chr6	112507969	-
Frame-shit	ENST00000380615	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
Frame-shit	ENST00000380615	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
Frame-shit	ENST00000380615	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
Frame-shit	ENST00000380615	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
5CDS-intron	ENST00000380615	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
In-frame	ENST00000380617	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
In-frame	ENST00000380617	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
In-frame	ENST00000380617	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
In-frame	ENST00000380617	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
5CDS-intron	ENST00000380617	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	KATNAL1	chr13	30857753	-	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000249330	ENST00000263593		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
intron-intron	ENST00000249330	ENST00000545756		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
intron-intron	ENST00000249330	ENST00000525730		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000445482	ENST00000263593		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000445482	ENST00000545756		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000445482	ENST00000525730		TCGA	RV	SKCM	TCGA-D3-A3C1-06A	VGF	chr7	100805797	-	SIAE	chr11	124543777	-
5UTR-3CDS	ENST00000425528	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000425528	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3UTR	ENST00000425528	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000441499	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3UTR	ENST00000441499	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000356861	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000356861	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000450764	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000450764	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000592287	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000592287	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000588216	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3UTR	ENST00000588216	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000397661		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000592199		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000587760		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000585575		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000360105		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000588228		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000587260		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3CDS	ENST00000589956	ENST00000358552		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
intron-3UTR	ENST00000589956	ENST00000588680		TCGA	RV	SKCM	TCGA-DA-A1I0-06A	TNPO2	chr19	12834063	-	NFIX	chr19	13183861	+
5UTR-3CDS	ENST00000444518	ENST00000306010		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	HMGXB4	chr22	35653550	+	MGMT	chr10	131506159	+
5UTR-3UTR	ENST00000444518	ENST00000462672		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	HMGXB4	chr22	35653550	+	MGMT	chr10	131506159	+
3UTR-3CDS	ENST00000466438	ENST00000306010		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	HMGXB4	chr22	35653550	+	MGMT	chr10	131506159	+
3UTR-3UTR	ENST00000466438	ENST00000462672		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	HMGXB4	chr22	35653550	+	MGMT	chr10	131506159	+
5UTR-3CDS	ENST00000216106	ENST00000306010		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	HMGXB4	chr22	35653550	+	MGMT	chr10	131506159	+
5UTR-3UTR	ENST00000216106	ENST00000462672		TCGA	RV	SKCM	TCGA-W3-AA1R-06A	HMGXB4	chr22	35653550	+	MGMT	chr10	131506159	+
Frame-shit	ENST00000513610	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
Frame-shit	ENST00000513610	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-3UTR	ENST00000513610	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000513610	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000513610	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
Frame-shit	ENST00000507288	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
Frame-shit	ENST00000507288	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-3UTR	ENST00000507288	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000507288	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-intron	ENST00000507288	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000274203	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000274203	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3UTR	ENST00000274203	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000274203	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000274203	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000515803	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000515803	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3UTR	ENST00000515803	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000515803	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000515803	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000427430	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000427430	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3UTR	ENST00000427430	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000427430	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000427430	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000505695	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000505695	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3UTR	ENST00000505695	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000505695	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000505695	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000512061	ENST00000457752		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3CDS	ENST00000512061	ENST00000334000		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-3UTR	ENST00000512061	ENST00000505778		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000512061	ENST00000515640		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
intron-intron	ENST00000512061	ENST00000397835		TCGA	RV	SKCM	TCGA-D3-A2JC-06A	MYO10	chr5	16877718	-	C5orf38	chr5	2755143	+
5CDS-3UTR	ENST00000329251	ENST00000531709		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-3UTR	ENST00000329251	ENST00000294172		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-3UTR	ENST00000329251	ENST00000532297		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-5UTR	ENST00000329251	ENST00000533048		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-intron	ENST00000329251	ENST00000531131		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-intron	ENST00000329251	ENST00000439713		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-3UTR	ENST00000378019	ENST00000531709		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-3UTR	ENST00000378019	ENST00000294172		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-3UTR	ENST00000378019	ENST00000532297		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-5UTR	ENST00000378019	ENST00000533048		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-intron	ENST00000378019	ENST00000531131		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
5CDS-intron	ENST00000378019	ENST00000439713		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-3UTR	ENST00000532986	ENST00000531709		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-3UTR	ENST00000532986	ENST00000294172		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-3UTR	ENST00000532986	ENST00000532297		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-5UTR	ENST00000532986	ENST00000533048		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-intron	ENST00000532986	ENST00000531131		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-intron	ENST00000532986	ENST00000439713		TCGA	RV	SKCM	TCGA-EE-A20F-06A	EEF1G	chr11	62334278	-	NXF1	chr11	62563817	-
intron-3CDS	ENST00000494674	ENST00000264870		TCGA	RV	SKCM	TCGA-GN-A264-06A	PRPF4B	chr6	4021700	+	F13A1	chr6	6197559	-
In-frame	ENST00000337659	ENST00000264870		TCGA	RV	SKCM	TCGA-GN-A264-06A	PRPF4B	chr6	4021700	+	F13A1	chr6	6197559	-
intron-3CDS	ENST00000538861	ENST00000264870		TCGA	RV	SKCM	TCGA-GN-A264-06A	PRPF4B	chr6	4021700	+	F13A1	chr6	6197559	-
In-frame	ENST00000341550	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000341550	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
5CDS-intron	ENST00000341550	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000396807	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000396807	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
5CDS-intron	ENST00000396807	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000446105	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000446105	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
5CDS-intron	ENST00000446105	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000486287	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
intron-3CDS	ENST00000486287	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
intron-intron	ENST00000486287	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000444704	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000444704	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
5CDS-intron	ENST00000444704	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000423703	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000423703	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
5CDS-intron	ENST00000423703	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000412586	ENST00000299698		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
In-frame	ENST00000412586	ENST00000539547		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
5CDS-intron	ENST00000412586	ENST00000540049		TCGA	RV	SKCM	TCGA-D3-A3CC-06A	ING4	chr12	6772231	-	A2ML1	chr12	9027021	+
Frame-shit	ENST00000392455	ENST00000445281		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	CCDC50	chr3	191078948	+	OSTN	chr3	190980655	+
5CDS-intron	ENST00000392455	ENST00000339051		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	CCDC50	chr3	191078948	+	OSTN	chr3	190980655	+
Frame-shit	ENST00000392456	ENST00000445281		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	CCDC50	chr3	191078948	+	OSTN	chr3	190980655	+
5CDS-intron	ENST00000392456	ENST00000339051		TCGA	RV	SKCM	TCGA-FR-A7U8-06A	CCDC50	chr3	191078948	+	OSTN	chr3	190980655	+
Frame-shit	ENST00000558134	ENST00000333371		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000558134	ENST00000535843		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000558134	ENST00000535906		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5CDS-intron	ENST00000558134	ENST00000557358		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000560266	ENST00000333371		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000560266	ENST00000535843		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000560266	ENST00000535906		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5CDS-intron	ENST00000560266	ENST00000557358		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000268220	ENST00000333371		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000268220	ENST00000535843		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000268220	ENST00000535906		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5CDS-intron	ENST00000268220	ENST00000557358		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5UTR-3CDS	ENST00000455959	ENST00000333371		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5UTR-3CDS	ENST00000455959	ENST00000535843		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5UTR-3CDS	ENST00000455959	ENST00000535906		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
5UTR-intron	ENST00000455959	ENST00000557358		TCGA	RV	SKCM	TCGA-DA-A1HW-06A	SEC11A	chr15	85259256	-	VPS33B	chr15	91546361	-
Frame-shit	ENST00000549920	ENST00000508784		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000549920	ENST00000513320		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000549920	ENST00000379448		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000549920	ENST00000511534		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000550645	ENST00000508784		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000550645	ENST00000513320		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000550645	ENST00000379448		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000550645	ENST00000511534		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
Frame-shit	ENST00000552588	ENST00000508784		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000552588	ENST00000513320		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000552588	ENST00000379448		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-intron	ENST00000552588	ENST00000511534		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
intron-3CDS	ENST00000549273	ENST00000508784		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000549273	ENST00000513320		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000549273	ENST00000379448		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
intron-intron	ENST00000549273	ENST00000511534		TCGA	RV	SKCM	TCGA-D9-A4Z3-01A	RPL18	chr19	49118590	-	ZNF827	chr4	146859787	-
5CDS-5UTR	ENST00000320895	ENST00000375663		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000482996		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000444930		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000435657		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000487524		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000457796		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000469542		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000211402		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000462946		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000422694		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000491232		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000424974		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000425144		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320895	ENST00000474299		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-5UTR	ENST00000507807	ENST00000375663		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000482996		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000444930		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000435657		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000487524		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000457796		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000469542		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000211402		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000462946		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000422694		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000491232		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000424974		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000425144		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000507807	ENST00000474299		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-5UTR	ENST00000320927	ENST00000375663		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000482996		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000444930		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000435657		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000487524		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000457796		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000469542		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000211402		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000462946		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000422694		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000491232		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000424974		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000425144		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
5CDS-intron	ENST00000320927	ENST00000474299		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-5UTR	ENST00000506641	ENST00000375663		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000482996		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000444930		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000435657		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000487524		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000457796		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000469542		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000211402		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000462946		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000422694		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000491232		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000424974		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000425144		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
intron-intron	ENST00000506641	ENST00000474299		TCGA	RV	SKCM	TCGA-EE-A20F-06A	CLPTM1L	chr5	1338019	-	VARS	chr6	31763027	-
Frame-shit	ENST00000263966	ENST00000420517		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000263966	ENST00000470361		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000263966	ENST00000452583		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000263966	ENST00000432997		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000263966	ENST00000358316		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
3UTR-3CDS	ENST00000482333	ENST00000420517		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
3UTR-intron	ENST00000482333	ENST00000470361		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
3UTR-intron	ENST00000482333	ENST00000452583		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
3UTR-intron	ENST00000482333	ENST00000432997		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
3UTR-intron	ENST00000482333	ENST00000358316		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
Frame-shit	ENST00000496897	ENST00000420517		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000496897	ENST00000470361		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000496897	ENST00000452583		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000496897	ENST00000432997		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
5CDS-intron	ENST00000496897	ENST00000358316		TCGA	RV	SKCM	TCGA-D3-A51G-06A	USP13	chr3	179460138	+	KCNMB2	chr3	178560441	+
intron-3CDS	ENST00000196169	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000196169	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000196169	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000196169	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-intron	ENST00000196169	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000377894	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000377894	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000377894	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000377894	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-intron	ENST00000377894	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
Frame-shit	ENST00000535286	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
Frame-shit	ENST00000535286	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
Frame-shit	ENST00000535286	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
Frame-shit	ENST00000535286	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
5CDS-intron	ENST00000535286	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
5UTR-3CDS	ENST00000377881	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
5UTR-3CDS	ENST00000377881	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
5UTR-3CDS	ENST00000377881	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
5UTR-3CDS	ENST00000377881	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
5UTR-intron	ENST00000377881	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000463109	ENST00000375441		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000463109	ENST00000451881		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000463109	ENST00000326335		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-3CDS	ENST00000463109	ENST00000375440		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
intron-intron	ENST00000463109	ENST00000463426		TCGA	RV	SKCM	TCGA-D3-A5GR-06A	TDRD3	chr13	60971539	+	CUL4A	chr13	113907396	+
In-frame	ENST00000336061	ENST00000553804		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000336061	ENST00000257879		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
In-frame	ENST00000336061	ENST00000347027		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
In-frame	ENST00000336061	ENST00000452168		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000336061	ENST00000394229		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000336061	ENST00000257880		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000336061	ENST00000394230		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000336061	ENST00000555728		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
In-frame	ENST00000542104	ENST00000553804		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000542104	ENST00000257879		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
In-frame	ENST00000542104	ENST00000347027		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
In-frame	ENST00000542104	ENST00000452168		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000542104	ENST00000394229		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000542104	ENST00000257880		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000542104	ENST00000394230		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000542104	ENST00000555728		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000553804		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000257879		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000347027		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000452168		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000394229		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000257880		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000394230		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
3UTR-3CDS	ENST00000540088	ENST00000555728		TCGA	RV	SKCM	TCGA-GN-A26D-06A	RASSF3	chr12	65004523	+	ITGA7	chr12	56079072	-
Frame-shit	ENST00000181839	ENST00000223273		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000181839	ENST00000448268		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000181839	ENST00000432096		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
5CDS-3UTR	ENST00000181839	ENST00000469737		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000340829	ENST00000223273		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000340829	ENST00000448268		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
Frame-shit	ENST00000340829	ENST00000432096		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
5CDS-3UTR	ENST00000340829	ENST00000469737		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
3UTR-3CDS	ENST00000484589	ENST00000223273		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
3UTR-3CDS	ENST00000484589	ENST00000448268		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
3UTR-3CDS	ENST00000484589	ENST00000432096		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
3UTR-3UTR	ENST00000484589	ENST00000469737		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	CDK13	chr7	40041630	+	YAE1D1	chr7	39610105	+
5CDS-5UTR	ENST00000302550	ENST00000391860		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000302550	ENST00000321327		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000302550	ENST00000525115		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-intron	ENST00000302550	ENST00000530424		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000263831	ENST00000391860		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000263831	ENST00000321327		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-5UTR	ENST00000263831	ENST00000525115		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
5CDS-intron	ENST00000263831	ENST00000530424		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
3UTR-5UTR	ENST00000484738	ENST00000391860		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
3UTR-5UTR	ENST00000484738	ENST00000321327		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
3UTR-5UTR	ENST00000484738	ENST00000525115		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
3UTR-intron	ENST00000484738	ENST00000530424		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	DESI2	chr1	244816657	+	PGBD5	chr1	230493067	-
Frame-shit	ENST00000288235	ENST00000260408		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
5CDS-intron	ENST00000288235	ENST00000402627		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
5CDS-intron	ENST00000288235	ENST00000561288		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
5CDS-intron	ENST00000288235	ENST00000396140		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
5CDS-5UTR	ENST00000288235	ENST00000558733		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
intron-3CDS	ENST00000558814	ENST00000260408		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
intron-intron	ENST00000558814	ENST00000402627		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
intron-intron	ENST00000558814	ENST00000561288		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
intron-intron	ENST00000558814	ENST00000396140		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
intron-5UTR	ENST00000558814	ENST00000558733		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	MYO1E	chr15	59664697	-	ADAM10	chr15	59009926	-
Frame-shit	ENST00000397936	ENST00000563679		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000325823		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000447912		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000535621		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000455313		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000396410		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000569715		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000397936	ENST00000450288		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000563679		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000325823		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000447912		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000535621		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000455313		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000396410		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000569715		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000541094	ENST00000450288		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000563679		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000325823		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000447912		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000535621		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000455313		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000396410		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000569715		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
intron-3CDS	ENST00000398521	ENST00000450288		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000563679		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000325823		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000447912		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000535621		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000455313		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000396410		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000569715		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000398523	ENST00000450288		TCGA	LD	SKCM	TCGA-3N-A9WC-06A	STK32A	chr5	146741177	+	PDXDC1	chr16	15109986	+
Frame-shit	ENST00000407936	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
5CDS-intron	ENST00000407936	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000405557	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000405557	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000442738	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000442738	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000460648	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000460648	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000488684	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000488684	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000606538	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000606538	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000470701	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000470701	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-3CDS	ENST00000608713	ENST00000264639		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
intron-intron	ENST00000608713	ENST00000541736		TCGA	LD	SKCM	TCGA-BF-A1PU-01A	POLR2F	chr22	38382319	+	PSMD3	chr17	38140547	+
5CDS-5UTR	ENST00000262189	ENST00000495707		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
5CDS-5UTR	ENST00000262189	ENST00000359321		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
5CDS-5UTR	ENST00000355193	ENST00000495707		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
5CDS-5UTR	ENST00000355193	ENST00000359321		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
intron-5UTR	ENST00000485655	ENST00000495707		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
intron-5UTR	ENST00000485655	ENST00000359321		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
intron-5UTR	ENST00000485241	ENST00000495707		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
intron-5UTR	ENST00000485241	ENST00000359321		TCGA	LD	SKCM	TCGA-BF-A1PV-01A	KMT2C	chr7	152007051	-	XRCC2	chr7	152357867	-
5CDS-intron	ENST00000324238	ENST00000323060		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
5CDS-intron	ENST00000324238	ENST00000263275		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
5CDS-5UTR	ENST00000324238	ENST00000544371		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
5UTR-intron	ENST00000544695	ENST00000323060		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
5UTR-intron	ENST00000544695	ENST00000263275		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
5UTR-5UTR	ENST00000544695	ENST00000544371		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
intron-intron	ENST00000577725	ENST00000323060		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
intron-intron	ENST00000577725	ENST00000263275		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
intron-5UTR	ENST00000577725	ENST00000544371		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	CRLF3	chr17	29151541	-	OPA3	chr19	46057169	-
5CDS-intron	ENST00000377524	ENST00000239761		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	STAM	chr10	17702547	+	MRC1	chr10	17875674	+
5UTR-intron	ENST00000540523	ENST00000239761		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	STAM	chr10	17702547	+	MRC1	chr10	17875674	+
Frame-shit	ENST00000406644	ENST00000323544		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	TEF	chr22	41791907	+	PLEKHO2	chr15	65140792	+
In-frame	ENST00000266304	ENST00000323544		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	TEF	chr22	41791907	+	PLEKHO2	chr15	65140792	+
Frame-shit	ENST00000565468	ENST00000367362		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	TMEM178B	chr7	140912504	+	NR5A2	chr1	200080330	+
Frame-shit	ENST00000565468	ENST00000236914		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	TMEM178B	chr7	140912504	+	NR5A2	chr1	200080330	+
Frame-shit	ENST00000565468	ENST00000544748		TCGA	LD	SKCM	TCGA-BF-A1Q0-01A	TMEM178B	chr7	140912504	+	NR5A2	chr1	200080330	+
intron-3CDS	ENST00000344938	ENST00000282908		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-5UTR	ENST00000344938	ENST00000512636		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-5UTR	ENST00000344938	ENST00000510398		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-intron	ENST00000344938	ENST00000508728		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-3CDS	ENST00000344408	ENST00000282908		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-5UTR	ENST00000344408	ENST00000512636		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-5UTR	ENST00000344408	ENST00000510398		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-intron	ENST00000344408	ENST00000508728		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-3CDS	ENST00000310917	ENST00000282908		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-5UTR	ENST00000310917	ENST00000512636		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-5UTR	ENST00000310917	ENST00000510398		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
intron-intron	ENST00000310917	ENST00000508728		TCGA	LD	SKCM	TCGA-BF-A3DM-01A	EVC2	chr4	5642249	-	STK32B	chr4	5141632	+
5CDS-intron	ENST00000215882	ENST00000475548		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5CDS-intron	ENST00000215882	ENST00000358743		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5CDS-intron	ENST00000215882	ENST00000347557		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000215882	ENST00000333137		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5CDS-3UTR	ENST00000215882	ENST00000404574		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-intron	ENST00000451283	ENST00000475548		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-intron	ENST00000451283	ENST00000358743		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-intron	ENST00000451283	ENST00000347557		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-3UTR	ENST00000451283	ENST00000333137		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-3UTR	ENST00000451283	ENST00000404574		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-intron	ENST00000461267	ENST00000475548		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-intron	ENST00000461267	ENST00000358743		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-intron	ENST00000461267	ENST00000347557		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-3UTR	ENST00000461267	ENST00000333137		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5UTR-3UTR	ENST00000461267	ENST00000404574		TCGA	LD	SKCM	TCGA-BF-A5EP-01A	SLC25A1	chr22	19165646	-	SMTN	chr22	31500302	+
5CDS-5UTR	ENST00000216254	ENST00000401886		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000447208		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000398042		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000432883		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000327374		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000216254	ENST00000479679		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000401833		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000434570		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000216254	ENST00000420290		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000216254	ENST00000456048		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000401886		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000447208		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000398042		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000432883		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000327374		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-3UTR	ENST00000396512	ENST00000479679		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000401833		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000434570		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-5UTR	ENST00000396512	ENST00000420290		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
5CDS-intron	ENST00000396512	ENST00000456048		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000401886		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000447208		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000398042		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000432883		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000327374		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-3UTR	ENST00000466237	ENST00000479679		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000401833		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000434570		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-5UTR	ENST00000466237	ENST00000420290		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-intron	ENST00000466237	ENST00000456048		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ACO2	chr22	41865186	+	TANGO2	chr22	20024283	+
intron-3CDS	ENST00000355178	ENST00000256545		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-intron	ENST00000355178	ENST00000532113		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-3CDS	ENST00000282185	ENST00000256545		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-intron	ENST00000282185	ENST00000532113		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
5UTR-3CDS	ENST00000458350	ENST00000256545		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
5UTR-intron	ENST00000458350	ENST00000532113		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-3CDS	ENST00000513443	ENST00000256545		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-intron	ENST00000513443	ENST00000532113		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-3CDS	ENST00000513634	ENST00000256545		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-intron	ENST00000513634	ENST00000532113		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-3CDS	ENST00000514253	ENST00000256545		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
intron-intron	ENST00000514253	ENST00000532113		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATG10	chr5	81272146	+	EMC7	chr15	34388215	-
In-frame	ENST00000381061	ENST00000335815		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATXN10	chr22	46136418	+	ZNF354A	chr5	178154126	-
In-frame	ENST00000252934	ENST00000335815		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATXN10	chr22	46136418	+	ZNF354A	chr5	178154126	-
intron-3CDS	ENST00000498009	ENST00000335815		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATXN10	chr22	46136418	+	ZNF354A	chr5	178154126	-
intron-3CDS	ENST00000402380	ENST00000335815		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	ATXN10	chr22	46136418	+	ZNF354A	chr5	178154126	-
5CDS-intron	ENST00000402357	ENST00000322434		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
5CDS-3UTR	ENST00000402357	ENST00000522714		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
5CDS-intron	ENST00000358295	ENST00000322434		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
5CDS-3UTR	ENST00000358295	ENST00000522714		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
3UTR-intron	ENST00000473898	ENST00000322434		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
3UTR-3UTR	ENST00000473898	ENST00000522714		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
5CDS-intron	ENST00000406880	ENST00000322434		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
5CDS-3UTR	ENST00000406880	ENST00000522714		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	FAM19A5	chr22	49103656	+	ZNF354B	chr5	178314622	+
5CDS-intron	ENST00000253778	ENST00000254900		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
5CDS-intron	ENST00000253778	ENST00000230901		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
5CDS-intron	ENST00000253778	ENST00000402931		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
5CDS-intron	ENST00000253778	ENST00000411594		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
5CDS-intron	ENST00000253778	ENST00000455658		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
5CDS-intron	ENST00000253778	ENST00000515014		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
intron-intron	ENST00000520165	ENST00000254900		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
intron-intron	ENST00000520165	ENST00000230901		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
intron-intron	ENST00000520165	ENST00000402931		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
intron-intron	ENST00000520165	ENST00000411594		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
intron-intron	ENST00000520165	ENST00000455658		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
intron-intron	ENST00000520165	ENST00000515014		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	GFPT2	chr5	179780211	-	BRD8	chr5	137492956	-
Frame-shit	ENST00000380750	ENST00000348370		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380750	ENST00000434298		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380750	ENST00000559209		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380750	ENST00000557998		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380750	ENST00000561186		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
5CDS-intron	ENST00000380750	ENST00000560080		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000506542	ENST00000348370		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000506542	ENST00000434298		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000506542	ENST00000559209		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000506542	ENST00000557998		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000506542	ENST00000561186		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
5CDS-intron	ENST00000506542	ENST00000560080		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000515588	ENST00000348370		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000515588	ENST00000434298		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000515588	ENST00000559209		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000515588	ENST00000557998		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000515588	ENST00000561186		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
5CDS-intron	ENST00000515588	ENST00000560080		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380751	ENST00000348370		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380751	ENST00000434298		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380751	ENST00000559209		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380751	ENST00000557998		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000380751	ENST00000561186		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
5CDS-intron	ENST00000380751	ENST00000560080		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000503931	ENST00000348370		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000503931	ENST00000434298		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000503931	ENST00000559209		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000503931	ENST00000557998		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
Frame-shit	ENST00000503931	ENST00000561186		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
5CDS-intron	ENST00000503931	ENST00000560080		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
3UTR-3CDS	ENST00000514285	ENST00000348370		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
3UTR-3CDS	ENST00000514285	ENST00000434298		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
3UTR-3CDS	ENST00000514285	ENST00000559209		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
3UTR-3CDS	ENST00000514285	ENST00000557998		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
3UTR-3CDS	ENST00000514285	ENST00000561186		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
3UTR-intron	ENST00000514285	ENST00000560080		TCGA	LD	SKCM	TCGA-BF-A5EQ-01A	SERF1B	chr5	69322342	+	RNF111	chr15	59358963	+
5CDS-5UTR	ENST00000290949	ENST00000602377		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000290949	ENST00000268797		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000540149	ENST00000602377		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
5CDS-5UTR	ENST00000540149	ENST00000268797		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
intron-5UTR	ENST00000602876	ENST00000602377		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
intron-5UTR	ENST00000602876	ENST00000268797		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
intron-5UTR	ENST00000567694	ENST00000602377		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
intron-5UTR	ENST00000567694	ENST00000268797		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	ATP6V0D1	chr16	67514860	-	GFOD2	chr16	67719705	-
3UTR-intron	ENST00000251413	ENST00000497914		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-5UTR	ENST00000251413	ENST00000223341		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-intron	ENST00000251413	ENST00000336086		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-intron	ENST00000251413	ENST00000402306		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-intron	ENST00000251413	ENST00000443736		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-intron	ENST00000251413	ENST00000453200		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-5UTR	ENST00000251413	ENST00000447717		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
3UTR-intron	ENST00000251413	ENST00000446958		TCGA	LD	SKCM	TCGA-BF-A5ER-01A	TUBG1	chr17	40767240	+	URGCP	chr7	43965786	-
In-frame	ENST00000231498	ENST00000284268		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
In-frame	ENST00000231498	ENST00000535119		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
5CDS-5UTR	ENST00000231498	ENST00000503939		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
intron-3CDS	ENST00000381843	ENST00000284268		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
intron-3CDS	ENST00000381843	ENST00000535119		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
intron-5UTR	ENST00000381843	ENST00000503939		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
In-frame	ENST00000513532	ENST00000284268		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
In-frame	ENST00000513532	ENST00000535119		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
5CDS-5UTR	ENST00000513532	ENST00000503939		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
intron-3CDS	ENST00000502533	ENST00000284268		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
intron-3CDS	ENST00000502533	ENST00000535119		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
intron-5UTR	ENST00000502533	ENST00000503939		TCGA	LD	SKCM	TCGA-BF-A5ES-01A	NUP155	chr5	37370923	-	ANKH	chr5	14742031	-
Frame-shit	ENST00000421699	ENST00000322263		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	GOLGA2	chr9	131038172	-	TULP1	chr6	35480467	-
Frame-shit	ENST00000421699	ENST00000229771		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	GOLGA2	chr9	131038172	-	TULP1	chr6	35480467	-
Frame-shit	ENST00000609374	ENST00000322263		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	GOLGA2	chr9	131038172	-	TULP1	chr6	35480467	-
Frame-shit	ENST00000609374	ENST00000229771		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	GOLGA2	chr9	131038172	-	TULP1	chr6	35480467	-
Frame-shit	ENST00000490628	ENST00000322263		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	GOLGA2	chr9	131038172	-	TULP1	chr6	35480467	-
Frame-shit	ENST00000490628	ENST00000229771		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	GOLGA2	chr9	131038172	-	TULP1	chr6	35480467	-
intron-3UTR	ENST00000389395	ENST00000525037		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000389395	ENST00000530173		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000389395	ENST00000322157		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000389395	ENST00000544660		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000398558	ENST00000525037		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000398558	ENST00000530173		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000398558	ENST00000322157		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000398558	ENST00000544660		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000355415	ENST00000525037		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000355415	ENST00000530173		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000355415	ENST00000322157		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000355415	ENST00000544660		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000591878	ENST00000525037		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000591878	ENST00000530173		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000591878	ENST00000322157		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3UTR	ENST00000591878	ENST00000544660		TCGA	LD	SKCM	TCGA-BF-AAOX-01A	MFSD12	chr19	3538539	-	NPEPPS	chr17	45646783	+
intron-3CDS	ENST00000479974	ENST00000258733		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
intron-3CDS	ENST00000479974	ENST00000381990		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
intron-intron	ENST00000479974	ENST00000409458		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
intron-intron	ENST00000479974	ENST00000539136		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
intron-intron	ENST00000479974	ENST00000453162		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
intron-intron	ENST00000479974	ENST00000478451		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
In-frame	ENST00000466681	ENST00000258733		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
In-frame	ENST00000466681	ENST00000381990		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
5CDS-intron	ENST00000466681	ENST00000409458		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
5CDS-intron	ENST00000466681	ENST00000539136		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
5CDS-intron	ENST00000466681	ENST00000453162		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
5CDS-intron	ENST00000466681	ENST00000478451		TCGA	LD	SKCM	TCGA-BF-AAP1-01A	MALSU1	chr7	23347568	+	GPNMB	chr7	23306136	+
In-frame	ENST00000263805	ENST00000380647		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
In-frame	ENST00000263805	ENST00000262360		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
In-frame	ENST00000263805	ENST00000425824		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
5CDS-intron	ENST00000263805	ENST00000380641		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
5CDS-intron	ENST00000263805	ENST00000484374		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565380	ENST00000380647		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565380	ENST00000262360		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565380	ENST00000425824		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-intron	ENST00000565380	ENST00000380641		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-intron	ENST00000565380	ENST00000484374		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565611	ENST00000380647		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565611	ENST00000262360		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565611	ENST00000425824		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-intron	ENST00000565611	ENST00000380641		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-intron	ENST00000565611	ENST00000484374		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565660	ENST00000380647		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565660	ENST00000262360		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-3CDS	ENST00000565660	ENST00000425824		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-intron	ENST00000565660	ENST00000380641		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
intron-intron	ENST00000565660	ENST00000484374		TCGA	LD	SKCM	TCGA-BF-AAP2-01A	ZNF106	chr15	42749156	-	CNTLN	chr9	17415786	+
Frame-shit	ENST00000375784	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
Frame-shit	ENST00000375779	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
In-frame	ENST00000375780	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
In-frame	ENST00000395892	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000457485	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000423804	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000447369	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000447338	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000422167	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000438708	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000431921	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000415179	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000418285	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000423055	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000442045	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000435242	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000400052	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000383404	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000383405	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000400058	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000456863	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000434202	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000420458	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000433916	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000425464	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000423143	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000438750	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000451546	ENST00000607016		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	CLIC1	chr6	31701343	-	NUDT3	chr6	34263462	-
5CDS-5UTR	ENST00000270517	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000270517	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000588998	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000252440	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000417981	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000591104	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
5CDS-5UTR	ENST00000592312	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000586683		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000252445		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000587806		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000589171		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000591674		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000586120		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000590700		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
intron-5UTR	ENST00000591352	ENST00000591912		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	ECSIT	chr19	11623871	-	ELOF1	chr19	11665180	-
In-frame	ENST00000367669	ENST00000367922		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	RFWD2	chr1	175996708	-	DDR2	chr1	162722885	+
In-frame	ENST00000367669	ENST00000367921		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	RFWD2	chr1	175996708	-	DDR2	chr1	162722885	+
In-frame	ENST00000308769	ENST00000367922		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	RFWD2	chr1	175996708	-	DDR2	chr1	162722885	+
In-frame	ENST00000308769	ENST00000367921		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	RFWD2	chr1	175996708	-	DDR2	chr1	162722885	+
intron-3CDS	ENST00000414007	ENST00000375114		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3CDS	ENST00000414007	ENST00000246194		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3UTR	ENST00000414007	ENST00000493399		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3CDS	ENST00000419187	ENST00000375114		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3CDS	ENST00000419187	ENST00000246194		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3UTR	ENST00000419187	ENST00000493399		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3CDS	ENST00000471256	ENST00000375114		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3CDS	ENST00000471256	ENST00000246194		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
intron-3UTR	ENST00000471256	ENST00000493399		TCGA	LD	SKCM	TCGA-BF-AAP4-01A	SRGAP2	chr1	206135293	+	RALY	chr20	32664508	+
Frame-shit	ENST00000373647	ENST00000303230		TCGA	LD	SKCM	TCGA-BF-AAP6-01A	RABGAP1	chr9	125782738	+	HCN1	chr5	45267355	-
intron-3CDS	ENST00000493854	ENST00000303230		TCGA	LD	SKCM	TCGA-BF-AAP6-01A	RABGAP1	chr9	125782738	+	HCN1	chr5	45267355	-
intron-3CDS	ENST00000373643	ENST00000303230		TCGA	LD	SKCM	TCGA-BF-AAP6-01A	RABGAP1	chr9	125782738	+	HCN1	chr5	45267355	-
Frame-shit	ENST00000397517	ENST00000367846		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
Frame-shit	ENST00000397517	ENST00000271373		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
Frame-shit	ENST00000539966	ENST00000367846		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
Frame-shit	ENST00000539966	ENST00000271373		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
intron-3CDS	ENST00000481288	ENST00000367846		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
intron-3CDS	ENST00000481288	ENST00000271373		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
intron-3CDS	ENST00000376547	ENST00000367846		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
intron-3CDS	ENST00000376547	ENST00000271373		TCGA	LD	SKCM	TCGA-BF-AAP7-01A	STK24	chr13	99228999	-	MPC2	chr1	167893775	-
5CDS-5UTR	ENST00000230895	ENST00000504376		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-5UTR	ENST00000230895	ENST00000382254		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-5UTR	ENST00000230895	ENST00000522262		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-intron	ENST00000230895	ENST00000521384		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-5UTR	ENST00000432074	ENST00000504376		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-5UTR	ENST00000432074	ENST00000382254		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-5UTR	ENST00000432074	ENST00000522262		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5CDS-intron	ENST00000432074	ENST00000521384		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5UTR-5UTR	ENST00000510546	ENST00000504376		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5UTR-5UTR	ENST00000510546	ENST00000382254		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5UTR-5UTR	ENST00000510546	ENST00000522262		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
5UTR-intron	ENST00000510546	ENST00000521384		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DAP	chr5	10748287	-	CDH12	chr5	22212748	-
In-frame	ENST00000396821	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
5CDS-5UTR	ENST00000396821	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
intron-3CDS	ENST00000444597	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
intron-5UTR	ENST00000444597	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
Frame-shit	ENST00000381633	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
5CDS-5UTR	ENST00000381633	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
5UTR-3CDS	ENST00000432525	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
5UTR-5UTR	ENST00000432525	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	DDX17	chr22	38888061	-	CDH10	chr5	24498628	-
5CDS-5UTR	ENST00000282516	ENST00000503804		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
5CDS-5UTR	ENST00000282516	ENST00000274134		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
5CDS-3UTR	ENST00000282516	ENST00000510520		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
5CDS-5UTR	ENST00000448238	ENST00000503804		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
5CDS-5UTR	ENST00000448238	ENST00000274134		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
5CDS-3UTR	ENST00000448238	ENST00000510520		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
3UTR-5UTR	ENST00000504430	ENST00000503804		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
3UTR-5UTR	ENST00000504430	ENST00000274134		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
3UTR-3UTR	ENST00000504430	ENST00000510520		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	NIPBL	chr5	36976504	+	ROPN1L	chr5	10442239	+
In-frame	ENST00000255882	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
5CDS-intron	ENST00000255882	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
Frame-shit	ENST00000572273	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
5CDS-intron	ENST00000572273	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
intron-3CDS	ENST00000414196	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
intron-intron	ENST00000414196	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
5UTR-3CDS	ENST00000466162	ENST00000264463		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
5UTR-intron	ENST00000466162	ENST00000502921		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21147481	-	CDH10	chr5	24537783	-
Frame-shit	ENST00000255882	ENST00000536101		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
Frame-shit	ENST00000255882	ENST00000335473		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
Frame-shit	ENST00000255882	ENST00000407587		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
5CDS-intron	ENST00000255882	ENST00000536204		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
Frame-shit	ENST00000572273	ENST00000536101		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
Frame-shit	ENST00000572273	ENST00000335473		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
Frame-shit	ENST00000572273	ENST00000407587		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
5CDS-intron	ENST00000572273	ENST00000536204		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
intron-3CDS	ENST00000414196	ENST00000536101		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
intron-3CDS	ENST00000414196	ENST00000335473		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
intron-3CDS	ENST00000414196	ENST00000407587		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
intron-intron	ENST00000414196	ENST00000536204		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
5UTR-3CDS	ENST00000466162	ENST00000536101		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
5UTR-3CDS	ENST00000466162	ENST00000335473		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
5UTR-3CDS	ENST00000466162	ENST00000407587		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
5UTR-intron	ENST00000466162	ENST00000536204		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	PI4KA	chr22	21115592	-	MYO18B	chr22	26177701	+
In-frame	ENST00000414786	ENST00000215832		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000414786	ENST00000398822		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000414786	ENST00000544786		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
5CDS-intron	ENST00000414786	ENST00000491588		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000445220	ENST00000215832		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000445220	ENST00000398822		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000445220	ENST00000544786		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
5CDS-intron	ENST00000445220	ENST00000491588		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000262795	ENST00000215832		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000262795	ENST00000398822		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
In-frame	ENST00000262795	ENST00000544786		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
5CDS-intron	ENST00000262795	ENST00000491588		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	SHANK3	chr22	51115121	+	MAPK1	chr22	22153417	-
Frame-shit	ENST00000263202	ENST00000283426		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	UFD1L	chr22	19466606	-	PLEKHG4B	chr5	181629	+
Frame-shit	ENST00000360834	ENST00000283426		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	UFD1L	chr22	19466606	-	PLEKHG4B	chr5	181629	+
Frame-shit	ENST00000399523	ENST00000283426		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	UFD1L	chr22	19466606	-	PLEKHG4B	chr5	181629	+
intron-3CDS	ENST00000484101	ENST00000283426		TCGA	LD	SKCM	TCGA-D3-A1Q3-06A	UFD1L	chr22	19466606	-	PLEKHG4B	chr5	181629	+
intron-3CDS	ENST00000454341	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000454341	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000454341	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000284694	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000284694	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000284694	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
Frame-shit	ENST00000544758	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
Frame-shit	ENST00000544758	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
5CDS-intron	ENST00000544758	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000356858	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000356858	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000356858	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000480379	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000480379	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000480379	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000368674	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000368674	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000368674	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000392694	ENST00000368679		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-3CDS	ENST00000392694	ENST00000368676		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
intron-intron	ENST00000392694	ENST00000467145		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	C10orf90	chr10	128358810	-	ADAM12	chr10	128019078	-
5UTR-3CDS	ENST00000396113	ENST00000360375		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
5UTR-3CDS	ENST00000396113	ENST00000414626		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
intron-3CDS	ENST00000286687	ENST00000360375		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
intron-3CDS	ENST00000286687	ENST00000414626		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
5UTR-3CDS	ENST00000396111	ENST00000360375		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
5UTR-3CDS	ENST00000396111	ENST00000414626		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
3UTR-3CDS	ENST00000521840	ENST00000360375		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
3UTR-3CDS	ENST00000521840	ENST00000414626		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
Frame-shit	ENST00000542894	ENST00000360375		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
Frame-shit	ENST00000542894	ENST00000414626		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
intron-3CDS	ENST00000396124	ENST00000360375		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
intron-3CDS	ENST00000396124	ENST00000414626		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	NDUFAF6	chr8	95993201	+	LRRCC1	chr8	86042154	+
5CDS-intron	ENST00000263433	ENST00000344063		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000431533		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000428193		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000558815		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000560583		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000560055		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000559463		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000558131		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000558752		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000263433	ENST00000458349		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000344063		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000431533		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000428193		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000558815		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000560583		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000560055		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000559463		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000558131		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000558752		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000376393	ENST00000458349		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000344063		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000431533		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000428193		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000558815		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000560583		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000560055		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000559463		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000558131		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000558752		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-intron	ENST00000435544	ENST00000458349		TCGA	LD	SKCM	TCGA-D3-A1Q4-06A	PPP1R12C	chr19	55623835	-	RPL28	chr19	55914311	+
5CDS-5UTR	ENST00000380338	ENST00000434457		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5CDS-5UTR	ENST00000380338	ENST00000602925		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5CDS-intron	ENST00000380338	ENST00000380432		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5UTR-5UTR	ENST00000355930	ENST00000434457		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5UTR-5UTR	ENST00000355930	ENST00000602925		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5UTR-intron	ENST00000355930	ENST00000380432		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5CDS-5UTR	ENST00000429426	ENST00000434457		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5CDS-5UTR	ENST00000429426	ENST00000602925		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5CDS-intron	ENST00000429426	ENST00000380432		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5UTR-5UTR	ENST00000475957	ENST00000434457		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5UTR-5UTR	ENST00000475957	ENST00000602925		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5UTR-intron	ENST00000475957	ENST00000380432		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
intron-5UTR	ENST00000380321	ENST00000434457		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
intron-5UTR	ENST00000380321	ENST00000602925		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
intron-intron	ENST00000380321	ENST00000380432		TCGA	LD	SKCM	TCGA-D3-A1Q6-06A	MLLT3	chr9	20620653	-	DENND4C	chr9	19276156	+
5CDS-intron	ENST00000358372	ENST00000252660		TCGA	LD	SKCM	TCGA-D3-A1Q7-06A	WTAP	chr6	160160077	+	MAS1	chr6	160327952	+
5CDS-intron	ENST00000337387	ENST00000252660		TCGA	LD	SKCM	TCGA-D3-A1Q7-06A	WTAP	chr6	160160077	+	MAS1	chr6	160327952	+
intron-intron	ENST00000494513	ENST00000252660		TCGA	LD	SKCM	TCGA-D3-A1Q7-06A	WTAP	chr6	160160077	+	MAS1	chr6	160327952	+
Frame-shit	ENST00000382518	ENST00000337836		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
Frame-shit	ENST00000382518	ENST00000263413		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
5CDS-intron	ENST00000382518	ENST00000475349		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
Frame-shit	ENST00000009180	ENST00000337836		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
Frame-shit	ENST00000009180	ENST00000263413		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
5CDS-intron	ENST00000009180	ENST00000475349		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
5UTR-3CDS	ENST00000382515	ENST00000337836		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
5UTR-3CDS	ENST00000382515	ENST00000263413		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
5UTR-intron	ENST00000382515	ENST00000475349		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
3UTR-3CDS	ENST00000481267	ENST00000337836		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
3UTR-3CDS	ENST00000481267	ENST00000263413		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
3UTR-intron	ENST00000481267	ENST00000475349		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	CD9	chr12	6334700	+	C6	chr5	41186310	-
5CDS-intron	ENST00000374980	ENST00000371741		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	EIF2S2	chr20	32681481	-	KCNB1	chr20	47927336	-
5UTR-3CDS	ENST00000527524	ENST00000309295		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
5UTR-intron	ENST00000527524	ENST00000529596		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
5UTR-intron	ENST00000527524	ENST00000533364		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
intron-3CDS	ENST00000438375	ENST00000309295		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
intron-intron	ENST00000438375	ENST00000529596		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
intron-intron	ENST00000438375	ENST00000533364		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
intron-3CDS	ENST00000527130	ENST00000309295		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
intron-intron	ENST00000527130	ENST00000529596		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
intron-intron	ENST00000527130	ENST00000533364		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	GRIK4	chr11	120382596	+	EHBP1L1	chr11	65357222	+
Frame-shit	ENST00000253363	ENST00000540582		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000253363	ENST00000374491		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000253363	ENST00000374492		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000253363	ENST00000541621		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5CDS-5UTR	ENST00000253363	ENST00000542871		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000361162	ENST00000540582		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000361162	ENST00000374491		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000361162	ENST00000374492		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000361162	ENST00000541621		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5CDS-5UTR	ENST00000361162	ENST00000542871		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000528062	ENST00000540582		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000528062	ENST00000374491		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000528062	ENST00000374492		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000528062	ENST00000541621		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5CDS-5UTR	ENST00000528062	ENST00000542871		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5UTR-3CDS	ENST00000407261	ENST00000540582		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5UTR-3CDS	ENST00000407261	ENST00000374491		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5UTR-3CDS	ENST00000407261	ENST00000374492		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5UTR-3CDS	ENST00000407261	ENST00000541621		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5UTR-5UTR	ENST00000407261	ENST00000542871		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000397370	ENST00000540582		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000397370	ENST00000374491		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000397370	ENST00000374492		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
Frame-shit	ENST00000397370	ENST00000541621		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
5CDS-5UTR	ENST00000397370	ENST00000542871		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
intron-3CDS	ENST00000463098	ENST00000540582		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
intron-3CDS	ENST00000463098	ENST00000374491		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
intron-3CDS	ENST00000463098	ENST00000374492		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
intron-3CDS	ENST00000463098	ENST00000541621		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
intron-5UTR	ENST00000463098	ENST00000542871		TCGA	LD	SKCM	TCGA-D3-A1Q9-06A	RBM39	chr20	34326890	-	EDEM2	chr20	33719586	-
intron-3CDS	ENST00000391813	ENST00000390560		TCGA	LD	SKCM	TCGA-D3-A1QB-06A	SHANK1	chr19	51171268	-	IGHJ6	chr14	106329449	-
intron-3CDS	ENST00000293441	ENST00000390560		TCGA	LD	SKCM	TCGA-D3-A1QB-06A	SHANK1	chr19	51171268	-	IGHJ6	chr14	106329449	-
intron-3CDS	ENST00000391814	ENST00000390560		TCGA	LD	SKCM	TCGA-D3-A1QB-06A	SHANK1	chr19	51171268	-	IGHJ6	chr14	106329449	-
intron-3CDS	ENST00000359082	ENST00000390560		TCGA	LD	SKCM	TCGA-D3-A1QB-06A	SHANK1	chr19	51171268	-	IGHJ6	chr14	106329449	-
intron-3CDS	ENST00000483981	ENST00000390560		TCGA	LD	SKCM	TCGA-D3-A1QB-06A	SHANK1	chr19	51171268	-	IGHJ6	chr14	106329449	-
intron-5UTR	ENST00000370132	ENST00000343253		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370132	ENST00000401026		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370132	ENST00000338949		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370132	ENST00000334652		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370132	ENST00000557479		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370132	ENST00000421014		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-5UTR	ENST00000370131	ENST00000343253		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370131	ENST00000401026		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370131	ENST00000338949		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370131	ENST00000334652		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370131	ENST00000557479		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
intron-intron	ENST00000370131	ENST00000421014		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	DBT	chr1	100684200	-	CCDC18	chr1	93645611	+
5CDS-5UTR	ENST00000258886	ENST00000460742		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
5CDS-5UTR	ENST00000258886	ENST00000259983		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
5CDS-5UTR	ENST00000258886	ENST00000426700		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
5CDS-intron	ENST00000258886	ENST00000467832		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
5CDS-intron	ENST00000258886	ENST00000379586		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
5CDS-5UTR	ENST00000258886	ENST00000503680		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000560440	ENST00000460742		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000560440	ENST00000259983		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000560440	ENST00000426700		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-intron	ENST00000560440	ENST00000467832		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-intron	ENST00000560440	ENST00000379586		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000560440	ENST00000503680		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000559427	ENST00000460742		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000559427	ENST00000259983		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000559427	ENST00000426700		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-intron	ENST00000559427	ENST00000467832		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-intron	ENST00000559427	ENST00000379586		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
intron-5UTR	ENST00000559427	ENST00000503680		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	IREB2	chr15	78786606	+	C6orf52	chr6	10687397	-
5CDS-intron	ENST00000553066	ENST00000553116		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000553066	ENST00000360299		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000553066	ENST00000448789		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000550443	ENST00000553116		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000550443	ENST00000360299		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000550443	ENST00000448789		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000207437	ENST00000553116		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000207437	ENST00000360299		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5CDS-intron	ENST00000207437	ENST00000448789		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
intron-intron	ENST00000552568	ENST00000553116		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
intron-intron	ENST00000552568	ENST00000360299		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
intron-intron	ENST00000552568	ENST00000448789		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
3UTR-intron	ENST00000550152	ENST00000553116		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
3UTR-intron	ENST00000550152	ENST00000360299		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
3UTR-intron	ENST00000550152	ENST00000448789		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	MYL6B	chr12	56549376	+	RAB5B	chr12	56373156	+
5UTR-intron	ENST00000261749	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000261749	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000561060	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000561060	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000559157	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000559157	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000558494	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-intron	ENST00000558494	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000559835	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000559835	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000559775	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000559775	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000558688	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000558688	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000558087	ENST00000490577		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
intron-intron	ENST00000558087	ENST00000378180		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80352151	+	DLEU1	chr13	50657278	+
5UTR-3UTR	ENST00000261749	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000261749	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000261749	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000261749	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000261749	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000261749	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-3UTR	ENST00000561060	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000561060	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000561060	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000561060	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000561060	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000561060	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-3UTR	ENST00000559157	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559157	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559157	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559157	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559157	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559157	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-3UTR	ENST00000558494	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558494	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558494	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558494	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558494	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558494	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-3UTR	ENST00000559835	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559835	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559835	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559835	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559835	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000559835	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-3UTR	ENST00000559775	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000559775	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000559775	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000559775	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000559775	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5UTR-intron	ENST00000559775	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-3UTR	ENST00000558688	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558688	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558688	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558688	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558688	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558688	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-3UTR	ENST00000558087	ENST00000478111		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558087	ENST00000420995		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558087	ENST00000378182		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558087	ENST00000356017		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558087	ENST00000457662		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
intron-intron	ENST00000558087	ENST00000298772		TCGA	LD	SKCM	TCGA-D3-A2J6-06A	ZFAND6	chr15	80390920	+	TRIM13	chr13	50594350	+
5CDS-5UTR	ENST00000334256	ENST00000465804		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
5CDS-5UTR	ENST00000334256	ENST00000360632		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
5CDS-5UTR	ENST00000334256	ENST00000467467		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
5CDS-intron	ENST00000334256	ENST00000474080		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
intron-5UTR	ENST00000469804	ENST00000465804		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
intron-5UTR	ENST00000469804	ENST00000360632		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
intron-5UTR	ENST00000469804	ENST00000467467		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
intron-intron	ENST00000469804	ENST00000474080		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	KPNA4	chr3	160233240	-	WWTR1	chr3	149375096	-
intron-3CDS	ENST00000474034	ENST00000415149		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-3CDS	ENST00000474034	ENST00000402543		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-3CDS	ENST00000474034	ENST00000325805		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-intron	ENST00000474034	ENST00000416476		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-intron	ENST00000474034	ENST00000406780		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-intron	ENST00000474034	ENST00000473542		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-3CDS	ENST00000282928	ENST00000415149		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-3CDS	ENST00000282928	ENST00000402543		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-3CDS	ENST00000282928	ENST00000325805		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-intron	ENST00000282928	ENST00000416476		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-intron	ENST00000282928	ENST00000406780		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
intron-intron	ENST00000282928	ENST00000473542		TCGA	LD	SKCM	TCGA-D3-A2J8-06A	ZIC1	chr3	147111729	+	BBX	chr3	107491475	+
3UTR-3CDS	ENST00000435070	ENST00000498603		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-3CDS	ENST00000435070	ENST00000223641		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-intron	ENST00000435070	ENST00000481573		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-3CDS	ENST00000456847	ENST00000498603		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-3CDS	ENST00000456847	ENST00000223641		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-intron	ENST00000456847	ENST00000481573		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-3CDS	ENST00000266679	ENST00000498603		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-3CDS	ENST00000266679	ENST00000223641		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
3UTR-intron	ENST00000266679	ENST00000481573		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
intron-3CDS	ENST00000550987	ENST00000498603		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
intron-3CDS	ENST00000550987	ENST00000223641		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
intron-intron	ENST00000550987	ENST00000481573		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
Frame-shit	ENST00000551516	ENST00000498603		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
Frame-shit	ENST00000551516	ENST00000223641		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
5CDS-intron	ENST00000551516	ENST00000481573		TCGA	LD	SKCM	TCGA-D3-A2J9-06A	CPSF6	chr12	69656342	+	SEC61B	chr9	101992619	+
5UTR-3CDS	ENST00000295966	ENST00000320954		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000295966	ENST00000449224		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-intron	ENST00000295966	ENST00000485310		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
intron-3CDS	ENST00000482387	ENST00000320954		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
intron-3CDS	ENST00000482387	ENST00000449224		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
intron-intron	ENST00000482387	ENST00000485310		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000472469	ENST00000320954		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000472469	ENST00000449224		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-intron	ENST00000472469	ENST00000485310		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000491845	ENST00000320954		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000491845	ENST00000449224		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-intron	ENST00000491845	ENST00000485310		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000478363	ENST00000320954		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-3CDS	ENST00000478363	ENST00000449224		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
5UTR-intron	ENST00000478363	ENST00000485310		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	C3orf67	chr3	59025283	-	CRTAP	chr3	33183887	+
Frame-shit	ENST00000264554	ENST00000371953		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	SHC2	chr19	438718	-	PTEN	chr10	89653782	+
5CDS-intron	ENST00000264554	ENST00000472832		TCGA	LD	SKCM	TCGA-D3-A2JA-06A	SHC2	chr19	438718	-	PTEN	chr10	89653782	+
5CDS-intron	ENST00000336898	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000336898	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000336898	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000336898	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000336898	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000336898	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000376282	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000376282	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000376282	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000376282	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000376282	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000376282	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000529095	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000529095	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000529095	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000529095	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000529095	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000529095	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000526177	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000526177	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000526177	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000526177	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000526177	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000526177	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533784	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533784	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533784	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533784	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533784	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533784	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000529721	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000529721	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000529721	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000529721	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000529721	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000529721	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533805	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533805	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533805	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533805	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533805	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
intron-intron	ENST00000533805	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000443276	ENST00000532485		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000443276	ENST00000530182		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000443276	ENST00000526597		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000443276	ENST00000533873		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000443276	ENST00000538157		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-intron	ENST00000443276	ENST00000544113		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	GDPD5	chr11	75167802	-	ACER3	chr11	76722374	+
5CDS-5UTR	ENST00000308488	ENST00000544374		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
5CDS-intron	ENST00000308488	ENST00000302981		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
5CDS-5UTR	ENST00000360355	ENST00000544374		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
5CDS-intron	ENST00000360355	ENST00000302981		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
5CDS-5UTR	ENST00000480887	ENST00000544374		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
5CDS-intron	ENST00000480887	ENST00000302981		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
intron-5UTR	ENST00000530604	ENST00000544374		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
intron-intron	ENST00000530604	ENST00000302981		TCGA	LD	SKCM	TCGA-D3-A2JB-06A	RSF1	chr11	77409532	-	OR5AP2	chr11	56409923	-
intron-5UTR	ENST00000578872	ENST00000543252		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000578872	ENST00000344138		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000578872	ENST00000540310		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000578872	ENST00000478445		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000578872	ENST00000544756		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
intron-intron	ENST00000578872	ENST00000399090		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
intron-5UTR	ENST00000578872	ENST00000407075		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	MIR4458HG	chr5	8457879	+	GRAP2	chr22	40343097	+
In-frame	ENST00000263857	ENST00000216254		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
In-frame	ENST00000263857	ENST00000396512		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
5CDS-intron	ENST00000263857	ENST00000466237		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
In-frame	ENST00000409681	ENST00000216254		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
In-frame	ENST00000409681	ENST00000396512		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
5CDS-intron	ENST00000409681	ENST00000466237		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
intron-3CDS	ENST00000483538	ENST00000216254		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
intron-3CDS	ENST00000483538	ENST00000396512		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
intron-intron	ENST00000483538	ENST00000466237		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	POLR1A	chr2	86259395	-	ACO2	chr22	41895730	+
5CDS-intron	ENST00000424107	ENST00000396299		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000424107	ENST00000357727		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000424107	ENST00000396300		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000424107	ENST00000409603		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000424107	ENST00000396298		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000424107	ENST00000482692		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000558583	ENST00000396299		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000558583	ENST00000357727		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000558583	ENST00000396300		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000558583	ENST00000409603		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000558583	ENST00000396298		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000558583	ENST00000482692		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000558318	ENST00000396299		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000558318	ENST00000357727		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000558318	ENST00000396300		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000558318	ENST00000409603		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000558318	ENST00000396298		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000558318	ENST00000482692		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000423335	ENST00000396299		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000423335	ENST00000357727		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000423335	ENST00000396300		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000423335	ENST00000409603		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000423335	ENST00000396298		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000423335	ENST00000482692		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000482916	ENST00000396299		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000482916	ENST00000357727		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000482916	ENST00000396300		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000482916	ENST00000409603		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000482916	ENST00000396298		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-intron	ENST00000482916	ENST00000482692		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	SHISA9	chr16	13010672	+	CREB5	chr7	28527793	+
intron-3CDS	ENST00000476901	ENST00000216218		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	TRMU	chr22	46748227	+	ST13	chr22	41231891	-
In-frame	ENST00000290846	ENST00000216218		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	TRMU	chr22	46748227	+	ST13	chr22	41231891	-
In-frame	ENST00000381019	ENST00000216218		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	TRMU	chr22	46748227	+	ST13	chr22	41231891	-
3UTR-3CDS	ENST00000424260	ENST00000216218		TCGA	LD	SKCM	TCGA-D3-A2JC-06A	TRMU	chr22	46748227	+	ST13	chr22	41231891	-
5CDS-intron	ENST00000342085	ENST00000569256		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000342085	ENST00000248098		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000342085	ENST00000562684		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000342085	ENST00000561516		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000342085	ENST00000382711		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000342085	ENST00000569765		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000342085	ENST00000382710		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000441549	ENST00000569256		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000441549	ENST00000248098		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000441549	ENST00000562684		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000441549	ENST00000561516		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000441549	ENST00000382711		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000441549	ENST00000569765		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000441549	ENST00000382710		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000268673	ENST00000569256		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000268673	ENST00000248098		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000268673	ENST00000562684		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000268673	ENST00000561516		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000268673	ENST00000382711		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000268673	ENST00000569765		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000268673	ENST00000382710		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000354836	ENST00000569256		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000354836	ENST00000248098		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000354836	ENST00000562684		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000354836	ENST00000561516		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000354836	ENST00000382711		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000354836	ENST00000569765		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000354836	ENST00000382710		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000389224	ENST00000569256		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000389224	ENST00000248098		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000389224	ENST00000562684		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-intron	ENST00000389224	ENST00000561516		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000389224	ENST00000382711		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000389224	ENST00000569765		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000389224	ENST00000382710		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000471311	ENST00000569256		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000471311	ENST00000248098		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000471311	ENST00000562684		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-intron	ENST00000471311	ENST00000561516		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000471311	ENST00000382711		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000471311	ENST00000569765		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000471311	ENST00000382710		TCGA	LD	SKCM	TCGA-D3-A2JD-06A	PDPK1	chr16	2627501	+	HN1L	chr16	1735440	+
In-frame	ENST00000297423	ENST00000523111		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000521346		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000517630		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000297423	ENST00000520809		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
In-frame	ENST00000518074	ENST00000523111		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000521346		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000517630		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000518074	ENST00000520809		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
In-frame	ENST00000541342	ENST00000523111		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000521346		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000517630		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000541342	ENST00000520809		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
3UTR-3CDS	ENST00000521214	ENST00000523111		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000521346		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000517630		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
3UTR-5UTR	ENST00000521214	ENST00000520809		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
In-frame	ENST00000517693	ENST00000523111		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000517693	ENST00000521346		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000517693	ENST00000517630		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
5CDS-5UTR	ENST00000517693	ENST00000520809		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
intron-3CDS	ENST00000518060	ENST00000523111		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000521346		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000517630		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000518060	ENST00000520809		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	SPIDR	chr8	48626203	+	UBE2V2	chr8	48955593	+
intron-5UTR	ENST00000587340	ENST00000594268		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
intron-5UTR	ENST00000587340	ENST00000221498		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000254165	ENST00000594268		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
5CDS-5UTR	ENST00000254165	ENST00000221498		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
5UTR-5UTR	ENST00000587492	ENST00000594268		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
5UTR-5UTR	ENST00000587492	ENST00000221498		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
intron-5UTR	ENST00000391713	ENST00000594268		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
intron-5UTR	ENST00000391713	ENST00000221498		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
intron-5UTR	ENST00000592355	ENST00000594268		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
intron-5UTR	ENST00000592355	ENST00000221498		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
5UTR-5UTR	ENST00000591078	ENST00000594268		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
5UTR-5UTR	ENST00000591078	ENST00000221498		TCGA	LD	SKCM	TCGA-D3-A2JE-06A	ZSCAN5A	chr19	56824652	-	DKKL1	chr19	49877974	+
Frame-shit	ENST00000352241	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000352241	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000352241	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000352241	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000448226	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000448226	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000448226	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
Frame-shit	ENST00000448226	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000472437	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000472437	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000472437	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000472437	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000328528	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000328528	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000328528	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000328528	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314589	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314589	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314589	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314589	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394355	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394355	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394355	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394355	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314557	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314557	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314557	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000314557	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394351	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394351	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394351	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394351	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000531774	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000531774	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000531774	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000531774	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394348	ENST00000295901		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394348	ENST00000492933		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394348	ENST00000394431		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
intron-3CDS	ENST00000394348	ENST00000482510		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	MITF	chr3	69788852	+	PSMD6	chr3	64008199	-
In-frame	ENST00000361574	ENST00000262467		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000361574	ENST00000345221		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000361574	ENST00000269280		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000361574	ENST00000572272		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000361574	ENST00000354411		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000361574	ENST00000577119		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000361574	ENST00000571307		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
In-frame	ENST00000587975	ENST00000262467		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000587975	ENST00000345221		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000587975	ENST00000269280		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000587975	ENST00000572272		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000587975	ENST00000354411		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000587975	ENST00000577119		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
5CDS-intron	ENST00000587975	ENST00000571307		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	R3HDM4	chr19	900829	-	NLRP1	chr17	5405192	-
In-frame	ENST00000421564	ENST00000400532		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000421564	ENST00000480456		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000421564	ENST00000312957		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000421564	ENST00000425221		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
5CDS-intron	ENST00000421564	ENST00000477351		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000331758	ENST00000400532		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000331758	ENST00000480456		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000331758	ENST00000312957		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000331758	ENST00000425221		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
5CDS-intron	ENST00000331758	ENST00000477351		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000370848	ENST00000400532		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000370848	ENST00000480456		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000370848	ENST00000312957		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
In-frame	ENST00000370848	ENST00000425221		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
5CDS-intron	ENST00000370848	ENST00000477351		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
intron-3CDS	ENST00000491916	ENST00000400532		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
intron-3CDS	ENST00000491916	ENST00000480456		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
intron-3CDS	ENST00000491916	ENST00000312957		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
intron-3CDS	ENST00000491916	ENST00000425221		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
intron-intron	ENST00000491916	ENST00000477351		TCGA	LD	SKCM	TCGA-D3-A2JG-06A	SS18L1	chr20	60740570	+	JAM2	chr21	27056195	+
5CDS-5UTR	ENST00000253925	ENST00000491507		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-intron	ENST00000253925	ENST00000477374		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-intron	ENST00000253925	ENST00000478296		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-intron	ENST00000253925	ENST00000422325		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-5UTR	ENST00000253925	ENST00000400845		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-5UTR	ENST00000389547	ENST00000491507		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-intron	ENST00000389547	ENST00000477374		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-intron	ENST00000389547	ENST00000478296		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-intron	ENST00000389547	ENST00000422325		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
5CDS-5UTR	ENST00000389547	ENST00000400845		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
intron-5UTR	ENST00000530548	ENST00000491507		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
intron-intron	ENST00000530548	ENST00000477374		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
intron-intron	ENST00000530548	ENST00000478296		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
intron-intron	ENST00000530548	ENST00000422325		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
intron-5UTR	ENST00000530548	ENST00000400845		TCGA	LD	SKCM	TCGA-D3-A2JO-06A	PPFIA1	chr11	70118542	+	ZNF717	chr3	75791016	-
Frame-shit	ENST00000261716	ENST00000321437		TCGA	LD	SKCM	TCGA-D3-A3BZ-06A	TAOK1	chr17	27838010	+	RAB8B	chr15	63536955	+
Frame-shit	ENST00000261716	ENST00000448330		TCGA	LD	SKCM	TCGA-D3-A3BZ-06A	TAOK1	chr17	27838010	+	RAB8B	chr15	63536955	+
Frame-shit	ENST00000536202	ENST00000321437		TCGA	LD	SKCM	TCGA-D3-A3BZ-06A	TAOK1	chr17	27838010	+	RAB8B	chr15	63536955	+
Frame-shit	ENST00000536202	ENST00000448330		TCGA	LD	SKCM	TCGA-D3-A3BZ-06A	TAOK1	chr17	27838010	+	RAB8B	chr15	63536955	+
In-frame	ENST00000548898	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000548898	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000548898	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000552067	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000552067	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000552067	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000420846	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000420846	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000420846	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000548160	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000548160	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000548160	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000546939	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000546939	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000546939	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000552692	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000552692	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000552692	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000549117	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000549117	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000549117	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000257857	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000257857	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000257857	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000552754	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
In-frame	ENST00000552754	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000552754	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000550776	ENST00000267103		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
Frame-shit	ENST00000550776	ENST00000548632		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5CDS-5UTR	ENST00000550776	ENST00000549488		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CD63	chr12	56120484	-	C12orf10	chr12	53693934	+
5UTR-3CDS	ENST00000541284	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000541284	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3CDS	ENST00000451834	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000451834	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3CDS	ENST00000423368	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000423368	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3CDS	ENST00000361528	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000361528	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3CDS	ENST00000356162	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000356162	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3CDS	ENST00000428680	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000428680	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3CDS	ENST00000315544	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
5UTR-3UTR	ENST00000315544	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000473470	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000473470	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
intron-3CDS	ENST00000414802	ENST00000359579		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
intron-3UTR	ENST00000414802	ENST00000475559		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	CNOT4	chr7	135194637	-	AKR1B10	chr7	134215395	+
Frame-shit	ENST00000262189	ENST00000424859		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000262189	ENST00000535008		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000262189	ENST00000401970		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000262189	ENST00000543266		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
Frame-shit	ENST00000355193	ENST00000424859		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000355193	ENST00000535008		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000355193	ENST00000401970		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000355193	ENST00000543266		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-3CDS	ENST00000485655	ENST00000424859		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485655	ENST00000535008		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485655	ENST00000401970		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485655	ENST00000543266		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-3CDS	ENST00000485241	ENST00000424859		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485241	ENST00000535008		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485241	ENST00000401970		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
intron-intron	ENST00000485241	ENST00000543266		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	KMT2C	chr7	152132711	-	LHFPL3	chr7	104377122	+
5CDS-intron	ENST00000535977	ENST00000599680		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000535977	ENST00000309877		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000535977	ENST00000600911		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000596822		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000601291		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000377139		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000597198		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000593922		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000600022		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000599223		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000596765		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000599144		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000598808		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000377135		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000535977	ENST00000442265		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000539661	ENST00000599680		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000539661	ENST00000309877		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000539661	ENST00000600911		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000596822		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000601291		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000377139		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000597198		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000593922		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000600022		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000599223		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000596765		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000599144		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000598808		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000377135		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000539661	ENST00000442265		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000538492	ENST00000599680		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000538492	ENST00000309877		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000538492	ENST00000600911		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000596822		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000601291		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000377139		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000597198		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000593922		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000600022		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000599223		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000596765		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000599144		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000598808		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000377135		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000538492	ENST00000442265		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000248139	ENST00000599680		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000248139	ENST00000309877		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-intron	ENST00000248139	ENST00000600911		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000596822		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000601291		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000377139		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000597198		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000593922		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000600022		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000599223		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000596765		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000599144		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000598808		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000377135		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
5CDS-5UTR	ENST00000248139	ENST00000442265		TCGA	LD	SKCM	TCGA-D3-A3C1-06A	RAB40C	chr16	640433	+	IRF3	chr19	50166515	-
intron-5UTR	ENST00000262189	ENST00000477535		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000262189	ENST00000357234		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000262189	ENST00000402030		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000262189	ENST00000249375		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000262189	ENST00000473745		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000355193	ENST00000477535		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000355193	ENST00000357234		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000355193	ENST00000402030		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000355193	ENST00000249375		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000355193	ENST00000473745		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485655	ENST00000477535		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485655	ENST00000357234		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485655	ENST00000402030		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485655	ENST00000249375		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485655	ENST00000473745		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485241	ENST00000477535		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485241	ENST00000357234		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485241	ENST00000402030		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485241	ENST00000249375		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
intron-5UTR	ENST00000485241	ENST00000473745		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	KMT2C	chr7	151980068	-	IRF5	chr7	128582125	+
Frame-shit	ENST00000393232	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000393232	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000393232	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
Frame-shit	ENST00000353868	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000353868	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000353868	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
Frame-shit	ENST00000539636	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000539636	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000539636	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
Frame-shit	ENST00000311967	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000311967	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000311967	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
Frame-shit	ENST00000223190	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000223190	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000223190	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
Frame-shit	ENST00000393230	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000393230	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000393230	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
Frame-shit	ENST00000393231	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000393231	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-5UTR	ENST00000393231	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
intron-3CDS	ENST00000477428	ENST00000262187		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
intron-5UTR	ENST00000477428	ENST00000472642		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
intron-5UTR	ENST00000477428	ENST00000496004		TCGA	LD	SKCM	TCGA-D3-A3C3-06A	NRF1	chr7	129357216	+	RHEB	chr7	151181890	-
5CDS-intron	ENST00000298892	ENST00000413953		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000298892	ENST00000347140		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000298892	ENST00000358907		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000298892	ENST00000402412		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000298892	ENST00000441731		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000298892	ENST00000403821		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000298892	ENST00000546843		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000413953		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000347140		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000358907		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000402412		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000441731		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000403821		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000395805	ENST00000546843		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000413953		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000347140		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000358907		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000402412		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000441731		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000403821		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000251071	ENST00000546843		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000413953		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000347140		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000358907		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000402412		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000441731		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000403821		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5UTR-intron	ENST00000308433	ENST00000546843		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000413953		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000347140		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000358907		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000402412		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000441731		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000403821		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
5CDS-intron	ENST00000417045	ENST00000546843		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000413953		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000347140		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000358907		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000402412		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000441731		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000403821		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
intron-intron	ENST00000538387	ENST00000546843		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	CAPRIN2	chr12	30893954	-	R3HDM2	chr12	57699446	-
Frame-shit	ENST00000590918	ENST00000378626		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	GIPR	chr19	46181484	+	LGALS7	chr19	39262670	-
Frame-shit	ENST00000263281	ENST00000378626		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	GIPR	chr19	46181484	+	LGALS7	chr19	39262670	-
Frame-shit	ENST00000304207	ENST00000378626		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	GIPR	chr19	46181484	+	LGALS7	chr19	39262670	-
intron-3CDS	ENST00000593127	ENST00000378626		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	GIPR	chr19	46181484	+	LGALS7	chr19	39262670	-
5UTR-3CDS	ENST00000312561	ENST00000299698		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	KIAA1551	chr12	32113805	+	A2ML1	chr12	9004380	+
5UTR-3CDS	ENST00000312561	ENST00000539547		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	KIAA1551	chr12	32113805	+	A2ML1	chr12	9004380	+
5UTR-intron	ENST00000312561	ENST00000540049		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	KIAA1551	chr12	32113805	+	A2ML1	chr12	9004380	+
3UTR-3CDS	ENST00000535596	ENST00000299698		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	KIAA1551	chr12	32113805	+	A2ML1	chr12	9004380	+
3UTR-3CDS	ENST00000535596	ENST00000539547		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	KIAA1551	chr12	32113805	+	A2ML1	chr12	9004380	+
3UTR-intron	ENST00000535596	ENST00000540049		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	KIAA1551	chr12	32113805	+	A2ML1	chr12	9004380	+
5CDS-5UTR	ENST00000263274	ENST00000451356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-intron	ENST00000263274	ENST00000593537		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-intron	ENST00000263274	ENST00000301411		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-5UTR	ENST00000263274	ENST00000594938		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-5UTR	ENST00000536218	ENST00000451356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-intron	ENST00000536218	ENST00000593537		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-intron	ENST00000536218	ENST00000301411		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-5UTR	ENST00000536218	ENST00000594938		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-5UTR	ENST00000427526	ENST00000451356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-intron	ENST00000427526	ENST00000593537		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-intron	ENST00000427526	ENST00000301411		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
5CDS-5UTR	ENST00000427526	ENST00000594938		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
intron-5UTR	ENST00000599165	ENST00000451356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
intron-intron	ENST00000599165	ENST00000593537		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
intron-intron	ENST00000599165	ENST00000301411		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
intron-5UTR	ENST00000599165	ENST00000594938		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	LIG1	chr19	48664629	-	NTF4	chr19	49567119	-
Frame-shit	ENST00000513610	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000513610	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000513610	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
Frame-shit	ENST00000507288	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000507288	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000507288	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000274203	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000274203	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000274203	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000515803	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000515803	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000515803	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000427430	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000427430	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000427430	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000505695	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000505695	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000505695	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000512061	ENST00000306320		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000512061	ENST00000399793		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
intron-intron	ENST00000512061	ENST00000509048		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	MYO10	chr5	16935897	-	FAM134B	chr5	16572211	-
Frame-shit	ENST00000543824	ENST00000264664		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	PHC1	chr12	9070387	+	FGF10	chr5	44310632	-
3UTR-3CDS	ENST00000433847	ENST00000264664		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	PHC1	chr12	9070387	+	FGF10	chr5	44310632	-
Frame-shit	ENST00000433083	ENST00000264664		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	PHC1	chr12	9070387	+	FGF10	chr5	44310632	-
Frame-shit	ENST00000544916	ENST00000264664		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	PHC1	chr12	9070387	+	FGF10	chr5	44310632	-
5UTR-3CDS	ENST00000536844	ENST00000264664		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	PHC1	chr12	9070387	+	FGF10	chr5	44310632	-
intron-5UTR	ENST00000358409	ENST00000546373		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000358409	ENST00000551568		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000358409	ENST00000338356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-intron	ENST00000358409	ENST00000549691		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000359864	ENST00000546373		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000359864	ENST00000551568		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000359864	ENST00000338356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-intron	ENST00000359864	ENST00000549691		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000397122	ENST00000546373		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000397122	ENST00000551568		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-5UTR	ENST00000397122	ENST00000338356		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
intron-intron	ENST00000397122	ENST00000549691		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	TEAD4	chr12	3069362	+	CPM	chr12	69326620	-
Frame-shit	ENST00000322954	ENST00000374012		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000322954	ENST00000439301		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
5CDS-3UTR	ENST00000322954	ENST00000481202		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000539319	ENST00000374012		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000539319	ENST00000439301		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
5CDS-3UTR	ENST00000539319	ENST00000481202		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000379983	ENST00000374012		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000379983	ENST00000439301		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
5CDS-3UTR	ENST00000379983	ENST00000481202		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000560441	ENST00000374012		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
Frame-shit	ENST00000560441	ENST00000439301		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
5CDS-3UTR	ENST00000560441	ENST00000481202		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
intron-3CDS	ENST00000559183	ENST00000374012		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
intron-3CDS	ENST00000559183	ENST00000439301		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
intron-3UTR	ENST00000559183	ENST00000481202		TCGA	LD	SKCM	TCGA-D3-A3CC-06A	UACA	chr15	70987356	-	PHF20	chr20	34435272	+
5UTR-5UTR	ENST00000361193	ENST00000537330		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000361193	ENST00000570891		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000361193	ENST00000306801		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000361193	ENST00000544334		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-intron	ENST00000361193	ENST00000575542		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000411502	ENST00000537330		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000411502	ENST00000570891		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000411502	ENST00000306801		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000411502	ENST00000544334		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-intron	ENST00000411502	ENST00000575542		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000546047	ENST00000537330		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000546047	ENST00000570891		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000546047	ENST00000306801		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000546047	ENST00000544334		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-intron	ENST00000546047	ENST00000575542		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
3UTR-5UTR	ENST00000571602	ENST00000537330		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
3UTR-5UTR	ENST00000571602	ENST00000570891		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
3UTR-5UTR	ENST00000571602	ENST00000306801		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
3UTR-5UTR	ENST00000571602	ENST00000544334		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
3UTR-intron	ENST00000571602	ENST00000575542		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000572725	ENST00000537330		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000572725	ENST00000570891		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000572725	ENST00000306801		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-5UTR	ENST00000572725	ENST00000544334		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
5UTR-intron	ENST00000572725	ENST00000575542		TCGA	LD	SKCM	TCGA-D3-A3CE-06A	SLC26A11	chr17	78194295	+	RPTOR	chr17	78681641	+
In-frame	ENST00000407625	ENST00000308624		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
In-frame	ENST00000407625	ENST00000407292		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
5CDS-intron	ENST00000407625	ENST00000467759		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
In-frame	ENST00000420135	ENST00000308624		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
In-frame	ENST00000420135	ENST00000407292		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
5CDS-intron	ENST00000420135	ENST00000467759		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
intron-3CDS	ENST00000461972	ENST00000308624		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
intron-3CDS	ENST00000461972	ENST00000407292		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
intron-intron	ENST00000461972	ENST00000467759		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	FAM228B	chr2	24358057	+	SNTG2	chr2	1312266	+
5CDS-3UTR	ENST00000406961	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
intron-3UTR	ENST00000469850	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
5CDS-3UTR	ENST00000405141	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
5CDS-3UTR	ENST00000407230	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
5CDS-3UTR	ENST00000538539	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
5CDS-3UTR	ENST00000288599	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
5CDS-3UTR	ENST00000348332	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
5CDS-3UTR	ENST00000395856	ENST00000607545		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	NCOA1	chr2	24905997	+	GUSBP1	chr5	21585639	+
intron-3CDS	ENST00000485046	ENST00000504595		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
intron-5UTR	ENST00000485046	ENST00000510662		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
intron-5UTR	ENST00000485046	ENST00000329673		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
Frame-shit	ENST00000376369	ENST00000504595		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000376369	ENST00000510662		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000376369	ENST00000329673		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
Frame-shit	ENST00000196061	ENST00000504595		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000196061	ENST00000510662		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
5CDS-5UTR	ENST00000196061	ENST00000329673		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	PLOD1	chr1	12025650	+	FBXL7	chr5	15616092	+
Frame-shit	ENST00000302188	ENST00000407625		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	RBKS	chr2	28050434	-	FAM228B	chr2	24387068	+
Frame-shit	ENST00000302188	ENST00000420135		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	RBKS	chr2	28050434	-	FAM228B	chr2	24387068	+
5CDS-intron	ENST00000302188	ENST00000461972		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	RBKS	chr2	28050434	-	FAM228B	chr2	24387068	+
Frame-shit	ENST00000444339	ENST00000407625		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	RBKS	chr2	28050434	-	FAM228B	chr2	24387068	+
Frame-shit	ENST00000444339	ENST00000420135		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	RBKS	chr2	28050434	-	FAM228B	chr2	24387068	+
5CDS-intron	ENST00000444339	ENST00000461972		TCGA	LD	SKCM	TCGA-D3-A3CF-06A	RBKS	chr2	28050434	-	FAM228B	chr2	24387068	+
In-frame	ENST00000336199	ENST00000542213		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000336199	ENST00000370125		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000336199	ENST00000361544		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000336199	ENST00000370124		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000336199	ENST00000336454		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000336199	ENST00000544534		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
5CDS-intron	ENST00000336199	ENST00000469387		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
Frame-shit	ENST00000366540	ENST00000542213		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
Frame-shit	ENST00000366540	ENST00000370125		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
Frame-shit	ENST00000366540	ENST00000361544		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
Frame-shit	ENST00000366540	ENST00000370124		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
Frame-shit	ENST00000366540	ENST00000336454		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
Frame-shit	ENST00000366540	ENST00000544534		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
5CDS-intron	ENST00000366540	ENST00000469387		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000366539	ENST00000542213		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000366539	ENST00000370125		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000366539	ENST00000361544		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000366539	ENST00000370124		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000366539	ENST00000336454		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000366539	ENST00000544534		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
5CDS-intron	ENST00000366539	ENST00000469387		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000263826	ENST00000542213		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000263826	ENST00000370125		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000263826	ENST00000361544		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000263826	ENST00000370124		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000263826	ENST00000336454		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
In-frame	ENST00000263826	ENST00000544534		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
5CDS-intron	ENST00000263826	ENST00000469387		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000492957	ENST00000542213		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000492957	ENST00000370125		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000492957	ENST00000361544		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000492957	ENST00000370124		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000492957	ENST00000336454		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000492957	ENST00000544534		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-intron	ENST00000492957	ENST00000469387		TCGA	LD	SKCM	TCGA-D3-A3ML-06A	AKT3	chr1	244006427	-	CDC14A	chr1	100856288	+
intron-3CDS	ENST00000277198	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000277198	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000277198	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000277198	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000277198	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3UTR	ENST00000277198	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-intron	ENST00000277198	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000297979	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000297979	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000297979	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000297979	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000297979	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
5CDS-3UTR	ENST00000297979	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
5CDS-intron	ENST00000297979	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000375315	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000375315	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000375315	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000375315	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
In-frame	ENST00000375315	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
5CDS-3UTR	ENST00000375315	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
5CDS-intron	ENST00000375315	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000395357	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000395357	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000395357	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000395357	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000395357	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3UTR	ENST00000395357	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-intron	ENST00000395357	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000425634	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000425634	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000425634	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000425634	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000425634	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3UTR	ENST00000425634	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-intron	ENST00000425634	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000433691	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000433691	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000433691	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000433691	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000433691	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3UTR	ENST00000433691	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-intron	ENST00000433691	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000473778	ENST00000265077		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000473778	ENST00000342785		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000473778	ENST00000343200		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000473778	ENST00000512590		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3CDS	ENST00000473778	ENST00000502527		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-3UTR	ENST00000473778	ENST00000513016		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
intron-intron	ENST00000473778	ENST00000513984		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	C9orf3	chr9	97741709	+	VCAN	chr5	82868235	+
3UTR-3CDS	ENST00000486890	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
3UTR-3CDS	ENST00000486890	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
3UTR-3CDS	ENST00000486890	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
3UTR-5UTR	ENST00000486890	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
In-frame	ENST00000322753	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
In-frame	ENST00000322753	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
In-frame	ENST00000322753	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
5CDS-5UTR	ENST00000322753	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	MINOS1	chr1	19923603	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000349945	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000349945	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000349945	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-5UTR	ENST00000349945	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000432919	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000432919	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000432919	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5CDS-5UTR	ENST00000432919	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000354436	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000354436	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000354436	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5CDS-5UTR	ENST00000354436	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000567239	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000567239	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
In-frame	ENST00000567239	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5CDS-5UTR	ENST00000567239	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000393742	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000393742	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000393742	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-5UTR	ENST00000393742	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000566899	ENST00000393276		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000566899	ENST00000393274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-3CDS	ENST00000566899	ENST00000393277		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
5UTR-5UTR	ENST00000566899	ENST00000481894		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	NFAT5	chr16	69600277	+	DENND2C	chr1	115130573	-
Frame-shit	ENST00000389327	ENST00000521746		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
Frame-shit	ENST00000389327	ENST00000420274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
5CDS-3UTR	ENST00000389327	ENST00000388745		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
Frame-shit	ENST00000389328	ENST00000521746		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
Frame-shit	ENST00000389328	ENST00000420274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
5CDS-3UTR	ENST00000389328	ENST00000388745		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
Frame-shit	ENST00000438773	ENST00000521746		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
Frame-shit	ENST00000438773	ENST00000420274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
5CDS-3UTR	ENST00000438773	ENST00000388745		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
intron-3CDS	ENST00000522504	ENST00000521746		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
intron-3CDS	ENST00000522504	ENST00000420274		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
intron-3UTR	ENST00000522504	ENST00000388745		TCGA	LD	SKCM	TCGA-D3-A3MO-06A	TRAPPC9	chr8	141034034	-	PLEKHA2	chr8	38793512	+
5UTR-3CDS	ENST00000398958	ENST00000484532		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
5UTR-3CDS	ENST00000398958	ENST00000234875		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
5UTR-5UTR	ENST00000398958	ENST00000497965		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
5UTR-3CDS	ENST00000373833	ENST00000484532		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
5UTR-3CDS	ENST00000373833	ENST00000234875		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
5UTR-5UTR	ENST00000373833	ENST00000497965		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-3CDS	ENST00000373832	ENST00000484532		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-3CDS	ENST00000373832	ENST00000234875		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-5UTR	ENST00000373832	ENST00000497965		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-3CDS	ENST00000373831	ENST00000484532		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-3CDS	ENST00000373831	ENST00000234875		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-5UTR	ENST00000373831	ENST00000497965		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-3CDS	ENST00000429051	ENST00000484532		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-3CDS	ENST00000429051	ENST00000234875		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
intron-5UTR	ENST00000429051	ENST00000497965		TCGA	LD	SKCM	TCGA-D3-A3MV-06A	RCC1	chr1	28834672	+	RPL22	chr1	6257816	-
Frame-shit	ENST00000351960	ENST00000297668		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
Frame-shit	ENST00000351960	ENST00000377656		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000351960	ENST00000358144		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000351960	ENST00000323947		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000351960	ENST00000377659		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000351960	ENST00000377653		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
In-frame	ENST00000358965	ENST00000297668		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
Frame-shit	ENST00000358965	ENST00000377656		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000358965	ENST00000358144		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000358965	ENST00000323947		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000358965	ENST00000377659		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000358965	ENST00000377653		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
Frame-shit	ENST00000393695	ENST00000297668		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
Frame-shit	ENST00000393695	ENST00000377656		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000393695	ENST00000358144		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000393695	ENST00000323947		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000393695	ENST00000377659		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
5CDS-intron	ENST00000393695	ENST00000377653		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
intron-3CDS	ENST00000543450	ENST00000297668		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
intron-3CDS	ENST00000543450	ENST00000377656		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
intron-intron	ENST00000543450	ENST00000358144		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
intron-intron	ENST00000543450	ENST00000323947		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
intron-intron	ENST00000543450	ENST00000377659		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
intron-intron	ENST00000543450	ENST00000377653		TCGA	LD	SKCM	TCGA-D3-A51E-06A	NUMA1	chr11	71746948	-	CNTNAP3	chr9	39074008	-
Frame-shit	ENST00000536782	ENST00000376753		TCGA	LD	SKCM	TCGA-D3-A51E-06A	TNFRSF1B	chr1	12227226	+	FBXO6	chr1	11733334	+
3UTR-3CDS	ENST00000492361	ENST00000376753		TCGA	LD	SKCM	TCGA-D3-A51E-06A	TNFRSF1B	chr1	12227226	+	FBXO6	chr1	11733334	+
Frame-shit	ENST00000376259	ENST00000376753		TCGA	LD	SKCM	TCGA-D3-A51E-06A	TNFRSF1B	chr1	12227226	+	FBXO6	chr1	11733334	+
5UTR-3CDS	ENST00000311083	ENST00000536525		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000311083	ENST00000397909		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000311083	ENST00000228327		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000311083	ENST00000266692		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-intron	ENST00000311083	ENST00000552300		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-intron	ENST00000311083	ENST00000541270		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000552330	ENST00000536525		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000552330	ENST00000397909		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000552330	ENST00000228327		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000552330	ENST00000266692		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-intron	ENST00000552330	ENST00000552300		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-intron	ENST00000552330	ENST00000541270		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-3CDS	ENST00000546966	ENST00000536525		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-3CDS	ENST00000546966	ENST00000397909		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-3CDS	ENST00000546966	ENST00000228327		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-3CDS	ENST00000546966	ENST00000266692		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-intron	ENST00000546966	ENST00000552300		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-intron	ENST00000546966	ENST00000541270		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000547435	ENST00000536525		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000547435	ENST00000397909		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000547435	ENST00000228327		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-3CDS	ENST00000547435	ENST00000266692		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-intron	ENST00000547435	ENST00000552300		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
5UTR-intron	ENST00000547435	ENST00000541270		TCGA	LD	SKCM	TCGA-D3-A51H-06A	CSRP2	chr12	77272718	-	NAV3	chr12	78334099	+
intron-3CDS	ENST00000502271	ENST00000397936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000502271	ENST00000541094		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000502271	ENST00000398521		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
intron-3CDS	ENST00000502271	ENST00000398523		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000504924	ENST00000397936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000504924	ENST00000541094		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000504924	ENST00000398521		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000504924	ENST00000398523		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
5UTR-3CDS	ENST00000510591	ENST00000397936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
5UTR-3CDS	ENST00000510591	ENST00000541094		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
5UTR-3CDS	ENST00000510591	ENST00000398521		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
5UTR-3CDS	ENST00000510591	ENST00000398523		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000507646	ENST00000397936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000507646	ENST00000541094		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000507646	ENST00000398521		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
Frame-shit	ENST00000507646	ENST00000398523		TCGA	LD	SKCM	TCGA-D3-A51N-06A	ARL15	chr5	53467614	-	STK32A	chr5	146703461	+
5CDS-intron	ENST00000296933	ENST00000337702		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
5CDS-intron	ENST00000296933	ENST00000503936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
5CDS-intron	ENST00000265094	ENST00000337702		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
5CDS-intron	ENST00000265094	ENST00000503936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
5CDS-intron	ENST00000393802	ENST00000337702		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
5CDS-intron	ENST00000393802	ENST00000503936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
intron-intron	ENST00000425623	ENST00000337702		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
intron-intron	ENST00000425623	ENST00000503936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
intron-intron	ENST00000522891	ENST00000337702		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
intron-intron	ENST00000522891	ENST00000503936		TCGA	LD	SKCM	TCGA-D3-A51N-06A	FBXW11	chr5	171433462	-	TTC33	chr5	40513171	-
intron-3CDS	ENST00000513458	ENST00000379611		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000513458	ENST00000512261		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000513458	ENST00000506442		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000513458	ENST00000395557		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-5UTR	ENST00000513458	ENST00000503027		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000506252	ENST00000379611		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000506252	ENST00000512261		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000506252	ENST00000506442		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-3CDS	ENST00000506252	ENST00000395557		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
intron-5UTR	ENST00000506252	ENST00000503027		TCGA	LD	SKCM	TCGA-D3-A51N-06A	SREK1IP1	chr5	64060802	-	CCDC112	chr5	114612751	-
Frame-shit	ENST00000397936	ENST00000398454		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000397936	ENST00000359874		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000397936	ENST00000256084		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
5CDS-intron	ENST00000397936	ENST00000476608		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000541094	ENST00000398454		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000541094	ENST00000359874		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000541094	ENST00000256084		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
5CDS-intron	ENST00000541094	ENST00000476608		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000398521	ENST00000398454		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000398521	ENST00000359874		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000398521	ENST00000256084		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
5CDS-intron	ENST00000398521	ENST00000476608		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000398523	ENST00000398454		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000398523	ENST00000359874		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000398523	ENST00000256084		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
5CDS-intron	ENST00000398523	ENST00000476608		TCGA	LD	SKCM	TCGA-D3-A51N-06A	STK32A	chr5	146619249	+	SPINK5	chr5	147449886	+
Frame-shit	ENST00000514135	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000514135	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000514135	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000514135	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000514135	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5CDS-5UTR	ENST00000514135	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000296595	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000296595	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000296595	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000296595	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
Frame-shit	ENST00000296595	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5CDS-5UTR	ENST00000296595	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000506536	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000506536	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000506536	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000506536	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000506536	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-5UTR	ENST00000506536	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000512429	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000512429	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000512429	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000512429	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000512429	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-5UTR	ENST00000512429	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000509387	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000509387	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000509387	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000509387	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-3CDS	ENST00000509387	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
5UTR-5UTR	ENST00000509387	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000511218	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-5UTR	ENST00000511218	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000304623		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000359640		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000511377		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000458100		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-3CDS	ENST00000515293	ENST00000503622		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
intron-5UTR	ENST00000515293	ENST00000495388		TCGA	LD	SKCM	TCGA-D3-A51N-06A	TMEM161B	chr5	87564538	-	CTNND2	chr5	11117679	-
In-frame	ENST00000547776	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000547776	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000547776	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000329257	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000329257	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000329257	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000547010	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000547010	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000547010	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
Frame-shit	ENST00000341752	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000341752	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000341752	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000549558	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000549558	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000549558	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000550693	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000550693	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000550693	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
Frame-shit	ENST00000549025	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000549025	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000549025	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000549493	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000549493	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000549493	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000547446	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000547446	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000547446	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
Frame-shit	ENST00000333732	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000333732	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000333732	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000546568	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000546568	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000546568	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000332712	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000332712	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000332712	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
In-frame	ENST00000546960	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-intron	ENST00000546960	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5CDS-5UTR	ENST00000546960	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
intron-3CDS	ENST00000550833	ENST00000261735		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
intron-intron	ENST00000550833	ENST00000455836		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
intron-5UTR	ENST00000550833	ENST00000546477		TCGA	LD	SKCM	TCGA-D3-A5GL-06A	ANKS1B	chr12	99166820	-	ERP29	chr12	112457560	+
5UTR-3CDS	ENST00000215794	ENST00000248975		TCGA	LD	SKCM	TCGA-D3-A5GN-06A	USP18	chr22	18632990	+	YWHAH	chr22	32352127	+
5UTR-3CDS	ENST00000215794	ENST00000397492		TCGA	LD	SKCM	TCGA-D3-A5GN-06A	USP18	chr22	18632990	+	YWHAH	chr22	32352127	+
5UTR-3UTR	ENST00000215794	ENST00000471374		TCGA	LD	SKCM	TCGA-D3-A5GN-06A	USP18	chr22	18632990	+	YWHAH	chr22	32352127	+
Frame-shit	ENST00000256646	ENST00000354219		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
Frame-shit	ENST00000256646	ENST00000256585		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
Frame-shit	ENST00000256646	ENST00000530654		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
Frame-shit	ENST00000256646	ENST00000369401		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000354219		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000256585		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000530654		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000369401		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000354219		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000256585		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000530654		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000369401		TCGA	LD	SKCM	TCGA-D3-A5GU-06A	NOTCH2	chr1	120611948	-	REG4	chr1	120345788	-
Frame-shit	ENST00000421999	ENST00000262320		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
Frame-shit	ENST00000421999	ENST00000354866		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
5CDS-5UTR	ENST00000421999	ENST00000481769		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
3UTR-3CDS	ENST00000496116	ENST00000262320		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
3UTR-3CDS	ENST00000496116	ENST00000354866		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
3UTR-5UTR	ENST00000496116	ENST00000481769		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
intron-3CDS	ENST00000489081	ENST00000262320		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
intron-3CDS	ENST00000489081	ENST00000354866		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
intron-5UTR	ENST00000489081	ENST00000481769		TCGA	LD	SKCM	TCGA-D3-A8GC-06A	CMSS1	chr3	99536887	+	AXIN1	chr16	348251	-
In-frame	ENST00000368301	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368301	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368301	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368301	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000368301	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000361308	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000361308	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000361308	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000361308	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000361308	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000347559	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000347559	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000347559	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000347559	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000347559	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368300	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368300	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368300	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368300	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000368300	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368299	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368299	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368299	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368299	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000368299	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000448611	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000448611	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000448611	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000448611	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000448611	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368297	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368297	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368297	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000368297	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000368297	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000473598	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000473598	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000473598	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000473598	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000473598	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000392353	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000392353	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000392353	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
In-frame	ENST00000392353	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000392353	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
intron-3CDS	ENST00000496738	ENST00000392302		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
intron-3CDS	ENST00000496738	ENST00000368196		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
intron-3CDS	ENST00000496738	ENST00000524377		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
intron-3CDS	ENST00000496738	ENST00000358660		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
intron-intron	ENST00000496738	ENST00000531606		TCGA	LD	SKCM	TCGA-D3-A8GE-06A	LMNA	chr1	156100564	+	NTRK1	chr1	156844698	+
5CDS-intron	ENST00000262320	ENST00000399951		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-intron	ENST00000262320	ENST00000399953		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-5UTR	ENST00000262320	ENST00000405960		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-intron	ENST00000354866	ENST00000399951		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-intron	ENST00000354866	ENST00000399953		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
5CDS-5UTR	ENST00000354866	ENST00000405960		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-intron	ENST00000481769	ENST00000399951		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-intron	ENST00000481769	ENST00000399953		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
intron-5UTR	ENST00000481769	ENST00000405960		TCGA	LD	SKCM	TCGA-D3-A8GI-06A	AXIN1	chr16	396148	-	NPRL3	chr16	169254	-
Frame-shit	ENST00000395002	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000395002	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000264344	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000264344	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000503556	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000503556	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000511976	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000511976	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000508369	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000508369	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000513837	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
Frame-shit	ENST00000513837	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000502459	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000502459	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000509094	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000509094	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000515600	ENST00000515655		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
intron-3CDS	ENST00000515600	ENST00000237612		TCGA	LD	SKCM	TCGA-D3-A8GO-06A	FAM13A	chr4	89744127	-	ABCG2	chr4	89053787	-
5CDS-5UTR	ENST00000215832	ENST00000337471		TCGA	LD	SKCM	TCGA-D3-A8GR-06A	MAPK1	chr22	22153301	-	PRAMENP	chr22	22380725	-
5CDS-5UTR	ENST00000398822	ENST00000337471		TCGA	LD	SKCM	TCGA-D3-A8GR-06A	MAPK1	chr22	22153301	-	PRAMENP	chr22	22380725	-
5CDS-5UTR	ENST00000544786	ENST00000337471		TCGA	LD	SKCM	TCGA-D3-A8GR-06A	MAPK1	chr22	22153301	-	PRAMENP	chr22	22380725	-
intron-5UTR	ENST00000491588	ENST00000337471		TCGA	LD	SKCM	TCGA-D3-A8GR-06A	MAPK1	chr22	22153301	-	PRAMENP	chr22	22380725	-
Frame-shit	ENST00000392562	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
Frame-shit	ENST00000392562	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000392562	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000392562	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000392562	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000392562	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
Frame-shit	ENST00000316804	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
Frame-shit	ENST00000316804	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000316804	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000316804	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000316804	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000316804	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
Frame-shit	ENST00000316615	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
Frame-shit	ENST00000316615	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000316615	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000316615	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000316615	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000316615	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000392563	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000392563	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000392563	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000392563	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000392563	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000392563	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000392564	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000392564	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000392564	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000392564	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000392564	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000392564	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000578961	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000578961	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000578961	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-5UTR	ENST00000578961	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000578961	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
5CDS-intron	ENST00000578961	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000462266	ENST00000262291		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
intron-3CDS	ENST00000462266	ENST00000537567		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000462266	ENST00000539763		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
intron-5UTR	ENST00000462266	ENST00000536180		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
intron-intron	ENST00000462266	ENST00000545362		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
intron-intron	ENST00000462266	ENST00000588617		TCGA	LD	SKCM	TCGA-D9-A1JW-06A	GRB2	chr17	73389632	-	VMP1	chr17	57842332	+
In-frame	ENST00000334528	ENST00000397795		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000334528	ENST00000256552		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000334528	ENST00000542188		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
5CDS-intron	ENST00000334528	ENST00000559179		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000561249	ENST00000397795		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000561249	ENST00000256552		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000561249	ENST00000542188		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
5CDS-intron	ENST00000561249	ENST00000559179		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000559047	ENST00000397795		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000559047	ENST00000256552		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
In-frame	ENST00000559047	ENST00000542188		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
5CDS-intron	ENST00000559047	ENST00000559179		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000558197	ENST00000397795		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000558197	ENST00000256552		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000558197	ENST00000542188		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-intron	ENST00000558197	ENST00000559179		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000559150	ENST00000397795		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000559150	ENST00000256552		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000559150	ENST00000542188		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-intron	ENST00000559150	ENST00000559179		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000320930	ENST00000397795		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000320930	ENST00000256552		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-3CDS	ENST00000320930	ENST00000542188		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
intron-intron	ENST00000320930	ENST00000559179		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	FMN1	chr15	33300215	-	TRPM1	chr15	31353717	-
5UTR-3CDS	ENST00000355630	ENST00000402357		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000355630	ENST00000358295		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000355630	ENST00000473898		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000355630	ENST00000406880		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000396617	ENST00000402357		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000396617	ENST00000358295		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000396617	ENST00000473898		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000396617	ENST00000406880		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000402042	ENST00000402357		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000402042	ENST00000358295		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000402042	ENST00000473898		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000402042	ENST00000406880		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000466278	ENST00000402357		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-3CDS	ENST00000466278	ENST00000358295		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000466278	ENST00000473898		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
5UTR-intron	ENST00000466278	ENST00000406880		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000407029	ENST00000402357		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000407029	ENST00000358295		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-intron	ENST00000407029	ENST00000473898		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-intron	ENST00000407029	ENST00000406880		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000402630	ENST00000402357		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-3CDS	ENST00000402630	ENST00000358295		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-intron	ENST00000402630	ENST00000473898		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
intron-intron	ENST00000402630	ENST00000406880		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	MKL1	chr22	41032482	-	FAM19A5	chr22	49042409	+
In-frame	ENST00000327134	ENST00000445299		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PAK2	chr3	196509704	+	SENP5	chr3	196626537	+
In-frame	ENST00000327134	ENST00000323460		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PAK2	chr3	196509704	+	SENP5	chr3	196626537	+
5CDS-5UTR	ENST00000327134	ENST00000419026		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PAK2	chr3	196509704	+	SENP5	chr3	196626537	+
5CDS-intron	ENST00000327134	ENST00000489744		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PAK2	chr3	196509704	+	SENP5	chr3	196626537	+
Frame-shit	ENST00000329627	ENST00000216038		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
5CDS-3UTR	ENST00000329627	ENST00000451746		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
5CDS-intron	ENST00000329627	ENST00000476619		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
Frame-shit	ENST00000399744	ENST00000216038		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
5CDS-3UTR	ENST00000399744	ENST00000451746		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
5CDS-intron	ENST00000399744	ENST00000476619		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
intron-3CDS	ENST00000428061	ENST00000216038		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
intron-3UTR	ENST00000428061	ENST00000451746		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
intron-intron	ENST00000428061	ENST00000476619		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	PEX26	chr22	18568024	+	RTCB	chr22	32784086	-
5CDS-5UTR	ENST00000490103	ENST00000404699		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000490103	ENST00000308700		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000397871	ENST00000404699		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000397871	ENST00000308700		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000397872	ENST00000404699		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000397872	ENST00000308700		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000397873	ENST00000404699		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5CDS-5UTR	ENST00000397873	ENST00000308700		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	THOC5	chr22	29924067	-	ISX	chr22	35462745	+
5UTR-3CDS	ENST00000406426	ENST00000300399		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-3CDS	ENST00000406426	ENST00000397452		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-5UTR	ENST00000406426	ENST00000534972		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-5UTR	ENST00000406426	ENST00000432451		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-intron	ENST00000406426	ENST00000397450		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-3CDS	ENST00000360412	ENST00000300399		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-3CDS	ENST00000360412	ENST00000397452		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-5UTR	ENST00000360412	ENST00000534972		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-5UTR	ENST00000360412	ENST00000432451		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
5UTR-intron	ENST00000360412	ENST00000397450		TCGA	LD	SKCM	TCGA-D9-A1JX-06A	ZNF280B	chr22	22862128	-	BPIFC	chr22	32843327	-
Frame-shit	ENST00000545606	ENST00000344096		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CAND1	chr12	67692875	+	DYRK2	chr12	68050886	+
5CDS-5UTR	ENST00000545606	ENST00000393555		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CAND1	chr12	67692875	+	DYRK2	chr12	68050886	+
5CDS-intron	ENST00000545606	ENST00000537632		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CAND1	chr12	67692875	+	DYRK2	chr12	68050886	+
intron-3CDS	ENST00000539109	ENST00000344096		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CAND1	chr12	67692875	+	DYRK2	chr12	68050886	+
intron-5UTR	ENST00000539109	ENST00000393555		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CAND1	chr12	67692875	+	DYRK2	chr12	68050886	+
intron-intron	ENST00000539109	ENST00000537632		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CAND1	chr12	67692875	+	DYRK2	chr12	68050886	+
In-frame	ENST00000229195	ENST00000247843		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
In-frame	ENST00000229195	ENST00000548020		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
In-frame	ENST00000418359	ENST00000247843		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
In-frame	ENST00000418359	ENST00000548020		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
intron-3CDS	ENST00000548230	ENST00000247843		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
intron-3CDS	ENST00000548230	ENST00000548020		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
In-frame	ENST00000551483	ENST00000247843		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
In-frame	ENST00000551483	ENST00000548020		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	CNOT2	chr12	70736087	+	YEATS4	chr12	69756568	+
Frame-shit	ENST00000394855	ENST00000374379		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
5CDS-3UTR	ENST00000394855	ENST00000497755		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
Frame-shit	ENST00000489435	ENST00000374379		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
5CDS-3UTR	ENST00000489435	ENST00000497755		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3CDS	ENST00000343789	ENST00000374379		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3UTR	ENST00000343789	ENST00000497755		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3CDS	ENST00000394852	ENST00000374379		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3UTR	ENST00000394852	ENST00000497755		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3CDS	ENST00000446172	ENST00000374379		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3UTR	ENST00000446172	ENST00000497755		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	DNAJA4	chr15	78556735	+	CLIC4	chr1	25124233	+
intron-3CDS	ENST00000545951	ENST00000481110		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000545951	ENST00000440486		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000545951	ENST00000412135		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000545951	ENST00000340107		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000545951	ENST00000260795		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000545951	ENST00000352904		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-intron	ENST00000545951	ENST00000474521		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000382839	ENST00000481110		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000382839	ENST00000440486		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000382839	ENST00000412135		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000382839	ENST00000340107		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000382839	ENST00000260795		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000382839	ENST00000352904		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-intron	ENST00000382839	ENST00000474521		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000324666	ENST00000481110		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000324666	ENST00000440486		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000324666	ENST00000412135		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000324666	ENST00000340107		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000324666	ENST00000260795		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000324666	ENST00000352904		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-intron	ENST00000324666	ENST00000474521		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000502458	ENST00000481110		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000502458	ENST00000440486		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000502458	ENST00000412135		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000502458	ENST00000340107		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000502458	ENST00000260795		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000502458	ENST00000352904		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-intron	ENST00000502458	ENST00000474521		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000505311	ENST00000481110		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000505311	ENST00000440486		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000505311	ENST00000412135		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000505311	ENST00000340107		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000505311	ENST00000260795		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-3CDS	ENST00000505311	ENST00000352904		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
intron-intron	ENST00000505311	ENST00000474521		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	FAM193A	chr4	2538897	+	FGFR3	chr4	1803347	+
Frame-shit	ENST00000406606	ENST00000226951		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-5UTR	ENST00000406606	ENST00000442825		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-5UTR	ENST00000406606	ENST00000507719		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-intron	ENST00000406606	ENST00000515667		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
Frame-shit	ENST00000371850	ENST00000226951		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-5UTR	ENST00000371850	ENST00000442825		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-5UTR	ENST00000371850	ENST00000507719		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-intron	ENST00000371850	ENST00000515667		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
Frame-shit	ENST00000371851	ENST00000226951		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-5UTR	ENST00000371851	ENST00000442825		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-5UTR	ENST00000371851	ENST00000507719		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5CDS-intron	ENST00000371851	ENST00000515667		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5UTR-3CDS	ENST00000486113	ENST00000226951		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5UTR-5UTR	ENST00000486113	ENST00000442825		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5UTR-5UTR	ENST00000486113	ENST00000507719		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
5UTR-intron	ENST00000486113	ENST00000515667		TCGA	LD	SKCM	TCGA-D9-A1X3-06A	VAV2	chr9	136857197	-	CLNK	chr4	10599673	-
Frame-shit	ENST00000508305	ENST00000389054		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000520569		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000253811		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000398566		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000398562		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000398557		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000389057		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
Frame-shit	ENST00000508305	ENST00000518047		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
5CDS-5UTR	ENST00000508305	ENST00000494967		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000389054		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000520569		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000253811		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000398566		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000398562		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000398557		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000389057		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000239440	ENST00000518047		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
5CDS-5UTR	ENST00000239440	ENST00000494967		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000389054		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000520569		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000253811		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000398566		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000398562		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000398557		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000389057		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000512390	ENST00000518047		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-5UTR	ENST00000512390	ENST00000494967		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000389054		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000520569		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000253811		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000398566		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000398562		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000398557		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000389057		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-3CDS	ENST00000513878	ENST00000518047		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
intron-5UTR	ENST00000513878	ENST00000494967		TCGA	LD	SKCM	TCGA-D9-A3Z1-06A	ARAP3	chr5	141059112	-	DIAPH1	chr5	140914000	-
In-frame	ENST00000319023	ENST00000393799		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000530427		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000393800		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000534534		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000524845		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000265637		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000524904		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000393801		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000265636		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000529710		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000319023	ENST00000527403		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
In-frame	ENST00000539574	ENST00000393799		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000530427		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000393800		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000534534		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000524845		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000265637		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000524904		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000393801		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000265636		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000529710		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
5CDS-intron	ENST00000539574	ENST00000527403		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-3CDS	ENST00000530055	ENST00000393799		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000530427		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000393800		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000534534		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000524845		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000265637		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000524904		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000393801		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000265636		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000529710		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000530055	ENST00000527403		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-3CDS	ENST00000526039	ENST00000393799		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000530427		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000393800		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000534534		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000524845		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000265637		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000524904		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000393801		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000265636		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000529710		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
intron-intron	ENST00000526039	ENST00000527403		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	NADSYN1	chr11	71189515	+	PPP6R3	chr11	68321613	+
Frame-shit	ENST00000224167	ENST00000330579		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000224167	ENST00000535343		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000224167	ENST00000538784		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000371625	ENST00000330579		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000371625	ENST00000535343		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000371625	ENST00000538784		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000460340	ENST00000330579		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000460340	ENST00000535343		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000460340	ENST00000538784		TCGA	LD	SKCM	TCGA-D9-A3Z3-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000264935	ENST00000382492		TCGA	LD	SKCM	TCGA-D9-A4Z2-01A	CEP72	chr5	620376	+	TAS2R1	chr5	9630104	-
Frame-shit	ENST00000444221	ENST00000382492		TCGA	LD	SKCM	TCGA-D9-A4Z2-01A	CEP72	chr5	620376	+	TAS2R1	chr5	9630104	-
intron-3CDS	ENST00000514507	ENST00000382492		TCGA	LD	SKCM	TCGA-D9-A4Z2-01A	CEP72	chr5	620376	+	TAS2R1	chr5	9630104	-
Frame-shit	ENST00000380607	ENST00000422223		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
Frame-shit	ENST00000380607	ENST00000380881		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
Frame-shit	ENST00000380607	ENST00000380880		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
Frame-shit	ENST00000380607	ENST00000380894		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
5CDS-intron	ENST00000380607	ENST00000486223		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
3UTR-3CDS	ENST00000467085	ENST00000422223		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
3UTR-3CDS	ENST00000467085	ENST00000380881		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
3UTR-3CDS	ENST00000467085	ENST00000380880		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
3UTR-3CDS	ENST00000467085	ENST00000380894		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
3UTR-intron	ENST00000467085	ENST00000486223		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
intron-3CDS	ENST00000537391	ENST00000422223		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
intron-3CDS	ENST00000537391	ENST00000380881		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
intron-3CDS	ENST00000537391	ENST00000380880		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
intron-3CDS	ENST00000537391	ENST00000380894		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
intron-intron	ENST00000537391	ENST00000486223		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SH3GL2	chr9	17579285	+	FREM1	chr9	14750274	-
intron-3UTR	ENST00000269033	ENST00000585538		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SSH2	chr17	28175867	-	AOC4P	chr17	41020595	+
5CDS-3UTR	ENST00000540801	ENST00000585538		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SSH2	chr17	28175867	-	AOC4P	chr17	41020595	+
intron-3UTR	ENST00000324677	ENST00000585538		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SSH2	chr17	28175867	-	AOC4P	chr17	41020595	+
intron-3UTR	ENST00000582084	ENST00000585538		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SSH2	chr17	28175867	-	AOC4P	chr17	41020595	+
intron-3UTR	ENST00000590153	ENST00000585538		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SSH2	chr17	28175867	-	AOC4P	chr17	41020595	+
intron-3UTR	ENST00000579954	ENST00000585538		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	SSH2	chr17	28175867	-	AOC4P	chr17	41020595	+
5CDS-intron	ENST00000424789	ENST00000330458		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000424789	ENST00000535805		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000424789	ENST00000535592		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000424789	ENST00000394453		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000424789	ENST00000592614		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000424789	ENST00000341264		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000424789	ENST00000588834		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000330458		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000535805		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000535592		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000394453		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000592614		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000341264		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
5CDS-intron	ENST00000389520	ENST00000588834		TCGA	LD	SKCM	TCGA-D9-A4Z3-01A	TANC2	chr17	61396451	+	TBC1D3G	chr17	36343995	+
In-frame	ENST00000405454	ENST00000283351		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
In-frame	ENST00000405454	ENST00000582539		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
5CDS-intron	ENST00000405454	ENST00000582513		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
5CDS-intron	ENST00000405454	ENST00000584876		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
In-frame	ENST00000370035	ENST00000283351		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
In-frame	ENST00000370035	ENST00000582539		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
5CDS-intron	ENST00000370035	ENST00000582513		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
5CDS-intron	ENST00000370035	ENST00000584876		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM102B	chr1	109148874	+	TRAPPC8	chr18	29419420	-
Frame-shit	ENST00000402357	ENST00000334258		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
Frame-shit	ENST00000402357	ENST00000554873		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
Frame-shit	ENST00000402357	ENST00000557275		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
5CDS-intron	ENST00000402357	ENST00000553340		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
Frame-shit	ENST00000358295	ENST00000334258		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
Frame-shit	ENST00000358295	ENST00000554873		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
Frame-shit	ENST00000358295	ENST00000557275		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
5CDS-intron	ENST00000358295	ENST00000553340		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-3CDS	ENST00000473898	ENST00000334258		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-3CDS	ENST00000473898	ENST00000554873		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-3CDS	ENST00000473898	ENST00000557275		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-intron	ENST00000473898	ENST00000553340		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-3CDS	ENST00000406880	ENST00000334258		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-3CDS	ENST00000406880	ENST00000554873		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-3CDS	ENST00000406880	ENST00000557275		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
intron-intron	ENST00000406880	ENST00000553340		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	FAM19A5	chr22	49042558	+	SYNE3	chr14	95906412	-
Frame-shit	ENST00000438423	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000438423	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000438423	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000438423	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000438423	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000438423	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000438423	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000267811	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000267811	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000267811	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000267811	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000267811	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000267811	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000267811	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000452095	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000452095	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000452095	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000452095	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000452095	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000452095	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000452095	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000333725	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000333725	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000333725	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000333725	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000333725	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000333725	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000333725	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000557843	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000557843	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000557843	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000557843	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000557843	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
Frame-shit	ENST00000557843	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
5CDS-intron	ENST00000557843	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000560764	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000560764	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000560764	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000560764	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000560764	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000560764	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000560764	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000543579	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000543579	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000543579	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000543579	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000543579	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000543579	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000543579	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000537840	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000537840	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000537840	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000537840	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000537840	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000537840	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000537840	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000343827	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000343827	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000343827	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000343827	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000343827	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000343827	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000343827	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559710	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559710	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559710	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559710	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559710	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559710	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559710	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559703	ENST00000288398		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559703	ENST00000358278		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559703	ENST00000560445		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559703	ENST00000403994		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559703	ENST00000357980		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-3CDS	ENST00000559703	ENST00000559556		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000559397		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000267996		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000334895		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000404484		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000560959		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000559281		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
intron-intron	ENST00000559703	ENST00000317516		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TCF12	chr15	57213296	+	TPM1	chr15	63336226	+
In-frame	ENST00000187762	ENST00000546361		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TMEM38A	chr19	16772152	+	CHERP	chr19	16646447	-
In-frame	ENST00000187762	ENST00000198939		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TMEM38A	chr19	16772152	+	CHERP	chr19	16646447	-
5CDS-intron	ENST00000187762	ENST00000544299		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	TMEM38A	chr19	16772152	+	CHERP	chr19	16646447	-
Frame-shit	ENST00000392415	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000392415	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000392415	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
Frame-shit	ENST00000410062	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000410062	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000410062	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
Frame-shit	ENST00000602710	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602710	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602710	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
intron-3CDS	ENST00000602837	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
intron-intron	ENST00000602837	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
intron-intron	ENST00000602837	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
Frame-shit	ENST00000602959	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602959	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602959	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
Frame-shit	ENST00000602475	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602475	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602475	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
Frame-shit	ENST00000602632	ENST00000359520		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602632	ENST00000561228		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
5CDS-intron	ENST00000602632	ENST00000558678		TCGA	LD	SKCM	TCGA-D9-A4Z5-01A	UBE2E3	chr2	181848817	+	TECPR2	chr14	102963313	+
In-frame	ENST00000395811	ENST00000251849		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395811	ENST00000442415		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395811	ENST00000534997		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395811	ENST00000542177		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000444976	ENST00000251849		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000444976	ENST00000442415		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000444976	ENST00000534997		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000444976	ENST00000542177		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395804	ENST00000251849		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395804	ENST00000442415		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395804	ENST00000534997		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000395804	ENST00000542177		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000341712	ENST00000251849		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000341712	ENST00000442415		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000341712	ENST00000534997		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000341712	ENST00000542177		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395806	ENST00000251849		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395806	ENST00000442415		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395806	ENST00000534997		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395806	ENST00000542177		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395807	ENST00000251849		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395807	ENST00000442415		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395807	ENST00000534997		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000395807	ENST00000542177		TCGA	LD	SKCM	TCGA-D9-A4Z6-06A	MPRIP	chr17	17083402	+	RAF1	chr3	12641914	-
In-frame	ENST00000584667	ENST00000225992		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
In-frame	ENST00000584667	ENST00000591228		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
In-frame	ENST00000584667	ENST00000587006		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
intron-3CDS	ENST00000355423	ENST00000225992		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
intron-3CDS	ENST00000355423	ENST00000591228		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
intron-3CDS	ENST00000355423	ENST00000587006		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
3UTR-3CDS	ENST00000579864	ENST00000225992		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
3UTR-3CDS	ENST00000579864	ENST00000591228		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
3UTR-3CDS	ENST00000579864	ENST00000587006		TCGA	LD	SKCM	TCGA-D9-A6E9-06A	SAP30BP	chr17	73667943	+	PPY	chr17	42019022	-
5UTR-5UTR	ENST00000263650	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000263650	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000263650	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000263650	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000389989	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000389989	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000389989	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000389989	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000525498	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000525498	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000525498	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000525498	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000542243	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000542243	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000542243	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000542243	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000348039	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000348039	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000348039	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000348039	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000478260	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000478260	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-5UTR	ENST00000478260	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
intron-intron	ENST00000478260	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000528124	ENST00000382952		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000528124	ENST00000290921		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-5UTR	ENST00000528124	ENST00000510568		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
5UTR-intron	ENST00000528124	ENST00000515690		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	OSBPL5	chr11	3186446	-	CTBP1	chr4	1235307	-
In-frame	ENST00000393409	ENST00000381916		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000333602		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000428187		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000392400		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000316664		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000468819		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
In-frame	ENST00000251772	ENST00000381916		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000333602		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000428187		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000392400		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000316664		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000468819		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-3CDS	ENST00000505278	ENST00000381916		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000333602		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000428187		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000392400		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000316664		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000468819		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
Frame-shit	ENST00000592502	ENST00000507754		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000592502	ENST00000252576		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000592502	ENST00000503283		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000592502	ENST00000512771		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000592502	ENST00000428459		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000444249	ENST00000507754		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000444249	ENST00000252576		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000444249	ENST00000503283		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000444249	ENST00000512771		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000444249	ENST00000428459		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000415784	ENST00000507754		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000415784	ENST00000252576		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000415784	ENST00000503283		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000415784	ENST00000512771		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
5UTR-3CDS	ENST00000415784	ENST00000428459		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000586745	ENST00000507754		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000586745	ENST00000252576		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000586745	ENST00000503283		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000586745	ENST00000512771		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
intron-3CDS	ENST00000586745	ENST00000428459		TCGA	LD	SKCM	TCGA-D9-A6EA-06A	ZNF101	chr19	19779775	+	NDUFA13	chr19	19636991	+
Frame-shit	ENST00000464233	ENST00000402136		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
Frame-shit	ENST00000464233	ENST00000407315		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
Frame-shit	ENST00000464233	ENST00000402545		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
5CDS-intron	ENST00000464233	ENST00000497486		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000436010	ENST00000402136		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000436010	ENST00000407315		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000436010	ENST00000402545		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
5CDS-intron	ENST00000436010	ENST00000497486		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000495273	ENST00000402136		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000495273	ENST00000407315		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000495273	ENST00000402545		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
5CDS-intron	ENST00000495273	ENST00000497486		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000467549	ENST00000402136		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000467549	ENST00000407315		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
In-frame	ENST00000467549	ENST00000402545		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
5CDS-intron	ENST00000467549	ENST00000497486		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
intron-3CDS	ENST00000466906	ENST00000402136		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
intron-3CDS	ENST00000466906	ENST00000407315		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
intron-3CDS	ENST00000466906	ENST00000402545		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
intron-intron	ENST00000466906	ENST00000497486		TCGA	LD	SKCM	TCGA-D9-A6EC-06A	ROBO1	chr3	78763542	-	THAP4	chr2	242545892	-
Frame-shit	ENST00000412704	ENST00000263708		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000412704	ENST00000544261		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000412704	ENST00000460162		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
Frame-shit	ENST00000376887	ENST00000263708		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000376887	ENST00000544261		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000376887	ENST00000460162		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
Frame-shit	ENST00000536256	ENST00000263708		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000536256	ENST00000544261		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000536256	ENST00000460162		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
Frame-shit	ENST00000431522	ENST00000263708		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000431522	ENST00000544261		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000431522	ENST00000460162		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
Frame-shit	ENST00000538287	ENST00000263708		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000538287	ENST00000544261		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5CDS-intron	ENST00000538287	ENST00000460162		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
intron-3CDS	ENST00000474158	ENST00000263708		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
intron-intron	ENST00000474158	ENST00000544261		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
intron-intron	ENST00000474158	ENST00000460162		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	ABCC4	chr13	95953495	-	PTPN4	chr2	120684174	+
5UTR-3CDS	ENST00000296424	ENST00000226578		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	BDH2	chr4	104020940	-	MANBA	chr4	103595227	-
5UTR-3CDS	ENST00000296424	ENST00000505239		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	BDH2	chr4	104020940	-	MANBA	chr4	103595227	-
5UTR-intron	ENST00000400259	ENST00000539907		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000400259	ENST00000540617		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000400259	ENST00000374840		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000400259	ENST00000468526		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000400259	ENST00000374832		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000400259	ENST00000425315		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000400259	ENST00000374830		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000400259	ENST00000374829		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000344548	ENST00000539907		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000344548	ENST00000540617		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000344548	ENST00000374840		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000344548	ENST00000468526		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000344548	ENST00000374832		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000344548	ENST00000425315		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000344548	ENST00000374830		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000344548	ENST00000374829		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000315554	ENST00000539907		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000315554	ENST00000540617		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000315554	ENST00000374840		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000315554	ENST00000468526		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000315554	ENST00000374832		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000315554	ENST00000425315		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000315554	ENST00000374830		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000315554	ENST00000374829		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-intron	ENST00000498236	ENST00000539907		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-intron	ENST00000498236	ENST00000540617		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-5UTR	ENST00000498236	ENST00000374840		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-intron	ENST00000498236	ENST00000468526		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-5UTR	ENST00000498236	ENST00000374832		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-intron	ENST00000498236	ENST00000425315		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-intron	ENST00000498236	ENST00000374830		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
3UTR-intron	ENST00000498236	ENST00000374829		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000421089	ENST00000539907		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000421089	ENST00000540617		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000421089	ENST00000374840		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000421089	ENST00000468526		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-5UTR	ENST00000421089	ENST00000374832		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000421089	ENST00000425315		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000421089	ENST00000374830		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5UTR-intron	ENST00000421089	ENST00000374829		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	CDC42	chr1	22379235	+	ALPL	chr1	21880471	+
5CDS-intron	ENST00000471231	ENST00000539915		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000471231	ENST00000316491		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-3UTR	ENST00000471231	ENST00000531864		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000471231	ENST00000399681		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000471231	ENST00000398696		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000471231	ENST00000534369		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000338343	ENST00000539915		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000338343	ENST00000316491		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-3UTR	ENST00000338343	ENST00000531864		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000338343	ENST00000399681		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000338343	ENST00000398696		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000338343	ENST00000534369		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000562319	ENST00000539915		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000562319	ENST00000316491		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-3UTR	ENST00000562319	ENST00000531864		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000562319	ENST00000399681		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000562319	ENST00000398696		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000562319	ENST00000534369		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000380310	ENST00000539915		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000380310	ENST00000316491		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-3UTR	ENST00000380310	ENST00000531864		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000380310	ENST00000399681		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000380310	ENST00000398696		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000380310	ENST00000534369		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000565690	ENST00000539915		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000565690	ENST00000316491		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-3UTR	ENST00000565690	ENST00000531864		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000565690	ENST00000399681		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000565690	ENST00000398696		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
5CDS-intron	ENST00000565690	ENST00000534369		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	FBXL19	chr16	30941905	+	ZNF720	chr16	31803951	+
Frame-shit	ENST00000425019	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000425019	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000425019	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000425019	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000425019	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000324219	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000324219	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000324219	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000324219	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000324219	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000350198	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000350198	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000350198	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000350198	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000350198	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000302217	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000302217	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000302217	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000302217	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000302217	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000413150	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000413150	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000413150	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000413150	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000413150	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000347699	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000347699	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000347699	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000347699	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000347699	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000456652	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000456652	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000456652	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000456652	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
Frame-shit	ENST00000456652	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000350878	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000350878	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000350878	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000350878	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000350878	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000498066	ENST00000397601		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000498066	ENST00000343600		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000498066	ENST00000345429		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000498066	ENST00000376673		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
intron-3CDS	ENST00000498066	ENST00000445661		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	MAP4K4	chr2	102315000	+	MBNL2	chr13	98043576	+
In-frame	ENST00000336349	ENST00000265965		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
5CDS-3UTR	ENST00000336349	ENST00000528200		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000336349	ENST00000532265		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
5CDS-intron	ENST00000336349	ENST00000532212		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
intron-3CDS	ENST00000543776	ENST00000265965		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
intron-3UTR	ENST00000543776	ENST00000528200		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000543776	ENST00000532265		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
intron-intron	ENST00000543776	ENST00000532212		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SPTY2D1	chr11	18655745	-	SERGEF	chr11	17809960	-
Frame-shit	ENST00000456758	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
Frame-shit	ENST00000457378	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
Frame-shit	ENST00000389574	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
intron-3CDS	ENST00000452783	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
Frame-shit	ENST00000405266	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
Frame-shit	ENST00000401592	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
Frame-shit	ENST00000403868	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
Frame-shit	ENST00000425407	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
intron-3CDS	ENST00000469755	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
intron-3CDS	ENST00000413514	ENST00000264382		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	SUN1	chr7	883157	+	SI	chr3	164793800	-
5CDS-intron	ENST00000399537	ENST00000406451		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000401921		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000432645		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000441542		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000417496		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000476135		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000405010		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000428307		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000406072		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000456174		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000399537	ENST00000524023		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000406451		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000401921		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000432645		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000441542		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000417496		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000476135		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000405010		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000428307		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000406072		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000456174		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000430969	ENST00000524023		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000406451		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000401921		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000432645		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000441542		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000417496		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000476135		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000405010		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000428307		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000406072		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000456174		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
intron-intron	ENST00000399434	ENST00000524023		TCGA	LD	SKCM	TCGA-DA-A1HW-06A	TNRC18	chr7	5401528	-	HDAC9	chr7	18365135	+
5CDS-intron	ENST00000397410	ENST00000363840		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000397410	ENST00000365524		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000397410	ENST00000364822		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000397410	ENST00000363859		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000397410	ENST00000385578		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000397410	ENST00000363146		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000397410	ENST00000364084		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000363840		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000365524		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000364822		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000363859		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000385578		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000363146		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
5CDS-intron	ENST00000595465	ENST00000364084		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000363840		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000365524		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000364822		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000363859		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000385578		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000363146		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
intron-intron	ENST00000595879	ENST00000364084		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	AKAP8L	chr19	15507961	-	GAS5	chr1	173833644	-
In-frame	ENST00000421834	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000421834	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000421834	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000421834	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000421834	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000421834	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000421834	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000421834	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000370769	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000370769	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370769	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370769	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370769	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370769	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370769	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370769	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-3CDS	ENST00000312431	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-3CDS	ENST00000312431	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-intron	ENST00000312431	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-intron	ENST00000312431	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-intron	ENST00000312431	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-3UTR	ENST00000312431	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-3UTR	ENST00000312431	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
3UTR-3UTR	ENST00000312431	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000370754	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000370754	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370754	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370754	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370754	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370754	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370754	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370754	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000370788	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000370788	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370788	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370788	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000370788	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370788	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370788	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000370788	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000361203	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000361203	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000361203	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000361203	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000361203	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000361203	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000361203	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000361203	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000244364	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000244364	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000244364	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000244364	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000244364	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000244364	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000244364	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000244364	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000446842	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000446842	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000446842	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000446842	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-intron	ENST00000446842	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000446842	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000446842	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5CDS-3UTR	ENST00000446842	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-3CDS	ENST00000340834	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-3CDS	ENST00000340834	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-intron	ENST00000340834	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-intron	ENST00000340834	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-intron	ENST00000340834	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-3UTR	ENST00000340834	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-3UTR	ENST00000340834	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
5UTR-3UTR	ENST00000340834	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3CDS	ENST00000370765	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3CDS	ENST00000370765	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-intron	ENST00000370765	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-intron	ENST00000370765	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-intron	ENST00000370765	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3UTR	ENST00000370765	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3UTR	ENST00000370765	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3UTR	ENST00000370765	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3CDS	ENST00000518935	ENST00000514921		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3CDS	ENST00000518935	ENST00000274897		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-intron	ENST00000518935	ENST00000370877		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-intron	ENST00000518935	ENST00000509997		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-intron	ENST00000518935	ENST00000370876		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3UTR	ENST00000518935	ENST00000511744		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3UTR	ENST00000518935	ENST00000358276		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
intron-3UTR	ENST00000518935	ENST00000502396		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	DST	chr6	56371241	-	MLIP	chr6	53986245	+
In-frame	ENST00000251527	ENST00000356309		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
In-frame	ENST00000251527	ENST00000409423		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
In-frame	ENST00000251527	ENST00000275830		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
In-frame	ENST00000251527	ENST00000409339		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
In-frame	ENST00000251527	ENST00000449727		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
In-frame	ENST00000251527	ENST00000541468		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
5CDS-intron	ENST00000251527	ENST00000479022		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000497111	ENST00000356309		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000497111	ENST00000409423		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000497111	ENST00000275830		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000497111	ENST00000409339		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000497111	ENST00000449727		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000497111	ENST00000541468		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-intron	ENST00000497111	ENST00000479022		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000435514	ENST00000356309		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000435514	ENST00000409423		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000435514	ENST00000275830		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000435514	ENST00000409339		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000435514	ENST00000449727		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-3CDS	ENST00000435514	ENST00000541468		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
intron-intron	ENST00000435514	ENST00000479022		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ESYT2	chr7	158552177	-	NCAPG2	chr7	158451100	-
3UTR-3CDS	ENST00000441788	ENST00000456935		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
3UTR-3CDS	ENST00000441788	ENST00000221363		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
3UTR-5UTR	ENST00000441788	ENST00000495617		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
intron-3CDS	ENST00000313639	ENST00000456935		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
intron-3CDS	ENST00000313639	ENST00000221363		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
intron-5UTR	ENST00000313639	ENST00000495617		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
intron-3CDS	ENST00000395095	ENST00000456935		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
intron-3CDS	ENST00000395095	ENST00000221363		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
intron-5UTR	ENST00000395095	ENST00000495617		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	FZR1	chr19	3536974	+	MAN2B1	chr19	12768372	-
In-frame	ENST00000367328	ENST00000305784		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	PLEKHG1	chr6	151140910	+	DTYMK	chr2	242625292	-
5CDS-5UTR	ENST00000367328	ENST00000493095		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	PLEKHG1	chr6	151140910	+	DTYMK	chr2	242625292	-
In-frame	ENST00000358517	ENST00000305784		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	PLEKHG1	chr6	151140910	+	DTYMK	chr2	242625292	-
5CDS-5UTR	ENST00000358517	ENST00000493095		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	PLEKHG1	chr6	151140910	+	DTYMK	chr2	242625292	-
In-frame	ENST00000545664	ENST00000242776		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
In-frame	ENST00000545664	ENST00000592927		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
In-frame	ENST00000545664	ENST00000454233		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
In-frame	ENST00000269740	ENST00000242776		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
In-frame	ENST00000269740	ENST00000592927		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
In-frame	ENST00000269740	ENST00000454233		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
intron-3CDS	ENST00000455372	ENST00000242776		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
intron-3CDS	ENST00000455372	ENST00000592927		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
intron-3CDS	ENST00000455372	ENST00000454233		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
intron-3CDS	ENST00000590875	ENST00000242776		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
intron-3CDS	ENST00000590875	ENST00000592927		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
intron-3CDS	ENST00000590875	ENST00000454233		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	SLC39A3	chr19	2737046	-	DDX39A	chr19	14522410	-
5CDS-5UTR	ENST00000600335	ENST00000448587		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ZNF20	chr19	12250995	-	TINCR	chr19	5562222	-
5CDS-5UTR	ENST00000334213	ENST00000448587		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ZNF20	chr19	12250995	-	TINCR	chr19	5562222	-
intron-5UTR	ENST00000485451	ENST00000448587		TCGA	LD	SKCM	TCGA-DA-A1I0-06A	ZNF20	chr19	12250995	-	TINCR	chr19	5562222	-
5CDS-5UTR	ENST00000329286	ENST00000262120		TCGA	LD	SKCM	TCGA-DA-A1I4-06A	RAB12	chr18	8609951	+	TWSG1	chr18	9337191	+
5CDS-5UTR	ENST00000329286	ENST00000581641		TCGA	LD	SKCM	TCGA-DA-A1I4-06A	RAB12	chr18	8609951	+	TWSG1	chr18	9337191	+
In-frame	ENST00000216264	ENST00000381176		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	CERK	chr22	47115983	-	KIAA1644	chr22	44645565	-
5UTR-3CDS	ENST00000541677	ENST00000381176		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	CERK	chr22	47115983	-	KIAA1644	chr22	44645565	-
intron-3CDS	ENST00000471929	ENST00000381176		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	CERK	chr22	47115983	-	KIAA1644	chr22	44645565	-
5UTR-3CDS	ENST00000274341	ENST00000296591		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	HAPLN1	chr5	83016608	-	EDIL3	chr5	83239387	-
5UTR-3CDS	ENST00000274341	ENST00000380138		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	HAPLN1	chr5	83016608	-	EDIL3	chr5	83239387	-
5UTR-intron	ENST00000274341	ENST00000510271		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	HAPLN1	chr5	83016608	-	EDIL3	chr5	83239387	-
intron-3CDS	ENST00000514416	ENST00000296591		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	HAPLN1	chr5	83016608	-	EDIL3	chr5	83239387	-
intron-3CDS	ENST00000514416	ENST00000380138		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	HAPLN1	chr5	83016608	-	EDIL3	chr5	83239387	-
intron-intron	ENST00000514416	ENST00000510271		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	HAPLN1	chr5	83016608	-	EDIL3	chr5	83239387	-
5CDS-intron	ENST00000315614	ENST00000416426		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000315614	ENST00000284073		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000315614	ENST00000322684		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000315614	ENST00000442934		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000315614	ENST00000579180		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000315614	ENST00000579505		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000399464	ENST00000416426		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000399464	ENST00000284073		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000399464	ENST00000322684		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000399464	ENST00000442934		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000399464	ENST00000579180		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000399464	ENST00000579505		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000570460	ENST00000416426		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000570460	ENST00000284073		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000570460	ENST00000322684		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000570460	ENST00000442934		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000570460	ENST00000579180		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-intron	ENST00000570460	ENST00000579505		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5UTR-intron	ENST00000574120	ENST00000416426		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5UTR-intron	ENST00000574120	ENST00000284073		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5UTR-intron	ENST00000574120	ENST00000322684		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5UTR-intron	ENST00000574120	ENST00000442934		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5UTR-intron	ENST00000574120	ENST00000579180		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5UTR-intron	ENST00000574120	ENST00000579505		TCGA	LD	SKCM	TCGA-DA-A1I7-06A	NEURL4	chr17	7221107	-	MSI2	chr17	55509947	+
5CDS-5UTR	ENST00000403627	ENST00000255559		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000403627	ENST00000542342		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000403627	ENST00000579988		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000403627	ENST00000579732		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000405159	ENST00000255559		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000405159	ENST00000542342		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000405159	ENST00000579988		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000405159	ENST00000579732		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000583178	ENST00000255559		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000583178	ENST00000542342		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-intron	ENST00000583178	ENST00000579988		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000583178	ENST00000579732		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000580032	ENST00000255559		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000580032	ENST00000542342		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-intron	ENST00000580032	ENST00000579988		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
intron-5UTR	ENST00000580032	ENST00000579732		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000581110	ENST00000255559		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000581110	ENST00000542342		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000581110	ENST00000579988		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000581110	ENST00000579732		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000583024	ENST00000255559		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000583024	ENST00000542342		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-intron	ENST00000583024	ENST00000579988		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
5CDS-5UTR	ENST00000583024	ENST00000579732		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	FAM104A	chr17	71228225	-	SLC39A11	chr17	71084914	-
In-frame	ENST00000334464	ENST00000341276		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	PDZD8	chr10	119078383	-	ENO4	chr10	118615134	+
5CDS-intron	ENST00000334464	ENST00000409522		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	PDZD8	chr10	119078383	-	ENO4	chr10	118615134	+
5CDS-intron	ENST00000334464	ENST00000369207		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	PDZD8	chr10	119078383	-	ENO4	chr10	118615134	+
intron-3CDS	ENST00000482496	ENST00000341276		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	PDZD8	chr10	119078383	-	ENO4	chr10	118615134	+
intron-intron	ENST00000482496	ENST00000409522		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	PDZD8	chr10	119078383	-	ENO4	chr10	118615134	+
intron-intron	ENST00000482496	ENST00000369207		TCGA	LD	SKCM	TCGA-DA-A1I8-06A	PDZD8	chr10	119078383	-	ENO4	chr10	118615134	+
In-frame	ENST00000267102	ENST00000291386		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000267102	ENST00000359060		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
In-frame	ENST00000547382	ENST00000291386		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000547382	ENST00000359060		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
In-frame	ENST00000395141	ENST00000291386		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000395141	ENST00000359060		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
intron-3CDS	ENST00000553204	ENST00000291386		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
intron-intron	ENST00000553204	ENST00000359060		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	LMBR1L	chr12	49495033	-	SSU72	chr1	1480382	-
5UTR-3CDS	ENST00000468311	ENST00000359842		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	PFDN2	chr1	161087742	-	RXRG	chr1	165398203	-
5UTR-intron	ENST00000468311	ENST00000470566		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	PFDN2	chr1	161087742	-	RXRG	chr1	165398203	-
Frame-shit	ENST00000368010	ENST00000359842		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	PFDN2	chr1	161087742	-	RXRG	chr1	165398203	-
5CDS-intron	ENST00000368010	ENST00000470566		TCGA	LD	SKCM	TCGA-DA-A1IA-06A	PFDN2	chr1	161087742	-	RXRG	chr1	165398203	-
5CDS-intron	ENST00000294053	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000294053	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000294053	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000538039	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000538039	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000538039	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000437826	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000437826	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000437826	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000340729	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000340729	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000340729	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
intron-intron	ENST00000543042	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
intron-intron	ENST00000543042	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
intron-intron	ENST00000543042	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000445069	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000445069	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-intron	ENST00000445069	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
intron-intron	ENST00000538021	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
intron-intron	ENST00000538021	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
intron-intron	ENST00000538021	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5UTR-intron	ENST00000542555	ENST00000443149		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5UTR-intron	ENST00000542555	ENST00000399933		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5UTR-intron	ENST00000542555	ENST00000381461		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	CLPB	chr11	72141356	-	KIAA2026	chr9	5881675	-
5CDS-5UTR	ENST00000296684	ENST00000511206		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	NDUFS4	chr5	52954454	+	HMGCR	chr5	74638408	+
5CDS-5UTR	ENST00000296684	ENST00000287936		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	NDUFS4	chr5	52954454	+	HMGCR	chr5	74638408	+
5CDS-5UTR	ENST00000296684	ENST00000343975		TCGA	LD	SKCM	TCGA-DA-A3F3-06A	NDUFS4	chr5	52954454	+	HMGCR	chr5	74638408	+
5CDS-5UTR	ENST00000557943	ENST00000314852		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000557943	ENST00000403490		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000557943	ENST00000565349		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-5UTR	ENST00000433983	ENST00000314852		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000433983	ENST00000403490		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000433983	ENST00000565349		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-5UTR	ENST00000560726	ENST00000314852		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000560726	ENST00000403490		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000560726	ENST00000565349		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-5UTR	ENST00000559602	ENST00000314852		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000559602	ENST00000403490		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-intron	ENST00000559602	ENST00000565349		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5UTR-5UTR	ENST00000560816	ENST00000314852		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5UTR-intron	ENST00000560816	ENST00000403490		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5UTR-intron	ENST00000560816	ENST00000565349		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ETFA	chr15	76566753	-	IMP3	chr15	75932609	-
5CDS-5UTR	ENST00000290759	ENST00000560626		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ISL2	chr15	76629282	+	PEAK1	chr15	77474382	-
5CDS-5UTR	ENST00000290759	ENST00000558305		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ISL2	chr15	76629282	+	PEAK1	chr15	77474382	-
5CDS-intron	ENST00000290759	ENST00000567337		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ISL2	chr15	76629282	+	PEAK1	chr15	77474382	-
5CDS-5UTR	ENST00000290759	ENST00000312493		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	ISL2	chr15	76629282	+	PEAK1	chr15	77474382	-
5CDS-5UTR	ENST00000345330	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000345330	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000351217	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000351217	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000542234	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000542234	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000562924	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000562924	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000563691	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000563691	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000545878	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000545878	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000287226	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5CDS-5UTR	ENST00000287226	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5UTR-5UTR	ENST00000564551	ENST00000336216		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
5UTR-5UTR	ENST00000564551	ENST00000381714		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	NPTN	chr15	73925466	-	HMG20A	chr15	77750746	+
Frame-shit	ENST00000560626	ENST00000558012		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
Frame-shit	ENST00000560626	ENST00000267939		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
Frame-shit	ENST00000560626	ENST00000379595		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
Frame-shit	ENST00000560626	ENST00000559295		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
5CDS-intron	ENST00000560626	ENST00000557995		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000558305	ENST00000558012		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000558305	ENST00000267939		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000558305	ENST00000379595		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000558305	ENST00000559295		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-intron	ENST00000558305	ENST00000557995		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000567337	ENST00000558012		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000567337	ENST00000267939		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000567337	ENST00000379595		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-3CDS	ENST00000567337	ENST00000559295		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
intron-intron	ENST00000567337	ENST00000557995		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
In-frame	ENST00000312493	ENST00000558012		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
In-frame	ENST00000312493	ENST00000267939		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
In-frame	ENST00000312493	ENST00000379595		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
In-frame	ENST00000312493	ENST00000559295		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
5CDS-intron	ENST00000312493	ENST00000557995		TCGA	LD	SKCM	TCGA-DA-A3F5-06A	PEAK1	chr15	77471132	-	PSTPIP1	chr15	77317625	+
5UTR-intron	ENST00000064778	ENST00000441339		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000064778	ENST00000308946		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000064778	ENST00000535407		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-3UTR	ENST00000064778	ENST00000541137		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000450446	ENST00000441339		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000450446	ENST00000308946		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000450446	ENST00000535407		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-3UTR	ENST00000450446	ENST00000541137		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000356467	ENST00000441339		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000356467	ENST00000308946		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-intron	ENST00000356467	ENST00000535407		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5UTR-3UTR	ENST00000356467	ENST00000541137		TCGA	LD	SKCM	TCGA-DA-A95V-06A	FAM168A	chr11	73308968	-	MYEOV	chr11	69156278	+
5CDS-intron	ENST00000596019	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000596019	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000397162	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000397162	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000397165	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000397165	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000358523	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000358523	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5UTR-intron	ENST00000595736	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5UTR-intron	ENST00000595736	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000597972	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
intron-intron	ENST00000597972	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000593468	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5CDS-intron	ENST00000593468	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5UTR-intron	ENST00000599240	ENST00000594325		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5UTR-intron	ENST00000599240	ENST00000392386		TCGA	LD	SKCM	TCGA-DA-A95V-06A	ZNF682	chr19	20150152	-	CRLF1	chr19	18710656	-
5CDS-5UTR	ENST00000334528	ENST00000249647		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-intron	ENST00000334528	ENST00000566141		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000334528	ENST00000564153		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000334528	ENST00000349777		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000334528	ENST00000567094		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-intron	ENST00000334528	ENST00000397138		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000561249	ENST00000249647		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-intron	ENST00000561249	ENST00000566141		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000561249	ENST00000564153		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000561249	ENST00000349777		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000561249	ENST00000567094		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-intron	ENST00000561249	ENST00000397138		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000559047	ENST00000249647		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-intron	ENST00000559047	ENST00000566141		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000559047	ENST00000564153		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000559047	ENST00000349777		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-5UTR	ENST00000559047	ENST00000567094		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
5CDS-intron	ENST00000559047	ENST00000397138		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000558197	ENST00000249647		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-intron	ENST00000558197	ENST00000566141		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000558197	ENST00000564153		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000558197	ENST00000349777		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000558197	ENST00000567094		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-intron	ENST00000558197	ENST00000397138		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000559150	ENST00000249647		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-intron	ENST00000559150	ENST00000566141		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000559150	ENST00000564153		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000559150	ENST00000349777		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000559150	ENST00000567094		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-intron	ENST00000559150	ENST00000397138		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000320930	ENST00000249647		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-intron	ENST00000320930	ENST00000566141		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000320930	ENST00000564153		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000320930	ENST00000349777		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-5UTR	ENST00000320930	ENST00000567094		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-intron	ENST00000320930	ENST00000397138		TCGA	LD	SKCM	TCGA-DA-A95W-06A	FMN1	chr15	33256308	-	SNAP23	chr15	42804031	+
intron-3CDS	ENST00000419748	ENST00000441750		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15567918	-
intron-3CDS	ENST00000419748	ENST00000281513		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15567918	-
Frame-shit	ENST00000303236	ENST00000441750		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15567918	-
Frame-shit	ENST00000303236	ENST00000281513		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15567918	-
intron-3CDS	ENST00000470706	ENST00000441750		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15567918	-
intron-3CDS	ENST00000470706	ENST00000281513		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	EIF2AK3	chr2	88926485	-	NBAS	chr2	15567918	-
Frame-shit	ENST00000450904	ENST00000376217		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000450904	ENST00000315938		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000450904	ENST00000527489		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000362034	ENST00000376217		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
Frame-shit	ENST00000362034	ENST00000315938		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
5CDS-5UTR	ENST00000362034	ENST00000527489		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000567045	ENST00000376217		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
intron-3CDS	ENST00000567045	ENST00000315938		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
intron-5UTR	ENST00000567045	ENST00000527489		TCGA	LD	SKCM	TCGA-DA-A95Y-06A	MRPL21	chr11	68660358	-	GDPD4	chr11	76998465	-
In-frame	ENST00000205061	ENST00000309909		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
In-frame	ENST00000205061	ENST00000455858		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
5CDS-intron	ENST00000205061	ENST00000551773		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
In-frame	ENST00000422840	ENST00000309909		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
In-frame	ENST00000422840	ENST00000455858		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
5CDS-intron	ENST00000422840	ENST00000551773		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
In-frame	ENST00000447066	ENST00000309909		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
In-frame	ENST00000447066	ENST00000455858		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
5CDS-intron	ENST00000447066	ENST00000551773		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	GLG1	chr16	74506247	-	FBXW8	chr12	117383169	+
Frame-shit	ENST00000360239	ENST00000228284		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
Frame-shit	ENST00000360239	ENST00000431469		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000360239	ENST00000552221		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000360239	ENST00000546611		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
In-frame	ENST00000326495	ENST00000228284		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
In-frame	ENST00000326495	ENST00000431469		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000326495	ENST00000552221		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000326495	ENST00000546611		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
In-frame	ENST00000551165	ENST00000228284		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
In-frame	ENST00000551165	ENST00000431469		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000551165	ENST00000552221		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000551165	ENST00000546611		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
In-frame	ENST00000326470	ENST00000228284		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
In-frame	ENST00000326470	ENST00000431469		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000326470	ENST00000552221		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000326470	ENST00000546611		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
intron-3CDS	ENST00000546812	ENST00000228284		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
intron-3CDS	ENST00000546812	ENST00000431469		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
intron-intron	ENST00000546812	ENST00000552221		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
intron-intron	ENST00000546812	ENST00000546611		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	SSH1	chr12	109198832	-	SART3	chr12	108932865	-
5CDS-intron	ENST00000446827	ENST00000572173		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000446827	ENST00000572992		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000446827	ENST00000381820		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000446827	ENST00000312499		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000446827	ENST00000576027		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000425432	ENST00000572173		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000425432	ENST00000572992		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000425432	ENST00000381820		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000425432	ENST00000312499		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000425432	ENST00000576027		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000313565	ENST00000572173		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000313565	ENST00000572992		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000313565	ENST00000381820		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000313565	ENST00000312499		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000313565	ENST00000576027		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000564134	ENST00000572173		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000564134	ENST00000572992		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000564134	ENST00000381820		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000564134	ENST00000312499		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000564134	ENST00000576027		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000565601	ENST00000572173		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-3UTR	ENST00000565601	ENST00000572992		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000565601	ENST00000381820		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000565601	ENST00000312499		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5CDS-intron	ENST00000565601	ENST00000576027		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5UTR-intron	ENST00000564943	ENST00000572173		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5UTR-3UTR	ENST00000564943	ENST00000572992		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5UTR-intron	ENST00000564943	ENST00000381820		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5UTR-intron	ENST00000564943	ENST00000312499		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
5UTR-intron	ENST00000564943	ENST00000576027		TCGA	LD	SKCM	TCGA-EB-A1NK-01A	ZNF821	chr16	71913810	-	RMI2	chr16	11409998	+
In-frame	ENST00000545391	ENST00000357028		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
In-frame	ENST00000545391	ENST00000292035		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
5CDS-intron	ENST00000545391	ENST00000474263		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
In-frame	ENST00000361171	ENST00000357028		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
In-frame	ENST00000361171	ENST00000292035		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
5CDS-intron	ENST00000361171	ENST00000474263		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
In-frame	ENST00000436593	ENST00000357028		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
In-frame	ENST00000436593	ENST00000292035		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
5CDS-intron	ENST00000436593	ENST00000474263		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
intron-3CDS	ENST00000535766	ENST00000357028		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
intron-3CDS	ENST00000535766	ENST00000292035		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
intron-intron	ENST00000535766	ENST00000474263		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
intron-3CDS	ENST00000485886	ENST00000357028		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
intron-3CDS	ENST00000485886	ENST00000292035		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
intron-intron	ENST00000485886	ENST00000474263		TCGA	LD	SKCM	TCGA-EB-A24D-01A	MVB12B	chr9	129102909	+	MED27	chr9	134889854	-
In-frame	ENST00000403681	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000403681	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000403681	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000403681	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000541363	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000541363	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000541363	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000541363	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000393577	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000393577	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000393577	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000393577	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000393578	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000393578	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000393578	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000393578	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000425208	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000425208	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000425208	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000425208	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000536545	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000536545	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000536545	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000536545	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000354636	ENST00000418919		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000354636	ENST00000258145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
In-frame	ENST00000354636	ENST00000543646		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
5CDS-intron	ENST00000354636	ENST00000542058		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	HMGA2	chr12	66232349	+	GNS	chr12	65146537	-
intron-intron	ENST00000342228	ENST00000445145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000342228	ENST00000388767		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000342228	ENST00000345068		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000342228	ENST00000580212		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000342228	ENST00000456796		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000342228	ENST00000584969		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000342228	ENST00000577909		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000445145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000388767		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000345068		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000580212		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000456796		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000584969		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520262	ENST00000577909		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000445145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000388767		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000345068		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000580212		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000456796		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000584969		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000520179	ENST00000577909		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000445145		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000388767		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000345068		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000580212		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000456796		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000584969		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
intron-intron	ENST00000523340	ENST00000577909		TCGA	LD	SKCM	TCGA-EB-A3HV-01A	SLC20A2	chr8	42278757	-	CORO6	chr17	27943201	-
Frame-shit	ENST00000357702	ENST00000376113		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000346226		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000352848		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000393041		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000348750		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000357970		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000259238		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000393040		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000351659		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000316724		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000357702	ENST00000409400		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
5CDS-intron	ENST00000357702	ENST00000466111		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000376113		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000346226		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000352848		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000393041		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000348750		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000357970		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000259238		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000393040		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000351659		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000316724		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-3CDS	ENST00000259235	ENST00000409400		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
intron-intron	ENST00000259235	ENST00000466111		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000376113		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000346226		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000352848		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000393041		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000348750		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000357970		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000259238		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000393040		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000351659		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000316724		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000259234	ENST00000409400		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
5CDS-intron	ENST00000259234	ENST00000466111		TCGA	LD	SKCM	TCGA-EB-A3XC-01A	SAP130	chr2	128735559	-	BIN1	chr2	127834282	-
Frame-shit	ENST00000358465	ENST00000284142		TCGA	LD	SKCM	TCGA-EB-A3XE-01A	TRIM33	chr1	114973420	-	ASB17	chr1	76384843	-
Frame-shit	ENST00000369543	ENST00000284142		TCGA	LD	SKCM	TCGA-EB-A3XE-01A	TRIM33	chr1	114973420	-	ASB17	chr1	76384843	-
5UTR-3CDS	ENST00000450349	ENST00000284142		TCGA	LD	SKCM	TCGA-EB-A3XE-01A	TRIM33	chr1	114973420	-	ASB17	chr1	76384843	-
intron-3CDS	ENST00000476908	ENST00000284142		TCGA	LD	SKCM	TCGA-EB-A3XE-01A	TRIM33	chr1	114973420	-	ASB17	chr1	76384843	-
5CDS-3UTR	ENST00000353891	ENST00000351989		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000353891	ENST00000383024		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000353891	ENST00000407755		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000263200	ENST00000351989		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000263200	ENST00000383024		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000263200	ENST00000407755		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000427926	ENST00000351989		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000427926	ENST00000383024		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-3UTR	ENST00000427926	ENST00000407755		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
intron-3UTR	ENST00000442042	ENST00000351989		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
intron-3UTR	ENST00000442042	ENST00000383024		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
intron-3UTR	ENST00000442042	ENST00000407755		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	CLTCL1	chr22	19279123	-	DGCR8	chr22	20098909	+
5CDS-intron	ENST00000367261	ENST00000367689		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000357444		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000251507		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000325589		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000367686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000367687		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000347255		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000489615		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000478442		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000486220		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000392064		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367261	ENST00000367688		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000367689		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000357444		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000251507		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000325589		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000367686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000367687		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000347255		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000489615		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000478442		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000486220		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000392064		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000367259	ENST00000367688		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000367689		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000357444		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000251507		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000325589		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000367686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000367687		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000347255		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000489615		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000478442		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000486220		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000392064		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5CDS-intron	ENST00000435533	ENST00000367688		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	KLHL12	chr1	202878138	-	RABGAP1L	chr1	174606513	+
5UTR-3CDS	ENST00000355630	ENST00000359373		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000495878		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000455638		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000393605		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000334211		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000393609		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000426523		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000355630	ENST00000429686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-3CDS	ENST00000396617	ENST00000359373		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000495878		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000455638		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000393605		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000334211		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000393609		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000426523		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000396617	ENST00000429686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-3CDS	ENST00000402042	ENST00000359373		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000495878		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000455638		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000393605		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000334211		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000393609		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000426523		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000402042	ENST00000429686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-3CDS	ENST00000466278	ENST00000359373		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000495878		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000455638		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000393605		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000334211		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000393609		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000426523		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
5UTR-intron	ENST00000466278	ENST00000429686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-3CDS	ENST00000407029	ENST00000359373		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000495878		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000455638		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000393605		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000334211		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000393609		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000426523		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000407029	ENST00000429686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-3CDS	ENST00000402630	ENST00000359373		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000495878		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000455638		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000393605		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000334211		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000393609		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000426523		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
intron-intron	ENST00000402630	ENST00000429686		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	MKL1	chr22	40990678	-	ARAP1	chr11	72418419	-
In-frame	ENST00000216038	ENST00000333407		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5CDS-intron	ENST00000216038	ENST00000488874		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5CDS-intron	ENST00000216038	ENST00000473717		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
Frame-shit	ENST00000451746	ENST00000333407		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5CDS-intron	ENST00000451746	ENST00000488874		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5CDS-intron	ENST00000451746	ENST00000473717		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5UTR-3CDS	ENST00000476619	ENST00000333407		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5UTR-intron	ENST00000476619	ENST00000488874		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
5UTR-intron	ENST00000476619	ENST00000473717		TCGA	LD	SKCM	TCGA-EB-A3Y6-01A	RTCB	chr22	32802649	-	FAM83F	chr22	40425520	+
Frame-shit	ENST00000290949	ENST00000565263		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
Frame-shit	ENST00000290949	ENST00000358896		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
Frame-shit	ENST00000290949	ENST00000432752		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
Frame-shit	ENST00000540149	ENST00000565263		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
Frame-shit	ENST00000540149	ENST00000358896		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
Frame-shit	ENST00000540149	ENST00000432752		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
intron-3CDS	ENST00000602876	ENST00000565263		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
intron-3CDS	ENST00000602876	ENST00000358896		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
intron-3CDS	ENST00000602876	ENST00000432752		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
intron-3CDS	ENST00000567694	ENST00000565263		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
intron-3CDS	ENST00000567694	ENST00000358896		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
intron-3CDS	ENST00000567694	ENST00000432752		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	ATP6V0D1	chr16	67514860	-	DUS2	chr16	68104041	+
5CDS-3UTR	ENST00000565263	ENST00000567684		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	DUS2	chr16	68105011	+	HSD11B2	chr16	67470152	+
5CDS-3UTR	ENST00000565263	ENST00000326152		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	DUS2	chr16	68105011	+	HSD11B2	chr16	67470152	+
5CDS-3UTR	ENST00000358896	ENST00000567684		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	DUS2	chr16	68105011	+	HSD11B2	chr16	67470152	+
5CDS-3UTR	ENST00000358896	ENST00000326152		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	DUS2	chr16	68105011	+	HSD11B2	chr16	67470152	+
5CDS-3UTR	ENST00000432752	ENST00000567684		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	DUS2	chr16	68105011	+	HSD11B2	chr16	67470152	+
5CDS-3UTR	ENST00000432752	ENST00000326152		TCGA	LD	SKCM	TCGA-EB-A3Y7-01A	DUS2	chr16	68105011	+	HSD11B2	chr16	67470152	+
Frame-shit	ENST00000328257	ENST00000356136		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
Frame-shit	ENST00000328257	ENST00000528420		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000328257	ENST00000533454		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000328257	ENST00000531818		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000328257	ENST00000532130		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000328257	ENST00000539288		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000328257	ENST00000525872		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000328257	ENST00000538870		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
Frame-shit	ENST00000398427	ENST00000356136		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
Frame-shit	ENST00000398427	ENST00000528420		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000398427	ENST00000533454		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000398427	ENST00000531818		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000398427	ENST00000532130		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-5UTR	ENST00000398427	ENST00000539288		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000398427	ENST00000525872		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
5CDS-intron	ENST00000398427	ENST00000538870		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-3CDS	ENST00000542710	ENST00000356136		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-3CDS	ENST00000542710	ENST00000528420		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-5UTR	ENST00000542710	ENST00000533454		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-5UTR	ENST00000542710	ENST00000531818		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-5UTR	ENST00000542710	ENST00000532130		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-5UTR	ENST00000542710	ENST00000539288		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-intron	ENST00000542710	ENST00000525872		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
3UTR-intron	ENST00000542710	ENST00000538870		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000543525	ENST00000356136		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-3CDS	ENST00000543525	ENST00000528420		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000543525	ENST00000533454		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000543525	ENST00000531818		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000543525	ENST00000532130		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-5UTR	ENST00000543525	ENST00000539288		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000543525	ENST00000525872		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
intron-intron	ENST00000543525	ENST00000538870		TCGA	LD	SKCM	TCGA-EB-A41B-01A	PPME1	chr11	73915490	+	UVRAG	chr11	75715049	+
Frame-shit	ENST00000388890	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
5CDS-intron	ENST00000388890	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
Frame-shit	ENST00000323510	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
5CDS-intron	ENST00000323510	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
Frame-shit	ENST00000483173	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
5CDS-intron	ENST00000483173	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
Frame-shit	ENST00000467963	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
5CDS-intron	ENST00000467963	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
Frame-shit	ENST00000435709	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
5CDS-intron	ENST00000435709	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
intron-3CDS	ENST00000494422	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
intron-intron	ENST00000494422	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A42Y-01A	BRD9	chr5	889136	-	OSMR	chr5	38903984	+
In-frame	ENST00000389629	ENST00000566442		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	RTF1	chr15	41768017	+	GANC	chr15	42579889	+
In-frame	ENST00000389629	ENST00000318010		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	RTF1	chr15	41768017	+	GANC	chr15	42579889	+
5CDS-intron	ENST00000389629	ENST00000440615		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	RTF1	chr15	41768017	+	GANC	chr15	42579889	+
intron-3CDS	ENST00000462276	ENST00000566442		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	RTF1	chr15	41768017	+	GANC	chr15	42579889	+
intron-3CDS	ENST00000462276	ENST00000318010		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	RTF1	chr15	41768017	+	GANC	chr15	42579889	+
intron-intron	ENST00000462276	ENST00000440615		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	RTF1	chr15	41768017	+	GANC	chr15	42579889	+
intron-intron	ENST00000376957	ENST00000588427		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000436106		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000588871		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000427685		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000588849		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000586564		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000592872		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000585675		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
intron-intron	ENST00000376957	ENST00000591027		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	SRM	chr1	11115130	-	C19orf25	chr19	1479555	-
5CDS-3UTR	ENST00000367455	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367455	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367455	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367455	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367455	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000367454	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367454	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367454	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367454	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367454	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000367451	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367451	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367451	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367451	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367451	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000367448	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367448	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367448	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367448	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367448	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000367449	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367449	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367449	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367449	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367449	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000367452	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367452	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367452	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367452	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000367452	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000530098	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000530098	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000530098	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000530098	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
5CDS-intron	ENST00000530098	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
intron-3UTR	ENST00000483156	ENST00000438568		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
intron-intron	ENST00000483156	ENST00000369054		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
intron-intron	ENST00000483156	ENST00000369064		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
intron-intron	ENST00000483156	ENST00000606933		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
intron-intron	ENST00000483156	ENST00000463555		TCGA	LD	SKCM	TCGA-EB-A42Z-01A	UCHL5	chr1	192990227	-	TARS2	chr1	150468958	+
intron-3CDS	ENST00000414007	ENST00000337137		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000414007	ENST00000380995		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000414007	ENST00000407381		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-intron	ENST00000414007	ENST00000355704		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-3UTR	ENST00000414007	ENST00000472791		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000414007	ENST00000406733		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-3CDS	ENST00000419187	ENST00000337137		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000419187	ENST00000380995		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000419187	ENST00000407381		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-intron	ENST00000419187	ENST00000355704		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-3UTR	ENST00000419187	ENST00000472791		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000419187	ENST00000406733		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-3CDS	ENST00000471256	ENST00000337137		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000471256	ENST00000380995		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000471256	ENST00000407381		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-intron	ENST00000471256	ENST00000355704		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-3UTR	ENST00000471256	ENST00000472791		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
intron-5UTR	ENST00000471256	ENST00000406733		TCGA	LD	SKCM	TCGA-EB-A431-01A	SRGAP2	chr1	206135293	+	TBC1D22A	chr22	47188417	+
5CDS-5UTR	ENST00000261560	ENST00000263377		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000261560	ENST00000371835		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000261560	ENST00000360016		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-intron	ENST00000261560	ENST00000602230		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000599548	ENST00000263377		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000599548	ENST00000371835		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000599548	ENST00000360016		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-intron	ENST00000599548	ENST00000602230		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000595401	ENST00000263377		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000595401	ENST00000371835		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000595401	ENST00000360016		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-intron	ENST00000595401	ENST00000602230		TCGA	LD	SKCM	TCGA-EB-A44O-01A	ZNF430	chr19	21216990	+	BRD4	chr19	15383944	-
5CDS-5UTR	ENST00000377069	ENST00000526639		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000377069	ENST00000527158		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000377069	ENST00000412157		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000377069	ENST00000350887		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-5UTR	ENST00000542973	ENST00000526639		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-intron	ENST00000542973	ENST00000527158		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-intron	ENST00000542973	ENST00000412157		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-intron	ENST00000542973	ENST00000350887		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-5UTR	ENST00000377071	ENST00000526639		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000377071	ENST00000527158		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000377071	ENST00000412157		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000377071	ENST00000350887		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-5UTR	ENST00000536437	ENST00000526639		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000536437	ENST00000527158		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000536437	ENST00000412157		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000536437	ENST00000350887		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-5UTR	ENST00000538046	ENST00000526639		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-intron	ENST00000538046	ENST00000527158		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-intron	ENST00000538046	ENST00000412157		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
intron-intron	ENST00000538046	ENST00000350887		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-5UTR	ENST00000543852	ENST00000526639		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000543852	ENST00000527158		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000543852	ENST00000412157		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000543852	ENST00000350887		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	KDM2B	chr12	121970711	-	SNRNP35	chr12	123942568	+
5CDS-intron	ENST00000352241	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-intron	ENST00000352241	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-5UTR	ENST00000352241	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-intron	ENST00000352241	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-intron	ENST00000448226	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-intron	ENST00000448226	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-5UTR	ENST00000448226	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-intron	ENST00000448226	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000472437	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000472437	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000472437	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000472437	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000328528	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000328528	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000328528	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000328528	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000314589	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000314589	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000314589	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000314589	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394355	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394355	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000394355	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394355	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000314557	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000314557	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000314557	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000314557	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394351	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394351	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000394351	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394351	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000531774	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000531774	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000531774	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000531774	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394348	ENST00000398540		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394348	ENST00000542259		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000394348	ENST00000497757		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000394348	ENST00000478263		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	MITF	chr3	69788852	+	FRMD4B	chr3	69481912	-
5CDS-5UTR	ENST00000317775	ENST00000536769		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000317775	ENST00000538617		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000317775	ENST00000546120		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000317775	ENST00000339647		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-intron	ENST00000317775	ENST00000536661		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000344089	ENST00000536769		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000344089	ENST00000538617		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000344089	ENST00000546120		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000344089	ENST00000339647		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
3UTR-intron	ENST00000344089	ENST00000536661		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000338101	ENST00000536769		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000338101	ENST00000538617		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000338101	ENST00000546120		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000338101	ENST00000339647		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
5CDS-intron	ENST00000338101	ENST00000536661		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
intron-5UTR	ENST00000549189	ENST00000536769		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
intron-5UTR	ENST00000549189	ENST00000538617		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
intron-5UTR	ENST00000549189	ENST00000546120		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
intron-5UTR	ENST00000549189	ENST00000339647		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
intron-intron	ENST00000549189	ENST00000536661		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	NOS1	chr12	117723046	-	UBC	chr12	125398320	-
intron-intron	ENST00000413953	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
5UTR-intron	ENST00000347140	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
intron-intron	ENST00000358907	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
5UTR-intron	ENST00000402412	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
intron-intron	ENST00000441731	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
intron-intron	ENST00000403821	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
intron-intron	ENST00000546843	ENST00000296682		TCGA	LD	SKCM	TCGA-EB-A44Q-06A	R3HDM2	chr12	57824503	-	PRDM9	chr5	23493580	+
intron-intron	ENST00000322611	ENST00000507936		TCGA	LD	SKCM	TCGA-EB-A44R-06A	BASP1	chr5	17089270	+	C5orf17	chr5	24177946	+
5CDS-3UTR	ENST00000340611	ENST00000607545		TCGA	LD	SKCM	TCGA-EB-A44R-06A	BRAT1	chr7	2593939	-	GUSBP1	chr5	21459787	+
intron-3UTR	ENST00000473879	ENST00000607545		TCGA	LD	SKCM	TCGA-EB-A44R-06A	BRAT1	chr7	2593939	-	GUSBP1	chr5	21459787	+
5UTR-intron	ENST00000382496	ENST00000322611		TCGA	LD	SKCM	TCGA-EB-A44R-06A	SEMA5A	chr5	9545696	-	BASP1	chr5	17089182	+
Frame-shit	ENST00000227756	ENST00000376048		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000311066		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000235372		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000502727		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000413440		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000343137		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000503842		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5CDS-intron	ENST00000227756	ENST00000505823		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-3CDS	ENST00000526064	ENST00000376048		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000311066		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000235372		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000502727		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000413440		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000343137		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000503842		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
5UTR-intron	ENST00000526064	ENST00000505823		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	GALNT18	chr11	11642906	-	PRDM2	chr1	14142922	+
In-frame	ENST00000262302	ENST00000331483		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5CDS-intron	ENST00000262302	ENST00000576390		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5CDS-intron	ENST00000262302	ENST00000439918		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5CDS-5UTR	ENST00000262302	ENST00000472244		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-3CDS	ENST00000565987	ENST00000331483		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-intron	ENST00000565987	ENST00000576390		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-intron	ENST00000565987	ENST00000439918		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-5UTR	ENST00000565987	ENST00000472244		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-3CDS	ENST00000543305	ENST00000331483		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-intron	ENST00000543305	ENST00000576390		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-intron	ENST00000543305	ENST00000439918		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-5UTR	ENST00000543305	ENST00000472244		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
In-frame	ENST00000565134	ENST00000331483		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5CDS-intron	ENST00000565134	ENST00000576390		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5CDS-intron	ENST00000565134	ENST00000439918		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5CDS-5UTR	ENST00000565134	ENST00000472244		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-3CDS	ENST00000568706	ENST00000331483		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-intron	ENST00000568706	ENST00000576390		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-intron	ENST00000568706	ENST00000439918		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-5UTR	ENST00000568706	ENST00000472244		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-3CDS	ENST00000568610	ENST00000331483		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-intron	ENST00000568610	ENST00000576390		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-intron	ENST00000568610	ENST00000439918		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
intron-5UTR	ENST00000568610	ENST00000472244		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	NUBP2	chr16	1833037	+	P4HB	chr17	79813462	-
5UTR-intron	ENST00000357710	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000357710	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000324501	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000324501	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000344094	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000344094	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000261970	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000261970	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000394164	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000394164	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000557511	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000557511	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000406768	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
intron-intron	ENST00000406768	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000394157	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-intron	ENST00000394157	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
3UTR-intron	ENST00000553447	ENST00000392876		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
3UTR-intron	ENST00000553447	ENST00000465502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	PSEN1	chr14	73603291	+	NT5DC3	chr12	104165107	-
5UTR-5UTR	ENST00000329565	ENST00000573319		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	SNN	chr16	11762396	+	BCAR4	chr16	11914154	-
5UTR-intron	ENST00000227495	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000227495	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000227495	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000227495	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000227495	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000227495	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000444328	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000444328	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000444328	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000444328	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000444328	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000444328	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000356132	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000356132	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000356132	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000356132	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000356132	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5UTR-intron	ENST00000356132	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000530591	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000530591	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000530591	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000530591	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000530591	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000530591	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534083	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534083	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534083	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534083	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534083	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534083	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000392669	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000392669	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000392669	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000392669	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000392669	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000392669	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526756	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526756	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526756	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526756	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526756	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526756	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526727	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526727	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526727	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526727	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526727	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000526727	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000449406	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000449406	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000449406	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000449406	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000449406	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000449406	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000532243	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000532243	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000532243	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000532243	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000532243	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000532243	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534457	ENST00000541502		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534457	ENST00000409404		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534457	ENST00000298047		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534457	ENST00000525166		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534457	ENST00000533797		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
intron-intron	ENST00000534457	ENST00000489716		TCGA	LD	SKCM	TCGA-EB-A4OY-01A	ST3GAL4	chr11	126225737	+	FAT3	chr11	92564788	+
5CDS-5UTR	ENST00000349995	ENST00000498485		TCGA	LD	SKCM	TCGA-EB-A4OZ-01A	COG3	chr13	46039345	+	PSMB7	chr9	127119194	-
5CDS-5UTR	ENST00000349995	ENST00000259457		TCGA	LD	SKCM	TCGA-EB-A4OZ-01A	COG3	chr13	46039345	+	PSMB7	chr9	127119194	-
5CDS-3UTR	ENST00000349995	ENST00000536392		TCGA	LD	SKCM	TCGA-EB-A4OZ-01A	COG3	chr13	46039345	+	PSMB7	chr9	127119194	-
intron-5UTR	ENST00000465942	ENST00000498485		TCGA	LD	SKCM	TCGA-EB-A4OZ-01A	COG3	chr13	46039345	+	PSMB7	chr9	127119194	-
intron-5UTR	ENST00000465942	ENST00000259457		TCGA	LD	SKCM	TCGA-EB-A4OZ-01A	COG3	chr13	46039345	+	PSMB7	chr9	127119194	-
intron-3UTR	ENST00000465942	ENST00000536392		TCGA	LD	SKCM	TCGA-EB-A4OZ-01A	COG3	chr13	46039345	+	PSMB7	chr9	127119194	-
Frame-shit	ENST00000534358	ENST00000313732		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
Frame-shit	ENST00000534358	ENST00000564466		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
5CDS-5UTR	ENST00000534358	ENST00000569488		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
Frame-shit	ENST00000389506	ENST00000313732		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
Frame-shit	ENST00000389506	ENST00000564466		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
5CDS-5UTR	ENST00000389506	ENST00000569488		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
Frame-shit	ENST00000354520	ENST00000313732		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
Frame-shit	ENST00000354520	ENST00000564466		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
5CDS-5UTR	ENST00000354520	ENST00000569488		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
intron-3CDS	ENST00000420751	ENST00000313732		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
intron-3CDS	ENST00000420751	ENST00000564466		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
intron-5UTR	ENST00000420751	ENST00000569488		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	KMT2A	chr11	118307659	+	ZDHHC7	chr16	85010831	-
intron-3CDS	ENST00000546136	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000546136	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000546136	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000546136	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000546136	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000381381	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000381381	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000381381	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000381381	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000381381	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000309359	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000309359	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000309359	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000309359	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000309359	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000451604	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000451604	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000451604	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000451604	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000451604	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
Frame-shit	ENST00000537393	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-5UTR	ENST00000537393	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-5UTR	ENST00000537393	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-5UTR	ENST00000537393	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-intron	ENST00000537393	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000541536	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000541536	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000541536	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000541536	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000541536	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000396007	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000396007	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000396007	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000396007	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000396007	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000545921	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000545921	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000545921	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000545921	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000545921	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000541847	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000541847	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000541847	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000541847	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000541847	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
Frame-shit	ENST00000441133	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-5UTR	ENST00000441133	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-5UTR	ENST00000441133	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-5UTR	ENST00000441133	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
5CDS-intron	ENST00000441133	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-3CDS	ENST00000536850	ENST00000262940		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000536850	ENST00000461209		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000536850	ENST00000449970		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-5UTR	ENST00000536850	ENST00000462172		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
intron-intron	ENST00000536850	ENST00000521822		TCGA	LD	SKCM	TCGA-EB-A4XL-01A	SOX5	chr12	24048832	-	RASA4	chr7	102251589	-
Frame-shit	ENST00000585892	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-5UTR	ENST00000585892	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
Frame-shit	ENST00000314646	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-5UTR	ENST00000314646	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
Frame-shit	ENST00000359692	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-5UTR	ENST00000359692	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
Frame-shit	ENST00000389253	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-5UTR	ENST00000389253	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
Frame-shit	ENST00000355667	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-5UTR	ENST00000355667	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
Frame-shit	ENST00000408974	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-5UTR	ENST00000408974	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
intron-3CDS	ENST00000591819	ENST00000403903		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
intron-5UTR	ENST00000591819	ENST00000403352		TCGA	LD	SKCM	TCGA-EB-A550-01A	DNM2	chr19	10829079	+	ZGLP1	chr19	10419226	-
5CDS-intron	ENST00000352385	ENST00000318663		TCGA	LD	SKCM	TCGA-EB-A551-01A	IGDCC4	chr15	65693144	-	ORAI3	chr16	30967521	+
5CDS-intron	ENST00000352385	ENST00000566237		TCGA	LD	SKCM	TCGA-EB-A551-01A	IGDCC4	chr15	65693144	-	ORAI3	chr16	30967521	+
5CDS-intron	ENST00000352385	ENST00000562699		TCGA	LD	SKCM	TCGA-EB-A551-01A	IGDCC4	chr15	65693144	-	ORAI3	chr16	30967521	+
intron-intron	ENST00000558048	ENST00000318663		TCGA	LD	SKCM	TCGA-EB-A551-01A	IGDCC4	chr15	65693144	-	ORAI3	chr16	30967521	+
intron-intron	ENST00000558048	ENST00000566237		TCGA	LD	SKCM	TCGA-EB-A551-01A	IGDCC4	chr15	65693144	-	ORAI3	chr16	30967521	+
intron-intron	ENST00000558048	ENST00000562699		TCGA	LD	SKCM	TCGA-EB-A551-01A	IGDCC4	chr15	65693144	-	ORAI3	chr16	30967521	+
In-frame	ENST00000316286	ENST00000413817		TCGA	LD	SKCM	TCGA-EB-A551-01A	ZNF786	chr7	148771478	-	DENND6B	chr22	50757432	-
Frame-shit	ENST00000491431	ENST00000413817		TCGA	LD	SKCM	TCGA-EB-A551-01A	ZNF786	chr7	148771478	-	DENND6B	chr22	50757432	-
Frame-shit	ENST00000451334	ENST00000413817		TCGA	LD	SKCM	TCGA-EB-A551-01A	ZNF786	chr7	148771478	-	DENND6B	chr22	50757432	-
In-frame	ENST00000375735	ENST00000281038		TCGA	LD	SKCM	TCGA-EB-A57M-01A	DYNC2H1	chr11	102988592	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000375735	ENST00000528850		TCGA	LD	SKCM	TCGA-EB-A57M-01A	DYNC2H1	chr11	102988592	+	NARS2	chr11	78239982	-
In-frame	ENST00000334267	ENST00000281038		TCGA	LD	SKCM	TCGA-EB-A57M-01A	DYNC2H1	chr11	102988592	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000334267	ENST00000528850		TCGA	LD	SKCM	TCGA-EB-A57M-01A	DYNC2H1	chr11	102988592	+	NARS2	chr11	78239982	-
In-frame	ENST00000398093	ENST00000281038		TCGA	LD	SKCM	TCGA-EB-A57M-01A	DYNC2H1	chr11	102988592	+	NARS2	chr11	78239982	-
5CDS-5UTR	ENST00000398093	ENST00000528850		TCGA	LD	SKCM	TCGA-EB-A57M-01A	DYNC2H1	chr11	102988592	+	NARS2	chr11	78239982	-
5UTR-3CDS	ENST00000361682	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000361682	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000361682	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-intron	ENST00000361682	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000403184	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000403184	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000403184	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-intron	ENST00000403184	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000403710	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000403710	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000403710	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-intron	ENST00000403710	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000407537	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000407537	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-3CDS	ENST00000407537	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
5UTR-intron	ENST00000407537	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000406520	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000406520	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000406520	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-intron	ENST00000406520	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000449653	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000449653	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000449653	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-intron	ENST00000449653	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000493893	ENST00000334554		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000493893	ENST00000320602		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-3CDS	ENST00000493893	ENST00000405930		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
intron-intron	ENST00000493893	ENST00000468112		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	COMT	chr22	19929420	+	ZDHHC8	chr22	20126717	+
Frame-shit	ENST00000407464	ENST00000379516		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
5CDS-5UTR	ENST00000407464	ENST00000514949		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
5CDS-intron	ENST00000407464	ENST00000510372		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
Frame-shit	ENST00000407598	ENST00000379516		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
5CDS-5UTR	ENST00000407598	ENST00000514949		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
5CDS-intron	ENST00000407598	ENST00000510372		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
Frame-shit	ENST00000443632	ENST00000379516		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
5CDS-5UTR	ENST00000443632	ENST00000514949		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
5CDS-intron	ENST00000443632	ENST00000510372		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HIC2	chr22	21797146	+	SNX2	chr5	122130961	+
In-frame	ENST00000503427	ENST00000438793		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
In-frame	ENST00000503427	ENST00000346918		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-5UTR	ENST00000503427	ENST00000379787		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-5UTR	ENST00000503427	ENST00000348126		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-5UTR	ENST00000503427	ENST00000304400		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-intron	ENST00000503427	ENST00000274392		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-intron	ENST00000503427	ENST00000455264		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-intron	ENST00000503427	ENST00000513648		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
In-frame	ENST00000502717	ENST00000438793		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
In-frame	ENST00000502717	ENST00000346918		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-5UTR	ENST00000502717	ENST00000379787		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-5UTR	ENST00000502717	ENST00000348126		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-5UTR	ENST00000502717	ENST00000304400		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-intron	ENST00000502717	ENST00000274392		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-intron	ENST00000502717	ENST00000455264		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
5CDS-intron	ENST00000502717	ENST00000513648		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	HMGXB3	chr5	149386210	+	PAM	chr5	102237060	+
intron-3CDS	ENST00000405409	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000405409	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000405409	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000405409	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000405409	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000405409	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000405409	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000405409	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000414461	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000414461	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000414461	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000414461	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000414461	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000414461	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000414461	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000414461	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000449924	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000449924	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000449924	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000449924	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000449924	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000449924	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000449924	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000449924	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000262829	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000262829	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000262829	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000262829	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000262829	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000262829	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000262829	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000262829	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000397303	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000397303	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000397303	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000397303	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000397303	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000397303	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000397303	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000397303	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000359369	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000359369	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000359369	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000359369	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000359369	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000359369	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000359369	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000359369	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000416721	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-3CDS	ENST00000416721	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000416721	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000416721	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000416721	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000416721	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000416721	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
intron-intron	ENST00000416721	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
In-frame	ENST00000438146	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
In-frame	ENST00000438146	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000438146	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000438146	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000438146	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000438146	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000438146	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5CDS-intron	ENST00000438146	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	RBFOX2	chr22	36424288	-	MED15	chr22	20905723	+
5UTR-3CDS	ENST00000382496	ENST00000405409		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000414461		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000449924		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000262829		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000397303		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000359369		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000416721		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
5UTR-3CDS	ENST00000382496	ENST00000438146		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SEMA5A	chr5	9545696	-	RBFOX2	chr22	36157515	-
In-frame	ENST00000437398	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
In-frame	ENST00000437398	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000437398	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000437398	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000437398	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000437398	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000437398	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000437398	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
In-frame	ENST00000314328	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
In-frame	ENST00000314328	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000314328	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000314328	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000314328	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000314328	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000314328	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000314328	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
In-frame	ENST00000541492	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
In-frame	ENST00000541492	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000541492	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000541492	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000541492	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000541492	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000541492	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
5CDS-intron	ENST00000541492	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-3CDS	ENST00000416735	ENST00000425759		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-3CDS	ENST00000416735	ENST00000292733		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-intron	ENST00000416735	ENST00000542773		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-intron	ENST00000416735	ENST00000263205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-intron	ENST00000416735	ENST00000406969		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-intron	ENST00000416735	ENST00000382974		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-intron	ENST00000416735	ENST00000541476		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
intron-intron	ENST00000416735	ENST00000478831		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	SPECC1L	chr22	24808675	+	MED15	chr22	20905723	+
In-frame	ENST00000502346	ENST00000326685		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
In-frame	ENST00000502346	ENST00000356541		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
In-frame	ENST00000502346	ENST00000309868		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
In-frame	ENST00000502346	ENST00000506113		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
In-frame	ENST00000502346	ENST00000504238		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
In-frame	ENST00000502346	ENST00000508983		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5CDS-intron	ENST00000502346	ENST00000517451		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5CDS-intron	ENST00000502346	ENST00000519549		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000326685		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000356541		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000309868		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000506113		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000504238		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-3CDS	ENST00000511450	ENST00000508983		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-intron	ENST00000511450	ENST00000517451		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5UTR-intron	ENST00000511450	ENST00000519549		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	ABLIM3	chr5	148596522	+
5CDS-5UTR	ENST00000502346	ENST00000230792		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	NUDT12	chr5	102895955	-
5CDS-5UTR	ENST00000502346	ENST00000507423		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	NUDT12	chr5	102895955	-
5CDS-intron	ENST00000502346	ENST00000515407		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	NUDT12	chr5	102895955	-
5UTR-5UTR	ENST00000511450	ENST00000230792		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	NUDT12	chr5	102895955	-
5UTR-5UTR	ENST00000511450	ENST00000507423		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	NUDT12	chr5	102895955	-
5UTR-intron	ENST00000511450	ENST00000515407		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	TMEM167A	chr5	82373140	-	NUDT12	chr5	102895955	-
5CDS-intron	ENST00000264689	ENST00000403205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
5CDS-intron	ENST00000264689	ENST00000310898		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
5CDS-intron	ENST00000264689	ENST00000339296		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
5CDS-intron	ENST00000264689	ENST00000431278		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
5CDS-3UTR	ENST00000264689	ENST00000490457		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
intron-intron	ENST00000502282	ENST00000403205		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
intron-intron	ENST00000502282	ENST00000310898		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
intron-intron	ENST00000502282	ENST00000339296		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
intron-intron	ENST00000502282	ENST00000431278		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
intron-3UTR	ENST00000502282	ENST00000490457		TCGA	LD	SKCM	TCGA-EB-A5KH-06A	UFSP2	chr4	186347020	-	ZNF621	chr3	40615874	+
In-frame	ENST00000284548	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
In-frame	ENST00000284548	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000284548	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000284548	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000284548	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
In-frame	ENST00000570156	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
In-frame	ENST00000570156	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000570156	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000570156	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000570156	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366709	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366709	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366709	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366709	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366709	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
In-frame	ENST00000422127	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
In-frame	ENST00000422127	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000422127	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-5UTR	ENST00000422127	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5CDS-intron	ENST00000422127	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366707	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-3CDS	ENST00000366707	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366707	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-5UTR	ENST00000366707	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
5UTR-intron	ENST00000366707	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000359599	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000359599	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000359599	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000359599	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000359599	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000602685	ENST00000602281		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-3CDS	ENST00000602685	ENST00000539444		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000602873		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000366633		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000366636		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000535983		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000537876		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000602685	ENST00000366637		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-5UTR	ENST00000602685	ENST00000439617		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000427560		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
intron-intron	ENST00000602685	ENST00000317586		TCGA	LD	SKCM	TCGA-EB-A5SE-01A	OBSCN	chr1	228433389	+	DISC1	chr1	231829572	+
Frame-shit	ENST00000505113	ENST00000283426		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	AHRR	chr5	376831	+	PLEKHG4B	chr5	181629	+
Frame-shit	ENST00000316418	ENST00000283426		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	AHRR	chr5	376831	+	PLEKHG4B	chr5	181629	+
intron-3CDS	ENST00000512529	ENST00000283426		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	AHRR	chr5	376831	+	PLEKHG4B	chr5	181629	+
intron-3CDS	ENST00000515206	ENST00000283426		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	AHRR	chr5	376831	+	PLEKHG4B	chr5	181629	+
intron-3CDS	ENST00000506456	ENST00000283426		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	AHRR	chr5	376831	+	PLEKHG4B	chr5	181629	+
Frame-shit	ENST00000368301	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368301	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368301	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368301	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000361308	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000361308	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000361308	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000361308	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000347559	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000347559	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000347559	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000347559	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368300	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368300	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368300	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368300	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368299	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368299	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368299	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000368299	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000448611	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000448611	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000448611	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000448611	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368297	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368297	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368297	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000368297	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000473598	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000473598	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000473598	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
In-frame	ENST00000473598	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000392353	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000392353	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000392353	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000392353	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000496738	ENST00000251849		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000496738	ENST00000442415		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000496738	ENST00000534997		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
3UTR-3CDS	ENST00000496738	ENST00000542177		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	LMNA	chr1	156107534	+	RAF1	chr3	12641914	-
Frame-shit	ENST00000313382	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5CDS-intron	ENST00000313382	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
Frame-shit	ENST00000369354	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5CDS-intron	ENST00000369354	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
Frame-shit	ENST00000369356	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5CDS-intron	ENST00000369356	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
Frame-shit	ENST00000530740	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5CDS-intron	ENST00000530740	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
Frame-shit	ENST00000369359	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5CDS-intron	ENST00000369359	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000369351	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000369351	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000369349	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000369349	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000369347	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000369347	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000369348	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000369348	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5UTR-3CDS	ENST00000524974	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
5UTR-intron	ENST00000524974	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000313431	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000313431	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000529945	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000529945	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000479408	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000479408	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000493130	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000493130	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000478649	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000478649	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-3CDS	ENST00000369345	ENST00000274276		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
intron-intron	ENST00000369345	ENST00000502536		TCGA	LD	SKCM	TCGA-EB-A5SF-01A	PDE4DIP	chr1	144866592	+	OSMR	chr5	38932565	+
Frame-shit	ENST00000374023	ENST00000540591		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	C6orf106	chr6	34614378	-	PRAMEF19	chr1	13696098	-
In-frame	ENST00000374023	ENST00000376101		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	C6orf106	chr6	34614378	-	PRAMEF19	chr1	13696098	-
intron-3CDS	ENST00000374026	ENST00000540591		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	C6orf106	chr6	34614378	-	PRAMEF19	chr1	13696098	-
intron-3CDS	ENST00000374026	ENST00000376101		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	C6orf106	chr6	34614378	-	PRAMEF19	chr1	13696098	-
Frame-shit	ENST00000374021	ENST00000540591		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	C6orf106	chr6	34614378	-	PRAMEF19	chr1	13696098	-
Frame-shit	ENST00000374021	ENST00000376101		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	C6orf106	chr6	34614378	-	PRAMEF19	chr1	13696098	-
5UTR-intron	ENST00000228862	ENST00000334456		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000228862	ENST00000376450		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000228862	ENST00000444035		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000228862	ENST00000544570		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000228862	ENST00000418754		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000228862	ENST00000540345		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
5UTR-intron	ENST00000228862	ENST00000540380		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000334456		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000376450		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000444035		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000544570		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000418754		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000540345		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000298573	ENST00000540380		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000334456		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000376450		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000444035		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000544570		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000418754		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000540345		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-intron	ENST00000545864	ENST00000540380		TCGA	LD	SKCM	TCGA-EB-A5SH-06A	DUSP16	chr12	12715051	-	PDE2A	chr11	72342183	-
intron-3CDS	ENST00000290913	ENST00000300119		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000290913	ENST00000442789		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000290913	ENST00000544473		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-intron	ENST00000290913	ENST00000476795		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000508789	ENST00000300119		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000508789	ENST00000442789		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000508789	ENST00000544473		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-intron	ENST00000508789	ENST00000476795		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000515867	ENST00000300119		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000515867	ENST00000442789		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-3CDS	ENST00000515867	ENST00000544473		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
intron-intron	ENST00000515867	ENST00000476795		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	CHCHD6	chr3	126499273	+	MYO1A	chr12	57424958	-
5CDS-5UTR	ENST00000359282	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000359282	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000359282	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000359282	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000603815	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000603815	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000603815	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000603815	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000437231	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000437231	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000437231	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000437231	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000447282	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000447282	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000447282	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000447282	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000549863	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000549863	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000549863	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000549863	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000359462	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000359462	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000359462	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000359462	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000546463	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000546463	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000546463	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000546463	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000552296	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000552296	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000552296	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000552296	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000552819	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000552819	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000552819	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000552819	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000455667	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000455667	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000455667	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000455667	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000439930	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000439930	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000439930	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000439930	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000548933	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000548933	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-5UTR	ENST00000548933	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5CDS-intron	ENST00000548933	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
intron-5UTR	ENST00000541275	ENST00000370584		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
intron-5UTR	ENST00000541275	ENST00000314594		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
intron-5UTR	ENST00000541275	ENST00000298999		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
intron-intron	ENST00000541275	ENST00000370586		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	PCBP2	chr12	53865591	+	R3HCC1L	chr10	99967858	+
5UTR-3CDS	ENST00000370584	ENST00000359282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000603815		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000437231		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000447282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000549863		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000359462		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000546463		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000552296		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000552819		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000455667		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000439930		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-3CDS	ENST00000370584	ENST00000548933		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
5UTR-intron	ENST00000370584	ENST00000541275		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000359282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000603815		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000437231		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000447282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000549863		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000359462		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000546463		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000552296		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000552819		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000455667		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000439930		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000314594	ENST00000548933		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-intron	ENST00000314594	ENST00000541275		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000359282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000603815		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000437231		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000447282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000549863		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000359462		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000546463		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000552296		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000552819		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000455667		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000439930		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000298999	ENST00000548933		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-intron	ENST00000298999	ENST00000541275		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000359282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000603815		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000437231		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000447282		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000549863		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000359462		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000546463		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000552296		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000552819		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000455667		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000439930		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-3CDS	ENST00000370586	ENST00000548933		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
intron-intron	ENST00000370586	ENST00000541275		TCGA	LD	SKCM	TCGA-EB-A5UL-06A	R3HCC1L	chr10	99946320	+	PCBP2	chr12	53873190	+
Frame-shit	ENST00000373408	ENST00000323013		TCGA	LD	SKCM	TCGA-EB-A5UM-01A	CCDC167	chr6	37467598	-	RRP7A	chr22	42914153	-
3UTR-3CDS	ENST00000484427	ENST00000311637		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
3UTR-3CDS	ENST00000484427	ENST00000338821		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
3UTR-3CDS	ENST00000484427	ENST00000402822		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
3UTR-intron	ENST00000484427	ENST00000477492		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
Frame-shit	ENST00000371764	ENST00000311637		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
Frame-shit	ENST00000371764	ENST00000338821		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
Frame-shit	ENST00000371764	ENST00000402822		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
5CDS-intron	ENST00000371764	ENST00000477492		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DDX27	chr20	47836078	+	ATP9A	chr20	50286648	-
5UTR-3CDS	ENST00000466152	ENST00000354981		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
5UTR-3CDS	ENST00000466152	ENST00000378003		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
5UTR-3CDS	ENST00000466152	ENST00000355755		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
5UTR-3CDS	ENST00000466152	ENST00000408042		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371588	ENST00000354981		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371588	ENST00000378003		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371588	ENST00000355755		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371588	ENST00000408042		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371582	ENST00000354981		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371582	ENST00000378003		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371582	ENST00000355755		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371582	ENST00000408042		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371583	ENST00000354981		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371583	ENST00000378003		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371583	ENST00000355755		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
Frame-shit	ENST00000371583	ENST00000408042		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	DPM1	chr20	49571723	-	KIF16B	chr20	16352406	-
5CDS-5UTR	ENST00000395841	ENST00000396029		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395841	ENST00000396032		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395841	ENST00000371602		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395841	ENST00000349014		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000371242	ENST00000396029		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000371242	ENST00000396032		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000371242	ENST00000371602		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000371242	ENST00000349014		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000527947	ENST00000396029		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000527947	ENST00000396032		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000527947	ENST00000371602		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000527947	ENST00000349014		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395840	ENST00000396029		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395840	ENST00000396032		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395840	ENST00000371602		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
5CDS-5UTR	ENST00000395840	ENST00000349014		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RAE1	chr20	55931594	+	ADNP	chr20	49520538	-
Frame-shit	ENST00000389629	ENST00000397299		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RTF1	chr15	41709511	+	JMJD7	chr15	42126938	+
5CDS-intron	ENST00000389629	ENST00000408047		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RTF1	chr15	41709511	+	JMJD7	chr15	42126938	+
5CDS-3UTR	ENST00000389629	ENST00000405106		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RTF1	chr15	41709511	+	JMJD7	chr15	42126938	+
3UTR-3CDS	ENST00000462276	ENST00000397299		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RTF1	chr15	41709511	+	JMJD7	chr15	42126938	+
3UTR-intron	ENST00000462276	ENST00000408047		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RTF1	chr15	41709511	+	JMJD7	chr15	42126938	+
3UTR-3UTR	ENST00000462276	ENST00000405106		TCGA	LD	SKCM	TCGA-EB-A5VU-01A	RTF1	chr15	41709511	+	JMJD7	chr15	42126938	+
Frame-shit	ENST00000368072	ENST00000357847		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000368072	ENST00000344492		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000368072	ENST00000275235		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000368072	ENST00000367598		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000368072	ENST00000494282		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5CDS-intron	ENST00000368072	ENST00000367596		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000440949	ENST00000357847		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000440949	ENST00000344492		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000440949	ENST00000275235		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000440949	ENST00000367598		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
Frame-shit	ENST00000440949	ENST00000494282		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5CDS-intron	ENST00000440949	ENST00000367596		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000532508	ENST00000357847		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000532508	ENST00000344492		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000532508	ENST00000275235		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000532508	ENST00000367598		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-3CDS	ENST00000532508	ENST00000494282		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
5UTR-intron	ENST00000532508	ENST00000367596		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	PEX19	chr1	160252734	-	AIG1	chr6	143486219	+
In-frame	ENST00000263736	ENST00000378711		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45789792	-	C2orf91	chr2	42165753	-
5CDS-intron	ENST00000263736	ENST00000403980		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45789792	-	C2orf91	chr2	42165753	-
5UTR-3CDS	ENST00000535761	ENST00000378711		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45789792	-	C2orf91	chr2	42165753	-
5UTR-intron	ENST00000535761	ENST00000403980		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45789792	-	C2orf91	chr2	42165753	-
intron-3CDS	ENST00000490133	ENST00000378711		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45789792	-	C2orf91	chr2	42165753	-
intron-intron	ENST00000490133	ENST00000403980		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	SRBD1	chr2	45789792	-	C2orf91	chr2	42165753	-
Frame-shit	ENST00000367545	ENST00000313486		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	UTRN	chr6	144795895	+	PITPNA	chr17	1451681	-
Frame-shit	ENST00000367545	ENST00000539476		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	UTRN	chr6	144795895	+	PITPNA	chr17	1451681	-
intron-3CDS	ENST00000367526	ENST00000313486		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	UTRN	chr6	144795895	+	PITPNA	chr17	1451681	-
intron-3CDS	ENST00000367526	ENST00000539476		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	UTRN	chr6	144795895	+	PITPNA	chr17	1451681	-
intron-3CDS	ENST00000480333	ENST00000313486		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	UTRN	chr6	144795895	+	PITPNA	chr17	1451681	-
intron-3CDS	ENST00000480333	ENST00000539476		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	UTRN	chr6	144795895	+	PITPNA	chr17	1451681	-
In-frame	ENST00000264335	ENST00000358430		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	YWHAE	chr17	1303341	-	TXLNB	chr6	139569046	-
5UTR-3CDS	ENST00000571732	ENST00000358430		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	YWHAE	chr17	1303341	-	TXLNB	chr6	139569046	-
In-frame	ENST00000573026	ENST00000358430		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	YWHAE	chr17	1303341	-	TXLNB	chr6	139569046	-
In-frame	ENST00000575977	ENST00000358430		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	YWHAE	chr17	1303341	-	TXLNB	chr6	139569046	-
5UTR-3CDS	ENST00000498643	ENST00000358430		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	YWHAE	chr17	1303341	-	TXLNB	chr6	139569046	-
intron-3CDS	ENST00000587539	ENST00000377950		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-5UTR	ENST00000587539	ENST00000414615		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-5UTR	ENST00000587539	ENST00000594013		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-intron	ENST00000587539	ENST00000599397		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-3CDS	ENST00000324394	ENST00000377950		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-5UTR	ENST00000324394	ENST00000414615		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-5UTR	ENST00000324394	ENST00000594013		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
intron-intron	ENST00000324394	ENST00000599397		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
5UTR-3CDS	ENST00000588094	ENST00000377950		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
5UTR-5UTR	ENST00000588094	ENST00000414615		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
5UTR-5UTR	ENST00000588094	ENST00000594013		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
5UTR-intron	ENST00000588094	ENST00000599397		TCGA	LD	SKCM	TCGA-EB-A6L9-06A	ZNF404	chr19	44405020	-	LYPD5	chr19	44303986	-
Frame-shit	ENST00000532485	ENST00000370706		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000532485	ENST00000357489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000532485	ENST00000491832		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000532485	ENST00000370708		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000532485	ENST00000370702		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000532485	ENST00000370710		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5CDS-intron	ENST00000532485	ENST00000510989		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-3CDS	ENST00000530182	ENST00000370706		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-3CDS	ENST00000530182	ENST00000357489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-3CDS	ENST00000530182	ENST00000491832		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-3CDS	ENST00000530182	ENST00000370708		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-3CDS	ENST00000530182	ENST00000370702		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-3CDS	ENST00000530182	ENST00000370710		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
3UTR-intron	ENST00000530182	ENST00000510989		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000526597	ENST00000370706		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000526597	ENST00000357489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000526597	ENST00000491832		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000526597	ENST00000370708		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000526597	ENST00000370702		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000526597	ENST00000370710		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-intron	ENST00000526597	ENST00000510989		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000533873	ENST00000370706		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000533873	ENST00000357489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000533873	ENST00000491832		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000533873	ENST00000370708		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000533873	ENST00000370702		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
Frame-shit	ENST00000533873	ENST00000370710		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5CDS-intron	ENST00000533873	ENST00000510989		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-3CDS	ENST00000538157	ENST00000370706		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-3CDS	ENST00000538157	ENST00000357489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-3CDS	ENST00000538157	ENST00000491832		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-3CDS	ENST00000538157	ENST00000370708		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-3CDS	ENST00000538157	ENST00000370702		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-3CDS	ENST00000538157	ENST00000370710		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
5UTR-intron	ENST00000538157	ENST00000510989		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000544113	ENST00000370706		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000544113	ENST00000357489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000544113	ENST00000491832		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000544113	ENST00000370708		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000544113	ENST00000370702		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000544113	ENST00000370710		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-intron	ENST00000544113	ENST00000510989		TCGA	LD	SKCM	TCGA-EB-A82B-01A	ACER3	chr11	76572123	+	ZNF451	chr6	56955609	+
intron-3CDS	ENST00000257261	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000257261	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-intron	ENST00000257261	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000522056	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000522056	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-intron	ENST00000522056	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000278840	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000278840	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-intron	ENST00000278840	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000521849	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000521849	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-intron	ENST00000521849	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
5UTR-3CDS	ENST00000574708	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
5UTR-3CDS	ENST00000574708	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
5UTR-intron	ENST00000574708	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000522639	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000522639	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-intron	ENST00000522639	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000517839	ENST00000376217		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-3CDS	ENST00000517839	ENST00000315938		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
intron-intron	ENST00000517839	ENST00000527489		TCGA	LD	SKCM	TCGA-EB-A82B-01A	FADS2	chr11	61560500	+	GDPD4	chr11	76940277	-
5UTR-3CDS	ENST00000340067	ENST00000308488		TCGA	LD	SKCM	TCGA-EB-A82B-01A	KCTD21	chr11	77899619	-	RSF1	chr11	77475734	-
5UTR-3CDS	ENST00000340067	ENST00000360355		TCGA	LD	SKCM	TCGA-EB-A82B-01A	KCTD21	chr11	77899619	-	RSF1	chr11	77475734	-
5UTR-intron	ENST00000340067	ENST00000480887		TCGA	LD	SKCM	TCGA-EB-A82B-01A	KCTD21	chr11	77899619	-	RSF1	chr11	77475734	-
5UTR-intron	ENST00000340067	ENST00000530604		TCGA	LD	SKCM	TCGA-EB-A82B-01A	KCTD21	chr11	77899619	-	RSF1	chr11	77475734	-
5UTR-3CDS	ENST00000356341	ENST00000503581		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-3CDS	ENST00000356341	ENST00000370621		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-3CDS	ENST00000356341	ENST00000370616		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000356341	ENST00000393380		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000356341	ENST00000342421		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000356341	ENST00000370618		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000356341	ENST00000486069		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000530617	ENST00000503581		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000530617	ENST00000370621		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000530617	ENST00000370616		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000530617	ENST00000393380		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000530617	ENST00000342421		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000530617	ENST00000370618		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000530617	ENST00000486069		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-3CDS	ENST00000278568	ENST00000503581		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-3CDS	ENST00000278568	ENST00000370621		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-3CDS	ENST00000278568	ENST00000370616		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000278568	ENST00000393380		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000278568	ENST00000342421		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000278568	ENST00000370618		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000278568	ENST00000486069		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000528203	ENST00000503581		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000528203	ENST00000370621		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000528203	ENST00000370616		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000528203	ENST00000393380		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000528203	ENST00000342421		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000528203	ENST00000370618		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000528203	ENST00000486069		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000525542	ENST00000503581		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000525542	ENST00000370621		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-3CDS	ENST00000525542	ENST00000370616		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000525542	ENST00000393380		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000525542	ENST00000342421		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000525542	ENST00000370618		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
intron-intron	ENST00000525542	ENST00000486069		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	EYS	chr6	64709076	-
5UTR-intron	ENST00000356341	ENST00000307980		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
5UTR-intron	ENST00000356341	ENST00000535644		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
intron-intron	ENST00000530617	ENST00000307980		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
intron-intron	ENST00000530617	ENST00000535644		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
5UTR-intron	ENST00000278568	ENST00000307980		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
5UTR-intron	ENST00000278568	ENST00000535644		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
intron-intron	ENST00000528203	ENST00000307980		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
intron-intron	ENST00000528203	ENST00000535644		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
intron-intron	ENST00000525542	ENST00000307980		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
intron-intron	ENST00000525542	ENST00000535644		TCGA	LD	SKCM	TCGA-EB-A82B-01A	PAK1	chr11	77184597	-	RAD9A	chr11	67155006	+
In-frame	ENST00000528057	ENST00000328404		TCGA	LD	SKCM	TCGA-EB-A82B-01A	RPS6KA4	chr11	64126921	+	TEX40	chr11	64070954	+
In-frame	ENST00000528057	ENST00000539943		TCGA	LD	SKCM	TCGA-EB-A82B-01A	RPS6KA4	chr11	64126921	+	TEX40	chr11	64070954	+
In-frame	ENST00000334205	ENST00000328404		TCGA	LD	SKCM	TCGA-EB-A82B-01A	RPS6KA4	chr11	64126921	+	TEX40	chr11	64070954	+
In-frame	ENST00000334205	ENST00000539943		TCGA	LD	SKCM	TCGA-EB-A82B-01A	RPS6KA4	chr11	64126921	+	TEX40	chr11	64070954	+
In-frame	ENST00000294261	ENST00000328404		TCGA	LD	SKCM	TCGA-EB-A82B-01A	RPS6KA4	chr11	64126921	+	TEX40	chr11	64070954	+
In-frame	ENST00000294261	ENST00000539943		TCGA	LD	SKCM	TCGA-EB-A82B-01A	RPS6KA4	chr11	64126921	+	TEX40	chr11	64070954	+
5UTR-5UTR	ENST00000379339	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
5UTR-5UTR	ENST00000448924	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
5UTR-5UTR	ENST00000294576	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
5UTR-5UTR	ENST00000421241	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
5UTR-5UTR	ENST00000482816	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
5UTR-5UTR	ENST00000437760	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
intron-5UTR	ENST00000379320	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
intron-5UTR	ENST00000379319	ENST00000378785		TCGA	LD	SKCM	TCGA-EB-A82C-01A	C1orf159	chr1	1051440	-	ATAD3C	chr1	1386061	+
Frame-shit	ENST00000371191	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371191	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371191	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371191	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371191	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000407417	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000407417	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000407417	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000407417	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000407417	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
3UTR-3CDS	ENST00000479364	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
3UTR-3CDS	ENST00000479364	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
3UTR-3CDS	ENST00000479364	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
3UTR-intron	ENST00000479364	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
3UTR-intron	ENST00000479364	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371189	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371189	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371189	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371189	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371189	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000403491	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000403491	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000403491	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000403491	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000403491	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371187	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371187	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371187	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371187	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371187	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-3CDS	ENST00000485903	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-3CDS	ENST00000485903	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-3CDS	ENST00000485903	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-intron	ENST00000485903	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-intron	ENST00000485903	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371185	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371185	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371185	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371185	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371185	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371184	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371184	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
Frame-shit	ENST00000371184	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371184	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5CDS-intron	ENST00000371184	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-3CDS	ENST00000357977	ENST00000371839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-3CDS	ENST00000357977	ENST00000371838		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-3CDS	ENST00000357977	ENST00000371836		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-intron	ENST00000357977	ENST00000334103		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
intron-intron	ENST00000357977	ENST00000497451		TCGA	LD	SKCM	TCGA-EB-A82C-01A	NFIA	chr1	61849037	+	AGBL4	chr1	49332902	-
5UTR-intron	ENST00000361189	ENST00000515518		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
5UTR-intron	ENST00000361189	ENST00000429839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
5UTR-intron	ENST00000361189	ENST00000455884		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-intron	ENST00000361557	ENST00000515518		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-intron	ENST00000361557	ENST00000429839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-intron	ENST00000361557	ENST00000455884		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-intron	ENST00000511624	ENST00000515518		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-intron	ENST00000511624	ENST00000429839		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-intron	ENST00000511624	ENST00000455884		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PJA2	chr5	108745543	-	TMEM232	chr5	109668626	-
intron-3CDS	ENST00000458258	ENST00000401783		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
intron-3CDS	ENST00000458258	ENST00000374469		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
intron-intron	ENST00000458258	ENST00000467821		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
intron-intron	ENST00000458258	ENST00000302728		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
intron-intron	ENST00000458258	ENST00000374461		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
intron-intron	ENST00000458258	ENST00000297826		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
Frame-shit	ENST00000334318	ENST00000401783		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
Frame-shit	ENST00000334318	ENST00000374469		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000334318	ENST00000467821		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000334318	ENST00000302728		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000334318	ENST00000374461		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000334318	ENST00000297826		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000374257	ENST00000401783		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000374257	ENST00000374469		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000374257	ENST00000467821		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000374257	ENST00000302728		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000374257	ENST00000374461		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000374257	ENST00000297826		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
Frame-shit	ENST00000374255	ENST00000401783		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
Frame-shit	ENST00000374255	ENST00000374469		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000374255	ENST00000467821		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000374255	ENST00000302728		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000374255	ENST00000374461		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5CDS-intron	ENST00000374255	ENST00000297826		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000343327	ENST00000401783		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000343327	ENST00000374469		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000343327	ENST00000467821		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000343327	ENST00000302728		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000343327	ENST00000374461		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000343327	ENST00000297826		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000487997	ENST00000401783		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000487997	ENST00000374469		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000487997	ENST00000467821		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000487997	ENST00000302728		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000487997	ENST00000374461		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-intron	ENST00000487997	ENST00000297826		TCGA	LD	SKCM	TCGA-EB-A82C-01A	PTBP3	chr9	115095750	-	SVEP1	chr9	113141797	-
5UTR-3CDS	ENST00000444870	ENST00000373347		TCGA	LD	SKCM	TCGA-EB-A82C-01A	SMIM1	chr1	3689745	+	DLGAP3	chr1	35365874	-
5UTR-intron	ENST00000444870	ENST00000495979		TCGA	LD	SKCM	TCGA-EB-A82C-01A	SMIM1	chr1	3689745	+	DLGAP3	chr1	35365874	-
5UTR-intron	ENST00000444870	ENST00000235180		TCGA	LD	SKCM	TCGA-EB-A82C-01A	SMIM1	chr1	3689745	+	DLGAP3	chr1	35365874	-
5UTR-3CDS	ENST00000561886	ENST00000373347		TCGA	LD	SKCM	TCGA-EB-A82C-01A	SMIM1	chr1	3689745	+	DLGAP3	chr1	35365874	-
5UTR-intron	ENST00000561886	ENST00000495979		TCGA	LD	SKCM	TCGA-EB-A82C-01A	SMIM1	chr1	3689745	+	DLGAP3	chr1	35365874	-
5UTR-intron	ENST00000561886	ENST00000235180		TCGA	LD	SKCM	TCGA-EB-A82C-01A	SMIM1	chr1	3689745	+	DLGAP3	chr1	35365874	-
5CDS-intron	ENST00000220763	ENST00000450873		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
5CDS-intron	ENST00000220763	ENST00000284957		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
5CDS-intron	ENST00000220763	ENST00000439720		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
5CDS-intron	ENST00000220763	ENST00000437078		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
5CDS-intron	ENST00000220763	ENST00000484547		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
intron-intron	ENST00000529551	ENST00000450873		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
intron-intron	ENST00000529551	ENST00000284957		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
intron-intron	ENST00000529551	ENST00000439720		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
intron-intron	ENST00000529551	ENST00000437078		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
intron-intron	ENST00000529551	ENST00000484547		TCGA	LD	SKCM	TCGA-EB-A85I-01A	CPQ	chr8	98041722	+	RABGEF1	chr7	66177154	+
Frame-shit	ENST00000357503	ENST00000409858		TCGA	LD	SKCM	TCGA-EB-A85J-01A	TOR4A	chr9	140174282	+	UAP1L1	chr9	139974454	+
5CDS-intron	ENST00000357503	ENST00000476184		TCGA	LD	SKCM	TCGA-EB-A85J-01A	TOR4A	chr9	140174282	+	UAP1L1	chr9	139974454	+
5CDS-intron	ENST00000357503	ENST00000360271		TCGA	LD	SKCM	TCGA-EB-A85J-01A	TOR4A	chr9	140174282	+	UAP1L1	chr9	139974454	+
Frame-shit	ENST00000324856	ENST00000331886		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000324856	ENST00000394147		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000324856	ENST00000551156		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
5CDS-3UTR	ENST00000324856	ENST00000549079		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000457599	ENST00000331886		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000457599	ENST00000394147		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000457599	ENST00000551156		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
5CDS-3UTR	ENST00000457599	ENST00000549079		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
In-frame	ENST00000374152	ENST00000331886		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
In-frame	ENST00000374152	ENST00000394147		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
In-frame	ENST00000374152	ENST00000551156		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
5CDS-3UTR	ENST00000374152	ENST00000549079		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000540690	ENST00000331886		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000540690	ENST00000394147		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
Frame-shit	ENST00000540690	ENST00000551156		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
5CDS-3UTR	ENST00000540690	ENST00000549079		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ARID1A	chr1	27106722	+	DGKA	chr12	56346689	+
5CDS-5UTR	ENST00000264607	ENST00000392011		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
5CDS-5UTR	ENST00000264607	ENST00000409212		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
5CDS-intron	ENST00000264607	ENST00000344528		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
5CDS-intron	ENST00000264607	ENST00000489601		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-5UTR	ENST00000469885	ENST00000392011		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-5UTR	ENST00000469885	ENST00000409212		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-intron	ENST00000469885	ENST00000344528		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-intron	ENST00000469885	ENST00000489601		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-5UTR	ENST00000409297	ENST00000392011		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-5UTR	ENST00000409297	ENST00000409212		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-intron	ENST00000409297	ENST00000344528		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
intron-intron	ENST00000409297	ENST00000489601		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ASB1	chr2	239344650	+	SH3BP4	chr2	235943511	+
Frame-shit	ENST00000336926	ENST00000396591		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
5CDS-intron	ENST00000336926	ENST00000380860		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
5CDS-intron	ENST00000336926	ENST00000502979		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
Frame-shit	ENST00000434438	ENST00000396591		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
5CDS-intron	ENST00000434438	ENST00000380860		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
5CDS-intron	ENST00000434438	ENST00000502979		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
intron-3CDS	ENST00000479835	ENST00000396591		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
intron-intron	ENST00000479835	ENST00000380860		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
intron-intron	ENST00000479835	ENST00000502979		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	HIP1	chr7	75210553	-	SLC30A5	chr5	68425274	+
5UTR-3CDS	ENST00000383768	ENST00000396556		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ZCWPW2	chr3	28390694	+	OSBPL10	chr3	31921322	-
5UTR-3CDS	ENST00000383768	ENST00000438237		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ZCWPW2	chr3	28390694	+	OSBPL10	chr3	31921322	-
5UTR-intron	ENST00000383768	ENST00000467647		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ZCWPW2	chr3	28390694	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000421010	ENST00000396556		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ZCWPW2	chr3	28390694	+	OSBPL10	chr3	31921322	-
intron-3CDS	ENST00000421010	ENST00000438237		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ZCWPW2	chr3	28390694	+	OSBPL10	chr3	31921322	-
intron-intron	ENST00000421010	ENST00000467647		TCGA	LD	SKCM	TCGA-EE-A17Z-06A	ZCWPW2	chr3	28390694	+	OSBPL10	chr3	31921322	-
5UTR-3CDS	ENST00000229955	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000229955	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000229955	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000229955	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-3CDS	ENST00000417980	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000417980	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000417980	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000417980	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	GPR63	chr6	97285144	-	NPC1L1	chr7	44561841	-
In-frame	ENST00000481848	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000481848	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000481848	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000481848	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
In-frame	ENST00000556132	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000556132	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000556132	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000556132	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
In-frame	ENST00000368268	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000368268	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000368268	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000368268	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5UTR-3CDS	ENST00000474293	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000474293	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000474293	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5UTR-intron	ENST00000474293	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
Frame-shit	ENST00000525778	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000525778	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000525778	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
5CDS-intron	ENST00000525778	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
intron-3CDS	ENST00000465909	ENST00000289547		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
intron-intron	ENST00000465909	ENST00000546276		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
intron-intron	ENST00000465909	ENST00000381160		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
intron-intron	ENST00000465909	ENST00000423141		TCGA	LD	SKCM	TCGA-EE-A181-06A	SOGA3	chr6	127796438	-	NPC1L1	chr7	44561841	-
Frame-shit	ENST00000322313	ENST00000389484		TCGA	LD	SKCM	TCGA-EE-A181-06A	WDR33	chr2	128520636	-	LRP1B	chr2	142567970	-
Frame-shit	ENST00000322313	ENST00000486364		TCGA	LD	SKCM	TCGA-EE-A181-06A	WDR33	chr2	128520636	-	LRP1B	chr2	142567970	-
Frame-shit	ENST00000393006	ENST00000389484		TCGA	LD	SKCM	TCGA-EE-A181-06A	WDR33	chr2	128520636	-	LRP1B	chr2	142567970	-
Frame-shit	ENST00000393006	ENST00000486364		TCGA	LD	SKCM	TCGA-EE-A181-06A	WDR33	chr2	128520636	-	LRP1B	chr2	142567970	-
intron-3CDS	ENST00000409658	ENST00000389484		TCGA	LD	SKCM	TCGA-EE-A181-06A	WDR33	chr2	128520636	-	LRP1B	chr2	142567970	-
intron-3CDS	ENST00000409658	ENST00000486364		TCGA	LD	SKCM	TCGA-EE-A181-06A	WDR33	chr2	128520636	-	LRP1B	chr2	142567970	-
In-frame	ENST00000433674	ENST00000367929		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
5CDS-intron	ENST00000433674	ENST00000359567		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
5CDS-intron	ENST00000433674	ENST00000493550		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
In-frame	ENST00000295006	ENST00000367929		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
5CDS-intron	ENST00000295006	ENST00000359567		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
5CDS-intron	ENST00000295006	ENST00000493550		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
3UTR-3CDS	ENST00000474026	ENST00000367929		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
3UTR-intron	ENST00000474026	ENST00000359567		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
3UTR-intron	ENST00000474026	ENST00000493550		TCGA	LD	SKCM	TCGA-EE-A182-06A	CAPN2	chr1	223954118	+	SH2D1B	chr1	162368877	-
Frame-shit	ENST00000368814	ENST00000368194		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5CDS-5UTR	ENST00000368814	ENST00000487682		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5CDS-5UTR	ENST00000368814	ENST00000361409		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5CDS-5UTR	ENST00000368814	ENST00000315174		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5UTR-3CDS	ENST00000477437	ENST00000368194		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5UTR-5UTR	ENST00000477437	ENST00000487682		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5UTR-5UTR	ENST00000477437	ENST00000361409		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
5UTR-5UTR	ENST00000477437	ENST00000315174		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
intron-3CDS	ENST00000489410	ENST00000368194		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
intron-5UTR	ENST00000489410	ENST00000487682		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
intron-5UTR	ENST00000489410	ENST00000361409		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
intron-5UTR	ENST00000489410	ENST00000315174		TCGA	LD	SKCM	TCGA-EE-A182-06A	THEM4	chr1	151860749	-	ARHGEF11	chr1	156910217	-
In-frame	ENST00000412331	ENST00000399839		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000412331	ENST00000449907		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000412331	ENST00000399837		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000412331	ENST00000330232		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000412331	ENST00000262607		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
5CDS-5UTR	ENST00000412331	ENST00000480276		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000381683	ENST00000399839		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000381683	ENST00000449907		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000381683	ENST00000399837		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000381683	ENST00000330232		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000381683	ENST00000262607		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
5CDS-5UTR	ENST00000381683	ENST00000480276		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000406934	ENST00000399839		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000406934	ENST00000449907		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000406934	ENST00000399837		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000406934	ENST00000330232		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000406934	ENST00000262607		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
5CDS-5UTR	ENST00000406934	ENST00000480276		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
intron-3CDS	ENST00000476955	ENST00000399839		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
intron-3CDS	ENST00000476955	ENST00000449907		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
intron-3CDS	ENST00000476955	ENST00000399837		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
intron-3CDS	ENST00000476955	ENST00000330232		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
intron-3CDS	ENST00000476955	ENST00000262607		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
intron-5UTR	ENST00000476955	ENST00000480276		TCGA	LD	SKCM	TCGA-EE-A184-06A	EIF3L	chr22	38274178	+	CECR1	chr22	17672700	-
In-frame	ENST00000379310	ENST00000357387		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
In-frame	ENST00000379310	ENST00000296782		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
5CDS-intron	ENST00000379310	ENST00000503698		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
In-frame	ENST00000281496	ENST00000357387		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
In-frame	ENST00000281496	ENST00000296782		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
5CDS-intron	ENST00000281496	ENST00000503698		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
intron-3CDS	ENST00000478987	ENST00000357387		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
intron-3CDS	ENST00000478987	ENST00000296782		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
intron-intron	ENST00000478987	ENST00000503698		TCGA	LD	SKCM	TCGA-EE-A184-06A	VWA8	chr13	42534989	-	RICTOR	chr5	38964994	-
Frame-shit	ENST00000265069	ENST00000216146		TCGA	LD	SKCM	TCGA-EE-A184-06A	ZFR	chr5	32444335	-	RPL3	chr22	39714597	-
5CDS-5UTR	ENST00000265069	ENST00000465618		TCGA	LD	SKCM	TCGA-EE-A184-06A	ZFR	chr5	32444335	-	RPL3	chr22	39714597	-
5CDS-5UTR	ENST00000265069	ENST00000401609		TCGA	LD	SKCM	TCGA-EE-A184-06A	ZFR	chr5	32444335	-	RPL3	chr22	39714597	-
intron-3CDS	ENST00000510369	ENST00000216146		TCGA	LD	SKCM	TCGA-EE-A184-06A	ZFR	chr5	32444335	-	RPL3	chr22	39714597	-
intron-5UTR	ENST00000510369	ENST00000465618		TCGA	LD	SKCM	TCGA-EE-A184-06A	ZFR	chr5	32444335	-	RPL3	chr22	39714597	-
intron-5UTR	ENST00000510369	ENST00000401609		TCGA	LD	SKCM	TCGA-EE-A184-06A	ZFR	chr5	32444335	-	RPL3	chr22	39714597	-
5UTR-3CDS	ENST00000263650	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000263650	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000263650	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-3CDS	ENST00000389989	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000389989	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000389989	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
intron-3CDS	ENST00000525498	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
intron-5UTR	ENST00000525498	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
intron-5UTR	ENST00000525498	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-3CDS	ENST00000542243	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000542243	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000542243	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-3CDS	ENST00000348039	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000348039	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000348039	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
intron-3CDS	ENST00000478260	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
intron-5UTR	ENST00000478260	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
intron-5UTR	ENST00000478260	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-3CDS	ENST00000528124	ENST00000533594		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000528124	ENST00000526203		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
5UTR-5UTR	ENST00000528124	ENST00000455942		TCGA	LD	SKCM	TCGA-EE-A20C-06A	OSBPL5	chr11	3186446	-	SLC22A18AS	chr11	2909865	-
Frame-shit	ENST00000262370	ENST00000444310		TCGA	LD	SKCM	TCGA-EE-A20F-06A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000415496	ENST00000444310		TCGA	LD	SKCM	TCGA-EE-A20F-06A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000399577	ENST00000444310		TCGA	LD	SKCM	TCGA-EE-A20F-06A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000588994	ENST00000444310		TCGA	LD	SKCM	TCGA-EE-A20F-06A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
Frame-shit	ENST00000586183	ENST00000444310		TCGA	LD	SKCM	TCGA-EE-A20F-06A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
intron-3CDS	ENST00000588015	ENST00000444310		TCGA	LD	SKCM	TCGA-EE-A20F-06A	MGRN1	chr16	4675049	+	C16orf96	chr16	4621562	+
5CDS-5UTR	ENST00000258381	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
5CDS-5UTR	ENST00000358662	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
5CDS-5UTR	ENST00000392048	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
5CDS-5UTR	ENST00000258382	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
5CDS-5UTR	ENST00000540870	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
5CDS-5UTR	ENST00000338556	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
5UTR-5UTR	ENST00000486146	ENST00000606973		TCGA	LD	SKCM	TCGA-EE-A20I-06A	SP110	chr2	231072706	-	TPTE2P2	chr13	52801231	-
Frame-shit	ENST00000373996	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000373996	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000373996	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000373996	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000373996	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000373996	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000313400	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000313400	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000313400	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000313400	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000313400	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000313400	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361209	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361209	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361209	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361209	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000361209	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000361209	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361477	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361477	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361477	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000361477	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000361477	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000361477	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000288520	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000288520	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000288520	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
Frame-shit	ENST00000288520	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000288520	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000288520	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000341734	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000341734	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000341734	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000341734	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000341734	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000341734	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000358637	ENST00000510514		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000358637	ENST00000555236		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000358637	ENST00000434623		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
In-frame	ENST00000358637	ENST00000374525		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000358637	ENST00000259318		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-intron	ENST00000358637	ENST00000482335		TCGA	LD	SKCM	TCGA-EE-A29A-06A	ASTN2	chr9	119380603	-	AKAP2	chr9	112898407	+
5CDS-5UTR	ENST00000287647	ENST00000498623		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000287647	ENST00000287613		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000287647	ENST00000397261		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000287647	ENST00000433034		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383807	ENST00000498623		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383807	ENST00000287613		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383807	ENST00000397261		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383807	ENST00000433034		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383806	ENST00000498623		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383806	ENST00000287613		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383806	ENST00000397261		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000383806	ENST00000433034		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000419585	ENST00000498623		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000419585	ENST00000287613		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000419585	ENST00000397261		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000419585	ENST00000433034		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000431693	ENST00000498623		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000431693	ENST00000287613		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000431693	ENST00000397261		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
5CDS-5UTR	ENST00000431693	ENST00000433034		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
intron-5UTR	ENST00000438741	ENST00000498623		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
intron-5UTR	ENST00000438741	ENST00000287613		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
intron-5UTR	ENST00000438741	ENST00000397261		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
intron-5UTR	ENST00000438741	ENST00000433034		TCGA	LD	SKCM	TCGA-EE-A29D-06A	FANCD2	chr3	10070405	+	ARPC4	chr3	9841869	+
Frame-shit	ENST00000402574	ENST00000366691		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
5CDS-intron	ENST00000402574	ENST00000493528		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
Frame-shit	ENST00000366918	ENST00000366691		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
5CDS-intron	ENST00000366918	ENST00000493528		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
Frame-shit	ENST00000366917	ENST00000366691		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
5CDS-intron	ENST00000366917	ENST00000493528		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
intron-3CDS	ENST00000485104	ENST00000366691		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
intron-intron	ENST00000485104	ENST00000493528		TCGA	LD	SKCM	TCGA-EE-A29D-06A	MARK1	chr1	220826694	+	RHOU	chr1	228873420	+
3UTR-3CDS	ENST00000578868	ENST00000250113		TCGA	LD	SKCM	TCGA-EE-A29D-06A	SENP3	chr17	7470322	+	FXR2	chr17	7499312	-
3UTR-intron	ENST00000578868	ENST00000573057		TCGA	LD	SKCM	TCGA-EE-A29D-06A	SENP3	chr17	7470322	+	FXR2	chr17	7499312	-
In-frame	ENST00000321337	ENST00000250113		TCGA	LD	SKCM	TCGA-EE-A29D-06A	SENP3	chr17	7470322	+	FXR2	chr17	7499312	-
5CDS-intron	ENST00000321337	ENST00000573057		TCGA	LD	SKCM	TCGA-EE-A29D-06A	SENP3	chr17	7470322	+	FXR2	chr17	7499312	-
In-frame	ENST00000429205	ENST00000250113		TCGA	LD	SKCM	TCGA-EE-A29D-06A	SENP3	chr17	7470322	+	FXR2	chr17	7499312	-
5CDS-intron	ENST00000429205	ENST00000573057		TCGA	LD	SKCM	TCGA-EE-A29D-06A	SENP3	chr17	7470322	+	FXR2	chr17	7499312	-
Frame-shit	ENST00000299413	ENST00000263398		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000526025		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000449691		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000360158		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000415148		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000437706		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000433354		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000428726		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000526669		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000433892		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000278386		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000434472		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
Frame-shit	ENST00000299413	ENST00000352818		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
5CDS-intron	ENST00000299413	ENST00000528922		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000263398		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000526025		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000449691		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000360158		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000415148		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000437706		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000433354		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000428726		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000526669		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000433892		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000278386		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000434472		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-3CDS	ENST00000532066	ENST00000352818		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
3UTR-intron	ENST00000532066	ENST00000528922		TCGA	LD	SKCM	TCGA-EE-A29D-06A	TRIM44	chr11	35756993	+	CD44	chr11	35198122	+
5UTR-5UTR	ENST00000442713	ENST00000579408		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000442713	ENST00000579248		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000442713	ENST00000581373		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000442713	ENST00000580261		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000442713	ENST00000418495		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-intron	ENST00000442713	ENST00000580210		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-intron	ENST00000442713	ENST00000581091		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000269445	ENST00000579408		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000269445	ENST00000579248		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000269445	ENST00000581373		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000269445	ENST00000580261		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000269445	ENST00000418495		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-intron	ENST00000269445	ENST00000580210		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-intron	ENST00000269445	ENST00000581091		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000584977	ENST00000579408		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000584977	ENST00000579248		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000584977	ENST00000581373		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000584977	ENST00000580261		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-5UTR	ENST00000584977	ENST00000418495		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-intron	ENST00000584977	ENST00000580210		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
5UTR-intron	ENST00000584977	ENST00000581091		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-5UTR	ENST00000578396	ENST00000579408		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-5UTR	ENST00000578396	ENST00000579248		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-5UTR	ENST00000578396	ENST00000581373		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-5UTR	ENST00000578396	ENST00000580261		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-5UTR	ENST00000578396	ENST00000418495		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-intron	ENST00000578396	ENST00000580210		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
intron-intron	ENST00000578396	ENST00000581091		TCGA	LD	SKCM	TCGA-EE-A29E-06A	DYM	chr18	46986768	-	RPL17	chr18	47017954	-
In-frame	ENST00000318063	ENST00000212355		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
In-frame	ENST00000318063	ENST00000370399		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
In-frame	ENST00000318063	ENST00000525962		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
5CDS-5UTR	ENST00000318063	ENST00000468996		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
intron-3CDS	ENST00000519866	ENST00000212355		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
intron-3CDS	ENST00000519866	ENST00000370399		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
intron-3CDS	ENST00000519866	ENST00000525962		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
intron-5UTR	ENST00000519866	ENST00000468996		TCGA	LD	SKCM	TCGA-EE-A29L-06A	MICU3	chr8	16885169	+	TGFBR3	chr1	92200516	-
Frame-shit	ENST00000306773	ENST00000266087		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
In-frame	ENST00000306773	ENST00000382058		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5CDS-5UTR	ENST00000306773	ENST00000397426		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5CDS-3UTR	ENST00000306773	ENST00000465418		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5UTR-3CDS	ENST00000575212	ENST00000266087		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5UTR-3CDS	ENST00000575212	ENST00000382058		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5UTR-5UTR	ENST00000575212	ENST00000397426		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5UTR-3UTR	ENST00000575212	ENST00000465418		TCGA	LD	SKCM	TCGA-EE-A29L-06A	NPTX1	chr17	78449311	-	FBXO7	chr22	32875120	+
5CDS-5UTR	ENST00000262187	ENST00000416947		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000262187	ENST00000493503		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000262187	ENST00000270139		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000262187	ENST00000442357		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-5UTR	ENST00000472642	ENST00000416947		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000472642	ENST00000493503		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000472642	ENST00000270139		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000472642	ENST00000442357		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-5UTR	ENST00000496004	ENST00000416947		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000496004	ENST00000493503		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000496004	ENST00000270139		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-3UTR	ENST00000496004	ENST00000442357		TCGA	LD	SKCM	TCGA-EE-A29L-06A	RHEB	chr7	151167657	-	IFNAR1	chr21	34707830	+
5CDS-5UTR	ENST00000351097	ENST00000400286		TCGA	LD	SKCM	TCGA-EE-A29L-06A	USP25	chr21	17163983	+	SLITRK6	chr13	86373121	-
5CDS-5UTR	ENST00000285679	ENST00000400286		TCGA	LD	SKCM	TCGA-EE-A29L-06A	USP25	chr21	17163983	+	SLITRK6	chr13	86373121	-
5CDS-5UTR	ENST00000285681	ENST00000400286		TCGA	LD	SKCM	TCGA-EE-A29L-06A	USP25	chr21	17163983	+	SLITRK6	chr13	86373121	-
5CDS-5UTR	ENST00000400183	ENST00000400286		TCGA	LD	SKCM	TCGA-EE-A29L-06A	USP25	chr21	17163983	+	SLITRK6	chr13	86373121	-
3UTR-5UTR	ENST00000547201	ENST00000400286		TCGA	LD	SKCM	TCGA-EE-A29L-06A	USP25	chr21	17163983	+	SLITRK6	chr13	86373121	-
Frame-shit	ENST00000216225	ENST00000242804		TCGA	LD	SKCM	TCGA-EE-A29M-06A	RBX1	chr22	41363888	+	ZNF442	chr19	12463928	-
5CDS-intron	ENST00000216225	ENST00000438182		TCGA	LD	SKCM	TCGA-EE-A29M-06A	RBX1	chr22	41363888	+	ZNF442	chr19	12463928	-
5CDS-5UTR	ENST00000399231	ENST00000261844		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000399231	ENST00000562351		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-intron	ENST00000399231	ENST00000546305		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000356338	ENST00000261844		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000356338	ENST00000562351		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-intron	ENST00000356338	ENST00000546305		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000358212	ENST00000261844		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000358212	ENST00000562351		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-intron	ENST00000358212	ENST00000546305		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000399233	ENST00000261844		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000399233	ENST00000562351		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-intron	ENST00000399233	ENST00000546305		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000553916	ENST00000261844		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-5UTR	ENST00000553916	ENST00000562351		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
5CDS-intron	ENST00000553916	ENST00000546305		TCGA	LD	SKCM	TCGA-EE-A29P-06A	MYO5A	chr15	52667501	-	FAM214A	chr15	52970319	-
Frame-shit	ENST00000242783	ENST00000392514		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
Frame-shit	ENST00000242783	ENST00000551150		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000242783	ENST00000552292		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000242783	ENST00000313104		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000242783	ENST00000546989		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000242783	ENST00000228306		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000242783	ENST00000550296		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-3CDS	ENST00000587429	ENST00000392514		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-3CDS	ENST00000587429	ENST00000551150		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-intron	ENST00000587429	ENST00000552292		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-intron	ENST00000587429	ENST00000313104		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-intron	ENST00000587429	ENST00000546989		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-intron	ENST00000587429	ENST00000228306		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
intron-intron	ENST00000587429	ENST00000550296		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
Frame-shit	ENST00000342216	ENST00000392514		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
Frame-shit	ENST00000342216	ENST00000551150		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000342216	ENST00000552292		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000342216	ENST00000313104		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000342216	ENST00000546989		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000342216	ENST00000228306		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
5CDS-intron	ENST00000342216	ENST00000550296		TCGA	LD	SKCM	TCGA-EE-A29Q-06A	PKN1	chr19	14578779	+	RPLP0	chr12	120636542	-
Frame-shit	ENST00000380750	ENST00000341048		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000380750	ENST00000504958		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000380750	ENST00000505970		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000380750	ENST00000513241		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000380750	ENST00000434982		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
Frame-shit	ENST00000506542	ENST00000341048		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000506542	ENST00000504958		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000506542	ENST00000505970		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000506542	ENST00000513241		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000506542	ENST00000434982		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
Frame-shit	ENST00000515588	ENST00000341048		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000515588	ENST00000504958		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000515588	ENST00000505970		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000515588	ENST00000513241		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000515588	ENST00000434982		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
Frame-shit	ENST00000380751	ENST00000341048		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000380751	ENST00000504958		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000380751	ENST00000505970		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000380751	ENST00000513241		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000380751	ENST00000434982		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
Frame-shit	ENST00000503931	ENST00000341048		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000503931	ENST00000504958		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000503931	ENST00000505970		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-5UTR	ENST00000503931	ENST00000513241		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5CDS-intron	ENST00000503931	ENST00000434982		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
3UTR-3CDS	ENST00000514285	ENST00000341048		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
3UTR-intron	ENST00000514285	ENST00000504958		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
3UTR-5UTR	ENST00000514285	ENST00000505970		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
3UTR-5UTR	ENST00000514285	ENST00000513241		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
3UTR-intron	ENST00000514285	ENST00000434982		TCGA	LD	SKCM	TCGA-EE-A29S-06A	SERF1B	chr5	69322342	+	ANKRD55	chr5	55439756	-
5UTR-3CDS	ENST00000421307	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000421307	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000421307	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000354379	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000354379	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000354379	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000336686	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000336686	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000336686	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000421276	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000421276	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000421276	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000396428	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000396428	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000396428	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000440230	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000440230	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000440230	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000490597	ENST00000523492		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3CDS	ENST00000490597	ENST00000286234		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5UTR-3UTR	ENST00000490597	ENST00000518057		TCGA	LD	SKCM	TCGA-EE-A29V-06A	LRRFIP2	chr3	37216030	-	DEPTOR	chr8	121061815	+
5CDS-5UTR	ENST00000355151	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000355151	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000355151	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000355151	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000355151	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000355151	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000355151	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397496	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555345	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000432849	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000553711	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000397505	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5CDS-5UTR	ENST00000557221	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000311892	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000556840	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
3UTR-5UTR	ENST00000461594	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000299088		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000341470		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000397379		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000397382		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000397377		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000406429		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-5UTR	ENST00000555536	ENST00000557513		TCGA	LD	SKCM	TCGA-EE-A29V-06A	MRPL52	chr14	23299463	+	C14orf93	chr14	23468365	-
5UTR-3CDS	ENST00000537330	ENST00000447716		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000395243		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000453384		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000301043		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000450529		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000415040		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000395242		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000395245		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000537330	ENST00000436730		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000447716		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000395243		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000453384		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000301043		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000450529		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000415040		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000395242		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000395245		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000570891	ENST00000436730		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000447716		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000395243		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000453384		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000301043		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000450529		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000415040		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000395242		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000395245		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000306801	ENST00000436730		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000447716		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000395243		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000453384		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000301043		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000450529		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000415040		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000395242		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000395245		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
Frame-shit	ENST00000544334	ENST00000436730		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000447716		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000395243		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000453384		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000301043		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000450529		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000415040		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000395242		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000395245		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
intron-3CDS	ENST00000575542	ENST00000436730		TCGA	LD	SKCM	TCGA-EE-A29V-06A	RPTOR	chr17	78519591	+	RAB34	chr17	27042919	-
5UTR-3CDS	ENST00000317552	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000317552	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000317552	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000453318	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000453318	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-5UTR	ENST00000453318	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000380779	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000380779	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-5UTR	ENST00000380779	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000380780	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000380780	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-5UTR	ENST00000380780	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000380785	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000380785	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000380785	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000380787	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000380787	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-5UTR	ENST00000380787	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000380782	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-3CDS	ENST00000380782	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
5UTR-5UTR	ENST00000380782	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000479925	ENST00000374023		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-3CDS	ENST00000479925	ENST00000374026		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
intron-5UTR	ENST00000479925	ENST00000374021		TCGA	LD	SKCM	TCGA-EE-A29X-06A	MID1	chrX	10588330	-	C6orf106	chr6	34622556	-
In-frame	ENST00000393409	ENST00000381916		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000333602		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000428187		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000392400		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000316664		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000393409	ENST00000468819		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
In-frame	ENST00000251772	ENST00000381916		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000333602		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000428187		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000392400		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000316664		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
5CDS-5UTR	ENST00000251772	ENST00000468819		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-3CDS	ENST00000505278	ENST00000381916		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000333602		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000428187		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000392400		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000316664		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
intron-5UTR	ENST00000505278	ENST00000468819		TCGA	LD	SKCM	TCGA-EE-A2A1-06A	PLXNA1	chr3	126710409	+	TNK2	chr3	195615477	-
Frame-shit	ENST00000378600	ENST00000445360		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
5CDS-intron	ENST00000378600	ENST00000454474		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
intron-3CDS	ENST00000378603	ENST00000445360		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
intron-intron	ENST00000378603	ENST00000454474		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
Frame-shit	ENST00000256996	ENST00000445360		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
5CDS-intron	ENST00000256996	ENST00000454474		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
Frame-shit	ENST00000378601	ENST00000445360		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
5CDS-intron	ENST00000378601	ENST00000454474		TCGA	LD	SKCM	TCGA-EE-A2A6-06A	DDB2	chr11	47238600	+	LRRC9	chr14	60530041	+
Frame-shit	ENST00000548256	ENST00000422156		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000548256	ENST00000540759		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000548256	ENST00000550465		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000548256	ENST00000354947		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000551420	ENST00000422156		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000551420	ENST00000540759		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000551420	ENST00000550465		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
5UTR-3CDS	ENST00000551420	ENST00000354947		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000300209	ENST00000422156		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000300209	ENST00000540759		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000300209	ENST00000550465		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000300209	ENST00000354947		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000552307	ENST00000422156		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000552307	ENST00000540759		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000552307	ENST00000550465		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
intron-3CDS	ENST00000552307	ENST00000354947		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000333012	ENST00000422156		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000333012	ENST00000540759		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000333012	ENST00000550465		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000333012	ENST00000354947		TCGA	LD	SKCM	TCGA-EE-A2GB-06A	METTL21B	chr12	58166911	+	PIP4K2C	chr12	57987808	+
Frame-shit	ENST00000331373	ENST00000356396		TCGA	LD	SKCM	TCGA-EE-A2GH-06A	POMK	chr8	42958973	+	LSS	chr21	47616181	-
Frame-shit	ENST00000331373	ENST00000397728		TCGA	LD	SKCM	TCGA-EE-A2GH-06A	POMK	chr8	42958973	+	LSS	chr21	47616181	-
Frame-shit	ENST00000331373	ENST00000457828		TCGA	LD	SKCM	TCGA-EE-A2GH-06A	POMK	chr8	42958973	+	LSS	chr21	47616181	-
Frame-shit	ENST00000331373	ENST00000522411		TCGA	LD	SKCM	TCGA-EE-A2GH-06A	POMK	chr8	42958973	+	LSS	chr21	47616181	-
5CDS-intron	ENST00000331373	ENST00000464357		TCGA	LD	SKCM	TCGA-EE-A2GH-06A	POMK	chr8	42958973	+	LSS	chr21	47616181	-
5UTR-3CDS	ENST00000344686	ENST00000225983		TCGA	LD	SKCM	TCGA-EE-A2GI-06A	MAP3K14	chr17	43342530	-	HDAC5	chr17	42171202	-
5UTR-3CDS	ENST00000344686	ENST00000393622		TCGA	LD	SKCM	TCGA-EE-A2GI-06A	MAP3K14	chr17	43342530	-	HDAC5	chr17	42171202	-
5UTR-3CDS	ENST00000344686	ENST00000336057		TCGA	LD	SKCM	TCGA-EE-A2GI-06A	MAP3K14	chr17	43342530	-	HDAC5	chr17	42171202	-
5UTR-3CDS	ENST00000344686	ENST00000586802		TCGA	LD	SKCM	TCGA-EE-A2GI-06A	MAP3K14	chr17	43342530	-	HDAC5	chr17	42171202	-
intron-5UTR	ENST00000523767	ENST00000351797		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000523767	ENST00000522858		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000523767	ENST00000520667		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-intron	ENST00000523767	ENST00000518946		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000523767	ENST00000520313		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000351797		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000522858		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000520667		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-intron	ENST00000261797	ENST00000518946		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000261797	ENST00000520313		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000351797		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000522858		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000520667		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-intron	ENST00000521752	ENST00000518946		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-5UTR	ENST00000521752	ENST00000520313		TCGA	LD	SKCM	TCGA-EE-A2GJ-06A	NDST1	chr5	149865586	+	FAM114A2	chr5	153414527	-
intron-3CDS	ENST00000372583	ENST00000343433		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000372583	ENST00000484327		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000372584	ENST00000343433		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000372584	ENST00000484327		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000247584	ENST00000343433		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000247584	ENST00000484327		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000429157	ENST00000343433		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000429157	ENST00000484327		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-3CDS	ENST00000460604	ENST00000343433		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
intron-5UTR	ENST00000460604	ENST00000484327		TCGA	LD	SKCM	TCGA-EE-A2GL-06A	HIVEP3	chr1	42501478	-	C1orf168	chr1	57233611	-
Frame-shit	ENST00000302538	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
5CDS-intron	ENST00000302538	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	SKCM	TCGA-EE-A2GN-06A	ABR	chr17	1082961	-	YWHAE	chr17	1268352	-
Frame-shit	ENST00000295598	ENST00000371120		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
Frame-shit	ENST00000295598	ENST00000317868		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000537345	ENST00000371120		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000537345	ENST00000317868		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000369496	ENST00000371120		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000369496	ENST00000317868		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000491156	ENST00000371120		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000491156	ENST00000317868		TCGA	LD	SKCM	TCGA-EE-A2GP-06A	ATP1A1	chr1	116916145	+	ATG4C	chr1	63329663	+
In-frame	ENST00000420843	ENST00000313010		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000420843	ENST00000393399		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000420843	ENST00000535099		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
5CDS-5UTR	ENST00000420843	ENST00000525772		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000393505	ENST00000313010		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000393505	ENST00000393399		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000393505	ENST00000535099		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
5CDS-5UTR	ENST00000393505	ENST00000525772		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000360025	ENST00000313010		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000360025	ENST00000393399		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
In-frame	ENST00000360025	ENST00000535099		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
5CDS-5UTR	ENST00000360025	ENST00000525772		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	ARRB1	chr11	75062632	-	PRCP	chr11	82549616	-
5CDS-5UTR	ENST00000356554	ENST00000421812		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	ZNF697	chr1	120168760	-
3UTR-5UTR	ENST00000482811	ENST00000421812		TCGA	LD	SKCM	TCGA-EE-A2GR-06A	MAN1A2	chr1	117911107	+	ZNF697	chr1	120168760	-
In-frame	ENST00000392857	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000392857	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000392857	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000392857	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000392857	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000392858	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000392858	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000392858	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000392858	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000392858	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000535373	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000535373	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000535373	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000535373	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000535373	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000536575	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000536575	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000536575	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000536575	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000536575	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000540442	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000540442	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000540442	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000540442	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000540442	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
Frame-shit	ENST00000264169	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000264169	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
In-frame	ENST00000264169	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000264169	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
5CDS-intron	ENST00000264169	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-3CDS	ENST00000542387	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-3CDS	ENST00000542387	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-3CDS	ENST00000542387	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-intron	ENST00000542387	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-intron	ENST00000542387	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-3CDS	ENST00000488761	ENST00000400384		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-3CDS	ENST00000488761	ENST00000540640		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-3CDS	ENST00000488761	ENST00000592595		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-intron	ENST00000488761	ENST00000588540		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-intron	ENST00000488761	ENST00000587823		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	ORC4	chr2	148709942	-	MAPK4	chr18	48255528	+
intron-intron	ENST00000588552	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000588552	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000588552	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000262963	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000262963	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000262963	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000372412	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000372412	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000372412	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000348075	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000348075	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000348075	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000357368	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000357368	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000357368	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000353284	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000353284	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000353284	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000587303	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000587303	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000587303	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000588012	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000588012	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000588012	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000592099	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000592099	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000592099	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000590509	ENST00000431232		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-intron	ENST00000590509	ENST00000250930		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
intron-5UTR	ENST00000590509	ENST00000476735		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	PTPRS	chr19	5293152	-	TMEM8A	chr16	434396	-
5UTR-3CDS	ENST00000474820	ENST00000392857		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-3CDS	ENST00000474820	ENST00000392858		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-3CDS	ENST00000474820	ENST00000535373		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-3CDS	ENST00000474820	ENST00000536575		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-3CDS	ENST00000474820	ENST00000540442		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-3CDS	ENST00000474820	ENST00000264169		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-3CDS	ENST00000474820	ENST00000542387		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5UTR-intron	ENST00000474820	ENST00000488761		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000392857		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000392858		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000535373		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000536575		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000540442		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000264169		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000348849	ENST00000542387		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5CDS-intron	ENST00000348849	ENST00000488761		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000392857		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000392858		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000535373		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000536575		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000540442		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000264169		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409075	ENST00000542387		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5CDS-intron	ENST00000409075	ENST00000488761		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000392857		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000392858		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000535373		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000536575		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000540442		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000264169		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409289	ENST00000542387		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5CDS-intron	ENST00000409289	ENST00000488761		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000392857		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000392858		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000535373		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000536575		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000540442		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000264169		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000392753	ENST00000542387		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5CDS-intron	ENST00000392753	ENST00000488761		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000392857		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000392858		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000535373		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000536575		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000540442		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000264169		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
In-frame	ENST00000409972	ENST00000542387		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
5CDS-intron	ENST00000409972	ENST00000488761		TCGA	LD	SKCM	TCGA-EE-A2GU-06A	RBMS1	chr2	161223727	-	ORC4	chr2	148701091	-
intron-3CDS	ENST00000398540	ENST00000250863		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000398540	ENST00000399444		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000542259	ENST00000250863		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000542259	ENST00000399444		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000497757	ENST00000250863		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000497757	ENST00000399444		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000478263	ENST00000250863		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
intron-3CDS	ENST00000478263	ENST00000399444		TCGA	LD	SKCM	TCGA-EE-A2M6-06A	FRMD4B	chr3	69591357	-	DAZL	chr3	16640105	-
In-frame	ENST00000341567	ENST00000246868		TCGA	LD	SKCM	TCGA-EE-A2M7-06A	TMEM248	chr7	66416122	+	SBDS	chr7	66460377	-
Frame-shit	ENST00000357710	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000357710	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000357710	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000357710	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000357710	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000324501	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000324501	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000324501	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000324501	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000324501	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000344094	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000344094	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000344094	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000344094	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000344094	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000261970	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000261970	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000261970	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000261970	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000261970	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000394164	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000394164	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000394164	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000394164	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000394164	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000557511	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000557511	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000557511	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000557511	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000557511	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000406768	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000406768	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000406768	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-3UTR	ENST00000406768	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
5CDS-intron	ENST00000406768	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-3CDS	ENST00000394157	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-intron	ENST00000394157	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-3UTR	ENST00000394157	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-3UTR	ENST00000394157	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-intron	ENST00000394157	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-3CDS	ENST00000553447	ENST00000372806		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-intron	ENST00000553447	ENST00000396731		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-3UTR	ENST00000553447	ENST00000372801		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-3UTR	ENST00000553447	ENST00000499879		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
intron-intron	ENST00000553447	ENST00000487587		TCGA	LD	SKCM	TCGA-EE-A2MC-06A	PSEN1	chr14	73664837	+	STK4	chr20	43703659	+
Frame-shit	ENST00000216254	ENST00000295297		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
5CDS-intron	ENST00000216254	ENST00000510958		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
5CDS-5UTR	ENST00000216254	ENST00000429690		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
5CDS-5UTR	ENST00000216254	ENST00000444304		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
Frame-shit	ENST00000396512	ENST00000295297		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
5CDS-intron	ENST00000396512	ENST00000510958		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
5CDS-5UTR	ENST00000396512	ENST00000429690		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
5CDS-5UTR	ENST00000396512	ENST00000444304		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
intron-3CDS	ENST00000466237	ENST00000295297		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
intron-intron	ENST00000466237	ENST00000510958		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
intron-5UTR	ENST00000466237	ENST00000429690		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
intron-5UTR	ENST00000466237	ENST00000444304		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	ACO2	chr22	41865186	+	C1QTNF7	chr4	15437360	+
Frame-shit	ENST00000405486	ENST00000308132		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
Frame-shit	ENST00000405486	ENST00000489363		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000405486	ENST00000461064		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
Frame-shit	ENST00000405486	ENST00000472884		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000356244	ENST00000308132		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000356244	ENST00000489363		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
Frame-shit	ENST00000356244	ENST00000461064		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000356244	ENST00000472884		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000455915	ENST00000308132		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000455915	ENST00000489363		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
Frame-shit	ENST00000455915	ENST00000461064		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000455915	ENST00000472884		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
intron-3CDS	ENST00000407260	ENST00000308132		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
intron-3CDS	ENST00000407260	ENST00000489363		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
intron-3CDS	ENST00000407260	ENST00000461064		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
intron-3CDS	ENST00000407260	ENST00000472884		TCGA	LD	SKCM	TCGA-EE-A2ME-06A	RANGAP1	chr22	41676937	-	FAM53A	chr4	1643334	-
In-frame	ENST00000336061	ENST00000331710		TCGA	LD	SKCM	TCGA-EE-A2MH-06A	RASSF3	chr12	65004523	+	TBK1	chr12	64889263	+
In-frame	ENST00000542104	ENST00000331710		TCGA	LD	SKCM	TCGA-EE-A2MH-06A	RASSF3	chr12	65004523	+	TBK1	chr12	64889263	+
3UTR-3CDS	ENST00000540088	ENST00000331710		TCGA	LD	SKCM	TCGA-EE-A2MH-06A	RASSF3	chr12	65004523	+	TBK1	chr12	64889263	+
5CDS-5UTR	ENST00000223357	ENST00000367306		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
5CDS-5UTR	ENST00000223357	ENST00000340006		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
5CDS-5UTR	ENST00000223357	ENST00000531916		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
5CDS-intron	ENST00000223357	ENST00000532460		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
5CDS-intron	ENST00000223357	ENST00000533432		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
5CDS-intron	ENST00000223357	ENST00000526723		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
5CDS-intron	ENST00000223357	ENST00000458271		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-5UTR	ENST00000454218	ENST00000367306		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-5UTR	ENST00000454218	ENST00000340006		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-5UTR	ENST00000454218	ENST00000531916		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000454218	ENST00000532460		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000454218	ENST00000533432		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000454218	ENST00000526723		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000454218	ENST00000458271		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-5UTR	ENST00000450684	ENST00000367306		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-5UTR	ENST00000450684	ENST00000340006		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-5UTR	ENST00000450684	ENST00000531916		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000450684	ENST00000532460		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000450684	ENST00000533432		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000450684	ENST00000526723		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-intron	ENST00000450684	ENST00000458271		TCGA	LD	SKCM	TCGA-EE-A2MK-06A	AEBP1	chr7	44147530	+	CSRP1	chr1	201476251	-
intron-3CDS	ENST00000412162	ENST00000366767		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-3CDS	ENST00000412162	ENST00000366769		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-3CDS	ENST00000412162	ENST00000366764		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-3CDS	ENST00000412162	ENST00000334218		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-3CDS	ENST00000412162	ENST00000366766		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-3CDS	ENST00000412162	ENST00000535525		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-3CDS	ENST00000412162	ENST00000366765		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
intron-intron	ENST00000412162	ENST00000488131		TCGA	LD	SKCM	TCGA-EE-A2ML-06A	MIR181A1HG	chr1	198906355	-	CDC42BPA	chr1	227279692	-
Frame-shit	ENST00000309137	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
Frame-shit	ENST00000309137	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
Frame-shit	ENST00000389447	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
Frame-shit	ENST00000389447	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
5UTR-3CDS	ENST00000566077	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
5UTR-3CDS	ENST00000566077	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
In-frame	ENST00000569266	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
In-frame	ENST00000569266	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
In-frame	ENST00000567439	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
In-frame	ENST00000567439	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
Frame-shit	ENST00000564108	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
Frame-shit	ENST00000564108	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
intron-3CDS	ENST00000562400	ENST00000417689		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
intron-3CDS	ENST00000562400	ENST00000317091		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	FAM192A	chr16	57207640	-	CES2	chr16	66971940	+
5CDS-intron	ENST00000373547	ENST00000473039		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000373547	ENST00000373624		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000373547	ENST00000542603		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000373547	ENST00000394219		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000373547	ENST00000373620		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000373547	ENST00000394215		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000373547	ENST00000373618		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000473039		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000373624		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000542603		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000394219		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000373620		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000394215		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000415905	ENST00000373618		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000473039		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000373624		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000542603		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000394219		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000373620		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000394215		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000451402	ENST00000373618		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000473039		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000373624		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000542603		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000394219		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000373620		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000394215		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5UTR-intron	ENST00000373546	ENST00000373618		TCGA	LD	SKCM	TCGA-EE-A2MM-06A	PPP6C	chr9	127933369	-	DENND1A	chr9	126285572	-
5CDS-intron	ENST00000326793	ENST00000410534		TCGA	LD	SKCM	TCGA-EE-A2MR-06A	ACAP2	chr3	195053757	-	SOX2-OT	chr3	181508461	+
intron-intron	ENST00000472860	ENST00000410534		TCGA	LD	SKCM	TCGA-EE-A2MR-06A	ACAP2	chr3	195053757	-	SOX2-OT	chr3	181508461	+
In-frame	ENST00000397498	ENST00000340415		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
In-frame	ENST00000397498	ENST00000402449		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5CDS-intron	ENST00000397498	ENST00000528438		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5CDS-intron	ENST00000397498	ENST00000392615		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5CDS-intron	ENST00000397498	ENST00000392614		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5CDS-intron	ENST00000397498	ENST00000392613		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5CDS-intron	ENST00000397498	ENST00000392612		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5CDS-intron	ENST00000397498	ENST00000392610		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-3CDS	ENST00000573392	ENST00000340415		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-3CDS	ENST00000573392	ENST00000402449		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000573392	ENST00000528438		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000573392	ENST00000392615		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000573392	ENST00000392614		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000573392	ENST00000392613		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000573392	ENST00000392612		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000573392	ENST00000392610		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-3CDS	ENST00000574938	ENST00000340415		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-3CDS	ENST00000574938	ENST00000402449		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000574938	ENST00000528438		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000574938	ENST00000392615		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000574938	ENST00000392614		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000574938	ENST00000392613		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000574938	ENST00000392612		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000574938	ENST00000392610		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-3CDS	ENST00000570561	ENST00000340415		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-3CDS	ENST00000570561	ENST00000402449		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000570561	ENST00000528438		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000570561	ENST00000392615		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000570561	ENST00000392614		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000570561	ENST00000392613		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000570561	ENST00000392612		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
5UTR-intron	ENST00000570561	ENST00000392610		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-3CDS	ENST00000576135	ENST00000340415		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-3CDS	ENST00000576135	ENST00000402449		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000576135	ENST00000528438		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000576135	ENST00000392615		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000576135	ENST00000392614		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000576135	ENST00000392613		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000576135	ENST00000392612		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
intron-intron	ENST00000576135	ENST00000392610		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	ARL16	chr17	79650566	-	RAB37	chr17	72725395	+
In-frame	ENST00000251076	ENST00000283228		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000251076	ENST00000440835		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000251076	ENST00000537619		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000251076	ENST00000378778		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000251076	ENST00000342084		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000251076	ENST00000549308		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
In-frame	ENST00000543779	ENST00000283228		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000543779	ENST00000440835		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000543779	ENST00000537619		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000543779	ENST00000378778		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000543779	ENST00000342084		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000543779	ENST00000549308		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
In-frame	ENST00000449909	ENST00000283228		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000449909	ENST00000440835		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000449909	ENST00000537619		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000449909	ENST00000378778		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000449909	ENST00000342084		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
5CDS-intron	ENST00000449909	ENST00000549308		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000560421	ENST00000283228		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000560421	ENST00000440835		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000560421	ENST00000537619		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000560421	ENST00000378778		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000560421	ENST00000342084		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-intron	ENST00000560421	ENST00000549308		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	DMXL2	chr15	51914656	-	PTPRR	chr12	71158558	-
intron-3CDS	ENST00000244289	ENST00000352591		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000244289	ENST00000351134		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000244289	ENST00000161559		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000244289	ENST00000403444		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000244289	ENST00000403461		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000244289	ENST00000488639		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000244289	ENST00000358394		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000244289	ENST00000308072		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000244289	ENST00000599389		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000602000	ENST00000352591		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000602000	ENST00000351134		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000602000	ENST00000161559		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000602000	ENST00000403444		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-3CDS	ENST00000602000	ENST00000403461		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000602000	ENST00000488639		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000602000	ENST00000358394		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000602000	ENST00000308072		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
intron-intron	ENST00000602000	ENST00000599389		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	LIPE	chr19	42927571	-	CEACAM1	chr19	43016631	-
5CDS-intron	ENST00000413953	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000413953	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000347140	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000347140	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000358907	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000358907	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000402412	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000402412	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000441731	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000441731	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000403821	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-intron	ENST00000403821	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5UTR-intron	ENST00000546843	ENST00000551553		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5UTR-intron	ENST00000546843	ENST00000266646		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	R3HDM2	chr12	57660514	-	INHBE	chr12	57849527	+
5CDS-3UTR	ENST00000311672	ENST00000498443		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	UQCRH	chr1	46774799	+	TSPAN1	chr1	46649863	+
5CDS-3UTR	ENST00000311672	ENST00000372003		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	UQCRH	chr1	46774799	+	TSPAN1	chr1	46649863	+
3UTR-3UTR	ENST00000486951	ENST00000498443		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	UQCRH	chr1	46774799	+	TSPAN1	chr1	46649863	+
3UTR-3UTR	ENST00000486951	ENST00000372003		TCGA	LD	SKCM	TCGA-EE-A2MS-06A	UQCRH	chr1	46774799	+	TSPAN1	chr1	46649863	+
5UTR-5UTR	ENST00000378609	ENST00000377022		TCGA	LD	SKCM	TCGA-EE-A3AA-06A	GNB1	chr1	1822259	-	CASZ1	chr1	10765601	-
5UTR-5UTR	ENST00000378609	ENST00000344008		TCGA	LD	SKCM	TCGA-EE-A3AA-06A	GNB1	chr1	1822259	-	CASZ1	chr1	10765601	-
5UTR-intron	ENST00000378609	ENST00000478728		TCGA	LD	SKCM	TCGA-EE-A3AA-06A	GNB1	chr1	1822259	-	CASZ1	chr1	10765601	-
5UTR-5UTR	ENST00000472614	ENST00000377022		TCGA	LD	SKCM	TCGA-EE-A3AA-06A	GNB1	chr1	1822259	-	CASZ1	chr1	10765601	-
5UTR-5UTR	ENST00000472614	ENST00000344008		TCGA	LD	SKCM	TCGA-EE-A3AA-06A	GNB1	chr1	1822259	-	CASZ1	chr1	10765601	-
5UTR-intron	ENST00000472614	ENST00000478728		TCGA	LD	SKCM	TCGA-EE-A3AA-06A	GNB1	chr1	1822259	-	CASZ1	chr1	10765601	-
In-frame	ENST00000368503	ENST00000368494		TCGA	LD	SKCM	TCGA-EE-A3AB-06A	DCBLD1	chr6	117825142	+	NUS1	chr6	118014205	+
In-frame	ENST00000296955	ENST00000368494		TCGA	LD	SKCM	TCGA-EE-A3AB-06A	DCBLD1	chr6	117825142	+	NUS1	chr6	118014205	+
In-frame	ENST00000338728	ENST00000368494		TCGA	LD	SKCM	TCGA-EE-A3AB-06A	DCBLD1	chr6	117825142	+	NUS1	chr6	118014205	+
intron-3CDS	ENST00000534777	ENST00000368494		TCGA	LD	SKCM	TCGA-EE-A3AB-06A	DCBLD1	chr6	117825142	+	NUS1	chr6	118014205	+
In-frame	ENST00000368445	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
5CDS-intron	ENST00000368445	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
In-frame	ENST00000368449	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
5CDS-intron	ENST00000368449	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
In-frame	ENST00000448116	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
5CDS-intron	ENST00000448116	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
Frame-shit	ENST00000368450	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
5CDS-intron	ENST00000368450	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
Frame-shit	ENST00000368453	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
5CDS-intron	ENST00000368453	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
In-frame	ENST00000606391	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
5CDS-intron	ENST00000606391	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
intron-3CDS	ENST00000490667	ENST00000361170		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
intron-intron	ENST00000490667	ENST00000498755		TCGA	LD	SKCM	TCGA-EE-A3AD-06A	SHC1	chr1	154940680	-	IQGAP3	chr1	156498874	-
Frame-shit	ENST00000529689	ENST00000398309		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529689	ENST00000376104		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529689	ENST00000418306		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529689	ENST00000280241		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529689	ENST00000543673		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000376106		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000330014		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000537455		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000524982		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000532653		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000531015		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529689	ENST00000398301		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529689	ENST00000426717		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529689	ENST00000404783		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529689	ENST00000398304		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529689	ENST00000530800		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529689	ENST00000472545		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000455220	ENST00000398309		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000455220	ENST00000376104		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000455220	ENST00000418306		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000455220	ENST00000280241		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000455220	ENST00000543673		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000376106		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000330014		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000537455		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000524982		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000532653		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000531015		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000455220	ENST00000398301		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000455220	ENST00000426717		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000455220	ENST00000404783		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000455220	ENST00000398304		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000455220	ENST00000530800		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000455220	ENST00000472545		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525504	ENST00000398309		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525504	ENST00000376104		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525504	ENST00000418306		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525504	ENST00000280241		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525504	ENST00000543673		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000376106		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000330014		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000537455		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000524982		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000532653		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000531015		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525504	ENST00000398301		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525504	ENST00000426717		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525504	ENST00000404783		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525504	ENST00000398304		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525504	ENST00000530800		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525504	ENST00000472545		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525503	ENST00000398309		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525503	ENST00000376104		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525503	ENST00000418306		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525503	ENST00000280241		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000525503	ENST00000543673		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000376106		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000330014		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000537455		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000524982		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000532653		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000531015		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000525503	ENST00000398301		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525503	ENST00000426717		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525503	ENST00000404783		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525503	ENST00000398304		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525503	ENST00000530800		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000525503	ENST00000472545		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000529611	ENST00000398309		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000529611	ENST00000376104		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000529611	ENST00000418306		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000529611	ENST00000280241		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-3CDS	ENST00000529611	ENST00000543673		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000376106		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000330014		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000537455		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000524982		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000532653		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000531015		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-5UTR	ENST00000529611	ENST00000398301		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000529611	ENST00000426717		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000529611	ENST00000404783		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000529611	ENST00000398304		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000529611	ENST00000530800		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
intron-intron	ENST00000529611	ENST00000472545		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529073	ENST00000398309		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529073	ENST00000376104		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529073	ENST00000418306		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529073	ENST00000280241		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
Frame-shit	ENST00000529073	ENST00000543673		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000376106		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000330014		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000537455		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000524982		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000532653		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000531015		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000529073	ENST00000398301		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529073	ENST00000426717		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529073	ENST00000404783		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529073	ENST00000398304		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529073	ENST00000530800		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-intron	ENST00000529073	ENST00000472545		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	CCDC90B	chr11	82996916	-	DLG2	chr11	83585531	-
5CDS-5UTR	ENST00000353442	ENST00000513200		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000353442	ENST00000427991		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000353442	ENST00000312498		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000353442	ENST00000329378		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5UTR-5UTR	ENST00000359422	ENST00000513200		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5UTR-5UTR	ENST00000359422	ENST00000427991		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5UTR-5UTR	ENST00000359422	ENST00000312498		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5UTR-5UTR	ENST00000359422	ENST00000329378		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000354505	ENST00000513200		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000354505	ENST00000427991		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000354505	ENST00000312498		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000354505	ENST00000329378		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000540390	ENST00000513200		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000540390	ENST00000427991		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000540390	ENST00000312498		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5CDS-5UTR	ENST00000540390	ENST00000329378		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
intron-5UTR	ENST00000430825	ENST00000513200		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
intron-5UTR	ENST00000430825	ENST00000427991		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
intron-5UTR	ENST00000430825	ENST00000312498		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
intron-5UTR	ENST00000430825	ENST00000329378		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	LMBR1	chr7	156589083	-	KIAA0825	chr5	93872832	-
5UTR-3CDS	ENST00000409718	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409718	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000409718	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000358677	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000358677	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000358677	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409988	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409988	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000409988	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409385	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409385	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000409385	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000451764	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000451764	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000451764	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000360760	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000360760	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000360760	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409140	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-3CDS	ENST00000409140	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5UTR-5UTR	ENST00000409140	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
Frame-shit	ENST00000409755	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
Frame-shit	ENST00000409755	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
5CDS-5UTR	ENST00000409755	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
intron-3CDS	ENST00000409151	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
intron-3CDS	ENST00000409151	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
intron-5UTR	ENST00000409151	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
intron-3CDS	ENST00000460095	ENST00000359878		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
intron-3CDS	ENST00000460095	ENST00000409157		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
intron-5UTR	ENST00000460095	ENST00000468413		TCGA	LD	SKCM	TCGA-EE-A3AG-06A	SPATS2L	chr2	201194203	+	KCTD18	chr2	201357997	-
In-frame	ENST00000367765	ENST00000368069		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
In-frame	ENST00000367765	ENST00000241704		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
Frame-shit	ENST00000367767	ENST00000368069		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
Frame-shit	ENST00000367767	ENST00000241704		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
Frame-shit	ENST00000361580	ENST00000368069		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
Frame-shit	ENST00000361580	ENST00000241704		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
In-frame	ENST00000538366	ENST00000368069		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
In-frame	ENST00000538366	ENST00000241704		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
Frame-shit	ENST00000540905	ENST00000368069		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
Frame-shit	ENST00000540905	ENST00000241704		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
intron-3CDS	ENST00000490550	ENST00000368069		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
intron-3CDS	ENST00000490550	ENST00000241704		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	KIFAP3	chr1	169923152	-	COPA	chr1	160283915	-
intron-5UTR	ENST00000337959	ENST00000248929		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000337959	ENST00000454798		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000263246	ENST00000248929		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000263246	ENST00000454798		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000407585	ENST00000248929		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
5UTR-5UTR	ENST00000407585	ENST00000454798		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000403744	ENST00000248929		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000403744	ENST00000454798		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000402229	ENST00000248929		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
intron-5UTR	ENST00000402229	ENST00000454798		TCGA	LD	SKCM	TCGA-EE-A3AH-06A	PACSIN2	chr22	43355805	-	SGSM3	chr22	40796700	+
5CDS-5UTR	ENST00000269391	ENST00000389760		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000269391	ENST00000313080		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000269391	ENST00000591885		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000269391	ENST00000592378		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000319945	ENST00000389760		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000319945	ENST00000313080		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000319945	ENST00000591885		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
5CDS-5UTR	ENST00000319945	ENST00000592378		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000589912	ENST00000389760		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000589912	ENST00000313080		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000589912	ENST00000591885		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000589912	ENST00000592378		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000592271	ENST00000389760		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000592271	ENST00000313080		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000592271	ENST00000591885		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-5UTR	ENST00000592271	ENST00000592378		TCGA	LD	SKCM	TCGA-EE-A3J4-06A	RNF157	chr17	74208445	-	RHBDF2	chr17	74483991	-
intron-3CDS	ENST00000530157	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000530157	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
In-frame	ENST00000525451	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000525451	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
In-frame	ENST00000308162	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000308162	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-3CDS	ENST00000527344	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000527344	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-3CDS	ENST00000531407	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000531407	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-3CDS	ENST00000524553	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000524553	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-3CDS	ENST00000534769	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000534769	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-3CDS	ENST00000531413	ENST00000343304		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000531413	ENST00000472710		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	CFL1	chr11	65625568	-	LRRC41	chr1	46752171	-
5CDS-3UTR	ENST00000271069	ENST00000532620		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
5CDS-3UTR	ENST00000271069	ENST00000608857		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
5CDS-3UTR	ENST00000373672	ENST00000532620		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
5CDS-3UTR	ENST00000373672	ENST00000608857		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
intron-3UTR	ENST00000461217	ENST00000532620		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
intron-3UTR	ENST00000461217	ENST00000608857		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
intron-3UTR	ENST00000373668	ENST00000532620		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
intron-3UTR	ENST00000373668	ENST00000608857		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	COL16A1	chr1	32127935	-	TSGA10IP	chr11	65714351	+
5CDS-5UTR	ENST00000296051	ENST00000309170		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	HPS3	chr3	148847727	+	P2RY14	chr3	150937430	-
5CDS-5UTR	ENST00000296051	ENST00000424796		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	HPS3	chr3	148847727	+	P2RY14	chr3	150937430	-
5CDS-5UTR	ENST00000460120	ENST00000309170		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	HPS3	chr3	148847727	+	P2RY14	chr3	150937430	-
5CDS-5UTR	ENST00000460120	ENST00000424796		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	HPS3	chr3	148847727	+	P2RY14	chr3	150937430	-
3UTR-5UTR	ENST00000494327	ENST00000309170		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	HPS3	chr3	148847727	+	P2RY14	chr3	150937430	-
3UTR-5UTR	ENST00000494327	ENST00000424796		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	HPS3	chr3	148847727	+	P2RY14	chr3	150937430	-
5UTR-intron	ENST00000282488	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
5UTR-intron	ENST00000282486	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
5UTR-intron	ENST00000355460	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
5UTR-intron	ENST00000493459	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
5UTR-intron	ENST00000324210	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000498502	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000545754	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000357472	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000324196	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000485910	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000463374	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000492948	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-intron	ENST00000485509	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
3UTR-intron	ENST00000461436	ENST00000482639		TCGA	LD	SKCM	TCGA-EE-A3JB-06A	MBNL1	chr3	151986881	+	CPHL1P	chr3	148965283	-
intron-3CDS	ENST00000370440	ENST00000370192		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-intron	ENST00000370440	ENST00000474241		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-intron	ENST00000370440	ENST00000423006		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-intron	ENST00000370440	ENST00000306031		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-3CDS	ENST00000347275	ENST00000370192		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-intron	ENST00000347275	ENST00000474241		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-intron	ENST00000347275	ENST00000423006		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-intron	ENST00000347275	ENST00000306031		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-3CDS	ENST00000337393	ENST00000370192		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000337393	ENST00000474241		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000337393	ENST00000423006		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000337393	ENST00000306031		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-3CDS	ENST00000361321	ENST00000370192		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000361321	ENST00000474241		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000361321	ENST00000423006		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000361321	ENST00000306031		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-3CDS	ENST00000467231	ENST00000370192		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000467231	ENST00000474241		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000467231	ENST00000423006		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
5UTR-intron	ENST00000467231	ENST00000306031		TCGA	LD	SKCM	TCGA-EE-A3JH-06A	ZNF644	chr1	91487547	-	DPYD	chr1	97700550	-
intron-3CDS	ENST00000324331	ENST00000543878		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	FARS2	chr6	5261893	+	SYCP2L	chr6	10930603	+
intron-3CDS	ENST00000324331	ENST00000283141		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	FARS2	chr6	5261893	+	SYCP2L	chr6	10930603	+
intron-intron	ENST00000324331	ENST00000465872		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	FARS2	chr6	5261893	+	SYCP2L	chr6	10930603	+
5UTR-3CDS	ENST00000274680	ENST00000543878		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	FARS2	chr6	5261893	+	SYCP2L	chr6	10930603	+
5UTR-3CDS	ENST00000274680	ENST00000283141		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	FARS2	chr6	5261893	+	SYCP2L	chr6	10930603	+
5UTR-intron	ENST00000274680	ENST00000465872		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	FARS2	chr6	5261893	+	SYCP2L	chr6	10930603	+
5CDS-intron	ENST00000330636	ENST00000379350		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000379348		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000332995		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000482982		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000379345		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000457702		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000379335		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000330636	ENST00000379329		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000379350		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000379348		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000332995		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000482982		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000379345		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000457702		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000379335		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000468929	ENST00000379329		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000379350		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000379348		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000332995		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000482982		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000379345		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000457702		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000379335		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000464010	ENST00000379329		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000379350		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000379348		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000332995		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000482982		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000379345		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000457702		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000379335		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000480566	ENST00000379329		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000379350		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000379348		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000332995		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000482982		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000379345		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000457702		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000379335		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000500576	ENST00000379329		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000379350		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000379348		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000332995		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000482982		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000379345		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000457702		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000379335		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
intron-intron	ENST00000606472	ENST00000379329		TCGA	LD	SKCM	TCGA-EE-A3JI-06A	LYRM4	chr6	5260881	-	PHACTR1	chr6	13278500	+
5CDS-intron	ENST00000398073	ENST00000393791		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000398073	ENST00000356411		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000398073	ENST00000424809		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000398073	ENST00000393797		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000398073	ENST00000550288		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000398073	ENST00000430041		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000398073	ENST00000550454		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000393791		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000356411		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000424809		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000393797		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000550288		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000430041		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
5CDS-intron	ENST00000548823	ENST00000550454		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000393791		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000356411		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000424809		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000393797		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000550288		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000430041		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000547701	ENST00000550454		TCGA	LD	SKCM	TCGA-ER-A193-06A	CTDSP2	chr12	58240155	-	ARHGAP9	chr12	57874617	-
intron-intron	ENST00000548589	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-5UTR	ENST00000548589	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000548589	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000548589	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000552699	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-5UTR	ENST00000552699	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000552699	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000552699	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000267115	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-5UTR	ENST00000267115	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000267115	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000267115	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000549385	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-5UTR	ENST00000549385	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000549385	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
5UTR-intron	ENST00000549385	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000423828	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-5UTR	ENST00000423828	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000423828	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000423828	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000395006	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-5UTR	ENST00000395006	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000395006	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000395006	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000547798	ENST00000444214		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-5UTR	ENST00000547798	ENST00000550765		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000547798	ENST00000552878		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-intron	ENST00000547798	ENST00000453172		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMBIM6	chr12	50135394	+	FKBP11	chr12	49319461	-
intron-5UTR	ENST00000551577	ENST00000536769		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000551577	ENST00000538617		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000551577	ENST00000546120		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
intron-5UTR	ENST00000551577	ENST00000339647		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
intron-intron	ENST00000551577	ENST00000536661		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000266534	ENST00000536769		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000266534	ENST00000538617		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000266534	ENST00000546120		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000266534	ENST00000339647		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-intron	ENST00000266534	ENST00000536661		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000536799	ENST00000536769		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000536799	ENST00000538617		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000536799	ENST00000546120		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-5UTR	ENST00000536799	ENST00000339647		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
5CDS-intron	ENST00000536799	ENST00000536661		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000546978	ENST00000536769		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000546978	ENST00000538617		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000546978	ENST00000546120		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
3UTR-5UTR	ENST00000546978	ENST00000339647		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
3UTR-intron	ENST00000546978	ENST00000536661		TCGA	LD	SKCM	TCGA-ER-A193-06A	TMEM117	chr12	44770507	+	UBC	chr12	125398320	-
Frame-shit	ENST00000448120	ENST00000452611		TCGA	LD	SKCM	TCGA-ER-A193-06A	TULP3	chr12	3000154	+	PRMT8	chr12	3677872	+
Frame-shit	ENST00000448120	ENST00000382622		TCGA	LD	SKCM	TCGA-ER-A193-06A	TULP3	chr12	3000154	+	PRMT8	chr12	3677872	+
5CDS-3UTR	ENST00000448120	ENST00000261252		TCGA	LD	SKCM	TCGA-ER-A193-06A	TULP3	chr12	3000154	+	PRMT8	chr12	3677872	+
Frame-shit	ENST00000397132	ENST00000452611		TCGA	LD	SKCM	TCGA-ER-A193-06A	TULP3	chr12	3000154	+	PRMT8	chr12	3677872	+
Frame-shit	ENST00000397132	ENST00000382622		TCGA	LD	SKCM	TCGA-ER-A193-06A	TULP3	chr12	3000154	+	PRMT8	chr12	3677872	+
5CDS-3UTR	ENST00000397132	ENST00000261252		TCGA	LD	SKCM	TCGA-ER-A193-06A	TULP3	chr12	3000154	+	PRMT8	chr12	3677872	+
3UTR-3CDS	ENST00000505350	ENST00000395634		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000450761		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000509025		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000379671		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000257435		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000447165		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000446294		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-3CDS	ENST00000505350	ENST00000515855		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000507742		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000509979		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000419114		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000509427		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000453526		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000455559		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
3UTR-5UTR	ENST00000505350	ENST00000508870		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000395634		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000450761		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000509025		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000379671		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000257435		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000447165		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000446294		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-3CDS	ENST00000457016	ENST00000515855		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000507742		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000509979		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000419114		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000509427		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000453526		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000455559		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
5UTR-5UTR	ENST00000457016	ENST00000508870		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000395634		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000450761		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000509025		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000379671		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000257435		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000447165		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000446294		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000257430	ENST00000515855		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000507742		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000509979		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000419114		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000509427		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000453526		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000455559		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000257430	ENST00000508870		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000395634		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000450761		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000509025		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000379671		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000257435		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000447165		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000446294		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000508376	ENST00000515855		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000507742		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000509979		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000419114		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000509427		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000453526		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000455559		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-5UTR	ENST00000508376	ENST00000508870		TCGA	LD	SKCM	TCGA-ER-A195-06A	APC	chr5	112043579	+	NREP	chr5	111071204	-
intron-3CDS	ENST00000284049	ENST00000241436		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3CDS	ENST00000284049	ENST00000352007		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000284049	ENST00000506928		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000284049	ENST00000515295		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000284049	ENST00000508526		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000284049	ENST00000504026		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-5UTR	ENST00000284049	ENST00000380481		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3CDS	ENST00000511067	ENST00000241436		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3CDS	ENST00000511067	ENST00000352007		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000511067	ENST00000506928		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000511067	ENST00000515295		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000511067	ENST00000508526		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3UTR	ENST00000511067	ENST00000504026		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-5UTR	ENST00000511067	ENST00000380481		TCGA	LD	SKCM	TCGA-ER-A195-06A	CHD1	chr5	98264243	-	POLK	chr5	74848297	+
intron-3CDS	ENST00000602063	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
intron-3CDS	ENST00000602063	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
intron-3CDS	ENST00000602063	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000594083	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000594083	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000594083	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000376716	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000376716	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000376716	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
In-frame	ENST00000391795	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
In-frame	ENST00000391795	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
In-frame	ENST00000391795	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000598071	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000598071	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000598071	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000597747	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000597747	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000597747	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000595114	ENST00000221485		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000595114	ENST00000543531		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3CDS	ENST00000595114	ENST00000600601		TCGA	LD	SKCM	TCGA-ER-A195-06A	ZNF615	chr19	52511394	-	SLC17A7	chr19	49936217	-
5UTR-3UTR	ENST00000554546	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000554546	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000554546	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000554546	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000554546	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000356296	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000356296	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000356296	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000356296	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000356296	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000557597	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000557597	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000557597	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000557597	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000557597	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555238	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555238	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555238	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555238	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555238	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000355058	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000355058	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000355058	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000355058	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000355058	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000359560	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000359560	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000359560	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000359560	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000359560	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555394	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555394	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555394	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555394	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000555394	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000454166	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000454166	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000454166	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000454166	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000454166	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000544991	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000544991	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000544991	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000544991	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000544991	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000560335	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000560335	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000560335	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000560335	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000560335	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000555738	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000555738	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000555738	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000555738	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000555738	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000559312	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000559312	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000559312	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000559312	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000559312	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000554521	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000554521	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000554521	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000554521	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000554521	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000535282	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000535282	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000535282	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000535282	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000535282	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000556600	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000556600	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000556600	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000556600	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3UTR	ENST00000556600	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000556772	ENST00000555245		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000556772	ENST00000556605		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000556772	ENST00000336643		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000556772	ENST00000031146		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
intron-3UTR	ENST00000556772	ENST00000557046		TCGA	LD	SKCM	TCGA-ER-A196-01A	NUMB	chr14	73876645	-	SLC39A9	chr14	69890811	+
5UTR-3CDS	ENST00000541920	ENST00000340001		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5UTR-3CDS	ENST00000541920	ENST00000453985		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5UTR-3CDS	ENST00000541920	ENST00000370732		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5UTR-intron	ENST00000541920	ENST00000482072		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5UTR-intron	ENST00000541920	ENST00000495634		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000300441	ENST00000340001		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000300441	ENST00000453985		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000300441	ENST00000370732		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000300441	ENST00000482072		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000300441	ENST00000495634		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000504392	ENST00000340001		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000504392	ENST00000453985		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000504392	ENST00000370732		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000504392	ENST00000482072		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000504392	ENST00000495634		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000427954	ENST00000340001		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000427954	ENST00000453985		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000427954	ENST00000370732		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000427954	ENST00000482072		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000427954	ENST00000495634		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000502667	ENST00000340001		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000502667	ENST00000453985		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
In-frame	ENST00000502667	ENST00000370732		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000502667	ENST00000482072		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
5CDS-intron	ENST00000502667	ENST00000495634		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
intron-3CDS	ENST00000506085	ENST00000340001		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
intron-3CDS	ENST00000506085	ENST00000453985		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
intron-3CDS	ENST00000506085	ENST00000370732		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
intron-intron	ENST00000506085	ENST00000482072		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
intron-intron	ENST00000506085	ENST00000495634		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACSF2	chr17	48503750	+	ABCA9	chr17	67020494	-
intron-5UTR	ENST00000263640	ENST00000257904		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000263640	ENST00000312990		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-intron	ENST00000263640	ENST00000549606		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000263640	ENST00000540325		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000263640	ENST00000551888		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000409283	ENST00000257904		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000409283	ENST00000312990		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-intron	ENST00000409283	ENST00000549606		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000409283	ENST00000540325		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000409283	ENST00000551888		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000434821	ENST00000257904		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000434821	ENST00000312990		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
5UTR-intron	ENST00000434821	ENST00000549606		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000434821	ENST00000540325		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
5UTR-5UTR	ENST00000434821	ENST00000551888		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000410057	ENST00000257904		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000410057	ENST00000312990		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-intron	ENST00000410057	ENST00000549606		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000410057	ENST00000540325		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000410057	ENST00000551888		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000487456	ENST00000257904		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000487456	ENST00000312990		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-intron	ENST00000487456	ENST00000549606		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000487456	ENST00000540325		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
intron-5UTR	ENST00000487456	ENST00000551888		TCGA	LD	SKCM	TCGA-ER-A197-06A	ACVR1	chr2	158732308	-	CDK4	chr12	58145519	-
In-frame	ENST00000350026	ENST00000394885		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000350026	ENST00000320963		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
5CDS-intron	ENST00000350026	ENST00000394883		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000346085	ENST00000394885		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000346085	ENST00000320963		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
5CDS-intron	ENST00000346085	ENST00000394883		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000367148	ENST00000394885		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000367148	ENST00000320963		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
5CDS-intron	ENST00000367148	ENST00000394883		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000275248	ENST00000394885		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000275248	ENST00000320963		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
5CDS-intron	ENST00000275248	ENST00000394883		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
intron-3CDS	ENST00000478761	ENST00000394885		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
intron-3CDS	ENST00000478761	ENST00000320963		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
intron-intron	ENST00000478761	ENST00000394883		TCGA	LD	SKCM	TCGA-ER-A197-06A	ARID1B	chr6	157150555	+	RCN2	chr15	77224702	+
In-frame	ENST00000257287	ENST00000366481		TCGA	LD	SKCM	TCGA-ER-A197-06A	CEP135	chr4	56847545	+	TRIM58	chr1	248023919	+
intron-3CDS	ENST00000422247	ENST00000366481		TCGA	LD	SKCM	TCGA-ER-A197-06A	CEP135	chr4	56847545	+	TRIM58	chr1	248023919	+
5UTR-3CDS	ENST00000258711	ENST00000399518		TCGA	LD	SKCM	TCGA-ER-A197-06A	CHST12	chr7	2443280	+	PLA2G4E	chr15	42276817	-
5UTR-3CDS	ENST00000258711	ENST00000413860		TCGA	LD	SKCM	TCGA-ER-A197-06A	CHST12	chr7	2443280	+	PLA2G4E	chr15	42276817	-
5CDS-5UTR	ENST00000228027	ENST00000528105		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
5CDS-5UTR	ENST00000228027	ENST00000304511		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
5CDS-5UTR	ENST00000228027	ENST00000532180		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
5CDS-5UTR	ENST00000376262	ENST00000528105		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
5CDS-5UTR	ENST00000376262	ENST00000304511		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
5CDS-5UTR	ENST00000376262	ENST00000532180		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
3UTR-5UTR	ENST00000605608	ENST00000528105		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
3UTR-5UTR	ENST00000605608	ENST00000304511		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
3UTR-5UTR	ENST00000605608	ENST00000532180		TCGA	LD	SKCM	TCGA-ER-A197-06A	DGAT2	chr11	75480157	+	TMEM126A	chr11	85365107	+
5CDS-3UTR	ENST00000295666	ENST00000483271		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5CDS-5UTR	ENST00000295666	ENST00000366513		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5CDS-5UTR	ENST00000295666	ENST00000366512		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5CDS-3UTR	ENST00000537922	ENST00000483271		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5CDS-5UTR	ENST00000537922	ENST00000366513		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5CDS-5UTR	ENST00000537922	ENST00000366512		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5UTR-3UTR	ENST00000512512	ENST00000483271		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5UTR-5UTR	ENST00000512512	ENST00000366513		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
5UTR-5UTR	ENST00000512512	ENST00000366512		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	CNST	chr1	246754814	+
In-frame	ENST00000295666	ENST00000541913		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000295666	ENST00000397168		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000295666	ENST00000572969		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000295666	ENST00000355380		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000295666	ENST00000575375		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000295666	ENST00000573128		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000295666	ENST00000268981		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000541913		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000397168		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000572969		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000355380		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000575375		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000573128		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
In-frame	ENST00000537922	ENST00000268981		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000541913		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000397168		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000572969		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000355380		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000575375		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000573128		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5UTR-3CDS	ENST00000512512	ENST00000268981		TCGA	LD	SKCM	TCGA-ER-A197-06A	IGFBP7	chr4	57906990	-	SPATA22	chr17	3349895	-
5CDS-5UTR	ENST00000328879	ENST00000456090		TCGA	LD	SKCM	TCGA-ER-A197-06A	KLHL22	chr22	20843272	-	SMCR2	chr17	17578836	-
5UTR-5UTR	ENST00000440659	ENST00000456090		TCGA	LD	SKCM	TCGA-ER-A197-06A	KLHL22	chr22	20843272	-	SMCR2	chr17	17578836	-
5UTR-5UTR	ENST00000470335	ENST00000456090		TCGA	LD	SKCM	TCGA-ER-A197-06A	KLHL22	chr22	20843272	-	SMCR2	chr17	17578836	-
5CDS-intron	ENST00000409261	ENST00000409869		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000409261	ENST00000295095		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000409261	ENST00000473426		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000409213	ENST00000409869		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000409213	ENST00000295095		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000409213	ENST00000473426		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000405974	ENST00000409869		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000405974	ENST00000295095		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000405974	ENST00000473426		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000317721	ENST00000409869		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000317721	ENST00000295095		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
5CDS-intron	ENST00000317721	ENST00000473426		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
intron-intron	ENST00000473859	ENST00000409869		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
intron-intron	ENST00000473859	ENST00000295095		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
intron-intron	ENST00000473859	ENST00000473426		TCGA	LD	SKCM	TCGA-ER-A197-06A	NCKAP5	chr2	133971288	-	ARHGAP15	chr2	144244942	+
In-frame	ENST00000296802	ENST00000409494		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA13	chr5	140358534	+
In-frame	ENST00000296802	ENST00000289272		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA13	chr5	140358534	+
3UTR-3CDS	ENST00000513356	ENST00000409494		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA13	chr5	140358534	+
3UTR-3CDS	ENST00000513356	ENST00000289272		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHA13	chr5	140358534	+
In-frame	ENST00000296802	ENST00000253807		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHAC1	chr5	140358534	+
5CDS-intron	ENST00000296802	ENST00000409700		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHAC1	chr5	140358534	+
3UTR-3CDS	ENST00000513356	ENST00000253807		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHAC1	chr5	140358534	+
3UTR-intron	ENST00000513356	ENST00000409700		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHAC1	chr5	140358534	+
In-frame	ENST00000296802	ENST00000289269		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHAC2	chr5	140358534	+
3UTR-3CDS	ENST00000513356	ENST00000289269		TCGA	LD	SKCM	TCGA-ER-A197-06A	NSA2	chr5	74063188	+	PCDHAC2	chr5	140358534	+
5UTR-3CDS	ENST00000397195	ENST00000574322		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
5UTR-3CDS	ENST00000397195	ENST00000573600		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
5UTR-3CDS	ENST00000397195	ENST00000318988		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
5UTR-5UTR	ENST00000397195	ENST00000572043		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
3UTR-3CDS	ENST00000572915	ENST00000574322		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
3UTR-3CDS	ENST00000572915	ENST00000573600		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
3UTR-3CDS	ENST00000572915	ENST00000318988		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
3UTR-5UTR	ENST00000572915	ENST00000572043		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
intron-3CDS	ENST00000451360	ENST00000574322		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
intron-3CDS	ENST00000451360	ENST00000573600		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
intron-3CDS	ENST00000451360	ENST00000318988		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
intron-5UTR	ENST00000451360	ENST00000572043		TCGA	LD	SKCM	TCGA-ER-A197-06A	PAFAH1B1	chr17	2497300	+	CTDNEP1	chr17	7150662	-
In-frame	ENST00000367384	ENST00000299300		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367384	ENST00000544368		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367384	ENST00000543146		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367378	ENST00000299300		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367378	ENST00000544368		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367378	ENST00000543146		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000464889	ENST00000299300		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000464889	ENST00000544368		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000464889	ENST00000543146		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367380	ENST00000299300		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367380	ENST00000544368		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000367380	ENST00000543146		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000544496	ENST00000299300		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000544496	ENST00000544368		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000544496	ENST00000543146		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
intron-3CDS	ENST00000480010	ENST00000299300		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
intron-3CDS	ENST00000480010	ENST00000544368		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
intron-3CDS	ENST00000480010	ENST00000543146		TCGA	LD	SKCM	TCGA-ER-A197-06A	PCMT1	chr6	150094305	+	CCT2	chr12	69981285	+
In-frame	ENST00000536534	ENST00000283243		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
In-frame	ENST00000536534	ENST00000392771		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
5CDS-intron	ENST00000536534	ENST00000460710		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
intron-3CDS	ENST00000427495	ENST00000283243		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
intron-3CDS	ENST00000427495	ENST00000392771		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
intron-intron	ENST00000427495	ENST00000460710		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
5UTR-3CDS	ENST00000442594	ENST00000283243		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
5UTR-3CDS	ENST00000442594	ENST00000392771		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
5UTR-intron	ENST00000442594	ENST00000460710		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
intron-3CDS	ENST00000474177	ENST00000283243		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
intron-3CDS	ENST00000474177	ENST00000392771		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
intron-intron	ENST00000474177	ENST00000460710		TCGA	LD	SKCM	TCGA-ER-A197-06A	PLD5	chr1	242687390	-	PLA2R1	chr2	160806287	-
Frame-shit	ENST00000224167	ENST00000330579		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000224167	ENST00000535343		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000224167	ENST00000538784		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
Frame-shit	ENST00000371625	ENST00000330579		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-intron	ENST00000371625	ENST00000535343		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5CDS-5UTR	ENST00000371625	ENST00000538784		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
intron-3CDS	ENST00000460340	ENST00000330579		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
intron-intron	ENST00000460340	ENST00000535343		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
intron-5UTR	ENST00000460340	ENST00000538784		TCGA	LD	SKCM	TCGA-ER-A197-06A	PTGDS	chr9	139872144	+	NOC4L	chr12	132635526	+
5UTR-3CDS	ENST00000250559	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000250559	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000250559	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000250559	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000250559	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000393436	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000393436	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000393436	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000393436	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000393436	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000341355	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000341355	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000341355	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000341355	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000341355	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000537460	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000537460	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000537460	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000537460	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000537460	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
intron-3CDS	ENST00000463493	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
intron-3CDS	ENST00000463493	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
intron-3CDS	ENST00000463493	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
intron-3CDS	ENST00000463493	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
intron-3CDS	ENST00000463493	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000450214	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000450214	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000450214	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000450214	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000450214	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543393	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543393	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543393	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543393	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543393	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000378985	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000378985	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000378985	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000378985	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000378985	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000540209	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000540209	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000540209	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000540209	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000540209	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000539091	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000539091	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000539091	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000539091	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000539091	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000542145	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000542145	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000542145	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000542145	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000542145	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543697	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543697	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543697	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543697	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000543697	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000541216	ENST00000567134		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000541216	ENST00000308588		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000541216	ENST00000564644		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000541216	ENST00000371091		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
5UTR-3CDS	ENST00000541216	ENST00000564675		TCGA	LD	SKCM	TCGA-ER-A197-06A	RAP1B	chr12	69004823	+	SNUPN	chr15	75897568	-
Frame-shit	ENST00000337137	ENST00000541742		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000337137	ENST00000490107		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000337137	ENST00000388985		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000337137	ENST00000366517		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000337137	ENST00000403792		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5UTR-3CDS	ENST00000380995	ENST00000541742		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5UTR-3CDS	ENST00000380995	ENST00000490107		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5UTR-3CDS	ENST00000380995	ENST00000388985		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5UTR-intron	ENST00000380995	ENST00000366517		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5UTR-intron	ENST00000380995	ENST00000403792		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000407381	ENST00000541742		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000407381	ENST00000490107		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000407381	ENST00000388985		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000407381	ENST00000366517		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000407381	ENST00000403792		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000355704	ENST00000541742		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000355704	ENST00000490107		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
Frame-shit	ENST00000355704	ENST00000388985		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000355704	ENST00000366517		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
5CDS-intron	ENST00000355704	ENST00000403792		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000472791	ENST00000541742		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000472791	ENST00000490107		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000472791	ENST00000388985		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-intron	ENST00000472791	ENST00000366517		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-intron	ENST00000472791	ENST00000403792		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000406733	ENST00000541742		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000406733	ENST00000490107		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000406733	ENST00000388985		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-intron	ENST00000406733	ENST00000366517		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-intron	ENST00000406733	ENST00000403792		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D22A	chr22	47158745	+	SMYD3	chr1	246498776	-
intron-3CDS	ENST00000300584	ENST00000541515		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D2B	chr15	78290529	-	LUC7L2	chr7	139083345	+
intron-3CDS	ENST00000409931	ENST00000541515		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D2B	chr15	78290529	-	LUC7L2	chr7	139083345	+
intron-3CDS	ENST00000492078	ENST00000541515		TCGA	LD	SKCM	TCGA-ER-A197-06A	TBC1D2B	chr15	78290529	-	LUC7L2	chr7	139083345	+
intron-3CDS	ENST00000445791	ENST00000361719		TCGA	LD	SKCM	TCGA-ER-A197-06A	TEX41	chr2	145929698	+	GRM1	chr6	146348784	+
intron-3CDS	ENST00000445791	ENST00000392299		TCGA	LD	SKCM	TCGA-ER-A197-06A	TEX41	chr2	145929698	+	GRM1	chr6	146348784	+
intron-intron	ENST00000445791	ENST00000492807		TCGA	LD	SKCM	TCGA-ER-A197-06A	TEX41	chr2	145929698	+	GRM1	chr6	146348784	+
intron-intron	ENST00000445791	ENST00000355289		TCGA	LD	SKCM	TCGA-ER-A197-06A	TEX41	chr2	145929698	+	GRM1	chr6	146348784	+
intron-intron	ENST00000445791	ENST00000282753		TCGA	LD	SKCM	TCGA-ER-A197-06A	TEX41	chr2	145929698	+	GRM1	chr6	146348784	+
intron-intron	ENST00000445791	ENST00000507907		TCGA	LD	SKCM	TCGA-ER-A197-06A	TEX41	chr2	145929698	+	GRM1	chr6	146348784	+
5UTR-5UTR	ENST00000355834	ENST00000338244		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000355834	ENST00000379333		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000355834	ENST00000424750		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000355834	ENST00000468355		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000538529	ENST00000338244		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000538529	ENST00000379333		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000538529	ENST00000424750		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000538529	ENST00000468355		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000337872	ENST00000338244		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000337872	ENST00000379333		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000337872	ENST00000424750		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
5UTR-5UTR	ENST00000337872	ENST00000468355		TCGA	LD	SKCM	TCGA-ER-A197-06A	ZBTB49	chr4	4292079	+	SLC23A2	chr20	4951561	-
Frame-shit	ENST00000253861	ENST00000389413		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000253861	ENST00000409483		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000253861	ENST00000389416		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000253861	ENST00000389418		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000253861	ENST00000404321		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000539845	ENST00000389413		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000539845	ENST00000409483		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000539845	ENST00000389416		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000539845	ENST00000389418		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000539845	ENST00000404321		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000393161	ENST00000389413		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000393161	ENST00000409483		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000393161	ENST00000389416		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000393161	ENST00000389418		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000393161	ENST00000404321		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000545148	ENST00000389413		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000545148	ENST00000409483		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000545148	ENST00000389416		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000545148	ENST00000389418		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000545148	ENST00000404321		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000460346	ENST00000389413		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-3CDS	ENST00000460346	ENST00000409483		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000460346	ENST00000389416		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000460346	ENST00000389418		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
intron-intron	ENST00000460346	ENST00000404321		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000541309	ENST00000389413		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
Frame-shit	ENST00000541309	ENST00000409483		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000541309	ENST00000389416		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000541309	ENST00000389418		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
5CDS-intron	ENST00000541309	ENST00000404321		TCGA	LD	SKCM	TCGA-ER-A19E-06A	EXOC4	chr7	133692588	+	PTPRN2	chr7	158282477	-
In-frame	ENST00000608836	ENST00000442713		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
In-frame	ENST00000608836	ENST00000269445		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
5CDS-intron	ENST00000608836	ENST00000584977		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
5CDS-intron	ENST00000608836	ENST00000578396		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
In-frame	ENST00000409774	ENST00000442713		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
In-frame	ENST00000409774	ENST00000269445		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
5CDS-intron	ENST00000409774	ENST00000584977		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
5CDS-intron	ENST00000409774	ENST00000578396		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
Frame-shit	ENST00000281932	ENST00000442713		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
Frame-shit	ENST00000281932	ENST00000269445		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
5CDS-intron	ENST00000281932	ENST00000584977		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
5CDS-intron	ENST00000281932	ENST00000578396		TCGA	LD	SKCM	TCGA-ER-A19E-06A	GPATCH11	chr2	37315583	+	DYM	chr18	46690157	-
intron-3CDS	ENST00000545391	ENST00000377182		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
intron-intron	ENST00000545391	ENST00000460688		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
In-frame	ENST00000361171	ENST00000377182		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
5CDS-intron	ENST00000361171	ENST00000460688		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
In-frame	ENST00000436593	ENST00000377182		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
5CDS-intron	ENST00000436593	ENST00000460688		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000535766	ENST00000377182		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
intron-intron	ENST00000535766	ENST00000460688		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
intron-3CDS	ENST00000485886	ENST00000377182		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
intron-intron	ENST00000485886	ENST00000460688		TCGA	LD	SKCM	TCGA-ER-A19E-06A	MVB12B	chr9	129184227	+	MAMDC2	chr9	72833253	+
intron-5UTR	ENST00000259605	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
intron-5UTR	ENST00000353739	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
intron-5UTR	ENST00000357058	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
intron-5UTR	ENST00000350199	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
intron-5UTR	ENST00000377885	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
intron-5UTR	ENST00000377877	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
intron-5UTR	ENST00000491349	ENST00000334269		TCGA	LD	SKCM	TCGA-ER-A19E-06A	RNF38	chr9	36424610	-	LCE5A	chr1	152483990	+
In-frame	ENST00000376387	ENST00000299767		TCGA	LD	SKCM	TCGA-ER-A19E-06A	TM9SF2	chr13	100172383	+	HSP90B1	chr12	104332118	+
3UTR-3CDS	ENST00000463709	ENST00000299767		TCGA	LD	SKCM	TCGA-ER-A19E-06A	TM9SF2	chr13	100172383	+	HSP90B1	chr12	104332118	+
intron-3CDS	ENST00000495707	ENST00000223023		TCGA	LD	SKCM	TCGA-ER-A19E-06A	XRCC2	chr7	152373126	-	WASL	chr7	123332432	-
Frame-shit	ENST00000359321	ENST00000223023		TCGA	LD	SKCM	TCGA-ER-A19E-06A	XRCC2	chr7	152373126	-	WASL	chr7	123332432	-
3UTR-3CDS	ENST00000463899	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
3UTR-intron	ENST00000463899	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
Frame-shit	ENST00000367555	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
5CDS-intron	ENST00000367555	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
Frame-shit	ENST00000367554	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
5CDS-intron	ENST00000367554	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
Frame-shit	ENST00000367553	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
5CDS-intron	ENST00000367553	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
intron-3CDS	ENST00000367550	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
intron-intron	ENST00000367550	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
Frame-shit	ENST00000258317	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
5CDS-intron	ENST00000258317	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
Frame-shit	ENST00000367552	ENST00000258341		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
5CDS-intron	ENST00000367552	ENST00000466964		TCGA	LD	SKCM	TCGA-ER-A19F-06A	NPL	chr1	182785941	+	LAMC1	chr1	183079623	+
3UTR-3CDS	ENST00000486890	ENST00000375155		TCGA	LD	SKCM	TCGA-ER-A19G-06A	MINOS1	chr1	19923603	+	PQLC2	chr1	19651127	+
3UTR-3CDS	ENST00000486890	ENST00000375153		TCGA	LD	SKCM	TCGA-ER-A19G-06A	MINOS1	chr1	19923603	+	PQLC2	chr1	19651127	+
3UTR-5UTR	ENST00000486890	ENST00000400548		TCGA	LD	SKCM	TCGA-ER-A19G-06A	MINOS1	chr1	19923603	+	PQLC2	chr1	19651127	+
Frame-shit	ENST00000322753	ENST00000375155		TCGA	LD	SKCM	TCGA-ER-A19G-06A	MINOS1	chr1	19923603	+	PQLC2	chr1	19651127	+
Frame-shit	ENST00000322753	ENST00000375153		TCGA	LD	SKCM	TCGA-ER-A19G-06A	MINOS1	chr1	19923603	+	PQLC2	chr1	19651127	+
5CDS-5UTR	ENST00000322753	ENST00000400548		TCGA	LD	SKCM	TCGA-ER-A19G-06A	MINOS1	chr1	19923603	+	PQLC2	chr1	19651127	+
In-frame	ENST00000298925	ENST00000525141		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000298925	ENST00000298966		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000298925	ENST00000527149		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
In-frame	ENST00000357134	ENST00000525141		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000357134	ENST00000298966		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000357134	ENST00000527149		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
In-frame	ENST00000325319	ENST00000525141		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000325319	ENST00000298966		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000325319	ENST00000527149		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
In-frame	ENST00000532434	ENST00000525141		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000532434	ENST00000298966		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000532434	ENST00000527149		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
intron-3CDS	ENST00000529218	ENST00000525141		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
intron-5UTR	ENST00000529218	ENST00000298966		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
intron-5UTR	ENST00000529218	ENST00000527149		TCGA	LD	SKCM	TCGA-ER-A19H-06A	NELL1	chr11	20907086	+	SMCO4	chr11	93232514	-
Frame-shit	ENST00000591462	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000591462	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000591462	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000591462	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000591462	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000252455	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000252455	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000252455	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000252455	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000252455	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000412601	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000412601	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000412601	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000412601	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000412601	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000592741	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000592741	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000592741	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000592741	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000592741	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000587327	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000587327	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000587327	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000587327	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000587327	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000589838	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000589838	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000589838	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000589838	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000589838	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000591510	ENST00000269919		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000591510	ENST00000604499		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000591510	ENST00000595066		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000591510	ENST00000252813		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000591510	ENST00000597431		TCGA	LD	SKCM	TCGA-ER-A19H-06A	PRKCSH	chr19	11556288	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000282908	ENST00000262460		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
Frame-shit	ENST00000282908	ENST00000429262		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5CDS-3UTR	ENST00000282908	ENST00000484893		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5UTR-3CDS	ENST00000512636	ENST00000262460		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5UTR-3CDS	ENST00000512636	ENST00000429262		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5UTR-3UTR	ENST00000512636	ENST00000484893		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5UTR-3CDS	ENST00000510398	ENST00000262460		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5UTR-3CDS	ENST00000510398	ENST00000429262		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
5UTR-3UTR	ENST00000510398	ENST00000484893		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
intron-3CDS	ENST00000508728	ENST00000262460		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
intron-3CDS	ENST00000508728	ENST00000429262		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
intron-3UTR	ENST00000508728	ENST00000484893		TCGA	LD	SKCM	TCGA-ER-A19H-06A	STK32B	chr4	5141687	+	GINS1	chr20	25397740	+
Frame-shit	ENST00000256935	ENST00000303127		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
Frame-shit	ENST00000256935	ENST00000515209		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
5CDS-intron	ENST00000256935	ENST00000506310		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
5UTR-3CDS	ENST00000540750	ENST00000303127		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
5UTR-3CDS	ENST00000540750	ENST00000515209		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
5UTR-intron	ENST00000540750	ENST00000506310		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
Frame-shit	ENST00000520908	ENST00000303127		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
Frame-shit	ENST00000520908	ENST00000515209		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
5CDS-intron	ENST00000520908	ENST00000506310		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
3UTR-3CDS	ENST00000523351	ENST00000303127		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
3UTR-3CDS	ENST00000523351	ENST00000515209		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
3UTR-intron	ENST00000523351	ENST00000506310		TCGA	LD	SKCM	TCGA-ER-A19J-06A	DOCK2	chr5	169267856	+	LMAN2	chr5	176761404	-
Frame-shit	ENST00000341165	ENST00000261584		TCGA	LD	SKCM	TCGA-ER-A19K-01A	NBR1	chr17	41349123	+	PALB2	chr16	23625412	-
Frame-shit	ENST00000422280	ENST00000261584		TCGA	LD	SKCM	TCGA-ER-A19K-01A	NBR1	chr17	41349123	+	PALB2	chr16	23625412	-
Frame-shit	ENST00000542611	ENST00000261584		TCGA	LD	SKCM	TCGA-ER-A19K-01A	NBR1	chr17	41349123	+	PALB2	chr16	23625412	-
Frame-shit	ENST00000590996	ENST00000261584		TCGA	LD	SKCM	TCGA-ER-A19K-01A	NBR1	chr17	41349123	+	PALB2	chr16	23625412	-
Frame-shit	ENST00000389312	ENST00000261584		TCGA	LD	SKCM	TCGA-ER-A19K-01A	NBR1	chr17	41349123	+	PALB2	chr16	23625412	-
Frame-shit	ENST00000589872	ENST00000261584		TCGA	LD	SKCM	TCGA-ER-A19K-01A	NBR1	chr17	41349123	+	PALB2	chr16	23625412	-
intron-intron	ENST00000282018	ENST00000490577		TCGA	LD	SKCM	TCGA-ER-A19L-06A	CYSLTR2	chr13	49270762	+	DLEU1	chr13	50678840	+
intron-intron	ENST00000282018	ENST00000378180		TCGA	LD	SKCM	TCGA-ER-A19L-06A	CYSLTR2	chr13	49270762	+	DLEU1	chr13	50678840	+
intron-3CDS	ENST00000394752	ENST00000295874		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000394752	ENST00000474889		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000394752	ENST00000495879		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000394750	ENST00000295874		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000394750	ENST00000474889		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000394750	ENST00000495879		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000358080	ENST00000295874		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000358080	ENST00000474889		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000358080	ENST00000495879		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000296295	ENST00000295874		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000296295	ENST00000474889		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000296295	ENST00000495879		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000470575	ENST00000295874		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-3CDS	ENST00000470575	ENST00000474889		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
intron-intron	ENST00000470575	ENST00000495879		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SFMBT1	chr3	53080476	-	PTPRG	chr3	61975299	+
In-frame	ENST00000442725	ENST00000586305		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000442725	ENST00000293062		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000442725	ENST00000587753		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000442725	ENST00000433821		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000442725	ENST00000454404		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000442725	ENST00000426920		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000442725	ENST00000587738		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000586305		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000293062		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000587753		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000433821		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000454404		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000426920		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
In-frame	ENST00000252595	ENST00000587738		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000586305		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000293062		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000587753		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000433821		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000454404		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000426920		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5UTR-3CDS	ENST00000598424	ENST00000587738		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000586305		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000293062		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000587753		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000433821		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000454404		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000426920		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
intron-3CDS	ENST00000598848	ENST00000587738		TCGA	LD	SKCM	TCGA-ER-A19M-06A	SLC27A1	chr19	17581516	+	RASGRP4	chr19	38910902	-
5CDS-5UTR	ENST00000221855	ENST00000595013		TCGA	LD	SKCM	TCGA-ER-A19M-06A	TBCB	chr19	36606576	+	SCGB1B2P	chr19	35068361	-
3UTR-5UTR	ENST00000392178	ENST00000595013		TCGA	LD	SKCM	TCGA-ER-A19M-06A	TBCB	chr19	36606576	+	SCGB1B2P	chr19	35068361	-
5CDS-5UTR	ENST00000589996	ENST00000595013		TCGA	LD	SKCM	TCGA-ER-A19M-06A	TBCB	chr19	36606576	+	SCGB1B2P	chr19	35068361	-
intron-5UTR	ENST00000585746	ENST00000595013		TCGA	LD	SKCM	TCGA-ER-A19M-06A	TBCB	chr19	36606576	+	SCGB1B2P	chr19	35068361	-
intron-5UTR	ENST00000586868	ENST00000595013		TCGA	LD	SKCM	TCGA-ER-A19M-06A	TBCB	chr19	36606576	+	SCGB1B2P	chr19	35068361	-
intron-3CDS	ENST00000390548	ENST00000353801		TCGA	LD	SKCM	TCGA-ER-A19N-06A	IGHG1	chr14	106207972	-	HSP90AB1	chr6	44220948	+
intron-3CDS	ENST00000390548	ENST00000371646		TCGA	LD	SKCM	TCGA-ER-A19N-06A	IGHG1	chr14	106207972	-	HSP90AB1	chr6	44220948	+
intron-3CDS	ENST00000390548	ENST00000371554		TCGA	LD	SKCM	TCGA-ER-A19N-06A	IGHG1	chr14	106207972	-	HSP90AB1	chr6	44220948	+
5CDS-intron	ENST00000585916	ENST00000425639		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
5CDS-intron	ENST00000585916	ENST00000400404		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
5UTR-intron	ENST00000545673	ENST00000425639		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
5UTR-intron	ENST00000545673	ENST00000400404		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
5CDS-intron	ENST00000324794	ENST00000425639		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
5CDS-intron	ENST00000324794	ENST00000400404		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
intron-intron	ENST00000590944	ENST00000425639		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
intron-intron	ENST00000590944	ENST00000400404		TCGA	LD	SKCM	TCGA-ER-A19O-06A	PIAS2	chr18	44497285	-	SKOR2	chr18	44738522	-
Frame-shit	ENST00000447540	ENST00000262133		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000447540	ENST00000379935		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000447540	ENST00000544545		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
Frame-shit	ENST00000566029	ENST00000262133		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000566029	ENST00000379935		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000566029	ENST00000544545		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
Frame-shit	ENST00000564845	ENST00000262133		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000564845	ENST00000379935		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000564845	ENST00000544545		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
Frame-shit	ENST00000398510	ENST00000262133		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000398510	ENST00000379935		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5CDS-intron	ENST00000398510	ENST00000544545		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
intron-3CDS	ENST00000564582	ENST00000262133		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
intron-intron	ENST00000564582	ENST00000379935		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
intron-intron	ENST00000564582	ENST00000544545		TCGA	LD	SKCM	TCGA-ER-A19S-06A	CHD9	chr16	53331070	+	RBL2	chr16	53472928	+
5UTR-3CDS	ENST00000064778	ENST00000361756		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000064778	ENST00000533380		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000064778	ENST00000393713		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-3UTR	ENST00000064778	ENST00000490867		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000064778	ENST00000545854		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000064778	ENST00000530137		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-3CDS	ENST00000450446	ENST00000361756		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000450446	ENST00000533380		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000450446	ENST00000393713		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-3UTR	ENST00000450446	ENST00000490867		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000450446	ENST00000545854		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000450446	ENST00000530137		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-3CDS	ENST00000356467	ENST00000361756		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000356467	ENST00000533380		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000356467	ENST00000393713		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-3UTR	ENST00000356467	ENST00000490867		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000356467	ENST00000545854		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
5UTR-intron	ENST00000356467	ENST00000530137		TCGA	LD	SKCM	TCGA-ER-A19T-01A	FAM168A	chr11	73308968	-	RNF121	chr11	71668273	+
intron-3CDS	ENST00000408388	ENST00000294309		TCGA	LD	SKCM	TCGA-ER-A19T-01A	PVT1	chr8	128806980	+	TPCN2	chr11	68830352	+
intron-3CDS	ENST00000408388	ENST00000542467		TCGA	LD	SKCM	TCGA-ER-A19T-01A	PVT1	chr8	128806980	+	TPCN2	chr11	68830352	+
intron-3UTR	ENST00000408388	ENST00000442692		TCGA	LD	SKCM	TCGA-ER-A19T-01A	PVT1	chr8	128806980	+	TPCN2	chr11	68830352	+
5CDS-intron	ENST00000310653	ENST00000220676		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RAB6A	chr11	73471611	-	RP1	chr8	55769588	+
5CDS-intron	ENST00000336083	ENST00000220676		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RAB6A	chr11	73471611	-	RP1	chr8	55769588	+
intron-intron	ENST00000536566	ENST00000220676		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RAB6A	chr11	73471611	-	RP1	chr8	55769588	+
5CDS-intron	ENST00000541588	ENST00000220676		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RAB6A	chr11	73471611	-	RP1	chr8	55769588	+
Frame-shit	ENST00000361756	ENST00000356297		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
Frame-shit	ENST00000361756	ENST00000543296		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000533380	ENST00000356297		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000533380	ENST00000543296		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000393713	ENST00000356297		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000393713	ENST00000543296		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
3UTR-3CDS	ENST00000490867	ENST00000356297		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
3UTR-3CDS	ENST00000490867	ENST00000543296		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000545854	ENST00000356297		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000545854	ENST00000543296		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000530137	ENST00000356297		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000530137	ENST00000543296		TCGA	LD	SKCM	TCGA-ER-A19T-01A	RNF121	chr11	71668310	+	PXDNL	chr8	52339318	-
intron-3CDS	ENST00000550067	ENST00000547776		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-3CDS	ENST00000550067	ENST00000329257		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000547010		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000341752		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000549558		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000550693		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000549025		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000549493		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000547446		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000333732		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000546568		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000332712		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000546960		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
intron-intron	ENST00000550067	ENST00000550833		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-3CDS	ENST00000360820	ENST00000547776		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-3CDS	ENST00000360820	ENST00000329257		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000547010		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000341752		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000549558		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000550693		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000549025		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000549493		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000547446		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000333732		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000546568		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000332712		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000546960		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5UTR-intron	ENST00000360820	ENST00000550833		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SCYL2	chr12	100661570	+	ANKS1B	chr12	100219167	-
5CDS-5UTR	ENST00000263980	ENST00000430629		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
5CDS-5UTR	ENST00000263980	ENST00000536657		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
intron-5UTR	ENST00000490329	ENST00000430629		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
intron-5UTR	ENST00000490329	ENST00000536657		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
5UTR-5UTR	ENST00000545949	ENST00000430629		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
5UTR-5UTR	ENST00000545949	ENST00000536657		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
5CDS-5UTR	ENST00000374086	ENST00000430629		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
5CDS-5UTR	ENST00000374086	ENST00000536657		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SLC9A1	chr1	27480474	-	WASF2	chr1	27755443	-
Frame-shit	ENST00000327367	ENST00000294304		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
5CDS-intron	ENST00000327367	ENST00000529481		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-3CDS	ENST00000559092	ENST00000294304		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-intron	ENST00000559092	ENST00000529481		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-3CDS	ENST00000540846	ENST00000294304		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-intron	ENST00000540846	ENST00000529481		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-3CDS	ENST00000439724	ENST00000294304		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-intron	ENST00000439724	ENST00000529481		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-3CDS	ENST00000537194	ENST00000294304		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
intron-intron	ENST00000537194	ENST00000529481		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SMAD3	chr15	67358698	+	LRP5	chr11	68115315	+
5CDS-5UTR	ENST00000261854	ENST00000278550		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SPPL2A	chr15	51012137	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000261854	ENST00000533038		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SPPL2A	chr15	51012137	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000559293	ENST00000278550		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SPPL2A	chr15	51012137	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000559293	ENST00000533038		TCGA	LD	SKCM	TCGA-ER-A19T-01A	SPPL2A	chr15	51012137	-	TENM4	chr11	78781054	-
5UTR-3CDS	ENST00000533050	ENST00000263579		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
5UTR-3CDS	ENST00000533050	ENST00000530860		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
3UTR-3CDS	ENST00000525728	ENST00000263579		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
3UTR-3CDS	ENST00000525728	ENST00000530860		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
5UTR-3CDS	ENST00000529731	ENST00000263579		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
5UTR-3CDS	ENST00000529731	ENST00000530860		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
5UTR-3CDS	ENST00000360194	ENST00000263579		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
5UTR-3CDS	ENST00000360194	ENST00000530860		TCGA	LD	SKCM	TCGA-ER-A19W-06A	FAM118B	chr11	126081725	+	DCPS	chr11	126201300	+
intron-intron	ENST00000282488	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000282488	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000282488	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000282488	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-5UTR	ENST00000282488	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000282486	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000282486	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000282486	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000282486	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000282486	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000355460	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000355460	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000355460	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000355460	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000355460	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000493459	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000493459	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000493459	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000493459	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000493459	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324210	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324210	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324210	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324210	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000324210	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000498502	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000498502	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000498502	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000498502	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000498502	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000545754	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000545754	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000545754	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000545754	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-5UTR	ENST00000545754	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000357472	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000357472	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000357472	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000357472	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000357472	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324196	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324196	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324196	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000324196	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000324196	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000485910	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000485910	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000485910	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000485910	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-5UTR	ENST00000485910	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000463374	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000463374	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000463374	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000463374	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000463374	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000492948	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000492948	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000492948	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000492948	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000492948	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000485509	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000485509	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000485509	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000485509	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000485509	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000461436	ENST00000239944		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000461436	ENST00000479209		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000461436	ENST00000487153		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-intron	ENST00000461436	ENST00000491660		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
intron-5UTR	ENST00000461436	ENST00000490945		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MBNL1	chr3	152150709	+	SERP1	chr3	150284893	-
In-frame	ENST00000399231	ENST00000397795		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000399231	ENST00000256552		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000399231	ENST00000542188		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
5CDS-intron	ENST00000399231	ENST00000559179		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000356338	ENST00000397795		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000356338	ENST00000256552		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000356338	ENST00000542188		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
5CDS-intron	ENST00000356338	ENST00000559179		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000358212	ENST00000397795		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000358212	ENST00000256552		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000358212	ENST00000542188		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
5CDS-intron	ENST00000358212	ENST00000559179		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000399233	ENST00000397795		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000399233	ENST00000256552		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000399233	ENST00000542188		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
5CDS-intron	ENST00000399233	ENST00000559179		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000553916	ENST00000397795		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000553916	ENST00000256552		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
In-frame	ENST00000553916	ENST00000542188		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
5CDS-intron	ENST00000553916	ENST00000559179		TCGA	LD	SKCM	TCGA-ER-A19W-06A	MYO5A	chr15	52697484	-	TRPM1	chr15	31334446	-
5CDS-5UTR	ENST00000421999	ENST00000383693		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	CMSS1	chr3	99536887	+	LNP1	chr3	100148541	+
5CDS-5UTR	ENST00000421999	ENST00000489752		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	CMSS1	chr3	99536887	+	LNP1	chr3	100148541	+
3UTR-5UTR	ENST00000496116	ENST00000383693		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	CMSS1	chr3	99536887	+	LNP1	chr3	100148541	+
3UTR-5UTR	ENST00000496116	ENST00000489752		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	CMSS1	chr3	99536887	+	LNP1	chr3	100148541	+
intron-5UTR	ENST00000489081	ENST00000383693		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	CMSS1	chr3	99536887	+	LNP1	chr3	100148541	+
intron-5UTR	ENST00000489081	ENST00000489752		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	CMSS1	chr3	99536887	+	LNP1	chr3	100148541	+
Frame-shit	ENST00000446165	ENST00000311117		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000446165	ENST00000334914		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000446165	ENST00000257745		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000446165	ENST00000334877		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000446165	ENST00000476671		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-intron	ENST00000446165	ENST00000480368		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
Frame-shit	ENST00000343325	ENST00000311117		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000343325	ENST00000334914		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000343325	ENST00000257745		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000343325	ENST00000334877		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000343325	ENST00000476671		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-intron	ENST00000343325	ENST00000480368		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-3CDS	ENST00000458122	ENST00000311117		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000458122	ENST00000334914		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000458122	ENST00000257745		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000458122	ENST00000334877		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000458122	ENST00000476671		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-intron	ENST00000458122	ENST00000480368		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-3CDS	ENST00000540038	ENST00000311117		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000540038	ENST00000334914		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000540038	ENST00000257745		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000540038	ENST00000334877		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-5UTR	ENST00000540038	ENST00000476671		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5UTR-intron	ENST00000540038	ENST00000480368		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
3UTR-3CDS	ENST00000498389	ENST00000311117		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
3UTR-5UTR	ENST00000498389	ENST00000334914		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
3UTR-5UTR	ENST00000498389	ENST00000257745		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
3UTR-5UTR	ENST00000498389	ENST00000334877		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
3UTR-5UTR	ENST00000498389	ENST00000476671		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
3UTR-intron	ENST00000498389	ENST00000480368		TCGA	LD	SKCM	TCGA-ER-A1A1-06A	ZNF791	chr19	12721896	+	KMT2E	chr7	104714066	+
5CDS-5UTR	ENST00000430702	ENST00000312349		TCGA	LD	SKCM	TCGA-ER-A2NC-06A	ADAM19	chr5	156919981	-	FNDC9	chr5	156770551	-
5CDS-5UTR	ENST00000394020	ENST00000312349		TCGA	LD	SKCM	TCGA-ER-A2NC-06A	ADAM19	chr5	156919981	-	FNDC9	chr5	156770551	-
5CDS-5UTR	ENST00000257527	ENST00000312349		TCGA	LD	SKCM	TCGA-ER-A2NC-06A	ADAM19	chr5	156919981	-	FNDC9	chr5	156770551	-
5CDS-5UTR	ENST00000517905	ENST00000312349		TCGA	LD	SKCM	TCGA-ER-A2NC-06A	ADAM19	chr5	156919981	-	FNDC9	chr5	156770551	-
intron-3CDS	ENST00000397063	ENST00000370794		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000397063	ENST00000357428		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000397063	ENST00000370793		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000397063	ENST00000370792		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000397063	ENST00000528150		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000397062	ENST00000370794		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000397062	ENST00000357428		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000397062	ENST00000370793		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000397062	ENST00000370792		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000397062	ENST00000528150		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000446151	ENST00000370794		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000446151	ENST00000357428		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000446151	ENST00000370793		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000446151	ENST00000370792		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000446151	ENST00000528150		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
5UTR-3CDS	ENST00000464747	ENST00000370794		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
5UTR-3CDS	ENST00000464747	ENST00000357428		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
5UTR-3CDS	ENST00000464747	ENST00000370793		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
5UTR-intron	ENST00000464747	ENST00000370792		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
5UTR-intron	ENST00000464747	ENST00000528150		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000423513	ENST00000370794		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000423513	ENST00000357428		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000423513	ENST00000370793		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000423513	ENST00000370792		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-intron	ENST00000423513	ENST00000528150		TCGA	LD	SKCM	TCGA-ER-A2ND-06A	NFE2L2	chr2	178199121	-	USP33	chr1	78167156	-
intron-3CDS	ENST00000472863	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000472863	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000472863	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000472863	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000498678	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000498678	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000498678	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000498678	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000460160	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000460160	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000460160	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000460160	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000476342	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000476342	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000476342	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000476342	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000552000	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000552000	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000552000	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
5UTR-3CDS	ENST00000552000	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000470495	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000470495	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000470495	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000470495	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000311626	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000311626	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000311626	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000311626	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490677	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490677	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490677	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000490677	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000485909	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000485909	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000485909	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000485909	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000489475	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000489475	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000489475	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000489475	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000465120	ENST00000273854		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000465120	ENST00000432638		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000465120	ENST00000354839		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
intron-3CDS	ENST00000465120	ENST00000511294		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	HOXB3	chr17	46681842	-	EPHA5	chr4	66509145	-
In-frame	ENST00000225728	ENST00000395667		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000225728	ENST00000395665		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000225728	ENST00000308799		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000225728	ENST00000301938		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5CDS-intron	ENST00000225728	ENST00000573605		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000575197	ENST00000395667		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000575197	ENST00000395665		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000575197	ENST00000308799		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
In-frame	ENST00000575197	ENST00000301938		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5CDS-intron	ENST00000575197	ENST00000573605		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5UTR-3CDS	ENST00000574128	ENST00000395667		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5UTR-3CDS	ENST00000574128	ENST00000395665		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5UTR-3CDS	ENST00000574128	ENST00000308799		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5UTR-3CDS	ENST00000574128	ENST00000301938		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
5UTR-intron	ENST00000574128	ENST00000573605		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	MED31	chr17	6553676	-	FBXW10	chr17	18651254	+
Frame-shit	ENST00000250101	ENST00000007699		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
5CDS-5UTR	ENST00000250101	ENST00000570627		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
intron-3CDS	ENST00000570330	ENST00000007699		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
intron-5UTR	ENST00000570330	ENST00000570627		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
Frame-shit	ENST00000574838	ENST00000007699		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
5CDS-5UTR	ENST00000574838	ENST00000570627		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
intron-3CDS	ENST00000577146	ENST00000007699		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
intron-5UTR	ENST00000577146	ENST00000570627		TCGA	LD	SKCM	TCGA-ER-A2NE-06A	TXNDC17	chr17	6544547	+	YBX2	chr17	7193854	-
In-frame	ENST00000378097	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378097	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000352527	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000352527	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000341524	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000341524	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000164247	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000164247	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000378083	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000378083	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378111	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378111	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378092	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378092	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000602612	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000602612	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378087	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378087	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-3CDS	ENST00000459822	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-3CDS	ENST00000459822	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000458166	ENST00000608083		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000458166	ENST00000377855		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000545482		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000361521		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000377842		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000377845		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000541130		TCGA	LD	SKCM	TCGA-ER-A2NG-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-5UTR	ENST00000310380	ENST00000599715		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000310380	ENST00000006724		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000310380	ENST00000338196		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000310380	ENST00000401731		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000310380	ENST00000602225		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000437101	ENST00000599715		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000437101	ENST00000006724		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000437101	ENST00000338196		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000437101	ENST00000401731		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000437101	ENST00000602225		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000429994	ENST00000599715		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000429994	ENST00000006724		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000429994	ENST00000338196		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000429994	ENST00000401731		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000429994	ENST00000602225		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000355729	ENST00000599715		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-5UTR	ENST00000355729	ENST00000006724		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000355729	ENST00000338196		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000355729	ENST00000401731		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
5CDS-intron	ENST00000355729	ENST00000602225		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-5UTR	ENST00000460582	ENST00000599715		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-5UTR	ENST00000460582	ENST00000006724		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-intron	ENST00000460582	ENST00000338196		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-intron	ENST00000460582	ENST00000401731		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-intron	ENST00000460582	ENST00000602225		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-5UTR	ENST00000356740	ENST00000599715		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-5UTR	ENST00000356740	ENST00000006724		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-intron	ENST00000356740	ENST00000338196		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-intron	ENST00000356740	ENST00000401731		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-intron	ENST00000356740	ENST00000602225		TCGA	LD	SKCM	TCGA-ER-A3ET-06A	XXYLT1	chr3	194877178	-	CEACAM7	chr19	42187994	-
intron-3CDS	ENST00000454341	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000454341	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-5UTR	ENST00000454341	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000284694	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000284694	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-5UTR	ENST00000284694	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
In-frame	ENST00000544758	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
In-frame	ENST00000544758	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
5CDS-5UTR	ENST00000544758	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000356858	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000356858	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-5UTR	ENST00000356858	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000480379	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000480379	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-5UTR	ENST00000480379	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000368674	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000368674	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-5UTR	ENST00000368674	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000392694	ENST00000368679		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-3CDS	ENST00000392694	ENST00000368676		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
intron-5UTR	ENST00000392694	ENST00000467145		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	C10orf90	chr10	128335134	-	ADAM12	chr10	127738238	-
5CDS-intron	ENST00000263119	ENST00000343304		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
5CDS-intron	ENST00000263119	ENST00000472710		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
5CDS-intron	ENST00000405822	ENST00000343304		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
5CDS-intron	ENST00000405822	ENST00000472710		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
5CDS-intron	ENST00000398319	ENST00000343304		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
5CDS-intron	ENST00000398319	ENST00000472710		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
intron-intron	ENST00000337989	ENST00000343304		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
intron-intron	ENST00000337989	ENST00000472710		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
intron-intron	ENST00000485008	ENST00000343304		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
intron-intron	ENST00000485008	ENST00000472710		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CABIN1	chr22	24439546	+	LRRC41	chr1	46727076	-
intron-3CDS	ENST00000328908	ENST00000373491		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CDYL	chr6	4777041	+	TBC1D22B	chr6	37249961	+
Frame-shit	ENST00000397588	ENST00000373491		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CDYL	chr6	4777041	+	TBC1D22B	chr6	37249961	+
3UTR-3CDS	ENST00000472453	ENST00000373491		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CDYL	chr6	4777041	+	TBC1D22B	chr6	37249961	+
intron-3CDS	ENST00000449732	ENST00000373491		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CDYL	chr6	4777041	+	TBC1D22B	chr6	37249961	+
intron-3CDS	ENST00000343762	ENST00000373491		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CDYL	chr6	4777041	+	TBC1D22B	chr6	37249961	+
In-frame	ENST00000377833	ENST00000293350		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000377833	ENST00000540132		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000377833	ENST00000455361		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
5CDS-intron	ENST00000377833	ENST00000433981		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000377833	ENST00000598015		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
intron-3CDS	ENST00000377823	ENST00000293350		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
intron-intron	ENST00000377823	ENST00000540132		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
intron-intron	ENST00000377823	ENST00000455361		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
intron-intron	ENST00000377823	ENST00000433981		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
intron-3UTR	ENST00000377823	ENST00000598015		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	CUBN	chr10	17024483	-	ALDH16A1	chr19	49961743	+
5CDS-3UTR	ENST00000368192	ENST00000453618		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	ETV3	chr1	157105263	-	SEC22B	chr1	145109524	-
5CDS-3UTR	ENST00000326786	ENST00000453618		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	ETV3	chr1	157105263	-	SEC22B	chr1	145109524	-
intron-3UTR	ENST00000460850	ENST00000453618		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	ETV3	chr1	157105263	-	SEC22B	chr1	145109524	-
Frame-shit	ENST00000341776	ENST00000274747		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5CDS-intron	ENST00000341776	ENST00000543597		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5CDS-intron	ENST00000341776	ENST00000535061		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000341776	ENST00000483634		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000341776	ENST00000378353		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000341776	ENST00000378386		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5CDS-3UTR	ENST00000341776	ENST00000443868		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3CDS	ENST00000397311	ENST00000274747		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-intron	ENST00000397311	ENST00000543597		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-intron	ENST00000397311	ENST00000535061		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000397311	ENST00000483634		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000397311	ENST00000378353		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000397311	ENST00000378386		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000397311	ENST00000443868		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3CDS	ENST00000541660	ENST00000274747		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-intron	ENST00000541660	ENST00000543597		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-intron	ENST00000541660	ENST00000535061		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000541660	ENST00000483634		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000541660	ENST00000378353		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000541660	ENST00000378386		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000541660	ENST00000443868		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3CDS	ENST00000474854	ENST00000274747		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-intron	ENST00000474854	ENST00000543597		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-intron	ENST00000474854	ENST00000535061		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000474854	ENST00000483634		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000474854	ENST00000378353		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000474854	ENST00000378386		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
intron-3UTR	ENST00000474854	ENST00000443868		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	JARID2	chr6	15246815	+	MRS2	chr6	24405396	+
5UTR-3CDS	ENST00000220597	ENST00000373867		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-3CDS	ENST00000220597	ENST00000373868		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-3CDS	ENST00000220597	ENST00000442566		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-3CDS	ENST00000220597	ENST00000277705		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-3CDS	ENST00000220597	ENST00000419214		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-3CDS	ENST00000220597	ENST00000468840		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-intron	ENST00000220597	ENST00000435852		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-intron	ENST00000220597	ENST00000422313		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5UTR-intron	ENST00000220597	ENST00000510215		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-3CDS	ENST00000523463	ENST00000373867		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-3CDS	ENST00000523463	ENST00000373868		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-3CDS	ENST00000523463	ENST00000442566		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-3CDS	ENST00000523463	ENST00000277705		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-3CDS	ENST00000523463	ENST00000419214		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-3CDS	ENST00000523463	ENST00000468840		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-intron	ENST00000523463	ENST00000435852		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-intron	ENST00000523463	ENST00000422313		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
intron-intron	ENST00000523463	ENST00000510215		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PAG1	chr8	81982347	-	FAM13C	chr10	61007497	-
5CDS-3UTR	ENST00000324862	ENST00000438568		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000324862	ENST00000369054		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000324862	ENST00000369064		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000324862	ENST00000606933		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000324862	ENST00000463555		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000543398	ENST00000438568		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000543398	ENST00000369054		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000543398	ENST00000369064		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000543398	ENST00000606933		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000543398	ENST00000463555		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-3UTR	ENST00000414970	ENST00000438568		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000414970	ENST00000369054		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000414970	ENST00000369064		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000414970	ENST00000606933		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
5CDS-intron	ENST00000414970	ENST00000463555		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
3UTR-3UTR	ENST00000467329	ENST00000438568		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
3UTR-intron	ENST00000467329	ENST00000369054		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
3UTR-intron	ENST00000467329	ENST00000369064		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
3UTR-intron	ENST00000467329	ENST00000606933		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
3UTR-intron	ENST00000467329	ENST00000463555		TCGA	LD	SKCM	TCGA-ER-A3EV-06A	PRPF3	chr1	150307712	+	TARS2	chr1	150468958	+
Frame-shit	ENST00000346333	ENST00000306357		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
Frame-shit	ENST00000346333	ENST00000574431		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
5CDS-intron	ENST00000346333	ENST00000573373		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
Frame-shit	ENST00000359244	ENST00000306357		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
Frame-shit	ENST00000359244	ENST00000574431		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
5CDS-intron	ENST00000359244	ENST00000573373		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
Frame-shit	ENST00000426628	ENST00000306357		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
Frame-shit	ENST00000426628	ENST00000574431		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
5CDS-intron	ENST00000426628	ENST00000573373		TCGA	LD	SKCM	TCGA-ER-A3PL-06A	FAM86C1	chr11	71507212	+	STX8	chr17	9281970	-
intron-3CDS	ENST00000496972	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
intron-3CDS	ENST00000496972	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
intron-intron	ENST00000496972	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000405222	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000405222	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000405222	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000407661	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000407661	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000407661	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000406818	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000406818	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000406818	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000407038	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000407038	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000407038	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000404103	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000404103	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000404103	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000407186	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000407186	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000407186	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000288642	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000288642	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000288642	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000545439	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-3CDS	ENST00000545439	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
5UTR-intron	ENST00000545439	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
intron-3CDS	ENST00000472690	ENST00000260600		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
intron-3CDS	ENST00000472690	ENST00000405392		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
intron-intron	ENST00000472690	ENST00000450524		TCGA	LD	SKCM	TCGA-ER-A42L-06A	DTNB	chr2	25896255	-	ADCY3	chr2	25057805	-
Frame-shit	ENST00000373644	ENST00000373585		TCGA	LD	SKCM	TCGA-FR-A2OS-01A	TET1	chr10	70412351	+	DDX50	chr10	70670824	+
5CDS-intron	ENST00000373644	ENST00000466265		TCGA	LD	SKCM	TCGA-FR-A2OS-01A	TET1	chr10	70412351	+	DDX50	chr10	70670824	+
Frame-shit	ENST00000297814	ENST00000376395		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
Frame-shit	ENST00000297814	ENST00000257468		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
Frame-shit	ENST00000413982	ENST00000376395		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
Frame-shit	ENST00000413982	ENST00000257468		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
intron-3CDS	ENST00000334204	ENST00000376395		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
intron-3CDS	ENST00000334204	ENST00000257468		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
intron-3CDS	ENST00000376347	ENST00000376395		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
intron-3CDS	ENST00000376347	ENST00000257468		TCGA	LD	SKCM	TCGA-FR-A3YN-06A	KIF27	chr9	86485434	-	UBQLN1	chr9	86293514	-
In-frame	ENST00000534313	ENST00000317568		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000534313	ENST00000531296		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000534313	ENST00000355991		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000534313	ENST00000416776		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
In-frame	ENST00000527525	ENST00000317568		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527525	ENST00000531296		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527525	ENST00000355991		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000527525	ENST00000416776		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
In-frame	ENST00000394224	ENST00000317568		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000394224	ENST00000531296		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000394224	ENST00000355991		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000394224	ENST00000416776		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
In-frame	ENST00000394227	ENST00000317568		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000394227	ENST00000531296		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000394227	ENST00000355991		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-intron	ENST00000394227	ENST00000416776		TCGA	LD	SKCM	TCGA-FR-A3YO-06A	SIPA1	chr11	65410110	+	FRMD8	chr11	65172335	+
5CDS-5UTR	ENST00000244040	ENST00000427442		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
5CDS-intron	ENST00000244040	ENST00000418998		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
5CDS-intron	ENST00000244040	ENST00000444063		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
5CDS-intron	ENST00000244040	ENST00000373135		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
5CDS-intron	ENST00000244040	ENST00000373134		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
5CDS-intron	ENST00000244040	ENST00000457824		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
3UTR-5UTR	ENST00000488949	ENST00000427442		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
3UTR-intron	ENST00000488949	ENST00000418998		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
3UTR-intron	ENST00000488949	ENST00000444063		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
3UTR-intron	ENST00000488949	ENST00000373135		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
3UTR-intron	ENST00000488949	ENST00000373134		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
3UTR-intron	ENST00000488949	ENST00000457824		TCGA	LD	SKCM	TCGA-FR-A44A-06A	RAB22A	chr20	56886178	+	L3MBTL1	chr20	42142116	+
Frame-shit	ENST00000449592	ENST00000330079		TCGA	LD	SKCM	TCGA-FR-A44A-06A	TMEM120B	chr12	122150870	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000540377	ENST00000330079		TCGA	LD	SKCM	TCGA-FR-A44A-06A	TMEM120B	chr12	122150870	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000538055	ENST00000330079		TCGA	LD	SKCM	TCGA-FR-A44A-06A	TMEM120B	chr12	122150870	+	ORAI1	chr12	122078947	+
Frame-shit	ENST00000356462	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000356462	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000356462	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000356462	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000356462	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000356462	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000356462	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000356462	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000400345	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000400345	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000400345	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000400345	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000400345	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000400345	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000400345	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000400345	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000589054	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000589054	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000589054	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000589054	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000589054	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000589054	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000589054	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000589054	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256832	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256832	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256832	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256832	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256832	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256832	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256832	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256832	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000382850	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000382850	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000382850	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000382850	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000382850	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000382850	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000382850	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000382850	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256830	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256830	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256830	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000256830	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256830	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256830	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256830	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000256830	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000588516	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000588516	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000588516	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-3CDS	ENST00000588516	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000588516	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000588516	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000588516	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
intron-intron	ENST00000588516	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456986	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456986	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456986	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456986	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456986	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456986	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456986	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456986	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000435432	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000435432	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000435432	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000435432	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000435432	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000435432	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000435432	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000435432	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000357895	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000357895	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000357895	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000357895	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000357895	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000357895	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000357895	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000357895	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000586263	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000586263	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000586263	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000586263	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000586263	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000586263	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000586263	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000586263	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456173	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456173	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456173	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000456173	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456173	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456173	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456173	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000456173	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000431212	ENST00000405709		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000431212	ENST00000331762		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000431212	ENST00000452895		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
Frame-shit	ENST00000431212	ENST00000415362		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000431212	ENST00000447215		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000431212	ENST00000437687		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000431212	ENST00000489381		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
5CDS-intron	ENST00000431212	ENST00000450877		TCGA	LD	SKCM	TCGA-FR-A726-01A	NEDD4L	chr18	56001124	+	IMMP2L	chr7	110526751	-
In-frame	ENST00000370189	ENST00000535572		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000370189	ENST00000537687		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000370189	ENST00000315939		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000370189	ENST00000447667		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000370189	ENST00000530271		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000370189	ENST00000540360		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000370189	ENST00000340908		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000370189	ENST00000574564		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000529992	ENST00000535572		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000529992	ENST00000537687		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000529992	ENST00000315939		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000529992	ENST00000447667		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000529992	ENST00000530271		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000529992	ENST00000540360		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000529992	ENST00000340908		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000529992	ENST00000574564		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000306121	ENST00000535572		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000306121	ENST00000537687		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
In-frame	ENST00000306121	ENST00000315939		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000306121	ENST00000447667		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000306121	ENST00000530271		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000306121	ENST00000540360		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000306121	ENST00000340908		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
5CDS-intron	ENST00000306121	ENST00000574564		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-3CDS	ENST00000473868	ENST00000535572		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-3CDS	ENST00000473868	ENST00000537687		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-3CDS	ENST00000473868	ENST00000315939		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-intron	ENST00000473868	ENST00000447667		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-intron	ENST00000473868	ENST00000530271		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-intron	ENST00000473868	ENST00000540360		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-intron	ENST00000473868	ENST00000340908		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
intron-intron	ENST00000473868	ENST00000574564		TCGA	LD	SKCM	TCGA-FR-A729-06A	SNX7	chr1	99167459	+	WNK1	chr12	987378	+
Frame-shit	ENST00000534064	ENST00000299626		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
Frame-shit	ENST00000534064	ENST00000376156		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
5CDS-5UTR	ENST00000534064	ENST00000532552		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
intron-3CDS	ENST00000535943	ENST00000299626		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
intron-3CDS	ENST00000535943	ENST00000376156		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
intron-5UTR	ENST00000535943	ENST00000532552		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
5UTR-3CDS	ENST00000525931	ENST00000299626		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
5UTR-3CDS	ENST00000525931	ENST00000376156		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
5UTR-5UTR	ENST00000525931	ENST00000532552		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
Frame-shit	ENST00000529807	ENST00000299626		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
Frame-shit	ENST00000529807	ENST00000376156		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
5CDS-5UTR	ENST00000529807	ENST00000532552		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
intron-3CDS	ENST00000527522	ENST00000299626		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
intron-3CDS	ENST00000527522	ENST00000376156		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
intron-5UTR	ENST00000527522	ENST00000532552		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	INTS4	chr11	77649697	-	ALG8	chr11	77817958	-
3UTR-3CDS	ENST00000394670	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394670	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394670	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394670	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394670	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-intron	ENST00000394670	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000321233	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000321233	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000321233	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000321233	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000321233	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-intron	ENST00000321233	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394673	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394673	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394673	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394673	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000394673	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-intron	ENST00000394673	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000341711	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000341711	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000341711	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000341711	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000341711	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-intron	ENST00000341711	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000342555	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000342555	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000342555	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000342555	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-3CDS	ENST00000342555	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
3UTR-intron	ENST00000342555	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000577908	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000577908	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000577908	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000577908	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000577908	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-intron	ENST00000577908	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000584416	ENST00000543378		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000584416	ENST00000327564		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000584416	ENST00000394713		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000584416	ENST00000584368		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-3CDS	ENST00000584416	ENST00000341671		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
intron-intron	ENST00000584416	ENST00000581786		TCGA	LD	SKCM	TCGA-FR-A7U8-06A	ZNF207	chr17	30696801	+	LRRC37B	chr17	30376121	+
5CDS-3UTR	ENST00000302503	ENST00000533507		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-3UTR	ENST00000302503	ENST00000263774		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000302503	ENST00000529276		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000302503	ENST00000528192		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000302503	ENST00000534208		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000302503	ENST00000534716		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-3UTR	ENST00000542981	ENST00000533507		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-3UTR	ENST00000542981	ENST00000263774		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000542981	ENST00000529276		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000542981	ENST00000528192		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000542981	ENST00000534208		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5CDS-intron	ENST00000542981	ENST00000534716		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5UTR-3UTR	ENST00000534074	ENST00000533507		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5UTR-3UTR	ENST00000534074	ENST00000263774		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5UTR-intron	ENST00000534074	ENST00000529276		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5UTR-intron	ENST00000534074	ENST00000528192		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5UTR-intron	ENST00000534074	ENST00000534208		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
5UTR-intron	ENST00000534074	ENST00000534716		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	MTCH2	chr11	47644253	-	NDUFS3	chr11	47603640	+
In-frame	ENST00000395996	ENST00000027335		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000395996	ENST00000441892		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000395996	ENST00000450165		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000358544	ENST00000027335		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000358544	ENST00000441892		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000358544	ENST00000450165		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000357162	ENST00000027335		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000357162	ENST00000441892		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000357162	ENST00000450165		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000355155	ENST00000027335		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000355155	ENST00000441892		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000355155	ENST00000450165		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000441350	ENST00000027335		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000441350	ENST00000441892		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000441350	ENST00000450165		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
intron-3CDS	ENST00000521932	ENST00000027335		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
intron-3CDS	ENST00000521932	ENST00000441892		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
intron-3CDS	ENST00000521932	ENST00000450165		TCGA	LD	SKCM	TCGA-FR-A7U9-06A	VPS13B	chr8	100050794	+	CDH17	chr8	95189949	-
In-frame	ENST00000574590	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000574590	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
In-frame	ENST00000575318	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000575318	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
Frame-shit	ENST00000572904	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000572904	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
Frame-shit	ENST00000262419	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000262419	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
In-frame	ENST00000432791	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5CDS-5UTR	ENST00000432791	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5UTR-3CDS	ENST00000393476	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5UTR-5UTR	ENST00000393476	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
intron-3CDS	ENST00000576248	ENST00000261772		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
intron-5UTR	ENST00000576248	ENST00000564359		TCGA	LD	SKCM	TCGA-FR-A8YC-06A	KANSL1	chr17	44143903	-	AARS	chr16	70295060	-
5CDS-intron	ENST00000441493	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
5CDS-intron	ENST00000400561	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
5CDS-intron	ENST00000444520	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
intron-intron	ENST00000414725	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
intron-intron	ENST00000383094	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
intron-intron	ENST00000207726	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
intron-intron	ENST00000429452	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
intron-intron	ENST00000585038	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
intron-intron	ENST00000580469	ENST00000609084		TCGA	LD	SKCM	TCGA-FR-A8YD-06A	MICAL3	chr22	18324588	-	CRYBB2P1	chr22	25916649	+
Frame-shit	ENST00000512944	ENST00000166345		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	EXOC3	chr5	447867	+	TRIP13	chr5	894902	+
5CDS-intron	ENST00000512944	ENST00000510412		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	EXOC3	chr5	447867	+	TRIP13	chr5	894902	+
intron-3CDS	ENST00000510441	ENST00000166345		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	EXOC3	chr5	447867	+	TRIP13	chr5	894902	+
intron-intron	ENST00000510441	ENST00000510412		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	EXOC3	chr5	447867	+	TRIP13	chr5	894902	+
Frame-shit	ENST00000315013	ENST00000166345		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	EXOC3	chr5	447867	+	TRIP13	chr5	894902	+
5CDS-intron	ENST00000315013	ENST00000510412		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	EXOC3	chr5	447867	+	TRIP13	chr5	894902	+
5CDS-5UTR	ENST00000512913	ENST00000230882		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000512913	ENST00000357703		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000512913	ENST00000537449		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-intron	ENST00000512913	ENST00000513625		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000265073	ENST00000230882		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000265073	ENST00000357703		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000265073	ENST00000537449		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-intron	ENST00000265073	ENST00000513625		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000515355	ENST00000230882		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000515355	ENST00000357703		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000515355	ENST00000537449		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-intron	ENST00000515355	ENST00000513625		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000502897	ENST00000230882		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000502897	ENST00000357703		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000502897	ENST00000537449		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-intron	ENST00000502897	ENST00000513625		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
3UTR-5UTR	ENST00000504789	ENST00000230882		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
3UTR-5UTR	ENST00000504789	ENST00000357703		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
3UTR-5UTR	ENST00000504789	ENST00000537449		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
3UTR-intron	ENST00000504789	ENST00000513625		TCGA	LD	SKCM	TCGA-FR-A8YE-06A	SUB1	chr5	32591791	+	GHR	chr5	42565966	+
5CDS-5UTR	ENST00000382368	ENST00000424383		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	FBXL18	chr7	5530862	-	ELFN1	chr7	1748727	+
5CDS-intron	ENST00000382368	ENST00000561626		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	FBXL18	chr7	5530862	-	ELFN1	chr7	1748727	+
5CDS-intron	ENST00000382368	ENST00000541472		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	FBXL18	chr7	5530862	-	ELFN1	chr7	1748727	+
5CDS-5UTR	ENST00000453700	ENST00000424383		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	FBXL18	chr7	5530862	-	ELFN1	chr7	1748727	+
5CDS-intron	ENST00000453700	ENST00000561626		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	FBXL18	chr7	5530862	-	ELFN1	chr7	1748727	+
5CDS-intron	ENST00000453700	ENST00000541472		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	FBXL18	chr7	5530862	-	ELFN1	chr7	1748727	+
5UTR-5UTR	ENST00000368655	ENST00000368713		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A3	chr1	153520966	-
5UTR-5UTR	ENST00000368655	ENST00000368712		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A3	chr1	153520966	-
5UTR-5UTR	ENST00000368655	ENST00000368715		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A4	chr1	153517285	-
5UTR-5UTR	ENST00000368655	ENST00000481009		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A4	chr1	153517285	-
5UTR-5UTR	ENST00000368655	ENST00000354332		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A4	chr1	153517285	-
5UTR-5UTR	ENST00000368655	ENST00000368716		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A4	chr1	153517285	-
5UTR-5UTR	ENST00000368655	ENST00000368714		TCGA	LD	SKCM	TCGA-FS-A1YW-06A	GATAD2B	chr1	153895209	-	S100A4	chr1	153517285	-
Frame-shit	ENST00000419445	ENST00000379611		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000419445	ENST00000512261		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000419445	ENST00000506442		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000419445	ENST00000395557		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
5CDS-5UTR	ENST00000419445	ENST00000503027		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000379615	ENST00000379611		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000379615	ENST00000512261		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000379615	ENST00000506442		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
Frame-shit	ENST00000379615	ENST00000395557		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
5CDS-5UTR	ENST00000379615	ENST00000503027		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
intron-3CDS	ENST00000514178	ENST00000379611		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
intron-3CDS	ENST00000514178	ENST00000512261		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
intron-3CDS	ENST00000514178	ENST00000506442		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
intron-3CDS	ENST00000514178	ENST00000395557		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
intron-5UTR	ENST00000514178	ENST00000503027		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	PGGT1B	chr5	114598409	-	CCDC112	chr5	114611303	-
intron-3CDS	ENST00000493599	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-3CDS	ENST00000493599	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-3CDS	ENST00000493599	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-3CDS	ENST00000493599	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-3CDS	ENST00000493599	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-3CDS	ENST00000493599	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-3CDS	ENST00000493599	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
intron-intron	ENST00000493599	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372227	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372227	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372227	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372227	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372227	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
In-frame	ENST00000372227	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372227	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
5CDS-intron	ENST00000372227	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372229	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
In-frame	ENST00000372229	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372229	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372229	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372229	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372229	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372229	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
5CDS-intron	ENST00000372229	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372230	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
In-frame	ENST00000372230	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372230	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372230	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372230	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372230	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000372230	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
5CDS-intron	ENST00000372230	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000243896	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
In-frame	ENST00000243896	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000243896	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000243896	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000243896	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000243896	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000243896	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
5CDS-intron	ENST00000243896	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000317734	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
In-frame	ENST00000317734	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000317734	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000317734	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000317734	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000317734	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000317734	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
5CDS-intron	ENST00000317734	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000543605	ENST00000290246		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
In-frame	ENST00000543605	ENST00000372176		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000543605	ENST00000396391		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000543605	ENST00000439931		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000543605	ENST00000445496		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000543605	ENST00000454865		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000543605	ENST00000352077		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
5CDS-intron	ENST00000543605	ENST00000488853		TCGA	LD	SKCM	TCGA-FS-A1YX-06A	SLC35C2	chr20	44983521	-	ELMO2	chr20	44996199	-
Frame-shit	ENST00000431975	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-5UTR	ENST00000431975	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000431975	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000431975	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
Frame-shit	ENST00000541650	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-5UTR	ENST00000541650	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000541650	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000541650	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-3CDS	ENST00000366358	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-5UTR	ENST00000366358	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-intron	ENST00000366358	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-intron	ENST00000366358	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
Frame-shit	ENST00000368123	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-5UTR	ENST00000368123	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000368123	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000368123	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
Frame-shit	ENST00000537868	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-5UTR	ENST00000537868	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000537868	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000537868	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
Frame-shit	ENST00000263050	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-5UTR	ENST00000263050	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000263050	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
5CDS-intron	ENST00000263050	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-3CDS	ENST00000342266	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-5UTR	ENST00000342266	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-intron	ENST00000342266	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-intron	ENST00000342266	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-3CDS	ENST00000474850	ENST00000397944		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-5UTR	ENST00000474850	ENST00000367493		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-intron	ENST00000474850	ENST00000523560		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
intron-intron	ENST00000474850	ENST00000367488		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	AKAP7	chr6	131540948	+	ADGB	chr6	146956511	+
In-frame	ENST00000342056	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000342056	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000342056	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000342056	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000342056	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000342056	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000355194	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000355194	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000355194	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000355194	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000355194	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000355194	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000370398	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000370398	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000370398	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000370398	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000370398	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000370398	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000370392	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000370392	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000370392	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000370392	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000370392	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000370392	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000355635	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000355635	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000355635	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000355635	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000355635	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000355635	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000414165	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000414165	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000414165	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000414165	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000414165	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000414165	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000402622	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000402622	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000402622	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000402622	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000402622	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000402622	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000403813	ENST00000521654		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
In-frame	ENST00000403813	ENST00000560949		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-intron	ENST00000403813	ENST00000454842		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000403813	ENST00000368414		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000403813	ENST00000359704		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
5CDS-5UTR	ENST00000403813	ENST00000275184		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	KCNQ5	chr6	73713721	+	RNF217	chr6	125397803	+
Frame-shit	ENST00000361131	ENST00000257787		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	PPP1R14C	chr6	150464634	+	AKIRIN2	chr6	88391481	-
5CDS-intron	ENST00000361131	ENST00000420494		TCGA	LD	SKCM	TCGA-FS-A1Z0-06A	PPP1R14C	chr6	150464634	+	AKIRIN2	chr6	88391481	-
Frame-shit	ENST00000375300	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000375300	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5CDS-5UTR	ENST00000375300	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000292055	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000292055	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5CDS-5UTR	ENST00000292055	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5UTR-3CDS	ENST00000375288	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5UTR-3CDS	ENST00000375288	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5UTR-5UTR	ENST00000375288	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5UTR-3CDS	ENST00000434315	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5UTR-3CDS	ENST00000434315	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5UTR-5UTR	ENST00000434315	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000542607	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000542607	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5CDS-5UTR	ENST00000542607	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000446921	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
Frame-shit	ENST00000446921	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5CDS-5UTR	ENST00000446921	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
intron-3CDS	ENST00000488337	ENST00000320934		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
intron-3CDS	ENST00000488337	ENST00000540028		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
intron-5UTR	ENST00000488337	ENST00000529458		TCGA	LD	SKCM	TCGA-FS-A1Z3-06A	SIK3	chr11	116968859	-	PCSK7	chr11	117078780	-
5CDS-5UTR	ENST00000238789	ENST00000335934		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
5CDS-5UTR	ENST00000238789	ENST00000238721		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
5CDS-intron	ENST00000238789	ENST00000313482		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
5CDS-intron	ENST00000238789	ENST00000407482		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
5CDS-intron	ENST00000238789	ENST00000417886		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
intron-5UTR	ENST00000474583	ENST00000335934		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
intron-5UTR	ENST00000474583	ENST00000238721		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000474583	ENST00000313482		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000474583	ENST00000407482		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
intron-intron	ENST00000474583	ENST00000417886		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ATAD2B	chr2	24149425	-	TP53I3	chr2	24307730	-
In-frame	ENST00000344773	ENST00000306908		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
5CDS-5UTR	ENST00000344773	ENST00000523428		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
In-frame	ENST00000379624	ENST00000306908		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
5CDS-5UTR	ENST00000379624	ENST00000523428		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
In-frame	ENST00000342045	ENST00000306908		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
5CDS-5UTR	ENST00000342045	ENST00000523428		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
In-frame	ENST00000379632	ENST00000306908		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
5CDS-5UTR	ENST00000379632	ENST00000523428		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
In-frame	ENST00000361704	ENST00000306908		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
5CDS-5UTR	ENST00000361704	ENST00000523428		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
3UTR-3CDS	ENST00000603461	ENST00000306908		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
3UTR-5UTR	ENST00000603461	ENST00000523428		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	BRE	chr2	28248287	+	ZNF57	chr19	2915520	+
5CDS-5UTR	ENST00000334528	ENST00000574590		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000334528	ENST00000575318		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334528	ENST00000572904		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334528	ENST00000262419		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334528	ENST00000432791		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334528	ENST00000393476		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000334528	ENST00000576248		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000561249	ENST00000574590		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000561249	ENST00000575318		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000561249	ENST00000572904		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000561249	ENST00000262419		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000561249	ENST00000432791		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000561249	ENST00000393476		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000561249	ENST00000576248		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000559047	ENST00000574590		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000559047	ENST00000575318		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000559047	ENST00000572904		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000559047	ENST00000262419		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000559047	ENST00000432791		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000559047	ENST00000393476		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000559047	ENST00000576248		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000558197	ENST00000574590		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000558197	ENST00000575318		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000558197	ENST00000572904		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000558197	ENST00000262419		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000558197	ENST00000432791		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000558197	ENST00000393476		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000558197	ENST00000576248		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000559150	ENST00000574590		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000559150	ENST00000575318		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000559150	ENST00000572904		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000559150	ENST00000262419		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000559150	ENST00000432791		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000559150	ENST00000393476		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000559150	ENST00000576248		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000320930	ENST00000574590		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000320930	ENST00000575318		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000320930	ENST00000572904		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000320930	ENST00000262419		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000320930	ENST00000432791		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000320930	ENST00000393476		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
intron-intron	ENST00000320930	ENST00000576248		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	FMN1	chr15	33357158	-	KANSL1	chr17	44249598	-
Frame-shit	ENST00000295452	ENST00000540306		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GABRG1	chr4	46125827	-	DHX8	chr17	41566817	+
Frame-shit	ENST00000295452	ENST00000262415		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GABRG1	chr4	46125827	-	DHX8	chr17	41566817	+
5CDS-intron	ENST00000324896	ENST00000530878		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000324896	ENST00000361897		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000324896	ENST00000493151		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000324896	ENST00000454693		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000353920	ENST00000530878		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000353920	ENST00000361897		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000353920	ENST00000493151		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000353920	ENST00000454693		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000346152	ENST00000530878		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000346152	ENST00000361897		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000346152	ENST00000493151		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000346152	ENST00000454693		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000416070	ENST00000530878		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000416070	ENST00000361897		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000416070	ENST00000493151		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000416070	ENST00000454693		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
intron-intron	ENST00000443166	ENST00000530878		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
intron-intron	ENST00000443166	ENST00000361897		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
intron-intron	ENST00000443166	ENST00000493151		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
intron-intron	ENST00000443166	ENST00000454693		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000438130	ENST00000530878		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000438130	ENST00000361897		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000438130	ENST00000493151		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-intron	ENST00000438130	ENST00000454693		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	GTF2I	chr7	74163788	+	NOS1AP	chr1	162270423	+
5CDS-5UTR	ENST00000420083	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000449870	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000318511	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000407004	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000589998	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000250241	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000592763	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000588657	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
5CDS-5UTR	ENST00000590261	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
intron-5UTR	ENST00000586544	ENST00000429566		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	ILF3	chr19	10789868	+	OR1M1	chr19	9203908	+
intron-intron	ENST00000574590	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000574590	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000574590	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000574590	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000574590	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000574590	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000575318	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000575318	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000575318	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000575318	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000575318	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000575318	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
5UTR-intron	ENST00000572904	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
5UTR-intron	ENST00000572904	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
5UTR-intron	ENST00000572904	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
5UTR-intron	ENST00000572904	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
5UTR-intron	ENST00000572904	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
5UTR-intron	ENST00000572904	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000262419	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000262419	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000262419	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000262419	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000262419	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000262419	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000432791	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000432791	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000432791	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000432791	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000432791	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000432791	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000393476	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000393476	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000393476	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000393476	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000393476	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000393476	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000576248	ENST00000334528		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000576248	ENST00000561249		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000576248	ENST00000559047		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000576248	ENST00000558197		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000576248	ENST00000559150		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
intron-intron	ENST00000576248	ENST00000320930		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	KANSL1	chr17	44270189	-	FMN1	chr15	33384404	-
In-frame	ENST00000167462	ENST00000337231		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	LLGL2	chr17	73560588	+	CDR2L	chr17	72995599	+
Frame-shit	ENST00000375227	ENST00000337231		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	LLGL2	chr17	73560588	+	CDR2L	chr17	72995599	+
In-frame	ENST00000392550	ENST00000337231		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	LLGL2	chr17	73560588	+	CDR2L	chr17	72995599	+
In-frame	ENST00000578363	ENST00000337231		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	LLGL2	chr17	73560588	+	CDR2L	chr17	72995599	+
In-frame	ENST00000577200	ENST00000337231		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	LLGL2	chr17	73560588	+	CDR2L	chr17	72995599	+
5CDS-5UTR	ENST00000421797	ENST00000274629		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
5CDS-5UTR	ENST00000421797	ENST00000521859		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
intron-5UTR	ENST00000429546	ENST00000274629		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
intron-5UTR	ENST00000429546	ENST00000521859		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
5CDS-5UTR	ENST00000352689	ENST00000274629		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
5CDS-5UTR	ENST00000352689	ENST00000521859		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
intron-5UTR	ENST00000498778	ENST00000274629		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
intron-5UTR	ENST00000498778	ENST00000521859		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MKLN1	chr7	131099469	+	KCNMB1	chr5	169812475	-
In-frame	ENST00000252674	ENST00000402746		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
In-frame	ENST00000252674	ENST00000399654		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
In-frame	ENST00000252674	ENST00000406869		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
In-frame	ENST00000252674	ENST00000265854		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
5CDS-intron	ENST00000252674	ENST00000486340		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
intron-3CDS	ENST00000585588	ENST00000402746		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
intron-3CDS	ENST00000585588	ENST00000399654		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
intron-3CDS	ENST00000585588	ENST00000406869		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
intron-3CDS	ENST00000585588	ENST00000265854		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
intron-intron	ENST00000585588	ENST00000486340		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	MLLT1	chr19	6230581	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000530878	ENST00000453279		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
Frame-shit	ENST00000530878	ENST00000257665		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
5CDS-intron	ENST00000530878	ENST00000473168		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
Frame-shit	ENST00000361897	ENST00000453279		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
Frame-shit	ENST00000361897	ENST00000257665		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
5CDS-intron	ENST00000361897	ENST00000473168		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-3CDS	ENST00000493151	ENST00000453279		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-3CDS	ENST00000493151	ENST00000257665		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-intron	ENST00000493151	ENST00000473168		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-3CDS	ENST00000454693	ENST00000453279		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-3CDS	ENST00000454693	ENST00000257665		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-intron	ENST00000454693	ENST00000473168		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	NOS1AP	chr1	162270496	+	POM121C	chr7	75048725	-
intron-3CDS	ENST00000397472	ENST00000380490		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000397472	ENST00000479597		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000319863	ENST00000380490		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000319863	ENST00000479597		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000526325	ENST00000380490		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000526325	ENST00000479597		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000442059	ENST00000380490		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000442059	ENST00000479597		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000524550	ENST00000380490		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000524550	ENST00000479597		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-3CDS	ENST00000529966	ENST00000380490		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
intron-intron	ENST00000529966	ENST00000479597		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	PDDC1	chr11	767294	-	ALOX5AP	chr13	31326189	+
5UTR-3CDS	ENST00000418115	ENST00000420323		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
5UTR-intron	ENST00000418115	ENST00000466628		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
5UTR-3CDS	ENST00000454011	ENST00000420323		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
5UTR-intron	ENST00000454011	ENST00000466628		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
5UTR-3CDS	ENST00000422781	ENST00000420323		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
5UTR-intron	ENST00000422781	ENST00000466628		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
intron-3CDS	ENST00000265538	ENST00000420323		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
intron-intron	ENST00000265538	ENST00000466628		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	RHOA	chr3	49449253	-	DNAH1	chr3	52360156	+
intron-3CDS	ENST00000437508	ENST00000451320		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000437508	ENST00000429148		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000437508	ENST00000353617		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000437508	ENST00000405727		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000437508	ENST00000356064		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-3UTR	ENST00000437508	ENST00000511289		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-3CDS	ENST00000494872	ENST00000451320		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000494872	ENST00000429148		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000494872	ENST00000353617		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000494872	ENST00000405727		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000494872	ENST00000356064		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-3UTR	ENST00000494872	ENST00000511289		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-3CDS	ENST00000338700	ENST00000451320		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000338700	ENST00000429148		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000338700	ENST00000353617		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000338700	ENST00000405727		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-intron	ENST00000338700	ENST00000356064		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
intron-3UTR	ENST00000338700	ENST00000511289		TCGA	LD	SKCM	TCGA-FS-A1Z4-06A	TRIM2	chr4	154073764	+	ARFIP1	chr4	153784758	+
5UTR-3CDS	ENST00000426256	ENST00000535622		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000400246		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000266091		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000382105		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000400249		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000382112		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000382111		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000426256	ENST00000400248		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3UTR	ENST00000426256	ENST00000494060		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-intron	ENST00000426256	ENST00000536766		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-intron	ENST00000426256	ENST00000400242		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-5UTR	ENST00000426256	ENST00000539165		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000535622		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000400246		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000266091		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000382105		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000400249		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000382112		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000382111		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000326132	ENST00000400248		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3UTR	ENST00000326132	ENST00000494060		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-intron	ENST00000326132	ENST00000536766		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-intron	ENST00000326132	ENST00000400242		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-5UTR	ENST00000326132	ENST00000539165		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000535622		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000400246		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000266091		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000382105		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000400249		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000382112		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000382111		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3CDS	ENST00000266252	ENST00000400248		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-3UTR	ENST00000266252	ENST00000494060		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-intron	ENST00000266252	ENST00000536766		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-intron	ENST00000266252	ENST00000400242		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
5UTR-5UTR	ENST00000266252	ENST00000539165		TCGA	LD	SKCM	TCGA-FS-A1Z7-06A	RNF185	chr22	31556289	+	DEPDC5	chr22	32253431	+
intron-5UTR	ENST00000391918	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
intron-3UTR	ENST00000391918	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5CDS-5UTR	ENST00000291295	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5CDS-3UTR	ENST00000291295	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5CDS-5UTR	ENST00000597743	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5CDS-3UTR	ENST00000597743	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
3UTR-5UTR	ENST00000477244	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
3UTR-3UTR	ENST00000477244	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5UTR-5UTR	ENST00000598871	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5UTR-3UTR	ENST00000598871	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5UTR-5UTR	ENST00000594523	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
5UTR-3UTR	ENST00000594523	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
intron-5UTR	ENST00000599839	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
intron-3UTR	ENST00000599839	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
intron-5UTR	ENST00000596362	ENST00000463705		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
intron-3UTR	ENST00000596362	ENST00000370263		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CALM3	chr19	47104694	+	CHRNA4	chr20	61975738	-
intron-intron	ENST00000520753	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520753	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520753	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520753	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520753	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000521613	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000521613	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000521613	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000521613	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000521613	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519940	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519940	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519940	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519940	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519940	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519332	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519332	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519332	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519332	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000519332	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520007	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520007	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520007	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520007	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520007	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000600800	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000600800	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000600800	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000600800	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000600800	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000357778	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000357778	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000357778	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000357778	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000357778	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000391898	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000391898	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000391898	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000391898	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000391898	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000359009	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000359009	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000359009	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000359009	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000359009	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000447740	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000447740	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000447740	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000447740	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000447740	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520153	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520153	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520153	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520153	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520153	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520015	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520015	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520015	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520015	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000520015	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000522431	ENST00000396504		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000522431	ENST00000355209		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000522431	ENST00000337566		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000522431	ENST00000407461		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
intron-intron	ENST00000522431	ENST00000420561		TCGA	LD	SKCM	TCGA-FS-A1ZD-06A	CARD8	chr19	48752734	-	POLR3H	chr22	41926900	-
5CDS-intron	ENST00000279024	ENST00000373973		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	KIAA1755	chr20	36851940	-	CNBD2	chr20	34545643	+
5CDS-intron	ENST00000279024	ENST00000349339		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	KIAA1755	chr20	36851940	-	CNBD2	chr20	34545643	+
5CDS-intron	ENST00000279024	ENST00000538900		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	KIAA1755	chr20	36851940	-	CNBD2	chr20	34545643	+
5UTR-5UTR	ENST00000375571	ENST00000246229		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	MAPRE1	chr20	31407834	+	PLAGL2	chr20	30790095	-
Frame-shit	ENST00000222644	ENST00000265395		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	MPP6	chr7	24720139	+	HIBADH	chr7	27689242	-
Frame-shit	ENST00000409761	ENST00000265395		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	MPP6	chr7	24720139	+	HIBADH	chr7	27689242	-
Frame-shit	ENST00000396475	ENST00000265395		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	MPP6	chr7	24720139	+	HIBADH	chr7	27689242	-
5CDS-5UTR	ENST00000375749	ENST00000375571		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	POFUT1	chr20	30804524	+	MAPRE1	chr20	31413731	+
5CDS-5UTR	ENST00000375730	ENST00000375571		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	POFUT1	chr20	30804524	+	MAPRE1	chr20	31413731	+
intron-5UTR	ENST00000539210	ENST00000375571		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	POFUT1	chr20	30804524	+	MAPRE1	chr20	31413731	+
3UTR-5UTR	ENST00000486717	ENST00000375571		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	POFUT1	chr20	30804524	+	MAPRE1	chr20	31413731	+
5CDS-5UTR	ENST00000237536	ENST00000375114		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000237536	ENST00000246194		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
5CDS-intron	ENST00000237536	ENST00000493399		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000279034	ENST00000375114		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000279034	ENST00000246194		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-intron	ENST00000279034	ENST00000493399		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000456801	ENST00000375114		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000456801	ENST00000246194		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-intron	ENST00000456801	ENST00000493399		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000357779	ENST00000375114		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000357779	ENST00000246194		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-intron	ENST00000357779	ENST00000493399		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	SOGA1	chr20	35491061	-	RALY	chr20	32619328	+
intron-5UTR	ENST00000359486	ENST00000491545		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000359486	ENST00000435456		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000359486	ENST00000402844		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000359486	ENST00000544408		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000359486	ENST00000542412		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000335626	ENST00000491545		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000335626	ENST00000435456		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000335626	ENST00000402844		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000335626	ENST00000544408		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000335626	ENST00000542412		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000404876	ENST00000491545		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000404876	ENST00000435456		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000404876	ENST00000402844		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000404876	ENST00000544408		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000404876	ENST00000542412		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	TCF20	chr22	42739485	-	SLC25A17	chr22	41175129	-
Frame-shit	ENST00000288828	ENST00000223029		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000288828	ENST00000400479		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000288828	ENST00000395236		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000401525	ENST00000223029		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000401525	ENST00000400479		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000401525	ENST00000395236		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000404704	ENST00000223029		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000404704	ENST00000400479		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000404704	ENST00000395236		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
intron-3CDS	ENST00000485854	ENST00000223029		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
intron-3CDS	ENST00000485854	ENST00000400479		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
intron-3CDS	ENST00000485854	ENST00000395236		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000382384	ENST00000223029		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000382384	ENST00000400479		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000382384	ENST00000395236		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000484262	ENST00000223029		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000484262	ENST00000400479		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
Frame-shit	ENST00000484262	ENST00000395236		TCGA	LD	SKCM	TCGA-FS-A1ZE-06A	WIPI2	chr7	5257645	+	AIMP2	chr7	6062934	+
5CDS-3UTR	ENST00000548256	ENST00000549231		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-5UTR	ENST00000548256	ENST00000355673		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-5UTR	ENST00000548256	ENST00000431731		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5UTR-3UTR	ENST00000551420	ENST00000549231		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5UTR-5UTR	ENST00000551420	ENST00000355673		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5UTR-5UTR	ENST00000551420	ENST00000431731		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-3UTR	ENST00000300209	ENST00000549231		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-5UTR	ENST00000300209	ENST00000355673		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-5UTR	ENST00000300209	ENST00000431731		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
intron-3UTR	ENST00000552307	ENST00000549231		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
intron-5UTR	ENST00000552307	ENST00000355673		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
intron-5UTR	ENST00000552307	ENST00000431731		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-3UTR	ENST00000333012	ENST00000549231		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-5UTR	ENST00000333012	ENST00000355673		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
5CDS-5UTR	ENST00000333012	ENST00000431731		TCGA	LD	SKCM	TCGA-FS-A1ZF-06A	METTL21B	chr12	58166911	+	MBD6	chr12	57917812	+
Frame-shit	ENST00000319445	ENST00000366508		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000319445	ENST00000326225		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000319445	ENST00000391829		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
5CDS-5UTR	ENST00000319445	ENST00000470300		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000360242	ENST00000366508		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000360242	ENST00000326225		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000360242	ENST00000391829		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
5CDS-5UTR	ENST00000360242	ENST00000470300		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000584156	ENST00000366508		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000584156	ENST00000326225		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000584156	ENST00000391829		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
5CDS-5UTR	ENST00000584156	ENST00000470300		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-3CDS	ENST00000358653	ENST00000366508		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-3CDS	ENST00000358653	ENST00000326225		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-3CDS	ENST00000358653	ENST00000391829		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-5UTR	ENST00000358653	ENST00000470300		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-3CDS	ENST00000577772	ENST00000366508		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-3CDS	ENST00000577772	ENST00000326225		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-3CDS	ENST00000577772	ENST00000391829		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
intron-5UTR	ENST00000577772	ENST00000470300		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	CCDC102B	chr18	66678341	+	AHCTF1	chr1	247007230	-
Frame-shit	ENST00000280886	ENST00000606784		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
Frame-shit	ENST00000280886	ENST00000369663		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
5CDS-5UTR	ENST00000280886	ENST00000606521		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
Frame-shit	ENST00000381496	ENST00000606784		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
Frame-shit	ENST00000381496	ENST00000369663		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
5CDS-5UTR	ENST00000381496	ENST00000606521		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
intron-3CDS	ENST00000540204	ENST00000606784		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
intron-3CDS	ENST00000540204	ENST00000369663		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
intron-5UTR	ENST00000540204	ENST00000606521		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	DIP2C	chr10	486811	-	TBX18	chr6	85470074	-
In-frame	ENST00000271640	ENST00000409426		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000271640	ENST00000441902		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000271640	ENST00000368890		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000271640	ENST00000368888		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
5CDS-intron	ENST00000271640	ENST00000464105		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
5CDS-intron	ENST00000271640	ENST00000414290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368962	ENST00000409426		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368962	ENST00000441902		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368962	ENST00000368890		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368962	ENST00000368888		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-intron	ENST00000368962	ENST00000464105		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-intron	ENST00000368962	ENST00000414290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000368969	ENST00000409426		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000368969	ENST00000441902		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000368969	ENST00000368890		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
In-frame	ENST00000368969	ENST00000368888		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
5CDS-intron	ENST00000368969	ENST00000464105		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
5CDS-intron	ENST00000368969	ENST00000414290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368963	ENST00000409426		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368963	ENST00000441902		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368963	ENST00000368890		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000368963	ENST00000368888		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-intron	ENST00000368963	ENST00000464105		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-intron	ENST00000368963	ENST00000414290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000459773	ENST00000409426		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000459773	ENST00000441902		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000459773	ENST00000368890		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-3CDS	ENST00000459773	ENST00000368888		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-intron	ENST00000459773	ENST00000464105		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
intron-intron	ENST00000459773	ENST00000414290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	SETDB1	chr1	150923957	+	PIP5K1A	chr1	151219396	+
5CDS-5UTR	ENST00000361905	ENST00000396441		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361905	ENST00000389707		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361905	ENST00000401424		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361905	ENST00000389708		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361905	ENST00000361003		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361905	ENST00000403290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361905	ENST00000403510		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000361905	ENST00000403482		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000361905	ENST00000497429		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000396441		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000389707		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000401424		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000389708		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000361003		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000403290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527636	ENST00000403510		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000527636	ENST00000403482		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000527636	ENST00000497429		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000396441		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000389707		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000401424		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000389708		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000361003		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000403290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000527575	ENST00000403510		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000527575	ENST00000403482		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000527575	ENST00000497429		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000396441		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000389707		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000401424		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000389708		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000361003		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000403290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000334310	ENST00000403510		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000334310	ENST00000403482		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000334310	ENST00000497429		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000396441		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000389707		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000401424		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000389708		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000361003		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000403290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-5UTR	ENST00000361985	ENST00000403510		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000361985	ENST00000403482		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
5CDS-intron	ENST00000361985	ENST00000497429		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000396441		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000389707		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000401424		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000389708		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000361003		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000403290		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-5UTR	ENST00000526600	ENST00000403510		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-intron	ENST00000526600	ENST00000403482		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-intron	ENST00000526600	ENST00000497429		TCGA	LD	SKCM	TCGA-FS-A1ZJ-06A	TEAD1	chr11	12785981	+	ARNTL	chr11	13371492	+
intron-3CDS	ENST00000216267	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000216267	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000216267	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000216267	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000216267	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000216267	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3UTR	ENST00000216267	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-5UTR	ENST00000216267	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3CDS	ENST00000404034	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3CDS	ENST00000404034	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3CDS	ENST00000404034	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3CDS	ENST00000404034	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3CDS	ENST00000404034	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3CDS	ENST00000404034	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-3UTR	ENST00000404034	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
5UTR-5UTR	ENST00000404034	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000404760	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000404760	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000404760	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000404760	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000404760	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000404760	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3UTR	ENST00000404760	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-5UTR	ENST00000404760	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000457780	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000457780	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000457780	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000457780	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000457780	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000457780	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3UTR	ENST00000457780	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-5UTR	ENST00000457780	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000542442	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000542442	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000542442	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000542442	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000542442	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000542442	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3UTR	ENST00000542442	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-5UTR	ENST00000542442	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000342989	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000342989	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000342989	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000342989	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000342989	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000342989	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3UTR	ENST00000342989	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-5UTR	ENST00000342989	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000459821	ENST00000377892		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000459821	ENST00000377890		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000459821	ENST00000377891		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000459821	ENST00000377889		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000459821	ENST00000535296		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3CDS	ENST00000459821	ENST00000338663		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-3UTR	ENST00000459821	ENST00000538682		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
intron-5UTR	ENST00000459821	ENST00000536981		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	BRD1	chr22	50219378	-	SLC3A2	chr11	62652649	+
Frame-shit	ENST00000263401	ENST00000379011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
5CDS-intron	ENST00000263401	ENST00000451594		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
Frame-shit	ENST00000452374	ENST00000379011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
5CDS-intron	ENST00000452374	ENST00000451594		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
Frame-shit	ENST00000532705	ENST00000379011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
5CDS-intron	ENST00000532705	ENST00000451594		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
intron-3CDS	ENST00000533308	ENST00000379011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
intron-intron	ENST00000533308	ENST00000451594		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	COMMD9	chr11	36300027	-	C11orf91	chr11	33720060	-
intron-3CDS	ENST00000341217	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000341217	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000341217	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000581407	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000581407	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000581407	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000582266	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000582266	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000582266	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
5UTR-3CDS	ENST00000452648	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
5UTR-intron	ENST00000452648	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
5UTR-intron	ENST00000452648	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000582059	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000582059	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000582059	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000583953	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000583953	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000583953	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000577682	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000577682	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000577682	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000583522	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000583522	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000583522	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-3CDS	ENST00000581381	ENST00000324238		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000581381	ENST00000544695		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
intron-intron	ENST00000581381	ENST00000577725		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	FAM222B	chr17	27139227	-	CRLF3	chr17	29131126	-
5UTR-3UTR	ENST00000248996	ENST00000534302		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	GNAZ	chr22	23412756	+	TDH	chr8	11222229	+
intron-3UTR	ENST00000492538	ENST00000534302		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	GNAZ	chr22	23412756	+	TDH	chr8	11222229	+
5UTR-intron	ENST00000586178	ENST00000504876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	MBTD1	chr17	49336504	-	PART1	chr5	59825231	+
intron-intron	ENST00000415868	ENST00000504876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	MBTD1	chr17	49336504	-	PART1	chr5	59825231	+
5UTR-intron	ENST00000376381	ENST00000504876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	MBTD1	chr17	49336504	-	PART1	chr5	59825231	+
intron-intron	ENST00000593259	ENST00000504876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	MBTD1	chr17	49336504	-	PART1	chr5	59825231	+
In-frame	ENST00000405486	ENST00000375050		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000453487		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000549520		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000551389		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000549406		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000453961		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000553136		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000547363		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000552094		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000420432		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000553184		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000550085		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000383270		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000551651		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000546984		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000550532		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000431537		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000549894		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000548572		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000546976		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000433552		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000550227		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000549969		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000405486	ENST00000548776		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
Frame-shit	ENST00000356244	ENST00000375050		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000453487		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000549520		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000551389		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000549406		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000453961		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000553136		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000547363		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000552094		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000420432		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000553184		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000550085		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000383270		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000551651		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000546984		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000550532		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000431537		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000549894		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000548572		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000546976		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000433552		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000550227		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000549969		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000356244	ENST00000548776		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
Frame-shit	ENST00000455915	ENST00000375050		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000453487		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000549520		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000551389		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000549406		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000453961		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000553136		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000547363		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000552094		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000420432		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000553184		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000550085		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000383270		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000551651		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000546984		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000550532		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000431537		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000549894		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000548572		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000546976		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000433552		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000550227		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000549969		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000455915	ENST00000548776		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
Frame-shit	ENST00000407260	ENST00000375050		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000453487		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000549520		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000551389		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000549406		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000453961		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000553136		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000547363		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000552094		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000420432		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000553184		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000550085		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000383270		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000551651		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000546984		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000550532		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000431537		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000549894		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000548572		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000546976		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000433552		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000550227		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000549969		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-intron	ENST00000407260	ENST00000548776		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RANGAP1	chr22	41653952	-	PBX2	chr6	32156281	-
5CDS-5UTR	ENST00000405409	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000405409	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000405409	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000405409	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000405409	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000405409	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000414461	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000414461	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000414461	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000414461	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000414461	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000414461	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000449924	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000449924	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000449924	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000449924	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000449924	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000449924	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000262829	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000262829	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000262829	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000262829	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000262829	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000262829	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000397303	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000397303	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000397303	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000397303	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000397303	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000397303	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000359369	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000359369	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000359369	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000359369	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000359369	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000359369	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000416721	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000416721	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000416721	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000416721	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000416721	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000416721	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000438146	ENST00000355630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000438146	ENST00000396617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000438146	ENST00000402042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000438146	ENST00000466278		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000438146	ENST00000407029		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000438146	ENST00000402630		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	RBFOX2	chr22	36142520	-	MKL1	chr22	40859290	-
Frame-shit	ENST00000380817	ENST00000278550		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
5CDS-intron	ENST00000380817	ENST00000533038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
Frame-shit	ENST00000348911	ENST00000278550		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
5CDS-intron	ENST00000348911	ENST00000533038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
Frame-shit	ENST00000390679	ENST00000278550		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
5CDS-intron	ENST00000390679	ENST00000533038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
intron-3CDS	ENST00000476293	ENST00000278550		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
intron-intron	ENST00000476293	ENST00000533038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SBF1	chr22	50905767	-	TENM4	chr11	78468066	-
In-frame	ENST00000437398	ENST00000523430		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
In-frame	ENST00000437398	ENST00000265896		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
In-frame	ENST00000314328	ENST00000523430		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
In-frame	ENST00000314328	ENST00000265896		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
In-frame	ENST00000541492	ENST00000523430		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
In-frame	ENST00000541492	ENST00000265896		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
intron-3CDS	ENST00000416735	ENST00000523430		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
intron-3CDS	ENST00000416735	ENST00000265896		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SPECC1L	chr22	24765288	+	SQLE	chr8	126015418	+
Frame-shit	ENST00000456758	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-5UTR	ENST00000456758	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-5UTR	ENST00000456758	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-intron	ENST00000456758	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-3CDS	ENST00000457378	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-5UTR	ENST00000457378	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-5UTR	ENST00000457378	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000457378	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-3CDS	ENST00000389574	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-5UTR	ENST00000389574	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-5UTR	ENST00000389574	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000389574	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-3CDS	ENST00000452783	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-5UTR	ENST00000452783	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-5UTR	ENST00000452783	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5UTR-intron	ENST00000452783	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-3CDS	ENST00000405266	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000405266	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000405266	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000405266	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-3CDS	ENST00000401592	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000401592	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000401592	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000401592	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-3CDS	ENST00000403868	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000403868	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000403868	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000403868	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-3CDS	ENST00000425407	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000425407	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000425407	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000425407	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-3CDS	ENST00000469755	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000469755	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000469755	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000469755	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-3CDS	ENST00000413514	ENST00000395952		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000413514	ENST00000375842		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-5UTR	ENST00000413514	ENST00000440843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000471644		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000538874		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000550556		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000547161		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000464268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000444818		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000551038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000549543		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000494438		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000413853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000549853		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000547325		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000488103		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000457366		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000548592		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000482058		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000446529		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000552042		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000546528		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000475067		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000429735		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000549722		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000550719		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000495335		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
intron-intron	ENST00000413514	ENST00000432617		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SUN1	chr7	856310	+	ABHD16A	chr6	31659695	-
5CDS-5UTR	ENST00000358763	ENST00000375640		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000358763	ENST00000375641		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000358763	ENST00000375638		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000358763	ENST00000375635		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000375639		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000358763	ENST00000375642		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000358763	ENST00000395789		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000358763	ENST00000375633		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000395788		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000424962		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000456268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000435938		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000433752		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000458514		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000549426		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000550200		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000430690		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000436558		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000456690		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000439907		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000444974		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000439865		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000413638		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000423640		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000444192		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000551797		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000552514		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000440361		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000443974		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000416886		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000436205		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000450610		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000433697		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000414434		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000421605		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000444331		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000551957		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000550492		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000423916		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000436495		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000426843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000421039		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000414536		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000400038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000383384		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000383385		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000383383		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000547624		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000550685		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000400037		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000400035		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000400034		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000358763	ENST00000400039		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000375640		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000375641		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000375638		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000375635		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000375639		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000375642		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000395789		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-5UTR	ENST00000332840	ENST00000375633		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000395788		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000424962		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000456268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000435938		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000433752		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000458514		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000549426		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000550200		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000430690		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000436558		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000456690		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000439907		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000444974		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000439865		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000413638		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000423640		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000444192		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000551797		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000552514		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000440361		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000443974		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000416886		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000436205		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000450610		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000433697		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000414434		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000421605		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000444331		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000551957		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000550492		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000423916		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000436495		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000426843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000421039		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000414536		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000400038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000383384		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000383385		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000383383		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000547624		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000550685		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000400037		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000400035		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000400034		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
5CDS-intron	ENST00000332840	ENST00000400039		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000375640		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000375641		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000375638		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000375635		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000375639		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000375642		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000395789		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-5UTR	ENST00000467095	ENST00000375633		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000395788		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000424962		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000456268		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000435938		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000433752		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000458514		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000549426		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000550200		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000430690		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000436558		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000456690		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000439907		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000444974		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000439865		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000413638		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000423640		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000444192		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000551797		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000552514		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000440361		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000443974		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000416886		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000436205		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000450610		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000433697		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000414434		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000421605		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000444331		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000551957		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000550492		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000423916		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000436495		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000426843		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000421039		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000414536		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000400038		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000383384		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000383385		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000383383		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000547624		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000550685		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000400037		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000400035		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000400034		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-intron	ENST00000467095	ENST00000400039		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	SYN3	chr22	32992660	-	C6orf48	chr6	31803188	+
intron-3CDS	ENST00000597652	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000597652	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000596604	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000596604	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000597342	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000597342	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000597832	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000597832	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000595295	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000595295	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000600634	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000600634	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000435989	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000435989	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000597807	ENST00000360876		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
In-frame	ENST00000597807	ENST00000397011		TCGA	LD	SKCM	TCGA-FS-A1ZK-06A	ZNF814	chr19	58400135	-	EIF3B	chr7	2416585	+
intron-3CDS	ENST00000595437	ENST00000329003		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	FARP1	chr13	98795746	+	GALR2	chr17	74072717	+
5UTR-3CDS	ENST00000376586	ENST00000329003		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	FARP1	chr13	98795746	+	GALR2	chr17	74072717	+
5UTR-3CDS	ENST00000319562	ENST00000329003		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	FARP1	chr13	98795746	+	GALR2	chr17	74072717	+
5UTR-3CDS	ENST00000376581	ENST00000329003		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	FARP1	chr13	98795746	+	GALR2	chr17	74072717	+
intron-3CDS	ENST00000593990	ENST00000329003		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	FARP1	chr13	98795746	+	GALR2	chr17	74072717	+
5CDS-5UTR	ENST00000303460	ENST00000510325		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
5CDS-5UTR	ENST00000303460	ENST00000359359		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000303460	ENST00000480824		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000303460	ENST00000355190		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
5CDS-intron	ENST00000303460	ENST00000373685		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000511575	ENST00000510325		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
intron-5UTR	ENST00000511575	ENST00000359359		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
intron-intron	ENST00000511575	ENST00000480824		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
intron-intron	ENST00000511575	ENST00000355190		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
intron-intron	ENST00000511575	ENST00000373685		TCGA	LD	SKCM	TCGA-FS-A1ZM-06A	HOXC10	chr12	54379794	+	C6orf89	chr6	36846784	+
5UTR-3CDS	ENST00000370918	ENST00000274901		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000370918	ENST00000398661		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370918	ENST00000370850		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370918	ENST00000508459		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370918	ENST00000308161		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370918	ENST00000428842		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370918	ENST00000358072		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370918	ENST00000507223		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000304434	ENST00000274901		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000304434	ENST00000398661		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000304434	ENST00000370850		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000304434	ENST00000508459		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000304434	ENST00000308161		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000304434	ENST00000428842		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000304434	ENST00000358072		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000304434	ENST00000507223		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-3CDS	ENST00000542638	ENST00000274901		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-3CDS	ENST00000542638	ENST00000398661		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-intron	ENST00000542638	ENST00000370850		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-intron	ENST00000542638	ENST00000508459		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-intron	ENST00000542638	ENST00000308161		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-intron	ENST00000542638	ENST00000428842		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-intron	ENST00000542638	ENST00000358072		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
intron-intron	ENST00000542638	ENST00000507223		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000541407	ENST00000274901		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000541407	ENST00000398661		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000541407	ENST00000370850		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000541407	ENST00000508459		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000541407	ENST00000308161		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000541407	ENST00000428842		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000541407	ENST00000358072		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000541407	ENST00000507223		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000486973	ENST00000274901		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000486973	ENST00000398661		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000486973	ENST00000370850		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000486973	ENST00000508459		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000486973	ENST00000308161		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000486973	ENST00000428842		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000486973	ENST00000358072		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000486973	ENST00000507223		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000370913	ENST00000274901		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-3CDS	ENST00000370913	ENST00000398661		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370913	ENST00000370850		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370913	ENST00000508459		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370913	ENST00000308161		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370913	ENST00000428842		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370913	ENST00000358072		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
5UTR-intron	ENST00000370913	ENST00000507223		TCGA	LD	SKCM	TCGA-FS-A1ZN-01A	ELOVL5	chr6	53213615	-	HMGCLL1	chr6	55364097	-
In-frame	ENST00000334731	ENST00000396364		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000334731	ENST00000377270		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000334731	ENST00000396366		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000334731	ENST00000498653		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000377031	ENST00000396364		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000377031	ENST00000377270		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000377031	ENST00000396366		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000377031	ENST00000498653		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000486911	ENST00000396364		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000486911	ENST00000377270		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000486911	ENST00000396366		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
In-frame	ENST00000486911	ENST00000498653		TCGA	LD	SKCM	TCGA-FS-A1ZP-06A	C9orf85	chr9	74526752	+	FXN	chr9	71679854	+
intron-3CDS	ENST00000272203	ENST00000367142		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	PLEKHA6	chr1	204336927	-	NUCKS1	chr1	205698749	-
intron-intron	ENST00000272203	ENST00000464938		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	PLEKHA6	chr1	204336927	-	NUCKS1	chr1	205698749	-
intron-3CDS	ENST00000414478	ENST00000367142		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	PLEKHA6	chr1	204336927	-	NUCKS1	chr1	205698749	-
intron-intron	ENST00000414478	ENST00000464938		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	PLEKHA6	chr1	204336927	-	NUCKS1	chr1	205698749	-
intron-3CDS	ENST00000485632	ENST00000367142		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	PLEKHA6	chr1	204336927	-	NUCKS1	chr1	205698749	-
intron-intron	ENST00000485632	ENST00000464938		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	PLEKHA6	chr1	204336927	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	SKCM	TCGA-FS-A1ZQ-06A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000252996	ENST00000529093		TCGA	LD	SKCM	TCGA-FS-A1ZT-06A	TAF4	chr20	60639507	-	ENPP7P8	chr11	71442468	+
intron-intron	ENST00000609045	ENST00000529093		TCGA	LD	SKCM	TCGA-FS-A1ZT-06A	TAF4	chr20	60639507	-	ENPP7P8	chr11	71442468	+
In-frame	ENST00000367435	ENST00000367433		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
5CDS-intron	ENST00000367435	ENST00000498426		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
5CDS-intron	ENST00000367435	ENST00000367431		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
5CDS-intron	ENST00000367435	ENST00000609185		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
5CDS-5UTR	ENST00000367435	ENST00000451324		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
5CDS-5UTR	ENST00000367435	ENST00000294725		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
intron-3CDS	ENST00000477868	ENST00000367433		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
intron-intron	ENST00000477868	ENST00000498426		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
intron-intron	ENST00000477868	ENST00000367431		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
intron-intron	ENST00000477868	ENST00000609185		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
intron-5UTR	ENST00000477868	ENST00000451324		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
intron-5UTR	ENST00000477868	ENST00000294725		TCGA	LD	SKCM	TCGA-FS-A1ZU-06A	CDC73	chr1	193121574	+	KCNT2	chr1	196448368	-
5CDS-3UTR	ENST00000276585	ENST00000519049		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5CDS-intron	ENST00000276585	ENST00000523211		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5CDS-intron	ENST00000276585	ENST00000328472		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5CDS-3UTR	ENST00000521434	ENST00000519049		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5CDS-intron	ENST00000521434	ENST00000523211		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5CDS-intron	ENST00000521434	ENST00000328472		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
intron-3UTR	ENST00000521605	ENST00000519049		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
intron-intron	ENST00000521605	ENST00000523211		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
intron-intron	ENST00000521605	ENST00000328472		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5UTR-3UTR	ENST00000522987	ENST00000519049		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5UTR-intron	ENST00000522987	ENST00000523211		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
5UTR-intron	ENST00000522987	ENST00000328472		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	MRPS28	chr8	80915234	-	NKAIN3	chr8	63877913	+
intron-3CDS	ENST00000423701	ENST00000276585		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000423701	ENST00000521434		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000423701	ENST00000521605		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000423701	ENST00000522987		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000273156	ENST00000276585		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000273156	ENST00000521434		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000273156	ENST00000521605		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000273156	ENST00000522987		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000417572	ENST00000276585		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000417572	ENST00000521434		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000417572	ENST00000521605		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000417572	ENST00000522987		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000536332	ENST00000276585		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000536332	ENST00000521434		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000536332	ENST00000521605		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000536332	ENST00000522987		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000264454	ENST00000276585		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000264454	ENST00000521434		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000264454	ENST00000521605		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000264454	ENST00000522987		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000493107	ENST00000276585		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000493107	ENST00000521434		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-3CDS	ENST00000493107	ENST00000521605		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
intron-intron	ENST00000493107	ENST00000522987		TCGA	LD	SKCM	TCGA-FS-A1ZZ-06A	SEC22C	chr3	42623685	-	MRPS28	chr8	80831383	-
5CDS-5UTR	ENST00000608083	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000608083	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000377855	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000377855	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
intron-5UTR	ENST00000545482	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
intron-5UTR	ENST00000545482	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000361521	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000361521	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000377842	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000377842	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000377845	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000377845	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000541130	ENST00000478423		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
5CDS-5UTR	ENST00000541130	ENST00000378156		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	ACOT7	chr1	6409809	-	NPHP4	chr1	5993389	-
Frame-shit	ENST00000358506	ENST00000347454		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000358506	ENST00000445933		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000358506	ENST00000451130		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
In-frame	ENST00000358506	ENST00000493344		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000296122	ENST00000347454		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000296122	ENST00000445933		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000296122	ENST00000451130		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
In-frame	ENST00000296122	ENST00000493344		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000395366	ENST00000347454		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000395366	ENST00000445933		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
Frame-shit	ENST00000395366	ENST00000451130		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
In-frame	ENST00000395366	ENST00000493344		TCGA	LD	SKCM	TCGA-FS-A4F0-06A	PPP1CB	chr2	28975042	+	EIF2B4	chr2	27587466	-
In-frame	ENST00000338316	ENST00000350028		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
5CDS-intron	ENST00000338316	ENST00000493161		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
5CDS-5UTR	ENST00000338316	ENST00000396202		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-3CDS	ENST00000537121	ENST00000350028		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-intron	ENST00000537121	ENST00000493161		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-5UTR	ENST00000537121	ENST00000396202		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-3CDS	ENST00000513693	ENST00000350028		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-intron	ENST00000513693	ENST00000493161		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-5UTR	ENST00000513693	ENST00000396202		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	ADCY2	chr5	7414883	+	SAMM50	chr22	44359166	+
intron-3CDS	ENST00000361740	ENST00000216225		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	CYB5R3	chr22	43015843	-	RBX1	chr22	41360051	+
intron-3CDS	ENST00000396303	ENST00000216225		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	CYB5R3	chr22	43015843	-	RBX1	chr22	41360051	+
intron-3CDS	ENST00000352397	ENST00000216225		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	CYB5R3	chr22	43015843	-	RBX1	chr22	41360051	+
intron-3CDS	ENST00000407623	ENST00000216225		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	CYB5R3	chr22	43015843	-	RBX1	chr22	41360051	+
intron-3CDS	ENST00000407332	ENST00000216225		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	CYB5R3	chr22	43015843	-	RBX1	chr22	41360051	+
intron-3CDS	ENST00000402438	ENST00000216225		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	CYB5R3	chr22	43015843	-	RBX1	chr22	41360051	+
In-frame	ENST00000396231	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000396231	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000396231	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000396231	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000396231	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000396231	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
Frame-shit	ENST00000262726	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000262726	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000262726	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000262726	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000262726	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000262726	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
Frame-shit	ENST00000358439	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000358439	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000358439	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000358439	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000358439	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
5CDS-5UTR	ENST00000358439	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-3CDS	ENST00000356087	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000356087	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000356087	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000356087	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000356087	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000356087	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-3CDS	ENST00000461800	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000461800	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000461800	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000461800	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000461800	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-5UTR	ENST00000461800	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	EFCAB6	chr22	44112728	-	CYB5R3	chr22	43032852	-
intron-3CDS	ENST00000491671	ENST00000216218		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM118A	chr22	45706064	+	ST13	chr22	41246884	-
5UTR-3CDS	ENST00000216214	ENST00000216218		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM118A	chr22	45706064	+	ST13	chr22	41246884	-
5UTR-3CDS	ENST00000441876	ENST00000216218		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM118A	chr22	45706064	+	ST13	chr22	41246884	-
5UTR-3CDS	ENST00000405673	ENST00000216218		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM118A	chr22	45706064	+	ST13	chr22	41246884	-
intron-3CDS	ENST00000405548	ENST00000216218		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM118A	chr22	45706064	+	ST13	chr22	41246884	-
intron-3CDS	ENST00000402357	ENST00000290429		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
intron-intron	ENST00000402357	ENST00000327555		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
intron-intron	ENST00000402357	ENST00000464244		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
In-frame	ENST00000358295	ENST00000290429		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
5CDS-intron	ENST00000358295	ENST00000327555		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
5CDS-intron	ENST00000358295	ENST00000464244		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
3UTR-3CDS	ENST00000473898	ENST00000290429		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
3UTR-intron	ENST00000473898	ENST00000327555		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
3UTR-intron	ENST00000473898	ENST00000464244		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
intron-3CDS	ENST00000406880	ENST00000290429		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
intron-intron	ENST00000406880	ENST00000327555		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
intron-intron	ENST00000406880	ENST00000464244		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	FAM19A5	chr22	48972383	+	MCAT	chr22	43533304	-
In-frame	ENST00000381176	ENST00000216129		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	KIAA1644	chr22	44696759	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000381176	ENST00000494035		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	KIAA1644	chr22	44696759	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000381176	ENST00000484118		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	KIAA1644	chr22	44696759	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000215957	ENST00000342362		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000382002		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000231423		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000513753		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000397391		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000348262		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000542609		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000310101		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000511486		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
5CDS-intron	ENST00000215957	ENST00000509934		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000342362		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000382002		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000231423		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000513753		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000397391		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000348262		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000542609		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000310101		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000511486		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
3UTR-intron	ENST00000402631	ENST00000509934		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	MICALL1	chr22	38329119	+	PRLR	chr5	35153075	-
intron-3CDS	ENST00000347330	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-3CDS	ENST00000347330	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-intron	ENST00000347330	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-intron	ENST00000347330	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-intron	ENST00000347330	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-3CDS	ENST00000413209	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-3CDS	ENST00000413209	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-intron	ENST00000413209	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-intron	ENST00000413209	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-intron	ENST00000413209	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000338641	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000338641	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000338641	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000338641	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000338641	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000403435	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000403435	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000403435	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000403435	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000403435	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000361452	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000361452	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361452	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361452	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361452	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000403999	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000403999	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000403999	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000403999	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000403999	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000334961	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000334961	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000334961	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000334961	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000334961	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000353887	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000353887	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000353887	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000353887	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000353887	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000361166	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000361166	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361166	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361166	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361166	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000397789	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000397789	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000397789	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000397789	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000397789	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000361676	ENST00000396231		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
In-frame	ENST00000361676	ENST00000262726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361676	ENST00000358439		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361676	ENST00000356087		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
5CDS-intron	ENST00000361676	ENST00000461800		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	NF2	chr22	30051665	+	EFCAB6	chr22	44083461	-
intron-5UTR	ENST00000406477	ENST00000396000		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000406477	ENST00000262735		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000406477	ENST00000407236		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000406477	ENST00000481567		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000406477	ENST00000402126		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000406477	ENST00000434345		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-5UTR	ENST00000338758	ENST00000396000		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-5UTR	ENST00000338758	ENST00000262735		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-5UTR	ENST00000338758	ENST00000407236		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-intron	ENST00000338758	ENST00000481567		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-intron	ENST00000338758	ENST00000402126		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-intron	ENST00000338758	ENST00000434345		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000404989	ENST00000396000		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000404989	ENST00000262735		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000404989	ENST00000407236		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000404989	ENST00000481567		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000404989	ENST00000402126		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000404989	ENST00000434345		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000477795	ENST00000396000		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000477795	ENST00000262735		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-5UTR	ENST00000477795	ENST00000407236		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000477795	ENST00000481567		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000477795	ENST00000402126		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
intron-intron	ENST00000477795	ENST00000434345		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PARVB	chr22	44420331	+	PPARA	chr22	46547791	+
5CDS-intron	ENST00000255882	ENST00000403565		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000255882	ENST00000313237		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000255882	ENST00000396103		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000255882	ENST00000404079		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000255882	ENST00000447824		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-5UTR	ENST00000255882	ENST00000462631		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000572273	ENST00000403565		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000572273	ENST00000313237		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000572273	ENST00000396103		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000572273	ENST00000404079		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-intron	ENST00000572273	ENST00000447824		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
5CDS-5UTR	ENST00000572273	ENST00000462631		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000414196	ENST00000403565		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000414196	ENST00000313237		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000414196	ENST00000396103		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000414196	ENST00000404079		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000414196	ENST00000447824		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-5UTR	ENST00000414196	ENST00000462631		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000466162	ENST00000403565		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000466162	ENST00000313237		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000466162	ENST00000396103		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000466162	ENST00000404079		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-intron	ENST00000466162	ENST00000447824		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
intron-5UTR	ENST00000466162	ENST00000462631		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	PI4KA	chr22	21188850	-	PHF21B	chr22	45365085	-
In-frame	ENST00000356940	ENST00000321505		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000356940	ENST00000389726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000356940	ENST00000265654		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000535776	ENST00000321505		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000535776	ENST00000389726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000535776	ENST00000265654		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000375802	ENST00000321505		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000375802	ENST00000389726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
In-frame	ENST00000375802	ENST00000265654		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
3UTR-3CDS	ENST00000465772	ENST00000321505		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
3UTR-3CDS	ENST00000465772	ENST00000389726		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
3UTR-3CDS	ENST00000465772	ENST00000265654		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAB18	chr10	27798859	+	KIAA1549L	chr11	33573654	+
Frame-shit	ENST00000265109	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000265109	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000265109	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000265109	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000265109	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000265109	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000512629	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000512629	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000512629	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000512629	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000512629	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000512629	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000428746	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000428746	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000428746	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000428746	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000428746	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000428746	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000503673	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000503673	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000503673	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000503673	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000503673	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
Frame-shit	ENST00000503673	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
5UTR-3CDS	ENST00000515799	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
5UTR-3CDS	ENST00000515799	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
5UTR-3CDS	ENST00000515799	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
5UTR-3CDS	ENST00000515799	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
5UTR-3CDS	ENST00000515799	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
5UTR-3CDS	ENST00000515799	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000506376	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000506376	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000506376	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000506376	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000506376	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000506376	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000507276	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000507276	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000507276	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000507276	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000507276	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000507276	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000397449	ENST00000361740		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000397449	ENST00000396303		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000397449	ENST00000352397		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000397449	ENST00000407623		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000397449	ENST00000407332		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
intron-3CDS	ENST00000397449	ENST00000402438		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RAI14	chr5	34687060	+	CYB5R3	chr22	43015951	-
In-frame	ENST00000405486	ENST00000517296		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
In-frame	ENST00000405486	ENST00000389773		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000405486	ENST00000389774		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000405486	ENST00000336963		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000405486	ENST00000356099		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-3UTR	ENST00000405486	ENST00000469872		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
Frame-shit	ENST00000356244	ENST00000517296		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
Frame-shit	ENST00000356244	ENST00000389773		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000356244	ENST00000389774		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000356244	ENST00000336963		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000356244	ENST00000356099		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-3UTR	ENST00000356244	ENST00000469872		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
Frame-shit	ENST00000455915	ENST00000517296		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
Frame-shit	ENST00000455915	ENST00000389773		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000455915	ENST00000389774		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000455915	ENST00000336963		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000455915	ENST00000356099		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-3UTR	ENST00000455915	ENST00000469872		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
Frame-shit	ENST00000407260	ENST00000517296		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
Frame-shit	ENST00000407260	ENST00000389773		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000407260	ENST00000389774		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000407260	ENST00000336963		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-5UTR	ENST00000407260	ENST00000356099		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
5CDS-3UTR	ENST00000407260	ENST00000469872		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41670604	-	ARHGAP8	chr22	45182337	+
In-frame	ENST00000405486	ENST00000216264		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
In-frame	ENST00000405486	ENST00000541677		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
5CDS-intron	ENST00000405486	ENST00000471929		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
Frame-shit	ENST00000356244	ENST00000216264		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
Frame-shit	ENST00000356244	ENST00000541677		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
5CDS-intron	ENST00000356244	ENST00000471929		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
Frame-shit	ENST00000455915	ENST00000216264		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
Frame-shit	ENST00000455915	ENST00000541677		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
5CDS-intron	ENST00000455915	ENST00000471929		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
Frame-shit	ENST00000407260	ENST00000216264		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
Frame-shit	ENST00000407260	ENST00000541677		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
5CDS-intron	ENST00000407260	ENST00000471929		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	RANGAP1	chr22	41664101	-	CERK	chr22	47083103	-
In-frame	ENST00000337137	ENST00000263245		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000337137	ENST00000429508		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000337137	ENST00000437119		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000380995	ENST00000263245		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000380995	ENST00000429508		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000380995	ENST00000437119		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000407381	ENST00000263245		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000407381	ENST00000429508		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000407381	ENST00000437119		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000355704	ENST00000263245		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000355704	ENST00000429508		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000355704	ENST00000437119		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
intron-3CDS	ENST00000472791	ENST00000263245		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
intron-3CDS	ENST00000472791	ENST00000429508		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
intron-3CDS	ENST00000472791	ENST00000437119		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000406733	ENST00000263245		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000406733	ENST00000429508		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
In-frame	ENST00000406733	ENST00000437119		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TBC1D22A	chr22	47189738	+	ARFGAP3	chr22	43219708	-
5CDS-intron	ENST00000215742	ENST00000401850		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-intron	ENST00000215742	ENST00000249005		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-intron	ENST00000215742	ENST00000381278		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-5UTR	ENST00000215742	ENST00000465765		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-intron	ENST00000399133	ENST00000401850		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-intron	ENST00000399133	ENST00000249005		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-intron	ENST00000399133	ENST00000381278		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5CDS-5UTR	ENST00000399133	ENST00000465765		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	THAP7	chr22	21354936	-	A4GALT	chr22	43091637	-
5UTR-3UTR	ENST00000337554	ENST00000479606		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000337554	ENST00000215739		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000337554	ENST00000389355		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000396265	ENST00000479606		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000396265	ENST00000215739		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000396265	ENST00000389355		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000583777	ENST00000479606		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000583777	ENST00000215739		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3UTR	ENST00000583777	ENST00000389355		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
intron-3UTR	ENST00000329563	ENST00000479606		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
intron-3UTR	ENST00000329563	ENST00000215739		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
intron-3UTR	ENST00000329563	ENST00000389355		TCGA	LD	SKCM	TCGA-FS-A4F4-06A	TSPO	chr22	43547610	+	LZTR1	chr22	21341793	+
5UTR-3CDS	ENST00000270189	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000270189	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000270189	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000270189	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429089	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429089	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429089	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000429089	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000220809	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000220809	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000220809	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000220809	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000352041	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000352041	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000352041	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000352041	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000519510	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000519510	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000519510	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000519510	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429710	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429710	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000429710	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000429710	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000524009	ENST00000311915		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000524009	ENST00000544871		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-3CDS	ENST00000524009	ENST00000398055		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
5UTR-intron	ENST00000524009	ENST00000540673		TCGA	LD	SKCM	TCGA-FS-A4FB-06A	PLAT	chr8	42065012	-	C12orf66	chr12	64609743	-
Frame-shit	ENST00000413366	ENST00000226021		TCGA	LD	SKCM	TCGA-FS-A4FD-06A	PRKCA	chr17	64685165	+	CACNG1	chr17	65050112	+
intron-3CDS	ENST00000583361	ENST00000226021		TCGA	LD	SKCM	TCGA-FS-A4FD-06A	PRKCA	chr17	64685165	+	CACNG1	chr17	65050112	+
5UTR-3CDS	ENST00000560626	ENST00000394907		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000560626	ENST00000535975		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000560626	ENST00000305435		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000560626	ENST00000563582		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-3CDS	ENST00000558305	ENST00000394907		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000558305	ENST00000535975		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000558305	ENST00000305435		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000558305	ENST00000563582		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
intron-3CDS	ENST00000567337	ENST00000394907		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
intron-intron	ENST00000567337	ENST00000535975		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
intron-intron	ENST00000567337	ENST00000305435		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
intron-intron	ENST00000567337	ENST00000563582		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-3CDS	ENST00000312493	ENST00000394907		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000312493	ENST00000535975		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000312493	ENST00000305435		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
5UTR-intron	ENST00000312493	ENST00000563582		TCGA	LD	SKCM	TCGA-FW-A3I3-06A	PEAK1	chr15	77544709	-	NRG4	chr15	76235995	-
Frame-shit	ENST00000511367	ENST00000310581		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
In-frame	ENST00000511367	ENST00000296820		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000511367	ENST00000334602		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000511367	ENST00000508104		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000511367	ENST00000522877		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000442743	ENST00000310581		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
In-frame	ENST00000442743	ENST00000296820		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000442743	ENST00000334602		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000442743	ENST00000508104		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000442743	ENST00000522877		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000344624	ENST00000310581		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
In-frame	ENST00000344624	ENST00000296820		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000344624	ENST00000334602		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000344624	ENST00000508104		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000344624	ENST00000522877		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
In-frame	ENST00000513349	ENST00000310581		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
Frame-shit	ENST00000513349	ENST00000296820		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
In-frame	ENST00000513349	ENST00000334602		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
In-frame	ENST00000513349	ENST00000508104		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000513349	ENST00000522877		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000504361	ENST00000310581		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000504361	ENST00000296820		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000504361	ENST00000334602		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000504361	ENST00000508104		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
intron-intron	ENST00000504361	ENST00000522877		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	DROSHA	chr5	31421379	-	TERT	chr5	1282739	-
3UTR-3CDS	ENST00000378565	ENST00000355666		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-3CDS	ENST00000378565	ENST00000399017		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-3CDS	ENST00000378565	ENST00000354749		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-intron	ENST00000378565	ENST00000479930		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-intron	ENST00000378565	ENST00000540756		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-intron	ENST00000378565	ENST00000399010		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-3CDS	ENST00000378549	ENST00000355666		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-3CDS	ENST00000378549	ENST00000399017		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-3CDS	ENST00000378549	ENST00000354749		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-intron	ENST00000378549	ENST00000479930		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-intron	ENST00000378549	ENST00000540756		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
3UTR-intron	ENST00000378549	ENST00000399010		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	ITM2B	chr13	48835457	+	TTC3	chr21	38466305	+
Frame-shit	ENST00000355666	ENST00000378565		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000355666	ENST00000378549		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000399017	ENST00000378565		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000399017	ENST00000378549		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000354749	ENST00000378565		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000354749	ENST00000378549		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
3UTR-3CDS	ENST00000479930	ENST00000378565		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
3UTR-3CDS	ENST00000479930	ENST00000378549		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
intron-3CDS	ENST00000540756	ENST00000378565		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
intron-3CDS	ENST00000540756	ENST00000378549		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000399010	ENST00000378565		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000399010	ENST00000378549		TCGA	LD	SKCM	TCGA-FW-A5DX-01A	TTC3	chr21	38460175	+	ITM2B	chr13	48827944	+
Frame-shit	ENST00000415912	ENST00000368761		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
Frame-shit	ENST00000415912	ENST00000359831		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
5CDS-5UTR	ENST00000415912	ENST00000392556		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
5CDS-5UTR	ENST00000415912	ENST00000340026		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
5CDS-intron	ENST00000415912	ENST00000368731		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
5CDS-intron	ENST00000415912	ENST00000368735		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000357071	ENST00000368761		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000357071	ENST00000359831		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000357071	ENST00000392556		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000357071	ENST00000340026		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000357071	ENST00000368731		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000357071	ENST00000368735		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000374893	ENST00000368761		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000374893	ENST00000359831		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000374893	ENST00000392556		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000374893	ENST00000340026		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000374893	ENST00000368731		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000374893	ENST00000368735		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000436918	ENST00000368761		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000436918	ENST00000359831		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000436918	ENST00000392556		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000436918	ENST00000340026		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000436918	ENST00000368731		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000436918	ENST00000368735		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000264205	ENST00000368761		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000264205	ENST00000359831		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000264205	ENST00000392556		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000264205	ENST00000340026		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000264205	ENST00000368731		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000264205	ENST00000368735		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000528294	ENST00000368761		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-3CDS	ENST00000528294	ENST00000359831		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000528294	ENST00000392556		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-5UTR	ENST00000528294	ENST00000340026		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000528294	ENST00000368731		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
intron-intron	ENST00000528294	ENST00000368735		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	ECE1	chr1	21671869	-	TRAF3IP2	chr6	111901592	-
Frame-shit	ENST00000367495	ENST00000397944		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	RAB32	chr6	146865257	+	ADGB	chr6	146987952	+
5CDS-5UTR	ENST00000367495	ENST00000367493		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	RAB32	chr6	146865257	+	ADGB	chr6	146987952	+
5CDS-intron	ENST00000367495	ENST00000523560		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	RAB32	chr6	146865257	+	ADGB	chr6	146987952	+
5CDS-intron	ENST00000367495	ENST00000367488		TCGA	LD	SKCM	TCGA-GF-A2C7-01A	RAB32	chr6	146865257	+	ADGB	chr6	146987952	+
Frame-shit	ENST00000300060	ENST00000311852		TCGA	LD	SKCM	TCGA-GF-A3OT-06A	ANPEP	chr15	90333691	-	MMP14	chr14	23313580	+
5CDS-3UTR	ENST00000300060	ENST00000548162		TCGA	LD	SKCM	TCGA-GF-A3OT-06A	ANPEP	chr15	90333691	-	MMP14	chr14	23313580	+
intron-3CDS	ENST00000558177	ENST00000311852		TCGA	LD	SKCM	TCGA-GF-A3OT-06A	ANPEP	chr15	90333691	-	MMP14	chr14	23313580	+
intron-3UTR	ENST00000558177	ENST00000548162		TCGA	LD	SKCM	TCGA-GF-A3OT-06A	ANPEP	chr15	90333691	-	MMP14	chr14	23313580	+
intron-3CDS	ENST00000331238	ENST00000461719		TCGA	LD	SKCM	TCGA-GF-A4EO-06A	RTN4RL1	chr17	1841033	-	IGHJ4	chr14	106330467	-
5UTR-3CDS	ENST00000510594	ENST00000306846		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
5UTR-3CDS	ENST00000510594	ENST00000436644		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
5UTR-5UTR	ENST00000510594	ENST00000338972		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
5UTR-5UTR	ENST00000510594	ENST00000514514		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000334744	ENST00000306846		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000334744	ENST00000436644		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000334744	ENST00000338972		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000334744	ENST00000514514		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000358004	ENST00000306846		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000358004	ENST00000436644		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000358004	ENST00000338972		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000358004	ENST00000514514		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000394450	ENST00000306846		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000394450	ENST00000436644		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000394450	ENST00000338972		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000394450	ENST00000514514		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000505416	ENST00000306846		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-3CDS	ENST00000505416	ENST00000436644		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000505416	ENST00000338972		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
3UTR-5UTR	ENST00000505416	ENST00000514514		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
intron-3CDS	ENST00000511435	ENST00000306846		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
intron-3CDS	ENST00000511435	ENST00000436644		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
intron-5UTR	ENST00000511435	ENST00000338972		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
intron-5UTR	ENST00000511435	ENST00000514514		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	PRELID2	chr5	145144494	-	PAIP1	chr5	43556101	-
Frame-shit	ENST00000261778	ENST00000283882		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	TANGO6	chr16	68877614	+	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000261778	ENST00000564286		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	TANGO6	chr16	68877614	+	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000561931	ENST00000283882		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	TANGO6	chr16	68877614	+	CFDP1	chr16	75339080	-
intron-intron	ENST00000561931	ENST00000564286		TCGA	LD	SKCM	TCGA-GF-A6C8-06A	TANGO6	chr16	68877614	+	CFDP1	chr16	75339080	-
3UTR-5UTR	ENST00000334983	ENST00000476844		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000334983	ENST00000492590		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000334983	ENST00000466788		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000334983	ENST00000468189		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000334983	ENST00000341848		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000349718	ENST00000476844		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000349718	ENST00000492590		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000349718	ENST00000466788		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-5UTR	ENST00000349718	ENST00000468189		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
3UTR-intron	ENST00000349718	ENST00000341848		TCGA	LD	SKCM	TCGA-GF-A6C9-06A	CMTM7	chr3	32496034	+	FHIT	chr3	60522712	-
5UTR-3CDS	ENST00000393593	ENST00000296741		TCGA	LD	SKCM	TCGA-GF-A769-01A	IRF2	chr4	185395533	-	ENPP6	chr4	185074886	-
5UTR-3CDS	ENST00000512020	ENST00000296741		TCGA	LD	SKCM	TCGA-GF-A769-01A	IRF2	chr4	185395533	-	ENPP6	chr4	185074886	-
In-frame	ENST00000256646	ENST00000354219		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
In-frame	ENST00000256646	ENST00000256585		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
In-frame	ENST00000256646	ENST00000530654		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
In-frame	ENST00000256646	ENST00000369401		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000354219		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000256585		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000530654		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000602566	ENST00000369401		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000354219		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000256585		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000530654		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
intron-3CDS	ENST00000493703	ENST00000369401		TCGA	LD	SKCM	TCGA-GN-A264-06A	NOTCH2	chr1	120496166	-	REG4	chr1	120345788	-
In-frame	ENST00000215574	ENST00000264819		TCGA	LD	SKCM	TCGA-GN-A265-06A	CDC34	chr19	532108	+	MIER2	chr19	336173	-
5CDS-5UTR	ENST00000215574	ENST00000592722		TCGA	LD	SKCM	TCGA-GN-A265-06A	CDC34	chr19	532108	+	MIER2	chr19	336173	-
5CDS-5UTR	ENST00000301740	ENST00000573319		TCGA	LD	SKCM	TCGA-GN-A266-06A	SRRM2	chr16	2810500	+	BCAR4	chr16	11915612	-
intron-5UTR	ENST00000574593	ENST00000573319		TCGA	LD	SKCM	TCGA-GN-A266-06A	SRRM2	chr16	2810500	+	BCAR4	chr16	11915612	-
intron-3CDS	ENST00000321288	ENST00000394885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000321288	ENST00000320963		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000321288	ENST00000394883		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000398814	ENST00000394885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000398814	ENST00000320963		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000398814	ENST00000394883		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000563951	ENST00000394885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000563951	ENST00000320963		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000563951	ENST00000394883		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000558821	ENST00000394885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000558821	ENST00000320963		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000558821	ENST00000394883		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000268082	ENST00000394885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000268082	ENST00000320963		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
intron-3CDS	ENST00000268082	ENST00000394883		TCGA	LD	SKCM	TCGA-GN-A26A-06A	CCDC33	chr15	74495439	+	RCN2	chr15	77236099	+
5UTR-3CDS	ENST00000304191	ENST00000268035		TCGA	LD	SKCM	TCGA-GN-A26A-06A	FAM103A1	chr15	83656136	+	IGF1R	chr15	99434554	+
5UTR-3CDS	ENST00000304191	ENST00000558762		TCGA	LD	SKCM	TCGA-GN-A26A-06A	FAM103A1	chr15	83656136	+	IGF1R	chr15	99434554	+
5UTR-3UTR	ENST00000304191	ENST00000560432		TCGA	LD	SKCM	TCGA-GN-A26A-06A	FAM103A1	chr15	83656136	+	IGF1R	chr15	99434554	+
In-frame	ENST00000268097	ENST00000356056		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000268097	ENST00000444904		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000268097	ENST00000424560		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000268097	ENST00000564571		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000268097	ENST00000566885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5CDS-5UTR	ENST00000268097	ENST00000563542		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000566304	ENST00000356056		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000566304	ENST00000444904		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000566304	ENST00000424560		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000566304	ENST00000564571		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000566304	ENST00000566885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5CDS-5UTR	ENST00000566304	ENST00000563542		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000457859	ENST00000356056		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000457859	ENST00000444904		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000457859	ENST00000424560		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000457859	ENST00000564571		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000457859	ENST00000566885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-5UTR	ENST00000457859	ENST00000563542		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000567159	ENST00000356056		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000567159	ENST00000444904		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000567159	ENST00000424560		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000567159	ENST00000564571		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
In-frame	ENST00000567159	ENST00000566885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5CDS-5UTR	ENST00000567159	ENST00000563542		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000429918	ENST00000356056		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000429918	ENST00000444904		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000429918	ENST00000424560		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000429918	ENST00000564571		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000429918	ENST00000566885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-5UTR	ENST00000429918	ENST00000563542		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000567213	ENST00000356056		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000567213	ENST00000444904		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000567213	ENST00000424560		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000567213	ENST00000564571		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-3CDS	ENST00000567213	ENST00000566885		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
5UTR-5UTR	ENST00000567213	ENST00000563542		TCGA	LD	SKCM	TCGA-GN-A26A-06A	HEXA	chr15	72668061	-	MYO9A	chr15	72208833	-
Frame-shit	ENST00000458013	ENST00000361891		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
5CDS-intron	ENST00000458013	ENST00000480213		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
5CDS-intron	ENST00000458013	ENST00000368681		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
Frame-shit	ENST00000368843	ENST00000361891		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
5CDS-intron	ENST00000368843	ENST00000480213		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
5CDS-intron	ENST00000368843	ENST00000368681		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
Frame-shit	ENST00000368838	ENST00000361891		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
5CDS-intron	ENST00000368838	ENST00000480213		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
5CDS-intron	ENST00000368838	ENST00000368681		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
intron-3CDS	ENST00000482791	ENST00000361891		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
intron-intron	ENST00000482791	ENST00000480213		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
intron-intron	ENST00000482791	ENST00000368681		TCGA	LD	SKCM	TCGA-GN-A26A-06A	SNX27	chr1	151665959	+	ILF2	chr1	153642706	-
intron-3CDS	ENST00000486901	ENST00000544301		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
intron-3CDS	ENST00000486901	ENST00000224237		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
intron-intron	ENST00000486901	ENST00000485947		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
In-frame	ENST00000374695	ENST00000544301		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
In-frame	ENST00000374695	ENST00000224237		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
5CDS-intron	ENST00000374695	ENST00000485947		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
intron-3CDS	ENST00000430507	ENST00000544301		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
intron-3CDS	ENST00000430507	ENST00000224237		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
intron-intron	ENST00000430507	ENST00000485947		TCGA	LD	SKCM	TCGA-GN-A26C-01A	HSPG2	chr1	22204679	-	VIM	chr10	17276692	+
5UTR-3CDS	ENST00000496817	ENST00000544301		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
5UTR-3CDS	ENST00000496817	ENST00000224237		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
5UTR-intron	ENST00000496817	ENST00000485947		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
5UTR-3CDS	ENST00000368719	ENST00000544301		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
5UTR-3CDS	ENST00000368719	ENST00000224237		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
5UTR-intron	ENST00000368719	ENST00000485947		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
intron-3CDS	ENST00000368720	ENST00000544301		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
intron-3CDS	ENST00000368720	ENST00000224237		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
intron-intron	ENST00000368720	ENST00000485947		TCGA	LD	SKCM	TCGA-GN-A26C-01A	S100A6	chr1	153508425	-	VIM	chr10	17277168	+
5CDS-intron	ENST00000284268	ENST00000426898		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000284268	ENST00000425752		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000284268	ENST00000423947		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000284268	ENST00000435642		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000284268	ENST00000320560		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000284268	ENST00000441606		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000535119	ENST00000426898		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000535119	ENST00000425752		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000535119	ENST00000423947		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000535119	ENST00000435642		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000535119	ENST00000320560		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000535119	ENST00000441606		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5UTR-intron	ENST00000503939	ENST00000426898		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5UTR-intron	ENST00000503939	ENST00000425752		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5UTR-intron	ENST00000503939	ENST00000423947		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5UTR-intron	ENST00000503939	ENST00000435642		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5UTR-intron	ENST00000503939	ENST00000320560		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
5UTR-intron	ENST00000503939	ENST00000441606		TCGA	LD	SKCM	TCGA-GN-A26D-06A	ANKH	chr5	14741936	-	ANO6	chr12	45695797	+
Frame-shit	ENST00000545606	ENST00000283228		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000545606	ENST00000440835		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000545606	ENST00000537619		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000545606	ENST00000378778		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000545606	ENST00000342084		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
5CDS-intron	ENST00000545606	ENST00000549308		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
intron-3CDS	ENST00000539109	ENST00000283228		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000539109	ENST00000440835		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000539109	ENST00000537619		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000539109	ENST00000378778		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000539109	ENST00000342084		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
intron-intron	ENST00000539109	ENST00000549308		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CAND1	chr12	67675833	+	PTPRR	chr12	71286757	-
5CDS-3UTR	ENST00000229195	ENST00000535684		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CNOT2	chr12	70672054	+	RPS11P6	chr12	64782813	+
5CDS-3UTR	ENST00000418359	ENST00000535684		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CNOT2	chr12	70672054	+	RPS11P6	chr12	64782813	+
intron-3UTR	ENST00000548230	ENST00000535684		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CNOT2	chr12	70672054	+	RPS11P6	chr12	64782813	+
intron-3UTR	ENST00000551483	ENST00000535684		TCGA	LD	SKCM	TCGA-GN-A26D-06A	CNOT2	chr12	70672054	+	RPS11P6	chr12	64782813	+
intron-3CDS	ENST00000416284	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000416284	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-3CDS	ENST00000551619	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551619	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-3CDS	ENST00000550003	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000550003	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-3CDS	ENST00000551449	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
intron-intron	ENST00000551449	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-3CDS	ENST00000549456	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5UTR-intron	ENST00000549456	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	FAM19A2	chr12	62600953	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000416284		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000418919	ENST00000551619		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000418919	ENST00000550003		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000418919	ENST00000551449		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-5UTR	ENST00000418919	ENST00000549456		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000258145	ENST00000416284		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000258145	ENST00000551619		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000258145	ENST00000550003		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000258145	ENST00000551449		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-5UTR	ENST00000258145	ENST00000549456		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000543646	ENST00000416284		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000543646	ENST00000551619		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000543646	ENST00000550003		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000543646	ENST00000551449		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-5UTR	ENST00000543646	ENST00000549456		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000542058	ENST00000416284		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000542058	ENST00000551619		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000542058	ENST00000550003		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-intron	ENST00000542058	ENST00000551449		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
5CDS-5UTR	ENST00000542058	ENST00000549456		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	FAM19A2	chr12	62601031	-
In-frame	ENST00000418919	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000418919	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
In-frame	ENST00000258145	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000258145	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
In-frame	ENST00000543646	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000543646	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
In-frame	ENST00000542058	ENST00000247833		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000378815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000325555		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000483530		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000550536		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000362025		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000551641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000553099		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
5CDS-intron	ENST00000542058	ENST00000550847		TCGA	LD	SKCM	TCGA-GN-A26D-06A	GNS	chr12	65138589	-	RAB3IP	chr12	70206744	+
Frame-shit	ENST00000534064	ENST00000325455		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
Frame-shit	ENST00000534064	ENST00000534013		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
Frame-shit	ENST00000534064	ENST00000263463		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000535943	ENST00000325455		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000535943	ENST00000534013		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000535943	ENST00000263463		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000525931	ENST00000325455		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000525931	ENST00000534013		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000525931	ENST00000263463		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
Frame-shit	ENST00000529807	ENST00000325455		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
Frame-shit	ENST00000529807	ENST00000534013		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
Frame-shit	ENST00000529807	ENST00000263463		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000527522	ENST00000325455		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000527522	ENST00000534013		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
intron-3CDS	ENST00000527522	ENST00000263463		TCGA	LD	SKCM	TCGA-GN-A26D-06A	INTS4	chr11	77666988	-	PGR	chr11	100962607	-
In-frame	ENST00000379141	ENST00000262030		TCGA	LD	SKCM	TCGA-GN-A26D-06A	LRIG3	chr12	59270227	-	ATP5B	chr12	57039137	-
In-frame	ENST00000379141	ENST00000552919		TCGA	LD	SKCM	TCGA-GN-A26D-06A	LRIG3	chr12	59270227	-	ATP5B	chr12	57039137	-
5CDS-intron	ENST00000379141	ENST00000550162		TCGA	LD	SKCM	TCGA-GN-A26D-06A	LRIG3	chr12	59270227	-	ATP5B	chr12	57039137	-
In-frame	ENST00000320743	ENST00000262030		TCGA	LD	SKCM	TCGA-GN-A26D-06A	LRIG3	chr12	59270227	-	ATP5B	chr12	57039137	-
In-frame	ENST00000320743	ENST00000552919		TCGA	LD	SKCM	TCGA-GN-A26D-06A	LRIG3	chr12	59270227	-	ATP5B	chr12	57039137	-
5CDS-intron	ENST00000320743	ENST00000550162		TCGA	LD	SKCM	TCGA-GN-A26D-06A	LRIG3	chr12	59270227	-	ATP5B	chr12	57039137	-
In-frame	ENST00000281031	ENST00000532481		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000527134		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000304716		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000526415		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000531855		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000393427		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000525409		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000533193		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000281031	ENST00000525034		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
In-frame	ENST00000527806	ENST00000532481		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000527134		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000304716		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000526415		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000531855		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000393427		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000525409		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000533193		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000527806	ENST00000525034		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
In-frame	ENST00000534029	ENST00000532481		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000527134		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000304716		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000526415		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000531855		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000393427		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000525409		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000533193		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000534029	ENST00000525034		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
In-frame	ENST00000525085	ENST00000532481		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000527134		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000304716		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000526415		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000531855		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000393427		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000525409		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000533193		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000525085	ENST00000525034		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
In-frame	ENST00000528164	ENST00000532481		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000527134		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000304716		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000526415		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000531855		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000393427		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000525409		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000533193		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5CDS-intron	ENST00000528164	ENST00000525034		TCGA	LD	SKCM	TCGA-GN-A26D-06A	NDUFC2	chr11	77790625	-	AAMDC	chr11	77629107	+
5UTR-3CDS	ENST00000356341	ENST00000524892		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
5UTR-3CDS	ENST00000356341	ENST00000298815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
5UTR-3UTR	ENST00000356341	ENST00000534060		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3CDS	ENST00000530617	ENST00000524892		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3CDS	ENST00000530617	ENST00000298815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3UTR	ENST00000530617	ENST00000534060		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
5UTR-3CDS	ENST00000278568	ENST00000524892		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
5UTR-3CDS	ENST00000278568	ENST00000298815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
5UTR-3UTR	ENST00000278568	ENST00000534060		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3CDS	ENST00000528203	ENST00000524892		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3CDS	ENST00000528203	ENST00000298815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3UTR	ENST00000528203	ENST00000534060		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3CDS	ENST00000525542	ENST00000524892		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3CDS	ENST00000525542	ENST00000298815		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
intron-3UTR	ENST00000525542	ENST00000534060		TCGA	LD	SKCM	TCGA-GN-A26D-06A	PAK1	chr11	77184597	-	ARHGAP42	chr11	100665836	+
In-frame	ENST00000328923	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000328923	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000328923	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000328923	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000328923	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000328923	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000328923	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-3CDS	ENST00000554600	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-3CDS	ENST00000554600	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000554600	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000554600	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000554600	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-5UTR	ENST00000554600	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
intron-intron	ENST00000554600	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000557487	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000557487	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000557487	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000557487	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000557487	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000557487	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000557487	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000414700	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000414700	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000414700	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000414700	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000414700	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000414700	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000414700	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000553474	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000553474	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000553474	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000553474	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000553474	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000553474	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000553474	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000449049	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000449049	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000449049	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000449049	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000449049	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000449049	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000449049	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000393827	ENST00000552432		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000393827	ENST00000547379		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000393827	ENST00000549465		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000393827	ENST00000552024		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000393827	ENST00000261187		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-5UTR	ENST00000393827	ENST00000543448		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
5CDS-intron	ENST00000393827	ENST00000549588		TCGA	LD	SKCM	TCGA-GN-A26D-06A	SHMT2	chr12	57627893	+	SLC16A7	chr12	60165000	+
In-frame	ENST00000550746	ENST00000228641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	TBC1D15	chr12	72266783	+	MYF6	chr12	81101634	+
In-frame	ENST00000319106	ENST00000228641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	TBC1D15	chr12	72266783	+	MYF6	chr12	81101634	+
In-frame	ENST00000485960	ENST00000228641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	TBC1D15	chr12	72266783	+	MYF6	chr12	81101634	+
5UTR-3CDS	ENST00000393309	ENST00000228641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	TBC1D15	chr12	72266783	+	MYF6	chr12	81101634	+
intron-3CDS	ENST00000548679	ENST00000228641		TCGA	LD	SKCM	TCGA-GN-A26D-06A	TBC1D15	chr12	72266783	+	MYF6	chr12	81101634	+
5CDS-5UTR	ENST00000003302	ENST00000355319		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000003302	ENST00000346454		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000003302	ENST00000362072		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000003302	ENST00000544518		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000003302	ENST00000542968		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000003302	ENST00000538967		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000003302	ENST00000535984		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000260188	ENST00000355319		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000260188	ENST00000346454		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000260188	ENST00000362072		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000260188	ENST00000544518		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000260188	ENST00000542968		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000260188	ENST00000538967		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000260188	ENST00000535984		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-5UTR	ENST00000544967	ENST00000355319		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-5UTR	ENST00000544967	ENST00000346454		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-5UTR	ENST00000544967	ENST00000362072		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-5UTR	ENST00000544967	ENST00000544518		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-5UTR	ENST00000544967	ENST00000542968		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-intron	ENST00000544967	ENST00000538967		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
intron-intron	ENST00000544967	ENST00000535984		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000545540	ENST00000355319		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000545540	ENST00000346454		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000545540	ENST00000362072		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000545540	ENST00000544518		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000545540	ENST00000542968		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-intron	ENST00000545540	ENST00000538967		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-intron	ENST00000545540	ENST00000535984		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000537706	ENST00000355319		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000537706	ENST00000346454		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000537706	ENST00000362072		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000537706	ENST00000544518		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-5UTR	ENST00000537706	ENST00000542968		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000537706	ENST00000538967		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000537706	ENST00000535984		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000542033	ENST00000355319		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000542033	ENST00000346454		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000542033	ENST00000362072		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000542033	ENST00000544518		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-5UTR	ENST00000542033	ENST00000542968		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-intron	ENST00000542033	ENST00000538967		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5UTR-intron	ENST00000542033	ENST00000535984		TCGA	LD	SKCM	TCGA-GN-A26D-06A	USP28	chr11	113712385	-	DRD2	chr11	113295404	-
5CDS-intron	ENST00000526343	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000526343	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000526343	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000526343	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000526343	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000282441	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000282441	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000282441	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000282441	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000282441	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000537274	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000537274	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000537274	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000537274	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000537274	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000345877	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000345877	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000345877	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000345877	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000345877	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000531439	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000531439	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000531439	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000531439	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000531439	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000524575	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000524575	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000524575	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000524575	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
5CDS-intron	ENST00000524575	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
3UTR-intron	ENST00000528834	ENST00000393020		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
3UTR-intron	ENST00000528834	ENST00000529221		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
3UTR-intron	ENST00000528834	ENST00000314756		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
3UTR-intron	ENST00000528834	ENST00000483239		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
3UTR-intron	ENST00000528834	ENST00000478125		TCGA	LD	SKCM	TCGA-GN-A26D-06A	YAP1	chr11	102098312	+	TTC12	chr11	113238909	+
In-frame	ENST00000406310	ENST00000328404		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	ESRRA	chr11	64074976	+	TEX40	chr11	64070954	+
In-frame	ENST00000406310	ENST00000539943		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	ESRRA	chr11	64074976	+	TEX40	chr11	64070954	+
In-frame	ENST00000000442	ENST00000328404		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	ESRRA	chr11	64074976	+	TEX40	chr11	64070954	+
In-frame	ENST00000000442	ENST00000539943		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	ESRRA	chr11	64074976	+	TEX40	chr11	64070954	+
In-frame	ENST00000405666	ENST00000328404		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	ESRRA	chr11	64074976	+	TEX40	chr11	64070954	+
In-frame	ENST00000405666	ENST00000539943		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	ESRRA	chr11	64074976	+	TEX40	chr11	64070954	+
intron-3UTR	ENST00000263681	ENST00000534836		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000263681	ENST00000541045		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000263681	ENST00000536908		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000263681	ENST00000378738		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000263681	ENST00000394832		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000263681	ENST00000320856		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000263681	ENST00000394835		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-3UTR	ENST00000527458	ENST00000534836		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000527458	ENST00000541045		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000527458	ENST00000536908		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000527458	ENST00000378738		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000527458	ENST00000394832		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000527458	ENST00000320856		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000527458	ENST00000394835		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-3UTR	ENST00000532497	ENST00000534836		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000532497	ENST00000541045		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000532497	ENST00000536908		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532497	ENST00000378738		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532497	ENST00000394832		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532497	ENST00000320856		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532497	ENST00000394835		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-3UTR	ENST00000532784	ENST00000534836		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000532784	ENST00000541045		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-5UTR	ENST00000532784	ENST00000536908		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532784	ENST00000378738		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532784	ENST00000394832		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532784	ENST00000320856		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
intron-intron	ENST00000532784	ENST00000394835		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	POLD3	chr11	74346024	+	EFCAB5	chr17	28256956	+
3UTR-5UTR	ENST00000324685	ENST00000330048		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	RNF40	chr16	30785572	+	SLC6A10P	chr16	32890646	-
3UTR-5UTR	ENST00000402121	ENST00000330048		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	RNF40	chr16	30785572	+	SLC6A10P	chr16	32890646	-
3UTR-5UTR	ENST00000563683	ENST00000330048		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	RNF40	chr16	30785572	+	SLC6A10P	chr16	32890646	-
3UTR-5UTR	ENST00000357890	ENST00000330048		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	RNF40	chr16	30785572	+	SLC6A10P	chr16	32890646	-
intron-5UTR	ENST00000567365	ENST00000330048		TCGA	LD	SKCM	TCGA-GN-A4U3-06A	RNF40	chr16	30785572	+	SLC6A10P	chr16	32890646	-
In-frame	ENST00000263119	ENST00000215780		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
In-frame	ENST00000263119	ENST00000402588		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
In-frame	ENST00000405822	ENST00000215780		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
In-frame	ENST00000405822	ENST00000402588		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
In-frame	ENST00000398319	ENST00000215780		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
In-frame	ENST00000398319	ENST00000402588		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
intron-3CDS	ENST00000337989	ENST00000215780		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
intron-3CDS	ENST00000337989	ENST00000402588		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
intron-3CDS	ENST00000485008	ENST00000215780		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
intron-3CDS	ENST00000485008	ENST00000402588		TCGA	LD	SKCM	TCGA-GN-A4U4-06A	CABIN1	chr22	24509715	+	GSTT2	chr22	24323139	+
5CDS-5UTR	ENST00000318217	ENST00000219162		TCGA	LD	SKCM	TCGA-GN-A8LK-06A	MYO1D	chr17	30932105	-	MT4	chr16	56599005	+
5CDS-5UTR	ENST00000394649	ENST00000219162		TCGA	LD	SKCM	TCGA-GN-A8LK-06A	MYO1D	chr17	30932105	-	MT4	chr16	56599005	+
5CDS-5UTR	ENST00000579584	ENST00000219162		TCGA	LD	SKCM	TCGA-GN-A8LK-06A	MYO1D	chr17	30932105	-	MT4	chr16	56599005	+
intron-5UTR	ENST00000584232	ENST00000219162		TCGA	LD	SKCM	TCGA-GN-A8LK-06A	MYO1D	chr17	30932105	-	MT4	chr16	56599005	+
intron-5UTR	ENST00000583621	ENST00000219162		TCGA	LD	SKCM	TCGA-GN-A8LK-06A	MYO1D	chr17	30932105	-	MT4	chr16	56599005	+
3UTR-5UTR	ENST00000461862	ENST00000326956		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
3UTR-5UTR	ENST00000461862	ENST00000417664		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
3UTR-5UTR	ENST00000461862	ENST00000371320		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
3UTR-5UTR	ENST00000461862	ENST00000371319		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
3UTR-5UTR	ENST00000461862	ENST00000357475		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
5CDS-5UTR	ENST00000368905	ENST00000326956		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
5CDS-5UTR	ENST00000368905	ENST00000417664		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
5CDS-5UTR	ENST00000368905	ENST00000371320		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
5CDS-5UTR	ENST00000368905	ENST00000371319		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
5CDS-5UTR	ENST00000368905	ENST00000357475		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SCNM1	chr1	151138679	+	SSBP3	chr1	54717533	-
5CDS-5UTR	ENST00000533603	ENST00000409709		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000533603	ENST00000409893		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000533603	ENST00000458637		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000533603	ENST00000409619		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-intron	ENST00000533603	ENST00000605744		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000358171	ENST00000409709		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000358171	ENST00000409893		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000358171	ENST00000458637		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000358171	ENST00000409619		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-intron	ENST00000358171	ENST00000605744		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000530284	ENST00000409709		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000530284	ENST00000409893		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000530284	ENST00000458637		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000530284	ENST00000409619		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-intron	ENST00000530284	ENST00000605744		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000524558	ENST00000409709		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000524558	ENST00000409893		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000524558	ENST00000458637		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-5UTR	ENST00000524558	ENST00000409619		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
5CDS-intron	ENST00000524558	ENST00000605744		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525876	ENST00000409709		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525876	ENST00000409893		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525876	ENST00000458637		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
intron-5UTR	ENST00000525876	ENST00000409619		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
intron-intron	ENST00000525876	ENST00000605744		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	SERPINH1	chr11	75278016	+	MYO7A	chr11	76841635	+
Frame-shit	ENST00000401886	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000447208	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000398042	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000432883	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000327374	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
3UTR-3CDS	ENST00000479679	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000401833	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000434570	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
5UTR-3CDS	ENST00000420290	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
Frame-shit	ENST00000456048	ENST00000215794		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TANGO2	chr22	20030966	+	USP18	chr22	18659539	+
In-frame	ENST00000406386	ENST00000310653		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000406386	ENST00000336083		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000406386	ENST00000536566		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000406386	ENST00000541588		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
intron-3CDS	ENST00000407319	ENST00000310653		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
intron-3CDS	ENST00000407319	ENST00000336083		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
intron-3CDS	ENST00000407319	ENST00000536566		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
intron-3CDS	ENST00000407319	ENST00000541588		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000403663	ENST00000310653		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000403663	ENST00000336083		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000403663	ENST00000536566		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
In-frame	ENST00000403663	ENST00000541588		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	TRIOBP	chr22	38165382	+	RAB6A	chr11	73431944	-
intron-3CDS	ENST00000594022	ENST00000334126		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-3CDS	ENST00000594022	ENST00000313663		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000594022	ENST00000542452		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000594022	ENST00000539061		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-3CDS	ENST00000358491	ENST00000334126		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-3CDS	ENST00000358491	ENST00000313663		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000358491	ENST00000542452		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000358491	ENST00000539061		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-3CDS	ENST00000597078	ENST00000334126		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-3CDS	ENST00000597078	ENST00000313663		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000597078	ENST00000542452		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
intron-intron	ENST00000597078	ENST00000539061		TCGA	LD	SKCM	TCGA-GN-A8LL-06A	ZNF429	chr19	21688882	+	C2CD3	chr11	73809300	-
5UTR-intron	ENST00000355630	ENST00000467129		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000355630	ENST00000381808		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000355630	ENST00000381812		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000355630	ENST00000339987		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000355630	ENST00000360779		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000396617	ENST00000467129		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000396617	ENST00000381808		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000396617	ENST00000381812		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000396617	ENST00000339987		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000396617	ENST00000360779		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000402042	ENST00000467129		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000402042	ENST00000381808		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000402042	ENST00000381812		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000402042	ENST00000339987		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000402042	ENST00000360779		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000466278	ENST00000467129		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-intron	ENST00000466278	ENST00000381808		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000466278	ENST00000381812		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000466278	ENST00000339987		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5UTR-5UTR	ENST00000466278	ENST00000360779		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000407029	ENST00000467129		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000407029	ENST00000381808		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000407029	ENST00000381812		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000407029	ENST00000339987		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000407029	ENST00000360779		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000402630	ENST00000467129		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-intron	ENST00000402630	ENST00000381808		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000402630	ENST00000381812		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000402630	ENST00000339987		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
intron-5UTR	ENST00000402630	ENST00000360779		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	MKL1	chr22	41032482	-	SDCBP2	chr20	1301079	-
5CDS-3UTR	ENST00000414786	ENST00000395738		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-3UTR	ENST00000414786	ENST00000362068		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-intron	ENST00000414786	ENST00000395737		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-3UTR	ENST00000445220	ENST00000395738		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-3UTR	ENST00000445220	ENST00000362068		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-intron	ENST00000445220	ENST00000395737		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-3UTR	ENST00000262795	ENST00000395738		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-3UTR	ENST00000262795	ENST00000362068		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
5CDS-intron	ENST00000262795	ENST00000395737		TCGA	LD	SKCM	TCGA-GN-A8LN-01A	SHANK3	chr22	51160865	+	ADM2	chr22	50924699	+
intron-3CDS	ENST00000349714	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000349714	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000349714	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000349714	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000349714	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-intron	ENST00000349714	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000359226	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000359226	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000359226	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000359226	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000359226	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-intron	ENST00000359226	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000374384	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000374384	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000374384	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000374384	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000374384	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-intron	ENST00000374384	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000374380	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000374380	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000374380	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000374380	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000374380	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-intron	ENST00000374380	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000374385	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000374385	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000374385	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000374385	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000374385	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-intron	ENST00000374385	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000374377	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000374377	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000374377	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000374377	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000374377	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-intron	ENST00000374377	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000397556	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000397556	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000397556	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000397556	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000397556	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-intron	ENST00000397556	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000407996	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000407996	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000407996	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000407996	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000407996	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-intron	ENST00000407996	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000540457	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000540457	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000540457	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000540457	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-5UTR	ENST00000540457	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-intron	ENST00000540457	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000542501	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000542501	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000542501	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000542501	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000542501	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-intron	ENST00000542501	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000397554	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000397554	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
In-frame	ENST00000397554	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000397554	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-5UTR	ENST00000397554	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5CDS-intron	ENST00000397554	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5UTR-3CDS	ENST00000491125	ENST00000253363		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5UTR-3CDS	ENST00000491125	ENST00000361162		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5UTR-3CDS	ENST00000491125	ENST00000528062		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5UTR-5UTR	ENST00000491125	ENST00000407261		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5UTR-5UTR	ENST00000491125	ENST00000397370		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
5UTR-intron	ENST00000491125	ENST00000463098		TCGA	LD	SKCM	TCGA-LH-A9QB-06A	UQCC1	chr20	33969721	-	RBM39	chr20	34326939	-
intron-3CDS	ENST00000607334	ENST00000355854		TCGA	LD	SKCM	TCGA-OD-A75X-06A	DLEU2	chr13	50699438	-	CAB39L	chr13	49918374	-
intron-3CDS	ENST00000607334	ENST00000347776		TCGA	LD	SKCM	TCGA-OD-A75X-06A	DLEU2	chr13	50699438	-	CAB39L	chr13	49918374	-
intron-3CDS	ENST00000607334	ENST00000409308		TCGA	LD	SKCM	TCGA-OD-A75X-06A	DLEU2	chr13	50699438	-	CAB39L	chr13	49918374	-
intron-3CDS	ENST00000607334	ENST00000410043		TCGA	LD	SKCM	TCGA-OD-A75X-06A	DLEU2	chr13	50699438	-	CAB39L	chr13	49918374	-
intron-3CDS	ENST00000607334	ENST00000409130		TCGA	LD	SKCM	TCGA-OD-A75X-06A	DLEU2	chr13	50699438	-	CAB39L	chr13	49918374	-
intron-intron	ENST00000607334	ENST00000476943		TCGA	LD	SKCM	TCGA-OD-A75X-06A	DLEU2	chr13	50699438	-	CAB39L	chr13	49918374	-
5UTR-5UTR	ENST00000373242	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373242	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373242	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373242	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373242	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373242	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373238	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373238	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373238	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373238	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373238	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373238	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373241	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373241	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373241	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373241	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373241	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000373241	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000431664	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000431664	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000431664	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000431664	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000431664	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000431664	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000458634	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000458634	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000458634	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000458634	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000458634	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
5UTR-5UTR	ENST00000458634	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373236	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373236	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373236	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373236	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373236	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000373236	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000477464	ENST00000443950		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000477464	ENST00000544000		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000477464	ENST00000357065		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000477464	ENST00000356053		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000477464	ENST00000337970		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-5UTR	ENST00000477464	ENST00000498176		TCGA	LD	SKCM	TCGA-OD-A75X-06A	SAR1A	chr10	71930169	-	HNRNPF	chr10	43892038	-
intron-3CDS	ENST00000546097	ENST00000367474		TCGA	LD	SKCM	TCGA-OD-A75X-06A	STXBP5	chr6	147637543	+	SAMD5	chr6	147885530	+
Frame-shit	ENST00000367481	ENST00000367474		TCGA	LD	SKCM	TCGA-OD-A75X-06A	STXBP5	chr6	147637543	+	SAMD5	chr6	147885530	+
Frame-shit	ENST00000367480	ENST00000367474		TCGA	LD	SKCM	TCGA-OD-A75X-06A	STXBP5	chr6	147637543	+	SAMD5	chr6	147885530	+
Frame-shit	ENST00000321680	ENST00000367474		TCGA	LD	SKCM	TCGA-OD-A75X-06A	STXBP5	chr6	147637543	+	SAMD5	chr6	147885530	+
Frame-shit	ENST00000179882	ENST00000367474		TCGA	LD	SKCM	TCGA-OD-A75X-06A	STXBP5	chr6	147637543	+	SAMD5	chr6	147885530	+
Frame-shit	ENST00000544604	ENST00000216181		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
5CDS-intron	ENST00000544604	ENST00000475726		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
5CDS-intron	ENST00000544604	ENST00000401701		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
5UTR-3CDS	ENST00000332811	ENST00000216181		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
5UTR-intron	ENST00000332811	ENST00000475726		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
5UTR-intron	ENST00000332811	ENST00000401701		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
intron-3CDS	ENST00000402174	ENST00000216181		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
intron-intron	ENST00000402174	ENST00000475726		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
intron-intron	ENST00000402174	ENST00000401701		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
intron-3CDS	ENST00000406323	ENST00000216181		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
intron-intron	ENST00000406323	ENST00000475726		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
intron-intron	ENST00000406323	ENST00000401701		TCGA	LD	SKCM	TCGA-OD-A75X-06A	ZNRF3	chr22	29280054	+	MYH9	chr22	36693060	-
Frame-shit	ENST00000380249	ENST00000433700		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000380249	ENST00000443698		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000380249	ENST00000380062		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000380249	ENST00000429045		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000338382	ENST00000433700		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000338382	ENST00000443698		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000338382	ENST00000380062		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000338382	ENST00000429045		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000605086	ENST00000433700		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000605086	ENST00000443698		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000605086	ENST00000380062		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
Frame-shit	ENST00000605086	ENST00000429045		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
intron-3CDS	ENST00000604828	ENST00000433700		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
intron-3CDS	ENST00000604828	ENST00000443698		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
intron-3CDS	ENST00000604828	ENST00000380062		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
intron-3CDS	ENST00000604828	ENST00000429045		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	FOCAD	chr9	20823114	+	IFT74	chr9	27009018	+
intron-intron	ENST00000356205	ENST00000468311		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000356205	ENST00000368010		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000368623	ENST00000468311		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000368623	ENST00000368010		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000368621	ENST00000468311		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000368621	ENST00000368010		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
5UTR-intron	ENST00000310483	ENST00000468311		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
5UTR-intron	ENST00000310483	ENST00000368010		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000537590	ENST00000468311		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000537590	ENST00000368010		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000461071	ENST00000468311		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
intron-intron	ENST00000461071	ENST00000368010		TCGA	LD	SKCM	TCGA-QB-AA9O-06A	SLC39A1	chr1	153939862	-	PFDN2	chr1	161072165	-
Frame-shit	ENST00000380749	ENST00000345496		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000380749	ENST00000477954		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000380749	ENST00000330942		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
In-frame	ENST00000361263	ENST00000345496		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000361263	ENST00000477954		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000361263	ENST00000330942		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
Frame-shit	ENST00000380748	ENST00000345496		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000380748	ENST00000477954		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000380748	ENST00000330942		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5UTR-3CDS	ENST00000489072	ENST00000345496		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5UTR-5UTR	ENST00000489072	ENST00000477954		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5UTR-5UTR	ENST00000489072	ENST00000330942		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
Frame-shit	ENST00000380747	ENST00000345496		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000380747	ENST00000477954		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
5CDS-5UTR	ENST00000380747	ENST00000330942		TCGA	LD	SKCM	TCGA-RP-A693-06A	HMGN1	chr21	40717072	-	UBE2G2	chr21	46197332	-
Frame-shit	ENST00000416488	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000416488	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000416488	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000416488	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000416488	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000416488	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000416488	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536435	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536435	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536435	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536435	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536435	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536435	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000228289	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000228289	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000228289	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000228289	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000228289	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000228289	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541211	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541211	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541211	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541211	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541211	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541211	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000539248	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000539248	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000539248	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000539248	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000539248	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000539248	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542711	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542711	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542711	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542711	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542711	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542711	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-3CDS	ENST00000537565	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-intron	ENST00000537565	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-intron	ENST00000537565	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-intron	ENST00000537565	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-intron	ENST00000537565	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5UTR-intron	ENST00000537565	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000536899	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536899	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536899	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536899	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536899	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000536899	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000542986	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542986	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542986	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542986	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542986	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000542986	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000541009	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541009	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541009	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541009	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541009	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000541009	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000377110		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000377111		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000377105		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000377106		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000360823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000357533		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000396285		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000358082		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000396292		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000408909		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000396280		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
Frame-shit	ENST00000592241	ENST00000423814		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000592241	ENST00000377101		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000592241	ENST00000396283		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000592241	ENST00000361823		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000592241	ENST00000377097		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000592241	ENST00000437699		TCGA	LD	SKCM	TCGA-RP-A694-06A	ZNF268	chr12	133758616	+	TRPM3	chr9	73255576	-
5CDS-intron	ENST00000324856	ENST00000508736		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000324856	ENST00000548825		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000324856	ENST00000261897		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000324856	ENST00000380281		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000457599	ENST00000508736		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000457599	ENST00000548825		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000457599	ENST00000261897		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000457599	ENST00000380281		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000374152	ENST00000508736		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000374152	ENST00000548825		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000374152	ENST00000261897		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5CDS-intron	ENST00000374152	ENST00000380281		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
intron-intron	ENST00000540690	ENST00000508736		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
intron-intron	ENST00000540690	ENST00000548825		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
intron-intron	ENST00000540690	ENST00000261897		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
intron-intron	ENST00000540690	ENST00000380281		TCGA	LD	SKCM	TCGA-RP-A695-06A	ARID1A	chr1	27059283	+	PRPF40B	chr12	49977345	+
5UTR-3CDS	ENST00000561603	ENST00000318074		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
5UTR-3CDS	ENST00000561603	ENST00000543823		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
5UTR-intron	ENST00000561603	ENST00000490170		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
5UTR-3CDS	ENST00000304330	ENST00000318074		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
5UTR-3CDS	ENST00000304330	ENST00000543823		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
5UTR-intron	ENST00000304330	ENST00000490170		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
intron-3CDS	ENST00000568413	ENST00000318074		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
intron-3CDS	ENST00000568413	ENST00000543823		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
intron-intron	ENST00000568413	ENST00000490170		TCGA	LD	SKCM	TCGA-RP-A695-06A	RPAP1	chr15	41836417	-	SYTL1	chr1	27673912	+
In-frame	ENST00000366844	ENST00000366510		TCGA	LD	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246921528	+
In-frame	ENST00000366843	ENST00000366510		TCGA	LD	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246921528	+
In-frame	ENST00000284563	ENST00000366510		TCGA	LD	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246921528	+
intron-3CDS	ENST00000391874	ENST00000366510		TCGA	LD	SKCM	TCGA-W3-A824-06A	ENAH	chr1	225840388	-	SCCPDH	chr1	246921528	+
5CDS-5UTR	ENST00000528416	ENST00000376511		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000528416	ENST00000484449		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000420949		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000549281		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000468706		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000449113		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000547333		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000475926		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000426299		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000551493		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000494003		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000383586		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000548899		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000478528		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000424446		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000552146		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000488513		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000429597		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000549865		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000528416	ENST00000482076		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000415073	ENST00000376511		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000415073	ENST00000484449		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000420949		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000549281		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000468706		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000449113		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000547333		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000475926		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000426299		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000551493		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000494003		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000383586		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000548899		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000478528		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000424446		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000552146		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000488513		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000429597		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000549865		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000415073	ENST00000482076		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000252268	ENST00000376511		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-5UTR	ENST00000252268	ENST00000484449		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000420949		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000549281		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000468706		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000449113		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000547333		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000475926		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000426299		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000551493		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000494003		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000383586		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000548899		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000478528		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000424446		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000552146		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000488513		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000429597		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000549865		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
5CDS-intron	ENST00000252268	ENST00000482076		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-5UTR	ENST00000532264	ENST00000376511		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-5UTR	ENST00000532264	ENST00000484449		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000420949		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000549281		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000468706		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000449113		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000547333		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000475926		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000426299		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000551493		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000494003		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000383586		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000548899		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000478528		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000424446		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000552146		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000488513		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000429597		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000549865		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
3UTR-intron	ENST00000532264	ENST00000482076		TCGA	LD	SKCM	TCGA-W3-A825-06A	DPF2	chr11	65101389	+	PPP1R10	chr6	30577732	-
intron-intron	ENST00000504604	ENST00000264808		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000504604	ENST00000428209		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000504604	ENST00000515109		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000504604	ENST00000506065		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000504604	ENST00000394435		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000264431	ENST00000264808		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000264431	ENST00000428209		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000264431	ENST00000515109		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000264431	ENST00000506065		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-intron	ENST00000264431	ENST00000394435		TCGA	LD	SKCM	TCGA-W3-A825-06A	RAPGEF2	chr4	160114408	+	PRDM5	chr4	121606180	-
intron-3CDS	ENST00000264674	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000264674	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000392736	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000392736	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000464456	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000464456	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000472280	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000472280	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
In-frame	ENST00000494292	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
In-frame	ENST00000494292	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000468789	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000468789	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000460814	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000460814	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000433243	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
intron-3CDS	ENST00000433243	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
5UTR-3CDS	ENST00000485957	ENST00000470487		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
5UTR-3CDS	ENST00000485957	ENST00000309027		TCGA	LD	SKCM	TCGA-W3-A828-06A	MECOM	chr3	169098975	-	GOLIM4	chr3	167728611	-
In-frame	ENST00000359486	ENST00000215980		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000359486	ENST00000404067		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000359486	ENST00000402338		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000359486	ENST00000407253		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000359486	ENST00000402420		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-intron	ENST00000359486	ENST00000472374		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
In-frame	ENST00000335626	ENST00000215980		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000335626	ENST00000404067		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000335626	ENST00000402338		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000335626	ENST00000407253		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000335626	ENST00000402420		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-intron	ENST00000335626	ENST00000472374		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
In-frame	ENST00000404876	ENST00000215980		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000404876	ENST00000404067		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000404876	ENST00000402338		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000404876	ENST00000407253		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000404876	ENST00000402420		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-intron	ENST00000404876	ENST00000472374		TCGA	LD	SKCM	TCGA-W3-A828-06A	TCF20	chr22	42605657	-	CENPM	chr22	42342500	-
5CDS-5UTR	ENST00000343813	ENST00000478423		TCGA	LD	SKCM	TCGA-W3-AA1O-06A	ICMT	chr1	6294946	-	NPHP4	chr1	6029319	-
5CDS-5UTR	ENST00000343813	ENST00000378156		TCGA	LD	SKCM	TCGA-W3-AA1O-06A	ICMT	chr1	6294946	-	NPHP4	chr1	6029319	-
intron-5UTR	ENST00000495791	ENST00000478423		TCGA	LD	SKCM	TCGA-W3-AA1O-06A	ICMT	chr1	6294946	-	NPHP4	chr1	6029319	-
intron-5UTR	ENST00000495791	ENST00000378156		TCGA	LD	SKCM	TCGA-W3-AA1O-06A	ICMT	chr1	6294946	-	NPHP4	chr1	6029319	-
5CDS-5UTR	ENST00000362035	ENST00000478423		TCGA	LD	SKCM	TCGA-W3-AA1O-06A	ICMT	chr1	6294946	-	NPHP4	chr1	6029319	-
5CDS-5UTR	ENST00000362035	ENST00000378156		TCGA	LD	SKCM	TCGA-W3-AA1O-06A	ICMT	chr1	6294946	-	NPHP4	chr1	6029319	-
Frame-shit	ENST00000296255	ENST00000311856		TCGA	LD	SKCM	TCGA-W3-AA1R-06A	RPN1	chr3	128348794	-	SLC22A13	chr3	38307485	+
Frame-shit	ENST00000296255	ENST00000450935		TCGA	LD	SKCM	TCGA-W3-AA1R-06A	RPN1	chr3	128348794	-	SLC22A13	chr3	38307485	+
Frame-shit	ENST00000497289	ENST00000311856		TCGA	LD	SKCM	TCGA-W3-AA1R-06A	RPN1	chr3	128348794	-	SLC22A13	chr3	38307485	+
In-frame	ENST00000497289	ENST00000450935		TCGA	LD	SKCM	TCGA-W3-AA1R-06A	RPN1	chr3	128348794	-	SLC22A13	chr3	38307485	+
intron-3CDS	ENST00000490166	ENST00000311856		TCGA	LD	SKCM	TCGA-W3-AA1R-06A	RPN1	chr3	128348794	-	SLC22A13	chr3	38307485	+
intron-3CDS	ENST00000490166	ENST00000450935		TCGA	LD	SKCM	TCGA-W3-AA1R-06A	RPN1	chr3	128348794	-	SLC22A13	chr3	38307485	+
3UTR-3CDS	ENST00000252593	ENST00000442725		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
3UTR-3CDS	ENST00000252593	ENST00000252595		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
3UTR-5UTR	ENST00000252593	ENST00000598424		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
3UTR-intron	ENST00000252593	ENST00000598848		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
intron-3CDS	ENST00000527220	ENST00000442725		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
intron-3CDS	ENST00000527220	ENST00000252595		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
intron-5UTR	ENST00000527220	ENST00000598424		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
intron-intron	ENST00000527220	ENST00000598848		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	BST2	chr19	17514489	-	SLC27A1	chr19	17597372	+
Frame-shit	ENST00000310614	ENST00000337018		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000310614	ENST00000452918		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000310614	ENST00000601879		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000310614	ENST00000600377		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000310614	ENST00000456085		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5CDS-intron	ENST00000310614	ENST00000598202		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000535529	ENST00000337018		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000535529	ENST00000452918		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000535529	ENST00000601879		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000535529	ENST00000600377		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000535529	ENST00000456085		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-intron	ENST00000535529	ENST00000598202		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000411840	ENST00000337018		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000411840	ENST00000452918		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000411840	ENST00000601879		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000411840	ENST00000600377		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000411840	ENST00000456085		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-intron	ENST00000411840	ENST00000598202		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398483	ENST00000337018		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398483	ENST00000452918		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398483	ENST00000601879		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398483	ENST00000600377		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398483	ENST00000456085		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-intron	ENST00000398483	ENST00000598202		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000542303	ENST00000337018		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000542303	ENST00000452918		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000542303	ENST00000601879		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000542303	ENST00000600377		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000542303	ENST00000456085		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5CDS-intron	ENST00000542303	ENST00000598202		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000314282	ENST00000337018		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000314282	ENST00000452918		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000314282	ENST00000601879		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000314282	ENST00000600377		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000314282	ENST00000456085		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
intron-intron	ENST00000314282	ENST00000598202		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	MRPL48	chr11	73519395	+	SUGP2	chr19	19121151	-
5UTR-5UTR	ENST00000405876	ENST00000310903		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
5UTR-intron	ENST00000405876	ENST00000431443		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
5UTR-intron	ENST00000405876	ENST00000542883		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
intron-5UTR	ENST00000312777	ENST00000310903		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
intron-intron	ENST00000312777	ENST00000431443		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
intron-intron	ENST00000312777	ENST00000542883		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
intron-5UTR	ENST00000550780	ENST00000310903		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
intron-intron	ENST00000550780	ENST00000431443		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
intron-intron	ENST00000550780	ENST00000542883		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	TCHP	chr12	110338231	+	MYO1H	chr12	109826488	+
Frame-shit	ENST00000263795	ENST00000299518		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
In-frame	ENST00000263795	ENST00000558554		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
Frame-shit	ENST00000263795	ENST00000559205		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
Frame-shit	ENST00000263795	ENST00000441490		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
5CDS-3UTR	ENST00000263795	ENST00000558535		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
5CDS-intron	ENST00000263795	ENST00000561366		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
Frame-shit	ENST00000381246	ENST00000299518		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
In-frame	ENST00000381246	ENST00000558554		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
Frame-shit	ENST00000381246	ENST00000559205		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
Frame-shit	ENST00000381246	ENST00000441490		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
5CDS-3UTR	ENST00000381246	ENST00000558535		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
5CDS-intron	ENST00000381246	ENST00000561366		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
intron-3CDS	ENST00000478130	ENST00000299518		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
intron-3CDS	ENST00000478130	ENST00000558554		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
intron-3CDS	ENST00000478130	ENST00000559205		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
intron-3CDS	ENST00000478130	ENST00000441490		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
intron-3UTR	ENST00000478130	ENST00000558535		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
intron-intron	ENST00000478130	ENST00000561366		TCGA	LD	SKCM	TCGA-WE-A8K1-06A	WDR76	chr15	44120564	+	IDH3A	chr15	78461264	+
5CDS-intron	ENST00000371477	ENST00000514921		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000274897		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000370877		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000509997		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000370876		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000511744		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000358276		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
5CDS-intron	ENST00000371477	ENST00000502396		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDC5L	chr6	44397647	+	MLIP	chr6	54122106	+
Frame-shit	ENST00000266970	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000266970	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000266970	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
Frame-shit	ENST00000553376	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000553376	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000553376	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
Frame-shit	ENST00000440311	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000440311	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000440311	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
Frame-shit	ENST00000354056	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000354056	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
5CDS-intron	ENST00000354056	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
3UTR-3CDS	ENST00000556656	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
3UTR-intron	ENST00000556656	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
3UTR-intron	ENST00000556656	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	CDK2	chr12	56365031	+	ALK	chr2	29448431	-
intron-3CDS	ENST00000553116	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
intron-intron	ENST00000553116	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
intron-intron	ENST00000553116	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
5UTR-3CDS	ENST00000360299	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
5UTR-intron	ENST00000360299	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
5UTR-intron	ENST00000360299	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
5UTR-3CDS	ENST00000448789	ENST00000389048		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
5UTR-intron	ENST00000448789	ENST00000431873		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
5UTR-intron	ENST00000448789	ENST00000498037		TCGA	LD	SKCM	TCGA-WE-A8K4-01A	RAB5B	chr12	56367923	+	ALK	chr2	29449891	-
intron-3CDS	ENST00000574590	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000574590	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000574590	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000575318	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000575318	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000575318	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000572904	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000572904	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000572904	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000262419	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000262419	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000262419	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000432791	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000432791	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000432791	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000393476	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000393476	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000393476	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000576248	ENST00000355653		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000576248	ENST00000587173		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
intron-3CDS	ENST00000576248	ENST00000420567		TCGA	LD	SKCM	TCGA-WE-A8K5-06A	KANSL1	chr17	44246897	-	VAT1	chr17	41168565	-
5UTR-3CDS	ENST00000450751	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-intron	ENST00000450751	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-intron	ENST00000450751	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-3UTR	ENST00000450751	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000563800	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000563800	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000563800	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000563800	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000398591	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000398591	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000398591	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000398591	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000562019	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000562019	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000562019	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000562019	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000423133	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000423133	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000423133	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000423133	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000568128	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000568128	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000568128	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000568128	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000564522	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000564522	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000564522	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000564522	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000261723	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000261723	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000261723	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000261723	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-3CDS	ENST00000568757	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-intron	ENST00000568757	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-intron	ENST00000568757	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
5UTR-3UTR	ENST00000568757	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000398592	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000398592	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000398592	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000398592	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3CDS	ENST00000563519	ENST00000420329		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000563519	ENST00000560098		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-intron	ENST00000563519	ENST00000268184		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
intron-3UTR	ENST00000563519	ENST00000558619		TCGA	LD	SKCM	TCGA-WE-A8ZM-06A	CPEB1	chr15	83315888	-	CRTC3	chr15	91147617	+
In-frame	ENST00000448083	ENST00000263846		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000448083	ENST00000540677		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000448083	ENST00000539008		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000448083	ENST00000542836		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000448083	ENST00000542670		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000448083	ENST00000535826		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
5CDS-5UTR	ENST00000448083	ENST00000540831		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000312562	ENST00000263846		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000312562	ENST00000540677		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000312562	ENST00000539008		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000312562	ENST00000542836		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000312562	ENST00000542670		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000312562	ENST00000535826		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
5CDS-5UTR	ENST00000312562	ENST00000540831		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000531493	ENST00000263846		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000531493	ENST00000540677		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000531493	ENST00000539008		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000531493	ENST00000542836		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000531493	ENST00000542670		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000531493	ENST00000535826		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
5CDS-5UTR	ENST00000531493	ENST00000540831		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000532401	ENST00000263846		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000532401	ENST00000540677		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000532401	ENST00000539008		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000532401	ENST00000542836		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000532401	ENST00000542670		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
In-frame	ENST00000532401	ENST00000535826		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
5CDS-5UTR	ENST00000532401	ENST00000540831		TCGA	LD	SKCM	TCGA-WE-A8ZN-06A	FOSL1	chr11	65667712	-	SYT7	chr11	61295657	-
5CDS-5UTR	ENST00000425019	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000425019	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000425019	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000425019	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000425019	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000425019	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000425019	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000324219	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350198	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000302217	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000413150	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000347699	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000456652	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
5CDS-5UTR	ENST00000350878	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000424272		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000409929		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000409589		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000409329		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000409288		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000410023		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-5UTR	ENST00000498066	ENST00000233946		TCGA	LD	SKCM	TCGA-WE-A8ZO-06A	MAP4K4	chr2	102493608	+	IL1R1	chr2	102770401	+
intron-3CDS	ENST00000570884	ENST00000561924		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
intron-3CDS	ENST00000570884	ENST00000290858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
intron-3CDS	ENST00000570884	ENST00000412916		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
intron-intron	ENST00000570884	ENST00000568858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000570495	ENST00000561924		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000570495	ENST00000290858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000570495	ENST00000412916		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
5CDS-intron	ENST00000570495	ENST00000568858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000563169	ENST00000561924		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000563169	ENST00000290858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000563169	ENST00000412916		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
5CDS-intron	ENST00000563169	ENST00000568858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000564323	ENST00000561924		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000564323	ENST00000290858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000564323	ENST00000412916		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
5CDS-intron	ENST00000564323	ENST00000568858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000398253	ENST00000561924		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000398253	ENST00000290858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
In-frame	ENST00000398253	ENST00000412916		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
5CDS-intron	ENST00000398253	ENST00000568858		TCGA	LD	SKCM	TCGA-WE-A8ZQ-06A	ZFP90	chr16	68573728	+	CBFB	chr16	67116116	+
Frame-shit	ENST00000374050	ENST00000371817		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	ATP6V1G1	chr9	117350200	+	COL5A1	chr9	137655539	+
5CDS-intron	ENST00000374050	ENST00000464187		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	ATP6V1G1	chr9	117350200	+	COL5A1	chr9	137655539	+
3UTR-3CDS	ENST00000473413	ENST00000371817		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	ATP6V1G1	chr9	117350200	+	COL5A1	chr9	137655539	+
3UTR-intron	ENST00000473413	ENST00000464187		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	ATP6V1G1	chr9	117350200	+	COL5A1	chr9	137655539	+
In-frame	ENST00000429644	ENST00000478136		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
In-frame	ENST00000429644	ENST00000496687		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
5CDS-3UTR	ENST00000429644	ENST00000491017		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
In-frame	ENST00000489715	ENST00000478136		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
In-frame	ENST00000489715	ENST00000496687		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
5CDS-3UTR	ENST00000489715	ENST00000491017		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
intron-3CDS	ENST00000477426	ENST00000478136		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
intron-3CDS	ENST00000477426	ENST00000496687		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
intron-3UTR	ENST00000477426	ENST00000491017		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GBE1	chr3	81643059	-	FAM19A1	chr3	68466430	+
5UTR-3CDS	ENST00000493639	ENST00000216194		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GUCY1B2	chr13	51578389	-	ADSL	chr22	40749077	+
5UTR-intron	ENST00000493639	ENST00000454266		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GUCY1B2	chr13	51578389	-	ADSL	chr22	40749077	+
5UTR-intron	ENST00000493639	ENST00000342312		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GUCY1B2	chr13	51578389	-	ADSL	chr22	40749077	+
5UTR-intron	ENST00000493639	ENST00000480775		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	GUCY1B2	chr13	51578389	-	ADSL	chr22	40749077	+
intron-5UTR	ENST00000360655	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-intron	ENST00000360655	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-5UTR	ENST00000396085	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-intron	ENST00000396085	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-5UTR	ENST00000349880	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-intron	ENST00000349880	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-5UTR	ENST00000396087	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-intron	ENST00000396087	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-5UTR	ENST00000527559	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-intron	ENST00000527559	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-5UTR	ENST00000540292	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-intron	ENST00000540292	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-5UTR	ENST00000533917	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-intron	ENST00000533917	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-5UTR	ENST00000311043	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-intron	ENST00000311043	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-5UTR	ENST00000534229	ENST00000282032		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
intron-intron	ENST00000534229	ENST00000533457		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	NAV2	chr11	19735508	+	ARL14EP	chr11	30352433	+
5CDS-intron	ENST00000413366	ENST00000392411		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000321280		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000428708		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000575712		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000575245		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000435091		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000321300		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-3UTR	ENST00000413366	ENST00000573894		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000413366	ENST00000416299		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000392411		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000321280		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000428708		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000575712		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000575245		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000435091		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000321300		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-3UTR	ENST00000583361	ENST00000573894		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000583361	ENST00000416299		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	PRKCA	chr17	64492401	+	BAIAP2	chr17	79027468	+
In-frame	ENST00000286713	ENST00000373670		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000286713	ENST00000357244		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000286713	ENST00000423239		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000286713	ENST00000373665		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000286713	ENST00000335387		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5CDS-intron	ENST00000286713	ENST00000478216		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5CDS-intron	ENST00000286713	ENST00000471874		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-3CDS	ENST00000538954	ENST00000373670		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-3CDS	ENST00000538954	ENST00000357244		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-3CDS	ENST00000538954	ENST00000423239		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-3CDS	ENST00000538954	ENST00000373665		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-3CDS	ENST00000538954	ENST00000335387		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-intron	ENST00000538954	ENST00000478216		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5UTR-intron	ENST00000538954	ENST00000471874		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000347359	ENST00000373670		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000347359	ENST00000357244		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000347359	ENST00000423239		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000347359	ENST00000373665		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
In-frame	ENST00000347359	ENST00000335387		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5CDS-intron	ENST00000347359	ENST00000478216		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5CDS-intron	ENST00000347359	ENST00000471874		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	STOM	chr9	124132405	-	RC3H2	chr9	125655305	-
5CDS-5UTR	ENST00000263202	ENST00000493639		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	UFD1L	chr22	19462591	-	GUCY1B2	chr13	51622450	-
intron-5UTR	ENST00000360834	ENST00000493639		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	UFD1L	chr22	19462591	-	GUCY1B2	chr13	51622450	-
5CDS-5UTR	ENST00000399523	ENST00000493639		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	UFD1L	chr22	19462591	-	GUCY1B2	chr13	51622450	-
5UTR-5UTR	ENST00000484101	ENST00000493639		TCGA	LD	SKCM	TCGA-WE-A8ZR-06A	UFD1L	chr22	19462591	-	GUCY1B2	chr13	51622450	-
5CDS-3UTR	ENST00000460680	ENST00000380338		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000460680	ENST00000355930		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000460680	ENST00000429426		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000460680	ENST00000475957		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000460680	ENST00000380321		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-3UTR	ENST00000296288	ENST00000380338		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000296288	ENST00000355930		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000296288	ENST00000429426		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000296288	ENST00000475957		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-intron	ENST00000296288	ENST00000380321		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	BAP1	chr3	52443730	-	MLLT3	chr9	20342648	-
5CDS-5UTR	ENST00000274695	ENST00000538442		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000274695	ENST00000399150		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000274695	ENST00000252229		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000427115		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000442104		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000451603		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000546706		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000438954		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000458032		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000551950		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000437651		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000383514		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000551608		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000436531		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000436655		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000547574		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000400313		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000428416		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000549014		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000428059		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000451789		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000443156		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000274695	ENST00000551960		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000378624	ENST00000538442		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000378624	ENST00000399150		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000378624	ENST00000252229		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000427115		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000442104		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000451603		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000546706		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000438954		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000458032		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000551950		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000437651		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000383514		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000551608		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000436531		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000436655		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000547574		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000400313		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000428416		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000549014		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000428059		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000451789		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000443156		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000378624	ENST00000551960		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000378610	ENST00000538442		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000378610	ENST00000399150		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-5UTR	ENST00000378610	ENST00000252229		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000427115		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000442104		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000451603		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000546706		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000438954		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000458032		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000551950		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000437651		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000383514		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000551608		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000436531		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000436655		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000547574		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000400313		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000428416		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000549014		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000428059		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000451789		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000443156		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
5CDS-intron	ENST00000378610	ENST00000551960		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000476517	ENST00000538442		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000476517	ENST00000399150		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-5UTR	ENST00000476517	ENST00000252229		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000427115		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000442104		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000451603		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000546706		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000438954		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000458032		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000551950		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000437651		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000383514		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000551608		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000436531		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000436655		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000547574		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000400313		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000428416		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000549014		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000428059		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000451789		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000443156		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
intron-intron	ENST00000476517	ENST00000551960		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	CDKAL1	chr6	20548936	+	MICB	chr6	31473394	+
Frame-shit	ENST00000334528	ENST00000327490		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
Frame-shit	ENST00000334528	ENST00000589240		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
Frame-shit	ENST00000561249	ENST00000327490		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
Frame-shit	ENST00000561249	ENST00000589240		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
Frame-shit	ENST00000559047	ENST00000327490		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
Frame-shit	ENST00000559047	ENST00000589240		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
intron-3CDS	ENST00000558197	ENST00000327490		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
intron-3CDS	ENST00000558197	ENST00000589240		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
intron-3CDS	ENST00000559150	ENST00000327490		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
intron-3CDS	ENST00000559150	ENST00000589240		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
intron-3CDS	ENST00000320930	ENST00000327490		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
intron-3CDS	ENST00000320930	ENST00000589240		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FMN1	chr15	33218375	-	UBALD2	chr17	74266275	+
5CDS-intron	ENST00000380249	ENST00000482728		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000380249	ENST00000307106		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000380249	ENST00000477703		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000380249	ENST00000476842		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000338382	ENST00000482728		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000338382	ENST00000307106		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000338382	ENST00000477703		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
5CDS-intron	ENST00000338382	ENST00000476842		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000605086	ENST00000482728		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000605086	ENST00000307106		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000605086	ENST00000477703		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000605086	ENST00000476842		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000604828	ENST00000482728		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000604828	ENST00000307106		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000604828	ENST00000477703		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
intron-intron	ENST00000604828	ENST00000476842		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	FOCAD	chr9	20720533	+	SMIM4	chr3	52613034	+
In-frame	ENST00000327490	ENST00000334528		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
In-frame	ENST00000327490	ENST00000561249		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
In-frame	ENST00000327490	ENST00000559047		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
5CDS-intron	ENST00000327490	ENST00000558197		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
5CDS-intron	ENST00000327490	ENST00000559150		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
5CDS-intron	ENST00000327490	ENST00000320930		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
In-frame	ENST00000589240	ENST00000334528		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
In-frame	ENST00000589240	ENST00000561249		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
In-frame	ENST00000589240	ENST00000559047		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
5CDS-intron	ENST00000589240	ENST00000558197		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
5CDS-intron	ENST00000589240	ENST00000559150		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
5CDS-intron	ENST00000589240	ENST00000320930		TCGA	LD	SKCM	TCGA-WE-A8ZT-06A	UBALD2	chr17	74262050	+	FMN1	chr15	33261678	-
intron-3CDS	ENST00000430710	ENST00000403829		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000298687		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000350792		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397858		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-intron	ENST00000430710	ENST00000554104		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000555158		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000553503		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397853		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000360463		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000556147		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397856		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397855		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000554143		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397851		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397847		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000298684		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000430710	ENST00000397844		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-intron	ENST00000430710	ENST00000554277		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-3CDS	ENST00000399982	ENST00000403829		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000298687		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000350792		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397858		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-intron	ENST00000399982	ENST00000554104		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000555158		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000553503		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397853		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000360463		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000556147		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397856		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397855		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000554143		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397851		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397847		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000298684		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000399982	ENST00000397844		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-intron	ENST00000399982	ENST00000554277		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-3CDS	ENST00000557364	ENST00000403829		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000298687		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000350792		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397858		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-intron	ENST00000557364	ENST00000554104		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000555158		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000553503		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397853		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000360463		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000556147		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397856		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397855		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000554143		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397851		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397847		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000298684		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-5UTR	ENST00000557364	ENST00000397844		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
5UTR-intron	ENST00000557364	ENST00000554277		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-3CDS	ENST00000555962	ENST00000403829		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000298687		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000350792		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397858		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-intron	ENST00000555962	ENST00000554104		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000555158		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000553503		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397853		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000360463		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000556147		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397856		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397855		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000554143		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397851		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397847		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000298684		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-5UTR	ENST00000555962	ENST00000397844		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
intron-intron	ENST00000555962	ENST00000554277		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	CHD8	chr14	21924191	-	NDRG2	chr14	21491480	-
Frame-shit	ENST00000352241	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000352241	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000448226	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000448226	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000472437	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000472437	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000328528	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000328528	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000314589	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000314589	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000394355	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
Frame-shit	ENST00000394355	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000314557	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000314557	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000394351	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000394351	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000531774	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000531774	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000394348	ENST00000232603		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
intron-3CDS	ENST00000394348	ENST00000483760		TCGA	LD	SKCM	TCGA-WE-A8ZX-06A	MITF	chr3	69928534	+	MORC1	chr3	108788604	-
3UTR-3CDS	ENST00000453618	ENST00000369426		TCGA	LD	SKCM	TCGA-WE-AAA3-06A	SEC22B	chr1	145096621	-	WARS2	chr1	119619230	-
3UTR-3CDS	ENST00000453618	ENST00000235521		TCGA	LD	SKCM	TCGA-WE-AAA3-06A	SEC22B	chr1	145096621	-	WARS2	chr1	119619230	-
3UTR-5UTR	ENST00000453618	ENST00000537870		TCGA	LD	SKCM	TCGA-WE-AAA3-06A	SEC22B	chr1	145096621	-	WARS2	chr1	119619230	-
3UTR-intron	ENST00000453618	ENST00000497761		TCGA	LD	SKCM	TCGA-WE-AAA3-06A	SEC22B	chr1	145096621	-	WARS2	chr1	119619230	-
intron-5UTR	ENST00000355630	ENST00000359867		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000355630	ENST00000396832		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000355630	ENST00000400206		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000355630	ENST00000403904		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000355630	ENST00000413574		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000355630	ENST00000405675		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000355630	ENST00000498529		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000396617	ENST00000359867		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000396617	ENST00000396832		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000396617	ENST00000400206		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000396617	ENST00000403904		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000396617	ENST00000413574		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000396617	ENST00000405675		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000396617	ENST00000498529		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402042	ENST00000359867		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402042	ENST00000396832		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402042	ENST00000400206		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402042	ENST00000403904		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402042	ENST00000413574		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402042	ENST00000405675		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000402042	ENST00000498529		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000466278	ENST00000359867		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000466278	ENST00000396832		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000466278	ENST00000400206		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000466278	ENST00000403904		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000466278	ENST00000413574		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000466278	ENST00000405675		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000466278	ENST00000498529		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000359867		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000396832		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000400206		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000403904		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000413574		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000407029	ENST00000405675		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000407029	ENST00000498529		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000359867		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000396832		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000400206		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000403904		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000413574		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-5UTR	ENST00000402630	ENST00000405675		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
intron-intron	ENST00000402630	ENST00000498529		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	MKL1	chr22	40929594	-	CSNK1E	chr22	38710174	-
Frame-shit	ENST00000216218	ENST00000401548		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	ST13	chr22	41252435	-	MEI1	chr22	42154369	+
Frame-shit	ENST00000216218	ENST00000540833		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	ST13	chr22	41252435	-	MEI1	chr22	42154369	+
Frame-shit	ENST00000216218	ENST00000400107		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	ST13	chr22	41252435	-	MEI1	chr22	42154369	+
5CDS-5UTR	ENST00000216218	ENST00000300398		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	ST13	chr22	41252435	-	MEI1	chr22	42154369	+
5CDS-5UTR	ENST00000216218	ENST00000540880		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	ST13	chr22	41252435	-	MEI1	chr22	42154369	+
5CDS-intron	ENST00000216218	ENST00000476893		TCGA	LD	SKCM	TCGA-XV-A9W2-01A	ST13	chr22	41252435	-	MEI1	chr22	42154369	+
In-frame	ENST00000334126	ENST00000393958		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000334126	ENST00000393960		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000334126	ENST00000355677		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000334126	ENST00000524491		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000334126	ENST00000529047		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000334126	ENST00000393955		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000334126	ENST00000528224		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000313663	ENST00000393958		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000313663	ENST00000393960		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000313663	ENST00000355677		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000313663	ENST00000524491		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000313663	ENST00000529047		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000313663	ENST00000393955		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000313663	ENST00000528224		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-3CDS	ENST00000542452	ENST00000393958		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-3CDS	ENST00000542452	ENST00000393960		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-3CDS	ENST00000542452	ENST00000355677		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-5UTR	ENST00000542452	ENST00000524491		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-intron	ENST00000542452	ENST00000529047		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-intron	ENST00000542452	ENST00000393955		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
intron-intron	ENST00000542452	ENST00000528224		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000539061	ENST00000393958		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000539061	ENST00000393960		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
In-frame	ENST00000539061	ENST00000355677		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-5UTR	ENST00000539061	ENST00000524491		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000539061	ENST00000529047		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000539061	ENST00000393955		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000539061	ENST00000528224		TCGA	LD	SKCM	TCGA-XV-A9W5-01A	C2CD3	chr11	73872444	-	PC	chr11	66639630	-
5CDS-intron	ENST00000396821	ENST00000396504		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000396821	ENST00000355209		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000396821	ENST00000337566		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000396821	ENST00000407461		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000396821	ENST00000420561		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
intron-intron	ENST00000444597	ENST00000396504		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
intron-intron	ENST00000444597	ENST00000355209		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
intron-intron	ENST00000444597	ENST00000337566		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
intron-intron	ENST00000444597	ENST00000407461		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
intron-intron	ENST00000444597	ENST00000420561		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000381633	ENST00000396504		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000381633	ENST00000355209		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000381633	ENST00000337566		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000381633	ENST00000407461		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5CDS-intron	ENST00000381633	ENST00000420561		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5UTR-intron	ENST00000432525	ENST00000396504		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5UTR-intron	ENST00000432525	ENST00000355209		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5UTR-intron	ENST00000432525	ENST00000337566		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5UTR-intron	ENST00000432525	ENST00000407461		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5UTR-intron	ENST00000432525	ENST00000420561		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	DDX17	chr22	38894091	-	POLR3H	chr22	41936432	-
5UTR-3CDS	ENST00000353383	ENST00000341199		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
5UTR-3CDS	ENST00000353383	ENST00000430704		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
5UTR-3CDS	ENST00000353383	ENST00000443967		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
5UTR-3CDS	ENST00000353383	ENST00000332772		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
5UTR-intron	ENST00000353383	ENST00000429602		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
5UTR-intron	ENST00000353383	ENST00000503595		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000489697	ENST00000341199		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000489697	ENST00000430704		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000489697	ENST00000443967		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000489697	ENST00000332772		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-intron	ENST00000489697	ENST00000429602		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-intron	ENST00000489697	ENST00000503595		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000261641	ENST00000341199		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000261641	ENST00000430704		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000261641	ENST00000443967		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-3CDS	ENST00000261641	ENST00000332772		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-intron	ENST00000261641	ENST00000429602		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
intron-intron	ENST00000261641	ENST00000503595		TCGA	LD	SKCM	TCGA-XV-AAZY-01A	RAI1	chr17	17627473	+	SIMC1	chr5	175763723	+
Frame-shit	ENST00000314100	ENST00000254190		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000314100	ENST00000543813		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
Frame-shit	ENST00000481247	ENST00000254190		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000481247	ENST00000543813		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
Frame-shit	ENST00000419706	ENST00000254190		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000419706	ENST00000543813		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
In-frame	ENST00000408958	ENST00000254190		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000408958	ENST00000543813		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
In-frame	ENST00000403056	ENST00000254190		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
5CDS-5UTR	ENST00000403056	ENST00000543813		TCGA	LD	SKCM	TCGA-YD-A89C-06A	BTBD9	chr6	38545376	-	CHSY1	chr15	101719185	-
Frame-shit	ENST00000254190	ENST00000314100		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
Frame-shit	ENST00000254190	ENST00000481247		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
Frame-shit	ENST00000254190	ENST00000419706		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
Frame-shit	ENST00000254190	ENST00000408958		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
Frame-shit	ENST00000254190	ENST00000403056		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
intron-3CDS	ENST00000543813	ENST00000314100		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
intron-3CDS	ENST00000543813	ENST00000481247		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
intron-3CDS	ENST00000543813	ENST00000419706		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
intron-3CDS	ENST00000543813	ENST00000408958		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
intron-3CDS	ENST00000543813	ENST00000403056		TCGA	LD	SKCM	TCGA-YD-A89C-06A	CHSY1	chr15	101775287	-	BTBD9	chr6	38548213	-
In-frame	ENST00000369135	ENST00000545683		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
5CDS-intron	ENST00000369135	ENST00000427880		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
5CDS-intron	ENST00000369135	ENST00000469483		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
5CDS-intron	ENST00000369135	ENST00000369167		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
intron-3CDS	ENST00000479905	ENST00000545683		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
intron-intron	ENST00000479905	ENST00000427880		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
intron-intron	ENST00000479905	ENST00000469483		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
intron-intron	ENST00000479905	ENST00000369167		TCGA	LD	SKCM	TCGA-YD-A89C-06A	OTUD7B	chr1	149949361	-	HIST2H2BF	chr1	149754816	-
5CDS-3UTR	ENST00000428554	ENST00000487556		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000428554	ENST00000372517		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000428554	ENST00000372514		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000428554	ENST00000328249		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000507855	ENST00000487556		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000507855	ENST00000372517		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000507855	ENST00000372514		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000507855	ENST00000328249		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
intron-3UTR	ENST00000475614	ENST00000487556		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
intron-3UTR	ENST00000475614	ENST00000372517		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
intron-3UTR	ENST00000475614	ENST00000372514		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
intron-3UTR	ENST00000475614	ENST00000328249		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000342022	ENST00000487556		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000342022	ENST00000372517		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000342022	ENST00000372514		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000342022	ENST00000328249		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000340612	ENST00000487556		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000340612	ENST00000372517		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000340612	ENST00000372514		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000340612	ENST00000328249		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000390640	ENST00000487556		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000390640	ENST00000372517		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000390640	ENST00000372514		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
5CDS-3UTR	ENST00000390640	ENST00000328249		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	CCDC30	chr1	43055154	+	ERMAP	chr1	43305704	+
Frame-shit	ENST00000522566	ENST00000355875		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000522566	ENST00000366541		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000522566	ENST00000343783		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000522566	ENST00000391846		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000522566	ENST00000496361		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000358755	ENST00000355875		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000358755	ENST00000366541		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000358755	ENST00000343783		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000358755	ENST00000391846		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000358755	ENST00000496361		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000523739	ENST00000355875		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000523739	ENST00000366541		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000523739	ENST00000343783		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000523739	ENST00000391846		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000523739	ENST00000496361		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000540287	ENST00000355875		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
Frame-shit	ENST00000540287	ENST00000366541		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000540287	ENST00000343783		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000540287	ENST00000391846		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5CDS-intron	ENST00000540287	ENST00000496361		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	FZD6	chr8	104342293	+	SDCCAG8	chr1	243433407	+
5UTR-3CDS	ENST00000457714	ENST00000415807		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-3CDS	ENST00000457714	ENST00000336824		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-3CDS	ENST00000457714	ENST00000416957		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-intron	ENST00000457714	ENST00000392699		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-intron	ENST00000457714	ENST00000421757		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-intron	ENST00000457714	ENST00000423424		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-intron	ENST00000457714	ENST00000476794		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000361589	ENST00000415807		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000361589	ENST00000336824		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000361589	ENST00000416957		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000361589	ENST00000392699		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000361589	ENST00000421757		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000361589	ENST00000423424		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000361589	ENST00000476794		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000401917	ENST00000415807		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000401917	ENST00000336824		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000401917	ENST00000416957		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000401917	ENST00000392699		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000401917	ENST00000421757		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000401917	ENST00000423424		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000401917	ENST00000476794		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000545397	ENST00000415807		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000545397	ENST00000336824		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000545397	ENST00000416957		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000545397	ENST00000392699		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000545397	ENST00000421757		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000545397	ENST00000423424		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000545397	ENST00000476794		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000466350	ENST00000415807		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000466350	ENST00000336824		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-3CDS	ENST00000466350	ENST00000416957		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000466350	ENST00000392699		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000466350	ENST00000421757		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000466350	ENST00000423424		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
intron-intron	ENST00000466350	ENST00000476794		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	NLGN1	chr3	173152868	+	FNDC3B	chr3	172080423	+
5UTR-3CDS	ENST00000372508	ENST00000372009		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372508	ENST00000361297		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-intron	ENST00000372508	ENST00000477968		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372507	ENST00000372009		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372507	ENST00000361297		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-intron	ENST00000372507	ENST00000477968		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372506	ENST00000372009		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372506	ENST00000361297		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-intron	ENST00000372506	ENST00000477968		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000397044	ENST00000372009		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000397044	ENST00000361297		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-intron	ENST00000397044	ENST00000477968		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372504	ENST00000372009		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-3CDS	ENST00000372504	ENST00000361297		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5UTR-intron	ENST00000372504	ENST00000477968		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
intron-3CDS	ENST00000372502	ENST00000372009		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
intron-3CDS	ENST00000372502	ENST00000361297		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
intron-intron	ENST00000372502	ENST00000477968		TCGA	LD	SKCM	TCGA-YD-A9TA-06A	ZNF691	chr1	43312328	+	MAST2	chr1	46425058	+
5CDS-5UTR	ENST00000361545	ENST00000324896		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000353920		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000346152		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000416070		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000443166		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-intron	ENST00000361545	ENST00000438130		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000324896		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000353920		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000346152		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000416070		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000443166		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-intron	ENST00000223398	ENST00000438130		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000324896		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000353920		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000346152		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000416070		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000443166		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-intron	ENST00000395060	ENST00000438130		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	CLIP2	chr7	73795193	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000405402	ENST00000602758		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-5UTR	ENST00000405402	ENST00000602719		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000405402	ENST00000602583		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000405402	ENST00000602675		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000405402	ENST00000284245		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000405402	ENST00000602914		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000405402	ENST00000602766		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-5UTR	ENST00000253458	ENST00000602758		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-5UTR	ENST00000253458	ENST00000602719		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000253458	ENST00000602583		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000253458	ENST00000602675		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000253458	ENST00000284245		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000253458	ENST00000602914		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000253458	ENST00000602766		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-5UTR	ENST00000393243	ENST00000602758		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-5UTR	ENST00000393243	ENST00000602719		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000393243	ENST00000602583		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000393243	ENST00000602675		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000393243	ENST00000284245		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000393243	ENST00000602914		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-intron	ENST00000393243	ENST00000602766		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-5UTR	ENST00000471070	ENST00000602758		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-5UTR	ENST00000471070	ENST00000602719		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-intron	ENST00000471070	ENST00000602583		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-intron	ENST00000471070	ENST00000602675		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-intron	ENST00000471070	ENST00000284245		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-intron	ENST00000471070	ENST00000602914		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
intron-intron	ENST00000471070	ENST00000602766		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	GSE1	chr16	85682357	+	C16orf74	chr16	85724383	-
5CDS-5UTR	ENST00000268704	ENST00000405402		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-5UTR	ENST00000268704	ENST00000253458		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-5UTR	ENST00000268704	ENST00000393243		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-intron	ENST00000268704	ENST00000471070		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-5UTR	ENST00000341316	ENST00000405402		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-5UTR	ENST00000341316	ENST00000253458		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-5UTR	ENST00000341316	ENST00000393243		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-intron	ENST00000341316	ENST00000471070		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
intron-5UTR	ENST00000565891	ENST00000405402		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
intron-5UTR	ENST00000565891	ENST00000253458		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
intron-5UTR	ENST00000565891	ENST00000393243		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
intron-intron	ENST00000565891	ENST00000471070		TCGA	LD	SKCM	TCGA-YG-AA3O-06A	SPG7	chr16	89599044	+	GSE1	chr16	85682158	+
5CDS-5UTR	ENST00000420843	ENST00000356341		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000420843	ENST00000530617		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000420843	ENST00000278568		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000420843	ENST00000528203		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000420843	ENST00000525542		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000393505	ENST00000356341		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000393505	ENST00000530617		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000393505	ENST00000278568		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000393505	ENST00000528203		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000393505	ENST00000525542		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000360025	ENST00000356341		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000360025	ENST00000530617		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000360025	ENST00000278568		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000360025	ENST00000528203		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-intron	ENST00000360025	ENST00000525542		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ARRB1	chr11	75062632	-	PAK1	chr11	77103586	-
5CDS-5UTR	ENST00000227507	ENST00000355303		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
5CDS-intron	ENST00000227507	ENST00000398543		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
5CDS-intron	ENST00000227507	ENST00000538023		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
5CDS-intron	ENST00000227507	ENST00000316296		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
5CDS-intron	ENST00000227507	ENST00000530676		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
5CDS-intron	ENST00000227507	ENST00000531349		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
5CDS-intron	ENST00000227507	ENST00000525494		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-5UTR	ENST00000536559	ENST00000355303		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-intron	ENST00000536559	ENST00000398543		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-intron	ENST00000536559	ENST00000538023		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-intron	ENST00000536559	ENST00000316296		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-intron	ENST00000536559	ENST00000530676		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-intron	ENST00000536559	ENST00000531349		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
intron-intron	ENST00000536559	ENST00000525494		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CCND1	chr11	69458759	+	ANO1	chr11	69924648	+
Frame-shit	ENST00000346329	ENST00000393799		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000530427		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000393800		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000534534		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000524845		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000265637		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000524904		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000393801		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000265636		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000529710		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000346329	ENST00000527403		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
Frame-shit	ENST00000301843	ENST00000393799		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000530427		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000393800		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000534534		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000524845		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000265637		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000524904		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000393801		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000265636		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000529710		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000301843	ENST00000527403		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-3CDS	ENST00000527622	ENST00000393799		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000530427		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000393800		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000534534		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000524845		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000265637		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000524904		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000393801		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000265636		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000529710		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-intron	ENST00000527622	ENST00000527403		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
Frame-shit	ENST00000376561	ENST00000393799		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000530427		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000393800		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000534534		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000524845		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000265637		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000524904		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000393801		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000265636		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000529710		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000376561	ENST00000527403		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
Frame-shit	ENST00000538675	ENST00000393799		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000530427		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000393800		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000534534		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000524845		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000265637		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000524904		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000393801		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000265636		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000529710		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
5CDS-intron	ENST00000538675	ENST00000527403		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	CTTN	chr11	70271507	+	PPP6R3	chr11	68350511	+
intron-3CDS	ENST00000340149	ENST00000290246		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-3CDS	ENST00000340149	ENST00000372176		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-3CDS	ENST00000340149	ENST00000396391		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-3CDS	ENST00000340149	ENST00000439931		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-intron	ENST00000340149	ENST00000445496		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-intron	ENST00000340149	ENST00000454865		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-intron	ENST00000340149	ENST00000352077		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
intron-intron	ENST00000340149	ENST00000488853		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
Frame-shit	ENST00000361507	ENST00000290246		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
Frame-shit	ENST00000361507	ENST00000372176		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
Frame-shit	ENST00000361507	ENST00000396391		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
Frame-shit	ENST00000361507	ENST00000439931		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5CDS-intron	ENST00000361507	ENST00000445496		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5CDS-intron	ENST00000361507	ENST00000454865		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5CDS-intron	ENST00000361507	ENST00000352077		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5CDS-intron	ENST00000361507	ENST00000488853		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-3CDS	ENST00000526030	ENST00000290246		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-3CDS	ENST00000526030	ENST00000372176		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-3CDS	ENST00000526030	ENST00000396391		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-3CDS	ENST00000526030	ENST00000439931		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-intron	ENST00000526030	ENST00000445496		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-intron	ENST00000526030	ENST00000454865		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-intron	ENST00000526030	ENST00000352077		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
5UTR-intron	ENST00000526030	ENST00000488853		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	GAB2	chr11	78128692	-	ELMO2	chr20	45016058	-
Frame-shit	ENST00000393799	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000393799	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393799	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393799	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393799	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000393799	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-3CDS	ENST00000530427	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-3UTR	ENST00000530427	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-5UTR	ENST00000530427	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-5UTR	ENST00000530427	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-5UTR	ENST00000530427	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-intron	ENST00000530427	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000393800	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000393800	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393800	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393800	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393800	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000393800	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-3CDS	ENST00000534534	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-3UTR	ENST00000534534	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-5UTR	ENST00000534534	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-5UTR	ENST00000534534	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-5UTR	ENST00000534534	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
intron-intron	ENST00000534534	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000524845	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000524845	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000524845	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000524845	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000524845	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000524845	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000265637	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000265637	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000265637	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000265637	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000265637	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000265637	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000524904	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000524904	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000524904	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000524904	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000524904	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000524904	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000393801	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000393801	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393801	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393801	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000393801	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000393801	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000265636	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000265636	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000265636	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000265636	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000265636	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000265636	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000529710	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000529710	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000529710	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000529710	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000529710	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000529710	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000527403	ENST00000532485		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-3UTR	ENST00000527403	ENST00000530182		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000527403	ENST00000526597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000527403	ENST00000533873		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-5UTR	ENST00000527403	ENST00000538157		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
5CDS-intron	ENST00000527403	ENST00000544113		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	PPP6R3	chr11	68305359	+	ACER3	chr11	76687333	+
Frame-shit	ENST00000493763	ENST00000372899		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000493763	ENST00000372901		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-3UTR	ENST00000493763	ENST00000372883		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-intron	ENST00000493763	ENST00000372903		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
3UTR-3CDS	ENST00000397415	ENST00000372899		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
3UTR-3CDS	ENST00000397415	ENST00000372901		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
3UTR-3UTR	ENST00000397415	ENST00000372883		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
3UTR-intron	ENST00000397415	ENST00000372903		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000304734	ENST00000372899		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000304734	ENST00000372901		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-3UTR	ENST00000304734	ENST00000372883		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-intron	ENST00000304734	ENST00000372903		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000424341	ENST00000372899		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000424341	ENST00000372901		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-3UTR	ENST00000424341	ENST00000372883		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-intron	ENST00000424341	ENST00000372903		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000602561	ENST00000372899		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
Frame-shit	ENST00000602561	ENST00000372901		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-3UTR	ENST00000602561	ENST00000372883		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-intron	ENST00000602561	ENST00000372903		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	RPL7L1	chr6	42848704	+	UBR2	chr6	42650793	+
5CDS-5UTR	ENST00000371657	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371657	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371657	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371657	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371657	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371657	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000371657	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000371657	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000396059	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000396059	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000396059	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000396059	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000396059	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000396059	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-3UTR	ENST00000396059	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-3UTR	ENST00000396059	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371674	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371674	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371674	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371674	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371674	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371674	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000371674	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000371674	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371677	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371677	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371677	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371677	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371677	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000371677	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000371677	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000371677	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000340309	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000340309	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000340309	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000340309	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000340309	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-5UTR	ENST00000340309	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000340309	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-3UTR	ENST00000340309	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000420027	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000420027	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000420027	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000420027	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000420027	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000420027	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-3UTR	ENST00000420027	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-3UTR	ENST00000420027	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000415862	ENST00000541951		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000415862	ENST00000310571		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000415862	ENST00000535604		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000415862	ENST00000536003		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000415862	ENST00000544552		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-5UTR	ENST00000415862	ENST00000376384		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-3UTR	ENST00000415862	ENST00000543079		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
intron-3UTR	ENST00000415862	ENST00000544909		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UBE2V1	chr20	48713209	-	PAAF1	chr11	73610191	+
5CDS-intron	ENST00000356136	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
5CDS-intron	ENST00000356136	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
5CDS-intron	ENST00000356136	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
5CDS-intron	ENST00000528420	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
5CDS-intron	ENST00000528420	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
5CDS-intron	ENST00000528420	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000533454	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000533454	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000533454	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000531818	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000531818	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000531818	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000532130	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000532130	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000532130	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000539288	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000539288	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000539288	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
3UTR-intron	ENST00000525872	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
3UTR-intron	ENST00000525872	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
3UTR-intron	ENST00000525872	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000538870	ENST00000540363		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000538870	ENST00000331597		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
intron-intron	ENST00000538870	ENST00000427714		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	UVRAG	chr11	75623083	+	P4HA3	chr11	74015457	-
5UTR-3CDS	ENST00000454862	ENST00000373184		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-3CDS	ENST00000454862	ENST00000373187		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-3CDS	ENST00000454862	ENST00000356100		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-3CDS	ENST00000454862	ENST00000373190		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-3CDS	ENST00000454862	ENST00000373193		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-3CDS	ENST00000454862	ENST00000373198		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-3CDS	ENST00000454862	ENST00000373201		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5UTR-5UTR	ENST00000454862	ENST00000485499		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000373184		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000373187		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000356100		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000373190		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000373193		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000373198		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
Frame-shit	ENST00000255152	ENST00000373201		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
5CDS-5UTR	ENST00000255152	ENST00000485499		TCGA	LD	SKCM	TCGA-YG-AA3P-06A	ZSWIM3	chr20	44486619	+	PTPRT	chr20	41514572	-
In-frame	ENST00000543252	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000543252	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000543252	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
5CDS-intron	ENST00000543252	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000344138	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000344138	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000344138	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
5CDS-intron	ENST00000344138	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000540310	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000540310	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000540310	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
5CDS-intron	ENST00000540310	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
3UTR-3CDS	ENST00000478445	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
3UTR-3CDS	ENST00000478445	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
3UTR-3CDS	ENST00000478445	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
3UTR-intron	ENST00000478445	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000544756	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000544756	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000544756	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
5CDS-intron	ENST00000544756	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
intron-3CDS	ENST00000399090	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
intron-3CDS	ENST00000399090	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
intron-3CDS	ENST00000399090	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
intron-intron	ENST00000399090	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000407075	ENST00000216194		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000407075	ENST00000454266		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
In-frame	ENST00000407075	ENST00000342312		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
5CDS-intron	ENST00000407075	ENST00000480775		TCGA	LD	SKCM	TCGA-Z2-A8RT-06A	GRAP2	chr22	40362040	+	ADSL	chr22	40745836	+
5UTR-3CDS	ENST00000476844	ENST00000338458		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-3CDS	ENST00000476844	ENST00000496106		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-5UTR	ENST00000476844	ENST00000498517		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000476844	ENST00000296315		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000476844	ENST00000413728		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000476844	ENST00000497267		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000476844	ENST00000495373		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-3CDS	ENST00000492590	ENST00000338458		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-3CDS	ENST00000492590	ENST00000496106		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-5UTR	ENST00000492590	ENST00000498517		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000492590	ENST00000296315		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000492590	ENST00000413728		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000492590	ENST00000497267		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000492590	ENST00000495373		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-3CDS	ENST00000466788	ENST00000338458		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-3CDS	ENST00000466788	ENST00000496106		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-5UTR	ENST00000466788	ENST00000498517		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000466788	ENST00000296315		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000466788	ENST00000413728		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000466788	ENST00000497267		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000466788	ENST00000495373		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-3CDS	ENST00000468189	ENST00000338458		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-3CDS	ENST00000468189	ENST00000496106		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-5UTR	ENST00000468189	ENST00000498517		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000468189	ENST00000296315		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000468189	ENST00000413728		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000468189	ENST00000497267		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
5UTR-intron	ENST00000468189	ENST00000495373		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-3CDS	ENST00000341848	ENST00000338458		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-3CDS	ENST00000341848	ENST00000496106		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-5UTR	ENST00000341848	ENST00000498517		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000341848	ENST00000296315		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000341848	ENST00000413728		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000341848	ENST00000497267		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
intron-intron	ENST00000341848	ENST00000495373		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	FHIT	chr3	61186291	-	ARHGEF3	chr3	56916382	-
3UTR-3CDS	ENST00000459979	ENST00000249442		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
3UTR-3CDS	ENST00000459979	ENST00000392529		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
3UTR-intron	ENST00000459979	ENST00000443241		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000468418	ENST00000249442		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000468418	ENST00000392529		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-intron	ENST00000468418	ENST00000443241		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000410016	ENST00000249442		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000410016	ENST00000392529		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-intron	ENST00000410016	ENST00000443241		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000249440	ENST00000249442		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-3CDS	ENST00000249440	ENST00000392529		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
intron-intron	ENST00000249440	ENST00000443241		TCGA	LD	SKCM	TCGA-Z2-AA3S-06A	HOXD3	chr2	177001727	+	MTX2	chr2	177161588	+
In-frame	ENST00000378097	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378097	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378097	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000352527	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000352527	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000352527	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000341524	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000341524	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000341524	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000164247	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000164247	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000164247	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000378083	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000378083	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000378083	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378111	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378111	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378111	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378092	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378092	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378092	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000602612	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000602612	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000602612	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378087	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
In-frame	ENST00000378087	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000378087	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-3CDS	ENST00000459822	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-3CDS	ENST00000459822	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
3UTR-intron	ENST00000459822	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000458166	ENST00000608083		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-3CDS	ENST00000458166	ENST00000377855		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000545482		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000361521		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000377842		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000377845		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
intron-intron	ENST00000458166	ENST00000541130		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	KCNAB2	chr1	6100705	+	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000360416	ENST00000006777		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000360416	ENST00000318622		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000360416	ENST00000468304		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000360416	ENST00000428119		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000379980	ENST00000006777		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000379980	ENST00000318622		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000379980	ENST00000468304		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000379980	ENST00000428119		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000396239	ENST00000006777		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000396239	ENST00000318622		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000396239	ENST00000468304		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000396239	ENST00000428119		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000269243	ENST00000006777		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-5UTR	ENST00000269243	ENST00000318622		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-3UTR	ENST00000269243	ENST00000468304		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
5CDS-intron	ENST00000269243	ENST00000428119		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	MYH10	chr17	8449862	-	RHBDD2	chr7	75510683	+
intron-3CDS	ENST00000543385	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-3CDS	ENST00000543385	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-intron	ENST00000543385	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-intron	ENST00000543385	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-intron	ENST00000543385	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-intron	ENST00000543385	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-intron	ENST00000543385	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
intron-intron	ENST00000543385	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000336727	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000336727	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000336727	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000336727	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000336727	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000336727	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000336727	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000336727	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000344733	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000344733	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000344733	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000344733	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000344733	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000344733	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000344733	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000344733	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000382788	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000382788	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000382788	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000382788	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000382788	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000382788	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000382788	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000382788	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000306648	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000306648	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000306648	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000306648	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000306648	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000306648	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000306648	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000306648	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000338806	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000338806	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000338806	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000338806	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000338806	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000338806	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000338806	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000338806	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-3CDS	ENST00000508158	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-3CDS	ENST00000508158	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-intron	ENST00000508158	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-intron	ENST00000508158	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-intron	ENST00000508158	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-intron	ENST00000508158	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-intron	ENST00000508158	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
3UTR-intron	ENST00000508158	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000538395	ENST00000421177		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000538395	ENST00000513555		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000538395	ENST00000450293		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000538395	ENST00000505246		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000538395	ENST00000506380		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000538395	ENST00000397958		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000538395	ENST00000433139		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
5CDS-intron	ENST00000538395	ENST00000504171		TCGA	LD	SKCM	TCGA-Z2-AA3V-06A	RGS12	chr4	3388164	+	NSG1	chr4	4411300	+
Frame-shit	ENST00000292246	ENST00000414099		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000423572		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000443581		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000413689		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000425664		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000451551		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000333535		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000455624		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000450102		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000292246	ENST00000449557		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
5CDS-intron	ENST00000292246	ENST00000464652		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000414099		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000423572		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000443581		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000413689		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000425664		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000451551		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000333535		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000455624		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000450102		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000350459	ENST00000449557		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
5CDS-intron	ENST00000350459	ENST00000464652		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000414099		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000423572		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000443581		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000413689		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000425664		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000451551		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000333535		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000455624		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000450102		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000396091	ENST00000449557		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
5CDS-intron	ENST00000396091	ENST00000464652		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000414099		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000423572		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000443581		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000413689		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000425664		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000451551		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000333535		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000455624		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000450102		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000414522	ENST00000449557		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-intron	ENST00000414522	ENST00000464652		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000414099		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000423572		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000443581		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000413689		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000425664		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000451551		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000333535		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000455624		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000450102		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000451430	ENST00000449557		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
5CDS-intron	ENST00000451430	ENST00000464652		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000414099		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000423572		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000443581		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000413689		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000425664		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000451551		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000333535		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000455624		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000450102		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-3CDS	ENST00000495772	ENST00000449557		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
intron-intron	ENST00000495772	ENST00000464652		TCGA	RV	STAD	TCGA-CG-4436-01A	ANO10	chr3	43474103	-	SCN5A	chr3	38629064	-
Frame-shit	ENST00000373381	ENST00000445597		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
Frame-shit	ENST00000373381	ENST00000430092		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
Frame-shit	ENST00000373381	ENST00000439375		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
5CDS-intron	ENST00000373381	ENST00000400952		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
5CDS-intron	ENST00000373381	ENST00000366849		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
5CDS-intron	ENST00000373381	ENST00000366850		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
5CDS-intron	ENST00000373381	ENST00000498360		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
5CDS-intron	ENST00000373381	ENST00000366848		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373380	ENST00000445597		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373380	ENST00000430092		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373380	ENST00000439375		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373380	ENST00000400952		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373380	ENST00000366849		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373380	ENST00000366850		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373380	ENST00000498360		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373380	ENST00000366848		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373377	ENST00000445597		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373377	ENST00000430092		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373377	ENST00000439375		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373377	ENST00000400952		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373377	ENST00000366849		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373377	ENST00000366850		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373377	ENST00000498360		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373377	ENST00000366848		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373388	ENST00000445597		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373388	ENST00000430092		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000373388	ENST00000439375		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373388	ENST00000400952		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373388	ENST00000366849		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373388	ENST00000366850		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373388	ENST00000498360		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000373388	ENST00000366848		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000489419	ENST00000445597		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000489419	ENST00000430092		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000489419	ENST00000439375		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000489419	ENST00000400952		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000489419	ENST00000366849		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000489419	ENST00000366850		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000489419	ENST00000498360		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000489419	ENST00000366848		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000338325	ENST00000445597		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000338325	ENST00000430092		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000338325	ENST00000439375		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000338325	ENST00000400952		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000338325	ENST00000366849		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000338325	ENST00000366850		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000338325	ENST00000498360		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-intron	ENST00000338325	ENST00000366848		TCGA	RV	STAD	TCGA-VQ-A922-01A	CSMD2	chr1	34498195	-	DNAH14	chr1	225586222	+
intron-3CDS	ENST00000309311	ENST00000394375		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-3CDS	ENST00000309311	ENST00000608620		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-intron	ENST00000309311	ENST00000238983		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-intron	ENST00000309311	ENST00000355843		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-3CDS	ENST00000600720	ENST00000394375		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-3CDS	ENST00000600720	ENST00000608620		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-intron	ENST00000600720	ENST00000238983		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
intron-intron	ENST00000600720	ENST00000355843		TCGA	RV	STAD	TCGA-CG-4301-01A	EEF2	chr19	3972316	-	LIPF	chr10	90424198	+
Frame-shit	ENST00000234590	ENST00000263593		TCGA	RV	STAD	TCGA-BR-8486-01A	ENO1	chr1	8921061	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000234590	ENST00000545756		TCGA	RV	STAD	TCGA-BR-8486-01A	ENO1	chr1	8921061	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000234590	ENST00000525730		TCGA	RV	STAD	TCGA-BR-8486-01A	ENO1	chr1	8921061	-	SIAE	chr11	124543777	-
In-frame	ENST00000543086	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000543086	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000543086	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000546231	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000546231	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000546231	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000397203	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000397203	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000397203	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000360905	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000360905	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000360905	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000589028	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000589028	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000589028	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000355446	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
In-frame	ENST00000355446	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
5CDS-intron	ENST00000355446	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
3UTR-3CDS	ENST00000536573	ENST00000295454		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
3UTR-3CDS	ENST00000536573	ENST00000538619		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
3UTR-intron	ENST00000536573	ENST00000509366		TCGA	RV	STAD	TCGA-CG-4476-01A	ERC1	chr12	1299218	+	GABRB1	chr4	47322144	+
Frame-shit	ENST00000373030	ENST00000534862		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373030	ENST00000538448		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373030	ENST00000375862		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373030	ENST00000520553		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373030	ENST00000518730		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373030	ENST00000375852		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373039	ENST00000534862		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373039	ENST00000538448		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373039	ENST00000375862		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373039	ENST00000520553		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373039	ENST00000518730		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
Frame-shit	ENST00000373039	ENST00000375852		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
intron-3CDS	ENST00000471199	ENST00000534862		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
intron-3CDS	ENST00000471199	ENST00000538448		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
intron-3CDS	ENST00000471199	ENST00000375862		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
intron-3CDS	ENST00000471199	ENST00000520553		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
intron-3CDS	ENST00000471199	ENST00000518730		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
intron-3CDS	ENST00000471199	ENST00000375852		TCGA	RV	STAD	TCGA-CG-4304-01A	IFT52	chr20	42249565	+	HCK	chr20	30671697	+
In-frame	ENST00000314256	ENST00000335464		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000314256	ENST00000417024		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000314256	ENST00000582773		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000314256	ENST00000582330		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000314256	ENST00000584171		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
intron-3CDS	ENST00000579208	ENST00000335464		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000579208	ENST00000417024		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000579208	ENST00000582773		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000579208	ENST00000582330		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
intron-intron	ENST00000579208	ENST00000584171		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
In-frame	ENST00000375248	ENST00000335464		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000375248	ENST00000417024		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000375248	ENST00000582773		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000375248	ENST00000582330		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
5CDS-intron	ENST00000375248	ENST00000584171		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
3UTR-3CDS	ENST00000583795	ENST00000335464		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
3UTR-intron	ENST00000583795	ENST00000417024		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
3UTR-intron	ENST00000583795	ENST00000582773		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
3UTR-intron	ENST00000583795	ENST00000582330		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
3UTR-intron	ENST00000583795	ENST00000584171		TCGA	RV	STAD	TCGA-FP-8631-01A	KIAA0195	chr17	73482507	+	TMEM104	chr17	72832066	+
In-frame	ENST00000541515	ENST00000265631		TCGA	RV	STAD	TCGA-CG-4477-01A	LUC7L2	chr7	139026268	+	SLC25A13	chr7	95906650	-
In-frame	ENST00000541515	ENST00000416240		TCGA	RV	STAD	TCGA-CG-4477-01A	LUC7L2	chr7	139026268	+	SLC25A13	chr7	95906650	-
5CDS-5UTR	ENST00000541515	ENST00000542654		TCGA	RV	STAD	TCGA-CG-4477-01A	LUC7L2	chr7	139026268	+	SLC25A13	chr7	95906650	-
5CDS-intron	ENST00000541515	ENST00000494085		TCGA	RV	STAD	TCGA-CG-4477-01A	LUC7L2	chr7	139026268	+	SLC25A13	chr7	95906650	-
5UTR-3CDS	ENST00000329153	ENST00000347230		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
5UTR-3CDS	ENST00000329153	ENST00000557306		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
5UTR-intron	ENST00000329153	ENST00000555452		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
intron-3CDS	ENST00000417684	ENST00000347230		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
intron-3CDS	ENST00000417684	ENST00000557306		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
intron-intron	ENST00000417684	ENST00000555452		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
intron-3CDS	ENST00000559832	ENST00000347230		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
intron-3CDS	ENST00000559832	ENST00000557306		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
intron-intron	ENST00000559832	ENST00000555452		TCGA	RV	STAD	TCGA-BR-4357-01A	PLEKHH1	chr14	68000115	+	ZFYVE26	chr14	68221967	-
5UTR-3CDS	ENST00000378330	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-3CDS	ENST00000378330	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000378330	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000378330	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000378330	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000378330	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000378330	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-3CDS	ENST00000301030	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-3CDS	ENST00000301030	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000301030	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000301030	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000301030	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000301030	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
5UTR-intron	ENST00000301030	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-3CDS	ENST00000563291	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-3CDS	ENST00000563291	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000563291	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000563291	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000563291	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000563291	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000563291	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-3CDS	ENST00000567736	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-3CDS	ENST00000567736	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000567736	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000567736	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000567736	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000567736	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
intron-intron	ENST00000567736	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8485-01A	ANKRD11	chr16	89556653	-	FANCA	chr16	89849510	-
In-frame	ENST00000066544	ENST00000020926		TCGA	RV	STAD	TCGA-FP-8631-01A	CDC27	chr17	45266512	-	SYT13	chr11	45277442	-
In-frame	ENST00000531206	ENST00000020926		TCGA	RV	STAD	TCGA-FP-8631-01A	CDC27	chr17	45266512	-	SYT13	chr11	45277442	-
5UTR-3CDS	ENST00000446365	ENST00000020926		TCGA	RV	STAD	TCGA-FP-8631-01A	CDC27	chr17	45266512	-	SYT13	chr11	45277442	-
In-frame	ENST00000527547	ENST00000020926		TCGA	RV	STAD	TCGA-FP-8631-01A	CDC27	chr17	45266512	-	SYT13	chr11	45277442	-
intron-3CDS	ENST00000528748	ENST00000020926		TCGA	RV	STAD	TCGA-FP-8631-01A	CDC27	chr17	45266512	-	SYT13	chr11	45277442	-
Frame-shit	ENST00000262367	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000262367	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000262367	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000262367	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
5CDS-5UTR	ENST00000262367	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000382070	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000382070	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000382070	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000382070	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
5CDS-5UTR	ENST00000382070	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4475-01A	CREBBP	chr16	3900298	-	GLYR1	chr16	4882913	-
In-frame	ENST00000265036	ENST00000426742		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
In-frame	ENST00000265036	ENST00000265038		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000265036	ENST00000462279		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000265036	ENST00000543101		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
In-frame	ENST00000453022	ENST00000426742		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
In-frame	ENST00000453022	ENST00000265038		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000453022	ENST00000462279		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000453022	ENST00000543101		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5UTR-3CDS	ENST00000545085	ENST00000426742		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5UTR-3CDS	ENST00000545085	ENST00000265038		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5UTR-5UTR	ENST00000545085	ENST00000462279		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
5UTR-5UTR	ENST00000545085	ENST00000543101		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
intron-3CDS	ENST00000509006	ENST00000426742		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
intron-3CDS	ENST00000509006	ENST00000265038		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
intron-5UTR	ENST00000509006	ENST00000462279		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
intron-5UTR	ENST00000509006	ENST00000543101		TCGA	RV	STAD	TCGA-BR-7716-01A	DEPDC1B	chr5	59995873	-	ERCC8	chr5	60170510	-
In-frame	ENST00000251642	ENST00000309428		TCGA	RV	STAD	TCGA-BR-8487-01A	DHX58	chr17	40263314	-	FAM134C	chr17	40739882	-
In-frame	ENST00000251642	ENST00000585894		TCGA	RV	STAD	TCGA-BR-8487-01A	DHX58	chr17	40263314	-	FAM134C	chr17	40739882	-
5CDS-intron	ENST00000251642	ENST00000543197		TCGA	RV	STAD	TCGA-BR-8487-01A	DHX58	chr17	40263314	-	FAM134C	chr17	40739882	-
intron-3CDS	ENST00000437099	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000323816	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
In-frame	ENST00000432992	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
5UTR-3CDS	ENST00000540214	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000585266	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000580865	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000583882	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000542249	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000396115	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000579158	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000578655	ENST00000226207		TCGA	RV	STAD	TCGA-BR-4366-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
In-frame	ENST00000311127	ENST00000393469		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
In-frame	ENST00000311127	ENST00000423114		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
In-frame	ENST00000311127	ENST00000469902		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
In-frame	ENST00000311127	ENST00000314584		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
In-frame	ENST00000311127	ENST00000430155		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
5CDS-5UTR	ENST00000311127	ENST00000465475		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-3CDS	ENST00000477536	ENST00000393469		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-3CDS	ENST00000477536	ENST00000423114		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-3CDS	ENST00000477536	ENST00000469902		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-3CDS	ENST00000477536	ENST00000314584		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-3CDS	ENST00000477536	ENST00000430155		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-5UTR	ENST00000477536	ENST00000465475		TCGA	RV	STAD	TCGA-CG-4449-01A	HEG1	chr3	124774419	-	SLC12A8	chr3	124829179	-
intron-5UTR	ENST00000277817	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000277817	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000277817	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000277817	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000277817	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000412272	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000412272	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000412272	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000412272	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000412272	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395198	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395198	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395198	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395198	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395198	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000373700	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000373700	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000373700	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000373700	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000373700	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395187	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395187	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395187	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395187	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000395187	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000480158	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000480158	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000480158	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000480158	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
intron-5UTR	ENST00000480158	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000492996	ENST00000336578		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000492996	ENST00000358769		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000492996	ENST00000309049		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000492996	ENST00000432941		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
5CDS-5UTR	ENST00000492996	ENST00000495025		TCGA	RV	STAD	TCGA-D7-A4YY-01A	HERC4	chr10	69832640	-	PBLD	chr10	70056742	-
In-frame	ENST00000277817	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
In-frame	ENST00000277817	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-5UTR	ENST00000277817	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000277817	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000277817	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000277817	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000277817	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000412272	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000412272	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-5UTR	ENST00000412272	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000412272	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000412272	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000412272	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000412272	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000395198	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000395198	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-5UTR	ENST00000395198	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000395198	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000395198	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000395198	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000395198	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000373700	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000373700	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-5UTR	ENST00000373700	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000373700	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000373700	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000373700	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
5CDS-intron	ENST00000373700	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-3CDS	ENST00000395187	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-3CDS	ENST00000395187	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-5UTR	ENST00000395187	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-intron	ENST00000395187	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-intron	ENST00000395187	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-intron	ENST00000395187	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
3UTR-intron	ENST00000395187	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-3CDS	ENST00000480158	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-3CDS	ENST00000480158	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-5UTR	ENST00000480158	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000480158	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000480158	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000480158	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000480158	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-3CDS	ENST00000492996	ENST00000388768		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-3CDS	ENST00000492996	ENST00000602465		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-5UTR	ENST00000492996	ENST00000265865		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000492996	ENST00000399200		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000492996	ENST00000454950		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000492996	ENST00000472394		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
intron-intron	ENST00000492996	ENST00000342616		TCGA	RV	STAD	TCGA-BR-8373-01A	HERC4	chr10	69785303	-	RUFY2	chr10	70136729	-
Frame-shit	ENST00000356175	ENST00000321990		TCGA	RV	STAD	TCGA-BR-4357-01A	NF1	chr17	29422387	+	ATAD5	chr17	29203392	+
Frame-shit	ENST00000358273	ENST00000321990		TCGA	RV	STAD	TCGA-BR-4357-01A	NF1	chr17	29422387	+	ATAD5	chr17	29203392	+
Frame-shit	ENST00000431387	ENST00000321990		TCGA	RV	STAD	TCGA-BR-4357-01A	NF1	chr17	29422387	+	ATAD5	chr17	29203392	+
intron-3CDS	ENST00000581113	ENST00000321990		TCGA	RV	STAD	TCGA-BR-4357-01A	NF1	chr17	29422387	+	ATAD5	chr17	29203392	+
intron-3CDS	ENST00000417592	ENST00000321990		TCGA	RV	STAD	TCGA-BR-4357-01A	NF1	chr17	29422387	+	ATAD5	chr17	29203392	+
intron-3CDS	ENST00000444181	ENST00000321990		TCGA	RV	STAD	TCGA-BR-4357-01A	NF1	chr17	29422387	+	ATAD5	chr17	29203392	+
5CDS-3UTR	ENST00000406610	ENST00000413482		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000406610	ENST00000272847		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000462231	ENST00000413482		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000462231	ENST00000272847		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000349953	ENST00000413482		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000349953	ENST00000272847		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000358768	ENST00000413482		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000358768	ENST00000272847		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000351153	ENST00000413482		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5CDS-3UTR	ENST00000351153	ENST00000272847		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
intron-3UTR	ENST00000488622	ENST00000413482		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
intron-3UTR	ENST00000488622	ENST00000272847		TCGA	RV	STAD	TCGA-CD-8533-01A	PARD3B	chr2	205551005	+	PTH2R	chr2	209357989	+
5UTR-3CDS	ENST00000522684	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000522684	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000535192	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000535192	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000519465	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519465	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000517887	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517887	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000521059	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000521059	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000395218	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000395218	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000538769	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000538769	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000340930	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000340930	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000519419	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519419	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000430260	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000430260	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-3CDS	ENST00000519881	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
5UTR-intron	ENST00000519881	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000520892	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520892	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000519635	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000519635	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000517712	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000517712	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000522950	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000522950	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-3CDS	ENST00000520151	ENST00000518347		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000424248		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000262585		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000519811		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000518806		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
intron-intron	ENST00000520151	ENST00000523308		TCGA	RV	STAD	TCGA-CG-4443-01A	PTK2	chr8	142011224	-	DENND3	chr8	142146608	+
In-frame	ENST00000399799	ENST00000592179		TCGA	RV	STAD	TCGA-BR-8677-01A	ROCK1	chr18	18690779	-	ANKRD29	chr18	21229157	-
In-frame	ENST00000399799	ENST00000322980		TCGA	RV	STAD	TCGA-BR-8677-01A	ROCK1	chr18	18690779	-	ANKRD29	chr18	21229157	-
Frame-shit	ENST00000399799	ENST00000585908		TCGA	RV	STAD	TCGA-BR-8677-01A	ROCK1	chr18	18690779	-	ANKRD29	chr18	21229157	-
In-frame	ENST00000399799	ENST00000284207		TCGA	RV	STAD	TCGA-BR-8677-01A	ROCK1	chr18	18690779	-	ANKRD29	chr18	21229157	-
5CDS-intron	ENST00000399799	ENST00000586511		TCGA	RV	STAD	TCGA-BR-8677-01A	ROCK1	chr18	18690779	-	ANKRD29	chr18	21229157	-
intron-3CDS	ENST00000394420	ENST00000566157		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
intron-3CDS	ENST00000394420	ENST00000568397		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
intron-3UTR	ENST00000394420	ENST00000565209		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
5UTR-3CDS	ENST00000537866	ENST00000566157		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
5UTR-3CDS	ENST00000537866	ENST00000568397		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
5UTR-3UTR	ENST00000537866	ENST00000565209		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
intron-3CDS	ENST00000563073	ENST00000566157		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
intron-3CDS	ENST00000563073	ENST00000568397		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
intron-3UTR	ENST00000563073	ENST00000565209		TCGA	RV	STAD	TCGA-CG-4477-01A	RSPRY1	chr16	57220962	+	OGFOD1	chr16	56500064	+
In-frame	ENST00000369005	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000369005	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000513429	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000515273	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000515603	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000453444	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000358010	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000334433	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000369001	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000369000	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000360561	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000368999	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000369004	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000260733	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-intron	ENST00000493951	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8686-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3UTR	ENST00000468874	ENST00000497238		TCGA	RV	STAD	TCGA-BR-8679-01A	TMEM50B	chr21	34852145	-	TLX2	chr2	74741124	+
intron-intron	ENST00000468874	ENST00000233638		TCGA	RV	STAD	TCGA-BR-8679-01A	TMEM50B	chr21	34852145	-	TLX2	chr2	74741124	+
5UTR-3UTR	ENST00000542230	ENST00000497238		TCGA	RV	STAD	TCGA-BR-8679-01A	TMEM50B	chr21	34852145	-	TLX2	chr2	74741124	+
5UTR-intron	ENST00000542230	ENST00000233638		TCGA	RV	STAD	TCGA-BR-8679-01A	TMEM50B	chr21	34852145	-	TLX2	chr2	74741124	+
Frame-shit	ENST00000219473	ENST00000566620		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
Frame-shit	ENST00000219473	ENST00000268613		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000565636		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000431540		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000428848		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000567445		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000446376		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-intron	ENST00000219473	ENST00000569454		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-3CDS	ENST00000570191	ENST00000566620		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-3CDS	ENST00000570191	ENST00000268613		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-intron	ENST00000570191	ENST00000565636		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-intron	ENST00000570191	ENST00000431540		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-intron	ENST00000570191	ENST00000428848		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-intron	ENST00000570191	ENST00000567445		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-intron	ENST00000570191	ENST00000446376		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5UTR-intron	ENST00000570191	ENST00000569454		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-3CDS	ENST00000562743	ENST00000566620		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-3CDS	ENST00000562743	ENST00000268613		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000565636		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000431540		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000428848		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000567445		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000446376		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
3UTR-intron	ENST00000562743	ENST00000569454		TCGA	RV	STAD	TCGA-CG-4449-01A	USP10	chr16	84733717	+	CDH13	chr16	83781713	+
5CDS-5UTR	ENST00000446450	ENST00000414318		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000446450	ENST00000253692		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000446450	ENST00000429383		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000446450	ENST00000446818		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-intron	ENST00000446450	ENST00000429924		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000354956	ENST00000414318		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000354956	ENST00000253692		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000354956	ENST00000429383		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000354956	ENST00000446818		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-intron	ENST00000354956	ENST00000429924		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000354449	ENST00000414318		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000354449	ENST00000253692		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000354449	ENST00000429383		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-5UTR	ENST00000354449	ENST00000446818		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-intron	ENST00000354449	ENST00000429924		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000469654	ENST00000414318		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000469654	ENST00000253692		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000469654	ENST00000429383		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-5UTR	ENST00000469654	ENST00000446818		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
intron-intron	ENST00000469654	ENST00000429924		TCGA	RV	STAD	TCGA-CG-4304-01A	ATG7	chr3	11421526	+	TBC1D5	chr3	17209320	-
5CDS-intron	ENST00000358791	ENST00000417961		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000358791	ENST00000361573		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-5UTR	ENST00000358791	ENST00000541138		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000358791	ENST00000539601		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000358791	ENST00000490250		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000262591	ENST00000417961		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000262591	ENST00000361573		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-5UTR	ENST00000262591	ENST00000541138		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000262591	ENST00000539601		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000262591	ENST00000490250		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371608	ENST00000417961		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371608	ENST00000361573		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-5UTR	ENST00000371608	ENST00000541138		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371608	ENST00000539601		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000371608	ENST00000490250		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000609336	ENST00000417961		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000609336	ENST00000361573		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-5UTR	ENST00000609336	ENST00000541138		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000609336	ENST00000539601		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
5CDS-intron	ENST00000609336	ENST00000490250		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
3UTR-intron	ENST00000485049	ENST00000417961		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
3UTR-intron	ENST00000485049	ENST00000361573		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
3UTR-5UTR	ENST00000485049	ENST00000541138		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
3UTR-intron	ENST00000485049	ENST00000539601		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
3UTR-intron	ENST00000485049	ENST00000490250		TCGA	RV	STAD	TCGA-CG-4449-01A	BCAS4	chr20	49434819	+	SLC9A8	chr20	48481265	+
intron-3CDS	ENST00000277198	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-intron	ENST00000277198	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
In-frame	ENST00000297979	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
5CDS-intron	ENST00000297979	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
In-frame	ENST00000375315	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
5CDS-intron	ENST00000375315	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-3CDS	ENST00000395357	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-intron	ENST00000395357	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-3CDS	ENST00000425634	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-intron	ENST00000425634	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-3CDS	ENST00000433691	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-intron	ENST00000433691	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-3CDS	ENST00000473778	ENST00000375344		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
intron-intron	ENST00000473778	ENST00000428393		TCGA	RV	STAD	TCGA-VQ-A925-01A	C9orf3	chr9	97741709	+	HIATL1	chr9	97177440	+
In-frame	ENST00000361570	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
5CDS-intron	ENST00000361570	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000304494	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000304494	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
In-frame	ENST00000579755	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
5CDS-intron	ENST00000579755	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000579122	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000579122	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000578845	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000578845	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
In-frame	ENST00000530628	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
5CDS-intron	ENST00000530628	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000498124	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000498124	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000498628	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000498628	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000494262	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000494262	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000446177	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000446177	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000479692	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000479692	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000497750	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000497750	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-3CDS	ENST00000470819	ENST00000317357		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
intron-intron	ENST00000470819	ENST00000494935		TCGA	RV	STAD	TCGA-IN-A6RL-01A	CDKN2A	chr9	21994138	-	SOBP	chr6	107908284	+
In-frame	ENST00000354336	ENST00000398141		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	CRKL	chr22	21288532	+	HPS4	chr22	26873102	-
In-frame	ENST00000354336	ENST00000398145		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	CRKL	chr22	21288532	+	HPS4	chr22	26873102	-
In-frame	ENST00000354336	ENST00000402105		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	CRKL	chr22	21288532	+	HPS4	chr22	26873102	-
In-frame	ENST00000354336	ENST00000336873		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	CRKL	chr22	21288532	+	HPS4	chr22	26873102	-
5CDS-intron	ENST00000354336	ENST00000493455		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	CRKL	chr22	21288532	+	HPS4	chr22	26873102	-
5CDS-intron	ENST00000396821	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000396821	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000396821	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000444597	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000444597	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000444597	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381633	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381633	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000381633	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000432525	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000432525	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000432525	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8484-01A	DDX17	chr22	38879445	-	EIF2AK2	chr2	37342384	-
In-frame	ENST00000420323	ENST00000350061		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
In-frame	ENST00000420323	ENST00000288139		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
In-frame	ENST00000420323	ENST00000422281		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
5CDS-intron	ENST00000420323	ENST00000498251		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
5CDS-intron	ENST00000420323	ENST00000540742		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
5CDS-intron	ENST00000420323	ENST00000544977		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
intron-3CDS	ENST00000466628	ENST00000350061		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
intron-3CDS	ENST00000466628	ENST00000288139		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
intron-3CDS	ENST00000466628	ENST00000422281		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
intron-intron	ENST00000466628	ENST00000498251		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
intron-intron	ENST00000466628	ENST00000540742		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
intron-intron	ENST00000466628	ENST00000544977		TCGA	RV	STAD	TCGA-D7-A74A-01A	DNAH1	chr3	52418047	+	CACNA1D	chr3	53834276	+
Frame-shit	ENST00000414645	ENST00000302190		TCGA	RV	STAD	TCGA-CG-4304-01A	DPY19L4	chr8	95738669	+	SDC2	chr8	97605708	+
5CDS-intron	ENST00000414645	ENST00000520233		TCGA	RV	STAD	TCGA-CG-4304-01A	DPY19L4	chr8	95738669	+	SDC2	chr8	97605708	+
5CDS-intron	ENST00000414645	ENST00000518385		TCGA	RV	STAD	TCGA-CG-4304-01A	DPY19L4	chr8	95738669	+	SDC2	chr8	97605708	+
5CDS-5UTR	ENST00000414645	ENST00000522911		TCGA	RV	STAD	TCGA-CG-4304-01A	DPY19L4	chr8	95738669	+	SDC2	chr8	97605708	+
5CDS-5UTR	ENST00000414645	ENST00000519914		TCGA	RV	STAD	TCGA-CG-4304-01A	DPY19L4	chr8	95738669	+	SDC2	chr8	97605708	+
Frame-shit	ENST00000496972	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000496972	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000496972	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000496972	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000496972	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000405222	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000405222	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000405222	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000405222	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000405222	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000407661	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000407661	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407661	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407661	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407661	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000406818	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000406818	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000406818	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000406818	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000406818	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000407038	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000407038	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407038	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407038	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407038	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000404103	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000404103	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000404103	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000404103	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000404103	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000407186	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000407186	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407186	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407186	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000407186	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000288642	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000288642	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000288642	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000288642	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000288642	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000545439	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
Frame-shit	ENST00000545439	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000545439	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000545439	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000545439	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
intron-3CDS	ENST00000472690	ENST00000435504		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
intron-3CDS	ENST00000472690	ENST00000336112		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
intron-5UTR	ENST00000472690	ENST00000272341		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
intron-5UTR	ENST00000472690	ENST00000404843		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
intron-5UTR	ENST00000472690	ENST00000497092		TCGA	RV	STAD	TCGA-BR-4357-01A	DTNB	chr2	25754342	-	ASXL2	chr2	25994409	-
5CDS-5UTR	ENST00000588577	ENST00000428869		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000588577	ENST00000431965		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000588577	ENST00000256425		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000588577	ENST00000588444		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000588577	ENST00000436348		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000588577	ENST00000398439		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000588577	ENST00000587291		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000269466	ENST00000428869		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000269466	ENST00000431965		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000269466	ENST00000256425		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000269466	ENST00000588444		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000269466	ENST00000436348		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000269466	ENST00000398439		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000269466	ENST00000587291		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000591429	ENST00000428869		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000591429	ENST00000431965		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000591429	ENST00000256425		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000591429	ENST00000588444		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000591429	ENST00000436348		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-5UTR	ENST00000591429	ENST00000398439		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000591429	ENST00000587291		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-5UTR	ENST00000586966	ENST00000428869		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-intron	ENST00000586966	ENST00000431965		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-5UTR	ENST00000586966	ENST00000256425		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-5UTR	ENST00000586966	ENST00000588444		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-intron	ENST00000586966	ENST00000436348		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-5UTR	ENST00000586966	ENST00000398439		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
intron-intron	ENST00000586966	ENST00000587291		TCGA	RV	STAD	TCGA-BR-4371-01A	ELAC1	chr18	48510933	+	MRO	chr18	48335774	-
5CDS-intron	ENST00000306376	ENST00000447054		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000306376	ENST00000265022		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000306376	ENST00000344484		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000306376	ENST00000382164		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000306376	ENST00000544847		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000434744	ENST00000447054		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000434744	ENST00000265022		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000434744	ENST00000344484		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000434744	ENST00000382164		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000434744	ENST00000544847		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000537818	ENST00000447054		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000537818	ENST00000265022		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000537818	ENST00000344484		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000537818	ENST00000382164		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
5CDS-intron	ENST00000537818	ENST00000544847		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
intron-intron	ENST00000480706	ENST00000447054		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
intron-intron	ENST00000480706	ENST00000265022		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
intron-intron	ENST00000480706	ENST00000344484		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
intron-intron	ENST00000480706	ENST00000382164		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
intron-intron	ENST00000480706	ENST00000544847		TCGA	RV	STAD	TCGA-BR-4357-01A	ETV5	chr3	185797606	-	DGKG	chr3	185929674	-
intron-intron	ENST00000360319	ENST00000233057		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000360319	ENST00000395127		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000360319	ENST00000405334		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000422373	ENST00000233057		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000422373	ENST00000395127		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000422373	ENST00000405334		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000369850	ENST00000233057		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000369850	ENST00000395127		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000369850	ENST00000405334		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000369856	ENST00000233057		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000369856	ENST00000395127		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000369856	ENST00000405334		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000344736	ENST00000233057		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000344736	ENST00000395127		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000344736	ENST00000405334		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000498491	ENST00000233057		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000498491	ENST00000395127		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000498491	ENST00000405334		TCGA	RV	STAD	TCGA-BR-A44T-01A	FLNA	chrX	153576900	-	EIF2AK2	chr2	37342384	-
5UTR-3CDS	ENST00000299293	ENST00000451516		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000299293	ENST00000334414		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000299293	ENST00000550358		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000299293	ENST00000538708		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000299293	ENST00000550857		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000299293	ENST00000261266		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000299293	ENST00000551525		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-5UTR	ENST00000299293	ENST00000538174		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000451516		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000334414		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000550358		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000538708		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000550857		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000261266		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000549921	ENST00000551525		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-5UTR	ENST00000549921	ENST00000538174		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000451516		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000334414		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000550358		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000538708		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000550857		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000261266		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-3CDS	ENST00000550389	ENST00000551525		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5UTR-5UTR	ENST00000550389	ENST00000538174		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000451516		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000334414		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000550358		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000538708		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000550857		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000261266		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-3CDS	ENST00000397997	ENST00000551525		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
intron-5UTR	ENST00000397997	ENST00000538174		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PTPRB	chr12	71003119	-
5CDS-5UTR	ENST00000503238	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000503238	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000503238	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000503238	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000503238	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000358350	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000358350	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000358350	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000358350	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000358350	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000537810	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000537810	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000537810	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000537810	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000537810	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5UTR-5UTR	ENST00000264319	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5UTR-5UTR	ENST00000264319	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5UTR-intron	ENST00000264319	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5UTR-5UTR	ENST00000264319	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5UTR-intron	ENST00000264319	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000507711	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000507711	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000507711	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-5UTR	ENST00000507711	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
5CDS-intron	ENST00000507711	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000514783	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000514783	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000514783	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000514783	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000514783	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000507873	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000507873	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000507873	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000507873	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000507873	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000506685	ENST00000416284		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000506685	ENST00000551619		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000506685	ENST00000550003		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000506685	ENST00000551449		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-intron	ENST00000506685	ENST00000549456		TCGA	RV	STAD	TCGA-CG-4476-01A	FRYL	chr4	48636308	-	FAM19A2	chr12	62261207	-
intron-5UTR	ENST00000528712	ENST00000372292		TCGA	RV	STAD	TCGA-VQ-A91N-01A	GATA4	chr8	11561813	+	SFTPD	chr10	81706418	-
5UTR-5UTR	ENST00000335135	ENST00000372292		TCGA	RV	STAD	TCGA-VQ-A91N-01A	GATA4	chr8	11561813	+	SFTPD	chr10	81706418	-
intron-5UTR	ENST00000532059	ENST00000372292		TCGA	RV	STAD	TCGA-VQ-A91N-01A	GATA4	chr8	11561813	+	SFTPD	chr10	81706418	-
In-frame	ENST00000287996	ENST00000395505		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
In-frame	ENST00000287996	ENST00000395506		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
In-frame	ENST00000287996	ENST00000375495		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
5CDS-5UTR	ENST00000287996	ENST00000332591		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-3CDS	ENST00000486841	ENST00000395505		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-3CDS	ENST00000486841	ENST00000395506		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-3CDS	ENST00000486841	ENST00000375495		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-5UTR	ENST00000486841	ENST00000332591		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-3CDS	ENST00000375522	ENST00000395505		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-3CDS	ENST00000375522	ENST00000395506		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-3CDS	ENST00000375522	ENST00000375495		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
intron-5UTR	ENST00000375522	ENST00000332591		TCGA	RV	STAD	TCGA-BR-8361-01A	IPPK	chr9	95432190	-	ZNF484	chr9	95618600	-
5CDS-3UTR	ENST00000268182	ENST00000550317		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000268182	ENST00000545036		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000268182	ENST00000308208		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000268182	ENST00000552694		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000560738	ENST00000550317		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000560738	ENST00000545036		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000560738	ENST00000308208		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
5CDS-3UTR	ENST00000560738	ENST00000552694		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
intron-3UTR	ENST00000560020	ENST00000550317		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
intron-3UTR	ENST00000560020	ENST00000545036		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
intron-3UTR	ENST00000560020	ENST00000308208		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
intron-3UTR	ENST00000560020	ENST00000552694		TCGA	RV	STAD	TCGA-CG-4477-01A	IQGAP1	chr15	90931628	+	CCDC63	chr12	111311646	+
In-frame	ENST00000268182	ENST00000379122		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
In-frame	ENST00000268182	ENST00000332496		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000560263		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000411539		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000379122		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000332496		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000560263		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000411539		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000379122		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000332496		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000560263		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000411539		TCGA	RV	STAD	TCGA-CG-4442-01A	IQGAP1	chr15	90982631	+	SEMA4B	chr15	90760671	+
In-frame	ENST00000326639	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
In-frame	ENST00000264584	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
In-frame	ENST00000441387	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
5UTR-3CDS	ENST00000354456	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
intron-3CDS	ENST00000506199	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
In-frame	ENST00000512292	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
In-frame	ENST00000394288	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
Frame-shit	ENST00000432347	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
In-frame	ENST00000427266	ENST00000281154		TCGA	RV	STAD	TCGA-BR-8590-01A	LARP1B	chr4	129028468	+	SLC25A31	chr4	128665827	+
In-frame	ENST00000356175	ENST00000321990		TCGA	RV	STAD	TCGA-CG-4440-01A	NF1	chr17	29533389	+	ATAD5	chr17	29161166	+
In-frame	ENST00000358273	ENST00000321990		TCGA	RV	STAD	TCGA-CG-4440-01A	NF1	chr17	29533389	+	ATAD5	chr17	29161166	+
In-frame	ENST00000431387	ENST00000321990		TCGA	RV	STAD	TCGA-CG-4440-01A	NF1	chr17	29533389	+	ATAD5	chr17	29161166	+
intron-3CDS	ENST00000581113	ENST00000321990		TCGA	RV	STAD	TCGA-CG-4440-01A	NF1	chr17	29533389	+	ATAD5	chr17	29161166	+
intron-3CDS	ENST00000417592	ENST00000321990		TCGA	RV	STAD	TCGA-CG-4440-01A	NF1	chr17	29533389	+	ATAD5	chr17	29161166	+
intron-3CDS	ENST00000444181	ENST00000321990		TCGA	RV	STAD	TCGA-CG-4440-01A	NF1	chr17	29533389	+	ATAD5	chr17	29161166	+
5UTR-5UTR	ENST00000372891	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
5UTR-5UTR	ENST00000372894	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
5UTR-5UTR	ENST00000372892	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
5UTR-5UTR	ENST00000372889	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
5UTR-5UTR	ENST00000372887	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
5UTR-5UTR	ENST00000372882	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
intron-5UTR	ENST00000477390	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
intron-5UTR	ENST00000372886	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
intron-5UTR	ENST00000349959	ENST00000335524		TCGA	RV	STAD	TCGA-BR-A452-01A	PKIG	chr20	43160619	+	C2orf53	chr2	27361890	-
5CDS-5UTR	ENST00000360453	ENST00000505432		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000360453	ENST00000261796		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000394320	ENST00000505432		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000394320	ENST00000261796		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
intron-5UTR	ENST00000461780	ENST00000505432		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
intron-5UTR	ENST00000461780	ENST00000261796		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000309241	ENST00000505432		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000309241	ENST00000261796		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000403750	ENST00000505432		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
5CDS-5UTR	ENST00000403750	ENST00000261796		TCGA	RV	STAD	TCGA-BR-8485-01A	PPARGC1B	chr5	149206448	+	IL17B	chr5	148756588	-
Frame-shit	ENST00000409792	ENST00000254480		TCGA	RV	STAD	TCGA-CG-4449-01A	SETD2	chr3	47205344	-	SMARCC1	chr3	47632327	-
5CDS-5UTR	ENST00000409792	ENST00000425518		TCGA	RV	STAD	TCGA-CG-4449-01A	SETD2	chr3	47205344	-	SMARCC1	chr3	47632327	-
intron-3CDS	ENST00000492397	ENST00000254480		TCGA	RV	STAD	TCGA-CG-4449-01A	SETD2	chr3	47205344	-	SMARCC1	chr3	47632327	-
intron-5UTR	ENST00000492397	ENST00000425518		TCGA	RV	STAD	TCGA-CG-4449-01A	SETD2	chr3	47205344	-	SMARCC1	chr3	47632327	-
5UTR-5UTR	ENST00000240095	ENST00000356766		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000240095	ENST00000521356		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000240095	ENST00000454009		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000359741	ENST00000356766		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000359741	ENST00000521356		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000359741	ENST00000454009		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000381237	ENST00000356766		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000381237	ENST00000521356		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
5UTR-5UTR	ENST00000381237	ENST00000454009		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
intron-5UTR	ENST00000289952	ENST00000356766		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
intron-5UTR	ENST00000289952	ENST00000521356		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
intron-5UTR	ENST00000289952	ENST00000454009		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC39A14	chr8	22224921	+	PIWIL2	chr8	22136854	+
Frame-shit	ENST00000216484	ENST00000261531		TCGA	RV	STAD	TCGA-CG-4443-01A	SPTLC2	chr14	78018439	-	SNW1	chr14	78205404	-
5CDS-intron	ENST00000216484	ENST00000554775		TCGA	RV	STAD	TCGA-CG-4443-01A	SPTLC2	chr14	78018439	-	SNW1	chr14	78205404	-
5CDS-intron	ENST00000216484	ENST00000555761		TCGA	RV	STAD	TCGA-CG-4443-01A	SPTLC2	chr14	78018439	-	SNW1	chr14	78205404	-
intron-3CDS	ENST00000556264	ENST00000261531		TCGA	RV	STAD	TCGA-CG-4443-01A	SPTLC2	chr14	78018439	-	SNW1	chr14	78205404	-
intron-intron	ENST00000556264	ENST00000554775		TCGA	RV	STAD	TCGA-CG-4443-01A	SPTLC2	chr14	78018439	-	SNW1	chr14	78205404	-
intron-intron	ENST00000556264	ENST00000555761		TCGA	RV	STAD	TCGA-CG-4443-01A	SPTLC2	chr14	78018439	-	SNW1	chr14	78205404	-
3UTR-3CDS	ENST00000570827	ENST00000343433		TCGA	RV	STAD	TCGA-D7-8578-01A	USP43	chr17	9586275	+	C1orf168	chr1	57186002	-
3UTR-intron	ENST00000570827	ENST00000484327		TCGA	RV	STAD	TCGA-D7-8578-01A	USP43	chr17	9586275	+	C1orf168	chr1	57186002	-
Frame-shit	ENST00000570475	ENST00000343433		TCGA	RV	STAD	TCGA-D7-8578-01A	USP43	chr17	9586275	+	C1orf168	chr1	57186002	-
5CDS-intron	ENST00000570475	ENST00000484327		TCGA	RV	STAD	TCGA-D7-8578-01A	USP43	chr17	9586275	+	C1orf168	chr1	57186002	-
Frame-shit	ENST00000285199	ENST00000343433		TCGA	RV	STAD	TCGA-D7-8578-01A	USP43	chr17	9586275	+	C1orf168	chr1	57186002	-
5CDS-intron	ENST00000285199	ENST00000484327		TCGA	RV	STAD	TCGA-D7-8578-01A	USP43	chr17	9586275	+	C1orf168	chr1	57186002	-
Frame-shit	ENST00000437079	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000437079	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000437079	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000437079	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
Frame-shit	ENST00000287546	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000287546	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000287546	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000287546	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
Frame-shit	ENST00000436792	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000436792	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000436792	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000436792	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
Frame-shit	ENST00000446204	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000446204	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000446204	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000446204	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-3CDS	ENST00000424463	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000424463	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000424463	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000424463	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-3CDS	ENST00000463687	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000463687	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000463687	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000463687	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184573606	+	EHHADH	chr3	184966305	-
In-frame	ENST00000400602	ENST00000400590		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000400602	ENST00000320220		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000400602	ENST00000382466		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000400602	ENST00000542645		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000400602	ENST00000415724		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000400602	ENST00000422251		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
5CDS-5UTR	ENST00000400602	ENST00000494731		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000255305	ENST00000400590		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000255305	ENST00000320220		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000255305	ENST00000382466		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000255305	ENST00000542645		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000255305	ENST00000415724		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000255305	ENST00000422251		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
5CDS-5UTR	ENST00000255305	ENST00000494731		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
Frame-shit	ENST00000490513	ENST00000400590		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
Frame-shit	ENST00000490513	ENST00000320220		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
Frame-shit	ENST00000490513	ENST00000382466		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
Frame-shit	ENST00000490513	ENST00000542645		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
Frame-shit	ENST00000490513	ENST00000415724		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
Frame-shit	ENST00000490513	ENST00000422251		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
5CDS-5UTR	ENST00000490513	ENST00000494731		TCGA	RV	STAD	TCGA-BR-4357-01A	XPO4	chr13	21429766	-	ZDHHC20	chr13	21987911	-
In-frame	ENST00000341885	ENST00000373484		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
In-frame	ENST00000341885	ENST00000409190		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
In-frame	ENST00000468695	ENST00000373484		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
In-frame	ENST00000468695	ENST00000409190		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
5UTR-3CDS	ENST00000492007	ENST00000373484		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
5UTR-3CDS	ENST00000492007	ENST00000409190		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
In-frame	ENST00000373501	ENST00000373484		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
In-frame	ENST00000373501	ENST00000409190		TCGA	RV	STAD	TCGA-CD-A487-01A	ZBTB8OS	chr1	33116034	-	SYNC	chr1	33149983	-
Frame-shit	ENST00000338008	ENST00000358731		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
In-frame	ENST00000338008	ENST00000380675		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
Frame-shit	ENST00000510158	ENST00000358731		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
In-frame	ENST00000510158	ENST00000380675		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
Frame-shit	ENST00000505560	ENST00000358731		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
In-frame	ENST00000505560	ENST00000380675		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
intron-3CDS	ENST00000512442	ENST00000358731		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
intron-3CDS	ENST00000512442	ENST00000380675		TCGA	RV	STAD	TCGA-CG-4449-01A	ZFYVE16	chr5	79735851	+	BDP1	chr5	70848943	+
5CDS-intron	ENST00000257963	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000257963	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000541224	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000541224	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000426655	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000426655	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000415850	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000415850	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000542485	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000542485	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000563121	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000563121	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8680-01A	ACVR1B	chr12	52390862	+	SUPT16H	chr14	21829491	-
Frame-shit	ENST00000339594	ENST00000414749		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000339594	ENST00000429400		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000339594	ENST00000395189		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000339594	ENST00000313375		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000339594	ENST00000354613		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000339594	ENST00000434326		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000404251	ENST00000414749		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000404251	ENST00000429400		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000404251	ENST00000395189		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000404251	ENST00000313375		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000404251	ENST00000354613		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000404251	ENST00000434326		TCGA	RV	STAD	TCGA-CG-4443-01A	BAZ1B	chr7	72903524	-	MLXIPL	chr7	73030507	-
Frame-shit	ENST00000334126	ENST00000340360		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000334126	ENST00000321448		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000334126	ENST00000527087		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000334126	ENST00000533598		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000313663	ENST00000340360		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000313663	ENST00000321448		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000313663	ENST00000527087		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000313663	ENST00000533598		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000542452	ENST00000340360		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000542452	ENST00000321448		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
intron-3CDS	ENST00000542452	ENST00000527087		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
intron-intron	ENST00000542452	ENST00000533598		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000539061	ENST00000340360		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000539061	ENST00000321448		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
Frame-shit	ENST00000539061	ENST00000527087		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
5CDS-intron	ENST00000539061	ENST00000533598		TCGA	RV	STAD	TCGA-CG-4449-01A	C2CD3	chr11	73879389	-	XRRA1	chr11	74559507	-
5UTR-5UTR	ENST00000377022	ENST00000328089		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
5UTR-5UTR	ENST00000377022	ENST00000357898		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
5UTR-5UTR	ENST00000377022	ENST00000377399		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
5UTR-5UTR	ENST00000344008	ENST00000328089		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
5UTR-5UTR	ENST00000344008	ENST00000357898		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
5UTR-5UTR	ENST00000344008	ENST00000377399		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
intron-5UTR	ENST00000478728	ENST00000328089		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
intron-5UTR	ENST00000478728	ENST00000357898		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
intron-5UTR	ENST00000478728	ENST00000377399		TCGA	RV	STAD	TCGA-BR-4367-01A	CASZ1	chr1	10820758	-	SPSB1	chr1	9415802	+
intron-3CDS	ENST00000395290	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395290	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395290	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395290	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395290	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-intron	ENST00000395290	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000358597	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000358597	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000358597	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000358597	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000358597	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-intron	ENST00000358597	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395292	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395292	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395292	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395292	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000395292	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-intron	ENST00000395292	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000310513	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000310513	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000310513	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000310513	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000310513	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-intron	ENST00000310513	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000361904	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000361904	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000361904	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000361904	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000361904	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-intron	ENST00000361904	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000539455	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000539455	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000539455	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000539455	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000539455	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-intron	ENST00000539455	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000531165	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000531165	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000531165	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000531165	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-3CDS	ENST00000531165	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
5UTR-intron	ENST00000531165	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000532048	ENST00000526005		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000532048	ENST00000533290		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000532048	ENST00000395288		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000532048	ENST00000430070		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-3CDS	ENST00000532048	ENST00000525720		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
intron-intron	ENST00000532048	ENST00000450908		TCGA	RV	STAD	TCGA-BR-A452-01A	CELF1	chr11	47574544	-	KBTBD4	chr11	47597251	-
Frame-shit	ENST00000397901	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
Frame-shit	ENST00000397901	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000397901	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000397901	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000397901	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000397901	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000397901	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-3CDS	ENST00000253475	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-3CDS	ENST00000253475	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000253475	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000253475	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000253475	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000253475	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000253475	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-3CDS	ENST00000535997	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-3CDS	ENST00000535997	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000535997	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000535997	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000535997	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000535997	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000535997	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
Frame-shit	ENST00000550102	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
Frame-shit	ENST00000550102	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000550102	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000550102	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000550102	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000550102	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5CDS-intron	ENST00000550102	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-3CDS	ENST00000547614	ENST00000389301		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-3CDS	ENST00000547614	ENST00000568369		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000547614	ENST00000567284		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000547614	ENST00000389302		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000547614	ENST00000563673		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000547614	ENST00000534992		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
intron-intron	ENST00000547614	ENST00000543736		TCGA	RV	STAD	TCGA-BR-8590-01A	CHMP1A	chr16	89720312	-	FANCA	chr16	89833645	-
5UTR-3CDS	ENST00000361168	ENST00000608999		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3CDS	ENST00000361168	ENST00000336894		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-intron	ENST00000361168	ENST00000480184		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-intron	ENST00000361168	ENST00000356764		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3UTR	ENST00000361168	ENST00000290419		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-5UTR	ENST00000361168	ENST00000391959		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-5UTR	ENST00000361168	ENST00000367270		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3CDS	ENST00000368361	ENST00000608999		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3CDS	ENST00000368361	ENST00000336894		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-intron	ENST00000368361	ENST00000480184		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-intron	ENST00000368361	ENST00000356764		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3UTR	ENST00000368361	ENST00000290419		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-5UTR	ENST00000368361	ENST00000391959		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-5UTR	ENST00000368361	ENST00000367270		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3CDS	ENST00000355560	ENST00000608999		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3CDS	ENST00000355560	ENST00000336894		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-intron	ENST00000355560	ENST00000480184		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-intron	ENST00000355560	ENST00000356764		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-3UTR	ENST00000355560	ENST00000290419		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-5UTR	ENST00000355560	ENST00000391959		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
5UTR-5UTR	ENST00000355560	ENST00000367270		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000497188	ENST00000608999		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000497188	ENST00000336894		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000497188	ENST00000480184		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000497188	ENST00000356764		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3UTR	ENST00000497188	ENST00000290419		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000497188	ENST00000391959		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000497188	ENST00000367270		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000536801	ENST00000608999		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000536801	ENST00000336894		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000536801	ENST00000480184		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-intron	ENST00000536801	ENST00000356764		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3UTR	ENST00000536801	ENST00000290419		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000536801	ENST00000391959		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-5UTR	ENST00000536801	ENST00000367270		TCGA	RV	STAD	TCGA-HU-8610-01A	CLK2	chr1	155242992	-	PPP1R12B	chr1	202457661	+
intron-3CDS	ENST00000598494	ENST00000292123		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3CDS	ENST00000598494	ENST00000592224		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3UTR	ENST00000598494	ENST00000586934		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3UTR	ENST00000598494	ENST00000454510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-5UTR	ENST00000598494	ENST00000433404		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-5UTR	ENST00000598494	ENST00000588852		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-5UTR	ENST00000598494	ENST00000538656		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3CDS	ENST00000600229	ENST00000292123		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3CDS	ENST00000600229	ENST00000592224		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3UTR	ENST00000600229	ENST00000586934		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3UTR	ENST00000600229	ENST00000454510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-5UTR	ENST00000600229	ENST00000433404		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-5UTR	ENST00000600229	ENST00000588852		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-5UTR	ENST00000600229	ENST00000538656		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3CDS	ENST00000356762	ENST00000292123		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3CDS	ENST00000356762	ENST00000592224		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3UTR	ENST00000356762	ENST00000586934		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-3UTR	ENST00000356762	ENST00000454510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-5UTR	ENST00000356762	ENST00000433404		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-5UTR	ENST00000356762	ENST00000588852		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
5UTR-5UTR	ENST00000356762	ENST00000538656		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3CDS	ENST00000308243	ENST00000292123		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3CDS	ENST00000308243	ENST00000592224		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3UTR	ENST00000308243	ENST00000586934		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-3UTR	ENST00000308243	ENST00000454510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-5UTR	ENST00000308243	ENST00000433404		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-5UTR	ENST00000308243	ENST00000588852		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
intron-5UTR	ENST00000308243	ENST00000538656		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CRB3	chr19	6464361	+	SAFB	chr19	5626416	+
Frame-shit	ENST00000287647	ENST00000353332		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000287647	ENST00000420925		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000287647	ENST00000296003		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000287647	ENST00000351233		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
Frame-shit	ENST00000383807	ENST00000353332		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000383807	ENST00000420925		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000383807	ENST00000296003		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000383807	ENST00000351233		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
Frame-shit	ENST00000383806	ENST00000353332		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000383806	ENST00000420925		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000383806	ENST00000296003		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000383806	ENST00000351233		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
Frame-shit	ENST00000419585	ENST00000353332		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000419585	ENST00000420925		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000419585	ENST00000296003		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
5CDS-intron	ENST00000419585	ENST00000351233		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-3CDS	ENST00000431693	ENST00000353332		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-intron	ENST00000431693	ENST00000420925		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-intron	ENST00000431693	ENST00000296003		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-intron	ENST00000431693	ENST00000351233		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-3CDS	ENST00000438741	ENST00000353332		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-intron	ENST00000438741	ENST00000420925		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-intron	ENST00000438741	ENST00000296003		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-intron	ENST00000438741	ENST00000351233		TCGA	RV	STAD	TCGA-BR-8060-01A	FANCD2	chr3	10094181	+	MTMR14	chr3	9703951	+
intron-3CDS	ENST00000476233	ENST00000263593		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
intron-intron	ENST00000476233	ENST00000545756		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
intron-intron	ENST00000476233	ENST00000525730		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000354667	ENST00000263593		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
intron-intron	ENST00000354667	ENST00000545756		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
intron-intron	ENST00000354667	ENST00000525730		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
In-frame	ENST00000356674	ENST00000263593		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000356674	ENST00000545756		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000356674	ENST00000525730		TCGA	RV	STAD	TCGA-HU-8610-01A	HNRNPA2B1	chr7	26231464	-	SIAE	chr11	124543777	-
Frame-shit	ENST00000296181	ENST00000393469		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
Frame-shit	ENST00000296181	ENST00000423114		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
Frame-shit	ENST00000296181	ENST00000469902		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
5CDS-5UTR	ENST00000296181	ENST00000314584		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
5CDS-intron	ENST00000296181	ENST00000430155		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
5CDS-intron	ENST00000296181	ENST00000465475		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
intron-3CDS	ENST00000461306	ENST00000393469		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
intron-3CDS	ENST00000461306	ENST00000423114		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
intron-3CDS	ENST00000461306	ENST00000469902		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
intron-5UTR	ENST00000461306	ENST00000314584		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
intron-intron	ENST00000461306	ENST00000430155		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
intron-intron	ENST00000461306	ENST00000465475		TCGA	RV	STAD	TCGA-BR-4357-01A	ITGB5	chr3	124536468	-	SLC12A8	chr3	124854626	-
5CDS-5UTR	ENST00000293404	ENST00000360085		TCGA	RV	STAD	TCGA-VQ-A925-01A	NAGS	chr17	42082457	+	PYY	chr17	42043900	-
5CDS-intron	ENST00000293404	ENST00000592796		TCGA	RV	STAD	TCGA-VQ-A925-01A	NAGS	chr17	42082457	+	PYY	chr17	42043900	-
Frame-shit	ENST00000357575	ENST00000353265		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000357575	ENST00000470488		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000397778	ENST00000353265		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000397778	ENST00000470488		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000409073	ENST00000353265		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000409073	ENST00000470488		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000590381	ENST00000353265		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000590381	ENST00000470488		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000590895	ENST00000353265		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000590895	ENST00000470488		TCGA	RV	STAD	TCGA-BR-4366-01A	PQLC1	chr18	77703329	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000431726	ENST00000296142		TCGA	RV	STAD	TCGA-BR-4357-01A	PTPN23	chr3	47437707	+	RTP3	chr3	46541846	+
Frame-shit	ENST00000265562	ENST00000296142		TCGA	RV	STAD	TCGA-BR-4357-01A	PTPN23	chr3	47437707	+	RTP3	chr3	46541846	+
In-frame	ENST00000393386	ENST00000393486		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
In-frame	ENST00000393386	ENST00000257724		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
5CDS-intron	ENST00000393386	ENST00000448022		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
5CDS-intron	ENST00000393386	ENST00000423503		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
In-frame	ENST00000449182	ENST00000393486		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
In-frame	ENST00000449182	ENST00000257724		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
5CDS-intron	ENST00000449182	ENST00000448022		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
5CDS-intron	ENST00000449182	ENST00000423503		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
intron-3CDS	ENST00000483028	ENST00000393486		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
intron-3CDS	ENST00000483028	ENST00000257724		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
intron-intron	ENST00000483028	ENST00000448022		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
intron-intron	ENST00000483028	ENST00000423503		TCGA	RV	STAD	TCGA-D7-8576-01A	PTPRZ1	chr7	121608184	+	MDFIC	chr7	114582330	+
intron-intron	ENST00000378518	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8679-01A	RER1	chr1	2335188	+	DDX21	chr10	70723858	+
3UTR-intron	ENST00000605895	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8679-01A	RER1	chr1	2335188	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000378513	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8679-01A	RER1	chr1	2335188	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000378512	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8679-01A	RER1	chr1	2335188	+	DDX21	chr10	70723858	+
intron-intron	ENST00000488353	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8679-01A	RER1	chr1	2335188	+	DDX21	chr10	70723858	+
In-frame	ENST00000262878	ENST00000534862		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000262878	ENST00000538448		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000262878	ENST00000375862		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000262878	ENST00000520553		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000262878	ENST00000518730		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5CDS-5UTR	ENST00000262878	ENST00000375852		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-3CDS	ENST00000373694	ENST00000534862		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000373694	ENST00000538448		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000373694	ENST00000375862		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000373694	ENST00000520553		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000373694	ENST00000518730		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-5UTR	ENST00000373694	ENST00000375852		TCGA	RV	STAD	TCGA-CG-4443-01A	SAMHD1	chr20	35563432	-	HCK	chr20	30659465	+
5UTR-3CDS	ENST00000358161	ENST00000373247		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000358161	ENST00000373245		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000358161	ENST00000393706		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3UTR	ENST00000358161	ENST00000460181		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-5UTR	ENST00000358161	ENST00000373225		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000372739	ENST00000373247		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000372739	ENST00000373245		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000372739	ENST00000393706		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3UTR	ENST00000372739	ENST00000460181		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-5UTR	ENST00000372739	ENST00000373225		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000372731	ENST00000373247		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000372731	ENST00000373245		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3CDS	ENST00000372731	ENST00000393706		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-3UTR	ENST00000372731	ENST00000460181		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5UTR-5UTR	ENST00000372731	ENST00000373225		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
intron-3CDS	ENST00000475367	ENST00000373247		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
intron-3CDS	ENST00000475367	ENST00000373245		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
intron-3CDS	ENST00000475367	ENST00000393706		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
intron-3UTR	ENST00000475367	ENST00000460181		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
intron-5UTR	ENST00000475367	ENST00000373225		TCGA	RV	STAD	TCGA-IN-A6RN-01A	SPTAN1	chr9	131314975	+	FPGS	chr9	130566564	+
5CDS-intron	ENST00000295702	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000295702	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000529008	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000529008	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000496742	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000496742	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000480567	ENST00000216297		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000480567	ENST00000555943		TCGA	RV	STAD	TCGA-BR-8687-01A	SSR2	chr1	155978839	-	SUPT16H	chr14	21829491	-
In-frame	ENST00000438423	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000438423	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000438423	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000438423	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000438423	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000438423	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-intron	ENST00000438423	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000438423	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000438423	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000438423	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000267811	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000267811	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000267811	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000267811	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000267811	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000267811	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-intron	ENST00000267811	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000267811	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000267811	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000267811	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000452095	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000452095	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000452095	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000452095	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000452095	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000452095	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-intron	ENST00000452095	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000452095	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000452095	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000452095	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000333725	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000333725	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000333725	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000333725	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000333725	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000333725	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-intron	ENST00000333725	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000333725	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000333725	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000333725	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000557843	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000557843	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000557843	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
In-frame	ENST00000557843	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000557843	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000557843	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-intron	ENST00000557843	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000557843	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000557843	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000557843	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000560764	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000560764	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000560764	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000560764	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000560764	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000560764	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-intron	ENST00000560764	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000560764	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000560764	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000560764	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000543579	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000543579	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000543579	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000543579	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000543579	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000543579	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-intron	ENST00000543579	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000543579	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000543579	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000543579	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000537840	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000537840	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000537840	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000537840	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000537840	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000537840	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-intron	ENST00000537840	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000537840	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000537840	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000537840	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000343827	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000343827	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000343827	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000343827	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000343827	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000343827	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-intron	ENST00000343827	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000343827	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000343827	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000343827	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559710	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559710	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559710	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559710	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559710	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559710	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-intron	ENST00000559710	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559710	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559710	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559710	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559703	ENST00000425933		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559703	ENST00000543599		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559703	ENST00000329082		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000559703	ENST00000542321		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559703	ENST00000538818		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559703	ENST00000557301		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-intron	ENST00000559703	ENST00000557420		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559703	ENST00000556658		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559703	ENST00000556087		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000559703	ENST00000555584		TCGA	RV	STAD	TCGA-CG-4304-01A	TCF12	chr15	57384089	+	RGMA	chr15	93595737	-
5UTR-5UTR	ENST00000358409	ENST00000227155		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000358409	ENST00000342935		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-intron	ENST00000358409	ENST00000530931		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000359864	ENST00000227155		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000359864	ENST00000342935		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-intron	ENST00000359864	ENST00000530931		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000397122	ENST00000227155		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-5UTR	ENST00000397122	ENST00000342935		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
5UTR-intron	ENST00000397122	ENST00000530931		TCGA	RV	STAD	TCGA-BR-8485-01A	TEAD4	chr12	3069206	+	CD82	chr11	44609025	+
Frame-shit	ENST00000392679	ENST00000263578		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-3UTR	ENST00000392679	ENST00000534011		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-5UTR	ENST00000392679	ENST00000442061		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-5UTR	ENST00000392679	ENST00000532125		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
intron-3CDS	ENST00000467006	ENST00000263578		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
intron-3UTR	ENST00000467006	ENST00000534011		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
intron-5UTR	ENST00000467006	ENST00000442061		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
intron-5UTR	ENST00000467006	ENST00000532125		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
Frame-shit	ENST00000392678	ENST00000263578		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-3UTR	ENST00000392678	ENST00000534011		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-5UTR	ENST00000392678	ENST00000442061		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-5UTR	ENST00000392678	ENST00000532125		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
Frame-shit	ENST00000392680	ENST00000263578		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-3UTR	ENST00000392680	ENST00000534011		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-5UTR	ENST00000392680	ENST00000442061		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-5UTR	ENST00000392680	ENST00000532125		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TIRAP	chr11	126160856	+	FOXRED1	chr11	126142864	+
5CDS-3UTR	ENST00000283206	ENST00000465812		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000283206	ENST00000409052		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000283206	ENST00000361779		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000283206	ENST00000259206		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000283206	ENST00000354115		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000283206	ENST00000409930		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
3UTR-3UTR	ENST00000463427	ENST00000465812		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
3UTR-3UTR	ENST00000463427	ENST00000409052		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000463427	ENST00000361779		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000463427	ENST00000259206		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000463427	ENST00000354115		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
3UTR-intron	ENST00000463427	ENST00000409930		TCGA	RV	STAD	TCGA-BR-4357-01A	TMEM87B	chr2	112847295	+	IL1RN	chr2	113868693	+
In-frame	ENST00000393066	ENST00000389840		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
In-frame	ENST00000393066	ENST00000585328		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
5CDS-5UTR	ENST00000393066	ENST00000586052		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
In-frame	ENST00000262294	ENST00000389840		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
In-frame	ENST00000262294	ENST00000585328		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
5CDS-5UTR	ENST00000262294	ENST00000586052		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
Frame-shit	ENST00000376149	ENST00000389840		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
Frame-shit	ENST00000376149	ENST00000585328		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
5CDS-5UTR	ENST00000376149	ENST00000586052		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
In-frame	ENST00000393065	ENST00000389840		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
In-frame	ENST00000393065	ENST00000585328		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
5CDS-5UTR	ENST00000393065	ENST00000586052		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
intron-3CDS	ENST00000584889	ENST00000389840		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
intron-3CDS	ENST00000584889	ENST00000585328		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
intron-5UTR	ENST00000584889	ENST00000586052		TCGA	RV	STAD	TCGA-BR-8590-01A	TRIM37	chr17	57161363	-	DNAH17	chr17	76441762	-
In-frame	ENST00000304621	ENST00000269228		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
5CDS-intron	ENST00000304621	ENST00000412552		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
5CDS-intron	ENST00000304621	ENST00000540608		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
In-frame	ENST00000317571	ENST00000269228		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
5CDS-intron	ENST00000317571	ENST00000412552		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
5CDS-intron	ENST00000317571	ENST00000540608		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-3CDS	ENST00000578150	ENST00000269228		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000578150	ENST00000412552		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000578150	ENST00000540608		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-3CDS	ENST00000584250	ENST00000269228		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000584250	ENST00000412552		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000584250	ENST00000540608		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-3CDS	ENST00000577185	ENST00000269228		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000577185	ENST00000412552		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000577185	ENST00000540608		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-3CDS	ENST00000540918	ENST00000269228		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000540918	ENST00000412552		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
intron-intron	ENST00000540918	ENST00000540608		TCGA	RV	STAD	TCGA-CD-8526-01A	TTC39C	chr18	21663045	+	NPC1	chr18	21153538	-
5CDS-3UTR	ENST00000216129	ENST00000459775		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000216129	ENST00000450066		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000216129	ENST00000409025		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000216129	ENST00000409470		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000216129	ENST00000323701		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-intron	ENST00000216129	ENST00000409766		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000494035	ENST00000459775		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000494035	ENST00000450066		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000494035	ENST00000409025		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000494035	ENST00000409470		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-3UTR	ENST00000494035	ENST00000323701		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
5CDS-intron	ENST00000494035	ENST00000409766		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
intron-3UTR	ENST00000484118	ENST00000459775		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
intron-3UTR	ENST00000484118	ENST00000450066		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
intron-3UTR	ENST00000484118	ENST00000409025		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
intron-3UTR	ENST00000484118	ENST00000409470		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
intron-3UTR	ENST00000484118	ENST00000323701		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
intron-intron	ENST00000484118	ENST00000409766		TCGA	RV	STAD	TCGA-BR-4357-01A	TTLL12	chr22	43564780	-	USP39	chr2	85872071	+
In-frame	ENST00000249837	ENST00000443617		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13C	chr15	62232846	-	HERC1	chr15	63904755	-
In-frame	ENST00000261517	ENST00000443617		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13C	chr15	62232846	-	HERC1	chr15	63904755	-
In-frame	ENST00000395896	ENST00000443617		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13C	chr15	62232846	-	HERC1	chr15	63904755	-
In-frame	ENST00000395898	ENST00000443617		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13C	chr15	62232846	-	HERC1	chr15	63904755	-
intron-3CDS	ENST00000558919	ENST00000443617		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13C	chr15	62232846	-	HERC1	chr15	63904755	-
In-frame	ENST00000375743	ENST00000361445		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-intron	ENST00000375743	ENST00000376838		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-intron	ENST00000375743	ENST00000495435		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
In-frame	ENST00000537142	ENST00000361445		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-intron	ENST00000537142	ENST00000376838		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-intron	ENST00000537142	ENST00000495435		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
In-frame	ENST00000375733	ENST00000361445		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-intron	ENST00000375733	ENST00000376838		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-intron	ENST00000375733	ENST00000495435		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
intron-3CDS	ENST00000448462	ENST00000361445		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
intron-intron	ENST00000448462	ENST00000376838		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
intron-intron	ENST00000448462	ENST00000495435		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
intron-3CDS	ENST00000479282	ENST00000361445		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
intron-intron	ENST00000479282	ENST00000376838		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
intron-intron	ENST00000479282	ENST00000495435		TCGA	RV	STAD	TCGA-BR-4357-01A	ZBTB17	chr1	16269559	-	MTOR	chr1	11227574	-
5CDS-5UTR	ENST00000383440	ENST00000315677		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000383440	ENST00000581527		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000400147		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000400149		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000400155		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000400150		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000584874		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000534970		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000539435		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000581699		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000400145		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000383440	ENST00000515196		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000383440	ENST00000478161		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000262126	ENST00000315677		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000262126	ENST00000581527		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000400147		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000400149		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000400155		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000400150		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000584874		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000534970		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000539435		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000581699		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000400145		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000262126	ENST00000515196		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000262126	ENST00000478161		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-5UTR	ENST00000540578	ENST00000315677		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-5UTR	ENST00000540578	ENST00000581527		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000400147		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000400149		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000400155		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000400150		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000584874		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000534970		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000539435		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000581699		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000400145		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-5UTR	ENST00000540578	ENST00000515196		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
3UTR-intron	ENST00000540578	ENST00000478161		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000400020	ENST00000315677		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000400020	ENST00000581527		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000400147		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000400149		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000400155		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000400150		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000584874		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000534970		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000539435		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000581699		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000400145		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-5UTR	ENST00000400020	ENST00000515196		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
5CDS-intron	ENST00000400020	ENST00000478161		TCGA	RV	STAD	TCGA-FP-8209-01A	ANKRD12	chr18	9195696	+	DLGAP1	chr18	4005201	-
Frame-shit	ENST00000397843	ENST00000260264		TCGA	RV	STAD	TCGA-CG-4438-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120186070	+
Frame-shit	ENST00000397843	ENST00000543440		TCGA	RV	STAD	TCGA-CG-4438-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120186070	+
Frame-shit	ENST00000356641	ENST00000260264		TCGA	RV	STAD	TCGA-CG-4438-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120186070	+
Frame-shit	ENST00000356641	ENST00000543440		TCGA	RV	STAD	TCGA-CG-4438-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120186070	+
intron-3CDS	ENST00000532993	ENST00000260264		TCGA	RV	STAD	TCGA-CG-4438-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120186070	+
intron-3CDS	ENST00000532993	ENST00000543440		TCGA	RV	STAD	TCGA-CG-4438-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120186070	+
Frame-shit	ENST00000335221	ENST00000580974		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000335221	ENST00000299954		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000335221	ENST00000335257		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000335221	ENST00000581322		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000321892	ENST00000580974		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000321892	ENST00000299954		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000321892	ENST00000335257		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000321892	ENST00000581322		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000306378	ENST00000580974		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000306378	ENST00000299954		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000306378	ENST00000335257		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000306378	ENST00000581322		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000424123	ENST00000580974		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000424123	ENST00000299954		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000424123	ENST00000335257		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
Frame-shit	ENST00000424123	ENST00000581322		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
intron-3CDS	ENST00000577770	ENST00000580974		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
intron-3CDS	ENST00000577770	ENST00000299954		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
intron-3CDS	ENST00000577770	ENST00000335257		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
intron-3CDS	ENST00000577770	ENST00000581322		TCGA	RV	STAD	TCGA-BR-4357-01A	BPTF	chr17	65871136	+	PITPNC1	chr17	65628259	+
In-frame	ENST00000264057	ENST00000347464		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000264057	ENST00000392017		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000264057	ENST00000373525		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000264057	ENST00000392020		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000264057	ENST00000392018		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
5CDS-3UTR	ENST00000264057	ENST00000498620		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000409813	ENST00000347464		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000409813	ENST00000392017		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000409813	ENST00000373525		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000409813	ENST00000392020		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
In-frame	ENST00000409813	ENST00000392018		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
5CDS-3UTR	ENST00000409813	ENST00000498620		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
intron-3CDS	ENST00000489613	ENST00000347464		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
intron-3CDS	ENST00000489613	ENST00000392017		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
intron-3CDS	ENST00000489613	ENST00000373525		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
intron-3CDS	ENST00000489613	ENST00000392020		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
intron-3CDS	ENST00000489613	ENST00000392018		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
intron-3UTR	ENST00000489613	ENST00000498620		TCGA	RV	STAD	TCGA-BR-4369-01A	DGKD	chr2	234299129	+	ATG16L1	chr2	234186214	+
5CDS-intron	ENST00000309311	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8589-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000309311	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8589-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
intron-intron	ENST00000600720	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8589-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
intron-intron	ENST00000600720	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8589-01A	EEF2	chr19	3976055	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000202028	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000202028	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000202028	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
5UTR-3CDS	ENST00000373950	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
5UTR-3UTR	ENST00000373950	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
5UTR-3UTR	ENST00000373950	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000441639	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000441639	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000441639	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000373946	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000373946	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000373946	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000338074	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000338074	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000338074	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000373941	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000373941	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000373941	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3CDS	ENST00000479336	ENST00000374012		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000479336	ENST00000439301		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
intron-3UTR	ENST00000479336	ENST00000481202		TCGA	RV	STAD	TCGA-FP-8631-01A	EPB41L1	chr20	34680735	+	PHF20	chr20	34501171	+
5UTR-3UTR	ENST00000476844	ENST00000453168		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000476844	ENST00000295770		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000492590	ENST00000453168		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000492590	ENST00000295770		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000466788	ENST00000453168		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000466788	ENST00000295770		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000468189	ENST00000453168		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
5UTR-3UTR	ENST00000468189	ENST00000295770		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000341848	ENST00000453168		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
intron-3UTR	ENST00000341848	ENST00000295770		TCGA	RV	STAD	TCGA-CG-4443-01A	FHIT	chr3	60807613	-	STT3B	chr3	31617888	+
Frame-shit	ENST00000379561	ENST00000298125		TCGA	RV	STAD	TCGA-BR-8678-01A	FOXO1	chr13	41239720	-	WDFY2	chr13	52234732	+
5CDS-intron	ENST00000379561	ENST00000460145		TCGA	RV	STAD	TCGA-BR-8678-01A	FOXO1	chr13	41239720	-	WDFY2	chr13	52234732	+
intron-3CDS	ENST00000473775	ENST00000298125		TCGA	RV	STAD	TCGA-BR-8678-01A	FOXO1	chr13	41239720	-	WDFY2	chr13	52234732	+
intron-intron	ENST00000473775	ENST00000460145		TCGA	RV	STAD	TCGA-BR-8678-01A	FOXO1	chr13	41239720	-	WDFY2	chr13	52234732	+
In-frame	ENST00000443617	ENST00000261891		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HERC1	chr15	63988323	-	DAPK2	chr15	64263760	-
In-frame	ENST00000443617	ENST00000457488		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HERC1	chr15	63988323	-	DAPK2	chr15	64263760	-
In-frame	ENST00000443617	ENST00000558069		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HERC1	chr15	63988323	-	DAPK2	chr15	64263760	-
5CDS-5UTR	ENST00000443617	ENST00000558482		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HERC1	chr15	63988323	-	DAPK2	chr15	64263760	-
In-frame	ENST00000326448	ENST00000273691		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
In-frame	ENST00000326448	ENST00000344209		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
In-frame	ENST00000326448	ENST00000393631		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000326448	ENST00000462014		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
5CDS-5UTR	ENST00000326448	ENST00000460554		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000483465	ENST00000273691		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000483465	ENST00000344209		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000483465	ENST00000393631		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000483465	ENST00000462014		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
5CDS-5UTR	ENST00000483465	ENST00000460554		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
In-frame	ENST00000496589	ENST00000273691		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
In-frame	ENST00000496589	ENST00000344209		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
In-frame	ENST00000496589	ENST00000393631		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000496589	ENST00000462014		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
5CDS-5UTR	ENST00000496589	ENST00000460554		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
intron-3CDS	ENST00000477495	ENST00000273691		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
intron-3CDS	ENST00000477495	ENST00000344209		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
intron-3CDS	ENST00000477495	ENST00000393631		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
intron-3CDS	ENST00000477495	ENST00000462014		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
intron-5UTR	ENST00000477495	ENST00000460554		TCGA	RV	STAD	TCGA-CD-8529-01A	IFT80	chr3	160018671	-	ILDR1	chr3	121726008	-
Frame-shit	ENST00000374316	ENST00000293748		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000374316	ENST00000418600		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-3UTR	ENST00000374316	ENST00000496374		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000428982		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000461459		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000551507		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000455687		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000395071		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000414753		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000605930	ENST00000293748		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000605930	ENST00000418600		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-3UTR	ENST00000605930	ENST00000496374		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000428982		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000461459		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000551507		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000455687		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000395071		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000414753		TCGA	RV	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646616	+	SYNGAP1	chr6	33391254	+
intron-3CDS	ENST00000465039	ENST00000265537		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
intron-3CDS	ENST00000465039	ENST00000415258		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
intron-3CDS	ENST00000465039	ENST00000414984		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
intron-3UTR	ENST00000465039	ENST00000467936		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
In-frame	ENST00000440097	ENST00000265537		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
In-frame	ENST00000440097	ENST00000415258		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
In-frame	ENST00000440097	ENST00000414984		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
5CDS-3UTR	ENST00000440097	ENST00000467936		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
In-frame	ENST00000273317	ENST00000265537		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
In-frame	ENST00000273317	ENST00000415258		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
In-frame	ENST00000273317	ENST00000414984		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
5CDS-3UTR	ENST00000273317	ENST00000467936		TCGA	RV	STAD	TCGA-BR-4357-01A	LIMD1	chr3	45637779	+	LARS2	chr3	45557586	+
5CDS-5UTR	ENST00000394287	ENST00000309156		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394287	ENST00000309185		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394287	ENST00000394211		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394287	ENST00000578702		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394287	ENST00000445327		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394287	ENST00000394209		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394287	ENST00000394204		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300651	ENST00000309156		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300651	ENST00000309185		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300651	ENST00000394211		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000300651	ENST00000578702		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000300651	ENST00000445327		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300651	ENST00000394209		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000300651	ENST00000394204		TCGA	RV	STAD	TCGA-BR-8486-01A	MED1	chr17	37607291	-	GRB7	chr17	37898505	+
In-frame	ENST00000366671	ENST00000405015		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000366671	ENST00000431489		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000366671	ENST00000354487		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000366671	ENST00000263991		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000366671	ENST00000405289		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
5CDS-3UTR	ENST00000366671	ENST00000496857		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000282549	ENST00000405015		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000282549	ENST00000431489		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000282549	ENST00000354487		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000282549	ENST00000263991		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
In-frame	ENST00000282549	ENST00000405289		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
5CDS-3UTR	ENST00000282549	ENST00000496857		TCGA	RV	STAD	TCGA-BR-8590-01A	OTX1	chr2	63281333	+	EHBP1	chr2	63206323	+
Frame-shit	ENST00000337959	ENST00000216129		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000337959	ENST00000494035		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000337959	ENST00000484118		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
Frame-shit	ENST00000263246	ENST00000216129		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000263246	ENST00000494035		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000263246	ENST00000484118		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
Frame-shit	ENST00000407585	ENST00000216129		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000407585	ENST00000494035		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000407585	ENST00000484118		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
Frame-shit	ENST00000403744	ENST00000216129		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000403744	ENST00000494035		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000403744	ENST00000484118		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
Frame-shit	ENST00000402229	ENST00000216129		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000402229	ENST00000494035		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
5CDS-intron	ENST00000402229	ENST00000484118		TCGA	RV	STAD	TCGA-CD-8532-01A	PACSIN2	chr22	43308027	-	TTLL12	chr22	43579155	-
intron-3CDS	ENST00000415061	ENST00000332836		TCGA	RV	STAD	TCGA-BR-4357-01A	RDH13	chr19	55580690	-	NLRP9	chr19	56223956	-
5UTR-3CDS	ENST00000396247	ENST00000332836		TCGA	RV	STAD	TCGA-BR-4357-01A	RDH13	chr19	55580690	-	NLRP9	chr19	56223956	-
intron-3CDS	ENST00000592423	ENST00000332836		TCGA	RV	STAD	TCGA-BR-4357-01A	RDH13	chr19	55580690	-	NLRP9	chr19	56223956	-
In-frame	ENST00000399799	ENST00000313654		TCGA	RV	STAD	TCGA-CG-4301-01A	ROCK1	chr18	18546878	-	LAMA3	chr18	21393021	+
In-frame	ENST00000399799	ENST00000399516		TCGA	RV	STAD	TCGA-CG-4301-01A	ROCK1	chr18	18546878	-	LAMA3	chr18	21393021	+
5CDS-intron	ENST00000399799	ENST00000269217		TCGA	RV	STAD	TCGA-CG-4301-01A	ROCK1	chr18	18546878	-	LAMA3	chr18	21393021	+
5CDS-intron	ENST00000399799	ENST00000587184		TCGA	RV	STAD	TCGA-CG-4301-01A	ROCK1	chr18	18546878	-	LAMA3	chr18	21393021	+
5CDS-intron	ENST00000399799	ENST00000588770		TCGA	RV	STAD	TCGA-CG-4301-01A	ROCK1	chr18	18546878	-	LAMA3	chr18	21393021	+
In-frame	ENST00000254663	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000254663	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000254663	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000254663	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000373332	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000373332	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000373332	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000373332	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000555827	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000555827	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000555827	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000555827	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000409736	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409736	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000409736	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000409736	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000422984	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000422984	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000422984	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000422984	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000429612	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000429612	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000429612	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
intron-3CDS	ENST00000429612	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000480859	ENST00000404910		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000480859	ENST00000254661		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000480859	ENST00000409726		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000480859	ENST00000403885		TCGA	RV	STAD	TCGA-BR-4357-01A	SCLY	chr2	238978118	+	RAMP1	chr2	238820170	+
In-frame	ENST00000417961	ENST00000244043		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5CDS-5UTR	ENST00000417961	ENST00000478971		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
In-frame	ENST00000361573	ENST00000244043		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5CDS-5UTR	ENST00000361573	ENST00000478971		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5UTR-3CDS	ENST00000541138	ENST00000244043		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5UTR-5UTR	ENST00000541138	ENST00000478971		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5UTR-3CDS	ENST00000539601	ENST00000244043		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5UTR-5UTR	ENST00000539601	ENST00000478971		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
intron-3CDS	ENST00000490250	ENST00000244043		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
intron-5UTR	ENST00000490250	ENST00000478971		TCGA	RV	STAD	TCGA-FP-8631-01A	SLC9A8	chr20	48439678	+	PTGIS	chr20	48124601	-
5UTR-intron	ENST00000447404	ENST00000473039		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000447404	ENST00000373624		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000447404	ENST00000542603		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000447404	ENST00000394219		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000447404	ENST00000373620		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000447404	ENST00000394215		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000447404	ENST00000373618		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000473039		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000373624		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000542603		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000394219		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000373620		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000394215		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000348403	ENST00000373618		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000473039		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000373624		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000542603		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000394219		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000373620		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000394215		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5UTR-intron	ENST00000360998	ENST00000373618		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000473039		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000373624		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000542603		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000394219		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000373620		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000394215		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
intron-intron	ENST00000530364	ENST00000373618		TCGA	RV	STAD	TCGA-CD-8535-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126220176	-
5CDS-intron	ENST00000259746	ENST00000372165		TCGA	RV	STAD	TCGA-BR-4366-01A	TMEM63B	chr6	44104176	+	RSPH9	chr6	43623299	+
5CDS-intron	ENST00000259746	ENST00000372163		TCGA	RV	STAD	TCGA-BR-4366-01A	TMEM63B	chr6	44104176	+	RSPH9	chr6	43623299	+
5CDS-intron	ENST00000323267	ENST00000372165		TCGA	RV	STAD	TCGA-BR-4366-01A	TMEM63B	chr6	44104176	+	RSPH9	chr6	43623299	+
5CDS-intron	ENST00000323267	ENST00000372163		TCGA	RV	STAD	TCGA-BR-4366-01A	TMEM63B	chr6	44104176	+	RSPH9	chr6	43623299	+
intron-intron	ENST00000527188	ENST00000372165		TCGA	RV	STAD	TCGA-BR-4366-01A	TMEM63B	chr6	44104176	+	RSPH9	chr6	43623299	+
intron-intron	ENST00000527188	ENST00000372163		TCGA	RV	STAD	TCGA-BR-4366-01A	TMEM63B	chr6	44104176	+	RSPH9	chr6	43623299	+
intron-intron	ENST00000476901	ENST00000396000		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
intron-intron	ENST00000476901	ENST00000262735		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
intron-intron	ENST00000476901	ENST00000407236		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
intron-3UTR	ENST00000476901	ENST00000481567		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
intron-intron	ENST00000476901	ENST00000402126		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
intron-intron	ENST00000476901	ENST00000434345		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000290846	ENST00000396000		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000290846	ENST00000262735		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000290846	ENST00000407236		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-3UTR	ENST00000290846	ENST00000481567		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000290846	ENST00000402126		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000290846	ENST00000434345		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000381019	ENST00000396000		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000381019	ENST00000262735		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000381019	ENST00000407236		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-3UTR	ENST00000381019	ENST00000481567		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000381019	ENST00000402126		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000381019	ENST00000434345		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000424260	ENST00000396000		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000424260	ENST00000262735		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000424260	ENST00000407236		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-3UTR	ENST00000424260	ENST00000481567		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000424260	ENST00000402126		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
5CDS-intron	ENST00000424260	ENST00000434345		TCGA	RV	STAD	TCGA-BR-4363-01A	TRMU	chr22	46739265	+	PPARA	chr22	46584620	+
Frame-shit	ENST00000358136	ENST00000444836		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
Frame-shit	ENST00000358136	ENST00000235329		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
5CDS-intron	ENST00000358136	ENST00000497302		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
Frame-shit	ENST00000356315	ENST00000444836		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
Frame-shit	ENST00000356315	ENST00000235329		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
5CDS-intron	ENST00000356315	ENST00000497302		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000496628	ENST00000444836		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000496628	ENST00000235329		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-intron	ENST00000496628	ENST00000497302		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000543766	ENST00000444836		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000543766	ENST00000235329		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-intron	ENST00000543766	ENST00000497302		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000471923	ENST00000444836		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000471923	ENST00000235329		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-intron	ENST00000471923	ENST00000497302		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000543710	ENST00000444836		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-3CDS	ENST00000543710	ENST00000235329		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
intron-intron	ENST00000543710	ENST00000497302		TCGA	RV	STAD	TCGA-FP-8631-01A	VPS13D	chr1	12395884	+	MFN2	chr1	12066595	+
In-frame	ENST00000380861	ENST00000380913		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000380861	ENST00000493668		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000380861	ENST00000418909		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
In-frame	ENST00000454666	ENST00000380913		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000454666	ENST00000493668		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000454666	ENST00000418909		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
intron-3CDS	ENST00000466248	ENST00000380913		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
intron-intron	ENST00000466248	ENST00000493668		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
intron-intron	ENST00000466248	ENST00000418909		TCGA	RV	STAD	TCGA-BR-4357-01A	WWC3	chrX	10102636	+	SHROOM2	chrX	9841692	+
5CDS-5UTR	ENST00000261381	ENST00000395389		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	SPN	chr16	29675016	+
5CDS-5UTR	ENST00000261381	ENST00000360121		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	SPN	chr16	29675016	+
intron-5UTR	ENST00000568226	ENST00000395389		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	SPN	chr16	29675016	+
intron-5UTR	ENST00000568226	ENST00000360121		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	SPN	chr16	29675016	+
5CDS-5UTR	ENST00000311921	ENST00000340736		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-5UTR	ENST00000311921	ENST00000361434		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-intron	ENST00000311921	ENST00000591528		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-5UTR	ENST00000544431	ENST00000340736		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-5UTR	ENST00000544431	ENST00000361434		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-intron	ENST00000544431	ENST00000591528		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-5UTR	ENST00000355898	ENST00000340736		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-5UTR	ENST00000355898	ENST00000361434		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
5CDS-intron	ENST00000355898	ENST00000591528		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF507	chr19	32851524	+	LPHN1	chr19	14294509	-
In-frame	ENST00000298992	ENST00000278359		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
In-frame	ENST00000298992	ENST00000395787		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
5CDS-intron	ENST00000298992	ENST00000527830		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
In-frame	ENST00000435224	ENST00000278359		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
In-frame	ENST00000435224	ENST00000395787		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
5CDS-intron	ENST00000435224	ENST00000527830		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
intron-3CDS	ENST00000530814	ENST00000278359		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
intron-3CDS	ENST00000530814	ENST00000395787		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
intron-intron	ENST00000530814	ENST00000527830		TCGA	RV	STAD	TCGA-CG-4449-01A	ABTB2	chr11	34378248	-	APIP	chr11	34916657	-
5UTR-3UTR	ENST00000264010	ENST00000567684		TCGA	RV	STAD	TCGA-BR-8373-01A	CTCF	chr16	67605167	+	HSD11B2	chr16	67469531	+
5UTR-3UTR	ENST00000264010	ENST00000326152		TCGA	RV	STAD	TCGA-BR-8373-01A	CTCF	chr16	67605167	+	HSD11B2	chr16	67469531	+
5UTR-3UTR	ENST00000401394	ENST00000567684		TCGA	RV	STAD	TCGA-BR-8373-01A	CTCF	chr16	67605167	+	HSD11B2	chr16	67469531	+
5UTR-3UTR	ENST00000401394	ENST00000326152		TCGA	RV	STAD	TCGA-BR-8373-01A	CTCF	chr16	67605167	+	HSD11B2	chr16	67469531	+
In-frame	ENST00000306320	ENST00000304460		TCGA	RV	STAD	TCGA-BR-7959-01A	FAM134B	chr5	16481118	-	SLC6A19	chr5	1208861	+
In-frame	ENST00000399793	ENST00000304460		TCGA	RV	STAD	TCGA-BR-7959-01A	FAM134B	chr5	16481118	-	SLC6A19	chr5	1208861	+
intron-3CDS	ENST00000509048	ENST00000304460		TCGA	RV	STAD	TCGA-BR-7959-01A	FAM134B	chr5	16481118	-	SLC6A19	chr5	1208861	+
Frame-shit	ENST00000534526	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
Frame-shit	ENST00000534526	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
5CDS-intron	ENST00000534526	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000531134	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000531134	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000427716	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000427716	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000266482	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000266482	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000546442	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000546442	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000525053	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000525053	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000381025	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000381025	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000472289	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000472289	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000335762		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399655		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000480911		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399644		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000344100		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399638		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399629		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399597		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000327702		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399621		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399649		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399637		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000402845		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399591		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399641		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000347598		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399606		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399595		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399601		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399603		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399634		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000399617		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-3CDS	ENST00000473513	ENST00000406454		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
intron-intron	ENST00000473513	ENST00000491104		TCGA	RV	STAD	TCGA-RD-A8N6-01A	FGD4	chr12	32552893	+	CACNA1C	chr12	2558142	+
In-frame	ENST00000602661	ENST00000301831		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000602661	ENST00000420927		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000602661	ENST00000489118		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000602661	ENST00000414606		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
In-frame	ENST00000223528	ENST00000301831		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000223528	ENST00000420927		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000223528	ENST00000489118		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000223528	ENST00000414606		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
In-frame	ENST00000540160	ENST00000301831		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000540160	ENST00000420927		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000540160	ENST00000489118		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000540160	ENST00000414606		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
In-frame	ENST00000448551	ENST00000301831		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000448551	ENST00000420927		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000448551	ENST00000489118		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000448551	ENST00000414606		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
In-frame	ENST00000357998	ENST00000301831		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000357998	ENST00000420927		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000357998	ENST00000489118		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
5CDS-intron	ENST00000357998	ENST00000414606		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
3UTR-3CDS	ENST00000490134	ENST00000301831		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
3UTR-intron	ENST00000490134	ENST00000420927		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
3UTR-intron	ENST00000490134	ENST00000489118		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
3UTR-intron	ENST00000490134	ENST00000414606		TCGA	RV	STAD	TCGA-FP-A8CX-01A	FKTN	chr9	108358938	+	ULK4	chr3	41795980	-
Frame-shit	ENST00000205061	ENST00000283882		TCGA	RV	STAD	TCGA-BR-4357-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000205061	ENST00000564286		TCGA	RV	STAD	TCGA-BR-4357-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000422840	ENST00000283882		TCGA	RV	STAD	TCGA-BR-4357-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000422840	ENST00000564286		TCGA	RV	STAD	TCGA-BR-4357-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75339080	-
Frame-shit	ENST00000447066	ENST00000283882		TCGA	RV	STAD	TCGA-BR-4357-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000447066	ENST00000564286		TCGA	RV	STAD	TCGA-BR-4357-01A	GLG1	chr16	74640555	-	CFDP1	chr16	75339080	-
3UTR-3CDS	ENST00000377777	ENST00000369393		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HIST1H2BD	chr6	26158787	+	MDN1	chr6	90360566	-
3UTR-3CDS	ENST00000377777	ENST00000428876		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HIST1H2BD	chr6	26158787	+	MDN1	chr6	90360566	-
3UTR-intron	ENST00000377777	ENST00000468568		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HIST1H2BD	chr6	26158787	+	MDN1	chr6	90360566	-
3UTR-3CDS	ENST00000289316	ENST00000369393		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HIST1H2BD	chr6	26158787	+	MDN1	chr6	90360566	-
3UTR-3CDS	ENST00000289316	ENST00000428876		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HIST1H2BD	chr6	26158787	+	MDN1	chr6	90360566	-
3UTR-intron	ENST00000289316	ENST00000468568		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	HIST1H2BD	chr6	26158787	+	MDN1	chr6	90360566	-
In-frame	ENST00000264674	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000264674	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000264674	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000264674	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
In-frame	ENST00000392736	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000392736	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000392736	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000392736	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
Frame-shit	ENST00000464456	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000464456	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000464456	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000464456	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
In-frame	ENST00000472280	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000472280	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000472280	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000472280	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
In-frame	ENST00000494292	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000494292	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000494292	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000494292	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
Frame-shit	ENST00000468789	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000468789	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000468789	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000468789	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
Frame-shit	ENST00000460814	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000460814	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000460814	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000460814	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
Frame-shit	ENST00000433243	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-3UTR	ENST00000433243	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-5UTR	ENST00000433243	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
5CDS-intron	ENST00000433243	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
intron-3CDS	ENST00000485957	ENST00000267339		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
intron-3UTR	ENST00000485957	ENST00000375758		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
intron-5UTR	ENST00000485957	ENST00000489973		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
intron-intron	ENST00000485957	ENST00000310847		TCGA	RV	STAD	TCGA-BR-4191-01A	MECOM	chr3	168849217	-	ANKRD10	chr13	111536140	-
intron-3CDS	ENST00000487096	ENST00000400897		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
intron-intron	ENST00000487096	ENST00000400898		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
In-frame	ENST00000360840	ENST00000400897		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
5CDS-intron	ENST00000360840	ENST00000400898		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
In-frame	ENST00000605337	ENST00000400897		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
5CDS-intron	ENST00000605337	ENST00000400898		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
Frame-shit	ENST00000336230	ENST00000400897		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
5CDS-intron	ENST00000336230	ENST00000400898		TCGA	RV	STAD	TCGA-BR-4357-01A	MRPL37	chr1	54666262	+	MASP2	chr1	11090939	-
intron-3CDS	ENST00000341426	ENST00000581396		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000379504		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000318094		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000395739		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000535933		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000540946		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000542206		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341426	ENST00000478943		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-intron	ENST00000341426	ENST00000577517		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000581396		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000379504		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000318094		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000395739		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000535933		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000540946		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000542206		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000341991	ENST00000478943		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-intron	ENST00000341991	ENST00000577517		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000581396		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000379504		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000318094		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000395739		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000535933		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000540946		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000542206		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000378625	ENST00000478943		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-intron	ENST00000378625	ENST00000577517		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000581396		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000379504		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000318094		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000395739		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000535933		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000540946		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000542206		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000344463	ENST00000478943		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-intron	ENST00000344463	ENST00000577517		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000581396		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000379504		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000318094		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000395739		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000535933		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000540946		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000542206		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000492768	ENST00000478943		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-intron	ENST00000492768	ENST00000577517		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000581396		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000379504		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000318094		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000395739		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000535933		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000540946		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000542206		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-3CDS	ENST00000342348	ENST00000478943		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
intron-intron	ENST00000342348	ENST00000577517		TCGA	RV	STAD	TCGA-FP-8631-01A	NADK	chr1	1711344	-	TOM1L2	chr17	17766162	-
5UTR-3CDS	ENST00000341376	ENST00000392038		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-3CDS	ENST00000341376	ENST00000424901		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-3CDS	ENST00000341376	ENST00000311278		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-intron	ENST00000341376	ENST00000579047		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-intron	ENST00000341376	ENST00000581582		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-3CDS	ENST00000353205	ENST00000392038		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-3CDS	ENST00000353205	ENST00000424901		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-3CDS	ENST00000353205	ENST00000311278		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-intron	ENST00000353205	ENST00000579047		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
5UTR-intron	ENST00000353205	ENST00000581582		TCGA	RV	STAD	TCGA-RD-A8MW-01A	NFYA	chr6	41040823	+	AKT2	chr19	40739858	-
In-frame	ENST00000334513	ENST00000334163		TCGA	RV	STAD	TCGA-D7-8575-01A	NUDT17	chr1	145589236	-	POLR3C	chr1	145595220	-
5CDS-intron	ENST00000334513	ENST00000369294		TCGA	RV	STAD	TCGA-D7-8575-01A	NUDT17	chr1	145589236	-	POLR3C	chr1	145595220	-
5CDS-intron	ENST00000334513	ENST00000471254		TCGA	RV	STAD	TCGA-D7-8575-01A	NUDT17	chr1	145589236	-	POLR3C	chr1	145595220	-
intron-3CDS	ENST00000444015	ENST00000334163		TCGA	RV	STAD	TCGA-D7-8575-01A	NUDT17	chr1	145589236	-	POLR3C	chr1	145595220	-
intron-intron	ENST00000444015	ENST00000369294		TCGA	RV	STAD	TCGA-D7-8575-01A	NUDT17	chr1	145589236	-	POLR3C	chr1	145595220	-
intron-intron	ENST00000444015	ENST00000471254		TCGA	RV	STAD	TCGA-D7-8575-01A	NUDT17	chr1	145589236	-	POLR3C	chr1	145595220	-
5UTR-5UTR	ENST00000554546	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000554546	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000554546	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000554546	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000356296	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000356296	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000356296	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000356296	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000557597	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000557597	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000557597	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000557597	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000555238	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000555238	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000555238	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000555238	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000355058	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000355058	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000355058	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000355058	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000359560	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000359560	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000359560	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000359560	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000555394	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000555394	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000555394	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000555394	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000454166	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000454166	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000454166	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000454166	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000544991	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000544991	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000544991	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000544991	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000560335	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000560335	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000560335	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000560335	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000555738	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000555738	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000555738	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000555738	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000559312	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000559312	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000559312	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000559312	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000554521	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000554521	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000554521	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000554521	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000535282	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000535282	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000535282	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000535282	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-5UTR	ENST00000556600	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000556600	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000556600	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
5UTR-intron	ENST00000556600	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-5UTR	ENST00000556772	ENST00000553558		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000556772	ENST00000334988		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000556772	ENST00000566478		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
intron-intron	ENST00000556772	ENST00000560393		TCGA	RV	STAD	TCGA-BR-8485-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73996948	-
In-frame	ENST00000262077	ENST00000559237		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
In-frame	ENST00000262077	ENST00000267807		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
In-frame	ENST00000262077	ENST00000559000		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5CDS-5UTR	ENST00000262077	ENST00000396245		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5CDS-intron	ENST00000262077	ENST00000558320		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5CDS-intron	ENST00000262077	ENST00000561122		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
In-frame	ENST00000537253	ENST00000559237		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
In-frame	ENST00000537253	ENST00000267807		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
In-frame	ENST00000537253	ENST00000559000		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5CDS-5UTR	ENST00000537253	ENST00000396245		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5CDS-intron	ENST00000537253	ENST00000558320		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5CDS-intron	ENST00000537253	ENST00000561122		TCGA	RV	STAD	TCGA-D7-8579-01A	NUP153	chr6	17706508	-	ZNF280D	chr15	56985413	-
5UTR-3CDS	ENST00000545334	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-intron	ENST00000545334	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-3CDS	ENST00000537927	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-intron	ENST00000537927	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-3CDS	ENST00000318304	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-intron	ENST00000318304	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-3CDS	ENST00000535047	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-intron	ENST00000535047	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-3CDS	ENST00000542629	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-intron	ENST00000542629	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-3CDS	ENST00000228425	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
5UTR-intron	ENST00000228425	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
3UTR-3CDS	ENST00000541633	ENST00000357103		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
3UTR-intron	ENST00000541633	ENST00000544470		TCGA	RV	STAD	TCGA-HU-A4GC-01A	PPFIBP1	chr12	27731172	+	ADIPOR2	chr12	1882008	+
intron-3CDS	ENST00000250559	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000250559	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000250559	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000250559	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000250559	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000250559	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000250559	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000393436	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000393436	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000393436	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000393436	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000393436	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-intron	ENST00000393436	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-intron	ENST00000393436	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000341355	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000341355	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000341355	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000341355	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000341355	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000341355	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000341355	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000537460	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000537460	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000537460	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000537460	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000537460	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000537460	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000537460	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000463493	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000463493	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000463493	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000463493	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000463493	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000463493	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000463493	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000450214	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000450214	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000450214	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000450214	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000450214	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000450214	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000450214	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543393	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543393	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543393	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543393	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543393	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000543393	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000543393	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000378985	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000378985	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000378985	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000378985	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000378985	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000378985	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000378985	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000540209	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000540209	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000540209	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000540209	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000540209	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000540209	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000540209	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000539091	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000539091	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000539091	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000539091	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000539091	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-intron	ENST00000539091	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-intron	ENST00000539091	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000542145	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000542145	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000542145	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000542145	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000542145	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000542145	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000542145	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543697	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543697	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543697	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543697	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000543697	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000543697	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000543697	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000541216	ENST00000267085		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000541216	ENST00000379843		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000541216	ENST00000379846		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000541216	ENST00000444623		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-3CDS	ENST00000541216	ENST00000453446		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000541216	ENST00000542115		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
intron-intron	ENST00000541216	ENST00000491654		TCGA	RV	STAD	TCGA-FP-8631-01A	RAP1B	chr12	69004832	+	CSAD	chr12	53555173	-
5UTR-3CDS	ENST00000379122	ENST00000268154		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
5UTR-intron	ENST00000379122	ENST00000560908		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
5UTR-3CDS	ENST00000332496	ENST00000268154		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
5UTR-intron	ENST00000332496	ENST00000560908		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
intron-3CDS	ENST00000560263	ENST00000268154		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
intron-intron	ENST00000560263	ENST00000560908		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
intron-3CDS	ENST00000411539	ENST00000268154		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
intron-intron	ENST00000411539	ENST00000560908		TCGA	RV	STAD	TCGA-BR-7901-01A	SEMA4B	chr15	90728313	+	ZNF710	chr15	90622892	+
In-frame	ENST00000373202	ENST00000373207		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72489050	+
In-frame	ENST00000373202	ENST00000373208		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72489050	+
3UTR-3CDS	ENST00000486993	ENST00000373207		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72489050	+
3UTR-3CDS	ENST00000486993	ENST00000373208		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SGPL1	chr10	72576636	+	ADAMTS14	chr10	72489050	+
Frame-shit	ENST00000240123	ENST00000434536		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
Frame-shit	ENST00000240123	ENST00000252512		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000240123	ENST00000518017		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000240123	ENST00000433566		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
Frame-shit	ENST00000523402	ENST00000434536		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
Frame-shit	ENST00000523402	ENST00000252512		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000523402	ENST00000518017		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000523402	ENST00000433566		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3CDS	ENST00000523740	ENST00000434536		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3CDS	ENST00000523740	ENST00000252512		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3UTR	ENST00000523740	ENST00000518017		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3UTR	ENST00000523740	ENST00000433566		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3CDS	ENST00000428103	ENST00000434536		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3CDS	ENST00000428103	ENST00000252512		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3UTR	ENST00000428103	ENST00000518017		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3UTR	ENST00000428103	ENST00000433566		TCGA	RV	STAD	TCGA-CG-4443-01A	SORBS3	chr8	22412493	+	XPO7	chr8	21824368	+
intron-3CDS	ENST00000230323	ENST00000455140		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000230323	ENST00000248070		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000230323	ENST00000535753		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000230323	ENST00000594975		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000230323	ENST00000602009		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000230323	ENST00000597937		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
In-frame	ENST00000358871	ENST00000455140		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
In-frame	ENST00000358871	ENST00000248070		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5CDS-intron	ENST00000358871	ENST00000535753		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5CDS-intron	ENST00000358871	ENST00000594975		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5CDS-intron	ENST00000358871	ENST00000602009		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5CDS-intron	ENST00000358871	ENST00000597937		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000420312	ENST00000455140		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000420312	ENST00000248070		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000420312	ENST00000535753		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000420312	ENST00000594975		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000420312	ENST00000602009		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000420312	ENST00000597937		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5UTR-3CDS	ENST00000403298	ENST00000455140		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5UTR-3CDS	ENST00000403298	ENST00000248070		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5UTR-intron	ENST00000403298	ENST00000535753		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5UTR-intron	ENST00000403298	ENST00000594975		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5UTR-intron	ENST00000403298	ENST00000602009		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
5UTR-intron	ENST00000403298	ENST00000597937		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000373033	ENST00000455140		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000373033	ENST00000248070		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000373033	ENST00000535753		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000373033	ENST00000594975		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000373033	ENST00000602009		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000373033	ENST00000597937		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000394283	ENST00000455140		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-3CDS	ENST00000394283	ENST00000248070		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000394283	ENST00000535753		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000394283	ENST00000594975		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000394283	ENST00000602009		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
intron-intron	ENST00000394283	ENST00000597937		TCGA	RV	STAD	TCGA-BR-8590-01A	TFEB	chr6	41703884	-	EPS15L1	chr19	16488065	-
Frame-shit	ENST00000437079	ENST00000330394		TCGA	RV	STAD	TCGA-IN-A6RN-01A	VPS8	chr3	184742177	+	EPHB3	chr3	184293618	+
Frame-shit	ENST00000287546	ENST00000330394		TCGA	RV	STAD	TCGA-IN-A6RN-01A	VPS8	chr3	184742177	+	EPHB3	chr3	184293618	+
Frame-shit	ENST00000436792	ENST00000330394		TCGA	RV	STAD	TCGA-IN-A6RN-01A	VPS8	chr3	184742177	+	EPHB3	chr3	184293618	+
Frame-shit	ENST00000446204	ENST00000330394		TCGA	RV	STAD	TCGA-IN-A6RN-01A	VPS8	chr3	184742177	+	EPHB3	chr3	184293618	+
intron-3CDS	ENST00000424463	ENST00000330394		TCGA	RV	STAD	TCGA-IN-A6RN-01A	VPS8	chr3	184742177	+	EPHB3	chr3	184293618	+
intron-3CDS	ENST00000463687	ENST00000330394		TCGA	RV	STAD	TCGA-IN-A6RN-01A	VPS8	chr3	184742177	+	EPHB3	chr3	184293618	+
In-frame	ENST00000287218	ENST00000297153		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
In-frame	ENST00000287218	ENST00000434837		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
In-frame	ENST00000287218	ENST00000505425		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000287218	ENST00000510077		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
In-frame	ENST00000373391	ENST00000297153		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
In-frame	ENST00000373391	ENST00000434837		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
In-frame	ENST00000373391	ENST00000505425		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
5CDS-intron	ENST00000373391	ENST00000510077		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000463847	ENST00000297153		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000463847	ENST00000434837		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
intron-3CDS	ENST00000463847	ENST00000505425		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
intron-intron	ENST00000463847	ENST00000510077		TCGA	RV	STAD	TCGA-BR-4357-01A	ZFAND3	chr6	38084515	+	MDGA1	chr6	37631882	-
In-frame	ENST00000360839	ENST00000265192		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000360839	ENST00000511381		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000360839	ENST00000511706		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000360839	ENST00000394795		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000360839	ENST00000510080		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
In-frame	ENST00000297183	ENST00000265192		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000297183	ENST00000511381		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000297183	ENST00000511706		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000297183	ENST00000394795		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
5CDS-3UTR	ENST00000297183	ENST00000510080		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3CDS	ENST00000394723	ENST00000265192		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394723	ENST00000511381		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394723	ENST00000511706		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394723	ENST00000394795		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394723	ENST00000510080		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3CDS	ENST00000394722	ENST00000265192		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394722	ENST00000511381		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394722	ENST00000511706		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394722	ENST00000394795		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000394722	ENST00000510080		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3CDS	ENST00000462121	ENST00000265192		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000462121	ENST00000511381		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000462121	ENST00000511706		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000462121	ENST00000394795		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000462121	ENST00000510080		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3CDS	ENST00000544120	ENST00000265192		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000544120	ENST00000511381		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000544120	ENST00000511706		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000544120	ENST00000394795		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3UTR	ENST00000544120	ENST00000510080		TCGA	RV	STAD	TCGA-BR-4357-01A	ANKHD1	chr5	139865317	+	PAIP2	chr5	138704422	+
intron-3CDS	ENST00000587728	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000587728	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000587728	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000587728	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000587728	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
intron-3CDS	ENST00000587728	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000358600	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000358600	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000358600	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000358600	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000358600	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000358600	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000357355	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000357355	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000357355	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000357355	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000357355	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000357355	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000242786	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000242786	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000242786	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000242786	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000242786	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000242786	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	CD97	chr19	14492357	+	EPS15L1	chr19	16528448	-
Frame-shit	ENST00000286692	ENST00000369466		TCGA	RV	STAD	TCGA-CG-4475-01A	DRAM2	chr1	111674046	-	TTF2	chr1	117616283	+
5CDS-intron	ENST00000286692	ENST00000480701		TCGA	RV	STAD	TCGA-CG-4475-01A	DRAM2	chr1	111674046	-	TTF2	chr1	117616283	+
5UTR-3CDS	ENST00000484310	ENST00000369466		TCGA	RV	STAD	TCGA-CG-4475-01A	DRAM2	chr1	111674046	-	TTF2	chr1	117616283	+
5UTR-intron	ENST00000484310	ENST00000480701		TCGA	RV	STAD	TCGA-CG-4475-01A	DRAM2	chr1	111674046	-	TTF2	chr1	117616283	+
Frame-shit	ENST00000539140	ENST00000369466		TCGA	RV	STAD	TCGA-CG-4475-01A	DRAM2	chr1	111674046	-	TTF2	chr1	117616283	+
5CDS-intron	ENST00000539140	ENST00000480701		TCGA	RV	STAD	TCGA-CG-4475-01A	DRAM2	chr1	111674046	-	TTF2	chr1	117616283	+
Frame-shit	ENST00000288078	ENST00000288050		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000288078	ENST00000398122		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000288078	ENST00000568530		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000288078	ENST00000562100		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000288078	ENST00000567046		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000288078	ENST00000542659		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000428974	ENST00000288050		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000428974	ENST00000398122		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000428974	ENST00000568530		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000428974	ENST00000562100		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000428974	ENST00000567046		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000428974	ENST00000542659		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
intron-3CDS	ENST00000571514	ENST00000288050		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
intron-3CDS	ENST00000571514	ENST00000398122		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
intron-3CDS	ENST00000571514	ENST00000568530		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
intron-intron	ENST00000571514	ENST00000562100		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
intron-intron	ENST00000571514	ENST00000567046		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
intron-intron	ENST00000571514	ENST00000542659		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000378912	ENST00000288050		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000378912	ENST00000398122		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000378912	ENST00000568530		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000378912	ENST00000562100		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000378912	ENST00000567046		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
5CDS-intron	ENST00000378912	ENST00000542659		TCGA	RV	STAD	TCGA-BR-8289-01A	FUK	chr16	70497175	+	PDPR	chr16	70187294	+
Frame-shit	ENST00000277817	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
Frame-shit	ENST00000412272	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
Frame-shit	ENST00000395198	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
Frame-shit	ENST00000373700	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
3UTR-3CDS	ENST00000395187	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
intron-3CDS	ENST00000480158	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
intron-3CDS	ENST00000492996	ENST00000263102		TCGA	RV	STAD	TCGA-BR-8059-01A	HERC4	chr10	69692354	-	CCDC6	chr10	61554355	-
intron-5UTR	ENST00000409532	ENST00000392584		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
intron-intron	ENST00000409532	ENST00000460481		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
intron-intron	ENST00000409532	ENST00000264108		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-5UTR	ENST00000264107	ENST00000392584		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000264107	ENST00000460481		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000264107	ENST00000264108		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-5UTR	ENST00000343713	ENST00000392584		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000343713	ENST00000460481		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000343713	ENST00000264108		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-5UTR	ENST00000264106	ENST00000392584		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000264106	ENST00000460481		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000264106	ENST00000264108		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-5UTR	ENST00000375221	ENST00000392584		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000375221	ENST00000460481		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000375221	ENST00000264108		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-5UTR	ENST00000409080	ENST00000392584		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000409080	ENST00000460481		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
5CDS-intron	ENST00000409080	ENST00000264108		TCGA	RV	STAD	TCGA-BR-7901-01A	ITGA6	chr2	173292698	+	HAT1	chr2	172809399	+
Frame-shit	ENST00000228495	ENST00000318348		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
Frame-shit	ENST00000228495	ENST00000544393		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
5UTR-3CDS	ENST00000540089	ENST00000318348		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
5UTR-3CDS	ENST00000540089	ENST00000544393		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
5UTR-3CDS	ENST00000424763	ENST00000318348		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
5UTR-3CDS	ENST00000424763	ENST00000544393		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
5UTR-3CDS	ENST00000538161	ENST00000318348		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
5UTR-3CDS	ENST00000538161	ENST00000544393		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
Frame-shit	ENST00000540411	ENST00000318348		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
Frame-shit	ENST00000540411	ENST00000544393		TCGA	RV	STAD	TCGA-BR-8060-01A	KCTD10	chr12	109895797	-	GLTP	chr12	110296546	-
In-frame	ENST00000380542	ENST00000380525		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
In-frame	ENST00000380542	ENST00000397111		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
In-frame	ENST00000380542	ENST00000278224		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
5CDS-intron	ENST00000380542	ENST00000470221		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
5CDS-intron	ENST00000380542	ENST00000401769		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
5CDS-intron	ENST00000380542	ENST00000397114		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
intron-3CDS	ENST00000469089	ENST00000380525		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
intron-3CDS	ENST00000469089	ENST00000397111		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
intron-3CDS	ENST00000469089	ENST00000278224		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
intron-intron	ENST00000469089	ENST00000470221		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
intron-intron	ENST00000469089	ENST00000401769		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
intron-intron	ENST00000469089	ENST00000397114		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
Frame-shit	ENST00000526115	ENST00000380525		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
Frame-shit	ENST00000526115	ENST00000397111		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
Frame-shit	ENST00000526115	ENST00000278224		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
5CDS-intron	ENST00000526115	ENST00000470221		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
5CDS-intron	ENST00000526115	ENST00000401769		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
5CDS-intron	ENST00000526115	ENST00000397114		TCGA	RV	STAD	TCGA-RD-A8N1-01A	NAP1L4	chr11	2999514	-	CARS	chr11	3023830	-
Frame-shit	ENST00000345985	ENST00000315872		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000345985	ENST00000462366		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000345985	ENST00000401753		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
Frame-shit	ENST00000381685	ENST00000315872		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000381685	ENST00000462366		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000381685	ENST00000401753		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
intron-3CDS	ENST00000542668	ENST00000315872		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
intron-intron	ENST00000542668	ENST00000462366		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
intron-intron	ENST00000542668	ENST00000401753		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
Frame-shit	ENST00000538384	ENST00000315872		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000538384	ENST00000462366		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000538384	ENST00000401753		TCGA	RV	STAD	TCGA-BR-8590-01A	NOL10	chr2	10824693	-	ROCK2	chr2	11323566	-
5CDS-intron	ENST00000351960	ENST00000294053		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000538039		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000437826		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000340729		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000543042		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000445069		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000538021		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000351960	ENST00000542555		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000294053		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000538039		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000437826		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000340729		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000543042		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000445069		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000538021		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000358965	ENST00000542555		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000294053		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000538039		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000437826		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000340729		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000543042		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000445069		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000538021		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
5CDS-intron	ENST00000393695	ENST00000542555		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000294053		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000538039		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000437826		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000340729		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000543042		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000445069		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000538021		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
intron-intron	ENST00000543450	ENST00000542555		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	NUMA1	chr11	71746948	-	CLPB	chr11	72119248	-
Frame-shit	ENST00000368279	ENST00000368324		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000368279	ENST00000539162		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000368273	ENST00000368324		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000368273	ENST00000539162		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000368277	ENST00000368324		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000368277	ENST00000539162		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000565805	ENST00000368324		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000565805	ENST00000539162		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000567140	ENST00000368324		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
5CDS-5UTR	ENST00000567140	ENST00000539162		TCGA	RV	STAD	TCGA-BR-8590-01A	PMF1	chr1	156182967	+	SYT11	chr1	155850291	+
Frame-shit	ENST00000358506	ENST00000327757		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
Frame-shit	ENST00000358506	ENST00000422425		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-intron	ENST00000358506	ENST00000541605		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-intron	ENST00000358506	ENST00000329020		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
Frame-shit	ENST00000296122	ENST00000327757		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
Frame-shit	ENST00000296122	ENST00000422425		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-intron	ENST00000296122	ENST00000541605		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-intron	ENST00000296122	ENST00000329020		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
Frame-shit	ENST00000395366	ENST00000327757		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
Frame-shit	ENST00000395366	ENST00000422425		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-intron	ENST00000395366	ENST00000541605		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-intron	ENST00000395366	ENST00000329020		TCGA	RV	STAD	TCGA-CD-A489-01A	PPP1CB	chr2	29006844	+	PLB1	chr2	28820872	+
5CDS-5UTR	ENST00000371621	ENST00000262293		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	PTPN1	chr20	49185015	+	PRR11	chr17	57247109	+
5CDS-5UTR	ENST00000541713	ENST00000262293		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	PTPN1	chr20	49185015	+	PRR11	chr17	57247109	+
intron-intron	ENST00000353411	ENST00000371720		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000353411	ENST00000371717		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000353411	ENST00000399219		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000353411	ENST00000462616		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522552	ENST00000371720		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522552	ENST00000371717		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522552	ENST00000399219		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522552	ENST00000462616		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000521216	ENST00000371720		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000521216	ENST00000371717		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000521216	ENST00000399219		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000521216	ENST00000462616		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000517625	ENST00000371720		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000517625	ENST00000371717		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000517625	ENST00000399219		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000517625	ENST00000462616		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522855	ENST00000371720		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522855	ENST00000371717		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522855	ENST00000399219		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
intron-intron	ENST00000522855	ENST00000462616		TCGA	RV	STAD	TCGA-R5-A7ZF-01A	SKP1	chr5	133561451	-	PMPCA	chr9	139316284	+
5CDS-intron	ENST00000376840	ENST00000485752		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TBC1D8	chr2	101675883	-	RNF149	chr2	101902639	-
5CDS-intron	ENST00000376840	ENST00000295317		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TBC1D8	chr2	101675883	-	RNF149	chr2	101902639	-
5CDS-intron	ENST00000409318	ENST00000485752		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TBC1D8	chr2	101675883	-	RNF149	chr2	101902639	-
5CDS-intron	ENST00000409318	ENST00000295317		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TBC1D8	chr2	101675883	-	RNF149	chr2	101902639	-
intron-intron	ENST00000462819	ENST00000485752		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TBC1D8	chr2	101675883	-	RNF149	chr2	101902639	-
intron-intron	ENST00000462819	ENST00000295317		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TBC1D8	chr2	101675883	-	RNF149	chr2	101902639	-
In-frame	ENST00000372853	ENST00000263801		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372853	ENST00000382039		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372853	ENST00000382044		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372853	ENST00000450115		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
5CDS-intron	ENST00000372853	ENST00000605155		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000452446	ENST00000263801		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000452446	ENST00000382039		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000452446	ENST00000382044		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000452446	ENST00000450115		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
5CDS-intron	ENST00000452446	ENST00000605155		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372850	ENST00000263801		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372850	ENST00000382039		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372850	ENST00000382044		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000372850	ENST00000450115		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
5CDS-intron	ENST00000372850	ENST00000605155		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
Frame-shit	ENST00000372847	ENST00000263801		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
Frame-shit	ENST00000372847	ENST00000382039		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
Frame-shit	ENST00000372847	ENST00000382044		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
Frame-shit	ENST00000372847	ENST00000450115		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
5CDS-intron	ENST00000372847	ENST00000605155		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
3UTR-3CDS	ENST00000483206	ENST00000263801		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
3UTR-3CDS	ENST00000483206	ENST00000382039		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
3UTR-3CDS	ENST00000483206	ENST00000382044		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
3UTR-3CDS	ENST00000483206	ENST00000450115		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
3UTR-intron	ENST00000483206	ENST00000605155		TCGA	RV	STAD	TCGA-BR-8060-01A	URM1	chr9	131140385	+	TP53BP1	chr15	43762264	-
In-frame	ENST00000356136	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000356136	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000356136	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
In-frame	ENST00000528420	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000528420	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5CDS-intron	ENST00000528420	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5UTR-3CDS	ENST00000533454	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5UTR-intron	ENST00000533454	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
5UTR-intron	ENST00000533454	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000531818	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000531818	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000531818	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000532130	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000532130	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000532130	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000539288	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000539288	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000539288	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000525872	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000525872	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000525872	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-3CDS	ENST00000538870	ENST00000371873		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000538870	ENST00000450808		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
intron-intron	ENST00000538870	ENST00000471289		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75672593	+	CMPK1	chr1	47834141	+
In-frame	ENST00000072869	ENST00000425687		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000072869	ENST00000263552		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000072869	ENST00000336425		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000072869	ENST00000436047		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000072869	ENST00000416849		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000072869	ENST00000414508		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000072869	ENST00000448866		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000072869	ENST00000455353		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000072869	ENST00000458722		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000072869	ENST00000411653		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-3UTR	ENST00000072869	ENST00000462275		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000072869	ENST00000539806		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000425687		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000263552		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000336425		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000436047		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000416849		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000414508		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
In-frame	ENST00000476491	ENST00000448866		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000476491	ENST00000455353		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000476491	ENST00000458722		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000476491	ENST00000411653		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-3UTR	ENST00000476491	ENST00000462275		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-intron	ENST00000476491	ENST00000539806		TCGA	RV	STAD	TCGA-CG-4449-01A	ADCK2	chr7	140387041	+	TBXAS1	chr7	139661718	+
5CDS-5UTR	ENST00000434513	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000434513	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000434513	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000434513	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000434513	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000434513	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000434513	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000434513	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000361221	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000361221	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000452522	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000452522	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000375415	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375415	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-intron	ENST00000375420	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-5UTR	ENST00000375420	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-intron	ENST00000469726	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
3UTR-5UTR	ENST00000469726	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000375408	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000375408	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000599470		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000321944		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000358301		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-intron	ENST00000167825	ENST00000597766		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000593690		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000599386		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000435673		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
5CDS-5UTR	ENST00000167825	ENST00000360442		TCGA	RV	STAD	TCGA-CG-4449-01A	ARHGEF10L	chr1	17991090	+	PAK4	chr19	39660172	+
intron-3CDS	ENST00000498829	ENST00000216271		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-3CDS	ENST00000498829	ENST00000448072		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-5UTR	ENST00000498829	ENST00000498366		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-5UTR	ENST00000498829	ENST00000349505		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-3CDS	ENST00000400023	ENST00000216271		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-3CDS	ENST00000400023	ENST00000448072		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-5UTR	ENST00000400023	ENST00000498366		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
intron-5UTR	ENST00000400023	ENST00000349505		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
In-frame	ENST00000405854	ENST00000216271		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
In-frame	ENST00000405854	ENST00000448072		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
5CDS-5UTR	ENST00000405854	ENST00000498366		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
5CDS-5UTR	ENST00000405854	ENST00000349505		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
In-frame	ENST00000444628	ENST00000216271		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
In-frame	ENST00000444628	ENST00000448072		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
5CDS-5UTR	ENST00000444628	ENST00000498366		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
5CDS-5UTR	ENST00000444628	ENST00000349505		TCGA	RV	STAD	TCGA-BR-4357-01A	C22orf34	chr22	50020491	-	HDAC10	chr22	50689334	-
Frame-shit	ENST00000344417	ENST00000452113		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
Frame-shit	ENST00000344417	ENST00000435185		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
Frame-shit	ENST00000344417	ENST00000457091		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
Frame-shit	ENST00000359073	ENST00000452113		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
Frame-shit	ENST00000359073	ENST00000435185		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
Frame-shit	ENST00000359073	ENST00000457091		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
3UTR-3CDS	ENST00000472693	ENST00000452113		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
3UTR-3CDS	ENST00000472693	ENST00000435185		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
3UTR-3CDS	ENST00000472693	ENST00000457091		TCGA	RV	STAD	TCGA-CG-4449-01A	C7orf26	chr7	6634231	+	GRID2IP	chr7	6566400	-
5UTR-5UTR	ENST00000392259	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392259	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392259	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392266	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392266	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264274	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264274	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000432109	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000432109	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000264275	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000264275	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-5UTR	ENST00000392258	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
5UTR-intron	ENST00000392258	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-5UTR	ENST00000490682	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
3UTR-intron	ENST00000490682	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000358485	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000358485	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000309955		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000443227		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000341222		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000340870		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000355558		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000341582		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000342795		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000395148		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000423241		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000490965		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-5UTR	ENST00000323492	ENST00000440180		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000457277		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000494258		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
intron-intron	ENST00000323492	ENST00000479953		TCGA	RV	STAD	TCGA-BR-8361-01A	CASP8	chr2	202098835	+	CFLAR	chr2	201994452	+
Frame-shit	ENST00000373233	ENST00000251642		TCGA	RV	STAD	TCGA-BR-4357-01A	CHD6	chr20	40043826	-	DHX58	chr17	40253964	-
intron-3CDS	ENST00000309279	ENST00000251642		TCGA	RV	STAD	TCGA-BR-4357-01A	CHD6	chr20	40043826	-	DHX58	chr17	40253964	-
intron-3CDS	ENST00000373222	ENST00000251642		TCGA	RV	STAD	TCGA-BR-4357-01A	CHD6	chr20	40043826	-	DHX58	chr17	40253964	-
intron-3CDS	ENST00000480022	ENST00000251642		TCGA	RV	STAD	TCGA-BR-4357-01A	CHD6	chr20	40043826	-	DHX58	chr17	40253964	-
5CDS-intron	ENST00000359651	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8590-01A	ELF3	chr1	201985131	+	DDX21	chr10	70723858	+
3UTR-intron	ENST00000367284	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8590-01A	ELF3	chr1	201985131	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000367283	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8590-01A	ELF3	chr1	201985131	+	DDX21	chr10	70723858	+
intron-intron	ENST00000495848	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8590-01A	ELF3	chr1	201985131	+	DDX21	chr10	70723858	+
5CDS-5UTR	ENST00000374864	ENST00000375114		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000374864	ENST00000246194		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000374864	ENST00000493399		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000535650	ENST00000375114		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000535650	ENST00000246194		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000535650	ENST00000493399		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000262650	ENST00000375114		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000262650	ENST00000246194		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
5CDS-5UTR	ENST00000262650	ENST00000493399		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
3UTR-5UTR	ENST00000483727	ENST00000375114		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
3UTR-5UTR	ENST00000483727	ENST00000246194		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
3UTR-5UTR	ENST00000483727	ENST00000493399		TCGA	RV	STAD	TCGA-CG-4449-01A	ITCH	chr20	33059320	+	RALY	chr20	32659872	+
Frame-shit	ENST00000381340	ENST00000361732		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
Frame-shit	ENST00000381340	ENST00000509734		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
Frame-shit	ENST00000381340	ENST00000354868		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
Frame-shit	ENST00000381340	ENST00000521422		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000504177		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000354312		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000345306		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000305138		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000282891		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000358030		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
5CDS-intron	ENST00000381340	ENST00000380774		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000545902	ENST00000361732		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000545902	ENST00000509734		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000545902	ENST00000354868		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000545902	ENST00000521422		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000504177		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000354312		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000345306		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000305138		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000282891		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000358030		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000545902	ENST00000380774		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000242737	ENST00000361732		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000242737	ENST00000509734		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000242737	ENST00000354868		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-3CDS	ENST00000242737	ENST00000521422		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000504177		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000354312		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000345306		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000305138		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000282891		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000358030		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
intron-intron	ENST00000242737	ENST00000380774		TCGA	RV	STAD	TCGA-BR-8678-01A	ITPR2	chr12	26553061	-	RAD17	chr5	68706320	+
Frame-shit	ENST00000300976	ENST00000269919		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000300976	ENST00000604499		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000300976	ENST00000595066		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000300976	ENST00000252813		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000300976	ENST00000597431		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000595182	ENST00000269919		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000595182	ENST00000604499		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000595182	ENST00000595066		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000595182	ENST00000252813		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000595182	ENST00000597431		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000599006	ENST00000269919		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000599006	ENST00000604499		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
Frame-shit	ENST00000599006	ENST00000595066		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000599006	ENST00000252813		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
5CDS-5UTR	ENST00000599006	ENST00000597431		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000596843	ENST00000269919		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000596843	ENST00000604499		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
intron-3CDS	ENST00000596843	ENST00000595066		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000596843	ENST00000252813		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
intron-5UTR	ENST00000596843	ENST00000597431		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	KLHL26	chr19	18747947	+	PGPEP1	chr19	18466705	+
In-frame	ENST00000360614	ENST00000320699		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000360614	ENST00000309061		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
5CDS-5UTR	ENST00000360614	ENST00000590681		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
Frame-shit	ENST00000585374	ENST00000320699		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
Frame-shit	ENST00000585374	ENST00000309061		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
5CDS-5UTR	ENST00000585374	ENST00000590681		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000593119	ENST00000320699		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000593119	ENST00000309061		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
5CDS-5UTR	ENST00000593119	ENST00000590681		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000540670	ENST00000320699		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000540670	ENST00000309061		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
5CDS-5UTR	ENST00000540670	ENST00000590681		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000590729	ENST00000320699		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
In-frame	ENST00000590729	ENST00000309061		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
5CDS-5UTR	ENST00000590729	ENST00000590681		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
intron-3CDS	ENST00000590511	ENST00000320699		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
intron-3CDS	ENST00000590511	ENST00000309061		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
intron-5UTR	ENST00000590511	ENST00000590681		TCGA	RV	STAD	TCGA-BR-8289-01A	LONP1	chr19	5705783	-	DUS3L	chr19	5790346	-
Frame-shit	ENST00000369705	ENST00000521485		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000369694		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000195649		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000439399		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000428679		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000437520		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000521743		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000520302		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000369705	ENST00000520213		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5CDS-intron	ENST00000369705	ENST00000519133		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000521485		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000369694		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000195649		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000439399		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000428679		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000437520		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000521743		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000520302		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000541327	ENST00000520213		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-intron	ENST00000541327	ENST00000519133		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000521485		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000369694		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000195649		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000439399		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000428679		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000437520		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000521743		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000520302		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-3CDS	ENST00000543031	ENST00000520213		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
5UTR-intron	ENST00000543031	ENST00000519133		TCGA	RV	STAD	TCGA-BR-8373-01A	ME1	chr6	84140596	-	SNAP91	chr6	84350921	-
Frame-shit	ENST00000405201	ENST00000308736		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000405201	ENST00000544745		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000404621	ENST00000308736		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000404621	ENST00000544745		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000404121	ENST00000308736		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000404121	ENST00000544745		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000356219	ENST00000308736		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000356219	ENST00000544745		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000397355	ENST00000308736		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000397355	ENST00000544745		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000429285	ENST00000308736		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
Frame-shit	ENST00000429285	ENST00000544745		TCGA	RV	STAD	TCGA-CG-4449-01A	NCOR2	chr12	124846672	-	DHX37	chr12	125435350	-
5UTR-3CDS	ENST00000478423	ENST00000302938		TCGA	RV	STAD	TCGA-VQ-A91S-01A	NPHP4	chr1	6007164	-	FAM71B	chr5	156590669	-
Frame-shit	ENST00000378156	ENST00000302938		TCGA	RV	STAD	TCGA-VQ-A91S-01A	NPHP4	chr1	6007164	-	FAM71B	chr5	156590669	-
5CDS-5UTR	ENST00000264833	ENST00000587708		TCGA	RV	STAD	TCGA-BR-7197-01A	OLFM2	chr19	10046980	-	PSENEN	chr19	36236736	+
5CDS-5UTR	ENST00000264833	ENST00000591949		TCGA	RV	STAD	TCGA-BR-7197-01A	OLFM2	chr19	10046980	-	PSENEN	chr19	36236736	+
5CDS-intron	ENST00000264833	ENST00000222266		TCGA	RV	STAD	TCGA-BR-7197-01A	OLFM2	chr19	10046980	-	PSENEN	chr19	36236736	+
intron-5UTR	ENST00000590841	ENST00000587708		TCGA	RV	STAD	TCGA-BR-7197-01A	OLFM2	chr19	10046980	-	PSENEN	chr19	36236736	+
intron-5UTR	ENST00000590841	ENST00000591949		TCGA	RV	STAD	TCGA-BR-7197-01A	OLFM2	chr19	10046980	-	PSENEN	chr19	36236736	+
intron-intron	ENST00000590841	ENST00000222266		TCGA	RV	STAD	TCGA-BR-7197-01A	OLFM2	chr19	10046980	-	PSENEN	chr19	36236736	+
In-frame	ENST00000545260	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545260	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545260	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545260	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545260	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545260	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545260	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545260	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545693	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545693	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545693	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000545693	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545693	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545693	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545693	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000545693	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000350537	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000350537	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000350537	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000350537	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000350537	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000350537	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000350537	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000350537	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000346874	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000346874	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000346874	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000346874	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000346874	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000346874	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000346874	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000346874	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374789	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374789	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374789	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374789	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374789	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374789	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374789	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374789	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374790	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374790	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374790	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374790	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374790	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374790	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374790	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374790	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374794	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374794	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374794	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374794	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374794	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374794	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374794	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374794	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374788	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374788	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374788	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374788	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374788	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374788	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374788	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374788	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000466092	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000466092	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000466092	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000466092	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000466092	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000466092	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000466092	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000466092	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374776	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374776	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374776	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374776	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374776	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374776	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374776	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374776	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000340077	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000340077	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000340077	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000340077	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000340077	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000340077	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000340077	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000340077	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000544292	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000544292	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000544292	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000544292	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000544292	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000544292	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000544292	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000544292	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374773	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374773	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374773	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
In-frame	ENST00000374773	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374773	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374773	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374773	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
5CDS-intron	ENST00000374773	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000374768	ENST00000435459		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000374768	ENST00000383787		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000374768	ENST00000383785		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000374768	ENST00000383788		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000374768	ENST00000603752		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000374768	ENST00000383781		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000374768	ENST00000603808		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-intron	ENST00000374768	ENST00000383786		TCGA	RV	STAD	TCGA-BR-8365-01A	PARD3	chr10	34759013	-	COLQ	chr3	15520889	-
intron-3CDS	ENST00000448838	ENST00000241052		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
intron-intron	ENST00000448838	ENST00000534710		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
Frame-shit	ENST00000227868	ENST00000241052		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000227868	ENST00000534710		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
Frame-shit	ENST00000430469	ENST00000241052		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000430469	ENST00000534710		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
intron-3CDS	ENST00000477173	ENST00000241052		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
intron-intron	ENST00000477173	ENST00000534710		TCGA	RV	STAD	TCGA-BR-4357-01A	PDHX	chr11	34938362	+	CAT	chr11	34470739	+
5CDS-intron	ENST00000257821	ENST00000298834		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000426438		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000314845		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000533727		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000534300		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000458649		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000528950		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000257821	ENST00000529963		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000298834		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000426438		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000314845		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000533727		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000534300		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000458649		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000528950		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000323180	ENST00000529963		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000298834		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000426438		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000314845		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000533727		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000534300		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000458649		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000528950		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
5CDS-intron	ENST00000418153	ENST00000529963		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000298834		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000426438		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000314845		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000533727		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000534300		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000458649		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000528950		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
intron-intron	ENST00000527753	ENST00000529963		TCGA	RV	STAD	TCGA-BR-4357-01A	PHF21A	chr11	46098305	-	AMBRA1	chr11	46529920	-
In-frame	ENST00000356763	ENST00000514044		TCGA	RV	STAD	TCGA-CG-4443-01A	PIK3R4	chr3	130447307	-	ASTE1	chr3	130735183	-
In-frame	ENST00000356763	ENST00000264992		TCGA	RV	STAD	TCGA-CG-4443-01A	PIK3R4	chr3	130447307	-	ASTE1	chr3	130735183	-
intron-3CDS	ENST00000512677	ENST00000514044		TCGA	RV	STAD	TCGA-CG-4443-01A	PIK3R4	chr3	130447307	-	ASTE1	chr3	130735183	-
intron-3CDS	ENST00000512677	ENST00000264992		TCGA	RV	STAD	TCGA-CG-4443-01A	PIK3R4	chr3	130447307	-	ASTE1	chr3	130735183	-
5CDS-3UTR	ENST00000265631	ENST00000481123		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
5CDS-3UTR	ENST00000265631	ENST00000297534		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
5CDS-3UTR	ENST00000416240	ENST00000481123		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
5CDS-3UTR	ENST00000416240	ENST00000297534		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
5UTR-3UTR	ENST00000542654	ENST00000481123		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
5UTR-3UTR	ENST00000542654	ENST00000297534		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
intron-3UTR	ENST00000494085	ENST00000481123		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
intron-3UTR	ENST00000494085	ENST00000297534		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	C7orf55	chr7	139030247	+
5UTR-3UTR	ENST00000553127	ENST00000339976		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000553127	ENST00000004980		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000553127	ENST00000448372		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000553127	ENST00000551330		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000553127	ENST00000549518		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000553127	ENST00000549595		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-intron	ENST00000553127	ENST00000547886		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000321898	ENST00000339976		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000321898	ENST00000004980		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000321898	ENST00000448372		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000321898	ENST00000551330		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000321898	ENST00000549518		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000321898	ENST00000549595		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-intron	ENST00000321898	ENST00000547886		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000552918	ENST00000339976		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000552918	ENST00000004980		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000552918	ENST00000448372		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000552918	ENST00000551330		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000552918	ENST00000549518		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000552918	ENST00000549595		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-intron	ENST00000552918	ENST00000547886		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000547865	ENST00000339976		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000547865	ENST00000004980		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000547865	ENST00000448372		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000547865	ENST00000551330		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000547865	ENST00000549518		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-3UTR	ENST00000547865	ENST00000549595		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
5UTR-intron	ENST00000547865	ENST00000547886		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000552557	ENST00000339976		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000552557	ENST00000004980		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000552557	ENST00000448372		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000552557	ENST00000551330		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000552557	ENST00000549518		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-3UTR	ENST00000552557	ENST00000549595		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
intron-intron	ENST00000552557	ENST00000547886		TCGA	RV	STAD	TCGA-BR-4367-01A	SPATS2	chr12	49765073	+	SENP1	chr12	48465504	-
In-frame	ENST00000040877	ENST00000371073		TCGA	RV	STAD	TCGA-BR-4366-01A	TARBP1	chr1	234593413	-	CACHD1	chr1	65047839	+
In-frame	ENST00000040877	ENST00000290039		TCGA	RV	STAD	TCGA-BR-4366-01A	TARBP1	chr1	234593413	-	CACHD1	chr1	65047839	+
5CDS-3UTR	ENST00000040877	ENST00000495994		TCGA	RV	STAD	TCGA-BR-4366-01A	TARBP1	chr1	234593413	-	CACHD1	chr1	65047839	+
intron-3CDS	ENST00000483404	ENST00000371073		TCGA	RV	STAD	TCGA-BR-4366-01A	TARBP1	chr1	234593413	-	CACHD1	chr1	65047839	+
intron-3CDS	ENST00000483404	ENST00000290039		TCGA	RV	STAD	TCGA-BR-4366-01A	TARBP1	chr1	234593413	-	CACHD1	chr1	65047839	+
intron-3UTR	ENST00000483404	ENST00000495994		TCGA	RV	STAD	TCGA-BR-4366-01A	TARBP1	chr1	234593413	-	CACHD1	chr1	65047839	+
In-frame	ENST00000332149	ENST00000399215		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000481477		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000399212		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000332131		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000399205		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000399208		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000399201		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000332149	ENST00000399207		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
In-frame	ENST00000398585	ENST00000399215		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000481477		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000399212		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000332131		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000399205		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000399208		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000399201		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000398585	ENST00000399207		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
Frame-shit	ENST00000458356	ENST00000399215		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000481477		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000399212		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000332131		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000399205		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000399208		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000399201		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5CDS-5UTR	ENST00000458356	ENST00000399207		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-3CDS	ENST00000497881	ENST00000399215		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000481477		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000399212		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000332131		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000399205		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000399208		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000399201		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
intron-5UTR	ENST00000497881	ENST00000399207		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	TMPRSS2	chr21	42860321	-	SETD4	chr21	37429502	-
5UTR-3CDS	ENST00000437079	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000437079	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000437079	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000437079	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-5UTR	ENST00000437079	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000287546	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000287546	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000287546	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000287546	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-5UTR	ENST00000287546	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000436792	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000436792	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000436792	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000436792	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-5UTR	ENST00000436792	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000446204	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000446204	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000446204	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-3CDS	ENST00000446204	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
5UTR-5UTR	ENST00000446204	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000424463	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000424463	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000424463	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000424463	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-5UTR	ENST00000424463	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000463687	ENST00000436648		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000463687	ENST00000321919		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000463687	ENST00000381983		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000463687	ENST00000591451		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
intron-5UTR	ENST00000463687	ENST00000586901		TCGA	RV	STAD	TCGA-CG-4477-01A	VPS8	chr3	184530013	+	GLYR1	chr16	4882913	-
In-frame	ENST00000487338	ENST00000541742		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
In-frame	ENST00000487338	ENST00000490107		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
In-frame	ENST00000487338	ENST00000388985		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000487338	ENST00000366517		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000487338	ENST00000403792		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000498046	ENST00000541742		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000498046	ENST00000490107		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5UTR-3CDS	ENST00000498046	ENST00000388985		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5UTR-5UTR	ENST00000498046	ENST00000366517		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5UTR-intron	ENST00000498046	ENST00000403792		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
In-frame	ENST00000339986	ENST00000541742		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
In-frame	ENST00000339986	ENST00000490107		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
In-frame	ENST00000339986	ENST00000388985		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000339986	ENST00000366517		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000339986	ENST00000403792		TCGA	RV	STAD	TCGA-BR-4369-01A	ZNF695	chr1	247171208	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000532485	ENST00000533988		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000524490		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000334736		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000343878		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000525959		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000533248		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000525919		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000524767		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000525038		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000532485	ENST00000529032		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000533988		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000524490		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000334736		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000343878		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000525959		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000533248		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000525919		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000524767		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000525038		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
3UTR-intron	ENST00000530182	ENST00000529032		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000533988		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000524490		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000334736		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000343878		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000525959		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000533248		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000525919		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000524767		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000525038		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000526597	ENST00000529032		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000533988		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000524490		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000334736		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000343878		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000525959		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000533248		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000525919		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000524767		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000525038		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-intron	ENST00000533873	ENST00000529032		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000533988		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000524490		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000334736		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000343878		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000525959		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000533248		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000525919		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000524767		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000525038		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5UTR-intron	ENST00000538157	ENST00000529032		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000533988		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000524490		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000334736		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000343878		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000525959		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000533248		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000525919		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000524767		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000525038		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
intron-intron	ENST00000544113	ENST00000529032		TCGA	RV	STAD	TCGA-BR-4366-01A	ACER3	chr11	76572123	+	C11orf30	chr11	76248839	+
5CDS-3UTR	ENST00000311380	ENST00000302418		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-intron	ENST00000311380	ENST00000493889		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-3UTR	ENST00000375250	ENST00000302418		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-intron	ENST00000375250	ENST00000493889		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
intron-3UTR	ENST00000492028	ENST00000302418		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
intron-intron	ENST00000492028	ENST00000493889		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-3UTR	ENST00000344936	ENST00000302418		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-intron	ENST00000344936	ENST00000493889		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-3UTR	ENST00000396144	ENST00000302418		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-intron	ENST00000396144	ENST00000493889		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-3UTR	ENST00000375245	ENST00000302418		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
5CDS-intron	ENST00000375245	ENST00000493889		TCGA	RV	STAD	TCGA-BR-4357-01A	ARHGAP12	chr10	32197100	-	KIF5B	chr10	32300444	-
Frame-shit	ENST00000338458	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
Frame-shit	ENST00000338458	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000338458	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000338458	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000338458	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000338458	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000496106	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000496106	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000496106	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000496106	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000496106	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000496106	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000498517	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000498517	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000498517	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000498517	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000498517	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000498517	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000296315	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000296315	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000296315	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000296315	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000296315	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000296315	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000413728	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000413728	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000413728	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000413728	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000413728	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000413728	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000497267	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000497267	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000497267	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000497267	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000497267	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000497267	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000495373	ENST00000304623		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000495373	ENST00000359640		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000495373	ENST00000511377		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000495373	ENST00000458100		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000495373	ENST00000503622		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
intron-intron	ENST00000495373	ENST00000495388		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGEF3	chr3	57069116	-	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000395526	ENST00000361781		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000395526	ENST00000429490		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000395526	ENST00000492601		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000395526	ENST00000361543		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
intron-5UTR	ENST00000443575	ENST00000361781		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
intron-intron	ENST00000443575	ENST00000429490		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
intron-5UTR	ENST00000443575	ENST00000492601		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
intron-intron	ENST00000443575	ENST00000361543		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000447815	ENST00000361781		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000447815	ENST00000429490		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000447815	ENST00000492601		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000447815	ENST00000361543		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000329428	ENST00000361781		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000329428	ENST00000429490		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-5UTR	ENST00000329428	ENST00000492601		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000329428	ENST00000361543		TCGA	RV	STAD	TCGA-CG-4443-01A	ASAH2	chr10	52002962	-	SGMS1	chr10	52104105	-
5CDS-intron	ENST00000394919	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394919	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394919	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394919	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394919	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394919	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394919	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000342444	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317168	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000545550	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000317126	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5CDS-intron	ENST00000394915	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000398842		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000398809		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000461841		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000299366		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000224721		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000398788		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
intron-intron	ENST00000492502	ENST00000475158		TCGA	RV	STAD	TCGA-CG-4449-01A	ASCC1	chr10	73956569	-	CDH23	chr10	73537437	+
5UTR-5UTR	ENST00000355831	ENST00000487143		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000355831	ENST00000355999		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000343439	ENST00000487143		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000343439	ENST00000355999		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000392782	ENST00000487143		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000392782	ENST00000355999		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000392783	ENST00000487143		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000392783	ENST00000355999		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000483316	ENST00000487143		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5UTR-5UTR	ENST00000483316	ENST00000355999		TCGA	RV	STAD	TCGA-BR-A4CR-01A	BAZ2B	chr2	160412334	-	STK39	chr2	168931741	-
5CDS-5UTR	ENST00000265689	ENST00000376042		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000265689	ENST00000376038		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000265689	ENST00000348603		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000265689	ENST00000276014		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-3UTR	ENST00000265689	ENST00000493507		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
intron-5UTR	ENST00000533728	ENST00000376042		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
intron-5UTR	ENST00000533728	ENST00000376038		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
intron-5UTR	ENST00000533728	ENST00000348603		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
intron-5UTR	ENST00000533728	ENST00000276014		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
intron-3UTR	ENST00000533728	ENST00000493507		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000356135	ENST00000376042		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000356135	ENST00000376038		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000356135	ENST00000348603		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-5UTR	ENST00000356135	ENST00000276014		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
5CDS-3UTR	ENST00000356135	ENST00000493507		TCGA	RV	STAD	TCGA-BR-8687-01A	CHKA	chr11	67888295	-	CCNB3	chrX	50027542	+
Frame-shit	ENST00000367160	ENST00000367142		TCGA	RV	STAD	TCGA-BR-8590-01A	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000367160	ENST00000464938		TCGA	RV	STAD	TCGA-BR-8590-01A	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
Frame-shit	ENST00000367161	ENST00000367142		TCGA	RV	STAD	TCGA-BR-8590-01A	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000367161	ENST00000464938		TCGA	RV	STAD	TCGA-BR-8590-01A	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
Frame-shit	ENST00000367162	ENST00000367142		TCGA	RV	STAD	TCGA-BR-8590-01A	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
5CDS-intron	ENST00000367162	ENST00000464938		TCGA	RV	STAD	TCGA-BR-8590-01A	DSTYK	chr1	205180399	-	NUCKS1	chr1	205698749	-
intron-intron	ENST00000441802	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000441802	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000441802	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000441802	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000441802	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000441802	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000512347	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000512347	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000512347	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000512347	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000512347	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
intron-intron	ENST00000512347	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8680-01A	FAT1	chr4	187508949	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000335255	ENST00000508628		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
Frame-shit	ENST00000335255	ENST00000456466		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
Frame-shit	ENST00000335255	ENST00000582970		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
Frame-shit	ENST00000335255	ENST00000319921		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
5CDS-intron	ENST00000335255	ENST00000336301		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
5CDS-intron	ENST00000335255	ENST00000427003		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
intron-3CDS	ENST00000529652	ENST00000508628		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
intron-3CDS	ENST00000529652	ENST00000456466		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
intron-3CDS	ENST00000529652	ENST00000582970		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
intron-3CDS	ENST00000529652	ENST00000319921		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
intron-intron	ENST00000529652	ENST00000336301		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
intron-intron	ENST00000529652	ENST00000427003		TCGA	RV	STAD	TCGA-BR-8590-01A	FOXK2	chr17	80478183	+	RNF213	chr17	78261614	+
Frame-shit	ENST00000426820	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000426820	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000426820	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369559	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369559	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000369559	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369554	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369554	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000369554	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369558	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369558	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000369558	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369561	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369561	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000369561	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369555	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369555	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000369555	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000340480	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000340480	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000340480	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369553	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000369553	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000369553	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000406344	ENST00000371370		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
Frame-shit	ENST00000406344	ENST00000319223		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
5CDS-3UTR	ENST00000406344	ENST00000477905		TCGA	RV	STAD	TCGA-CG-4449-01A	HIPK1	chr1	114505060	+	LRRC42	chr1	54427707	+
In-frame	ENST00000395086	ENST00000359655		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	HKDC1	chr10	71010408	+	SUPV3L1	chr10	70951411	+
5CDS-3UTR	ENST00000395086	ENST00000483572		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	HKDC1	chr10	71010408	+	SUPV3L1	chr10	70951411	+
In-frame	ENST00000354624	ENST00000359655		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	HKDC1	chr10	71010408	+	SUPV3L1	chr10	70951411	+
5CDS-3UTR	ENST00000354624	ENST00000483572		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	HKDC1	chr10	71010408	+	SUPV3L1	chr10	70951411	+
intron-3CDS	ENST00000488706	ENST00000359655		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	HKDC1	chr10	71010408	+	SUPV3L1	chr10	70951411	+
intron-3UTR	ENST00000488706	ENST00000483572		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	HKDC1	chr10	71010408	+	SUPV3L1	chr10	70951411	+
5CDS-5UTR	ENST00000341500	ENST00000590320		TCGA	RV	STAD	TCGA-CD-8533-01A	INSR	chr19	7267356	-	S1PR2	chr19	10335623	-
5CDS-5UTR	ENST00000302850	ENST00000590320		TCGA	RV	STAD	TCGA-CD-8533-01A	INSR	chr19	7267356	-	S1PR2	chr19	10335623	-
In-frame	ENST00000419727	ENST00000238571		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000419727	ENST00000325680		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000419727	ENST00000552421		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
5CDS-intron	ENST00000419727	ENST00000546901		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
3UTR-3CDS	ENST00000559773	ENST00000238571		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
3UTR-3CDS	ENST00000559773	ENST00000325680		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
3UTR-3CDS	ENST00000559773	ENST00000552421		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
3UTR-intron	ENST00000559773	ENST00000546901		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000437176	ENST00000238571		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000437176	ENST00000325680		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000437176	ENST00000552421		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
5CDS-intron	ENST00000437176	ENST00000546901		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000435893	ENST00000238571		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000435893	ENST00000325680		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000435893	ENST00000552421		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
5CDS-intron	ENST00000435893	ENST00000546901		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000267569	ENST00000238571		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000267569	ENST00000325680		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
In-frame	ENST00000267569	ENST00000552421		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
5CDS-intron	ENST00000267569	ENST00000546901		TCGA	RV	STAD	TCGA-BR-4357-01A	JDP2	chr14	75904824	+	YLPM1	chr14	75276083	+
5UTR-5UTR	ENST00000373731	ENST00000357641		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000373731	ENST00000339717		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000373731	ENST00000534694		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000373731	ENST00000543502		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000373731	ENST00000443324		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000373731	ENST00000534400		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
3UTR-5UTR	ENST00000474988	ENST00000357641		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
3UTR-5UTR	ENST00000474988	ENST00000339717		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
3UTR-5UTR	ENST00000474988	ENST00000534694		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
3UTR-5UTR	ENST00000474988	ENST00000543502		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
3UTR-5UTR	ENST00000474988	ENST00000443324		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
3UTR-5UTR	ENST00000474988	ENST00000534400		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000544295	ENST00000357641		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000544295	ENST00000339717		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000544295	ENST00000534694		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000544295	ENST00000543502		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000544295	ENST00000443324		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000544295	ENST00000534400		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000449081	ENST00000357641		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000449081	ENST00000339717		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000449081	ENST00000534694		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000449081	ENST00000543502		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000449081	ENST00000443324		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000449081	ENST00000534400		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000536244	ENST00000357641		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000536244	ENST00000339717		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000536244	ENST00000534694		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000536244	ENST00000543502		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000536244	ENST00000443324		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5UTR-5UTR	ENST00000536244	ENST00000534400		TCGA	RV	STAD	TCGA-VQ-A91N-01A	KCTD20	chr6	36410888	+	BRPF3	chr6	36168074	+
5CDS-intron	ENST00000394375	ENST00000513761		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394375	ENST00000347613		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394375	ENST00000360642		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394375	ENST00000504131		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394375	ENST00000506924		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000608620	ENST00000513761		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000608620	ENST00000347613		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000608620	ENST00000360642		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000608620	ENST00000504131		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000608620	ENST00000506924		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000238983	ENST00000513761		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000238983	ENST00000347613		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000238983	ENST00000360642		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000238983	ENST00000504131		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000238983	ENST00000506924		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000355843	ENST00000513761		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000355843	ENST00000347613		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000355843	ENST00000360642		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000355843	ENST00000504131		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000355843	ENST00000506924		TCGA	RV	STAD	TCGA-BR-8485-01A	LIPF	chr10	90438568	+	CLCN3	chr4	170623929	+
Frame-shit	ENST00000421307	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000421307	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000421307	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
Frame-shit	ENST00000354379	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000354379	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000354379	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
Frame-shit	ENST00000336686	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000336686	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000336686	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
Frame-shit	ENST00000421276	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000421276	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000421276	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
Frame-shit	ENST00000396428	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000396428	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000396428	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
Frame-shit	ENST00000440230	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000440230	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
5CDS-intron	ENST00000440230	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
intron-3CDS	ENST00000490597	ENST00000336596		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
intron-intron	ENST00000490597	ENST00000452448		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
intron-intron	ENST00000490597	ENST00000494014		TCGA	RV	STAD	TCGA-BR-4363-01A	LRRFIP2	chr3	37190385	-	EPHA3	chr3	89521614	+
In-frame	ENST00000223324	ENST00000297001		TCGA	RV	STAD	TCGA-BR-7959-01A	MRPL32	chr7	42972115	+	C7orf72	chr7	50143910	+
intron-3CDS	ENST00000496564	ENST00000297001		TCGA	RV	STAD	TCGA-BR-7959-01A	MRPL32	chr7	42972115	+	C7orf72	chr7	50143910	+
Frame-shit	ENST00000530878	ENST00000420696		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000530878	ENST00000401534		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000530878	ENST00000559240		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000530878	ENST00000367897		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000530878	ENST00000540236		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000530878	ENST00000560641		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000530878	ENST00000474046		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000530878	ENST00000485769		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000530878	ENST00000540246		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000361897	ENST00000420696		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000361897	ENST00000401534		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000361897	ENST00000559240		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000361897	ENST00000367897		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000361897	ENST00000540236		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000361897	ENST00000560641		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000361897	ENST00000474046		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000361897	ENST00000485769		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
5CDS-intron	ENST00000361897	ENST00000540246		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000493151	ENST00000420696		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000493151	ENST00000401534		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000493151	ENST00000559240		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000493151	ENST00000367897		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000493151	ENST00000540236		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000493151	ENST00000560641		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000493151	ENST00000474046		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000493151	ENST00000485769		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000493151	ENST00000540246		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000454693	ENST00000420696		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000454693	ENST00000401534		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000454693	ENST00000559240		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000454693	ENST00000367897		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-3CDS	ENST00000454693	ENST00000540236		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000454693	ENST00000560641		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000454693	ENST00000474046		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000454693	ENST00000485769		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
intron-intron	ENST00000454693	ENST00000540246		TCGA	RV	STAD	TCGA-CG-4460-01A	NOS1AP	chr1	162040072	+	PBX1	chr1	164532475	+
Frame-shit	ENST00000423245	ENST00000207549		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000423245	ENST00000412096		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
5CDS-5UTR	ENST00000423245	ENST00000587504		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000317905	ENST00000207549		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000317905	ENST00000412096		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
5CDS-5UTR	ENST00000317905	ENST00000587504		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000420326	ENST00000207549		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000420326	ENST00000412096		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
5CDS-5UTR	ENST00000420326	ENST00000587504		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000340830	ENST00000207549		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000340830	ENST00000412096		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
5CDS-5UTR	ENST00000340830	ENST00000587504		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000584999	ENST00000207549		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
Frame-shit	ENST00000584999	ENST00000412096		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
5CDS-5UTR	ENST00000584999	ENST00000587504		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
intron-3CDS	ENST00000443199	ENST00000207549		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
intron-3CDS	ENST00000443199	ENST00000412096		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
intron-5UTR	ENST00000443199	ENST00000587504		TCGA	RV	STAD	TCGA-BR-8678-01A	RECQL5	chr17	73654378	-	UNC13D	chr17	73839347	-
5CDS-5UTR	ENST00000252542	ENST00000360565		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	SAFB2	chr19	5604594	-	SCAF1	chr19	50148278	+
5UTR-5UTR	ENST00000591310	ENST00000360565		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	SAFB2	chr19	5604594	-	SCAF1	chr19	50148278	+
Frame-shit	ENST00000266088	ENST00000248975		TCGA	RV	STAD	TCGA-BR-8382-01A	SLC5A1	chr22	32500878	+	YWHAH	chr22	32352126	+
In-frame	ENST00000266088	ENST00000397492		TCGA	RV	STAD	TCGA-BR-8382-01A	SLC5A1	chr22	32500878	+	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000266088	ENST00000471374		TCGA	RV	STAD	TCGA-BR-8382-01A	SLC5A1	chr22	32500878	+	YWHAH	chr22	32352126	+
Frame-shit	ENST00000543737	ENST00000248975		TCGA	RV	STAD	TCGA-BR-8382-01A	SLC5A1	chr22	32500878	+	YWHAH	chr22	32352126	+
In-frame	ENST00000543737	ENST00000397492		TCGA	RV	STAD	TCGA-BR-8382-01A	SLC5A1	chr22	32500878	+	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000543737	ENST00000471374		TCGA	RV	STAD	TCGA-BR-8382-01A	SLC5A1	chr22	32500878	+	YWHAH	chr22	32352126	+
In-frame	ENST00000355327	ENST00000260408		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-intron	ENST00000355327	ENST00000402627		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-intron	ENST00000355327	ENST00000561288		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-intron	ENST00000355327	ENST00000396140		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-5UTR	ENST00000355327	ENST00000558733		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
In-frame	ENST00000261862	ENST00000260408		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-intron	ENST00000261862	ENST00000402627		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-intron	ENST00000261862	ENST00000561288		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-intron	ENST00000261862	ENST00000396140		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
5CDS-5UTR	ENST00000261862	ENST00000558733		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-3CDS	ENST00000357769	ENST00000260408		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-intron	ENST00000357769	ENST00000402627		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-intron	ENST00000357769	ENST00000561288		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-intron	ENST00000357769	ENST00000396140		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-5UTR	ENST00000357769	ENST00000558733		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-3CDS	ENST00000567838	ENST00000260408		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-intron	ENST00000567838	ENST00000402627		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-intron	ENST00000567838	ENST00000561288		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-intron	ENST00000567838	ENST00000396140		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
intron-5UTR	ENST00000567838	ENST00000558733		TCGA	RV	STAD	TCGA-CG-4444-01A	THSD4	chr15	71549054	+	ADAM10	chr15	58957396	-
In-frame	ENST00000366277	ENST00000369983		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000366277	ENST00000476019		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
In-frame	ENST00000238936	ENST00000369983		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000238936	ENST00000476019		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
intron-3CDS	ENST00000369931	ENST00000369983		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
intron-intron	ENST00000369931	ENST00000476019		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
intron-3CDS	ENST00000450947	ENST00000369983		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
intron-intron	ENST00000450947	ENST00000476019		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM180	chr10	104233769	+	GBF1	chr10	104111013	+
In-frame	ENST00000359626	ENST00000297071		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
In-frame	ENST00000359626	ENST00000392502		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
In-frame	ENST00000359626	ENST00000538367		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
5CDS-5UTR	ENST00000359626	ENST00000474586		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
intron-3CDS	ENST00000491969	ENST00000297071		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
intron-3CDS	ENST00000491969	ENST00000392502		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
intron-3CDS	ENST00000491969	ENST00000538367		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
intron-5UTR	ENST00000491969	ENST00000474586		TCGA	RV	STAD	TCGA-CG-4443-01A	TYW1	chr7	66582605	+	TRA2A	chr7	23552701	-
Frame-shit	ENST00000356136	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000356136	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000356136	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000356136	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000528420	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000528420	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000528420	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000528420	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000533454	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000533454	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000533454	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000533454	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000531818	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000531818	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000531818	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000531818	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000532130	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000532130	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000532130	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000532130	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
Frame-shit	ENST00000539288	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000539288	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000539288	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000539288	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-3CDS	ENST00000525872	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-intron	ENST00000525872	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-intron	ENST00000525872	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-intron	ENST00000525872	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-3CDS	ENST00000538870	ENST00000337019		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-intron	ENST00000538870	ENST00000366889		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-intron	ENST00000538870	ENST00000366888		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
intron-intron	ENST00000538870	ENST00000542669		TCGA	RV	STAD	TCGA-BR-4366-01A	UVRAG	chr11	75776832	+	PACRG	chr6	163733811	+
5CDS-intron	ENST00000544301	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000544301	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000544301	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000544301	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000544301	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000544301	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000224237	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000224237	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000224237	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000224237	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000224237	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000224237	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
intron-intron	ENST00000485947	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
intron-intron	ENST00000485947	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
intron-intron	ENST00000485947	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
intron-intron	ENST00000485947	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
intron-intron	ENST00000485947	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
intron-intron	ENST00000485947	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8682-01A	VIM	chr10	17279584	+	STAT6	chr12	57496773	-
5CDS-5UTR	ENST00000400590	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000400590	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000400590	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000400590	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000400590	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000400590	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000400590	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000320220	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000320220	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000320220	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000320220	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000320220	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000320220	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000320220	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000382466	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000382466	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000382466	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000382466	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000382466	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000382466	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000382466	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000542645	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000542645	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000542645	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000542645	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000542645	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000542645	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000542645	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000415724	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000415724	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000415724	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000415724	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000415724	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000415724	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000415724	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000422251	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-5UTR	ENST00000422251	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000422251	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000422251	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000422251	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000422251	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5CDS-intron	ENST00000422251	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-5UTR	ENST00000494731	ENST00000424834		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-5UTR	ENST00000494731	ENST00000382108		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000494731	ENST00000382095		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000494731	ENST00000474317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000494731	ENST00000399949		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000494731	ENST00000409126		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
5UTR-intron	ENST00000494731	ENST00000343003		TCGA	RV	STAD	TCGA-VQ-AA68-01A	ZDHHC20	chr13	21987791	-	SPATA13	chr13	24796957	+
Frame-shit	ENST00000369405	ENST00000534894		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000536810		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000545257		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000355995		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000543371		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000355717		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000538897		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000349937		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000369397		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000352065		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369405	ENST00000369395		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000369405	ENST00000542695		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000369405	ENST00000369389		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000369405	ENST00000369386		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000369405	ENST00000466338		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000534894		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000536810		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000545257		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000355995		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000543371		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000355717		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000538897		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000349937		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000369397		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000352065		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000369404	ENST00000369395		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000369404	ENST00000542695		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000369404	ENST00000369389		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000369404	ENST00000369386		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000369404	ENST00000466338		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000534894		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000536810		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000545257		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000355995		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000543371		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000355717		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000538897		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000349937		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000369397		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000352065		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000482410	ENST00000369395		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000482410	ENST00000542695		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-intron	ENST00000482410	ENST00000369389		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-intron	ENST00000482410	ENST00000369386		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
intron-intron	ENST00000482410	ENST00000466338		TCGA	RV	STAD	TCGA-CG-4449-01A	ZDHHC6	chr10	114194055	-	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000446014	ENST00000436648		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000446014	ENST00000321919		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000446014	ENST00000381983		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000446014	ENST00000591451		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
5CDS-5UTR	ENST00000446014	ENST00000586901		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000304283	ENST00000436648		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000304283	ENST00000321919		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000304283	ENST00000381983		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
Frame-shit	ENST00000304283	ENST00000591451		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
5CDS-5UTR	ENST00000304283	ENST00000586901		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000585773	ENST00000436648		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000585773	ENST00000321919		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000585773	ENST00000381983		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000585773	ENST00000591451		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
5CDS-5UTR	ENST00000585773	ENST00000586901		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000450067	ENST00000436648		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000450067	ENST00000321919		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000450067	ENST00000381983		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000450067	ENST00000591451		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
intron-5UTR	ENST00000450067	ENST00000586901		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000592711	ENST00000436648		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000592711	ENST00000321919		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000592711	ENST00000381983		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
In-frame	ENST00000592711	ENST00000591451		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
5CDS-5UTR	ENST00000592711	ENST00000586901		TCGA	RV	STAD	TCGA-BR-8286-01A	ANKS3	chr16	4774751	-	GLYR1	chr16	4882913	-
intron-3CDS	ENST00000581078	ENST00000337231		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARMC7	chr17	73106701	+	CDR2L	chr17	72995599	+
In-frame	ENST00000582136	ENST00000337231		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARMC7	chr17	73106701	+	CDR2L	chr17	72995599	+
In-frame	ENST00000245543	ENST00000337231		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARMC7	chr17	73106701	+	CDR2L	chr17	72995599	+
In-frame	ENST00000584947	ENST00000337231		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARMC7	chr17	73106701	+	CDR2L	chr17	72995599	+
intron-3CDS	ENST00000579096	ENST00000337231		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARMC7	chr17	73106701	+	CDR2L	chr17	72995599	+
In-frame	ENST00000350721	ENST00000413953		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000350721	ENST00000347140		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000350721	ENST00000358907		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000350721	ENST00000402412		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000350721	ENST00000441731		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000350721	ENST00000403821		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
5CDS-intron	ENST00000350721	ENST00000546843		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000383101	ENST00000413953		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000383101	ENST00000347140		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000383101	ENST00000358907		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000383101	ENST00000402412		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000383101	ENST00000441731		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
In-frame	ENST00000383101	ENST00000403821		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
5CDS-intron	ENST00000383101	ENST00000546843		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	ATR	chr3	142284963	-	R3HDM2	chr12	57650294	-
5CDS-intron	ENST00000312275	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000312275	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000312275	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000312275	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000312275	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000312275	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-intron	ENST00000498159	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-intron	ENST00000498159	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-intron	ENST00000498159	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-intron	ENST00000498159	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-intron	ENST00000498159	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-intron	ENST00000498159	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000468043	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000468043	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000468043	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000468043	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000468043	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000468043	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000459838	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000459838	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000459838	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000459838	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000459838	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000459838	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000461040	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000461040	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000461040	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000461040	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000461040	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000461040	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000449199	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000449199	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000449199	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000449199	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000449199	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000449199	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000426338	ENST00000490337		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000426338	ENST00000389636		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000426338	ENST00000471742		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000426338	ENST00000302490		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000426338	ENST00000389634		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
5CDS-intron	ENST00000426338	ENST00000497291		TCGA	RV	STAD	TCGA-CG-4449-01A	C3orf55	chr3	157271129	+	KCNAB1	chr3	155836000	+
intron-5UTR	ENST00000269881	ENST00000240727		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000269881	ENST00000601144		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000269881	ENST00000421612		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000269881	ENST00000600404		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000269881	ENST00000595944		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000269881	ENST00000594567		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000602234	ENST00000240727		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-5UTR	ENST00000602234	ENST00000601144		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000602234	ENST00000421612		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000602234	ENST00000600404		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000602234	ENST00000595944		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
intron-intron	ENST00000602234	ENST00000594567		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	CALR3	chr19	16738683	-	ZSCAN18	chr19	58601753	-
In-frame	ENST00000264645	ENST00000430627		TCGA	RV	STAD	TCGA-BR-4366-01A	CASC3	chr17	38297860	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000264645	ENST00000447079		TCGA	RV	STAD	TCGA-BR-4366-01A	CASC3	chr17	38297860	+	CDK12	chr17	37686884	+
5CDS-intron	ENST00000264645	ENST00000559545		TCGA	RV	STAD	TCGA-BR-4366-01A	CASC3	chr17	38297860	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000361654	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000361654	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000361654	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000361654	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000545889	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-intron	ENST00000545889	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-intron	ENST00000545889	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000302528	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000302528	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000302528	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000358808	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000358808	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000358808	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000537178	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000537178	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000537178	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
In-frame	ENST00000540338	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000540338	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
5CDS-intron	ENST00000540338	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000536634	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-intron	ENST00000536634	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-intron	ENST00000536634	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000436636		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000538048		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000369326		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000341852		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000284483		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000470834		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000460047		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000475336		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000488470		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-3CDS	ENST00000540539	ENST00000357327		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-intron	ENST00000540539	ENST00000464785		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
intron-intron	ENST00000540539	ENST00000465393		TCGA	RV	STAD	TCGA-BR-4369-01A	CLIP1	chr12	122861936	-	TNIK	chr3	170908576	-
Frame-shit	ENST00000445977	ENST00000541194		TCGA	RV	STAD	TCGA-BR-4357-01A	COPG2	chr7	130337709	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000445977	ENST00000537928		TCGA	RV	STAD	TCGA-BR-4357-01A	COPG2	chr7	130337709	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000445977	ENST00000378555		TCGA	RV	STAD	TCGA-BR-4357-01A	COPG2	chr7	130337709	-	PODXL	chr7	131196192	-
Frame-shit	ENST00000445977	ENST00000322985		TCGA	RV	STAD	TCGA-BR-4357-01A	COPG2	chr7	130337709	-	PODXL	chr7	131196192	-
5CDS-5UTR	ENST00000445977	ENST00000465001		TCGA	RV	STAD	TCGA-BR-4357-01A	COPG2	chr7	130337709	-	PODXL	chr7	131196192	-
In-frame	ENST00000537045	ENST00000215882		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
In-frame	ENST00000537045	ENST00000451283		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
5CDS-5UTR	ENST00000537045	ENST00000461267		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
In-frame	ENST00000263196	ENST00000215882		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
In-frame	ENST00000263196	ENST00000451283		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
5CDS-5UTR	ENST00000263196	ENST00000461267		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
Frame-shit	ENST00000545799	ENST00000215882		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
Frame-shit	ENST00000545799	ENST00000451283		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
5CDS-5UTR	ENST00000545799	ENST00000461267		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
5UTR-3CDS	ENST00000473832	ENST00000215882		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
5UTR-3CDS	ENST00000473832	ENST00000451283		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
5UTR-5UTR	ENST00000473832	ENST00000461267		TCGA	RV	STAD	TCGA-CD-8526-01A	DGCR2	chr22	19050715	-	SLC25A1	chr22	19164463	-
In-frame	ENST00000528176	ENST00000341865		TCGA	RV	STAD	TCGA-BR-8590-01A	EFEMP2	chr11	65637328	-	C6orf132	chr6	42096516	-
In-frame	ENST00000528176	ENST00000356542		TCGA	RV	STAD	TCGA-BR-8590-01A	EFEMP2	chr11	65637328	-	C6orf132	chr6	42096516	-
In-frame	ENST00000307998	ENST00000341865		TCGA	RV	STAD	TCGA-BR-8590-01A	EFEMP2	chr11	65637328	-	C6orf132	chr6	42096516	-
In-frame	ENST00000307998	ENST00000356542		TCGA	RV	STAD	TCGA-BR-8590-01A	EFEMP2	chr11	65637328	-	C6orf132	chr6	42096516	-
intron-3CDS	ENST00000532648	ENST00000341865		TCGA	RV	STAD	TCGA-BR-8590-01A	EFEMP2	chr11	65637328	-	C6orf132	chr6	42096516	-
intron-3CDS	ENST00000532648	ENST00000356542		TCGA	RV	STAD	TCGA-BR-8590-01A	EFEMP2	chr11	65637328	-	C6orf132	chr6	42096516	-
5UTR-3CDS	ENST00000403668	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000403668	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000403668	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000403668	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000403668	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000403668	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000403668	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000444075	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000444075	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000444075	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000444075	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000444075	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000444075	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000444075	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000287701	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000287701	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000287701	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000287701	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000287701	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000287701	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000287701	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000558662	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000558662	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000558662	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000558662	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000558662	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000558662	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000558662	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000523613	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000523613	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000523613	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000523613	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000523613	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000523613	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000523613	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000397358	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000397358	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000397358	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000397358	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000397358	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000397358	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000397358	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000519047	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000519047	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-3CDS	ENST00000519047	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000519047	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000519047	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000519047	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
5UTR-intron	ENST00000519047	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000355231	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000355231	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000355231	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000355231	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000355231	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000355231	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000355231	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000524238	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000524238	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000524238	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000524238	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000524238	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000524238	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000524238	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000517386	ENST00000521015		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000517386	ENST00000256398		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-3CDS	ENST00000517386	ENST00000542181		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000517386	ENST00000523760		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000517386	ENST00000524103		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000517386	ENST00000537665		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
intron-intron	ENST00000517386	ENST00000380353		TCGA	RV	STAD	TCGA-BR-4357-01A	HMBOX1	chr8	28748195	+	ELP3	chr8	27995215	+
Frame-shit	ENST00000263379	ENST00000431365		TCGA	RV	STAD	TCGA-CG-4466-01A	IL27RA	chr19	14160126	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000263379	ENST00000585987		TCGA	RV	STAD	TCGA-CG-4466-01A	IL27RA	chr19	14160126	+	RLN3	chr19	14141522	+
5UTR-3CDS	ENST00000405709	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000405709	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000405709	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-5UTR	ENST00000405709	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-3CDS	ENST00000331762	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000331762	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000331762	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-5UTR	ENST00000331762	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-3CDS	ENST00000452895	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000452895	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000452895	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-5UTR	ENST00000452895	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-3CDS	ENST00000415362	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000415362	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000415362	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-5UTR	ENST00000415362	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-3CDS	ENST00000447215	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000447215	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-intron	ENST00000447215	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
5UTR-5UTR	ENST00000447215	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-3CDS	ENST00000437687	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000437687	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000437687	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-5UTR	ENST00000437687	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-3CDS	ENST00000489381	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000489381	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000489381	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-5UTR	ENST00000489381	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-3CDS	ENST00000450877	ENST00000428084		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000450877	ENST00000494651		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-intron	ENST00000450877	ENST00000437633		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-5UTR	ENST00000450877	ENST00000476846		TCGA	RV	STAD	TCGA-D7-A4YU-01A	IMMP2L	chr7	111201907	-	DOCK4	chr7	111644186	-
intron-5UTR	ENST00000503278	ENST00000320912		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000503278	ENST00000507420		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
intron-5UTR	ENST00000503278	ENST00000382581		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000425103	ENST00000320912		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000425103	ENST00000507420		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000425103	ENST00000382581		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000307659	ENST00000320912		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000307659	ENST00000507420		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
5UTR-5UTR	ENST00000307659	ENST00000382581		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	KIAA0232	chr4	6784568	+	MRFAP1	chr4	6642555	+
In-frame	ENST00000423312	ENST00000286953		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
Frame-shit	ENST00000423312	ENST00000554880		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5CDS-3UTR	ENST00000423312	ENST00000555030		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5CDS-3UTR	ENST00000423312	ENST00000414262		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5CDS-3UTR	ENST00000423312	ENST00000553430		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5CDS-3UTR	ENST00000423312	ENST00000557040		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5CDS-5UTR	ENST00000423312	ENST00000553449		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5CDS-intron	ENST00000423312	ENST00000554713		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-3CDS	ENST00000315264	ENST00000286953		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-3CDS	ENST00000315264	ENST00000554880		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-3UTR	ENST00000315264	ENST00000555030		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-3UTR	ENST00000315264	ENST00000414262		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-3UTR	ENST00000315264	ENST00000553430		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-3UTR	ENST00000315264	ENST00000557040		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-5UTR	ENST00000315264	ENST00000553449		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
5UTR-intron	ENST00000315264	ENST00000554713		TCGA	RV	STAD	TCGA-RD-A8N9-01A	KIF26A	chr14	104605625	+	C14orf2	chr14	104379031	-
In-frame	ENST00000175091	ENST00000338086		TCGA	RV	STAD	TCGA-FP-8631-01A	LAPTM4A	chr2	20251171	-	PUM2	chr2	20527139	-
In-frame	ENST00000175091	ENST00000319801		TCGA	RV	STAD	TCGA-FP-8631-01A	LAPTM4A	chr2	20251171	-	PUM2	chr2	20527139	-
In-frame	ENST00000175091	ENST00000361078		TCGA	RV	STAD	TCGA-FP-8631-01A	LAPTM4A	chr2	20251171	-	PUM2	chr2	20527139	-
5CDS-5UTR	ENST00000175091	ENST00000536417		TCGA	RV	STAD	TCGA-FP-8631-01A	LAPTM4A	chr2	20251171	-	PUM2	chr2	20527139	-
5CDS-5UTR	ENST00000175091	ENST00000403432		TCGA	RV	STAD	TCGA-FP-8631-01A	LAPTM4A	chr2	20251171	-	PUM2	chr2	20527139	-
5CDS-5UTR	ENST00000175091	ENST00000420234		TCGA	RV	STAD	TCGA-FP-8631-01A	LAPTM4A	chr2	20251171	-	PUM2	chr2	20527139	-
intron-5UTR	ENST00000468758	ENST00000407073		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
intron-3UTR	ENST00000468758	ENST00000478804		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
intron-intron	ENST00000468758	ENST00000404807		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
5CDS-5UTR	ENST00000409645	ENST00000407073		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
5CDS-3UTR	ENST00000409645	ENST00000478804		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
5CDS-intron	ENST00000409645	ENST00000404807		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
5CDS-5UTR	ENST00000281923	ENST00000407073		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
5CDS-3UTR	ENST00000281923	ENST00000478804		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
5CDS-intron	ENST00000281923	ENST00000404807		TCGA	RV	STAD	TCGA-CG-4466-01A	MGAT5	chr2	135028121	+	MBD5	chr2	149215772	+
Frame-shit	ENST00000340635	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000340635	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000340635	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000340635	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000360047	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000360047	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000360047	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000360047	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000507116	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000507116	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000507116	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000507116	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000502484	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000502484	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000502484	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000502484	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000546160	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000546160	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000546160	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000546160	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000502575	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000502575	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000502575	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000502575	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-3CDS	ENST00000358923	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-3CDS	ENST00000358923	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-5UTR	ENST00000358923	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-5UTR	ENST00000358923	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000503258	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000503258	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000503258	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000503258	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000405755	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
Frame-shit	ENST00000405755	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000405755	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5CDS-5UTR	ENST00000405755	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-3CDS	ENST00000317118	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-3CDS	ENST00000317118	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-5UTR	ENST00000317118	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
intron-5UTR	ENST00000317118	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5UTR-3CDS	ENST00000503947	ENST00000426742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5UTR-3CDS	ENST00000503947	ENST00000265038		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5UTR-5UTR	ENST00000503947	ENST00000462279		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
5UTR-5UTR	ENST00000503947	ENST00000543101		TCGA	RV	STAD	TCGA-VQ-A92D-01A	PDE4D	chr5	58511603	-	ERCC8	chr5	60170510	-
In-frame	ENST00000433496	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000433496	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000433496	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000433496	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000392481	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000392481	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000392481	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000392481	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
Frame-shit	ENST00000296273	ENST00000231887		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000296273	ENST00000456310		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000296273	ENST00000475987		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
5CDS-5UTR	ENST00000296273	ENST00000440662		TCGA	RV	STAD	TCGA-CG-4306-01A	RFC4	chr3	186510593	-	EHHADH	chr3	184966305	-
intron-5UTR	ENST00000470422	ENST00000483485		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000470422	ENST00000377759		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000470422	ENST00000377768		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000470422	ENST00000606557		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000470422	ENST00000606602		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000470422	ENST00000481323		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000470422	ENST00000486039		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000246043	ENST00000483485		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000246043	ENST00000377759		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000246043	ENST00000377768		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000246043	ENST00000606557		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000246043	ENST00000606602		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000246043	ENST00000481323		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000246043	ENST00000486039		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000377813	ENST00000483485		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000377813	ENST00000377759		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000377813	ENST00000377768		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377813	ENST00000606557		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377813	ENST00000606602		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377813	ENST00000481323		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377813	ENST00000486039		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000377807	ENST00000483485		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000377807	ENST00000377759		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000377807	ENST00000377768		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377807	ENST00000606557		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377807	ENST00000606602		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377807	ENST00000481323		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000377807	ENST00000486039		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000360807	ENST00000483485		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000360807	ENST00000377759		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-5UTR	ENST00000360807	ENST00000377768		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000360807	ENST00000606557		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000360807	ENST00000606602		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000360807	ENST00000481323		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-intron	ENST00000360807	ENST00000486039		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000455029	ENST00000483485		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000455029	ENST00000377759		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-5UTR	ENST00000455029	ENST00000377768		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000455029	ENST00000606557		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000455029	ENST00000606602		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000455029	ENST00000481323		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
5UTR-intron	ENST00000455029	ENST00000486039		TCGA	RV	STAD	TCGA-CG-4443-01A	RRBP1	chr20	17660644	-	SNX5	chr20	17937681	-
intron-3CDS	ENST00000418253	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000418253	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000418253	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000418253	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000418253	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000418253	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000299308	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000299308	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000299308	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000299308	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
Frame-shit	ENST00000299308	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000299308	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000535886	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000535886	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000535886	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000535886	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000535886	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000535886	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8060-01A	TMEM132B	chr12	126068540	+	PPAPDC1A	chr10	122263330	+
5CDS-5UTR	ENST00000409528	ENST00000409599		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-5UTR	ENST00000409528	ENST00000233957		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-intron	ENST00000409528	ENST00000334376		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-5UTR	ENST00000409173	ENST00000409599		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-5UTR	ENST00000409173	ENST00000233957		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-intron	ENST00000409173	ENST00000334376		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-5UTR	ENST00000412401	ENST00000409599		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-5UTR	ENST00000412401	ENST00000233957		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-intron	ENST00000412401	ENST00000334376		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
3UTR-5UTR	ENST00000486293	ENST00000409599		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
3UTR-5UTR	ENST00000486293	ENST00000233957		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
3UTR-intron	ENST00000486293	ENST00000334376		TCGA	RV	STAD	TCGA-VQ-A925-01A	TMEM182	chr2	103380886	+	IL18R1	chr2	102979093	+
5CDS-intron	ENST00000437079	ENST00000559624		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000437079	ENST00000382727		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000437079	ENST00000263791		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000437079	ENST00000560648		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000437079	ENST00000559311		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000287546	ENST00000559624		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000287546	ENST00000382727		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000287546	ENST00000263791		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000287546	ENST00000560648		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000287546	ENST00000559311		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000436792	ENST00000559624		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000436792	ENST00000382727		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000436792	ENST00000263791		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000436792	ENST00000560648		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000436792	ENST00000559311		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000446204	ENST00000559624		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000446204	ENST00000382727		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000446204	ENST00000263791		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000446204	ENST00000560648		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
5CDS-intron	ENST00000446204	ENST00000559311		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000424463	ENST00000559624		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000424463	ENST00000382727		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000424463	ENST00000263791		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000424463	ENST00000560648		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000424463	ENST00000559311		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000463687	ENST00000559624		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000463687	ENST00000382727		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000463687	ENST00000263791		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000463687	ENST00000560648		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
intron-intron	ENST00000463687	ENST00000559311		TCGA	RV	STAD	TCGA-CG-4449-01A	VPS8	chr3	184588593	+	EIF2AK4	chr15	40318178	+
In-frame	ENST00000368315	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000368315	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368315	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368315	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368315	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000313695	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000313695	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000313695	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000313695	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000313695	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000361247	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000361247	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000361247	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000361247	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000361247	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
Frame-shit	ENST00000368316	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
Frame-shit	ENST00000368316	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368316	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368316	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000368316	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
Frame-shit	ENST00000462460	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
Frame-shit	ENST00000462460	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000462460	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000462460	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000462460	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
intron-3CDS	ENST00000477754	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
intron-3CDS	ENST00000477754	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
intron-5UTR	ENST00000477754	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
intron-5UTR	ENST00000477754	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
intron-5UTR	ENST00000477754	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000313667	ENST00000295688		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000313667	ENST00000368259		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000313667	ENST00000368261		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000313667	ENST00000472765		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
5CDS-5UTR	ENST00000313667	ENST00000368256		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	ARHGEF2	chr1	155924693	-	CCT3	chr1	156305679	-
In-frame	ENST00000307404	ENST00000349769		TCGA	RV	STAD	TCGA-BR-8373-01A	BOP1	chr8	145500212	-	CPSF1	chr8	145620570	-
5CDS-intron	ENST00000307404	ENST00000531727		TCGA	RV	STAD	TCGA-BR-8373-01A	BOP1	chr8	145500212	-	CPSF1	chr8	145620570	-
Frame-shit	ENST00000529231	ENST00000349769		TCGA	RV	STAD	TCGA-BR-8373-01A	BOP1	chr8	145500212	-	CPSF1	chr8	145620570	-
5CDS-intron	ENST00000529231	ENST00000531727		TCGA	RV	STAD	TCGA-BR-8373-01A	BOP1	chr8	145500212	-	CPSF1	chr8	145620570	-
intron-3CDS	ENST00000525016	ENST00000349769		TCGA	RV	STAD	TCGA-BR-8373-01A	BOP1	chr8	145500212	-	CPSF1	chr8	145620570	-
intron-intron	ENST00000525016	ENST00000531727		TCGA	RV	STAD	TCGA-BR-8373-01A	BOP1	chr8	145500212	-	CPSF1	chr8	145620570	-
Frame-shit	ENST00000349699	ENST00000269033		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000349699	ENST00000540801		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000349699	ENST00000324677		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000349699	ENST00000582084		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000349699	ENST00000590153		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000349699	ENST00000579954		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000394367	ENST00000269033		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000394367	ENST00000540801		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-5UTR	ENST00000394367	ENST00000324677		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394367	ENST00000582084		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394367	ENST00000590153		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
5CDS-intron	ENST00000394367	ENST00000579954		TCGA	RV	STAD	TCGA-VQ-A94U-01A	DDX52	chr17	35984390	-	SSH2	chr17	28030080	-
Frame-shit	ENST00000309156	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000309156	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000309156	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
3UTR-3CDS	ENST00000309185	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
3UTR-3CDS	ENST00000309185	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
3UTR-intron	ENST00000309185	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000394211	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000394211	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000394211	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
intron-3CDS	ENST00000578702	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
intron-3CDS	ENST00000578702	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
intron-intron	ENST00000578702	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000445327	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000445327	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000445327	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000394209	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000394209	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
5CDS-intron	ENST00000394209	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
3UTR-3CDS	ENST00000394204	ENST00000430627		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
3UTR-3CDS	ENST00000394204	ENST00000447079		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
3UTR-intron	ENST00000394204	ENST00000559545		TCGA	RV	STAD	TCGA-CG-4449-01A	GRB7	chr17	37902455	+	CDK12	chr17	37680927	+
Frame-shit	ENST00000355029	ENST00000380419		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
Frame-shit	ENST00000355029	ENST00000479328		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
intron-3CDS	ENST00000542715	ENST00000380419		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
intron-3CDS	ENST00000542715	ENST00000479328		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
intron-3CDS	ENST00000380359	ENST00000380419		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
intron-3CDS	ENST00000380359	ENST00000479328		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
intron-3CDS	ENST00000484741	ENST00000380419		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
intron-3CDS	ENST00000484741	ENST00000479328		TCGA	RV	STAD	TCGA-BR-8059-01A	NET1	chr10	5454783	+	TUBAL3	chr10	5437438	-
Frame-shit	ENST00000358994	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000358994	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000358994	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000393370	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000393370	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000393370	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000337738	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000337738	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000337738	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000348141	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000348141	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000348141	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000452489	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000452489	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000452489	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000357197	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000357197	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000357197	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000347048	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000347048	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000347048	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
Frame-shit	ENST00000355007	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000355007	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-intron	ENST00000355007	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000423100	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000423100	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000423100	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000524946	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000524946	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000524946	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000436883	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000436883	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000436883	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000414510	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000414510	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000414510	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000432124	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000432124	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000432124	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000435305	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000435305	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000435305	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000419582	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000419582	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000419582	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000432651	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000432651	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000432651	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000435132	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000435132	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000435132	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-3CDS	ENST00000434095	ENST00000318080		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000434095	ENST00000464290		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
intron-intron	ENST00000434095	ENST00000393384		TCGA	RV	STAD	TCGA-BR-8080-01A	PPP2R4	chr9	131873910	+	CRAT	chr9	131866585	-
5CDS-3UTR	ENST00000341307	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000341307	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000356000	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000356000	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
3UTR-3UTR	ENST00000538995	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
3UTR-3UTR	ENST00000538995	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000377819	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000377819	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000339997	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000339997	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000540798	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000540798	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000537981	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000537981	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000354497	ENST00000310969		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
5CDS-3UTR	ENST00000354497	ENST00000279178		TCGA	RV	STAD	TCGA-BR-8373-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63173969	+
Frame-shit	ENST00000222345	ENST00000600603		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
Frame-shit	ENST00000222345	ENST00000601638		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
Frame-shit	ENST00000222345	ENST00000221557		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000222345	ENST00000598325		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000222345	ENST00000391842		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000222345	ENST00000599732		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000222345	ENST00000601675		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3CDS	ENST00000476317	ENST00000600603		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3CDS	ENST00000476317	ENST00000601638		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3CDS	ENST00000476317	ENST00000221557		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3UTR	ENST00000476317	ENST00000598325		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3UTR	ENST00000476317	ENST00000391842		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3UTR	ENST00000476317	ENST00000599732		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
intron-3UTR	ENST00000476317	ENST00000601675		TCGA	RV	STAD	TCGA-CG-4443-01A	SIPA1L3	chr19	38633350	+	PTOV1	chr19	50357663	+
In-frame	ENST00000358026	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000358026	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000344626	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000344626	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000429416	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000429416	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000541122	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000541122	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000589677	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000589677	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000444061	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000444061	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000590574	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000590574	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000413806	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000413806	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
In-frame	ENST00000450717	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
Frame-shit	ENST00000450717	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
intron-3CDS	ENST00000538456	ENST00000592854		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
intron-3CDS	ENST00000538456	ENST00000397820		TCGA	RV	STAD	TCGA-BR-4357-01A	SMARCA4	chr19	11098600	+	C19orf38	chr19	10979894	+
intron-intron	ENST00000476901	ENST00000381061		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
intron-intron	ENST00000476901	ENST00000252934		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
intron-3UTR	ENST00000476901	ENST00000498009		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
intron-intron	ENST00000476901	ENST00000402380		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000290846	ENST00000381061		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000290846	ENST00000252934		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-3UTR	ENST00000290846	ENST00000498009		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000290846	ENST00000402380		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000381019	ENST00000381061		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000381019	ENST00000252934		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-3UTR	ENST00000381019	ENST00000498009		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000381019	ENST00000402380		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000424260	ENST00000381061		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000424260	ENST00000252934		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-3UTR	ENST00000424260	ENST00000498009		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000424260	ENST00000402380		TCGA	RV	STAD	TCGA-RD-A8MW-01A	TRMU	chr22	46739265	+	ATXN10	chr22	46085592	+
5CDS-intron	ENST00000261381	ENST00000219771		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	QPRT	chr16	29705985	+
5CDS-intron	ENST00000261381	ENST00000395384		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	QPRT	chr16	29705985	+
5CDS-intron	ENST00000261381	ENST00000562473		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	QPRT	chr16	29705985	+
intron-intron	ENST00000568226	ENST00000219771		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	QPRT	chr16	29705985	+
intron-intron	ENST00000568226	ENST00000395384		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	QPRT	chr16	29705985	+
intron-intron	ENST00000568226	ENST00000562473		TCGA	RV	STAD	TCGA-BR-A4QI-01A	XYLT1	chr16	17352845	-	QPRT	chr16	29705985	+
In-frame	ENST00000311956	ENST00000529230		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGAP1	chr11	46709723	-	CKAP5	chr11	46792532	-
In-frame	ENST00000311956	ENST00000415402		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGAP1	chr11	46709723	-	CKAP5	chr11	46792532	-
In-frame	ENST00000311956	ENST00000312055		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGAP1	chr11	46709723	-	CKAP5	chr11	46792532	-
In-frame	ENST00000311956	ENST00000354558		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGAP1	chr11	46709723	-	CKAP5	chr11	46792532	-
5CDS-intron	ENST00000311956	ENST00000532321		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGAP1	chr11	46709723	-	CKAP5	chr11	46792532	-
In-frame	ENST00000538010	ENST00000257552		TCGA	RV	STAD	TCGA-CG-4444-01A	BCL7A	chr12	122473333	+	MSI1	chr12	120791182	-
5CDS-5UTR	ENST00000538010	ENST00000546622		TCGA	RV	STAD	TCGA-CG-4444-01A	BCL7A	chr12	122473333	+	MSI1	chr12	120791182	-
In-frame	ENST00000261822	ENST00000257552		TCGA	RV	STAD	TCGA-CG-4444-01A	BCL7A	chr12	122473333	+	MSI1	chr12	120791182	-
5CDS-5UTR	ENST00000261822	ENST00000546622		TCGA	RV	STAD	TCGA-CG-4444-01A	BCL7A	chr12	122473333	+	MSI1	chr12	120791182	-
5CDS-3UTR	ENST00000381573	ENST00000377694		TCGA	RV	STAD	TCGA-CG-4477-01A	CD274	chr9	5465606	+	IGFBPL1	chr9	38409214	-
5CDS-3UTR	ENST00000381577	ENST00000377694		TCGA	RV	STAD	TCGA-CG-4477-01A	CD274	chr9	5465606	+	IGFBPL1	chr9	38409214	-
intron-3UTR	ENST00000498261	ENST00000377694		TCGA	RV	STAD	TCGA-CG-4477-01A	CD274	chr9	5465606	+	IGFBPL1	chr9	38409214	-
Frame-shit	ENST00000381527	ENST00000340473		TCGA	RV	STAD	TCGA-D7-8576-01A	CDK8	chr13	26911779	+	GTF2F2	chr13	45857577	+
5CDS-intron	ENST00000381527	ENST00000494087		TCGA	RV	STAD	TCGA-D7-8576-01A	CDK8	chr13	26911779	+	GTF2F2	chr13	45857577	+
Frame-shit	ENST00000536792	ENST00000340473		TCGA	RV	STAD	TCGA-D7-8576-01A	CDK8	chr13	26911779	+	GTF2F2	chr13	45857577	+
5CDS-intron	ENST00000536792	ENST00000494087		TCGA	RV	STAD	TCGA-D7-8576-01A	CDK8	chr13	26911779	+	GTF2F2	chr13	45857577	+
intron-3CDS	ENST00000480323	ENST00000340473		TCGA	RV	STAD	TCGA-D7-8576-01A	CDK8	chr13	26911779	+	GTF2F2	chr13	45857577	+
intron-intron	ENST00000480323	ENST00000494087		TCGA	RV	STAD	TCGA-D7-8576-01A	CDK8	chr13	26911779	+	GTF2F2	chr13	45857577	+
5UTR-3CDS	ENST00000393893	ENST00000393877		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000393893	ENST00000308022		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000393893	ENST00000541059		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000393893	ENST00000452789		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000341356	ENST00000393877		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000341356	ENST00000308022		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000341356	ENST00000541059		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000341356	ENST00000452789		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
intron-3CDS	ENST00000539724	ENST00000393877		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
intron-3CDS	ENST00000539724	ENST00000308022		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
intron-intron	ENST00000539724	ENST00000541059		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
intron-intron	ENST00000539724	ENST00000452789		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000453768	ENST00000393877		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000453768	ENST00000308022		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000453768	ENST00000541059		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000453768	ENST00000452789		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000545016	ENST00000393877		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000545016	ENST00000308022		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000545016	ENST00000541059		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-intron	ENST00000545016	ENST00000452789		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	CORO1B	chr11	67210875	-	TMEM134	chr11	67235563	-
5UTR-3CDS	ENST00000202028	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000202028	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000202028	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000202028	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000202028	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000373950	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000373950	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000373950	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000373950	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000373950	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000441639	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000441639	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000441639	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000441639	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5UTR-3CDS	ENST00000441639	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373946	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373946	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373946	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373946	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373946	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000338074	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000338074	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000338074	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000338074	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000338074	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373941	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373941	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373941	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373941	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000373941	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000479336	ENST00000373803		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000479336	ENST00000359675		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000479336	ENST00000349004		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000479336	ENST00000373773		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
intron-3CDS	ENST00000479336	ENST00000540765		TCGA	RV	STAD	TCGA-CG-4304-01A	EPB41L1	chr20	34700402	+	NDRG3	chr20	35282104	-
5CDS-5UTR	ENST00000300030	ENST00000303052		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000300030	ENST00000607537		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000300030	ENST00000303032		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
intron-5UTR	ENST00000558779	ENST00000303052		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
intron-5UTR	ENST00000558779	ENST00000607537		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
intron-5UTR	ENST00000558779	ENST00000303032		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000380290	ENST00000303052		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000380290	ENST00000607537		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000380290	ENST00000303032		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000557835	ENST00000303052		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000557835	ENST00000607537		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000557835	ENST00000303032		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000559950	ENST00000303052		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000559950	ENST00000607537		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
5CDS-5UTR	ENST00000559950	ENST00000303032		TCGA	RV	STAD	TCGA-HU-A4HD-01A	FAM96A	chr15	64380886	-	CSNK1G1	chr15	64592922	-
intron-3CDS	ENST00000372572	ENST00000264211		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000372572	ENST00000400422		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000372572	ENST00000602326		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000374935		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000374937		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-5UTR	ENST00000372572	ENST00000536266		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000374933		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000544689		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000356916		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000374927		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372572	ENST00000537738		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-3CDS	ENST00000372573	ENST00000264211		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-3CDS	ENST00000372573	ENST00000400422		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-3CDS	ENST00000372573	ENST00000602326		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000374935		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000374937		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-5UTR	ENST00000372573	ENST00000536266		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000374933		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000544689		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000356916		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000374927		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-intron	ENST00000372573	ENST00000537738		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000361346	ENST00000264211		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000361346	ENST00000400422		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000361346	ENST00000602326		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000374935		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000374937		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-5UTR	ENST00000361346	ENST00000536266		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000374933		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000544689		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000356916		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000374927		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361346	ENST00000537738		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000361776	ENST00000264211		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000361776	ENST00000400422		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000361776	ENST00000602326		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000374935		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000374937		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-5UTR	ENST00000361776	ENST00000536266		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000374933		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000544689		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000356916		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000374927		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000361776	ENST00000537738		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000545068	ENST00000264211		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000545068	ENST00000400422		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000545068	ENST00000602326		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000374935		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000374937		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-5UTR	ENST00000545068	ENST00000536266		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000374933		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000544689		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000356916		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000374927		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000545068	ENST00000537738		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000372571	ENST00000264211		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000372571	ENST00000400422		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-3CDS	ENST00000372571	ENST00000602326		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000374935		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000374937		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-5UTR	ENST00000372571	ENST00000536266		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000374933		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000544689		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000356916		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000374927		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
intron-intron	ENST00000372571	ENST00000537738		TCGA	RV	STAD	TCGA-BR-8058-01A	FOXJ3	chr1	42801297	-	EIF4G3	chr1	21268823	-
5UTR-3CDS	ENST00000299293	ENST00000433360		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000299293	ENST00000340694		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000299293	ENST00000424654		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000299293	ENST00000433881		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000299293	ENST00000289495		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000299293	ENST00000456331		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-3CDS	ENST00000549921	ENST00000433360		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000549921	ENST00000340694		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000549921	ENST00000424654		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000549921	ENST00000433881		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000549921	ENST00000289495		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000549921	ENST00000456331		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-3CDS	ENST00000550389	ENST00000433360		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000550389	ENST00000340694		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000550389	ENST00000424654		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000550389	ENST00000433881		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000550389	ENST00000289495		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
5UTR-intron	ENST00000550389	ENST00000456331		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
intron-3CDS	ENST00000397997	ENST00000433360		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
intron-intron	ENST00000397997	ENST00000340694		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
intron-intron	ENST00000397997	ENST00000424654		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
intron-intron	ENST00000397997	ENST00000433881		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
intron-intron	ENST00000397997	ENST00000289495		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
intron-intron	ENST00000397997	ENST00000456331		TCGA	RV	STAD	TCGA-CG-4475-01A	FRS2	chr12	69864310	+	PPP1R9A	chr7	94903211	+
In-frame	ENST00000329138	ENST00000392411		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-intron	ENST00000329138	ENST00000321280		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-intron	ENST00000329138	ENST00000428708		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-intron	ENST00000329138	ENST00000575712		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-3UTR	ENST00000329138	ENST00000575245		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-3UTR	ENST00000329138	ENST00000435091		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-3UTR	ENST00000329138	ENST00000321300		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-intron	ENST00000329138	ENST00000573894		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
5CDS-intron	ENST00000329138	ENST00000416299		TCGA	RV	STAD	TCGA-BR-4357-01A	HGS	chr17	79658601	+	BAIAP2	chr17	79089570	+
In-frame	ENST00000600059	ENST00000222122		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
In-frame	ENST00000600059	ENST00000599385		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
Frame-shit	ENST00000600059	ENST00000593500		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000600059	ENST00000601104		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
In-frame	ENST00000270238	ENST00000222122		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
In-frame	ENST00000270238	ENST00000599385		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
Frame-shit	ENST00000270238	ENST00000593500		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
5CDS-intron	ENST00000270238	ENST00000601104		TCGA	RV	STAD	TCGA-CD-8527-01A	LMTK3	chr19	48994365	-	DBP	chr19	49134309	-
intron-3CDS	ENST00000458477	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000458477	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
In-frame	ENST00000228307	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
In-frame	ENST00000228307	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
In-frame	ENST00000424649	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
In-frame	ENST00000424649	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000397506	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000397506	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000536957	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000536957	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
In-frame	ENST00000267257	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
In-frame	ENST00000267257	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000538144	ENST00000288532		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
intron-3CDS	ENST00000538144	ENST00000445328		TCGA	RV	STAD	TCGA-CD-A4MH-01A	PXN	chr12	120703420	-	COQ5	chr12	120942786	-
Frame-shit	ENST00000367669	ENST00000294818		TCGA	RV	STAD	TCGA-HU-A4H5-01A	RFWD2	chr1	176132005	-	LRRC52	chr1	165532742	+
Frame-shit	ENST00000308769	ENST00000294818		TCGA	RV	STAD	TCGA-HU-A4H5-01A	RFWD2	chr1	176132005	-	LRRC52	chr1	165532742	+
5UTR-intron	ENST00000264485	ENST00000202028		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000264485	ENST00000373950		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000264485	ENST00000441639		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000264485	ENST00000373946		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-5UTR	ENST00000264485	ENST00000338074		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-5UTR	ENST00000264485	ENST00000373941		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000264485	ENST00000479336		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000425175	ENST00000202028		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000425175	ENST00000373950		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000425175	ENST00000441639		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000425175	ENST00000373946		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-5UTR	ENST00000425175	ENST00000338074		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-5UTR	ENST00000425175	ENST00000373941		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000425175	ENST00000479336		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000351898	ENST00000202028		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000351898	ENST00000373950		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000351898	ENST00000441639		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000351898	ENST00000373946		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-5UTR	ENST00000351898	ENST00000338074		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-5UTR	ENST00000351898	ENST00000373941		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
5UTR-intron	ENST00000351898	ENST00000479336		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000340595	ENST00000202028		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000340595	ENST00000373950		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000340595	ENST00000441639		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000340595	ENST00000373946		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000340595	ENST00000338074		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000340595	ENST00000373941		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000340595	ENST00000479336		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000514331	ENST00000202028		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000514331	ENST00000373950		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000514331	ENST00000441639		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000514331	ENST00000373946		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000514331	ENST00000338074		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000514331	ENST00000373941		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000514331	ENST00000479336		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000512686	ENST00000202028		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000512686	ENST00000373950		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000512686	ENST00000441639		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000512686	ENST00000373946		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000512686	ENST00000338074		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-5UTR	ENST00000512686	ENST00000373941		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
intron-intron	ENST00000512686	ENST00000479336		TCGA	RV	STAD	TCGA-KB-A93J-01A	SLC4A4	chr4	72053118	+	EPB41L1	chr20	34761686	+
In-frame	ENST00000369005	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000369005	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000369005	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000513429	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000513429	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515273	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000515273	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000515603	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000515603	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000453444	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000453444	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000358010	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000358010	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000334433	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
5CDS-intron	ENST00000334433	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369001	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000369001	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369000	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000369000	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000360561	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000360561	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000368999	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000368999	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000369004	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000369004	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-3CDS	ENST00000260733	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
intron-intron	ENST00000260733	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000398250		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000439221		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000398248		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000541332		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-3CDS	ENST00000493951	ENST00000369073		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
3UTR-intron	ENST00000493951	ENST00000496437		TCGA	RV	STAD	TCGA-BR-8590-01A	TACC2	chr10	123903221	+	PPAPDC1A	chr10	122263330	+
In-frame	ENST00000337137	ENST00000454366		TCGA	RV	STAD	TCGA-BR-4366-01A	TBC1D22A	chr22	47158745	+	GTSE1	chr22	46722333	+
5UTR-3CDS	ENST00000380995	ENST00000454366		TCGA	RV	STAD	TCGA-BR-4366-01A	TBC1D22A	chr22	47158745	+	GTSE1	chr22	46722333	+
In-frame	ENST00000407381	ENST00000454366		TCGA	RV	STAD	TCGA-BR-4366-01A	TBC1D22A	chr22	47158745	+	GTSE1	chr22	46722333	+
In-frame	ENST00000355704	ENST00000454366		TCGA	RV	STAD	TCGA-BR-4366-01A	TBC1D22A	chr22	47158745	+	GTSE1	chr22	46722333	+
intron-3CDS	ENST00000472791	ENST00000454366		TCGA	RV	STAD	TCGA-BR-4366-01A	TBC1D22A	chr22	47158745	+	GTSE1	chr22	46722333	+
intron-3CDS	ENST00000406733	ENST00000454366		TCGA	RV	STAD	TCGA-BR-4366-01A	TBC1D22A	chr22	47158745	+	GTSE1	chr22	46722333	+
Frame-shit	ENST00000395996	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000395996	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000395996	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
5CDS-intron	ENST00000395996	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000358544	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000358544	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000358544	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
5CDS-intron	ENST00000358544	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000357162	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000357162	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000357162	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
5CDS-intron	ENST00000357162	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000355155	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000355155	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
Frame-shit	ENST00000355155	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
5CDS-intron	ENST00000355155	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
intron-3CDS	ENST00000441350	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
intron-3CDS	ENST00000441350	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
intron-3CDS	ENST00000441350	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
intron-intron	ENST00000441350	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
3UTR-3CDS	ENST00000521932	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
3UTR-3CDS	ENST00000521932	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
3UTR-3CDS	ENST00000521932	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
3UTR-intron	ENST00000521932	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	VPS13B	chr8	100205285	+	RGS22	chr8	100994344	-
5UTR-5UTR	ENST00000396029	ENST00000371571		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
5UTR-intron	ENST00000396029	ENST00000506387		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
5UTR-5UTR	ENST00000396029	ENST00000396017		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
5UTR-5UTR	ENST00000396032	ENST00000371571		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
5UTR-intron	ENST00000396032	ENST00000506387		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
5UTR-5UTR	ENST00000396032	ENST00000396017		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
intron-5UTR	ENST00000371602	ENST00000371571		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
intron-intron	ENST00000371602	ENST00000506387		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
intron-5UTR	ENST00000371602	ENST00000396017		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
intron-5UTR	ENST00000349014	ENST00000371571		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
intron-intron	ENST00000349014	ENST00000506387		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
intron-5UTR	ENST00000349014	ENST00000396017		TCGA	RV	STAD	TCGA-BR-8060-01A	ADNP	chr20	49547363	-	KCNG1	chr20	49626901	-
5CDS-intron	ENST00000309311	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000309311	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000309311	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000600720	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000600720	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000600720	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	EEF2	chr19	3976055	-	EIF2AK2	chr2	37342384	-
In-frame	ENST00000396153	ENST00000371730		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
In-frame	ENST00000396153	ENST00000371733		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000396153	ENST00000396122		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000396153	ENST00000493793		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
Frame-shit	ENST00000371778	ENST00000371730		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
Frame-shit	ENST00000371778	ENST00000371733		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000371778	ENST00000396122		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
5CDS-intron	ENST00000371778	ENST00000493793		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000545823	ENST00000371730		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000545823	ENST00000371733		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-intron	ENST00000545823	ENST00000396122		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-intron	ENST00000545823	ENST00000493793		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000472808	ENST00000371730		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-3CDS	ENST00000472808	ENST00000371733		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-intron	ENST00000472808	ENST00000396122		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
intron-intron	ENST00000472808	ENST00000493793		TCGA	RV	STAD	TCGA-BR-A4QI-01A	FAF1	chr1	51323601	-	EPS15	chr1	51946986	-
3UTR-3CDS	ENST00000483933	ENST00000427718		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	FUT9	chr6	96464088	+	FBXO21	chr12	117627167	-
3UTR-3CDS	ENST00000483933	ENST00000330622		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	FUT9	chr6	96464088	+	FBXO21	chr12	117627167	-
3UTR-intron	ENST00000483933	ENST00000549689		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	FUT9	chr6	96464088	+	FBXO21	chr12	117627167	-
5UTR-3CDS	ENST00000302103	ENST00000427718		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	FUT9	chr6	96464088	+	FBXO21	chr12	117627167	-
5UTR-3CDS	ENST00000302103	ENST00000330622		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	FUT9	chr6	96464088	+	FBXO21	chr12	117627167	-
5UTR-intron	ENST00000302103	ENST00000549689		TCGA	RV	STAD	TCGA-VQ-A8PQ-01A	FUT9	chr6	96464088	+	FBXO21	chr12	117627167	-
Frame-shit	ENST00000080059	ENST00000380518		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5CDS-intron	ENST00000080059	ENST00000493991		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5CDS-intron	ENST00000080059	ENST00000337299		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
Frame-shit	ENST00000354334	ENST00000380518		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5CDS-intron	ENST00000354334	ENST00000493991		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5CDS-intron	ENST00000354334	ENST00000337299		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
Frame-shit	ENST00000552960	ENST00000380518		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5CDS-intron	ENST00000552960	ENST00000493991		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5CDS-intron	ENST00000552960	ENST00000337299		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-3CDS	ENST00000380610	ENST00000380518		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-intron	ENST00000380610	ENST00000493991		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-intron	ENST00000380610	ENST00000337299		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-3CDS	ENST00000427332	ENST00000380518		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-intron	ENST00000427332	ENST00000493991		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-intron	ENST00000427332	ENST00000337299		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-3CDS	ENST00000488927	ENST00000380518		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-intron	ENST00000488927	ENST00000493991		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
intron-intron	ENST00000488927	ENST00000337299		TCGA	RV	STAD	TCGA-VQ-A8PJ-01A	HDAC7	chr12	48213550	-	COL2A1	chr12	48393908	-
5UTR-5UTR	ENST00000355630	ENST00000491545		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000435456		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000402844		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000544408		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000355630	ENST00000542412		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000491545		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000435456		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000402844		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000544408		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000396617	ENST00000542412		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000491545		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000435456		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000402844		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000544408		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000402042	ENST00000542412		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000491545		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000435456		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000402844		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000544408		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
5UTR-5UTR	ENST00000466278	ENST00000542412		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000491545		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000435456		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000402844		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000544408		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000407029	ENST00000542412		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000491545		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000435456		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000402844		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000544408		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000402630	ENST00000542412		TCGA	RV	STAD	TCGA-B7-A5TN-01A	MKL1	chr22	40948110	-	SLC25A17	chr22	41175129	-
In-frame	ENST00000356175	ENST00000357308		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
In-frame	ENST00000356175	ENST00000361060		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
5CDS-intron	ENST00000356175	ENST00000494201		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
In-frame	ENST00000358273	ENST00000357308		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
In-frame	ENST00000358273	ENST00000361060		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
5CDS-intron	ENST00000358273	ENST00000494201		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000431387	ENST00000357308		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000431387	ENST00000361060		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-intron	ENST00000431387	ENST00000494201		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000581113	ENST00000357308		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000581113	ENST00000361060		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-intron	ENST00000581113	ENST00000494201		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000417592	ENST00000357308		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000417592	ENST00000361060		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-intron	ENST00000417592	ENST00000494201		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000444181	ENST00000357308		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-3CDS	ENST00000444181	ENST00000361060		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
intron-intron	ENST00000444181	ENST00000494201		TCGA	RV	STAD	TCGA-CG-4477-01A	NF1	chr17	29664600	+	GFPT1	chr2	69556930	-
Frame-shit	ENST00000320580	ENST00000589852		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
In-frame	ENST00000320580	ENST00000263384		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
In-frame	ENST00000320580	ENST00000588367		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
intron-3CDS	ENST00000529757	ENST00000589852		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
intron-3CDS	ENST00000529757	ENST00000263384		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
intron-3CDS	ENST00000529757	ENST00000588367		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
intron-3CDS	ENST00000524815	ENST00000589852		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
intron-3CDS	ENST00000524815	ENST00000263384		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
intron-3CDS	ENST00000524815	ENST00000588367		TCGA	RV	STAD	TCGA-BR-8590-01A	PACS1	chr11	65838313	+	FAM32A	chr19	16296435	+
5CDS-5UTR	ENST00000216446	ENST00000357461		TCGA	RV	STAD	TCGA-BR-7901-01A	PLEK2	chr14	67878735	-	TMEM229B	chr14	67940658	-
5CDS-5UTR	ENST00000216446	ENST00000557006		TCGA	RV	STAD	TCGA-BR-7901-01A	PLEK2	chr14	67878735	-	TMEM229B	chr14	67940658	-
5UTR-5UTR	ENST00000557388	ENST00000357461		TCGA	RV	STAD	TCGA-BR-7901-01A	PLEK2	chr14	67878735	-	TMEM229B	chr14	67940658	-
5UTR-5UTR	ENST00000557388	ENST00000557006		TCGA	RV	STAD	TCGA-BR-7901-01A	PLEK2	chr14	67878735	-	TMEM229B	chr14	67940658	-
5CDS-intron	ENST00000535781	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	PRPF6	chr20	62664449	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000535781	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	PRPF6	chr20	62664449	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000535781	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	PRPF6	chr20	62664449	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000535781	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	PRPF6	chr20	62664449	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000535781	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	PRPF6	chr20	62664449	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000535781	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	PRPF6	chr20	62664449	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000529163	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8591-01A	RPL8	chr8	146015155	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000394920	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8591-01A	RPL8	chr8	146015155	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000527914	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8591-01A	RPL8	chr8	146015155	-	DDX21	chr10	70723858	+
5CDS-intron	ENST00000262584	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8591-01A	RPL8	chr8	146015155	-	DDX21	chr10	70723858	+
intron-intron	ENST00000528957	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8591-01A	RPL8	chr8	146015155	-	DDX21	chr10	70723858	+
5CDS-5UTR	ENST00000379565	ENST00000357607		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
5CDS-5UTR	ENST00000379565	ENST00000348343		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
5CDS-intron	ENST00000379565	ENST00000463891		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
5CDS-5UTR	ENST00000379565	ENST00000342014		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000544447	ENST00000357607		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000544447	ENST00000348343		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-intron	ENST00000544447	ENST00000463891		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000544447	ENST00000342014		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000379548	ENST00000357607		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000379548	ENST00000348343		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-intron	ENST00000379548	ENST00000463891		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000379548	ENST00000342014		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000540702	ENST00000357607		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000540702	ENST00000348343		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-intron	ENST00000540702	ENST00000463891		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000540702	ENST00000342014		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000479809	ENST00000357607		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000479809	ENST00000348343		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-intron	ENST00000479809	ENST00000463891		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
intron-5UTR	ENST00000479809	ENST00000342014		TCGA	RV	STAD	TCGA-CD-8527-01A	RPS6KA3	chrX	20284682	-	BMX	chrX	15526468	+
Frame-shit	ENST00000392476	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000392476	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000392476	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000392476	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000392476	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000430767	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000430767	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000430767	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000430767	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000430767	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-3CDS	ENST00000564509	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-3CDS	ENST00000564509	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000564509	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000564509	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000564509	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000585618	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000585618	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000585618	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000585618	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000585618	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000413679	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000413679	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000413679	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000413679	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000413679	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000436233	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000436233	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000436233	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000436233	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000436233	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000443798	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
Frame-shit	ENST00000443798	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000443798	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000443798	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
5CDS-intron	ENST00000443798	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-3CDS	ENST00000591437	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-3CDS	ENST00000591437	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000591437	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000591437	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000591437	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-3CDS	ENST00000431431	ENST00000569840		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-3CDS	ENST00000431431	ENST00000301618		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000431431	ENST00000565675		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000431431	ENST00000374998		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
intron-intron	ENST00000431431	ENST00000428789		TCGA	RV	STAD	TCGA-CG-4449-01A	SEC14L1	chr17	75139741	+	MGAT5B	chr17	74921048	+
In-frame	ENST00000305513	ENST00000254722		TCGA	RV	STAD	TCGA-CG-4462-01A	SMYD4	chr17	1715265	-	SERPINF1	chr17	1673146	+
5CDS-3UTR	ENST00000305513	ENST00000571870		TCGA	RV	STAD	TCGA-CG-4462-01A	SMYD4	chr17	1715265	-	SERPINF1	chr17	1673146	+
In-frame	ENST00000397517	ENST00000376460		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000397517	ENST00000339416		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000397517	ENST00000448493		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000397517	ENST00000442173		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5CDS-intron	ENST00000397517	ENST00000461998		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000539966	ENST00000376460		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000539966	ENST00000339416		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000539966	ENST00000448493		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000539966	ENST00000442173		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5CDS-intron	ENST00000539966	ENST00000461998		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5UTR-3CDS	ENST00000481288	ENST00000376460		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5UTR-3CDS	ENST00000481288	ENST00000339416		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5UTR-3CDS	ENST00000481288	ENST00000448493		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5UTR-3CDS	ENST00000481288	ENST00000442173		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5UTR-intron	ENST00000481288	ENST00000461998		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000376547	ENST00000376460		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000376547	ENST00000339416		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000376547	ENST00000448493		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
In-frame	ENST00000376547	ENST00000442173		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
5CDS-intron	ENST00000376547	ENST00000461998		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	STK24	chr13	99171497	-	DOCK9	chr13	99532926	-
Frame-shit	ENST00000397517	ENST00000376503		TCGA	RV	STAD	TCGA-VQ-A928-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
Frame-shit	ENST00000539966	ENST00000376503		TCGA	RV	STAD	TCGA-VQ-A928-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
intron-3CDS	ENST00000481288	ENST00000376503		TCGA	RV	STAD	TCGA-VQ-A928-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
intron-3CDS	ENST00000376547	ENST00000376503		TCGA	RV	STAD	TCGA-VQ-A928-01A	STK24	chr13	99228999	-	SLC15A1	chr13	99379113	-
In-frame	ENST00000400602	ENST00000278412		TCGA	RV	STAD	TCGA-CG-4477-01A	XPO4	chr13	21476809	-	SSRP1	chr11	57102122	-
In-frame	ENST00000255305	ENST00000278412		TCGA	RV	STAD	TCGA-CG-4477-01A	XPO4	chr13	21476809	-	SSRP1	chr11	57102122	-
5UTR-3CDS	ENST00000490513	ENST00000278412		TCGA	RV	STAD	TCGA-CG-4477-01A	XPO4	chr13	21476809	-	SSRP1	chr11	57102122	-
intron-3CDS	ENST00000410075	ENST00000303714		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
intron-intron	ENST00000410075	ENST00000409829		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
intron-intron	ENST00000410075	ENST00000409349		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
intron-3CDS	ENST00000377802	ENST00000303714		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
intron-intron	ENST00000377802	ENST00000409829		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
intron-intron	ENST00000377802	ENST00000409349		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
Frame-shit	ENST00000355812	ENST00000303714		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000355812	ENST00000409829		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000355812	ENST00000409349		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
Frame-shit	ENST00000409544	ENST00000303714		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000409544	ENST00000409829		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000409544	ENST00000409349		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
Frame-shit	ENST00000264447	ENST00000303714		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000264447	ENST00000409829		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000264447	ENST00000409349		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
Frame-shit	ENST00000409407	ENST00000303714		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000409407	ENST00000409829		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
5CDS-intron	ENST00000409407	ENST00000409349		TCGA	RV	STAD	TCGA-VQ-A92D-01A	ZNF638	chr2	71645769	+	ANTXR1	chr2	69472357	+
In-frame	ENST00000540274	ENST00000276816		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
In-frame	ENST00000540274	ENST00000394909		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
Frame-shit	ENST00000377307	ENST00000276816		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
Frame-shit	ENST00000377307	ENST00000394909		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
Frame-shit	ENST00000276826	ENST00000276816		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
Frame-shit	ENST00000276826	ENST00000394909		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
5UTR-3CDS	ENST00000528810	ENST00000276816		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
5UTR-3CDS	ENST00000528810	ENST00000394909		TCGA	RV	STAD	TCGA-BR-7716-01A	ARHGAP39	chr8	145770633	-	ZNF16	chr8	146157976	-
5CDS-5UTR	ENST00000394532	ENST00000535750		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394532	ENST00000535126		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394532	ENST00000544844		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394532	ENST00000308774		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394532	ENST00000539854		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000309032	ENST00000535750		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000309032	ENST00000535126		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000309032	ENST00000544844		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000309032	ENST00000308774		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000309032	ENST00000539854		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000544785	ENST00000535750		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000544785	ENST00000535126		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000544785	ENST00000544844		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000544785	ENST00000308774		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000544785	ENST00000539854		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394531	ENST00000535750		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394531	ENST00000535126		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394531	ENST00000544844		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394531	ENST00000308774		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
5CDS-5UTR	ENST00000394531	ENST00000539854		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAD	chr11	64051654	-	TRMT112	chr11	64084837	-
Frame-shit	ENST00000552983	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552983	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552983	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000549982		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000361630		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000552217		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000393128		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000547098		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000548545		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000552938		TCGA	RV	STAD	TCGA-BR-4357-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
In-frame	ENST00000358232	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000358232	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000358232	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000358232	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000358232	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000358232	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000358232	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000351393	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000351393	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000351393	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000351393	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000351393	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000351393	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000351393	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000442325	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000442325	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000442325	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000442325	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000442325	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000442325	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000442325	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000423854	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000423854	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000423854	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000423854	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000423854	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000423854	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000423854	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000350494	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000350494	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000350494	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000350494	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000350494	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000350494	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000350494	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000542824	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000542824	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000542824	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000542824	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
In-frame	ENST00000542824	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000542824	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
5CDS-intron	ENST00000542824	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-3CDS	ENST00000542050	ENST00000590898		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-3CDS	ENST00000542050	ENST00000399022		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-3CDS	ENST00000542050	ENST00000337059		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-3CDS	ENST00000542050	ENST00000357384		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-3CDS	ENST00000542050	ENST00000588737		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-intron	ENST00000542050	ENST00000319040		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
3UTR-intron	ENST00000542050	ENST00000588459		TCGA	RV	STAD	TCGA-KB-A6F7-01A	ELP2	chr18	33736617	+	RPRD1A	chr18	33573263	-
Frame-shit	ENST00000325324	ENST00000401507		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000325324	ENST00000509663		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000325324	ENST00000381103		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000325324	ENST00000407818		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000325324	ENST00000506857		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
Frame-shit	ENST00000409296	ENST00000401507		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000409296	ENST00000509663		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000409296	ENST00000381103		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000409296	ENST00000407818		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
5CDS-intron	ENST00000409296	ENST00000506857		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-3CDS	ENST00000409534	ENST00000401507		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000409534	ENST00000509663		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000409534	ENST00000381103		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000409534	ENST00000407818		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000409534	ENST00000506857		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-3CDS	ENST00000512177	ENST00000401507		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000512177	ENST00000509663		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000512177	ENST00000381103		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000512177	ENST00000407818		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-intron	ENST00000512177	ENST00000506857		TCGA	RV	STAD	TCGA-CG-4443-01A	IPO11	chr5	61733244	+	KIF2A	chr5	61669514	+
intron-3CDS	ENST00000264674	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000264674	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000264674	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000264674	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000264674	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000392736	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000392736	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000392736	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000392736	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000392736	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000464456	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000464456	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000464456	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000464456	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000464456	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000472280	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000472280	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000472280	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000472280	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000472280	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
In-frame	ENST00000494292	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
In-frame	ENST00000494292	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
In-frame	ENST00000494292	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
In-frame	ENST00000494292	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
5CDS-5UTR	ENST00000494292	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000468789	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000468789	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000468789	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000468789	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000468789	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000460814	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000460814	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000460814	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000460814	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000460814	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000433243	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000433243	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000433243	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-3CDS	ENST00000433243	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
intron-5UTR	ENST00000433243	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
5UTR-3CDS	ENST00000485957	ENST00000446859		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
5UTR-3CDS	ENST00000485957	ENST00000316515		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
5UTR-3CDS	ENST00000485957	ENST00000522830		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
5UTR-3CDS	ENST00000485957	ENST00000522526		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
5UTR-5UTR	ENST00000485957	ENST00000524327		TCGA	RV	STAD	TCGA-VQ-A8DT-01A	MECOM	chr3	169098975	-	LRRC34	chr3	169521969	-
Frame-shit	ENST00000409837	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000409837	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000409837	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000409837	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000409837	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000409837	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409340	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409340	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409340	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409340	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409340	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000409340	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000260953	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000260953	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000260953	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000260953	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000260953	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000260953	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409965	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409965	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409965	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409965	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000409965	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000409965	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000392640	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000392640	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000392640	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000392640	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000392640	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000392640	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000308099	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000308099	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000308099	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000308099	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
Frame-shit	ENST00000308099	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000308099	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000410097	ENST00000360843		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000410097	ENST00000431350		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000410097	ENST00000442919		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000410097	ENST00000521943		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000410097	ENST00000434911		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
5CDS-5UTR	ENST00000410097	ENST00000486857		TCGA	RV	STAD	TCGA-CG-4449-01A	METTL5	chr2	170680999	-	TLK1	chr2	171914707	-
In-frame	ENST00000407008	ENST00000509603		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
In-frame	ENST00000407008	ENST00000319524		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000407008	ENST00000268763		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
5CDS-5UTR	ENST00000407008	ENST00000398988		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
5CDS-intron	ENST00000407008	ENST00000581975		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
5CDS-intron	ENST00000407008	ENST00000582410		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
5CDS-intron	ENST00000407008	ENST00000578981		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-3CDS	ENST00000583517	ENST00000509603		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-3CDS	ENST00000583517	ENST00000319524		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-5UTR	ENST00000583517	ENST00000268763		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-5UTR	ENST00000583517	ENST00000398988		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-intron	ENST00000583517	ENST00000581975		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-intron	ENST00000583517	ENST00000582410		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-intron	ENST00000583517	ENST00000578981		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-3CDS	ENST00000582037	ENST00000509603		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-3CDS	ENST00000582037	ENST00000319524		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-5UTR	ENST00000582037	ENST00000268763		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-5UTR	ENST00000582037	ENST00000398988		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-intron	ENST00000582037	ENST00000581975		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-intron	ENST00000582037	ENST00000582410		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
intron-intron	ENST00000582037	ENST00000578981		TCGA	RV	STAD	TCGA-BR-4357-01A	NLK	chr17	26512291	+	KSR1	chr17	25904518	+
In-frame	ENST00000381553	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000381553	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000381553	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000381553	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000381553	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
In-frame	ENST00000381542	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000381542	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000381542	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000381542	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000381542	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
In-frame	ENST00000360581	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000360581	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000360581	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000360581	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000360581	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
In-frame	ENST00000359791	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000359791	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000359791	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000359791	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000359791	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
In-frame	ENST00000531252	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000531252	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000531252	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000531252	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000531252	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
In-frame	ENST00000381539	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000381539	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000381539	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000381539	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000381539	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
In-frame	ENST00000465305	ENST00000309930		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000465305	ENST00000401647		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
Frame-shit	ENST00000465305	ENST00000335693		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-3UTR	ENST00000465305	ENST00000464028		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5CDS-intron	ENST00000465305	ENST00000540834		TCGA	RV	STAD	TCGA-BR-7959-01A	NPSR1	chr7	34698171	+	C7orf10	chr7	40899915	+
5UTR-5UTR	ENST00000361757	ENST00000590083		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
5UTR-5UTR	ENST00000361757	ENST00000382477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
5UTR-5UTR	ENST00000361757	ENST00000215376		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
5UTR-5UTR	ENST00000587024	ENST00000590083		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
5UTR-5UTR	ENST00000587024	ENST00000382477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
5UTR-5UTR	ENST00000587024	ENST00000215376		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
intron-5UTR	ENST00000438103	ENST00000590083		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
intron-5UTR	ENST00000438103	ENST00000382477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
intron-5UTR	ENST00000438103	ENST00000215376		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1236120	-
5UTR-3CDS	ENST00000425528	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000425528	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-5UTR	ENST00000425528	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000441499	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000441499	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-5UTR	ENST00000441499	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000356861	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000356861	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-5UTR	ENST00000356861	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000450764	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000450764	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-5UTR	ENST00000450764	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000592287	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000592287	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-5UTR	ENST00000592287	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000588216	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-3CDS	ENST00000588216	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
5UTR-5UTR	ENST00000588216	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000589956	ENST00000397668		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-3CDS	ENST00000589956	ENST00000264827		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
intron-5UTR	ENST00000589956	ENST00000589965		TCGA	RV	STAD	TCGA-F1-6875-01A	TNPO2	chr19	12834063	-	HOOK2	chr19	12885711	-
Frame-shit	ENST00000609104	ENST00000356352		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000609104	ENST00000357604		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000609104	ENST00000397053		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
5CDS-intron	ENST00000609104	ENST00000460569		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000277575	ENST00000356352		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000277575	ENST00000357604		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000277575	ENST00000397053		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
5CDS-intron	ENST00000277575	ENST00000460569		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000379237	ENST00000356352		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000379237	ENST00000357604		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000379237	ENST00000397053		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
5CDS-intron	ENST00000379237	ENST00000460569		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-3CDS	ENST00000443016	ENST00000356352		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-3CDS	ENST00000443016	ENST00000357604		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-3CDS	ENST00000443016	ENST00000397053		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-intron	ENST00000443016	ENST00000460569		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-3CDS	ENST00000609853	ENST00000356352		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-3CDS	ENST00000609853	ENST00000357604		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-3CDS	ENST00000609853	ENST00000397053		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
intron-intron	ENST00000609853	ENST00000460569		TCGA	RV	STAD	TCGA-BR-8289-01A	USP6NL	chr10	11523769	-	UPF2	chr10	11985167	-
Frame-shit	ENST00000402377	ENST00000405709		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000402377	ENST00000331762		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000402377	ENST00000452895		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000402377	ENST00000415362		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000402377	ENST00000447215		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
Frame-shit	ENST00000402377	ENST00000437687		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000402377	ENST00000489381		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5CDS-5UTR	ENST00000402377	ENST00000450877		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000395385	ENST00000405709		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000395385	ENST00000331762		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000395385	ENST00000452895		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000395385	ENST00000415362		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000395385	ENST00000447215		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000395385	ENST00000437687		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-5UTR	ENST00000395385	ENST00000489381		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-5UTR	ENST00000395385	ENST00000450877		TCGA	RV	STAD	TCGA-BR-8289-01A	ZNF681	chr19	23941549	-	IMMP2L	chr7	110603621	-
5UTR-3CDS	ENST00000368346	ENST00000376238		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-3CDS	ENST00000368346	ENST00000537648		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-intron	ENST00000368346	ENST00000495823		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-3CDS	ENST00000392403	ENST00000376238		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-3CDS	ENST00000392403	ENST00000537648		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-intron	ENST00000392403	ENST00000495823		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-3CDS	ENST00000548830	ENST00000376238		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-3CDS	ENST00000548830	ENST00000537648		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
5UTR-intron	ENST00000548830	ENST00000495823		TCGA	RV	STAD	TCGA-BR-4357-01A	ASH1L	chr1	155531944	-	SLC28A3	chr9	86909190	-
In-frame	ENST00000217402	ENST00000342704		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
In-frame	ENST00000217402	ENST00000375279		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000217402	ENST00000344201		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000217402	ENST00000397798		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000217402	ENST00000346541		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000217402	ENST00000397800		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000217402	ENST00000492345		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000217402	ENST00000359606		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000217402	ENST00000491618		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000217402	ENST00000543126		TCGA	RV	STAD	TCGA-CG-4449-01A	CHMP4B	chr20	32399464	+	CBFA2T2	chr20	32194762	+
5UTR-3CDS	ENST00000309137	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
intron-3CDS	ENST00000389447	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
5UTR-3CDS	ENST00000566077	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
intron-3CDS	ENST00000569266	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
5UTR-3CDS	ENST00000567439	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
5UTR-3CDS	ENST00000564108	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
intron-3CDS	ENST00000562400	ENST00000258214		TCGA	RV	STAD	TCGA-CG-4475-01A	FAM192A	chr16	57219733	-	CCDC102A	chr16	57555088	-
In-frame	ENST00000357308	ENST00000356175		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
In-frame	ENST00000357308	ENST00000358273		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000357308	ENST00000431387		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000357308	ENST00000581113		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000357308	ENST00000417592		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000357308	ENST00000444181		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
In-frame	ENST00000361060	ENST00000356175		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
In-frame	ENST00000361060	ENST00000358273		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000361060	ENST00000431387		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000361060	ENST00000581113		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000361060	ENST00000417592		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5CDS-intron	ENST00000361060	ENST00000444181		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
intron-3CDS	ENST00000494201	ENST00000356175		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
intron-3CDS	ENST00000494201	ENST00000358273		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
intron-intron	ENST00000494201	ENST00000431387		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
intron-intron	ENST00000494201	ENST00000581113		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
intron-intron	ENST00000494201	ENST00000417592		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
intron-intron	ENST00000494201	ENST00000444181		TCGA	RV	STAD	TCGA-CG-4477-01A	GFPT1	chr2	69565030	-	NF1	chr17	29664837	+
5UTR-3CDS	ENST00000420083	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000420083	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000420083	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000420083	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000420083	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-intron	ENST00000420083	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000449870	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000449870	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000449870	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000449870	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000449870	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-intron	ENST00000449870	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000318511	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000318511	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000318511	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000318511	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000318511	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-intron	ENST00000318511	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000407004	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000407004	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000407004	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000407004	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000407004	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-intron	ENST00000407004	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000589998	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000589998	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000589998	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000589998	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-3CDS	ENST00000589998	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5UTR-intron	ENST00000589998	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000250241	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000250241	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000250241	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000250241	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000250241	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000250241	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000592763	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000592763	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000592763	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000592763	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000592763	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000592763	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000588657	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000588657	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000588657	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000588657	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000588657	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000588657	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000590261	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000590261	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000590261	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000590261	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000590261	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000590261	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000586544	ENST00000592685		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000586544	ENST00000380702		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000586544	ENST00000352831		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000586544	ENST00000293683		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-3CDS	ENST00000586544	ENST00000440014		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
intron-intron	ENST00000586544	ENST00000344979		TCGA	RV	STAD	TCGA-BR-8060-01A	ILF3	chr19	10765163	+	PDE4A	chr19	10556894	+
5CDS-intron	ENST00000375608	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375608	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375608	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375608	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000442652	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000442652	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000442652	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000442652	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375604	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375604	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375604	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375604	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397030	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397030	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397030	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397030	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000535094	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000535094	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000535094	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000535094	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000421756	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000421756	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000421756	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000421756	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375601	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375601	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375601	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375601	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397036	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397036	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397036	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397036	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000434480	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000434480	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000434480	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000434480	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000423482	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000423482	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000423482	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000423482	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375597	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375597	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375597	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000375597	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397024	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397024	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397024	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-intron	ENST00000397024	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000480321	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000480321	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000480321	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000480321	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397021	ENST00000492698		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397021	ENST00000252999		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397021	ENST00000370692		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
intron-intron	ENST00000397021	ENST00000370677		TCGA	RV	STAD	TCGA-CG-4443-01A	MCF2L	chr13	113679072	+	LAMA5	chr20	60922084	-
5CDS-5UTR	ENST00000397661	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000397661	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000397661	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000397661	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000397661	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000592199	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000592199	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000592199	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000592199	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000592199	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587760	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587760	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587760	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587760	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587760	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000585575	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000585575	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000585575	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000585575	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000585575	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000360105	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000360105	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000360105	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000360105	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000360105	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000588228	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000588228	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000588228	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000588228	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000588228	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587260	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587260	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587260	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587260	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000587260	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000358552	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000358552	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000358552	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000358552	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
5CDS-5UTR	ENST00000358552	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
intron-5UTR	ENST00000588680	ENST00000395324		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
intron-5UTR	ENST00000588680	ENST00000229022		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
intron-5UTR	ENST00000588680	ENST00000549336		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
intron-5UTR	ENST00000588680	ENST00000550325		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
intron-5UTR	ENST00000588680	ENST00000535672		TCGA	RV	STAD	TCGA-FP-8631-01A	NFIX	chr19	13136366	+	VDR	chr12	48272898	-
Frame-shit	ENST00000258742	ENST00000342947		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000258742	ENST00000419307		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000258742	ENST00000545231		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000258742	ENST00000409970		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000258742	ENST00000409775		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000258742	ENST00000559637		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
Frame-shit	ENST00000410002	ENST00000342947		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000410002	ENST00000419307		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000410002	ENST00000545231		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000410002	ENST00000409970		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000410002	ENST00000409775		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
5CDS-5UTR	ENST00000410002	ENST00000559637		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
3UTR-3CDS	ENST00000487595	ENST00000342947		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
3UTR-5UTR	ENST00000487595	ENST00000419307		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
3UTR-5UTR	ENST00000487595	ENST00000545231		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
3UTR-5UTR	ENST00000487595	ENST00000409970		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
3UTR-5UTR	ENST00000487595	ENST00000409775		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
3UTR-5UTR	ENST00000487595	ENST00000559637		TCGA	RV	STAD	TCGA-BR-8077-01A	NUPL2	chr7	23221825	+	DFNA5	chr7	24758837	-
Frame-shit	ENST00000337959	ENST00000215909		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000337959	ENST00000489315		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
Frame-shit	ENST00000263246	ENST00000215909		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000263246	ENST00000489315		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
In-frame	ENST00000407585	ENST00000215909		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000407585	ENST00000489315		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
Frame-shit	ENST00000403744	ENST00000215909		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000403744	ENST00000489315		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
In-frame	ENST00000402229	ENST00000215909		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
5CDS-3UTR	ENST00000402229	ENST00000489315		TCGA	RV	STAD	TCGA-BR-8295-01A	PACSIN2	chr22	43272143	-	LGALS1	chr22	38072993	+
Frame-shit	ENST00000338366	ENST00000256637		TCGA	RV	STAD	TCGA-BR-4357-01A	TAF13	chr1	109618543	-	SORT1	chr1	109867711	-
Frame-shit	ENST00000338366	ENST00000538502		TCGA	RV	STAD	TCGA-BR-4357-01A	TAF13	chr1	109618543	-	SORT1	chr1	109867711	-
5CDS-intron	ENST00000338366	ENST00000482236		TCGA	RV	STAD	TCGA-BR-4357-01A	TAF13	chr1	109618543	-	SORT1	chr1	109867711	-
intron-intron	ENST00000425687	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
intron-intron	ENST00000425687	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
intron-intron	ENST00000425687	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
intron-intron	ENST00000425687	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000263552	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000263552	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000263552	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000263552	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000336425	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000336425	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000336425	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000336425	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000436047	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000436047	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000436047	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000436047	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000416849	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000416849	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000416849	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000416849	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000414508	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000414508	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000414508	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000414508	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000448866	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000448866	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000448866	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000448866	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000455353	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000455353	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000455353	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000455353	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000458722	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000458722	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000458722	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000458722	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000411653	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000411653	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000411653	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000411653	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
3UTR-intron	ENST00000462275	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
3UTR-intron	ENST00000462275	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
3UTR-intron	ENST00000462275	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
3UTR-intron	ENST00000462275	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000539806	ENST00000463284		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000539806	ENST00000358435		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000539806	ENST00000405021		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
5CDS-intron	ENST00000539806	ENST00000372879		TCGA	RV	STAD	TCGA-KB-A93J-01A	TBXAS1	chr7	139529278	+	TOMM7	chr7	22857667	-
intron-intron	ENST00000379056	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000379056	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000529421	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000529421	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000530705	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000530705	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000379060	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000379060	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000379055	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000379055	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000309246	ENST00000484427		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
intron-intron	ENST00000309246	ENST00000371764		TCGA	RV	STAD	TCGA-BR-8485-01A	TPT1	chr13	45911313	-	DDX27	chr20	47849303	+
Frame-shit	ENST00000355947	ENST00000398027		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000355947	ENST00000490721		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000355947	ENST00000360951		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000355947	ENST00000324725		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000349062	ENST00000398027		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000349062	ENST00000490721		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000349062	ENST00000360951		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000349062	ENST00000324725		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000354241	ENST00000398027		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000354241	ENST00000490721		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000354241	ENST00000360951		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000354241	ENST00000324725		TCGA	RV	STAD	TCGA-VQ-A925-01A	TRIM4	chr7	99516632	-	ZCWPW1	chr7	100007167	-
Frame-shit	ENST00000273038	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
5CDS-5UTR	ENST00000273038	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000430365	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000430365	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
5UTR-3CDS	ENST00000404339	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
5UTR-5UTR	ENST00000404339	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000480288	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000480288	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000413604	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000413604	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000451674	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000451674	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-3CDS	ENST00000424529	ENST00000273221		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
intron-5UTR	ENST00000424529	ENST00000473088		TCGA	RV	STAD	TCGA-VQ-A92D-01A	VGLL4	chr3	11744445	-	IQSEC1	chr3	12983365	-
5CDS-intron	ENST00000395996	ENST00000520791		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000523368		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000297565		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000435298		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000522510		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000395996	ENST00000457907		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000358544	ENST00000520791		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000523368		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000297565		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000435298		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000522510		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000358544	ENST00000457907		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000357162	ENST00000520791		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000523368		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000297565		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000435298		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000522510		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000357162	ENST00000457907		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000355155	ENST00000520791		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000523368		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000297565		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000435298		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000522510		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000355155	ENST00000457907		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-intron	ENST00000441350	ENST00000520791		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000523368		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000297565		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000435298		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000522510		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
5CDS-5UTR	ENST00000441350	ENST00000457907		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
intron-intron	ENST00000521932	ENST00000520791		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000523368		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000297565		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000435298		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000522510		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
intron-5UTR	ENST00000521932	ENST00000457907		TCGA	RV	STAD	TCGA-B7-A5TN-01A	VPS13B	chr8	100026163	+	OSR2	chr8	99961067	+
Frame-shit	ENST00000298125	ENST00000379561		TCGA	RV	STAD	TCGA-BR-8678-01A	WDFY2	chr13	52158960	+	FOXO1	chr13	41134997	-
5CDS-5UTR	ENST00000298125	ENST00000473775		TCGA	RV	STAD	TCGA-BR-8678-01A	WDFY2	chr13	52158960	+	FOXO1	chr13	41134997	-
intron-3CDS	ENST00000460145	ENST00000379561		TCGA	RV	STAD	TCGA-BR-8678-01A	WDFY2	chr13	52158960	+	FOXO1	chr13	41134997	-
intron-5UTR	ENST00000460145	ENST00000473775		TCGA	RV	STAD	TCGA-BR-8678-01A	WDFY2	chr13	52158960	+	FOXO1	chr13	41134997	-
In-frame	ENST00000532828	ENST00000444716		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000532828	ENST00000302541		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000532828	ENST00000425621		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000532828	ENST00000396217		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
5CDS-3UTR	ENST00000532828	ENST00000459828		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
5CDS-3UTR	ENST00000532828	ENST00000539167		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000531805	ENST00000444716		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000531805	ENST00000302541		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000531805	ENST00000425621		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000531805	ENST00000396217		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000531805	ENST00000459828		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000531805	ENST00000539167		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000312908	ENST00000444716		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000312908	ENST00000302541		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000312908	ENST00000425621		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000312908	ENST00000396217		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000312908	ENST00000459828		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000312908	ENST00000539167		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000527838	ENST00000444716		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000527838	ENST00000302541		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000527838	ENST00000425621		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
In-frame	ENST00000527838	ENST00000396217		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
5CDS-3UTR	ENST00000527838	ENST00000459828		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
5CDS-3UTR	ENST00000527838	ENST00000539167		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000586320	ENST00000444716		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000586320	ENST00000302541		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000586320	ENST00000425621		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000586320	ENST00000396217		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000586320	ENST00000459828		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000586320	ENST00000539167		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000534363	ENST00000444716		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000534363	ENST00000302541		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000534363	ENST00000425621		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3CDS	ENST00000534363	ENST00000396217		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000534363	ENST00000459828		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
intron-3UTR	ENST00000534363	ENST00000539167		TCGA	RV	STAD	TCGA-BR-7901-01A	ZNF585B	chr19	37697942	-	MYRIP	chr3	40223711	+
5UTR-3CDS	ENST00000265742	ENST00000053243		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ANKIB1	chr7	91875833	+	TNFRSF17	chr16	12060052	+
5UTR-intron	ENST00000265742	ENST00000396495		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ANKIB1	chr7	91875833	+	TNFRSF17	chr16	12060052	+
intron-3CDS	ENST00000486698	ENST00000053243		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ANKIB1	chr7	91875833	+	TNFRSF17	chr16	12060052	+
intron-intron	ENST00000486698	ENST00000396495		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ANKIB1	chr7	91875833	+	TNFRSF17	chr16	12060052	+
In-frame	ENST00000327827	ENST00000268251		TCGA	RV	STAD	TCGA-VQ-A922-01A	C16orf72	chr16	9197116	+	ABAT	chr16	8851614	+
In-frame	ENST00000327827	ENST00000396600		TCGA	RV	STAD	TCGA-VQ-A922-01A	C16orf72	chr16	9197116	+	ABAT	chr16	8851614	+
5CDS-intron	ENST00000327827	ENST00000563215		TCGA	RV	STAD	TCGA-VQ-A922-01A	C16orf72	chr16	9197116	+	ABAT	chr16	8851614	+
5CDS-intron	ENST00000327827	ENST00000567812		TCGA	RV	STAD	TCGA-VQ-A922-01A	C16orf72	chr16	9197116	+	ABAT	chr16	8851614	+
5CDS-intron	ENST00000327827	ENST00000425191		TCGA	RV	STAD	TCGA-VQ-A922-01A	C16orf72	chr16	9197116	+	ABAT	chr16	8851614	+
5CDS-intron	ENST00000327827	ENST00000569156		TCGA	RV	STAD	TCGA-VQ-A922-01A	C16orf72	chr16	9197116	+	ABAT	chr16	8851614	+
Frame-shit	ENST00000378863	ENST00000460006		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
Frame-shit	ENST00000378863	ENST00000379062		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
5CDS-3UTR	ENST00000378863	ENST00000379070		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
5CDS-3UTR	ENST00000378863	ENST00000535100		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3CDS	ENST00000452938	ENST00000460006		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3CDS	ENST00000452938	ENST00000379062		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3UTR	ENST00000452938	ENST00000379070		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3UTR	ENST00000452938	ENST00000535100		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
Frame-shit	ENST00000378868	ENST00000460006		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
Frame-shit	ENST00000378868	ENST00000379062		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
5CDS-3UTR	ENST00000378868	ENST00000379070		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
5CDS-3UTR	ENST00000378868	ENST00000535100		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3CDS	ENST00000464921	ENST00000460006		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3CDS	ENST00000464921	ENST00000379062		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3UTR	ENST00000464921	ENST00000379070		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
3UTR-3UTR	ENST00000464921	ENST00000535100		TCGA	RV	STAD	TCGA-CG-4449-01A	CRLS1	chr20	6012726	+	CDS2	chr20	5165504	+
Frame-shit	ENST00000400967	ENST00000367382		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
In-frame	ENST00000400967	ENST00000309309		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000400967	ENST00000281087		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000400967	ENST00000367381		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000400967	ENST00000489986		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000235453	ENST00000367382		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000235453	ENST00000309309		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000235453	ENST00000281087		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000235453	ENST00000367381		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000235453	ENST00000489986		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000367396	ENST00000367382		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
In-frame	ENST00000367396	ENST00000309309		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000367396	ENST00000281087		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000367396	ENST00000367381		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
Frame-shit	ENST00000367396	ENST00000489986		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
intron-3CDS	ENST00000477581	ENST00000367382		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
intron-3CDS	ENST00000477581	ENST00000309309		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
intron-3CDS	ENST00000477581	ENST00000281087		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
intron-3CDS	ENST00000477581	ENST00000367381		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
intron-3CDS	ENST00000477581	ENST00000489986		TCGA	RV	STAD	TCGA-VQ-A92D-01A	DENND1B	chr1	197684161	-	ATP6V1G3	chr1	198498311	-
5CDS-5UTR	ENST00000366991	ENST00000469606		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000366994		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000366993		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000366992		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000366991	ENST00000440600		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000469606		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000366994		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000366993		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000366992		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5CDS-5UTR	ENST00000542077	ENST00000440600		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000469606		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000366994		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000366993		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000366992		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
3UTR-5UTR	ENST00000475419	ENST00000440600		TCGA	RV	STAD	TCGA-BR-8362-01A	DTL	chr1	212220759	+	INTS7	chr1	212194554	-
5UTR-3CDS	ENST00000540582	ENST00000356607		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
5UTR-5UTR	ENST00000540582	ENST00000538836		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
5UTR-intron	ENST00000540582	ENST00000492696		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-3CDS	ENST00000374491	ENST00000356607		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-5UTR	ENST00000374491	ENST00000538836		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-intron	ENST00000374491	ENST00000492696		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-3CDS	ENST00000374492	ENST00000356607		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-5UTR	ENST00000374492	ENST00000538836		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-intron	ENST00000374492	ENST00000492696		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-3CDS	ENST00000541621	ENST00000356607		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-5UTR	ENST00000541621	ENST00000538836		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-intron	ENST00000541621	ENST00000492696		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-3CDS	ENST00000542871	ENST00000356607		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-5UTR	ENST00000542871	ENST00000538836		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
intron-intron	ENST00000542871	ENST00000492696		TCGA	RV	STAD	TCGA-BR-7197-01A	EDEM2	chr20	33859808	-	PEX14	chr1	10659295	+
5CDS-intron	ENST00000309311	ENST00000354817		TCGA	RV	STAD	TCGA-BR-8680-01A	EEF2	chr19	3976055	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000309311	ENST00000527202		TCGA	RV	STAD	TCGA-BR-8680-01A	EEF2	chr19	3976055	-	FAR1	chr11	13744912	+
5CDS-intron	ENST00000309311	ENST00000532502		TCGA	RV	STAD	TCGA-BR-8680-01A	EEF2	chr19	3976055	-	FAR1	chr11	13744912	+
intron-intron	ENST00000600720	ENST00000354817		TCGA	RV	STAD	TCGA-BR-8680-01A	EEF2	chr19	3976055	-	FAR1	chr11	13744912	+
intron-intron	ENST00000600720	ENST00000527202		TCGA	RV	STAD	TCGA-BR-8680-01A	EEF2	chr19	3976055	-	FAR1	chr11	13744912	+
intron-intron	ENST00000600720	ENST00000532502		TCGA	RV	STAD	TCGA-BR-8680-01A	EEF2	chr19	3976055	-	FAR1	chr11	13744912	+
5CDS-5UTR	ENST00000251808	ENST00000353107		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000251808	ENST00000522439		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
5CDS-3UTR	ENST00000251808	ENST00000519765		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000395927	ENST00000353107		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
5CDS-5UTR	ENST00000395927	ENST00000522439		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
5CDS-3UTR	ENST00000395927	ENST00000519765		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000517674	ENST00000353107		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
intron-5UTR	ENST00000517674	ENST00000522439		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
intron-3UTR	ENST00000517674	ENST00000519765		TCGA	RV	STAD	TCGA-CG-4449-01A	GRHL2	chr8	102555664	+	POLR2K	chr8	101163575	+
Frame-shit	ENST00000361961	ENST00000315396		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
5CDS-intron	ENST00000361961	ENST00000497803		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
Frame-shit	ENST00000395670	ENST00000315396		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
5CDS-intron	ENST00000395670	ENST00000497803		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
Frame-shit	ENST00000544797	ENST00000315396		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
5CDS-intron	ENST00000544797	ENST00000497803		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
Frame-shit	ENST00000361418	ENST00000315396		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
5CDS-intron	ENST00000361418	ENST00000497803		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
Frame-shit	ENST00000541463	ENST00000315396		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
5CDS-intron	ENST00000541463	ENST00000497803		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
intron-3CDS	ENST00000547745	ENST00000315396		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
intron-intron	ENST00000547745	ENST00000497803		TCGA	RV	STAD	TCGA-KB-A93J-01A	KIF21A	chr12	39724548	-	CCDC114	chr19	48815373	-
In-frame	ENST00000430223	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
In-frame	ENST00000430223	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
In-frame	ENST00000430223	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
5CDS-intron	ENST00000430223	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
In-frame	ENST00000341166	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
In-frame	ENST00000341166	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
In-frame	ENST00000341166	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
5CDS-intron	ENST00000341166	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
intron-3CDS	ENST00000520545	ENST00000360863		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
intron-3CDS	ENST00000520545	ENST00000523287		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
intron-3CDS	ENST00000520545	ENST00000523437		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
intron-intron	ENST00000520545	ENST00000519421		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	NIPAL2	chr8	99306231	-	RGS22	chr8	100977658	-
Frame-shit	ENST00000249269	ENST00000566780		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000249269	ENST00000406884		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
In-frame	ENST00000249269	ENST00000539474		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000249269	ENST00000402655		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000249269	ENST00000408984		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000249269	ENST00000355860		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000249269	ENST00000565791		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000249269	ENST00000569818		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000428154	ENST00000566780		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000428154	ENST00000406884		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
In-frame	ENST00000428154	ENST00000539474		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000428154	ENST00000402655		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000428154	ENST00000408984		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000428154	ENST00000355860		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000428154	ENST00000565791		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5CDS-intron	ENST00000428154	ENST00000569818		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-3CDS	ENST00000420236	ENST00000566780		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-3CDS	ENST00000420236	ENST00000406884		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-3CDS	ENST00000420236	ENST00000539474		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-3CDS	ENST00000420236	ENST00000402655		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-intron	ENST00000420236	ENST00000408984		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-intron	ENST00000420236	ENST00000355860		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-intron	ENST00000420236	ENST00000565791		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
5UTR-intron	ENST00000420236	ENST00000569818		TCGA	RV	STAD	TCGA-VQ-A928-01A	PMPCB	chr7	102939155	+	WWOX	chr16	79245505	+
Frame-shit	ENST00000518852	ENST00000356766		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000518852	ENST00000521356		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000518852	ENST00000454009		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000240139	ENST00000356766		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000240139	ENST00000521356		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000240139	ENST00000454009		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000289963	ENST00000356766		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000289963	ENST00000521356		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000289963	ENST00000454009		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000397775	ENST00000356766		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000397775	ENST00000521356		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
Frame-shit	ENST00000397775	ENST00000454009		TCGA	RV	STAD	TCGA-BR-7716-01A	PPP3CC	chr8	22298971	+	PIWIL2	chr8	22210472	+
5CDS-3UTR	ENST00000341307	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000341307	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000356000	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000356000	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
3UTR-3UTR	ENST00000538995	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
3UTR-3UTR	ENST00000538995	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000377819	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000377819	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000339997	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000339997	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000540798	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000540798	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000537981	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000537981	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000354497	ENST00000310969		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
5CDS-3UTR	ENST00000354497	ENST00000279178		TCGA	RV	STAD	TCGA-CG-4449-01A	RTN3	chr11	63449250	+	SLC22A9	chr11	63175584	+
intron-3CDS	ENST00000430069	ENST00000399799		TCGA	RV	STAD	TCGA-BR-7901-01A	TBL1XR1	chr3	176914909	-	ROCK1	chr18	18619524	-
5UTR-3CDS	ENST00000457928	ENST00000399799		TCGA	RV	STAD	TCGA-BR-7901-01A	TBL1XR1	chr3	176914909	-	ROCK1	chr18	18619524	-
Frame-shit	ENST00000409206	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000409594	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000289528	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000409412	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000409097	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000409336	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000409217	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
3UTR-3CDS	ENST00000468301	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000409319	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
Frame-shit	ENST00000444522	ENST00000258415		TCGA	RV	STAD	TCGA-BR-7197-01A	ZFAND2B	chr2	220071764	+	CYP27A1	chr2	219674300	+
In-frame	ENST00000285238	ENST00000541920		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000285238	ENST00000300441		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000285238	ENST00000504392		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000285238	ENST00000427954		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000285238	ENST00000502667		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
5CDS-3UTR	ENST00000285238	ENST00000506085		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000515707	ENST00000541920		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000515707	ENST00000300441		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000515707	ENST00000504392		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000515707	ENST00000427954		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000515707	ENST00000502667		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
5CDS-3UTR	ENST00000515707	ENST00000506085		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000427699	ENST00000541920		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000427699	ENST00000300441		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000427699	ENST00000504392		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000427699	ENST00000427954		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
In-frame	ENST00000427699	ENST00000502667		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
5CDS-3UTR	ENST00000427699	ENST00000506085		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
intron-3CDS	ENST00000510891	ENST00000541920		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
intron-3CDS	ENST00000510891	ENST00000300441		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
intron-3CDS	ENST00000510891	ENST00000504392		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
intron-3CDS	ENST00000510891	ENST00000427954		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
intron-3CDS	ENST00000510891	ENST00000502667		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
intron-3UTR	ENST00000510891	ENST00000506085		TCGA	RV	STAD	TCGA-BR-8590-01A	ABCC3	chr17	48712342	+	ACSF2	chr17	48548389	+
5CDS-intron	ENST00000295598	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8682-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000537345	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8682-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
5CDS-intron	ENST00000369496	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8682-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
intron-intron	ENST00000491156	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8682-01A	ATP1A1	chr1	116947394	+	DDX21	chr10	70723858	+
5UTR-3CDS	ENST00000377022	ENST00000400897		TCGA	RV	STAD	TCGA-CG-4449-01A	CASZ1	chr1	10856621	-	MASP2	chr1	11090939	-
5UTR-intron	ENST00000377022	ENST00000400898		TCGA	RV	STAD	TCGA-CG-4449-01A	CASZ1	chr1	10856621	-	MASP2	chr1	11090939	-
5UTR-3CDS	ENST00000344008	ENST00000400897		TCGA	RV	STAD	TCGA-CG-4449-01A	CASZ1	chr1	10856621	-	MASP2	chr1	11090939	-
5UTR-intron	ENST00000344008	ENST00000400898		TCGA	RV	STAD	TCGA-CG-4449-01A	CASZ1	chr1	10856621	-	MASP2	chr1	11090939	-
intron-3CDS	ENST00000478728	ENST00000400897		TCGA	RV	STAD	TCGA-CG-4449-01A	CASZ1	chr1	10856621	-	MASP2	chr1	11090939	-
intron-intron	ENST00000478728	ENST00000400898		TCGA	RV	STAD	TCGA-CG-4449-01A	CASZ1	chr1	10856621	-	MASP2	chr1	11090939	-
In-frame	ENST00000397224	ENST00000340630		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-5UTR	ENST00000397224	ENST00000453009		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-5UTR	ENST00000397224	ENST00000433985		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-intron	ENST00000397224	ENST00000476548		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
Frame-shit	ENST00000216187	ENST00000340630		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-5UTR	ENST00000216187	ENST00000453009		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-5UTR	ENST00000216187	ENST00000433985		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-intron	ENST00000216187	ENST00000476548		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
intron-3CDS	ENST00000366463	ENST00000340630		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
intron-5UTR	ENST00000366463	ENST00000453009		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
intron-5UTR	ENST00000366463	ENST00000433985		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
intron-intron	ENST00000366463	ENST00000476548		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
In-frame	ENST00000397223	ENST00000340630		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-5UTR	ENST00000397223	ENST00000453009		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-5UTR	ENST00000397223	ENST00000433985		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
5CDS-intron	ENST00000397223	ENST00000476548		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	FOXRED2	chr22	36897288	-	IFT27	chr22	37163906	-
In-frame	ENST00000258874	ENST00000439576		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000258874	ENST00000558207		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000258874	ENST00000559004		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000258874	ENST00000352105		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000258874	ENST00000561243		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
Frame-shit	ENST00000559722	ENST00000439576		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000559722	ENST00000558207		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000559722	ENST00000559004		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000559722	ENST00000352105		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
5CDS-intron	ENST00000559722	ENST00000561243		TCGA	RV	STAD	TCGA-IN-8462-01A	MTHFS	chr15	80181435	-	ACAN	chr15	89414613	+
Frame-shit	ENST00000356462	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5CDS-intron	ENST00000356462	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
Frame-shit	ENST00000400345	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5CDS-intron	ENST00000400345	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
Frame-shit	ENST00000589054	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5CDS-intron	ENST00000589054	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5UTR-3CDS	ENST00000256832	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5UTR-intron	ENST00000256832	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
Frame-shit	ENST00000382850	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5CDS-intron	ENST00000382850	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
Frame-shit	ENST00000256830	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
5CDS-intron	ENST00000256830	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000588516	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000588516	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000456986	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000456986	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000435432	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000435432	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000357895	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000357895	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000586263	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000586263	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000456173	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000456173	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-3CDS	ENST00000431212	ENST00000361673		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
intron-intron	ENST00000431212	ENST00000587399		TCGA	RV	STAD	TCGA-VQ-A8PD-01A	NEDD4L	chr18	55711940	+	ALPK2	chr18	56196470	-
Frame-shit	ENST00000324856	ENST00000371076		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
5CDS-3UTR	ENST00000324856	ENST00000464349		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
Frame-shit	ENST00000457599	ENST00000371076		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
5CDS-3UTR	ENST00000457599	ENST00000464349		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
Frame-shit	ENST00000374152	ENST00000371076		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
5CDS-3UTR	ENST00000374152	ENST00000464349		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
intron-3CDS	ENST00000540690	ENST00000371076		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
intron-3UTR	ENST00000540690	ENST00000464349		TCGA	RV	STAD	TCGA-BR-8679-01A	ARID1A	chr1	27059283	+	UBE2U	chr1	64686542	+
In-frame	ENST00000569600	ENST00000420329		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
5CDS-intron	ENST00000569600	ENST00000560098		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
5CDS-intron	ENST00000569600	ENST00000268184		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
5CDS-3UTR	ENST00000569600	ENST00000558619		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
In-frame	ENST00000219139	ENST00000420329		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
5CDS-intron	ENST00000219139	ENST00000560098		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
5CDS-intron	ENST00000219139	ENST00000268184		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
5CDS-3UTR	ENST00000219139	ENST00000558619		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
3UTR-3CDS	ENST00000569683	ENST00000420329		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
3UTR-intron	ENST00000569683	ENST00000560098		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
3UTR-intron	ENST00000569683	ENST00000268184		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
3UTR-3UTR	ENST00000569683	ENST00000558619		TCGA	RV	STAD	TCGA-IN-AB1X-01A	C16orf70	chr16	67166814	+	CRTC3	chr15	91136868	+
Frame-shit	ENST00000424014	ENST00000548058		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
Frame-shit	ENST00000424014	ENST00000261206		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
Frame-shit	ENST00000424014	ENST00000548324		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
In-frame	ENST00000539951	ENST00000548058		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
In-frame	ENST00000539951	ENST00000261206		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
In-frame	ENST00000539951	ENST00000548324		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
Frame-shit	ENST00000537073	ENST00000548058		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
Frame-shit	ENST00000537073	ENST00000261206		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
Frame-shit	ENST00000537073	ENST00000548324		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
5UTR-3CDS	ENST00000543940	ENST00000548058		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
5UTR-3CDS	ENST00000543940	ENST00000261206		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
5UTR-3CDS	ENST00000543940	ENST00000548324		TCGA	RV	STAD	TCGA-BR-4366-01A	EIF2B1	chr12	124116892	-	ACSS3	chr12	81627128	+
intron-5UTR	ENST00000442101	ENST00000360631		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-5UTR	ENST00000442101	ENST00000255448		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-5UTR	ENST00000442101	ENST00000379892		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-intron	ENST00000442101	ENST00000379893		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-intron	ENST00000442101	ENST00000460982		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-5UTR	ENST00000498824	ENST00000360631		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-5UTR	ENST00000498824	ENST00000255448		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-5UTR	ENST00000498824	ENST00000379892		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-intron	ENST00000498824	ENST00000379893		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
intron-intron	ENST00000498824	ENST00000460982		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
5UTR-5UTR	ENST00000239882	ENST00000360631		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
5UTR-5UTR	ENST00000239882	ENST00000255448		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
5UTR-5UTR	ENST00000239882	ENST00000379892		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
5UTR-intron	ENST00000239882	ENST00000379893		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
5UTR-intron	ENST00000239882	ENST00000460982		TCGA	RV	STAD	TCGA-D7-8576-01A	ELF1	chr13	41593364	-	DCLK1	chr13	36700293	-
Frame-shit	ENST00000269216	ENST00000420980		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000269216	ENST00000412732		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000269216	ENST00000416611		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000269216	ENST00000414789		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000269216	ENST00000355526		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000269216	ENST00000456296		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
Frame-shit	ENST00000581694	ENST00000420980		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000581694	ENST00000412732		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000581694	ENST00000416611		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000581694	ENST00000414789		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000581694	ENST00000355526		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000581694	ENST00000456296		TCGA	RV	STAD	TCGA-HU-8243-01A	GATA6	chr18	19752240	+	DPF1	chr19	38713348	-
intron-3CDS	ENST00000478423	ENST00000608083		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
intron-3CDS	ENST00000478423	ENST00000377855		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
intron-3CDS	ENST00000478423	ENST00000545482		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
intron-3CDS	ENST00000478423	ENST00000361521		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
intron-3CDS	ENST00000478423	ENST00000377842		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
intron-3CDS	ENST00000478423	ENST00000377845		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
intron-intron	ENST00000478423	ENST00000541130		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
Frame-shit	ENST00000378156	ENST00000608083		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
Frame-shit	ENST00000378156	ENST00000377855		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
Frame-shit	ENST00000378156	ENST00000545482		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
Frame-shit	ENST00000378156	ENST00000361521		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
Frame-shit	ENST00000378156	ENST00000377842		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
Frame-shit	ENST00000378156	ENST00000377845		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
5CDS-intron	ENST00000378156	ENST00000541130		TCGA	RV	STAD	TCGA-VQ-A91N-01A	NPHP4	chr1	6038330	-	ACOT7	chr1	6341346	-
In-frame	ENST00000362003	ENST00000355072		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
5CDS-intron	ENST00000362003	ENST00000513806		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
intron-3CDS	ENST00000400151	ENST00000355072		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
intron-intron	ENST00000400151	ENST00000513806		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
intron-3CDS	ENST00000482726	ENST00000355072		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
intron-intron	ENST00000482726	ENST00000513806		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
In-frame	ENST00000470161	ENST00000355072		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
5CDS-intron	ENST00000470161	ENST00000513806		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
In-frame	ENST00000521023	ENST00000355072		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
5CDS-intron	ENST00000521023	ENST00000513806		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
In-frame	ENST00000505655	ENST00000355072		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
5CDS-intron	ENST00000505655	ENST00000513806		TCGA	RV	STAD	TCGA-BR-8484-01A	PCGF3	chr4	738476	+	HTT	chr4	3136128	+
5CDS-intron	ENST00000422945	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000422945	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000422945	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000422945	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000422945	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556068	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556068	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556068	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556068	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556068	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000554442	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000554442	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000554442	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000554442	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000554442	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000328724	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000328724	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000328724	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000328724	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000328724	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000350249	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000350249	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000350249	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000350249	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000350249	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000445439	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000445439	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000445439	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000445439	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000445439	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000334743	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000334743	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000334743	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000334743	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000334743	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000557095	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000557095	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000557095	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000557095	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
5CDS-intron	ENST00000557095	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556260	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556260	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556260	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556260	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556260	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556946	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556946	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556946	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556946	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000556946	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000557714	ENST00000345097		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000557714	ENST00000261302		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000557714	ENST00000557258		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000557714	ENST00000555353		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
intron-intron	ENST00000557714	ENST00000555658		TCGA	RV	STAD	TCGA-IN-AB1X-01A	PPP2R5C	chr14	102323222	+	FOXN3	chr14	89953015	-
In-frame	ENST00000392185	ENST00000414563		TCGA	RV	STAD	TCGA-FP-8631-01A	SNX9	chr6	158318030	+	ZDHHC14	chr6	158014020	+
In-frame	ENST00000392185	ENST00000359775		TCGA	RV	STAD	TCGA-FP-8631-01A	SNX9	chr6	158318030	+	ZDHHC14	chr6	158014020	+
5CDS-3UTR	ENST00000392185	ENST00000341375		TCGA	RV	STAD	TCGA-FP-8631-01A	SNX9	chr6	158318030	+	ZDHHC14	chr6	158014020	+
Frame-shit	ENST00000262013	ENST00000586178		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000262013	ENST00000415868		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000262013	ENST00000376381		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000262013	ENST00000593259		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000505279	ENST00000586178		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000505279	ENST00000415868		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000505279	ENST00000376381		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000505279	ENST00000593259		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000357122	ENST00000586178		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
Frame-shit	ENST00000357122	ENST00000415868		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000357122	ENST00000376381		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-intron	ENST00000357122	ENST00000593259		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000509724	ENST00000586178		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000509724	ENST00000415868		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000509724	ENST00000376381		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000509724	ENST00000593259		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000510283	ENST00000586178		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-3CDS	ENST00000510283	ENST00000415868		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000510283	ENST00000376381		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
intron-intron	ENST00000510283	ENST00000593259		TCGA	RV	STAD	TCGA-CG-4443-01A	SPAG9	chr17	49156945	-	MBTD1	chr17	49258055	-
5CDS-5UTR	ENST00000305364	ENST00000256404		TCGA	RV	STAD	TCGA-VQ-A91N-01A	TRIM35	chr8	27168318	-	PEBP4	chr8	22785233	-
5CDS-5UTR	ENST00000305364	ENST00000521284		TCGA	RV	STAD	TCGA-VQ-A91N-01A	TRIM35	chr8	27168318	-	PEBP4	chr8	22785233	-
5CDS-5UTR	ENST00000521253	ENST00000256404		TCGA	RV	STAD	TCGA-VQ-A91N-01A	TRIM35	chr8	27168318	-	PEBP4	chr8	22785233	-
5CDS-5UTR	ENST00000521253	ENST00000521284		TCGA	RV	STAD	TCGA-VQ-A91N-01A	TRIM35	chr8	27168318	-	PEBP4	chr8	22785233	-
5CDS-5UTR	ENST00000359154	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000359154	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000359154	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000359154	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000359154	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000359154	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000448661	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000448661	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000448661	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000448661	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000448661	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000448661	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000569174	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000569174	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000569174	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000569174	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000569174	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000569174	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000356003	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000356003	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000356003	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000356003	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000356003	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000356003	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
3UTR-5UTR	ENST00000544162	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
3UTR-5UTR	ENST00000544162	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
3UTR-5UTR	ENST00000544162	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
3UTR-5UTR	ENST00000544162	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
3UTR-5UTR	ENST00000544162	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
3UTR-5UTR	ENST00000544162	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000542271	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000542271	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000542271	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000542271	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000542271	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
5CDS-5UTR	ENST00000542271	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-5UTR	ENST00000568684	ENST00000349945		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-5UTR	ENST00000568684	ENST00000432919		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-5UTR	ENST00000568684	ENST00000354436		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-5UTR	ENST00000568684	ENST00000567239		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-5UTR	ENST00000568684	ENST00000393742		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-5UTR	ENST00000568684	ENST00000566899		TCGA	RV	STAD	TCGA-BR-8373-01A	WWP2	chr16	69876023	+	NFAT5	chr16	69660306	+
intron-3CDS	ENST00000419318	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
intron-3CDS	ENST00000419318	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
intron-3CDS	ENST00000419318	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
intron-3CDS	ENST00000419318	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
intron-5UTR	ENST00000419318	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
intron-5UTR	ENST00000419318	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000430385	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000430385	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000430385	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000430385	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
5CDS-5UTR	ENST00000430385	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
5CDS-5UTR	ENST00000430385	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000595766	ENST00000455140		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000595766	ENST00000248070		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000595766	ENST00000535753		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
In-frame	ENST00000595766	ENST00000594975		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
5CDS-5UTR	ENST00000595766	ENST00000602009		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
5CDS-5UTR	ENST00000595766	ENST00000597937		TCGA	RV	STAD	TCGA-CG-4449-01A	ZNF799	chr19	12511882	-	EPS15L1	chr19	16545301	-
Frame-shit	ENST00000281141	ENST00000356940		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
Frame-shit	ENST00000281141	ENST00000535776		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
Frame-shit	ENST00000281141	ENST00000375802		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
5CDS-3UTR	ENST00000281141	ENST00000465772		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
3UTR-3CDS	ENST00000455773	ENST00000356940		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
3UTR-3CDS	ENST00000455773	ENST00000535776		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
3UTR-3CDS	ENST00000455773	ENST00000375802		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
3UTR-3UTR	ENST00000455773	ENST00000465772		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
Frame-shit	ENST00000378900	ENST00000356940		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
Frame-shit	ENST00000378900	ENST00000535776		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
Frame-shit	ENST00000378900	ENST00000375802		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
5CDS-3UTR	ENST00000378900	ENST00000465772		TCGA	RV	STAD	TCGA-BR-4253-01A	CDC123	chr10	12252321	+	RAB18	chr10	27798804	+
Frame-shit	ENST00000585892	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000585892	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
Frame-shit	ENST00000314646	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000314646	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
Frame-shit	ENST00000359692	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000359692	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
Frame-shit	ENST00000389253	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000389253	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
Frame-shit	ENST00000355667	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000355667	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
Frame-shit	ENST00000408974	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000408974	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000591819	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
intron-intron	ENST00000591819	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	RFX1	chr19	14088898	-
Frame-shit	ENST00000329153	ENST00000261681		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
Frame-shit	ENST00000329153	ENST00000555925		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
5CDS-intron	ENST00000329153	ENST00000554911		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
5CDS-intron	ENST00000329153	ENST00000556345		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000417684	ENST00000261681		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000417684	ENST00000555925		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-intron	ENST00000417684	ENST00000554911		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-intron	ENST00000417684	ENST00000556345		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000559832	ENST00000261681		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000559832	ENST00000555925		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-intron	ENST00000559832	ENST00000554911		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-intron	ENST00000559832	ENST00000556345		TCGA	RV	STAD	TCGA-BR-8373-01A	PLEKHH1	chr14	68008710	+	MPP5	chr14	67759228	+
intron-3CDS	ENST00000356415	ENST00000394233		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000356415	ENST00000454898		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000356415	ENST00000536817		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000356415	ENST00000370214		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000356415	ENST00000315713		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000356415	ENST00000484213		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-3CDS	ENST00000436150	ENST00000394233		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-3CDS	ENST00000436150	ENST00000454898		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000436150	ENST00000536817		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000436150	ENST00000370214		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000436150	ENST00000315713		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000436150	ENST00000484213		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-3CDS	ENST00000369709	ENST00000394233		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-3CDS	ENST00000369709	ENST00000454898		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000369709	ENST00000536817		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000369709	ENST00000370214		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000369709	ENST00000315713		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-intron	ENST00000369709	ENST00000484213		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000545460	ENST00000394233		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000545460	ENST00000454898		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000545460	ENST00000536817		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000545460	ENST00000370214		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000545460	ENST00000315713		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000545460	ENST00000484213		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000494982	ENST00000394233		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-3CDS	ENST00000494982	ENST00000454898		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000494982	ENST00000536817		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000494982	ENST00000370214		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000494982	ENST00000315713		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
intron-intron	ENST00000494982	ENST00000484213		TCGA	RV	STAD	TCGA-CD-8532-01A	RAP1A	chr1	112162556	+	ABCD3	chr1	94924163	+
5UTR-5UTR	ENST00000533603	ENST00000525842		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000533603	ENST00000397753		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000533603	ENST00000357899		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-intron	ENST00000533603	ENST00000530205		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000358171	ENST00000525842		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000358171	ENST00000397753		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000358171	ENST00000357899		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-intron	ENST00000358171	ENST00000530205		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000530284	ENST00000525842		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000530284	ENST00000397753		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-5UTR	ENST00000530284	ENST00000357899		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
5UTR-intron	ENST00000530284	ENST00000530205		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-5UTR	ENST00000524558	ENST00000525842		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-5UTR	ENST00000524558	ENST00000397753		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-5UTR	ENST00000524558	ENST00000357899		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-intron	ENST00000524558	ENST00000530205		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-5UTR	ENST00000525876	ENST00000525842		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-5UTR	ENST00000525876	ENST00000397753		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-5UTR	ENST00000525876	ENST00000357899		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
intron-intron	ENST00000525876	ENST00000530205		TCGA	RV	STAD	TCGA-CG-4477-01A	SERPINH1	chr11	75273364	+	ZBTB44	chr11	130131824	-
In-frame	ENST00000236273	ENST00000400301		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
In-frame	ENST00000236273	ENST00000308271		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000236273	ENST00000374732		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000236273	ENST00000529637		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000236273	ENST00000479177		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000236273	ENST00000421625		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
In-frame	ENST00000354361	ENST00000400301		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
In-frame	ENST00000354361	ENST00000308271		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000354361	ENST00000374732		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000354361	ENST00000529637		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000354361	ENST00000479177		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
5CDS-intron	ENST00000354361	ENST00000421625		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-3CDS	ENST00000476231	ENST00000400301		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-3CDS	ENST00000476231	ENST00000308271		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-intron	ENST00000476231	ENST00000374732		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-intron	ENST00000476231	ENST00000529637		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-intron	ENST00000476231	ENST00000479177		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-intron	ENST00000476231	ENST00000421625		TCGA	RV	STAD	TCGA-BR-4201-01A	SYF2	chr1	25553933	-	USP48	chr1	22084276	-
intron-3CDS	ENST00000537855	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000537855	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
In-frame	ENST00000379096	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
5CDS-intron	ENST00000379096	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
In-frame	ENST00000518937	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
5CDS-intron	ENST00000518937	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000519303	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000519303	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000517427	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000517427	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000520527	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000520527	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000448733	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000448733	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000379097	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000379097	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-3CDS	ENST00000523395	ENST00000327835		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
intron-intron	ENST00000523395	ENST00000520336		TCGA	RV	STAD	TCGA-BR-8485-01A	TPD52	chr8	81083660	-	ZNF704	chr8	81555364	-
In-frame	ENST00000229195	ENST00000229179		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000229195	ENST00000378905		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000229195	ENST00000539906		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
5CDS-intron	ENST00000229195	ENST00000401003		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
In-frame	ENST00000418359	ENST00000229179		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000418359	ENST00000378905		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
5CDS-5UTR	ENST00000418359	ENST00000539906		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
5CDS-intron	ENST00000418359	ENST00000401003		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
3UTR-3CDS	ENST00000548230	ENST00000229179		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
3UTR-5UTR	ENST00000548230	ENST00000378905		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
3UTR-5UTR	ENST00000548230	ENST00000539906		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
3UTR-intron	ENST00000548230	ENST00000401003		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000551483	ENST00000229179		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000551483	ENST00000378905		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
intron-5UTR	ENST00000551483	ENST00000539906		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
intron-intron	ENST00000551483	ENST00000401003		TCGA	RV	STAD	TCGA-FP-7998-01A	CNOT2	chr12	70724249	+	NUP107	chr12	69082742	+
intron-3CDS	ENST00000508032	ENST00000504487		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
intron-intron	ENST00000508032	ENST00000428116		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
intron-intron	ENST00000508032	ENST00000389609		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
intron-intron	ENST00000508032	ENST00000502801		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
intron-intron	ENST00000508032	ENST00000508236		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
In-frame	ENST00000336812	ENST00000504487		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
5CDS-intron	ENST00000336812	ENST00000428116		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
5CDS-intron	ENST00000336812	ENST00000389609		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
5CDS-intron	ENST00000336812	ENST00000502801		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
5CDS-intron	ENST00000336812	ENST00000508236		TCGA	RV	STAD	TCGA-CG-4449-01A	DHX15	chr4	24550478	-	CCDC149	chr4	24839894	-
Frame-shit	ENST00000455140	ENST00000269701		TCGA	RV	STAD	TCGA-CG-4449-01A	EPS15L1	chr19	16539513	-	AKAP8	chr19	15485446	-
Frame-shit	ENST00000248070	ENST00000269701		TCGA	RV	STAD	TCGA-CG-4449-01A	EPS15L1	chr19	16539513	-	AKAP8	chr19	15485446	-
Frame-shit	ENST00000535753	ENST00000269701		TCGA	RV	STAD	TCGA-CG-4449-01A	EPS15L1	chr19	16539513	-	AKAP8	chr19	15485446	-
Frame-shit	ENST00000594975	ENST00000269701		TCGA	RV	STAD	TCGA-CG-4449-01A	EPS15L1	chr19	16539513	-	AKAP8	chr19	15485446	-
Frame-shit	ENST00000602009	ENST00000269701		TCGA	RV	STAD	TCGA-CG-4449-01A	EPS15L1	chr19	16539513	-	AKAP8	chr19	15485446	-
Frame-shit	ENST00000597937	ENST00000269701		TCGA	RV	STAD	TCGA-CG-4449-01A	EPS15L1	chr19	16539513	-	AKAP8	chr19	15485446	-
In-frame	ENST00000545951	ENST00000290974		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000545951	ENST00000511071		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545951	ENST00000515312		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545951	ENST00000515169		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545951	ENST00000509171		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000545951	ENST00000503000		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000545951	ENST00000508471		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000545951	ENST00000505421		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000382839	ENST00000290974		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000382839	ENST00000511071		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000382839	ENST00000515312		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000382839	ENST00000515169		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000382839	ENST00000509171		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000382839	ENST00000503000		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000382839	ENST00000508471		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000382839	ENST00000505421		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000324666	ENST00000290974		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000324666	ENST00000511071		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000324666	ENST00000515312		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000324666	ENST00000515169		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000324666	ENST00000509171		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000324666	ENST00000503000		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000324666	ENST00000508471		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000324666	ENST00000505421		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000502458	ENST00000290974		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000502458	ENST00000511071		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000502458	ENST00000515312		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000502458	ENST00000515169		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000502458	ENST00000509171		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000502458	ENST00000503000		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000502458	ENST00000508471		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000502458	ENST00000505421		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000505311	ENST00000290974		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000505311	ENST00000511071		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000505311	ENST00000515312		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000505311	ENST00000515169		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000505311	ENST00000509171		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-5UTR	ENST00000505311	ENST00000503000		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000505311	ENST00000508471		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
5CDS-intron	ENST00000505311	ENST00000505421		TCGA	RV	STAD	TCGA-BR-8060-01A	FAM193A	chr4	2665015	+	ZFYVE28	chr4	2343342	-
In-frame	ENST00000490882	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000490882	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
In-frame	ENST00000429972	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000429972	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
In-frame	ENST00000295956	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000295956	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
In-frame	ENST00000358537	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000358537	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
3UTR-3CDS	ENST00000357272	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
3UTR-5UTR	ENST00000357272	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
In-frame	ENST00000348383	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000348383	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
In-frame	ENST00000493452	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000493452	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
In-frame	ENST00000419752	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
5CDS-5UTR	ENST00000419752	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
3UTR-3CDS	ENST00000484981	ENST00000264926		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
3UTR-5UTR	ENST00000484981	ENST00000495087		TCGA	RV	STAD	TCGA-KB-A93J-01A	FLNB	chr3	58155520	+	RAD18	chr3	8990254	-
Frame-shit	ENST00000256216	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000256216	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000256216	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000256216	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000256216	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000256216	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000515320	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000515320	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000515320	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000515320	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000515320	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000515320	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000510025	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000510025	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000510025	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000510025	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000510025	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000510025	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000504811	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000504811	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000414835	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000414835	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000414835	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000414835	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000414835	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000414835	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000513628	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000513628	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000513628	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000513628	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000513628	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000513628	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000509514	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000509514	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000509514	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000509514	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
Frame-shit	ENST00000509514	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
5CDS-3UTR	ENST00000509514	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
3UTR-3CDS	ENST00000522415	ENST00000274456		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
3UTR-3CDS	ENST00000522415	ENST00000513374		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
3UTR-3CDS	ENST00000522415	ENST00000504771		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
3UTR-3CDS	ENST00000522415	ENST00000503646		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
3UTR-3CDS	ENST00000522415	ENST00000504642		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
3UTR-3UTR	ENST00000522415	ENST00000415806		TCGA	RV	STAD	TCGA-CD-A4MH-01A	HSD17B4	chr5	118850741	+	TNFAIP8	chr5	118728511	+
In-frame	ENST00000276282	ENST00000520356		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
In-frame	ENST00000276282	ENST00000520727		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
In-frame	ENST00000276282	ENST00000429442		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
In-frame	ENST00000276282	ENST00000377838		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
In-frame	ENST00000276282	ENST00000520214		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
In-frame	ENST00000276282	ENST00000523399		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
5CDS-5UTR	ENST00000276282	ENST00000517307		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-3CDS	ENST00000520091	ENST00000520356		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-3CDS	ENST00000520091	ENST00000520727		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-3CDS	ENST00000520091	ENST00000429442		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-3CDS	ENST00000520091	ENST00000377838		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-3CDS	ENST00000520091	ENST00000520214		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-3CDS	ENST00000520091	ENST00000523399		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
intron-5UTR	ENST00000520091	ENST00000517307		TCGA	RV	STAD	TCGA-HF-7132-01A	MFHAS1	chr8	8747571	-	ZFAT	chr8	135545215	-
5UTR-3CDS	ENST00000383740	ENST00000397035		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-3CDS	ENST00000383740	ENST00000397041		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-3CDS	ENST00000383740	ENST00000309890		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-5UTR	ENST00000383740	ENST00000397039		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-5UTR	ENST00000383740	ENST00000359983		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-5UTR	ENST00000383740	ENST00000352011		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-5UTR	ENST00000383740	ENST00000397043		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
In-frame	ENST00000292309	ENST00000397035		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
In-frame	ENST00000292309	ENST00000397041		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
In-frame	ENST00000292309	ENST00000309890		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000292309	ENST00000397039		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000292309	ENST00000359983		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000292309	ENST00000352011		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000292309	ENST00000397043		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
In-frame	ENST00000450053	ENST00000397035		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
In-frame	ENST00000450053	ENST00000397041		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
In-frame	ENST00000450053	ENST00000309890		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000450053	ENST00000397039		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000450053	ENST00000359983		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000450053	ENST00000352011		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5CDS-5UTR	ENST00000450053	ENST00000397043		TCGA	RV	STAD	TCGA-BR-7901-01A	NBEAL2	chr3	47021402	+	ATP2A3	chr17	3848442	-
5UTR-3CDS	ENST00000409895	ENST00000272286		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	ABCG8	chr2	44102285	+
5UTR-3CDS	ENST00000409432	ENST00000272286		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	ABCG8	chr2	44102285	+
5UTR-3CDS	ENST00000282412	ENST00000272286		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	ABCG8	chr2	44102285	+
5UTR-3CDS	ENST00000378551	ENST00000272286		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	ABCG8	chr2	44102285	+
3UTR-3CDS	ENST00000378540	ENST00000272286		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	ABCG8	chr2	44102285	+
5UTR-3CDS	ENST00000345249	ENST00000272286		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	ABCG8	chr2	44102285	+
Frame-shit	ENST00000409003	ENST00000537875		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000409003	ENST00000309791		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000409003	ENST00000297848		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000409003	ENST00000247781		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
5CDS-3UTR	ENST00000409003	ENST00000432943		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000314727	ENST00000537875		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000314727	ENST00000309791		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000314727	ENST00000297848		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000314727	ENST00000247781		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
5CDS-3UTR	ENST00000314727	ENST00000432943		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
intron-3CDS	ENST00000527515	ENST00000537875		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
intron-3CDS	ENST00000527515	ENST00000309791		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
intron-3CDS	ENST00000527515	ENST00000297848		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
intron-3CDS	ENST00000527515	ENST00000247781		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
intron-3UTR	ENST00000527515	ENST00000432943		TCGA	RV	STAD	TCGA-CG-4301-01A	SAMD12	chr8	119634043	-	COL14A1	chr8	121209030	+
Frame-shit	ENST00000435962	ENST00000267622		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
5CDS-intron	ENST00000435962	ENST00000555105		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
In-frame	ENST00000340892	ENST00000267622		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
5CDS-intron	ENST00000340892	ENST00000555105		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
Frame-shit	ENST00000360594	ENST00000267622		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
5CDS-intron	ENST00000360594	ENST00000555105		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
Frame-shit	ENST00000556018	ENST00000267622		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
5CDS-intron	ENST00000556018	ENST00000555105		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
intron-3CDS	ENST00000555302	ENST00000267622		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
intron-intron	ENST00000555302	ENST00000555105		TCGA	RV	STAD	TCGA-BR-8289-01A	TC2N	chr14	92278656	-	TRIP11	chr14	92474196	-
Frame-shit	ENST00000207870	ENST00000452631		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
Frame-shit	ENST00000207870	ENST00000346219		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
Frame-shit	ENST00000207870	ENST00000308059		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
5CDS-intron	ENST00000207870	ENST00000469151		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
Frame-shit	ENST00000542835	ENST00000452631		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
Frame-shit	ENST00000542835	ENST00000346219		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
Frame-shit	ENST00000542835	ENST00000308059		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
5CDS-intron	ENST00000542835	ENST00000469151		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
intron-3CDS	ENST00000427323	ENST00000452631		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
intron-3CDS	ENST00000427323	ENST00000346219		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
intron-3CDS	ENST00000427323	ENST00000308059		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
intron-intron	ENST00000427323	ENST00000469151		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
3UTR-3CDS	ENST00000472721	ENST00000452631		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
3UTR-3CDS	ENST00000472721	ENST00000346219		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
3UTR-3CDS	ENST00000472721	ENST00000308059		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
3UTR-intron	ENST00000472721	ENST00000469151		TCGA	RV	STAD	TCGA-BR-4366-01A	XYLB	chr3	38420833	+	DLEC1	chr3	38149075	+
5CDS-intron	ENST00000541908	ENST00000309364		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000359180		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000317589		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000355397		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000429027		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000539256		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000299275		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000538714		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000543806		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000424268		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000540972		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000541908	ENST00000510738		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000309364		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000359180		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000317589		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000355397		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000429027		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000539256		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000299275		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000538714		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000543806		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000424268		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000540972		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000398864	ENST00000510738		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000309364		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000359180		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000317589		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000355397		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000429027		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000539256		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000299275		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000538714		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000543806		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000424268		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000540972		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000266508	ENST00000510738		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000309364		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000359180		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000317589		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000355397		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000429027		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000539256		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000299275		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000538714		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000543806		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000424268		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000540972		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
5CDS-intron	ENST00000360995	ENST00000510738		TCGA	RV	STAD	TCGA-CD-8526-01A	AEBP2	chr12	19615651	+	PLEKHA5	chr12	19473496	+
Frame-shit	ENST00000396432	ENST00000376510		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGAP21	chr10	25010766	-	MSRB2	chr10	23399171	+
5CDS-intron	ENST00000396432	ENST00000468633		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGAP21	chr10	25010766	-	MSRB2	chr10	23399171	+
intron-3CDS	ENST00000320481	ENST00000376510		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGAP21	chr10	25010766	-	MSRB2	chr10	23399171	+
intron-intron	ENST00000320481	ENST00000468633		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGAP21	chr10	25010766	-	MSRB2	chr10	23399171	+
intron-3CDS	ENST00000493154	ENST00000376510		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGAP21	chr10	25010766	-	MSRB2	chr10	23399171	+
intron-intron	ENST00000493154	ENST00000468633		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ARHGAP21	chr10	25010766	-	MSRB2	chr10	23399171	+
In-frame	ENST00000381668	ENST00000303538		TCGA	RV	STAD	TCGA-CD-8536-01A	ATP8A1	chr4	42551030	-	PDS5A	chr4	39865079	-
5CDS-intron	ENST00000381668	ENST00000503396		TCGA	RV	STAD	TCGA-CD-8536-01A	ATP8A1	chr4	42551030	-	PDS5A	chr4	39865079	-
In-frame	ENST00000264449	ENST00000303538		TCGA	RV	STAD	TCGA-CD-8536-01A	ATP8A1	chr4	42551030	-	PDS5A	chr4	39865079	-
5CDS-intron	ENST00000264449	ENST00000503396		TCGA	RV	STAD	TCGA-CD-8536-01A	ATP8A1	chr4	42551030	-	PDS5A	chr4	39865079	-
intron-3CDS	ENST00000510289	ENST00000303538		TCGA	RV	STAD	TCGA-CD-8536-01A	ATP8A1	chr4	42551030	-	PDS5A	chr4	39865079	-
intron-intron	ENST00000510289	ENST00000503396		TCGA	RV	STAD	TCGA-CD-8536-01A	ATP8A1	chr4	42551030	-	PDS5A	chr4	39865079	-
In-frame	ENST00000331272	ENST00000370033		TCGA	RV	STAD	TCGA-BR-8289-01A	FBXW4	chr10	103432672	-	C10orf76	chr10	103609649	-
5CDS-intron	ENST00000331272	ENST00000311122		TCGA	RV	STAD	TCGA-BR-8289-01A	FBXW4	chr10	103432672	-	C10orf76	chr10	103609649	-
5CDS-5UTR	ENST00000331272	ENST00000495001		TCGA	RV	STAD	TCGA-BR-8289-01A	FBXW4	chr10	103432672	-	C10orf76	chr10	103609649	-
intron-3CDS	ENST00000470093	ENST00000370033		TCGA	RV	STAD	TCGA-BR-8289-01A	FBXW4	chr10	103432672	-	C10orf76	chr10	103609649	-
intron-intron	ENST00000470093	ENST00000311122		TCGA	RV	STAD	TCGA-BR-8289-01A	FBXW4	chr10	103432672	-	C10orf76	chr10	103609649	-
intron-5UTR	ENST00000470093	ENST00000495001		TCGA	RV	STAD	TCGA-BR-8289-01A	FBXW4	chr10	103432672	-	C10orf76	chr10	103609649	-
5UTR-3CDS	ENST00000374647	ENST00000374566		TCGA	RV	STAD	TCGA-BR-8373-01A	IKBKAP	chr9	111696144	-	EPB41L4B	chr9	112042201	-
5UTR-3CDS	ENST00000374647	ENST00000374557		TCGA	RV	STAD	TCGA-BR-8373-01A	IKBKAP	chr9	111696144	-	EPB41L4B	chr9	112042201	-
5UTR-3CDS	ENST00000537196	ENST00000374566		TCGA	RV	STAD	TCGA-BR-8373-01A	IKBKAP	chr9	111696144	-	EPB41L4B	chr9	112042201	-
5UTR-3CDS	ENST00000537196	ENST00000374557		TCGA	RV	STAD	TCGA-BR-8373-01A	IKBKAP	chr9	111696144	-	EPB41L4B	chr9	112042201	-
intron-3CDS	ENST00000467959	ENST00000374566		TCGA	RV	STAD	TCGA-BR-8373-01A	IKBKAP	chr9	111696144	-	EPB41L4B	chr9	112042201	-
intron-3CDS	ENST00000467959	ENST00000374557		TCGA	RV	STAD	TCGA-BR-8373-01A	IKBKAP	chr9	111696144	-	EPB41L4B	chr9	112042201	-
In-frame	ENST00000298198	ENST00000263671		TCGA	RV	STAD	TCGA-BR-8289-01A	PGM2L1	chr11	74109096	-	CHRDL2	chr11	74424524	-
In-frame	ENST00000298198	ENST00000376332		TCGA	RV	STAD	TCGA-BR-8289-01A	PGM2L1	chr11	74109096	-	CHRDL2	chr11	74424524	-
5CDS-5UTR	ENST00000298198	ENST00000534159		TCGA	RV	STAD	TCGA-BR-8289-01A	PGM2L1	chr11	74109096	-	CHRDL2	chr11	74424524	-
5CDS-5UTR	ENST00000389413	ENST00000405709		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389413	ENST00000331762		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389413	ENST00000452895		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389413	ENST00000415362		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389413	ENST00000447215		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389413	ENST00000437687		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000389413	ENST00000489381		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000389413	ENST00000450877		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000409483	ENST00000405709		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000409483	ENST00000331762		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000409483	ENST00000452895		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000409483	ENST00000415362		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000409483	ENST00000447215		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000409483	ENST00000437687		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000409483	ENST00000489381		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000409483	ENST00000450877		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389416	ENST00000405709		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389416	ENST00000331762		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389416	ENST00000452895		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389416	ENST00000415362		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389416	ENST00000447215		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389416	ENST00000437687		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000389416	ENST00000489381		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000389416	ENST00000450877		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389418	ENST00000405709		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389418	ENST00000331762		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389418	ENST00000452895		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389418	ENST00000415362		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389418	ENST00000447215		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-5UTR	ENST00000389418	ENST00000437687		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000389418	ENST00000489381		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
5CDS-intron	ENST00000389418	ENST00000450877		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000404321	ENST00000405709		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000404321	ENST00000331762		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000404321	ENST00000452895		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000404321	ENST00000415362		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000404321	ENST00000447215		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-5UTR	ENST00000404321	ENST00000437687		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-intron	ENST00000404321	ENST00000489381		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-intron	ENST00000404321	ENST00000450877		TCGA	RV	STAD	TCGA-D7-8579-01A	PTPRN2	chr7	158380250	-	IMMP2L	chr7	111161505	-
intron-3CDS	ENST00000311380	ENST00000302418		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
intron-5UTR	ENST00000311380	ENST00000493889		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-3CDS	ENST00000375250	ENST00000302418		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-5UTR	ENST00000375250	ENST00000493889		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
intron-3CDS	ENST00000492028	ENST00000302418		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
intron-5UTR	ENST00000492028	ENST00000493889		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-3CDS	ENST00000344936	ENST00000302418		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-5UTR	ENST00000344936	ENST00000493889		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-3CDS	ENST00000396144	ENST00000302418		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-5UTR	ENST00000396144	ENST00000493889		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-3CDS	ENST00000375245	ENST00000302418		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
5UTR-5UTR	ENST00000375245	ENST00000493889		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	ARHGAP12	chr10	32217611	-	KIF5B	chr10	32306287	-
In-frame	ENST00000243578	ENST00000221419		TCGA	RV	STAD	TCGA-CG-4477-01A	B9D2	chr19	41863802	-	HNRNPL	chr19	39327420	-
Frame-shit	ENST00000243578	ENST00000600873		TCGA	RV	STAD	TCGA-CG-4477-01A	B9D2	chr19	41863802	-	HNRNPL	chr19	39327420	-
intron-3CDS	ENST00000601597	ENST00000221419		TCGA	RV	STAD	TCGA-CG-4477-01A	B9D2	chr19	41863802	-	HNRNPL	chr19	39327420	-
intron-3CDS	ENST00000601597	ENST00000600873		TCGA	RV	STAD	TCGA-CG-4477-01A	B9D2	chr19	41863802	-	HNRNPL	chr19	39327420	-
Frame-shit	ENST00000380191	ENST00000379959		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
Frame-shit	ENST00000380191	ENST00000379954		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
In-frame	ENST00000380191	ENST00000256876		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
intron-3CDS	ENST00000479928	ENST00000379959		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
intron-3CDS	ENST00000479928	ENST00000379954		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
intron-3CDS	ENST00000479928	ENST00000256876		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
Frame-shit	ENST00000380132	ENST00000379959		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
Frame-shit	ENST00000380132	ENST00000379954		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
In-frame	ENST00000380132	ENST00000256876		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
Frame-shit	ENST00000380181	ENST00000379959		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
Frame-shit	ENST00000380181	ENST00000379954		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
In-frame	ENST00000380181	ENST00000256876		TCGA	RV	STAD	TCGA-BR-8373-01A	GDI2	chr10	5815805	-	IL2RA	chr10	6054859	-
5CDS-intron	ENST00000550697	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000550697	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000550697	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000550697	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000550697	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000550697	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548580	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548580	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548580	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548580	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548580	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548580	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000293422	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000293422	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000293422	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000293422	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000293422	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000293422	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000348108	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000348108	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000348108	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000348108	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000348108	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
3UTR-intron	ENST00000348108	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000549017	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000549017	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000549017	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000549017	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000549017	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000549017	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549566	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549566	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549566	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549566	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549566	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000549566	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000536128	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000536128	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000536128	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000536128	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000536128	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000536128	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000547649	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000547649	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000547649	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000547649	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000547649	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000547649	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000547408	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000547408	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000547408	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000547408	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000547408	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000547408	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551589	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551589	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551589	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551589	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551589	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551589	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548400	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548400	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548400	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548400	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548400	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000548400	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548293	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548293	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548293	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548293	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548293	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000548293	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551954	ENST00000300134		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551954	ENST00000538913		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551954	ENST00000543873		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551954	ENST00000556155		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551954	ENST00000537215		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
intron-intron	ENST00000551954	ENST00000454075		TCGA	RV	STAD	TCGA-BR-8687-01A	MYL6	chr12	56555358	+	STAT6	chr12	57496773	-
In-frame	ENST00000369682	ENST00000369762		TCGA	RV	STAD	TCGA-BR-8361-01A	PLXNA3	chrX	153699981	+	ATP6AP1	chrX	153660176	+
5CDS-3UTR	ENST00000369682	ENST00000484908		TCGA	RV	STAD	TCGA-BR-8361-01A	PLXNA3	chrX	153699981	+	ATP6AP1	chrX	153660176	+
intron-3CDS	ENST00000493546	ENST00000369762		TCGA	RV	STAD	TCGA-BR-8361-01A	PLXNA3	chrX	153699981	+	ATP6AP1	chrX	153660176	+
intron-3UTR	ENST00000493546	ENST00000484908		TCGA	RV	STAD	TCGA-BR-8361-01A	PLXNA3	chrX	153699981	+	ATP6AP1	chrX	153660176	+
3UTR-3CDS	ENST00000418948	ENST00000286190		TCGA	RV	STAD	TCGA-D7-A4YU-01A	SEMA3B	chr3	50308911	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000418948	ENST00000405148		TCGA	RV	STAD	TCGA-D7-A4YU-01A	SEMA3B	chr3	50308911	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000418948	ENST00000392257		TCGA	RV	STAD	TCGA-D7-A4YU-01A	SEMA3B	chr3	50308911	+	ALS2CR12	chr2	202154508	-
3UTR-3CDS	ENST00000418948	ENST00000439709		TCGA	RV	STAD	TCGA-D7-A4YU-01A	SEMA3B	chr3	50308911	+	ALS2CR12	chr2	202154508	-
3UTR-intron	ENST00000418948	ENST00000448967		TCGA	RV	STAD	TCGA-D7-A4YU-01A	SEMA3B	chr3	50308911	+	ALS2CR12	chr2	202154508	-
Frame-shit	ENST00000397517	ENST00000376460		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
Frame-shit	ENST00000397517	ENST00000339416		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
5CDS-intron	ENST00000397517	ENST00000448493		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
5CDS-intron	ENST00000397517	ENST00000442173		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
5CDS-intron	ENST00000397517	ENST00000461998		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
Frame-shit	ENST00000539966	ENST00000376460		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
Frame-shit	ENST00000539966	ENST00000339416		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
5CDS-intron	ENST00000539966	ENST00000448493		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
5CDS-intron	ENST00000539966	ENST00000442173		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
5CDS-intron	ENST00000539966	ENST00000461998		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-3CDS	ENST00000481288	ENST00000376460		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-3CDS	ENST00000481288	ENST00000339416		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-intron	ENST00000481288	ENST00000448493		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-intron	ENST00000481288	ENST00000442173		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-intron	ENST00000481288	ENST00000461998		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-3CDS	ENST00000376547	ENST00000376460		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-3CDS	ENST00000376547	ENST00000339416		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-intron	ENST00000376547	ENST00000448493		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-intron	ENST00000376547	ENST00000442173		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
intron-intron	ENST00000376547	ENST00000461998		TCGA	RV	STAD	TCGA-BR-8297-01A	STK24	chr13	99228999	-	DOCK9	chr13	99449507	-
Frame-shit	ENST00000409257	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
In-frame	ENST00000409257	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
5CDS-3UTR	ENST00000409257	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000589256	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000589256	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3UTR	ENST00000589256	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
Frame-shit	ENST00000588800	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
In-frame	ENST00000588800	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
5CDS-3UTR	ENST00000588800	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000591952	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000591952	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3UTR	ENST00000591952	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
Frame-shit	ENST00000327898	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
In-frame	ENST00000327898	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
5CDS-3UTR	ENST00000327898	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000586731	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000586731	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3UTR	ENST00000586731	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
3UTR-3CDS	ENST00000589664	ENST00000318430		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
3UTR-3CDS	ENST00000589664	ENST00000589691		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
3UTR-3UTR	ENST00000589664	ENST00000591144		TCGA	RV	STAD	TCGA-BR-8361-01A	AFMID	chr17	76198832	+	TMC8	chr17	76136915	+
intron-3CDS	ENST00000298834	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-intron	ENST00000298834	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000426438	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-intron	ENST00000426438	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000314845	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-intron	ENST00000314845	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-3CDS	ENST00000533727	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-intron	ENST00000533727	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-3CDS	ENST00000534300	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-intron	ENST00000534300	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000458649	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-intron	ENST00000458649	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-3CDS	ENST00000528950	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-intron	ENST00000528950	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-3CDS	ENST00000529963	ENST00000241052		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
intron-intron	ENST00000529963	ENST00000534710		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AMBRA1	chr11	46615378	-	CAT	chr11	34470739	+
5UTR-3CDS	ENST00000258418	ENST00000369983		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
5UTR-intron	ENST00000258418	ENST00000476019		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-3CDS	ENST00000410084	ENST00000369983		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-intron	ENST00000410084	ENST00000476019		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-3CDS	ENST00000409788	ENST00000369983		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-intron	ENST00000409788	ENST00000476019		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-3CDS	ENST00000484398	ENST00000369983		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-intron	ENST00000484398	ENST00000476019		TCGA	RV	STAD	TCGA-BR-8485-01A	CAB39	chr2	231577945	+	GBF1	chr10	104125154	+
intron-5UTR	ENST00000511642	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000511642	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000511642	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000511642	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000511642	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000415497	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000415497	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000415497	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000415497	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000415497	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000372988	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000372988	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000372988	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000372988	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000372988	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000510503	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000510503	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000510503	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000510503	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000510503	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000511686	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000511686	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000511686	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000511686	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000511686	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372991	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372991	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372991	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372991	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372991	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372987	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372987	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372987	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372987	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000372987	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000414200	ENST00000541110		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000414200	ENST00000372917		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000414200	ENST00000372922		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000414200	ENST00000340840		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
intron-5UTR	ENST00000414200	ENST00000354325		TCGA	RV	STAD	TCGA-BR-8373-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000263697	ENST00000413658		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000263697	ENST00000424697		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000263697	ENST00000303915		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5CDS-5UTR	ENST00000263697	ENST00000299667		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5UTR-5UTR	ENST00000489277	ENST00000413658		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5UTR-5UTR	ENST00000489277	ENST00000424697		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5UTR-5UTR	ENST00000489277	ENST00000303915		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
5UTR-5UTR	ENST00000489277	ENST00000299667		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	DNAJC8	chr1	28559432	-	ZNF3	chr7	99675056	-
Frame-shit	ENST00000585892	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000585892	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000585892	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000585892	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000585892	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000585892	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000585892	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000585892	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000585892	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000314646	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000314646	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000314646	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000314646	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000314646	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000314646	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000314646	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000314646	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000314646	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000359692	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000359692	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000359692	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000359692	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000359692	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000359692	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000359692	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000359692	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000359692	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000389253	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000389253	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000389253	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000389253	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000389253	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000389253	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000389253	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000389253	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000389253	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000355667	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000355667	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000355667	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000355667	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000355667	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000355667	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000355667	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000355667	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000355667	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000408974	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000408974	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000408974	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000408974	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000408974	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000408974	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000408974	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-5UTR	ENST00000408974	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
5CDS-intron	ENST00000408974	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000591819	ENST00000397661		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000591819	ENST00000592199		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000591819	ENST00000587760		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000591819	ENST00000585575		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-3CDS	ENST00000591819	ENST00000360105		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000591819	ENST00000588228		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000591819	ENST00000587260		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-5UTR	ENST00000591819	ENST00000358552		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
intron-intron	ENST00000591819	ENST00000588680		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	NFIX	chr19	13135835	+
Frame-shit	ENST00000373566	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000373566	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000373566	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000373563	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000373563	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000373563	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409480	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409480	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409480	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409547	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409547	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409547	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409196	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409196	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409196	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409451	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409451	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000409451	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
intron-3CDS	ENST00000482666	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
intron-3CDS	ENST00000482666	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
intron-3CDS	ENST00000482666	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000452341	ENST00000323786		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000452341	ENST00000393612		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
Frame-shit	ENST00000452341	ENST00000564653		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	GIGYF2	chr2	233671367	+	COG4	chr16	70551643	-
In-frame	ENST00000311075	ENST00000263593		TCGA	RV	STAD	TCGA-BR-8687-01A	MUC13	chr3	124624289	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000311075	ENST00000545756		TCGA	RV	STAD	TCGA-BR-8687-01A	MUC13	chr3	124624289	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000311075	ENST00000525730		TCGA	RV	STAD	TCGA-BR-8687-01A	MUC13	chr3	124624289	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000497378	ENST00000263593		TCGA	RV	STAD	TCGA-BR-8687-01A	MUC13	chr3	124624289	-	SIAE	chr11	124543777	-
intron-intron	ENST00000497378	ENST00000545756		TCGA	RV	STAD	TCGA-BR-8687-01A	MUC13	chr3	124624289	-	SIAE	chr11	124543777	-
intron-intron	ENST00000497378	ENST00000525730		TCGA	RV	STAD	TCGA-BR-8687-01A	MUC13	chr3	124624289	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000327367	ENST00000477874		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
5CDS-intron	ENST00000327367	ENST00000319363		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000559092	ENST00000477874		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000559092	ENST00000319363		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000540846	ENST00000477874		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000540846	ENST00000319363		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000439724	ENST00000477874		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000439724	ENST00000319363		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000537194	ENST00000477874		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
intron-intron	ENST00000537194	ENST00000319363		TCGA	RV	STAD	TCGA-CD-A486-01A	SMAD3	chr15	67358698	+	IL17RA	chr22	17577952	+
Frame-shit	ENST00000267814	ENST00000559390		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000560141		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000329464		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000560442		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000558329		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000561043		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000338264		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
5CDS-intron	ENST00000267814	ENST00000558173		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-3CDS	ENST00000558580	ENST00000559390		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000560141		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000329464		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000560442		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000558329		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000561043		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000338264		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000558580	ENST00000558173		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-3CDS	ENST00000559562	ENST00000559390		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000560141		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000329464		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000560442		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000558329		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000561043		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000338264		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
intron-intron	ENST00000559562	ENST00000558173		TCGA	RV	STAD	TCGA-BR-4366-01A	SORD	chr15	45315547	+	TRIM69	chr15	45059429	+
Frame-shit	ENST00000369005	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
Frame-shit	ENST00000369005	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000369005	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000369005	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000369005	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000369005	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000513429	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000513429	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000513429	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000513429	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000513429	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000513429	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000515273	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000515273	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515273	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515273	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515273	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515273	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000515603	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000515603	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515603	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515603	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515603	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000515603	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000453444	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000453444	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000453444	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000453444	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000453444	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000453444	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000358010	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000358010	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000358010	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000358010	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000358010	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000358010	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
Frame-shit	ENST00000334433	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
Frame-shit	ENST00000334433	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000334433	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000334433	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000334433	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
5CDS-intron	ENST00000334433	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000369001	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000369001	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369001	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369001	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369001	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369001	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000369000	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000369000	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369000	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369000	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369000	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369000	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000360561	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000360561	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000360561	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000360561	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000360561	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000360561	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000368999	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000368999	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000368999	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000368999	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000368999	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000368999	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000369004	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000369004	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369004	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369004	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369004	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000369004	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000260733	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-3CDS	ENST00000260733	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000260733	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000260733	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000260733	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
intron-intron	ENST00000260733	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
3UTR-3CDS	ENST00000493951	ENST00000395255		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
3UTR-3CDS	ENST00000493951	ENST00000410046		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
3UTR-intron	ENST00000493951	ENST00000395251		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
3UTR-intron	ENST00000493951	ENST00000395254		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
3UTR-intron	ENST00000493951	ENST00000466727		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
3UTR-intron	ENST00000493951	ENST00000395249		TCGA	RV	STAD	TCGA-BR-8368-01A	TACC2	chr10	123903221	+	ZNF365	chr10	64219500	+
In-frame	ENST00000581396	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000581396	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000581396	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-intron	ENST00000581396	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000581396	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
In-frame	ENST00000379504	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000379504	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000379504	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-intron	ENST00000379504	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000379504	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-3CDS	ENST00000318094	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000318094	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000318094	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-intron	ENST00000318094	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000318094	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-3CDS	ENST00000395739	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000395739	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000395739	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-intron	ENST00000395739	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000395739	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
In-frame	ENST00000535933	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000535933	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000535933	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-intron	ENST00000535933	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-5UTR	ENST00000535933	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-3CDS	ENST00000540946	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000540946	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000540946	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-intron	ENST00000540946	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000540946	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-3CDS	ENST00000542206	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000542206	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000542206	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-intron	ENST00000542206	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000542206	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-3CDS	ENST00000478943	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000478943	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000478943	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-intron	ENST00000478943	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000478943	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-3CDS	ENST00000577517	ENST00000336868		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000577517	ENST00000577098		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000577517	ENST00000575801		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-intron	ENST00000577517	ENST00000538650		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
intron-5UTR	ENST00000577517	ENST00000537628		TCGA	RV	STAD	TCGA-CG-4477-01A	TOM1L2	chr17	17787948	-	NXN	chr17	729318	-
5CDS-intron	ENST00000339859	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-5UTR	ENST00000339859	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000339859	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000408019	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-5UTR	ENST00000408019	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000408019	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000428547	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-5UTR	ENST00000428547	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000428547	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5UTR-intron	ENST00000394811	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5UTR-5UTR	ENST00000394811	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5UTR-intron	ENST00000394811	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
intron-intron	ENST00000497106	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
intron-5UTR	ENST00000497106	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
intron-intron	ENST00000497106	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
intron-intron	ENST00000422491	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
intron-5UTR	ENST00000422491	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
intron-intron	ENST00000422491	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000319786	ENST00000355264		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-5UTR	ENST00000319786	ENST00000372745		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-intron	ENST00000319786	ENST00000487653		TCGA	RV	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898689	-
5CDS-5UTR	ENST00000409558	ENST00000358912		TCGA	RV	STAD	TCGA-BR-8678-01A	VPS54	chr2	64210998	-	PELI1	chr2	64335513	-
5CDS-5UTR	ENST00000409558	ENST00000466177		TCGA	RV	STAD	TCGA-BR-8678-01A	VPS54	chr2	64210998	-	PELI1	chr2	64335513	-
5CDS-5UTR	ENST00000272322	ENST00000358912		TCGA	RV	STAD	TCGA-BR-8678-01A	VPS54	chr2	64210998	-	PELI1	chr2	64335513	-
5CDS-5UTR	ENST00000272322	ENST00000466177		TCGA	RV	STAD	TCGA-BR-8678-01A	VPS54	chr2	64210998	-	PELI1	chr2	64335513	-
intron-5UTR	ENST00000354504	ENST00000358912		TCGA	RV	STAD	TCGA-BR-8678-01A	VPS54	chr2	64210998	-	PELI1	chr2	64335513	-
intron-5UTR	ENST00000354504	ENST00000466177		TCGA	RV	STAD	TCGA-BR-8678-01A	VPS54	chr2	64210998	-	PELI1	chr2	64335513	-
5CDS-5UTR	ENST00000513761	ENST00000335742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000513761	ENST00000261509		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000513761	ENST00000505667		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000513761	ENST00000333488		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000513761	ENST00000512127		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-intron	ENST00000513761	ENST00000507735		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000347613	ENST00000335742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000347613	ENST00000261509		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000347613	ENST00000505667		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000347613	ENST00000333488		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000347613	ENST00000512127		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-intron	ENST00000347613	ENST00000507735		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000360642	ENST00000335742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000360642	ENST00000261509		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000360642	ENST00000505667		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000360642	ENST00000333488		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000360642	ENST00000512127		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-intron	ENST00000360642	ENST00000507735		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000504131	ENST00000335742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000504131	ENST00000261509		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000504131	ENST00000505667		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000504131	ENST00000333488		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000504131	ENST00000512127		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-intron	ENST00000504131	ENST00000507735		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
3UTR-5UTR	ENST00000506924	ENST00000335742		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
3UTR-5UTR	ENST00000506924	ENST00000261509		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
3UTR-5UTR	ENST00000506924	ENST00000505667		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
3UTR-5UTR	ENST00000506924	ENST00000333488		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
3UTR-5UTR	ENST00000506924	ENST00000512127		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
3UTR-intron	ENST00000506924	ENST00000507735		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CLCN3	chr4	170557239	+	PALLD	chr4	169589341	+
5CDS-5UTR	ENST00000439174	ENST00000447733		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000439174	ENST00000449058		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000439174	ENST00000425375		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000439174	ENST00000411850		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000439174	ENST00000436462		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000439174	ENST00000382034		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000541118	ENST00000447733		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000541118	ENST00000449058		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000541118	ENST00000425375		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000541118	ENST00000411850		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000541118	ENST00000436462		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
5CDS-5UTR	ENST00000541118	ENST00000382034		TCGA	RV	STAD	TCGA-KB-A93J-01A	GNA13	chr17	63049620	-	TOM1	chr22	35713870	+
In-frame	ENST00000534064	ENST00000281038		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
In-frame	ENST00000534064	ENST00000528850		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000535943	ENST00000281038		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000535943	ENST00000528850		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000525931	ENST00000281038		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000525931	ENST00000528850		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
In-frame	ENST00000529807	ENST00000281038		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
In-frame	ENST00000529807	ENST00000528850		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000527522	ENST00000281038		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
intron-3CDS	ENST00000527522	ENST00000528850		TCGA	RV	STAD	TCGA-VQ-A928-01A	INTS4	chr11	77690042	-	NARS2	chr11	78154804	-
5CDS-5UTR	ENST00000296181	ENST00000360647		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
5CDS-intron	ENST00000296181	ENST00000468369		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
5CDS-5UTR	ENST00000296181	ENST00000484491		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
5CDS-intron	ENST00000296181	ENST00000544464		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
5CDS-5UTR	ENST00000296181	ENST00000492394		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
5CDS-5UTR	ENST00000296181	ENST00000485866		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
5CDS-intron	ENST00000296181	ENST00000497929		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-5UTR	ENST00000461306	ENST00000360647		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-intron	ENST00000461306	ENST00000468369		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-5UTR	ENST00000461306	ENST00000484491		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-intron	ENST00000461306	ENST00000544464		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-5UTR	ENST00000461306	ENST00000492394		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-5UTR	ENST00000461306	ENST00000485866		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
intron-intron	ENST00000461306	ENST00000497929		TCGA	RV	STAD	TCGA-BR-8373-01A	ITGB5	chr3	124527869	-	ZNF148	chr3	125032500	-
3UTR-intron	ENST00000578646	ENST00000431264		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
3UTR-intron	ENST00000578646	ENST00000424526		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
3UTR-3UTR	ENST00000578646	ENST00000400483		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
3UTR-3UTR	ENST00000578646	ENST00000269218		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
3UTR-3UTR	ENST00000578646	ENST00000580732		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
3UTR-intron	ENST00000578646	ENST00000578368		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-intron	ENST00000261537	ENST00000431264		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-intron	ENST00000261537	ENST00000424526		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-3UTR	ENST00000261537	ENST00000400483		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-3UTR	ENST00000261537	ENST00000269218		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-3UTR	ENST00000261537	ENST00000580732		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-intron	ENST00000261537	ENST00000578368		TCGA	RV	STAD	TCGA-BR-8373-01A	MIB1	chr18	19359646	+	GREB1L	chr18	19088079	+
5CDS-intron	ENST00000545128	ENST00000379882		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000545128	ENST00000379868		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000545128	ENST00000379883		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000545128	ENST00000545044		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000545128	ENST00000542096		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-intron	ENST00000376767	ENST00000379882		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376767	ENST00000379868		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376767	ENST00000379883		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376767	ENST00000545044		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376767	ENST00000542096		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-intron	ENST00000376752	ENST00000379882		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376752	ENST00000379868		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376752	ENST00000379883		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376752	ENST00000545044		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
5CDS-5UTR	ENST00000376752	ENST00000542096		TCGA	RV	STAD	TCGA-RD-A7BT-01A	PCSK5	chr9	78682959	+	DDX58	chr9	32500937	-
intron-3CDS	ENST00000429989	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000429989	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000481124	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000481124	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000372164	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000372164	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
5UTR-3CDS	ENST00000372158	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
5UTR-5UTR	ENST00000372158	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000341863	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000341863	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
5UTR-3CDS	ENST00000372156	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
5UTR-5UTR	ENST00000372156	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-3CDS	ENST00000265450	ENST00000371804		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
intron-5UTR	ENST00000265450	ENST00000546318		TCGA	RV	STAD	TCGA-D7-A6EZ-01A	TSPAN14	chr10	82228443	+	IFIT1	chr10	91162038	+
Frame-shit	ENST00000398571	ENST00000394440		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
5CDS-intron	ENST00000398571	ENST00000461540		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
5CDS-intron	ENST00000398571	ENST00000544079		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
5CDS-5UTR	ENST00000398571	ENST00000544185		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
5CDS-5UTR	ENST00000398571	ENST00000538252		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
intron-3CDS	ENST00000472689	ENST00000394440		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
intron-intron	ENST00000472689	ENST00000461540		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
intron-intron	ENST00000472689	ENST00000544079		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
intron-5UTR	ENST00000472689	ENST00000544185		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
intron-5UTR	ENST00000472689	ENST00000538252		TCGA	RV	STAD	TCGA-BR-8060-01A	USP34	chr2	61697785	-	CCT4	chr2	62112207	-
In-frame	ENST00000441917	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000441917	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000441917	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000441917	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000441917	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000441917	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000541887	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000541887	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000541887	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000541887	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000541887	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000541887	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000261819	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000261819	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000261819	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000261819	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000261819	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000261819	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000535482	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000535482	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000535482	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000535482	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000535482	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000535482	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000544314	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000544314	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000544314	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000544314	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000544314	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000544314	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000344395	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000344395	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000344395	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000344395	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000344395	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000344395	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000536366	ENST00000377069		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000536366	ENST00000542973		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
In-frame	ENST00000536366	ENST00000377071		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
Frame-shit	ENST00000536366	ENST00000536437		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000536366	ENST00000538046		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000536366	ENST00000543852		TCGA	RV	STAD	TCGA-BR-8373-01A	ANAPC5	chr12	121773336	-	KDM2B	chr12	121868272	-
5CDS-intron	ENST00000357668	ENST00000406091		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000357668	ENST00000262231		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000357668	ENST00000507740		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000357668	ENST00000522174		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000357668	ENST00000436393		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000357668	ENST00000339750		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000518721	ENST00000406091		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000518721	ENST00000262231		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000518721	ENST00000507740		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000518721	ENST00000522174		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000518721	ENST00000436393		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
5CDS-intron	ENST00000518721	ENST00000339750		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
intron-intron	ENST00000520625	ENST00000406091		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
intron-intron	ENST00000520625	ENST00000262231		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
intron-intron	ENST00000520625	ENST00000507740		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
intron-intron	ENST00000520625	ENST00000522174		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
intron-intron	ENST00000520625	ENST00000436393		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
intron-intron	ENST00000520625	ENST00000339750		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ASAP1	chr8	131370263	-	RIMS2	chr8	105105699	+
Frame-shit	ENST00000261692	ENST00000376874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
Frame-shit	ENST00000261692	ENST00000340724		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
Frame-shit	ENST00000261692	ENST00000544468		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000538446	ENST00000376874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000538446	ENST00000340724		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000538446	ENST00000544468		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000535979	ENST00000376874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000535979	ENST00000340724		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000535979	ENST00000544468		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000542174	ENST00000376874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000542174	ENST00000340724		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000542174	ENST00000544468		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000544658	ENST00000376874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000544658	ENST00000340724		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
intron-3CDS	ENST00000544658	ENST00000544468		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CDK2AP1	chr12	123756111	-	RILPL1	chr12	123957229	-
Frame-shit	ENST00000355078	ENST00000378339		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
Frame-shit	ENST00000355078	ENST00000254901		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
5CDS-5UTR	ENST00000355078	ENST00000506158		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
5CDS-3UTR	ENST00000355078	ENST00000464751		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
Frame-shit	ENST00000302763	ENST00000378339		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
Frame-shit	ENST00000302763	ENST00000254901		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
5CDS-5UTR	ENST00000302763	ENST00000506158		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
5CDS-3UTR	ENST00000302763	ENST00000464751		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
Frame-shit	ENST00000518825	ENST00000378339		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
Frame-shit	ENST00000518825	ENST00000254901		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
5CDS-5UTR	ENST00000518825	ENST00000506158		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
5CDS-3UTR	ENST00000518825	ENST00000464751		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-3CDS	ENST00000520400	ENST00000378339		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-3CDS	ENST00000520400	ENST00000254901		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-5UTR	ENST00000520400	ENST00000506158		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-3UTR	ENST00000520400	ENST00000464751		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-3CDS	ENST00000540387	ENST00000378339		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-3CDS	ENST00000540387	ENST00000254901		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-5UTR	ENST00000540387	ENST00000506158		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
intron-3UTR	ENST00000540387	ENST00000464751		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	CTNNA1	chr5	138163407	+	REEP2	chr5	137776705	+
Frame-shit	ENST00000268182	ENST00000379122		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
Frame-shit	ENST00000268182	ENST00000332496		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000560263		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
5CDS-intron	ENST00000268182	ENST00000411539		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000379122		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560738	ENST00000332496		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000560263		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560738	ENST00000411539		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000379122		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-3CDS	ENST00000560020	ENST00000332496		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000560263		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
intron-intron	ENST00000560020	ENST00000411539		TCGA	RV	STAD	TCGA-BR-8373-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90760671	+
In-frame	ENST00000505658	ENST00000285238		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000505658	ENST00000515707		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000505658	ENST00000427699		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000505658	ENST00000510891		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
In-frame	ENST00000393227	ENST00000285238		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000393227	ENST00000515707		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000393227	ENST00000427699		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000393227	ENST00000510891		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
In-frame	ENST00000311571	ENST00000285238		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000311571	ENST00000515707		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000311571	ENST00000427699		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000311571	ENST00000510891		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
In-frame	ENST00000240304	ENST00000285238		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000240304	ENST00000515707		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000240304	ENST00000427699		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5CDS-intron	ENST00000240304	ENST00000510891		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5UTR-3CDS	ENST00000544170	ENST00000285238		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5UTR-intron	ENST00000544170	ENST00000515707		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5UTR-intron	ENST00000544170	ENST00000427699		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
5UTR-intron	ENST00000544170	ENST00000510891		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
intron-3CDS	ENST00000503798	ENST00000285238		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
intron-intron	ENST00000503798	ENST00000515707		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
intron-intron	ENST00000503798	ENST00000427699		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
intron-intron	ENST00000503798	ENST00000510891		TCGA	RV	STAD	TCGA-BR-7901-01A	LUC7L3	chr17	48797192	+	ABCC3	chr17	48744915	+
intron-3CDS	ENST00000338961	ENST00000372954		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000393608		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000541172		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000357558		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000325721		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000538431		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000277465		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000372948		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000338961	ENST00000372938		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-intron	ENST00000338961	ENST00000476727		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000372954		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000393608		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000541172		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000357558		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000325721		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000538431		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000277465		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000372948		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-3CDS	ENST00000277462	ENST00000372938		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
5UTR-intron	ENST00000277462	ENST00000476727		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000372954		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000393608		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000541172		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000357558		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000325721		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000538431		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000277465		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000372948		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-3CDS	ENST00000483625	ENST00000372938		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
intron-intron	ENST00000483625	ENST00000476727		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	PTGES2	chr9	130890527	-	CIZ1	chr9	130940042	-
Frame-shit	ENST00000367771	ENST00000367765		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367771	ENST00000367767		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367771	ENST00000361580		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367771	ENST00000538366		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367771	ENST00000540905		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5CDS-intron	ENST00000367771	ENST00000490550		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367772	ENST00000367765		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367772	ENST00000367767		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367772	ENST00000361580		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367772	ENST00000538366		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
Frame-shit	ENST00000367772	ENST00000540905		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5CDS-intron	ENST00000367772	ENST00000490550		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
In-frame	ENST00000367770	ENST00000367765		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
In-frame	ENST00000367770	ENST00000367767		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
In-frame	ENST00000367770	ENST00000361580		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
In-frame	ENST00000367770	ENST00000538366		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
In-frame	ENST00000367770	ENST00000540905		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5CDS-intron	ENST00000367770	ENST00000490550		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5UTR-3CDS	ENST00000470238	ENST00000367765		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5UTR-3CDS	ENST00000470238	ENST00000367767		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5UTR-3CDS	ENST00000470238	ENST00000361580		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5UTR-3CDS	ENST00000470238	ENST00000538366		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5UTR-3CDS	ENST00000470238	ENST00000540905		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
5UTR-intron	ENST00000470238	ENST00000490550		TCGA	RV	STAD	TCGA-BR-8297-01A	SCYL3	chr1	169857817	-	KIFAP3	chr1	169985765	-
In-frame	ENST00000302538	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000302538	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
Frame-shit	ENST00000544583	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
Frame-shit	ENST00000544583	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000572441	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000572441	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000574437	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000574437	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000291107	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000291107	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000543210	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000543210	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000536794	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
In-frame	ENST00000536794	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000573895	ENST00000517894		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000573895	ENST00000323289		TCGA	RV	STAD	TCGA-VQ-A8DZ-01A	ABR	chr17	953290	-	BAI1	chr8	143599499	+
intron-3CDS	ENST00000533988	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000533988	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000533988	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000533988	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000533988	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000533988	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-intron	ENST00000533988	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-intron	ENST00000533988	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524490	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524490	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524490	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000524490	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000524490	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524490	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000524490	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000524490	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000334736	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000334736	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000334736	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000334736	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000334736	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000334736	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000334736	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000334736	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000343878	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000343878	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000343878	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000343878	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000343878	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000343878	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000343878	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000343878	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000525959	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000525959	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000525959	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000525959	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000525959	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000525959	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-intron	ENST00000525959	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
intron-intron	ENST00000525959	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000533248	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000533248	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000533248	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000533248	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000533248	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000533248	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000533248	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000533248	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525919	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525919	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525919	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000525919	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000525919	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525919	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000525919	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000525919	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524767	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524767	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524767	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000524767	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000524767	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000524767	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000524767	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000524767	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525038	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525038	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525038	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000525038	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000525038	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000525038	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000525038	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000525038	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000529032	ENST00000356136		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000529032	ENST00000528420		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000529032	ENST00000533454		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000529032	ENST00000531818		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
Frame-shit	ENST00000529032	ENST00000532130		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000529032	ENST00000539288		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000529032	ENST00000525872		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
5CDS-intron	ENST00000529032	ENST00000538870		TCGA	RV	STAD	TCGA-BR-8590-01A	C11orf30	chr11	76253411	+	UVRAG	chr11	75851755	+
In-frame	ENST00000371649	ENST00000371579		TCGA	RV	STAD	TCGA-BR-7901-01A	EDF1	chr9	139760633	-	DPP7	chr9	140005402	-
In-frame	ENST00000224073	ENST00000371579		TCGA	RV	STAD	TCGA-BR-7901-01A	EDF1	chr9	139760633	-	DPP7	chr9	140005402	-
In-frame	ENST00000371648	ENST00000371579		TCGA	RV	STAD	TCGA-BR-7901-01A	EDF1	chr9	139760633	-	DPP7	chr9	140005402	-
In-frame	ENST00000307602	ENST00000355904		TCGA	RV	STAD	TCGA-FP-8099-01A	HOOK3	chr8	42798588	+	GTF2E2	chr8	30492640	-
5CDS-intron	ENST00000307602	ENST00000522833		TCGA	RV	STAD	TCGA-FP-8099-01A	HOOK3	chr8	42798588	+	GTF2E2	chr8	30492640	-
intron-3CDS	ENST00000524839	ENST00000355904		TCGA	RV	STAD	TCGA-FP-8099-01A	HOOK3	chr8	42798588	+	GTF2E2	chr8	30492640	-
intron-intron	ENST00000524839	ENST00000522833		TCGA	RV	STAD	TCGA-FP-8099-01A	HOOK3	chr8	42798588	+	GTF2E2	chr8	30492640	-
Frame-shit	ENST00000361566	ENST00000346872		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000394189		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000439167		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000535189		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000377944		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000377945		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000377952		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000377958		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000346243		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000350532		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000351680		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000467757		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000439016		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000361566	ENST00000583368		TCGA	RV	STAD	TCGA-BR-7197-01A	KRT19	chr17	39684080	-	IKZF3	chr17	37944627	-
Frame-shit	ENST00000383737	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000383737	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000383737	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000383737	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000383737	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000383737	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
Frame-shit	ENST00000395734	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000395734	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000395734	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000395734	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000395734	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000395734	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
Frame-shit	ENST00000426837	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000426837	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000426837	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000426837	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000426837	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000426837	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
Frame-shit	ENST00000360240	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000360240	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000360240	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000360240	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000360240	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000360240	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000439356	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000439356	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000439356	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000439356	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000439356	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000439356	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
In-frame	ENST00000264724	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000264724	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000264724	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000264724	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000264724	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000264724	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
In-frame	ENST00000420772	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000420772	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000420772	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000420772	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000420772	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000420772	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
In-frame	ENST00000441748	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000441748	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000441748	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-intron	ENST00000441748	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000441748	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000441748	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000462206	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000462206	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000462206	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000462206	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000462206	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000462206	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-3CDS	ENST00000434267	ENST00000296444		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000434267	ENST00000444115		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000434267	ENST00000426002		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-intron	ENST00000434267	ENST00000465449		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000434267	ENST00000442747		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
intron-5UTR	ENST00000434267	ENST00000443308		TCGA	RV	STAD	TCGA-BR-8590-01A	MAP4	chr3	47898921	-	SHISA5	chr3	48538726	-
5CDS-5UTR	ENST00000371828	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371828	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371828	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371828	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-5UTR	ENST00000371802	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371802	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371802	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371802	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-5UTR	ENST00000371856	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371856	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371856	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371856	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-5UTR	ENST00000347458	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000347458	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000347458	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000347458	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-5UTR	ENST00000340954	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000340954	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000340954	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000340954	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-5UTR	ENST00000371792	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371792	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371792	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000371792	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-5UTR	ENST00000360426	ENST00000374837		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000360426	ENST00000360668		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000360426	ENST00000397709		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5CDS-intron	ENST00000360426	ENST00000476428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	STAU1	chr20	47768119	-	MAP1LC3A	chr20	33137709	+
5UTR-3CDS	ENST00000301665	ENST00000306658		TCGA	RV	STAD	TCGA-CG-4466-01A	TMEM99	chr17	38975460	+	KRT28	chr17	38955251	-
3UTR-3CDS	ENST00000496847	ENST00000306658		TCGA	RV	STAD	TCGA-CG-4466-01A	TMEM99	chr17	38975460	+	KRT28	chr17	38955251	-
5CDS-5UTR	ENST00000373449	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000373449	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000373449	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000373449	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000373449	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000373449	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000548033	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000548033	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000548033	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000548033	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000548033	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000548033	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
intron-5UTR	ENST00000491241	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
intron-5UTR	ENST00000491241	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
intron-5UTR	ENST00000491241	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
intron-intron	ENST00000491241	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
intron-5UTR	ENST00000491241	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
intron-5UTR	ENST00000491241	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000467905	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000467905	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000467905	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000467905	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000467905	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000467905	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000480134	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000480134	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000480134	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000480134	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000480134	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000480134	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000354858	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000354858	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000354858	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000354858	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000354858	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000354858	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000487289	ENST00000355630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000487289	ENST00000396617		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000487289	ENST00000402042		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-intron	ENST00000487289	ENST00000466278		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000487289	ENST00000407029		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
5CDS-5UTR	ENST00000487289	ENST00000402630		TCGA	RV	STAD	TCGA-VQ-A925-01A	AK2	chr1	33502337	-	MKL1	chr22	40859290	-
In-frame	ENST00000318003	ENST00000254323		TCGA	RV	STAD	TCGA-BR-A452-01A	CC2D1A	chr19	14020771	+	ZSWIM4	chr19	13930171	+
In-frame	ENST00000318003	ENST00000440752		TCGA	RV	STAD	TCGA-BR-A452-01A	CC2D1A	chr19	14020771	+	ZSWIM4	chr19	13930171	+
In-frame	ENST00000589606	ENST00000254323		TCGA	RV	STAD	TCGA-BR-A452-01A	CC2D1A	chr19	14020771	+	ZSWIM4	chr19	13930171	+
In-frame	ENST00000589606	ENST00000440752		TCGA	RV	STAD	TCGA-BR-A452-01A	CC2D1A	chr19	14020771	+	ZSWIM4	chr19	13930171	+
Frame-shit	ENST00000552983	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552983	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552983	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552983	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000332896	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000332896	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000552033	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000552033	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000548483	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000548483	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000542893	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000542893	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
Frame-shit	ENST00000541813	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
5CDS-intron	ENST00000541813	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000549982		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000361630		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-3CDS	ENST00000548330	ENST00000552217		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000393128		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000547098		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000548545		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
intron-intron	ENST00000548330	ENST00000552938		TCGA	RV	STAD	TCGA-D7-A6F0-01A	CRADD	chr12	94072848	+	MRPL42	chr12	93894952	+
In-frame	ENST00000370272	ENST00000343253		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
In-frame	ENST00000370272	ENST00000401026		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-3UTR	ENST00000370272	ENST00000338949		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-3UTR	ENST00000370272	ENST00000334652		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-3UTR	ENST00000370272	ENST00000557479		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-intron	ENST00000370272	ENST00000421014		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
In-frame	ENST00000370267	ENST00000343253		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
In-frame	ENST00000370267	ENST00000401026		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-3UTR	ENST00000370267	ENST00000338949		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-3UTR	ENST00000370267	ENST00000334652		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-3UTR	ENST00000370267	ENST00000557479		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5CDS-intron	ENST00000370267	ENST00000421014		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
intron-3CDS	ENST00000481583	ENST00000343253		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
intron-3CDS	ENST00000481583	ENST00000401026		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
intron-3UTR	ENST00000481583	ENST00000338949		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
intron-3UTR	ENST00000481583	ENST00000334652		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
intron-3UTR	ENST00000481583	ENST00000557479		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
intron-intron	ENST00000481583	ENST00000421014		TCGA	RV	STAD	TCGA-VQ-A91X-01A	DR1	chr1	93819628	+	CCDC18	chr1	93730258	+
5UTR-3CDS	ENST00000309156	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309156	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-3CDS	ENST00000309185	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
5UTR-intron	ENST00000309185	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000394211	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394211	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000578702	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578702	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000445327	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445327	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000394209	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394209	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000394204	ENST00000346872		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000394189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000439167		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000535189		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000377944		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000377945		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000377952		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000377958		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000346243		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000350532		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000351680		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000467757		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000439016		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000394204	ENST00000583368		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37894386	+	IKZF3	chr17	37949186	-
Frame-shit	ENST00000356634	ENST00000266025		TCGA	RV	STAD	TCGA-VQ-A8DV-01A	KDM1A	chr1	23346440	+	TMEM115	chr3	50392978	-
Frame-shit	ENST00000400181	ENST00000266025		TCGA	RV	STAD	TCGA-VQ-A8DV-01A	KDM1A	chr1	23346440	+	TMEM115	chr3	50392978	-
Frame-shit	ENST00000542151	ENST00000266025		TCGA	RV	STAD	TCGA-VQ-A8DV-01A	KDM1A	chr1	23346440	+	TMEM115	chr3	50392978	-
In-frame	ENST00000397661	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000397661	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
In-frame	ENST00000592199	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
5CDS-intron	ENST00000592199	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000587760	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000587760	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000585575	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000585575	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000360105	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000360105	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000588228	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000588228	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000587260	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000587260	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000358552	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000358552	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-3CDS	ENST00000588680	ENST00000254325		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
intron-intron	ENST00000588680	ENST00000586913		TCGA	RV	STAD	TCGA-IN-A6RI-01A	NFIX	chr19	13106678	+	RFX1	chr19	14088898	-
In-frame	ENST00000560371	ENST00000335263		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000424963		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000322340		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000560371	ENST00000499851		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000560371	ENST00000342702		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000556807		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000558567		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000299135		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000454394		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000556511		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000560371	ENST00000557186		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000560371	ENST00000545563		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
In-frame	ENST00000347662	ENST00000335263		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000424963		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000322340		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000347662	ENST00000499851		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000347662	ENST00000342702		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000556807		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000558567		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000299135		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000454394		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000556511		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000347662	ENST00000557186		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000347662	ENST00000545563		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
In-frame	ENST00000392745	ENST00000335263		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000424963		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000322340		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000392745	ENST00000499851		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000392745	ENST00000342702		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000556807		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000558567		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000299135		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000454394		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000556511		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000392745	ENST00000557186		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000392745	ENST00000545563		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
In-frame	ENST00000539721	ENST00000335263		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000424963		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000322340		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000539721	ENST00000499851		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000539721	ENST00000342702		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000556807		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000558567		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000299135		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000454394		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000556511		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000539721	ENST00000557186		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000539721	ENST00000545563		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
In-frame	ENST00000351691	ENST00000335263		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000424963		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000322340		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000351691	ENST00000499851		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000351691	ENST00000342702		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000556807		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000558567		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000299135		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000454394		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000556511		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000351691	ENST00000557186		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000351691	ENST00000545563		TCGA	RV	STAD	TCGA-VQ-A8PM-01A	TRAF3	chr14	103338305	+	WDR20	chr14	102661275	+
In-frame	ENST00000609104	ENST00000356352		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000609104	ENST00000357604		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000609104	ENST00000397053		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
5CDS-intron	ENST00000609104	ENST00000460569		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000277575	ENST00000356352		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000277575	ENST00000357604		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000277575	ENST00000397053		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
5CDS-intron	ENST00000277575	ENST00000460569		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000379237	ENST00000356352		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000379237	ENST00000357604		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000379237	ENST00000397053		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
5CDS-intron	ENST00000379237	ENST00000460569		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-3CDS	ENST00000443016	ENST00000356352		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-3CDS	ENST00000443016	ENST00000357604		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-3CDS	ENST00000443016	ENST00000397053		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-intron	ENST00000443016	ENST00000460569		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-3CDS	ENST00000609853	ENST00000356352		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-3CDS	ENST00000609853	ENST00000357604		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-3CDS	ENST00000609853	ENST00000397053		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
intron-intron	ENST00000609853	ENST00000460569		TCGA	RV	STAD	TCGA-BR-4357-01A	USP6NL	chr10	11532831	-	UPF2	chr10	11973781	-
In-frame	ENST00000265742	ENST00000438045		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
In-frame	ENST00000265742	ENST00000248633		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
In-frame	ENST00000265742	ENST00000428214		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
5CDS-intron	ENST00000265742	ENST00000541751		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
3UTR-3CDS	ENST00000486698	ENST00000438045		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
3UTR-3CDS	ENST00000486698	ENST00000248633		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
3UTR-3CDS	ENST00000486698	ENST00000428214		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
3UTR-intron	ENST00000486698	ENST00000541751		TCGA	RV	STAD	TCGA-CG-4438-01A	ANKIB1	chr7	91948826	+	PEX1	chr7	92138725	-
In-frame	ENST00000530675	ENST00000526343		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000530675	ENST00000282441		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000530675	ENST00000537274		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000530675	ENST00000345877		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000530675	ENST00000531439		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000530675	ENST00000524575		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000530675	ENST00000528834		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000227758	ENST00000526343		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000227758	ENST00000282441		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000227758	ENST00000537274		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000227758	ENST00000345877		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000227758	ENST00000531439		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000227758	ENST00000524575		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000227758	ENST00000528834		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000532672	ENST00000526343		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000532672	ENST00000282441		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000532672	ENST00000537274		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000532672	ENST00000345877		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000532672	ENST00000531439		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
In-frame	ENST00000532672	ENST00000524575		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
5CDS-intron	ENST00000532672	ENST00000528834		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-3CDS	ENST00000527910	ENST00000526343		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-3CDS	ENST00000527910	ENST00000282441		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-3CDS	ENST00000527910	ENST00000537274		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-3CDS	ENST00000527910	ENST00000345877		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-3CDS	ENST00000527910	ENST00000531439		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-3CDS	ENST00000527910	ENST00000524575		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
3UTR-intron	ENST00000527910	ENST00000528834		TCGA	RV	STAD	TCGA-CG-4443-01A	BIRC2	chr11	102221674	+	YAP1	chr11	102033187	+
5UTR-3CDS	ENST00000377022	ENST00000361445		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
5UTR-intron	ENST00000377022	ENST00000376838		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
5UTR-intron	ENST00000377022	ENST00000495435		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
5UTR-3CDS	ENST00000344008	ENST00000361445		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
5UTR-intron	ENST00000344008	ENST00000376838		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
5UTR-intron	ENST00000344008	ENST00000495435		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
intron-3CDS	ENST00000478728	ENST00000361445		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
intron-intron	ENST00000478728	ENST00000376838		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
intron-intron	ENST00000478728	ENST00000495435		TCGA	RV	STAD	TCGA-BR-8590-01A	CASZ1	chr1	10765549	-	MTOR	chr1	11288975	-
Frame-shit	ENST00000313486	ENST00000167462		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000313486	ENST00000375227		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000313486	ENST00000392550		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000313486	ENST00000578363		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000313486	ENST00000577200		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
Frame-shit	ENST00000539476	ENST00000167462		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000539476	ENST00000375227		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000539476	ENST00000392550		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000539476	ENST00000578363		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
5CDS-intron	ENST00000539476	ENST00000577200		TCGA	RV	STAD	TCGA-FP-8631-01A	PITPNA	chr17	1451590	-	LLGL2	chr17	73564557	+
Frame-shit	ENST00000253925	ENST00000355303		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
Frame-shit	ENST00000253925	ENST00000398543		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
Frame-shit	ENST00000253925	ENST00000538023		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-intron	ENST00000253925	ENST00000316296		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-intron	ENST00000253925	ENST00000530676		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-intron	ENST00000253925	ENST00000531349		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-3UTR	ENST00000253925	ENST00000525494		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
Frame-shit	ENST00000389547	ENST00000355303		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
Frame-shit	ENST00000389547	ENST00000398543		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
Frame-shit	ENST00000389547	ENST00000538023		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-intron	ENST00000389547	ENST00000316296		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-intron	ENST00000389547	ENST00000530676		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-intron	ENST00000389547	ENST00000531349		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
5CDS-3UTR	ENST00000389547	ENST00000525494		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-3CDS	ENST00000530548	ENST00000355303		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-3CDS	ENST00000530548	ENST00000398543		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-3CDS	ENST00000530548	ENST00000538023		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-intron	ENST00000530548	ENST00000316296		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-intron	ENST00000530548	ENST00000530676		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-intron	ENST00000530548	ENST00000531349		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
intron-3UTR	ENST00000530548	ENST00000525494		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70016993	+
In-frame	ENST00000315872	ENST00000281419		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
In-frame	ENST00000315872	ENST00000315273		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
5CDS-intron	ENST00000315872	ENST00000491413		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
intron-3CDS	ENST00000462366	ENST00000281419		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
intron-3CDS	ENST00000462366	ENST00000315273		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
intron-intron	ENST00000462366	ENST00000491413		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
Frame-shit	ENST00000401753	ENST00000281419		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
Frame-shit	ENST00000401753	ENST00000315273		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
5CDS-intron	ENST00000401753	ENST00000491413		TCGA	RV	STAD	TCGA-HU-A4GU-01A	ROCK2	chr2	11338617	-	ASAP2	chr2	9419446	+
Frame-shit	ENST00000557636	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
intron-3CDS	ENST00000286650	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
Frame-shit	ENST00000298832	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
Frame-shit	ENST00000556893	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
Frame-shit	ENST00000554510	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
intron-3CDS	ENST00000556977	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
intron-3CDS	ENST00000555422	ENST00000266126		TCGA	RV	STAD	TCGA-IN-A6RS-01A	TTLL5	chr14	76286504	+	EIF2B2	chr14	75474425	+
In-frame	ENST00000356136	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
In-frame	ENST00000356136	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
In-frame	ENST00000356136	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
5CDS-intron	ENST00000356136	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000528420	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000528420	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000528420	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000528420	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000533454	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000533454	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000533454	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000533454	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000531818	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000531818	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000531818	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000531818	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000532130	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000532130	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000532130	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000532130	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000539288	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000539288	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000539288	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000539288	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000525872	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000525872	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000525872	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000525872	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000538870	ENST00000304771		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000538870	ENST00000526740		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-3CDS	ENST00000538870	ENST00000434603		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
intron-intron	ENST00000538870	ENST00000526689		TCGA	RV	STAD	TCGA-RD-A8N4-01A	UVRAG	chr11	75526569	+	MAP6	chr11	75317049	-
Frame-shit	ENST00000415430	ENST00000262843		TCGA	RV	STAD	TCGA-VQ-A91K-01A	VSIG1	chrX	107301431	+	MID2	chrX	107159232	+
Frame-shit	ENST00000415430	ENST00000443968		TCGA	RV	STAD	TCGA-VQ-A91K-01A	VSIG1	chrX	107301431	+	MID2	chrX	107159232	+
Frame-shit	ENST00000217957	ENST00000262843		TCGA	RV	STAD	TCGA-VQ-A91K-01A	VSIG1	chrX	107301431	+	MID2	chrX	107159232	+
Frame-shit	ENST00000217957	ENST00000443968		TCGA	RV	STAD	TCGA-VQ-A91K-01A	VSIG1	chrX	107301431	+	MID2	chrX	107159232	+
intron-3CDS	ENST00000485533	ENST00000262843		TCGA	RV	STAD	TCGA-VQ-A91K-01A	VSIG1	chrX	107301431	+	MID2	chrX	107159232	+
intron-3CDS	ENST00000485533	ENST00000443968		TCGA	RV	STAD	TCGA-VQ-A91K-01A	VSIG1	chrX	107301431	+	MID2	chrX	107159232	+
intron-3CDS	ENST00000560302	ENST00000189978		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
intron-3CDS	ENST00000560302	ENST00000374448		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
intron-3CDS	ENST00000560302	ENST00000416899		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
intron-intron	ENST00000560302	ENST00000374440		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
intron-intron	ENST00000560302	ENST00000374439		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
intron-intron	ENST00000560302	ENST00000374438		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000394518	ENST00000189978		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000394518	ENST00000374448		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000394518	ENST00000416899		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000394518	ENST00000374440		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000394518	ENST00000374439		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000394518	ENST00000374438		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000361243	ENST00000189978		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000361243	ENST00000374448		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000361243	ENST00000416899		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000361243	ENST00000374440		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000361243	ENST00000374439		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000361243	ENST00000374438		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
3UTR-3CDS	ENST00000560579	ENST00000189978		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
3UTR-3CDS	ENST00000560579	ENST00000374448		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
3UTR-3CDS	ENST00000560579	ENST00000416899		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
3UTR-intron	ENST00000560579	ENST00000374440		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
3UTR-intron	ENST00000560579	ENST00000374439		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
3UTR-intron	ENST00000560579	ENST00000374438		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000394510	ENST00000189978		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000394510	ENST00000374448		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000394510	ENST00000416899		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000394510	ENST00000374440		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000394510	ENST00000374439		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
5CDS-intron	ENST00000394510	ENST00000374438		TCGA	RV	STAD	TCGA-R5-A805-01A	AKAP13	chr15	86228104	+	MUSK	chr9	113509921	+
In-frame	ENST00000376088	ENST00000376150		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	CLCN5	chrX	49689924	+	PAGE1	chrX	49455977	-
In-frame	ENST00000376091	ENST00000376150		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	CLCN5	chrX	49689924	+	PAGE1	chrX	49455977	-
In-frame	ENST00000482218	ENST00000376150		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	CLCN5	chrX	49689924	+	PAGE1	chrX	49455977	-
intron-3CDS	ENST00000376108	ENST00000376150		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	CLCN5	chrX	49689924	+	PAGE1	chrX	49455977	-
intron-3CDS	ENST00000307367	ENST00000376150		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	CLCN5	chrX	49689924	+	PAGE1	chrX	49455977	-
5UTR-3CDS	ENST00000476510	ENST00000372236		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
5UTR-3CDS	ENST00000476510	ENST00000535400		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
5UTR-3CDS	ENST00000476510	ENST00000372226		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
In-frame	ENST00000307126	ENST00000372236		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
In-frame	ENST00000307126	ENST00000535400		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
In-frame	ENST00000307126	ENST00000372226		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
Frame-shit	ENST00000307114	ENST00000372236		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
Frame-shit	ENST00000307114	ENST00000535400		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
Frame-shit	ENST00000307114	ENST00000372226		TCGA	RV	STAD	TCGA-BR-8486-01A	GTPBP2	chr6	43592247	-	POLH	chr6	43571629	+
In-frame	ENST00000300952	ENST00000539243		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000300952	ENST00000313093		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000300952	ENST00000536472		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000300952	ENST00000590214		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000300952	ENST00000586866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000300952	ENST00000543365		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5CDS-intron	ENST00000300952	ENST00000592335		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5CDS-intron	ENST00000300952	ENST00000590577		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5CDS-intron	ENST00000300952	ENST00000591169		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000591446	ENST00000539243		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000591446	ENST00000313093		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000591446	ENST00000536472		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000591446	ENST00000590214		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000591446	ENST00000586866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
In-frame	ENST00000591446	ENST00000543365		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5CDS-intron	ENST00000591446	ENST00000592335		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5CDS-intron	ENST00000591446	ENST00000590577		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5CDS-intron	ENST00000591446	ENST00000591169		TCGA	RV	STAD	TCGA-BR-A4QI-01A	MIDN	chr19	1251900	+	HMHA1	chr19	1079702	+
5UTR-3CDS	ENST00000409895	ENST00000409907		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000409895	ENST00000309507		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000409895	ENST00000431676		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-intron	ENST00000409895	ENST00000465621		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-3CDS	ENST00000409432	ENST00000409907		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000409432	ENST00000309507		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000409432	ENST00000431676		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-intron	ENST00000409432	ENST00000465621		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-3CDS	ENST00000282412	ENST00000409907		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000282412	ENST00000309507		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000282412	ENST00000431676		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-intron	ENST00000282412	ENST00000465621		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-3CDS	ENST00000378551	ENST00000409907		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000378551	ENST00000309507		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000378551	ENST00000431676		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-intron	ENST00000378551	ENST00000465621		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
3UTR-3CDS	ENST00000378540	ENST00000409907		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
3UTR-5UTR	ENST00000378540	ENST00000309507		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
3UTR-5UTR	ENST00000378540	ENST00000431676		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
3UTR-intron	ENST00000378540	ENST00000465621		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-3CDS	ENST00000345249	ENST00000409907		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000345249	ENST00000309507		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-5UTR	ENST00000345249	ENST00000431676		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
5UTR-intron	ENST00000345249	ENST00000465621		TCGA	RV	STAD	TCGA-BR-8687-01A	PPM1B	chr2	44396413	+	IQCA1	chr2	237406130	-
intron-intron	ENST00000379056	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379056	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379056	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000529421	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000529421	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000529421	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000530705	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000530705	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000530705	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379060	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379060	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379060	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379055	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379055	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000379055	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000309246	ENST00000233057		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000309246	ENST00000395127		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000309246	ENST00000405334		TCGA	RV	STAD	TCGA-BR-8679-01A	TPT1	chr13	45911313	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000266088	ENST00000248975		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SLC5A1	chr22	32446001	+	YWHAH	chr22	32352126	+
Frame-shit	ENST00000266088	ENST00000397492		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SLC5A1	chr22	32446001	+	YWHAH	chr22	32352126	+
5CDS-3UTR	ENST00000266088	ENST00000471374		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SLC5A1	chr22	32446001	+	YWHAH	chr22	32352126	+
intron-3CDS	ENST00000543737	ENST00000248975		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SLC5A1	chr22	32446001	+	YWHAH	chr22	32352126	+
intron-3CDS	ENST00000543737	ENST00000397492		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SLC5A1	chr22	32446001	+	YWHAH	chr22	32352126	+
intron-3UTR	ENST00000543737	ENST00000471374		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SLC5A1	chr22	32446001	+	YWHAH	chr22	32352126	+
5CDS-intron	ENST00000269033	ENST00000401766		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
5CDS-5UTR	ENST00000269033	ENST00000261707		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
5CDS-intron	ENST00000540801	ENST00000401766		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
5CDS-5UTR	ENST00000540801	ENST00000261707		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-intron	ENST00000324677	ENST00000401766		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000324677	ENST00000261707		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-intron	ENST00000582084	ENST00000401766		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000582084	ENST00000261707		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-intron	ENST00000590153	ENST00000401766		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000590153	ENST00000261707		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-intron	ENST00000579954	ENST00000401766		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
intron-5UTR	ENST00000579954	ENST00000261707		TCGA	RV	STAD	TCGA-VQ-A925-01A	SSH2	chr17	28120912	-	SLC6A4	chr17	28549933	-
In-frame	ENST00000394121	ENST00000430627		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000394121	ENST00000447079		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
5CDS-intron	ENST00000394121	ENST00000559545		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
In-frame	ENST00000264637	ENST00000430627		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000264637	ENST00000447079		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
5CDS-intron	ENST00000264637	ENST00000559545		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
In-frame	ENST00000584985	ENST00000430627		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000584985	ENST00000447079		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
5CDS-intron	ENST00000584985	ENST00000559545		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
In-frame	ENST00000450525	ENST00000430627		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000450525	ENST00000447079		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
5CDS-intron	ENST00000450525	ENST00000559545		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
Frame-shit	ENST00000546243	ENST00000430627		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
In-frame	ENST00000546243	ENST00000447079		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
5CDS-intron	ENST00000546243	ENST00000559545		TCGA	RV	STAD	TCGA-BR-8289-01A	THRA	chr17	38245586	+	CDK12	chr17	37686884	+
5UTR-3CDS	ENST00000434735	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000434735	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000434735	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000434735	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000342494	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000342494	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000342494	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000342494	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535089	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535089	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535089	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535089	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000280774	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000280774	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000280774	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000280774	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000536398	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000536398	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000536398	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000536398	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000340074	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000340074	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000340074	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000340074	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000540230	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000540230	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000540230	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000540230	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000537063	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000537063	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000537063	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000537063	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535900	ENST00000418919		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535900	ENST00000258145		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535900	ENST00000543646		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
intron-3CDS	ENST00000535900	ENST00000542058		TCGA	RV	STAD	TCGA-KB-A93J-01A	UBE3B	chr12	109919547	+	GNS	chr12	65122837	-
5UTR-3CDS	ENST00000321599	ENST00000331456		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-3CDS	ENST00000321599	ENST00000469027		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-5UTR	ENST00000321599	ENST00000473863		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-3CDS	ENST00000395238	ENST00000331456		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-3CDS	ENST00000395238	ENST00000469027		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-5UTR	ENST00000395238	ENST00000473863		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-3CDS	ENST00000468463	ENST00000331456		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-3CDS	ENST00000468463	ENST00000469027		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
5UTR-5UTR	ENST00000468463	ENST00000473863		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000460540	ENST00000331456		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000460540	ENST00000469027		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
intron-5UTR	ENST00000460540	ENST00000473863		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000498149	ENST00000331456		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
intron-3CDS	ENST00000498149	ENST00000469027		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
intron-5UTR	ENST00000498149	ENST00000473863		TCGA	RV	STAD	TCGA-BR-8678-01A	IP6K1	chr3	49823787	-	TRAIP	chr3	49885633	-
Frame-shit	ENST00000556611	ENST00000551492		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000346562		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000341321		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000548645		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000356141		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000357798		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000547068		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000556611	ENST00000551008		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000556611	ENST00000550662		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000551492		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000346562		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000341321		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000548645		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000356141		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000357798		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000547068		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000539826	ENST00000551008		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000539826	ENST00000550662		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000551492		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000346562		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000341321		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000548645		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000356141		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000357798		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000547068		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000396582	ENST00000551008		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-intron	ENST00000396582	ENST00000550662		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000551492		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000346562		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000341321		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000548645		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000356141		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000357798		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000547068		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000432921	ENST00000551008		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000432921	ENST00000550662		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000551492		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000346562		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000341321		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000548645		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000356141		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000357798		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000547068		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
Frame-shit	ENST00000345122	ENST00000551008		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
5CDS-intron	ENST00000345122	ENST00000550662		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000551492		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000346562		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000341321		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000548645		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000356141		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000357798		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000547068		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-3CDS	ENST00000433497	ENST00000551008		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
intron-intron	ENST00000433497	ENST00000550662		TCGA	RV	STAD	TCGA-BR-8373-01A	ARHGAP5	chr14	32563592	+	NPAS3	chr14	33836392	+
5UTR-3CDS	ENST00000258761	ENST00000305124		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000258761	ENST00000393780		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000433922	ENST00000305124		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000433922	ENST00000393780		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
3UTR-3CDS	ENST00000432311	ENST00000305124		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
3UTR-3CDS	ENST00000432311	ENST00000393780		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000452975	ENST00000305124		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000452975	ENST00000393780		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000405202	ENST00000305124		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
5UTR-3CDS	ENST00000405202	ENST00000393780		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
intron-3CDS	ENST00000407633	ENST00000305124		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
intron-3CDS	ENST00000407633	ENST00000393780		TCGA	RV	STAD	TCGA-RD-A7C1-01A	BZW2	chr7	16685913	+	GAP43	chr3	115439641	+
Frame-shit	ENST00000588025	ENST00000264824		TCGA	RV	STAD	TCGA-CG-4443-01A	FARSA	chr19	13039156	-	LYL1	chr19	13210548	-
Frame-shit	ENST00000423140	ENST00000264824		TCGA	RV	STAD	TCGA-CG-4443-01A	FARSA	chr19	13039156	-	LYL1	chr19	13210548	-
Frame-shit	ENST00000314606	ENST00000264824		TCGA	RV	STAD	TCGA-CG-4443-01A	FARSA	chr19	13039156	-	LYL1	chr19	13210548	-
5CDS-5UTR	ENST00000371378	ENST00000326956		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371378	ENST00000417664		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371378	ENST00000371320		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371378	ENST00000371319		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371378	ENST00000357475		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000194214	ENST00000326956		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000194214	ENST00000417664		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000194214	ENST00000371320		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000194214	ENST00000371319		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000194214	ENST00000357475		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371377	ENST00000326956		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371377	ENST00000417664		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371377	ENST00000371320		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371377	ENST00000371319		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
5CDS-5UTR	ENST00000371377	ENST00000357475		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000489675	ENST00000326956		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000489675	ENST00000417664		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000489675	ENST00000371320		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000489675	ENST00000371319		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000489675	ENST00000357475		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000371376	ENST00000326956		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000371376	ENST00000417664		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000371376	ENST00000371320		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000371376	ENST00000371319		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
intron-5UTR	ENST00000371376	ENST00000357475		TCGA	RV	STAD	TCGA-BR-4366-01A	HSPB11	chr1	54395712	-	SSBP3	chr1	54708972	-
In-frame	ENST00000538935	ENST00000373566		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000538935	ENST00000373563		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000538935	ENST00000409480		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000538935	ENST00000409547		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000538935	ENST00000409196		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000538935	ENST00000409451		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
5CDS-intron	ENST00000538935	ENST00000482666		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
5CDS-intron	ENST00000538935	ENST00000452341		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000359570	ENST00000373566		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000359570	ENST00000373563		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000359570	ENST00000409480		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000359570	ENST00000409547		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000359570	ENST00000409196		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
In-frame	ENST00000359570	ENST00000409451		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
5CDS-intron	ENST00000359570	ENST00000482666		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
5CDS-intron	ENST00000359570	ENST00000452341		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000450745	ENST00000373566		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000450745	ENST00000373563		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000450745	ENST00000409480		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000450745	ENST00000409547		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000450745	ENST00000409196		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000450745	ENST00000409451		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-intron	ENST00000450745	ENST00000482666		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-intron	ENST00000450745	ENST00000452341		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000455936	ENST00000373566		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000455936	ENST00000373563		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000455936	ENST00000409480		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000455936	ENST00000409547		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000455936	ENST00000409196		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000455936	ENST00000409451		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-intron	ENST00000455936	ENST00000482666		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-intron	ENST00000455936	ENST00000452341		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000474278	ENST00000373566		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000474278	ENST00000373563		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000474278	ENST00000409480		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000474278	ENST00000409547		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000474278	ENST00000409196		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-3CDS	ENST00000474278	ENST00000409451		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-intron	ENST00000474278	ENST00000482666		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
intron-intron	ENST00000474278	ENST00000452341		TCGA	RV	STAD	TCGA-CG-4449-01A	INPP5D	chr2	233944108	+	GIGYF2	chr2	233681581	+
Frame-shit	ENST00000374759	ENST00000331134		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
Frame-shit	ENST00000374759	ENST00000374747		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
Frame-shit	ENST00000374759	ENST00000539314		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000374759	ENST00000572760		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000374759	ENST00000573876		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000374759	ENST00000574344		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000288439	ENST00000331134		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000288439	ENST00000374747		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000288439	ENST00000539314		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-intron	ENST00000288439	ENST00000572760		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-intron	ENST00000288439	ENST00000573876		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-intron	ENST00000288439	ENST00000574344		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000546352	ENST00000331134		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000546352	ENST00000374747		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000546352	ENST00000539314		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-intron	ENST00000546352	ENST00000572760		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-intron	ENST00000546352	ENST00000573876		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
intron-intron	ENST00000546352	ENST00000574344		TCGA	RV	STAD	TCGA-BR-8060-01A	SLC38A10	chr17	79225293	-	NPLOC4	chr17	79539114	-
5CDS-5UTR	ENST00000341084	ENST00000520552		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000341084	ENST00000335659		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000341084	ENST00000519597		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000341084	ENST00000520311		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000341084	ENST00000519316		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-intron	ENST00000341084	ENST00000524319		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000519449	ENST00000520552		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000519449	ENST00000335659		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000519449	ENST00000519597		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000519449	ENST00000520311		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-5UTR	ENST00000519449	ENST00000519316		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-intron	ENST00000519449	ENST00000524319		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000523255	ENST00000520552		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000523255	ENST00000335659		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000523255	ENST00000519597		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000523255	ENST00000520311		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5UTR-5UTR	ENST00000523255	ENST00000519316		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5UTR-intron	ENST00000523255	ENST00000524319		TCGA	RV	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101276899	-	ANKRD46	chr8	101545539	-
5CDS-intron	ENST00000355086	ENST00000450485		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000355086	ENST00000333479		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000355086	ENST00000545065		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000355086	ENST00000537348		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000355086	ENST00000436959		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000355086	ENST00000534995		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000357825	ENST00000450485		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000357825	ENST00000333479		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000357825	ENST00000545065		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000357825	ENST00000537348		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000357825	ENST00000436959		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
5CDS-intron	ENST00000357825	ENST00000534995		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
intron-intron	ENST00000543397	ENST00000450485		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
intron-intron	ENST00000543397	ENST00000333479		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
intron-intron	ENST00000543397	ENST00000545065		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
intron-intron	ENST00000543397	ENST00000537348		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
intron-intron	ENST00000543397	ENST00000436959		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
intron-intron	ENST00000543397	ENST00000534995		TCGA	RV	STAD	TCGA-BR-7959-01A	SRGAP1	chr12	64238663	+	KNTC1	chr12	123075154	+
In-frame	ENST00000409638	ENST00000450993		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409638	ENST00000417849		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409638	ENST00000432688		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000396738	ENST00000450993		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000396738	ENST00000417849		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000396738	ENST00000432688		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409516	ENST00000450993		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409516	ENST00000417849		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409516	ENST00000432688		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409260	ENST00000450993		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409260	ENST00000417849		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000409260	ENST00000432688		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
intron-3CDS	ENST00000486813	ENST00000450993		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
intron-3CDS	ENST00000486813	ENST00000417849		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
intron-3CDS	ENST00000486813	ENST00000432688		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
intron-3CDS	ENST00000409743	ENST00000450993		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
intron-3CDS	ENST00000409743	ENST00000417849		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
intron-3CDS	ENST00000409743	ENST00000432688		TCGA	RV	STAD	TCGA-CG-4443-01A	STK16	chr2	220112479	+	PLCD4	chr2	219496859	+
In-frame	ENST00000534328	ENST00000319006		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
In-frame	ENST00000534328	ENST00000528097		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
5CDS-intron	ENST00000534328	ENST00000532202		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
In-frame	ENST00000332231	ENST00000319006		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
In-frame	ENST00000332231	ENST00000528097		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
5CDS-intron	ENST00000332231	ENST00000532202		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
In-frame	ENST00000448903	ENST00000319006		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
In-frame	ENST00000448903	ENST00000528097		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
5CDS-intron	ENST00000448903	ENST00000532202		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000525891	ENST00000319006		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
intron-3CDS	ENST00000525891	ENST00000528097		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
intron-intron	ENST00000525891	ENST00000532202		TCGA	RV	STAD	TCGA-BR-7901-01A	AP2A2	chr11	926088	+	TALDO1	chr11	755879	+
5CDS-5UTR	ENST00000288602	ENST00000393008		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000288602	ENST00000324787		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000288602	ENST00000472343		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000288602	ENST00000496958		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-5UTR	ENST00000288602	ENST00000469351		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000288602	ENST00000467334		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	BRAF	chr7	140624366	-	MRPS33	chr7	140710460	-
5CDS-intron	ENST00000246535	ENST00000592864		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
5CDS-intron	ENST00000246535	ENST00000360228		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
5CDS-intron	ENST00000246535	ENST00000573710		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
5CDS-intron	ENST00000246535	ENST00000574822		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
intron-intron	ENST00000587065	ENST00000592864		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
intron-intron	ENST00000587065	ENST00000360228		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
intron-intron	ENST00000587065	ENST00000573710		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
intron-intron	ENST00000587065	ENST00000574822		TCGA	RV	STAD	TCGA-MX-A666-01A	PDCD2L	chr19	34904752	+	CACNA1A	chr19	13482593	-
intron-3CDS	ENST00000427662	ENST00000224950		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
intron-3CDS	ENST00000427662	ENST00000369764		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
intron-5UTR	ENST00000427662	ENST00000466828		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000224950		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000369774	ENST00000369764		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000369774	ENST00000466828		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000224950		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000355946	ENST00000369764		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000355946	ENST00000466828		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5UTR-3CDS	ENST00000315994	ENST00000224950		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5UTR-3CDS	ENST00000315994	ENST00000369764		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5UTR-5UTR	ENST00000315994	ENST00000466828		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000540321	ENST00000224950		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000540321	ENST00000369764		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000540321	ENST00000466828		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000538130	ENST00000224950		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000538130	ENST00000369764		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
5CDS-5UTR	ENST00000538130	ENST00000466828		TCGA	RV	STAD	TCGA-VQ-A925-01A	SH3PXD2A	chr10	105365555	-	OBFC1	chr10	105670380	-
Frame-shit	ENST00000357674	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000357674	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000357674	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000314062	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000314062	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000314062	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000346964	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000346964	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000346964	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000419354	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000419354	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000419354	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-3CDS	ENST00000452595	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-intron	ENST00000452595	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-intron	ENST00000452595	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000422288	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000422288	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000422288	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000448528	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000448528	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000448528	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-3CDS	ENST00000443183	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-intron	ENST00000443183	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-intron	ENST00000443183	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000450955	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000450955	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000450955	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
Frame-shit	ENST00000392382	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000392382	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5CDS-intron	ENST00000392382	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-3CDS	ENST00000485409	ENST00000545128		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-intron	ENST00000485409	ENST00000376767		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
intron-intron	ENST00000485409	ENST00000376752		TCGA	RV	STAD	TCGA-BR-8060-01A	DLG1	chr3	196921296	-	PCSK5	chr9	78936338	+
5UTR-3CDS	ENST00000261716	ENST00000301039		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-3CDS	ENST00000261716	ENST00000439862		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-intron	ENST00000261716	ENST00000581289		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-5UTR	ENST00000261716	ENST00000579650		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-3CDS	ENST00000536202	ENST00000301039		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-3CDS	ENST00000536202	ENST00000439862		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-intron	ENST00000536202	ENST00000581289		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5UTR-5UTR	ENST00000536202	ENST00000579650		TCGA	RV	STAD	TCGA-BR-A4QI-01A	TAOK1	chr17	27718042	+	PROCA1	chr17	27031861	-
5CDS-5UTR	ENST00000355540	ENST00000265742		TCGA	RV	STAD	TCGA-BR-8484-01A	TRRAP	chr7	98582667	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000355540	ENST00000486698		TCGA	RV	STAD	TCGA-BR-8484-01A	TRRAP	chr7	98582667	+	ANKIB1	chr7	91924203	+
5CDS-5UTR	ENST00000359863	ENST00000265742		TCGA	RV	STAD	TCGA-BR-8484-01A	TRRAP	chr7	98582667	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000359863	ENST00000486698		TCGA	RV	STAD	TCGA-BR-8484-01A	TRRAP	chr7	98582667	+	ANKIB1	chr7	91924203	+
5CDS-5UTR	ENST00000446306	ENST00000265742		TCGA	RV	STAD	TCGA-BR-8484-01A	TRRAP	chr7	98582667	+	ANKIB1	chr7	91924203	+
5CDS-intron	ENST00000446306	ENST00000486698		TCGA	RV	STAD	TCGA-BR-8484-01A	TRRAP	chr7	98582667	+	ANKIB1	chr7	91924203	+
3UTR-5UTR	ENST00000494757	ENST00000394121		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
3UTR-5UTR	ENST00000494757	ENST00000264637		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
3UTR-5UTR	ENST00000494757	ENST00000584985		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
3UTR-5UTR	ENST00000494757	ENST00000450525		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
3UTR-5UTR	ENST00000494757	ENST00000546243		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000323571	ENST00000394121		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000323571	ENST00000264637		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000323571	ENST00000584985		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000323571	ENST00000450525		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000323571	ENST00000546243		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000585043	ENST00000394121		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000585043	ENST00000264637		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000585043	ENST00000584985		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000585043	ENST00000450525		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000585043	ENST00000546243		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000394103	ENST00000394121		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000394103	ENST00000264637		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000394103	ENST00000584985		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000394103	ENST00000450525		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000394103	ENST00000546243		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000536600	ENST00000394121		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000536600	ENST00000264637		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000536600	ENST00000584985		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000536600	ENST00000450525		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
5UTR-5UTR	ENST00000536600	ENST00000546243		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
intron-5UTR	ENST00000583130	ENST00000394121		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
intron-5UTR	ENST00000583130	ENST00000264637		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
intron-5UTR	ENST00000583130	ENST00000584985		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
intron-5UTR	ENST00000583130	ENST00000450525		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
intron-5UTR	ENST00000583130	ENST00000546243		TCGA	RV	STAD	TCGA-D7-8573-01A	WIPF2	chr17	38375744	+	THRA	chr17	38230445	+
Frame-shit	ENST00000416569	ENST00000307602		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	XKR6	chr8	11058085	-	HOOK3	chr8	42821616	+
5CDS-intron	ENST00000416569	ENST00000524839		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	XKR6	chr8	11058085	-	HOOK3	chr8	42821616	+
intron-3CDS	ENST00000304437	ENST00000307602		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	XKR6	chr8	11058085	-	HOOK3	chr8	42821616	+
intron-intron	ENST00000304437	ENST00000524839		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	XKR6	chr8	11058085	-	HOOK3	chr8	42821616	+
Frame-shit	ENST00000297303	ENST00000307602		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	XKR6	chr8	11058085	-	HOOK3	chr8	42821616	+
5CDS-intron	ENST00000297303	ENST00000524839		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	XKR6	chr8	11058085	-	HOOK3	chr8	42821616	+
5UTR-3CDS	ENST00000381602	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381602	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381602	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381602	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381602	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397962	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397962	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397962	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397962	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397962	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000309776	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000309776	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000309776	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000309776	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000309776	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000509513	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000509513	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000509513	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000509513	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000509513	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397959	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397959	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397959	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000397959	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000397959	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000381591	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000381591	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000381591	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000381591	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000381591	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000403354	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000403354	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000403354	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000403354	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000403354	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381607	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381607	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381607	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381607	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381607	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000402736	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000402736	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000402736	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000402736	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000402736	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000602682	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000602682	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000602682	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000602682	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000602682	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381604	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381604	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381604	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381604	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381604	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381584	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381584	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381584	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000381584	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-intron	ENST00000381584	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000558098	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000558098	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000558098	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
Frame-shit	ENST00000558098	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5CDS-intron	ENST00000558098	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000545619	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000545619	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000545619	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000545619	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000545619	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000535374	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000535374	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000535374	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000535374	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000535374	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000473115	ENST00000414778		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000473115	ENST00000373965		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000473115	ENST00000395438		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-3CDS	ENST00000473115	ENST00000409834		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395440		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395446		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395442		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395445		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000373957		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395432		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395433		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000361849		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000395430		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000320301		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000437009		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000373955		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
intron-intron	ENST00000473115	ENST00000463095		TCGA	RV	STAD	TCGA-BR-7716-01A	ZMYND11	chr10	226068	+	PCDH15	chr10	55849823	-
5UTR-3CDS	ENST00000394752	ENST00000462138		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000394752	ENST00000423525		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000394752	ENST00000461139		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000394752	ENST00000423516		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-5UTR	ENST00000394752	ENST00000296289		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000394750	ENST00000462138		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000394750	ENST00000423525		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-intron	ENST00000394750	ENST00000461139		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-intron	ENST00000394750	ENST00000423516		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-5UTR	ENST00000394750	ENST00000296289		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000358080	ENST00000462138		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000358080	ENST00000423525		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000358080	ENST00000461139		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000358080	ENST00000423516		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-5UTR	ENST00000358080	ENST00000296289		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000296295	ENST00000462138		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-3CDS	ENST00000296295	ENST00000423525		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000296295	ENST00000461139		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-intron	ENST00000296295	ENST00000423516		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5UTR-5UTR	ENST00000296295	ENST00000296289		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000470575	ENST00000462138		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-3CDS	ENST00000470575	ENST00000423525		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-intron	ENST00000470575	ENST00000461139		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-intron	ENST00000470575	ENST00000423516		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
intron-5UTR	ENST00000470575	ENST00000296289		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	SFMBT1	chr3	53079832	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000377707	ENST00000519728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SHB	chr9	37974619	-	LYN	chr8	56854414	+
5CDS-5UTR	ENST00000377707	ENST00000520220		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SHB	chr9	37974619	-	LYN	chr8	56854414	+
5CDS-intron	ENST00000377707	ENST00000420292		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SHB	chr9	37974619	-	LYN	chr8	56854414	+
intron-5UTR	ENST00000377700	ENST00000519728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SHB	chr9	37974619	-	LYN	chr8	56854414	+
intron-5UTR	ENST00000377700	ENST00000520220		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SHB	chr9	37974619	-	LYN	chr8	56854414	+
intron-intron	ENST00000377700	ENST00000420292		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SHB	chr9	37974619	-	LYN	chr8	56854414	+
5UTR-5UTR	ENST00000371471	ENST00000371440		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
5UTR-5UTR	ENST00000371471	ENST00000371435		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
5UTR-5UTR	ENST00000371471	ENST00000395961		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
5UTR-intron	ENST00000371471	ENST00000434986		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
5UTR-intron	ENST00000371471	ENST00000411563		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000302342	ENST00000371440		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000302342	ENST00000371435		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000302342	ENST00000395961		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000302342	ENST00000434986		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000302342	ENST00000411563		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000540425	ENST00000371440		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000540425	ENST00000371435		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-5UTR	ENST00000540425	ENST00000395961		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000540425	ENST00000434986		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
intron-intron	ENST00000540425	ENST00000411563		TCGA	RV	STAD	TCGA-CG-4443-01A	ZNF217	chr20	52210295	-	BCAS1	chr20	52675262	-
5CDS-5UTR	ENST00000398590	ENST00000494118		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000398590	ENST00000281523		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000295900	ENST00000494118		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000295900	ENST00000281523		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000487717	ENST00000494118		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000487717	ENST00000281523		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000538065	ENST00000494118		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000538065	ENST00000281523		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000484332	ENST00000494118		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
5CDS-5UTR	ENST00000484332	ENST00000281523		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
3UTR-5UTR	ENST00000488239	ENST00000494118		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
3UTR-5UTR	ENST00000488239	ENST00000281523		TCGA	RV	STAD	TCGA-R5-A7O7-01A	ATXN7	chr3	63965843	+	ZNF385D	chr3	21478695	-
Frame-shit	ENST00000288207	ENST00000348370		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
Frame-shit	ENST00000288207	ENST00000434298		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
In-frame	ENST00000288207	ENST00000559209		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
Frame-shit	ENST00000288207	ENST00000557998		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
In-frame	ENST00000288207	ENST00000561186		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
5CDS-3UTR	ENST00000288207	ENST00000560080		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
intron-3CDS	ENST00000559622	ENST00000348370		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
intron-3CDS	ENST00000559622	ENST00000434298		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
intron-3CDS	ENST00000559622	ENST00000559209		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
intron-3CDS	ENST00000559622	ENST00000557998		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
intron-3CDS	ENST00000559622	ENST00000561186		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
intron-3UTR	ENST00000559622	ENST00000560080		TCGA	RV	STAD	TCGA-CD-8535-01A	CCNB2	chr15	59409567	+	RNF111	chr15	59386982	+
Frame-shit	ENST00000445193	ENST00000490882		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000445193	ENST00000429972		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000445193	ENST00000295956		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000445193	ENST00000358537		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000445193	ENST00000357272		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000445193	ENST00000348383		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000445193	ENST00000493452		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000445193	ENST00000419752		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000445193	ENST00000484981		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3CDS	ENST00000477305	ENST00000490882		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3CDS	ENST00000477305	ENST00000429972		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3CDS	ENST00000477305	ENST00000295956		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3CDS	ENST00000477305	ENST00000358537		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3UTR	ENST00000477305	ENST00000357272		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3UTR	ENST00000477305	ENST00000348383		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3UTR	ENST00000477305	ENST00000493452		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3UTR	ENST00000477305	ENST00000419752		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
3UTR-3UTR	ENST00000477305	ENST00000484981		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000295959	ENST00000490882		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000295959	ENST00000429972		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000295959	ENST00000295956		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000295959	ENST00000358537		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000295959	ENST00000357272		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000295959	ENST00000348383		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000295959	ENST00000493452		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000295959	ENST00000419752		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000295959	ENST00000484981		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000466547	ENST00000490882		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000466547	ENST00000429972		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000466547	ENST00000295956		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
Frame-shit	ENST00000466547	ENST00000358537		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000466547	ENST00000357272		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000466547	ENST00000348383		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000466547	ENST00000493452		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000466547	ENST00000419752		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
5CDS-3UTR	ENST00000466547	ENST00000484981		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3CDS	ENST00000528153	ENST00000490882		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3CDS	ENST00000528153	ENST00000429972		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3CDS	ENST00000528153	ENST00000295956		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3CDS	ENST00000528153	ENST00000358537		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3UTR	ENST00000528153	ENST00000357272		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3UTR	ENST00000528153	ENST00000348383		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3UTR	ENST00000528153	ENST00000493452		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3UTR	ENST00000528153	ENST00000419752		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
intron-3UTR	ENST00000528153	ENST00000484981		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RPP14	chr3	58296318	+	FLNB	chr3	58154167	+
In-frame	ENST00000356805	ENST00000321765		TCGA	RV	STAD	TCGA-VQ-A922-01A	SPTBN1	chr2	54826380	+	SPAG5	chr17	26920084	-
In-frame	ENST00000333896	ENST00000321765		TCGA	RV	STAD	TCGA-VQ-A922-01A	SPTBN1	chr2	54826380	+	SPAG5	chr17	26920084	-
Frame-shit	ENST00000264833	ENST00000253108		TCGA	RV	STAD	TCGA-CD-8525-01A	OLFM2	chr19	10046980	-	EIF3G	chr19	10226750	-
5CDS-intron	ENST00000264833	ENST00000587168		TCGA	RV	STAD	TCGA-CD-8525-01A	OLFM2	chr19	10046980	-	EIF3G	chr19	10226750	-
intron-3CDS	ENST00000590841	ENST00000253108		TCGA	RV	STAD	TCGA-CD-8525-01A	OLFM2	chr19	10046980	-	EIF3G	chr19	10226750	-
intron-intron	ENST00000590841	ENST00000587168		TCGA	RV	STAD	TCGA-CD-8525-01A	OLFM2	chr19	10046980	-	EIF3G	chr19	10226750	-
In-frame	ENST00000336615	ENST00000318562		TCGA	RV	STAD	TCGA-BR-8485-01A	PNPLA2	chr11	822606	+	EPS8L2	chr11	720062	+
In-frame	ENST00000336615	ENST00000533256		TCGA	RV	STAD	TCGA-BR-8485-01A	PNPLA2	chr11	822606	+	EPS8L2	chr11	720062	+
In-frame	ENST00000336615	ENST00000530636		TCGA	RV	STAD	TCGA-BR-8485-01A	PNPLA2	chr11	822606	+	EPS8L2	chr11	720062	+
In-frame	ENST00000336615	ENST00000526198		TCGA	RV	STAD	TCGA-BR-8485-01A	PNPLA2	chr11	822606	+	EPS8L2	chr11	720062	+
5CDS-intron	ENST00000336615	ENST00000534449		TCGA	RV	STAD	TCGA-BR-8485-01A	PNPLA2	chr11	822606	+	EPS8L2	chr11	720062	+
In-frame	ENST00000348657	ENST00000263245		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
In-frame	ENST00000348657	ENST00000429508		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
In-frame	ENST00000348657	ENST00000437119		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
In-frame	ENST00000252115	ENST00000263245		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
In-frame	ENST00000252115	ENST00000429508		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
In-frame	ENST00000252115	ENST00000437119		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
intron-3CDS	ENST00000339677	ENST00000263245		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
intron-3CDS	ENST00000339677	ENST00000429508		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
intron-3CDS	ENST00000339677	ENST00000437119		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
Frame-shit	ENST00000451060	ENST00000263245		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
Frame-shit	ENST00000451060	ENST00000429508		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
Frame-shit	ENST00000451060	ENST00000437119		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
5UTR-3CDS	ENST00000491021	ENST00000263245		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
5UTR-3CDS	ENST00000491021	ENST00000429508		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
5UTR-3CDS	ENST00000491021	ENST00000437119		TCGA	RV	STAD	TCGA-BR-4357-01A	POLDIP3	chr22	42995704	-	ARFGAP3	chr22	43243638	-
intron-3CDS	ENST00000470422	ENST00000278780		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-5UTR	ENST00000470422	ENST00000483661		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
Frame-shit	ENST00000246043	ENST00000278780		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
5CDS-5UTR	ENST00000246043	ENST00000483661		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
Frame-shit	ENST00000377813	ENST00000278780		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
5CDS-5UTR	ENST00000377813	ENST00000483661		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-3CDS	ENST00000377807	ENST00000278780		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-5UTR	ENST00000377807	ENST00000483661		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-3CDS	ENST00000360807	ENST00000278780		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-5UTR	ENST00000360807	ENST00000483661		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-3CDS	ENST00000455029	ENST00000278780		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
intron-5UTR	ENST00000455029	ENST00000483661		TCGA	RV	STAD	TCGA-BR-8590-01A	RRBP1	chr20	17639241	-	OVOL2	chr20	18005596	-
In-frame	ENST00000360578	ENST00000306320		TCGA	RV	STAD	TCGA-BR-7959-01A	TPPP	chr5	677865	-	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000360578	ENST00000399793		TCGA	RV	STAD	TCGA-BR-7959-01A	TPPP	chr5	677865	-	FAM134B	chr5	16572211	-
5CDS-intron	ENST00000360578	ENST00000509048		TCGA	RV	STAD	TCGA-BR-7959-01A	TPPP	chr5	677865	-	FAM134B	chr5	16572211	-
intron-3CDS	ENST00000437099	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000323816	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
In-frame	ENST00000432992	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
5UTR-3CDS	ENST00000540214	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000585266	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000580865	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000583882	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000542249	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000396115	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000579158	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
intron-3CDS	ENST00000578655	ENST00000226207		TCGA	RV	STAD	TCGA-MX-A666-01A	GAS7	chr17	10101525	-	MYH1	chr17	10415863	-
Frame-shit	ENST00000533861	ENST00000308488		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
Frame-shit	ENST00000533861	ENST00000360355		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
5CDS-5UTR	ENST00000533861	ENST00000480887		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
5CDS-intron	ENST00000533861	ENST00000530604		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
Frame-shit	ENST00000333449	ENST00000308488		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
Frame-shit	ENST00000333449	ENST00000360355		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
5CDS-5UTR	ENST00000333449	ENST00000480887		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
5CDS-intron	ENST00000333449	ENST00000530604		TCGA	RV	STAD	TCGA-VQ-A8PU-01A	TMEM179B	chr11	62554999	+	RSF1	chr11	77413540	-
In-frame	ENST00000397601	ENST00000376705		TCGA	RV	STAD	TCGA-BR-8373-01A	MBNL2	chr13	97928663	+	HS6ST3	chr13	97484744	+
In-frame	ENST00000343600	ENST00000376705		TCGA	RV	STAD	TCGA-BR-8373-01A	MBNL2	chr13	97928663	+	HS6ST3	chr13	97484744	+
In-frame	ENST00000345429	ENST00000376705		TCGA	RV	STAD	TCGA-BR-8373-01A	MBNL2	chr13	97928663	+	HS6ST3	chr13	97484744	+
In-frame	ENST00000376673	ENST00000376705		TCGA	RV	STAD	TCGA-BR-8373-01A	MBNL2	chr13	97928663	+	HS6ST3	chr13	97484744	+
In-frame	ENST00000445661	ENST00000376705		TCGA	RV	STAD	TCGA-BR-8373-01A	MBNL2	chr13	97928663	+	HS6ST3	chr13	97484744	+
5CDS-5UTR	ENST00000263650	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000263650	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000389989	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000389989	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000525498	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000525498	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
intron-5UTR	ENST00000542243	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
intron-5UTR	ENST00000542243	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000348039	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
5CDS-5UTR	ENST00000348039	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
intron-5UTR	ENST00000478260	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
intron-5UTR	ENST00000478260	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
intron-5UTR	ENST00000528124	ENST00000389832		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
intron-5UTR	ENST00000528124	ENST00000436689		TCGA	RV	STAD	TCGA-CD-8535-01A	OSBPL5	chr11	3140777	-	MRGPRE	chr11	3250090	-
Frame-shit	ENST00000226319	ENST00000326639		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000226319	ENST00000264584		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000226319	ENST00000441387		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-5UTR	ENST00000226319	ENST00000354456		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000226319	ENST00000506199		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000226319	ENST00000512292		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000226319	ENST00000394288		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000226319	ENST00000432347		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000226319	ENST00000427266		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000511647	ENST00000326639		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000511647	ENST00000264584		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000511647	ENST00000441387		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-5UTR	ENST00000511647	ENST00000354456		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000511647	ENST00000506199		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000511647	ENST00000512292		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000511647	ENST00000394288		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000511647	ENST00000432347		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000511647	ENST00000427266		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000452328	ENST00000326639		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000452328	ENST00000264584		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000452328	ENST00000441387		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-5UTR	ENST00000452328	ENST00000354456		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000452328	ENST00000506199		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000452328	ENST00000512292		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000452328	ENST00000394288		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000452328	ENST00000432347		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000452328	ENST00000427266		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000512960	ENST00000326639		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000512960	ENST00000264584		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000512960	ENST00000441387		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-5UTR	ENST00000512960	ENST00000354456		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000512960	ENST00000506199		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000512960	ENST00000512292		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000512960	ENST00000394288		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000512960	ENST00000432347		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000512960	ENST00000427266		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000413543	ENST00000326639		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000413543	ENST00000264584		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000413543	ENST00000441387		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-5UTR	ENST00000413543	ENST00000354456		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000413543	ENST00000506199		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000413543	ENST00000512292		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000413543	ENST00000394288		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000413543	ENST00000432347		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
5CDS-intron	ENST00000413543	ENST00000427266		TCGA	RV	STAD	TCGA-KB-A6F7-01A	PHF17	chr4	129752965	+	LARP1B	chr4	129083349	+
Frame-shit	ENST00000356577	ENST00000290200		TCGA	RV	STAD	TCGA-BR-8289-01A	SON	chr21	34932081	+	IL10RB	chr21	34668489	+
Frame-shit	ENST00000290239	ENST00000290200		TCGA	RV	STAD	TCGA-BR-8289-01A	SON	chr21	34932081	+	IL10RB	chr21	34668489	+
Frame-shit	ENST00000381692	ENST00000290200		TCGA	RV	STAD	TCGA-BR-8289-01A	SON	chr21	34932081	+	IL10RB	chr21	34668489	+
Frame-shit	ENST00000300278	ENST00000290200		TCGA	RV	STAD	TCGA-BR-8289-01A	SON	chr21	34932081	+	IL10RB	chr21	34668489	+
intron-3CDS	ENST00000381679	ENST00000290200		TCGA	RV	STAD	TCGA-BR-8289-01A	SON	chr21	34932081	+	IL10RB	chr21	34668489	+
intron-3CDS	ENST00000470533	ENST00000290200		TCGA	RV	STAD	TCGA-BR-8289-01A	SON	chr21	34932081	+	IL10RB	chr21	34668489	+
intron-3CDS	ENST00000230323	ENST00000373025		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000230323	ENST00000425343		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000358871	ENST00000373025		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000358871	ENST00000425343		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000420312	ENST00000373025		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000420312	ENST00000425343		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000403298	ENST00000373025		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000403298	ENST00000425343		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
5UTR-3CDS	ENST00000373033	ENST00000373025		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
5UTR-3CDS	ENST00000373033	ENST00000425343		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000394283	ENST00000373025		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
intron-3CDS	ENST00000394283	ENST00000425343		TCGA	RV	STAD	TCGA-CD-8525-01A	TFEB	chr6	41703088	-	PGC	chr6	41712546	-
Frame-shit	ENST00000349769	ENST00000540274		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
Frame-shit	ENST00000349769	ENST00000377307		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
Frame-shit	ENST00000349769	ENST00000276826		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
5CDS-intron	ENST00000349769	ENST00000528810		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
intron-3CDS	ENST00000531727	ENST00000540274		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
intron-3CDS	ENST00000531727	ENST00000377307		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
intron-3CDS	ENST00000531727	ENST00000276826		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
intron-intron	ENST00000531727	ENST00000528810		TCGA	RV	STAD	TCGA-BR-8678-01A	CPSF1	chr8	145634399	-	ARHGAP39	chr8	145806661	-
Frame-shit	ENST00000455789	ENST00000409673		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
Frame-shit	ENST00000455789	ENST00000272732		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
5CDS-3UTR	ENST00000455789	ENST00000548921		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
In-frame	ENST00000310015	ENST00000409673		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
In-frame	ENST00000310015	ENST00000272732		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
5CDS-3UTR	ENST00000310015	ENST00000548921		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
In-frame	ENST00000418194	ENST00000409673		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
In-frame	ENST00000418194	ENST00000272732		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
5CDS-3UTR	ENST00000418194	ENST00000548921		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
intron-3CDS	ENST00000483084	ENST00000409673		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
intron-3CDS	ENST00000483084	ENST00000272732		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
intron-3UTR	ENST00000483084	ENST00000548921		TCGA	RV	STAD	TCGA-BR-A4PD-01A	SP3	chr2	174819601	-	SCRN3	chr2	175287613	+
In-frame	ENST00000283558	ENST00000301831		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000283558	ENST00000420927		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000283558	ENST00000489118		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000283558	ENST00000414606		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
In-frame	ENST00000375630	ENST00000301831		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000375630	ENST00000420927		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000375630	ENST00000489118		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000375630	ENST00000414606		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
In-frame	ENST00000487903	ENST00000301831		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000487903	ENST00000420927		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000487903	ENST00000489118		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000487903	ENST00000414606		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
In-frame	ENST00000375645	ENST00000301831		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000375645	ENST00000420927		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000375645	ENST00000489118		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
5CDS-intron	ENST00000375645	ENST00000414606		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
intron-3CDS	ENST00000419448	ENST00000301831		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
intron-intron	ENST00000419448	ENST00000420927		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
intron-intron	ENST00000419448	ENST00000489118		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
intron-intron	ENST00000419448	ENST00000414606		TCGA	RV	STAD	TCGA-BR-A4CR-01A	ATP11A	chr13	113530255	+	ULK4	chr3	41831335	-
Frame-shit	ENST00000224950	ENST00000369733		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
Frame-shit	ENST00000224950	ENST00000353479		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5CDS-intron	ENST00000224950	ENST00000480127		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5CDS-intron	ENST00000224950	ENST00000393211		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
In-frame	ENST00000369764	ENST00000369733		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
In-frame	ENST00000369764	ENST00000353479		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5CDS-intron	ENST00000369764	ENST00000480127		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5CDS-intron	ENST00000369764	ENST00000393211		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5UTR-3CDS	ENST00000466828	ENST00000369733		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5UTR-3CDS	ENST00000466828	ENST00000353479		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5UTR-intron	ENST00000466828	ENST00000480127		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5UTR-intron	ENST00000466828	ENST00000393211		TCGA	RV	STAD	TCGA-VQ-A925-01A	OBFC1	chr10	105648830	-	COL17A1	chr10	105795321	-
5CDS-5UTR	ENST00000263694	ENST00000257100		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000263694	ENST00000373648		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000263694	ENST00000360482		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000263694	ENST00000533231		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5UTR-5UTR	ENST00000489853	ENST00000257100		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5UTR-5UTR	ENST00000489853	ENST00000373648		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5UTR-5UTR	ENST00000489853	ENST00000360482		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5UTR-5UTR	ENST00000489853	ENST00000533231		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000373720	ENST00000257100		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000373720	ENST00000373648		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000373720	ENST00000360482		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
intron-5UTR	ENST00000373720	ENST00000533231		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000446633	ENST00000257100		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000446633	ENST00000373648		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000446633	ENST00000360482		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000446633	ENST00000533231		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31754221	-	SPOCD1	chr1	32267306	-
5CDS-5UTR	ENST00000398665	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	DOT1L	chr19	2164264	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000398665	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	DOT1L	chr19	2164264	+	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000608122	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	DOT1L	chr19	2164264	+	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000608122	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	DOT1L	chr19	2164264	+	PLEKHF1	chr19	30164731	+
3UTR-3CDS	ENST00000469172	ENST00000373189		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
3UTR-3UTR	ENST00000469172	ENST00000469204		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000265866	ENST00000373189		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000265866	ENST00000469204		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000441000	ENST00000373189		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000441000	ENST00000469204		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
In-frame	ENST00000354695	ENST00000373189		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
5CDS-3UTR	ENST00000354695	ENST00000469204		TCGA	RV	STAD	TCGA-FP-8631-01A	HNRNPH3	chr10	70099312	+	SLC29A3	chr10	73121711	+
Frame-shit	ENST00000317702	ENST00000319481		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000317702	ENST00000399443		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000317702	ENST00000357041		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000317702	ENST00000399441		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000317702	ENST00000582618		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000591909	ENST00000319481		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000591909	ENST00000399443		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000591909	ENST00000357041		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000591909	ENST00000399441		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000591909	ENST00000582618		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000586653	ENST00000319481		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000586653	ENST00000399443		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000586653	ENST00000357041		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000586653	ENST00000399441		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000586653	ENST00000582618		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000592683	ENST00000319481		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000592683	ENST00000399443		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000592683	ENST00000357041		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000592683	ENST00000399441		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000592683	ENST00000582618		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000590967	ENST00000319481		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000590967	ENST00000399443		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000590967	ENST00000357041		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000590967	ENST00000399441		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000590967	ENST00000582618		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000591208	ENST00000319481		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000591208	ENST00000399443		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
Frame-shit	ENST00000591208	ENST00000357041		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000591208	ENST00000399441		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
5CDS-intron	ENST00000591208	ENST00000582618		TCGA	RV	STAD	TCGA-D7-A6EV-01A	TUBB6	chr18	12308794	+	OSBPL1A	chr18	21761243	-
In-frame	ENST00000219271	ENST00000360716		TCGA	RV	STAD	TCGA-BR-8080-01A	MMP15	chr16	58060416	+	CCDC135	chr16	57761211	+
In-frame	ENST00000219271	ENST00000394337		TCGA	RV	STAD	TCGA-BR-8080-01A	MMP15	chr16	58060416	+	CCDC135	chr16	57761211	+
In-frame	ENST00000219271	ENST00000336825		TCGA	RV	STAD	TCGA-BR-8080-01A	MMP15	chr16	58060416	+	CCDC135	chr16	57761211	+
5UTR-3CDS	ENST00000442092	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000442092	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000442092	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000442092	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000266022	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000266022	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000266022	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000266022	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000443081	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000443081	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000443081	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000443081	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000539992	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000539992	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000539992	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000539992	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
3UTR-3CDS	ENST00000441115	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
3UTR-3CDS	ENST00000441115	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
3UTR-intron	ENST00000441115	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
3UTR-intron	ENST00000441115	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000422955	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-3CDS	ENST00000422955	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000422955	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5UTR-intron	ENST00000422955	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
intron-3CDS	ENST00000421682	ENST00000327697		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
intron-3CDS	ENST00000421682	ENST00000432042		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
intron-intron	ENST00000421682	ENST00000433785		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
intron-intron	ENST00000421682	ENST00000497099		TCGA	RV	STAD	TCGA-VQ-A91N-01A	RBM6	chr3	49977658	+	RNF123	chr3	49749912	+
5CDS-5UTR	ENST00000409792	ENST00000265565		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
5CDS-5UTR	ENST00000409792	ENST00000441517		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
5CDS-5UTR	ENST00000409792	ENST00000545718		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
5CDS-intron	ENST00000409792	ENST00000465628		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
intron-5UTR	ENST00000492397	ENST00000265565		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
intron-5UTR	ENST00000492397	ENST00000441517		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
intron-5UTR	ENST00000492397	ENST00000545718		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
intron-intron	ENST00000492397	ENST00000465628		TCGA	RV	STAD	TCGA-BR-A4CR-01A	SETD2	chr3	47139445	-	SCAP	chr3	47484581	-
Frame-shit	ENST00000338675	ENST00000323541		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000454838		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000449825		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000323578		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000429789		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000336845		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000528581		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000338675	ENST00000436108		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000338675	ENST00000526714		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000323541		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000454838		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000449825		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000323578		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000429789		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000336845		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000528581		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
Frame-shit	ENST00000382409	ENST00000436108		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000382409	ENST00000526714		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000323541		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000454838		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000449825		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000323578		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000429789		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000336845		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000528581		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000525904	ENST00000436108		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
5UTR-intron	ENST00000525904	ENST00000526714		TCGA	RV	STAD	TCGA-BR-A452-01A	DEAF1	chr11	674536	-	CHID1	chr11	870499	-
In-frame	ENST00000602402	ENST00000376873		TCGA	RV	STAD	TCGA-BR-8289-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000602402	ENST00000299339		TCGA	RV	STAD	TCGA-BR-8289-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000602402	ENST00000376855		TCGA	RV	STAD	TCGA-BR-8289-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000376795	ENST00000376873		TCGA	RV	STAD	TCGA-BR-8289-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000376795	ENST00000299339		TCGA	RV	STAD	TCGA-BR-8289-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
5CDS-intron	ENST00000376795	ENST00000376855		TCGA	RV	STAD	TCGA-BR-8289-01A	DNAJC3	chr13	96329591	+	CLDN10	chr13	96212386	+
In-frame	ENST00000254351	ENST00000338086		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
In-frame	ENST00000254351	ENST00000319801		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
In-frame	ENST00000254351	ENST00000361078		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
In-frame	ENST00000254351	ENST00000536417		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
In-frame	ENST00000254351	ENST00000403432		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000254351	ENST00000420234		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000381150	ENST00000338086		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000381150	ENST00000319801		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000381150	ENST00000361078		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000381150	ENST00000536417		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
Frame-shit	ENST00000381150	ENST00000403432		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
5CDS-intron	ENST00000381150	ENST00000420234		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000403076	ENST00000338086		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000403076	ENST00000319801		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000403076	ENST00000361078		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000403076	ENST00000536417		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000403076	ENST00000403432		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-intron	ENST00000403076	ENST00000420234		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000482879	ENST00000338086		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000482879	ENST00000319801		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000482879	ENST00000361078		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000482879	ENST00000536417		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-3CDS	ENST00000482879	ENST00000403432		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
intron-intron	ENST00000482879	ENST00000420234		TCGA	RV	STAD	TCGA-HF-A5NB-01A	SDC1	chr2	20402848	-	PUM2	chr2	20463221	-
In-frame	ENST00000262461	ENST00000503335		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-intron	ENST00000262461	ENST00000508365		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-intron	ENST00000262461	ENST00000418761		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-intron	ENST00000262461	ENST00000274473		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-3UTR	ENST00000262461	ENST00000510828		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
In-frame	ENST00000343225	ENST00000503335		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-intron	ENST00000343225	ENST00000508365		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-intron	ENST00000343225	ENST00000418761		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-intron	ENST00000343225	ENST00000274473		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-3UTR	ENST00000343225	ENST00000510828		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
intron-3CDS	ENST00000507791	ENST00000503335		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
intron-intron	ENST00000507791	ENST00000508365		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
intron-intron	ENST00000507791	ENST00000418761		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
intron-intron	ENST00000507791	ENST00000274473		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
intron-3UTR	ENST00000507791	ENST00000510828		TCGA	RV	STAD	TCGA-BR-8590-01A	SLC12A2	chr5	127487088	+	MEGF10	chr5	126790258	+
5CDS-5UTR	ENST00000536681	ENST00000312156		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000536681	ENST00000435572		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000536681	ENST00000540264		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000536681	ENST00000553070		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
intron-5UTR	ENST00000549080	ENST00000312156		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
intron-5UTR	ENST00000549080	ENST00000435572		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
intron-5UTR	ENST00000549080	ENST00000540264		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
intron-5UTR	ENST00000549080	ENST00000553070		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000182377	ENST00000312156		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000182377	ENST00000435572		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000182377	ENST00000540264		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000182377	ENST00000553070		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000547116	ENST00000312156		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000547116	ENST00000435572		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000547116	ENST00000540264		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
5CDS-5UTR	ENST00000547116	ENST00000553070		TCGA	RV	STAD	TCGA-BR-A4PF-01A	FAR2	chr12	29474857	+	NFE2	chr12	54689088	-
Frame-shit	ENST00000317568	ENST00000377809		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000317568	ENST00000402010		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000317568	ENST00000413835		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000377810		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000315032		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000508192		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000361128		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000350490		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000502399		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000509502		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000317568	ENST00000513765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000317568	ENST00000408948		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000317568	ENST00000425897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
In-frame	ENST00000531296	ENST00000377809		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
In-frame	ENST00000531296	ENST00000402010		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
In-frame	ENST00000531296	ENST00000413835		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000377810		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000315032		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000508192		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000361128		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000350490		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000502399		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000509502		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000531296	ENST00000513765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000531296	ENST00000408948		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000531296	ENST00000425897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000355991	ENST00000377809		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000355991	ENST00000402010		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000355991	ENST00000413835		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000377810		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000315032		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000508192		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000361128		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000350490		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000502399		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000509502		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000355991	ENST00000513765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000355991	ENST00000408948		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000355991	ENST00000425897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000416776	ENST00000377809		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000416776	ENST00000402010		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
Frame-shit	ENST00000416776	ENST00000413835		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000377810		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000315032		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000508192		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000361128		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000350490		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000502399		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000509502		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000416776	ENST00000513765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000416776	ENST00000408948		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000416776	ENST00000425897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	FRMD8	chr11	65154592	+	MARK2	chr11	63662631	+
5UTR-5UTR	ENST00000300557	ENST00000393408		TCGA	RV	STAD	TCGA-BR-8286-01A	PRR15L	chr17	46035023	-	CBX1	chr17	46154403	-
5UTR-5UTR	ENST00000300557	ENST00000225603		TCGA	RV	STAD	TCGA-BR-8286-01A	PRR15L	chr17	46035023	-	CBX1	chr17	46154403	-
5UTR-5UTR	ENST00000300557	ENST00000495350		TCGA	RV	STAD	TCGA-BR-8286-01A	PRR15L	chr17	46035023	-	CBX1	chr17	46154403	-
In-frame	ENST00000566780	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000566780	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
In-frame	ENST00000406884	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000406884	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
In-frame	ENST00000539474	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000539474	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
In-frame	ENST00000402655	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000402655	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
In-frame	ENST00000408984	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000408984	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
In-frame	ENST00000355860	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000355860	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
intron-3CDS	ENST00000565791	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
intron-intron	ENST00000565791	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
Frame-shit	ENST00000569818	ENST00000302536		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
5CDS-intron	ENST00000569818	ENST00000563850		TCGA	RV	STAD	TCGA-CD-8535-01A	WWOX	chr16	78133782	+	VAT1L	chr16	77850818	+
Frame-shit	ENST00000369799	ENST00000369851		TCGA	RV	STAD	TCGA-BR-8060-01A	AHCYL1	chr1	110527794	+	GNAI3	chr1	110125059	+
3UTR-3CDS	ENST00000475081	ENST00000369851		TCGA	RV	STAD	TCGA-BR-8060-01A	AHCYL1	chr1	110527794	+	GNAI3	chr1	110125059	+
intron-3CDS	ENST00000359172	ENST00000369851		TCGA	RV	STAD	TCGA-BR-8060-01A	AHCYL1	chr1	110527794	+	GNAI3	chr1	110125059	+
intron-3CDS	ENST00000393614	ENST00000369851		TCGA	RV	STAD	TCGA-BR-8060-01A	AHCYL1	chr1	110527794	+	GNAI3	chr1	110125059	+
Frame-shit	ENST00000233146	ENST00000405271		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000233146	ENST00000263735		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000543555	ENST00000405271		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000543555	ENST00000263735		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000406134	ENST00000405271		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
Frame-shit	ENST00000406134	ENST00000263735		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
intron-3CDS	ENST00000461394	ENST00000405271		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
intron-3CDS	ENST00000461394	ENST00000263735		TCGA	RV	STAD	TCGA-CD-8533-01A	MSH2	chr2	47643568	+	EPCAM	chr2	47612305	+
In-frame	ENST00000367879	ENST00000420696		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000367879	ENST00000401534		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000367879	ENST00000559240		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000367879	ENST00000367897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000367879	ENST00000540236		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-5UTR	ENST00000367879	ENST00000560641		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000367879	ENST00000474046		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000367879	ENST00000485769		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000367879	ENST00000540246		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000372212	ENST00000420696		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000372212	ENST00000401534		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000372212	ENST00000559240		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000372212	ENST00000367897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000372212	ENST00000540236		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-5UTR	ENST00000372212	ENST00000560641		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-intron	ENST00000372212	ENST00000474046		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-intron	ENST00000372212	ENST00000485769		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-intron	ENST00000372212	ENST00000540246		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000462329	ENST00000420696		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000462329	ENST00000401534		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000462329	ENST00000559240		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000462329	ENST00000367897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-3CDS	ENST00000462329	ENST00000540236		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-5UTR	ENST00000462329	ENST00000560641		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-intron	ENST00000462329	ENST00000474046		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-intron	ENST00000462329	ENST00000485769		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
3UTR-intron	ENST00000462329	ENST00000540246		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000469256	ENST00000420696		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000469256	ENST00000401534		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000469256	ENST00000559240		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000469256	ENST00000367897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000469256	ENST00000540236		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-5UTR	ENST00000469256	ENST00000560641		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000469256	ENST00000474046		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000469256	ENST00000485769		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000469256	ENST00000540246		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000470820	ENST00000420696		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000470820	ENST00000401534		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000470820	ENST00000559240		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000470820	ENST00000367897		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
In-frame	ENST00000470820	ENST00000540236		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-5UTR	ENST00000470820	ENST00000560641		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000470820	ENST00000474046		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000470820	ENST00000485769		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
5CDS-intron	ENST00000470820	ENST00000540246		TCGA	RV	STAD	TCGA-VQ-A92D-01A	UCK2	chr1	165875206	+	PBX1	chr1	164761731	+
Frame-shit	ENST00000397843	ENST00000260264		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120139919	+
Frame-shit	ENST00000397843	ENST00000543440		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120139919	+
Frame-shit	ENST00000356641	ENST00000260264		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120139919	+
Frame-shit	ENST00000356641	ENST00000543440		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120139919	+
intron-3CDS	ENST00000532993	ENST00000260264		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120139919	+
intron-3CDS	ENST00000532993	ENST00000543440		TCGA	RV	STAD	TCGA-BR-A452-01A	ARHGEF12	chr11	120207984	+	POU2F3	chr11	120139919	+
5CDS-5UTR	ENST00000444214	ENST00000395170		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000444214	ENST00000547306		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000444214	ENST00000316299		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000444214	ENST00000548065		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000444214	ENST00000552212		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000550765	ENST00000395170		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000550765	ENST00000547306		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000550765	ENST00000316299		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000550765	ENST00000548065		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000550765	ENST00000552212		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000552878	ENST00000395170		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000552878	ENST00000547306		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000552878	ENST00000316299		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000552878	ENST00000548065		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000552878	ENST00000552212		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000453172	ENST00000395170		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000453172	ENST00000547306		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000453172	ENST00000316299		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-intron	ENST00000453172	ENST00000548065		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5CDS-5UTR	ENST00000453172	ENST00000552212		TCGA	RV	STAD	TCGA-BR-8289-01A	FKBP11	chr12	49317565	-	PRKAG1	chr12	49399635	-
5UTR-5UTR	ENST00000370982	ENST00000370981		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000370982	ENST00000395201		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000494936	ENST00000370981		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
5UTR-5UTR	ENST00000494936	ENST00000395201		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GNG12	chr1	68299027	-	DIRAS3	chr1	68513045	-
In-frame	ENST00000356634	ENST00000544305		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000356634	ENST00000374630		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000356634	ENST00000400191		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000356634	ENST00000374632		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000356634	ENST00000374627		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
5CDS-3UTR	ENST00000356634	ENST00000465676		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000400181	ENST00000544305		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000400181	ENST00000374630		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000400181	ENST00000400191		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000400181	ENST00000374632		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000400181	ENST00000374627		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
5CDS-3UTR	ENST00000400181	ENST00000465676		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000542151	ENST00000544305		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000542151	ENST00000374630		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000542151	ENST00000400191		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000542151	ENST00000374632		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
In-frame	ENST00000542151	ENST00000374627		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
5CDS-3UTR	ENST00000542151	ENST00000465676		TCGA	RV	STAD	TCGA-BR-4357-01A	KDM1A	chr1	23357127	+	EPHB2	chr1	23208852	+
intron-intron	ENST00000548961	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000548961	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-intron	ENST00000427314	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000427314	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-intron	ENST00000312377	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000312377	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-intron	ENST00000434422	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000434422	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-intron	ENST00000454520	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000454520	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-intron	ENST00000551016	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000551016	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-intron	ENST00000547905	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
5CDS-5UTR	ENST00000547905	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-intron	ENST00000547061	ENST00000552491		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000547825		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000552823		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000394943		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000341247		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000552783		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000552909		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
intron-5UTR	ENST00000547061	ENST00000552008		TCGA	RV	STAD	TCGA-CG-4438-01A	RACGAP1	chr12	50410414	-	LIMA1	chr12	50594667	-
In-frame	ENST00000337907	ENST00000368533		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000337907	ENST00000469717		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000337907	ENST00000330188		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000337907	ENST00000341485		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000337907	ENST00000341372		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000337907	ENST00000328159		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000337907	ENST00000271850		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000337907	ENST00000302206		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000337907	ENST00000368531		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000337907	ENST00000323144		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000337907	ENST00000368530		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-3CDS	ENST00000377464	ENST00000368533		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000377464	ENST00000469717		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000377464	ENST00000330188		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000377464	ENST00000341485		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000377464	ENST00000341372		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000377464	ENST00000328159		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000377464	ENST00000271850		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000377464	ENST00000302206		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000377464	ENST00000368531		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000377464	ENST00000323144		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000377464	ENST00000368530		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
In-frame	ENST00000400907	ENST00000368533		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400907	ENST00000469717		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400907	ENST00000330188		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400907	ENST00000341485		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400907	ENST00000341372		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400907	ENST00000328159		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400907	ENST00000271850		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400907	ENST00000302206		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400907	ENST00000368531		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400907	ENST00000323144		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400907	ENST00000368530		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
Frame-shit	ENST00000400908	ENST00000368533		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400908	ENST00000469717		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400908	ENST00000330188		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400908	ENST00000341485		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400908	ENST00000341372		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400908	ENST00000328159		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-intron	ENST00000400908	ENST00000271850		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400908	ENST00000302206		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400908	ENST00000368531		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400908	ENST00000323144		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
5CDS-5UTR	ENST00000400908	ENST00000368530		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-3CDS	ENST00000476556	ENST00000368533		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000476556	ENST00000469717		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000476556	ENST00000330188		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000476556	ENST00000341485		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000476556	ENST00000341372		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000476556	ENST00000328159		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000476556	ENST00000271850		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000476556	ENST00000302206		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000476556	ENST00000368531		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000476556	ENST00000323144		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000476556	ENST00000368530		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-3CDS	ENST00000460659	ENST00000368533		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000460659	ENST00000469717		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000460659	ENST00000330188		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000460659	ENST00000341485		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000460659	ENST00000341372		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000460659	ENST00000328159		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-intron	ENST00000460659	ENST00000271850		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000460659	ENST00000302206		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000460659	ENST00000368531		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000460659	ENST00000323144		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
intron-5UTR	ENST00000460659	ENST00000368530		TCGA	RV	STAD	TCGA-RD-A8MW-01A	RERE	chr1	8674620	-	TPM3	chr1	154148724	-
Frame-shit	ENST00000585892	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000585892	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000585892	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000585892	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000314646	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000314646	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000314646	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000314646	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000359692	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000359692	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000359692	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000359692	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000389253	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000389253	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000389253	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000389253	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000355667	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000355667	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000355667	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000355667	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000408974	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000408974	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
Frame-shit	ENST00000408974	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5CDS-intron	ENST00000408974	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
intron-3CDS	ENST00000591819	ENST00000407327		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
intron-3CDS	ENST00000591819	ENST00000335757		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
intron-3CDS	ENST00000591819	ENST00000586078		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
intron-intron	ENST00000591819	ENST00000588214		TCGA	RV	STAD	TCGA-BR-8373-01A	DNM2	chr19	10893796	+	SLC44A2	chr19	10745432	+
5UTR-3CDS	ENST00000610247	ENST00000429084		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
5UTR-3CDS	ENST00000610247	ENST00000359593		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
5UTR-intron	ENST00000610247	ENST00000478501		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
5UTR-intron	ENST00000610247	ENST00000421755		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
5UTR-intron	ENST00000610247	ENST00000422582		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000452089	ENST00000429084		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000452089	ENST00000359593		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000452089	ENST00000478501		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000452089	ENST00000421755		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000452089	ENST00000422582		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000448382	ENST00000429084		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000448382	ENST00000359593		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000448382	ENST00000478501		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000448382	ENST00000421755		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000448382	ENST00000422582		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000444073	ENST00000429084		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000444073	ENST00000359593		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000444073	ENST00000478501		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000444073	ENST00000421755		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000444073	ENST00000422582		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000609309	ENST00000429084		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000609309	ENST00000359593		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000609309	ENST00000478501		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000609309	ENST00000421755		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-intron	ENST00000609309	ENST00000422582		TCGA	RV	STAD	TCGA-FP-8631-01A	PILRB	chr7	99936512	+	AP4M1	chr7	99702863	+
intron-3CDS	ENST00000503278	ENST00000438796		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
intron-3CDS	ENST00000503278	ENST00000414675		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
intron-intron	ENST00000503278	ENST00000441090		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
intron-intron	ENST00000503278	ENST00000334859		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
intron-intron	ENST00000503278	ENST00000425562		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
intron-intron	ENST00000503278	ENST00000493726		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
intron-intron	ENST00000503278	ENST00000536618		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
Frame-shit	ENST00000425103	ENST00000438796		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
Frame-shit	ENST00000425103	ENST00000414675		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000425103	ENST00000441090		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000425103	ENST00000334859		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000425103	ENST00000425562		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000425103	ENST00000493726		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000425103	ENST00000536618		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
Frame-shit	ENST00000307659	ENST00000438796		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
Frame-shit	ENST00000307659	ENST00000414675		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000307659	ENST00000441090		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000307659	ENST00000334859		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000307659	ENST00000425562		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000307659	ENST00000493726		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
5CDS-intron	ENST00000307659	ENST00000536618		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	KIAA0232	chr4	6826411	+	LRCH3	chr3	197541779	+
In-frame	ENST00000505658	ENST00000360761		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000354983		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000352832		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000442258		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000416767		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000502264		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000515411		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000510115		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000503485		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000515165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000507510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000514181		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000515765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000507336		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000514079		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000507896		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000512389		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000513689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000513964		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000505165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000507609		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000514717		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000510366		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000429973		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000359106		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000505658	ENST00000358244		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000360761		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000354983		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000352832		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000442258		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000416767		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000502264		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000515411		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000510115		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000503485		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000515165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000507510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000514181		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000515765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000507336		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000514079		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000507896		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000512389		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000513689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000513964		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000505165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000507609		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000514717		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000510366		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000429973		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000359106		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000393227	ENST00000358244		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000360761		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000354983		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000352832		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000442258		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000416767		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000502264		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000515411		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000510115		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000503485		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000515165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000507510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000514181		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000515765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000507336		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000514079		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000507896		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000512389		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000513689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000513964		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000505165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000507609		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000514717		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000510366		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000429973		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000359106		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000311571	ENST00000358244		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000360761		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000354983		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000352832		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000442258		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000416767		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000502264		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000515411		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000510115		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000503485		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000515165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000507510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000514181		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000515765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000507336		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000514079		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000507896		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000512389		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000513689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000513964		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000505165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000507609		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000514717		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000510366		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000429973		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000359106		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000240304	ENST00000358244		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000360761		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000354983		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000352832		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000442258		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000416767		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000502264		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000515411		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000510115		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000503485		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000515165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000507510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000514181		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000515765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000507336		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000514079		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000507896		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000512389		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000513689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000513964		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000505165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000507609		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000514717		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000510366		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000429973		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000359106		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
In-frame	ENST00000544170	ENST00000358244		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000360761		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000354983		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000352832		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000442258		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000416767		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000502264		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000515411		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000510115		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000503485		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000515165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000507510		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000514181		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000515765		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000507336		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000514079		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000507896		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000512389		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000513689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000513964		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000505165		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000507609		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000514717		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000510366		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000429973		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000359106		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
intron-3CDS	ENST00000503798	ENST00000358244		TCGA	RV	STAD	TCGA-VQ-A92D-01A	LUC7L3	chr17	48819092	+	CACNA1G	chr17	48652904	+
Frame-shit	ENST00000306796	ENST00000306729		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000306796	ENST00000306739		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000306796	ENST00000580534		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000306796	ENST00000581647		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
5CDS-intron	ENST00000306796	ENST00000582404		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000354321	ENST00000306729		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000354321	ENST00000306739		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000354321	ENST00000580534		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
Frame-shit	ENST00000354321	ENST00000581647		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
5CDS-intron	ENST00000354321	ENST00000582404		TCGA	RV	STAD	TCGA-HU-A4GH-01A	DUS1L	chr17	80021344	-	ASPSCR1	chr17	79943383	+
5CDS-5UTR	ENST00000357156	ENST00000375114		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000357156	ENST00000246194		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000357156	ENST00000493399		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
3UTR-5UTR	ENST00000480759	ENST00000375114		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
3UTR-5UTR	ENST00000480759	ENST00000246194		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
3UTR-intron	ENST00000480759	ENST00000493399		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000417166	ENST00000375114		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000417166	ENST00000246194		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000417166	ENST00000493399		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000300469	ENST00000375114		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000300469	ENST00000246194		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000300469	ENST00000493399		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5UTR-5UTR	ENST00000374846	ENST00000375114		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5UTR-5UTR	ENST00000374846	ENST00000246194		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5UTR-intron	ENST00000374846	ENST00000493399		TCGA	RV	STAD	TCGA-BR-4366-01A	DYNLRB1	chr20	33104266	+	RALY	chr20	32619328	+
5UTR-3CDS	ENST00000264211	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000264211	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000264211	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000264211	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000400422	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000400422	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000400422	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000400422	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000602326	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000602326	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000602326	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000602326	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374935	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374935	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374935	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000374935	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374937	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374937	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374937	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000374937	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000536266	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000536266	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000536266	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-5UTR	ENST00000536266	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000374933	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000374933	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000374933	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-5UTR	ENST00000374933	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000544689	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000544689	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000544689	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-5UTR	ENST00000544689	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000356916	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000356916	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000356916	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000356916	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374927	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374927	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-3CDS	ENST00000374927	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000374927	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000537738	ENST00000357429		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000537738	ENST00000397100		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-3CDS	ENST00000537738	ENST00000397098		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
intron-5UTR	ENST00000537738	ENST00000488073		TCGA	RV	STAD	TCGA-HU-A4HD-01A	EIF4G3	chr1	21377359	-	C7orf50	chr7	1049779	-
5UTR-5UTR	ENST00000436066	ENST00000323670		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-intron	ENST00000436066	ENST00000392276		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-5UTR	ENST00000436066	ENST00000592153		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-intron	ENST00000436066	ENST00000392275		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-intron	ENST00000436066	ENST00000392278		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-5UTR	ENST00000592810	ENST00000323670		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-intron	ENST00000592810	ENST00000392276		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-5UTR	ENST00000592810	ENST00000592153		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-intron	ENST00000592810	ENST00000392275		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
5UTR-intron	ENST00000592810	ENST00000392278		TCGA	RV	STAD	TCGA-BR-8060-01A	PLEKHF1	chr19	30156412	+	C19orf12	chr19	30199330	-
In-frame	ENST00000359314	ENST00000311672		TCGA	RV	STAD	TCGA-BR-8060-01A	CD2AP	chr6	47471176	+	UQCRH	chr1	46782224	+
5CDS-intron	ENST00000359314	ENST00000486951		TCGA	RV	STAD	TCGA-BR-8060-01A	CD2AP	chr6	47471176	+	UQCRH	chr1	46782224	+
intron-3CDS	ENST00000486693	ENST00000311672		TCGA	RV	STAD	TCGA-BR-8060-01A	CD2AP	chr6	47471176	+	UQCRH	chr1	46782224	+
intron-intron	ENST00000486693	ENST00000486951		TCGA	RV	STAD	TCGA-BR-8060-01A	CD2AP	chr6	47471176	+	UQCRH	chr1	46782224	+
In-frame	ENST00000316399	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000316399	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
5CDS-intron	ENST00000316399	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000396356	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000396356	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
5CDS-intron	ENST00000396356	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000352083	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000352083	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
5CDS-intron	ENST00000352083	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
Frame-shit	ENST00000528252	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
Frame-shit	ENST00000528252	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
5CDS-intron	ENST00000528252	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000527619	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
In-frame	ENST00000527619	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
5CDS-intron	ENST00000527619	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
Frame-shit	ENST00000528429	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
Frame-shit	ENST00000528429	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
5CDS-intron	ENST00000528429	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
intron-3CDS	ENST00000533658	ENST00000344795		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
intron-3CDS	ENST00000533658	ENST00000373852		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
intron-intron	ENST00000533658	ENST00000342422		TCGA	RV	STAD	TCGA-VQ-A91S-01A	SOX6	chr11	16007750	-	C20orf24	chr20	35238004	+
Frame-shit	ENST00000335263	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000335263	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000424963	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000424963	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000322340	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000322340	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5UTR-3CDS	ENST00000499851	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5UTR-intron	ENST00000499851	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000342702	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000342702	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000556807	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000556807	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000558567	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000558567	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000299135	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000299135	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000454394	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000454394	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
Frame-shit	ENST00000556511	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-intron	ENST00000556511	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
3UTR-3CDS	ENST00000557186	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
3UTR-intron	ENST00000557186	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
intron-3CDS	ENST00000545563	ENST00000360184		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
intron-intron	ENST00000545563	ENST00000556791		TCGA	RV	STAD	TCGA-BR-7716-01A	WDR20	chr14	102606509	+	DYNC1H1	chr14	102514154	+
5CDS-5UTR	ENST00000353258	ENST00000396958		TCGA	RV	STAD	TCGA-BR-8289-01A	GDE1	chr16	19522161	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000353258	ENST00000293981		TCGA	RV	STAD	TCGA-BR-8289-01A	GDE1	chr16	19522161	-	FLYWCH2	chr16	2945221	+
5CDS-5UTR	ENST00000353258	ENST00000572006		TCGA	RV	STAD	TCGA-BR-8289-01A	GDE1	chr16	19522161	-	FLYWCH2	chr16	2945221	+
5CDS-intron	ENST00000353258	ENST00000572786		TCGA	RV	STAD	TCGA-BR-8289-01A	GDE1	chr16	19522161	-	FLYWCH2	chr16	2945221	+
5CDS-3UTR	ENST00000282570	ENST00000418066		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000282570	ENST00000409920		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000282570	ENST00000394295		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000282570	ENST00000536030		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-3UTR	ENST00000468386	ENST00000418066		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000468386	ENST00000409920		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000468386	ENST00000394295		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000468386	ENST00000536030		TCGA	RV	STAD	TCGA-BR-8289-01A	GMCL1	chr2	70057284	+	ANXA4	chr2	70008652	+
intron-3CDS	ENST00000544260	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000544260	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000544260	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000544260	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000544260	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-intron	ENST00000544260	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381869	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381869	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381869	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381869	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381869	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
5CDS-intron	ENST00000381869	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000381861	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000381861	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000381861	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000381861	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000381861	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-intron	ENST00000381861	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000262102	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000262102	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000262102	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000262102	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000262102	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
5CDS-intron	ENST00000262102	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
In-frame	ENST00000519263	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
In-frame	ENST00000519263	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
In-frame	ENST00000519263	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
In-frame	ENST00000519263	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
In-frame	ENST00000519263	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
5CDS-intron	ENST00000519263	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000400046	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000400046	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000400046	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000400046	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000400046	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-intron	ENST00000400046	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000297488	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000297488	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000297488	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000297488	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000297488	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-intron	ENST00000297488	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000518713	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000518713	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000518713	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000518713	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-3CDS	ENST00000518713	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
intron-intron	ENST00000518713	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381862	ENST00000262097		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381862	ENST00000381733		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381862	ENST00000417108		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381862	ENST00000520781		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000381862	ENST00000314146		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
5CDS-intron	ENST00000381862	ENST00000520051		TCGA	RV	STAD	TCGA-HU-A4GF-01A	MTUS1	chr8	17601113	-	ASAH1	chr8	17920739	-
Frame-shit	ENST00000399878	ENST00000295589		TCGA	RV	STAD	TCGA-VQ-A925-01A	SEL1L3	chr4	25759156	-	CCKAR	chr4	26484905	-
Frame-shit	ENST00000264868	ENST00000295589		TCGA	RV	STAD	TCGA-VQ-A925-01A	SEL1L3	chr4	25759156	-	CCKAR	chr4	26484905	-
In-frame	ENST00000502949	ENST00000295589		TCGA	RV	STAD	TCGA-VQ-A925-01A	SEL1L3	chr4	25759156	-	CCKAR	chr4	26484905	-
intron-3CDS	ENST00000513364	ENST00000295589		TCGA	RV	STAD	TCGA-VQ-A925-01A	SEL1L3	chr4	25759156	-	CCKAR	chr4	26484905	-
Frame-shit	ENST00000598810	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000598810	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000598810	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000593945	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000593945	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000593945	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000601519	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000601519	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000601519	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
In-frame	ENST00000311227	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
In-frame	ENST00000311227	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
In-frame	ENST00000311227	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000377214	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000377214	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000377214	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000539846	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000539846	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
Frame-shit	ENST00000539846	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
5UTR-3CDS	ENST00000598397	ENST00000339093		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
5UTR-3CDS	ENST00000598397	ENST00000596358		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
5UTR-3CDS	ENST00000598397	ENST00000391853		TCGA	RV	STAD	TCGA-BR-8060-01A	TEAD2	chr19	49858405	-	NOSIP	chr19	50060506	-
In-frame	ENST00000285238	ENST00000017003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
5CDS-intron	ENST00000285238	ENST00000507602		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
intron-3CDS	ENST00000515707	ENST00000017003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
intron-intron	ENST00000515707	ENST00000507602		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
intron-3CDS	ENST00000427699	ENST00000017003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
intron-intron	ENST00000427699	ENST00000507602		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
intron-3CDS	ENST00000510891	ENST00000017003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
intron-intron	ENST00000510891	ENST00000507602		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ABCC3	chr17	48755580	+	XYLT2	chr17	48435568	+
In-frame	ENST00000313654	ENST00000319481		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000313654	ENST00000399443		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000313654	ENST00000357041		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000313654	ENST00000399441		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000313654	ENST00000582618		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
In-frame	ENST00000399516	ENST00000319481		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000399516	ENST00000399443		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000399516	ENST00000357041		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000399516	ENST00000399441		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000399516	ENST00000582618		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
In-frame	ENST00000269217	ENST00000319481		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000269217	ENST00000399443		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000269217	ENST00000357041		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000269217	ENST00000399441		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000269217	ENST00000582618		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
In-frame	ENST00000587184	ENST00000319481		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000587184	ENST00000399443		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000587184	ENST00000357041		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000587184	ENST00000399441		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
5CDS-intron	ENST00000587184	ENST00000582618		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
3UTR-3CDS	ENST00000588770	ENST00000319481		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
3UTR-intron	ENST00000588770	ENST00000399443		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
3UTR-intron	ENST00000588770	ENST00000357041		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
3UTR-intron	ENST00000588770	ENST00000399441		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
3UTR-intron	ENST00000588770	ENST00000582618		TCGA	RV	STAD	TCGA-IN-A7NU-01A	LAMA3	chr18	21513899	+	OSBPL1A	chr18	21892070	-
In-frame	ENST00000355280	ENST00000355530		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
In-frame	ENST00000355280	ENST00000333476		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000355280	ENST00000576069		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
In-frame	ENST00000347992	ENST00000355530		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
In-frame	ENST00000347992	ENST00000333476		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000347992	ENST00000576069		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
In-frame	ENST00000453408	ENST00000355530		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
In-frame	ENST00000453408	ENST00000333476		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000453408	ENST00000576069		TCGA	RV	STAD	TCGA-CD-A486-01A	MINK1	chr17	4736935	+	SPNS3	chr17	4381867	+
In-frame	ENST00000375687	ENST00000398022		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375687	ENST00000217315		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000542461	ENST00000398022		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000542461	ENST00000217315		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000375689	ENST00000398022		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000375689	ENST00000217315		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000306058	ENST00000398022		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
5CDS-5UTR	ENST00000306058	ENST00000217315		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
3UTR-3CDS	ENST00000470145	ENST00000398022		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
3UTR-5UTR	ENST00000470145	ENST00000217315		TCGA	RV	STAD	TCGA-VQ-A8E2-01A	ASXL1	chr20	30956926	+	TM9SF4	chr20	30720816	+
In-frame	ENST00000330687	ENST00000396581		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000489892		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000376724		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000307859		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000497688		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000433713		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000436951		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000437563		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000470577		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000552119		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000429471		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000431397		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000475016		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000548672		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000445004		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000425845		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000488232		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000418267		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000383610		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000476094		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000547289		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000400651		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000434151		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000462556		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000549728		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000421981		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000430485		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000456884		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000330687	ENST00000486552		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
In-frame	ENST00000394106	ENST00000396581		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000489892		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000376724		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000307859		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000497688		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000433713		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000436951		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000437563		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000470577		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000552119		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000429471		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000431397		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000475016		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000548672		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000445004		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000425845		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000488232		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000418267		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000383610		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000476094		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000547289		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000400651		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000434151		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000462556		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000549728		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000421981		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000430485		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000456884		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
5CDS-intron	ENST00000394106	ENST00000486552		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-3CDS	ENST00000563952	ENST00000396581		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000489892		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000376724		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000307859		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000497688		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000433713		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000436951		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000437563		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000470577		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000552119		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000429471		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000431397		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000475016		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000548672		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000445004		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000425845		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000488232		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000418267		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000383610		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000476094		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000547289		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000400651		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000434151		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000462556		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000549728		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000421981		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000430485		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000456884		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
intron-intron	ENST00000563952	ENST00000486552		TCGA	RV	STAD	TCGA-R5-A805-01A	CMTM4	chr16	66730243	-	TRIM40	chr6	30113771	+
In-frame	ENST00000317269	ENST00000394023		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317269	ENST00000550164		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317269	ENST00000347471		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317269	ENST00000267064		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
5CDS-intron	ENST00000317269	ENST00000550859		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000357606	ENST00000394023		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000357606	ENST00000550164		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000357606	ENST00000347471		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000357606	ENST00000267064		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
5CDS-intron	ENST00000357606	ENST00000550859		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317287	ENST00000394023		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317287	ENST00000550164		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317287	ENST00000347471		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
In-frame	ENST00000317287	ENST00000267064		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
5CDS-intron	ENST00000317287	ENST00000550859		TCGA	RV	STAD	TCGA-BR-8060-01A	DNAJC14	chr12	56216854	-	SMARCC2	chr12	56568548	-
5UTR-3CDS	ENST00000269214	ENST00000383472		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-3CDS	ENST00000269214	ENST00000400091		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-5UTR	ENST00000269214	ENST00000262227		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000269214	ENST00000419673		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000269214	ENST00000531294		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000269214	ENST00000418986		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000269214	ENST00000314319		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000269214	ENST00000532996		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-3CDS	ENST00000580101	ENST00000383472		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-3CDS	ENST00000580101	ENST00000400091		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-5UTR	ENST00000580101	ENST00000262227		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000580101	ENST00000419673		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000580101	ENST00000531294		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000580101	ENST00000418986		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000580101	ENST00000314319		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
5UTR-intron	ENST00000580101	ENST00000532996		TCGA	RV	STAD	TCGA-VQ-AA6A-01A	ESCO1	chr18	19180584	-	ARHGAP28	chr18	6824761	+
In-frame	ENST00000369002	ENST00000359282		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000603815		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000437231		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000447282		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000549863		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000359462		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000546463		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000552296		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000552819		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000455667		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000439930		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000548933		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
In-frame	ENST00000369002	ENST00000541275		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000359282		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000603815		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000437231		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000447282		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000549863		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000359462		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000546463		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000552296		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000552819		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000455667		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000439930		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000548933		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
intron-3CDS	ENST00000460009	ENST00000541275		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SEC63	chr6	108214686	-	PCBP2	chr12	53853056	+
Frame-shit	ENST00000317147	ENST00000372469		TCGA	RV	STAD	TCGA-CD-A487-01A	CNOT1	chr16	58619242	-	PRRX2	chr9	132481510	+
Frame-shit	ENST00000569240	ENST00000372469		TCGA	RV	STAD	TCGA-CD-A487-01A	CNOT1	chr16	58619242	-	PRRX2	chr9	132481510	+
Frame-shit	ENST00000441024	ENST00000372469		TCGA	RV	STAD	TCGA-CD-A487-01A	CNOT1	chr16	58619242	-	PRRX2	chr9	132481510	+
intron-3CDS	ENST00000569732	ENST00000372469		TCGA	RV	STAD	TCGA-CD-A487-01A	CNOT1	chr16	58619242	-	PRRX2	chr9	132481510	+
intron-3CDS	ENST00000245138	ENST00000372469		TCGA	RV	STAD	TCGA-CD-A487-01A	CNOT1	chr16	58619242	-	PRRX2	chr9	132481510	+
intron-3CDS	ENST00000593786	ENST00000336431		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	NCOA6	chr20	33413275	-	GGT7	chr20	33440341	-
intron-intron	ENST00000593786	ENST00000469018		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	NCOA6	chr20	33413275	-	GGT7	chr20	33440341	-
intron-3CDS	ENST00000374796	ENST00000336431		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	NCOA6	chr20	33413275	-	GGT7	chr20	33440341	-
intron-intron	ENST00000374796	ENST00000469018		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	NCOA6	chr20	33413275	-	GGT7	chr20	33440341	-
5UTR-3CDS	ENST00000359003	ENST00000336431		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	NCOA6	chr20	33413275	-	GGT7	chr20	33440341	-
5UTR-intron	ENST00000359003	ENST00000469018		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	NCOA6	chr20	33413275	-	GGT7	chr20	33440341	-
5UTR-3CDS	ENST00000355112	ENST00000352732		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-3CDS	ENST00000355112	ENST00000565973		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-3CDS	ENST00000355112	ENST00000355100		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-intron	ENST00000355112	ENST00000562254		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-3CDS	ENST00000560509	ENST00000352732		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-3CDS	ENST00000560509	ENST00000565973		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-3CDS	ENST00000560509	ENST00000355100		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5UTR-intron	ENST00000560509	ENST00000562254		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
intron-3CDS	ENST00000560136	ENST00000352732		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
intron-3CDS	ENST00000560136	ENST00000565973		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
intron-3CDS	ENST00000560136	ENST00000355100		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
intron-intron	ENST00000560136	ENST00000562254		TCGA	RV	STAD	TCGA-CG-4449-01A	BLM	chr15	91260671	+	ABHD2	chr15	89694908	+
5CDS-3UTR	ENST00000288207	ENST00000438423		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000267811		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000452095		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000333725		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000557843		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-intron	ENST00000288207	ENST00000560764		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000543579		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000537840		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000343827		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000559710		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000288207	ENST00000559703		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000438423		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000267811		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000452095		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000333725		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000557843		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-intron	ENST00000559622	ENST00000560764		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000543579		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000537840		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000343827		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000559710		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
intron-3UTR	ENST00000559622	ENST00000559703		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CCNB2	chr15	59409567	+	TCF12	chr15	57578355	+
5CDS-3UTR	ENST00000405015	ENST00000472729		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405015	ENST00000311832		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405015	ENST00000538736		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000472729		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000311832		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000431489	ENST00000538736		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000472729		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000311832		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000354487	ENST00000538736		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000472729		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000311832		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000263991	ENST00000538736		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000472729		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000311832		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
5CDS-3UTR	ENST00000405289	ENST00000538736		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000472729		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000311832		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000496857	ENST00000538736		TCGA	RV	STAD	TCGA-VQ-A925-01A	EHBP1	chr2	62974587	+	COMMD1	chr2	62227836	+
In-frame	ENST00000266517	ENST00000381340		TCGA	RV	STAD	TCGA-D7-8575-01A	ETNK1	chr12	22826594	+	ITPR2	chr12	26634174	-
5CDS-intron	ENST00000266517	ENST00000545902		TCGA	RV	STAD	TCGA-D7-8575-01A	ETNK1	chr12	22826594	+	ITPR2	chr12	26634174	-
5CDS-intron	ENST00000266517	ENST00000242737		TCGA	RV	STAD	TCGA-D7-8575-01A	ETNK1	chr12	22826594	+	ITPR2	chr12	26634174	-
intron-3CDS	ENST00000335148	ENST00000381340		TCGA	RV	STAD	TCGA-D7-8575-01A	ETNK1	chr12	22826594	+	ITPR2	chr12	26634174	-
intron-intron	ENST00000335148	ENST00000545902		TCGA	RV	STAD	TCGA-D7-8575-01A	ETNK1	chr12	22826594	+	ITPR2	chr12	26634174	-
intron-intron	ENST00000335148	ENST00000242737		TCGA	RV	STAD	TCGA-D7-8575-01A	ETNK1	chr12	22826594	+	ITPR2	chr12	26634174	-
5UTR-3CDS	ENST00000358161	ENST00000309971		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000358161	ENST00000372770		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000358161	ENST00000539582		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3UTR	ENST00000358161	ENST00000494417		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000372739	ENST00000309971		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000372739	ENST00000372770		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000372739	ENST00000539582		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3UTR	ENST00000372739	ENST00000494417		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000372731	ENST00000309971		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000372731	ENST00000372770		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3CDS	ENST00000372731	ENST00000539582		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
5UTR-3UTR	ENST00000372731	ENST00000494417		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
intron-3CDS	ENST00000475367	ENST00000309971		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
intron-3CDS	ENST00000475367	ENST00000372770		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
intron-3CDS	ENST00000475367	ENST00000539582		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
intron-3UTR	ENST00000475367	ENST00000494417		TCGA	RV	STAD	TCGA-HU-A4H2-01A	SPTAN1	chr9	131314975	+	GLE1	chr9	131295792	+
In-frame	ENST00000216484	ENST00000400324		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
In-frame	ENST00000216484	ENST00000400330		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
In-frame	ENST00000216484	ENST00000400319		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
In-frame	ENST00000216484	ENST00000400320		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
In-frame	ENST00000216484	ENST00000377908		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
In-frame	ENST00000216484	ENST00000267215		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
5CDS-5UTR	ENST00000216484	ENST00000465066		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-3CDS	ENST00000556264	ENST00000400324		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-3CDS	ENST00000556264	ENST00000400330		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-3CDS	ENST00000556264	ENST00000400319		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-3CDS	ENST00000556264	ENST00000400320		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-3CDS	ENST00000556264	ENST00000377908		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-3CDS	ENST00000556264	ENST00000267215		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
intron-5UTR	ENST00000556264	ENST00000465066		TCGA	RV	STAD	TCGA-IN-AB1X-01A	SPTLC2	chr14	78043110	-	DIAPH3	chr13	60348957	-
5UTR-3CDS	ENST00000014914	ENST00000519301		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000520407		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000523079		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000338921		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000356819		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000287845		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000341377		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000287842		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000521670		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-3CDS	ENST00000014914	ENST00000405005		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-intron	ENST00000014914	ENST00000520502		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-intron	ENST00000014914	ENST00000539990		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
5UTR-intron	ENST00000014914	ENST00000523681		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000519301		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000520407		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000523079		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000338921		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000356819		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000287845		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000341377		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000287842		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000521670		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-3CDS	ENST00000542056	ENST00000405005		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-intron	ENST00000542056	ENST00000520502		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-intron	ENST00000542056	ENST00000539990		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
3UTR-intron	ENST00000542056	ENST00000523681		TCGA	RV	STAD	TCGA-B7-A5TN-01A	GPRC5A	chr12	13044598	+	NRG1	chr8	32453346	+
In-frame	ENST00000263228	ENST00000541043		TCGA	RV	STAD	TCGA-FP-8631-01A	UBE2R2	chr9	33817932	+	ACO1	chr9	32440463	+
In-frame	ENST00000263228	ENST00000379923		TCGA	RV	STAD	TCGA-FP-8631-01A	UBE2R2	chr9	33817932	+	ACO1	chr9	32440463	+
In-frame	ENST00000263228	ENST00000309951		TCGA	RV	STAD	TCGA-FP-8631-01A	UBE2R2	chr9	33817932	+	ACO1	chr9	32440463	+
In-frame	ENST00000321562	ENST00000377755		TCGA	RV	STAD	TCGA-CG-4466-01A	FKBP10	chr17	39969531	+	KRT40	chr17	39138715	-
In-frame	ENST00000321562	ENST00000398486		TCGA	RV	STAD	TCGA-CG-4466-01A	FKBP10	chr17	39969531	+	KRT40	chr17	39138715	-
intron-3CDS	ENST00000544340	ENST00000377755		TCGA	RV	STAD	TCGA-CG-4466-01A	FKBP10	chr17	39969531	+	KRT40	chr17	39138715	-
intron-3CDS	ENST00000544340	ENST00000398486		TCGA	RV	STAD	TCGA-CG-4466-01A	FKBP10	chr17	39969531	+	KRT40	chr17	39138715	-
In-frame	ENST00000170564	ENST00000221466		TCGA	RV	STAD	TCGA-HU-A4HD-01A	GPATCH1	chr19	33610023	+	FCGRT	chr19	50027764	+
In-frame	ENST00000170564	ENST00000426395		TCGA	RV	STAD	TCGA-HU-A4HD-01A	GPATCH1	chr19	33610023	+	FCGRT	chr19	50027764	+
5CDS-3UTR	ENST00000170564	ENST00000594823		TCGA	RV	STAD	TCGA-HU-A4HD-01A	GPATCH1	chr19	33610023	+	FCGRT	chr19	50027764	+
5CDS-intron	ENST00000170564	ENST00000599988		TCGA	RV	STAD	TCGA-HU-A4HD-01A	GPATCH1	chr19	33610023	+	FCGRT	chr19	50027764	+
5CDS-intron	ENST00000170564	ENST00000596975		TCGA	RV	STAD	TCGA-HU-A4HD-01A	GPATCH1	chr19	33610023	+	FCGRT	chr19	50027764	+
In-frame	ENST00000244007	ENST00000357410		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
In-frame	ENST00000244007	ENST00000327619		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000244007	ENST00000497428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000244007	ENST00000317304		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
In-frame	ENST00000373272	ENST00000357410		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
In-frame	ENST00000373272	ENST00000327619		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000373272	ENST00000497428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000373272	ENST00000317304		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
In-frame	ENST00000373271	ENST00000357410		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
In-frame	ENST00000373271	ENST00000327619		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000373271	ENST00000497428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000373271	ENST00000317304		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
intron-3CDS	ENST00000608689	ENST00000357410		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
intron-3CDS	ENST00000608689	ENST00000327619		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
intron-intron	ENST00000608689	ENST00000497428		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
intron-intron	ENST00000608689	ENST00000317304		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	PLCG1	chr20	39798909	+	EYA2	chr20	45797787	+
5CDS-intron	ENST00000310653	ENST00000377791		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000310653	ENST00000602637		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000336083	ENST00000377791		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000336083	ENST00000602637		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
5CDS-intron	ENST00000536566	ENST00000377791		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
5CDS-3UTR	ENST00000536566	ENST00000602637		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
intron-intron	ENST00000541588	ENST00000377791		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
intron-3UTR	ENST00000541588	ENST00000602637		TCGA	RV	STAD	TCGA-BR-4361-01A	RAB6A	chr11	73418465	-	HIST1H2AC	chr6	26138282	+
In-frame	ENST00000265631	ENST00000541515		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	LUC7L2	chr7	139030247	+
In-frame	ENST00000416240	ENST00000541515		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	LUC7L2	chr7	139030247	+
5UTR-3CDS	ENST00000542654	ENST00000541515		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	LUC7L2	chr7	139030247	+
intron-3CDS	ENST00000494085	ENST00000541515		TCGA	RV	STAD	TCGA-CG-4477-01A	SLC25A13	chr7	95926210	-	LUC7L2	chr7	139030247	+
Frame-shit	ENST00000396516	ENST00000020926		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZC3H7A	chr16	11862171	-	SYT13	chr11	45268063	-
Frame-shit	ENST00000355758	ENST00000020926		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZC3H7A	chr16	11862171	-	SYT13	chr11	45268063	-
intron-3CDS	ENST00000575984	ENST00000020926		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZC3H7A	chr16	11862171	-	SYT13	chr11	45268063	-
intron-3CDS	ENST00000575170	ENST00000020926		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZC3H7A	chr16	11862171	-	SYT13	chr11	45268063	-
In-frame	ENST00000295598	ENST00000369483		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000295598	ENST00000369486		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000295598	ENST00000318837		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000537345	ENST00000369483		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000537345	ENST00000369486		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000537345	ENST00000318837		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000369496	ENST00000369483		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000369496	ENST00000369486		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000369496	ENST00000318837		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
intron-3CDS	ENST00000491156	ENST00000369483		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
intron-3CDS	ENST00000491156	ENST00000369486		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
intron-3CDS	ENST00000491156	ENST00000318837		TCGA	RV	STAD	TCGA-BR-8289-01A	ATP1A1	chr1	116946597	+	IGSF3	chr1	117122499	-
In-frame	ENST00000536708	ENST00000376741		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CDK5RAP3	chr17	46055276	+	SP2	chr17	46002285	+
In-frame	ENST00000338399	ENST00000376741		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CDK5RAP3	chr17	46055276	+	SP2	chr17	46002285	+
intron-3CDS	ENST00000578663	ENST00000376741		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CDK5RAP3	chr17	46055276	+	SP2	chr17	46002285	+
intron-intron	ENST00000468410	ENST00000356767		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000468410	ENST00000393735		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000468410	ENST00000339444		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000468410	ENST00000393730		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000468410	ENST00000306312		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000468410	ENST00000432958		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000468410	ENST00000354356		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000468410	ENST00000393729		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000468410	ENST00000393727		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000468410	ENST00000393723		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-intron	ENST00000222574	ENST00000356767		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-intron	ENST00000222574	ENST00000393735		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-intron	ENST00000222574	ENST00000339444		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-intron	ENST00000222574	ENST00000393730		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-intron	ENST00000222574	ENST00000306312		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-intron	ENST00000222574	ENST00000432958		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-5UTR	ENST00000222574	ENST00000354356		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-5UTR	ENST00000222574	ENST00000393729		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-5UTR	ENST00000222574	ENST00000393727		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
5UTR-5UTR	ENST00000222574	ENST00000393723		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000485846	ENST00000356767		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000485846	ENST00000393735		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000485846	ENST00000339444		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000485846	ENST00000393730		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000485846	ENST00000306312		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000485846	ENST00000432958		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000485846	ENST00000354356		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000485846	ENST00000393729		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000485846	ENST00000393727		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000485846	ENST00000393723		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000461963	ENST00000356767		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000461963	ENST00000393735		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000461963	ENST00000339444		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000461963	ENST00000393730		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000461963	ENST00000306312		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-intron	ENST00000461963	ENST00000432958		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000461963	ENST00000354356		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000461963	ENST00000393729		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000461963	ENST00000393727		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
intron-5UTR	ENST00000461963	ENST00000393723		TCGA	RV	STAD	TCGA-CD-A486-01A	HBP1	chr7	106809630	+	SLC26A5	chr7	103019782	-
Frame-shit	ENST00000394997	ENST00000332981		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000394997	ENST00000555082		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000394997	ENST00000556245		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000337138	ENST00000332981		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000337138	ENST00000555082		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000337138	ENST00000556245		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000323441	ENST00000332981		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
5CDS-5UTR	ENST00000323441	ENST00000555082		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
5CDS-intron	ENST00000323441	ENST00000556245		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-3CDS	ENST00000557538	ENST00000332981		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-5UTR	ENST00000557538	ENST00000555082		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-intron	ENST00000557538	ENST00000556245		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-3CDS	ENST00000539097	ENST00000332981		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-5UTR	ENST00000539097	ENST00000555082		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-intron	ENST00000539097	ENST00000556245		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-3CDS	ENST00000557206	ENST00000332981		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-5UTR	ENST00000557206	ENST00000555082		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
intron-intron	ENST00000557206	ENST00000556245		TCGA	RV	STAD	TCGA-HU-A4GH-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61857943	+
Frame-shit	ENST00000334731	ENST00000377024		TCGA	RV	STAD	TCGA-BR-8060-01A	C9orf85	chr9	74562028	+	C9orf57	chr9	74667351	-
Frame-shit	ENST00000334731	ENST00000424431		TCGA	RV	STAD	TCGA-BR-8060-01A	C9orf85	chr9	74562028	+	C9orf57	chr9	74667351	-
Frame-shit	ENST00000377031	ENST00000377024		TCGA	RV	STAD	TCGA-BR-8060-01A	C9orf85	chr9	74562028	+	C9orf57	chr9	74667351	-
Frame-shit	ENST00000377031	ENST00000424431		TCGA	RV	STAD	TCGA-BR-8060-01A	C9orf85	chr9	74562028	+	C9orf57	chr9	74667351	-
Frame-shit	ENST00000486911	ENST00000377024		TCGA	RV	STAD	TCGA-BR-8060-01A	C9orf85	chr9	74562028	+	C9orf57	chr9	74667351	-
Frame-shit	ENST00000486911	ENST00000424431		TCGA	RV	STAD	TCGA-BR-8060-01A	C9orf85	chr9	74562028	+	C9orf57	chr9	74667351	-
5UTR-3CDS	ENST00000291572	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000291572	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000291572	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000291572	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3UTR	ENST00000291572	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-intron	ENST00000291572	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000398061	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3UTR	ENST00000398061	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-intron	ENST00000398061	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3CDS	ENST00000327505	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-3UTR	ENST00000327505	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
5UTR-intron	ENST00000327505	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398063	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000398063	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000398063	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000398058	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000398058	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000398058	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000546158	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000546158	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000546158	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000398081		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000468090		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000291565		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3CDS	ENST00000479117	ENST00000327574		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-3UTR	ENST00000479117	ENST00000476313		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
intron-intron	ENST00000479117	ENST00000467908		TCGA	RV	STAD	TCGA-CD-8535-01A	AGPAT3	chr21	45323900	+	PDXK	chr21	45153950	+
Frame-shit	ENST00000361924	ENST00000536378		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000361924	ENST00000231790		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000361924	ENST00000458205		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000361924	ENST00000539477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000361924	ENST00000455445		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000361924	ENST00000435176		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
5CDS-intron	ENST00000361924	ENST00000492474		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-3CDS	ENST00000435830	ENST00000536378		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-3CDS	ENST00000435830	ENST00000231790		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-3CDS	ENST00000435830	ENST00000458205		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-3CDS	ENST00000435830	ENST00000539477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-3CDS	ENST00000435830	ENST00000455445		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-3CDS	ENST00000435830	ENST00000435176		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
3UTR-intron	ENST00000435830	ENST00000492474		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000444882	ENST00000536378		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000444882	ENST00000231790		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000444882	ENST00000458205		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000444882	ENST00000539477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000444882	ENST00000455445		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000444882	ENST00000435176		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-intron	ENST00000444882	ENST00000492474		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000356847	ENST00000536378		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000356847	ENST00000231790		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000356847	ENST00000458205		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000356847	ENST00000539477		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000356847	ENST00000455445		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
Frame-shit	ENST00000356847	ENST00000435176		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
5CDS-intron	ENST00000356847	ENST00000492474		TCGA	RV	STAD	TCGA-BR-A4QI-01A	GOLGA4	chr3	37360685	+	MLH1	chr3	37061801	+
intron-3CDS	ENST00000486901	ENST00000357155		TCGA	RV	STAD	TCGA-HU-A4HD-01A	HSPG2	chr1	22222415	-	MYBPHL	chr1	109836871	-
intron-5UTR	ENST00000486901	ENST00000477962		TCGA	RV	STAD	TCGA-HU-A4HD-01A	HSPG2	chr1	22222415	-	MYBPHL	chr1	109836871	-
In-frame	ENST00000374695	ENST00000357155		TCGA	RV	STAD	TCGA-HU-A4HD-01A	HSPG2	chr1	22222415	-	MYBPHL	chr1	109836871	-
5CDS-5UTR	ENST00000374695	ENST00000477962		TCGA	RV	STAD	TCGA-HU-A4HD-01A	HSPG2	chr1	22222415	-	MYBPHL	chr1	109836871	-
intron-3CDS	ENST00000430507	ENST00000357155		TCGA	RV	STAD	TCGA-HU-A4HD-01A	HSPG2	chr1	22222415	-	MYBPHL	chr1	109836871	-
intron-5UTR	ENST00000430507	ENST00000477962		TCGA	RV	STAD	TCGA-HU-A4HD-01A	HSPG2	chr1	22222415	-	MYBPHL	chr1	109836871	-
5CDS-intron	ENST00000288235	ENST00000299092		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000288235	ENST00000561100		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
5CDS-intron	ENST00000288235	ENST00000543580		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
5CDS-5UTR	ENST00000288235	ENST00000560729		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
intron-intron	ENST00000558814	ENST00000299092		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
intron-intron	ENST00000558814	ENST00000561100		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
intron-intron	ENST00000558814	ENST00000543580		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
intron-5UTR	ENST00000558814	ENST00000560729		TCGA	RV	STAD	TCGA-CG-4444-01A	MYO1E	chr15	59510090	-	GPR176	chr15	40099459	-
5CDS-5UTR	ENST00000373825	ENST00000511642		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373825	ENST00000415497		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373825	ENST00000372988		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000373825	ENST00000510503		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373825	ENST00000511686		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373825	ENST00000372991		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373825	ENST00000372987		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000373825	ENST00000414200		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000423325	ENST00000511642		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000423325	ENST00000415497		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000423325	ENST00000372988		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000423325	ENST00000510503		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000423325	ENST00000511686		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000423325	ENST00000372991		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000423325	ENST00000372987		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000423325	ENST00000414200		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000373822	ENST00000511642		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000373822	ENST00000415497		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000373822	ENST00000372988		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000373822	ENST00000510503		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000373822	ENST00000511686		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000373822	ENST00000372991		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000373822	ENST00000372987		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000373822	ENST00000414200		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-5UTR	ENST00000373821	ENST00000511642		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-intron	ENST00000373821	ENST00000415497		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-5UTR	ENST00000373821	ENST00000372988		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-5UTR	ENST00000373821	ENST00000510503		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-intron	ENST00000373821	ENST00000511686		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-intron	ENST00000373821	ENST00000372991		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-intron	ENST00000373821	ENST00000372987		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
intron-intron	ENST00000373821	ENST00000414200		TCGA	RV	STAD	TCGA-VQ-A925-01A	SRPK1	chr6	35888245	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000355272	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000355272	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000356926	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000356926	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000350812	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000350812	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000345016	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000345016	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000590683	ENST00000436066		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000590683	ENST00000592810		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	AP3D1	chr19	2151238	-	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000081029	ENST00000381356		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000557540		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000555711		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000556885		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000554266		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000556351		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000556927		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-intron	ENST00000081029	ENST00000555151		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000556402		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000081029	ENST00000553788		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000381356		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000557540		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000555711		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000556885		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000554266		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000556351		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000556927		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-intron	ENST00000538315	ENST00000555151		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000556402		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
5CDS-5UTR	ENST00000538315	ENST00000553788		TCGA	RV	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27869391	+	LYRM5	chr12	25356854	+
Frame-shit	ENST00000357674	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000357674	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000357674	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000357674	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000357674	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000357674	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000314062	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000314062	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000314062	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000314062	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000314062	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000314062	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000346964	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000346964	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000346964	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000346964	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000346964	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000346964	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000419354	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000419354	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000419354	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000419354	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000419354	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000419354	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000452595	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000452595	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000452595	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000452595	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000452595	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-intron	ENST00000452595	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000422288	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000422288	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000422288	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000422288	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000422288	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000422288	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000448528	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000448528	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000448528	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000448528	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000448528	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000448528	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000443183	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000443183	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000443183	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000443183	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-3CDS	ENST00000443183	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
intron-intron	ENST00000443183	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000450955	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000450955	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000450955	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000450955	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000450955	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000450955	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000392382	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000392382	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000392382	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000392382	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000392382	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5CDS-intron	ENST00000392382	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5UTR-3CDS	ENST00000485409	ENST00000189978		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5UTR-3CDS	ENST00000485409	ENST00000374448		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5UTR-3CDS	ENST00000485409	ENST00000416899		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5UTR-3CDS	ENST00000485409	ENST00000374440		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5UTR-3CDS	ENST00000485409	ENST00000374439		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
5UTR-intron	ENST00000485409	ENST00000374438		TCGA	RV	STAD	TCGA-VQ-A91Q-01A	DLG1	chr3	197009550	-	MUSK	chr9	113457683	+
Frame-shit	ENST00000449098	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000449098	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000449098	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000449098	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000320084	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000320084	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000320084	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000320084	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000336053	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000336053	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000336053	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000336053	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000554969	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000554969	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000554969	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000554969	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556142	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556142	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556142	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000556142	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000554455	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000554455	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000554455	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000554455	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000430246	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000430246	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000430246	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000430246	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000553753	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000553753	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000553753	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000553753	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555914	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555914	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555914	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000555914	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555309	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555309	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555309	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000555309	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556628	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556628	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556628	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000556628	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555883	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555883	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000555883	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000555883	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556513	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556513	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000556513	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000556513	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000557201	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000557201	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000557201	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000557201	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000553300	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000553300	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000553300	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000553300	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000556897	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000556897	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000556897	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000556897	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000420743	ENST00000430710		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000420743	ENST00000399982		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
Frame-shit	ENST00000420743	ENST00000557364		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
5CDS-intron	ENST00000420743	ENST00000555962		TCGA	RV	STAD	TCGA-BR-A4QI-01A	HNRNPC	chr14	21698478	-	CHD8	chr14	21854335	-
In-frame	ENST00000269554	ENST00000225428		TCGA	RV	STAD	TCGA-BR-A4QI-01A	PIP4K2B	chr17	36933940	-	CWC25	chr17	36963229	-
In-frame	ENST00000269554	ENST00000536127		TCGA	RV	STAD	TCGA-BR-A4QI-01A	PIP4K2B	chr17	36933940	-	CWC25	chr17	36963229	-
5UTR-3CDS	ENST00000311500	ENST00000225428		TCGA	RV	STAD	TCGA-BR-A4QI-01A	PIP4K2B	chr17	36933940	-	CWC25	chr17	36963229	-
5UTR-3CDS	ENST00000311500	ENST00000536127		TCGA	RV	STAD	TCGA-BR-A4QI-01A	PIP4K2B	chr17	36933940	-	CWC25	chr17	36963229	-
Frame-shit	ENST00000425019	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000425019	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000425019	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000324219	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000324219	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000324219	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000350198	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000350198	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000350198	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000302217	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000302217	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000302217	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000413150	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000413150	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000413150	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000347699	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000347699	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000347699	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000456652	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
Frame-shit	ENST00000456652	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
5CDS-intron	ENST00000456652	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
intron-3CDS	ENST00000350878	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
intron-3CDS	ENST00000350878	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
intron-intron	ENST00000350878	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
intron-3CDS	ENST00000498066	ENST00000236273		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
intron-3CDS	ENST00000498066	ENST00000354361		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
intron-intron	ENST00000498066	ENST00000476231		TCGA	RV	STAD	TCGA-HU-A4H4-01A	MAP4K4	chr2	102315000	+	SYF2	chr1	25551591	-
In-frame	ENST00000330687	ENST00000424011		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000330687	ENST00000360086		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000330687	ENST00000562707		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000330687	ENST00000361909		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000460097		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000565666		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000567572		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000564060		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000330687	ENST00000565922		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000565003		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000568477		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000330687	ENST00000566121		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
In-frame	ENST00000394106	ENST00000424011		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000394106	ENST00000360086		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000394106	ENST00000562707		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000394106	ENST00000361909		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000460097		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000565666		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000567572		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000564060		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-intron	ENST00000394106	ENST00000565922		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000565003		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000568477		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
5CDS-5UTR	ENST00000394106	ENST00000566121		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-3CDS	ENST00000563952	ENST00000424011		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-intron	ENST00000563952	ENST00000360086		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-intron	ENST00000563952	ENST00000562707		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-intron	ENST00000563952	ENST00000361909		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000460097		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000565666		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000567572		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000564060		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-intron	ENST00000563952	ENST00000565922		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000565003		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000568477		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
intron-5UTR	ENST00000563952	ENST00000566121		TCGA	RV	STAD	TCGA-BR-8077-01A	CMTM4	chr16	66730243	-	CMTM3	chr16	66642212	+
Frame-shit	ENST00000399537	ENST00000425013		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000399537	ENST00000389902		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000399537	ENST00000469375		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000430969	ENST00000425013		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000430969	ENST00000389902		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000430969	ENST00000469375		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000399434	ENST00000469375		TCGA	RV	STAD	TCGA-CD-8524-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
5UTR-3CDS	ENST00000546079	ENST00000341505		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
5UTR-3CDS	ENST00000546079	ENST00000270279		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
In-frame	ENST00000541297	ENST00000341505		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
In-frame	ENST00000541297	ENST00000270279		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
In-frame	ENST00000337392	ENST00000341505		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
In-frame	ENST00000337392	ENST00000270279		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
intron-3CDS	ENST00000589158	ENST00000341505		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
intron-3CDS	ENST00000589158	ENST00000270279		TCGA	RV	STAD	TCGA-VQ-A8P3-01A	CLPTM1	chr19	45465332	+	CBLC	chr19	45293261	+
In-frame	ENST00000282344	ENST00000316334		TCGA	RV	STAD	TCGA-BR-4357-01A	USP12	chr13	27669738	-	LNX2	chr13	28134122	-
Frame-shit	ENST00000196489	ENST00000314391		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ZNF416	chr19	58089425	-	C19orf18	chr19	58478000	-
5UTR-3CDS	ENST00000343455	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
5UTR-intron	ENST00000343455	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
5UTR-intron	ENST00000343455	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-3CDS	ENST00000526495	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000526495	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000526495	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-3CDS	ENST00000393063	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000393063	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000393063	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-3CDS	ENST00000527416	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000527416	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000527416	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-3CDS	ENST00000527414	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000527414	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000527414	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-3CDS	ENST00000556045	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000556045	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000556045	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-3CDS	ENST00000541352	ENST00000298912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000541352	ENST00000557215		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-intron	ENST00000541352	ENST00000556441		TCGA	RV	STAD	TCGA-BR-A4QI-01A	DICER1	chr14	95623567	-	CLMN	chr14	95663031	-
intron-5UTR	ENST00000379441	ENST00000454682		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000379441	ENST00000550952		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000379441	ENST00000356769		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000379441	ENST00000552540		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000379441	ENST00000393891		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000379441	ENST00000548563		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000379441	ENST00000546392		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000379441	ENST00000551793		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000179765	ENST00000454682		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000179765	ENST00000550952		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000179765	ENST00000356769		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000179765	ENST00000552540		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000179765	ENST00000393891		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000179765	ENST00000548563		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000179765	ENST00000546392		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000179765	ENST00000551793		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000551812	ENST00000454682		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000551812	ENST00000550952		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000551812	ENST00000356769		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000551812	ENST00000552540		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000551812	ENST00000393891		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000551812	ENST00000548563		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000551812	ENST00000546392		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000551812	ENST00000551793		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-5UTR	ENST00000549884	ENST00000454682		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-intron	ENST00000549884	ENST00000550952		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-5UTR	ENST00000549884	ENST00000356769		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-intron	ENST00000549884	ENST00000552540		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-intron	ENST00000549884	ENST00000393891		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-intron	ENST00000549884	ENST00000548563		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-intron	ENST00000549884	ENST00000546392		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
5UTR-intron	ENST00000549884	ENST00000551793		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000553222	ENST00000454682		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000553222	ENST00000550952		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-5UTR	ENST00000553222	ENST00000356769		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000553222	ENST00000552540		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000553222	ENST00000393891		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000553222	ENST00000548563		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000553222	ENST00000546392		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
intron-intron	ENST00000553222	ENST00000551793		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57023909	-	NACA	chr12	57119237	-
In-frame	ENST00000263694	ENST00000178640		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000263694	ENST00000560591		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000263694	ENST00000395476		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000263694	ENST00000354498		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000263694	ENST00000340972		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-3CDS	ENST00000489853	ENST00000178640		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000489853	ENST00000560591		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000489853	ENST00000395476		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000489853	ENST00000354498		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000489853	ENST00000340972		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-3CDS	ENST00000373720	ENST00000178640		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000373720	ENST00000560591		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000373720	ENST00000395476		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000373720	ENST00000354498		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
intron-intron	ENST00000373720	ENST00000340972		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
Frame-shit	ENST00000446633	ENST00000178640		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000446633	ENST00000560591		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000446633	ENST00000395476		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000446633	ENST00000354498		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000446633	ENST00000340972		TCGA	RV	STAD	TCGA-HU-A4GF-01A	SNRNP40	chr1	31762101	-	MAP2K5	chr15	68040569	+
5CDS-intron	ENST00000264057	ENST00000538935		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000264057	ENST00000359570		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000264057	ENST00000450745		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000264057	ENST00000455936		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000264057	ENST00000474278		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000409813	ENST00000538935		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000409813	ENST00000359570		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000409813	ENST00000450745		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000409813	ENST00000455936		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5CDS-intron	ENST00000409813	ENST00000474278		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
intron-intron	ENST00000489613	ENST00000538935		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
intron-intron	ENST00000489613	ENST00000359570		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
intron-intron	ENST00000489613	ENST00000450745		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
intron-intron	ENST00000489613	ENST00000455936		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
intron-intron	ENST00000489613	ENST00000474278		TCGA	RV	STAD	TCGA-VQ-A8E0-01A	DGKD	chr2	234372929	+	INPP5D	chr2	234098496	+
5UTR-3CDS	ENST00000233154	ENST00000258455		TCGA	RV	STAD	TCGA-VQ-A925-01A	NCK2	chr2	106361595	+	MRPS9	chr2	105705442	+
5UTR-3CDS	ENST00000451463	ENST00000258455		TCGA	RV	STAD	TCGA-VQ-A925-01A	NCK2	chr2	106361595	+	MRPS9	chr2	105705442	+
intron-3CDS	ENST00000522586	ENST00000258455		TCGA	RV	STAD	TCGA-VQ-A925-01A	NCK2	chr2	106361595	+	MRPS9	chr2	105705442	+
intron-3CDS	ENST00000393349	ENST00000258455		TCGA	RV	STAD	TCGA-VQ-A925-01A	NCK2	chr2	106361595	+	MRPS9	chr2	105705442	+
In-frame	ENST00000254260	ENST00000244137		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
In-frame	ENST00000254260	ENST00000397032		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
In-frame	ENST00000254260	ENST00000436370		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5CDS-intron	ENST00000254260	ENST00000591968		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
Frame-shit	ENST00000400226	ENST00000244137		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
Frame-shit	ENST00000400226	ENST00000397032		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
Frame-shit	ENST00000400226	ENST00000436370		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5CDS-intron	ENST00000400226	ENST00000591968		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5UTR-3CDS	ENST00000588683	ENST00000244137		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5UTR-3CDS	ENST00000588683	ENST00000397032		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5UTR-3CDS	ENST00000588683	ENST00000436370		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5UTR-intron	ENST00000588683	ENST00000591968		TCGA	RV	STAD	TCGA-CD-A4MH-01A	RHPN2	chr19	33481420	-	PEPD	chr19	33984243	-
5UTR-3CDS	ENST00000378330	ENST00000389301		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-3CDS	ENST00000378330	ENST00000568369		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-5UTR	ENST00000378330	ENST00000567284		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000378330	ENST00000389302		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000378330	ENST00000563673		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000378330	ENST00000534992		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000378330	ENST00000543736		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-3CDS	ENST00000301030	ENST00000389301		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-3CDS	ENST00000301030	ENST00000568369		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-5UTR	ENST00000301030	ENST00000567284		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000301030	ENST00000389302		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000301030	ENST00000563673		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000301030	ENST00000534992		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
5UTR-intron	ENST00000301030	ENST00000543736		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-3CDS	ENST00000563291	ENST00000389301		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-3CDS	ENST00000563291	ENST00000568369		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-5UTR	ENST00000563291	ENST00000567284		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000563291	ENST00000389302		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000563291	ENST00000563673		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000563291	ENST00000534992		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000563291	ENST00000543736		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-3CDS	ENST00000567736	ENST00000389301		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-3CDS	ENST00000567736	ENST00000568369		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-5UTR	ENST00000567736	ENST00000567284		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000567736	ENST00000389302		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000567736	ENST00000563673		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000567736	ENST00000534992		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
intron-intron	ENST00000567736	ENST00000543736		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ANKRD11	chr16	89484692	-	FANCA	chr16	89838222	-
In-frame	ENST00000545844	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000545844	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000545844	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000545844	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000545844	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000545844	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000567887	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000567887	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000567887	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000567887	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000567887	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000567887	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000372915	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000372915	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000372915	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000372915	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000372915	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000372915	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000361689	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000361689	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000361689	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000361689	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000361689	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000361689	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000539005	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000539005	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000539005	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000539005	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000539005	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000539005	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000317713	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000317713	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000317713	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000317713	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000317713	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000317713	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000564288	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000564288	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000564288	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000564288	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000564288	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000564288	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000289893	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000289893	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000289893	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000289893	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
In-frame	ENST00000289893	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-intron	ENST00000289893	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000536367	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000536367	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000536367	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000536367	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000536367	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-intron	ENST00000536367	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000484793	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000484793	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000484793	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000484793	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000484793	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-intron	ENST00000484793	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000602421	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000602421	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000602421	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000602421	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000602421	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-intron	ENST00000602421	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000476350	ENST00000372572		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000476350	ENST00000372573		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000476350	ENST00000361346		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000476350	ENST00000361776		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-3CDS	ENST00000476350	ENST00000545068		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
intron-intron	ENST00000476350	ENST00000372571		TCGA	RV	STAD	TCGA-F1-A72C-01A	MACF1	chr1	39910507	+	FOXJ3	chr1	42664901	-
5CDS-5UTR	ENST00000309364	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000309364	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000309364	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000309364	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000359180	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000359180	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000359180	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000359180	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000317589	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000317589	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000317589	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000317589	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000355397	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000355397	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000355397	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000355397	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000429027	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000429027	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000429027	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000429027	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000539256	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000539256	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000539256	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000539256	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000299275	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000299275	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000299275	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000299275	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000538714	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000538714	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000538714	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000538714	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543806	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543806	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543806	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543806	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000424268	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000424268	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000424268	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000424268	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000540972	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000540972	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000540972	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000540972	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000510738	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000510738	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000510738	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
intron-5UTR	ENST00000510738	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	PLEKHA5	chr12	19285384	+	RERGL	chr12	18241890	-
Frame-shit	ENST00000335762	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000335762	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399655	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399655	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
intron-3CDS	ENST00000480911	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
intron-intron	ENST00000480911	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399644	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399644	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000344100	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000344100	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399638	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399638	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399629	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399629	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399597	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399597	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000327702	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000327702	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399621	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399621	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399649	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399649	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399637	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399637	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000402845	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000402845	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399591	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399591	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399641	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399641	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000347598	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000347598	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399606	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399606	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399595	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399595	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399601	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399601	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399603	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399603	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399634	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399634	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000399617	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000399617	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
Frame-shit	ENST00000406454	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000406454	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
intron-3CDS	ENST00000491104	ENST00000339766		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
intron-intron	ENST00000491104	ENST00000455827		TCGA	RV	STAD	TCGA-CD-A48C-01A	CACNA1C	chr12	2778201	+	CLEC2A	chr12	10051575	-
5CDS-intron	ENST00000361813	ENST00000368279		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
5CDS-intron	ENST00000361813	ENST00000368273		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
5CDS-intron	ENST00000361813	ENST00000368277		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
5CDS-intron	ENST00000361813	ENST00000565805		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
5CDS-intron	ENST00000361813	ENST00000567140		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000368267	ENST00000368279		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000368267	ENST00000368273		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000368267	ENST00000368277		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000368267	ENST00000565805		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000368267	ENST00000567140		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000489907	ENST00000368279		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000489907	ENST00000368273		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000489907	ENST00000368277		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000489907	ENST00000565805		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
intron-intron	ENST00000489907	ENST00000567140		TCGA	RV	STAD	TCGA-BR-8373-01A	SMG5	chr1	156235572	-	PMF1	chr1	156206079	+
Frame-shit	ENST00000601806	ENST00000598205		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000601806	ENST00000376970		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000601806	ENST00000425460		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000601806	ENST00000440075		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000601806	ENST00000601313		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000601806	ENST00000262269		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000601806	ENST00000596571		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000598205		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000376970		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000425460		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000440075		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000601313		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000262269		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000291281	ENST00000596571		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000598205		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000376970		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000425460		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000440075		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000601313		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000262269		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
In-frame	ENST00000433867	ENST00000596571		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000598205		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000376970		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000425460		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000440075		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000601313		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000262269		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000600194	ENST00000596571		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000598205		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000376970		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000425460		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000440075		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000601313		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000262269		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
Frame-shit	ENST00000595515	ENST00000596571		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000598205		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000376970		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000425460		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000440075		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000601313		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000262269		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000593492	ENST00000596571		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PRKD2	chr19	47207426	-	MYH14	chr19	50747499	+
intron-3CDS	ENST00000548241	ENST00000483405		TCGA	RV	STAD	TCGA-MX-A666-01A	ANKRD52	chr12	56649568	-	ASPHD1	chr16	29917109	+
intron-3CDS	ENST00000548241	ENST00000308748		TCGA	RV	STAD	TCGA-MX-A666-01A	ANKRD52	chr12	56649568	-	ASPHD1	chr16	29917109	+
In-frame	ENST00000267116	ENST00000483405		TCGA	RV	STAD	TCGA-MX-A666-01A	ANKRD52	chr12	56649568	-	ASPHD1	chr16	29917109	+
In-frame	ENST00000267116	ENST00000308748		TCGA	RV	STAD	TCGA-MX-A666-01A	ANKRD52	chr12	56649568	-	ASPHD1	chr16	29917109	+
Frame-shit	ENST00000265734	ENST00000265742		TCGA	RV	STAD	TCGA-RD-A8N6-01A	CDK6	chr7	92462405	-	ANKIB1	chr7	91936673	+
5CDS-intron	ENST00000265734	ENST00000486698		TCGA	RV	STAD	TCGA-RD-A8N6-01A	CDK6	chr7	92462405	-	ANKIB1	chr7	91936673	+
In-frame	ENST00000424848	ENST00000265742		TCGA	RV	STAD	TCGA-RD-A8N6-01A	CDK6	chr7	92462405	-	ANKIB1	chr7	91936673	+
5CDS-intron	ENST00000424848	ENST00000486698		TCGA	RV	STAD	TCGA-RD-A8N6-01A	CDK6	chr7	92462405	-	ANKIB1	chr7	91936673	+
intron-3CDS	ENST00000491250	ENST00000265742		TCGA	RV	STAD	TCGA-RD-A8N6-01A	CDK6	chr7	92462405	-	ANKIB1	chr7	91936673	+
intron-intron	ENST00000491250	ENST00000486698		TCGA	RV	STAD	TCGA-RD-A8N6-01A	CDK6	chr7	92462405	-	ANKIB1	chr7	91936673	+
Frame-shit	ENST00000327367	ENST00000288840		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
5CDS-intron	ENST00000327367	ENST00000457357		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
5CDS-intron	ENST00000327367	ENST00000338426		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000559092	ENST00000288840		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000559092	ENST00000457357		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000559092	ENST00000338426		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000540846	ENST00000288840		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000540846	ENST00000457357		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000540846	ENST00000338426		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000439724	ENST00000288840		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000439724	ENST00000457357		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000439724	ENST00000338426		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-3CDS	ENST00000537194	ENST00000288840		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000537194	ENST00000457357		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
intron-intron	ENST00000537194	ENST00000338426		TCGA	RV	STAD	TCGA-BR-8289-01A	SMAD3	chr15	67358698	+	SMAD6	chr15	67073335	+
In-frame	ENST00000369061	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369061	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000369061	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000357555	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000357555	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000358487	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000358487	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000356226	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000356226	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369060	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000369060	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000369059	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000369059	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000346997	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000346997	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000457416	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000457416	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000351936	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000351936	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000360144	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000360144	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
In-frame	ENST00000369056	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000369056	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000490349	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-intron	ENST00000490349	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-3CDS	ENST00000359354	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
intron-intron	ENST00000359354	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000369005		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000513429		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000515273		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000515603		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000453444		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000358010		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000334433		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000369001		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000369000		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000360561		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000368999		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000369004		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
Frame-shit	ENST00000478859	ENST00000260733		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5CDS-intron	ENST00000478859	ENST00000493951		TCGA	RV	STAD	TCGA-BR-8080-01A	FGFR2	chr10	123243212	-	TACC2	chr10	123996910	+
5UTR-5UTR	ENST00000340513	ENST00000352035		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000340513	ENST00000590151		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000340513	ENST00000353196		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000340513	ENST00000537919		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000340513	ENST00000393896		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-intron	ENST00000340513	ENST00000588779		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000300403	ENST00000352035		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000300403	ENST00000590151		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000300403	ENST00000353196		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000300403	ENST00000537919		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-5UTR	ENST00000300403	ENST00000393896		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
5UTR-intron	ENST00000300403	ENST00000588779		TCGA	RV	STAD	TCGA-BR-8077-01A	TPX2	chr20	30330450	+	ACLY	chr17	40070153	-
Frame-shit	ENST00000583610	ENST00000360317		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000394175		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000309481		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000520542		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000418519		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000583610	ENST00000394179		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000360317		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000394175		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000309481		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000520542		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000418519		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000394294	ENST00000394179		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000360317		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000394175		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000309481		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000520542		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000418519		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000264658	ENST00000394179		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000360317		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000394175		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000309481		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000520542		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000418519		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
intron-3CDS	ENST00000577399	ENST00000394179		TCGA	RV	STAD	TCGA-BR-8060-01A	FBXL20	chr17	37557614	-	GSDMB	chr17	38068750	-
Frame-shit	ENST00000412504	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000412504	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000412504	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000072516	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000072516	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000072516	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000443369	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000443369	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000443369	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000439062	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000439062	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000439062	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000447382	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000447382	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000447382	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
In-frame	ENST00000422485	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
In-frame	ENST00000422485	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000422485	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000434491	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000434491	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000434491	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
In-frame	ENST00000422940	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
In-frame	ENST00000422940	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000422940	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000317757	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
Frame-shit	ENST00000317757	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
5CDS-intron	ENST00000317757	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000465496	ENST00000433971		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000465496	ENST00000345063		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
intron-intron	ENST00000465496	ENST00000488841		TCGA	RV	STAD	TCGA-VQ-A92D-01A	IL1RAP	chr3	190347287	+	TPRG1	chr3	189028175	+
intron-3CDS	ENST00000263377	ENST00000337859		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-intron	ENST00000263377	ENST00000544130		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-3UTR	ENST00000263377	ENST00000468120		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-3CDS	ENST00000371835	ENST00000337859		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-intron	ENST00000371835	ENST00000544130		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-3UTR	ENST00000371835	ENST00000468120		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
5UTR-3CDS	ENST00000360016	ENST00000337859		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
5UTR-intron	ENST00000360016	ENST00000544130		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
5UTR-3UTR	ENST00000360016	ENST00000468120		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-3CDS	ENST00000602230	ENST00000337859		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-intron	ENST00000602230	ENST00000544130		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
intron-3UTR	ENST00000602230	ENST00000468120		TCGA	RV	STAD	TCGA-HU-A4GH-01A	BRD4	chr19	15443101	-	ZC3H15	chr2	187367223	+
Frame-shit	ENST00000367042	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000367042	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000367042	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000354848	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000354848	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000354848	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
intron-3CDS	ENST00000441839	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
intron-3CDS	ENST00000441839	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
intron-intron	ENST00000441839	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000322875	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000322875	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000322875	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000367041	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000367041	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000367041	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000358170	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000358170	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000358170	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
intron-3CDS	ENST00000322918	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
intron-3CDS	ENST00000322918	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
intron-intron	ENST00000322918	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000361067	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000361067	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000361067	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000367047	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000367047	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000367047	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000357714	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000357714	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000357714	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
3UTR-3CDS	ENST00000469535	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
3UTR-3CDS	ENST00000469535	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
3UTR-intron	ENST00000469535	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000360212	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000360212	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000360212	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000480003	ENST00000294981		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000480003	ENST00000367103		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
5CDS-intron	ENST00000480003	ENST00000479009		TCGA	RV	STAD	TCGA-CG-4449-01A	CD46	chr1	207959027	+	MAPKAPK2	chr1	206902055	+
Frame-shit	ENST00000263280	ENST00000264552		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
Frame-shit	ENST00000263280	ENST00000589978		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
5CDS-intron	ENST00000263280	ENST00000592570		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
Frame-shit	ENST00000391910	ENST00000264552		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
Frame-shit	ENST00000391910	ENST00000589978		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
5CDS-intron	ENST00000391910	ENST00000592570		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
Frame-shit	ENST00000539396	ENST00000264552		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
Frame-shit	ENST00000539396	ENST00000589978		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
5CDS-intron	ENST00000539396	ENST00000592570		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
intron-3CDS	ENST00000594357	ENST00000264552		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
intron-3CDS	ENST00000594357	ENST00000589978		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
intron-intron	ENST00000594357	ENST00000592570		TCGA	RV	STAD	TCGA-HU-A4H2-01A	STRN4	chr19	47233989	-	UBE2S	chr19	55918330	-
5CDS-5UTR	ENST00000273038	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000273038	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000273038	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000273038	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000273038	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000273038	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000430365	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000430365	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000430365	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000430365	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000430365	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000430365	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000404339	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000404339	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000404339	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5UTR-intron	ENST00000404339	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5UTR-intron	ENST00000404339	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
5UTR-5UTR	ENST00000404339	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000480288	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000480288	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000480288	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000413604	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000413604	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000413604	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000413604	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000413604	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000413604	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000451674	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000451674	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000451674	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000314124		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000435575		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000435218		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000424529	ENST00000476331		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-intron	ENST00000424529	ENST00000431022		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
intron-5UTR	ENST00000424529	ENST00000264728		TCGA	RV	STAD	TCGA-VQ-A925-01A	VGLL4	chr3	11744445	-	TMEM40	chr3	12791339	-
Frame-shit	ENST00000394303	ENST00000476049		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
Frame-shit	ENST00000394303	ENST00000394052		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
Frame-shit	ENST00000394310	ENST00000476049		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
Frame-shit	ENST00000394310	ENST00000394052		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
Frame-shit	ENST00000344140	ENST00000476049		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
Frame-shit	ENST00000344140	ENST00000394052		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
5UTR-3CDS	ENST00000582877	ENST00000476049		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
5UTR-3CDS	ENST00000582877	ENST00000394052		TCGA	RV	STAD	TCGA-VQ-A92D-01A	CACNB1	chr17	37347727	-	KRT222	chr17	38812882	-
In-frame	ENST00000261170	ENST00000228936		TCGA	RV	STAD	TCGA-BR-8060-01A	GUCY2C	chr12	14781580	-	ART4	chr12	14982396	-
5CDS-intron	ENST00000291527	ENST00000354185		TCGA	RV	STAD	TCGA-BR-8687-01A	TFF1	chr21	43782391	-	DDX21	chr10	70723858	+
Frame-shit	ENST00000261168	ENST00000262178		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000261168	ENST00000377633		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000261168	ENST00000402066		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
5CDS-intron	ENST00000261168	ENST00000421760		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
In-frame	ENST00000543189	ENST00000262178		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
In-frame	ENST00000543189	ENST00000377633		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
In-frame	ENST00000543189	ENST00000402066		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
5CDS-intron	ENST00000543189	ENST00000421760		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000536444	ENST00000262178		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000536444	ENST00000377633		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000536444	ENST00000402066		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
5CDS-intron	ENST00000536444	ENST00000421760		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000544627	ENST00000262178		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000544627	ENST00000377633		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000544627	ENST00000402066		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
5CDS-intron	ENST00000544627	ENST00000421760		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
intron-3CDS	ENST00000541654	ENST00000262178		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
intron-3CDS	ENST00000541654	ENST00000377633		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
intron-3CDS	ENST00000541654	ENST00000402066		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
intron-intron	ENST00000541654	ENST00000421760		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000540793	ENST00000262178		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000540793	ENST00000377633		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
Frame-shit	ENST00000540793	ENST00000402066		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
5CDS-intron	ENST00000540793	ENST00000421760		TCGA	RV	STAD	TCGA-BR-A4QI-01A	ATF7IP	chr12	14634119	+	VIPR2	chr7	158824560	-
In-frame	ENST00000277165	ENST00000427277		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000277165	ENST00000297954		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-3UTR	ENST00000277165	ENST00000395475		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000277165	ENST00000356055		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000277165	ENST00000349097		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000277165	ENST00000395477		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-intron	ENST00000277165	ENST00000471076		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000375389	ENST00000427277		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000375389	ENST00000297954		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-3UTR	ENST00000375389	ENST00000395475		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000375389	ENST00000356055		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000375389	ENST00000349097		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000375389	ENST00000395477		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-intron	ENST00000375389	ENST00000471076		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000340893	ENST00000427277		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000340893	ENST00000297954		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-3UTR	ENST00000340893	ENST00000395475		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000340893	ENST00000356055		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000340893	ENST00000349097		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000340893	ENST00000395477		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-intron	ENST00000340893	ENST00000471076		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000333936	ENST00000427277		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000333936	ENST00000297954		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-3UTR	ENST00000333936	ENST00000395475		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000333936	ENST00000356055		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000333936	ENST00000349097		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-5UTR	ENST00000333936	ENST00000395477		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
5CDS-intron	ENST00000333936	ENST00000471076		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-3CDS	ENST00000475933	ENST00000427277		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-3CDS	ENST00000475933	ENST00000297954		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-3UTR	ENST00000475933	ENST00000395475		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-5UTR	ENST00000475933	ENST00000356055		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-5UTR	ENST00000475933	ENST00000349097		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-5UTR	ENST00000475933	ENST00000395477		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
intron-intron	ENST00000475933	ENST00000471076		TCGA	RV	STAD	TCGA-HU-A4GH-01A	FAM120A	chr9	96261168	+	WNK2	chr9	96030909	+
In-frame	ENST00000511181	ENST00000510496		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
In-frame	ENST00000511181	ENST00000389156		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
5CDS-3UTR	ENST00000511181	ENST00000380515		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
In-frame	ENST00000261416	ENST00000510496		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
In-frame	ENST00000261416	ENST00000389156		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
5CDS-3UTR	ENST00000261416	ENST00000380515		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3CDS	ENST00000513539	ENST00000510496		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3CDS	ENST00000513539	ENST00000389156		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3UTR	ENST00000513539	ENST00000380515		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3CDS	ENST00000509579	ENST00000510496		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3CDS	ENST00000509579	ENST00000389156		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3UTR	ENST00000509579	ENST00000380515		TCGA	RV	STAD	TCGA-BR-8373-01A	HEXB	chr5	74001145	+	FAM169A	chr5	74078959	-
intron-3CDS	ENST00000372189	ENST00000418543		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
intron-3CDS	ENST00000372189	ENST00000242796		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
Frame-shit	ENST00000372195	ENST00000418543		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
Frame-shit	ENST00000372195	ENST00000242796		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
intron-3CDS	ENST00000372190	ENST00000418543		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
intron-3CDS	ENST00000372190	ENST00000242796		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
intron-3CDS	ENST00000481260	ENST00000418543		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
intron-3CDS	ENST00000481260	ENST00000242796		TCGA	RV	STAD	TCGA-BR-7716-01A	RAPGEF1	chr9	134615157	-	WDR83	chr19	12783661	+
Frame-shit	ENST00000374023	ENST00000314787		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
Frame-shit	ENST00000374023	ENST00000426190		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
Frame-shit	ENST00000374023	ENST00000519088		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
5CDS-intron	ENST00000374023	ENST00000520018		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
intron-3CDS	ENST00000374026	ENST00000314787		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
intron-3CDS	ENST00000374026	ENST00000426190		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
intron-3CDS	ENST00000374026	ENST00000519088		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
intron-intron	ENST00000374026	ENST00000520018		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
Frame-shit	ENST00000374021	ENST00000314787		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
In-frame	ENST00000374021	ENST00000426190		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
In-frame	ENST00000374021	ENST00000519088		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
5CDS-intron	ENST00000374021	ENST00000520018		TCGA	RV	STAD	TCGA-VQ-AA6I-01A	C6orf106	chr6	34614378	-	PINX1	chr8	10623426	-
In-frame	ENST00000288670	ENST00000225899		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	FMNL2	chr2	153378540	+	KRT32	chr17	39616491	-
intron-3CDS	ENST00000475377	ENST00000225899		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	FMNL2	chr2	153378540	+	KRT32	chr17	39616491	-
intron-3CDS	ENST00000497192	ENST00000225899		TCGA	RV	STAD	TCGA-R5-A7ZE-01B	FMNL2	chr2	153378540	+	KRT32	chr17	39616491	-
5UTR-5UTR	ENST00000378330	ENST00000360150		TCGA	RV	STAD	TCGA-CD-8524-01A	ANKRD11	chr16	89556653	-	ERGIC2	chr12	29524603	-
5UTR-5UTR	ENST00000301030	ENST00000360150		TCGA	RV	STAD	TCGA-CD-8524-01A	ANKRD11	chr16	89556653	-	ERGIC2	chr12	29524603	-
intron-5UTR	ENST00000563291	ENST00000360150		TCGA	RV	STAD	TCGA-CD-8524-01A	ANKRD11	chr16	89556653	-	ERGIC2	chr12	29524603	-
intron-5UTR	ENST00000567736	ENST00000360150		TCGA	RV	STAD	TCGA-CD-8524-01A	ANKRD11	chr16	89556653	-	ERGIC2	chr12	29524603	-
5CDS-intron	ENST00000268459	ENST00000564044		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
5CDS-5UTR	ENST00000268459	ENST00000394697		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
5CDS-5UTR	ENST00000268459	ENST00000538642		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
5CDS-5UTR	ENST00000268459	ENST00000566433		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
5CDS-5UTR	ENST00000268459	ENST00000537579		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
5CDS-5UTR	ENST00000268459	ENST00000254235		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
3UTR-intron	ENST00000564336	ENST00000564044		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
3UTR-5UTR	ENST00000564336	ENST00000394697		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
3UTR-5UTR	ENST00000564336	ENST00000538642		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
3UTR-5UTR	ENST00000564336	ENST00000566433		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
3UTR-5UTR	ENST00000564336	ENST00000537579		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
3UTR-5UTR	ENST00000564336	ENST00000254235		TCGA	RV	STAD	TCGA-BR-8678-01A	NKD1	chr16	50583466	+	ADCY7	chr16	50321823	+
Frame-shit	ENST00000325144	ENST00000402676		TCGA	RV	STAD	TCGA-HU-A4H8-01A	ZBTB2	chr6	151694600	-	AKAP12	chr6	151669846	+
Frame-shit	ENST00000325144	ENST00000253332		TCGA	RV	STAD	TCGA-HU-A4H8-01A	ZBTB2	chr6	151694600	-	AKAP12	chr6	151669846	+
Frame-shit	ENST00000325144	ENST00000354675		TCGA	RV	STAD	TCGA-HU-A4H8-01A	ZBTB2	chr6	151694600	-	AKAP12	chr6	151669846	+
Frame-shit	ENST00000325144	ENST00000359755		TCGA	RV	STAD	TCGA-HU-A4H8-01A	ZBTB2	chr6	151694600	-	AKAP12	chr6	151669846	+
5CDS-3UTR	ENST00000325144	ENST00000490177		TCGA	RV	STAD	TCGA-HU-A4H8-01A	ZBTB2	chr6	151694600	-	AKAP12	chr6	151669846	+
5UTR-intron	ENST00000474874	ENST00000418089		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000474874	ENST00000413720		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000474874	ENST00000367536		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000474874	ENST00000367535		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000474874	ENST00000469280		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000377482	ENST00000418089		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000377482	ENST00000413720		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000377482	ENST00000367536		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000377482	ENST00000367535		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000377482	ENST00000469280		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
intron-intron	ENST00000467067	ENST00000418089		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
intron-intron	ENST00000467067	ENST00000413720		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
intron-intron	ENST00000467067	ENST00000367536		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
intron-intron	ENST00000467067	ENST00000367535		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
intron-intron	ENST00000467067	ENST00000469280		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000469499	ENST00000418089		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000469499	ENST00000413720		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000469499	ENST00000367536		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000469499	ENST00000367535		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
5UTR-intron	ENST00000469499	ENST00000469280		TCGA	RV	STAD	TCGA-VQ-A8E7-01B	ERRFI1	chr1	8086218	-	NCF2	chr1	183542427	-
In-frame	ENST00000404816	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000354476	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000390003	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000418533	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000402934	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000404525	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000407925	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
intron-3CDS	ENST00000272273	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
intron-3CDS	ENST00000498013	ENST00000238831		TCGA	RV	STAD	TCGA-BR-A4QI-01A	LTBP1	chr2	33413918	+	YIPF4	chr2	32526451	+
In-frame	ENST00000358432	ENST00000375592		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	EPHA2	chr1	16474873	-	FBXO42	chr1	16583254	-
5CDS-intron	ENST00000358432	ENST00000478089		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	EPHA2	chr1	16474873	-	FBXO42	chr1	16583254	-
In-frame	ENST00000461614	ENST00000375592		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	EPHA2	chr1	16474873	-	FBXO42	chr1	16583254	-
5CDS-intron	ENST00000461614	ENST00000478089		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	EPHA2	chr1	16474873	-	FBXO42	chr1	16583254	-
In-frame	ENST00000258991	ENST00000336308		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000258991	ENST00000578232		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000258991	ENST00000544210		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000258991	ENST00000394250		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000258991	ENST00000580611		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
In-frame	ENST00000583097	ENST00000336308		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000583097	ENST00000578232		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000583097	ENST00000544210		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000583097	ENST00000394250		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000583097	ENST00000580611		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
In-frame	ENST00000584379	ENST00000336308		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000584379	ENST00000578232		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000584379	ENST00000544210		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-3UTR	ENST00000584379	ENST00000394250		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
5CDS-intron	ENST00000584379	ENST00000580611		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
intron-3CDS	ENST00000581812	ENST00000336308		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000581812	ENST00000578232		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000581812	ENST00000544210		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
intron-3UTR	ENST00000581812	ENST00000394250		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
intron-intron	ENST00000581812	ENST00000580611		TCGA	RV	STAD	TCGA-HU-A4HD-01A	TEX2	chr17	62270919	-	STARD3	chr17	37813261	+
Frame-shit	ENST00000263253	ENST00000301923		TCGA	RV	STAD	TCGA-CD-A486-01A	EP300	chr22	41489102	+	TNRC6B	chr22	40642019	+
Frame-shit	ENST00000263253	ENST00000402203		TCGA	RV	STAD	TCGA-CD-A486-01A	EP300	chr22	41489102	+	TNRC6B	chr22	40642019	+
Frame-shit	ENST00000263253	ENST00000454349		TCGA	RV	STAD	TCGA-CD-A486-01A	EP300	chr22	41489102	+	TNRC6B	chr22	40642019	+
Frame-shit	ENST00000263253	ENST00000335727		TCGA	RV	STAD	TCGA-CD-A486-01A	EP300	chr22	41489102	+	TNRC6B	chr22	40642019	+
5CDS-intron	ENST00000263253	ENST00000497559		TCGA	RV	STAD	TCGA-CD-A486-01A	EP300	chr22	41489102	+	TNRC6B	chr22	40642019	+
5CDS-5UTR	ENST00000398645	ENST00000393946		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-5UTR	ENST00000398645	ENST00000525457		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-5UTR	ENST00000398645	ENST00000527043		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-3UTR	ENST00000398645	ENST00000526281		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-5UTR	ENST00000529006	ENST00000393946		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-5UTR	ENST00000529006	ENST00000525457		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-5UTR	ENST00000529006	ENST00000527043		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
5CDS-3UTR	ENST00000529006	ENST00000526281		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000526258	ENST00000393946		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000526258	ENST00000525457		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000526258	ENST00000527043		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-3UTR	ENST00000526258	ENST00000526281		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000308783	ENST00000393946		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000308783	ENST00000525457		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000308783	ENST00000527043		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-3UTR	ENST00000308783	ENST00000526281		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000530342	ENST00000393946		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000530342	ENST00000525457		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-5UTR	ENST00000530342	ENST00000527043		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-3UTR	ENST00000530342	ENST00000526281		TCGA	RV	STAD	TCGA-BR-8289-01A	KDM2A	chr11	66888829	+	SYT12	chr11	66797593	+
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000376788		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-intron	ENST00000405201	ENST00000546215		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404621	ENST00000376788		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404621	ENST00000546215		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404121	ENST00000376788		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404121	ENST00000546215		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000356219	ENST00000376788		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000356219	ENST00000546215		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000397355	ENST00000376788		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000397355	ENST00000546215		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000429285	ENST00000376788		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000429285	ENST00000546215		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	STAD	TCGA-CD-A4MH-01A	NCOR2	chr12	125020111	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000328735	ENST00000437219		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000328735	ENST00000309182		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000328735	ENST00000446363		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000328735	ENST00000419248		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000328735	ENST00000409644		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000328735	ENST00000545662		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000330333	ENST00000437219		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000330333	ENST00000309182		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000330333	ENST00000446363		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000330333	ENST00000419248		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000330333	ENST00000409644		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000330333	ENST00000545662		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000347667	ENST00000437219		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000347667	ENST00000309182		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000347667	ENST00000446363		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000347667	ENST00000419248		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000347667	ENST00000409644		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
Frame-shit	ENST00000347667	ENST00000545662		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
intron-3CDS	ENST00000466122	ENST00000437219		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
intron-3CDS	ENST00000466122	ENST00000309182		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
intron-3CDS	ENST00000466122	ENST00000446363		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
intron-3CDS	ENST00000466122	ENST00000419248		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
intron-3CDS	ENST00000466122	ENST00000409644		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
intron-3CDS	ENST00000466122	ENST00000545662		TCGA	RV	STAD	TCGA-BR-7901-01A	BACE2	chr21	42540502	+	WDR81	chr17	1638866	+
5UTR-3CDS	ENST00000494188	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5UTR-3CDS	ENST00000494188	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5UTR-3CDS	ENST00000494188	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5UTR-5UTR	ENST00000494188	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409892	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409892	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409892	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5CDS-5UTR	ENST00000409892	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409784	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409784	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409784	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5CDS-5UTR	ENST00000409784	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000398529	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000398529	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000398529	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5CDS-5UTR	ENST00000398529	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409751	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409751	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000409751	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5CDS-5UTR	ENST00000409751	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
intron-3CDS	ENST00000260638	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
intron-3CDS	ENST00000260638	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
intron-3CDS	ENST00000260638	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
intron-5UTR	ENST00000260638	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000356214	ENST00000357429		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000356214	ENST00000397100		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
Frame-shit	ENST00000356214	ENST00000397098		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
5CDS-5UTR	ENST00000356214	ENST00000488073		TCGA	RV	STAD	TCGA-BR-8289-01A	RAB1A	chr2	65357027	-	C7orf50	chr7	1040187	-
In-frame	ENST00000335209	ENST00000427718		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
In-frame	ENST00000335209	ENST00000330622		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
5CDS-intron	ENST00000335209	ENST00000549689		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
In-frame	ENST00000541210	ENST00000427718		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
In-frame	ENST00000541210	ENST00000330622		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
5CDS-intron	ENST00000541210	ENST00000549689		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
In-frame	ENST00000392545	ENST00000427718		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
In-frame	ENST00000392545	ENST00000330622		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
5CDS-intron	ENST00000392545	ENST00000549689		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
intron-3CDS	ENST00000535198	ENST00000427718		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
intron-3CDS	ENST00000535198	ENST00000330622		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
intron-intron	ENST00000535198	ENST00000549689		TCGA	RV	STAD	TCGA-BR-A452-01A	TESC	chr12	117484364	-	FBXO21	chr12	117584082	-
In-frame	ENST00000324856	ENST00000374168		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000324856	ENST00000374166		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000324856	ENST00000526792		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000324856	ENST00000374162		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000324856	ENST00000530003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000324856	ENST00000531382		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
5CDS-intron	ENST00000324856	ENST00000488985		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000457599	ENST00000374168		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000457599	ENST00000374166		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000457599	ENST00000526792		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000457599	ENST00000374162		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000457599	ENST00000530003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000457599	ENST00000531382		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
5CDS-intron	ENST00000457599	ENST00000488985		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000374152	ENST00000374168		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000374152	ENST00000374166		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000374152	ENST00000526792		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000374152	ENST00000374162		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000374152	ENST00000530003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000374152	ENST00000531382		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
5CDS-intron	ENST00000374152	ENST00000488985		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000540690	ENST00000374168		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000540690	ENST00000374166		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000540690	ENST00000526792		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000540690	ENST00000374162		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000540690	ENST00000530003		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000540690	ENST00000531382		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
5CDS-intron	ENST00000540690	ENST00000488985		TCGA	RV	STAD	TCGA-HU-A4GH-01A	ARID1A	chr1	27102198	+	RPS6KA1	chr1	26897940	+
In-frame	ENST00000344293	ENST00000356708		TCGA	RV	STAD	TCGA-IN-A6RI-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7840953	+
5CDS-3UTR	ENST00000344293	ENST00000493053		TCGA	RV	STAD	TCGA-IN-A6RI-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7840953	+
5CDS-3UTR	ENST00000344293	ENST00000541227		TCGA	RV	STAD	TCGA-IN-A6RI-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7840953	+
5CDS-3UTR	ENST00000344293	ENST00000335698		TCGA	RV	STAD	TCGA-IN-A6RI-01A	TAF3	chr10	7866523	+	ATP5C1	chr10	7840953	+
In-frame	ENST00000218004	ENST00000328300		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000218004	ENST00000361603		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
5CDS-intron	ENST00000218004	ENST00000477429		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000372107	ENST00000328300		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000372107	ENST00000361603		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
5CDS-intron	ENST00000372107	ENST00000477429		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000372106	ENST00000328300		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000372106	ENST00000361603		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
5CDS-intron	ENST00000372106	ENST00000477429		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000372103	ENST00000328300		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000372103	ENST00000361603		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
5CDS-intron	ENST00000372103	ENST00000477429		TCGA	RV	STAD	TCGA-CD-A48C-01A	NXT2	chrX	108784848	+	COL4A5	chrX	107929261	+
In-frame	ENST00000371518	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000371518	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000371518	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
5CDS-intron	ENST00000371518	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000361387	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000361387	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000361387	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
5CDS-intron	ENST00000361387	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-3CDS	ENST00000477786	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-3CDS	ENST00000477786	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-3CDS	ENST00000477786	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-intron	ENST00000477786	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-3CDS	ENST00000371523	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-3CDS	ENST00000371523	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-3CDS	ENST00000371523	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
intron-intron	ENST00000371523	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000346617	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000346617	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000346617	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
5CDS-intron	ENST00000346617	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000371515	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000371515	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000371515	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
5CDS-intron	ENST00000371515	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000216923	ENST00000262982		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000216923	ENST00000542325		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
In-frame	ENST00000216923	ENST00000396192		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
5CDS-intron	ENST00000216923	ENST00000469700		TCGA	RV	STAD	TCGA-RD-A8MW-01A	ZFP64	chr20	50808130	-	CSE1L	chr20	47700563	+
Frame-shit	ENST00000585892	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
5CDS-5UTR	ENST00000585892	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
Frame-shit	ENST00000314646	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
5CDS-5UTR	ENST00000314646	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
Frame-shit	ENST00000359692	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
5CDS-5UTR	ENST00000359692	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
Frame-shit	ENST00000389253	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
5CDS-5UTR	ENST00000389253	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
Frame-shit	ENST00000355667	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
5CDS-5UTR	ENST00000355667	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
Frame-shit	ENST00000408974	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
5CDS-5UTR	ENST00000408974	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
intron-3CDS	ENST00000591819	ENST00000309469		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000591819	ENST00000540862		TCGA	RV	STAD	TCGA-BR-7716-01A	DNM2	chr19	10897382	+	ATG4D	chr19	10662573	+
intron-5UTR	ENST00000359930	ENST00000469379		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-3UTR	ENST00000359930	ENST00000331808		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-5UTR	ENST00000484875	ENST00000469379		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-3UTR	ENST00000484875	ENST00000331808		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-5UTR	ENST00000361612	ENST00000469379		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-3UTR	ENST00000361612	ENST00000331808		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-5UTR	ENST00000467815	ENST00000469379		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-3UTR	ENST00000467815	ENST00000331808		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-5UTR	ENST00000478766	ENST00000469379		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
intron-3UTR	ENST00000478766	ENST00000331808		TCGA	RV	STAD	TCGA-RD-A8MW-01A	SULF2	chr20	46414087	-	DEXI	chr16	11023416	-
Frame-shit	ENST00000356327	ENST00000231706		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
5CDS-intron	ENST00000356327	ENST00000466168		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
Frame-shit	ENST00000351298	ENST00000231706		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
5CDS-intron	ENST00000351298	ENST00000466168		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
3UTR-3CDS	ENST00000342215	ENST00000231706		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
3UTR-intron	ENST00000342215	ENST00000466168		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
Frame-shit	ENST00000340989	ENST00000231706		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
5CDS-intron	ENST00000340989	ENST00000466168		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000497307	ENST00000231706		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000497307	ENST00000466168		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	PLD1	chr3	171338176	-	SLC7A14	chr3	170219134	-
In-frame	ENST00000399788	ENST00000305108		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
In-frame	ENST00000399788	ENST00000397265		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000542920		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000433832		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000399788	ENST00000537416		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000305108		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000397265		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000542920		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000433832		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
intron-intron	ENST00000540838	ENST00000537416		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000305108		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000397265		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000542920		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000433832		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000382815	ENST00000537416		TCGA	RV	STAD	TCGA-BR-8295-01A	KDM5A	chr12	404739	-	NINJ2	chr12	675344	-
Frame-shit	ENST00000392876	ENST00000450485		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
Frame-shit	ENST00000392876	ENST00000333479		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
5CDS-intron	ENST00000392876	ENST00000545065		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
5CDS-intron	ENST00000392876	ENST00000537348		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
5CDS-5UTR	ENST00000392876	ENST00000436959		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
5CDS-intron	ENST00000392876	ENST00000534995		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
intron-3CDS	ENST00000465502	ENST00000450485		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
intron-3CDS	ENST00000465502	ENST00000333479		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
intron-intron	ENST00000465502	ENST00000545065		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
intron-intron	ENST00000465502	ENST00000537348		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
intron-5UTR	ENST00000465502	ENST00000436959		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
intron-intron	ENST00000465502	ENST00000534995		TCGA	RV	STAD	TCGA-BR-7959-01A	NT5DC3	chr12	104234727	-	KNTC1	chr12	123095369	+
In-frame	ENST00000375486	ENST00000342129		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
In-frame	ENST00000375486	ENST00000340951		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000375486	ENST00000479452		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000375486	ENST00000475006		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000375486	ENST00000465160		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
In-frame	ENST00000444885	ENST00000342129		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
In-frame	ENST00000444885	ENST00000340951		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000444885	ENST00000479452		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000444885	ENST00000475006		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000444885	ENST00000465160		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
In-frame	ENST00000375481	ENST00000342129		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
In-frame	ENST00000375481	ENST00000340951		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000375481	ENST00000479452		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000375481	ENST00000475006		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000375481	ENST00000465160		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
intron-3CDS	ENST00000466151	ENST00000342129		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
intron-3CDS	ENST00000466151	ENST00000340951		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
intron-intron	ENST00000466151	ENST00000479452		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
intron-intron	ENST00000466151	ENST00000475006		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
intron-intron	ENST00000466151	ENST00000465160		TCGA	RV	STAD	TCGA-HU-A4HD-01A	PADI2	chr1	17422404	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000366607	ENST00000544305		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
Frame-shit	ENST00000366607	ENST00000374630		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
Frame-shit	ENST00000366607	ENST00000400191		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
Frame-shit	ENST00000366607	ENST00000374632		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
Frame-shit	ENST00000366607	ENST00000374627		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
5CDS-3UTR	ENST00000366607	ENST00000465676		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
intron-3CDS	ENST00000467767	ENST00000544305		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
intron-3CDS	ENST00000467767	ENST00000374630		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
intron-3CDS	ENST00000467767	ENST00000400191		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
intron-3CDS	ENST00000467767	ENST00000374632		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
intron-3CDS	ENST00000467767	ENST00000374627		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
intron-3UTR	ENST00000467767	ENST00000465676		TCGA	RV	STAD	TCGA-BR-7716-01A	TOMM20	chr1	235291910	-	EPHB2	chr1	23208852	+
5UTR-5UTR	ENST00000328631	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000328631	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000328631	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000328631	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000340879	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000340879	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000340879	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000340879	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000432678	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000432678	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000432678	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000432678	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000431721	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000431721	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000431721	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000431721	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000449610	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000449610	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000449610	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000449610	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000413298	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000413298	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000413298	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000413298	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000450045	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000450045	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000450045	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-intron	ENST00000450045	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000446860	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000446860	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000446860	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000446860	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000417896	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000417896	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000417896	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000417896	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000443964	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000443964	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000443964	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000443964	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000436134	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000436134	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-5UTR	ENST00000436134	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
5UTR-intron	ENST00000436134	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000453202	ENST00000418115		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000453202	ENST00000454011		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-5UTR	ENST00000453202	ENST00000422781		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
intron-intron	ENST00000453202	ENST00000265538		TCGA	RV	STAD	TCGA-VQ-A925-01A	IP6K2	chr3	48754590	-	RHOA	chr3	49413024	-
In-frame	ENST00000405201	ENST00000339570		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
In-frame	ENST00000405201	ENST00000415380		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
In-frame	ENST00000405201	ENST00000261693		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000405201	ENST00000376788		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000405201	ENST00000546215		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000339570		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000415380		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000404621	ENST00000261693		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404621	ENST00000376788		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000404621	ENST00000546215		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404121	ENST00000376788		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-intron	ENST00000404121	ENST00000546215		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5UTR-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000339570		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000415380		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000356219	ENST00000261693		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000356219	ENST00000376788		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000356219	ENST00000546215		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000339570		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000415380		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000397355	ENST00000261693		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000397355	ENST00000376788		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000397355	ENST00000546215		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000339570		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000415380		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000429285	ENST00000261693		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000429285	ENST00000376788		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-intron	ENST00000429285	ENST00000546215		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
5CDS-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	STAD	TCGA-VQ-A91Y-01A	NCOR2	chr12	124979693	-	SCARB1	chr12	125302253	-
Frame-shit	ENST00000392882	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
5CDS-intron	ENST00000392882	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-3CDS	ENST00000358655	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-intron	ENST00000358655	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
Frame-shit	ENST00000355338	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
5CDS-intron	ENST00000355338	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-3CDS	ENST00000344102	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-intron	ENST00000344102	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
Frame-shit	ENST00000557135	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
5CDS-intron	ENST00000557135	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-3CDS	ENST00000556645	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-intron	ENST00000556645	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-3CDS	ENST00000554084	ENST00000374566		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
intron-intron	ENST00000554084	ENST00000374557		TCGA	RV	STAD	TCGA-IN-AB1X-01A	WARS	chr14	100835424	-	EPB41L4B	chr9	111979425	-
In-frame	ENST00000355472	ENST00000309007		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355472	ENST00000292385		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355472	ENST00000393565		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355472	ENST00000393563		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355472	ENST00000512501		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000507633	ENST00000309007		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000507633	ENST00000292385		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000507633	ENST00000393565		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000507633	ENST00000393563		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000507633	ENST00000512501		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000393576	ENST00000309007		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000393576	ENST00000292385		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000393576	ENST00000393565		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000393576	ENST00000393563		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000393576	ENST00000512501		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355958	ENST00000309007		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355958	ENST00000292385		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355958	ENST00000393565		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355958	ENST00000393563		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000355958	ENST00000512501		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000528793	ENST00000309007		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000528793	ENST00000292385		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000528793	ENST00000393565		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000528793	ENST00000393563		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
In-frame	ENST00000528793	ENST00000512501		TCGA	RV	STAD	TCGA-CD-A4MH-01A	GRK6	chr5	176862122	+	DBN1	chr5	176886269	-
5CDS-3UTR	ENST00000585892	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000585892	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000314646	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000314646	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000359692	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000359692	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000389253	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000389253	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000355667	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000355667	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000408974	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
5CDS-3UTR	ENST00000408974	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000591819	ENST00000585548		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
intron-3UTR	ENST00000591819	ENST00000317060		TCGA	RV	STAD	TCGA-IN-A6RI-01A	DNM2	chr19	10870487	+	DAND5	chr19	13084203	+
3UTR-3CDS	ENST00000522012	ENST00000356206		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
3UTR-intron	ENST00000522012	ENST00000521321		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
3UTR-intron	ENST00000522012	ENST00000358689		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
3UTR-intron	ENST00000522012	ENST00000417069		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-3CDS	ENST00000518454	ENST00000356206		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-intron	ENST00000518454	ENST00000521321		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-intron	ENST00000518454	ENST00000358689		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-intron	ENST00000518454	ENST00000417069		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-3CDS	ENST00000265806	ENST00000356206		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-intron	ENST00000265806	ENST00000521321		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-intron	ENST00000265806	ENST00000358689		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-intron	ENST00000265806	ENST00000417069		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
Frame-shit	ENST00000411463	ENST00000356206		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5CDS-intron	ENST00000411463	ENST00000521321		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5CDS-intron	ENST00000411463	ENST00000358689		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5CDS-intron	ENST00000411463	ENST00000417069		TCGA	RV	STAD	TCGA-BR-A4PE-01A	R3HCC1	chr8	23146666	+	ENTPD4	chr8	23243558	-
5UTR-3CDS	ENST00000375114	ENST00000217402		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RALY	chr20	32619410	+	CHMP4B	chr20	32436273	+
5UTR-3CDS	ENST00000246194	ENST00000217402		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RALY	chr20	32619410	+	CHMP4B	chr20	32436273	+
intron-3CDS	ENST00000493399	ENST00000217402		TCGA	RV	STAD	TCGA-VQ-A8PH-01A	RALY	chr20	32619410	+	CHMP4B	chr20	32436273	+
Frame-shit	ENST00000255194	ENST00000297156		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	AP3B1	chr5	77511879	-	CAMLG	chr5	134086449	+
Frame-shit	ENST00000255194	ENST00000514518		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	AP3B1	chr5	77511879	-	CAMLG	chr5	134086449	+
Frame-shit	ENST00000519295	ENST00000297156		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	AP3B1	chr5	77511879	-	CAMLG	chr5	134086449	+
Frame-shit	ENST00000519295	ENST00000514518		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	AP3B1	chr5	77511879	-	CAMLG	chr5	134086449	+
intron-3CDS	ENST00000523204	ENST00000297156		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	AP3B1	chr5	77511879	-	CAMLG	chr5	134086449	+
intron-3CDS	ENST00000523204	ENST00000514518		TCGA	RV	STAD	TCGA-VQ-AA6J-01A	AP3B1	chr5	77511879	-	CAMLG	chr5	134086449	+
5UTR-3CDS	ENST00000222345	ENST00000360876		TCGA	RV	STAD	TCGA-CD-A4MH-01A	SIPA1L3	chr19	38519796	+	EIF3B	chr7	2411412	+
5UTR-3CDS	ENST00000222345	ENST00000397011		TCGA	RV	STAD	TCGA-CD-A4MH-01A	SIPA1L3	chr19	38519796	+	EIF3B	chr7	2411412	+
3UTR-3CDS	ENST00000476317	ENST00000360876		TCGA	RV	STAD	TCGA-CD-A4MH-01A	SIPA1L3	chr19	38519796	+	EIF3B	chr7	2411412	+
3UTR-3CDS	ENST00000476317	ENST00000397011		TCGA	RV	STAD	TCGA-CD-A4MH-01A	SIPA1L3	chr19	38519796	+	EIF3B	chr7	2411412	+
Frame-shit	ENST00000551964	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000551964	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000339433	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000339433	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000359972	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000359972	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000333991	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000333991	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000357310	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000357310	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000552268	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000552268	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000550527	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000550527	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000547045	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000547045	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000549007	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000549007	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000547743	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
5CDS-3UTR	ENST00000547743	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
intron-3CDS	ENST00000547666	ENST00000303460		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
intron-3UTR	ENST00000547666	ENST00000511575		TCGA	RV	STAD	TCGA-BR-7959-01A	APAF1	chr12	99042275	+	HOXC10	chr12	54382953	+
Frame-shit	ENST00000397752	ENST00000341049		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000393470		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000405348		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000393468		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000393467		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000341049		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000393470		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000405348		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000393468		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000393467		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000341049		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000393470		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000405348		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000393468		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000393467		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000341049		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000393470		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000405348		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000393468		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000495962	ENST00000393467		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000341049		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393470		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000405348		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393468		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393467		TCGA	RV	STAD	TCGA-BR-7716-01A	MET	chr7	116340338	+	CAV1	chr7	116199000	+
5UTR-5UTR	ENST00000543523	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000543523	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000543523	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000543523	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000281172	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000281172	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000281172	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5UTR-5UTR	ENST00000281172	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543612	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543612	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543612	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000543612	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000540613	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000540613	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000540613	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000540613	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542903	ENST00000541632		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542903	ENST00000229002		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542903	ENST00000538724		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
intron-5UTR	ENST00000542903	ENST00000536890		TCGA	RV	STAD	TCGA-BR-A4PF-01A	EPS8	chr12	15942095	-	RERGL	chr12	18241890	-
5CDS-5UTR	ENST00000371348	ENST00000326956		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371348	ENST00000417664		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371348	ENST00000371320		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371348	ENST00000371319		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-intron	ENST00000371348	ENST00000357475		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371344	ENST00000326956		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371344	ENST00000417664		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371344	ENST00000371320		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371344	ENST00000371319		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-intron	ENST00000371344	ENST00000357475		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000234831	ENST00000326956		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000234831	ENST00000417664		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000234831	ENST00000371320		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000234831	ENST00000371319		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-intron	ENST00000234831	ENST00000357475		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371341	ENST00000326956		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371341	ENST00000417664		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371341	ENST00000371320		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-5UTR	ENST00000371341	ENST00000371319		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5CDS-intron	ENST00000371341	ENST00000357475		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5UTR-5UTR	ENST00000470395	ENST00000326956		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5UTR-5UTR	ENST00000470395	ENST00000417664		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5UTR-5UTR	ENST00000470395	ENST00000371320		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5UTR-5UTR	ENST00000470395	ENST00000371319		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
5UTR-intron	ENST00000470395	ENST00000357475		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
intron-5UTR	ENST00000371337	ENST00000326956		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
intron-5UTR	ENST00000371337	ENST00000417664		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
intron-5UTR	ENST00000371337	ENST00000371320		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
intron-5UTR	ENST00000371337	ENST00000371319		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
intron-intron	ENST00000371337	ENST00000357475		TCGA	RV	STAD	TCGA-VQ-A91K-01A	TMEM59	chr1	54502283	-	SSBP3	chr1	54722859	-
In-frame	ENST00000579146	ENST00000423485		TCGA	RV	STAD	TCGA-BR-8483-01A	PGAP3	chr17	37844087	-	TOP2A	chr17	38556915	-
In-frame	ENST00000300658	ENST00000423485		TCGA	RV	STAD	TCGA-BR-8483-01A	PGAP3	chr17	37844087	-	TOP2A	chr17	38556915	-
In-frame	ENST00000378011	ENST00000423485		TCGA	RV	STAD	TCGA-BR-8483-01A	PGAP3	chr17	37844087	-	TOP2A	chr17	38556915	-
In-frame	ENST00000429199	ENST00000423485		TCGA	RV	STAD	TCGA-BR-8483-01A	PGAP3	chr17	37844087	-	TOP2A	chr17	38556915	-
In-frame	ENST00000259119	ENST00000436636		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000538048		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000369326		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000341852		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000284483		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000470834		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000460047		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000475336		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000488470		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000259119	ENST00000357327		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000259119	ENST00000464785		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000259119	ENST00000465393		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000436636		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000538048		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000369326		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000341852		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000284483		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000470834		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000460047		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000475336		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000488470		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000426052	ENST00000357327		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000426052	ENST00000464785		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000426052	ENST00000465393		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000436636		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000538048		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000369326		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000341852		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000284483		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000470834		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000460047		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000475336		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000488470		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-3CDS	ENST00000490989	ENST00000357327		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-intron	ENST00000490989	ENST00000464785		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
intron-intron	ENST00000490989	ENST00000465393		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000436636		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000538048		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000369326		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000341852		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000284483		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000470834		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000460047		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000475336		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000488470		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000413427	ENST00000357327		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000413427	ENST00000464785		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000413427	ENST00000465393		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000436636		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000538048		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000369326		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000341852		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000284483		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000470834		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000460047		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000475336		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000488470		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000458537	ENST00000357327		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000458537	ENST00000464785		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
5CDS-intron	ENST00000458537	ENST00000465393		TCGA	RV	STAD	TCGA-VQ-AA6B-01A	SKIL	chr3	170079217	+	TNIK	chr3	171087474	-
In-frame	ENST00000389032	ENST00000539107		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000389032	ENST00000545336		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000389032	ENST00000381256		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000389032	ENST00000381259		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000389032	ENST00000540401		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000389032	ENST00000306172		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000539577	ENST00000539107		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000539577	ENST00000545336		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000539577	ENST00000381256		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000539577	ENST00000381259		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000539577	ENST00000540401		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
5CDS-3UTR	ENST00000539577	ENST00000306172		TCGA	RV	STAD	TCGA-IP-7968-01A	STK38L	chr12	27462130	+	CCDC91	chr12	28603094	+
In-frame	ENST00000230323	ENST00000371460		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000230323	ENST00000371459		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000230323	ENST00000371461		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000230323	ENST00000306867		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000230323	ENST00000371458		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000230323	ENST00000459689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000358871	ENST00000371460		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000358871	ENST00000371459		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000358871	ENST00000371461		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000358871	ENST00000306867		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000358871	ENST00000371458		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000358871	ENST00000459689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000420312	ENST00000371460		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000420312	ENST00000371459		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000420312	ENST00000371461		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000420312	ENST00000306867		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000420312	ENST00000371458		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000420312	ENST00000459689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000403298	ENST00000371460		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000403298	ENST00000371459		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000403298	ENST00000371461		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000403298	ENST00000306867		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000403298	ENST00000371458		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000403298	ENST00000459689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000373033	ENST00000371460		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000373033	ENST00000371459		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000373033	ENST00000371461		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000373033	ENST00000306867		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000373033	ENST00000371458		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000373033	ENST00000459689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000394283	ENST00000371460		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000394283	ENST00000371459		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000394283	ENST00000371461		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000394283	ENST00000306867		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
Frame-shit	ENST00000394283	ENST00000371458		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
5CDS-intron	ENST00000394283	ENST00000459689		TCGA	RV	STAD	TCGA-VQ-A92D-01A	TFEB	chr6	41657469	-	SUPT3H	chr6	44797594	-
In-frame	ENST00000372733	ENST00000372726		TCGA	RV	STAD	TCGA-HU-A4HD-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
In-frame	ENST00000372733	ENST00000537995		TCGA	RV	STAD	TCGA-HU-A4HD-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5CDS-5UTR	ENST00000372733	ENST00000494455		TCGA	RV	STAD	TCGA-HU-A4HD-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5UTR-3CDS	ENST00000537976	ENST00000372726		TCGA	RV	STAD	TCGA-HU-A4HD-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5UTR-3CDS	ENST00000537976	ENST00000537995		TCGA	RV	STAD	TCGA-HU-A4HD-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
5UTR-5UTR	ENST00000537976	ENST00000494455		TCGA	RV	STAD	TCGA-HU-A4HD-01A	SDC4	chr20	43976965	-	TP53TG5	chr20	44006253	-
3UTR-3CDS	ENST00000494757	ENST00000264639		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
3UTR-3CDS	ENST00000494757	ENST00000541736		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000323571	ENST00000264639		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000323571	ENST00000541736		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000585043	ENST00000264639		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000585043	ENST00000541736		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000394103	ENST00000264639		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000394103	ENST00000541736		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000536600	ENST00000264639		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
5UTR-3CDS	ENST00000536600	ENST00000541736		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
intron-3CDS	ENST00000583130	ENST00000264639		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
intron-3CDS	ENST00000583130	ENST00000541736		TCGA	RV	STAD	TCGA-BR-8289-01A	WIPF2	chr17	38375744	+	PSMD3	chr17	38144936	+
In-frame	ENST00000253925	ENST00000355303		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000253925	ENST00000398543		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000253925	ENST00000538023		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000253925	ENST00000316296		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000253925	ENST00000530676		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000253925	ENST00000531349		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
5CDS-intron	ENST00000253925	ENST00000525494		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000389547	ENST00000355303		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000389547	ENST00000398543		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000389547	ENST00000538023		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000389547	ENST00000316296		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000389547	ENST00000530676		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
In-frame	ENST00000389547	ENST00000531349		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
5CDS-intron	ENST00000389547	ENST00000525494		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-3CDS	ENST00000530548	ENST00000355303		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-3CDS	ENST00000530548	ENST00000398543		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-3CDS	ENST00000530548	ENST00000538023		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-3CDS	ENST00000530548	ENST00000316296		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-3CDS	ENST00000530548	ENST00000530676		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-3CDS	ENST00000530548	ENST00000531349		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
intron-intron	ENST00000530548	ENST00000525494		TCGA	RV	STAD	TCGA-VQ-AA6G-01A	PPFIA1	chr11	70118542	+	ANO1	chr11	70007267	+
5CDS-5UTR	ENST00000261798	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000261798	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000261798	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-5UTR	ENST00000377843	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000377843	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000377843	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5UTR-5UTR	ENST00000515435	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5UTR-3UTR	ENST00000515435	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5UTR-3UTR	ENST00000515435	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5UTR-5UTR	ENST00000504676	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5UTR-3UTR	ENST00000504676	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5UTR-3UTR	ENST00000504676	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-5UTR	ENST00000515768	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000515768	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000515768	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
intron-5UTR	ENST00000606719	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
intron-3UTR	ENST00000606719	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
intron-3UTR	ENST00000606719	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
intron-5UTR	ENST00000606299	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
intron-3UTR	ENST00000606299	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
intron-3UTR	ENST00000606299	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-5UTR	ENST00000515748	ENST00000504320		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000515748	ENST00000514688		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
5CDS-3UTR	ENST00000515748	ENST00000296694		TCGA	RV	STAD	TCGA-HU-A4GP-01A	CSNK1A1	chr5	148929638	-	SCGB3A2	chr5	147261009	+
In-frame	ENST00000409785	ENST00000389394		TCGA	RV	STAD	TCGA-BR-8361-01A	KCMF1	chr2	85198590	+	DNAH6	chr2	85023430	+
In-frame	ENST00000409785	ENST00000237449		TCGA	RV	STAD	TCGA-BR-8361-01A	KCMF1	chr2	85198590	+	DNAH6	chr2	85023430	+
5CDS-intron	ENST00000409785	ENST00000398278		TCGA	RV	STAD	TCGA-BR-8361-01A	KCMF1	chr2	85198590	+	DNAH6	chr2	85023430	+
5CDS-intron	ENST00000409785	ENST00000468661		TCGA	RV	STAD	TCGA-BR-8361-01A	KCMF1	chr2	85198590	+	DNAH6	chr2	85023430	+
5CDS-intron	ENST00000409785	ENST00000602588		TCGA	RV	STAD	TCGA-BR-8361-01A	KCMF1	chr2	85198590	+	DNAH6	chr2	85023430	+
In-frame	ENST00000247843	ENST00000261267		TCGA	RV	STAD	TCGA-BR-8289-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000247843	ENST00000549690		TCGA	RV	STAD	TCGA-BR-8289-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000247843	ENST00000548839		TCGA	RV	STAD	TCGA-BR-8289-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000548020	ENST00000261267		TCGA	RV	STAD	TCGA-BR-8289-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000548020	ENST00000549690		TCGA	RV	STAD	TCGA-BR-8289-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
Frame-shit	ENST00000548020	ENST00000548839		TCGA	RV	STAD	TCGA-BR-8289-01A	YEATS4	chr12	69764755	+	LYZ	chr12	69743888	+
In-frame	ENST00000358026	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000358026	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000344626	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000344626	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000429416	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000429416	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000541122	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000541122	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000589677	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000589677	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000444061	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000444061	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000590574	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000590574	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000413806	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000413806	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000450717	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
In-frame	ENST00000450717	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000538456	ENST00000327064		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
intron-3CDS	ENST00000538456	ENST00000344150		TCGA	RV	STAD	TCGA-VQ-A91K-01A	SMARCA4	chr19	11100119	+	CARM1	chr19	11022860	+
Frame-shit	ENST00000368226	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368226	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368226	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368227	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368227	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000532331	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000532331	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368213	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368213	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368210	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368210	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368215	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368215	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000368207	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000368207	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3CDS	ENST00000524481	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5UTR-3UTR	ENST00000524481	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000356698		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
Frame-shit	ENST00000525459	ENST00000368317		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
5CDS-3UTR	ENST00000525459	ENST00000485757		TCGA	RV	STAD	TCGA-VQ-AA68-01A	PTPRK	chr6	128841404	-	RSPO3	chr6	127469793	+
In-frame	ENST00000264930	ENST00000310581		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC12A7	chr5	1074682	-	TERT	chr5	1266650	-
In-frame	ENST00000264930	ENST00000296820		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC12A7	chr5	1074682	-	TERT	chr5	1266650	-
In-frame	ENST00000264930	ENST00000334602		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC12A7	chr5	1074682	-	TERT	chr5	1266650	-
Frame-shit	ENST00000264930	ENST00000508104		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC12A7	chr5	1074682	-	TERT	chr5	1266650	-
5CDS-intron	ENST00000264930	ENST00000522877		TCGA	RV	STAD	TCGA-BR-4357-01A	SLC12A7	chr5	1074682	-	TERT	chr5	1266650	-
intron-5UTR	ENST00000511642	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000511642	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000511642	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000511642	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000511642	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000511642	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000415497	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000415497	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000415497	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000415497	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000415497	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000415497	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000372988	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000372988	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000372988	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000372988	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000372988	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000372988	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000510503	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000510503	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000510503	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000510503	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000510503	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000510503	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000511686	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000511686	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000511686	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000511686	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-5UTR	ENST00000511686	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5UTR-intron	ENST00000511686	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372991	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372991	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372991	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372991	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372991	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372991	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372987	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372987	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372987	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372987	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000372987	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000372987	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000414200	ENST00000480912		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000414200	ENST00000395728		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000414200	ENST00000375528		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000414200	ENST00000375530		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-5UTR	ENST00000414200	ENST00000375537		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000498185		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000415323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000450323		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000440987		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000421926		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000551865		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000497104		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000436403		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000443951		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000420874		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000450075		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000552339		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000497361		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000420930		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000428442		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000450229		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000429506		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000547244		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000467139		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000446303		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000427405		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000454705		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000420336		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000546877		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000400006		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000469681		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000400008		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000383372		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000383373		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000550866		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000425250		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
intron-intron	ENST00000414200	ENST00000487513		TCGA	RV	STAD	TCGA-BR-A4QI-01A	CCND3	chr6	42016239	-	EHMT2	chr6	31848625	-
5CDS-5UTR	ENST00000309156	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000309156	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000309185	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000309185	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000394211	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000394211	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
intron-5UTR	ENST00000578702	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
intron-5UTR	ENST00000578702	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000445327	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000445327	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000394209	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000394209	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000394204	ENST00000540723		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-5UTR	ENST00000394204	ENST00000301656		TCGA	RV	STAD	TCGA-D7-8573-01A	GRB7	chr17	37900916	+	KRT27	chr17	38933984	-
5CDS-intron	ENST00000344749	ENST00000465508		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000344749	ENST00000349363		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000344749	ENST00000377577		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000344749	ENST00000294401		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000344749	ENST00000542246		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000344749	ENST00000377573		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000262965	ENST00000465508		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000262965	ENST00000349363		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000262965	ENST00000377577		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000262965	ENST00000294401		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000262965	ENST00000542246		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000262965	ENST00000377573		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000453954	ENST00000465508		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000453954	ENST00000349363		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000453954	ENST00000377577		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000453954	ENST00000294401		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000453954	ENST00000542246		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000453954	ENST00000377573		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000395423	ENST00000465508		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000395423	ENST00000349363		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000395423	ENST00000377577		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000395423	ENST00000294401		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000395423	ENST00000542246		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000395423	ENST00000377573		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000588136	ENST00000465508		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000588136	ENST00000349363		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000588136	ENST00000377577		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000588136	ENST00000294401		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000588136	ENST00000542246		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
5CDS-intron	ENST00000588136	ENST00000377573		TCGA	RV	STAD	TCGA-BR-7197-01A	TCF3	chr19	1619779	-	DNAJC11	chr1	6714099	-
Frame-shit	ENST00000277165	ENST00000375464		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
5CDS-3UTR	ENST00000277165	ENST00000488630		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
Frame-shit	ENST00000375389	ENST00000375464		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
5CDS-3UTR	ENST00000375389	ENST00000488630		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
Frame-shit	ENST00000340893	ENST00000375464		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
5CDS-3UTR	ENST00000340893	ENST00000488630		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
Frame-shit	ENST00000333936	ENST00000375464		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
5CDS-3UTR	ENST00000333936	ENST00000488630		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
intron-3CDS	ENST00000475933	ENST00000375464		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
intron-3UTR	ENST00000475933	ENST00000488630		TCGA	RV	STAD	TCGA-BR-8289-01A	FAM120A	chr9	96214671	+	C9orf89	chr9	95875274	+
5CDS-5UTR	ENST00000294168	ENST00000534397		TCGA	RV	STAD	TCGA-VQ-A8DV-01A	TAF6L	chr11	62543942	+	SCGB1A1	chr11	62189693	+
5CDS-5UTR	ENST00000294168	ENST00000278282		TCGA	RV	STAD	TCGA-VQ-A8DV-01A	TAF6L	chr11	62543942	+	SCGB1A1	chr11	62189693	+
5UTR-5UTR	ENST00000335793	ENST00000359904		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000335793	ENST00000580753		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000335793	ENST00000392720		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000335793	ENST00000359783		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000335793	ENST00000577866		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-3UTR	ENST00000335793	ENST00000585050		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-intron	ENST00000335793	ENST00000577985		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-intron	ENST00000335793	ENST00000577273		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000439510	ENST00000359904		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000439510	ENST00000580753		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000439510	ENST00000392720		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000439510	ENST00000359783		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000439510	ENST00000577866		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-3UTR	ENST00000439510	ENST00000585050		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-intron	ENST00000439510	ENST00000577985		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-intron	ENST00000439510	ENST00000577273		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000581014	ENST00000359904		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000581014	ENST00000580753		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000581014	ENST00000392720		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000581014	ENST00000359783		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-5UTR	ENST00000581014	ENST00000577866		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-3UTR	ENST00000581014	ENST00000585050		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-intron	ENST00000581014	ENST00000577985		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
5UTR-intron	ENST00000581014	ENST00000577273		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000582303	ENST00000359904		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000582303	ENST00000580753		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000582303	ENST00000392720		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000582303	ENST00000359783		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000582303	ENST00000577866		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-3UTR	ENST00000582303	ENST00000585050		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-intron	ENST00000582303	ENST00000577985		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
intron-intron	ENST00000582303	ENST00000577273		TCGA	RV	STAD	TCGA-D7-6820-01A	CDC42EP4	chr17	71308032	-	AMZ2	chr17	66244781	+
Frame-shit	ENST00000361368	ENST00000380050		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361368	ENST00000265741		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361368	ENST00000406263		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361368	ENST00000436577		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5CDS-intron	ENST00000361368	ENST00000496279		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361125	ENST00000380050		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361125	ENST00000265741		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361125	ENST00000406263		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
Frame-shit	ENST00000361125	ENST00000436577		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5CDS-intron	ENST00000361125	ENST00000496279		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5UTR-3CDS	ENST00000480055	ENST00000380050		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5UTR-3CDS	ENST00000480055	ENST00000265741		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5UTR-3CDS	ENST00000480055	ENST00000406263		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5UTR-3CDS	ENST00000480055	ENST00000436577		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
5UTR-intron	ENST00000480055	ENST00000496279		TCGA	RV	STAD	TCGA-BR-8484-01A	SMURF1	chr7	98658222	-	CDK14	chr7	90675212	+
intron-3CDS	ENST00000379882	ENST00000361005		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379882	ENST00000342836		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379882	ENST00000429677		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
intron-3CDS	ENST00000379882	ENST00000379405		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
intron-intron	ENST00000379882	ENST00000495682		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000379868	ENST00000361005		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000379868	ENST00000342836		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000379868	ENST00000429677		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000379868	ENST00000379405		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-intron	ENST00000379868	ENST00000495682		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
In-frame	ENST00000379883	ENST00000361005		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
In-frame	ENST00000379883	ENST00000342836		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
In-frame	ENST00000379883	ENST00000429677		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
In-frame	ENST00000379883	ENST00000379405		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5CDS-intron	ENST00000379883	ENST00000495682		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000545044	ENST00000361005		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000545044	ENST00000342836		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000545044	ENST00000429677		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000545044	ENST00000379405		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-intron	ENST00000545044	ENST00000495682		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000542096	ENST00000361005		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000542096	ENST00000342836		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000542096	ENST00000429677		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000542096	ENST00000379405		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-intron	ENST00000542096	ENST00000495682		TCGA	RV	STAD	TCGA-CG-4444-01A	DDX58	chr9	32500803	-	PRSS3	chr9	33796641	+
5UTR-3CDS	ENST00000379122	ENST00000258930		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-5UTR	ENST00000379122	ENST00000539011		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-intron	ENST00000379122	ENST00000557846		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-5UTR	ENST00000379122	ENST00000560618		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-3CDS	ENST00000332496	ENST00000258930		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-5UTR	ENST00000332496	ENST00000539011		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-intron	ENST00000332496	ENST00000557846		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
5UTR-5UTR	ENST00000332496	ENST00000560618		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-3CDS	ENST00000560263	ENST00000258930		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-5UTR	ENST00000560263	ENST00000539011		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-intron	ENST00000560263	ENST00000557846		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-5UTR	ENST00000560263	ENST00000560618		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-3CDS	ENST00000411539	ENST00000258930		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-5UTR	ENST00000411539	ENST00000539011		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-intron	ENST00000411539	ENST00000557846		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
intron-5UTR	ENST00000411539	ENST00000560618		TCGA	RV	STAD	TCGA-VQ-AA6D-01A	SEMA4B	chr15	90728313	+	CIB2	chr15	78403618	-
In-frame	ENST00000373548	ENST00000373586		TCGA	RV	STAD	TCGA-BR-A4J1-01A	HDAC1	chr1	32768334	+	EIF3I	chr1	32694100	+
5CDS-3UTR	ENST00000373548	ENST00000471486		TCGA	RV	STAD	TCGA-BR-A4J1-01A	HDAC1	chr1	32768334	+	EIF3I	chr1	32694100	+
5UTR-3CDS	ENST00000373541	ENST00000373586		TCGA	RV	STAD	TCGA-BR-A4J1-01A	HDAC1	chr1	32768334	+	EIF3I	chr1	32694100	+
5UTR-3UTR	ENST00000373541	ENST00000471486		TCGA	RV	STAD	TCGA-BR-A4J1-01A	HDAC1	chr1	32768334	+	EIF3I	chr1	32694100	+
intron-3CDS	ENST00000490081	ENST00000373586		TCGA	RV	STAD	TCGA-BR-A4J1-01A	HDAC1	chr1	32768334	+	EIF3I	chr1	32694100	+
intron-3UTR	ENST00000490081	ENST00000471486		TCGA	RV	STAD	TCGA-BR-A4J1-01A	HDAC1	chr1	32768334	+	EIF3I	chr1	32694100	+
Frame-shit	ENST00000225430	ENST00000394303		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000225430	ENST00000394310		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000225430	ENST00000344140		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
5CDS-5UTR	ENST00000225430	ENST00000582877		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000579374	ENST00000394303		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000579374	ENST00000394310		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000579374	ENST00000344140		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
5CDS-5UTR	ENST00000579374	ENST00000582877		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000579260	ENST00000394303		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000579260	ENST00000394310		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000579260	ENST00000344140		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
5CDS-5UTR	ENST00000579260	ENST00000582877		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000582193	ENST00000394303		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000582193	ENST00000394310		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
Frame-shit	ENST00000582193	ENST00000344140		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
5CDS-5UTR	ENST00000582193	ENST00000582877		TCGA	RV	STAD	TCGA-IP-7968-01A	RPL19	chr17	37357572	+	CACNB1	chr17	37351223	-
intron-3CDS	ENST00000361236	ENST00000260228		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
intron-intron	ENST00000361236	ENST00000544938		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
Frame-shit	ENST00000398136	ENST00000260228		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
5CDS-intron	ENST00000398136	ENST00000544938		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
5UTR-3CDS	ENST00000532161	ENST00000260228		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
5UTR-intron	ENST00000532161	ENST00000544938		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
5UTR-3CDS	ENST00000525577	ENST00000260228		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
5UTR-intron	ENST00000525577	ENST00000544938		TCGA	RV	STAD	TCGA-CD-8527-01A	TMEM123	chr11	102319543	-	MMP20	chr11	102449873	-
Frame-shit	ENST00000554684	ENST00000267620		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554684	ENST00000342058		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554684	ENST00000556154		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000554684	ENST00000556961		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000428424	ENST00000267620		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000428424	ENST00000342058		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000428424	ENST00000556154		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000428424	ENST00000556961		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000337238	ENST00000267620		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000337238	ENST00000342058		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000337238	ENST00000556154		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000337238	ENST00000556961		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554943	ENST00000267620		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554943	ENST00000342058		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554943	ENST00000556154		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000554943	ENST00000556961		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000555462	ENST00000267620		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000555462	ENST00000342058		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000555462	ENST00000556154		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000555462	ENST00000556961		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555718	ENST00000267620		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555718	ENST00000342058		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555718	ENST00000556154		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-intron	ENST00000555718	ENST00000556961		TCGA	RV	STAD	TCGA-BR-A4QI-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000425759	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000425759	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000292733	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000292733	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
5UTR-3CDS	ENST00000542773	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
5UTR-3CDS	ENST00000542773	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000263205	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000263205	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000406969	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000406969	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000382974	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000382974	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000541476	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
Frame-shit	ENST00000541476	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
intron-3CDS	ENST00000478831	ENST00000321562		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
intron-3CDS	ENST00000478831	ENST00000544340		TCGA	RV	STAD	TCGA-VQ-A91S-01A	MED15	chr22	20891491	+	FKBP10	chr17	39977906	+
5CDS-intron	ENST00000209728	ENST00000540235		TCGA	RV	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38457860	+	JUP	chr17	39914036	-
5CDS-intron	ENST00000209728	ENST00000393930		TCGA	RV	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38457860	+	JUP	chr17	39914036	-
5CDS-intron	ENST00000209728	ENST00000393931		TCGA	RV	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38457860	+	JUP	chr17	39914036	-
5CDS-intron	ENST00000209728	ENST00000310706		TCGA	RV	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38457860	+	JUP	chr17	39914036	-
Frame-shit	ENST00000484532	ENST00000608083		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000484532	ENST00000377855		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
In-frame	ENST00000484532	ENST00000545482		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000484532	ENST00000361521		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000484532	ENST00000377842		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000484532	ENST00000377845		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
5CDS-intron	ENST00000484532	ENST00000541130		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000234875	ENST00000608083		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000234875	ENST00000377855		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
In-frame	ENST00000234875	ENST00000545482		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000234875	ENST00000361521		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000234875	ENST00000377842		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000234875	ENST00000377845		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
5CDS-intron	ENST00000234875	ENST00000541130		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000497965	ENST00000608083		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000497965	ENST00000377855		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000497965	ENST00000545482		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
In-frame	ENST00000497965	ENST00000361521		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000497965	ENST00000377842		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
In-frame	ENST00000497965	ENST00000377845		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
5CDS-intron	ENST00000497965	ENST00000541130		TCGA	RV	STAD	TCGA-BR-A452-01A	RPL22	chr1	6252990	-	ACOT7	chr1	6324755	-
5UTR-intron	ENST00000336308	ENST00000540235		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000336308	ENST00000393930		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000336308	ENST00000393931		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000336308	ENST00000310706		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
3UTR-intron	ENST00000578232	ENST00000540235		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
3UTR-5UTR	ENST00000578232	ENST00000393930		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
3UTR-5UTR	ENST00000578232	ENST00000393931		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
3UTR-5UTR	ENST00000578232	ENST00000310706		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-intron	ENST00000544210	ENST00000540235		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000544210	ENST00000393930		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000544210	ENST00000393931		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000544210	ENST00000310706		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-intron	ENST00000394250	ENST00000540235		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000394250	ENST00000393930		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000394250	ENST00000393931		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000394250	ENST00000310706		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-intron	ENST00000580611	ENST00000540235		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000580611	ENST00000393930		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000580611	ENST00000393931		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5UTR-5UTR	ENST00000580611	ENST00000310706		TCGA	RV	STAD	TCGA-VQ-A91S-01A	STARD3	chr17	37793484	+	JUP	chr17	39928114	-
5CDS-5UTR	ENST00000353139	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000353139	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000353139	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000353139	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000353139	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000353139	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000360679	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000360679	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000360679	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000360679	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000360679	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000360679	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000394406	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000394406	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000394406	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000394406	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000394406	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000394406	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000335166	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000335166	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000335166	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000335166	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000335166	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000335166	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000416895	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000416895	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000416895	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000416895	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000416895	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000416895	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000361253	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000361253	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000361253	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000361253	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000361253	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000361253	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000588142	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000588142	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-5UTR	ENST00000588142	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000588142	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000588142	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
5CDS-intron	ENST00000588142	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000589665	ENST00000254066		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000589665	ENST00000394089		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-5UTR	ENST00000589665	ENST00000425707		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000589665	ENST00000394086		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000589665	ENST00000394081		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
intron-intron	ENST00000589665	ENST00000420042		TCGA	RV	STAD	TCGA-BR-8483-01A	ACACA	chr17	35687113	-	RARA	chr17	38487109	+
Frame-shit	ENST00000598742	ENST00000357396		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-intron	ENST00000598742	ENST00000595255		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-intron	ENST00000598742	ENST00000221999		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-intron	ENST00000598742	ENST00000344550		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5UTR-3CDS	ENST00000221975	ENST00000357396		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5UTR-intron	ENST00000221975	ENST00000595255		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5UTR-intron	ENST00000221975	ENST00000221999		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5UTR-intron	ENST00000221975	ENST00000344550		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
Frame-shit	ENST00000593863	ENST00000357396		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-intron	ENST00000593863	ENST00000595255		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-intron	ENST00000593863	ENST00000221999		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-intron	ENST00000593863	ENST00000344550		TCGA	RV	STAD	TCGA-BR-A4J1-01A	RPS19	chr19	42365281	+	CEACAM3	chr19	42314003	+
5CDS-3UTR	ENST00000378004	ENST00000343735		TCGA	LD	STAD	TCGA-B7-5816-01A	ARHGAP26	chr5	142292834	+	CLDN18	chr3	137750565	+
5CDS-3UTR	ENST00000378004	ENST00000183605		TCGA	LD	STAD	TCGA-B7-5816-01A	ARHGAP26	chr5	142292834	+	CLDN18	chr3	137750565	+
5CDS-3UTR	ENST00000274498	ENST00000343735		TCGA	LD	STAD	TCGA-B7-5816-01A	ARHGAP26	chr5	142292834	+	CLDN18	chr3	137750565	+
5CDS-3UTR	ENST00000274498	ENST00000183605		TCGA	LD	STAD	TCGA-B7-5816-01A	ARHGAP26	chr5	142292834	+	CLDN18	chr3	137750565	+
intron-3UTR	ENST00000486650	ENST00000343735		TCGA	LD	STAD	TCGA-B7-5816-01A	ARHGAP26	chr5	142292834	+	CLDN18	chr3	137750565	+
intron-3UTR	ENST00000486650	ENST00000183605		TCGA	LD	STAD	TCGA-B7-5816-01A	ARHGAP26	chr5	142292834	+	CLDN18	chr3	137750565	+
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-B7-5816-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142292764	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-B7-5816-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142292764	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-B7-5816-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142292764	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-B7-5816-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142292764	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-B7-5816-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142292764	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-B7-5816-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142292764	+
In-frame	ENST00000263398	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000263398	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000263398	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000263398	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000263398	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000526025	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000526025	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000526025	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000526025	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-intron	ENST00000526025	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000449691	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000449691	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000449691	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000449691	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000449691	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000360158	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000360158	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000360158	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000360158	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000360158	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000415148	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000415148	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000415148	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000415148	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000415148	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000437706	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000437706	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000437706	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000437706	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000437706	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000433354	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000433354	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000433354	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000433354	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000433354	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000428726	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000428726	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000428726	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000428726	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000428726	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000526669	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000526669	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000526669	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000526669	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000526669	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000433892	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000433892	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000433892	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000433892	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000433892	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
Frame-shit	ENST00000278386	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000278386	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000278386	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000278386	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000278386	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000434472	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000434472	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000434472	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000434472	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000434472	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
In-frame	ENST00000352818	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000352818	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000352818	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-5UTR	ENST00000352818	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
5CDS-intron	ENST00000352818	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-3CDS	ENST00000528922	ENST00000278379		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000528922	ENST00000395750		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000528922	ENST00000395753		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-5UTR	ENST00000528922	ENST00000606205		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
intron-intron	ENST00000528922	ENST00000479543		TCGA	LD	STAD	TCGA-B7-5818-01A	CD44	chr11	35243279	+	SLC1A2	chr11	35339063	-
Frame-shit	ENST00000436639	ENST00000521072		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
Frame-shit	ENST00000436639	ENST00000424445		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
Frame-shit	ENST00000436639	ENST00000440797		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
5CDS-intron	ENST00000436639	ENST00000524031		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000302071	ENST00000521072		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000302071	ENST00000424445		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000302071	ENST00000440797		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-intron	ENST00000302071	ENST00000524031		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000356644	ENST00000521072		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000356644	ENST00000424445		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-3CDS	ENST00000356644	ENST00000440797		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
intron-intron	ENST00000356644	ENST00000524031		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000517548	ENST00000521072		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000517548	ENST00000424445		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
5UTR-3CDS	ENST00000517548	ENST00000440797		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
5UTR-intron	ENST00000517548	ENST00000524031		TCGA	LD	STAD	TCGA-B7-A5TN-01A	SESN1	chr6	109414998	-	PPIL6	chr6	109714140	-
5CDS-5UTR	ENST00000262948	ENST00000545797		TCGA	LD	STAD	TCGA-BR-4187-01A	MAP2K2	chr19	4123781	-	DAPK3	chr19	3969827	-
5CDS-5UTR	ENST00000262948	ENST00000301264		TCGA	LD	STAD	TCGA-BR-4187-01A	MAP2K2	chr19	4123781	-	DAPK3	chr19	3969827	-
5UTR-5UTR	ENST00000394867	ENST00000545797		TCGA	LD	STAD	TCGA-BR-4187-01A	MAP2K2	chr19	4123781	-	DAPK3	chr19	3969827	-
5UTR-5UTR	ENST00000394867	ENST00000301264		TCGA	LD	STAD	TCGA-BR-4187-01A	MAP2K2	chr19	4123781	-	DAPK3	chr19	3969827	-
5UTR-5UTR	ENST00000599345	ENST00000545797		TCGA	LD	STAD	TCGA-BR-4187-01A	MAP2K2	chr19	4123781	-	DAPK3	chr19	3969827	-
5UTR-5UTR	ENST00000599345	ENST00000301264		TCGA	LD	STAD	TCGA-BR-4187-01A	MAP2K2	chr19	4123781	-	DAPK3	chr19	3969827	-
Frame-shit	ENST00000320672	ENST00000296674		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
In-frame	ENST00000320672	ENST00000510210		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000320672	ENST00000512493		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000320672	ENST00000510019		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000320672	ENST00000507980		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000320672	ENST00000503605		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000320672	ENST00000511844		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000509053	ENST00000296674		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
In-frame	ENST00000509053	ENST00000510210		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000509053	ENST00000512493		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000509053	ENST00000510019		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000509053	ENST00000507980		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000509053	ENST00000503605		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000509053	ENST00000511844		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000514493	ENST00000296674		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
In-frame	ENST00000514493	ENST00000510210		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000514493	ENST00000512493		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000514493	ENST00000510019		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000514493	ENST00000507980		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000514493	ENST00000503605		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000514493	ENST00000511844		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-3CDS	ENST00000510060	ENST00000296674		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-3CDS	ENST00000510060	ENST00000510210		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-3CDS	ENST00000510060	ENST00000512493		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-3CDS	ENST00000510060	ENST00000510019		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-3CDS	ENST00000510060	ENST00000507980		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-5UTR	ENST00000510060	ENST00000503605		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
intron-5UTR	ENST00000510060	ENST00000511844		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000505980	ENST00000296674		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
In-frame	ENST00000505980	ENST00000510210		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000505980	ENST00000512493		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000505980	ENST00000510019		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000505980	ENST00000507980		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000505980	ENST00000503605		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000505980	ENST00000511844		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000515395	ENST00000296674		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
In-frame	ENST00000515395	ENST00000510210		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000515395	ENST00000512493		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000515395	ENST00000510019		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000515395	ENST00000507980		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000515395	ENST00000503605		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
5CDS-5UTR	ENST00000515395	ENST00000511844		TCGA	LD	STAD	TCGA-BR-4187-01A	SSBP2	chr5	81046800	-	RPS23	chr5	81573671	-
Frame-shit	ENST00000310955	ENST00000563594		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000310955	ENST00000268676		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000310955	ENST00000569453		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
In-frame	ENST00000310955	ENST00000418391		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000310955	ENST00000567874		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000310955	ENST00000570182		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000310955	ENST00000563795		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
5CDS-3UTR	ENST00000310955	ENST00000563848		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000372462	ENST00000563594		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000372462	ENST00000268676		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000372462	ENST00000569453		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
In-frame	ENST00000372462	ENST00000418391		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000372462	ENST00000567874		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000372462	ENST00000570182		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
Frame-shit	ENST00000372462	ENST00000563795		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
5CDS-3UTR	ENST00000372462	ENST00000563848		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000563594		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000268676		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000569453		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000418391		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000567874		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000570182		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3CDS	ENST00000478882	ENST00000563795		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
3UTR-3UTR	ENST00000478882	ENST00000563848		TCGA	LD	STAD	TCGA-BR-4255-01A	CDC20	chr1	43825454	+	DEF8	chr16	90025552	+
intron-3CDS	ENST00000370801	ENST00000261769		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
intron-3CDS	ENST00000370801	ENST00000422392		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
intron-3UTR	ENST00000370801	ENST00000562836		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
5UTR-3CDS	ENST00000370798	ENST00000261769		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
5UTR-3CDS	ENST00000370798	ENST00000422392		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
5UTR-3UTR	ENST00000370798	ENST00000562836		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
intron-3CDS	ENST00000476275	ENST00000261769		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
intron-3CDS	ENST00000476275	ENST00000422392		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
intron-3UTR	ENST00000476275	ENST00000562836		TCGA	LD	STAD	TCGA-BR-4255-01A	ZZZ3	chr1	78148947	-	CDH1	chr16	68835573	+
5CDS-5UTR	ENST00000369983	ENST00000441037		TCGA	LD	STAD	TCGA-BR-4267-01A	GBF1	chr10	104019873	+	AGBL1	chr15	86685235	+
5CDS-intron	ENST00000369983	ENST00000421325		TCGA	LD	STAD	TCGA-BR-4267-01A	GBF1	chr10	104019873	+	AGBL1	chr15	86685235	+
5CDS-intron	ENST00000369983	ENST00000389298		TCGA	LD	STAD	TCGA-BR-4267-01A	GBF1	chr10	104019873	+	AGBL1	chr15	86685235	+
intron-5UTR	ENST00000476019	ENST00000441037		TCGA	LD	STAD	TCGA-BR-4267-01A	GBF1	chr10	104019873	+	AGBL1	chr15	86685235	+
intron-intron	ENST00000476019	ENST00000421325		TCGA	LD	STAD	TCGA-BR-4267-01A	GBF1	chr10	104019873	+	AGBL1	chr15	86685235	+
intron-intron	ENST00000476019	ENST00000389298		TCGA	LD	STAD	TCGA-BR-4267-01A	GBF1	chr10	104019873	+	AGBL1	chr15	86685235	+
3UTR-3UTR	ENST00000261267	ENST00000343735		TCGA	LD	STAD	TCGA-BR-4267-01A	LYZ	chr12	69747259	+	CLDN18	chr3	137751234	+
3UTR-3UTR	ENST00000261267	ENST00000183605		TCGA	LD	STAD	TCGA-BR-4267-01A	LYZ	chr12	69747259	+	CLDN18	chr3	137751234	+
3UTR-3UTR	ENST00000549690	ENST00000343735		TCGA	LD	STAD	TCGA-BR-4267-01A	LYZ	chr12	69747259	+	CLDN18	chr3	137751234	+
3UTR-3UTR	ENST00000549690	ENST00000183605		TCGA	LD	STAD	TCGA-BR-4267-01A	LYZ	chr12	69747259	+	CLDN18	chr3	137751234	+
intron-3UTR	ENST00000548839	ENST00000343735		TCGA	LD	STAD	TCGA-BR-4267-01A	LYZ	chr12	69747259	+	CLDN18	chr3	137751234	+
intron-3UTR	ENST00000548839	ENST00000183605		TCGA	LD	STAD	TCGA-BR-4267-01A	LYZ	chr12	69747259	+	CLDN18	chr3	137751234	+
5CDS-5UTR	ENST00000338564	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000338564	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000338564	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000338564	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000561208	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000561208	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000561208	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000561208	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397624	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397624	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397624	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397624	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000382766	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000382766	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000382766	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000382766	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000444725	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000444725	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000444725	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000444725	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000340545	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000340545	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000340545	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000340545	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559085	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559085	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559085	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559085	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000219869	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000219869	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000219869	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000219869	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000557796	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000557796	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000557796	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000557796	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397620	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397620	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397620	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000397620	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000424352	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000424352	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000424352	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000424352	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559561	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559561	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559561	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
5CDS-5UTR	ENST00000559561	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000559408	ENST00000397795		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000559408	ENST00000256552		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000559408	ENST00000542188		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
intron-5UTR	ENST00000559408	ENST00000559179		TCGA	LD	STAD	TCGA-BR-4280-01A	MEIS2	chr15	37329015	-	TRPM1	chr15	31369187	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-BR-6453-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-BR-6453-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-BR-6453-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-BR-6453-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-BR-6453-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-BR-6453-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000317551	ENST00000552491		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000547825		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000552823		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000394943		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000341247		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000552783		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
In-frame	ENST00000317551	ENST00000552909		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5CDS-intron	ENST00000317551	ENST00000552008		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552491		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000547825		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552823		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000394943		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000341247		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552783		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000422340	ENST00000552909		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-intron	ENST00000422340	ENST00000552008		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552491		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000547825		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552823		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000394943		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000341247		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552783		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-3CDS	ENST00000547852	ENST00000552909		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
5UTR-intron	ENST00000547852	ENST00000552008		TCGA	LD	STAD	TCGA-BR-6454-01A	CERS5	chr12	50560884	-	LIMA1	chr12	50575820	-
intron-intron	ENST00000395282	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395282	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395282	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395282	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000395282	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395282	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395283	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395283	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395283	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395283	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000395283	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000395283	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000340417	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000340417	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000340417	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000340417	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000340417	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000340417	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000442461	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000442461	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000442461	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000442461	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000442461	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000442461	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000446851	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000446851	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000446851	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000446851	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000446851	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000446851	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000510557	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000510557	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000510557	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000510557	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-5UTR	ENST00000510557	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000510557	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000506560	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000506560	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000506560	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000506560	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000506560	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000506560	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000505397	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000505397	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000505397	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000505397	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-5UTR	ENST00000505397	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
5UTR-intron	ENST00000505397	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000505905	ENST00000311507		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000505905	ENST00000411416		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000505905	ENST00000515389		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000505905	ENST00000509973		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-5UTR	ENST00000505905	ENST00000505406		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
intron-intron	ENST00000505905	ENST00000426923		TCGA	LD	STAD	TCGA-BR-6454-01A	LIN54	chr4	83933945	-	PLAC8	chr4	84039124	-
Frame-shit	ENST00000337318	ENST00000367157		TCGA	LD	STAD	TCGA-BR-6456-01A	FAM53B	chr10	126370176	-	NUAK2	chr1	205277860	-
In-frame	ENST00000392754	ENST00000367157		TCGA	LD	STAD	TCGA-BR-6456-01A	FAM53B	chr10	126370176	-	NUAK2	chr1	205277860	-
Frame-shit	ENST00000280780	ENST00000367157		TCGA	LD	STAD	TCGA-BR-6456-01A	FAM53B	chr10	126370176	-	NUAK2	chr1	205277860	-
In-frame	ENST00000398645	ENST00000376862		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
5CDS-intron	ENST00000398645	ENST00000482637		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
In-frame	ENST00000529006	ENST00000376862		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
5CDS-intron	ENST00000529006	ENST00000482637		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
3UTR-3CDS	ENST00000526258	ENST00000376862		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
3UTR-intron	ENST00000526258	ENST00000482637		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
intron-3CDS	ENST00000308783	ENST00000376862		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
intron-intron	ENST00000308783	ENST00000482637		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
intron-3CDS	ENST00000530342	ENST00000376862		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
intron-intron	ENST00000530342	ENST00000482637		TCGA	LD	STAD	TCGA-BR-6456-01A	KDM2A	chr11	66999431	+	SYNDIG1	chr20	24565492	+
5CDS-5UTR	ENST00000311117	ENST00000373510		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000311117	ENST00000316459		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5UTR-5UTR	ENST00000334914	ENST00000373510		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5UTR-5UTR	ENST00000334914	ENST00000316459		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000257745	ENST00000373510		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000257745	ENST00000316459		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000334877	ENST00000373510		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000334877	ENST00000316459		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000476671	ENST00000373510		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5CDS-5UTR	ENST00000476671	ENST00000316459		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
intron-5UTR	ENST00000480368	ENST00000373510		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
intron-5UTR	ENST00000480368	ENST00000316459		TCGA	LD	STAD	TCGA-BR-6456-01A	KMT2E	chr7	104707254	+	ZBTB8A	chr1	33058532	+
5UTR-3CDS	ENST00000393223	ENST00000525428		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000393223	ENST00000263309		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000393223	ENST00000525064		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000393223	ENST00000532069		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000393223	ENST00000528364		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-intron	ENST00000393223	ENST00000533957		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000346299	ENST00000525428		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000346299	ENST00000263309		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000346299	ENST00000525064		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000346299	ENST00000532069		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000346299	ENST00000528364		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-intron	ENST00000346299	ENST00000533957		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000409459	ENST00000525428		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000409459	ENST00000263309		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000409459	ENST00000525064		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000409459	ENST00000532069		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000409459	ENST00000528364		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-intron	ENST00000409459	ENST00000533957		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000352297	ENST00000525428		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000352297	ENST00000263309		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000352297	ENST00000525064		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000352297	ENST00000532069		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-3CDS	ENST00000352297	ENST00000528364		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
5UTR-intron	ENST00000352297	ENST00000533957		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000484818	ENST00000525428		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000484818	ENST00000263309		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000484818	ENST00000525064		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000484818	ENST00000532069		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-3CDS	ENST00000484818	ENST00000528364		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
intron-intron	ENST00000484818	ENST00000533957		TCGA	LD	STAD	TCGA-BR-6456-01A	MTMR2	chr11	95647406	-	CLNS1A	chr11	77340944	-
Frame-shit	ENST00000371627	ENST00000181796		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000378470		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000468747		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000378467		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000378465		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000378458		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000478076		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000378462		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000496330		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000479731		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
5CDS-intron	ENST00000371627	ENST00000471815		TCGA	LD	STAD	TCGA-BR-6456-01A	TNKS2	chr10	93602148	+	FAM107B	chr10	14709690	-
In-frame	ENST00000367470	ENST00000366641		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
5CDS-5UTR	ENST00000367470	ENST00000476717		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
In-frame	ENST00000419367	ENST00000366641		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
5CDS-5UTR	ENST00000419367	ENST00000476717		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
In-frame	ENST00000287859	ENST00000366641		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
5CDS-5UTR	ENST00000287859	ENST00000476717		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
In-frame	ENST00000432021	ENST00000366641		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
5CDS-5UTR	ENST00000432021	ENST00000476717		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
intron-3CDS	ENST00000461662	ENST00000366641		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
intron-5UTR	ENST00000461662	ENST00000476717		TCGA	LD	STAD	TCGA-BR-6458-01A	C1orf27	chr1	186352288	+	EGLN1	chr1	231509845	-
Frame-shit	ENST00000005260	ENST00000336374		TCGA	LD	STAD	TCGA-BR-6564-01A	BAIAP2L1	chr7	98030114	-	CYP3A7	chr7	99328775	-
5UTR-3CDS	ENST00000462558	ENST00000336374		TCGA	LD	STAD	TCGA-BR-6564-01A	BAIAP2L1	chr7	98030114	-	CYP3A7	chr7	99328775	-
intron-3CDS	ENST00000314675	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000374223	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000357089	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000374221	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000374217	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000374222	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000535108	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
intron-3CDS	ENST00000436301	ENST00000390564		TCGA	LD	STAD	TCGA-BR-6566-01A	UBXN11	chr1	26609342	-	IGHJ2	chr14	106331459	-
In-frame	ENST00000455089	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
In-frame	ENST00000342916	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
In-frame	ENST00000344576	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
In-frame	ENST00000420316	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
In-frame	ENST00000275493	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
In-frame	ENST00000442591	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
3UTR-3CDS	ENST00000463948	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
intron-3CDS	ENST00000454757	ENST00000239316		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	INSL4	chr9	5233654	+
Frame-shit	ENST00000455089	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000455089	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000455089	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000455089	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000455089	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000455089	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000342916	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000342916	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000342916	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000342916	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000342916	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000342916	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000344576	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000344576	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000344576	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000344576	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000344576	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000344576	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000420316	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000420316	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000420316	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000420316	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000420316	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000420316	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000275493	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000275493	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000275493	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000275493	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000275493	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000275493	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000442591	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000442591	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000442591	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
Frame-shit	ENST00000442591	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000442591	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
5CDS-intron	ENST00000442591	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
3UTR-3CDS	ENST00000463948	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
3UTR-3CDS	ENST00000463948	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
3UTR-3CDS	ENST00000463948	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
3UTR-3CDS	ENST00000463948	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
3UTR-intron	ENST00000463948	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
3UTR-intron	ENST00000463948	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
intron-3CDS	ENST00000454757	ENST00000381750		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
intron-3CDS	ENST00000454757	ENST00000381730		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
intron-3CDS	ENST00000454757	ENST00000381728		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
intron-3CDS	ENST00000454757	ENST00000448872		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
intron-intron	ENST00000454757	ENST00000381732		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
intron-intron	ENST00000454757	ENST00000445485		TCGA	LD	STAD	TCGA-BR-6706-01A	EGFR	chr7	55087058	+	RCL1	chr9	4849447	+
In-frame	ENST00000333916	ENST00000433700		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
In-frame	ENST00000333916	ENST00000443698		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
In-frame	ENST00000333916	ENST00000380062		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
In-frame	ENST00000333916	ENST00000429045		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
Frame-shit	ENST00000535437	ENST00000433700		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
Frame-shit	ENST00000535437	ENST00000443698		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
Frame-shit	ENST00000535437	ENST00000380062		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
Frame-shit	ENST00000535437	ENST00000429045		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
intron-3CDS	ENST00000520187	ENST00000433700		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
intron-3CDS	ENST00000520187	ENST00000443698		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
intron-3CDS	ENST00000520187	ENST00000380062		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
intron-3CDS	ENST00000520187	ENST00000429045		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
5UTR-3CDS	ENST00000495958	ENST00000433700		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
5UTR-3CDS	ENST00000495958	ENST00000443698		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
5UTR-3CDS	ENST00000495958	ENST00000380062		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
5UTR-3CDS	ENST00000495958	ENST00000429045		TCGA	LD	STAD	TCGA-BR-6709-01A	CAAP1	chr9	26884808	-	IFT74	chr9	27009018	+
intron-5UTR	ENST00000515359	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000515359	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-intron	ENST00000515359	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000515359	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000515359	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000308775	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000308775	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-intron	ENST00000308775	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000308775	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000308775	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000541308	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000541308	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-intron	ENST00000541308	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000541308	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000541308	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000539901	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000539901	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-intron	ENST00000539901	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000539901	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000539901	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000545947	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000545947	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-intron	ENST00000545947	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000545947	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000545947	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000538711	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000538711	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-intron	ENST00000538711	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000538711	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
5UTR-5UTR	ENST00000538711	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000479935	ENST00000393893		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000479935	ENST00000341356		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-intron	ENST00000479935	ENST00000539724		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000479935	ENST00000453768		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
intron-5UTR	ENST00000479935	ENST00000545016		TCGA	LD	STAD	TCGA-BR-6709-01A	DAG1	chr3	49507866	+	CORO1B	chr11	67210101	-
In-frame	ENST00000342628	ENST00000280665		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
In-frame	ENST00000342628	ENST00000397173		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5CDS-5UTR	ENST00000342628	ENST00000541700		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5CDS-5UTR	ENST00000342628	ENST00000540622		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
In-frame	ENST00000361953	ENST00000280665		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
In-frame	ENST00000361953	ENST00000397173		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5CDS-5UTR	ENST00000361953	ENST00000541700		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5CDS-5UTR	ENST00000361953	ENST00000540622		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
In-frame	ENST00000359843	ENST00000280665		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
In-frame	ENST00000359843	ENST00000397173		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5CDS-5UTR	ENST00000359843	ENST00000541700		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5CDS-5UTR	ENST00000359843	ENST00000540622		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5UTR-3CDS	ENST00000537018	ENST00000280665		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5UTR-3CDS	ENST00000537018	ENST00000397173		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5UTR-5UTR	ENST00000537018	ENST00000541700		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
5UTR-5UTR	ENST00000537018	ENST00000540622		TCGA	LD	STAD	TCGA-BR-6709-01A	FOXM1	chr12	2975559	-	DCP1B	chr12	2062454	-
Frame-shit	ENST00000245414	ENST00000255759		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000245414	ENST00000573968		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000245414	ENST00000573396		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000245414	ENST00000575744		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000245414	ENST00000575073		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000245414	ENST00000573429		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
Frame-shit	ENST00000405885	ENST00000255759		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000405885	ENST00000573968		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000405885	ENST00000573396		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000405885	ENST00000575744		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000405885	ENST00000575073		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5CDS-intron	ENST00000405885	ENST00000573429		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
intron-3CDS	ENST00000463784	ENST00000255759		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
intron-intron	ENST00000463784	ENST00000573968		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
intron-intron	ENST00000463784	ENST00000573396		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
intron-intron	ENST00000463784	ENST00000575744		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
intron-intron	ENST00000463784	ENST00000575073		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
intron-intron	ENST00000463784	ENST00000573429		TCGA	LD	STAD	TCGA-BR-6709-01A	IRF1	chr5	131822249	-	FOPNL	chr16	15973745	-
5UTR-3CDS	ENST00000358409	ENST00000377724		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-3CDS	ENST00000358409	ENST00000242323		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-intron	ENST00000358409	ENST00000483167		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-3CDS	ENST00000359864	ENST00000377724		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-3CDS	ENST00000359864	ENST00000242323		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-intron	ENST00000359864	ENST00000483167		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-3CDS	ENST00000397122	ENST00000377724		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-3CDS	ENST00000397122	ENST00000242323		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
5UTR-intron	ENST00000397122	ENST00000483167		TCGA	LD	STAD	TCGA-BR-6709-01A	TEAD4	chr12	3069206	+	DCAF10	chr9	37854777	+
In-frame	ENST00000336755	ENST00000380338		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000336755	ENST00000355930		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000336755	ENST00000429426		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000336755	ENST00000475957		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000336755	ENST00000380321		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
intron-3CDS	ENST00000534928	ENST00000380338		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
intron-5UTR	ENST00000534928	ENST00000355930		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
intron-5UTR	ENST00000534928	ENST00000429426		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
intron-intron	ENST00000534928	ENST00000475957		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
intron-intron	ENST00000534928	ENST00000380321		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
3UTR-3CDS	ENST00000461038	ENST00000380338		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
3UTR-5UTR	ENST00000461038	ENST00000355930		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
3UTR-5UTR	ENST00000461038	ENST00000429426		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
3UTR-intron	ENST00000461038	ENST00000475957		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
3UTR-intron	ENST00000461038	ENST00000380321		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
In-frame	ENST00000322831	ENST00000380338		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000322831	ENST00000355930		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-5UTR	ENST00000322831	ENST00000429426		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000322831	ENST00000475957		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
5CDS-intron	ENST00000322831	ENST00000380321		TCGA	LD	STAD	TCGA-BR-6709-01A	ZCCHC7	chr9	37126939	+	MLLT3	chr9	20456784	-
In-frame	ENST00000393799	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393799	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393799	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393799	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000393799	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000393799	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-3CDS	ENST00000530427	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-3CDS	ENST00000530427	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-3CDS	ENST00000530427	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-5UTR	ENST00000530427	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-intron	ENST00000530427	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
intron-intron	ENST00000530427	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393800	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393800	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393800	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393800	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000393800	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000393800	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000534534	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000534534	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000534534	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000534534	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000534534	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000534534	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000524845	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000524845	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000524845	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524845	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000524845	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000524845	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000265637	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000265637	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000265637	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265637	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000265637	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000265637	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000524904	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000524904	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000524904	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000524904	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000524904	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000524904	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393801	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393801	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000393801	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000393801	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000393801	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000393801	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000265636	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000265636	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000265636	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000265636	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000265636	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000265636	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000529710	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000529710	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000529710	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000529710	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000529710	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000529710	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000527403	ENST00000377809		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000527403	ENST00000402010		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
In-frame	ENST00000527403	ENST00000413835		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000377810		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000315032		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000508192		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000361128		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000350490		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000502399		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000509502		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-5UTR	ENST00000527403	ENST00000513765		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000527403	ENST00000408948		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
5CDS-intron	ENST00000527403	ENST00000425897		TCGA	LD	STAD	TCGA-BR-6802-01A	PPP6R3	chr11	68343511	+	MARK2	chr11	63662631	+
3UTR-5UTR	ENST00000462274	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
3UTR-5UTR	ENST00000462274	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
3UTR-intron	ENST00000462274	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
5UTR-5UTR	ENST00000338785	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
5UTR-5UTR	ENST00000338785	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
5UTR-intron	ENST00000338785	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000451934	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000451934	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000451934	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000321219	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000321219	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000321219	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000339659	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000339659	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000339659	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000398960	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000398960	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000398960	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000398956	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000398956	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000398956	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000455387	ENST00000291547		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-5UTR	ENST00000455387	ENST00000432907		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
intron-intron	ENST00000455387	ENST00000607150		TCGA	LD	STAD	TCGA-BR-6803-01A	DYRK1A	chr21	38739930	+	PKNOX1	chr21	44424436	+
In-frame	ENST00000353487	ENST00000450485		TCGA	LD	STAD	TCGA-BR-6852-01A	SPPL3	chr12	121341648	-	KNTC1	chr12	123102890	+
In-frame	ENST00000353487	ENST00000333479		TCGA	LD	STAD	TCGA-BR-6852-01A	SPPL3	chr12	121341648	-	KNTC1	chr12	123102890	+
5CDS-intron	ENST00000353487	ENST00000545065		TCGA	LD	STAD	TCGA-BR-6852-01A	SPPL3	chr12	121341648	-	KNTC1	chr12	123102890	+
5CDS-3UTR	ENST00000353487	ENST00000537348		TCGA	LD	STAD	TCGA-BR-6852-01A	SPPL3	chr12	121341648	-	KNTC1	chr12	123102890	+
5CDS-5UTR	ENST00000353487	ENST00000436959		TCGA	LD	STAD	TCGA-BR-6852-01A	SPPL3	chr12	121341648	-	KNTC1	chr12	123102890	+
5CDS-intron	ENST00000353487	ENST00000534995		TCGA	LD	STAD	TCGA-BR-6852-01A	SPPL3	chr12	121341648	-	KNTC1	chr12	123102890	+
In-frame	ENST00000296468	ENST00000406875		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
In-frame	ENST00000296468	ENST00000428878		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
In-frame	ENST00000296468	ENST00000342645		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
5UTR-3CDS	ENST00000515130	ENST00000406875		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
5UTR-3CDS	ENST00000515130	ENST00000428878		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
5UTR-3CDS	ENST00000515130	ENST00000342645		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000513559	ENST00000406875		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000513559	ENST00000428878		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000513559	ENST00000342645		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000541133	ENST00000406875		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000541133	ENST00000428878		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000541133	ENST00000342645		TCGA	LD	STAD	TCGA-BR-7704-01A	MFSD8	chr4	128870959	-	HIPK2	chr7	139305309	-
Frame-shit	ENST00000321867	ENST00000261674		TCGA	LD	STAD	TCGA-BR-7704-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132281723	+
Frame-shit	ENST00000321867	ENST00000541286		TCGA	LD	STAD	TCGA-BR-7704-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132281723	+
5CDS-3UTR	ENST00000321867	ENST00000539506		TCGA	LD	STAD	TCGA-BR-7704-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132281723	+
intron-3CDS	ENST00000540647	ENST00000261674		TCGA	LD	STAD	TCGA-BR-7704-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132281723	+
intron-3CDS	ENST00000540647	ENST00000541286		TCGA	LD	STAD	TCGA-BR-7704-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132281723	+
intron-3UTR	ENST00000540647	ENST00000539506		TCGA	LD	STAD	TCGA-BR-7704-01A	ULK1	chr12	132380369	+	SFSWAP	chr12	132281723	+
In-frame	ENST00000507166	ENST00000401642		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000507166	ENST00000388940		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000358575	ENST00000401642		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000358575	ENST00000388940		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000337488	ENST00000401642		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000337488	ENST00000388940		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000507922	ENST00000401642		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000507922	ENST00000388940		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000306932	ENST00000401642		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
In-frame	ENST00000306932	ENST00000388940		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
intron-3CDS	ENST00000510668	ENST00000401642		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
intron-3CDS	ENST00000510668	ENST00000388940		TCGA	LD	STAD	TCGA-BR-7707-01A	FIP1L1	chr4	54266006	+	SCFD2	chr4	54179930	-
5CDS-3UTR	ENST00000296543	ENST00000515137		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
5CDS-intron	ENST00000296543	ENST00000265498		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
5CDS-intron	ENST00000296543	ENST00000506797		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
5CDS-3UTR	ENST00000398947	ENST00000515137		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
5CDS-intron	ENST00000398947	ENST00000265498		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
5CDS-intron	ENST00000398947	ENST00000506797		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
intron-3UTR	ENST00000480277	ENST00000515137		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
intron-intron	ENST00000480277	ENST00000265498		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
intron-intron	ENST00000480277	ENST00000506797		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
intron-3UTR	ENST00000515576	ENST00000515137		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
intron-intron	ENST00000515576	ENST00000265498		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
intron-intron	ENST00000515576	ENST00000506797		TCGA	LD	STAD	TCGA-BR-7715-01A	NAA15	chr4	140222985	+	MGST2	chr4	140661366	+
5CDS-intron	ENST00000423432	ENST00000373583		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373573		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373589		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000429103		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373571		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000439122		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373560		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373559		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373561		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000478743		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373556		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000423432	ENST00000373554		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373583		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373573		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373589		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000429103		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373571		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000439122		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373560		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373559		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373561		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000478743		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373556		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000218432	ENST00000373554		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373583		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373573		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373589		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000429103		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373571		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000439122		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373560		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373559		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373561		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000478743		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373556		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
5CDS-intron	ENST00000373669	ENST00000373554		TCGA	LD	STAD	TCGA-BR-7715-01A	PIN4	chrX	71416754	+	HDAC8	chrX	71571688	-
Frame-shit	ENST00000181839	ENST00000403058		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
Frame-shit	ENST00000181839	ENST00000518318		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-3UTR	ENST00000181839	ENST00000517348		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-3UTR	ENST00000181839	ENST00000559001		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-intron	ENST00000181839	ENST00000464276		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
Frame-shit	ENST00000340829	ENST00000403058		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
Frame-shit	ENST00000340829	ENST00000518318		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-3UTR	ENST00000340829	ENST00000517348		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-3UTR	ENST00000340829	ENST00000559001		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-intron	ENST00000340829	ENST00000464276		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
intron-3CDS	ENST00000484589	ENST00000403058		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
intron-3CDS	ENST00000484589	ENST00000518318		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
intron-3UTR	ENST00000484589	ENST00000517348		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
intron-3UTR	ENST00000484589	ENST00000559001		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
intron-intron	ENST00000484589	ENST00000464276		TCGA	LD	STAD	TCGA-BR-7716-01A	CDK13	chr7	40118450	+	POU6F2	chr7	39379241	+
5CDS-5UTR	ENST00000394003	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000394003	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000394003	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000394003	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-intron	ENST00000394003	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000361874	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000361874	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000361874	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000361874	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-intron	ENST00000361874	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000407639	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000407639	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000407639	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000407639	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-intron	ENST00000407639	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000409438	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000409438	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000409438	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000409438	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-intron	ENST00000409438	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409240	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409240	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409240	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409240	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-intron	ENST00000409240	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409868	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409868	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409868	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409868	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-intron	ENST00000409868	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409567	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409567	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409567	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-5UTR	ENST00000409567	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
5CDS-intron	ENST00000409567	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000495643	ENST00000290536		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000495643	ENST00000409585		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000495643	ENST00000536235		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-5UTR	ENST00000495643	ENST00000358434		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
intron-intron	ENST00000495643	ENST00000464686		TCGA	LD	STAD	TCGA-BR-7716-01A	DCTN1	chr2	74605127	-	M1AP	chr2	74867454	-
In-frame	ENST00000406610	ENST00000484157		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000406610	ENST00000303343		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000406610	ENST00000368404		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000406610	ENST00000368401		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
5CDS-3UTR	ENST00000406610	ENST00000368405		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000462231	ENST00000484157		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000462231	ENST00000303343		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000462231	ENST00000368404		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000462231	ENST00000368401		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
5CDS-3UTR	ENST00000462231	ENST00000368405		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000349953	ENST00000484157		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000349953	ENST00000303343		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000349953	ENST00000368404		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000349953	ENST00000368401		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
5CDS-3UTR	ENST00000349953	ENST00000368405		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000358768	ENST00000484157		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000358768	ENST00000303343		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000358768	ENST00000368404		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000358768	ENST00000368401		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
5CDS-3UTR	ENST00000358768	ENST00000368405		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000351153	ENST00000484157		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000351153	ENST00000303343		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000351153	ENST00000368404		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000351153	ENST00000368401		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
5CDS-3UTR	ENST00000351153	ENST00000368405		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
intron-3CDS	ENST00000488622	ENST00000484157		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
intron-3CDS	ENST00000488622	ENST00000303343		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
intron-3CDS	ENST00000488622	ENST00000368404		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
intron-3CDS	ENST00000488622	ENST00000368401		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
intron-3UTR	ENST00000488622	ENST00000368405		TCGA	LD	STAD	TCGA-BR-7716-01A	PARD3B	chr2	205410842	+	SLC50A1	chr1	155110455	+
In-frame	ENST00000377921	ENST00000402038		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
5CDS-intron	ENST00000377921	ENST00000492350		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
Frame-shit	ENST00000345264	ENST00000402038		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
5CDS-intron	ENST00000345264	ENST00000492350		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
Frame-shit	ENST00000602389	ENST00000402038		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
5CDS-intron	ENST00000602389	ENST00000492350		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
5UTR-3CDS	ENST00000464074	ENST00000402038		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
5UTR-intron	ENST00000464074	ENST00000492350		TCGA	LD	STAD	TCGA-BR-7716-01A	RSU1	chr10	16794538	-	PARG	chr10	51051678	-
5UTR-3CDS	ENST00000375400	ENST00000344293		TCGA	LD	STAD	TCGA-BR-7716-01A	SVIL	chr10	29946898	-	TAF3	chr10	8005883	+
5UTR-3CDS	ENST00000375398	ENST00000344293		TCGA	LD	STAD	TCGA-BR-7716-01A	SVIL	chr10	29946898	-	TAF3	chr10	8005883	+
intron-3CDS	ENST00000355867	ENST00000344293		TCGA	LD	STAD	TCGA-BR-7716-01A	SVIL	chr10	29946898	-	TAF3	chr10	8005883	+
intron-3CDS	ENST00000535393	ENST00000344293		TCGA	LD	STAD	TCGA-BR-7716-01A	SVIL	chr10	29946898	-	TAF3	chr10	8005883	+
intron-3CDS	ENST00000460007	ENST00000344293		TCGA	LD	STAD	TCGA-BR-7716-01A	SVIL	chr10	29946898	-	TAF3	chr10	8005883	+
intron-3CDS	ENST00000538146	ENST00000344293		TCGA	LD	STAD	TCGA-BR-7716-01A	SVIL	chr10	29946898	-	TAF3	chr10	8005883	+
In-frame	ENST00000314787	ENST00000458501		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000314787	ENST00000379644		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000314787	ENST00000297798		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000314787	ENST00000521576		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000426190	ENST00000458501		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000426190	ENST00000379644		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000426190	ENST00000297798		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000426190	ENST00000521576		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000519088	ENST00000458501		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000519088	ENST00000379644		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000519088	ENST00000297798		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
In-frame	ENST00000519088	ENST00000521576		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
intron-3CDS	ENST00000520018	ENST00000458501		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
intron-3CDS	ENST00000520018	ENST00000379644		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
intron-3CDS	ENST00000520018	ENST00000297798		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
intron-3CDS	ENST00000520018	ENST00000521576		TCGA	LD	STAD	TCGA-BR-7717-01A	PINX1	chr8	10683662	-	HGSNAT	chr8	43037288	+
Frame-shit	ENST00000475243	ENST00000356208		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
Frame-shit	ENST00000475243	ENST00000440234		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
5CDS-5UTR	ENST00000475243	ENST00000371219		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
Frame-shit	ENST00000395802	ENST00000356208		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
Frame-shit	ENST00000395802	ENST00000440234		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
5CDS-5UTR	ENST00000395802	ENST00000371219		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
3UTR-3CDS	ENST00000265619	ENST00000356208		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
3UTR-3CDS	ENST00000265619	ENST00000440234		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
3UTR-5UTR	ENST00000265619	ENST00000371219		TCGA	LD	STAD	TCGA-BR-7717-01A	VAPB	chr20	56964573	+	RBM38	chr20	55967710	+
Frame-shit	ENST00000399410	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399410	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399410	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399410	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000349029	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000349029	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000349029	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000349029	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000351154	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000351154	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000351154	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000351154	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399408	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399408	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000399408	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000399408	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000345148	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000345148	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000345148	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000345148	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000346370	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000346370	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
Frame-shit	ENST00000346370	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000346370	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000576557	ENST00000315677		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000576557	ENST00000581527		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-3CDS	ENST00000576557	ENST00000400147		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000400149		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000400155		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000400150		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000584874		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000534970		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000539435		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000581699		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000400145		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000515196		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
intron-intron	ENST00000576557	ENST00000478161		TCGA	LD	STAD	TCGA-BR-7723-01A	ABCC1	chr16	16043656	+	DLGAP1	chr18	3582246	-
5CDS-intron	ENST00000217402	ENST00000540582		TCGA	LD	STAD	TCGA-BR-7723-01A	CHMP4B	chr20	32399464	+	EDEM2	chr20	33703736	-
5CDS-intron	ENST00000217402	ENST00000374491		TCGA	LD	STAD	TCGA-BR-7723-01A	CHMP4B	chr20	32399464	+	EDEM2	chr20	33703736	-
5CDS-intron	ENST00000217402	ENST00000374492		TCGA	LD	STAD	TCGA-BR-7723-01A	CHMP4B	chr20	32399464	+	EDEM2	chr20	33703736	-
5CDS-intron	ENST00000217402	ENST00000541621		TCGA	LD	STAD	TCGA-BR-7723-01A	CHMP4B	chr20	32399464	+	EDEM2	chr20	33703736	-
5CDS-intron	ENST00000217402	ENST00000542871		TCGA	LD	STAD	TCGA-BR-7723-01A	CHMP4B	chr20	32399464	+	EDEM2	chr20	33703736	-
In-frame	ENST00000278980	ENST00000246186		TCGA	LD	STAD	TCGA-BR-7723-01A	COMMD7	chr20	31315700	-	MMP24	chr20	33851594	+
In-frame	ENST00000446419	ENST00000246186		TCGA	LD	STAD	TCGA-BR-7723-01A	COMMD7	chr20	31315700	-	MMP24	chr20	33851594	+
In-frame	ENST00000405486	ENST00000377560		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
In-frame	ENST00000405486	ENST00000430131		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
In-frame	ENST00000405486	ENST00000550722		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
5CDS-intron	ENST00000405486	ENST00000549141		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000356244	ENST00000377560		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000356244	ENST00000430131		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000356244	ENST00000550722		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
5CDS-intron	ENST00000356244	ENST00000549141		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000455915	ENST00000377560		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000455915	ENST00000430131		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000455915	ENST00000550722		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
5CDS-intron	ENST00000455915	ENST00000549141		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000407260	ENST00000377560		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000407260	ENST00000430131		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
Frame-shit	ENST00000407260	ENST00000550722		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
5CDS-intron	ENST00000407260	ENST00000549141		TCGA	LD	STAD	TCGA-BR-7723-01A	RANGAP1	chr22	41670604	-	HECTD4	chr12	112646434	-
In-frame	ENST00000299563	ENST00000263681		TCGA	LD	STAD	TCGA-BR-7723-01A	RNF169	chr11	74500744	+	POLD3	chr11	74322544	+
In-frame	ENST00000299563	ENST00000527458		TCGA	LD	STAD	TCGA-BR-7723-01A	RNF169	chr11	74500744	+	POLD3	chr11	74322544	+
5CDS-5UTR	ENST00000299563	ENST00000532497		TCGA	LD	STAD	TCGA-BR-7723-01A	RNF169	chr11	74500744	+	POLD3	chr11	74322544	+
5CDS-intron	ENST00000299563	ENST00000532784		TCGA	LD	STAD	TCGA-BR-7723-01A	RNF169	chr11	74500744	+	POLD3	chr11	74322544	+
intron-3CDS	ENST00000449833	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000449833	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000449833	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000409161	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000409161	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000409161	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000423696	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000423696	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000423696	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
Frame-shit	ENST00000338508	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
Frame-shit	ENST00000338508	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
Frame-shit	ENST00000338508	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000409530	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000409530	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000409530	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000449116	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000449116	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000449116	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000357171	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000357171	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000357171	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000468619	ENST00000446702		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000468619	ENST00000539053		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
intron-3CDS	ENST00000468619	ENST00000350110		TCGA	LD	STAD	TCGA-BR-7723-01A	SHANK2	chr11	70858166	-	CNTN6	chr3	1320097	+
5UTR-3CDS	ENST00000550831	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000550831	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000550831	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000550831	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000355445	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000355445	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000355445	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000355445	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000354825	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000354825	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000354825	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000354825	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000437003	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000437003	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000437003	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000437003	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552374	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552374	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552374	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552374	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000549537	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000549537	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000549537	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000549537	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552839	ENST00000405486		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552839	ENST00000356244		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552839	ENST00000455915		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
5UTR-3CDS	ENST00000552839	ENST00000407260		TCGA	LD	STAD	TCGA-BR-7723-01A	TMEM116	chr12	112450806	-	RANGAP1	chr22	41664160	-
In-frame	ENST00000334690	ENST00000403733		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000334690	ENST00000378925		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000334690	ENST00000513834		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000334690	ENST00000448232		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000334690	ENST00000504005		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000334690	ENST00000506225		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000334690	ENST00000508747		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
In-frame	ENST00000357207	ENST00000403733		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000357207	ENST00000378925		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000357207	ENST00000513834		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000357207	ENST00000448232		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000357207	ENST00000504005		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000357207	ENST00000506225		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000357207	ENST00000508747		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-3CDS	ENST00000511409	ENST00000403733		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-intron	ENST00000511409	ENST00000378925		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-intron	ENST00000511409	ENST00000513834		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-intron	ENST00000511409	ENST00000448232		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-intron	ENST00000511409	ENST00000504005		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-intron	ENST00000511409	ENST00000506225		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
intron-intron	ENST00000511409	ENST00000508747		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
In-frame	ENST00000512476	ENST00000403733		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000512476	ENST00000378925		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000512476	ENST00000513834		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000512476	ENST00000448232		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000512476	ENST00000504005		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000512476	ENST00000506225		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
5CDS-intron	ENST00000512476	ENST00000508747		TCGA	LD	STAD	TCGA-BR-7723-01A	TRAPPC11	chr4	184607901	+	WWC2	chr4	184201929	+
Frame-shit	ENST00000377809	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000377809	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000377809	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000402010	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000402010	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000402010	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000413835	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000413835	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000413835	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-3CDS	ENST00000377810	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-3CDS	ENST00000377810	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5UTR-intron	ENST00000377810	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000315032	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000315032	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000315032	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000508192	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000508192	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000508192	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000361128	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000361128	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000361128	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000350490	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000350490	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000350490	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000502399	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000502399	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000502399	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000509502	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000509502	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000509502	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000513765	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000513765	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000513765	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000408948	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000408948	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000408948	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000425897	ENST00000341307		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000425897	ENST00000356000		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000538995		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000377819		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000339997		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000540798		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000537981		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-intron	ENST00000425897	ENST00000354497		TCGA	LD	STAD	TCGA-BR-7851-01A	MARK2	chr11	63607032	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000263377	ENST00000389395		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-3UTR	ENST00000263377	ENST00000398558		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-intron	ENST00000263377	ENST00000355415		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-intron	ENST00000263377	ENST00000591878		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-3CDS	ENST00000371835	ENST00000389395		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-3UTR	ENST00000371835	ENST00000398558		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-intron	ENST00000371835	ENST00000355415		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-intron	ENST00000371835	ENST00000591878		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
5UTR-3CDS	ENST00000360016	ENST00000389395		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
5UTR-3UTR	ENST00000360016	ENST00000398558		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
5UTR-intron	ENST00000360016	ENST00000355415		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
5UTR-intron	ENST00000360016	ENST00000591878		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-3CDS	ENST00000602230	ENST00000389395		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-3UTR	ENST00000602230	ENST00000398558		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-intron	ENST00000602230	ENST00000355415		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
intron-intron	ENST00000602230	ENST00000591878		TCGA	LD	STAD	TCGA-BR-7901-01A	BRD4	chr19	15443101	-	MFSD12	chr19	3538754	-
In-frame	ENST00000225428	ENST00000315392		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000225428	ENST00000493200		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000225428	ENST00000539608		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000225428	ENST00000444911		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000225428	ENST00000394316		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
Frame-shit	ENST00000536127	ENST00000315392		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000536127	ENST00000493200		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000536127	ENST00000539608		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000536127	ENST00000444911		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
5CDS-5UTR	ENST00000536127	ENST00000394316		TCGA	LD	STAD	TCGA-BR-7901-01A	CWC25	chr17	36969048	-	PLXDC1	chr17	37265644	-
intron-3CDS	ENST00000361740	ENST00000263245		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000361740	ENST00000429508		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000361740	ENST00000437119		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000396303	ENST00000263245		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000396303	ENST00000429508		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000396303	ENST00000437119		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000352397	ENST00000263245		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000352397	ENST00000429508		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000352397	ENST00000437119		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000407623	ENST00000263245		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000407623	ENST00000429508		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000407623	ENST00000437119		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000407332	ENST00000263245		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000407332	ENST00000429508		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000407332	ENST00000437119		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000402438	ENST00000263245		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000402438	ENST00000429508		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
intron-3CDS	ENST00000402438	ENST00000437119		TCGA	LD	STAD	TCGA-BR-7901-01A	CYB5R3	chr22	43045301	-	ARFGAP3	chr22	43195166	-
Frame-shit	ENST00000263266	ENST00000263278		TCGA	LD	STAD	TCGA-BR-7901-01A	FAM83E	chr19	49113133	-	HSD17B14	chr19	49318398	-
Frame-shit	ENST00000263266	ENST00000599157		TCGA	LD	STAD	TCGA-BR-7901-01A	FAM83E	chr19	49113133	-	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000595110	ENST00000263278		TCGA	LD	STAD	TCGA-BR-7901-01A	FAM83E	chr19	49113133	-	HSD17B14	chr19	49318398	-
intron-3CDS	ENST00000595110	ENST00000599157		TCGA	LD	STAD	TCGA-BR-7901-01A	FAM83E	chr19	49113133	-	HSD17B14	chr19	49318398	-
5CDS-intron	ENST00000338368	ENST00000297423		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000338368	ENST00000518074		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000338368	ENST00000541342		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-3UTR	ENST00000338368	ENST00000521214		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000338368	ENST00000517693		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000338368	ENST00000518060		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000314191	ENST00000297423		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000314191	ENST00000518074		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000314191	ENST00000541342		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-3UTR	ENST00000314191	ENST00000521214		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000314191	ENST00000517693		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5CDS-intron	ENST00000314191	ENST00000518060		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5UTR-intron	ENST00000523565	ENST00000297423		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5UTR-intron	ENST00000523565	ENST00000518074		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5UTR-intron	ENST00000523565	ENST00000541342		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5UTR-3UTR	ENST00000523565	ENST00000521214		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5UTR-intron	ENST00000523565	ENST00000517693		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
5UTR-intron	ENST00000523565	ENST00000518060		TCGA	LD	STAD	TCGA-BR-7901-01A	PRKDC	chr8	48746757	-	SPIDR	chr8	48191858	+
In-frame	ENST00000338086	ENST00000281405		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000338086	ENST00000345530		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000338086	ENST00000416055		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000319801	ENST00000281405		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000319801	ENST00000345530		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000319801	ENST00000416055		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000361078	ENST00000281405		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000361078	ENST00000345530		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
In-frame	ENST00000361078	ENST00000416055		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-3CDS	ENST00000536417	ENST00000281405		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-3CDS	ENST00000536417	ENST00000345530		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-3CDS	ENST00000536417	ENST00000416055		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
Frame-shit	ENST00000403432	ENST00000281405		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
Frame-shit	ENST00000403432	ENST00000345530		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
Frame-shit	ENST00000403432	ENST00000416055		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-3CDS	ENST00000420234	ENST00000281405		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-3CDS	ENST00000420234	ENST00000345530		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-3CDS	ENST00000420234	ENST00000416055		TCGA	LD	STAD	TCGA-BR-7901-01A	PUM2	chr2	20527071	-	WDR35	chr2	20130313	-
5UTR-5UTR	ENST00000373715	ENST00000573319		TCGA	LD	STAD	TCGA-BR-7901-01A	SRSF3	chr6	36562258	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000339436	ENST00000573319		TCGA	LD	STAD	TCGA-BR-7901-01A	SRSF3	chr6	36562258	+	BCAR4	chr16	11914154	-
intron-intron	ENST00000360957	ENST00000229824		TCGA	LD	STAD	TCGA-BR-7958-01A	PPP1R13L	chr19	45899933	-	RAB44	chr6	36700450	+
intron-intron	ENST00000418234	ENST00000229824		TCGA	LD	STAD	TCGA-BR-7958-01A	PPP1R13L	chr19	45899933	-	RAB44	chr6	36700450	+
5CDS-5UTR	ENST00000556029	ENST00000548567		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000556029	ENST00000351328		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000556029	ENST00000542324		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000343315	ENST00000548567		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000343315	ENST00000351328		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000343315	ENST00000542324		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
intron-5UTR	ENST00000266732	ENST00000548567		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
intron-5UTR	ENST00000266732	ENST00000351328		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
intron-5UTR	ENST00000266732	ENST00000542324		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000393053	ENST00000548567		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000393053	ENST00000351328		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000393053	ENST00000542324		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000261210	ENST00000548567		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000261210	ENST00000351328		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
5CDS-5UTR	ENST00000261210	ENST00000542324		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
intron-5UTR	ENST00000548223	ENST00000548567		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
intron-5UTR	ENST00000548223	ENST00000351328		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
intron-5UTR	ENST00000548223	ENST00000542324		TCGA	LD	STAD	TCGA-BR-7959-01A	TMPO	chr12	98931350	+	CS	chr12	56680429	-
Frame-shit	ENST00000481110	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000440486	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000412135	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000340107	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000260795	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000352904	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
intron-3CDS	ENST00000474521	ENST00000313288		TCGA	LD	STAD	TCGA-BR-8058-01A	FGFR3	chr4	1808661	+	TACC3	chr4	1741429	+
In-frame	ENST00000609104	ENST00000256861		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
In-frame	ENST00000609104	ENST00000397146		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000609104	ENST00000298441		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-5UTR	ENST00000609104	ENST00000446830		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000609104	ENST00000434980		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000609104	ENST00000397145		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
In-frame	ENST00000277575	ENST00000256861		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
In-frame	ENST00000277575	ENST00000397146		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000277575	ENST00000298441		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-5UTR	ENST00000277575	ENST00000446830		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000277575	ENST00000434980		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000277575	ENST00000397145		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
In-frame	ENST00000379237	ENST00000256861		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
In-frame	ENST00000379237	ENST00000397146		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000379237	ENST00000298441		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-5UTR	ENST00000379237	ENST00000446830		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000379237	ENST00000434980		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
5CDS-intron	ENST00000379237	ENST00000397145		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-3CDS	ENST00000443016	ENST00000256861		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-3CDS	ENST00000443016	ENST00000397146		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-intron	ENST00000443016	ENST00000298441		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-5UTR	ENST00000443016	ENST00000446830		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-intron	ENST00000443016	ENST00000434980		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-intron	ENST00000443016	ENST00000397145		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-3CDS	ENST00000609853	ENST00000256861		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-3CDS	ENST00000609853	ENST00000397146		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-intron	ENST00000609853	ENST00000298441		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-5UTR	ENST00000609853	ENST00000446830		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-intron	ENST00000609853	ENST00000434980		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
intron-intron	ENST00000609853	ENST00000397145		TCGA	LD	STAD	TCGA-BR-8058-01A	USP6NL	chr10	11551594	-	ITIH5	chr10	7697638	-
Frame-shit	ENST00000263433	ENST00000263434		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
Frame-shit	ENST00000263433	ENST00000376350		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
5CDS-intron	ENST00000263433	ENST00000588559		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
Frame-shit	ENST00000376393	ENST00000263434		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
Frame-shit	ENST00000376393	ENST00000376350		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
5CDS-intron	ENST00000376393	ENST00000588559		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
Frame-shit	ENST00000435544	ENST00000263434		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
Frame-shit	ENST00000435544	ENST00000376350		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
5CDS-intron	ENST00000435544	ENST00000588559		TCGA	LD	STAD	TCGA-BR-8059-01A	PPP1R12C	chr19	55623835	-	PTPRH	chr19	55693519	-
5CDS-3UTR	ENST00000353139	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000353139	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000353139	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000353139	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000353139	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000353139	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000353139	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000353139	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000360679	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000360679	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000360679	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000360679	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000360679	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000360679	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000360679	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000360679	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000394406	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000394406	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000394406	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000394406	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000394406	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000394406	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000394406	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000394406	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000335166	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000335166	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000335166	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000335166	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000335166	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000335166	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000335166	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000335166	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000416895	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000416895	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000416895	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000416895	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000416895	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000416895	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000416895	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000416895	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000361253	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000361253	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000361253	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000361253	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000361253	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000361253	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000361253	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000361253	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000588142	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-3UTR	ENST00000588142	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000588142	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000588142	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000588142	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000588142	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000588142	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-intron	ENST00000588142	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000589665	ENST00000339208		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-3UTR	ENST00000589665	ENST00000346661		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000589665	ENST00000345615		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000589665	ENST00000502449		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000589665	ENST00000591288		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000589665	ENST00000394378		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000589665	ENST00000585472		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
intron-intron	ENST00000589665	ENST00000588194		TCGA	LD	STAD	TCGA-BR-8060-01A	ACACA	chr17	35687113	-	SYNRG	chr17	35877683	-
5CDS-5UTR	ENST00000357674	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000357674	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000357674	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000357674	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000357674	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000314062	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000314062	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000314062	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000314062	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000314062	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000346964	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000346964	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000346964	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000346964	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000346964	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000419354	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000419354	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000419354	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000419354	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000419354	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000452595	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-3UTR	ENST00000452595	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000452595	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000452595	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000452595	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000422288	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000422288	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000422288	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000422288	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000422288	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000448528	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000448528	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000448528	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000448528	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000448528	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000443183	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-3UTR	ENST00000443183	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000443183	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000443183	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
intron-5UTR	ENST00000443183	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000450955	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000450955	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000450955	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000450955	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000450955	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000392382	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-3UTR	ENST00000392382	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000392382	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000392382	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5CDS-5UTR	ENST00000392382	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5UTR-5UTR	ENST00000485409	ENST00000536223		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5UTR-3UTR	ENST00000485409	ENST00000488136		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5UTR-5UTR	ENST00000485409	ENST00000442371		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5UTR-5UTR	ENST00000485409	ENST00000444201		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
5UTR-5UTR	ENST00000485409	ENST00000376730		TCGA	LD	STAD	TCGA-BR-8060-01A	DLG1	chr3	197009550	-	GCNT1	chr9	79115832	+
Frame-shit	ENST00000465259	ENST00000305366		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
5CDS-intron	ENST00000465259	ENST00000472441		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
Frame-shit	ENST00000310053	ENST00000305366		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
5CDS-intron	ENST00000310053	ENST00000472441		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
Frame-shit	ENST00000392912	ENST00000305366		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
5CDS-intron	ENST00000392912	ENST00000472441		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
Frame-shit	ENST00000494055	ENST00000305366		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
5CDS-intron	ENST00000494055	ENST00000472441		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
intron-3CDS	ENST00000481663	ENST00000305366		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
intron-intron	ENST00000481663	ENST00000472441		TCGA	LD	STAD	TCGA-BR-8060-01A	HLTF	chr3	148759953	-	TM4SF1	chr3	149093556	-
In-frame	ENST00000329153	ENST00000487861		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
In-frame	ENST00000329153	ENST00000471583		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
In-frame	ENST00000329153	ENST00000487270		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
In-frame	ENST00000329153	ENST00000488612		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
In-frame	ENST00000329153	ENST00000390683		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
5CDS-3UTR	ENST00000329153	ENST00000469165		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000417684	ENST00000487861		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000417684	ENST00000471583		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000417684	ENST00000487270		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000417684	ENST00000488612		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000417684	ENST00000390683		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000417684	ENST00000469165		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000559832	ENST00000487861		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000559832	ENST00000471583		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000559832	ENST00000487270		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000559832	ENST00000488612		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000559832	ENST00000390683		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000559832	ENST00000469165		TCGA	LD	STAD	TCGA-BR-8060-01A	PLEKHH1	chr14	68026408	+	RAD51B	chr14	68758601	+
5UTR-3CDS	ENST00000418115	ENST00000480687		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000418115	ENST00000308375		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000418115	ENST00000308388		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000454011	ENST00000480687		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000454011	ENST00000308375		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000454011	ENST00000308388		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000422781	ENST00000480687		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000422781	ENST00000308375		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
5UTR-3CDS	ENST00000422781	ENST00000308388		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
intron-3CDS	ENST00000265538	ENST00000480687		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
intron-3CDS	ENST00000265538	ENST00000308375		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
intron-3CDS	ENST00000265538	ENST00000308388		TCGA	LD	STAD	TCGA-BR-8060-01A	RHOA	chr3	49449253	-	GMPPB	chr3	49759580	-
Frame-shit	ENST00000539449	ENST00000369046		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
5CDS-intron	ENST00000539449	ENST00000467262		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
5CDS-intron	ENST00000539449	ENST00000369044		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
In-frame	ENST00000369063	ENST00000369046		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
5CDS-intron	ENST00000369063	ENST00000467262		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
5CDS-intron	ENST00000369063	ENST00000369044		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
intron-3CDS	ENST00000498091	ENST00000369046		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
intron-intron	ENST00000498091	ENST00000467262		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
intron-intron	ENST00000498091	ENST00000369044		TCGA	LD	STAD	TCGA-BR-8060-01A	RTN4IP1	chr6	107067077	-	QRSL1	chr6	107110855	+
5UTR-3CDS	ENST00000437079	ENST00000318351		TCGA	LD	STAD	TCGA-BR-8060-01A	VPS8	chr3	184530013	+	HTR3C	chr3	183773100	+
5UTR-3CDS	ENST00000287546	ENST00000318351		TCGA	LD	STAD	TCGA-BR-8060-01A	VPS8	chr3	184530013	+	HTR3C	chr3	183773100	+
5UTR-3CDS	ENST00000436792	ENST00000318351		TCGA	LD	STAD	TCGA-BR-8060-01A	VPS8	chr3	184530013	+	HTR3C	chr3	183773100	+
5UTR-3CDS	ENST00000446204	ENST00000318351		TCGA	LD	STAD	TCGA-BR-8060-01A	VPS8	chr3	184530013	+	HTR3C	chr3	183773100	+
intron-3CDS	ENST00000424463	ENST00000318351		TCGA	LD	STAD	TCGA-BR-8060-01A	VPS8	chr3	184530013	+	HTR3C	chr3	183773100	+
intron-3CDS	ENST00000463687	ENST00000318351		TCGA	LD	STAD	TCGA-BR-8060-01A	VPS8	chr3	184530013	+	HTR3C	chr3	183773100	+
In-frame	ENST00000367590	ENST00000327300		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000367590	ENST00000307714		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000367590	ENST00000492989		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
In-frame	ENST00000367589	ENST00000327300		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000367589	ENST00000307714		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
5CDS-3UTR	ENST00000367589	ENST00000492989		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
intron-3CDS	ENST00000467345	ENST00000327300		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000467345	ENST00000307714		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
intron-3UTR	ENST00000467345	ENST00000492989		TCGA	LD	STAD	TCGA-BR-8060-01A	XPR1	chr1	180651547	+	KHDRBS1	chr1	32495899	+
5UTR-3CDS	ENST00000443035	ENST00000292901		TCGA	LD	STAD	TCGA-BR-8077-01A	DENND4A	chr15	66084348	-	HBD	chr11	5255443	-
5UTR-3CDS	ENST00000443035	ENST00000380299		TCGA	LD	STAD	TCGA-BR-8077-01A	DENND4A	chr15	66084348	-	HBD	chr11	5255443	-
5UTR-3CDS	ENST00000431932	ENST00000292901		TCGA	LD	STAD	TCGA-BR-8077-01A	DENND4A	chr15	66084348	-	HBD	chr11	5255443	-
5UTR-3CDS	ENST00000431932	ENST00000380299		TCGA	LD	STAD	TCGA-BR-8077-01A	DENND4A	chr15	66084348	-	HBD	chr11	5255443	-
intron-3CDS	ENST00000567323	ENST00000292901		TCGA	LD	STAD	TCGA-BR-8077-01A	DENND4A	chr15	66084348	-	HBD	chr11	5255443	-
intron-3CDS	ENST00000567323	ENST00000380299		TCGA	LD	STAD	TCGA-BR-8077-01A	DENND4A	chr15	66084348	-	HBD	chr11	5255443	-
In-frame	ENST00000366514	ENST00000541742		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
In-frame	ENST00000366514	ENST00000490107		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
In-frame	ENST00000366514	ENST00000388985		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000366514	ENST00000366517		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000366514	ENST00000403792		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
In-frame	ENST00000544618	ENST00000541742		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
In-frame	ENST00000544618	ENST00000490107		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
In-frame	ENST00000544618	ENST00000388985		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
5CDS-5UTR	ENST00000544618	ENST00000366517		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
5CDS-intron	ENST00000544618	ENST00000403792		TCGA	LD	STAD	TCGA-BR-8077-01A	TFB2M	chr1	246727648	-	SMYD3	chr1	246093239	-
intron-3CDS	ENST00000327791	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000327791	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000327791	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000442791	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000442791	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000442791	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000534854	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000534854	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000534854	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000380790	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000380790	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000380790	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000380788	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000380788	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000380788	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000541702	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000541702	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000541702	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000555248	ENST00000266529		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-3CDS	ENST00000555248	ENST00000552673		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
intron-intron	ENST00000555248	ENST00000551102		TCGA	LD	STAD	TCGA-BR-8077-01A	YAF2	chr12	42604157	-	ZCRB1	chr12	42707788	-
5CDS-intron	ENST00000416426	ENST00000582674		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000416426	ENST00000328381		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000416426	ENST00000443677		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000416426	ENST00000324689		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000416426	ENST00000535306		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000284073	ENST00000582674		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000284073	ENST00000328381		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000284073	ENST00000443677		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000284073	ENST00000324689		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000284073	ENST00000535306		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000322684	ENST00000582674		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000322684	ENST00000328381		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000322684	ENST00000443677		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000322684	ENST00000324689		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000322684	ENST00000535306		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000442934	ENST00000582674		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000442934	ENST00000328381		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000442934	ENST00000443677		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000442934	ENST00000324689		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000442934	ENST00000535306		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000579180	ENST00000582674		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000579180	ENST00000328381		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000579180	ENST00000443677		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000579180	ENST00000324689		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
5CDS-intron	ENST00000579180	ENST00000535306		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
intron-intron	ENST00000579505	ENST00000582674		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
intron-intron	ENST00000579505	ENST00000328381		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
intron-intron	ENST00000579505	ENST00000443677		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
intron-intron	ENST00000579505	ENST00000324689		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
intron-intron	ENST00000579505	ENST00000535306		TCGA	LD	STAD	TCGA-BR-8080-01A	MSI2	chr17	55478832	+	RNF135	chr17	29311635	+
Frame-shit	ENST00000356175	ENST00000389934		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000356175	ENST00000349033		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000356175	ENST00000240361		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
5CDS-intron	ENST00000356175	ENST00000584699		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000358273	ENST00000389934		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000358273	ENST00000349033		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000358273	ENST00000240361		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
5CDS-intron	ENST00000358273	ENST00000584699		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000431387	ENST00000389934		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000431387	ENST00000349033		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000431387	ENST00000240361		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
5CDS-intron	ENST00000431387	ENST00000584699		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000581113	ENST00000389934		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000581113	ENST00000349033		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000581113	ENST00000240361		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-intron	ENST00000581113	ENST00000584699		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000417592	ENST00000389934		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000417592	ENST00000349033		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000417592	ENST00000240361		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-intron	ENST00000417592	ENST00000584699		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000444181	ENST00000389934		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000444181	ENST00000349033		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-3CDS	ENST00000444181	ENST00000240361		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
intron-intron	ENST00000444181	ENST00000584699		TCGA	LD	STAD	TCGA-BR-8080-01A	NF1	chr17	29486111	+	TEX14	chr17	56661961	-
Frame-shit	ENST00000344749	ENST00000588427		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000436106		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000588871		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000427685		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000588849		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000586564		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000592872		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000585675		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000344749	ENST00000591027		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
Frame-shit	ENST00000262965	ENST00000588427		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000436106		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000588871		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000427685		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000588849		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000586564		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000592872		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000585675		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000262965	ENST00000591027		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
In-frame	ENST00000453954	ENST00000588427		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000436106		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000588871		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000427685		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000588849		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000586564		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000592872		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000585675		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000453954	ENST00000591027		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
Frame-shit	ENST00000395423	ENST00000588427		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000436106		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000588871		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000427685		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000588849		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000586564		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000592872		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000585675		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000395423	ENST00000591027		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
In-frame	ENST00000588136	ENST00000588427		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000436106		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000588871		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000427685		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000588849		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000586564		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000592872		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000585675		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
5CDS-intron	ENST00000588136	ENST00000591027		TCGA	LD	STAD	TCGA-BR-8080-01A	TCF3	chr19	1619110	-	C19orf25	chr19	1461823	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-BR-8284-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-BR-8284-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-BR-8284-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-BR-8284-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-BR-8284-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-BR-8284-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000342704	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
In-frame	ENST00000342704	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
In-frame	ENST00000342704	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
5CDS-5UTR	ENST00000342704	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
5UTR-3CDS	ENST00000375279	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
5UTR-3CDS	ENST00000375279	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
5UTR-3CDS	ENST00000375279	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
5UTR-5UTR	ENST00000375279	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000344201	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000344201	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000344201	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000344201	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000397798	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000397798	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000397798	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000397798	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000346541	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000346541	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000346541	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000346541	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000397800	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000397800	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000397800	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000397800	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000492345	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000492345	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000492345	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000492345	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000359606	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000359606	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000359606	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000359606	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000491618	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000491618	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000491618	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000491618	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000543126	ENST00000293217		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000543126	ENST00000537812		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-3CDS	ENST00000543126	ENST00000301608		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
intron-5UTR	ENST00000543126	ENST00000591857		TCGA	LD	STAD	TCGA-BR-8289-01A	CBFA2T2	chr20	32078107	+	ACOX1	chr17	73953647	-
5CDS-intron	ENST00000283882	ENST00000332272		TCGA	LD	STAD	TCGA-BR-8289-01A	CFDP1	chr16	75428988	-	CHST6	chr16	75507365	-
5CDS-intron	ENST00000283882	ENST00000390664		TCGA	LD	STAD	TCGA-BR-8289-01A	CFDP1	chr16	75428988	-	CHST6	chr16	75507365	-
intron-intron	ENST00000564286	ENST00000332272		TCGA	LD	STAD	TCGA-BR-8289-01A	CFDP1	chr16	75428988	-	CHST6	chr16	75507365	-
intron-intron	ENST00000564286	ENST00000390664		TCGA	LD	STAD	TCGA-BR-8289-01A	CFDP1	chr16	75428988	-	CHST6	chr16	75507365	-
5CDS-5UTR	ENST00000373954	ENST00000374024		TCGA	LD	STAD	TCGA-BR-8289-01A	FAM76A	chr1	28075665	+	GPR3	chr1	27720298	+
intron-5UTR	ENST00000419687	ENST00000374024		TCGA	LD	STAD	TCGA-BR-8289-01A	FAM76A	chr1	28075665	+	GPR3	chr1	27720298	+
5CDS-5UTR	ENST00000530324	ENST00000374024		TCGA	LD	STAD	TCGA-BR-8289-01A	FAM76A	chr1	28075665	+	GPR3	chr1	27720298	+
intron-5UTR	ENST00000234549	ENST00000374024		TCGA	LD	STAD	TCGA-BR-8289-01A	FAM76A	chr1	28075665	+	GPR3	chr1	27720298	+
intron-5UTR	ENST00000373949	ENST00000374024		TCGA	LD	STAD	TCGA-BR-8289-01A	FAM76A	chr1	28075665	+	GPR3	chr1	27720298	+
5CDS-5UTR	ENST00000010299	ENST00000374024		TCGA	LD	STAD	TCGA-BR-8289-01A	FAM76A	chr1	28075665	+	GPR3	chr1	27720298	+
5UTR-3CDS	ENST00000374497	ENST00000246151		TCGA	LD	STAD	TCGA-BR-8289-01A	GALE	chr1	24125858	-	PITHD1	chr1	24112163	+
5UTR-5UTR	ENST00000374497	ENST00000374524		TCGA	LD	STAD	TCGA-BR-8289-01A	GALE	chr1	24125858	-	PITHD1	chr1	24112163	+
5UTR-3CDS	ENST00000470383	ENST00000246151		TCGA	LD	STAD	TCGA-BR-8289-01A	GALE	chr1	24125858	-	PITHD1	chr1	24112163	+
5UTR-5UTR	ENST00000470383	ENST00000374524		TCGA	LD	STAD	TCGA-BR-8289-01A	GALE	chr1	24125858	-	PITHD1	chr1	24112163	+
intron-3CDS	ENST00000295731	ENST00000409720		TCGA	LD	STAD	TCGA-BR-8289-01A	IHH	chr2	219920538	-	NHEJ1	chr2	219942928	-
intron-3CDS	ENST00000295731	ENST00000356853		TCGA	LD	STAD	TCGA-BR-8289-01A	IHH	chr2	219920538	-	NHEJ1	chr2	219942928	-
intron-5UTR	ENST00000295731	ENST00000483627		TCGA	LD	STAD	TCGA-BR-8289-01A	IHH	chr2	219920538	-	NHEJ1	chr2	219942928	-
In-frame	ENST00000399788	ENST00000305108		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
In-frame	ENST00000399788	ENST00000397265		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000542920		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000399788	ENST00000433832		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000399788	ENST00000537416		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000305108		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000540838	ENST00000397265		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000542920		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
intron-5UTR	ENST00000540838	ENST00000433832		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
intron-intron	ENST00000540838	ENST00000537416		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000305108		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
In-frame	ENST00000382815	ENST00000397265		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000542920		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
5CDS-5UTR	ENST00000382815	ENST00000433832		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
5CDS-intron	ENST00000382815	ENST00000537416		TCGA	LD	STAD	TCGA-BR-8289-01A	KDM5A	chr12	459787	-	NINJ2	chr12	675344	-
intron-3CDS	ENST00000447063	ENST00000356539		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-3CDS	ENST00000447063	ENST00000470811		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000447063	ENST00000477399		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000447063	ENST00000489350		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000447063	ENST00000491763		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000447063	ENST00000498839		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000447063	ENST00000483177		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-3CDS	ENST00000524591	ENST00000356539		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-3CDS	ENST00000524591	ENST00000470811		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000524591	ENST00000477399		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000524591	ENST00000489350		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000524591	ENST00000491763		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000524591	ENST00000498839		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
intron-intron	ENST00000524591	ENST00000483177		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-3CDS	ENST00000528335	ENST00000356539		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-3CDS	ENST00000528335	ENST00000470811		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-intron	ENST00000528335	ENST00000477399		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-intron	ENST00000528335	ENST00000489350		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-intron	ENST00000528335	ENST00000491763		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-intron	ENST00000528335	ENST00000498839		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-intron	ENST00000528335	ENST00000483177		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-3CDS	ENST00000400069	ENST00000356539		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-3CDS	ENST00000400069	ENST00000470811		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000400069	ENST00000477399		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000400069	ENST00000489350		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000400069	ENST00000491763		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000400069	ENST00000498839		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000400069	ENST00000483177		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-3CDS	ENST00000528753	ENST00000356539		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-3CDS	ENST00000528753	ENST00000470811		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000528753	ENST00000477399		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000528753	ENST00000489350		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000528753	ENST00000491763		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000528753	ENST00000498839		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
5UTR-intron	ENST00000528753	ENST00000483177		TCGA	LD	STAD	TCGA-BR-8289-01A	KIAA1456	chr8	12809867	+	LEKR1	chr3	156763129	+
3UTR-3CDS	ENST00000475249	ENST00000266126		TCGA	LD	STAD	TCGA-BR-8289-01A	PPP1R1C	chr2	182819361	+	EIF2B2	chr14	75469978	+
intron-3CDS	ENST00000452904	ENST00000266126		TCGA	LD	STAD	TCGA-BR-8289-01A	PPP1R1C	chr2	182819361	+	EIF2B2	chr14	75469978	+
intron-3CDS	ENST00000409137	ENST00000266126		TCGA	LD	STAD	TCGA-BR-8289-01A	PPP1R1C	chr2	182819361	+	EIF2B2	chr14	75469978	+
intron-3CDS	ENST00000280295	ENST00000266126		TCGA	LD	STAD	TCGA-BR-8289-01A	PPP1R1C	chr2	182819361	+	EIF2B2	chr14	75469978	+
intron-3CDS	ENST00000409702	ENST00000266126		TCGA	LD	STAD	TCGA-BR-8289-01A	PPP1R1C	chr2	182819361	+	EIF2B2	chr14	75469978	+
5UTR-5UTR	ENST00000332029	ENST00000573319		TCGA	LD	STAD	TCGA-BR-8289-01A	SOCS1	chr16	11349936	-	BCAR4	chr16	11914154	-
intron-3CDS	ENST00000585748	ENST00000346916		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
intron-5UTR	ENST00000585748	ENST00000545507		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
intron-5UTR	ENST00000585748	ENST00000333511		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
intron-5UTR	ENST00000585748	ENST00000353555		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
intron-intron	ENST00000585748	ENST00000574970		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
In-frame	ENST00000326873	ENST00000346916		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
5CDS-5UTR	ENST00000326873	ENST00000545507		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
5CDS-5UTR	ENST00000326873	ENST00000333511		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
5CDS-5UTR	ENST00000326873	ENST00000353555		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
5CDS-intron	ENST00000326873	ENST00000574970		TCGA	LD	STAD	TCGA-BR-8289-01A	STK11	chr19	1207202	+	BSG	chr19	580379	+
Frame-shit	ENST00000451292	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000451292	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000451292	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000377797	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000377797	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000377797	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000445265	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000445265	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000445265	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000323668	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000323668	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000323668	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000439160	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000439160	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000439160	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000394269	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000394269	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000394269	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000504761	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000504761	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000504761	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
Frame-shit	ENST00000513346	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-3UTR	ENST00000513346	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000513346	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
intron-3CDS	ENST00000506063	ENST00000388825		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
intron-3UTR	ENST00000506063	ENST00000521722		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
intron-intron	ENST00000506063	ENST00000517973		TCGA	LD	STAD	TCGA-BR-8289-01A	TCOF1	chr5	149740774	+	GPX3	chr5	150404901	+
5CDS-intron	ENST00000215567	ENST00000393029		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5CDS-intron	ENST00000215567	ENST00000393028		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5CDS-5UTR	ENST00000215567	ENST00000345425		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5CDS-5UTR	ENST00000215567	ENST00000393033		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5CDS-intron	ENST00000215567	ENST00000591349		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5CDS-5UTR	ENST00000215567	ENST00000586027		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000596073	ENST00000393029		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000596073	ENST00000393028		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000596073	ENST00000345425		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000596073	ENST00000393033		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000596073	ENST00000591349		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000596073	ENST00000586027		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000600083	ENST00000393029		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000600083	ENST00000393028		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000600083	ENST00000345425		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000600083	ENST00000393033		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000600083	ENST00000591349		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000600083	ENST00000586027		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000436007	ENST00000393029		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000436007	ENST00000393028		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000436007	ENST00000345425		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000436007	ENST00000393033		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-intron	ENST00000436007	ENST00000591349		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
5UTR-5UTR	ENST00000436007	ENST00000586027		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
3UTR-intron	ENST00000596164	ENST00000393029		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
3UTR-intron	ENST00000596164	ENST00000393028		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
3UTR-5UTR	ENST00000596164	ENST00000345425		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
3UTR-5UTR	ENST00000596164	ENST00000393033		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
3UTR-intron	ENST00000596164	ENST00000591349		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
3UTR-5UTR	ENST00000596164	ENST00000586027		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	GIPC1	chr19	14593818	-
Frame-shit	ENST00000215567	ENST00000565886		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5CDS-3UTR	ENST00000215567	ENST00000564348		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5UTR-3CDS	ENST00000596073	ENST00000565886		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5UTR-3UTR	ENST00000596073	ENST00000564348		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5UTR-3CDS	ENST00000600083	ENST00000565886		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5UTR-3UTR	ENST00000600083	ENST00000564348		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5UTR-3CDS	ENST00000436007	ENST00000565886		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
5UTR-3UTR	ENST00000436007	ENST00000564348		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
3UTR-3CDS	ENST00000596164	ENST00000565886		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
3UTR-3UTR	ENST00000596164	ENST00000564348		TCGA	LD	STAD	TCGA-BR-8289-01A	TECR	chr19	14640523	+	TGFBR3L	chr19	7982942	+
intron-3CDS	ENST00000360605	ENST00000323670		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000360605	ENST00000392276		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000360605	ENST00000592153		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000360605	ENST00000392275		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000360605	ENST00000392278		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
In-frame	ENST00000542441	ENST00000323670		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000542441	ENST00000392276		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000542441	ENST00000592153		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000542441	ENST00000392275		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000542441	ENST00000392278		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5UTR-3CDS	ENST00000392271	ENST00000323670		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5UTR-5UTR	ENST00000392271	ENST00000392276		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5UTR-5UTR	ENST00000392271	ENST00000592153		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5UTR-5UTR	ENST00000392271	ENST00000392275		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5UTR-5UTR	ENST00000392271	ENST00000392278		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
Frame-shit	ENST00000312051	ENST00000323670		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000312051	ENST00000392276		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000312051	ENST00000592153		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000312051	ENST00000392275		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5CDS-5UTR	ENST00000312051	ENST00000392278		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-3CDS	ENST00000574176	ENST00000323670		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000574176	ENST00000392276		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000574176	ENST00000592153		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000574176	ENST00000392275		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
intron-5UTR	ENST00000574176	ENST00000392278		TCGA	LD	STAD	TCGA-BR-8289-01A	URI1	chr19	30433571	+	C19orf12	chr19	30193884	-
5UTR-3CDS	ENST00000355078	ENST00000360835		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
5UTR-intron	ENST00000355078	ENST00000290460		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
5UTR-intron	ENST00000355078	ENST00000470433		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
5UTR-3CDS	ENST00000302763	ENST00000360835		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
5UTR-intron	ENST00000302763	ENST00000290460		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
5UTR-intron	ENST00000302763	ENST00000470433		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-3CDS	ENST00000518825	ENST00000360835		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-intron	ENST00000518825	ENST00000290460		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-intron	ENST00000518825	ENST00000470433		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-3CDS	ENST00000520400	ENST00000360835		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-intron	ENST00000520400	ENST00000290460		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-intron	ENST00000520400	ENST00000470433		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-3CDS	ENST00000540387	ENST00000360835		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-intron	ENST00000540387	ENST00000290460		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
intron-intron	ENST00000540387	ENST00000470433		TCGA	LD	STAD	TCGA-BR-8295-01A	CTNNA1	chr5	138089199	+	SCUBE1	chr22	43617295	-
5UTR-3CDS	ENST00000377022	ENST00000361445		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
5UTR-5UTR	ENST00000377022	ENST00000376838		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
5UTR-intron	ENST00000377022	ENST00000495435		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
5UTR-3CDS	ENST00000344008	ENST00000361445		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
5UTR-5UTR	ENST00000344008	ENST00000376838		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
5UTR-intron	ENST00000344008	ENST00000495435		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
intron-3CDS	ENST00000478728	ENST00000361445		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
intron-5UTR	ENST00000478728	ENST00000376838		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
intron-intron	ENST00000478728	ENST00000495435		TCGA	LD	STAD	TCGA-BR-8297-01A	CASZ1	chr1	10856621	-	MTOR	chr1	11190834	-
In-frame	ENST00000262809	ENST00000339007		TCGA	LD	STAD	TCGA-BR-8297-01A	ELL	chr19	18632731	-	LRRC25	chr19	18502935	-
In-frame	ENST00000262809	ENST00000595840		TCGA	LD	STAD	TCGA-BR-8297-01A	ELL	chr19	18632731	-	LRRC25	chr19	18502935	-
intron-3CDS	ENST00000596124	ENST00000339007		TCGA	LD	STAD	TCGA-BR-8297-01A	ELL	chr19	18632731	-	LRRC25	chr19	18502935	-
intron-3CDS	ENST00000596124	ENST00000595840		TCGA	LD	STAD	TCGA-BR-8297-01A	ELL	chr19	18632731	-	LRRC25	chr19	18502935	-
In-frame	ENST00000313654	ENST00000313468		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
5CDS-intron	ENST00000313654	ENST00000528492		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
5CDS-intron	ENST00000313654	ENST00000526542		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
In-frame	ENST00000399516	ENST00000313468		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
5CDS-intron	ENST00000399516	ENST00000528492		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
5CDS-intron	ENST00000399516	ENST00000526542		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-3CDS	ENST00000269217	ENST00000313468		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-intron	ENST00000269217	ENST00000528492		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-intron	ENST00000269217	ENST00000526542		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-3CDS	ENST00000587184	ENST00000313468		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-intron	ENST00000587184	ENST00000528492		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-intron	ENST00000587184	ENST00000526542		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-3CDS	ENST00000588770	ENST00000313468		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-intron	ENST00000588770	ENST00000528492		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
intron-intron	ENST00000588770	ENST00000526542		TCGA	LD	STAD	TCGA-BR-8297-01A	LAMA3	chr18	21364121	+	NDUFS8	chr11	67800390	+
Frame-shit	ENST00000221455	ENST00000421905		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
Frame-shit	ENST00000221455	ENST00000221462		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
5CDS-intron	ENST00000221455	ENST00000496125		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
Frame-shit	ENST00000391953	ENST00000421905		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
Frame-shit	ENST00000391953	ENST00000221462		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
5CDS-intron	ENST00000391953	ENST00000496125		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
Frame-shit	ENST00000544944	ENST00000421905		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
Frame-shit	ENST00000544944	ENST00000221462		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
5CDS-intron	ENST00000544944	ENST00000496125		TCGA	LD	STAD	TCGA-BR-8361-01A	CLASRP	chr19	45543569	+	PPP1R37	chr19	45648465	+
intron-3CDS	ENST00000392723	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
intron-3CDS	ENST00000392723	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
intron-3CDS	ENST00000392723	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
intron-3CDS	ENST00000392723	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
intron-3CDS	ENST00000392723	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
intron-3CDS	ENST00000392723	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000361398	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000361398	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000361398	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000361398	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000361398	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000361398	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000271715	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000271715	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000271715	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000271715	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000271715	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000271715	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000368863	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000368863	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000368863	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000368863	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000368863	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000368863	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000409503	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000409503	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000409503	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000409503	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000409503	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000409503	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000531094	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000531094	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000531094	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000531094	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000531094	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000531094	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000540984	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000540984	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000540984	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000540984	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000540984	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000540984	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000491586	ENST00000368874		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000491586	ENST00000271657		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000491586	ENST00000368875		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000491586	ENST00000368873		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000491586	ENST00000529142		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
5UTR-3CDS	ENST00000491586	ENST00000368872		TCGA	LD	STAD	TCGA-BR-8361-01A	POGZ	chr1	151431628	-	PI4KB	chr1	151267017	-
Frame-shit	ENST00000345988	ENST00000294016		TCGA	LD	STAD	TCGA-BR-8361-01A	PPL	chr16	4986985	-	ADCY9	chr16	4057559	-
5CDS-5UTR	ENST00000345988	ENST00000571889		TCGA	LD	STAD	TCGA-BR-8361-01A	PPL	chr16	4986985	-	ADCY9	chr16	4057559	-
Frame-shit	ENST00000590782	ENST00000294016		TCGA	LD	STAD	TCGA-BR-8361-01A	PPL	chr16	4986985	-	ADCY9	chr16	4057559	-
5CDS-5UTR	ENST00000590782	ENST00000571889		TCGA	LD	STAD	TCGA-BR-8361-01A	PPL	chr16	4986985	-	ADCY9	chr16	4057559	-
In-frame	ENST00000537330	ENST00000343674		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000537330	ENST00000532868		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000528615		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000395574		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000543978		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000527911		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000456247		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000421244		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000318201		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000537330	ENST00000454345		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-3UTR	ENST00000537330	ENST00000525434		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000570891	ENST00000343674		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000570891	ENST00000532868		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000528615		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000395574		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000543978		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000527911		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000456247		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000421244		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000318201		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000570891	ENST00000454345		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-3UTR	ENST00000570891	ENST00000525434		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000306801	ENST00000343674		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000306801	ENST00000532868		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000528615		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000395574		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000543978		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000527911		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000456247		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000421244		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000318201		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000306801	ENST00000454345		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-3UTR	ENST00000306801	ENST00000525434		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000544334	ENST00000343674		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
In-frame	ENST00000544334	ENST00000532868		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000528615		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000395574		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000543978		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000527911		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000456247		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000421244		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000318201		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-intron	ENST00000544334	ENST00000454345		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-3UTR	ENST00000544334	ENST00000525434		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-3CDS	ENST00000575542	ENST00000343674		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-3CDS	ENST00000575542	ENST00000532868		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000528615		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000395574		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000543978		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000527911		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000456247		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000421244		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000318201		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-intron	ENST00000575542	ENST00000454345		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
3UTR-3UTR	ENST00000575542	ENST00000525434		TCGA	LD	STAD	TCGA-BR-8361-01A	RPTOR	chr17	78727985	+	DGKZ	chr11	46388841	+
5CDS-3UTR	ENST00000367975	ENST00000490724		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000367975	ENST00000392192		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000367975	ENST00000368011		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000342751	ENST00000490724		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000342751	ENST00000392192		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000342751	ENST00000368011		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000432287	ENST00000490724		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000432287	ENST00000392192		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000432287	ENST00000368011		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000392169	ENST00000490724		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000392169	ENST00000392192		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000392169	ENST00000368011		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000513009	ENST00000490724		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000513009	ENST00000392192		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000513009	ENST00000368011		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
3UTR-3UTR	ENST00000470743	ENST00000490724		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
3UTR-3UTR	ENST00000470743	ENST00000392192		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
3UTR-3UTR	ENST00000470743	ENST00000368011		TCGA	LD	STAD	TCGA-BR-8361-01A	SDHC	chr1	161326630	+	KLHDC9	chr1	161069851	+
intron-3CDS	ENST00000570010	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000563356	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000568079	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000464850	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000332307	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
intron-3CDS	ENST00000393430	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
5UTR-3CDS	ENST00000567481	ENST00000390239		TCGA	LD	STAD	TCGA-BR-8363-01A	ZFP1	chr16	75183096	+	IGKJ4	chr2	89160433	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-BR-8367-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-BR-8367-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-BR-8367-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-BR-8367-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-BR-8367-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-BR-8367-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000285238	ENST00000335464		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000285238	ENST00000417024		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000285238	ENST00000582773		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000285238	ENST00000582330		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
5CDS-intron	ENST00000285238	ENST00000584171		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000515707	ENST00000335464		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000515707	ENST00000417024		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000515707	ENST00000582773		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000515707	ENST00000582330		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
5CDS-intron	ENST00000515707	ENST00000584171		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000427699	ENST00000335464		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000427699	ENST00000417024		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000427699	ENST00000582773		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000427699	ENST00000582330		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
5CDS-intron	ENST00000427699	ENST00000584171		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
intron-3CDS	ENST00000510891	ENST00000335464		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
intron-3CDS	ENST00000510891	ENST00000417024		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
intron-3CDS	ENST00000510891	ENST00000582773		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
intron-3CDS	ENST00000510891	ENST00000582330		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
intron-intron	ENST00000510891	ENST00000584171		TCGA	LD	STAD	TCGA-BR-8373-01A	ABCC3	chr17	48712342	+	TMEM104	chr17	72815889	+
In-frame	ENST00000257963	ENST00000301190		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000257963	ENST00000538991		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000257963	ENST00000340970		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-3UTR	ENST00000257963	ENST00000547119		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
In-frame	ENST00000541224	ENST00000301190		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000541224	ENST00000538991		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000541224	ENST00000340970		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-3UTR	ENST00000541224	ENST00000547119		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
In-frame	ENST00000426655	ENST00000301190		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000426655	ENST00000538991		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000426655	ENST00000340970		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-3UTR	ENST00000426655	ENST00000547119		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
In-frame	ENST00000415850	ENST00000301190		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000415850	ENST00000538991		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000415850	ENST00000340970		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-3UTR	ENST00000415850	ENST00000547119		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
In-frame	ENST00000542485	ENST00000301190		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000542485	ENST00000538991		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-5UTR	ENST00000542485	ENST00000340970		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
5CDS-3UTR	ENST00000542485	ENST00000547119		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
intron-3CDS	ENST00000563121	ENST00000301190		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
intron-5UTR	ENST00000563121	ENST00000538991		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
intron-5UTR	ENST00000563121	ENST00000340970		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
intron-3UTR	ENST00000563121	ENST00000547119		TCGA	LD	STAD	TCGA-BR-8373-01A	ACVR1B	chr12	52374983	+	ANKRD33	chr12	52282352	+
In-frame	ENST00000382549	ENST00000382751		TCGA	LD	STAD	TCGA-BR-8373-01A	C21orf59	chr21	33979959	-	URB1	chr21	33750850	-
5CDS-intron	ENST00000382549	ENST00000492603		TCGA	LD	STAD	TCGA-BR-8373-01A	C21orf59	chr21	33979959	-	URB1	chr21	33750850	-
In-frame	ENST00000290155	ENST00000382751		TCGA	LD	STAD	TCGA-BR-8373-01A	C21orf59	chr21	33979959	-	URB1	chr21	33750850	-
5CDS-intron	ENST00000290155	ENST00000492603		TCGA	LD	STAD	TCGA-BR-8373-01A	C21orf59	chr21	33979959	-	URB1	chr21	33750850	-
In-frame	ENST00000540881	ENST00000382751		TCGA	LD	STAD	TCGA-BR-8373-01A	C21orf59	chr21	33979959	-	URB1	chr21	33750850	-
5CDS-intron	ENST00000540881	ENST00000492603		TCGA	LD	STAD	TCGA-BR-8373-01A	C21orf59	chr21	33979959	-	URB1	chr21	33750850	-
Frame-shit	ENST00000334983	ENST00000282541		TCGA	LD	STAD	TCGA-BR-8373-01A	CMTM7	chr3	32433557	+	GPD1L	chr3	32169568	+
Frame-shit	ENST00000349718	ENST00000282541		TCGA	LD	STAD	TCGA-BR-8373-01A	CMTM7	chr3	32433557	+	GPD1L	chr3	32169568	+
intron-intron	ENST00000545187	ENST00000337018		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000545187	ENST00000452918		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000545187	ENST00000601879		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000545187	ENST00000600377		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000545187	ENST00000456085		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000545187	ENST00000598202		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000338128	ENST00000337018		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000338128	ENST00000452918		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000338128	ENST00000601879		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000338128	ENST00000600377		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000338128	ENST00000456085		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000338128	ENST00000598202		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000457269	ENST00000337018		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000457269	ENST00000452918		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000457269	ENST00000601879		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000457269	ENST00000600377		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000457269	ENST00000456085		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000457269	ENST00000598202		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000578963	ENST00000337018		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000578963	ENST00000452918		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000578963	ENST00000601879		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000578963	ENST00000600377		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000578963	ENST00000456085		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000578963	ENST00000598202		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000317018	ENST00000337018		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000317018	ENST00000452918		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000317018	ENST00000601879		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000317018	ENST00000600377		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000317018	ENST00000456085		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-intron	ENST00000317018	ENST00000598202		TCGA	LD	STAD	TCGA-BR-8373-01A	ISYNA1	chr19	18545346	-	SUGP2	chr19	19102461	-
intron-3CDS	ENST00000408388	ENST00000369046		TCGA	LD	STAD	TCGA-BR-8373-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
intron-intron	ENST00000408388	ENST00000467262		TCGA	LD	STAD	TCGA-BR-8373-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
intron-intron	ENST00000408388	ENST00000369044		TCGA	LD	STAD	TCGA-BR-8373-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
5CDS-intron	ENST00000285850	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5CDS-intron	ENST00000555702	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5CDS-intron	ENST00000397532	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5CDS-intron	ENST00000397529	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5CDS-intron	ENST00000397528	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5UTR-intron	ENST00000554061	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5UTR-intron	ENST00000554517	ENST00000568335		TCGA	LD	STAD	TCGA-BR-8373-01A	SLC7A7	chr14	23248002	-	TMEM114	chr16	8587828	-
5CDS-intron	ENST00000450454	ENST00000374490		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000450454	ENST00000436439		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-5UTR	ENST00000450454	ENST00000374483		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000450454	ENST00000509389		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000374601	ENST00000374490		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000374601	ENST00000436439		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-5UTR	ENST00000374601	ENST00000374483		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000374601	ENST00000509389		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000461794	ENST00000374490		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000461794	ENST00000436439		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-5UTR	ENST00000461794	ENST00000374483		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
5CDS-intron	ENST00000461794	ENST00000509389		TCGA	LD	STAD	TCGA-BR-8373-01A	TCEA3	chr1	23743742	-	HMGCL	chr1	24152673	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-BR-8384-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-BR-8384-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-BR-8384-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-BR-8384-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-BR-8384-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-BR-8384-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000339438	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000339438	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000339438	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000339438	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000438362	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000438362	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000438362	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000358528	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000358528	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000358528	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000261443	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000261443	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000261443	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000530886	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000530886	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000530886	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
Frame-shit	ENST00000369530	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000369530	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000369530	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-3CDS	ENST00000483407	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-5UTR	ENST00000483407	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
intron-5UTR	ENST00000483407	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000360743		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000358039		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000544629		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000369669		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000490067		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000369668		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000369666		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000343210		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
In-frame	ENST00000534699	ENST00000538187		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000534699	ENST00000463235		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000534699	ENST00000543570		TCGA	LD	STAD	TCGA-BR-8483-01A	CSDE1	chr1	115279379	-	ST7L	chr1	113121039	-
5CDS-5UTR	ENST00000321562	ENST00000584601		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000406381		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000541774		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000445658		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000540147		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000584450		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000269571		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000578199		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000540042		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
5CDS-intron	ENST00000321562	ENST00000584888		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-5UTR	ENST00000544340	ENST00000584601		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000406381		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000541774		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000445658		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000540147		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000584450		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000269571		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000578199		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000540042		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
intron-intron	ENST00000544340	ENST00000584888		TCGA	LD	STAD	TCGA-BR-8483-01A	FKBP10	chr17	39969531	+	ERBB2	chr17	37855790	+
Frame-shit	ENST00000394395	ENST00000269534		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
Frame-shit	ENST00000394395	ENST00000521789		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
Frame-shit	ENST00000394395	ENST00000435506		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-3CDS	ENST00000586023	ENST00000269534		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-3CDS	ENST00000586023	ENST00000521789		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-3CDS	ENST00000586023	ENST00000435506		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
Frame-shit	ENST00000225396	ENST00000269534		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
Frame-shit	ENST00000225396	ENST00000521789		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
Frame-shit	ENST00000225396	ENST00000435506		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-3CDS	ENST00000417170	ENST00000269534		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-3CDS	ENST00000417170	ENST00000521789		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-3CDS	ENST00000417170	ENST00000435506		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
3UTR-3CDS	ENST00000591992	ENST00000269534		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
3UTR-3CDS	ENST00000591992	ENST00000521789		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
3UTR-3CDS	ENST00000591992	ENST00000435506		TCGA	LD	STAD	TCGA-BR-8483-01A	TADA2A	chr17	35830636	+	NT5C3B	chr17	39988729	-
intron-intron	ENST00000355272	ENST00000292577		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000355272	ENST00000250974		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000355272	ENST00000590661		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000356926	ENST00000292577		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000356926	ENST00000250974		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000356926	ENST00000590661		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000350812	ENST00000292577		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000350812	ENST00000250974		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000350812	ENST00000590661		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000345016	ENST00000292577		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000345016	ENST00000250974		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000345016	ENST00000590661		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000590683	ENST00000292577		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000590683	ENST00000250974		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
intron-intron	ENST00000590683	ENST00000590661		TCGA	LD	STAD	TCGA-BR-8485-01A	AP3D1	chr19	2115232	-	ABHD17A	chr19	1881913	-
5CDS-5UTR	ENST00000389301	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-5UTR	ENST00000389301	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-intron	ENST00000389301	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-intron	ENST00000389301	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-5UTR	ENST00000568369	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-5UTR	ENST00000568369	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-intron	ENST00000568369	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
5CDS-intron	ENST00000568369	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000567284	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000567284	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000567284	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000567284	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000389302	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000389302	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000389302	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000389302	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000563673	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000563673	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000563673	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000563673	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000534992	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000534992	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000534992	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000534992	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000543736	ENST00000378330		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-5UTR	ENST00000543736	ENST00000301030		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000543736	ENST00000563291		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
intron-intron	ENST00000543736	ENST00000567736		TCGA	LD	STAD	TCGA-BR-8485-01A	FANCA	chr16	89812992	-	ANKRD11	chr16	89484776	-
Frame-shit	ENST00000490882	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000490882	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000490882	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000490882	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
5CDS-5UTR	ENST00000490882	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000429972	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000429972	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000429972	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000429972	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
5CDS-5UTR	ENST00000429972	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000295956	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000295956	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000295956	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000295956	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
5CDS-5UTR	ENST00000295956	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000358537	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000358537	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000358537	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000358537	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
5CDS-5UTR	ENST00000358537	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000357272	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000357272	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000357272	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000357272	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
5CDS-5UTR	ENST00000357272	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000348383	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000348383	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000348383	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
Frame-shit	ENST00000348383	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
5CDS-5UTR	ENST00000348383	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000493452	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000493452	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000493452	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000493452	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-5UTR	ENST00000493452	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000419752	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000419752	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000419752	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000419752	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-5UTR	ENST00000419752	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000484981	ENST00000437809		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000484981	ENST00000368331		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000484981	ENST00000271883		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-3CDS	ENST00000484981	ENST00000361040		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
intron-5UTR	ENST00000484981	ENST00000471341		TCGA	LD	STAD	TCGA-BR-8485-01A	FLNB	chr3	57994583	+	GON4L	chr1	155737332	-
In-frame	ENST00000390548	ENST00000375820		TCGA	LD	STAD	TCGA-BR-8485-01A	IGHG1	chr14	106208678	-	COL4A1	chr13	110850978	-
In-frame	ENST00000390548	ENST00000543140		TCGA	LD	STAD	TCGA-BR-8485-01A	IGHG1	chr14	106208678	-	COL4A1	chr13	110850978	-
5CDS-intron	ENST00000390548	ENST00000467182		TCGA	LD	STAD	TCGA-BR-8485-01A	IGHG1	chr14	106208678	-	COL4A1	chr13	110850978	-
intron-5UTR	ENST00000420083	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000420083	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000449870	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000449870	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000318511	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000318511	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000407004	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000407004	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000589998	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000589998	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000250241	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000250241	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000592763	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000592763	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000588657	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000588657	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000590261	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000590261	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000586544	ENST00000592854		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
intron-5UTR	ENST00000586544	ENST00000397820		TCGA	LD	STAD	TCGA-BR-8485-01A	ILF3	chr19	10765799	+	C19orf38	chr19	10959117	+
Frame-shit	ENST00000374580	ENST00000409718		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
Frame-shit	ENST00000374580	ENST00000358677		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
Frame-shit	ENST00000374580	ENST00000409988		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374580	ENST00000409385		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374580	ENST00000451764		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374580	ENST00000360760		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374580	ENST00000409140		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374580	ENST00000409755		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374580	ENST00000409151		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-intron	ENST00000374580	ENST00000460095		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
Frame-shit	ENST00000374574	ENST00000409718		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
Frame-shit	ENST00000374574	ENST00000358677		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
Frame-shit	ENST00000374574	ENST00000409988		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374574	ENST00000409385		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374574	ENST00000451764		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374574	ENST00000360760		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374574	ENST00000409140		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374574	ENST00000409755		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-5UTR	ENST00000374574	ENST00000409151		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-intron	ENST00000374574	ENST00000460095		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-3CDS	ENST00000479069	ENST00000409718		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-3CDS	ENST00000479069	ENST00000358677		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-3CDS	ENST00000479069	ENST00000409988		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-5UTR	ENST00000479069	ENST00000409385		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-5UTR	ENST00000479069	ENST00000451764		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-5UTR	ENST00000479069	ENST00000360760		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-5UTR	ENST00000479069	ENST00000409140		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-5UTR	ENST00000479069	ENST00000409755		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-5UTR	ENST00000479069	ENST00000409151		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
3UTR-intron	ENST00000479069	ENST00000460095		TCGA	LD	STAD	TCGA-BR-8590-01A	BMPR2	chr2	203332412	+	SPATS2L	chr2	201277034	+
5CDS-intron	ENST00000430627	ENST00000346872		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000394189		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000439167		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000535189		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000377944		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000377945		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000377952		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000377958		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000346243		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000350532		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000351680		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000467757		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000439016		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000430627	ENST00000583368		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000346872		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000394189		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000439167		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000535189		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000377944		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000377945		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000377952		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000377958		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000346243		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000350532		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000351680		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000467757		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000439016		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5CDS-intron	ENST00000447079	ENST00000583368		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000346872		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000394189		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000439167		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000535189		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000377944		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000377945		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000377952		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000377958		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000346243		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000350532		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000351680		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000467757		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000439016		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
intron-intron	ENST00000559545	ENST00000583368		TCGA	LD	STAD	TCGA-BR-8590-01A	CDK12	chr17	37673809	+	IKZF3	chr17	37914218	-
5UTR-3CDS	ENST00000523149	ENST00000300952		TCGA	LD	STAD	TCGA-BR-8590-01A	EXTL3	chr8	28480327	+	MIDN	chr19	1251561	+
5UTR-3CDS	ENST00000523149	ENST00000591446		TCGA	LD	STAD	TCGA-BR-8590-01A	EXTL3	chr8	28480327	+	MIDN	chr19	1251561	+
intron-3CDS	ENST00000220562	ENST00000300952		TCGA	LD	STAD	TCGA-BR-8590-01A	EXTL3	chr8	28480327	+	MIDN	chr19	1251561	+
intron-3CDS	ENST00000220562	ENST00000591446		TCGA	LD	STAD	TCGA-BR-8590-01A	EXTL3	chr8	28480327	+	MIDN	chr19	1251561	+
intron-3CDS	ENST00000519886	ENST00000300952		TCGA	LD	STAD	TCGA-BR-8590-01A	EXTL3	chr8	28480327	+	MIDN	chr19	1251561	+
intron-3CDS	ENST00000519886	ENST00000591446		TCGA	LD	STAD	TCGA-BR-8590-01A	EXTL3	chr8	28480327	+	MIDN	chr19	1251561	+
intron-3CDS	ENST00000405402	ENST00000566620		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-3CDS	ENST00000405402	ENST00000268613		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000405402	ENST00000565636		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000405402	ENST00000431540		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000405402	ENST00000428848		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000405402	ENST00000567445		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000405402	ENST00000446376		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-3UTR	ENST00000405402	ENST00000569454		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
In-frame	ENST00000253458	ENST00000566620		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
In-frame	ENST00000253458	ENST00000268613		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000253458	ENST00000565636		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000253458	ENST00000431540		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000253458	ENST00000428848		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000253458	ENST00000567445		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000253458	ENST00000446376		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-3UTR	ENST00000253458	ENST00000569454		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
In-frame	ENST00000393243	ENST00000566620		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
In-frame	ENST00000393243	ENST00000268613		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000393243	ENST00000565636		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000393243	ENST00000431540		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000393243	ENST00000428848		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000393243	ENST00000567445		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-intron	ENST00000393243	ENST00000446376		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-3UTR	ENST00000393243	ENST00000569454		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-3CDS	ENST00000471070	ENST00000566620		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-3CDS	ENST00000471070	ENST00000268613		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000471070	ENST00000565636		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000471070	ENST00000431540		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000471070	ENST00000428848		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000471070	ENST00000567445		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-intron	ENST00000471070	ENST00000446376		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
intron-3UTR	ENST00000471070	ENST00000569454		TCGA	LD	STAD	TCGA-BR-8590-01A	GSE1	chr16	85647004	+	CDH13	chr16	83520082	+
5CDS-5UTR	ENST00000454682	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000454682	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000454682	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000454682	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000454682	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000454682	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000454682	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000550952	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000550952	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000550952	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000550952	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000550952	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000550952	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000550952	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000356769	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000356769	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000356769	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000356769	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000356769	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000356769	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000356769	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000552540	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000552540	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000552540	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000552540	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000552540	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000552540	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000552540	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000393891	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000393891	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000393891	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000393891	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000393891	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000393891	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000393891	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000548563	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000548563	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000548563	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000548563	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-intron	ENST00000548563	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-intron	ENST00000548563	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-intron	ENST00000548563	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000546392	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000546392	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000546392	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-5UTR	ENST00000546392	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000546392	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000546392	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5CDS-intron	ENST00000546392	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000551793	ENST00000413953		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000551793	ENST00000347140		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000551793	ENST00000358907		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-5UTR	ENST00000551793	ENST00000402412		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-intron	ENST00000551793	ENST00000441731		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-intron	ENST00000551793	ENST00000403821		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
5UTR-intron	ENST00000551793	ENST00000546843		TCGA	LD	STAD	TCGA-BR-8590-01A	NACA	chr12	57118236	-	R3HDM2	chr12	57689290	-
In-frame	ENST00000367142	ENST00000331830		TCGA	LD	STAD	TCGA-BR-8590-01A	NUCKS1	chr1	205719085	-	CNTN2	chr1	205041075	+
intron-3CDS	ENST00000464938	ENST00000331830		TCGA	LD	STAD	TCGA-BR-8590-01A	NUCKS1	chr1	205719085	-	CNTN2	chr1	205041075	+
Frame-shit	ENST00000359282	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359282	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359282	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359282	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359282	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000359282	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000603815	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000603815	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000603815	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000603815	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000603815	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000603815	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000437231	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000437231	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000437231	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000437231	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000437231	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000437231	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000447282	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000447282	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000447282	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000447282	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000447282	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000447282	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000549863	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000549863	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000549863	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000549863	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000549863	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000549863	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359462	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359462	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359462	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359462	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000359462	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000359462	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000546463	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000546463	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000546463	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000546463	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000546463	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000546463	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552296	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552296	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552296	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552296	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552296	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000552296	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552819	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552819	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552819	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552819	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000552819	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000552819	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000455667	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000455667	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000455667	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000455667	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000455667	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000455667	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000439930	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000439930	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000439930	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000439930	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000439930	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000439930	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000548933	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000548933	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000548933	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000548933	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000548933	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000548933	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000541275	ENST00000264657		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000541275	ENST00000585517		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000541275	ENST00000389272		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000541275	ENST00000588969		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
Frame-shit	ENST00000541275	ENST00000404395		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-intron	ENST00000541275	ENST00000590776		TCGA	LD	STAD	TCGA-BR-8590-01A	PCBP2	chr12	53849785	+	STAT3	chr17	40483549	-
5CDS-5UTR	ENST00000295797	ENST00000355897		TCGA	LD	STAD	TCGA-BR-8590-01A	PRKCI	chr3	169985788	+	GPR160	chr3	169797562	+
5CDS-intron	ENST00000295797	ENST00000482813		TCGA	LD	STAD	TCGA-BR-8590-01A	PRKCI	chr3	169985788	+	GPR160	chr3	169797562	+
3UTR-intron	ENST00000579301	ENST00000534836		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
3UTR-intron	ENST00000579301	ENST00000541045		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
3UTR-intron	ENST00000579301	ENST00000536908		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
3UTR-intron	ENST00000579301	ENST00000378738		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
3UTR-intron	ENST00000579301	ENST00000394832		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
3UTR-intron	ENST00000579301	ENST00000320856		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
3UTR-intron	ENST00000579301	ENST00000394835		TCGA	LD	STAD	TCGA-BR-8590-01A	SMURF2P1	chr17	28937960	+	EFCAB5	chr17	28434852	+
Frame-shit	ENST00000263620	ENST00000569393		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
Frame-shit	ENST00000263620	ENST00000334122		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
5CDS-5UTR	ENST00000263620	ENST00000415500		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
5CDS-5UTR	ENST00000263620	ENST00000564373		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
intron-3CDS	ENST00000592216	ENST00000569393		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
intron-3CDS	ENST00000592216	ENST00000334122		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
intron-5UTR	ENST00000592216	ENST00000415500		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
intron-5UTR	ENST00000592216	ENST00000564373		TCGA	LD	STAD	TCGA-BR-8677-01A	ARID3A	chr19	960164	+	TEX38	chr1	47138696	+
5UTR-3CDS	ENST00000381980	ENST00000508802		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-3CDS	ENST00000381980	ENST00000261439		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-intron	ENST00000381980	ENST00000402522		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-intron	ENST00000381980	ENST00000407365		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-3CDS	ENST00000508175	ENST00000508802		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-3CDS	ENST00000508175	ENST00000261439		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-intron	ENST00000508175	ENST00000402522		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-intron	ENST00000508175	ENST00000407365		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
intron-3CDS	ENST00000284437	ENST00000508802		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
intron-3CDS	ENST00000284437	ENST00000261439		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
intron-intron	ENST00000284437	ENST00000402522		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
intron-intron	ENST00000284437	ENST00000407365		TCGA	LD	STAD	TCGA-BR-8677-01A	C4orf19	chr4	37559698	+	TBC1D1	chr4	38037209	+
5UTR-intron	ENST00000560371	ENST00000329967		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000560371	ENST00000347067		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000347662	ENST00000329967		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000347662	ENST00000347067		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000392745	ENST00000329967		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000392745	ENST00000347067		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000539721	ENST00000329967		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
5UTR-intron	ENST00000539721	ENST00000347067		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
intron-intron	ENST00000351691	ENST00000329967		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
intron-intron	ENST00000351691	ENST00000347067		TCGA	LD	STAD	TCGA-BR-8677-01A	TRAF3	chr14	103244012	+	SIVA1	chr14	105233127	+
Frame-shit	ENST00000371579	ENST00000342129		TCGA	LD	STAD	TCGA-BR-8678-01A	DPP7	chr9	140008317	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000371579	ENST00000340951		TCGA	LD	STAD	TCGA-BR-8678-01A	DPP7	chr9	140008317	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000371579	ENST00000479452		TCGA	LD	STAD	TCGA-BR-8678-01A	DPP7	chr9	140008317	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000371579	ENST00000475006		TCGA	LD	STAD	TCGA-BR-8678-01A	DPP7	chr9	140008317	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000371579	ENST00000465160		TCGA	LD	STAD	TCGA-BR-8678-01A	DPP7	chr9	140008317	-	EXD3	chr9	140218595	-
In-frame	ENST00000263733	ENST00000367635		TCGA	LD	STAD	TCGA-BR-8678-01A	FAM20B	chr1	179023773	+	RALGPS2	chr1	178846633	+
In-frame	ENST00000263733	ENST00000367634		TCGA	LD	STAD	TCGA-BR-8678-01A	FAM20B	chr1	179023773	+	RALGPS2	chr1	178846633	+
5CDS-intron	ENST00000263733	ENST00000477383		TCGA	LD	STAD	TCGA-BR-8678-01A	FAM20B	chr1	179023773	+	RALGPS2	chr1	178846633	+
5UTR-3CDS	ENST00000437398	ENST00000344921		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000437398	ENST00000263121		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000437398	ENST00000407422		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000437398	ENST00000407082		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-intron	ENST00000437398	ENST00000477836		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000314328	ENST00000344921		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000314328	ENST00000263121		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000314328	ENST00000407422		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000314328	ENST00000407082		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-intron	ENST00000314328	ENST00000477836		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000541492	ENST00000344921		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000541492	ENST00000263121		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000541492	ENST00000407422		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-3CDS	ENST00000541492	ENST00000407082		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5UTR-intron	ENST00000541492	ENST00000477836		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
3UTR-3CDS	ENST00000416735	ENST00000344921		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
3UTR-3CDS	ENST00000416735	ENST00000263121		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
3UTR-3CDS	ENST00000416735	ENST00000407422		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
3UTR-3CDS	ENST00000416735	ENST00000407082		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
3UTR-intron	ENST00000416735	ENST00000477836		TCGA	LD	STAD	TCGA-BR-8678-01A	SPECC1L	chr22	24666951	+	SMARCB1	chr22	24133943	+
5CDS-intron	ENST00000452392	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000452392	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374899	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000374897	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000485701	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000439425	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000455842	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490587	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000414145	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000443713	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000463174	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000451907	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452371	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000468636	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000445986	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000419142	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000460458	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383240	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383239	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000469427	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383119	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383118	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000474736	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000426977	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000457634	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000266000		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000374542		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000414083		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000477162		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000455860		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000436311		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000472399		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000399060		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000383062		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000461796		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000433482		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000445009		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000469277		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000399344		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000383194		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000494562		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
intron-intron	ENST00000490573	ENST00000414388		TCGA	LD	STAD	TCGA-BR-8678-01A	TAP2	chr6	32800110	-	DAXX	chr6	33291807	-
5CDS-5UTR	ENST00000360605	ENST00000436066		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000360605	ENST00000592810		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000542441	ENST00000436066		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000542441	ENST00000592810		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000392271	ENST00000436066		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000392271	ENST00000592810		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000312051	ENST00000436066		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000312051	ENST00000592810		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000574176	ENST00000436066		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000574176	ENST00000592810		TCGA	LD	STAD	TCGA-BR-8678-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000264645	ENST00000301665		TCGA	LD	STAD	TCGA-BR-A44U-01A	CASC3	chr17	38297860	+	TMEM99	chr17	38989367	+
5CDS-intron	ENST00000264645	ENST00000496847		TCGA	LD	STAD	TCGA-BR-A44U-01A	CASC3	chr17	38297860	+	TMEM99	chr17	38989367	+
3UTR-5UTR	ENST00000494757	ENST00000304046		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
3UTR-5UTR	ENST00000494757	ENST00000579695		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
3UTR-5UTR	ENST00000494757	ENST00000394169		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
3UTR-intron	ENST00000494757	ENST00000584220		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
3UTR-intron	ENST00000494757	ENST00000582052		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000323571	ENST00000304046		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000323571	ENST00000579695		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000323571	ENST00000394169		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000323571	ENST00000584220		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000323571	ENST00000582052		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000585043	ENST00000304046		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000585043	ENST00000579695		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000585043	ENST00000394169		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000585043	ENST00000584220		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000585043	ENST00000582052		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000394103	ENST00000304046		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000394103	ENST00000579695		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000394103	ENST00000394169		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000394103	ENST00000584220		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000394103	ENST00000582052		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000536600	ENST00000304046		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000536600	ENST00000579695		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-5UTR	ENST00000536600	ENST00000394169		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000536600	ENST00000584220		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5UTR-intron	ENST00000536600	ENST00000582052		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
intron-5UTR	ENST00000583130	ENST00000304046		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
intron-5UTR	ENST00000583130	ENST00000579695		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
intron-5UTR	ENST00000583130	ENST00000394169		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
intron-intron	ENST00000583130	ENST00000584220		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
intron-intron	ENST00000583130	ENST00000582052		TCGA	LD	STAD	TCGA-BR-A44U-01A	WIPF2	chr17	38375744	+	ORMDL3	chr17	38080473	-
5CDS-5UTR	ENST00000487273	ENST00000519476		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000487273	ENST00000297720		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000487273	ENST00000524874		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000487273	ENST00000379957		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000487273	ENST00000523983		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000487273	ENST00000527710		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000487273	ENST00000528827		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000466936	ENST00000519476		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000466936	ENST00000297720		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000466936	ENST00000524874		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000466936	ENST00000379957		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000466936	ENST00000523983		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000466936	ENST00000527710		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000466936	ENST00000528827		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000481513	ENST00000519476		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000481513	ENST00000297720		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000481513	ENST00000524874		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000481513	ENST00000379957		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-5UTR	ENST00000481513	ENST00000523983		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000481513	ENST00000527710		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
5CDS-intron	ENST00000481513	ENST00000528827		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000484143	ENST00000519476		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000484143	ENST00000297720		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000484143	ENST00000524874		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000484143	ENST00000379957		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-5UTR	ENST00000484143	ENST00000523983		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-intron	ENST00000484143	ENST00000527710		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-intron	ENST00000484143	ENST00000528827		TCGA	LD	STAD	TCGA-BR-A452-01A	ADAM9	chr8	38854679	+	LETM2	chr8	38245468	+
intron-3CDS	ENST00000317063	ENST00000315082		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3UTR	ENST00000317063	ENST00000569943		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3CDS	ENST00000262315	ENST00000315082		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3UTR	ENST00000262315	ENST00000569943		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3CDS	ENST00000455171	ENST00000315082		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3UTR	ENST00000455171	ENST00000569943		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3CDS	ENST00000491530	ENST00000315082		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
intron-3UTR	ENST00000491530	ENST00000569943		TCGA	LD	STAD	TCGA-BR-A452-01A	CHTF18	chr16	841967	+	RHOT2	chr16	718670	+
In-frame	ENST00000550735	ENST00000416293		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
In-frame	ENST00000550735	ENST00000261733		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
In-frame	ENST00000551404	ENST00000416293		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
In-frame	ENST00000551404	ENST00000261733		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
intron-3CDS	ENST00000547305	ENST00000416293		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
intron-3CDS	ENST00000547305	ENST00000261733		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
intron-3CDS	ENST00000546394	ENST00000416293		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
intron-3CDS	ENST00000546394	ENST00000261733		TCGA	LD	STAD	TCGA-BR-A452-01A	MAPKAPK5	chr12	112318331	+	ALDH2	chr12	112219722	+
intron-intron	ENST00000265465	ENST00000279281		TCGA	LD	STAD	TCGA-BR-A452-01A	POLA2	chr11	65035080	+	VPS51	chr11	64878597	+
intron-intron	ENST00000265465	ENST00000527646		TCGA	LD	STAD	TCGA-BR-A452-01A	POLA2	chr11	65035080	+	VPS51	chr11	64878597	+
intron-intron	ENST00000541089	ENST00000279281		TCGA	LD	STAD	TCGA-BR-A452-01A	POLA2	chr11	65035080	+	VPS51	chr11	64878597	+
intron-intron	ENST00000541089	ENST00000527646		TCGA	LD	STAD	TCGA-BR-A452-01A	POLA2	chr11	65035080	+	VPS51	chr11	64878597	+
intron-intron	ENST00000534785	ENST00000279281		TCGA	LD	STAD	TCGA-BR-A452-01A	POLA2	chr11	65035080	+	VPS51	chr11	64878597	+
intron-intron	ENST00000534785	ENST00000527646		TCGA	LD	STAD	TCGA-BR-A452-01A	POLA2	chr11	65035080	+	VPS51	chr11	64878597	+
5CDS-intron	ENST00000519824	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000519824	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000522746	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000522746	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000523509	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000523509	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000401979	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000401979	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000519110	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000519110	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5UTR-intron	ENST00000522250	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5UTR-5UTR	ENST00000522250	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000517654	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000517654	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-intron	ENST00000519540	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000519540	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
intron-intron	ENST00000522941	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
intron-5UTR	ENST00000522941	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5UTR-intron	ENST00000518879	ENST00000276616		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5UTR-5UTR	ENST00000518879	ENST00000517981		TCGA	LD	STAD	TCGA-BR-A4CR-01A	FAM49B	chr8	130874475	-	PSKH2	chr8	87086400	-
5CDS-5UTR	ENST00000225823	ENST00000501396		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000225823	ENST00000502082		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000225823	ENST00000523825		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5CDS-intron	ENST00000225823	ENST00000502056		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000359872	ENST00000501396		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000359872	ENST00000502082		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000359872	ENST00000523825		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
intron-intron	ENST00000359872	ENST00000502056		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5UTR-5UTR	ENST00000448983	ENST00000501396		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5UTR-5UTR	ENST00000448983	ENST00000502082		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5UTR-5UTR	ENST00000448983	ENST00000523825		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
5UTR-intron	ENST00000448983	ENST00000502056		TCGA	LD	STAD	TCGA-BR-A4J1-01A	ASIC2	chr17	31618426	-	CASC8	chr8	128302305	-
intron-5UTR	ENST00000302979	ENST00000311549		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000302979	ENST00000272274		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000302979	ENST00000319826		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000302979	ENST00000326092		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
5CDS-5UTR	ENST00000399697	ENST00000311549		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
5CDS-5UTR	ENST00000399697	ENST00000272274		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
5CDS-5UTR	ENST00000399697	ENST00000319826		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
5CDS-5UTR	ENST00000399697	ENST00000326092		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
3UTR-5UTR	ENST00000465887	ENST00000311549		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
3UTR-5UTR	ENST00000465887	ENST00000272274		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
3UTR-5UTR	ENST00000465887	ENST00000319826		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
3UTR-5UTR	ENST00000465887	ENST00000326092		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000399696	ENST00000311549		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000399696	ENST00000272274		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000399696	ENST00000319826		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-5UTR	ENST00000399696	ENST00000326092		TCGA	LD	STAD	TCGA-BR-A4J1-01A	POLR1D	chr13	28222590	+	RPL21	chr13	27827902	+
intron-3UTR	ENST00000322213	ENST00000342160		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-3UTR	ENST00000322213	ENST00000262854		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-intron	ENST00000322213	ENST00000474288		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-intron	ENST00000322213	ENST00000218328		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-3UTR	ENST00000469129	ENST00000342160		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-3UTR	ENST00000469129	ENST00000262854		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-intron	ENST00000469129	ENST00000474288		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-intron	ENST00000469129	ENST00000218328		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-3UTR	ENST00000375340	ENST00000342160		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-3UTR	ENST00000375340	ENST00000262854		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-intron	ENST00000375340	ENST00000474288		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
intron-intron	ENST00000375340	ENST00000218328		TCGA	LD	STAD	TCGA-BR-A4J1-01A	SMC1A	chrX	53404872	-	HUWE1	chrX	53559713	-
Frame-shit	ENST00000263650	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000263650	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000263650	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000263650	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000389989	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000389989	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000389989	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000389989	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
In-frame	ENST00000525498	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
In-frame	ENST00000525498	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
In-frame	ENST00000525498	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
In-frame	ENST00000525498	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000542243	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000542243	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000542243	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000542243	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000348039	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000348039	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000348039	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
Frame-shit	ENST00000348039	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000478260	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000478260	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000478260	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000478260	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000528124	ENST00000155858		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000528124	ENST00000452833		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000528124	ENST00000533060		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
intron-3CDS	ENST00000528124	ENST00000528453		TCGA	LD	STAD	TCGA-BR-A4J4-01A	OSBPL5	chr11	3125423	-	TRPM5	chr11	2427321	-
In-frame	ENST00000393276	ENST00000393316		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393276	ENST00000488450		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393276	ENST00000393320		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393276	ENST00000471267		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
In-frame	ENST00000393274	ENST00000393316		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393274	ENST00000488450		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393274	ENST00000393320		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393274	ENST00000471267		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
In-frame	ENST00000393277	ENST00000393316		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393277	ENST00000488450		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393277	ENST00000393320		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5CDS-intron	ENST00000393277	ENST00000471267		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5UTR-3CDS	ENST00000481894	ENST00000393316		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5UTR-intron	ENST00000481894	ENST00000488450		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5UTR-intron	ENST00000481894	ENST00000393320		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
5UTR-intron	ENST00000481894	ENST00000471267		TCGA	LD	STAD	TCGA-BR-A4J6-01A	DENND2C	chr1	115161007	-	BCL2L15	chr1	114429280	-
In-frame	ENST00000228740	ENST00000565488		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
In-frame	ENST00000228740	ENST00000370041		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
5CDS-intron	ENST00000228740	ENST00000569674		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
In-frame	ENST00000552789	ENST00000565488		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
In-frame	ENST00000552789	ENST00000370041		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
5CDS-intron	ENST00000552789	ENST00000569674		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
Frame-shit	ENST00000413268	ENST00000565488		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
Frame-shit	ENST00000413268	ENST00000370041		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
5CDS-intron	ENST00000413268	ENST00000569674		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
5UTR-3CDS	ENST00000548375	ENST00000565488		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
5UTR-3CDS	ENST00000548375	ENST00000370041		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
5UTR-intron	ENST00000548375	ENST00000569674		TCGA	LD	STAD	TCGA-BR-A4J6-01A	LTA4H	chr12	96402872	-	SLC25A24	chr1	108686332	-
In-frame	ENST00000249270	ENST00000297785		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
In-frame	ENST00000249270	ENST00000376939		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
5CDS-5UTR	ENST00000249270	ENST00000482210		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
In-frame	ENST00000379263	ENST00000297785		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
In-frame	ENST00000379263	ENST00000376939		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
5CDS-5UTR	ENST00000379263	ENST00000482210		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
In-frame	ENST00000412522	ENST00000297785		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
In-frame	ENST00000412522	ENST00000376939		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
5CDS-5UTR	ENST00000412522	ENST00000482210		TCGA	LD	STAD	TCGA-BR-A4PE-01A	DNAJC2	chr7	102985006	-	ALDH1A1	chr9	75545935	-
5CDS-intron	ENST00000562057	ENST00000239944		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000562057	ENST00000479209		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000562057	ENST00000487153		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000562057	ENST00000491660		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000562057	ENST00000490945		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000344051	ENST00000239944		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000344051	ENST00000479209		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000344051	ENST00000487153		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000344051	ENST00000491660		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000344051	ENST00000490945		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000431806	ENST00000239944		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000431806	ENST00000479209		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000431806	ENST00000487153		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-intron	ENST00000431806	ENST00000491660		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
5CDS-5UTR	ENST00000431806	ENST00000490945		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SPINT1	chr15	41137227	+	SERP1	chr3	150284893	-
Frame-shit	ENST00000373715	ENST00000339488		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SRSF3	chr6	36566760	+	PTCHD4	chr6	47976850	-
Frame-shit	ENST00000373715	ENST00000543600		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SRSF3	chr6	36566760	+	PTCHD4	chr6	47976850	-
Frame-shit	ENST00000339436	ENST00000339488		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SRSF3	chr6	36566760	+	PTCHD4	chr6	47976850	-
Frame-shit	ENST00000339436	ENST00000543600		TCGA	LD	STAD	TCGA-BR-A4PE-01A	SRSF3	chr6	36566760	+	PTCHD4	chr6	47976850	-
Frame-shit	ENST00000397035	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5CDS-5UTR	ENST00000397035	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
Frame-shit	ENST00000397041	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5CDS-5UTR	ENST00000397041	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
Frame-shit	ENST00000309890	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5CDS-5UTR	ENST00000309890	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5UTR-3CDS	ENST00000397039	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5UTR-5UTR	ENST00000397039	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
Frame-shit	ENST00000359983	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5CDS-5UTR	ENST00000359983	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
Frame-shit	ENST00000352011	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5CDS-5UTR	ENST00000352011	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
Frame-shit	ENST00000397043	ENST00000381638		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
5CDS-5UTR	ENST00000397043	ENST00000574474		TCGA	LD	STAD	TCGA-BR-A4PF-01A	ATP2A3	chr17	3867468	-	ZZEF1	chr17	3999994	-
intron-intron	ENST00000312156	ENST00000330828		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-3UTR	ENST00000312156	ENST00000527783		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-intron	ENST00000435572	ENST00000330828		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-3UTR	ENST00000435572	ENST00000527783		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-intron	ENST00000540264	ENST00000330828		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-3UTR	ENST00000540264	ENST00000527783		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-intron	ENST00000553070	ENST00000330828		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
intron-3UTR	ENST00000553070	ENST00000527783		TCGA	LD	STAD	TCGA-BR-A4PF-01A	NFE2	chr12	54686013	-	C12orf60	chr12	15056941	+
In-frame	ENST00000353139	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000353139	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000353139	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000353139	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-5UTR	ENST00000353139	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-3UTR	ENST00000353139	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000360679	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000360679	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000360679	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
In-frame	ENST00000360679	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-5UTR	ENST00000360679	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-3UTR	ENST00000360679	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000394406	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000394406	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000394406	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000394406	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-5UTR	ENST00000394406	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-3UTR	ENST00000394406	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000335166	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000335166	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000335166	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
Frame-shit	ENST00000335166	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-5UTR	ENST00000335166	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-3UTR	ENST00000335166	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000416895	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000416895	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000416895	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000416895	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-5UTR	ENST00000416895	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3UTR	ENST00000416895	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000361253	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000361253	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000361253	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000361253	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-5UTR	ENST00000361253	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3UTR	ENST00000361253	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000588142	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000588142	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000588142	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000588142	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-5UTR	ENST00000588142	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3UTR	ENST00000588142	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000589665	ENST00000310394		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000589665	ENST00000395473		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000589665	ENST00000302228		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3CDS	ENST00000589665	ENST00000313648		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-5UTR	ENST00000589665	ENST00000413914		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
intron-3UTR	ENST00000589665	ENST00000448970		TCGA	LD	STAD	TCGA-CD-5799-01A	ACACA	chr17	35627642	-	LGALS9	chr17	25965289	+
5CDS-intron	ENST00000225719	ENST00000584601		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000406381		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000541774		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000445658		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000540147		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000584450		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000269571		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000578199		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000540042		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
5CDS-intron	ENST00000225719	ENST00000584888		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000584601		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000406381		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000541774		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000445658		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000540147		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000584450		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000269571		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000578199		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000540042		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000543464	ENST00000584888		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000584601		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000406381		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000541774		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000445658		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000540147		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000584450		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000269571		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000578199		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000540042		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
intron-intron	ENST00000584051	ENST00000584888		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28706532	+	ERBB2	chr17	37875611	+
Frame-shit	ENST00000225719	ENST00000225512		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28712254	+	WNT3	chr17	44851275	-
5CDS-intron	ENST00000225719	ENST00000572508		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28712254	+	WNT3	chr17	44851275	-
Frame-shit	ENST00000543464	ENST00000225512		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28712254	+	WNT3	chr17	44851275	-
5CDS-intron	ENST00000543464	ENST00000572508		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28712254	+	WNT3	chr17	44851275	-
intron-3CDS	ENST00000584051	ENST00000225512		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28712254	+	WNT3	chr17	44851275	-
intron-intron	ENST00000584051	ENST00000572508		TCGA	LD	STAD	TCGA-CD-5799-01A	CPD	chr17	28712254	+	WNT3	chr17	44851275	-
5UTR-5UTR	ENST00000378609	ENST00000341426		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000341991		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000378625		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000344463		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000378609	ENST00000492768		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000378609	ENST00000342348		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341426		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000341991		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000378625		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000344463		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-5UTR	ENST00000472614	ENST00000492768		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
5UTR-intron	ENST00000472614	ENST00000342348		TCGA	LD	STAD	TCGA-CD-5800-01A	GNB1	chr1	1822259	-	NADK	chr1	1696885	-
In-frame	ENST00000222120	ENST00000252674		TCGA	LD	STAD	TCGA-CD-5800-01A	RAB3D	chr19	11446123	-	MLLT1	chr19	6227113	-
5CDS-intron	ENST00000222120	ENST00000585588		TCGA	LD	STAD	TCGA-CD-5800-01A	RAB3D	chr19	11446123	-	MLLT1	chr19	6227113	-
Frame-shit	ENST00000589655	ENST00000252674		TCGA	LD	STAD	TCGA-CD-5800-01A	RAB3D	chr19	11446123	-	MLLT1	chr19	6227113	-
5CDS-intron	ENST00000589655	ENST00000585588		TCGA	LD	STAD	TCGA-CD-5800-01A	RAB3D	chr19	11446123	-	MLLT1	chr19	6227113	-
intron-5UTR	ENST00000264818	ENST00000171111		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-5UTR	ENST00000264818	ENST00000393623		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-intron	ENST00000264818	ENST00000588024		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-5UTR	ENST00000524462	ENST00000171111		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-5UTR	ENST00000524462	ENST00000393623		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-intron	ENST00000524462	ENST00000588024		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5UTR-5UTR	ENST00000525621	ENST00000171111		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5UTR-5UTR	ENST00000525621	ENST00000393623		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5UTR-intron	ENST00000525621	ENST00000588024		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5UTR-5UTR	ENST00000529370	ENST00000171111		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5UTR-5UTR	ENST00000529370	ENST00000393623		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5UTR-intron	ENST00000529370	ENST00000588024		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-5UTR	ENST00000529422	ENST00000171111		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-5UTR	ENST00000529422	ENST00000393623		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
intron-intron	ENST00000529422	ENST00000588024		TCGA	LD	STAD	TCGA-CD-5800-01A	TYK2	chr19	10490291	-	KEAP1	chr19	10610756	-
5CDS-intron	ENST00000400788	ENST00000461783		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-3UTR	ENST00000400788	ENST00000449545		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000367174		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000456144		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000318981		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000360366		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000529824		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000456877		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000528391		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
5CDS-intron	ENST00000400788	ENST00000275246		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000461783		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-3UTR	ENST00000367144	ENST00000449545		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000367174		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000456144		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000318981		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000360366		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000529824		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000456877		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000528391		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-intron	ENST00000367144	ENST00000275246		TCGA	LD	STAD	TCGA-CD-5803-01A	TMEM242	chr6	157739814	-	TIAM2	chr6	155228864	+
intron-3CDS	ENST00000367094	ENST00000369799		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-intron	ENST00000367094	ENST00000475081		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-intron	ENST00000367094	ENST00000359172		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-intron	ENST00000367094	ENST00000393614		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-3CDS	ENST00000367097	ENST00000369799		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-intron	ENST00000367097	ENST00000475081		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-intron	ENST00000367097	ENST00000359172		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
intron-intron	ENST00000367097	ENST00000393614		TCGA	LD	STAD	TCGA-CD-5803-01A	TULP4	chr6	158653335	+	AHCYL1	chr1	110561174	+
In-frame	ENST00000400301	ENST00000290167		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000400301	ENST00000542383		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000308271	ENST00000290167		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000308271	ENST00000542383		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000374732	ENST00000290167		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000374732	ENST00000542383		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000529637	ENST00000290167		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000529637	ENST00000542383		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000479177	ENST00000290167		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000479177	ENST00000542383		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000421625	ENST00000290167		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
In-frame	ENST00000421625	ENST00000542383		TCGA	LD	STAD	TCGA-CD-5804-01A	USP48	chr1	22062939	-	WNT4	chr1	22448069	-
5UTR-3CDS	ENST00000307845	ENST00000381813		TCGA	LD	STAD	TCGA-CD-5813-01A	HPCAL1	chr2	10443303	+	CYS1	chr2	10206083	-
5UTR-5UTR	ENST00000307845	ENST00000477304		TCGA	LD	STAD	TCGA-CD-5813-01A	HPCAL1	chr2	10443303	+	CYS1	chr2	10206083	-
intron-3CDS	ENST00000381765	ENST00000381813		TCGA	LD	STAD	TCGA-CD-5813-01A	HPCAL1	chr2	10443303	+	CYS1	chr2	10206083	-
intron-5UTR	ENST00000381765	ENST00000477304		TCGA	LD	STAD	TCGA-CD-5813-01A	HPCAL1	chr2	10443303	+	CYS1	chr2	10206083	-
5CDS-5UTR	ENST00000295087	ENST00000263341		TCGA	LD	STAD	TCGA-CD-8524-01A	ARL5A	chr2	152668871	-	IL1B	chr2	113593821	-
5CDS-5UTR	ENST00000295087	ENST00000491056		TCGA	LD	STAD	TCGA-CD-8524-01A	ARL5A	chr2	152668871	-	IL1B	chr2	113593821	-
5CDS-5UTR	ENST00000428992	ENST00000263341		TCGA	LD	STAD	TCGA-CD-8524-01A	ARL5A	chr2	152668871	-	IL1B	chr2	113593821	-
5CDS-5UTR	ENST00000428992	ENST00000491056		TCGA	LD	STAD	TCGA-CD-8524-01A	ARL5A	chr2	152668871	-	IL1B	chr2	113593821	-
intron-5UTR	ENST00000487723	ENST00000263341		TCGA	LD	STAD	TCGA-CD-8524-01A	ARL5A	chr2	152668871	-	IL1B	chr2	113593821	-
intron-5UTR	ENST00000487723	ENST00000491056		TCGA	LD	STAD	TCGA-CD-8524-01A	ARL5A	chr2	152668871	-	IL1B	chr2	113593821	-
5CDS-intron	ENST00000512062	ENST00000540266		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000512062	ENST00000539019		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000512062	ENST00000422622		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000512062	ENST00000242729		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000512062	ENST00000535504		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000307892	ENST00000540266		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000307892	ENST00000539019		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000307892	ENST00000422622		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000307892	ENST00000242729		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000307892	ENST00000535504		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000515314	ENST00000540266		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000515314	ENST00000539019		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000515314	ENST00000422622		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000515314	ENST00000242729		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000515314	ENST00000535504		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000561792	ENST00000540266		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000561792	ENST00000539019		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000561792	ENST00000422622		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000561792	ENST00000242729		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
5CDS-intron	ENST00000561792	ENST00000535504		TCGA	LD	STAD	TCGA-CD-8524-01A	CYB5B	chr16	69458760	+	SSPN	chr12	26405801	+
In-frame	ENST00000360843	ENST00000434536		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
In-frame	ENST00000360843	ENST00000252512		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000360843	ENST00000518017		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000360843	ENST00000433566		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
In-frame	ENST00000431350	ENST00000434536		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
In-frame	ENST00000431350	ENST00000252512		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000431350	ENST00000518017		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5CDS-3UTR	ENST00000431350	ENST00000433566		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5UTR-3CDS	ENST00000442919	ENST00000434536		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5UTR-3CDS	ENST00000442919	ENST00000252512		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5UTR-3UTR	ENST00000442919	ENST00000518017		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
5UTR-3UTR	ENST00000442919	ENST00000433566		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3CDS	ENST00000521943	ENST00000434536		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3CDS	ENST00000521943	ENST00000252512		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3UTR	ENST00000521943	ENST00000518017		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3UTR	ENST00000521943	ENST00000433566		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3CDS	ENST00000434911	ENST00000434536		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3CDS	ENST00000434911	ENST00000252512		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3UTR	ENST00000434911	ENST00000518017		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3UTR	ENST00000434911	ENST00000433566		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3CDS	ENST00000486857	ENST00000434536		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3CDS	ENST00000486857	ENST00000252512		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3UTR	ENST00000486857	ENST00000518017		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
intron-3UTR	ENST00000486857	ENST00000433566		TCGA	LD	STAD	TCGA-CD-8524-01A	TLK1	chr2	172016800	-	XPO7	chr8	21824368	+
In-frame	ENST00000221455	ENST00000425690		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000221455	ENST00000344956		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000221455	ENST00000403059		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000221455	ENST00000406449		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000391953	ENST00000425690		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000391953	ENST00000344956		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000391953	ENST00000403059		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000391953	ENST00000406449		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000544944	ENST00000425690		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000544944	ENST00000344956		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000544944	ENST00000403059		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
In-frame	ENST00000544944	ENST00000406449		TCGA	LD	STAD	TCGA-CD-8525-01A	CLASRP	chr19	45573362	+	PVR	chr19	45157169	+
5UTR-3CDS	ENST00000539409	ENST00000587541		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000539409	ENST00000215637		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000539409	ENST00000346144		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000539409	ENST00000382683		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000337682	ENST00000587541		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000337682	ENST00000215637		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000337682	ENST00000346144		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000337682	ENST00000382683		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
intron-3CDS	ENST00000454658	ENST00000587541		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
intron-3CDS	ENST00000454658	ENST00000215637		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
intron-intron	ENST00000454658	ENST00000346144		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
intron-intron	ENST00000454658	ENST00000382683		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000395766	ENST00000587541		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000395766	ENST00000215637		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000395766	ENST00000346144		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000395766	ENST00000382683		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000542983	ENST00000587541		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000542983	ENST00000215637		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000542983	ENST00000346144		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000542983	ENST00000382683		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000536836	ENST00000587541		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-3CDS	ENST00000536836	ENST00000215637		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000536836	ENST00000346144		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
5UTR-intron	ENST00000536836	ENST00000382683		TCGA	LD	STAD	TCGA-CD-8525-01A	FAM60A	chr12	31478958	-	MADCAM1	chr19	501669	+
intron-3UTR	ENST00000576906	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
intron-3UTR	ENST00000407558	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
intron-3UTR	ENST00000608722	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
intron-3UTR	ENST00000424546	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
intron-3UTR	ENST00000573580	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000421765	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000610180	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000608993	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000360862	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000414063	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
3UTR-3UTR	ENST00000570551	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000572942	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000576916	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000575076	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000577013	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3UTR	ENST00000570819	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
intron-3UTR	ENST00000572584	ENST00000445369		TCGA	LD	STAD	TCGA-CD-8525-01A	NAA60	chr16	3508181	+	CLDN9	chr16	3064300	+
5UTR-3CDS	ENST00000427410	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000427410	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000427410	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3UTR	ENST00000427410	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000447388	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000447388	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3UTR	ENST00000447388	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000425457	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000425457	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3UTR	ENST00000425457	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000456393	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000456393	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3UTR	ENST00000456393	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3CDS	ENST00000372654	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-intron	ENST00000372654	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
5UTR-3UTR	ENST00000372654	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372653	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372653	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3UTR	ENST00000372653	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372652	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372652	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3UTR	ENST00000372652	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000372651	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000372651	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3UTR	ENST00000372651	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000440226	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000440226	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3UTR	ENST00000440226	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000308733	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000308733	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3UTR	ENST00000308733	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000262915		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000351035		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372374		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000353126		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000545417		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000330208		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000335430		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372377		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000361392		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000361400		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000347631		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000361812		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372362		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000531451		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372366		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372365		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372368		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000332628		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3CDS	ENST00000483091	ENST00000372372		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000531816		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000528371		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000372369		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000531993		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000361746		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000533933		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-intron	ENST00000483091	ENST00000372367		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
intron-3UTR	ENST00000483091	ENST00000461375		TCGA	LD	STAD	TCGA-CD-8525-01A	NFYC	chr1	41157539	+	ST3GAL3	chr1	44360055	+
In-frame	ENST00000361175	ENST00000308448		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
In-frame	ENST00000361175	ENST00000328142		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
In-frame	ENST00000361175	ENST00000400215		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000361175	ENST00000541004		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000361175	ENST00000495903		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
In-frame	ENST00000456849	ENST00000308448		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
In-frame	ENST00000456849	ENST00000328142		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
In-frame	ENST00000456849	ENST00000400215		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000456849	ENST00000541004		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
5CDS-intron	ENST00000456849	ENST00000495903		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000427144	ENST00000308448		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000427144	ENST00000328142		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000427144	ENST00000400215		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000427144	ENST00000541004		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000427144	ENST00000495903		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000482258	ENST00000308448		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000482258	ENST00000328142		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-3CDS	ENST00000482258	ENST00000400215		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000482258	ENST00000541004		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
intron-intron	ENST00000482258	ENST00000495903		TCGA	LD	STAD	TCGA-CD-8525-01A	PAPSS2	chr10	89419765	+	ATAD1	chr10	89516679	-
5CDS-5UTR	ENST00000267202	ENST00000356805		TCGA	LD	STAD	TCGA-CD-8525-01A	VPS37B	chr12	123380499	-	SPTBN1	chr2	54753509	+
5CDS-intron	ENST00000267202	ENST00000333896		TCGA	LD	STAD	TCGA-CD-8525-01A	VPS37B	chr12	123380499	-	SPTBN1	chr2	54753509	+
Frame-shit	ENST00000430249	ENST00000353487		TCGA	LD	STAD	TCGA-CD-8526-01A	CPS1	chr2	211460306	+	SPPL3	chr12	121248689	-
Frame-shit	ENST00000233072	ENST00000353487		TCGA	LD	STAD	TCGA-CD-8526-01A	CPS1	chr2	211460306	+	SPPL3	chr12	121248689	-
Frame-shit	ENST00000451903	ENST00000353487		TCGA	LD	STAD	TCGA-CD-8526-01A	CPS1	chr2	211460306	+	SPPL3	chr12	121248689	-
intron-3CDS	ENST00000497121	ENST00000353487		TCGA	LD	STAD	TCGA-CD-8526-01A	CPS1	chr2	211460306	+	SPPL3	chr12	121248689	-
3UTR-3CDS	ENST00000578646	ENST00000592179		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
3UTR-3CDS	ENST00000578646	ENST00000322980		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
3UTR-intron	ENST00000578646	ENST00000585908		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
3UTR-intron	ENST00000578646	ENST00000284207		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
3UTR-intron	ENST00000578646	ENST00000586511		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
intron-3CDS	ENST00000261537	ENST00000592179		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
intron-3CDS	ENST00000261537	ENST00000322980		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
intron-intron	ENST00000261537	ENST00000585908		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
intron-intron	ENST00000261537	ENST00000284207		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
intron-intron	ENST00000261537	ENST00000586511		TCGA	LD	STAD	TCGA-CD-8526-01A	MIB1	chr18	19285084	+	ANKRD29	chr18	21181273	-
In-frame	ENST00000241436	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5CDS-3UTR	ENST00000241436	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
In-frame	ENST00000352007	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5CDS-3UTR	ENST00000352007	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
3UTR-3CDS	ENST00000506928	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
3UTR-3UTR	ENST00000506928	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
In-frame	ENST00000515295	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5CDS-3UTR	ENST00000515295	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
In-frame	ENST00000508526	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5CDS-3UTR	ENST00000508526	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
In-frame	ENST00000504026	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5CDS-3UTR	ENST00000504026	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5UTR-3CDS	ENST00000380481	ENST00000601380		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
5UTR-3UTR	ENST00000380481	ENST00000506596		TCGA	LD	STAD	TCGA-CD-8526-01A	POLK	chr5	74848416	+	ANKDD1B	chr5	74948967	+
In-frame	ENST00000353487	ENST00000430249		TCGA	LD	STAD	TCGA-CD-8526-01A	SPPL3	chr12	121341648	-	CPS1	chr2	211421443	+
5CDS-5UTR	ENST00000353487	ENST00000233072		TCGA	LD	STAD	TCGA-CD-8526-01A	SPPL3	chr12	121341648	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000353487	ENST00000451903		TCGA	LD	STAD	TCGA-CD-8526-01A	SPPL3	chr12	121341648	-	CPS1	chr2	211421443	+
5CDS-intron	ENST00000353487	ENST00000497121		TCGA	LD	STAD	TCGA-CD-8526-01A	SPPL3	chr12	121341648	-	CPS1	chr2	211421443	+
Frame-shit	ENST00000455446	ENST00000563630		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000455446	ENST00000431526		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000455446	ENST00000562103		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
In-frame	ENST00000397356	ENST00000563630		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000397356	ENST00000431526		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000397356	ENST00000562103		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000397353	ENST00000563630		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
In-frame	ENST00000397353	ENST00000431526		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
In-frame	ENST00000397353	ENST00000562103		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
intron-3CDS	ENST00000567398	ENST00000563630		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
intron-3CDS	ENST00000567398	ENST00000431526		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
intron-3CDS	ENST00000567398	ENST00000562103		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
In-frame	ENST00000566709	ENST00000563630		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000566709	ENST00000431526		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000566709	ENST00000562103		TCGA	LD	STAD	TCGA-CD-8527-01A	HAGH	chr16	1869898	-	ZNF598	chr16	2048586	-
Frame-shit	ENST00000262370	ENST00000444310		TCGA	LD	STAD	TCGA-CD-8527-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4644352	+
Frame-shit	ENST00000415496	ENST00000444310		TCGA	LD	STAD	TCGA-CD-8527-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4644352	+
Frame-shit	ENST00000399577	ENST00000444310		TCGA	LD	STAD	TCGA-CD-8527-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4644352	+
Frame-shit	ENST00000588994	ENST00000444310		TCGA	LD	STAD	TCGA-CD-8527-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4644352	+
Frame-shit	ENST00000586183	ENST00000444310		TCGA	LD	STAD	TCGA-CD-8527-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4644352	+
intron-3CDS	ENST00000588015	ENST00000444310		TCGA	LD	STAD	TCGA-CD-8527-01A	MGRN1	chr16	4675049	+	C16orf96	chr16	4644352	+
intron-3UTR	ENST00000543788	ENST00000260766		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-3UTR	ENST00000543788	ENST00000371380		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-3UTR	ENST00000543788	ENST00000371385		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-intron	ENST00000543788	ENST00000371375		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-intron	ENST00000543788	ENST00000464214		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5CDS-3UTR	ENST00000371361	ENST00000260766		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5CDS-3UTR	ENST00000371361	ENST00000371380		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5CDS-3UTR	ENST00000371361	ENST00000371385		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5CDS-intron	ENST00000371361	ENST00000371375		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5CDS-intron	ENST00000371361	ENST00000464214		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-3UTR	ENST00000371350	ENST00000260766		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-3UTR	ENST00000371350	ENST00000371380		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-3UTR	ENST00000371350	ENST00000371385		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-intron	ENST00000371350	ENST00000371375		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
intron-intron	ENST00000371350	ENST00000464214		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5UTR-3UTR	ENST00000463649	ENST00000260766		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5UTR-3UTR	ENST00000463649	ENST00000371380		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5UTR-3UTR	ENST00000463649	ENST00000371385		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5UTR-intron	ENST00000463649	ENST00000371375		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5UTR-intron	ENST00000463649	ENST00000464214		TCGA	LD	STAD	TCGA-CD-8527-01A	NOC3L	chr10	96122587	-	PLCE1	chr10	96087725	+
5CDS-5UTR	ENST00000378004	ENST00000338252		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000508830		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000359176		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000395812		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000325674		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000395813		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000510756		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000378004	ENST00000508608		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000341926		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000511049		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000309190		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000509903		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000511782		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000504465		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000348386		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000508579		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000378004	ENST00000515663		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000338252		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000508830		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000359176		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000395812		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000325674		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000395813		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000510756		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000274498	ENST00000508608		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000341926		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000511049		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000309190		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000509903		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000511782		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000504465		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000348386		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000508579		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-intron	ENST00000274498	ENST00000515663		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000338252		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000508830		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000359176		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000395812		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000325674		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000395813		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000510756		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-5UTR	ENST00000486650	ENST00000508608		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000341926		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000511049		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000309190		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000509903		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000511782		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000504465		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000348386		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000508579		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
intron-intron	ENST00000486650	ENST00000515663		TCGA	LD	STAD	TCGA-CD-8528-01A	ARHGAP26	chr5	142311690	+	CAST	chr5	96011243	+
5CDS-5UTR	ENST00000343245	ENST00000501396		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000343245	ENST00000502082		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000343245	ENST00000523825		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000343245	ENST00000502056		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-5UTR	ENST00000369070	ENST00000501396		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000369070	ENST00000502082		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000369070	ENST00000523825		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000369070	ENST00000502056		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-5UTR	ENST00000369076	ENST00000501396		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000369076	ENST00000502082		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000369076	ENST00000523825		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5CDS-intron	ENST00000369076	ENST00000502056		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
3UTR-5UTR	ENST00000360666	ENST00000501396		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
3UTR-intron	ENST00000360666	ENST00000502082		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
3UTR-intron	ENST00000360666	ENST00000523825		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
3UTR-intron	ENST00000360666	ENST00000502056		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5UTR-5UTR	ENST00000475645	ENST00000501396		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5UTR-intron	ENST00000475645	ENST00000502082		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5UTR-intron	ENST00000475645	ENST00000523825		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
5UTR-intron	ENST00000475645	ENST00000502056		TCGA	LD	STAD	TCGA-CD-8528-01A	ATG5	chr6	106649847	-	CASC8	chr8	128335399	-
In-frame	ENST00000355237	ENST00000378004		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000355237	ENST00000274498		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000355237	ENST00000486650		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000396442	ENST00000378004		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000396442	ENST00000274498		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000396442	ENST00000486650		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000380766	ENST00000378004		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000380766	ENST00000274498		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-intron	ENST00000380766	ENST00000486650		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000538151	ENST00000378004		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000538151	ENST00000274498		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000538151	ENST00000486650		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000542132	ENST00000378004		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000542132	ENST00000274498		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-intron	ENST00000542132	ENST00000486650		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000514370	ENST00000378004		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000514370	ENST00000274498		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-intron	ENST00000514370	ENST00000486650		TCGA	LD	STAD	TCGA-CD-8528-01A	OCLN	chr5	68809936	+	ARHGAP26	chr5	142393645	+
intron-3CDS	ENST00000408388	ENST00000369046		TCGA	LD	STAD	TCGA-CD-8528-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
intron-intron	ENST00000408388	ENST00000467262		TCGA	LD	STAD	TCGA-CD-8528-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
intron-intron	ENST00000408388	ENST00000369044		TCGA	LD	STAD	TCGA-CD-8528-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
5CDS-intron	ENST00000380516	ENST00000563128		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5CDS-intron	ENST00000380516	ENST00000300215		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5CDS-intron	ENST00000380516	ENST00000540029		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5CDS-intron	ENST00000380516	ENST00000441366		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
intron-intron	ENST00000536328	ENST00000563128		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
intron-intron	ENST00000536328	ENST00000300215		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
intron-intron	ENST00000536328	ENST00000540029		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
intron-intron	ENST00000536328	ENST00000441366		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5UTR-intron	ENST00000557950	ENST00000563128		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5UTR-intron	ENST00000557950	ENST00000300215		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5UTR-intron	ENST00000557950	ENST00000540029		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
5UTR-intron	ENST00000557950	ENST00000441366		TCGA	LD	STAD	TCGA-CD-8528-01A	SLTM	chr15	59224555	-	EPB42	chr15	43423340	-
intron-5UTR	ENST00000420908	ENST00000396328		TCGA	LD	STAD	TCGA-CD-8528-01A	UBE2Q2P2	chr15	83024079	+	WDR72	chr15	54025358	-
intron-5UTR	ENST00000420908	ENST00000557913		TCGA	LD	STAD	TCGA-CD-8528-01A	UBE2Q2P2	chr15	83024079	+	WDR72	chr15	54025358	-
intron-5UTR	ENST00000420908	ENST00000360509		TCGA	LD	STAD	TCGA-CD-8528-01A	UBE2Q2P2	chr15	83024079	+	WDR72	chr15	54025358	-
intron-5UTR	ENST00000420908	ENST00000559418		TCGA	LD	STAD	TCGA-CD-8528-01A	UBE2Q2P2	chr15	83024079	+	WDR72	chr15	54025358	-
intron-intron	ENST00000420908	ENST00000567224		TCGA	LD	STAD	TCGA-CD-8528-01A	UBE2Q2P2	chr15	83024079	+	WDR72	chr15	54025358	-
intron-3CDS	ENST00000381815	ENST00000390545		TCGA	LD	STAD	TCGA-CD-8529-01A	GART	chr21	34889796	-	IGHG2	chr14	106111126	-
intron-3CDS	ENST00000381831	ENST00000390545		TCGA	LD	STAD	TCGA-CD-8529-01A	GART	chr21	34889796	-	IGHG2	chr14	106111126	-
intron-3CDS	ENST00000381839	ENST00000390545		TCGA	LD	STAD	TCGA-CD-8529-01A	GART	chr21	34889796	-	IGHG2	chr14	106111126	-
intron-3CDS	ENST00000543717	ENST00000390545		TCGA	LD	STAD	TCGA-CD-8529-01A	GART	chr21	34889796	-	IGHG2	chr14	106111126	-
intron-3CDS	ENST00000361093	ENST00000390545		TCGA	LD	STAD	TCGA-CD-8529-01A	GART	chr21	34889796	-	IGHG2	chr14	106111126	-
intron-3CDS	ENST00000497313	ENST00000390545		TCGA	LD	STAD	TCGA-CD-8529-01A	GART	chr21	34889796	-	IGHG2	chr14	106111126	-
5CDS-5UTR	ENST00000406486	ENST00000305344		TCGA	LD	STAD	TCGA-CD-8529-01A	KIAA1671	chr22	25577790	+	HTR1E	chr6	87724868	+
5CDS-5UTR	ENST00000358431	ENST00000305344		TCGA	LD	STAD	TCGA-CD-8529-01A	KIAA1671	chr22	25577790	+	HTR1E	chr6	87724868	+
5CDS-5UTR	ENST00000401395	ENST00000305344		TCGA	LD	STAD	TCGA-CD-8529-01A	KIAA1671	chr22	25577790	+	HTR1E	chr6	87724868	+
5UTR-3CDS	ENST00000348520	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000348520	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000380038	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000380038	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000389744	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000389744	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000557575	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557575	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000553286	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000553286	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000347839	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000347839	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000555836	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000555836	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000334553	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000334553	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000246489	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000246489	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000557450	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000557450	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000554280	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000554280	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000452929	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000452929	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3CDS	ENST00000445352	ENST00000409074		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000556253		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000247618		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-3UTR	ENST00000445352	ENST00000477116		TCGA	LD	STAD	TCGA-CD-8529-01A	KLC1	chr14	104095831	+	APOPT1	chr14	104056518	+
5UTR-5UTR	ENST00000355852	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000355852	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000355852	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000355852	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000355852	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000355852	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-5UTR	ENST00000322099	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000322099	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000322099	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000322099	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000322099	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000322099	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-5UTR	ENST00000461554	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000461554	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000461554	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000461554	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000461554	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000461554	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-5UTR	ENST00000484633	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000484633	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000484633	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000484633	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000484633	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000484633	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-5UTR	ENST00000395013	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000395013	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000395013	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000395013	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000395013	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000395013	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-5UTR	ENST00000395014	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000395014	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000395014	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000395014	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000395014	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000395014	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-5UTR	ENST00000428823	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000428823	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000428823	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000428823	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000428823	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
5UTR-intron	ENST00000428823	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-5UTR	ENST00000471622	ENST00000294189		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000471622	ENST00000466397		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000471622	ENST00000479017		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000471622	ENST00000495383		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000471622	ENST00000475248		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
intron-intron	ENST00000471622	ENST00000481629		TCGA	LD	STAD	TCGA-CD-8529-01A	PCBP4	chr3	52001342	-	RPL29	chr3	52029918	-
Frame-shit	ENST00000253925	ENST00000301838		TCGA	LD	STAD	TCGA-CD-8529-01A	PPFIA1	chr11	70118542	+	FADD	chr11	70052239	+
Frame-shit	ENST00000389547	ENST00000301838		TCGA	LD	STAD	TCGA-CD-8529-01A	PPFIA1	chr11	70118542	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000530548	ENST00000301838		TCGA	LD	STAD	TCGA-CD-8529-01A	PPFIA1	chr11	70118542	+	FADD	chr11	70052239	+
intron-3CDS	ENST00000408388	ENST00000369046		TCGA	LD	STAD	TCGA-CD-8529-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
intron-intron	ENST00000408388	ENST00000467262		TCGA	LD	STAD	TCGA-CD-8529-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
intron-intron	ENST00000408388	ENST00000369044		TCGA	LD	STAD	TCGA-CD-8529-01A	PVT1	chr8	128806980	+	QRSL1	chr6	107110855	+
5CDS-5UTR	ENST00000389467	ENST00000396324		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000389467	ENST00000452625		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000389467	ENST00000576790		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000389467	ENST00000300036		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-intron	ENST00000389467	ENST00000573908		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000446231	ENST00000396324		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000446231	ENST00000452625		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000446231	ENST00000576790		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000446231	ENST00000300036		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-intron	ENST00000446231	ENST00000573908		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000565224	ENST00000396324		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000565224	ENST00000452625		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000565224	ENST00000576790		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-5UTR	ENST00000565224	ENST00000300036		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
5CDS-intron	ENST00000565224	ENST00000573908		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
intron-5UTR	ENST00000567737	ENST00000396324		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
intron-5UTR	ENST00000567737	ENST00000452625		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
intron-5UTR	ENST00000567737	ENST00000576790		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
intron-5UTR	ENST00000567737	ENST00000300036		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
intron-intron	ENST00000567737	ENST00000573908		TCGA	LD	STAD	TCGA-CD-8529-01A	SMG1	chr16	18888453	-	MYH11	chr16	15932126	-
In-frame	ENST00000013125	ENST00000245441		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
In-frame	ENST00000013125	ENST00000389868		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
In-frame	ENST00000013125	ENST00000530997		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
In-frame	ENST00000013125	ENST00000382043		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
In-frame	ENST00000013125	ENST00000382041		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
In-frame	ENST00000013125	ENST00000324330		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
In-frame	ENST00000013125	ENST00000453196		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
5CDS-intron	ENST00000013125	ENST00000486200		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000245441		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000389868		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000530997		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000382043		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000382041		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000324330		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-3CDS	ENST00000557578	ENST00000453196		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-intron	ENST00000557578	ENST00000486200		TCGA	LD	STAD	TCGA-CD-8530-01A	MAP4K5	chr14	50971518	-	NIN	chr14	51210247	-
intron-5UTR	ENST00000301180	ENST00000303204		TCGA	LD	STAD	TCGA-CD-8531-01A	DIP2B	chr12	50898807	+	PRELID1	chr5	176730833	+
intron-5UTR	ENST00000301180	ENST00000503216		TCGA	LD	STAD	TCGA-CD-8531-01A	DIP2B	chr12	50898807	+	PRELID1	chr5	176730833	+
intron-intron	ENST00000301180	ENST00000502670		TCGA	LD	STAD	TCGA-CD-8531-01A	DIP2B	chr12	50898807	+	PRELID1	chr5	176730833	+
intron-3CDS	ENST00000311172	ENST00000525199		TCGA	LD	STAD	TCGA-CD-8531-01A	FCHSD2	chr11	72851076	-	ZNF705E	chr11	71532593	-
Frame-shit	ENST00000409314	ENST00000525199		TCGA	LD	STAD	TCGA-CD-8531-01A	FCHSD2	chr11	72851076	-	ZNF705E	chr11	71532593	-
Frame-shit	ENST00000409418	ENST00000525199		TCGA	LD	STAD	TCGA-CD-8531-01A	FCHSD2	chr11	72851076	-	ZNF705E	chr11	71532593	-
5UTR-3CDS	ENST00000458644	ENST00000525199		TCGA	LD	STAD	TCGA-CD-8531-01A	FCHSD2	chr11	72851076	-	ZNF705E	chr11	71532593	-
5UTR-3CDS	ENST00000409853	ENST00000525199		TCGA	LD	STAD	TCGA-CD-8531-01A	FCHSD2	chr11	72851076	-	ZNF705E	chr11	71532593	-
intron-3CDS	ENST00000409263	ENST00000525199		TCGA	LD	STAD	TCGA-CD-8531-01A	FCHSD2	chr11	72851076	-	ZNF705E	chr11	71532593	-
5CDS-5UTR	ENST00000354348	ENST00000406870		TCGA	LD	STAD	TCGA-CD-8531-01A	HIST1H4I	chr6	27107109	+	BCL6	chr3	187452695	-
5CDS-5UTR	ENST00000354348	ENST00000232014		TCGA	LD	STAD	TCGA-CD-8531-01A	HIST1H4I	chr6	27107109	+	BCL6	chr3	187452695	-
5CDS-intron	ENST00000354348	ENST00000450123		TCGA	LD	STAD	TCGA-CD-8531-01A	HIST1H4I	chr6	27107109	+	BCL6	chr3	187452695	-
5CDS-intron	ENST00000354348	ENST00000496823		TCGA	LD	STAD	TCGA-CD-8531-01A	HIST1H4I	chr6	27107109	+	BCL6	chr3	187452695	-
5UTR-3CDS	ENST00000319670	ENST00000341500		TCGA	LD	STAD	TCGA-CD-8533-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
5UTR-3CDS	ENST00000319670	ENST00000302850		TCGA	LD	STAD	TCGA-CD-8533-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000341500		TCGA	LD	STAD	TCGA-CD-8533-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000302850		TCGA	LD	STAD	TCGA-CD-8533-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
In-frame	ENST00000246548	ENST00000002165		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
5CDS-3UTR	ENST00000246548	ENST00000438118		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
5CDS-intron	ENST00000246548	ENST00000367585		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
In-frame	ENST00000439527	ENST00000002165		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
5CDS-3UTR	ENST00000439527	ENST00000438118		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
5CDS-intron	ENST00000439527	ENST00000367585		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
intron-3CDS	ENST00000592791	ENST00000002165		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
intron-3UTR	ENST00000592791	ENST00000438118		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
intron-intron	ENST00000592791	ENST00000367585		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
intron-3CDS	ENST00000588585	ENST00000002165		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
intron-3UTR	ENST00000588585	ENST00000438118		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
intron-intron	ENST00000588585	ENST00000367585		TCGA	LD	STAD	TCGA-CD-8533-01A	UBA2	chr19	34929671	+	FUCA2	chr6	143818634	-
5UTR-5UTR	ENST00000377022	ENST00000377008		TCGA	LD	STAD	TCGA-CD-8535-01A	CASZ1	chr1	10856621	-	C1orf127	chr1	11030125	-
5UTR-5UTR	ENST00000377022	ENST00000377004		TCGA	LD	STAD	TCGA-CD-8535-01A	CASZ1	chr1	10856621	-	C1orf127	chr1	11030125	-
5UTR-5UTR	ENST00000344008	ENST00000377008		TCGA	LD	STAD	TCGA-CD-8535-01A	CASZ1	chr1	10856621	-	C1orf127	chr1	11030125	-
5UTR-5UTR	ENST00000344008	ENST00000377004		TCGA	LD	STAD	TCGA-CD-8535-01A	CASZ1	chr1	10856621	-	C1orf127	chr1	11030125	-
intron-5UTR	ENST00000478728	ENST00000377008		TCGA	LD	STAD	TCGA-CD-8535-01A	CASZ1	chr1	10856621	-	C1orf127	chr1	11030125	-
intron-5UTR	ENST00000478728	ENST00000377004		TCGA	LD	STAD	TCGA-CD-8535-01A	CASZ1	chr1	10856621	-	C1orf127	chr1	11030125	-
Frame-shit	ENST00000371477	ENST00000353801		TCGA	LD	STAD	TCGA-CD-8535-01A	CDC5L	chr6	44376369	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000371477	ENST00000371646		TCGA	LD	STAD	TCGA-CD-8535-01A	CDC5L	chr6	44376369	+	HSP90AB1	chr6	44216367	+
In-frame	ENST00000371477	ENST00000371554		TCGA	LD	STAD	TCGA-CD-8535-01A	CDC5L	chr6	44376369	+	HSP90AB1	chr6	44216367	+
intron-3CDS	ENST00000540080	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000540080	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000540080	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000433436	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000433436	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000433436	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000538225	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000538225	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000538225	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000345519	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000345519	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000345519	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000470744	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000470744	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000470744	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000242285	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000242285	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000242285	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000466396	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000466396	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000466396	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000396603	ENST00000255006		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3CDS	ENST00000396603	ENST00000440354		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
intron-3UTR	ENST00000396603	ENST00000484638		TCGA	LD	STAD	TCGA-CD-8535-01A	CLTA	chr9	36205689	+	RIN2	chr20	19981391	+
5UTR-5UTR	ENST00000450976	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000450976	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000450976	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000450976	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-5UTR	ENST00000418281	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000418281	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000418281	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000418281	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-5UTR	ENST00000340957	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000340957	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000340957	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5UTR-intron	ENST00000340957	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-5UTR	ENST00000383847	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000383847	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000383847	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000383847	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-5UTR	ENST00000497070	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000497070	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000497070	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000497070	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-5UTR	ENST00000453072	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000453072	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000453072	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000453072	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-5UTR	ENST00000310585	ENST00000334128		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000310585	ENST00000428798		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000310585	ENST00000382489		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
intron-intron	ENST00000310585	ENST00000453435		TCGA	LD	STAD	TCGA-CD-8535-01A	FAM131A	chr3	184055159	+	HTR3D	chr3	183752845	+
5CDS-5UTR	ENST00000311117	ENST00000574590		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000311117	ENST00000575318		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000311117	ENST00000572904		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000311117	ENST00000262419		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000311117	ENST00000432791		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000311117	ENST00000393476		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000311117	ENST00000576248		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-5UTR	ENST00000334914	ENST00000574590		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-intron	ENST00000334914	ENST00000575318		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-5UTR	ENST00000334914	ENST00000572904		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-5UTR	ENST00000334914	ENST00000262419		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-5UTR	ENST00000334914	ENST00000432791		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-5UTR	ENST00000334914	ENST00000393476		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5UTR-intron	ENST00000334914	ENST00000576248		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000257745	ENST00000574590		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000257745	ENST00000575318		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000257745	ENST00000572904		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000257745	ENST00000262419		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000257745	ENST00000432791		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000257745	ENST00000393476		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000257745	ENST00000576248		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334877	ENST00000574590		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000334877	ENST00000575318		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334877	ENST00000572904		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334877	ENST00000262419		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334877	ENST00000432791		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000334877	ENST00000393476		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000334877	ENST00000576248		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000476671	ENST00000574590		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000476671	ENST00000575318		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000476671	ENST00000572904		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000476671	ENST00000262419		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000476671	ENST00000432791		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000476671	ENST00000393476		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-intron	ENST00000476671	ENST00000576248		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000480368	ENST00000574590		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-intron	ENST00000480368	ENST00000575318		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000480368	ENST00000572904		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000480368	ENST00000262419		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000480368	ENST00000432791		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-5UTR	ENST00000480368	ENST00000393476		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
intron-intron	ENST00000480368	ENST00000576248		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104681470	+	KANSL1	chr17	44249598	-
5CDS-5UTR	ENST00000311117	ENST00000535772		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000344290		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000351559		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000347967		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000262410		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000340799		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-3UTR	ENST00000311117	ENST00000570299		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000334239		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000311117	ENST00000446361		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000311117	ENST00000574436		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000311117	ENST00000431008		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000311117	ENST00000571987		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000311117	ENST00000420682		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000311117	ENST00000415613		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000311117	ENST00000576518		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000535772		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000344290		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000351559		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000347967		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000262410		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000340799		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-3UTR	ENST00000334914	ENST00000570299		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000334239		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-5UTR	ENST00000334914	ENST00000446361		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-intron	ENST00000334914	ENST00000574436		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-intron	ENST00000334914	ENST00000431008		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-intron	ENST00000334914	ENST00000571987		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-intron	ENST00000334914	ENST00000420682		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-intron	ENST00000334914	ENST00000415613		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5UTR-intron	ENST00000334914	ENST00000576518		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000535772		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000344290		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000351559		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000347967		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000262410		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000340799		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-3UTR	ENST00000257745	ENST00000570299		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000334239		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000257745	ENST00000446361		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000257745	ENST00000574436		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000257745	ENST00000431008		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000257745	ENST00000571987		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000257745	ENST00000420682		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000257745	ENST00000415613		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000257745	ENST00000576518		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000535772		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000344290		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000351559		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000347967		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000262410		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000340799		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-3UTR	ENST00000334877	ENST00000570299		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000334239		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000334877	ENST00000446361		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000334877	ENST00000574436		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000334877	ENST00000431008		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000334877	ENST00000571987		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000334877	ENST00000420682		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000334877	ENST00000415613		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000334877	ENST00000576518		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000535772		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000344290		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000351559		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000347967		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000262410		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000340799		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-3UTR	ENST00000476671	ENST00000570299		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000334239		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-5UTR	ENST00000476671	ENST00000446361		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000476671	ENST00000574436		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000476671	ENST00000431008		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000476671	ENST00000571987		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000476671	ENST00000420682		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000476671	ENST00000415613		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
5CDS-intron	ENST00000476671	ENST00000576518		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000535772		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000344290		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000351559		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000347967		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000262410		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000340799		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-3UTR	ENST00000480368	ENST00000570299		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000334239		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-5UTR	ENST00000480368	ENST00000446361		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-intron	ENST00000480368	ENST00000574436		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-intron	ENST00000480368	ENST00000431008		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-intron	ENST00000480368	ENST00000571987		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-intron	ENST00000480368	ENST00000420682		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-intron	ENST00000480368	ENST00000415613		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
intron-intron	ENST00000480368	ENST00000576518		TCGA	LD	STAD	TCGA-CD-8535-01A	KMT2E	chr7	104707254	+	MAPT	chr17	44039687	+
Frame-shit	ENST00000318037	ENST00000397537		TCGA	LD	STAD	TCGA-CD-8535-01A	RNF168	chr3	196229744	-	SMCO1	chr3	196235202	-
In-frame	ENST00000262461	ENST00000545074		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000262461	ENST00000540249		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000262461	ENST00000379806		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000262461	ENST00000422285		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000262461	ENST00000379805		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000262461	ENST00000379804		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000262461	ENST00000478795		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000343225	ENST00000545074		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000343225	ENST00000540249		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000343225	ENST00000379806		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000343225	ENST00000422285		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
In-frame	ENST00000343225	ENST00000379805		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000343225	ENST00000379804		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000343225	ENST00000478795		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-3CDS	ENST00000507791	ENST00000545074		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-3CDS	ENST00000507791	ENST00000540249		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-3CDS	ENST00000507791	ENST00000379806		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-3CDS	ENST00000507791	ENST00000422285		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-3CDS	ENST00000507791	ENST00000379805		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-intron	ENST00000507791	ENST00000379804		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
intron-intron	ENST00000507791	ENST00000478795		TCGA	LD	STAD	TCGA-CD-8535-01A	SLC12A2	chr5	127420402	+	PDHA1	chrX	19367430	+
5CDS-intron	ENST00000376257	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-5UTR	ENST00000376257	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376257	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-5UTR	ENST00000376255	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
5CDS-intron	ENST00000376255	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000496421	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496421	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000439112	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000439112	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000453201	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000453201	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000481311	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000481311	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000430947	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000430947	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000446042	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446042	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000474491	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000474491	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000442190	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000442190	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000449558	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000449558	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000498207	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000498207	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000400401	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000400401	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000383526	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000383526	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000496380	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000496380	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000441405	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000441405	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000428957	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000428957	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000476101	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000476101	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000446038	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000446038	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000416433	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000416433	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000467107		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000259881		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000547221		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-5UTR	ENST00000487448	ENST00000481450		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000448455		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000495389		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000467097		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000420214		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000491367		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000433334		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000471399		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000376289		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000549149		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000490397		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-intron	ENST00000487448	ENST00000441092		TCGA	LD	STAD	TCGA-CD-8535-01A	TCF19	chr6	31127484	+	PSORS1C1	chr6	31107418	+
intron-3CDS	ENST00000394735	ENST00000341695		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-3CDS	ENST00000394735	ENST00000348706		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-3CDS	ENST00000394735	ENST00000432483		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-intron	ENST00000394735	ENST00000354147		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-intron	ENST00000394735	ENST00000380004		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-intron	ENST00000394735	ENST00000357415		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-5UTR	ENST00000394735	ENST00000509426		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
intron-intron	ENST00000394735	ENST00000310267		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-3CDS	ENST00000340139	ENST00000341695		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-3CDS	ENST00000340139	ENST00000348706		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-3CDS	ENST00000340139	ENST00000432483		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000340139	ENST00000354147		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000340139	ENST00000380004		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000340139	ENST00000357415		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-5UTR	ENST00000340139	ENST00000509426		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000340139	ENST00000310267		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-3CDS	ENST00000451321	ENST00000341695		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-3CDS	ENST00000451321	ENST00000348706		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-3CDS	ENST00000451321	ENST00000432483		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000451321	ENST00000354147		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000451321	ENST00000380004		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000451321	ENST00000357415		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-5UTR	ENST00000451321	ENST00000509426		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5UTR-intron	ENST00000451321	ENST00000310267		TCGA	LD	STAD	TCGA-CD-A487-01A	INTS12	chr4	106629795	-	PPA2	chr4	106377902	-
5CDS-intron	ENST00000299563	ENST00000263681		TCGA	LD	STAD	TCGA-CD-A487-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
5CDS-intron	ENST00000299563	ENST00000527458		TCGA	LD	STAD	TCGA-CD-A487-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
5CDS-intron	ENST00000299563	ENST00000532497		TCGA	LD	STAD	TCGA-CD-A487-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
5CDS-intron	ENST00000299563	ENST00000532784		TCGA	LD	STAD	TCGA-CD-A487-01A	RNF169	chr11	74528759	+	POLD3	chr11	74379822	+
In-frame	ENST00000219343	ENST00000261778		TCGA	LD	STAD	TCGA-CD-A487-01A	SLC7A6	chr16	68309152	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000219343	ENST00000561931		TCGA	LD	STAD	TCGA-CD-A487-01A	SLC7A6	chr16	68309152	+	TANGO6	chr16	69007931	+
In-frame	ENST00000566454	ENST00000261778		TCGA	LD	STAD	TCGA-CD-A487-01A	SLC7A6	chr16	68309152	+	TANGO6	chr16	69007931	+
5CDS-intron	ENST00000566454	ENST00000561931		TCGA	LD	STAD	TCGA-CD-A487-01A	SLC7A6	chr16	68309152	+	TANGO6	chr16	69007931	+
In-frame	ENST00000219689	ENST00000309859		TCGA	LD	STAD	TCGA-CD-A487-01A	USP31	chr16	23083366	-	GGA2	chr16	23500030	-
In-frame	ENST00000219689	ENST00000567468		TCGA	LD	STAD	TCGA-CD-A487-01A	USP31	chr16	23083366	-	GGA2	chr16	23500030	-
5CDS-intron	ENST00000219689	ENST00000569182		TCGA	LD	STAD	TCGA-CD-A487-01A	USP31	chr16	23083366	-	GGA2	chr16	23500030	-
Frame-shit	ENST00000567975	ENST00000309859		TCGA	LD	STAD	TCGA-CD-A487-01A	USP31	chr16	23083366	-	GGA2	chr16	23500030	-
Frame-shit	ENST00000567975	ENST00000567468		TCGA	LD	STAD	TCGA-CD-A487-01A	USP31	chr16	23083366	-	GGA2	chr16	23500030	-
5CDS-intron	ENST00000567975	ENST00000569182		TCGA	LD	STAD	TCGA-CD-A487-01A	USP31	chr16	23083366	-	GGA2	chr16	23500030	-
Frame-shit	ENST00000537045	ENST00000353891		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000537045	ENST00000263200		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000537045	ENST00000427926		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
5CDS-intron	ENST00000537045	ENST00000442042		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000263196	ENST00000353891		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000263196	ENST00000263200		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000263196	ENST00000427926		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
5CDS-intron	ENST00000263196	ENST00000442042		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
3UTR-3CDS	ENST00000545799	ENST00000353891		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
3UTR-3CDS	ENST00000545799	ENST00000263200		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
3UTR-3CDS	ENST00000545799	ENST00000427926		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
3UTR-intron	ENST00000545799	ENST00000442042		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000473832	ENST00000353891		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000473832	ENST00000263200		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
intron-3CDS	ENST00000473832	ENST00000427926		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
intron-intron	ENST00000473832	ENST00000442042		TCGA	LD	STAD	TCGA-CD-A489-01A	DGCR2	chr22	19044499	-	CLTCL1	chr22	19263353	-
Frame-shit	ENST00000545951	ENST00000355072		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
5CDS-intron	ENST00000545951	ENST00000513806		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
Frame-shit	ENST00000382839	ENST00000355072		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
5CDS-intron	ENST00000382839	ENST00000513806		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
Frame-shit	ENST00000324666	ENST00000355072		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
5CDS-intron	ENST00000324666	ENST00000513806		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
Frame-shit	ENST00000502458	ENST00000355072		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
5CDS-intron	ENST00000502458	ENST00000513806		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
Frame-shit	ENST00000505311	ENST00000355072		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
5CDS-intron	ENST00000505311	ENST00000513806		TCGA	LD	STAD	TCGA-CD-A48A-01A	FAM193A	chr4	2702271	+	HTT	chr4	3190678	+
In-frame	ENST00000396024	ENST00000296327		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
5CDS-intron	ENST00000396024	ENST00000479732		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
In-frame	ENST00000451270	ENST00000296327		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
5CDS-intron	ENST00000451270	ENST00000479732		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
In-frame	ENST00000332680	ENST00000296327		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
5CDS-intron	ENST00000332680	ENST00000479732		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
In-frame	ENST00000421017	ENST00000296327		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
5CDS-intron	ENST00000421017	ENST00000479732		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
intron-3CDS	ENST00000557937	ENST00000296327		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
intron-intron	ENST00000557937	ENST00000479732		TCGA	LD	STAD	TCGA-CG-4437-01A	ANXA2	chr15	60653140	-	SLC51A	chr3	195959290	+
5UTR-3CDS	ENST00000379996	ENST00000337852		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
5UTR-3CDS	ENST00000379996	ENST00000376687		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
5UTR-3CDS	ENST00000379996	ENST00000453214		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
5UTR-3UTR	ENST00000379996	ENST00000482260		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3CDS	ENST00000379989	ENST00000337852		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3CDS	ENST00000379989	ENST00000376687		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3CDS	ENST00000379989	ENST00000453214		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3UTR	ENST00000379989	ENST00000482260		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3CDS	ENST00000463994	ENST00000337852		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3CDS	ENST00000463994	ENST00000376687		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3CDS	ENST00000463994	ENST00000453214		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
intron-3UTR	ENST00000463994	ENST00000482260		TCGA	LD	STAD	TCGA-CG-4437-01A	CDKL5	chrX	18443815	+	SUV39H1	chrX	48564656	+
5CDS-intron	ENST00000368911	ENST00000368882		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000368911	ENST00000368885		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000368911	ENST00000451850		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000368911	ENST00000368877		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-5UTR	ENST00000368911	ENST00000368876		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000323817	ENST00000368882		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000323817	ENST00000368885		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000323817	ENST00000451850		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-intron	ENST00000323817	ENST00000368877		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
5CDS-5UTR	ENST00000323817	ENST00000368876		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000413605	ENST00000368882		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000413605	ENST00000368885		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000413605	ENST00000451850		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000413605	ENST00000368877		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-5UTR	ENST00000413605	ENST00000368876		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000497709	ENST00000368882		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000497709	ENST00000368885		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000497709	ENST00000451850		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-intron	ENST00000497709	ENST00000368877		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
intron-5UTR	ENST00000497709	ENST00000368876		TCGA	LD	STAD	TCGA-CG-4441-01A	CDK19	chr6	111067329	-	AMD1	chr6	111210060	+
Frame-shit	ENST00000337318	ENST00000451024		TCGA	LD	STAD	TCGA-CG-4441-01A	FAM53B	chr10	126370176	-	NKX1-2	chr10	126136716	-
In-frame	ENST00000337318	ENST00000440536		TCGA	LD	STAD	TCGA-CG-4441-01A	FAM53B	chr10	126370176	-	NKX1-2	chr10	126136716	-
In-frame	ENST00000392754	ENST00000451024		TCGA	LD	STAD	TCGA-CG-4441-01A	FAM53B	chr10	126370176	-	NKX1-2	chr10	126136716	-
Frame-shit	ENST00000392754	ENST00000440536		TCGA	LD	STAD	TCGA-CG-4441-01A	FAM53B	chr10	126370176	-	NKX1-2	chr10	126136716	-
Frame-shit	ENST00000280780	ENST00000451024		TCGA	LD	STAD	TCGA-CG-4441-01A	FAM53B	chr10	126370176	-	NKX1-2	chr10	126136716	-
In-frame	ENST00000280780	ENST00000440536		TCGA	LD	STAD	TCGA-CG-4441-01A	FAM53B	chr10	126370176	-	NKX1-2	chr10	126136716	-
intron-3CDS	ENST00000503278	ENST00000448507		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
intron-3CDS	ENST00000503278	ENST00000409757		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
intron-3CDS	ENST00000503278	ENST00000410031		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
intron-3CDS	ENST00000503278	ENST00000451522		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
intron-intron	ENST00000503278	ENST00000446947		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000425103	ENST00000448507		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000425103	ENST00000409757		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000425103	ENST00000410031		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000425103	ENST00000451522		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
5CDS-intron	ENST00000425103	ENST00000446947		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000307659	ENST00000448507		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000307659	ENST00000409757		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000307659	ENST00000410031		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
In-frame	ENST00000307659	ENST00000451522		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
5CDS-intron	ENST00000307659	ENST00000446947		TCGA	LD	STAD	TCGA-CG-4441-01A	KIAA0232	chr4	6843931	+	TBC1D14	chr4	6995911	+
5UTR-3CDS	ENST00000401998	ENST00000394903		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000401998	ENST00000338820		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000401998	ENST00000444643		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-intron	ENST00000401998	ENST00000461919		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000361114	ENST00000394903		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000361114	ENST00000338820		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000361114	ENST00000444643		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-intron	ENST00000361114	ENST00000461919		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000398761	ENST00000394903		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000398761	ENST00000338820		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000398761	ENST00000444643		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-intron	ENST00000398761	ENST00000461919		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000418483	ENST00000394903		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000418483	ENST00000338820		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000418483	ENST00000444643		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-intron	ENST00000418483	ENST00000461919		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000398763	ENST00000394903		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000398763	ENST00000338820		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-3CDS	ENST00000398763	ENST00000444643		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
intron-intron	ENST00000398763	ENST00000461919		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000604025	ENST00000394903		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000604025	ENST00000338820		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000604025	ENST00000444643		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-intron	ENST00000604025	ENST00000461919		TCGA	LD	STAD	TCGA-CG-4441-01A	MICU1	chr10	74385768	-	DNAJB12	chr10	74104885	-
5UTR-3CDS	ENST00000405995	ENST00000423007		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000404875		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000341012		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000372228		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000419118		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000402686		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000541219		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-5UTR	ENST00000405995	ENST00000354713		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
5UTR-intron	ENST00000405995	ENST00000485278		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-3CDS	ENST00000357304	ENST00000423007		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000404875		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000341012		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000372228		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000419118		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000402686		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000541219		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000357304	ENST00000354713		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-intron	ENST00000357304	ENST00000485278		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-3CDS	ENST00000458550	ENST00000423007		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000404875		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000341012		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000372228		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000419118		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000402686		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000541219		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000458550	ENST00000354713		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-intron	ENST00000458550	ENST00000485278		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-3CDS	ENST00000372249	ENST00000423007		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000404875		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000341012		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000372228		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000419118		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000402686		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000541219		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000372249	ENST00000354713		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-intron	ENST00000372249	ENST00000485278		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-3CDS	ENST00000465931	ENST00000423007		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000404875		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000341012		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000372228		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000419118		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000402686		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000541219		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-5UTR	ENST00000465931	ENST00000354713		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
intron-intron	ENST00000465931	ENST00000485278		TCGA	LD	STAD	TCGA-CG-4441-01A	PRRC2B	chr9	134269650	+	POMT1	chr9	134381790	+
In-frame	ENST00000396591	ENST00000256441		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
5CDS-intron	ENST00000396591	ENST00000507022		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
5CDS-5UTR	ENST00000396591	ENST00000602380		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
5CDS-5UTR	ENST00000396591	ENST00000512880		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-3CDS	ENST00000380860	ENST00000256441		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-intron	ENST00000380860	ENST00000507022		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-5UTR	ENST00000380860	ENST00000602380		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-5UTR	ENST00000380860	ENST00000512880		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-3CDS	ENST00000502979	ENST00000256441		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-intron	ENST00000502979	ENST00000507022		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-5UTR	ENST00000502979	ENST00000602380		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
intron-5UTR	ENST00000502979	ENST00000512880		TCGA	LD	STAD	TCGA-CG-4441-01A	SLC30A5	chr5	68411234	+	MRPS36	chr5	68522165	+
5UTR-3CDS	ENST00000398958	ENST00000390547		TCGA	LD	STAD	TCGA-CG-5716-01A	RCC1	chr1	28832596	+	IGHA1	chr14	106173768	-
5UTR-3CDS	ENST00000373833	ENST00000390547		TCGA	LD	STAD	TCGA-CG-5716-01A	RCC1	chr1	28832596	+	IGHA1	chr14	106173768	-
intron-3CDS	ENST00000373832	ENST00000390547		TCGA	LD	STAD	TCGA-CG-5716-01A	RCC1	chr1	28832596	+	IGHA1	chr14	106173768	-
intron-3CDS	ENST00000373831	ENST00000390547		TCGA	LD	STAD	TCGA-CG-5716-01A	RCC1	chr1	28832596	+	IGHA1	chr14	106173768	-
intron-3CDS	ENST00000429051	ENST00000390547		TCGA	LD	STAD	TCGA-CG-5716-01A	RCC1	chr1	28832596	+	IGHA1	chr14	106173768	-
intron-3CDS	ENST00000364938	ENST00000390547		TCGA	LD	STAD	TCGA-CG-5716-01A	SNHG3	chr1	28832596	+	IGHA1	chr14	106173768	-
5UTR-3CDS	ENST00000327492	ENST00000355630		TCGA	LD	STAD	TCGA-CG-5717-01A	TOB2	chr22	41842383	-	MKL1	chr22	40807911	-
5UTR-3CDS	ENST00000327492	ENST00000396617		TCGA	LD	STAD	TCGA-CG-5717-01A	TOB2	chr22	41842383	-	MKL1	chr22	40807911	-
5UTR-3CDS	ENST00000327492	ENST00000402042		TCGA	LD	STAD	TCGA-CG-5717-01A	TOB2	chr22	41842383	-	MKL1	chr22	40807911	-
5UTR-intron	ENST00000327492	ENST00000466278		TCGA	LD	STAD	TCGA-CG-5717-01A	TOB2	chr22	41842383	-	MKL1	chr22	40807911	-
5UTR-intron	ENST00000327492	ENST00000407029		TCGA	LD	STAD	TCGA-CG-5717-01A	TOB2	chr22	41842383	-	MKL1	chr22	40807911	-
5UTR-intron	ENST00000327492	ENST00000402630		TCGA	LD	STAD	TCGA-CG-5717-01A	TOB2	chr22	41842383	-	MKL1	chr22	40807911	-
Frame-shit	ENST00000253039	ENST00000379341		TCGA	LD	STAD	TCGA-CG-5718-01A	EIF2S3	chrX	24078299	+	PRDX4	chrX	23704402	+
5CDS-intron	ENST00000253039	ENST00000495599		TCGA	LD	STAD	TCGA-CG-5718-01A	EIF2S3	chrX	24078299	+	PRDX4	chrX	23704402	+
5CDS-intron	ENST00000253039	ENST00000379331		TCGA	LD	STAD	TCGA-CG-5718-01A	EIF2S3	chrX	24078299	+	PRDX4	chrX	23704402	+
intron-3CDS	ENST00000460032	ENST00000379341		TCGA	LD	STAD	TCGA-CG-5718-01A	EIF2S3	chrX	24078299	+	PRDX4	chrX	23704402	+
intron-intron	ENST00000460032	ENST00000495599		TCGA	LD	STAD	TCGA-CG-5718-01A	EIF2S3	chrX	24078299	+	PRDX4	chrX	23704402	+
intron-intron	ENST00000460032	ENST00000379331		TCGA	LD	STAD	TCGA-CG-5718-01A	EIF2S3	chrX	24078299	+	PRDX4	chrX	23704402	+
intron-3CDS	ENST00000468758	ENST00000329321		TCGA	LD	STAD	TCGA-CG-5718-01A	MGAT5	chr2	135186010	+	GPR39	chr2	133402674	+
intron-3UTR	ENST00000468758	ENST00000470071		TCGA	LD	STAD	TCGA-CG-5718-01A	MGAT5	chr2	135186010	+	GPR39	chr2	133402674	+
Frame-shit	ENST00000409645	ENST00000329321		TCGA	LD	STAD	TCGA-CG-5718-01A	MGAT5	chr2	135186010	+	GPR39	chr2	133402674	+
5CDS-3UTR	ENST00000409645	ENST00000470071		TCGA	LD	STAD	TCGA-CG-5718-01A	MGAT5	chr2	135186010	+	GPR39	chr2	133402674	+
Frame-shit	ENST00000281923	ENST00000329321		TCGA	LD	STAD	TCGA-CG-5718-01A	MGAT5	chr2	135186010	+	GPR39	chr2	133402674	+
5CDS-3UTR	ENST00000281923	ENST00000470071		TCGA	LD	STAD	TCGA-CG-5718-01A	MGAT5	chr2	135186010	+	GPR39	chr2	133402674	+
In-frame	ENST00000268989	ENST00000217185		TCGA	LD	STAD	TCGA-CG-5718-01A	SGSM2	chr17	2241039	+	PTK6	chr20	62165057	-
In-frame	ENST00000268989	ENST00000542869		TCGA	LD	STAD	TCGA-CG-5718-01A	SGSM2	chr17	2241039	+	PTK6	chr20	62165057	-
In-frame	ENST00000426855	ENST00000217185		TCGA	LD	STAD	TCGA-CG-5718-01A	SGSM2	chr17	2241039	+	PTK6	chr20	62165057	-
In-frame	ENST00000426855	ENST00000542869		TCGA	LD	STAD	TCGA-CG-5718-01A	SGSM2	chr17	2241039	+	PTK6	chr20	62165057	-
In-frame	ENST00000574563	ENST00000217185		TCGA	LD	STAD	TCGA-CG-5718-01A	SGSM2	chr17	2241039	+	PTK6	chr20	62165057	-
In-frame	ENST00000574563	ENST00000542869		TCGA	LD	STAD	TCGA-CG-5718-01A	SGSM2	chr17	2241039	+	PTK6	chr20	62165057	-
5CDS-3UTR	ENST00000269033	ENST00000583215		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-intron	ENST00000269033	ENST00000323372		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-3UTR	ENST00000540801	ENST00000583215		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-intron	ENST00000540801	ENST00000323372		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
intron-3UTR	ENST00000324677	ENST00000583215		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
intron-intron	ENST00000324677	ENST00000323372		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-3UTR	ENST00000582084	ENST00000583215		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-intron	ENST00000582084	ENST00000323372		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-3UTR	ENST00000590153	ENST00000583215		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-intron	ENST00000590153	ENST00000323372		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-3UTR	ENST00000579954	ENST00000583215		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5CDS-intron	ENST00000579954	ENST00000323372		TCGA	LD	STAD	TCGA-CG-5718-01A	SSH2	chr17	28256956	-	PIPOX	chr17	27280382	+
5UTR-3CDS	ENST00000358781	ENST00000375980		TCGA	LD	STAD	TCGA-CG-5719-01A	FAM3D	chr3	58652303	-	EFHD2	chr1	15752367	+
intron-5UTR	ENST00000445937	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000445937	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000445937	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000445937	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000531443	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000531443	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000531443	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000531443	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000517566	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000517566	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000517566	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000517566	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000452423	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000452423	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000452423	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000452423	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000442977	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000442977	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000442977	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
5CDS-intron	ENST00000442977	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521963	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521963	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521963	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000521963	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000312046	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000312046	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000312046	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000312046	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000449762	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000449762	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000449762	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000449762	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000297447	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000297447	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000297447	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000297447	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521592	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521592	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000521592	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000521592	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000497705	ENST00000501396		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000497705	ENST00000502082		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-5UTR	ENST00000497705	ENST00000523825		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
intron-intron	ENST00000497705	ENST00000502056		TCGA	LD	STAD	TCGA-CG-5724-01A	OXR1	chr8	107460276	+	CASC8	chr8	128302305	-
5CDS-5UTR	ENST00000370551	ENST00000369796		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-5UTR	ENST00000370551	ENST00000369795		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-5UTR	ENST00000370551	ENST00000369794		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-intron	ENST00000370551	ENST00000461054		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-5UTR	ENST00000370550	ENST00000369796		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-5UTR	ENST00000370550	ENST00000369795		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-5UTR	ENST00000370550	ENST00000369794		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
5CDS-intron	ENST00000370550	ENST00000461054		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
intron-5UTR	ENST00000356813	ENST00000369796		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
intron-5UTR	ENST00000356813	ENST00000369795		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
intron-5UTR	ENST00000356813	ENST00000369794		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
intron-intron	ENST00000356813	ENST00000461054		TCGA	LD	STAD	TCGA-CG-5725-01A	HS2ST1	chr1	87380843	+	STRIP1	chr1	110580513	+
Frame-shit	ENST00000319481	ENST00000356166		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-intron	ENST00000319481	ENST00000568722		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-intron	ENST00000319481	ENST00000482749		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-5UTR	ENST00000319481	ENST00000395073		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-5UTR	ENST00000319481	ENST00000287468		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-3CDS	ENST00000399443	ENST00000356166		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-intron	ENST00000399443	ENST00000568722		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-intron	ENST00000399443	ENST00000482749		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-5UTR	ENST00000399443	ENST00000395073		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-5UTR	ENST00000399443	ENST00000287468		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-3CDS	ENST00000357041	ENST00000356166		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-intron	ENST00000357041	ENST00000568722		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-intron	ENST00000357041	ENST00000482749		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-5UTR	ENST00000357041	ENST00000395073		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
intron-5UTR	ENST00000357041	ENST00000287468		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
In-frame	ENST00000399441	ENST00000356166		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-intron	ENST00000399441	ENST00000568722		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-intron	ENST00000399441	ENST00000482749		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-5UTR	ENST00000399441	ENST00000395073		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5CDS-5UTR	ENST00000399441	ENST00000287468		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5UTR-3CDS	ENST00000582618	ENST00000356166		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5UTR-intron	ENST00000582618	ENST00000568722		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5UTR-intron	ENST00000582618	ENST00000482749		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5UTR-5UTR	ENST00000582618	ENST00000395073		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
5UTR-5UTR	ENST00000582618	ENST00000287468		TCGA	LD	STAD	TCGA-CG-5725-01A	OSBPL1A	chr18	21957377	-	FBRS	chr16	30676036	+
In-frame	ENST00000413465	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
In-frame	ENST00000359597	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
Frame-shit	ENST00000269305	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
Frame-shit	ENST00000455263	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
Frame-shit	ENST00000420246	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
Frame-shit	ENST00000445888	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
intron-3CDS	ENST00000574684	ENST00000412468		TCGA	LD	STAD	TCGA-CG-5725-01A	TP53	chr17	7578177	-	SLC35G6	chr17	7385307	+
In-frame	ENST00000283033	ENST00000434724		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000283033	ENST00000439887		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000283033	ENST00000563468		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000283033	ENST00000420576		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
5CDS-intron	ENST00000283033	ENST00000564790		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000356957	ENST00000434724		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000356957	ENST00000439887		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000356957	ENST00000563468		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
In-frame	ENST00000356957	ENST00000420576		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
5CDS-intron	ENST00000356957	ENST00000564790		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
intron-3CDS	ENST00000570917	ENST00000434724		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
intron-3CDS	ENST00000570917	ENST00000439887		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
intron-3CDS	ENST00000570917	ENST00000563468		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
intron-3CDS	ENST00000570917	ENST00000420576		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
intron-intron	ENST00000570917	ENST00000564790		TCGA	LD	STAD	TCGA-CG-5725-01A	TXNDC11	chr16	11824501	-	GSPT1	chr16	11971437	-
Frame-shit	ENST00000355237	ENST00000361732		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000355237	ENST00000509734		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000355237	ENST00000354868		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000355237	ENST00000521422		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000504177		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000354312		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000345306		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000305138		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000282891		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000358030		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000355237	ENST00000380774		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000396442	ENST00000361732		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000396442	ENST00000509734		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000396442	ENST00000354868		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000396442	ENST00000521422		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000504177		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000354312		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000345306		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000305138		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000282891		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000358030		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000396442	ENST00000380774		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000380766	ENST00000361732		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000380766	ENST00000509734		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000380766	ENST00000354868		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
Frame-shit	ENST00000380766	ENST00000521422		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000504177		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000354312		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000345306		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000305138		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000282891		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000358030		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5CDS-3UTR	ENST00000380766	ENST00000380774		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000538151	ENST00000361732		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000538151	ENST00000509734		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000538151	ENST00000354868		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000538151	ENST00000521422		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000504177		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000354312		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000345306		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000305138		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000282891		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000358030		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000538151	ENST00000380774		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000542132	ENST00000361732		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000542132	ENST00000509734		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000542132	ENST00000354868		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3CDS	ENST00000542132	ENST00000521422		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000504177		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000354312		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000345306		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000305138		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000282891		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000358030		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
5UTR-3UTR	ENST00000542132	ENST00000380774		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3CDS	ENST00000514370	ENST00000361732		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3CDS	ENST00000514370	ENST00000509734		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3CDS	ENST00000514370	ENST00000354868		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3CDS	ENST00000514370	ENST00000521422		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000504177		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000354312		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000345306		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000305138		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000282891		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000358030		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3UTR	ENST00000514370	ENST00000380774		TCGA	LD	STAD	TCGA-CG-5732-01A	OCLN	chr5	68800121	+	RAD17	chr5	68709858	+
intron-3CDS	ENST00000309060	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000309060	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000309060	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000540170	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000540170	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000540170	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000559234	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000559234	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000559234	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
5UTR-3CDS	ENST00000557816	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
5UTR-3CDS	ENST00000557816	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
5UTR-intron	ENST00000557816	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000558993	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000558993	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000558993	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000544979	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000544979	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000544979	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
5UTR-3CDS	ENST00000560361	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
5UTR-3CDS	ENST00000560361	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
5UTR-intron	ENST00000560361	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000432768	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000432768	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000432768	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000561291	ENST00000373458		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-3CDS	ENST00000561291	ENST00000373461		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
intron-intron	ENST00000561291	ENST00000373459		TCGA	LD	STAD	TCGA-CG-5732-01A	ZHX3	chr20	39867328	-	VSTM2L	chr20	36560037	+
Frame-shit	ENST00000267328	ENST00000356711		TCGA	LD	STAD	TCGA-D7-6518-01A	RAB20	chr13	111213695	-	MYO16	chr13	109610036	+
Frame-shit	ENST00000267328	ENST00000251041		TCGA	LD	STAD	TCGA-D7-6518-01A	RAB20	chr13	111213695	-	MYO16	chr13	109610036	+
Frame-shit	ENST00000267328	ENST00000357550		TCGA	LD	STAD	TCGA-D7-6518-01A	RAB20	chr13	111213695	-	MYO16	chr13	109610036	+
Frame-shit	ENST00000267328	ENST00000457511		TCGA	LD	STAD	TCGA-D7-6518-01A	RAB20	chr13	111213695	-	MYO16	chr13	109610036	+
5CDS-intron	ENST00000267328	ENST00000467639		TCGA	LD	STAD	TCGA-D7-6518-01A	RAB20	chr13	111213695	-	MYO16	chr13	109610036	+
Frame-shit	ENST00000367094	ENST00000448612		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
Frame-shit	ENST00000367094	ENST00000423258		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
Frame-shit	ENST00000367094	ENST00000333572		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
5CDS-intron	ENST00000367094	ENST00000546525		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
5CDS-intron	ENST00000367094	ENST00000420344		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
Frame-shit	ENST00000367097	ENST00000448612		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
Frame-shit	ENST00000367097	ENST00000423258		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
Frame-shit	ENST00000367097	ENST00000333572		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
5CDS-intron	ENST00000367097	ENST00000546525		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
5CDS-intron	ENST00000367097	ENST00000420344		TCGA	LD	STAD	TCGA-D7-6520-01A	TULP4	chr6	158882761	+	WDR27	chr6	169857729	-
In-frame	ENST00000403050	ENST00000262041		TCGA	LD	STAD	TCGA-D7-6521-01A	PHF14	chr7	11030474	+	MEOX2	chr7	15652236	-
In-frame	ENST00000445996	ENST00000262041		TCGA	LD	STAD	TCGA-D7-6521-01A	PHF14	chr7	11030474	+	MEOX2	chr7	15652236	-
intron-3CDS	ENST00000469407	ENST00000262041		TCGA	LD	STAD	TCGA-D7-6521-01A	PHF14	chr7	11030474	+	MEOX2	chr7	15652236	-
3UTR-3CDS	ENST00000395326	ENST00000343529		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000395326	ENST00000428762		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000395326	ENST00000424685		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-intron	ENST00000395326	ENST00000473945		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000431089	ENST00000343529		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000431089	ENST00000428762		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000431089	ENST00000424685		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-intron	ENST00000431089	ENST00000473945		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000398684	ENST00000343529		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000398684	ENST00000428762		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000398684	ENST00000424685		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-intron	ENST00000398684	ENST00000473945		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000338592	ENST00000343529		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000338592	ENST00000428762		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000338592	ENST00000424685		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-intron	ENST00000338592	ENST00000473945		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000415001	ENST00000343529		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000415001	ENST00000428762		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000415001	ENST00000424685		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-intron	ENST00000415001	ENST00000473945		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000492264	ENST00000343529		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000492264	ENST00000428762		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-3CDS	ENST00000492264	ENST00000424685		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
3UTR-intron	ENST00000492264	ENST00000473945		TCGA	LD	STAD	TCGA-D7-6526-01A	CRCP	chr7	65617461	+	RELN	chr7	103163978	-
Frame-shit	ENST00000359867	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000359867	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000359867	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5CDS-5UTR	ENST00000359867	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000396832	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000396832	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000396832	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5CDS-5UTR	ENST00000396832	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000400206	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000400206	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000400206	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5CDS-5UTR	ENST00000400206	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000403904	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000403904	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000403904	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5CDS-5UTR	ENST00000403904	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000413574	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000413574	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000413574	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5CDS-5UTR	ENST00000413574	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
Frame-shit	ENST00000405675	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000405675	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
In-frame	ENST00000405675	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5CDS-5UTR	ENST00000405675	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
intron-3CDS	ENST00000498529	ENST00000535113		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
intron-3CDS	ENST00000498529	ENST00000355830		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
intron-3CDS	ENST00000498529	ENST00000406767		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
intron-5UTR	ENST00000498529	ENST00000540952		TCGA	LD	STAD	TCGA-D7-6526-01A	CSNK1E	chr22	38710087	-	FAM227A	chr22	38982204	-
5UTR-3CDS	ENST00000321356	ENST00000234296		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
5UTR-intron	ENST00000321356	ENST00000467605		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
intron-3CDS	ENST00000409769	ENST00000234296		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
intron-intron	ENST00000409769	ENST00000467605		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
intron-3CDS	ENST00000434813	ENST00000234296		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
intron-intron	ENST00000434813	ENST00000467605		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
5UTR-3CDS	ENST00000492793	ENST00000234296		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
5UTR-intron	ENST00000492793	ENST00000467605		TCGA	LD	STAD	TCGA-D7-6527-01A	CLK1	chr2	201729287	-	ORC2	chr2	201778715	-
5CDS-3UTR	ENST00000261798	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000261798	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000377843	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000377843	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5UTR-3UTR	ENST00000515435	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5UTR-3UTR	ENST00000515435	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5UTR-3UTR	ENST00000504676	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5UTR-3UTR	ENST00000504676	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000515768	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000515768	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
intron-3UTR	ENST00000606719	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
intron-3UTR	ENST00000606719	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
intron-3UTR	ENST00000606299	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
intron-3UTR	ENST00000606299	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000515748	ENST00000578382		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-3UTR	ENST00000515748	ENST00000583560		TCGA	LD	STAD	TCGA-D7-6527-01A	CSNK1A1	chr5	148929638	-	MYO15B	chr17	73606247	+
5CDS-intron	ENST00000249270	ENST00000494118		TCGA	LD	STAD	TCGA-D7-6527-01A	DNAJC2	chr7	102978183	-	ZNF385D	chr3	21706520	-
5CDS-intron	ENST00000249270	ENST00000281523		TCGA	LD	STAD	TCGA-D7-6527-01A	DNAJC2	chr7	102978183	-	ZNF385D	chr3	21706520	-
5CDS-intron	ENST00000379263	ENST00000494118		TCGA	LD	STAD	TCGA-D7-6527-01A	DNAJC2	chr7	102978183	-	ZNF385D	chr3	21706520	-
5CDS-intron	ENST00000379263	ENST00000281523		TCGA	LD	STAD	TCGA-D7-6527-01A	DNAJC2	chr7	102978183	-	ZNF385D	chr3	21706520	-
intron-intron	ENST00000412522	ENST00000494118		TCGA	LD	STAD	TCGA-D7-6527-01A	DNAJC2	chr7	102978183	-	ZNF385D	chr3	21706520	-
intron-intron	ENST00000412522	ENST00000281523		TCGA	LD	STAD	TCGA-D7-6527-01A	DNAJC2	chr7	102978183	-	ZNF385D	chr3	21706520	-
intron-3CDS	ENST00000444716	ENST00000598188		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000444716	ENST00000359435		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000444716	ENST00000447614		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000444716	ENST00000601043		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3UTR	ENST00000444716	ENST00000448635		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-intron	ENST00000444716	ENST00000595632		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000302541	ENST00000598188		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000302541	ENST00000359435		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000302541	ENST00000447614		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000302541	ENST00000601043		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3UTR	ENST00000302541	ENST00000448635		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-intron	ENST00000302541	ENST00000595632		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000425621	ENST00000598188		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000425621	ENST00000359435		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000425621	ENST00000447614		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000425621	ENST00000601043		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3UTR	ENST00000425621	ENST00000448635		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-intron	ENST00000425621	ENST00000595632		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000396217	ENST00000598188		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000396217	ENST00000359435		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000396217	ENST00000447614		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000396217	ENST00000601043		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3UTR	ENST00000396217	ENST00000448635		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-intron	ENST00000396217	ENST00000595632		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000459828	ENST00000598188		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000459828	ENST00000359435		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000459828	ENST00000447614		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000459828	ENST00000601043		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3UTR	ENST00000459828	ENST00000448635		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-intron	ENST00000459828	ENST00000595632		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000539167	ENST00000598188		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000539167	ENST00000359435		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000539167	ENST00000447614		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3CDS	ENST00000539167	ENST00000601043		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-3UTR	ENST00000539167	ENST00000448635		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
intron-intron	ENST00000539167	ENST00000595632		TCGA	LD	STAD	TCGA-D7-6527-01A	MYRIP	chr3	39851407	+	BABAM1	chr19	17384713	+
5UTR-3CDS	ENST00000356309	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000356309	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000356309	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000356309	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000409423	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000409423	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000409423	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000409423	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000275830	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000275830	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-intron	ENST00000275830	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-intron	ENST00000275830	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000409339	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000409339	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000409339	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000409339	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000449727	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-3CDS	ENST00000449727	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000449727	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5UTR-intron	ENST00000449727	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000541468	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000541468	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-intron	ENST00000541468	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-intron	ENST00000541468	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000479022	ENST00000297431		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-3CDS	ENST00000479022	ENST00000545943		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-intron	ENST00000479022	ENST00000447452		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
intron-intron	ENST00000479022	ENST00000485726		TCGA	LD	STAD	TCGA-D7-6527-01A	NCAPG2	chr7	158497415	-	ORC5	chr7	103777340	-
5CDS-5UTR	ENST00000221265	ENST00000307630		TCGA	LD	STAD	TCGA-D7-6527-01A	PAF1	chr19	39880709	-	YWHAG	chr7	75988141	-
5CDS-5UTR	ENST00000595564	ENST00000307630		TCGA	LD	STAD	TCGA-D7-6527-01A	PAF1	chr19	39880709	-	YWHAG	chr7	75988141	-
5CDS-5UTR	ENST00000221266	ENST00000307630		TCGA	LD	STAD	TCGA-D7-6527-01A	PAF1	chr19	39880709	-	YWHAG	chr7	75988141	-
In-frame	ENST00000307296	ENST00000282538		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
5CDS-5UTR	ENST00000307296	ENST00000498387		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
5CDS-intron	ENST00000307296	ENST00000454381		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
In-frame	ENST00000457054	ENST00000282538		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
5CDS-5UTR	ENST00000457054	ENST00000498387		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
5CDS-intron	ENST00000457054	ENST00000454381		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
intron-3CDS	ENST00000498147	ENST00000282538		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
intron-5UTR	ENST00000498147	ENST00000498387		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
intron-intron	ENST00000498147	ENST00000454381		TCGA	LD	STAD	TCGA-D7-6527-01A	PDCD6IP	chr3	33870461	+	GADL1	chr3	30769907	-
Frame-shit	ENST00000371457	ENST00000342129		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000371457	ENST00000340951		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000371457	ENST00000479452		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000371457	ENST00000475006		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000371457	ENST00000465160		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
In-frame	ENST00000277531	ENST00000342129		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
In-frame	ENST00000277531	ENST00000340951		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000277531	ENST00000479452		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000277531	ENST00000475006		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000277531	ENST00000465160		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
In-frame	ENST00000406427	ENST00000342129		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
In-frame	ENST00000406427	ENST00000340951		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000406427	ENST00000479452		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000406427	ENST00000475006		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
5CDS-intron	ENST00000406427	ENST00000465160		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
intron-3CDS	ENST00000492278	ENST00000342129		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
intron-3CDS	ENST00000492278	ENST00000340951		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
intron-intron	ENST00000492278	ENST00000479452		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
intron-intron	ENST00000492278	ENST00000475006		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
intron-intron	ENST00000492278	ENST00000465160		TCGA	LD	STAD	TCGA-D7-6527-01A	PNPLA7	chr9	140391639	-	EXD3	chr9	140218595	-
Frame-shit	ENST00000292614	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	POLR2J	chr7	102119258	-	DNAJC2	chr7	102965009	-
Frame-shit	ENST00000292614	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	POLR2J	chr7	102119258	-	DNAJC2	chr7	102965009	-
5CDS-intron	ENST00000292614	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	POLR2J	chr7	102119258	-	DNAJC2	chr7	102965009	-
Frame-shit	ENST00000393794	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	POLR2J	chr7	102119258	-	DNAJC2	chr7	102965009	-
Frame-shit	ENST00000393794	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	POLR2J	chr7	102119258	-	DNAJC2	chr7	102965009	-
5CDS-intron	ENST00000393794	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	POLR2J	chr7	102119258	-	DNAJC2	chr7	102965009	-
In-frame	ENST00000360453	ENST00000451292		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000377797		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000445265		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000323668		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000439160		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000394269		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000504761		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000360453	ENST00000513346		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
5CDS-intron	ENST00000360453	ENST00000506063		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000451292		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000377797		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000445265		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000323668		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000439160		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000394269		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000504761		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000394320	ENST00000513346		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
5CDS-intron	ENST00000394320	ENST00000506063		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000451292		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000377797		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000445265		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000323668		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000439160		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000394269		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000504761		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-3CDS	ENST00000461780	ENST00000513346		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
3UTR-intron	ENST00000461780	ENST00000506063		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000451292		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000377797		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000445265		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000323668		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000439160		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000394269		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000504761		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
In-frame	ENST00000309241	ENST00000513346		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
5CDS-intron	ENST00000309241	ENST00000506063		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000451292		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000377797		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000445265		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000323668		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000439160		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000394269		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000504761		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-3CDS	ENST00000403750	ENST00000513346		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
intron-intron	ENST00000403750	ENST00000506063		TCGA	LD	STAD	TCGA-D7-6527-01A	PPARGC1B	chr5	149109983	+	TCOF1	chr5	149740719	+
Frame-shit	ENST00000389413	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000389413	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
5CDS-intron	ENST00000389413	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000409483	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000409483	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
5CDS-intron	ENST00000409483	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000389416	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000389416	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
5CDS-intron	ENST00000389416	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000389418	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000389418	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
5CDS-intron	ENST00000389418	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
intron-3CDS	ENST00000404321	ENST00000249270		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
intron-3CDS	ENST00000404321	ENST00000379263		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
intron-intron	ENST00000404321	ENST00000412522		TCGA	LD	STAD	TCGA-D7-6527-01A	PTPRN2	chr7	158380250	-	DNAJC2	chr7	102953548	-
Frame-shit	ENST00000424085	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000257075	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000373747	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373747	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373747	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373747	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000426105	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000426105	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000426105	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000426105	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000440538	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000440538	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000440538	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000440538	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000373741	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373741	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373741	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373741	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000423018	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000423018	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000423018	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000423018	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000373742	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5UTR-3CDS	ENST00000490546	ENST00000373736		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5UTR-intron	ENST00000490546	ENST00000263693		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5UTR-intron	ENST00000490546	ENST00000528449		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
5UTR-intron	ENST00000490546	ENST00000398657		TCGA	LD	STAD	TCGA-D7-6527-01A	PUM1	chr1	31447498	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000396526	ENST00000358716		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
In-frame	ENST00000396526	ENST00000382422		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
In-frame	ENST00000396526	ENST00000360310		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
5CDS-intron	ENST00000396526	ENST00000553853		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000396534	ENST00000358716		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000396534	ENST00000382422		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000396534	ENST00000360310		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
5CDS-intron	ENST00000396534	ENST00000553853		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
In-frame	ENST00000362031	ENST00000358716		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
In-frame	ENST00000362031	ENST00000382422		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
In-frame	ENST00000362031	ENST00000360310		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
5CDS-intron	ENST00000362031	ENST00000553853		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000355110	ENST00000358716		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000355110	ENST00000382422		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000355110	ENST00000360310		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
5CDS-intron	ENST00000355110	ENST00000553853		TCGA	LD	STAD	TCGA-D7-6527-01A	SNX6	chr14	35062251	-	BAZ1A	chr14	35243696	-
Frame-shit	ENST00000588240	ENST00000379162		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
Frame-shit	ENST00000588240	ENST00000441463		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
5CDS-intron	ENST00000588240	ENST00000493226		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
5UTR-3CDS	ENST00000592237	ENST00000379162		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
5UTR-3CDS	ENST00000592237	ENST00000441463		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
5UTR-intron	ENST00000592237	ENST00000493226		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
Frame-shit	ENST00000311979	ENST00000379162		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
Frame-shit	ENST00000311979	ENST00000441463		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
5CDS-intron	ENST00000311979	ENST00000493226		TCGA	LD	STAD	TCGA-D7-6527-01A	TAF15	chr17	34136580	+	PDK3	chrX	24549774	+
5CDS-5UTR	ENST00000283629	ENST00000593149		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-5UTR	ENST00000283629	ENST00000248342		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-3UTR	ENST00000283629	ENST00000593062		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283629	ENST00000538434		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283629	ENST00000588934		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283629	ENST00000545173		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283629	ENST00000592558		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-5UTR	ENST00000447368	ENST00000593149		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-5UTR	ENST00000447368	ENST00000248342		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-3UTR	ENST00000447368	ENST00000593062		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000447368	ENST00000538434		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000447368	ENST00000588934		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000447368	ENST00000545173		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000447368	ENST00000592558		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-5UTR	ENST00000283628	ENST00000593149		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-5UTR	ENST00000283628	ENST00000248342		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-3UTR	ENST00000283628	ENST00000593062		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283628	ENST00000538434		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283628	ENST00000588934		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283628	ENST00000545173		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
5CDS-intron	ENST00000283628	ENST00000592558		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-5UTR	ENST00000486388	ENST00000593149		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-5UTR	ENST00000486388	ENST00000248342		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-3UTR	ENST00000486388	ENST00000593062		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-intron	ENST00000486388	ENST00000538434		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-intron	ENST00000486388	ENST00000588934		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-intron	ENST00000486388	ENST00000545173		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
intron-intron	ENST00000486388	ENST00000592558		TCGA	LD	STAD	TCGA-D7-6527-01A	UBP1	chr3	33481228	-	EIF3K	chr19	39110977	+
Frame-shit	ENST00000594947	ENST00000356401		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
Frame-shit	ENST00000594947	ENST00000449376		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
5CDS-3UTR	ENST00000594947	ENST00000490095		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
3UTR-3CDS	ENST00000596471	ENST00000356401		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
3UTR-3CDS	ENST00000596471	ENST00000449376		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
3UTR-3UTR	ENST00000596471	ENST00000490095		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
Frame-shit	ENST00000600162	ENST00000356401		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
Frame-shit	ENST00000600162	ENST00000449376		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
5CDS-3UTR	ENST00000600162	ENST00000490095		TCGA	LD	STAD	TCGA-D7-6527-01A	ZNF257	chr19	22235437	+	ARIH2	chr3	49016915	+
In-frame	ENST00000545260	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000545260	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545260	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545260	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545260	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545260	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000545693	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000545693	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545693	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545693	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545693	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000545693	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000350537	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000350537	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000350537	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000350537	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000350537	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000350537	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000346874	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000346874	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000346874	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000346874	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000346874	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000346874	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374789	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374789	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374789	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374789	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374789	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374789	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374790	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374790	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374790	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374790	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374790	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374790	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374794	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374794	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374794	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374794	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374794	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374794	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374788	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374788	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374788	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374788	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374788	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374788	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-3CDS	ENST00000466092	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-3CDS	ENST00000466092	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000466092	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000466092	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000466092	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000466092	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374776	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374776	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374776	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374776	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374776	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374776	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000340077	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000340077	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000340077	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000340077	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000340077	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000340077	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-3CDS	ENST00000544292	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-3CDS	ENST00000544292	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000544292	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000544292	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000544292	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000544292	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374773	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
In-frame	ENST00000374773	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374773	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374773	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374773	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
5CDS-intron	ENST00000374773	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-3CDS	ENST00000374768	ENST00000311380		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-3CDS	ENST00000374768	ENST00000375250		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000374768	ENST00000492028		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000374768	ENST00000344936		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000374768	ENST00000396144		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
intron-intron	ENST00000374768	ENST00000375245		TCGA	LD	STAD	TCGA-D7-6528-01A	PARD3	chr10	35103804	-	ARHGAP12	chr10	32132514	-
Frame-shit	ENST00000225402	ENST00000396981		TCGA	LD	STAD	TCGA-D7-6815-01A	AATF	chr17	35311207	+	UBE2G1	chr17	4210418	-
5CDS-5UTR	ENST00000225402	ENST00000572484		TCGA	LD	STAD	TCGA-D7-6815-01A	AATF	chr17	35311207	+	UBE2G1	chr17	4210418	-
intron-3CDS	ENST00000590321	ENST00000396981		TCGA	LD	STAD	TCGA-D7-6815-01A	AATF	chr17	35311207	+	UBE2G1	chr17	4210418	-
intron-5UTR	ENST00000590321	ENST00000572484		TCGA	LD	STAD	TCGA-D7-6815-01A	AATF	chr17	35311207	+	UBE2G1	chr17	4210418	-
5CDS-intron	ENST00000318008	ENST00000494757		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000318008	ENST00000323571		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000318008	ENST00000585043		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000318008	ENST00000394103		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000318008	ENST00000536600		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000318008	ENST00000583130		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000433206	ENST00000494757		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000433206	ENST00000323571		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000433206	ENST00000585043		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000433206	ENST00000394103		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000433206	ENST00000536600		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000433206	ENST00000583130		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000435347	ENST00000494757		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000435347	ENST00000323571		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000435347	ENST00000585043		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000435347	ENST00000394103		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000435347	ENST00000536600		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000435347	ENST00000583130		TCGA	LD	STAD	TCGA-D7-6815-01A	LASP1	chr17	37054772	+	WIPF2	chr17	38412643	+
In-frame	ENST00000377294	ENST00000229729		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
In-frame	ENST00000377294	ENST00000544672		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
In-frame	ENST00000377294	ENST00000375562		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000465707		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000417894		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000550821		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000550401		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000492911		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000453831		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000546461		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000551168		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000495620		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000425238		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000548188		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000549663		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000469478		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000415517		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000547288		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000547493		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000463111		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000383379		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000547684		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000549677		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000497745		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000366281		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000442152		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000553147		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000553121		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000377294	ENST00000495181		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
Frame-shit	ENST00000423974	ENST00000229729		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
Frame-shit	ENST00000423974	ENST00000544672		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
Frame-shit	ENST00000423974	ENST00000375562		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000465707		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000417894		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000550821		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000550401		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000492911		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000453831		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000546461		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000551168		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000495620		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000425238		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000548188		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000549663		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000469478		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000415517		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000547288		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000547493		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000463111		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000383379		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000547684		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000549677		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000497745		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000366281		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000442152		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000553147		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000553121		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
5CDS-intron	ENST00000423974	ENST00000495181		TCGA	LD	STAD	TCGA-D7-6815-01A	ZKSCAN4	chr6	28215845	-	SLC44A4	chr6	31833903	-
In-frame	ENST00000336665	ENST00000361671		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
5CDS-intron	ENST00000336665	ENST00000376040		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
In-frame	ENST00000304032	ENST00000361671		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
5CDS-intron	ENST00000304032	ENST00000376040		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
In-frame	ENST00000409538	ENST00000361671		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
5CDS-intron	ENST00000409538	ENST00000376040		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
In-frame	ENST00000428334	ENST00000361671		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
5CDS-intron	ENST00000428334	ENST00000376040		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
In-frame	ENST00000409457	ENST00000361671		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
5CDS-intron	ENST00000409457	ENST00000376040		TCGA	LD	STAD	TCGA-D7-6818-01A	AGAP1	chr2	236659132	+	NAA35	chr9	88611314	+
In-frame	ENST00000600603	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000600603	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000600603	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000600603	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000600603	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000600603	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601638	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601638	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601638	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601638	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601638	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000601638	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000221557	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000221557	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000221557	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000221557	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000221557	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000221557	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000598325	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000598325	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000598325	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000598325	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
3UTR-3CDS	ENST00000598325	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
3UTR-5UTR	ENST00000598325	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000391842	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000391842	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000391842	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000391842	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000391842	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000391842	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000599732	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000599732	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000599732	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000599732	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000599732	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000599732	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601675	ENST00000570565		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601675	ENST00000442502		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601675	ENST00000340813		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601675	ENST00000451037		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000601675	ENST00000285273		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
5CDS-5UTR	ENST00000601675	ENST00000571918		TCGA	LD	STAD	TCGA-D7-6818-01A	PTOV1	chr19	50361910	+	CA10	chr17	49825178	-
In-frame	ENST00000396153	ENST00000378536		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
5CDS-3UTR	ENST00000396153	ENST00000478223		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
Frame-shit	ENST00000371778	ENST00000378536		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
5CDS-3UTR	ENST00000371778	ENST00000478223		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
intron-3CDS	ENST00000545823	ENST00000378536		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
intron-3UTR	ENST00000545823	ENST00000478223		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
intron-3CDS	ENST00000472808	ENST00000378536		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
intron-3UTR	ENST00000472808	ENST00000478223		TCGA	LD	STAD	TCGA-D7-6822-01A	FAF1	chr1	51425439	-	SKI	chr1	2234417	+
In-frame	ENST00000331920	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000331920	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000331920	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000418258	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000418258	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000418258	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000421141	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000421141	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000421141	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000437951	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000437951	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000437951	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000430669	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000430669	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000430669	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000429896	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000429896	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000429896	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000375274	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
In-frame	ENST00000375274	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
5CDS-5UTR	ENST00000375274	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
intron-3CDS	ENST00000548379	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
intron-3CDS	ENST00000548379	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
intron-5UTR	ENST00000548379	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
intron-3CDS	ENST00000468211	ENST00000289081		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
intron-3CDS	ENST00000468211	ENST00000375305		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
intron-5UTR	ENST00000468211	ENST00000464653		TCGA	LD	STAD	TCGA-D7-6822-01A	PTCH1	chr9	98238316	-	FANCC	chr9	97879672	-
Frame-shit	ENST00000424085	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000424085	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000424085	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000424085	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000424085	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000424085	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000424085	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000257075	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000257075	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000257075	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000257075	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000257075	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000257075	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000257075	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000373747	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000373747	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000373747	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000373747	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000373747	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000373747	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000373747	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000426105	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000426105	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000426105	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000426105	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000426105	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000426105	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000426105	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000440538	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000440538	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000440538	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000440538	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000440538	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000440538	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000440538	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373741	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373741	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373741	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373741	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373741	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000373741	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000373741	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000423018	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000423018	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000423018	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000423018	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
Frame-shit	ENST00000423018	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000423018	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000423018	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373742	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373742	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373742	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373742	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000373742	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-5UTR	ENST00000373742	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
5CDS-intron	ENST00000373742	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000490546	ENST00000574590		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000490546	ENST00000575318		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000490546	ENST00000572904		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000490546	ENST00000262419		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-3CDS	ENST00000490546	ENST00000432791		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-5UTR	ENST00000490546	ENST00000393476		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
intron-intron	ENST00000490546	ENST00000576248		TCGA	LD	STAD	TCGA-D7-6822-01A	PUM1	chr1	31532051	-	KANSL1	chr17	44145033	-
In-frame	ENST00000378536	ENST00000396153		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
In-frame	ENST00000378536	ENST00000371778		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000378536	ENST00000545823		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
5CDS-intron	ENST00000378536	ENST00000472808		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000478223	ENST00000396153		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
intron-3CDS	ENST00000478223	ENST00000371778		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
intron-intron	ENST00000478223	ENST00000545823		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
intron-intron	ENST00000478223	ENST00000472808		TCGA	LD	STAD	TCGA-D7-6822-01A	SKI	chr1	2161174	+	FAF1	chr1	51267349	-
5UTR-3CDS	ENST00000348370	ENST00000288207		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
5UTR-3CDS	ENST00000348370	ENST00000559622		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
5UTR-3CDS	ENST00000434298	ENST00000288207		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
5UTR-3CDS	ENST00000434298	ENST00000559622		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
5UTR-3CDS	ENST00000559209	ENST00000288207		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
5UTR-3CDS	ENST00000559209	ENST00000559622		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000557998	ENST00000288207		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000557998	ENST00000559622		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000561186	ENST00000288207		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000561186	ENST00000559622		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000560080	ENST00000288207		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000560080	ENST00000559622		TCGA	LD	STAD	TCGA-D7-8570-01A	RNF111	chr15	59280267	+	CCNB2	chr15	59415716	+
intron-3CDS	ENST00000584601	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584601	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000406381	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000406381	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000541774	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000541774	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000445658	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000445658	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000540147	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540147	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000584450	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000584450	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000269571	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000269571	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000578199	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000578199	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-3CDS	ENST00000540042	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
intron-intron	ENST00000540042	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-3CDS	ENST00000584888	ENST00000346872		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000394189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000439167		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000535189		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000377944		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000377945		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000377952		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000377958		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000346243		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000350532		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000351680		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000467757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000439016		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
3UTR-intron	ENST00000584888	ENST00000583368		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37886516	+	IKZF3	chr17	37949186	-
5CDS-intron	ENST00000584601	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584601	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584601	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584601	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584601	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584601	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000406381	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000406381	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000406381	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000406381	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000406381	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000406381	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000541774	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000541774	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000541774	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000541774	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000541774	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000541774	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000445658	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000445658	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000445658	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000445658	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000445658	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000445658	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000540147	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540147	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540147	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540147	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540147	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540147	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000584450	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584450	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584450	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584450	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584450	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000584450	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000269571	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000269571	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000269571	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000269571	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000269571	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000269571	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000578199	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000578199	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000578199	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000578199	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000578199	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000578199	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-intron	ENST00000540042	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540042	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540042	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540042	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540042	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000540042	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-intron	ENST00000584888	ENST00000494757		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000584888	ENST00000323571		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000584888	ENST00000585043		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000584888	ENST00000394103		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000584888	ENST00000536600		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000584888	ENST00000583130		TCGA	LD	STAD	TCGA-D7-8573-01A	ERBB2	chr17	37873733	+	WIPF2	chr17	38412643	+
intron-5UTR	ENST00000579146	ENST00000580825		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000579146	ENST00000254079		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000579146	ENST00000579000		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000579146	ENST00000394265		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000579146	ENST00000394267		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-5UTR	ENST00000300658	ENST00000580825		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-5UTR	ENST00000300658	ENST00000254079		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-5UTR	ENST00000300658	ENST00000579000		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-intron	ENST00000300658	ENST00000394265		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-intron	ENST00000300658	ENST00000394267		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-5UTR	ENST00000378011	ENST00000580825		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-5UTR	ENST00000378011	ENST00000254079		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-5UTR	ENST00000378011	ENST00000579000		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-intron	ENST00000378011	ENST00000394265		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
5CDS-intron	ENST00000378011	ENST00000394267		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000429199	ENST00000580825		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000429199	ENST00000254079		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-5UTR	ENST00000429199	ENST00000579000		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000429199	ENST00000394265		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-intron	ENST00000429199	ENST00000394267		TCGA	LD	STAD	TCGA-D7-8573-01A	PGAP3	chr17	37830870	-	PPP1R1B	chr17	37783559	+
intron-3CDS	ENST00000560609	ENST00000242728		TCGA	LD	STAD	TCGA-D7-8575-01A	ABHD17C	chr15	80988360	+	BHLHE41	chr12	26277515	-
In-frame	ENST00000258884	ENST00000242728		TCGA	LD	STAD	TCGA-D7-8575-01A	ABHD17C	chr15	80988360	+	BHLHE41	chr12	26277515	-
In-frame	ENST00000558464	ENST00000242728		TCGA	LD	STAD	TCGA-D7-8575-01A	ABHD17C	chr15	80988360	+	BHLHE41	chr12	26277515	-
intron-3CDS	ENST00000559506	ENST00000242728		TCGA	LD	STAD	TCGA-D7-8575-01A	ABHD17C	chr15	80988360	+	BHLHE41	chr12	26277515	-
In-frame	ENST00000347330	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000413209	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000338641	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000403435	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000361452	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000403999	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000334961	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000353887	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000361166	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000397789	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
In-frame	ENST00000361676	ENST00000216144		TCGA	LD	STAD	TCGA-D7-8575-01A	NF2	chr22	30000101	+	CABP7	chr22	30125044	+
5UTR-3CDS	ENST00000319670	ENST00000341500		TCGA	LD	STAD	TCGA-D7-8576-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
5UTR-3CDS	ENST00000319670	ENST00000302850		TCGA	LD	STAD	TCGA-D7-8576-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000341500		TCGA	LD	STAD	TCGA-D7-8576-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
intron-3CDS	ENST00000359920	ENST00000302850		TCGA	LD	STAD	TCGA-D7-8576-01A	ARHGEF18	chr19	7460133	+	INSR	chr19	7267907	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-D7-8576-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-D7-8576-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-D7-8576-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-D7-8576-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-D7-8576-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-D7-8576-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
intron-5UTR	ENST00000442101	ENST00000405591		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000442101	ENST00000431572		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-intron	ENST00000442101	ENST00000381116		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000442101	ENST00000381120		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-intron	ENST00000442101	ENST00000461838		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000498824	ENST00000405591		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000498824	ENST00000431572		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-intron	ENST00000498824	ENST00000381116		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000498824	ENST00000381120		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-intron	ENST00000498824	ENST00000461838		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000239882	ENST00000405591		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000239882	ENST00000431572		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-intron	ENST00000239882	ENST00000381116		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-5UTR	ENST00000239882	ENST00000381120		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
intron-intron	ENST00000239882	ENST00000461838		TCGA	LD	STAD	TCGA-D7-8576-01A	ELF1	chr13	41634974	-	MTIF3	chr13	28019293	-
5CDS-3UTR	ENST00000376387	ENST00000414992		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	DCUN1D2-AS	chr13	114130175	+
5CDS-3UTR	ENST00000376387	ENST00000453584		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	DCUN1D2-AS	chr13	114130175	+
intron-3UTR	ENST00000463709	ENST00000414992		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	DCUN1D2-AS	chr13	114130175	+
intron-3UTR	ENST00000463709	ENST00000453584		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	DCUN1D2-AS	chr13	114130175	+
5CDS-intron	ENST00000376387	ENST00000498088		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	IL17D	chr13	21295775	+
5CDS-intron	ENST00000376387	ENST00000304920		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	IL17D	chr13	21295775	+
intron-intron	ENST00000463709	ENST00000498088		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	IL17D	chr13	21295775	+
intron-intron	ENST00000463709	ENST00000304920		TCGA	LD	STAD	TCGA-D7-8578-01A	TM9SF2	chr13	100206709	+	IL17D	chr13	21295775	+
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-D7-8579-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-D7-8579-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-D7-8579-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-D7-8579-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-D7-8579-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-D7-8579-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
Frame-shit	ENST00000534111	ENST00000411589		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000534111	ENST00000359862		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000534111	ENST00000442938		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000534111	ENST00000544878		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000534111	ENST00000354284		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000534111	ENST00000529001		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000534111	ENST00000354064		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000534111	ENST00000533102		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000534111	ENST00000313236		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000534111	ENST00000524725		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522307	ENST00000411589		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522307	ENST00000359862		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522307	ENST00000442938		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522307	ENST00000544878		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522307	ENST00000354284		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522307	ENST00000529001		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522307	ENST00000354064		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522307	ENST00000533102		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522307	ENST00000313236		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522307	ENST00000524725		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000523251	ENST00000411589		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000523251	ENST00000359862		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000523251	ENST00000442938		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000523251	ENST00000544878		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000523251	ENST00000354284		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000523251	ENST00000529001		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000523251	ENST00000354064		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000523251	ENST00000533102		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000523251	ENST00000313236		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000523251	ENST00000524725		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000437212	ENST00000411589		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000437212	ENST00000359862		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000437212	ENST00000442938		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000437212	ENST00000544878		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000437212	ENST00000354284		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000437212	ENST00000529001		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000437212	ENST00000354064		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000437212	ENST00000533102		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000437212	ENST00000313236		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000437212	ENST00000524725		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522824	ENST00000411589		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522824	ENST00000359862		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522824	ENST00000442938		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522824	ENST00000544878		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
Frame-shit	ENST00000522824	ENST00000354284		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522824	ENST00000529001		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522824	ENST00000354064		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522824	ENST00000533102		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522824	ENST00000313236		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-intron	ENST00000522824	ENST00000524725		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-3CDS	ENST00000518413	ENST00000411589		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-3CDS	ENST00000518413	ENST00000359862		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-3CDS	ENST00000518413	ENST00000442938		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-3CDS	ENST00000518413	ENST00000544878		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-3CDS	ENST00000518413	ENST00000354284		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-intron	ENST00000518413	ENST00000529001		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-intron	ENST00000518413	ENST00000354064		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-intron	ENST00000518413	ENST00000533102		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-intron	ENST00000518413	ENST00000313236		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
intron-intron	ENST00000518413	ENST00000524725		TCGA	LD	STAD	TCGA-D7-8579-01A	TMPRSS4	chr11	117975535	+	TMEM25	chr11	118404572	+
5CDS-5UTR	ENST00000262291	ENST00000393853		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-5UTR	ENST00000262291	ENST00000240335		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-intron	ENST00000262291	ENST00000589449		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
intron-5UTR	ENST00000537567	ENST00000393853		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
intron-5UTR	ENST00000537567	ENST00000240335		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
intron-intron	ENST00000537567	ENST00000589449		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5UTR-5UTR	ENST00000539763	ENST00000393853		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5UTR-5UTR	ENST00000539763	ENST00000240335		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5UTR-intron	ENST00000539763	ENST00000589449		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-5UTR	ENST00000536180	ENST00000393853		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-5UTR	ENST00000536180	ENST00000240335		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-intron	ENST00000536180	ENST00000589449		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-5UTR	ENST00000545362	ENST00000393853		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-5UTR	ENST00000545362	ENST00000240335		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
5CDS-intron	ENST00000545362	ENST00000589449		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
intron-5UTR	ENST00000588617	ENST00000393853		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
intron-5UTR	ENST00000588617	ENST00000240335		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
intron-intron	ENST00000588617	ENST00000589449		TCGA	LD	STAD	TCGA-D7-8579-01A	VMP1	chr17	57816308	+	TBX4	chr17	59533849	+
Frame-shit	ENST00000273009	ENST00000409613		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000273009	ENST00000264059		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
In-frame	ENST00000273009	ENST00000409708		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000273009	ENST00000410095		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000360410	ENST00000409613		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000360410	ENST00000264059		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000360410	ENST00000409708		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000360410	ENST00000410095		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000325385	ENST00000409613		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000325385	ENST00000264059		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
In-frame	ENST00000325385	ENST00000409708		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000325385	ENST00000410095		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409401	ENST00000409613		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409401	ENST00000264059		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409401	ENST00000409708		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409401	ENST00000410095		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000409307	ENST00000409613		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000409307	ENST00000264059		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
In-frame	ENST00000409307	ENST00000409708		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000409307	ENST00000410095		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000470087	ENST00000409613		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000470087	ENST00000264059		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000470087	ENST00000409708		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000470087	ENST00000410095		TCGA	LD	STAD	TCGA-D7-A4YU-01A	DIS3L2	chr2	233075115	+	EFHD1	chr2	233546295	+
In-frame	ENST00000356175	ENST00000325874		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000581280		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000356175	ENST00000394744		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000358273	ENST00000325874		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000581280		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000358273	ENST00000394744		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
In-frame	ENST00000431387	ENST00000325874		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000431387	ENST00000581280		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-intron	ENST00000431387	ENST00000394744		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000581113	ENST00000325874		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000581280		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000581113	ENST00000394744		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000417592	ENST00000325874		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000581280		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000417592	ENST00000394744		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-3CDS	ENST00000444181	ENST00000325874		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000581280		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
intron-intron	ENST00000444181	ENST00000394744		TCGA	LD	STAD	TCGA-D7-A4YU-01A	NF1	chr17	29422387	+	RAB11FIP4	chr17	29758831	+
5CDS-3UTR	ENST00000590923	ENST00000586651		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000247977		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000589626		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000588922		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000585379		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000591009		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000592067		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000590923	ENST00000586469		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-intron	ENST00000590923	ENST00000586073		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000586651		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000247977		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000589626		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000588922		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000585379		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000591009		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000592067		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-3UTR	ENST00000250244	ENST00000586469		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
5CDS-intron	ENST00000250244	ENST00000586073		TCGA	LD	STAD	TCGA-D7-A4YY-01A	AP1M2	chr19	10689568	-	FBXL12	chr19	9922393	-
intron-intron	ENST00000306833	ENST00000539409		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000306833	ENST00000337682		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000306833	ENST00000454658		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000306833	ENST00000395766		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000306833	ENST00000542983		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000306833	ENST00000536836		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-intron	ENST00000389082	ENST00000539409		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-5UTR	ENST00000389082	ENST00000337682		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-5UTR	ENST00000389082	ENST00000454658		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-5UTR	ENST00000389082	ENST00000395766		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-intron	ENST00000389082	ENST00000542983		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-intron	ENST00000389082	ENST00000536836		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000536562	ENST00000539409		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000536562	ENST00000337682		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000536562	ENST00000454658		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-5UTR	ENST00000536562	ENST00000395766		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000536562	ENST00000542983		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
intron-intron	ENST00000536562	ENST00000536836		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-intron	ENST00000354285	ENST00000539409		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-5UTR	ENST00000354285	ENST00000337682		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-5UTR	ENST00000354285	ENST00000454658		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-5UTR	ENST00000354285	ENST00000395766		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-intron	ENST00000354285	ENST00000542983		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5CDS-intron	ENST00000354285	ENST00000536836		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5UTR-intron	ENST00000545147	ENST00000539409		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5UTR-5UTR	ENST00000545147	ENST00000337682		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5UTR-5UTR	ENST00000545147	ENST00000454658		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5UTR-5UTR	ENST00000545147	ENST00000395766		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5UTR-intron	ENST00000545147	ENST00000542983		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
5UTR-intron	ENST00000545147	ENST00000536836		TCGA	LD	STAD	TCGA-D7-A4YY-01A	DENND5B	chr12	31743640	-	FAM60A	chr12	31451158	-
In-frame	ENST00000518525	ENST00000523189		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
5CDS-intron	ENST00000518525	ENST00000521759		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
In-frame	ENST00000265294	ENST00000523189		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
5CDS-intron	ENST00000265294	ENST00000521759		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
In-frame	ENST00000519385	ENST00000523189		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
5CDS-intron	ENST00000519385	ENST00000521759		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
In-frame	ENST00000519598	ENST00000523189		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
5CDS-intron	ENST00000519598	ENST00000521759		TCGA	LD	STAD	TCGA-D7-A4YY-01A	GABRP	chr5	170216251	+	RANBP17	chr5	170380601	+
In-frame	ENST00000409532	ENST00000264111		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000409532	ENST00000397081		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000409036		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000397087		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000538974		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000540783		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000539331		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000473043		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409532	ENST00000535187		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000264107	ENST00000264111		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000264107	ENST00000397081		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000409036		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000397087		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000538974		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000540783		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000539331		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000473043		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264107	ENST00000535187		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000343713	ENST00000264111		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000343713	ENST00000397081		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000409036		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000397087		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000538974		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000540783		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000539331		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000473043		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000343713	ENST00000535187		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000264106	ENST00000264111		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000264106	ENST00000397081		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000409036		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000397087		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000538974		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000540783		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000539331		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000473043		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000264106	ENST00000535187		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000375221	ENST00000264111		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000375221	ENST00000397081		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000409036		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000397087		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000538974		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000540783		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000539331		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000473043		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000375221	ENST00000535187		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000409080	ENST00000264111		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
In-frame	ENST00000409080	ENST00000397081		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000409036		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000397087		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000538974		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000540783		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000539331		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000473043		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000409080	ENST00000535187		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ITGA6	chr2	173356251	+	RAPGEF4	chr2	173898642	+
5CDS-intron	ENST00000607273	ENST00000341807		TCGA	LD	STAD	TCGA-D7-A4YY-01A	PRIM2	chr6	57190843	+	COL22A1	chr8	139749820	-
5CDS-intron	ENST00000607273	ENST00000303045		TCGA	LD	STAD	TCGA-D7-A4YY-01A	PRIM2	chr6	57190843	+	COL22A1	chr8	139749820	-
5CDS-intron	ENST00000607273	ENST00000435777		TCGA	LD	STAD	TCGA-D7-A4YY-01A	PRIM2	chr6	57190843	+	COL22A1	chr8	139749820	-
3UTR-intron	ENST00000389488	ENST00000341807		TCGA	LD	STAD	TCGA-D7-A4YY-01A	PRIM2	chr6	57190843	+	COL22A1	chr8	139749820	-
3UTR-intron	ENST00000389488	ENST00000303045		TCGA	LD	STAD	TCGA-D7-A4YY-01A	PRIM2	chr6	57190843	+	COL22A1	chr8	139749820	-
3UTR-intron	ENST00000389488	ENST00000435777		TCGA	LD	STAD	TCGA-D7-A4YY-01A	PRIM2	chr6	57190843	+	COL22A1	chr8	139749820	-
Frame-shit	ENST00000360079	ENST00000361204		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000360079	ENST00000491541		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
Frame-shit	ENST00000402580	ENST00000361204		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000402580	ENST00000491541		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
Frame-shit	ENST00000428575	ENST00000361204		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000428575	ENST00000491541		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
Frame-shit	ENST00000359308	ENST00000361204		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000359308	ENST00000491541		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
Frame-shit	ENST00000405878	ENST00000361204		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000405878	ENST00000491541		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
Frame-shit	ENST00000405506	ENST00000361204		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5CDS-intron	ENST00000405506	ENST00000491541		TCGA	LD	STAD	TCGA-D7-A4YY-01A	XRCC6	chr22	42033795	+	SREBF2	chr22	42262835	+
5UTR-3CDS	ENST00000360647	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
5UTR-3CDS	ENST00000468369	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
5UTR-3CDS	ENST00000484491	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
5UTR-3CDS	ENST00000544464	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
5UTR-3CDS	ENST00000492394	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
5UTR-3CDS	ENST00000485866	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
intron-3CDS	ENST00000497929	ENST00000296220		TCGA	LD	STAD	TCGA-D7-A4YY-01A	ZNF148	chr3	125093946	-	OSBPL11	chr3	125271523	-
In-frame	ENST00000343735	ENST00000337414		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000343735	ENST00000380718		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000343735	ENST00000380732		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000343735	ENST00000534860		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000343735	ENST00000380736		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000343735	ENST00000303025		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000343735	ENST00000413512		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000343735	ENST00000491514		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000183605	ENST00000337414		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000183605	ENST00000380718		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000183605	ENST00000380732		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
In-frame	ENST00000183605	ENST00000534860		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000183605	ENST00000380736		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000183605	ENST00000303025		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-5UTR	ENST00000183605	ENST00000413512		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
5CDS-intron	ENST00000183605	ENST00000491514		TCGA	LD	STAD	TCGA-D7-A4Z0-01A	CLDN18	chr3	137749947	+	ARHGAP6	chrX	11272827	-
intron-5UTR	ENST00000369760	ENST00000369242		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-5UTR	ENST00000369760	ENST00000254759		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-intron	ENST00000369760	ENST00000369240		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-5UTR	ENST00000369760	ENST00000479163		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-5UTR	ENST00000356489	ENST00000369242		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-5UTR	ENST00000356489	ENST00000254759		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-intron	ENST00000356489	ENST00000369240		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-5UTR	ENST00000356489	ENST00000479163		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-5UTR	ENST00000320393	ENST00000369242		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-5UTR	ENST00000320393	ENST00000254759		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-intron	ENST00000320393	ENST00000369240		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
5CDS-5UTR	ENST00000320393	ENST00000479163		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
3UTR-5UTR	ENST00000545529	ENST00000369242		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
3UTR-5UTR	ENST00000545529	ENST00000254759		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
3UTR-intron	ENST00000545529	ENST00000369240		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
3UTR-5UTR	ENST00000545529	ENST00000479163		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-5UTR	ENST00000486968	ENST00000369242		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-5UTR	ENST00000486968	ENST00000254759		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-intron	ENST00000486968	ENST00000369240		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
intron-5UTR	ENST00000486968	ENST00000479163		TCGA	LD	STAD	TCGA-D7-A6EX-01A	BCKDHB	chr6	80881107	+	COQ3	chr6	99831700	-
In-frame	ENST00000265734	ENST00000284136		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
In-frame	ENST00000265734	ENST00000444867		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
5CDS-intron	ENST00000265734	ENST00000484038		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
Frame-shit	ENST00000424848	ENST00000284136		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
Frame-shit	ENST00000424848	ENST00000444867		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
5CDS-intron	ENST00000424848	ENST00000484038		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
intron-3CDS	ENST00000491250	ENST00000284136		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
intron-3CDS	ENST00000491250	ENST00000444867		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
intron-intron	ENST00000491250	ENST00000484038		TCGA	LD	STAD	TCGA-D7-A6EX-01A	CDK6	chr7	92404010	-	SEMA3D	chr7	84685175	-
intron-intron	ENST00000373583	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373583	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373583	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000373573	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000373573	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000373573	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000373589	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000373589	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000373589	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000429103	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000429103	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
5CDS-intron	ENST00000429103	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373571	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373571	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373571	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000439122	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000439122	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000439122	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373560	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373560	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373560	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373559	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373559	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373559	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373561	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373561	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373561	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000478743	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000478743	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000478743	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373556	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373556	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373556	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373554	ENST00000316084		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373554	ENST00000486733		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
intron-intron	ENST00000373554	ENST00000373626		TCGA	LD	STAD	TCGA-D7-A6EX-01A	HDAC8	chrX	71681854	-	RPS4X	chrX	71475904	-
In-frame	ENST00000333891	ENST00000380050		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
In-frame	ENST00000333891	ENST00000265741		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
In-frame	ENST00000333891	ENST00000406263		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
5CDS-intron	ENST00000333891	ENST00000436577		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
5CDS-intron	ENST00000333891	ENST00000496279		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
In-frame	ENST00000423517	ENST00000380050		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
In-frame	ENST00000423517	ENST00000265741		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
In-frame	ENST00000423517	ENST00000406263		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
5CDS-intron	ENST00000423517	ENST00000436577		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
5CDS-intron	ENST00000423517	ENST00000496279		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-3CDS	ENST00000437081	ENST00000380050		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-3CDS	ENST00000437081	ENST00000265741		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-3CDS	ENST00000437081	ENST00000406263		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-intron	ENST00000437081	ENST00000436577		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-intron	ENST00000437081	ENST00000496279		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-3CDS	ENST00000426442	ENST00000380050		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-3CDS	ENST00000426442	ENST00000265741		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-3CDS	ENST00000426442	ENST00000406263		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-intron	ENST00000426442	ENST00000436577		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
intron-intron	ENST00000426442	ENST00000496279		TCGA	LD	STAD	TCGA-D7-A6EX-01A	PCLO	chr7	82595087	-	CDK14	chr7	90376996	+
5CDS-3UTR	ENST00000313654	ENST00000578646		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
5CDS-3UTR	ENST00000313654	ENST00000261537		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
5CDS-3UTR	ENST00000399516	ENST00000578646		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
5CDS-3UTR	ENST00000399516	ENST00000261537		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
intron-3UTR	ENST00000269217	ENST00000578646		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
intron-3UTR	ENST00000269217	ENST00000261537		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
intron-3UTR	ENST00000587184	ENST00000578646		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
intron-3UTR	ENST00000587184	ENST00000261537		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
intron-3UTR	ENST00000588770	ENST00000578646		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
intron-3UTR	ENST00000588770	ENST00000261537		TCGA	LD	STAD	TCGA-D7-A6EY-01A	LAMA3	chr18	21269941	+	MIB1	chr18	19433101	+
5UTR-intron	ENST00000534424	ENST00000419152		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000532400		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000532741		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000317198		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000526838		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000442189		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000528610		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000423316		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000395119		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000529272		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000531621		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000524624		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-intron	ENST00000534424	ENST00000531770		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000419152		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000532400		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000532741		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000317198		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000526838		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000442189		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000528610		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000423316		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000395119		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000529272		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000531621		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000524624		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5CDS-intron	ENST00000426825	ENST00000531770		TCGA	LD	STAD	TCGA-D7-A6EY-01A	OPLAH	chr8	145109932	-	EEF1D	chr8	144672251	-
5UTR-3CDS	ENST00000418115	ENST00000232375		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000418115	ENST00000536104		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000418115	ENST00000416568		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000418115	ENST00000541519		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000418115	ENST00000383734		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000418115	ENST00000490115		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000418115	ENST00000545984		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000454011	ENST00000232375		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000454011	ENST00000536104		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000454011	ENST00000416568		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000454011	ENST00000541519		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000454011	ENST00000383734		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000454011	ENST00000490115		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000454011	ENST00000545984		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000422781	ENST00000232375		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000422781	ENST00000536104		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-3CDS	ENST00000422781	ENST00000416568		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000422781	ENST00000541519		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000422781	ENST00000383734		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000422781	ENST00000490115		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5UTR-5UTR	ENST00000422781	ENST00000545984		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-3CDS	ENST00000265538	ENST00000232375		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-3CDS	ENST00000265538	ENST00000536104		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-3CDS	ENST00000265538	ENST00000416568		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-5UTR	ENST00000265538	ENST00000541519		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-5UTR	ENST00000265538	ENST00000383734		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-5UTR	ENST00000265538	ENST00000490115		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
intron-5UTR	ENST00000265538	ENST00000545984		TCGA	LD	STAD	TCGA-D7-A6EY-01A	RHOA	chr3	49449253	-	PFKFB4	chr3	48587667	-
5CDS-5UTR	ENST00000269886	ENST00000250937		TCGA	LD	STAD	TCGA-D7-A6EY-01A	SH3GL1	chr19	4400321	-	DOHH	chr19	3496884	-
5CDS-5UTR	ENST00000269886	ENST00000427575		TCGA	LD	STAD	TCGA-D7-A6EY-01A	SH3GL1	chr19	4400321	-	DOHH	chr19	3496884	-
5CDS-5UTR	ENST00000598564	ENST00000250937		TCGA	LD	STAD	TCGA-D7-A6EY-01A	SH3GL1	chr19	4400321	-	DOHH	chr19	3496884	-
5CDS-5UTR	ENST00000598564	ENST00000427575		TCGA	LD	STAD	TCGA-D7-A6EY-01A	SH3GL1	chr19	4400321	-	DOHH	chr19	3496884	-
5CDS-5UTR	ENST00000417295	ENST00000250937		TCGA	LD	STAD	TCGA-D7-A6EY-01A	SH3GL1	chr19	4400321	-	DOHH	chr19	3496884	-
5CDS-5UTR	ENST00000417295	ENST00000427575		TCGA	LD	STAD	TCGA-D7-A6EY-01A	SH3GL1	chr19	4400321	-	DOHH	chr19	3496884	-
intron-5UTR	ENST00000588030	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000589660	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000588090	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000591935	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000589710	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000588230	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000413636	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000586472	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000589686	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000444172	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000587323	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000320936	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000587896	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000589235	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000585630	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000586773	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
intron-5UTR	ENST00000590188	ENST00000338270		TCGA	LD	STAD	TCGA-D7-A6EZ-01A	CIRBP	chr19	1269409	+	ERAS	chrX	48687491	+
In-frame	ENST00000369016	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000369016	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000369016	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000369014	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000369014	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000369014	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-3CDS	ENST00000369009	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-intron	ENST00000369009	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-5UTR	ENST00000369009	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000339643	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000339643	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000339643	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000271690	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000271690	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000271690	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-3CDS	ENST00000356527	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-intron	ENST00000356527	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-5UTR	ENST00000356527	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-3CDS	ENST00000503345	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-intron	ENST00000503345	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-5UTR	ENST00000503345	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000503241	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000503241	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000503241	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-3CDS	ENST00000362052	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-intron	ENST00000362052	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
intron-5UTR	ENST00000362052	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000361532	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000361532	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000361532	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000361631	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000361631	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000361631	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
In-frame	ENST00000513281	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-intron	ENST00000513281	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5CDS-5UTR	ENST00000513281	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5UTR-3CDS	ENST00000354702	ENST00000368985		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5UTR-intron	ENST00000354702	ENST00000448301		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
5UTR-5UTR	ENST00000354702	ENST00000480760		TCGA	LD	STAD	TCGA-D7-A6F0-01A	ENSA	chr1	150599943	-	CTSS	chr1	150727626	-
Frame-shit	ENST00000263881	ENST00000395035		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
Frame-shit	ENST00000263881	ENST00000378803		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
5UTR-3CDS	ENST00000437545	ENST00000395035		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
5UTR-3CDS	ENST00000437545	ENST00000378803		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
Frame-shit	ENST00000341681	ENST00000395035		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
Frame-shit	ENST00000341681	ENST00000378803		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
Frame-shit	ENST00000484274	ENST00000395035		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
Frame-shit	ENST00000484274	ENST00000378803		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
intron-3CDS	ENST00000536018	ENST00000395035		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
intron-3CDS	ENST00000536018	ENST00000378803		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
intron-3CDS	ENST00000474502	ENST00000395035		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
intron-3CDS	ENST00000474502	ENST00000378803		TCGA	LD	STAD	TCGA-D7-A6F0-01A	MAP4K3	chr2	39605207	-	CDKL4	chr2	39440613	-
intron-3CDS	ENST00000393799	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000393799	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000393799	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530427	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530427	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000530427	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000393800	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000393800	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000393800	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000534534	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000534534	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000534534	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524845	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524845	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000524845	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000265637	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000265637	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000265637	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524904	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000524904	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000524904	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000393801	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000393801	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000393801	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000265636	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000265636	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000265636	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000529710	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000529710	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000529710	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000527403	ENST00000308831		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000527403	ENST00000533360		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
intron-intron	ENST00000527403	ENST00000532559		TCGA	LD	STAD	TCGA-D7-A6F0-01A	PPP6R3	chr11	68272739	+	RHOD	chr11	66833367	+
5CDS-5UTR	ENST00000301244	ENST00000355202		TCGA	LD	STAD	TCGA-D7-A6F0-01A	SPINT2	chr19	38774437	+	ZNF607	chr19	38202593	-
5CDS-5UTR	ENST00000301244	ENST00000395835		TCGA	LD	STAD	TCGA-D7-A6F0-01A	SPINT2	chr19	38774437	+	ZNF607	chr19	38202593	-
5CDS-5UTR	ENST00000587090	ENST00000355202		TCGA	LD	STAD	TCGA-D7-A6F0-01A	SPINT2	chr19	38774437	+	ZNF607	chr19	38202593	-
5CDS-5UTR	ENST00000587090	ENST00000395835		TCGA	LD	STAD	TCGA-D7-A6F0-01A	SPINT2	chr19	38774437	+	ZNF607	chr19	38202593	-
intron-5UTR	ENST00000454580	ENST00000355202		TCGA	LD	STAD	TCGA-D7-A6F0-01A	SPINT2	chr19	38774437	+	ZNF607	chr19	38202593	-
intron-5UTR	ENST00000454580	ENST00000395835		TCGA	LD	STAD	TCGA-D7-A6F0-01A	SPINT2	chr19	38774437	+	ZNF607	chr19	38202593	-
3UTR-intron	ENST00000459775	ENST00000409013		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
3UTR-intron	ENST00000459775	ENST00000409890		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
3UTR-intron	ENST00000459775	ENST00000490508		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
3UTR-intron	ENST00000459775	ENST00000409344		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
3UTR-intron	ENST00000459775	ENST00000428955		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
3UTR-intron	ENST00000459775	ENST00000393852		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
3UTR-intron	ENST00000459775	ENST00000315658		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000409013		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000409890		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000490508		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000409344		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000428955		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000393852		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000450066	ENST00000315658		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000409013		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000409890		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000490508		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000409344		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000428955		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000393852		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409025	ENST00000315658		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000409013		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000409890		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000490508		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000409344		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000428955		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000393852		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409470	ENST00000315658		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000409013		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000409890		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000490508		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000409344		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000428955		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000393852		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000323701	ENST00000315658		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000409013		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000409890		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000490508		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000409344		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000428955		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000393852		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-intron	ENST00000409766	ENST00000315658		TCGA	LD	STAD	TCGA-D7-A6F0-01A	USP39	chr2	85852814	+	ELMOD3	chr2	85614221	+
5CDS-5UTR	ENST00000247833	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000247833	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000247833	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000247833	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000247833	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000247833	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000247833	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000247833	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000247833	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-5UTR	ENST00000378815	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-intron	ENST00000378815	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-5UTR	ENST00000378815	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-intron	ENST00000378815	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-intron	ENST00000378815	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-5UTR	ENST00000378815	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-5UTR	ENST00000378815	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-5UTR	ENST00000378815	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
intron-5UTR	ENST00000378815	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000325555	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000325555	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000325555	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000325555	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000325555	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000325555	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000325555	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000325555	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000325555	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000483530	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000483530	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000483530	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000483530	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000483530	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000483530	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000483530	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000483530	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000483530	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550536	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000550536	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550536	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000550536	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000550536	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550536	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550536	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550536	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550536	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000362025	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000362025	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000362025	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000362025	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000362025	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000362025	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000362025	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000362025	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000362025	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000551641	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000551641	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000551641	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000551641	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000551641	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000551641	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000551641	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000551641	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000551641	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000553099	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000553099	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000553099	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000553099	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000553099	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000553099	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000553099	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000553099	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000553099	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550847	ENST00000331471		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000550847	ENST00000488961		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550847	ENST00000330891		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000550847	ENST00000553096		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-intron	ENST00000550847	ENST00000476098		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550847	ENST00000266661		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550847	ENST00000551160		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550847	ENST00000393365		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
5CDS-5UTR	ENST00000550847	ENST00000533674		TCGA	LD	STAD	TCGA-D7-A6F2-01A	RAB3IP	chr12	70195501	+	BEST3	chr12	70093129	-
In-frame	ENST00000395346	ENST00000330261		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000395346	ENST00000573182		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000395346	ENST00000570394		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
In-frame	ENST00000308360	ENST00000330261		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000308360	ENST00000573182		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000308360	ENST00000570394		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
Frame-shit	ENST00000543734	ENST00000330261		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000543734	ENST00000573182		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000543734	ENST00000570394		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
intron-3CDS	ENST00000465444	ENST00000330261		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
intron-intron	ENST00000465444	ENST00000573182		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
intron-intron	ENST00000465444	ENST00000570394		TCGA	LD	STAD	TCGA-D7-A748-01A	PIGS	chr17	26881869	-	PPP1R27	chr17	79792709	-
Frame-shit	ENST00000209728	ENST00000246657		TCGA	LD	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38451708	+	CCR7	chr17	38715194	-
5CDS-5UTR	ENST00000209728	ENST00000579344		TCGA	LD	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38451708	+	CCR7	chr17	38715194	-
intron-intron	ENST00000209728	ENST00000540235		TCGA	LD	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38460079	+	JUP	chr17	39914057	-
intron-intron	ENST00000209728	ENST00000393930		TCGA	LD	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38460079	+	JUP	chr17	39914057	-
intron-intron	ENST00000209728	ENST00000393931		TCGA	LD	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38460079	+	JUP	chr17	39914057	-
intron-intron	ENST00000209728	ENST00000310706		TCGA	LD	STAD	TCGA-EQ-8122-01A	CDC6	chr17	38460079	+	JUP	chr17	39914057	-
Frame-shit	ENST00000405015	ENST00000304623		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000405015	ENST00000359640		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000405015	ENST00000511377		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000405015	ENST00000458100		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000405015	ENST00000503622		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000405015	ENST00000495388		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000431489	ENST00000304623		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000431489	ENST00000359640		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000431489	ENST00000511377		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000431489	ENST00000458100		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000431489	ENST00000503622		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000431489	ENST00000495388		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000354487	ENST00000304623		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000354487	ENST00000359640		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000354487	ENST00000511377		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000354487	ENST00000458100		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000354487	ENST00000503622		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000354487	ENST00000495388		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000263991	ENST00000304623		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000263991	ENST00000359640		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000263991	ENST00000511377		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000263991	ENST00000458100		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000263991	ENST00000503622		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000263991	ENST00000495388		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000405289	ENST00000304623		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
Frame-shit	ENST00000405289	ENST00000359640		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000405289	ENST00000511377		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000405289	ENST00000458100		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000405289	ENST00000503622		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-intron	ENST00000405289	ENST00000495388		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000496857	ENST00000304623		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
intron-3CDS	ENST00000496857	ENST00000359640		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
intron-intron	ENST00000496857	ENST00000511377		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
intron-5UTR	ENST00000496857	ENST00000458100		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
intron-intron	ENST00000496857	ENST00000503622		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
intron-intron	ENST00000496857	ENST00000495388		TCGA	LD	STAD	TCGA-EQ-8122-01A	EHBP1	chr2	62934430	+	CTNND2	chr5	11732384	-
5CDS-5UTR	ENST00000393939	ENST00000209728		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000347901	ENST00000209728		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000310778	ENST00000209728		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	CDC6	chr17	38445660	+
5CDS-5UTR	ENST00000341193	ENST00000209728		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	CDC6	chr17	38445660	+
5CDS-intron	ENST00000393939	ENST00000494757		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-3UTR	ENST00000393939	ENST00000323571		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000393939	ENST00000585043		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000393939	ENST00000394103		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000393939	ENST00000536600		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000393939	ENST00000583130		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000347901	ENST00000494757		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-3UTR	ENST00000347901	ENST00000323571		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000347901	ENST00000585043		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000347901	ENST00000394103		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000347901	ENST00000536600		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000347901	ENST00000583130		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000310778	ENST00000494757		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-3UTR	ENST00000310778	ENST00000323571		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000310778	ENST00000585043		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000310778	ENST00000394103		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000310778	ENST00000536600		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000310778	ENST00000583130		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000341193	ENST00000494757		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-3UTR	ENST00000341193	ENST00000323571		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000341193	ENST00000585043		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000341193	ENST00000394103		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000341193	ENST00000536600		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5CDS-intron	ENST00000341193	ENST00000583130		TCGA	LD	STAD	TCGA-EQ-8122-01A	HAP1	chr17	39887745	-	WIPF2	chr17	38439524	+
5UTR-3CDS	ENST00000262293	ENST00000330137		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
5UTR-intron	ENST00000262293	ENST00000580541		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
5UTR-intron	ENST00000262293	ENST00000578105		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
5UTR-intron	ENST00000262293	ENST00000583927		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
5UTR-intron	ENST00000262293	ENST00000581068		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
5UTR-intron	ENST00000262293	ENST00000437036		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
5UTR-intron	ENST00000262293	ENST00000583380		TCGA	LD	STAD	TCGA-EQ-8122-01A	PRR11	chr17	57233166	+	SKA2	chr17	57208728	-
In-frame	ENST00000264639	ENST00000264645		TCGA	LD	STAD	TCGA-EQ-8122-01A	PSMD3	chr17	38146450	+	CASC3	chr17	38318006	+
In-frame	ENST00000541736	ENST00000264645		TCGA	LD	STAD	TCGA-EQ-8122-01A	PSMD3	chr17	38146450	+	CASC3	chr17	38318006	+
In-frame	ENST00000456989	ENST00000301659		TCGA	LD	STAD	TCGA-EQ-8122-01A	RAPGEFL1	chr17	38333362	+	GSDMA	chr17	38122564	+
5UTR-3CDS	ENST00000544503	ENST00000301659		TCGA	LD	STAD	TCGA-EQ-8122-01A	RAPGEFL1	chr17	38333362	+	GSDMA	chr17	38122564	+
5UTR-3CDS	ENST00000264644	ENST00000301659		TCGA	LD	STAD	TCGA-EQ-8122-01A	RAPGEFL1	chr17	38333362	+	GSDMA	chr17	38122564	+
intron-3CDS	ENST00000540388	ENST00000301659		TCGA	LD	STAD	TCGA-EQ-8122-01A	RAPGEFL1	chr17	38333362	+	GSDMA	chr17	38122564	+
intron-3CDS	ENST00000436615	ENST00000301659		TCGA	LD	STAD	TCGA-EQ-8122-01A	RAPGEFL1	chr17	38333362	+	GSDMA	chr17	38122564	+
5CDS-intron	ENST00000336308	ENST00000474210		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000336308	ENST00000394231		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000336308	ENST00000577810		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
3UTR-intron	ENST00000578232	ENST00000474210		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
3UTR-intron	ENST00000578232	ENST00000394231		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
3UTR-intron	ENST00000578232	ENST00000577810		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000544210	ENST00000474210		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000544210	ENST00000394231		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000544210	ENST00000577810		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000394250	ENST00000474210		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000394250	ENST00000394231		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000394250	ENST00000577810		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000580611	ENST00000474210		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000580611	ENST00000394231		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000580611	ENST00000577810		TCGA	LD	STAD	TCGA-EQ-8122-01A	STARD3	chr17	37810003	+	MIEN1	chr17	37886544	-
intron-3CDS	ENST00000505350	ENST00000304058		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
intron-3CDS	ENST00000505350	ENST00000510708		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
intron-3CDS	ENST00000505350	ENST00000515439		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000457016	ENST00000304058		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000457016	ENST00000510708		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000457016	ENST00000515439		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000257430	ENST00000304058		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000257430	ENST00000510708		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000257430	ENST00000515439		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000508376	ENST00000304058		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000508376	ENST00000510708		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
In-frame	ENST00000508376	ENST00000515439		TCGA	LD	STAD	TCGA-EQ-A4SO-01A	APC	chr5	112164669	+	DTWD2	chr5	118183913	-
Frame-shit	ENST00000432306	ENST00000534894		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000536810		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000545257		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000355995		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000543371		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000355717		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000538897		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000349937		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000369397		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000352065		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000432306	ENST00000369395		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000432306	ENST00000542695		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369389		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000369386		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000432306	ENST00000466338		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000534894		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000536810		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000545257		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000355995		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000543371		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000355717		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000538897		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000349937		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000369397		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000352065		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
Frame-shit	ENST00000393077	ENST00000369395		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-5UTR	ENST00000393077	ENST00000542695		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369389		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000369386		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5CDS-intron	ENST00000393077	ENST00000466338		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000534894		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000536810		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000545257		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355995		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000543371		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000355717		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000538897		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000349937		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369397		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000352065		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-3CDS	ENST00000483122	ENST00000369395		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-5UTR	ENST00000483122	ENST00000542695		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369389		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000369386		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
intron-intron	ENST00000483122	ENST00000466338		TCGA	LD	STAD	TCGA-F1-A72C-01A	VTI1A	chr10	114298089	+	TCF7L2	chr10	114900943	+
5UTR-3CDS	ENST00000373871	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
5UTR-3CDS	ENST00000436342	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
intron-3CDS	ENST00000373864	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
5UTR-3CDS	ENST00000540618	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
5UTR-3CDS	ENST00000545175	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
5UTR-3CDS	ENST00000373863	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
5UTR-3CDS	ENST00000471498	ENST00000371268		TCGA	LD	STAD	TCGA-FP-7829-01A	EYA3	chr1	28415035	-	TMEM61	chr1	55457509	+
In-frame	ENST00000409381	ENST00000553424		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
In-frame	ENST00000409381	ENST00000554112		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
In-frame	ENST00000409381	ENST00000263636		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
5CDS-intron	ENST00000409381	ENST00000492955		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
In-frame	ENST00000334166	ENST00000553424		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
In-frame	ENST00000334166	ENST00000554112		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
In-frame	ENST00000334166	ENST00000263636		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
5CDS-intron	ENST00000334166	ENST00000492955		TCGA	LD	STAD	TCGA-FP-7829-01A	LYPD6	chr2	150294340	+	LY75	chr2	160755570	-
intron-3CDS	ENST00000427662	ENST00000316673		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000427662	ENST00000609795		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000427662	ENST00000457232		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000427662	ENST00000443598		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000427662	ENST00000316099		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000427662	ENST00000415691		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000369774	ENST00000316673		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
In-frame	ENST00000369774	ENST00000609795		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000369774	ENST00000457232		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000369774	ENST00000443598		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000369774	ENST00000316099		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000369774	ENST00000415691		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000355946	ENST00000316673		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
In-frame	ENST00000355946	ENST00000609795		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000355946	ENST00000457232		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000355946	ENST00000443598		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000355946	ENST00000316099		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
Frame-shit	ENST00000355946	ENST00000415691		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000315994	ENST00000316673		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000315994	ENST00000609795		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000315994	ENST00000457232		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000315994	ENST00000443598		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000315994	ENST00000316099		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000315994	ENST00000415691		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000540321	ENST00000316673		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000540321	ENST00000609795		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000540321	ENST00000457232		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000540321	ENST00000443598		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000540321	ENST00000316099		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000540321	ENST00000415691		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000538130	ENST00000316673		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000538130	ENST00000609795		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000538130	ENST00000457232		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000538130	ENST00000443598		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000538130	ENST00000316099		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3CDS	ENST00000538130	ENST00000415691		TCGA	LD	STAD	TCGA-FP-7829-01A	SH3PXD2A	chr10	105614953	-	HNF4A	chr20	43052658	+
intron-3UTR	ENST00000409262	ENST00000418066		TCGA	LD	STAD	TCGA-FP-7829-01A	TET3	chr2	74230293	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000409262	ENST00000409920		TCGA	LD	STAD	TCGA-FP-7829-01A	TET3	chr2	74230293	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000409262	ENST00000394295		TCGA	LD	STAD	TCGA-FP-7829-01A	TET3	chr2	74230293	+	ANXA4	chr2	70008652	+
intron-5UTR	ENST00000409262	ENST00000536030		TCGA	LD	STAD	TCGA-FP-7829-01A	TET3	chr2	74230293	+	ANXA4	chr2	70008652	+
In-frame	ENST00000449985	ENST00000250113		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5CDS-intron	ENST00000449985	ENST00000573057		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
In-frame	ENST00000532998	ENST00000250113		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5CDS-intron	ENST00000532998	ENST00000573057		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
In-frame	ENST00000437139	ENST00000250113		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5CDS-intron	ENST00000437139	ENST00000573057		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
In-frame	ENST00000533070	ENST00000250113		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5CDS-intron	ENST00000533070	ENST00000573057		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
In-frame	ENST00000316425	ENST00000250113		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5CDS-intron	ENST00000316425	ENST00000573057		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
In-frame	ENST00000431792	ENST00000250113		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5CDS-intron	ENST00000431792	ENST00000573057		TCGA	LD	STAD	TCGA-FP-7829-01A	TMEM107	chr17	8079518	-	FXR2	chr17	7509467	-
5UTR-5UTR	ENST00000377560	ENST00000543106		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000377560	ENST00000389385		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000377560	ENST00000447659		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000377560	ENST00000551052		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000377560	ENST00000415485		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000377560	ENST00000548866		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000377560	ENST00000420983		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000377560	ENST00000549913		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000430131	ENST00000543106		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000430131	ENST00000389385		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000430131	ENST00000447659		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000430131	ENST00000551052		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000430131	ENST00000415485		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000430131	ENST00000548866		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000430131	ENST00000420983		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000430131	ENST00000549913		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000550722	ENST00000543106		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000550722	ENST00000389385		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000550722	ENST00000447659		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000550722	ENST00000551052		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-5UTR	ENST00000550722	ENST00000415485		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000550722	ENST00000548866		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000550722	ENST00000420983		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-intron	ENST00000550722	ENST00000549913		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-5UTR	ENST00000549141	ENST00000543106		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-5UTR	ENST00000549141	ENST00000389385		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-5UTR	ENST00000549141	ENST00000447659		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-5UTR	ENST00000549141	ENST00000551052		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-5UTR	ENST00000549141	ENST00000415485		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-intron	ENST00000549141	ENST00000548866		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-intron	ENST00000549141	ENST00000420983		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
intron-intron	ENST00000549141	ENST00000549913		TCGA	LD	STAD	TCGA-FP-7916-01A	HECTD4	chr12	112819756	-	RPH3A	chr12	113229948	+
5UTR-3CDS	ENST00000451311	ENST00000390559		TCGA	LD	STAD	TCGA-FP-7916-01A	TMSB4X	chrX	12993287	+	IGHM	chr14	106322322	-
5UTR-3CDS	ENST00000380636	ENST00000390559		TCGA	LD	STAD	TCGA-FP-7916-01A	TMSB4X	chrX	12993287	+	IGHM	chr14	106322322	-
intron-3CDS	ENST00000380635	ENST00000390559		TCGA	LD	STAD	TCGA-FP-7916-01A	TMSB4X	chrX	12993287	+	IGHM	chr14	106322322	-
intron-3CDS	ENST00000380633	ENST00000390559		TCGA	LD	STAD	TCGA-FP-7916-01A	TMSB4X	chrX	12993287	+	IGHM	chr14	106322322	-
In-frame	ENST00000399537	ENST00000572316		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
In-frame	ENST00000399537	ENST00000354968		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
In-frame	ENST00000399537	ENST00000393450		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
In-frame	ENST00000430969	ENST00000572316		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
In-frame	ENST00000430969	ENST00000354968		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
In-frame	ENST00000430969	ENST00000393450		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
intron-3CDS	ENST00000399434	ENST00000572316		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
intron-3CDS	ENST00000399434	ENST00000354968		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
intron-3CDS	ENST00000399434	ENST00000393450		TCGA	LD	STAD	TCGA-FP-7916-01A	TNRC18	chr7	5391450	-	MYL4	chr17	45291165	+
5CDS-intron	ENST00000529193	ENST00000434074		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000529193	ENST00000312040		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000451945		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000529655		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000530500		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000526508		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000529193	ENST00000524625		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000359513		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000528494		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000529193	ENST00000526485		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000434074		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000288400	ENST00000312040		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000451945		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000529655		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000530500		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000526508		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-5UTR	ENST00000288400	ENST00000524625		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000359513		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000528494		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
5CDS-intron	ENST00000288400	ENST00000526485		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000434074		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-5UTR	ENST00000534616	ENST00000312040		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000451945		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000529655		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000530500		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000526508		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-5UTR	ENST00000534616	ENST00000524625		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000359513		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000528494		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-intron	ENST00000534616	ENST00000526485		TCGA	LD	STAD	TCGA-FP-8099-01A	CREB3L1	chr11	46299764	+	ATG13	chr11	46651595	+
intron-3CDS	ENST00000302538	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000302538	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000302538	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000544583	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000544583	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000544583	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000572441	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000572441	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000572441	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000574437	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000574437	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000574437	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000291107	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000291107	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000291107	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000543210	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000543210	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000543210	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000536794	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000536794	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000536794	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-3CDS	ENST00000573895	ENST00000264335		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-5UTR	ENST00000573895	ENST00000571732		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000573026		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000575977		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
intron-intron	ENST00000573895	ENST00000498643		TCGA	LD	STAD	TCGA-FP-8631-01A	ABR	chr17	1132087	-	YWHAE	chr17	1268352	-
In-frame	ENST00000535016	ENST00000373053		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000535016	ENST00000357157		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000535016	ENST00000536019		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
5CDS-intron	ENST00000535016	ENST00000605416		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000265872	ENST00000373053		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000265872	ENST00000357157		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000265872	ENST00000536019		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
5CDS-intron	ENST00000265872	ENST00000605416		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000543719	ENST00000373053		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000543719	ENST00000357157		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000543719	ENST00000536019		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
5CDS-intron	ENST00000543719	ENST00000605416		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
intron-3CDS	ENST00000483264	ENST00000373053		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
intron-3CDS	ENST00000483264	ENST00000357157		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
intron-3CDS	ENST00000483264	ENST00000536019		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
intron-intron	ENST00000483264	ENST00000605416		TCGA	LD	STAD	TCGA-FP-8631-01A	CCAR1	chr10	70514584	+	MCU	chr10	74594117	+
In-frame	ENST00000372621	ENST00000427410		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000447388		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000425457		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000456393		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000372654		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000372653		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000372652		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000372651		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000440226		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372621	ENST00000308733		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
5CDS-intron	ENST00000372621	ENST00000483091		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000427410		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000447388		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000425457		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000456393		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000372654		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000372653		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000372652		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000372651		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000440226		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000541520	ENST00000308733		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
5CDS-intron	ENST00000541520	ENST00000483091		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000427410		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000447388		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000425457		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000456393		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000372654		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000372653		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000372652		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000372651		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000440226		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000475060	ENST00000308733		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-intron	ENST00000475060	ENST00000483091		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000427410		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000447388		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000425457		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000456393		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000372654		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000372653		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000372652		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000372651		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000440226		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-3CDS	ENST00000543104	ENST00000308733		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
intron-intron	ENST00000543104	ENST00000483091		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000427410		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000447388		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000425457		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000456393		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000372654		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000372653		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000372652		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000372651		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000440226		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000372616	ENST00000308733		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
5CDS-intron	ENST00000372616	ENST00000483091		TCGA	LD	STAD	TCGA-FP-8631-01A	CTPS1	chr1	41474386	+	NFYC	chr1	41213206	+
In-frame	ENST00000327532	ENST00000317876		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000327532	ENST00000383180		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000327532	ENST00000536478		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000327532	ENST00000341790		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000327532	ENST00000484930		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000327532	ENST00000333911		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
5UTR-3CDS	ENST00000488595	ENST00000317876		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
5UTR-3CDS	ENST00000488595	ENST00000383180		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
5UTR-3CDS	ENST00000488595	ENST00000536478		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
5UTR-3CDS	ENST00000488595	ENST00000341790		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
5UTR-3CDS	ENST00000488595	ENST00000484930		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
5UTR-3CDS	ENST00000488595	ENST00000333911		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000469243	ENST00000317876		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000469243	ENST00000383180		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000469243	ENST00000536478		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000469243	ENST00000341790		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000469243	ENST00000484930		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
In-frame	ENST00000469243	ENST00000333911		TCGA	LD	STAD	TCGA-FP-8631-01A	DZIP1L	chr3	137805803	-	NME9	chr3	138022485	-
Frame-shit	ENST00000374316	ENST00000293748		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000374316	ENST00000418600		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-3UTR	ENST00000374316	ENST00000496374		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000428982		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000461459		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000551507		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000455687		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000395071		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000374316	ENST00000414753		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000605930	ENST00000293748		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000605930	ENST00000418600		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-3UTR	ENST00000605930	ENST00000496374		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000428982		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000461459		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000551507		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000455687		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000395071		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
5CDS-intron	ENST00000605930	ENST00000414753		TCGA	LD	STAD	TCGA-FP-8631-01A	ITPR3	chr6	33646579	+	SYNGAP1	chr6	33391254	+
Frame-shit	ENST00000361757	ENST00000252288		TCGA	LD	STAD	TCGA-FP-8631-01A	SBNO2	chr19	1154183	-	GAMT	chr19	1397498	-
5CDS-intron	ENST00000361757	ENST00000447102		TCGA	LD	STAD	TCGA-FP-8631-01A	SBNO2	chr19	1154183	-	GAMT	chr19	1397498	-
Frame-shit	ENST00000587024	ENST00000252288		TCGA	LD	STAD	TCGA-FP-8631-01A	SBNO2	chr19	1154183	-	GAMT	chr19	1397498	-
5CDS-intron	ENST00000587024	ENST00000447102		TCGA	LD	STAD	TCGA-FP-8631-01A	SBNO2	chr19	1154183	-	GAMT	chr19	1397498	-
intron-3CDS	ENST00000438103	ENST00000252288		TCGA	LD	STAD	TCGA-FP-8631-01A	SBNO2	chr19	1154183	-	GAMT	chr19	1397498	-
intron-intron	ENST00000438103	ENST00000447102		TCGA	LD	STAD	TCGA-FP-8631-01A	SBNO2	chr19	1154183	-	GAMT	chr19	1397498	-
3UTR-3CDS	ENST00000493499	ENST00000429084		TCGA	LD	STAD	TCGA-FP-8631-01A	STAG3L5P	chr7	99936512	+	AP4M1	chr7	99702863	+
3UTR-3CDS	ENST00000493499	ENST00000359593		TCGA	LD	STAD	TCGA-FP-8631-01A	STAG3L5P	chr7	99936512	+	AP4M1	chr7	99702863	+
3UTR-intron	ENST00000493499	ENST00000478501		TCGA	LD	STAD	TCGA-FP-8631-01A	STAG3L5P	chr7	99936512	+	AP4M1	chr7	99702863	+
3UTR-intron	ENST00000493499	ENST00000421755		TCGA	LD	STAD	TCGA-FP-8631-01A	STAG3L5P	chr7	99936512	+	AP4M1	chr7	99702863	+
3UTR-intron	ENST00000493499	ENST00000422582		TCGA	LD	STAD	TCGA-FP-8631-01A	STAG3L5P	chr7	99936512	+	AP4M1	chr7	99702863	+
In-frame	ENST00000323037	ENST00000425331		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
In-frame	ENST00000323037	ENST00000541300		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
In-frame	ENST00000323037	ENST00000428183		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
In-frame	ENST00000323037	ENST00000441711		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
In-frame	ENST00000323037	ENST00000454559		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
In-frame	ENST00000323037	ENST00000323716		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-3CDS	ENST00000459998	ENST00000425331		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-3CDS	ENST00000459998	ENST00000541300		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-3CDS	ENST00000459998	ENST00000428183		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-3CDS	ENST00000459998	ENST00000441711		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-3CDS	ENST00000459998	ENST00000454559		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-3CDS	ENST00000459998	ENST00000323716		TCGA	LD	STAD	TCGA-FP-8631-01A	ZNRF2	chr7	30363353	+	ARMC10	chr7	102724129	+
intron-intron	ENST00000486975	ENST00000264674		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000392736		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000464456		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000472280		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000494292		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000468789		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000460814		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000486975	ENST00000433243		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-5UTR	ENST00000486975	ENST00000485957		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000264674		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000392736		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000464456		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000472280		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000494292		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000468789		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000460814		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000451576	ENST00000433243		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-5UTR	ENST00000451576	ENST00000485957		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000264674		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000392736		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000464456		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000472280		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000494292		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000468789		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000460814		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000064724	ENST00000433243		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-5UTR	ENST00000064724	ENST00000485957		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000264674		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000392736		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000464456		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000472280		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000494292		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000468789		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000460814		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-intron	ENST00000489485	ENST00000433243		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
intron-5UTR	ENST00000489485	ENST00000485957		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CLDN11	chr3	170194661	+	MECOM	chr3	169099312	-
5CDS-intron	ENST00000435070	ENST00000486975		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000435070	ENST00000451576		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000435070	ENST00000064724		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000435070	ENST00000489485		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000456847	ENST00000486975		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000456847	ENST00000451576		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000456847	ENST00000064724		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000456847	ENST00000489485		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000266679	ENST00000486975		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000266679	ENST00000451576		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000266679	ENST00000064724		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000266679	ENST00000489485		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
3UTR-intron	ENST00000550987	ENST00000486975		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
3UTR-intron	ENST00000550987	ENST00000451576		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
3UTR-intron	ENST00000550987	ENST00000064724		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
3UTR-intron	ENST00000550987	ENST00000489485		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000551516	ENST00000486975		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000551516	ENST00000451576		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000551516	ENST00000064724		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5CDS-intron	ENST00000551516	ENST00000489485		TCGA	LD	STAD	TCGA-FP-A8CX-01A	CPSF6	chr12	69633486	+	CLDN11	chr3	170178087	+
5UTR-3CDS	ENST00000355897	ENST00000394126		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000355897	ENST00000356271		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000355897	ENST00000394128		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000355897	ENST00000394127		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
5UTR-intron	ENST00000355897	ENST00000501516		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
5UTR-5UTR	ENST00000355897	ENST00000479829		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
3UTR-3CDS	ENST00000482813	ENST00000394126		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
3UTR-5UTR	ENST00000482813	ENST00000356271		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
3UTR-5UTR	ENST00000482813	ENST00000394128		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
3UTR-5UTR	ENST00000482813	ENST00000394127		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
3UTR-intron	ENST00000482813	ENST00000501516		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
3UTR-5UTR	ENST00000482813	ENST00000479829		TCGA	LD	STAD	TCGA-FP-A8CX-01A	GPR160	chr3	169756831	+	MED24	chr17	38209888	-
5CDS-intron	ENST00000340806	ENST00000474210		TCGA	LD	STAD	TCGA-FP-A8CX-01A	LRRIQ4	chr3	169540729	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000340806	ENST00000394231		TCGA	LD	STAD	TCGA-FP-A8CX-01A	LRRIQ4	chr3	169540729	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000340806	ENST00000577810		TCGA	LD	STAD	TCGA-FP-A8CX-01A	LRRIQ4	chr3	169540729	+	MIEN1	chr17	37886544	-
5CDS-intron	ENST00000295797	ENST00000486975		TCGA	LD	STAD	TCGA-FP-A8CX-01A	PRKCI	chr3	169940558	+	CLDN11	chr3	170194559	+
5CDS-intron	ENST00000295797	ENST00000451576		TCGA	LD	STAD	TCGA-FP-A8CX-01A	PRKCI	chr3	169940558	+	CLDN11	chr3	170194559	+
5CDS-intron	ENST00000295797	ENST00000064724		TCGA	LD	STAD	TCGA-FP-A8CX-01A	PRKCI	chr3	169940558	+	CLDN11	chr3	170194559	+
5CDS-intron	ENST00000295797	ENST00000489485		TCGA	LD	STAD	TCGA-FP-A8CX-01A	PRKCI	chr3	169940558	+	CLDN11	chr3	170194559	+
In-frame	ENST00000293677	ENST00000356663		TCGA	LD	STAD	TCGA-FP-A8CX-01A	RAVER1	chr19	10439318	-	TMEM259	chr19	1014472	-
In-frame	ENST00000293677	ENST00000333175		TCGA	LD	STAD	TCGA-FP-A8CX-01A	RAVER1	chr19	10439318	-	TMEM259	chr19	1014472	-
5UTR-3CDS	ENST00000359979	ENST00000359452		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000359979	ENST00000358110		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000359979	ENST00000372092		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-intron	ENST00000359979	ENST00000479725		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000372088	ENST00000359452		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000372088	ENST00000358110		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000372088	ENST00000372092		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-intron	ENST00000372088	ENST00000479725		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000224756	ENST00000359452		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000224756	ENST00000358110		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-3CDS	ENST00000224756	ENST00000372092		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
5UTR-intron	ENST00000224756	ENST00000479725		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000494144	ENST00000359452		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000494144	ENST00000358110		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000494144	ENST00000372092		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-intron	ENST00000494144	ENST00000479725		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000543283	ENST00000359452		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000543283	ENST00000358110		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000543283	ENST00000372092		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-intron	ENST00000543283	ENST00000479725		TCGA	LD	STAD	TCGA-FP-A9TM-01A	CCSER2	chr10	86088564	+	RGR	chr10	86007397	+
intron-3CDS	ENST00000324342	ENST00000372544		TCGA	LD	STAD	TCGA-HF-7131-01A	RNF128	chrX	105970627	+	CXorf57	chrX	105905245	+
intron-3CDS	ENST00000324342	ENST00000372548		TCGA	LD	STAD	TCGA-HF-7131-01A	RNF128	chrX	105970627	+	CXorf57	chrX	105905245	+
intron-3UTR	ENST00000324342	ENST00000497124		TCGA	LD	STAD	TCGA-HF-7131-01A	RNF128	chrX	105970627	+	CXorf57	chrX	105905245	+
In-frame	ENST00000255499	ENST00000372544		TCGA	LD	STAD	TCGA-HF-7131-01A	RNF128	chrX	105970627	+	CXorf57	chrX	105905245	+
In-frame	ENST00000255499	ENST00000372548		TCGA	LD	STAD	TCGA-HF-7131-01A	RNF128	chrX	105970627	+	CXorf57	chrX	105905245	+
5CDS-3UTR	ENST00000255499	ENST00000497124		TCGA	LD	STAD	TCGA-HF-7131-01A	RNF128	chrX	105970627	+	CXorf57	chrX	105905245	+
Frame-shit	ENST00000369796	ENST00000369799		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
5CDS-3UTR	ENST00000369796	ENST00000475081		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
5CDS-3UTR	ENST00000369796	ENST00000359172		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
5CDS-3UTR	ENST00000369796	ENST00000393614		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
Frame-shit	ENST00000369795	ENST00000369799		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
5CDS-3UTR	ENST00000369795	ENST00000475081		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
5CDS-3UTR	ENST00000369795	ENST00000359172		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
5CDS-3UTR	ENST00000369795	ENST00000393614		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3CDS	ENST00000369794	ENST00000369799		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3UTR	ENST00000369794	ENST00000475081		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3UTR	ENST00000369794	ENST00000359172		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3UTR	ENST00000369794	ENST00000393614		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3CDS	ENST00000461054	ENST00000369799		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3UTR	ENST00000461054	ENST00000475081		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3UTR	ENST00000461054	ENST00000359172		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3UTR	ENST00000461054	ENST00000393614		TCGA	LD	STAD	TCGA-HF-7131-01A	STRIP1	chr1	110583325	+	AHCYL1	chr1	110555009	+
intron-3CDS	ENST00000540797	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000540797	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000540797	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000540797	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000540797	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000380324	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000380324	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000380324	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000380324	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000380324	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000268049	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000268049	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000268049	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000268049	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000268049	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000536001	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000536001	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000536001	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000536001	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000536001	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000539772	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000539772	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000539772	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000539772	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000539772	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000558285	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
Frame-shit	ENST00000558285	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000558285	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000558285	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5CDS-intron	ENST00000558285	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000559711	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000559711	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000559711	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000559711	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000559711	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000558218	ENST00000318217		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-3CDS	ENST00000558218	ENST00000394649		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000558218	ENST00000579584		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000558218	ENST00000584232		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
intron-intron	ENST00000558218	ENST00000583621		TCGA	LD	STAD	TCGA-HF-7131-01A	USP3	chr15	63829355	+	MYO1D	chr17	30821933	-
5UTR-3CDS	ENST00000202028	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000202028	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000202028	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000373950	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000373950	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000373950	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000441639	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000441639	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
5UTR-3CDS	ENST00000441639	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000373946	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000373946	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000373946	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000338074	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000338074	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000338074	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000373941	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000373941	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000373941	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000479336	ENST00000373973		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000479336	ENST00000349339		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3CDS	ENST00000479336	ENST00000538900		TCGA	LD	STAD	TCGA-HF-7132-01A	EPB41L1	chr20	34700402	+	CNBD2	chr20	34582960	+
intron-3UTR	ENST00000302555	ENST00000261267		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000302555	ENST00000549690		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000302555	ENST00000548839		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000381362	ENST00000261267		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381362	ENST00000549690		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381362	ENST00000548839		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000341642	ENST00000261267		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000341642	ENST00000549690		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000341642	ENST00000548839		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000381360	ENST00000261267		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381360	ENST00000549690		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381360	ENST00000548839		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000573897	ENST00000261267		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000573897	ENST00000549690		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
intron-intron	ENST00000573897	ENST00000548839		TCGA	LD	STAD	TCGA-HF-7132-01A	GP2	chr16	20322470	-	LYZ	chr12	69747553	+
5CDS-5UTR	ENST00000315127	ENST00000395048		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000315127	ENST00000379727		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000315127	ENST00000567032		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000315127	ENST00000395049		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-intron	ENST00000315127	ENST00000564596		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000426797	ENST00000395048		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000426797	ENST00000379727		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000426797	ENST00000567032		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000426797	ENST00000395049		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-intron	ENST00000426797	ENST00000564596		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000568176	ENST00000395048		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000568176	ENST00000379727		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000568176	ENST00000567032		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-5UTR	ENST00000568176	ENST00000395049		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
5CDS-intron	ENST00000568176	ENST00000564596		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
intron-5UTR	ENST00000562047	ENST00000395048		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
intron-5UTR	ENST00000562047	ENST00000379727		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
intron-5UTR	ENST00000562047	ENST00000567032		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
intron-5UTR	ENST00000562047	ENST00000395049		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
intron-intron	ENST00000562047	ENST00000564596		TCGA	LD	STAD	TCGA-HF-7133-01A	EDC3	chr15	74948074	-	CYP1A1	chr15	75015467	-
In-frame	ENST00000340748	ENST00000293725		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
In-frame	ENST00000340748	ENST00000595977		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
In-frame	ENST00000540357	ENST00000293725		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
In-frame	ENST00000540357	ENST00000595977		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
In-frame	ENST00000359526	ENST00000293725		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
In-frame	ENST00000359526	ENST00000595977		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
intron-3CDS	ENST00000589538	ENST00000293725		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
intron-3CDS	ENST00000589538	ENST00000595977		TCGA	LD	STAD	TCGA-HF-7134-01A	DNMT1	chr19	10273343	-	ZNF563	chr19	12433525	-
5CDS-intron	ENST00000404338	ENST00000392411		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000321280		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000428708		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000575712		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000575245		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000435091		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000321300		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-3UTR	ENST00000404338	ENST00000573894		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
5CDS-intron	ENST00000404338	ENST00000416299		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000392411		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000321280		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000428708		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000575712		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000575245		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000435091		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000321300		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-3UTR	ENST00000598548	ENST00000573894		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
intron-intron	ENST00000598548	ENST00000416299		TCGA	LD	STAD	TCGA-HF-7136-01A	ARHGAP35	chr19	47440665	+	BAIAP2	chr17	79027468	+
In-frame	ENST00000320876	ENST00000315677		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000581527		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000400147		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000400149		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000400155		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000400150		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000584874		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000534970		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000539435		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000581699		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000400145		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000320876	ENST00000515196		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
5CDS-5UTR	ENST00000320876	ENST00000478161		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000315677		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000581527		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000400147		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000400149		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000400155		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000400150		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000584874		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000534970		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000539435		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000581699		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000400145		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
In-frame	ENST00000261598	ENST00000515196		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
5CDS-5UTR	ENST00000261598	ENST00000478161		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000315677		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000581527		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000400147		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000400149		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000400155		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000400150		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000584874		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000534970		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000539435		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000581699		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000400145		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000609587	ENST00000515196		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
intron-5UTR	ENST00000609587	ENST00000478161		TCGA	LD	STAD	TCGA-HF-7136-01A	SMCHD1	chr18	2674144	+	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000538629	ENST00000264914		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
Frame-shit	ENST00000538629	ENST00000396151		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
Frame-shit	ENST00000538629	ENST00000565165		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
5CDS-intron	ENST00000538629	ENST00000521800		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
3UTR-3CDS	ENST00000339292	ENST00000264914		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
3UTR-3CDS	ENST00000339292	ENST00000396151		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
3UTR-3CDS	ENST00000339292	ENST00000565165		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
3UTR-intron	ENST00000339292	ENST00000521800		TCGA	LD	STAD	TCGA-HF-A5NB-01A	SCAMP1	chr5	77745857	+	ARSB	chr5	78135249	-
Frame-shit	ENST00000290974	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
Frame-shit	ENST00000290974	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5CDS-intron	ENST00000290974	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
Frame-shit	ENST00000511071	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
Frame-shit	ENST00000511071	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5CDS-intron	ENST00000511071	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5UTR-3CDS	ENST00000515312	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5UTR-3CDS	ENST00000515312	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5UTR-intron	ENST00000515312	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5UTR-3CDS	ENST00000515169	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5UTR-3CDS	ENST00000515169	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5UTR-intron	ENST00000515169	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-3CDS	ENST00000509171	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-3CDS	ENST00000509171	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-intron	ENST00000509171	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
Frame-shit	ENST00000503000	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
Frame-shit	ENST00000503000	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
5CDS-intron	ENST00000503000	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-3CDS	ENST00000508471	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-3CDS	ENST00000508471	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-intron	ENST00000508471	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-3CDS	ENST00000505421	ENST00000382865		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-3CDS	ENST00000505421	ENST00000511885		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
intron-intron	ENST00000505421	ENST00000515357		TCGA	LD	STAD	TCGA-HF-A5NB-01A	ZFYVE28	chr4	2355660	-	POLN	chr4	2074756	-
In-frame	ENST00000378746	ENST00000253754		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
In-frame	ENST00000378746	ENST00000379018		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
5CDS-intron	ENST00000378746	ENST00000484620		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
In-frame	ENST00000378735	ENST00000253754		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
In-frame	ENST00000378735	ENST00000379018		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
5CDS-intron	ENST00000378735	ENST00000484620		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
In-frame	ENST00000403231	ENST00000253754		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
In-frame	ENST00000403231	ENST00000379018		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
5CDS-intron	ENST00000403231	ENST00000484620		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
intron-3CDS	ENST00000487055	ENST00000253754		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
intron-3CDS	ENST00000487055	ENST00000379018		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
intron-intron	ENST00000487055	ENST00000484620		TCGA	LD	STAD	TCGA-HU-8238-01A	KIF3A	chr5	132073106	-	PDLIM4	chr5	131598302	+
5CDS-5UTR	ENST00000219473	ENST00000520268		TCGA	LD	STAD	TCGA-HU-8238-01A	USP10	chr16	84733717	+	KB-1562D12.1	chr8	102473845	-
5UTR-5UTR	ENST00000570191	ENST00000520268		TCGA	LD	STAD	TCGA-HU-8238-01A	USP10	chr16	84733717	+	KB-1562D12.1	chr8	102473845	-
3UTR-5UTR	ENST00000562743	ENST00000520268		TCGA	LD	STAD	TCGA-HU-8238-01A	USP10	chr16	84733717	+	KB-1562D12.1	chr8	102473845	-
5UTR-3CDS	ENST00000450466	ENST00000339486		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
5UTR-3CDS	ENST00000450466	ENST00000581585		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
5UTR-3CDS	ENST00000450466	ENST00000577501		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
Frame-shit	ENST00000383233	ENST00000339486		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
Frame-shit	ENST00000383233	ENST00000581585		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
Frame-shit	ENST00000383233	ENST00000577501		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
In-frame	ENST00000542162	ENST00000339486		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
In-frame	ENST00000542162	ENST00000581585		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
In-frame	ENST00000542162	ENST00000577501		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000399707	ENST00000339486		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000399707	ENST00000581585		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000399707	ENST00000577501		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000475185	ENST00000339486		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000475185	ENST00000581585		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
intron-3CDS	ENST00000475185	ENST00000577501		TCGA	LD	STAD	TCGA-HU-8243-01A	TMEM241	chr18	21001331	-	RIOK3	chr18	21042928	+
5UTR-3CDS	ENST00000543523	ENST00000318602		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
5UTR-intron	ENST00000543523	ENST00000542567		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
5UTR-3CDS	ENST00000281172	ENST00000318602		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
5UTR-intron	ENST00000281172	ENST00000542567		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
intron-3CDS	ENST00000543612	ENST00000318602		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
intron-intron	ENST00000543612	ENST00000542567		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
intron-3CDS	ENST00000540613	ENST00000318602		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
intron-intron	ENST00000540613	ENST00000542567		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
intron-3CDS	ENST00000542903	ENST00000318602		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
intron-intron	ENST00000542903	ENST00000542567		TCGA	LD	STAD	TCGA-HU-8249-01A	EPS8	chr12	15942095	-	A2M	chr12	9225467	-
In-frame	ENST00000361475	ENST00000375820		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-intron	ENST00000361475	ENST00000543140		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-intron	ENST00000361475	ENST00000467182		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
In-frame	ENST00000536701	ENST00000375820		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-intron	ENST00000536701	ENST00000543140		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-intron	ENST00000536701	ENST00000467182		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
In-frame	ENST00000536724	ENST00000375820		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-intron	ENST00000536724	ENST00000543140		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-intron	ENST00000536724	ENST00000467182		TCGA	LD	STAD	TCGA-HU-8608-01A	TGM2	chr20	36770466	-	COL4A1	chr13	110802791	-
5CDS-5UTR	ENST00000392347	ENST00000306749		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
5CDS-intron	ENST00000392347	ENST00000579758		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
5CDS-5UTR	ENST00000389641	ENST00000306749		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
5CDS-intron	ENST00000389641	ENST00000579758		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
intron-5UTR	ENST00000392346	ENST00000306749		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
intron-intron	ENST00000392346	ENST00000579758		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
intron-5UTR	ENST00000327026	ENST00000306749		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
intron-intron	ENST00000327026	ENST00000579758		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
5CDS-5UTR	ENST00000392343	ENST00000306749		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
5CDS-intron	ENST00000392343	ENST00000579758		TCGA	LD	STAD	TCGA-HU-A4G3-01A	CCDC57	chr17	80159414	-	FASN	chr17	80054328	-
intron-3CDS	ENST00000167462	ENST00000579662		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000167462	ENST00000339591		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000167462	ENST00000200181		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000167462	ENST00000450894		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000167462	ENST00000449880		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-intron	ENST00000167462	ENST00000584558		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000375227	ENST00000579662		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000375227	ENST00000339591		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000375227	ENST00000200181		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000375227	ENST00000450894		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000375227	ENST00000449880		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-intron	ENST00000375227	ENST00000584558		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000392550	ENST00000579662		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000392550	ENST00000339591		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000392550	ENST00000200181		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000392550	ENST00000450894		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000392550	ENST00000449880		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-intron	ENST00000392550	ENST00000584558		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
5UTR-3CDS	ENST00000578363	ENST00000579662		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
5UTR-3CDS	ENST00000578363	ENST00000339591		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
5UTR-3CDS	ENST00000578363	ENST00000200181		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
5UTR-3CDS	ENST00000578363	ENST00000450894		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
5UTR-3CDS	ENST00000578363	ENST00000449880		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
5UTR-intron	ENST00000578363	ENST00000584558		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000577200	ENST00000579662		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000577200	ENST00000339591		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000577200	ENST00000200181		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000577200	ENST00000450894		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-3CDS	ENST00000577200	ENST00000449880		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-intron	ENST00000577200	ENST00000584558		TCGA	LD	STAD	TCGA-HU-A4G3-01A	LLGL2	chr17	73529786	+	ITGB4	chr17	73748255	+
intron-5UTR	ENST00000541509	ENST00000453658		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000541509	ENST00000377259		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000541509	ENST00000377245		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000541509	ENST00000348208		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000541509	ENST00000265384		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000541509	ENST00000535702		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000541509	ENST00000539225		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-intron	ENST00000541509	ENST00000498204		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000453658		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000377259		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000377245		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000348208		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000265384		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000535702		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-5UTR	ENST00000265382	ENST00000539225		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5UTR-intron	ENST00000265382	ENST00000498204		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000453658		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000377259		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000377245		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000348208		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000265384		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000535702		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-5UTR	ENST00000474356	ENST00000539225		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
intron-intron	ENST00000474356	ENST00000498204		TCGA	LD	STAD	TCGA-HU-A4G3-01A	PIP5K1B	chr9	71357573	+	TJP2	chr9	71827464	+
5CDS-intron	ENST00000264645	ENST00000494757		TCGA	LD	STAD	TCGA-HU-A4G6-01A	CASC3	chr17	38297860	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000264645	ENST00000323571		TCGA	LD	STAD	TCGA-HU-A4G6-01A	CASC3	chr17	38297860	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000264645	ENST00000585043		TCGA	LD	STAD	TCGA-HU-A4G6-01A	CASC3	chr17	38297860	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000264645	ENST00000394103		TCGA	LD	STAD	TCGA-HU-A4G6-01A	CASC3	chr17	38297860	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000264645	ENST00000536600		TCGA	LD	STAD	TCGA-HU-A4G6-01A	CASC3	chr17	38297860	+	WIPF2	chr17	38412643	+
5CDS-5UTR	ENST00000264645	ENST00000583130		TCGA	LD	STAD	TCGA-HU-A4G6-01A	CASC3	chr17	38297860	+	WIPF2	chr17	38412643	+
Frame-shit	ENST00000370501	ENST00000439951		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
Frame-shit	ENST00000370501	ENST00000313733		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
Frame-shit	ENST00000370501	ENST00000358053		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
5CDS-intron	ENST00000370501	ENST00000471817		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
intron-3CDS	ENST00000482259	ENST00000439951		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
intron-3CDS	ENST00000482259	ENST00000313733		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
intron-3CDS	ENST00000482259	ENST00000358053		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
intron-intron	ENST00000482259	ENST00000471817		TCGA	LD	STAD	TCGA-HU-A4GF-01A	NTSR1	chr20	61341273	+	OSBPL2	chr20	60854213	+
In-frame	ENST00000345662	ENST00000295065		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
In-frame	ENST00000345662	ENST00000379383		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
In-frame	ENST00000345662	ENST00000404530		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5CDS-5UTR	ENST00000345662	ENST00000490459		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5CDS-5UTR	ENST00000345662	ENST00000426310		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5CDS-5UTR	ENST00000345662	ENST00000407893		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
In-frame	ENST00000315285	ENST00000295065		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
In-frame	ENST00000315285	ENST00000379383		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
In-frame	ENST00000315285	ENST00000404530		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5CDS-5UTR	ENST00000315285	ENST00000490459		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5CDS-5UTR	ENST00000315285	ENST00000426310		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5CDS-5UTR	ENST00000315285	ENST00000407893		TCGA	LD	STAD	TCGA-HU-A4GF-01A	SPAST	chr2	32289315	+	MEMO1	chr2	32168452	-
5UTR-5UTR	ENST00000357681	ENST00000237654		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000357681	ENST00000537948		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000357681	ENST00000504697		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-5UTR	ENST00000391954	ENST00000237654		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000391954	ENST00000537948		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000391954	ENST00000504697		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-5UTR	ENST00000367218	ENST00000237654		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000367218	ENST00000537948		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000367218	ENST00000504697		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-5UTR	ENST00000367219	ENST00000237654		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000367219	ENST00000537948		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
5UTR-intron	ENST00000367219	ENST00000504697		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
intron-5UTR	ENST00000341360	ENST00000237654		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
intron-intron	ENST00000341360	ENST00000537948		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
intron-intron	ENST00000341360	ENST00000504697		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
intron-5UTR	ENST00000466407	ENST00000237654		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
intron-intron	ENST00000466407	ENST00000537948		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
intron-intron	ENST00000466407	ENST00000504697		TCGA	LD	STAD	TCGA-HU-A4GH-01A	ATP2B4	chr1	203596347	+	CCNI	chr4	77987558	-
In-frame	ENST00000535206	ENST00000251849		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000535206	ENST00000442415		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000535206	ENST00000534997		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000535206	ENST00000542177		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000379731	ENST00000251849		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000379731	ENST00000442415		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000379731	ENST00000534997		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
In-frame	ENST00000379731	ENST00000542177		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
intron-3CDS	ENST00000541851	ENST00000251849		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
intron-3CDS	ENST00000541851	ENST00000442415		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
intron-3CDS	ENST00000541851	ENST00000534997		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
intron-3CDS	ENST00000541851	ENST00000542177		TCGA	LD	STAD	TCGA-HU-A4GH-01A	B4GALT1	chr9	33166756	-	RAF1	chr3	12641914	-
5CDS-intron	ENST00000328735	ENST00000490220		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000328735	ENST00000398600		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000328735	ENST00000398598		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000328735	ENST00000455164		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000328735	ENST00000288383		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000330333	ENST00000490220		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000330333	ENST00000398600		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000330333	ENST00000398598		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000330333	ENST00000455164		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000330333	ENST00000288383		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000347667	ENST00000490220		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000347667	ENST00000398600		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000347667	ENST00000398598		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000347667	ENST00000455164		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
5CDS-intron	ENST00000347667	ENST00000288383		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
3UTR-intron	ENST00000466122	ENST00000490220		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
3UTR-intron	ENST00000466122	ENST00000398600		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
3UTR-intron	ENST00000466122	ENST00000398598		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
3UTR-intron	ENST00000466122	ENST00000455164		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
3UTR-intron	ENST00000466122	ENST00000288383		TCGA	LD	STAD	TCGA-HU-A4GH-01A	BACE2	chr21	42609656	+	MX1	chr21	42807764	+
Frame-shit	ENST00000264613	ENST00000473414		TCGA	LD	STAD	TCGA-HU-A4GH-01A	CP	chr3	148895627	-	COMMD2	chr3	149459505	-
intron-3CDS	ENST00000462336	ENST00000473414		TCGA	LD	STAD	TCGA-HU-A4GH-01A	CP	chr3	148895627	-	COMMD2	chr3	149459505	-
5UTR-3CDS	ENST00000442713	ENST00000285039		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000442713	ENST00000324581		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000442713	ENST00000592688		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000442713	ENST00000587895		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-3CDS	ENST00000269445	ENST00000285039		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000269445	ENST00000324581		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000269445	ENST00000592688		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000269445	ENST00000587895		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-3CDS	ENST00000584977	ENST00000285039		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000584977	ENST00000324581		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000584977	ENST00000592688		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5UTR-intron	ENST00000584977	ENST00000587895		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
intron-3CDS	ENST00000578396	ENST00000285039		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
intron-intron	ENST00000578396	ENST00000324581		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
intron-intron	ENST00000578396	ENST00000592688		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
intron-intron	ENST00000578396	ENST00000587895		TCGA	LD	STAD	TCGA-HU-A4GH-01A	DYM	chr18	46986768	-	MYO5B	chr18	47581748	-
5CDS-5UTR	ENST00000294304	ENST00000306960		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	CHRM1	chr11	62678650	-
intron-5UTR	ENST00000529481	ENST00000306960		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	CHRM1	chr11	62678650	-
5CDS-intron	ENST00000294304	ENST00000360421		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294304	ENST00000377871		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294304	ENST00000458333		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294304	ENST00000421062		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
5CDS-intron	ENST00000294304	ENST00000537349		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
intron-intron	ENST00000529481	ENST00000360421		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
intron-intron	ENST00000529481	ENST00000377871		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
intron-intron	ENST00000529481	ENST00000458333		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
intron-intron	ENST00000529481	ENST00000421062		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
intron-intron	ENST00000529481	ENST00000537349		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LRP5	chr11	68181480	+	SLC22A6	chr11	62703958	-
Frame-shit	ENST00000505658	ENST00000006658		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000505658	ENST00000356488		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000505658	ENST00000393244		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5CDS-3UTR	ENST00000505658	ENST00000511937		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000393227	ENST00000006658		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000393227	ENST00000356488		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000393227	ENST00000393244		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5CDS-3UTR	ENST00000393227	ENST00000511937		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000311571	ENST00000006658		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000311571	ENST00000356488		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000311571	ENST00000393244		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5CDS-3UTR	ENST00000311571	ENST00000511937		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000240304	ENST00000006658		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000240304	ENST00000356488		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
Frame-shit	ENST00000240304	ENST00000393244		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5CDS-3UTR	ENST00000240304	ENST00000511937		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5UTR-3CDS	ENST00000544170	ENST00000006658		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5UTR-3CDS	ENST00000544170	ENST00000356488		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5UTR-3CDS	ENST00000544170	ENST00000393244		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
5UTR-3UTR	ENST00000544170	ENST00000511937		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
intron-3CDS	ENST00000503798	ENST00000006658		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
intron-3CDS	ENST00000503798	ENST00000356488		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
intron-3CDS	ENST00000503798	ENST00000393244		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
intron-3UTR	ENST00000503798	ENST00000511937		TCGA	LD	STAD	TCGA-HU-A4GH-01A	LUC7L3	chr17	48797192	+	SPATA20	chr17	48631612	+
In-frame	ENST00000348657	ENST00000263245		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
In-frame	ENST00000348657	ENST00000429508		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
In-frame	ENST00000348657	ENST00000437119		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
In-frame	ENST00000252115	ENST00000263245		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
In-frame	ENST00000252115	ENST00000429508		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
In-frame	ENST00000252115	ENST00000437119		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
intron-3CDS	ENST00000339677	ENST00000263245		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
intron-3CDS	ENST00000339677	ENST00000429508		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
intron-3CDS	ENST00000339677	ENST00000437119		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
intron-3CDS	ENST00000451060	ENST00000263245		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
intron-3CDS	ENST00000451060	ENST00000429508		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
intron-3CDS	ENST00000451060	ENST00000437119		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
5UTR-3CDS	ENST00000491021	ENST00000263245		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
5UTR-3CDS	ENST00000491021	ENST00000429508		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
5UTR-3CDS	ENST00000491021	ENST00000437119		TCGA	LD	STAD	TCGA-HU-A4GH-01A	POLDIP3	chr22	42983512	-	ARFGAP3	chr22	43204896	-
5CDS-intron	ENST00000261712	ENST00000333942		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000358365		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000583994		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000545287		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000354266		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000394692		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000581094		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000261712	ENST00000580976		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000333942		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000358365		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000583994		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000545287		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000354266		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000394692		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000581094		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000457654	ENST00000580976		TCGA	LD	STAD	TCGA-HU-A4GH-01A	PSMD11	chr17	30771632	+	RHOT1	chr17	30580104	+
Frame-shit	ENST00000402198	ENST00000383836		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
Frame-shit	ENST00000402198	ENST00000360413		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
5CDS-5UTR	ENST00000402198	ENST00000433332		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
5UTR-3CDS	ENST00000402466	ENST00000383836		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
5UTR-3CDS	ENST00000402466	ENST00000360413		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
5UTR-5UTR	ENST00000402466	ENST00000433332		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
Frame-shit	ENST00000406341	ENST00000383836		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
Frame-shit	ENST00000406341	ENST00000360413		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
5CDS-5UTR	ENST00000406341	ENST00000433332		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
Frame-shit	ENST00000407969	ENST00000383836		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
Frame-shit	ENST00000407969	ENST00000360413		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
5CDS-5UTR	ENST00000407969	ENST00000433332		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
intron-3CDS	ENST00000302463	ENST00000383836		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
intron-3CDS	ENST00000302463	ENST00000360413		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
intron-5UTR	ENST00000302463	ENST00000433332		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
intron-3CDS	ENST00000488236	ENST00000383836		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
intron-3CDS	ENST00000488236	ENST00000360413		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
intron-5UTR	ENST00000488236	ENST00000433332		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SETD5	chr3	9470693	+	SRGAP3	chr3	9106265	-
In-frame	ENST00000262461	ENST00000481195		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SLC12A2	chr5	127420402	+	PPP2CA	chr5	133537712	-
5CDS-intron	ENST00000262461	ENST00000231504		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SLC12A2	chr5	127420402	+	PPP2CA	chr5	133537712	-
In-frame	ENST00000343225	ENST00000481195		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SLC12A2	chr5	127420402	+	PPP2CA	chr5	133537712	-
5CDS-intron	ENST00000343225	ENST00000231504		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SLC12A2	chr5	127420402	+	PPP2CA	chr5	133537712	-
intron-3CDS	ENST00000507791	ENST00000481195		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SLC12A2	chr5	127420402	+	PPP2CA	chr5	133537712	-
intron-intron	ENST00000507791	ENST00000231504		TCGA	LD	STAD	TCGA-HU-A4GH-01A	SLC12A2	chr5	127420402	+	PPP2CA	chr5	133537712	-
5UTR-3CDS	ENST00000478754	ENST00000403712		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-3CDS	ENST00000478754	ENST00000405430		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-3CDS	ENST00000478754	ENST00000356150		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-3CDS	ENST00000478754	ENST00000403658		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-5UTR	ENST00000478754	ENST00000468321		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-intron	ENST00000478754	ENST00000402632		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-intron	ENST00000478754	ENST00000415006		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5UTR-intron	ENST00000478754	ENST00000403657		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000398659	ENST00000403712		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000398659	ENST00000405430		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000398659	ENST00000356150		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000398659	ENST00000403658		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-5UTR	ENST00000398659	ENST00000468321		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000398659	ENST00000402632		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000398659	ENST00000415006		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000398659	ENST00000403657		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000382125	ENST00000403712		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000382125	ENST00000405430		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000382125	ENST00000356150		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000382125	ENST00000403658		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-5UTR	ENST00000382125	ENST00000468321		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000382125	ENST00000402632		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000382125	ENST00000415006		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000382125	ENST00000403657		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000443925	ENST00000403712		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000443925	ENST00000405430		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000443925	ENST00000356150		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
In-frame	ENST00000443925	ENST00000403658		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-5UTR	ENST00000443925	ENST00000468321		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000443925	ENST00000402632		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000443925	ENST00000415006		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
5CDS-intron	ENST00000443925	ENST00000403657		TCGA	LD	STAD	TCGA-HU-A4GT-01A	TSSC1	chr2	3217920	-	SH3YL1	chr2	234272	-
intron-intron	ENST00000548961	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000548961	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000427314	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000427314	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000312377	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000312377	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000434422	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000434422	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000454520	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000454520	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000551016	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000551016	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000547905	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
5UTR-intron	ENST00000547905	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000547061	ENST00000320634		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
intron-intron	ENST00000547061	ENST00000550890		TCGA	LD	STAD	TCGA-HU-A4GU-01A	RACGAP1	chr12	50419181	-	FAIM2	chr12	50297765	-
Frame-shit	ENST00000392328	ENST00000392329		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
In-frame	ENST00000392328	ENST00000322522		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
In-frame	ENST00000392328	ENST00000541441		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
5CDS-intron	ENST00000392328	ENST00000417336		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
Frame-shit	ENST00000281416	ENST00000392329		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
In-frame	ENST00000281416	ENST00000322522		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
In-frame	ENST00000281416	ENST00000541441		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
5CDS-intron	ENST00000281416	ENST00000417336		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
Frame-shit	ENST00000535751	ENST00000392329		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
In-frame	ENST00000535751	ENST00000322522		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
In-frame	ENST00000535751	ENST00000541441		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
5CDS-intron	ENST00000535751	ENST00000417336		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
Frame-shit	ENST00000489793	ENST00000392329		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
Frame-shit	ENST00000489793	ENST00000322522		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
Frame-shit	ENST00000489793	ENST00000541441		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
5CDS-intron	ENST00000489793	ENST00000417336		TCGA	LD	STAD	TCGA-HU-A4H0-01A	MFSD6	chr2	191334581	+	INPP1	chr2	191235631	+
Frame-shit	ENST00000376542	ENST00000472091		TCGA	LD	STAD	TCGA-HU-A4H5-01A	ABHD12	chr20	25371149	-	ERVFRD-1	chr6	11103995	-
Frame-shit	ENST00000376542	ENST00000542862		TCGA	LD	STAD	TCGA-HU-A4H5-01A	ABHD12	chr20	25371149	-	ERVFRD-1	chr6	11103995	-
Frame-shit	ENST00000339157	ENST00000472091		TCGA	LD	STAD	TCGA-HU-A4H5-01A	ABHD12	chr20	25371149	-	ERVFRD-1	chr6	11103995	-
Frame-shit	ENST00000339157	ENST00000542862		TCGA	LD	STAD	TCGA-HU-A4H5-01A	ABHD12	chr20	25371149	-	ERVFRD-1	chr6	11103995	-
intron-3CDS	ENST00000481556	ENST00000472091		TCGA	LD	STAD	TCGA-HU-A4H5-01A	ABHD12	chr20	25371149	-	ERVFRD-1	chr6	11103995	-
intron-3CDS	ENST00000481556	ENST00000542862		TCGA	LD	STAD	TCGA-HU-A4H5-01A	ABHD12	chr20	25371149	-	ERVFRD-1	chr6	11103995	-
5CDS-5UTR	ENST00000598205	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000598205	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000598205	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000598205	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000598205	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000598205	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000598205	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-5UTR	ENST00000376970	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000376970	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000376970	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000376970	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000376970	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000376970	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000376970	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-5UTR	ENST00000425460	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000425460	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000425460	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000425460	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000425460	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000425460	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000425460	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-5UTR	ENST00000440075	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000440075	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000440075	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000440075	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000440075	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000440075	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000440075	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-5UTR	ENST00000601313	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000601313	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000601313	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000601313	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000601313	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000601313	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000601313	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-5UTR	ENST00000262269	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000262269	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000262269	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000262269	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000262269	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000262269	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000262269	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-5UTR	ENST00000596571	ENST00000542413		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-3UTR	ENST00000596571	ENST00000600978		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000596571	ENST00000598168		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000596571	ENST00000411902		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000596571	ENST00000253727		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000596571	ENST00000599105		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
5CDS-intron	ENST00000596571	ENST00000593926		TCGA	LD	STAD	TCGA-HU-A4H5-01A	MYH14	chr19	50721028	+	NR1H2	chr19	50841259	+
Frame-shit	ENST00000254108	ENST00000568335		TCGA	LD	STAD	TCGA-HU-A4HB-01A	FUS	chr16	31196500	+	TMEM114	chr16	8622226	-
Frame-shit	ENST00000380244	ENST00000568335		TCGA	LD	STAD	TCGA-HU-A4HB-01A	FUS	chr16	31196500	+	TMEM114	chr16	8622226	-
Frame-shit	ENST00000568685	ENST00000568335		TCGA	LD	STAD	TCGA-HU-A4HB-01A	FUS	chr16	31196500	+	TMEM114	chr16	8622226	-
intron-3CDS	ENST00000474990	ENST00000568335		TCGA	LD	STAD	TCGA-HU-A4HB-01A	FUS	chr16	31196500	+	TMEM114	chr16	8622226	-
In-frame	ENST00000285238	ENST00000221403		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000285238	ENST00000523250		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000285238	ENST00000522614		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000515707	ENST00000221403		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000515707	ENST00000523250		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000515707	ENST00000522614		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000427699	ENST00000221403		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000427699	ENST00000523250		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
In-frame	ENST00000427699	ENST00000522614		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
intron-3CDS	ENST00000510891	ENST00000221403		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
intron-3CDS	ENST00000510891	ENST00000523250		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
intron-3CDS	ENST00000510891	ENST00000522614		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ABCC3	chr17	48712342	+	DHDH	chr19	49438257	+
Frame-shit	ENST00000278520	ENST00000393223		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000278520	ENST00000346299		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000278520	ENST00000409459		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000278520	ENST00000352297		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
5CDS-5UTR	ENST00000278520	ENST00000484818		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000542662	ENST00000393223		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000542662	ENST00000346299		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000542662	ENST00000409459		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
Frame-shit	ENST00000542662	ENST00000352297		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
5CDS-5UTR	ENST00000542662	ENST00000484818		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
In-frame	ENST00000423339	ENST00000393223		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
In-frame	ENST00000423339	ENST00000346299		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
In-frame	ENST00000423339	ENST00000409459		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
In-frame	ENST00000423339	ENST00000352297		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
5CDS-5UTR	ENST00000423339	ENST00000484818		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
intron-3CDS	ENST00000525786	ENST00000393223		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
intron-3CDS	ENST00000525786	ENST00000346299		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
intron-3CDS	ENST00000525786	ENST00000409459		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
intron-3CDS	ENST00000525786	ENST00000352297		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
intron-5UTR	ENST00000525786	ENST00000484818		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CCDC82	chr11	96104177	-	MTMR2	chr11	95583913	-
5CDS-intron	ENST00000360325	ENST00000313135		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CLDN7	chr17	7164140	-	UTS2R	chr17	80332119	+
5CDS-intron	ENST00000538261	ENST00000313135		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CLDN7	chr17	7164140	-	UTS2R	chr17	80332119	+
5CDS-intron	ENST00000397317	ENST00000313135		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CLDN7	chr17	7164140	-	UTS2R	chr17	80332119	+
5CDS-intron	ENST00000571881	ENST00000313135		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CLDN7	chr17	7164140	-	UTS2R	chr17	80332119	+
intron-intron	ENST00000573745	ENST00000313135		TCGA	LD	STAD	TCGA-HU-A4HD-01A	CLDN7	chr17	7164140	-	UTS2R	chr17	80332119	+
Frame-shit	ENST00000254260	ENST00000333952		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
Frame-shit	ENST00000254260	ENST00000598513		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
Frame-shit	ENST00000254260	ENST00000599012		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
Frame-shit	ENST00000254260	ENST00000594681		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
Frame-shit	ENST00000254260	ENST00000598806		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
Frame-shit	ENST00000254260	ENST00000601828		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
In-frame	ENST00000254260	ENST00000601413		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5CDS-intron	ENST00000254260	ENST00000595293		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000333952		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000598513		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000599012		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000594681		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000598806		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000601828		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-3CDS	ENST00000400226	ENST00000601413		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5UTR-intron	ENST00000400226	ENST00000595293		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000333952		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000598513		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000599012		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000594681		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000598806		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000601828		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-3CDS	ENST00000588683	ENST00000601413		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
intron-intron	ENST00000588683	ENST00000595293		TCGA	LD	STAD	TCGA-HU-A4HD-01A	RHPN2	chr19	33535155	-	ZNF677	chr19	53747150	-
5CDS-intron	ENST00000278590	ENST00000324225		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000278590	ENST00000431081		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000278590	ENST00000530948		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000278590	ENST00000532062		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000528673	ENST00000324225		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000528673	ENST00000431081		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000528673	ENST00000530948		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000528673	ENST00000532062		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000453089	ENST00000324225		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000453089	ENST00000431081		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000453089	ENST00000530948		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5CDS-intron	ENST00000453089	ENST00000532062		TCGA	LD	STAD	TCGA-HU-A4HD-01A	ZC3H12C	chr11	110036402	+	SIDT2	chr11	117056787	+
5UTR-intron	ENST00000254667	ENST00000427662		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
5UTR-intron	ENST00000254667	ENST00000369774		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
5UTR-intron	ENST00000254667	ENST00000355946		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
5UTR-intron	ENST00000254667	ENST00000315994		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
5UTR-intron	ENST00000254667	ENST00000540321		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
5UTR-intron	ENST00000254667	ENST00000538130		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000419012	ENST00000427662		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000419012	ENST00000369774		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000419012	ENST00000355946		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000419012	ENST00000315994		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000419012	ENST00000540321		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000419012	ENST00000538130		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000430713	ENST00000427662		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000430713	ENST00000369774		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000430713	ENST00000355946		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000430713	ENST00000315994		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000430713	ENST00000540321		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000430713	ENST00000538130		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000471218	ENST00000427662		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000471218	ENST00000369774		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000471218	ENST00000355946		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000471218	ENST00000315994		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000471218	ENST00000540321		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000471218	ENST00000538130		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000306042	ENST00000427662		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000306042	ENST00000369774		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000306042	ENST00000355946		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000306042	ENST00000315994		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000306042	ENST00000540321		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
intron-intron	ENST00000306042	ENST00000538130		TCGA	LD	STAD	TCGA-IN-7806-01A	PTPRE	chr10	129705573	+	SH3PXD2A	chr10	105561120	-
5CDS-intron	ENST00000590923	ENST00000592864		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000590923	ENST00000360228		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000590923	ENST00000573710		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000590923	ENST00000574822		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000250244	ENST00000592864		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000250244	ENST00000360228		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000250244	ENST00000573710		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-intron	ENST00000250244	ENST00000574822		TCGA	LD	STAD	TCGA-IN-A6RI-01A	AP1M2	chr19	10694282	-	CACNA1A	chr19	13566003	-
5CDS-3UTR	ENST00000370397	ENST00000465198		TCGA	LD	STAD	TCGA-IN-A6RL-01A	CHUK	chr10	101989185	-	RHOQ	chr2	46803226	+
5CDS-3UTR	ENST00000370397	ENST00000238738		TCGA	LD	STAD	TCGA-IN-A6RL-01A	CHUK	chr10	101989185	-	RHOQ	chr2	46803226	+
intron-3UTR	ENST00000590930	ENST00000465198		TCGA	LD	STAD	TCGA-IN-A6RL-01A	CHUK	chr10	101989185	-	RHOQ	chr2	46803226	+
intron-3UTR	ENST00000590930	ENST00000238738		TCGA	LD	STAD	TCGA-IN-A6RL-01A	CHUK	chr10	101989185	-	RHOQ	chr2	46803226	+
5UTR-3CDS	ENST00000371828	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371828	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371828	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371828	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371828	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371828	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371828	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371828	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371802	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371802	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371802	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371802	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371802	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371802	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371802	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371802	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371856	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371856	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371856	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000371856	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371856	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371856	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371856	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000371856	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000347458	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000347458	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000347458	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000347458	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000347458	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000347458	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000347458	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000347458	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000340954	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000340954	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000340954	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000340954	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000340954	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000340954	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000340954	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000340954	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371792	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371792	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371792	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-3CDS	ENST00000371792	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371792	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371792	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371792	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
intron-intron	ENST00000371792	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000360426	ENST00000217074		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000360426	ENST00000255136		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000360426	ENST00000537323		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-3CDS	ENST00000360426	ENST00000217073		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000360426	ENST00000490798		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000360426	ENST00000372824		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000360426	ENST00000372819		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
5UTR-intron	ENST00000360426	ENST00000217075		TCGA	LD	STAD	TCGA-IN-A6RL-01A	STAU1	chr20	47790732	-	PABPC1L	chr20	43545397	+
Frame-shit	ENST00000369799	ENST00000369812		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000369799	ENST00000256593		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000369799	ENST00000369813		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
5CDS-3UTR	ENST00000369799	ENST00000492718		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
3UTR-3CDS	ENST00000475081	ENST00000369812		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
3UTR-3CDS	ENST00000475081	ENST00000256593		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
3UTR-3CDS	ENST00000475081	ENST00000369813		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
3UTR-3UTR	ENST00000475081	ENST00000492718		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000359172	ENST00000369812		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000359172	ENST00000256593		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000359172	ENST00000369813		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
5CDS-3UTR	ENST00000359172	ENST00000492718		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000393614	ENST00000369812		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000393614	ENST00000256593		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
Frame-shit	ENST00000393614	ENST00000369813		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
5CDS-3UTR	ENST00000393614	ENST00000492718		TCGA	LD	STAD	TCGA-IN-A6RN-01A	AHCYL1	chr1	110551767	+	GSTM5	chr1	110257569	+
intron-3CDS	ENST00000252577	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000252577	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000252577	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000360315	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000360315	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000360315	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000537887	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000537887	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000537887	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000404158	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000404158	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000404158	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000358713	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000358713	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000358713	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000429563	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000429563	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000429563	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000473184	ENST00000309428		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-3CDS	ENST00000473184	ENST00000585894		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
intron-5UTR	ENST00000473184	ENST00000543197		TCGA	LD	STAD	TCGA-IN-A6RO-01A	GATAD2A	chr19	19516828	+	FAM134C	chr17	40738909	-
Frame-shit	ENST00000344293	ENST00000404771		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000372440		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000372443		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000286628		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000286627		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000354353		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000404857		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
Frame-shit	ENST00000344293	ENST00000406533		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
5CDS-intron	ENST00000344293	ENST00000484507		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
5CDS-intron	ENST00000344293	ENST00000481070		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
5CDS-intron	ENST00000344293	ENST00000480683		TCGA	LD	STAD	TCGA-IN-A6RO-01A	TAF3	chr10	7866523	+	KCNMA1	chr10	79163781	-
intron-3UTR	ENST00000394126	ENST00000394149		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394126	ENST00000225474		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394126	ENST00000331769		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-intron	ENST00000394126	ENST00000394148		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394126	ENST00000577675		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000356271	ENST00000394149		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000356271	ENST00000225474		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000356271	ENST00000331769		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-intron	ENST00000356271	ENST00000394148		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000356271	ENST00000577675		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394128	ENST00000394149		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394128	ENST00000225474		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394128	ENST00000331769		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-intron	ENST00000394128	ENST00000394148		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394128	ENST00000577675		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394127	ENST00000394149		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394127	ENST00000225474		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394127	ENST00000331769		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-intron	ENST00000394127	ENST00000394148		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000394127	ENST00000577675		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000501516	ENST00000394149		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000501516	ENST00000225474		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000501516	ENST00000331769		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-intron	ENST00000501516	ENST00000394148		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000501516	ENST00000577675		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000479829	ENST00000394149		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000479829	ENST00000225474		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000479829	ENST00000331769		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-intron	ENST00000479829	ENST00000394148		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
intron-3UTR	ENST00000479829	ENST00000577675		TCGA	LD	STAD	TCGA-IN-A6RS-01A	MED24	chr17	38175832	-	CSF3	chr17	38173664	+
Frame-shit	ENST00000372409	ENST00000372523		TCGA	LD	STAD	TCGA-IN-AB1V-01A	PCIF1	chr20	44574722	+	ZSWIM1	chr20	44512094	+
In-frame	ENST00000372409	ENST00000372520		TCGA	LD	STAD	TCGA-IN-AB1V-01A	PCIF1	chr20	44574722	+	ZSWIM1	chr20	44512094	+
3UTR-3CDS	ENST00000479348	ENST00000372523		TCGA	LD	STAD	TCGA-IN-AB1V-01A	PCIF1	chr20	44574722	+	ZSWIM1	chr20	44512094	+
3UTR-3CDS	ENST00000479348	ENST00000372520		TCGA	LD	STAD	TCGA-IN-AB1V-01A	PCIF1	chr20	44574722	+	ZSWIM1	chr20	44512094	+
intron-3CDS	ENST00000330978	ENST00000189978		TCGA	LD	STAD	TCGA-IN-AB1X-01A	BOLA2	chr16	29455719	-	MUSK	chr9	113496531	+
intron-3CDS	ENST00000330978	ENST00000374448		TCGA	LD	STAD	TCGA-IN-AB1X-01A	BOLA2	chr16	29455719	-	MUSK	chr9	113496531	+
intron-3CDS	ENST00000330978	ENST00000416899		TCGA	LD	STAD	TCGA-IN-AB1X-01A	BOLA2	chr16	29455719	-	MUSK	chr9	113496531	+
intron-intron	ENST00000330978	ENST00000374440		TCGA	LD	STAD	TCGA-IN-AB1X-01A	BOLA2	chr16	29455719	-	MUSK	chr9	113496531	+
intron-intron	ENST00000330978	ENST00000374439		TCGA	LD	STAD	TCGA-IN-AB1X-01A	BOLA2	chr16	29455719	-	MUSK	chr9	113496531	+
intron-intron	ENST00000330978	ENST00000374438		TCGA	LD	STAD	TCGA-IN-AB1X-01A	BOLA2	chr16	29455719	-	MUSK	chr9	113496531	+
Frame-shit	ENST00000606080	ENST00000298705		TCGA	LD	STAD	TCGA-IN-AB1X-01A	FRK	chr6	116325040	-	PPP1R36	chr14	65031469	+
intron-3CDS	ENST00000538210	ENST00000298705		TCGA	LD	STAD	TCGA-IN-AB1X-01A	FRK	chr6	116325040	-	PPP1R36	chr14	65031469	+
5CDS-5UTR	ENST00000333957	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000333957	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000333957	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000446597	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000446597	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000446597	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000536386	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000536386	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000536386	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000396028	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000396028	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000396028	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000542676	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000542676	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000542676	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000544930	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000544930	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000544930	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000545552	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000545552	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5CDS-5UTR	ENST00000545552	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
intron-5UTR	ENST00000540703	ENST00000539393		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
intron-5UTR	ENST00000540703	ENST00000240652		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
intron-5UTR	ENST00000540703	ENST00000542023		TCGA	LD	STAD	TCGA-IP-7968-01A	C2CD5	chr12	22659645	-	IAPP	chr12	21526271	+
5UTR-3CDS	ENST00000539409	ENST00000343028		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-intron	ENST00000539409	ENST00000542667		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-3CDS	ENST00000337682	ENST00000343028		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-intron	ENST00000337682	ENST00000542667		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
intron-3CDS	ENST00000454658	ENST00000343028		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
intron-intron	ENST00000454658	ENST00000542667		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-3CDS	ENST00000395766	ENST00000343028		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-intron	ENST00000395766	ENST00000542667		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-3CDS	ENST00000542983	ENST00000343028		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-intron	ENST00000542983	ENST00000542667		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-3CDS	ENST00000536836	ENST00000343028		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5UTR-intron	ENST00000536836	ENST00000542667		TCGA	LD	STAD	TCGA-IP-7968-01A	FAM60A	chr12	31478958	-	TM7SF3	chr12	27156323	-
5CDS-5UTR	ENST00000081029	ENST00000545334		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000081029	ENST00000537927		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000081029	ENST00000318304		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000081029	ENST00000535047		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000081029	ENST00000542629		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000081029	ENST00000228425		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000081029	ENST00000541633		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000538315	ENST00000545334		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000538315	ENST00000537927		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000538315	ENST00000318304		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000538315	ENST00000535047		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000538315	ENST00000542629		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-5UTR	ENST00000538315	ENST00000228425		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
5CDS-3UTR	ENST00000538315	ENST00000541633		TCGA	LD	STAD	TCGA-IP-7968-01A	MRPS35	chr12	27863888	+	PPFIBP1	chr12	27731085	+
Frame-shit	ENST00000588649	ENST00000264560		TCGA	LD	STAD	TCGA-IP-7968-01A	POLRMT	chr19	619958	-	PALM	chr19	736019	+
Frame-shit	ENST00000588649	ENST00000338448		TCGA	LD	STAD	TCGA-IP-7968-01A	POLRMT	chr19	619958	-	PALM	chr19	736019	+
5CDS-3UTR	ENST00000588649	ENST00000593172		TCGA	LD	STAD	TCGA-IP-7968-01A	POLRMT	chr19	619958	-	PALM	chr19	736019	+
In-frame	ENST00000487861	ENST00000315266		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000487861	ENST00000478722		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487861	ENST00000459628		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487861	ENST00000543237		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487861	ENST00000305960		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000487861	ENST00000544752		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000471583	ENST00000315266		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000471583	ENST00000478722		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000471583	ENST00000459628		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000471583	ENST00000543237		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000471583	ENST00000305960		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000471583	ENST00000544752		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000487270	ENST00000315266		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000487270	ENST00000478722		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487270	ENST00000459628		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487270	ENST00000543237		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000487270	ENST00000305960		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000487270	ENST00000544752		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000488612	ENST00000315266		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000488612	ENST00000478722		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000488612	ENST00000459628		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000488612	ENST00000543237		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000488612	ENST00000305960		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000488612	ENST00000544752		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000390683	ENST00000315266		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
In-frame	ENST00000390683	ENST00000478722		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000390683	ENST00000459628		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000390683	ENST00000543237		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-intron	ENST00000390683	ENST00000305960		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
5CDS-3UTR	ENST00000390683	ENST00000544752		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-3CDS	ENST00000469165	ENST00000315266		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-3CDS	ENST00000469165	ENST00000478722		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-intron	ENST00000469165	ENST00000459628		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-intron	ENST00000469165	ENST00000543237		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-intron	ENST00000469165	ENST00000305960		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
3UTR-3UTR	ENST00000469165	ENST00000544752		TCGA	LD	STAD	TCGA-IP-7968-01A	RAD51B	chr14	68353921	+	GPHN	chr14	67626132	+
Frame-shit	ENST00000356415	ENST00000380822		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000356415	ENST00000502819		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000356415	ENST00000380818		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-intron	ENST00000356415	ENST00000512561		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000356415	ENST00000506736		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000356415	ENST00000328663		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000356415	ENST00000217893		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
Frame-shit	ENST00000436150	ENST00000380822		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000436150	ENST00000502819		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000436150	ENST00000380818		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-intron	ENST00000436150	ENST00000512561		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000436150	ENST00000506736		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000436150	ENST00000328663		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000436150	ENST00000217893		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
Frame-shit	ENST00000369709	ENST00000380822		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000369709	ENST00000502819		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000369709	ENST00000380818		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-intron	ENST00000369709	ENST00000512561		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000369709	ENST00000506736		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000369709	ENST00000328663		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000369709	ENST00000217893		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
Frame-shit	ENST00000545460	ENST00000380822		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000545460	ENST00000502819		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000545460	ENST00000380818		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-intron	ENST00000545460	ENST00000512561		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000545460	ENST00000506736		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000545460	ENST00000328663		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
5CDS-5UTR	ENST00000545460	ENST00000217893		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-3CDS	ENST00000494982	ENST00000380822		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-5UTR	ENST00000494982	ENST00000502819		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-5UTR	ENST00000494982	ENST00000380818		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-intron	ENST00000494982	ENST00000512561		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-5UTR	ENST00000494982	ENST00000506736		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-5UTR	ENST00000494982	ENST00000328663		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
3UTR-5UTR	ENST00000494982	ENST00000217893		TCGA	LD	STAD	TCGA-KB-A6F7-01A	RAP1A	chr1	112233986	+	TAF9	chr5	68662422	-
In-frame	ENST00000524189	ENST00000373030		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
In-frame	ENST00000524189	ENST00000373039		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
5CDS-intron	ENST00000524189	ENST00000471199		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
In-frame	ENST00000521515	ENST00000373030		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
In-frame	ENST00000521515	ENST00000373039		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
5CDS-intron	ENST00000521515	ENST00000471199		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
intron-3CDS	ENST00000404075	ENST00000373030		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
intron-3CDS	ENST00000404075	ENST00000373039		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
intron-intron	ENST00000404075	ENST00000471199		TCGA	LD	STAD	TCGA-KB-A93H-01A	KIF13B	chr8	29120497	-	IFT52	chr20	42247580	+
3UTR-3CDS	ENST00000491143	ENST00000356462		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-3CDS	ENST00000491143	ENST00000400345		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-intron	ENST00000491143	ENST00000589054		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000256832		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000382850		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000256830		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-3UTR	ENST00000491143	ENST00000588516		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000456986		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000435432		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000357895		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-5UTR	ENST00000491143	ENST00000586263		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-intron	ENST00000491143	ENST00000456173		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
3UTR-intron	ENST00000491143	ENST00000431212		TCGA	LD	STAD	TCGA-KB-A93H-01A	ONECUT2	chr18	55146080	+	NEDD4L	chr18	55833020	+
intron-3CDS	ENST00000322191	ENST00000370449		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000322191	ENST00000370434		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000322191	ENST00000496621		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-3CDS	ENST00000342512	ENST00000370449		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000342512	ENST00000370434		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000342512	ENST00000496621		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-3CDS	ENST00000371774	ENST00000370449		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000371774	ENST00000370434		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000371774	ENST00000496621		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
In-frame	ENST00000307534	ENST00000370449		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
5CDS-intron	ENST00000307534	ENST00000370434		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
5CDS-intron	ENST00000307534	ENST00000496621		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-3CDS	ENST00000488482	ENST00000370449		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000488482	ENST00000370434		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-intron	ENST00000488482	ENST00000496621		TCGA	LD	STAD	TCGA-KB-A93J-01A	PANK1	chr10	91404357	-	ABCC2	chr10	101606718	+
intron-3CDS	ENST00000447733	ENST00000439174		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
intron-3CDS	ENST00000447733	ENST00000541118		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
Frame-shit	ENST00000449058	ENST00000439174		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
Frame-shit	ENST00000449058	ENST00000541118		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
Frame-shit	ENST00000425375	ENST00000439174		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
Frame-shit	ENST00000425375	ENST00000541118		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
Frame-shit	ENST00000411850	ENST00000439174		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
Frame-shit	ENST00000411850	ENST00000541118		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
5UTR-3CDS	ENST00000436462	ENST00000439174		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
5UTR-3CDS	ENST00000436462	ENST00000541118		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
5UTR-3CDS	ENST00000382034	ENST00000439174		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
5UTR-3CDS	ENST00000382034	ENST00000541118		TCGA	LD	STAD	TCGA-KB-A93J-01A	TOM1	chr22	35695973	+	GNA13	chr17	63014421	-
intron-intron	ENST00000394253	ENST00000493331		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-5UTR	ENST00000394253	ENST00000334575		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-intron	ENST00000373010	ENST00000493331		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-5UTR	ENST00000373010	ENST00000334575		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
5UTR-intron	ENST00000373006	ENST00000493331		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
5UTR-5UTR	ENST00000373006	ENST00000334575		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-intron	ENST00000297229	ENST00000493331		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-5UTR	ENST00000297229	ENST00000334575		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-intron	ENST00000373009	ENST00000493331		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
intron-5UTR	ENST00000373009	ENST00000334575		TCGA	LD	STAD	TCGA-KB-A93J-01A	USP49	chr6	41859532	-	GSTA1	chr6	52668676	-
In-frame	ENST00000265659	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
5CDS-5UTR	ENST00000265659	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
In-frame	ENST00000375241	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
5CDS-5UTR	ENST00000375241	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
In-frame	ENST00000375240	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
5CDS-5UTR	ENST00000375240	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
Frame-shit	ENST00000463569	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
5CDS-5UTR	ENST00000463569	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
In-frame	ENST00000375236	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
5CDS-5UTR	ENST00000375236	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
In-frame	ENST00000375242	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
5CDS-5UTR	ENST00000375242	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
intron-3CDS	ENST00000481149	ENST00000375234		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
intron-5UTR	ENST00000481149	ENST00000464512		TCGA	LD	STAD	TCGA-MX-A663-01A	CDC14B	chr9	99327059	-	AAED1	chr9	99413994	-
In-frame	ENST00000309295	ENST00000302503		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
5CDS-5UTR	ENST00000309295	ENST00000542981		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
5CDS-intron	ENST00000309295	ENST00000534074		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
intron-3CDS	ENST00000529596	ENST00000302503		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
intron-5UTR	ENST00000529596	ENST00000542981		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
intron-intron	ENST00000529596	ENST00000534074		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
intron-3CDS	ENST00000533364	ENST00000302503		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
intron-5UTR	ENST00000533364	ENST00000542981		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
intron-intron	ENST00000533364	ENST00000534074		TCGA	LD	STAD	TCGA-MX-A663-01A	EHBP1L1	chr11	65346907	+	MTCH2	chr11	47657123	-
In-frame	ENST00000374759	ENST00000313056		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
In-frame	ENST00000374759	ENST00000329197		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
5CDS-intron	ENST00000374759	ENST00000578287		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
intron-3CDS	ENST00000288439	ENST00000313056		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
intron-3CDS	ENST00000288439	ENST00000329197		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
intron-intron	ENST00000288439	ENST00000578287		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
intron-3CDS	ENST00000546352	ENST00000313056		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
intron-3CDS	ENST00000546352	ENST00000329197		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
intron-intron	ENST00000546352	ENST00000578287		TCGA	LD	STAD	TCGA-MX-A663-01A	SLC38A10	chr17	79225293	-	OGFOD3	chr17	80369406	-
Frame-shit	ENST00000473997	ENST00000455140		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000473997	ENST00000248070		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000473997	ENST00000535753		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000473997	ENST00000594975		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000473997	ENST00000602009		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000473997	ENST00000597937		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
Frame-shit	ENST00000346416	ENST00000455140		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000346416	ENST00000248070		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000346416	ENST00000535753		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000346416	ENST00000594975		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000346416	ENST00000602009		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000346416	ENST00000597937		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
Frame-shit	ENST00000339269	ENST00000455140		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000339269	ENST00000248070		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000339269	ENST00000535753		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000339269	ENST00000594975		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000339269	ENST00000602009		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000339269	ENST00000597937		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
Frame-shit	ENST00000357886	ENST00000455140		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000357886	ENST00000248070		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000357886	ENST00000535753		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000357886	ENST00000594975		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000357886	ENST00000602009		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000357886	ENST00000597937		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
Frame-shit	ENST00000544843	ENST00000455140		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000544843	ENST00000248070		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000544843	ENST00000535753		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000544843	ENST00000594975		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000544843	ENST00000602009		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5CDS-intron	ENST00000544843	ENST00000597937		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5UTR-3CDS	ENST00000477105	ENST00000455140		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5UTR-intron	ENST00000477105	ENST00000248070		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5UTR-intron	ENST00000477105	ENST00000535753		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5UTR-intron	ENST00000477105	ENST00000594975		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5UTR-intron	ENST00000477105	ENST00000602009		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
5UTR-intron	ENST00000477105	ENST00000597937		TCGA	LD	STAD	TCGA-MX-A666-01A	CDK5RAP1	chr20	31973456	-	EPS15L1	chr19	16466662	-
In-frame	ENST00000421999	ENST00000383693		TCGA	LD	STAD	TCGA-MX-A666-01A	CMSS1	chr3	99865905	+	LNP1	chr3	100170563	+
In-frame	ENST00000421999	ENST00000489752		TCGA	LD	STAD	TCGA-MX-A666-01A	CMSS1	chr3	99865905	+	LNP1	chr3	100170563	+
intron-3CDS	ENST00000496116	ENST00000383693		TCGA	LD	STAD	TCGA-MX-A666-01A	CMSS1	chr3	99865905	+	LNP1	chr3	100170563	+
intron-3CDS	ENST00000496116	ENST00000489752		TCGA	LD	STAD	TCGA-MX-A666-01A	CMSS1	chr3	99865905	+	LNP1	chr3	100170563	+
In-frame	ENST00000489081	ENST00000383693		TCGA	LD	STAD	TCGA-MX-A666-01A	CMSS1	chr3	99865905	+	LNP1	chr3	100170563	+
In-frame	ENST00000489081	ENST00000489752		TCGA	LD	STAD	TCGA-MX-A666-01A	CMSS1	chr3	99865905	+	LNP1	chr3	100170563	+
intron-5UTR	ENST00000597346	ENST00000418988		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000597346	ENST00000555531		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000597346	ENST00000419365		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000597346	ENST00000524606		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000597346	ENST00000396394		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000597346	ENST00000396393		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
intron-intron	ENST00000597346	ENST00000530457		TCGA	LD	STAD	TCGA-MX-A666-01A	KCNQ1OT1	chr11	2720558	-	PSMA1	chr11	14632697	-
In-frame	ENST00000244137	ENST00000215565		TCGA	LD	STAD	TCGA-MX-A666-01A	PEPD	chr19	33892627	-	NDUFB7	chr19	14677745	-
In-frame	ENST00000397032	ENST00000215565		TCGA	LD	STAD	TCGA-MX-A666-01A	PEPD	chr19	33892627	-	NDUFB7	chr19	14677745	-
In-frame	ENST00000436370	ENST00000215565		TCGA	LD	STAD	TCGA-MX-A666-01A	PEPD	chr19	33892627	-	NDUFB7	chr19	14677745	-
intron-3CDS	ENST00000591968	ENST00000215565		TCGA	LD	STAD	TCGA-MX-A666-01A	PEPD	chr19	33892627	-	NDUFB7	chr19	14677745	-
Frame-shit	ENST00000264645	ENST00000352035		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	CASC3	chr17	38324670	+	ACLY	chr17	40024157	-
In-frame	ENST00000264645	ENST00000590151		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	CASC3	chr17	38324670	+	ACLY	chr17	40024157	-
In-frame	ENST00000264645	ENST00000353196		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	CASC3	chr17	38324670	+	ACLY	chr17	40024157	-
In-frame	ENST00000264645	ENST00000537919		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	CASC3	chr17	38324670	+	ACLY	chr17	40024157	-
In-frame	ENST00000264645	ENST00000393896		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	CASC3	chr17	38324670	+	ACLY	chr17	40024157	-
5CDS-5UTR	ENST00000264645	ENST00000588779		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	CASC3	chr17	38324670	+	ACLY	chr17	40024157	-
In-frame	ENST00000219368	ENST00000205061		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	FA2H	chr16	74773921	-	GLG1	chr16	74506309	-
In-frame	ENST00000219368	ENST00000422840		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	FA2H	chr16	74773921	-	GLG1	chr16	74506309	-
In-frame	ENST00000219368	ENST00000447066		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	FA2H	chr16	74773921	-	GLG1	chr16	74506309	-
5UTR-3CDS	ENST00000544337	ENST00000205061		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	FA2H	chr16	74773921	-	GLG1	chr16	74506309	-
5UTR-3CDS	ENST00000544337	ENST00000422840		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	FA2H	chr16	74773921	-	GLG1	chr16	74506309	-
5UTR-3CDS	ENST00000544337	ENST00000447066		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	FA2H	chr16	74773921	-	GLG1	chr16	74506309	-
5UTR-3CDS	ENST00000379509	ENST00000288670		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000379509	ENST00000475377		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000379509	ENST00000497192		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-3CDS	ENST00000319406	ENST00000288670		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000319406	ENST00000475377		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000319406	ENST00000497192		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
3UTR-3CDS	ENST00000491680	ENST00000288670		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
3UTR-intron	ENST00000491680	ENST00000475377		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
3UTR-intron	ENST00000491680	ENST00000497192		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-3CDS	ENST00000359433	ENST00000288670		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000359433	ENST00000475377		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000359433	ENST00000497192		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-3CDS	ENST00000309052	ENST00000288670		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000309052	ENST00000475377		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000309052	ENST00000497192		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-3CDS	ENST00000540623	ENST00000288670		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000540623	ENST00000475377		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5UTR-intron	ENST00000540623	ENST00000497192		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	LCLAT1	chr2	30670249	+	FMNL2	chr2	153378457	+
5CDS-3UTR	ENST00000254260	ENST00000240587		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	RHPN2	chr19	33481420	-	TSHZ3	chr19	31766039	-
5CDS-intron	ENST00000254260	ENST00000558569		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	RHPN2	chr19	33481420	-	TSHZ3	chr19	31766039	-
5CDS-3UTR	ENST00000400226	ENST00000240587		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	RHPN2	chr19	33481420	-	TSHZ3	chr19	31766039	-
5CDS-intron	ENST00000400226	ENST00000558569		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	RHPN2	chr19	33481420	-	TSHZ3	chr19	31766039	-
5UTR-3UTR	ENST00000588683	ENST00000240587		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	RHPN2	chr19	33481420	-	TSHZ3	chr19	31766039	-
5UTR-intron	ENST00000588683	ENST00000558569		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	RHPN2	chr19	33481420	-	TSHZ3	chr19	31766039	-
3UTR-3CDS	ENST00000494757	ENST00000584601		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000406381		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000541774		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000445658		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000540147		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000584450		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000269571		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000578199		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3CDS	ENST00000494757	ENST00000540042		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-intron	ENST00000494757	ENST00000584888		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000584601		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000406381		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000541774		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000445658		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000540147		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000584450		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000269571		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000578199		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000323571	ENST00000540042		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
5CDS-intron	ENST00000323571	ENST00000584888		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000584601		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000406381		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000541774		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000445658		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000540147		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000584450		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000269571		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000578199		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000585043	ENST00000540042		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
5CDS-intron	ENST00000585043	ENST00000584888		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000584601		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000406381		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000541774		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000445658		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000540147		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000584450		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000269571		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000578199		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000394103	ENST00000540042		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-intron	ENST00000394103	ENST00000584888		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000584601		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000406381		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000541774		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000445658		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000540147		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000584450		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000269571		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000578199		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-3CDS	ENST00000536600	ENST00000540042		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
intron-intron	ENST00000536600	ENST00000584888		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000584601		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000406381		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000541774		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000445658		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000540147		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000584450		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000269571		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000578199		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
In-frame	ENST00000583130	ENST00000540042		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
5CDS-intron	ENST00000583130	ENST00000584888		TCGA	LD	STAD	TCGA-R5-A7ZE-01B	WIPF2	chr17	38421398	+	ERBB2	chr17	37872554	+
3UTR-3UTR	ENST00000462284	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-5UTR	ENST00000462284	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-3UTR	ENST00000356290	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-5UTR	ENST00000356290	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-3UTR	ENST00000540827	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-5UTR	ENST00000540827	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-3UTR	ENST00000258149	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-5UTR	ENST00000258149	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-3UTR	ENST00000428863	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
3UTR-5UTR	ENST00000428863	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000393412	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000393412	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000258148	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000258148	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000544561	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000544561	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000393410	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000393410	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000393413	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000393413	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000517852	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000517852	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000545204	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000545204	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000350057	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000350057	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000360430	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000360430	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000299252	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000299252	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000348801	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000348801	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000478070	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000478070	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-3UTR	ENST00000544125	ENST00000502346		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
intron-5UTR	ENST00000544125	ENST00000511450		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	MDM2	chr12	69235964	+	TMEM167A	chr5	82350549	-
5CDS-intron	ENST00000481195	ENST00000371720		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5CDS-intron	ENST00000481195	ENST00000371717		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5CDS-intron	ENST00000481195	ENST00000399219		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5CDS-intron	ENST00000481195	ENST00000462616		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5UTR-intron	ENST00000231504	ENST00000371720		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5UTR-intron	ENST00000231504	ENST00000371717		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5UTR-intron	ENST00000231504	ENST00000399219		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
5UTR-intron	ENST00000231504	ENST00000462616		TCGA	LD	STAD	TCGA-R5-A7ZF-01A	PPP2CA	chr5	133561451	-	PMPCA	chr9	139316284	+
In-frame	ENST00000264613	ENST00000465804		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
In-frame	ENST00000264613	ENST00000360632		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
In-frame	ENST00000264613	ENST00000467467		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
5CDS-intron	ENST00000264613	ENST00000474080		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
5UTR-3CDS	ENST00000462336	ENST00000465804		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
5UTR-3CDS	ENST00000462336	ENST00000360632		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
5UTR-3CDS	ENST00000462336	ENST00000467467		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
5UTR-intron	ENST00000462336	ENST00000474080		TCGA	LD	STAD	TCGA-R5-A7ZI-01A	CP	chr3	148905839	-	WWTR1	chr3	149260324	-
In-frame	ENST00000366508	ENST00000357681		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000366508	ENST00000391954		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000366508	ENST00000367218		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000366508	ENST00000367219		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000366508	ENST00000341360		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
5CDS-intron	ENST00000366508	ENST00000466407		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000326225	ENST00000357681		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000326225	ENST00000391954		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000326225	ENST00000367218		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000326225	ENST00000367219		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000326225	ENST00000341360		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
5CDS-intron	ENST00000326225	ENST00000466407		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000391829	ENST00000357681		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000391829	ENST00000391954		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000391829	ENST00000367218		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000391829	ENST00000367219		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
In-frame	ENST00000391829	ENST00000341360		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
5CDS-intron	ENST00000391829	ENST00000466407		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
intron-3CDS	ENST00000470300	ENST00000357681		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
intron-3CDS	ENST00000470300	ENST00000391954		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
intron-3CDS	ENST00000470300	ENST00000367218		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
intron-3CDS	ENST00000470300	ENST00000367219		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
intron-3CDS	ENST00000470300	ENST00000341360		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
intron-intron	ENST00000470300	ENST00000466407		TCGA	LD	STAD	TCGA-RD-A8MV-01A	AHCTF1	chr1	247076534	-	ATP2B4	chr1	203676137	+
Frame-shit	ENST00000264033	ENST00000264027		TCGA	LD	STAD	TCGA-RD-A8MV-01A	CBL	chr11	119103405	+	SC5D	chr11	121177095	+
Frame-shit	ENST00000264033	ENST00000534230		TCGA	LD	STAD	TCGA-RD-A8MV-01A	CBL	chr11	119103405	+	SC5D	chr11	121177095	+
Frame-shit	ENST00000264033	ENST00000392789		TCGA	LD	STAD	TCGA-RD-A8MV-01A	CBL	chr11	119103405	+	SC5D	chr11	121177095	+
5CDS-intron	ENST00000264033	ENST00000528991		TCGA	LD	STAD	TCGA-RD-A8MV-01A	CBL	chr11	119103405	+	SC5D	chr11	121177095	+
5CDS-5UTR	ENST00000258349	ENST00000356198		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000258349	ENST00000345664		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000258349	ENST00000367710		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-intron	ENST00000258349	ENST00000495275		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367696	ENST00000356198		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367696	ENST00000345664		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367696	ENST00000367710		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-intron	ENST00000367696	ENST00000495275		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367694	ENST00000356198		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367694	ENST00000345664		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-5UTR	ENST00000367694	ENST00000367710		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
5CDS-intron	ENST00000367694	ENST00000495275		TCGA	LD	STAD	TCGA-RD-A8MV-01A	RC3H1	chr1	173941647	-	CENPL	chr1	173780444	-
In-frame	ENST00000299626	ENST00000566228		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
In-frame	ENST00000299626	ENST00000323433		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
In-frame	ENST00000299626	ENST00000306030		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
5CDS-intron	ENST00000299626	ENST00000568359		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
Frame-shit	ENST00000376156	ENST00000566228		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
Frame-shit	ENST00000376156	ENST00000323433		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
Frame-shit	ENST00000376156	ENST00000306030		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
5CDS-intron	ENST00000376156	ENST00000568359		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
intron-3CDS	ENST00000532552	ENST00000566228		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
intron-3CDS	ENST00000532552	ENST00000323433		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
intron-3CDS	ENST00000532552	ENST00000306030		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
intron-intron	ENST00000532552	ENST00000568359		TCGA	LD	STAD	TCGA-RD-A8MW-01A	ALG8	chr11	77835067	-	SNX29	chr16	12497305	+
Frame-shit	ENST00000356341	ENST00000532481		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000356341	ENST00000527134		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000356341	ENST00000304716		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000356341	ENST00000526415		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000356341	ENST00000531855		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000356341	ENST00000393427		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000356341	ENST00000525409		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000356341	ENST00000533193		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000356341	ENST00000525034		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000530617	ENST00000532481		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000530617	ENST00000527134		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000530617	ENST00000304716		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000530617	ENST00000526415		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000530617	ENST00000531855		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000530617	ENST00000393427		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000530617	ENST00000525409		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000530617	ENST00000533193		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000530617	ENST00000525034		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000278568	ENST00000532481		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000278568	ENST00000527134		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000278568	ENST00000304716		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000278568	ENST00000526415		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000278568	ENST00000531855		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000278568	ENST00000393427		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000278568	ENST00000525409		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000278568	ENST00000533193		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000278568	ENST00000525034		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000528203	ENST00000532481		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000528203	ENST00000527134		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000528203	ENST00000304716		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
Frame-shit	ENST00000528203	ENST00000526415		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000528203	ENST00000531855		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000528203	ENST00000393427		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000528203	ENST00000525409		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000528203	ENST00000533193		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5CDS-intron	ENST00000528203	ENST00000525034		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-3CDS	ENST00000525542	ENST00000532481		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-3CDS	ENST00000525542	ENST00000527134		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-3CDS	ENST00000525542	ENST00000304716		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-3CDS	ENST00000525542	ENST00000526415		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-intron	ENST00000525542	ENST00000531855		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-intron	ENST00000525542	ENST00000393427		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-intron	ENST00000525542	ENST00000525409		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-intron	ENST00000525542	ENST00000533193		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
intron-intron	ENST00000525542	ENST00000525034		TCGA	LD	STAD	TCGA-RD-A8N4-01A	PAK1	chr11	77085373	-	AAMDC	chr11	77580768	+
5UTR-3CDS	ENST00000355619	ENST00000544440		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
5UTR-3CDS	ENST00000355619	ENST00000407578		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
5UTR-3CDS	ENST00000355619	ENST00000357337		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
5UTR-5UTR	ENST00000355619	ENST00000360084		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
5UTR-intron	ENST00000355619	ENST00000482517		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
intron-3CDS	ENST00000477982	ENST00000544440		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
intron-3CDS	ENST00000477982	ENST00000407578		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
intron-3CDS	ENST00000477982	ENST00000357337		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
intron-5UTR	ENST00000477982	ENST00000360084		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
intron-intron	ENST00000477982	ENST00000482517		TCGA	LD	STAD	TCGA-RD-A8N9-01A	FBXL3	chr13	77600962	-	MYCBP2	chr13	77752089	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-SW-A7EA-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142283105	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-SW-A7EA-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142283105	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-SW-A7EA-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142283105	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-SW-A7EA-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142283105	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-SW-A7EA-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142283105	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-SW-A7EA-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142283105	+
Frame-shit	ENST00000399151	ENST00000589123		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-intron	ENST00000399151	ENST00000346156		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-intron	ENST00000399151	ENST00000395111		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-intron	ENST00000399151	ENST00000586919		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-intron	ENST00000399151	ENST00000341919		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-intron	ENST00000399151	ENST00000590282		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-intron	ENST00000399151	ENST00000443272		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
5CDS-3UTR	ENST00000399151	ENST00000588839		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-3CDS	ENST00000492760	ENST00000589123		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-intron	ENST00000492760	ENST00000346156		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-intron	ENST00000492760	ENST00000395111		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-intron	ENST00000492760	ENST00000586919		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-intron	ENST00000492760	ENST00000341919		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-intron	ENST00000492760	ENST00000590282		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-intron	ENST00000492760	ENST00000443272		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-3UTR	ENST00000492760	ENST00000588839		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	DOPEY2	chr21	37537169	+	NFIC	chr19	3425104	+
3UTR-3CDS	ENST00000445504	ENST00000369046		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-intron	ENST00000445504	ENST00000467262		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-intron	ENST00000445504	ENST00000369044		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-3CDS	ENST00000381361	ENST00000369046		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-intron	ENST00000381361	ENST00000467262		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-intron	ENST00000381361	ENST00000369044		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-3CDS	ENST00000381363	ENST00000369046		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-intron	ENST00000381363	ENST00000467262		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
3UTR-intron	ENST00000381363	ENST00000369044		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	IGF2-AS	chr11	2162177	+	QRSL1	chr6	107110855	+
Frame-shit	ENST00000278836	ENST00000432063		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
Frame-shit	ENST00000278836	ENST00000338608		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
5CDS-intron	ENST00000278836	ENST00000366212		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
5CDS-intron	ENST00000278836	ENST00000538185		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
Frame-shit	ENST00000265460	ENST00000432063		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
Frame-shit	ENST00000265460	ENST00000338608		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
5CDS-intron	ENST00000265460	ENST00000366212		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
5CDS-intron	ENST00000265460	ENST00000538185		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-3CDS	ENST00000327797	ENST00000432063		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-3CDS	ENST00000327797	ENST00000338608		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-intron	ENST00000327797	ENST00000366212		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-intron	ENST00000327797	ENST00000538185		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-3CDS	ENST00000389602	ENST00000432063		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-3CDS	ENST00000389602	ENST00000338608		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-intron	ENST00000389602	ENST00000366212		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
intron-intron	ENST00000389602	ENST00000538185		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	MYRF	chr11	61533184	+	PPP1R32	chr11	61252810	+
5CDS-5UTR	ENST00000277541	ENST00000342129		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
5CDS-5UTR	ENST00000277541	ENST00000340951		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
5CDS-5UTR	ENST00000277541	ENST00000479452		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
5CDS-5UTR	ENST00000277541	ENST00000475006		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
5CDS-5UTR	ENST00000277541	ENST00000465160		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
intron-5UTR	ENST00000491649	ENST00000342129		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
intron-5UTR	ENST00000491649	ENST00000340951		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
intron-5UTR	ENST00000491649	ENST00000479452		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
intron-5UTR	ENST00000491649	ENST00000475006		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
intron-5UTR	ENST00000491649	ENST00000465160		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	NOTCH1	chr9	139440178	-	EXD3	chr9	140289856	-
intron-3CDS	ENST00000542191	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000542191	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000542191	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-intron	ENST00000542191	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000261368	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000261368	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000261368	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-intron	ENST00000261368	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379538	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379538	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379538	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-intron	ENST00000379538	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379533	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379533	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379533	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-intron	ENST00000379533	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379536	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379536	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000379536	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-intron	ENST00000379536	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000261367	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000261367	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000261367	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-intron	ENST00000261367	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000414317	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000414317	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-3CDS	ENST00000414317	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
5UTR-intron	ENST00000414317	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000503116	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000503116	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000503116	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-intron	ENST00000503116	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000504884	ENST00000378746		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000504884	ENST00000378735		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-3CDS	ENST00000504884	ENST00000403231		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-intron	ENST00000504884	ENST00000487055		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	KIF3A	chr5	132070170	-
intron-intron	ENST00000542191	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
intron-intron	ENST00000542191	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000261368	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000261368	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000379538	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000379538	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000379533	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000379533	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000379536	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000379536	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000261367	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000261367	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000414317	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
5UTR-intron	ENST00000414317	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
intron-intron	ENST00000503116	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
intron-intron	ENST00000503116	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
intron-intron	ENST00000504884	ENST00000504881		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
intron-intron	ENST00000504884	ENST00000339397		TCGA	LD	STAD	TCGA-VQ-A8DU-01A	SNCAIP	chr5	121647979	+	SRFBP1	chr5	121362637	+
In-frame	ENST00000312239	ENST00000321556		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
5CDS-3UTR	ENST00000312239	ENST00000492302		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
intron-3CDS	ENST00000487117	ENST00000321556		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
intron-3UTR	ENST00000487117	ENST00000492302		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
In-frame	ENST00000375000	ENST00000321556		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
5CDS-3UTR	ENST00000375000	ENST00000492302		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
intron-3CDS	ENST00000375003	ENST00000321556		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
intron-3UTR	ENST00000375003	ENST00000492302		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	HP1BP3	chr1	21103090	-	PINK1	chr1	20970983	+
In-frame	ENST00000287218	ENST00000438447		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
In-frame	ENST00000287218	ENST00000282493		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
5CDS-intron	ENST00000287218	ENST00000513490		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
In-frame	ENST00000373391	ENST00000438447		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
In-frame	ENST00000373391	ENST00000282493		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
5CDS-intron	ENST00000373391	ENST00000513490		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
intron-3CDS	ENST00000463847	ENST00000438447		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
intron-3CDS	ENST00000463847	ENST00000282493		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
intron-intron	ENST00000463847	ENST00000513490		TCGA	LD	STAD	TCGA-VQ-A8DV-01A	ZFAND3	chr6	37787792	+	PDZD2	chr5	32061108	+
5CDS-intron	ENST00000584601	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000584601	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000584601	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000584601	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000584601	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000584601	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000584601	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000406381	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000541774	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000445658	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000540147	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
3UTR-intron	ENST00000584450	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
5CDS-intron	ENST00000269571	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000578199	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000540042	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000578312		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000262394		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000579733		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000583193		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000581185		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000427287		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
intron-intron	ENST00000584888	ENST00000348811		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	ERBB2	chr17	37884131	+	WSB1	chr17	25625631	+
Frame-shit	ENST00000308488	ENST00000294064		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000308488	ENST00000531509		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000308488	ENST00000544263		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000308488	ENST00000529024		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000308488	ENST00000532963		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000308488	ENST00000531619		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000308488	ENST00000545272		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000308488	ENST00000526068		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000308488	ENST00000534628		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000360355	ENST00000294064		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
Frame-shit	ENST00000360355	ENST00000531509		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-5UTR	ENST00000360355	ENST00000544263		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000360355	ENST00000529024		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000360355	ENST00000532963		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000360355	ENST00000531619		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000360355	ENST00000545272		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000360355	ENST00000526068		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-intron	ENST00000360355	ENST00000534628		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000480887	ENST00000294064		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000480887	ENST00000531509		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000480887	ENST00000544263		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000480887	ENST00000529024		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000480887	ENST00000532963		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000480887	ENST00000531619		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000480887	ENST00000545272		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000480887	ENST00000526068		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000480887	ENST00000534628		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000530604	ENST00000294064		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-3CDS	ENST00000530604	ENST00000531509		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-5UTR	ENST00000530604	ENST00000544263		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000530604	ENST00000529024		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000530604	ENST00000532963		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000530604	ENST00000531619		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000530604	ENST00000545272		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000530604	ENST00000526068		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
intron-intron	ENST00000530604	ENST00000534628		TCGA	LD	STAD	TCGA-VQ-A8DZ-01A	RSF1	chr11	77475643	-	NEU3	chr11	74705554	+
5CDS-3UTR	ENST00000005260	ENST00000371497		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	BAIAP2L1	chr7	98030114	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000005260	ENST00000603338		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	BAIAP2L1	chr7	98030114	-	TSHZ2	chr20	52103683	+
5CDS-intron	ENST00000005260	ENST00000329613		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	BAIAP2L1	chr7	98030114	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000462558	ENST00000371497		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	BAIAP2L1	chr7	98030114	-	TSHZ2	chr20	52103683	+
5UTR-3UTR	ENST00000462558	ENST00000603338		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	BAIAP2L1	chr7	98030114	-	TSHZ2	chr20	52103683	+
5UTR-intron	ENST00000462558	ENST00000329613		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	BAIAP2L1	chr7	98030114	-	TSHZ2	chr20	52103683	+
5CDS-3UTR	ENST00000430031	ENST00000370454		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
5CDS-intron	ENST00000430031	ENST00000479252		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
5CDS-3UTR	ENST00000234626	ENST00000370454		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
5CDS-intron	ENST00000234626	ENST00000479252		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
5CDS-3UTR	ENST00000428239	ENST00000370454		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
5CDS-intron	ENST00000428239	ENST00000479252		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
intron-3UTR	ENST00000497611	ENST00000370454		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
intron-intron	ENST00000497611	ENST00000479252		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CDC7	chr1	91979600	+	LRRC8C	chr1	90184483	+
Frame-shit	ENST00000454250	ENST00000407149		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
Frame-shit	ENST00000454250	ENST00000379551		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000454250	ENST00000505123		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000454250	ENST00000446965		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
Frame-shit	ENST00000306901	ENST00000407149		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
Frame-shit	ENST00000306901	ENST00000379551		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000306901	ENST00000505123		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5CDS-5UTR	ENST00000306901	ENST00000446965		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5UTR-3CDS	ENST00000455693	ENST00000407149		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5UTR-3CDS	ENST00000455693	ENST00000379551		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5UTR-5UTR	ENST00000455693	ENST00000505123		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5UTR-5UTR	ENST00000455693	ENST00000446965		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	CHRNA7	chr15	32323240	+	PRR16	chr5	120021649	+
5CDS-3UTR	ENST00000369393	ENST00000257749		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-3UTR	ENST00000369393	ENST00000537989		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-intron	ENST00000369393	ENST00000343122		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-intron	ENST00000369393	ENST00000470301		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-3UTR	ENST00000428876	ENST00000257749		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-3UTR	ENST00000428876	ENST00000537989		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-intron	ENST00000428876	ENST00000343122		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
5CDS-intron	ENST00000428876	ENST00000470301		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
intron-3UTR	ENST00000468568	ENST00000257749		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
intron-3UTR	ENST00000468568	ENST00000537989		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
intron-intron	ENST00000468568	ENST00000343122		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
intron-intron	ENST00000468568	ENST00000470301		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	MDN1	chr6	90428085	-	BACH2	chr6	90638188	-
In-frame	ENST00000403593	ENST00000257600		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	SDSL	chr12	113866264	+	DTX1	chr12	113515229	+
5CDS-intron	ENST00000403593	ENST00000547974		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	SDSL	chr12	113866264	+	DTX1	chr12	113515229	+
In-frame	ENST00000345635	ENST00000257600		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	SDSL	chr12	113866264	+	DTX1	chr12	113515229	+
5CDS-intron	ENST00000345635	ENST00000547974		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	SDSL	chr12	113866264	+	DTX1	chr12	113515229	+
intron-5UTR	ENST00000372084	ENST00000262746		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000372084	ENST00000319248		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000372084	ENST00000372079		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
intron-5UTR	ENST00000372084	ENST00000483583		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000262746		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000319248		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000372079		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000372086	ENST00000483583		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000262746		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000319248		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000372079		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000341771	ENST00000483583		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000262746		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000319248		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000372079		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000486676	ENST00000483583		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000262746		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000319248		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000372079		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000538496	ENST00000483583		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000262746		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000319248		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000372079		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000451835	ENST00000483583		TCGA	LD	STAD	TCGA-VQ-A8E0-01A	TESK2	chr1	45956524	-	PRDX1	chr1	45984726	-
5UTR-5UTR	ENST00000515037	ENST00000485760		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-intron	ENST00000515037	ENST00000371236		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-5UTR	ENST00000515037	ENST00000371234		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-intron	ENST00000515037	ENST00000420954		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-intron	ENST00000515037	ENST00000439789		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-intron	ENST00000515037	ENST00000414851		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-intron	ENST00000515037	ENST00000371231		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5UTR-intron	ENST00000515037	ENST00000371230		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-5UTR	ENST00000358869	ENST00000485760		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-intron	ENST00000358869	ENST00000371236		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-5UTR	ENST00000358869	ENST00000371234		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-intron	ENST00000358869	ENST00000420954		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-intron	ENST00000358869	ENST00000439789		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-intron	ENST00000358869	ENST00000414851		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-intron	ENST00000358869	ENST00000371231		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-intron	ENST00000358869	ENST00000371230		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-5UTR	ENST00000513966	ENST00000485760		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-intron	ENST00000513966	ENST00000371236		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-5UTR	ENST00000513966	ENST00000371234		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-intron	ENST00000513966	ENST00000420954		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-intron	ENST00000513966	ENST00000439789		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-intron	ENST00000513966	ENST00000414851		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-intron	ENST00000513966	ENST00000371231		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
intron-intron	ENST00000513966	ENST00000371230		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	FAM114A1	chr4	38893451	+	DAB1	chr1	58115337	-
5CDS-5UTR	ENST00000522684	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000535192	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000519465	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000517887	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000521059	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000395218	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000538769	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000340930	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-5UTR	ENST00000519419	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000430260	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000519881	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000520892	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000519635	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000517712	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000522950	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
intron-5UTR	ENST00000520151	ENST00000502463		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141840571	-	CASC11	chr8	128746205	-
5CDS-intron	ENST00000522684	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000535192	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000519465	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000517887	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000521059	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000395218	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000538769	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000340930	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000519419	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000430260	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000519881	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
5CDS-intron	ENST00000520892	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000519635	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000517712	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000522950	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-intron	ENST00000520151	ENST00000408388		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PTK2	chr8	141900642	-	PVT1	chr8	129082406	+
intron-5UTR	ENST00000408388	ENST00000522684		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000535192		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000519465		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000517887		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000521059		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000395218		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000538769		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000340930		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000519419		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000430260		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000519881		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-5UTR	ENST00000408388	ENST00000520892		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000519635		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000517712		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000522950		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
intron-intron	ENST00000408388	ENST00000520151		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	PVT1	chr8	128951922	+	PTK2	chr8	141900868	-
5CDS-5UTR	ENST00000360605	ENST00000436066		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000360605	ENST00000592810		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000542441	ENST00000436066		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000542441	ENST00000592810		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000392271	ENST00000436066		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000392271	ENST00000592810		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000312051	ENST00000436066		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
5CDS-5UTR	ENST00000312051	ENST00000592810		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000574176	ENST00000436066		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
intron-5UTR	ENST00000574176	ENST00000592810		TCGA	LD	STAD	TCGA-VQ-A8E2-01A	URI1	chr19	30477324	+	PLEKHF1	chr19	30164731	+
In-frame	ENST00000359651	ENST00000367282		TCGA	LD	STAD	TCGA-VQ-A8E7-01B	ELF3	chr1	201980427	+	GPR37L1	chr1	202096869	+
In-frame	ENST00000367284	ENST00000367282		TCGA	LD	STAD	TCGA-VQ-A8E7-01B	ELF3	chr1	201980427	+	GPR37L1	chr1	202096869	+
In-frame	ENST00000367283	ENST00000367282		TCGA	LD	STAD	TCGA-VQ-A8E7-01B	ELF3	chr1	201980427	+	GPR37L1	chr1	202096869	+
3UTR-3CDS	ENST00000495848	ENST00000367282		TCGA	LD	STAD	TCGA-VQ-A8E7-01B	ELF3	chr1	201980427	+	GPR37L1	chr1	202096869	+
5UTR-5UTR	ENST00000480912	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000480912	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000480912	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-5UTR	ENST00000480912	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-intron	ENST00000480912	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-intron	ENST00000480912	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-intron	ENST00000480912	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5UTR-intron	ENST00000480912	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000395728	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000395728	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000395728	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000395728	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000395728	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000395728	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000395728	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000395728	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375528	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375528	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375528	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375528	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375528	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375528	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375528	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375528	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375530	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375530	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375530	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375530	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375530	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375530	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375530	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375530	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375537	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375537	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375537	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-5UTR	ENST00000375537	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375537	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375537	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375537	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
5CDS-intron	ENST00000375537	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000498185	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000498185	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000498185	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000498185	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000498185	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000498185	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000498185	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000498185	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000415323	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000415323	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000415323	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000415323	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000415323	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000415323	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000415323	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000415323	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450323	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450323	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450323	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450323	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450323	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450323	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450323	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450323	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000440987	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000440987	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000440987	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000440987	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000440987	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000440987	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000440987	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000440987	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000421926	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000421926	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000421926	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000421926	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000421926	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000421926	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000421926	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000421926	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000551865	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000551865	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000551865	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000551865	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000551865	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000551865	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000551865	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000551865	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497104	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497104	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497104	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497104	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497104	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497104	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497104	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497104	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000436403	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000436403	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000436403	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000436403	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000436403	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000436403	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000436403	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000436403	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000443951	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000443951	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000443951	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000443951	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000443951	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000443951	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000443951	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000443951	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420874	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420874	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420874	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420874	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420874	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420874	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420874	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420874	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450075	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450075	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450075	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450075	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450075	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450075	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450075	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450075	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000552339	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000552339	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000552339	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000552339	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000552339	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000552339	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000552339	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000552339	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497361	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497361	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497361	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000497361	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497361	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497361	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497361	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000497361	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420930	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420930	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420930	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420930	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420930	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420930	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420930	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420930	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000428442	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000428442	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000428442	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000428442	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000428442	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000428442	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000428442	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000428442	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450229	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450229	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450229	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000450229	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450229	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450229	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450229	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000450229	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000429506	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000429506	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000429506	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000429506	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000429506	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000429506	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000429506	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000429506	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000547244	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000547244	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000547244	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000547244	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000547244	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000547244	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000547244	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000547244	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000467139	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000467139	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000467139	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000467139	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000467139	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000467139	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000467139	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000467139	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000446303	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000446303	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000446303	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000446303	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000446303	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000446303	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000446303	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000446303	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000427405	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000427405	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000427405	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000427405	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000427405	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000427405	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000427405	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000427405	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000454705	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000454705	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000454705	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000454705	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000454705	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000454705	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000454705	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000454705	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420336	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420336	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420336	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000420336	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420336	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420336	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420336	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000420336	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000546877	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000546877	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000546877	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000546877	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000546877	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000546877	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000546877	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000546877	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400006	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400006	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400006	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400006	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400006	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400006	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400006	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400006	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000469681	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000469681	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000469681	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000469681	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000469681	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000469681	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000469681	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000469681	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400008	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400008	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400008	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000400008	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400008	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400008	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400008	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000400008	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383372	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383372	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383372	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383372	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383372	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383372	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383372	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383372	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383373	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383373	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383373	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000383373	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383373	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383373	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383373	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000383373	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000550866	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000550866	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000550866	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000550866	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000550866	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000550866	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000550866	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000550866	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000425250	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000425250	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000425250	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000425250	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000425250	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000425250	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000425250	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000425250	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000487513	ENST00000535699		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000487513	ENST00000538660		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000487513	ENST00000367400		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-5UTR	ENST00000487513	ENST00000367399		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000487513	ENST00000543483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000487513	ENST00000544212		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000487513	ENST00000367397		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-intron	ENST00000487513	ENST00000476483		TCGA	LD	STAD	TCGA-VQ-A8P5-01A	EHMT2	chr6	31854358	-	CRB1	chr1	197297552	+
intron-3CDS	ENST00000462274	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000462274	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000462274	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000462274	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000462274	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-intron	ENST00000462274	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000338785	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000338785	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000338785	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000338785	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000338785	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000338785	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000451934	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000451934	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000451934	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000451934	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000451934	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000451934	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000321219	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000321219	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000321219	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000321219	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000321219	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000321219	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000339659	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000339659	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000339659	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000339659	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000339659	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000339659	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398960	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398960	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398960	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000398960	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000398960	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000398960	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398956	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398956	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
Frame-shit	ENST00000398956	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-3UTR	ENST00000398956	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-5UTR	ENST00000398956	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
5CDS-intron	ENST00000398956	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3CDS	ENST00000455387	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000455387	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-5UTR	ENST00000455387	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-intron	ENST00000455387	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8P8-01A	DYRK1A	chr21	38792686	+	TTC3	chr21	38480692	+
intron-3UTR	ENST00000302555	ENST00000261267		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000302555	ENST00000549690		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000302555	ENST00000548839		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000381362	ENST00000261267		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381362	ENST00000549690		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381362	ENST00000548839		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000341642	ENST00000261267		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000341642	ENST00000549690		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000341642	ENST00000548839		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000381360	ENST00000261267		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381360	ENST00000549690		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000381360	ENST00000548839		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-3UTR	ENST00000573897	ENST00000261267		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000573897	ENST00000549690		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-intron	ENST00000573897	ENST00000548839		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	GP2	chr16	20322540	-	LYZ	chr12	69747553	+
intron-3CDS	ENST00000341547	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000341547	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000341547	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000357063	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000357063	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000357063	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000377534	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000377534	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000377534	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000321797	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000321797	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000321797	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000526202	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000526202	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000526202	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000465261	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000465261	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000465261	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000605961	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-3CDS	ENST00000605961	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
intron-intron	ENST00000605961	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	LMO7	chr13	76210862	+	KLF12	chr13	74289662	-
Frame-shit	ENST00000371080	ENST00000371076		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
5CDS-3UTR	ENST00000371080	ENST00000464349		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
Frame-shit	ENST00000371079	ENST00000371076		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
5CDS-3UTR	ENST00000371079	ENST00000464349		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
3UTR-3CDS	ENST00000482426	ENST00000371076		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
3UTR-3UTR	ENST00000482426	ENST00000464349		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
intron-3CDS	ENST00000545203	ENST00000371076		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
intron-3UTR	ENST00000545203	ENST00000464349		TCGA	LD	STAD	TCGA-VQ-A8PC-01A	ROR1	chr1	64516388	+	UBE2U	chr1	64707335	+
5CDS-5UTR	ENST00000584667	ENST00000556126		TCGA	LD	STAD	TCGA-VQ-A8PD-01A	SAP30BP	chr17	73667943	+	SMIM6	chr17	73642735	+
5CDS-5UTR	ENST00000584667	ENST00000579469		TCGA	LD	STAD	TCGA-VQ-A8PD-01A	SAP30BP	chr17	73667943	+	SMIM6	chr17	73642735	+
intron-5UTR	ENST00000355423	ENST00000556126		TCGA	LD	STAD	TCGA-VQ-A8PD-01A	SAP30BP	chr17	73667943	+	SMIM6	chr17	73642735	+
intron-5UTR	ENST00000355423	ENST00000579469		TCGA	LD	STAD	TCGA-VQ-A8PD-01A	SAP30BP	chr17	73667943	+	SMIM6	chr17	73642735	+
3UTR-5UTR	ENST00000579864	ENST00000556126		TCGA	LD	STAD	TCGA-VQ-A8PD-01A	SAP30BP	chr17	73667943	+	SMIM6	chr17	73642735	+
3UTR-5UTR	ENST00000579864	ENST00000579469		TCGA	LD	STAD	TCGA-VQ-A8PD-01A	SAP30BP	chr17	73667943	+	SMIM6	chr17	73642735	+
5UTR-5UTR	ENST00000392335	ENST00000596304		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000430157		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000596273		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000442744		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000595683		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000595158		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000598780		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000599551		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000597451		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000392335	ENST00000599595		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000596304		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000430157		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000596273		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000442744		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000595683		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000595158		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000598780		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000599551		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000597451		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000535612	ENST00000599595		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000596304		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000430157		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000596273		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000442744		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000595683		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000595158		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000598780		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000599551		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000597451		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000269932	ENST00000599595		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000596304		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000430157		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000596273		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000442744		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000595683		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000595158		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000598780		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000599551		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000597451		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-5UTR	ENST00000546344	ENST00000599595		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000596304		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000430157		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000596273		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000442744		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000595683		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000595158		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000598780		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000599551		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000597451		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
intron-5UTR	ENST00000392336	ENST00000599595		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ARMC6	chr19	19144739	+	UBA52	chr19	18684103	+
5UTR-intron	ENST00000548446	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000548446	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000548446	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000548446	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000548446	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-intron	ENST00000420353	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000420353	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000420353	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000420353	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000420353	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-intron	ENST00000415113	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000415113	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000415113	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000415113	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000415113	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-intron	ENST00000456903	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000456903	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000456903	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000456903	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000456903	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-intron	ENST00000548118	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000548118	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000548118	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000548118	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000548118	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-intron	ENST00000591397	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000591397	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000591397	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000591397	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5UTR-5UTR	ENST00000591397	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-intron	ENST00000328463	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000328463	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000328463	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000328463	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000328463	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-intron	ENST00000546661	ENST00000550241		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000602871		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000394349		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000549164		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
intron-5UTR	ENST00000546661	ENST00000338662		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ATF7	chr12	54020063	-	ATP5G2	chr12	54066429	-
5CDS-intron	ENST00000262320	ENST00000464609		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	AXIN1	chr16	396148	-	ARHGDIG	chr16	318775	+
5CDS-intron	ENST00000262320	ENST00000219409		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	AXIN1	chr16	396148	-	ARHGDIG	chr16	318775	+
5CDS-intron	ENST00000354866	ENST00000464609		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	AXIN1	chr16	396148	-	ARHGDIG	chr16	318775	+
5CDS-intron	ENST00000354866	ENST00000219409		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	AXIN1	chr16	396148	-	ARHGDIG	chr16	318775	+
intron-intron	ENST00000481769	ENST00000464609		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	AXIN1	chr16	396148	-	ARHGDIG	chr16	318775	+
intron-intron	ENST00000481769	ENST00000219409		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	AXIN1	chr16	396148	-	ARHGDIG	chr16	318775	+
In-frame	ENST00000318407	ENST00000318579		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	BOK	chr2	242501891	+	MEOX1	chr17	41721028	-
5CDS-intron	ENST00000318407	ENST00000329168		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	BOK	chr2	242501891	+	MEOX1	chr17	41721028	-
5CDS-intron	ENST00000318407	ENST00000549132		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	BOK	chr2	242501891	+	MEOX1	chr17	41721028	-
5CDS-intron	ENST00000318407	ENST00000393661		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	BOK	chr2	242501891	+	MEOX1	chr17	41721028	-
In-frame	ENST00000409790	ENST00000396560		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
Frame-shit	ENST00000409790	ENST00000396559		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409790	ENST00000561932		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409790	ENST00000543967		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409790	ENST00000356427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409790	ENST00000324570		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
In-frame	ENST00000409552	ENST00000396560		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
Frame-shit	ENST00000409552	ENST00000396559		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409552	ENST00000561932		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409552	ENST00000543967		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409552	ENST00000356427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
5CDS-intron	ENST00000409552	ENST00000324570		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
3UTR-3CDS	ENST00000465491	ENST00000396560		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
3UTR-3CDS	ENST00000465491	ENST00000396559		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
3UTR-intron	ENST00000465491	ENST00000561932		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
3UTR-intron	ENST00000465491	ENST00000543967		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
3UTR-intron	ENST00000465491	ENST00000356427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
3UTR-intron	ENST00000465491	ENST00000324570		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
intron-3CDS	ENST00000381822	ENST00000396560		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
intron-3CDS	ENST00000381822	ENST00000396559		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
intron-intron	ENST00000381822	ENST00000561932		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
intron-intron	ENST00000381822	ENST00000543967		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
intron-intron	ENST00000381822	ENST00000356427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
intron-intron	ENST00000381822	ENST00000324570		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	CLEC16A	chr16	11154879	+	ATF7IP2	chr16	10574736	+
Frame-shit	ENST00000246069	ENST00000545418		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
Frame-shit	ENST00000246069	ENST00000377805		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
Frame-shit	ENST00000246069	ENST00000246090		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
5CDS-3UTR	ENST00000246069	ENST00000467330		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
Frame-shit	ENST00000474024	ENST00000545418		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
Frame-shit	ENST00000474024	ENST00000377805		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
Frame-shit	ENST00000474024	ENST00000246090		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
5CDS-3UTR	ENST00000474024	ENST00000467330		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	DSTN	chr20	17585276	+	BANF2	chr20	17716310	+
In-frame	ENST00000373203	ENST00000377705		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ENG	chr9	130579428	-	NOL9	chr1	6604982	-
In-frame	ENST00000344849	ENST00000377705		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ENG	chr9	130579428	-	NOL9	chr1	6604982	-
Frame-shit	ENST00000480266	ENST00000377705		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ENG	chr9	130579428	-	NOL9	chr1	6604982	-
Frame-shit	ENST00000319349	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000319349	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000319349	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000393664	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000393664	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000538265	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000538265	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545954	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000545954	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000545089	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000545089	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
Frame-shit	ENST00000591713	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5CDS-intron	ENST00000591713	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000323541		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000454838		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000449825		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000323578		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000429789		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000336845		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000528581		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-3CDS	ENST00000586826	ENST00000436108		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
intron-intron	ENST00000586826	ENST00000526714		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ETV4	chr17	41622343	-	CHID1	chr11	870499	-
5UTR-3CDS	ENST00000317683	ENST00000307751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	FBXO46	chr19	46234107	-	LGALS4	chr19	39297235	-
5UTR-5UTR	ENST00000317683	ENST00000597803		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	FBXO46	chr19	46234107	-	LGALS4	chr19	39297235	-
Frame-shit	ENST00000317568	ENST00000421673		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	FRMD8	chr11	65168338	+	MUC6	chr11	1015883	-
intron-3CDS	ENST00000531296	ENST00000421673		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	FRMD8	chr11	65168338	+	MUC6	chr11	1015883	-
Frame-shit	ENST00000355991	ENST00000421673		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	FRMD8	chr11	65168338	+	MUC6	chr11	1015883	-
Frame-shit	ENST00000416776	ENST00000421673		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	FRMD8	chr11	65168338	+	MUC6	chr11	1015883	-
5CDS-intron	ENST00000545168	ENST00000334731		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000545168	ENST00000377031		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000545168	ENST00000486911		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000376989	ENST00000334731		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000376989	ENST00000377031		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000376989	ENST00000486911		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000238018	ENST00000334731		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000238018	ENST00000377031		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000238018	ENST00000486911		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000376986	ENST00000334731		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000376986	ENST00000377031		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000376986	ENST00000486911		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000358399	ENST00000334731		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000358399	ENST00000377031		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
5CDS-intron	ENST00000358399	ENST00000486911		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
3UTR-intron	ENST00000477618	ENST00000334731		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
3UTR-intron	ENST00000477618	ENST00000377031		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
3UTR-intron	ENST00000477618	ENST00000486911		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	GDA	chr9	74817658	+	C9orf85	chr9	74533341	+
In-frame	ENST00000256458	ENST00000256474		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	IRAK2	chr3	10219704	+	VHL	chr3	10191471	+
In-frame	ENST00000256458	ENST00000345392		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	IRAK2	chr3	10219704	+	VHL	chr3	10191471	+
5CDS-3UTR	ENST00000256458	ENST00000477538		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	IRAK2	chr3	10219704	+	VHL	chr3	10191471	+
5CDS-5UTR	ENST00000327300	ENST00000336890		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000327300	ENST00000333070		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000327300	ENST00000373564		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
3UTR-5UTR	ENST00000307714	ENST00000336890		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
3UTR-5UTR	ENST00000307714	ENST00000333070		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
3UTR-5UTR	ENST00000307714	ENST00000373564		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000492989	ENST00000336890		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000492989	ENST00000333070		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
5CDS-5UTR	ENST00000492989	ENST00000373564		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KHDRBS1	chr1	32505174	+	LCK	chr1	32739926	+
In-frame	ENST00000375712	ENST00000375749		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5CDS-intron	ENST00000375712	ENST00000375730		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5CDS-intron	ENST00000375712	ENST00000539210		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5CDS-3UTR	ENST00000375712	ENST00000486717		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
In-frame	ENST00000418717	ENST00000375749		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5CDS-intron	ENST00000418717	ENST00000375730		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5CDS-intron	ENST00000418717	ENST00000539210		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5CDS-3UTR	ENST00000418717	ENST00000486717		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KIF3B	chr20	30915464	+	POFUT1	chr20	30818622	+
5UTR-3CDS	ENST00000261425	ENST00000261427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-3CDS	ENST00000261425	ENST00000295963		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-3UTR	ENST00000261425	ENST00000438068		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-intron	ENST00000261425	ENST00000503368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-intron	ENST00000261425	ENST00000445950		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-3CDS	ENST00000508137	ENST00000261427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-3CDS	ENST00000508137	ENST00000295963		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-3UTR	ENST00000508137	ENST00000438068		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-intron	ENST00000508137	ENST00000503368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
5UTR-intron	ENST00000508137	ENST00000445950		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000504108	ENST00000261427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000504108	ENST00000295963		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3UTR	ENST00000504108	ENST00000438068		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000504108	ENST00000503368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000504108	ENST00000445950		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000359687	ENST00000261427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000359687	ENST00000295963		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3UTR	ENST00000359687	ENST00000438068		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000359687	ENST00000503368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000359687	ENST00000445950		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000381930	ENST00000261427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000381930	ENST00000295963		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3UTR	ENST00000381930	ENST00000438068		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000381930	ENST00000503368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000381930	ENST00000445950		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000261426	ENST00000261427		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3CDS	ENST00000261426	ENST00000295963		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-3UTR	ENST00000261426	ENST00000438068		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000261426	ENST00000503368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
intron-intron	ENST00000261426	ENST00000445950		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	KLHL5	chr4	39046716	+	UBE2K	chr4	39739040	+
Frame-shit	ENST00000302787	ENST00000429429		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
Frame-shit	ENST00000302787	ENST00000489418		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
Frame-shit	ENST00000302787	ENST00000318386		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
5CDS-intron	ENST00000302787	ENST00000488267		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
intron-3CDS	ENST00000512189	ENST00000429429		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
intron-3CDS	ENST00000512189	ENST00000489418		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
intron-3CDS	ENST00000512189	ENST00000318386		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
intron-intron	ENST00000512189	ENST00000488267		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	LETM1	chr4	1821065	-	SLBP	chr4	1705427	-
intron-3CDS	ENST00000377748	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377748	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377748	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377748	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377732	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377732	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377732	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377732	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000400915	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000400915	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000400915	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000400915	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377740	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377740	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377740	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377740	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377737	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377737	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377737	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377737	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000537245	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000537245	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000537245	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000537245	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000544978	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000544978	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000544978	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000544978	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000400913	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000400913	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000400913	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000400913	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-3CDS	ENST00000340850	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-3CDS	ENST00000340850	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-intron	ENST00000340850	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-intron	ENST00000340850	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-3CDS	ENST00000377725	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-3CDS	ENST00000377725	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-intron	ENST00000377725	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
5UTR-intron	ENST00000377725	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377728	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000377728	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377728	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000377728	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000535355	ENST00000598913		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-3CDS	ENST00000535355	ENST00000314471		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000535355	ENST00000594204		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
intron-intron	ENST00000535355	ENST00000596368		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	PLEKHG5	chr1	6550505	-	SAMD4B	chr19	39870606	+
In-frame	ENST00000408982	ENST00000433935		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000408982	ENST00000592813		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000408982	ENST00000269289		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000408982	ENST00000573751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000262477	ENST00000433935		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000262477	ENST00000592813		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000262477	ENST00000269289		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000262477	ENST00000573751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000537505	ENST00000433935		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000537505	ENST00000592813		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000537505	ENST00000269289		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000537505	ENST00000573751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000546142	ENST00000433935		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000546142	ENST00000592813		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000546142	ENST00000269289		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000546142	ENST00000573751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000341923	ENST00000433935		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000341923	ENST00000592813		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000341923	ENST00000269289		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
In-frame	ENST00000341923	ENST00000573751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
intron-3CDS	ENST00000570487	ENST00000433935		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
intron-3CDS	ENST00000570487	ENST00000592813		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
intron-3CDS	ENST00000570487	ENST00000269289		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
intron-3CDS	ENST00000570487	ENST00000573751		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RABEP1	chr17	5185815	+	ZMYND15	chr17	4646598	+
intron-5UTR	ENST00000375114	ENST00000361722		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RALY	chr20	32672615	+	TBKBP1	chr17	45773445	+
intron-5UTR	ENST00000246194	ENST00000361722		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RALY	chr20	32672615	+	TBKBP1	chr17	45773445	+
intron-5UTR	ENST00000493399	ENST00000361722		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	RALY	chr20	32672615	+	TBKBP1	chr17	45773445	+
5UTR-5UTR	ENST00000222345	ENST00000340740		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
5UTR-5UTR	ENST00000222345	ENST00000598904		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
5UTR-5UTR	ENST00000222345	ENST00000591812		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
5UTR-intron	ENST00000222345	ENST00000602238		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
intron-5UTR	ENST00000476317	ENST00000340740		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
intron-5UTR	ENST00000476317	ENST00000598904		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
intron-5UTR	ENST00000476317	ENST00000591812		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
intron-intron	ENST00000476317	ENST00000602238		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SIPA1L3	chr19	38397998	+	RINL	chr19	39362510	-
intron-3CDS	ENST00000445403	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000445403	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000445403	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000445403	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000445403	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000445403	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000445403	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-intron	ENST00000445403	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-3CDS	ENST00000373578	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5UTR-intron	ENST00000373578	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000360723	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-intron	ENST00000360723	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000358208	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-intron	ENST00000358208	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373567	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-intron	ENST00000373567	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000373558	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-intron	ENST00000373558	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000373184		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000373187		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000356100		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000373190		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000373193		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000373198		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-3CDS	ENST00000477066	ENST00000373201		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
intron-intron	ENST00000477066	ENST00000485499		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	SRC	chr20	35993680	+	PTPRT	chr20	40790182	-
5CDS-3UTR	ENST00000219476	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
5CDS-3UTR	ENST00000382538	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
5CDS-3UTR	ENST00000401874	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
5CDS-3UTR	ENST00000353929	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
5CDS-3UTR	ENST00000439673	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
5CDS-3UTR	ENST00000350773	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
5CDS-3UTR	ENST00000568454	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
intron-3UTR	ENST00000568366	ENST00000568546		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TSC2	chr16	2100488	+	TBL3	chr16	2029879	+
intron-intron	ENST00000346141	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000346141	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000346141	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000346141	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000346141	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000325752	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000325752	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000325752	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000325752	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000325752	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000340993	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000340993	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000340993	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000340993	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000340993	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000394239	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000394239	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000394239	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000394239	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000394239	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000592426	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000592426	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000592426	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000592426	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000592426	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000376094	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000376094	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000376094	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000376094	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000376094	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000539018	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000539018	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000539018	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000539018	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000539018	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000591611	ENST00000393038		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000591611	ENST00000537860		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000591611	ENST00000409433		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000591611	ENST00000470557		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
intron-intron	ENST00000591611	ENST00000579915		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	TUBD1	chr17	57955588	-	PTRH2	chr17	57756880	-
5CDS-intron	ENST00000351842	ENST00000324350		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351842	ENST00000373191		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351842	ENST00000397828		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000351842	ENST00000246314		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000351842	ENST00000471099		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000265560	ENST00000324350		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000265560	ENST00000373191		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000265560	ENST00000397828		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000265560	ENST00000246314		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000265560	ENST00000471099		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
intron-intron	ENST00000488520	ENST00000324350		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
intron-intron	ENST00000488520	ENST00000373191		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
intron-intron	ENST00000488520	ENST00000397828		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
intron-5UTR	ENST00000488520	ENST00000246314		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
intron-intron	ENST00000488520	ENST00000471099		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000416417	ENST00000324350		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000416417	ENST00000373191		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000416417	ENST00000397828		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000416417	ENST00000246314		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000416417	ENST00000471099		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000415188	ENST00000324350		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000415188	ENST00000373191		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000415188	ENST00000397828		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000415188	ENST00000246314		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
5CDS-intron	ENST00000415188	ENST00000471099		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	USP4	chr3	49377357	-	AGO3	chr1	36469942	+
In-frame	ENST00000395996	ENST00000520643		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000395996	ENST00000251809		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000395996	ENST00000520508		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000395996	ENST00000388798		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000395996	ENST00000523302		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000520643		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000251809		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000520508		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000358544	ENST00000388798		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000358544	ENST00000523302		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000520643		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000251809		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000520508		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000357162	ENST00000388798		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000357162	ENST00000523302		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000355155	ENST00000520643		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000355155	ENST00000251809		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000355155	ENST00000520508		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
In-frame	ENST00000355155	ENST00000388798		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
5CDS-intron	ENST00000355155	ENST00000523302		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000520643		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000251809		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000520508		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000441350	ENST00000388798		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
intron-intron	ENST00000441350	ENST00000523302		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
3UTR-3CDS	ENST00000521932	ENST00000520643		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
3UTR-3CDS	ENST00000521932	ENST00000251809		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
3UTR-3CDS	ENST00000521932	ENST00000520508		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
3UTR-3CDS	ENST00000521932	ENST00000388798		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
3UTR-intron	ENST00000521932	ENST00000523302		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	VPS13B	chr8	100205285	+	SPAG1	chr8	101203618	+
intron-3CDS	ENST00000322357	ENST00000542601		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ZBTB7A	chr19	4060602	-	COMP	chr19	18899451	-
intron-3CDS	ENST00000322357	ENST00000222271		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ZBTB7A	chr19	4060602	-	COMP	chr19	18899451	-
intron-3CDS	ENST00000322357	ENST00000425807		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ZBTB7A	chr19	4060602	-	COMP	chr19	18899451	-
intron-3CDS	ENST00000601588	ENST00000542601		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ZBTB7A	chr19	4060602	-	COMP	chr19	18899451	-
intron-3CDS	ENST00000601588	ENST00000222271		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ZBTB7A	chr19	4060602	-	COMP	chr19	18899451	-
intron-3CDS	ENST00000601588	ENST00000425807		TCGA	LD	STAD	TCGA-VQ-A8PE-01A	ZBTB7A	chr19	4060602	-	COMP	chr19	18899451	-
Frame-shit	ENST00000293217	ENST00000607838		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000591724		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000332065		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000589210		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000335146		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000467929		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000405575		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000411744		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000293217	ENST00000406660		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
Frame-shit	ENST00000537812	ENST00000607838		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000591724		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000332065		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000589210		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000335146		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000467929		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000405575		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000411744		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000537812	ENST00000406660		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
Frame-shit	ENST00000301608	ENST00000607838		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000591724		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000332065		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000589210		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000335146		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000467929		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000405575		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000411744		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000301608	ENST00000406660		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-3CDS	ENST00000591857	ENST00000607838		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000591724		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000332065		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000589210		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000335146		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000467929		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000405575		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000411744		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000591857	ENST00000406660		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ACOX1	chr17	73951647	-	EXOC7	chr17	74090662	-
5UTR-3CDS	ENST00000396029	ENST00000338380		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ADNP	chr20	49545188	-	SLPI	chr20	43882374	-
intron-3CDS	ENST00000396032	ENST00000338380		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ADNP	chr20	49545188	-	SLPI	chr20	43882374	-
intron-3CDS	ENST00000371602	ENST00000338380		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ADNP	chr20	49545188	-	SLPI	chr20	43882374	-
intron-3CDS	ENST00000349014	ENST00000338380		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	ADNP	chr20	49545188	-	SLPI	chr20	43882374	-
5UTR-3CDS	ENST00000456731	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-3CDS	ENST00000456731	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-intron	ENST00000456731	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-3CDS	ENST00000367537	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-3CDS	ENST00000367537	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-intron	ENST00000367537	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-3CDS	ENST00000508461	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-3CDS	ENST00000508461	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5UTR-intron	ENST00000508461	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
Frame-shit	ENST00000347615	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
Frame-shit	ENST00000347615	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000347615	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
Frame-shit	ENST00000507469	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
Frame-shit	ENST00000507469	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000507469	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
Frame-shit	ENST00000515829	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
Frame-shit	ENST00000515829	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
5CDS-intron	ENST00000515829	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000507406	ENST00000493293		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
intron-3CDS	ENST00000507406	ENST00000264144		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
intron-intron	ENST00000507406	ENST00000461729		TCGA	LD	STAD	TCGA-VQ-A8PH-01A	SMG7	chr1	183441784	+	LAMC2	chr1	183177016	+
intron-5UTR	ENST00000269701	ENST00000344063		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000431533		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000428193		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000558815		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000560583		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000560055		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000559463		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000558131		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-5UTR	ENST00000269701	ENST00000558752		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
intron-intron	ENST00000269701	ENST00000458349		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AKAP8	chr19	15466118	-	RPL28	chr19	55897718	+
5UTR-3CDS	ENST00000262320	ENST00000199706		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-intron	ENST00000262320	ENST00000429738		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-intron	ENST00000262320	ENST00000389675		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-3CDS	ENST00000354866	ENST00000199706		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-intron	ENST00000354866	ENST00000429738		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-intron	ENST00000354866	ENST00000389675		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-3CDS	ENST00000481769	ENST00000199706		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-intron	ENST00000481769	ENST00000429738		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
5UTR-intron	ENST00000481769	ENST00000389675		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	AXIN1	chr16	402369	-	MRPL28	chr16	418635	-
Frame-shit	ENST00000225792	ENST00000336915		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
In-frame	ENST00000225792	ENST00000584924		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
Frame-shit	ENST00000450599	ENST00000336915		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
In-frame	ENST00000450599	ENST00000584924		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
Frame-shit	ENST00000578804	ENST00000336915		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
In-frame	ENST00000578804	ENST00000584924		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
5UTR-3CDS	ENST00000580026	ENST00000336915		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
5UTR-3CDS	ENST00000580026	ENST00000584924		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	DDX5	chr17	62496667	-	SKAP1	chr17	46474147	-
5CDS-intron	ENST00000332149	ENST00000490220		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-5UTR	ENST00000332149	ENST00000398600		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-5UTR	ENST00000332149	ENST00000398598		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000332149	ENST00000455164		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000332149	ENST00000288383		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000398585	ENST00000490220		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-5UTR	ENST00000398585	ENST00000398600		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-5UTR	ENST00000398585	ENST00000398598		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000398585	ENST00000455164		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000398585	ENST00000288383		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000458356	ENST00000490220		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-5UTR	ENST00000458356	ENST00000398600		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-5UTR	ENST00000458356	ENST00000398598		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000458356	ENST00000455164		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
5CDS-intron	ENST00000458356	ENST00000288383		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
intron-intron	ENST00000497881	ENST00000490220		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
intron-5UTR	ENST00000497881	ENST00000398600		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
intron-5UTR	ENST00000497881	ENST00000398598		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
intron-intron	ENST00000497881	ENST00000455164		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
intron-intron	ENST00000497881	ENST00000288383		TCGA	LD	STAD	TCGA-VQ-A8PJ-01A	TMPRSS2	chr21	42845252	-	MX1	chr21	42802460	+
intron-3CDS	ENST00000302538	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000302538	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000544583	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000544583	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000572441	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000572441	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000574437	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000574437	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000291107	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000291107	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000543210	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000543210	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000536794	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000536794	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000573895	ENST00000456349		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
intron-3CDS	ENST00000573895	ENST00000263080		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	ABR	chr17	1132087	-	ASPA	chr17	3384897	+
5CDS-5UTR	ENST00000361545	ENST00000324896		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000353920		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000346152		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000416070		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000361545	ENST00000443166		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-intron	ENST00000361545	ENST00000438130		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000324896		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000353920		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000346152		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000416070		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000223398	ENST00000443166		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-intron	ENST00000223398	ENST00000438130		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000324896		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000353920		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000346152		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000416070		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000395060	ENST00000443166		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-intron	ENST00000395060	ENST00000438130		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	CLIP2	chr7	73731997	+	GTF2I	chr7	74103458	+
5CDS-5UTR	ENST00000339859	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000339859	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000339859	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000408019	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000408019	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000408019	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000428547	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000428547	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000428547	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5UTR-5UTR	ENST00000394811	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5UTR-5UTR	ENST00000394811	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5UTR-5UTR	ENST00000394811	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000497106	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000497106	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000497106	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000422491	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000422491	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
intron-5UTR	ENST00000422491	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000319786	ENST00000355264		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000319786	ENST00000372745		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-5UTR	ENST00000319786	ENST00000487653		TCGA	LD	STAD	TCGA-VQ-A8PK-01A	USP54	chr10	75331179	-	AP3M1	chr10	75898140	-
5CDS-intron	ENST00000355078	ENST00000350250		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000355078	ENST00000508638		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000355078	ENST00000502810		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-3UTR	ENST00000355078	ENST00000508883		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000355078	ENST00000290431		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000302763	ENST00000350250		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000302763	ENST00000508638		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000302763	ENST00000502810		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-3UTR	ENST00000302763	ENST00000508883		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000302763	ENST00000290431		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000518825	ENST00000350250		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000518825	ENST00000508638		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000518825	ENST00000502810		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-3UTR	ENST00000518825	ENST00000508883		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
5CDS-intron	ENST00000518825	ENST00000290431		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000520400	ENST00000350250		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000520400	ENST00000508638		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000520400	ENST00000502810		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-3UTR	ENST00000520400	ENST00000508883		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000520400	ENST00000290431		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000540387	ENST00000350250		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000540387	ENST00000508638		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000540387	ENST00000502810		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-3UTR	ENST00000540387	ENST00000508883		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
intron-intron	ENST00000540387	ENST00000290431		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	CTNNA1	chr5	138163407	+	PKD2L2	chr5	137278073	+
3UTR-3CDS	ENST00000462274	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
3UTR-3CDS	ENST00000462274	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
3UTR-3CDS	ENST00000462274	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
3UTR-3UTR	ENST00000462274	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
3UTR-intron	ENST00000462274	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
3UTR-intron	ENST00000462274	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
5UTR-3CDS	ENST00000338785	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
5UTR-3CDS	ENST00000338785	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
5UTR-3CDS	ENST00000338785	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
5UTR-3UTR	ENST00000338785	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
5UTR-intron	ENST00000338785	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
5UTR-intron	ENST00000338785	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000451934	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000451934	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000451934	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3UTR	ENST00000451934	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000451934	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000451934	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000321219	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000321219	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000321219	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3UTR	ENST00000321219	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000321219	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000321219	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000339659	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000339659	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000339659	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3UTR	ENST00000339659	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000339659	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000339659	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000398960	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000398960	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000398960	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3UTR	ENST00000398960	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000398960	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000398960	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000398956	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000398956	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000398956	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3UTR	ENST00000398956	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000398956	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000398956	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000455387	ENST00000355666		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000455387	ENST00000399017		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000455387	ENST00000354749		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3UTR	ENST00000455387	ENST00000479930		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000455387	ENST00000540756		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-intron	ENST00000455387	ENST00000399010		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	DYRK1A	chr21	38739930	+	TTC3	chr21	38567976	+
intron-3CDS	ENST00000397063	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000397063	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000397063	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000397063	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000397063	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-intron	ENST00000397063	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
In-frame	ENST00000397062	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
In-frame	ENST00000397062	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
In-frame	ENST00000397062	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
In-frame	ENST00000397062	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
In-frame	ENST00000397062	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
5CDS-intron	ENST00000397062	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000446151	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000446151	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000446151	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000446151	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000446151	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-intron	ENST00000446151	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000464747	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000464747	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000464747	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000464747	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000464747	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-intron	ENST00000464747	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000423513	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000423513	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000423513	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000423513	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-3CDS	ENST00000423513	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
intron-intron	ENST00000423513	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	NFE2L2	chr2	178129260	-	VMP1	chr17	57851115	+
In-frame	ENST00000401088	ENST00000376048		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
In-frame	ENST00000401088	ENST00000311066		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
In-frame	ENST00000401088	ENST00000235372		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-3UTR	ENST00000401088	ENST00000502727		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401088	ENST00000413440		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401088	ENST00000343137		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401088	ENST00000503842		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401088	ENST00000505823		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
In-frame	ENST00000471507	ENST00000376048		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
In-frame	ENST00000471507	ENST00000311066		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
In-frame	ENST00000471507	ENST00000235372		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-3UTR	ENST00000471507	ENST00000502727		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000471507	ENST00000413440		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000471507	ENST00000343137		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000471507	ENST00000503842		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000471507	ENST00000505823		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000401089	ENST00000376048		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000401089	ENST00000311066		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000401089	ENST00000235372		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-3UTR	ENST00000401089	ENST00000502727		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401089	ENST00000413440		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401089	ENST00000343137		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401089	ENST00000503842		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000401089	ENST00000505823		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000375590	ENST00000376048		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000375590	ENST00000311066		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000375590	ENST00000235372		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-3UTR	ENST00000375590	ENST00000502727		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000375590	ENST00000413440		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000375590	ENST00000343137		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000375590	ENST00000503842		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000375590	ENST00000505823		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000492354	ENST00000376048		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000492354	ENST00000311066		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
Frame-shit	ENST00000492354	ENST00000235372		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-3UTR	ENST00000492354	ENST00000502727		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000492354	ENST00000413440		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000492354	ENST00000343137		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000492354	ENST00000503842		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
5CDS-intron	ENST00000492354	ENST00000505823		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-3CDS	ENST00000472461	ENST00000376048		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-3CDS	ENST00000472461	ENST00000311066		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-3CDS	ENST00000472461	ENST00000235372		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-3UTR	ENST00000472461	ENST00000502727		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-intron	ENST00000472461	ENST00000413440		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-intron	ENST00000472461	ENST00000343137		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-intron	ENST00000472461	ENST00000503842		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
intron-intron	ENST00000472461	ENST00000505823		TCGA	LD	STAD	TCGA-VQ-A8PM-01A	SZRD1	chr1	16693803	+	PRDM2	chr1	14075856	+
In-frame	ENST00000309909	ENST00000265729		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
In-frame	ENST00000309909	ENST00000419179		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
In-frame	ENST00000309909	ENST00000490437		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
In-frame	ENST00000309909	ENST00000394641		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
In-frame	ENST00000309909	ENST00000431660		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000455858	ENST00000265729		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000455858	ENST00000419179		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000455858	ENST00000490437		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000455858	ENST00000394641		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000455858	ENST00000431660		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000551773	ENST00000265729		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000551773	ENST00000419179		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000551773	ENST00000490437		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000551773	ENST00000394641		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
intron-3CDS	ENST00000551773	ENST00000431660		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	FBXW8	chr12	117349160	+	SRI	chr7	87846506	-
5CDS-5UTR	ENST00000263390	ENST00000240727		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	MED26	chr19	16738683	-	ZSCAN18	chr19	58601753	-
5CDS-5UTR	ENST00000263390	ENST00000601144		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	MED26	chr19	16738683	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000263390	ENST00000421612		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	MED26	chr19	16738683	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000263390	ENST00000600404		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	MED26	chr19	16738683	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000263390	ENST00000595944		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	MED26	chr19	16738683	-	ZSCAN18	chr19	58601753	-
5CDS-intron	ENST00000263390	ENST00000594567		TCGA	LD	STAD	TCGA-VQ-A8PQ-01A	MED26	chr19	16738683	-	ZSCAN18	chr19	58601753	-
Frame-shit	ENST00000481646	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
Frame-shit	ENST00000481646	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000469044	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000469044	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
5UTR-3CDS	ENST00000491704	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
5UTR-3CDS	ENST00000491704	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
Frame-shit	ENST00000358441	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
Frame-shit	ENST00000358441	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000489213	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000489213	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000461822	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000461822	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000485396	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000485396	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
Frame-shit	ENST00000471453	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
Frame-shit	ENST00000471453	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000470821	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000470821	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000393058	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000393058	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000538260	ENST00000343735		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
intron-3CDS	ENST00000538260	ENST00000183605		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	ARMC8	chr3	137907372	+	CLDN18	chr3	137748639	+
In-frame	ENST00000356462	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000356462	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000400345	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000400345	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
intron-3CDS	ENST00000589054	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
intron-intron	ENST00000589054	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000256832	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000256832	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000382850	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000382850	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000256830	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000256830	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
intron-3CDS	ENST00000588516	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
intron-intron	ENST00000588516	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000456986	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000456986	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000435432	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000435432	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000357895	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000357895	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000586263	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000586263	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000456173	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000456173	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
In-frame	ENST00000431212	ENST00000361673		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
5CDS-intron	ENST00000431212	ENST00000587399		TCGA	LD	STAD	TCGA-VQ-A8PX-01A	NEDD4L	chr18	56033460	+	ALPK2	chr18	56191294	-
Frame-shit	ENST00000359373	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000359373	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000359373	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000359373	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000359373	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000359373	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-3CDS	ENST00000495878	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-3CDS	ENST00000495878	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-3CDS	ENST00000495878	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-3CDS	ENST00000495878	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-3CDS	ENST00000495878	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-intron	ENST00000495878	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000455638	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000455638	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000455638	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000455638	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000455638	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000455638	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000393605	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000393605	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000393605	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000393605	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000393605	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000393605	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000334211	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000334211	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000334211	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000334211	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000334211	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000334211	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
In-frame	ENST00000393609	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
In-frame	ENST00000393609	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
In-frame	ENST00000393609	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
In-frame	ENST00000393609	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
In-frame	ENST00000393609	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000393609	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000426523	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000426523	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000426523	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000426523	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000426523	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000426523	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000429686	ENST00000311172		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000429686	ENST00000409314		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000429686	ENST00000409418		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000429686	ENST00000458644		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
Frame-shit	ENST00000429686	ENST00000409853		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5CDS-intron	ENST00000429686	ENST00000409263		TCGA	LD	STAD	TCGA-VQ-A91K-01A	ARAP1	chr11	72406025	-	FCHSD2	chr11	72579071	-
5UTR-3CDS	ENST00000232125	ENST00000490131		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
5UTR-3CDS	ENST00000232125	ENST00000498619		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
5UTR-3CDS	ENST00000232125	ENST00000296154		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
Frame-shit	ENST00000477892	ENST00000490131		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
Frame-shit	ENST00000477892	ENST00000498619		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
Frame-shit	ENST00000477892	ENST00000296154		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
Frame-shit	ENST00000469967	ENST00000490131		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
Frame-shit	ENST00000469967	ENST00000498619		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
Frame-shit	ENST00000469967	ENST00000296154		TCGA	LD	STAD	TCGA-VQ-A91K-01A	FAM162A	chr3	122103146	+	CASR	chr3	121994659	+
In-frame	ENST00000457424	ENST00000358161		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000457424	ENST00000372739		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000457424	ENST00000372731		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
5CDS-intron	ENST00000457424	ENST00000475367		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000426172	ENST00000358161		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000426172	ENST00000372739		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000426172	ENST00000372731		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
5CDS-intron	ENST00000426172	ENST00000475367		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000503780	ENST00000358161		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000503780	ENST00000372739		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000503780	ENST00000372731		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
5CDS-intron	ENST00000503780	ENST00000475367		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000296519	ENST00000358161		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000296519	ENST00000372739		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
In-frame	ENST00000296519	ENST00000372731		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
5CDS-intron	ENST00000296519	ENST00000475367		TCGA	LD	STAD	TCGA-VQ-A91S-01A	CEP44	chr4	175223337	+	SPTAN1	chr9	131353756	+
5CDS-5UTR	ENST00000316673	ENST00000262605		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000316673	ENST00000372904		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000316673	ENST00000372906		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000609795	ENST00000262605		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000609795	ENST00000372904		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000609795	ENST00000372906		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000457232	ENST00000262605		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000457232	ENST00000372904		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
5CDS-5UTR	ENST00000457232	ENST00000372906		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000443598	ENST00000262605		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000443598	ENST00000372904		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000443598	ENST00000372906		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000316099	ENST00000262605		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000316099	ENST00000372904		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000316099	ENST00000372906		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000415691	ENST00000262605		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000415691	ENST00000372904		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
intron-5UTR	ENST00000415691	ENST00000372906		TCGA	LD	STAD	TCGA-VQ-A91S-01A	HNF4A	chr20	42984493	+	TTPAL	chr20	43108625	+
Frame-shit	ENST00000424082	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000424082	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000259351	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000259351	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000394022	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000394022	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000373436	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000373436	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000373434	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
Frame-shit	ENST00000373434	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
intron-3CDS	ENST00000394011	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
intron-3CDS	ENST00000394011	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
intron-3CDS	ENST00000480993	ENST00000342483		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
intron-3CDS	ENST00000480993	ENST00000543471		TCGA	LD	STAD	TCGA-VQ-A91S-01A	RALGPS1	chr9	129937061	+	ZNF79	chr9	130197369	+
In-frame	ENST00000342480	ENST00000539563		TCGA	LD	STAD	TCGA-VQ-A91U-01A	PODXL2	chr3	127358366	+	LSAMP	chr3	116163802	-
Frame-shit	ENST00000342480	ENST00000490035		TCGA	LD	STAD	TCGA-VQ-A91U-01A	PODXL2	chr3	127358366	+	LSAMP	chr3	116163802	-
5CDS-intron	ENST00000342480	ENST00000498645		TCGA	LD	STAD	TCGA-VQ-A91U-01A	PODXL2	chr3	127358366	+	LSAMP	chr3	116163802	-
5CDS-5UTR	ENST00000580825	ENST00000474210		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
5CDS-5UTR	ENST00000580825	ENST00000394231		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
5CDS-5UTR	ENST00000580825	ENST00000577810		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000254079	ENST00000474210		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000254079	ENST00000394231		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000254079	ENST00000577810		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000579000	ENST00000474210		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000579000	ENST00000394231		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000579000	ENST00000577810		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000394265	ENST00000474210		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000394265	ENST00000394231		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000394265	ENST00000577810		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000394267	ENST00000474210		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000394267	ENST00000394231		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
3UTR-5UTR	ENST00000394267	ENST00000577810		TCGA	LD	STAD	TCGA-VQ-A91X-01A	PPP1R1B	chr17	37792257	+	MIEN1	chr17	37886014	-
In-frame	ENST00000336308	ENST00000352035		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000336308	ENST00000590151		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000336308	ENST00000353196		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000336308	ENST00000537919		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000336308	ENST00000393896		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
5CDS-intron	ENST00000336308	ENST00000588779		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
intron-3CDS	ENST00000578232	ENST00000352035		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
intron-3CDS	ENST00000578232	ENST00000590151		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
intron-3CDS	ENST00000578232	ENST00000353196		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
intron-3CDS	ENST00000578232	ENST00000537919		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
intron-3CDS	ENST00000578232	ENST00000393896		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
intron-intron	ENST00000578232	ENST00000588779		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000544210	ENST00000352035		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000544210	ENST00000590151		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000544210	ENST00000353196		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000544210	ENST00000537919		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000544210	ENST00000393896		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
5CDS-intron	ENST00000544210	ENST00000588779		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000394250	ENST00000352035		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000394250	ENST00000590151		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000394250	ENST00000353196		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000394250	ENST00000537919		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000394250	ENST00000393896		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
5CDS-intron	ENST00000394250	ENST00000588779		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
Frame-shit	ENST00000580611	ENST00000352035		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
Frame-shit	ENST00000580611	ENST00000590151		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
Frame-shit	ENST00000580611	ENST00000353196		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
Frame-shit	ENST00000580611	ENST00000537919		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
Frame-shit	ENST00000580611	ENST00000393896		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
5CDS-intron	ENST00000580611	ENST00000588779		TCGA	LD	STAD	TCGA-VQ-A91X-01A	STARD3	chr17	37818597	+	ACLY	chr17	40054092	-
In-frame	ENST00000374759	ENST00000186436		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	SLC38A10	chr17	79244718	-	TMEM131	chr2	98422166	-
5CDS-intron	ENST00000374759	ENST00000425805		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	SLC38A10	chr17	79244718	-	TMEM131	chr2	98422166	-
In-frame	ENST00000288439	ENST00000186436		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	SLC38A10	chr17	79244718	-	TMEM131	chr2	98422166	-
5CDS-intron	ENST00000288439	ENST00000425805		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	SLC38A10	chr17	79244718	-	TMEM131	chr2	98422166	-
5UTR-3CDS	ENST00000546352	ENST00000186436		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	SLC38A10	chr17	79244718	-	TMEM131	chr2	98422166	-
5UTR-intron	ENST00000546352	ENST00000425805		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	SLC38A10	chr17	79244718	-	TMEM131	chr2	98422166	-
In-frame	ENST00000427277	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000427277	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000427277	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000427277	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5CDS-intron	ENST00000427277	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000297954	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000297954	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000297954	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000297954	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5CDS-intron	ENST00000297954	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
3UTR-3CDS	ENST00000395475	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
3UTR-3CDS	ENST00000395475	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
3UTR-3CDS	ENST00000395475	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
3UTR-3CDS	ENST00000395475	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
3UTR-intron	ENST00000395475	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5UTR-3CDS	ENST00000356055	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5UTR-3CDS	ENST00000356055	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5UTR-3CDS	ENST00000356055	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5UTR-3CDS	ENST00000356055	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5UTR-intron	ENST00000356055	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000349097	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000349097	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000349097	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000349097	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5CDS-intron	ENST00000349097	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000395477	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000395477	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000395477	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
In-frame	ENST00000395477	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5CDS-intron	ENST00000395477	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
intron-3CDS	ENST00000471076	ENST00000277165		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
intron-3CDS	ENST00000471076	ENST00000375389		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
intron-3CDS	ENST00000471076	ENST00000340893		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
intron-3CDS	ENST00000471076	ENST00000333936		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
intron-intron	ENST00000471076	ENST00000475933		TCGA	LD	STAD	TCGA-VQ-A91Z-01A	WNK2	chr9	96021896	+	FAM120A	chr9	96259753	+
5CDS-5UTR	ENST00000295851	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000295851	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000295851	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000295851	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000261017	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261017	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000261017	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000430418	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000430418	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000430418	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000424558	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000424558	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000424558	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000261016	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000261016	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000261016	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000422511	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-5UTR	ENST00000422511	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000422511	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-intron	ENST00000430574	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000430574	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-intron	ENST00000430574	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000409718		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000358677		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000409988		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-intron	ENST00000261018	ENST00000409385		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000451764		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000360760		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000409140		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000409755		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-5UTR	ENST00000261018	ENST00000409151		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
intron-intron	ENST00000261018	ENST00000460095		TCGA	LD	STAD	TCGA-VQ-A922-01A	ABI2	chr2	204231767	+	SPATS2L	chr2	201253946	+
5CDS-intron	ENST00000343245	ENST00000369022		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-5UTR	ENST00000343245	ENST00000369020		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000343245	ENST00000369025		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000343245	ENST00000369021		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000343245	ENST00000479803		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369070	ENST00000369022		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-5UTR	ENST00000369070	ENST00000369020		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369070	ENST00000369025		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369070	ENST00000369021		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369070	ENST00000479803		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369076	ENST00000369022		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-5UTR	ENST00000369076	ENST00000369020		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369076	ENST00000369025		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369076	ENST00000369021		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
5CDS-intron	ENST00000369076	ENST00000479803		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000360666	ENST00000369022		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-5UTR	ENST00000360666	ENST00000369020		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000360666	ENST00000369025		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000360666	ENST00000369021		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000360666	ENST00000479803		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000475645	ENST00000369022		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-5UTR	ENST00000475645	ENST00000369020		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000475645	ENST00000369025		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000475645	ENST00000369021		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
intron-intron	ENST00000475645	ENST00000479803		TCGA	LD	STAD	TCGA-VQ-A922-01A	ATG5	chr6	106727536	-	SCML4	chr6	108093590	-
Frame-shit	ENST00000374023	ENST00000393660		TCGA	LD	STAD	TCGA-VQ-A922-01A	C6orf106	chr6	34614378	-	DEFB110	chr6	49976984	-
5CDS-intron	ENST00000374023	ENST00000371148		TCGA	LD	STAD	TCGA-VQ-A922-01A	C6orf106	chr6	34614378	-	DEFB110	chr6	49976984	-
intron-3CDS	ENST00000374026	ENST00000393660		TCGA	LD	STAD	TCGA-VQ-A922-01A	C6orf106	chr6	34614378	-	DEFB110	chr6	49976984	-
intron-intron	ENST00000374026	ENST00000371148		TCGA	LD	STAD	TCGA-VQ-A922-01A	C6orf106	chr6	34614378	-	DEFB110	chr6	49976984	-
In-frame	ENST00000374021	ENST00000393660		TCGA	LD	STAD	TCGA-VQ-A922-01A	C6orf106	chr6	34614378	-	DEFB110	chr6	49976984	-
5CDS-intron	ENST00000374021	ENST00000371148		TCGA	LD	STAD	TCGA-VQ-A922-01A	C6orf106	chr6	34614378	-	DEFB110	chr6	49976984	-
Frame-shit	ENST00000401084	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000401084	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000401084	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000401084	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264203	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264203	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264203	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264203	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375142	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375142	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375142	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375142	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000433834	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000433834	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000433834	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000433834	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264202	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264202	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264202	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264202	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000482808	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000482808	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000482808	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000482808	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375144	ENST00000294543		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375144	ENST00000375127		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375144	ENST00000489814		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375144	ENST00000375122		TCGA	LD	STAD	TCGA-VQ-A922-01A	CAPZB	chr1	19711999	-	TMCO4	chr1	20027378	-
In-frame	ENST00000371477	ENST00000372236		TCGA	LD	STAD	TCGA-VQ-A922-01A	CDC5L	chr6	44376369	+	POLH	chr6	43568725	+
In-frame	ENST00000371477	ENST00000535400		TCGA	LD	STAD	TCGA-VQ-A922-01A	CDC5L	chr6	44376369	+	POLH	chr6	43568725	+
In-frame	ENST00000371477	ENST00000372226		TCGA	LD	STAD	TCGA-VQ-A922-01A	CDC5L	chr6	44376369	+	POLH	chr6	43568725	+
5UTR-3CDS	ENST00000361283	ENST00000360467		TCGA	LD	STAD	TCGA-VQ-A922-01A	CHAMP1	chr13	115086707	+	COL4A2	chr13	111160282	+
5UTR-intron	ENST00000361283	ENST00000462309		TCGA	LD	STAD	TCGA-VQ-A922-01A	CHAMP1	chr13	115086707	+	COL4A2	chr13	111160282	+
3UTR-3CDS	ENST00000478022	ENST00000360467		TCGA	LD	STAD	TCGA-VQ-A922-01A	CHAMP1	chr13	115086707	+	COL4A2	chr13	111160282	+
3UTR-intron	ENST00000478022	ENST00000462309		TCGA	LD	STAD	TCGA-VQ-A922-01A	CHAMP1	chr13	115086707	+	COL4A2	chr13	111160282	+
Frame-shit	ENST00000361383	ENST00000557943		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000361383	ENST00000433983		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000361383	ENST00000560726		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
In-frame	ENST00000361383	ENST00000559602		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
5CDS-intron	ENST00000361383	ENST00000560816		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000405275	ENST00000557943		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000405275	ENST00000433983		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000405275	ENST00000560726		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
In-frame	ENST00000405275	ENST00000559602		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
5CDS-intron	ENST00000405275	ENST00000560816		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000373473	ENST00000557943		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000373473	ENST00000433983		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000373473	ENST00000560726		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
In-frame	ENST00000373473	ENST00000559602		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
5CDS-intron	ENST00000373473	ENST00000560816		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
3UTR-3CDS	ENST00000473857	ENST00000557943		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
3UTR-3CDS	ENST00000473857	ENST00000433983		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
3UTR-3CDS	ENST00000473857	ENST00000560726		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
3UTR-3CDS	ENST00000473857	ENST00000559602		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
3UTR-intron	ENST00000473857	ENST00000560816		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000373469	ENST00000557943		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000373469	ENST00000433983		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
Frame-shit	ENST00000373469	ENST00000560726		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
In-frame	ENST00000373469	ENST00000559602		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
5CDS-intron	ENST00000373469	ENST00000560816		TCGA	LD	STAD	TCGA-VQ-A922-01A	CTNNBL1	chr20	36431450	+	ETFA	chr15	76508938	-
intron-3CDS	ENST00000324771	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000324771	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000324771	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000324771	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000324771	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000324771	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000418800	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000418800	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000418800	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000418800	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000418800	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000418800	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000454612	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000454612	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000454612	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000454612	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-3CDS	ENST00000454612	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
5UTR-intron	ENST00000454612	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376569	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376569	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376569	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376569	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376569	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376569	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000446312	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000446312	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000446312	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000446312	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000446312	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000446312	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376575	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376575	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376575	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376575	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376575	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376575	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376570	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376570	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376570	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376570	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376570	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376570	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376568	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376568	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376568	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376568	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376568	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376568	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000452441	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000452441	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000452441	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000452441	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000452441	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000452441	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508312	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508312	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508312	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508312	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508312	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508312	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376567	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376567	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376567	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376567	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000376567	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000376567	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000513240	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000513240	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000513240	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000513240	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000513240	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000513240	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508472	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508472	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508472	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508472	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000508472	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000508472	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000361741	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000361741	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000361741	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000361741	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000361741	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000361741	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000434428	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000434428	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000434428	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000434428	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000434428	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000434428	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000483193	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000483193	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000483193	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000483193	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000483193	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000483193	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000383377	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000383377	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000383377	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000383377	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000383377	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000383377	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400414	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400414	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400414	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400414	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400414	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400414	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000259875	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000259875	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000259875	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000259875	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000259875	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000259875	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552721	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552721	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552721	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552721	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552721	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552721	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000553015	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000553015	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000553015	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000553015	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000553015	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000553015	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000468225	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000468225	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000468225	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000468225	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000468225	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000468225	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400411	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400411	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400411	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400411	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400411	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400411	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400410	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400410	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400410	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400410	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400410	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400410	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000412329	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000412329	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000412329	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000412329	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000412329	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000412329	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000449518	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000449518	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000449518	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000449518	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000449518	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000449518	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000427053	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000427053	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000427053	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000427053	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000427053	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000427053	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548962	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548962	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548962	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548962	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548962	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548962	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548133	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548133	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548133	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548133	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548133	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548133	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000462241	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000462241	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000462241	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000462241	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000462241	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000462241	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000415092	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000415092	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000415092	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000415092	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000415092	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000415092	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000453510	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000453510	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000453510	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000453510	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000453510	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000453510	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550666	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550666	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550666	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550666	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550666	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550666	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000488414	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000488414	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000488414	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000488414	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000488414	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000488414	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000422628	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000422628	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000422628	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000422628	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000422628	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000422628	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400492	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400492	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400492	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400492	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400492	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400492	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400491	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400491	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400491	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400491	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400491	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400491	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400489	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400489	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400489	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400489	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400489	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400489	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000549026	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000549026	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000549026	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000549026	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000549026	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000549026	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550395	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550395	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550395	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550395	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550395	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550395	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000490712	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000490712	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000490712	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000490712	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000490712	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000490712	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400488	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400488	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400488	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400488	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400488	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400488	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400486	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400486	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400486	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400486	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000400486	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000400486	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552434	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552434	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552434	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552434	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552434	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552434	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000430933	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000430933	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000430933	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000430933	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000430933	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000430933	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000429699	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000429699	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000429699	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000429699	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000429699	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000429699	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000421229	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000421229	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000421229	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000421229	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000421229	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000421229	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550384	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550384	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550384	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550384	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000550384	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000550384	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552068	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552068	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552068	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552068	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000552068	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000552068	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000487780	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000487780	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000487780	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000487780	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000487780	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000487780	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000454774	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000454774	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000454774	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000454774	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000454774	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000454774	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000419412	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000419412	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000419412	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000419412	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000419412	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000419412	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548693	ENST00000327892		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548693	ENST00000435534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548693	ENST00000330914		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548693	ENST00000396389		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-3CDS	ENST00000548693	ENST00000396384		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000421473		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000549614		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000413547		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000419551		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000454620		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000422674		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000548023		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000435546		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000420400		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000453350		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000419792		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000547690		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000436335		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000425136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000444441		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000422650		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000547695		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000454454		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000412136		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000446385		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000383564		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000551208		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000400531		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000400534		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000400530		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000436628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000549902		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000437490		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000426754		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000425102		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000432462		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000549654		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000427480		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000424734		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
intron-intron	ENST00000548693	ENST00000420618		TCGA	LD	STAD	TCGA-VQ-A922-01A	DDR1	chr6	30850760	+	TUBB	chr6	30691150	+
In-frame	ENST00000331886	ENST00000257192		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
5CDS-intron	ENST00000331886	ENST00000462981		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
In-frame	ENST00000394147	ENST00000257192		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
5CDS-intron	ENST00000394147	ENST00000462981		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
In-frame	ENST00000551156	ENST00000257192		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
5CDS-intron	ENST00000551156	ENST00000462981		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
3UTR-3CDS	ENST00000549079	ENST00000257192		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
3UTR-intron	ENST00000549079	ENST00000462981		TCGA	LD	STAD	TCGA-VQ-A922-01A	DGKA	chr12	56334217	+	DSG1	chr18	28908152	+
In-frame	ENST00000377767	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
In-frame	ENST00000377767	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
5CDS-5UTR	ENST00000377767	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
In-frame	ENST00000377780	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
In-frame	ENST00000377780	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
5CDS-5UTR	ENST00000377780	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
Frame-shit	ENST00000545453	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
Frame-shit	ENST00000545453	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
5CDS-5UTR	ENST00000545453	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
intron-3CDS	ENST00000475871	ENST00000377669		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
intron-3CDS	ENST00000475871	ENST00000377666		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
intron-5UTR	ENST00000475871	ENST00000472022		TCGA	LD	STAD	TCGA-VQ-A922-01A	DIS3	chr13	73345933	-	KLF12	chr13	74420510	-
In-frame	ENST00000257192	ENST00000375244		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000451343		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000375247		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000479795		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000433037		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000549232		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000383159		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000489006		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000469250		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000440248		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000550212		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000548649		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000424718		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000475986		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000550539		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000471059		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000551808		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000548628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000549652		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000553092		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000552665		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000465958		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000546684		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000464376		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000552149		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
5CDS-intron	ENST00000257192	ENST00000551201		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-3CDS	ENST00000462981	ENST00000375244		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000451343		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000375247		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000479795		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000433037		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000549232		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000383159		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000489006		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000469250		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000440248		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000550212		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000548649		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000424718		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000475986		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000550539		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000471059		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000551808		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000548628		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000549652		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000553092		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000552665		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000465958		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000546684		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000464376		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000552149		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
intron-intron	ENST00000462981	ENST00000551201		TCGA	LD	STAD	TCGA-VQ-A922-01A	DSG1	chr18	28919988	+	TNXB	chr6	32038191	-
In-frame	ENST00000287647	ENST00000268130		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000287647	ENST00000560294		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000287647	ENST00000558000		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000287647	ENST00000444934		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000383807	ENST00000268130		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000383807	ENST00000560294		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000383807	ENST00000558000		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000383807	ENST00000444934		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000383806	ENST00000268130		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000383806	ENST00000560294		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000383806	ENST00000558000		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000383806	ENST00000444934		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000419585	ENST00000268130		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
In-frame	ENST00000419585	ENST00000560294		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000419585	ENST00000558000		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
5CDS-intron	ENST00000419585	ENST00000444934		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-3CDS	ENST00000431693	ENST00000268130		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-3CDS	ENST00000431693	ENST00000560294		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-intron	ENST00000431693	ENST00000558000		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-intron	ENST00000431693	ENST00000444934		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-3CDS	ENST00000438741	ENST00000268130		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-3CDS	ENST00000438741	ENST00000560294		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-intron	ENST00000438741	ENST00000558000		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
intron-intron	ENST00000438741	ENST00000444934		TCGA	LD	STAD	TCGA-VQ-A922-01A	FANCD2	chr3	10107663	+	WDR93	chr15	90260142	+
Frame-shit	ENST00000354171	ENST00000355530		TCGA	LD	STAD	TCGA-VQ-A922-01A	GPX4	chr19	1105808	+	SPNS3	chr17	4381867	+
Frame-shit	ENST00000354171	ENST00000333476		TCGA	LD	STAD	TCGA-VQ-A922-01A	GPX4	chr19	1105808	+	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000354171	ENST00000576069		TCGA	LD	STAD	TCGA-VQ-A922-01A	GPX4	chr19	1105808	+	SPNS3	chr17	4381867	+
Frame-shit	ENST00000589115	ENST00000355530		TCGA	LD	STAD	TCGA-VQ-A922-01A	GPX4	chr19	1105808	+	SPNS3	chr17	4381867	+
Frame-shit	ENST00000589115	ENST00000333476		TCGA	LD	STAD	TCGA-VQ-A922-01A	GPX4	chr19	1105808	+	SPNS3	chr17	4381867	+
5CDS-intron	ENST00000589115	ENST00000576069		TCGA	LD	STAD	TCGA-VQ-A922-01A	GPX4	chr19	1105808	+	SPNS3	chr17	4381867	+
5CDS-5UTR	ENST00000478691	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000478691	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000374616	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000374616	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
intron-5UTR	ENST00000476660	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
intron-5UTR	ENST00000476660	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000374612	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000374612	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000302271	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000302271	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
intron-5UTR	ENST00000427764	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
intron-5UTR	ENST00000427764	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
intron-5UTR	ENST00000606561	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
intron-5UTR	ENST00000606561	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000426846	ENST00000536471		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
5CDS-5UTR	ENST00000426846	ENST00000374472		TCGA	LD	STAD	TCGA-VQ-A922-01A	HNRNPR	chr1	23660011	-	CNR2	chr1	24202152	-
Frame-shit	ENST00000355280	ENST00000329078		TCGA	LD	STAD	TCGA-VQ-A922-01A	MINK1	chr17	4736935	+	SPNS2	chr17	4416542	+
Frame-shit	ENST00000347992	ENST00000329078		TCGA	LD	STAD	TCGA-VQ-A922-01A	MINK1	chr17	4736935	+	SPNS2	chr17	4416542	+
Frame-shit	ENST00000453408	ENST00000329078		TCGA	LD	STAD	TCGA-VQ-A922-01A	MINK1	chr17	4736935	+	SPNS2	chr17	4416542	+
Frame-shit	ENST00000302349	ENST00000283228		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
Frame-shit	ENST00000302349	ENST00000440835		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000302349	ENST00000537619		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000302349	ENST00000378778		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000302349	ENST00000342084		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000302349	ENST00000549308		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
In-frame	ENST00000541076	ENST00000283228		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
In-frame	ENST00000541076	ENST00000440835		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000541076	ENST00000537619		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000541076	ENST00000378778		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000541076	ENST00000342084		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000541076	ENST00000549308		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
Frame-shit	ENST00000606320	ENST00000283228		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
Frame-shit	ENST00000606320	ENST00000440835		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000606320	ENST00000537619		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000606320	ENST00000378778		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000606320	ENST00000342084		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000606320	ENST00000549308		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
Frame-shit	ENST00000392425	ENST00000283228		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
Frame-shit	ENST00000392425	ENST00000440835		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000392425	ENST00000537619		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000392425	ENST00000378778		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000392425	ENST00000342084		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
5CDS-intron	ENST00000392425	ENST00000549308		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000539639	ENST00000283228		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
intron-3CDS	ENST00000539639	ENST00000440835		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
intron-intron	ENST00000539639	ENST00000537619		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
intron-intron	ENST00000539639	ENST00000378778		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
intron-intron	ENST00000539639	ENST00000342084		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
intron-intron	ENST00000539639	ENST00000549308		TCGA	LD	STAD	TCGA-VQ-A922-01A	MPHOSPH9	chr12	123705919	-	PTPRR	chr12	71095103	-
Frame-shit	ENST00000518852	ENST00000434536		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000518852	ENST00000252512		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000518852	ENST00000518017		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000518852	ENST00000433566		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000240139	ENST00000434536		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000240139	ENST00000252512		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000240139	ENST00000518017		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000240139	ENST00000433566		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000289963	ENST00000434536		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000289963	ENST00000252512		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000289963	ENST00000518017		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000289963	ENST00000433566		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000397775	ENST00000434536		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
Frame-shit	ENST00000397775	ENST00000252512		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000397775	ENST00000518017		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
5CDS-intron	ENST00000397775	ENST00000433566		TCGA	LD	STAD	TCGA-VQ-A922-01A	PPP3CC	chr8	22298971	+	XPO7	chr8	21851874	+
intron-3CDS	ENST00000400921	ENST00000378785		TCGA	LD	STAD	TCGA-VQ-A922-01A	PRKCZ	chr1	1991030	+	ATAD3C	chr1	1403764	+
intron-3CDS	ENST00000400920	ENST00000378785		TCGA	LD	STAD	TCGA-VQ-A922-01A	PRKCZ	chr1	1991030	+	ATAD3C	chr1	1403764	+
intron-3CDS	ENST00000479263	ENST00000378785		TCGA	LD	STAD	TCGA-VQ-A922-01A	PRKCZ	chr1	1991030	+	ATAD3C	chr1	1403764	+
In-frame	ENST00000357277	ENST00000380122		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
In-frame	ENST00000357277	ENST00000398155		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
5CDS-intron	ENST00000357277	ENST00000485153		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
In-frame	ENST00000303843	ENST00000380122		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
In-frame	ENST00000303843	ENST00000398155		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
5CDS-intron	ENST00000303843	ENST00000485153		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
In-frame	ENST00000380064	ENST00000380122		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
In-frame	ENST00000380064	ENST00000398155		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
5CDS-intron	ENST00000380064	ENST00000485153		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
3UTR-3CDS	ENST00000469714	ENST00000380122		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
3UTR-3CDS	ENST00000469714	ENST00000398155		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
3UTR-intron	ENST00000469714	ENST00000485153		TCGA	LD	STAD	TCGA-VQ-A922-01A	REPS2	chrX	17121902	+	TXLNG	chrX	16847699	+
5UTR-5UTR	ENST00000341084	ENST00000520268		TCGA	LD	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101322095	-	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000519449	ENST00000520268		TCGA	LD	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101322095	-	KB-1562D12.1	chr8	102473845	-
intron-5UTR	ENST00000523255	ENST00000520268		TCGA	LD	STAD	TCGA-VQ-A922-01A	RNF19A	chr8	101322095	-	KB-1562D12.1	chr8	102473845	-
5UTR-3CDS	ENST00000470422	ENST00000377899		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5UTR-3CDS	ENST00000470422	ENST00000262545		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5UTR-3CDS	ENST00000470422	ENST00000536609		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5UTR-3UTR	ENST00000470422	ENST00000459871		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
In-frame	ENST00000246043	ENST00000377899		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
In-frame	ENST00000246043	ENST00000262545		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
In-frame	ENST00000246043	ENST00000536609		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5CDS-3UTR	ENST00000246043	ENST00000459871		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000377813	ENST00000377899		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000377813	ENST00000262545		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000377813	ENST00000536609		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5CDS-3UTR	ENST00000377813	ENST00000459871		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000377807	ENST00000377899		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000377807	ENST00000262545		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000377807	ENST00000536609		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5CDS-3UTR	ENST00000377807	ENST00000459871		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000360807	ENST00000377899		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000360807	ENST00000262545		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
Frame-shit	ENST00000360807	ENST00000536609		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5CDS-3UTR	ENST00000360807	ENST00000459871		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
In-frame	ENST00000455029	ENST00000377899		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
In-frame	ENST00000455029	ENST00000262545		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
In-frame	ENST00000455029	ENST00000536609		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5CDS-3UTR	ENST00000455029	ENST00000459871		TCGA	LD	STAD	TCGA-VQ-A922-01A	RRBP1	chr20	17596078	-	PCSK2	chr20	17462227	+
5UTR-3CDS	ENST00000316423	ENST00000303538		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
5UTR-3CDS	ENST00000316423	ENST00000503396		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
5UTR-3CDS	ENST00000501493	ENST00000303538		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
5UTR-3CDS	ENST00000501493	ENST00000503396		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
intron-3CDS	ENST00000506179	ENST00000303538		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
intron-3CDS	ENST00000506179	ENST00000503396		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
5UTR-3CDS	ENST00000507089	ENST00000303538		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
5UTR-3CDS	ENST00000507089	ENST00000503396		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
intron-3CDS	ENST00000515398	ENST00000303538		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
intron-3CDS	ENST00000515398	ENST00000503396		TCGA	LD	STAD	TCGA-VQ-A922-01A	UGDH	chr4	39528903	-	PDS5A	chr4	39910160	-
Frame-shit	ENST00000608083	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000608083	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000608083	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377855	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377855	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377855	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000545482	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000545482	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000545482	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000361521	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000361521	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000361521	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377842	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377842	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377842	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
Frame-shit	ENST00000377845	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-5UTR	ENST00000377845	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5CDS-intron	ENST00000377845	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-3CDS	ENST00000541130	ENST00000377748		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000377732		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000400915		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000377740		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000377737		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000537245		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-5UTR	ENST00000541130	ENST00000544978		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000400913		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000340850		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000377725		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000377728		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
intron-intron	ENST00000541130	ENST00000535355		TCGA	LD	STAD	TCGA-VQ-A925-01A	ACOT7	chr1	6341162	-	PLEKHG5	chr1	6556629	-
5UTR-3CDS	ENST00000202028	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000202028	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3UTR	ENST00000202028	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000373950	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000373950	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3UTR	ENST00000373950	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000441639	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000441639	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3UTR	ENST00000441639	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373946	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373946	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000373946	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000338074	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000338074	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000338074	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373941	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373941	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000373941	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000479336	ENST00000374012		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000479336	ENST00000439301		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000479336	ENST00000481202		TCGA	LD	STAD	TCGA-VQ-A925-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
Frame-shit	ENST00000327367	ENST00000178640		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
5CDS-3UTR	ENST00000327367	ENST00000560591		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
5CDS-3UTR	ENST00000327367	ENST00000395476		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
5CDS-3UTR	ENST00000327367	ENST00000354498		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
5CDS-intron	ENST00000327367	ENST00000340972		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3CDS	ENST00000559092	ENST00000178640		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000559092	ENST00000560591		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000559092	ENST00000395476		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000559092	ENST00000354498		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-intron	ENST00000559092	ENST00000340972		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3CDS	ENST00000540846	ENST00000178640		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000540846	ENST00000560591		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000540846	ENST00000395476		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000540846	ENST00000354498		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-intron	ENST00000540846	ENST00000340972		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3CDS	ENST00000439724	ENST00000178640		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000439724	ENST00000560591		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000439724	ENST00000395476		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000439724	ENST00000354498		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-intron	ENST00000439724	ENST00000340972		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3CDS	ENST00000537194	ENST00000178640		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000537194	ENST00000560591		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000537194	ENST00000395476		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3UTR	ENST00000537194	ENST00000354498		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-intron	ENST00000537194	ENST00000340972		TCGA	LD	STAD	TCGA-VQ-A925-01A	SMAD3	chr15	67358698	+	MAP2K5	chr15	67879184	+
intron-3CDS	ENST00000263377	ENST00000263388		TCGA	LD	STAD	TCGA-VQ-A928-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
intron-3CDS	ENST00000371835	ENST00000263388		TCGA	LD	STAD	TCGA-VQ-A928-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
5UTR-3CDS	ENST00000360016	ENST00000263388		TCGA	LD	STAD	TCGA-VQ-A928-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
intron-3CDS	ENST00000602230	ENST00000263388		TCGA	LD	STAD	TCGA-VQ-A928-01A	BRD4	chr19	15443101	-	NOTCH3	chr19	15281636	-
5UTR-intron	ENST00000209875	ENST00000508394		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000506595		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000514685		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000505128		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000337581		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000513838		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000243112		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000505662		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000401977		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5UTR-intron	ENST00000209875	ENST00000514196		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000508394		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000506595		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000514685		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000505128		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000337581		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000513838		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000243112		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000505662		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000401977		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000439541	ENST00000514196		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000508394		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000506595		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000514685		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000505128		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000337581		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000513838		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000243112		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000505662		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000401977		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
intron-intron	ENST00000550411	ENST00000514196		TCGA	LD	STAD	TCGA-VQ-A928-01A	CBX5	chr12	54673792	-	SMUG1	chr12	54565893	-
5CDS-5UTR	ENST00000253083	ENST00000253233		TCGA	LD	STAD	TCGA-VQ-A928-01A	HIP1R	chr12	123344377	+	C12orf65	chr12	123738194	+
5CDS-5UTR	ENST00000253083	ENST00000366329		TCGA	LD	STAD	TCGA-VQ-A928-01A	HIP1R	chr12	123344377	+	C12orf65	chr12	123738194	+
5CDS-5UTR	ENST00000253083	ENST00000429587		TCGA	LD	STAD	TCGA-VQ-A928-01A	HIP1R	chr12	123344377	+	C12orf65	chr12	123738194	+
intron-5UTR	ENST00000537322	ENST00000253233		TCGA	LD	STAD	TCGA-VQ-A928-01A	HIP1R	chr12	123344377	+	C12orf65	chr12	123738194	+
intron-5UTR	ENST00000537322	ENST00000366329		TCGA	LD	STAD	TCGA-VQ-A928-01A	HIP1R	chr12	123344377	+	C12orf65	chr12	123738194	+
intron-5UTR	ENST00000537322	ENST00000429587		TCGA	LD	STAD	TCGA-VQ-A928-01A	HIP1R	chr12	123344377	+	C12orf65	chr12	123738194	+
In-frame	ENST00000356770	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
Frame-shit	ENST00000394830	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000296302	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000337303	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000410007	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000409057	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000409114	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000409767	ENST00000296490		TCGA	LD	STAD	TCGA-VQ-A928-01A	PBRM1	chr3	52712516	-	WDR82	chr3	52304825	-
In-frame	ENST00000262241	ENST00000299155		TCGA	LD	STAD	TCGA-VQ-A928-01A	RCOR1	chr14	103059662	+	AMN	chr14	103390048	+
In-frame	ENST00000570597	ENST00000299155		TCGA	LD	STAD	TCGA-VQ-A928-01A	RCOR1	chr14	103059662	+	AMN	chr14	103390048	+
Frame-shit	ENST00000341307	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000356000	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
3UTR-3CDS	ENST00000538995	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000377819	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000339997	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000540798	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000537981	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
Frame-shit	ENST00000354497	ENST00000314133		TCGA	LD	STAD	TCGA-VQ-A928-01A	RTN3	chr11	63449250	+	COX8A	chr11	63743697	+
5UTR-intron	ENST00000253934	ENST00000569256		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5UTR-intron	ENST00000253934	ENST00000248098		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5UTR-intron	ENST00000253934	ENST00000562684		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5UTR-intron	ENST00000253934	ENST00000561516		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5UTR-5UTR	ENST00000253934	ENST00000382711		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5UTR-5UTR	ENST00000253934	ENST00000569765		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5UTR-5UTR	ENST00000253934	ENST00000382710		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-intron	ENST00000566264	ENST00000569256		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-intron	ENST00000566264	ENST00000248098		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-intron	ENST00000566264	ENST00000562684		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-intron	ENST00000566264	ENST00000561516		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000566264	ENST00000382711		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000566264	ENST00000569765		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
intron-5UTR	ENST00000566264	ENST00000382710		TCGA	LD	STAD	TCGA-VQ-A928-01A	TMEM204	chr16	1578797	+	HN1L	chr16	1735440	+
5CDS-5UTR	ENST00000343638	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000343638	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000302904	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000302904	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000527034	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000527034	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000533177	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000533177	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000436088	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000436088	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000393606	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000393606	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000529383	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000529383	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000526094	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-intron	ENST00000526094	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5UTR-5UTR	ENST00000537550	ENST00000360085		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5UTR-intron	ENST00000537550	ENST00000592796		TCGA	LD	STAD	TCGA-VQ-A928-01A	UBTF	chr17	42295540	-	PYY	chr17	42043900	-
5CDS-5UTR	ENST00000354216	ENST00000245663		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000354216	ENST00000395104		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000354216	ENST00000302995		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000354216	ENST00000480766		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000369892	ENST00000245663		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000369892	ENST00000395104		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000369892	ENST00000302995		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000369892	ENST00000480766		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000358711	ENST00000245663		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000358711	ENST00000395104		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000358711	ENST00000302995		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000358711	ENST00000480766		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000369908	ENST00000245663		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000369908	ENST00000395104		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000369908	ENST00000302995		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000369908	ENST00000480766		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000492660	ENST00000245663		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000492660	ENST00000395104		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
intron-5UTR	ENST00000492660	ENST00000302995		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
intron-intron	ENST00000492660	ENST00000480766		TCGA	LD	STAD	TCGA-VQ-A928-01A	UCKL1	chr20	62572303	-	ZBTB46	chr20	62422143	-
In-frame	ENST00000392325	ENST00000571995		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-intron	ENST00000392325	ENST00000571880		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392325	ENST00000269347		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
5CDS-5UTR	ENST00000392325	ENST00000538809		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-3CDS	ENST00000571835	ENST00000571995		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-intron	ENST00000571835	ENST00000571880		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000571835	ENST00000269347		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
intron-5UTR	ENST00000571835	ENST00000538809		TCGA	LD	STAD	TCGA-VQ-A928-01A	WDR45B	chr17	80601825	-	RAB40B	chr17	80622432	-
In-frame	ENST00000434074	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000434074	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000434074	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000434074	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000434074	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000434074	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000434074	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000312040	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000312040	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000312040	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000312040	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000312040	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000312040	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000312040	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000451945	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000451945	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000451945	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000451945	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000451945	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000451945	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000451945	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000529655	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000529655	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000529655	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000529655	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000529655	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000529655	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000529655	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000530500	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000530500	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000530500	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000530500	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000530500	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000530500	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000530500	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000526508	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000526508	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000526508	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000526508	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000526508	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000526508	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000526508	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000524625	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000524625	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000524625	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000524625	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000524625	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000524625	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000524625	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000359513	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000359513	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000359513	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000359513	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000359513	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000359513	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000359513	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000528494	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000528494	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000528494	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000528494	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000528494	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000528494	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
5CDS-3UTR	ENST00000528494	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3CDS	ENST00000526485	ENST00000378618		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3CDS	ENST00000526485	ENST00000536126		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3CDS	ENST00000526485	ENST00000278460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3CDS	ENST00000526485	ENST00000395460		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3CDS	ENST00000526485	ENST00000378615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3CDS	ENST00000526485	ENST00000543718		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
intron-3UTR	ENST00000526485	ENST00000527268		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ATG13	chr11	46671867	+	C11orf49	chr11	47176727	+
In-frame	ENST00000589222	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000589222	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000589222	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000407086	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000407086	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000390652	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000390652	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000408905	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000408905	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588462	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000588462	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000585744	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000585744	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
In-frame	ENST00000588874	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000588874	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000262291		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000537567		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000539763		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000536180		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000545362		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-intron	ENST00000585812	ENST00000588617		TCGA	LD	STAD	TCGA-VQ-A92D-01A	BCAS3	chr17	58988063	+	VMP1	chr17	57895073	+
intron-intron	ENST00000461377	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000461377	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000258781	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000544363	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
5CDS-intron	ENST00000541586	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000475551	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000381112	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000439616		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000443864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000447398		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000449767		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000444676		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000222673		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000543843		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
intron-intron	ENST00000474617	ENST00000459672		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CCM2	chr7	45039962	+	OGDH	chr7	44684926	+
In-frame	ENST00000264012	ENST00000336278		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
5CDS-intron	ENST00000264012	ENST00000528525		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
In-frame	ENST00000429102	ENST00000336278		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
5CDS-intron	ENST00000429102	ENST00000528525		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
In-frame	ENST00000581171	ENST00000336278		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
5CDS-intron	ENST00000581171	ENST00000528525		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
intron-3CDS	ENST00000569117	ENST00000336278		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
intron-intron	ENST00000569117	ENST00000528525		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CDH3	chr16	68721639	+	SNTB2	chr16	69333493	+
intron-3CDS	ENST00000539406	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000539406	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000539406	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000539406	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000539406	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000539406	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000222792	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000222792	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000222792	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000222792	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000222792	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
5CDS-intron	ENST00000222792	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000435288	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000435288	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000435288	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000435288	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000435288	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
5CDS-intron	ENST00000435288	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000495789	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000495789	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000495789	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000495789	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000495789	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
5CDS-intron	ENST00000495789	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000539389	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000539389	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000539389	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000539389	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
Frame-shit	ENST00000539389	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
5CDS-intron	ENST00000539389	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000546235	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000546235	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000546235	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000546235	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000546235	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000546235	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000409041	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000409041	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000409041	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000409041	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000409041	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000409041	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000424025	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000424025	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000424025	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000424025	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000424025	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000424025	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000439711	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000439711	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000439711	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000439711	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000439711	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000439711	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000421775	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000421775	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000421775	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000421775	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000421775	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000421775	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000410098	ENST00000543117		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000410098	ENST00000265393		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000410098	ENST00000409980		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000410098	ENST00000433216		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-3CDS	ENST00000410098	ENST00000396319		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
intron-intron	ENST00000410098	ENST00000494033		TCGA	LD	STAD	TCGA-VQ-A92D-01A	CHN2	chr7	29234606	+	TAX1BP1	chr7	27824782	+
5UTR-3CDS	ENST00000263026	ENST00000330898		TCGA	LD	STAD	TCGA-VQ-A92D-01A	EEF2K	chr16	22218000	+	SDR42E2	chr16	22192840	+
intron-3CDS	ENST00000561791	ENST00000330898		TCGA	LD	STAD	TCGA-VQ-A92D-01A	EEF2K	chr16	22218000	+	SDR42E2	chr16	22192840	+
5CDS-intron	ENST00000334528	ENST00000560775		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000334528	ENST00000434130		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000334528	ENST00000560780		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000334528	ENST00000558573		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-intron	ENST00000561249	ENST00000560775		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000561249	ENST00000434130		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000561249	ENST00000560780		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000561249	ENST00000558573		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-intron	ENST00000559047	ENST00000560775		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000559047	ENST00000434130		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000559047	ENST00000560780		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
5CDS-5UTR	ENST00000559047	ENST00000558573		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-intron	ENST00000558197	ENST00000560775		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000558197	ENST00000434130		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000558197	ENST00000560780		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000558197	ENST00000558573		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-intron	ENST00000559150	ENST00000560775		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000559150	ENST00000434130		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000559150	ENST00000560780		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000559150	ENST00000558573		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-intron	ENST00000320930	ENST00000560775		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000320930	ENST00000434130		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000320930	ENST00000560780		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-5UTR	ENST00000320930	ENST00000558573		TCGA	LD	STAD	TCGA-VQ-A92D-01A	FMN1	chr15	33357158	-	PATL2	chr15	44968763	-
intron-3CDS	ENST00000252577	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000252577	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000360315	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000360315	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000537887	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000537887	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
5UTR-3CDS	ENST00000404158	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
5UTR-3CDS	ENST00000404158	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000358713	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000358713	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000429563	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000429563	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000473184	ENST00000252575		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
intron-3CDS	ENST00000473184	ENST00000538881		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GATAD2A	chr19	19547028	+	NCAN	chr19	19359509	+
In-frame	ENST00000360317	ENST00000269534		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000360317	ENST00000521789		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000360317	ENST00000435506		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
In-frame	ENST00000394175	ENST00000269534		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000394175	ENST00000521789		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000394175	ENST00000435506		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
In-frame	ENST00000309481	ENST00000269534		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000309481	ENST00000521789		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000309481	ENST00000435506		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
In-frame	ENST00000520542	ENST00000269534		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000520542	ENST00000521789		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000520542	ENST00000435506		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
In-frame	ENST00000418519	ENST00000269534		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000418519	ENST00000521789		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000418519	ENST00000435506		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
In-frame	ENST00000394179	ENST00000269534		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000394179	ENST00000521789		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5CDS-intron	ENST00000394179	ENST00000435506		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GSDMB	chr17	38066009	-	NT5C3B	chr17	39983878	-
5UTR-3UTR	ENST00000324896	ENST00000464615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000324896	ENST00000265758		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000324896	ENST00000423166		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000324896	ENST00000423497		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000353920	ENST00000464615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000353920	ENST00000265758		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000353920	ENST00000423166		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000353920	ENST00000423497		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000346152	ENST00000464615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000346152	ENST00000265758		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000346152	ENST00000423166		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000346152	ENST00000423497		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000416070	ENST00000464615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000416070	ENST00000265758		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000416070	ENST00000423166		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000416070	ENST00000423497		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000443166	ENST00000464615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000443166	ENST00000265758		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000443166	ENST00000423166		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
5UTR-3UTR	ENST00000443166	ENST00000423497		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
intron-3UTR	ENST00000438130	ENST00000464615		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
intron-3UTR	ENST00000438130	ENST00000265758		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
intron-3UTR	ENST00000438130	ENST00000423166		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
intron-3UTR	ENST00000438130	ENST00000423497		TCGA	LD	STAD	TCGA-VQ-A92D-01A	GTF2I	chr7	74072394	+	WBSCR22	chr7	73100966	+
In-frame	ENST00000268182	ENST00000352732		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
In-frame	ENST00000268182	ENST00000565973		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
In-frame	ENST00000268182	ENST00000355100		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
5CDS-intron	ENST00000268182	ENST00000562254		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
In-frame	ENST00000560738	ENST00000352732		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
In-frame	ENST00000560738	ENST00000565973		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
In-frame	ENST00000560738	ENST00000355100		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
5CDS-intron	ENST00000560738	ENST00000562254		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000560020	ENST00000352732		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000560020	ENST00000565973		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
intron-3CDS	ENST00000560020	ENST00000355100		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
intron-intron	ENST00000560020	ENST00000562254		TCGA	LD	STAD	TCGA-VQ-A92D-01A	IQGAP1	chr15	91017365	+	ABHD2	chr15	89719043	+
In-frame	ENST00000579662	ENST00000167462		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000579662	ENST00000375227		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000579662	ENST00000392550		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000579662	ENST00000578363		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000579662	ENST00000577200		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000339591	ENST00000167462		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000339591	ENST00000375227		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000339591	ENST00000392550		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000339591	ENST00000578363		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000339591	ENST00000577200		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000200181	ENST00000167462		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000200181	ENST00000375227		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000200181	ENST00000392550		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000200181	ENST00000578363		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000200181	ENST00000577200		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000450894	ENST00000167462		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000450894	ENST00000375227		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000450894	ENST00000392550		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000450894	ENST00000578363		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000450894	ENST00000577200		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000449880	ENST00000167462		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000449880	ENST00000375227		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000449880	ENST00000392550		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000449880	ENST00000578363		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000449880	ENST00000577200		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000584558	ENST00000167462		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000584558	ENST00000375227		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000584558	ENST00000392550		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000584558	ENST00000578363		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
3UTR-3CDS	ENST00000584558	ENST00000577200		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITGB4	chr17	73723586	+	LLGL2	chr17	73552127	+
In-frame	ENST00000399353	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399353	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399353	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399353	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399353	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000381318	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000381318	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381318	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381318	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381318	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000381291	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000381291	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381291	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381291	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381291	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000381285	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000381285	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381285	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381285	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000381285	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399367	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399367	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399367	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399367	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399367	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399352	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399352	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399352	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399352	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399352	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399355	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399355	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399355	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399355	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399355	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399349	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399349	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399349	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399349	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399349	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-3CDS	ENST00000399338	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-3CDS	ENST00000399338	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-intron	ENST00000399338	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-intron	ENST00000399338	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-intron	ENST00000399338	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
3UTR-3CDS	ENST00000379960	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
3UTR-3CDS	ENST00000379960	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
3UTR-intron	ENST00000379960	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
3UTR-intron	ENST00000379960	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
3UTR-intron	ENST00000379960	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000437442	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000437442	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000437442	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000437442	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000437442	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399326	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
In-frame	ENST00000399326	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399326	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399326	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-intron	ENST00000399326	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-3CDS	ENST00000488166	ENST00000399786		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-3CDS	ENST00000488166	ENST00000339944		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-intron	ENST00000488166	ENST00000497833		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-intron	ENST00000488166	ENST00000399784		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
intron-intron	ENST00000488166	ENST00000303645		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN1	chr21	35191627	+	MRAP	chr21	33686862	+
5CDS-5UTR	ENST00000361999	ENST00000496972		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000405222		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000407661		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000406818		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000407038		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000404103		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000407186		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000288642		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000545439		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000361999	ENST00000472690		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000496972		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000405222		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000407661		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000406818		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000407038		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000404103		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000407186		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000288642		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000545439		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000355123	ENST00000472690		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000496972		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000405222		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000407661		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000406818		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000407038		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000404103		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000407186		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000288642		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000545439		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
5CDS-5UTR	ENST00000406921	ENST00000472690		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000496972		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000405222		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000407661		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000406818		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000407038		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000404103		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000407186		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000288642		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000545439		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
intron-5UTR	ENST00000407704	ENST00000472690		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ITSN2	chr2	24526668	-	DTNB	chr2	25861963	-
In-frame	ENST00000535741	ENST00000281708		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
In-frame	ENST00000535741	ENST00000603548		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000535741	ENST00000604872		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000535741	ENST00000296555		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000535741	ENST00000263981		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000535741	ENST00000393956		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000535741	ENST00000603841		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000535741	ENST00000604095		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
Frame-shit	ENST00000510413	ENST00000281708		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
Frame-shit	ENST00000510413	ENST00000603548		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000510413	ENST00000604872		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000510413	ENST00000296555		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000510413	ENST00000263981		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000510413	ENST00000393956		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000510413	ENST00000603841		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000510413	ENST00000604095		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-3CDS	ENST00000503716	ENST00000281708		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-3CDS	ENST00000503716	ENST00000603548		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-intron	ENST00000503716	ENST00000604872		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-intron	ENST00000503716	ENST00000296555		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-intron	ENST00000503716	ENST00000263981		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-intron	ENST00000503716	ENST00000393956		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-intron	ENST00000503716	ENST00000603841		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
intron-intron	ENST00000503716	ENST00000604095		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
In-frame	ENST00000357115	ENST00000281708		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
In-frame	ENST00000357115	ENST00000603548		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000357115	ENST00000604872		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000357115	ENST00000296555		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000357115	ENST00000263981		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000357115	ENST00000393956		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000357115	ENST00000603841		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000357115	ENST00000604095		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
Frame-shit	ENST00000507224	ENST00000281708		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
Frame-shit	ENST00000507224	ENST00000603548		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000507224	ENST00000604872		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000507224	ENST00000296555		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000507224	ENST00000263981		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000507224	ENST00000393956		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000507224	ENST00000603841		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
5CDS-intron	ENST00000507224	ENST00000604095		TCGA	LD	STAD	TCGA-VQ-A92D-01A	LRBA	chr4	151729472	-	FBXW7	chr4	153271276	-
Frame-shit	ENST00000402746	ENST00000396946		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MAD1L1	chr7	2054137	-	CARD11	chr7	2957019	-
Frame-shit	ENST00000399654	ENST00000396946		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MAD1L1	chr7	2054137	-	CARD11	chr7	2957019	-
Frame-shit	ENST00000406869	ENST00000396946		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MAD1L1	chr7	2054137	-	CARD11	chr7	2957019	-
Frame-shit	ENST00000265854	ENST00000396946		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MAD1L1	chr7	2054137	-	CARD11	chr7	2957019	-
intron-3CDS	ENST00000486340	ENST00000396946		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MAD1L1	chr7	2054137	-	CARD11	chr7	2957019	-
In-frame	ENST00000589977	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000589977	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000589977	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000591571	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000591571	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000591571	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000586738	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000586738	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000586738	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000588783	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000588783	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000588783	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000586752	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000586752	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000586752	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000588302	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
In-frame	ENST00000588302	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000588302	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000590964	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000590964	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000590964	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000341249	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000341249	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000341249	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000588822	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000588822	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000588822	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000586200	ENST00000584667		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
Frame-shit	ENST00000586200	ENST00000355423		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5CDS-3UTR	ENST00000586200	ENST00000579864		TCGA	LD	STAD	TCGA-VQ-A92D-01A	METTL23	chr17	74729457	+	SAP30BP	chr17	73689518	+
5UTR-3CDS	ENST00000402881	ENST00000216160		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-3CDS	ENST00000402881	ENST00000331454		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-intron	ENST00000402881	ENST00000488859		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
Frame-shit	ENST00000478342	ENST00000216160		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
Frame-shit	ENST00000478342	ENST00000331454		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5CDS-intron	ENST00000478342	ENST00000488859		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-3CDS	ENST00000325301	ENST00000216160		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-3CDS	ENST00000325301	ENST00000331454		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-intron	ENST00000325301	ENST00000488859		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-3CDS	ENST00000404569	ENST00000216160		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-3CDS	ENST00000404569	ENST00000331454		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
5UTR-intron	ENST00000404569	ENST00000488859		TCGA	LD	STAD	TCGA-VQ-A92D-01A	MIEF1	chr22	39900539	+	TAB1	chr22	39822708	+
intron-intron	ENST00000345843	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000345843	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000342295	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000342295	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000361572	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000361572	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
5CDS-intron	ENST00000348160	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
5CDS-intron	ENST00000348160	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
5UTR-intron	ENST00000355476	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
5UTR-intron	ENST00000355476	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
3UTR-intron	ENST00000511401	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
3UTR-intron	ENST00000511401	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000507561	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000507561	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000504907	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000504907	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000342320	ENST00000505451		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
intron-intron	ENST00000342320	ENST00000302874		TCGA	LD	STAD	TCGA-VQ-A92D-01A	RBPJ	chr4	26322670	+	ZCCHC4	chr4	25363481	+
In-frame	ENST00000335508	ENST00000417098		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
In-frame	ENST00000335508	ENST00000443023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
In-frame	ENST00000335508	ENST00000260926		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
In-frame	ENST00000335508	ENST00000428695		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
In-frame	ENST00000335508	ENST00000457245		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
5CDS-intron	ENST00000335508	ENST00000484124		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000462613	ENST00000417098		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000462613	ENST00000443023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000462613	ENST00000260926		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000462613	ENST00000428695		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000462613	ENST00000457245		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-intron	ENST00000462613	ENST00000484124		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
3UTR-3CDS	ENST00000409915	ENST00000417098		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
3UTR-3CDS	ENST00000409915	ENST00000443023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
3UTR-3CDS	ENST00000409915	ENST00000260926		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
3UTR-3CDS	ENST00000409915	ENST00000428695		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
3UTR-3CDS	ENST00000409915	ENST00000457245		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
3UTR-intron	ENST00000409915	ENST00000484124		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000414963	ENST00000417098		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000414963	ENST00000443023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000414963	ENST00000260926		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000414963	ENST00000428695		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000414963	ENST00000457245		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-intron	ENST00000414963	ENST00000484124		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000487698	ENST00000417098		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000487698	ENST00000443023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000487698	ENST00000260926		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000487698	ENST00000428695		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-3CDS	ENST00000487698	ENST00000457245		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
intron-intron	ENST00000487698	ENST00000484124		TCGA	LD	STAD	TCGA-VQ-A92D-01A	SF3B1	chr2	198283233	-	SATB2	chr2	200173680	-
5UTR-3CDS	ENST00000169298	ENST00000287611		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
5UTR-3CDS	ENST00000169298	ENST00000265023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
5UTR-3CDS	ENST00000169298	ENST00000447445		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
5UTR-3CDS	ENST00000457772	ENST00000287611		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
5UTR-3CDS	ENST00000457772	ENST00000265023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
5UTR-3CDS	ENST00000457772	ENST00000447445		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
intron-3CDS	ENST00000448044	ENST00000287611		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
intron-3CDS	ENST00000448044	ENST00000265023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
intron-3CDS	ENST00000448044	ENST00000447445		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
intron-3CDS	ENST00000487031	ENST00000287611		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
intron-3CDS	ENST00000487031	ENST00000265023		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
intron-3CDS	ENST00000487031	ENST00000447445		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ST6GAL1	chr3	186681714	+	KNG1	chr3	186456888	+
Frame-shit	ENST00000399537	ENST00000350796		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
5CDS-intron	ENST00000399537	ENST00000396741		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
5CDS-intron	ENST00000399537	ENST00000488964		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
Frame-shit	ENST00000430969	ENST00000350796		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
5CDS-intron	ENST00000430969	ENST00000396741		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
5CDS-intron	ENST00000430969	ENST00000488964		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
intron-3CDS	ENST00000399434	ENST00000350796		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
intron-intron	ENST00000399434	ENST00000396741		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
intron-intron	ENST00000399434	ENST00000488964		TCGA	LD	STAD	TCGA-VQ-A92D-01A	TNRC18	chr7	5427303	-	CYTH3	chr7	6213364	-
5UTR-3CDS	ENST00000419886	ENST00000430939		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
5UTR-3CDS	ENST00000419886	ENST00000221742		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
5UTR-3CDS	ENST00000419886	ENST00000600144		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
5UTR-intron	ENST00000419886	ENST00000598504		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
5UTR-intron	ENST00000419886	ENST00000544886		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
intron-3CDS	ENST00000344980	ENST00000430939		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
intron-3CDS	ENST00000344980	ENST00000221742		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
intron-3CDS	ENST00000344980	ENST00000600144		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
intron-intron	ENST00000344980	ENST00000598504		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
intron-intron	ENST00000344980	ENST00000544886		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZNF433	chr19	12145644	-	SLC1A6	chr19	15065141	-
Frame-shit	ENST00000359653	ENST00000368842		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
5CDS-intron	ENST00000359653	ENST00000368839		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
5CDS-intron	ENST00000359653	ENST00000392757		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
5CDS-intron	ENST00000359653	ENST00000482963		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
intron-3CDS	ENST00000471421	ENST00000368842		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
intron-intron	ENST00000471421	ENST00000368839		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
intron-intron	ENST00000471421	ENST00000392757		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
intron-intron	ENST00000471421	ENST00000482963		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZRANB1	chr10	126631876	+	LHPP	chr10	126205749	+
5CDS-5UTR	ENST00000381638	ENST00000262467		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000381638	ENST00000345221		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000381638	ENST00000269280		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000381638	ENST00000572272		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000381638	ENST00000354411		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
5CDS-intron	ENST00000381638	ENST00000577119		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
5CDS-5UTR	ENST00000381638	ENST00000571307		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-5UTR	ENST00000574474	ENST00000262467		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-5UTR	ENST00000574474	ENST00000345221		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-intron	ENST00000574474	ENST00000269280		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-intron	ENST00000574474	ENST00000572272		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-intron	ENST00000574474	ENST00000354411		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-intron	ENST00000574474	ENST00000577119		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
intron-5UTR	ENST00000574474	ENST00000571307		TCGA	LD	STAD	TCGA-VQ-A92D-01A	ZZEF1	chr17	3947518	-	NLRP1	chr17	5487820	-
In-frame	ENST00000323786	ENST00000261772		TCGA	LD	STAD	TCGA-VQ-A94O-01A	COG4	chr16	70530169	-	AARS	chr16	70311057	-
5CDS-intron	ENST00000323786	ENST00000564359		TCGA	LD	STAD	TCGA-VQ-A94O-01A	COG4	chr16	70530169	-	AARS	chr16	70311057	-
intron-3CDS	ENST00000393612	ENST00000261772		TCGA	LD	STAD	TCGA-VQ-A94O-01A	COG4	chr16	70530169	-	AARS	chr16	70311057	-
intron-intron	ENST00000393612	ENST00000564359		TCGA	LD	STAD	TCGA-VQ-A94O-01A	COG4	chr16	70530169	-	AARS	chr16	70311057	-
intron-3CDS	ENST00000564653	ENST00000261772		TCGA	LD	STAD	TCGA-VQ-A94O-01A	COG4	chr16	70530169	-	AARS	chr16	70311057	-
intron-intron	ENST00000564653	ENST00000564359		TCGA	LD	STAD	TCGA-VQ-A94O-01A	COG4	chr16	70530169	-	AARS	chr16	70311057	-
5CDS-3UTR	ENST00000367282	ENST00000359651		TCGA	LD	STAD	TCGA-VQ-A94O-01A	GPR37L1	chr1	202092721	+	ELF3	chr1	201985008	+
5CDS-3UTR	ENST00000367282	ENST00000367284		TCGA	LD	STAD	TCGA-VQ-A94O-01A	GPR37L1	chr1	202092721	+	ELF3	chr1	201985008	+
5CDS-3UTR	ENST00000367282	ENST00000367283		TCGA	LD	STAD	TCGA-VQ-A94O-01A	GPR37L1	chr1	202092721	+	ELF3	chr1	201985008	+
5CDS-intron	ENST00000367282	ENST00000495848		TCGA	LD	STAD	TCGA-VQ-A94O-01A	GPR37L1	chr1	202092721	+	ELF3	chr1	201985008	+
intron-3CDS	ENST00000360605	ENST00000521861		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000360605	ENST00000276682		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
Frame-shit	ENST00000542441	ENST00000521861		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
Frame-shit	ENST00000542441	ENST00000276682		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
5UTR-3CDS	ENST00000392271	ENST00000521861		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
5UTR-3CDS	ENST00000392271	ENST00000276682		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
Frame-shit	ENST00000312051	ENST00000521861		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
Frame-shit	ENST00000312051	ENST00000276682		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000574176	ENST00000521861		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
intron-3CDS	ENST00000574176	ENST00000276682		TCGA	LD	STAD	TCGA-VQ-A94O-01A	URI1	chr19	30433571	+	EIF3H	chr8	117671219	-
In-frame	ENST00000343735	ENST00000378004		TCGA	LD	STAD	TCGA-VQ-A94P-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000343735	ENST00000274498		TCGA	LD	STAD	TCGA-VQ-A94P-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000343735	ENST00000486650		TCGA	LD	STAD	TCGA-VQ-A94P-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000378004		TCGA	LD	STAD	TCGA-VQ-A94P-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
In-frame	ENST00000183605	ENST00000274498		TCGA	LD	STAD	TCGA-VQ-A94P-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-intron	ENST00000183605	ENST00000486650		TCGA	LD	STAD	TCGA-VQ-A94P-01A	CLDN18	chr3	137749947	+	ARHGAP26	chr5	142393645	+
5CDS-5UTR	ENST00000337907	ENST00000377516		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000337907	ENST00000361696		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000337907	ENST00000054668		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-5UTR	ENST00000377464	ENST00000377516		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000377464	ENST00000361696		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000377464	ENST00000054668		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-5UTR	ENST00000400907	ENST00000377516		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000400907	ENST00000361696		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000400907	ENST00000054668		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-5UTR	ENST00000400908	ENST00000377516		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000400908	ENST00000361696		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5CDS-intron	ENST00000400908	ENST00000054668		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5UTR-5UTR	ENST00000476556	ENST00000377516		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5UTR-intron	ENST00000476556	ENST00000361696		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5UTR-intron	ENST00000476556	ENST00000054668		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5UTR-5UTR	ENST00000460659	ENST00000377516		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5UTR-intron	ENST00000460659	ENST00000361696		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
5UTR-intron	ENST00000460659	ENST00000054668		TCGA	LD	STAD	TCGA-VQ-A94R-01A	RERE	chr1	8482787	-	UTS2	chr1	7913565	-
Frame-shit	ENST00000509176	ENST00000282470		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
In-frame	ENST00000509176	ENST00000418378		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
In-frame	ENST00000509176	ENST00000503414		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
Frame-shit	ENST00000333691	ENST00000282470		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
In-frame	ENST00000333691	ENST00000418378		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
In-frame	ENST00000333691	ENST00000503414		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
Frame-shit	ENST00000432775	ENST00000282470		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
In-frame	ENST00000432775	ENST00000418378		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
In-frame	ENST00000432775	ENST00000503414		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
intron-3CDS	ENST00000504150	ENST00000282470		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
intron-3CDS	ENST00000504150	ENST00000418378		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
intron-3CDS	ENST00000504150	ENST00000503414		TCGA	LD	STAD	TCGA-VQ-AA68-01A	CCSER1	chr4	91389505	+	SPARCL1	chr4	88394955	-
intron-3CDS	ENST00000359486	ENST00000360608		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000359486	ENST00000389970		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000359486	ENST00000359033		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000335626	ENST00000360608		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000335626	ENST00000389970		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000335626	ENST00000359033		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000404876	ENST00000360608		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000404876	ENST00000389970		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
intron-3CDS	ENST00000404876	ENST00000359033		TCGA	LD	STAD	TCGA-VQ-AA69-01A	TCF20	chr22	42739485	-	CYP2D6	chr22	42524946	-
Frame-shit	ENST00000309993	ENST00000284273		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MSL2	chr3	135913814	-	UBASH3B	chr11	122669650	+
5CDS-intron	ENST00000309993	ENST00000525711		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MSL2	chr3	135913814	-	UBASH3B	chr11	122669650	+
intron-3CDS	ENST00000434835	ENST00000284273		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MSL2	chr3	135913814	-	UBASH3B	chr11	122669650	+
intron-intron	ENST00000434835	ENST00000525711		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MSL2	chr3	135913814	-	UBASH3B	chr11	122669650	+
Frame-shit	ENST00000376592	ENST00000304457		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376592	ENST00000376936		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376592	ENST00000544779		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
5CDS-intron	ENST00000376592	ENST00000485606		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376583	ENST00000304457		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376583	ENST00000376936		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376583	ENST00000544779		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
5CDS-intron	ENST00000376583	ENST00000485606		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376590	ENST00000304457		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376590	ENST00000376936		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
In-frame	ENST00000376590	ENST00000544779		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
5CDS-intron	ENST00000376590	ENST00000485606		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376585	ENST00000304457		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
Frame-shit	ENST00000376585	ENST00000376936		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
In-frame	ENST00000376585	ENST00000544779		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
5CDS-intron	ENST00000376585	ENST00000485606		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	MTHFR	chr1	11860269	-	EXOSC10	chr1	11155938	-
In-frame	ENST00000261716	ENST00000394859		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	TAOK1	chr17	27778698	+	ANKRD13B	chr17	27934760	+
In-frame	ENST00000536202	ENST00000394859		TCGA	LD	STAD	TCGA-VQ-AA6A-01A	TAOK1	chr17	27778698	+	ANKRD13B	chr17	27934760	+
intron-5UTR	ENST00000379441	ENST00000454682		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000550952		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000356769		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000552540		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000393891		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000548563		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000546392		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000379441	ENST00000551793		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000454682		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000550952		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000356769		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000552540		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000393891		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000548563		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000546392		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000179765	ENST00000551793		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000454682		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000550952		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000356769		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000552540		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000393891		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000548563		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000546392		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000551812	ENST00000551793		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000454682		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000550952		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000356769		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000552540		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000393891		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000548563		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000546392		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000549884	ENST00000551793		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000454682		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000550952		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000356769		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000552540		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000393891		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000548563		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000546392		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
intron-5UTR	ENST00000553222	ENST00000551793		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	BAZ2A	chr12	57024560	-	NACA	chr12	57118307	-
Frame-shit	ENST00000267101	ENST00000262032		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000267101	ENST00000548601		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000267101	ENST00000431367		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000267101	ENST00000547167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000267101	ENST00000547791		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
Frame-shit	ENST00000450146	ENST00000262032		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000450146	ENST00000548601		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000450146	ENST00000431367		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000450146	ENST00000547167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000450146	ENST00000547791		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
Frame-shit	ENST00000415288	ENST00000262032		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000415288	ENST00000548601		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000415288	ENST00000431367		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000415288	ENST00000547167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000415288	ENST00000547791		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
Frame-shit	ENST00000553131	ENST00000262032		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000553131	ENST00000548601		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000553131	ENST00000431367		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000553131	ENST00000547167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000553131	ENST00000547791		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
intron-3CDS	ENST00000411731	ENST00000262032		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
intron-3UTR	ENST00000411731	ENST00000548601		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
intron-3UTR	ENST00000411731	ENST00000431367		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
intron-3UTR	ENST00000411731	ENST00000547167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
intron-3UTR	ENST00000411731	ENST00000547791		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
Frame-shit	ENST00000549832	ENST00000262032		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000549832	ENST00000548601		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000549832	ENST00000431367		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000549832	ENST00000547167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5CDS-3UTR	ENST00000549832	ENST00000547791		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	ERBB3	chr12	56493531	+	IKZF4	chr12	56421668	+
5UTR-3CDS	ENST00000303406	ENST00000243103		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	HOXC4	chr12	54411198	+	HOXC12	chr12	54350112	+
intron-3CDS	ENST00000507650	ENST00000243103		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	HOXC4	chr12	54411198	+	HOXC12	chr12	54350112	+
intron-3CDS	ENST00000609810	ENST00000243103		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	HOXC4	chr12	54411198	+	HOXC12	chr12	54350112	+
intron-3CDS	ENST00000430889	ENST00000243103		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	HOXC4	chr12	54411198	+	HOXC12	chr12	54350112	+
5UTR-3CDS	ENST00000394331	ENST00000243103		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	HOXC6	chr12	54411198	+	HOXC12	chr12	54350112	+
intron-3CDS	ENST00000243108	ENST00000243103		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	HOXC6	chr12	54411198	+	HOXC12	chr12	54350112	+
5CDS-3UTR	ENST00000360612	ENST00000317568		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	PIM3	chr22	50356479	+	FRMD8	chr11	65180770	+
5CDS-intron	ENST00000360612	ENST00000531296		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	PIM3	chr22	50356479	+	FRMD8	chr11	65180770	+
5CDS-3UTR	ENST00000360612	ENST00000355991		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	PIM3	chr22	50356479	+	FRMD8	chr11	65180770	+
5CDS-intron	ENST00000360612	ENST00000416776		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	PIM3	chr22	50356479	+	FRMD8	chr11	65180770	+
In-frame	ENST00000368440	ENST00000368444		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	SMPDL3A	chr6	123110603	+	FABP7	chr6	123101436	+
In-frame	ENST00000368440	ENST00000356535		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	SMPDL3A	chr6	123110603	+	FABP7	chr6	123101436	+
3UTR-3CDS	ENST00000487215	ENST00000368444		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	SMPDL3A	chr6	123110603	+	FABP7	chr6	123101436	+
3UTR-3CDS	ENST00000487215	ENST00000356535		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	SMPDL3A	chr6	123110603	+	FABP7	chr6	123101436	+
5UTR-3CDS	ENST00000539041	ENST00000368444		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	SMPDL3A	chr6	123110603	+	FABP7	chr6	123101436	+
5UTR-3CDS	ENST00000539041	ENST00000356535		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	SMPDL3A	chr6	123110603	+	FABP7	chr6	123101436	+
intron-3CDS	ENST00000545826	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000545826	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000545826	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-3CDS	ENST00000513237	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000513237	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000513237	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-3CDS	ENST00000540549	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000540549	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000540549	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-3CDS	ENST00000380013	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-intron	ENST00000380013	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-intron	ENST00000380013	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-3CDS	ENST00000305737	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-intron	ENST00000305737	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-intron	ENST00000305737	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-3CDS	ENST00000394764	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-intron	ENST00000394764	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
5UTR-intron	ENST00000394764	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
3UTR-3CDS	ENST00000504042	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
3UTR-intron	ENST00000504042	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
3UTR-intron	ENST00000504042	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-3CDS	ENST00000413648	ENST00000420470		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000413648	ENST00000508036		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-intron	ENST00000413648	ENST00000265154		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TET2	chr4	106111662	+	ARHGEF38	chr4	106510405	+
intron-3CDS	ENST00000585421	ENST00000453134		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000585421	ENST00000583458		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000585421	ENST00000415831		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000585421	ENST00000582043		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000585421	ENST00000580155		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000585421	ENST00000584778		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-intron	ENST00000585421	ENST00000578887		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000536189	ENST00000453134		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000536189	ENST00000583458		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000536189	ENST00000415831		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000536189	ENST00000582043		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000536189	ENST00000580155		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000536189	ENST00000584778		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-intron	ENST00000536189	ENST00000578887		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
Frame-shit	ENST00000262768	ENST00000453134		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
Frame-shit	ENST00000262768	ENST00000583458		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
Frame-shit	ENST00000262768	ENST00000415831		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
Frame-shit	ENST00000262768	ENST00000582043		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
Frame-shit	ENST00000262768	ENST00000580155		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
Frame-shit	ENST00000262768	ENST00000584778		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
5CDS-intron	ENST00000262768	ENST00000578887		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000586057	ENST00000453134		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000586057	ENST00000583458		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000586057	ENST00000415831		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000586057	ENST00000582043		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000586057	ENST00000580155		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-3CDS	ENST00000586057	ENST00000584778		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
intron-intron	ENST00000586057	ENST00000578887		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TIMP2	chr17	76921041	-	RBFOX3	chr17	77093827	-
In-frame	ENST00000283206	ENST00000295408		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112765960	+
In-frame	ENST00000283206	ENST00000421804		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112765960	+
In-frame	ENST00000283206	ENST00000409780		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112765960	+
intron-3CDS	ENST00000463427	ENST00000295408		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112765960	+
intron-3CDS	ENST00000463427	ENST00000421804		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112765960	+
intron-3CDS	ENST00000463427	ENST00000409780		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	TMEM87B	chr2	112817614	+	MERTK	chr2	112765960	+
Frame-shit	ENST00000400301	ENST00000290167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
5CDS-5UTR	ENST00000400301	ENST00000542383		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
Frame-shit	ENST00000308271	ENST00000290167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
5CDS-5UTR	ENST00000308271	ENST00000542383		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
Frame-shit	ENST00000374732	ENST00000290167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
5CDS-5UTR	ENST00000374732	ENST00000542383		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
Frame-shit	ENST00000529637	ENST00000290167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
5CDS-5UTR	ENST00000529637	ENST00000542383		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
intron-3CDS	ENST00000479177	ENST00000290167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
intron-5UTR	ENST00000479177	ENST00000542383		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
intron-3CDS	ENST00000421625	ENST00000290167		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
intron-5UTR	ENST00000421625	ENST00000542383		TCGA	LD	STAD	TCGA-VQ-AA6D-01A	USP48	chr1	22041882	-	WNT4	chr1	22456344	-
3UTR-3CDS	ENST00000567255	ENST00000244669		TCGA	LD	STAD	TCGA-VQ-AA6F-01A	ADCY10P1	chr6	41105299	+	APOBEC2	chr6	41029067	+
In-frame	ENST00000394126	ENST00000333461		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	MED24	chr17	38209551	-	STAC2	chr17	37369385	-
Frame-shit	ENST00000356271	ENST00000333461		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	MED24	chr17	38209551	-	STAC2	chr17	37369385	-
Frame-shit	ENST00000394128	ENST00000333461		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	MED24	chr17	38209551	-	STAC2	chr17	37369385	-
Frame-shit	ENST00000394127	ENST00000333461		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	MED24	chr17	38209551	-	STAC2	chr17	37369385	-
In-frame	ENST00000501516	ENST00000333461		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	MED24	chr17	38209551	-	STAC2	chr17	37369385	-
5UTR-3CDS	ENST00000479829	ENST00000333461		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	MED24	chr17	38209551	-	STAC2	chr17	37369385	-
5CDS-intron	ENST00000376734	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-5UTR	ENST00000376734	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000376734	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-5UTR	ENST00000540829	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5CDS-intron	ENST00000540829	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-5UTR	ENST00000485864	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
5UTR-intron	ENST00000485864	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000492151	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000492151	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000422484	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000422484	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000486092	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000486092	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000455349	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000455349	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000550336	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550336	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000484570	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000484570	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000433864	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000433864	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000552122	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000552122	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000476528	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000476528	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000449412	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000449412	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000550119	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550119	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000488184	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000488184	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000357569	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000357569	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000550348	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550348	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000469791	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000469791	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000453266	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000453266	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000546863	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000546863	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000477579	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000477579	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000445679	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000445679	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000376881		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000488757		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-5UTR	ENST00000550679	ENST00000376883		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000432222		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000549501		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000549167		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000435906		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000547542		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000548574		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000437216		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000552898		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000552809		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000416974		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000552987		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000548769		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000383628		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000548001		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000548337		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000448114		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000549312		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000553137		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000446005		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
intron-intron	ENST00000550679	ENST00000547911		TCGA	LD	STAD	TCGA-VQ-AA6G-01A	TRIM31	chr6	30076803	-	ZFP57	chr6	29645143	-
In-frame	ENST00000355303	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
5CDS-intron	ENST00000355303	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
In-frame	ENST00000398543	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
5CDS-intron	ENST00000398543	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
In-frame	ENST00000538023	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
5CDS-intron	ENST00000538023	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
In-frame	ENST00000316296	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
5CDS-intron	ENST00000316296	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
In-frame	ENST00000530676	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
5CDS-intron	ENST00000530676	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
intron-3CDS	ENST00000531349	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
intron-intron	ENST00000531349	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
intron-3CDS	ENST00000525494	ENST00000342711		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
intron-intron	ENST00000525494	ENST00000491280		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	ANO1	chr11	69951894	+	CDC42BPG	chr11	64606374	-
In-frame	ENST00000421745	ENST00000345662		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	BIRC6	chr2	32631625	+	SPAST	chr2	32339707	+
In-frame	ENST00000421745	ENST00000315285		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	BIRC6	chr2	32631625	+	SPAST	chr2	32339707	+
Frame-shit	ENST00000221801	ENST00000369002		TCGA	RV	TGCT	TCGA-XE-AANJ-01A	FBL	chr19	40325094	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000221801	ENST00000460009		TCGA	RV	TGCT	TCGA-XE-AANJ-01A	FBL	chr19	40325094	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000593503	ENST00000369002		TCGA	RV	TGCT	TCGA-XE-AANJ-01A	FBL	chr19	40325094	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000593503	ENST00000460009		TCGA	RV	TGCT	TCGA-XE-AANJ-01A	FBL	chr19	40325094	-	SEC63	chr6	108214782	-
5CDS-5UTR	ENST00000436750	ENST00000528712		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000436750	ENST00000335135		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000436750	ENST00000532059		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000455213	ENST00000528712		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000455213	ENST00000335135		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000455213	ENST00000532059		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
intron-5UTR	ENST00000403422	ENST00000528712		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
intron-5UTR	ENST00000403422	ENST00000335135		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
intron-5UTR	ENST00000403422	ENST00000532059		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000528323	ENST00000528712		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000528323	ENST00000335135		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000528323	ENST00000532059		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000284503	ENST00000528712		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000284503	ENST00000335135		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000284503	ENST00000532059		TCGA	RV	TGCT	TCGA-2G-AAGW-01A	NEIL2	chr8	11629094	+	GATA4	chr8	11606428	+
5CDS-5UTR	ENST00000251849	ENST00000314124		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000435575		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000435218		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000251849	ENST00000476331		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000251849	ENST00000431022		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000251849	ENST00000264728		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000314124		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000435575		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000435218		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000442415	ENST00000476331		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000442415	ENST00000431022		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000442415	ENST00000264728		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000314124		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000435575		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000435218		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000534997	ENST00000476331		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000534997	ENST00000431022		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000534997	ENST00000264728		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000314124		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000435575		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000435218		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000542177	ENST00000476331		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-intron	ENST00000542177	ENST00000431022		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000542177	ENST00000264728		TCGA	RV	TGCT	TCGA-XE-AAO4-01A	RAF1	chr3	12632297	-	TMEM40	chr3	12791339	-
5CDS-5UTR	ENST00000393446	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393446	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393446	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393446	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393446	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000265437	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000265437	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000265437	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000265437	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000265437	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393451	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393451	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393451	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393451	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393451	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393449	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000393449	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393449	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393449	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000393449	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000323984	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-5UTR	ENST00000323984	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000323984	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000323984	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
5CDS-intron	ENST00000323984	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000432298	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000432298	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000432298	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000422922	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000422922	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000422922	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000487459	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000487459	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000487459	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000487459	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000487459	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393443	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393443	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393443	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393443	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393443	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393447	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393447	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393447	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393447	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393447	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393444	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000393444	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393444	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393444	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000393444	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000465133	ENST00000397752		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-5UTR	ENST00000465133	ENST00000318493		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000465133	ENST00000436117		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000465133	ENST00000495962		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
intron-intron	ENST00000465133	ENST00000539704		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	ST7	chr7	116593745	+	MET	chr7	116339125	+
3UTR-3CDS	ENST00000482399	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-3CDS	ENST00000482399	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-3CDS	ENST00000482399	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-3CDS	ENST00000482399	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-3CDS	ENST00000482399	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
3UTR-intron	ENST00000482399	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000445902	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000445902	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000445902	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000445902	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000445902	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000445902	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-3CDS	ENST00000478934	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-3CDS	ENST00000478934	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-3CDS	ENST00000478934	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-3CDS	ENST00000478934	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-3CDS	ENST00000478934	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5UTR-intron	ENST00000478934	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000436044	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000436044	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000436044	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000436044	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000436044	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
5CDS-intron	ENST00000436044	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000448042	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000448042	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000448042	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000448042	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000448042	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000448042	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000488583	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000488583	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000488583	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000488583	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000488583	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000488583	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000441058	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000441058	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000441058	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000441058	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000441058	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000441058	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000471761	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000471761	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000471761	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000471761	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000471761	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000471761	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000443860	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000443860	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000443860	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000443860	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000443860	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000443860	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000483351	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000483351	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000483351	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000483351	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000483351	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000483351	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000383210	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000383210	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000383210	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000383210	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000383210	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000383210	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000489236	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000489236	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000489236	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000489236	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000489236	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000489236	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000485418	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000485418	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000485418	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000485418	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000485418	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000485418	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000421357	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000421357	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000421357	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000421357	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000421357	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000421357	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000428608	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000428608	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000428608	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000428608	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000428608	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000428608	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000484649	ENST00000434618		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000484649	ENST00000475304		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000484649	ENST00000489157		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000484649	ENST00000426633		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-3CDS	ENST00000484649	ENST00000456592		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000467834		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000374568		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000374572		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000395114		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000550330		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000552779		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000480059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000437315		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000417059		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000456807		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000549949		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000553235		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000495024		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000383067		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000383066		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000551943		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000383065		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000546700		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000550794		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000461837		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000412144		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000383198		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000548408		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000383197		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000550915		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
intron-intron	ENST00000484649	ENST00000549142		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	VPS52	chr6	33231261	-	TAPBP	chr6	33273164	-
Frame-shit	ENST00000400794	ENST00000369948		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000400794	ENST00000369949		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000400794	ENST00000369945		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000361054	ENST00000369948		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000361054	ENST00000369949		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000361054	ENST00000369945		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369962	ENST00000369948		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369962	ENST00000369949		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369962	ENST00000369945		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369965	ENST00000369948		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369965	ENST00000369949		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000369965	ENST00000369945		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000357672	ENST00000369948		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000357672	ENST00000369949		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000357672	ENST00000369945		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	WDR47	chr1	109565977	-	C1orf194	chr1	109649281	-
Frame-shit	ENST00000588427	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
Frame-shit	ENST00000436106	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
Frame-shit	ENST00000588871	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
intron-3CDS	ENST00000427685	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
Frame-shit	ENST00000588849	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
Frame-shit	ENST00000586564	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
Frame-shit	ENST00000592872	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
In-frame	ENST00000585675	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
5UTR-3CDS	ENST00000591027	ENST00000233596		TCGA	RV	TGCT	TCGA-XE-AANI-01A	C19orf25	chr19	1478773	-	REEP6	chr19	1497173	+
5UTR-3CDS	ENST00000406697	ENST00000396725		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
5UTR-5UTR	ENST00000406697	ENST00000251761		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
5UTR-5UTR	ENST00000406697	ENST00000606935		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
5UTR-intron	ENST00000406697	ENST00000538102		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-3CDS	ENST00000328916	ENST00000396725		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000328916	ENST00000251761		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000328916	ENST00000606935		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-intron	ENST00000328916	ENST00000538102		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-3CDS	ENST00000360817	ENST00000396725		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000360817	ENST00000251761		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000360817	ENST00000606935		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-intron	ENST00000360817	ENST00000538102		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-3CDS	ENST00000402681	ENST00000396725		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000402681	ENST00000251761		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000402681	ENST00000606935		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-intron	ENST00000402681	ENST00000538102		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-3CDS	ENST00000495061	ENST00000396725		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000495061	ENST00000251761		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-5UTR	ENST00000495061	ENST00000606935		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-intron	ENST00000495061	ENST00000538102		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	C1S	chr12	7105434	+	LEPREL2	chr12	6939023	+
intron-3CDS	ENST00000539068	ENST00000373825		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-3CDS	ENST00000539068	ENST00000423325		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-5UTR	ENST00000539068	ENST00000373822		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-5UTR	ENST00000539068	ENST00000373821		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-3CDS	ENST00000536438	ENST00000373825		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-3CDS	ENST00000536438	ENST00000423325		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-5UTR	ENST00000536438	ENST00000373822		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
intron-5UTR	ENST00000536438	ENST00000373821		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-3CDS	ENST00000357266	ENST00000373825		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-3CDS	ENST00000357266	ENST00000423325		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-5UTR	ENST00000357266	ENST00000373822		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-5UTR	ENST00000357266	ENST00000373821		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-3CDS	ENST00000540787	ENST00000373825		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-3CDS	ENST00000540787	ENST00000423325		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-5UTR	ENST00000540787	ENST00000373822		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-5UTR	ENST00000540787	ENST00000373821		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-3CDS	ENST00000542713	ENST00000373825		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-3CDS	ENST00000542713	ENST00000423325		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-5UTR	ENST00000542713	ENST00000373822		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
5UTR-5UTR	ENST00000542713	ENST00000373821		TCGA	RV	TGCT	TCGA-2G-AAGC-01A	FKBP5	chr6	35656581	-	SRPK1	chr6	35858790	-
Frame-shit	ENST00000337431	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000337431	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000337431	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-intron	ENST00000337431	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000354992	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000354992	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000354992	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-intron	ENST00000354992	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000397394	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000397394	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000397394	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-intron	ENST00000397394	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000402320	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000402320	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000402320	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-intron	ENST00000402320	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000452586	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
Frame-shit	ENST00000452586	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000452586	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-intron	ENST00000452586	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
In-frame	ENST00000437602	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
In-frame	ENST00000437602	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000437602	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-intron	ENST00000437602	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
intron-3CDS	ENST00000421232	ENST00000406902		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
intron-3CDS	ENST00000421232	ENST00000361034		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
intron-3UTR	ENST00000421232	ENST00000490378		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
intron-intron	ENST00000421232	ENST00000408031		TCGA	RV	TGCT	TCGA-2G-AAGP-01A	LARGE	chr22	33712071	-	GRAMD4	chr22	47033737	+
5CDS-3UTR	ENST00000261461	ENST00000366933		TCGA	RV	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040364	+
5CDS-3UTR	ENST00000261461	ENST00000471021		TCGA	RV	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040364	+
5CDS-3UTR	ENST00000537030	ENST00000366933		TCGA	RV	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040364	+
5CDS-3UTR	ENST00000537030	ENST00000471021		TCGA	RV	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040364	+
intron-3UTR	ENST00000498129	ENST00000366933		TCGA	RV	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040364	+
intron-3UTR	ENST00000498129	ENST00000471021		TCGA	RV	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040364	+
Frame-shit	ENST00000371847	ENST00000262741		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371847	ENST00000372006		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371847	ENST00000340332		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371847	ENST00000420542		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371847	ENST00000354242		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371847	ENST00000540385		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371847	ENST00000423209		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
5CDS-intron	ENST00000371847	ENST00000488808		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000262741		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000372006		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000340332		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000420542		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000354242		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000540385		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000371843	ENST00000423209		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
5CDS-intron	ENST00000371843	ENST00000488808		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000396199	ENST00000262741		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000396199	ENST00000372006		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
In-frame	ENST00000396199	ENST00000340332		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000396199	ENST00000420542		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000396199	ENST00000354242		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000396199	ENST00000540385		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
Frame-shit	ENST00000396199	ENST00000423209		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
5CDS-intron	ENST00000396199	ENST00000488808		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000262741		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000372006		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000340332		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000420542		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000354242		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000540385		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-3CDS	ENST00000463938	ENST00000423209		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
intron-intron	ENST00000463938	ENST00000488808		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	SPATA6	chr1	48917224	-	PIK3R3	chr1	46543285	-
5UTR-3CDS	ENST00000453658	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-intron	ENST00000453658	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-intron	ENST00000453658	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-intron	ENST00000453658	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-3CDS	ENST00000377259	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-intron	ENST00000377259	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-intron	ENST00000377259	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
5UTR-intron	ENST00000377259	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-3CDS	ENST00000377245	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000377245	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000377245	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000377245	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-3CDS	ENST00000348208	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000348208	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000348208	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000348208	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-3CDS	ENST00000265384	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000265384	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000265384	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000265384	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-3CDS	ENST00000535702	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000535702	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000535702	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000535702	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-3CDS	ENST00000539225	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000539225	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000539225	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000539225	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-3CDS	ENST00000498204	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000498204	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000498204	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-intron	ENST00000498204	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AALW-01A	TJP2	chr9	71766687	+	FXN	chr9	71714817	+
intron-5UTR	ENST00000298834	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000426438	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000314845	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
5UTR-5UTR	ENST00000533727	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
5UTR-5UTR	ENST00000534300	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000458649	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
5UTR-5UTR	ENST00000528950	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
intron-5UTR	ENST00000529963	ENST00000326737		TCGA	RV	TGCT	TCGA-XE-AAOD-01A	AMBRA1	chr11	46615378	-	HARBI1	chr11	46637931	-
Frame-shit	ENST00000202816	ENST00000545145		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	ESF1	chr20	13709025	-	RBM19	chr12	114296701	-
Frame-shit	ENST00000202816	ENST00000392561		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	ESF1	chr20	13709025	-	RBM19	chr12	114296701	-
Frame-shit	ENST00000202816	ENST00000261741		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	ESF1	chr20	13709025	-	RBM19	chr12	114296701	-
5CDS-intron	ENST00000202816	ENST00000553232		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	ESF1	chr20	13709025	-	RBM19	chr12	114296701	-
Frame-shit	ENST00000270115	ENST00000338675		TCGA	RV	TGCT	TCGA-2G-AAM3-01A	LRRC56	chr11	549998	+	DEAF1	chr11	679816	-
Frame-shit	ENST00000270115	ENST00000382409		TCGA	RV	TGCT	TCGA-2G-AAM3-01A	LRRC56	chr11	549998	+	DEAF1	chr11	679816	-
5CDS-5UTR	ENST00000270115	ENST00000525904		TCGA	RV	TGCT	TCGA-2G-AAM3-01A	LRRC56	chr11	549998	+	DEAF1	chr11	679816	-
Frame-shit	ENST00000472487	ENST00000371120		TCGA	RV	TGCT	TCGA-YU-AA61-01A	MYSM1	chr1	59165657	-	ATG4C	chr1	63329663	+
Frame-shit	ENST00000472487	ENST00000317868		TCGA	RV	TGCT	TCGA-YU-AA61-01A	MYSM1	chr1	59165657	-	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000493821	ENST00000371120		TCGA	RV	TGCT	TCGA-YU-AA61-01A	MYSM1	chr1	59165657	-	ATG4C	chr1	63329663	+
intron-3CDS	ENST00000493821	ENST00000317868		TCGA	RV	TGCT	TCGA-YU-AA61-01A	MYSM1	chr1	59165657	-	ATG4C	chr1	63329663	+
Frame-shit	ENST00000442668	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000442668	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000442668	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
5CDS-5UTR	ENST00000442668	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000358855	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000358855	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000358855	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
5CDS-5UTR	ENST00000358855	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
In-frame	ENST00000545558	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
In-frame	ENST00000545558	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
In-frame	ENST00000545558	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
5CDS-5UTR	ENST00000545558	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
In-frame	ENST00000535387	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
In-frame	ENST00000535387	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
In-frame	ENST00000535387	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
5CDS-5UTR	ENST00000535387	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000542053	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000542053	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
Frame-shit	ENST00000542053	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
5CDS-5UTR	ENST00000542053	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
intron-3CDS	ENST00000543985	ENST00000396364		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
intron-3CDS	ENST00000543985	ENST00000377270		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
intron-3CDS	ENST00000543985	ENST00000396366		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
intron-5UTR	ENST00000543985	ENST00000498653		TCGA	RV	TGCT	TCGA-2G-AAM4-01A	NOL8	chr9	95076549	-	FXN	chr9	71661301	+
5UTR-3CDS	ENST00000259467	ENST00000372398		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	PDCL	chr9	125590750	-	NCS1	chr9	132980111	+
5UTR-3UTR	ENST00000259467	ENST00000493042		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	PDCL	chr9	125590750	-	NCS1	chr9	132980111	+
5UTR-3UTR	ENST00000259467	ENST00000458469		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	PDCL	chr9	125590750	-	NCS1	chr9	132980111	+
Frame-shit	ENST00000426016	ENST00000263881		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000426016	ENST00000437545		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000426016	ENST00000341681		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000426016	ENST00000484274		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000426016	ENST00000536018		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000426016	ENST00000474502		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
In-frame	ENST00000402219	ENST00000263881		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000402219	ENST00000437545		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000402219	ENST00000341681		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000402219	ENST00000484274		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000402219	ENST00000536018		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000402219	ENST00000474502		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
In-frame	ENST00000395038	ENST00000263881		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000395038	ENST00000437545		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000395038	ENST00000341681		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000395038	ENST00000484274		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000395038	ENST00000536018		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000395038	ENST00000474502		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
Frame-shit	ENST00000428721	ENST00000263881		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000428721	ENST00000437545		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000428721	ENST00000341681		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000428721	ENST00000484274		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000428721	ENST00000536018		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000428721	ENST00000474502		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
intron-3CDS	ENST00000472480	ENST00000263881		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
intron-5UTR	ENST00000472480	ENST00000437545		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
intron-5UTR	ENST00000472480	ENST00000341681		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
intron-5UTR	ENST00000472480	ENST00000484274		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
intron-intron	ENST00000472480	ENST00000536018		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
intron-intron	ENST00000472480	ENST00000474502		TCGA	RV	TGCT	TCGA-XE-AANR-01A	SOS1	chr2	39278285	-	MAP4K3	chr2	39605264	-
Frame-shit	ENST00000383763	ENST00000331889		TCGA	RV	TGCT	TCGA-XY-A8S3-01B	TRIM71	chr3	32860424	+	CNOT10	chr3	32814949	+
In-frame	ENST00000383763	ENST00000328834		TCGA	RV	TGCT	TCGA-XY-A8S3-01B	TRIM71	chr3	32860424	+	CNOT10	chr3	32814949	+
5CDS-intron	ENST00000383763	ENST00000538368		TCGA	RV	TGCT	TCGA-XY-A8S3-01B	TRIM71	chr3	32860424	+	CNOT10	chr3	32814949	+
5CDS-intron	ENST00000383763	ENST00000454516		TCGA	RV	TGCT	TCGA-XY-A8S3-01B	TRIM71	chr3	32860424	+	CNOT10	chr3	32814949	+
5CDS-intron	ENST00000383763	ENST00000463697		TCGA	RV	TGCT	TCGA-XY-A8S3-01B	TRIM71	chr3	32860424	+	CNOT10	chr3	32814949	+
Frame-shit	ENST00000355312	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000355312	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000356259	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000356259	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000338373	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000338373	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000360185	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000360185	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000343646	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000343646	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000354574	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000354574	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000457474	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000457474	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000361006	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000361006	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000553118	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000553118	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000551209	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000551209	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000548655	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
intron-3CDS	ENST00000548655	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000547815	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000547815	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000320063	ENST00000280871		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
Frame-shit	ENST00000320063	ENST00000380858		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	GIT2	chr12	110426768	-	SLC2A13	chr12	40345167	-
In-frame	ENST00000377069	ENST00000330079		TCGA	RV	TGCT	TCGA-2G-AAL5-01A	KDM2B	chr12	122012452	-	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000542973	ENST00000330079		TCGA	RV	TGCT	TCGA-2G-AAL5-01A	KDM2B	chr12	122012452	-	ORAI1	chr12	122078947	+
In-frame	ENST00000377071	ENST00000330079		TCGA	RV	TGCT	TCGA-2G-AAL5-01A	KDM2B	chr12	122012452	-	ORAI1	chr12	122078947	+
Frame-shit	ENST00000536437	ENST00000330079		TCGA	RV	TGCT	TCGA-2G-AAL5-01A	KDM2B	chr12	122012452	-	ORAI1	chr12	122078947	+
In-frame	ENST00000538046	ENST00000330079		TCGA	RV	TGCT	TCGA-2G-AAL5-01A	KDM2B	chr12	122012452	-	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000543852	ENST00000330079		TCGA	RV	TGCT	TCGA-2G-AAL5-01A	KDM2B	chr12	122012452	-	ORAI1	chr12	122078947	+
Frame-shit	ENST00000282570	ENST00000429174		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000409762		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000413539		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000409582		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000258104		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000410020		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000409744		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000409651		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000410041		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000409366		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000282570	ENST00000394120		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
5CDS-intron	ENST00000282570	ENST00000479049		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000429174		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000409762		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000413539		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000409582		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000258104		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000410020		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000409744		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000409651		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000410041		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000409366		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-3CDS	ENST00000468386	ENST00000394120		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
3UTR-intron	ENST00000468386	ENST00000479049		TCGA	RV	TGCT	TCGA-4K-AA1G-01A	GMCL1	chr2	70057284	+	DYSF	chr2	71708013	+
Frame-shit	ENST00000361961	ENST00000546373		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000361961	ENST00000551568		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000361961	ENST00000338356		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
5CDS-intron	ENST00000361961	ENST00000549691		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000395670	ENST00000546373		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000395670	ENST00000551568		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000395670	ENST00000338356		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
5CDS-intron	ENST00000395670	ENST00000549691		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000544797	ENST00000546373		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000544797	ENST00000551568		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000544797	ENST00000338356		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
5CDS-intron	ENST00000544797	ENST00000549691		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000361418	ENST00000546373		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000361418	ENST00000551568		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000361418	ENST00000338356		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
5CDS-intron	ENST00000361418	ENST00000549691		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000541463	ENST00000546373		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000541463	ENST00000551568		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
Frame-shit	ENST00000541463	ENST00000338356		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
5CDS-intron	ENST00000541463	ENST00000549691		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000547745	ENST00000546373		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000547745	ENST00000551568		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
intron-3CDS	ENST00000547745	ENST00000338356		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
intron-intron	ENST00000547745	ENST00000549691		TCGA	RV	TGCT	TCGA-2G-AAGT-01A	KIF21A	chr12	39836729	-	CPM	chr12	69279669	-
In-frame	ENST00000383737	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000383737	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000383737	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000383737	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000383737	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000383737	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000383737	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000383737	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000383737	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000383737	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000383737	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000383737	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000395734	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000395734	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000395734	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000395734	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000395734	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000395734	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000395734	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000395734	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000395734	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000395734	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000395734	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000395734	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000426837	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000426837	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000426837	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000426837	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000426837	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000426837	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000426837	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000426837	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000426837	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000426837	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000426837	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000426837	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000360240	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000360240	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000360240	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000360240	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000360240	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000360240	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000360240	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000360240	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000360240	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000360240	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000360240	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000360240	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000439356	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000439356	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000439356	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000439356	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
In-frame	ENST00000439356	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000439356	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000439356	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000439356	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000439356	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000439356	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000439356	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000439356	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000264724	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000264724	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000264724	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000264724	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000264724	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000264724	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000264724	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000264724	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000264724	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000264724	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000264724	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000264724	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000420772	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000420772	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000420772	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000420772	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000420772	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000420772	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000420772	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000420772	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000420772	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000420772	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000420772	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000420772	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000441748	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000441748	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000441748	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000441748	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000441748	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000441748	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000441748	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000441748	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000441748	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000441748	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000441748	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000441748	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000462206	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000462206	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000462206	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000462206	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-3CDS	ENST00000462206	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000462206	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000462206	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000462206	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-intron	ENST00000462206	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000462206	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000462206	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
intron-5UTR	ENST00000462206	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
Frame-shit	ENST00000434267	ENST00000421967		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
Frame-shit	ENST00000434267	ENST00000426689		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
Frame-shit	ENST00000434267	ENST00000452211		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
Frame-shit	ENST00000434267	ENST00000450160		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
Frame-shit	ENST00000434267	ENST00000426723		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000434267	ENST00000444069		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000434267	ENST00000415644		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000434267	ENST00000415053		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-intron	ENST00000434267	ENST00000442597		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000434267	ENST00000447314		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000434267	ENST00000451657		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5CDS-5UTR	ENST00000434267	ENST00000435684		TCGA	RV	TGCT	TCGA-2G-AAH8-01A	MAP4	chr3	48019355	-	NME6	chr3	48338319	-
5UTR-3CDS	ENST00000544172	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-5UTR	ENST00000544172	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-3CDS	ENST00000397501	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-5UTR	ENST00000397501	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-3CDS	ENST00000338238	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-5UTR	ENST00000338238	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-3CDS	ENST00000346049	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-5UTR	ENST00000346049	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-3CDS	ENST00000420218	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
5UTR-5UTR	ENST00000420218	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
intron-3CDS	ENST00000517339	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
intron-5UTR	ENST00000517339	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
intron-3CDS	ENST00000519650	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
intron-5UTR	ENST00000519650	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
intron-3CDS	ENST00000397497	ENST00000266088		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
intron-5UTR	ENST00000397497	ENST00000543737		TCGA	RV	TGCT	TCGA-YU-A94I-01A	PTK2B	chr8	27183198	+	SLC5A1	chr22	32462922	+
In-frame	ENST00000443326	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000443326	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000443326	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000443326	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000414585	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000414585	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000414585	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000414585	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000540643	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000540643	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000540643	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000540643	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000432498	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000432498	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000432498	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000432498	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000443011	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000443011	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000443011	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000443011	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000400289	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000400289	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000400289	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000400289	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000400288	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
In-frame	ENST00000400288	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000400288	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-intron	ENST00000400288	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
intron-3CDS	ENST00000474741	ENST00000440314		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
intron-3CDS	ENST00000474741	ENST00000444507		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
intron-intron	ENST00000474741	ENST00000252322		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
intron-intron	ENST00000474741	ENST00000514026		TCGA	RV	TGCT	TCGA-VF-A8AD-01A	SFI1	chr22	31985563	+	EFCAB4B	chr12	3753806	-
5CDS-3UTR	ENST00000244745	ENST00000318789		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000244745	ENST00000475937		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000493089		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000484350		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000318779		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000491238		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000498215		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000468577		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000244745	ENST00000472382		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000543472	ENST00000318789		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000543472	ENST00000475937		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000493089		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000484350		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000318779		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000491238		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000498215		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000468577		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000543472	ENST00000472382		TCGA	RV	TGCT	TCGA-2G-AAF4-01A	SOX4	chr6	21598847	+	FOXP1	chr3	71007472	-
In-frame	ENST00000373566	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373566	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
In-frame	ENST00000373563	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000373563	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
In-frame	ENST00000409480	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409480	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
In-frame	ENST00000409547	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409547	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
In-frame	ENST00000409196	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409196	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
In-frame	ENST00000409451	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
5CDS-intron	ENST00000409451	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-3CDS	ENST00000482666	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000482666	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-3CDS	ENST00000452341	ENST00000409514		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000409098		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000409394		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000258416		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000409495		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000409167		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000409322		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
intron-intron	ENST00000452341	ENST00000479834		TCGA	RV	TGCT	TCGA-2G-AALQ-01A	GIGYF2	chr2	233612454	+	EIF4E2	chr2	233438973	+
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	TGCT	TCGA-2G-AAGX-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	TGCT	TCGA-2G-AAGX-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
In-frame	ENST00000333891	ENST00000422959		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000307305		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000424760		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000415251		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000275575		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000450574		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000416283		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000333891	ENST00000248550		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
5CDS-intron	ENST00000333891	ENST00000454592		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000422959		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000307305		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000424760		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000415251		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000275575		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000450574		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000416283		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000423517	ENST00000248550		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
5CDS-intron	ENST00000423517	ENST00000454592		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000422959		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000307305		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000424760		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000415251		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000275575		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000450574		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000416283		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000437081	ENST00000248550		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-intron	ENST00000437081	ENST00000454592		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000422959		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000307305		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000424760		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000415251		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000275575		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000450574		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000416283		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-3CDS	ENST00000426442	ENST00000248550		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
intron-intron	ENST00000426442	ENST00000454592		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	PCLO	chr7	82763566	-	PHTF2	chr7	77530028	+
In-frame	ENST00000252542	ENST00000360614		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
In-frame	ENST00000252542	ENST00000585374		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
Frame-shit	ENST00000252542	ENST00000593119		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
In-frame	ENST00000252542	ENST00000540670		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
In-frame	ENST00000252542	ENST00000590729		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
5CDS-intron	ENST00000252542	ENST00000590511		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
intron-3CDS	ENST00000591310	ENST00000360614		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
intron-3CDS	ENST00000591310	ENST00000585374		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
intron-3CDS	ENST00000591310	ENST00000593119		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
intron-3CDS	ENST00000591310	ENST00000540670		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
intron-3CDS	ENST00000591310	ENST00000590729		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
intron-intron	ENST00000591310	ENST00000590511		TCGA	RV	TGCT	TCGA-2G-AAFL-01A	SAFB2	chr19	5621320	-	LONP1	chr19	5692219	-
5CDS-5UTR	ENST00000309930	ENST00000005257		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-intron	ENST00000309930	ENST00000468201		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-5UTR	ENST00000401647	ENST00000005257		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-intron	ENST00000401647	ENST00000468201		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-5UTR	ENST00000335693	ENST00000005257		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-intron	ENST00000335693	ENST00000468201		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
intron-5UTR	ENST00000464028	ENST00000005257		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
intron-intron	ENST00000464028	ENST00000468201		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-5UTR	ENST00000540834	ENST00000005257		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
5CDS-intron	ENST00000540834	ENST00000468201		TCGA	RV	TGCT	TCGA-2G-AAF6-01A	C7orf10	chr7	40174719	+	RALA	chr7	39726230	+
intron-intron	ENST00000586702	ENST00000586218		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000593256		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000447337		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000354882		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000586590		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000586956		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000589555		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000587948		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000586702	ENST00000588560		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-intron	ENST00000294618	ENST00000586218		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000593256		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000447337		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000354882		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000586590		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000586956		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000589555		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000587948		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
5CDS-5UTR	ENST00000294618	ENST00000588560		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-intron	ENST00000319867	ENST00000586218		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000593256		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000447337		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000354882		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000586590		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000586956		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000589555		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000587948		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
intron-5UTR	ENST00000319867	ENST00000588560		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	DOCK6	chr19	11352721	-	TMEM205	chr19	11456304	-
In-frame	ENST00000344537	ENST00000580974		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000344537	ENST00000299954		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000344537	ENST00000335257		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000344537	ENST00000581322		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000355917	ENST00000580974		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000355917	ENST00000299954		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000355917	ENST00000335257		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000355917	ENST00000581322		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000338950	ENST00000580974		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000338950	ENST00000299954		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000338950	ENST00000335257		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
In-frame	ENST00000338950	ENST00000581322		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000462989	ENST00000580974		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000462989	ENST00000299954		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000462989	ENST00000335257		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
intron-3CDS	ENST00000462989	ENST00000581322		TCGA	RV	TGCT	TCGA-2G-AALW-01A	DTNBP1	chr6	15663045	-	PITPNC1	chr17	65665624	+
5CDS-5UTR	ENST00000264741	ENST00000320159		TCGA	RV	TGCT	TCGA-YU-AA4L-01A	ITGA9	chr3	37584076	+	ZNF48	chr16	30407101	+
5CDS-5UTR	ENST00000422441	ENST00000320159		TCGA	RV	TGCT	TCGA-YU-AA4L-01A	ITGA9	chr3	37584076	+	ZNF48	chr16	30407101	+
5CDS-5UTR	ENST00000539107	ENST00000541908		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000539107	ENST00000398864		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000539107	ENST00000266508		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000539107	ENST00000360995		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000545336	ENST00000541908		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000545336	ENST00000398864		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000545336	ENST00000266508		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000545336	ENST00000360995		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381256	ENST00000541908		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381256	ENST00000398864		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381256	ENST00000266508		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381256	ENST00000360995		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381259	ENST00000541908		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381259	ENST00000398864		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381259	ENST00000266508		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
5CDS-5UTR	ENST00000381259	ENST00000360995		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000540401	ENST00000541908		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000540401	ENST00000398864		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000540401	ENST00000266508		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000540401	ENST00000360995		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000306172	ENST00000541908		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000306172	ENST00000398864		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000306172	ENST00000266508		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
intron-5UTR	ENST00000306172	ENST00000360995		TCGA	RV	TGCT	TCGA-2G-AAF8-01A	CCDC91	chr12	28412375	+	AEBP2	chr12	19615444	+
In-frame	ENST00000250113	ENST00000413465		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
In-frame	ENST00000250113	ENST00000359597		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
In-frame	ENST00000250113	ENST00000269305		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
In-frame	ENST00000250113	ENST00000455263		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
In-frame	ENST00000250113	ENST00000420246		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
In-frame	ENST00000250113	ENST00000445888		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
5CDS-5UTR	ENST00000250113	ENST00000574684		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-3CDS	ENST00000573057	ENST00000413465		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-3CDS	ENST00000573057	ENST00000359597		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-3CDS	ENST00000573057	ENST00000269305		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-3CDS	ENST00000573057	ENST00000455263		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-3CDS	ENST00000573057	ENST00000420246		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-3CDS	ENST00000573057	ENST00000445888		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
intron-5UTR	ENST00000573057	ENST00000574684		TCGA	RV	TGCT	TCGA-YU-AA61-01A	FXR2	chr17	7504727	-	TP53	chr17	7577608	-
Frame-shit	ENST00000326279	ENST00000374213		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	LIN28A	chr1	26738073	+	CD52	chr1	26646662	+
5CDS-intron	ENST00000326279	ENST00000492808		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	LIN28A	chr1	26738073	+	CD52	chr1	26646662	+
Frame-shit	ENST00000254231	ENST00000374213		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	LIN28A	chr1	26738073	+	CD52	chr1	26646662	+
5CDS-intron	ENST00000254231	ENST00000492808		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	LIN28A	chr1	26738073	+	CD52	chr1	26646662	+
In-frame	ENST00000302538	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000302538	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
Frame-shit	ENST00000544583	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
Frame-shit	ENST00000544583	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
intron-3CDS	ENST00000572441	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
intron-3CDS	ENST00000572441	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000574437	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000574437	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000291107	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000291107	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
intron-3CDS	ENST00000543210	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
intron-3CDS	ENST00000543210	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000536794	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000536794	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
intron-3CDS	ENST00000573895	ENST00000313486		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
intron-3CDS	ENST00000573895	ENST00000539476		TCGA	RV	TGCT	TCGA-2G-AAH4-01A	ABR	chr17	953290	-	PITPNA	chr17	1444934	-
In-frame	ENST00000264158	ENST00000356140		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
In-frame	ENST00000264158	ENST00000283054		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
In-frame	ENST00000264158	ENST00000392928		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000539493	ENST00000356140		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000539493	ENST00000283054		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
5UTR-3CDS	ENST00000539493	ENST00000392928		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
In-frame	ENST00000442034	ENST00000356140		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
In-frame	ENST00000442034	ENST00000283054		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
In-frame	ENST00000442034	ENST00000392928		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000487003	ENST00000356140		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000487003	ENST00000283054		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
intron-3CDS	ENST00000487003	ENST00000392928		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000425393	ENST00000356140		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000425393	ENST00000283054		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
Frame-shit	ENST00000425393	ENST00000392928		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	RAB3GAP1	chr2	135815656	+	ACMSD	chr2	135655911	+
5CDS-5UTR	ENST00000311172	ENST00000344743		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000311172	ENST00000529732		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000311172	ENST00000278400		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409314	ENST00000344743		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409314	ENST00000529732		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409314	ENST00000278400		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409418	ENST00000344743		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409418	ENST00000529732		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409418	ENST00000278400		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
intron-5UTR	ENST00000458644	ENST00000344743		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
intron-5UTR	ENST00000458644	ENST00000529732		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
intron-5UTR	ENST00000458644	ENST00000278400		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409853	ENST00000344743		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409853	ENST00000529732		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
5CDS-5UTR	ENST00000409853	ENST00000278400		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
intron-5UTR	ENST00000409263	ENST00000344743		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
intron-5UTR	ENST00000409263	ENST00000529732		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
intron-5UTR	ENST00000409263	ENST00000278400		TCGA	RV	TGCT	TCGA-SB-A76C-01A	FCHSD2	chr11	72712035	-	GLYAT	chr11	58491984	-
Frame-shit	ENST00000370828	ENST00000370818		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	GPC4	chrX	132548834	-	GPC3	chrX	132670321	-
Frame-shit	ENST00000370828	ENST00000394299		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	GPC4	chrX	132548834	-	GPC3	chrX	132670321	-
In-frame	ENST00000370828	ENST00000543339		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	GPC4	chrX	132548834	-	GPC3	chrX	132670321	-
intron-3CDS	ENST00000535467	ENST00000370818		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	GPC4	chrX	132548834	-	GPC3	chrX	132670321	-
intron-3CDS	ENST00000535467	ENST00000394299		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	GPC4	chrX	132548834	-	GPC3	chrX	132670321	-
intron-3CDS	ENST00000535467	ENST00000543339		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	GPC4	chrX	132548834	-	GPC3	chrX	132670321	-
Frame-shit	ENST00000436874	ENST00000343958		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
Frame-shit	ENST00000436874	ENST00000546711		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
Frame-shit	ENST00000436874	ENST00000549499		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
5CDS-intron	ENST00000436874	ENST00000550368		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
5UTR-3CDS	ENST00000261219	ENST00000343958		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
5UTR-3CDS	ENST00000261219	ENST00000546711		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
5UTR-3CDS	ENST00000261219	ENST00000549499		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
5UTR-intron	ENST00000261219	ENST00000550368		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
intron-3CDS	ENST00000356859	ENST00000343958		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
intron-3CDS	ENST00000356859	ENST00000546711		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
intron-3CDS	ENST00000356859	ENST00000549499		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
intron-intron	ENST00000356859	ENST00000550368		TCGA	RV	TGCT	TCGA-WZ-A7V3-01A	VEZT	chr12	95611662	+	FGD6	chr12	95502337	-
5CDS-intron	ENST00000348959	ENST00000327791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000348959	ENST00000442791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000348959	ENST00000534854		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000348959	ENST00000380790		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000348959	ENST00000380788		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000348959	ENST00000541702		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000348959	ENST00000555248		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000327791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000442791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000534854		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000380790		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000380788		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000541702		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000261173	ENST00000555248		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000327791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000442791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000534854		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000380790		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000380788		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000541702		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000359142	ENST00000555248		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000327791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000442791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000534854		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000380790		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000380788		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000541702		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000428670	ENST00000555248		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000327791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000442791		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000534854		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000380790		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000380788		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000541702		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
5CDS-intron	ENST00000393164	ENST00000555248		TCGA	RV	TGCT	TCGA-2G-AAGG-01A	ATP2B1	chr12	90021455	-	YAF2	chr12	42593037	-
In-frame	ENST00000335221	ENST00000253247		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-3UTR	ENST00000335221	ENST00000581966		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-5UTR	ENST00000335221	ENST00000535137		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
In-frame	ENST00000321892	ENST00000253247		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-3UTR	ENST00000321892	ENST00000581966		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-5UTR	ENST00000321892	ENST00000535137		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
In-frame	ENST00000306378	ENST00000253247		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-3UTR	ENST00000306378	ENST00000581966		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-5UTR	ENST00000306378	ENST00000535137		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
In-frame	ENST00000424123	ENST00000253247		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-3UTR	ENST00000424123	ENST00000581966		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
5CDS-5UTR	ENST00000424123	ENST00000535137		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
intron-3CDS	ENST00000577770	ENST00000253247		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
intron-3UTR	ENST00000577770	ENST00000581966		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
intron-5UTR	ENST00000577770	ENST00000535137		TCGA	RV	TGCT	TCGA-2G-AAKL-01A	BPTF	chr17	65944422	+	NOL11	chr17	65715790	+
intron-3CDS	ENST00000445912	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000445912	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000445912	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000445912	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-intron	ENST00000445912	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000252034	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000252034	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000252034	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000252034	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000252034	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000358929	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000358929	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000358929	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000358929	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000358929	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000320492	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000320492	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000320492	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000320492	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000320492	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000414324	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000414324	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000414324	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000414324	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000414324	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000380562	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000380562	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000380562	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000380562	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-intron	ENST00000380562	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380575	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380575	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380575	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380575	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000380575	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000380584	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000380584	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000380584	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000380584	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000380584	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000458204	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000458204	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000458204	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000458204	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000458204	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000357036	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000357036	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000357036	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000357036	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000357036	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000429192	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000429192	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000429192	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-3CDS	ENST00000429192	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
3UTR-intron	ENST00000429192	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000380553	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000380553	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000380553	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
Frame-shit	ENST00000380553	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000380553	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380576	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380576	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380576	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000380576	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
5CDS-intron	ENST00000380576	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000320399	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000320399	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000320399	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000320399	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-intron	ENST00000320399	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000466878	ENST00000404984		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000466878	ENST00000402050		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000466878	ENST00000438376		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-3CDS	ENST00000466878	ENST00000325979		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
intron-intron	ENST00000466878	ENST00000497572		TCGA	RV	TGCT	TCGA-XE-AANI-01A	ELN	chr7	73484007	+	IQCE	chr7	2641075	+
In-frame	ENST00000438493	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000438493	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000438493	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000452682	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000452682	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000452682	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
intron-3CDS	ENST00000498586	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000498586	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000498586	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000430396	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000430396	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000430396	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000374087	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000374087	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000374087	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000414907	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000414907	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000414907	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000344348	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000344348	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000344348	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
intron-3CDS	ENST00000374082	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000374082	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
intron-3UTR	ENST00000374082	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000443446	ENST00000358559		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000443446	ENST00000474170		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
5CDS-3UTR	ENST00000443446	ENST00000298239		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	NCOA4	chr10	51585599	+	MSMB	chr10	51555731	+
In-frame	ENST00000372699	ENST00000360403		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372699	ENST00000372183		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372699	ENST00000480675		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
In-frame	ENST00000372696	ENST00000360403		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372696	ENST00000372183		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372696	ENST00000480675		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
In-frame	ENST00000372697	ENST00000360403		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372697	ENST00000372183		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
5CDS-intron	ENST00000372697	ENST00000480675		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
3UTR-3CDS	ENST00000493756	ENST00000360403		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
3UTR-intron	ENST00000493756	ENST00000372183		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
3UTR-intron	ENST00000493756	ENST00000480675		TCGA	RV	TGCT	TCGA-XY-A8S2-01A	ZNF684	chr1	40998853	+	EIF2B3	chr1	45316675	-
Frame-shit	ENST00000548411	ENST00000542728		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000548411	ENST00000314565		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000548411	ENST00000298571		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000281474	ENST00000542728		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000281474	ENST00000314565		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000281474	ENST00000298571		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
In-frame	ENST00000551848	ENST00000542728		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
In-frame	ENST00000551848	ENST00000314565		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
In-frame	ENST00000551848	ENST00000298571		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000550207	ENST00000542728		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000550207	ENST00000314565		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000550207	ENST00000298571		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000551086	ENST00000542728		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000551086	ENST00000314565		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000551086	ENST00000298571		TCGA	RV	TGCT	TCGA-2G-AAKD-01A	BICD1	chr12	32260478	+	LOH12CR1	chr12	12588562	+
Frame-shit	ENST00000315127	ENST00000254488		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
5CDS-intron	ENST00000315127	ENST00000454147		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
In-frame	ENST00000426797	ENST00000254488		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
5CDS-intron	ENST00000426797	ENST00000454147		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
Frame-shit	ENST00000568176	ENST00000254488		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
5CDS-intron	ENST00000568176	ENST00000454147		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
intron-3CDS	ENST00000562047	ENST00000254488		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
intron-intron	ENST00000562047	ENST00000454147		TCGA	RV	TGCT	TCGA-2G-AAGA-01A	EDC3	chr15	74948074	-	SLC6A11	chr3	10967690	+
intron-intron	ENST00000389462	ENST00000216297		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	PTMS	chr12	6880109	+	SUPT16H	chr14	21829491	-
intron-intron	ENST00000389462	ENST00000555943		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	PTMS	chr12	6880109	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000309083	ENST00000216297		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	PTMS	chr12	6880109	+	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000309083	ENST00000555943		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	PTMS	chr12	6880109	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000538057	ENST00000216297		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	PTMS	chr12	6880109	+	SUPT16H	chr14	21829491	-
3UTR-intron	ENST00000538057	ENST00000555943		TCGA	RV	TGCT	TCGA-2G-AAFV-01A	PTMS	chr12	6880109	+	SUPT16H	chr14	21829491	-
In-frame	ENST00000302516	ENST00000368679		TCGA	RV	TGCT	TCGA-2G-AAFI-01A	SF3B3	chr16	70604052	+	ADAM12	chr10	127967557	-
In-frame	ENST00000302516	ENST00000368676		TCGA	RV	TGCT	TCGA-2G-AAFI-01A	SF3B3	chr16	70604052	+	ADAM12	chr10	127967557	-
5CDS-intron	ENST00000302516	ENST00000467145		TCGA	RV	TGCT	TCGA-2G-AAFI-01A	SF3B3	chr16	70604052	+	ADAM12	chr10	127967557	-
5CDS-intron	ENST00000309311	ENST00000354185		TCGA	RV	TGCT	TCGA-SB-A6J6-01A	EEF2	chr19	3976055	-	DDX21	chr10	70723858	+
intron-intron	ENST00000600720	ENST00000354185		TCGA	RV	TGCT	TCGA-SB-A6J6-01A	EEF2	chr19	3976055	-	DDX21	chr10	70723858	+
5CDS-5UTR	ENST00000261349	ENST00000535902		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000261349	ENST00000396349		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000261349	ENST00000545735		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000543091	ENST00000535902		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
5CDS-5UTR	ENST00000543091	ENST00000396349		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
5CDS-intron	ENST00000543091	ENST00000545735		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000540415	ENST00000535902		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
intron-5UTR	ENST00000540415	ENST00000396349		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
intron-intron	ENST00000540415	ENST00000545735		TCGA	RV	TGCT	TCGA-XE-AANI-01A	LRP6	chr12	12397196	-	MANSC1	chr12	12496348	-
Frame-shit	ENST00000343813	ENST00000608083		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000343813	ENST00000377855		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000343813	ENST00000545482		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
In-frame	ENST00000343813	ENST00000361521		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
Frame-shit	ENST00000343813	ENST00000377842		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
In-frame	ENST00000343813	ENST00000377845		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
5CDS-intron	ENST00000343813	ENST00000541130		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000495791	ENST00000608083		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000495791	ENST00000377855		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000495791	ENST00000545482		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000495791	ENST00000361521		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000495791	ENST00000377842		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000495791	ENST00000377845		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-intron	ENST00000495791	ENST00000541130		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000362035	ENST00000608083		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000362035	ENST00000377855		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000362035	ENST00000545482		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000362035	ENST00000361521		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000362035	ENST00000377842		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-3CDS	ENST00000362035	ENST00000377845		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
intron-intron	ENST00000362035	ENST00000541130		TCGA	RV	TGCT	TCGA-2G-AAG8-01A	ICMT	chr1	6291962	-	ACOT7	chr1	6324755	-
5UTR-3CDS	ENST00000340513	ENST00000376309		TCGA	RV	TGCT	TCGA-VF-A8AA-01A	TPX2	chr20	30330450	+	DEFB123	chr20	30037832	+
5UTR-3CDS	ENST00000300403	ENST00000376309		TCGA	RV	TGCT	TCGA-VF-A8AA-01A	TPX2	chr20	30330450	+	DEFB123	chr20	30037832	+
5CDS-5UTR	ENST00000261349	ENST00000433346		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-3UTR	ENST00000261349	ENST00000449039		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000261349	ENST00000007969		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000261349	ENST00000323702		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000261349	ENST00000443597		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000261349	ENST00000436789		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-intron	ENST00000261349	ENST00000429740		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000543091	ENST00000433346		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-3UTR	ENST00000543091	ENST00000449039		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000543091	ENST00000007969		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000543091	ENST00000323702		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000543091	ENST00000443597		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-5UTR	ENST00000543091	ENST00000436789		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
5CDS-intron	ENST00000543091	ENST00000429740		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000540415	ENST00000433346		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-3UTR	ENST00000540415	ENST00000449039		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000540415	ENST00000007969		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000540415	ENST00000323702		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000540415	ENST00000443597		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-5UTR	ENST00000540415	ENST00000436789		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
intron-intron	ENST00000540415	ENST00000429740		TCGA	RV	TGCT	TCGA-S6-A8JY-01A	LRP6	chr12	12397196	-	LRRC23	chr12	7014749	+
In-frame	ENST00000355029	ENST00000535829		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
Frame-shit	ENST00000355029	ENST00000357529		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
5CDS-3UTR	ENST00000355029	ENST00000299673		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
5CDS-3UTR	ENST00000355029	ENST00000538135		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000542715	ENST00000535829		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000542715	ENST00000357529		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000542715	ENST00000299673		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000542715	ENST00000538135		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000380359	ENST00000535829		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000380359	ENST00000357529		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000380359	ENST00000299673		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000380359	ENST00000538135		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000484741	ENST00000535829		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000484741	ENST00000357529		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000484741	ENST00000299673		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000484741	ENST00000538135		TCGA	RV	TGCT	TCGA-YU-A94I-01A	NET1	chr10	5471192	+	RIMKLB	chr12	8925917	+
Frame-shit	ENST00000373825	ENST00000004921		TCGA	RV	TGCT	TCGA-SB-A6J6-01A	SRPK1	chr6	35888245	-	CCL18	chr17	34397807	+
5UTR-3CDS	ENST00000423325	ENST00000004921		TCGA	RV	TGCT	TCGA-SB-A6J6-01A	SRPK1	chr6	35888245	-	CCL18	chr17	34397807	+
5UTR-3CDS	ENST00000373822	ENST00000004921		TCGA	RV	TGCT	TCGA-SB-A6J6-01A	SRPK1	chr6	35888245	-	CCL18	chr17	34397807	+
intron-3CDS	ENST00000373821	ENST00000004921		TCGA	RV	TGCT	TCGA-SB-A6J6-01A	SRPK1	chr6	35888245	-	CCL18	chr17	34397807	+
5UTR-5UTR	ENST00000545334	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000537927	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000318304	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000535047	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000542629	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
5UTR-5UTR	ENST00000228425	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
3UTR-5UTR	ENST00000541633	ENST00000256958		TCGA	RV	TGCT	TCGA-2G-AAKH-01A	PPFIBP1	chr12	27677298	+	SLCO1B1	chr12	21294448	+
intron-3CDS	ENST00000381916	ENST00000296350		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-intron	ENST00000381916	ENST00000296351		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
5UTR-3CDS	ENST00000333602	ENST00000296350		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
5UTR-intron	ENST00000333602	ENST00000296351		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-3CDS	ENST00000428187	ENST00000296350		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-intron	ENST00000428187	ENST00000296351		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-3CDS	ENST00000392400	ENST00000296350		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-intron	ENST00000392400	ENST00000296351		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-3CDS	ENST00000316664	ENST00000296350		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-intron	ENST00000316664	ENST00000296351		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-3CDS	ENST00000468819	ENST00000296350		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
intron-intron	ENST00000468819	ENST00000296351		TCGA	RV	TGCT	TCGA-XE-A8H4-01A	TNK2	chr3	195635356	-	MFI2	chr3	196737665	-
5CDS-intron	ENST00000304636	ENST00000270189		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000429089		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000220809		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000352041		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000519510		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000429710		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000304636	ENST00000524009		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000270189		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000429089		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000220809		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000352041		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000519510		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000429710		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
5CDS-intron	ENST00000317840	ENST00000524009		TCGA	RV	TGCT	TCGA-2G-AALZ-01A	COL3A1	chr2	189877472	+	PLAT	chr8	42051245	-
In-frame	ENST00000309311	ENST00000369002		TCGA	RV	TGCT	TCGA-XE-AAO3-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000309311	ENST00000460009		TCGA	RV	TGCT	TCGA-XE-AAO3-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000600720	ENST00000369002		TCGA	RV	TGCT	TCGA-XE-AAO3-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
intron-intron	ENST00000600720	ENST00000460009		TCGA	RV	TGCT	TCGA-XE-AAO3-01A	EEF2	chr19	3976055	-	SEC63	chr6	108214782	-
5UTR-intron	ENST00000438125	ENST00000425256		TCGA	LD	TGCT	TCGA-2G-AAFM-01A	TYW1B	chr7	72178579	-	GTF2IRD2P1	chr7	72694143	-
5CDS-intron	ENST00000435769	ENST00000425256		TCGA	LD	TGCT	TCGA-2G-AAFM-01A	TYW1B	chr7	72178579	-	GTF2IRD2P1	chr7	72694143	-
5CDS-intron	ENST00000343721	ENST00000425256		TCGA	LD	TGCT	TCGA-2G-AAFM-01A	TYW1B	chr7	72178579	-	GTF2IRD2P1	chr7	72694143	-
intron-intron	ENST00000438904	ENST00000425256		TCGA	LD	TGCT	TCGA-2G-AAFM-01A	TYW1B	chr7	72178579	-	GTF2IRD2P1	chr7	72694143	-
5CDS-5UTR	ENST00000406775	ENST00000341724		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000406775	ENST00000372004		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000406775	ENST00000371998		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000406775	ENST00000371997		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000406775	ENST00000497292		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000342771	ENST00000341724		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000342771	ENST00000372004		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000342771	ENST00000371998		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-5UTR	ENST00000342771	ENST00000371997		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5CDS-intron	ENST00000342771	ENST00000497292		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000403018	ENST00000341724		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000403018	ENST00000372004		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000403018	ENST00000371998		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
intron-5UTR	ENST00000403018	ENST00000371997		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
intron-intron	ENST00000403018	ENST00000497292		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
3UTR-5UTR	ENST00000489774	ENST00000341724		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
3UTR-5UTR	ENST00000489774	ENST00000372004		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
3UTR-5UTR	ENST00000489774	ENST00000371998		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
3UTR-5UTR	ENST00000489774	ENST00000371997		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
3UTR-intron	ENST00000489774	ENST00000497292		TCGA	LD	TGCT	TCGA-2G-AAFV-01A	AUTS2	chr7	70163606	+	NCOA3	chr20	46211927	+
5UTR-3CDS	ENST00000398958	ENST00000367384		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000398958	ENST00000367378		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000398958	ENST00000464889		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000398958	ENST00000367380		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000398958	ENST00000544496		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-intron	ENST00000398958	ENST00000480010		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000373833	ENST00000367384		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000373833	ENST00000367378		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000373833	ENST00000464889		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000373833	ENST00000367380		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-3CDS	ENST00000373833	ENST00000544496		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
5UTR-intron	ENST00000373833	ENST00000480010		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373832	ENST00000367384		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373832	ENST00000367378		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373832	ENST00000464889		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373832	ENST00000367380		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373832	ENST00000544496		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000373832	ENST00000480010		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373831	ENST00000367384		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373831	ENST00000367378		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373831	ENST00000464889		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373831	ENST00000367380		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000373831	ENST00000544496		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000373831	ENST00000480010		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000429051	ENST00000367384		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000429051	ENST00000367378		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000429051	ENST00000464889		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000429051	ENST00000367380		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-3CDS	ENST00000429051	ENST00000544496		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000429051	ENST00000480010		TCGA	LD	TGCT	TCGA-2G-AAG0-01A	RCC1	chr1	28834672	+	PCMT1	chr6	150111090	+
intron-intron	ENST00000469100	ENST00000341885		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
intron-intron	ENST00000469100	ENST00000468695		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
intron-intron	ENST00000469100	ENST00000492007		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
intron-intron	ENST00000469100	ENST00000373501		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
5CDS-intron	ENST00000373477	ENST00000341885		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
5CDS-intron	ENST00000373477	ENST00000468695		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
5CDS-intron	ENST00000373477	ENST00000492007		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
5CDS-intron	ENST00000373477	ENST00000373501		TCGA	LD	TGCT	TCGA-2G-AAG8-01A	YARS	chr1	33256763	-	ZBTB8OS	chr1	33097480	-
5CDS-intron	ENST00000262241	ENST00000245046		TCGA	LD	TGCT	TCGA-2G-AAGC-01A	RCOR1	chr14	103059662	+	EMC3	chr3	10023417	-
5CDS-intron	ENST00000262241	ENST00000497557		TCGA	LD	TGCT	TCGA-2G-AAGC-01A	RCOR1	chr14	103059662	+	EMC3	chr3	10023417	-
5CDS-intron	ENST00000262241	ENST00000429759		TCGA	LD	TGCT	TCGA-2G-AAGC-01A	RCOR1	chr14	103059662	+	EMC3	chr3	10023417	-
5CDS-intron	ENST00000570597	ENST00000245046		TCGA	LD	TGCT	TCGA-2G-AAGC-01A	RCOR1	chr14	103059662	+	EMC3	chr3	10023417	-
5CDS-intron	ENST00000570597	ENST00000497557		TCGA	LD	TGCT	TCGA-2G-AAGC-01A	RCOR1	chr14	103059662	+	EMC3	chr3	10023417	-
5CDS-intron	ENST00000570597	ENST00000429759		TCGA	LD	TGCT	TCGA-2G-AAGC-01A	RCOR1	chr14	103059662	+	EMC3	chr3	10023417	-
intron-3CDS	ENST00000383777	ENST00000321169		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000383777	ENST00000435217		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000383777	ENST00000451445		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000383777	ENST00000456194		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000383777	ENST00000457447		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
In-frame	ENST00000399451	ENST00000321169		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
In-frame	ENST00000399451	ENST00000435217		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
In-frame	ENST00000399451	ENST00000451445		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
In-frame	ENST00000399451	ENST00000456194		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
In-frame	ENST00000399451	ENST00000457447		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000497037	ENST00000321169		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000497037	ENST00000435217		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000497037	ENST00000451445		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000497037	ENST00000456194		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
intron-3CDS	ENST00000497037	ENST00000457447		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	ANKRD28	chr3	15900884	-	HACL1	chr3	15610093	-
5CDS-5UTR	ENST00000381470	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000381470	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000381470	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000381470	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000381470	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000381470	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000432128	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000432128	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000432128	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000432128	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000432128	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000432128	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000443491	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000443491	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000443491	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000443491	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000443491	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000443491	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000517600	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000517600	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000517600	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000517600	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000517600	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000517600	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523782	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523782	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523782	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000523782	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523782	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523782	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000265800	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000265800	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000265800	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000265800	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000265800	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000265800	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000415253	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000415253	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000415253	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000415253	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000415253	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000415253	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000358242	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000358242	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000358242	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000358242	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000358242	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000358242	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523266	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523266	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523266	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000523266	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523266	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000523266	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000519907	ENST00000521157		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000519907	ENST00000397940		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000519907	ENST00000518119		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-intron	ENST00000519907	ENST00000520180		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000519907	ENST00000289820		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
5CDS-5UTR	ENST00000519907	ENST00000381530		TCGA	LD	TGCT	TCGA-2G-AAGG-01A	DMTN	chr8	21931346	+	NPM2	chr8	21882727	+
intron-3CDS	ENST00000342234	ENST00000390239		TCGA	LD	TGCT	TCGA-2G-AAGJ-01A	SP6	chr17	45924405	-	IGKJ4	chr2	89160432	-
intron-3CDS	ENST00000536300	ENST00000390239		TCGA	LD	TGCT	TCGA-2G-AAGJ-01A	SP6	chr17	45924405	-	IGKJ4	chr2	89160432	-
5CDS-5UTR	ENST00000378609	ENST00000535112		TCGA	LD	TGCT	TCGA-2G-AAGP-01A	GNB1	chr1	1756836	-	LDHB	chr12	21807611	-
5CDS-5UTR	ENST00000378609	ENST00000396076		TCGA	LD	TGCT	TCGA-2G-AAGP-01A	GNB1	chr1	1756836	-	LDHB	chr12	21807611	-
5CDS-5UTR	ENST00000378609	ENST00000350669		TCGA	LD	TGCT	TCGA-2G-AAGP-01A	GNB1	chr1	1756836	-	LDHB	chr12	21807611	-
intron-5UTR	ENST00000472614	ENST00000535112		TCGA	LD	TGCT	TCGA-2G-AAGP-01A	GNB1	chr1	1756836	-	LDHB	chr12	21807611	-
intron-5UTR	ENST00000472614	ENST00000396076		TCGA	LD	TGCT	TCGA-2G-AAGP-01A	GNB1	chr1	1756836	-	LDHB	chr12	21807611	-
intron-5UTR	ENST00000472614	ENST00000350669		TCGA	LD	TGCT	TCGA-2G-AAGP-01A	GNB1	chr1	1756836	-	LDHB	chr12	21807611	-
5CDS-5UTR	ENST00000394140	ENST00000383693		TCGA	LD	TGCT	TCGA-2G-AAGT-01A	NIT2	chr3	100060005	+	LNP1	chr3	100148541	+
5CDS-5UTR	ENST00000394140	ENST00000489752		TCGA	LD	TGCT	TCGA-2G-AAGT-01A	NIT2	chr3	100060005	+	LNP1	chr3	100148541	+
In-frame	ENST00000230419	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000230419	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000349241	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000349241	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000345201	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000345201	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000352931	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000352931	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
intron-3CDS	ENST00000481273	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
intron-3CDS	ENST00000481273	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000476760	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000476760	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000471863	ENST00000265354		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000471863	ENST00000457278		TCGA	LD	TGCT	TCGA-2G-AAGZ-01A	PTK7	chr6	43044305	+	SRF	chr6	43146544	+
In-frame	ENST00000258111	ENST00000229195		TCGA	LD	TGCT	TCGA-2G-AAH0-01A	KCNMB4	chr12	70760850	+	CNOT2	chr12	70737908	+
In-frame	ENST00000258111	ENST00000418359		TCGA	LD	TGCT	TCGA-2G-AAH0-01A	KCNMB4	chr12	70760850	+	CNOT2	chr12	70737908	+
5CDS-intron	ENST00000258111	ENST00000548230		TCGA	LD	TGCT	TCGA-2G-AAH0-01A	KCNMB4	chr12	70760850	+	CNOT2	chr12	70737908	+
5CDS-intron	ENST00000258111	ENST00000551483		TCGA	LD	TGCT	TCGA-2G-AAH0-01A	KCNMB4	chr12	70760850	+	CNOT2	chr12	70737908	+
3UTR-3CDS	ENST00000474284	ENST00000421999		TCGA	LD	TGCT	TCGA-2G-AAH3-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
3UTR-intron	ENST00000474284	ENST00000496116		TCGA	LD	TGCT	TCGA-2G-AAH3-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
3UTR-intron	ENST00000474284	ENST00000489081		TCGA	LD	TGCT	TCGA-2G-AAH3-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
Frame-shit	ENST00000418063	ENST00000421999		TCGA	LD	TGCT	TCGA-2G-AAH3-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000418063	ENST00000496116		TCGA	LD	TGCT	TCGA-2G-AAH3-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000418063	ENST00000489081		TCGA	LD	TGCT	TCGA-2G-AAH3-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
5CDS-5UTR	ENST00000285737	ENST00000404460		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-intron	ENST00000285737	ENST00000303908		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000409158		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000403716		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000234115		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000439822		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-intron	ENST00000285737	ENST00000487980		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000438882		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-intron	ENST00000285737	ENST00000538982		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000409612		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000285737	ENST00000409279		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000404460		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-intron	ENST00000535754	ENST00000303908		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000409158		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000403716		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000234115		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000439822		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-intron	ENST00000535754	ENST00000487980		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000438882		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-intron	ENST00000535754	ENST00000538982		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000409612		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
5CDS-5UTR	ENST00000535754	ENST00000409279		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000404460		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-intron	ENST00000564259	ENST00000303908		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000409158		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000403716		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000234115		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000439822		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-intron	ENST00000564259	ENST00000487980		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000438882		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-intron	ENST00000564259	ENST00000538982		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000409612		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
intron-5UTR	ENST00000564259	ENST00000409279		TCGA	LD	TGCT	TCGA-2G-AAH8-01A	LONP2	chr16	48337216	+	PLEKHB2	chr2	131878507	+
3UTR-3CDS	ENST00000474284	ENST00000421999		TCGA	LD	TGCT	TCGA-2G-AAKL-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
3UTR-intron	ENST00000474284	ENST00000496116		TCGA	LD	TGCT	TCGA-2G-AAKL-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
3UTR-intron	ENST00000474284	ENST00000489081		TCGA	LD	TGCT	TCGA-2G-AAKL-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
Frame-shit	ENST00000418063	ENST00000421999		TCGA	LD	TGCT	TCGA-2G-AAKL-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000418063	ENST00000496116		TCGA	LD	TGCT	TCGA-2G-AAKL-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
5CDS-intron	ENST00000418063	ENST00000489081		TCGA	LD	TGCT	TCGA-2G-AAKL-01A	ZNF90	chr19	20188944	+	CMSS1	chr3	99865817	+
5CDS-5UTR	ENST00000370370	ENST00000370367		TCGA	LD	TGCT	TCGA-2G-AAKM-01A	DPPA5	chr6	74063576	-	KHDC3L	chr6	74072440	+
In-frame	ENST00000341776	ENST00000321265		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
5CDS-intron	ENST00000341776	ENST00000484772		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
intron-3CDS	ENST00000397311	ENST00000321265		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
intron-intron	ENST00000397311	ENST00000484772		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
intron-3CDS	ENST00000541660	ENST00000321265		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
intron-intron	ENST00000541660	ENST00000484772		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
intron-3CDS	ENST00000474854	ENST00000321265		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
intron-intron	ENST00000474854	ENST00000484772		TCGA	LD	TGCT	TCGA-2G-AAL7-01A	JARID2	chr6	15246815	+	NUDC	chr1	27250580	+
5CDS-intron	ENST00000261461	ENST00000366933		TCGA	LD	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040220	+
5CDS-3UTR	ENST00000261461	ENST00000471021		TCGA	LD	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040220	+
5CDS-intron	ENST00000537030	ENST00000366933		TCGA	LD	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040220	+
5CDS-3UTR	ENST00000537030	ENST00000471021		TCGA	LD	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040220	+
intron-intron	ENST00000498129	ENST00000366933		TCGA	LD	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040220	+
intron-3UTR	ENST00000498129	ENST00000471021		TCGA	LD	TGCT	TCGA-2G-AALF-01A	PPP2R5A	chr1	212522584	+	SPATA17	chr1	218040220	+
In-frame	ENST00000404233	ENST00000401088		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
In-frame	ENST00000404233	ENST00000471507		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000404233	ENST00000401089		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000404233	ENST00000375590		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000404233	ENST00000492354		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-3UTR	ENST00000404233	ENST00000472461		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
In-frame	ENST00000529972	ENST00000401088		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
In-frame	ENST00000529972	ENST00000471507		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000529972	ENST00000401089		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000529972	ENST00000375590		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000529972	ENST00000492354		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-3UTR	ENST00000529972	ENST00000472461		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
Frame-shit	ENST00000525859	ENST00000401088		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
Frame-shit	ENST00000525859	ENST00000471507		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000525859	ENST00000401089		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000525859	ENST00000375590		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000525859	ENST00000492354		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-3UTR	ENST00000525859	ENST00000472461		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
Frame-shit	ENST00000543287	ENST00000401088		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
Frame-shit	ENST00000543287	ENST00000471507		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000543287	ENST00000401089		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000543287	ENST00000375590		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-intron	ENST00000543287	ENST00000492354		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
5CDS-3UTR	ENST00000543287	ENST00000472461		TCGA	LD	TGCT	TCGA-2G-AALN-01A	HYOU1	chr11	118922150	-	SZRD1	chr1	16717870	+
In-frame	ENST00000279387	ENST00000357402		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
5CDS-intron	ENST00000279387	ENST00000452209		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
5CDS-intron	ENST00000279387	ENST00000395353		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
5CDS-intron	ENST00000279387	ENST00000566554		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
In-frame	ENST00000561610	ENST00000357402		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
5CDS-intron	ENST00000561610	ENST00000452209		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
5CDS-intron	ENST00000561610	ENST00000395353		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
5CDS-intron	ENST00000561610	ENST00000566554		TCGA	LD	TGCT	TCGA-2G-AALY-01A	PPP4C	chr16	30087796	+	MVP	chr16	29855814	+
intron-3UTR	ENST00000375771	ENST00000480945		TCGA	LD	TGCT	TCGA-2G-AAM2-01A	FBLIM1	chr1	16085343	+	DDI2	chr1	15986332	+
5UTR-3UTR	ENST00000375766	ENST00000480945		TCGA	LD	TGCT	TCGA-2G-AAM2-01A	FBLIM1	chr1	16085343	+	DDI2	chr1	15986332	+
5UTR-3UTR	ENST00000400773	ENST00000480945		TCGA	LD	TGCT	TCGA-2G-AAM2-01A	FBLIM1	chr1	16085343	+	DDI2	chr1	15986332	+
intron-3UTR	ENST00000441801	ENST00000480945		TCGA	LD	TGCT	TCGA-2G-AAM2-01A	FBLIM1	chr1	16085343	+	DDI2	chr1	15986332	+
intron-3UTR	ENST00000332305	ENST00000480945		TCGA	LD	TGCT	TCGA-2G-AAM2-01A	FBLIM1	chr1	16085343	+	DDI2	chr1	15986332	+
intron-3UTR	ENST00000509138	ENST00000480945		TCGA	LD	TGCT	TCGA-2G-AAM2-01A	FBLIM1	chr1	16085343	+	DDI2	chr1	15986332	+
5CDS-5UTR	ENST00000395996	ENST00000216223		TCGA	LD	TGCT	TCGA-2G-AAM4-01A	VPS13B	chr8	100050794	+	IL2RB	chr22	37540245	-
5CDS-5UTR	ENST00000358544	ENST00000216223		TCGA	LD	TGCT	TCGA-2G-AAM4-01A	VPS13B	chr8	100050794	+	IL2RB	chr22	37540245	-
5CDS-5UTR	ENST00000357162	ENST00000216223		TCGA	LD	TGCT	TCGA-2G-AAM4-01A	VPS13B	chr8	100050794	+	IL2RB	chr22	37540245	-
5CDS-5UTR	ENST00000355155	ENST00000216223		TCGA	LD	TGCT	TCGA-2G-AAM4-01A	VPS13B	chr8	100050794	+	IL2RB	chr22	37540245	-
5CDS-5UTR	ENST00000441350	ENST00000216223		TCGA	LD	TGCT	TCGA-2G-AAM4-01A	VPS13B	chr8	100050794	+	IL2RB	chr22	37540245	-
intron-5UTR	ENST00000521932	ENST00000216223		TCGA	LD	TGCT	TCGA-2G-AAM4-01A	VPS13B	chr8	100050794	+	IL2RB	chr22	37540245	-
Frame-shit	ENST00000216037	ENST00000397906		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
5CDS-intron	ENST00000216037	ENST00000490475		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
Frame-shit	ENST00000403532	ENST00000397906		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
5CDS-intron	ENST00000403532	ENST00000490475		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
Frame-shit	ENST00000405219	ENST00000397906		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
5CDS-intron	ENST00000405219	ENST00000490475		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
In-frame	ENST00000344347	ENST00000397906		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
5CDS-intron	ENST00000344347	ENST00000490475		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	XBP1	chr22	29192035	-	TTC28	chr22	28559587	-
intron-3CDS	ENST00000268616	ENST00000461719		TCGA	LD	TGCT	TCGA-2X-A9D6-01A	ZCCHC14	chr16	87451319	-	IGHJ4	chr14	106330464	-
In-frame	ENST00000216037	ENST00000397906		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
5CDS-intron	ENST00000216037	ENST00000490475		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
intron-3CDS	ENST00000403532	ENST00000397906		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
intron-intron	ENST00000403532	ENST00000490475		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
In-frame	ENST00000405219	ENST00000397906		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
5CDS-intron	ENST00000405219	ENST00000490475		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
In-frame	ENST00000344347	ENST00000397906		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
5CDS-intron	ENST00000344347	ENST00000490475		TCGA	LD	TGCT	TCGA-4K-AAAL-01A	XBP1	chr22	29195045	-	TTC28	chr22	29025818	-
intron-3CDS	ENST00000265318	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000404537	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000373876	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000265317	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000603926	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000373873	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000289656	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
intron-3CDS	ENST00000491370	ENST00000390564		TCGA	LD	TGCT	TCGA-SB-A6J6-01A	OBSL1	chr2	220435796	-	IGHJ2	chr14	106331458	-
5CDS-5UTR	ENST00000397170	ENST00000436517		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-3UTR	ENST00000397170	ENST00000524279		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-intron	ENST00000397170	ENST00000450660		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-5UTR	ENST00000383811	ENST00000436517		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-3UTR	ENST00000383811	ENST00000524279		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-intron	ENST00000383811	ENST00000450660		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-5UTR	ENST00000452070	ENST00000436517		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-3UTR	ENST00000452070	ENST00000524279		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-intron	ENST00000452070	ENST00000450660		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-5UTR	ENST00000326434	ENST00000436517		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-3UTR	ENST00000326434	ENST00000524279		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5CDS-intron	ENST00000326434	ENST00000450660		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
intron-5UTR	ENST00000489674	ENST00000436517		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
intron-3UTR	ENST00000489674	ENST00000524279		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
intron-intron	ENST00000489674	ENST00000450660		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	CRELD1	chr3	9979790	+	FANCD2OS	chr3	10123215	-
5UTR-3CDS	ENST00000450651	ENST00000215727		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	PI4KAP2	chr22	21841854	-	SERPIND1	chr22	21141163	+
5UTR-3CDS	ENST00000450651	ENST00000406799		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	PI4KAP2	chr22	21841854	-	SERPIND1	chr22	21141163	+
In-frame	ENST00000490103	ENST00000397906		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
5CDS-5UTR	ENST00000490103	ENST00000490475		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
Frame-shit	ENST00000397871	ENST00000397906		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
5CDS-5UTR	ENST00000397871	ENST00000490475		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
In-frame	ENST00000397872	ENST00000397906		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
5CDS-5UTR	ENST00000397872	ENST00000490475		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
Frame-shit	ENST00000397873	ENST00000397906		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
5CDS-5UTR	ENST00000397873	ENST00000490475		TCGA	LD	TGCT	TCGA-SN-A6IS-01A	THOC5	chr22	29945041	-	TTC28	chr22	28702631	-
In-frame	ENST00000508628	ENST00000378230		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
5CDS-intron	ENST00000508628	ENST00000460038		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
5CDS-intron	ENST00000508628	ENST00000378223		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-3CDS	ENST00000456466	ENST00000378230		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-intron	ENST00000456466	ENST00000460038		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-intron	ENST00000456466	ENST00000378223		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
In-frame	ENST00000582970	ENST00000378230		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
5CDS-intron	ENST00000582970	ENST00000460038		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
5CDS-intron	ENST00000582970	ENST00000378223		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-3CDS	ENST00000319921	ENST00000378230		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-intron	ENST00000319921	ENST00000460038		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-intron	ENST00000319921	ENST00000378223		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
In-frame	ENST00000336301	ENST00000378230		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
5CDS-intron	ENST00000336301	ENST00000460038		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
5CDS-intron	ENST00000336301	ENST00000378223		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-3CDS	ENST00000427003	ENST00000378230		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-intron	ENST00000427003	ENST00000460038		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
intron-intron	ENST00000427003	ENST00000378223		TCGA	LD	TGCT	TCGA-VF-A8AE-01A	RNF213	chr17	78337114	+	CEP104	chr1	3732934	-
In-frame	ENST00000540857	ENST00000545145		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000540857	ENST00000392561		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000540857	ENST00000261741		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
5CDS-intron	ENST00000540857	ENST00000553232		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000539221	ENST00000545145		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000539221	ENST00000392561		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000539221	ENST00000261741		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
5CDS-intron	ENST00000539221	ENST00000553232		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000301790	ENST00000545145		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000301790	ENST00000392561		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
In-frame	ENST00000301790	ENST00000261741		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
5CDS-intron	ENST00000301790	ENST00000553232		TCGA	LD	TGCT	TCGA-WZ-A7V3-01A	HRASLS5	chr11	63256343	-	RBM19	chr12	114261126	-
intron-3CDS	ENST00000357485	ENST00000461719		TCGA	LD	TGCT	TCGA-WZ-A7V5-01A	ARID5A	chr2	97203189	+	IGHJ4	chr14	106330466	-
5UTR-3CDS	ENST00000454558	ENST00000461719		TCGA	LD	TGCT	TCGA-WZ-A7V5-01A	ARID5A	chr2	97203189	+	IGHJ4	chr14	106330466	-
In-frame	ENST00000258796	ENST00000360876		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
In-frame	ENST00000258796	ENST00000397011		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
In-frame	ENST00000407643	ENST00000360876		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
In-frame	ENST00000407643	ENST00000397011		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
intron-3CDS	ENST00000403167	ENST00000360876		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
intron-3CDS	ENST00000403167	ENST00000397011		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
intron-3CDS	ENST00000477439	ENST00000360876		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
intron-3CDS	ENST00000477439	ENST00000397011		TCGA	LD	TGCT	TCGA-WZ-A8D5-01A	TTYH3	chr7	2671912	+	EIF3B	chr7	2418324	+
5CDS-3UTR	ENST00000541515	ENST00000557932		TCGA	LD	TGCT	TCGA-X3-A8G4-01A	LUC7L2	chr7	139094400	+	WASH3P	chr15	102506273	+
5CDS-intron	ENST00000253079	ENST00000450485		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000253079	ENST00000333479		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000253079	ENST00000545065		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000253079	ENST00000537348		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000253079	ENST00000436959		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000253079	ENST00000534995		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000392441	ENST00000450485		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000392441	ENST00000333479		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000392441	ENST00000545065		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000392441	ENST00000537348		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000392441	ENST00000436959		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5CDS-intron	ENST00000392441	ENST00000534995		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5UTR-intron	ENST00000537566	ENST00000450485		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5UTR-intron	ENST00000537566	ENST00000333479		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5UTR-intron	ENST00000537566	ENST00000545065		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5UTR-intron	ENST00000537566	ENST00000537348		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5UTR-intron	ENST00000537566	ENST00000436959		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
5UTR-intron	ENST00000537566	ENST00000534995		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-intron	ENST00000392440	ENST00000450485		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-intron	ENST00000392440	ENST00000333479		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-intron	ENST00000392440	ENST00000545065		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-intron	ENST00000392440	ENST00000537348		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-intron	ENST00000392440	ENST00000436959		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-intron	ENST00000392440	ENST00000534995		TCGA	LD	TGCT	TCGA-XE-A8H5-01A	CCDC62	chr12	123262230	+	KNTC1	chr12	123086083	+
intron-5UTR	ENST00000383737	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000383737	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000395734	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000395734	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000426837	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000426837	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000360240	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
5CDS-5UTR	ENST00000360240	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000439356	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000439356	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000264724	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000264724	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000420772	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000420772	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000441748	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000441748	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000462206	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000462206	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000434267	ENST00000278550		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
intron-5UTR	ENST00000434267	ENST00000533038		TCGA	LD	TGCT	TCGA-XE-AANJ-01A	MAP4	chr3	47956307	-	TENM4	chr11	78781054	-
In-frame	ENST00000371941	ENST00000371828		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
In-frame	ENST00000371941	ENST00000371802		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
In-frame	ENST00000371941	ENST00000371856		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
In-frame	ENST00000371941	ENST00000347458		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
In-frame	ENST00000371941	ENST00000340954		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
In-frame	ENST00000371941	ENST00000371792		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
In-frame	ENST00000371941	ENST00000360426		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000371828		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000371802		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000371856		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000347458		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000340954		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000371792		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
3UTR-3CDS	ENST00000396220	ENST00000360426		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000371828		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000371802		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000371856		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000347458		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000340954		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000371792		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
intron-3CDS	ENST00000496915	ENST00000360426		TCGA	LD	TGCT	TCGA-XY-A89B-01A	PREX1	chr20	47244086	-	STAU1	chr20	47768284	-
Frame-shit	ENST00000360403	ENST00000456518		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000397174		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000402904		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000361191		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000397171		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000361705		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000326197		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000372595		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000337495		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000372596		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000360403	ENST00000372597		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5CDS-intron	ENST00000360403	ENST00000472037		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000456518		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000397174		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000402904		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000361191		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000397171		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000361705		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000326197		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000372595		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000337495		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000372596		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
Frame-shit	ENST00000372183	ENST00000372597		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5CDS-intron	ENST00000372183	ENST00000472037		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000456518		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000397174		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000402904		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000361191		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000397171		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000361705		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000326197		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000372595		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000337495		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000372596		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-3CDS	ENST00000480675	ENST00000372597		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5UTR-intron	ENST00000480675	ENST00000472037		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	EIF2B3	chr1	45392300	-	SCMH1	chr1	41514562	-
5CDS-intron	ENST00000372572	ENST00000372583		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372572	ENST00000372584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372572	ENST00000247584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372572	ENST00000429157		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372572	ENST00000460604		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372573	ENST00000372583		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372573	ENST00000372584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372573	ENST00000247584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372573	ENST00000429157		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000372573	ENST00000460604		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361346	ENST00000372583		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361346	ENST00000372584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361346	ENST00000247584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361346	ENST00000429157		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361346	ENST00000460604		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361776	ENST00000372583		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361776	ENST00000372584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361776	ENST00000247584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361776	ENST00000429157		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000361776	ENST00000460604		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000545068	ENST00000372583		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000545068	ENST00000372584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000545068	ENST00000247584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000545068	ENST00000429157		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
5CDS-intron	ENST00000545068	ENST00000460604		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
intron-intron	ENST00000372571	ENST00000372583		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
intron-intron	ENST00000372571	ENST00000372584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
intron-intron	ENST00000372571	ENST00000247584		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
intron-intron	ENST00000372571	ENST00000429157		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
intron-intron	ENST00000372571	ENST00000460604		TCGA	LD	TGCT	TCGA-XY-A8S2-01A	FOXJ3	chr1	42776721	-	HIVEP3	chr1	42314706	-
In-frame	ENST00000360605	ENST00000382148		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000360605	ENST00000447367		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000360605	ENST00000382150		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000360605	ENST00000382152		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000360605	ENST00000509207		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000360605	ENST00000382149		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000360605	ENST00000359001		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000542441	ENST00000382148		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000542441	ENST00000447367		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000542441	ENST00000382150		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000542441	ENST00000382152		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000542441	ENST00000509207		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000542441	ENST00000382149		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000542441	ENST00000359001		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000392271	ENST00000382148		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000392271	ENST00000447367		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000392271	ENST00000382150		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000392271	ENST00000382152		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000392271	ENST00000509207		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000392271	ENST00000382149		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000392271	ENST00000359001		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000312051	ENST00000382148		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000312051	ENST00000447367		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000312051	ENST00000382150		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
In-frame	ENST00000312051	ENST00000382152		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000312051	ENST00000509207		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000312051	ENST00000382149		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000312051	ENST00000359001		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000574176	ENST00000382148		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000574176	ENST00000447367		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000574176	ENST00000382150		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-3CDS	ENST00000574176	ENST00000382152		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000574176	ENST00000509207		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000574176	ENST00000382149		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
intron-5UTR	ENST00000574176	ENST00000359001		TCGA	LD	TGCT	TCGA-YU-A90P-01A	URI1	chr19	30477324	+	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000534526	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5CDS-3UTR	ENST00000534526	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
Frame-shit	ENST00000531134	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5CDS-3UTR	ENST00000531134	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
Frame-shit	ENST00000427716	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5CDS-3UTR	ENST00000427716	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5UTR-3CDS	ENST00000266482	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5UTR-3UTR	ENST00000266482	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
Frame-shit	ENST00000546442	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5CDS-3UTR	ENST00000546442	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
Frame-shit	ENST00000525053	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5CDS-3UTR	ENST00000525053	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5UTR-3CDS	ENST00000381025	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5UTR-3UTR	ENST00000381025	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
intron-3CDS	ENST00000472289	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
intron-3UTR	ENST00000472289	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
intron-3CDS	ENST00000473513	ENST00000312561		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
intron-3UTR	ENST00000473513	ENST00000535596		TCGA	LD	TGCT	TCGA-YU-A90Y-01A	FGD4	chr12	32751520	+	KIAA1551	chr12	32140173	+
5CDS-5UTR	ENST00000368874	ENST00000439374		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368874	ENST00000540998		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368874	ENST00000357235		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368874	ENST00000492796		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000271657	ENST00000439374		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000271657	ENST00000540998		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000271657	ENST00000357235		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000271657	ENST00000492796		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000368875	ENST00000439374		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368875	ENST00000540998		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368875	ENST00000357235		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368875	ENST00000492796		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000368873	ENST00000439374		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368873	ENST00000540998		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368873	ENST00000357235		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368873	ENST00000492796		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000529142	ENST00000439374		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000529142	ENST00000540998		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000529142	ENST00000357235		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000529142	ENST00000492796		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000368872	ENST00000439374		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368872	ENST00000540998		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368872	ENST00000357235		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-intron	ENST00000368872	ENST00000492796		TCGA	LD	TGCT	TCGA-YU-A94I-01A	PI4KB	chr1	151276017	-	CDC42SE1	chr1	151032249	-
5CDS-5UTR	ENST00000296043	ENST00000341029		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000296043	ENST00000355810		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
5CDS-5UTR	ENST00000296043	ENST00000349321		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
5CDS-3UTR	ENST00000296043	ENST00000513494		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
intron-5UTR	ENST00000473602	ENST00000341029		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
intron-5UTR	ENST00000473602	ENST00000355810		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
intron-5UTR	ENST00000473602	ENST00000349321		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
intron-3UTR	ENST00000473602	ENST00000513494		TCGA	LD	TGCT	TCGA-YU-AA61-01A	SHROOM3	chr4	77476916	+	ART3	chr4	76997034	+
In-frame	ENST00000537045	ENST00000608083		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
In-frame	ENST00000537045	ENST00000377855		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000537045	ENST00000545482		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000537045	ENST00000361521		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000537045	ENST00000377842		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000537045	ENST00000377845		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000537045	ENST00000541130		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
In-frame	ENST00000263196	ENST00000608083		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
In-frame	ENST00000263196	ENST00000377855		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000263196	ENST00000545482		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000263196	ENST00000361521		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000263196	ENST00000377842		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000263196	ENST00000377845		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000263196	ENST00000541130		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
Frame-shit	ENST00000545799	ENST00000608083		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
Frame-shit	ENST00000545799	ENST00000377855		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000545799	ENST00000545482		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000545799	ENST00000361521		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000545799	ENST00000377842		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000545799	ENST00000377845		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5CDS-intron	ENST00000545799	ENST00000541130		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-3CDS	ENST00000473832	ENST00000608083		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-3CDS	ENST00000473832	ENST00000377855		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-intron	ENST00000473832	ENST00000545482		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-intron	ENST00000473832	ENST00000361521		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-intron	ENST00000473832	ENST00000377842		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-intron	ENST00000473832	ENST00000377845		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
5UTR-intron	ENST00000473832	ENST00000541130		TCGA	LD	TGCT	TCGA-ZM-AA0B-01A	DGCR2	chr22	19052361	-	ACOT7	chr1	6409926	-
In-frame	ENST00000355413	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
Frame-shit	ENST00000473247	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
3UTR-3CDS	ENST00000495028	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
In-frame	ENST00000535825	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
In-frame	ENST00000492693	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	AGK	chr7	141255367	+	BRAF	chr7	140494267	-
Frame-shit	ENST00000346798	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000346798	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000354192	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000354192	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000348990	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000348990	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000357903	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000357903	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
In-frame	ENST00000358918	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000358918	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
In-frame	ENST00000359726	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000359726	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000448388	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-intron	ENST00000448388	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000440126	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-intron	ENST00000440126	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000439274	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-intron	ENST00000439274	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000474136	ENST00000369002		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
intron-intron	ENST00000474136	ENST00000460009		TCGA	RV	THCA	TCGA-DJ-A13S-01A	APP	chr21	27252862	-	SEC63	chr6	108214782	-
3UTR-intron	ENST00000331595	ENST00000267101		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000331595	ENST00000450146		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000331595	ENST00000415288		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000331595	ENST00000553131		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000331595	ENST00000411731		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
3UTR-intron	ENST00000331595	ENST00000549832		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000480756	ENST00000267101		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000480756	ENST00000450146		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000480756	ENST00000415288		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000480756	ENST00000553131		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000480756	ENST00000411731		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000480756	ENST00000549832		TCGA	RV	THCA	TCGA-ET-A25M-01A	BGN	chrX	152775004	+	ERBB3	chr12	56492035	+
5CDS-5UTR	ENST00000343916	ENST00000228741		TCGA	RV	THCA	TCGA-EM-A1YD-01A	COL9A3	chr20	61472511	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000343916	ENST00000552142		TCGA	RV	THCA	TCGA-EM-A1YD-01A	COL9A3	chr20	61472511	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000343916	ENST00000549529		TCGA	RV	THCA	TCGA-EM-A1YD-01A	COL9A3	chr20	61472511	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000462700	ENST00000228741		TCGA	RV	THCA	TCGA-EM-A1YD-01A	COL9A3	chr20	61472511	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000462700	ENST00000552142		TCGA	RV	THCA	TCGA-EM-A1YD-01A	COL9A3	chr20	61472511	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000462700	ENST00000549529		TCGA	RV	THCA	TCGA-EM-A1YD-01A	COL9A3	chr20	61472511	+	ELK3	chr12	96588323	+
intron-3CDS	ENST00000434271	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000434271	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000434271	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000353047	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000353047	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000353047	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
In-frame	ENST00000530640	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000530640	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000530640	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000531089	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000531089	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000531089	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000453527	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000453527	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000453527	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000415599	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000415599	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000415599	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000345125	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000345125	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000345125	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000533455	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000533455	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000533455	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000534510	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000534510	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000534510	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000525076	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000525076	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000525076	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3V6-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000434271	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000434271	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000434271	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000353047	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000353047	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000353047	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
In-frame	ENST00000530640	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000530640	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000530640	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000531089	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000531089	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000531089	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000453527	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000453527	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000453527	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000415599	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000415599	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000415599	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000345125	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000345125	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000345125	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000533455	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000533455	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000533455	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000534510	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000534510	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000534510	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000525076	ENST00000323963		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000525076	ENST00000440191		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000525076	ENST00000356531		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000434271	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000434271	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000434271	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000353047	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000353047	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000353047	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
In-frame	ENST00000530640	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000530640	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000530640	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000531089	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000531089	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000531089	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000453527	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000453527	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000453527	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000415599	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000415599	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000415599	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000345125	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000345125	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000345125	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000533455	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000533455	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000533455	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000534510	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000534510	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000534510	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-3CDS	ENST00000525076	ENST00000323963		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000525076	ENST00000440191		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
intron-intron	ENST00000525076	ENST00000356531		TCGA	RV	THCA	TCGA-ET-A40Q-01A	CTSB	chr8	11701564	-	EIF4A2	chr3	186501336	+
5CDS-intron	ENST00000373823	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373823	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373823	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373823	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373823	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373808	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373808	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373808	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373808	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373808	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000436847	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000436847	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000436847	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000436847	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000436847	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000449733	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000449733	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000449733	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000449733	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000449733	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000412819	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000412819	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000412819	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000412819	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000412819	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000394353	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000394353	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000394353	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000394353	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000394353	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000341272	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000341272	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000341272	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000341272	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000341272	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000545652	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000545652	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000545652	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000545652	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000545652	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373818	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373818	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373818	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373818	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
5CDS-intron	ENST00000373818	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000485767	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000485767	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000485767	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000485767	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000485767	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373807	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373807	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373807	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373807	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373807	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373806	ENST00000560302		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373806	ENST00000394518		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373806	ENST00000361243		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373806	ENST00000560579		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
intron-intron	ENST00000373806	ENST00000394510		TCGA	RV	THCA	TCGA-E8-A417-01A	GSN	chr9	124095120	+	AKAP13	chr15	86122161	+
3UTR-intron	ENST00000373823	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000373823	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373823	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373823	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373823	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373823	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000373808	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000373808	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373808	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373808	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373808	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373808	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000436847	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000436847	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000436847	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000436847	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000436847	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000436847	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000449733	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000449733	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000449733	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000449733	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000449733	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000449733	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000412819	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000412819	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000412819	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000412819	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000412819	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000412819	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000394353	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000394353	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000394353	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000394353	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000394353	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000394353	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000341272	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000341272	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000341272	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000341272	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000341272	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000341272	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000545652	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000545652	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000545652	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000545652	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000545652	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000545652	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000373818	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-intron	ENST00000373818	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373818	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373818	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373818	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373818	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000485767	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000485767	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000485767	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000485767	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000485767	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000485767	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000373807	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000373807	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373807	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373807	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373807	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373807	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000373806	ENST00000471014		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-intron	ENST00000373806	ENST00000405570		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373806	ENST00000396183		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373806	ENST00000349496		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373806	ENST00000453024		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
intron-5UTR	ENST00000373806	ENST00000396185		TCGA	RV	THCA	TCGA-EL-A3CN-01A	GSN	chr9	124095016	+	CTNNB1	chr3	41240996	+
3UTR-5UTR	ENST00000373823	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000373823	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373823	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000373808	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000373808	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373808	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000436847	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000436847	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000436847	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000449733	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000449733	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000449733	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000412819	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000412819	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000412819	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000394353	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000394353	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000394353	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000341272	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000341272	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000341272	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000545652	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000545652	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000545652	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000373818	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-5UTR	ENST00000373818	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
3UTR-intron	ENST00000373818	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000485767	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000485767	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000485767	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000373807	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000373807	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373807	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000373806	ENST00000418931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-5UTR	ENST00000373806	ENST00000535465		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000471184		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000411749		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000441981		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000474044		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000550949		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000383102		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000441857		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000551599		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000548608		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000492916		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000454006		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000411424		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000548235		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000472101		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000425130		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000411558		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000481615		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000553195		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000399500		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000399491		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000548907		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000469961		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000415996		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000447783		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000548074		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000491972		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000433800		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000444931		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000552574		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
intron-intron	ENST00000373806	ENST00000461155		TCGA	RV	THCA	TCGA-H2-A26U-01A	GSN	chr9	124095016	+	HLA-DPB1	chr6	33043760	+
In-frame	ENST00000355710	ENST00000263102		TCGA	RV	THCA	TCGA-DJ-A4V5-01A	RET	chr10	43610184	+	CCDC6	chr10	61612460	-
In-frame	ENST00000340058	ENST00000263102		TCGA	RV	THCA	TCGA-DJ-A4V5-01A	RET	chr10	43610184	+	CCDC6	chr10	61612460	-
Frame-shit	ENST00000302035	ENST00000289429		TCGA	RV	THCA	TCGA-FE-A232-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000235739	ENST00000289429		TCGA	RV	THCA	TCGA-FE-A232-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000538290	ENST00000289429		TCGA	RV	THCA	TCGA-FE-A232-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
Frame-shit	ENST00000355199	ENST00000289429		TCGA	RV	THCA	TCGA-FE-A232-01A	SLAMF1	chr1	160616660	-	CD1A	chr1	158224874	+
intron-intron	ENST00000504570	ENST00000360325		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000504570	ENST00000538261		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000504570	ENST00000397317		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000504570	ENST00000571881		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000504570	ENST00000573745		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000360325		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000538261		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000397317		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000571881		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000382051	ENST00000573745		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000360325		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000538261		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000397317		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000571881		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000503434	ENST00000573745		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000360325		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000538261		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000397317		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000571881		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000510033	ENST00000573745		TCGA	RV	THCA	TCGA-FE-A231-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5UTR-3CDS	ENST00000328089	ENST00000377403		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5UTR-3CDS	ENST00000328089	ENST00000602477		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5UTR-intron	ENST00000328089	ENST00000495451		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000357898	ENST00000377403		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000357898	ENST00000602477		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-intron	ENST00000357898	ENST00000495451		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000377399	ENST00000377403		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000377399	ENST00000602477		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-intron	ENST00000377399	ENST00000495451		TCGA	RV	THCA	TCGA-BJ-A0Z9-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
Frame-shit	ENST00000382456	ENST00000369002		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000382456	ENST00000460009		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000411763	ENST00000369002		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-intron	ENST00000411763	ENST00000460009		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000292807	ENST00000369002		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000292807	ENST00000460009		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000439647	ENST00000369002		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-intron	ENST00000439647	ENST00000460009		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000461733	ENST00000369002		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
intron-intron	ENST00000461733	ENST00000460009		TCGA	RV	THCA	TCGA-IM-A3ED-01A	AP2M1	chr3	183901878	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000346916	ENST00000322349		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000346916	ENST00000547833		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000545507	ENST00000322349		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000545507	ENST00000547833		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000333511	ENST00000322349		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000333511	ENST00000547833		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000353555	ENST00000322349		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000353555	ENST00000547833		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
intron-intron	ENST00000574970	ENST00000322349		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
intron-intron	ENST00000574970	ENST00000547833		TCGA	RV	THCA	TCGA-EM-A3AL-01A	BSG	chr19	583492	+	EEA1	chr12	93229203	-
intron-3CDS	ENST00000374706	ENST00000288602		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	CCNY	chr10	35626135	+	BRAF	chr7	140482957	-
5UTR-3CDS	ENST00000265375	ENST00000288602		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	CCNY	chr10	35626135	+	BRAF	chr7	140482957	-
In-frame	ENST00000339497	ENST00000288602		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	CCNY	chr10	35626135	+	BRAF	chr7	140482957	-
In-frame	ENST00000374704	ENST00000288602		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	CCNY	chr10	35626135	+	BRAF	chr7	140482957	-
3UTR-3CDS	ENST00000492478	ENST00000288602		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	CCNY	chr10	35626135	+	BRAF	chr7	140482957	-
5CDS-intron	ENST00000526148	ENST00000323688		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000526148	ENST00000529010		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000526148	ENST00000458064		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000526148	ENST00000532240		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000525681	ENST00000323688		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000525681	ENST00000529010		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000525681	ENST00000458064		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000525681	ENST00000532240		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000339995	ENST00000323688		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000339995	ENST00000529010		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000339995	ENST00000458064		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000339995	ENST00000532240		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000396525	ENST00000323688		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000396525	ENST00000529010		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000396525	ENST00000458064		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000396525	ENST00000532240		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000525995	ENST00000323688		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000525995	ENST00000529010		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000525995	ENST00000458064		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
intron-intron	ENST00000525995	ENST00000532240		TCGA	RV	THCA	TCGA-EM-A2OZ-01A	EIF4G2	chr11	10818600	-	NUCB2	chr11	17297555	+
5CDS-intron	ENST00000356956	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3UM-01A	IGF2R	chr6	160527583	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000356956	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3UM-01A	IGF2R	chr6	160527583	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000475584	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3UM-01A	IGF2R	chr6	160527583	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000475584	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3UM-01A	IGF2R	chr6	160527583	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000461988	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000461988	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000419840	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000419840	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000394893	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000394893	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000475509	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000475509	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000545601	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
5CDS-intron	ENST00000545601	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000450476	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000450476	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000439269	ENST00000326291		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
intron-intron	ENST00000439269	ENST00000489922		TCGA	RV	THCA	TCGA-EM-A1YE-01A	POR	chr7	75616172	+	PIBF1	chr13	73410241	+
Frame-shit	ENST00000261593	ENST00000217740		TCGA	RV	THCA	TCGA-CE-A484-01A	RNF138	chr18	29672849	+	RNF125	chr18	29648261	+
5CDS-3UTR	ENST00000261593	ENST00000583384		TCGA	RV	THCA	TCGA-CE-A484-01A	RNF138	chr18	29672849	+	RNF125	chr18	29648261	+
3UTR-3CDS	ENST00000585103	ENST00000217740		TCGA	RV	THCA	TCGA-CE-A484-01A	RNF138	chr18	29672849	+	RNF125	chr18	29648261	+
3UTR-3UTR	ENST00000585103	ENST00000583384		TCGA	RV	THCA	TCGA-CE-A484-01A	RNF138	chr18	29672849	+	RNF125	chr18	29648261	+
Frame-shit	ENST00000257190	ENST00000217740		TCGA	RV	THCA	TCGA-CE-A484-01A	RNF138	chr18	29672849	+	RNF125	chr18	29648261	+
5CDS-3UTR	ENST00000257190	ENST00000583384		TCGA	RV	THCA	TCGA-CE-A484-01A	RNF138	chr18	29672849	+	RNF125	chr18	29648261	+
intron-intron	ENST00000504570	ENST00000360325		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000504570	ENST00000538261		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000504570	ENST00000397317		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000504570	ENST00000571881		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000504570	ENST00000573745		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000360325		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000538261		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000397317		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-intron	ENST00000382051	ENST00000571881		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5CDS-5UTR	ENST00000382051	ENST00000573745		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000360325		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000538261		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000397317		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000503434	ENST00000571881		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000503434	ENST00000573745		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000360325		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000538261		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000397317		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-intron	ENST00000510033	ENST00000571881		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
intron-5UTR	ENST00000510033	ENST00000573745		TCGA	RV	THCA	TCGA-IM-A3U3-01A	SLC34A2	chr4	25680370	+	CLDN7	chr17	7166264	-
5UTR-3CDS	ENST00000328089	ENST00000377403		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5UTR-3CDS	ENST00000328089	ENST00000602477		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
5UTR-intron	ENST00000328089	ENST00000495451		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000357898	ENST00000377403		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000357898	ENST00000602477		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-intron	ENST00000357898	ENST00000495451		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000377399	ENST00000377403		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-3CDS	ENST00000377399	ENST00000602477		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
intron-intron	ENST00000377399	ENST00000495451		TCGA	RV	THCA	TCGA-J8-A3O2-01A	SPSB1	chr1	9353130	+	H6PD	chr1	9322118	+
Frame-shit	ENST00000395996	ENST00000263102		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	VPS13B	chr8	100287482	+	CCDC6	chr10	61592411	-
Frame-shit	ENST00000358544	ENST00000263102		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	VPS13B	chr8	100287482	+	CCDC6	chr10	61592411	-
Frame-shit	ENST00000357162	ENST00000263102		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	VPS13B	chr8	100287482	+	CCDC6	chr10	61592411	-
intron-3CDS	ENST00000355155	ENST00000263102		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	VPS13B	chr8	100287482	+	CCDC6	chr10	61592411	-
intron-3CDS	ENST00000441350	ENST00000263102		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	VPS13B	chr8	100287482	+	CCDC6	chr10	61592411	-
intron-3CDS	ENST00000521932	ENST00000263102		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	VPS13B	chr8	100287482	+	CCDC6	chr10	61592411	-
5UTR-5UTR	ENST00000378330	ENST00000421184		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
5UTR-5UTR	ENST00000378330	ENST00000393092		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
5UTR-5UTR	ENST00000378330	ENST00000261615		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
5UTR-5UTR	ENST00000301030	ENST00000421184		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
5UTR-5UTR	ENST00000301030	ENST00000393092		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
5UTR-5UTR	ENST00000301030	ENST00000261615		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000563291	ENST00000421184		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000563291	ENST00000393092		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000563291	ENST00000261615		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000567736	ENST00000421184		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000567736	ENST00000393092		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
intron-5UTR	ENST00000567736	ENST00000261615		TCGA	RV	THCA	TCGA-ET-A2N3-01B	ANKRD11	chr16	89556653	-	DPEP1	chr16	89696713	+
In-frame	ENST00000288602	ENST00000324288		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	BRAF	chr7	140487348	-	CIITA	chr16	10995371	+
In-frame	ENST00000288602	ENST00000381835		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	BRAF	chr7	140487348	-	CIITA	chr16	10995371	+
5CDS-3UTR	ENST00000288602	ENST00000537380		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	BRAF	chr7	140487348	-	CIITA	chr16	10995371	+
5CDS-intron	ENST00000316448	ENST00000404460		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000303908		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000409158		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000403716		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000234115		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000439822		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000487980		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000438882		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000538982		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000409612		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000316448	ENST00000409279		TCGA	RV	THCA	TCGA-DJ-A2Q7-01A	CALR	chr19	13055304	+	PLEKHB2	chr2	131876464	+
Frame-shit	ENST00000351797	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A3BN-01A	FAM114A2	chr5	153390801	-	BRAF	chr7	140481493	-
Frame-shit	ENST00000522858	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A3BN-01A	FAM114A2	chr5	153390801	-	BRAF	chr7	140481493	-
Frame-shit	ENST00000520667	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A3BN-01A	FAM114A2	chr5	153390801	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000518946	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A3BN-01A	FAM114A2	chr5	153390801	-	BRAF	chr7	140481493	-
Frame-shit	ENST00000520313	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A3BN-01A	FAM114A2	chr5	153390801	-	BRAF	chr7	140481493	-
intron-3CDS	ENST00000421182	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000421182	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000421182	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000421182	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000421182	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000421182	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000357867	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000357867	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000357867	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000357867	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000357867	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000357867	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000323926	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000323926	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000323926	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000323926	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000323926	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000323926	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000336916	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000336916	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000336916	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000336916	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000336916	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000336916	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000354785	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000354785	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000354785	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000354785	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000354785	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000354785	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000357009	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000357009	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000357009	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000357009	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000357009	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000357009	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000346544	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000346544	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000346544	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000346544	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000346544	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000346544	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000345488	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000345488	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000345488	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000345488	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000345488	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000345488	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000359671	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000359671	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000359671	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000359671	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000359671	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
5CDS-intron	ENST00000359671	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000446046	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000446046	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000446046	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000446046	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000446046	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000446046	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000443816	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000443816	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000443816	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000443816	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000443816	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000443816	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000432072	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000432072	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000432072	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000432072	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000432072	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000432072	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000356005	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000356005	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000356005	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000356005	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000356005	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000356005	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000490833	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000490833	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000490833	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000490833	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000490833	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000490833	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000426059	ENST00000357681		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000426059	ENST00000391954		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-3CDS	ENST00000426059	ENST00000367218		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000426059	ENST00000367219		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000426059	ENST00000341360		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
intron-intron	ENST00000426059	ENST00000466407		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	FN1	chr2	216225177	-	ATP2B4	chr1	203671172	+
Frame-shit	ENST00000304718	ENST00000370854		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
Frame-shit	ENST00000304718	ENST00000393760		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
Frame-shit	ENST00000304718	ENST00000370846		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
Frame-shit	ENST00000304718	ENST00000352634		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
Frame-shit	ENST00000304718	ENST00000353979		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
Frame-shit	ENST00000304718	ENST00000370842		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
Frame-shit	ENST00000304718	ENST00000345745		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
5CDS-3UTR	ENST00000304718	ENST00000495735		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000370854		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000393760		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000370846		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000352634		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000353979		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000370842		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3CDS	ENST00000485685	ENST00000345745		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
intron-3UTR	ENST00000485685	ENST00000495735		TCGA	RV	THCA	TCGA-ET-A40R-01A	GGNBP2	chr17	34937968	+	ZDHHC16	chr10	99216534	+
5CDS-3UTR	ENST00000313949	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000313949	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000313949	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000313949	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000371098	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000371098	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000371098	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000371098	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371075	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371075	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371075	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371075	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371100	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371100	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371100	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371100	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000371099	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000371099	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000371099	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000371099	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371102	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371102	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371102	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371102	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000464624	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000464624	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000464624	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000464624	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000306120	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000306120	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000306120	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000306120	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371095	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371095	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371095	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371095	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371085	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000371085	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371085	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000371085	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000354359	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000354359	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000354359	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000354359	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000265620	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000265620	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000265620	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000265620	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000306090	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-3UTR	ENST00000306090	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000306090	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
5CDS-intron	ENST00000306090	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000371081	ENST00000355327		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3UTR	ENST00000371081	ENST00000261862		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000371081	ENST00000357769		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-intron	ENST00000371081	ENST00000567838		TCGA	RV	THCA	TCGA-ET-A25P-01A	GNAS	chr20	57486241	+	THSD4	chr15	72072881	+
intron-3CDS	ENST00000354171	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A22K-01A	GPX4	chr19	1106786	+	SEC63	chr6	108214782	-
intron-intron	ENST00000354171	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A22K-01A	GPX4	chr19	1106786	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000589115	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A22K-01A	GPX4	chr19	1106786	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000589115	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A22K-01A	GPX4	chr19	1106786	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000216181	ENST00000421745		TCGA	RV	THCA	TCGA-ET-A25G-01A	MYH9	chr22	36677327	-	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000475726	ENST00000421745		TCGA	RV	THCA	TCGA-ET-A25G-01A	MYH9	chr22	36677327	-	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000401701	ENST00000421745		TCGA	RV	THCA	TCGA-ET-A25G-01A	MYH9	chr22	36677327	-	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000252590	ENST00000326195		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000252590	ENST00000376545		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-3CDS	ENST00000252590	ENST00000396515		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000457111		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000452530		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000416932		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000470464		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000419893		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000448939		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000457970		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000475528		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000457078		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000412443		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000546690		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000421608		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000486105		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000383588		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000383587		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000400609		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000485585		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000426219		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000421042		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000552867		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000454094		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000494413		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000423247		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000420257		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000456791		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
intron-intron	ENST00000252590	ENST00000495194		TCGA	RV	THCA	TCGA-EM-A2CL-01A	PLVAP	chr19	17462264	-	ABCF1	chr6	30545853	+
In-frame	ENST00000223073	ENST00000535891		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000223073	ENST00000258749		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000223073	ENST00000431169		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000223073	ENST00000538464		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
5CDS-intron	ENST00000223073	ENST00000491444		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
intron-3CDS	ENST00000481788	ENST00000535891		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
intron-3CDS	ENST00000481788	ENST00000258749		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
intron-3CDS	ENST00000481788	ENST00000431169		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
intron-3CDS	ENST00000481788	ENST00000538464		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
intron-intron	ENST00000481788	ENST00000491444		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000415472	ENST00000535891		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000415472	ENST00000258749		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000415472	ENST00000431169		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000415472	ENST00000538464		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
5CDS-intron	ENST00000415472	ENST00000491444		TCGA	RV	THCA	TCGA-CE-A484-01A	RBM28	chr7	127957712	-	AOAH	chr7	36634036	-
In-frame	ENST00000355710	ENST00000438493		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
In-frame	ENST00000355710	ENST00000452682		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000498586		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000430396		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000374087		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000414907		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000344348		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000374082		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000355710	ENST00000443446		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
In-frame	ENST00000340058	ENST00000438493		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
In-frame	ENST00000340058	ENST00000452682		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000498586		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000430396		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000374087		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000414907		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000344348		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000374082		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
5CDS-3UTR	ENST00000340058	ENST00000443446		TCGA	RV	THCA	TCGA-CE-A482-01A	RET	chr10	43610184	+	NCOA4	chr10	51584616	+
Frame-shit	ENST00000496817	ENST00000538010		TCGA	RV	THCA	TCGA-EL-A4KG-01A	S100A6	chr1	153507075	-	BCL7A	chr12	122473237	+
Frame-shit	ENST00000496817	ENST00000261822		TCGA	RV	THCA	TCGA-EL-A4KG-01A	S100A6	chr1	153507075	-	BCL7A	chr12	122473237	+
Frame-shit	ENST00000368719	ENST00000538010		TCGA	RV	THCA	TCGA-EL-A4KG-01A	S100A6	chr1	153507075	-	BCL7A	chr12	122473237	+
Frame-shit	ENST00000368719	ENST00000261822		TCGA	RV	THCA	TCGA-EL-A4KG-01A	S100A6	chr1	153507075	-	BCL7A	chr12	122473237	+
Frame-shit	ENST00000368720	ENST00000538010		TCGA	RV	THCA	TCGA-EL-A4KG-01A	S100A6	chr1	153507075	-	BCL7A	chr12	122473237	+
Frame-shit	ENST00000368720	ENST00000261822		TCGA	RV	THCA	TCGA-EL-A4KG-01A	S100A6	chr1	153507075	-	BCL7A	chr12	122473237	+
intron-3CDS	ENST00000330266	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-5UTR	ENST00000330266	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
In-frame	ENST00000405975	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
5CDS-5UTR	ENST00000405975	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
In-frame	ENST00000415080	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
5CDS-5UTR	ENST00000415080	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
Frame-shit	ENST00000405006	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
5CDS-5UTR	ENST00000405006	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
5UTR-3CDS	ENST00000485353	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
5UTR-5UTR	ENST00000485353	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-3CDS	ENST00000402360	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-5UTR	ENST00000402360	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-3CDS	ENST00000404790	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-5UTR	ENST00000404790	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-3CDS	ENST00000403856	ENST00000258729		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
intron-5UTR	ENST00000403856	ENST00000491719		TCGA	RV	THCA	TCGA-BJ-A28V-01A	THADA	chr2	43625110	-	IGF2BP3	chr7	23458443	-
5CDS-intron	ENST00000355366	ENST00000479481		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000355366	ENST00000370992		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000355366	ENST00000536831		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000355366	ENST00000315563		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000355366	ENST00000414986		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000358531	ENST00000479481		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000358531	ENST00000370992		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000358531	ENST00000536831		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000358531	ENST00000315563		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000358531	ENST00000414986		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5UTR-intron	ENST00000487035	ENST00000479481		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5UTR-intron	ENST00000487035	ENST00000370992		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5UTR-intron	ENST00000487035	ENST00000536831		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5UTR-intron	ENST00000487035	ENST00000315563		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5UTR-intron	ENST00000487035	ENST00000414986		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000371027	ENST00000479481		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000371027	ENST00000370992		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000371027	ENST00000536831		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000371027	ENST00000315563		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000371027	ENST00000414986		TCGA	RV	THCA	TCGA-DJ-A3VM-01A	ARHGAP19	chr10	98994974	-	RRP12	chr10	99153517	-
5CDS-intron	ENST00000236671	ENST00000371917		TCGA	RV	THCA	TCGA-EM-A2CS-06A	CTSD	chr11	1773982	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000236671	ENST00000493140		TCGA	RV	THCA	TCGA-EM-A2CS-06A	CTSD	chr11	1773982	-	ARFGEF2	chr20	47615777	+
3UTR-3CDS	ENST00000388825	ENST00000544484		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-3CDS	ENST00000388825	ENST00000357008		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-3CDS	ENST00000388825	ENST00000309577		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-3CDS	ENST00000388825	ENST00000544040		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-intron	ENST00000388825	ENST00000540960		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000544484		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000357008		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000309577		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000544040		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-intron	ENST00000521722	ENST00000540960		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000544484		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000357008		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000309577		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000544040		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-intron	ENST00000517973	ENST00000540960		TCGA	RV	THCA	TCGA-DJ-A4V2-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
In-frame	ENST00000354725	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A3UZ-01A	SND1	chr7	127361454	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000467238	ENST00000288602		TCGA	RV	THCA	TCGA-DJ-A3UZ-01A	SND1	chr7	127361454	+	BRAF	chr7	140487384	-
In-frame	ENST00000354725	ENST00000288602		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	SND1	chr7	127721553	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000467238	ENST00000288602		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	SND1	chr7	127721553	+	BRAF	chr7	140482957	-
In-frame	ENST00000415676	ENST00000433700		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000415676	ENST00000443698		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000415676	ENST00000380062		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000415676	ENST00000429045		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000288197	ENST00000433700		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000288197	ENST00000443698		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000288197	ENST00000380062		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000288197	ENST00000429045		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000474759	ENST00000433700		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000474759	ENST00000443698		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000474759	ENST00000380062		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000474759	ENST00000429045		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000490478	ENST00000433700		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000490478	ENST00000443698		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000490478	ENST00000380062		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000490478	ENST00000429045		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
3UTR-3CDS	ENST00000478261	ENST00000433700		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
3UTR-3CDS	ENST00000478261	ENST00000443698		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
3UTR-3CDS	ENST00000478261	ENST00000380062		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
3UTR-3CDS	ENST00000478261	ENST00000429045		TCGA	RV	THCA	TCGA-E8-A432-01A	CACNA2D3	chr3	55021780	+	IFT74	chr9	27009018	+
In-frame	ENST00000263441	ENST00000396193		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000263441	ENST00000396191		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000263441	ENST00000321453		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000263441	ENST00000396184		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000263441	ENST00000479980		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000263441	ENST00000396182		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000395325	ENST00000396193		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000395325	ENST00000396191		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000395325	ENST00000321453		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000395325	ENST00000396184		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000395325	ENST00000479980		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000395325	ENST00000396182		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000371069	ENST00000396193		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000371069	ENST00000396191		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000371069	ENST00000321453		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000371069	ENST00000396184		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000371069	ENST00000479980		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
5CDS-intron	ENST00000371069	ENST00000396182		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
intron-3CDS	ENST00000498720	ENST00000396193		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
intron-3CDS	ENST00000498720	ENST00000396191		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
intron-3CDS	ENST00000498720	ENST00000321453		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
intron-intron	ENST00000498720	ENST00000396184		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
intron-intron	ENST00000498720	ENST00000479980		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
intron-intron	ENST00000498720	ENST00000396182		TCGA	RV	THCA	TCGA-EL-A3H4-01A	DNAJC6	chr1	65855310	+	PDE1C	chr7	31815346	-
In-frame	ENST00000433700	ENST00000415676		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000433700	ENST00000288197		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000433700	ENST00000474759		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000433700	ENST00000490478		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
5CDS-3UTR	ENST00000433700	ENST00000478261		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000443698	ENST00000415676		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000443698	ENST00000288197		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000443698	ENST00000474759		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000443698	ENST00000490478		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
5CDS-3UTR	ENST00000443698	ENST00000478261		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000380062	ENST00000415676		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000380062	ENST00000288197		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000380062	ENST00000474759		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000380062	ENST00000490478		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
5CDS-3UTR	ENST00000380062	ENST00000478261		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000429045	ENST00000415676		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000429045	ENST00000288197		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000429045	ENST00000474759		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
In-frame	ENST00000429045	ENST00000490478		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
5CDS-3UTR	ENST00000429045	ENST00000478261		TCGA	RV	THCA	TCGA-E8-A432-01A	IFT74	chr9	26990193	+	CACNA2D3	chr3	55038790	+
Frame-shit	ENST00000229447	ENST00000421745		TCGA	RV	THCA	TCGA-EM-A4FK-01A	IYD	chr6	150725764	+	BIRC6	chr2	32820101	+
3UTR-3CDS	ENST00000344419	ENST00000421745		TCGA	RV	THCA	TCGA-EM-A4FK-01A	IYD	chr6	150725764	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000392256	ENST00000421745		TCGA	RV	THCA	TCGA-EM-A4FK-01A	IYD	chr6	150725764	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000392255	ENST00000421745		TCGA	RV	THCA	TCGA-EM-A4FK-01A	IYD	chr6	150725764	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000500320	ENST00000421745		TCGA	RV	THCA	TCGA-EM-A4FK-01A	IYD	chr6	150725764	+	BIRC6	chr2	32820101	+
intron-3CDS	ENST00000425615	ENST00000421745		TCGA	RV	THCA	TCGA-EM-A4FK-01A	IYD	chr6	150725764	+	BIRC6	chr2	32820101	+
Frame-shit	ENST00000280285	ENST00000310581		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000280285	ENST00000296820		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000280285	ENST00000334602		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000280285	ENST00000508104		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000280285	ENST00000522877		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000382142	ENST00000310581		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000382142	ENST00000296820		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000382142	ENST00000334602		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000382142	ENST00000508104		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000382142	ENST00000522877		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000264934	ENST00000310581		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000264934	ENST00000296820		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000264934	ENST00000334602		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000264934	ENST00000508104		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
5CDS-5UTR	ENST00000264934	ENST00000522877		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
intron-3CDS	ENST00000510216	ENST00000310581		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
intron-3CDS	ENST00000510216	ENST00000296820		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
intron-3CDS	ENST00000510216	ENST00000334602		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
intron-3CDS	ENST00000510216	ENST00000508104		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
intron-5UTR	ENST00000510216	ENST00000522877		TCGA	RV	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1294781	-
Frame-shit	ENST00000394480	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000394480	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
In-frame	ENST00000557856	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000557856	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
Frame-shit	ENST00000357724	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000357724	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
Frame-shit	ENST00000355254	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000355254	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
Frame-shit	ENST00000360948	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000360948	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
Frame-shit	ENST00000542733	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000542733	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
In-frame	ENST00000558676	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000558676	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
Frame-shit	ENST00000317501	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000317501	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
intron-3CDS	ENST00000558306	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
intron-intron	ENST00000558306	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
In-frame	ENST00000540489	ENST00000396373		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
5CDS-intron	ENST00000540489	ENST00000544715		TCGA	RV	THCA	TCGA-E8-A438-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12022358	+
Frame-shit	ENST00000372577	ENST00000372592		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
Frame-shit	ENST00000372577	ENST00000308941		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
Frame-shit	ENST00000372577	ENST00000353176		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
Frame-shit	ENST00000372577	ENST00000421063		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
5CDS-intron	ENST00000372577	ENST00000487504		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
3UTR-3CDS	ENST00000550219	ENST00000372592		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
3UTR-3CDS	ENST00000550219	ENST00000308941		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
3UTR-3CDS	ENST00000550219	ENST00000353176		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
3UTR-3CDS	ENST00000550219	ENST00000421063		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
3UTR-intron	ENST00000550219	ENST00000487504		TCGA	RV	THCA	TCGA-FE-A3PA-01A	NUP188	chr9	131711522	+	PHYHD1	chr9	131698727	+
intron-intron	ENST00000552285	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000552285	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000552285	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000552285	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000552285	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000552285	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000315970	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000315970	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000315970	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000315970	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000315970	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000315970	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000439210	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000439210	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000439210	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000439210	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000439210	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000439210	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000389146	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000389146	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000389146	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000389146	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000389146	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000389146	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000413095	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000413095	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000413095	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000413095	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000413095	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000413095	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000551035	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000551035	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000551035	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000551035	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000551035	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000551035	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000435406	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000435406	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000435406	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000435406	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000435406	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000435406	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000257966	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000257966	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000257966	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000257966	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000257966	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000257966	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000389142	ENST00000267101		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000389142	ENST00000450146		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000389142	ENST00000415288		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000389142	ENST00000553131		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000389142	ENST00000411731		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000389142	ENST00000549832		TCGA	RV	THCA	TCGA-DJ-A2Q4-01A	OS9	chr12	58115338	+	ERBB3	chr12	56492035	+
5CDS-3UTR	ENST00000355710	ENST00000280772		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000355710	ENST00000373827		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000355710	ENST00000355288		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000355710	ENST00000503366		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-intron	ENST00000355710	ENST00000510382		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-intron	ENST00000355710	ENST00000460468		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000340058	ENST00000280772		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000340058	ENST00000373827		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000340058	ENST00000355288		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-3UTR	ENST00000340058	ENST00000503366		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-intron	ENST00000340058	ENST00000510382		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
5CDS-intron	ENST00000340058	ENST00000460468		TCGA	RV	THCA	TCGA-E8-A44M-01A	RET	chr10	43604678	+	ANK3	chr10	61789584	-
Frame-shit	ENST00000344293	ENST00000414563		TCGA	RV	THCA	TCGA-CE-A13K-01A	TAF3	chr10	7866523	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000344293	ENST00000359775		TCGA	RV	THCA	TCGA-CE-A13K-01A	TAF3	chr10	7866523	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000344293	ENST00000341375		TCGA	RV	THCA	TCGA-CE-A13K-01A	TAF3	chr10	7866523	+	ZDHHC14	chr6	157963617	+
In-frame	ENST00000374464	ENST00000395347		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61414347	-
In-frame	ENST00000374464	ENST00000395348		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61414347	-
5CDS-intron	ENST00000374464	ENST00000490066		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61414347	-
In-frame	ENST00000374466	ENST00000395347		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61414347	-
In-frame	ENST00000374466	ENST00000395348		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61414347	-
5CDS-intron	ENST00000374466	ENST00000490066		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61414347	-
In-frame	ENST00000238256	ENST00000355710		TCGA	RV	THCA	TCGA-ET-A3DQ-01A	FKBP15	chr9	115932802	-	RET	chr10	43612032	+
In-frame	ENST00000238256	ENST00000340058		TCGA	RV	THCA	TCGA-ET-A3DQ-01A	FKBP15	chr9	115932802	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493847	ENST00000355710		TCGA	RV	THCA	TCGA-ET-A3DQ-01A	FKBP15	chr9	115932802	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493847	ENST00000340058		TCGA	RV	THCA	TCGA-ET-A3DQ-01A	FKBP15	chr9	115932802	-	RET	chr10	43612032	+
5CDS-intron	ENST00000368354	ENST00000264818		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368354	ENST00000524462		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368354	ENST00000525621		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368354	ENST00000529370		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368354	ENST00000529422		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368352	ENST00000264818		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368352	ENST00000524462		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368352	ENST00000525621		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368352	ENST00000529370		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368352	ENST00000529422		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368347	ENST00000264818		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368347	ENST00000524462		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368347	ENST00000525621		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368347	ENST00000529370		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368347	ENST00000529422		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
intron-intron	ENST00000462780	ENST00000264818		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
intron-intron	ENST00000462780	ENST00000524462		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
intron-intron	ENST00000462780	ENST00000525621		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
intron-intron	ENST00000462780	ENST00000529370		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
intron-intron	ENST00000462780	ENST00000529422		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368349	ENST00000264818		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368349	ENST00000524462		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368349	ENST00000525621		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368349	ENST00000529370		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000368349	ENST00000529422		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292254	ENST00000264818		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292254	ENST00000524462		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292254	ENST00000525621		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292254	ENST00000529370		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000292254	ENST00000529422		TCGA	RV	THCA	TCGA-EM-A3O6-01A	RUSC1	chr1	155300903	+	TYK2	chr19	10491352	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3ZP-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3ZP-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000360184	ENST00000263593		TCGA	RV	THCA	TCGA-EM-A22N-01A	DYNC1H1	chr14	102517128	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000360184	ENST00000545756		TCGA	RV	THCA	TCGA-EM-A22N-01A	DYNC1H1	chr14	102517128	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000360184	ENST00000525730		TCGA	RV	THCA	TCGA-EM-A22N-01A	DYNC1H1	chr14	102517128	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000556791	ENST00000263593		TCGA	RV	THCA	TCGA-EM-A22N-01A	DYNC1H1	chr14	102517128	+	SIAE	chr11	124543777	-
intron-intron	ENST00000556791	ENST00000545756		TCGA	RV	THCA	TCGA-EM-A22N-01A	DYNC1H1	chr14	102517128	+	SIAE	chr11	124543777	-
intron-intron	ENST00000556791	ENST00000525730		TCGA	RV	THCA	TCGA-EM-A22N-01A	DYNC1H1	chr14	102517128	+	SIAE	chr11	124543777	-
In-frame	ENST00000313949	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000313949	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000371098	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000371098	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
In-frame	ENST00000371075	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371075	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371100	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371100	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000371099	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000371099	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371102	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371102	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
In-frame	ENST00000464624	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000464624	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000306120	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000306120	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371095	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371095	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371085	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371085	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000354359	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000354359	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000265620	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000265620	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000306090	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000306090	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000371081	ENST00000311127		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000371081	ENST00000477536		TCGA	RV	THCA	TCGA-DJ-A13S-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
In-frame	ENST00000302754	ENST00000369002		TCGA	RV	THCA	TCGA-CE-A481-01A	JUNB	chr19	12904124	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000302754	ENST00000460009		TCGA	RV	THCA	TCGA-CE-A481-01A	JUNB	chr19	12904124	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000313050	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
5CDS-intron	ENST00000313050	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
intron-3CDS	ENST00000467838	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
intron-intron	ENST00000467838	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
Frame-shit	ENST00000371706	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
5CDS-intron	ENST00000371706	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
intron-3CDS	ENST00000313084	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
intron-intron	ENST00000313084	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
Frame-shit	ENST00000290037	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
5CDS-intron	ENST00000290037	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
Frame-shit	ENST00000431893	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
5CDS-intron	ENST00000431893	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
intron-3CDS	ENST00000398335	ENST00000277541		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
intron-intron	ENST00000398335	ENST00000491649		TCGA	RV	THCA	TCGA-DJ-A2Q3-01A	SEC16A	chr9	139357339	-	NOTCH1	chr9	139438554	-
5CDS-intron	ENST00000393651	ENST00000356362		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-5UTR	ENST00000393651	ENST00000469408		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000357311	ENST00000356362		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000357311	ENST00000469408		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000489828	ENST00000356362		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000489828	ENST00000469408		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-intron	ENST00000493638	ENST00000356362		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
intron-5UTR	ENST00000493638	ENST00000469408		TCGA	RV	THCA	TCGA-EM-A2OV-01A	SRPK2	chr7	105029095	-	PUS7	chr7	105148991	-
5CDS-intron	ENST00000297071	ENST00000330266		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000405975		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000415080		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000405006		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000485353		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000402360		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000404790		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000297071	ENST00000403856		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000330266		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000405975		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000415080		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000405006		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000485353		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000402360		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000404790		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000392502	ENST00000403856		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000330266		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000405975		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000415080		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000405006		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000485353		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000402360		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000404790		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
5CDS-intron	ENST00000538367	ENST00000403856		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000330266		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000405975		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000415080		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000405006		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000485353		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000402360		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000404790		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
intron-intron	ENST00000474586	ENST00000403856		TCGA	RV	THCA	TCGA-ET-A3DV-01A	TRA2A	chr7	23545365	-	THADA	chr2	43460021	-
In-frame	ENST00000242351	ENST00000288602		TCGA	RV	THCA	TCGA-KS-A4ID-01A	ZC3HAV1	chr7	138758602	-	BRAF	chr7	140481493	-
In-frame	ENST00000464606	ENST00000288602		TCGA	RV	THCA	TCGA-KS-A4ID-01A	ZC3HAV1	chr7	138758602	-	BRAF	chr7	140481493	-
In-frame	ENST00000471652	ENST00000288602		TCGA	RV	THCA	TCGA-KS-A4ID-01A	ZC3HAV1	chr7	138758602	-	BRAF	chr7	140481493	-
5CDS-intron	ENST00000338110	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000338110	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000395248	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000395248	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000575627	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000575627	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000566897	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000566897	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000569545	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000569545	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000563060	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000563060	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000412304	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000412304	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000564546	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
3UTR-intron	ENST00000564546	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000564595	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000564595	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000569798	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000569798	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000395240	ENST00000371917		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000395240	ENST00000493140		TCGA	RV	THCA	TCGA-J8-A3O2-06A	ALDOA	chr16	30081734	+	ARFGEF2	chr20	47615777	+
Frame-shit	ENST00000313949	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000313949	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000313949	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000313949	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371098	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371098	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371098	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000371075	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371075	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371075	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371100	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371100	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371100	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371099	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371099	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371099	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371102	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371102	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371102	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
Frame-shit	ENST00000464624	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000464624	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000464624	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000306120	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000306120	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000306120	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371095	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371095	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371095	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000371085	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371085	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000371085	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000354359	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000354359	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000354359	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000265620	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000265620	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000265620	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000306090	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000306090	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
5CDS-intron	ENST00000306090	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000361654		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000545889		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000302528		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000358808		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000537178		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-3CDS	ENST00000371081	ENST00000540338		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371081	ENST00000536634		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
intron-intron	ENST00000371081	ENST00000540539		TCGA	RV	THCA	TCGA-DE-A2OL-01A	GNAS	chr20	57486241	+	CLIP1	chr12	122819252	-
In-frame	ENST00000286091	ENST00000263593		TCGA	RV	THCA	TCGA-EL-A3ZR-01A	PDIA4	chr7	148700154	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000286091	ENST00000545756		TCGA	RV	THCA	TCGA-EL-A3ZR-01A	PDIA4	chr7	148700154	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000286091	ENST00000525730		TCGA	RV	THCA	TCGA-EL-A3ZR-01A	PDIA4	chr7	148700154	-	SIAE	chr11	124543777	-
5CDS-5UTR	ENST00000392882	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000392882	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000392882	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000392882	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000392882	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000358655	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000358655	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000358655	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000358655	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000358655	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000355338	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000355338	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000355338	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000355338	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000355338	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000344102	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000344102	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000344102	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000344102	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000344102	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000557135	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000557135	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000557135	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000557135	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000557135	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000556645	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-5UTR	ENST00000556645	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000556645	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-intron	ENST00000556645	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5CDS-3UTR	ENST00000556645	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5UTR-5UTR	ENST00000554084	ENST00000374706		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5UTR-5UTR	ENST00000554084	ENST00000265375		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5UTR-intron	ENST00000554084	ENST00000339497		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5UTR-intron	ENST00000554084	ENST00000374704		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
5UTR-3UTR	ENST00000554084	ENST00000492478		TCGA	RV	THCA	TCGA-EM-A3AQ-01A	WARS	chr14	100828045	-	CCNY	chr10	35772332	+
In-frame	ENST00000313949	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000313949	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000371098	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000371098	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
In-frame	ENST00000371075	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371075	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371100	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371100	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000371099	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000371099	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371102	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371102	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
In-frame	ENST00000464624	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000464624	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000306120	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000306120	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371095	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371095	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000371085	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000371085	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000354359	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000354359	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000265620	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000265620	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
Frame-shit	ENST00000306090	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
5CDS-intron	ENST00000306090	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-3CDS	ENST00000371081	ENST00000311127		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
intron-intron	ENST00000371081	ENST00000477536		TCGA	RV	THCA	TCGA-H2-A2K9-01A	GNAS	chr20	57486241	+	HEG1	chr3	124692749	-
3UTR-3CDS	ENST00000388825	ENST00000544484		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-3CDS	ENST00000388825	ENST00000357008		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-3CDS	ENST00000388825	ENST00000309577		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-3CDS	ENST00000388825	ENST00000544040		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
3UTR-intron	ENST00000388825	ENST00000540960		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000544484		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000357008		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000309577		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000521722	ENST00000544040		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-intron	ENST00000521722	ENST00000540960		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000544484		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000357008		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000309577		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-3CDS	ENST00000517973	ENST00000544040		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
intron-intron	ENST00000517973	ENST00000540960		TCGA	RV	THCA	TCGA-FY-A3W9-01A	GPX3	chr5	150408515	+	CHD4	chr12	6710696	-
In-frame	ENST00000354725	ENST00000288602		TCGA	RV	THCA	TCGA-FY-A40N-01A	SND1	chr7	127361454	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000467238	ENST00000288602		TCGA	RV	THCA	TCGA-FY-A40N-01A	SND1	chr7	127361454	+	BRAF	chr7	140487384	-
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000317501		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000558306		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000540489		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000317501		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000558306		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000540489		TCGA	RV	THCA	TCGA-DJ-A4V0-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000268182	ENST00000354377		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-intron	ENST00000268182	ENST00000558115		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-5UTR	ENST00000268182	ENST00000379090		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000354377		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560738	ENST00000558115		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000379090		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000354377		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560020	ENST00000558115		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000379090		TCGA	RV	THCA	TCGA-FY-A40L-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
In-frame	ENST00000271526	ENST00000370282		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
5CDS-5UTR	ENST00000271526	ENST00000483033		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
5CDS-5UTR	ENST00000271526	ENST00000479918		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
5CDS-5UTR	ENST00000271526	ENST00000370280		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
In-frame	ENST00000353233	ENST00000370282		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
5CDS-5UTR	ENST00000353233	ENST00000483033		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
5CDS-5UTR	ENST00000353233	ENST00000479918		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
5CDS-5UTR	ENST00000353233	ENST00000370280		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
intron-3CDS	ENST00000491853	ENST00000370282		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
intron-5UTR	ENST00000491853	ENST00000483033		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
intron-5UTR	ENST00000491853	ENST00000479918		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
intron-5UTR	ENST00000491853	ENST00000370280		TCGA	RV	THCA	TCGA-ET-A40S-01A	PRCC	chr1	156738031	+	TMED5	chr1	93625783	-
In-frame	ENST00000418917	ENST00000397752		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000418917	ENST00000318493		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000418917	ENST00000436117		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000418917	ENST00000495962		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000418917	ENST00000539704		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000490574	ENST00000397752		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000490574	ENST00000318493		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000490574	ENST00000436117		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000490574	ENST00000495962		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000490574	ENST00000539704		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000240851	ENST00000397752		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000240851	ENST00000318493		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000240851	ENST00000436117		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000240851	ENST00000495962		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000240851	ENST00000539704		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000476228	ENST00000397752		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
In-frame	ENST00000476228	ENST00000318493		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000476228	ENST00000436117		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000476228	ENST00000495962		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000476228	ENST00000539704		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
intron-3CDS	ENST00000481203	ENST00000397752		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
intron-3CDS	ENST00000481203	ENST00000318493		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
intron-intron	ENST00000481203	ENST00000436117		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
intron-intron	ENST00000481203	ENST00000495962		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
intron-intron	ENST00000481203	ENST00000539704		TCGA	RV	THCA	TCGA-FK-A3S3-01A	TFG	chr3	100451516	+	MET	chr7	116414935	+
5CDS-intron	ENST00000526148	ENST00000233057		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000526148	ENST00000395127		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000526148	ENST00000405334		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000525681	ENST00000233057		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000525681	ENST00000395127		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000525681	ENST00000405334		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000339995	ENST00000233057		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000339995	ENST00000395127		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000339995	ENST00000405334		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000396525	ENST00000233057		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000396525	ENST00000395127		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000396525	ENST00000405334		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000525995	ENST00000233057		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000525995	ENST00000395127		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000525995	ENST00000405334		TCGA	RV	THCA	TCGA-CE-A483-01A	EIF4G2	chr11	10818601	-	EIF2AK2	chr2	37342384	-
In-frame	ENST00000337565	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A2MX-01A	BCL2L11	chr2	111881716	+	BRAF	chr7	140482957	-
intron-3CDS	ENST00000393253	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A2MX-01A	BCL2L11	chr2	111881716	+	BRAF	chr7	140482957	-
In-frame	ENST00000357757	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A2MX-01A	BCL2L11	chr2	111881716	+	BRAF	chr7	140482957	-
In-frame	ENST00000308659	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A2MX-01A	BCL2L11	chr2	111881716	+	BRAF	chr7	140482957	-
In-frame	ENST00000393256	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A2MX-01A	BCL2L11	chr2	111881716	+	BRAF	chr7	140482957	-
In-frame	ENST00000405953	ENST00000288602		TCGA	RV	THCA	TCGA-ET-A2MX-01A	BCL2L11	chr2	111881716	+	BRAF	chr7	140482957	-
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000317501		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000558306		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000540489		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000317501		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000558306		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000540489		TCGA	RV	THCA	TCGA-CE-A27D-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000317501		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000558306		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000540489		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000317501		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000558306		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000540489		TCGA	RV	THCA	TCGA-E8-A438-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5UTR-3CDS	ENST00000474874	ENST00000358338		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000474874	ENST00000367567		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000474874	ENST00000357570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000474874	ENST00000367570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000474874	ENST00000526775		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000474874	ENST00000360108		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000474874	ENST00000367573		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-3CDS	ENST00000377482	ENST00000358338		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000377482	ENST00000367567		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000377482	ENST00000357570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000377482	ENST00000367570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000377482	ENST00000526775		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000377482	ENST00000360108		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000377482	ENST00000367573		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-3CDS	ENST00000467067	ENST00000358338		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-5UTR	ENST00000467067	ENST00000367567		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-5UTR	ENST00000467067	ENST00000357570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-5UTR	ENST00000467067	ENST00000367570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-5UTR	ENST00000467067	ENST00000526775		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-5UTR	ENST00000467067	ENST00000360108		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
intron-5UTR	ENST00000467067	ENST00000367573		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-3CDS	ENST00000469499	ENST00000358338		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000469499	ENST00000367567		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000469499	ENST00000357570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000469499	ENST00000367570		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000469499	ENST00000526775		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000469499	ENST00000360108		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
5UTR-5UTR	ENST00000469499	ENST00000367573		TCGA	RV	THCA	TCGA-4C-A93U-01A	ERRFI1	chr1	8086218	-	CACNA1E	chr1	181546902	+
Frame-shit	ENST00000426016	ENST00000263881		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000426016	ENST00000437545		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000426016	ENST00000341681		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000426016	ENST00000484274		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000426016	ENST00000536018		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000426016	ENST00000474502		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
In-frame	ENST00000402219	ENST00000263881		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000402219	ENST00000437545		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000402219	ENST00000341681		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000402219	ENST00000484274		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000402219	ENST00000536018		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000402219	ENST00000474502		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
In-frame	ENST00000395038	ENST00000263881		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000395038	ENST00000437545		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000395038	ENST00000341681		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000395038	ENST00000484274		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000395038	ENST00000536018		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000395038	ENST00000474502		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
Frame-shit	ENST00000428721	ENST00000263881		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000428721	ENST00000437545		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000428721	ENST00000341681		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-5UTR	ENST00000428721	ENST00000484274		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000428721	ENST00000536018		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
5CDS-intron	ENST00000428721	ENST00000474502		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
intron-3CDS	ENST00000472480	ENST00000263881		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
intron-5UTR	ENST00000472480	ENST00000437545		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
intron-5UTR	ENST00000472480	ENST00000341681		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
intron-5UTR	ENST00000472480	ENST00000484274		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
intron-intron	ENST00000472480	ENST00000536018		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
intron-intron	ENST00000472480	ENST00000474502		TCGA	RV	THCA	TCGA-EL-A3H8-01A	SOS1	chr2	39283843	-	MAP4K3	chr2	39605264	-
In-frame	ENST00000543086	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000543086	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000546231	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000546231	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000397203	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000397203	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000360905	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000360905	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000589028	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000589028	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000355446	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
In-frame	ENST00000355446	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000536573	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000536573	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3T9-01A	ERC1	chr12	1346070	+	RET	chr10	43612032	+
intron-intron	ENST00000421182	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000421182	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000357867	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000357867	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000323926	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000323926	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000336916	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000336916	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000354785	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000354785	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000357009	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000357009	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000346544	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000346544	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000345488	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000345488	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000359671	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000359671	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000446046	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000446046	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000443816	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000443816	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000432072	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000432072	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000356005	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000356005	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000490833	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000490833	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000426059	ENST00000371917		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000426059	ENST00000493140		TCGA	RV	THCA	TCGA-DJ-A3V0-01A	FN1	chr2	216225181	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000372836	ENST00000497517		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000539820		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000382269		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000349624		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000345913		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000346956		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000337415		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000329066		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-5UTR	ENST00000372836	ENST00000382201		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
5CDS-intron	ENST00000372836	ENST00000382198		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-intron	ENST00000394142	ENST00000497517		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000539820		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000382269		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000349624		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000345913		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000346956		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000337415		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000329066		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-5UTR	ENST00000394142	ENST00000382201		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
intron-intron	ENST00000394142	ENST00000382198		TCGA	RV	THCA	TCGA-H2-A2K9-01A	CNPY3	chr6	42902336	+	TPO	chr2	1417252	+
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000317501		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000558306		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000540489		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000317501		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000558306		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000540489		TCGA	RV	THCA	TCGA-DJ-A3UV-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000316843	ENST00000541285		TCGA	RV	THCA	TCGA-FY-A40L-01A	LLGL1	chr17	18136116	+	ALKBH5	chr17	18110129	+
5CDS-5UTR	ENST00000316843	ENST00000399138		TCGA	RV	THCA	TCGA-FY-A40L-01A	LLGL1	chr17	18136116	+	ALKBH5	chr17	18110129	+
In-frame	ENST00000288602	ENST00000545844		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000567887		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000372915		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000361689		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000539005		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000317713		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000564288		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000288602	ENST00000289893		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
5CDS-intron	ENST00000288602	ENST00000536367		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
5CDS-intron	ENST00000288602	ENST00000484793		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
5CDS-intron	ENST00000288602	ENST00000602421		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
5CDS-intron	ENST00000288602	ENST00000476350		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	BRAF	chr7	140494108	-	MACF1	chr1	39898207	+
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000317501		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000558306		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000540489		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000317501		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000558306		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000540489		TCGA	RV	THCA	TCGA-EL-A3ZN-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000233813	ENST00000263593		TCGA	RV	THCA	TCGA-EL-A3MW-01A	IGFBP5	chr2	217536828	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000233813	ENST00000545756		TCGA	RV	THCA	TCGA-EL-A3MW-01A	IGFBP5	chr2	217536828	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000233813	ENST00000525730		TCGA	RV	THCA	TCGA-EL-A3MW-01A	IGFBP5	chr2	217536828	-	SIAE	chr11	124543777	-
In-frame	ENST00000263918	ENST00000389048		TCGA	RV	THCA	TCGA-DJ-A3US-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000263918	ENST00000431873		TCGA	RV	THCA	TCGA-DJ-A3US-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000263918	ENST00000498037		TCGA	RV	THCA	TCGA-DJ-A3US-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
In-frame	ENST00000379213	ENST00000389048		TCGA	RV	THCA	TCGA-DJ-A3US-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000379213	ENST00000431873		TCGA	RV	THCA	TCGA-DJ-A3US-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
5CDS-intron	ENST00000379213	ENST00000498037		TCGA	RV	THCA	TCGA-DJ-A3US-01A	STRN	chr2	37143221	-	ALK	chr2	29446394	-
In-frame	ENST00000211998	ENST00000369061		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000357555		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000358487		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000356226		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000369060		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000369059		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000346997		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000457416		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000351936		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000360144		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000369056		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000490349		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000359354		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000211998	ENST00000478859		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
In-frame	ENST00000372755	ENST00000369061		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000357555		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000358487		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000356226		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000369060		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000369059		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000346997		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000457416		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000351936		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000360144		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000369056		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000490349		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000359354		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000372755	ENST00000478859		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-3CDS	ENST00000478896	ENST00000369061		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000357555		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000358487		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000356226		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000369060		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000369059		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000346997		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000457416		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000351936		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000360144		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000369056		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000490349		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000359354		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
3UTR-intron	ENST00000478896	ENST00000478859		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
In-frame	ENST00000417648	ENST00000369061		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000357555		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000358487		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000356226		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000369060		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000369059		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000346997		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000457416		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000351936		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000360144		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000369056		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000490349		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000359354		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
5CDS-intron	ENST00000417648	ENST00000478859		TCGA	RV	THCA	TCGA-EM-A3FP-01A	VCL	chr10	75758133	+	FGFR2	chr10	123239535	-
In-frame	ENST00000543086	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000543086	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000546231	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000546231	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000397203	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000397203	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000360905	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000360905	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000589028	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000589028	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000355446	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000355446	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
intron-3CDS	ENST00000536573	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
intron-3CDS	ENST00000536573	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A3FQ-01A	ERC1	chr12	1553916	+	RET	chr10	43612032	+
In-frame	ENST00000412585	ENST00000336617		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
5CDS-intron	ENST00000412585	ENST00000422660		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
5CDS-3UTR	ENST00000412585	ENST00000495244		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3CDS	ENST00000425848	ENST00000336617		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-intron	ENST00000425848	ENST00000422660		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3UTR	ENST00000425848	ENST00000495244		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3CDS	ENST00000450871	ENST00000336617		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-intron	ENST00000450871	ENST00000422660		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3UTR	ENST00000450871	ENST00000495244		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3CDS	ENST00000359635	ENST00000336617		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-intron	ENST00000359635	ENST00000422660		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3UTR	ENST00000359635	ENST00000495244		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3CDS	ENST00000435618	ENST00000336617		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-intron	ENST00000435618	ENST00000422660		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3UTR	ENST00000435618	ENST00000495244		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3CDS	ENST00000421349	ENST00000336617		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-intron	ENST00000421349	ENST00000422660		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
intron-3UTR	ENST00000421349	ENST00000495244		TCGA	RV	THCA	TCGA-GE-A2C6-01A	HLA-B	chr6	31321649	-	RNASEH2B	chr13	51530588	+
Frame-shit	ENST00000375299	ENST00000375312		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000375299	ENST00000360383		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000375299	ENST00000356221		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000375299	ENST00000375310		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000375299	ENST00000375308		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000375299	ENST00000252457		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000375299	ENST00000252458		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
5CDS-intron	ENST00000375299	ENST00000461716		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000375312		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000360383		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000356221		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000375310		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000375308		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000252457		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
Frame-shit	ENST00000351487	ENST00000252458		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
5CDS-intron	ENST00000351487	ENST00000461716		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000375312		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000360383		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000356221		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000375310		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000375308		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000252457		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-3CDS	ENST00000475218	ENST00000252458		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
3UTR-intron	ENST00000475218	ENST00000461716		TCGA	RV	THCA	TCGA-DJ-A2QA-01A	UPF3A	chr13	115052104	+	CDC16	chr13	115028354	+
intron-3CDS	ENST00000536122	ENST00000262144		TCGA	RV	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90089132	+	WDR59	chr16	74976724	-
intron-intron	ENST00000536122	ENST00000562331		TCGA	RV	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90089132	+	WDR59	chr16	74976724	-
Frame-shit	ENST00000268699	ENST00000262144		TCGA	RV	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90089132	+	WDR59	chr16	74976724	-
5CDS-intron	ENST00000268699	ENST00000562331		TCGA	RV	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90089132	+	WDR59	chr16	74976724	-
3UTR-3CDS	ENST00000540721	ENST00000262144		TCGA	RV	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90089132	+	WDR59	chr16	74976724	-
3UTR-intron	ENST00000540721	ENST00000562331		TCGA	RV	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90089132	+	WDR59	chr16	74976724	-
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	THCA	TCGA-EM-A3O6-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	THCA	TCGA-EM-A3O6-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
In-frame	ENST00000370577	ENST00000370658		TCGA	RV	THCA	TCGA-FE-A239-01A	LMBRD1	chr6	70428848	-	LGSN	chr6	64004950	-
In-frame	ENST00000370577	ENST00000370657		TCGA	RV	THCA	TCGA-FE-A239-01A	LMBRD1	chr6	70428848	-	LGSN	chr6	64004950	-
In-frame	ENST00000370570	ENST00000370658		TCGA	RV	THCA	TCGA-FE-A239-01A	LMBRD1	chr6	70428848	-	LGSN	chr6	64004950	-
In-frame	ENST00000370570	ENST00000370657		TCGA	RV	THCA	TCGA-FE-A239-01A	LMBRD1	chr6	70428848	-	LGSN	chr6	64004950	-
In-frame	ENST00000397661	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000397661	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000397661	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000397661	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000397661	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000397661	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000397661	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000592199	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000592199	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000592199	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000592199	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000592199	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000592199	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000592199	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000587760	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000587760	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587760	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587760	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587760	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587760	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000587760	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000585575	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000585575	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000585575	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000585575	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000585575	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000585575	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000585575	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000360105	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000360105	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000360105	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000360105	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000360105	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000360105	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000360105	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000588228	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000588228	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000588228	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000588228	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000588228	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000588228	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000588228	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000587260	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000587260	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587260	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587260	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587260	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000587260	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000587260	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000358552	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000358552	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000358552	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000358552	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000358552	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-intron	ENST00000358552	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
5CDS-3UTR	ENST00000358552	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-3CDS	ENST00000588680	ENST00000252577		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-3CDS	ENST00000588680	ENST00000360315		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000588680	ENST00000537887		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000588680	ENST00000404158		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000588680	ENST00000358713		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-intron	ENST00000588680	ENST00000429563		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
intron-3UTR	ENST00000588680	ENST00000473184		TCGA	RV	THCA	TCGA-FY-A2QD-01A	NFIX	chr19	13184840	+	GATAD2A	chr19	19603115	+
In-frame	ENST00000396373	ENST00000394480		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000557856		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000357724		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000355254		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000360948		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000542733		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000558676		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
In-frame	ENST00000396373	ENST00000317501		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000558306		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000396373	ENST00000540489		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000394480		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000557856		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000357724		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000355254		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000360948		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000542733		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000558676		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000544715	ENST00000317501		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000558306		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000544715	ENST00000540489		TCGA	RV	THCA	TCGA-FE-A3PD-01A	ETV6	chr12	12006495	+	NTRK3	chr15	88576276	-
Frame-shit	ENST00000388825	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A22L-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000388825	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A22L-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000521722	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A22L-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-intron	ENST00000521722	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A22L-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000517973	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A22L-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-intron	ENST00000517973	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A22L-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-BJ-A28Z-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
Frame-shit	ENST00000298585	ENST00000371421		TCGA	RV	THCA	TCGA-EM-A2P3-01A	ZMYND19	chr9	140481419	-	ARRDC1	chr9	140507348	+
5CDS-3UTR	ENST00000298585	ENST00000491911		TCGA	RV	THCA	TCGA-EM-A2P3-01A	ZMYND19	chr9	140481419	-	ARRDC1	chr9	140507348	+
intron-3CDS	ENST00000471957	ENST00000371421		TCGA	RV	THCA	TCGA-EM-A2P3-01A	ZMYND19	chr9	140481419	-	ARRDC1	chr9	140507348	+
intron-3UTR	ENST00000471957	ENST00000491911		TCGA	RV	THCA	TCGA-EM-A2P3-01A	ZMYND19	chr9	140481419	-	ARRDC1	chr9	140507348	+
5CDS-intron	ENST00000309311	ENST00000267101		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000309311	ENST00000450146		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000309311	ENST00000415288		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000309311	ENST00000553131		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000309311	ENST00000411731		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000309311	ENST00000549832		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000600720	ENST00000267101		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000600720	ENST00000450146		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000600720	ENST00000415288		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000600720	ENST00000553131		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000600720	ENST00000411731		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000600720	ENST00000549832		TCGA	RV	THCA	TCGA-ET-A3DR-01A	EEF2	chr19	3976055	-	ERBB3	chr12	56492035	+
5UTR-3CDS	ENST00000397010	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000309576	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-3CDS	ENST00000397015	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397012	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397026	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397000	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000539812	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-3CDS	ENST00000287820	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397010	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000309576	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-3CDS	ENST00000397015	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397012	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397026	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397000	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000539812	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-3CDS	ENST00000287820	ENST00000348715		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000397647		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000263335		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000429538		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000263334		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397010	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397010	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000309576	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000309576	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-3CDS	ENST00000397015	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000397015	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397012	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397012	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397026	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397026	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000397000	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000397000	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-3CDS	ENST00000539812	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
5UTR-intron	ENST00000539812	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-3CDS	ENST00000287820	ENST00000348715		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000397647		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000263335		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000429538		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
intron-intron	ENST00000287820	ENST00000263334		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PPARG	chr3	12353952	+	PAX8	chr2	113984833	-
Frame-shit	ENST00000322954	ENST00000355166		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000322954	ENST00000263800		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000322954	ENST00000561619		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000322954	ENST00000453182		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000539319	ENST00000355166		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000539319	ENST00000263800		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000539319	ENST00000561619		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000539319	ENST00000453182		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000379983	ENST00000355166		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000379983	ENST00000263800		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000379983	ENST00000561619		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000379983	ENST00000453182		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000560441	ENST00000355166		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000560441	ENST00000263800		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000560441	ENST00000561619		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
Frame-shit	ENST00000560441	ENST00000453182		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
intron-3CDS	ENST00000559183	ENST00000355166		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
intron-3CDS	ENST00000559183	ENST00000263800		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
intron-3CDS	ENST00000559183	ENST00000561619		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
intron-3CDS	ENST00000559183	ENST00000453182		TCGA	RV	THCA	TCGA-FY-A3R6-01A	UACA	chr15	70957001	-	LTK	chr15	41799372	-
In-frame	ENST00000288602	ENST00000355413		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
In-frame	ENST00000288602	ENST00000473247		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
5CDS-3UTR	ENST00000288602	ENST00000495028		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
5CDS-3UTR	ENST00000288602	ENST00000535825		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
5CDS-3UTR	ENST00000288602	ENST00000492693		TCGA	RV	THCA	TCGA-DJ-A2PX-01A	BRAF	chr7	140500162	-	AGK	chr7	141292946	+
Frame-shit	ENST00000313949	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000313949	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000313949	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000371098	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371098	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371098	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000371075	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371075	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371075	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371100	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371100	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371100	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000371099	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371099	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371099	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371102	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371102	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371102	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000464624	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000464624	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000464624	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000306120	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000306120	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000306120	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371095	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371095	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371095	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371085	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371085	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371085	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000354359	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000354359	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000354359	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000265620	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000265620	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000265620	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000306090	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000306090	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000306090	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000371081	ENST00000263593		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371081	ENST00000545756		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371081	ENST00000525730		TCGA	RV	THCA	TCGA-ET-A3BQ-01B	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-5UTR	ENST00000245907	ENST00000228741		TCGA	RV	THCA	TCGA-EL-A3D1-01A	C3	chr19	6677846	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000245907	ENST00000552142		TCGA	RV	THCA	TCGA-EL-A3D1-01A	C3	chr19	6677846	-	ELK3	chr12	96588323	+
intron-intron	ENST00000245907	ENST00000549529		TCGA	RV	THCA	TCGA-EL-A3D1-01A	C3	chr19	6677846	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000599668	ENST00000228741		TCGA	RV	THCA	TCGA-EL-A3D1-01A	C3	chr19	6677846	-	ELK3	chr12	96588323	+
intron-5UTR	ENST00000599668	ENST00000552142		TCGA	RV	THCA	TCGA-EL-A3D1-01A	C3	chr19	6677846	-	ELK3	chr12	96588323	+
intron-intron	ENST00000599668	ENST00000549529		TCGA	RV	THCA	TCGA-EL-A3D1-01A	C3	chr19	6677846	-	ELK3	chr12	96588323	+
intron-intron	ENST00000434271	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000434271	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000434271	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000434271	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000434271	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000434271	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000434271	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000353047	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000530640	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000531089	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000453527	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000415599	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000345125	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000533455	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000534510	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000398158		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000398165		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000359624		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000352178		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000398168		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000544202		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-intron	ENST00000525076	ENST00000470912		TCGA	RV	THCA	TCGA-DJ-A2PZ-01A	CTSB	chr8	11701829	-	CBS	chr21	44476011	-
intron-3CDS	ENST00000434271	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000434271	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000353047	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000353047	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
Frame-shit	ENST00000530640	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
5CDS-intron	ENST00000530640	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000531089	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000531089	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000453527	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000453527	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000415599	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000415599	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000345125	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000345125	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000533455	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000533455	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000534510	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000534510	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-3CDS	ENST00000525076	ENST00000330794		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
intron-intron	ENST00000525076	ENST00000511850		TCGA	RV	THCA	TCGA-4C-A93U-01A	CTSB	chr8	11701564	-	TMEM173	chr5	138862375	-
In-frame	ENST00000377194	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
In-frame	ENST00000377194	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
In-frame	ENST00000377199	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
In-frame	ENST00000377199	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
5UTR-3CDS	ENST00000498117	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
5UTR-3CDS	ENST00000498117	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000459807	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000459807	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000412687	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000412687	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000437160	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000437160	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000427689	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000427689	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000435528	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000435528	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000485666	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000485666	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000468364	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000468364	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000455861	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000455861	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000417660	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000417660	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000400720	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000400720	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000495323	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000495323	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000491158	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000491158	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000437415	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000437415	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000468047	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000468047	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000431123	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000431123	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000452265	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
intron-3CDS	ENST00000452265	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A481-01A	TRIM27	chr6	28887789	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A13K-01A	CCDC6	chr10	61554231	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A13K-01A	CCDC6	chr10	61554231	-	RET	chr10	43612032	+
intron-intron	ENST00000434271	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000434271	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000434271	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000434271	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000434271	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000434271	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000434271	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000353047	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000530640	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000531089	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000453527	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000415599	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000345125	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000533455	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000534510	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000270189		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000429089		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000220809		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000352041		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000519510		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000429710		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
intron-intron	ENST00000525076	ENST00000524009		TCGA	RV	THCA	TCGA-EM-A3FK-01A	CTSB	chr8	11701829	-	PLAT	chr8	42051245	-
5CDS-intron	ENST00000309311	ENST00000360359		TCGA	RV	THCA	TCGA-EM-A1YA-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000309311	ENST00000535627		TCGA	RV	THCA	TCGA-EM-A1YA-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000309311	ENST00000470698		TCGA	RV	THCA	TCGA-EM-A1YA-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000600720	ENST00000360359		TCGA	RV	THCA	TCGA-EM-A1YA-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000600720	ENST00000535627		TCGA	RV	THCA	TCGA-EM-A1YA-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000600720	ENST00000470698		TCGA	RV	THCA	TCGA-EM-A1YA-01A	EEF2	chr19	3976055	-	ANKS1A	chr6	34977682	+
In-frame	ENST00000265755	ENST00000389048		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000265755	ENST00000431873		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000265755	ENST00000498037		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
In-frame	ENST00000455841	ENST00000389048		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000455841	ENST00000431873		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000455841	ENST00000498037		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
In-frame	ENST00000424337	ENST00000389048		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000424337	ENST00000431873		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000424337	ENST00000498037		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
In-frame	ENST00000476977	ENST00000389048		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000476977	ENST00000431873		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000476977	ENST00000498037		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
3UTR-3CDS	ENST00000489094	ENST00000389048		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
3UTR-intron	ENST00000489094	ENST00000431873		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
3UTR-intron	ENST00000489094	ENST00000498037		TCGA	RV	THCA	TCGA-EL-A4KD-01A	GTF2IRD1	chr7	73935627	+	ALK	chr2	29446394	-
Frame-shit	ENST00000268712	ENST00000366691		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
5CDS-intron	ENST00000268712	ENST00000493528		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
Frame-shit	ENST00000395851	ENST00000366691		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
5CDS-intron	ENST00000395851	ENST00000493528		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
intron-3CDS	ENST00000395857	ENST00000366691		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
intron-intron	ENST00000395857	ENST00000493528		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
Frame-shit	ENST00000395848	ENST00000366691		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
5CDS-intron	ENST00000395848	ENST00000493528		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
intron-3CDS	ENST00000583226	ENST00000366691		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
intron-intron	ENST00000583226	ENST00000493528		TCGA	RV	THCA	TCGA-EM-A2OX-01A	NCOR1	chr17	16097776	-	RHOU	chr1	228873420	+
In-frame	ENST00000255977	ENST00000288602		TCGA	RV	THCA	TCGA-J8-A3O1-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000437223	ENST00000288602		TCGA	RV	THCA	TCGA-J8-A3O1-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140487384	-
In-frame	ENST00000474576	ENST00000288602		TCGA	RV	THCA	TCGA-J8-A3O1-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000480552	ENST00000288602		TCGA	RV	THCA	TCGA-J8-A3O1-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140487384	-
In-frame	ENST00000443720	ENST00000288602		TCGA	RV	THCA	TCGA-J8-A3O1-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000481705	ENST00000288602		TCGA	RV	THCA	TCGA-J8-A3O1-01A	MKRN1	chr7	140158807	-	BRAF	chr7	140487384	-
In-frame	ENST00000438493	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000438493	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3H3-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
5CDS-5UTR	ENST00000313949	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000313949	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000313949	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000371098	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000371098	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-intron	ENST00000371098	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371075	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371075	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000371075	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371100	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371100	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000371100	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000371099	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000371099	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-intron	ENST00000371099	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371102	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371102	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000371102	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000464624	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000464624	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000464624	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000306120	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000306120	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-intron	ENST00000306120	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371095	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371095	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000371095	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371085	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000371085	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000371085	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000354359	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000354359	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000354359	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000265620	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000265620	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000265620	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000306090	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000306090	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000306090	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000371081	ENST00000228741		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000371081	ENST00000552142		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-intron	ENST00000371081	ENST00000549529		TCGA	RV	THCA	TCGA-IM-A3EB-01A	GNAS	chr20	57486247	+	ELK3	chr12	96588323	+
intron-3UTR	ENST00000252590	ENST00000318789		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000252590	ENST00000475937		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000493089		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000484350		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000318779		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000491238		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000498215		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000468577		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000252590	ENST00000472382		TCGA	RV	THCA	TCGA-DJ-A3UK-01A	PLVAP	chr19	17462264	-	FOXP1	chr3	71007472	-
In-frame	ENST00000288602	ENST00000255194		TCGA	RV	THCA	TCGA-EL-A3T0-01A	BRAF	chr7	140494108	-	AP3B1	chr5	77335098	-
In-frame	ENST00000288602	ENST00000519295		TCGA	RV	THCA	TCGA-EL-A3T0-01A	BRAF	chr7	140494108	-	AP3B1	chr5	77335098	-
5CDS-5UTR	ENST00000288602	ENST00000523204		TCGA	RV	THCA	TCGA-EL-A3T0-01A	BRAF	chr7	140494108	-	AP3B1	chr5	77335098	-
In-frame	ENST00000430069	ENST00000355710		TCGA	RV	THCA	TCGA-ET-A40R-01A	TBL1XR1	chr3	176765088	-	RET	chr10	43612032	+
In-frame	ENST00000430069	ENST00000340058		TCGA	RV	THCA	TCGA-ET-A40R-01A	TBL1XR1	chr3	176765088	-	RET	chr10	43612032	+
Frame-shit	ENST00000457928	ENST00000355710		TCGA	RV	THCA	TCGA-ET-A40R-01A	TBL1XR1	chr3	176765088	-	RET	chr10	43612032	+
Frame-shit	ENST00000457928	ENST00000340058		TCGA	RV	THCA	TCGA-ET-A40R-01A	TBL1XR1	chr3	176765088	-	RET	chr10	43612032	+
Frame-shit	ENST00000388825	ENST00000369002		TCGA	RV	THCA	TCGA-BJ-A2N8-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000388825	ENST00000460009		TCGA	RV	THCA	TCGA-BJ-A2N8-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000521722	ENST00000369002		TCGA	RV	THCA	TCGA-BJ-A2N8-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-intron	ENST00000521722	ENST00000460009		TCGA	RV	THCA	TCGA-BJ-A2N8-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000517973	ENST00000369002		TCGA	RV	THCA	TCGA-BJ-A2N8-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
intron-intron	ENST00000517973	ENST00000460009		TCGA	RV	THCA	TCGA-BJ-A2N8-01A	GPX3	chr5	150408548	+	SEC63	chr6	108214782	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-BJ-A0ZJ-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-BJ-A0ZJ-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-intron	ENST00000309311	ENST00000371917		TCGA	RV	THCA	TCGA-ET-A3BO-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
5CDS-intron	ENST00000309311	ENST00000493140		TCGA	RV	THCA	TCGA-ET-A3BO-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000600720	ENST00000371917		TCGA	RV	THCA	TCGA-ET-A3BO-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
intron-intron	ENST00000600720	ENST00000493140		TCGA	RV	THCA	TCGA-ET-A3BO-01A	EEF2	chr19	3976055	-	ARFGEF2	chr20	47615777	+
In-frame	ENST00000369061	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
In-frame	ENST00000369061	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369061	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369061	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000369061	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000357555	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000357555	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000357555	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000357555	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000357555	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000358487	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000358487	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000358487	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000358487	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000358487	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000356226	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000356226	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000356226	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000356226	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000356226	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000369060	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000369060	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369060	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369060	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000369060	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000369059	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000369059	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369059	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369059	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000369059	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
In-frame	ENST00000346997	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
In-frame	ENST00000346997	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000346997	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000346997	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000346997	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000457416	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000457416	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000457416	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000457416	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000457416	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000351936	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000351936	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000351936	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000351936	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000351936	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000360144	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000360144	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000360144	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000360144	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000360144	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
In-frame	ENST00000369056	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
In-frame	ENST00000369056	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369056	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000369056	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000369056	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-3CDS	ENST00000490349	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-3CDS	ENST00000490349	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-5UTR	ENST00000490349	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-5UTR	ENST00000490349	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-3UTR	ENST00000490349	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-3CDS	ENST00000359354	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-3CDS	ENST00000359354	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-5UTR	ENST00000359354	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-5UTR	ENST00000359354	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-3UTR	ENST00000359354	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000478859	ENST00000380550		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
Frame-shit	ENST00000478859	ENST00000398395		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000478859	ENST00000380567		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-5UTR	ENST00000478859	ENST00000340096		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
5CDS-3UTR	ENST00000478859	ENST00000490265		TCGA	RV	THCA	TCGA-BJ-A0Z0-01A	FGFR2	chr10	123243212	-	OFD1	chrX	13754597	+
intron-intron	ENST00000532456	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000532456	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000532456	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000539648	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000539648	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000539648	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000528499	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000528499	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000528499	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000263574	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000263574	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000263574	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000345598	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000345598	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000345598	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000338167	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000338167	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
intron-intron	ENST00000338167	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000278756	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000278756	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000278756	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000543137	ENST00000372285		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000543137	ENST00000372276		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
5CDS-intron	ENST00000543137	ENST00000489304		TCGA	RV	THCA	TCGA-EL-A3TB-01A	APLP2	chr11	130014699	+	CD40	chr20	44754189	+
In-frame	ENST00000288602	ENST00000351797		TCGA	RV	THCA	TCGA-ET-A3BN-01A	BRAF	chr7	140482821	-	FAM114A2	chr5	153382529	-
In-frame	ENST00000288602	ENST00000522858		TCGA	RV	THCA	TCGA-ET-A3BN-01A	BRAF	chr7	140482821	-	FAM114A2	chr5	153382529	-
In-frame	ENST00000288602	ENST00000520667		TCGA	RV	THCA	TCGA-ET-A3BN-01A	BRAF	chr7	140482821	-	FAM114A2	chr5	153382529	-
5CDS-intron	ENST00000288602	ENST00000518946		TCGA	RV	THCA	TCGA-ET-A3BN-01A	BRAF	chr7	140482821	-	FAM114A2	chr5	153382529	-
5CDS-intron	ENST00000288602	ENST00000520313		TCGA	RV	THCA	TCGA-ET-A3BN-01A	BRAF	chr7	140482821	-	FAM114A2	chr5	153382529	-
In-frame	ENST00000538486	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000538486	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000538486	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000538486	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000397323	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000397323	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000397323	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000320203	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000320203	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000320203	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000287771	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000287771	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000287771	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000339877	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000339877	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000339877	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000517860	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000517860	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000517860	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520161	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000520161	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000520161	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000519647	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000519647	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000519647	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
In-frame	ENST00000520191	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000520191	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-5UTR	ENST00000520191	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000394480		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000557856		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000357724		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000355254		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000360948		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000542733		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000558676		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-3CDS	ENST00000520916	ENST00000317501		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000520916	ENST00000558306		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
intron-5UTR	ENST00000520916	ENST00000540489		TCGA	RV	THCA	TCGA-ET-A39L-01A	RBPMS	chr8	30361953	+	NTRK3	chr15	88576276	-
5CDS-intron	ENST00000313949	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000313949	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000313949	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000313949	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371098	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371098	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371098	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371098	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371075	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371075	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371075	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371075	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371100	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371100	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371100	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371100	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371099	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371099	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371099	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371099	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371102	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371102	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371102	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371102	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000464624	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000464624	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000464624	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000464624	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000306120	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000306120	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000306120	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000306120	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371095	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371095	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371095	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371095	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371085	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000371085	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371085	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000371085	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000354359	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000354359	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000354359	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000354359	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000265620	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000265620	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000265620	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000265620	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000306090	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-intron	ENST00000306090	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000306090	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
5CDS-3UTR	ENST00000306090	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371081	ENST00000371754		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-intron	ENST00000371081	ENST00000469991		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371081	ENST00000371752		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
intron-3UTR	ENST00000371081	ENST00000396105		TCGA	RV	THCA	TCGA-J8-A3YD-01A	GNAS	chr20	57486247	+	ZNFX1	chr20	47863418	-
In-frame	ENST00000438493	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000438493	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A3KN-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000288602	ENST00000309930		TCGA	RV	THCA	TCGA-FY-A40N-01A	BRAF	chr7	140624366	-	C7orf10	chr7	40789033	+
In-frame	ENST00000288602	ENST00000401647		TCGA	RV	THCA	TCGA-FY-A40N-01A	BRAF	chr7	140624366	-	C7orf10	chr7	40789033	+
In-frame	ENST00000288602	ENST00000335693		TCGA	RV	THCA	TCGA-FY-A40N-01A	BRAF	chr7	140624366	-	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000288602	ENST00000464028		TCGA	RV	THCA	TCGA-FY-A40N-01A	BRAF	chr7	140624366	-	C7orf10	chr7	40789033	+
5CDS-intron	ENST00000288602	ENST00000540834		TCGA	RV	THCA	TCGA-FY-A40N-01A	BRAF	chr7	140624366	-	C7orf10	chr7	40789033	+
In-frame	ENST00000438493	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000438493	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000355710		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000340058		TCGA	RV	THCA	TCGA-EM-A2CU-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-ET-A3DR-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-ET-A3DR-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
intron-3CDS	ENST00000318522	ENST00000389048		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000318522	ENST00000431873		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000318522	ENST00000498037		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-3CDS	ENST00000402711	ENST00000389048		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000402711	ENST00000431873		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000402711	ENST00000498037		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-3CDS	ENST00000482660	ENST00000389048		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000482660	ENST00000431873		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000482660	ENST00000498037		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
In-frame	ENST00000401738	ENST00000389048		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000401738	ENST00000431873		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
5CDS-intron	ENST00000401738	ENST00000498037		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-3CDS	ENST00000453191	ENST00000389048		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000453191	ENST00000431873		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
intron-intron	ENST00000453191	ENST00000498037		TCGA	RV	THCA	TCGA-E8-A432-01A	EML4	chr2	42492091	+	ALK	chr2	29449940	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-DJ-A3V3-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-DJ-A3V3-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-DJ-A4UQ-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-DJ-A4UQ-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
Frame-shit	ENST00000233813	ENST00000409359		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
Frame-shit	ENST00000233813	ENST00000326016		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
Frame-shit	ENST00000233813	ENST00000392953		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000233813	ENST00000428230		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000233813	ENST00000525839		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000233813	ENST00000409303		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000233813	ENST00000355771		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
5CDS-intron	ENST00000233813	ENST00000439368		TCGA	RV	THCA	TCGA-FK-A3SH-01A	IGFBP5	chr2	217536828	-	ARHGEF4	chr2	131674224	+
In-frame	ENST00000438493	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000438493	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000452682	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000498586	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000430396	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374087	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000414907	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000344348	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000374082	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000355710		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000443446	ENST00000340058		TCGA	RV	THCA	TCGA-CE-A482-01A	NCOA4	chr10	51582939	+	RET	chr10	43612032	+
In-frame	ENST00000288602	ENST00000354725		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	BRAF	chr7	140487348	-	SND1	chr7	127724776	+
5CDS-intron	ENST00000288602	ENST00000467238		TCGA	RV	THCA	TCGA-EL-A3ZK-01A	BRAF	chr7	140487348	-	SND1	chr7	127724776	+
5CDS-intron	ENST00000377795	ENST00000216297		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
5CDS-intron	ENST00000377795	ENST00000555943		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000353334	ENST00000216297		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000353334	ENST00000555943		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524315	ENST00000216297		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000524315	ENST00000555943		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000009530	ENST00000216297		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
intron-intron	ENST00000009530	ENST00000555943		TCGA	RV	THCA	TCGA-ET-A40S-01A	CD74	chr5	149781200	-	SUPT16H	chr14	21829491	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-DO-A1JZ-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-E3-A3E0-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-E3-A3E0-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-intron	ENST00000394480	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000394480	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000557856	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000357724	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000355254	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000360948	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000542733	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000558676	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000317501	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
intron-intron	ENST00000558306	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000538486		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000397323		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000320203		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000287771		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000339877		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000517860		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000520161		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000519647		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000520191		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
5CDS-intron	ENST00000540489	ENST00000520916		TCGA	RV	THCA	TCGA-ET-A39L-01A	NTRK3	chr15	88669502	-	RBPMS	chr8	30402011	+
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-EL-A3TB-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-EL-A3TB-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000368533	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368533	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368533	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368533	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000368533	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-3CDS	ENST00000469717	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5UTR-intron	ENST00000469717	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000330188	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000330188	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341485	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000341485	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000341372	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000341372	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000328159	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000328159	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000271850	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000271850	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000302206	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000302206	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368531	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000368531	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000323144	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000323144	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000392302		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000368196		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000524377		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
In-frame	ENST00000368530	ENST00000358660		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000368530	ENST00000531606		TCGA	RV	THCA	TCGA-EL-A3D4-01A	TPM3	chr1	154142876	-	NTRK1	chr1	156844363	+
intron-intron	ENST00000381395	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381395	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381395	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381406	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381406	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381406	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000416167	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000416167	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000416167	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000300632	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000300632	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
5CDS-intron	ENST00000300632	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000434045	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000434045	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000434045	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381392	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381392	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381392	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381389	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381389	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000381389	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000418738	ENST00000261531		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000418738	ENST00000554775		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
intron-intron	ENST00000418738	ENST00000555761		TCGA	RV	THCA	TCGA-BJ-A291-01A	IGF2	chr11	2150348	-	SNW1	chr14	78189203	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-DJ-A4V5-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-DJ-A4V5-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-5UTR	ENST00000348715	ENST00000312233		TCGA	RV	THCA	TCGA-BJ-A291-01A	PAX8	chr2	114035947	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000397647	ENST00000312233		TCGA	RV	THCA	TCGA-BJ-A291-01A	PAX8	chr2	114035947	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000263335	ENST00000312233		TCGA	RV	THCA	TCGA-BJ-A291-01A	PAX8	chr2	114035947	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000429538	ENST00000312233		TCGA	RV	THCA	TCGA-BJ-A291-01A	PAX8	chr2	114035947	-	GLIS1	chr1	54065951	-
5CDS-5UTR	ENST00000263334	ENST00000312233		TCGA	RV	THCA	TCGA-BJ-A291-01A	PAX8	chr2	114035947	-	GLIS1	chr1	54065951	-
5CDS-intron	ENST00000383329	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000383329	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000383329	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000383329	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000383329	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000376228	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000376228	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000376228	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000376228	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
5CDS-intron	ENST00000376228	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000423509	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000423509	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000423509	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000423509	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000423509	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000430940	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000430940	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000430940	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000430940	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000430940	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422726	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422726	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422726	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422726	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422726	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000424832	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000424832	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000424832	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000424832	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000424832	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458192	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458192	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458192	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458192	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458192	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422921	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422921	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422921	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422921	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000422921	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000456487	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000456487	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000456487	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000456487	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000456487	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000420206	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000420206	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000420206	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000420206	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000420206	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495725	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495725	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495725	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495725	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495725	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419135	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419135	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419135	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419135	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419135	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000433153	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000433153	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000433153	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000433153	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000433153	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000429840	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000429840	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000429840	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000429840	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000429840	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000457903	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000457903	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000457903	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000457903	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000457903	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000479546	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000479546	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000479546	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000479546	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000479546	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400395	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400395	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400395	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400395	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400395	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383323	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383323	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383323	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383323	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383323	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000434884	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000434884	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000434884	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000434884	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000434884	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400394	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400394	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400394	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400394	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400394	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000494871	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000494871	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000494871	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000494871	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000494871	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000453809	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000453809	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000453809	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000453809	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000453809	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000414249	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000414249	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000414249	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000414249	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000414249	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419590	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419590	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419590	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419590	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000419590	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000438171	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000438171	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000438171	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000438171	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000438171	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000552865	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000552865	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000552865	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000552865	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000552865	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495898	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495898	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495898	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495898	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000495898	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383483	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383483	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383483	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383483	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383483	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383487	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383487	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383487	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383487	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000383487	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458668	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458668	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458668	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458668	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000458668	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400341	ENST00000264818		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400341	ENST00000524462		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400341	ENST00000525621		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400341	ENST00000529370		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
intron-intron	ENST00000400341	ENST00000529422		TCGA	RV	THCA	TCGA-E8-A417-01A	HLA-C	chr6	31236528	-	TYK2	chr19	10491352	-
In-frame	ENST00000320672	ENST00000392302		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000320672	ENST00000368196		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000320672	ENST00000524377		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000320672	ENST00000358660		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000320672	ENST00000531606		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000509053	ENST00000392302		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000509053	ENST00000368196		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000509053	ENST00000524377		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000509053	ENST00000358660		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000509053	ENST00000531606		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000514493	ENST00000392302		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000514493	ENST00000368196		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000514493	ENST00000524377		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000514493	ENST00000358660		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000514493	ENST00000531606		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000510060	ENST00000392302		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000510060	ENST00000368196		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000510060	ENST00000524377		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5UTR-3CDS	ENST00000510060	ENST00000358660		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5UTR-intron	ENST00000510060	ENST00000531606		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000505980	ENST00000392302		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000505980	ENST00000368196		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000505980	ENST00000524377		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000505980	ENST00000358660		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000505980	ENST00000531606		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000515395	ENST00000392302		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000515395	ENST00000368196		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000515395	ENST00000524377		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000515395	ENST00000358660		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
5CDS-intron	ENST00000515395	ENST00000531606		TCGA	RV	THCA	TCGA-CE-A3MD-01A	SSBP2	chr5	80742687	-	NTRK1	chr1	156845312	+
In-frame	ENST00000372391	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A69K-01A	DLG5	chr10	79588640	-	RET	chr10	43612032	+
In-frame	ENST00000372391	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A69K-01A	DLG5	chr10	79588640	-	RET	chr10	43612032	+
In-frame	ENST00000372388	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A69K-01A	DLG5	chr10	79588640	-	RET	chr10	43612032	+
In-frame	ENST00000372388	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A69K-01A	DLG5	chr10	79588640	-	RET	chr10	43612032	+
intron-3CDS	ENST00000459739	ENST00000355710		TCGA	RV	THCA	TCGA-DE-A69K-01A	DLG5	chr10	79588640	-	RET	chr10	43612032	+
intron-3CDS	ENST00000459739	ENST00000340058		TCGA	RV	THCA	TCGA-DE-A69K-01A	DLG5	chr10	79588640	-	RET	chr10	43612032	+
Frame-shit	ENST00000313949	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000313949	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000313949	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000371098	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371098	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371098	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000371075	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371075	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371075	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371100	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371100	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371100	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000371099	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371099	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371099	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371102	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371102	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371102	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000464624	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000464624	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000464624	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000306120	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000306120	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000306120	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371095	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371095	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371095	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000371085	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371085	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000371085	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000354359	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000354359	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000354359	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000265620	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000265620	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000265620	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
In-frame	ENST00000306090	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000306090	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000306090	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000371081	ENST00000263593		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371081	ENST00000545756		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
intron-intron	ENST00000371081	ENST00000525730		TCGA	RV	THCA	TCGA-BJ-A192-01A	GNAS	chr20	57486241	+	SIAE	chr11	124543777	-
Frame-shit	ENST00000379056	ENST00000263593		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000379056	ENST00000545756		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
5CDS-intron	ENST00000379056	ENST00000525730		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000529421	ENST00000263593		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000529421	ENST00000545756		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000529421	ENST00000525730		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000530705	ENST00000263593		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000530705	ENST00000545756		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000530705	ENST00000525730		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000379060	ENST00000263593		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000379060	ENST00000545756		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000379060	ENST00000525730		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000379055	ENST00000263593		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000379055	ENST00000545756		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000379055	ENST00000525730		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-3CDS	ENST00000309246	ENST00000263593		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000309246	ENST00000545756		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000309246	ENST00000525730		TCGA	RV	THCA	TCGA-E3-A3E2-01A	TPT1	chr13	45911008	-	SIAE	chr11	124543777	-
intron-intron	ENST00000532456	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000532456	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000539648	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000539648	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000528499	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000528499	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000263574	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000263574	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000345598	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000345598	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000338167	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
intron-intron	ENST00000338167	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000278756	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000278756	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000543137	ENST00000322349		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
5CDS-intron	ENST00000543137	ENST00000547833		TCGA	RV	THCA	TCGA-BJ-A45I-01A	APLP2	chr11	130014699	+	EEA1	chr12	93229203	-
In-frame	ENST00000263102	ENST00000355710		TCGA	RV	THCA	TCGA-FK-A3SE-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	RV	THCA	TCGA-FK-A3SE-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-5UTR	ENST00000595085	ENST00000539627		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000604123		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000413014		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000392002		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000436170		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000447302		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000544232		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000542945		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000595085	ENST00000356385		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000539627		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000604123		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000413014		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000392002		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000436170		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000447302		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000544232		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000542945		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000269980	ENST00000356385		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000539627		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000604123		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000413014		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000392002		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000436170		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000447302		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000544232		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000542945		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000457836	ENST00000356385		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000539627		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000604123		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000413014		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000392002		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000436170		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000447302		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000544232		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000542945		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
3UTR-5UTR	ENST00000535632	ENST00000356385		TCGA	RV	THCA	TCGA-KS-A4I1-01A	BCKDHA	chr19	41925201	+	TMEM91	chr19	41884186	+
In-frame	ENST00000545844	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000567887	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000372915	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000361689	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000539005	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000317713	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000564288	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
In-frame	ENST00000289893	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000536367	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000484793	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000602421	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000476350	ENST00000288602		TCGA	RV	THCA	TCGA-DE-A0Y2-01A	MACF1	chr1	39896580	+	BRAF	chr7	140487384	-
intron-3CDS	ENST00000418917	ENST00000392302		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000418917	ENST00000368196		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000418917	ENST00000524377		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000418917	ENST00000358660		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-intron	ENST00000418917	ENST00000531606		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000490574	ENST00000392302		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000490574	ENST00000368196		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000490574	ENST00000524377		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000490574	ENST00000358660		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000490574	ENST00000531606		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000240851	ENST00000392302		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000240851	ENST00000368196		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000240851	ENST00000524377		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
In-frame	ENST00000240851	ENST00000358660		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000240851	ENST00000531606		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000476228	ENST00000392302		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000476228	ENST00000368196		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000476228	ENST00000524377		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000476228	ENST00000358660		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-intron	ENST00000476228	ENST00000531606		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000481203	ENST00000392302		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000481203	ENST00000368196		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000481203	ENST00000524377		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000481203	ENST00000358660		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
intron-intron	ENST00000481203	ENST00000531606		TCGA	RV	THCA	TCGA-EM-A3AO-01A	TFG	chr3	100455560	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000388825	ENST00000513761		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000388825	ENST00000347613		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000388825	ENST00000360642		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000388825	ENST00000504131		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000388825	ENST00000506924		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000521722	ENST00000513761		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000521722	ENST00000347613		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000521722	ENST00000360642		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000521722	ENST00000504131		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000521722	ENST00000506924		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000517973	ENST00000513761		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000517973	ENST00000347613		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000517973	ENST00000360642		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000517973	ENST00000504131		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000517973	ENST00000506924		TCGA	RV	THCA	TCGA-EM-A4FK-01A	GPX3	chr5	150408548	+	CLCN3	chr4	170623929	+
In-frame	ENST00000348715	ENST00000397063		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000348715	ENST00000397062		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000348715	ENST00000446151		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000348715	ENST00000464747		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-3UTR	ENST00000348715	ENST00000423513		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000397647	ENST00000397063		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000397647	ENST00000397062		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000397647	ENST00000446151		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000397647	ENST00000464747		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-3UTR	ENST00000397647	ENST00000423513		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000263335	ENST00000397063		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000263335	ENST00000397062		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000263335	ENST00000446151		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000263335	ENST00000464747		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-3UTR	ENST00000263335	ENST00000423513		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
Frame-shit	ENST00000429538	ENST00000397063		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
Frame-shit	ENST00000429538	ENST00000397062		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000429538	ENST00000446151		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000429538	ENST00000464747		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-3UTR	ENST00000429538	ENST00000423513		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000263334	ENST00000397063		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
In-frame	ENST00000263334	ENST00000397062		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000263334	ENST00000446151		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000263334	ENST00000464747		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-3UTR	ENST00000263334	ENST00000423513		TCGA	RV	THCA	TCGA-EM-A2CP-01A	PAX8	chr2	113999128	-	NFE2L2	chr2	178097311	-
5CDS-intron	ENST00000255409	ENST00000398158		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000255409	ENST00000398165		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000255409	ENST00000359624		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000255409	ENST00000352178		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000255409	ENST00000398168		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000255409	ENST00000544202		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000255409	ENST00000470912		TCGA	RV	THCA	TCGA-EM-A3SU-01A	CHI3L1	chr1	203148059	-	CBS	chr21	44476011	-
Frame-shit	ENST00000313949	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000313949	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000371098	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-intron	ENST00000371098	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000371075	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000371075	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000371100	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000371100	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000371099	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-intron	ENST00000371099	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000371102	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000371102	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
Frame-shit	ENST00000464624	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000464624	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000306120	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-intron	ENST00000306120	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000371095	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000371095	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000371085	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000371085	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000354359	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000354359	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000265620	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000265620	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
In-frame	ENST00000306090	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000306090	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000371081	ENST00000369002		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-intron	ENST00000371081	ENST00000460009		TCGA	RV	THCA	TCGA-EM-A3OB-01A	GNAS	chr20	57486241	+	SEC63	chr6	108214782	-
intron-intron	ENST00000458659	ENST00000233057		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458659	ENST00000395127		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000458659	ENST00000405334		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000501704	ENST00000233057		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000501704	ENST00000395127		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000501704	ENST00000405334		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000261489	ENST00000233057		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000261489	ENST00000395127		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
5CDS-intron	ENST00000261489	ENST00000405334		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000460842	ENST00000233057		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000460842	ENST00000395127		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
intron-intron	ENST00000460842	ENST00000405334		TCGA	RV	THCA	TCGA-EL-A3T7-01A	TSC22D1	chr13	45007661	-	EIF2AK2	chr2	37342384	-
Frame-shit	ENST00000366610	ENST00000392302		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000366610	ENST00000368196		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000366610	ENST00000524377		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000366610	ENST00000358660		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000366610	ENST00000531606		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000392302		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000368196		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000524377		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000358660		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-intron	ENST00000366609	ENST00000531606		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000392302		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000368196		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000524377		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000358660		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-intron	ENST00000491430	ENST00000531606		TCGA	RV	THCA	TCGA-DJ-A4UP-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000560302	ENST00000355710		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
intron-3CDS	ENST00000560302	ENST00000340058		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
In-frame	ENST00000394518	ENST00000355710		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
In-frame	ENST00000394518	ENST00000340058		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
In-frame	ENST00000361243	ENST00000355710		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
In-frame	ENST00000361243	ENST00000340058		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000560579	ENST00000355710		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
3UTR-3CDS	ENST00000560579	ENST00000340058		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
In-frame	ENST00000394510	ENST00000355710		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
In-frame	ENST00000394510	ENST00000340058		TCGA	RV	THCA	TCGA-FK-A3SG-01A	AKAP13	chr15	86284726	+	RET	chr10	43612032	+
5CDS-5UTR	ENST00000348715	ENST00000397010		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000309576		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397015		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397012		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397026		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397000		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000539812		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000287820		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397010		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000309576		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397015		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397012		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397026		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397000		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000539812		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000287820		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397010		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000309576		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397015		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397012		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397026		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397000		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000539812		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000287820		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397010		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000309576		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397015		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397012		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397026		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397000		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000539812		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000287820		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397010		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000309576		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397015		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397012		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397026		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397000		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000539812		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000287820		TCGA	RV	THCA	TCGA-ET-A39N-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-intron	ENST00000313949	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000313949	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000313949	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000313949	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000313949	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371098	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371098	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371098	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371098	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371098	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371075	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371075	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371075	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371075	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371075	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371100	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371100	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371100	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371100	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371100	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371099	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371099	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371099	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371099	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371099	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371102	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371102	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371102	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371102	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371102	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000464624	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000464624	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000464624	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000464624	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000464624	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000306120	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000306120	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000306120	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000306120	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000306120	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371095	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371095	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371095	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371095	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371095	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371085	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371085	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371085	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371085	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000371085	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354359	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354359	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354359	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354359	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000354359	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265620	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265620	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265620	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265620	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000265620	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000306090	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000306090	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000306090	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000306090	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000306090	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371081	ENST00000513761		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371081	ENST00000347613		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371081	ENST00000360642		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371081	ENST00000504131		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000371081	ENST00000506924		TCGA	RV	THCA	TCGA-ET-A25I-01A	GNAS	chr20	57486241	+	CLCN3	chr4	170623929	+
5CDS-5UTR	ENST00000348715	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0YZ-01A	PAX8	chr2	113994178	-	PPARG	chr3	12421203	+
intron-intron	ENST00000532456	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000532456	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000539648	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000539648	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000528499	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000528499	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000263574	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000263574	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000345598	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000345598	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000338167	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
intron-intron	ENST00000338167	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000278756	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000278756	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000543137	ENST00000313164		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
5CDS-intron	ENST00000543137	ENST00000494960		TCGA	RV	THCA	TCGA-DJ-A3V9-01A	APLP2	chr11	130014699	+	C7	chr5	40954982	+
In-frame	ENST00000306052	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000306052	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000306052	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000306052	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000306052	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000371454	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000371454	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000371454	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000371454	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000371454	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
Frame-shit	ENST00000465675	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
Frame-shit	ENST00000465675	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
Frame-shit	ENST00000465675	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
Frame-shit	ENST00000465675	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
Frame-shit	ENST00000465675	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000354412	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000354412	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000354412	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000354412	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000354412	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000347547	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000347547	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000347547	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000347547	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
In-frame	ENST00000347547	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
5UTR-3CDS	ENST00000460214	ENST00000348715		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
5UTR-3CDS	ENST00000460214	ENST00000397647		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
5UTR-3CDS	ENST00000460214	ENST00000263335		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
5UTR-3CDS	ENST00000460214	ENST00000429538		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
5UTR-3CDS	ENST00000460214	ENST00000263334		TCGA	RV	THCA	TCGA-BJ-A291-01A	LRP8	chr1	53723991	-	PAX8	chr2	114004496	-
5CDS-intron	ENST00000496817	ENST00000404460		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000303908		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409158		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000403716		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000234115		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000439822		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000487980		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000438882		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000538982		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409612		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409279		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000404460		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000303908		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409158		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000403716		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000234115		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000439822		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000487980		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000438882		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000538982		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409612		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409279		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000404460		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000303908		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409158		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000403716		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000234115		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000439822		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000487980		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000438882		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000538982		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409612		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409279		TCGA	RV	THCA	TCGA-CE-A483-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-5UTR	ENST00000348715	ENST00000397010		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000309576		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397015		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397012		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397026		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397000		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000539812		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000287820		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397010		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000309576		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397015		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397012		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397026		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397000		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000539812		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000287820		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397010		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000309576		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397015		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397012		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397026		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397000		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000539812		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000287820		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397010		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000309576		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397015		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397012		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397026		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397000		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000539812		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000287820		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397010		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000309576		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397015		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397012		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397026		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397000		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000539812		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000287820		TCGA	RV	THCA	TCGA-EM-A3AJ-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
In-frame	ENST00000376929	ENST00000392302		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000376929	ENST00000368196		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000376929	ENST00000524377		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000376929	ENST00000358660		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000376929	ENST00000531606		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000506690	ENST00000392302		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000506690	ENST00000368196		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000506690	ENST00000524377		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000506690	ENST00000358660		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
intron-intron	ENST00000506690	ENST00000531606		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000389805	ENST00000392302		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000389805	ENST00000368196		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000389805	ENST00000524377		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000389805	ENST00000358660		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000389805	ENST00000531606		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000402874	ENST00000392302		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000402874	ENST00000368196		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000402874	ENST00000524377		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000402874	ENST00000358660		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000402874	ENST00000531606		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000510187	ENST00000392302		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000510187	ENST00000368196		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000510187	ENST00000524377		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000510187	ENST00000358660		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000510187	ENST00000531606		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360718	ENST00000392302		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360718	ENST00000368196		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360718	ENST00000524377		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
In-frame	ENST00000360718	ENST00000358660		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000360718	ENST00000531606		TCGA	RV	THCA	TCGA-ET-A40S-01A	SQSTM1	chr5	179252226	+	NTRK1	chr1	156844363	+
5CDS-5UTR	ENST00000348715	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397010		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000309576		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397015		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397012		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397026		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397000		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000539812		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000287820		TCGA	RV	THCA	TCGA-BJ-A0ZF-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397010		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000309576		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397015		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397012		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397026		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000397000		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000539812		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000348715	ENST00000287820		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397010		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000309576		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397015		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397012		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397026		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000397000		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000539812		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000397647	ENST00000287820		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397010		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000309576		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397015		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397012		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397026		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000397000		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000539812		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
intron-5UTR	ENST00000263335	ENST00000287820		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397010		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000309576		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397015		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397012		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397026		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000397000		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000539812		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000429538	ENST00000287820		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397010		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000309576		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397015		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397012		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397026		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000397000		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000539812		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-5UTR	ENST00000263334	ENST00000287820		TCGA	RV	THCA	TCGA-DE-A4M9-01A	PAX8	chr2	113992971	-	PPARG	chr3	12421203	+
5CDS-intron	ENST00000496817	ENST00000404460		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000303908		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409158		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000403716		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000234115		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000439822		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000487980		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000438882		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000538982		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409612		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000496817	ENST00000409279		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000404460		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000303908		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409158		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000403716		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000234115		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000439822		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000487980		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000438882		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000538982		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409612		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368719	ENST00000409279		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000404460		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000303908		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409158		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000403716		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000234115		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000439822		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000487980		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000438882		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000538982		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409612		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000368720	ENST00000409279		TCGA	RV	THCA	TCGA-BJ-A45I-01A	S100A6	chr1	153507075	-	PLEKHB2	chr2	131876464	+
In-frame	ENST00000397752	ENST00000418917		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000397752	ENST00000490574		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000397752	ENST00000240851		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000397752	ENST00000476228		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
5CDS-intron	ENST00000397752	ENST00000481203		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000318493	ENST00000418917		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000318493	ENST00000490574		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000318493	ENST00000240851		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
In-frame	ENST00000318493	ENST00000476228		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
5CDS-intron	ENST00000318493	ENST00000481203		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000436117	ENST00000418917		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000436117	ENST00000490574		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000436117	ENST00000240851		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000436117	ENST00000476228		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-intron	ENST00000436117	ENST00000481203		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000495962	ENST00000418917		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000495962	ENST00000490574		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000495962	ENST00000240851		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000495962	ENST00000476228		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-intron	ENST00000495962	ENST00000481203		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000539704	ENST00000418917		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000539704	ENST00000490574		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000539704	ENST00000240851		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000539704	ENST00000476228		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-intron	ENST00000539704	ENST00000481203		TCGA	RV	THCA	TCGA-FK-A3S3-01A	MET	chr7	116412043	+	TFG	chr3	100455420	+
intron-3CDS	ENST00000607874	ENST00000257017		TCGA	LD	THCA	TCGA-BJ-A0Z2-01A	BCORL1	chrX	129173257	+	RAB33A	chrX	129318259	+
Frame-shit	ENST00000218147	ENST00000257017		TCGA	LD	THCA	TCGA-BJ-A0Z2-01A	BCORL1	chrX	129173257	+	RAB33A	chrX	129318259	+
Frame-shit	ENST00000359304	ENST00000257017		TCGA	LD	THCA	TCGA-BJ-A0Z2-01A	BCORL1	chrX	129173257	+	RAB33A	chrX	129318259	+
Frame-shit	ENST00000303743	ENST00000257017		TCGA	LD	THCA	TCGA-BJ-A0Z2-01A	BCORL1	chrX	129173257	+	RAB33A	chrX	129318259	+
Frame-shit	ENST00000540052	ENST00000257017		TCGA	LD	THCA	TCGA-BJ-A0Z2-01A	BCORL1	chrX	129173257	+	RAB33A	chrX	129318259	+
5UTR-3CDS	ENST00000536122	ENST00000262144		TCGA	LD	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90086176	+	WDR59	chr16	74976724	-
5UTR-intron	ENST00000536122	ENST00000562331		TCGA	LD	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90086176	+	WDR59	chr16	74976724	-
intron-3CDS	ENST00000268699	ENST00000262144		TCGA	LD	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90086176	+	WDR59	chr16	74976724	-
intron-intron	ENST00000268699	ENST00000562331		TCGA	LD	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90086176	+	WDR59	chr16	74976724	-
intron-3CDS	ENST00000540721	ENST00000262144		TCGA	LD	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90086176	+	WDR59	chr16	74976724	-
intron-intron	ENST00000540721	ENST00000562331		TCGA	LD	THCA	TCGA-BJ-A0ZB-01A	GAS8	chr16	90086176	+	WDR59	chr16	74976724	-
intron-3UTR	ENST00000371953	ENST00000388768		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000371953	ENST00000602465		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000371953	ENST00000265865		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000371953	ENST00000399200		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000371953	ENST00000454950		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000371953	ENST00000472394		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000371953	ENST00000342616		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-3UTR	ENST00000472832	ENST00000388768		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000472832	ENST00000602465		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000472832	ENST00000265865		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000472832	ENST00000399200		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000472832	ENST00000454950		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000472832	ENST00000472394		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
intron-intron	ENST00000472832	ENST00000342616		TCGA	LD	THCA	TCGA-BJ-A0ZC-01A	PTEN	chr10	89625074	+	RUFY2	chr10	70103458	-
In-frame	ENST00000374464	ENST00000395347		TCGA	LD	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61412708	-
In-frame	ENST00000374464	ENST00000395348		TCGA	LD	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61412708	-
5CDS-intron	ENST00000374464	ENST00000490066		TCGA	LD	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61412708	-
In-frame	ENST00000374466	ENST00000395347		TCGA	LD	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61412708	-
In-frame	ENST00000374466	ENST00000395348		TCGA	LD	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61412708	-
5CDS-intron	ENST00000374466	ENST00000490066		TCGA	LD	THCA	TCGA-BJ-A28Z-01A	CSGALNACT2	chr10	43651258	+	SLC16A9	chr10	61412708	-
5UTR-3CDS	ENST00000342505	ENST00000540432		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
5UTR-3CDS	ENST00000342505	ENST00000354777		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
5UTR-3CDS	ENST00000342505	ENST00000262348		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
5UTR-intron	ENST00000342505	ENST00000370976		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
5UTR-intron	ENST00000342505	ENST00000370971		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
5UTR-intron	ENST00000342505	ENST00000491811		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000465376	ENST00000540432		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000465376	ENST00000354777		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000465376	ENST00000262348		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-intron	ENST00000465376	ENST00000370976		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-intron	ENST00000465376	ENST00000370971		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-intron	ENST00000465376	ENST00000491811		TCGA	LD	THCA	TCGA-BJ-A291-01A	JAK1	chr1	65432016	-	WLS	chr1	68659910	-
intron-3CDS	ENST00000503538	ENST00000251849		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000442415		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000534997		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000542177		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000251849		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000442415		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000534997		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000542177		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000251849		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000442415		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000534997		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000542177		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N7-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-BJ-A2N8-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
Frame-shit	ENST00000280285	ENST00000310581		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000280285	ENST00000296820		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000280285	ENST00000334602		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000280285	ENST00000508104		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000280285	ENST00000522877		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382142	ENST00000310581		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382142	ENST00000296820		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382142	ENST00000334602		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000382142	ENST00000508104		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000382142	ENST00000522877		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264934	ENST00000310581		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264934	ENST00000296820		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264934	ENST00000334602		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264934	ENST00000508104		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000264934	ENST00000522877		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510216	ENST00000310581		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510216	ENST00000296820		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510216	ENST00000334602		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
intron-3CDS	ENST00000510216	ENST00000508104		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
intron-intron	ENST00000510216	ENST00000522877		TCGA	LD	THCA	TCGA-BJ-A4O9-01A	MTMR12	chr5	32263219	-	TERT	chr5	1282739	-
Frame-shit	ENST00000367178	ENST00000379310		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
Frame-shit	ENST00000367178	ENST00000281496		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
5CDS-intron	ENST00000367178	ENST00000478987		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
3UTR-3CDS	ENST00000461219	ENST00000379310		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
3UTR-3CDS	ENST00000461219	ENST00000281496		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
3UTR-intron	ENST00000461219	ENST00000478987		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
Frame-shit	ENST00000417268	ENST00000379310		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
Frame-shit	ENST00000417268	ENST00000281496		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
5CDS-intron	ENST00000417268	ENST00000478987		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
Frame-shit	ENST00000367186	ENST00000379310		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
Frame-shit	ENST00000367186	ENST00000281496		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
5CDS-intron	ENST00000367186	ENST00000478987		TCGA	LD	THCA	TCGA-CE-A13K-01A	SCAF8	chr6	155095206	+	VWA8	chr13	42361679	-
In-frame	ENST00000400788	ENST00000369110		TCGA	LD	THCA	TCGA-CE-A13K-01A	TMEM242	chr6	157739814	-	PREP	chr6	105845802	-
intron-3CDS	ENST00000367144	ENST00000369110		TCGA	LD	THCA	TCGA-CE-A13K-01A	TMEM242	chr6	157739814	-	PREP	chr6	105845802	-
Frame-shit	ENST00000367463	ENST00000263102		TCGA	LD	THCA	TCGA-CE-A13K-01A	UST	chr6	149342617	+	CCDC6	chr10	61552867	-
intron-3CDS	ENST00000466695	ENST00000263102		TCGA	LD	THCA	TCGA-CE-A13K-01A	UST	chr6	149342617	+	CCDC6	chr10	61552867	-
3UTR-5UTR	ENST00000505350	ENST00000368195		TCGA	LD	THCA	TCGA-CE-A3MD-01A	APC	chr5	112043579	+	INSRR	chr1	156828485	-
5UTR-5UTR	ENST00000457016	ENST00000368195		TCGA	LD	THCA	TCGA-CE-A3MD-01A	APC	chr5	112043579	+	INSRR	chr1	156828485	-
intron-5UTR	ENST00000257430	ENST00000368195		TCGA	LD	THCA	TCGA-CE-A3MD-01A	APC	chr5	112043579	+	INSRR	chr1	156828485	-
intron-5UTR	ENST00000508376	ENST00000368195		TCGA	LD	THCA	TCGA-CE-A3MD-01A	APC	chr5	112043579	+	INSRR	chr1	156828485	-
Frame-shit	ENST00000366919	ENST00000339697		TCGA	LD	THCA	TCGA-CE-A482-01A	MAP3K4	chr6	161413115	+	SERINC1	chr6	122779826	-
Frame-shit	ENST00000392142	ENST00000339697		TCGA	LD	THCA	TCGA-CE-A482-01A	MAP3K4	chr6	161413115	+	SERINC1	chr6	122779826	-
Frame-shit	ENST00000348824	ENST00000339697		TCGA	LD	THCA	TCGA-CE-A482-01A	MAP3K4	chr6	161413115	+	SERINC1	chr6	122779826	-
Frame-shit	ENST00000366920	ENST00000339697		TCGA	LD	THCA	TCGA-CE-A482-01A	MAP3K4	chr6	161413115	+	SERINC1	chr6	122779826	-
intron-3CDS	ENST00000446500	ENST00000339697		TCGA	LD	THCA	TCGA-CE-A482-01A	MAP3K4	chr6	161413115	+	SERINC1	chr6	122779826	-
Frame-shit	ENST00000565468	ENST00000223073		TCGA	LD	THCA	TCGA-CE-A484-01A	TMEM178B	chr7	140912504	+	RBM28	chr7	127955073	-
5CDS-5UTR	ENST00000565468	ENST00000481788		TCGA	LD	THCA	TCGA-CE-A484-01A	TMEM178B	chr7	140912504	+	RBM28	chr7	127955073	-
5CDS-5UTR	ENST00000565468	ENST00000415472		TCGA	LD	THCA	TCGA-CE-A484-01A	TMEM178B	chr7	140912504	+	RBM28	chr7	127955073	-
In-frame	ENST00000437398	ENST00000355710		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
In-frame	ENST00000437398	ENST00000340058		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
In-frame	ENST00000314328	ENST00000355710		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
In-frame	ENST00000314328	ENST00000340058		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
In-frame	ENST00000541492	ENST00000355710		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
In-frame	ENST00000541492	ENST00000340058		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
intron-3CDS	ENST00000416735	ENST00000355710		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
intron-3CDS	ENST00000416735	ENST00000340058		TCGA	LD	THCA	TCGA-CE-A485-01A	SPECC1L	chr22	24734445	+	RET	chr10	43612032	+
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-DE-A2OL-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000297071	ENST00000330266		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000405975		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000415080		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000405006		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000485353		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000402360		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000404790		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000297071	ENST00000403856		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000330266		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000405975		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000415080		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000405006		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000485353		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000402360		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000404790		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000392502	ENST00000403856		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000330266		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000405975		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000415080		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000405006		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000485353		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000402360		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000404790		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
5CDS-intron	ENST00000538367	ENST00000403856		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000330266		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000405975		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000415080		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000405006		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000485353		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000402360		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000404790		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
intron-intron	ENST00000474586	ENST00000403856		TCGA	LD	THCA	TCGA-DE-A2OL-01A	TRA2A	chr7	23545365	-	THADA	chr2	43560402	-
Frame-shit	ENST00000373451	ENST00000287218		TCGA	LD	THCA	TCGA-DE-A4MA-01A	CMTR1	chr6	37445415	+	ZFAND3	chr6	38120011	+
Frame-shit	ENST00000373451	ENST00000373391		TCGA	LD	THCA	TCGA-DE-A4MA-01A	CMTR1	chr6	37445415	+	ZFAND3	chr6	38120011	+
5CDS-3UTR	ENST00000373451	ENST00000463847		TCGA	LD	THCA	TCGA-DE-A4MA-01A	CMTR1	chr6	37445415	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000493656	ENST00000287218		TCGA	LD	THCA	TCGA-DE-A4MA-01A	CMTR1	chr6	37445415	+	ZFAND3	chr6	38120011	+
intron-3CDS	ENST00000493656	ENST00000373391		TCGA	LD	THCA	TCGA-DE-A4MA-01A	CMTR1	chr6	37445415	+	ZFAND3	chr6	38120011	+
intron-3UTR	ENST00000493656	ENST00000463847		TCGA	LD	THCA	TCGA-DE-A4MA-01A	CMTR1	chr6	37445415	+	ZFAND3	chr6	38120011	+
5CDS-3UTR	ENST00000263354	ENST00000434271		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-3UTR	ENST00000263354	ENST00000353047		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-intron	ENST00000263354	ENST00000530640		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-intron	ENST00000263354	ENST00000531089		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-3UTR	ENST00000263354	ENST00000453527		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-3UTR	ENST00000263354	ENST00000415599		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-3UTR	ENST00000263354	ENST00000345125		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-3UTR	ENST00000263354	ENST00000533455		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-3UTR	ENST00000263354	ENST00000534510		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
5CDS-intron	ENST00000263354	ENST00000525076		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000434271		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000353047		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-intron	ENST00000595227	ENST00000530640		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-intron	ENST00000595227	ENST00000531089		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000453527		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000415599		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000345125		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000533455		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000595227	ENST00000534510		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-intron	ENST00000595227	ENST00000525076		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000434271		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000353047		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-intron	ENST00000593785	ENST00000530640		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-intron	ENST00000593785	ENST00000531089		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000453527		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000415599		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000345125		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000533455		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-3UTR	ENST00000593785	ENST00000534510		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
intron-intron	ENST00000593785	ENST00000525076		TCGA	LD	THCA	TCGA-DJ-A13S-01A	NAPA	chr19	47990894	-	CTSB	chr8	11702567	-
Frame-shit	ENST00000289371	ENST00000264968		TCGA	LD	THCA	TCGA-DJ-A13T-01A	EIF5B	chr2	99954052	+	MGAT4A	chr2	99294934	-
Frame-shit	ENST00000289371	ENST00000393487		TCGA	LD	THCA	TCGA-DJ-A13T-01A	EIF5B	chr2	99954052	+	MGAT4A	chr2	99294934	-
5CDS-intron	ENST00000289371	ENST00000414521		TCGA	LD	THCA	TCGA-DJ-A13T-01A	EIF5B	chr2	99954052	+	MGAT4A	chr2	99294934	-
5CDS-intron	ENST00000289371	ENST00000409391		TCGA	LD	THCA	TCGA-DJ-A13T-01A	EIF5B	chr2	99954052	+	MGAT4A	chr2	99294934	-
5CDS-intron	ENST00000289371	ENST00000461884		TCGA	LD	THCA	TCGA-DJ-A13T-01A	EIF5B	chr2	99954052	+	MGAT4A	chr2	99294934	-
5CDS-intron	ENST00000289371	ENST00000495056		TCGA	LD	THCA	TCGA-DJ-A13T-01A	EIF5B	chr2	99954052	+	MGAT4A	chr2	99294934	-
Frame-shit	ENST00000316403	ENST00000316084		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-5UTR	ENST00000316403	ENST00000486733		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-intron	ENST00000316403	ENST00000373626		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
In-frame	ENST00000546343	ENST00000316084		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-5UTR	ENST00000546343	ENST00000486733		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-intron	ENST00000546343	ENST00000373626		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
In-frame	ENST00000560366	ENST00000316084		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-5UTR	ENST00000560366	ENST00000486733		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-intron	ENST00000560366	ENST00000373626		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
Frame-shit	ENST00000405140	ENST00000316084		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-5UTR	ENST00000405140	ENST00000486733		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-intron	ENST00000405140	ENST00000373626		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
In-frame	ENST00000523500	ENST00000316084		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-5UTR	ENST00000523500	ENST00000486733		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
5CDS-intron	ENST00000523500	ENST00000373626		TCGA	LD	THCA	TCGA-DJ-A13V-01A	CLU	chr8	27461808	-	RPS4X	chrX	71493239	-
Frame-shit	ENST00000262077	ENST00000278826		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5CDS-intron	ENST00000262077	ENST00000542946		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5CDS-intron	ENST00000262077	ENST00000540194		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5CDS-intron	ENST00000262077	ENST00000381787		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
Frame-shit	ENST00000537253	ENST00000278826		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5CDS-intron	ENST00000537253	ENST00000542946		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5CDS-intron	ENST00000537253	ENST00000540194		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5CDS-intron	ENST00000537253	ENST00000381787		TCGA	LD	THCA	TCGA-DJ-A13W-01A	NUP153	chr6	17669524	-	TMEM138	chr11	61136069	+
5UTR-3CDS	ENST00000490506	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5UTR-intron	ENST00000490506	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
Frame-shit	ENST00000206474	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000206474	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5UTR-3CDS	ENST00000554446	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5UTR-intron	ENST00000554446	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
Frame-shit	ENST00000541587	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000541587	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
Frame-shit	ENST00000397409	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000397409	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
Frame-shit	ENST00000342454	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000342454	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
In-frame	ENST00000347758	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000347758	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
Frame-shit	ENST00000555367	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000555367	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
In-frame	ENST00000555986	ENST00000241052		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000555986	ENST00000534710		TCGA	LD	THCA	TCGA-DJ-A1QH-01A	HAUS4	chr14	23421537	-	CAT	chr11	34482798	+
5CDS-intron	ENST00000377869	ENST00000330266		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000405975		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000415080		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000405006		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000485353		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000402360		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000404790		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000377869	ENST00000403856		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000330266		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000405975		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000415080		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000405006		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000485353		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000402360		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000404790		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000220616	ENST00000403856		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000330266		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000405975		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000415080		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000405006		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000485353		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000402360		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000404790		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000542445	ENST00000403856		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000330266		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000405975		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000415080		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000405006		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000485353		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000402360		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000404790		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
5CDS-intron	ENST00000519543	ENST00000403856		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000330266		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000405975		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000415080		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000405006		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000485353		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000402360		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000404790		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
3UTR-intron	ENST00000522523	ENST00000403856		TCGA	LD	THCA	TCGA-DJ-A1QL-01A	TG	chr8	133984986	+	THADA	chr2	43520352	-
Frame-shit	ENST00000301587	ENST00000261866		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000301587	ENST00000535302		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000301587	ENST00000427534		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000301587	ENST00000558319		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000301587	ENST00000558253		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000301587	ENST00000559193		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
Frame-shit	ENST00000344546	ENST00000261866		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000344546	ENST00000535302		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000344546	ENST00000427534		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000344546	ENST00000558319		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000344546	ENST00000558253		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000344546	ENST00000559193		TCGA	LD	THCA	TCGA-DJ-A2PN-01A	ATP5H	chr17	73038276	-	SPG11	chr15	44865943	-
5CDS-intron	ENST00000453258	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000453258	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000453258	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A2PX-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-3CDS	ENST00000487096	ENST00000434513		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-3CDS	ENST00000487096	ENST00000361221		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-3CDS	ENST00000487096	ENST00000452522		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-3CDS	ENST00000487096	ENST00000375415		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-intron	ENST00000487096	ENST00000375420		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-intron	ENST00000487096	ENST00000469726		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-intron	ENST00000487096	ENST00000375408		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
intron-intron	ENST00000487096	ENST00000167825		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000360840	ENST00000434513		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000360840	ENST00000361221		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000360840	ENST00000452522		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000360840	ENST00000375415		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000360840	ENST00000375420		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000360840	ENST00000469726		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000360840	ENST00000375408		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000360840	ENST00000167825		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000605337	ENST00000434513		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000605337	ENST00000361221		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000605337	ENST00000452522		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000605337	ENST00000375415		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000605337	ENST00000375420		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000605337	ENST00000469726		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000605337	ENST00000375408		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000605337	ENST00000167825		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
Frame-shit	ENST00000336230	ENST00000434513		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
Frame-shit	ENST00000336230	ENST00000361221		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
Frame-shit	ENST00000336230	ENST00000452522		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
Frame-shit	ENST00000336230	ENST00000375415		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000336230	ENST00000375420		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000336230	ENST00000469726		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000336230	ENST00000375408		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
5CDS-intron	ENST00000336230	ENST00000167825		TCGA	LD	THCA	TCGA-DJ-A2PY-01A	MRPL37	chr1	54666262	+	ARHGEF10L	chr1	17913955	+
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-DJ-A2Q1-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-DJ-A2Q1-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q3-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
intron-3CDS	ENST00000503538	ENST00000251849		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000442415		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000534997		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000542177		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000251849		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000442415		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000534997		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000542177		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000251849		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000442415		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000534997		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000542177		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q4-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q5-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-DJ-A2Q6-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000453258	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000453258	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000453258	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000371198		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000410012		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000344386		TCGA	LD	THCA	TCGA-DJ-A3UK-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
Frame-shit	ENST00000394480	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000394480	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
In-frame	ENST00000557856	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000557856	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000357724	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000357724	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000355254	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000355254	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000360948	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000360948	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000542733	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000542733	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
In-frame	ENST00000558676	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000558676	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000317501	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000317501	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
intron-3CDS	ENST00000558306	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
intron-intron	ENST00000558306	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
In-frame	ENST00000540489	ENST00000396373		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000540489	ENST00000544715		TCGA	LD	THCA	TCGA-DJ-A3UV-01A	NTRK3	chr15	88669502	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000366610	ENST00000392302		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000366610	ENST00000368196		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000366610	ENST00000524377		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
Frame-shit	ENST00000366610	ENST00000358660		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
5CDS-intron	ENST00000366610	ENST00000531606		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000392302		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000368196		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000524377		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000366609	ENST00000358660		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-intron	ENST00000366609	ENST00000531606		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000392302		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000368196		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000524377		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3CDS	ENST00000491430	ENST00000358660		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-intron	ENST00000491430	ENST00000531606		TCGA	LD	THCA	TCGA-DJ-A4UQ-01A	IRF2BP2	chr1	234744241	-	NTRK1	chr1	156844363	+
intron-3UTR	ENST00000398540	ENST00000487159		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000398540	ENST00000327628		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000398540	ENST00000449246		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000398540	ENST00000341421		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000398540	ENST00000396175		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-3UTR	ENST00000542259	ENST00000487159		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000542259	ENST00000327628		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000542259	ENST00000449246		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000542259	ENST00000341421		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000542259	ENST00000396175		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-3UTR	ENST00000497757	ENST00000487159		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000497757	ENST00000327628		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000497757	ENST00000449246		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000497757	ENST00000341421		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000497757	ENST00000396175		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-3UTR	ENST00000478263	ENST00000487159		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000478263	ENST00000327628		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000478263	ENST00000449246		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000478263	ENST00000341421		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
intron-intron	ENST00000478263	ENST00000396175		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	FRMD4B	chr3	69591357	-	TRAK1	chr3	42128596	+
3UTR-intron	ENST00000487159	ENST00000398540		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
3UTR-intron	ENST00000487159	ENST00000542259		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
3UTR-5UTR	ENST00000487159	ENST00000497757		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
3UTR-intron	ENST00000487159	ENST00000478263		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000327628	ENST00000398540		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000327628	ENST00000542259		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000327628	ENST00000497757		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000327628	ENST00000478263		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000449246	ENST00000398540		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000449246	ENST00000542259		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000449246	ENST00000497757		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000449246	ENST00000478263		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000341421	ENST00000398540		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000341421	ENST00000542259		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000341421	ENST00000497757		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000341421	ENST00000478263		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000396175	ENST00000398540		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000396175	ENST00000542259		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-5UTR	ENST00000396175	ENST00000497757		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
intron-intron	ENST00000396175	ENST00000478263		TCGA	LD	THCA	TCGA-DJ-A4UR-01A	TRAK1	chr3	42055609	+	FRMD4B	chr3	69481912	-
3UTR-3CDS	ENST00000534336	ENST00000389048		TCGA	LD	THCA	TCGA-DJ-A4UT-01A	MALAT1	chr11	65269267	+	ALK	chr2	29451934	-
3UTR-intron	ENST00000534336	ENST00000431873		TCGA	LD	THCA	TCGA-DJ-A4UT-01A	MALAT1	chr11	65269267	+	ALK	chr2	29451934	-
3UTR-intron	ENST00000534336	ENST00000498037		TCGA	LD	THCA	TCGA-DJ-A4UT-01A	MALAT1	chr11	65269267	+	ALK	chr2	29451934	-
5CDS-5UTR	ENST00000358026	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000358026	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000358026	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000358026	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000358026	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000358026	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000358026	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000358026	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000358026	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000358026	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000344626	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000344626	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000344626	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000344626	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000429416	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000429416	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000429416	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000429416	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000541122	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000541122	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000541122	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000541122	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000589677	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000589677	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000589677	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000589677	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000444061	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000444061	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000444061	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000444061	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000590574	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000590574	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000590574	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000590574	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000413806	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000413806	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000413806	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000413806	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000450717	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000450717	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-5UTR	ENST00000450717	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
5CDS-intron	ENST00000450717	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000434271		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000353047		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000530640		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000531089		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000453527		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-intron	ENST00000538456	ENST00000415599		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-intron	ENST00000538456	ENST00000345125		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000533455		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-5UTR	ENST00000538456	ENST00000534510		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-intron	ENST00000538456	ENST00000525076		TCGA	LD	THCA	TCGA-E3-A3E5-01A	SMARCA4	chr19	11135114	+	CTSB	chr8	11725596	-
intron-3CDS	ENST00000413430	ENST00000390239		TCGA	LD	THCA	TCGA-E8-A242-01A	RBMS3-AS3	chr3	29322382	-	IGKJ4	chr2	89160434	-
Frame-shit	ENST00000280772	ENST00000263102		TCGA	LD	THCA	TCGA-E8-A44M-01A	ANK3	chr10	61815416	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000373827	ENST00000263102		TCGA	LD	THCA	TCGA-E8-A44M-01A	ANK3	chr10	61815416	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000355288	ENST00000263102		TCGA	LD	THCA	TCGA-E8-A44M-01A	ANK3	chr10	61815416	-	CCDC6	chr10	61612460	-
Frame-shit	ENST00000503366	ENST00000263102		TCGA	LD	THCA	TCGA-E8-A44M-01A	ANK3	chr10	61815416	-	CCDC6	chr10	61612460	-
intron-3CDS	ENST00000510382	ENST00000263102		TCGA	LD	THCA	TCGA-E8-A44M-01A	ANK3	chr10	61815416	-	CCDC6	chr10	61612460	-
intron-3CDS	ENST00000460468	ENST00000263102		TCGA	LD	THCA	TCGA-E8-A44M-01A	ANK3	chr10	61815416	-	CCDC6	chr10	61612460	-
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-E8-A44M-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-E8-A44M-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-intron	ENST00000437048	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000437048	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000437048	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-3UTR	ENST00000437048	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-intron	ENST00000574029	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-intron	ENST00000574029	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-intron	ENST00000574029	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-3UTR	ENST00000574029	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-intron	ENST00000576149	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-intron	ENST00000576149	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-intron	ENST00000576149	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
intron-3UTR	ENST00000576149	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5UTR-intron	ENST00000446250	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5UTR-intron	ENST00000446250	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5UTR-intron	ENST00000446250	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5UTR-3UTR	ENST00000446250	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000291074	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000291074	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000291074	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-3UTR	ENST00000291074	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000571805	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000571805	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000571805	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-3UTR	ENST00000571805	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000401468	ENST00000541084		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000401468	ENST00000346342		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-intron	ENST00000401468	ENST00000375581		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
5CDS-3UTR	ENST00000401468	ENST00000473085		TCGA	LD	THCA	TCGA-EL-A3CR-01A	VPS53	chr17	600658	-	F7	chr13	113768066	+
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-EL-A3CY-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-EL-A3CY-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
Frame-shit	ENST00000541158	ENST00000553612		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000541158	ENST00000434192		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000342443	ENST00000553612		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000342443	ENST00000434192		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000298171	ENST00000553612		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000298171	ENST00000434192		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000554263	ENST00000553612		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000554263	ENST00000434192		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000554435	ENST00000553612		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
Frame-shit	ENST00000554435	ENST00000434192		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
3UTR-3CDS	ENST00000557096	ENST00000553612		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
3UTR-3CDS	ENST00000557096	ENST00000434192		TCGA	LD	THCA	TCGA-EL-A3GR-01A	TSHR	chr14	81422194	+	GTF2A1	chr14	81670448	-
In-frame	ENST00000437809	ENST00000368467		TCGA	LD	THCA	TCGA-EL-A3H2-01A	GON4L	chr1	155727682	-	PMVK	chr1	154904891	-
In-frame	ENST00000368331	ENST00000368467		TCGA	LD	THCA	TCGA-EL-A3H2-01A	GON4L	chr1	155727682	-	PMVK	chr1	154904891	-
In-frame	ENST00000271883	ENST00000368467		TCGA	LD	THCA	TCGA-EL-A3H2-01A	GON4L	chr1	155727682	-	PMVK	chr1	154904891	-
intron-3CDS	ENST00000361040	ENST00000368467		TCGA	LD	THCA	TCGA-EL-A3H2-01A	GON4L	chr1	155727682	-	PMVK	chr1	154904891	-
intron-3CDS	ENST00000471341	ENST00000368467		TCGA	LD	THCA	TCGA-EL-A3H2-01A	GON4L	chr1	155727682	-	PMVK	chr1	154904891	-
5UTR-3CDS	ENST00000437079	ENST00000346169		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000414031		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000392537		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000382330		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000350481		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000352767		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000427845		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000342981		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000319274		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000424196		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000411531		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000441154		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000434061		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000437079	ENST00000435046		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000346169		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000414031		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000392537		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000382330		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000350481		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000352767		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000427845		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000342981		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000319274		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000424196		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000411531		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000441154		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000434061		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000287546	ENST00000435046		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000346169		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000414031		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000392537		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000382330		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000350481		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000352767		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000427845		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000342981		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000319274		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000424196		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000411531		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000441154		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000434061		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000436792	ENST00000435046		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000346169		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000414031		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000392537		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000382330		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000350481		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000352767		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000427845		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000342981		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000319274		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000424196		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000411531		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000441154		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000434061		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
5UTR-3CDS	ENST00000446204	ENST00000435046		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000346169		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000414031		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000392537		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000382330		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000350481		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000352767		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000427845		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000342981		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000319274		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000424196		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000411531		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000441154		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000434061		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000424463	ENST00000435046		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000346169		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000414031		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000392537		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000382330		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000350481		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000352767		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000427845		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000342981		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000319274		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000424196		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000411531		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000441154		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000434061		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
intron-3CDS	ENST00000463687	ENST00000435046		TCGA	LD	THCA	TCGA-EL-A3H3-01A	VPS8	chr3	184530013	+	EIF4G1	chr3	184049054	+
In-frame	ENST00000255194	ENST00000288602		TCGA	LD	THCA	TCGA-EL-A3T0-01A	AP3B1	chr5	77385217	-	BRAF	chr7	140487384	-
In-frame	ENST00000519295	ENST00000288602		TCGA	LD	THCA	TCGA-EL-A3T0-01A	AP3B1	chr5	77385217	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000523204	ENST00000288602		TCGA	LD	THCA	TCGA-EL-A3T0-01A	AP3B1	chr5	77385217	-	BRAF	chr7	140487384	-
intron-3CDS	ENST00000405805	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000405805	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000405805	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-3CDS	ENST00000339872	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000339872	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000339872	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-3CDS	ENST00000341423	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000341423	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000341423	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-3CDS	ENST00000399489	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000399489	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000399489	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-3CDS	ENST00000399494	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000399494	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000399494	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-3CDS	ENST00000326004	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000326004	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000326004	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-3CDS	ENST00000468384	ENST00000298248		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-5UTR	ENST00000468384	ENST00000382812		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
intron-intron	ENST00000468384	ENST00000480748		TCGA	LD	THCA	TCGA-EL-A3T0-01A	HMGB1	chr13	31191353	-	CRYL1	chr13	21086689	-
Frame-shit	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-EL-A3ZP-01A	CCDC6	chr10	61665880	-	RET	chr10	43610035	+
Frame-shit	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-EL-A3ZP-01A	CCDC6	chr10	61665880	-	RET	chr10	43610035	+
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-EL-A3ZS-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-EL-A3ZS-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
intron-3UTR	ENST00000309366	ENST00000463837		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-3UTR	ENST00000309366	ENST00000356786		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-5UTR	ENST00000309366	ENST00000301897		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-5UTR	ENST00000309366	ENST00000359902		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-3UTR	ENST00000449942	ENST00000463837		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-3UTR	ENST00000449942	ENST00000356786		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-5UTR	ENST00000449942	ENST00000301897		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-5UTR	ENST00000449942	ENST00000359902		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-3UTR	ENST00000394540	ENST00000463837		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-3UTR	ENST00000394540	ENST00000356786		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-5UTR	ENST00000394540	ENST00000301897		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-5UTR	ENST00000394540	ENST00000359902		TCGA	LD	THCA	TCGA-EL-A4KG-01A	FKBP2	chr11	64010873	+	CCDC88B	chr11	64120526	+
intron-3CDS	ENST00000503538	ENST00000251849		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000442415		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000534997		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000503538	ENST00000542177		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000251849		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000442415		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000534997		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
In-frame	ENST00000312916	ENST00000542177		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000251849		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000442415		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000534997		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
intron-3CDS	ENST00000506806	ENST00000542177		TCGA	LD	THCA	TCGA-EM-A1CS-01A	AGGF1	chr5	76335544	+	RAF1	chr3	12641914	-
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-EM-A1CS-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
intron-3CDS	ENST00000497517	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-intron	ENST00000497517	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-3CDS	ENST00000539820	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-intron	ENST00000539820	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-3CDS	ENST00000382269	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-intron	ENST00000382269	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-3CDS	ENST00000349624	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-intron	ENST00000349624	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
In-frame	ENST00000345913	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
5CDS-intron	ENST00000345913	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
In-frame	ENST00000346956	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
5CDS-intron	ENST00000346956	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
In-frame	ENST00000337415	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
5CDS-intron	ENST00000337415	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
In-frame	ENST00000329066	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
5CDS-intron	ENST00000329066	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
In-frame	ENST00000382201	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
5CDS-intron	ENST00000382201	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-3CDS	ENST00000382198	ENST00000343916		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-intron	ENST00000382198	ENST00000462700		TCGA	LD	THCA	TCGA-EM-A1YD-01A	TPO	chr2	1481376	+	COL9A3	chr20	61459275	+
intron-3CDS	ENST00000308664	ENST00000314797		TCGA	LD	THCA	TCGA-EM-A22L-01A	ATP2A2	chr12	110784681	+	COPG1	chr3	128976421	+
3UTR-3CDS	ENST00000395494	ENST00000314797		TCGA	LD	THCA	TCGA-EM-A22L-01A	ATP2A2	chr12	110784681	+	COPG1	chr3	128976421	+
3UTR-3CDS	ENST00000539276	ENST00000314797		TCGA	LD	THCA	TCGA-EM-A22L-01A	ATP2A2	chr12	110784681	+	COPG1	chr3	128976421	+
intron-3CDS	ENST00000550248	ENST00000314797		TCGA	LD	THCA	TCGA-EM-A22L-01A	ATP2A2	chr12	110784681	+	COPG1	chr3	128976421	+
intron-3CDS	ENST00000552636	ENST00000314797		TCGA	LD	THCA	TCGA-EM-A22L-01A	ATP2A2	chr12	110784681	+	COPG1	chr3	128976421	+
In-frame	ENST00000361822	ENST00000304877		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000361822	ENST00000534000		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000361822	ENST00000368402		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000361822	ENST00000368388		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000361822	ENST00000527711		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000361822	ENST00000528193		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000361822	ENST00000532429		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000361822	ENST00000534199		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000361822	ENST00000392482		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000361822	ENST00000524679		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000361822	ENST00000530868		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000450657	ENST00000304877		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000450657	ENST00000534000		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000450657	ENST00000368402		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000450657	ENST00000368388		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000450657	ENST00000527711		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000450657	ENST00000528193		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450657	ENST00000532429		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450657	ENST00000534199		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450657	ENST00000392482		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000450657	ENST00000524679		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000450657	ENST00000530868		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000421043	ENST00000304877		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000421043	ENST00000534000		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000421043	ENST00000368402		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000421043	ENST00000368388		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000421043	ENST00000527711		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
In-frame	ENST00000421043	ENST00000528193		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000421043	ENST00000532429		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000421043	ENST00000534199		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000421043	ENST00000392482		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-5UTR	ENST00000421043	ENST00000524679		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
5CDS-intron	ENST00000421043	ENST00000530868		TCGA	LD	THCA	TCGA-EM-A22Q-01A	ZNF277	chr7	111846862	+	TPD52L1	chr6	125541224	+
Frame-shit	ENST00000259021	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
Frame-shit	ENST00000259021	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
5CDS-3UTR	ENST00000259021	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
Frame-shit	ENST00000454930	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
Frame-shit	ENST00000454930	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
5CDS-3UTR	ENST00000454930	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000509773	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000509773	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000509773	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000510819	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000510819	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000510819	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000424009	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000424009	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000424009	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
Frame-shit	ENST00000503935	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
Frame-shit	ENST00000503935	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
5CDS-3UTR	ENST00000503935	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000435742	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000435742	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000435742	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000513980	ENST00000290341		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3CDS	ENST00000513980	ENST00000431824		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
intron-3UTR	ENST00000513980	ENST00000515586		TCGA	LD	THCA	TCGA-EM-A2CM-01A	KAT7	chr17	47886570	+	IGF2BP1	chr17	47076471	+
Frame-shit	ENST00000216254	ENST00000355528		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
Frame-shit	ENST00000216254	ENST00000397466		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
Frame-shit	ENST00000216254	ENST00000539345		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
5CDS-intron	ENST00000216254	ENST00000576691		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
Frame-shit	ENST00000396512	ENST00000355528		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
Frame-shit	ENST00000396512	ENST00000397466		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
Frame-shit	ENST00000396512	ENST00000539345		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
5CDS-intron	ENST00000396512	ENST00000576691		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
3UTR-3CDS	ENST00000466237	ENST00000355528		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
3UTR-3CDS	ENST00000466237	ENST00000397466		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
3UTR-3CDS	ENST00000466237	ENST00000539345		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
3UTR-intron	ENST00000466237	ENST00000576691		TCGA	LD	THCA	TCGA-EM-A2CN-01A	ACO2	chr22	41916280	+	TBCD	chr17	80772716	+
5UTR-3CDS	ENST00000393500	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
5UTR-5UTR	ENST00000393500	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
5UTR-intron	ENST00000393500	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000393494	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000393494	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000393494	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000403559	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000403559	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000403559	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000408937	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000408937	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000408937	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000350908	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000350908	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000350908	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000393498	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000393498	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000393498	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000393489	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000393489	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000393489	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000393491	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000393491	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000393491	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000459666	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000459666	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000459666	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000378237	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000378237	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000378237	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000360232	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000360232	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000360232	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000390668	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000390668	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000390668	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000462331	ENST00000309683		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-5UTR	ENST00000462331	ENST00000476563		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-intron	ENST00000462331	ENST00000447137		TCGA	LD	THCA	TCGA-EM-A2CN-01A	FOXP2	chr7	113726666	+	ZNF680	chr7	63982878	-
intron-3CDS	ENST00000312239	ENST00000402136		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000312239	ENST00000407315		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000312239	ENST00000402545		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-intron	ENST00000312239	ENST00000497486		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000487117	ENST00000402136		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000487117	ENST00000407315		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000487117	ENST00000402545		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-intron	ENST00000487117	ENST00000497486		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000375000	ENST00000402136		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000375000	ENST00000407315		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000375000	ENST00000402545		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-intron	ENST00000375000	ENST00000497486		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000375003	ENST00000402136		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000375003	ENST00000407315		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-3CDS	ENST00000375003	ENST00000402545		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
intron-intron	ENST00000375003	ENST00000497486		TCGA	LD	THCA	TCGA-EM-A2CN-01A	HP1BP3	chr1	21113688	-	THAP4	chr2	242524140	-
5CDS-3UTR	ENST00000217381	ENST00000497517		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000539820		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000382269		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000349624		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000345913		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000346956		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000337415		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000329066		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000382201		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-intron	ENST00000217381	ENST00000382198		TCGA	LD	THCA	TCGA-EM-A2CO-01A	SNTA1	chr20	32026647	-	TPO	chr2	1520655	+
5CDS-5UTR	ENST00000544604	ENST00000568047		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000544604	ENST00000320640		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
5CDS-5UTR	ENST00000544604	ENST00000544001		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
5UTR-5UTR	ENST00000332811	ENST00000568047		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
5UTR-5UTR	ENST00000332811	ENST00000320640		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
5UTR-5UTR	ENST00000332811	ENST00000544001		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000402174	ENST00000568047		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000402174	ENST00000320640		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000402174	ENST00000544001		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000406323	ENST00000568047		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000406323	ENST00000320640		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
intron-5UTR	ENST00000406323	ENST00000544001		TCGA	LD	THCA	TCGA-EM-A2CO-01A	ZNRF3	chr22	29280054	+	ITFG1	chr16	47196575	-
In-frame	ENST00000359154	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000359154	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000359154	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000359154	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000359154	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000359154	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000359154	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000359154	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000359154	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-intron	ENST00000359154	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000448661	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000448661	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000448661	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000448661	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000448661	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000448661	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000448661	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000448661	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000448661	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-intron	ENST00000448661	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3CDS	ENST00000569174	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3CDS	ENST00000569174	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3CDS	ENST00000569174	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3CDS	ENST00000569174	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3CDS	ENST00000569174	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3UTR	ENST00000569174	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3UTR	ENST00000569174	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3UTR	ENST00000569174	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-3UTR	ENST00000569174	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
intron-intron	ENST00000569174	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000356003	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000356003	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000356003	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000356003	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000356003	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000356003	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000356003	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000356003	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000356003	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-intron	ENST00000356003	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3CDS	ENST00000544162	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3CDS	ENST00000544162	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3CDS	ENST00000544162	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3CDS	ENST00000544162	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3CDS	ENST00000544162	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3UTR	ENST00000544162	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3UTR	ENST00000544162	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3UTR	ENST00000544162	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-3UTR	ENST00000544162	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
3UTR-intron	ENST00000544162	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000542271	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000542271	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000542271	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000542271	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
Frame-shit	ENST00000542271	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000542271	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000542271	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000542271	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000542271	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-intron	ENST00000542271	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000568684	ENST00000434271		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000568684	ENST00000353047		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000568684	ENST00000530640		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000568684	ENST00000531089		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000568684	ENST00000453527		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000568684	ENST00000415599		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000568684	ENST00000345125		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000568684	ENST00000533455		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-3UTR	ENST00000568684	ENST00000534510		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
5CDS-intron	ENST00000568684	ENST00000525076		TCGA	LD	THCA	TCGA-EM-A2OX-01A	WWP2	chr16	69973809	+	CTSB	chr8	11705230	-
In-frame	ENST00000309007	ENST00000506693		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
In-frame	ENST00000309007	ENST00000358149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000309007	ENST00000512315		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000309007	ENST00000503425		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000309007	ENST00000261948		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000309007	ENST00000511834		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000309007	ENST00000503039		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
In-frame	ENST00000292385	ENST00000506693		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
In-frame	ENST00000292385	ENST00000358149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000292385	ENST00000512315		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000292385	ENST00000503425		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000292385	ENST00000261948		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000292385	ENST00000511834		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000292385	ENST00000503039		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
In-frame	ENST00000393565	ENST00000506693		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
In-frame	ENST00000393565	ENST00000358149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000393565	ENST00000512315		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000393565	ENST00000503425		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000393565	ENST00000261948		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000393565	ENST00000511834		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
Frame-shit	ENST00000393565	ENST00000503039		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000506693		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000358149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000512315		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000503425		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000261948		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000511834		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000393563	ENST00000503039		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000506693		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000358149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000512315		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000503425		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000261948		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000511834		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
intron-3CDS	ENST00000512501	ENST00000503039		TCGA	LD	THCA	TCGA-EM-A2P1-01A	DBN1	chr5	176893773	-	ZNF346	chr5	176491513	+
In-frame	ENST00000535633	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000535633	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000535633	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
Frame-shit	ENST00000424319	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000424319	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000424319	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
Frame-shit	ENST00000343727	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000343727	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000343727	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000534731	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000534731	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000534731	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000525196	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000525196	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000525196	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000263317	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000263317	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000263317	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
Frame-shit	ENST00000532825	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000532825	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000532825	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000527956	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000527956	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000527956	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
Frame-shit	ENST00000542487	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000542487	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000542487	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5UTR-3CDS	ENST00000527626	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5UTR-5UTR	ENST00000527626	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5UTR-5UTR	ENST00000527626	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
intron-3CDS	ENST00000528341	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
intron-5UTR	ENST00000528341	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
intron-5UTR	ENST00000528341	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000413594	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000413594	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000413594	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000375979	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000375979	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000375979	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000531342	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000531342	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000531342	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
In-frame	ENST00000393282	ENST00000525141		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000393282	ENST00000298966		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
5CDS-5UTR	ENST00000393282	ENST00000527149		TCGA	LD	THCA	TCGA-EM-A2P1-01A	NOX4	chr11	89223626	-	SMCO4	chr11	93232514	-
intron-3UTR	ENST00000334005	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000334005	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000334005	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000334005	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000334005	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000334005	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378473	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378473	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378473	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378473	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378473	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378473	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000278655	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000278655	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000278655	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000278655	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000278655	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000278655	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000414679	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000414679	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000414679	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000414679	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000414679	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000414679	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000492632	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000492632	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000492632	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000492632	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000492632	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000492632	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378501	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378501	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378501	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378501	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378501	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378501	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378493	ENST00000313949		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378493	ENST00000371098		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378493	ENST00000371075		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378493	ENST00000371100		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000371099		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000371102		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-3UTR	ENST00000378493	ENST00000464624		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000306120		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000371095		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000371085		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000354359		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000265620		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000306090		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
intron-intron	ENST00000378493	ENST00000371081		TCGA	LD	THCA	TCGA-EM-A2P2-01A	PLCB4	chr20	9147342	+	GNAS	chr20	57470667	+
In-frame	ENST00000462484	ENST00000298585		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
5CDS-5UTR	ENST00000462484	ENST00000471957		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
5UTR-3CDS	ENST00000334856	ENST00000298585		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
5UTR-5UTR	ENST00000334856	ENST00000471957		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
In-frame	ENST00000460843	ENST00000298585		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
5CDS-5UTR	ENST00000460843	ENST00000471957		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
3UTR-3CDS	ENST00000371394	ENST00000298585		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
3UTR-5UTR	ENST00000371394	ENST00000471957		TCGA	LD	THCA	TCGA-EM-A2P3-01A	EHMT1	chr9	140513501	+	ZMYND19	chr9	140483170	-
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-EM-A3AN-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-EM-A3AN-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-3UTR	ENST00000266546	ENST00000455147		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000266546	ENST00000266563		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000266546	ENST00000545220		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000266546	ENST00000434354		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000266546	ENST00000420616		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000266546	ENST00000412720		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000266546	ENST00000266564		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-3UTR	ENST00000537408	ENST00000455147		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000537408	ENST00000266563		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000537408	ENST00000545220		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000537408	ENST00000434354		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000537408	ENST00000420616		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000537408	ENST00000412720		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
5CDS-intron	ENST00000537408	ENST00000266564		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-3UTR	ENST00000331148	ENST00000455147		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-intron	ENST00000331148	ENST00000266563		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-intron	ENST00000331148	ENST00000545220		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-intron	ENST00000331148	ENST00000434354		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-intron	ENST00000331148	ENST00000420616		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-intron	ENST00000331148	ENST00000412720		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-intron	ENST00000331148	ENST00000266564		TCGA	LD	THCA	TCGA-EM-A3AO-01A	CLSTN3	chr12	7295907	+	PEX5	chr12	7370998	+
intron-3CDS	ENST00000276692	ENST00000360317		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000276692	ENST00000394175		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000276692	ENST00000309481		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000276692	ENST00000520542		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000276692	ENST00000418519		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000276692	ENST00000394179		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000519548	ENST00000360317		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000519548	ENST00000394175		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000519548	ENST00000309481		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000519548	ENST00000520542		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000519548	ENST00000418519		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000519548	ENST00000394179		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
5UTR-3CDS	ENST00000517678	ENST00000360317		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
5UTR-3CDS	ENST00000517678	ENST00000394175		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
5UTR-3CDS	ENST00000517678	ENST00000309481		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
5UTR-3CDS	ENST00000517678	ENST00000520542		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
5UTR-3CDS	ENST00000517678	ENST00000418519		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
5UTR-3CDS	ENST00000517678	ENST00000394179		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000521546	ENST00000360317		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000521546	ENST00000394175		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000521546	ENST00000309481		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000521546	ENST00000520542		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000521546	ENST00000418519		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000521546	ENST00000394179		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000605953	ENST00000360317		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000605953	ENST00000394175		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000605953	ENST00000309481		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000605953	ENST00000520542		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000605953	ENST00000418519		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
intron-3CDS	ENST00000605953	ENST00000394179		TCGA	LD	THCA	TCGA-EM-A3FP-01A	TATDN1	chr8	125551169	-	GSDMB	chr17	38066177	-
Frame-shit	ENST00000544440	ENST00000261854		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
5CDS-intron	ENST00000544440	ENST00000559293		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
Frame-shit	ENST00000407578	ENST00000261854		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
5CDS-intron	ENST00000407578	ENST00000559293		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
In-frame	ENST00000357337	ENST00000261854		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
5CDS-intron	ENST00000357337	ENST00000559293		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
intron-3CDS	ENST00000360084	ENST00000261854		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
intron-intron	ENST00000360084	ENST00000559293		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
intron-3CDS	ENST00000482517	ENST00000261854		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
intron-intron	ENST00000482517	ENST00000559293		TCGA	LD	THCA	TCGA-EM-A3O3-01A	MYCBP2	chr13	77661619	-	SPPL2A	chr15	51028937	-
5CDS-intron	ENST00000453258	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000453258	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000453258	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000543964	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371207	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371203	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000539125	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
5CDS-intron	ENST00000371205	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000371198		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000410012		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
intron-intron	ENST00000490659	ENST00000344386		TCGA	LD	THCA	TCGA-EM-A3OB-01A	ENTPD1	chr10	97624618	+	CC2D2B	chr10	97671058	+
Frame-shit	ENST00000324306	ENST00000396197		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
Frame-shit	ENST00000324306	ENST00000543987		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000324306	ENST00000540666		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000324306	ENST00000535484		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000324306	ENST00000320750		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000324306	ENST00000379387		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000324306	ENST00000541984		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-intron	ENST00000324306	ENST00000300038		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
Frame-shit	ENST00000426572	ENST00000396197		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
Frame-shit	ENST00000426572	ENST00000543987		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000426572	ENST00000540666		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000426572	ENST00000535484		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000426572	ENST00000320750		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000426572	ENST00000379387		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-5UTR	ENST00000426572	ENST00000541984		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5CDS-intron	ENST00000426572	ENST00000300038		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-3CDS	ENST00000535170	ENST00000396197		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-3CDS	ENST00000535170	ENST00000543987		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-5UTR	ENST00000535170	ENST00000540666		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-5UTR	ENST00000535170	ENST00000535484		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-5UTR	ENST00000535170	ENST00000320750		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-5UTR	ENST00000535170	ENST00000379387		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-5UTR	ENST00000535170	ENST00000541984		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
intron-intron	ENST00000535170	ENST00000300038		TCGA	LD	THCA	TCGA-EM-A4FR-01A	ZKSCAN1	chr7	99621930	+	UEVLD	chr11	18579877	-
5UTR-3CDS	ENST00000382456	ENST00000341319		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
5UTR-intron	ENST00000382456	ENST00000487643		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
5UTR-3CDS	ENST00000411763	ENST00000341319		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
5UTR-intron	ENST00000411763	ENST00000487643		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
5UTR-3CDS	ENST00000292807	ENST00000341319		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
5UTR-intron	ENST00000292807	ENST00000487643		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
intron-3CDS	ENST00000439647	ENST00000341319		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
intron-intron	ENST00000439647	ENST00000487643		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
intron-3CDS	ENST00000461733	ENST00000341319		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
intron-intron	ENST00000461733	ENST00000487643		TCGA	LD	THCA	TCGA-ET-A25M-01A	AP2M1	chr3	183892747	+	KLHL6	chr3	183226296	-
5CDS-3UTR	ENST00000373491	ENST00000458659		TCGA	LD	THCA	TCGA-ET-A2N4-01A	TBC1D22B	chr6	37298929	+	TSC22D1	chr13	45007912	-
5CDS-3UTR	ENST00000373491	ENST00000501704		TCGA	LD	THCA	TCGA-ET-A2N4-01A	TBC1D22B	chr6	37298929	+	TSC22D1	chr13	45007912	-
5CDS-3UTR	ENST00000373491	ENST00000261489		TCGA	LD	THCA	TCGA-ET-A2N4-01A	TBC1D22B	chr6	37298929	+	TSC22D1	chr13	45007912	-
5CDS-intron	ENST00000373491	ENST00000460842		TCGA	LD	THCA	TCGA-ET-A2N4-01A	TBC1D22B	chr6	37298929	+	TSC22D1	chr13	45007912	-
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-ET-A39R-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-ET-A39R-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
intron-3UTR	ENST00000271332	ENST00000256637		TCGA	LD	THCA	TCGA-ET-A3BU-01A	CELSR2	chr1	109816548	+	SORT1	chr1	109854753	-
intron-intron	ENST00000271332	ENST00000538502		TCGA	LD	THCA	TCGA-ET-A3BU-01A	CELSR2	chr1	109816548	+	SORT1	chr1	109854753	-
intron-intron	ENST00000271332	ENST00000482236		TCGA	LD	THCA	TCGA-ET-A3BU-01A	CELSR2	chr1	109816548	+	SORT1	chr1	109854753	-
3UTR-3UTR	ENST00000498157	ENST00000256637		TCGA	LD	THCA	TCGA-ET-A3BU-01A	CELSR2	chr1	109816548	+	SORT1	chr1	109854753	-
3UTR-intron	ENST00000498157	ENST00000538502		TCGA	LD	THCA	TCGA-ET-A3BU-01A	CELSR2	chr1	109816548	+	SORT1	chr1	109854753	-
3UTR-intron	ENST00000498157	ENST00000482236		TCGA	LD	THCA	TCGA-ET-A3BU-01A	CELSR2	chr1	109816548	+	SORT1	chr1	109854753	-
5CDS-intron	ENST00000251849	ENST00000503538		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000312916		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000251849	ENST00000506806		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000503538		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000312916		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000442415	ENST00000506806		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000503538		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000312916		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000534997	ENST00000506806		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000503538		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000312916		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
5CDS-intron	ENST00000542177	ENST00000506806		TCGA	LD	THCA	TCGA-ET-A3BU-01A	RAF1	chr3	12645635	-	AGGF1	chr5	76342172	+
intron-3CDS	ENST00000344337	ENST00000488476		TCGA	LD	THCA	TCGA-ET-A3DU-01A	KPNA1	chr3	122233350	-	IGHJ5	chr14	106330069	-
intron-3CDS	ENST00000466923	ENST00000488476		TCGA	LD	THCA	TCGA-ET-A3DU-01A	KPNA1	chr3	122233350	-	IGHJ5	chr14	106330069	-
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-ET-A40T-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-ET-A40T-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
intron-3CDS	ENST00000407149	ENST00000390241		TCGA	LD	THCA	TCGA-FE-A230-01A	PRR16	chr5	119801377	+	IGKJ2	chr2	89161068	-
intron-3CDS	ENST00000379551	ENST00000390241		TCGA	LD	THCA	TCGA-FE-A230-01A	PRR16	chr5	119801377	+	IGKJ2	chr2	89161068	-
intron-3CDS	ENST00000505123	ENST00000390241		TCGA	LD	THCA	TCGA-FE-A230-01A	PRR16	chr5	119801377	+	IGKJ2	chr2	89161068	-
intron-3CDS	ENST00000446965	ENST00000390241		TCGA	LD	THCA	TCGA-FE-A230-01A	PRR16	chr5	119801377	+	IGKJ2	chr2	89161068	-
5CDS-5UTR	ENST00000335509	ENST00000378609		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
5CDS-5UTR	ENST00000335509	ENST00000472614		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
5CDS-5UTR	ENST00000550785	ENST00000378609		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
5CDS-5UTR	ENST00000550785	ENST00000472614		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
5CDS-5UTR	ENST00000541517	ENST00000378609		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
5CDS-5UTR	ENST00000541517	ENST00000472614		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
intron-5UTR	ENST00000392569	ENST00000378609		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
intron-5UTR	ENST00000392569	ENST00000472614		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
intron-5UTR	ENST00000546787	ENST00000378609		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
intron-5UTR	ENST00000546787	ENST00000472614		TCGA	LD	THCA	TCGA-FE-A233-01A	TPCN1	chr12	113664769	+	GNB1	chr1	1756938	-
In-frame	ENST00000262061	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000549043	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000552218	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000553231	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000552362	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000455864	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000416254	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000549116	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000551779	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
3UTR-3CDS	ENST00000548281	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
In-frame	ENST00000548753	ENST00000314391		TCGA	LD	THCA	TCGA-FE-A235-01A	COPZ1	chr12	54741628	+	C19orf18	chr19	58472919	-
5CDS-3UTR	ENST00000559624	ENST00000409454		TCGA	LD	THCA	TCGA-FE-A239-01A	EIF2AK4	chr15	40241469	+	HMGN2P46	chr15	45847688	+
5CDS-3UTR	ENST00000382727	ENST00000409454		TCGA	LD	THCA	TCGA-FE-A239-01A	EIF2AK4	chr15	40241469	+	HMGN2P46	chr15	45847688	+
5CDS-3UTR	ENST00000263791	ENST00000409454		TCGA	LD	THCA	TCGA-FE-A239-01A	EIF2AK4	chr15	40241469	+	HMGN2P46	chr15	45847688	+
intron-3UTR	ENST00000560648	ENST00000409454		TCGA	LD	THCA	TCGA-FE-A239-01A	EIF2AK4	chr15	40241469	+	HMGN2P46	chr15	45847688	+
intron-3UTR	ENST00000559311	ENST00000409454		TCGA	LD	THCA	TCGA-FE-A239-01A	EIF2AK4	chr15	40241469	+	HMGN2P46	chr15	45847688	+
intron-3UTR	ENST00000410042	ENST00000434271		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-3UTR	ENST00000410042	ENST00000353047		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000530640		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000531089		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000453527		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000415599		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000345125		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000533455		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000534510		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000410042	ENST00000525076		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-3UTR	ENST00000338148	ENST00000434271		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-3UTR	ENST00000338148	ENST00000353047		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000530640		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000531089		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000453527		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000415599		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000345125		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000533455		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000534510		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
3UTR-intron	ENST00000338148	ENST00000525076		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-3UTR	ENST00000409145	ENST00000434271		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-3UTR	ENST00000409145	ENST00000353047		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000530640		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000531089		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000453527		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000415599		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000345125		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000533455		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000534510		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000409145	ENST00000525076		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-3UTR	ENST00000465432	ENST00000434271		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-3UTR	ENST00000465432	ENST00000353047		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000530640		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000531089		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000453527		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000415599		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000345125		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000533455		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000534510		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
intron-intron	ENST00000465432	ENST00000525076		TCGA	LD	THCA	TCGA-FE-A3PC-01A	MRPL30	chr2	99812714	+	CTSB	chr8	11700464	-
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-FK-A4UB-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-FK-A4UB-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
5CDS-3UTR	ENST00000271332	ENST00000256637		TCGA	LD	THCA	TCGA-FY-A3ON-01A	CELSR2	chr1	109816292	+	SORT1	chr1	109854907	-
5CDS-intron	ENST00000271332	ENST00000538502		TCGA	LD	THCA	TCGA-FY-A3ON-01A	CELSR2	chr1	109816292	+	SORT1	chr1	109854907	-
5CDS-intron	ENST00000271332	ENST00000482236		TCGA	LD	THCA	TCGA-FY-A3ON-01A	CELSR2	chr1	109816292	+	SORT1	chr1	109854907	-
3UTR-3UTR	ENST00000498157	ENST00000256637		TCGA	LD	THCA	TCGA-FY-A3ON-01A	CELSR2	chr1	109816292	+	SORT1	chr1	109854907	-
3UTR-intron	ENST00000498157	ENST00000538502		TCGA	LD	THCA	TCGA-FY-A3ON-01A	CELSR2	chr1	109816292	+	SORT1	chr1	109854907	-
3UTR-intron	ENST00000498157	ENST00000482236		TCGA	LD	THCA	TCGA-FY-A3ON-01A	CELSR2	chr1	109816292	+	SORT1	chr1	109854907	-
intron-3CDS	ENST00000209875	ENST00000400521		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000209875	ENST00000400519		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000209875	ENST00000535882		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000209875	ENST00000334363		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000209875	ENST00000400518		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000209875	ENST00000542719		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-5UTR	ENST00000209875	ENST00000491939		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000439541	ENST00000400521		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000439541	ENST00000400519		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000439541	ENST00000535882		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000439541	ENST00000334363		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000439541	ENST00000400518		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000439541	ENST00000542719		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-5UTR	ENST00000439541	ENST00000491939		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000550411	ENST00000400521		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000550411	ENST00000400519		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000550411	ENST00000535882		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000550411	ENST00000334363		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000550411	ENST00000400518		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-3CDS	ENST00000550411	ENST00000542719		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
intron-5UTR	ENST00000550411	ENST00000491939		TCGA	LD	THCA	TCGA-FY-A3WA-01A	CBX5	chr12	54635528	-	TXNRD2	chr22	19918621	-
5CDS-3UTR	ENST00000343916	ENST00000331925		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
5CDS-3UTR	ENST00000343916	ENST00000573283		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
5CDS-3UTR	ENST00000343916	ENST00000575842		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
5CDS-3UTR	ENST00000343916	ENST00000575087		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
intron-3UTR	ENST00000462700	ENST00000331925		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
intron-3UTR	ENST00000462700	ENST00000573283		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
intron-3UTR	ENST00000462700	ENST00000575842		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
intron-3UTR	ENST00000462700	ENST00000575087		TCGA	LD	THCA	TCGA-FY-A3WA-01A	COL9A3	chr20	61463541	+	ACTG1	chr17	79477355	-
5CDS-intron	ENST00000302475	ENST00000355178		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5CDS-intron	ENST00000302475	ENST00000282185		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5CDS-intron	ENST00000302475	ENST00000458350		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5CDS-intron	ENST00000302475	ENST00000513443		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5CDS-intron	ENST00000302475	ENST00000513634		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5CDS-3UTR	ENST00000302475	ENST00000514253		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5UTR-intron	ENST00000514701	ENST00000355178		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5UTR-intron	ENST00000514701	ENST00000282185		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5UTR-intron	ENST00000514701	ENST00000458350		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5UTR-intron	ENST00000514701	ENST00000513443		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5UTR-intron	ENST00000514701	ENST00000513634		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
5UTR-3UTR	ENST00000514701	ENST00000514253		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000515367	ENST00000355178		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000515367	ENST00000282185		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000515367	ENST00000458350		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000515367	ENST00000513443		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000515367	ENST00000513634		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-3UTR	ENST00000515367	ENST00000514253		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000408903	ENST00000355178		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000408903	ENST00000282185		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000408903	ENST00000458350		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000408903	ENST00000513443		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000408903	ENST00000513634		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-3UTR	ENST00000408903	ENST00000514253		TCGA	LD	THCA	TCGA-FY-A4B0-01A	MCC	chr5	112630026	-	ATG10	chr5	81571964	+
intron-intron	ENST00000550385	ENST00000299314		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000550385	ENST00000549940		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000550385	ENST00000392919		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-3UTR	ENST00000550385	ENST00000549165		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000229266	ENST00000299314		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000229266	ENST00000549940		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000229266	ENST00000392919		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-3UTR	ENST00000229266	ENST00000549165		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000549872	ENST00000299314		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000549872	ENST00000549940		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-intron	ENST00000549872	ENST00000392919		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
intron-3UTR	ENST00000549872	ENST00000549165		TCGA	LD	THCA	TCGA-H2-A3RI-01A	CHPT1	chr12	102136285	+	GNPTAB	chr12	102190318	-
In-frame	ENST00000263102	ENST00000355710		TCGA	LD	THCA	TCGA-J8-A4HW-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		TCGA	LD	THCA	TCGA-J8-A4HW-01A	CCDC6	chr10	61665880	-	RET	chr10	43612032	+
In-frame	ENST00000288602	ENST00000354725		TCGA	LD	THCA	TCGA-KS-A41I-01A	BRAF	chr7	140494108	-	SND1	chr7	127714554	+
5CDS-intron	ENST00000288602	ENST00000467238		TCGA	LD	THCA	TCGA-KS-A41I-01A	BRAF	chr7	140494108	-	SND1	chr7	127714554	+
intron-3UTR	ENST00000404072	ENST00000434271		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-3UTR	ENST00000404072	ENST00000353047		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000530640		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000531089		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000453527		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000415599		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000345125		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000533455		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000534510		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000404072	ENST00000525076		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-3UTR	ENST00000468288	ENST00000434271		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-3UTR	ENST00000468288	ENST00000353047		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000530640		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000531089		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000453527		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000415599		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000345125		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000533455		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000534510		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000468288	ENST00000525076		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-3UTR	ENST00000356976	ENST00000434271		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-3UTR	ENST00000356976	ENST00000353047		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000530640		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000531089		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000453527		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000415599		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000345125		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000533455		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000534510		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
intron-intron	ENST00000356976	ENST00000525076		TCGA	LD	THCA	TCGA-MK-A84Z-01A	PICK1	chr22	38463555	+	CTSB	chr8	11701063	-
5UTR-3CDS	ENST00000395555	ENST00000356175		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000395555	ENST00000358273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000395555	ENST00000431387		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000395555	ENST00000581113		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000395555	ENST00000417592		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000395555	ENST00000444181		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000494157	ENST00000356175		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000494157	ENST00000358273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000494157	ENST00000431387		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000494157	ENST00000581113		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000494157	ENST00000417592		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000494157	ENST00000444181		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000225740	ENST00000356175		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000225740	ENST00000358273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000225740	ENST00000431387		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000225740	ENST00000581113		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000225740	ENST00000417592		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000225740	ENST00000444181		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-3CDS	ENST00000444455	ENST00000356175		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-3CDS	ENST00000444455	ENST00000358273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000444455	ENST00000431387		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000444455	ENST00000581113		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000444455	ENST00000417592		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000444455	ENST00000444181		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-3CDS	ENST00000457500	ENST00000356175		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-3CDS	ENST00000457500	ENST00000358273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000457500	ENST00000431387		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000457500	ENST00000581113		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000457500	ENST00000417592		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
intron-intron	ENST00000457500	ENST00000444181		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000485231	ENST00000356175		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-3CDS	ENST00000485231	ENST00000358273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000485231	ENST00000431387		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000485231	ENST00000581113		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000485231	ENST00000417592		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
5UTR-intron	ENST00000485231	ENST00000444181		TCGA	RV	THYM	TCGA-ZB-A96L-01A	ALDH3A1	chr17	19651572	-	NF1	chr17	29585362	+
Frame-shit	ENST00000371547	ENST00000503581		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000371547	ENST00000370621		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000371547	ENST00000370616		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371547	ENST00000393380		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371547	ENST00000342421		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371547	ENST00000370618		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371547	ENST00000486069		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000371552	ENST00000503581		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000371552	ENST00000370621		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000371552	ENST00000370616		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371552	ENST00000393380		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371552	ENST00000342421		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371552	ENST00000370618		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000371552	ENST00000486069		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-3CDS	ENST00000371543	ENST00000503581		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-3CDS	ENST00000371543	ENST00000370621		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-3CDS	ENST00000371543	ENST00000370616		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000371543	ENST00000393380		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000371543	ENST00000342421		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000371543	ENST00000370618		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000371543	ENST00000486069		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000443748	ENST00000503581		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000443748	ENST00000370621		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000443748	ENST00000370616		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000443748	ENST00000393380		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000443748	ENST00000342421		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000443748	ENST00000370618		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000443748	ENST00000486069		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000260762	ENST00000503581		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000260762	ENST00000370621		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
Frame-shit	ENST00000260762	ENST00000370616		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000260762	ENST00000393380		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000260762	ENST00000342421		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000260762	ENST00000370618		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-intron	ENST00000260762	ENST00000486069		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-3CDS	ENST00000497262	ENST00000503581		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-3CDS	ENST00000497262	ENST00000370621		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-3CDS	ENST00000497262	ENST00000370616		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000497262	ENST00000393380		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000497262	ENST00000342421		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000497262	ENST00000370618		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
intron-intron	ENST00000497262	ENST00000486069		TCGA	RV	THYM	TCGA-X7-A8M0-01A	EXOC6	chr10	94774024	+	EYS	chr6	64776384	-
5CDS-5UTR	ENST00000388996	ENST00000314393		TCGA	RV	THYM	TCGA-ZB-A96L-01A	KCNQ3	chr8	133492394	-	ZHX2	chr8	123963532	+
intron-5UTR	ENST00000521134	ENST00000314393		TCGA	RV	THYM	TCGA-ZB-A96L-01A	KCNQ3	chr8	133492394	-	ZHX2	chr8	123963532	+
5CDS-5UTR	ENST00000519445	ENST00000314393		TCGA	RV	THYM	TCGA-ZB-A96L-01A	KCNQ3	chr8	133492394	-	ZHX2	chr8	123963532	+
Frame-shit	ENST00000381989	ENST00000247005		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	GDF1	chr19	18980199	-
intron-3CDS	ENST00000480576	ENST00000247005		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	GDF1	chr19	18980199	-
Frame-shit	ENST00000372420	ENST00000309311		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
5CDS-intron	ENST00000372420	ENST00000600720		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
Frame-shit	ENST00000372431	ENST00000309311		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
5CDS-intron	ENST00000372431	ENST00000600720		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
Frame-shit	ENST00000354050	ENST00000309311		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
5CDS-intron	ENST00000354050	ENST00000600720		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
Frame-shit	ENST00000477313	ENST00000309311		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
5CDS-intron	ENST00000477313	ENST00000600720		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
Frame-shit	ENST00000542937	ENST00000309311		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
5CDS-intron	ENST00000542937	ENST00000600720		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
intron-3CDS	ENST00000420868	ENST00000309311		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
intron-intron	ENST00000420868	ENST00000600720		TCGA	RV	THYM	TCGA-ZB-A965-01A	PLTP	chr20	44527399	-	EEF2	chr19	3985461	-
3UTR-intron	ENST00000263645	ENST00000264818		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000263645	ENST00000524462		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000263645	ENST00000525621		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000263645	ENST00000529370		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
3UTR-intron	ENST00000263645	ENST00000529422		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492627	ENST00000264818		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492627	ENST00000524462		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492627	ENST00000525621		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492627	ENST00000529370		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000492627	ENST00000529422		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000381036	ENST00000264818		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000381036	ENST00000524462		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000381036	ENST00000525621		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000381036	ENST00000529370		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000381036	ENST00000529422		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000526072	ENST00000264818		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000526072	ENST00000524462		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000526072	ENST00000525621		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000526072	ENST00000529370		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000526072	ENST00000529422		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000524805	ENST00000264818		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000524805	ENST00000524462		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000524805	ENST00000525621		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000524805	ENST00000529370		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000524805	ENST00000529422		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000481687	ENST00000264818		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000481687	ENST00000524462		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000481687	ENST00000525621		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000481687	ENST00000529370		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
intron-intron	ENST00000481687	ENST00000529422		TCGA	RV	THYM	TCGA-ZB-A96E-01A	CD81	chr11	2418627	+	TYK2	chr19	10491352	-
In-frame	ENST00000225428	ENST00000309428		TCGA	RV	THYM	TCGA-ZB-A961-01A	CWC25	chr17	36977154	-	FAM134C	chr17	40744180	-
5CDS-5UTR	ENST00000225428	ENST00000585894		TCGA	RV	THYM	TCGA-ZB-A961-01A	CWC25	chr17	36977154	-	FAM134C	chr17	40744180	-
5CDS-5UTR	ENST00000225428	ENST00000543197		TCGA	RV	THYM	TCGA-ZB-A961-01A	CWC25	chr17	36977154	-	FAM134C	chr17	40744180	-
5UTR-3CDS	ENST00000536127	ENST00000309428		TCGA	RV	THYM	TCGA-ZB-A961-01A	CWC25	chr17	36977154	-	FAM134C	chr17	40744180	-
5UTR-5UTR	ENST00000536127	ENST00000585894		TCGA	RV	THYM	TCGA-ZB-A961-01A	CWC25	chr17	36977154	-	FAM134C	chr17	40744180	-
5UTR-5UTR	ENST00000536127	ENST00000543197		TCGA	RV	THYM	TCGA-ZB-A961-01A	CWC25	chr17	36977154	-	FAM134C	chr17	40744180	-
5CDS-5UTR	ENST00000262809	ENST00000399409		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-5UTR	ENST00000262809	ENST00000216840		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-intron	ENST00000262809	ENST00000560777		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-5UTR	ENST00000262809	ENST00000559586		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-5UTR	ENST00000596124	ENST00000399409		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-5UTR	ENST00000596124	ENST00000216840		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-intron	ENST00000596124	ENST00000560777		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
5CDS-5UTR	ENST00000596124	ENST00000559586		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	ELL	chr19	18557558	-	RABGGTA	chr14	24740375	-
In-frame	ENST00000308482	ENST00000403299		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000308482	ENST00000406271		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000308482	ENST00000251973		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000308482	ENST00000494166		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
intron-3CDS	ENST00000468950	ENST00000403299		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
intron-intron	ENST00000468950	ENST00000406271		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
intron-intron	ENST00000468950	ENST00000251973		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
intron-intron	ENST00000468950	ENST00000494166		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
In-frame	ENST00000289175	ENST00000403299		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000289175	ENST00000406271		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000289175	ENST00000251973		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000289175	ENST00000494166		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
In-frame	ENST00000244815	ENST00000403299		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000244815	ENST00000406271		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000244815	ENST00000251973		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000244815	ENST00000494166		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
In-frame	ENST00000392000	ENST00000403299		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000392000	ENST00000406271		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000392000	ENST00000251973		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-intron	ENST00000392000	ENST00000494166		TCGA	RV	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37912305	-
5CDS-5UTR	ENST00000296473	ENST00000586178		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000296473	ENST00000415868		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000296473	ENST00000376381		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000296473	ENST00000593259		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000455683	ENST00000586178		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000455683	ENST00000415868		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000455683	ENST00000376381		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5CDS-5UTR	ENST00000455683	ENST00000593259		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000417270	ENST00000586178		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000417270	ENST00000415868		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000417270	ENST00000376381		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000417270	ENST00000593259		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000483022	ENST00000586178		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000483022	ENST00000415868		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000483022	ENST00000376381		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-5UTR	ENST00000483022	ENST00000593259		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MON1A	chr3	49967042	-	MBTD1	chr17	49302570	-
5UTR-3CDS	ENST00000425241	ENST00000285046		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
5UTR-3CDS	ENST00000425241	ENST00000543601		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
5UTR-3UTR	ENST00000425241	ENST00000476851		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
5UTR-3CDS	ENST00000323373	ENST00000285046		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
5UTR-3CDS	ENST00000323373	ENST00000543601		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
5UTR-3UTR	ENST00000323373	ENST00000476851		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000393102	ENST00000285046		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000393102	ENST00000543601		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000393102	ENST00000476851		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000406272	ENST00000285046		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000406272	ENST00000543601		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000406272	ENST00000476851		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000478572	ENST00000285046		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000478572	ENST00000543601		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000478572	ENST00000476851		TCGA	RV	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	14989413	+	FGD5	chr3	14974084	+
5UTR-3CDS	ENST00000373233	ENST00000375759		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
5UTR-intron	ENST00000373233	ENST00000471538		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
5UTR-3CDS	ENST00000309279	ENST00000375759		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
5UTR-intron	ENST00000309279	ENST00000471538		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
5UTR-3CDS	ENST00000373222	ENST00000375759		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
5UTR-intron	ENST00000373222	ENST00000471538		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
intron-3CDS	ENST00000480022	ENST00000375759		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
intron-intron	ENST00000480022	ENST00000471538		TCGA	RV	THYM	TCGA-ZB-A969-01A	CHD6	chr20	40246979	-	SPEN	chr1	16199311	+
In-frame	ENST00000443503	ENST00000301923		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000443503	ENST00000402203		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000443503	ENST00000454349		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000443503	ENST00000335727		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
5CDS-intron	ENST00000443503	ENST00000497559		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000273179	ENST00000301923		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000273179	ENST00000402203		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000273179	ENST00000454349		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
In-frame	ENST00000273179	ENST00000335727		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
5CDS-intron	ENST00000273179	ENST00000497559		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
intron-3CDS	ENST00000310189	ENST00000301923		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
intron-3CDS	ENST00000310189	ENST00000402203		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
intron-3CDS	ENST00000310189	ENST00000454349		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
intron-3CDS	ENST00000310189	ENST00000335727		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
intron-intron	ENST00000310189	ENST00000497559		TCGA	RV	THYM	TCGA-XM-A8RF-01A	CTDSPL	chr3	37988702	+	TNRC6B	chr22	40717094	+
5CDS-3UTR	ENST00000326427	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000326427	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326427	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000335005	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000335005	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000335005	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000326407	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000326407	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000326407	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409704	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000409704	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000409704	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000492029	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000492029	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000492029	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A962-01A	ITM2C	chr2	231743962	+	FOXP1	chr3	71007472	-
Frame-shit	ENST00000341520	ENST00000394752		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000341520	ENST00000394750		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000341520	ENST00000358080		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000341520	ENST00000296295		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
5CDS-intron	ENST00000341520	ENST00000470575		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000416649	ENST00000394752		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000416649	ENST00000394750		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000416649	ENST00000358080		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000416649	ENST00000296295		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
5CDS-intron	ENST00000416649	ENST00000470575		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000294129	ENST00000394752		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000294129	ENST00000394750		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000294129	ENST00000358080		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000294129	ENST00000296295		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
5CDS-intron	ENST00000294129	ENST00000470575		TCGA	RV	THYM	TCGA-ZB-A969-01A	NCKIPSD	chr3	48723070	-	SFMBT1	chr3	52968917	-
Frame-shit	ENST00000404138	ENST00000399763		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000404138	ENST00000399766		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000404138	ENST00000374343		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000404138	ENST00000470035		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000375647	ENST00000399763		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000375647	ENST00000399766		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000375647	ENST00000374343		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000375647	ENST00000470035		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374651	ENST00000399763		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374651	ENST00000399766		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000374651	ENST00000374343		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
5CDS-intron	ENST00000374651	ENST00000470035		TCGA	RV	THYM	TCGA-YT-A95D-01A	ZBTB40	chr1	22817138	+	TMEM57	chr1	25824755	+
Frame-shit	ENST00000336761	ENST00000361757		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
Frame-shit	ENST00000336761	ENST00000587024		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
Frame-shit	ENST00000336761	ENST00000438103		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
Frame-shit	ENST00000233078	ENST00000361757		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
Frame-shit	ENST00000233078	ENST00000587024		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
Frame-shit	ENST00000233078	ENST00000438103		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
3UTR-3CDS	ENST00000586579	ENST00000361757		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
3UTR-3CDS	ENST00000586579	ENST00000587024		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
3UTR-3CDS	ENST00000586579	ENST00000438103		TCGA	RV	THYM	TCGA-XU-A92V-01A	DAZAP1	chr19	1422395	+	SBNO2	chr19	1127764	-
5CDS-5UTR	ENST00000336596	ENST00000340001		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000336596	ENST00000453985		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000336596	ENST00000370732		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-intron	ENST00000336596	ENST00000482072		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000336596	ENST00000495634		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
intron-5UTR	ENST00000452448	ENST00000340001		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
intron-5UTR	ENST00000452448	ENST00000453985		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
intron-5UTR	ENST00000452448	ENST00000370732		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
intron-intron	ENST00000452448	ENST00000482072		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
intron-5UTR	ENST00000452448	ENST00000495634		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000494014	ENST00000340001		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000494014	ENST00000453985		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000494014	ENST00000370732		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-intron	ENST00000494014	ENST00000482072		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
5CDS-5UTR	ENST00000494014	ENST00000495634		TCGA	RV	THYM	TCGA-ZB-A96L-01A	EPHA3	chr3	89480509	+	ABCA9	chr17	67047280	-
Frame-shit	ENST00000225983	ENST00000444914		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000225983	ENST00000314669		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-intron	ENST00000225983	ENST00000545060		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-5UTR	ENST00000225983	ENST00000537681		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000393622	ENST00000444914		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000393622	ENST00000314669		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-intron	ENST00000393622	ENST00000545060		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-5UTR	ENST00000393622	ENST00000537681		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000336057	ENST00000444914		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000336057	ENST00000314669		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-intron	ENST00000336057	ENST00000545060		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-5UTR	ENST00000336057	ENST00000537681		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000586802	ENST00000444914		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
Frame-shit	ENST00000586802	ENST00000314669		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-intron	ENST00000586802	ENST00000545060		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
5CDS-5UTR	ENST00000586802	ENST00000537681		TCGA	RV	THYM	TCGA-ZB-A961-01A	HDAC5	chr17	42188097	-	SLC13A2	chr17	26816232	+
In-frame	ENST00000265563	ENST00000415676		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000265563	ENST00000288197		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000265563	ENST00000474759		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000265563	ENST00000490478		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
5CDS-intron	ENST00000265563	ENST00000478261		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000454963	ENST00000415676		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000454963	ENST00000288197		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000454963	ENST00000474759		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000454963	ENST00000490478		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
5CDS-intron	ENST00000454963	ENST00000478261		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000296446	ENST00000415676		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000296446	ENST00000288197		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000296446	ENST00000474759		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
In-frame	ENST00000296446	ENST00000490478		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
5CDS-intron	ENST00000296446	ENST00000478261		TCGA	RV	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48884768	-	CACNA2D3	chr3	54537519	+
Frame-shit	ENST00000366601	ENST00000413393		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000366601	ENST00000436190		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000366601	ENST00000300249		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000366601	ENST00000538170		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000366601	ENST00000588910		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000366601	ENST00000589699		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000366601	ENST00000590793		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000406207	ENST00000413393		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000406207	ENST00000436190		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000406207	ENST00000300249		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000406207	ENST00000538170		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000406207	ENST00000588910		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000406207	ENST00000589699		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000406207	ENST00000590793		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000543662	ENST00000413393		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000543662	ENST00000436190		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000543662	ENST00000300249		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000543662	ENST00000538170		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000543662	ENST00000588910		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
Frame-shit	ENST00000543662	ENST00000589699		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000543662	ENST00000590793		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000472011	ENST00000413393		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000472011	ENST00000436190		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000472011	ENST00000300249		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000472011	ENST00000538170		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000472011	ENST00000588910		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-3CDS	ENST00000472011	ENST00000589699		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
3UTR-intron	ENST00000472011	ENST00000590793		TCGA	RV	THYM	TCGA-ZB-A962-01A	TBCE	chr1	235606226	+	MAPRE2	chr18	32681910	+
5CDS-intron	ENST00000372715	ENST00000322776		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000372715	ENST00000532303		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000372715	ENST00000529927		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000372715	ENST00000415352		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000372715	ENST00000526169		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483181	ENST00000322776		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483181	ENST00000532303		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483181	ENST00000529927		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483181	ENST00000415352		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000483181	ENST00000526169		TCGA	RV	THYM	TCGA-ZB-A96B-01A	WDR34	chr9	131395940	-	NDUFV1	chr11	67375697	+
Frame-shit	ENST00000369681	ENST00000369689		TCGA	RV	THYM	TCGA-ZB-A966-01A	CYB5R4	chr6	84574047	+	RIPPLY2	chr6	84566961	+
Frame-shit	ENST00000369681	ENST00000369687		TCGA	RV	THYM	TCGA-ZB-A966-01A	CYB5R4	chr6	84574047	+	RIPPLY2	chr6	84566961	+
Frame-shit	ENST00000369679	ENST00000369689		TCGA	RV	THYM	TCGA-ZB-A966-01A	CYB5R4	chr6	84574047	+	RIPPLY2	chr6	84566961	+
Frame-shit	ENST00000369679	ENST00000369687		TCGA	RV	THYM	TCGA-ZB-A966-01A	CYB5R4	chr6	84574047	+	RIPPLY2	chr6	84566961	+
intron-3CDS	ENST00000479164	ENST00000369689		TCGA	RV	THYM	TCGA-ZB-A966-01A	CYB5R4	chr6	84574047	+	RIPPLY2	chr6	84566961	+
intron-3CDS	ENST00000479164	ENST00000369687		TCGA	RV	THYM	TCGA-ZB-A966-01A	CYB5R4	chr6	84574047	+	RIPPLY2	chr6	84566961	+
intron-5UTR	ENST00000406516	ENST00000425759		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406516	ENST00000292733		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406516	ENST00000542773		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406516	ENST00000263205		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406516	ENST00000406969		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406516	ENST00000382974		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000406516	ENST00000541476		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-intron	ENST00000406516	ENST00000478831		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000425759		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000292733		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000542773		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000263205		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000406969		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000382974		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000444929	ENST00000541476		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-intron	ENST00000444929	ENST00000478831		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000425759		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000292733		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000542773		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000263205		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000406969		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000382974		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-5UTR	ENST00000331728	ENST00000541476		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
5CDS-intron	ENST00000331728	ENST00000478831		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000425759		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000292733		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000542773		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000263205		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000406969		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000382974		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000333611	ENST00000541476		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-intron	ENST00000333611	ENST00000478831		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000425759		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000292733		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000542773		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000263205		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000406969		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000382974		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000340552	ENST00000541476		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-intron	ENST00000340552	ENST00000478831		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000425759		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000292733		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000542773		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000263205		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000406969		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000382974		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-5UTR	ENST00000467301	ENST00000541476		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
intron-intron	ENST00000467301	ENST00000478831		TCGA	RV	THYM	TCGA-XM-A8R9-01A	LIMK2	chr22	31621805	+	MED15	chr22	20891404	+
In-frame	ENST00000330909	ENST00000352241		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000448226		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000472437		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000328528		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000314589		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000394355		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000314557		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000394351		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000330909	ENST00000531774		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
5CDS-intron	ENST00000330909	ENST00000394348		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000352241		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000448226		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000472437		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000328528		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000314589		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000394355		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000314557		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000394351		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000402939	ENST00000531774		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
5CDS-intron	ENST00000402939	ENST00000394348		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000352241		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000448226		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000472437		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000328528		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000314589		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000394355		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000314557		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000394351		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000483466	ENST00000531774		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
5CDS-intron	ENST00000483466	ENST00000394348		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000352241		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000448226		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000472437		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000328528		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000314589		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000394355		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000314557		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000394351		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
In-frame	ENST00000497477	ENST00000531774		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
5CDS-intron	ENST00000497477	ENST00000394348		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000352241		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000448226		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000472437		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000328528		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000314589		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000394355		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000314557		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000394351		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-3CDS	ENST00000470990	ENST00000531774		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
intron-intron	ENST00000470990	ENST00000394348		TCGA	RV	THYM	TCGA-ZB-A969-01A	MAGI1	chr3	66023671	-	MITF	chr3	69998202	+
Frame-shit	ENST00000266037	ENST00000595645		TCGA	RV	THYM	TCGA-ZB-A96L-01A	DOCK3	chr3	50971508	+	TMIGD2	chr19	4294813	-
Frame-shit	ENST00000266037	ENST00000301272		TCGA	RV	THYM	TCGA-ZB-A96L-01A	DOCK3	chr3	50971508	+	TMIGD2	chr19	4294813	-
5CDS-intron	ENST00000266037	ENST00000600349		TCGA	RV	THYM	TCGA-ZB-A96L-01A	DOCK3	chr3	50971508	+	TMIGD2	chr19	4294813	-
5CDS-intron	ENST00000266037	ENST00000600114		TCGA	RV	THYM	TCGA-ZB-A96L-01A	DOCK3	chr3	50971508	+	TMIGD2	chr19	4294813	-
In-frame	ENST00000262809	ENST00000597960		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
In-frame	ENST00000262809	ENST00000610101		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
In-frame	ENST00000262809	ENST00000596558		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
In-frame	ENST00000262809	ENST00000222308		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
In-frame	ENST00000262809	ENST00000608443		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
In-frame	ENST00000262809	ENST00000453489		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
5UTR-3CDS	ENST00000596124	ENST00000597960		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
5UTR-3CDS	ENST00000596124	ENST00000610101		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
5UTR-3CDS	ENST00000596124	ENST00000596558		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
5UTR-3CDS	ENST00000596124	ENST00000222308		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
5UTR-3CDS	ENST00000596124	ENST00000608443		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
5UTR-3CDS	ENST00000596124	ENST00000453489		TCGA	RV	THYM	TCGA-ZB-A96I-01A	ELL	chr19	18583645	-	FKBP8	chr19	18644157	-
Frame-shit	ENST00000535601	ENST00000370648		TCGA	RV	THYM	TCGA-ZB-A965-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
Frame-shit	ENST00000218364	ENST00000370648		TCGA	RV	THYM	TCGA-ZB-A965-01A	HTATSF1	chrX	135586622	+	BRS3	chrX	135572292	+
intron-intron	ENST00000532456	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000532456	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000532456	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000532456	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000532456	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000539648	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000539648	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000539648	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000539648	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000539648	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000528499	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000528499	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000528499	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000528499	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000528499	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000263574	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000263574	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000263574	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000263574	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000263574	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000345598	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000345598	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000345598	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000345598	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000345598	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000338167	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000338167	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000338167	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000338167	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
intron-intron	ENST00000338167	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000278756	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000278756	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000278756	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000278756	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000278756	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000543137	ENST00000264818		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000543137	ENST00000524462		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000543137	ENST00000525621		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000543137	ENST00000529370		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5CDS-intron	ENST00000543137	ENST00000529422		TCGA	RV	THYM	TCGA-ZL-A9V6-01A	APLP2	chr11	130014699	+	TYK2	chr19	10491352	-
5UTR-3CDS	ENST00000353383	ENST00000355938		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
5UTR-3CDS	ENST00000353383	ENST00000503641		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
5UTR-3CDS	ENST00000353383	ENST00000514808		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
5UTR-3CDS	ENST00000353383	ENST00000393366		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
5UTR-intron	ENST00000353383	ENST00000506855		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
5UTR-3UTR	ENST00000353383	ENST00000513781		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000489697	ENST00000355938		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000489697	ENST00000503641		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000489697	ENST00000514808		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000489697	ENST00000393366		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-intron	ENST00000489697	ENST00000506855		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3UTR	ENST00000489697	ENST00000513781		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000261641	ENST00000355938		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000261641	ENST00000503641		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000261641	ENST00000514808		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3CDS	ENST00000261641	ENST00000393366		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-intron	ENST00000261641	ENST00000506855		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
intron-3UTR	ENST00000261641	ENST00000513781		TCGA	RV	THYM	TCGA-ZB-A961-01A	RAI1	chr17	17627473	+	ATP5G1	chr17	46971734	+
Frame-shit	ENST00000381061	ENST00000271069		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
Frame-shit	ENST00000381061	ENST00000373672		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
5CDS-intron	ENST00000381061	ENST00000461217		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
5CDS-intron	ENST00000381061	ENST00000373668		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
Frame-shit	ENST00000252934	ENST00000271069		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
Frame-shit	ENST00000252934	ENST00000373672		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
5CDS-intron	ENST00000252934	ENST00000461217		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
5CDS-intron	ENST00000252934	ENST00000373668		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-3CDS	ENST00000498009	ENST00000271069		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-3CDS	ENST00000498009	ENST00000373672		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-intron	ENST00000498009	ENST00000461217		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-intron	ENST00000498009	ENST00000373668		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-3CDS	ENST00000402380	ENST00000271069		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-3CDS	ENST00000402380	ENST00000373672		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-intron	ENST00000402380	ENST00000461217		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
intron-intron	ENST00000402380	ENST00000373668		TCGA	RV	THYM	TCGA-X7-A8D9-01A	ATXN10	chr22	46068059	+	COL16A1	chr1	32158110	-
5CDS-intron	ENST00000245932	ENST00000486478		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
5CDS-intron	ENST00000245932	ENST00000450089		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
5CDS-intron	ENST00000245932	ENST00000371201		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
5CDS-intron	ENST00000245932	ENST00000395552		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
3UTR-intron	ENST00000586619	ENST00000486478		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
3UTR-intron	ENST00000586619	ENST00000450089		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
3UTR-intron	ENST00000586619	ENST00000371201		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
3UTR-intron	ENST00000586619	ENST00000395552		TCGA	RV	THYM	TCGA-ZB-A96H-01A	VASP	chr19	46011034	+	C1orf87	chr1	60506803	-
Frame-shit	ENST00000367866	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000367866	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000367866	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000367866	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000367866	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000367866	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5CDS-intron	ENST00000367866	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5CDS-intron	ENST00000367866	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000452019	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000452019	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000452019	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000452019	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000452019	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000452019	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-intron	ENST00000452019	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-intron	ENST00000452019	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000429375	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000429375	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000429375	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000429375	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000429375	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
Frame-shit	ENST00000429375	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5CDS-intron	ENST00000429375	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5CDS-intron	ENST00000429375	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-3CDS	ENST00000367865	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-3CDS	ENST00000367865	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-3CDS	ENST00000367865	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-3CDS	ENST00000367865	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-3CDS	ENST00000367865	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-3CDS	ENST00000367865	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-intron	ENST00000367865	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
3UTR-intron	ENST00000367865	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000541643	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000541643	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000541643	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000541643	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000541643	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000541643	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-intron	ENST00000541643	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-intron	ENST00000541643	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000420254	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000420254	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000420254	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000420254	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000420254	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-3CDS	ENST00000420254	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-intron	ENST00000420254	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
5UTR-intron	ENST00000420254	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-3CDS	ENST00000367862	ENST00000290974		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-3CDS	ENST00000367862	ENST00000511071		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-3CDS	ENST00000367862	ENST00000515312		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-3CDS	ENST00000367862	ENST00000515169		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-3CDS	ENST00000367862	ENST00000509171		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-3CDS	ENST00000367862	ENST00000503000		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-intron	ENST00000367862	ENST00000508471		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
intron-intron	ENST00000367862	ENST00000505421		TCGA	RV	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2339223	-
In-frame	ENST00000402357	ENST00000337137		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000402357	ENST00000380995		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000402357	ENST00000407381		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000402357	ENST00000355704		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
5CDS-intron	ENST00000402357	ENST00000472791		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
5CDS-intron	ENST00000402357	ENST00000406733		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000358295	ENST00000337137		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000358295	ENST00000380995		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000358295	ENST00000407381		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
In-frame	ENST00000358295	ENST00000355704		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
5CDS-intron	ENST00000358295	ENST00000472791		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
5CDS-intron	ENST00000358295	ENST00000406733		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000473898	ENST00000337137		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000473898	ENST00000380995		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000473898	ENST00000407381		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000473898	ENST00000355704		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-intron	ENST00000473898	ENST00000472791		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-intron	ENST00000473898	ENST00000406733		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000406880	ENST00000337137		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000406880	ENST00000380995		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000406880	ENST00000407381		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-3CDS	ENST00000406880	ENST00000355704		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-intron	ENST00000406880	ENST00000472791		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
intron-intron	ENST00000406880	ENST00000406733		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM19A5	chr22	49042558	+	TBC1D22A	chr22	47274549	+
5UTR-3CDS	ENST00000318789	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000318789	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000318789	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000318789	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000318789	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000475937	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000475937	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000475937	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000475937	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000475937	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000493089	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000493089	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000493089	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000493089	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000493089	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000484350	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000484350	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000484350	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000484350	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000484350	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000318779	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-3CDS	ENST00000318779	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000318779	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000318779	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5UTR-5UTR	ENST00000318779	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000491238	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000491238	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000491238	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000491238	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000491238	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000498215	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000498215	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000498215	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000498215	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000498215	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000468577	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000468577	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000468577	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000468577	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000468577	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000472382	ENST00000476844		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-3CDS	ENST00000472382	ENST00000492590		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000472382	ENST00000466788		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000472382	ENST00000468189		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
intron-5UTR	ENST00000472382	ENST00000341848		TCGA	RV	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59908140	-
5CDS-3UTR	ENST00000361757	ENST00000591727		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000361757	ENST00000339133		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000361757	ENST00000397555		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000587024	ENST00000591727		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000587024	ENST00000339133		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000587024	ENST00000397555		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000438103	ENST00000591727		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000438103	ENST00000339133		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
intron-3UTR	ENST00000438103	ENST00000397555		TCGA	RV	THYM	TCGA-XU-A92V-01A	SBNO2	chr19	1147308	-	NANOS3	chr19	13991256	+
5CDS-3UTR	ENST00000221561	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000221561	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000221561	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000327141	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000327141	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000327141	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000592330	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000592330	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000592330	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000586839	ENST00000318789		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000586839	ENST00000475937		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000493089		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000484350		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000318779		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000491238		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000498215		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000468577		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
intron-intron	ENST00000586839	ENST00000472382		TCGA	RV	THYM	TCGA-ZB-A96E-01A	AES	chr19	3052908	-	FOXP1	chr3	71007472	-
In-frame	ENST00000333407	ENST00000381669		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM83F	chr22	40391535	+	BAIAP2L2	chr22	38494489	-
In-frame	ENST00000333407	ENST00000332536		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM83F	chr22	40391535	+	BAIAP2L2	chr22	38494489	-
3UTR-3CDS	ENST00000488874	ENST00000381669		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM83F	chr22	40391535	+	BAIAP2L2	chr22	38494489	-
3UTR-3CDS	ENST00000488874	ENST00000332536		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM83F	chr22	40391535	+	BAIAP2L2	chr22	38494489	-
intron-3CDS	ENST00000473717	ENST00000381669		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM83F	chr22	40391535	+	BAIAP2L2	chr22	38494489	-
intron-3CDS	ENST00000473717	ENST00000332536		TCGA	RV	THYM	TCGA-5K-AAAP-01A	FAM83F	chr22	40391535	+	BAIAP2L2	chr22	38494489	-
Frame-shit	ENST00000354329	ENST00000589222		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000354329	ENST00000407086		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000354329	ENST00000390652		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000354329	ENST00000408905		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000354329	ENST00000588462		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000354329	ENST00000585744		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000354329	ENST00000588874		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000354329	ENST00000585812		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000589222		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000407086		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000390652		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000408905		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000588462		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000585744		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-3CDS	ENST00000529578	ENST00000588874		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
intron-intron	ENST00000529578	ENST00000585812		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000589222		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000407086		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000390652		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000408905		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000588462		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000585744		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000533112	ENST00000588874		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000533112	ENST00000585812		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000589222		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000407086		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000390652		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000408905		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000588462		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000585744		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000531253	ENST00000588874		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000531253	ENST00000585812		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000589222		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000407086		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000390652		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000408905		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000588462		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000585744		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000527372	ENST00000588874		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
5CDS-intron	ENST00000527372	ENST00000585812		TCGA	RV	THYM	TCGA-ZB-A96L-01A	MYO18A	chr17	27492960	-	BCAS3	chr17	58987893	+
Frame-shit	ENST00000253251	ENST00000294435		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10075840	+
5UTR-3CDS	ENST00000377157	ENST00000294435		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10075840	+
Frame-shit	ENST00000343090	ENST00000294435		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10075840	+
Frame-shit	ENST00000377153	ENST00000294435		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10075840	+
intron-3CDS	ENST00000475795	ENST00000294435		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	UBE4B	chr1	10093752	+	RBP7	chr1	10075840	+
In-frame	ENST00000371191	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371191	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371191	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371191	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371191	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000407417	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000407417	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000407417	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000407417	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000407417	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
Frame-shit	ENST00000479364	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000479364	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000479364	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000479364	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000479364	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000371189	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371189	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371189	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371189	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371189	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000403491	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000403491	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000403491	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000403491	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000403491	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000371187	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371187	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371187	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371187	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371187	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000485903	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000485903	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000485903	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000485903	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000485903	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000371185	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371185	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371185	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371185	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371185	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000371184	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371184	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371184	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371184	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000371184	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
In-frame	ENST00000357977	ENST00000261692		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000357977	ENST00000538446		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000357977	ENST00000535979		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000357977	ENST00000542174		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000357977	ENST00000544658		TCGA	RV	THYM	TCGA-XU-A92Z-01A	NFIA	chr1	61872399	+	CDK2AP1	chr12	123751829	-
5CDS-5UTR	ENST00000255608	ENST00000359904		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-5UTR	ENST00000255608	ENST00000580753		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-5UTR	ENST00000255608	ENST00000392720		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-5UTR	ENST00000255608	ENST00000359783		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-5UTR	ENST00000255608	ENST00000577866		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-3UTR	ENST00000255608	ENST00000585050		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-intron	ENST00000255608	ENST00000577985		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-intron	ENST00000255608	ENST00000577273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000590646	ENST00000359904		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000590646	ENST00000580753		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000590646	ENST00000392720		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000590646	ENST00000359783		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-5UTR	ENST00000590646	ENST00000577866		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-3UTR	ENST00000590646	ENST00000585050		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-intron	ENST00000590646	ENST00000577985		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
intron-intron	ENST00000590646	ENST00000577273		TCGA	RV	THYM	TCGA-ZB-A96L-01A	BTBD2	chr19	2015296	-	AMZ2	chr17	66244781	+
5CDS-3UTR	ENST00000313949	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000313949	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000313949	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371098	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371098	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371098	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371075	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371075	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371075	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371100	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371100	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371100	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371099	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371099	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371099	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371102	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371102	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371102	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000464624	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000464624	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000464624	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000306120	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000306120	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000306120	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371095	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371095	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371095	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371085	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000371085	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000371085	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000354359	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000354359	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000354359	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000265620	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000265620	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000265620	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000306090	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-3UTR	ENST00000306090	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
5CDS-intron	ENST00000306090	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371081	ENST00000318789		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-3UTR	ENST00000371081	ENST00000475937		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000493089		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000484350		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000318779		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000491238		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000498215		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000468577		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
intron-intron	ENST00000371081	ENST00000472382		TCGA	RV	THYM	TCGA-XU-A92U-01A	GNAS	chr20	57486241	+	FOXP1	chr3	71007472	-
In-frame	ENST00000477973	ENST00000476844		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
In-frame	ENST00000477973	ENST00000492590		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000477973	ENST00000466788		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000477973	ENST00000468189		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
5CDS-5UTR	ENST00000477973	ENST00000341848		TCGA	RV	THYM	TCGA-4V-A9QJ-01A	RYBP	chr3	72495647	-	FHIT	chr3	59738047	-
3UTR-5UTR	ENST00000466801	ENST00000421826		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000466801	ENST00000230582		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-intron	ENST00000466801	ENST00000377456		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000409321	ENST00000421826		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000409321	ENST00000230582		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-intron	ENST00000409321	ENST00000377456		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000409115	ENST00000421826		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000409115	ENST00000230582		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-intron	ENST00000409115	ENST00000377456		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000341369	ENST00000421826		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000341369	ENST00000230582		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-intron	ENST00000341369	ENST00000377456		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000409683	ENST00000421826		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-5UTR	ENST00000409683	ENST00000230582		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
3UTR-intron	ENST00000409683	ENST00000377456		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
intron-5UTR	ENST00000410064	ENST00000421826		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
intron-5UTR	ENST00000410064	ENST00000230582		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
intron-intron	ENST00000410064	ENST00000377456		TCGA	LD	THYM	TCGA-3G-AB19-01A	PTMA	chr2	232577666	+	PRSS16	chr6	27215502	+
5UTR-3CDS	ENST00000358409	ENST00000537971		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000358409	ENST00000011898		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000358409	ENST00000407263		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3UTR	ENST00000358409	ENST00000492305		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000359864	ENST00000537971		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000359864	ENST00000011898		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000359864	ENST00000407263		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3UTR	ENST00000359864	ENST00000492305		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000397122	ENST00000537971		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000397122	ENST00000011898		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3CDS	ENST00000397122	ENST00000407263		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
5UTR-3UTR	ENST00000397122	ENST00000492305		TCGA	LD	THYM	TCGA-3S-A8YW-01A	TEAD4	chr12	3069206	+	TSPAN9	chr12	3387587	+
Frame-shit	ENST00000313640	ENST00000458659		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000313640	ENST00000501704		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000313640	ENST00000261489		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000313640	ENST00000460842		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
Frame-shit	ENST00000313624	ENST00000458659		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000313624	ENST00000501704		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000313624	ENST00000261489		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000313624	ENST00000460842		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
Frame-shit	ENST00000398762	ENST00000458659		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000398762	ENST00000501704		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000398762	ENST00000261489		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-intron	ENST00000398762	ENST00000460842		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5UTR-3CDS	ENST00000476830	ENST00000458659		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000476830	ENST00000501704		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000476830	ENST00000261489		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5UTR-intron	ENST00000476830	ENST00000460842		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	EPSTI1	chr13	43566114	-	TSC22D1	chr13	45010231	-
5CDS-3UTR	ENST00000381989	ENST00000427170		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	CERS1	chr19	18980199	-
5CDS-intron	ENST00000381989	ENST00000429504		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	CERS1	chr19	18980199	-
5CDS-intron	ENST00000381989	ENST00000542296		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	CERS1	chr19	18980199	-
intron-3UTR	ENST00000480576	ENST00000427170		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	CERS1	chr19	18980199	-
intron-intron	ENST00000480576	ENST00000429504		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	CERS1	chr19	18980199	-
intron-intron	ENST00000480576	ENST00000542296		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PARP4	chr13	25008533	-	CERS1	chr19	18980199	-
intron-intron	ENST00000438932	ENST00000414155		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PNMAL1	chr19	46974250	-	PPP5D1	chr19	46985472	-
intron-intron	ENST00000438932	ENST00000595691		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PNMAL1	chr19	46974250	-	PPP5D1	chr19	46985472	-
intron-intron	ENST00000313683	ENST00000414155		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PNMAL1	chr19	46974250	-	PPP5D1	chr19	46985472	-
intron-intron	ENST00000313683	ENST00000595691		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PNMAL1	chr19	46974250	-	PPP5D1	chr19	46985472	-
intron-intron	ENST00000602246	ENST00000414155		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PNMAL1	chr19	46974250	-	PPP5D1	chr19	46985472	-
intron-intron	ENST00000602246	ENST00000595691		TCGA	LD	THYM	TCGA-4V-A9QJ-01A	PNMAL1	chr19	46974250	-	PPP5D1	chr19	46985472	-
3UTR-5UTR	ENST00000253451	ENST00000374690		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-3UTR	ENST00000253451	ENST00000513847		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-5UTR	ENST00000253451	ENST00000504326		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-intron	ENST00000253451	ENST00000396044		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-intron	ENST00000253451	ENST00000396043		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-5UTR	ENST00000390669	ENST00000374690		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-3UTR	ENST00000390669	ENST00000513847		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-5UTR	ENST00000390669	ENST00000504326		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-intron	ENST00000390669	ENST00000396044		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
3UTR-intron	ENST00000390669	ENST00000396043		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
intron-5UTR	ENST00000315626	ENST00000374690		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
intron-3UTR	ENST00000315626	ENST00000513847		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
intron-5UTR	ENST00000315626	ENST00000504326		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
intron-intron	ENST00000315626	ENST00000396044		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
intron-intron	ENST00000315626	ENST00000396043		TCGA	LD	THYM	TCGA-4V-A9QR-01A	CCL25	chr19	8127459	+	AR	chrX	66764976	+
intron-3CDS	ENST00000319023	ENST00000398531		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000319023	ENST00000376536		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000539574	ENST00000398531		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000539574	ENST00000376536		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000530055	ENST00000398531		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000530055	ENST00000376536		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000526039	ENST00000398531		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000526039	ENST00000376536		TCGA	LD	THYM	TCGA-4X-A9FA-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
Frame-shit	ENST00000263390	ENST00000316939		TCGA	LD	THYM	TCGA-5U-AB0D-01A	MED26	chr19	16738683	-	GADD45GIP1	chr19	13065340	-
intron-3CDS	ENST00000425241	ENST00000285046		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000425241	ENST00000543601		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000425241	ENST00000476851		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000323373	ENST00000285046		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000323373	ENST00000543601		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000323373	ENST00000476851		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
5UTR-3CDS	ENST00000393102	ENST00000285046		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
5UTR-3CDS	ENST00000393102	ENST00000543601		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
5UTR-3UTR	ENST00000393102	ENST00000476851		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000406272	ENST00000285046		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000406272	ENST00000543601		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000406272	ENST00000476851		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000478572	ENST00000285046		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3CDS	ENST00000478572	ENST00000543601		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-3UTR	ENST00000478572	ENST00000476851		TCGA	LD	THYM	TCGA-5U-AB0D-01A	NR2C2	chr3	15003999	+	FGD5	chr3	14974084	+
intron-5UTR	ENST00000374282	ENST00000426559		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374282	ENST00000455785		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374282	ENST00000399728		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374282	ENST00000465604		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374282	ENST00000357865		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374282	ENST00000374291		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374284	ENST00000426559		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374284	ENST00000455785		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374284	ENST00000399728		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374284	ENST00000465604		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374284	ENST00000357865		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000374284	ENST00000374291		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000493892	ENST00000426559		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000493892	ENST00000455785		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000493892	ENST00000399728		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000493892	ENST00000465604		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000493892	ENST00000357865		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
intron-5UTR	ENST00000493892	ENST00000374291		TCGA	LD	THYM	TCGA-X7-A8D6-01A	PAFAH2	chr1	26288188	-	STMN1	chr1	26231230	-
5UTR-5UTR	ENST00000341426	ENST00000478691		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000341426	ENST00000374616		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000341426	ENST00000476660		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000341426	ENST00000374612		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000341426	ENST00000302271		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000341426	ENST00000427764		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000341426	ENST00000606561		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000341426	ENST00000426846		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000341991	ENST00000478691		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000341991	ENST00000374616		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000341991	ENST00000476660		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000341991	ENST00000374612		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000341991	ENST00000302271		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000341991	ENST00000427764		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000341991	ENST00000606561		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000341991	ENST00000426846		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000378625	ENST00000478691		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000378625	ENST00000374616		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000378625	ENST00000476660		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000378625	ENST00000374612		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000378625	ENST00000302271		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000378625	ENST00000427764		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000378625	ENST00000606561		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000378625	ENST00000426846		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000344463	ENST00000478691		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000344463	ENST00000374616		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000344463	ENST00000476660		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000344463	ENST00000374612		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000344463	ENST00000302271		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000344463	ENST00000427764		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000344463	ENST00000606561		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000344463	ENST00000426846		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000492768	ENST00000478691		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000492768	ENST00000374616		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000492768	ENST00000476660		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000492768	ENST00000374612		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000492768	ENST00000302271		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-intron	ENST00000492768	ENST00000427764		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000492768	ENST00000606561		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
5UTR-5UTR	ENST00000492768	ENST00000426846		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000342348	ENST00000478691		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000342348	ENST00000374616		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000342348	ENST00000476660		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000342348	ENST00000374612		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000342348	ENST00000302271		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-intron	ENST00000342348	ENST00000427764		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000342348	ENST00000606561		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-5UTR	ENST00000342348	ENST00000426846		TCGA	LD	THYM	TCGA-X7-A8D9-01A	NADK	chr1	1709728	-	HNRNPR	chr1	23665101	-
intron-3CDS	ENST00000319023	ENST00000398531		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000319023	ENST00000376536		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000539574	ENST00000398531		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000539574	ENST00000376536		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000530055	ENST00000398531		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000530055	ENST00000376536		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000526039	ENST00000398531		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
intron-3CDS	ENST00000526039	ENST00000376536		TCGA	LD	THYM	TCGA-X7-A8DE-01A	NADSYN1	chr11	71232250	+	KRTAP5-10	chr11	71277166	+
Frame-shit	ENST00000404910	ENST00000402734		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000404910	ENST00000407025		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000404910	ENST00000272983		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000404910	ENST00000234038		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000404910	ENST00000404405		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000404910	ENST00000406106		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000404910	ENST00000401987		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
5CDS-3UTR	ENST00000404910	ENST00000485630		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000402734		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000407025		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000272983		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000234038		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000404405		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000406106		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000254661	ENST00000401987		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
5CDS-3UTR	ENST00000254661	ENST00000485630		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000402734		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000407025		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000272983		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000234038		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000404405		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000406106		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000409726	ENST00000401987		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
5CDS-3UTR	ENST00000409726	ENST00000485630		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000402734		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000407025		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000272983		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000234038		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000404405		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000406106		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
Frame-shit	ENST00000403885	ENST00000401987		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
5CDS-3UTR	ENST00000403885	ENST00000485630		TCGA	LD	THYM	TCGA-XH-A853-01A	RAMP1	chr2	238786004	+	PPP1R7	chr2	242097222	+
intron-3CDS	ENST00000397170	ENST00000307768		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-intron	ENST00000397170	ENST00000489724		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-3CDS	ENST00000383811	ENST00000307768		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-intron	ENST00000383811	ENST00000489724		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-3CDS	ENST00000452070	ENST00000307768		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-intron	ENST00000452070	ENST00000489724		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-3CDS	ENST00000326434	ENST00000307768		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-intron	ENST00000326434	ENST00000489724		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-3CDS	ENST00000489674	ENST00000307768		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-intron	ENST00000489674	ENST00000489724		TCGA	LD	THYM	TCGA-XM-A8RE-01A	CRELD1	chr3	9979847	+	JAGN1	chr3	9934886	+
intron-3CDS	ENST00000319023	ENST00000398531		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000319023	ENST00000376536		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000539574	ENST00000398531		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000539574	ENST00000376536		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000530055	ENST00000398531		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000530055	ENST00000376536		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000526039	ENST00000398531		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
intron-3CDS	ENST00000526039	ENST00000376536		TCGA	LD	THYM	TCGA-XM-AAZ3-01A	NADSYN1	chr11	71235153	+	KRTAP5-10	chr11	71277153	+
5CDS-5UTR	ENST00000308482	ENST00000403299		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000308482	ENST00000406271		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000308482	ENST00000251973		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000308482	ENST00000494166		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
intron-5UTR	ENST00000468950	ENST00000403299		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
intron-intron	ENST00000468950	ENST00000406271		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
intron-5UTR	ENST00000468950	ENST00000251973		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
intron-intron	ENST00000468950	ENST00000494166		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000289175	ENST00000403299		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000289175	ENST00000406271		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000289175	ENST00000251973		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000289175	ENST00000494166		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000244815	ENST00000403299		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000244815	ENST00000406271		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000244815	ENST00000251973		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000244815	ENST00000494166		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000392000	ENST00000403299		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000392000	ENST00000406271		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-5UTR	ENST00000392000	ENST00000251973		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
5CDS-intron	ENST00000392000	ENST00000494166		TCGA	LD	THYM	TCGA-XU-A92V-01A	LRRFIP1	chr2	238668848	+	CARD10	chr22	37915224	-
3UTR-3CDS	ENST00000525037	ENST00000225983		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
3UTR-3CDS	ENST00000525037	ENST00000393622		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
3UTR-3CDS	ENST00000525037	ENST00000336057		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
3UTR-3CDS	ENST00000525037	ENST00000586802		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000530173	ENST00000225983		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000530173	ENST00000393622		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000530173	ENST00000336057		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000530173	ENST00000586802		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000322157	ENST00000225983		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000322157	ENST00000393622		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000322157	ENST00000336057		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000322157	ENST00000586802		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000544660	ENST00000225983		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000544660	ENST00000393622		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000544660	ENST00000336057		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
In-frame	ENST00000544660	ENST00000586802		TCGA	LD	THYM	TCGA-ZB-A961-01A	NPEPPS	chr17	45623359	+	HDAC5	chr17	42171202	-
Frame-shit	ENST00000589037	ENST00000341165		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589037	ENST00000422280		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589037	ENST00000542611		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589037	ENST00000590996		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589037	ENST00000389312		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589037	ENST00000589872		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000253788	ENST00000341165		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000253788	ENST00000422280		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000253788	ENST00000542611		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000253788	ENST00000590996		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000253788	ENST00000389312		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000253788	ENST00000589872		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589913	ENST00000341165		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589913	ENST00000422280		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589913	ENST00000542611		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589913	ENST00000590996		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589913	ENST00000389312		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
Frame-shit	ENST00000589913	ENST00000589872		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
intron-3CDS	ENST00000590864	ENST00000341165		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
intron-3CDS	ENST00000590864	ENST00000422280		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
intron-3CDS	ENST00000590864	ENST00000542611		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
intron-3CDS	ENST00000590864	ENST00000590996		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
intron-3CDS	ENST00000590864	ENST00000389312		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
intron-3CDS	ENST00000590864	ENST00000589872		TCGA	LD	THYM	TCGA-ZB-A962-01A	RPL27	chr17	41150848	+	NBR1	chr17	41348498	+
5CDS-5UTR	ENST00000348697	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
5CDS-5UTR	ENST00000402984	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
5CDS-5UTR	ENST00000262722	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
5CDS-5UTR	ENST00000327858	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
5CDS-5UTR	ENST00000442170	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
5CDS-5UTR	ENST00000340923	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
3UTR-5UTR	ENST00000476366	ENST00000439119		TCGA	LD	THYM	TCGA-ZB-A963-01A	FBLN1	chr22	45946495	+	P2RX6P	chr22	21398588	-
Frame-shit	ENST00000400451	ENST00000544604		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000400451	ENST00000332811		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000400451	ENST00000402174		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000400451	ENST00000406323		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000403682	ENST00000544604		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000403682	ENST00000332811		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000403682	ENST00000402174		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000403682	ENST00000406323		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
intron-3CDS	ENST00000357502	ENST00000544604		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
intron-3CDS	ENST00000357502	ENST00000332811		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
intron-3CDS	ENST00000357502	ENST00000402174		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
intron-3CDS	ENST00000357502	ENST00000406323		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000356671	ENST00000544604		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000356671	ENST00000332811		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000356671	ENST00000402174		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000356671	ENST00000406323		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000405993	ENST00000544604		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000405993	ENST00000332811		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000405993	ENST00000402174		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000405993	ENST00000406323		TCGA	LD	THYM	TCGA-ZB-A963-01A	ZNF74	chr22	20748952	+	ZNRF3	chr22	29444377	+
Frame-shit	ENST00000545951	ENST00000543385		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000545951	ENST00000336727		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000545951	ENST00000344733		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000545951	ENST00000382788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000545951	ENST00000306648		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000545951	ENST00000338806		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000545951	ENST00000508158		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000545951	ENST00000538395		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000382839	ENST00000543385		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000382839	ENST00000336727		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000382839	ENST00000344733		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000382839	ENST00000382788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000382839	ENST00000306648		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000382839	ENST00000338806		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000382839	ENST00000508158		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000382839	ENST00000538395		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000324666	ENST00000543385		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000324666	ENST00000336727		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000324666	ENST00000344733		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000324666	ENST00000382788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000324666	ENST00000306648		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000324666	ENST00000338806		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000324666	ENST00000508158		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000324666	ENST00000538395		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000502458	ENST00000543385		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000502458	ENST00000336727		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000502458	ENST00000344733		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000502458	ENST00000382788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000502458	ENST00000306648		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000502458	ENST00000338806		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000502458	ENST00000508158		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000502458	ENST00000538395		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000505311	ENST00000543385		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000505311	ENST00000336727		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000505311	ENST00000344733		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000505311	ENST00000382788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000505311	ENST00000306648		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
Frame-shit	ENST00000505311	ENST00000338806		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000505311	ENST00000508158		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5CDS-3UTR	ENST00000505311	ENST00000538395		TCGA	LD	THYM	TCGA-ZB-A969-01A	FAM193A	chr4	2641586	+	RGS12	chr4	3415799	+
5UTR-3CDS	ENST00000318789	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000318789	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000318789	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000318789	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000318789	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000475937	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000475937	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000475937	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000475937	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000475937	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000493089	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000493089	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000493089	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000493089	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000493089	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000484350	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000484350	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000484350	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000484350	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000484350	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000318779	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000318779	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000318779	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000318779	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-5UTR	ENST00000318779	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000491238	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000491238	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000491238	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000491238	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000491238	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000498215	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000498215	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000498215	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000498215	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000498215	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000468577	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000468577	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000468577	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000468577	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000468577	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000472382	ENST00000476844		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-3CDS	ENST00000472382	ENST00000492590		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000472382	ENST00000466788		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000472382	ENST00000468189		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
intron-5UTR	ENST00000472382	ENST00000341848		TCGA	LD	THYM	TCGA-ZB-A969-01A	FOXP1	chr3	71348971	-	FHIT	chr3	59738047	-
5UTR-3CDS	ENST00000399353	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399353	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000399353	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000381318	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381318	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000381318	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000381291	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381291	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000381291	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000381285	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000381285	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000381285	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000399367	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399367	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000399367	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000399352	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399352	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000399352	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000399355	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399355	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000399355	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3CDS	ENST00000399349	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-3UTR	ENST00000399349	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
5UTR-intron	ENST00000399349	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3CDS	ENST00000399338	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399338	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-intron	ENST00000399338	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3CDS	ENST00000379960	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000379960	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-intron	ENST00000379960	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3CDS	ENST00000437442	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000437442	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-intron	ENST00000437442	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3CDS	ENST00000399326	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000399326	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-intron	ENST00000399326	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3CDS	ENST00000488166	ENST00000545939		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000286791		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000399934		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000341618		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000399935		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000399947		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000339024		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000399928		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000399926		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-3UTR	ENST00000488166	ENST00000399925		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
intron-intron	ENST00000488166	ENST00000496779		TCGA	LD	THYM	TCGA-ZB-A969-01A	ITSN1	chr21	35015019	+	MAP3K7CL	chr21	30532262	+
Frame-shit	ENST00000367866	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
Frame-shit	ENST00000367866	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
Frame-shit	ENST00000367866	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000367866	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000367866	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000367866	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000367866	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000367866	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000452019	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000452019	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000452019	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000452019	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000452019	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000452019	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000452019	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000452019	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
Frame-shit	ENST00000429375	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
Frame-shit	ENST00000429375	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
Frame-shit	ENST00000429375	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000429375	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000429375	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000429375	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000429375	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5CDS-intron	ENST00000429375	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-3CDS	ENST00000367865	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-3CDS	ENST00000367865	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-3CDS	ENST00000367865	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-intron	ENST00000367865	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-intron	ENST00000367865	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-intron	ENST00000367865	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-intron	ENST00000367865	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
3UTR-intron	ENST00000367865	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000541643	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000541643	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000541643	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000541643	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000541643	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000541643	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000541643	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000541643	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000420254	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000420254	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-3CDS	ENST00000420254	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000420254	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000420254	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000420254	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000420254	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
5UTR-intron	ENST00000420254	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000367862	ENST00000290974		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000367862	ENST00000511071		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-3CDS	ENST00000367862	ENST00000515312		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000367862	ENST00000515169		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000367862	ENST00000509171		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000367862	ENST00000503000		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000367862	ENST00000508471		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
intron-intron	ENST00000367862	ENST00000505421		TCGA	LD	THYM	TCGA-ZB-A969-01A	POU2F1	chr1	167190195	+	ZFYVE28	chr4	2321998	-
Frame-shit	ENST00000376048	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
Frame-shit	ENST00000311066	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
Frame-shit	ENST00000235372	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
3UTR-3CDS	ENST00000502727	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
5UTR-3CDS	ENST00000413440	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
5UTR-3CDS	ENST00000343137	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
5UTR-3CDS	ENST00000503842	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
5UTR-3CDS	ENST00000505823	ENST00000376085		TCGA	LD	THYM	TCGA-ZB-A969-01A	PRDM2	chr1	14075982	+	LRRC38	chr1	13802567	-
Frame-shit	ENST00000216254	ENST00000404699		TCGA	LD	THYM	TCGA-ZB-A96G-01A	ACO2	chr22	41865186	+	ISX	chr22	35478511	+
Frame-shit	ENST00000216254	ENST00000308700		TCGA	LD	THYM	TCGA-ZB-A96G-01A	ACO2	chr22	41865186	+	ISX	chr22	35478511	+
Frame-shit	ENST00000396512	ENST00000404699		TCGA	LD	THYM	TCGA-ZB-A96G-01A	ACO2	chr22	41865186	+	ISX	chr22	35478511	+
Frame-shit	ENST00000396512	ENST00000308700		TCGA	LD	THYM	TCGA-ZB-A96G-01A	ACO2	chr22	41865186	+	ISX	chr22	35478511	+
intron-3CDS	ENST00000466237	ENST00000404699		TCGA	LD	THYM	TCGA-ZB-A96G-01A	ACO2	chr22	41865186	+	ISX	chr22	35478511	+
intron-3CDS	ENST00000466237	ENST00000308700		TCGA	LD	THYM	TCGA-ZB-A96G-01A	ACO2	chr22	41865186	+	ISX	chr22	35478511	+
5CDS-3UTR	ENST00000447092	ENST00000418948		TCGA	LD	THYM	TCGA-ZB-A96L-01A	HYAL2	chr3	50356387	-	SEMA3B	chr3	50306593	+
5CDS-3UTR	ENST00000357750	ENST00000418948		TCGA	LD	THYM	TCGA-ZB-A96L-01A	HYAL2	chr3	50356387	-	SEMA3B	chr3	50306593	+
5CDS-3UTR	ENST00000395139	ENST00000418948		TCGA	LD	THYM	TCGA-ZB-A96L-01A	HYAL2	chr3	50356387	-	SEMA3B	chr3	50306593	+
5CDS-3UTR	ENST00000442581	ENST00000418948		TCGA	LD	THYM	TCGA-ZB-A96L-01A	HYAL2	chr3	50356387	-	SEMA3B	chr3	50306593	+
5CDS-5UTR	ENST00000338779	ENST00000531894		TCGA	LD	THYM	TCGA-ZB-A96L-01A	MTSS1L	chr16	70711695	-	PDXDC2P	chr16	70065871	-
5CDS-intron	ENST00000338779	ENST00000525173		TCGA	LD	THYM	TCGA-ZB-A96L-01A	MTSS1L	chr16	70711695	-	PDXDC2P	chr16	70065871	-
In-frame	ENST00000265563	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
In-frame	ENST00000265563	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000265563	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000265563	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000265563	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
In-frame	ENST00000454963	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
In-frame	ENST00000454963	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000454963	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000454963	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000454963	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
In-frame	ENST00000296446	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
In-frame	ENST00000296446	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000296446	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000296446	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
5CDS-intron	ENST00000296446	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PRKAR2A	chr3	48827977	-	USP4	chr3	49362196	-
Frame-shit	ENST00000356151	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000356151	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000356151	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000356151	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000356151	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000302779	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000302779	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000302779	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000302779	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000302779	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000383716	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000383716	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000383716	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000383716	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000383716	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000463280	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000463280	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000463280	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000463280	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000463280	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000383715	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000383715	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000383715	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000383715	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000383715	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000484288	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000484288	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000484288	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000484288	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000484288	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000479241	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
Frame-shit	ENST00000479241	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000479241	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000479241	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5CDS-intron	ENST00000479241	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5UTR-3CDS	ENST00000536660	ENST00000351842		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5UTR-3CDS	ENST00000536660	ENST00000265560		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5UTR-intron	ENST00000536660	ENST00000488520		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5UTR-intron	ENST00000536660	ENST00000416417		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5UTR-intron	ENST00000536660	ENST00000415188		TCGA	LD	THYM	TCGA-ZB-A96L-01A	PXK	chr3	58318817	+	USP4	chr3	49332031	-
5UTR-3CDS	ENST00000442092	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
5UTR-3CDS	ENST00000266022	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
5UTR-3CDS	ENST00000443081	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
5UTR-3CDS	ENST00000539992	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
3UTR-3CDS	ENST00000441115	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
5UTR-3CDS	ENST00000422955	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
intron-3CDS	ENST00000421682	ENST00000266037		TCGA	LD	THYM	TCGA-ZB-A96L-01A	RBM6	chr3	49977658	+	DOCK3	chr3	50879106	+
intron-3CDS	ENST00000402530	ENST00000431992		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
intron-3CDS	ENST00000402530	ENST00000373422		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
intron-3CDS	ENST00000402530	ENST00000257118		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
intron-3CDS	ENST00000402530	ENST00000419414		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
intron-5UTR	ENST00000402530	ENST00000373416		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
intron-5UTR	ENST00000402530	ENST00000485928		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
intron-5UTR	ENST00000402530	ENST00000373418		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000274979	ENST00000431992		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000274979	ENST00000373422		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000274979	ENST00000257118		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000274979	ENST00000419414		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
5CDS-5UTR	ENST00000274979	ENST00000373416		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
5CDS-5UTR	ENST00000274979	ENST00000485928		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
5CDS-5UTR	ENST00000274979	ENST00000373418		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000402430	ENST00000431992		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000402430	ENST00000373422		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000402430	ENST00000257118		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000402430	ENST00000419414		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
5CDS-5UTR	ENST00000402430	ENST00000373416		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
5CDS-5UTR	ENST00000402430	ENST00000485928		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
5CDS-5UTR	ENST00000402430	ENST00000373418		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ANO7	chr2	242157796	+	PHC2	chr1	33799893	-
Frame-shit	ENST00000551964	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000551964	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000339433	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000339433	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000359972	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000359972	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3CDS	ENST00000333991	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3UTR	ENST00000333991	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000357310	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000357310	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3CDS	ENST00000552268	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3UTR	ENST00000552268	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000550527	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000550527	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000547045	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000547045	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
Frame-shit	ENST00000549007	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
5CDS-3UTR	ENST00000549007	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3CDS	ENST00000547743	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3UTR	ENST00000547743	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3CDS	ENST00000547666	ENST00000393217		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
intron-3UTR	ENST00000547666	ENST00000528777		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	APAF1	chr12	99093347	+	LRRIQ1	chr12	85638567	+
In-frame	ENST00000258530	ENST00000378970		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5CDS-intron	ENST00000258530	ENST00000378963		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5CDS-intron	ENST00000258530	ENST00000453287		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
In-frame	ENST00000539978	ENST00000378970		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5CDS-intron	ENST00000539978	ENST00000378963		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5CDS-intron	ENST00000539978	ENST00000453287		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
intron-3CDS	ENST00000546731	ENST00000378970		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
intron-intron	ENST00000546731	ENST00000378963		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
intron-intron	ENST00000546731	ENST00000453287		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
In-frame	ENST00000551662	ENST00000378970		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5CDS-intron	ENST00000551662	ENST00000378963		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5CDS-intron	ENST00000551662	ENST00000453287		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5UTR-3CDS	ENST00000549573	ENST00000378970		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5UTR-intron	ENST00000549573	ENST00000378963		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
5UTR-intron	ENST00000549573	ENST00000453287		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	APPL2	chr12	105597481	-	NR0B1	chrX	30322940	-
Frame-shit	ENST00000378954	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000378954	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5CDS-intron	ENST00000378954	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000406122	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-intron	ENST00000406122	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000402054	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-intron	ENST00000402054	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-3CDS	ENST00000539122	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5UTR-intron	ENST00000539122	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000332337	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-intron	ENST00000332337	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
Frame-shit	ENST00000419554	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
5CDS-intron	ENST00000419554	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000452935	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-intron	ENST00000452935	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000546051	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-intron	ENST00000546051	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000425019		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000324219		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000350198		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000302217		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000413150		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000347699		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000456652		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-3CDS	ENST00000486927	ENST00000350878		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
intron-intron	ENST00000486927	ENST00000498066		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ATL2	chr2	38604285	-	MAP4K4	chr2	102483674	+
In-frame	ENST00000358791	ENST00000371621		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000358791	ENST00000541713		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
In-frame	ENST00000262591	ENST00000371621		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000262591	ENST00000541713		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
In-frame	ENST00000371608	ENST00000371621		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000371608	ENST00000541713		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
In-frame	ENST00000609336	ENST00000371621		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
5CDS-intron	ENST00000609336	ENST00000541713		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
3UTR-3CDS	ENST00000485049	ENST00000371621		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
3UTR-intron	ENST00000485049	ENST00000541713		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	BCAS4	chr20	49446917	+	PTPN1	chr20	49177900	+
intron-3CDS	ENST00000593699	ENST00000539909		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000593699	ENST00000286621		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000593699	ENST00000372734		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000593699	ENST00000541550		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-intron	ENST00000593699	ENST00000467840		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000372499	ENST00000539909		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000372499	ENST00000286621		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000372499	ENST00000372734		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000372499	ENST00000541550		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-intron	ENST00000372499	ENST00000467840		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000496424	ENST00000539909		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000496424	ENST00000286621		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000496424	ENST00000372734		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-3CDS	ENST00000496424	ENST00000541550		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
intron-intron	ENST00000496424	ENST00000467840		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	C10orf11	chr10	77198252	+	ADK	chr10	76153899	+
5UTR-3CDS	ENST00000403006	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5UTR-5UTR	ENST00000403006	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
Frame-shit	ENST00000381090	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5CDS-5UTR	ENST00000381090	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
Frame-shit	ENST00000237822	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5CDS-5UTR	ENST00000237822	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
intron-3CDS	ENST00000435420	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
intron-5UTR	ENST00000435420	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
Frame-shit	ENST00000440866	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5CDS-5UTR	ENST00000440866	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5UTR-3CDS	ENST00000541941	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5UTR-5UTR	ENST00000541941	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
Frame-shit	ENST00000419825	ENST00000305997		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
5CDS-5UTR	ENST00000419825	ENST00000486484		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	C2orf43	chr2	20990015	-	MBOAT2	chr2	9022695	-
intron-3CDS	ENST00000269881	ENST00000397104		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	CALR3	chr19	16738683	-	ZNF99	chr19	22952126	-
intron-3CDS	ENST00000269881	ENST00000596209		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	CALR3	chr19	16738683	-	ZNF99	chr19	22952126	-
intron-3CDS	ENST00000602234	ENST00000397104		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	CALR3	chr19	16738683	-	ZNF99	chr19	22952126	-
intron-3CDS	ENST00000602234	ENST00000596209		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	CALR3	chr19	16738683	-	ZNF99	chr19	22952126	-
3UTR-3CDS	ENST00000395290	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000395290	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-3CDS	ENST00000358597	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000358597	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-3CDS	ENST00000395292	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000395292	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-3CDS	ENST00000310513	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000310513	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-3CDS	ENST00000361904	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000361904	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
5UTR-3CDS	ENST00000539455	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
5UTR-5UTR	ENST00000539455	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-3CDS	ENST00000531165	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000531165	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-3CDS	ENST00000532048	ENST00000263773		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
3UTR-5UTR	ENST00000532048	ENST00000534003		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CELF1	chr11	47493743	-	FNBP4	chr11	47755681	-
5UTR-3CDS	ENST00000315251	ENST00000335754		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CHDH	chr3	53874956	-	ACTR8	chr3	53908391	-
5UTR-intron	ENST00000315251	ENST00000488802		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CHDH	chr3	53874956	-	ACTR8	chr3	53908391	-
5UTR-intron	ENST00000315251	ENST00000482349		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CHDH	chr3	53874956	-	ACTR8	chr3	53908391	-
5UTR-intron	ENST00000315251	ENST00000231909		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CHDH	chr3	53874956	-	ACTR8	chr3	53908391	-
Frame-shit	ENST00000409790	ENST00000287706		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	CLEC16A	chr16	11038654	+	NTAN1	chr16	15141777	-
Frame-shit	ENST00000409552	ENST00000287706		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	CLEC16A	chr16	11038654	+	NTAN1	chr16	15141777	-
intron-3CDS	ENST00000465491	ENST00000287706		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	CLEC16A	chr16	11038654	+	NTAN1	chr16	15141777	-
intron-3CDS	ENST00000381822	ENST00000287706		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	CLEC16A	chr16	11038654	+	NTAN1	chr16	15141777	-
5CDS-5UTR	ENST00000321949	ENST00000222249		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
5CDS-intron	ENST00000321949	ENST00000594192		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
5CDS-5UTR	ENST00000338797	ENST00000222249		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
5CDS-intron	ENST00000338797	ENST00000594192		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
intron-5UTR	ENST00000594658	ENST00000222249		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
intron-intron	ENST00000594658	ENST00000594192		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
intron-5UTR	ENST00000601916	ENST00000222249		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
intron-intron	ENST00000601916	ENST00000594192		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CRTC1	chr19	18794638	+	KCNN1	chr19	18084617	+
intron-3CDS	ENST00000527132	ENST00000253925		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
intron-3CDS	ENST00000527132	ENST00000389547		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
intron-intron	ENST00000527132	ENST00000530548		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000396505	ENST00000253925		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000396505	ENST00000389547		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
5CDS-intron	ENST00000396505	ENST00000530548		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000326932	ENST00000253925		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000326932	ENST00000389547		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
5CDS-intron	ENST00000326932	ENST00000530548		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000525493	ENST00000253925		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000525493	ENST00000389547		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
5CDS-intron	ENST00000525493	ENST00000530548		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000450094	ENST00000253925		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000450094	ENST00000389547		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
5CDS-intron	ENST00000450094	ENST00000530548		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	DKK3	chr11	12023847	-	PPFIA1	chr11	70194295	+
Frame-shit	ENST00000396842	ENST00000351008		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	EAF1	chr3	15469389	+	SPATA16	chr3	172634271	-
5UTR-3CDS	ENST00000432764	ENST00000351008		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	EAF1	chr3	15469389	+	SPATA16	chr3	172634271	-
Frame-shit	ENST00000394773	ENST00000398868		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000394773	ENST00000332645		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000394773	ENST00000538786		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
5CDS-intron	ENST00000394773	ENST00000535789		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000278845	ENST00000398868		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000278845	ENST00000332645		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000278845	ENST00000538786		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
5CDS-intron	ENST00000278845	ENST00000535789		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
In-frame	ENST00000531557	ENST00000398868		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
In-frame	ENST00000531557	ENST00000332645		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
In-frame	ENST00000531557	ENST00000538786		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
5CDS-intron	ENST00000531557	ENST00000535789		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000494176	ENST00000398868		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000494176	ENST00000332645		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000494176	ENST00000538786		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
5CDS-intron	ENST00000494176	ENST00000535789		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000529309	ENST00000398868		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000529309	ENST00000332645		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
Frame-shit	ENST00000529309	ENST00000538786		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
5CDS-intron	ENST00000529309	ENST00000535789		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
intron-3CDS	ENST00000438258	ENST00000398868		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
intron-3CDS	ENST00000438258	ENST00000332645		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
intron-3CDS	ENST00000438258	ENST00000538786		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
intron-intron	ENST00000438258	ENST00000535789		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	EML3	chr11	62371201	-	ATL3	chr11	63400569	-
In-frame	ENST00000389567	ENST00000481646		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000469044		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000491704		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000358441		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
Frame-shit	ENST00000389567	ENST00000489213		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000461822		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000485396		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000471453		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000470821		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000393058		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000389567	ENST00000538260		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000481646		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000469044		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000491704		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000358441		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
Frame-shit	ENST00000289135	ENST00000489213		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000461822		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000485396		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000471453		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000470821		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000393058		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
In-frame	ENST00000289135	ENST00000538260		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000481646		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000469044		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000491704		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000358441		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000489213		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000461822		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000485396		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000471453		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000470821		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000393058		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
intron-3CDS	ENST00000460133	ENST00000538260		TCGA	RV	UCEC	TCGA-PG-A914-01A	ESYT3	chr3	138153967	+	ARMC8	chr3	137963930	+
5UTR-3CDS	ENST00000064778	ENST00000334126		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000064778	ENST00000313663		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000064778	ENST00000542452		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000064778	ENST00000539061		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-3CDS	ENST00000450446	ENST00000334126		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000450446	ENST00000313663		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000450446	ENST00000542452		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000450446	ENST00000539061		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-3CDS	ENST00000356467	ENST00000334126		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000356467	ENST00000313663		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-5UTR	ENST00000356467	ENST00000542452		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5UTR-intron	ENST00000356467	ENST00000539061		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	FAM168A	chr11	73308968	-	C2CD3	chr11	73724570	-
5CDS-5UTR	ENST00000311172	ENST00000064778		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000311172	ENST00000450446		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000311172	ENST00000356467		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409314	ENST00000064778		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409314	ENST00000450446		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409314	ENST00000356467		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409418	ENST00000064778		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409418	ENST00000450446		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409418	ENST00000356467		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000458644	ENST00000064778		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000458644	ENST00000450446		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000458644	ENST00000356467		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000409853	ENST00000064778		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000409853	ENST00000450446		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000409853	ENST00000356467		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409263	ENST00000064778		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409263	ENST00000450446		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
5CDS-5UTR	ENST00000409263	ENST00000356467		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	FCHSD2	chr11	72551922	-	FAM168A	chr11	73179537	-
In-frame	ENST00000369061	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369061	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369061	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369061	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369061	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369061	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369061	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000357555	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000357555	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000357555	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000357555	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000357555	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000357555	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000357555	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000358487	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000358487	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000358487	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000358487	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000358487	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000358487	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000358487	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000356226	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000356226	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000356226	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000356226	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000356226	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000356226	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000356226	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000369060	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369060	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369060	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369060	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369060	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369060	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369060	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000369059	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369059	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369059	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369059	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369059	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369059	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369059	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
In-frame	ENST00000346997	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000346997	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000346997	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000346997	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000346997	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000346997	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000346997	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000457416	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000457416	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000457416	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000457416	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000457416	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000457416	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000457416	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000351936	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000351936	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000351936	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000351936	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000351936	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000351936	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000351936	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000360144	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000360144	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000360144	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000360144	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000360144	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000360144	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000360144	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
In-frame	ENST00000369056	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369056	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369056	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369056	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369056	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000369056	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000369056	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-3CDS	ENST00000490349	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-5UTR	ENST00000490349	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-5UTR	ENST00000490349	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-intron	ENST00000490349	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-intron	ENST00000490349	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-5UTR	ENST00000490349	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5UTR-intron	ENST00000490349	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000359354	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000359354	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000359354	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000359354	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000359354	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-5UTR	ENST00000359354	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
5CDS-intron	ENST00000359354	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-3CDS	ENST00000478859	ENST00000369043		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-5UTR	ENST00000478859	ENST00000535655		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-5UTR	ENST00000478859	ENST00000224652		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-intron	ENST00000478859	ENST00000369040		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-intron	ENST00000478859	ENST00000540606		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-5UTR	ENST00000478859	ENST00000543447		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
intron-intron	ENST00000478859	ENST00000481784		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	FGFR2	chr10	123298106	-	ATE1	chr10	123683844	-
Frame-shit	ENST00000335255	ENST00000337014		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	FOXK2	chr17	80521424	+	HEXDC	chr17	80382270	+
Frame-shit	ENST00000335255	ENST00000577944		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	FOXK2	chr17	80521424	+	HEXDC	chr17	80382270	+
Frame-shit	ENST00000335255	ENST00000327949		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	FOXK2	chr17	80521424	+	HEXDC	chr17	80382270	+
intron-3CDS	ENST00000529652	ENST00000337014		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	FOXK2	chr17	80521424	+	HEXDC	chr17	80382270	+
intron-3CDS	ENST00000529652	ENST00000577944		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	FOXK2	chr17	80521424	+	HEXDC	chr17	80382270	+
intron-3CDS	ENST00000529652	ENST00000327949		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	FOXK2	chr17	80521424	+	HEXDC	chr17	80382270	+
5CDS-intron	ENST00000251808	ENST00000537875		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5CDS-intron	ENST00000251808	ENST00000309791		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5CDS-intron	ENST00000251808	ENST00000297848		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5CDS-intron	ENST00000251808	ENST00000247781		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5CDS-intron	ENST00000251808	ENST00000432943		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5UTR-intron	ENST00000395927	ENST00000537875		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5UTR-intron	ENST00000395927	ENST00000309791		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5UTR-intron	ENST00000395927	ENST00000297848		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5UTR-intron	ENST00000395927	ENST00000247781		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
5UTR-intron	ENST00000395927	ENST00000432943		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
intron-intron	ENST00000517674	ENST00000537875		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
intron-intron	ENST00000517674	ENST00000309791		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
intron-intron	ENST00000517674	ENST00000297848		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
intron-intron	ENST00000517674	ENST00000247781		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
intron-intron	ENST00000517674	ENST00000432943		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	GRHL2	chr8	102505017	+	COL14A1	chr8	121312971	+
intron-3UTR	ENST00000495072	ENST00000487175		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000495072	ENST00000372585		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000495072	ENST00000372589		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000495072	ENST00000372574		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000396478	ENST00000487175		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000396478	ENST00000372585		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000396478	ENST00000372589		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
intron-3UTR	ENST00000396478	ENST00000372574		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	IPP	chr1	46165742	-	SLC22A7	chr6	43266358	+
5UTR-intron	ENST00000342745	ENST00000555245		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
5UTR-intron	ENST00000342745	ENST00000556605		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
5UTR-intron	ENST00000342745	ENST00000336643		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
5UTR-3UTR	ENST00000342745	ENST00000031146		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
5UTR-intron	ENST00000342745	ENST00000557046		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
3UTR-intron	ENST00000553497	ENST00000555245		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
3UTR-intron	ENST00000553497	ENST00000556605		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
3UTR-intron	ENST00000553497	ENST00000336643		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
3UTR-3UTR	ENST00000553497	ENST00000031146		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
3UTR-intron	ENST00000553497	ENST00000557046		TCGA	RV	UCEC	TCGA-B5-A1MW-01A	KIAA0247	chr14	70078545	+	SLC39A9	chr14	69928414	+
Frame-shit	ENST00000440693	ENST00000240488		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
5CDS-3UTR	ENST00000440693	ENST00000503967		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
5CDS-3UTR	ENST00000440693	ENST00000504860		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
Frame-shit	ENST00000409663	ENST00000240488		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
5CDS-3UTR	ENST00000409663	ENST00000503967		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
5CDS-3UTR	ENST00000409663	ENST00000504860		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
Frame-shit	ENST00000409959	ENST00000240488		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
5CDS-3UTR	ENST00000409959	ENST00000503967		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
5CDS-3UTR	ENST00000409959	ENST00000504860		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	KIAA0922	chr4	154395040	+	MND1	chr4	154271216	+
Frame-shit	ENST00000261699	ENST00000013125		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5CDS-intron	ENST00000261699	ENST00000557578		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
Frame-shit	ENST00000267436	ENST00000013125		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5CDS-intron	ENST00000267436	ENST00000557578		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
Frame-shit	ENST00000421284	ENST00000013125		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5CDS-intron	ENST00000421284	ENST00000557578		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
Frame-shit	ENST00000555423	ENST00000013125		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5CDS-intron	ENST00000555423	ENST00000557578		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
Frame-shit	ENST00000555610	ENST00000013125		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5CDS-intron	ENST00000555610	ENST00000557578		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5UTR-3CDS	ENST00000556393	ENST00000013125		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
5UTR-intron	ENST00000556393	ENST00000557578		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	L2HGDH	chr14	50778729	-	MAP4K5	chr14	50915550	-
intron-intron	ENST00000552491	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552491	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552491	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552491	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552491	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552491	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000547825	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000547825	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000547825	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000547825	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000547825	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000547825	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552823	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552823	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552823	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552823	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552823	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552823	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000394943	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000394943	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000394943	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000394943	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000394943	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000394943	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000341247	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000341247	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000341247	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000341247	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000341247	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
5CDS-intron	ENST00000341247	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552783	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552783	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552783	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552783	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552783	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552783	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552909	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552909	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552909	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552909	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552909	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552909	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552008	ENST00000426898		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552008	ENST00000425752		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552008	ENST00000423947		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552008	ENST00000435642		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552008	ENST00000320560		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-intron	ENST00000552008	ENST00000441606		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	LIMA1	chr12	50642416	-	ANO6	chr12	45695797	+
intron-3CDS	ENST00000368301	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000368301	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000361308	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000361308	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
3UTR-3CDS	ENST00000347559	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
3UTR-3CDS	ENST00000347559	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
3UTR-3CDS	ENST00000368300	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
3UTR-3CDS	ENST00000368300	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
In-frame	ENST00000368299	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
In-frame	ENST00000368299	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000448611	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000448611	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000368297	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000368297	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000473598	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000473598	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000392353	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000392353	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000496738	ENST00000233809		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-3CDS	ENST00000496738	ENST00000456764		TCGA	RV	UCEC	TCGA-EO-A3AY-01A	LMNA	chr1	156109108	+	IGFBP2	chr2	217525456	+
intron-5UTR	ENST00000261596	ENST00000315677		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-5UTR	ENST00000261596	ENST00000581527		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000400147		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000400149		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000400155		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000400150		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000584874		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000534970		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000539435		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000581699		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000400145		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-5UTR	ENST00000261596	ENST00000515196		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000261596	ENST00000478161		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-5UTR	ENST00000581568	ENST00000315677		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-5UTR	ENST00000581568	ENST00000581527		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000400147		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000400149		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000400155		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000400150		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000584874		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000534970		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000539435		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000581699		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000400145		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-5UTR	ENST00000581568	ENST00000515196		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
intron-intron	ENST00000581568	ENST00000478161		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	LPIN2	chr18	3013085	-	DLGAP1	chr18	3880140	-
In-frame	ENST00000404816	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000354476	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000390003	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000418533	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000402934	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000404525	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000407925	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
In-frame	ENST00000272273	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
intron-3CDS	ENST00000498013	ENST00000317907		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	LTBP1	chr2	33540336	+	TTC27	chr2	32855590	+
Frame-shit	ENST00000505658	ENST00000541920		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000505658	ENST00000300441		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000505658	ENST00000504392		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000505658	ENST00000427954		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000505658	ENST00000502667		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5CDS-3UTR	ENST00000505658	ENST00000506085		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000393227	ENST00000541920		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000393227	ENST00000300441		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000393227	ENST00000504392		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000393227	ENST00000427954		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000393227	ENST00000502667		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5CDS-3UTR	ENST00000393227	ENST00000506085		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000311571	ENST00000541920		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000311571	ENST00000300441		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000311571	ENST00000504392		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000311571	ENST00000427954		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000311571	ENST00000502667		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5CDS-3UTR	ENST00000311571	ENST00000506085		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000240304	ENST00000541920		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000240304	ENST00000300441		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000240304	ENST00000504392		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000240304	ENST00000427954		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
In-frame	ENST00000240304	ENST00000502667		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5CDS-3UTR	ENST00000240304	ENST00000506085		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5UTR-3CDS	ENST00000544170	ENST00000541920		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5UTR-3CDS	ENST00000544170	ENST00000300441		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5UTR-3CDS	ENST00000544170	ENST00000504392		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5UTR-3CDS	ENST00000544170	ENST00000427954		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5UTR-3CDS	ENST00000544170	ENST00000502667		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
5UTR-3UTR	ENST00000544170	ENST00000506085		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
intron-3CDS	ENST00000503798	ENST00000541920		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
intron-3CDS	ENST00000503798	ENST00000300441		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
intron-3CDS	ENST00000503798	ENST00000504392		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
intron-3CDS	ENST00000503798	ENST00000427954		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
intron-3CDS	ENST00000503798	ENST00000502667		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
intron-3UTR	ENST00000503798	ENST00000506085		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	LUC7L3	chr17	48797192	+	ACSF2	chr17	48551863	+
Frame-shit	ENST00000217246	ENST00000228027		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5CDS-intron	ENST00000217246	ENST00000376262		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5CDS-intron	ENST00000217246	ENST00000605608		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
Frame-shit	ENST00000310348	ENST00000228027		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5CDS-intron	ENST00000310348	ENST00000376262		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5CDS-intron	ENST00000310348	ENST00000605608		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-3CDS	ENST00000464883	ENST00000228027		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-intron	ENST00000464883	ENST00000376262		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-intron	ENST00000464883	ENST00000605608		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5UTR-3CDS	ENST00000402914	ENST00000228027		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5UTR-intron	ENST00000402914	ENST00000376262		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
5UTR-intron	ENST00000402914	ENST00000605608		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-3CDS	ENST00000378058	ENST00000228027		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-intron	ENST00000378058	ENST00000376262		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-intron	ENST00000378058	ENST00000605608		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-3CDS	ENST00000407045	ENST00000228027		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-intron	ENST00000407045	ENST00000376262		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
intron-intron	ENST00000407045	ENST00000605608		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	MACROD2	chr20	15210707	+	DGAT2	chr11	75495663	+
Frame-shit	ENST00000383737	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000395734	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000426837	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000360240	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000439356	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000264724	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000420772	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000441748	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000462206	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000434267	ENST00000434006		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000372009	ENST00000401061		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	MAST2	chr1	46425149	+	MMACHC	chr1	45973028	+
5CDS-intron	ENST00000372009	ENST00000477188		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	MAST2	chr1	46425149	+	MMACHC	chr1	45973028	+
Frame-shit	ENST00000361297	ENST00000401061		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	MAST2	chr1	46425149	+	MMACHC	chr1	45973028	+
5CDS-intron	ENST00000361297	ENST00000477188		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	MAST2	chr1	46425149	+	MMACHC	chr1	45973028	+
intron-3CDS	ENST00000477968	ENST00000401061		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	MAST2	chr1	46425149	+	MMACHC	chr1	45973028	+
intron-intron	ENST00000477968	ENST00000477188		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	MAST2	chr1	46425149	+	MMACHC	chr1	45973028	+
5UTR-5UTR	ENST00000349945	ENST00000320201		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000349945	ENST00000392428		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000349945	ENST00000280562		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-intron	ENST00000349945	ENST00000542749		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000349945	ENST00000546049		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000349945	ENST00000451868		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000432919	ENST00000320201		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000432919	ENST00000392428		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000432919	ENST00000280562		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-intron	ENST00000432919	ENST00000542749		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000432919	ENST00000546049		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000432919	ENST00000451868		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000354436	ENST00000320201		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000354436	ENST00000392428		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000354436	ENST00000280562		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-intron	ENST00000354436	ENST00000542749		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000354436	ENST00000546049		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000354436	ENST00000451868		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000567239	ENST00000320201		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000567239	ENST00000392428		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000567239	ENST00000280562		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-intron	ENST00000567239	ENST00000542749		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000567239	ENST00000546049		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5CDS-5UTR	ENST00000567239	ENST00000451868		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000393742	ENST00000320201		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000393742	ENST00000392428		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000393742	ENST00000280562		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-intron	ENST00000393742	ENST00000542749		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000393742	ENST00000546049		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000393742	ENST00000451868		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000566899	ENST00000320201		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000566899	ENST00000392428		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000566899	ENST00000280562		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-intron	ENST00000566899	ENST00000542749		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000566899	ENST00000546049		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
5UTR-5UTR	ENST00000566899	ENST00000451868		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NFAT5	chr16	69600277	+	PITPNM2	chr12	123519232	-
Frame-shit	ENST00000269228	ENST00000592179		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
Frame-shit	ENST00000269228	ENST00000322980		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5CDS-intron	ENST00000269228	ENST00000585908		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5CDS-intron	ENST00000269228	ENST00000284207		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5CDS-intron	ENST00000269228	ENST00000586511		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000412552	ENST00000592179		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
intron-3CDS	ENST00000412552	ENST00000322980		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000412552	ENST00000585908		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000412552	ENST00000284207		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
intron-intron	ENST00000412552	ENST00000586511		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5UTR-3CDS	ENST00000540608	ENST00000592179		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5UTR-3CDS	ENST00000540608	ENST00000322980		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5UTR-intron	ENST00000540608	ENST00000585908		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5UTR-intron	ENST00000540608	ENST00000284207		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5UTR-intron	ENST00000540608	ENST00000586511		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NPC1	chr18	21131591	-	ANKRD29	chr18	21214113	-
5CDS-5UTR	ENST00000269228	ENST00000319481		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000269228	ENST00000399443		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000269228	ENST00000357041		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000269228	ENST00000399441		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000269228	ENST00000582618		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000412552	ENST00000319481		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000412552	ENST00000399443		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-intron	ENST00000412552	ENST00000357041		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000412552	ENST00000399441		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5CDS-5UTR	ENST00000412552	ENST00000582618		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
intron-5UTR	ENST00000540608	ENST00000319481		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
intron-intron	ENST00000540608	ENST00000399443		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
intron-intron	ENST00000540608	ENST00000357041		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
intron-5UTR	ENST00000540608	ENST00000399441		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
intron-5UTR	ENST00000540608	ENST00000582618		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	NPC1	chr18	21113319	-	OSBPL1A	chr18	21957499	-
5UTR-3CDS	ENST00000337959	ENST00000290429		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
5UTR-3CDS	ENST00000337959	ENST00000327555		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
5UTR-5UTR	ENST00000337959	ENST00000464244		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
5UTR-3CDS	ENST00000263246	ENST00000290429		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
5UTR-3CDS	ENST00000263246	ENST00000327555		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
5UTR-5UTR	ENST00000263246	ENST00000464244		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000407585	ENST00000290429		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000407585	ENST00000327555		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-5UTR	ENST00000407585	ENST00000464244		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000403744	ENST00000290429		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000403744	ENST00000327555		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-5UTR	ENST00000403744	ENST00000464244		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000402229	ENST00000290429		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-3CDS	ENST00000402229	ENST00000327555		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
intron-5UTR	ENST00000402229	ENST00000464244		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	PACSIN2	chr22	43411027	-	MCAT	chr22	43537255	-
In-frame	ENST00000232375	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000232375	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000232375	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000232375	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000536104	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000536104	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000536104	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000536104	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000416568	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000416568	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000416568	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000416568	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000541519	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000541519	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000541519	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000541519	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000383734	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000383734	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
In-frame	ENST00000383734	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000383734	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5UTR-3CDS	ENST00000490115	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5UTR-3CDS	ENST00000490115	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5UTR-3CDS	ENST00000490115	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5UTR-intron	ENST00000490115	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000545984	ENST00000540274		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000545984	ENST00000377307		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
Frame-shit	ENST00000545984	ENST00000276826		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-intron	ENST00000545984	ENST00000528810		TCGA	RV	UCEC	TCGA-PG-A914-01A	PFKFB4	chr3	48587297	-	ARHGAP39	chr8	145781027	-
5CDS-5UTR	ENST00000202556	ENST00000336517		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
5CDS-5UTR	ENST00000202556	ENST00000394857		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
5CDS-intron	ENST00000202556	ENST00000416245		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
5CDS-intron	ENST00000202556	ENST00000467555		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-5UTR	ENST00000423488	ENST00000336517		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-5UTR	ENST00000423488	ENST00000394857		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-intron	ENST00000423488	ENST00000416245		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-intron	ENST00000423488	ENST00000467555		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-5UTR	ENST00000555391	ENST00000336517		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-5UTR	ENST00000555391	ENST00000394857		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-intron	ENST00000555391	ENST00000416245		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-intron	ENST00000555391	ENST00000467555		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	PPP1R13B	chr14	104313636	-	ZP3	chr7	76054369	+
intron-3CDS	ENST00000389413	ENST00000543378		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
intron-3CDS	ENST00000389413	ENST00000327564		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
intron-intron	ENST00000389413	ENST00000394713		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
intron-intron	ENST00000389413	ENST00000584368		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
intron-intron	ENST00000389413	ENST00000341671		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
intron-intron	ENST00000389413	ENST00000581786		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000409483	ENST00000543378		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000409483	ENST00000327564		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000409483	ENST00000394713		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000409483	ENST00000584368		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000409483	ENST00000341671		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000409483	ENST00000581786		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000389416	ENST00000543378		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000389416	ENST00000327564		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389416	ENST00000394713		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389416	ENST00000584368		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389416	ENST00000341671		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389416	ENST00000581786		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000389418	ENST00000543378		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000389418	ENST00000327564		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389418	ENST00000394713		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389418	ENST00000584368		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389418	ENST00000341671		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000389418	ENST00000581786		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000404321	ENST00000543378		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
In-frame	ENST00000404321	ENST00000327564		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000404321	ENST00000394713		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000404321	ENST00000584368		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000404321	ENST00000341671		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
5CDS-intron	ENST00000404321	ENST00000581786		TCGA	RV	UCEC	TCGA-BK-A139-02A	PTPRN2	chr7	157903521	-	LRRC37B	chr17	30357675	+
Frame-shit	ENST00000358951	ENST00000315677		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000581527		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000400147		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000400149		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000400155		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000400150		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000584874		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000534970		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000539435		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000581699		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000400145		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
Frame-shit	ENST00000358951	ENST00000515196		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5CDS-5UTR	ENST00000358951	ENST00000478161		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000315677		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000581527		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000400147		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000400149		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000400155		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000400150		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000584874		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000534970		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000539435		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000581699		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000400145		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-3CDS	ENST00000462353	ENST00000515196		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
5UTR-5UTR	ENST00000462353	ENST00000478161		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	RAB3GAP2	chr1	220445565	-	DLGAP1	chr18	3742512	-
intron-3CDS	ENST00000361757	ENST00000423994		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000429770		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000435965		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000266039		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000395083		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000360963		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000424201		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000361757	ENST00000479441		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-5UTR	ENST00000361757	ENST00000487413		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000423994		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000429770		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000435965		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000266039		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000395083		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000360963		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000424201		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-3CDS	ENST00000587024	ENST00000479441		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
intron-5UTR	ENST00000587024	ENST00000487413		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000423994		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000429770		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000435965		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000266039		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000395083		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000360963		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000424201		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
In-frame	ENST00000438103	ENST00000479441		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
5CDS-5UTR	ENST00000438103	ENST00000487413		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SBNO2	chr19	1132089	-	CACNA2D2	chr3	50471860	-
5CDS-3UTR	ENST00000449833	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000409161	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000423696	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000338508	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000409530	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000449116	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
5CDS-3UTR	ENST00000357171	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
intron-3UTR	ENST00000468619	ENST00000281030		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SHANK2	chr11	70505933	-	THRSP	chr11	77778705	+
intron-3CDS	ENST00000394817	ENST00000355078		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-3CDS	ENST00000394817	ENST00000302763		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-3CDS	ENST00000394817	ENST00000518825		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-intron	ENST00000394817	ENST00000520400		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-intron	ENST00000394817	ENST00000540387		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-3CDS	ENST00000265195	ENST00000355078		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-3CDS	ENST00000265195	ENST00000302763		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-3CDS	ENST00000265195	ENST00000518825		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-intron	ENST00000265195	ENST00000520400		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-intron	ENST00000265195	ENST00000540387		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-3CDS	ENST00000509534	ENST00000355078		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-3CDS	ENST00000509534	ENST00000302763		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-3CDS	ENST00000509534	ENST00000518825		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-intron	ENST00000509534	ENST00000520400		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-intron	ENST00000509534	ENST00000540387		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-3CDS	ENST00000515008	ENST00000355078		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-3CDS	ENST00000515008	ENST00000302763		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-3CDS	ENST00000515008	ENST00000518825		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-intron	ENST00000515008	ENST00000520400		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
intron-intron	ENST00000515008	ENST00000540387		TCGA	RV	UCEC	TCGA-FI-A2EY-01A	SIL1	chr5	138532130	-	CTNNA1	chr5	138264935	+
5UTR-intron	ENST00000222345	ENST00000521788		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	SIPA1L3	chr19	38397998	+	COLEC10	chr8	120118039	+
5UTR-intron	ENST00000222345	ENST00000332843		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	SIPA1L3	chr19	38397998	+	COLEC10	chr8	120118039	+
intron-intron	ENST00000476317	ENST00000521788		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	SIPA1L3	chr19	38397998	+	COLEC10	chr8	120118039	+
intron-intron	ENST00000476317	ENST00000332843		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	SIPA1L3	chr19	38397998	+	COLEC10	chr8	120118039	+
5CDS-5UTR	ENST00000336915	ENST00000484302		TCGA	RV	UCEC	TCGA-BK-A139-02A	SKAP1	chr17	46507437	-	HOXB6	chr17	46675590	-
5CDS-5UTR	ENST00000336915	ENST00000225648		TCGA	RV	UCEC	TCGA-BK-A139-02A	SKAP1	chr17	46507437	-	HOXB6	chr17	46675590	-
5CDS-5UTR	ENST00000336915	ENST00000490419		TCGA	RV	UCEC	TCGA-BK-A139-02A	SKAP1	chr17	46507437	-	HOXB6	chr17	46675590	-
5CDS-5UTR	ENST00000584924	ENST00000484302		TCGA	RV	UCEC	TCGA-BK-A139-02A	SKAP1	chr17	46507437	-	HOXB6	chr17	46675590	-
5CDS-5UTR	ENST00000584924	ENST00000225648		TCGA	RV	UCEC	TCGA-BK-A139-02A	SKAP1	chr17	46507437	-	HOXB6	chr17	46675590	-
5CDS-5UTR	ENST00000584924	ENST00000490419		TCGA	RV	UCEC	TCGA-BK-A139-02A	SKAP1	chr17	46507437	-	HOXB6	chr17	46675590	-
intron-3CDS	ENST00000393469	ENST00000360370		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000393469	ENST00000346785		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000393469	ENST00000383598		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000393469	ENST00000315891		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000393469	ENST00000508835		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-5UTR	ENST00000393469	ENST00000514023		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000423114	ENST00000360370		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000423114	ENST00000346785		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000423114	ENST00000383598		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000423114	ENST00000315891		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000423114	ENST00000508835		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000423114	ENST00000514023		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000469902	ENST00000360370		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000469902	ENST00000346785		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000469902	ENST00000383598		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000469902	ENST00000315891		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000469902	ENST00000508835		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-5UTR	ENST00000469902	ENST00000514023		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000314584	ENST00000360370		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000314584	ENST00000346785		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000314584	ENST00000383598		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000314584	ENST00000315891		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000314584	ENST00000508835		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-5UTR	ENST00000314584	ENST00000514023		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000430155	ENST00000360370		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000430155	ENST00000346785		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000430155	ENST00000383598		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000430155	ENST00000315891		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000430155	ENST00000508835		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-5UTR	ENST00000430155	ENST00000514023		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000465475	ENST00000360370		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000465475	ENST00000346785		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000465475	ENST00000383598		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000465475	ENST00000315891		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-3CDS	ENST00000465475	ENST00000508835		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
intron-5UTR	ENST00000465475	ENST00000514023		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SLC12A8	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000373068	ENST00000418390		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
In-frame	ENST00000373068	ENST00000609199		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
5CDS-3UTR	ENST00000373068	ENST00000487554		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
In-frame	ENST00000373069	ENST00000418390		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
In-frame	ENST00000373069	ENST00000609199		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
5CDS-3UTR	ENST00000373069	ENST00000487554		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000432073	ENST00000418390		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000432073	ENST00000609199		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3UTR	ENST00000432073	ENST00000487554		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000373066	ENST00000418390		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000373066	ENST00000609199		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3UTR	ENST00000373066	ENST00000487554		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000373064	ENST00000418390		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000373064	ENST00000609199		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3UTR	ENST00000373064	ENST00000487554		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000433501	ENST00000418390		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3CDS	ENST00000433501	ENST00000609199		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
intron-3UTR	ENST00000433501	ENST00000487554		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SLC25A25	chr9	130830859	+	TCEB3	chr1	24075511	+
5UTR-5UTR	ENST00000262160	ENST00000400473		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
5UTR-5UTR	ENST00000262160	ENST00000256925		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
5UTR-3UTR	ENST00000262160	ENST00000585061		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
5UTR-3UTR	ENST00000262160	ENST00000420687		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000402690	ENST00000400473		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000402690	ENST00000256925		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000402690	ENST00000585061		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000402690	ENST00000420687		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000356825	ENST00000400473		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000356825	ENST00000256925		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000356825	ENST00000585061		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000356825	ENST00000420687		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000586040	ENST00000400473		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000586040	ENST00000256925		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000586040	ENST00000585061		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000586040	ENST00000420687		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000591214	ENST00000400473		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000591214	ENST00000256925		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000591214	ENST00000585061		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000591214	ENST00000420687		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000587353	ENST00000400473		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-5UTR	ENST00000587353	ENST00000256925		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000587353	ENST00000585061		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
intron-3UTR	ENST00000587353	ENST00000420687		TCGA	RV	UCEC	TCGA-B5-A3FC-01A	SMAD2	chr18	45456732	-	CABLES1	chr18	20768802	+
In-frame	ENST00000263694	ENST00000373703		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
5CDS-5UTR	ENST00000263694	ENST00000492061		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
5CDS-5UTR	ENST00000263694	ENST00000440872		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
intron-3CDS	ENST00000489853	ENST00000373703		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
intron-5UTR	ENST00000489853	ENST00000492061		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
intron-5UTR	ENST00000489853	ENST00000440872		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
intron-3CDS	ENST00000373720	ENST00000373703		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
intron-5UTR	ENST00000373720	ENST00000492061		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
intron-5UTR	ENST00000373720	ENST00000440872		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
Frame-shit	ENST00000446633	ENST00000373703		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
5CDS-5UTR	ENST00000446633	ENST00000492061		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
5CDS-5UTR	ENST00000446633	ENST00000440872		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SNRNP40	chr1	31762101	-	PEF1	chr1	32101123	-
In-frame	ENST00000566228	ENST00000409790		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
In-frame	ENST00000566228	ENST00000409552		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000566228	ENST00000465491		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000566228	ENST00000381822		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
In-frame	ENST00000323433	ENST00000409790		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
In-frame	ENST00000323433	ENST00000409552		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000323433	ENST00000465491		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000323433	ENST00000381822		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
In-frame	ENST00000306030	ENST00000409790		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
In-frame	ENST00000306030	ENST00000409552		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000306030	ENST00000465491		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
5CDS-intron	ENST00000306030	ENST00000381822		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
intron-3CDS	ENST00000568359	ENST00000409790		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
intron-3CDS	ENST00000568359	ENST00000409552		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
intron-intron	ENST00000568359	ENST00000465491		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
intron-intron	ENST00000568359	ENST00000381822		TCGA	RV	UCEC	TCGA-A5-A7WJ-01A	SNX29	chr16	12172772	+	CLEC16A	chr16	11114050	+
Frame-shit	ENST00000392185	ENST00000414563		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SNX9	chr6	158353304	+	ZDHHC14	chr6	157963617	+
Frame-shit	ENST00000392185	ENST00000359775		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SNX9	chr6	158353304	+	ZDHHC14	chr6	157963617	+
5CDS-intron	ENST00000392185	ENST00000341375		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SNX9	chr6	158353304	+	ZDHHC14	chr6	157963617	+
5UTR-3CDS	ENST00000397942	ENST00000381971		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	SOCS6	chr18	67956326	+	GLIS3	chr9	3932470	-
5UTR-3CDS	ENST00000397942	ENST00000324333		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	SOCS6	chr18	67956326	+	GLIS3	chr9	3932470	-
5UTR-5UTR	ENST00000397942	ENST00000461870		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	SOCS6	chr18	67956326	+	GLIS3	chr9	3932470	-
intron-3CDS	ENST00000582322	ENST00000381971		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	SOCS6	chr18	67956326	+	GLIS3	chr9	3932470	-
intron-3CDS	ENST00000582322	ENST00000324333		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	SOCS6	chr18	67956326	+	GLIS3	chr9	3932470	-
intron-5UTR	ENST00000582322	ENST00000461870		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	SOCS6	chr18	67956326	+	GLIS3	chr9	3932470	-
In-frame	ENST00000426016	ENST00000395035		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
In-frame	ENST00000426016	ENST00000378803		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000402219	ENST00000395035		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000402219	ENST00000378803		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000395038	ENST00000395035		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
Frame-shit	ENST00000395038	ENST00000378803		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000428721	ENST00000395035		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000428721	ENST00000378803		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000472480	ENST00000395035		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
intron-3CDS	ENST00000472480	ENST00000378803		TCGA	RV	UCEC	TCGA-PG-A915-01A	SOS1	chr2	39347477	-	CDKL4	chr2	39417643	-
In-frame	ENST00000546136	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000546136	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000546136	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000546136	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000546136	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
Frame-shit	ENST00000381381	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000381381	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000381381	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000381381	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000381381	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
Frame-shit	ENST00000309359	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000309359	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000309359	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000309359	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000309359	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
In-frame	ENST00000451604	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000451604	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000451604	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000451604	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000451604	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
In-frame	ENST00000537393	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000537393	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000537393	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000537393	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000537393	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
In-frame	ENST00000541536	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000541536	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000541536	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000541536	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000541536	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000396007	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000396007	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000396007	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000396007	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000396007	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
In-frame	ENST00000545921	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000545921	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000545921	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000545921	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-intron	ENST00000545921	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000541847	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000541847	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000541847	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000541847	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000541847	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000441133	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000441133	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000441133	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000441133	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000441133	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-3CDS	ENST00000536850	ENST00000282881		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000536850	ENST00000539744		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-5UTR	ENST00000536850	ENST00000458174		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000536850	ENST00000445693		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
intron-intron	ENST00000536850	ENST00000413632		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SOX5	chr12	23793746	-	IFLTD1	chr12	25702480	-
5CDS-5UTR	ENST00000264659	ENST00000360797		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000264659	ENST00000580830		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000264659	ENST00000581345		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000264659	ENST00000579882		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000264659	ENST00000585100		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-intron	ENST00000264659	ENST00000578109		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000578925	ENST00000360797		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000578925	ENST00000580830		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000578925	ENST00000581345		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000578925	ENST00000579882		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-5UTR	ENST00000578925	ENST00000585100		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5CDS-intron	ENST00000578925	ENST00000578109		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5UTR-5UTR	ENST00000398579	ENST00000360797		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5UTR-5UTR	ENST00000398579	ENST00000580830		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5UTR-5UTR	ENST00000398579	ENST00000581345		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5UTR-5UTR	ENST00000398579	ENST00000579882		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5UTR-5UTR	ENST00000398579	ENST00000585100		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
5UTR-intron	ENST00000398579	ENST00000578109		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	SRCIN1	chr17	36707391	-	PCGF2	chr17	36896695	-
Frame-shit	ENST00000383836	ENST00000287585		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SRGAP3	chr3	9054992	-	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000383836	ENST00000495730		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SRGAP3	chr3	9054992	-	LHFPL4	chr3	9547887	-
Frame-shit	ENST00000360413	ENST00000287585		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SRGAP3	chr3	9054992	-	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000360413	ENST00000495730		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SRGAP3	chr3	9054992	-	LHFPL4	chr3	9547887	-
intron-3CDS	ENST00000433332	ENST00000287585		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SRGAP3	chr3	9054992	-	LHFPL4	chr3	9547887	-
intron-intron	ENST00000433332	ENST00000495730		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SRGAP3	chr3	9054992	-	LHFPL4	chr3	9547887	-
Frame-shit	ENST00000307877	ENST00000607838		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000591724		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000332065		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000589210		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000335146		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000467929		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000405575		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000411744		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000307877	ENST00000406660		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-3CDS	ENST00000539137	ENST00000607838		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000591724		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000332065		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000589210		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000335146		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000467929		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000405575		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000411744		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000539137	ENST00000406660		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
In-frame	ENST00000355113	ENST00000607838		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000591724		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000332065		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000589210		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000335146		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000467929		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000405575		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000411744		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
5CDS-intron	ENST00000355113	ENST00000406660		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-3CDS	ENST00000602720	ENST00000607838		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000591724		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000332065		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000589210		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000335146		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000467929		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000405575		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000411744		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000602720	ENST00000406660		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-3CDS	ENST00000542536	ENST00000607838		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000591724		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000332065		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000589210		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000335146		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000467929		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000405575		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000411744		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
intron-intron	ENST00000542536	ENST00000406660		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SRP68	chr17	74063298	-	EXOC7	chr17	74090662	-
Frame-shit	ENST00000262915	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000262915	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000262915	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000262915	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000262915	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372375	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372375	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372375	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372375	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372375	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000351035	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000351035	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000351035	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000351035	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000351035	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-3CDS	ENST00000372374	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000372374	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000372374	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000372374	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000372374	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000353126	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000353126	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000353126	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000353126	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000353126	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000545417	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000545417	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000545417	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000545417	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000545417	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000330208	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000330208	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000330208	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000330208	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000330208	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000335430	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000335430	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000335430	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000335430	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000335430	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372377	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372377	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372377	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372377	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372377	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000361392	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361392	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361392	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361392	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361392	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000361400	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361400	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361400	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361400	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361400	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000347631	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000347631	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000347631	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000347631	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000347631	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000361812	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361812	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361812	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361812	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361812	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372362	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372362	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372362	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372362	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372362	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000531451	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531451	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531451	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531451	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531451	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372366	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372366	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372366	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372366	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372366	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372365	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372365	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372365	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372365	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372365	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372368	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372368	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372368	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372368	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372368	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-3CDS	ENST00000332628	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000332628	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000332628	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000332628	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
intron-intron	ENST00000332628	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372372	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372372	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372372	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372372	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372372	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000531816	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531816	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531816	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531816	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531816	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000528371	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000528371	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000528371	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000528371	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000528371	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372369	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372369	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372369	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372369	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372369	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000531993	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531993	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531993	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531993	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000531993	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000361746	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361746	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361746	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361746	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000361746	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000533933	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000533933	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000533933	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000533933	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000533933	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
Frame-shit	ENST00000372367	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372367	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372367	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372367	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000372367	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
3UTR-3CDS	ENST00000461375	ENST00000372476		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
3UTR-intron	ENST00000461375	ENST00000433781		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
3UTR-intron	ENST00000461375	ENST00000538015		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
3UTR-intron	ENST00000461375	ENST00000441333		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
3UTR-intron	ENST00000461375	ENST00000473014		TCGA	RV	UCEC	TCGA-BK-A139-02A	ST3GAL3	chr1	44303983	+	TIE1	chr1	43770522	+
5CDS-intron	ENST00000360743	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000360743	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000360743	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000360743	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000358039	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000358039	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000358039	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000358039	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000544629	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000544629	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000544629	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000544629	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000369669	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000369669	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000369669	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-3UTR	ENST00000369669	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000490067	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000490067	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000490067	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000490067	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000369668	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000369668	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000369668	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000369668	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000369666	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000369666	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000369666	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000369666	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000343210	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000343210	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000343210	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000343210	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000538187	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000538187	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000538187	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-3UTR	ENST00000538187	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000463235	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000463235	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-intron	ENST00000463235	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
intron-3UTR	ENST00000463235	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000543570	ENST00000534328		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000543570	ENST00000332231		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-intron	ENST00000543570	ENST00000448903		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5CDS-3UTR	ENST00000543570	ENST00000525891		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ST7L	chr1	113161531	-	AP2A2	chr11	1009100	+
5UTR-3CDS	ENST00000334398	ENST00000430627		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000334398	ENST00000447079		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000334398	ENST00000559545		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000369439	ENST00000430627		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000369439	ENST00000447079		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000369439	ENST00000559545		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000461075	ENST00000430627		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-3CDS	ENST00000461075	ENST00000447079		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
5UTR-intron	ENST00000461075	ENST00000559545		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	TMLHE	chrX	154842453	-	CDK12	chr17	37646810	+
Frame-shit	ENST00000311160	ENST00000289672		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
5CDS-intron	ENST00000311160	ENST00000462350		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
Frame-shit	ENST00000355730	ENST00000289672		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
5CDS-intron	ENST00000355730	ENST00000462350		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
Frame-shit	ENST00000398879	ENST00000289672		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
5CDS-intron	ENST00000398879	ENST00000462350		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
Frame-shit	ENST00000442536	ENST00000289672		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
5CDS-intron	ENST00000442536	ENST00000462350		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
Frame-shit	ENST00000458317	ENST00000289672		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
5CDS-intron	ENST00000458317	ENST00000462350		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
intron-3CDS	ENST00000474346	ENST00000289672		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
intron-intron	ENST00000474346	ENST00000462350		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TNS3	chr7	47474880	-	PKD1L1	chr7	47898483	-
5CDS-5UTR	ENST00000301831	ENST00000251546		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
5CDS-5UTR	ENST00000301831	ENST00000376770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
5CDS-5UTR	ENST00000301831	ENST00000376768		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
5CDS-5UTR	ENST00000301831	ENST00000251547		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
5CDS-5UTR	ENST00000301831	ENST00000376760		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
5CDS-5UTR	ENST00000301831	ENST00000376762		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000420927	ENST00000251546		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000420927	ENST00000376770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000420927	ENST00000376768		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000420927	ENST00000251547		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000420927	ENST00000376760		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000420927	ENST00000376762		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000489118	ENST00000251546		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000489118	ENST00000376770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000489118	ENST00000376768		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000489118	ENST00000251547		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000489118	ENST00000376760		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000489118	ENST00000376762		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000414606	ENST00000251546		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000414606	ENST00000376770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000414606	ENST00000376768		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000414606	ENST00000251547		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000414606	ENST00000376760		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
intron-5UTR	ENST00000414606	ENST00000376762		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ULK4	chr3	41746549	-	FBXO44	chr1	11715863	+
5UTR-5UTR	ENST00000430629	ENST00000355485		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-5UTR	ENST00000430629	ENST00000369510		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-5UTR	ENST00000430629	ENST00000310260		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-intron	ENST00000430629	ENST00000369509		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-intron	ENST00000430629	ENST00000474344		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-5UTR	ENST00000536657	ENST00000355485		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-5UTR	ENST00000536657	ENST00000369510		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-5UTR	ENST00000536657	ENST00000310260		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-intron	ENST00000536657	ENST00000369509		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
5UTR-intron	ENST00000536657	ENST00000474344		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	WASF2	chr1	27816497	-	VANGL1	chr1	116193898	+
Frame-shit	ENST00000554998	ENST00000372009		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000554998	ENST00000361297		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
5CDS-intron	ENST00000554998	ENST00000477968		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000402312	ENST00000372009		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000402312	ENST00000361297		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
5CDS-intron	ENST00000402312	ENST00000477968		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000335290	ENST00000372009		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000335290	ENST00000361297		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
5CDS-intron	ENST00000335290	ENST00000477968		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
intron-3CDS	ENST00000542471	ENST00000372009		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
intron-3CDS	ENST00000542471	ENST00000361297		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
intron-intron	ENST00000542471	ENST00000477968		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000554175	ENST00000372009		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
Frame-shit	ENST00000554175	ENST00000361297		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
5CDS-intron	ENST00000554175	ENST00000477968		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
intron-3CDS	ENST00000557502	ENST00000372009		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
intron-3CDS	ENST00000557502	ENST00000361297		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
intron-intron	ENST00000557502	ENST00000477968		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR25	chr14	100848083	+	MAST2	chr1	46425058	+
5UTR-intron	ENST00000404138	ENST00000454000		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-5UTR	ENST00000404138	ENST00000318220		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000404138	ENST00000478653		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000404138	ENST00000318249		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000404138	ENST00000342104		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000375647	ENST00000454000		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-5UTR	ENST00000375647	ENST00000318220		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000375647	ENST00000478653		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000375647	ENST00000318249		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000375647	ENST00000342104		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000374651	ENST00000454000		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-5UTR	ENST00000374651	ENST00000318220		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000374651	ENST00000478653		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000374651	ENST00000318249		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5UTR-intron	ENST00000374651	ENST00000342104		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ZBTB40	chr1	22778497	+	NBPF3	chr1	21792580	+
5CDS-3UTR	ENST00000372759	ENST00000468258		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZMPSTE24	chr1	40733544	+	TMCO2	chr1	40716955	+
5CDS-3UTR	ENST00000372759	ENST00000372766		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZMPSTE24	chr1	40733544	+	TMCO2	chr1	40716955	+
intron-3UTR	ENST00000479131	ENST00000468258		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZMPSTE24	chr1	40733544	+	TMCO2	chr1	40716955	+
intron-3UTR	ENST00000479131	ENST00000372766		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZMPSTE24	chr1	40733544	+	TMCO2	chr1	40716955	+
5UTR-5UTR	ENST00000446085	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000446085	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000541595	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602738	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000605471	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000602856	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
5UTR-5UTR	ENST00000343499	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000589262	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000434737	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000485760		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000371236		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000371234		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000420954		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000439789		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000414851		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000371231		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
intron-5UTR	ENST00000590616	ENST00000371230		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	ZNF177	chr19	9475624	+	DAB1	chr1	57611102	-
In-frame	ENST00000509528	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000509528	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
In-frame	ENST00000457781	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000457781	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
In-frame	ENST00000505242	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000505242	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
In-frame	ENST00000423823	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000423823	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
In-frame	ENST00000507959	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000507959	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
In-frame	ENST00000446502	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000446502	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
In-frame	ENST00000505365	ENST00000306065		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
5CDS-intron	ENST00000505365	ENST00000587352		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ZNF302	chr19	35169718	+	ANKRD27	chr19	33098738	-
Frame-shit	ENST00000261772	ENST00000202556		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	AARS	chr16	70292883	-	PPP1R13B	chr14	104209160	-
5CDS-5UTR	ENST00000261772	ENST00000423488		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	AARS	chr16	70292883	-	PPP1R13B	chr14	104209160	-
5CDS-5UTR	ENST00000261772	ENST00000555391		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	AARS	chr16	70292883	-	PPP1R13B	chr14	104209160	-
5UTR-3CDS	ENST00000564359	ENST00000202556		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	AARS	chr16	70292883	-	PPP1R13B	chr14	104209160	-
5UTR-5UTR	ENST00000564359	ENST00000423488		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	AARS	chr16	70292883	-	PPP1R13B	chr14	104209160	-
5UTR-5UTR	ENST00000564359	ENST00000555391		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	AARS	chr16	70292883	-	PPP1R13B	chr14	104209160	-
5CDS-5UTR	ENST00000294016	ENST00000327979		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
5CDS-5UTR	ENST00000294016	ENST00000535356		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
5CDS-5UTR	ENST00000294016	ENST00000045083		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
5CDS-intron	ENST00000294016	ENST00000462842		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
intron-5UTR	ENST00000571889	ENST00000327979		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
intron-5UTR	ENST00000571889	ENST00000535356		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
intron-5UTR	ENST00000571889	ENST00000045083		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
intron-intron	ENST00000571889	ENST00000462842		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ADCY9	chr16	4163751	-	FAM65C	chr20	49247393	-
In-frame	ENST00000371839	ENST00000396153		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371839	ENST00000371778		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371839	ENST00000545823		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371839	ENST00000472808		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371838	ENST00000396153		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371838	ENST00000371778		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371838	ENST00000545823		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371838	ENST00000472808		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371836	ENST00000396153		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
In-frame	ENST00000371836	ENST00000371778		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371836	ENST00000545823		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
5CDS-intron	ENST00000371836	ENST00000472808		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000334103	ENST00000396153		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000334103	ENST00000371778		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000334103	ENST00000545823		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000334103	ENST00000472808		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000497451	ENST00000396153		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-3CDS	ENST00000497451	ENST00000371778		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000497451	ENST00000545823		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
intron-intron	ENST00000497451	ENST00000472808		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	AGBL4	chr1	50489435	-	FAF1	chr1	51121200	-
Frame-shit	ENST00000396441	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000396441	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000396441	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000396441	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000389707	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000389707	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000389707	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000389707	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000401424	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000401424	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000401424	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000401424	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
3UTR-3CDS	ENST00000389708	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
3UTR-3CDS	ENST00000389708	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
3UTR-3CDS	ENST00000389708	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
3UTR-intron	ENST00000389708	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000361003	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000361003	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000361003	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000361003	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403290	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403290	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403290	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000403290	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403510	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403510	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403510	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000403510	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403482	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403482	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
Frame-shit	ENST00000403482	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
5CDS-intron	ENST00000403482	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
intron-3CDS	ENST00000497429	ENST00000278174		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
intron-3CDS	ENST00000497429	ENST00000530907		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
intron-3CDS	ENST00000497429	ENST00000528120		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
intron-intron	ENST00000497429	ENST00000532261		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ARNTL	chr11	13402801	+	BTBD10	chr11	13410688	-
In-frame	ENST00000287394	ENST00000355849		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000287394	ENST00000520981		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000287394	ENST00000522578		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
Frame-shit	ENST00000521903	ENST00000355849		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
Frame-shit	ENST00000521903	ENST00000520981		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
5CDS-intron	ENST00000521903	ENST00000522578		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000534257	ENST00000355849		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
intron-3CDS	ENST00000534257	ENST00000520981		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
intron-intron	ENST00000534257	ENST00000522578		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ATAD2	chr8	124346118	-	KHDRBS3	chr8	136533480	+
In-frame	ENST00000308664	ENST00000552912		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000308664	ENST00000242591		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000308664	ENST00000361948		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000308664	ENST00000549009		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000395494	ENST00000552912		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000395494	ENST00000242591		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000395494	ENST00000361948		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000395494	ENST00000549009		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000539276	ENST00000552912		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000539276	ENST00000242591		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
In-frame	ENST00000539276	ENST00000361948		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
5CDS-3UTR	ENST00000539276	ENST00000549009		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000550248	ENST00000552912		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000550248	ENST00000242591		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000550248	ENST00000361948		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3UTR	ENST00000550248	ENST00000549009		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000552636	ENST00000552912		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000552636	ENST00000242591		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3CDS	ENST00000552636	ENST00000361948		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
intron-3UTR	ENST00000552636	ENST00000549009		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ATP2A2	chr12	110765822	+	IFT81	chr12	110600724	+
Frame-shit	ENST00000419234	ENST00000341552		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000419234	ENST00000453220		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000419234	ENST00000441968		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000419234	ENST00000409865		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000419234	ENST00000410037		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000419234	ENST00000295729		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000419234	ENST00000324264		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000539060	ENST00000341552		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000539060	ENST00000453220		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000539060	ENST00000441968		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000539060	ENST00000409865		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000539060	ENST00000410037		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000539060	ENST00000295729		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000539060	ENST00000324264		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000327551	ENST00000341552		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000327551	ENST00000453220		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
Frame-shit	ENST00000327551	ENST00000441968		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000327551	ENST00000409865		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000327551	ENST00000410037		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000327551	ENST00000295729		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
5CDS-intron	ENST00000327551	ENST00000324264		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	BRAP	chr12	112116955	-	CCDC108	chr2	219884441	-
In-frame	ENST00000588427	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588427	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000588427	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000436106	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000436106	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
In-frame	ENST00000588871	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000588871	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000427685	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-intron	ENST00000427685	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000588849	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000588849	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000586564	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000586564	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000592872	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000592872	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
Frame-shit	ENST00000585675	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5CDS-intron	ENST00000585675	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000335762		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399655		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000480911		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399644		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000344100		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399638		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399629		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399597		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000327702		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399649		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399637		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000402845		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399591		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399641		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000347598		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399606		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399595		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399601		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399603		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399634		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000399617		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-3CDS	ENST00000591027	ENST00000406454		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
5UTR-intron	ENST00000591027	ENST00000491104		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	C19orf25	chr19	1478773	-	CACNA1C	chr12	2705040	+
intron-3CDS	ENST00000355854	ENST00000354234		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000355854	ENST00000317257		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000355854	ENST00000481439		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000355854	ENST00000258672		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000347776	ENST00000354234		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000347776	ENST00000317257		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000347776	ENST00000481439		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000347776	ENST00000258672		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000409308	ENST00000354234		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000409308	ENST00000317257		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000409308	ENST00000481439		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000409308	ENST00000258672		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000410043	ENST00000354234		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000410043	ENST00000317257		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000410043	ENST00000481439		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000410043	ENST00000258672		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000409130	ENST00000354234		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-3CDS	ENST00000409130	ENST00000317257		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000409130	ENST00000481439		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
intron-intron	ENST00000409130	ENST00000258672		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
5UTR-3CDS	ENST00000476943	ENST00000354234		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
5UTR-3CDS	ENST00000476943	ENST00000317257		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
5UTR-intron	ENST00000476943	ENST00000481439		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
5UTR-intron	ENST00000476943	ENST00000258672		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CAB39L	chr13	49987048	-	SETDB2	chr13	50064958	+
Frame-shit	ENST00000394524	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394524	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394524	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000454265	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000454265	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000454265	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394526	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394526	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394526	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000429180	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000429180	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000429180	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000296402	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000296402	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000296402	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000418639	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000418639	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000418639	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000511664	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000511664	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000511664	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000342666	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000342666	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000342666	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000515496	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000515496	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000515496	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000514328	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000514328	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000514328	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394522	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394522	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000394522	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000505990	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000505990	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000505990	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000379773	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000379773	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000379773	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000508738	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000508738	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
Frame-shit	ENST00000508738	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
intron-3CDS	ENST00000509907	ENST00000554578		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
intron-3CDS	ENST00000509907	ENST00000332782		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
intron-3CDS	ENST00000509907	ENST00000546246		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638994	-
In-frame	ENST00000263102	ENST00000280772		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC6	chr10	61564178	-	ANK3	chr10	61848116	-
In-frame	ENST00000263102	ENST00000373827		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC6	chr10	61564178	-	ANK3	chr10	61848116	-
In-frame	ENST00000263102	ENST00000355288		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC6	chr10	61564178	-	ANK3	chr10	61848116	-
In-frame	ENST00000263102	ENST00000503366		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC6	chr10	61564178	-	ANK3	chr10	61848116	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC6	chr10	61564178	-	ANK3	chr10	61848116	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC6	chr10	61564178	-	ANK3	chr10	61848116	-
Frame-shit	ENST00000400337	ENST00000359263		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000400337	ENST00000358334		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000400337	ENST00000371501		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000400337	ENST00000371502		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000400337	ENST00000371489		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000400337	ENST00000485212		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000400337	ENST00000371488		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000355480	ENST00000359263		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000355480	ENST00000358334		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000355480	ENST00000371501		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000355480	ENST00000371502		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000355480	ENST00000371489		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000355480	ENST00000485212		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000355480	ENST00000371488		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000359759	ENST00000359263		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000359759	ENST00000358334		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000359759	ENST00000371501		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
Frame-shit	ENST00000359759	ENST00000371502		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000359759	ENST00000371489		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000359759	ENST00000485212		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-intron	ENST00000359759	ENST00000371488		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-3CDS	ENST00000459895	ENST00000359263		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-3CDS	ENST00000459895	ENST00000358334		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-3CDS	ENST00000459895	ENST00000371501		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-3CDS	ENST00000459895	ENST00000371502		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-intron	ENST00000459895	ENST00000371489		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-intron	ENST00000459895	ENST00000485212		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
intron-intron	ENST00000459895	ENST00000371488		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	COL18A1	chr21	46933634	+	MYOF	chr10	95137186	-
5CDS-5UTR	ENST00000280886	ENST00000381602		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000397962		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000309776		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000509513		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000397959		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381591		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000403354		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381607		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000402736		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000602682		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381604		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-5UTR	ENST00000280886	ENST00000381584		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000558098		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000545619		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000535374		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
5CDS-intron	ENST00000280886	ENST00000473115		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000381602		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000397962		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000309776		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000509513		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000397959		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000381591		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000403354		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000381607		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000402736		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000602682		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000381604		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000381496	ENST00000381584		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000381496	ENST00000558098		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000381496	ENST00000545619		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000381496	ENST00000535374		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000381496	ENST00000473115		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381602		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000397962		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000309776		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000509513		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000397959		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381591		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000403354		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381607		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000402736		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000602682		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381604		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-5UTR	ENST00000540204	ENST00000381584		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000558098		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000545619		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000535374		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
intron-intron	ENST00000540204	ENST00000473115		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	DIP2C	chr10	735434	-	ZMYND11	chr10	225934	+
Frame-shit	ENST00000371068	ENST00000340057		TCGA	RV	UCEC	TCGA-PG-A915-01A	EFHC1	chr6	52344585	+	IL17A	chr6	52052401	+
intron-3CDS	ENST00000491749	ENST00000340057		TCGA	RV	UCEC	TCGA-PG-A915-01A	EFHC1	chr6	52344585	+	IL17A	chr6	52052401	+
Frame-shit	ENST00000433625	ENST00000340057		TCGA	RV	UCEC	TCGA-PG-A915-01A	EFHC1	chr6	52344585	+	IL17A	chr6	52052401	+
Frame-shit	ENST00000538167	ENST00000340057		TCGA	RV	UCEC	TCGA-PG-A915-01A	EFHC1	chr6	52344585	+	IL17A	chr6	52052401	+
Frame-shit	ENST00000354666	ENST00000356284		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ELOVL2	chr6	11044461	-	SMOC2	chr6	169051361	+
Frame-shit	ENST00000354666	ENST00000354536		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ELOVL2	chr6	11044461	-	SMOC2	chr6	169051361	+
5CDS-intron	ENST00000354666	ENST00000477998		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ELOVL2	chr6	11044461	-	SMOC2	chr6	169051361	+
Frame-shit	ENST00000288221	ENST00000351747		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
5CDS-intron	ENST00000288221	ENST00000462713		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
5CDS-intron	ENST00000288221	ENST00000344804		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
5CDS-intron	ENST00000288221	ENST00000389536		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
5CDS-intron	ENST00000288221	ENST00000311202		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
intron-3CDS	ENST00000486496	ENST00000351747		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
intron-intron	ENST00000486496	ENST00000462713		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
intron-intron	ENST00000486496	ENST00000344804		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
intron-intron	ENST00000486496	ENST00000389536		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
intron-intron	ENST00000486496	ENST00000311202		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ERC2	chr3	55984453	-	DNAH12	chr3	57357647	-
Frame-shit	ENST00000269214	ENST00000289119		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
5CDS-intron	ENST00000269214	ENST00000580981		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
5CDS-5UTR	ENST00000269214	ENST00000578270		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
5CDS-5UTR	ENST00000269214	ENST00000579875		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
intron-3CDS	ENST00000580101	ENST00000289119		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
intron-intron	ENST00000580101	ENST00000580981		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000580101	ENST00000578270		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
intron-5UTR	ENST00000580101	ENST00000579875		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	ESCO1	chr18	19140820	-	ABHD3	chr18	19244191	-
5CDS-intron	ENST00000230449	ENST00000429054		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
5CDS-intron	ENST00000230449	ENST00000259939		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
5CDS-intron	ENST00000230449	ENST00000486622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
5CDS-intron	ENST00000448181	ENST00000429054		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
5CDS-intron	ENST00000448181	ENST00000259939		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
5CDS-intron	ENST00000448181	ENST00000486622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
intron-intron	ENST00000475028	ENST00000429054		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
intron-intron	ENST00000475028	ENST00000259939		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
intron-intron	ENST00000475028	ENST00000486622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	EXOC2	chr6	532469	-	RNF144B	chr6	18439915	+
In-frame	ENST00000335255	ENST00000390006		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
In-frame	ENST00000335255	ENST00000309794		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
In-frame	ENST00000335255	ENST00000345415		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
In-frame	ENST00000335255	ENST00000457415		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
Frame-shit	ENST00000335255	ENST00000412079		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
5CDS-intron	ENST00000335255	ENST00000581743		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
intron-3CDS	ENST00000529652	ENST00000390006		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
intron-3CDS	ENST00000529652	ENST00000309794		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
intron-3CDS	ENST00000529652	ENST00000345415		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
intron-3CDS	ENST00000529652	ENST00000457415		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
intron-3CDS	ENST00000529652	ENST00000412079		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
intron-intron	ENST00000529652	ENST00000581743		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FOXK2	chr17	80542064	+	NARF	chr17	80441592	+
In-frame	ENST00000376371	ENST00000379887		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	GKAP1	chr9	86414100	-	ARIH1	chr15	72810408	+
5CDS-intron	ENST00000376371	ENST00000562891		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	GKAP1	chr9	86414100	-	ARIH1	chr15	72810408	+
In-frame	ENST00000376365	ENST00000379887		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	GKAP1	chr9	86414100	-	ARIH1	chr15	72810408	+
5CDS-intron	ENST00000376365	ENST00000562891		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	GKAP1	chr9	86414100	-	ARIH1	chr15	72810408	+
intron-3CDS	ENST00000376362	ENST00000379887		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	GKAP1	chr9	86414100	-	ARIH1	chr15	72810408	+
intron-intron	ENST00000376362	ENST00000562891		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	GKAP1	chr9	86414100	-	ARIH1	chr15	72810408	+
5CDS-intron	ENST00000418458	ENST00000513761		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000418458	ENST00000347613		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000418458	ENST00000360642		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000418458	ENST00000504131		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000418458	ENST00000506924		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394799	ENST00000513761		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394799	ENST00000347613		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394799	ENST00000360642		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394799	ENST00000504131		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000394799	ENST00000506924		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000460073	ENST00000513761		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000460073	ENST00000347613		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000460073	ENST00000360642		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000460073	ENST00000504131		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000460073	ENST00000506924		TCGA	RV	UCEC	TCGA-E6-A2P8-01A	GNL3	chr3	52728508	+	CLCN3	chr4	170623929	+
5UTR-3CDS	ENST00000437809	ENST00000368323		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000437809	ENST00000539040		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000437809	ENST00000368322		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000368331	ENST00000368323		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000368331	ENST00000539040		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000368331	ENST00000368322		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000271883	ENST00000368323		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000271883	ENST00000539040		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000271883	ENST00000368322		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000361040	ENST00000368323		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000361040	ENST00000539040		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000361040	ENST00000368322		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000471341	ENST00000368323		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000471341	ENST00000539040		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000471341	ENST00000368322		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155829095	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000332582	ENST00000452443		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	GPR173	chrX	53078666	+	TGM7	chr15	43572149	-
In-frame	ENST00000394997	ENST00000332981		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
In-frame	ENST00000394997	ENST00000555082		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000394997	ENST00000556245		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
In-frame	ENST00000337138	ENST00000332981		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
In-frame	ENST00000337138	ENST00000555082		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000337138	ENST00000556245		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
In-frame	ENST00000323441	ENST00000332981		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
In-frame	ENST00000323441	ENST00000555082		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
5CDS-intron	ENST00000323441	ENST00000556245		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000557538	ENST00000332981		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000557538	ENST00000555082		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-intron	ENST00000557538	ENST00000556245		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000539097	ENST00000332981		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000539097	ENST00000555082		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-intron	ENST00000539097	ENST00000556245		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000557206	ENST00000332981		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000557206	ENST00000555082		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-intron	ENST00000557206	ENST00000556245		TCGA	RV	UCEC	TCGA-EO-A22U-01A	HIF1A	chr14	62162557	+	PRKCH	chr14	61995793	+
intron-3CDS	ENST00000472863	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000472863	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000472863	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000472863	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000472863	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000472863	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000472863	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000472863	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000472863	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000472863	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000472863	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000498678	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000498678	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000498678	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000498678	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000498678	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000498678	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000498678	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000498678	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000498678	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000498678	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000498678	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000460160	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000460160	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000460160	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000460160	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000460160	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000460160	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000460160	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000460160	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000460160	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000460160	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000460160	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000476342	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000476342	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000476342	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000476342	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000476342	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000476342	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000476342	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000476342	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000476342	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000476342	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000476342	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000552000	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000552000	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000552000	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000552000	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000552000	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000552000	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000552000	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000552000	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000552000	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000552000	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000552000	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000470495	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000470495	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000470495	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000470495	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3CDS	ENST00000470495	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000470495	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000470495	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000470495	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-3UTR	ENST00000470495	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000470495	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
intron-intron	ENST00000470495	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000311626	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000311626	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000311626	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000311626	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000311626	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000311626	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000311626	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000311626	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000311626	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000311626	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000311626	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
In-frame	ENST00000490677	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
In-frame	ENST00000490677	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
In-frame	ENST00000490677	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
In-frame	ENST00000490677	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
In-frame	ENST00000490677	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000490677	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000490677	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000490677	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000490677	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-intron	ENST00000490677	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-intron	ENST00000490677	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000485909	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000485909	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000485909	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000485909	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000485909	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000485909	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000485909	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000485909	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000485909	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000485909	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000485909	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000489475	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000489475	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000489475	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000489475	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3CDS	ENST00000489475	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000489475	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000489475	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000489475	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-3UTR	ENST00000489475	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000489475	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5UTR-intron	ENST00000489475	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
Frame-shit	ENST00000465120	ENST00000438423		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
Frame-shit	ENST00000465120	ENST00000267811		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
Frame-shit	ENST00000465120	ENST00000452095		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
Frame-shit	ENST00000465120	ENST00000333725		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
Frame-shit	ENST00000465120	ENST00000557843		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000465120	ENST00000560764		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000465120	ENST00000543579		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000465120	ENST00000537840		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-3UTR	ENST00000465120	ENST00000343827		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-intron	ENST00000465120	ENST00000559710		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
5CDS-intron	ENST00000465120	ENST00000559703		TCGA	RV	UCEC	TCGA-BK-A139-02A	HOXB3	chr17	46651199	-	TCF12	chr15	57523350	+
In-frame	ENST00000342160	ENST00000338154		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
In-frame	ENST00000342160	ENST00000357988		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
In-frame	ENST00000342160	ENST00000338946		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
In-frame	ENST00000342160	ENST00000322659		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
5CDS-intron	ENST00000342160	ENST00000462182		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000262854	ENST00000338154		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000262854	ENST00000357988		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000262854	ENST00000338946		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000262854	ENST00000322659		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
5CDS-intron	ENST00000262854	ENST00000462182		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
intron-3CDS	ENST00000474288	ENST00000338154		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
intron-3CDS	ENST00000474288	ENST00000357988		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
intron-3CDS	ENST00000474288	ENST00000338946		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
intron-3CDS	ENST00000474288	ENST00000322659		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
intron-intron	ENST00000474288	ENST00000462182		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000218328	ENST00000338154		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000218328	ENST00000357988		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000218328	ENST00000338946		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
Frame-shit	ENST00000218328	ENST00000322659		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
5CDS-intron	ENST00000218328	ENST00000462182		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	HUWE1	chrX	53635813	-	PHF8	chrX	54049276	-
5CDS-5UTR	ENST00000268182	ENST00000268154		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	IQGAP1	chr15	90934105	+	ZNF710	chr15	90610342	+
5CDS-intron	ENST00000268182	ENST00000560908		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	IQGAP1	chr15	90934105	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000560738	ENST00000268154		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	IQGAP1	chr15	90934105	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000560738	ENST00000560908		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	IQGAP1	chr15	90934105	+	ZNF710	chr15	90610342	+
intron-5UTR	ENST00000560020	ENST00000268154		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	IQGAP1	chr15	90934105	+	ZNF710	chr15	90610342	+
intron-intron	ENST00000560020	ENST00000560908		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	IQGAP1	chr15	90934105	+	ZNF710	chr15	90610342	+
5CDS-5UTR	ENST00000524189	ENST00000356757		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000524189	ENST00000336655		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000524189	ENST00000497775		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000521515	ENST00000356757		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
5CDS-5UTR	ENST00000521515	ENST00000336655		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
5CDS-intron	ENST00000521515	ENST00000497775		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
intron-5UTR	ENST00000404075	ENST00000356757		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
intron-5UTR	ENST00000404075	ENST00000336655		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
intron-intron	ENST00000404075	ENST00000497775		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	KIF13B	chr8	29102863	-	TMEM217	chr6	37186817	-
intron-intron	ENST00000446828	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000446828	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000424227	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000443863	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000535426	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
5UTR-intron	ENST00000265026	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000448876	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000454237	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000552276		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000435558		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000551178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000547178		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000225328		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000345901		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000552050		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
intron-intron	ENST00000438798	ENST00000550772		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP3K13	chr3	185081156	+	P2RX5	chr17	3577171	-
Frame-shit	ENST00000377809	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000402010	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000413835	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
5UTR-3CDS	ENST00000377810	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000315032	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000508192	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000361128	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000350490	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
Frame-shit	ENST00000502399	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000509502	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000513765	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000408948	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000425897	ENST00000294244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	MARK2	chr11	63607032	+	C11orf84	chr11	63585277	+
intron-3CDS	ENST00000262966	ENST00000262962		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	MPND	chr19	4358169	+	CCDC94	chr19	4251024	+
Frame-shit	ENST00000359935	ENST00000262962		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	MPND	chr19	4358169	+	CCDC94	chr19	4251024	+
Frame-shit	ENST00000599840	ENST00000262962		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	MPND	chr19	4358169	+	CCDC94	chr19	4251024	+
intron-3CDS	ENST00000368395	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
intron-3CDS	ENST00000368395	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
intron-3CDS	ENST00000368395	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
intron-5UTR	ENST00000368395	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000338684	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000338684	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000338684	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000338684	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000438413	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000438413	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000438413	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000438413	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000457295	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000457295	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000457295	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000457295	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5UTR-3CDS	ENST00000462215	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5UTR-3CDS	ENST00000462215	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5UTR-3CDS	ENST00000462215	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5UTR-5UTR	ENST00000462215	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368392	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368392	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368392	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000368392	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368393	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368393	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368393	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000368393	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368390	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368390	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368390	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000368390	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368396	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368396	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368396	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000368396	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000343256	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000343256	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000343256	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000343256	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368398	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368398	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368398	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000368398	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368389	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368389	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000368389	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000368389	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000342482	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000342482	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000342482	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000342482	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000337604	ENST00000350210		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000337604	ENST00000368368		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
In-frame	ENST00000337604	ENST00000361361		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
5CDS-5UTR	ENST00000337604	ENST00000472550		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	MUC1	chr1	155161974	-	FAM189B	chr1	155220955	-
Frame-shit	ENST00000360416	ENST00000293845		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000360416	ENST00000539522		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000379980	ENST00000293845		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000379980	ENST00000539522		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000396239	ENST00000293845		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000396239	ENST00000539522		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000269243	ENST00000293845		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
Frame-shit	ENST00000269243	ENST00000539522		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	MYH10	chr17	8404144	-	CCDC42	chr17	8638572	-
intron-3CDS	ENST00000550697	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000550697	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000550697	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000550697	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000550697	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548580	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548580	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548580	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548580	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000548580	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000293422	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000293422	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000293422	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000293422	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000293422	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000348108	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000348108	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000348108	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000348108	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000348108	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549017	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549017	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549017	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549017	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000549017	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549566	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549566	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549566	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000549566	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000549566	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000536128	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000536128	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000536128	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000536128	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000536128	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000547649	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000547649	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000547649	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000547649	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000547649	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000547408	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000547408	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000547408	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000547408	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-intron	ENST00000547408	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000551589	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000551589	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000551589	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000551589	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000551589	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548400	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548400	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548400	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548400	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000548400	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548293	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548293	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548293	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-3CDS	ENST00000548293	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
intron-intron	ENST00000548293	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000551954	ENST00000394023		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000551954	ENST00000550164		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000551954	ENST00000347471		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-3CDS	ENST00000551954	ENST00000267064		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
3UTR-intron	ENST00000551954	ENST00000550859		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MYL6	chr12	56556115	+	SMARCC2	chr12	56561978	-
5UTR-5UTR	ENST00000341724	ENST00000357410		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000341724	ENST00000327619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000341724	ENST00000497428		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000341724	ENST00000317304		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000372004	ENST00000357410		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000372004	ENST00000327619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000372004	ENST00000497428		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000372004	ENST00000317304		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371998	ENST00000357410		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371998	ENST00000327619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371998	ENST00000497428		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371998	ENST00000317304		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371997	ENST00000357410		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000371997	ENST00000327619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371997	ENST00000497428		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000371997	ENST00000317304		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000497292	ENST00000357410		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000497292	ENST00000327619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000497292	ENST00000497428		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000497292	ENST00000317304		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	NCOA3	chr20	46212005	+	EYA2	chr20	45618640	+
Frame-shit	ENST00000277541	ENST00000497771		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NOTCH1	chr9	139438476	-	LCN10	chr9	139634500	-
Frame-shit	ENST00000277541	ENST00000527229		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NOTCH1	chr9	139438476	-	LCN10	chr9	139634500	-
Frame-shit	ENST00000277541	ENST00000474369		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NOTCH1	chr9	139438476	-	LCN10	chr9	139634500	-
intron-3CDS	ENST00000491649	ENST00000497771		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NOTCH1	chr9	139438476	-	LCN10	chr9	139634500	-
intron-3CDS	ENST00000491649	ENST00000527229		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NOTCH1	chr9	139438476	-	LCN10	chr9	139634500	-
intron-3CDS	ENST00000491649	ENST00000474369		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NOTCH1	chr9	139438476	-	LCN10	chr9	139634500	-
Frame-shit	ENST00000428206	ENST00000339594		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000428206	ENST00000404251		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000252594	ENST00000339594		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000252594	ENST00000404251		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000438747	ENST00000339594		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000438747	ENST00000404251		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000310326	ENST00000339594		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000310326	ENST00000404251		TCGA	RV	UCEC	TCGA-EY-A54A-01A	NSUN5	chr7	72721391	-	BAZ1B	chr7	72865324	-
Frame-shit	ENST00000300291	ENST00000568104		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	NUDT21	chr16	56484999	-	BBS2	chr16	56519650	-
Frame-shit	ENST00000300291	ENST00000245157		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	NUDT21	chr16	56484999	-	BBS2	chr16	56519650	-
5CDS-intron	ENST00000300291	ENST00000561951		TCGA	RV	UCEC	TCGA-DF-A2KN-01A	NUDT21	chr16	56484999	-	BBS2	chr16	56519650	-
Frame-shit	ENST00000324932	ENST00000319080		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000324932	ENST00000538698		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000324932	ENST00000377037		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000324932	ENST00000535996		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
In-frame	ENST00000359171	ENST00000319080		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000359171	ENST00000538698		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000359171	ENST00000377037		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000359171	ENST00000535996		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
Frame-shit	ENST00000355260	ENST00000319080		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000355260	ENST00000538698		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000355260	ENST00000377037		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000355260	ENST00000535996		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
Frame-shit	ENST00000397004	ENST00000319080		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000397004	ENST00000538698		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000397004	ENST00000377037		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000397004	ENST00000535996		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
Frame-shit	ENST00000397007	ENST00000319080		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000397007	ENST00000538698		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000397007	ENST00000377037		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
5CDS-intron	ENST00000397007	ENST00000535996		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
intron-3CDS	ENST00000488828	ENST00000319080		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
intron-intron	ENST00000488828	ENST00000538698		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
intron-intron	ENST00000488828	ENST00000377037		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
intron-intron	ENST00000488828	ENST00000535996		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	NUP98	chr11	3789811	-	MLXIP	chr12	122611803	+
intron-intron	ENST00000217074	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-5UTR	ENST00000217074	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000217074	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-5UTR	ENST00000255136	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000255136	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-5UTR	ENST00000537323	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
3UTR-intron	ENST00000537323	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-5UTR	ENST00000217073	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217073	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-5UTR	ENST00000490798	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
intron-intron	ENST00000490798	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-5UTR	ENST00000372824	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372824	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-5UTR	ENST00000372819	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000372819	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000372891		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000372894		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000372892		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-5UTR	ENST00000217075	ENST00000372889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000372887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000372882		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000477390		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000372886		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
5CDS-intron	ENST00000217075	ENST00000349959		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PABPC1L	chr20	43561826	+	PKIG	chr20	43227257	+
In-frame	ENST00000338154	ENST00000375180		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
Frame-shit	ENST00000338154	ENST00000328235		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000338154	ENST00000497680		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000338154	ENST00000477084		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
Frame-shit	ENST00000357988	ENST00000375180		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
In-frame	ENST00000357988	ENST00000328235		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000357988	ENST00000497680		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000357988	ENST00000477084		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
In-frame	ENST00000338946	ENST00000375180		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
Frame-shit	ENST00000338946	ENST00000328235		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000338946	ENST00000497680		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000338946	ENST00000477084		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
In-frame	ENST00000322659	ENST00000375180		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
Frame-shit	ENST00000322659	ENST00000328235		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000322659	ENST00000497680		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5CDS-intron	ENST00000322659	ENST00000477084		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5UTR-3CDS	ENST00000462182	ENST00000375180		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5UTR-3CDS	ENST00000462182	ENST00000328235		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5UTR-intron	ENST00000462182	ENST00000497680		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
5UTR-intron	ENST00000462182	ENST00000477084		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	PHF8	chrX	54069064	-	FAM120C	chrX	54099720	-
Frame-shit	ENST00000407936	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
5CDS-intron	ENST00000407936	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000405557	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000405557	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000442738	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000442738	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000460648	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000460648	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000488684	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000488684	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000606538	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000606538	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000470701	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000470701	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000608713	ENST00000215957		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-intron	ENST00000608713	ENST00000402631		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	POLR2F	chr22	38382319	+	MICALL1	chr22	38308358	+
intron-3CDS	ENST00000515029	ENST00000357685		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
intron-3CDS	ENST00000515029	ENST00000393032		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
intron-3CDS	ENST00000515029	ENST00000361053		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
intron-3CDS	ENST00000515029	ENST00000438022		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
intron-3CDS	ENST00000515029	ENST00000526088		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
intron-3CDS	ENST00000515029	ENST00000532593		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
intron-3CDS	ENST00000515029	ENST00000531169		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000357685		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000393032		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000361053		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000438022		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000526088		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000532593		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
In-frame	ENST00000393067	ENST00000531169		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	POU2AF1	chr11	111228170	-	BCO2	chr11	112084447	+
5CDS-3UTR	ENST00000358506	ENST00000460736		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000358506	ENST00000379619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000358506	ENST00000264716		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-5UTR	ENST00000358506	ENST00000545753		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000296122	ENST00000460736		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000296122	ENST00000379619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000296122	ENST00000264716		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-5UTR	ENST00000296122	ENST00000545753		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000395366	ENST00000460736		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000395366	ENST00000379619		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-3UTR	ENST00000395366	ENST00000264716		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
5CDS-5UTR	ENST00000395366	ENST00000545753		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	PPP1CB	chr2	28975042	+	FOSL2	chr2	28626974	+
intron-3CDS	ENST00000413292	ENST00000530444		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
intron-3CDS	ENST00000413292	ENST00000536065		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
intron-3CDS	ENST00000413292	ENST00000432175		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
intron-3CDS	ENST00000413292	ENST00000301896		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
In-frame	ENST00000164133	ENST00000530444		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
In-frame	ENST00000164133	ENST00000536065		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000164133	ENST00000432175		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
Frame-shit	ENST00000164133	ENST00000301896		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PPP2R5B	chr11	64699340	+	C11orf85	chr11	64708118	-
In-frame	ENST00000368226	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368226	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368226	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368226	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368226	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368226	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368226	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368227	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368227	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368227	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368227	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368227	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368227	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368227	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000532331	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000532331	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000532331	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000532331	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000532331	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000532331	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000532331	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368213	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368213	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368213	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368213	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368213	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368213	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368213	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368210	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368210	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368210	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368210	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368210	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368210	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368210	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368215	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368215	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368215	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368215	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368215	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368215	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368215	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368207	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368207	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000368207	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368207	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368207	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368207	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000368207	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-3CDS	ENST00000524481	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-3CDS	ENST00000524481	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-3CDS	ENST00000524481	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-intron	ENST00000524481	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-intron	ENST00000524481	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-intron	ENST00000524481	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-intron	ENST00000524481	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000525459	ENST00000503581		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000525459	ENST00000370621		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
In-frame	ENST00000525459	ENST00000370616		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000525459	ENST00000393380		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000525459	ENST00000342421		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000525459	ENST00000370618		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5CDS-intron	ENST00000525459	ENST00000486069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PTPRK	chr6	128841404	-	EYS	chr6	65303202	-
5UTR-3CDS	ENST00000319592	ENST00000295974		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000319592	ENST00000513140		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000319592	ENST00000508593		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000319592	ENST00000506352		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000319592	ENST00000511572		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000319592	ENST00000543538		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000319592	ENST00000502841		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000319592	ENST00000504305		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381793	ENST00000295974		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381793	ENST00000513140		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381793	ENST00000508593		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381793	ENST00000506352		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381793	ENST00000511572		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381793	ENST00000543538		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381793	ENST00000502841		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381793	ENST00000504305		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381795	ENST00000295974		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381795	ENST00000513140		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381795	ENST00000508593		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000381795	ENST00000506352		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381795	ENST00000511572		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381795	ENST00000543538		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381795	ENST00000502841		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000381795	ENST00000504305		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000295971	ENST00000295974		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000295971	ENST00000513140		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000295971	ENST00000508593		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-3CDS	ENST00000295971	ENST00000506352		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000295971	ENST00000511572		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000295971	ENST00000543538		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000295971	ENST00000502841		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
5UTR-intron	ENST00000295971	ENST00000504305		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000514014	ENST00000295974		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000514014	ENST00000513140		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000514014	ENST00000508593		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000514014	ENST00000506352		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000514014	ENST00000511572		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000514014	ENST00000543538		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000514014	ENST00000502841		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000514014	ENST00000504305		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000515809	ENST00000295974		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000515809	ENST00000513140		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000515809	ENST00000508593		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-3CDS	ENST00000515809	ENST00000506352		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000515809	ENST00000511572		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000515809	ENST00000543538		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000515809	ENST00000502841		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
intron-intron	ENST00000515809	ENST00000504305		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RBM47	chr4	40631413	-	APBB2	chr4	40818276	-
Frame-shit	ENST00000531287	ENST00000324225		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000531287	ENST00000431081		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-3UTR	ENST00000531287	ENST00000530948		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-intron	ENST00000531287	ENST00000532062		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000531452	ENST00000324225		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000531452	ENST00000431081		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-3UTR	ENST00000531452	ENST00000530948		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-intron	ENST00000531452	ENST00000532062		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000530849	ENST00000324225		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000530849	ENST00000431081		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-3UTR	ENST00000530849	ENST00000530948		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-intron	ENST00000530849	ENST00000532062		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000300650	ENST00000324225		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
Frame-shit	ENST00000300650	ENST00000431081		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-3UTR	ENST00000300650	ENST00000530948		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5CDS-intron	ENST00000300650	ENST00000532062		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
intron-3CDS	ENST00000524917	ENST00000324225		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
intron-3CDS	ENST00000524917	ENST00000431081		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
intron-3UTR	ENST00000524917	ENST00000530948		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
intron-intron	ENST00000524917	ENST00000532062		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	RNF214	chr11	117117664	+	SIDT2	chr11	117054790	+
5UTR-3CDS	ENST00000394817	ENST00000302060		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
5UTR-intron	ENST00000394817	ENST00000505268		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
5UTR-3CDS	ENST00000265195	ENST00000302060		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
5UTR-intron	ENST00000265195	ENST00000505268		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
intron-3CDS	ENST00000509534	ENST00000302060		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
intron-intron	ENST00000509534	ENST00000505268		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
intron-3CDS	ENST00000515008	ENST00000302060		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
intron-intron	ENST00000515008	ENST00000505268		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	SIL1	chr5	138533958	-	DNAJC18	chr5	138760803	-
5UTR-3CDS	ENST00000219343	ENST00000413021		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-3CDS	ENST00000219343	ENST00000219345		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-3CDS	ENST00000219343	ENST00000566188		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-intron	ENST00000219343	ENST00000444212		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-intron	ENST00000219343	ENST00000568599		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-3CDS	ENST00000566454	ENST00000413021		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-3CDS	ENST00000566454	ENST00000219345		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-3CDS	ENST00000566454	ENST00000566188		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-intron	ENST00000566454	ENST00000444212		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
5UTR-intron	ENST00000566454	ENST00000568599		TCGA	RV	UCEC	TCGA-BK-A139-02A	SLC7A6	chr16	68300624	+	PLA2G15	chr16	68288822	+
intron-3CDS	ENST00000262188	ENST00000287878		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000262188	ENST00000418337		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000262188	ENST00000433631		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000262188	ENST00000492843		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000262188	ENST00000392801		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-intron	ENST00000262188	ENST00000461529		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
Frame-shit	ENST00000392811	ENST00000287878		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000392811	ENST00000418337		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000392811	ENST00000433631		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000392811	ENST00000492843		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000392811	ENST00000392801		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-intron	ENST00000392811	ENST00000461529		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
Frame-shit	ENST00000356800	ENST00000287878		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000356800	ENST00000418337		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000356800	ENST00000433631		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000356800	ENST00000492843		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-5UTR	ENST00000356800	ENST00000392801		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
5CDS-intron	ENST00000356800	ENST00000461529		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-3CDS	ENST00000477169	ENST00000287878		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000477169	ENST00000418337		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000477169	ENST00000433631		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000477169	ENST00000492843		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-5UTR	ENST00000477169	ENST00000392801		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
intron-intron	ENST00000477169	ENST00000461529		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMARCD3	chr7	150972200	-	PRKAG2	chr7	151329224	-
Frame-shit	ENST00000305513	ENST00000333813		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SMYD4	chr17	1731155	-	TUSC5	chr17	1201545	+
Frame-shit	ENST00000426016	ENST00000366991		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
Frame-shit	ENST00000426016	ENST00000542077		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
5CDS-3UTR	ENST00000426016	ENST00000475419		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
Frame-shit	ENST00000402219	ENST00000366991		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
Frame-shit	ENST00000402219	ENST00000542077		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
5CDS-3UTR	ENST00000402219	ENST00000475419		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
Frame-shit	ENST00000395038	ENST00000366991		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
Frame-shit	ENST00000395038	ENST00000542077		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
5CDS-3UTR	ENST00000395038	ENST00000475419		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
intron-3CDS	ENST00000428721	ENST00000366991		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
intron-3CDS	ENST00000428721	ENST00000542077		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
intron-3UTR	ENST00000428721	ENST00000475419		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
intron-3CDS	ENST00000472480	ENST00000366991		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
intron-3CDS	ENST00000472480	ENST00000542077		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
intron-3UTR	ENST00000472480	ENST00000475419		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SOS1	chr2	39249711	-	DTL	chr1	212251515	+
Frame-shit	ENST00000383836	ENST00000287585		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000383836	ENST00000495730		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
Frame-shit	ENST00000360413	ENST00000287585		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000360413	ENST00000495730		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
intron-3CDS	ENST00000433332	ENST00000287585		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
intron-intron	ENST00000433332	ENST00000495730		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
Frame-shit	ENST00000548724	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
Frame-shit	ENST00000396700	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
In-frame	ENST00000323944	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
Frame-shit	ENST00000419632	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
In-frame	ENST00000546511	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
In-frame	ENST00000550887	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
In-frame	ENST00000358326	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
intron-3CDS	ENST00000548369	ENST00000341698		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	STXBP6	chr14	25443871	-	TMEM189-UBE2V1	chr20	48760158	-
In-frame	ENST00000369902	ENST00000369983		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000369902	ENST00000476019		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
In-frame	ENST00000369899	ENST00000369983		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000369899	ENST00000476019		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
In-frame	ENST00000423559	ENST00000369983		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
5CDS-intron	ENST00000423559	ENST00000476019		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
intron-3CDS	ENST00000471000	ENST00000369983		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
intron-intron	ENST00000471000	ENST00000476019		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SUFU	chr10	104309863	+	GBF1	chr10	104111013	+
Frame-shit	ENST00000599117	ENST00000409794		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000599117	ENST00000378550		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000599117	ENST00000425673		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000599117	ENST00000458508		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000599117	ENST00000409797		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000432763	ENST00000409794		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000432763	ENST00000378550		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000432763	ENST00000425673		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000432763	ENST00000458508		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000432763	ENST00000409797		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000402194	ENST00000409794		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000402194	ENST00000378550		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000402194	ENST00000425673		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000402194	ENST00000458508		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000402194	ENST00000409797		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000359191	ENST00000409794		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000359191	ENST00000378550		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000359191	ENST00000425673		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000359191	ENST00000458508		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000359191	ENST00000409797		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000598725	ENST00000409794		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000598725	ENST00000378550		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000598725	ENST00000425673		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000598725	ENST00000458508		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
Frame-shit	ENST00000598725	ENST00000409797		TCGA	RV	UCEC	TCGA-PG-A914-01A	SUPT5H	chr19	39944161	+	PLEKHG2	chr19	39915878	+
5CDS-5UTR	ENST00000257915	ENST00000389243		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000257915	ENST00000333640		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000257915	ENST00000550824		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000257915	ENST00000547854		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000307660	ENST00000389243		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000307660	ENST00000333640		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000307660	ENST00000550824		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000307660	ENST00000547854		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000549867	ENST00000389243		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000549867	ENST00000333640		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000549867	ENST00000550824		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000549867	ENST00000547854		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000548115	ENST00000389243		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000548115	ENST00000333640		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-intron	ENST00000548115	ENST00000550824		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-5UTR	ENST00000548115	ENST00000547854		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TFCP2	chr12	51566084	-	POU6F1	chr12	51598151	-
5CDS-3UTR	ENST00000606498	ENST00000511250		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000606498	ENST00000308497		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000606498	ENST00000438269		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000294613	ENST00000511250		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000294613	ENST00000308497		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000294613	ENST00000438269		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000371180	ENST00000511250		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000371180	ENST00000308497		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000371180	ENST00000438269		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
intron-3UTR	ENST00000472989	ENST00000511250		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
intron-3UTR	ENST00000472989	ENST00000308497		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
intron-3UTR	ENST00000472989	ENST00000438269		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000371177	ENST00000511250		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000371177	ENST00000308497		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5CDS-3UTR	ENST00000371177	ENST00000438269		TCGA	RV	UCEC	TCGA-EY-A54A-01A	TM2D1	chr1	62189385	-	STOX2	chr4	184922478	+
5UTR-3CDS	ENST00000361906	ENST00000405510		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
5UTR-3CDS	ENST00000361906	ENST00000216064		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
5UTR-3CDS	ENST00000361906	ENST00000405018		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
5UTR-3CDS	ENST00000361906	ENST00000406622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
5UTR-3CDS	ENST00000361906	ENST00000411587		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000361684	ENST00000405510		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000361684	ENST00000216064		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000361684	ENST00000405018		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000361684	ENST00000406622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000361684	ENST00000411587		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000504337	ENST00000405510		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000504337	ENST00000216064		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000504337	ENST00000405018		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000504337	ENST00000406622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
intron-3CDS	ENST00000504337	ENST00000411587		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	TMEM184B	chr22	38668890	-	SUN2	chr22	39141816	-
Frame-shit	ENST00000398571	ENST00000249064		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
5CDS-intron	ENST00000398571	ENST00000448492		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
5CDS-intron	ENST00000398571	ENST00000421503		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
5CDS-5UTR	ENST00000398571	ENST00000443309		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
intron-3CDS	ENST00000472689	ENST00000249064		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
intron-intron	ENST00000472689	ENST00000448492		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
intron-intron	ENST00000472689	ENST00000421503		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
intron-5UTR	ENST00000472689	ENST00000443309		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP34	chr2	61697785	-	CCDC117	chr22	29169713	+
In-frame	ENST00000367927	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000367927	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000367927	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000367927	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000367927	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000367927	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000367927	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000367927	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000367927	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000207771	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000207771	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000207771	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000425515	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000425515	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000425515	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000427187	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000427187	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000427187	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000414302	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000414302	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000414302	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000509351	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000509351	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000509351	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000275223	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000275223	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000275223	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000423615	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000423615	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000423615	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000417437	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000417437	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000417437	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000519686	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000519686	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000519686	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
In-frame	ENST00000392393	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000392393	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000392393	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000450865	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000450865	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000450865	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-3CDS	ENST00000580813	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-5UTR	ENST00000580813	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
intron-intron	ENST00000580813	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000368226		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000368227		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000532331		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000368213		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000368210		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000368215		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000392394	ENST00000368207		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-5UTR	ENST00000392394	ENST00000524481		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
5CDS-intron	ENST00000392394	ENST00000525459		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	VNN3	chr6	133055392	-	PTPRK	chr6	128563747	-
Frame-shit	ENST00000540593	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
Frame-shit	ENST00000324593	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
intron-3CDS	ENST00000412490	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
Frame-shit	ENST00000442160	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
Frame-shit	ENST00000555044	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
Frame-shit	ENST00000334521	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
intron-3CDS	ENST00000556797	ENST00000326303		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ZNF410	chr14	74390225	+	ACOT4	chr14	74060406	+
Frame-shit	ENST00000293217	ENST00000307877		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
Frame-shit	ENST00000293217	ENST00000539137		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
Frame-shit	ENST00000293217	ENST00000355113		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000293217	ENST00000602720		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000293217	ENST00000542536		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
In-frame	ENST00000537812	ENST00000307877		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
In-frame	ENST00000537812	ENST00000539137		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
In-frame	ENST00000537812	ENST00000355113		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000537812	ENST00000602720		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000537812	ENST00000542536		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
Frame-shit	ENST00000301608	ENST00000307877		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
Frame-shit	ENST00000301608	ENST00000539137		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
Frame-shit	ENST00000301608	ENST00000355113		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000301608	ENST00000602720		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000301608	ENST00000542536		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
intron-3CDS	ENST00000591857	ENST00000307877		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
intron-3CDS	ENST00000591857	ENST00000539137		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
intron-3CDS	ENST00000591857	ENST00000355113		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
intron-intron	ENST00000591857	ENST00000602720		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
intron-intron	ENST00000591857	ENST00000542536		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ACOX1	chr17	73951647	-	SRP68	chr17	74060252	-
5CDS-intron	ENST00000263640	ENST00000283233		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000263640	ENST00000409187		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000263640	ENST00000536771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000263640	ENST00000409889		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000263640	ENST00000491563		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000409283	ENST00000283233		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000409283	ENST00000409187		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000409283	ENST00000536771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000409283	ENST00000409889		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000409283	ENST00000491563		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000434821	ENST00000283233		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000434821	ENST00000409187		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000434821	ENST00000536771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000434821	ENST00000409889		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000434821	ENST00000491563		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000410057	ENST00000283233		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000410057	ENST00000409187		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000410057	ENST00000536771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000410057	ENST00000409889		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-intron	ENST00000410057	ENST00000491563		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
intron-intron	ENST00000487456	ENST00000283233		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
intron-intron	ENST00000487456	ENST00000409187		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
intron-intron	ENST00000487456	ENST00000536771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
intron-intron	ENST00000487456	ENST00000409889		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
intron-intron	ENST00000487456	ENST00000491563		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ACVR1	chr2	158655939	-	CCDC148	chr2	159145348	-
5CDS-5UTR	ENST00000395146	ENST00000329402		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	AFF1	chr4	87869723	+	GAST	chr17	39871684	+
intron-5UTR	ENST00000307808	ENST00000329402		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	AFF1	chr4	87869723	+	GAST	chr17	39871684	+
intron-5UTR	ENST00000544085	ENST00000329402		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	AFF1	chr4	87869723	+	GAST	chr17	39871684	+
3UTR-5UTR	ENST00000511996	ENST00000329402		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	AFF1	chr4	87869723	+	GAST	chr17	39871684	+
5CDS-5UTR	ENST00000434513	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000434513	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000434513	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000434513	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000361221	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000361221	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000361221	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000361221	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000452522	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000452522	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000452522	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000452522	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000375415	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-5UTR	ENST00000375415	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000375415	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5CDS-3UTR	ENST00000375415	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000375420	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5UTR-5UTR	ENST00000375420	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000375420	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
5UTR-3UTR	ENST00000375420	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000469726	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000469726	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000469726	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000469726	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000375408	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000375408	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000375408	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000375408	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000167825	ENST00000357410		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-5UTR	ENST00000167825	ENST00000327619		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000167825	ENST00000497428		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
intron-3UTR	ENST00000167825	ENST00000317304		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ARHGEF10L	chr1	17914974	+	EYA2	chr20	45618640	+
Frame-shit	ENST00000357668	ENST00000282881		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000357668	ENST00000539744		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000357668	ENST00000458174		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000357668	ENST00000445693		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000357668	ENST00000413632		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000518721	ENST00000282881		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000518721	ENST00000539744		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000518721	ENST00000458174		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000518721	ENST00000445693		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
Frame-shit	ENST00000518721	ENST00000413632		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
intron-3CDS	ENST00000520625	ENST00000282881		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
intron-3CDS	ENST00000520625	ENST00000539744		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
intron-3CDS	ENST00000520625	ENST00000458174		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
intron-3CDS	ENST00000520625	ENST00000445693		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
intron-3CDS	ENST00000520625	ENST00000413632		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	ASAP1	chr8	131370263	-	IFLTD1	chr12	25679889	-
In-frame	ENST00000355831	ENST00000283249		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000355831	ENST00000485635		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000355831	ENST00000428609		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000355831	ENST00000409967		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000355831	ENST00000409872		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
In-frame	ENST00000343439	ENST00000283249		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000343439	ENST00000485635		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000343439	ENST00000428609		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000343439	ENST00000409967		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000343439	ENST00000409872		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
In-frame	ENST00000392782	ENST00000283249		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392782	ENST00000485635		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392782	ENST00000428609		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392782	ENST00000409967		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392782	ENST00000409872		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
In-frame	ENST00000392783	ENST00000283249		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392783	ENST00000485635		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392783	ENST00000428609		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392783	ENST00000409967		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
5CDS-5UTR	ENST00000392783	ENST00000409872		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
intron-3CDS	ENST00000483316	ENST00000283249		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
intron-5UTR	ENST00000483316	ENST00000485635		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
intron-5UTR	ENST00000483316	ENST00000428609		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
intron-5UTR	ENST00000483316	ENST00000409967		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
intron-5UTR	ENST00000483316	ENST00000409872		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	BAZ2B	chr2	160229556	-	ITGB6	chr2	161030650	-
In-frame	ENST00000538010	ENST00000396720		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	BCL7A	chr12	122492832	+	GLTSCR1	chr19	48197372	+
In-frame	ENST00000261822	ENST00000396720		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	BCL7A	chr12	122492832	+	GLTSCR1	chr19	48197372	+
Frame-shit	ENST00000373886	ENST00000287263		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
Frame-shit	ENST00000373886	ENST00000330843		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000373886	ENST00000522727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
5CDS-intron	ENST00000373886	ENST00000523182		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
5CDS-5UTR	ENST00000373886	ENST00000524118		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
intron-3CDS	ENST00000263103	ENST00000287263		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
intron-3CDS	ENST00000263103	ENST00000330843		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
intron-5UTR	ENST00000263103	ENST00000522727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
intron-intron	ENST00000263103	ENST00000523182		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
intron-5UTR	ENST00000263103	ENST00000524118		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
3UTR-3CDS	ENST00000476684	ENST00000287263		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
3UTR-3CDS	ENST00000476684	ENST00000330843		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
3UTR-5UTR	ENST00000476684	ENST00000522727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
3UTR-intron	ENST00000476684	ENST00000523182		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
3UTR-5UTR	ENST00000476684	ENST00000524118		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	BICC1	chr10	60380661	+	RAB11FIP1	chr8	37735069	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A139-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32854486	+
5CDS-5UTR	ENST00000378618	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000378618	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000536126	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000536126	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000278460	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000278460	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000395460	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000395460	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000378615	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000378615	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000543718	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
5CDS-5UTR	ENST00000543718	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
3UTR-5UTR	ENST00000527268	ENST00000298838		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
3UTR-5UTR	ENST00000527268	ENST00000539589		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	C11orf49	chr11	47159280	+	PACSIN3	chr11	47204620	-
In-frame	ENST00000377022	ENST00000370205		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CASZ1	chr1	10753931	-	ALG14	chr1	95530573	-
5CDS-5UTR	ENST00000377022	ENST00000495856		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CASZ1	chr1	10753931	-	ALG14	chr1	95530573	-
In-frame	ENST00000344008	ENST00000370205		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CASZ1	chr1	10753931	-	ALG14	chr1	95530573	-
5CDS-5UTR	ENST00000344008	ENST00000495856		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CASZ1	chr1	10753931	-	ALG14	chr1	95530573	-
5UTR-3CDS	ENST00000478728	ENST00000370205		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CASZ1	chr1	10753931	-	ALG14	chr1	95530573	-
5UTR-5UTR	ENST00000478728	ENST00000495856		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CASZ1	chr1	10753931	-	ALG14	chr1	95530573	-
Frame-shit	ENST00000561924	ENST00000338437		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
5CDS-5UTR	ENST00000561924	ENST00000394069		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
Frame-shit	ENST00000290858	ENST00000338437		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
5CDS-5UTR	ENST00000290858	ENST00000394069		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
Frame-shit	ENST00000412916	ENST00000338437		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
5CDS-5UTR	ENST00000412916	ENST00000394069		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
intron-3CDS	ENST00000568858	ENST00000338437		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
intron-5UTR	ENST00000568858	ENST00000394069		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CBFB	chr16	67100701	+	CA7	chr16	66880933	+
Frame-shit	ENST00000535016	ENST00000373644		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	CCAR1	chr10	70517134	+	TET1	chr10	70432652	+
Frame-shit	ENST00000265872	ENST00000373644		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	CCAR1	chr10	70517134	+	TET1	chr10	70432652	+
Frame-shit	ENST00000543719	ENST00000373644		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	CCAR1	chr10	70517134	+	TET1	chr10	70432652	+
intron-3CDS	ENST00000483264	ENST00000373644		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	CCAR1	chr10	70517134	+	TET1	chr10	70432652	+
Frame-shit	ENST00000278935	ENST00000324225		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
5CDS-intron	ENST00000278935	ENST00000431081		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
5CDS-intron	ENST00000278935	ENST00000530948		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
5CDS-intron	ENST00000278935	ENST00000532062		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
3UTR-3CDS	ENST00000533706	ENST00000324225		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
3UTR-intron	ENST00000533706	ENST00000431081		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
3UTR-intron	ENST00000533706	ENST00000530948		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
3UTR-intron	ENST00000533706	ENST00000532062		TCGA	RV	UCEC	TCGA-5B-A90C-01A	CEP164	chr11	117253658	+	SIDT2	chr11	117059424	+
Frame-shit	ENST00000323786	ENST00000261776		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
5CDS-intron	ENST00000323786	ENST00000571759		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
5CDS-intron	ENST00000323786	ENST00000536184		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
intron-3CDS	ENST00000393612	ENST00000261776		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
intron-intron	ENST00000393612	ENST00000571759		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
intron-intron	ENST00000393612	ENST00000536184		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
intron-3CDS	ENST00000564653	ENST00000261776		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
intron-intron	ENST00000564653	ENST00000571759		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
intron-intron	ENST00000564653	ENST00000536184		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	COG4	chr16	70524233	-	VAC14	chr16	70806075	-
Frame-shit	ENST00000440973	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
Frame-shit	ENST00000338799	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
Frame-shit	ENST00000456483	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
Frame-shit	ENST00000443427	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
Frame-shit	ENST00000206249	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
Frame-shit	ENST00000406599	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
intron-3CDS	ENST00000427531	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
intron-3CDS	ENST00000482101	ENST00000308191		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ESR1	chr6	152129499	+	PDE7B	chr6	136429869	+
In-frame	ENST00000369250	ENST00000296043		TCGA	RV	UCEC	TCGA-AP-A3K1-01A	FAM160B1	chr10	116596005	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000369250	ENST00000473602		TCGA	RV	UCEC	TCGA-AP-A3K1-01A	FAM160B1	chr10	116596005	+	SHROOM3	chr4	77476762	+
In-frame	ENST00000369248	ENST00000296043		TCGA	RV	UCEC	TCGA-AP-A3K1-01A	FAM160B1	chr10	116596005	+	SHROOM3	chr4	77476762	+
5CDS-intron	ENST00000369248	ENST00000473602		TCGA	RV	UCEC	TCGA-AP-A3K1-01A	FAM160B1	chr10	116596005	+	SHROOM3	chr4	77476762	+
intron-3CDS	ENST00000369246	ENST00000296043		TCGA	RV	UCEC	TCGA-AP-A3K1-01A	FAM160B1	chr10	116596005	+	SHROOM3	chr4	77476762	+
intron-intron	ENST00000369246	ENST00000473602		TCGA	RV	UCEC	TCGA-AP-A3K1-01A	FAM160B1	chr10	116596005	+	SHROOM3	chr4	77476762	+
5UTR-intron	ENST00000064778	ENST00000540363		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000064778	ENST00000331597		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000064778	ENST00000427714		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000450446	ENST00000540363		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000450446	ENST00000331597		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000450446	ENST00000427714		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000356467	ENST00000540363		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000356467	ENST00000331597		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-intron	ENST00000356467	ENST00000427714		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	FAM168A	chr11	73308968	-	P4HA3	chr11	74000175	-
5UTR-3CDS	ENST00000064778	ENST00000310653		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000064778	ENST00000336083		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000064778	ENST00000536566		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000064778	ENST00000541588		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000450446	ENST00000310653		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000450446	ENST00000336083		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000450446	ENST00000536566		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000450446	ENST00000541588		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000356467	ENST00000310653		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000356467	ENST00000336083		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000356467	ENST00000536566		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
5UTR-3CDS	ENST00000356467	ENST00000541588		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FAM168A	chr11	73308968	-	RAB6A	chr11	73431944	-
intron-3CDS	ENST00000311172	ENST00000064778		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000311172	ENST00000450446		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000311172	ENST00000356467		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409314	ENST00000064778		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409314	ENST00000450446		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409314	ENST00000356467		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409418	ENST00000064778		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409418	ENST00000450446		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
Frame-shit	ENST00000409418	ENST00000356467		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000458644	ENST00000064778		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000458644	ENST00000450446		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000458644	ENST00000356467		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000409853	ENST00000064778		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000409853	ENST00000450446		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5UTR-3CDS	ENST00000409853	ENST00000356467		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000409263	ENST00000064778		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000409263	ENST00000450446		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
intron-3CDS	ENST00000409263	ENST00000356467		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	FCHSD2	chr11	72851076	-	FAM168A	chr11	73131044	-
5CDS-intron	ENST00000180166	ENST00000220676		TCGA	RV	UCEC	TCGA-AJ-A3BH-01A	FGF20	chr8	16853164	-	RP1	chr8	55651503	+
5UTR-3CDS	ENST00000415807	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
5UTR-intron	ENST00000415807	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-3CDS	ENST00000336824	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-intron	ENST00000336824	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-3CDS	ENST00000416957	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-intron	ENST00000416957	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
5UTR-3CDS	ENST00000392699	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
5UTR-intron	ENST00000392699	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
5UTR-3CDS	ENST00000421757	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
5UTR-intron	ENST00000421757	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-3CDS	ENST00000423424	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-intron	ENST00000423424	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-3CDS	ENST00000476794	ENST00000334567		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
intron-intron	ENST00000476794	ENST00000469981		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	FNDC3B	chr3	171757561	+	TMEM212	chr3	171571317	+
Frame-shit	ENST00000361937	ENST00000314992		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
Frame-shit	ENST00000361937	ENST00000458580		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
5CDS-intron	ENST00000361937	ENST00000559743		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
Frame-shit	ENST00000401393	ENST00000314992		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
Frame-shit	ENST00000401393	ENST00000458580		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
5CDS-intron	ENST00000401393	ENST00000559743		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
5UTR-3CDS	ENST00000561244	ENST00000314992		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
5UTR-3CDS	ENST00000561244	ENST00000458580		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
5UTR-intron	ENST00000561244	ENST00000559743		TCGA	RV	UCEC	TCGA-BK-A139-02A	INO80	chr15	41279289	-	EXD1	chr15	41488235	-
5CDS-5UTR	ENST00000262457	ENST00000223129		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000262457	ENST00000406109		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000262457	ENST00000396682		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000262457	ENST00000401447		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5UTR-5UTR	ENST00000541287	ENST00000223129		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5UTR-intron	ENST00000541287	ENST00000406109		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5UTR-intron	ENST00000541287	ENST00000396682		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5UTR-intron	ENST00000541287	ENST00000401447		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-5UTR	ENST00000262456	ENST00000223129		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000262456	ENST00000406109		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000262456	ENST00000396682		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000262456	ENST00000401447		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-5UTR	ENST00000374921	ENST00000223129		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000374921	ENST00000406109		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000374921	ENST00000396682		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
5CDS-intron	ENST00000374921	ENST00000401447		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
3UTR-5UTR	ENST00000460636	ENST00000223129		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
3UTR-intron	ENST00000460636	ENST00000406109		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
3UTR-intron	ENST00000460636	ENST00000396682		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
3UTR-intron	ENST00000460636	ENST00000401447		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	INVS	chr9	102888831	+	RPA3	chr7	7680806	-
intron-intron	ENST00000477496	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000477496	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000477496	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000477496	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000477496	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000477496	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000460856	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000460856	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000460856	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000460856	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000460856	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000460856	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000240874	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000240874	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000240874	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000240874	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000240874	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000240874	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000360013	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000360013	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000360013	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000360013	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000360013	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000360013	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000393496	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000393496	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000393496	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000393496	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000393496	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000393496	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000291478	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000291478	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000291478	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000291478	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000291478	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000291478	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000428018	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000428018	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-5UTR	ENST00000428018	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000428018	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000428018	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
5CDS-intron	ENST00000428018	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000459915	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000459915	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000459915	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000459915	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000459915	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000459915	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000462213	ENST00000396299		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000462213	ENST00000357727		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-5UTR	ENST00000462213	ENST00000396300		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000462213	ENST00000409603		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000462213	ENST00000396298		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
intron-intron	ENST00000462213	ENST00000482692		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	KALRN	chr3	124352800	+	CREB5	chr7	28527793	+
In-frame	ENST00000367278	ENST00000367302		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000367278	ENST00000367296		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000367278	ENST00000295624		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000367278	ENST00000367297		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000367278	ENST00000367300		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000367278	ENST00000367295		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
5CDS-intron	ENST00000367278	ENST00000469130		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000255432	ENST00000367302		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000255432	ENST00000367296		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000255432	ENST00000295624		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000255432	ENST00000367297		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000255432	ENST00000367300		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000255432	ENST00000367295		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
5CDS-intron	ENST00000255432	ENST00000469130		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000439764	ENST00000367302		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000439764	ENST00000367296		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000439764	ENST00000295624		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000439764	ENST00000367297		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000439764	ENST00000367300		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
In-frame	ENST00000439764	ENST00000367295		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
5CDS-intron	ENST00000439764	ENST00000469130		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-3CDS	ENST00000308543	ENST00000367302		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-3CDS	ENST00000308543	ENST00000367296		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-3CDS	ENST00000308543	ENST00000295624		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-3CDS	ENST00000308543	ENST00000367297		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-3CDS	ENST00000308543	ENST00000367300		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-3CDS	ENST00000308543	ENST00000367295		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
intron-intron	ENST00000308543	ENST00000469130		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LGR6	chr1	202205121	+	NAV1	chr1	201749549	+
5CDS-5UTR	ENST00000545844	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000545844	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000545844	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000545844	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000567887	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000567887	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000567887	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000567887	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000372915	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000372915	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000372915	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000372915	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000361689	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000361689	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000361689	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000361689	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000539005	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000539005	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000539005	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000539005	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317713	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317713	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317713	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000317713	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000564288	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000564288	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000564288	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000564288	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000289893	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000289893	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000289893	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000289893	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000536367	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000536367	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000536367	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
5CDS-5UTR	ENST00000536367	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000484793	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000484793	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000484793	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000484793	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000602421	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000602421	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000602421	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000602421	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000476350	ENST00000225983		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000476350	ENST00000393622		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000476350	ENST00000336057		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
intron-5UTR	ENST00000476350	ENST00000586802		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	MACF1	chr1	39723700	+	HDAC5	chr17	42195072	-
Frame-shit	ENST00000383737	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000383737	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000383737	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000383737	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000383737	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000383737	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000395734	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000395734	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000395734	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000395734	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000395734	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000395734	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000426837	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000426837	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000426837	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000426837	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000426837	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000426837	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000360240	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000360240	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000360240	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000360240	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000360240	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000360240	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000439356	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000439356	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000439356	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000439356	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000439356	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000439356	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000264724	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000264724	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000264724	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000264724	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000264724	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000264724	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000420772	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000420772	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000420772	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000420772	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000420772	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000420772	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000441748	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000441748	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000441748	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000441748	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000441748	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000441748	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000462206	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000462206	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-3CDS	ENST00000462206	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000462206	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000462206	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
intron-intron	ENST00000462206	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000434267	ENST00000296440		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000434267	ENST00000358459		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
Frame-shit	ENST00000434267	ENST00000358536		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000434267	ENST00000448774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000434267	ENST00000456774		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-intron	ENST00000434267	ENST00000465117		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MAP4	chr3	48019355	-	PLXNB1	chr3	48457168	-
5CDS-3UTR	ENST00000250894	ENST00000569256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000250894	ENST00000248098		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000250894	ENST00000562684		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000250894	ENST00000561516		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000250894	ENST00000382711		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000250894	ENST00000569765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000250894	ENST00000382710		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000569256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000248098		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000562684		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000561516		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000382711		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000569765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5CDS-3UTR	ENST00000356010	ENST00000382710		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000569256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000248098		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000562684		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000561516		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000382711		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000569765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
intron-3UTR	ENST00000568271	ENST00000382710		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	MAPK8IP3	chr16	1756658	+	HN1L	chr16	1747813	+
5UTR-3CDS	ENST00000375571	ENST00000375749		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MAPRE1	chr20	31407834	+	POFUT1	chr20	30803072	+
5UTR-3CDS	ENST00000375571	ENST00000375730		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MAPRE1	chr20	31407834	+	POFUT1	chr20	30803072	+
5UTR-intron	ENST00000375571	ENST00000539210		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MAPRE1	chr20	31407834	+	POFUT1	chr20	30803072	+
5UTR-3UTR	ENST00000375571	ENST00000486717		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MAPRE1	chr20	31407834	+	POFUT1	chr20	30803072	+
Frame-shit	ENST00000343411	ENST00000341529		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	MBTPS1	chr16	84096910	-	CDH5	chr16	66422227	+
Frame-shit	ENST00000343411	ENST00000563425		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	MBTPS1	chr16	84096910	-	CDH5	chr16	66422227	+
5CDS-intron	ENST00000343411	ENST00000539168		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	MBTPS1	chr16	84096910	-	CDH5	chr16	66422227	+
intron-3CDS	ENST00000569770	ENST00000341529		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	MBTPS1	chr16	84096910	-	CDH5	chr16	66422227	+
intron-3CDS	ENST00000569770	ENST00000563425		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	MBTPS1	chr16	84096910	-	CDH5	chr16	66422227	+
intron-intron	ENST00000569770	ENST00000539168		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	MBTPS1	chr16	84096910	-	CDH5	chr16	66422227	+
In-frame	ENST00000441750	ENST00000402538		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
Frame-shit	ENST00000441750	ENST00000403687		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
Frame-shit	ENST00000441750	ENST00000407811		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
5CDS-intron	ENST00000441750	ENST00000482731		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
In-frame	ENST00000281513	ENST00000402538		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
Frame-shit	ENST00000281513	ENST00000403687		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
Frame-shit	ENST00000281513	ENST00000407811		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
5CDS-intron	ENST00000281513	ENST00000482731		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	NBAS	chr2	15415608	-	RASGRP3	chr2	33787796	+
5CDS-intron	ENST00000356175	ENST00000583688		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000356175	ENST00000330889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000356175	ENST00000580525		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000358273	ENST00000583688		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000358273	ENST00000330889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000358273	ENST00000580525		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000431387	ENST00000583688		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000431387	ENST00000330889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000431387	ENST00000580525		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000581113	ENST00000583688		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000581113	ENST00000330889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000581113	ENST00000580525		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000417592	ENST00000583688		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000417592	ENST00000330889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000417592	ENST00000580525		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000444181	ENST00000583688		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000444181	ENST00000330889		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
intron-intron	ENST00000444181	ENST00000580525		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NF1	chr17	29422387	+	ADAP2	chr17	29271925	+
In-frame	ENST00000379540	ENST00000379725		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000379540	ENST00000379723		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000379540	ENST00000379721		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000379521	ENST00000379725		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000379521	ENST00000379723		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000379521	ENST00000379721		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000318524	ENST00000379725		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000318524	ENST00000379723		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
In-frame	ENST00000318524	ENST00000379721		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000463421	ENST00000379725		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000463421	ENST00000379723		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
intron-3CDS	ENST00000463421	ENST00000379721		TCGA	RV	UCEC	TCGA-PG-A915-01A	NFX1	chr9	33344186	+	SPINK4	chr9	33245110	+
Frame-shit	ENST00000243346	ENST00000295269		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	NMI	chr2	152138462	-	SLC9A4	chr2	103125306	+
5CDS-intron	ENST00000263388	ENST00000263377		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	NOTCH3	chr19	15299800	-	BRD4	chr19	15360101	-
5CDS-intron	ENST00000263388	ENST00000371835		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	NOTCH3	chr19	15299800	-	BRD4	chr19	15360101	-
5CDS-intron	ENST00000263388	ENST00000360016		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	NOTCH3	chr19	15299800	-	BRD4	chr19	15360101	-
5CDS-intron	ENST00000263388	ENST00000602230		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	NOTCH3	chr19	15299800	-	BRD4	chr19	15360101	-
5UTR-3CDS	ENST00000360540	ENST00000276480		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-intron	ENST00000360540	ENST00000522102		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
Frame-shit	ENST00000544451	ENST00000276480		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5CDS-intron	ENST00000544451	ENST00000522102		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-3CDS	ENST00000519559	ENST00000276480		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-intron	ENST00000519559	ENST00000522102		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-3CDS	ENST00000522514	ENST00000276480		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-intron	ENST00000522514	ENST00000522102		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-3CDS	ENST00000521344	ENST00000276480		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
5UTR-intron	ENST00000521344	ENST00000522102		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	PCMTD1	chr8	52811490	-	ST18	chr8	53085143	-
Frame-shit	ENST00000356607	ENST00000358432		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	PEX14	chr1	10555378	+	EPHA2	chr1	16458934	-
5CDS-intron	ENST00000356607	ENST00000461614		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	PEX14	chr1	10555378	+	EPHA2	chr1	16458934	-
5UTR-3CDS	ENST00000538836	ENST00000358432		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	PEX14	chr1	10555378	+	EPHA2	chr1	16458934	-
5UTR-intron	ENST00000538836	ENST00000461614		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	PEX14	chr1	10555378	+	EPHA2	chr1	16458934	-
intron-3CDS	ENST00000492696	ENST00000358432		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	PEX14	chr1	10555378	+	EPHA2	chr1	16458934	-
intron-intron	ENST00000492696	ENST00000461614		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	PEX14	chr1	10555378	+	EPHA2	chr1	16458934	-
5CDS-5UTR	ENST00000262043	ENST00000414305		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000262043	ENST00000543135		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000262043	ENST00000427148		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000262043	ENST00000357639		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000262043	ENST00000358229		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000262043	ENST00000470930		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-5UTR	ENST00000509330	ENST00000414305		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000509330	ENST00000543135		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000509330	ENST00000427148		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000509330	ENST00000357639		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000509330	ENST00000358229		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000509330	ENST00000470930		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-5UTR	ENST00000393387	ENST00000414305		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000393387	ENST00000543135		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000393387	ENST00000427148		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000393387	ENST00000357639		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000393387	ENST00000358229		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
5CDS-intron	ENST00000393387	ENST00000470930		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
intron-5UTR	ENST00000420043	ENST00000414305		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
intron-intron	ENST00000420043	ENST00000543135		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
intron-intron	ENST00000420043	ENST00000427148		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
intron-intron	ENST00000420043	ENST00000357639		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
intron-intron	ENST00000420043	ENST00000358229		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
intron-intron	ENST00000420043	ENST00000470930		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	PHF3	chr6	64356700	+	ENPP3	chr6	131958375	+
In-frame	ENST00000334005	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000334005	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000334005	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000334005	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000334005	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000334005	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000378473	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000378473	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378473	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000378473	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378473	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378473	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000278655	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000278655	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000278655	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000278655	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000278655	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000278655	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000414679	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000414679	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000414679	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000414679	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000414679	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000414679	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
3UTR-3CDS	ENST00000492632	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
3UTR-3CDS	ENST00000492632	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
3UTR-intron	ENST00000492632	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
3UTR-5UTR	ENST00000492632	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
3UTR-intron	ENST00000492632	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
3UTR-intron	ENST00000492632	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000378501	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000378501	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378501	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000378501	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378501	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378501	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000378493	ENST00000217246		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
In-frame	ENST00000378493	ENST00000310348		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378493	ENST00000464883		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-5UTR	ENST00000378493	ENST00000402914		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378493	ENST00000378058		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
5CDS-intron	ENST00000378493	ENST00000407045		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	PLCB4	chr20	9288545	+	MACROD2	chr20	15843390	+
intron-3CDS	ENST00000254066	ENST00000404816		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000254066	ENST00000354476		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000254066	ENST00000390003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000254066	ENST00000418533		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000254066	ENST00000402934		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000254066	ENST00000404525		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000254066	ENST00000407925		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000254066	ENST00000272273		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000254066	ENST00000498013		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000404816		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000354476		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000390003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000418533		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000402934		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000404525		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000394089	ENST00000407925		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-intron	ENST00000394089	ENST00000272273		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-intron	ENST00000394089	ENST00000498013		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000404816		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000354476		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000390003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000418533		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000402934		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000404525		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-3CDS	ENST00000425707	ENST00000407925		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-intron	ENST00000425707	ENST00000272273		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5UTR-intron	ENST00000425707	ENST00000498013		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000404816		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000354476		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000390003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000418533		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000402934		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000404525		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394086	ENST00000407925		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000394086	ENST00000272273		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000394086	ENST00000498013		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000404816		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000354476		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000390003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000418533		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000402934		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000404525		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000394081	ENST00000407925		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000394081	ENST00000272273		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000394081	ENST00000498013		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000404816		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000354476		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000390003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000418533		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000402934		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000404525		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-3CDS	ENST00000420042	ENST00000407925		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000420042	ENST00000272273		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
intron-intron	ENST00000420042	ENST00000498013		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	RARA	chr17	38474700	+	LTBP1	chr2	33447147	+
5CDS-3UTR	ENST00000270645	ENST00000596435		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5CDS-intron	ENST00000270645	ENST00000344019		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000270645	ENST00000597551		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000270645	ENST00000204637		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000270645	ENST00000600429		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5CDS-3UTR	ENST00000270645	ENST00000594009		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5CDS-intron	ENST00000270645	ENST00000595510		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000593644	ENST00000596435		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-intron	ENST00000593644	ENST00000344019		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000593644	ENST00000597551		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000593644	ENST00000204637		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000593644	ENST00000600429		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-3UTR	ENST00000593644	ENST00000594009		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
intron-intron	ENST00000593644	ENST00000595510		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	RCN3	chr19	50042436	+	FLT3LG	chr19	49989272	+
5UTR-3CDS	ENST00000254325	ENST00000215790		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
5UTR-3CDS	ENST00000254325	ENST00000403477		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
5UTR-5UTR	ENST00000254325	ENST00000403362		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
5UTR-5UTR	ENST00000254325	ENST00000490449		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
intron-3CDS	ENST00000586913	ENST00000215790		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
intron-3CDS	ENST00000586913	ENST00000403477		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
intron-5UTR	ENST00000586913	ENST00000403362		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
intron-5UTR	ENST00000586913	ENST00000490449		TCGA	RV	UCEC	TCGA-PG-A915-01A	RFX1	chr19	14116915	-	TBC1D10A	chr22	30700619	-
In-frame	ENST00000543385	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000543385	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000543385	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000543385	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000543385	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000543385	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000543385	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
In-frame	ENST00000336727	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000336727	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000336727	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000336727	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000336727	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000336727	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000336727	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
In-frame	ENST00000344733	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000344733	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000344733	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000344733	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000344733	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000344733	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000344733	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
In-frame	ENST00000382788	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000382788	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000382788	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000382788	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000382788	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000382788	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
5CDS-intron	ENST00000382788	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-3CDS	ENST00000306648	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000306648	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000306648	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000306648	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000306648	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000306648	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000306648	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-3CDS	ENST00000338806	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000338806	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000338806	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000338806	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000338806	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000338806	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000338806	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-3CDS	ENST00000508158	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000508158	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000508158	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000508158	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000508158	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000508158	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000508158	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-3CDS	ENST00000538395	ENST00000263666		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000538395	ENST00000466780		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000538395	ENST00000308537		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000538395	ENST00000462146		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000538395	ENST00000535920		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000538395	ENST00000479530		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
intron-intron	ENST00000538395	ENST00000466348		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS12	chr4	3319778	+	PDZRN3	chr3	73657835	-
In-frame	ENST00000535829	ENST00000330479		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
In-frame	ENST00000535829	ENST00000402868		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
5CDS-intron	ENST00000535829	ENST00000478781		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
In-frame	ENST00000357529	ENST00000330479		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
In-frame	ENST00000357529	ENST00000402868		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
5CDS-intron	ENST00000357529	ENST00000478781		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
3UTR-3CDS	ENST00000299673	ENST00000330479		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
3UTR-3CDS	ENST00000299673	ENST00000402868		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
3UTR-intron	ENST00000299673	ENST00000478781		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
In-frame	ENST00000538135	ENST00000330479		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
In-frame	ENST00000538135	ENST00000402868		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
5CDS-intron	ENST00000538135	ENST00000478781		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RIMKLB	chr12	8906689	+	SETD8	chr12	123873980	+
Frame-shit	ENST00000508628	ENST00000405093		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
Frame-shit	ENST00000508628	ENST00000356287		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-3CDS	ENST00000456466	ENST00000405093		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-3CDS	ENST00000456466	ENST00000356287		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
Frame-shit	ENST00000582970	ENST00000405093		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
Frame-shit	ENST00000582970	ENST00000356287		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-3CDS	ENST00000319921	ENST00000405093		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-3CDS	ENST00000319921	ENST00000356287		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
Frame-shit	ENST00000336301	ENST00000405093		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
Frame-shit	ENST00000336301	ENST00000356287		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-3CDS	ENST00000427003	ENST00000405093		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-3CDS	ENST00000427003	ENST00000356287		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	RNF213	chr17	78346534	+	MYH6	chr14	23851771	-
intron-5UTR	ENST00000367469	ENST00000357525		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SASH1	chr6	148664359	+	PLN	chr6	118879988	+
5CDS-5UTR	ENST00000367467	ENST00000357525		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SASH1	chr6	148664359	+	PLN	chr6	118879988	+
intron-5UTR	ENST00000470750	ENST00000357525		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SASH1	chr6	148664359	+	PLN	chr6	118879988	+
Frame-shit	ENST00000337002	ENST00000495893		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
Frame-shit	ENST00000337002	ENST00000494943		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
Frame-shit	ENST00000337002	ENST00000467570		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000337002	ENST00000474275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000337002	ENST00000497658		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000337002	ENST00000481639		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
Frame-shit	ENST00000480708	ENST00000495893		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
Frame-shit	ENST00000480708	ENST00000494943		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
Frame-shit	ENST00000480708	ENST00000467570		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000480708	ENST00000474275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000480708	ENST00000497658		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000480708	ENST00000481639		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
3UTR-3CDS	ENST00000470355	ENST00000495893		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
3UTR-3CDS	ENST00000470355	ENST00000494943		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
3UTR-3CDS	ENST00000470355	ENST00000467570		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
3UTR-intron	ENST00000470355	ENST00000474275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
3UTR-intron	ENST00000470355	ENST00000497658		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
3UTR-intron	ENST00000470355	ENST00000481639		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SEC62	chr3	169703653	+	PHC3	chr3	169840532	-
5CDS-intron	ENST00000372564	ENST00000592864		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372564	ENST00000360228		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372564	ENST00000573710		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372564	ENST00000574822		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372559	ENST00000592864		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372559	ENST00000360228		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372559	ENST00000573710		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372559	ENST00000574822		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372554	ENST00000592864		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372554	ENST00000360228		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372554	ENST00000573710		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000372554	ENST00000574822		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000417224	ENST00000592864		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000417224	ENST00000360228		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000417224	ENST00000573710		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000417224	ENST00000574822		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000416629	ENST00000592864		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000416629	ENST00000360228		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000416629	ENST00000573710		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
5CDS-intron	ENST00000416629	ENST00000574822		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	SH3GLB2	chr9	131790371	-	CACNA1A	chr19	13414698	-
In-frame	ENST00000394817	ENST00000353963		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
In-frame	ENST00000394817	ENST00000348729		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
5CDS-5UTR	ENST00000394817	ENST00000503919		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
Frame-shit	ENST00000265195	ENST00000353963		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
Frame-shit	ENST00000265195	ENST00000348729		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
5CDS-5UTR	ENST00000265195	ENST00000503919		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
Frame-shit	ENST00000509534	ENST00000353963		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
Frame-shit	ENST00000509534	ENST00000348729		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
5CDS-5UTR	ENST00000509534	ENST00000503919		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
intron-3CDS	ENST00000515008	ENST00000353963		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
intron-3CDS	ENST00000515008	ENST00000348729		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
intron-5UTR	ENST00000515008	ENST00000503919		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SIL1	chr5	138456724	-	SLC23A1	chr5	138716575	-
Frame-shit	ENST00000264930	ENST00000310581		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	SLC12A7	chr5	1060459	-	TERT	chr5	1282739	-
In-frame	ENST00000264930	ENST00000296820		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	SLC12A7	chr5	1060459	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264930	ENST00000334602		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	SLC12A7	chr5	1060459	-	TERT	chr5	1282739	-
Frame-shit	ENST00000264930	ENST00000508104		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	SLC12A7	chr5	1060459	-	TERT	chr5	1282739	-
5CDS-intron	ENST00000264930	ENST00000522877		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	SLC12A7	chr5	1060459	-	TERT	chr5	1282739	-
5UTR-3CDS	ENST00000359511	ENST00000257017		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SLC25A44	chr1	156164038	+	RAB33A	chrX	129318259	+
5UTR-3CDS	ENST00000423538	ENST00000257017		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SLC25A44	chr1	156164038	+	RAB33A	chrX	129318259	+
intron-3CDS	ENST00000469537	ENST00000257017		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SLC25A44	chr1	156164038	+	RAB33A	chrX	129318259	+
5UTR-3CDS	ENST00000359511	ENST00000355014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368285		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368286		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000359511	ENST00000368282		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3UTR	ENST00000359511	ENST00000487358		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000355014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368285		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368286		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3CDS	ENST00000423538	ENST00000368282		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
5UTR-3UTR	ENST00000423538	ENST00000487358		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000355014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368285		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368286		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3CDS	ENST00000469537	ENST00000368282		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
intron-3UTR	ENST00000469537	ENST00000487358		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SLC25A44	chr1	156164038	+	SEMA4A	chr1	156142617	+
In-frame	ENST00000454355	ENST00000257951		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SLC39A5	chr12	56626656	+	KRT84	chr12	52774367	-
In-frame	ENST00000266980	ENST00000257951		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SLC39A5	chr12	56626656	+	KRT84	chr12	52774367	-
intron-3CDS	ENST00000419232	ENST00000257951		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	SLC39A5	chr12	56626656	+	KRT84	chr12	52774367	-
Frame-shit	ENST00000554684	ENST00000267620		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554684	ENST00000342058		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554684	ENST00000556154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000554684	ENST00000556961		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000428424	ENST00000267620		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000428424	ENST00000342058		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000428424	ENST00000556154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000428424	ENST00000556961		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000337238	ENST00000267620		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000337238	ENST00000342058		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000337238	ENST00000556154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000337238	ENST00000556961		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554943	ENST00000267620		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554943	ENST00000342058		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000554943	ENST00000556154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000554943	ENST00000556961		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000555462	ENST00000267620		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000555462	ENST00000342058		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000555462	ENST00000556154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
5CDS-intron	ENST00000555462	ENST00000556961		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555718	ENST00000267620		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555718	ENST00000342058		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-3CDS	ENST00000555718	ENST00000556154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
intron-intron	ENST00000555718	ENST00000556961		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SMEK1	chr14	91975850	-	FBLN5	chr14	92361416	-
Frame-shit	ENST00000383836	ENST00000287585		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000383836	ENST00000495730		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
Frame-shit	ENST00000360413	ENST00000287585		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
5CDS-intron	ENST00000360413	ENST00000495730		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
intron-3CDS	ENST00000433332	ENST00000287585		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
intron-intron	ENST00000433332	ENST00000495730		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	SRGAP3	chr3	9290569	-	LHFPL4	chr3	9547887	-
Frame-shit	ENST00000373824	ENST00000310653		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000373824	ENST00000336083		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000373824	ENST00000536566		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000373824	ENST00000541588		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000263974	ENST00000310653		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000263974	ENST00000336083		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000263974	ENST00000536566		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000263974	ENST00000541588		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000471683	ENST00000310653		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000471683	ENST00000336083		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000471683	ENST00000536566		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
5UTR-3CDS	ENST00000471683	ENST00000541588		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	TAF12	chr1	28939759	-	RAB6A	chr11	73390765	-
Frame-shit	ENST00000282111	ENST00000409785		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TCF7L1	chr2	85361573	+	KCMF1	chr2	85255012	+
3UTR-3CDS	ENST00000494519	ENST00000409785		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TCF7L1	chr2	85361573	+	KCMF1	chr2	85255012	+
intron-3CDS	ENST00000330266	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000330266	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000330266	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000330266	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
Frame-shit	ENST00000405975	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
Frame-shit	ENST00000405975	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5CDS-intron	ENST00000405975	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5CDS-intron	ENST00000405975	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
Frame-shit	ENST00000415080	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
Frame-shit	ENST00000415080	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5CDS-intron	ENST00000415080	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5CDS-intron	ENST00000415080	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
Frame-shit	ENST00000405006	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
Frame-shit	ENST00000405006	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5CDS-intron	ENST00000405006	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5CDS-intron	ENST00000405006	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000485353	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000485353	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000485353	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000485353	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000402360	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000402360	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000402360	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000402360	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000404790	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000404790	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000404790	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000404790	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000403856	ENST00000372899		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-3CDS	ENST00000403856	ENST00000372901		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000403856	ENST00000372883		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
intron-intron	ENST00000403856	ENST00000372903		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	THADA	chr2	43547585	-	UBR2	chr6	42582809	+
5UTR-3CDS	ENST00000378308	ENST00000368034		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000378308	ENST00000368033		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000378308	ENST00000322302		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000378308	ENST00000368032		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-5UTR	ENST00000378308	ENST00000481677		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000324545	ENST00000368034		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000324545	ENST00000368033		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000324545	ENST00000322302		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-3CDS	ENST00000324545	ENST00000368032		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
5UTR-5UTR	ENST00000324545	ENST00000481677		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	USP9X	chrX	40945362	+	CD244	chr1	160808839	-
Frame-shit	ENST00000375169	ENST00000375135		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	WNK3	chrX	54359570	-	FGD1	chrX	54497920	-
Frame-shit	ENST00000354646	ENST00000375135		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	WNK3	chrX	54359570	-	FGD1	chrX	54497920	-
Frame-shit	ENST00000375159	ENST00000375135		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	WNK3	chrX	54359570	-	FGD1	chrX	54497920	-
In-frame	ENST00000396516	ENST00000434724		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
In-frame	ENST00000396516	ENST00000439887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
In-frame	ENST00000396516	ENST00000563468		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
In-frame	ENST00000396516	ENST00000420576		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
5CDS-5UTR	ENST00000396516	ENST00000564790		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000434724		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000439887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000563468		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000355758	ENST00000420576		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
5CDS-5UTR	ENST00000355758	ENST00000564790		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000434724		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000439887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000563468		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575984	ENST00000420576		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-5UTR	ENST00000575984	ENST00000564790		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000434724		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000439887		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000563468		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-3CDS	ENST00000575170	ENST00000420576		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
intron-5UTR	ENST00000575170	ENST00000564790		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	ZC3H7A	chr16	11856527	-	GSPT1	chr16	11976952	-
Frame-shit	ENST00000536306	ENST00000331738		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-5UTR	ENST00000536306	ENST00000354654		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-intron	ENST00000536306	ENST00000392442		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
Frame-shit	ENST00000543897	ENST00000331738		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-5UTR	ENST00000543897	ENST00000354654		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-intron	ENST00000543897	ENST00000392442		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-5UTR	ENST00000336229	ENST00000354654		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-intron	ENST00000336229	ENST00000392442		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
Frame-shit	ENST00000538116	ENST00000331738		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-5UTR	ENST00000538116	ENST00000354654		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-intron	ENST00000538116	ENST00000392442		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ZCCHC8	chr12	122962388	-	RSRC2	chr12	123006846	-
5CDS-5UTR	ENST00000326793	ENST00000347370		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000326793	ENST00000349431		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000326793	ENST00000339385		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000326793	ENST00000348298		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000326793	ENST00000400929		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000326793	ENST00000360466		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000326793	ENST00000400930		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000326793	ENST00000491779		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000472860	ENST00000347370		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000472860	ENST00000349431		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000472860	ENST00000339385		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000472860	ENST00000348298		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000472860	ENST00000400929		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000472860	ENST00000360466		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000472860	ENST00000400930		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000472860	ENST00000491779		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ACAP2	chr3	195101738	-	UBE2J2	chr1	1203372	-
In-frame	ENST00000216254	ENST00000517296		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
In-frame	ENST00000216254	ENST00000389773		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000216254	ENST00000389774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000216254	ENST00000336963		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000216254	ENST00000356099		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000216254	ENST00000469872		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
In-frame	ENST00000396512	ENST00000517296		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
In-frame	ENST00000396512	ENST00000389773		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000396512	ENST00000389774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000396512	ENST00000336963		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000396512	ENST00000356099		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
5CDS-intron	ENST00000396512	ENST00000469872		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
intron-3CDS	ENST00000466237	ENST00000517296		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
intron-3CDS	ENST00000466237	ENST00000389773		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
intron-intron	ENST00000466237	ENST00000389774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
intron-intron	ENST00000466237	ENST00000336963		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
intron-intron	ENST00000466237	ENST00000356099		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
intron-intron	ENST00000466237	ENST00000469872		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	ARHGAP8	chr22	45110471	+
In-frame	ENST00000398204	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398204	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398204	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5CDS-intron	ENST00000398204	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000439864	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000439864	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000439864	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5CDS-intron	ENST00000439864	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398201	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398201	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398201	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5CDS-intron	ENST00000398201	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000265727	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000265727	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000265727	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5CDS-intron	ENST00000265727	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000315984	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000315984	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000315984	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5CDS-intron	ENST00000315984	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398209	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398209	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
In-frame	ENST00000398209	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5CDS-intron	ENST00000398209	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
intron-3CDS	ENST00000476330	ENST00000338056		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
intron-3CDS	ENST00000476330	ENST00000493037		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
intron-3CDS	ENST00000476330	ENST00000394654		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
intron-intron	ENST00000476330	ENST00000496000		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	ADAM22	chr7	87607727	+	RUNDC3B	chr7	87445456	+
5UTR-5UTR	ENST00000446856	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000446856	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-3UTR	ENST00000446856	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000446856	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000446856	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-intron	ENST00000446856	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000264758	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000264758	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-3UTR	ENST00000264758	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000264758	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000264758	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-intron	ENST00000264758	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000398125	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000398125	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-3UTR	ENST00000398125	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000398125	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000398125	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-intron	ENST00000398125	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000513328	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000513328	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-3UTR	ENST00000513328	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000513328	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000513328	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-intron	ENST00000513328	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000503455	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000503455	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-3UTR	ENST00000503455	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000503455	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-5UTR	ENST00000503455	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
5UTR-intron	ENST00000503455	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000355842	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000355842	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-3UTR	ENST00000355842	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000355842	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000355842	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-intron	ENST00000355842	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398123	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398123	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-3UTR	ENST00000398123	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398123	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398123	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-intron	ENST00000398123	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398129	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398129	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-3UTR	ENST00000398129	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398129	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000398129	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-intron	ENST00000398129	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000538860	ENST00000362003		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000538860	ENST00000400151		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-3UTR	ENST00000538860	ENST00000482726		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000538860	ENST00000470161		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-5UTR	ENST00000538860	ENST00000521023		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
intron-intron	ENST00000538860	ENST00000505655		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ADD1	chr4	2845751	+	PCGF3	chr4	724419	+
In-frame	ENST00000389048	ENST00000324589		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
In-frame	ENST00000389048	ENST00000349752		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
In-frame	ENST00000389048	ENST00000406653		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
In-frame	ENST00000389048	ENST00000356174		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
In-frame	ENST00000389048	ENST00000420311		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5CDS-5UTR	ENST00000389048	ENST00000486564		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
intron-3CDS	ENST00000431873	ENST00000324589		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
intron-3CDS	ENST00000431873	ENST00000349752		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
intron-3CDS	ENST00000431873	ENST00000406653		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
intron-3CDS	ENST00000431873	ENST00000356174		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
intron-3CDS	ENST00000431873	ENST00000420311		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
intron-5UTR	ENST00000431873	ENST00000486564		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5UTR-3CDS	ENST00000498037	ENST00000324589		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5UTR-3CDS	ENST00000498037	ENST00000349752		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5UTR-3CDS	ENST00000498037	ENST00000406653		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5UTR-3CDS	ENST00000498037	ENST00000356174		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5UTR-3CDS	ENST00000498037	ENST00000420311		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5UTR-5UTR	ENST00000498037	ENST00000486564		TCGA	RV	UCEC	TCGA-A5-A2K2-01A	ALK	chr2	29519754	-	GALNT14	chr2	31152353	-
5CDS-5UTR	ENST00000396432	ENST00000376356		TCGA	RV	UCEC	TCGA-BK-A139-02A	ARHGAP21	chr10	25010766	-	THNSL1	chr10	25310671	+
5CDS-5UTR	ENST00000396432	ENST00000524413		TCGA	RV	UCEC	TCGA-BK-A139-02A	ARHGAP21	chr10	25010766	-	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000320481	ENST00000376356		TCGA	RV	UCEC	TCGA-BK-A139-02A	ARHGAP21	chr10	25010766	-	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000320481	ENST00000524413		TCGA	RV	UCEC	TCGA-BK-A139-02A	ARHGAP21	chr10	25010766	-	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000493154	ENST00000376356		TCGA	RV	UCEC	TCGA-BK-A139-02A	ARHGAP21	chr10	25010766	-	THNSL1	chr10	25310671	+
intron-5UTR	ENST00000493154	ENST00000524413		TCGA	RV	UCEC	TCGA-BK-A139-02A	ARHGAP21	chr10	25010766	-	THNSL1	chr10	25310671	+
Frame-shit	ENST00000375687	ENST00000253381		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ASXL1	chr20	30954269	+	DEFB118	chr20	29960660	+
Frame-shit	ENST00000542461	ENST00000253381		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ASXL1	chr20	30954269	+	DEFB118	chr20	29960660	+
Frame-shit	ENST00000375689	ENST00000253381		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ASXL1	chr20	30954269	+	DEFB118	chr20	29960660	+
Frame-shit	ENST00000306058	ENST00000253381		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ASXL1	chr20	30954269	+	DEFB118	chr20	29960660	+
3UTR-3CDS	ENST00000470145	ENST00000253381		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ASXL1	chr20	30954269	+	DEFB118	chr20	29960660	+
Frame-shit	ENST00000339594	ENST00000318130		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	BAZ1B	chr7	72861594	-	EDEM3	chr1	184706845	-
Frame-shit	ENST00000339594	ENST00000367512		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	BAZ1B	chr7	72861594	-	EDEM3	chr1	184706845	-
5CDS-intron	ENST00000339594	ENST00000466392		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	BAZ1B	chr7	72861594	-	EDEM3	chr1	184706845	-
Frame-shit	ENST00000404251	ENST00000318130		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	BAZ1B	chr7	72861594	-	EDEM3	chr1	184706845	-
Frame-shit	ENST00000404251	ENST00000367512		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	BAZ1B	chr7	72861594	-	EDEM3	chr1	184706845	-
5CDS-intron	ENST00000404251	ENST00000466392		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	BAZ1B	chr7	72861594	-	EDEM3	chr1	184706845	-
5UTR-3CDS	ENST00000379339	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000379339	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000379339	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-intron	ENST00000379339	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000448924	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000448924	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000448924	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-intron	ENST00000448924	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000294576	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000294576	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000294576	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-intron	ENST00000294576	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000421241	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000421241	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000421241	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-intron	ENST00000421241	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000482816	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000482816	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000482816	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-intron	ENST00000482816	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000437760	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000437760	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-3CDS	ENST00000437760	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5UTR-intron	ENST00000437760	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-3CDS	ENST00000379320	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-3CDS	ENST00000379320	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-3CDS	ENST00000379320	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-intron	ENST00000379320	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-3CDS	ENST00000379319	ENST00000360001		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-3CDS	ENST00000379319	ENST00000263741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-3CDS	ENST00000379319	ENST00000545427		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
intron-intron	ENST00000379319	ENST00000459994		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	C1orf159	chr1	1051440	-	SDF4	chr1	1159348	-
5CDS-intron	ENST00000545121	ENST00000413052		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000545121	ENST00000369645		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000545121	ENST00000544796		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-5UTR	ENST00000545121	ENST00000369644		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000545121	ENST00000468624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000545121	ENST00000357443		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000357172	ENST00000413052		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000357172	ENST00000369645		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000357172	ENST00000544796		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-5UTR	ENST00000357172	ENST00000369644		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000357172	ENST00000468624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5CDS-intron	ENST00000357172	ENST00000357443		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
intron-intron	ENST00000467362	ENST00000413052		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
intron-intron	ENST00000467362	ENST00000369645		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
intron-intron	ENST00000467362	ENST00000544796		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
intron-5UTR	ENST00000467362	ENST00000369644		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
intron-intron	ENST00000467362	ENST00000468624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
intron-intron	ENST00000467362	ENST00000357443		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113229588	+
5UTR-3CDS	ENST00000423902	ENST00000262646		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
5UTR-intron	ENST00000423902	ENST00000531289		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
5UTR-intron	ENST00000423902	ENST00000529579		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
5UTR-intron	ENST00000423902	ENST00000530071		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-3CDS	ENST00000524602	ENST00000262646		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000524602	ENST00000531289		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000524602	ENST00000529579		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000524602	ENST00000530071		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-3CDS	ENST00000525508	ENST00000262646		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000525508	ENST00000531289		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000525508	ENST00000529579		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000525508	ENST00000530071		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-3CDS	ENST00000529472	ENST00000262646		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000529472	ENST00000531289		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000529472	ENST00000529579		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
intron-intron	ENST00000529472	ENST00000530071		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	CHD7	chr8	61591641	+	RAB2A	chr8	61471411	+
Frame-shit	ENST00000546361	ENST00000537330		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000546361	ENST00000570891		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000546361	ENST00000306801		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000546361	ENST00000544334		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
5CDS-3UTR	ENST00000546361	ENST00000575542		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000198939	ENST00000537330		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000198939	ENST00000570891		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000198939	ENST00000306801		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
Frame-shit	ENST00000198939	ENST00000544334		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
5CDS-3UTR	ENST00000198939	ENST00000575542		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
intron-3CDS	ENST00000544299	ENST00000537330		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
intron-3CDS	ENST00000544299	ENST00000570891		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
intron-3CDS	ENST00000544299	ENST00000306801		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
intron-3CDS	ENST00000544299	ENST00000544334		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
intron-3UTR	ENST00000544299	ENST00000575542		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	CHERP	chr19	16640459	-	RPTOR	chr17	78727810	+
In-frame	ENST00000194900	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-02A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000370192	ENST00000302708		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-intron	ENST00000370192	ENST00000378840		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-intron	ENST00000370192	ENST00000532410		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
intron-3CDS	ENST00000474241	ENST00000302708		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
intron-intron	ENST00000474241	ENST00000378840		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
intron-intron	ENST00000474241	ENST00000532410		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
In-frame	ENST00000423006	ENST00000302708		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-intron	ENST00000423006	ENST00000378840		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-intron	ENST00000423006	ENST00000532410		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
In-frame	ENST00000306031	ENST00000302708		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-intron	ENST00000306031	ENST00000378840		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-intron	ENST00000306031	ENST00000532410		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	DPYD	chr1	98386440	-	ALKBH3	chr11	43923066	+
5CDS-5UTR	ENST00000367160	ENST00000476884		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367160	ENST00000367153		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367160	ENST00000367154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367160	ENST00000391936		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367160	ENST00000367149		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367160	ENST00000367151		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367160	ENST00000367152		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000476884		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000367153		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000367154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000391936		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000367149		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000367151		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367161	ENST00000367152		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000476884		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000367153		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000367154		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000391936		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000367149		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000367151		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
5CDS-5UTR	ENST00000367162	ENST00000367152		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	DSTYK	chr1	205180399	-	LEMD1	chr1	205389702	-
In-frame	ENST00000278505	ENST00000318312		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ENDOD1	chr11	94823391	+	BBS1	chr11	66288741	+
In-frame	ENST00000278505	ENST00000537537		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ENDOD1	chr11	94823391	+	BBS1	chr11	66288741	+
In-frame	ENST00000278505	ENST00000455748		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ENDOD1	chr11	94823391	+	BBS1	chr11	66288741	+
5CDS-3UTR	ENST00000278505	ENST00000529766		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ENDOD1	chr11	94823391	+	BBS1	chr11	66288741	+
5CDS-intron	ENST00000278505	ENST00000393994		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	ENDOD1	chr11	94823391	+	BBS1	chr11	66288741	+
5CDS-5UTR	ENST00000418814	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000418814	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000418814	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000370479	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000370479	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000370479	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000505769	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000505769	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000505769	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000457062	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000457062	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000457062	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000361499	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000361499	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000361499	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000505868	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-3UTR	ENST00000505868	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5CDS-5UTR	ENST00000505868	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
intron-5UTR	ENST00000508844	ENST00000349457		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
intron-3UTR	ENST00000508844	ENST00000394361		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
intron-5UTR	ENST00000508844	ENST00000340339		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM135A	chr6	71212494	+	GPR114	chr16	57595968	+
5UTR-intron	ENST00000519824	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000519824	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000519824	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000522746	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000522746	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000522746	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000523509	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000523509	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000523509	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000401979	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000401979	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000401979	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000519110	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000519110	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000519110	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
intron-intron	ENST00000522250	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
intron-5UTR	ENST00000522250	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
intron-5UTR	ENST00000522250	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000517654	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000517654	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000517654	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000519540	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000519540	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000519540	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000522941	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000522941	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000522941	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-intron	ENST00000518879	ENST00000497554		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000518879	ENST00000549489		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
5UTR-5UTR	ENST00000518879	ENST00000475668		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	FAM49B	chr8	130915558	-	MGAM	chr7	141705329	+
Frame-shit	ENST00000080059	ENST00000395324		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000080059	ENST00000229022		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000080059	ENST00000549336		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000080059	ENST00000550325		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000080059	ENST00000535672		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000354334	ENST00000395324		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000354334	ENST00000229022		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000354334	ENST00000549336		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000354334	ENST00000550325		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000354334	ENST00000535672		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000552960	ENST00000395324		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000552960	ENST00000229022		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000552960	ENST00000549336		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000552960	ENST00000550325		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
Frame-shit	ENST00000552960	ENST00000535672		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000380610	ENST00000395324		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000380610	ENST00000229022		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000380610	ENST00000549336		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000380610	ENST00000550325		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000380610	ENST00000535672		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000427332	ENST00000395324		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000427332	ENST00000229022		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000427332	ENST00000549336		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000427332	ENST00000550325		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
In-frame	ENST00000427332	ENST00000535672		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000488927	ENST00000395324		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000488927	ENST00000229022		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000488927	ENST00000549336		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000488927	ENST00000550325		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
intron-3CDS	ENST00000488927	ENST00000535672		TCGA	RV	UCEC	TCGA-EY-A54A-01A	HDAC7	chr12	48191167	-	VDR	chr12	48240591	-
5CDS-3UTR	ENST00000371721	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000371721	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000371721	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000277874	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000277874	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000277874	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000336152	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000336152	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000336152	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000371719	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-3UTR	ENST00000371719	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-intron	ENST00000371719	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	HTR7	chr10	92616890	-	C10orf11	chr10	77795766	+
5CDS-5UTR	ENST00000350082	ENST00000306858		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	ICK	chr6	52883128	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000356971	ENST00000306858		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	ICK	chr6	52883128	-	FAM83B	chr6	54734985	+
5CDS-5UTR	ENST00000268182	ENST00000379122		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
5CDS-5UTR	ENST00000268182	ENST00000332496		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
5CDS-intron	ENST00000268182	ENST00000560263		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
5CDS-5UTR	ENST00000268182	ENST00000411539		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-5UTR	ENST00000560738	ENST00000379122		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-5UTR	ENST00000560738	ENST00000332496		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-intron	ENST00000560738	ENST00000560263		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-5UTR	ENST00000560738	ENST00000411539		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-5UTR	ENST00000560020	ENST00000379122		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-5UTR	ENST00000560020	ENST00000332496		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-intron	ENST00000560020	ENST00000560263		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
intron-5UTR	ENST00000560020	ENST00000411539		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	IQGAP1	chr15	90934105	+	SEMA4B	chr15	90744690	+
5CDS-intron	ENST00000325722	ENST00000264211		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-5UTR	ENST00000325722	ENST00000400422		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-5UTR	ENST00000325722	ENST00000602326		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-intron	ENST00000325722	ENST00000374935		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-intron	ENST00000325722	ENST00000374937		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-intron	ENST00000325722	ENST00000536266		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-intron	ENST00000325722	ENST00000374933		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-intron	ENST00000325722	ENST00000544689		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-5UTR	ENST00000325722	ENST00000356916		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-5UTR	ENST00000325722	ENST00000374927		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
5CDS-intron	ENST00000325722	ENST00000537738		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000264211		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000373266	ENST00000400422		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000373266	ENST00000602326		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000374935		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000374937		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000536266		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000374933		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000544689		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000373266	ENST00000356916		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000373266	ENST00000374927		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000373266	ENST00000537738		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000264211		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000485551	ENST00000400422		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000485551	ENST00000602326		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000374935		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000374937		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000536266		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000374933		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000544689		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000485551	ENST00000356916		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-5UTR	ENST00000485551	ENST00000374927		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
intron-intron	ENST00000485551	ENST00000537738		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	KIAA0319L	chr1	36019951	-	EIF4G3	chr1	21415706	-
Frame-shit	ENST00000356554	ENST00000369466		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	MAN1A2	chr1	117957453	+	TTF2	chr1	117629039	+
5CDS-intron	ENST00000356554	ENST00000480701		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	MAN1A2	chr1	117957453	+	TTF2	chr1	117629039	+
3UTR-3CDS	ENST00000482811	ENST00000369466		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	MAN1A2	chr1	117957453	+	TTF2	chr1	117629039	+
3UTR-intron	ENST00000482811	ENST00000480701		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	MAN1A2	chr1	117957453	+	TTF2	chr1	117629039	+
intron-3CDS	ENST00000382582	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000382582	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000382582	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000382582	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000382582	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000355994	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000355994	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000355994	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000355994	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5CDS-5UTR	ENST00000355994	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397875	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397875	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397875	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397875	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000397875	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397866	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397866	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397866	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397866	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000397866	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397865	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397865	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397865	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397865	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000397865	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000527041	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000527041	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000527041	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000527041	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000527041	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000359645	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000359645	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000359645	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000359645	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000359645	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000528160	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000528160	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000528160	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000528160	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000528160	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397869	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397869	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397869	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000397869	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000397869	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000354542	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000354542	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000354542	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000354542	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000354542	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000526111	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000526111	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000526111	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000526111	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000526111	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
In-frame	ENST00000580402	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
In-frame	ENST00000580402	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
In-frame	ENST00000580402	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
In-frame	ENST00000580402	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5CDS-5UTR	ENST00000580402	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000579129	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000579129	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000579129	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000579129	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5CDS-5UTR	ENST00000579129	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000578193	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000578193	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000578193	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-3CDS	ENST00000578193	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
intron-5UTR	ENST00000578193	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397863	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397863	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397863	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397863	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5CDS-5UTR	ENST00000397863	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397860	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397860	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397860	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
Frame-shit	ENST00000397860	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5CDS-5UTR	ENST00000397860	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5UTR-3CDS	ENST00000487778	ENST00000581073		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5UTR-3CDS	ENST00000487778	ENST00000585159		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5UTR-3CDS	ENST00000487778	ENST00000269503		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5UTR-3CDS	ENST00000487778	ENST00000584764		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5UTR-5UTR	ENST00000487778	ENST00000583651		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70206007	-
5UTR-3CDS	ENST00000369981	ENST00000370010		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369981	ENST00000370014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369981	ENST00000447266		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3UTR	ENST00000369981	ENST00000541192		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-intron	ENST00000369981	ENST00000327284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-intron	ENST00000369981	ENST00000436928		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369985	ENST00000370010		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369985	ENST00000370014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369985	ENST00000447266		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3UTR	ENST00000369985	ENST00000541192		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-intron	ENST00000369985	ENST00000327284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-intron	ENST00000369985	ENST00000436928		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369977	ENST00000370010		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369977	ENST00000370014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000369977	ENST00000447266		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3UTR	ENST00000369977	ENST00000541192		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-intron	ENST00000369977	ENST00000327284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-intron	ENST00000369977	ENST00000436928		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3CDS	ENST00000369975	ENST00000370010		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3CDS	ENST00000369975	ENST00000370014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3CDS	ENST00000369975	ENST00000447266		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3UTR	ENST00000369975	ENST00000541192		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-intron	ENST00000369975	ENST00000327284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-intron	ENST00000369975	ENST00000436928		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-3UTR	ENST00000462633	ENST00000541192		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-intron	ENST00000462633	ENST00000327284		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MYO6	chr6	76459140	+	SENP6	chr6	76423229	+
5UTR-3CDS	ENST00000341724	ENST00000375471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000341724	ENST00000537499		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000341724	ENST00000413717		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000341724	ENST00000536552		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000341724	ENST00000460293		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-3CDS	ENST00000372004	ENST00000375471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000372004	ENST00000537499		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000372004	ENST00000413717		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000372004	ENST00000536552		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000372004	ENST00000460293		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-3CDS	ENST00000371998	ENST00000375471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371998	ENST00000537499		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371998	ENST00000413717		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371998	ENST00000536552		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371998	ENST00000460293		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-3CDS	ENST00000371997	ENST00000375471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371997	ENST00000537499		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371997	ENST00000413717		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371997	ENST00000536552		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000371997	ENST00000460293		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
intron-3CDS	ENST00000497292	ENST00000375471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
intron-intron	ENST00000497292	ENST00000537499		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
intron-intron	ENST00000497292	ENST00000413717		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
intron-intron	ENST00000497292	ENST00000536552		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
intron-intron	ENST00000497292	ENST00000460293		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NCOA3	chr20	46130763	+	PADI1	chr1	17548785	+
5UTR-intron	ENST00000282516	ENST00000282469		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000282516	ENST00000509059		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000282516	ENST00000356031		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000282516	ENST00000440995		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000282516	ENST00000303129		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000448238	ENST00000282469		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000448238	ENST00000509059		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000448238	ENST00000356031		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000448238	ENST00000440995		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5UTR-intron	ENST00000448238	ENST00000303129		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000282469		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000509059		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000356031		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000440995		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
intron-intron	ENST00000504430	ENST00000303129		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35753726	+
5CDS-5UTR	ENST00000321265	ENST00000295591		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	NUDC	chr1	27250657	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000321265	ENST00000335211		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	NUDC	chr1	27250657	+	IGFN1	chr1	201162375	+
5CDS-5UTR	ENST00000321265	ENST00000451870		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	NUDC	chr1	27250657	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000484772	ENST00000295591		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	NUDC	chr1	27250657	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000484772	ENST00000335211		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	NUDC	chr1	27250657	+	IGFN1	chr1	201162375	+
intron-5UTR	ENST00000484772	ENST00000451870		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	NUDC	chr1	27250657	+	IGFN1	chr1	201162375	+
5UTR-3CDS	ENST00000554546	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000554546	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000554546	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000554546	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000356296	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000356296	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000356296	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000356296	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000557597	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000557597	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000557597	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000557597	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000555238	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000555238	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000555238	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000555238	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000355058	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000355058	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000355058	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000355058	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000359560	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000359560	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000359560	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000359560	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000555394	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000555394	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000555394	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000555394	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000454166	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000454166	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000454166	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000454166	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000544991	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000544991	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000544991	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000544991	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000560335	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000560335	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000560335	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000560335	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000555738	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000555738	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000555738	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000555738	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000559312	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000559312	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000559312	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000559312	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000554521	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000554521	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000554521	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000554521	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000535282	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000535282	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000535282	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000535282	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000556600	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-3CDS	ENST00000556600	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000556600	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5UTR-5UTR	ENST00000556600	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000556772	ENST00000553558		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-3CDS	ENST00000556772	ENST00000334988		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000556772	ENST00000566478		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
intron-5UTR	ENST00000556772	ENST00000560393		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	NUMB	chr14	73876645	-	HEATR4	chr14	73945547	-
5CDS-5UTR	ENST00000487257	ENST00000303592		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	PDE12	chr3	57545115	+	KCNJ4	chr22	38824176	-
5CDS-5UTR	ENST00000311180	ENST00000303592		TCGA	RV	UCEC	TCGA-AX-A3G1-01A	PDE12	chr3	57545115	+	KCNJ4	chr22	38824176	-
In-frame	ENST00000219207	ENST00000564448		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
In-frame	ENST00000219207	ENST00000251102		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
5CDS-intron	ENST00000219207	ENST00000564654		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
5CDS-intron	ENST00000219207	ENST00000311183		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
In-frame	ENST00000569059	ENST00000564448		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
In-frame	ENST00000569059	ENST00000251102		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
5CDS-intron	ENST00000569059	ENST00000564654		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
5CDS-intron	ENST00000569059	ENST00000311183		TCGA	RV	UCEC	TCGA-EY-A54A-01A	PLLP	chr16	57318318	-	CNGB1	chr16	57946898	-
Frame-shit	ENST00000324093	ENST00000432054		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
Frame-shit	ENST00000324093	ENST00000393238		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
Frame-shit	ENST00000324093	ENST00000426664		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
Frame-shit	ENST00000324093	ENST00000329333		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
5CDS-intron	ENST00000324093	ENST00000515024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
3UTR-3CDS	ENST00000393239	ENST00000432054		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
3UTR-3CDS	ENST00000393239	ENST00000393238		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
3UTR-3CDS	ENST00000393239	ENST00000426664		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
3UTR-3CDS	ENST00000393239	ENST00000329333		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
3UTR-intron	ENST00000393239	ENST00000515024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
intron-3CDS	ENST00000504689	ENST00000432054		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
intron-3CDS	ENST00000504689	ENST00000393238		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
intron-3CDS	ENST00000504689	ENST00000426664		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
intron-3CDS	ENST00000504689	ENST00000329333		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
intron-intron	ENST00000504689	ENST00000515024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PLXND1	chr3	129277271	-	TMCC1	chr3	129373946	-
In-frame	ENST00000529359	ENST00000397166		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
In-frame	ENST00000529359	ENST00000520272		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000529359	ENST00000528888		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000529359	ENST00000517385		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000529359	ENST00000529845		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
In-frame	ENST00000424479	ENST00000397166		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
In-frame	ENST00000424479	ENST00000520272		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000424479	ENST00000528888		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000424479	ENST00000517385		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000424479	ENST00000529845		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
Frame-shit	ENST00000531823	ENST00000397166		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
Frame-shit	ENST00000531823	ENST00000520272		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000531823	ENST00000528888		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000531823	ENST00000517385		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000531823	ENST00000529845		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-3CDS	ENST00000530588	ENST00000397166		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-3CDS	ENST00000530588	ENST00000520272		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-intron	ENST00000530588	ENST00000528888		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-intron	ENST00000530588	ENST00000517385		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-intron	ENST00000530588	ENST00000529845		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
In-frame	ENST00000422581	ENST00000397166		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
In-frame	ENST00000422581	ENST00000520272		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000422581	ENST00000528888		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000422581	ENST00000517385		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
5CDS-intron	ENST00000422581	ENST00000529845		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-3CDS	ENST00000419686	ENST00000397166		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-3CDS	ENST00000419686	ENST00000520272		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-intron	ENST00000419686	ENST00000528888		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-intron	ENST00000419686	ENST00000517385		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
intron-intron	ENST00000419686	ENST00000529845		TCGA	RV	UCEC	TCGA-BK-A139-02A	PPAPDC1B	chr8	38123659	-	DDHD2	chr8	38117558	+
In-frame	ENST00000522684	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000522684	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000522684	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000522684	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
Frame-shit	ENST00000535192	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000535192	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000535192	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000535192	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
Frame-shit	ENST00000519465	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000519465	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000519465	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000519465	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
Frame-shit	ENST00000517887	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000517887	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000517887	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000517887	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
Frame-shit	ENST00000521059	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000521059	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000521059	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000521059	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
In-frame	ENST00000395218	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000395218	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000395218	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000395218	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
Frame-shit	ENST00000538769	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000538769	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000538769	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000538769	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
In-frame	ENST00000340930	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000340930	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000340930	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000340930	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
In-frame	ENST00000519419	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000519419	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000519419	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000519419	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000430260	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000430260	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000430260	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000430260	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000519881	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000519881	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000519881	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000519881	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000520892	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000520892	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000520892	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000520892	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000519635	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000519635	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000519635	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000519635	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000517712	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000517712	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000517712	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000517712	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000522950	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000522950	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000522950	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000522950	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-3CDS	ENST00000520151	ENST00000421797		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000520151	ENST00000429546		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000520151	ENST00000352689		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
intron-intron	ENST00000520151	ENST00000498778		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PTK2	chr8	141745350	-	MKLN1	chr7	131147976	+
5CDS-intron	ENST00000368226	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368226	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000368226	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368227	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368227	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000368227	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000532331	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000532331	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000532331	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368213	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368213	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000368213	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368210	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368210	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000368210	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368215	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368215	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000368215	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368207	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000368207	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000368207	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5UTR-intron	ENST00000524481	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5UTR-intron	ENST00000524481	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5UTR-5UTR	ENST00000524481	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000525459	ENST00000477822		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-intron	ENST00000525459	ENST00000229758		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
5CDS-5UTR	ENST00000525459	ENST00000367241		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	FBXO5	chr6	153296756	-
Frame-shit	ENST00000378823	ENST00000200652		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	RAD50	chr5	131973915	+	SLC22A4	chr5	131670411	+
5CDS-intron	ENST00000378823	ENST00000491257		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	RAD50	chr5	131973915	+	SLC22A4	chr5	131670411	+
Frame-shit	ENST00000265335	ENST00000200652		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	RAD50	chr5	131973915	+	SLC22A4	chr5	131670411	+
5CDS-intron	ENST00000265335	ENST00000491257		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	RAD50	chr5	131973915	+	SLC22A4	chr5	131670411	+
intron-3CDS	ENST00000487596	ENST00000200652		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	RAD50	chr5	131973915	+	SLC22A4	chr5	131670411	+
intron-intron	ENST00000487596	ENST00000491257		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	RAD50	chr5	131973915	+	SLC22A4	chr5	131670411	+
intron-3CDS	ENST00000534797	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000534797	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000534797	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534797	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534797	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534797	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000534797	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-3CDS	ENST00000397614	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000397614	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000397614	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397614	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397614	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397614	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397614	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-3CDS	ENST00000397615	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000397615	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000397615	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397615	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397615	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397615	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000397615	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-3CDS	ENST00000397604	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000397604	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000397604	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000397604	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000397604	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000397604	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000397604	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-3CDS	ENST00000533410	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000533410	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000533410	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000533410	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000533410	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000533410	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000533410	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-3CDS	ENST00000438658	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000438658	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000438658	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000438658	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000438658	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000438658	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000438658	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-3CDS	ENST00000354420	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000354420	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000354420	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000354420	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000354420	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000354420	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000354420	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-3CDS	ENST00000356187	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000356187	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-5UTR	ENST00000356187	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000356187	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000356187	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000356187	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
5UTR-intron	ENST00000356187	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-3CDS	ENST00000533592	ENST00000317204		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000533592	ENST00000527886		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-5UTR	ENST00000533592	ENST00000525159		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000533592	ENST00000263646		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000533592	ENST00000542915		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000533592	ENST00000527938		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
intron-intron	ENST00000533592	ENST00000528719		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RNH1	chr11	507113	-	TOLLIP	chr11	1317024	-
Frame-shit	ENST00000348405	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000348405	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000348405	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000348405	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000348405	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000348405	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000348405	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000348405	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000348405	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000348405	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000348405	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000513858	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000513858	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000513858	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000513858	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000513858	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000513858	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000513858	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000513858	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000513858	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000513858	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000513858	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
Frame-shit	ENST00000395310	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000395310	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000395310	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000395310	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000395310	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000395310	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000395310	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000395310	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000395310	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000395310	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000395310	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000443462	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000443462	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000443462	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000443462	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000443462	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000443462	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000443462	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000443462	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000443462	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000443462	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000443462	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000509142	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000509142	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000509142	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000509142	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000509142	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000509142	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000509142	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000509142	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000509142	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000509142	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000509142	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
Frame-shit	ENST00000326950	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000326950	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000326950	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000326950	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000326950	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000326950	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000326950	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000326950	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000326950	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000326950	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000326950	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
Frame-shit	ENST00000432794	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000432794	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000432794	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000432794	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000432794	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000432794	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000432794	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000432794	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000432794	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000432794	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000432794	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000311785	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000311785	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000311785	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000311785	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000311785	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000311785	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000311785	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000311785	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000311785	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000311785	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000311785	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
Frame-shit	ENST00000448323	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000448323	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000448323	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000448323	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000448323	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000448323	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000448323	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000448323	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000448323	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000448323	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000448323	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
Frame-shit	ENST00000505472	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000505472	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000505472	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000505472	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000505472	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000505472	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000505472	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000505472	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000505472	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000505472	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000505472	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000500777	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000500777	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000500777	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000500777	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000500777	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000500777	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000500777	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000500777	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000500777	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000500777	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000500777	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000508502	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508502	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508502	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508502	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508502	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508502	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508502	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508502	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508502	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508502	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508502	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
Frame-shit	ENST00000355196	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000355196	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000355196	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000355196	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000355196	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000355196	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000355196	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000355196	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000355196	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000355196	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-intron	ENST00000355196	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000264405	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000264405	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000264405	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000264405	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000264405	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000264405	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000264405	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000264405	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000264405	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000264405	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000264405	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000505984	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000505984	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000505984	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000505984	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000505984	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000505984	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000505984	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000505984	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000505984	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000505984	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000505984	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000508479	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508479	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508479	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508479	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508479	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508479	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508479	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508479	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508479	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000508479	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000508479	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-3CDS	ENST00000436790	ENST00000264211		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000436790	ENST00000400422		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000436790	ENST00000602326		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000436790	ENST00000374935		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000436790	ENST00000374937		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000436790	ENST00000536266		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000436790	ENST00000374933		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000436790	ENST00000544689		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000436790	ENST00000356916		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-5UTR	ENST00000436790	ENST00000374927		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
intron-intron	ENST00000436790	ENST00000537738		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	SEC31A	chr4	83763293	-	EIF4G3	chr1	21377487	-
5CDS-5UTR	ENST00000370010	ENST00000335647		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000370010	ENST00000335643		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000370010	ENST00000367411		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-intron	ENST00000370010	ENST00000494504		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000370014	ENST00000335647		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000370014	ENST00000335643		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000370014	ENST00000367411		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-intron	ENST00000370014	ENST00000494504		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000447266	ENST00000335647		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000447266	ENST00000335643		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000447266	ENST00000367411		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-intron	ENST00000447266	ENST00000494504		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
intron-5UTR	ENST00000541192	ENST00000335647		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
intron-5UTR	ENST00000541192	ENST00000335643		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
intron-5UTR	ENST00000541192	ENST00000367411		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
intron-intron	ENST00000541192	ENST00000494504		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000327284	ENST00000335647		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000327284	ENST00000335643		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-5UTR	ENST00000327284	ENST00000367411		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
5CDS-intron	ENST00000327284	ENST00000494504		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
3UTR-5UTR	ENST00000436928	ENST00000335647		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
3UTR-5UTR	ENST00000436928	ENST00000335643		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
3UTR-5UTR	ENST00000436928	ENST00000367411		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
3UTR-intron	ENST00000436928	ENST00000494504		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SENP6	chr6	76357517	+	KATNA1	chr6	149959696	-
Frame-shit	ENST00000301335	ENST00000305513		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	SLC43A2	chr17	1516489	-	SMYD4	chr17	1686770	-
Frame-shit	ENST00000571650	ENST00000305513		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	SLC43A2	chr17	1516489	-	SMYD4	chr17	1686770	-
Frame-shit	ENST00000382147	ENST00000305513		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	SLC43A2	chr17	1516489	-	SMYD4	chr17	1686770	-
intron-3CDS	ENST00000412517	ENST00000305513		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	SLC43A2	chr17	1516489	-	SMYD4	chr17	1686770	-
intron-3CDS	ENST00000574274	ENST00000305513		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	SLC43A2	chr17	1516489	-	SMYD4	chr17	1686770	-
5CDS-intron	ENST00000254480	ENST00000543878		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SMARCC1	chr3	47814307	-	SYCP2L	chr6	10942910	+
5CDS-intron	ENST00000254480	ENST00000283141		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SMARCC1	chr3	47814307	-	SYCP2L	chr6	10942910	+
5CDS-intron	ENST00000254480	ENST00000465872		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SMARCC1	chr3	47814307	-	SYCP2L	chr6	10942910	+
5UTR-intron	ENST00000425518	ENST00000543878		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SMARCC1	chr3	47814307	-	SYCP2L	chr6	10942910	+
5UTR-intron	ENST00000425518	ENST00000283141		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SMARCC1	chr3	47814307	-	SYCP2L	chr6	10942910	+
5UTR-intron	ENST00000425518	ENST00000465872		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	SMARCC1	chr3	47814307	-	SYCP2L	chr6	10942910	+
Frame-shit	ENST00000300584	ENST00000258873		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
Frame-shit	ENST00000300584	ENST00000541759		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
Frame-shit	ENST00000300584	ENST00000560817		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
5CDS-intron	ENST00000300584	ENST00000558828		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
Frame-shit	ENST00000409931	ENST00000258873		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
Frame-shit	ENST00000409931	ENST00000541759		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
Frame-shit	ENST00000409931	ENST00000560817		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
5CDS-intron	ENST00000409931	ENST00000558828		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
intron-3CDS	ENST00000492078	ENST00000258873		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
intron-3CDS	ENST00000492078	ENST00000541759		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
intron-3CDS	ENST00000492078	ENST00000560817		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
intron-intron	ENST00000492078	ENST00000558828		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TBC1D2B	chr15	78295647	-	ACSBG1	chr15	78472122	-
In-frame	ENST00000301365	ENST00000396981		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3438867	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000301365	ENST00000572484		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3438867	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000576742	ENST00000396981		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3438867	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000576742	ENST00000572484		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3438867	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000572519	ENST00000396981		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3438867	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000572519	ENST00000572484		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3438867	-	UBE2G1	chr17	4192703	-
intron-intron	ENST00000498443	ENST00000380950		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
intron-intron	ENST00000498443	ENST00000399334		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
intron-intron	ENST00000498443	ENST00000325747		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
intron-intron	ENST00000498443	ENST00000559398		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
5CDS-intron	ENST00000372003	ENST00000380950		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
5CDS-intron	ENST00000372003	ENST00000399334		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
5CDS-intron	ENST00000372003	ENST00000325747		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
5CDS-intron	ENST00000372003	ENST00000559398		TCGA	RV	UCEC	TCGA-AJ-A8CV-01A	TSPAN1	chr1	46651630	+	CEP152	chr15	49057864	-
In-frame	ENST00000248846	ENST00000359337		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
In-frame	ENST00000248846	ENST00000449103		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
5CDS-5UTR	ENST00000248846	ENST00000496720		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
intron-3CDS	ENST00000491449	ENST00000359337		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
intron-3CDS	ENST00000491449	ENST00000449103		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
intron-5UTR	ENST00000491449	ENST00000496720		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
In-frame	ENST00000439308	ENST00000359337		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
In-frame	ENST00000439308	ENST00000449103		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
5CDS-5UTR	ENST00000439308	ENST00000496720		TCGA	RV	UCEC	TCGA-EO-A22X-01A	TUBGCP6	chr22	50682148	-	PLXNB2	chr22	50723094	-
intron-3CDS	ENST00000335891	ENST00000334126		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	VPRBP	chr3	51533889	-	C2CD3	chr11	73850873	-
intron-3CDS	ENST00000335891	ENST00000313663		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	VPRBP	chr3	51533889	-	C2CD3	chr11	73850873	-
intron-intron	ENST00000335891	ENST00000542452		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	VPRBP	chr3	51533889	-	C2CD3	chr11	73850873	-
intron-intron	ENST00000335891	ENST00000539061		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	VPRBP	chr3	51533889	-	C2CD3	chr11	73850873	-
In-frame	ENST00000334512	ENST00000412050		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80976031	+	CPEB3	chr10	93904869	-
5CDS-intron	ENST00000334512	ENST00000265997		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80976031	+	CPEB3	chr10	93904869	-
intron-3CDS	ENST00000478357	ENST00000412050		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80976031	+	CPEB3	chr10	93904869	-
intron-intron	ENST00000478357	ENST00000265997		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80976031	+	CPEB3	chr10	93904869	-
intron-3CDS	ENST00000446377	ENST00000412050		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80976031	+	CPEB3	chr10	93904869	-
intron-intron	ENST00000446377	ENST00000265997		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80976031	+	CPEB3	chr10	93904869	-
Frame-shit	ENST00000360647	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
intron-3CDS	ENST00000468369	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
Frame-shit	ENST00000484491	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
intron-3CDS	ENST00000544464	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
Frame-shit	ENST00000492394	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
Frame-shit	ENST00000485866	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
5UTR-3CDS	ENST00000497929	ENST00000307503		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	ZNF148	chr3	125006947	-	AGXT	chr2	241810766	+
Frame-shit	ENST00000335016	ENST00000264908		TCGA	RV	UCEC	TCGA-PG-A914-01A	BMP2K	chr4	79697875	+	ANXA3	chr4	79494334	+
5CDS-intron	ENST00000335016	ENST00000512884		TCGA	RV	UCEC	TCGA-PG-A914-01A	BMP2K	chr4	79697875	+	ANXA3	chr4	79494334	+
5CDS-5UTR	ENST00000335016	ENST00000503570		TCGA	RV	UCEC	TCGA-PG-A914-01A	BMP2K	chr4	79697875	+	ANXA3	chr4	79494334	+
Frame-shit	ENST00000502871	ENST00000264908		TCGA	RV	UCEC	TCGA-PG-A914-01A	BMP2K	chr4	79697875	+	ANXA3	chr4	79494334	+
5CDS-intron	ENST00000502871	ENST00000512884		TCGA	RV	UCEC	TCGA-PG-A914-01A	BMP2K	chr4	79697875	+	ANXA3	chr4	79494334	+
5CDS-5UTR	ENST00000502871	ENST00000503570		TCGA	RV	UCEC	TCGA-PG-A914-01A	BMP2K	chr4	79697875	+	ANXA3	chr4	79494334	+
5UTR-3CDS	ENST00000254977	ENST00000307471		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000254977	ENST00000409765		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000254977	ENST00000410069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-intron	ENST00000254977	ENST00000486109		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000399006	ENST00000307471		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000399006	ENST00000409765		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000399006	ENST00000410069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-intron	ENST00000399006	ENST00000486109		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000405977	ENST00000307471		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000405977	ENST00000409765		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-3CDS	ENST00000405977	ENST00000410069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
5UTR-intron	ENST00000405977	ENST00000486109		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000378226	ENST00000307471		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000378226	ENST00000409765		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000378226	ENST00000410069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-intron	ENST00000378226	ENST00000486109		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000488503	ENST00000307471		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000488503	ENST00000409765		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000488503	ENST00000410069		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-intron	ENST00000488503	ENST00000486109		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	CCDC126	chr7	23682550	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A26L-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-3UTR	ENST00000535016	ENST00000469172		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000535016	ENST00000265866		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000535016	ENST00000441000		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000535016	ENST00000354695		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-3UTR	ENST00000265872	ENST00000469172		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000265872	ENST00000265866		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000265872	ENST00000441000		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000265872	ENST00000354695		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-3UTR	ENST00000543719	ENST00000469172		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000543719	ENST00000265866		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000543719	ENST00000441000		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
5CDS-5UTR	ENST00000543719	ENST00000354695		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
intron-3UTR	ENST00000483264	ENST00000469172		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
intron-5UTR	ENST00000483264	ENST00000265866		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
intron-5UTR	ENST00000483264	ENST00000441000		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
intron-5UTR	ENST00000483264	ENST00000354695		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	CCAR1	chr10	70509442	+	HNRNPH3	chr10	70096956	+
intron-5UTR	ENST00000511642	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000511642	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000415497	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000372988	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000510503	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
5UTR-5UTR	ENST00000511686	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372991	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000372987	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000541110		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000372917		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000372922		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000340840		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
intron-5UTR	ENST00000414200	ENST00000354325		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	CCND3	chr6	42016239	-	TRERF1	chr6	42268487	-
Frame-shit	ENST00000423902	ENST00000334018		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000423902	ENST00000404820		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000423902	ENST00000404755		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
5CDS-intron	ENST00000423902	ENST00000484039		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000524602	ENST00000334018		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000524602	ENST00000404820		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000524602	ENST00000404755		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-intron	ENST00000524602	ENST00000484039		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000525508	ENST00000334018		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000525508	ENST00000404820		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000525508	ENST00000404755		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
5CDS-intron	ENST00000525508	ENST00000484039		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000529472	ENST00000334018		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000529472	ENST00000404820		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-3CDS	ENST00000529472	ENST00000404755		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
intron-intron	ENST00000529472	ENST00000484039		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CHD7	chr8	61714152	+	EMID1	chr22	29610915	+
Frame-shit	ENST00000323786	ENST00000296350		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	COG4	chr16	70534861	-	MFI2	chr3	196753630	-
Frame-shit	ENST00000323786	ENST00000296351		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	COG4	chr16	70534861	-	MFI2	chr3	196753630	-
intron-3CDS	ENST00000393612	ENST00000296350		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	COG4	chr16	70534861	-	MFI2	chr3	196753630	-
intron-3CDS	ENST00000393612	ENST00000296351		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	COG4	chr16	70534861	-	MFI2	chr3	196753630	-
intron-3CDS	ENST00000564653	ENST00000296350		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	COG4	chr16	70534861	-	MFI2	chr3	196753630	-
intron-3CDS	ENST00000564653	ENST00000296351		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	COG4	chr16	70534861	-	MFI2	chr3	196753630	-
5CDS-5UTR	ENST00000254337	ENST00000284000		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	DCAF15	chr19	14065473	+	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000254337	ENST00000585933		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	DCAF15	chr19	14065473	+	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000262375	ENST00000370854		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000262375	ENST00000393760		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000262375	ENST00000370846		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000262375	ENST00000352634		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000262375	ENST00000353979		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000262375	ENST00000370842		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000262375	ENST00000345745		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-intron	ENST00000262375	ENST00000495735		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000370854		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000393760		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000370846		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000352634		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000353979		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000370842		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000355296	ENST00000345745		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-intron	ENST00000355296	ENST00000495735		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000370854		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000393760		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000370846		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000352634		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000353979		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000370842		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-5UTR	ENST00000431375	ENST00000345745		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
5CDS-intron	ENST00000431375	ENST00000495735		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000370854		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000393760		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000370846		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000352634		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000353979		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000370842		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-5UTR	ENST00000572139	ENST00000345745		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-intron	ENST00000572139	ENST00000495735		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	DNAJA3	chr16	4498849	+	ZDHHC16	chr10	99211428	+
intron-3CDS	ENST00000264899	ENST00000306010		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	FRAS1	chr4	79343154	+	MGMT	chr10	131334505	+
intron-intron	ENST00000264899	ENST00000462672		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	FRAS1	chr4	79343154	+	MGMT	chr10	131334505	+
Frame-shit	ENST00000325942	ENST00000306010		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	FRAS1	chr4	79343154	+	MGMT	chr10	131334505	+
5CDS-intron	ENST00000325942	ENST00000462672		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	FRAS1	chr4	79343154	+	MGMT	chr10	131334505	+
Frame-shit	ENST00000264895	ENST00000306010		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	FRAS1	chr4	79343154	+	MGMT	chr10	131334505	+
5CDS-intron	ENST00000264895	ENST00000462672		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	FRAS1	chr4	79343154	+	MGMT	chr10	131334505	+
Frame-shit	ENST00000373566	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
Frame-shit	ENST00000373563	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
Frame-shit	ENST00000409480	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
Frame-shit	ENST00000409547	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
Frame-shit	ENST00000409196	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
Frame-shit	ENST00000409451	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
intron-3CDS	ENST00000482666	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
Frame-shit	ENST00000452341	ENST00000376741		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	GIGYF2	chr2	233671367	+	SP2	chr17	45992678	+
5CDS-intron	ENST00000264235	ENST00000478553		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
5CDS-5UTR	ENST00000264235	ENST00000379400		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
5CDS-5UTR	ENST00000264235	ENST00000379376		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
5CDS-intron	ENST00000316626	ENST00000478553		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
5CDS-5UTR	ENST00000316626	ENST00000379400		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
5CDS-5UTR	ENST00000316626	ENST00000379376		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
intron-intron	ENST00000473886	ENST00000478553		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
intron-5UTR	ENST00000473886	ENST00000379400		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
intron-5UTR	ENST00000473886	ENST00000379376		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	GSK3B	chr3	119812194	-	RASSF2	chr20	4781708	-
5CDS-intron	ENST00000371208	ENST00000474476		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371208	ENST00000371218		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371208	ENST00000303721		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371208	ENST00000371212		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000371208	ENST00000371210		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
3UTR-intron	ENST00000465876	ENST00000474476		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
3UTR-intron	ENST00000465876	ENST00000371218		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
3UTR-intron	ENST00000465876	ENST00000303721		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
3UTR-intron	ENST00000465876	ENST00000371212		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
3UTR-intron	ENST00000465876	ENST00000371210		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395561	ENST00000474476		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395561	ENST00000371218		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395561	ENST00000303721		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395561	ENST00000371212		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5CDS-intron	ENST00000395561	ENST00000371210		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	HOOK1	chr1	60294524	+	FGGY	chr1	60223603	+
5UTR-intron	ENST00000372600	ENST00000377316		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000377321		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000377326		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000312049		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000315422		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000443283		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000394374		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-5UTR	ENST00000372600	ENST00000337652		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-5UTR	ENST00000372600	ENST00000394376		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000377313		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372600	ENST00000478548		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000377316		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000377321		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000377326		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000312049		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000315422		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000443283		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000394374		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-5UTR	ENST00000372599	ENST00000337652		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-5UTR	ENST00000372599	ENST00000394376		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000377313		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
5UTR-intron	ENST00000372599	ENST00000478548		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000377316		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000377321		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000377326		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000312049		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000315422		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000443283		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000394374		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-5UTR	ENST00000259324	ENST00000337652		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-5UTR	ENST00000259324	ENST00000394376		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000377313		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000259324	ENST00000478548		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000377316		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000377321		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000377326		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000312049		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000315422		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000443283		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000394374		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-5UTR	ENST00000492784	ENST00000337652		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-5UTR	ENST00000492784	ENST00000394376		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000377313		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
intron-intron	ENST00000492784	ENST00000478548		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LRRC8A	chr9	131644529	+	MEN1	chr11	64578377	-
In-frame	ENST00000356554	ENST00000393203		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MAN1A2	chr1	117984947	+	PTGFRN	chr1	117529423	+
5CDS-intron	ENST00000356554	ENST00000496699		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MAN1A2	chr1	117984947	+	PTGFRN	chr1	117529423	+
intron-3CDS	ENST00000482811	ENST00000393203		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MAN1A2	chr1	117984947	+	PTGFRN	chr1	117529423	+
intron-intron	ENST00000482811	ENST00000496699		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MAN1A2	chr1	117984947	+	PTGFRN	chr1	117529423	+
5UTR-5UTR	ENST00000401950	ENST00000586600		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000401950	ENST00000221554		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000401950	ENST00000587019		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-5UTR	ENST00000333027	ENST00000586600		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000333027	ENST00000221554		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000333027	ENST00000587019		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-5UTR	ENST00000323630	ENST00000586600		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000323630	ENST00000221554		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000323630	ENST00000587019		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-5UTR	ENST00000351488	ENST00000586600		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000351488	ENST00000221554		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
5UTR-intron	ENST00000351488	ENST00000587019		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
intron-5UTR	ENST00000406629	ENST00000586600		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
intron-intron	ENST00000406629	ENST00000221554		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
intron-intron	ENST00000406629	ENST00000587019		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
3UTR-5UTR	ENST00000415511	ENST00000586600		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
3UTR-intron	ENST00000415511	ENST00000221554		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
3UTR-intron	ENST00000415511	ENST00000587019		TCGA	RV	UCEC	TCGA-PG-A915-01A	MTMR3	chr22	30279348	+	CCDC130	chr19	13842989	+
Frame-shit	ENST00000216181	ENST00000216185		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
Frame-shit	ENST00000216181	ENST00000416967		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
5CDS-5UTR	ENST00000216181	ENST00000487725		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
5CDS-5UTR	ENST00000216181	ENST00000403313		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000475726	ENST00000216185		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000475726	ENST00000416967		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000475726	ENST00000487725		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000475726	ENST00000403313		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000401701	ENST00000216185		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-3CDS	ENST00000401701	ENST00000416967		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000401701	ENST00000487725		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
intron-5UTR	ENST00000401701	ENST00000403313		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	MYH9	chr22	36705327	-	TXN2	chr22	36863964	-
5CDS-3UTR	ENST00000296849	ENST00000512608		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
5CDS-3UTR	ENST00000296849	ENST00000296564		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
5CDS-3UTR	ENST00000274150	ENST00000512608		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
5CDS-3UTR	ENST00000274150	ENST00000296564		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
5CDS-3UTR	ENST00000537972	ENST00000512608		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
5CDS-3UTR	ENST00000537972	ENST00000296564		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
intron-3UTR	ENST00000382730	ENST00000512608		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
intron-3UTR	ENST00000382730	ENST00000296564		TCGA	RV	UCEC	TCGA-AX-A3FZ-01A	NKD2	chr5	1009675	+	KIAA0947	chr5	5454665	+
5UTR-3CDS	ENST00000307116	ENST00000310715		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000307116	ENST00000401621		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000307116	ENST00000493787		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-intron	ENST00000307116	ENST00000340329		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000307116	ENST00000355577		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000307116	ENST00000394865		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000373008	ENST00000310715		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000373008	ENST00000401621		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000373008	ENST00000493787		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-intron	ENST00000373008	ENST00000340329		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000373008	ENST00000355577		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000373008	ENST00000394865		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000263556	ENST00000310715		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000263556	ENST00000401621		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000263556	ENST00000493787		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-intron	ENST00000263556	ENST00000340329		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000263556	ENST00000355577		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000263556	ENST00000394865		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000412021	ENST00000310715		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000412021	ENST00000401621		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000412021	ENST00000493787		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-intron	ENST00000412021	ENST00000340329		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000412021	ENST00000355577		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000412021	ENST00000394865		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000440381	ENST00000310715		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000440381	ENST00000401621		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000440381	ENST00000493787		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-intron	ENST00000440381	ENST00000340329		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000440381	ENST00000355577		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000440381	ENST00000394865		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000394890	ENST00000310715		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-3CDS	ENST00000394890	ENST00000401621		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000394890	ENST00000493787		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-intron	ENST00000394890	ENST00000340329		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000394890	ENST00000355577		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
5UTR-5UTR	ENST00000394890	ENST00000394865		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	P4HA1	chr10	74856524	-	TTC18	chr10	75059423	-
Frame-shit	ENST00000358506	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000358506	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000358506	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000358506	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000358506	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000358506	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000296122	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000296122	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000296122	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000296122	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000296122	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000296122	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000395366	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000395366	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000395366	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000395366	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000395366	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000395366	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PPP1CB	chr2	28975042	+	PI4KB	chr1	151280277	-
In-frame	ENST00000444746	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000444746	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000444746	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000444746	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000444746	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000444746	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000444746	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000453091	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000453091	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000453091	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000453091	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000453091	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000453091	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000453091	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000428287	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000428287	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428287	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428287	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428287	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000428287	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000428287	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000243326	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000243326	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000243326	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000243326	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000243326	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000243326	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000243326	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000430328	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
In-frame	ENST00000430328	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000430328	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000430328	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000430328	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-intron	ENST00000430328	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5CDS-5UTR	ENST00000430328	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000433166	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000433166	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000433166	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000433166	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000433166	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000433166	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-5UTR	ENST00000433166	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000457745	ENST00000286063		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-3CDS	ENST00000457745	ENST00000358450		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000457745	ENST00000450799		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000457745	ENST00000409504		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000457745	ENST00000389683		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-intron	ENST00000457745	ENST00000449286		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
intron-5UTR	ENST00000457745	ENST00000497003		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	RIF1	chr2	152318980	+	PDE11A	chr2	178592900	-
5UTR-5UTR	ENST00000537330	ENST00000414820		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5UTR-5UTR	ENST00000537330	ENST00000272610		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5UTR-5UTR	ENST00000537330	ENST00000440566		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5UTR-intron	ENST00000537330	ENST00000468548		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000570891	ENST00000414820		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000570891	ENST00000272610		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000570891	ENST00000440566		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-intron	ENST00000570891	ENST00000468548		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000306801	ENST00000414820		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000306801	ENST00000272610		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000306801	ENST00000440566		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-intron	ENST00000306801	ENST00000468548		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000544334	ENST00000414820		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000544334	ENST00000272610		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-5UTR	ENST00000544334	ENST00000440566		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
5CDS-intron	ENST00000544334	ENST00000468548		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
intron-5UTR	ENST00000575542	ENST00000414820		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
intron-5UTR	ENST00000575542	ENST00000272610		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
intron-5UTR	ENST00000575542	ENST00000440566		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
intron-intron	ENST00000575542	ENST00000468548		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	RPTOR	chr17	78599593	+	FAHD2B	chr2	97757449	-
Frame-shit	ENST00000427662	ENST00000324096		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000427662	ENST00000597681		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000427662	ENST00000544059		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
Frame-shit	ENST00000369774	ENST00000324096		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000369774	ENST00000597681		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000369774	ENST00000544059		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
Frame-shit	ENST00000355946	ENST00000324096		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000355946	ENST00000597681		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000355946	ENST00000544059		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5UTR-3CDS	ENST00000315994	ENST00000324096		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5UTR-intron	ENST00000315994	ENST00000597681		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
5UTR-intron	ENST00000315994	ENST00000544059		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
intron-3CDS	ENST00000540321	ENST00000324096		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
intron-intron	ENST00000540321	ENST00000597681		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
intron-intron	ENST00000540321	ENST00000544059		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
intron-3CDS	ENST00000538130	ENST00000324096		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
intron-intron	ENST00000538130	ENST00000597681		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
intron-intron	ENST00000538130	ENST00000544059		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	SH3PXD2A	chr10	105452786	-	MAP1S	chr19	17845082	+
In-frame	ENST00000263593	ENST00000527524		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
In-frame	ENST00000263593	ENST00000438375		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
5CDS-intron	ENST00000263593	ENST00000527130		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
Frame-shit	ENST00000545756	ENST00000527524		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
Frame-shit	ENST00000545756	ENST00000438375		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
5CDS-intron	ENST00000545756	ENST00000527130		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
intron-3CDS	ENST00000525730	ENST00000527524		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
intron-3CDS	ENST00000525730	ENST00000438375		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
intron-intron	ENST00000525730	ENST00000527130		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SIAE	chr11	124530524	-	GRIK4	chr11	120823564	+
3UTR-intron	ENST00000310358	ENST00000471694		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SPON1	chr11	14063201	+	CD47	chr3	107799191	-
3UTR-intron	ENST00000310358	ENST00000355354		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SPON1	chr11	14063201	+	CD47	chr3	107799191	-
3UTR-intron	ENST00000310358	ENST00000361309		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SPON1	chr11	14063201	+	CD47	chr3	107799191	-
5CDS-intron	ENST00000393651	ENST00000374118		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
5CDS-intron	ENST00000393651	ENST00000473174		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
intron-intron	ENST00000357311	ENST00000374118		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
intron-intron	ENST00000357311	ENST00000473174		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
intron-intron	ENST00000489828	ENST00000374118		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
intron-intron	ENST00000489828	ENST00000473174		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
intron-intron	ENST00000493638	ENST00000374118		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
intron-intron	ENST00000493638	ENST00000473174		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	KIF12	chr9	116861449	-
Frame-shit	ENST00000337137	ENST00000454366		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	TBC1D22A	chr22	47433094	+	GTSE1	chr22	46704047	+
intron-3CDS	ENST00000380995	ENST00000454366		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	TBC1D22A	chr22	47433094	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000407381	ENST00000454366		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	TBC1D22A	chr22	47433094	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000355704	ENST00000454366		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	TBC1D22A	chr22	47433094	+	GTSE1	chr22	46704047	+
intron-3CDS	ENST00000472791	ENST00000454366		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	TBC1D22A	chr22	47433094	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000406733	ENST00000454366		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	TBC1D22A	chr22	47433094	+	GTSE1	chr22	46704047	+
5CDS-intron	ENST00000534894	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000534894	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000534894	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000536810	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000545257	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000355995	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000543371	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000355717	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000355717	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000355717	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000538897	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5CDS-intron	ENST00000349937	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369397	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369397	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369397	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000352065	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000352065	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000352065	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369395	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369395	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369395	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000542695	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000542695	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000542695	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369389	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369389	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369389	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000369386	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000432306		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000393077		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
intron-intron	ENST00000466338	ENST00000483122		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	TCF7L2	chr10	114724383	+	VTI1A	chr10	114575049	+
5UTR-3CDS	ENST00000229201	ENST00000379441		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000229201	ENST00000179765		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000229201	ENST00000551812		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000229201	ENST00000549884		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-intron	ENST00000229201	ENST00000553222		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000553532	ENST00000379441		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000553532	ENST00000179765		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000553532	ENST00000551812		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000553532	ENST00000549884		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-intron	ENST00000553532	ENST00000553222		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000554616	ENST00000379441		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000554616	ENST00000179765		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000554616	ENST00000551812		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-3CDS	ENST00000554616	ENST00000549884		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5UTR-intron	ENST00000554616	ENST00000553222		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	TIMELESS	chr12	56843094	-	BAZ2A	chr12	56997484	-
5CDS-intron	ENST00000301923	ENST00000354694		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-5UTR	ENST00000301923	ENST00000402281		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-5UTR	ENST00000301923	ENST00000405677		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-intron	ENST00000301923	ENST00000402284		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-intron	ENST00000301923	ENST00000335214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-5UTR	ENST00000301923	ENST00000492986		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-intron	ENST00000402203	ENST00000354694		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-5UTR	ENST00000402203	ENST00000402281		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-5UTR	ENST00000402203	ENST00000405677		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-intron	ENST00000402203	ENST00000402284		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-intron	ENST00000402203	ENST00000335214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5CDS-5UTR	ENST00000402203	ENST00000492986		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000454349	ENST00000354694		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000454349	ENST00000402281		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000454349	ENST00000405677		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000454349	ENST00000402284		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000454349	ENST00000335214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000454349	ENST00000492986		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000335727	ENST00000354694		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000335727	ENST00000402281		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000335727	ENST00000405677		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000335727	ENST00000402284		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000335727	ENST00000335214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000335727	ENST00000492986		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000497559	ENST00000354694		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000497559	ENST00000402281		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000497559	ENST00000405677		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000497559	ENST00000402284		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-intron	ENST00000497559	ENST00000335214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
intron-5UTR	ENST00000497559	ENST00000492986		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TNRC6B	chr22	40552186	+	PES1	chr22	31001504	-
5UTR-3CDS	ENST00000171887	ENST00000295704		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	TNS1	chr2	218771058	-	RNF25	chr2	219533402	-
5UTR-3CDS	ENST00000419504	ENST00000295704		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	TNS1	chr2	218771058	-	RNF25	chr2	219533402	-
5UTR-3CDS	ENST00000430930	ENST00000295704		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	TNS1	chr2	218771058	-	RNF25	chr2	219533402	-
intron-3CDS	ENST00000310858	ENST00000295704		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	TNS1	chr2	218771058	-	RNF25	chr2	219533402	-
intron-3CDS	ENST00000480665	ENST00000295704		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	TNS1	chr2	218771058	-	RNF25	chr2	219533402	-
5UTR-3CDS	ENST00000340513	ENST00000264674		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000340513	ENST00000392736		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000340513	ENST00000464456		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000340513	ENST00000472280		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000340513	ENST00000494292		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000340513	ENST00000468789		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-intron	ENST00000340513	ENST00000460814		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000340513	ENST00000433243		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-intron	ENST00000340513	ENST00000485957		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-3CDS	ENST00000300403	ENST00000264674		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000300403	ENST00000392736		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000300403	ENST00000464456		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000300403	ENST00000472280		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000300403	ENST00000494292		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000300403	ENST00000468789		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-intron	ENST00000300403	ENST00000460814		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-5UTR	ENST00000300403	ENST00000433243		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5UTR-intron	ENST00000300403	ENST00000485957		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168861620	-
5CDS-5UTR	ENST00000437508	ENST00000485070		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
5CDS-3UTR	ENST00000437508	ENST00000469348		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
5CDS-intron	ENST00000437508	ENST00000315184		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
3UTR-5UTR	ENST00000494872	ENST00000485070		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
3UTR-3UTR	ENST00000494872	ENST00000469348		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
3UTR-intron	ENST00000494872	ENST00000315184		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
5CDS-5UTR	ENST00000338700	ENST00000485070		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
5CDS-3UTR	ENST00000338700	ENST00000469348		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
5CDS-intron	ENST00000338700	ENST00000315184		TCGA	RV	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128353977	+
5CDS-intron	ENST00000400301	ENST00000486901		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000400301	ENST00000374695		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000400301	ENST00000430507		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000308271	ENST00000486901		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000308271	ENST00000374695		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000308271	ENST00000430507		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
intron-intron	ENST00000374732	ENST00000486901		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
intron-intron	ENST00000374732	ENST00000374695		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
intron-intron	ENST00000374732	ENST00000430507		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000529637	ENST00000486901		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000529637	ENST00000374695		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000529637	ENST00000430507		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
intron-intron	ENST00000479177	ENST00000486901		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
intron-intron	ENST00000479177	ENST00000374695		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
intron-intron	ENST00000479177	ENST00000430507		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000421625	ENST00000486901		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000421625	ENST00000374695		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
5CDS-intron	ENST00000421625	ENST00000430507		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	USP48	chr1	22109317	-	HSPG2	chr1	22160107	-
In-frame	ENST00000322357	ENST00000262948		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZBTB7A	chr19	4053969	-	MAP2K2	chr19	4097341	-
In-frame	ENST00000322357	ENST00000394867		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZBTB7A	chr19	4053969	-	MAP2K2	chr19	4097341	-
5CDS-intron	ENST00000322357	ENST00000599345		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZBTB7A	chr19	4053969	-	MAP2K2	chr19	4097341	-
Frame-shit	ENST00000601588	ENST00000262948		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZBTB7A	chr19	4053969	-	MAP2K2	chr19	4097341	-
Frame-shit	ENST00000601588	ENST00000394867		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZBTB7A	chr19	4053969	-	MAP2K2	chr19	4097341	-
5CDS-intron	ENST00000601588	ENST00000599345		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZBTB7A	chr19	4053969	-	MAP2K2	chr19	4097341	-
Frame-shit	ENST00000311275	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000311275	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000311275	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000311275	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000360911	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000360911	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000360911	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000360911	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000458360	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000458360	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000458360	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000458360	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000262975	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000262975	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000262975	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000262975	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000471951	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000471951	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000471951	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000471951	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000352431	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000352431	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000352431	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000352431	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000396281	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000396281	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000396281	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000396281	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000446994	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000446994	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000446994	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000446994	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000536340	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000536340	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000536340	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000536340	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000355972	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000355972	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000355972	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000355972	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000540497	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000540497	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000540497	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000540497	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000461685	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000461685	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000461685	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000461685	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000372023	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
In-frame	ENST00000372023	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000372023	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
5CDS-intron	ENST00000372023	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
intron-3CDS	ENST00000468376	ENST00000357410		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
intron-3CDS	ENST00000468376	ENST00000327619		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
intron-intron	ENST00000468376	ENST00000497428		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
intron-intron	ENST00000468376	ENST00000317304		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZMYND8	chr20	45852970	-	EYA2	chr20	45700824	+
Frame-shit	ENST00000311275	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000311275	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000360911	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000360911	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000458360	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000458360	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
In-frame	ENST00000262975	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000262975	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000471951	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000471951	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000352431	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000352431	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000396281	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000396281	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
In-frame	ENST00000446994	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000446994	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000536340	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000536340	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
In-frame	ENST00000355972	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000355972	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000540497	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000540497	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000461685	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000461685	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000372023	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
5CDS-intron	ENST00000372023	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
intron-3CDS	ENST00000468376	ENST00000315869		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
intron-intron	ENST00000468376	ENST00000487451		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ZMYND8	chr20	45849965	-	TFE3	chrX	48896935	-
Frame-shit	ENST00000306065	ENST00000590341		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	ANKRD27	chr19	33135231	-	SLC7A9	chr19	33321590	-
Frame-shit	ENST00000306065	ENST00000023064		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	ANKRD27	chr19	33135231	-	SLC7A9	chr19	33321590	-
Frame-shit	ENST00000306065	ENST00000587772		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	ANKRD27	chr19	33135231	-	SLC7A9	chr19	33321590	-
Frame-shit	ENST00000587352	ENST00000590341		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	ANKRD27	chr19	33135231	-	SLC7A9	chr19	33321590	-
Frame-shit	ENST00000587352	ENST00000023064		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	ANKRD27	chr19	33135231	-	SLC7A9	chr19	33321590	-
Frame-shit	ENST00000587352	ENST00000587772		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	ANKRD27	chr19	33135231	-	SLC7A9	chr19	33321590	-
5UTR-3CDS	ENST00000378455	ENST00000379374		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000378455	ENST00000537599		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000378455	ENST00000535894		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000378455	ENST00000418858		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-intron	ENST00000378455	ENST00000475778		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000342274	ENST00000379374		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000342274	ENST00000537599		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000342274	ENST00000535894		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000342274	ENST00000418858		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-intron	ENST00000342274	ENST00000475778		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378463	ENST00000379374		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378463	ENST00000537599		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378463	ENST00000535894		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378463	ENST00000418858		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-intron	ENST00000378463	ENST00000475778		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000397354	ENST00000379374		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000397354	ENST00000537599		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000397354	ENST00000535894		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000397354	ENST00000418858		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-intron	ENST00000397354	ENST00000475778		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378444	ENST00000379374		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378444	ENST00000537599		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378444	ENST00000535894		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-3CDS	ENST00000378444	ENST00000418858		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
intron-intron	ENST00000378444	ENST00000475778		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	BCOR	chrX	40036260	-	PHEX	chrX	22231021	+
5UTR-3CDS	ENST00000399824	ENST00000244728		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000399824	ENST00000370819		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000399824	ENST00000535941		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000399824	ENST00000370808		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-5UTR	ENST00000399824	ENST00000467045		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000405659	ENST00000244728		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000405659	ENST00000370819		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000405659	ENST00000535941		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000405659	ENST00000370808		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-5UTR	ENST00000405659	ENST00000467045		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000338306	ENST00000244728		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000338306	ENST00000370819		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000338306	ENST00000535941		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-3CDS	ENST00000338306	ENST00000370808		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
5UTR-5UTR	ENST00000338306	ENST00000467045		TCGA	RV	UCEC	TCGA-PG-A915-01A	CCDC157	chr22	30758103	+	COL21A1	chr6	55942371	-
In-frame	ENST00000374379	ENST00000436717		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
In-frame	ENST00000374379	ENST00000374395		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
In-frame	ENST00000374379	ENST00000412742		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
5CDS-intron	ENST00000374379	ENST00000538532		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
5CDS-intron	ENST00000374379	ENST00000374393		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
3UTR-3CDS	ENST00000497755	ENST00000436717		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
3UTR-3CDS	ENST00000497755	ENST00000374395		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
3UTR-3CDS	ENST00000497755	ENST00000412742		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
3UTR-intron	ENST00000497755	ENST00000538532		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
3UTR-intron	ENST00000497755	ENST00000374393		TCGA	RV	UCEC	TCGA-PG-A914-01A	CLIC4	chr1	25072116	+	RCAN3	chr1	24857708	+
Frame-shit	ENST00000398519	ENST00000269389		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
5CDS-intron	ENST00000398519	ENST00000580437		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
Frame-shit	ENST00000314028	ENST00000269389		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
5CDS-intron	ENST00000314028	ENST00000580437		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
Frame-shit	ENST00000392334	ENST00000269389		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
5CDS-intron	ENST00000392334	ENST00000580437		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
intron-3CDS	ENST00000578904	ENST00000269389		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
intron-intron	ENST00000578904	ENST00000580437		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	CSNK1D	chr17	80231182	-	SECTM1	chr17	80280887	-
5CDS-5UTR	ENST00000425346	ENST00000442092		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000425346	ENST00000266022		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000425346	ENST00000443081		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000425346	ENST00000539992		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000425346	ENST00000441115		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000425346	ENST00000422955		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000425346	ENST00000421682		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000424512	ENST00000442092		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000424512	ENST00000266022		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000424512	ENST00000443081		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000424512	ENST00000539992		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000424512	ENST00000441115		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000424512	ENST00000422955		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000424512	ENST00000421682		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000232508	ENST00000442092		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000232508	ENST00000266022		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000232508	ENST00000443081		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000232508	ENST00000539992		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000232508	ENST00000441115		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000232508	ENST00000422955		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000232508	ENST00000421682		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000418577	ENST00000442092		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000418577	ENST00000266022		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000418577	ENST00000443081		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000418577	ENST00000539992		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-3UTR	ENST00000418577	ENST00000441115		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-5UTR	ENST00000418577	ENST00000422955		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
5CDS-intron	ENST00000418577	ENST00000421682		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-5UTR	ENST00000419046	ENST00000442092		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-5UTR	ENST00000419046	ENST00000266022		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-5UTR	ENST00000419046	ENST00000443081		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-intron	ENST00000419046	ENST00000539992		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-3UTR	ENST00000419046	ENST00000441115		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-5UTR	ENST00000419046	ENST00000422955		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
3UTR-intron	ENST00000419046	ENST00000421682		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CYB561D2	chr3	50388991	+	RBM6	chr3	50085678	+
Frame-shit	ENST00000359866	ENST00000595618		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	DDA1	chr19	17420466	+	MYO9B	chr19	17311448	+
Frame-shit	ENST00000359866	ENST00000594824		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	DDA1	chr19	17420466	+	MYO9B	chr19	17311448	+
Frame-shit	ENST00000359866	ENST00000397274		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	DDA1	chr19	17420466	+	MYO9B	chr19	17311448	+
5CDS-intron	ENST00000359866	ENST00000593411		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	DDA1	chr19	17420466	+	MYO9B	chr19	17311448	+
Frame-shit	ENST00000291270	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
5CDS-intron	ENST00000291270	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
Frame-shit	ENST00000600757	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
5CDS-intron	ENST00000600757	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
Frame-shit	ENST00000343373	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
5CDS-intron	ENST00000343373	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
Frame-shit	ENST00000447742	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
5CDS-intron	ENST00000447742	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
Frame-shit	ENST00000458663	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
5CDS-intron	ENST00000458663	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
Frame-shit	ENST00000354227	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
5CDS-intron	ENST00000354227	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
intron-3CDS	ENST00000595361	ENST00000270645		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
intron-intron	ENST00000595361	ENST00000593644		TCGA	RV	UCEC	TCGA-PG-A914-01A	DMPK	chr19	46282522	-	RCN3	chr19	50037450	+
In-frame	ENST00000585892	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000585892	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000585892	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000585892	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000314646	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000314646	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000314646	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000314646	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000359692	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000359692	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000359692	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000359692	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000389253	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000389253	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000389253	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000389253	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000355667	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000355667	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000355667	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000355667	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000408974	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000408974	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
In-frame	ENST00000408974	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
5CDS-intron	ENST00000408974	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000591819	ENST00000407327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000591819	ENST00000335757		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
intron-3CDS	ENST00000591819	ENST00000586078		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
intron-intron	ENST00000591819	ENST00000588214		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	DNM2	chr19	10870487	+	SLC44A2	chr19	10736929	+
Frame-shit	ENST00000318522	ENST00000294964		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000318522	ENST00000480099		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
Frame-shit	ENST00000402711	ENST00000294964		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000402711	ENST00000480099		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
intron-3CDS	ENST00000482660	ENST00000294964		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
intron-intron	ENST00000482660	ENST00000480099		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
Frame-shit	ENST00000401738	ENST00000294964		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000401738	ENST00000480099		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
Frame-shit	ENST00000453191	ENST00000294964		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
5CDS-intron	ENST00000453191	ENST00000480099		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EML4	chr2	42553392	+	PKDCC	chr2	42280379	+
In-frame	ENST00000324331	ENST00000344537		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000324331	ENST00000355917		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000324331	ENST00000338950		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000324331	ENST00000462989		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
In-frame	ENST00000274680	ENST00000344537		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000274680	ENST00000355917		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000274680	ENST00000338950		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5CDS-intron	ENST00000274680	ENST00000462989		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	FARS2	chr6	5613553	+	DTNBP1	chr6	15593312	-
5UTR-3UTR	ENST00000375771	ENST00000494280		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
5UTR-3UTR	ENST00000375771	ENST00000375910		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000375766	ENST00000494280		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000375766	ENST00000375910		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000400773	ENST00000494280		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000400773	ENST00000375910		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000441801	ENST00000494280		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000441801	ENST00000375910		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000332305	ENST00000494280		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000332305	ENST00000375910		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000509138	ENST00000494280		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000509138	ENST00000375910		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084824	+	CELA2B	chr1	15802952	+
5UTR-5UTR	ENST00000368655	ENST00000414820		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	GATAD2B	chr1	153895209	-	FAHD2B	chr2	97757449	-
5UTR-5UTR	ENST00000368655	ENST00000272610		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	GATAD2B	chr1	153895209	-	FAHD2B	chr2	97757449	-
5UTR-5UTR	ENST00000368655	ENST00000440566		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	GATAD2B	chr1	153895209	-	FAHD2B	chr2	97757449	-
5UTR-intron	ENST00000368655	ENST00000468548		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	GATAD2B	chr1	153895209	-	FAHD2B	chr2	97757449	-
Frame-shit	ENST00000225724	ENST00000228027		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000225724	ENST00000376262		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
5CDS-intron	ENST00000225724	ENST00000605608		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000451249	ENST00000228027		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000451249	ENST00000376262		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
5CDS-intron	ENST00000451249	ENST00000605608		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000467337	ENST00000228027		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000467337	ENST00000376262		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
5CDS-intron	ENST00000467337	ENST00000605608		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000581721	ENST00000228027		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
Frame-shit	ENST00000581721	ENST00000376262		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
5CDS-intron	ENST00000581721	ENST00000605608		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000579905	ENST00000228027		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000579905	ENST00000376262		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
intron-intron	ENST00000579905	ENST00000605608		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GOSR1	chr17	28819771	+	DGAT2	chr11	75507373	+
intron-3CDS	ENST00000472863	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000472863	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-intron	ENST00000472863	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000498678	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000498678	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-intron	ENST00000498678	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000460160	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000460160	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-intron	ENST00000460160	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000476342	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000476342	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-intron	ENST00000476342	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000552000	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000552000	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-intron	ENST00000552000	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000470495	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-3CDS	ENST00000470495	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
intron-intron	ENST00000470495	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000311626	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000311626	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-intron	ENST00000311626	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
Frame-shit	ENST00000490677	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
Frame-shit	ENST00000490677	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5CDS-intron	ENST00000490677	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000485909	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000485909	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-intron	ENST00000485909	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000489475	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-3CDS	ENST00000489475	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5UTR-intron	ENST00000489475	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
In-frame	ENST00000465120	ENST00000188790		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
In-frame	ENST00000465120	ENST00000443424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5CDS-intron	ENST00000465120	ENST00000493182		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163044873	-
5CDS-5UTR	ENST00000534064	ENST00000340067		TCGA	RV	UCEC	TCGA-PG-A915-01A	INTS4	chr11	77666988	-	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000535943	ENST00000340067		TCGA	RV	UCEC	TCGA-PG-A915-01A	INTS4	chr11	77666988	-	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000525931	ENST00000340067		TCGA	RV	UCEC	TCGA-PG-A915-01A	INTS4	chr11	77666988	-	KCTD21	chr11	77885629	-
5CDS-5UTR	ENST00000529807	ENST00000340067		TCGA	RV	UCEC	TCGA-PG-A915-01A	INTS4	chr11	77666988	-	KCTD21	chr11	77885629	-
intron-5UTR	ENST00000527522	ENST00000340067		TCGA	RV	UCEC	TCGA-PG-A915-01A	INTS4	chr11	77666988	-	KCTD21	chr11	77885629	-
intron-3CDS	ENST00000584767	ENST00000431231		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
intron-3CDS	ENST00000584767	ENST00000437668		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
intron-3UTR	ENST00000584767	ENST00000582409		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
intron-5UTR	ENST00000584767	ENST00000443378		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000581589	ENST00000431231		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000581589	ENST00000437668		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000581589	ENST00000582409		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000581589	ENST00000443378		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000322444	ENST00000431231		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
In-frame	ENST00000322444	ENST00000437668		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
5CDS-3UTR	ENST00000322444	ENST00000582409		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
5CDS-5UTR	ENST00000322444	ENST00000443378		TCGA	RV	UCEC	TCGA-KJ-A3U4-01A	KCTD2	chr17	73055700	+	ARHGAP23	chr17	36614346	+
Frame-shit	ENST00000558518	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558518	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558518	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558518	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558518	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558518	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000558518	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000557933	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000557933	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000455727	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000455727	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000455727	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000455727	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000455727	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000455727	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000455727	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000535915	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000535915	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000535915	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000535915	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000535915	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000535915	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000535915	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000545707	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000545707	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000545707	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000545707	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000545707	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000545707	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000545707	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558013	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558013	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558013	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558013	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558013	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000558013	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
5CDS-intron	ENST00000558013	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000585892		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000314646		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000359692		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000389253		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000355667		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-3CDS	ENST00000560628	ENST00000408974		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
intron-intron	ENST00000560628	ENST00000591819		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	LDLR	chr19	11200291	+	DNM2	chr19	10935733	+
Frame-shit	ENST00000302787	ENST00000337190		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LETM1	chr4	1838156	-	MXD4	chr4	2259738	-
5CDS-5UTR	ENST00000302787	ENST00000515378		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LETM1	chr4	1838156	-	MXD4	chr4	2259738	-
intron-3CDS	ENST00000512189	ENST00000337190		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LETM1	chr4	1838156	-	MXD4	chr4	2259738	-
intron-5UTR	ENST00000512189	ENST00000515378		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	LETM1	chr4	1838156	-	MXD4	chr4	2259738	-
Frame-shit	ENST00000360614	ENST00000439268		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000360614	ENST00000340578		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000360614	ENST00000541471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000360614	ENST00000591092		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000360614	ENST00000034275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-5UTR	ENST00000360614	ENST00000591124		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
In-frame	ENST00000585374	ENST00000439268		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
In-frame	ENST00000585374	ENST00000340578		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000585374	ENST00000541471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000585374	ENST00000591092		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000585374	ENST00000034275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-5UTR	ENST00000585374	ENST00000591124		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000593119	ENST00000439268		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000593119	ENST00000340578		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000593119	ENST00000541471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000593119	ENST00000591092		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000593119	ENST00000034275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-5UTR	ENST00000593119	ENST00000591124		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000540670	ENST00000439268		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000540670	ENST00000340578		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000540670	ENST00000541471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000540670	ENST00000591092		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000540670	ENST00000034275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-5UTR	ENST00000540670	ENST00000591124		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000590729	ENST00000439268		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000590729	ENST00000340578		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000590729	ENST00000541471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000590729	ENST00000591092		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-intron	ENST00000590729	ENST00000034275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
5CDS-5UTR	ENST00000590729	ENST00000591124		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
intron-3CDS	ENST00000590511	ENST00000439268		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
intron-3CDS	ENST00000590511	ENST00000340578		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
intron-intron	ENST00000590511	ENST00000541471		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
intron-intron	ENST00000590511	ENST00000591092		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
intron-intron	ENST00000590511	ENST00000034275		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
intron-5UTR	ENST00000590511	ENST00000591124		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	LONP1	chr19	5696065	-	RANBP3	chr19	5957984	-
Frame-shit	ENST00000535741	ENST00000398309		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000535741	ENST00000376104		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000535741	ENST00000418306		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000535741	ENST00000280241		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000535741	ENST00000543673		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000376106		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000330014		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000537455		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000524982		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000532653		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000531015		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000535741	ENST00000398301		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000535741	ENST00000426717		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000535741	ENST00000404783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000535741	ENST00000398304		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000535741	ENST00000530800		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000535741	ENST00000472545		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000510413	ENST00000398309		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000510413	ENST00000376104		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000510413	ENST00000418306		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000510413	ENST00000280241		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000510413	ENST00000543673		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000376106		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000330014		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000537455		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000524982		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000532653		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000531015		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000510413	ENST00000398301		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000510413	ENST00000426717		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000510413	ENST00000404783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000510413	ENST00000398304		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000510413	ENST00000530800		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000510413	ENST00000472545		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-3CDS	ENST00000503716	ENST00000398309		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-3CDS	ENST00000503716	ENST00000376104		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-3CDS	ENST00000503716	ENST00000418306		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-3CDS	ENST00000503716	ENST00000280241		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-3CDS	ENST00000503716	ENST00000543673		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000376106		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000330014		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000537455		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000524982		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000532653		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000531015		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-5UTR	ENST00000503716	ENST00000398301		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-intron	ENST00000503716	ENST00000426717		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-intron	ENST00000503716	ENST00000404783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-intron	ENST00000503716	ENST00000398304		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-intron	ENST00000503716	ENST00000530800		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5UTR-intron	ENST00000503716	ENST00000472545		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000357115	ENST00000398309		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000357115	ENST00000376104		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000357115	ENST00000418306		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000357115	ENST00000280241		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
Frame-shit	ENST00000357115	ENST00000543673		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000376106		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000330014		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000537455		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000524982		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000532653		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000531015		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000357115	ENST00000398301		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000357115	ENST00000426717		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000357115	ENST00000404783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000357115	ENST00000398304		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000357115	ENST00000530800		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000357115	ENST00000472545		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000507224	ENST00000398309		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000507224	ENST00000376104		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000507224	ENST00000418306		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000507224	ENST00000280241		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
In-frame	ENST00000507224	ENST00000543673		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000376106		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000330014		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000537455		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000524982		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000532653		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000531015		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-5UTR	ENST00000507224	ENST00000398301		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000507224	ENST00000426717		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000507224	ENST00000404783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000507224	ENST00000398304		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000507224	ENST00000530800		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
5CDS-intron	ENST00000507224	ENST00000472545		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	LRBA	chr4	151271144	-	DLG2	chr11	83770527	-
intron-3CDS	ENST00000264674	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000264674	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000264674	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000264674	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000264674	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000392736	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000392736	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000392736	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000392736	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000392736	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000464456	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000464456	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000464456	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000464456	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000464456	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000472280	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000472280	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000472280	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000472280	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000472280	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
Frame-shit	ENST00000494292	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
Frame-shit	ENST00000494292	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5CDS-5UTR	ENST00000494292	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5CDS-5UTR	ENST00000494292	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5CDS-intron	ENST00000494292	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000468789	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000468789	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000468789	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000468789	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000468789	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000460814	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000460814	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000460814	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000460814	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000460814	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000433243	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-3CDS	ENST00000433243	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000433243	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-5UTR	ENST00000433243	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
intron-intron	ENST00000433243	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5UTR-3CDS	ENST00000485957	ENST00000446859		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5UTR-3CDS	ENST00000485957	ENST00000316515		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5UTR-5UTR	ENST00000485957	ENST00000522830		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5UTR-5UTR	ENST00000485957	ENST00000522526		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
5UTR-intron	ENST00000485957	ENST00000524327		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MECOM	chr3	169381124	-	LRRC34	chr3	169526533	-
Frame-shit	ENST00000520777	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000520777	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000520777	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000520777	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000520777	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000520777	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000360522	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000360522	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000360522	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000360522	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000360522	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000360522	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378710	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378710	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378710	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378710	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000378710	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000378710	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000357210	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000357210	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000357210	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000357210	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000357210	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000357210	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000355826	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000355826	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000355826	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000355826	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000355826	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000355826	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000518681	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000518681	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000518681	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000518681	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000518681	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000518681	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000505820	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000505820	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000505820	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000505820	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000505820	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000505820	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378712	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378712	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378712	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378712	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000378712	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000378712	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000504599	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000504599	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000504599	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000504599	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000504599	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000504599	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378708	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378708	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378708	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
Frame-shit	ENST00000378708	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-5UTR	ENST00000378708	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
5CDS-intron	ENST00000378708	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
3UTR-3CDS	ENST00000512004	ENST00000257963		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
3UTR-3CDS	ENST00000512004	ENST00000541224		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
3UTR-3CDS	ENST00000512004	ENST00000426655		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
3UTR-3CDS	ENST00000512004	ENST00000415850		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
3UTR-5UTR	ENST00000512004	ENST00000542485		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
3UTR-intron	ENST00000512004	ENST00000563121		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	MIB2	chr1	1559325	+	ACVR1B	chr12	52369049	+
In-frame	ENST00000530878	ENST00000367942		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
5CDS-intron	ENST00000530878	ENST00000476437		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
In-frame	ENST00000361897	ENST00000367942		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
5CDS-intron	ENST00000361897	ENST00000476437		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
intron-3CDS	ENST00000493151	ENST00000367942		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
intron-intron	ENST00000493151	ENST00000476437		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
intron-3CDS	ENST00000454693	ENST00000367942		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
intron-intron	ENST00000454693	ENST00000476437		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	NOS1AP	chr1	162257226	+	ATF6	chr1	161789423	+
Frame-shit	ENST00000446845	ENST00000452631		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
Frame-shit	ENST00000446845	ENST00000346219		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
Frame-shit	ENST00000446845	ENST00000308059		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
5CDS-intron	ENST00000446845	ENST00000469151		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
Frame-shit	ENST00000311806	ENST00000452631		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
Frame-shit	ENST00000311806	ENST00000346219		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
Frame-shit	ENST00000311806	ENST00000308059		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
5CDS-intron	ENST00000311806	ENST00000469151		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000492714	ENST00000452631		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000492714	ENST00000346219		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000492714	ENST00000308059		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
intron-intron	ENST00000492714	ENST00000469151		TCGA	RV	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38232330	+	DLEC1	chr3	38153168	+
5UTR-3CDS	ENST00000403565	ENST00000339464		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
5UTR-3CDS	ENST00000403565	ENST00000409496		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
5UTR-3CDS	ENST00000403565	ENST00000410089		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
5UTR-3CDS	ENST00000403565	ENST00000410058		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000313237	ENST00000339464		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000313237	ENST00000409496		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000313237	ENST00000410089		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000313237	ENST00000410058		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000396103	ENST00000339464		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000396103	ENST00000409496		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000396103	ENST00000410089		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000396103	ENST00000410058		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000404079	ENST00000339464		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000404079	ENST00000409496		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000404079	ENST00000410089		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000404079	ENST00000410058		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000447824	ENST00000339464		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000447824	ENST00000409496		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000447824	ENST00000410089		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
Frame-shit	ENST00000447824	ENST00000410058		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
intron-3CDS	ENST00000462631	ENST00000339464		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
intron-3CDS	ENST00000462631	ENST00000409496		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
intron-3CDS	ENST00000462631	ENST00000410089		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
intron-3CDS	ENST00000462631	ENST00000410058		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	PHF21B	chr22	45404426	-	WNT7B	chr22	46327249	-
intron-3CDS	ENST00000418988	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418988	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418988	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418988	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418988	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000555531	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555531	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555531	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555531	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000555531	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000419365	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000419365	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000419365	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000419365	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000419365	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000524606	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000524606	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000524606	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000524606	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000524606	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000396394	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396394	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396394	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396394	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396394	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
In-frame	ENST00000396393	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396393	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396393	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396393	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000396393	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000530457	ENST00000280326		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000530457	ENST00000503026		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000530457	ENST00000515390		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000530457	ENST00000515676		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
intron-intron	ENST00000530457	ENST00000506600		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	PSMA1	chr11	14526423	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000424085	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000424085	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000424085	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000424085	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
Frame-shit	ENST00000257075	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000257075	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000257075	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000257075	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
Frame-shit	ENST00000373747	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000373747	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000373747	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000373747	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
Frame-shit	ENST00000426105	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000426105	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000426105	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000426105	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
Frame-shit	ENST00000440538	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000440538	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000440538	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000440538	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
In-frame	ENST00000373741	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000373741	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000373741	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000373741	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
Frame-shit	ENST00000423018	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000423018	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000423018	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000423018	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
In-frame	ENST00000373742	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-5UTR	ENST00000373742	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000373742	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
5CDS-intron	ENST00000373742	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
intron-3CDS	ENST00000490546	ENST00000263694		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
intron-5UTR	ENST00000490546	ENST00000489853		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
intron-intron	ENST00000490546	ENST00000373720		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
intron-intron	ENST00000490546	ENST00000446633		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PUM1	chr1	31532051	-	SNRNP40	chr1	31744346	-
Frame-shit	ENST00000535977	ENST00000262305		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000535977	ENST00000457159		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000535977	ENST00000450428		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000539661	ENST00000262305		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000539661	ENST00000457159		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000539661	ENST00000450428		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000538492	ENST00000262305		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000538492	ENST00000457159		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000538492	ENST00000450428		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000248139	ENST00000262305		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000248139	ENST00000457159		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000248139	ENST00000450428		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	RAB40C	chr16	640433	+	RAB11FIP3	chr16	553004	+
Frame-shit	ENST00000337907	ENST00000400906		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	RERE	chr1	8716032	-	SLC2A7	chr1	9079392	-
intron-3CDS	ENST00000377464	ENST00000400906		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	RERE	chr1	8716032	-	SLC2A7	chr1	9079392	-
Frame-shit	ENST00000400907	ENST00000400906		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	RERE	chr1	8716032	-	SLC2A7	chr1	9079392	-
In-frame	ENST00000400908	ENST00000400906		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	RERE	chr1	8716032	-	SLC2A7	chr1	9079392	-
intron-3CDS	ENST00000476556	ENST00000400906		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	RERE	chr1	8716032	-	SLC2A7	chr1	9079392	-
intron-3CDS	ENST00000460659	ENST00000400906		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	RERE	chr1	8716032	-	SLC2A7	chr1	9079392	-
5CDS-intron	ENST00000543953	ENST00000607874		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000543953	ENST00000218147		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000543953	ENST00000359304		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000543953	ENST00000303743		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000543953	ENST00000540052		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000218197	ENST00000607874		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000218197	ENST00000218147		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000218197	ENST00000359304		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000218197	ENST00000303743		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000218197	ENST00000540052		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
3UTR-intron	ENST00000467496	ENST00000607874		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
3UTR-intron	ENST00000467496	ENST00000218147		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
3UTR-intron	ENST00000467496	ENST00000359304		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
3UTR-intron	ENST00000467496	ENST00000303743		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
3UTR-intron	ENST00000467496	ENST00000540052		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000339231	ENST00000607874		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000339231	ENST00000218147		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000339231	ENST00000359304		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000339231	ENST00000303743		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000339231	ENST00000540052		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000361980	ENST00000607874		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000361980	ENST00000218147		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000361980	ENST00000359304		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000361980	ENST00000303743		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000361980	ENST00000540052		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000545805	ENST00000607874		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000545805	ENST00000218147		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000545805	ENST00000359304		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000545805	ENST00000303743		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
5CDS-intron	ENST00000545805	ENST00000540052		TCGA	RV	UCEC	TCGA-PG-A915-01A	SLC25A14	chrX	129484705	+	BCORL1	chrX	129184692	+
In-frame	ENST00000229812	ENST00000530927		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STK38	chr6	36467650	-	GMDS	chr6	1742820	-
In-frame	ENST00000229812	ENST00000380815		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STK38	chr6	36467650	-	GMDS	chr6	1742820	-
5CDS-intron	ENST00000229812	ENST00000467288		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STK38	chr6	36467650	-	GMDS	chr6	1742820	-
5CDS-3UTR	ENST00000263346	ENST00000564878		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000263346	ENST00000393062		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000263346	ENST00000378247		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5CDS-3UTR	ENST00000263346	ENST00000563972		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563406	ENST00000564878		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563406	ENST00000393062		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563406	ENST00000378247		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563406	ENST00000563972		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000263347	ENST00000564878		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000263347	ENST00000393062		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000263347	ENST00000378247		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000263347	ENST00000563972		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	TCF25	chr16	89954125	+	SPIRE2	chr16	89911730	+
5UTR-intron	ENST00000361906	ENST00000445597		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000430092		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000439375		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000400952		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000366849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000366850		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000498360		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
5UTR-intron	ENST00000361906	ENST00000366848		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000445597		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000430092		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000439375		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000400952		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000366849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000366850		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000498360		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000361684	ENST00000366848		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000445597		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000430092		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000439375		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000400952		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000366849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000366850		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000498360		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
intron-intron	ENST00000504337	ENST00000366848		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	TMEM184B	chr22	38668890	-	DNAH14	chr1	225562390	+
Frame-shit	ENST00000415609	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000415609	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000415609	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000415609	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000349511	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000349511	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000349511	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000349511	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000361055	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000361055	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000361055	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000361055	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-3CDS	ENST00000540295	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-3CDS	ENST00000540295	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-intron	ENST00000540295	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-intron	ENST00000540295	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-02A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000359154	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000359154	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000359154	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000359154	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000359154	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000448661	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000448661	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000448661	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000448661	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000448661	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000569174	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000569174	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000569174	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000569174	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000569174	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000356003	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000356003	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000356003	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000356003	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000356003	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
3UTR-3CDS	ENST00000544162	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
3UTR-3CDS	ENST00000544162	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
3UTR-3CDS	ENST00000544162	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
3UTR-5UTR	ENST00000544162	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
3UTR-5UTR	ENST00000544162	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000542271	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000542271	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000542271	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000542271	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
5CDS-5UTR	ENST00000542271	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000568684	ENST00000355257		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000568684	ENST00000215956		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
intron-3CDS	ENST00000568684	ENST00000401959		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000568684	ENST00000463675		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
intron-5UTR	ENST00000568684	ENST00000402458		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	WWP2	chr16	69876023	+	NHP2L1	chr22	42076368	-
Frame-shit	ENST00000311275	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000311275	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000311275	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000311275	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000311275	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000360911	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000360911	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000360911	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000360911	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000360911	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000458360	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000458360	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000458360	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000458360	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000458360	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000262975	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000262975	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000262975	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000262975	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000262975	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000471951	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000471951	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000471951	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000471951	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000471951	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000352431	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000352431	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000352431	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000352431	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000352431	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000396281	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000396281	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000396281	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000396281	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000396281	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000446994	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000446994	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000446994	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000446994	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000446994	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000536340	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000536340	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000536340	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000536340	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000536340	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000355972	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000355972	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000355972	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000355972	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000355972	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000540497	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000540497	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000540497	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000540497	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000540497	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000461685	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000461685	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000461685	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000461685	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000461685	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000372023	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000372023	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000372023	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
In-frame	ENST00000372023	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
5CDS-intron	ENST00000372023	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
intron-3CDS	ENST00000468376	ENST00000359930		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
intron-3CDS	ENST00000468376	ENST00000484875		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
intron-3CDS	ENST00000468376	ENST00000361612		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
intron-3CDS	ENST00000468376	ENST00000467815		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
intron-intron	ENST00000468376	ENST00000478766		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ZMYND8	chr20	45976600	-	SULF2	chr20	46331414	-
Frame-shit	ENST00000587846	ENST00000366175		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000587846	ENST00000407356		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000587846	ENST00000407568		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000587846	ENST00000599812		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000587846	ENST00000342951		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
In-frame	ENST00000587846	ENST00000404580		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
5CDS-5UTR	ENST00000587846	ENST00000401992		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-3CDS	ENST00000590160	ENST00000366175		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-3CDS	ENST00000590160	ENST00000407356		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-3CDS	ENST00000590160	ENST00000407568		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-3CDS	ENST00000590160	ENST00000599812		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-3CDS	ENST00000590160	ENST00000342951		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-3CDS	ENST00000590160	ENST00000404580		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
3UTR-5UTR	ENST00000590160	ENST00000401992		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000187879	ENST00000366175		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000187879	ENST00000407356		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000187879	ENST00000407568		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000187879	ENST00000599812		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000187879	ENST00000342951		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000187879	ENST00000404580		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-5UTR	ENST00000187879	ENST00000401992		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000391960	ENST00000366175		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000391960	ENST00000407356		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000391960	ENST00000407568		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000391960	ENST00000599812		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
Frame-shit	ENST00000391960	ENST00000342951		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
In-frame	ENST00000391960	ENST00000404580		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
5CDS-5UTR	ENST00000391960	ENST00000401992		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF222	chr19	44531642	+	PSG5	chr19	43689299	-
intron-3CDS	ENST00000369252	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000369252	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-intron	ENST00000369252	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000533213	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000533213	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-intron	ENST00000533213	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000277895	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000277895	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-intron	ENST00000277895	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-3CDS	ENST00000369266	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-3CDS	ENST00000369266	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-intron	ENST00000369266	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-3CDS	ENST00000392952	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-3CDS	ENST00000392952	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-intron	ENST00000392952	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-3CDS	ENST00000369253	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-3CDS	ENST00000369253	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
5UTR-intron	ENST00000369253	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000477638	ENST00000255622		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-3CDS	ENST00000477638	ENST00000496514		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
intron-intron	ENST00000477638	ENST00000429163		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	ABLIM1	chr10	116286419	-	PDE6B	chr4	628466	+
In-frame	ENST00000360359	ENST00000357637		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
Frame-shit	ENST00000360359	ENST00000400334		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
5CDS-intron	ENST00000360359	ENST00000593225		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
In-frame	ENST00000535627	ENST00000357637		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
Frame-shit	ENST00000535627	ENST00000400334		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
5CDS-intron	ENST00000535627	ENST00000593225		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
intron-3CDS	ENST00000470698	ENST00000357637		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
intron-3CDS	ENST00000470698	ENST00000400334		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
intron-intron	ENST00000470698	ENST00000593225		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	ANKS1A	chr6	34857376	+	PIGN	chr18	59713212	-
Frame-shit	ENST00000534328	ENST00000262510		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000534328	ENST00000436936		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000534328	ENST00000308149		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
5CDS-intron	ENST00000534328	ENST00000543141		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
5CDS-intron	ENST00000534328	ENST00000539144		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000332231	ENST00000262510		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000332231	ENST00000436936		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000332231	ENST00000308149		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
5CDS-intron	ENST00000332231	ENST00000543141		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
5CDS-intron	ENST00000332231	ENST00000539144		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000448903	ENST00000262510		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000448903	ENST00000436936		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000448903	ENST00000308149		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
5CDS-intron	ENST00000448903	ENST00000543141		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
5CDS-intron	ENST00000448903	ENST00000539144		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
intron-3CDS	ENST00000525891	ENST00000262510		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
intron-3CDS	ENST00000525891	ENST00000436936		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
intron-3CDS	ENST00000525891	ENST00000308149		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
intron-intron	ENST00000525891	ENST00000543141		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
intron-intron	ENST00000525891	ENST00000539144		TCGA	RV	UCEC	TCGA-PG-A914-01A	AP2A2	chr11	959505	+	NLRC5	chr16	57067516	+
Frame-shit	ENST00000287394	ENST00000287387		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
5CDS-5UTR	ENST00000287394	ENST00000523984		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000287394	ENST00000517609		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
5CDS-3UTR	ENST00000287394	ENST00000523356		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
5CDS-intron	ENST00000287394	ENST00000518125		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-3CDS	ENST00000521903	ENST00000287387		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-5UTR	ENST00000521903	ENST00000523984		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-3UTR	ENST00000521903	ENST00000517609		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-3UTR	ENST00000521903	ENST00000523356		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-intron	ENST00000521903	ENST00000518125		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-3CDS	ENST00000534257	ENST00000287387		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-5UTR	ENST00000534257	ENST00000523984		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-3UTR	ENST00000534257	ENST00000517609		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-3UTR	ENST00000534257	ENST00000523356		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
intron-intron	ENST00000534257	ENST00000518125		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	ATAD2	chr8	124408427	-	WDYHV1	chr8	124440164	+
5CDS-5UTR	ENST00000371711	ENST00000289431		TCGA	RV	UCEC	TCGA-EY-A54A-01A	B4GALT5	chr20	48273105	-	SPATA2	chr20	48525129	-
5CDS-5UTR	ENST00000371711	ENST00000422556		TCGA	RV	UCEC	TCGA-EY-A54A-01A	B4GALT5	chr20	48273105	-	SPATA2	chr20	48525129	-
5CDS-intron	ENST00000371711	ENST00000543716		TCGA	RV	UCEC	TCGA-EY-A54A-01A	B4GALT5	chr20	48273105	-	SPATA2	chr20	48525129	-
5CDS-intron	ENST00000421745	ENST00000538303		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	BIRC6	chr2	32582554	+	SLC30A6	chr2	32396356	+
5CDS-intron	ENST00000421745	ENST00000379343		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	BIRC6	chr2	32582554	+	SLC30A6	chr2	32396356	+
5CDS-5UTR	ENST00000421745	ENST00000357055		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	BIRC6	chr2	32582554	+	SLC30A6	chr2	32396356	+
5CDS-5UTR	ENST00000421745	ENST00000435660		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	BIRC6	chr2	32582554	+	SLC30A6	chr2	32396356	+
5CDS-5UTR	ENST00000421745	ENST00000282587		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	BIRC6	chr2	32582554	+	SLC30A6	chr2	32396356	+
5CDS-intron	ENST00000421745	ENST00000406369		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	BIRC6	chr2	32582554	+	SLC30A6	chr2	32396356	+
intron-3CDS	ENST00000392474	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392474	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392474	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392474	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000392474	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000392474	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000538733	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000538733	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000538733	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000538733	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000538733	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000538733	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000337174	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000337174	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000337174	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000337174	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000337174	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000337174	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000347034	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000347034	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000347034	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000347034	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000347034	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000347034	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000324774	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000324774	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000324774	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000324774	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000324774	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000324774	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000545538	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000545538	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000545538	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000545538	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000545538	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000545538	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000412367	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000412367	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000412367	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000412367	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000412367	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000412367	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000404169	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000404169	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000404169	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000404169	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000404169	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000404169	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000402834	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000402834	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000402834	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000402834	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000402834	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000402834	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000446440	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000446440	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000446440	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000446440	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000446440	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000446440	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392473	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392473	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392473	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-3CDS	ENST00000392473	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000392473	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
intron-intron	ENST00000392473	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000535524	ENST00000377069		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000535524	ENST00000542973		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000535524	ENST00000377071		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-3CDS	ENST00000535524	ENST00000536437		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000535524	ENST00000538046		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
5UTR-intron	ENST00000535524	ENST00000543852		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	CAMKK2	chr12	121734441	-	KDM2B	chr12	121868272	-
In-frame	ENST00000337231	ENST00000464356		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	CDR2L	chr17	72995711	+	MEF2D	chr1	156445029	-
In-frame	ENST00000337231	ENST00000348159		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	CDR2L	chr17	72995711	+	MEF2D	chr1	156445029	-
In-frame	ENST00000337231	ENST00000353795		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	CDR2L	chr17	72995711	+	MEF2D	chr1	156445029	-
In-frame	ENST00000337231	ENST00000340875		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	CDR2L	chr17	72995711	+	MEF2D	chr1	156445029	-
In-frame	ENST00000337231	ENST00000368240		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	CDR2L	chr17	72995711	+	MEF2D	chr1	156445029	-
In-frame	ENST00000337231	ENST00000360595		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	CDR2L	chr17	72995711	+	MEF2D	chr1	156445029	-
In-frame	ENST00000262367	ENST00000439268		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
In-frame	ENST00000262367	ENST00000340578		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-intron	ENST00000262367	ENST00000541471		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-intron	ENST00000262367	ENST00000591092		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-intron	ENST00000262367	ENST00000034275		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-5UTR	ENST00000262367	ENST00000591124		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
In-frame	ENST00000382070	ENST00000439268		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
In-frame	ENST00000382070	ENST00000340578		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-intron	ENST00000382070	ENST00000541471		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-intron	ENST00000382070	ENST00000591092		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-intron	ENST00000382070	ENST00000034275		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
5CDS-5UTR	ENST00000382070	ENST00000591124		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5941846	-
Frame-shit	ENST00000328771	ENST00000413379		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
In-frame	ENST00000328771	ENST00000540850		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
Frame-shit	ENST00000328771	ENST00000598840		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
Frame-shit	ENST00000328771	ENST00000270225		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
5CDS-3UTR	ENST00000328771	ENST00000392776		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
intron-3CDS	ENST00000471451	ENST00000413379		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
intron-3CDS	ENST00000471451	ENST00000540850		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
intron-3CDS	ENST00000471451	ENST00000598840		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
intron-3CDS	ENST00000471451	ENST00000270225		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
intron-3UTR	ENST00000471451	ENST00000392776		TCGA	RV	UCEC	TCGA-5B-A90C-01A	DHX34	chr19	47865950	+	SAE1	chr19	47712416	+
intron-5UTR	ENST00000341056	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000341056	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000341056	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000341056	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000341056	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000341056	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000341056	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000341056	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000341056	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000341056	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000341056	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396045	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396045	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396045	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396045	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396045	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000396045	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396045	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396045	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396045	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396045	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396045	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000310758	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000310758	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000310758	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000310758	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000310758	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-3UTR	ENST00000310758	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000310758	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000310758	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000310758	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000310758	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000310758	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396040	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396040	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396040	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396040	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396040	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000396040	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396040	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396040	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000396040	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396040	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000396040	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000442504	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000442504	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000442504	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000442504	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000442504	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000442504	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000442504	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000442504	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000442504	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000442504	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000442504	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000448602	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000448602	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000448602	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000448602	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000448602	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000448602	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000448602	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000448602	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000448602	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000448602	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000448602	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000479447	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000479447	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000479447	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000479447	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000479447	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-3UTR	ENST00000479447	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000479447	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000479447	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-5UTR	ENST00000479447	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000479447	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
intron-intron	ENST00000479447	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ELMO1	chr7	37488278	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000403627	ENST00000335793		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000403627	ENST00000439510		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000403627	ENST00000581014		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000403627	ENST00000582303		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000335793		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000439510		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000405159	ENST00000581014		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000405159	ENST00000582303		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583178	ENST00000335793		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583178	ENST00000439510		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000583178	ENST00000581014		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000583178	ENST00000582303		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000580032	ENST00000335793		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000580032	ENST00000439510		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-5UTR	ENST00000580032	ENST00000581014		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
intron-intron	ENST00000580032	ENST00000582303		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000581110	ENST00000335793		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000581110	ENST00000439510		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000581110	ENST00000581014		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000581110	ENST00000582303		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000335793		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000439510		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-5UTR	ENST00000583024	ENST00000581014		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-intron	ENST00000583024	ENST00000582303		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	FAM104A	chr17	71228225	-	CDC42EP4	chr17	71282751	-
5CDS-3UTR	ENST00000264042	ENST00000489456		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
5CDS-3UTR	ENST00000264042	ENST00000243786		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
5CDS-3UTR	ENST00000545004	ENST00000489456		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
5CDS-3UTR	ENST00000545004	ENST00000243786		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
5CDS-3UTR	ENST00000373287	ENST00000489456		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
5CDS-3UTR	ENST00000373287	ENST00000243786		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
3UTR-3UTR	ENST00000479427	ENST00000489456		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
3UTR-3UTR	ENST00000479427	ENST00000243786		TCGA	RV	UCEC	TCGA-EO-A3AV-01A	FARP2	chr2	242312705	+	INHA	chr2	220439416	+
5CDS-5UTR	ENST00000345617	ENST00000413389		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
5CDS-intron	ENST00000345617	ENST00000326010		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
5CDS-intron	ENST00000345617	ENST00000382760		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
5CDS-intron	ENST00000345617	ENST00000498140		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-5UTR	ENST00000543185	ENST00000413389		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000543185	ENST00000326010		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000543185	ENST00000382760		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000543185	ENST00000498140		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-5UTR	ENST00000541256	ENST00000413389		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000541256	ENST00000326010		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000541256	ENST00000382760		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000541256	ENST00000498140		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-5UTR	ENST00000553145	ENST00000413389		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000553145	ENST00000326010		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000553145	ENST00000382760		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
intron-intron	ENST00000553145	ENST00000498140		TCGA	RV	UCEC	TCGA-BK-A139-02A	HDAC4	chr2	240274373	-	UPB1	chr22	24890077	+
5CDS-5UTR	ENST00000296181	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000296181	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000296181	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000296181	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000296181	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-3UTR	ENST00000296181	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000296181	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000296181	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-5UTR	ENST00000296181	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000296181	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5CDS-intron	ENST00000296181	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000461306	ENST00000406451		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000461306	ENST00000401921		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000461306	ENST00000432645		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000461306	ENST00000441542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000461306	ENST00000417496		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-3UTR	ENST00000461306	ENST00000476135		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000461306	ENST00000405010		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000461306	ENST00000428307		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-5UTR	ENST00000461306	ENST00000406072		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000461306	ENST00000456174		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
5UTR-intron	ENST00000461306	ENST00000524023		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ITGB5	chr3	124487860	-	HDAC9	chr7	18535885	+
In-frame	ENST00000320389	ENST00000402775		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KIF1A	chr2	241697777	-	C2orf54	chr2	241831180	-
In-frame	ENST00000320389	ENST00000307486		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KIF1A	chr2	241697777	-	C2orf54	chr2	241831180	-
In-frame	ENST00000320389	ENST00000388934		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KIF1A	chr2	241697777	-	C2orf54	chr2	241831180	-
In-frame	ENST00000498729	ENST00000402775		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KIF1A	chr2	241697777	-	C2orf54	chr2	241831180	-
In-frame	ENST00000498729	ENST00000307486		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KIF1A	chr2	241697777	-	C2orf54	chr2	241831180	-
In-frame	ENST00000498729	ENST00000388934		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KIF1A	chr2	241697777	-	C2orf54	chr2	241831180	-
In-frame	ENST00000341533	ENST00000343529		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
In-frame	ENST00000341533	ENST00000428762		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
In-frame	ENST00000341533	ENST00000424685		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
5CDS-intron	ENST00000341533	ENST00000473945		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000417955	ENST00000343529		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000417955	ENST00000428762		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000417955	ENST00000424685		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
5CDS-intron	ENST00000417955	ENST00000473945		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000465647	ENST00000343529		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000465647	ENST00000428762		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000465647	ENST00000424685		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
5CDS-intron	ENST00000465647	ENST00000473945		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
In-frame	ENST00000455523	ENST00000343529		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
In-frame	ENST00000455523	ENST00000428762		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
In-frame	ENST00000455523	ENST00000424685		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
5CDS-intron	ENST00000455523	ENST00000473945		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000427257	ENST00000343529		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000427257	ENST00000428762		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
Frame-shit	ENST00000427257	ENST00000424685		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
5CDS-intron	ENST00000427257	ENST00000473945		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	NAPEPLD	chr7	102768930	-	RELN	chr7	103143677	-
5UTR-3CDS	ENST00000311028	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000311028	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000311028	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000311028	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-intron	ENST00000311028	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000395923	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000395923	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000395923	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000395923	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-intron	ENST00000395923	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000220931	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000220931	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000220931	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000220931	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-intron	ENST00000220931	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000521599	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000521599	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000521599	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-3CDS	ENST00000521599	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
5UTR-intron	ENST00000521599	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000522951	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000522951	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000522951	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000522951	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-intron	ENST00000522951	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000519508	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000519508	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000519508	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000519508	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-intron	ENST00000519508	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000521371	ENST00000520539		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000521371	ENST00000220959		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000521371	ENST00000518205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-3CDS	ENST00000521371	ENST00000521922		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
intron-intron	ENST00000521371	ENST00000519528		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NCALD	chr8	103136465	-	UBR5	chr8	103279235	-
In-frame	ENST00000262764	ENST00000292174		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	PGS1	chr17	76395618	+	CXCR5	chr11	118764305	+
In-frame	ENST00000329897	ENST00000292174		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	PGS1	chr17	76395618	+	CXCR5	chr11	118764305	+
3UTR-3CDS	ENST00000588281	ENST00000292174		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	PGS1	chr17	76395618	+	CXCR5	chr11	118764305	+
intron-3CDS	ENST00000358506	ENST00000280326		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000358506	ENST00000503026		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000358506	ENST00000515390		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000358506	ENST00000515676		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000358506	ENST00000506600		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000296122	ENST00000280326		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000296122	ENST00000503026		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000296122	ENST00000515390		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000296122	ENST00000515676		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
intron-intron	ENST00000296122	ENST00000506600		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000395366	ENST00000280326		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395366	ENST00000503026		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395366	ENST00000515390		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395366	ENST00000515676		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000395366	ENST00000506600		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	PPP1CB	chr2	29025806	+	CCT5	chr5	10250033	+
In-frame	ENST00000413379	ENST00000373912		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000413379	ENST00000373909		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000413379	ENST00000313433		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000540850	ENST00000373912		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000540850	ENST00000373909		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000540850	ENST00000313433		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
intron-3CDS	ENST00000598840	ENST00000373912		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
intron-3CDS	ENST00000598840	ENST00000373909		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
intron-3CDS	ENST00000598840	ENST00000313433		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000270225	ENST00000373912		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000270225	ENST00000373909		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000270225	ENST00000313433		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000392776	ENST00000373912		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000392776	ENST00000373909		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
In-frame	ENST00000392776	ENST00000313433		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	RPA2	chr1	28233793	-
intron-3CDS	ENST00000449833	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000449833	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000449833	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000449833	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000449833	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000409161	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000409161	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000409161	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000409161	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000409161	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000423696	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000423696	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000423696	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000423696	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000423696	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000338508	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000338508	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000338508	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000338508	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000338508	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000409530	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000409530	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000409530	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000409530	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000409530	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000449116	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000449116	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000449116	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000449116	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000449116	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000357171	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000357171	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000357171	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000357171	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000357171	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000468619	ENST00000267615		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000468619	ENST00000354313		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-3CDS	ENST00000468619	ENST00000556603		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000468619	ENST00000555495		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
intron-intron	ENST00000468619	ENST00000556954		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70963471	-	ITPK1	chr14	93542964	-
In-frame	ENST00000262435	ENST00000439174		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMURF2	chr17	62657947	-	GNA13	chr17	63014421	-
In-frame	ENST00000262435	ENST00000541118		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMURF2	chr17	62657947	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000578200	ENST00000439174		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMURF2	chr17	62657947	-	GNA13	chr17	63014421	-
intron-3CDS	ENST00000578200	ENST00000541118		TCGA	RV	UCEC	TCGA-PG-A914-01A	SMURF2	chr17	62657947	-	GNA13	chr17	63014421	-
Frame-shit	ENST00000300737	ENST00000361654		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000300737	ENST00000545889		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000300737	ENST00000302528		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000300737	ENST00000358808		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000300737	ENST00000537178		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000300737	ENST00000540338		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
5CDS-intron	ENST00000300737	ENST00000536634		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
5CDS-intron	ENST00000300737	ENST00000540539		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000527651	ENST00000361654		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000527651	ENST00000545889		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000527651	ENST00000302528		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000527651	ENST00000358808		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000527651	ENST00000537178		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
Frame-shit	ENST00000527651	ENST00000540338		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
5CDS-intron	ENST00000527651	ENST00000536634		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
5CDS-intron	ENST00000527651	ENST00000540539		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000527484	ENST00000361654		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000527484	ENST00000545889		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000527484	ENST00000302528		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000527484	ENST00000358808		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000527484	ENST00000537178		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000527484	ENST00000540338		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-intron	ENST00000527484	ENST00000536634		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-intron	ENST00000527484	ENST00000540539		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000533977	ENST00000361654		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000533977	ENST00000545889		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000533977	ENST00000302528		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000533977	ENST00000358808		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000533977	ENST00000537178		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-3CDS	ENST00000533977	ENST00000540338		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-intron	ENST00000533977	ENST00000536634		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
intron-intron	ENST00000533977	ENST00000540539		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	STIM1	chr11	3877639	+	CLIP1	chr12	122773088	-
5CDS-5UTR	ENST00000300737	ENST00000355897		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
5CDS-3UTR	ENST00000300737	ENST00000482813		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
5CDS-5UTR	ENST00000527651	ENST00000355897		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
5CDS-3UTR	ENST00000527651	ENST00000482813		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
intron-5UTR	ENST00000527484	ENST00000355897		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
intron-3UTR	ENST00000527484	ENST00000482813		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
intron-5UTR	ENST00000533977	ENST00000355897		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
intron-3UTR	ENST00000533977	ENST00000482813		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169756703	+
intron-3CDS	ENST00000360448	ENST00000392185		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	SYTL3	chr6	159134910	+	SNX9	chr6	158342563	+
In-frame	ENST00000297239	ENST00000392185		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	SYTL3	chr6	159134910	+	SNX9	chr6	158342563	+
intron-3CDS	ENST00000367081	ENST00000392185		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	SYTL3	chr6	159134910	+	SNX9	chr6	158342563	+
intron-3CDS	ENST00000469735	ENST00000392185		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	SYTL3	chr6	159134910	+	SNX9	chr6	158342563	+
intron-3CDS	ENST00000395211	ENST00000355295		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-3CDS	ENST00000395211	ENST00000422139		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-5UTR	ENST00000395211	ENST00000540902		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-intron	ENST00000395211	ENST00000492428		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
5UTR-3CDS	ENST00000259365	ENST00000355295		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
5UTR-3CDS	ENST00000259365	ENST00000422139		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
5UTR-5UTR	ENST00000259365	ENST00000540902		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
5UTR-intron	ENST00000259365	ENST00000492428		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-3CDS	ENST00000375175	ENST00000355295		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-3CDS	ENST00000375175	ENST00000422139		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-5UTR	ENST00000375175	ENST00000540902		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
intron-intron	ENST00000375175	ENST00000492428		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TMOD1	chr9	100264085	+	TDRD7	chr9	100234575	+
In-frame	ENST00000241261	ENST00000475381		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
In-frame	ENST00000241261	ENST00000273512		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
In-frame	ENST00000241261	ENST00000538775		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000241261	ENST00000543711		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
In-frame	ENST00000420541	ENST00000475381		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
In-frame	ENST00000420541	ENST00000273512		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
In-frame	ENST00000420541	ENST00000538775		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
5CDS-intron	ENST00000420541	ENST00000543711		TCGA	RV	UCEC	TCGA-KP-A3W1-01A	TNFSF10	chr3	172241043	-	NCEH1	chr3	172365904	-
Frame-shit	ENST00000340513	ENST00000376309		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	TPX2	chr20	30359485	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000300403	ENST00000376309		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	TPX2	chr20	30359485	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000293218	ENST00000579662		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000293218	ENST00000339591		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000293218	ENST00000200181		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000293218	ENST00000450894		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000293218	ENST00000449880		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
5CDS-intron	ENST00000293218	ENST00000584558		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000589666	ENST00000579662		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000589666	ENST00000339591		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000589666	ENST00000200181		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000589666	ENST00000450894		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000589666	ENST00000449880		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
5CDS-intron	ENST00000589666	ENST00000584558		TCGA	RV	UCEC	TCGA-BK-A139-02A	UNK	chr17	73781065	+	ITGB4	chr17	73744922	+
Frame-shit	ENST00000293218	ENST00000269391		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
Frame-shit	ENST00000293218	ENST00000319945		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
5CDS-intron	ENST00000293218	ENST00000589912		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
5CDS-intron	ENST00000293218	ENST00000592271		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
Frame-shit	ENST00000589666	ENST00000269391		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
Frame-shit	ENST00000589666	ENST00000319945		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
5CDS-intron	ENST00000589666	ENST00000589912		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
5CDS-intron	ENST00000589666	ENST00000592271		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	UNK	chr17	73781065	+	RNF157	chr17	74169871	-
intron-intron	ENST00000341885	ENST00000469100		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
intron-intron	ENST00000341885	ENST00000373477		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
5CDS-intron	ENST00000468695	ENST00000469100		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
5CDS-intron	ENST00000468695	ENST00000373477		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
intron-intron	ENST00000492007	ENST00000469100		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
intron-intron	ENST00000492007	ENST00000373477		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
5CDS-intron	ENST00000373501	ENST00000469100		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
5CDS-intron	ENST00000373501	ENST00000373477		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	ZBTB8OS	chr1	33099246	-	YARS	chr1	33252676	-
In-frame	ENST00000398457	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398457	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398457	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000398457	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
3UTR-3CDS	ENST00000462050	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
3UTR-3CDS	ENST00000462050	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
3UTR-3CDS	ENST00000462050	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
3UTR-intron	ENST00000462050	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000347800	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000347800	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000347800	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000347800	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398449	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398449	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398449	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000398449	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000361802	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000361802	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000361802	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000361802	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000343687	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000343687	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000343687	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000343687	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398437	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398437	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000398437	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000398437	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000340588	ENST00000328735		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000340588	ENST00000330333		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
In-frame	ENST00000340588	ENST00000347667		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5CDS-intron	ENST00000340588	ENST00000466122		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	ABCG1	chr21	43708422	+	BACE2	chr21	42598193	+
5UTR-5UTR	ENST00000392038	ENST00000592694		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000337679		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000392124		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000339413		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000592246		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000329420		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000591784		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000591755		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000392038	ENST00000587361		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000592694		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000337679		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000392124		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000339413		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000592246		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000329420		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000591784		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000591755		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000424901	ENST00000587361		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000592694		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000337679		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000392124		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000339413		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000592246		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000329420		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000591784		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000591755		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000311278	ENST00000587361		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000592694		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000337679		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000392124		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000339413		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000592246		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000329420		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000591784		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000591755		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
5UTR-5UTR	ENST00000579047	ENST00000587361		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000592694		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000337679		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000392124		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000339413		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000592246		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000329420		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000591784		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000591755		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
intron-5UTR	ENST00000581582	ENST00000587361		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	AKT2	chr19	40791088	-	YIF1B	chr19	38800283	-
Frame-shit	ENST00000344773	ENST00000515877		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000344773	ENST00000503738		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000344773	ENST00000458167		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000344773	ENST00000424214		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000344773	ENST00000407583		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000344773	ENST00000264718		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000344773	ENST00000610189		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
5CDS-intron	ENST00000344773	ENST00000461249		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379624	ENST00000515877		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379624	ENST00000503738		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000379624	ENST00000458167		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000379624	ENST00000424214		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379624	ENST00000407583		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379624	ENST00000264718		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379624	ENST00000610189		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
5CDS-intron	ENST00000379624	ENST00000461249		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000342045	ENST00000515877		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000342045	ENST00000503738		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000342045	ENST00000458167		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000342045	ENST00000424214		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000342045	ENST00000407583		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000342045	ENST00000264718		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000342045	ENST00000610189		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
5CDS-intron	ENST00000342045	ENST00000461249		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379632	ENST00000515877		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379632	ENST00000503738		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000379632	ENST00000458167		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000379632	ENST00000424214		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379632	ENST00000407583		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379632	ENST00000264718		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000379632	ENST00000610189		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
5CDS-intron	ENST00000379632	ENST00000461249		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000361704	ENST00000515877		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000361704	ENST00000503738		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000361704	ENST00000458167		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
In-frame	ENST00000361704	ENST00000424214		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000361704	ENST00000407583		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000361704	ENST00000264718		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000361704	ENST00000610189		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
5CDS-intron	ENST00000361704	ENST00000461249		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000515877		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000503738		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000458167		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000424214		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000407583		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000264718		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-3CDS	ENST00000603461	ENST00000610189		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
3UTR-intron	ENST00000603461	ENST00000461249		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	BRE	chr2	28152775	+	GPN1	chr2	27872982	+
Frame-shit	ENST00000271332	ENST00000369939		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CELSR2	chr1	109805066	+	KIAA1324	chr1	109704516	+
Frame-shit	ENST00000271332	ENST00000529753		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CELSR2	chr1	109805066	+	KIAA1324	chr1	109704516	+
5CDS-intron	ENST00000271332	ENST00000369938		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CELSR2	chr1	109805066	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000498157	ENST00000369939		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CELSR2	chr1	109805066	+	KIAA1324	chr1	109704516	+
intron-3CDS	ENST00000498157	ENST00000529753		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CELSR2	chr1	109805066	+	KIAA1324	chr1	109704516	+
intron-intron	ENST00000498157	ENST00000369938		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CELSR2	chr1	109805066	+	KIAA1324	chr1	109704516	+
Frame-shit	ENST00000398519	ENST00000306729		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000398519	ENST00000306739		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000398519	ENST00000580534		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-intron	ENST00000398519	ENST00000581647		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-3UTR	ENST00000398519	ENST00000582404		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000314028	ENST00000306729		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000314028	ENST00000306739		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000314028	ENST00000580534		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-intron	ENST00000314028	ENST00000581647		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-3UTR	ENST00000314028	ENST00000582404		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000392334	ENST00000306729		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000392334	ENST00000306739		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
Frame-shit	ENST00000392334	ENST00000580534		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-intron	ENST00000392334	ENST00000581647		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-3UTR	ENST00000392334	ENST00000582404		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
intron-3CDS	ENST00000578904	ENST00000306729		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
intron-3CDS	ENST00000578904	ENST00000306739		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
intron-3CDS	ENST00000578904	ENST00000580534		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
intron-intron	ENST00000578904	ENST00000581647		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
intron-3UTR	ENST00000578904	ENST00000582404		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	CSNK1D	chr17	80231182	-	ASPSCR1	chr17	79974817	+
5CDS-5UTR	ENST00000452510	ENST00000323760		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000452510	ENST00000357274		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000452510	ENST00000348983		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000452510	ENST00000356505		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000452510	ENST00000415130		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000452510	ENST00000513970		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-intron	ENST00000452510	ENST00000514555		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000354283	ENST00000323760		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000354283	ENST00000357274		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000354283	ENST00000348983		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000354283	ENST00000356505		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000354283	ENST00000415130		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-5UTR	ENST00000354283	ENST00000513970		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-intron	ENST00000354283	ENST00000514555		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-5UTR	ENST00000509178	ENST00000323760		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-5UTR	ENST00000509178	ENST00000357274		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-5UTR	ENST00000509178	ENST00000348983		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-5UTR	ENST00000509178	ENST00000356505		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-5UTR	ENST00000509178	ENST00000415130		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-5UTR	ENST00000509178	ENST00000513970		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
intron-intron	ENST00000509178	ENST00000514555		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666907	-
5CDS-3UTR	ENST00000403681	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000403681	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000403681	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000541363	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000541363	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000541363	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000393577	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000393577	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000393577	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000393578	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000393578	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000393578	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000425208	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000425208	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000425208	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000536545	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000536545	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000536545	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000354636	ENST00000593699		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000354636	ENST00000372499		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000354636	ENST00000496424		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78084159	+
Frame-shit	ENST00000312239	ENST00000264211		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000312239	ENST00000400422		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000312239	ENST00000602326		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000312239	ENST00000374935		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000312239	ENST00000374937		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000312239	ENST00000536266		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000312239	ENST00000374933		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000312239	ENST00000544689		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000312239	ENST00000356916		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000312239	ENST00000374927		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000312239	ENST00000537738		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000487117	ENST00000264211		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000487117	ENST00000400422		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000487117	ENST00000602326		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000487117	ENST00000374935		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000487117	ENST00000374937		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000487117	ENST00000536266		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000487117	ENST00000374933		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000487117	ENST00000544689		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000487117	ENST00000356916		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000487117	ENST00000374927		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000487117	ENST00000537738		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000375000	ENST00000264211		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000375000	ENST00000400422		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000375000	ENST00000602326		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000375000	ENST00000374935		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000375000	ENST00000374937		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-3CDS	ENST00000375000	ENST00000536266		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000375000	ENST00000374933		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000375000	ENST00000544689		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000375000	ENST00000356916		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000375000	ENST00000374927		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
intron-intron	ENST00000375000	ENST00000537738		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000375003	ENST00000264211		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000375003	ENST00000400422		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000375003	ENST00000602326		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000375003	ENST00000374935		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000375003	ENST00000374937		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
Frame-shit	ENST00000375003	ENST00000536266		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000375003	ENST00000374933		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000375003	ENST00000544689		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000375003	ENST00000356916		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000375003	ENST00000374927		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
5CDS-intron	ENST00000375003	ENST00000537738		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	HP1BP3	chr1	21074037	-	EIF4G3	chr1	21137377	-
In-frame	ENST00000493293	ENST00000294868		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
In-frame	ENST00000493293	ENST00000287713		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
5CDS-intron	ENST00000493293	ENST00000473046		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
In-frame	ENST00000264144	ENST00000294868		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
In-frame	ENST00000264144	ENST00000287713		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
5CDS-intron	ENST00000264144	ENST00000473046		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
intron-3CDS	ENST00000461729	ENST00000294868		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
intron-3CDS	ENST00000461729	ENST00000287713		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
intron-intron	ENST00000461729	ENST00000473046		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	LAMC2	chr1	183155566	+	NMNAT2	chr1	183262928	-
5UTR-5UTR	ENST00000338483	ENST00000409638		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000338483	ENST00000396738		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000338483	ENST00000409516		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000338483	ENST00000409260		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000338483	ENST00000486813		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000338483	ENST00000409743		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538999	ENST00000409638		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538999	ENST00000396738		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538999	ENST00000409516		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538999	ENST00000409260		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538999	ENST00000486813		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538999	ENST00000409743		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538320	ENST00000409638		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538320	ENST00000396738		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538320	ENST00000409516		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538320	ENST00000409260		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538320	ENST00000486813		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
5UTR-5UTR	ENST00000538320	ENST00000409743		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000426621	ENST00000409638		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000426621	ENST00000396738		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000426621	ENST00000409516		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000426621	ENST00000409260		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000426621	ENST00000486813		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000426621	ENST00000409743		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000407965	ENST00000409638		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000407965	ENST00000396738		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000407965	ENST00000409516		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000407965	ENST00000409260		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000407965	ENST00000486813		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
intron-5UTR	ENST00000407965	ENST00000409743		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	MAFF	chr22	38598219	+	STK16	chr2	220110618	+
Frame-shit	ENST00000261839	ENST00000253669		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
Frame-shit	ENST00000261839	ENST00000448593		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
Frame-shit	ENST00000261839	ENST00000593360		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
3UTR-3CDS	ENST00000443683	ENST00000253669		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
3UTR-3CDS	ENST00000443683	ENST00000448593		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
3UTR-3CDS	ENST00000443683	ENST00000593360		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
intron-3CDS	ENST00000541028	ENST00000253669		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
intron-3CDS	ENST00000541028	ENST00000448593		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
intron-3CDS	ENST00000541028	ENST00000593360		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	MYO5C	chr15	52536553	-	HAUS8	chr19	17163776	-
5UTR-3CDS	ENST00000356056	ENST00000392562		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000356056	ENST00000316804		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000356056	ENST00000316615		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000356056	ENST00000392563		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000356056	ENST00000392564		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000356056	ENST00000578961		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-intron	ENST00000356056	ENST00000462266		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000444904	ENST00000392562		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000444904	ENST00000316804		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000444904	ENST00000316615		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000444904	ENST00000392563		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000444904	ENST00000392564		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000444904	ENST00000578961		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-intron	ENST00000444904	ENST00000462266		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000424560	ENST00000392562		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000424560	ENST00000316804		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000424560	ENST00000316615		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000424560	ENST00000392563		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000424560	ENST00000392564		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000424560	ENST00000578961		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-intron	ENST00000424560	ENST00000462266		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000564571	ENST00000392562		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000564571	ENST00000316804		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000564571	ENST00000316615		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000564571	ENST00000392563		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000564571	ENST00000392564		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000564571	ENST00000578961		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-intron	ENST00000564571	ENST00000462266		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000566885	ENST00000392562		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000566885	ENST00000316804		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000566885	ENST00000316615		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000566885	ENST00000392563		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000566885	ENST00000392564		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-3CDS	ENST00000566885	ENST00000578961		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-intron	ENST00000566885	ENST00000462266		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-3CDS	ENST00000563542	ENST00000392562		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-3CDS	ENST00000563542	ENST00000316804		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-3CDS	ENST00000563542	ENST00000316615		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-3CDS	ENST00000563542	ENST00000392563		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-3CDS	ENST00000563542	ENST00000392564		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-3CDS	ENST00000563542	ENST00000578961		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
intron-intron	ENST00000563542	ENST00000462266		TCGA	RV	UCEC	TCGA-EY-A210-01A	MYO9A	chr15	72410021	-	GRB2	chr17	73328878	-
5UTR-5UTR	ENST00000341724	ENST00000373731		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-intron	ENST00000341724	ENST00000474988		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000341724	ENST00000544295		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000341724	ENST00000449081		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000341724	ENST00000536244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000372004	ENST00000373731		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-intron	ENST00000372004	ENST00000474988		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000372004	ENST00000544295		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000372004	ENST00000449081		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000372004	ENST00000536244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371998	ENST00000373731		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-intron	ENST00000371998	ENST00000474988		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371998	ENST00000544295		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371998	ENST00000449081		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371998	ENST00000536244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371997	ENST00000373731		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-intron	ENST00000371997	ENST00000474988		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371997	ENST00000544295		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371997	ENST00000449081		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5UTR-5UTR	ENST00000371997	ENST00000536244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000497292	ENST00000373731		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
intron-intron	ENST00000497292	ENST00000474988		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000497292	ENST00000544295		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000497292	ENST00000449081		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
intron-5UTR	ENST00000497292	ENST00000536244		TCGA	RV	UCEC	TCGA-B5-A3FB-01A	NCOA3	chr20	46130763	+	KCTD20	chr6	36437829	+
5CDS-5UTR	ENST00000356175	ENST00000379520		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000356175	ENST00000379519		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000356175	ENST00000261353		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000356175	ENST00000402003		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000356175	ENST00000402708		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-3UTR	ENST00000356175	ENST00000495673		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000358273	ENST00000379520		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000358273	ENST00000379519		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000358273	ENST00000261353		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000358273	ENST00000402003		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000358273	ENST00000402708		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-3UTR	ENST00000358273	ENST00000495673		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000431387	ENST00000379520		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000431387	ENST00000379519		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000431387	ENST00000261353		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000431387	ENST00000402003		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-5UTR	ENST00000431387	ENST00000402708		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
5CDS-3UTR	ENST00000431387	ENST00000495673		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000581113	ENST00000379520		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000581113	ENST00000379519		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000581113	ENST00000261353		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000581113	ENST00000402003		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000581113	ENST00000402708		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-3UTR	ENST00000581113	ENST00000495673		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000417592	ENST00000379520		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000417592	ENST00000379519		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000417592	ENST00000261353		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000417592	ENST00000402003		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000417592	ENST00000402708		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-3UTR	ENST00000417592	ENST00000495673		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000444181	ENST00000379520		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000444181	ENST00000379519		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000444181	ENST00000261353		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000444181	ENST00000402003		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-5UTR	ENST00000444181	ENST00000402708		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
intron-3UTR	ENST00000444181	ENST00000495673		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	NF1	chr17	29528503	+	YPEL5	chr2	30379494	+
3UTR-3CDS	ENST00000331497	ENST00000268154		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	NGRN	chr15	90809630	+	ZNF710	chr15	90622892	+
3UTR-intron	ENST00000331497	ENST00000560908		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	NGRN	chr15	90809630	+	ZNF710	chr15	90622892	+
In-frame	ENST00000379095	ENST00000268154		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	NGRN	chr15	90809630	+	ZNF710	chr15	90622892	+
5CDS-intron	ENST00000379095	ENST00000560908		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	NGRN	chr15	90809630	+	ZNF710	chr15	90622892	+
In-frame	ENST00000296484	ENST00000305533		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52265555	-
In-frame	ENST00000296484	ENST00000499914		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52265555	-
In-frame	ENST00000394970	ENST00000305533		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52265555	-
In-frame	ENST00000394970	ENST00000499914		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52265555	-
Frame-shit	ENST00000474012	ENST00000305533		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52265555	-
Frame-shit	ENST00000474012	ENST00000499914		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52265555	-
In-frame	ENST00000426838	ENST00000396441		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
In-frame	ENST00000426838	ENST00000389707		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
In-frame	ENST00000426838	ENST00000401424		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000426838	ENST00000389708		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000426838	ENST00000361003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000426838	ENST00000403290		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000426838	ENST00000403510		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000426838	ENST00000403482		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-intron	ENST00000426838	ENST00000497429		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
In-frame	ENST00000282030	ENST00000396441		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
In-frame	ENST00000282030	ENST00000389707		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
In-frame	ENST00000282030	ENST00000401424		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000282030	ENST00000389708		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000282030	ENST00000361003		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000282030	ENST00000403290		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000282030	ENST00000403510		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-3UTR	ENST00000282030	ENST00000403482		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-intron	ENST00000282030	ENST00000497429		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	SETBP1	chr18	42449248	+	ARNTL	chr11	13407236	+
5CDS-5UTR	ENST00000377897	ENST00000568305		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000377897	ENST00000374954		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000294179	ENST00000568305		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000294179	ENST00000374954		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000394690	ENST00000568305		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000394690	ENST00000374954		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000541317	ENST00000568305		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
5CDS-5UTR	ENST00000541317	ENST00000374954		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	STX5	chr11	62591638	-	ASIP	chr20	32848171	+
intron-3CDS	ENST00000361236	ENST00000279441		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM123	chr11	102319543	-	MMP10	chr11	102650092	-
Frame-shit	ENST00000398136	ENST00000279441		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM123	chr11	102319543	-	MMP10	chr11	102650092	-
5UTR-3CDS	ENST00000532161	ENST00000279441		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM123	chr11	102319543	-	MMP10	chr11	102650092	-
5UTR-3CDS	ENST00000525577	ENST00000279441		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM123	chr11	102319543	-	MMP10	chr11	102650092	-
Frame-shit	ENST00000264771	ENST00000311637		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000264771	ENST00000338821		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000264771	ENST00000402822		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
5CDS-intron	ENST00000264771	ENST00000477492		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000515740	ENST00000311637		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000515740	ENST00000338821		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000515740	ENST00000402822		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
5CDS-intron	ENST00000515740	ENST00000477492		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000508204	ENST00000311637		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000508204	ENST00000338821		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
Frame-shit	ENST00000508204	ENST00000402822		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
5CDS-intron	ENST00000508204	ENST00000477492		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
intron-3CDS	ENST00000504180	ENST00000311637		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
intron-3CDS	ENST00000504180	ENST00000338821		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
intron-3CDS	ENST00000504180	ENST00000402822		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
intron-intron	ENST00000504180	ENST00000477492		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TMEM175	chr4	949678	+	ATP9A	chr20	50217886	-
intron-3CDS	ENST00000476901	ENST00000454366		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	TRMU	chr22	46733841	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000290846	ENST00000454366		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	TRMU	chr22	46733841	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000381019	ENST00000454366		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	TRMU	chr22	46733841	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000424260	ENST00000454366		TCGA	RV	UCEC	TCGA-D1-A3DH-01A	TRMU	chr22	46733841	+	GTSE1	chr22	46704047	+
Frame-shit	ENST00000367094	ENST00000367121		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367094	ENST00000367122		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367094	ENST00000355585		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367094	ENST00000449859		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
5CDS-intron	ENST00000367094	ENST00000367112		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367097	ENST00000367121		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367097	ENST00000367122		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367097	ENST00000355585		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000367097	ENST00000449859		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
5CDS-intron	ENST00000367097	ENST00000367112		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	TULP4	chr6	158735300	+	SYNJ2	chr6	158454487	+
Frame-shit	ENST00000587557	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
Frame-shit	ENST00000587557	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
Frame-shit	ENST00000587557	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
Frame-shit	ENST00000587557	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
Frame-shit	ENST00000587557	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5CDS-5UTR	ENST00000587557	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5CDS-5UTR	ENST00000587557	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5CDS-5UTR	ENST00000587557	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5CDS-intron	ENST00000587557	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5CDS-intron	ENST00000587557	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5CDS-intron	ENST00000587557	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592504	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592504	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592504	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592504	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592504	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000592504	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000592504	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000592504	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000592504	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000592504	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000592504	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000585352	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000585352	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000585352	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000585352	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000585352	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000585352	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000585352	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000585352	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000585352	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000585352	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000585352	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000317221	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000317221	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000317221	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000317221	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000317221	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000317221	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000317221	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000317221	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000317221	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000317221	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000317221	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000586255	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000586255	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000586255	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000586255	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000586255	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000586255	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000586255	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000586255	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000586255	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000586255	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000586255	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592896	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592896	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592896	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592896	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000592896	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000592896	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000592896	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000592896	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000592896	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000592896	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000592896	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000603380	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000603380	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000603380	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000603380	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000603380	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000603380	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000603380	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000603380	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000603380	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000603380	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000603380	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000538743	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000538743	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000538743	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000538743	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000538743	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000538743	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000538743	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000538743	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000538743	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000538743	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000538743	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000393883	ENST00000300971		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000393883	ENST00000595684		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000393883	ENST00000352727		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000393883	ENST00000332386		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-3CDS	ENST00000393883	ENST00000335393		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000393883	ENST00000601861		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000393883	ENST00000599164		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-5UTR	ENST00000393883	ENST00000597887		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000393883	ENST00000449408		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000393883	ENST00000600871		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
5UTR-intron	ENST00000393883	ENST00000599124		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	ZNF559	chr19	9435456	+	FAM129C	chr19	17638078	+
Frame-shit	ENST00000193403	ENST00000341516		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000193403	ENST00000554215		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000193403	ENST00000556847		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000193403	ENST00000557386		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000193403	ENST00000389997		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000193403	ENST00000553293		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000394419	ENST00000341516		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000394419	ENST00000554215		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000394419	ENST00000556847		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000394419	ENST00000557386		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000394419	ENST00000389997		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000394419	ENST00000553293		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000438964	ENST00000341516		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000438964	ENST00000554215		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000438964	ENST00000556847		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000438964	ENST00000557386		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000438964	ENST00000389997		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000438964	ENST00000553293		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000376839	ENST00000341516		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000376839	ENST00000554215		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000376839	ENST00000556847		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000376839	ENST00000557386		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-intron	ENST00000376839	ENST00000389997		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-intron	ENST00000376839	ENST00000553293		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000538545	ENST00000341516		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000538545	ENST00000554215		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000538545	ENST00000556847		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000538545	ENST00000557386		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000538545	ENST00000389997		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
5CDS-intron	ENST00000538545	ENST00000553293		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000554508	ENST00000341516		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000554508	ENST00000554215		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000554508	ENST00000556847		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-3CDS	ENST00000554508	ENST00000557386		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-intron	ENST00000554508	ENST00000389997		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
intron-intron	ENST00000554508	ENST00000553293		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ACTN1	chr14	69445669	-	DCAF5	chr14	69529228	-
Frame-shit	ENST00000294016	ENST00000576634		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
Frame-shit	ENST00000294016	ENST00000341633		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
Frame-shit	ENST00000294016	ENST00000417763		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
Frame-shit	ENST00000294016	ENST00000571025		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
Frame-shit	ENST00000294016	ENST00000572600		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
5CDS-5UTR	ENST00000294016	ENST00000445795		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
intron-3CDS	ENST00000571889	ENST00000576634		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
intron-3CDS	ENST00000571889	ENST00000341633		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
intron-3CDS	ENST00000571889	ENST00000417763		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
intron-3CDS	ENST00000571889	ENST00000571025		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
intron-3CDS	ENST00000571889	ENST00000572600		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
intron-5UTR	ENST00000571889	ENST00000445795		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3573158	+
In-frame	ENST00000306065	ENST00000244137		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
In-frame	ENST00000306065	ENST00000397032		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
In-frame	ENST00000306065	ENST00000436370		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
5CDS-intron	ENST00000306065	ENST00000591968		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
intron-3CDS	ENST00000587352	ENST00000244137		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
intron-3CDS	ENST00000587352	ENST00000397032		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
intron-3CDS	ENST00000587352	ENST00000436370		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
intron-intron	ENST00000587352	ENST00000591968		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ANKRD27	chr19	33118989	-	PEPD	chr19	33902655	-
5CDS-intron	ENST00000401084	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000401084	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000401084	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-3UTR	ENST00000401084	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-intron	ENST00000264203	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-intron	ENST00000264203	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-intron	ENST00000264203	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-3UTR	ENST00000264203	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000375142	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000375142	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000375142	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-3UTR	ENST00000375142	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-intron	ENST00000433834	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-intron	ENST00000433834	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-intron	ENST00000433834	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-3UTR	ENST00000433834	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000264202	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000264202	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-intron	ENST00000264202	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-3UTR	ENST00000264202	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-intron	ENST00000482808	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-intron	ENST00000482808	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-intron	ENST00000482808	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5UTR-3UTR	ENST00000482808	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-intron	ENST00000375144	ENST00000602296		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-intron	ENST00000375144	ENST00000602787		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-intron	ENST00000375144	ENST00000309048		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
intron-3UTR	ENST00000375144	ENST00000462462		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	CAPZB	chr1	19811930	-	APITD1	chr1	10500404	+
5CDS-5UTR	ENST00000307471	ENST00000254977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000307471	ENST00000399006		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000307471	ENST00000405977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000307471	ENST00000378226		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-intron	ENST00000307471	ENST00000488503		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000409765	ENST00000254977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000409765	ENST00000399006		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000409765	ENST00000405977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000409765	ENST00000378226		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-intron	ENST00000409765	ENST00000488503		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000410069	ENST00000254977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000410069	ENST00000399006		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000410069	ENST00000405977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000410069	ENST00000378226		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-intron	ENST00000410069	ENST00000488503		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000486109	ENST00000254977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000486109	ENST00000399006		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000486109	ENST00000405977		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-5UTR	ENST00000486109	ENST00000378226		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
5CDS-intron	ENST00000486109	ENST00000488503		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	CCDC126	chr7	23651172	+	BTBD3	chr20	11898982	+
In-frame	ENST00000263102	ENST00000280772		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61842495	-
In-frame	ENST00000263102	ENST00000373827		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61842495	-
In-frame	ENST00000263102	ENST00000355288		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61842495	-
In-frame	ENST00000263102	ENST00000503366		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61842495	-
5CDS-intron	ENST00000263102	ENST00000510382		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61842495	-
5CDS-intron	ENST00000263102	ENST00000460468		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	CCDC6	chr10	61665880	-	ANK3	chr10	61842495	-
5UTR-3CDS	ENST00000260327	ENST00000375592		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
5UTR-5UTR	ENST00000260327	ENST00000478089		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
5UTR-3CDS	ENST00000396780	ENST00000375592		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
5UTR-5UTR	ENST00000396780	ENST00000478089		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
intron-3CDS	ENST00000558966	ENST00000375592		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
intron-5UTR	ENST00000558966	ENST00000478089		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
intron-3CDS	ENST00000558373	ENST00000375592		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
intron-5UTR	ENST00000558373	ENST00000478089		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
intron-3CDS	ENST00000561189	ENST00000375592		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
intron-5UTR	ENST00000561189	ENST00000478089		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	CTDSPL2	chr15	44719970	+	FBXO42	chr1	16621412	-
In-frame	ENST00000355078	ENST00000506684		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000355078	ENST00000398754		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000302763	ENST00000506684		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000302763	ENST00000398754		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000518825	ENST00000506684		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000518825	ENST00000398754		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
3UTR-3CDS	ENST00000520400	ENST00000506684		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
3UTR-3CDS	ENST00000520400	ENST00000398754		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000540387	ENST00000506684		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
In-frame	ENST00000540387	ENST00000398754		TCGA	RV	UCEC	TCGA-PG-A914-01A	CTNNA1	chr5	138223331	+	WNT8A	chr5	137420187	+
Frame-shit	ENST00000452510	ENST00000398844		TCGA	RV	UCEC	TCGA-EY-A54A-01A	DDX46	chr5	134126242	+	SEC24A	chr5	134010305	+
Frame-shit	ENST00000452510	ENST00000322887		TCGA	RV	UCEC	TCGA-EY-A54A-01A	DDX46	chr5	134126242	+	SEC24A	chr5	134010305	+
Frame-shit	ENST00000354283	ENST00000398844		TCGA	RV	UCEC	TCGA-EY-A54A-01A	DDX46	chr5	134126242	+	SEC24A	chr5	134010305	+
Frame-shit	ENST00000354283	ENST00000322887		TCGA	RV	UCEC	TCGA-EY-A54A-01A	DDX46	chr5	134126242	+	SEC24A	chr5	134010305	+
3UTR-3CDS	ENST00000509178	ENST00000398844		TCGA	RV	UCEC	TCGA-EY-A54A-01A	DDX46	chr5	134126242	+	SEC24A	chr5	134010305	+
3UTR-3CDS	ENST00000509178	ENST00000322887		TCGA	RV	UCEC	TCGA-EY-A54A-01A	DDX46	chr5	134126242	+	SEC24A	chr5	134010305	+
Frame-shit	ENST00000256497	ENST00000302640		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000256497	ENST00000354582		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000256497	ENST00000423119		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
In-frame	ENST00000256497	ENST00000456211		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
In-frame	ENST00000256497	ENST00000357086		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
Frame-shit	ENST00000256497	ENST00000544951		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
In-frame	ENST00000256497	ENST00000443694		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5CDS-3UTR	ENST00000256497	ENST00000463980		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000302640		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000354582		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000423119		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000456211		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000357086		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000544951		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3CDS	ENST00000445686	ENST00000443694		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
5UTR-3UTR	ENST00000445686	ENST00000463980		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	EDEM1	chr3	5236966	+	ITPR1	chr3	4887823	+
In-frame	ENST00000357410	ENST00000359271		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
5CDS-intron	ENST00000357410	ENST00000486000		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
In-frame	ENST00000327619	ENST00000359271		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
5CDS-intron	ENST00000327619	ENST00000486000		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
intron-3CDS	ENST00000497428	ENST00000359271		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
intron-intron	ENST00000497428	ENST00000486000		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
In-frame	ENST00000317304	ENST00000359271		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
5CDS-intron	ENST00000317304	ENST00000486000		TCGA	RV	UCEC	TCGA-5B-A90C-01A	EYA2	chr20	45644936	+	SLC2A10	chr20	45353680	+
5UTR-3CDS	ENST00000369983	ENST00000372292		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GBF1	chr10	104005538	+	SFTPD	chr10	81697984	-
intron-3CDS	ENST00000476019	ENST00000372292		TCGA	RV	UCEC	TCGA-5B-A90C-01A	GBF1	chr10	104005538	+	SFTPD	chr10	81697984	-
Frame-shit	ENST00000320717	ENST00000520309		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000320717	ENST00000313581		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000320717	ENST00000281412		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000320717	ENST00000438402		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000320717	ENST00000431575		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-intron	ENST00000320717	ENST00000461516		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000338435	ENST00000520309		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000338435	ENST00000313581		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000338435	ENST00000281412		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000338435	ENST00000438402		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000338435	ENST00000431575		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-intron	ENST00000338435	ENST00000461516		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000409626	ENST00000520309		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000409626	ENST00000313581		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409626	ENST00000281412		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409626	ENST00000438402		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409626	ENST00000431575		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-intron	ENST00000409626	ENST00000461516		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000409428	ENST00000520309		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000409428	ENST00000313581		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409428	ENST00000281412		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409428	ENST00000438402		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409428	ENST00000431575		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-intron	ENST00000409428	ENST00000461516		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000409215	ENST00000520309		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000409215	ENST00000313581		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409215	ENST00000281412		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409215	ENST00000438402		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-3UTR	ENST00000409215	ENST00000431575		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
5CDS-intron	ENST00000409215	ENST00000461516		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
3UTR-3CDS	ENST00000471443	ENST00000520309		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
3UTR-3CDS	ENST00000471443	ENST00000313581		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
3UTR-3UTR	ENST00000471443	ENST00000281412		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
3UTR-3UTR	ENST00000471443	ENST00000438402		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
3UTR-3UTR	ENST00000471443	ENST00000431575		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
3UTR-intron	ENST00000471443	ENST00000461516		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GLS	chr2	191796363	+	ANKAR	chr2	190609468	+
Frame-shit	ENST00000361445	ENST00000435213		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
Frame-shit	ENST00000361445	ENST00000314904		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
Frame-shit	ENST00000361445	ENST00000373387		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
5CDS-3UTR	ENST00000361445	ENST00000496711		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3CDS	ENST00000376838	ENST00000435213		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3CDS	ENST00000376838	ENST00000314904		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3CDS	ENST00000376838	ENST00000373387		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3UTR	ENST00000376838	ENST00000496711		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3CDS	ENST00000495435	ENST00000435213		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3CDS	ENST00000495435	ENST00000314904		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3CDS	ENST00000495435	ENST00000373387		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
intron-3UTR	ENST00000495435	ENST00000496711		TCGA	RV	UCEC	TCGA-EY-A210-01A	MTOR	chr1	11217209	-	GARNL3	chr9	130151183	+
5CDS-intron	ENST00000546283	ENST00000585748		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000546283	ENST00000326873		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000233627	ENST00000585748		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000233627	ENST00000326873		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000539480	ENST00000585748		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000539480	ENST00000326873		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000313408	ENST00000585748		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000313408	ENST00000326873		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000414651	ENST00000585748		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
5CDS-intron	ENST00000414651	ENST00000326873		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
3UTR-intron	ENST00000540530	ENST00000585748		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
3UTR-intron	ENST00000540530	ENST00000326873		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	NDUFS7	chr19	1388592	+	STK11	chr19	1222984	+
Frame-shit	ENST00000377705	ENST00000377828		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	NOL9	chr1	6601890	-	ESPN	chr1	6517244	+
Frame-shit	ENST00000377705	ENST00000461727		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	NOL9	chr1	6601890	-	ESPN	chr1	6517244	+
5CDS-3UTR	ENST00000377705	ENST00000475228		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	NOL9	chr1	6601890	-	ESPN	chr1	6517244	+
5CDS-3UTR	ENST00000377705	ENST00000416731		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	NOL9	chr1	6601890	-	ESPN	chr1	6517244	+
5CDS-5UTR	ENST00000368802	ENST00000368682		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000354650		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000229471		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000368667		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000368678		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000229470		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000356013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000538466		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000476769		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000368682		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000354650		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000229471		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000368667		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000368678		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000229470		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000356013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000538466		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000476769		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000368682		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000354650		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000229471		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000368667		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000368678		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000229470		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000435970	ENST00000356013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000538466		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000435970	ENST00000476769		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000368682		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000354650		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000229471		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000368667		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000368678		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000229470		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000356013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000538466		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000476769		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000368682		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000354650		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000229471		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000368667		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000368678		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000229470		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000356013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000538466		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000476769		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	REV3L	chr6	111732683	-	FYN	chr6	112101838	-
intron-intron	ENST00000437840	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000437840	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
5CDS-intron	ENST00000497454	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000444031	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000494749	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000413136	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000549377	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000473419	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000452084	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000550374	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000480780	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000416548	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000548778	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000383204	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000487403	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000266000		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000374542		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000414083		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000477162		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000455860		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000436311		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000472399		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000399060		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000383062		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000461796		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000433482		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000445009		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000469277		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000399344		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000383194		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000494562		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
intron-intron	ENST00000547127	ENST00000414388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	RGL2	chr6	33266232	-	DAXX	chr6	33291807	-
In-frame	ENST00000374140	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
5CDS-3UTR	ENST00000374140	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
In-frame	ENST00000350696	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
5CDS-3UTR	ENST00000350696	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3CDS	ENST00000317613	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3UTR	ENST00000317613	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
In-frame	ENST00000343817	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
5CDS-3UTR	ENST00000343817	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3CDS	ENST00000394646	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3UTR	ENST00000394646	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3CDS	ENST00000374136	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3UTR	ENST00000374136	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
In-frame	ENST00000462143	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
5CDS-3UTR	ENST00000462143	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3CDS	ENST00000463806	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3UTR	ENST00000463806	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3CDS	ENST00000342620	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3UTR	ENST00000342620	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
In-frame	ENST00000374134	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
5CDS-3UTR	ENST00000374134	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3CDS	ENST00000462403	ENST00000374183		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
intron-3UTR	ENST00000462403	ENST00000462085		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	RGS3	chr9	116346707	+	BSPRY	chr9	116116520	+
5CDS-5UTR	ENST00000397517	ENST00000435564		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000536095		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000409365		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000331935		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000351439		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-5UTR	ENST00000397517	ENST00000410103		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000358139		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000456212		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000346717		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000397517	ENST00000482538		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-5UTR	ENST00000539966	ENST00000435564		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000536095		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000409365		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000331935		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000351439		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-5UTR	ENST00000539966	ENST00000410103		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000358139		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000456212		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000346717		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
5CDS-intron	ENST00000539966	ENST00000482538		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000481288	ENST00000435564		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000536095		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000409365		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000331935		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000351439		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000481288	ENST00000410103		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000358139		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000456212		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000346717		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000481288	ENST00000482538		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000376547	ENST00000435564		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000536095		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000409365		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000331935		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000351439		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-5UTR	ENST00000376547	ENST00000410103		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000358139		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000456212		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000346717		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
intron-intron	ENST00000376547	ENST00000482538		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	STK24	chr13	99228999	-	PDE1A	chr2	183387113	-
Frame-shit	ENST00000373302	ENST00000423994		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000429770		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000435965		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000266039		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000395083		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000360963		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000424201		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373302	ENST00000479441		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
5CDS-intron	ENST00000373302	ENST00000487413		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000423994		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000429770		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000435965		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000266039		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000395083		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000360963		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000424201		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000373299	ENST00000479441		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
5CDS-intron	ENST00000373299	ENST00000487413		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000423994		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000429770		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000435965		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000266039		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000395083		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000360963		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000424201		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-3CDS	ENST00000481942	ENST00000479441		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
intron-intron	ENST00000481942	ENST00000487413		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	STXBP1	chr9	130425632	+	CACNA2D2	chr3	50418557	-
Frame-shit	ENST00000399537	ENST00000425013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
Frame-shit	ENST00000399537	ENST00000389902		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
5CDS-intron	ENST00000399537	ENST00000469375		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
Frame-shit	ENST00000430969	ENST00000425013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
Frame-shit	ENST00000430969	ENST00000389902		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
5CDS-intron	ENST00000430969	ENST00000469375		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
intron-intron	ENST00000399434	ENST00000469375		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	TNRC18	chr7	5399029	-	RNF216	chr7	5765069	-
5CDS-5UTR	ENST00000216254	ENST00000006251		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-5UTR	ENST00000216254	ENST00000403581		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-5UTR	ENST00000216254	ENST00000336985		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-intron	ENST00000216254	ENST00000477331		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-5UTR	ENST00000396512	ENST00000006251		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-5UTR	ENST00000396512	ENST00000403581		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-5UTR	ENST00000396512	ENST00000336985		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
5CDS-intron	ENST00000396512	ENST00000477331		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
intron-5UTR	ENST00000466237	ENST00000006251		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
intron-5UTR	ENST00000466237	ENST00000403581		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
intron-5UTR	ENST00000466237	ENST00000336985		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
intron-intron	ENST00000466237	ENST00000477331		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	ACO2	chr22	41895866	+	PRR5	chr22	45098372	+
Frame-shit	ENST00000298834	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000426438	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000314845	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000533727	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000534300	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000458649	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
Frame-shit	ENST00000528950	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
intron-3CDS	ENST00000529963	ENST00000326737		TCGA	RV	UCEC	TCGA-5B-A90C-01A	AMBRA1	chr11	46563495	-	HARBI1	chr11	46625459	-
5CDS-5UTR	ENST00000357681	ENST00000230323		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357681	ENST00000358871		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357681	ENST00000420312		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357681	ENST00000403298		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357681	ENST00000373033		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000357681	ENST00000394283		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000391954	ENST00000230323		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000391954	ENST00000358871		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000391954	ENST00000420312		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000391954	ENST00000403298		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000391954	ENST00000373033		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000391954	ENST00000394283		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367218	ENST00000230323		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367218	ENST00000358871		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367218	ENST00000420312		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367218	ENST00000403298		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367218	ENST00000373033		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367218	ENST00000394283		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367219	ENST00000230323		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367219	ENST00000358871		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367219	ENST00000420312		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367219	ENST00000403298		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367219	ENST00000373033		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000367219	ENST00000394283		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000341360	ENST00000230323		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000341360	ENST00000358871		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000341360	ENST00000420312		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000341360	ENST00000403298		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000341360	ENST00000373033		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
5CDS-5UTR	ENST00000341360	ENST00000394283		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
3UTR-5UTR	ENST00000466407	ENST00000230323		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
3UTR-5UTR	ENST00000466407	ENST00000358871		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
3UTR-5UTR	ENST00000466407	ENST00000420312		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
3UTR-5UTR	ENST00000466407	ENST00000403298		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
3UTR-5UTR	ENST00000466407	ENST00000373033		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
3UTR-5UTR	ENST00000466407	ENST00000394283		TCGA	RV	UCEC	TCGA-AX-A3G7-01A	ATP2B4	chr1	203696699	+	TFEB	chr6	41658973	-
Frame-shit	ENST00000367278	ENST00000367282		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LGR6	chr1	202163329	+	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000255432	ENST00000367282		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LGR6	chr1	202163329	+	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000439764	ENST00000367282		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LGR6	chr1	202163329	+	GPR37L1	chr1	202096869	+
intron-3CDS	ENST00000308543	ENST00000367282		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LGR6	chr1	202163329	+	GPR37L1	chr1	202096869	+
5CDS-intron	ENST00000302349	ENST00000544798		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000302349	ENST00000238156		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000302349	ENST00000545135		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000302349	ENST00000545891		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000541076	ENST00000544798		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000541076	ENST00000238156		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000541076	ENST00000545135		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000541076	ENST00000545891		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000606320	ENST00000544798		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000606320	ENST00000238156		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000606320	ENST00000545135		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000606320	ENST00000545891		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000392425	ENST00000544798		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000392425	ENST00000238156		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000392425	ENST00000545135		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
5CDS-intron	ENST00000392425	ENST00000545891		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
intron-intron	ENST00000539639	ENST00000544798		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
intron-intron	ENST00000539639	ENST00000238156		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
intron-intron	ENST00000539639	ENST00000545135		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
intron-intron	ENST00000539639	ENST00000545891		TCGA	RV	UCEC	TCGA-PG-A914-01A	MPHOSPH9	chr12	123682794	-	CCDC92	chr12	124422377	-
Frame-shit	ENST00000288235	ENST00000434316		TCGA	RV	UCEC	TCGA-PG-A914-01A	MYO1E	chr15	59664697	-	TMCO3	chr13	114174931	+
5CDS-intron	ENST00000288235	ENST00000375391		TCGA	RV	UCEC	TCGA-PG-A914-01A	MYO1E	chr15	59664697	-	TMCO3	chr13	114174931	+
5CDS-3UTR	ENST00000288235	ENST00000474393		TCGA	RV	UCEC	TCGA-PG-A914-01A	MYO1E	chr15	59664697	-	TMCO3	chr13	114174931	+
intron-3CDS	ENST00000558814	ENST00000434316		TCGA	RV	UCEC	TCGA-PG-A914-01A	MYO1E	chr15	59664697	-	TMCO3	chr13	114174931	+
intron-intron	ENST00000558814	ENST00000375391		TCGA	RV	UCEC	TCGA-PG-A914-01A	MYO1E	chr15	59664697	-	TMCO3	chr13	114174931	+
intron-3UTR	ENST00000558814	ENST00000474393		TCGA	RV	UCEC	TCGA-PG-A914-01A	MYO1E	chr15	59664697	-	TMCO3	chr13	114174931	+
intron-3CDS	ENST00000521746	ENST00000399881		TCGA	RV	UCEC	TCGA-K6-A3WQ-01A	PLEKHA2	chr8	38814904	+	KCNU1	chr8	36663787	+
intron-intron	ENST00000521746	ENST00000518904		TCGA	RV	UCEC	TCGA-K6-A3WQ-01A	PLEKHA2	chr8	38814904	+	KCNU1	chr8	36663787	+
In-frame	ENST00000420274	ENST00000399881		TCGA	RV	UCEC	TCGA-K6-A3WQ-01A	PLEKHA2	chr8	38814904	+	KCNU1	chr8	36663787	+
5CDS-intron	ENST00000420274	ENST00000518904		TCGA	RV	UCEC	TCGA-K6-A3WQ-01A	PLEKHA2	chr8	38814904	+	KCNU1	chr8	36663787	+
3UTR-3CDS	ENST00000388745	ENST00000399881		TCGA	RV	UCEC	TCGA-K6-A3WQ-01A	PLEKHA2	chr8	38814904	+	KCNU1	chr8	36663787	+
3UTR-intron	ENST00000388745	ENST00000518904		TCGA	RV	UCEC	TCGA-K6-A3WQ-01A	PLEKHA2	chr8	38814904	+	KCNU1	chr8	36663787	+
Frame-shit	ENST00000246794	ENST00000371694		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	PRRG2	chr19	50086561	+	AGPAT2	chr9	139572008	-
Frame-shit	ENST00000246794	ENST00000371696		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	PRRG2	chr19	50086561	+	AGPAT2	chr9	139572008	-
Frame-shit	ENST00000246794	ENST00000538402		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	PRRG2	chr19	50086561	+	AGPAT2	chr9	139572008	-
intron-3CDS	ENST00000596700	ENST00000371694		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	PRRG2	chr19	50086561	+	AGPAT2	chr9	139572008	-
intron-3CDS	ENST00000596700	ENST00000371696		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	PRRG2	chr19	50086561	+	AGPAT2	chr9	139572008	-
intron-3CDS	ENST00000596700	ENST00000538402		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	PRRG2	chr19	50086561	+	AGPAT2	chr9	139572008	-
Frame-shit	ENST00000394752	ENST00000327921		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000394752	ENST00000262233		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000394752	ENST00000334192		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
5CDS-intron	ENST00000394752	ENST00000556758		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
In-frame	ENST00000394750	ENST00000327921		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
In-frame	ENST00000394750	ENST00000262233		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
In-frame	ENST00000394750	ENST00000334192		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
5CDS-intron	ENST00000394750	ENST00000556758		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
In-frame	ENST00000358080	ENST00000327921		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
In-frame	ENST00000358080	ENST00000262233		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
In-frame	ENST00000358080	ENST00000334192		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
5CDS-intron	ENST00000358080	ENST00000556758		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000296295	ENST00000327921		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000296295	ENST00000262233		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000296295	ENST00000334192		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
5CDS-intron	ENST00000296295	ENST00000556758		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000470575	ENST00000327921		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000470575	ENST00000262233		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
Frame-shit	ENST00000470575	ENST00000334192		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
5CDS-intron	ENST00000470575	ENST00000556758		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SFMBT1	chr3	52988333	-	EML1	chr14	100357536	+
5CDS-5UTR	ENST00000394023	ENST00000548567		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000394023	ENST00000351328		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000394023	ENST00000542324		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000550164	ENST00000548567		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000550164	ENST00000351328		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000550164	ENST00000542324		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000347471	ENST00000548567		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000347471	ENST00000351328		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000347471	ENST00000542324		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000267064	ENST00000548567		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000267064	ENST00000351328		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
5CDS-5UTR	ENST00000267064	ENST00000542324		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
intron-5UTR	ENST00000550859	ENST00000548567		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
intron-5UTR	ENST00000550859	ENST00000351328		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
intron-5UTR	ENST00000550859	ENST00000542324		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	SMARCC2	chr12	56561844	-	CS	chr12	56680429	-
In-frame	ENST00000520931	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000520931	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000520931	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000520931	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000520931	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000520931	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000389378	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000389378	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000389378	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000389378	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000389378	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000389378	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000523338	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000523338	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000523338	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000523338	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000523338	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000523338	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000315050	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000315050	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000315050	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000315050	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
In-frame	ENST00000315050	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000315050	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000522226	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000522226	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000522226	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000522226	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000522226	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000522226	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000518977	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000518977	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000518977	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000518977	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000518977	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000518977	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000521591	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000521591	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000521591	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000521591	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000521591	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000521591	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000524280	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000524280	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000524280	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000524280	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000524280	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000524280	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000523200	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000523200	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000523200	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000523200	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
Frame-shit	ENST00000523200	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
5CDS-intron	ENST00000523200	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-3CDS	ENST00000521423	ENST00000354546		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-3CDS	ENST00000521423	ENST00000523714		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-3CDS	ENST00000521423	ENST00000356496		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-3CDS	ENST00000521423	ENST00000377751		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-3CDS	ENST00000521423	ENST00000521512		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-intron	ENST00000521423	ENST00000519610		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNIP1	chr5	150418658	-	ANXA6	chr5	150497398	-
intron-3CDS	ENST00000594022	ENST00000540746		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
intron-intron	ENST00000594022	ENST00000544216		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
intron-intron	ENST00000594022	ENST00000433627		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
In-frame	ENST00000358491	ENST00000540746		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
5CDS-intron	ENST00000358491	ENST00000544216		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
5CDS-intron	ENST00000358491	ENST00000433627		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
In-frame	ENST00000597078	ENST00000540746		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
5CDS-intron	ENST00000597078	ENST00000544216		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
5CDS-intron	ENST00000597078	ENST00000433627		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34717313	+
5UTR-3CDS	ENST00000247087	ENST00000373824		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000247087	ENST00000263974		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000247087	ENST00000471683		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000374011	ENST00000373824		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000374011	ENST00000263974		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000374011	ENST00000471683		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000480033	ENST00000373824		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000480033	ENST00000263974		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
5UTR-3CDS	ENST00000480033	ENST00000471683		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	AHDC1	chr1	27929908	-	TAF12	chr1	28944542	-
In-frame	ENST00000389048	ENST00000535157		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
In-frame	ENST00000389048	ENST00000377246		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
In-frame	ENST00000389048	ENST00000349847		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
5CDS-intron	ENST00000389048	ENST00000469982		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-3CDS	ENST00000431873	ENST00000535157		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-3CDS	ENST00000431873	ENST00000377246		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-3CDS	ENST00000431873	ENST00000349847		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-intron	ENST00000431873	ENST00000469982		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-3CDS	ENST00000498037	ENST00000535157		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-3CDS	ENST00000498037	ENST00000377246		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-3CDS	ENST00000498037	ENST00000349847		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
intron-intron	ENST00000498037	ENST00000469982		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	ALK	chr2	29754781	-	SCEL	chr13	78202082	+
Frame-shit	ENST00000271332	ENST00000234677		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CELSR2	chr1	109816292	+	SARS	chr1	109773500	+
Frame-shit	ENST00000271332	ENST00000369923		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CELSR2	chr1	109816292	+	SARS	chr1	109773500	+
5CDS-intron	ENST00000271332	ENST00000468588		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CELSR2	chr1	109816292	+	SARS	chr1	109773500	+
3UTR-3CDS	ENST00000498157	ENST00000234677		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CELSR2	chr1	109816292	+	SARS	chr1	109773500	+
3UTR-3CDS	ENST00000498157	ENST00000369923		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CELSR2	chr1	109816292	+	SARS	chr1	109773500	+
3UTR-intron	ENST00000498157	ENST00000468588		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	CELSR2	chr1	109816292	+	SARS	chr1	109773500	+
Frame-shit	ENST00000435064	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5CDS-intron	ENST00000435064	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
Frame-shit	ENST00000411962	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5CDS-intron	ENST00000411962	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
intron-3CDS	ENST00000462432	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
intron-intron	ENST00000462432	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5UTR-3CDS	ENST00000540437	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5UTR-intron	ENST00000540437	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5UTR-3CDS	ENST00000421495	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5UTR-intron	ENST00000421495	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
Frame-shit	ENST00000419704	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5CDS-intron	ENST00000419704	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
Frame-shit	ENST00000450926	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5CDS-intron	ENST00000450926	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5UTR-3CDS	ENST00000545578	ENST00000378609		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
5UTR-intron	ENST00000545578	ENST00000472614		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	CPSF3L	chr1	1259961	-	GNB1	chr1	1724750	-
In-frame	ENST00000311172	ENST00000263674		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000311172	ENST00000536170		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
In-frame	ENST00000409314	ENST00000263674		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000409314	ENST00000536170		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
In-frame	ENST00000409418	ENST00000263674		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000409418	ENST00000536170		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
In-frame	ENST00000458644	ENST00000263674		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000458644	ENST00000536170		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
Frame-shit	ENST00000409853	ENST00000263674		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
5CDS-3UTR	ENST00000409853	ENST00000536170		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
intron-3CDS	ENST00000409263	ENST00000263674		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
intron-3UTR	ENST00000409263	ENST00000536170		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	FCHSD2	chr11	72578910	-	ARHGEF17	chr11	73057928	+
5CDS-intron	ENST00000053867	ENST00000267101		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000053867	ENST00000450146		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000053867	ENST00000415288		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000053867	ENST00000553131		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000053867	ENST00000411731		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000053867	ENST00000549832		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589265	ENST00000267101		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589265	ENST00000450146		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589265	ENST00000415288		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589265	ENST00000553131		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589265	ENST00000411731		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589265	ENST00000549832		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589923	ENST00000267101		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589923	ENST00000450146		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589923	ENST00000415288		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589923	ENST00000553131		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589923	ENST00000411731		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
intron-intron	ENST00000589923	ENST00000549832		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	GRN	chr17	42430470	+	ERBB3	chr12	56492035	+
Frame-shit	ENST00000356554	ENST00000369466		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	MAN1A2	chr1	118003234	+	TTF2	chr1	117641455	+
5CDS-3UTR	ENST00000356554	ENST00000480701		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	MAN1A2	chr1	118003234	+	TTF2	chr1	117641455	+
intron-3CDS	ENST00000482811	ENST00000369466		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	MAN1A2	chr1	118003234	+	TTF2	chr1	117641455	+
intron-3UTR	ENST00000482811	ENST00000480701		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	MAN1A2	chr1	118003234	+	TTF2	chr1	117641455	+
Frame-shit	ENST00000291442	ENST00000252590		TCGA	RV	UCEC	TCGA-5B-A90C-01A	NR2F6	chr19	17351480	-	PLVAP	chr19	17477004	-
In-frame	ENST00000368467	ENST00000368457		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	PMVK	chr1	154904828	-	PYGO2	chr1	154932322	-
In-frame	ENST00000368467	ENST00000368456		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	PMVK	chr1	154904828	-	PYGO2	chr1	154932322	-
5CDS-5UTR	ENST00000368467	ENST00000483463		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	PMVK	chr1	154904828	-	PYGO2	chr1	154932322	-
5CDS-5UTR	ENST00000368802	ENST00000368761		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368802	ENST00000359831		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368802	ENST00000392556		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368802	ENST00000340026		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000368802	ENST00000368731		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000368802	ENST00000368735		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368805	ENST00000368761		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368805	ENST00000359831		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368805	ENST00000392556		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000368805	ENST00000340026		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000368805	ENST00000368731		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000368805	ENST00000368735		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000435970	ENST00000368761		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000435970	ENST00000359831		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000435970	ENST00000392556		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000435970	ENST00000340026		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000435970	ENST00000368731		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000435970	ENST00000368735		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000358835	ENST00000368761		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000358835	ENST00000359831		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000358835	ENST00000392556		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000358835	ENST00000340026		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000358835	ENST00000368731		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-intron	ENST00000358835	ENST00000368735		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
intron-5UTR	ENST00000462119	ENST00000368761		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
intron-5UTR	ENST00000462119	ENST00000359831		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
intron-5UTR	ENST00000462119	ENST00000392556		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
intron-5UTR	ENST00000462119	ENST00000340026		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
intron-intron	ENST00000462119	ENST00000368731		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
intron-intron	ENST00000462119	ENST00000368735		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	REV3L	chr6	111714079	-	TRAF3IP2	chr6	111913297	-
5CDS-5UTR	ENST00000248054	ENST00000330997		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000248054	ENST00000544719		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000248054	ENST00000591679		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000596802	ENST00000330997		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000596802	ENST00000544719		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000596802	ENST00000591679		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000379803	ENST00000330997		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000379803	ENST00000544719		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5CDS-5UTR	ENST00000379803	ENST00000591679		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000595541	ENST00000330997		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000595541	ENST00000544719		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000595541	ENST00000591679		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000594235	ENST00000330997		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000594235	ENST00000544719		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
intron-5UTR	ENST00000594235	ENST00000591679		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	SIN3B	chr19	16952779	+	ZNF285	chr19	44901421	-
5UTR-3CDS	ENST00000222345	ENST00000300935		TCGA	RV	UCEC	TCGA-PG-A914-01A	SIPA1L3	chr19	38397998	+	RAB8A	chr19	16236280	+
5UTR-intron	ENST00000222345	ENST00000588105		TCGA	RV	UCEC	TCGA-PG-A914-01A	SIPA1L3	chr19	38397998	+	RAB8A	chr19	16236280	+
5UTR-intron	ENST00000222345	ENST00000586682		TCGA	RV	UCEC	TCGA-PG-A914-01A	SIPA1L3	chr19	38397998	+	RAB8A	chr19	16236280	+
intron-3CDS	ENST00000476317	ENST00000300935		TCGA	RV	UCEC	TCGA-PG-A914-01A	SIPA1L3	chr19	38397998	+	RAB8A	chr19	16236280	+
intron-intron	ENST00000476317	ENST00000588105		TCGA	RV	UCEC	TCGA-PG-A914-01A	SIPA1L3	chr19	38397998	+	RAB8A	chr19	16236280	+
intron-intron	ENST00000476317	ENST00000586682		TCGA	RV	UCEC	TCGA-PG-A914-01A	SIPA1L3	chr19	38397998	+	RAB8A	chr19	16236280	+
In-frame	ENST00000420764	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000420764	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
5CDS-intron	ENST00000420764	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
intron-3CDS	ENST00000358747	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
intron-3CDS	ENST00000358747	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
intron-intron	ENST00000358747	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000395550	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000395550	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
5CDS-intron	ENST00000395550	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000383733	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000383733	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
5CDS-intron	ENST00000383733	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000337000	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000337000	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
5CDS-intron	ENST00000337000	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000455886	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
In-frame	ENST00000455886	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
5CDS-intron	ENST00000455886	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
intron-3CDS	ENST00000482282	ENST00000371270		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
intron-3CDS	ENST00000482282	ENST00000535898		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
intron-intron	ENST00000482282	ENST00000539050		TCGA	RV	UCEC	TCGA-AJ-A3IA-01A	SLC26A6	chr3	48672804	-	CYP2C8	chr10	96798795	-
5CDS-5UTR	ENST00000265909	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000265909	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000265909	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000265909	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000265909	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000534726	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000534726	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000534726	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000534726	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000534726	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000545537	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000545537	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000545537	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000545537	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000545537	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000426933	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000426933	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000426933	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000426933	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000426933	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000533318	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000533318	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000533318	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000533318	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000533318	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000530356	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000530356	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000530356	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000530356	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000530356	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000539184	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000539184	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000539184	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000539184	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000539184	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000528555	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000528555	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000528555	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000528555	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
intron-5UTR	ENST00000528555	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000533214	ENST00000479481		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000533214	ENST00000370992		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000533214	ENST00000536831		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000533214	ENST00000315563		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
5CDS-5UTR	ENST00000533214	ENST00000414986		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	SNX19	chr11	130784161	-	RRP12	chr10	99130553	-
Frame-shit	ENST00000393651	ENST00000480514		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
Frame-shit	ENST00000393651	ENST00000485614		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
Frame-shit	ENST00000393651	ENST00000486180		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
5CDS-5UTR	ENST00000393651	ENST00000490493		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
5CDS-intron	ENST00000393651	ENST00000460135		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000357311	ENST00000480514		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000357311	ENST00000485614		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000357311	ENST00000486180		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-5UTR	ENST00000357311	ENST00000490493		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-intron	ENST00000357311	ENST00000460135		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000489828	ENST00000480514		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000489828	ENST00000485614		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000489828	ENST00000486180		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-5UTR	ENST00000489828	ENST00000490493		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-intron	ENST00000489828	ENST00000460135		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000493638	ENST00000480514		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000493638	ENST00000485614		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-3CDS	ENST00000493638	ENST00000486180		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-5UTR	ENST00000493638	ENST00000490493		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
intron-intron	ENST00000493638	ENST00000460135		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	SRPK2	chr7	105029095	-	EFCAB10	chr7	105210018	-
Frame-shit	ENST00000262144	ENST00000283882		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	WDR59	chr16	74919551	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000262144	ENST00000564286		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	WDR59	chr16	74919551	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000562331	ENST00000283882		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	WDR59	chr16	74919551	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000562331	ENST00000564286		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	WDR59	chr16	74919551	-	CFDP1	chr16	75339080	-
5UTR-3CDS	ENST00000322357	ENST00000262948		TCGA	RV	UCEC	TCGA-EO-A22X-01A	ZBTB7A	chr19	4066680	-	MAP2K2	chr19	4110653	-
5UTR-3CDS	ENST00000322357	ENST00000394867		TCGA	RV	UCEC	TCGA-EO-A22X-01A	ZBTB7A	chr19	4066680	-	MAP2K2	chr19	4110653	-
5UTR-5UTR	ENST00000322357	ENST00000599345		TCGA	RV	UCEC	TCGA-EO-A22X-01A	ZBTB7A	chr19	4066680	-	MAP2K2	chr19	4110653	-
intron-3CDS	ENST00000601588	ENST00000262948		TCGA	RV	UCEC	TCGA-EO-A22X-01A	ZBTB7A	chr19	4066680	-	MAP2K2	chr19	4110653	-
intron-3CDS	ENST00000601588	ENST00000394867		TCGA	RV	UCEC	TCGA-EO-A22X-01A	ZBTB7A	chr19	4066680	-	MAP2K2	chr19	4110653	-
intron-5UTR	ENST00000601588	ENST00000599345		TCGA	RV	UCEC	TCGA-EO-A22X-01A	ZBTB7A	chr19	4066680	-	MAP2K2	chr19	4110653	-
5UTR-5UTR	ENST00000357681	ENST00000343110		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ATP2B4	chr1	203596347	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000391954	ENST00000343110		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ATP2B4	chr1	203596347	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367218	ENST00000343110		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ATP2B4	chr1	203596347	+	PRELP	chr1	203452297	+
5UTR-5UTR	ENST00000367219	ENST00000343110		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ATP2B4	chr1	203596347	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000341360	ENST00000343110		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ATP2B4	chr1	203596347	+	PRELP	chr1	203452297	+
intron-5UTR	ENST00000466407	ENST00000343110		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ATP2B4	chr1	203596347	+	PRELP	chr1	203452297	+
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000209875	ENST00000319394		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CBX5	chr12	54673792	-	WDTC1	chr1	27608730	+
5UTR-3CDS	ENST00000209875	ENST00000361771		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CBX5	chr12	54673792	-	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000439541	ENST00000319394		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CBX5	chr12	54673792	-	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000439541	ENST00000361771		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CBX5	chr12	54673792	-	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000550411	ENST00000319394		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CBX5	chr12	54673792	-	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000550411	ENST00000361771		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	CBX5	chr12	54673792	-	WDTC1	chr1	27608730	+
intron-3CDS	ENST00000372259	ENST00000360403		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
intron-3CDS	ENST00000372259	ENST00000372183		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
intron-5UTR	ENST00000372259	ENST00000480675		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
In-frame	ENST00000372257	ENST00000360403		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
In-frame	ENST00000372257	ENST00000372183		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
5CDS-5UTR	ENST00000372257	ENST00000480675		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
5UTR-3CDS	ENST00000537474	ENST00000360403		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
5UTR-3CDS	ENST00000537474	ENST00000372183		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
5UTR-5UTR	ENST00000537474	ENST00000480675		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
intron-3CDS	ENST00000495828	ENST00000360403		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
intron-3CDS	ENST00000495828	ENST00000372183		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
intron-5UTR	ENST00000495828	ENST00000480675		TCGA	RV	UCEC	TCGA-JU-AAVI-01A	ERI3	chr1	44818522	-	EIF2B3	chr1	45392411	-
In-frame	ENST00000359786	ENST00000338859		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000359786	ENST00000389313		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
In-frame	ENST00000438665	ENST00000338859		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000438665	ENST00000389313		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000575158	ENST00000338859		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000575158	ENST00000389313		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
In-frame	ENST00000361007	ENST00000338859		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000361007	ENST00000389313		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
In-frame	ENST00000545534	ENST00000338859		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000545534	ENST00000389313		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
intron-3CDS	ENST00000573198	ENST00000338859		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
intron-3CDS	ENST00000573198	ENST00000389313		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381704	-	SMTNL2	chr17	4510656	+
5UTR-3CDS	ENST00000369981	ENST00000370010		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000370014		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000447266		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369981	ENST00000541192		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369981	ENST00000327284		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369981	ENST00000436928		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000370010		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000370014		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000447266		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369985	ENST00000541192		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369985	ENST00000327284		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369985	ENST00000436928		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000370010		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000370014		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000447266		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000369977	ENST00000541192		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369977	ENST00000327284		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-intron	ENST00000369977	ENST00000436928		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000370010		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000370014		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000447266		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000369975	ENST00000541192		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000369975	ENST00000327284		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000369975	ENST00000436928		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-3CDS	ENST00000462633	ENST00000541192		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000462633	ENST00000327284		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	MYO6	chr6	76459140	+	SENP6	chr6	76405520	+
5UTR-3CDS	ENST00000522684	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000522684	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000522684	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-intron	ENST00000522684	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000535192	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000535192	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000535192	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000535192	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519465	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519465	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519465	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000519465	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000517887	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000517887	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000517887	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000517887	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000521059	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000521059	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000521059	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-intron	ENST00000521059	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000395218	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000395218	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000395218	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-intron	ENST00000395218	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000538769	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000538769	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000538769	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000538769	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000340930	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000340930	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000340930	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-intron	ENST00000340930	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519419	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519419	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519419	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000519419	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000430260	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000430260	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000430260	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000430260	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000519881	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000519881	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-3CDS	ENST00000519881	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
5UTR-intron	ENST00000519881	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000520892	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000520892	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000520892	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000520892	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519635	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519635	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000519635	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000519635	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000517712	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000517712	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000517712	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000517712	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000522950	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000522950	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000522950	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000522950	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000520151	ENST00000389327		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000520151	ENST00000389328		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000520151	ENST00000438773		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-intron	ENST00000520151	ENST00000522504		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	PTK2	chr8	142011224	-	TRAPPC9	chr8	141034176	-
intron-3CDS	ENST00000358495	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000358495	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000358495	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000358495	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000430095	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000430095	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000430095	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000430095	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000539046	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000539046	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000539046	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000539046	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000536177	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000536177	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000536177	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000536177	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000544742	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000544742	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000544742	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000544742	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000541619	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000541619	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000541619	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000541619	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000535376	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000535376	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000535376	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000535376	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000545564	ENST00000535829		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000545564	ENST00000357529		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000545564	ENST00000299673		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000545564	ENST00000538135		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058569	-	RIMKLB	chr12	8925917	+
5CDS-intron	ENST00000310803	ENST00000471694		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000310803	ENST00000355354		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000310803	ENST00000361309		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000539159	ENST00000471694		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000539159	ENST00000355354		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000539159	ENST00000361309		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000561180	ENST00000471694		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000561180	ENST00000355354		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000561180	ENST00000361309		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000450598	ENST00000471694		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000450598	ENST00000355354		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000450598	ENST00000361309		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000558164	ENST00000471694		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000558164	ENST00000355354		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000558164	ENST00000361309		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000559830	ENST00000471694		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000559830	ENST00000355354		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
5CDS-intron	ENST00000559830	ENST00000361309		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	RASGRP1	chr15	38852022	-	CD47	chr3	107799191	-
Frame-shit	ENST00000275230	ENST00000367858		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
In-frame	ENST00000275230	ENST00000524929		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000413996		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000237305		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000367857		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000528577		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000475719		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5CDS-intron	ENST00000275230	ENST00000489458		TCGA	RV	UCEC	TCGA-BK-A139-01A	SLC2A12	chr6	134349519	-	SGK1	chr6	134583286	-
5UTR-5UTR	ENST00000447404	ENST00000473039		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000373624		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000542603		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000394219		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000373620		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000447404	ENST00000394215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000447404	ENST00000373618		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000473039		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000373624		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000542603		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000394219		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000373620		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000348403	ENST00000394215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000348403	ENST00000373618		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000473039		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000373624		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000542603		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000394219		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000373620		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-5UTR	ENST00000360998	ENST00000394215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
5UTR-intron	ENST00000360998	ENST00000373618		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000473039		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000373624		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000542603		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000394219		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000373620		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-5UTR	ENST00000530364	ENST00000394215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
intron-intron	ENST00000530364	ENST00000373618		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	STRBP	chr9	126030715	-	DENND1A	chr9	126165769	-
In-frame	ENST00000361905	ENST00000361367		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	TEAD1	chr11	12923660	+	CTR9	chr11	10784978	+
In-frame	ENST00000527636	ENST00000361367		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	TEAD1	chr11	12923660	+	CTR9	chr11	10784978	+
intron-3CDS	ENST00000527575	ENST00000361367		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	TEAD1	chr11	12923660	+	CTR9	chr11	10784978	+
intron-3CDS	ENST00000334310	ENST00000361367		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	TEAD1	chr11	12923660	+	CTR9	chr11	10784978	+
In-frame	ENST00000361985	ENST00000361367		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	TEAD1	chr11	12923660	+	CTR9	chr11	10784978	+
In-frame	ENST00000526600	ENST00000361367		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	TEAD1	chr11	12923660	+	CTR9	chr11	10784978	+
In-frame	ENST00000367590	ENST00000263726		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	XPR1	chr1	180805852	+	LHX4	chr1	180217420	+
intron-3CDS	ENST00000367589	ENST00000263726		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	XPR1	chr1	180805852	+	LHX4	chr1	180217420	+
intron-3CDS	ENST00000467345	ENST00000263726		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	XPR1	chr1	180805852	+	LHX4	chr1	180217420	+
5UTR-3CDS	ENST00000300850	ENST00000338372		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
5UTR-intron	ENST00000300850	ENST00000376626		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000300850	ENST00000425006		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000300850	ENST00000366170		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
intron-3CDS	ENST00000394979	ENST00000338372		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
intron-intron	ENST00000394979	ENST00000376626		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
intron-3UTR	ENST00000394979	ENST00000425006		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
intron-3UTR	ENST00000394979	ENST00000366170		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	ZNF646	chr16	31085952	+	VSTM1	chr19	54545623	-
5UTR-3UTR	ENST00000378330	ENST00000564878		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000378330	ENST00000393062		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000378330	ENST00000378247		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000378330	ENST00000563972		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000301030	ENST00000564878		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000301030	ENST00000393062		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000301030	ENST00000378247		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
5UTR-3UTR	ENST00000301030	ENST00000563972		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563291	ENST00000564878		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563291	ENST00000393062		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563291	ENST00000378247		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000563291	ENST00000563972		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567736	ENST00000564878		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567736	ENST00000393062		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567736	ENST00000378247		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3UTR	ENST00000567736	ENST00000563972		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ANKRD11	chr16	89484692	-	SPIRE2	chr16	89911730	+
intron-3CDS	ENST00000392347	ENST00000398519		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000392347	ENST00000314028		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000392347	ENST00000392334		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-5UTR	ENST00000392347	ENST00000578904		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000389641	ENST00000398519		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000389641	ENST00000314028		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000389641	ENST00000392334		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-5UTR	ENST00000389641	ENST00000578904		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
Frame-shit	ENST00000392346	ENST00000398519		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
Frame-shit	ENST00000392346	ENST00000314028		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
Frame-shit	ENST00000392346	ENST00000392334		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
5CDS-5UTR	ENST00000392346	ENST00000578904		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000327026	ENST00000398519		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000327026	ENST00000314028		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000327026	ENST00000392334		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-5UTR	ENST00000327026	ENST00000578904		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000392343	ENST00000398519		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000392343	ENST00000314028		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-3CDS	ENST00000392343	ENST00000392334		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
intron-5UTR	ENST00000392343	ENST00000578904		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	CCDC57	chr17	80109436	-	CSNK1D	chr17	80209403	-
Frame-shit	ENST00000392693	ENST00000263579		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	CDON	chr11	125848199	-	DCPS	chr11	126215242	+
5CDS-3UTR	ENST00000392693	ENST00000530860		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	CDON	chr11	125848199	-	DCPS	chr11	126215242	+
In-frame	ENST00000531738	ENST00000263579		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	CDON	chr11	125848199	-	DCPS	chr11	126215242	+
5CDS-3UTR	ENST00000531738	ENST00000530860		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	CDON	chr11	125848199	-	DCPS	chr11	126215242	+
Frame-shit	ENST00000263577	ENST00000263579		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	CDON	chr11	125848199	-	DCPS	chr11	126215242	+
5CDS-3UTR	ENST00000263577	ENST00000530860		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	CDON	chr11	125848199	-	DCPS	chr11	126215242	+
Frame-shit	ENST00000262507	ENST00000219244		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	COQ9	chr16	57486848	+	CCL17	chr16	57448993	+
Frame-shit	ENST00000567072	ENST00000219244		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	COQ9	chr16	57486848	+	CCL17	chr16	57448993	+
Frame-shit	ENST00000567933	ENST00000219244		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	COQ9	chr16	57486848	+	CCL17	chr16	57448993	+
intron-3CDS	ENST00000567384	ENST00000219244		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	COQ9	chr16	57486848	+	CCL17	chr16	57448993	+
In-frame	ENST00000325631	ENST00000521381		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
In-frame	ENST00000325631	ENST00000521657		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000325631	ENST00000517643		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000325631	ENST00000274335		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000325631	ENST00000396611		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000325631	ENST00000320694		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000325631	ENST00000336483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000325631	ENST00000523872		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
In-frame	ENST00000413223	ENST00000521381		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
In-frame	ENST00000413223	ENST00000521657		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000413223	ENST00000517643		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000413223	ENST00000274335		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000413223	ENST00000396611		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000413223	ENST00000320694		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000413223	ENST00000336483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5CDS-intron	ENST00000413223	ENST00000523872		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	MARVELD2	chr5	68720463	+	PIK3R1	chr5	67589537	+
5UTR-3CDS	ENST00000392830	ENST00000008527		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
5UTR-intron	ENST00000392830	ENST00000550633		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
5UTR-3CDS	ENST00000240050	ENST00000008527		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
5UTR-intron	ENST00000240050	ENST00000550633		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
5UTR-3CDS	ENST00000552029	ENST00000008527		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
5UTR-intron	ENST00000552029	ENST00000550633		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
intron-3CDS	ENST00000547115	ENST00000008527		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
intron-intron	ENST00000547115	ENST00000550633		TCGA	RV	UCEC	TCGA-PG-A914-01A	MTERFD3	chr12	107378893	-	CRY1	chr12	107415970	-
3UTR-3CDS	ENST00000467771	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
3UTR-3CDS	ENST00000467771	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
3UTR-3CDS	ENST00000467771	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
3UTR-3CDS	ENST00000467771	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
3UTR-5UTR	ENST00000467771	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
3UTR-5UTR	ENST00000467771	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271620	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271620	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271620	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271620	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000271620	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000271620	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271619	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271619	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271619	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000271619	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000271619	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000271619	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368937	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368937	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368937	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368937	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368937	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368937	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368936	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368936	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368936	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368936	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368936	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368936	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
intron-3CDS	ENST00000368935	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
intron-3CDS	ENST00000368935	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
intron-3CDS	ENST00000368935	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
intron-3CDS	ENST00000368935	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
intron-5UTR	ENST00000368935	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
intron-5UTR	ENST00000368935	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368934	ENST00000368874		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368934	ENST00000271657		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368934	ENST00000368875		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
Frame-shit	ENST00000368934	ENST00000368873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368934	ENST00000529142		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368934	ENST00000368872		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	PRUNE	chr1	150998149	+	PI4KB	chr1	151280277	-
5CDS-5UTR	ENST00000368802	ENST00000368682		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000354650		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000229471		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000368667		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000368678		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000229470		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000356013		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368802	ENST00000538466		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-intron	ENST00000368802	ENST00000476769		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000368682		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000354650		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000229471		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000368667		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000368678		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000229470		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000356013		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000368805	ENST00000538466		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-intron	ENST00000368805	ENST00000476769		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000368682		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000354650		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000229471		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000368667		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000368678		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000229470		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000356013		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-5UTR	ENST00000435970	ENST00000538466		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5UTR-intron	ENST00000435970	ENST00000476769		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000368682		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000354650		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000229471		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000368667		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000368678		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000229470		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000356013		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-5UTR	ENST00000358835	ENST00000538466		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
5CDS-intron	ENST00000358835	ENST00000476769		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000368682		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000354650		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000229471		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000368667		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000368678		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000229470		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000356013		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-5UTR	ENST00000462119	ENST00000538466		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
intron-intron	ENST00000462119	ENST00000476769		TCGA	RV	UCEC	TCGA-PG-A914-01A	REV3L	chr6	111803953	-	FYN	chr6	112041265	-
Frame-shit	ENST00000373825	ENST00000454782		TCGA	RV	UCEC	TCGA-BK-A26L-01A	SRPK1	chr6	35806114	-	PXT1	chr6	36359651	-
In-frame	ENST00000423325	ENST00000454782		TCGA	RV	UCEC	TCGA-BK-A26L-01A	SRPK1	chr6	35806114	-	PXT1	chr6	36359651	-
intron-3CDS	ENST00000373822	ENST00000454782		TCGA	RV	UCEC	TCGA-BK-A26L-01A	SRPK1	chr6	35806114	-	PXT1	chr6	36359651	-
intron-3CDS	ENST00000373821	ENST00000454782		TCGA	RV	UCEC	TCGA-BK-A26L-01A	SRPK1	chr6	35806114	-	PXT1	chr6	36359651	-
Frame-shit	ENST00000400521	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5CDS-5UTR	ENST00000400521	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
Frame-shit	ENST00000400519	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5CDS-5UTR	ENST00000400519	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
Frame-shit	ENST00000535882	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5CDS-5UTR	ENST00000535882	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
Frame-shit	ENST00000334363	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5CDS-5UTR	ENST00000334363	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
Frame-shit	ENST00000400518	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5CDS-5UTR	ENST00000400518	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
Frame-shit	ENST00000542719	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5CDS-5UTR	ENST00000542719	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5UTR-3CDS	ENST00000491939	ENST00000043402		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5UTR-5UTR	ENST00000491939	ENST00000469601		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	TXNRD2	chr22	19918553	-	RTN4R	chr22	20230633	-
5UTR-3CDS	ENST00000291572	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-5UTR	ENST00000291572	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000291572	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000291572	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000291572	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000291572	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3CDS	ENST00000398061	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-5UTR	ENST00000398061	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000398061	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000398061	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000398061	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000398061	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3CDS	ENST00000327505	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-5UTR	ENST00000327505	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000327505	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000327505	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-3UTR	ENST00000327505	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
5UTR-intron	ENST00000327505	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3CDS	ENST00000398063	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-5UTR	ENST00000398063	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000398063	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000398063	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000398063	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398063	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3CDS	ENST00000398058	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-5UTR	ENST00000398058	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000398058	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000398058	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000398058	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000398058	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3CDS	ENST00000546158	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-5UTR	ENST00000546158	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000546158	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000546158	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000546158	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000546158	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3CDS	ENST00000479117	ENST00000335512		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-5UTR	ENST00000479117	ENST00000539837		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000479117	ENST00000470987		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000479117	ENST00000291539		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-3UTR	ENST00000479117	ENST00000398236		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000398229		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000398234		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000398232		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000398227		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000398225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000380328		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000328862		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000335440		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000398224		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
intron-intron	ENST00000479117	ENST00000349112		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	AGPAT3	chr21	45323900	+	PDE9A	chr21	44106302	+
Frame-shit	ENST00000335221	ENST00000361732		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000335221	ENST00000509734		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000335221	ENST00000354868		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000335221	ENST00000521422		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000504177		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000354312		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000345306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000305138		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000282891		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000358030		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000335221	ENST00000380774		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000321892	ENST00000361732		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000321892	ENST00000509734		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000321892	ENST00000354868		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000321892	ENST00000521422		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000504177		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000354312		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000345306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000305138		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000282891		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000358030		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000321892	ENST00000380774		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000306378	ENST00000361732		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000306378	ENST00000509734		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000306378	ENST00000354868		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000306378	ENST00000521422		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000504177		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000354312		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000345306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000305138		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000282891		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000358030		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000306378	ENST00000380774		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000424123	ENST00000361732		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000424123	ENST00000509734		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000424123	ENST00000354868		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000424123	ENST00000521422		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000504177		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000354312		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000345306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000305138		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000282891		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000358030		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
5CDS-intron	ENST00000424123	ENST00000380774		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000577770	ENST00000361732		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000577770	ENST00000509734		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000577770	ENST00000354868		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-3CDS	ENST00000577770	ENST00000521422		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000504177		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000354312		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000345306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000305138		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000282891		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000358030		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
intron-intron	ENST00000577770	ENST00000380774		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	BPTF	chr17	65871860	+	RAD17	chr5	68692224	+
Frame-shit	ENST00000351231	ENST00000420764		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000351231	ENST00000358747		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000351231	ENST00000395550		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000351231	ENST00000383733		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000351231	ENST00000337000		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000351231	ENST00000455886		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000351231	ENST00000482282		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000302506	ENST00000420764		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000302506	ENST00000358747		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000302506	ENST00000395550		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000302506	ENST00000383733		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000302506	ENST00000337000		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
Frame-shit	ENST00000302506	ENST00000455886		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000302506	ENST00000482282		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000459900	ENST00000420764		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000459900	ENST00000358747		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000459900	ENST00000395550		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000459900	ENST00000383733		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000459900	ENST00000337000		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-3CDS	ENST00000459900	ENST00000455886		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
intron-intron	ENST00000459900	ENST00000482282		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	CDC25A	chr3	48229268	-	SLC26A6	chr3	48667144	-
5CDS-intron	ENST00000262367	ENST00000361339		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	CREBBP	chr16	3860604	-	IFT140	chr16	1642589	-
5CDS-intron	ENST00000262367	ENST00000426508		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	CREBBP	chr16	3860604	-	IFT140	chr16	1642589	-
5CDS-5UTR	ENST00000262367	ENST00000439987		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	CREBBP	chr16	3860604	-	IFT140	chr16	1642589	-
5CDS-intron	ENST00000382070	ENST00000361339		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	CREBBP	chr16	3860604	-	IFT140	chr16	1642589	-
5CDS-intron	ENST00000382070	ENST00000426508		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	CREBBP	chr16	3860604	-	IFT140	chr16	1642589	-
5CDS-5UTR	ENST00000382070	ENST00000439987		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	CREBBP	chr16	3860604	-	IFT140	chr16	1642589	-
intron-3CDS	ENST00000373913	ENST00000425933		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373913	ENST00000543599		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373913	ENST00000329082		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373913	ENST00000542321		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000538818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000557301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-intron	ENST00000373913	ENST00000557420		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000556658		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000556087		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000555584		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000425933		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000543599		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000329082		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000542321		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000538818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000557301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-intron	ENST00000401952	ENST00000557420		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000556658		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000556087		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000555584		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000425933		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000543599		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000329082		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000542321		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000538818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000557301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-intron	ENST00000373907	ENST00000557420		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000556658		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000556087		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000555584		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000425933		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000543599		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000329082		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000542321		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000538818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000557301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-intron	ENST00000339266	ENST00000557420		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000556658		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000556087		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000555584		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000475894	ENST00000425933		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000475894	ENST00000543599		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000475894	ENST00000329082		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000475894	ENST00000542321		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000475894	ENST00000538818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000475894	ENST00000557301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-intron	ENST00000475894	ENST00000557420		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000475894	ENST00000556658		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000475894	ENST00000556087		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000475894	ENST00000555584		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
In-frame	ENST00000340491	ENST00000425933		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
In-frame	ENST00000340491	ENST00000543599		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
In-frame	ENST00000340491	ENST00000329082		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
In-frame	ENST00000340491	ENST00000542321		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000340491	ENST00000538818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000340491	ENST00000557301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
5CDS-intron	ENST00000340491	ENST00000557420		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000340491	ENST00000556658		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000340491	ENST00000556087		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
5CDS-5UTR	ENST00000340491	ENST00000555584		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35091002	+	RGMA	chr15	93595737	-
In-frame	ENST00000255078	ENST00000411458		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
In-frame	ENST00000255078	ENST00000539851		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
In-frame	ENST00000255078	ENST00000377702		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
In-frame	ENST00000255078	ENST00000438980		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
In-frame	ENST00000255078	ENST00000313074		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
3UTR-3CDS	ENST00000539224	ENST00000411458		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
3UTR-3CDS	ENST00000539224	ENST00000539851		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
3UTR-3CDS	ENST00000539224	ENST00000377702		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
3UTR-3CDS	ENST00000539224	ENST00000438980		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
3UTR-3CDS	ENST00000539224	ENST00000313074		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
intron-3CDS	ENST00000541229	ENST00000411458		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
intron-3CDS	ENST00000541229	ENST00000539851		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
intron-3CDS	ENST00000541229	ENST00000377702		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
intron-3CDS	ENST00000541229	ENST00000438980		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
intron-3CDS	ENST00000541229	ENST00000313074		TCGA	RV	UCEC	TCGA-SL-A6J9-01A	IGHMBP2	chr11	68679071	+	GPR137	chr11	64055812	+
Frame-shit	ENST00000222249	ENST00000269216		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	KCNN1	chr19	18085996	+	GATA6	chr18	19780619	+
In-frame	ENST00000222249	ENST00000581694		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	KCNN1	chr19	18085996	+	GATA6	chr18	19780619	+
intron-3CDS	ENST00000594192	ENST00000269216		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	KCNN1	chr19	18085996	+	GATA6	chr18	19780619	+
intron-3CDS	ENST00000594192	ENST00000581694		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	KCNN1	chr19	18085996	+	GATA6	chr18	19780619	+
Frame-shit	ENST00000431794	ENST00000269033		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000431794	ENST00000540801		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000431794	ENST00000324677		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000431794	ENST00000582084		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000431794	ENST00000590153		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000431794	ENST00000579954		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000268852	ENST00000269033		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000268852	ENST00000540801		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000268852	ENST00000324677		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000268852	ENST00000582084		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000268852	ENST00000590153		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000268852	ENST00000579954		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000586007	ENST00000269033		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
Frame-shit	ENST00000586007	ENST00000540801		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000586007	ENST00000324677		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000586007	ENST00000582084		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000586007	ENST00000590153		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5CDS-intron	ENST00000586007	ENST00000579954		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-3CDS	ENST00000544606	ENST00000269033		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-3CDS	ENST00000544606	ENST00000540801		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000544606	ENST00000324677		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000544606	ENST00000582084		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000544606	ENST00000590153		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000544606	ENST00000579954		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-3CDS	ENST00000590081	ENST00000269033		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-3CDS	ENST00000590081	ENST00000540801		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000590081	ENST00000324677		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000590081	ENST00000582084		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000590081	ENST00000590153		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
intron-intron	ENST00000590081	ENST00000579954		TCGA	RV	UCEC	TCGA-BK-A26L-01C	MYO19	chr17	34881059	-	SSH2	chr17	28120955	-
5UTR-3CDS	ENST00000341724	ENST00000378137		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000341724	ENST00000325718		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-intron	ENST00000341724	ENST00000579179		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000372004	ENST00000378137		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000372004	ENST00000325718		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-intron	ENST00000372004	ENST00000579179		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000371998	ENST00000378137		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000371998	ENST00000325718		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-intron	ENST00000371998	ENST00000579179		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000371997	ENST00000378137		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-3CDS	ENST00000371997	ENST00000325718		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
5UTR-intron	ENST00000371997	ENST00000579179		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
intron-3CDS	ENST00000497292	ENST00000378137		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
intron-3CDS	ENST00000497292	ENST00000325718		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
intron-intron	ENST00000497292	ENST00000579179		TCGA	RV	UCEC	TCGA-PG-A915-01A	NCOA3	chr20	46130763	+	MLLT6	chr17	36865426	+
intron-3CDS	ENST00000361568	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000361568	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-3CDS	ENST00000395523	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000395523	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-3CDS	ENST00000324816	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000324816	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-3CDS	ENST00000445576	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000445576	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-3CDS	ENST00000437001	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000437001	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000375137	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375137	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000375143	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000375143	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-3CDS	ENST00000493548	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
3UTR-intron	ENST00000493548	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000412651	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000412651	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000457509	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000457509	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000550796	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550796	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000547565	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547565	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000440533	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440533	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000445462	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000445462	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000486923	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000486923	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000550232	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000550232	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000383152	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383152	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000399665	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399665	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000547646	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547646	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000551703	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551703	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000399662	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399662	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000399660	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399660	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000480985	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000480985	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000467040	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000467040	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000487203	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000487203	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000423347	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000423347	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000440507	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000440507	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000551222	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000551222	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000548089	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000548089	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000424353	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000424353	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000452304	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452304	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000459936	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000459936	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000549741	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549741	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000383301	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000383301	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000399860	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399860	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000546871	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000546871	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000399859	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399859	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000399856	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000399856	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000414356	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000414356	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000452562	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000452562	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000552922	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552922	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000549544	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000549544	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000420778	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000420778	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000427556	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000427556	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000483049	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000483049	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000547891	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547891	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000525601	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000525601	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000547508	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547508	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000422988	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000422988	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000547309	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547309	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000552076	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000552076	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000465052	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000465052	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000438385	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000438385	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000456497	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000456497	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000547558	ENST00000449264		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000445232		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000376122		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000420425		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000448781		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000383496		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000412275		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000547558	ENST00000443707		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPT2	chr6	32122181	+	TNF	chr6	31544311	+
Frame-shit	ENST00000555447	ENST00000557771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
Frame-shit	ENST00000555447	ENST00000556336		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000555447	ENST00000400017		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000555447	ENST00000206660		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000555447	ENST00000382933		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000555447	ENST00000553500		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000555447	ENST00000307974		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
In-frame	ENST00000267540	ENST00000557771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
In-frame	ENST00000267540	ENST00000556336		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000267540	ENST00000400017		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000267540	ENST00000206660		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000267540	ENST00000382933		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000267540	ENST00000553500		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
5CDS-intron	ENST00000267540	ENST00000307974		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-3CDS	ENST00000556280	ENST00000557771		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-3CDS	ENST00000556280	ENST00000556336		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-intron	ENST00000556280	ENST00000400017		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-intron	ENST00000556280	ENST00000206660		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-intron	ENST00000556280	ENST00000382933		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-intron	ENST00000556280	ENST00000553500		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
intron-intron	ENST00000556280	ENST00000307974		TCGA	RV	UCEC	TCGA-5B-A90C-01A	STON2	chr14	81837332	-	RPGRIP1	chr14	21756098	+
Frame-shit	ENST00000415609	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000415609	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000415609	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000415609	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000349511	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000349511	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000349511	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000349511	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000361055	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
Frame-shit	ENST00000361055	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000361055	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5CDS-intron	ENST00000361055	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-3CDS	ENST00000540295	ENST00000398540		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-3CDS	ENST00000540295	ENST00000542259		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-intron	ENST00000540295	ENST00000497757		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
intron-intron	ENST00000540295	ENST00000478263		TCGA	RV	UCEC	TCGA-BK-A139-01A	UBA3	chr3	69120686	-	FRMD4B	chr3	69225807	-
5UTR-3CDS	ENST00000346246	ENST00000339865		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
5UTR-5UTR	ENST00000346246	ENST00000539466		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
5UTR-5UTR	ENST00000346246	ENST00000527733		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
5UTR-5UTR	ENST00000346246	ENST00000399455		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
5UTR-intron	ENST00000346246	ENST00000305481		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
intron-3CDS	ENST00000563567	ENST00000339865		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
intron-5UTR	ENST00000563567	ENST00000539466		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
intron-5UTR	ENST00000563567	ENST00000527733		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
intron-5UTR	ENST00000563567	ENST00000399455		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
intron-intron	ENST00000563567	ENST00000305481		TCGA	RV	UCEC	TCGA-BK-A26L-01A	ARID3B	chr15	74833671	+	USP47	chr11	11906014	+
In-frame	ENST00000220496	ENST00000299174		TCGA	RV	UCEC	TCGA-KP-A3W0-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41108451	-
Frame-shit	ENST00000220496	ENST00000427255		TCGA	RV	UCEC	TCGA-KP-A3W0-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41108451	-
intron-3CDS	ENST00000558727	ENST00000299174		TCGA	RV	UCEC	TCGA-KP-A3W0-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41108451	-
intron-3CDS	ENST00000558727	ENST00000427255		TCGA	RV	UCEC	TCGA-KP-A3W0-01A	DNAJC17	chr15	41099567	-	PPP1R14D	chr15	41108451	-
Frame-shit	ENST00000263253	ENST00000514888		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	EP300	chr22	41513825	+	PAICS	chr4	57325538	+
In-frame	ENST00000263253	ENST00000264221		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	EP300	chr22	41513825	+	PAICS	chr4	57325538	+
Frame-shit	ENST00000263253	ENST00000399688		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	EP300	chr22	41513825	+	PAICS	chr4	57325538	+
In-frame	ENST00000263253	ENST00000512576		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	EP300	chr22	41513825	+	PAICS	chr4	57325538	+
Frame-shit	ENST00000327355	ENST00000374012		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
Frame-shit	ENST00000327355	ENST00000439301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
5CDS-3UTR	ENST00000327355	ENST00000481202		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555748	ENST00000374012		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555748	ENST00000439301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3UTR	ENST00000555748	ENST00000481202		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555696	ENST00000374012		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555696	ENST00000439301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3UTR	ENST00000555696	ENST00000481202		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000553393	ENST00000374012		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000553393	ENST00000439301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3UTR	ENST00000553393	ENST00000481202		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555064	ENST00000374012		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555064	ENST00000439301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3UTR	ENST00000555064	ENST00000481202		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555971	ENST00000374012		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3CDS	ENST00000555971	ENST00000439301		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
intron-3UTR	ENST00000555971	ENST00000481202		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	FAM174B	chr15	93198546	-	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000375592	ENST00000294507		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	FBXO42	chr1	16678750	-	LAPTM5	chr1	31215396	-
5UTR-5UTR	ENST00000375592	ENST00000476492		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	FBXO42	chr1	16678750	-	LAPTM5	chr1	31215396	-
intron-3CDS	ENST00000478089	ENST00000294507		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	FBXO42	chr1	16678750	-	LAPTM5	chr1	31215396	-
intron-5UTR	ENST00000478089	ENST00000476492		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	FBXO42	chr1	16678750	-	LAPTM5	chr1	31215396	-
5CDS-5UTR	ENST00000251808	ENST00000311028		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000251808	ENST00000395923		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000251808	ENST00000220931		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000251808	ENST00000521599		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000251808	ENST00000522951		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000251808	ENST00000519508		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-intron	ENST00000251808	ENST00000521371		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000395927	ENST00000311028		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000395927	ENST00000395923		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000395927	ENST00000220931		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000395927	ENST00000521599		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000395927	ENST00000522951		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-5UTR	ENST00000395927	ENST00000519508		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-intron	ENST00000395927	ENST00000521371		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-5UTR	ENST00000517674	ENST00000311028		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-5UTR	ENST00000517674	ENST00000395923		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-5UTR	ENST00000517674	ENST00000220931		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-5UTR	ENST00000517674	ENST00000521599		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-5UTR	ENST00000517674	ENST00000522951		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-5UTR	ENST00000517674	ENST00000519508		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
intron-intron	ENST00000517674	ENST00000521371		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GRHL2	chr8	102611379	+	NCALD	chr8	102731876	-
5CDS-intron	ENST00000403681	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000403681	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000541363	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5CDS-intron	ENST00000393577	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000393578	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000425208	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000536545	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000477496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000460856		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000240874		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000360013		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000393496		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000291478		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000428018		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000459915		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
intron-intron	ENST00000354636	ENST00000462213		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	HMGA2	chr12	66345195	+	KALRN	chr3	124281690	+
5UTR-3CDS	ENST00000361786	ENST00000393774		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-intron	ENST00000361786	ENST00000460005		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-3UTR	ENST00000361786	ENST00000450042		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-intron	ENST00000361786	ENST00000216453		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-3CDS	ENST00000555437	ENST00000393774		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-intron	ENST00000555437	ENST00000460005		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-3UTR	ENST00000555437	ENST00000450042		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-intron	ENST00000555437	ENST00000216453		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-3CDS	ENST00000555611	ENST00000393774		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-intron	ENST00000555611	ENST00000460005		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-3UTR	ENST00000555611	ENST00000450042		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
5UTR-intron	ENST00000555611	ENST00000216453		TCGA	RV	UCEC	TCGA-BK-A139-02A	KIAA1737	chr14	77564704	+	C14orf166B	chr14	77318708	+
Frame-shit	ENST00000319217	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000319217	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000319217	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000319217	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000319217	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
Frame-shit	ENST00000541718	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000541718	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000541718	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000541718	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000541718	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
In-frame	ENST00000381022	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381022	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381022	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381022	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381022	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-3CDS	ENST00000541093	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000541093	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000541093	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000541093	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000541093	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-3CDS	ENST00000538841	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000538841	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000538841	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000538841	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000538841	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
In-frame	ENST00000536827	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000536827	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000536827	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000536827	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000536827	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
In-frame	ENST00000447879	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000447879	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000447879	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000447879	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000447879	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
In-frame	ENST00000381015	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381015	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381015	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381015	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000381015	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
Frame-shit	ENST00000546205	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000546205	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000546205	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000546205	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
5CDS-intron	ENST00000546205	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-3CDS	ENST00000540202	ENST00000267615		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000540202	ENST00000354313		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000540202	ENST00000556603		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000540202	ENST00000555495		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
intron-intron	ENST00000540202	ENST00000556954		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	MPDZ	chr9	13247634	-	ITPK1	chr14	93408249	-
Frame-shit	ENST00000311028	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000311028	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000311028	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000311028	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
5CDS-intron	ENST00000311028	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000395923	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000395923	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000395923	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000395923	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
5CDS-intron	ENST00000395923	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000220931	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000220931	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000220931	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000220931	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
5CDS-intron	ENST00000220931	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000521599	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000521599	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000521599	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000521599	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
5CDS-intron	ENST00000521599	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000522951	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000522951	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000522951	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000522951	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
5CDS-intron	ENST00000522951	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000519508	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000519508	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
In-frame	ENST00000519508	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000519508	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
5CDS-intron	ENST00000519508	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
intron-3CDS	ENST00000521371	ENST00000520539		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
intron-3CDS	ENST00000521371	ENST00000220959		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
intron-3CDS	ENST00000521371	ENST00000518205		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
intron-3CDS	ENST00000521371	ENST00000521922		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
intron-intron	ENST00000521371	ENST00000519528		TCGA	RV	UCEC	TCGA-PG-A914-01A	NCALD	chr8	102731480	-	UBR5	chr8	103266742	-
Frame-shit	ENST00000173229	ENST00000405486		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000173229	ENST00000356244		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000173229	ENST00000455915		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000173229	ENST00000407260		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000538852	ENST00000405486		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000538852	ENST00000356244		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000538852	ENST00000455915		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000538852	ENST00000407260		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000546090	ENST00000405486		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000546090	ENST00000356244		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000546090	ENST00000455915		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
Frame-shit	ENST00000546090	ENST00000407260		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NTN1	chr17	8926708	+	RANGAP1	chr22	41664160	-
In-frame	ENST00000373664	ENST00000371440		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
Frame-shit	ENST00000373664	ENST00000371435		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
In-frame	ENST00000373664	ENST00000395961		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
In-frame	ENST00000373664	ENST00000434986		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
5CDS-intron	ENST00000373664	ENST00000411563		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
In-frame	ENST00000344359	ENST00000371440		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
Frame-shit	ENST00000344359	ENST00000371435		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
In-frame	ENST00000344359	ENST00000395961		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
In-frame	ENST00000344359	ENST00000434986		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
5CDS-intron	ENST00000344359	ENST00000411563		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
intron-3CDS	ENST00000598590	ENST00000371440		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
intron-3CDS	ENST00000598590	ENST00000371435		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
intron-3CDS	ENST00000598590	ENST00000395961		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
intron-3CDS	ENST00000598590	ENST00000434986		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
intron-intron	ENST00000598590	ENST00000411563		TCGA	RV	UCEC	TCGA-EY-A547-01A	RBL1	chr20	35651053	-	BCAS1	chr20	52561535	-
Frame-shit	ENST00000374550	ENST00000263593		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	RPL11	chr1	24022915	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000374550	ENST00000545756		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	RPL11	chr1	24022915	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000374550	ENST00000525730		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	RPL11	chr1	24022915	+	SIAE	chr11	124543777	-
intron-3CDS	ENST00000482370	ENST00000263593		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	RPL11	chr1	24022915	+	SIAE	chr11	124543777	-
intron-intron	ENST00000482370	ENST00000545756		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	RPL11	chr1	24022915	+	SIAE	chr11	124543777	-
intron-intron	ENST00000482370	ENST00000525730		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	RPL11	chr1	24022915	+	SIAE	chr11	124543777	-
5CDS-intron	ENST00000278742	ENST00000532456		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000539648		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000528499		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000263574		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000345598		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000338167		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000278756		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
5CDS-intron	ENST00000278742	ENST00000543137		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	ST14	chr11	130078579	+	APLP2	chr11	130010293	+
In-frame	ENST00000322652	ENST00000356175		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
In-frame	ENST00000322652	ENST00000358273		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000322652	ENST00000431387		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000322652	ENST00000581113		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000322652	ENST00000417592		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000322652	ENST00000444181		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
In-frame	ENST00000580398	ENST00000356175		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
In-frame	ENST00000580398	ENST00000358273		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000580398	ENST00000431387		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000580398	ENST00000581113		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000580398	ENST00000417592		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
5CDS-intron	ENST00000580398	ENST00000444181		TCGA	RV	UCEC	TCGA-BK-A139-01A	SUZ12	chr17	30303633	+	NF1	chr17	29576002	+
Frame-shit	ENST00000339656	ENST00000415300		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000339656	ENST00000448930		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000339656	ENST00000302804		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-intron	ENST00000339656	ENST00000599062		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000339656	ENST00000598785		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
Frame-shit	ENST00000423137	ENST00000415300		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000423137	ENST00000448930		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000423137	ENST00000302804		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-intron	ENST00000423137	ENST00000599062		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
5CDS-5UTR	ENST00000423137	ENST00000598785		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-3CDS	ENST00000419854	ENST00000415300		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-5UTR	ENST00000419854	ENST00000448930		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-5UTR	ENST00000419854	ENST00000302804		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-intron	ENST00000419854	ENST00000599062		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-5UTR	ENST00000419854	ENST00000598785		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-3CDS	ENST00000596433	ENST00000415300		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-5UTR	ENST00000596433	ENST00000448930		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-5UTR	ENST00000596433	ENST00000302804		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-intron	ENST00000596433	ENST00000599062		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
intron-5UTR	ENST00000596433	ENST00000598785		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF587	chr19	58361439	+	AURKC	chr19	57743110	+
In-frame	ENST00000256997	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
In-frame	ENST00000256997	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000256997	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000256997	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-intron	ENST00000256997	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000256997	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000529444	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000529444	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000529444	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000529444	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-intron	ENST00000529444	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000529444	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
In-frame	ENST00000527256	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
In-frame	ENST00000527256	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000527256	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000527256	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-intron	ENST00000527256	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000527256	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
Frame-shit	ENST00000537863	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
Frame-shit	ENST00000537863	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000537863	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000537863	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-intron	ENST00000537863	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000537863	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
In-frame	ENST00000533929	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
In-frame	ENST00000533929	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000533929	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000533929	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-intron	ENST00000533929	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5CDS-5UTR	ENST00000533929	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000525230	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000525230	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000525230	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000525230	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-intron	ENST00000525230	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000525230	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000530453	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000530453	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000530453	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000530453	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-intron	ENST00000530453	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000530453	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000444355	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000444355	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000444355	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000444355	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-intron	ENST00000444355	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000444355	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000529788	ENST00000310614		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-3CDS	ENST00000529788	ENST00000535529		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000529788	ENST00000411840		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000529788	ENST00000398483		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-intron	ENST00000529788	ENST00000542303		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
intron-5UTR	ENST00000529788	ENST00000314282		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	ACP2	chr11	47266856	-	MRPL48	chr11	73555852	+
5UTR-3CDS	ENST00000378330	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-3CDS	ENST00000301030	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-3CDS	ENST00000563291	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-3CDS	ENST00000567736	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-02A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
In-frame	ENST00000421745	ENST00000407540		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	BIRC6	chr2	32641231	+	MATN3	chr2	20206071	-
In-frame	ENST00000421745	ENST00000421259		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	BIRC6	chr2	32641231	+	MATN3	chr2	20206071	-
intron-intron	ENST00000548898	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000548898	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000548898	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000552067	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000552067	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000552067	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000420846	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000420846	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000420846	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000548160	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000548160	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000548160	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000546939	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000546939	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000546939	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552692	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552692	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552692	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000549117	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000549117	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000549117	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000257857	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000257857	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000257857	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552754	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552754	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000552754	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000550776	ENST00000360359		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000550776	ENST00000535627		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000550776	ENST00000470698		TCGA	RV	UCEC	TCGA-AJ-A3BG-01A	CD63	chr12	56119232	-	ANKS1A	chr6	34977682	+
5UTR-3CDS	ENST00000368655	ENST00000361069		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	GATAD2B	chr1	153895209	-	LAMC3	chr9	133936422	+
5UTR-intron	ENST00000368655	ENST00000480883		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	GATAD2B	chr1	153895209	-	LAMC3	chr9	133936422	+
intron-3CDS	ENST00000383737	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000395734	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000426837	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000360240	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000439356	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000264724	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000420772	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000441748	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000462206	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000434267	ENST00000434006		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	MAP4	chr3	47956307	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000215061	ENST00000445667		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
Frame-shit	ENST00000215061	ENST00000263897		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-intron	ENST00000215061	ENST00000595101		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-intron	ENST00000215061	ENST00000596136		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-intron	ENST00000215061	ENST00000379776		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
3UTR-3CDS	ENST00000601576	ENST00000445667		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
3UTR-3CDS	ENST00000601576	ENST00000263897		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
3UTR-intron	ENST00000601576	ENST00000595101		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
3UTR-intron	ENST00000601576	ENST00000596136		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
3UTR-intron	ENST00000601576	ENST00000379776		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
Frame-shit	ENST00000601529	ENST00000445667		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
Frame-shit	ENST00000601529	ENST00000263897		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-intron	ENST00000601529	ENST00000595101		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-intron	ENST00000601529	ENST00000596136		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-intron	ENST00000601529	ENST00000379776		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
intron-3CDS	ENST00000597836	ENST00000445667		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
intron-3CDS	ENST00000597836	ENST00000263897		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
intron-intron	ENST00000597836	ENST00000595101		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
intron-intron	ENST00000597836	ENST00000596136		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
intron-intron	ENST00000597836	ENST00000379776		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	OCEL1	chr19	17337125	+	USE1	chr19	17330022	+
5CDS-5UTR	ENST00000535572	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000535572	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000535572	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000535572	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000535572	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000535572	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000537687	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000537687	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000537687	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000537687	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000537687	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000537687	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000315939	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000315939	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000315939	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000315939	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000315939	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000315939	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000447667	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000447667	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000447667	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000447667	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000447667	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000447667	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000530271	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000530271	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000530271	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-5UTR	ENST00000530271	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000530271	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
5CDS-intron	ENST00000530271	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000540360	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000540360	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000540360	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000540360	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000540360	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000540360	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000340908	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000340908	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000340908	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000340908	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000340908	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000340908	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000574564	ENST00000393029		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000574564	ENST00000393028		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000574564	ENST00000345425		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-5UTR	ENST00000574564	ENST00000393033		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000574564	ENST00000591349		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
intron-intron	ENST00000574564	ENST00000586027		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	WNK1	chr12	863490	+	GIPC1	chr19	14603724	-
Frame-shit	ENST00000359867	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000359867	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5CDS-intron	ENST00000359867	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000396832	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000396832	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5CDS-intron	ENST00000396832	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
In-frame	ENST00000400206	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
In-frame	ENST00000400206	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5CDS-intron	ENST00000400206	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000403904	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000403904	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5CDS-intron	ENST00000403904	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000413574	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000413574	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5CDS-intron	ENST00000413574	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000405675	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
Frame-shit	ENST00000405675	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5CDS-intron	ENST00000405675	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5UTR-3CDS	ENST00000498529	ENST00000216024		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5UTR-3CDS	ENST00000498529	ENST00000428462		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
5UTR-intron	ENST00000498529	ENST00000464842		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	CSNK1E	chr22	38694791	-	DMC1	chr22	38958374	-
In-frame	ENST00000603302	ENST00000296522		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
In-frame	ENST00000603302	ENST00000296521		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000603302	ENST00000510901		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-intron	ENST00000603302	ENST00000422112		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000603302	ENST00000541923		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000603302	ENST00000542498		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000603302	ENST00000504433		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
In-frame	ENST00000403312	ENST00000296522		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
In-frame	ENST00000403312	ENST00000296521		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000403312	ENST00000510901		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-intron	ENST00000403312	ENST00000422112		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000403312	ENST00000541923		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000403312	ENST00000542498		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000403312	ENST00000504433		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
In-frame	ENST00000309522	ENST00000296522		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
In-frame	ENST00000309522	ENST00000296521		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000309522	ENST00000510901		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-intron	ENST00000309522	ENST00000422112		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000309522	ENST00000541923		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000309522	ENST00000542498		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000309522	ENST00000504433		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-3CDS	ENST00000505878	ENST00000296522		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-3CDS	ENST00000505878	ENST00000296521		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-5UTR	ENST00000505878	ENST00000510901		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-intron	ENST00000505878	ENST00000422112		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-5UTR	ENST00000505878	ENST00000541923		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-5UTR	ENST00000505878	ENST00000542498		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5UTR-5UTR	ENST00000505878	ENST00000504433		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-3CDS	ENST00000454409	ENST00000296522		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-3CDS	ENST00000454409	ENST00000296521		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000454409	ENST00000510901		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-intron	ENST00000454409	ENST00000422112		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000454409	ENST00000541923		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000454409	ENST00000542498		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000454409	ENST00000504433		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-3CDS	ENST00000510728	ENST00000296522		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-3CDS	ENST00000510728	ENST00000296521		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000510728	ENST00000510901		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-intron	ENST00000510728	ENST00000422112		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000510728	ENST00000541923		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000510728	ENST00000542498		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
intron-5UTR	ENST00000510728	ENST00000504433		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	HADH	chr4	108911220	+	HPGD	chr4	175429943	-
5CDS-5UTR	ENST00000381095	ENST00000378707		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381095	ENST00000359836		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381095	ENST00000541735		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381095	ENST00000343523		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381095	ENST00000378677		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381095	ENST00000357033		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381095	ENST00000474231		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381095	ENST00000378723		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381095	ENST00000378702		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381095	ENST00000361471		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381095	ENST00000378680		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381095	ENST00000288447		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381095	ENST00000445312		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000378707		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000359836		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000541735		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000343523		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000378677		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000357033		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381093	ENST00000474231		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381093	ENST00000378723		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381093	ENST00000378702		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381093	ENST00000361471		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381093	ENST00000378680		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381093	ENST00000288447		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381093	ENST00000445312		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000378707		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000359836		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000541735		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000343523		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000378677		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000357033		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000275857	ENST00000474231		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000275857	ENST00000378723		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000275857	ENST00000378702		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000275857	ENST00000361471		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000275857	ENST00000378680		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000275857	ENST00000288447		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000275857	ENST00000445312		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000378707		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000359836		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000541735		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000343523		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000378677		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000357033		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000381092	ENST00000474231		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381092	ENST00000378723		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381092	ENST00000378702		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381092	ENST00000361471		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381092	ENST00000378680		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381092	ENST00000288447		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000381092	ENST00000445312		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000378707		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000359836		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000541735		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000343523		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000378677		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000357033		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-5UTR	ENST00000538097	ENST00000474231		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000538097	ENST00000378723		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000538097	ENST00000378702		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000538097	ENST00000361471		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000538097	ENST00000378680		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000538097	ENST00000288447		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5CDS-intron	ENST00000538097	ENST00000445312		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000378707		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000359836		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000541735		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000343523		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000378677		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000357033		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-5UTR	ENST00000469740	ENST00000474231		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-intron	ENST00000469740	ENST00000378723		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-intron	ENST00000469740	ENST00000378702		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-intron	ENST00000469740	ENST00000361471		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-intron	ENST00000469740	ENST00000378680		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-intron	ENST00000469740	ENST00000288447		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
intron-intron	ENST00000469740	ENST00000445312		TCGA	RV	UCEC	TCGA-BK-A26L-01A	NLGN4X	chrX	5947321	-	DMD	chrX	31792309	-
5UTR-3CDS	ENST00000391875	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000391875	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000391875	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000391875	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000391875	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000391875	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000391875	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-intron	ENST00000391875	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000281701	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000281701	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000281701	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000281701	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000281701	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000281701	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000281701	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-intron	ENST00000281701	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000469075	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000469075	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000469075	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
Frame-shit	ENST00000469075	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000469075	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000469075	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-5UTR	ENST00000469075	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5CDS-intron	ENST00000469075	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000482491	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000482491	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000482491	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000482491	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000482491	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000482491	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000482491	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-intron	ENST00000482491	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000340871	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000340871	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000340871	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000340871	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000340871	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000340871	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000340871	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-intron	ENST00000340871	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000361463	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000361463	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000361463	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000361463	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000361463	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000361463	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000361463	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-intron	ENST00000361463	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000468673	ENST00000343846		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000468673	ENST00000366878		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000468673	ENST00000484758		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-3CDS	ENST00000468673	ENST00000494793		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000468673	ENST00000478605		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000468673	ENST00000454695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-5UTR	ENST00000468673	ENST00000344029		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
5UTR-intron	ENST00000468673	ENST00000366877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224517773	-	SUSD4	chr1	223442017	-
intron-3CDS	ENST00000598913	ENST00000601387		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000598913	ENST00000597595		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000598913	ENST00000598034		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000598913	ENST00000600322		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000598913	ENST00000602185		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000598913	ENST00000253054		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-intron	ENST00000598913	ENST00000594700		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-intron	ENST00000598913	ENST00000595636		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000314471	ENST00000601387		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000314471	ENST00000597595		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000314471	ENST00000598034		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000314471	ENST00000600322		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000314471	ENST00000602185		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-3CDS	ENST00000314471	ENST00000253054		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-intron	ENST00000314471	ENST00000594700		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
5UTR-intron	ENST00000314471	ENST00000595636		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000594204	ENST00000601387		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000594204	ENST00000597595		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000594204	ENST00000598034		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000594204	ENST00000600322		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000594204	ENST00000602185		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000594204	ENST00000253054		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-intron	ENST00000594204	ENST00000594700		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-intron	ENST00000594204	ENST00000595636		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000596368	ENST00000601387		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000596368	ENST00000597595		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000596368	ENST00000598034		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000596368	ENST00000600322		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000596368	ENST00000602185		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-3CDS	ENST00000596368	ENST00000253054		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-intron	ENST00000596368	ENST00000594700		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
intron-intron	ENST00000596368	ENST00000595636		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	SAMD4B	chr19	39844706	+	GMFG	chr19	39823766	-
In-frame	ENST00000215790	ENST00000347528		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000215790	ENST00000289734		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000215790	ENST00000379758		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000215790	ENST00000396942		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000215790	ENST00000396945		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000215790	ENST00000352337		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000215790	ENST00000265709		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000215790	ENST00000457297		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000215790	ENST00000522231		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000215790	ENST00000522543		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000215790	ENST00000314214		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000215790	ENST00000521407		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000347528		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000289734		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000379758		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000396942		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000396945		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000352337		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000403477	ENST00000265709		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403477	ENST00000457297		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403477	ENST00000522231		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403477	ENST00000522543		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403477	ENST00000314214		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403477	ENST00000521407		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000347528		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000289734		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000379758		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000396942		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000396945		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000352337		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
Frame-shit	ENST00000403362	ENST00000265709		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403362	ENST00000457297		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403362	ENST00000522231		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403362	ENST00000522543		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403362	ENST00000314214		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5CDS-intron	ENST00000403362	ENST00000521407		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000347528		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000289734		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000379758		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000396942		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000396945		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000352337		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-3CDS	ENST00000490449	ENST00000265709		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-intron	ENST00000490449	ENST00000457297		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-intron	ENST00000490449	ENST00000522231		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-intron	ENST00000490449	ENST00000522543		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-intron	ENST00000490449	ENST00000314214		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
5UTR-intron	ENST00000490449	ENST00000521407		TCGA	RV	UCEC	TCGA-PG-A914-01A	TBC1D10A	chr22	30700520	-	ANK1	chr8	41591587	-
In-frame	ENST00000335464	ENST00000262613		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000335464	ENST00000413388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000417024	ENST00000262613		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000417024	ENST00000413388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000582773	ENST00000262613		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000582773	ENST00000413388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000582330	ENST00000262613		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000582330	ENST00000413388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
intron-3CDS	ENST00000584171	ENST00000262613		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
intron-5UTR	ENST00000584171	ENST00000413388		TCGA	RV	UCEC	TCGA-EO-A3AS-01A	TMEM104	chr17	72773514	+	SLC9A3R1	chr17	72758151	+
5UTR-5UTR	ENST00000338754	ENST00000215939		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	TPST2	chr22	26986017	-	CRYBB1	chr22	27012302	-
intron-5UTR	ENST00000398110	ENST00000215939		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	TPST2	chr22	26986017	-	CRYBB1	chr22	27012302	-
intron-5UTR	ENST00000403880	ENST00000215939		TCGA	RV	UCEC	TCGA-EO-A3KW-01A	TPST2	chr22	26986017	-	CRYBB1	chr22	27012302	-
Frame-shit	ENST00000372899	ENST00000586659		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372899	ENST00000355150		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372899	ENST00000432929		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372899	ENST00000587317		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372899	ENST00000589359		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372899	ENST00000589894		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372901	ENST00000586659		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372901	ENST00000355150		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372901	ENST00000432929		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372901	ENST00000587317		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372901	ENST00000589359		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372901	ENST00000589894		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
intron-3CDS	ENST00000372883	ENST00000586659		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
intron-3CDS	ENST00000372883	ENST00000355150		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
intron-3CDS	ENST00000372883	ENST00000432929		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
intron-intron	ENST00000372883	ENST00000587317		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
intron-intron	ENST00000372883	ENST00000589359		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
intron-intron	ENST00000372883	ENST00000589894		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372903	ENST00000586659		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372903	ENST00000355150		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
Frame-shit	ENST00000372903	ENST00000432929		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372903	ENST00000587317		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372903	ENST00000589359		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-intron	ENST00000372903	ENST00000589894		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	UBR2	chr6	42532135	+	KANK2	chr19	11287493	-
5CDS-5UTR	ENST00000374126	ENST00000314256		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000374126	ENST00000579208		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000374126	ENST00000375248		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000374126	ENST00000583795		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000288466	ENST00000314256		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-5UTR	ENST00000288466	ENST00000579208		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000288466	ENST00000375248		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5CDS-intron	ENST00000288466	ENST00000583795		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
intron-5UTR	ENST00000470105	ENST00000314256		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
intron-5UTR	ENST00000470105	ENST00000579208		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
intron-intron	ENST00000470105	ENST00000375248		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
intron-intron	ENST00000470105	ENST00000583795		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ZNF618	chr9	116638693	+	KIAA0195	chr17	73467881	+
5UTR-3CDS	ENST00000378330	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000378330	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-3CDS	ENST00000301030	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-intron	ENST00000301030	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-3CDS	ENST00000563291	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000563291	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-3CDS	ENST00000567736	ENST00000397901		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000253475		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000535997		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000550102		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
intron-intron	ENST00000567736	ENST00000547614		TCGA	RV	UCEC	TCGA-BK-A139-01A	ANKRD11	chr16	89484692	-	CHMP1A	chr16	89720331	-
5UTR-3CDS	ENST00000368346	ENST00000361170		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ASH1L	chr1	155531944	-	IQGAP3	chr1	156501039	-
5UTR-intron	ENST00000368346	ENST00000498755		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ASH1L	chr1	155531944	-	IQGAP3	chr1	156501039	-
5UTR-3CDS	ENST00000392403	ENST00000361170		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ASH1L	chr1	155531944	-	IQGAP3	chr1	156501039	-
5UTR-intron	ENST00000392403	ENST00000498755		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ASH1L	chr1	155531944	-	IQGAP3	chr1	156501039	-
5UTR-3CDS	ENST00000548830	ENST00000361170		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ASH1L	chr1	155531944	-	IQGAP3	chr1	156501039	-
5UTR-intron	ENST00000548830	ENST00000498755		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	ASH1L	chr1	155531944	-	IQGAP3	chr1	156501039	-
intron-3CDS	ENST00000375028	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000375028	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000375028	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-3CDS	ENST00000375030	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5UTR-intron	ENST00000375030	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
Frame-shit	ENST00000375025	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-intron	ENST00000375025	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000277657		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-3CDS	ENST00000572165	ENST00000362006		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000545067		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000535327		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000539197		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000537047		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
intron-intron	ENST00000572165	ENST00000489718		TCGA	RV	UCEC	TCGA-BK-A0CA-01A	C10orf68	chr10	32873232	+	CCDC7	chr10	32832228	+
5CDS-5UTR	ENST00000415807	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
5CDS-5UTR	ENST00000336824	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
5CDS-5UTR	ENST00000416957	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
5CDS-5UTR	ENST00000392699	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
5CDS-5UTR	ENST00000421757	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
5CDS-5UTR	ENST00000423424	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
intron-5UTR	ENST00000476794	ENST00000263967		TCGA	RV	UCEC	TCGA-BK-A56F-01A	FNDC3B	chr3	171851336	+	PIK3CA	chr3	178916538	+
intron-3CDS	ENST00000583983	ENST00000580435		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
intron-3CDS	ENST00000583983	ENST00000392359		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
intron-3CDS	ENST00000583983	ENST00000306704		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
intron-3CDS	ENST00000583983	ENST00000584347		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
intron-5UTR	ENST00000583983	ENST00000583767		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000578552	ENST00000580435		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000578552	ENST00000392359		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000578552	ENST00000306704		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000578552	ENST00000584347		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5CDS-5UTR	ENST00000578552	ENST00000583767		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000320548	ENST00000580435		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000320548	ENST00000392359		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000320548	ENST00000306704		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000320548	ENST00000584347		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-5UTR	ENST00000320548	ENST00000583767		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000355130	ENST00000580435		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000355130	ENST00000392359		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000355130	ENST00000306704		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000355130	ENST00000584347		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-5UTR	ENST00000355130	ENST00000583767		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000306823	ENST00000580435		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000306823	ENST00000392359		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000306823	ENST00000306704		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000306823	ENST00000584347		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5CDS-5UTR	ENST00000306823	ENST00000583767		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000392358	ENST00000580435		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000392358	ENST00000392359		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000392358	ENST00000306704		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-3CDS	ENST00000392358	ENST00000584347		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
5UTR-5UTR	ENST00000392358	ENST00000583767		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	STRA13	chr17	79977785	-
In-frame	ENST00000264833	ENST00000304457		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
In-frame	ENST00000264833	ENST00000376936		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
Frame-shit	ENST00000264833	ENST00000544779		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
5CDS-intron	ENST00000264833	ENST00000485606		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000590841	ENST00000304457		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000590841	ENST00000376936		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
intron-3CDS	ENST00000590841	ENST00000544779		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
intron-intron	ENST00000590841	ENST00000485606		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	OLFM2	chr19	10046980	-	EXOSC10	chr1	11137708	-
In-frame	ENST00000545260	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000545260	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000545260	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000545693	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000545693	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000545693	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000350537	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000350537	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000350537	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000346874	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000346874	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000346874	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374789	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374789	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374789	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374790	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374790	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374790	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374794	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374794	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374794	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374788	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374788	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374788	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000466092	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000466092	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000466092	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374776	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374776	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374776	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000340077	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000340077	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000340077	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000544292	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000544292	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000544292	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374773	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374773	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
In-frame	ENST00000374773	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000374768	ENST00000379959		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000374768	ENST00000379954		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
intron-3CDS	ENST00000374768	ENST00000256876		TCGA	RV	UCEC	TCGA-AJ-A3TW-01A	PARD3	chr10	34805907	-	IL2RA	chr10	6067988	-
5CDS-3UTR	ENST00000334956	ENST00000310358		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	PARVA	chr11	12499496	+	SPON1	chr11	14156966	+
5CDS-3UTR	ENST00000539723	ENST00000310358		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	PARVA	chr11	12499496	+	SPON1	chr11	14156966	+
5CDS-3UTR	ENST00000550549	ENST00000310358		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	PARVA	chr11	12499496	+	SPON1	chr11	14156966	+
5CDS-3UTR	ENST00000538608	ENST00000310358		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	PARVA	chr11	12499496	+	SPON1	chr11	14156966	+
intron-3UTR	ENST00000526746	ENST00000310358		TCGA	RV	UCEC	TCGA-EO-A3KU-01A	PARVA	chr11	12499496	+	SPON1	chr11	14156966	+
In-frame	ENST00000252485	ENST00000358777		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PVRL2	chr19	45349870	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000252485	ENST00000403660		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PVRL2	chr19	45349870	+	CEACAM19	chr19	45175868	+
5CDS-3UTR	ENST00000252485	ENST00000480278		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PVRL2	chr19	45349870	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000252483	ENST00000358777		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PVRL2	chr19	45349870	+	CEACAM19	chr19	45175868	+
In-frame	ENST00000252483	ENST00000403660		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PVRL2	chr19	45349870	+	CEACAM19	chr19	45175868	+
5CDS-3UTR	ENST00000252483	ENST00000480278		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	PVRL2	chr19	45349870	+	CEACAM19	chr19	45175868	+
Frame-shit	ENST00000508628	ENST00000391875		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000508628	ENST00000281701		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000508628	ENST00000469075		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000508628	ENST00000482491		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000508628	ENST00000340871		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000508628	ENST00000361463		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
5CDS-intron	ENST00000508628	ENST00000468673		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000456466	ENST00000391875		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000456466	ENST00000281701		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000456466	ENST00000469075		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000456466	ENST00000482491		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000456466	ENST00000340871		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000456466	ENST00000361463		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-intron	ENST00000456466	ENST00000468673		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000582970	ENST00000391875		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000582970	ENST00000281701		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000582970	ENST00000469075		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000582970	ENST00000482491		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000582970	ENST00000340871		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000582970	ENST00000361463		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
5CDS-intron	ENST00000582970	ENST00000468673		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000319921	ENST00000391875		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000319921	ENST00000281701		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000319921	ENST00000469075		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000319921	ENST00000482491		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000319921	ENST00000340871		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000319921	ENST00000361463		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-intron	ENST00000319921	ENST00000468673		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000336301	ENST00000391875		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000336301	ENST00000281701		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000336301	ENST00000469075		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000336301	ENST00000482491		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000336301	ENST00000340871		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000336301	ENST00000361463		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
5CDS-intron	ENST00000336301	ENST00000468673		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000427003	ENST00000391875		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000427003	ENST00000281701		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000427003	ENST00000469075		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000427003	ENST00000482491		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000427003	ENST00000340871		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-3CDS	ENST00000427003	ENST00000361463		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
intron-intron	ENST00000427003	ENST00000468673		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	RNF213	chr17	78337114	+	NVL	chr1	224482113	-
Frame-shit	ENST00000407215	ENST00000393408		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
Frame-shit	ENST00000407215	ENST00000225603		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
Frame-shit	ENST00000407215	ENST00000495350		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
Frame-shit	ENST00000290216	ENST00000393408		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
Frame-shit	ENST00000290216	ENST00000225603		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
Frame-shit	ENST00000290216	ENST00000495350		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
In-frame	ENST00000584123	ENST00000393408		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
In-frame	ENST00000584123	ENST00000225603		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
In-frame	ENST00000584123	ENST00000495350		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SCRN2	chr17	45918036	-	CBX1	chr17	46152462	-
Frame-shit	ENST00000368761	ENST00000368682		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000354650		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000229471		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000368667		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000368678		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000229470		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000356013		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368761	ENST00000538466		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5CDS-intron	ENST00000368761	ENST00000476769		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000368682		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000354650		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000229471		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000368667		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000368678		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000229470		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000356013		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000359831	ENST00000538466		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5CDS-intron	ENST00000359831	ENST00000476769		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000368682		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000354650		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000229471		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000368667		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000368678		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000229470		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000356013		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000392556	ENST00000538466		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5CDS-intron	ENST00000392556	ENST00000476769		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000368682		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000354650		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000229471		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000368667		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000368678		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000229470		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000356013		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000340026	ENST00000538466		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5CDS-intron	ENST00000340026	ENST00000476769		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000368682		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000354650		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000229471		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000368667		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000368678		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000229470		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000356013		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-3CDS	ENST00000368731	ENST00000538466		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5UTR-intron	ENST00000368731	ENST00000476769		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000368682		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000354650		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000229471		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000368667		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000368678		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000229470		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000356013		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
Frame-shit	ENST00000368735	ENST00000538466		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
5CDS-intron	ENST00000368735	ENST00000476769		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	TRAF3IP2	chr6	111887647	-	FYN	chr6	111995833	-
In-frame	ENST00000351097	ENST00000361582		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000351097	ENST00000463306		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000285679	ENST00000361582		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000285679	ENST00000463306		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000285681	ENST00000361582		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000285681	ENST00000463306		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000400183	ENST00000361582		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
In-frame	ENST00000400183	ENST00000463306		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
3UTR-3CDS	ENST00000547201	ENST00000361582		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
3UTR-3CDS	ENST00000547201	ENST00000463306		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	USP25	chr21	17163983	+	DZIP3	chr3	108392925	+
5CDS-5UTR	ENST00000234392	ENST00000244221		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	VAX2	chr2	71127998	+	PAIP2B	chr2	71429730	-
5UTR-3CDS	ENST00000456324	ENST00000269919		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000456324	ENST00000604499		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000456324	ENST00000595066		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000456324	ENST00000252813		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000456324	ENST00000597431		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
3UTR-3CDS	ENST00000586094	ENST00000269919		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
3UTR-intron	ENST00000586094	ENST00000604499		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
3UTR-intron	ENST00000586094	ENST00000595066		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
3UTR-intron	ENST00000586094	ENST00000252813		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
3UTR-intron	ENST00000586094	ENST00000597431		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-3CDS	ENST00000443387	ENST00000269919		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000443387	ENST00000604499		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000443387	ENST00000595066		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000443387	ENST00000252813		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5UTR-intron	ENST00000443387	ENST00000597431		TCGA	RV	UCEC	TCGA-PG-A914-01A	ZNF146	chr19	36719721	+	PGPEP1	chr19	18474201	+
5CDS-intron	ENST00000359904	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359904	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359904	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359904	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000580753	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000580753	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000580753	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000580753	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000392720	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000392720	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000392720	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000392720	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359783	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359783	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359783	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000359783	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577866	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577866	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577866	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577866	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
3UTR-intron	ENST00000585050	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
3UTR-intron	ENST00000585050	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
3UTR-intron	ENST00000585050	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
3UTR-intron	ENST00000585050	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577985	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577985	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577985	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577985	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577273	ENST00000546309		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577273	ENST00000397244		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577273	ENST00000388870		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
5CDS-intron	ENST00000577273	ENST00000297792		TCGA	RV	UCEC	TCGA-PG-A914-01A	AMZ2	chr17	66247319	+	KDM1B	chr6	18205768	+
Frame-shit	ENST00000336868	ENST00000301335		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
Frame-shit	ENST00000336868	ENST00000571650		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
Frame-shit	ENST00000336868	ENST00000382147		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
5CDS-intron	ENST00000336868	ENST00000412517		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
5CDS-intron	ENST00000336868	ENST00000574274		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000577098	ENST00000301335		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000577098	ENST00000571650		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000577098	ENST00000382147		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000577098	ENST00000412517		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000577098	ENST00000574274		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000575801	ENST00000301335		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000575801	ENST00000571650		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000575801	ENST00000382147		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000575801	ENST00000412517		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000575801	ENST00000574274		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000538650	ENST00000301335		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000538650	ENST00000571650		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000538650	ENST00000382147		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000538650	ENST00000412517		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000538650	ENST00000574274		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000537628	ENST00000301335		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000537628	ENST00000571650		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000537628	ENST00000382147		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000537628	ENST00000412517		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-intron	ENST00000537628	ENST00000574274		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NXN	chr17	882559	-	SLC43A2	chr17	1518328	-
intron-3CDS	ENST00000543117	ENST00000354171		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
intron-3CDS	ENST00000543117	ENST00000589115		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000265393	ENST00000354171		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000265393	ENST00000589115		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000409980	ENST00000354171		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000409980	ENST00000589115		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000433216	ENST00000354171		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000433216	ENST00000589115		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000396319	ENST00000354171		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5UTR-3CDS	ENST00000396319	ENST00000589115		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
intron-3CDS	ENST00000494033	ENST00000354171		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
intron-3CDS	ENST00000494033	ENST00000589115		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	TAX1BP1	chr7	27779888	+	GPX4	chr19	1105185	+
5CDS-3UTR	ENST00000379717	ENST00000418066		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000379717	ENST00000409920		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000379717	ENST00000394295		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000379717	ENST00000536030		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000355467	ENST00000418066		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000355467	ENST00000409920		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000355467	ENST00000394295		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000355467	ENST00000536030		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
3UTR-3UTR	ENST00000494548	ENST00000418066		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000494548	ENST00000409920		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000494548	ENST00000394295		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
3UTR-5UTR	ENST00000494548	ENST00000536030		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-3UTR	ENST00000556601	ENST00000418066		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-5UTR	ENST00000556601	ENST00000409920		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-5UTR	ENST00000556601	ENST00000394295		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-5UTR	ENST00000556601	ENST00000536030		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-3UTR	ENST00000416005	ENST00000418066		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000416005	ENST00000409920		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000416005	ENST00000394295		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5CDS-5UTR	ENST00000416005	ENST00000536030		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-3UTR	ENST00000413371	ENST00000418066		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-5UTR	ENST00000413371	ENST00000409920		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-5UTR	ENST00000413371	ENST00000394295		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-5UTR	ENST00000413371	ENST00000536030		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	ZNF512	chr2	27806009	+	ANXA4	chr2	70008652	+
5UTR-3CDS	ENST00000318683	ENST00000317306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	B3GNT3	chr19	17906015	+	INSL3	chr19	17927868	-
5UTR-3CDS	ENST00000318683	ENST00000379695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	B3GNT3	chr19	17906015	+	INSL3	chr19	17927868	-
5UTR-3CDS	ENST00000595387	ENST00000317306		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	B3GNT3	chr19	17906015	+	INSL3	chr19	17927868	-
5UTR-3CDS	ENST00000595387	ENST00000379695		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	B3GNT3	chr19	17906015	+	INSL3	chr19	17927868	-
5CDS-intron	ENST00000316448	ENST00000587758		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000588426		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000356783		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000291901		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000536926		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000588981		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000587465		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000585321		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-intron	ENST00000316448	ENST00000592920		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CALR	chr19	13055304	+	TNNT1	chr19	55646910	-
5CDS-3UTR	ENST00000377093	ENST00000464117		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377093	ENST00000362011		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000263934	ENST00000464117		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000263934	ENST00000362011		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377086	ENST00000464117		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377086	ENST00000362011		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377083	ENST00000464117		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377083	ENST00000362011		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377081	ENST00000464117		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000377081	ENST00000362011		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
intron-3UTR	ENST00000465635	ENST00000464117		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
intron-3UTR	ENST00000465635	ENST00000362011		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	KIF1B	chr1	10292492	+	SHISA4	chr1	201858573	+
Frame-shit	ENST00000425019	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000425019	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000425019	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000324219	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000324219	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000324219	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000350198	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000350198	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000350198	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000302217	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000302217	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000302217	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000413150	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000413150	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000413150	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000347699	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000347699	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000347699	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000456652	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000456652	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000456652	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000350878	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
Frame-shit	ENST00000350878	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
5CDS-5UTR	ENST00000350878	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
intron-3CDS	ENST00000498066	ENST00000393445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
intron-3CDS	ENST00000498066	ENST00000258428		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
intron-5UTR	ENST00000498066	ENST00000465835		TCGA	RV	UCEC	TCGA-PG-A914-01A	MAP4K4	chr2	102472600	+	REV1	chr2	100055772	-
In-frame	ENST00000425690	ENST00000334152		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000425690	ENST00000592581		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000425690	ENST00000391958		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000425690	ENST00000589522		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
In-frame	ENST00000344956	ENST00000334152		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000344956	ENST00000592581		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000344956	ENST00000391958		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000344956	ENST00000589522		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
In-frame	ENST00000403059	ENST00000334152		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000403059	ENST00000592581		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000403059	ENST00000391958		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000403059	ENST00000589522		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
In-frame	ENST00000406449	ENST00000334152		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000406449	ENST00000592581		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000406449	ENST00000391958		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
5CDS-5UTR	ENST00000406449	ENST00000589522		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	PVR	chr19	45150842	+	ZNF233	chr19	44768467	+
Frame-shit	ENST00000338854	ENST00000575898		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000338854	ENST00000250076		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000338854	ENST00000416429		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000338854	ENST00000575538		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-3CDS	ENST00000395757	ENST00000575898		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-3CDS	ENST00000395757	ENST00000250076		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-5UTR	ENST00000395757	ENST00000416429		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-5UTR	ENST00000395757	ENST00000575538		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000355815	ENST00000575898		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000355815	ENST00000250076		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000355815	ENST00000416429		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000355815	ENST00000575538		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000261646	ENST00000575898		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000261646	ENST00000250076		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000261646	ENST00000416429		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000261646	ENST00000575538		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000435530	ENST00000575898		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000435530	ENST00000250076		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000435530	ENST00000416429		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
5CDS-5UTR	ENST00000435530	ENST00000575538		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-3CDS	ENST00000583732	ENST00000575898		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-3CDS	ENST00000583732	ENST00000250076		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-5UTR	ENST00000583732	ENST00000416429		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
intron-5UTR	ENST00000583732	ENST00000575538		TCGA	RV	UCEC	TCGA-AJ-A2QM-01A	SREBF1	chr17	17740041	-	ZNF232	chr17	5013163	-
Frame-shit	ENST00000282120	ENST00000254636		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000282120	ENST00000449247		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000282120	ENST00000410111		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000282120	ENST00000442664		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000282120	ENST00000409051		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
5CDS-intron	ENST00000282120	ENST00000490238		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000377386	ENST00000254636		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000377386	ENST00000449247		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000377386	ENST00000410111		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000377386	ENST00000442664		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000377386	ENST00000409051		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
5CDS-intron	ENST00000377386	ENST00000490238		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000398263	ENST00000254636		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000398263	ENST00000449247		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000398263	ENST00000410111		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000398263	ENST00000442664		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000398263	ENST00000409051		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
5CDS-intron	ENST00000398263	ENST00000490238		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409232	ENST00000254636		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409232	ENST00000449247		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409232	ENST00000410111		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409232	ENST00000442664		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409232	ENST00000409051		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
5CDS-intron	ENST00000409232	ENST00000490238		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409015	ENST00000254636		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409015	ENST00000449247		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409015	ENST00000410111		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409015	ENST00000442664		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
Frame-shit	ENST00000409015	ENST00000409051		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
5CDS-intron	ENST00000409015	ENST00000490238		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
intron-3CDS	ENST00000444342	ENST00000254636		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
intron-3CDS	ENST00000444342	ENST00000449247		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
intron-3CDS	ENST00000444342	ENST00000410111		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
intron-3CDS	ENST00000444342	ENST00000442664		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
intron-3CDS	ENST00000444342	ENST00000409051		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
intron-intron	ENST00000444342	ENST00000490238		TCGA	RV	UCEC	TCGA-PG-A7D5-01A	TGOLN2	chr2	85552038	-	IMMT	chr2	86372004	-
5CDS-5UTR	ENST00000406386	ENST00000249014		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TRIOBP	chr22	38097486	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000407319	ENST00000249014		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TRIOBP	chr22	38097486	+	CDC42EP1	chr22	37962079	+
intron-5UTR	ENST00000403663	ENST00000249014		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	TRIOBP	chr22	38097486	+	CDC42EP1	chr22	37962079	+
intron-intron	ENST00000593699	ENST00000539909		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000286621		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000372734		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000541550		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000593699	ENST00000467840		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000539909		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000286621		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000372734		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000541550		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000372499	ENST00000467840		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000539909		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000286621		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000372734		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000541550		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
intron-intron	ENST00000496424	ENST00000467840		TCGA	RV	UCEC	TCGA-5B-A90C-01A	C10orf11	chr10	77198252	+	ADK	chr10	76285014	+
In-frame	ENST00000577830	ENST00000006101		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000577830	ENST00000584666		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
In-frame	ENST00000407144	ENST00000006101		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000407144	ENST00000584666		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
In-frame	ENST00000360238	ENST00000006101		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
5CDS-5UTR	ENST00000360238	ENST00000584666		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
intron-3CDS	ENST00000577840	ENST00000006101		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
intron-5UTR	ENST00000577840	ENST00000584666		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
intron-3CDS	ENST00000578357	ENST00000006101		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
intron-5UTR	ENST00000578357	ENST00000584666		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	CUEDC1	chr17	55962590	-	COPZ2	chr17	46111310	-
In-frame	ENST00000509479	ENST00000552397		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
In-frame	ENST00000509479	ENST00000305879		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
5CDS-5UTR	ENST00000509479	ENST00000552395		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
intron-3CDS	ENST00000327122	ENST00000552397		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
intron-3CDS	ENST00000327122	ENST00000305879		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
intron-5UTR	ENST00000327122	ENST00000552395		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
intron-3CDS	ENST00000398940	ENST00000552397		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
intron-3CDS	ENST00000398940	ENST00000305879		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
intron-5UTR	ENST00000398940	ENST00000552395		TCGA	RV	UCEC	TCGA-AX-A3FW-01A	MAML3	chr4	141074014	-	GTSF1	chr12	54857081	-
In-frame	ENST00000400556	ENST00000360534		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	PPP4R1	chr18	9561978	-	DPP4	chr2	162851882	-
5CDS-5UTR	ENST00000400556	ENST00000491591		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	PPP4R1	chr18	9561978	-	DPP4	chr2	162851882	-
In-frame	ENST00000400555	ENST00000360534		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	PPP4R1	chr18	9561978	-	DPP4	chr2	162851882	-
5CDS-5UTR	ENST00000400555	ENST00000491591		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	PPP4R1	chr18	9561978	-	DPP4	chr2	162851882	-
intron-3CDS	ENST00000580583	ENST00000360534		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	PPP4R1	chr18	9561978	-	DPP4	chr2	162851882	-
intron-5UTR	ENST00000580583	ENST00000491591		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	PPP4R1	chr18	9561978	-	DPP4	chr2	162851882	-
5UTR-3CDS	ENST00000537330	ENST00000359156		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5UTR-3CDS	ENST00000537330	ENST00000541972		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5UTR-3CDS	ENST00000537330	ENST00000396620		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5UTR-3CDS	ENST00000537330	ENST00000432237		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5UTR-intron	ENST00000537330	ENST00000539632		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000570891	ENST00000359156		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000570891	ENST00000541972		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000570891	ENST00000396620		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000570891	ENST00000432237		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5CDS-intron	ENST00000570891	ENST00000539632		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000306801	ENST00000359156		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000306801	ENST00000541972		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000306801	ENST00000396620		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000306801	ENST00000432237		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5CDS-intron	ENST00000306801	ENST00000539632		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000544334	ENST00000359156		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000544334	ENST00000541972		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000544334	ENST00000396620		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000544334	ENST00000432237		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
5CDS-intron	ENST00000544334	ENST00000539632		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
intron-3CDS	ENST00000575542	ENST00000359156		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
intron-3CDS	ENST00000575542	ENST00000541972		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
intron-3CDS	ENST00000575542	ENST00000396620		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
intron-3CDS	ENST00000575542	ENST00000432237		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
intron-intron	ENST00000575542	ENST00000539632		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	RPTOR	chr17	78599593	+	CD163	chr12	7655160	-
Frame-shit	ENST00000399537	ENST00000425013		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000399537	ENST00000389902		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000399537	ENST00000469375		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000430969	ENST00000425013		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000430969	ENST00000389902		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
5CDS-5UTR	ENST00000430969	ENST00000469375		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000399434	ENST00000469375		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5460691	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000375299	ENST00000375312		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000375299	ENST00000360383		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000375299	ENST00000356221		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000375299	ENST00000375310		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000375299	ENST00000375308		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000375299	ENST00000252457		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000375299	ENST00000252458		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
5CDS-intron	ENST00000375299	ENST00000461716		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000375312		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000360383		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000356221		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000375310		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000375308		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000252457		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
Frame-shit	ENST00000351487	ENST00000252458		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
5CDS-intron	ENST00000351487	ENST00000461716		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000375312		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000360383		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000356221		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000375310		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000375308		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000252457		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-3CDS	ENST00000475218	ENST00000252458		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
intron-intron	ENST00000475218	ENST00000461716		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	UPF3A	chr13	115048418	+	CDC16	chr13	115007596	+
5UTR-3UTR	ENST00000335793	ENST00000472729		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000335793	ENST00000311832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000335793	ENST00000538736		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000439510	ENST00000472729		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000439510	ENST00000311832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000439510	ENST00000538736		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000581014	ENST00000472729		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000581014	ENST00000311832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
5UTR-3UTR	ENST00000581014	ENST00000538736		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000582303	ENST00000472729		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000582303	ENST00000311832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
intron-3UTR	ENST00000582303	ENST00000538736		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CDC42EP4	chr17	71308032	-	COMMD1	chr2	62227836	+
Frame-shit	ENST00000530878	ENST00000367942		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
5CDS-intron	ENST00000530878	ENST00000476437		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
Frame-shit	ENST00000361897	ENST00000367942		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
5CDS-intron	ENST00000361897	ENST00000476437		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-3CDS	ENST00000493151	ENST00000367942		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-intron	ENST00000493151	ENST00000476437		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-3CDS	ENST00000454693	ENST00000367942		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
intron-intron	ENST00000454693	ENST00000476437		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	NOS1AP	chr1	162040072	+	ATF6	chr1	161928236	+
In-frame	ENST00000372577	ENST00000358161		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
In-frame	ENST00000372577	ENST00000372739		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
In-frame	ENST00000372577	ENST00000372731		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
5CDS-intron	ENST00000372577	ENST00000475367		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
intron-3CDS	ENST00000550219	ENST00000358161		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
intron-3CDS	ENST00000550219	ENST00000372739		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
intron-3CDS	ENST00000550219	ENST00000372731		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
intron-intron	ENST00000550219	ENST00000475367		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	NUP188	chr9	131752505	+	SPTAN1	chr9	131375660	+
In-frame	ENST00000263681	ENST00000328257		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
In-frame	ENST00000263681	ENST00000398427		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000263681	ENST00000542710		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-intron	ENST00000263681	ENST00000543525		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
In-frame	ENST00000527458	ENST00000328257		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
In-frame	ENST00000527458	ENST00000398427		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000527458	ENST00000542710		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-intron	ENST00000527458	ENST00000543525		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
In-frame	ENST00000532497	ENST00000328257		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
In-frame	ENST00000532497	ENST00000398427		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-3UTR	ENST00000532497	ENST00000542710		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-intron	ENST00000532497	ENST00000543525		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
intron-3CDS	ENST00000532784	ENST00000328257		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
intron-3CDS	ENST00000532784	ENST00000398427		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
intron-3UTR	ENST00000532784	ENST00000542710		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
intron-intron	ENST00000532784	ENST00000543525		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	POLD3	chr11	74324055	+	PPME1	chr11	73914773	+
5CDS-intron	ENST00000335263	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000335263	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000424963	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000322340	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000499851	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000342702	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556807	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000558567	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000299135	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000454394	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
intron-intron	ENST00000556511	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
3UTR-intron	ENST00000557186	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000422945		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000556068		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000554442		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000328724		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000350249		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000445439		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000334743		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000557095		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000556260		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000556946		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5UTR-intron	ENST00000545563	ENST00000557714		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102302506	+
5CDS-intron	ENST00000331925	ENST00000513761		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000347613		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000360642		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000504131		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000331925	ENST00000506924		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000513761		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000347613		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000360642		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000504131		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000573283	ENST00000506924		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000513761		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000347613		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000360642		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000504131		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575842	ENST00000506924		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000513761		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000347613		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000360642		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000504131		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
intron-intron	ENST00000575087	ENST00000506924		TCGA	RV	UCEC	TCGA-EY-A1GO-01A	ACTG1	chr17	79476999	-	CLCN3	chr4	170623929	+
5CDS-5UTR	ENST00000435504	ENST00000275884		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5CDS-5UTR	ENST00000435504	ENST00000537639		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5CDS-5UTR	ENST00000435504	ENST00000496613		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5CDS-5UTR	ENST00000435504	ENST00000492720		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000336112	ENST00000275884		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000336112	ENST00000537639		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000336112	ENST00000496613		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000336112	ENST00000492720		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000272341	ENST00000275884		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000272341	ENST00000537639		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000272341	ENST00000496613		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
5UTR-5UTR	ENST00000272341	ENST00000492720		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000404843	ENST00000275884		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000404843	ENST00000537639		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000404843	ENST00000496613		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000404843	ENST00000492720		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000497092	ENST00000275884		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000497092	ENST00000537639		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000497092	ENST00000496613		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
intron-5UTR	ENST00000497092	ENST00000492720		TCGA	RV	UCEC	TCGA-PG-A915-01A	ASXL2	chr2	26101035	-	DENND2A	chr7	140302342	-
In-frame	ENST00000303305	ENST00000553116		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	PA2G4	chr12	56503719	+	RAB5B	chr12	56385881	+
Frame-shit	ENST00000303305	ENST00000360299		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	PA2G4	chr12	56503719	+	RAB5B	chr12	56385881	+
In-frame	ENST00000303305	ENST00000448789		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	PA2G4	chr12	56503719	+	RAB5B	chr12	56385881	+
In-frame	ENST00000552766	ENST00000553116		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	PA2G4	chr12	56503719	+	RAB5B	chr12	56385881	+
Frame-shit	ENST00000552766	ENST00000360299		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	PA2G4	chr12	56503719	+	RAB5B	chr12	56385881	+
In-frame	ENST00000552766	ENST00000448789		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	PA2G4	chr12	56503719	+	RAB5B	chr12	56385881	+
In-frame	ENST00000404072	ENST00000322217		TCGA	RV	UCEC	TCGA-PG-A914-01A	PICK1	chr22	38455352	+	MYPOP	chr19	46394581	-
3UTR-3CDS	ENST00000468288	ENST00000322217		TCGA	RV	UCEC	TCGA-PG-A914-01A	PICK1	chr22	38455352	+	MYPOP	chr19	46394581	-
In-frame	ENST00000356976	ENST00000322217		TCGA	RV	UCEC	TCGA-PG-A914-01A	PICK1	chr22	38455352	+	MYPOP	chr19	46394581	-
5UTR-3CDS	ENST00000545334	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-intron	ENST00000545334	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-3CDS	ENST00000537927	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-intron	ENST00000537927	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-3CDS	ENST00000318304	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-intron	ENST00000318304	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-3CDS	ENST00000535047	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-intron	ENST00000535047	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-3CDS	ENST00000542629	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-intron	ENST00000542629	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-3CDS	ENST00000228425	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5UTR-intron	ENST00000228425	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
3UTR-3CDS	ENST00000541633	ENST00000285018		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
3UTR-intron	ENST00000541633	ENST00000497808		TCGA	RV	UCEC	TCGA-EO-A3B1-01A	PPFIBP1	chr12	27677298	+	WNT7A	chr3	13860920	-
5CDS-intron	ENST00000228284	ENST00000548052		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
5CDS-5UTR	ENST00000228284	ENST00000551281		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
5CDS-5UTR	ENST00000228284	ENST00000228476		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
5CDS-intron	ENST00000431469	ENST00000548052		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
5CDS-5UTR	ENST00000431469	ENST00000551281		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
5CDS-5UTR	ENST00000431469	ENST00000228476		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-intron	ENST00000552221	ENST00000548052		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-5UTR	ENST00000552221	ENST00000551281		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-5UTR	ENST00000552221	ENST00000228476		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-intron	ENST00000546611	ENST00000548052		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-5UTR	ENST00000546611	ENST00000551281		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-5UTR	ENST00000546611	ENST00000228476		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109278774	+
intron-3CDS	ENST00000443185	ENST00000382582		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000443185	ENST00000355994		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000443185	ENST00000397875		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000443185	ENST00000397866		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000443185	ENST00000397865		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000443185	ENST00000527041		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000443185	ENST00000359645		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000528160		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000397869		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000354542		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000526111		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000580402		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000579129		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000578193		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000397863		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000397860		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000443185	ENST00000487778		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000382582		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000355994		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000397875		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000397866		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000397865		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000527041		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-3CDS	ENST00000524431	ENST00000359645		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000528160		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000397869		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000354542		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000526111		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000580402		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000579129		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000578193		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000397863		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000397860		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
intron-intron	ENST00000524431	ENST00000487778		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	ZNF516	chr18	74202637	-	MBP	chr18	74702016	-
5CDS-intron	ENST00000331925	ENST00000300134		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000538913		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000543873		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000556155		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000537215		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000331925	ENST00000454075		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000300134		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000538913		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000543873		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000556155		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000537215		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000573283	ENST00000454075		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000300134		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000538913		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000543873		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000556155		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000537215		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575842	ENST00000454075		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000300134		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000538913		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000543873		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000556155		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000537215		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
intron-intron	ENST00000575087	ENST00000454075		TCGA	RV	UCEC	TCGA-AJ-A3EK-01A	ACTG1	chr17	79476999	-	STAT6	chr12	57496773	-
Frame-shit	ENST00000346916	ENST00000280326		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000346916	ENST00000503026		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000346916	ENST00000515390		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000346916	ENST00000515676		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000346916	ENST00000506600		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000545507	ENST00000280326		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000545507	ENST00000503026		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000545507	ENST00000515390		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000545507	ENST00000515676		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000545507	ENST00000506600		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000333511	ENST00000280326		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000333511	ENST00000503026		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000333511	ENST00000515390		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000333511	ENST00000515676		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000333511	ENST00000506600		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000353555	ENST00000280326		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000353555	ENST00000503026		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000353555	ENST00000515390		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000353555	ENST00000515676		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000353555	ENST00000506600		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000574970	ENST00000280326		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
intron-intron	ENST00000574970	ENST00000503026		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
intron-intron	ENST00000574970	ENST00000515390		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
intron-intron	ENST00000574970	ENST00000515676		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
intron-intron	ENST00000574970	ENST00000506600		TCGA	RV	UCEC	TCGA-EO-A3B0-01A	BSG	chr19	583492	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000080059	ENST00000335523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	HDAC7	chr12	48213550	-	VSTM2B	chr19	30018118	+
Frame-shit	ENST00000354334	ENST00000335523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	HDAC7	chr12	48213550	-	VSTM2B	chr19	30018118	+
Frame-shit	ENST00000552960	ENST00000335523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	HDAC7	chr12	48213550	-	VSTM2B	chr19	30018118	+
intron-3CDS	ENST00000380610	ENST00000335523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	HDAC7	chr12	48213550	-	VSTM2B	chr19	30018118	+
intron-3CDS	ENST00000427332	ENST00000335523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	HDAC7	chr12	48213550	-	VSTM2B	chr19	30018118	+
intron-3CDS	ENST00000488927	ENST00000335523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	HDAC7	chr12	48213550	-	VSTM2B	chr19	30018118	+
5UTR-3CDS	ENST00000335044	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000335044	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000335044	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000335044	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000335044	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000265529	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000265529	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000265529	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000265529	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000265529	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000444589	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000444589	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000444589	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000444589	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000444589	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000452770	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000452770	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000452770	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000452770	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000452770	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000352910	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000352910	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000352910	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000352910	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000352910	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000487440	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000487440	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000487440	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000487440	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000487440	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000425853	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000425853	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000425853	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-intron	ENST00000425853	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-intron	ENST00000425853	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000432493	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000432493	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000432493	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000432493	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000432493	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000425452	ENST00000345003		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000425452	ENST00000296048		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000425452	ENST00000483267		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-intron	ENST00000425452	ENST00000484197		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
intron-intron	ENST00000425452	ENST00000479119		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	KIF9	chr3	47323985	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000348520	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000348520	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000348520	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000348520	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000348520	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000348520	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000348520	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000348520	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000380038	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000380038	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000389744	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000389744	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557575	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000557575	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000553286	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000553286	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000347839	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000347839	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000555836	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000555836	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000334553	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000334553	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000246489	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000246489	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000557450	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000557450	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000554280	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000554280	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000452929	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000452929	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000440884		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000416682		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000429436		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000303622		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000216288		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000553942		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3CDS	ENST00000445352	ENST00000335102		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
5UTR-3UTR	ENST00000445352	ENST00000561071		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	KLC1	chr14	104095831	+	MARK3	chr14	103969219	+
In-frame	ENST00000267460	ENST00000395309		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000413890		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000438792		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000395314		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000395308		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000395311		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000416613		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
In-frame	ENST00000267460	ENST00000554507		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
5CDS-intron	ENST00000267460	ENST00000555573		TCGA	RV	UCEC	TCGA-AX-A2H4-01A	PELI2	chr14	56585455	+	KTN1	chr14	56122760	+
intron-3CDS	ENST00000398637	ENST00000454366		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	SLC38A1	chr12	46662648	-	GTSE1	chr22	46719087	+
intron-3CDS	ENST00000549049	ENST00000454366		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	SLC38A1	chr12	46662648	-	GTSE1	chr22	46719087	+
intron-3CDS	ENST00000439706	ENST00000454366		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	SLC38A1	chr12	46662648	-	GTSE1	chr22	46719087	+
5UTR-3CDS	ENST00000546893	ENST00000454366		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	SLC38A1	chr12	46662648	-	GTSE1	chr22	46719087	+
5UTR-3CDS	ENST00000549633	ENST00000454366		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	SLC38A1	chr12	46662648	-	GTSE1	chr22	46719087	+
intron-3CDS	ENST00000552197	ENST00000454366		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	SLC38A1	chr12	46662648	-	GTSE1	chr22	46719087	+
5UTR-3CDS	ENST00000327492	ENST00000216254		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	TOB2	chr22	41842383	-	ACO2	chr22	41903795	+
5UTR-3CDS	ENST00000327492	ENST00000396512		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	TOB2	chr22	41842383	-	ACO2	chr22	41903795	+
5UTR-intron	ENST00000327492	ENST00000466237		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	TOB2	chr22	41842383	-	ACO2	chr22	41903795	+
Frame-shit	ENST00000397732	ENST00000262809		TCGA	RV	UCEC	TCGA-PG-A915-01A	ZNF709	chr19	12595469	-	ELL	chr19	18557624	-
Frame-shit	ENST00000397732	ENST00000596124		TCGA	RV	UCEC	TCGA-PG-A915-01A	ZNF709	chr19	12595469	-	ELL	chr19	18557624	-
intron-3CDS	ENST00000428311	ENST00000262809		TCGA	RV	UCEC	TCGA-PG-A915-01A	ZNF709	chr19	12595469	-	ELL	chr19	18557624	-
intron-3CDS	ENST00000428311	ENST00000596124		TCGA	RV	UCEC	TCGA-PG-A915-01A	ZNF709	chr19	12595469	-	ELL	chr19	18557624	-
intron-3CDS	ENST00000493776	ENST00000262809		TCGA	RV	UCEC	TCGA-PG-A915-01A	ZNF709	chr19	12595469	-	ELL	chr19	18557624	-
intron-3CDS	ENST00000493776	ENST00000596124		TCGA	RV	UCEC	TCGA-PG-A915-01A	ZNF709	chr19	12595469	-	ELL	chr19	18557624	-
Frame-shit	ENST00000373504	ENST00000373514		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	CHIC1	chrX	72804408	+	CDX4	chrX	72673353	+
Frame-shit	ENST00000373502	ENST00000373514		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	CHIC1	chrX	72804408	+	CDX4	chrX	72673353	+
5UTR-5UTR	ENST00000473039	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000473039	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000473039	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373624	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373624	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373624	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000542603	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000542603	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000542603	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000394219	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000394219	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000394219	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373620	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373620	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373620	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000394215	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000394215	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
intron-5UTR	ENST00000394215	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373618	ENST00000498485		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373618	ENST00000259457		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373618	ENST00000536392		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	DENND1A	chr9	126554866	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000599117	ENST00000478117		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000599117	ENST00000270747		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000432763	ENST00000478117		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000432763	ENST00000270747		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000402194	ENST00000478117		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000402194	ENST00000270747		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000359191	ENST00000478117		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000359191	ENST00000270747		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000598725	ENST00000478117		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000598725	ENST00000270747		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	SUPT5H	chr19	39965358	+	ARHGEF19	chr1	16525749	-
5CDS-5UTR	ENST00000293218	ENST00000578229		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000580454		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000579760		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000339142		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-intron	ENST00000293218	ENST00000311661		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-intron	ENST00000293218	ENST00000354124		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000392445		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000581774		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000583904		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000293218	ENST00000580474		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-intron	ENST00000293218	ENST00000582625		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000578229		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000580454		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000579760		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000339142		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-intron	ENST00000589666	ENST00000311661		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-intron	ENST00000589666	ENST00000354124		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000392445		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000581774		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000583904		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-5UTR	ENST00000589666	ENST00000580474		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5CDS-intron	ENST00000589666	ENST00000582625		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	UNK	chr17	73781065	+	C1QTNF1	chr17	77040037	+
5UTR-5UTR	ENST00000383202	ENST00000064778		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000383202	ENST00000450446		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000383202	ENST00000356467		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000236698	ENST00000064778		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000236698	ENST00000450446		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000236698	ENST00000356467		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000434713	ENST00000064778		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000434713	ENST00000450446		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000434713	ENST00000356467		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000480733	ENST00000064778		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000480733	ENST00000450446		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
5UTR-5UTR	ENST00000480733	ENST00000356467		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000536929	ENST00000064778		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000536929	ENST00000450446		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
intron-5UTR	ENST00000536929	ENST00000356467		TCGA	RV	UCEC	TCGA-BG-A3PP-01A	STAG1	chr3	136471037	-	FAM168A	chr11	73179537	-
Frame-shit	ENST00000296490	ENST00000253251		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR82	chr3	52304728	-	UBE4B	chr1	10132086	+
5CDS-5UTR	ENST00000296490	ENST00000377157		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR82	chr3	52304728	-	UBE4B	chr1	10132086	+
5CDS-5UTR	ENST00000296490	ENST00000343090		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR82	chr3	52304728	-	UBE4B	chr1	10132086	+
5CDS-5UTR	ENST00000296490	ENST00000377153		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR82	chr3	52304728	-	UBE4B	chr1	10132086	+
5CDS-intron	ENST00000296490	ENST00000475795		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	WDR82	chr3	52304728	-	UBE4B	chr1	10132086	+
5UTR-3CDS	ENST00000261716	ENST00000225719		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	TAOK1	chr17	27718042	+	CPD	chr17	28747859	+
5UTR-3CDS	ENST00000261716	ENST00000543464		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	TAOK1	chr17	27718042	+	CPD	chr17	28747859	+
5UTR-intron	ENST00000261716	ENST00000584051		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	TAOK1	chr17	27718042	+	CPD	chr17	28747859	+
5UTR-3CDS	ENST00000536202	ENST00000225719		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	TAOK1	chr17	27718042	+	CPD	chr17	28747859	+
5UTR-3CDS	ENST00000536202	ENST00000543464		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	TAOK1	chr17	27718042	+	CPD	chr17	28747859	+
5UTR-intron	ENST00000536202	ENST00000584051		TCGA	RV	UCEC	TCGA-EY-A2OQ-01A	TAOK1	chr17	27718042	+	CPD	chr17	28747859	+
5CDS-intron	ENST00000398571	ENST00000159111		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
5CDS-intron	ENST00000398571	ENST00000381759		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
5CDS-intron	ENST00000398571	ENST00000536461		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
5CDS-intron	ENST00000398571	ENST00000592175		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
intron-intron	ENST00000472689	ENST00000159111		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
intron-intron	ENST00000472689	ENST00000381759		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
intron-intron	ENST00000472689	ENST00000536461		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
intron-intron	ENST00000472689	ENST00000592175		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	USP34	chr2	61697785	-	KDM4B	chr19	5119129	+
intron-5UTR	ENST00000598155	ENST00000593685		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000598155	ENST00000323039		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000598155	ENST00000348817		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
intron-intron	ENST00000598155	ENST00000597639		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000598155	ENST00000430012		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
intron-5UTR	ENST00000598155	ENST00000601972		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000245934	ENST00000593685		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000245934	ENST00000323039		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000245934	ENST00000348817		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-intron	ENST00000245934	ENST00000597639		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000245934	ENST00000430012		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-5UTR	ENST00000245934	ENST00000601972		TCGA	RV	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	DYRK1B	chr19	40322608	-
5UTR-3CDS	ENST00000380996	ENST00000311604		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-3CDS	ENST00000380996	ENST00000381775		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-5UTR	ENST00000380996	ENST00000405957		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-5UTR	ENST00000380996	ENST00000406638		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-intron	ENST00000380996	ENST00000485341		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-intron	ENST00000380996	ENST00000599825		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-3CDS	ENST00000333256	ENST00000311604		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-3CDS	ENST00000333256	ENST00000381775		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-5UTR	ENST00000333256	ENST00000405957		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-5UTR	ENST00000333256	ENST00000406638		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-intron	ENST00000333256	ENST00000485341		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-intron	ENST00000333256	ENST00000599825		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-3CDS	ENST00000380992	ENST00000311604		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-3CDS	ENST00000380992	ENST00000381775		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-5UTR	ENST00000380992	ENST00000405957		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-5UTR	ENST00000380992	ENST00000406638		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-intron	ENST00000380992	ENST00000485341		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
5UTR-intron	ENST00000380992	ENST00000599825		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000451491	ENST00000311604		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000451491	ENST00000381775		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000451491	ENST00000405957		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000451491	ENST00000406638		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-intron	ENST00000451491	ENST00000485341		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-intron	ENST00000451491	ENST00000599825		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000467308	ENST00000311604		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000467308	ENST00000381775		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000467308	ENST00000405957		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000467308	ENST00000406638		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-intron	ENST00000467308	ENST00000485341		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
intron-intron	ENST00000467308	ENST00000599825		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	TSSC4	chr11	2422028	+	LSP1	chr11	1901317	+
In-frame	ENST00000583610	ENST00000360317		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000583610	ENST00000394175		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000583610	ENST00000309481		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000583610	ENST00000520542		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000583610	ENST00000418519		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000583610	ENST00000394179		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
Frame-shit	ENST00000394294	ENST00000360317		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000394294	ENST00000394175		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000394294	ENST00000309481		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000394294	ENST00000520542		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000394294	ENST00000418519		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000394294	ENST00000394179		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
Frame-shit	ENST00000264658	ENST00000360317		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000264658	ENST00000394175		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000264658	ENST00000309481		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000264658	ENST00000520542		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000264658	ENST00000418519		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000264658	ENST00000394179		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
Frame-shit	ENST00000577399	ENST00000360317		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000577399	ENST00000394175		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000577399	ENST00000309481		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000577399	ENST00000520542		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000577399	ENST00000418519		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
5CDS-5UTR	ENST00000577399	ENST00000394179		TCGA	RV	UCEC	TCGA-B5-A5OE-01A	FBXL20	chr17	37499433	-	GSDMB	chr17	38073574	-
Frame-shit	ENST00000541509	ENST00000396392		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
Frame-shit	ENST00000541509	ENST00000396396		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
5CDS-intron	ENST00000541509	ENST00000604870		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
Frame-shit	ENST00000265382	ENST00000396392		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
Frame-shit	ENST00000265382	ENST00000396396		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
5CDS-intron	ENST00000265382	ENST00000604870		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
intron-3CDS	ENST00000474356	ENST00000396392		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
intron-3CDS	ENST00000474356	ENST00000396396		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
intron-intron	ENST00000474356	ENST00000604870		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	PIP5K1B	chr9	71437599	+	PGM5	chr9	71080009	+
In-frame	ENST00000536252	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
In-frame	ENST00000545103	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
In-frame	ENST00000540348	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
intron-3CDS	ENST00000543944	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
In-frame	ENST00000297661	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
In-frame	ENST00000379186	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
In-frame	ENST00000359544	ENST00000263228		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	UBAP1	chr9	34234338	+	UBE2R2	chr9	33886879	+
5CDS-intron	ENST00000377795	ENST00000267101		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000377795	ENST00000450146		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000377795	ENST00000415288		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000377795	ENST00000553131		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000377795	ENST00000411731		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000377795	ENST00000549832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000353334	ENST00000267101		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000353334	ENST00000450146		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000353334	ENST00000415288		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000353334	ENST00000553131		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000353334	ENST00000411731		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000353334	ENST00000549832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000524315	ENST00000267101		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000524315	ENST00000450146		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000524315	ENST00000415288		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000524315	ENST00000553131		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000524315	ENST00000411731		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000524315	ENST00000549832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000009530	ENST00000267101		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000009530	ENST00000450146		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000009530	ENST00000415288		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000009530	ENST00000553131		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000009530	ENST00000411731		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000009530	ENST00000549832		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	CD74	chr5	149781200	-	ERBB3	chr12	56492035	+
5UTR-3CDS	ENST00000328631	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000328631	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000328631	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000340879	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000340879	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000340879	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000432678	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000432678	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000432678	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000431721	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000431721	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000431721	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000449610	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000449610	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000449610	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000413298	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000413298	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000413298	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-3CDS	ENST00000450045	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-3CDS	ENST00000450045	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-intron	ENST00000450045	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000446860	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000446860	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000446860	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000417896	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000417896	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000417896	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000443964	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000443964	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000443964	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000436134	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-3CDS	ENST00000436134	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
5UTR-intron	ENST00000436134	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-3CDS	ENST00000453202	ENST00000265563		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-3CDS	ENST00000453202	ENST00000454963		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-intron	ENST00000453202	ENST00000296446		TCGA	RV	UCEC	TCGA-PG-A914-01A	IP6K2	chr3	48754590	-	PRKAR2A	chr3	48793877	-
intron-5UTR	ENST00000492698	ENST00000372676		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000492698	ENST00000217425		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000492698	ENST00000339946		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-intron	ENST00000492698	ENST00000488143		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-intron	ENST00000492698	ENST00000342873		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
5CDS-5UTR	ENST00000252999	ENST00000372676		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
5CDS-5UTR	ENST00000252999	ENST00000217425		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
5CDS-5UTR	ENST00000252999	ENST00000339946		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
5CDS-intron	ENST00000252999	ENST00000488143		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
5CDS-intron	ENST00000252999	ENST00000342873		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000370692	ENST00000372676		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000370692	ENST00000217425		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000370692	ENST00000339946		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-intron	ENST00000370692	ENST00000488143		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-intron	ENST00000370692	ENST00000342873		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000370677	ENST00000372676		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000370677	ENST00000217425		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-5UTR	ENST00000370677	ENST00000339946		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-intron	ENST00000370677	ENST00000488143		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
intron-intron	ENST00000370677	ENST00000342873		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	LAMA5	chr20	60885044	-	WFDC2	chr20	44098396	+
In-frame	ENST00000534328	ENST00000373382		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000534328	ENST00000263559		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000534328	ENST00000395098		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000534328	ENST00000546041		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-3UTR	ENST00000534328	ENST00000490696		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-5UTR	ENST00000534328	ENST00000541711		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-5UTR	ENST00000534328	ENST00000489794		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000332231	ENST00000373382		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000332231	ENST00000263559		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000332231	ENST00000395098		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000332231	ENST00000546041		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-3UTR	ENST00000332231	ENST00000490696		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-5UTR	ENST00000332231	ENST00000541711		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-5UTR	ENST00000332231	ENST00000489794		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000448903	ENST00000373382		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000448903	ENST00000263559		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000448903	ENST00000395098		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000448903	ENST00000546041		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-3UTR	ENST00000448903	ENST00000490696		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-5UTR	ENST00000448903	ENST00000541711		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
5CDS-5UTR	ENST00000448903	ENST00000489794		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-3CDS	ENST00000525891	ENST00000373382		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-3CDS	ENST00000525891	ENST00000263559		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-3CDS	ENST00000525891	ENST00000395098		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-3CDS	ENST00000525891	ENST00000546041		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-3UTR	ENST00000525891	ENST00000490696		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-5UTR	ENST00000525891	ENST00000541711		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
intron-5UTR	ENST00000525891	ENST00000489794		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70916763	+
In-frame	ENST00000293872	ENST00000373302		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
In-frame	ENST00000293872	ENST00000373299		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
5CDS-intron	ENST00000293872	ENST00000481942		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
In-frame	ENST00000337351	ENST00000373302		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
In-frame	ENST00000337351	ENST00000373299		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
5CDS-intron	ENST00000337351	ENST00000481942		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
In-frame	ENST00000397783	ENST00000373302		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
In-frame	ENST00000397783	ENST00000373299		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
5CDS-intron	ENST00000397783	ENST00000481942		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
Frame-shit	ENST00000397780	ENST00000373302		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
Frame-shit	ENST00000397780	ENST00000373299		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
5CDS-intron	ENST00000397780	ENST00000481942		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
intron-3CDS	ENST00000494366	ENST00000373302		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
intron-3CDS	ENST00000494366	ENST00000373299		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
intron-intron	ENST00000494366	ENST00000481942		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LUC7L	chr16	256003	-	STXBP1	chr9	130425484	+
5CDS-intron	ENST00000215832	ENST00000420436		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-5UTR	ENST00000215832	ENST00000334029		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-5UTR	ENST00000215832	ENST00000357068		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-intron	ENST00000398822	ENST00000420436		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-5UTR	ENST00000398822	ENST00000334029		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-5UTR	ENST00000398822	ENST00000357068		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-intron	ENST00000544786	ENST00000420436		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-5UTR	ENST00000544786	ENST00000334029		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
5CDS-5UTR	ENST00000544786	ENST00000357068		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
intron-intron	ENST00000491588	ENST00000420436		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
intron-5UTR	ENST00000491588	ENST00000334029		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
intron-5UTR	ENST00000491588	ENST00000357068		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	MAPK1	chr22	22221612	-	PRODH	chr22	18918711	-
Frame-shit	ENST00000397752	ENST00000341049		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000393470		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000405348		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000393468		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000397752	ENST00000393467		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000341049		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000393470		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000405348		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000393468		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000318493	ENST00000393467		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000341049		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000393470		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000405348		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000393468		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
Frame-shit	ENST00000436117	ENST00000393467		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
3UTR-3CDS	ENST00000495962	ENST00000341049		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
3UTR-3CDS	ENST00000495962	ENST00000393470		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
3UTR-3CDS	ENST00000495962	ENST00000405348		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
3UTR-3CDS	ENST00000495962	ENST00000393468		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
3UTR-3CDS	ENST00000495962	ENST00000393467		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000341049		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393470		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000405348		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393468		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
intron-3CDS	ENST00000539704	ENST00000393467		TCGA	RV	UCEC	TCGA-B5-A0JN-01A	MET	chr7	116381079	+	CAV1	chr7	116199000	+
5UTR-3CDS	ENST00000340513	ENST00000398174		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000340513	ENST00000340852		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000340513	ENST00000335574		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000340513	ENST00000376127		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3UTR	ENST00000340513	ENST00000492709		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000300403	ENST00000398174		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000300403	ENST00000340852		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000300403	ENST00000335574		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000300403	ENST00000376127		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
5UTR-3UTR	ENST00000300403	ENST00000492709		TCGA	RV	UCEC	TCGA-B5-A3FH-01A	TPX2	chr20	30330450	+	HM13	chr20	30154013	+
Frame-shit	ENST00000354828	ENST00000400532		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000354828	ENST00000480456		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000354828	ENST00000312957		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000354828	ENST00000425221		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
5CDS-intron	ENST00000354828	ENST00000477351		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000400075	ENST00000400532		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000400075	ENST00000480456		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000400075	ENST00000312957		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
Frame-shit	ENST00000400075	ENST00000425221		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
5CDS-intron	ENST00000400075	ENST00000477351		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
intron-3CDS	ENST00000487266	ENST00000400532		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
intron-3CDS	ENST00000487266	ENST00000480456		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
intron-3CDS	ENST00000487266	ENST00000312957		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
intron-3CDS	ENST00000487266	ENST00000425221		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
intron-intron	ENST00000487266	ENST00000477351		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	GABPA	chr21	27113986	+	JAM2	chr21	27078291	+
5CDS-intron	ENST00000355481	ENST00000585441		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000355481	ENST00000590503		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000355481	ENST00000589413		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000355481	ENST00000352998		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000360985	ENST00000585441		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000360985	ENST00000590503		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000360985	ENST00000589413		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000360985	ENST00000352998		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000359596	ENST00000585441		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000359596	ENST00000590503		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000359596	ENST00000589413		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
5CDS-intron	ENST00000359596	ENST00000352998		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	RYR1	chr19	39068844	+	ZNF383	chr19	37733371	+
In-frame	ENST00000318003	ENST00000586783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000318003	ENST00000454313		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000318003	ENST00000346736		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000318003	ENST00000591586		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000589606	ENST00000586783		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000589606	ENST00000454313		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000589606	ENST00000346736		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
In-frame	ENST00000589606	ENST00000591586		TCGA	RV	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14017314	+	C19orf57	chr19	13996868	-
5UTR-3CDS	ENST00000317683	ENST00000261783		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	FBXO46	chr19	46234107	-	ARG2	chr14	68108903	+
5UTR-3UTR	ENST00000317683	ENST00000556491		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	FBXO46	chr19	46234107	-	ARG2	chr14	68108903	+
In-frame	ENST00000377069	ENST00000267205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000377069	ENST00000537265		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000377069	ENST00000537171		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000377069	ENST00000545544		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5UTR-3CDS	ENST00000542973	ENST00000267205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5UTR-5UTR	ENST00000542973	ENST00000537265		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5UTR-5UTR	ENST00000542973	ENST00000537171		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5UTR-5UTR	ENST00000542973	ENST00000545544		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
In-frame	ENST00000377071	ENST00000267205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000377071	ENST00000537265		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000377071	ENST00000537171		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000377071	ENST00000545544		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
Frame-shit	ENST00000536437	ENST00000267205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000536437	ENST00000537265		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000536437	ENST00000537171		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000536437	ENST00000545544		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-3CDS	ENST00000538046	ENST00000267205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-5UTR	ENST00000538046	ENST00000537265		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-5UTR	ENST00000538046	ENST00000537171		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-5UTR	ENST00000538046	ENST00000545544		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-3CDS	ENST00000543852	ENST00000267205		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-5UTR	ENST00000543852	ENST00000537265		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-5UTR	ENST00000543852	ENST00000537171		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
intron-5UTR	ENST00000543852	ENST00000545544		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	KDM2B	chr12	121932382	-	RHOF	chr12	122231145	-
5CDS-5UTR	ENST00000280333	ENST00000300875		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	DOCK1	chr10	128860040	+	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000280333	ENST00000391916		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	DOCK1	chr10	128860040	+	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000280333	ENST00000410105		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	DOCK1	chr10	128860040	+	DACT3	chr19	47156332	-
intron-5UTR	ENST00000484400	ENST00000300875		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	DOCK1	chr10	128860040	+	DACT3	chr19	47156332	-
intron-5UTR	ENST00000484400	ENST00000391916		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	DOCK1	chr10	128860040	+	DACT3	chr19	47156332	-
intron-5UTR	ENST00000484400	ENST00000410105		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	DOCK1	chr10	128860040	+	DACT3	chr19	47156332	-
5CDS-5UTR	ENST00000285039	ENST00000520468		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000297564		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000520271		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000517682		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000524245		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000522940		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000518171		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-5UTR	ENST00000285039	ENST00000523016		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000520468		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000297564		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000520271		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000517682		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000524245		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000522940		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000518171		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000324581	ENST00000523016		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000520468		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000297564		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000520271		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000517682		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000524245		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000522940		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000518171		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000592688	ENST00000523016		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000520468		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000297564		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000520271		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000517682		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000524245		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000522940		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000518171		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
intron-5UTR	ENST00000587895	ENST00000523016		TCGA	RV	UCEC	TCGA-DI-A2QY-01A	MYO5B	chr18	47500720	-	COX6C	chr8	100904280	-
5CDS-intron	ENST00000466387	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000466387	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000466387	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-intron	ENST00000496558	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000496558	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000496558	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-intron	ENST00000361291	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000361291	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000361291	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-intron	ENST00000402739	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000402739	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000402739	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-intron	ENST00000540488	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000540488	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000540488	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-intron	ENST00000541047	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000541047	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000541047	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
intron-intron	ENST00000343114	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
intron-5UTR	ENST00000343114	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
intron-5UTR	ENST00000343114	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
intron-intron	ENST00000496251	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
intron-5UTR	ENST00000496251	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
intron-5UTR	ENST00000496251	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-intron	ENST00000409266	ENST00000393897		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000409266	ENST00000272324		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
5CDS-5UTR	ENST00000409266	ENST00000409471		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	CTNNA2	chr2	79878784	+	REG3G	chr2	79253109	+
Frame-shit	ENST00000357429	ENST00000402746		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000357429	ENST00000399654		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000357429	ENST00000406869		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000357429	ENST00000265854		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5CDS-intron	ENST00000357429	ENST00000486340		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397100	ENST00000402746		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397100	ENST00000399654		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397100	ENST00000406869		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397100	ENST00000265854		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5CDS-intron	ENST00000397100	ENST00000486340		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397098	ENST00000402746		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397098	ENST00000399654		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397098	ENST00000406869		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
Frame-shit	ENST00000397098	ENST00000265854		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5CDS-intron	ENST00000397098	ENST00000486340		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5UTR-3CDS	ENST00000488073	ENST00000402746		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5UTR-3CDS	ENST00000488073	ENST00000399654		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5UTR-3CDS	ENST00000488073	ENST00000406869		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5UTR-3CDS	ENST00000488073	ENST00000265854		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
5UTR-intron	ENST00000488073	ENST00000486340		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	2041756	-
In-frame	ENST00000194900	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000194900	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374360	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000374355	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
In-frame	ENST00000542398	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000287272		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000453357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000404895		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000420357		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000416672		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
intron-3CDS	ENST00000461646	ENST00000449677		TCGA	RV	UCEC	TCGA-BK-A139-01A	DLG3	chrX	69699114	+	UNC5D	chr8	35606045	+
Frame-shit	ENST00000440973	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000440973	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
Frame-shit	ENST00000338799	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000338799	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-3CDS	ENST00000456483	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000456483	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
Frame-shit	ENST00000443427	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000443427	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
Frame-shit	ENST00000206249	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000206249	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-3CDS	ENST00000406599	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
intron-intron	ENST00000406599	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
Frame-shit	ENST00000427531	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000427531	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-3CDS	ENST00000482101	ENST00000367255		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000356820		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000423061		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000448038		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000341594		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000265368		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000367253		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000367248		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000413186		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000466159		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000539504		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000347037		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000354674		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
3UTR-intron	ENST00000482101	ENST00000495090		TCGA	RV	UCEC	TCGA-BK-A139-01A	ESR1	chr6	152265643	+	SYNE1	chr6	152694354	-
5CDS-intron	ENST00000453228	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000453228	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000453228	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000453228	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000453228	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000453228	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000453228	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000354410	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000354410	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000354410	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000354410	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000354410	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000354410	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000354410	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-intron	ENST00000558856	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-intron	ENST00000558856	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-intron	ENST00000558856	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-3UTR	ENST00000558856	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-3UTR	ENST00000558856	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-intron	ENST00000558856	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
intron-intron	ENST00000558856	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000558812	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000558812	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000558812	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000558812	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000558812	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000558812	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000558812	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000338042	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000338042	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000338042	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000338042	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000338042	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000338042	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000338042	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557785	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557785	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557785	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000557785	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000557785	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557785	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557785	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000449277	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000449277	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000449277	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000449277	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000449277	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000449277	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000449277	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557942	ENST00000558879		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557942	ENST00000301981		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557942	ENST00000422500		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000557942	ENST00000442993		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-3UTR	ENST00000557942	ENST00000447360		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557942	ENST00000331450		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
5CDS-intron	ENST00000557942	ENST00000559399		TCGA	RV	UCEC	TCGA-PG-A5BC-01A	MEF2A	chr15	100215663	+	LRRC28	chr15	99892574	+
In-frame	ENST00000283426	ENST00000298048		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000538311		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000536987		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000536860		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000545008		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000536329		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000541717		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
In-frame	ENST00000283426	ENST00000543751		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
5CDS-intron	ENST00000283426	ENST00000487398		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	PLEKHG4B	chr5	151714	+	MELK	chr9	36674831	+
5CDS-intron	ENST00000316519	ENST00000489399		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000316519	ENST00000309988		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000316519	ENST00000349807		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000316519	ENST00000354078		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000316519	ENST00000353004		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000261686	ENST00000489399		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000261686	ENST00000309988		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000261686	ENST00000349807		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000261686	ENST00000354078		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
5CDS-intron	ENST00000261686	ENST00000353004		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000316543	ENST00000489399		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000316543	ENST00000309988		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000316543	ENST00000349807		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000316543	ENST00000354078		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000316543	ENST00000353004		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000545511	ENST00000489399		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000545511	ENST00000309988		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000545511	ENST00000349807		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000545511	ENST00000354078		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000545511	ENST00000353004		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000543665	ENST00000489399		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000543665	ENST00000309988		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000543665	ENST00000349807		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000543665	ENST00000354078		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000543665	ENST00000353004		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000398953	ENST00000489399		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000398953	ENST00000309988		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000398953	ENST00000349807		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000398953	ENST00000354078		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
intron-intron	ENST00000398953	ENST00000353004		TCGA	RV	UCEC	TCGA-AX-A1C7-01A	AACS	chr12	125561157	+	MAL	chr2	95713704	+
Frame-shit	ENST00000424085	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000424085	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
Frame-shit	ENST00000257075	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000257075	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000373747	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373747	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373747	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373747	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000426105	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000426105	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000426105	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000426105	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000440538	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000440538	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000440538	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000440538	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000373741	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373741	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373741	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000373741	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000423018	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000423018	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000423018	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000423018	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000373742	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
5CDS-intron	ENST00000373742	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-3CDS	ENST00000490546	ENST00000373736		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000263693		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000528449		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
intron-intron	ENST00000490546	ENST00000398657		TCGA	RV	UCEC	TCGA-FI-A3PX-01A	PUM1	chr1	31422980	-	NKAIN1	chr1	31661034	-
In-frame	ENST00000376020	ENST00000263620		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
5CDS-intron	ENST00000376020	ENST00000592216		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
In-frame	ENST00000289292	ENST00000263620		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
5CDS-intron	ENST00000289292	ENST00000592216		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
intron-3CDS	ENST00000483955	ENST00000263620		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
intron-intron	ENST00000483955	ENST00000592216		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
intron-3CDS	ENST00000460112	ENST00000263620		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
intron-intron	ENST00000460112	ENST00000592216		TCGA	RV	UCEC	TCGA-BK-A0CC-01A	SHROOM4	chrX	50556902	-	ARID3A	chr19	960092	+
Frame-shit	ENST00000343846	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000343846	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5CDS-3UTR	ENST00000343846	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000366878	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000366878	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5CDS-3UTR	ENST00000366878	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000484758	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000484758	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5CDS-3UTR	ENST00000484758	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000494793	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000494793	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5CDS-3UTR	ENST00000494793	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5UTR-3CDS	ENST00000478605	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5UTR-3CDS	ENST00000478605	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5UTR-3UTR	ENST00000478605	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5UTR-3CDS	ENST00000454695	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5UTR-3CDS	ENST00000454695	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5UTR-3UTR	ENST00000454695	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000344029	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000344029	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5CDS-3UTR	ENST00000344029	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000366877	ENST00000323699		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000366877	ENST00000391877		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
5CDS-3UTR	ENST00000366877	ENST00000465848		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SUSD4	chr1	223536620	-	DEGS1	chr1	224377279	+
Frame-shit	ENST00000436648	ENST00000474471		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000436648	ENST00000472572		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000436648	ENST00000315997		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000436648	ENST00000350219		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000436648	ENST00000422873		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000321919	ENST00000474471		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000321919	ENST00000472572		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000321919	ENST00000315997		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000321919	ENST00000350219		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000321919	ENST00000422873		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000381983	ENST00000474471		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000381983	ENST00000472572		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000381983	ENST00000315997		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000381983	ENST00000350219		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000381983	ENST00000422873		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000591451	ENST00000474471		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000591451	ENST00000472572		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000591451	ENST00000315997		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000591451	ENST00000350219		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
Frame-shit	ENST00000591451	ENST00000422873		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
intron-3CDS	ENST00000586901	ENST00000474471		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
intron-3CDS	ENST00000586901	ENST00000472572		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
intron-3CDS	ENST00000586901	ENST00000315997		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
intron-3CDS	ENST00000586901	ENST00000350219		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
intron-3CDS	ENST00000586901	ENST00000422873		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	GLYR1	chr16	4861171	-	C16orf89	chr16	5097965	-
In-frame	ENST00000398645	ENST00000308831		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000398645	ENST00000533360		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000398645	ENST00000532559		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000529006	ENST00000308831		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
In-frame	ENST00000529006	ENST00000533360		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
5CDS-intron	ENST00000529006	ENST00000532559		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000526258	ENST00000308831		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000526258	ENST00000533360		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000526258	ENST00000532559		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000308783	ENST00000308831		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000308783	ENST00000533360		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000308783	ENST00000532559		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530342	ENST00000308831		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000530342	ENST00000533360		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-intron	ENST00000530342	ENST00000532559		TCGA	RV	UCEC	TCGA-AP-A5FX-01A	KDM2A	chr11	66888829	+	RHOD	chr11	66833367	+
intron-3CDS	ENST00000264674	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000264674	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000392736	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000392736	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000464456	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000464456	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000472280	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000472280	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
Frame-shit	ENST00000494292	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5CDS-intron	ENST00000494292	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000468789	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000468789	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000460814	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000460814	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-3CDS	ENST00000433243	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
intron-intron	ENST00000433243	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5UTR-3CDS	ENST00000485957	ENST00000231706		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5UTR-intron	ENST00000485957	ENST00000466168		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	SLC7A14	chr3	170219134	-
5UTR-3UTR	ENST00000334512	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
5UTR-3UTR	ENST00000334512	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
5UTR-intron	ENST00000334512	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000478357	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000478357	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
intron-intron	ENST00000478357	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000446377	ENST00000593699		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
intron-3UTR	ENST00000446377	ENST00000372499		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
intron-intron	ENST00000446377	ENST00000496424		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ZMIZ1	chr10	80878781	+	C10orf11	chr10	77795766	+
Frame-shit	ENST00000265846	ENST00000344111		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	ADAP1	chr7	959605	-	COX19	chr7	1009092	-
Frame-shit	ENST00000449296	ENST00000344111		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	ADAP1	chr7	959605	-	COX19	chr7	1009092	-
Frame-shit	ENST00000539900	ENST00000344111		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	ADAP1	chr7	959605	-	COX19	chr7	1009092	-
5UTR-3CDS	ENST00000463358	ENST00000344111		TCGA	RV	UCEC	TCGA-AJ-A23N-01A	ADAP1	chr7	959605	-	COX19	chr7	1009092	-
intron-3CDS	ENST00000405201	ENST00000339570		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000405201	ENST00000415380		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000405201	ENST00000261693		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000405201	ENST00000376788		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000405201	ENST00000546215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000405201	ENST00000535005		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000405201	ENST00000541205		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000405201	ENST00000540495		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000405201	ENST00000544327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404621	ENST00000339570		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404621	ENST00000415380		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404621	ENST00000261693		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404621	ENST00000376788		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404621	ENST00000546215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404621	ENST00000535005		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404621	ENST00000541205		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404621	ENST00000540495		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404621	ENST00000544327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404121	ENST00000339570		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404121	ENST00000415380		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404121	ENST00000261693		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404121	ENST00000376788		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000404121	ENST00000546215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404121	ENST00000535005		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404121	ENST00000541205		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404121	ENST00000540495		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000404121	ENST00000544327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000356219	ENST00000339570		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000356219	ENST00000415380		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000356219	ENST00000261693		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000356219	ENST00000376788		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000356219	ENST00000546215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000356219	ENST00000535005		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000356219	ENST00000541205		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000356219	ENST00000540495		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000356219	ENST00000544327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000397355	ENST00000339570		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000397355	ENST00000415380		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000397355	ENST00000261693		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000397355	ENST00000376788		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000397355	ENST00000546215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000397355	ENST00000535005		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000397355	ENST00000541205		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000397355	ENST00000540495		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000397355	ENST00000544327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000429285	ENST00000339570		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000429285	ENST00000415380		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000429285	ENST00000261693		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000429285	ENST00000376788		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-3CDS	ENST00000429285	ENST00000546215		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000429285	ENST00000535005		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000429285	ENST00000541205		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000429285	ENST00000540495		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
intron-5UTR	ENST00000429285	ENST00000544327		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	NCOR2	chr12	125051854	-	SCARB1	chr12	125279814	-
5CDS-3UTR	ENST00000530639	ENST00000483354		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000530639	ENST00000380113		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000530639	ENST00000455664		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000530639	ENST00000399838		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000311599	ENST00000483354		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000311599	ENST00000380113		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000311599	ENST00000455664		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000311599	ENST00000399838		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378867	ENST00000483354		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378867	ENST00000380113		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378867	ENST00000455664		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000378867	ENST00000399838		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
intron-3UTR	ENST00000389693	ENST00000483354		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
intron-3UTR	ENST00000389693	ENST00000380113		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
intron-3UTR	ENST00000389693	ENST00000455664		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
intron-3UTR	ENST00000389693	ENST00000399838		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000527487	ENST00000483354		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000527487	ENST00000380113		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000527487	ENST00000455664		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
5CDS-3UTR	ENST00000527487	ENST00000399838		TCGA	RV	UCEC	TCGA-AJ-A3NF-01A	PRR5L	chr11	36424928	+	ITPA	chr20	3202487	+
In-frame	ENST00000337907	ENST00000377424		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000337907	ENST00000536305		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000337907	ENST00000535586		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000337907	ENST00000377414		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
In-frame	ENST00000377464	ENST00000377424		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000377464	ENST00000536305		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000377464	ENST00000535586		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000377464	ENST00000377414		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
In-frame	ENST00000400907	ENST00000377424		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000400907	ENST00000536305		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000400907	ENST00000535586		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000400907	ENST00000377414		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
Frame-shit	ENST00000400908	ENST00000377424		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000400908	ENST00000536305		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000400908	ENST00000535586		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
5CDS-intron	ENST00000400908	ENST00000377414		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-3CDS	ENST00000476556	ENST00000377424		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-intron	ENST00000476556	ENST00000536305		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-intron	ENST00000476556	ENST00000535586		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-intron	ENST00000476556	ENST00000377414		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-3CDS	ENST00000460659	ENST00000377424		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-intron	ENST00000460659	ENST00000536305		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-intron	ENST00000460659	ENST00000535586		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
intron-intron	ENST00000460659	ENST00000377414		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	RERE	chr1	8555123	-	SLC2A5	chr1	9118309	-
In-frame	ENST00000336665	ENST00000337019		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
Frame-shit	ENST00000336665	ENST00000366889		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000336665	ENST00000366888		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
5CDS-intron	ENST00000336665	ENST00000542669		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000304032	ENST00000337019		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
Frame-shit	ENST00000304032	ENST00000366889		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000304032	ENST00000366888		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
5CDS-intron	ENST00000304032	ENST00000542669		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000409538	ENST00000337019		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
Frame-shit	ENST00000409538	ENST00000366889		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000409538	ENST00000366888		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
5CDS-intron	ENST00000409538	ENST00000542669		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000428334	ENST00000337019		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
Frame-shit	ENST00000428334	ENST00000366889		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000428334	ENST00000366888		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
5CDS-intron	ENST00000428334	ENST00000542669		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
intron-3CDS	ENST00000409457	ENST00000337019		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
intron-3CDS	ENST00000409457	ENST00000366889		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
intron-3CDS	ENST00000409457	ENST00000366888		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
intron-intron	ENST00000409457	ENST00000542669		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	AGAP1	chr2	236792093	+	PACRG	chr6	163735859	+
In-frame	ENST00000202556	ENST00000286953		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000554880		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000555030		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000414262		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000553430		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
In-frame	ENST00000202556	ENST00000557040		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000202556	ENST00000553449		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
5CDS-intron	ENST00000202556	ENST00000554713		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000286953		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000554880		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000555030		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000414262		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000553430		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000423488	ENST00000557040		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000423488	ENST00000553449		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000423488	ENST00000554713		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000286953		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000554880		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000555030		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000414262		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000553430		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-3CDS	ENST00000555391	ENST00000557040		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000555391	ENST00000553449		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
intron-intron	ENST00000555391	ENST00000554713		TCGA	RV	UCEC	TCGA-B5-A3S1-01A	PPP1R13B	chr14	104313636	-	C14orf2	chr14	104381526	-
5CDS-3UTR	ENST00000539909	ENST00000593699		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000539909	ENST00000372499		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000539909	ENST00000496424		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000286621	ENST00000593699		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000286621	ENST00000372499		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000286621	ENST00000496424		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372734	ENST00000593699		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372734	ENST00000372499		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000372734	ENST00000496424		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541550	ENST00000593699		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541550	ENST00000372499		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541550	ENST00000496424		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000467840	ENST00000593699		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000467840	ENST00000372499		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
intron-3UTR	ENST00000467840	ENST00000496424		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ADK	chr10	76430027	+	C10orf11	chr10	78316967	+
5UTR-3CDS	ENST00000401950	ENST00000361545		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000401950	ENST00000223398		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000401950	ENST00000395060		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000333027	ENST00000361545		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000333027	ENST00000223398		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000333027	ENST00000395060		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000323630	ENST00000361545		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000323630	ENST00000223398		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000323630	ENST00000395060		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000351488	ENST00000361545		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000351488	ENST00000223398		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
5UTR-3CDS	ENST00000351488	ENST00000395060		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
intron-3CDS	ENST00000406629	ENST00000361545		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
intron-3CDS	ENST00000406629	ENST00000223398		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
intron-3CDS	ENST00000406629	ENST00000395060		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
3UTR-3CDS	ENST00000415511	ENST00000361545		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
3UTR-3CDS	ENST00000415511	ENST00000223398		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
3UTR-3CDS	ENST00000415511	ENST00000395060		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	MTMR3	chr22	30279348	+	CLIP2	chr7	73811404	+
Frame-shit	ENST00000409634	ENST00000316586		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
Frame-shit	ENST00000409634	ENST00000403346		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
Frame-shit	ENST00000409634	ENST00000401869		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-intron	ENST00000409634	ENST00000405883		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-intron	ENST00000409634	ENST00000405585		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-5UTR	ENST00000409634	ENST00000543554		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-intron	ENST00000409634	ENST00000478403		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-5UTR	ENST00000409634	ENST00000535007		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
Frame-shit	ENST00000333129	ENST00000316586		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
Frame-shit	ENST00000333129	ENST00000403346		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
Frame-shit	ENST00000333129	ENST00000401869		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-intron	ENST00000333129	ENST00000405883		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-intron	ENST00000333129	ENST00000405585		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-5UTR	ENST00000333129	ENST00000543554		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-intron	ENST00000333129	ENST00000478403		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5CDS-5UTR	ENST00000333129	ENST00000535007		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-3CDS	ENST00000482917	ENST00000316586		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-3CDS	ENST00000482917	ENST00000403346		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-3CDS	ENST00000482917	ENST00000401869		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-intron	ENST00000482917	ENST00000405883		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-intron	ENST00000482917	ENST00000405585		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-5UTR	ENST00000482917	ENST00000543554		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-intron	ENST00000482917	ENST00000478403		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
intron-5UTR	ENST00000482917	ENST00000535007		TCGA	RV	UCEC	TCGA-KP-A3VZ-01A	FIGN	chr2	164591413	-	STK25	chr2	242441123	-
5UTR-3CDS	ENST00000216181	ENST00000216281		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
5UTR-3CDS	ENST00000216181	ENST00000334701		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
5UTR-3CDS	ENST00000216181	ENST00000441629		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
5UTR-intron	ENST00000216181	ENST00000558600		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000475726	ENST00000216281		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000475726	ENST00000334701		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000475726	ENST00000441629		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-intron	ENST00000475726	ENST00000558600		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000401701	ENST00000216281		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000401701	ENST00000334701		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000401701	ENST00000441629		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-intron	ENST00000401701	ENST00000558600		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	MYH9	chr22	36783852	-	HSP90AA1	chr14	102550901	-
intron-3CDS	ENST00000486901	ENST00000521689		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000486901	ENST00000254898		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000486901	ENST00000524308		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000486901	ENST00000522025		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000486901	ENST00000520016		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-intron	ENST00000486901	ENST00000518238		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
In-frame	ENST00000374695	ENST00000521689		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
In-frame	ENST00000374695	ENST00000254898		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
In-frame	ENST00000374695	ENST00000524308		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
In-frame	ENST00000374695	ENST00000522025		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
In-frame	ENST00000374695	ENST00000520016		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
5CDS-intron	ENST00000374695	ENST00000518238		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000430507	ENST00000521689		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000430507	ENST00000254898		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000430507	ENST00000524308		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000430507	ENST00000522025		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-3CDS	ENST00000430507	ENST00000520016		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
intron-intron	ENST00000430507	ENST00000518238		TCGA	RV	UCEC	TCGA-FI-A3PV-01A	HSPG2	chr1	22165864	-	MATN2	chr8	98991114	+
5CDS-intron	ENST00000254480	ENST00000341885		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5CDS-intron	ENST00000254480	ENST00000468695		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5CDS-5UTR	ENST00000254480	ENST00000492007		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5CDS-5UTR	ENST00000254480	ENST00000373501		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5UTR-intron	ENST00000425518	ENST00000341885		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5UTR-intron	ENST00000425518	ENST00000468695		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5UTR-5UTR	ENST00000425518	ENST00000492007		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5UTR-5UTR	ENST00000425518	ENST00000373501		TCGA	RV	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33087549	-
5UTR-3CDS	ENST00000252725	ENST00000355540		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
5UTR-3CDS	ENST00000252725	ENST00000359863		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
5UTR-3CDS	ENST00000252725	ENST00000446306		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
5UTR-3CDS	ENST00000451682	ENST00000355540		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
5UTR-3CDS	ENST00000451682	ENST00000359863		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
5UTR-3CDS	ENST00000451682	ENST00000446306		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
intron-3CDS	ENST00000474880	ENST00000355540		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
intron-3CDS	ENST00000474880	ENST00000359863		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
intron-3CDS	ENST00000474880	ENST00000446306		TCGA	RV	UCEC	TCGA-AJ-A6NU-01A	ARPC1B	chr7	98972404	+	TRRAP	chr7	98586388	+
5UTR-3UTR	ENST00000394123	ENST00000460265		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000394123	ENST00000261366		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000394123	ENST00000395354		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000543466	ENST00000460265		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000543466	ENST00000261366		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000543466	ENST00000395354		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000356245	ENST00000460265		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000356245	ENST00000261366		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
5UTR-3UTR	ENST00000356245	ENST00000395354		TCGA	RV	UCEC	TCGA-AX-A3GI-01A	G3BP1	chr5	151151597	+	LMNB1	chr5	126140468	+
intron-3CDS	ENST00000431992	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000431992	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000431992	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000373422	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000373422	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000373422	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000257118	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000257118	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000257118	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000419414	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000419414	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000419414	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000373416	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000373416	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
intron-3CDS	ENST00000373416	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
5UTR-3CDS	ENST00000485928	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
5UTR-3CDS	ENST00000485928	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
5UTR-3CDS	ENST00000485928	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
5UTR-3CDS	ENST00000373418	ENST00000301295		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
5UTR-3CDS	ENST00000373418	ENST00000346986		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
5UTR-3CDS	ENST00000373418	ENST00000587891		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	PHC2	chr1	33815198	-	NLRP4	chr19	56382193	+
In-frame	ENST00000609104	ENST00000373382		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000609104	ENST00000263559		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000609104	ENST00000395098		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000609104	ENST00000546041		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000609104	ENST00000490696		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000609104	ENST00000541711		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000609104	ENST00000489794		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000277575	ENST00000373382		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000277575	ENST00000263559		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000277575	ENST00000395098		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000277575	ENST00000546041		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000277575	ENST00000490696		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000277575	ENST00000541711		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000277575	ENST00000489794		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000379237	ENST00000373382		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000379237	ENST00000263559		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000379237	ENST00000395098		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000379237	ENST00000546041		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000379237	ENST00000490696		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000379237	ENST00000541711		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000379237	ENST00000489794		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000443016	ENST00000373382		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000443016	ENST00000263559		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000443016	ENST00000395098		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000443016	ENST00000546041		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-intron	ENST00000443016	ENST00000490696		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-intron	ENST00000443016	ENST00000541711		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-intron	ENST00000443016	ENST00000489794		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000609853	ENST00000373382		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000609853	ENST00000263559		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000609853	ENST00000395098		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000609853	ENST00000546041		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-intron	ENST00000609853	ENST00000490696		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-intron	ENST00000609853	ENST00000541711		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
intron-intron	ENST00000609853	ENST00000489794		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	USP6NL	chr10	11543100	-	VPS26A	chr10	70915568	+
In-frame	ENST00000415912	ENST00000290167		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000415912	ENST00000542383		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000357071	ENST00000290167		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000357071	ENST00000542383		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000374893	ENST00000290167		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000374893	ENST00000542383		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000436918	ENST00000290167		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000436918	ENST00000542383		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000264205	ENST00000290167		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
In-frame	ENST00000264205	ENST00000542383		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000528294	ENST00000290167		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000528294	ENST00000542383		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	ECE1	chr1	21599192	-	WNT4	chr1	22448069	-
intron-3CDS	ENST00000399537	ENST00000425013		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399537	ENST00000389902		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000399537	ENST00000469375		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000430969	ENST00000425013		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000430969	ENST00000389902		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000430969	ENST00000469375		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000399434	ENST00000469375		TCGA	RV	UCEC	TCGA-AX-A3FX-01A	TNRC18	chr7	5446781	-	RNF216	chr7	5681007	-
Frame-shit	ENST00000585892	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5CDS-3UTR	ENST00000585892	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
Frame-shit	ENST00000314646	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5CDS-3UTR	ENST00000314646	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
Frame-shit	ENST00000359692	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5CDS-3UTR	ENST00000359692	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
Frame-shit	ENST00000389253	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5CDS-3UTR	ENST00000389253	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
Frame-shit	ENST00000355667	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5CDS-3UTR	ENST00000355667	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
Frame-shit	ENST00000408974	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5CDS-3UTR	ENST00000408974	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
intron-3CDS	ENST00000591819	ENST00000250237		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
intron-3UTR	ENST00000591819	ENST00000585885		TCGA	RV	UCEC	TCGA-D1-A3DG-01A	DNM2	chr19	10829079	+	QTRT1	chr19	10812626	+
5UTR-3CDS	ENST00000375743	ENST00000276297		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000375743	ENST00000358919		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000375743	ENST00000512044		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000375743	ENST00000316609		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000375743	ENST00000511869		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000375743	ENST00000510318		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-5UTR	ENST00000375743	ENST00000520226		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000537142	ENST00000276297		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000537142	ENST00000358919		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000537142	ENST00000512044		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000537142	ENST00000316609		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000537142	ENST00000511869		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000537142	ENST00000510318		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-5UTR	ENST00000537142	ENST00000520226		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000375733	ENST00000276297		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000375733	ENST00000358919		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000375733	ENST00000512044		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000375733	ENST00000316609		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000375733	ENST00000511869		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000375733	ENST00000510318		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-5UTR	ENST00000375733	ENST00000520226		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000448462	ENST00000276297		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000448462	ENST00000358919		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000448462	ENST00000512044		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000448462	ENST00000316609		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000448462	ENST00000511869		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000448462	ENST00000510318		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-5UTR	ENST00000448462	ENST00000520226		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000479282	ENST00000276297		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000479282	ENST00000358919		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-3CDS	ENST00000479282	ENST00000512044		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000479282	ENST00000316609		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000479282	ENST00000511869		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-intron	ENST00000479282	ENST00000510318		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
5UTR-5UTR	ENST00000479282	ENST00000520226		TCGA	RV	UCEC	TCGA-D1-A3JQ-01A	ZBTB17	chr1	16299534	-	DLC1	chr8	12973166	-
In-frame	ENST00000312865	ENST00000447857		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	MED25	chr19	50335672	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000312865	ENST00000593725		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	MED25	chr19	50335672	+	CCDC155	chr19	49910143	+
In-frame	ENST00000538643	ENST00000447857		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	MED25	chr19	50335672	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000538643	ENST00000593725		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	MED25	chr19	50335672	+	CCDC155	chr19	49910143	+
5CDS-intron	ENST00000393562	ENST00000300134		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000393562	ENST00000538913		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000393562	ENST00000543873		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000393562	ENST00000556155		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000393562	ENST00000537215		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
5CDS-intron	ENST00000393562	ENST00000454075		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000369620	ENST00000300134		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000369620	ENST00000538913		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000369620	ENST00000543873		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000369620	ENST00000556155		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000369620	ENST00000537215		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000369620	ENST00000454075		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000393564	ENST00000300134		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000393564	ENST00000538913		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000393564	ENST00000543873		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000393564	ENST00000556155		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000393564	ENST00000537215		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000393564	ENST00000454075		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000497281	ENST00000300134		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000497281	ENST00000538913		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000497281	ENST00000543873		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000497281	ENST00000556155		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000497281	ENST00000537215		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
intron-intron	ENST00000497281	ENST00000454075		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	G6PD	chrX	153759606	-	STAT6	chr12	57496773	-
5UTR-intron	ENST00000513024	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000513024	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5UTR-intron	ENST00000509638	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000508501	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512946	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000313860	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512632	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
5CDS-intron	ENST00000512820	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000503057	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000511496	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000514096	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509277	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000396595	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000381753	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000509454	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000503431		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000284440		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000504818		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000508768		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
intron-intron	ENST00000515785	ENST00000512788		TCGA	RV	UCEC	TCGA-A5-A7WK-01A	LIMCH1	chr4	41526495	+	UCHL1	chr4	41258610	+
In-frame	ENST00000215957	ENST00000368445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
In-frame	ENST00000215957	ENST00000368449		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
In-frame	ENST00000215957	ENST00000448116		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
In-frame	ENST00000215957	ENST00000368450		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
In-frame	ENST00000215957	ENST00000368453		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
In-frame	ENST00000215957	ENST00000606391		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
5CDS-intron	ENST00000215957	ENST00000490667		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000402631	ENST00000368445		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000402631	ENST00000368449		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000402631	ENST00000448116		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000402631	ENST00000368450		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000402631	ENST00000368453		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-3CDS	ENST00000402631	ENST00000606391		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-intron	ENST00000402631	ENST00000490667		TCGA	RV	UCEC	TCGA-PG-A914-01A	MICALL1	chr22	38302575	+	SHC1	chr1	154938993	-
intron-5UTR	ENST00000292205	ENST00000347370		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000292205	ENST00000349431		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000292205	ENST00000339385		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000292205	ENST00000348298		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000292205	ENST00000400929		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000292205	ENST00000360466		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000292205	ENST00000400930		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000292205	ENST00000491779		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000368474	ENST00000347370		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000368474	ENST00000349431		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000368474	ENST00000339385		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000368474	ENST00000348298		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000368474	ENST00000400929		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000368474	ENST00000360466		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000368474	ENST00000400930		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000368474	ENST00000491779		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000368471	ENST00000347370		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000368471	ENST00000349431		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368471	ENST00000339385		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000368471	ENST00000348298		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368471	ENST00000400929		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368471	ENST00000360466		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368471	ENST00000400930		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368471	ENST00000491779		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000471068	ENST00000347370		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000471068	ENST00000349431		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000339385		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000471068	ENST00000348298		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000400929		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000360466		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000400930		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000491779		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154580468	-	UBE2J2	chr1	1203372	-
In-frame	ENST00000350026	ENST00000337147		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000350026	ENST00000367075		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000350026	ENST00000392177		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
5CDS-5UTR	ENST00000350026	ENST00000476189		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000346085	ENST00000337147		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000346085	ENST00000367075		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000346085	ENST00000392177		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
5CDS-5UTR	ENST00000346085	ENST00000476189		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000367148	ENST00000337147		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000367148	ENST00000367075		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000367148	ENST00000392177		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
5CDS-5UTR	ENST00000367148	ENST00000476189		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000275248	ENST00000337147		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000275248	ENST00000367075		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
In-frame	ENST00000275248	ENST00000392177		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
5CDS-5UTR	ENST00000275248	ENST00000476189		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
intron-3CDS	ENST00000478761	ENST00000337147		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
intron-3CDS	ENST00000478761	ENST00000367075		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
intron-3CDS	ENST00000478761	ENST00000392177		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
intron-5UTR	ENST00000478761	ENST00000476189		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	ARID1B	chr6	157256710	+	EZR	chr6	159210403	-
intron-3CDS	ENST00000356725	ENST00000262623		TCGA	RV	UCEC	TCGA-A5-A1OH-01A	ZNF790	chr19	37340904	-	ATP4A	chr19	36044084	-
5CDS-5UTR	ENST00000253925	ENST00000227155		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000253925	ENST00000342935		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000253925	ENST00000530931		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000389547	ENST00000227155		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
5CDS-5UTR	ENST00000389547	ENST00000342935		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
5CDS-intron	ENST00000389547	ENST00000530931		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000530548	ENST00000227155		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
intron-5UTR	ENST00000530548	ENST00000342935		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
intron-intron	ENST00000530548	ENST00000530931		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	PPFIA1	chr11	70118542	+	CD82	chr11	44609025	+
In-frame	ENST00000358161	ENST00000309971		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
In-frame	ENST00000358161	ENST00000372770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000358161	ENST00000539582		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000358161	ENST00000494417		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
In-frame	ENST00000372739	ENST00000309971		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
In-frame	ENST00000372739	ENST00000372770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000372739	ENST00000539582		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000372739	ENST00000494417		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
In-frame	ENST00000372731	ENST00000309971		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
In-frame	ENST00000372731	ENST00000372770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000372731	ENST00000539582		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
5CDS-intron	ENST00000372731	ENST00000494417		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000475367	ENST00000309971		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000475367	ENST00000372770		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
intron-intron	ENST00000475367	ENST00000539582		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
intron-intron	ENST00000475367	ENST00000494417		TCGA	RV	UCEC	TCGA-D1-A3JP-01A	SPTAN1	chr9	131337624	+	GLE1	chr9	131284947	+
intron-3CDS	ENST00000583983	ENST00000265523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
intron-3CDS	ENST00000583983	ENST00000402924		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
Frame-shit	ENST00000578552	ENST00000265523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
Frame-shit	ENST00000578552	ENST00000402924		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
5UTR-3CDS	ENST00000320548	ENST00000265523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
5UTR-3CDS	ENST00000320548	ENST00000402924		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
5UTR-3CDS	ENST00000355130	ENST00000265523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
5UTR-3CDS	ENST00000355130	ENST00000402924		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
Frame-shit	ENST00000306823	ENST00000265523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
Frame-shit	ENST00000306823	ENST00000402924		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
5UTR-3CDS	ENST00000392358	ENST00000265523		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
5UTR-3CDS	ENST00000392358	ENST00000402924		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	GPS1	chr17	80009840	+	BLVRA	chr7	43840064	+
In-frame	ENST00000400301	ENST00000369849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	USP48	chr1	22109317	-	INA	chr10	105046792	+
In-frame	ENST00000308271	ENST00000369849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	USP48	chr1	22109317	-	INA	chr10	105046792	+
intron-3CDS	ENST00000374732	ENST00000369849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	USP48	chr1	22109317	-	INA	chr10	105046792	+
In-frame	ENST00000529637	ENST00000369849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	USP48	chr1	22109317	-	INA	chr10	105046792	+
intron-3CDS	ENST00000479177	ENST00000369849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	USP48	chr1	22109317	-	INA	chr10	105046792	+
In-frame	ENST00000421625	ENST00000369849		TCGA	RV	UCEC	TCGA-AJ-A3BF-01A	USP48	chr1	22109317	-	INA	chr10	105046792	+
5CDS-5UTR	ENST00000368315	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368315	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368315	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368315	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368315	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368315	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313695	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313695	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313695	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313695	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313695	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313695	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000361247	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000361247	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000361247	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000361247	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000361247	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000361247	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368316	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368316	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368316	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368316	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368316	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000368316	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000462460	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000462460	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000462460	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000462460	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000462460	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000462460	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-5UTR	ENST00000477754	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-5UTR	ENST00000477754	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-5UTR	ENST00000477754	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-5UTR	ENST00000477754	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-5UTR	ENST00000477754	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-5UTR	ENST00000477754	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313667	ENST00000492619		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313667	ENST00000292291		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313667	ENST00000356983		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313667	ENST00000335852		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313667	ENST00000368270		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
5CDS-5UTR	ENST00000313667	ENST00000540423		TCGA	RV	UCEC	TCGA-5B-A90C-01A	ARHGEF2	chr1	155935094	-	PAQR6	chr1	156214194	-
intron-3CDS	ENST00000535112	ENST00000466387		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000535112	ENST00000496558		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000535112	ENST00000361291		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000535112	ENST00000402739		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000535112	ENST00000540488		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000535112	ENST00000541047		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-3CDS	ENST00000535112	ENST00000343114		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000535112	ENST00000496251		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
intron-intron	ENST00000535112	ENST00000409266		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000466387		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000496558		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000361291		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000402739		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000540488		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000541047		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000396076	ENST00000343114		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000396076	ENST00000496251		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000396076	ENST00000409266		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000466387		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000496558		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000361291		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000402739		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000540488		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000541047		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
Frame-shit	ENST00000350669	ENST00000343114		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000350669	ENST00000496251		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
5CDS-intron	ENST00000350669	ENST00000409266		TCGA	RV	UCEC	TCGA-AJ-A3QS-01A	LDHB	chr12	21790005	-	CTNNA2	chr2	80620336	+
In-frame	ENST00000335542	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000335542	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000335542	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000335542	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000335542	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000335542	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000430179	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000430179	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000430179	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000430179	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000430179	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000430179	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-3CDS	ENST00000422159	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-3CDS	ENST00000422159	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-3CDS	ENST00000422159	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-intron	ENST00000422159	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-intron	ENST00000422159	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-intron	ENST00000422159	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000450603	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000450603	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000450603	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000450603	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000450603	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000450603	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000449554	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000449554	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000449554	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000449554	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000449554	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000449554	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-3CDS	ENST00000446937	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-3CDS	ENST00000446937	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-3CDS	ENST00000446937	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-intron	ENST00000446937	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-intron	ENST00000446937	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
intron-intron	ENST00000446937	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000457360	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000457360	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000457360	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000457360	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000457360	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000457360	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000437422	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000437422	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000437422	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000437422	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000437422	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000437422	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000439975	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000439975	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000439975	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000439975	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000439975	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000439975	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000287656	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000287656	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000287656	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000287656	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000287656	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000287656	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000449238	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000449238	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000449238	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000449238	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000449238	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000449238	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000429122	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000429122	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
In-frame	ENST00000429122	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000429122	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000429122	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000429122	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-3CDS	ENST00000476283	ENST00000397109		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-3CDS	ENST00000476283	ENST00000337354		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-3CDS	ENST00000476283	ENST00000350697		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-intron	ENST00000476283	ENST00000397117		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-intron	ENST00000476283	ENST00000383801		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-intron	ENST00000476283	ENST00000492602		TCGA	RV	UCEC	TCGA-PG-A915-01A	GHRL	chr3	10328388	-	SEC13	chr3	10343058	-
5UTR-5UTR	ENST00000359337	ENST00000381792		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000346753		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000406725		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000406856		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000442782		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000381792		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000346753		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000406725		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000406856		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000442782		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000381792		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000346753		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000406725		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000406856		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000442782		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50733148	-	TMPRSS6	chr22	37499458	-
5UTR-3CDS	ENST00000356056	ENST00000569795		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000356056	ENST00000413097		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000356056	ENST00000260376		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000356056	ENST00000287196		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-3CDS	ENST00000444904	ENST00000569795		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000444904	ENST00000413097		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000444904	ENST00000260376		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000444904	ENST00000287196		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-3CDS	ENST00000424560	ENST00000569795		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000424560	ENST00000413097		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000424560	ENST00000260376		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000424560	ENST00000287196		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-3CDS	ENST00000564571	ENST00000569795		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000564571	ENST00000413097		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000564571	ENST00000260376		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000564571	ENST00000287196		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-3CDS	ENST00000566885	ENST00000569795		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000566885	ENST00000413097		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000566885	ENST00000260376		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
5UTR-5UTR	ENST00000566885	ENST00000287196		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
intron-3CDS	ENST00000563542	ENST00000569795		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
intron-5UTR	ENST00000563542	ENST00000413097		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
intron-5UTR	ENST00000563542	ENST00000260376		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
intron-5UTR	ENST00000563542	ENST00000287196		TCGA	RV	UCEC	TCGA-AX-A3G4-01A	MYO9A	chr15	72410021	-	PARP6	chr15	72535040	-
In-frame	ENST00000368395	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368395	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368395	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368395	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368395	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368395	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000338684	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000338684	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000338684	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000338684	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000338684	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000338684	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000438413	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000438413	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000438413	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000438413	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000438413	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000438413	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000457295	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000457295	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000457295	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000457295	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000457295	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000457295	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5UTR-3CDS	ENST00000462215	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5UTR-3CDS	ENST00000462215	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5UTR-3CDS	ENST00000462215	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5UTR-3CDS	ENST00000462215	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5UTR-intron	ENST00000462215	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5UTR-5UTR	ENST00000462215	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368392	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368392	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368392	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368392	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368392	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368392	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368393	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368393	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368393	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368393	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368393	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368393	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368390	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368390	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368390	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368390	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368390	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368390	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368396	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368396	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368396	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368396	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368396	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368396	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000343256	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000343256	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000343256	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000343256	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000343256	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000343256	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368398	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368398	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368398	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368398	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368398	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368398	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368389	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368389	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368389	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000368389	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000368389	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000368389	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000342482	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000342482	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000342482	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000342482	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000342482	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000342482	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000337604	ENST00000368373		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000337604	ENST00000327247		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000337604	ENST00000427500		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000337604	ENST00000536770		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-intron	ENST00000337604	ENST00000428024		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
5CDS-5UTR	ENST00000337604	ENST00000493842		TCGA	RV	UCEC	TCGA-BK-A139-02A	MUC1	chr1	155162577	-	GBA	chr1	155210508	-
In-frame	ENST00000267101	ENST00000376075		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
5CDS-intron	ENST00000267101	ENST00000490030		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-3CDS	ENST00000450146	ENST00000376075		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-intron	ENST00000450146	ENST00000490030		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-3CDS	ENST00000415288	ENST00000376075		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-intron	ENST00000415288	ENST00000490030		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-3CDS	ENST00000553131	ENST00000376075		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-intron	ENST00000553131	ENST00000490030		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
In-frame	ENST00000411731	ENST00000376075		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
5CDS-intron	ENST00000411731	ENST00000490030		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-3CDS	ENST00000549832	ENST00000376075		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
intron-intron	ENST00000549832	ENST00000490030		TCGA	RV	UCEC	TCGA-AJ-A3I9-01A	ERBB3	chr12	56474166	+	COX4I2	chr20	30231207	+
5CDS-intron	ENST00000381227	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-01A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
Frame-shit	ENST00000394936	ENST00000348225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	PSAP	chr10	73576056	-	PTN	chr7	136938384	-
Frame-shit	ENST00000394936	ENST00000393083		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	PSAP	chr10	73576056	-	PTN	chr7	136938384	-
Frame-shit	ENST00000394934	ENST00000348225		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	PSAP	chr10	73576056	-	PTN	chr7	136938384	-
Frame-shit	ENST00000394934	ENST00000393083		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	PSAP	chr10	73576056	-	PTN	chr7	136938384	-
In-frame	ENST00000296292	ENST00000462138		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
Frame-shit	ENST00000296292	ENST00000423525		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000296292	ENST00000461139		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000296292	ENST00000423516		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000296292	ENST00000296289		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
In-frame	ENST00000394738	ENST00000462138		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
Frame-shit	ENST00000394738	ENST00000423525		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000394738	ENST00000461139		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
5CDS-intron	ENST00000394738	ENST00000423516		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
5CDS-5UTR	ENST00000394738	ENST00000296289		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	RFT1	chr3	53159925	-	TKT	chr3	53276258	-
In-frame	ENST00000406875	ENST00000263549		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139726148	-
5CDS-intron	ENST00000406875	ENST00000470515		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139726148	-
In-frame	ENST00000428878	ENST00000263549		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139726148	-
5CDS-intron	ENST00000428878	ENST00000470515		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139726148	-
In-frame	ENST00000342645	ENST00000263549		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139726148	-
5CDS-intron	ENST00000342645	ENST00000470515		TCGA	RV	UCEC	TCGA-A5-A2K4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139726148	-
In-frame	ENST00000535622	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000535622	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000535622	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000535622	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000535622	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000535622	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000535622	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000400246	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400246	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400246	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400246	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400246	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400246	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400246	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000266091	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000266091	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000266091	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000266091	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000266091	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000266091	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000266091	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000382105	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382105	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382105	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382105	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382105	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382105	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382105	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000400249	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400249	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400249	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400249	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400249	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400249	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400249	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000382112	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382112	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382112	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382112	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382112	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382112	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382112	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000382111	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382111	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382111	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382111	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382111	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000382111	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000382111	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000400248	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400248	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400248	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400248	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400248	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400248	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400248	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-3CDS	ENST00000494060	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-intron	ENST00000494060	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-5UTR	ENST00000494060	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-intron	ENST00000494060	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-5UTR	ENST00000494060	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-5UTR	ENST00000494060	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-intron	ENST00000494060	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000536766	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000536766	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000536766	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000536766	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000536766	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000536766	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000536766	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
In-frame	ENST00000400242	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400242	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400242	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400242	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400242	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-5UTR	ENST00000400242	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
5CDS-intron	ENST00000400242	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-3CDS	ENST00000539165	ENST00000317361		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-intron	ENST00000539165	ENST00000399767		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-5UTR	ENST00000539165	ENST00000399774		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-intron	ENST00000539165	ENST00000399765		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-5UTR	ENST00000539165	ENST00000342111		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-5UTR	ENST00000539165	ENST00000551952		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
intron-intron	ENST00000539165	ENST00000473439		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	DEPDC5	chr22	32154619	+	BID	chr22	18232940	-
Frame-shit	ENST00000469224	ENST00000442092		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000469224	ENST00000266022		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000469224	ENST00000443081		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000469224	ENST00000539992		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000469224	ENST00000441115		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000469224	ENST00000422955		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000469224	ENST00000421682		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000394965	ENST00000442092		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000394965	ENST00000266022		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000394965	ENST00000443081		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000394965	ENST00000539992		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000394965	ENST00000441115		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000394965	ENST00000422955		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000394965	ENST00000421682		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000310271	ENST00000442092		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000310271	ENST00000266022		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000310271	ENST00000443081		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000310271	ENST00000539992		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000310271	ENST00000441115		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000310271	ENST00000422955		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000310271	ENST00000421682		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000484952	ENST00000442092		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000484952	ENST00000266022		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000484952	ENST00000443081		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
Frame-shit	ENST00000484952	ENST00000539992		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000484952	ENST00000441115		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000484952	ENST00000422955		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5CDS-intron	ENST00000484952	ENST00000421682		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	ALAS1	chr3	52242263	+	RBM6	chr3	50112634	+
5UTR-intron	ENST00000337959	ENST00000331018		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000337959	ENST00000266254		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000337959	ENST00000445824		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000263246	ENST00000331018		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000263246	ENST00000266254		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
5UTR-intron	ENST00000263246	ENST00000445824		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000407585	ENST00000331018		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000407585	ENST00000266254		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000407585	ENST00000445824		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000403744	ENST00000331018		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000403744	ENST00000266254		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000403744	ENST00000445824		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000402229	ENST00000331018		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000402229	ENST00000266254		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
intron-intron	ENST00000402229	ENST00000445824		TCGA	RV	UCEC	TCGA-BK-A139-02A	PACSIN2	chr22	43411027	-	TTLL1	chr22	43447893	-
In-frame	ENST00000394287	ENST00000360317		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000394287	ENST00000394175		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000394287	ENST00000309481		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000394287	ENST00000520542		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000394287	ENST00000418519		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000394287	ENST00000394179		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000300651	ENST00000360317		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000300651	ENST00000394175		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000300651	ENST00000309481		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000300651	ENST00000520542		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000300651	ENST00000418519		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
In-frame	ENST00000300651	ENST00000394179		TCGA	RV	UCEC	TCGA-5B-A90C-01A	MED1	chr17	37575970	-	GSDMB	chr17	38062524	-
Frame-shit	ENST00000437809	ENST00000295688		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
In-frame	ENST00000437809	ENST00000368259		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
Frame-shit	ENST00000437809	ENST00000368261		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
In-frame	ENST00000437809	ENST00000472765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
5CDS-intron	ENST00000437809	ENST00000368256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
Frame-shit	ENST00000368331	ENST00000295688		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
In-frame	ENST00000368331	ENST00000368259		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
Frame-shit	ENST00000368331	ENST00000368261		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
In-frame	ENST00000368331	ENST00000472765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
5CDS-intron	ENST00000368331	ENST00000368256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
Frame-shit	ENST00000271883	ENST00000295688		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
In-frame	ENST00000271883	ENST00000368259		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
Frame-shit	ENST00000271883	ENST00000368261		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
In-frame	ENST00000271883	ENST00000472765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
5CDS-intron	ENST00000271883	ENST00000368256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000361040	ENST00000295688		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000361040	ENST00000368259		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000361040	ENST00000368261		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000361040	ENST00000472765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-intron	ENST00000361040	ENST00000368256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000471341	ENST00000295688		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000471341	ENST00000368259		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000471341	ENST00000368261		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-3CDS	ENST00000471341	ENST00000472765		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
intron-intron	ENST00000471341	ENST00000368256		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	GON4L	chr1	155726749	-	CCT3	chr1	156279094	-
5CDS-intron	ENST00000412585	ENST00000398158		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000412585	ENST00000398165		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000412585	ENST00000359624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000412585	ENST00000352178		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000412585	ENST00000398168		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000412585	ENST00000544202		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
5CDS-intron	ENST00000412585	ENST00000470912		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000398158		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000398165		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000359624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000352178		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000398168		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000544202		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000425848	ENST00000470912		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000398158		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000398165		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000359624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000352178		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000398168		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000544202		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000450871	ENST00000470912		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000398158		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000398165		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000359624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000352178		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000398168		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000544202		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000359635	ENST00000470912		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000398158		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000398165		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000359624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000352178		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000398168		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000544202		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000435618	ENST00000470912		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000398158		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000398165		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000359624		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000352178		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000398168		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000544202		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
intron-intron	ENST00000421349	ENST00000470912		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	HLA-B	chr6	31321649	-	CBS	chr21	44476011	-
In-frame	ENST00000263773	ENST00000317306		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FNBP4	chr11	47752926	-	INSL3	chr19	17927868	-
Frame-shit	ENST00000263773	ENST00000379695		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FNBP4	chr11	47752926	-	INSL3	chr19	17927868	-
intron-3CDS	ENST00000534003	ENST00000317306		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FNBP4	chr11	47752926	-	INSL3	chr19	17927868	-
intron-3CDS	ENST00000534003	ENST00000379695		TCGA	RV	UCEC	TCGA-AJ-A3NH-01A	FNBP4	chr11	47752926	-	INSL3	chr19	17927868	-
Frame-shit	ENST00000509807	ENST00000315717		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000509807	ENST00000295685		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
5CDS-3UTR	ENST00000509807	ENST00000477992		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000273064	ENST00000315717		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000273064	ENST00000295685		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
5CDS-3UTR	ENST00000273064	ENST00000477992		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000542068	ENST00000315717		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000542068	ENST00000295685		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
5CDS-3UTR	ENST00000542068	ENST00000477992		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000295701	ENST00000315717		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000295701	ENST00000295685		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
5CDS-3UTR	ENST00000295701	ENST00000477992		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
3UTR-3CDS	ENST00000489687	ENST00000315717		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
3UTR-3CDS	ENST00000489687	ENST00000295685		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
3UTR-3UTR	ENST00000489687	ENST00000477992		TCGA	RV	UCEC	TCGA-5B-A90C-01A	RQCD1	chr2	219433701	+	ARPC2	chr2	219103387	+
Frame-shit	ENST00000589018	ENST00000301246		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
Frame-shit	ENST00000589018	ENST00000588605		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
In-frame	ENST00000351218	ENST00000301246		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
In-frame	ENST00000351218	ENST00000588605		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
Frame-shit	ENST00000392144	ENST00000301246		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
Frame-shit	ENST00000392144	ENST00000588605		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
In-frame	ENST00000514101	ENST00000301246		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
In-frame	ENST00000514101	ENST00000588605		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
intron-3CDS	ENST00000586732	ENST00000301246		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
intron-3CDS	ENST00000586732	ENST00000588605		TCGA	RV	UCEC	TCGA-AJ-A3BD-01A	ZFP30	chr19	38134166	-	C19orf33	chr19	38795015	+
In-frame	ENST00000524189	ENST00000357410		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
In-frame	ENST00000524189	ENST00000327619		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
5CDS-intron	ENST00000524189	ENST00000497428		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
5CDS-intron	ENST00000524189	ENST00000317304		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
intron-3CDS	ENST00000521515	ENST00000357410		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
intron-3CDS	ENST00000521515	ENST00000327619		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
intron-intron	ENST00000521515	ENST00000497428		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
intron-intron	ENST00000521515	ENST00000317304		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
Frame-shit	ENST00000404075	ENST00000357410		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
Frame-shit	ENST00000404075	ENST00000327619		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
5CDS-intron	ENST00000404075	ENST00000497428		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
5CDS-intron	ENST00000404075	ENST00000317304		TCGA	RV	UCEC	TCGA-DF-A2KR-01A	KIF13B	chr8	28950262	-	EYA2	chr20	45771698	+
Frame-shit	ENST00000215567	ENST00000242783		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5CDS-intron	ENST00000215567	ENST00000587429		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5CDS-intron	ENST00000215567	ENST00000342216		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-3CDS	ENST00000596073	ENST00000242783		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-intron	ENST00000596073	ENST00000587429		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-intron	ENST00000596073	ENST00000342216		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-3CDS	ENST00000600083	ENST00000242783		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-intron	ENST00000600083	ENST00000587429		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-intron	ENST00000600083	ENST00000342216		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-3CDS	ENST00000436007	ENST00000242783		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-intron	ENST00000436007	ENST00000587429		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5UTR-intron	ENST00000436007	ENST00000342216		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
3UTR-3CDS	ENST00000596164	ENST00000242783		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
3UTR-intron	ENST00000596164	ENST00000587429		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
3UTR-intron	ENST00000596164	ENST00000342216		TCGA	RV	UCEC	TCGA-A5-A3LP-01A	TECR	chr19	14640523	+	PKN1	chr19	14580153	+
5CDS-intron	ENST00000381227	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000381227	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000431623	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-intron	ENST00000441246	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5CDS-intron	ENST00000314595	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000507166		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000358575		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000337488		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000507922		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000306932		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
intron-intron	ENST00000510355	ENST00000510668		TCGA	RV	UCEC	TCGA-BK-A139-02A	POLR2B	chr4	57845170	+	FIP1L1	chr4	54308820	+
5UTR-5UTR	ENST00000393328	ENST00000372969		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000393328	ENST00000372967		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000393331	ENST00000372969		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000393331	ENST00000372967		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000347630	ENST00000372969		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000347630	ENST00000372967		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000504102	ENST00000372969		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000504102	ENST00000372967		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000503676	ENST00000372969		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
intron-5UTR	ENST00000503676	ENST00000372967		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000513080	ENST00000372969		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
5UTR-5UTR	ENST00000513080	ENST00000372967		TCGA	RV	UCEC	TCGA-EY-A4KR-01A	SPOP	chr17	47755295	-	NDUFS5	chr1	39494395	+
intron-intron	ENST00000556679	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556679	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556679	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556679	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556679	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000556679	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000456570	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000456570	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000456570	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000456570	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000456570	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000456570	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000477310	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000477310	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000477310	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000477310	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000477310	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000477310	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000425368	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000425368	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000425368	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000425368	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000425368	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
5CDS-intron	ENST00000425368	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000497841	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000497841	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000497841	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000497841	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000497841	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000497841	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000417261	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000417261	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000417261	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000417261	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000417261	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000417261	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000427888	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000427888	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000427888	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000427888	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000427888	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000427888	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000459734	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000459734	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000459734	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000459734	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000459734	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000459734	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000455591	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000455591	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000455591	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000455591	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000455591	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000455591	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000433503	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000433503	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000433503	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000433503	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000433503	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000433503	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000474621	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000474621	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000474621	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000474621	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000474621	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000474621	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000424727	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000424727	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000424727	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000424727	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000424727	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000424727	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000436692	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000436692	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000436692	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000436692	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000436692	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000436692	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000473139	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000473139	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000473139	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000473139	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000473139	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000473139	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000399981	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000399981	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000399981	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000399981	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000399981	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000399981	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419920	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419920	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419920	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419920	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419920	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419920	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000465211	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000465211	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000465211	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000465211	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000465211	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000465211	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000375455	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000375455	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000375455	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000375455	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000375455	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000375455	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489605	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489605	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489605	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489605	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489605	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000489605	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000426239	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000426239	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000426239	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000426239	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000426239	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000426239	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419411	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419411	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419411	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419411	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419411	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000419411	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000460958	ENST00000300134		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000460958	ENST00000538913		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000460958	ENST00000543873		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000460958	ENST00000556155		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000460958	ENST00000537215		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
intron-intron	ENST00000460958	ENST00000454075		TCGA	RV	UCEC	TCGA-AX-A3G3-01A	CFB	chr6	31919861	+	STAT6	chr12	57496773	-
Frame-shit	ENST00000260502	ENST00000370225		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000260502	ENST00000535881		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000260502	ENST00000536513		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000260502	ENST00000465352		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000260502	ENST00000535735		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
Frame-shit	ENST00000370244	ENST00000370225		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370244	ENST00000535881		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370244	ENST00000536513		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370244	ENST00000465352		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370244	ENST00000535735		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
In-frame	ENST00000370243	ENST00000370225		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370243	ENST00000535881		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370243	ENST00000536513		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370243	ENST00000465352		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370243	ENST00000535735		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
In-frame	ENST00000370247	ENST00000370225		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370247	ENST00000535881		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370247	ENST00000536513		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370247	ENST00000465352		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-intron	ENST00000370247	ENST00000535735		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-3CDS	ENST00000539242	ENST00000370225		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000539242	ENST00000535881		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000539242	ENST00000536513		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000539242	ENST00000465352		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000539242	ENST00000535735		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-3CDS	ENST00000466632	ENST00000370225		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000466632	ENST00000535881		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000466632	ENST00000536513		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000466632	ENST00000465352		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
intron-intron	ENST00000466632	ENST00000535735		TCGA	RV	UCEC	TCGA-AJ-A3EJ-01A	BCAR3	chr1	94054534	-	ABCA4	chr1	94495187	-
5CDS-5UTR	ENST00000294981	ENST00000400520		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000294981	ENST00000496748		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000294981	ENST00000375111		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000367103	ENST00000400520		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000367103	ENST00000496748		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
5CDS-5UTR	ENST00000367103	ENST00000375111		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
intron-5UTR	ENST00000479009	ENST00000400520		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
intron-5UTR	ENST00000479009	ENST00000496748		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
intron-5UTR	ENST00000479009	ENST00000375111		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	MAPKAPK2	chr1	206858853	+	PLA2G2A	chr1	20305372	-
5UTR-3CDS	ENST00000557982	ENST00000300057		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
5UTR-5UTR	ENST00000557982	ENST00000559894		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
In-frame	ENST00000561224	ENST00000300057		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000561224	ENST00000559894		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
In-frame	ENST00000300056	ENST00000300057		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000300056	ENST00000559894		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
In-frame	ENST00000561257	ENST00000300057		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000561257	ENST00000559894		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
In-frame	ENST00000559170	ENST00000300057		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
5CDS-5UTR	ENST00000559170	ENST00000559894		TCGA	RV	UCEC	TCGA-EO-A1Y7-01A	PEX11A	chr15	90233808	-	MESP1	chr15	90293458	-
Frame-shit	ENST00000360586	ENST00000395425		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
Frame-shit	ENST00000360586	ENST00000247191		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
intron-3CDS	ENST00000420358	ENST00000395425		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
intron-3CDS	ENST00000420358	ENST00000247191		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
intron-3CDS	ENST00000359167	ENST00000395425		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
intron-3CDS	ENST00000359167	ENST00000247191		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
5UTR-3CDS	ENST00000421192	ENST00000395425		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
5UTR-3CDS	ENST00000421192	ENST00000247191		TCGA	RV	UCEC	TCGA-5B-A90C-01A	WDHD1	chr14	55493429	-	DLGAP5	chr14	55621524	-
5UTR-5UTR	ENST00000403668	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000403668	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-5UTR	ENST00000444075	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000444075	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-5UTR	ENST00000287701	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000287701	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-5UTR	ENST00000558662	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000558662	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-5UTR	ENST00000523613	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000523613	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-5UTR	ENST00000397358	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000397358	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-5UTR	ENST00000519047	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
5UTR-intron	ENST00000519047	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
intron-5UTR	ENST00000355231	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
intron-intron	ENST00000355231	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
intron-5UTR	ENST00000524238	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
intron-intron	ENST00000524238	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
intron-5UTR	ENST00000517386	ENST00000301908		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
intron-intron	ENST00000517386	ENST00000522209		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	HMBOX1	chr8	28748195	+	PNOC	chr8	28186652	+
Frame-shit	ENST00000504387	ENST00000340645		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
Frame-shit	ENST00000504387	ENST00000393667		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000504387	ENST00000472829		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
In-frame	ENST00000379446	ENST00000340645		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
In-frame	ENST00000379446	ENST00000393667		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000379446	ENST00000472829		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
In-frame	ENST00000379433	ENST00000340645		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
In-frame	ENST00000379433	ENST00000393667		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
5CDS-intron	ENST00000379433	ENST00000472829		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
intron-3CDS	ENST00000508800	ENST00000340645		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
intron-3CDS	ENST00000508800	ENST00000393667		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
intron-intron	ENST00000508800	ENST00000472829		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	NEDD9	chr6	11213514	-	GOLGB1	chr3	121388202	-
In-frame	ENST00000562901	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000562901	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000562901	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000562901	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000562901	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000261875	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000261875	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000261875	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000261875	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000261875	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000442729	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000442729	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000442729	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000442729	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000442729	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000565299	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000565299	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000565299	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000565299	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000565299	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000568793	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000568793	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000568793	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000568793	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000568793	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000566074	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000566074	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000566074	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000566074	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000566074	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000566511	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000566511	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000566511	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000566511	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000566511	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000569894	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000569894	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
Frame-shit	ENST00000569894	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000569894	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
5CDS-3UTR	ENST00000569894	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000561763	ENST00000372853		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000561763	ENST00000452446		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000561763	ENST00000372850		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
intron-3CDS	ENST00000561763	ENST00000372847		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
intron-3UTR	ENST00000561763	ENST00000483206		TCGA	RV	UCEC	TCGA-EY-A210-01A	PTPLAD1	chr15	65851069	+	URM1	chr9	131150095	+
In-frame	ENST00000406875	ENST00000263549		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139728488	-
5CDS-intron	ENST00000406875	ENST00000470515		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139728488	-
In-frame	ENST00000428878	ENST00000263549		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139728488	-
5CDS-intron	ENST00000428878	ENST00000470515		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139728488	-
In-frame	ENST00000342645	ENST00000263549		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139728488	-
5CDS-intron	ENST00000342645	ENST00000470515		TCGA	RV	UCEC	TCGA-KP-A3W4-01A	HIPK2	chr7	139415731	-	PARP12	chr7	139728488	-
5CDS-intron	ENST00000405308	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
5CDS-intron	ENST00000405308	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
5CDS-intron	ENST00000405308	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
5CDS-intron	ENST00000405308	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
5CDS-intron	ENST00000405308	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000359803	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000359803	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000359803	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000359803	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000359803	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395569	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395569	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395569	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395569	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395569	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395566	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395566	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395566	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395566	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395566	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000533283	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000533283	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000533283	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000533283	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000533283	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000407067	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000407067	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000407067	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000407067	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
intron-intron	ENST00000407067	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395565	ENST00000366794		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395565	ENST00000490921		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395565	ENST00000366792		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395565	ENST00000366791		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
3UTR-intron	ENST00000395565	ENST00000366790		TCGA	RV	UCEC	TCGA-B5-A3FD-01A	MDK	chr11	46405349	+	PARP1	chr1	224102800	-
In-frame	ENST00000320876	ENST00000261597		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SMCHD1	chr18	2656260	+	NDC80	chr18	2601395	+
In-frame	ENST00000261598	ENST00000261597		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SMCHD1	chr18	2656260	+	NDC80	chr18	2601395	+
intron-3CDS	ENST00000609587	ENST00000261597		TCGA	RV	UCEC	TCGA-2E-A9G8-01A	SMCHD1	chr18	2656260	+	NDC80	chr18	2601395	+
Frame-shit	ENST00000339859	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000339859	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000339859	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000339859	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000339859	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000408019	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000408019	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000408019	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000408019	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000408019	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000428547	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000428547	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000428547	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000428547	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000428547	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000394811	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000394811	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000394811	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000394811	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000394811	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000497106	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000497106	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000497106	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000497106	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000497106	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000422491	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000422491	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000422491	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000422491	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
intron-3CDS	ENST00000422491	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000319786	ENST00000540871		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000319786	ENST00000261479		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
In-frame	ENST00000319786	ENST00000553809		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000319786	ENST00000555764		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
Frame-shit	ENST00000319786	ENST00000556506		TCGA	RV	UCEC	TCGA-B5-A5OD-01A	USP54	chr10	75331179	-	PSMA6	chr14	35786455	+
5UTR-3CDS	ENST00000536306	ENST00000331738		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000536306	ENST00000354654		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000536306	ENST00000392442		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000331738		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-3CDS	ENST00000543897	ENST00000354654		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5UTR-5UTR	ENST00000543897	ENST00000392442		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000331738		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
Frame-shit	ENST00000336229	ENST00000354654		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
5CDS-5UTR	ENST00000336229	ENST00000392442		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000331738		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-3CDS	ENST00000538116	ENST00000354654		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
intron-5UTR	ENST00000538116	ENST00000392442		TCGA	RV	UCEC	TCGA-EY-A3QX-01A	ZCCHC8	chr12	122983374	-	RSRC2	chr12	122990253	-
In-frame	ENST00000263620	ENST00000397641		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	ARID3A	chr19	929896	+	MORC2	chr22	31328756	-
In-frame	ENST00000263620	ENST00000215862		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	ARID3A	chr19	929896	+	MORC2	chr22	31328756	-
5CDS-intron	ENST00000263620	ENST00000469915		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	ARID3A	chr19	929896	+	MORC2	chr22	31328756	-
intron-3CDS	ENST00000592216	ENST00000397641		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	ARID3A	chr19	929896	+	MORC2	chr22	31328756	-
intron-3CDS	ENST00000592216	ENST00000215862		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	ARID3A	chr19	929896	+	MORC2	chr22	31328756	-
intron-intron	ENST00000592216	ENST00000469915		TCGA	RV	UCEC	TCGA-EY-A2ON-01A	ARID3A	chr19	929896	+	MORC2	chr22	31328756	-
5UTR-3CDS	ENST00000377022	ENST00000304457		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-3CDS	ENST00000377022	ENST00000376936		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-3UTR	ENST00000377022	ENST00000544779		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-intron	ENST00000377022	ENST00000485606		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-3CDS	ENST00000344008	ENST00000304457		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-3CDS	ENST00000344008	ENST00000376936		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-3UTR	ENST00000344008	ENST00000544779		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
5UTR-intron	ENST00000344008	ENST00000485606		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
intron-3CDS	ENST00000478728	ENST00000304457		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
intron-3CDS	ENST00000478728	ENST00000376936		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
intron-3UTR	ENST00000478728	ENST00000544779		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
intron-intron	ENST00000478728	ENST00000485606		TCGA	RV	UCEC	TCGA-AX-A3G6-01A	CASZ1	chr1	10856621	-	EXOSC10	chr1	11131030	-
In-frame	ENST00000264982	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000264982	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000264982	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000264982	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000264982	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000542237	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000542237	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000542237	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000542237	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000542237	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000489254	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000489254	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
intron-3CDS	ENST00000489254	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
intron-intron	ENST00000489254	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
intron-intron	ENST00000489254	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000484888	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000484888	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000484888	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000484888	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000484888	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000481834	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000481834	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000481834	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000481834	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000481834	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000478673	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000478673	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5UTR-3CDS	ENST00000478673	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000478673	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5UTR-intron	ENST00000478673	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000464035	ENST00000345003		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
Frame-shit	ENST00000464035	ENST00000296048		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
In-frame	ENST00000464035	ENST00000483267		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000464035	ENST00000484197		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-intron	ENST00000464035	ENST00000479119		TCGA	RV	UCEC	TCGA-AJ-A3EM-01A	CEP70	chr3	138289876	-	GYG1	chr3	148741840	+
5CDS-3UTR	ENST00000372037	ENST00000593699		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	77818424	+
5CDS-3UTR	ENST00000372037	ENST00000372499		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	77818424	+
5CDS-intron	ENST00000372037	ENST00000496424		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	77818424	+
intron-3UTR	ENST00000480152	ENST00000593699		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	77818424	+
intron-3UTR	ENST00000480152	ENST00000372499		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	77818424	+
intron-intron	ENST00000480152	ENST00000496424		TCGA	RV	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	77818424	+
In-frame	ENST00000348547	ENST00000374837		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000348547	ENST00000360668		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000348547	ENST00000397709		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
5CDS-intron	ENST00000348547	ENST00000476428		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000357394	ENST00000374837		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000357394	ENST00000360668		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000357394	ENST00000397709		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
5CDS-intron	ENST00000357394	ENST00000476428		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000279052	ENST00000374837		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000279052	ENST00000360668		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000279052	ENST00000397709		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
5CDS-intron	ENST00000279052	ENST00000476428		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000447986	ENST00000374837		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000447986	ENST00000360668		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000447986	ENST00000397709		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
5CDS-intron	ENST00000447986	ENST00000476428		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
3UTR-3CDS	ENST00000482338	ENST00000374837		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
3UTR-3CDS	ENST00000482338	ENST00000360668		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
3UTR-3CDS	ENST00000482338	ENST00000397709		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
3UTR-intron	ENST00000482338	ENST00000476428		TCGA	RV	UCEC	TCGA-E6-A8L9-01A	ERGIC3	chr20	34136618	+	MAP1LC3A	chr20	33147012	+
In-frame	ENST00000369061	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369061	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369061	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369061	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369061	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000357555	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000357555	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000358487	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000358487	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000356226	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000356226	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369060	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369060	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000369059	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369059	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000346997	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000346997	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000457416	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000457416	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000351936	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000351936	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000360144	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000360144	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
In-frame	ENST00000369056	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000369056	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000490349	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-5UTR	ENST00000490349	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-3CDS	ENST00000359354	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
intron-5UTR	ENST00000359354	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000392903		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000260777		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000355371		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
Frame-shit	ENST00000478859	ENST00000392901		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-5UTR	ENST00000478859	ENST00000497044		TCGA	RV	UCEC	TCGA-5B-A90C-01A	FGFR2	chr10	123243212	-	KIAA1598	chr10	118708508	-
5CDS-intron	ENST00000345512	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000345512	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000345512	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000345512	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000345512	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000345512	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000373779	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000373779	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000373779	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000373779	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000373779	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000373779	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000356870	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000356870	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000356870	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000356870	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000356870	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000356870	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000323874	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000323874	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000323874	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000323874	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000323874	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000323874	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000428026	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000428026	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000428026	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000428026	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000428026	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000428026	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000460170	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000460170	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000460170	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000460170	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000460170	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
5CDS-intron	ENST00000460170	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000415600	ENST00000376030		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000415600	ENST00000503743		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000415600	ENST00000422387		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000415600	ENST00000361144		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000415600	ENST00000400798		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000415600	ENST00000400797		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	PTPRU	chr1	29602268	+	KAZN	chr1	14631085	+
intron-intron	ENST00000254066	ENST00000558331		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000254066	ENST00000251363		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000254066	ENST00000559450		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000254066	ENST00000559336		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000254066	ENST00000595722		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-intron	ENST00000394089	ENST00000558331		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-5UTR	ENST00000394089	ENST00000251363		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-5UTR	ENST00000394089	ENST00000559450		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-5UTR	ENST00000394089	ENST00000559336		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-intron	ENST00000394089	ENST00000595722		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-intron	ENST00000425707	ENST00000558331		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-5UTR	ENST00000425707	ENST00000251363		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-5UTR	ENST00000425707	ENST00000559450		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-5UTR	ENST00000425707	ENST00000559336		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
5UTR-intron	ENST00000425707	ENST00000595722		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000394086	ENST00000558331		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000394086	ENST00000251363		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000394086	ENST00000559450		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000394086	ENST00000559336		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000394086	ENST00000595722		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000394081	ENST00000558331		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000394081	ENST00000251363		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000394081	ENST00000559450		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000394081	ENST00000559336		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000394081	ENST00000595722		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000420042	ENST00000558331		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000420042	ENST00000251363		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000420042	ENST00000559450		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-5UTR	ENST00000420042	ENST00000559336		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
intron-intron	ENST00000420042	ENST00000595722		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	RARA	chr17	38474700	+	CERS4	chr19	8315960	+
3UTR-3UTR	ENST00000452401	ENST00000225614		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	SPPL2B	chr19	2351592	+	GALK1	chr17	73747818	-
3UTR-intron	ENST00000452401	ENST00000588479		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	SPPL2B	chr19	2351592	+	GALK1	chr17	73747818	-
3UTR-intron	ENST00000452401	ENST00000437911		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	SPPL2B	chr19	2351592	+	GALK1	chr17	73747818	-
Frame-shit	ENST00000261427	ENST00000399820		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
Frame-shit	ENST00000261427	ENST00000288634		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
5CDS-intron	ENST00000261427	ENST00000506503		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
5CDS-intron	ENST00000261427	ENST00000515631		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
intron-3CDS	ENST00000295963	ENST00000399820		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
intron-3CDS	ENST00000295963	ENST00000288634		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
intron-intron	ENST00000295963	ENST00000506503		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
intron-intron	ENST00000295963	ENST00000515631		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
3UTR-3CDS	ENST00000438068	ENST00000399820		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
3UTR-3CDS	ENST00000438068	ENST00000288634		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
3UTR-intron	ENST00000438068	ENST00000506503		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
3UTR-intron	ENST00000438068	ENST00000515631		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
Frame-shit	ENST00000503368	ENST00000399820		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
Frame-shit	ENST00000503368	ENST00000288634		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
5CDS-intron	ENST00000503368	ENST00000506503		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
5CDS-intron	ENST00000503368	ENST00000515631		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
Frame-shit	ENST00000445950	ENST00000399820		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
Frame-shit	ENST00000445950	ENST00000288634		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
5CDS-intron	ENST00000445950	ENST00000506503		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
5CDS-intron	ENST00000445950	ENST00000515631		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	UBE2K	chr4	39757359	+	WDR19	chr4	39245868	+
In-frame	ENST00000360647	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000360647	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000360647	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000360647	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000360647	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000360647	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000468369	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000468369	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000468369	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000468369	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000468369	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000468369	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000484491	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000484491	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000484491	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000484491	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000484491	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000484491	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000544464	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000544464	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000544464	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000544464	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
Frame-shit	ENST00000544464	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000544464	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000492394	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000492394	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000492394	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000492394	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000492394	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000492394	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000485866	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000485866	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000485866	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000485866	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000485866	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5CDS-5UTR	ENST00000485866	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5UTR-3CDS	ENST00000497929	ENST00000360370		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5UTR-3CDS	ENST00000497929	ENST00000346785		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5UTR-3CDS	ENST00000497929	ENST00000383598		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5UTR-3CDS	ENST00000497929	ENST00000315891		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5UTR-3CDS	ENST00000497929	ENST00000508835		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
5UTR-5UTR	ENST00000497929	ENST00000514023		TCGA	LD	UCEC	TCGA-2E-A9G8-01A	ZNF148	chr3	124996570	-	SLC41A3	chr3	125745322	-
In-frame	ENST00000346672	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-5UTR	ENST00000346672	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
In-frame	ENST00000360962	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-5UTR	ENST00000360962	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
In-frame	ENST00000527634	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-5UTR	ENST00000527634	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
In-frame	ENST00000540737	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-5UTR	ENST00000540737	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
In-frame	ENST00000532565	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-5UTR	ENST00000532565	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
In-frame	ENST00000525449	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-5UTR	ENST00000525449	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
intron-3CDS	ENST00000527368	ENST00000378116		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
intron-5UTR	ENST00000527368	ENST00000477161		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf80	chr11	66583670	+	FAM171A1	chr10	15263059	-
5CDS-intron	ENST00000294244	ENST00000394547		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000294244	ENST00000541278		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000294244	ENST00000394546		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000294244	ENST00000546133		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000294244	ENST00000317459		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
5CDS-5UTR	ENST00000294244	ENST00000546089		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
5CDS-intron	ENST00000294244	ENST00000540472		TCGA	LD	UCEC	TCGA-5B-A90C-01A	C11orf84	chr11	63586474	+	TRPT1	chr11	63993341	-
Frame-shit	ENST00000366687	ENST00000344517		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
5CDS-intron	ENST00000366687	ENST00000498158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
Frame-shit	ENST00000284617	ENST00000344517		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
5CDS-intron	ENST00000284617	ENST00000498158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
intron-3CDS	ENST00000366686	ENST00000344517		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
intron-intron	ENST00000366686	ENST00000498158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
5UTR-3CDS	ENST00000483092	ENST00000344517		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
5UTR-intron	ENST00000483092	ENST00000498158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
Frame-shit	ENST00000452552	ENST00000344517		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
5CDS-intron	ENST00000452552	ENST00000498158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	CCSAP	chr1	229477846	-	ABCB10	chr1	229683448	-
In-frame	ENST00000452533	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000452533	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000452533	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000452533	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000452533	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000452533	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000452533	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000452533	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000452533	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000553257	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000553257	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000553257	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000553257	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000553257	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000553257	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000553257	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000553257	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000553257	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000549701	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000549701	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000549701	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000549701	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000549701	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000549701	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000549701	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000549701	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000549701	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000358214	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000358214	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000358214	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000358214	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000358214	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000358214	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000358214	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000358214	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000358214	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548671	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548671	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548671	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548671	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548671	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-3CDS	ENST00000548671	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-intron	ENST00000548671	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-intron	ENST00000548671	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
intron-intron	ENST00000548671	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000266481	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000266481	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000266481	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000266481	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000266481	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000266481	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000266481	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000266481	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000266481	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000547312	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000547312	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000547312	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000547312	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000547312	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000547312	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000547312	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000547312	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000547312	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000414834	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000414834	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000414834	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000414834	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000414834	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000414834	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000414834	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000414834	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000414834	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000381000	ENST00000534526		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000381000	ENST00000531134		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000381000	ENST00000427716		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
Frame-shit	ENST00000381000	ENST00000266482		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000381000	ENST00000546442		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000381000	ENST00000525053		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000381000	ENST00000381025		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000381000	ENST00000472289		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
5CDS-intron	ENST00000381000	ENST00000473513		TCGA	LD	UCEC	TCGA-5B-A90C-01A	DNM1L	chr12	32884877	+	FGD4	chr12	32791589	+
In-frame	ENST00000308317	ENST00000341502		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
In-frame	ENST00000308317	ENST00000341749		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000557038		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000396165		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000396158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000280083		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000556148		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000348007		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000308317	ENST00000553352		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-intron	ENST00000308317	ENST00000553383		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
In-frame	ENST00000396249	ENST00000341502		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
In-frame	ENST00000396249	ENST00000341749		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000557038		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000396165		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000396158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000280083		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000556148		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000348007		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000396249	ENST00000553352		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-intron	ENST00000396249	ENST00000553383		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
In-frame	ENST00000250379	ENST00000341502		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
In-frame	ENST00000250379	ENST00000341749		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000557038		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000396165		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000396158		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000280083		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000556148		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000348007		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000250379	ENST00000553352		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-intron	ENST00000250379	ENST00000553383		TCGA	LD	UCEC	TCGA-5B-A90C-01A	GEMIN2	chr14	39601272	+	CTAGE5	chr14	39746138	+
5CDS-5UTR	ENST00000359595	ENST00000268125		TCGA	LD	UCEC	TCGA-5B-A90C-01A	HAPLN3	chr15	89430406	-	RLBP1	chr15	89762306	-
5CDS-5UTR	ENST00000562889	ENST00000268125		TCGA	LD	UCEC	TCGA-5B-A90C-01A	HAPLN3	chr15	89430406	-	RLBP1	chr15	89762306	-
intron-3CDS	ENST00000171111	ENST00000590923		TCGA	LD	UCEC	TCGA-5B-A90C-01A	KEAP1	chr19	10597424	-	AP1M2	chr19	10690534	-
intron-3CDS	ENST00000171111	ENST00000250244		TCGA	LD	UCEC	TCGA-5B-A90C-01A	KEAP1	chr19	10597424	-	AP1M2	chr19	10690534	-
intron-3CDS	ENST00000393623	ENST00000590923		TCGA	LD	UCEC	TCGA-5B-A90C-01A	KEAP1	chr19	10597424	-	AP1M2	chr19	10690534	-
intron-3CDS	ENST00000393623	ENST00000250244		TCGA	LD	UCEC	TCGA-5B-A90C-01A	KEAP1	chr19	10597424	-	AP1M2	chr19	10690534	-
intron-3CDS	ENST00000588024	ENST00000590923		TCGA	LD	UCEC	TCGA-5B-A90C-01A	KEAP1	chr19	10597424	-	AP1M2	chr19	10690534	-
intron-3CDS	ENST00000588024	ENST00000250244		TCGA	LD	UCEC	TCGA-5B-A90C-01A	KEAP1	chr19	10597424	-	AP1M2	chr19	10690534	-
Frame-shit	ENST00000262305	ENST00000345136		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000357649		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000354589		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000398774		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000322810		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000354958		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000356346		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000436759		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000262305	ENST00000527096		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000345136		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000357649		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000354589		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000398774		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000322810		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000354958		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000356346		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000436759		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000457159	ENST00000527096		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000345136		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000357649		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000354589		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000398774		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000322810		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000354958		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000356346		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000436759		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
Frame-shit	ENST00000450428	ENST00000527096		TCGA	LD	UCEC	TCGA-5B-A90C-01A	RAB11FIP3	chr16	532736	+	PLEC	chr8	145012860	-
In-frame	ENST00000371227	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371227	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371227	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371227	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371249	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371249	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371249	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371249	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000306402	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000306402	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000306402	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000306402	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000353505	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000353505	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000353505	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000353505	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371246	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371246	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371246	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371246	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000347291	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000347291	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000347291	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000347291	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000393949	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000393949	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000393949	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000393949	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371247	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371247	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371247	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371247	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000607232	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000607232	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000607232	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000607232	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371245	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371245	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371245	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371245	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000361941	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000361941	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000361941	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000361941	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000277982	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000277982	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000277982	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000277982	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000354106	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000354106	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000354106	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000354106	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371239	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371239	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371239	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371239	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371241	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
In-frame	ENST00000371241	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
Frame-shit	ENST00000371241	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000371241	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5UTR-3CDS	ENST00000474353	ENST00000371217		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5UTR-3CDS	ENST00000474353	ENST00000265993		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5UTR-3CDS	ENST00000474353	ENST00000430368		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5UTR-intron	ENST00000474353	ENST00000371209		TCGA	LD	UCEC	TCGA-5B-A90C-01A	SORBS1	chr10	97156977	-	TCTN3	chr10	97424057	-
5CDS-intron	ENST00000297323	ENST00000476233		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	ADCY1	chr7	45650096	+	HNRNPA2B1	chr7	26237352	-
5CDS-intron	ENST00000297323	ENST00000354667		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	ADCY1	chr7	45650096	+	HNRNPA2B1	chr7	26237352	-
5CDS-intron	ENST00000297323	ENST00000356674		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	ADCY1	chr7	45650096	+	HNRNPA2B1	chr7	26237352	-
5CDS-intron	ENST00000432715	ENST00000476233		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	ADCY1	chr7	45650096	+	HNRNPA2B1	chr7	26237352	-
5CDS-intron	ENST00000432715	ENST00000354667		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	ADCY1	chr7	45650096	+	HNRNPA2B1	chr7	26237352	-
5CDS-intron	ENST00000432715	ENST00000356674		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	ADCY1	chr7	45650096	+	HNRNPA2B1	chr7	26237352	-
intron-3CDS	ENST00000609084	ENST00000437398		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	CRYBB2P1	chr22	25851807	+	SPECC1L	chr22	24807556	+
intron-3CDS	ENST00000609084	ENST00000314328		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	CRYBB2P1	chr22	25851807	+	SPECC1L	chr22	24807556	+
intron-intron	ENST00000609084	ENST00000541492		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	CRYBB2P1	chr22	25851807	+	SPECC1L	chr22	24807556	+
intron-intron	ENST00000609084	ENST00000416735		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	CRYBB2P1	chr22	25851807	+	SPECC1L	chr22	24807556	+
Frame-shit	ENST00000436008	ENST00000416247		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	SLC22A23	chr6	3456140	-	SMIM13	chr6	11134636	+
Frame-shit	ENST00000406686	ENST00000416247		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	SLC22A23	chr6	3456140	-	SMIM13	chr6	11134636	+
intron-3CDS	ENST00000380302	ENST00000416247		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	SLC22A23	chr6	3456140	-	SMIM13	chr6	11134636	+
intron-3CDS	ENST00000490273	ENST00000416247		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	SLC22A23	chr6	3456140	-	SMIM13	chr6	11134636	+
Frame-shit	ENST00000380298	ENST00000416247		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	SLC22A23	chr6	3456140	-	SMIM13	chr6	11134636	+
intron-3CDS	ENST00000433689	ENST00000416247		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	SLC22A23	chr6	3456140	-	SMIM13	chr6	11134636	+
Frame-shit	ENST00000550746	ENST00000261180		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000550746	ENST00000549138		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
Frame-shit	ENST00000319106	ENST00000261180		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000319106	ENST00000549138		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
Frame-shit	ENST00000485960	ENST00000261180		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000485960	ENST00000549138		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
Frame-shit	ENST00000393309	ENST00000261180		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
5CDS-intron	ENST00000393309	ENST00000549138		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
3UTR-3CDS	ENST00000548679	ENST00000261180		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
3UTR-intron	ENST00000548679	ENST00000549138		TCGA	LD	UCEC	TCGA-A5-A1OH-01A	TBC1D15	chr12	72300918	+	TRHDE	chr12	72680461	+
5CDS-3UTR	ENST00000274849	ENST00000466808		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	ABT1	chr6	26597451	+	BTN2A3P	chr6	26426470	+
intron-intron	ENST00000487394	ENST00000334152		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
intron-intron	ENST00000487394	ENST00000592581		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
intron-intron	ENST00000487394	ENST00000391958		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
intron-intron	ENST00000487394	ENST00000589522		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
5CDS-intron	ENST00000164227	ENST00000334152		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
5CDS-intron	ENST00000164227	ENST00000592581		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
5CDS-intron	ENST00000164227	ENST00000391958		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
5CDS-intron	ENST00000164227	ENST00000589522		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	BCL3	chr19	45260980	+	ZNF233	chr19	44777052	+
Frame-shit	ENST00000397066	ENST00000329610		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	CCNF	chr16	2507017	+	NPW	chr16	2070534	+
Frame-shit	ENST00000397066	ENST00000566435		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	CCNF	chr16	2507017	+	NPW	chr16	2070534	+
5CDS-3UTR	ENST00000262061	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000262061	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000262061	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5UTR-3UTR	ENST00000549043	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5UTR-3UTR	ENST00000549043	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5UTR-3UTR	ENST00000549043	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000552218	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000552218	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000552218	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000553231	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000553231	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000553231	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000552362	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000552362	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000552362	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000455864	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000455864	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000455864	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5UTR-3UTR	ENST00000416254	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5UTR-3UTR	ENST00000416254	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5UTR-3UTR	ENST00000416254	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000549116	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000549116	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000549116	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000551779	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000551779	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
5CDS-3UTR	ENST00000551779	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
intron-3UTR	ENST00000548281	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
intron-3UTR	ENST00000548281	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
intron-3UTR	ENST00000548281	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
intron-3UTR	ENST00000548753	ENST00000504557		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
intron-3UTR	ENST00000548753	ENST00000508190		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
intron-3UTR	ENST00000548753	ENST00000303450		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	COPZ1	chr12	54718965	+	HOXC9	chr12	54396214	+
Frame-shit	ENST00000585892	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000585892	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000314646	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000314646	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000359692	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000359692	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000389253	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000389253	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000355667	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000355667	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000408974	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
Frame-shit	ENST00000408974	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
intron-3CDS	ENST00000591819	ENST00000592854		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
intron-3CDS	ENST00000591819	ENST00000397820		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	DNM2	chr19	10829079	+	C19orf38	chr19	10966941	+
intron-3CDS	ENST00000458477	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
Frame-shit	ENST00000228307	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
Frame-shit	ENST00000424649	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
intron-3CDS	ENST00000397506	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
intron-3CDS	ENST00000536957	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
Frame-shit	ENST00000267257	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
intron-3CDS	ENST00000538144	ENST00000551765		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	PXN	chr12	120703420	-	GATC	chr12	120894879	+
intron-3CDS	ENST00000325874	ENST00000331134		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000325874	ENST00000374747		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000325874	ENST00000539314		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-intron	ENST00000325874	ENST00000572760		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-intron	ENST00000325874	ENST00000573876		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-intron	ENST00000325874	ENST00000574344		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000581280	ENST00000331134		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000581280	ENST00000374747		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-3CDS	ENST00000581280	ENST00000539314		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-intron	ENST00000581280	ENST00000572760		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-intron	ENST00000581280	ENST00000573876		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
intron-intron	ENST00000581280	ENST00000574344		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
In-frame	ENST00000394744	ENST00000331134		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
In-frame	ENST00000394744	ENST00000374747		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
In-frame	ENST00000394744	ENST00000539314		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000394744	ENST00000572760		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000394744	ENST00000573876		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000394744	ENST00000574344		TCGA	LD	UCEC	TCGA-A5-A2K2-01A	RAB11FIP4	chr17	29815290	+	NPLOC4	chr17	79539114	-
5CDS-intron	ENST00000280886	ENST00000326765		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	DIP2C	chr10	735434	-	APOLD1	chr12	12965195	+
5CDS-intron	ENST00000280886	ENST00000356591		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	DIP2C	chr10	735434	-	APOLD1	chr12	12965195	+
intron-intron	ENST00000381496	ENST00000326765		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	DIP2C	chr10	735434	-	APOLD1	chr12	12965195	+
intron-intron	ENST00000381496	ENST00000356591		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	DIP2C	chr10	735434	-	APOLD1	chr12	12965195	+
intron-intron	ENST00000540204	ENST00000326765		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	DIP2C	chr10	735434	-	APOLD1	chr12	12965195	+
intron-intron	ENST00000540204	ENST00000356591		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	DIP2C	chr10	735434	-	APOLD1	chr12	12965195	+
5UTR-3CDS	ENST00000354618	ENST00000171111		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
5UTR-3CDS	ENST00000354618	ENST00000393623		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
5UTR-5UTR	ENST00000354618	ENST00000588024		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
5UTR-3CDS	ENST00000469141	ENST00000171111		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
5UTR-3CDS	ENST00000469141	ENST00000393623		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
5UTR-5UTR	ENST00000469141	ENST00000588024		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
intron-3CDS	ENST00000466743	ENST00000171111		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
intron-3CDS	ENST00000466743	ENST00000393623		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
intron-5UTR	ENST00000466743	ENST00000588024		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	THRAP3	chr1	36690106	+	KEAP1	chr19	10602938	-
5UTR-3CDS	ENST00000399537	ENST00000425013		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
5UTR-3CDS	ENST00000399537	ENST00000389902		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
5UTR-5UTR	ENST00000399537	ENST00000469375		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
5UTR-3CDS	ENST00000430969	ENST00000425013		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
5UTR-3CDS	ENST00000430969	ENST00000389902		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
5UTR-5UTR	ENST00000430969	ENST00000469375		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000425013		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
intron-3CDS	ENST00000399434	ENST00000389902		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
intron-5UTR	ENST00000399434	ENST00000469375		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TNRC18	chr7	5463072	-	RNF216	chr7	5681007	-
In-frame	ENST00000334379	ENST00000368357		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000334379	ENST00000392477		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000334379	ENST00000229634		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
5CDS-intron	ENST00000334379	ENST00000487635		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000368332	ENST00000368357		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000368332	ENST00000392477		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000368332	ENST00000229634		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
5CDS-intron	ENST00000368332	ENST00000487635		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000450358	ENST00000368357		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000450358	ENST00000392477		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
In-frame	ENST00000450358	ENST00000229634		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
5CDS-intron	ENST00000450358	ENST00000487635		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
intron-3CDS	ENST00000489934	ENST00000368357		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
intron-3CDS	ENST00000489934	ENST00000392477		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
intron-3CDS	ENST00000489934	ENST00000229634		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
intron-intron	ENST00000489934	ENST00000487635		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	TRMT11	chr6	126307768	+	NCOA7	chr6	126249320	+
5CDS-5UTR	ENST00000211998	ENST00000542569		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000211998	ENST00000372687		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000211998	ENST00000372690		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000372755	ENST00000542569		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000372755	ENST00000372687		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000372755	ENST00000372690		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
intron-5UTR	ENST00000478896	ENST00000542569		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
intron-5UTR	ENST00000478896	ENST00000372687		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
intron-5UTR	ENST00000478896	ENST00000372690		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000417648	ENST00000542569		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000417648	ENST00000372687		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
5CDS-5UTR	ENST00000417648	ENST00000372690		TCGA	LD	UCEC	TCGA-A5-A2K4-01A	VCL	chr10	75868914	+	SAMD8	chr10	76910272	+
intron-5UTR	ENST00000441031	ENST00000471694		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000441031	ENST00000355354		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000441031	ENST00000361309		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000416588	ENST00000471694		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000416588	ENST00000355354		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000416588	ENST00000361309		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000478815	ENST00000471694		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000478815	ENST00000355354		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000478815	ENST00000361309		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000297894	ENST00000471694		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000297894	ENST00000355354		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
intron-5UTR	ENST00000297894	ENST00000361309		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
5UTR-5UTR	ENST00000478493	ENST00000471694		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
5UTR-5UTR	ENST00000478493	ENST00000355354		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
5UTR-5UTR	ENST00000478493	ENST00000361309		TCGA	LD	UCEC	TCGA-A5-A2K5-01A	RNF183	chr9	116064475	-	CD47	chr3	107766139	-
Frame-shit	ENST00000421419	ENST00000406310		TCGA	LD	UCEC	TCGA-A5-A3LP-01A	ATG2A	chr11	64667966	-	ESRRA	chr11	64081423	+
Frame-shit	ENST00000421419	ENST00000000442		TCGA	LD	UCEC	TCGA-A5-A3LP-01A	ATG2A	chr11	64667966	-	ESRRA	chr11	64081423	+
Frame-shit	ENST00000421419	ENST00000405666		TCGA	LD	UCEC	TCGA-A5-A3LP-01A	ATG2A	chr11	64667966	-	ESRRA	chr11	64081423	+
Frame-shit	ENST00000377264	ENST00000406310		TCGA	LD	UCEC	TCGA-A5-A3LP-01A	ATG2A	chr11	64667966	-	ESRRA	chr11	64081423	+
Frame-shit	ENST00000377264	ENST00000000442		TCGA	LD	UCEC	TCGA-A5-A3LP-01A	ATG2A	chr11	64667966	-	ESRRA	chr11	64081423	+
Frame-shit	ENST00000377264	ENST00000405666		TCGA	LD	UCEC	TCGA-A5-A3LP-01A	ATG2A	chr11	64667966	-	ESRRA	chr11	64081423	+
5CDS-5UTR	ENST00000545170	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000545170	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000545170	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000545170	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000545170	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000429774	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000429774	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000429774	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000429774	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000429774	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000393287	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000393287	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000393287	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000393287	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000393287	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000502250	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000502250	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000502250	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000502250	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000502250	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000503767	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000503767	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000503767	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000503767	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000503767	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000340660	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000340660	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000340660	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000340660	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000340660	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
intron-5UTR	ENST00000532032	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
intron-5UTR	ENST00000532032	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
intron-5UTR	ENST00000532032	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
intron-5UTR	ENST00000532032	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
intron-intron	ENST00000532032	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000554491	ENST00000555699		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000554491	ENST00000334869		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000554491	ENST00000557434		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-5UTR	ENST00000554491	ENST00000393218		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
5CDS-intron	ENST00000554491	ENST00000557034		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ATXN3	chr14	92537279	-	LGMN	chr14	93199160	-
intron-3CDS	ENST00000377022	ENST00000361445		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-intron	ENST00000377022	ENST00000376838		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-intron	ENST00000377022	ENST00000495435		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-3CDS	ENST00000344008	ENST00000361445		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-intron	ENST00000344008	ENST00000376838		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-intron	ENST00000344008	ENST00000495435		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-3CDS	ENST00000478728	ENST00000361445		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-intron	ENST00000478728	ENST00000376838		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
intron-intron	ENST00000478728	ENST00000495435		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CASZ1	chr1	10698772	-	MTOR	chr1	11259760	-
5UTR-5UTR	ENST00000260327	ENST00000434505		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
5UTR-intron	ENST00000260327	ENST00000413453		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
5UTR-intron	ENST00000260327	ENST00000483604		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
5UTR-5UTR	ENST00000396780	ENST00000434505		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
5UTR-intron	ENST00000396780	ENST00000413453		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
5UTR-intron	ENST00000396780	ENST00000483604		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-5UTR	ENST00000558966	ENST00000434505		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-intron	ENST00000558966	ENST00000413453		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-intron	ENST00000558966	ENST00000483604		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-5UTR	ENST00000558373	ENST00000434505		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-intron	ENST00000558373	ENST00000413453		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-intron	ENST00000558373	ENST00000483604		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-5UTR	ENST00000561189	ENST00000434505		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-intron	ENST00000561189	ENST00000413453		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
intron-intron	ENST00000561189	ENST00000483604		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	CTDSPL2	chr15	44719970	+	CKMT1A	chr15	43985112	+
Frame-shit	ENST00000376177	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000376177	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000376177	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000376177	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000376177	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000376177	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000376177	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000396172	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000396172	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000396172	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000396172	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000396172	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000396172	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000396172	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000417556	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000417556	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000417556	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000417556	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000417556	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000417556	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000417556	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
In-frame	ENST00000458640	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
In-frame	ENST00000458640	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
In-frame	ENST00000458640	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
In-frame	ENST00000458640	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
In-frame	ENST00000458640	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
In-frame	ENST00000458640	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000458640	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000462421	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000462421	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000462421	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000462421	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000462421	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000462421	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000462421	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415382	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415382	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415382	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415382	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415382	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415382	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415382	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000453105	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000453105	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000453105	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000453105	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000453105	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
Frame-shit	ENST00000453105	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
5CDS-intron	ENST00000453105	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-3CDS	ENST00000449074	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-3CDS	ENST00000449074	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-3CDS	ENST00000449074	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-3CDS	ENST00000449074	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-3CDS	ENST00000449074	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-3CDS	ENST00000449074	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
3UTR-intron	ENST00000449074	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552820	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552820	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552820	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552820	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552820	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552820	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552820	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000463430	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000463430	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000463430	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000463430	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000463430	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000463430	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000463430	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000438578	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000438578	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000438578	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000438578	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000438578	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000438578	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000438578	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415689	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415689	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415689	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415689	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415689	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000415689	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000415689	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456476	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456476	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456476	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456476	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456476	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456476	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456476	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412106	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412106	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412106	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412106	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412106	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412106	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412106	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547039	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547039	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547039	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547039	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547039	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547039	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547039	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550435	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550435	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550435	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550435	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550435	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550435	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550435	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453488	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453488	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453488	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453488	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453488	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453488	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453488	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453138	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453138	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453138	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453138	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453138	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000453138	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000453138	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552288	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552288	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552288	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552288	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552288	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000552288	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000552288	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000441425	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000441425	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000441425	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000441425	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000441425	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000441425	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000441425	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456666	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456666	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456666	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456666	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456666	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000456666	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000456666	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546633	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546633	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546633	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546633	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546633	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546633	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546633	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000483957	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000483957	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000483957	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000483957	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000483957	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000483957	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000483957	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430703	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430703	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430703	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430703	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430703	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430703	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430703	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000416863	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000416863	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000416863	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000416863	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000416863	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000416863	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000416863	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000413678	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000413678	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000413678	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000413678	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000413678	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000413678	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000413678	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000414440	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000414440	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000414440	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000414440	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000414440	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000414440	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000414440	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547489	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547489	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547489	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547489	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547489	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000547489	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000547489	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000551031	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000551031	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000551031	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000551031	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000551031	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000551031	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000551031	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000468089	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000468089	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000468089	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000468089	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000468089	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000468089	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000468089	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400293	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400293	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400293	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400293	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400293	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400293	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400293	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400296	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400296	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400296	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400296	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400296	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400296	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400296	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400295	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400295	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400295	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400295	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400295	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000400295	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000400295	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000383508	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000383508	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000383508	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000383508	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000383508	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000383508	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000383508	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548340	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548340	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548340	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548340	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548340	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548340	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548340	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548331	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548331	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548331	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548331	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548331	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548331	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548331	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000495391	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000495391	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000495391	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000495391	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000495391	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000495391	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000495391	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000446341	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000446341	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000446341	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000446341	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000446341	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000446341	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000446341	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548614	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548614	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548614	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548614	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548614	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000548614	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000548614	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000448296	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000448296	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000448296	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000448296	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000448296	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000448296	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000448296	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412330	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412330	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412330	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412330	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412330	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000412330	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000412330	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000445218	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000445218	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000445218	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000445218	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000445218	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000445218	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000445218	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546637	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546637	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546637	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546637	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546637	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000546637	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000546637	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000489325	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000489325	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000489325	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000489325	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000489325	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000489325	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000489325	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000450987	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000450987	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000450987	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000450987	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000450987	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000450987	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000450987	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000431360	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000431360	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000431360	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000431360	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000431360	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000431360	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000431360	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430784	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430784	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430784	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430784	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430784	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000430784	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000430784	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550217	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550217	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550217	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550217	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550217	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000550217	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000550217	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000470514	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000470514	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000470514	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000470514	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000470514	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000470514	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000470514	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000549374	ENST00000442822		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000549374	ENST00000447241		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000549374	ENST00000375015		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000549374	ENST00000533191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000549374	ENST00000527965		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000549374	ENST00000375007		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000425722		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000449847		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000427082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000438312		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000424621		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000413045		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000399749		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000383262		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000383130		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000448986		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000547550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000548975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000548927		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000457429		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-intron	ENST00000549374	ENST00000451857		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DDX39B	chr6	31506540	-	C6orf10	chr6	32337760	-
intron-3CDS	ENST00000373913	ENST00000425933		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373913	ENST00000543599		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373913	ENST00000329082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373913	ENST00000542321		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000538818		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000557301		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-intron	ENST00000373913	ENST00000557420		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000556658		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000556087		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373913	ENST00000555584		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000425933		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000543599		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000329082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000401952	ENST00000542321		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000538818		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000557301		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-intron	ENST00000401952	ENST00000557420		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000556658		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000556087		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000401952	ENST00000555584		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000425933		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000543599		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000329082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000373907	ENST00000542321		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000538818		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000557301		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-intron	ENST00000373907	ENST00000557420		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000556658		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000556087		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000373907	ENST00000555584		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000425933		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000543599		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000329082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000339266	ENST00000542321		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000538818		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000557301		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-intron	ENST00000339266	ENST00000557420		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000556658		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000556087		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000339266	ENST00000555584		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-3CDS	ENST00000475894	ENST00000425933		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-3CDS	ENST00000475894	ENST00000543599		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-3CDS	ENST00000475894	ENST00000329082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-3CDS	ENST00000475894	ENST00000542321		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-5UTR	ENST00000475894	ENST00000538818		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-5UTR	ENST00000475894	ENST00000557301		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-intron	ENST00000475894	ENST00000557420		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-5UTR	ENST00000475894	ENST00000556658		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-5UTR	ENST00000475894	ENST00000556087		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
3UTR-5UTR	ENST00000475894	ENST00000555584		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000340491	ENST00000425933		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000340491	ENST00000543599		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000340491	ENST00000329082		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-3CDS	ENST00000340491	ENST00000542321		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000340491	ENST00000538818		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000340491	ENST00000557301		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-intron	ENST00000340491	ENST00000557420		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000340491	ENST00000556658		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000340491	ENST00000556087		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
intron-5UTR	ENST00000340491	ENST00000555584		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DLGAP4	chr20	35089913	+	RGMA	chr15	93595737	-
In-frame	ENST00000452533	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000452533	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000452533	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000452533	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000452533	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000452533	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000452533	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000452533	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000452533	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000553257	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000553257	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000553257	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000549701	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000549701	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000549701	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000358214	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000358214	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000358214	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-3CDS	ENST00000548671	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-intron	ENST00000548671	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
intron-intron	ENST00000548671	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000266481	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000266481	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000266481	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000547312	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000547312	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000547312	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000414834	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000414834	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000414834	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000534526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000531134		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000427716		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000266482		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000546442		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000525053		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000381000	ENST00000381025		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000381000	ENST00000472289		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
5CDS-intron	ENST00000381000	ENST00000473513		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	DNM1L	chr12	32886741	+	FGD4	chr12	32772632	+
In-frame	ENST00000373095	ENST00000372715		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FAM102A	chr9	130742271	-	WDR34	chr9	131403218	-
5CDS-intron	ENST00000373095	ENST00000483181		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FAM102A	chr9	130742271	-	WDR34	chr9	131403218	-
intron-3CDS	ENST00000373084	ENST00000372715		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FAM102A	chr9	130742271	-	WDR34	chr9	131403218	-
intron-intron	ENST00000373084	ENST00000483181		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FAM102A	chr9	130742271	-	WDR34	chr9	131403218	-
intron-3CDS	ENST00000300434	ENST00000372715		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FAM102A	chr9	130742271	-	WDR34	chr9	131403218	-
intron-intron	ENST00000300434	ENST00000483181		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FAM102A	chr9	130742271	-	WDR34	chr9	131403218	-
intron-3UTR	ENST00000375771	ENST00000494280		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000375771	ENST00000375910		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000375766	ENST00000494280		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000375766	ENST00000375910		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000400773	ENST00000494280		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000400773	ENST00000375910		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000441801	ENST00000494280		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000441801	ENST00000375910		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000332305	ENST00000494280		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000332305	ENST00000375910		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000509138	ENST00000494280		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
intron-3UTR	ENST00000509138	ENST00000375910		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBLIM1	chr1	16084850	+	CELA2B	chr1	15802952	+
Frame-shit	ENST00000382368	ENST00000425013		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBXL18	chr7	5540119	-	RNF216	chr7	5692141	-
Frame-shit	ENST00000382368	ENST00000389902		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBXL18	chr7	5540119	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000382368	ENST00000469375		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBXL18	chr7	5540119	-	RNF216	chr7	5692141	-
Frame-shit	ENST00000453700	ENST00000425013		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBXL18	chr7	5540119	-	RNF216	chr7	5692141	-
Frame-shit	ENST00000453700	ENST00000389902		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBXL18	chr7	5540119	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000453700	ENST00000469375		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	FBXL18	chr7	5540119	-	RNF216	chr7	5692141	-
5CDS-intron	ENST00000316156	ENST00000324350		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000316156	ENST00000373191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000316156	ENST00000397828		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000316156	ENST00000246314		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000316156	ENST00000471099		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373150	ENST00000324350		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373150	ENST00000373191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373150	ENST00000397828		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000373150	ENST00000246314		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373150	ENST00000471099		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373151	ENST00000324350		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373151	ENST00000373191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373151	ENST00000397828		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-5UTR	ENST00000373151	ENST00000246314		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
5CDS-intron	ENST00000373151	ENST00000471099		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
3UTR-intron	ENST00000474796	ENST00000324350		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
3UTR-intron	ENST00000474796	ENST00000373191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
3UTR-intron	ENST00000474796	ENST00000397828		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
3UTR-5UTR	ENST00000474796	ENST00000246314		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
3UTR-intron	ENST00000474796	ENST00000471099		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
intron-intron	ENST00000373148	ENST00000324350		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
intron-intron	ENST00000373148	ENST00000373191		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
intron-intron	ENST00000373148	ENST00000397828		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
intron-5UTR	ENST00000373148	ENST00000246314		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
intron-intron	ENST00000373148	ENST00000471099		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MAP7D1	chr1	36639079	+	AGO3	chr1	36469942	+
intron-3CDS	ENST00000264674	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000264674	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000264674	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000264674	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000392736	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000392736	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000392736	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000392736	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000464456	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000464456	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000464456	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000464456	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000472280	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000472280	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000472280	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000472280	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000494292	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000494292	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
Frame-shit	ENST00000494292	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
5CDS-3UTR	ENST00000494292	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000468789	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000468789	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000468789	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000468789	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000460814	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000460814	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000460814	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000460814	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000433243	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000433243	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000433243	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3UTR	ENST00000433243	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
5UTR-3CDS	ENST00000485957	ENST00000486975		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
5UTR-3CDS	ENST00000485957	ENST00000451576		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
5UTR-3CDS	ENST00000485957	ENST00000064724		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
5UTR-3UTR	ENST00000485957	ENST00000489485		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	MECOM	chr3	169381124	-	CLDN11	chr3	170140951	+
intron-3CDS	ENST00000338882	ENST00000368919		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000338882	ENST00000330550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000338882	ENST00000439654		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000338882	ENST00000456137		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-5UTR	ENST00000338882	ENST00000461487		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000368919		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000330550		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000439654		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-3CDS	ENST00000490043	ENST00000456137		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
intron-5UTR	ENST00000490043	ENST00000461487		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	METTL24	chr6	110567335	-	SLC22A16	chr6	110778220	-
Frame-shit	ENST00000423118	ENST00000563630		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
Frame-shit	ENST00000423118	ENST00000431526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
Frame-shit	ENST00000423118	ENST00000562103		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
Frame-shit	ENST00000262304	ENST00000563630		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
Frame-shit	ENST00000262304	ENST00000431526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
Frame-shit	ENST00000262304	ENST00000562103		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
intron-3CDS	ENST00000561991	ENST00000563630		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
intron-3CDS	ENST00000561991	ENST00000431526		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
intron-3CDS	ENST00000561991	ENST00000562103		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PKD1	chr16	2185476	-	ZNF598	chr16	2049122	-
5CDS-3UTR	ENST00000405995	ENST00000592432		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000405995	ENST00000592014		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000405995	ENST00000586148		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000357304	ENST00000592432		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000357304	ENST00000592014		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000357304	ENST00000586148		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000458550	ENST00000592432		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000458550	ENST00000592014		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5CDS-3UTR	ENST00000458550	ENST00000586148		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5UTR-3UTR	ENST00000372249	ENST00000592432		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5UTR-3UTR	ENST00000372249	ENST00000592014		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
5UTR-3UTR	ENST00000372249	ENST00000586148		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
intron-3UTR	ENST00000465931	ENST00000592432		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
intron-3UTR	ENST00000465931	ENST00000592014		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
intron-3UTR	ENST00000465931	ENST00000586148		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	PRRC2B	chr9	134358832	+	PRCD	chr17	74536587	+
intron-3CDS	ENST00000393167	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000393167	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000409842	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000409842	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000393165	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000393165	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000393166	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000393166	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000409875	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000409875	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000376439	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000376439	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000478880	ENST00000376489		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
intron-3CDS	ENST00000478880	ENST00000259205		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RABL2A	chr2	114390637	+	IL36G	chr2	113742417	+
5CDS-5UTR	ENST00000254066	ENST00000272203		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000254066	ENST00000414478		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000254066	ENST00000485632		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000394089	ENST00000272203		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000394089	ENST00000414478		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000394089	ENST00000485632		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000425707	ENST00000272203		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000425707	ENST00000414478		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-intron	ENST00000425707	ENST00000485632		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000394086	ENST00000272203		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000394086	ENST00000414478		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-intron	ENST00000394086	ENST00000485632		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000394081	ENST00000272203		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000394081	ENST00000414478		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-intron	ENST00000394081	ENST00000485632		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000420042	ENST00000272203		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-5UTR	ENST00000420042	ENST00000414478		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
intron-intron	ENST00000420042	ENST00000485632		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	RARA	chr17	38487648	+	PLEKHA6	chr1	204243937	-
5CDS-5UTR	ENST00000287218	ENST00000342129		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-5UTR	ENST00000287218	ENST00000340951		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-intron	ENST00000287218	ENST00000479452		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-intron	ENST00000287218	ENST00000475006		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-intron	ENST00000287218	ENST00000465160		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-5UTR	ENST00000373391	ENST00000342129		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-5UTR	ENST00000373391	ENST00000340951		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-intron	ENST00000373391	ENST00000479452		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-intron	ENST00000373391	ENST00000475006		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
5CDS-intron	ENST00000373391	ENST00000465160		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
intron-5UTR	ENST00000463847	ENST00000342129		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
intron-5UTR	ENST00000463847	ENST00000340951		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
intron-intron	ENST00000463847	ENST00000479452		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
intron-intron	ENST00000463847	ENST00000475006		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
intron-intron	ENST00000463847	ENST00000465160		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFAND3	chr6	37897775	+	EXD3	chr9	140248829	-
intron-5UTR	ENST00000570884	ENST00000219169		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000570884	ENST00000569436		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000570884	ENST00000568396		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000570495	ENST00000219169		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000570495	ENST00000569436		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000570495	ENST00000568396		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000563169	ENST00000219169		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000563169	ENST00000569436		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000563169	ENST00000568396		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000564323	ENST00000219169		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000564323	ENST00000569436		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
5UTR-5UTR	ENST00000564323	ENST00000568396		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000398253	ENST00000219169		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000398253	ENST00000569436		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
intron-5UTR	ENST00000398253	ENST00000568396		TCGA	LD	UCEC	TCGA-A5-A7WK-01A	ZFP90	chr16	68573372	+	NUTF2	chr16	67899005	+
Frame-shit	ENST00000409381	ENST00000258484		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	LYPD6	chr2	150305661	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000409381	ENST00000409654		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	LYPD6	chr2	150305661	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000334166	ENST00000258484		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	LYPD6	chr2	150305661	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000334166	ENST00000409654		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	LYPD6	chr2	150305661	+	EPC2	chr2	149447783	+
In-frame	ENST00000351111	ENST00000336915		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	MRPL10	chr17	45904003	-	SKAP1	chr17	46266862	-
In-frame	ENST00000351111	ENST00000584924		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	MRPL10	chr17	45904003	-	SKAP1	chr17	46266862	-
In-frame	ENST00000290208	ENST00000336915		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	MRPL10	chr17	45904003	-	SKAP1	chr17	46266862	-
In-frame	ENST00000290208	ENST00000584924		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	MRPL10	chr17	45904003	-	SKAP1	chr17	46266862	-
In-frame	ENST00000414011	ENST00000336915		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	MRPL10	chr17	45904003	-	SKAP1	chr17	46266862	-
In-frame	ENST00000414011	ENST00000584924		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	MRPL10	chr17	45904003	-	SKAP1	chr17	46266862	-
Frame-shit	ENST00000329542	ENST00000393784		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
5CDS-intron	ENST00000329542	ENST00000519860		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
5CDS-intron	ENST00000329542	ENST00000523291		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
5CDS-intron	ENST00000329542	ENST00000326654		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
intron-3CDS	ENST00000261961	ENST00000393784		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
intron-intron	ENST00000261961	ENST00000519860		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
intron-intron	ENST00000261961	ENST00000523291		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
intron-intron	ENST00000261961	ENST00000326654		TCGA	LD	UCEC	TCGA-AJ-A23N-01A	UNC5A	chr5	176237821	+	ERGIC1	chr5	172377712	+
In-frame	ENST00000306730	ENST00000413748		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
In-frame	ENST00000306730	ENST00000300175		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
In-frame	ENST00000306730	ENST00000494364		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
In-frame	ENST00000306730	ENST00000497208		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
5CDS-3UTR	ENST00000306730	ENST00000498069		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000558136	ENST00000413748		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000558136	ENST00000300175		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000558136	ENST00000494364		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
intron-3CDS	ENST00000558136	ENST00000497208		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
intron-3UTR	ENST00000558136	ENST00000498069		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	AVEN	chr15	34295233	-	SCG5	chr15	32971967	+
5UTR-5UTR	ENST00000273009	ENST00000401998		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000273009	ENST00000361114		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000273009	ENST00000398761		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000273009	ENST00000418483		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000273009	ENST00000398763		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000273009	ENST00000604025		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000360410	ENST00000401998		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000360410	ENST00000361114		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000360410	ENST00000398761		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000360410	ENST00000418483		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000360410	ENST00000398763		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000360410	ENST00000604025		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000325385	ENST00000401998		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000325385	ENST00000361114		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000325385	ENST00000398761		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000325385	ENST00000418483		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000325385	ENST00000398763		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000325385	ENST00000604025		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000409401	ENST00000401998		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000409401	ENST00000361114		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000409401	ENST00000398761		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000409401	ENST00000418483		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-intron	ENST00000409401	ENST00000398763		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5UTR-5UTR	ENST00000409401	ENST00000604025		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000409307	ENST00000401998		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000409307	ENST00000361114		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000409307	ENST00000398761		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-intron	ENST00000409307	ENST00000418483		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-intron	ENST00000409307	ENST00000398763		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000409307	ENST00000604025		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000470087	ENST00000401998		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000470087	ENST00000361114		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000470087	ENST00000398761		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-intron	ENST00000470087	ENST00000418483		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-intron	ENST00000470087	ENST00000398763		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
intron-5UTR	ENST00000470087	ENST00000604025		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	DIS3L2	chr2	232826475	+	MICU1	chr10	74326552	-
5CDS-5UTR	ENST00000291481	ENST00000409224		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	HAPLN4	chr19	19371622	-	MEF2B	chr19	19261573	-
5CDS-5UTR	ENST00000291481	ENST00000424583		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	HAPLN4	chr19	19371622	-	MEF2B	chr19	19261573	-
5CDS-5UTR	ENST00000291481	ENST00000410050		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	HAPLN4	chr19	19371622	-	MEF2B	chr19	19261573	-
5CDS-5UTR	ENST00000291481	ENST00000602424		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	HAPLN4	chr19	19371622	-	MEF2B	chr19	19261573	-
5CDS-5UTR	ENST00000291481	ENST00000409447		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	HAPLN4	chr19	19371622	-	MEF2B	chr19	19261573	-
5CDS-5UTR	ENST00000291481	ENST00000162023		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	HAPLN4	chr19	19371622	-	MEF2B	chr19	19261573	-
intron-intron	ENST00000382582	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000382582	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000382582	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000382582	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000382582	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000355994	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000355994	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000355994	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000355994	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000355994	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397875	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397875	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397875	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397875	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397875	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397866	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397866	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397866	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397866	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397866	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397865	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397865	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397865	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397865	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397865	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000527041	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000527041	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000527041	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000527041	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000527041	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000359645	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000359645	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000359645	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000359645	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000359645	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000528160	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000528160	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000528160	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000528160	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000528160	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397869	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397869	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397869	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397869	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000397869	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000354542	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000354542	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000354542	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000354542	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000354542	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000526111	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000526111	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000526111	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000526111	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000526111	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000580402	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000580402	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000580402	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000580402	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000580402	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000579129	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000579129	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000579129	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000579129	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000579129	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000578193	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000578193	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000578193	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000578193	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
intron-intron	ENST00000578193	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397863	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397863	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397863	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397863	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397863	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397860	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397860	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397860	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397860	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5CDS-intron	ENST00000397860	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5UTR-intron	ENST00000487778	ENST00000581073		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5UTR-intron	ENST00000487778	ENST00000585159		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5UTR-intron	ENST00000487778	ENST00000269503		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5UTR-intron	ENST00000487778	ENST00000584764		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
5UTR-intron	ENST00000487778	ENST00000583651		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	MBP	chr18	74817167	-	CBLN2	chr18	70219871	-
In-frame	ENST00000306735	ENST00000269601		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000306735	ENST00000585474		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-intron	ENST00000306735	ENST00000588162		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000306735	ENST00000592957		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000306735	ENST00000592837		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000306735	ENST00000591711		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-intron	ENST00000306735	ENST00000589926		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
Frame-shit	ENST00000586847	ENST00000269601		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000586847	ENST00000585474		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-intron	ENST00000586847	ENST00000588162		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000586847	ENST00000592957		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000586847	ENST00000592837		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000586847	ENST00000591711		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-intron	ENST00000586847	ENST00000589926		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
In-frame	ENST00000262197	ENST00000269601		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000262197	ENST00000585474		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-intron	ENST00000262197	ENST00000588162		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000262197	ENST00000592957		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000262197	ENST00000592837		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-5UTR	ENST00000262197	ENST00000591711		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
5CDS-intron	ENST00000262197	ENST00000589926		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	RBFA	chr18	77797506	+	TXNL4A	chr18	77737701	-
Frame-shit	ENST00000301634	ENST00000301067		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
5CDS-intron	ENST00000301634	ENST00000549743		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
Frame-shit	ENST00000405273	ENST00000301067		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
5CDS-intron	ENST00000405273	ENST00000549743		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
Frame-shit	ENST00000588734	ENST00000301067		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
5CDS-intron	ENST00000588734	ENST00000549743		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
Frame-shit	ENST00000590862	ENST00000301067		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
5CDS-intron	ENST00000590862	ENST00000549743		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
intron-3CDS	ENST00000590430	ENST00000301067		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
intron-intron	ENST00000590430	ENST00000549743		TCGA	LD	UCEC	TCGA-AJ-A2QM-01A	TK1	chr17	76178670	-	KMT2D	chr12	49428082	-
intron-3CDS	ENST00000267103	ENST00000257934		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-3CDS	ENST00000267103	ENST00000552462		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-intron	ENST00000267103	ENST00000550026		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-3CDS	ENST00000548632	ENST00000257934		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-3CDS	ENST00000548632	ENST00000552462		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-intron	ENST00000548632	ENST00000550026		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-3CDS	ENST00000549488	ENST00000257934		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-3CDS	ENST00000549488	ENST00000552462		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
intron-intron	ENST00000549488	ENST00000550026		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	C12orf10	chr12	53695509	+	ESPL1	chr12	53686725	+
Frame-shit	ENST00000359786	ENST00000338859		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000359786	ENST00000389313		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000438665	ENST00000338859		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000438665	ENST00000389313		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000575158	ENST00000338859		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
In-frame	ENST00000575158	ENST00000389313		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000361007	ENST00000338859		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000361007	ENST00000389313		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000545534	ENST00000338859		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000545534	ENST00000389313		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
intron-3CDS	ENST00000573198	ENST00000338859		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
intron-3CDS	ENST00000573198	ENST00000389313		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	MYO1C	chr17	1381910	-	SMTNL2	chr17	4510656	+
Frame-shit	ENST00000541529	ENST00000294435		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	PGD	chr1	10460629	+	RBP7	chr1	10067628	+
Frame-shit	ENST00000270776	ENST00000294435		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	PGD	chr1	10460629	+	RBP7	chr1	10067628	+
Frame-shit	ENST00000538557	ENST00000294435		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	PGD	chr1	10460629	+	RBP7	chr1	10067628	+
intron-3CDS	ENST00000498356	ENST00000294435		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	PGD	chr1	10460629	+	RBP7	chr1	10067628	+
In-frame	ENST00000215793	ENST00000354694		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
Frame-shit	ENST00000215793	ENST00000402281		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
In-frame	ENST00000215793	ENST00000405677		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
In-frame	ENST00000215793	ENST00000402284		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
Frame-shit	ENST00000215793	ENST00000335214		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
5CDS-intron	ENST00000215793	ENST00000492986		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
In-frame	ENST00000439242	ENST00000354694		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
Frame-shit	ENST00000439242	ENST00000402281		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
In-frame	ENST00000439242	ENST00000405677		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
In-frame	ENST00000439242	ENST00000402284		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
Frame-shit	ENST00000439242	ENST00000335214		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
5CDS-intron	ENST00000439242	ENST00000492986		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	SF3A1	chr22	30733015	-	PES1	chr22	30973116	-
5UTR-3CDS	ENST00000310924	ENST00000269349		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	TBC1D16	chr17	78009594	-	EIF4A3	chr17	78113939	-
intron-3CDS	ENST00000576768	ENST00000269349		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	TBC1D16	chr17	78009594	-	EIF4A3	chr17	78113939	-
intron-3CDS	ENST00000340848	ENST00000269349		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	TBC1D16	chr17	78009594	-	EIF4A3	chr17	78113939	-
intron-3CDS	ENST00000572862	ENST00000269349		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	TBC1D16	chr17	78009594	-	EIF4A3	chr17	78113939	-
intron-3CDS	ENST00000570373	ENST00000269349		TCGA	LD	UCEC	TCGA-AJ-A3BD-01A	TBC1D16	chr17	78009594	-	EIF4A3	chr17	78113939	-
5CDS-intron	ENST00000372842	ENST00000373302		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
5CDS-intron	ENST00000372842	ENST00000373299		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
5CDS-3UTR	ENST00000372842	ENST00000481942		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
5CDS-intron	ENST00000372838	ENST00000373302		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
5CDS-intron	ENST00000372838	ENST00000373299		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
5CDS-3UTR	ENST00000372838	ENST00000481942		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
intron-intron	ENST00000493788	ENST00000373302		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
intron-intron	ENST00000493788	ENST00000373299		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
intron-3UTR	ENST00000493788	ENST00000481942		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	CERCAM	chr9	131193582	+	STXBP1	chr9	130457273	+
5CDS-5UTR	ENST00000372133	ENST00000563332		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372133	ENST00000567695		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372133	ENST00000564828		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372133	ENST00000563507		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372133	ENST00000562334		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-intron	ENST00000372133	ENST00000586768		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372133	ENST00000399599		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372116	ENST00000563332		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372116	ENST00000567695		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372116	ENST00000564828		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372116	ENST00000563507		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372116	ENST00000562334		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-intron	ENST00000372116	ENST00000586768		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
5CDS-5UTR	ENST00000372116	ENST00000399599		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	MRPS18A	chr6	43655405	-	CDIP1	chr16	4564665	-
intron-intron	ENST00000563298	ENST00000564353		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-intron	ENST00000563298	ENST00000345005		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-intron	ENST00000563298	ENST00000395066		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-3UTR	ENST00000563298	ENST00000348245		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-3UTR	ENST00000563298	ENST00000352989		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000342932	ENST00000564353		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000342932	ENST00000345005		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000342932	ENST00000395066		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000342932	ENST00000348245		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000342932	ENST00000352989		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000564923	ENST00000564353		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000564923	ENST00000345005		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000564923	ENST00000395066		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000564923	ENST00000348245		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000564923	ENST00000352989		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000568649	ENST00000564353		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000568649	ENST00000345005		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000568649	ENST00000395066		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000568649	ENST00000348245		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000568649	ENST00000352989		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000567336	ENST00000564353		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000567336	ENST00000345005		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-intron	ENST00000567336	ENST00000395066		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000567336	ENST00000348245		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5CDS-3UTR	ENST00000567336	ENST00000352989		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-intron	ENST00000563393	ENST00000564353		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-intron	ENST00000563393	ENST00000345005		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-intron	ENST00000563393	ENST00000395066		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-3UTR	ENST00000563393	ENST00000348245		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
intron-3UTR	ENST00000563393	ENST00000352989		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PPCDC	chr15	75320794	+	CLK3	chr15	74919880	+
5UTR-5UTR	ENST00000536668	ENST00000228862		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
5UTR-intron	ENST00000536668	ENST00000298573		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
5UTR-intron	ENST00000536668	ENST00000545864		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-5UTR	ENST00000544994	ENST00000228862		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000544994	ENST00000298573		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000544994	ENST00000545864		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-5UTR	ENST00000228811	ENST00000228862		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000228811	ENST00000298573		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000228811	ENST00000545864		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-5UTR	ENST00000540107	ENST00000228862		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000540107	ENST00000298573		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000540107	ENST00000545864		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	PRR4	chr12	11324021	-	DUSP16	chr12	12674397	-
In-frame	ENST00000368218	ENST00000368985		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
In-frame	ENST00000368218	ENST00000448301		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
5CDS-5UTR	ENST00000368218	ENST00000480760		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
In-frame	ENST00000368216	ENST00000368985		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
In-frame	ENST00000368216	ENST00000448301		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
5CDS-5UTR	ENST00000368216	ENST00000480760		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
In-frame	ENST00000524343	ENST00000368985		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
In-frame	ENST00000524343	ENST00000448301		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
5CDS-5UTR	ENST00000524343	ENST00000480760		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000476229	ENST00000368985		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000476229	ENST00000448301		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-5UTR	ENST00000476229	ENST00000480760		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000481920	ENST00000368985		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-3CDS	ENST00000481920	ENST00000448301		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-5UTR	ENST00000481920	ENST00000480760		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	RRNAD1	chr1	156699007	+	CTSS	chr1	150730456	-
intron-3UTR	ENST00000449833	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000449833	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000449833	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000409161	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000409161	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000409161	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000423696	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000423696	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000423696	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
5CDS-3UTR	ENST00000338508	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
5CDS-3UTR	ENST00000338508	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
5CDS-intron	ENST00000338508	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000409530	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000409530	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000409530	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000449116	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000449116	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000449116	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000357171	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000357171	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000357171	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000468619	ENST00000388747		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-3UTR	ENST00000468619	ENST00000300432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
intron-intron	ENST00000468619	ENST00000490773		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	SHANK2	chr11	70803468	-	PIP5KL1	chr9	130683883	-
In-frame	ENST00000336078	ENST00000356462		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000336078	ENST00000400345		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000589054		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000256832		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000382850		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000256830		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000588516		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000456986		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000435432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000357895		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000586263		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000456173		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000336078	ENST00000431212		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000591083	ENST00000356462		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000591083	ENST00000400345		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000589054		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000256832		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000382850		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000256830		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000588516		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000456986		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000435432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000357895		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000586263		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000456173		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591083	ENST00000431212		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000589288	ENST00000356462		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000589288	ENST00000400345		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000589054		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000256832		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000382850		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000256830		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000588516		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000456986		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000435432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000357895		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000586263		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000456173		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000589288	ENST00000431212		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000591230	ENST00000356462		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000591230	ENST00000400345		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000589054		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000256832		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000382850		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000256830		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000588516		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000456986		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000435432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000357895		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000586263		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000456173		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591230	ENST00000431212		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000591808	ENST00000356462		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000591808	ENST00000400345		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000589054		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000256832		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000382850		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000256830		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000588516		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000456986		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000435432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000357895		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000586263		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000456173		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
5CDS-intron	ENST00000591808	ENST00000431212		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-3CDS	ENST00000588956	ENST00000356462		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-3CDS	ENST00000588956	ENST00000400345		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000589054		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000256832		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000382850		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000256830		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000588516		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000456986		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000435432		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000357895		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000586263		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000456173		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
intron-intron	ENST00000588956	ENST00000431212		TCGA	LD	UCEC	TCGA-AJ-A3BF-01A	ZNF532	chr18	56585954	+	NEDD4L	chr18	56018223	+
In-frame	ENST00000279907	ENST00000329406		TCGA	LD	UCEC	TCGA-AJ-A3BG-01A	UHRF1BP1L	chr12	100536370	-	PMCH	chr12	102591487	-
In-frame	ENST00000356828	ENST00000329406		TCGA	LD	UCEC	TCGA-AJ-A3BG-01A	UHRF1BP1L	chr12	100536370	-	PMCH	chr12	102591487	-
intron-3CDS	ENST00000545232	ENST00000329406		TCGA	LD	UCEC	TCGA-AJ-A3BG-01A	UHRF1BP1L	chr12	100536370	-	PMCH	chr12	102591487	-
intron-3CDS	ENST00000361711	ENST00000266269		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-3CDS	ENST00000361711	ENST00000405309		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-3CDS	ENST00000361711	ENST00000351933		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-intron	ENST00000361711	ENST00000215919		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-3CDS	ENST00000343939	ENST00000266269		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-3CDS	ENST00000343939	ENST00000405309		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-3CDS	ENST00000343939	ENST00000351933		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
intron-intron	ENST00000343939	ENST00000215919		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-3CDS	ENST00000393306	ENST00000266269		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-3CDS	ENST00000393306	ENST00000405309		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-3CDS	ENST00000393306	ENST00000351933		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-intron	ENST00000393306	ENST00000215919		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-3CDS	ENST00000565123	ENST00000266269		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-3CDS	ENST00000565123	ENST00000405309		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-3CDS	ENST00000565123	ENST00000351933		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
5UTR-intron	ENST00000565123	ENST00000215919		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
3UTR-3CDS	ENST00000563543	ENST00000266269		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
3UTR-3CDS	ENST00000563543	ENST00000405309		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
3UTR-3CDS	ENST00000563543	ENST00000351933		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
3UTR-intron	ENST00000563543	ENST00000215919		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	OSGIN1	chr16	83986975	+	PATZ1	chr22	31723295	-
In-frame	ENST00000271526	ENST00000368218		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
In-frame	ENST00000271526	ENST00000368216		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
5CDS-intron	ENST00000271526	ENST00000524343		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
5CDS-intron	ENST00000271526	ENST00000476229		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
5CDS-intron	ENST00000271526	ENST00000481920		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
In-frame	ENST00000353233	ENST00000368218		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
In-frame	ENST00000353233	ENST00000368216		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
5CDS-intron	ENST00000353233	ENST00000524343		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
5CDS-intron	ENST00000353233	ENST00000476229		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
5CDS-intron	ENST00000353233	ENST00000481920		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
intron-3CDS	ENST00000491853	ENST00000368218		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
intron-3CDS	ENST00000491853	ENST00000368216		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
intron-intron	ENST00000491853	ENST00000524343		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
intron-intron	ENST00000491853	ENST00000476229		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
intron-intron	ENST00000491853	ENST00000481920		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PRCC	chr1	156738031	+	RRNAD1	chr1	156701783	+
intron-3CDS	ENST00000465917	ENST00000263238		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
intron-5UTR	ENST00000465917	ENST00000536059		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
intron-5UTR	ENST00000465917	ENST00000535589		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
Frame-shit	ENST00000245796	ENST00000263238		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
5CDS-5UTR	ENST00000245796	ENST00000536059		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
5CDS-5UTR	ENST00000245796	ENST00000535589		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
Frame-shit	ENST00000441564	ENST00000263238		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
5CDS-5UTR	ENST00000441564	ENST00000536059		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
5CDS-5UTR	ENST00000441564	ENST00000535589		TCGA	LD	UCEC	TCGA-AJ-A3EJ-01A	PSD4	chr2	113956803	+	ACTR3	chr2	114670749	+
intron-5UTR	ENST00000341217	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000341217	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000341217	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000581407	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000581407	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000581407	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000582266	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000582266	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000582266	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000452648	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000452648	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000452648	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000582059	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000582059	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000582059	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000583953	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000583953	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
intron-5UTR	ENST00000583953	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000577682	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000577682	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000577682	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000583522	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000583522	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000583522	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000581381	ENST00000346213		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000581381	ENST00000393860		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5UTR-5UTR	ENST00000581381	ENST00000547517		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	FAM222B	chr17	27169700	-	RAB5C	chr17	40282608	-
5CDS-3UTR	ENST00000374864	ENST00000392485		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-3UTR	ENST00000374864	ENST00000359995		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-intron	ENST00000374864	ENST00000508921		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-3UTR	ENST00000535650	ENST00000392485		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-3UTR	ENST00000535650	ENST00000359995		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-intron	ENST00000535650	ENST00000508921		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-3UTR	ENST00000262650	ENST00000392485		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-3UTR	ENST00000262650	ENST00000359995		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
5CDS-intron	ENST00000262650	ENST00000508921		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
intron-3UTR	ENST00000483727	ENST00000392485		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
intron-3UTR	ENST00000483727	ENST00000359995		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
intron-intron	ENST00000483727	ENST00000508921		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	ITCH	chr20	33001685	+	SRSF2	chr17	74730644	-
In-frame	ENST00000407071	ENST00000292211		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	KIF26B	chr1	245583047	+	UBE2Q1	chr1	154524295	-
5CDS-intron	ENST00000407071	ENST00000497453		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	KIF26B	chr1	245583047	+	UBE2Q1	chr1	154524295	-
intron-3CDS	ENST00000366518	ENST00000292211		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	KIF26B	chr1	245583047	+	UBE2Q1	chr1	154524295	-
intron-intron	ENST00000366518	ENST00000497453		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	KIF26B	chr1	245583047	+	UBE2Q1	chr1	154524295	-
intron-3CDS	ENST00000479506	ENST00000292211		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	KIF26B	chr1	245583047	+	UBE2Q1	chr1	154524295	-
intron-intron	ENST00000479506	ENST00000497453		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	KIF26B	chr1	245583047	+	UBE2Q1	chr1	154524295	-
intron-5UTR	ENST00000448637	ENST00000465804		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-intron	ENST00000448637	ENST00000360632		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-intron	ENST00000448637	ENST00000467467		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-intron	ENST00000448637	ENST00000474080		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-5UTR	ENST00000312675	ENST00000465804		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000312675	ENST00000360632		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000312675	ENST00000467467		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000312675	ENST00000474080		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-5UTR	ENST00000543006	ENST00000465804		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000543006	ENST00000360632		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000543006	ENST00000467467		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-intron	ENST00000543006	ENST00000474080		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-5UTR	ENST00000471917	ENST00000465804		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-intron	ENST00000471917	ENST00000360632		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-intron	ENST00000471917	ENST00000467467		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
intron-intron	ENST00000471917	ENST00000474080		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	LPP	chr3	187943315	+	WWTR1	chr3	149387678	-
5UTR-5UTR	ENST00000359337	ENST00000381792		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000346753		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000406725		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000406856		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000359337	ENST00000442782		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000381792		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000346753		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000406725		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000406856		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
5UTR-5UTR	ENST00000449103	ENST00000442782		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000381792		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000346753		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000406725		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000406856		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
intron-5UTR	ENST00000496720	ENST00000442782		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	PLXNB2	chr22	50745982	-	TMPRSS6	chr22	37499458	-
intron-3CDS	ENST00000424834	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000424834	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3UTR	ENST00000424834	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
5UTR-3CDS	ENST00000382108	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
5UTR-3CDS	ENST00000382108	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
5UTR-3UTR	ENST00000382108	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
5UTR-3CDS	ENST00000382095	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
5UTR-3CDS	ENST00000382095	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
5UTR-3UTR	ENST00000382095	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000474317	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000474317	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3UTR	ENST00000474317	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000399949	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000399949	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3UTR	ENST00000399949	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000409126	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000409126	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3UTR	ENST00000409126	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000343003	ENST00000216027		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000343003	ENST00000398941		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3UTR	ENST00000343003	ENST00000495977		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SPATA13	chr13	24735071	+	HSCB	chr22	29147229	+
intron-3CDS	ENST00000414007	ENST00000335351		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SRGAP2	chr1	206135293	+	TCFL5	chr20	61485509	-
intron-3CDS	ENST00000414007	ENST00000217162		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SRGAP2	chr1	206135293	+	TCFL5	chr20	61485509	-
intron-3CDS	ENST00000419187	ENST00000335351		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SRGAP2	chr1	206135293	+	TCFL5	chr20	61485509	-
intron-3CDS	ENST00000419187	ENST00000217162		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SRGAP2	chr1	206135293	+	TCFL5	chr20	61485509	-
intron-3CDS	ENST00000471256	ENST00000335351		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SRGAP2	chr1	206135293	+	TCFL5	chr20	61485509	-
intron-3CDS	ENST00000471256	ENST00000217162		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SRGAP2	chr1	206135293	+	TCFL5	chr20	61485509	-
Frame-shit	ENST00000367723	ENST00000358155		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367723	ENST00000367733		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367723	ENST00000355305		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367723	ENST00000367731		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000367723	ENST00000520906		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000608151	ENST00000358155		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000608151	ENST00000367733		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000608151	ENST00000355305		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000608151	ENST00000367731		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000608151	ENST00000520906		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000610051	ENST00000358155		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000610051	ENST00000367733		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000610051	ENST00000355305		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000610051	ENST00000367731		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000610051	ENST00000520906		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000263688	ENST00000358155		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000263688	ENST00000367733		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000263688	ENST00000355305		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000263688	ENST00000367731		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
Frame-shit	ENST00000263688	ENST00000520906		TCGA	LD	UCEC	TCGA-AJ-A3EM-01A	SUCO	chr1	172502637	+	DNM3	chr1	171956796	+
intron-3CDS	ENST00000558351	ENST00000524892		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
intron-3CDS	ENST00000558351	ENST00000298815		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
intron-intron	ENST00000558351	ENST00000534060		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
In-frame	ENST00000334660	ENST00000524892		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
In-frame	ENST00000334660	ENST00000298815		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
5CDS-intron	ENST00000334660	ENST00000534060		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
In-frame	ENST00000560397	ENST00000524892		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
In-frame	ENST00000560397	ENST00000298815		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
5CDS-intron	ENST00000560397	ENST00000534060		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	CHP1	chr15	41523647	+	ARHGAP42	chr11	100830614	+
5UTR-5UTR	ENST00000396113	ENST00000259523		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
5UTR-5UTR	ENST00000396113	ENST00000377970		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
5UTR-5UTR	ENST00000396113	ENST00000524013		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000286687	ENST00000259523		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000286687	ENST00000377970		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000286687	ENST00000524013		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000396111	ENST00000259523		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000396111	ENST00000377970		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000396111	ENST00000524013		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000521840	ENST00000259523		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000521840	ENST00000377970		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000521840	ENST00000524013		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000542894	ENST00000259523		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000542894	ENST00000377970		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000542894	ENST00000524013		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000396124	ENST00000259523		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000396124	ENST00000377970		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-5UTR	ENST00000396124	ENST00000524013		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	NDUFAF6	chr8	95908155	+	MYC	chr8	128750494	+
intron-3CDS	ENST00000408388	ENST00000414645		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	PVT1	chr8	128806980	+	DPY19L4	chr8	95789894	+
5UTR-5UTR	ENST00000394420	ENST00000219162		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	RSPRY1	chr16	57220363	+	MT4	chr16	56599005	+
5UTR-5UTR	ENST00000537866	ENST00000219162		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	RSPRY1	chr16	57220363	+	MT4	chr16	56599005	+
intron-5UTR	ENST00000563073	ENST00000219162		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	RSPRY1	chr16	57220363	+	MT4	chr16	56599005	+
5CDS-5UTR	ENST00000321276	ENST00000416485		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	SGPP2	chr2	223289540	+	TEN1	chr17	73982268	+
5CDS-5UTR	ENST00000321276	ENST00000397640		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	SGPP2	chr2	223289540	+	TEN1	chr17	73982268	+
5CDS-5UTR	ENST00000321276	ENST00000588202		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	SGPP2	chr2	223289540	+	TEN1	chr17	73982268	+
In-frame	ENST00000253251	ENST00000374980		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	UBE4B	chr1	10093752	+	EIF2S2	chr20	32693351	-
5UTR-3CDS	ENST00000377157	ENST00000374980		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	UBE4B	chr1	10093752	+	EIF2S2	chr20	32693351	-
In-frame	ENST00000343090	ENST00000374980		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	UBE4B	chr1	10093752	+	EIF2S2	chr20	32693351	-
In-frame	ENST00000377153	ENST00000374980		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	UBE4B	chr1	10093752	+	EIF2S2	chr20	32693351	-
intron-3CDS	ENST00000475795	ENST00000374980		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	UBE4B	chr1	10093752	+	EIF2S2	chr20	32693351	-
5CDS-3UTR	ENST00000400794	ENST00000219481		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-intron	ENST00000400794	ENST00000397710		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000400794	ENST00000424398		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000400794	ENST00000461947		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000361054	ENST00000219481		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-intron	ENST00000361054	ENST00000397710		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000361054	ENST00000424398		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000361054	ENST00000461947		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000369962	ENST00000219481		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-intron	ENST00000369962	ENST00000397710		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000369962	ENST00000424398		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000369962	ENST00000461947		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000369965	ENST00000219481		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-intron	ENST00000369965	ENST00000397710		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000369965	ENST00000424398		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000369965	ENST00000461947		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000357672	ENST00000219481		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-intron	ENST00000357672	ENST00000397710		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000357672	ENST00000424398		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5CDS-3UTR	ENST00000357672	ENST00000461947		TCGA	LD	UCEC	TCGA-AJ-A3I9-01A	WDR47	chr1	109544846	-	DECR2	chr16	461890	+
5UTR-3CDS	ENST00000254977	ENST00000409192		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000254977	ENST00000344962		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000254977	ENST00000409653		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000254977	ENST00000409994		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-intron	ENST00000254977	ENST00000483090		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000399006	ENST00000409192		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000399006	ENST00000344962		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000399006	ENST00000409653		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000399006	ENST00000409994		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-intron	ENST00000399006	ENST00000483090		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000405977	ENST00000409192		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000405977	ENST00000344962		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000405977	ENST00000409653		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-3CDS	ENST00000405977	ENST00000409994		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
5UTR-intron	ENST00000405977	ENST00000483090		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000378226	ENST00000409192		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000378226	ENST00000344962		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000378226	ENST00000409653		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000378226	ENST00000409994		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-intron	ENST00000378226	ENST00000483090		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000488503	ENST00000409192		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000488503	ENST00000344962		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000488503	ENST00000409653		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-3CDS	ENST00000488503	ENST00000409994		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
intron-intron	ENST00000488503	ENST00000483090		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	BTBD3	chr20	11871602	+	FAM221A	chr7	23728888	+
Frame-shit	ENST00000368326	ENST00000366882		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000368326	ENST00000354448		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
Frame-shit	ENST00000368326	ENST00000539869		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000368326	ENST00000535229		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000368325	ENST00000366882		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000368325	ENST00000354448		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000368325	ENST00000539869		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000368325	ENST00000535229		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000368328	ENST00000366882		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000368328	ENST00000354448		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000368328	ENST00000539869		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
5CDS-intron	ENST00000368328	ENST00000535229		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	CENPW	chr6	126667464	+	PDE10A	chr6	165809948	-
In-frame	ENST00000367419	ENST00000360388		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	GINM1	chr6	149893739	+	SLC35F1	chr6	118556672	+
5CDS-intron	ENST00000367384	ENST00000366952		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367384	ENST00000366953		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367384	ENST00000491092		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367378	ENST00000366952		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367378	ENST00000366953		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367378	ENST00000491092		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000464889	ENST00000366952		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000464889	ENST00000366953		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000464889	ENST00000491092		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367380	ENST00000366952		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367380	ENST00000366953		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000367380	ENST00000491092		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000544496	ENST00000366952		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000544496	ENST00000366953		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5CDS-intron	ENST00000544496	ENST00000491092		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
intron-intron	ENST00000480010	ENST00000366952		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
intron-intron	ENST00000480010	ENST00000366953		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
intron-intron	ENST00000480010	ENST00000491092		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PCMT1	chr6	150094305	+	SLC22A2	chr6	160592469	-
5UTR-intron	ENST00000560626	ENST00000520052		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000560626	ENST00000520734		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000560626	ENST00000518386		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000558305	ENST00000520052		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000558305	ENST00000520734		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000558305	ENST00000518386		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
intron-intron	ENST00000567337	ENST00000520052		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
intron-intron	ENST00000567337	ENST00000520734		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
intron-intron	ENST00000567337	ENST00000518386		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000312493	ENST00000520052		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000312493	ENST00000520734		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
5UTR-intron	ENST00000312493	ENST00000518386		TCGA	LD	UCEC	TCGA-AJ-A3IA-01A	PEAK1	chr15	77544709	-	ANGPT1	chr8	108359325	-
In-frame	ENST00000276692	ENST00000299300		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
In-frame	ENST00000276692	ENST00000544368		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
5CDS-5UTR	ENST00000276692	ENST00000543146		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
5UTR-3CDS	ENST00000519548	ENST00000299300		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
5UTR-3CDS	ENST00000519548	ENST00000544368		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
5UTR-5UTR	ENST00000519548	ENST00000543146		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
intron-3CDS	ENST00000517678	ENST00000299300		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
intron-3CDS	ENST00000517678	ENST00000544368		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
intron-5UTR	ENST00000517678	ENST00000543146		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
intron-3CDS	ENST00000521546	ENST00000299300		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
intron-3CDS	ENST00000521546	ENST00000544368		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
intron-5UTR	ENST00000521546	ENST00000543146		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
In-frame	ENST00000605953	ENST00000299300		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
In-frame	ENST00000605953	ENST00000544368		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
5CDS-5UTR	ENST00000605953	ENST00000543146		TCGA	LD	UCEC	TCGA-AJ-A3NF-01A	TATDN1	chr8	125551266	-	CCT2	chr12	69980050	+
5UTR-3CDS	ENST00000290776	ENST00000306061		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-intron	ENST00000290776	ENST00000568293		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-intron	ENST00000290776	ENST00000330439		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-3CDS	ENST00000537605	ENST00000306061		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-intron	ENST00000537605	ENST00000568293		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-intron	ENST00000537605	ENST00000330439		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-3CDS	ENST00000535318	ENST00000306061		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-intron	ENST00000535318	ENST00000568293		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-intron	ENST00000535318	ENST00000330439		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
intron-3CDS	ENST00000565874	ENST00000306061		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
intron-intron	ENST00000565874	ENST00000568293		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
intron-intron	ENST00000565874	ENST00000330439		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
intron-3CDS	ENST00000565951	ENST00000306061		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
intron-intron	ENST00000565951	ENST00000568293		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
intron-intron	ENST00000565951	ENST00000330439		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	CPNE2	chr16	57126702	+	MT1E	chr16	56660378	+
5UTR-3CDS	ENST00000292852	ENST00000378626		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	FBXO17	chr19	39466226	-	LGALS7	chr19	39263743	-
intron-3CDS	ENST00000595329	ENST00000378626		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	FBXO17	chr19	39466226	-	LGALS7	chr19	39263743	-
5CDS-intron	ENST00000337827	ENST00000487861		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000337827	ENST00000471583		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000337827	ENST00000487270		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000337827	ENST00000488612		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000337827	ENST00000390683		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000337827	ENST00000469165		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000448469	ENST00000487861		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000448469	ENST00000471583		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000448469	ENST00000487270		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000448469	ENST00000488612		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000448469	ENST00000390683		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000448469	ENST00000469165		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000553669	ENST00000487861		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000553669	ENST00000471583		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000553669	ENST00000487270		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000553669	ENST00000488612		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000553669	ENST00000390683		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
5CDS-intron	ENST00000553669	ENST00000469165		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000554858	ENST00000487861		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000554858	ENST00000471583		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000554858	ENST00000487270		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000554858	ENST00000488612		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000554858	ENST00000390683		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
intron-intron	ENST00000554858	ENST00000469165		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GALNT16	chr14	69791507	+	RAD51B	chr14	69149654	+
Frame-shit	ENST00000422163	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000422163	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000422163	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000422163	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
3UTR-3CDS	ENST00000491100	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
3UTR-3CDS	ENST00000491100	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
3UTR-intron	ENST00000491100	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
3UTR-intron	ENST00000491100	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000313601	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000313601	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000313601	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000313601	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000536647	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000536647	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000536647	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000536647	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000440628	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000440628	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000440628	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000440628	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000451956	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000451956	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000451956	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000451956	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000266027	ENST00000255559		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
Frame-shit	ENST00000266027	ENST00000542342		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000266027	ENST00000579988		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
5CDS-intron	ENST00000266027	ENST00000579732		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	GNAI2	chr3	50293752	+	SLC39A11	chr17	70732858	-
intron-intron	ENST00000372189	ENST00000459703		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000372189	ENST00000393189		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000372189	ENST00000244751		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
5CDS-intron	ENST00000372195	ENST00000459703		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
5CDS-intron	ENST00000372195	ENST00000393189		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
5CDS-intron	ENST00000372195	ENST00000244751		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000372190	ENST00000459703		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000372190	ENST00000393189		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000372190	ENST00000244751		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000481260	ENST00000459703		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000481260	ENST00000393189		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
intron-intron	ENST00000481260	ENST00000244751		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RAPGEF1	chr9	134615157	-	CPNE5	chr6	36762426	-
In-frame	ENST00000353145	ENST00000247001		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000353145	ENST00000585763		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000353145	ENST00000334782		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
In-frame	ENST00000303088	ENST00000247001		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000303088	ENST00000585763		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000303088	ENST00000334782		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
In-frame	ENST00000456252	ENST00000247001		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000456252	ENST00000585763		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000456252	ENST00000334782		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
In-frame	ENST00000407360	ENST00000247001		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000407360	ENST00000585763		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000407360	ENST00000334782		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
In-frame	ENST00000392324	ENST00000247001		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000392324	ENST00000585763		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
5CDS-intron	ENST00000392324	ENST00000334782		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	RFXANK	chr19	19310043	+	SUGP1	chr19	19391100	-
Frame-shit	ENST00000301244	ENST00000587515		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000301244	ENST00000591291		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000301244	ENST00000347262		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000301244	ENST00000301242		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000301244	ENST00000591585		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
intron-3CDS	ENST00000587090	ENST00000587515		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
intron-intron	ENST00000587090	ENST00000591291		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
intron-intron	ENST00000587090	ENST00000347262		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
intron-intron	ENST00000587090	ENST00000301242		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
intron-intron	ENST00000587090	ENST00000591585		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
Frame-shit	ENST00000454580	ENST00000587515		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000454580	ENST00000591291		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000454580	ENST00000347262		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000454580	ENST00000301242		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5CDS-intron	ENST00000454580	ENST00000591585		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	SPINT2	chr19	38755638	+	PPP1R14A	chr19	38742978	-
5UTR-intron	ENST00000589046	ENST00000254322		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-5UTR	ENST00000589046	ENST00000396969		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-intron	ENST00000420450	ENST00000254322		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-5UTR	ENST00000420450	ENST00000396969		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-intron	ENST00000526123	ENST00000254322		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-5UTR	ENST00000526123	ENST00000396969		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
3UTR-intron	ENST00000432005	ENST00000254322		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
3UTR-5UTR	ENST00000432005	ENST00000396969		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-intron	ENST00000529555	ENST00000254322		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
5UTR-5UTR	ENST00000529555	ENST00000396969		TCGA	LD	UCEC	TCGA-AJ-A3NH-01A	ZNF345	chr19	37342806	+	DNAJB1	chr19	14638622	-
intron-3CDS	ENST00000306503	ENST00000233146		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
intron-3CDS	ENST00000306503	ENST00000543555		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
intron-3CDS	ENST00000306503	ENST00000406134		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
intron-intron	ENST00000306503	ENST00000461394		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
5UTR-3CDS	ENST00000394861	ENST00000233146		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
5UTR-3CDS	ENST00000394861	ENST00000543555		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
5UTR-3CDS	ENST00000394861	ENST00000406134		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
5UTR-intron	ENST00000394861	ENST00000461394		TCGA	LD	UCEC	TCGA-AJ-A3OJ-01A	SOCS5	chr2	46926588	+	MSH2	chr2	47656881	+
intron-5UTR	ENST00000597208	ENST00000513733		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CCZ1B	chr7	6851583	-	NAA11	chr4	80147424	-
intron-intron	ENST00000597208	ENST00000286794		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CCZ1B	chr7	6851583	-	NAA11	chr4	80147424	-
5CDS-5UTR	ENST00000316731	ENST00000513733		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CCZ1B	chr7	6851583	-	NAA11	chr4	80147424	-
5CDS-intron	ENST00000316731	ENST00000286794		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CCZ1B	chr7	6851583	-	NAA11	chr4	80147424	-
5CDS-5UTR	ENST00000538180	ENST00000513733		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CCZ1B	chr7	6851583	-	NAA11	chr4	80147424	-
5CDS-intron	ENST00000538180	ENST00000286794		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CCZ1B	chr7	6851583	-	NAA11	chr4	80147424	-
5CDS-5UTR	ENST00000350796	ENST00000282470		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000350796	ENST00000418378		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
5CDS-5UTR	ENST00000350796	ENST00000503414		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000396741	ENST00000282470		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000396741	ENST00000418378		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000396741	ENST00000503414		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000488964	ENST00000282470		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000488964	ENST00000418378		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
intron-5UTR	ENST00000488964	ENST00000503414		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	CYTH3	chr7	6312105	-	SPARCL1	chr4	88420737	-
Frame-shit	ENST00000316738	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000316738	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5CDS-5UTR	ENST00000316738	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000555872	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000555872	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5CDS-5UTR	ENST00000555872	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000556609	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000556609	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5CDS-5UTR	ENST00000556609	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000267544	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000267544	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5CDS-5UTR	ENST00000267544	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5UTR-3CDS	ENST00000550103	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5UTR-3CDS	ENST00000550103	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5UTR-5UTR	ENST00000550103	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000538485	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000538485	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5CDS-5UTR	ENST00000538485	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000556005	ENST00000357056		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
Frame-shit	ENST00000556005	ENST00000328459		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5CDS-5UTR	ENST00000556005	ENST00000554654		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	EFCAB11	chr14	90397885	-	TTC7B	chr14	91044652	-
5UTR-intron	ENST00000539409	ENST00000309364		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000359180		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000317589		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000355397		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000429027		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000539256		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000299275		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000538714		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000543806		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000424268		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000540972		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000539409	ENST00000510738		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000309364		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000359180		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000317589		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000355397		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000429027		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000539256		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000299275		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000538714		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000543806		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000424268		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000540972		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000337682	ENST00000510738		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000309364		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000359180		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000317589		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000355397		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000429027		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000539256		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000299275		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000538714		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000543806		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000424268		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000540972		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
intron-intron	ENST00000454658	ENST00000510738		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000309364		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000359180		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000317589		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000355397		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000429027		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000539256		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000299275		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000538714		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000543806		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000424268		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000540972		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000395766	ENST00000510738		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000309364		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000359180		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000317589		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000355397		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000429027		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000539256		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000299275		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000538714		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000543806		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000424268		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000540972		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000542983	ENST00000510738		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000309364		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000359180		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000317589		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000355397		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000429027		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000539256		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000299275		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000538714		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000543806		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000424268		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000540972		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
5UTR-intron	ENST00000536836	ENST00000510738		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	FAM60A	chr12	31478958	-	PLEKHA5	chr12	19473496	+
Frame-shit	ENST00000296181	ENST00000393469		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
Frame-shit	ENST00000296181	ENST00000423114		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
Frame-shit	ENST00000296181	ENST00000469902		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
5CDS-5UTR	ENST00000296181	ENST00000314584		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
5CDS-5UTR	ENST00000296181	ENST00000430155		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
5CDS-5UTR	ENST00000296181	ENST00000465475		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
intron-3CDS	ENST00000461306	ENST00000393469		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
intron-3CDS	ENST00000461306	ENST00000423114		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
intron-3CDS	ENST00000461306	ENST00000469902		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
intron-5UTR	ENST00000461306	ENST00000314584		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
intron-5UTR	ENST00000461306	ENST00000430155		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
intron-5UTR	ENST00000461306	ENST00000465475		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ITGB5	chr3	124605778	-	SLC12A8	chr3	124839530	-
In-frame	ENST00000305997	ENST00000370910		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-intron	ENST00000305997	ENST00000361420		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-5UTR	ENST00000305997	ENST00000370903		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-5UTR	ENST00000305997	ENST00000370904		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-intron	ENST00000305997	ENST00000467244		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-intron	ENST00000305997	ENST00000370900		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-5UTR	ENST00000305997	ENST00000370901		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-3CDS	ENST00000486484	ENST00000370910		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-intron	ENST00000486484	ENST00000361420		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-5UTR	ENST00000486484	ENST00000370903		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-5UTR	ENST00000486484	ENST00000370904		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-intron	ENST00000486484	ENST00000467244		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-intron	ENST00000486484	ENST00000370900		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5UTR-5UTR	ENST00000486484	ENST00000370901		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	MBOAT2	chr2	9143669	-	IGSF1	chrX	130423249	-
5CDS-intron	ENST00000375394	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000375394	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000375394	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000375394	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000488648	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000488648	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000488648	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000488648	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000544581	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000544581	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000544581	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
5CDS-intron	ENST00000544581	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000448219	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000448219	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000448219	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000448219	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000471547	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000471547	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000471547	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000471547	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000429465	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000429465	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000429465	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000429465	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000476338	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000476338	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000476338	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000476338	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000412823	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000412823	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000412823	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000412823	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000480914	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000480914	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000480914	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000480914	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000383336	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000383336	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000383336	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000383336	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000461360	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000461360	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000461360	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000461360	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000421789	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000421789	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000421789	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000421789	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000466463	ENST00000414046		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000466463	ENST00000419355		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000466463	ENST00000457127		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
intron-intron	ENST00000466463	ENST00000423496		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SKIV2L	chr6	31935154	+	HCP5	chr6	31444804	+
In-frame	ENST00000348495	ENST00000222248		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SSBP4	chr19	18544627	+	SLC5A5	chr19	17994659	+
In-frame	ENST00000270061	ENST00000222248		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SSBP4	chr19	18544627	+	SLC5A5	chr19	17994659	+
intron-3CDS	ENST00000598159	ENST00000222248		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SSBP4	chr19	18544627	+	SLC5A5	chr19	17994659	+
In-frame	ENST00000599699	ENST00000222248		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	SSBP4	chr19	18544627	+	SLC5A5	chr19	17994659	+
5CDS-5UTR	ENST00000300737	ENST00000355897		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
5CDS-intron	ENST00000300737	ENST00000482813		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
5CDS-5UTR	ENST00000527651	ENST00000355897		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
5CDS-intron	ENST00000527651	ENST00000482813		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
intron-5UTR	ENST00000527484	ENST00000355897		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
intron-intron	ENST00000527484	ENST00000482813		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
intron-5UTR	ENST00000533977	ENST00000355897		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
intron-intron	ENST00000533977	ENST00000482813		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	STIM1	chr11	3877639	+	GPR160	chr3	169797562	+
intron-3CDS	ENST00000259746	ENST00000544071		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-3CDS	ENST00000259746	ENST00000371933		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-5UTR	ENST00000259746	ENST00000484461		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-3CDS	ENST00000323267	ENST00000544071		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-3CDS	ENST00000323267	ENST00000371933		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-5UTR	ENST00000323267	ENST00000484461		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-3CDS	ENST00000527188	ENST00000544071		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-3CDS	ENST00000527188	ENST00000371933		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
intron-5UTR	ENST00000527188	ENST00000484461		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	TMEM63B	chr6	44095603	+	EFCAB14	chr1	47157609	-
5UTR-intron	ENST00000373510	ENST00000441210		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-intron	ENST00000373510	ENST00000457433		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-intron	ENST00000373510	ENST00000271064		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-3UTR	ENST00000373510	ENST00000537531		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-3UTR	ENST00000373510	ENST00000481165		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-intron	ENST00000316459	ENST00000441210		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-intron	ENST00000316459	ENST00000457433		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-intron	ENST00000316459	ENST00000271064		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-3UTR	ENST00000316459	ENST00000537531		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-3UTR	ENST00000316459	ENST00000481165		TCGA	LD	UCEC	TCGA-AJ-A3QS-01A	ZBTB8A	chr1	33019141	+	TINAGL1	chr1	32050279	+
5UTR-3CDS	ENST00000269214	ENST00000300413		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESCO1	chr18	19180584	-	SNRPD1	chr18	19202686	+
5UTR-3CDS	ENST00000269214	ENST00000579618		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESCO1	chr18	19180584	-	SNRPD1	chr18	19202686	+
5UTR-intron	ENST00000269214	ENST00000582475		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESCO1	chr18	19180584	-	SNRPD1	chr18	19202686	+
5UTR-3CDS	ENST00000580101	ENST00000300413		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESCO1	chr18	19180584	-	SNRPD1	chr18	19202686	+
5UTR-3CDS	ENST00000580101	ENST00000579618		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESCO1	chr18	19180584	-	SNRPD1	chr18	19202686	+
5UTR-intron	ENST00000580101	ENST00000582475		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESCO1	chr18	19180584	-	SNRPD1	chr18	19202686	+
3UTR-3UTR	ENST00000406310	ENST00000247956		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESRRA	chr11	64083440	+	ZNF317	chr19	9273732	+
3UTR-3UTR	ENST00000406310	ENST00000360385		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESRRA	chr11	64083440	+	ZNF317	chr19	9273732	+
3UTR-3UTR	ENST00000000442	ENST00000247956		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESRRA	chr11	64083440	+	ZNF317	chr19	9273732	+
3UTR-3UTR	ENST00000000442	ENST00000360385		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESRRA	chr11	64083440	+	ZNF317	chr19	9273732	+
3UTR-3UTR	ENST00000405666	ENST00000247956		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESRRA	chr11	64083440	+	ZNF317	chr19	9273732	+
3UTR-3UTR	ENST00000405666	ENST00000360385		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ESRRA	chr11	64083440	+	ZNF317	chr19	9273732	+
5CDS-intron	ENST00000361891	ENST00000271915		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000361891	ENST00000361147		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000361891	ENST00000358505		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000361891	ENST00000515643		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
intron-intron	ENST00000480213	ENST00000271915		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
intron-intron	ENST00000480213	ENST00000361147		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
intron-intron	ENST00000480213	ENST00000358505		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
intron-intron	ENST00000480213	ENST00000515643		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000368681	ENST00000271915		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000368681	ENST00000361147		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000368681	ENST00000358505		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
5CDS-intron	ENST00000368681	ENST00000515643		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	ILF2	chr1	153642312	-	KCNN3	chr1	154709564	-
In-frame	ENST00000394936	ENST00000337344		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
In-frame	ENST00000394936	ENST00000375477		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
In-frame	ENST00000394936	ENST00000375479		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394936	ENST00000493650		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394936	ENST00000375459		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394936	ENST00000246505		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394936	ENST00000375457		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
In-frame	ENST00000394934	ENST00000337344		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
In-frame	ENST00000394934	ENST00000375477		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
In-frame	ENST00000394934	ENST00000375479		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394934	ENST00000493650		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394934	ENST00000375459		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394934	ENST00000246505		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
5CDS-intron	ENST00000394934	ENST00000375457		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	PSAP	chr10	73610939	-	PCID2	chr13	113854830	-
3UTR-3CDS	ENST00000418948	ENST00000422163		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
3UTR-3UTR	ENST00000418948	ENST00000491100		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
3UTR-3UTR	ENST00000418948	ENST00000313601		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
3UTR-intron	ENST00000418948	ENST00000536647		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
3UTR-5UTR	ENST00000418948	ENST00000440628		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
3UTR-5UTR	ENST00000418948	ENST00000451956		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
3UTR-5UTR	ENST00000418948	ENST00000266027		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	SEMA3B	chr3	50311488	+	GNAI2	chr3	50289532	+
intron-3UTR	ENST00000377897	ENST00000392210		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000377897	ENST00000309318		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-intron	ENST00000377897	ENST00000542235		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000294179	ENST00000392210		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000294179	ENST00000309318		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-intron	ENST00000294179	ENST00000542235		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000394690	ENST00000392210		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000394690	ENST00000309318		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-intron	ENST00000394690	ENST00000542235		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000541317	ENST00000392210		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-3UTR	ENST00000541317	ENST00000309318		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-intron	ENST00000541317	ENST00000542235		TCGA	LD	UCEC	TCGA-AJ-A3TW-01A	STX5	chr11	62591689	-	PPP1R14B	chr11	64011967	-
intron-5UTR	ENST00000418066	ENST00000573319		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	ANXA4	chr2	69969307	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000409920	ENST00000573319		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	ANXA4	chr2	69969307	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000394295	ENST00000573319		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	ANXA4	chr2	69969307	+	BCAR4	chr16	11914154	-
5UTR-5UTR	ENST00000536030	ENST00000573319		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	ANXA4	chr2	69969307	+	BCAR4	chr16	11914154	-
intron-3CDS	ENST00000408388	ENST00000003084		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	PVT1	chr8	128806980	+	CFTR	chr7	117199518	+
intron-3CDS	ENST00000408388	ENST00000454343		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	PVT1	chr8	128806980	+	CFTR	chr7	117199518	+
intron-intron	ENST00000408388	ENST00000608965		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	PVT1	chr8	128806980	+	CFTR	chr7	117199518	+
intron-5UTR	ENST00000458578	ENST00000167462		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
intron-5UTR	ENST00000458578	ENST00000375227		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
intron-5UTR	ENST00000458578	ENST00000392550		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
intron-5UTR	ENST00000458578	ENST00000578363		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
intron-5UTR	ENST00000458578	ENST00000577200		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000342192	ENST00000167462		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000342192	ENST00000375227		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000342192	ENST00000392550		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000342192	ENST00000578363		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000342192	ENST00000577200		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000545681	ENST00000167462		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000545681	ENST00000375227		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000545681	ENST00000392550		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000545681	ENST00000578363		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
5CDS-5UTR	ENST00000545681	ENST00000577200		TCGA	LD	UCEC	TCGA-AJ-A6NU-01A	UBE2L3	chr22	21922060	+	LLGL2	chr17	73539478	+
intron-3CDS	ENST00000344771	ENST00000329517		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000344771	ENST00000403325		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000344771	ENST00000405009		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-5UTR	ENST00000344771	ENST00000460402		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000395059	ENST00000329517		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000395059	ENST00000403325		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000395059	ENST00000405009		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-5UTR	ENST00000395059	ENST00000460402		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000262518	ENST00000329517		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000262518	ENST00000403325		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-3CDS	ENST00000262518	ENST00000405009		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
intron-5UTR	ENST00000262518	ENST00000460402		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	SRCAP	chr16	30752028	+	GNB1L	chr22	19799970	-
5CDS-5UTR	ENST00000549578	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000549578	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5CDS-5UTR	ENST00000360579	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
intron-5UTR	ENST00000552130	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000447578	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000546588	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000549970	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000539627		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000604123		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000413014		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000392002		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000436170		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000447302		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000544232		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000542945		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
5UTR-5UTR	ENST00000551655	ENST00000356385		TCGA	LD	UCEC	TCGA-AP-A3K1-01A	VPS29	chr12	110939854	-	TMEM91	chr19	41884186	+
In-frame	ENST00000508305	ENST00000337195		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
In-frame	ENST00000508305	ENST00000531469		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000508305	ENST00000494626		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
In-frame	ENST00000508305	ENST00000411419		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000508305	ENST00000476817		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000508305	ENST00000309035		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000508305	ENST00000334808		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000239440	ENST00000337195		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000239440	ENST00000531469		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
In-frame	ENST00000239440	ENST00000494626		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000239440	ENST00000411419		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000239440	ENST00000476817		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000239440	ENST00000309035		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000239440	ENST00000334808		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-3CDS	ENST00000512390	ENST00000337195		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-3CDS	ENST00000512390	ENST00000531469		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-3CDS	ENST00000512390	ENST00000494626		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-3CDS	ENST00000512390	ENST00000411419		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-intron	ENST00000512390	ENST00000476817		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-intron	ENST00000512390	ENST00000309035		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5UTR-intron	ENST00000512390	ENST00000334808		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
In-frame	ENST00000513878	ENST00000337195		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
In-frame	ENST00000513878	ENST00000531469		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000513878	ENST00000494626		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
In-frame	ENST00000513878	ENST00000411419		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000513878	ENST00000476817		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000513878	ENST00000309035		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
5CDS-intron	ENST00000513878	ENST00000334808		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ARAP3	chr5	141045991	-	CTBP2	chr10	126678267	-
Frame-shit	ENST00000443236	ENST00000424807		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
Frame-shit	ENST00000443236	ENST00000391750		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
Frame-shit	ENST00000443236	ENST00000346401		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
Frame-shit	ENST00000443236	ENST00000245620		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
Frame-shit	ENST00000443236	ENST00000407860		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5CDS-5UTR	ENST00000443236	ENST00000469273		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5UTR-3CDS	ENST00000597335	ENST00000424807		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5UTR-3CDS	ENST00000597335	ENST00000391750		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5UTR-3CDS	ENST00000597335	ENST00000346401		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5UTR-3CDS	ENST00000597335	ENST00000245620		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5UTR-3CDS	ENST00000597335	ENST00000407860		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
5UTR-5UTR	ENST00000597335	ENST00000469273		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
intron-3CDS	ENST00000388925	ENST00000424807		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
intron-3CDS	ENST00000388925	ENST00000391750		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
intron-3CDS	ENST00000388925	ENST00000346401		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
intron-3CDS	ENST00000388925	ENST00000245620		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
intron-3CDS	ENST00000388925	ENST00000407860		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
intron-5UTR	ENST00000388925	ENST00000469273		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	CPAMD8	chr19	17006987	-	LILRB3	chr19	54722282	-
Frame-shit	ENST00000369981	ENST00000523492		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369981	ENST00000286234		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
5CDS-intron	ENST00000369981	ENST00000518057		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369985	ENST00000523492		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369985	ENST00000286234		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
5CDS-intron	ENST00000369985	ENST00000518057		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369977	ENST00000523492		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369977	ENST00000286234		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
5CDS-intron	ENST00000369977	ENST00000518057		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369975	ENST00000523492		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
Frame-shit	ENST00000369975	ENST00000286234		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
5CDS-intron	ENST00000369975	ENST00000518057		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
intron-3CDS	ENST00000462633	ENST00000523492		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
intron-3CDS	ENST00000462633	ENST00000286234		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
intron-intron	ENST00000462633	ENST00000518057		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	MYO6	chr6	76527381	+	DEPTOR	chr8	120977472	+
5CDS-3UTR	ENST00000256646	ENST00000453618		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	NOTCH2	chr1	120529583	-	SEC22B	chr1	145112373	-
intron-3UTR	ENST00000602566	ENST00000453618		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	NOTCH2	chr1	120529583	-	SEC22B	chr1	145112373	-
intron-3UTR	ENST00000493703	ENST00000453618		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	NOTCH2	chr1	120529583	-	SEC22B	chr1	145112373	-
In-frame	ENST00000538962	ENST00000458258		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
In-frame	ENST00000538962	ENST00000334318		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000538962	ENST00000374257		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000538962	ENST00000374255		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000538962	ENST00000343327		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-intron	ENST00000538962	ENST00000487997		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
In-frame	ENST00000309195	ENST00000458258		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
In-frame	ENST00000309195	ENST00000334318		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000309195	ENST00000374257		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000309195	ENST00000374255		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000309195	ENST00000343327		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-intron	ENST00000309195	ENST00000487997		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
In-frame	ENST00000407693	ENST00000458258		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
In-frame	ENST00000407693	ENST00000334318		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000407693	ENST00000374257		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000407693	ENST00000374255		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000407693	ENST00000343327		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-intron	ENST00000407693	ENST00000487997		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5UTR-3CDS	ENST00000238248	ENST00000458258		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5UTR-3CDS	ENST00000238248	ENST00000334318		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5UTR-5UTR	ENST00000238248	ENST00000374257		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5UTR-5UTR	ENST00000238248	ENST00000374255		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5UTR-5UTR	ENST00000238248	ENST00000343327		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5UTR-intron	ENST00000238248	ENST00000487997		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	PTGR1	chr9	114359597	-	PTBP3	chr9	115060196	-
5CDS-5UTR	ENST00000396020	ENST00000298289		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	RPS29	chr14	50052668	-	RPL36AL	chr14	50085858	-
5CDS-5UTR	ENST00000245458	ENST00000298289		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	RPS29	chr14	50052668	-	RPL36AL	chr14	50085858	-
5UTR-5UTR	ENST00000557111	ENST00000298289		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	RPS29	chr14	50052668	-	RPL36AL	chr14	50085858	-
Frame-shit	ENST00000368533	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
5UTR-3CDS	ENST00000469717	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
Frame-shit	ENST00000330188	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
Frame-shit	ENST00000341485	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
intron-3CDS	ENST00000341372	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
Frame-shit	ENST00000328159	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
intron-3CDS	ENST00000271850	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
intron-3CDS	ENST00000302206	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
Frame-shit	ENST00000368531	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
Frame-shit	ENST00000323144	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
intron-3CDS	ENST00000368530	ENST00000368525		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	TPM3	chr1	154155464	-	C1orf189	chr1	154173064	-
In-frame	ENST00000339282	ENST00000592864		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
5CDS-intron	ENST00000339282	ENST00000360228		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
5CDS-intron	ENST00000339282	ENST00000573710		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
5CDS-intron	ENST00000339282	ENST00000574822		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
In-frame	ENST00000416136	ENST00000592864		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
5CDS-intron	ENST00000416136	ENST00000360228		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
5CDS-intron	ENST00000416136	ENST00000573710		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
5CDS-intron	ENST00000416136	ENST00000574822		TCGA	LD	UCEC	TCGA-AP-A5FX-01A	ZNF564	chr19	12662144	-	CACNA1A	chr19	13630317	-
Frame-shit	ENST00000409074	ENST00000440884		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000409074	ENST00000416682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000409074	ENST00000429436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000409074	ENST00000303622		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000409074	ENST00000216288		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000409074	ENST00000553942		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000409074	ENST00000335102		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
5CDS-3UTR	ENST00000409074	ENST00000561071		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000440884		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000416682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000429436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000303622		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000216288		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000553942		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000556253	ENST00000335102		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
5CDS-3UTR	ENST00000556253	ENST00000561071		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000440884		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000416682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000429436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000303622		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000216288		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000553942		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
Frame-shit	ENST00000247618	ENST00000335102		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
5CDS-3UTR	ENST00000247618	ENST00000561071		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000440884		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000416682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000429436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000303622		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000216288		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000553942		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3CDS	ENST00000477116	ENST00000335102		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
intron-3UTR	ENST00000477116	ENST00000561071		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	APOPT1	chr14	104029461	+	MARK3	chr14	103958114	+
5UTR-intron	ENST00000351989	ENST00000394465		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000351989	ENST00000378342		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000351989	ENST00000394463		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000351989	ENST00000339270		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000351989	ENST00000482104		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000383024	ENST00000394465		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000383024	ENST00000378342		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000383024	ENST00000394463		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000383024	ENST00000339270		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
5UTR-intron	ENST00000383024	ENST00000482104		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
intron-intron	ENST00000407755	ENST00000394465		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
intron-intron	ENST00000407755	ENST00000378342		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
intron-intron	ENST00000407755	ENST00000394463		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
intron-intron	ENST00000407755	ENST00000339270		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
intron-intron	ENST00000407755	ENST00000482104		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	DGCR8	chr22	20067906	+	CCL4L2	chr17	34539178	+
intron-intron	ENST00000465846	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000465846	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000476204	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000474040	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000467155	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
3UTR-intron	ENST00000480872	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000429755	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000492897	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000487849	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000481995	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000460041	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000474324	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000477144	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000466037	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000491264	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000535772		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000344290		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000351559		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000347967		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000262410		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000340799		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000570299		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000334239		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000446361		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000574436		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000431008		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000571987		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000420682		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000415613		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
intron-intron	ENST00000494420	ENST00000576518		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	HOXB-AS3	chr17	46667951	+	MAPT	chr17	44087676	+
Frame-shit	ENST00000371753	ENST00000371746		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	NACC2	chr9	138941482	-	LHX3	chr9	139092599	-
Frame-shit	ENST00000371753	ENST00000371748		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	NACC2	chr9	138941482	-	LHX3	chr9	139092599	-
Frame-shit	ENST00000277554	ENST00000371746		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	NACC2	chr9	138941482	-	LHX3	chr9	139092599	-
Frame-shit	ENST00000277554	ENST00000371748		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	NACC2	chr9	138941482	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000467669	ENST00000371746		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	NACC2	chr9	138941482	-	LHX3	chr9	139092599	-
intron-3CDS	ENST00000467669	ENST00000371748		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	NACC2	chr9	138941482	-	LHX3	chr9	139092599	-
5CDS-5UTR	ENST00000216277	ENST00000555181		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000216277	ENST00000554182		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000216277	ENST00000556095		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000216277	ENST00000438650		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557320	ENST00000555181		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557320	ENST00000554182		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557320	ENST00000556095		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557320	ENST00000438650		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
3UTR-5UTR	ENST00000554130	ENST00000555181		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
3UTR-5UTR	ENST00000554130	ENST00000554182		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
3UTR-5UTR	ENST00000554130	ENST00000556095		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
3UTR-5UTR	ENST00000554130	ENST00000438650		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557471	ENST00000555181		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557471	ENST00000554182		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557471	ENST00000556095		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000557471	ENST00000438650		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000392990	ENST00000555181		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000392990	ENST00000554182		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000392990	ENST00000556095		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
5CDS-5UTR	ENST00000392990	ENST00000438650		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PAPOLA	chr14	96968937	+	GSKIP	chr14	96846025	+
Frame-shit	ENST00000496391	ENST00000536178		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
Frame-shit	ENST00000496391	ENST00000306803		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
3UTR-3CDS	ENST00000482465	ENST00000536178		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
3UTR-3CDS	ENST00000482465	ENST00000306803		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
intron-3CDS	ENST00000462601	ENST00000536178		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
intron-3CDS	ENST00000462601	ENST00000306803		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
Frame-shit	ENST00000397912	ENST00000536178		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
Frame-shit	ENST00000397912	ENST00000306803		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
Frame-shit	ENST00000354783	ENST00000536178		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
Frame-shit	ENST00000354783	ENST00000306803		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PRKRIP1	chr7	102038145	+	SH2B2	chr7	101960798	+
Frame-shit	ENST00000361611	ENST00000357460		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
In-frame	ENST00000361611	ENST00000561013		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
Frame-shit	ENST00000361611	ENST00000431326		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
5CDS-intron	ENST00000361611	ENST00000558278		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
Frame-shit	ENST00000493471	ENST00000357460		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
In-frame	ENST00000493471	ENST00000561013		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
Frame-shit	ENST00000493471	ENST00000431326		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
5CDS-intron	ENST00000493471	ENST00000558278		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
intron-3CDS	ENST00000460922	ENST00000357460		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
intron-3CDS	ENST00000460922	ENST00000561013		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
intron-3CDS	ENST00000460922	ENST00000431326		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
intron-intron	ENST00000460922	ENST00000558278		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
Frame-shit	ENST00000425762	ENST00000357460		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
In-frame	ENST00000425762	ENST00000561013		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
Frame-shit	ENST00000425762	ENST00000431326		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
5CDS-intron	ENST00000425762	ENST00000558278		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	PSMB5	chr14	23502577	-	HOMEZ	chr14	23746396	-
Frame-shit	ENST00000369291	ENST00000369308		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	RNF115	chr1	145650540	-	LIX1L	chr1	145487304	-
In-frame	ENST00000301365	ENST00000396981		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3445816	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000301365	ENST00000572484		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3445816	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000576742	ENST00000396981		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3445816	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000576742	ENST00000572484		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3445816	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000572519	ENST00000396981		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3445816	-	UBE2G1	chr17	4192703	-
In-frame	ENST00000572519	ENST00000572484		TCGA	LD	UCEC	TCGA-AX-A2H4-01A	TRPV3	chr17	3445816	-	UBE2G1	chr17	4192703	-
Frame-shit	ENST00000318607	ENST00000407775		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-5UTR	ENST00000318607	ENST00000520492		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000318607	ENST00000517361		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000318607	ENST00000522296		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000318607	ENST00000378472		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
Frame-shit	ENST00000519004	ENST00000407775		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-5UTR	ENST00000519004	ENST00000520492		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000519004	ENST00000517361		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000519004	ENST00000522296		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000519004	ENST00000378472		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
Frame-shit	ENST00000522387	ENST00000407775		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-5UTR	ENST00000522387	ENST00000520492		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000522387	ENST00000517361		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000522387	ENST00000522296		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
5CDS-intron	ENST00000522387	ENST00000378472		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
intron-3CDS	ENST00000519596	ENST00000407775		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
intron-5UTR	ENST00000519596	ENST00000520492		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519596	ENST00000517361		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519596	ENST00000522296		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
intron-intron	ENST00000519596	ENST00000378472		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	PABPC1	chr8	101733619	-	ZFPM2	chr8	106431372	+
In-frame	ENST00000223073	ENST00000262189		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
In-frame	ENST00000223073	ENST00000355193		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000223073	ENST00000485655		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000223073	ENST00000485241		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
intron-3CDS	ENST00000481788	ENST00000262189		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
intron-3CDS	ENST00000481788	ENST00000355193		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
intron-intron	ENST00000481788	ENST00000485655		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
intron-intron	ENST00000481788	ENST00000485241		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
In-frame	ENST00000415472	ENST00000262189		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
In-frame	ENST00000415472	ENST00000355193		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000415472	ENST00000485655		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
5CDS-intron	ENST00000415472	ENST00000485241		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	RBM28	chr7	127970872	-	KMT2C	chr7	151882716	-
Frame-shit	ENST00000359154	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000359154	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
Frame-shit	ENST00000448661	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000448661	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
Frame-shit	ENST00000569174	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000569174	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
Frame-shit	ENST00000356003	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000356003	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
3UTR-3CDS	ENST00000544162	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
3UTR-intron	ENST00000544162	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
Frame-shit	ENST00000542271	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
5CDS-intron	ENST00000542271	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
intron-3CDS	ENST00000568684	ENST00000261778		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
intron-intron	ENST00000568684	ENST00000561931		TCGA	LD	UCEC	TCGA-AX-A3FV-01A	WWP2	chr16	69876023	+	TANGO6	chr16	69056731	+
Frame-shit	ENST00000435504	ENST00000380649		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5CDS-intron	ENST00000435504	ENST00000457468		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5CDS-intron	ENST00000435504	ENST00000461025		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
In-frame	ENST00000336112	ENST00000380649		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5CDS-intron	ENST00000336112	ENST00000457468		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5CDS-intron	ENST00000336112	ENST00000461025		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5UTR-3CDS	ENST00000272341	ENST00000380649		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000272341	ENST00000457468		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000272341	ENST00000461025		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
intron-3CDS	ENST00000404843	ENST00000380649		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
intron-intron	ENST00000404843	ENST00000457468		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
intron-intron	ENST00000404843	ENST00000461025		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5UTR-3CDS	ENST00000497092	ENST00000380649		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000497092	ENST00000457468		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
5UTR-intron	ENST00000497092	ENST00000461025		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	ASXL2	chr2	26022254	-	HADHA	chr2	26432758	-
In-frame	ENST00000226432	ENST00000509122		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-intron	ENST00000226432	ENST00000512981		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000396448		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000264312		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000381473		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000444354		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000506801		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000425583		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000508293		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000226432	ENST00000513391		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
In-frame	ENST00000513409	ENST00000509122		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-intron	ENST00000513409	ENST00000512981		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000396448		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000264312		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000381473		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000444354		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000506801		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000425583		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000508293		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-3UTR	ENST00000513409	ENST00000513391		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	CWH43	chr4	49052866	+	OCIAD1	chr4	48862742	+
5CDS-5UTR	ENST00000431842	ENST00000301964		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000431842	ENST00000440161		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000431842	ENST00000343450		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-intron	ENST00000431842	ENST00000492635		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000493960	ENST00000301964		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000493960	ENST00000440161		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000493960	ENST00000343450		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-intron	ENST00000493960	ENST00000492635		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000355628	ENST00000301964		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000355628	ENST00000440161		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-5UTR	ENST00000355628	ENST00000343450		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-intron	ENST00000355628	ENST00000492635		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
intron-5UTR	ENST00000485156	ENST00000301964		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
intron-5UTR	ENST00000485156	ENST00000440161		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
intron-5UTR	ENST00000485156	ENST00000343450		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
intron-intron	ENST00000485156	ENST00000492635		TCGA	LD	UCEC	TCGA-AX-A3FW-01A	FAM208A	chr3	56694759	-	TADA3	chr3	9833177	-
5CDS-intron	ENST00000392209	ENST00000398540		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000392209	ENST00000542259		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000392209	ENST00000497757		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000392209	ENST00000478263		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000420822	ENST00000398540		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000420822	ENST00000542259		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000420822	ENST00000497757		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000420822	ENST00000478263		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000295414	ENST00000398540		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000295414	ENST00000542259		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000295414	ENST00000497757		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000295414	ENST00000478263		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000339882	ENST00000398540		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000339882	ENST00000542259		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000339882	ENST00000497757		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
5CDS-intron	ENST00000339882	ENST00000478263		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000468768	ENST00000398540		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000468768	ENST00000542259		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000468768	ENST00000497757		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
intron-intron	ENST00000468768	ENST00000478263		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	CCNYL1	chr2	208607066	+	FRMD4B	chr3	69426270	-
In-frame	ENST00000409792	ENST00000335044		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
In-frame	ENST00000409792	ENST00000265529		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
In-frame	ENST00000409792	ENST00000444589		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
In-frame	ENST00000409792	ENST00000452770		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
5CDS-5UTR	ENST00000409792	ENST00000352910		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
5CDS-5UTR	ENST00000409792	ENST00000487440		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
5CDS-5UTR	ENST00000409792	ENST00000425853		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
5CDS-5UTR	ENST00000409792	ENST00000432493		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
5CDS-5UTR	ENST00000409792	ENST00000425452		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-3CDS	ENST00000492397	ENST00000335044		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-3CDS	ENST00000492397	ENST00000265529		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-3CDS	ENST00000492397	ENST00000444589		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-3CDS	ENST00000492397	ENST00000452770		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-5UTR	ENST00000492397	ENST00000352910		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-5UTR	ENST00000492397	ENST00000487440		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-5UTR	ENST00000492397	ENST00000425853		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-5UTR	ENST00000492397	ENST00000432493		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
intron-5UTR	ENST00000492397	ENST00000425452		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SETD2	chr3	47205344	-	KIF9	chr3	47316980	-
Frame-shit	ENST00000247001	ENST00000402693		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SUGP1	chr19	19407798	-	MEX3D	chr19	1556922	-
In-frame	ENST00000247001	ENST00000388824		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SUGP1	chr19	19407798	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000585763	ENST00000402693		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SUGP1	chr19	19407798	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000585763	ENST00000388824		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SUGP1	chr19	19407798	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000334782	ENST00000402693		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SUGP1	chr19	19407798	-	MEX3D	chr19	1556922	-
intron-3CDS	ENST00000334782	ENST00000388824		TCGA	LD	UCEC	TCGA-AX-A3FX-01A	SUGP1	chr19	19407798	-	MEX3D	chr19	1556922	-
In-frame	ENST00000269214	ENST00000289119		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
In-frame	ENST00000269214	ENST00000580981		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
In-frame	ENST00000269214	ENST00000578270		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
5CDS-intron	ENST00000269214	ENST00000579875		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
intron-3CDS	ENST00000580101	ENST00000289119		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
intron-3CDS	ENST00000580101	ENST00000580981		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
intron-3CDS	ENST00000580101	ENST00000578270		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
intron-intron	ENST00000580101	ENST00000579875		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	ESCO1	chr18	19153275	-	ABHD3	chr18	19239304	-
In-frame	ENST00000563675	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
In-frame	ENST00000563675	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
In-frame	ENST00000563675	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
In-frame	ENST00000563675	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
In-frame	ENST00000563675	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
In-frame	ENST00000563675	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5CDS-intron	ENST00000563675	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5CDS-intron	ENST00000563675	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000541464	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000541464	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000541464	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000541464	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000541464	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000541464	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000541464	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000541464	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000381414	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000381414	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000381414	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000381414	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000381414	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000381414	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000381414	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000381414	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000396229	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000396229	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000396229	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000396229	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000396229	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000396229	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000396229	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000396229	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000542583	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000542583	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000542583	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000542583	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000542583	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-3CDS	ENST00000542583	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000542583	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
5UTR-intron	ENST00000542583	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000219821	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000219821	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000219821	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000219821	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000219821	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000219821	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-intron	ENST00000219821	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-intron	ENST00000219821	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000561503	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000561503	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000561503	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000561503	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000561503	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000561503	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-intron	ENST00000561503	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-intron	ENST00000561503	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000564959	ENST00000438132		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000564959	ENST00000542263		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000564959	ENST00000417362		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000564959	ENST00000251143		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000564959	ENST00000543152		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-3CDS	ENST00000564959	ENST00000448695		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-intron	ENST00000564959	ENST00000544275		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
intron-intron	ENST00000564959	ENST00000538853		TCGA	LD	UCEC	TCGA-AX-A3G1-01A	TMC5	chr16	19441962	+	C16orf62	chr16	19693547	+
In-frame	ENST00000545121	ENST00000413052		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
In-frame	ENST00000545121	ENST00000369645		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-intron	ENST00000545121	ENST00000544796		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-5UTR	ENST00000545121	ENST00000369644		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-3UTR	ENST00000545121	ENST00000468624		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-3UTR	ENST00000545121	ENST00000357443		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
In-frame	ENST00000357172	ENST00000413052		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
In-frame	ENST00000357172	ENST00000369645		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-intron	ENST00000357172	ENST00000544796		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-5UTR	ENST00000357172	ENST00000369644		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-3UTR	ENST00000357172	ENST00000468624		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
5CDS-3UTR	ENST00000357172	ENST00000357443		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
intron-3CDS	ENST00000467362	ENST00000413052		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
intron-3CDS	ENST00000467362	ENST00000369645		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
intron-intron	ENST00000467362	ENST00000544796		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
intron-5UTR	ENST00000467362	ENST00000369644		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
intron-3UTR	ENST00000467362	ENST00000468624		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
intron-3UTR	ENST00000467362	ENST00000357443		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	CEPT1	chr1	111703918	+	MOV10	chr1	113231557	+
Frame-shit	ENST00000312865	ENST00000221543		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	MED25	chr19	50339663	+	TBC1D17	chr19	50390975	+
Frame-shit	ENST00000312865	ENST00000535102		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	MED25	chr19	50339663	+	TBC1D17	chr19	50390975	+
5CDS-intron	ENST00000312865	ENST00000598789		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	MED25	chr19	50339663	+	TBC1D17	chr19	50390975	+
Frame-shit	ENST00000538643	ENST00000221543		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	MED25	chr19	50339663	+	TBC1D17	chr19	50390975	+
Frame-shit	ENST00000538643	ENST00000535102		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	MED25	chr19	50339663	+	TBC1D17	chr19	50390975	+
5CDS-intron	ENST00000538643	ENST00000598789		TCGA	LD	UCEC	TCGA-AX-A3G3-01A	MED25	chr19	50339663	+	TBC1D17	chr19	50390975	+
5CDS-intron	ENST00000303142	ENST00000542515		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000303142	ENST00000279147		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000303142	ENST00000536870		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000303142	ENST00000535657		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000303142	ENST00000539414		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000303142	ENST00000542341		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000378979	ENST00000542515		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000378979	ENST00000279147		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000378979	ENST00000536870		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000378979	ENST00000535657		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000378979	ENST00000539414		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
5CDS-intron	ENST00000378979	ENST00000542341		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	C20orf196	chr20	5753689	+	ORAOV1	chr11	69486587	-
Frame-shit	ENST00000380249	ENST00000369478		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
5CDS-intron	ENST00000380249	ENST00000369477		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
Frame-shit	ENST00000338382	ENST00000369478		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
5CDS-intron	ENST00000338382	ENST00000369477		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
Frame-shit	ENST00000605086	ENST00000369478		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
5CDS-intron	ENST00000605086	ENST00000369477		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
intron-3CDS	ENST00000604828	ENST00000369478		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
intron-intron	ENST00000604828	ENST00000369477		TCGA	LD	UCEC	TCGA-AX-A3G4-01A	FOCAD	chr9	20823114	+	CD2	chr1	117303024	+
Frame-shit	ENST00000367384	ENST00000299767		TCGA	LD	UCEC	TCGA-AX-A3G7-01A	PCMT1	chr6	150114805	+	HSP90B1	chr12	104340634	+
Frame-shit	ENST00000367378	ENST00000299767		TCGA	LD	UCEC	TCGA-AX-A3G7-01A	PCMT1	chr6	150114805	+	HSP90B1	chr12	104340634	+
Frame-shit	ENST00000464889	ENST00000299767		TCGA	LD	UCEC	TCGA-AX-A3G7-01A	PCMT1	chr6	150114805	+	HSP90B1	chr12	104340634	+
Frame-shit	ENST00000367380	ENST00000299767		TCGA	LD	UCEC	TCGA-AX-A3G7-01A	PCMT1	chr6	150114805	+	HSP90B1	chr12	104340634	+
Frame-shit	ENST00000544496	ENST00000299767		TCGA	LD	UCEC	TCGA-AX-A3G7-01A	PCMT1	chr6	150114805	+	HSP90B1	chr12	104340634	+
intron-3CDS	ENST00000480010	ENST00000299767		TCGA	LD	UCEC	TCGA-AX-A3G7-01A	PCMT1	chr6	150114805	+	HSP90B1	chr12	104340634	+
Frame-shit	ENST00000381061	ENST00000325455		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
Frame-shit	ENST00000381061	ENST00000534013		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
Frame-shit	ENST00000381061	ENST00000263463		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
Frame-shit	ENST00000252934	ENST00000325455		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
Frame-shit	ENST00000252934	ENST00000534013		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
Frame-shit	ENST00000252934	ENST00000263463		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
intron-3CDS	ENST00000498009	ENST00000325455		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
intron-3CDS	ENST00000498009	ENST00000534013		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
intron-3CDS	ENST00000498009	ENST00000263463		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
intron-3CDS	ENST00000402380	ENST00000325455		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
intron-3CDS	ENST00000402380	ENST00000534013		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
intron-3CDS	ENST00000402380	ENST00000263463		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	ATXN10	chr22	46136418	+	PGR	chr11	100962607	-
Frame-shit	ENST00000537098	ENST00000337018		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000537098	ENST00000452918		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000537098	ENST00000601879		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000537098	ENST00000600377		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
Frame-shit	ENST00000537098	ENST00000456085		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
5CDS-intron	ENST00000537098	ENST00000598202		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000539778	ENST00000337018		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000539778	ENST00000452918		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000539778	ENST00000601879		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000539778	ENST00000600377		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000539778	ENST00000456085		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-intron	ENST00000539778	ENST00000598202		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000566513	ENST00000337018		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000566513	ENST00000452918		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000566513	ENST00000601879		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000566513	ENST00000600377		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000566513	ENST00000456085		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-intron	ENST00000566513	ENST00000598202		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398040	ENST00000337018		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398040	ENST00000452918		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398040	ENST00000601879		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398040	ENST00000600377		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-3CDS	ENST00000398040	ENST00000456085		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
intron-intron	ENST00000398040	ENST00000598202		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	CMIP	chr16	81479146	+	SUGP2	chr19	19121151	-
5UTR-3CDS	ENST00000064778	ENST00000334956		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000064778	ENST00000539723		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000064778	ENST00000550549		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000064778	ENST00000538608		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000064778	ENST00000526746		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000450446	ENST00000334956		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000450446	ENST00000539723		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000450446	ENST00000550549		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000450446	ENST00000538608		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000450446	ENST00000526746		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000356467	ENST00000334956		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000356467	ENST00000539723		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-3CDS	ENST00000356467	ENST00000550549		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000356467	ENST00000538608		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-5UTR	ENST00000356467	ENST00000526746		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	FAM168A	chr11	73308968	-	PARVA	chr11	12495292	+
5UTR-intron	ENST00000355765	ENST00000556036		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	PRPF39	chr14	45553452	+	FANCM	chr14	45665375	+
5UTR-intron	ENST00000355765	ENST00000267430		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	PRPF39	chr14	45553452	+	FANCM	chr14	45665375	+
5UTR-intron	ENST00000355765	ENST00000542564		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	PRPF39	chr14	45553452	+	FANCM	chr14	45665375	+
5UTR-intron	ENST00000355765	ENST00000555013		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	PRPF39	chr14	45553452	+	FANCM	chr14	45665375	+
Frame-shit	ENST00000260385	ENST00000295958		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
Frame-shit	ENST00000260385	ENST00000511809		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
5CDS-5UTR	ENST00000260385	ENST00000510628		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
Frame-shit	ENST00000338376	ENST00000295958		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
Frame-shit	ENST00000338376	ENST00000511809		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
5CDS-5UTR	ENST00000338376	ENST00000510628		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
5UTR-3CDS	ENST00000558560	ENST00000295958		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
5UTR-3CDS	ENST00000558560	ENST00000511809		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
5UTR-5UTR	ENST00000558560	ENST00000510628		TCGA	LD	UCEC	TCGA-AX-A3GI-01A	RMDN3	chr15	41043624	-	SMIM14	chr4	39574083	-
Frame-shit	ENST00000534328	ENST00000373382		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000534328	ENST00000263559		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000534328	ENST00000395098		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000534328	ENST00000546041		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000534328	ENST00000490696		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000534328	ENST00000541711		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000534328	ENST00000489794		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000332231	ENST00000373382		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000332231	ENST00000263559		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000332231	ENST00000395098		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000332231	ENST00000546041		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000332231	ENST00000490696		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000332231	ENST00000541711		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000332231	ENST00000489794		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000448903	ENST00000373382		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000448903	ENST00000263559		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000448903	ENST00000395098		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000448903	ENST00000546041		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000448903	ENST00000490696		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000448903	ENST00000541711		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
5CDS-intron	ENST00000448903	ENST00000489794		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000525891	ENST00000373382		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000525891	ENST00000263559		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000525891	ENST00000395098		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-3CDS	ENST00000525891	ENST00000546041		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000525891	ENST00000490696		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000525891	ENST00000541711		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
intron-intron	ENST00000525891	ENST00000489794		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	AP2A2	chr11	959505	+	VPS26A	chr10	70915568	+
Frame-shit	ENST00000415229	ENST00000340437		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000415229	ENST00000394888		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000415229	ENST00000439958		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000415229	ENST00000494016		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000415229	ENST00000448745		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000415229	ENST00000541963		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000535727	ENST00000340437		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000535727	ENST00000394888		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000535727	ENST00000439958		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000535727	ENST00000494016		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000535727	ENST00000448745		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000535727	ENST00000541963		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000301776	ENST00000340437		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000301776	ENST00000394888		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
Frame-shit	ENST00000301776	ENST00000439958		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000301776	ENST00000494016		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000301776	ENST00000448745		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000301776	ENST00000541963		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
3UTR-3CDS	ENST00000528206	ENST00000340437		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
3UTR-3CDS	ENST00000528206	ENST00000394888		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
3UTR-3CDS	ENST00000528206	ENST00000439958		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
3UTR-intron	ENST00000528206	ENST00000494016		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
3UTR-intron	ENST00000528206	ENST00000448745		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
3UTR-intron	ENST00000528206	ENST00000541963		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	ASRGL1	chr11	62124616	+	CPSF7	chr11	61189080	-
5CDS-intron	ENST00000356607	ENST00000377093		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000263934		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000377086		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000377083		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000377081		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5CDS-intron	ENST00000356607	ENST00000465635		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377093		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000263934		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377086		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377083		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000377081		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
5UTR-intron	ENST00000538836	ENST00000465635		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377093		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000263934		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377086		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377083		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000377081		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000492696	ENST00000465635		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	PEX14	chr1	10535059	+	KIF1B	chr1	10434374	+
intron-intron	ENST00000561311	ENST00000559763		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000561311	ENST00000330964		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000561311	ENST00000462430		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000561311	ENST00000455271		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000561311	ENST00000411926		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000561311	ENST00000439025		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000306829	ENST00000559763		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000306829	ENST00000330964		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000306829	ENST00000462430		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000306829	ENST00000455271		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000306829	ENST00000411926		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000306829	ENST00000439025		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000559908	ENST00000559763		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000559908	ENST00000330964		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000559908	ENST00000462430		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000559908	ENST00000455271		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000559908	ENST00000411926		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000559908	ENST00000439025		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000472902	ENST00000559763		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000472902	ENST00000330964		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-intron	ENST00000472902	ENST00000462430		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000472902	ENST00000455271		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000472902	ENST00000411926		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
intron-5UTR	ENST00000472902	ENST00000439025		TCGA	LD	UCEC	TCGA-B5-A0JN-01A	TLN2	chr15	62682884	+	RPS27L	chr15	63448720	-
5CDS-intron	ENST00000377748	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377748	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377748	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377748	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377748	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377748	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377732	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377732	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377732	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377732	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377732	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377732	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000400915	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000400915	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000400915	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000400915	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000400915	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000400915	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377740	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377740	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377740	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377740	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377740	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000377740	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000377737	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000377737	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000377737	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000377737	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000377737	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000377737	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000537245	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000537245	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000537245	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000537245	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000537245	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5CDS-intron	ENST00000537245	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000544978	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000544978	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000544978	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000544978	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000544978	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
5UTR-intron	ENST00000544978	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000400913	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000400913	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000400913	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000400913	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000400913	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000400913	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000340850	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000340850	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000340850	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000340850	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000340850	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000340850	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377725	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377725	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377725	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377725	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377725	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377725	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377728	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377728	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377728	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377728	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377728	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000377728	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000535355	ENST00000465508		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000535355	ENST00000349363		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000535355	ENST00000377577		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000535355	ENST00000294401		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000535355	ENST00000542246		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
intron-intron	ENST00000535355	ENST00000377573		TCGA	LD	UCEC	TCGA-B5-A0K9-01A	PLEKHG5	chr1	6556553	-	DNAJC11	chr1	6714347	-
Frame-shit	ENST00000318003	ENST00000431365		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14024451	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000318003	ENST00000585987		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14024451	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000589606	ENST00000431365		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14024451	+	RLN3	chr19	14141522	+
Frame-shit	ENST00000589606	ENST00000585987		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	CC2D1A	chr19	14024451	+	RLN3	chr19	14141522	+
5UTR-3CDS	ENST00000487070	ENST00000304760		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	KANSL3	chr2	97267380	-	SHE	chr1	154471714	-
Frame-shit	ENST00000431828	ENST00000304760		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	KANSL3	chr2	97267380	-	SHE	chr1	154471714	-
In-frame	ENST00000599854	ENST00000304760		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	KANSL3	chr2	97267380	-	SHE	chr1	154471714	-
intron-3CDS	ENST00000441706	ENST00000304760		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	KANSL3	chr2	97267380	-	SHE	chr1	154471714	-
Frame-shit	ENST00000440133	ENST00000304760		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	KANSL3	chr2	97267380	-	SHE	chr1	154471714	-
intron-3CDS	ENST00000435669	ENST00000304760		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	KANSL3	chr2	97267380	-	SHE	chr1	154471714	-
5CDS-intron	ENST00000265537	ENST00000464524		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000265537	ENST00000418611		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000265537	ENST00000389061		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000265537	ENST00000541314		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000415258	ENST00000464524		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000415258	ENST00000418611		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000415258	ENST00000389061		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000415258	ENST00000541314		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000414984	ENST00000464524		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000414984	ENST00000418611		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000414984	ENST00000389061		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-intron	ENST00000414984	ENST00000541314		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
intron-intron	ENST00000467936	ENST00000464524		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
intron-intron	ENST00000467936	ENST00000418611		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
intron-intron	ENST00000467936	ENST00000389061		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
intron-intron	ENST00000467936	ENST00000541314		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	LARS2	chr3	45500378	+	SACM1L	chr3	45754629	+
5CDS-3UTR	ENST00000499023	ENST00000467933		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	PLRG1	chr4	155471452	-	SRGAP2B	chr1	144013901	-
intron-3UTR	ENST00000393905	ENST00000467933		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	PLRG1	chr4	155471452	-	SRGAP2B	chr1	144013901	-
5CDS-3UTR	ENST00000302078	ENST00000467933		TCGA	LD	UCEC	TCGA-B5-A1MS-01B	PLRG1	chr4	155471452	-	SRGAP2B	chr1	144013901	-
5UTR-3CDS	ENST00000311028	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000311028	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000311028	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000311028	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-3CDS	ENST00000395923	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000395923	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000395923	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000395923	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-3CDS	ENST00000220931	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000220931	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000220931	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000220931	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-3CDS	ENST00000521599	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000521599	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000521599	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
5UTR-intron	ENST00000521599	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-3CDS	ENST00000522951	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000522951	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000522951	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000522951	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-3CDS	ENST00000519508	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000519508	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000519508	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000519508	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-3CDS	ENST00000521371	ENST00000251810		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000521371	ENST00000395912		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000521371	ENST00000519317		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-intron	ENST00000521371	ENST00000519962		TCGA	LD	UCEC	TCGA-B5-A1MW-01A	NCALD	chr8	102928037	-	RRM2B	chr8	103244532	-
intron-5UTR	ENST00000448526	ENST00000338270		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	CDKN1A	chr6	36646575	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000244741	ENST00000338270		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	CDKN1A	chr6	36646575	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000405375	ENST00000338270		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	CDKN1A	chr6	36646575	+	ERAS	chrX	48687491	+
5UTR-5UTR	ENST00000373711	ENST00000338270		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	CDKN1A	chr6	36646575	+	ERAS	chrX	48687491	+
3UTR-5UTR	ENST00000478800	ENST00000338270		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	CDKN1A	chr6	36646575	+	ERAS	chrX	48687491	+
intron-3CDS	ENST00000525102	ENST00000404233		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000525102	ENST00000529972		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000525102	ENST00000525859		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-intron	ENST00000525102	ENST00000543287		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000357590	ENST00000404233		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000357590	ENST00000529972		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000357590	ENST00000525859		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-intron	ENST00000357590	ENST00000543287		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000545985	ENST00000404233		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000545985	ENST00000529972		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000545985	ENST00000525859		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-intron	ENST00000545985	ENST00000543287		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000538950	ENST00000404233		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000538950	ENST00000529972		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000538950	ENST00000525859		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-intron	ENST00000538950	ENST00000543287		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000330775	ENST00000404233		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000330775	ENST00000529972		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-3CDS	ENST00000330775	ENST00000525859		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
intron-intron	ENST00000330775	ENST00000543287		TCGA	LD	UCEC	TCGA-B5-A3FB-01A	SLC37A4	chr11	118900896	-	HYOU1	chr11	118919027	-
Frame-shit	ENST00000232375	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000232375	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000536104	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000536104	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000416568	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000416568	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000541519	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000541519	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000383734	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000383734	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5UTR-3CDS	ENST00000490115	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5UTR-intron	ENST00000490115	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000545984	ENST00000203407		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
5CDS-intron	ENST00000545984	ENST00000493806		TCGA	LD	UCEC	TCGA-B5-A3FD-01A	PFKFB4	chr3	48577130	-	UQCRC1	chr3	48638900	-
Frame-shit	ENST00000374820	ENST00000371168		TCGA	LD	UCEC	TCGA-B5-A3FH-01A	PIGU	chr20	33244984	-	C20orf85	chr20	56728600	+
Frame-shit	ENST00000452740	ENST00000371168		TCGA	LD	UCEC	TCGA-B5-A3FH-01A	PIGU	chr20	33244984	-	C20orf85	chr20	56728600	+
intron-3CDS	ENST00000480175	ENST00000371168		TCGA	LD	UCEC	TCGA-B5-A3FH-01A	PIGU	chr20	33244984	-	C20orf85	chr20	56728600	+
Frame-shit	ENST00000584601	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584601	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000406381	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000406381	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000541774	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000541774	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000445658	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000445658	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000540147	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000540147	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000584450	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000584450	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000269571	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
5CDS-intron	ENST00000269571	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-3CDS	ENST00000578199	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000578199	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-3CDS	ENST00000540042	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000540042	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-3CDS	ENST00000584888	ENST00000346872		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000394189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000439167		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000535189		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000377944		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000377945		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000377952		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000377958		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000346243		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000350532		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000351680		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000467757		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000439016		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
intron-intron	ENST00000584888	ENST00000583368		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	ERBB2	chr17	37879913	+	IKZF3	chr17	37944627	-
Frame-shit	ENST00000348520	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000348520	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000348520	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000348520	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000348520	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000348520	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000348520	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000348520	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000380038	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000380038	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000380038	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000380038	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000380038	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000380038	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000380038	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000380038	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000389744	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000389744	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000389744	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000389744	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000389744	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000389744	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000389744	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000389744	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557575	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557575	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557575	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557575	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557575	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000557575	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000557575	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000557575	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000553286	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000553286	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000553286	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000553286	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000553286	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000553286	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000553286	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000553286	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000347839	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000347839	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000347839	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000347839	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000347839	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000347839	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000347839	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000347839	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000555836	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000555836	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000555836	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000555836	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000555836	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000555836	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000555836	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000555836	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000334553	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000334553	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000334553	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000334553	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000334553	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000334553	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000334553	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000334553	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000246489	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000246489	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000246489	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000246489	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000246489	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000246489	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000246489	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000246489	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557450	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557450	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557450	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557450	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000557450	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000557450	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000557450	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000557450	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000554280	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000554280	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000554280	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000554280	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000554280	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000554280	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000554280	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000554280	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000452929	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000452929	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000452929	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000452929	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000452929	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000452929	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000452929	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000452929	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000445352	ENST00000440884		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000445352	ENST00000416682		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000445352	ENST00000429436		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000445352	ENST00000303622		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
Frame-shit	ENST00000445352	ENST00000216288		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000445352	ENST00000553942		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
In-frame	ENST00000445352	ENST00000335102		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-3UTR	ENST00000445352	ENST00000561071		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	KLC1	chr14	104124113	+	MARK3	chr14	103969219	+
5CDS-intron	ENST00000421905	ENST00000487394		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
5CDS-intron	ENST00000421905	ENST00000164227		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
5CDS-intron	ENST00000221462	ENST00000487394		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
5CDS-intron	ENST00000221462	ENST00000164227		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
3UTR-intron	ENST00000496125	ENST00000487394		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
3UTR-intron	ENST00000496125	ENST00000164227		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	PPP1R37	chr19	45596785	+	BCL3	chr19	45254484	+
Frame-shit	ENST00000413379	ENST00000361722		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	TBKBP1	chr17	45785760	+
Frame-shit	ENST00000540850	ENST00000361722		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	TBKBP1	chr17	45785760	+
intron-3CDS	ENST00000598840	ENST00000361722		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	TBKBP1	chr17	45785760	+
Frame-shit	ENST00000270225	ENST00000361722		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	TBKBP1	chr17	45785760	+
Frame-shit	ENST00000392776	ENST00000361722		TCGA	LD	UCEC	TCGA-B5-A3S1-01A	SAE1	chr19	47658470	+	TBKBP1	chr17	45785760	+
intron-3CDS	ENST00000393599	ENST00000398174		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
intron-3CDS	ENST00000393599	ENST00000340852		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
intron-3CDS	ENST00000393599	ENST00000335574		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
intron-3CDS	ENST00000393599	ENST00000376127		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
intron-3UTR	ENST00000393599	ENST00000492709		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000335766	ENST00000398174		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000335766	ENST00000340852		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000335766	ENST00000335574		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
5UTR-3CDS	ENST00000335766	ENST00000376127		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
5UTR-3UTR	ENST00000335766	ENST00000492709		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	CDKN2D	chr19	10679623	-	HM13	chr20	30154013	+
5CDS-3UTR	ENST00000403681	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000403681	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000403681	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541363	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541363	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000541363	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000393577	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000393577	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000393577	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000393578	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000393578	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000393578	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000425208	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000425208	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000425208	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000536545	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000536545	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000536545	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000354636	ENST00000593699		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000354636	ENST00000372499		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
5CDS-3UTR	ENST00000354636	ENST00000496424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HMGA2	chr12	66232349	+	C10orf11	chr10	78316967	+
intron-3CDS	ENST00000472863	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000472863	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-intron	ENST00000472863	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000498678	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000498678	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-intron	ENST00000498678	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000460160	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000460160	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-intron	ENST00000460160	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000476342	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000476342	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-intron	ENST00000476342	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000552000	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000552000	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-intron	ENST00000552000	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000470495	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-3CDS	ENST00000470495	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
intron-intron	ENST00000470495	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000311626	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000311626	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-intron	ENST00000311626	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
Frame-shit	ENST00000490677	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
Frame-shit	ENST00000490677	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5CDS-intron	ENST00000490677	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000485909	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000485909	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-intron	ENST00000485909	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000489475	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-3CDS	ENST00000489475	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5UTR-intron	ENST00000489475	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
Frame-shit	ENST00000465120	ENST00000188790		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
Frame-shit	ENST00000465120	ENST00000443424		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
5CDS-intron	ENST00000465120	ENST00000493182		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	HOXB3	chr17	46651199	-	FAP	chr2	163046264	-
Frame-shit	ENST00000341441	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000341441	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000378576	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000378576	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000416162	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000416162	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000393187	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000393187	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000223215	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
Frame-shit	ENST00000223215	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
intron-3CDS	ENST00000437945	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
intron-3CDS	ENST00000437945	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
intron-3CDS	ENST00000462132	ENST00000249344		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
intron-3CDS	ENST00000462132	ENST00000435494		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	MEST	chr7	130143837	+	STRIP2	chr7	129120626	+
5UTR-3CDS	ENST00000422437	ENST00000449264		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000445232		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000376122		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000420425		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000448781		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000383496		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000412275		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5UTR-intron	ENST00000422437	ENST00000443707		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-3CDS	ENST00000453656	ENST00000449264		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000445232		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000376122		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000420425		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000448781		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000383496		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000412275		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
intron-intron	ENST00000453656	ENST00000443707		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	PPT2-EGFL8	chr6	32122181	+	TNF	chr6	31544311	+
5CDS-3UTR	ENST00000393167	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000393167	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393167	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393167	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393167	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393167	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000409842	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000409842	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409842	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409842	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409842	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409842	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000393165	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000393165	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393165	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393165	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393165	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393165	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000393166	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000393166	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393166	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393166	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393166	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000393166	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000409875	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000409875	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409875	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409875	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409875	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000409875	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000376439	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-3UTR	ENST00000376439	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000376439	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000376439	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000376439	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
5CDS-intron	ENST00000376439	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
intron-3UTR	ENST00000478880	ENST00000465812		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
intron-3UTR	ENST00000478880	ENST00000409052		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000478880	ENST00000361779		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000478880	ENST00000259206		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000478880	ENST00000354115		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
intron-intron	ENST00000478880	ENST00000409930		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	RABL2A	chr2	114386290	+	IL1RN	chr2	113868693	+
Frame-shit	ENST00000358794	ENST00000341307		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000358794	ENST00000356000		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000358794	ENST00000538995		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000358794	ENST00000377819		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000358794	ENST00000339997		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000358794	ENST00000540798		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000358794	ENST00000537981		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000358794	ENST00000354497		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000305218	ENST00000341307		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000305218	ENST00000356000		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000305218	ENST00000538995		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000305218	ENST00000377819		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000305218	ENST00000339997		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000305218	ENST00000540798		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000305218	ENST00000537981		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000305218	ENST00000354497		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000538945	ENST00000341307		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000538945	ENST00000356000		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538945	ENST00000538995		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538945	ENST00000377819		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538945	ENST00000339997		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538945	ENST00000540798		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538945	ENST00000537981		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
5CDS-intron	ENST00000538945	ENST00000354497		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000543847	ENST00000341307		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000543847	ENST00000356000		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000543847	ENST00000538995		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000543847	ENST00000377819		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000543847	ENST00000339997		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000543847	ENST00000540798		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000543847	ENST00000537981		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000543847	ENST00000354497		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000540501	ENST00000341307		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-3CDS	ENST00000540501	ENST00000356000		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000540501	ENST00000538995		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000540501	ENST00000377819		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000540501	ENST00000339997		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000540501	ENST00000540798		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000540501	ENST00000537981		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
intron-intron	ENST00000540501	ENST00000354497		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	STIP1	chr11	63967765	+	RTN3	chr11	63517463	+
Frame-shit	ENST00000367723	ENST00000354725		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000367723	ENST00000467238		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
Frame-shit	ENST00000608151	ENST00000354725		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000608151	ENST00000467238		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
Frame-shit	ENST00000610051	ENST00000354725		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000610051	ENST00000467238		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
Frame-shit	ENST00000263688	ENST00000354725		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
5CDS-intron	ENST00000263688	ENST00000467238		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	SUCO	chr1	172502637	+	SND1	chr7	127714554	+
intron-3CDS	ENST00000359486	ENST00000246792		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	TCF20	chr22	42739485	-	RRAS	chr19	50140183	-
intron-3CDS	ENST00000335626	ENST00000246792		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	TCF20	chr22	42739485	-	RRAS	chr19	50140183	-
intron-3CDS	ENST00000404876	ENST00000246792		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	TCF20	chr22	42739485	-	RRAS	chr19	50140183	-
3UTR-3CDS	ENST00000494757	ENST00000329021		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	WIPF2	chr17	38375744	+	NFAM1	chr22	42807742	-
5UTR-3CDS	ENST00000323571	ENST00000329021		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	WIPF2	chr17	38375744	+	NFAM1	chr22	42807742	-
5UTR-3CDS	ENST00000585043	ENST00000329021		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	WIPF2	chr17	38375744	+	NFAM1	chr22	42807742	-
5UTR-3CDS	ENST00000394103	ENST00000329021		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	WIPF2	chr17	38375744	+	NFAM1	chr22	42807742	-
5UTR-3CDS	ENST00000536600	ENST00000329021		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	WIPF2	chr17	38375744	+	NFAM1	chr22	42807742	-
intron-3CDS	ENST00000583130	ENST00000329021		TCGA	LD	UCEC	TCGA-B5-A5OD-01A	WIPF2	chr17	38375744	+	NFAM1	chr22	42807742	-
Frame-shit	ENST00000327064	ENST00000392197		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	CARM1	chr19	10982598	+	ZBTB32	chr19	36206659	+
5CDS-intron	ENST00000327064	ENST00000442282		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	CARM1	chr19	10982598	+	ZBTB32	chr19	36206659	+
5CDS-intron	ENST00000327064	ENST00000262630		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	CARM1	chr19	10982598	+	ZBTB32	chr19	36206659	+
Frame-shit	ENST00000344150	ENST00000392197		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	CARM1	chr19	10982598	+	ZBTB32	chr19	36206659	+
5CDS-intron	ENST00000344150	ENST00000442282		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	CARM1	chr19	10982598	+	ZBTB32	chr19	36206659	+
5CDS-intron	ENST00000344150	ENST00000262630		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	CARM1	chr19	10982598	+	ZBTB32	chr19	36206659	+
In-frame	ENST00000263390	ENST00000397104		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	MED26	chr19	16738683	-	ZNF99	chr19	22952126	-
In-frame	ENST00000263390	ENST00000596209		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	MED26	chr19	16738683	-	ZNF99	chr19	22952126	-
5UTR-3CDS	ENST00000358495	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000358495	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000358495	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000358495	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000430095	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000430095	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000430095	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000430095	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000539046	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000539046	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000539046	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000539046	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000536177	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000536177	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000536177	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000536177	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000544742	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000544742	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000544742	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000544742	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000541619	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3CDS	ENST00000541619	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000541619	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
5UTR-3UTR	ENST00000541619	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000535376	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000535376	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000535376	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000535376	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000545564	ENST00000535829		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3CDS	ENST00000545564	ENST00000357529		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000545564	ENST00000299673		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000545564	ENST00000538135		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	RAD52	chr12	1058768	-	RIMKLB	chr12	8925917	+
intron-3UTR	ENST00000343587	ENST00000495140		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STX10	chr19	13259843	-	C3P1	chr19	10160672	+
5CDS-3UTR	ENST00000242770	ENST00000495140		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STX10	chr19	13259843	-	C3P1	chr19	10160672	+
5CDS-3UTR	ENST00000589083	ENST00000495140		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STX10	chr19	13259843	-	C3P1	chr19	10160672	+
5CDS-3UTR	ENST00000587230	ENST00000495140		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STX10	chr19	13259843	-	C3P1	chr19	10160672	+
In-frame	ENST00000373302	ENST00000300417		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373302	ENST00000373324		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373302	ENST00000323301		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373302	ENST00000373322		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
5CDS-3UTR	ENST00000373302	ENST00000483302		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373299	ENST00000300417		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373299	ENST00000373324		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373299	ENST00000323301		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000373299	ENST00000373322		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
5CDS-3UTR	ENST00000373299	ENST00000483302		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
intron-3CDS	ENST00000481942	ENST00000300417		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
intron-3CDS	ENST00000481942	ENST00000373324		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
intron-3CDS	ENST00000481942	ENST00000323301		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
intron-3CDS	ENST00000481942	ENST00000373322		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
intron-3UTR	ENST00000481942	ENST00000483302		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	STXBP1	chr9	130439032	+	LRSAM1	chr9	130242118	+
In-frame	ENST00000040877	ENST00000389794		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
In-frame	ENST00000040877	ENST00000389793		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
5CDS-intron	ENST00000040877	ENST00000536965		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
5CDS-5UTR	ENST00000040877	ENST00000473037		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
intron-3CDS	ENST00000483404	ENST00000389794		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
intron-3CDS	ENST00000483404	ENST00000389793		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
intron-intron	ENST00000483404	ENST00000536965		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
intron-5UTR	ENST00000483404	ENST00000473037		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	TARBP1	chr1	234582549	-	LYST	chr1	235827921	-
intron-3UTR	ENST00000594022	ENST00000540746		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
intron-3UTR	ENST00000594022	ENST00000544216		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
intron-3UTR	ENST00000594022	ENST00000433627		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-3UTR	ENST00000358491	ENST00000540746		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-3UTR	ENST00000358491	ENST00000544216		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-3UTR	ENST00000358491	ENST00000433627		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-3UTR	ENST00000597078	ENST00000540746		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-3UTR	ENST00000597078	ENST00000544216		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-3UTR	ENST00000597078	ENST00000433627		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF429	chr19	21688576	+	LSM14A	chr19	34718270	+
5CDS-5UTR	ENST00000341191	ENST00000222345		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF823	chr19	11849632	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000341191	ENST00000476317		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF823	chr19	11849632	-	SIPA1L3	chr19	38519729	+
5UTR-5UTR	ENST00000545749	ENST00000222345		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF823	chr19	11849632	-	SIPA1L3	chr19	38519729	+
5UTR-3UTR	ENST00000545749	ENST00000476317		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF823	chr19	11849632	-	SIPA1L3	chr19	38519729	+
5CDS-5UTR	ENST00000440527	ENST00000222345		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF823	chr19	11849632	-	SIPA1L3	chr19	38519729	+
5CDS-3UTR	ENST00000440527	ENST00000476317		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZNF823	chr19	11849632	-	SIPA1L3	chr19	38519729	+
Frame-shit	ENST00000254323	ENST00000588262		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
Frame-shit	ENST00000254323	ENST00000252530		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5CDS-intron	ENST00000254323	ENST00000343358		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5CDS-intron	ENST00000254323	ENST00000585954		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5UTR-3CDS	ENST00000440752	ENST00000588262		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5UTR-3CDS	ENST00000440752	ENST00000252530		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5UTR-intron	ENST00000440752	ENST00000343358		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5UTR-intron	ENST00000440752	ENST00000585954		TCGA	LD	UCEC	TCGA-B5-A5OE-01A	ZSWIM4	chr19	13915915	+	FAM98C	chr19	38893775	+
5CDS-3UTR	ENST00000358432	ENST00000487096		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-3UTR	ENST00000358432	ENST00000360840		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-3UTR	ENST00000358432	ENST00000605337		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-intron	ENST00000358432	ENST00000336230		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-3UTR	ENST00000461614	ENST00000487096		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-3UTR	ENST00000461614	ENST00000360840		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-3UTR	ENST00000461614	ENST00000605337		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5CDS-intron	ENST00000461614	ENST00000336230		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	EPHA2	chr1	16474873	-	MRPL37	chr1	54670691	+
5UTR-3CDS	ENST00000252577	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3CDS	ENST00000252577	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3UTR	ENST00000252577	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-intron	ENST00000252577	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3CDS	ENST00000360315	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3CDS	ENST00000360315	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3UTR	ENST00000360315	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-intron	ENST00000360315	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3CDS	ENST00000537887	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3CDS	ENST00000537887	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-3UTR	ENST00000537887	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5UTR-intron	ENST00000537887	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000404158	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000404158	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3UTR	ENST00000404158	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-intron	ENST00000404158	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000358713	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000358713	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3UTR	ENST00000358713	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-intron	ENST00000358713	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000429563	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000429563	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3UTR	ENST00000429563	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-intron	ENST00000429563	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000473184	ENST00000348495		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3CDS	ENST00000473184	ENST00000270061		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-3UTR	ENST00000473184	ENST00000598159		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
intron-intron	ENST00000473184	ENST00000599699		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	GATAD2A	chr19	19496947	+	SSBP4	chr19	18538161	+
5CDS-intron	ENST00000371208	ENST00000249760		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000371208	ENST00000490194		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000371208	ENST00000487418		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000371208	ENST00000479013		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
3UTR-intron	ENST00000465876	ENST00000249760		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
3UTR-intron	ENST00000465876	ENST00000490194		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
3UTR-intron	ENST00000465876	ENST00000487418		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
3UTR-intron	ENST00000465876	ENST00000479013		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000395561	ENST00000249760		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000395561	ENST00000490194		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000395561	ENST00000487418		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000395561	ENST00000479013		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	HOOK1	chr1	60287615	+	IVD	chr15	40727616	+
5CDS-5UTR	ENST00000341695	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000341695	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000341695	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000348706	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000348706	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000348706	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000432483	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000432483	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000432483	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000354147	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000354147	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000354147	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000380004	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000380004	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000380004	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000357415	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000357415	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
5CDS-5UTR	ENST00000357415	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
intron-5UTR	ENST00000509426	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
intron-5UTR	ENST00000509426	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
intron-5UTR	ENST00000509426	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
intron-5UTR	ENST00000310267	ENST00000394735		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
intron-5UTR	ENST00000310267	ENST00000340139		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
intron-5UTR	ENST00000310267	ENST00000451321		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPA2	chr4	106307724	-	INTS12	chr4	106621171	-
Frame-shit	ENST00000322088	ENST00000321287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000322088	ENST00000403906		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000322088	ENST00000601151		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000322088	ENST00000327920		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000444322	ENST00000321287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000444322	ENST00000403906		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000444322	ENST00000601151		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000444322	ENST00000327920		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000477989	ENST00000321287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000477989	ENST00000403906		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000477989	ENST00000601151		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000477989	ENST00000327920		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000462990	ENST00000321287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000462990	ENST00000403906		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000462990	ENST00000601151		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
Frame-shit	ENST00000462990	ENST00000327920		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000473455	ENST00000321287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000473455	ENST00000403906		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000473455	ENST00000601151		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
intron-3CDS	ENST00000473455	ENST00000327920		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	PPP2R1A	chr19	52729061	+	ZNF610	chr19	52868951	+
5CDS-3UTR	ENST00000228284	ENST00000548052		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
5CDS-intron	ENST00000228284	ENST00000551281		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
5CDS-intron	ENST00000228284	ENST00000228476		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
5CDS-3UTR	ENST00000431469	ENST00000548052		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
5CDS-intron	ENST00000431469	ENST00000551281		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
5CDS-intron	ENST00000431469	ENST00000228476		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
intron-3UTR	ENST00000552221	ENST00000548052		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
intron-intron	ENST00000552221	ENST00000551281		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
intron-intron	ENST00000552221	ENST00000228476		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
intron-3UTR	ENST00000546611	ENST00000548052		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
intron-intron	ENST00000546611	ENST00000551281		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
intron-intron	ENST00000546611	ENST00000228476		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SART3	chr12	108938915	-	DAO	chr12	109270446	+
In-frame	ENST00000374759	ENST00000313056		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
In-frame	ENST00000374759	ENST00000329197		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
5CDS-intron	ENST00000374759	ENST00000578287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
In-frame	ENST00000288439	ENST00000313056		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
In-frame	ENST00000288439	ENST00000329197		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
5CDS-intron	ENST00000288439	ENST00000578287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
5UTR-3CDS	ENST00000546352	ENST00000313056		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
5UTR-3CDS	ENST00000546352	ENST00000329197		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
5UTR-intron	ENST00000546352	ENST00000578287		TCGA	LD	UCEC	TCGA-BG-A3PP-01A	SLC38A10	chr17	79244718	-	OGFOD3	chr17	80356195	-
5UTR-3CDS	ENST00000311028	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-3CDS	ENST00000311028	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000311028	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000311028	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000311028	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-3CDS	ENST00000395923	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-3CDS	ENST00000395923	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000395923	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000395923	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000395923	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000220931	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000220931	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000220931	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000220931	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000220931	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-3CDS	ENST00000521599	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-3CDS	ENST00000521599	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000521599	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000521599	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-intron	ENST00000521599	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000522951	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000522951	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000522951	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000522951	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000522951	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000519508	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000519508	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000519508	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000519508	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000519508	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000521371	ENST00000520539		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-3CDS	ENST00000521371	ENST00000220959		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000521371	ENST00000518205		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000521371	ENST00000521922		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
intron-intron	ENST00000521371	ENST00000519528		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	NCALD	chr8	103032465	-	UBR5	chr8	103373854	-
5UTR-5UTR	ENST00000311413	ENST00000317011		TCGA	LD	UCEC	TCGA-BK-A0CA-01A	RNF26	chr11	119205328	+	FOXR1	chr11	118842528	+
5UTR-5UTR	ENST00000446450	ENST00000287766		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-3UTR	ENST00000446450	ENST00000462473		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-intron	ENST00000446450	ENST00000536032		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-5UTR	ENST00000354956	ENST00000287766		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-3UTR	ENST00000354956	ENST00000462473		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-intron	ENST00000354956	ENST00000536032		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-5UTR	ENST00000354449	ENST00000287766		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-3UTR	ENST00000354449	ENST00000462473		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
5UTR-intron	ENST00000354449	ENST00000536032		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
intron-5UTR	ENST00000469654	ENST00000287766		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
intron-3UTR	ENST00000469654	ENST00000462473		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
intron-intron	ENST00000469654	ENST00000536032		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATG7	chr3	11314116	+	SLC6A1	chr3	11057358	+
Frame-shit	ENST00000355221	ENST00000356728		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000355221	ENST00000392697		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000355221	ENST00000318247		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
5CDS-intron	ENST00000355221	ENST00000480719		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000520188	ENST00000356728		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000520188	ENST00000392697		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000520188	ENST00000318247		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-intron	ENST00000520188	ENST00000480719		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000359530	ENST00000356728		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000359530	ENST00000392697		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000359530	ENST00000318247		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
5CDS-intron	ENST00000359530	ENST00000480719		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000523899	ENST00000356728		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000523899	ENST00000392697		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3CDS	ENST00000523899	ENST00000318247		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-intron	ENST00000523899	ENST00000480719		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000396774	ENST00000356728		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000396774	ENST00000392697		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
Frame-shit	ENST00000396774	ENST00000318247		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
5CDS-intron	ENST00000396774	ENST00000480719		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	ATP6V1H	chr8	54754138	-	RORC	chr1	151789756	-
intron-3UTR	ENST00000391967	ENST00000263946		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-3UTR	ENST00000391967	ENST00000367324		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-intron	ENST00000391967	ENST00000352845		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-intron	ENST00000391967	ENST00000475988		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-3UTR	ENST00000367313	ENST00000263946		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-3UTR	ENST00000367313	ENST00000367324		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-intron	ENST00000367313	ENST00000352845		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-intron	ENST00000367313	ENST00000475988		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-3UTR	ENST00000488842	ENST00000263946		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-3UTR	ENST00000488842	ENST00000367324		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-intron	ENST00000488842	ENST00000352845		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-intron	ENST00000488842	ENST00000475988		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	LAD1	chr1	201355750	-	PKP1	chr1	201300552	+
intron-3CDS	ENST00000360605	ENST00000378944		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-3CDS	ENST00000360605	ENST00000007510		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-3CDS	ENST00000360605	ENST00000314737		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-intron	ENST00000360605	ENST00000221905		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
Frame-shit	ENST00000542441	ENST00000378944		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
Frame-shit	ENST00000542441	ENST00000007510		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
Frame-shit	ENST00000542441	ENST00000314737		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5CDS-intron	ENST00000542441	ENST00000221905		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5UTR-3CDS	ENST00000392271	ENST00000378944		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5UTR-3CDS	ENST00000392271	ENST00000007510		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5UTR-3CDS	ENST00000392271	ENST00000314737		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5UTR-intron	ENST00000392271	ENST00000221905		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
In-frame	ENST00000312051	ENST00000378944		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
In-frame	ENST00000312051	ENST00000007510		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
In-frame	ENST00000312051	ENST00000314737		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5CDS-intron	ENST00000312051	ENST00000221905		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-3CDS	ENST00000574176	ENST00000378944		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-3CDS	ENST00000574176	ENST00000007510		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-3CDS	ENST00000574176	ENST00000314737		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
intron-intron	ENST00000574176	ENST00000221905		TCGA	LD	UCEC	TCGA-BK-A0CC-01A	URI1	chr19	30433571	+	ARHGAP33	chr19	36275074	+
5CDS-5UTR	ENST00000350796	ENST00000313324		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
5CDS-5UTR	ENST00000350796	ENST00000533877		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
5CDS-5UTR	ENST00000350796	ENST00000578372		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
intron-5UTR	ENST00000396741	ENST00000313324		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
intron-5UTR	ENST00000396741	ENST00000533877		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
intron-5UTR	ENST00000396741	ENST00000578372		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
intron-5UTR	ENST00000488964	ENST00000313324		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
intron-5UTR	ENST00000488964	ENST00000533877		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
intron-5UTR	ENST00000488964	ENST00000578372		TCGA	LD	UCEC	TCGA-BK-A139-01A	CYTH3	chr7	6312105	-	FAM220A	chr7	6370866	-
In-frame	ENST00000449606	ENST00000307149		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
5CDS-intron	ENST00000449606	ENST00000569635		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
Frame-shit	ENST00000563459	ENST00000307149		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
5CDS-intron	ENST00000563459	ENST00000569635		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
intron-3CDS	ENST00000564987	ENST00000307149		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
intron-intron	ENST00000564987	ENST00000569635		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
In-frame	ENST00000564501	ENST00000307149		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
5CDS-intron	ENST00000564501	ENST00000569635		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
In-frame	ENST00000563232	ENST00000307149		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
5CDS-intron	ENST00000563232	ENST00000569635		TCGA	LD	UCEC	TCGA-BK-A139-01A	EARS2	chr16	23563470	-	COG7	chr16	23430148	-
5CDS-intron	ENST00000372572	ENST00000353024		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372572	ENST00000392712		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372572	ENST00000368849		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372572	ENST00000368848		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372572	ENST00000538902		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372573	ENST00000353024		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372573	ENST00000392712		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372573	ENST00000368849		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372573	ENST00000368848		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000372573	ENST00000538902		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361346	ENST00000353024		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361346	ENST00000392712		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361346	ENST00000368849		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361346	ENST00000368848		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361346	ENST00000538902		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361776	ENST00000353024		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361776	ENST00000392712		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361776	ENST00000368849		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361776	ENST00000368848		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000361776	ENST00000538902		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000545068	ENST00000353024		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000545068	ENST00000392712		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000545068	ENST00000368849		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000545068	ENST00000368848		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000545068	ENST00000538902		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
intron-intron	ENST00000372571	ENST00000353024		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
intron-intron	ENST00000372571	ENST00000392712		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
intron-intron	ENST00000372571	ENST00000368849		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
intron-intron	ENST00000372571	ENST00000368848		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
intron-intron	ENST00000372571	ENST00000538902		TCGA	LD	UCEC	TCGA-BK-A26L-01A	FOXJ3	chr1	42744019	-	TUFT1	chr1	151535061	+
5CDS-5UTR	ENST00000304718	ENST00000246672		TCGA	LD	UCEC	TCGA-BK-A26L-01A	GGNBP2	chr17	34941880	+	NR1D1	chr17	38256519	-
intron-5UTR	ENST00000485685	ENST00000246672		TCGA	LD	UCEC	TCGA-BK-A26L-01A	GGNBP2	chr17	34941880	+	NR1D1	chr17	38256519	-
intron-intron	ENST00000529022	ENST00000497685		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
intron-5UTR	ENST00000529022	ENST00000264234		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
intron-intron	ENST00000529022	ENST00000460625		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
3UTR-intron	ENST00000292524	ENST00000497685		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
3UTR-5UTR	ENST00000292524	ENST00000264234		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
3UTR-intron	ENST00000292524	ENST00000460625		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
intron-intron	ENST00000528528	ENST00000497685		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
intron-5UTR	ENST00000528528	ENST00000264234		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
intron-intron	ENST00000528528	ENST00000460625		TCGA	LD	UCEC	TCGA-BK-A6W3-01A	LRRC14	chr8	145750134	+	UPK1B	chr3	118905565	+
5CDS-intron	ENST00000361545	ENST00000423083		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	CLIP2	chr7	73778645	+	NCF1B	chr7	72639746	+
5CDS-intron	ENST00000223398	ENST00000423083		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	CLIP2	chr7	73778645	+	NCF1B	chr7	72639746	+
5CDS-intron	ENST00000395060	ENST00000423083		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	CLIP2	chr7	73778645	+	NCF1B	chr7	72639746	+
In-frame	ENST00000397149	ENST00000379081		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000379087		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000379080		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000379084		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000379089		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000445726		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000297620		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
In-frame	ENST00000397149	ENST00000379078		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000379081		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000379087		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000379080		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000379084		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000379089		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000445726		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000297620		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000536631	ENST00000379078		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	SMU1	chr9	33053121	-	FAM219A	chr9	34405962	-
Frame-shit	ENST00000449592	ENST00000330079		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM120B	chr12	122199644	+	ORAI1	chr12	122078947	+
5UTR-3CDS	ENST00000540377	ENST00000330079		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM120B	chr12	122199644	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000538055	ENST00000330079		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM120B	chr12	122199644	+	ORAI1	chr12	122078947	+
intron-3CDS	ENST00000545122	ENST00000368354		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3CDS	ENST00000545122	ENST00000368352		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3CDS	ENST00000545122	ENST00000368347		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3UTR	ENST00000545122	ENST00000462780		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3UTR	ENST00000545122	ENST00000368349		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3UTR	ENST00000545122	ENST00000292254		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
Frame-shit	ENST00000309777	ENST00000368354		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
Frame-shit	ENST00000309777	ENST00000368352		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
Frame-shit	ENST00000309777	ENST00000368347		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000309777	ENST00000462780		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000309777	ENST00000368349		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000309777	ENST00000292254		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
Frame-shit	ENST00000373593	ENST00000368354		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
Frame-shit	ENST00000373593	ENST00000368352		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
Frame-shit	ENST00000373593	ENST00000368347		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000373593	ENST00000462780		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000373593	ENST00000368349		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000373593	ENST00000292254		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
In-frame	ENST00000344461	ENST00000368354		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
In-frame	ENST00000344461	ENST00000368352		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
In-frame	ENST00000344461	ENST00000368347		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000344461	ENST00000462780		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000344461	ENST00000368349		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-3UTR	ENST00000344461	ENST00000292254		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3CDS	ENST00000485689	ENST00000368354		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3CDS	ENST00000485689	ENST00000368352		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3CDS	ENST00000485689	ENST00000368347		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3UTR	ENST00000485689	ENST00000462780		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3UTR	ENST00000485689	ENST00000368349		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
intron-3UTR	ENST00000485689	ENST00000292254		TCGA	LD	UCEC	TCGA-D1-A3DG-01A	TMEM234	chr1	32681795	-	RUSC1	chr1	155295107	+
5CDS-5UTR	ENST00000357847	ENST00000261037		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000357847	ENST00000273342		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000357847	ENST00000463753		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000344492	ENST00000261037		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000344492	ENST00000273342		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000344492	ENST00000463753		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000275235	ENST00000261037		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000275235	ENST00000273342		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000275235	ENST00000463753		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000367598	ENST00000261037		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000367598	ENST00000273342		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000367598	ENST00000463753		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000494282	ENST00000261037		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-5UTR	ENST00000494282	ENST00000273342		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5CDS-intron	ENST00000494282	ENST00000463753		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
intron-5UTR	ENST00000367596	ENST00000261037		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
intron-5UTR	ENST00000367596	ENST00000273342		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
intron-intron	ENST00000367596	ENST00000463753		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	AIG1	chr6	143486320	+	COL8A1	chr3	99509524	+
5UTR-3CDS	ENST00000533854	ENST00000413366		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CACNG5	chr17	64831368	+	PRKCA	chr17	64770105	+
5UTR-intron	ENST00000533854	ENST00000583361		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CACNG5	chr17	64831368	+	PRKCA	chr17	64770105	+
intron-3CDS	ENST00000169565	ENST00000413366		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CACNG5	chr17	64831368	+	PRKCA	chr17	64770105	+
intron-intron	ENST00000169565	ENST00000583361		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CACNG5	chr17	64831368	+	PRKCA	chr17	64770105	+
intron-3CDS	ENST00000307139	ENST00000413366		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CACNG5	chr17	64831368	+	PRKCA	chr17	64770105	+
intron-intron	ENST00000307139	ENST00000583361		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CACNG5	chr17	64831368	+	PRKCA	chr17	64770105	+
3UTR-3CDS	ENST00000523376	ENST00000379554		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000523376	ENST00000424273		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000523376	ENST00000379556		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000523376	ENST00000528567		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000523376	ENST00000525218		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000523376	ENST00000530161		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-intron	ENST00000523376	ENST00000447214		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-3CDS	ENST00000324229	ENST00000379554		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000324229	ENST00000424273		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000324229	ENST00000379556		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000324229	ENST00000528567		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000324229	ENST00000525218		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000324229	ENST00000530161		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-intron	ENST00000324229	ENST00000447214		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-3CDS	ENST00000533448	ENST00000379554		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000424273		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000379556		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000528567		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000525218		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-5UTR	ENST00000533448	ENST00000530161		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
3UTR-intron	ENST00000533448	ENST00000447214		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	CALCB	chr11	15099016	+	INSC	chr11	15170676	+
In-frame	ENST00000302640	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
In-frame	ENST00000354582	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
In-frame	ENST00000423119	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
In-frame	ENST00000456211	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
In-frame	ENST00000357086	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
intron-3CDS	ENST00000544951	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
In-frame	ENST00000443694	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
intron-3CDS	ENST00000463980	ENST00000256495		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ITPR1	chr3	4808394	+	BHLHE40	chr3	5024521	+
5UTR-3CDS	ENST00000571669	ENST00000331238		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	METTL16	chr17	2341403	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000263092	ENST00000331238		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	METTL16	chr17	2341403	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000538844	ENST00000331238		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	METTL16	chr17	2341403	-	RTN4RL1	chr17	1841102	-
Frame-shit	ENST00000313486	ENST00000382148		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000313486	ENST00000447367		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000313486	ENST00000382150		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000313486	ENST00000382152		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000313486	ENST00000509207		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000313486	ENST00000382149		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000313486	ENST00000359001		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000539476	ENST00000382148		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000539476	ENST00000447367		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000539476	ENST00000382150		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000539476	ENST00000382152		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000539476	ENST00000509207		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000539476	ENST00000382149		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
5CDS-5UTR	ENST00000539476	ENST00000359001		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PITPNA	chr17	1451590	-	KCNIP4	chr4	20852290	-
Frame-shit	ENST00000215071	ENST00000301244		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000215071	ENST00000587090		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000215071	ENST00000454580		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000602911	ENST00000301244		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000602911	ENST00000587090		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000602911	ENST00000454580		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000592035	ENST00000301244		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000592035	ENST00000587090		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000592035	ENST00000454580		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PSMD8	chr19	38865601	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000368226	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000368226	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368226	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368226	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368227	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000368227	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368227	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368227	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000532331	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000532331	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000532331	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000532331	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368213	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000368213	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368213	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368213	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368210	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000368210	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368210	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368210	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368215	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000368215	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368215	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368215	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368207	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000368207	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368207	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000368207	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5UTR-intron	ENST00000524481	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5UTR-5UTR	ENST00000524481	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5UTR-intron	ENST00000524481	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5UTR-intron	ENST00000524481	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000525459	ENST00000367231		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-5UTR	ENST00000525459	ENST00000464135		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000525459	ENST00000367230		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
5CDS-intron	ENST00000525459	ENST00000367233		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	PTPRK	chr6	128718711	-	MTRF1L	chr6	153312456	-
Frame-shit	ENST00000262031	ENST00000237289		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
5CDS-intron	ENST00000262031	ENST00000485192		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
Frame-shit	ENST00000552247	ENST00000237289		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
5CDS-intron	ENST00000552247	ENST00000485192		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
intron-3CDS	ENST00000549945	ENST00000237289		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
intron-intron	ENST00000549945	ENST00000485192		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
Frame-shit	ENST00000550726	ENST00000237289		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
5CDS-intron	ENST00000550726	ENST00000485192		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
Frame-shit	ENST00000542360	ENST00000237289		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
5CDS-intron	ENST00000542360	ENST00000485192		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	RBMS2	chr12	56975936	+	TNFAIP3	chr6	138195982	+
5CDS-5UTR	ENST00000367094	ENST00000230050		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	TULP4	chr6	158735300	+	RPS12	chr6	133135871	+
5CDS-5UTR	ENST00000367097	ENST00000230050		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	TULP4	chr6	158735300	+	RPS12	chr6	133135871	+
5UTR-3CDS	ENST00000462705	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
5UTR-intron	ENST00000462705	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-3CDS	ENST00000393785	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-intron	ENST00000393785	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-3CDS	ENST00000481632	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-intron	ENST00000481632	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-3CDS	ENST00000471418	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-intron	ENST00000471418	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
5UTR-3CDS	ENST00000357258	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
5UTR-intron	ENST00000357258	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-3CDS	ENST00000464560	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-intron	ENST00000464560	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
5UTR-3CDS	ENST00000488663	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
5UTR-intron	ENST00000488663	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-3CDS	ENST00000474710	ENST00000264538		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
intron-intron	ENST00000474710	ENST00000468021		TCGA	LD	UCEC	TCGA-D1-A3DH-01A	ZBTB20	chr3	114619151	-	IFT57	chr3	107886711	-
In-frame	ENST00000262367	ENST00000439268		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
In-frame	ENST00000262367	ENST00000340578		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000262367	ENST00000541471		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000262367	ENST00000591092		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000262367	ENST00000034275		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000262367	ENST00000591124		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
In-frame	ENST00000382070	ENST00000439268		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
In-frame	ENST00000382070	ENST00000340578		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000382070	ENST00000541471		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000382070	ENST00000591092		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000382070	ENST00000034275		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
5CDS-intron	ENST00000382070	ENST00000591124		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	CREBBP	chr16	3900298	-	RANBP3	chr19	5951607	-
Frame-shit	ENST00000584601	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000584601	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000584601	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000584601	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000584601	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000406381	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000406381	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000406381	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000406381	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000406381	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000541774	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000541774	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000541774	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000541774	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000541774	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000445658	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000445658	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000445658	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000445658	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000445658	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000540147	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000540147	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000540147	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000540147	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000540147	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000584450	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000584450	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000584450	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000584450	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000584450	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000269571	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000269571	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000269571	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000269571	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000269571	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000578199	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000578199	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000578199	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000578199	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000578199	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000540042	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000540042	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
Frame-shit	ENST00000540042	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000540042	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5CDS-3UTR	ENST00000540042	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000584888	ENST00000465271		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000584888	ENST00000366858		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3CDS	ENST00000584888	ENST00000366857		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000584888	ENST00000468318		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
intron-3UTR	ENST00000584888	ENST00000366856		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ERBB2	chr17	37866734	+	CNIH4	chr1	224553581	+
5UTR-3CDS	ENST00000292431	ENST00000444215		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NACC1	chr19	13229268	+	TDRD12	chr19	33281437	+
5UTR-3CDS	ENST00000292431	ENST00000421545		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NACC1	chr19	13229268	+	TDRD12	chr19	33281437	+
In-frame	ENST00000391875	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000391875	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000391875	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000281701	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000281701	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000281701	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000469075	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000469075	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000469075	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000482491	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000482491	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000482491	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000340871	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000340871	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
Frame-shit	ENST00000340871	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000361463	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000361463	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000361463	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000468673	ENST00000348931		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000468673	ENST00000584588		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
intron-3CDS	ENST00000468673	ENST00000377940		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	NVL	chr1	224455736	-	ZPBP2	chr17	38026947	+
In-frame	ENST00000304046	ENST00000580825		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000304046	ENST00000254079		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000304046	ENST00000579000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000304046	ENST00000394265		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000304046	ENST00000394267		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000579695	ENST00000580825		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000579695	ENST00000254079		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
Frame-shit	ENST00000579695	ENST00000579000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000579695	ENST00000394265		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000579695	ENST00000394267		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000394169	ENST00000580825		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000394169	ENST00000254079		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
In-frame	ENST00000394169	ENST00000579000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000394169	ENST00000394265		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000394169	ENST00000394267		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584220	ENST00000580825		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584220	ENST00000254079		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000584220	ENST00000579000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000584220	ENST00000394265		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000584220	ENST00000394267		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000582052	ENST00000580825		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000582052	ENST00000254079		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-3CDS	ENST00000582052	ENST00000579000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000582052	ENST00000394265		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
intron-5UTR	ENST00000582052	ENST00000394267		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	ORMDL3	chr17	38080283	-	PPP1R1B	chr17	37785423	+
5CDS-5UTR	ENST00000244137	ENST00000284000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000244137	ENST00000585933		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000397032	ENST00000284000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000397032	ENST00000585933		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000436370	ENST00000284000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000436370	ENST00000585933		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000591968	ENST00000284000		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
intron-5UTR	ENST00000591968	ENST00000585933		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PEPD	chr19	33902578	-	CEBPG	chr19	33870050	+
5CDS-5UTR	ENST00000262764	ENST00000292174		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PGS1	chr17	76395618	+	CXCR5	chr11	118754561	+
5CDS-5UTR	ENST00000329897	ENST00000292174		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PGS1	chr17	76395618	+	CXCR5	chr11	118754561	+
3UTR-5UTR	ENST00000588281	ENST00000292174		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PGS1	chr17	76395618	+	CXCR5	chr11	118754561	+
Frame-shit	ENST00000292539	ENST00000423230		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000292539	ENST00000398656		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000292539	ENST00000534366		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000292539	ENST00000528919		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000292539	ENST00000326134		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000292539	ENST00000527071		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
5CDS-intron	ENST00000292539	ENST00000544576		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-3CDS	ENST00000529009	ENST00000423230		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-3CDS	ENST00000529009	ENST00000398656		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-3CDS	ENST00000529009	ENST00000534366		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-3CDS	ENST00000529009	ENST00000528919		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-3CDS	ENST00000529009	ENST00000326134		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-3CDS	ENST00000529009	ENST00000527071		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
intron-intron	ENST00000529009	ENST00000544576		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000435887	ENST00000423230		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000435887	ENST00000398656		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000435887	ENST00000534366		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000435887	ENST00000528919		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000435887	ENST00000326134		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
Frame-shit	ENST00000435887	ENST00000527071		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
5CDS-intron	ENST00000435887	ENST00000544576		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	PPP1R16A	chr8	145722836	+	MROH1	chr8	145254025	+
5CDS-intron	ENST00000389467	ENST00000253457		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
5CDS-intron	ENST00000389467	ENST00000435200		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
5CDS-intron	ENST00000446231	ENST00000253457		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
5CDS-intron	ENST00000446231	ENST00000435200		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
intron-intron	ENST00000565224	ENST00000253457		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
intron-intron	ENST00000565224	ENST00000435200		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
intron-intron	ENST00000567737	ENST00000253457		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
intron-intron	ENST00000567737	ENST00000435200		TCGA	LD	UCEC	TCGA-D1-A3JP-01A	SMG1	chr16	18856751	-	EMC8	chr16	85805497	-
5CDS-5UTR	ENST00000350811	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000350811	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000350811	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000350811	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000350811	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000457475	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000457475	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000457475	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000457475	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000457475	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395749	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395749	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395749	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395749	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395749	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000502837	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000502837	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000502837	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000502837	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000502837	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000440254	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000440254	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000440254	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000440254	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000440254	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000358707	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000358707	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000358707	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000358707	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000358707	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000353625	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000353625	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000353625	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000353625	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000353625	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000258682	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000258682	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000258682	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000258682	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000258682	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000347193	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000347193	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000347193	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000347193	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000347193	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000346990	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000346990	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000346990	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000346990	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000346990	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395747	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395747	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395747	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395747	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000395747	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489429	ENST00000491545		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489429	ENST00000435456		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489429	ENST00000402844		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489429	ENST00000544408		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489429	ENST00000542412		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	CAMK2B	chr7	44270605	-	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000420083	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000420083	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000449870	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000449870	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000318511	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000318511	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000407004	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000407004	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000589998	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000589998	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000250241	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000250241	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000592763	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000592763	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000588657	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000588657	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000590261	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
5CDS-5UTR	ENST00000590261	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
intron-5UTR	ENST00000586544	ENST00000454339		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
intron-5UTR	ENST00000586544	ENST00000357901		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	ILF3	chr19	10782211	+	ZNF441	chr19	11889145	+
intron-3CDS	ENST00000376030	ENST00000361445		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000376030	ENST00000376838		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000376030	ENST00000495435		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-3CDS	ENST00000503743	ENST00000361445		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000503743	ENST00000376838		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000503743	ENST00000495435		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-3CDS	ENST00000422387	ENST00000361445		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000422387	ENST00000376838		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000422387	ENST00000495435		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
In-frame	ENST00000361144	ENST00000361445		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
5CDS-intron	ENST00000361144	ENST00000376838		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
5CDS-intron	ENST00000361144	ENST00000495435		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-3CDS	ENST00000400798	ENST00000361445		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000400798	ENST00000376838		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000400798	ENST00000495435		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-3CDS	ENST00000400797	ENST00000361445		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000400797	ENST00000376838		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
intron-intron	ENST00000400797	ENST00000495435		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	KAZN	chr1	15251068	+	MTOR	chr1	11206848	-
5CDS-intron	ENST00000375460	ENST00000264211		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000400422		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000602326		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000374935		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000374937		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000536266		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000374933		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000544689		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000356916		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000374927		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
5CDS-intron	ENST00000375460	ENST00000537738		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PADI3	chr1	17607291	+	EIF4G3	chr1	21256741	-
Frame-shit	ENST00000371457	ENST00000321773		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
Frame-shit	ENST00000371457	ENST00000409012		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
5CDS-5UTR	ENST00000371457	ENST00000541945		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
In-frame	ENST00000277531	ENST00000321773		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
In-frame	ENST00000277531	ENST00000409012		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
5CDS-5UTR	ENST00000277531	ENST00000541945		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
In-frame	ENST00000406427	ENST00000321773		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
In-frame	ENST00000406427	ENST00000409012		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
5CDS-5UTR	ENST00000406427	ENST00000541945		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
intron-3CDS	ENST00000492278	ENST00000321773		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
intron-3CDS	ENST00000492278	ENST00000409012		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
intron-5UTR	ENST00000492278	ENST00000541945		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	PNPLA7	chr9	140400066	-	TPRN	chr9	140087143	-
intron-intron	ENST00000294189	ENST00000458031		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000294189	ENST00000494103		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000294189	ENST00000476854		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000294189	ENST00000476351		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000294189	ENST00000404366		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000294189	ENST00000468068		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000466397	ENST00000458031		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000466397	ENST00000494103		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000466397	ENST00000476854		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000466397	ENST00000476351		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000466397	ENST00000404366		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000466397	ENST00000468068		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000479017	ENST00000458031		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000479017	ENST00000494103		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000479017	ENST00000476854		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000479017	ENST00000476351		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000479017	ENST00000404366		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000479017	ENST00000468068		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000495383	ENST00000458031		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000495383	ENST00000494103		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000495383	ENST00000476854		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000495383	ENST00000476351		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000495383	ENST00000404366		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000495383	ENST00000468068		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000475248	ENST00000458031		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000475248	ENST00000494103		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000475248	ENST00000476854		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000475248	ENST00000476351		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000475248	ENST00000404366		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000475248	ENST00000468068		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000481629	ENST00000458031		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000481629	ENST00000494103		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000481629	ENST00000476854		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000481629	ENST00000476351		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000481629	ENST00000404366		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
intron-intron	ENST00000481629	ENST00000468068		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	RPL29	chr3	52027746	-	ACY1	chr3	52020220	+
Frame-shit	ENST00000256062	ENST00000541529		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
Frame-shit	ENST00000256062	ENST00000270776		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-5UTR	ENST00000256062	ENST00000538557		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-intron	ENST00000256062	ENST00000498356		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
In-frame	ENST00000551659	ENST00000541529		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
In-frame	ENST00000551659	ENST00000270776		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-5UTR	ENST00000551659	ENST00000538557		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-intron	ENST00000551659	ENST00000498356		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
In-frame	ENST00000552618	ENST00000541529		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
In-frame	ENST00000552618	ENST00000270776		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-5UTR	ENST00000552618	ENST00000538557		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-intron	ENST00000552618	ENST00000498356		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000319685	ENST00000541529		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
intron-3CDS	ENST00000319685	ENST00000270776		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
intron-5UTR	ENST00000319685	ENST00000538557		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
intron-intron	ENST00000319685	ENST00000498356		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
In-frame	ENST00000539277	ENST00000541529		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
In-frame	ENST00000539277	ENST00000270776		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-5UTR	ENST00000539277	ENST00000538557		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-intron	ENST00000539277	ENST00000498356		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
Frame-shit	ENST00000381224	ENST00000541529		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
Frame-shit	ENST00000381224	ENST00000270776		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-5UTR	ENST00000381224	ENST00000538557		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-intron	ENST00000381224	ENST00000498356		TCGA	LD	UCEC	TCGA-D1-A3JQ-01A	TMTC1	chr12	29904599	-	PGD	chr1	10459686	+
5CDS-intron	ENST00000333957	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000333957	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000333957	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000333957	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000333957	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000446597	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000446597	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000446597	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000446597	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000446597	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000536386	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000536386	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000536386	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000536386	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000536386	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000396028	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000396028	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000396028	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000396028	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000396028	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000542676	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000542676	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000542676	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000542676	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000542676	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000544930	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000544930	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000544930	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000544930	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000544930	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000545552	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000545552	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-5UTR	ENST00000545552	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000545552	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
5CDS-intron	ENST00000545552	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
intron-intron	ENST00000540703	ENST00000396037		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
intron-intron	ENST00000540703	ENST00000539510		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
intron-5UTR	ENST00000540703	ENST00000536558		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
intron-intron	ENST00000540703	ENST00000404299		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
intron-intron	ENST00000540703	ENST00000381424		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C2CD5	chr12	22606830	-	ST8SIA1	chr12	22479275	-
In-frame	ENST00000378953	ENST00000256413		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000378953	ENST00000382998		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
5CDS-intron	ENST00000378953	ENST00000592658		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000337752	ENST00000256413		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000337752	ENST00000382998		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
5CDS-intron	ENST00000337752	ENST00000592658		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000378947	ENST00000256413		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000378947	ENST00000382998		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
5CDS-intron	ENST00000378947	ENST00000592658		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000407797	ENST00000256413		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000407797	ENST00000382998		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
5CDS-intron	ENST00000407797	ENST00000592658		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
intron-3CDS	ENST00000464024	ENST00000256413		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
intron-3CDS	ENST00000464024	ENST00000382998		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
intron-intron	ENST00000464024	ENST00000592658		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	C5orf56	chr5	131755632	+	CTIF	chr18	46343592	+
In-frame	ENST00000256413	ENST00000378953		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000256413	ENST00000337752		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000256413	ENST00000378947		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000256413	ENST00000407797		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
5CDS-intron	ENST00000256413	ENST00000464024		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000382998	ENST00000378953		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000382998	ENST00000337752		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000382998	ENST00000378947		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
In-frame	ENST00000382998	ENST00000407797		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
5CDS-intron	ENST00000382998	ENST00000464024		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000592658	ENST00000378953		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000592658	ENST00000337752		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000592658	ENST00000378947		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
intron-3CDS	ENST00000592658	ENST00000407797		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
intron-intron	ENST00000592658	ENST00000464024		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	CTIF	chr18	46288060	+	C5orf56	chr5	131785342	+
3UTR-intron	ENST00000288670	ENST00000287387		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000288670	ENST00000523984		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-3UTR	ENST00000288670	ENST00000517609		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000288670	ENST00000523356		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000288670	ENST00000518125		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000475377	ENST00000287387		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000475377	ENST00000523984		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-3UTR	ENST00000475377	ENST00000517609		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000475377	ENST00000523356		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
3UTR-intron	ENST00000475377	ENST00000518125		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
intron-intron	ENST00000497192	ENST00000287387		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
intron-intron	ENST00000497192	ENST00000523984		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
intron-3UTR	ENST00000497192	ENST00000517609		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
intron-intron	ENST00000497192	ENST00000523356		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
intron-intron	ENST00000497192	ENST00000518125		TCGA	LD	UCEC	TCGA-DF-A2KR-01A	FMNL2	chr2	153504449	+	WDYHV1	chr8	124447682	+
5CDS-intron	ENST00000436443	ENST00000355875		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000436443	ENST00000366541		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000436443	ENST00000343783		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000436443	ENST00000391846		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000436443	ENST00000496361		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000342788	ENST00000355875		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000342788	ENST00000366541		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000342788	ENST00000343783		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000342788	ENST00000391846		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000342788	ENST00000496361		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000402597	ENST00000355875		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000402597	ENST00000366541		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000402597	ENST00000343783		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000402597	ENST00000391846		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
5CDS-intron	ENST00000402597	ENST00000496361		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
intron-intron	ENST00000484474	ENST00000355875		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
intron-intron	ENST00000484474	ENST00000366541		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
intron-intron	ENST00000484474	ENST00000343783		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
intron-intron	ENST00000484474	ENST00000391846		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
intron-intron	ENST00000484474	ENST00000496361		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	ERBB4	chr2	212426628	-	SDCCAG8	chr1	243433394	+
3UTR-3UTR	ENST00000436066	ENST00000323146		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	PLEKHF1	chr19	30166061	+	SLC35A4	chr5	139948327	+
3UTR-intron	ENST00000436066	ENST00000508770		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	PLEKHF1	chr19	30166061	+	SLC35A4	chr5	139948327	+
3UTR-3UTR	ENST00000436066	ENST00000514199		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	PLEKHF1	chr19	30166061	+	SLC35A4	chr5	139948327	+
intron-3UTR	ENST00000592810	ENST00000323146		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	PLEKHF1	chr19	30166061	+	SLC35A4	chr5	139948327	+
intron-intron	ENST00000592810	ENST00000508770		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	PLEKHF1	chr19	30166061	+	SLC35A4	chr5	139948327	+
intron-3UTR	ENST00000592810	ENST00000514199		TCGA	LD	UCEC	TCGA-DI-A2QT-01A	PLEKHF1	chr19	30166061	+	SLC35A4	chr5	139948327	+
Frame-shit	ENST00000355072	ENST00000398051		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
Frame-shit	ENST00000355072	ENST00000398052		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
Frame-shit	ENST00000355072	ENST00000504933		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
Frame-shit	ENST00000355072	ENST00000345167		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
5CDS-intron	ENST00000355072	ENST00000503518		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
5CDS-intron	ENST00000355072	ENST00000442472		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
5CDS-intron	ENST00000355072	ENST00000509545		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-3CDS	ENST00000513806	ENST00000398051		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-3CDS	ENST00000513806	ENST00000398052		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-3CDS	ENST00000513806	ENST00000504933		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-3CDS	ENST00000513806	ENST00000345167		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-intron	ENST00000513806	ENST00000503518		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-intron	ENST00000513806	ENST00000442472		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
intron-intron	ENST00000513806	ENST00000509545		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	HTT	chr4	3076815	+	GRK4	chr4	3042299	+
5CDS-3UTR	ENST00000399002	ENST00000518848		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000399002	ENST00000521197		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000399002	ENST00000518947		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000399002	ENST00000521231		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000399002	ENST00000524304		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000378194	ENST00000518848		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000378194	ENST00000521197		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000378194	ENST00000518947		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000378194	ENST00000521231		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-3UTR	ENST00000378194	ENST00000524304		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
3UTR-3UTR	ENST00000476791	ENST00000518848		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
3UTR-3UTR	ENST00000476791	ENST00000521197		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
3UTR-3UTR	ENST00000476791	ENST00000518947		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
3UTR-3UTR	ENST00000476791	ENST00000521231		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
3UTR-3UTR	ENST00000476791	ENST00000524304		TCGA	LD	UCEC	TCGA-DI-A2QY-01A	SPTLC3	chr20	12990032	+	HOXA-AS3	chr7	27191194	+
5CDS-5UTR	ENST00000292205	ENST00000347370		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000292205	ENST00000349431		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000292205	ENST00000339385		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-5UTR	ENST00000292205	ENST00000348298		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000292205	ENST00000400929		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000292205	ENST00000360466		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000292205	ENST00000400930		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5CDS-intron	ENST00000292205	ENST00000491779		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000368474	ENST00000347370		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000368474	ENST00000349431		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368474	ENST00000339385		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000368474	ENST00000348298		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368474	ENST00000400929		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368474	ENST00000360466		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368474	ENST00000400930		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000368474	ENST00000491779		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-5UTR	ENST00000368471	ENST00000347370		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-5UTR	ENST00000368471	ENST00000349431		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-intron	ENST00000368471	ENST00000339385		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-5UTR	ENST00000368471	ENST00000348298		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-intron	ENST00000368471	ENST00000400929		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-intron	ENST00000368471	ENST00000360466		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-intron	ENST00000368471	ENST00000400930		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
5UTR-intron	ENST00000368471	ENST00000491779		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000471068	ENST00000347370		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000471068	ENST00000349431		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000339385		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-5UTR	ENST00000471068	ENST00000348298		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000400929		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000360466		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000400930		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
intron-intron	ENST00000471068	ENST00000491779		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	ADAR	chr1	154600331	-	UBE2J2	chr1	1203372	-
In-frame	ENST00000392521	ENST00000353487		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CIT	chr12	120189855	-	SPPL3	chr12	121204175	-
In-frame	ENST00000261833	ENST00000353487		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CIT	chr12	120189855	-	SPPL3	chr12	121204175	-
5UTR-3CDS	ENST00000537607	ENST00000353487		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CIT	chr12	120189855	-	SPPL3	chr12	121204175	-
5CDS-5UTR	ENST00000263097	ENST00000263620		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-3UTR	ENST00000263097	ENST00000592216		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
3UTR-5UTR	ENST00000606983	ENST00000263620		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
3UTR-3UTR	ENST00000606983	ENST00000592216		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-5UTR	ENST00000348419	ENST00000263620		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-3UTR	ENST00000348419	ENST00000592216		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-5UTR	ENST00000565096	ENST00000263620		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-3UTR	ENST00000565096	ENST00000592216		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-5UTR	ENST00000562958	ENST00000263620		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
5CDS-3UTR	ENST00000562958	ENST00000592216		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	CNN2	chr19	1036561	+	ARID3A	chr19	929262	+
intron-5UTR	ENST00000341217	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000341217	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000341217	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000341217	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000341217	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581407	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-intron	ENST00000581407	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581407	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581407	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581407	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000582266	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-intron	ENST00000582266	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000582266	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000582266	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000582266	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000452648	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000452648	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000452648	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000452648	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000452648	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000582059	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000582059	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000582059	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000582059	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000582059	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000583953	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-intron	ENST00000583953	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000583953	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000583953	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
intron-5UTR	ENST00000583953	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000577682	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-intron	ENST00000577682	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000577682	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000577682	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000577682	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000583522	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-intron	ENST00000583522	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000583522	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000583522	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000583522	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581381	ENST00000354329		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-intron	ENST00000581381	ENST00000529578		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581381	ENST00000533112		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581381	ENST00000531253		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
5UTR-5UTR	ENST00000581381	ENST00000527372		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	FAM222B	chr17	27169700	-	MYO18A	chr17	27494039	-
In-frame	ENST00000558518	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558518	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558518	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558518	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558518	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000557933	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000557933	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000557933	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000557933	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000557933	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000455727	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000455727	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000455727	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000455727	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000455727	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000535915	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000535915	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000535915	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000535915	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000535915	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000545707	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000545707	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000545707	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000545707	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000545707	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558013	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558013	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558013	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558013	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
In-frame	ENST00000558013	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
intron-3CDS	ENST00000560628	ENST00000307422		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
intron-3CDS	ENST00000560628	ENST00000253099		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
intron-3CDS	ENST00000560628	ENST00000590669		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
intron-3CDS	ENST00000560628	ENST00000393733		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
intron-3CDS	ENST00000560628	ENST00000588502		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	LDLR	chr19	11218190	+	MRPL4	chr19	10368898	+
5CDS-5UTR	ENST00000371429	ENST00000326956		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371429	ENST00000417664		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371429	ENST00000371320		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371429	ENST00000371319		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000371429	ENST00000357475		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000540001	ENST00000326956		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000540001	ENST00000417664		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000540001	ENST00000371320		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000540001	ENST00000371319		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
3UTR-5UTR	ENST00000540001	ENST00000357475		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000537333	ENST00000326956		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000537333	ENST00000417664		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000537333	ENST00000371320		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000537333	ENST00000371319		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000537333	ENST00000357475		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000234725	ENST00000326956		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000234725	ENST00000417664		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000234725	ENST00000371320		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000234725	ENST00000371319		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
5CDS-5UTR	ENST00000234725	ENST00000357475		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000480952	ENST00000326956		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000480952	ENST00000417664		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000480952	ENST00000371320		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000480952	ENST00000371319		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
intron-5UTR	ENST00000480952	ENST00000357475		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	NDC1	chr1	54252831	-	SSBP3	chr1	54747200	-
Frame-shit	ENST00000421905	ENST00000380183		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000421905	ENST00000572022		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000421905	ENST00000380173		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000421905	ENST00000573359		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000221462	ENST00000380183		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000221462	ENST00000572022		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000221462	ENST00000380173		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
Frame-shit	ENST00000221462	ENST00000573359		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
3UTR-3CDS	ENST00000496125	ENST00000380183		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
3UTR-3CDS	ENST00000496125	ENST00000572022		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
3UTR-3CDS	ENST00000496125	ENST00000380173		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
3UTR-3CDS	ENST00000496125	ENST00000573359		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	PPP1R37	chr19	45596785	+	ALOX15B	chr17	7950225	+
intron-3CDS	ENST00000482728	ENST00000479054		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
intron-3CDS	ENST00000482728	ENST00000345716		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
intron-3CDS	ENST00000482728	ENST00000488380		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
intron-3CDS	ENST00000482728	ENST00000420808		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
intron-intron	ENST00000482728	ENST00000464280		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
In-frame	ENST00000307106	ENST00000479054		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
In-frame	ENST00000307106	ENST00000345716		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
In-frame	ENST00000307106	ENST00000488380		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
In-frame	ENST00000307106	ENST00000420808		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
5CDS-intron	ENST00000307106	ENST00000464280		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000477703	ENST00000479054		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000477703	ENST00000345716		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000477703	ENST00000488380		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000477703	ENST00000420808		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
5CDS-intron	ENST00000477703	ENST00000464280		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000476842	ENST00000479054		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000476842	ENST00000345716		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000476842	ENST00000488380		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
Frame-shit	ENST00000476842	ENST00000420808		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
5CDS-intron	ENST00000476842	ENST00000464280		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SMIM4	chr3	52570789	+	NISCH	chr3	52504875	+
intron-intron	ENST00000472876	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-3UTR	ENST00000472876	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000472876	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000472876	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000472876	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000472876	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395527	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000395527	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395527	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395527	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395527	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395527	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395529	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-3UTR	ENST00000395529	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395529	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395529	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395529	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395529	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000261503	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000261503	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000261503	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000261503	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000261503	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000261503	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395530	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000395530	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395530	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395530	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395530	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000395530	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000536879	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-3UTR	ENST00000536879	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000536879	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000536879	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000536879	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
5CDS-intron	ENST00000536879	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395522	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-3UTR	ENST00000395522	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395522	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395522	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395522	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395522	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395525	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-3UTR	ENST00000395525	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395525	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395525	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395525	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000395525	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000584527	ENST00000339566		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-3UTR	ENST00000584527	ENST00000409707		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000584527	ENST00000394073		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000584527	ENST00000394070		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000584527	ENST00000536064		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
intron-intron	ENST00000584527	ENST00000486458		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SPECC1	chr17	20163607	+	STAMBP	chr2	74100479	+
In-frame	ENST00000307877	ENST00000262765		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SRP68	chr17	74046509	-	QRICH2	chr17	74287493	-
In-frame	ENST00000539137	ENST00000262765		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SRP68	chr17	74046509	-	QRICH2	chr17	74287493	-
Frame-shit	ENST00000355113	ENST00000262765		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SRP68	chr17	74046509	-	QRICH2	chr17	74287493	-
In-frame	ENST00000602720	ENST00000262765		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SRP68	chr17	74046509	-	QRICH2	chr17	74287493	-
5UTR-3CDS	ENST00000542536	ENST00000262765		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	SRP68	chr17	74046509	-	QRICH2	chr17	74287493	-
intron-intron	ENST00000409262	ENST00000472876		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-5UTR	ENST00000409262	ENST00000395527		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-5UTR	ENST00000409262	ENST00000395529		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-5UTR	ENST00000409262	ENST00000261503		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000409262	ENST00000395530		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000409262	ENST00000536879		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000409262	ENST00000395522		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000409262	ENST00000395525		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
intron-intron	ENST00000409262	ENST00000584527		TCGA	LD	UCEC	TCGA-E6-A8L9-01A	TET3	chr2	74230293	+	SPECC1	chr17	19999944	+
Frame-shit	ENST00000261798	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
Frame-shit	ENST00000377843	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
5UTR-3CDS	ENST00000515435	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
5UTR-3CDS	ENST00000504676	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
Frame-shit	ENST00000515768	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
intron-3CDS	ENST00000606719	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
intron-3CDS	ENST00000606299	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
Frame-shit	ENST00000515748	ENST00000255266		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CSNK1A1	chr5	148929638	-	PDE6A	chr5	149279087	-
5CDS-3UTR	ENST00000341502	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000341502	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000341502	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000341502	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000341749	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000341749	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000341749	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000341749	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000557038	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000557038	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000557038	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000557038	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000396165	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000396165	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000396165	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000396165	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000396158	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000396158	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000396158	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000396158	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000280083	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000280083	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000280083	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000280083	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000556148	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000556148	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000556148	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000556148	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000348007	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000348007	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000348007	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000348007	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000553352	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-3UTR	ENST00000553352	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000553352	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
5CDS-intron	ENST00000553352	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
3UTR-3UTR	ENST00000553383	ENST00000553331		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
3UTR-3UTR	ENST00000553383	ENST00000216832		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
3UTR-intron	ENST00000553383	ENST00000556530		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
3UTR-intron	ENST00000553383	ENST00000557680		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	CTAGE5	chr14	39818181	+	PNN	chr14	39648295	+
In-frame	ENST00000373247	ENST00000435213		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
In-frame	ENST00000373247	ENST00000314904		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
In-frame	ENST00000373247	ENST00000373387		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
5CDS-3UTR	ENST00000373247	ENST00000496711		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3CDS	ENST00000373245	ENST00000435213		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3CDS	ENST00000373245	ENST00000314904		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3CDS	ENST00000373245	ENST00000373387		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3UTR	ENST00000373245	ENST00000496711		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000393706	ENST00000435213		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000393706	ENST00000314904		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000393706	ENST00000373387		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
5CDS-3UTR	ENST00000393706	ENST00000496711		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3CDS	ENST00000460181	ENST00000435213		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3CDS	ENST00000460181	ENST00000314904		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3CDS	ENST00000460181	ENST00000373387		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
3UTR-3UTR	ENST00000460181	ENST00000496711		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000373225	ENST00000435213		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000373225	ENST00000314904		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000373225	ENST00000373387		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
5CDS-3UTR	ENST00000373225	ENST00000496711		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	FPGS	chr9	130575602	+	GARNL3	chr9	130145717	+
Frame-shit	ENST00000449576	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000449576	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000449576	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000396099	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000396099	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000396099	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000425416	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000425416	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000425416	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000256720	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000256720	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000256720	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000396097	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000396097	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000396097	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000404113	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
Frame-shit	ENST00000404113	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
5CDS-intron	ENST00000404113	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-3CDS	ENST00000464517	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-3CDS	ENST00000464517	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-intron	ENST00000464517	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-3CDS	ENST00000396098	ENST00000234677		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-3CDS	ENST00000396098	ENST00000369923		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-intron	ENST00000396098	ENST00000468588		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	LPIN1	chr2	11935613	+	SARS	chr1	109766600	+
intron-5UTR	ENST00000292539	ENST00000530047		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000292539	ENST00000527078		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000292539	ENST00000402965		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000292539	ENST00000532887		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000292539	ENST00000329994		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-3UTR	ENST00000292539	ENST00000526891		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000292539	ENST00000540505		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000292539	ENST00000526752		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000530047		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000527078		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000402965		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000532887		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000329994		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-3UTR	ENST00000529009	ENST00000526891		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000540505		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000529009	ENST00000526752		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000530047		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000527078		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000402965		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000532887		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000329994		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-3UTR	ENST00000435887	ENST00000526891		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000540505		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
intron-5UTR	ENST00000435887	ENST00000526752		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	PPP1R16A	chr8	145703510	+	SLC52A2	chr8	145582844	+
Frame-shit	ENST00000274254	ENST00000304457		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
Frame-shit	ENST00000274254	ENST00000376936		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5CDS-3UTR	ENST00000274254	ENST00000544779		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5CDS-intron	ENST00000274254	ENST00000485606		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
Frame-shit	ENST00000274255	ENST00000304457		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
Frame-shit	ENST00000274255	ENST00000376936		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5CDS-3UTR	ENST00000274255	ENST00000544779		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5CDS-intron	ENST00000274255	ENST00000485606		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
Frame-shit	ENST00000508514	ENST00000304457		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
Frame-shit	ENST00000508514	ENST00000376936		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5CDS-3UTR	ENST00000508514	ENST00000544779		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5CDS-intron	ENST00000508514	ENST00000485606		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5UTR-3CDS	ENST00000546211	ENST00000304457		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5UTR-3CDS	ENST00000546211	ENST00000376936		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5UTR-3UTR	ENST00000546211	ENST00000544779		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
5UTR-intron	ENST00000546211	ENST00000485606		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	SKP2	chr5	36153144	+	EXOSC10	chr1	11132228	-
Frame-shit	ENST00000331456	ENST00000449682		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5CDS-3UTR	ENST00000331456	ENST00000383728		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5CDS-intron	ENST00000331456	ENST00000545762		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5CDS-intron	ENST00000331456	ENST00000494828		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
Frame-shit	ENST00000469027	ENST00000449682		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5CDS-3UTR	ENST00000469027	ENST00000383728		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5CDS-intron	ENST00000469027	ENST00000545762		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5CDS-intron	ENST00000469027	ENST00000494828		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5UTR-3CDS	ENST00000473863	ENST00000449682		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5UTR-3UTR	ENST00000473863	ENST00000383728		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5UTR-intron	ENST00000473863	ENST00000545762		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
5UTR-intron	ENST00000473863	ENST00000494828		TCGA	LD	UCEC	TCGA-EO-A1Y7-01A	TRAIP	chr3	49884958	-	MST1	chr3	49723395	-
In-frame	ENST00000215957	ENST00000412331		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
In-frame	ENST00000215957	ENST00000381683		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
In-frame	ENST00000215957	ENST00000406934		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
5CDS-intron	ENST00000215957	ENST00000476955		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
3UTR-3CDS	ENST00000402631	ENST00000412331		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
3UTR-3CDS	ENST00000402631	ENST00000381683		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
3UTR-3CDS	ENST00000402631	ENST00000406934		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
3UTR-intron	ENST00000402631	ENST00000476955		TCGA	LD	UCEC	TCGA-EO-A22U-01A	MICALL1	chr22	38323833	+	EIF3L	chr22	38282772	+
Frame-shit	ENST00000264094	ENST00000290536		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000264094	ENST00000409585		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000264094	ENST00000536235		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000264094	ENST00000358434		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5CDS-5UTR	ENST00000264094	ENST00000464686		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409249	ENST00000290536		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409249	ENST00000409585		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000409249	ENST00000536235		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409249	ENST00000358434		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5CDS-5UTR	ENST00000409249	ENST00000464686		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000393937	ENST00000290536		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000393937	ENST00000409585		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000393937	ENST00000536235		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000393937	ENST00000358434		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5CDS-5UTR	ENST00000393937	ENST00000464686		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409549	ENST00000290536		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409549	ENST00000409585		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000409549	ENST00000536235		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409549	ENST00000358434		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5CDS-5UTR	ENST00000409549	ENST00000464686		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000409986	ENST00000290536		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000409986	ENST00000409585		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
In-frame	ENST00000409986	ENST00000536235		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
Frame-shit	ENST00000409986	ENST00000358434		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5CDS-5UTR	ENST00000409986	ENST00000464686		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5UTR-3CDS	ENST00000484369	ENST00000290536		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5UTR-3CDS	ENST00000484369	ENST00000409585		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5UTR-3CDS	ENST00000484369	ENST00000536235		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5UTR-3CDS	ENST00000484369	ENST00000358434		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5UTR-5UTR	ENST00000484369	ENST00000464686		TCGA	LD	UCEC	TCGA-EO-A3AS-01A	LOXL3	chr2	74777312	-	M1AP	chr2	74786001	-
5UTR-3CDS	ENST00000331555	ENST00000274137		TCGA	LD	UCEC	TCGA-EO-A3AV-01A	C1orf186	chr1	206288105	+	NDUFS6	chr5	1814453	+
5UTR-3CDS	ENST00000331555	ENST00000469176		TCGA	LD	UCEC	TCGA-EO-A3AV-01A	C1orf186	chr1	206288105	+	NDUFS6	chr5	1814453	+
5UTR-intron	ENST00000331555	ENST00000510329		TCGA	LD	UCEC	TCGA-EO-A3AV-01A	C1orf186	chr1	206288105	+	NDUFS6	chr5	1814453	+
5UTR-3CDS	ENST00000469540	ENST00000274137		TCGA	LD	UCEC	TCGA-EO-A3AV-01A	C1orf186	chr1	206288105	+	NDUFS6	chr5	1814453	+
5UTR-3CDS	ENST00000469540	ENST00000469176		TCGA	LD	UCEC	TCGA-EO-A3AV-01A	C1orf186	chr1	206288105	+	NDUFS6	chr5	1814453	+
5UTR-intron	ENST00000469540	ENST00000510329		TCGA	LD	UCEC	TCGA-EO-A3AV-01A	C1orf186	chr1	206288105	+	NDUFS6	chr5	1814453	+
5CDS-5UTR	ENST00000555228	ENST00000482954		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000476279		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000247866		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000555228	ENST00000461457		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000555228	ENST00000465506		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000555228	ENST00000464564		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000555228	ENST00000204307		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000460088		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000472695		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000476470		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000471136		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555228	ENST00000475276		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000482954		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000476279		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000247866		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000555661	ENST00000461457		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000555661	ENST00000465506		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000555661	ENST00000464564		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000555661	ENST00000204307		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000460088		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000472695		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000476470		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000471136		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000555661	ENST00000475276		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000482954		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000476279		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000247866		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-intron	ENST00000553326	ENST00000461457		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-intron	ENST00000553326	ENST00000465506		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-3UTR	ENST00000553326	ENST00000464564		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-3UTR	ENST00000553326	ENST00000204307		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000460088		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000472695		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000476470		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000471136		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553326	ENST00000475276		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000482954		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000476279		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000247866		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000267568	ENST00000461457		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-intron	ENST00000267568	ENST00000465506		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000267568	ENST00000464564		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-3UTR	ENST00000267568	ENST00000204307		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000460088		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000472695		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000476470		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000471136		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
5CDS-5UTR	ENST00000267568	ENST00000475276		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000482954		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000476279		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000247866		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-intron	ENST00000553813	ENST00000461457		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-intron	ENST00000553813	ENST00000465506		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-3UTR	ENST00000553813	ENST00000464564		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-3UTR	ENST00000553813	ENST00000204307		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000460088		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000472695		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000476470		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000471136		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-5UTR	ENST00000553813	ENST00000475276		TCGA	LD	UCEC	TCGA-EO-A3AZ-01A	PTGR2	chr14	74340917	+	NDUFB2	chr7	140402666	+
intron-3CDS	ENST00000371953	ENST00000446394		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000371953	ENST00000371681		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000371953	ENST00000298068		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000371953	ENST00000536715		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000371953	ENST00000498446		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000371953	ENST00000371667		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-3CDS	ENST00000472832	ENST00000446394		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000472832	ENST00000371681		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000472832	ENST00000298068		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000472832	ENST00000536715		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000472832	ENST00000498446		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-intron	ENST00000472832	ENST00000371667		TCGA	LD	UCEC	TCGA-EO-A3B1-01A	PTEN	chr10	89624381	+	HECTD2	chr10	93260259	+
intron-3CDS	ENST00000341394	ENST00000261600		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-intron	ENST00000341394	ENST00000582313		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-3CDS	ENST00000389645	ENST00000261600		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-intron	ENST00000389645	ENST00000582313		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-3CDS	ENST00000532820	ENST00000261600		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-intron	ENST00000532820	ENST00000582313		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-3CDS	ENST00000530820	ENST00000261600		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-intron	ENST00000530820	ENST00000582313		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
5UTR-3CDS	ENST00000529307	ENST00000261600		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
5UTR-intron	ENST00000529307	ENST00000582313		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-3CDS	ENST00000533657	ENST00000261600		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
intron-intron	ENST00000533657	ENST00000582313		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	CAPRIN1	chr11	34074586	+	THOC1	chr18	224994	-
In-frame	ENST00000452400	ENST00000519824		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
In-frame	ENST00000452400	ENST00000522746		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
In-frame	ENST00000452400	ENST00000523509		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
In-frame	ENST00000452400	ENST00000401979		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
In-frame	ENST00000452400	ENST00000519110		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000452400	ENST00000522250		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000452400	ENST00000517654		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000452400	ENST00000519540		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-intron	ENST00000452400	ENST00000522941		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000452400	ENST00000518879		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
Frame-shit	ENST00000267974	ENST00000519824		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
Frame-shit	ENST00000267974	ENST00000522746		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
Frame-shit	ENST00000267974	ENST00000523509		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
Frame-shit	ENST00000267974	ENST00000401979		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
Frame-shit	ENST00000267974	ENST00000519110		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000267974	ENST00000522250		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000267974	ENST00000517654		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000267974	ENST00000519540		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-intron	ENST00000267974	ENST00000522941		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
5CDS-5UTR	ENST00000267974	ENST00000518879		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-3CDS	ENST00000524223	ENST00000519824		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-3CDS	ENST00000524223	ENST00000522746		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-3CDS	ENST00000524223	ENST00000523509		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-3CDS	ENST00000524223	ENST00000401979		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-3CDS	ENST00000524223	ENST00000519110		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-5UTR	ENST00000524223	ENST00000522250		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-5UTR	ENST00000524223	ENST00000517654		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-5UTR	ENST00000524223	ENST00000519540		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-intron	ENST00000524223	ENST00000522941		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
intron-5UTR	ENST00000524223	ENST00000518879		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NCOA2	chr8	71050438	-	FAM49B	chr8	130874580	-
Frame-shit	ENST00000318388	ENST00000380027		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
Frame-shit	ENST00000318388	ENST00000396855		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000318388	ENST00000305836		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000318388	ENST00000380034		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000318388	ENST00000396847		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-5UTR	ENST00000318388	ENST00000483835		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000318388	ENST00000396853		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-3CDS	ENST00000497577	ENST00000380027		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-3CDS	ENST00000497577	ENST00000396855		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-intron	ENST00000497577	ENST00000305836		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-intron	ENST00000497577	ENST00000380034		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-intron	ENST00000497577	ENST00000396847		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-5UTR	ENST00000497577	ENST00000483835		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
intron-intron	ENST00000497577	ENST00000396853		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
Frame-shit	ENST00000400033	ENST00000380027		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
Frame-shit	ENST00000400033	ENST00000396855		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000400033	ENST00000305836		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000400033	ENST00000380034		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000400033	ENST00000396847		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-5UTR	ENST00000400033	ENST00000483835		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
5CDS-intron	ENST00000400033	ENST00000396853		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-3CDS	ENST00000465096	ENST00000380027		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-3CDS	ENST00000465096	ENST00000396855		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-intron	ENST00000465096	ENST00000305836		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-intron	ENST00000465096	ENST00000380034		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-intron	ENST00000465096	ENST00000396847		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-5UTR	ENST00000465096	ENST00000483835		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
3UTR-intron	ENST00000465096	ENST00000396853		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	NDUFV2	chr18	9126905	+	TRIM5	chr11	5688941	-
Frame-shit	ENST00000339859	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000339859	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000339859	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000339859	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000339859	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
In-frame	ENST00000408019	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
In-frame	ENST00000408019	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
In-frame	ENST00000408019	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
In-frame	ENST00000408019	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
In-frame	ENST00000408019	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000428547	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000428547	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000428547	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000428547	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000428547	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000394811	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000394811	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000394811	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000394811	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000394811	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000497106	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000497106	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000497106	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000497106	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
5UTR-3CDS	ENST00000497106	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000422491	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000422491	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000422491	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000422491	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
intron-3CDS	ENST00000422491	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000319786	ENST00000453587		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000319786	ENST00000517608		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000319786	ENST00000602969		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000319786	ENST00000602593		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
Frame-shit	ENST00000319786	ENST00000419880		TCGA	LD	UCEC	TCGA-EO-A3KU-01A	USP54	chr10	75301133	-	UBE2W	chr8	74742707	-
3UTR-3CDS	ENST00000392259	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392259	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392259	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392259	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392259	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-intron	ENST00000392259	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392266	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392266	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392266	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392266	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-3CDS	ENST00000392266	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
3UTR-intron	ENST00000392266	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264274	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264274	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264274	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264274	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264274	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000264274	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000432109	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000432109	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000432109	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000432109	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000432109	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000432109	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264275	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264275	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264275	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264275	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000264275	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000264275	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000392258	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000392258	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000392258	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000392258	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000392258	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-intron	ENST00000392258	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000490682	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000490682	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000490682	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000490682	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-3CDS	ENST00000490682	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
intron-intron	ENST00000490682	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000358485	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000358485	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000358485	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000358485	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000358485	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000358485	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000323492	ENST00000262291		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000323492	ENST00000537567		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000323492	ENST00000539763		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000323492	ENST00000536180		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
In-frame	ENST00000323492	ENST00000545362		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
5CDS-intron	ENST00000323492	ENST00000588617		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	CASP8	chr2	202150040	+	VMP1	chr17	57915656	+
5UTR-5UTR	ENST00000064778	ENST00000355693		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000064778	ENST00000545127		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000064778	ENST00000541455		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000064778	ENST00000537289		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-intron	ENST00000064778	ENST00000537581		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000450446	ENST00000355693		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000450446	ENST00000545127		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000450446	ENST00000541455		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000450446	ENST00000537289		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-intron	ENST00000450446	ENST00000537581		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000356467	ENST00000355693		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000356467	ENST00000545127		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000356467	ENST00000541455		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-5UTR	ENST00000356467	ENST00000537289		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
5UTR-intron	ENST00000356467	ENST00000537581		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	FAM168A	chr11	73308968	-	COA4	chr11	73584439	-
In-frame	ENST00000327300	ENST00000373710		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
In-frame	ENST00000327300	ENST00000536859		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
In-frame	ENST00000327300	ENST00000373709		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
In-frame	ENST00000327300	ENST00000536384		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
5CDS-3UTR	ENST00000327300	ENST00000491976		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
3UTR-3CDS	ENST00000307714	ENST00000373710		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
3UTR-3CDS	ENST00000307714	ENST00000536859		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
3UTR-3CDS	ENST00000307714	ENST00000373709		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
3UTR-3CDS	ENST00000307714	ENST00000536384		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
3UTR-3UTR	ENST00000307714	ENST00000491976		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
intron-3CDS	ENST00000492989	ENST00000373710		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
intron-3CDS	ENST00000492989	ENST00000536859		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
intron-3CDS	ENST00000492989	ENST00000373709		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
intron-3CDS	ENST00000492989	ENST00000536384		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
intron-3UTR	ENST00000492989	ENST00000491976		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	KHDRBS1	chr1	32497241	+	SERINC2	chr1	31896540	+
Frame-shit	ENST00000345330	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000345330	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000345330	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000351217	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000351217	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000351217	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000542234	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000542234	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000542234	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000562924	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000562924	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000562924	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000563691	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000563691	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000563691	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000545878	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000545878	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000545878	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000287226	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
Frame-shit	ENST00000287226	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5CDS-5UTR	ENST00000287226	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5UTR-3CDS	ENST00000564551	ENST00000301729		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5UTR-3CDS	ENST00000564551	ENST00000562238		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
5UTR-5UTR	ENST00000564551	ENST00000570258		TCGA	LD	UCEC	TCGA-EO-A3KW-01A	NPTN	chr15	73925466	-	ECI1	chr16	2301430	-
intron-3CDS	ENST00000392627	ENST00000389916		TCGA	LD	UCEC	TCGA-EO-A3KX-01A	GPRC5C	chr17	72428662	+	KIF19	chr17	72339163	+
intron-3CDS	ENST00000342648	ENST00000389916		TCGA	LD	UCEC	TCGA-EO-A3KX-01A	GPRC5C	chr17	72428662	+	KIF19	chr17	72339163	+
intron-3CDS	ENST00000481232	ENST00000389916		TCGA	LD	UCEC	TCGA-EO-A3KX-01A	GPRC5C	chr17	72428662	+	KIF19	chr17	72339163	+
intron-3CDS	ENST00000392629	ENST00000389916		TCGA	LD	UCEC	TCGA-EO-A3KX-01A	GPRC5C	chr17	72428662	+	KIF19	chr17	72339163	+
intron-3CDS	ENST00000582873	ENST00000389916		TCGA	LD	UCEC	TCGA-EO-A3KX-01A	GPRC5C	chr17	72428662	+	KIF19	chr17	72339163	+
In-frame	ENST00000546530	ENST00000314045		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
In-frame	ENST00000546530	ENST00000306014		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5CDS-5UTR	ENST00000546530	ENST00000549271		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
In-frame	ENST00000261729	ENST00000314045		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
In-frame	ENST00000261729	ENST00000306014		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5CDS-5UTR	ENST00000261729	ENST00000549271		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
Frame-shit	ENST00000446861	ENST00000314045		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
Frame-shit	ENST00000446861	ENST00000306014		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5CDS-5UTR	ENST00000446861	ENST00000549271		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
Frame-shit	ENST00000548055	ENST00000314045		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
Frame-shit	ENST00000548055	ENST00000306014		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5CDS-5UTR	ENST00000548055	ENST00000549271		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5UTR-3CDS	ENST00000418411	ENST00000314045		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5UTR-3CDS	ENST00000418411	ENST00000306014		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
5UTR-5UTR	ENST00000418411	ENST00000549271		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	RASAL1	chr12	113553739	-	DDX54	chr12	113596914	-
In-frame	ENST00000301634	ENST00000409257		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000301634	ENST00000589256		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000301634	ENST00000588800		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000301634	ENST00000591952		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000301634	ENST00000327898		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000301634	ENST00000586731		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
5CDS-intron	ENST00000301634	ENST00000589664		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000405273	ENST00000409257		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000405273	ENST00000589256		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000405273	ENST00000588800		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000405273	ENST00000591952		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000405273	ENST00000327898		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000405273	ENST00000586731		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
5CDS-intron	ENST00000405273	ENST00000589664		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000588734	ENST00000409257		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000588734	ENST00000589256		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000588734	ENST00000588800		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000588734	ENST00000591952		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000588734	ENST00000327898		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000588734	ENST00000586731		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-intron	ENST00000588734	ENST00000589664		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000590862	ENST00000409257		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000590862	ENST00000589256		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000590862	ENST00000588800		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000590862	ENST00000591952		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000590862	ENST00000327898		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
In-frame	ENST00000590862	ENST00000586731		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
5CDS-intron	ENST00000590862	ENST00000589664		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000590430	ENST00000409257		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000590430	ENST00000589256		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000590430	ENST00000588800		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000590430	ENST00000591952		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000590430	ENST00000327898		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-3CDS	ENST00000590430	ENST00000586731		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
intron-intron	ENST00000590430	ENST00000589664		TCGA	LD	UCEC	TCGA-EY-A2ON-01A	TK1	chr17	76171131	-	AFMID	chr17	76187051	+
5UTR-3CDS	ENST00000378741	ENST00000317799		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
5UTR-3CDS	ENST00000378741	ENST00000405867		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
5UTR-3CDS	ENST00000378741	ENST00000537713		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
5UTR-3CDS	ENST00000378741	ENST00000545822		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
5UTR-3UTR	ENST00000378741	ENST00000494615		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
In-frame	ENST00000308647	ENST00000317799		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
In-frame	ENST00000308647	ENST00000405867		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
In-frame	ENST00000308647	ENST00000537713		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
In-frame	ENST00000308647	ENST00000545822		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
5CDS-3UTR	ENST00000308647	ENST00000494615		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
intron-3CDS	ENST00000378736	ENST00000317799		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
intron-3CDS	ENST00000378736	ENST00000405867		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
intron-3CDS	ENST00000378736	ENST00000537713		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
intron-3CDS	ENST00000378736	ENST00000545822		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
intron-3UTR	ENST00000378736	ENST00000494615		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ATAD3B	chr1	1407469	+	HADHB	chr2	26486248	+
Frame-shit	ENST00000225724	ENST00000261716		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
Frame-shit	ENST00000225724	ENST00000536202		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
Frame-shit	ENST00000451249	ENST00000261716		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
Frame-shit	ENST00000451249	ENST00000536202		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
Frame-shit	ENST00000467337	ENST00000261716		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
Frame-shit	ENST00000467337	ENST00000536202		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
intron-3CDS	ENST00000581721	ENST00000261716		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
intron-3CDS	ENST00000581721	ENST00000536202		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
intron-3CDS	ENST00000579905	ENST00000261716		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
intron-3CDS	ENST00000579905	ENST00000536202		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	GOSR1	chr17	28837927	+	TAOK1	chr17	27794163	+
5UTR-3CDS	ENST00000595618	ENST00000268766		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
5UTR-intron	ENST00000595618	ENST00000593261		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
5UTR-3CDS	ENST00000594824	ENST00000268766		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
5UTR-intron	ENST00000594824	ENST00000593261		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
intron-3CDS	ENST00000397274	ENST00000268766		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
intron-intron	ENST00000397274	ENST00000593261		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
intron-3CDS	ENST00000593411	ENST00000268766		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
intron-intron	ENST00000593411	ENST00000593261		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	MYO9B	chr19	17186684	+	NEK8	chr17	27067840	+
In-frame	ENST00000362042	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000362042	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000362042	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000362042	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000585291	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000585291	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000585291	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000585291	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000357480	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000357480	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000357480	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000357480	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000361665	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000361665	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000361665	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000361665	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
intron-3CDS	ENST00000579481	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
intron-3CDS	ENST00000579481	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
intron-3CDS	ENST00000579481	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
intron-intron	ENST00000579481	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000582155	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000582155	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000582155	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000582155	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000583378	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000583378	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000583378	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000583378	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000536222	ENST00000544840		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000536222	ENST00000434554		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
In-frame	ENST00000536222	ENST00000225573		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5CDS-intron	ENST00000536222	ENST00000534893		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	NFE2L1	chr17	46134864	+	PNPO	chr17	46020672	+
5UTR-3CDS	ENST00000353383	ENST00000268711		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
5UTR-intron	ENST00000353383	ENST00000580462		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
5UTR-intron	ENST00000353383	ENST00000585041		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
intron-3CDS	ENST00000489697	ENST00000268711		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
intron-intron	ENST00000489697	ENST00000580462		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
intron-intron	ENST00000489697	ENST00000585041		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
intron-3CDS	ENST00000261641	ENST00000268711		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
intron-intron	ENST00000261641	ENST00000580462		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
intron-intron	ENST00000261641	ENST00000585041		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	RAI1	chr17	17627473	+	MED9	chr17	17394593	+
In-frame	ENST00000253251	ENST00000302692		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	UBE4B	chr1	10209340	+	SLC25A33	chr1	9613684	+
In-frame	ENST00000377157	ENST00000302692		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	UBE4B	chr1	10209340	+	SLC25A33	chr1	9613684	+
In-frame	ENST00000343090	ENST00000302692		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	UBE4B	chr1	10209340	+	SLC25A33	chr1	9613684	+
intron-3CDS	ENST00000377153	ENST00000302692		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	UBE4B	chr1	10209340	+	SLC25A33	chr1	9613684	+
intron-3CDS	ENST00000475795	ENST00000302692		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	UBE4B	chr1	10209340	+	SLC25A33	chr1	9613684	+
intron-5UTR	ENST00000588651	ENST00000591462		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-5UTR	ENST00000588651	ENST00000252455		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-5UTR	ENST00000588651	ENST00000412601		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-5UTR	ENST00000588651	ENST00000592741		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-intron	ENST00000588651	ENST00000587327		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-intron	ENST00000588651	ENST00000589838		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-intron	ENST00000588651	ENST00000591510		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000361113	ENST00000591462		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000361113	ENST00000252455		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000361113	ENST00000412601		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000361113	ENST00000592741		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-intron	ENST00000361113	ENST00000587327		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-intron	ENST00000361113	ENST00000589838		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-intron	ENST00000361113	ENST00000591510		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000588174	ENST00000591462		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000588174	ENST00000252455		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000588174	ENST00000412601		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-5UTR	ENST00000588174	ENST00000592741		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-intron	ENST00000588174	ENST00000587327		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-intron	ENST00000588174	ENST00000589838		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
5CDS-intron	ENST00000588174	ENST00000591510		TCGA	LD	UCEC	TCGA-EY-A2OQ-01A	ZNF627	chr19	11708445	+	PRKCSH	chr19	11546466	+
intron-3CDS	ENST00000548446	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000548446	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000548446	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000548446	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-intron	ENST00000548446	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000420353	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000420353	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000420353	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000420353	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-intron	ENST00000420353	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000415113	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000415113	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000415113	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000415113	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-intron	ENST00000415113	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000456903	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000456903	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000456903	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000456903	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-intron	ENST00000456903	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000548118	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000548118	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000548118	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-3CDS	ENST00000548118	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5UTR-intron	ENST00000548118	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000591397	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000591397	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000591397	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000591397	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-intron	ENST00000591397	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000328463	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000328463	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000328463	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000328463	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-intron	ENST00000328463	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000546661	ENST00000430117		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000546661	ENST00000262059		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000546661	ENST00000548263		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-3CDS	ENST00000546661	ENST00000550804		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
intron-intron	ENST00000546661	ENST00000547885		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	ATF7	chr12	54019735	-	CALCOCO1	chr12	54113613	-
5CDS-3UTR	ENST00000372037	ENST00000593699		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000372037	ENST00000372499		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	78084159	+
5CDS-3UTR	ENST00000372037	ENST00000496424		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000480152	ENST00000593699		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000480152	ENST00000372499		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	78084159	+
intron-3UTR	ENST00000480152	ENST00000496424		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	BMPR1A	chr10	88659883	+	C10orf11	chr10	78084159	+
Frame-shit	ENST00000321153	ENST00000338675		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
Frame-shit	ENST00000321153	ENST00000382409		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
5CDS-intron	ENST00000321153	ENST00000525904		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
3UTR-3CDS	ENST00000532004	ENST00000338675		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
3UTR-3CDS	ENST00000532004	ENST00000382409		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
3UTR-intron	ENST00000532004	ENST00000525904		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
Frame-shit	ENST00000530797	ENST00000338675		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
Frame-shit	ENST00000530797	ENST00000382409		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
5CDS-intron	ENST00000530797	ENST00000525904		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	RPLP2	chr11	812633	+	DEAF1	chr11	644654	-
Frame-shit	ENST00000584667	ENST00000293218		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	SAP30BP	chr17	73667943	+	UNK	chr17	73805841	+
Frame-shit	ENST00000584667	ENST00000589666		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	SAP30BP	chr17	73667943	+	UNK	chr17	73805841	+
intron-3CDS	ENST00000355423	ENST00000293218		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	SAP30BP	chr17	73667943	+	UNK	chr17	73805841	+
intron-3CDS	ENST00000355423	ENST00000589666		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	SAP30BP	chr17	73667943	+	UNK	chr17	73805841	+
3UTR-3CDS	ENST00000579864	ENST00000293218		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	SAP30BP	chr17	73667943	+	UNK	chr17	73805841	+
3UTR-3CDS	ENST00000579864	ENST00000589666		TCGA	LD	UCEC	TCGA-EY-A3L3-01A	SAP30BP	chr17	73667943	+	UNK	chr17	73805841	+
Frame-shit	ENST00000359373	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000359373	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000359373	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
intron-3CDS	ENST00000495878	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
intron-3CDS	ENST00000495878	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
intron-3CDS	ENST00000495878	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000455638	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000455638	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000455638	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000393605	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000393605	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000393605	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000334211	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000334211	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000334211	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000393609	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000393609	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000393609	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000426523	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000426523	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000426523	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000429686	ENST00000420843		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000429686	ENST00000393505		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
Frame-shit	ENST00000429686	ENST00000360025		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ARAP1	chr11	72413950	-	ARRB1	chr11	75001083	-
5CDS-intron	ENST00000584601	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000406381	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000541774	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000445658	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000540147	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000584450	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000269571	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000578199	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000540042	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
intron-intron	ENST00000584888	ENST00000408388		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	ERBB2	chr17	37873733	+	PVT1	chr8	129108764	+
5CDS-intron	ENST00000335255	ENST00000285737		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	FOXK2	chr17	80544076	+	LONP2	chr16	48395388	+
5CDS-intron	ENST00000335255	ENST00000535754		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	FOXK2	chr17	80544076	+	LONP2	chr16	48395388	+
5CDS-3UTR	ENST00000335255	ENST00000564259		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	FOXK2	chr17	80544076	+	LONP2	chr16	48395388	+
intron-intron	ENST00000529652	ENST00000285737		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	FOXK2	chr17	80544076	+	LONP2	chr16	48395388	+
intron-intron	ENST00000529652	ENST00000535754		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	FOXK2	chr17	80544076	+	LONP2	chr16	48395388	+
intron-3UTR	ENST00000529652	ENST00000564259		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	FOXK2	chr17	80544076	+	LONP2	chr16	48395388	+
5CDS-5UTR	ENST00000580825	ENST00000309156		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000580825	ENST00000309185		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000580825	ENST00000394211		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000580825	ENST00000578702		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000580825	ENST00000445327		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000580825	ENST00000394209		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000580825	ENST00000394204		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000254079	ENST00000309156		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000254079	ENST00000309185		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000254079	ENST00000394211		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000254079	ENST00000578702		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000254079	ENST00000445327		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000254079	ENST00000394209		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000254079	ENST00000394204		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579000	ENST00000309156		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579000	ENST00000309185		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579000	ENST00000394211		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000579000	ENST00000578702		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000579000	ENST00000445327		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579000	ENST00000394209		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000579000	ENST00000394204		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394265	ENST00000309156		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394265	ENST00000309185		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394265	ENST00000394211		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394265	ENST00000578702		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394265	ENST00000445327		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394265	ENST00000394209		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394265	ENST00000394204		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394267	ENST00000309156		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394267	ENST00000309185		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394267	ENST00000394211		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394267	ENST00000578702		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-3UTR	ENST00000394267	ENST00000445327		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394267	ENST00000394209		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
5CDS-5UTR	ENST00000394267	ENST00000394204		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	PPP1R1B	chr17	37791979	+	GRB7	chr17	37898505	+
Frame-shit	ENST00000360001	ENST00000328432		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SDF4	chr1	1153838	-	PPP1R2	chr3	195256702	-
Frame-shit	ENST00000263741	ENST00000328432		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SDF4	chr1	1153838	-	PPP1R2	chr3	195256702	-
intron-3CDS	ENST00000545427	ENST00000328432		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SDF4	chr1	1153838	-	PPP1R2	chr3	195256702	-
intron-3CDS	ENST00000459994	ENST00000328432		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SDF4	chr1	1153838	-	PPP1R2	chr3	195256702	-
In-frame	ENST00000377387	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000377387	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
In-frame	ENST00000377390	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000377390	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
In-frame	ENST00000377394	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000377394	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
In-frame	ENST00000227503	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000227503	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
In-frame	ENST00000334944	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000334944	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5UTR-3CDS	ENST00000422298	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5UTR-5UTR	ENST00000422298	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
Frame-shit	ENST00000433274	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
5CDS-5UTR	ENST00000433274	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
intron-3CDS	ENST00000489544	ENST00000359600		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
intron-5UTR	ENST00000489544	ENST00000464588		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	SF1	chr11	64543970	-	ZSWIM5	chr1	45553909	-
intron-3UTR	ENST00000389327	ENST00000519067		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000389327	ENST00000433583		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000389327	ENST00000517878		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000389327	ENST00000024061		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000389327	ENST00000521804		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-3UTR	ENST00000389328	ENST00000519067		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000389328	ENST00000433583		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000389328	ENST00000517878		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000389328	ENST00000024061		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000389328	ENST00000521804		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-3UTR	ENST00000438773	ENST00000519067		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000438773	ENST00000433583		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000438773	ENST00000517878		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000438773	ENST00000024061		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000438773	ENST00000521804		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-3UTR	ENST00000522504	ENST00000519067		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000522504	ENST00000433583		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000522504	ENST00000517878		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000522504	ENST00000024061		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
intron-intron	ENST00000522504	ENST00000521804		TCGA	LD	UCEC	TCGA-EY-A3QX-01A	TRAPPC9	chr8	141436714	-	SLC45A4	chr8	142217424	-
5CDS-intron	ENST00000392332	ENST00000361099		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000392332	ENST00000409465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000392332	ENST00000540176		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000392332	ENST00000392322		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000392332	ENST00000392323		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000359678	ENST00000361099		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000359678	ENST00000409465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000359678	ENST00000540176		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000359678	ENST00000392322		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5CDS-intron	ENST00000359678	ENST00000392323		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000410045	ENST00000361099		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000410045	ENST00000409465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000410045	ENST00000540176		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000410045	ENST00000392322		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000410045	ENST00000392323		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000486981	ENST00000361099		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000486981	ENST00000409465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000486981	ENST00000540176		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000486981	ENST00000392322		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
intron-intron	ENST00000486981	ENST00000392323		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	HIBCH	chr2	191159272	-	STAT1	chr2	191829420	-
5UTR-3CDS	ENST00000537992	ENST00000278616		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
5UTR-3CDS	ENST00000537992	ENST00000452508		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
5UTR-intron	ENST00000537992	ENST00000525178		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
In-frame	ENST00000222573	ENST00000278616		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
In-frame	ENST00000222573	ENST00000452508		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
5CDS-intron	ENST00000222573	ENST00000525178		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
intron-3CDS	ENST00000460204	ENST00000278616		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
intron-3CDS	ENST00000460204	ENST00000452508		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
intron-intron	ENST00000460204	ENST00000525178		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	ITGB8	chr7	20403345	+	ATM	chr11	108137898	+
intron-3CDS	ENST00000400331	ENST00000278612		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
intron-5UTR	ENST00000400331	ENST00000610253		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
intron-3CDS	ENST00000332878	ENST00000278612		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
intron-5UTR	ENST00000332878	ENST00000610253		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
intron-3CDS	ENST00000589011	ENST00000278612		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
intron-5UTR	ENST00000589011	ENST00000610253		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
5UTR-3CDS	ENST00000471019	ENST00000278612		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
5UTR-5UTR	ENST00000471019	ENST00000610253		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	MACC1	chr7	20238148	-	NPAT	chr11	108068147	-
3UTR-3UTR	ENST00000318607	ENST00000520984		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000311212		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000519744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000517844		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000520347		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000519882		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000521272		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000318607	ENST00000518336		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-3UTR	ENST00000519004	ENST00000520984		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000311212		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000519744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000517844		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000520347		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000519882		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000521272		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000519004	ENST00000518336		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-3UTR	ENST00000522387	ENST00000520984		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000311212		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000519744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000517844		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000520347		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000519882		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000521272		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
3UTR-intron	ENST00000522387	ENST00000518336		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-3UTR	ENST00000519596	ENST00000520984		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000311212		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000519744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000517844		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000520347		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000519882		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000521272		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
intron-intron	ENST00000519596	ENST00000518336		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	PABPC1	chr8	101716525	-	ZNF706	chr8	102190615	-
In-frame	ENST00000382004	ENST00000223864		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000382004	ENST00000482696		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
In-frame	ENST00000358730	ENST00000223864		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000358730	ENST00000482696		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
In-frame	ENST00000302303	ENST00000223864		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000302303	ENST00000482696		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
In-frame	ENST00000381984	ENST00000223864		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000381984	ENST00000482696		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RFX3	chr9	3395472	-	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000508628	ENST00000397410		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000508628	ENST00000595465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
5CDS-intron	ENST00000508628	ENST00000595879		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-3CDS	ENST00000456466	ENST00000397410		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-3CDS	ENST00000456466	ENST00000595465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-intron	ENST00000456466	ENST00000595879		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000582970	ENST00000397410		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000582970	ENST00000595465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
5CDS-intron	ENST00000582970	ENST00000595879		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-3CDS	ENST00000319921	ENST00000397410		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-3CDS	ENST00000319921	ENST00000595465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-intron	ENST00000319921	ENST00000595879		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000336301	ENST00000397410		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000336301	ENST00000595465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
5CDS-intron	ENST00000336301	ENST00000595879		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-3CDS	ENST00000427003	ENST00000397410		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-3CDS	ENST00000427003	ENST00000595465		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
intron-intron	ENST00000427003	ENST00000595879		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	RNF213	chr17	78332279	+	AKAP8L	chr19	15521405	-
Frame-shit	ENST00000374759	ENST00000537330		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000374759	ENST00000570891		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000374759	ENST00000306801		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000374759	ENST00000544334		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5CDS-3UTR	ENST00000374759	ENST00000575542		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000288439	ENST00000537330		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000288439	ENST00000570891		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000288439	ENST00000306801		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
Frame-shit	ENST00000288439	ENST00000544334		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5CDS-3UTR	ENST00000288439	ENST00000575542		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5UTR-3CDS	ENST00000546352	ENST00000537330		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5UTR-3CDS	ENST00000546352	ENST00000570891		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5UTR-3CDS	ENST00000546352	ENST00000306801		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5UTR-3CDS	ENST00000546352	ENST00000544334		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
5UTR-3UTR	ENST00000546352	ENST00000575542		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SLC38A10	chr17	79244718	-	RPTOR	chr17	78796001	+
3UTR-3CDS	ENST00000579301	ENST00000225724		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SMURF2P1	chr17	28937960	+	GOSR1	chr17	28837898	+
3UTR-3CDS	ENST00000579301	ENST00000451249		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SMURF2P1	chr17	28937960	+	GOSR1	chr17	28837898	+
3UTR-3CDS	ENST00000579301	ENST00000467337		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SMURF2P1	chr17	28937960	+	GOSR1	chr17	28837898	+
3UTR-intron	ENST00000579301	ENST00000581721		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SMURF2P1	chr17	28937960	+	GOSR1	chr17	28837898	+
3UTR-intron	ENST00000579301	ENST00000579905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SMURF2P1	chr17	28937960	+	GOSR1	chr17	28837898	+
5CDS-intron	ENST00000458013	ENST00000353024		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000458013	ENST00000392712		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000458013	ENST00000368849		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000458013	ENST00000368848		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000458013	ENST00000538902		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368843	ENST00000353024		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368843	ENST00000392712		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368843	ENST00000368849		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368843	ENST00000368848		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368843	ENST00000538902		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368838	ENST00000353024		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368838	ENST00000392712		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368838	ENST00000368849		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368838	ENST00000368848		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
5CDS-intron	ENST00000368838	ENST00000538902		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
intron-intron	ENST00000482791	ENST00000353024		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
intron-intron	ENST00000482791	ENST00000392712		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
intron-intron	ENST00000482791	ENST00000368849		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
intron-intron	ENST00000482791	ENST00000368848		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
intron-intron	ENST00000482791	ENST00000538902		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	SNX27	chr1	151611595	+	TUFT1	chr1	151535061	+
In-frame	ENST00000334690	ENST00000262888		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	TRAPPC11	chr4	184589270	+	KCNN4	chr19	44276287	-
In-frame	ENST00000357207	ENST00000262888		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	TRAPPC11	chr4	184589270	+	KCNN4	chr19	44276287	-
3UTR-3CDS	ENST00000511409	ENST00000262888		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	TRAPPC11	chr4	184589270	+	KCNN4	chr19	44276287	-
intron-3CDS	ENST00000512476	ENST00000262888		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	TRAPPC11	chr4	184589270	+	KCNN4	chr19	44276287	-
5CDS-5UTR	ENST00000327028	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000327028	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000327028	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000327028	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000327028	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000343765	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000343765	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000343765	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000343765	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000343765	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000553888	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000553888	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000553888	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000553888	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000553888	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000557658	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000557658	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000557658	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000557658	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000557658	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000448935	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000448935	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000448935	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000448935	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000448935	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000556412	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000556412	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-5UTR	ENST00000556412	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000556412	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
5CDS-intron	ENST00000556412	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
intron-5UTR	ENST00000556909	ENST00000393684		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
intron-5UTR	ENST00000556909	ENST00000342219		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
intron-5UTR	ENST00000556909	ENST00000412904		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
intron-intron	ENST00000556909	ENST00000429906		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
intron-intron	ENST00000556909	ENST00000493585		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VIPAS39	chr14	77910592	-	ISM2	chr14	77951262	-
In-frame	ENST00000262291	ENST00000589222		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000262291	ENST00000407086		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000262291	ENST00000390652		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000262291	ENST00000408905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000262291	ENST00000588462		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000262291	ENST00000585744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000262291	ENST00000588874		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
5CDS-intron	ENST00000262291	ENST00000585812		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000589222		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000407086		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000390652		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000408905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000588462		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000585744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000537567	ENST00000588874		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
5CDS-intron	ENST00000537567	ENST00000585812		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000589222		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000407086		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000390652		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000408905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000588462		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000585744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000539763	ENST00000588874		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
5CDS-intron	ENST00000539763	ENST00000585812		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000589222		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000407086		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000390652		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000408905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000588462		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000585744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000536180	ENST00000588874		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
5CDS-intron	ENST00000536180	ENST00000585812		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000589222		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000407086		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000390652		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000408905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000588462		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000585744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000545362	ENST00000588874		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-intron	ENST00000545362	ENST00000585812		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000589222		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000407086		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000390652		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000408905		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000588462		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000585744		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-3CDS	ENST00000588617	ENST00000588874		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
intron-intron	ENST00000588617	ENST00000585812		TCGA	LD	UCEC	TCGA-EY-A4KR-01A	VMP1	chr17	57842499	+	BCAS3	chr17	59001768	+
In-frame	ENST00000238561	ENST00000557342		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000238561	ENST00000238688		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000238561	ENST00000557623		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000238561	ENST00000557431		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000341211	ENST00000557342		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000341211	ENST00000238688		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000341211	ENST00000557623		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
In-frame	ENST00000341211	ENST00000557431		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
intron-3CDS	ENST00000556560	ENST00000557342		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
intron-3CDS	ENST00000556560	ENST00000238688		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
intron-3CDS	ENST00000556560	ENST00000557623		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
intron-3CDS	ENST00000556560	ENST00000557431		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ADCK1	chr14	78288861	+	SLIRP	chr14	78182115	+
3UTR-3UTR	ENST00000584601	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-intron	ENST00000584601	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-3UTR	ENST00000406381	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-intron	ENST00000406381	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-3UTR	ENST00000541774	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-intron	ENST00000541774	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-3UTR	ENST00000445658	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-intron	ENST00000445658	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-3UTR	ENST00000540147	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-intron	ENST00000540147	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-3UTR	ENST00000584450	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-intron	ENST00000584450	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-3UTR	ENST00000269571	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
3UTR-intron	ENST00000269571	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-3UTR	ENST00000578199	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-intron	ENST00000578199	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-3UTR	ENST00000540042	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-intron	ENST00000540042	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-3UTR	ENST00000584888	ENST00000493862		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
intron-intron	ENST00000584888	ENST00000359114		TCGA	LD	UCEC	TCGA-EY-A54A-01A	ERBB2	chr17	37884523	+	NOL12	chr22	38077874	+
Frame-shit	ENST00000346178	ENST00000336232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
Frame-shit	ENST00000346178	ENST00000545207		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000346178	ENST00000535878		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000346178	ENST00000311438		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000346178	ENST00000430500		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000346178	ENST00000542795		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
Frame-shit	ENST00000356638	ENST00000336232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
Frame-shit	ENST00000356638	ENST00000545207		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000356638	ENST00000535878		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000356638	ENST00000311438		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000356638	ENST00000430500		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000356638	ENST00000542795		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
Frame-shit	ENST00000534779	ENST00000336232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
Frame-shit	ENST00000534779	ENST00000545207		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000534779	ENST00000535878		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000534779	ENST00000311438		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000534779	ENST00000430500		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000534779	ENST00000542795		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
In-frame	ENST00000540933	ENST00000336232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
In-frame	ENST00000540933	ENST00000545207		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000540933	ENST00000535878		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000540933	ENST00000311438		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000540933	ENST00000430500		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
5CDS-5UTR	ENST00000540933	ENST00000542795		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
intron-3CDS	ENST00000534422	ENST00000336232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
intron-3CDS	ENST00000534422	ENST00000545207		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
intron-5UTR	ENST00000534422	ENST00000535878		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
intron-5UTR	ENST00000534422	ENST00000311438		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
intron-5UTR	ENST00000534422	ENST00000430500		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
intron-5UTR	ENST00000534422	ENST00000542795		TCGA	LD	UCEC	TCGA-EY-A54A-01A	GANAB	chr11	62396241	-	SLC22A8	chr11	62768295	-
Frame-shit	ENST00000402983	ENST00000357155		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000402983	ENST00000477962		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
Frame-shit	ENST00000370031	ENST00000357155		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000370031	ENST00000477962		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
Frame-shit	ENST00000370032	ENST00000357155		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000370032	ENST00000477962		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
5UTR-3CDS	ENST00000493676	ENST00000357155		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
5UTR-intron	ENST00000493676	ENST00000477962		TCGA	LD	UCEC	TCGA-EY-A54A-01A	HENMT1	chr1	109197338	-	MYBPHL	chr1	109840879	-
5CDS-intron	ENST00000374865	ENST00000374847		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-intron	ENST00000374865	ENST00000374848		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-5UTR	ENST00000374865	ENST00000374851		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-intron	ENST00000374865	ENST00000482920		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-intron	ENST00000539624	ENST00000374847		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-intron	ENST00000539624	ENST00000374848		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-5UTR	ENST00000539624	ENST00000374851		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
5CDS-intron	ENST00000539624	ENST00000482920		TCGA	LD	UCEC	TCGA-EY-A54A-01A	MRPL50	chr9	104160783	-	TMEM246	chr9	104251482	-
3UTR-5UTR	ENST00000493862	ENST00000336308		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
3UTR-intron	ENST00000493862	ENST00000578232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
3UTR-5UTR	ENST00000493862	ENST00000544210		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
3UTR-5UTR	ENST00000493862	ENST00000394250		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
3UTR-5UTR	ENST00000493862	ENST00000580611		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000359114	ENST00000336308		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000359114	ENST00000578232		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000359114	ENST00000544210		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000359114	ENST00000394250		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000359114	ENST00000580611		TCGA	LD	UCEC	TCGA-EY-A54A-01A	NOL12	chr22	38084022	+	STARD3	chr17	37809734	+
5CDS-3UTR	ENST00000580170	ENST00000339368		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000580170	ENST00000509152		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000580170	ENST00000526473		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000332175	ENST00000339368		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000332175	ENST00000509152		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000332175	ENST00000526473		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000400060	ENST00000339368		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000400060	ENST00000509152		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000400060	ENST00000526473		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000400053	ENST00000339368		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000400053	ENST00000509152		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000400053	ENST00000526473		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000444013	ENST00000339368		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000444013	ENST00000509152		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
5CDS-3UTR	ENST00000444013	ENST00000526473		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
3UTR-3UTR	ENST00000578571	ENST00000339368		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
3UTR-3UTR	ENST00000578571	ENST00000509152		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
3UTR-3UTR	ENST00000578571	ENST00000526473		TCGA	LD	UCEC	TCGA-EY-A54A-01A	PTPRM	chr18	8069992	+	ZNF595	chr4	59323	+
Frame-shit	ENST00000262519	ENST00000344771		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SETD1A	chr16	30991978	+	SRCAP	chr16	30744601	+
Frame-shit	ENST00000262519	ENST00000395059		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SETD1A	chr16	30991978	+	SRCAP	chr16	30744601	+
Frame-shit	ENST00000262519	ENST00000262518		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SETD1A	chr16	30991978	+	SRCAP	chr16	30744601	+
In-frame	ENST00000268704	ENST00000505956		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SPG7	chr16	89599044	+	EFCAB12	chr3	129140646	-
In-frame	ENST00000268704	ENST00000326085		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SPG7	chr16	89599044	+	EFCAB12	chr3	129140646	-
In-frame	ENST00000341316	ENST00000505956		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SPG7	chr16	89599044	+	EFCAB12	chr3	129140646	-
In-frame	ENST00000341316	ENST00000326085		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SPG7	chr16	89599044	+	EFCAB12	chr3	129140646	-
intron-3CDS	ENST00000565891	ENST00000505956		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SPG7	chr16	89599044	+	EFCAB12	chr3	129140646	-
intron-3CDS	ENST00000565891	ENST00000326085		TCGA	LD	UCEC	TCGA-EY-A54A-01A	SPG7	chr16	89599044	+	EFCAB12	chr3	129140646	-
5CDS-intron	ENST00000317568	ENST00000279281		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
5CDS-intron	ENST00000317568	ENST00000527646		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
intron-intron	ENST00000531296	ENST00000279281		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
intron-intron	ENST00000531296	ENST00000527646		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
5CDS-intron	ENST00000355991	ENST00000279281		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
5CDS-intron	ENST00000355991	ENST00000527646		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
intron-intron	ENST00000416776	ENST00000279281		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
intron-intron	ENST00000416776	ENST00000527646		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	FRMD8	chr11	65161145	+	VPS51	chr11	64874659	+
5CDS-intron	ENST00000392272	ENST00000567134		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000392272	ENST00000308588		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000392272	ENST00000564644		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000392272	ENST00000371091		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000392272	ENST00000564675		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000368173	ENST00000567134		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000368173	ENST00000308588		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000368173	ENST00000564644		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000368173	ENST00000371091		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000368173	ENST00000564675		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000360089	ENST00000567134		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000360089	ENST00000308588		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000360089	ENST00000564644		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000360089	ENST00000371091		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000360089	ENST00000564675		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000359209	ENST00000567134		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000359209	ENST00000308588		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000359209	ENST00000564644		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000359209	ENST00000371091		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
5CDS-intron	ENST00000359209	ENST00000564675		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000416935	ENST00000567134		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000416935	ENST00000308588		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000416935	ENST00000564644		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000416935	ENST00000371091		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000416935	ENST00000564675		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000368172	ENST00000567134		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000368172	ENST00000308588		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000368172	ENST00000564644		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000368172	ENST00000371091		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
intron-intron	ENST00000368172	ENST00000564675		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	KIRREL	chr1	158046052	+	SNUPN	chr15	75918712	-
Frame-shit	ENST00000335263	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000335263	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000424963	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000424963	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
Frame-shit	ENST00000322340	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000322340	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-3CDS	ENST00000499851	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000499851	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
Frame-shit	ENST00000342702	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000342702	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000556807	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556807	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
Frame-shit	ENST00000558567	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000558567	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000299135	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000299135	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
Frame-shit	ENST00000454394	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5CDS-intron	ENST00000454394	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000556511	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-intron	ENST00000556511	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-3CDS	ENST00000557186	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
3UTR-intron	ENST00000557186	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-3CDS	ENST00000545563	ENST00000422945		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000556068		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000554442		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000328724		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000350249		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000445439		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000334743		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000557095		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000556260		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000556946		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
5UTR-intron	ENST00000545563	ENST00000557714		TCGA	LD	UCEC	TCGA-FI-A3PV-01A	WDR20	chr14	102661457	+	PPP2R5C	chr14	102323023	+
intron-3CDS	ENST00000405271	ENST00000272286		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	EPCAM	chr2	47596720	+	ABCG8	chr2	44071646	+
Frame-shit	ENST00000263735	ENST00000272286		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	EPCAM	chr2	47596720	+	ABCG8	chr2	44071646	+
5CDS-intron	ENST00000368323	ENST00000438568		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368323	ENST00000369054		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368323	ENST00000369064		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368323	ENST00000606933		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-3UTR	ENST00000368323	ENST00000463555		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000539040	ENST00000438568		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000539040	ENST00000369054		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000539040	ENST00000369064		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000539040	ENST00000606933		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-3UTR	ENST00000539040	ENST00000463555		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368322	ENST00000438568		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368322	ENST00000369054		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368322	ENST00000369064		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000368322	ENST00000606933		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-3UTR	ENST00000368322	ENST00000463555		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	RIT1	chr1	155874102	-	TARS2	chr1	150476811	+
5CDS-intron	ENST00000399537	ENST00000609686		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	TNRC18	chr7	5413686	-	GRIN2B	chr12	13590945	-
5CDS-intron	ENST00000430969	ENST00000609686		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	TNRC18	chr7	5413686	-	GRIN2B	chr12	13590945	-
intron-intron	ENST00000399434	ENST00000609686		TCGA	LD	UCEC	TCGA-FI-A3PX-01A	TNRC18	chr7	5413686	-	GRIN2B	chr12	13590945	-
Frame-shit	ENST00000539605	ENST00000389100		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000539605	ENST00000296615		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000539605	ENST00000381081		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000357997	ENST00000389100		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000357997	ENST00000296615		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000357997	ENST00000381081		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000542282	ENST00000389100		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000542282	ENST00000296615		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000542282	ENST00000381081		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000542657	ENST00000389100		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000542657	ENST00000296615		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000542657	ENST00000381081		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
5UTR-3CDS	ENST00000542374	ENST00000389100		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
5UTR-3CDS	ENST00000542374	ENST00000296615		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
5UTR-3CDS	ENST00000542374	ENST00000381081		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000337516	ENST00000389100		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000337516	ENST00000296615		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
Frame-shit	ENST00000337516	ENST00000381081		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ANKLE2	chr12	133311992	-	RNF180	chr5	63513188	+
intron-3CDS	ENST00000352432	ENST00000455809		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000352432	ENST00000273037		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000352432	ENST00000444133		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000343816	ENST00000455809		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000343816	ENST00000273037		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000343816	ENST00000444133		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000360273	ENST00000455809		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000360273	ENST00000273037		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000360273	ENST00000444133		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000383800	ENST00000455809		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000383800	ENST00000273037		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000383800	ENST00000444133		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
5UTR-3CDS	ENST00000397077	ENST00000455809		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
5UTR-3CDS	ENST00000397077	ENST00000273037		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
5UTR-3CDS	ENST00000397077	ENST00000444133		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000467702	ENST00000455809		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000467702	ENST00000273037		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
intron-3CDS	ENST00000467702	ENST00000444133		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	ATP2B2	chr3	10575723	-	TAMM41	chr3	11851156	-
5CDS-intron	ENST00000254480	ENST00000341885		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5CDS-intron	ENST00000254480	ENST00000468695		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5CDS-5UTR	ENST00000254480	ENST00000492007		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5CDS-5UTR	ENST00000254480	ENST00000373501		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5UTR-intron	ENST00000425518	ENST00000341885		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5UTR-intron	ENST00000425518	ENST00000468695		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5UTR-5UTR	ENST00000425518	ENST00000492007		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5UTR-5UTR	ENST00000425518	ENST00000373501		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SMARCC1	chr3	47651556	-	ZBTB8OS	chr1	33093145	-
5CDS-intron	ENST00000346348	ENST00000384338		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000346348	ENST00000364995		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000314673	ENST00000384338		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000314673	ENST00000364995		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000513865	ENST00000384338		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000513865	ENST00000364995		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
intron-intron	ENST00000505648	ENST00000384338		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
intron-intron	ENST00000505648	ENST00000364995		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
intron-intron	ENST00000508980	ENST00000384338		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
intron-intron	ENST00000508980	ENST00000364995		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000369627	ENST00000384338		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
5CDS-intron	ENST00000369627	ENST00000364995		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	SNX14	chr6	86303297	-	SNHG5	chr6	86375865	-
In-frame	ENST00000366514	ENST00000541742		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
In-frame	ENST00000366514	ENST00000490107		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
In-frame	ENST00000366514	ENST00000388985		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
5CDS-5UTR	ENST00000366514	ENST00000366517		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
5CDS-intron	ENST00000366514	ENST00000403792		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
3UTR-3CDS	ENST00000544618	ENST00000541742		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
3UTR-3CDS	ENST00000544618	ENST00000490107		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
3UTR-3CDS	ENST00000544618	ENST00000388985		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
3UTR-5UTR	ENST00000544618	ENST00000366517		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
3UTR-intron	ENST00000544618	ENST00000403792		TCGA	LD	UCEC	TCGA-H5-A2HR-01A	TFB2M	chr1	246719875	-	SMYD3	chr1	246027188	-
5CDS-5UTR	ENST00000589222	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000589222	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000589222	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000589222	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000589222	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000407086	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000407086	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000407086	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000407086	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000407086	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000390652	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000390652	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000390652	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000390652	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000390652	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000408905	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000408905	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000408905	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000408905	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000408905	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000588462	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000588462	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-5UTR	ENST00000588462	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000588462	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
5CDS-intron	ENST00000588462	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000585744	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000585744	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000585744	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000585744	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000585744	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000588874	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000588874	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000588874	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000588874	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000588874	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000585812	ENST00000304046		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000585812	ENST00000579695		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-5UTR	ENST00000585812	ENST00000394169		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000585812	ENST00000584220		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
intron-intron	ENST00000585812	ENST00000582052		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	BCAS3	chr17	58786686	+	ORMDL3	chr17	38080478	-
Frame-shit	ENST00000315843	ENST00000295633		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000315843	ENST00000424703		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000315843	ENST00000485968		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
In-frame	ENST00000464295	ENST00000295633		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000464295	ENST00000424703		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000464295	ENST00000485968		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
Frame-shit	ENST00000461057	ENST00000295633		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000461057	ENST00000424703		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000461057	ENST00000485968		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	GPR156	chr3	119962487	-	FSTL1	chr3	120134874	-
5UTR-3CDS	ENST00000587885	ENST00000343587		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000587885	ENST00000242770		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000587885	ENST00000589083		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000587885	ENST00000587230		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000292433	ENST00000343587		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000292433	ENST00000242770		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000292433	ENST00000589083		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
5UTR-3CDS	ENST00000292433	ENST00000587230		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
intron-3CDS	ENST00000588173	ENST00000343587		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
intron-3CDS	ENST00000588173	ENST00000242770		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
intron-3CDS	ENST00000588173	ENST00000589083		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
intron-3CDS	ENST00000588173	ENST00000587230		TCGA	LD	UCEC	TCGA-KJ-A3U4-01A	IER2	chr19	13261366	+	STX10	chr19	13255630	-
Frame-shit	ENST00000535787	ENST00000258484		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000535787	ENST00000409654		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000241416	ENST00000258484		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000241416	ENST00000409654		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000404590	ENST00000258484		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
Frame-shit	ENST00000404590	ENST00000409654		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
intron-3CDS	ENST00000495775	ENST00000258484		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
intron-3CDS	ENST00000495775	ENST00000409654		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ACVR2A	chr2	148676161	+	EPC2	chr2	149447783	+
intron-3CDS	ENST00000378119	ENST00000430948		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378119	ENST00000535378		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378119	ENST00000537886		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378119	ENST00000378214		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378119	ENST00000543707		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000540769	ENST00000430948		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000540769	ENST00000535378		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000540769	ENST00000537886		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000540769	ENST00000378214		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000540769	ENST00000543707		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378102	ENST00000430948		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378102	ENST00000535378		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378102	ENST00000537886		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378102	ENST00000378214		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
intron-3CDS	ENST00000378102	ENST00000543707		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	C6orf62	chr6	24716329	-	KIAA0319	chr6	24596295	-
Frame-shit	ENST00000401084	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
Frame-shit	ENST00000401084	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-5UTR	ENST00000401084	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-5UTR	ENST00000401084	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-3CDS	ENST00000264203	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-3CDS	ENST00000264203	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-5UTR	ENST00000264203	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-5UTR	ENST00000264203	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
Frame-shit	ENST00000375142	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
Frame-shit	ENST00000375142	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-5UTR	ENST00000375142	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-5UTR	ENST00000375142	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-3CDS	ENST00000433834	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-3CDS	ENST00000433834	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-5UTR	ENST00000433834	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-5UTR	ENST00000433834	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
Frame-shit	ENST00000264202	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
Frame-shit	ENST00000264202	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-5UTR	ENST00000264202	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-5UTR	ENST00000264202	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-3CDS	ENST00000482808	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-3CDS	ENST00000482808	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-5UTR	ENST00000482808	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5UTR-5UTR	ENST00000482808	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-3CDS	ENST00000375144	ENST00000294543		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-3CDS	ENST00000375144	ENST00000375127		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-5UTR	ENST00000375144	ENST00000489814		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
intron-5UTR	ENST00000375144	ENST00000375122		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20021044	-
5CDS-intron	ENST00000301607	ENST00000584667		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	EVPL	chr17	74017549	-	SAP30BP	chr17	73687474	+
5CDS-intron	ENST00000301607	ENST00000355423		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	EVPL	chr17	74017549	-	SAP30BP	chr17	73687474	+
5CDS-intron	ENST00000301607	ENST00000579864		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	EVPL	chr17	74017549	-	SAP30BP	chr17	73687474	+
5CDS-intron	ENST00000586740	ENST00000584667		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	EVPL	chr17	74017549	-	SAP30BP	chr17	73687474	+
5CDS-intron	ENST00000586740	ENST00000355423		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	EVPL	chr17	74017549	-	SAP30BP	chr17	73687474	+
5CDS-intron	ENST00000586740	ENST00000579864		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	EVPL	chr17	74017549	-	SAP30BP	chr17	73687474	+
intron-3CDS	ENST00000221419	ENST00000322175		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	HNRNPL	chr19	39331741	-	TPRX1	chr19	48306028	-
intron-3CDS	ENST00000221419	ENST00000535759		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	HNRNPL	chr19	39331741	-	TPRX1	chr19	48306028	-
intron-3CDS	ENST00000221419	ENST00000543508		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	HNRNPL	chr19	39331741	-	TPRX1	chr19	48306028	-
intron-3CDS	ENST00000600873	ENST00000322175		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	HNRNPL	chr19	39331741	-	TPRX1	chr19	48306028	-
intron-3CDS	ENST00000600873	ENST00000535759		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	HNRNPL	chr19	39331741	-	TPRX1	chr19	48306028	-
intron-3CDS	ENST00000600873	ENST00000543508		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	HNRNPL	chr19	39331741	-	TPRX1	chr19	48306028	-
5UTR-intron	ENST00000533760	ENST00000515029		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
5UTR-intron	ENST00000533760	ENST00000393067		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
3UTR-intron	ENST00000397957	ENST00000515029		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
3UTR-intron	ENST00000397957	ENST00000393067		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
intron-intron	ENST00000316851	ENST00000515029		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
intron-intron	ENST00000316851	ENST00000393067		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
intron-intron	ENST00000401611	ENST00000515029		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
intron-intron	ENST00000401611	ENST00000393067		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	NCAM1	chr11	112832386	+	POU2AF1	chr11	111229643	-
Frame-shit	ENST00000348715	ENST00000259213		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000348715	ENST00000327407		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000397647	ENST00000259213		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000397647	ENST00000327407		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000263335	ENST00000259213		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000263335	ENST00000327407		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000429538	ENST00000259213		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000429538	ENST00000327407		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000263334	ENST00000259213		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
Frame-shit	ENST00000263334	ENST00000327407		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	PAX8	chr2	114035947	-	IL36B	chr2	113788732	-
In-frame	ENST00000389100	ENST00000381070		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
5CDS-intron	ENST00000389100	ENST00000508024		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
5CDS-3UTR	ENST00000389100	ENST00000545000		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
intron-3CDS	ENST00000296615	ENST00000381070		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
intron-intron	ENST00000296615	ENST00000508024		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
intron-3UTR	ENST00000296615	ENST00000545000		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
intron-3CDS	ENST00000381081	ENST00000381070		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
intron-intron	ENST00000381081	ENST00000508024		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
intron-3UTR	ENST00000381081	ENST00000545000		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	RNF180	chr5	63626233	+	CWC27	chr5	64267530	+
Frame-shit	ENST00000503823	ENST00000503585		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000360916		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000295290		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000444671		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000502374		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
In-frame	ENST00000503823	ENST00000538990		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000502938		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000507634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503823	ENST00000513459		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
5CDS-intron	ENST00000503823	ENST00000508753		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000503585		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000360916		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000295290		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000444671		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000502374		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
In-frame	ENST00000504154	ENST00000538990		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000502938		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000507634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000504154	ENST00000513459		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
5CDS-intron	ENST00000504154	ENST00000508753		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000503585		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000360916		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000295290		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000444671		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000502374		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
In-frame	ENST00000273739	ENST00000538990		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000502938		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000507634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000273739	ENST00000513459		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
5CDS-intron	ENST00000273739	ENST00000508753		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000503585		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000360916		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000295290		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000444671		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000502374		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
In-frame	ENST00000503837	ENST00000538990		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000502938		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000507634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
Frame-shit	ENST00000503837	ENST00000513459		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
5CDS-intron	ENST00000503837	ENST00000508753		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000503585		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000360916		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000295290		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000444671		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000502374		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000538990		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000502938		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000507634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-3CDS	ENST00000509394	ENST00000513459		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
intron-intron	ENST00000509394	ENST00000508753		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	SLIT2	chr4	20270504	+	PACRGL	chr4	20728908	+
5UTR-3CDS	ENST00000575752	ENST00000576634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-3CDS	ENST00000575752	ENST00000341633		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-5UTR	ENST00000575752	ENST00000417763		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-5UTR	ENST00000575752	ENST00000571025		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-intron	ENST00000575752	ENST00000572600		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-intron	ENST00000575752	ENST00000445795		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-3CDS	ENST00000571936	ENST00000576634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-3CDS	ENST00000571936	ENST00000341633		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-5UTR	ENST00000571936	ENST00000417763		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-5UTR	ENST00000571936	ENST00000571025		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-intron	ENST00000571936	ENST00000572600		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-intron	ENST00000571936	ENST00000445795		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-3CDS	ENST00000344823	ENST00000576634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-3CDS	ENST00000344823	ENST00000341633		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-5UTR	ENST00000344823	ENST00000417763		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-5UTR	ENST00000344823	ENST00000571025		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-intron	ENST00000344823	ENST00000572600		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5UTR-intron	ENST00000344823	ENST00000445795		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-3CDS	ENST00000268655	ENST00000576634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-3CDS	ENST00000268655	ENST00000341633		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-5UTR	ENST00000268655	ENST00000417763		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-5UTR	ENST00000268655	ENST00000571025		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-intron	ENST00000268655	ENST00000572600		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-intron	ENST00000268655	ENST00000445795		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-3CDS	ENST00000572544	ENST00000576634		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-3CDS	ENST00000572544	ENST00000341633		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-5UTR	ENST00000572544	ENST00000417763		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-5UTR	ENST00000572544	ENST00000571025		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-intron	ENST00000572544	ENST00000572600		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
intron-intron	ENST00000572544	ENST00000445795		TCGA	LD	UCEC	TCGA-KP-A3VZ-01A	ZNF174	chr16	3451270	+	CLUAP1	chr16	3562383	+
5CDS-intron	ENST00000358502	ENST00000360835		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-intron	ENST00000358502	ENST00000290460		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-5UTR	ENST00000358502	ENST00000470433		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-intron	ENST00000249066	ENST00000360835		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-intron	ENST00000249066	ENST00000290460		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-5UTR	ENST00000249066	ENST00000470433		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-intron	ENST00000451256	ENST00000360835		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-intron	ENST00000451256	ENST00000290460		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
5CDS-5UTR	ENST00000451256	ENST00000470433		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
intron-intron	ENST00000476579	ENST00000360835		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
intron-intron	ENST00000476579	ENST00000290460		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
intron-5UTR	ENST00000476579	ENST00000470433		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	APOL2	chr22	36627386	-	SCUBE1	chr22	43666595	-
Frame-shit	ENST00000339594	ENST00000223368		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72957974	-
Frame-shit	ENST00000339594	ENST00000411832		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72957974	-
5CDS-5UTR	ENST00000339594	ENST00000482231		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72957974	-
Frame-shit	ENST00000404251	ENST00000223368		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72957974	-
Frame-shit	ENST00000404251	ENST00000411832		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72957974	-
5CDS-5UTR	ENST00000404251	ENST00000482231		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	BAZ1B	chr7	72879769	-	BCL7B	chr7	72957974	-
5CDS-5UTR	ENST00000537098	ENST00000566936		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
5CDS-5UTR	ENST00000537098	ENST00000340099		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
5CDS-5UTR	ENST00000537098	ENST00000569548		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
5CDS-5UTR	ENST00000537098	ENST00000561918		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000539778	ENST00000566936		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000539778	ENST00000340099		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000539778	ENST00000569548		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000539778	ENST00000561918		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000566513	ENST00000566936		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000566513	ENST00000340099		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000566513	ENST00000569548		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000566513	ENST00000561918		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000398040	ENST00000566936		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000398040	ENST00000340099		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000398040	ENST00000569548		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-5UTR	ENST00000398040	ENST00000561918		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	CMIP	chr16	81479146	+	DOK4	chr16	57513597	-
intron-3CDS	ENST00000476258	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000476258	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000476258	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000476258	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000476258	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-5UTR	ENST00000476258	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-3CDS	ENST00000405458	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-3CDS	ENST00000405458	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000405458	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000405458	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000405458	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-5UTR	ENST00000405458	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
Frame-shit	ENST00000409753	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
Frame-shit	ENST00000409753	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000409753	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000409753	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000409753	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-5UTR	ENST00000409753	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000482348	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000482348	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000482348	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000482348	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000482348	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-5UTR	ENST00000482348	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
Frame-shit	ENST00000356033	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
Frame-shit	ENST00000356033	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000356033	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000356033	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000356033	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-5UTR	ENST00000356033	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000470924	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000470924	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000470924	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000470924	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000470924	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-5UTR	ENST00000470924	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000481647	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-3CDS	ENST00000481647	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000481647	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000481647	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-intron	ENST00000481647	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
intron-5UTR	ENST00000481647	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-3CDS	ENST00000392566	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-3CDS	ENST00000392566	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000392566	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000392566	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000392566	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-5UTR	ENST00000392566	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
Frame-shit	ENST00000581874	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
Frame-shit	ENST00000581874	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000581874	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000581874	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-intron	ENST00000581874	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-5UTR	ENST00000581874	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-3CDS	ENST00000465454	ENST00000423245		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-3CDS	ENST00000465454	ENST00000317905		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000465454	ENST00000420326		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000465454	ENST00000340830		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-intron	ENST00000465454	ENST00000584999		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5UTR-5UTR	ENST00000465454	ENST00000443199		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	HN1	chr17	73150437	-	RECQL5	chr17	73627748	-
5CDS-5UTR	ENST00000448612	ENST00000608456		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000448612	ENST00000368377		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000448612	ENST00000608295		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000448612	ENST00000398153		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000448612	ENST00000608284		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-5UTR	ENST00000423258	ENST00000608456		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000423258	ENST00000368377		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000423258	ENST00000608295		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000423258	ENST00000398153		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000423258	ENST00000608284		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-5UTR	ENST00000333572	ENST00000608456		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000333572	ENST00000368377		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000333572	ENST00000608295		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000333572	ENST00000398153		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5CDS-intron	ENST00000333572	ENST00000608284		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5UTR-5UTR	ENST00000546525	ENST00000608456		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5UTR-intron	ENST00000546525	ENST00000368377		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5UTR-intron	ENST00000546525	ENST00000608295		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5UTR-intron	ENST00000546525	ENST00000398153		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
5UTR-intron	ENST00000546525	ENST00000608284		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
intron-5UTR	ENST00000420344	ENST00000608456		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
intron-intron	ENST00000420344	ENST00000368377		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
intron-intron	ENST00000420344	ENST00000608295		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
intron-intron	ENST00000420344	ENST00000398153		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
intron-intron	ENST00000420344	ENST00000608284		TCGA	LD	UCEC	TCGA-KP-A3W1-01A	WDR27	chr6	169982932	-	HDDC2	chr6	125541298	-
Frame-shit	ENST00000503362	ENST00000280193		TCGA	LD	UCEC	TCGA-KP-A3W3-01A	SPCS3	chr4	177241370	+	VEGFC	chr4	177650900	-
5CDS-intron	ENST00000503362	ENST00000507638		TCGA	LD	UCEC	TCGA-KP-A3W3-01A	SPCS3	chr4	177241370	+	VEGFC	chr4	177650900	-
intron-3CDS	ENST00000507001	ENST00000280193		TCGA	LD	UCEC	TCGA-KP-A3W3-01A	SPCS3	chr4	177241370	+	VEGFC	chr4	177650900	-
intron-intron	ENST00000507001	ENST00000507638		TCGA	LD	UCEC	TCGA-KP-A3W3-01A	SPCS3	chr4	177241370	+	VEGFC	chr4	177650900	-
intron-intron	ENST00000544392	ENST00000465812		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000544392	ENST00000409052		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000544392	ENST00000361779		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000544392	ENST00000259206		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000544392	ENST00000354115		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
intron-5UTR	ENST00000544392	ENST00000409930		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-intron	ENST00000369151	ENST00000465812		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000369151	ENST00000409052		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000369151	ENST00000361779		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000369151	ENST00000259206		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000369151	ENST00000354115		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000369151	ENST00000409930		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-intron	ENST00000340214	ENST00000465812		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000340214	ENST00000409052		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000340214	ENST00000361779		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000340214	ENST00000259206		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000340214	ENST00000354115		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
5CDS-5UTR	ENST00000340214	ENST00000409930		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CACUL1	chr10	120513908	-	IL1RN	chr2	113885266	+
Frame-shit	ENST00000394524	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000394524	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000394524	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000454265	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000454265	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000454265	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000394526	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000394526	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000394526	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000429180	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000429180	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000429180	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000296402	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000296402	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000296402	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000418639	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000418639	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000418639	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000511664	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000511664	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000511664	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000342666	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000342666	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
In-frame	ENST00000342666	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000515496	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000515496	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000515496	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000514328	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000514328	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000514328	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000394522	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000394522	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000394522	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000505990	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000505990	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000505990	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000379773	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000379773	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000379773	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000508738	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000508738	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000508738	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
intron-3CDS	ENST00000509907	ENST00000554578		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
intron-3CDS	ENST00000509907	ENST00000332782		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
intron-3CDS	ENST00000509907	ENST00000546246		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	CAMK2D	chr4	114386685	-	STAC3	chr12	57638748	-
Frame-shit	ENST00000374980	ENST00000336915		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	EIF2S2	chr20	32691268	-	SKAP1	chr17	46266862	-
Frame-shit	ENST00000374980	ENST00000584924		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	EIF2S2	chr20	32691268	-	SKAP1	chr17	46266862	-
intron-intron	ENST00000393784	ENST00000474210		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000393784	ENST00000394231		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000393784	ENST00000577810		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000519860	ENST00000474210		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000519860	ENST00000394231		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000519860	ENST00000577810		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000523291	ENST00000474210		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000523291	ENST00000394231		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000523291	ENST00000577810		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000326654	ENST00000474210		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000326654	ENST00000394231		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-intron	ENST00000326654	ENST00000577810		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ERGIC1	chr5	172339959	+	MIEN1	chr17	37886485	-
intron-3CDS	ENST00000371946	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371946	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000371946	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371945	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371945	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000371945	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000341183	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000341183	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000341183	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000428112	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000428112	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000428112	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-3CDS	ENST00000545730	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-3CDS	ENST00000545730	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-intron	ENST00000545730	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000465783	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000465783	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000465783	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000525888	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000525888	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000525888	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371944	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371944	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000371944	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MKNK1	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-3CDS	ENST00000319928	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-3CDS	ENST00000319928	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-intron	ENST00000319928	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000271139	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000271139	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000271139	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371940	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-3CDS	ENST00000371940	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
intron-intron	ENST00000371940	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-3CDS	ENST00000477318	ENST00000544071		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-3CDS	ENST00000477318	ENST00000371933		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
5UTR-intron	ENST00000477318	ENST00000484461		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	MOB3C	chr1	47082383	-	EFCAB14	chr1	47182115	-
3UTR-intron	ENST00000394670	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394670	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000321233	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000394673	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000341711	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
3UTR-intron	ENST00000342555	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000577908	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000333942		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000358365		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000583994		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000545287		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000354266		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000394692		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000581094		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000580976		TCGA	LD	UCEC	TCGA-KP-A3W4-01A	ZNF207	chr17	30696801	+	RHOT1	chr17	30580104	+
5CDS-5UTR	ENST00000452510	ENST00000323760		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000452510	ENST00000357274		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000452510	ENST00000348983		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000452510	ENST00000356505		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000452510	ENST00000415130		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000452510	ENST00000513970		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-intron	ENST00000452510	ENST00000514555		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000354283	ENST00000323760		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000354283	ENST00000357274		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000354283	ENST00000348983		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000354283	ENST00000356505		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000354283	ENST00000415130		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-5UTR	ENST00000354283	ENST00000513970		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
5CDS-intron	ENST00000354283	ENST00000514555		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-5UTR	ENST00000509178	ENST00000323760		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-5UTR	ENST00000509178	ENST00000357274		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-5UTR	ENST00000509178	ENST00000348983		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-5UTR	ENST00000509178	ENST00000356505		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-5UTR	ENST00000509178	ENST00000415130		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-5UTR	ENST00000509178	ENST00000513970		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-intron	ENST00000509178	ENST00000514555		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	DDX46	chr5	134094645	+	CDC25C	chr5	137666903	-
intron-3CDS	ENST00000437809	ENST00000368323		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000437809	ENST00000539040		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000437809	ENST00000368322		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000368331	ENST00000368323		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000368331	ENST00000539040		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000368331	ENST00000368322		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000271883	ENST00000368323		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000271883	ENST00000539040		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000271883	ENST00000368322		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000361040	ENST00000368323		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000361040	ENST00000539040		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
intron-3CDS	ENST00000361040	ENST00000368322		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000471341	ENST00000368323		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000471341	ENST00000539040		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
5UTR-3CDS	ENST00000471341	ENST00000368322		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	GON4L	chr1	155826938	-	RIT1	chr1	155874595	-
Frame-shit	ENST00000296484	ENST00000305533		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52266133	-
Frame-shit	ENST00000296484	ENST00000499914		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52266133	-
Frame-shit	ENST00000394970	ENST00000305533		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52266133	-
Frame-shit	ENST00000394970	ENST00000499914		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52266133	-
In-frame	ENST00000474012	ENST00000305533		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52266133	-
In-frame	ENST00000474012	ENST00000499914		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	POC1A	chr3	52172185	-	TWF2	chr3	52266133	-
intron-3CDS	ENST00000445403	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000445403	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000445403	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000445403	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000445403	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000445403	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
5UTR-3CDS	ENST00000373578	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
5UTR-3CDS	ENST00000373578	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
5UTR-3UTR	ENST00000373578	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
5UTR-3UTR	ENST00000373578	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
5UTR-3UTR	ENST00000373578	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
5UTR-3UTR	ENST00000373578	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000360723	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000360723	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000360723	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000360723	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000360723	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000360723	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000358208	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000358208	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000358208	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000358208	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000358208	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000358208	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000373567	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000373567	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373567	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373567	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373567	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373567	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000373558	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000373558	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373558	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373558	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373558	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000373558	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000477066	ENST00000373606		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3CDS	ENST00000477066	ENST00000397156		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000477066	ENST00000397150		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000477066	ENST00000397152		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000477066	ENST00000373605		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
intron-3UTR	ENST00000477066	ENST00000397151		TCGA	LD	UCEC	TCGA-PG-A5BC-01A	SRC	chr20	35993680	+	MANBAL	chr20	35944711	+
Frame-shit	ENST00000294016	ENST00000576634		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
Frame-shit	ENST00000294016	ENST00000341633		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
Frame-shit	ENST00000294016	ENST00000417763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
Frame-shit	ENST00000294016	ENST00000571025		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
Frame-shit	ENST00000294016	ENST00000572600		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
5CDS-intron	ENST00000294016	ENST00000445795		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
intron-3CDS	ENST00000571889	ENST00000576634		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
intron-3CDS	ENST00000571889	ENST00000341633		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
intron-3CDS	ENST00000571889	ENST00000417763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
intron-3CDS	ENST00000571889	ENST00000571025		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
intron-3CDS	ENST00000571889	ENST00000572600		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
intron-intron	ENST00000571889	ENST00000445795		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ADCY9	chr16	4163751	-	CLUAP1	chr16	3569903	+
In-frame	ENST00000591090	ENST00000210060		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
In-frame	ENST00000591090	ENST00000351660		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
In-frame	ENST00000591090	ENST00000594424		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
5CDS-5UTR	ENST00000591090	ENST00000599481		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
In-frame	ENST00000357332	ENST00000210060		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
In-frame	ENST00000357332	ENST00000351660		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
In-frame	ENST00000357332	ENST00000594424		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
5CDS-5UTR	ENST00000357332	ENST00000599481		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	ASNA1	chr19	12849472	+	DHPS	chr19	12791139	-
Frame-shit	ENST00000589222	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000589222	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000589222	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000589222	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000589222	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000589222	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000407086	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000407086	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000407086	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000407086	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000407086	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000407086	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000390652	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000390652	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000390652	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000390652	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000390652	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000390652	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000408905	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000408905	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000408905	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000408905	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000408905	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000408905	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588462	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588462	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588462	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588462	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588462	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000588462	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000585744	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000585744	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000585744	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000585744	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000585744	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000585744	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588874	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588874	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588874	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588874	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
Frame-shit	ENST00000588874	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5CDS-intron	ENST00000588874	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000262291		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000537567		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000539763		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000536180		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
intron-3CDS	ENST00000585812	ENST00000545362		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
intron-intron	ENST00000585812	ENST00000588617		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	BCAS3	chr17	59118253	+	VMP1	chr17	57895073	+
5UTR-3CDS	ENST00000375712	ENST00000201979		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	KIF3B	chr20	30865568	+	REM1	chr20	30070090	+
intron-3CDS	ENST00000418717	ENST00000201979		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	KIF3B	chr20	30865568	+	REM1	chr20	30070090	+
Frame-shit	ENST00000397493	ENST00000318003		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
Frame-shit	ENST00000397493	ENST00000589606		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
Frame-shit	ENST00000327423	ENST00000318003		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
Frame-shit	ENST00000327423	ENST00000589606		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
In-frame	ENST00000434485	ENST00000318003		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
In-frame	ENST00000434485	ENST00000589606		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
intron-3CDS	ENST00000461722	ENST00000318003		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
intron-3CDS	ENST00000461722	ENST00000589606		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	PRR14L	chr22	32134373	-	CC2D1A	chr19	14034146	+
5CDS-intron	ENST00000381750	ENST00000510407		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381750	ENST00000381641		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381730	ENST00000510407		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381730	ENST00000381641		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381728	ENST00000510407		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000381728	ENST00000381641		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000448872	ENST00000510407		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
5CDS-intron	ENST00000448872	ENST00000381641		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
intron-intron	ENST00000381732	ENST00000510407		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
intron-intron	ENST00000381732	ENST00000381641		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
intron-intron	ENST00000445485	ENST00000510407		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
intron-intron	ENST00000445485	ENST00000381641		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	RCL1	chr9	4849550	+	INSL6	chr9	5164265	-
Frame-shit	ENST00000256637	ENST00000271308		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
Frame-shit	ENST00000256637	ENST00000538610		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
5CDS-5UTR	ENST00000256637	ENST00000490870		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
Frame-shit	ENST00000538502	ENST00000271308		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
Frame-shit	ENST00000538502	ENST00000538610		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
5CDS-5UTR	ENST00000538502	ENST00000490870		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
5UTR-3CDS	ENST00000482236	ENST00000271308		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
5UTR-3CDS	ENST00000482236	ENST00000538610		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
5UTR-5UTR	ENST00000482236	ENST00000490870		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	SORT1	chr1	109910030	-	PSMA5	chr1	109944712	-
5UTR-intron	ENST00000340513	ENST00000264674		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000392736		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000464456		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000472280		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000494292		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000468789		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000460814		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000340513	ENST00000433243		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-5UTR	ENST00000340513	ENST00000485957		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000264674		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000392736		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000464456		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000472280		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000494292		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000468789		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000460814		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-intron	ENST00000300403	ENST00000433243		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
5UTR-5UTR	ENST00000300403	ENST00000485957		TCGA	LD	UCEC	TCGA-PG-A7D5-01A	TPX2	chr20	30330450	+	MECOM	chr3	168867543	-
In-frame	ENST00000296657	ENST00000292599		TCGA	LD	UCEC	TCGA-PG-A914-01A	ANKRD33B	chr5	10564945	+	MAML1	chr5	179192327	+
5CDS-3UTR	ENST00000296657	ENST00000503050		TCGA	LD	UCEC	TCGA-PG-A914-01A	ANKRD33B	chr5	10564945	+	MAML1	chr5	179192327	+
5CDS-intron	ENST00000405837	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000405837	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000433053	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000278893	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000360796	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000403550	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000407022	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5CDS-intron	ENST00000421906	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000298858		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000520328		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000256324		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000521077		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000518665		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000518868		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000519019		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000523816		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000525393		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000428926		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000522322		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000523771		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000412671		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000517877		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
5UTR-intron	ENST00000537604	ENST00000523576		TCGA	LD	UCEC	TCGA-PG-A914-01A	BSCL2	chr11	62469940	-	C14orf159	chr14	91662719	+
Frame-shit	ENST00000199389	ENST00000547776		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000199389	ENST00000329257		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000199389	ENST00000547010		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000341752		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000549558		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000550693		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000549025		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000549493		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000547446		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000333732		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000546568		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000332712		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000199389	ENST00000546960		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-5UTR	ENST00000199389	ENST00000550833		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000536084	ENST00000547776		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000536084	ENST00000329257		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
Frame-shit	ENST00000536084	ENST00000547010		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000341752		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000549558		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000550693		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000549025		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000549493		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000547446		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000333732		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000546568		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000332712		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-intron	ENST00000536084	ENST00000546960		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-5UTR	ENST00000536084	ENST00000550833		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-3CDS	ENST00000495565	ENST00000547776		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-3CDS	ENST00000495565	ENST00000329257		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-3CDS	ENST00000495565	ENST00000547010		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000341752		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000549558		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000550693		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000549025		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000549493		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000547446		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000333732		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000546568		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000332712		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-intron	ENST00000495565	ENST00000546960		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
intron-5UTR	ENST00000495565	ENST00000550833		TCGA	LD	UCEC	TCGA-PG-A914-01A	EIF2AK1	chr7	6077055	-	ANKS1B	chr12	99640642	-
5CDS-3UTR	ENST00000375771	ENST00000375980		TCGA	LD	UCEC	TCGA-PG-A914-01A	FBLIM1	chr1	16103782	+	EFHD2	chr1	15756592	+
5CDS-3UTR	ENST00000375766	ENST00000375980		TCGA	LD	UCEC	TCGA-PG-A914-01A	FBLIM1	chr1	16103782	+	EFHD2	chr1	15756592	+
5CDS-3UTR	ENST00000400773	ENST00000375980		TCGA	LD	UCEC	TCGA-PG-A914-01A	FBLIM1	chr1	16103782	+	EFHD2	chr1	15756592	+
intron-3UTR	ENST00000441801	ENST00000375980		TCGA	LD	UCEC	TCGA-PG-A914-01A	FBLIM1	chr1	16103782	+	EFHD2	chr1	15756592	+
5CDS-3UTR	ENST00000332305	ENST00000375980		TCGA	LD	UCEC	TCGA-PG-A914-01A	FBLIM1	chr1	16103782	+	EFHD2	chr1	15756592	+
3UTR-3UTR	ENST00000509138	ENST00000375980		TCGA	LD	UCEC	TCGA-PG-A914-01A	FBLIM1	chr1	16103782	+	EFHD2	chr1	15756592	+
intron-3CDS	ENST00000476233	ENST00000345317		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
intron-5UTR	ENST00000476233	ENST00000539623		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
intron-intron	ENST00000476233	ENST00000489977		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
3UTR-3CDS	ENST00000354667	ENST00000345317		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
3UTR-5UTR	ENST00000354667	ENST00000539623		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
3UTR-intron	ENST00000354667	ENST00000489977		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
3UTR-3CDS	ENST00000356674	ENST00000345317		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
3UTR-5UTR	ENST00000356674	ENST00000539623		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
3UTR-intron	ENST00000356674	ENST00000489977		TCGA	LD	UCEC	TCGA-PG-A914-01A	HNRNPA2B1	chr7	26232115	-	SKAP2	chr7	26894509	-
5CDS-intron	ENST00000302787	ENST00000382882		TCGA	LD	UCEC	TCGA-PG-A914-01A	LETM1	chr4	1823908	-	NELFA	chr4	2025263	-
5CDS-intron	ENST00000302787	ENST00000411638		TCGA	LD	UCEC	TCGA-PG-A914-01A	LETM1	chr4	1823908	-	NELFA	chr4	2025263	-
5CDS-intron	ENST00000302787	ENST00000542778		TCGA	LD	UCEC	TCGA-PG-A914-01A	LETM1	chr4	1823908	-	NELFA	chr4	2025263	-
intron-intron	ENST00000512189	ENST00000382882		TCGA	LD	UCEC	TCGA-PG-A914-01A	LETM1	chr4	1823908	-	NELFA	chr4	2025263	-
intron-intron	ENST00000512189	ENST00000411638		TCGA	LD	UCEC	TCGA-PG-A914-01A	LETM1	chr4	1823908	-	NELFA	chr4	2025263	-
intron-intron	ENST00000512189	ENST00000542778		TCGA	LD	UCEC	TCGA-PG-A914-01A	LETM1	chr4	1823908	-	NELFA	chr4	2025263	-
5CDS-5UTR	ENST00000217246	ENST00000378053		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000217246	ENST00000341420		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-intron	ENST00000217246	ENST00000462077		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000310348	ENST00000378053		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000310348	ENST00000341420		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-intron	ENST00000310348	ENST00000462077		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
intron-5UTR	ENST00000464883	ENST00000378053		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
intron-5UTR	ENST00000464883	ENST00000341420		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
intron-intron	ENST00000464883	ENST00000462077		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000402914	ENST00000378053		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000402914	ENST00000341420		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-intron	ENST00000402914	ENST00000462077		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000378058	ENST00000378053		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-5UTR	ENST00000378058	ENST00000341420		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
5CDS-intron	ENST00000378058	ENST00000462077		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
intron-5UTR	ENST00000407045	ENST00000378053		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
intron-5UTR	ENST00000407045	ENST00000341420		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
intron-intron	ENST00000407045	ENST00000462077		TCGA	LD	UCEC	TCGA-PG-A914-01A	MACROD2	chr20	15913983	+	FLRT3	chr20	14308204	-
In-frame	ENST00000291442	ENST00000519716		TCGA	LD	UCEC	TCGA-PG-A914-01A	NR2F6	chr19	17346308	-	UNC13A	chr19	17769078	-
In-frame	ENST00000291442	ENST00000252773		TCGA	LD	UCEC	TCGA-PG-A914-01A	NR2F6	chr19	17346308	-	UNC13A	chr19	17769078	-
In-frame	ENST00000291442	ENST00000428389		TCGA	LD	UCEC	TCGA-PG-A914-01A	NR2F6	chr19	17346308	-	UNC13A	chr19	17769078	-
In-frame	ENST00000291442	ENST00000551649		TCGA	LD	UCEC	TCGA-PG-A914-01A	NR2F6	chr19	17346308	-	UNC13A	chr19	17769078	-
In-frame	ENST00000291442	ENST00000552293		TCGA	LD	UCEC	TCGA-PG-A914-01A	NR2F6	chr19	17346308	-	UNC13A	chr19	17769078	-
In-frame	ENST00000291442	ENST00000550896		TCGA	LD	UCEC	TCGA-PG-A914-01A	NR2F6	chr19	17346308	-	UNC13A	chr19	17769078	-
5UTR-3CDS	ENST00000351960	ENST00000215790		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000351960	ENST00000403477		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000351960	ENST00000403362		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-intron	ENST00000351960	ENST00000490449		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000358965	ENST00000215790		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000358965	ENST00000403477		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000358965	ENST00000403362		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-intron	ENST00000358965	ENST00000490449		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000393695	ENST00000215790		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000393695	ENST00000403477		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000393695	ENST00000403362		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-intron	ENST00000393695	ENST00000490449		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000543450	ENST00000215790		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000543450	ENST00000403477		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-3CDS	ENST00000543450	ENST00000403362		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
5UTR-intron	ENST00000543450	ENST00000490449		TCGA	LD	UCEC	TCGA-PG-A914-01A	NUMA1	chr11	71780888	-	TBC1D10A	chr22	30689794	-
In-frame	ENST00000403222	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000403222	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000403222	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-3UTR	ENST00000403222	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000403222	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
In-frame	ENST00000407373	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000407373	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000407373	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-3UTR	ENST00000407373	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000407373	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
In-frame	ENST00000332585	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000332585	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000332585	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-3UTR	ENST00000332585	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000332585	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
In-frame	ENST00000382310	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000382310	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000382310	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-3UTR	ENST00000382310	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000382310	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
In-frame	ENST00000446658	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000446658	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000446658	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-3UTR	ENST00000446658	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
5CDS-intron	ENST00000446658	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3CDS	ENST00000401475	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000401475	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000401475	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3UTR	ENST00000401475	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000401475	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3CDS	ENST00000437268	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000437268	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000437268	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3UTR	ENST00000437268	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000437268	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3CDS	ENST00000535268	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000535268	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000535268	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3UTR	ENST00000535268	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000535268	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3CDS	ENST00000496575	ENST00000431239		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000496575	ENST00000369259		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000496575	ENST00000369258		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3UTR	ENST00000496575	ENST00000467213		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-intron	ENST00000496575	ENST00000361293		TCGA	LD	UCEC	TCGA-PG-A914-01A	OSBP2	chr22	31137356	+	CHD1L	chr1	146724278	+
intron-3CDS	ENST00000446845	ENST00000452631		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000446845	ENST00000346219		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000446845	ENST00000308059		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-intron	ENST00000446845	ENST00000469151		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000311806	ENST00000452631		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000311806	ENST00000346219		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000311806	ENST00000308059		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-intron	ENST00000311806	ENST00000469151		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000492714	ENST00000452631		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000492714	ENST00000346219		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-3CDS	ENST00000492714	ENST00000308059		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
intron-intron	ENST00000492714	ENST00000469151		TCGA	LD	UCEC	TCGA-PG-A914-01A	OXSR1	chr3	38234909	+	DLEC1	chr3	38153168	+
5CDS-intron	ENST00000552276	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552276	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000435558	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000551178	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000547178	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000225328	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000345901	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5CDS-intron	ENST00000552050	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000446828		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000424227		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000443863		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000535426		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000265026		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000448876		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000454237		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
5UTR-intron	ENST00000550772	ENST00000438798		TCGA	LD	UCEC	TCGA-PG-A914-01A	P2RX5	chr17	3591306	-	MAP3K13	chr3	185046412	+
3UTR-3CDS	ENST00000472876	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
3UTR-3CDS	ENST00000472876	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
3UTR-3CDS	ENST00000472876	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
3UTR-3CDS	ENST00000472876	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
3UTR-intron	ENST00000472876	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395527	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395527	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395527	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395527	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000395527	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395529	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395529	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395529	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395529	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000395529	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000261503	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000261503	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000261503	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000261503	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000261503	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395530	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395530	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395530	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395530	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000395530	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000536879	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000536879	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000536879	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000536879	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000536879	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395522	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395522	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395522	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395522	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000395522	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395525	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395525	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395525	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000395525	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000395525	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
In-frame	ENST00000584527	ENST00000398174		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
In-frame	ENST00000584527	ENST00000340852		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
In-frame	ENST00000584527	ENST00000335574		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
In-frame	ENST00000584527	ENST00000376127		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
5CDS-intron	ENST00000584527	ENST00000492709		TCGA	LD	UCEC	TCGA-PG-A914-01A	SPECC1	chr17	20135718	+	HM13	chr20	30115287	+
Frame-shit	ENST00000291232	ENST00000361204		TCGA	LD	UCEC	TCGA-PG-A914-01A	TNFRSF13C	chr22	42322105	-	SREBF2	chr22	42289121	+
5CDS-3UTR	ENST00000291232	ENST00000491541		TCGA	LD	UCEC	TCGA-PG-A914-01A	TNFRSF13C	chr22	42322105	-	SREBF2	chr22	42289121	+
5CDS-5UTR	ENST00000437508	ENST00000485070		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
5CDS-5UTR	ENST00000437508	ENST00000469348		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
5CDS-intron	ENST00000437508	ENST00000315184		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
3UTR-5UTR	ENST00000494872	ENST00000485070		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
3UTR-5UTR	ENST00000494872	ENST00000469348		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
3UTR-intron	ENST00000494872	ENST00000315184		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
5CDS-5UTR	ENST00000338700	ENST00000485070		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
5CDS-5UTR	ENST00000338700	ENST00000469348		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
5CDS-intron	ENST00000338700	ENST00000315184		TCGA	LD	UCEC	TCGA-PG-A914-01A	TRIM2	chr4	154217188	+	FAM71F1	chr7	128349139	+
In-frame	ENST00000283713	ENST00000264741		TCGA	LD	UCEC	TCGA-PG-A914-01A	VILL	chr3	38035463	+	ITGA9	chr3	37818883	+
5CDS-intron	ENST00000283713	ENST00000422441		TCGA	LD	UCEC	TCGA-PG-A914-01A	VILL	chr3	38035463	+	ITGA9	chr3	37818883	+
In-frame	ENST00000383759	ENST00000264741		TCGA	LD	UCEC	TCGA-PG-A914-01A	VILL	chr3	38035463	+	ITGA9	chr3	37818883	+
5CDS-intron	ENST00000383759	ENST00000422441		TCGA	LD	UCEC	TCGA-PG-A914-01A	VILL	chr3	38035463	+	ITGA9	chr3	37818883	+
intron-3CDS	ENST00000465644	ENST00000264741		TCGA	LD	UCEC	TCGA-PG-A914-01A	VILL	chr3	38035463	+	ITGA9	chr3	37818883	+
intron-intron	ENST00000465644	ENST00000422441		TCGA	LD	UCEC	TCGA-PG-A914-01A	VILL	chr3	38035463	+	ITGA9	chr3	37818883	+
intron-intron	ENST00000253048	ENST00000495988		TCGA	LD	UCEC	TCGA-PG-A914-01A	ZC3H4	chr19	47614152	-	APOBEC3A	chr22	39353593	+
intron-5UTR	ENST00000253048	ENST00000402255		TCGA	LD	UCEC	TCGA-PG-A914-01A	ZC3H4	chr19	47614152	-	APOBEC3A	chr22	39353593	+
intron-5UTR	ENST00000253048	ENST00000249116		TCGA	LD	UCEC	TCGA-PG-A914-01A	ZC3H4	chr19	47614152	-	APOBEC3A	chr22	39353593	+
intron-intron	ENST00000594019	ENST00000495988		TCGA	LD	UCEC	TCGA-PG-A914-01A	ZC3H4	chr19	47614152	-	APOBEC3A	chr22	39353593	+
intron-5UTR	ENST00000594019	ENST00000402255		TCGA	LD	UCEC	TCGA-PG-A914-01A	ZC3H4	chr19	47614152	-	APOBEC3A	chr22	39353593	+
intron-5UTR	ENST00000594019	ENST00000249116		TCGA	LD	UCEC	TCGA-PG-A914-01A	ZC3H4	chr19	47614152	-	APOBEC3A	chr22	39353593	+
In-frame	ENST00000318003	ENST00000319545		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14023406	+	MRI1	chr19	13882935	+
In-frame	ENST00000318003	ENST00000040663		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14023406	+	MRI1	chr19	13882935	+
In-frame	ENST00000589606	ENST00000319545		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14023406	+	MRI1	chr19	13882935	+
In-frame	ENST00000589606	ENST00000040663		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14023406	+	MRI1	chr19	13882935	+
5CDS-5UTR	ENST00000318003	ENST00000227495		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000318003	ENST00000444328		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000318003	ENST00000356132		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000318003	ENST00000530591		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000318003	ENST00000534083		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000318003	ENST00000392669		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-3UTR	ENST00000318003	ENST00000526756		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000318003	ENST00000526727		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000318003	ENST00000449406		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000318003	ENST00000532243		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000318003	ENST00000534457		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000227495		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000444328		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000356132		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000530591		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000534083		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000392669		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-3UTR	ENST00000589606	ENST00000526756		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-5UTR	ENST00000589606	ENST00000526727		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000589606	ENST00000449406		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000589606	ENST00000532243		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-intron	ENST00000589606	ENST00000534457		TCGA	LD	UCEC	TCGA-PG-A915-01A	CC2D1A	chr19	14040473	+	ST3GAL4	chr11	126275991	+
5CDS-3UTR	ENST00000392693	ENST00000347330		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000413209		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000338641		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000392693	ENST00000403435		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000361452		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000392693	ENST00000403999		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000392693	ENST00000334961		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000353887		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000361166		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000397789		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000392693	ENST00000361676		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000347330		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000413209		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000338641		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000531738	ENST00000403435		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000361452		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000531738	ENST00000403999		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000531738	ENST00000334961		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000353887		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000361166		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000397789		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000531738	ENST00000361676		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000347330		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000413209		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000338641		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000263577	ENST00000403435		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000361452		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000263577	ENST00000403999		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-intron	ENST00000263577	ENST00000334961		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000353887		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000361166		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000397789		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
5CDS-3UTR	ENST00000263577	ENST00000361676		TCGA	LD	UCEC	TCGA-PG-A915-01A	CDON	chr11	125848199	-	NF2	chr22	30090741	+
Frame-shit	ENST00000398344	ENST00000335542		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
Frame-shit	ENST00000398344	ENST00000430179		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000422159		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000450603		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000449554		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000446937		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000457360		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000437422		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000439975		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000287656		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000449238		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000398344	ENST00000429122		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-5UTR	ENST00000398344	ENST00000476283		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
In-frame	ENST00000350608	ENST00000335542		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
In-frame	ENST00000350608	ENST00000430179		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000422159		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000450603		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000449554		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000446937		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000457360		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000437422		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000439975		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000287656		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000449238		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000350608	ENST00000429122		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-5UTR	ENST00000350608	ENST00000476283		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
In-frame	ENST00000404092	ENST00000335542		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
In-frame	ENST00000404092	ENST00000430179		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000422159		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000450603		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000449554		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000446937		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000457360		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000437422		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000439975		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000287656		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000449238		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000404092	ENST00000429122		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-5UTR	ENST00000404092	ENST00000476283		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
Frame-shit	ENST00000403754	ENST00000335542		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
Frame-shit	ENST00000403754	ENST00000430179		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000422159		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000450603		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000449554		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000446937		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000457360		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000437422		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000439975		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000287656		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000449238		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000403754	ENST00000429122		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-5UTR	ENST00000403754	ENST00000476283		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
Frame-shit	ENST00000430101	ENST00000335542		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
Frame-shit	ENST00000430101	ENST00000430179		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000422159		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000450603		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000449554		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000446937		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000457360		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000437422		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000439975		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000287656		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000449238		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-intron	ENST00000430101	ENST00000429122		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
5CDS-5UTR	ENST00000430101	ENST00000476283		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	GHRL	chr3	10328496	-
Frame-shit	ENST00000215770	ENST00000335542		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
Frame-shit	ENST00000215770	ENST00000430179		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000422159		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000450603		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000449554		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000446937		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000457360		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000437422		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000439975		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000287656		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000449238		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-intron	ENST00000215770	ENST00000429122		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
5CDS-5UTR	ENST00000215770	ENST00000476283		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	GHRL	chr3	10328496	-
Frame-shit	ENST00000215770	ENST00000397109		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	SEC13	chr3	10343058	-
In-frame	ENST00000215770	ENST00000337354		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	SEC13	chr3	10343058	-
In-frame	ENST00000215770	ENST00000350697		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	SEC13	chr3	10343058	-
5CDS-intron	ENST00000215770	ENST00000397117		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	SEC13	chr3	10343058	-
5CDS-intron	ENST00000215770	ENST00000383801		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	SEC13	chr3	10343058	-
5CDS-intron	ENST00000215770	ENST00000492602		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDTL	chr22	24309749	+	SEC13	chr3	10343058	-
Frame-shit	ENST00000398344	ENST00000397109		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
In-frame	ENST00000398344	ENST00000337354		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
In-frame	ENST00000398344	ENST00000350697		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000398344	ENST00000397117		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000398344	ENST00000383801		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000398344	ENST00000492602		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000350608	ENST00000397109		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000350608	ENST00000337354		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000350608	ENST00000350697		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000350608	ENST00000397117		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000350608	ENST00000383801		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000350608	ENST00000492602		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000404092	ENST00000397109		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000404092	ENST00000337354		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000404092	ENST00000350697		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000404092	ENST00000397117		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000404092	ENST00000383801		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000404092	ENST00000492602		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000403754	ENST00000397109		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
In-frame	ENST00000403754	ENST00000337354		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
In-frame	ENST00000403754	ENST00000350697		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000403754	ENST00000397117		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000403754	ENST00000383801		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000403754	ENST00000492602		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
Frame-shit	ENST00000430101	ENST00000397109		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
In-frame	ENST00000430101	ENST00000337354		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
In-frame	ENST00000430101	ENST00000350697		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000430101	ENST00000397117		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000430101	ENST00000383801		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-intron	ENST00000430101	ENST00000492602		TCGA	LD	UCEC	TCGA-PG-A915-01A	DDT	chr22	24315957	-	SEC13	chr3	10343058	-
5CDS-5UTR	ENST00000274813	ENST00000586600		TCGA	LD	UCEC	TCGA-PG-A915-01A	MUT	chr6	49407919	-	CCDC130	chr19	13862422	+
5CDS-5UTR	ENST00000274813	ENST00000221554		TCGA	LD	UCEC	TCGA-PG-A915-01A	MUT	chr6	49407919	-	CCDC130	chr19	13862422	+
5CDS-intron	ENST00000274813	ENST00000587019		TCGA	LD	UCEC	TCGA-PG-A915-01A	MUT	chr6	49407919	-	CCDC130	chr19	13862422	+
5CDS-intron	ENST00000599117	ENST00000586783		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000599117	ENST00000454313		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000599117	ENST00000346736		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000599117	ENST00000591586		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-intron	ENST00000432763	ENST00000586783		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000432763	ENST00000454313		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000432763	ENST00000346736		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000432763	ENST00000591586		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-intron	ENST00000402194	ENST00000586783		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000402194	ENST00000454313		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000402194	ENST00000346736		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000402194	ENST00000591586		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-intron	ENST00000359191	ENST00000586783		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000359191	ENST00000454313		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000359191	ENST00000346736		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000359191	ENST00000591586		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-intron	ENST00000598725	ENST00000586783		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000598725	ENST00000454313		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000598725	ENST00000346736		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
5CDS-5UTR	ENST00000598725	ENST00000591586		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	C19orf57	chr19	14015726	-
Frame-shit	ENST00000599117	ENST00000315588		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000599117	ENST00000594368		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000599117	ENST00000599213		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
Frame-shit	ENST00000432763	ENST00000315588		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000432763	ENST00000594368		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000432763	ENST00000599213		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
Frame-shit	ENST00000402194	ENST00000315588		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000402194	ENST00000594368		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000402194	ENST00000599213		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
Frame-shit	ENST00000359191	ENST00000315588		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000359191	ENST00000594368		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000359191	ENST00000599213		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
Frame-shit	ENST00000598725	ENST00000315588		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000598725	ENST00000594368		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
5CDS-intron	ENST00000598725	ENST00000599213		TCGA	LD	UCEC	TCGA-PG-A915-01A	SUPT5H	chr19	39936605	+	MED29	chr19	39888097	+
intron-3UTR	ENST00000598155	ENST00000492220		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000598155	ENST00000401000		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000598155	ENST00000539519		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000598155	ENST00000369067		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
intron-3UTR	ENST00000598155	ENST00000369068		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000245934	ENST00000492220		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000245934	ENST00000401000		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000245934	ENST00000539519		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000245934	ENST00000369067		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
5UTR-3UTR	ENST00000245934	ENST00000369068		TCGA	LD	UCEC	TCGA-PG-A915-01A	SYMPK	chr19	46366316	-	RPRD2	chr1	150390072	+
5CDS-3UTR	ENST00000215790	ENST00000393655		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-3UTR	ENST00000215790	ENST00000263046		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-intron	ENST00000215790	ENST00000489228		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-3UTR	ENST00000403477	ENST00000393655		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-3UTR	ENST00000403477	ENST00000263046		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-intron	ENST00000403477	ENST00000489228		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-3UTR	ENST00000403362	ENST00000393655		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-3UTR	ENST00000403362	ENST00000263046		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5CDS-intron	ENST00000403362	ENST00000489228		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5UTR-3UTR	ENST00000490449	ENST00000393655		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5UTR-3UTR	ENST00000490449	ENST00000263046		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
5UTR-intron	ENST00000490449	ENST00000489228		TCGA	LD	UCEC	TCGA-PG-A915-01A	TBC1D10A	chr22	30700520	-	TFAP2B	chr6	50813414	+
Frame-shit	ENST00000360605	ENST00000302177		TCGA	LD	UCEC	TCGA-PG-A915-01A	URI1	chr19	30477324	+	FOXA3	chr19	46375333	+
Frame-shit	ENST00000542441	ENST00000302177		TCGA	LD	UCEC	TCGA-PG-A915-01A	URI1	chr19	30477324	+	FOXA3	chr19	46375333	+
Frame-shit	ENST00000392271	ENST00000302177		TCGA	LD	UCEC	TCGA-PG-A915-01A	URI1	chr19	30477324	+	FOXA3	chr19	46375333	+
Frame-shit	ENST00000312051	ENST00000302177		TCGA	LD	UCEC	TCGA-PG-A915-01A	URI1	chr19	30477324	+	FOXA3	chr19	46375333	+
intron-3CDS	ENST00000574176	ENST00000302177		TCGA	LD	UCEC	TCGA-PG-A915-01A	URI1	chr19	30477324	+	FOXA3	chr19	46375333	+
intron-3CDS	ENST00000363315	ENST00000497547		TCGA	LD	UCEC	TCGA-QF-A5YT-01A	SNHG16	chr17	74553939	+	RRP1	chr21	45222155	+
intron-3UTR	ENST00000363315	ENST00000471909		TCGA	LD	UCEC	TCGA-QF-A5YT-01A	SNHG16	chr17	74553939	+	RRP1	chr21	45222155	+
intron-3CDS	ENST00000364968	ENST00000497547		TCGA	LD	UCEC	TCGA-QF-A5YT-01A	SNHG16	chr17	74553939	+	RRP1	chr21	45222155	+
intron-3UTR	ENST00000364968	ENST00000471909		TCGA	LD	UCEC	TCGA-QF-A5YT-01A	SNHG16	chr17	74553939	+	RRP1	chr21	45222155	+
intron-3CDS	ENST00000402590	ENST00000303227		TCGA	LD	UCEC	TCGA-QS-A8F1-01A	GAGE2E	chrX	49221386	+	GLOD5	chrX	48631726	+
intron-3UTR	ENST00000402590	ENST00000470676		TCGA	LD	UCEC	TCGA-QS-A8F1-01A	GAGE2E	chrX	49221386	+	GLOD5	chrX	48631726	+
Frame-shit	ENST00000425042	ENST00000476258		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
In-frame	ENST00000425042	ENST00000405458		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
Frame-shit	ENST00000425042	ENST00000409753		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
In-frame	ENST00000425042	ENST00000482348		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
In-frame	ENST00000425042	ENST00000356033		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
In-frame	ENST00000425042	ENST00000470924		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
Frame-shit	ENST00000425042	ENST00000481647		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
Frame-shit	ENST00000425042	ENST00000392566		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
5CDS-3UTR	ENST00000425042	ENST00000581874		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
5CDS-intron	ENST00000425042	ENST00000465454		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000476258		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000405458		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000409753		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000482348		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000356033		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000470924		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000481647		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3CDS	ENST00000532900	ENST00000392566		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-3UTR	ENST00000532900	ENST00000581874		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
intron-intron	ENST00000532900	ENST00000465454		TCGA	LD	UCEC	TCGA-SL-A6J9-01A	HID1	chr17	72954236	-	HN1	chr17	73132345	-
5UTR-3CDS	ENST00000343455	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3CDS	ENST00000343455	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3CDS	ENST00000343455	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3CDS	ENST00000343455	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3CDS	ENST00000343455	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3CDS	ENST00000343455	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3CDS	ENST00000343455	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
5UTR-3UTR	ENST00000343455	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000526495	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3UTR	ENST00000526495	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000393063	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3UTR	ENST00000393063	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527416	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3UTR	ENST00000527416	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000527414	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3UTR	ENST00000527414	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000556045	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3UTR	ENST00000556045	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000256216		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000515320		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000510025		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000504811		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000414835		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000513628		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3CDS	ENST00000541352	ENST00000509514		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
intron-3UTR	ENST00000541352	ENST00000522415		TCGA	LD	UCEC	TCGA-SL-A6JA-01A	DICER1	chr14	95623567	-	HSD17B4	chr5	118872118	+
In-frame	ENST00000349830	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000349830	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000349830	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000349830	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000349830	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000349830	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000349830	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000520359	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000398560	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000518288	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000398564	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
In-frame	ENST00000262112	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000522455		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000521695		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000521268		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000518566		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000517638		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000523850		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
intron-3CDS	ENST00000521927	ENST00000521376		TCGA	RV	UCS	TCGA-N5-A59E-01A	ARHGEF10	chr8	1857636	+	RALYL	chr8	85686814	+
Frame-shit	ENST00000358791	ENST00000371621		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
5CDS-5UTR	ENST00000358791	ENST00000541713		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
Frame-shit	ENST00000262591	ENST00000371621		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
5CDS-5UTR	ENST00000262591	ENST00000541713		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
Frame-shit	ENST00000371608	ENST00000371621		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
5CDS-5UTR	ENST00000371608	ENST00000541713		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
Frame-shit	ENST00000609336	ENST00000371621		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
5CDS-5UTR	ENST00000609336	ENST00000541713		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
3UTR-3CDS	ENST00000485049	ENST00000371621		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
3UTR-5UTR	ENST00000485049	ENST00000541713		TCGA	RV	UCS	TCGA-N8-A4PL-01A	BCAS4	chr20	49434819	+	PTPN1	chr20	49181506	+
In-frame	ENST00000375885	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375885	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375885	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375885	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375885	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
In-frame	ENST00000375882	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375882	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375882	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375882	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375882	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
In-frame	ENST00000375865	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375865	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375865	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375865	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375865	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
In-frame	ENST00000375866	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375866	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375866	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375866	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000375866	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000439572	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439572	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439572	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439572	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000439572	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000452985	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000452985	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000452985	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000452985	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000452985	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000488020	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000488020	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000488020	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000488020	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000488020	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000413083	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000413083	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000413083	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000413083	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000413083	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000418230	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000418230	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000418230	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000418230	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000418230	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000458330	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000458330	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000458330	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000458330	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000458330	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000424502	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424502	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424502	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424502	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000424502	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000443673	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000443673	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000443673	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000443673	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000443673	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000485003	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000485003	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000485003	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000485003	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000485003	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000429633	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000429633	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000429633	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000429633	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000429633	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000455161	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455161	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455161	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455161	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000455161	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000422261	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422261	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422261	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422261	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422261	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000422567	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422567	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422567	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422567	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000422567	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000480866	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000480866	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000480866	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000480866	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000480866	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000416194	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000416194	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000416194	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000416194	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000416194	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000431476	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000431476	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000431476	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000431476	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000431476	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000436169	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436169	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436169	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436169	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000436169	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000400116	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400116	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400116	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400116	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400116	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000383433	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383433	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383433	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383433	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383433	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000464220	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000464220	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000464220	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000464220	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000464220	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000383431	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383431	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383431	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383431	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383431	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000383427	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383427	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383427	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383427	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000383427	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000400110	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400110	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400110	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400110	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000400110	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000428483	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000428483	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000428483	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000428483	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000428483	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000454382	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454382	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454382	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454382	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454382	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000468132	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000468132	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000468132	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000468132	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000468132	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000454511	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454511	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454511	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454511	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000454511	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000448596	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000448596	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000448596	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000448596	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000448596	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000432290	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000432290	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000432290	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000432290	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000432290	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000451917	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000451917	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000451917	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000451917	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000451917	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000476022	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000476022	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000476022	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000476022	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000476022	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000437010	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000437010	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000437010	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000437010	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000437010	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000412802	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000412802	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000412802	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000412802	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000412802	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000453234	ENST00000280326		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000453234	ENST00000503026		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000453234	ENST00000515390		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000453234	ENST00000515676		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
intron-intron	ENST00000453234	ENST00000506600		TCGA	RV	UCS	TCGA-ND-A4W6-01A	CSNK2B	chr6	31637847	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000391945	ENST00000598205		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391945	ENST00000376970		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391945	ENST00000425460		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391945	ENST00000440075		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391945	ENST00000601313		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391945	ENST00000262269		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391945	ENST00000596571		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000598205		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000376970		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000425460		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000440075		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000601313		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000262269		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391944	ENST00000596571		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000598205		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000376970		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000425460		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000440075		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000601313		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000262269		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000485403	ENST00000596571		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000598205		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000376970		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000425460		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000440075		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000601313		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000262269		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000391940	ENST00000596571		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000598205		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000376970		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000425460		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000440075		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000601313		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000262269		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
intron-3CDS	ENST00000221481	ENST00000596571		TCGA	RV	UCS	TCGA-N5-A4RV-01A	ERCC2	chr19	45864782	-	MYH14	chr19	50810306	+
Frame-shit	ENST00000379312	ENST00000336517		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000379312	ENST00000394857		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000379312	ENST00000416245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
5CDS-intron	ENST00000379312	ENST00000467555		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
intron-3CDS	ENST00000566522	ENST00000336517		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
intron-3CDS	ENST00000566522	ENST00000394857		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
intron-3CDS	ENST00000566522	ENST00000416245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
intron-intron	ENST00000566522	ENST00000467555		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000042381	ENST00000336517		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000042381	ENST00000394857		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000042381	ENST00000416245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
5CDS-intron	ENST00000042381	ENST00000467555		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000540839	ENST00000336517		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000540839	ENST00000394857		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000540839	ENST00000416245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
5CDS-intron	ENST00000540839	ENST00000467555		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000422602	ENST00000336517		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000422602	ENST00000394857		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000422602	ENST00000416245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
5CDS-intron	ENST00000422602	ENST00000467555		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000428437	ENST00000336517		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000428437	ENST00000394857		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
Frame-shit	ENST00000428437	ENST00000416245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
5CDS-intron	ENST00000428437	ENST00000467555		TCGA	RV	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67577372	+	ZP3	chr7	76062787	+
5CDS-5UTR	ENST00000375592	ENST00000466212		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
5CDS-intron	ENST00000375592	ENST00000335496		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
5CDS-5UTR	ENST00000375592	ENST00000540400		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
5CDS-5UTR	ENST00000375592	ENST00000375577		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
intron-5UTR	ENST00000478089	ENST00000466212		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
intron-intron	ENST00000478089	ENST00000335496		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
intron-5UTR	ENST00000478089	ENST00000540400		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
intron-5UTR	ENST00000478089	ENST00000375577		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FBXO42	chr1	16621278	-	SPATA21	chr1	16752226	-
Frame-shit	ENST00000372572	ENST00000372565		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-5UTR	ENST00000372572	ENST00000433602		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-intron	ENST00000372572	ENST00000475426		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
Frame-shit	ENST00000372573	ENST00000372565		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-5UTR	ENST00000372573	ENST00000433602		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-intron	ENST00000372573	ENST00000475426		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
Frame-shit	ENST00000361346	ENST00000372565		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-5UTR	ENST00000361346	ENST00000433602		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-intron	ENST00000361346	ENST00000475426		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
Frame-shit	ENST00000361776	ENST00000372565		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-5UTR	ENST00000361776	ENST00000433602		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-intron	ENST00000361776	ENST00000475426		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
Frame-shit	ENST00000545068	ENST00000372565		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-5UTR	ENST00000545068	ENST00000433602		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-intron	ENST00000545068	ENST00000475426		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
intron-3CDS	ENST00000372571	ENST00000372565		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
intron-5UTR	ENST00000372571	ENST00000433602		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
intron-intron	ENST00000372571	ENST00000475426		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	FOXJ3	chr1	42776721	-	ZMYND12	chr1	42915730	-
5CDS-5UTR	ENST00000429644	ENST00000392149		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000429644	ENST00000316950		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000429644	ENST00000392150		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000429644	ENST00000592490		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000429644	ENST00000589833		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000429644	ENST00000591073		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000489715	ENST00000392149		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000489715	ENST00000316950		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000489715	ENST00000392150		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000489715	ENST00000592490		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000489715	ENST00000589833		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
5CDS-5UTR	ENST00000489715	ENST00000591073		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-5UTR	ENST00000477426	ENST00000392149		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-5UTR	ENST00000477426	ENST00000316950		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-5UTR	ENST00000477426	ENST00000392150		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-5UTR	ENST00000477426	ENST00000592490		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-5UTR	ENST00000477426	ENST00000589833		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-5UTR	ENST00000477426	ENST00000591073		TCGA	RV	UCS	TCGA-N5-A4RO-01A	GBE1	chr3	81754595	-	ZNF569	chr19	37935866	-
intron-3CDS	ENST00000373566	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373566	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373566	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373566	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373563	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373563	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373563	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000373563	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409480	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409480	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409480	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409480	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409547	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409547	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409547	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409547	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409196	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409196	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409196	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409196	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409451	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409451	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409451	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000409451	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
3UTR-3CDS	ENST00000482666	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000409613		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000264059		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000409708		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
intron-3CDS	ENST00000452341	ENST00000410095		TCGA	RV	UCS	TCGA-N8-A56S-01A	GIGYF2	chr2	233589401	+	EFHD1	chr2	233546295	+
Frame-shit	ENST00000406451	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000406451	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000406451	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000406451	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000401921	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000401921	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000401921	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000401921	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000432645	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000432645	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000432645	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000432645	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000441542	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000441542	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000441542	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000441542	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000417496	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000417496	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000417496	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000417496	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
3UTR-3CDS	ENST00000476135	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
3UTR-intron	ENST00000476135	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
3UTR-3UTR	ENST00000476135	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
3UTR-3UTR	ENST00000476135	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000405010	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000405010	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000405010	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000405010	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000428307	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000428307	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000428307	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000428307	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
Frame-shit	ENST00000406072	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000406072	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000406072	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-3UTR	ENST00000406072	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-3CDS	ENST00000456174	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-intron	ENST00000456174	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-3UTR	ENST00000456174	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-3UTR	ENST00000456174	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-3CDS	ENST00000524023	ENST00000367727		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-intron	ENST00000524023	ENST00000460397		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-3UTR	ENST00000524023	ENST00000367726		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
intron-3UTR	ENST00000524023	ENST00000367725		TCGA	RV	UCS	TCGA-N5-A4RT-01A	HDAC9	chr7	18535947	+	C1orf105	chr1	172434439	+
5CDS-intron	ENST00000233809	ENST00000513761		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233809	ENST00000347613		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233809	ENST00000360642		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233809	ENST00000504131		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
5CDS-intron	ENST00000233809	ENST00000506924		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000456764	ENST00000513761		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000456764	ENST00000347613		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000456764	ENST00000360642		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000456764	ENST00000504131		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
intron-intron	ENST00000456764	ENST00000506924		TCGA	RV	UCS	TCGA-N6-A4V9-01A	IGFBP2	chr2	217529159	+	CLCN3	chr4	170623929	+
In-frame	ENST00000407071	ENST00000355875		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000407071	ENST00000366541		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000407071	ENST00000343783		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000407071	ENST00000391846		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000407071	ENST00000496361		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000366518	ENST00000355875		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000366518	ENST00000366541		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000366518	ENST00000343783		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000366518	ENST00000391846		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
5CDS-intron	ENST00000366518	ENST00000496361		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
intron-3CDS	ENST00000479506	ENST00000355875		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
intron-3CDS	ENST00000479506	ENST00000366541		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
intron-3CDS	ENST00000479506	ENST00000343783		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
intron-intron	ENST00000479506	ENST00000391846		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
intron-intron	ENST00000479506	ENST00000496361		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245766085	+	SDCCAG8	chr1	243504341	+
In-frame	ENST00000407071	ENST00000541742		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
In-frame	ENST00000407071	ENST00000490107		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
In-frame	ENST00000407071	ENST00000388985		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
5CDS-5UTR	ENST00000407071	ENST00000366517		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
5CDS-intron	ENST00000407071	ENST00000403792		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000366518	ENST00000541742		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000366518	ENST00000490107		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000366518	ENST00000388985		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-5UTR	ENST00000366518	ENST00000366517		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-intron	ENST00000366518	ENST00000403792		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000479506	ENST00000541742		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000479506	ENST00000490107		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-3CDS	ENST00000479506	ENST00000388985		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-5UTR	ENST00000479506	ENST00000366517		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
intron-intron	ENST00000479506	ENST00000403792		TCGA	RV	UCS	TCGA-NA-A4R0-01A	KIF26B	chr1	245319985	+	SMYD3	chr1	246027188	-
Frame-shit	ENST00000438796	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000438796	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
In-frame	ENST00000438796	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
5CDS-3UTR	ENST00000438796	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000414675	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000414675	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
In-frame	ENST00000414675	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
5CDS-3UTR	ENST00000414675	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000441090	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000441090	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
In-frame	ENST00000441090	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
5CDS-3UTR	ENST00000441090	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000334859	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000334859	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
In-frame	ENST00000334859	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
5CDS-3UTR	ENST00000334859	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000425562	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000425562	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
In-frame	ENST00000425562	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
5CDS-3UTR	ENST00000425562	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
intron-3CDS	ENST00000493726	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
intron-3CDS	ENST00000493726	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
intron-3CDS	ENST00000493726	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
intron-3UTR	ENST00000493726	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000536618	ENST00000319653		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
Frame-shit	ENST00000536618	ENST00000545751		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
In-frame	ENST00000536618	ENST00000543681		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
5CDS-3UTR	ENST00000536618	ENST00000496950		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	LRCH3	chr3	197592342	+	FMN2	chr1	240635672	+
intron-3CDS	ENST00000441750	ENST00000409402		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
intron-3CDS	ENST00000441750	ENST00000410092		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
intron-3CDS	ENST00000441750	ENST00000309836		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
intron-3CDS	ENST00000441750	ENST00000453447		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
intron-3CDS	ENST00000441750	ENST00000383356		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
intron-intron	ENST00000441750	ENST00000464481		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
In-frame	ENST00000281513	ENST00000409402		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
In-frame	ENST00000281513	ENST00000410092		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
In-frame	ENST00000281513	ENST00000309836		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
In-frame	ENST00000281513	ENST00000453447		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
In-frame	ENST00000281513	ENST00000383356		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
5CDS-intron	ENST00000281513	ENST00000464481		TCGA	RV	UCS	TCGA-N8-A4PO-01A	NBAS	chr2	15555670	-	SPIRE1	chr18	12512530	-
5UTR-5UTR	ENST00000335999	ENST00000266395		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCKAP5L	chr12	50222105	-	PDE6H	chr12	15130906	+
5UTR-5UTR	ENST00000480927	ENST00000266395		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCKAP5L	chr12	50222105	-	PDE6H	chr12	15130906	+
5CDS-5UTR	ENST00000268712	ENST00000262293		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16089868	-	PRR11	chr17	57247109	+
5CDS-5UTR	ENST00000395851	ENST00000262293		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16089868	-	PRR11	chr17	57247109	+
intron-5UTR	ENST00000395857	ENST00000262293		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16089868	-	PRR11	chr17	57247109	+
intron-5UTR	ENST00000395848	ENST00000262293		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16089868	-	PRR11	chr17	57247109	+
intron-5UTR	ENST00000583226	ENST00000262293		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16089868	-	PRR11	chr17	57247109	+
3UTR-3CDS	ENST00000519049	ENST00000298139		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NKAIN3	chr8	63161686	+	WRN	chr8	31030511	+
Frame-shit	ENST00000523211	ENST00000298139		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NKAIN3	chr8	63161686	+	WRN	chr8	31030511	+
Frame-shit	ENST00000328472	ENST00000298139		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NKAIN3	chr8	63161686	+	WRN	chr8	31030511	+
Frame-shit	ENST00000605788	ENST00000371721		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000605788	ENST00000277874		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000605788	ENST00000336152		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000605788	ENST00000371719		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000405356	ENST00000371721		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000405356	ENST00000277874		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000405356	ENST00000336152		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000405356	ENST00000371719		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
5UTR-3CDS	ENST00000603742	ENST00000371721		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
5UTR-3CDS	ENST00000603742	ENST00000277874		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
5UTR-3CDS	ENST00000603742	ENST00000336152		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
5UTR-3CDS	ENST00000603742	ENST00000371719		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000488254	ENST00000371721		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000488254	ENST00000277874		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000488254	ENST00000336152		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000488254	ENST00000371719		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
intron-3CDS	ENST00000477977	ENST00000371721		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
intron-3CDS	ENST00000477977	ENST00000277874		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
intron-3CDS	ENST00000477977	ENST00000336152		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
intron-3CDS	ENST00000477977	ENST00000371719		TCGA	RV	UCS	TCGA-NG-A4VU-01A	NOLC1	chr10	103912287	+	HTR7	chr10	92509351	-
Frame-shit	ENST00000399951	ENST00000409413		TCGA	RV	UCS	TCGA-N5-A4RV-01A	NPRL3	chr16	160523	-	C16orf11	chr16	614674	+
Frame-shit	ENST00000399953	ENST00000409413		TCGA	RV	UCS	TCGA-N5-A4RV-01A	NPRL3	chr16	160523	-	C16orf11	chr16	614674	+
5UTR-3CDS	ENST00000405960	ENST00000409413		TCGA	RV	UCS	TCGA-N5-A4RV-01A	NPRL3	chr16	160523	-	C16orf11	chr16	614674	+
In-frame	ENST00000264833	ENST00000342247		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
5CDS-5UTR	ENST00000264833	ENST00000400585		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
5CDS-3UTR	ENST00000264833	ENST00000497534		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
5CDS-3UTR	ENST00000264833	ENST00000400573		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
5CDS-3UTR	ENST00000264833	ENST00000262608		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
intron-3CDS	ENST00000590841	ENST00000342247		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
intron-5UTR	ENST00000590841	ENST00000400585		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
intron-3UTR	ENST00000590841	ENST00000497534		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
intron-3UTR	ENST00000590841	ENST00000400573		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
intron-3UTR	ENST00000590841	ENST00000262608		TCGA	RV	UCS	TCGA-NG-A4VU-01A	OLFM2	chr19	10046980	-	CECR2	chr22	17956630	+
5UTR-3CDS	ENST00000495222	ENST00000319394		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
5UTR-3CDS	ENST00000495222	ENST00000361771		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000235532	ENST00000319394		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000235532	ENST00000361771		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000356637	ENST00000319394		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000356637	ENST00000361771		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000433045	ENST00000319394		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000433045	ENST00000361771		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000315643	ENST00000319394		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
In-frame	ENST00000315643	ENST00000361771		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
intron-3CDS	ENST00000354267	ENST00000319394		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
intron-3CDS	ENST00000354267	ENST00000361771		TCGA	RV	UCS	TCGA-N8-A4PP-01A	OSCP1	chr1	36887751	-	WDTC1	chr1	27614165	+
5CDS-intron	ENST00000320580	ENST00000413292		TCGA	RV	UCS	TCGA-NA-A5I1-01A	PACS1	chr11	65838313	+	PPP2R5B	chr11	64693320	+
5CDS-intron	ENST00000320580	ENST00000164133		TCGA	RV	UCS	TCGA-NA-A5I1-01A	PACS1	chr11	65838313	+	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000529757	ENST00000413292		TCGA	RV	UCS	TCGA-NA-A5I1-01A	PACS1	chr11	65838313	+	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000529757	ENST00000164133		TCGA	RV	UCS	TCGA-NA-A5I1-01A	PACS1	chr11	65838313	+	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000524815	ENST00000413292		TCGA	RV	UCS	TCGA-NA-A5I1-01A	PACS1	chr11	65838313	+	PPP2R5B	chr11	64693320	+
intron-intron	ENST00000524815	ENST00000164133		TCGA	RV	UCS	TCGA-NA-A5I1-01A	PACS1	chr11	65838313	+	PPP2R5B	chr11	64693320	+
Frame-shit	ENST00000255882	ENST00000535622		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000400246		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000266091		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000382105		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000400249		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000382112		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000382111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000255882	ENST00000400248		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000255882	ENST00000494060		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000255882	ENST00000536766		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000255882	ENST00000400242		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000255882	ENST00000539165		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000535622		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000400246		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000266091		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000382105		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000400249		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000382112		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000382111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
Frame-shit	ENST00000572273	ENST00000400248		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000572273	ENST00000494060		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000572273	ENST00000536766		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000572273	ENST00000400242		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
5CDS-intron	ENST00000572273	ENST00000539165		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000535622		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000400246		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000266091		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000382105		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000400249		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000382112		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000382111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000414196	ENST00000400248		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000414196	ENST00000494060		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000414196	ENST00000536766		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000414196	ENST00000400242		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000414196	ENST00000539165		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000535622		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000400246		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000266091		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000382105		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000400249		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000382112		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000382111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000466162	ENST00000400248		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000466162	ENST00000494060		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000466162	ENST00000536766		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000466162	ENST00000400242		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-intron	ENST00000466162	ENST00000539165		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PI4KA	chr22	21101871	-	DEPDC5	chr22	32234671	+
intron-3CDS	ENST00000393934	ENST00000352690		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000393934	ENST00000283285		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
intron-intron	ENST00000393934	ENST00000438817		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
3UTR-3CDS	ENST00000477665	ENST00000352690		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
3UTR-3CDS	ENST00000477665	ENST00000283285		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
3UTR-intron	ENST00000477665	ENST00000438817		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000472215	ENST00000352690		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
intron-3CDS	ENST00000472215	ENST00000283285		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
intron-intron	ENST00000472215	ENST00000438817		TCGA	RV	UCS	TCGA-N8-A56S-01A	PLCXD2	chr3	111451550	+	CD96	chr3	111342601	+
Frame-shit	ENST00000263331	ENST00000377559		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000263331	ENST00000265459		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000263331	ENST00000301894		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000263331	ENST00000377551		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000263331	ENST00000409571		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000263331	ENST00000496291		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000541869	ENST00000377559		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000541869	ENST00000265459		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000541869	ENST00000301894		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000541869	ENST00000377551		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000541869	ENST00000409571		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000541869	ENST00000496291		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-3CDS	ENST00000409894	ENST00000377559		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-3CDS	ENST00000409894	ENST00000265459		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000409894	ENST00000301894		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000409894	ENST00000377551		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000409894	ENST00000409571		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000409894	ENST00000496291		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000537335	ENST00000377559		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000537335	ENST00000265459		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000537335	ENST00000301894		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000537335	ENST00000377551		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000537335	ENST00000409571		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000537335	ENST00000496291		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000417433	ENST00000377559		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
Frame-shit	ENST00000417433	ENST00000265459		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000417433	ENST00000301894		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000417433	ENST00000377551		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000417433	ENST00000409571		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-intron	ENST00000417433	ENST00000496291		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-3CDS	ENST00000498054	ENST00000377559		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-3CDS	ENST00000498054	ENST00000265459		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000498054	ENST00000301894		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000498054	ENST00000377551		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000498054	ENST00000409571		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
intron-intron	ENST00000498054	ENST00000496291		TCGA	RV	UCS	TCGA-NF-A4WX-01A	POLR1B	chr2	113317151	+	NRXN2	chr11	64436076	-
5CDS-5UTR	ENST00000433473	ENST00000372583		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000433473	ENST00000372584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000433473	ENST00000247584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000433473	ENST00000429157		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000433473	ENST00000460604		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000372775	ENST00000372583		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372775	ENST00000372584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372775	ENST00000247584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372775	ENST00000429157		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000372775	ENST00000460604		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-5UTR	ENST00000449045	ENST00000372583		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000449045	ENST00000372584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000449045	ENST00000247584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000449045	ENST00000429157		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-intron	ENST00000449045	ENST00000460604		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-5UTR	ENST00000530076	ENST00000372583		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000530076	ENST00000372584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000530076	ENST00000247584		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000530076	ENST00000429157		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
intron-intron	ENST00000530076	ENST00000460604		TCGA	RV	UCS	TCGA-N7-A59B-01A	PPT1	chr1	40555082	-	HIVEP3	chr1	42166666	-
5CDS-3UTR	ENST00000321437	ENST00000491145		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000321437	ENST00000395720		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000321437	ENST00000357698		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000321437	ENST00000380230		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-intron	ENST00000321437	ENST00000496660		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-intron	ENST00000321437	ENST00000319580		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-intron	ENST00000321437	ENST00000395723		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000448330	ENST00000491145		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000448330	ENST00000395720		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000448330	ENST00000357698		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-3UTR	ENST00000448330	ENST00000380230		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-intron	ENST00000448330	ENST00000496660		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-intron	ENST00000448330	ENST00000319580		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
5CDS-intron	ENST00000448330	ENST00000395723		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RAB8B	chr15	63481947	+	ANKDD1A	chr15	65207996	+
intron-5UTR	ENST00000375715	ENST00000380274		TCGA	RV	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94712149	-	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000375715	ENST00000380272		TCGA	RV	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94712149	-	FAM50B	chr6	3850023	+
5CDS-5UTR	ENST00000375708	ENST00000380274		TCGA	RV	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94712149	-	FAM50B	chr6	3850023	+
5CDS-5UTR	ENST00000375708	ENST00000380272		TCGA	RV	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94712149	-	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000550066	ENST00000380274		TCGA	RV	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94712149	-	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000550066	ENST00000380272		TCGA	RV	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94712149	-	FAM50B	chr6	3850023	+
In-frame	ENST00000373001	ENST00000372990		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
In-frame	ENST00000373001	ENST00000289248		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
In-frame	ENST00000373001	ENST00000538156		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
In-frame	ENST00000373001	ENST00000372985		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
5CDS-intron	ENST00000373001	ENST00000540558		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
intron-3CDS	ENST00000474456	ENST00000372990		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
intron-3CDS	ENST00000474456	ENST00000289248		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
intron-3CDS	ENST00000474456	ENST00000538156		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
intron-3CDS	ENST00000474456	ENST00000372985		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
intron-intron	ENST00000474456	ENST00000540558		TCGA	RV	UCS	TCGA-N6-A4VG-01A	RRAGC	chr1	39317287	-	RHBDL2	chr1	39377106	-
In-frame	ENST00000413852	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000413852	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000413852	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-5UTR	ENST00000413852	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-3UTR	ENST00000413852	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-3UTR	ENST00000413852	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-intron	ENST00000413852	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000002829	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000002829	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000002829	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-5UTR	ENST00000002829	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-3UTR	ENST00000002829	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-3UTR	ENST00000002829	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-intron	ENST00000002829	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000434342	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000434342	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
In-frame	ENST00000434342	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-5UTR	ENST00000434342	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-3UTR	ENST00000434342	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-3UTR	ENST00000434342	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
5CDS-intron	ENST00000434342	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SEMA3F	chr3	50214294	+	RBM6	chr3	50095161	+
Frame-shit	ENST00000327443	ENST00000393461		TCGA	RV	UCS	TCGA-NF-A4WU-01A	SP1	chr12	53777406	+	WNT9B	chr17	44949883	+
Frame-shit	ENST00000327443	ENST00000290015		TCGA	RV	UCS	TCGA-NF-A4WU-01A	SP1	chr12	53777406	+	WNT9B	chr17	44949883	+
Frame-shit	ENST00000426431	ENST00000393461		TCGA	RV	UCS	TCGA-NF-A4WU-01A	SP1	chr12	53777406	+	WNT9B	chr17	44949883	+
Frame-shit	ENST00000426431	ENST00000290015		TCGA	RV	UCS	TCGA-NF-A4WU-01A	SP1	chr12	53777406	+	WNT9B	chr17	44949883	+
5CDS-3UTR	ENST00000373302	ENST00000367203		TCGA	RV	UCS	TCGA-N8-A56S-01A	STXBP1	chr9	130374719	+	SOX13	chr1	204082043	+
5CDS-5UTR	ENST00000373302	ENST00000367204		TCGA	RV	UCS	TCGA-N8-A56S-01A	STXBP1	chr9	130374719	+	SOX13	chr1	204082043	+
5CDS-3UTR	ENST00000373299	ENST00000367203		TCGA	RV	UCS	TCGA-N8-A56S-01A	STXBP1	chr9	130374719	+	SOX13	chr1	204082043	+
5CDS-5UTR	ENST00000373299	ENST00000367204		TCGA	RV	UCS	TCGA-N8-A56S-01A	STXBP1	chr9	130374719	+	SOX13	chr1	204082043	+
intron-3UTR	ENST00000481942	ENST00000367203		TCGA	RV	UCS	TCGA-N8-A56S-01A	STXBP1	chr9	130374719	+	SOX13	chr1	204082043	+
intron-5UTR	ENST00000481942	ENST00000367204		TCGA	RV	UCS	TCGA-N8-A56S-01A	STXBP1	chr9	130374719	+	SOX13	chr1	204082043	+
Frame-shit	ENST00000357242	ENST00000324342		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000357242	ENST00000255499		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000310452	ENST00000324342		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000310452	ENST00000255499		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000481617	ENST00000324342		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000481617	ENST00000255499		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000276175	ENST00000324342		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
Frame-shit	ENST00000276175	ENST00000255499		TCGA	RV	UCS	TCGA-N6-A4V9-01A	TBC1D8B	chrX	106046213	+	RNF128	chrX	106028295	+
intron-3CDS	ENST00000540797	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000540797	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000540797	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000540797	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000380324	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000380324	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000380324	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000380324	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000268049	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000268049	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000268049	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000268049	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000536001	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000536001	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000536001	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000536001	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000539772	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000539772	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000539772	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000539772	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000558285	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000558285	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000558285	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
5CDS-intron	ENST00000558285	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000559711	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000559711	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000559711	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000559711	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000558218	ENST00000561311		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-3CDS	ENST00000558218	ENST00000306829		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000558218	ENST00000559908		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
intron-intron	ENST00000558218	ENST00000472902		TCGA	RV	UCS	TCGA-N5-A4RA-01A	USP3	chr15	63829355	+	TLN2	chr15	63111715	+
Frame-shit	ENST00000333538	ENST00000406775		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
Frame-shit	ENST00000333538	ENST00000342771		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
5CDS-intron	ENST00000333538	ENST00000403018		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
5CDS-intron	ENST00000333538	ENST00000489774		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
intron-3CDS	ENST00000498380	ENST00000406775		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
intron-3CDS	ENST00000498380	ENST00000342771		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
intron-intron	ENST00000498380	ENST00000403018		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
intron-intron	ENST00000498380	ENST00000489774		TCGA	RV	UCS	TCGA-NA-A4R0-01A	WBSCR17	chr7	70598026	+	AUTS2	chr7	70229738	+
3UTR-3CDS	ENST00000494757	ENST00000017003		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
3UTR-3CDS	ENST00000494757	ENST00000507602		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000323571	ENST00000017003		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000323571	ENST00000507602		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000585043	ENST00000017003		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000585043	ENST00000507602		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000394103	ENST00000017003		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000394103	ENST00000507602		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000536600	ENST00000017003		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-3CDS	ENST00000536600	ENST00000507602		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000583130	ENST00000017003		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
intron-3CDS	ENST00000583130	ENST00000507602		TCGA	RV	UCS	TCGA-N8-A4PM-01A	WIPF2	chr17	38375744	+	XYLT2	chr17	48430991	+
5UTR-5UTR	ENST00000298139	ENST00000519476		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000298139	ENST00000297720		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000298139	ENST00000524874		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000298139	ENST00000379957		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
5UTR-5UTR	ENST00000298139	ENST00000523983		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
5UTR-intron	ENST00000298139	ENST00000527710		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
5UTR-intron	ENST00000298139	ENST00000528827		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WRN	chr8	30891489	+	LETM2	chr8	38245468	+
Frame-shit	ENST00000375743	ENST00000375592		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
5CDS-intron	ENST00000375743	ENST00000478089		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
intron-3CDS	ENST00000537142	ENST00000375592		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
intron-intron	ENST00000537142	ENST00000478089		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
Frame-shit	ENST00000375733	ENST00000375592		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
5CDS-intron	ENST00000375733	ENST00000478089		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
Frame-shit	ENST00000448462	ENST00000375592		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
5CDS-intron	ENST00000448462	ENST00000478089		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
5UTR-3CDS	ENST00000479282	ENST00000375592		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
5UTR-intron	ENST00000479282	ENST00000478089		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZBTB17	chr1	16274786	-	FBXO42	chr1	16583254	-
5CDS-5UTR	ENST00000355537	ENST00000356805		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZNF536	chr19	31040421	+	SPTBN1	chr2	54753509	+
5CDS-intron	ENST00000355537	ENST00000333896		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZNF536	chr19	31040421	+	SPTBN1	chr2	54753509	+
intron-5UTR	ENST00000590564	ENST00000356805		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZNF536	chr19	31040421	+	SPTBN1	chr2	54753509	+
intron-intron	ENST00000590564	ENST00000333896		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZNF536	chr19	31040421	+	SPTBN1	chr2	54753509	+
In-frame	ENST00000409068	ENST00000373615		TCGA	RV	UCS	TCGA-N5-A59F-01A	AAK1	chr2	69783992	-	LHX2	chr9	126776240	+
In-frame	ENST00000409085	ENST00000373615		TCGA	RV	UCS	TCGA-N5-A59F-01A	AAK1	chr2	69783992	-	LHX2	chr9	126776240	+
In-frame	ENST00000406297	ENST00000373615		TCGA	RV	UCS	TCGA-N5-A59F-01A	AAK1	chr2	69783992	-	LHX2	chr9	126776240	+
intron-3CDS	ENST00000470281	ENST00000373615		TCGA	RV	UCS	TCGA-N5-A59F-01A	AAK1	chr2	69783992	-	LHX2	chr9	126776240	+
In-frame	ENST00000412704	ENST00000376747		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000412704	ENST00000376714		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000412704	ENST00000397618		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000412704	ENST00000467305		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000412704	ENST00000376712		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
In-frame	ENST00000376887	ENST00000376747		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000376887	ENST00000376714		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000376887	ENST00000397618		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000376887	ENST00000467305		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000376887	ENST00000376712		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
In-frame	ENST00000536256	ENST00000376747		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000536256	ENST00000376714		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000536256	ENST00000397618		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000536256	ENST00000467305		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000536256	ENST00000376712		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
In-frame	ENST00000431522	ENST00000376747		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000431522	ENST00000376714		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000431522	ENST00000397618		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000431522	ENST00000467305		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000431522	ENST00000376712		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
In-frame	ENST00000538287	ENST00000376747		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000538287	ENST00000376714		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000538287	ENST00000397618		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000538287	ENST00000467305		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
5CDS-intron	ENST00000538287	ENST00000376712		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
intron-3CDS	ENST00000474158	ENST00000376747		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
intron-intron	ENST00000474158	ENST00000376714		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
intron-intron	ENST00000474158	ENST00000397618		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
intron-intron	ENST00000474158	ENST00000467305		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
intron-intron	ENST00000474158	ENST00000376712		TCGA	RV	UCS	TCGA-N8-A56S-01A	ABCC4	chr13	95953495	-	UGGT2	chr13	96489456	-
Frame-shit	ENST00000336498	ENST00000296582		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148544985	+
Frame-shit	ENST00000336498	ENST00000508208		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148544985	+
intron-3CDS	ENST00000414545	ENST00000296582		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148544985	+
intron-3CDS	ENST00000414545	ENST00000508208		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148544985	+
intron-3CDS	ENST00000510076	ENST00000296582		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148544985	+
intron-3CDS	ENST00000510076	ENST00000508208		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ARHGAP10	chr4	148653606	+	TMEM184C	chr4	148544985	+
Frame-shit	ENST00000343245	ENST00000344191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000343245	ENST00000351017		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000343245	ENST00000392108		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000343245	ENST00000392112		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000343245	ENST00000366806		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000343245	ENST00000447894		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000343245	ENST00000400822		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5CDS-intron	ENST00000343245	ENST00000507679		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000344191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000351017		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000392108		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000392112		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000366806		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000447894		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369070	ENST00000400822		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5CDS-intron	ENST00000369070	ENST00000507679		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000344191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000351017		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000392108		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000392112		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000366806		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000447894		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
In-frame	ENST00000369076	ENST00000400822		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5CDS-intron	ENST00000369076	ENST00000507679		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000344191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000351017		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000392108		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000392112		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000366806		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000447894		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-3CDS	ENST00000360666	ENST00000400822		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
3UTR-intron	ENST00000360666	ENST00000507679		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000344191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000351017		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000392108		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000392112		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000366806		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000447894		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-3CDS	ENST00000475645	ENST00000400822		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
5UTR-intron	ENST00000475645	ENST00000507679		TCGA	RV	UCS	TCGA-NA-A4R1-01A	ATG5	chr6	106649847	-	MLLT4	chr6	168265231	+
Frame-shit	ENST00000311637	ENST00000371518		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
Frame-shit	ENST00000311637	ENST00000361387		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000311637	ENST00000477786		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000311637	ENST00000371523		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000311637	ENST00000346617		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000311637	ENST00000371515		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000311637	ENST00000216923		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
Frame-shit	ENST00000338821	ENST00000371518		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
Frame-shit	ENST00000338821	ENST00000361387		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000338821	ENST00000477786		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000338821	ENST00000371523		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000338821	ENST00000346617		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000338821	ENST00000371515		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000338821	ENST00000216923		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
Frame-shit	ENST00000402822	ENST00000371518		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
Frame-shit	ENST00000402822	ENST00000361387		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000402822	ENST00000477786		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000402822	ENST00000371523		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000402822	ENST00000346617		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000402822	ENST00000371515		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000402822	ENST00000216923		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
In-frame	ENST00000477492	ENST00000371518		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
In-frame	ENST00000477492	ENST00000361387		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000477492	ENST00000477786		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-5UTR	ENST00000477492	ENST00000371523		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000477492	ENST00000346617		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000477492	ENST00000371515		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
5CDS-intron	ENST00000477492	ENST00000216923		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ATP9A	chr20	50342358	-	ZFP64	chr20	50715126	-
intron-3CDS	ENST00000260502	ENST00000436063		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-intron	ENST00000260502	ENST00000460191		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
5UTR-3CDS	ENST00000370244	ENST00000436063		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
5UTR-intron	ENST00000370244	ENST00000460191		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-3CDS	ENST00000370243	ENST00000436063		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-intron	ENST00000370243	ENST00000460191		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-3CDS	ENST00000370247	ENST00000436063		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-intron	ENST00000370247	ENST00000460191		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-3CDS	ENST00000539242	ENST00000436063		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-intron	ENST00000539242	ENST00000460191		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-3CDS	ENST00000466632	ENST00000436063		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
intron-intron	ENST00000466632	ENST00000460191		TCGA	RV	UCS	TCGA-N8-A4PP-01A	BCAR3	chr1	94311123	-	DNTTIP2	chr1	94338770	-
5CDS-5UTR	ENST00000305877	ENST00000407464		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000305877	ENST00000407598		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000305877	ENST00000443632		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000359540	ENST00000407464		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000359540	ENST00000407598		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000359540	ENST00000443632		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000398512	ENST00000407464		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000398512	ENST00000407598		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-5UTR	ENST00000398512	ENST00000443632		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
intron-5UTR	ENST00000436990	ENST00000407464		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
intron-5UTR	ENST00000436990	ENST00000407598		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
intron-5UTR	ENST00000436990	ENST00000443632		TCGA	RV	UCS	TCGA-NA-A4QY-01A	BCR	chr22	23524426	+	HIC2	chr22	21797048	+
5CDS-intron	ENST00000287598	ENST00000559624		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000287598	ENST00000382727		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000287598	ENST00000263791		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000287598	ENST00000560648		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000287598	ENST00000559311		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000412359	ENST00000559624		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000412359	ENST00000382727		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000412359	ENST00000263791		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000412359	ENST00000560648		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000412359	ENST00000559311		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
intron-intron	ENST00000560120	ENST00000559624		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
intron-intron	ENST00000560120	ENST00000382727		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
intron-intron	ENST00000560120	ENST00000263791		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
intron-intron	ENST00000560120	ENST00000560648		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
intron-intron	ENST00000560120	ENST00000559311		TCGA	RV	UCS	TCGA-N8-A56S-01A	BUB1B	chr15	40510763	+	EIF2AK4	chr15	40278006	+
5CDS-intron	ENST00000262738	ENST00000476901		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
5CDS-intron	ENST00000262738	ENST00000290846		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
5CDS-intron	ENST00000262738	ENST00000381019		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
5CDS-intron	ENST00000262738	ENST00000424260		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000395964	ENST00000476901		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000395964	ENST00000290846		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000395964	ENST00000381019		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000395964	ENST00000424260		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000497509	ENST00000476901		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000497509	ENST00000290846		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000497509	ENST00000381019		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
intron-intron	ENST00000497509	ENST00000424260		TCGA	RV	UCS	TCGA-ND-A4WC-01A	CELSR1	chr22	46780440	-	TRMU	chr22	46751341	+
5CDS-5UTR	ENST00000261726	ENST00000552912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
5CDS-5UTR	ENST00000261726	ENST00000242591		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
5CDS-5UTR	ENST00000261726	ENST00000361948		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
5CDS-intron	ENST00000261726	ENST00000549009		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
intron-5UTR	ENST00000551604	ENST00000552912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
intron-5UTR	ENST00000551604	ENST00000242591		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
intron-5UTR	ENST00000551604	ENST00000361948		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
intron-intron	ENST00000551604	ENST00000549009		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CUX2	chr12	111472044	+	IFT81	chr12	110565165	+
Frame-shit	ENST00000264018	ENST00000389048		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
5CDS-intron	ENST00000264018	ENST00000431873		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
5CDS-intron	ENST00000264018	ENST00000498037		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
Frame-shit	ENST00000534980	ENST00000389048		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
5CDS-intron	ENST00000534980	ENST00000431873		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
5CDS-intron	ENST00000534980	ENST00000498037		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
Frame-shit	ENST00000526070	ENST00000389048		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
5CDS-intron	ENST00000526070	ENST00000431873		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
5CDS-intron	ENST00000526070	ENST00000498037		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	DDX6	chr11	118656761	-	ALK	chr2	29606725	-
Frame-shit	ENST00000426333	ENST00000430334		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-5UTR	ENST00000426333	ENST00000580404		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-5UTR	ENST00000426333	ENST00000421073		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000426333	ENST00000547603		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000426333	ENST00000548376		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000426333	ENST00000549277		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
Frame-shit	ENST00000592576	ENST00000430334		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-5UTR	ENST00000592576	ENST00000580404		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-5UTR	ENST00000592576	ENST00000421073		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000592576	ENST00000547603		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000592576	ENST00000548376		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000592576	ENST00000549277		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
In-frame	ENST00000591382	ENST00000430334		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-5UTR	ENST00000591382	ENST00000580404		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-5UTR	ENST00000591382	ENST00000421073		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000591382	ENST00000547603		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000591382	ENST00000548376		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5CDS-intron	ENST00000591382	ENST00000549277		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-3CDS	ENST00000402521	ENST00000430334		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-5UTR	ENST00000402521	ENST00000580404		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-5UTR	ENST00000402521	ENST00000421073		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-intron	ENST00000402521	ENST00000547603		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-intron	ENST00000402521	ENST00000548376		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-intron	ENST00000402521	ENST00000549277		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-3CDS	ENST00000589211	ENST00000430334		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-5UTR	ENST00000589211	ENST00000580404		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-5UTR	ENST00000589211	ENST00000421073		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-intron	ENST00000589211	ENST00000547603		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-intron	ENST00000589211	ENST00000548376		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
intron-intron	ENST00000589211	ENST00000549277		TCGA	RV	UCS	TCGA-N5-A4RU-01A	EFTUD2	chr17	42971785	-	PLEKHM1	chr17	43523029	-
5UTR-5UTR	ENST00000247161	ENST00000400314		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000247161	ENST00000400310		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000247161	ENST00000449640		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000247161	ENST00000400309		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000247161	ENST00000400308		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000247161	ENST00000400304		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000247161	ENST00000423045		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000592066	ENST00000400314		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000592066	ENST00000400310		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000592066	ENST00000449640		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000592066	ENST00000400309		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000592066	ENST00000400308		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000592066	ENST00000400304		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000592066	ENST00000423045		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000376983	ENST00000400314		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000376983	ENST00000400310		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000376983	ENST00000449640		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000376983	ENST00000400309		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000376983	ENST00000400308		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000376983	ENST00000400304		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000376983	ENST00000423045		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000343894	ENST00000400314		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000343894	ENST00000400310		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000343894	ENST00000449640		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000343894	ENST00000400309		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000343894	ENST00000400308		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000343894	ENST00000400304		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000343894	ENST00000423045		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000468956	ENST00000400314		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000468956	ENST00000400310		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000468956	ENST00000449640		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000468956	ENST00000400309		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-5UTR	ENST00000468956	ENST00000400308		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000468956	ENST00000400304		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
5UTR-intron	ENST00000468956	ENST00000423045		TCGA	RV	UCS	TCGA-ND-A4W6-01A	ELK1	chrX	47509822	-	PCBP3	chr21	47269875	+
In-frame	ENST00000356093	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000356093	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000356093	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000356093	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000398863	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000398863	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000398863	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000398863	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000343067	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000343067	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000343067	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000343067	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000349460	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000349460	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000349460	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000349460	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000373800	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000373800	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000373800	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000373800	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000347529	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000347529	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000347529	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000347529	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000373798	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000373798	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000373798	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000373798	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000373797	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000373797	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-5UTR	ENST00000373797	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
5CDS-3UTR	ENST00000373797	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000460378	ENST00000542507		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
intron-3CDS	ENST00000460378	ENST00000373812		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
intron-5UTR	ENST00000460378	ENST00000541996		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
intron-3UTR	ENST00000460378	ENST00000478283		TCGA	RV	UCS	TCGA-N8-A4PI-01A	EPB41	chr1	29320054	+	YTHDF2	chr1	29068915	+
In-frame	ENST00000378204	ENST00000409003		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000314727		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5CDS-intron	ENST00000378204	ENST00000527515		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	EXT1	chr8	119122324	-	SAMD12	chr8	119209971	-
5UTR-3CDS	ENST00000311172	ENST00000318560		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FCHSD2	chr11	72794740	-	ABL1	chr9	133729451	+
Frame-shit	ENST00000409314	ENST00000318560		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FCHSD2	chr11	72794740	-	ABL1	chr9	133729451	+
Frame-shit	ENST00000409418	ENST00000318560		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FCHSD2	chr11	72794740	-	ABL1	chr9	133729451	+
5UTR-3CDS	ENST00000458644	ENST00000318560		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FCHSD2	chr11	72794740	-	ABL1	chr9	133729451	+
5UTR-3CDS	ENST00000409853	ENST00000318560		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FCHSD2	chr11	72794740	-	ABL1	chr9	133729451	+
intron-3CDS	ENST00000409263	ENST00000318560		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FCHSD2	chr11	72794740	-	ABL1	chr9	133729451	+
5CDS-5UTR	ENST00000307968	ENST00000247087		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000307968	ENST00000374011		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000307968	ENST00000480033		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000307954	ENST00000247087		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000307954	ENST00000374011		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000307954	ENST00000480033		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000510461	ENST00000247087		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000510461	ENST00000374011		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000510461	ENST00000480033		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000511848	ENST00000247087		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000511848	ENST00000374011		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
5CDS-5UTR	ENST00000511848	ENST00000480033		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	FNIP1	chr5	131080257	-	AHDC1	chr1	27885394	-
In-frame	ENST00000264433	ENST00000460056		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
In-frame	ENST00000264433	ENST00000307765		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
5CDS-intron	ENST00000264433	ENST00000423548		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
5CDS-intron	ENST00000264433	ENST00000448688		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
5CDS-intron	ENST00000264433	ENST00000343542		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
5CDS-intron	ENST00000264433	ENST00000470033		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
5CDS-intron	ENST00000264433	ENST00000472969		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-3CDS	ENST00000379346	ENST00000460056		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-3CDS	ENST00000379346	ENST00000307765		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000379346	ENST00000423548		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000379346	ENST00000448688		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000379346	ENST00000343542		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000379346	ENST00000470033		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000379346	ENST00000472969		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-3CDS	ENST00000505445	ENST00000460056		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-3CDS	ENST00000505445	ENST00000307765		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000505445	ENST00000423548		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000505445	ENST00000448688		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000505445	ENST00000343542		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000505445	ENST00000470033		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
intron-intron	ENST00000505445	ENST00000472969		TCGA	RV	UCS	TCGA-NA-A4QY-01A	FNIP2	chr4	159690471	+	RXFP1	chr4	159559160	+
Frame-shit	ENST00000435213	ENST00000424082		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000435213	ENST00000259351		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000435213	ENST00000394022		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000435213	ENST00000373436		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000435213	ENST00000373434		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
5CDS-intron	ENST00000435213	ENST00000394011		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
5CDS-intron	ENST00000435213	ENST00000480993		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000314904	ENST00000424082		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000314904	ENST00000259351		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000314904	ENST00000394022		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000314904	ENST00000373436		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000314904	ENST00000373434		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
5CDS-intron	ENST00000314904	ENST00000394011		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
5CDS-intron	ENST00000314904	ENST00000480993		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000373387	ENST00000424082		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000373387	ENST00000259351		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000373387	ENST00000394022		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000373387	ENST00000373436		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000373387	ENST00000373434		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
5CDS-intron	ENST00000373387	ENST00000394011		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
5CDS-intron	ENST00000373387	ENST00000480993		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-3CDS	ENST00000496711	ENST00000424082		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-3CDS	ENST00000496711	ENST00000259351		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-3CDS	ENST00000496711	ENST00000394022		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-3CDS	ENST00000496711	ENST00000373436		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-3CDS	ENST00000496711	ENST00000373434		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-intron	ENST00000496711	ENST00000394011		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
intron-intron	ENST00000496711	ENST00000480993		TCGA	RV	UCS	TCGA-NG-A4VU-01A	GARNL3	chr9	130053521	+	RALGPS1	chr9	129936994	+
Frame-shit	ENST00000204679	ENST00000535977		TCGA	RV	UCS	TCGA-N5-A4RA-01A	GNPTG	chr16	1402307	+	RAB40C	chr16	675432	+
Frame-shit	ENST00000204679	ENST00000539661		TCGA	RV	UCS	TCGA-N5-A4RA-01A	GNPTG	chr16	1402307	+	RAB40C	chr16	675432	+
Frame-shit	ENST00000204679	ENST00000538492		TCGA	RV	UCS	TCGA-N5-A4RA-01A	GNPTG	chr16	1402307	+	RAB40C	chr16	675432	+
Frame-shit	ENST00000204679	ENST00000248139		TCGA	RV	UCS	TCGA-N5-A4RA-01A	GNPTG	chr16	1402307	+	RAB40C	chr16	675432	+
5UTR-3CDS	ENST00000265755	ENST00000361545		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000265755	ENST00000223398		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000265755	ENST00000395060		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000455841	ENST00000361545		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000455841	ENST00000223398		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000455841	ENST00000395060		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000424337	ENST00000361545		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000424337	ENST00000223398		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
5UTR-3CDS	ENST00000424337	ENST00000395060		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
intron-3CDS	ENST00000476977	ENST00000361545		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
intron-3CDS	ENST00000476977	ENST00000223398		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
intron-3CDS	ENST00000476977	ENST00000395060		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
intron-3CDS	ENST00000489094	ENST00000361545		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
intron-3CDS	ENST00000489094	ENST00000223398		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
intron-3CDS	ENST00000489094	ENST00000395060		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	GTF2IRD1	chr7	73868506	+	CLIP2	chr7	73790217	+
In-frame	ENST00000254963	ENST00000344773		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000254963	ENST00000379624		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000254963	ENST00000342045		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000254963	ENST00000379632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000254963	ENST00000361704		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000254963	ENST00000603461		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
In-frame	ENST00000542646	ENST00000344773		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000542646	ENST00000379624		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000542646	ENST00000342045		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000542646	ENST00000379632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000542646	ENST00000361704		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
5CDS-intron	ENST00000542646	ENST00000603461		TCGA	RV	UCS	TCGA-N5-A4RA-01A	HSPA12B	chr20	3731554	+	BRE	chr2	28550141	+
intron-3CDS	ENST00000361339	ENST00000301732		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
intron-3CDS	ENST00000361339	ENST00000382381		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
intron-intron	ENST00000361339	ENST00000567910		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
Frame-shit	ENST00000426508	ENST00000301732		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
Frame-shit	ENST00000426508	ENST00000382381		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
5CDS-intron	ENST00000426508	ENST00000567910		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
5UTR-3CDS	ENST00000439987	ENST00000301732		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
5UTR-3CDS	ENST00000439987	ENST00000382381		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
5UTR-intron	ENST00000439987	ENST00000567910		TCGA	RV	UCS	TCGA-N6-A4VE-01A	IFT140	chr16	1657121	-	ABCA3	chr16	2369841	-
Frame-shit	ENST00000368594	ENST00000368615		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000392638		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000344079		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000356571		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000368614		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000368613		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000368612		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000368610		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368594	ENST00000432555		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
5CDS-intron	ENST00000368594	ENST00000475747		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000368615		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000392638		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000344079		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000356571		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000368614		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000368613		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000368612		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000368610		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000368593	ENST00000432555		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
5CDS-intron	ENST00000368593	ENST00000475747		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000368615		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000392638		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000344079		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000356571		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000368614		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000368613		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000368612		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000368610		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-3CDS	ENST00000487614	ENST00000432555		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
intron-intron	ENST00000487614	ENST00000475747		TCGA	RV	UCS	TCGA-NF-A4WU-01A	INPP5A	chr10	134351675	+	LRRC27	chr10	134161488	+
Frame-shit	ENST00000155840	ENST00000329962		TCGA	RV	UCS	TCGA-N8-A56S-01A	KCNQ1	chr11	2610084	+	B4GALNT4	chr11	372662	+
Frame-shit	ENST00000335475	ENST00000329962		TCGA	RV	UCS	TCGA-N8-A56S-01A	KCNQ1	chr11	2610084	+	B4GALNT4	chr11	372662	+
intron-3CDS	ENST00000526095	ENST00000329962		TCGA	RV	UCS	TCGA-N8-A56S-01A	KCNQ1	chr11	2610084	+	B4GALNT4	chr11	372662	+
intron-3CDS	ENST00000492698	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
intron-intron	ENST00000492698	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000252999	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
5CDS-intron	ENST00000252999	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000370692	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
intron-intron	ENST00000370692	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000370677	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
intron-intron	ENST00000370677	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VG-01A	LAMA5	chr20	60884121	-	SEC63	chr6	108214782	-
5CDS-5UTR	ENST00000265350	ENST00000541110		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000265350	ENST00000372917		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000265350	ENST00000372922		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000265350	ENST00000340840		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000265350	ENST00000354325		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000467535	ENST00000541110		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000467535	ENST00000372917		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000467535	ENST00000372922		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000467535	ENST00000340840		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5UTR-5UTR	ENST00000467535	ENST00000354325		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409312	ENST00000541110		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409312	ENST00000372917		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409312	ENST00000372922		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409312	ENST00000340840		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409312	ENST00000354325		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409060	ENST00000541110		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409060	ENST00000372917		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409060	ENST00000372922		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409060	ENST00000340840		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000409060	ENST00000354325		TCGA	RV	UCS	TCGA-N6-A4VG-01A	MED20	chr6	41884523	-	TRERF1	chr6	42330817	-
5CDS-5UTR	ENST00000355630	ENST00000215727		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000355630	ENST00000406799		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000396617	ENST00000215727		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000396617	ENST00000406799		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000402042	ENST00000215727		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000402042	ENST00000406799		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
intron-5UTR	ENST00000466278	ENST00000215727		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
intron-5UTR	ENST00000466278	ENST00000406799		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000407029	ENST00000215727		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000407029	ENST00000406799		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000402630	ENST00000215727		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
5CDS-5UTR	ENST00000402630	ENST00000406799		TCGA	RV	UCS	TCGA-N6-A4VC-01A	MKL1	chr22	40859225	-	SERPIND1	chr22	21133585	+
In-frame	ENST00000409709	ENST00000379717		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
Frame-shit	ENST00000409709	ENST00000355467		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409709	ENST00000494548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409709	ENST00000556601		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409709	ENST00000416005		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409709	ENST00000413371		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-3CDS	ENST00000409893	ENST00000379717		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-3CDS	ENST00000409893	ENST00000355467		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000409893	ENST00000494548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000409893	ENST00000556601		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000409893	ENST00000416005		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000409893	ENST00000413371		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
In-frame	ENST00000458637	ENST00000379717		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
Frame-shit	ENST00000458637	ENST00000355467		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000458637	ENST00000494548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000458637	ENST00000556601		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000458637	ENST00000416005		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000458637	ENST00000413371		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
In-frame	ENST00000409619	ENST00000379717		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
Frame-shit	ENST00000409619	ENST00000355467		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409619	ENST00000494548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409619	ENST00000556601		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409619	ENST00000416005		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
5CDS-intron	ENST00000409619	ENST00000413371		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-3CDS	ENST00000605744	ENST00000379717		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-3CDS	ENST00000605744	ENST00000355467		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000605744	ENST00000494548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000605744	ENST00000556601		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000605744	ENST00000416005		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
intron-intron	ENST00000605744	ENST00000413371		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	MYO7A	chr11	76913469	+	ZNF512	chr2	27844020	+
Frame-shit	ENST00000320201	ENST00000302349		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000320201	ENST00000541076		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000320201	ENST00000606320		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000320201	ENST00000392425		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
5CDS-intron	ENST00000320201	ENST00000539639		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000392428	ENST00000302349		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000392428	ENST00000541076		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000392428	ENST00000606320		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000392428	ENST00000392425		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
5CDS-intron	ENST00000392428	ENST00000539639		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000280562	ENST00000302349		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000280562	ENST00000541076		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000280562	ENST00000606320		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000280562	ENST00000392425		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
5CDS-intron	ENST00000280562	ENST00000539639		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000542749	ENST00000302349		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000542749	ENST00000541076		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000542749	ENST00000606320		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
Frame-shit	ENST00000542749	ENST00000392425		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
5CDS-intron	ENST00000542749	ENST00000539639		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000546049	ENST00000302349		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000546049	ENST00000541076		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000546049	ENST00000606320		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000546049	ENST00000392425		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-intron	ENST00000546049	ENST00000539639		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000451868	ENST00000302349		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000451868	ENST00000541076		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000451868	ENST00000606320		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-3CDS	ENST00000451868	ENST00000392425		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
intron-intron	ENST00000451868	ENST00000539639		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PITPNM2	chr12	123477046	-	MPHOSPH9	chr12	123687922	-
5UTR-5UTR	ENST00000427191	ENST00000395169		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000427191	ENST00000359221		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000427191	ENST00000361569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000427191	ENST00000395166		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000427191	ENST00000449047		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000427191	ENST00000395161		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000427191	ENST00000513839		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000427191	ENST00000395157		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000427191	ENST00000395160		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000395169		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000359221		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000361569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000395166		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000449047		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000395161		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000436978	ENST00000513839		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000436978	ENST00000395157		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000436978	ENST00000395160		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000395169		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000359221		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000361569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000395166		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000449047		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000395161		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000502971	ENST00000513839		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000502971	ENST00000395157		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000502971	ENST00000395160		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000395169		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000359221		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000361569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000395166		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000449047		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000395161		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000411767	ENST00000513839		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000411767	ENST00000395157		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000411767	ENST00000395160		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000395169		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000359221		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000361569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000395166		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000449047		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000395161		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-5UTR	ENST00000316707	ENST00000513839		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000316707	ENST00000395157		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
5UTR-intron	ENST00000316707	ENST00000395160		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000395169		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000359221		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000361569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000395166		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000449047		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000395161		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-5UTR	ENST00000511467	ENST00000513839		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000511467	ENST00000395157		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-intron	ENST00000511467	ENST00000395160		TCGA	RV	UCS	TCGA-NA-A4QV-01A	PTPN13	chr4	87515942	+	MAPK10	chr4	87115560	-
intron-3CDS	ENST00000474528	ENST00000258098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73316443	-
intron-5UTR	ENST00000474528	ENST00000493523		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73316443	-
Frame-shit	ENST00000272433	ENST00000258098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73316443	-
5CDS-5UTR	ENST00000272433	ENST00000493523		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73316443	-
Frame-shit	ENST00000410065	ENST00000258098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73316443	-
5CDS-5UTR	ENST00000410065	ENST00000493523		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SFXN5	chr2	73298733	-	RAB11FIP5	chr2	73316443	-
5CDS-5UTR	ENST00000254480	ENST00000446256		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5CDS-5UTR	ENST00000254480	ENST00000445061		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5CDS-3UTR	ENST00000254480	ENST00000476446		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5CDS-5UTR	ENST00000254480	ENST00000348968		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5CDS-intron	ENST00000254480	ENST00000457607		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000425518	ENST00000446256		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000425518	ENST00000445061		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5UTR-3UTR	ENST00000425518	ENST00000476446		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5UTR-5UTR	ENST00000425518	ENST00000348968		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
5UTR-intron	ENST00000425518	ENST00000457607		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCC1	chr3	47814307	-	DHX30	chr3	47846816	+
Frame-shit	ENST00000263846	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000263846	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000263846	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000263846	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5CDS-intron	ENST00000263846	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000540677	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000540677	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000540677	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000540677	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5CDS-intron	ENST00000540677	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000539008	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000539008	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000539008	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000539008	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5CDS-intron	ENST00000539008	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542836	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542836	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542836	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542836	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5CDS-intron	ENST00000542836	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542670	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542670	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542670	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000542670	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5CDS-intron	ENST00000542670	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000535826	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000535826	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000535826	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000535826	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5CDS-intron	ENST00000535826	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5UTR-3CDS	ENST00000540831	ENST00000531287		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5UTR-3CDS	ENST00000540831	ENST00000531452		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5UTR-3CDS	ENST00000540831	ENST00000530849		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5UTR-3CDS	ENST00000540831	ENST00000300650		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
5UTR-intron	ENST00000540831	ENST00000524917		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SYT7	chr11	61300461	-	RNF214	chr11	117150624	+
Frame-shit	ENST00000453386	ENST00000427718		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
Frame-shit	ENST00000453386	ENST00000330622		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
5CDS-intron	ENST00000453386	ENST00000549689		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
5UTR-3CDS	ENST00000382191	ENST00000427718		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
5UTR-3CDS	ENST00000382191	ENST00000330622		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
5UTR-intron	ENST00000382191	ENST00000549689		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
intron-3CDS	ENST00000471134	ENST00000427718		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
intron-3CDS	ENST00000471134	ENST00000330622		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
intron-intron	ENST00000471134	ENST00000549689		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
Frame-shit	ENST00000342294	ENST00000427718		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
Frame-shit	ENST00000342294	ENST00000330622		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
5CDS-intron	ENST00000342294	ENST00000549689		TCGA	RV	UCS	TCGA-N7-A4Y5-01A	TRA2B	chr3	185655613	-	FBXO21	chr12	117593753	-
Frame-shit	ENST00000355621	ENST00000358303		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000355621	ENST00000360708		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000355621	ENST00000311873		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000355621	ENST00000481503		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000473814	ENST00000358303		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000473814	ENST00000360708		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000473814	ENST00000311873		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000473814	ENST00000481503		TCGA	RV	UCS	TCGA-N8-A4PL-01A	UBE2H	chr7	129519408	-	ZC3HC1	chr7	129688984	-
Frame-shit	ENST00000540274	ENST00000343459		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
5CDS-5UTR	ENST00000540274	ENST00000429371		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
In-frame	ENST00000377307	ENST00000343459		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
5CDS-5UTR	ENST00000377307	ENST00000429371		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
In-frame	ENST00000276826	ENST00000343459		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
5CDS-5UTR	ENST00000276826	ENST00000429371		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
intron-3CDS	ENST00000528810	ENST00000343459		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
intron-5UTR	ENST00000528810	ENST00000429371		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ARHGAP39	chr8	145830920	-	ZNF34	chr8	146003910	-
Frame-shit	ENST00000458711	ENST00000356711		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000458711	ENST00000251041		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000458711	ENST00000357550		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000458711	ENST00000457511		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
5CDS-intron	ENST00000458711	ENST00000467639		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
In-frame	ENST00000424185	ENST00000356711		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
In-frame	ENST00000424185	ENST00000251041		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
In-frame	ENST00000424185	ENST00000357550		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
In-frame	ENST00000424185	ENST00000457511		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
5CDS-intron	ENST00000424185	ENST00000467639		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000397191	ENST00000356711		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000397191	ENST00000251041		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000397191	ENST00000357550		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
Frame-shit	ENST00000397191	ENST00000457511		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
5CDS-intron	ENST00000397191	ENST00000467639		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
3UTR-3CDS	ENST00000470164	ENST00000356711		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
3UTR-3CDS	ENST00000470164	ENST00000251041		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
3UTR-3CDS	ENST00000470164	ENST00000357550		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
3UTR-3CDS	ENST00000470164	ENST00000457511		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
3UTR-intron	ENST00000470164	ENST00000467639		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
intron-3CDS	ENST00000309957	ENST00000356711		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
intron-3CDS	ENST00000309957	ENST00000251041		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
intron-3CDS	ENST00000309957	ENST00000357550		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
intron-3CDS	ENST00000309957	ENST00000457511		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
intron-intron	ENST00000309957	ENST00000467639		TCGA	RV	UCS	TCGA-N5-A4RD-01A	CARKD	chr13	111267994	+	MYO16	chr13	109610036	+
In-frame	ENST00000583610	ENST00000356136		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000583610	ENST00000528420		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000583610	ENST00000533454		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000583610	ENST00000531818		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000583610	ENST00000532130		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000583610	ENST00000539288		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000583610	ENST00000525872		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000583610	ENST00000538870		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000394294	ENST00000356136		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000394294	ENST00000528420		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000394294	ENST00000533454		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000394294	ENST00000531818		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000394294	ENST00000532130		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000394294	ENST00000539288		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000394294	ENST00000525872		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000394294	ENST00000538870		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000264658	ENST00000356136		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000264658	ENST00000528420		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000264658	ENST00000533454		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000264658	ENST00000531818		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000264658	ENST00000532130		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
In-frame	ENST00000264658	ENST00000539288		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
5CDS-intron	ENST00000264658	ENST00000525872		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
5CDS-5UTR	ENST00000264658	ENST00000538870		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000577399	ENST00000356136		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000577399	ENST00000528420		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000577399	ENST00000533454		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000577399	ENST00000531818		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000577399	ENST00000532130		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-3CDS	ENST00000577399	ENST00000539288		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-intron	ENST00000577399	ENST00000525872		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000577399	ENST00000538870		TCGA	RV	UCS	TCGA-NA-A5I1-01A	FBXL20	chr17	37557614	-	UVRAG	chr11	75826968	+
intron-5UTR	ENST00000311172	ENST00000279249		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
intron-5UTR	ENST00000311172	ENST00000533419		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
intron-5UTR	ENST00000311172	ENST00000544348		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000409314	ENST00000279249		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000409314	ENST00000533419		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000409314	ENST00000544348		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000409418	ENST00000279249		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000409418	ENST00000533419		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5CDS-5UTR	ENST00000409418	ENST00000544348		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5UTR-5UTR	ENST00000458644	ENST00000279249		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5UTR-5UTR	ENST00000458644	ENST00000533419		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5UTR-5UTR	ENST00000458644	ENST00000544348		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5UTR-5UTR	ENST00000409853	ENST00000279249		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5UTR-5UTR	ENST00000409853	ENST00000533419		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
5UTR-5UTR	ENST00000409853	ENST00000544348		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
intron-5UTR	ENST00000409263	ENST00000279249		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
intron-5UTR	ENST00000409263	ENST00000533419		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
intron-5UTR	ENST00000409263	ENST00000544348		TCGA	RV	UCS	TCGA-N5-A4RA-01A	FCHSD2	chr11	72851076	-	CDC42EP2	chr11	65088015	+
intron-3CDS	ENST00000377093	ENST00000455446		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-3CDS	ENST00000377093	ENST00000397356		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-5UTR	ENST00000377093	ENST00000397353		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-intron	ENST00000377093	ENST00000567398		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-5UTR	ENST00000377093	ENST00000566709		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
In-frame	ENST00000263934	ENST00000455446		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
Frame-shit	ENST00000263934	ENST00000397356		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-5UTR	ENST00000263934	ENST00000397353		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-intron	ENST00000263934	ENST00000567398		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-5UTR	ENST00000263934	ENST00000566709		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
In-frame	ENST00000377086	ENST00000455446		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
Frame-shit	ENST00000377086	ENST00000397356		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-5UTR	ENST00000377086	ENST00000397353		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-intron	ENST00000377086	ENST00000567398		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-5UTR	ENST00000377086	ENST00000566709		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-3CDS	ENST00000377083	ENST00000455446		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-3CDS	ENST00000377083	ENST00000397356		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-5UTR	ENST00000377083	ENST00000397353		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-intron	ENST00000377083	ENST00000567398		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-5UTR	ENST00000377083	ENST00000566709		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
In-frame	ENST00000377081	ENST00000455446		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
Frame-shit	ENST00000377081	ENST00000397356		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-5UTR	ENST00000377081	ENST00000397353		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-intron	ENST00000377081	ENST00000567398		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
5CDS-5UTR	ENST00000377081	ENST00000566709		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-3CDS	ENST00000465635	ENST00000455446		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-3CDS	ENST00000465635	ENST00000397356		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-5UTR	ENST00000465635	ENST00000397353		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-intron	ENST00000465635	ENST00000567398		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
intron-5UTR	ENST00000465635	ENST00000566709		TCGA	RV	UCS	TCGA-NA-A4R1-01A	KIF1B	chr1	10428596	+	HAGH	chr16	1873038	-
Frame-shit	ENST00000505658	ENST00000323776		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000505658	ENST00000419930		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000505658	ENST00000436259		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000505658	ENST00000468821		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
Frame-shit	ENST00000393227	ENST00000323776		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000393227	ENST00000419930		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000393227	ENST00000436259		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000393227	ENST00000468821		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
Frame-shit	ENST00000311571	ENST00000323776		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000311571	ENST00000419930		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000311571	ENST00000436259		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000311571	ENST00000468821		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
Frame-shit	ENST00000240304	ENST00000323776		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000240304	ENST00000419930		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000240304	ENST00000436259		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5CDS-intron	ENST00000240304	ENST00000468821		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5UTR-3CDS	ENST00000544170	ENST00000323776		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5UTR-intron	ENST00000544170	ENST00000419930		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5UTR-intron	ENST00000544170	ENST00000436259		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
5UTR-intron	ENST00000544170	ENST00000468821		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
intron-3CDS	ENST00000503798	ENST00000323776		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
intron-intron	ENST00000503798	ENST00000419930		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
intron-intron	ENST00000503798	ENST00000436259		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
intron-intron	ENST00000503798	ENST00000468821		TCGA	RV	UCS	TCGA-N8-A4PM-01A	LUC7L3	chr17	48797192	+	MYCBPAP	chr17	48593931	+
Frame-shit	ENST00000383737	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000395734	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000426837	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000360240	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000439356	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000264724	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000420772	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000441748	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
intron-3CDS	ENST00000462206	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000434267	ENST00000434006		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MAP4	chr3	48019355	-	SPINK8	chr3	48351436	-
Frame-shit	ENST00000441750	ENST00000295083		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
Frame-shit	ENST00000441750	ENST00000441908		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
5CDS-3UTR	ENST00000441750	ENST00000476787		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
5CDS-3UTR	ENST00000441750	ENST00000402361		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
Frame-shit	ENST00000281513	ENST00000295083		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
Frame-shit	ENST00000281513	ENST00000441908		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
5CDS-3UTR	ENST00000281513	ENST00000476787		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
5CDS-3UTR	ENST00000281513	ENST00000402361		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	NBAS	chr2	15326866	-	PQLC3	chr2	11300592	+
Frame-shit	ENST00000341724	ENST00000359930		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000341724	ENST00000484875		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000341724	ENST00000361612		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000341724	ENST00000467815		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
5CDS-intron	ENST00000341724	ENST00000478766		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000372004	ENST00000359930		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000372004	ENST00000484875		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000372004	ENST00000361612		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000372004	ENST00000467815		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
5CDS-intron	ENST00000372004	ENST00000478766		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371998	ENST00000359930		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371998	ENST00000484875		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371998	ENST00000361612		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371998	ENST00000467815		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
5CDS-intron	ENST00000371998	ENST00000478766		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371997	ENST00000359930		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371997	ENST00000484875		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371997	ENST00000361612		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000371997	ENST00000467815		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
5CDS-intron	ENST00000371997	ENST00000478766		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
intron-3CDS	ENST00000497292	ENST00000359930		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
intron-3CDS	ENST00000497292	ENST00000484875		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
intron-3CDS	ENST00000497292	ENST00000361612		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
intron-3CDS	ENST00000497292	ENST00000467815		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
intron-intron	ENST00000497292	ENST00000478766		TCGA	RV	UCS	TCGA-N6-A4VE-01A	NCOA3	chr20	46276110	+	SULF2	chr20	46331414	-
Frame-shit	ENST00000377559	ENST00000354179		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377559	ENST00000439151		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377559	ENST00000347982		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377559	ENST00000361032		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
5CDS-intron	ENST00000377559	ENST00000511258		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000265459	ENST00000354179		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000265459	ENST00000439151		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000265459	ENST00000347982		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000265459	ENST00000361032		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
5CDS-intron	ENST00000265459	ENST00000511258		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000301894	ENST00000354179		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000301894	ENST00000439151		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000301894	ENST00000347982		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000301894	ENST00000361032		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
5CDS-intron	ENST00000301894	ENST00000511258		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377551	ENST00000354179		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377551	ENST00000439151		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377551	ENST00000347982		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000377551	ENST00000361032		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
5CDS-intron	ENST00000377551	ENST00000511258		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000409571	ENST00000354179		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000409571	ENST00000439151		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000409571	ENST00000347982		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
Frame-shit	ENST00000409571	ENST00000361032		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
5CDS-intron	ENST00000409571	ENST00000511258		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
intron-3CDS	ENST00000496291	ENST00000354179		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
intron-3CDS	ENST00000496291	ENST00000439151		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
intron-3CDS	ENST00000496291	ENST00000347982		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
intron-3CDS	ENST00000496291	ENST00000361032		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
intron-intron	ENST00000496291	ENST00000511258		TCGA	RV	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176665238	+
In-frame	ENST00000305626	ENST00000296543		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
In-frame	ENST00000305626	ENST00000398947		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
5CDS-intron	ENST00000305626	ENST00000480277		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
5CDS-intron	ENST00000305626	ENST00000515576		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
intron-3CDS	ENST00000507271	ENST00000296543		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
intron-3CDS	ENST00000507271	ENST00000398947		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
intron-intron	ENST00000507271	ENST00000480277		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
intron-intron	ENST00000507271	ENST00000515576		TCGA	RV	UCS	TCGA-N8-A4PL-01A	RAB33B	chr4	140375598	+	NAA15	chr4	140255328	+
intron-3CDS	ENST00000487990	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000487990	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000487990	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000487990	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000487990	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000487990	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000487990	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000487990	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000399272	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000399272	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000399272	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000399272	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000399272	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000399272	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000399272	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000399272	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000489903	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000489903	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000489903	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000489903	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000489903	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000489903	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000489903	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000489903	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000313806	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000313806	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000313806	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000313806	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000313806	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000313806	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
5CDS-intron	ENST00000313806	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
5CDS-intron	ENST00000313806	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000443408	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000443408	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000443408	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000443408	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000443408	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000443408	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000443408	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000443408	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000482533	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000482533	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000482533	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000482533	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000482533	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000482533	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000482533	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000482533	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000481448	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000481448	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000481448	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000481448	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000481448	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000481448	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000481448	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000481448	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381132	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381132	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381132	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381132	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381132	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381132	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000381132	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000381132	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381135	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381135	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381135	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381135	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381135	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000381135	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000381135	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000381135	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000492600	ENST00000344691		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000492600	ENST00000325074		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000492600	ENST00000437180		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000492600	ENST00000300305		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000492600	ENST00000399240		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-3CDS	ENST00000492600	ENST00000486278		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000492600	ENST00000494829		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
intron-intron	ENST00000492600	ENST00000358356		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RCAN1	chr21	35987059	-	RUNX1	chr21	36253010	-
In-frame	ENST00000336451	ENST00000367255		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
In-frame	ENST00000336451	ENST00000356820		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
In-frame	ENST00000336451	ENST00000423061		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
In-frame	ENST00000336451	ENST00000448038		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
In-frame	ENST00000336451	ENST00000341594		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
In-frame	ENST00000336451	ENST00000265368		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000367253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000367248		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000413186		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000466159		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000539504		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000347037		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000354674		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000336451	ENST00000495090		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
Frame-shit	ENST00000367303	ENST00000367255		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
Frame-shit	ENST00000367303	ENST00000356820		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
Frame-shit	ENST00000367303	ENST00000423061		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
Frame-shit	ENST00000367303	ENST00000448038		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
Frame-shit	ENST00000367303	ENST00000341594		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
Frame-shit	ENST00000367303	ENST00000265368		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000367253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000367248		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000413186		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000466159		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000539504		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000347037		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000354674		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
5CDS-intron	ENST00000367303	ENST00000495090		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-3CDS	ENST00000491268	ENST00000367255		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-3CDS	ENST00000491268	ENST00000356820		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-3CDS	ENST00000491268	ENST00000423061		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-3CDS	ENST00000491268	ENST00000448038		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-3CDS	ENST00000491268	ENST00000341594		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-3CDS	ENST00000491268	ENST00000265368		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000367253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000367248		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000413186		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000466159		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000539504		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000347037		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000354674		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
intron-intron	ENST00000491268	ENST00000495090		TCGA	RV	UCS	TCGA-N5-A4RD-01A	RMND1	chr6	151738414	-	SYNE1	chr6	152632008	-
In-frame	ENST00000355086	ENST00000406775		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
In-frame	ENST00000355086	ENST00000342771		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-intron	ENST00000355086	ENST00000403018		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-3UTR	ENST00000355086	ENST00000489774		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
In-frame	ENST00000357825	ENST00000406775		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
In-frame	ENST00000357825	ENST00000342771		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-intron	ENST00000357825	ENST00000403018		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-3UTR	ENST00000357825	ENST00000489774		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
In-frame	ENST00000543397	ENST00000406775		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
In-frame	ENST00000543397	ENST00000342771		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-intron	ENST00000543397	ENST00000403018		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-3UTR	ENST00000543397	ENST00000489774		TCGA	RV	UCS	TCGA-N5-A4RO-01A	SRGAP1	chr12	64410792	+	AUTS2	chr7	70163555	+
5CDS-intron	ENST00000322652	ENST00000583688		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	SUZ12	chr17	30267505	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000322652	ENST00000330889		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	SUZ12	chr17	30267505	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000322652	ENST00000580525		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	SUZ12	chr17	30267505	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000580398	ENST00000583688		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	SUZ12	chr17	30267505	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000580398	ENST00000330889		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	SUZ12	chr17	30267505	+	ADAP2	chr17	29271925	+
5CDS-intron	ENST00000580398	ENST00000580525		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	SUZ12	chr17	30267505	+	ADAP2	chr17	29271925	+
In-frame	ENST00000344949	ENST00000429523		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
5CDS-3UTR	ENST00000344949	ENST00000489487		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
In-frame	ENST00000394144	ENST00000429523		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
5CDS-3UTR	ENST00000394144	ENST00000489487		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
3UTR-3CDS	ENST00000486274	ENST00000429523		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
3UTR-3UTR	ENST00000486274	ENST00000489487		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
In-frame	ENST00000475134	ENST00000429523		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
5CDS-3UTR	ENST00000475134	ENST00000489487		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TBC1D23	chr3	100009545	+	TMEM30C	chr3	99908785	+
5UTR-3CDS	ENST00000308580	ENST00000261866		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
5UTR-3CDS	ENST00000308580	ENST00000535302		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
5UTR-3CDS	ENST00000308580	ENST00000427534		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
5UTR-3CDS	ENST00000308580	ENST00000558319		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
5UTR-5UTR	ENST00000308580	ENST00000558253		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
5UTR-intron	ENST00000308580	ENST00000559193		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000544199	ENST00000261866		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000544199	ENST00000535302		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000544199	ENST00000427534		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000544199	ENST00000558319		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-5UTR	ENST00000544199	ENST00000558253		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-intron	ENST00000544199	ENST00000559193		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000561136	ENST00000261866		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000561136	ENST00000535302		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000561136	ENST00000427534		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-3CDS	ENST00000561136	ENST00000558319		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-5UTR	ENST00000561136	ENST00000558253		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
intron-intron	ENST00000561136	ENST00000559193		TCGA	RV	UCS	TCGA-N5-A4RN-01A	TMOD3	chr15	52122033	+	SPG11	chr15	44878048	-
In-frame	ENST00000291535	ENST00000359086		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000291535	ENST00000448586		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000291535	ENST00000457919		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000291535	ENST00000454649		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000291535	ENST00000383539		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000291535	ENST00000429290		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
intron-3CDS	ENST00000450356	ENST00000359086		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
intron-intron	ENST00000450356	ENST00000448586		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
intron-intron	ENST00000450356	ENST00000457919		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
intron-intron	ENST00000450356	ENST00000454649		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
intron-intron	ENST00000450356	ENST00000383539		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
intron-intron	ENST00000450356	ENST00000429290		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
In-frame	ENST00000319294	ENST00000359086		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000319294	ENST00000448586		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000319294	ENST00000457919		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000319294	ENST00000454649		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000319294	ENST00000383539		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000319294	ENST00000429290		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
In-frame	ENST00000398367	ENST00000359086		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000398367	ENST00000448586		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000398367	ENST00000457919		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000398367	ENST00000454649		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000398367	ENST00000383539		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
5CDS-intron	ENST00000398367	ENST00000429290		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UBASH3A	chr21	43857690	+	SFTA2	chr6	30899572	-
In-frame	ENST00000207549	ENST00000586717		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
In-frame	ENST00000207549	ENST00000319129		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
In-frame	ENST00000207549	ENST00000389570		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
5CDS-intron	ENST00000207549	ENST00000586631		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
5CDS-intron	ENST00000207549	ENST00000588478		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
In-frame	ENST00000412096	ENST00000586717		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
In-frame	ENST00000412096	ENST00000319129		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
In-frame	ENST00000412096	ENST00000389570		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
5CDS-intron	ENST00000412096	ENST00000586631		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
5CDS-intron	ENST00000412096	ENST00000588478		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
intron-3CDS	ENST00000587504	ENST00000586717		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
intron-3CDS	ENST00000587504	ENST00000319129		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
intron-3CDS	ENST00000587504	ENST00000389570		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
intron-intron	ENST00000587504	ENST00000586631		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
intron-intron	ENST00000587504	ENST00000588478		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	UNC13D	chr17	73826109	-	FBF1	chr17	73914350	-
Frame-shit	ENST00000510377	ENST00000304385		TCGA	RV	UCS	TCGA-N5-A59E-01A	USP38	chr4	144109114	+	TMEM154	chr4	153549713	-
5CDS-intron	ENST00000510377	ENST00000504064		TCGA	RV	UCS	TCGA-N5-A59E-01A	USP38	chr4	144109114	+	TMEM154	chr4	153549713	-
Frame-shit	ENST00000307017	ENST00000304385		TCGA	RV	UCS	TCGA-N5-A59E-01A	USP38	chr4	144109114	+	TMEM154	chr4	153549713	-
5CDS-intron	ENST00000307017	ENST00000504064		TCGA	RV	UCS	TCGA-N5-A59E-01A	USP38	chr4	144109114	+	TMEM154	chr4	153549713	-
5UTR-3CDS	ENST00000317025	ENST00000339382		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-intron	ENST00000317025	ENST00000475541		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-3CDS	ENST00000433384	ENST00000339382		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-intron	ENST00000433384	ENST00000475541		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-3CDS	ENST00000527502	ENST00000339382		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-intron	ENST00000527502	ENST00000475541		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-3CDS	ENST00000316985	ENST00000339382		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
5UTR-intron	ENST00000316985	ENST00000475541		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
intron-3CDS	ENST00000525081	ENST00000339382		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
intron-intron	ENST00000525081	ENST00000475541		TCGA	RV	UCS	TCGA-N5-A4RO-01A	WHSC1L1	chr8	38239317	-	PURG	chr8	30854213	-
Frame-shit	ENST00000427569	ENST00000306071		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
Frame-shit	ENST00000427569	ENST00000536404		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
5CDS-intron	ENST00000427569	ENST00000576360		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
5CDS-intron	ENST00000427569	ENST00000575379		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
5UTR-3CDS	ENST00000416949	ENST00000306071		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
5UTR-3CDS	ENST00000416949	ENST00000536404		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
5UTR-intron	ENST00000416949	ENST00000576360		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
5UTR-intron	ENST00000416949	ENST00000575379		TCGA	RV	UCS	TCGA-N6-A4VF-01A	AARSD1	chr17	41116123	-	CHRNB1	chr17	7357616	+
3UTR-3CDS	ENST00000526231	ENST00000349769		TCGA	RV	UCS	TCGA-ND-A4WF-01A	ADCK5	chr8	145608431	+	CPSF1	chr8	145619375	-
3UTR-5UTR	ENST00000526231	ENST00000531727		TCGA	RV	UCS	TCGA-ND-A4WF-01A	ADCK5	chr8	145608431	+	CPSF1	chr8	145619375	-
Frame-shit	ENST00000308860	ENST00000349769		TCGA	RV	UCS	TCGA-ND-A4WF-01A	ADCK5	chr8	145608431	+	CPSF1	chr8	145619375	-
5CDS-5UTR	ENST00000308860	ENST00000531727		TCGA	RV	UCS	TCGA-ND-A4WF-01A	ADCK5	chr8	145608431	+	CPSF1	chr8	145619375	-
Frame-shit	ENST00000532190	ENST00000349769		TCGA	RV	UCS	TCGA-ND-A4WF-01A	ADCK5	chr8	145608431	+	CPSF1	chr8	145619375	-
5CDS-5UTR	ENST00000532190	ENST00000531727		TCGA	RV	UCS	TCGA-ND-A4WF-01A	ADCK5	chr8	145608431	+	CPSF1	chr8	145619375	-
intron-3CDS	ENST00000511642	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000511642	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000511642	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000511642	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000415497	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000415497	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000415497	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000415497	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000372988	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000372988	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000372988	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000372988	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000510503	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000510503	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000510503	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000510503	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000511686	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-3CDS	ENST00000511686	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000511686	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5UTR-intron	ENST00000511686	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000372991	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000372991	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000372991	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000372991	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000372987	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000372987	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000372987	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000372987	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000414200	ENST00000418342		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-3CDS	ENST00000414200	ENST00000302291		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000414200	ENST00000314174		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
intron-intron	ENST00000414200	ENST00000374623		TCGA	RV	UCS	TCGA-N8-A4PI-01A	CCND3	chr6	42016239	-	LUZP1	chr1	23415546	-
5CDS-intron	ENST00000371817	ENST00000354185		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL5A1	chr9	137736686	+	DDX21	chr10	70723858	+
intron-intron	ENST00000464187	ENST00000354185		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL5A1	chr9	137736686	+	DDX21	chr10	70723858	+
5UTR-3CDS	ENST00000473039	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
5UTR-3CDS	ENST00000473039	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
5UTR-intron	ENST00000473039	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
Frame-shit	ENST00000373624	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
Frame-shit	ENST00000373624	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
5CDS-intron	ENST00000373624	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-3CDS	ENST00000542603	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-3CDS	ENST00000542603	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-intron	ENST00000542603	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-3CDS	ENST00000394219	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-3CDS	ENST00000394219	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-intron	ENST00000394219	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
Frame-shit	ENST00000373620	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
Frame-shit	ENST00000373620	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
5CDS-intron	ENST00000373620	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-3CDS	ENST00000394215	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-3CDS	ENST00000394215	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
intron-intron	ENST00000394215	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
Frame-shit	ENST00000373618	ENST00000360835		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
Frame-shit	ENST00000373618	ENST00000290460		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
5CDS-intron	ENST00000373618	ENST00000470433		TCGA	RV	UCS	TCGA-N5-A4RD-01A	DENND1A	chr9	126554866	-	SCUBE1	chr22	43735241	-
5UTR-3CDS	ENST00000395169	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000395169	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395169	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395169	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395169	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395169	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000359221	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000359221	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000359221	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000359221	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000359221	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000359221	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000361569	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000361569	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000361569	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000361569	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000361569	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000361569	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000395166	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000395166	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395166	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395166	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395166	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395166	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000449047	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000449047	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000449047	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000449047	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000449047	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000449047	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000395161	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000395161	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395161	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395161	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395161	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000395161	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000513839	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-3CDS	ENST00000513839	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000513839	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000513839	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000513839	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
5UTR-intron	ENST00000513839	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-3CDS	ENST00000395157	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-3CDS	ENST00000395157	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395157	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395157	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395157	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395157	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-3CDS	ENST00000395160	ENST00000427191		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-3CDS	ENST00000395160	ENST00000436978		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395160	ENST00000502971		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395160	ENST00000411767		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395160	ENST00000316707		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
intron-intron	ENST00000395160	ENST00000511467		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MAPK10	chr4	87275683	-	PTPN13	chr4	87679413	+
Frame-shit	ENST00000598205	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000598205	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000598205	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000598205	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000376970	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000376970	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000376970	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000376970	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000425460	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000425460	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000425460	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000425460	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000440075	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000440075	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000440075	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000440075	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000601313	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000601313	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000601313	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000601313	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000262269	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000262269	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000262269	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000262269	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000596571	ENST00000535798		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000596571	ENST00000404922		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000596571	ENST00000295760		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
Frame-shit	ENST00000596571	ENST00000492059		TCGA	RV	UCS	TCGA-N8-A4PO-01A	MYH14	chr19	50805126	+	FBLN2	chr3	13649562	+
In-frame	ENST00000390006	ENST00000264651		TCGA	RV	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80422306	+	KRT24	chr17	38858185	-
In-frame	ENST00000309794	ENST00000264651		TCGA	RV	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80422306	+	KRT24	chr17	38858185	-
intron-3CDS	ENST00000345415	ENST00000264651		TCGA	RV	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80422306	+	KRT24	chr17	38858185	-
In-frame	ENST00000457415	ENST00000264651		TCGA	RV	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80422306	+	KRT24	chr17	38858185	-
5UTR-3CDS	ENST00000412079	ENST00000264651		TCGA	RV	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80422306	+	KRT24	chr17	38858185	-
3UTR-3CDS	ENST00000581743	ENST00000264651		TCGA	RV	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80422306	+	KRT24	chr17	38858185	-
In-frame	ENST00000254508	ENST00000251472		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210	chr3	13418956	-	MAST1	chr19	12962748	+
In-frame	ENST00000254508	ENST00000591495		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210	chr3	13418956	-	MAST1	chr19	12962748	+
intron-3CDS	ENST00000485755	ENST00000251472		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210	chr3	13418956	-	MAST1	chr19	12962748	+
intron-3CDS	ENST00000485755	ENST00000591495		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210	chr3	13418956	-	MAST1	chr19	12962748	+
In-frame	ENST00000264833	ENST00000321949		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
In-frame	ENST00000264833	ENST00000338797		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
In-frame	ENST00000264833	ENST00000594658		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
In-frame	ENST00000264833	ENST00000601916		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000590841	ENST00000321949		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000590841	ENST00000338797		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000590841	ENST00000594658		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000590841	ENST00000601916		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	OLFM2	chr19	10046980	-	CRTC1	chr19	18853720	+
5CDS-3UTR	ENST00000337959	ENST00000310358		TCGA	RV	UCS	TCGA-N5-A4RD-01A	PACSIN2	chr22	43308027	-	SPON1	chr11	14264878	+
5CDS-3UTR	ENST00000263246	ENST00000310358		TCGA	RV	UCS	TCGA-N5-A4RD-01A	PACSIN2	chr22	43308027	-	SPON1	chr11	14264878	+
5CDS-3UTR	ENST00000407585	ENST00000310358		TCGA	RV	UCS	TCGA-N5-A4RD-01A	PACSIN2	chr22	43308027	-	SPON1	chr11	14264878	+
5CDS-3UTR	ENST00000403744	ENST00000310358		TCGA	RV	UCS	TCGA-N5-A4RD-01A	PACSIN2	chr22	43308027	-	SPON1	chr11	14264878	+
5CDS-3UTR	ENST00000402229	ENST00000310358		TCGA	RV	UCS	TCGA-N5-A4RD-01A	PACSIN2	chr22	43308027	-	SPON1	chr11	14264878	+
5UTR-3CDS	ENST00000599470	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599470	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599470	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599470	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599470	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599470	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-3CDS	ENST00000321944	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000321944	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000321944	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000321944	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000321944	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000321944	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-3CDS	ENST00000358301	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000358301	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000358301	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000358301	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000358301	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000358301	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
3UTR-3CDS	ENST00000597766	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
3UTR-intron	ENST00000597766	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
3UTR-intron	ENST00000597766	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
3UTR-intron	ENST00000597766	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
3UTR-intron	ENST00000597766	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
3UTR-intron	ENST00000597766	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-3CDS	ENST00000593690	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000593690	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000593690	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000593690	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000593690	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000593690	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-3CDS	ENST00000599386	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599386	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599386	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599386	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599386	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5UTR-intron	ENST00000599386	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-3CDS	ENST00000435673	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000435673	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000435673	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000435673	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000435673	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000435673	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-3CDS	ENST00000360442	ENST00000318842		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000360442	ENST00000338898		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000360442	ENST00000339363		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000360442	ENST00000309513		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000360442	ENST00000342811		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
intron-intron	ENST00000360442	ENST00000378505		TCGA	RV	UCS	TCGA-N8-A4PN-01A	PAK4	chr19	39616559	+	RPGR	chrX	38150737	-
5CDS-intron	ENST00000374820	ENST00000593786		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000374820	ENST00000374796		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000374820	ENST00000359003		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000452740	ENST00000593786		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000452740	ENST00000374796		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
5CDS-intron	ENST00000452740	ENST00000359003		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000480175	ENST00000593786		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000480175	ENST00000374796		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
intron-intron	ENST00000480175	ENST00000359003		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PIGU	chr20	33162908	-	NCOA6	chr20	33315211	-
In-frame	ENST00000202556	ENST00000265707		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
In-frame	ENST00000202556	ENST00000379866		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
In-frame	ENST00000202556	ENST00000520772		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
5CDS-5UTR	ENST00000202556	ENST00000541111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
5CDS-intron	ENST00000202556	ENST00000523755		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000423488	ENST00000265707		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000423488	ENST00000379866		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000423488	ENST00000520772		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-5UTR	ENST00000423488	ENST00000541111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-intron	ENST00000423488	ENST00000523755		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000555391	ENST00000265707		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000555391	ENST00000379866		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-3CDS	ENST00000555391	ENST00000520772		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-5UTR	ENST00000555391	ENST00000541111		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-intron	ENST00000555391	ENST00000523755		TCGA	RV	UCS	TCGA-NA-A4QY-01A	PPP1R13B	chr14	104313636	-	ADAM18	chr8	39463826	+
intron-intron	ENST00000374761	ENST00000400301		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374761	ENST00000308271		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374761	ENST00000374732		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374761	ENST00000529637		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374761	ENST00000479177		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374761	ENST00000421625		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-intron	ENST00000290101	ENST00000400301		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-intron	ENST00000290101	ENST00000308271		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-intron	ENST00000290101	ENST00000374732		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-intron	ENST00000290101	ENST00000529637		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-intron	ENST00000290101	ENST00000479177		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-intron	ENST00000290101	ENST00000421625		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374763	ENST00000400301		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374763	ENST00000308271		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374763	ENST00000374732		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374763	ENST00000529637		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374763	ENST00000479177		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
intron-intron	ENST00000374763	ENST00000421625		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374765	ENST00000400301		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374765	ENST00000308271		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374765	ENST00000374732		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374765	ENST00000529637		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374765	ENST00000479177		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374765	ENST00000421625		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000542643	ENST00000400301		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000542643	ENST00000308271		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000542643	ENST00000374732		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000542643	ENST00000529637		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000542643	ENST00000479177		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000542643	ENST00000421625		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374757	ENST00000400301		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374757	ENST00000308271		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374757	ENST00000374732		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374757	ENST00000529637		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374757	ENST00000479177		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5UTR-intron	ENST00000374757	ENST00000421625		TCGA	RV	UCS	TCGA-N9-A4Q3-01A	RAP1GAP	chr1	21976254	-	USP48	chr1	22021714	-
5CDS-5UTR	ENST00000381750	ENST00000368765		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RCL1	chr9	4841357	+	SMCP	chr1	152856879	+
5CDS-5UTR	ENST00000381730	ENST00000368765		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RCL1	chr9	4841357	+	SMCP	chr1	152856879	+
5CDS-5UTR	ENST00000381728	ENST00000368765		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RCL1	chr9	4841357	+	SMCP	chr1	152856879	+
5CDS-5UTR	ENST00000448872	ENST00000368765		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RCL1	chr9	4841357	+	SMCP	chr1	152856879	+
intron-5UTR	ENST00000381732	ENST00000368765		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RCL1	chr9	4841357	+	SMCP	chr1	152856879	+
intron-5UTR	ENST00000445485	ENST00000368765		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RCL1	chr9	4841357	+	SMCP	chr1	152856879	+
Frame-shit	ENST00000216160	ENST00000382097		TCGA	RV	UCS	TCGA-NA-A4QY-01A	TAB1	chr22	39824188	+	C22orf42	chr22	32550305	-
5CDS-intron	ENST00000216160	ENST00000490640		TCGA	RV	UCS	TCGA-NA-A4QY-01A	TAB1	chr22	39824188	+	C22orf42	chr22	32550305	-
Frame-shit	ENST00000331454	ENST00000382097		TCGA	RV	UCS	TCGA-NA-A4QY-01A	TAB1	chr22	39824188	+	C22orf42	chr22	32550305	-
5CDS-intron	ENST00000331454	ENST00000490640		TCGA	RV	UCS	TCGA-NA-A4QY-01A	TAB1	chr22	39824188	+	C22orf42	chr22	32550305	-
intron-3CDS	ENST00000488859	ENST00000382097		TCGA	RV	UCS	TCGA-NA-A4QY-01A	TAB1	chr22	39824188	+	C22orf42	chr22	32550305	-
intron-intron	ENST00000488859	ENST00000490640		TCGA	RV	UCS	TCGA-NA-A4QY-01A	TAB1	chr22	39824188	+	C22orf42	chr22	32550305	-
5CDS-5UTR	ENST00000321196	ENST00000340600		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000321196	ENST00000549206		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000321196	ENST00000536696		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000321196	ENST00000549122		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000321196	ENST00000548537		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000321196	ENST00000551556		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000548305	ENST00000340600		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000548305	ENST00000549206		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000548305	ENST00000536696		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000548305	ENST00000549122		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000548305	ENST00000548537		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
5CDS-5UTR	ENST00000548305	ENST00000551556		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000549919	ENST00000340600		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000549919	ENST00000549206		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000549919	ENST00000536696		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000549919	ENST00000549122		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000549919	ENST00000548537		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
intron-5UTR	ENST00000549919	ENST00000551556		TCGA	RV	UCS	TCGA-N5-A4RO-01A	TMTC2	chr12	83081448	+	SOCS2	chr12	93966461	+
In-frame	ENST00000427277	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000427277	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000427277	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000297954	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000297954	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000297954	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000395475	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000395475	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000395475	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000356055	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000356055	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
3UTR-3CDS	ENST00000356055	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000349097	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000349097	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000349097	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000395477	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
In-frame	ENST00000395477	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
Frame-shit	ENST00000395477	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375587		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375579		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
intron-3CDS	ENST00000471076	ENST00000375576		TCGA	RV	UCS	TCGA-NF-A4WU-01A	WNK2	chr9	96070866	+	CENPP	chr9	95373596	+
5CDS-5UTR	ENST00000601935	ENST00000442725		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000601935	ENST00000252595		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000601935	ENST00000598424		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-intron	ENST00000601935	ENST00000598848		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000600313	ENST00000442725		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000600313	ENST00000252595		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000600313	ENST00000598424		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-intron	ENST00000600313	ENST00000598848		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000596211	ENST00000442725		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000596211	ENST00000252595		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000596211	ENST00000598424		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-intron	ENST00000596211	ENST00000598848		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000359788	ENST00000442725		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000359788	ENST00000252595		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000359788	ENST00000598424		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-intron	ENST00000359788	ENST00000598848		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000601010	ENST00000442725		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000601010	ENST00000252595		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000601010	ENST00000598424		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-intron	ENST00000601010	ENST00000598848		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000599168	ENST00000442725		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000599168	ENST00000252595		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-5UTR	ENST00000599168	ENST00000598424		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
5CDS-intron	ENST00000599168	ENST00000598848		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ZNF675	chr19	23869833	-	SLC27A1	chr19	17581349	+
intron-3CDS	ENST00000513032	ENST00000296666		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
intron-3CDS	ENST00000513032	ENST00000442138		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
intron-3CDS	ENST00000513032	ENST00000512635		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
intron-intron	ENST00000513032	ENST00000513427		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
Frame-shit	ENST00000303965	ENST00000296666		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
Frame-shit	ENST00000303965	ENST00000442138		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
Frame-shit	ENST00000303965	ENST00000512635		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
5CDS-intron	ENST00000303965	ENST00000513427		TCGA	RV	UCS	TCGA-N7-A59B-01A	ARAP2	chr4	36148918	-	PRRC1	chr5	126883511	+
Frame-shit	ENST00000393054	ENST00000304568		TCGA	RV	UCS	TCGA-N8-A56S-01A	ATP6V0A4	chr7	138406642	-	TM4SF20	chr2	228235696	-
Frame-shit	ENST00000310018	ENST00000304568		TCGA	RV	UCS	TCGA-N8-A56S-01A	ATP6V0A4	chr7	138406642	-	TM4SF20	chr2	228235696	-
In-frame	ENST00000353492	ENST00000304568		TCGA	RV	UCS	TCGA-N8-A56S-01A	ATP6V0A4	chr7	138406642	-	TM4SF20	chr2	228235696	-
intron-3CDS	ENST00000483139	ENST00000304568		TCGA	RV	UCS	TCGA-N8-A56S-01A	ATP6V0A4	chr7	138406642	-	TM4SF20	chr2	228235696	-
Frame-shit	ENST00000029410	ENST00000354179		TCGA	RV	UCS	TCGA-N6-A4VC-01A	B4GALT7	chr5	177027261	+	NSD1	chr5	176665238	+
Frame-shit	ENST00000029410	ENST00000439151		TCGA	RV	UCS	TCGA-N6-A4VC-01A	B4GALT7	chr5	177027261	+	NSD1	chr5	176665238	+
Frame-shit	ENST00000029410	ENST00000347982		TCGA	RV	UCS	TCGA-N6-A4VC-01A	B4GALT7	chr5	177027261	+	NSD1	chr5	176665238	+
Frame-shit	ENST00000029410	ENST00000361032		TCGA	RV	UCS	TCGA-N6-A4VC-01A	B4GALT7	chr5	177027261	+	NSD1	chr5	176665238	+
5CDS-intron	ENST00000029410	ENST00000511258		TCGA	RV	UCS	TCGA-N6-A4VC-01A	B4GALT7	chr5	177027261	+	NSD1	chr5	176665238	+
5UTR-3CDS	ENST00000319838	ENST00000433529		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000319838	ENST00000415783		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000319838	ENST00000282574		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000319838	ENST00000445587		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-5UTR	ENST00000319838	ENST00000482876		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-5UTR	ENST00000319838	ENST00000416149		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000438013	ENST00000433529		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000438013	ENST00000415783		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000438013	ENST00000282574		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000438013	ENST00000445587		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-5UTR	ENST00000438013	ENST00000482876		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-5UTR	ENST00000438013	ENST00000416149		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000403859	ENST00000433529		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000403859	ENST00000415783		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000403859	ENST00000282574		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-3CDS	ENST00000403859	ENST00000445587		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-5UTR	ENST00000403859	ENST00000482876		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
5UTR-5UTR	ENST00000403859	ENST00000416149		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000407714	ENST00000433529		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000407714	ENST00000415783		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000407714	ENST00000282574		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000407714	ENST00000445587		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-5UTR	ENST00000407714	ENST00000482876		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-5UTR	ENST00000407714	ENST00000416149		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000430267	ENST00000433529		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000430267	ENST00000415783		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000430267	ENST00000282574		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-3CDS	ENST00000430267	ENST00000445587		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-5UTR	ENST00000430267	ENST00000482876		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
intron-5UTR	ENST00000430267	ENST00000416149		TCGA	RV	UCS	TCGA-N8-A4PP-01A	GPR35	chr2	241546029	+	TIA1	chr2	70444126	-
In-frame	ENST00000406902	ENST00000411504		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000406902	ENST00000313838		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000406902	ENST00000399187		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000406902	ENST00000584166		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000406902	ENST00000399182		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
5CDS-intron	ENST00000406902	ENST00000583995		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000361034	ENST00000411504		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000361034	ENST00000313838		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000361034	ENST00000399187		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000361034	ENST00000584166		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000361034	ENST00000399182		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
5CDS-intron	ENST00000361034	ENST00000583995		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-3CDS	ENST00000490378	ENST00000411504		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-3CDS	ENST00000490378	ENST00000313838		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-3CDS	ENST00000490378	ENST00000399187		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-3CDS	ENST00000490378	ENST00000584166		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-3CDS	ENST00000490378	ENST00000399182		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-intron	ENST00000490378	ENST00000583995		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000408031	ENST00000411504		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000408031	ENST00000313838		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000408031	ENST00000399187		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000408031	ENST00000584166		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
In-frame	ENST00000408031	ENST00000399182		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
5CDS-intron	ENST00000408031	ENST00000583995		TCGA	RV	UCS	TCGA-N8-A4PL-01A	GRAMD4	chr22	47071449	+	LRRC48	chr17	17896079	+
intron-3CDS	ENST00000381395	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381395	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000381395	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381406	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381406	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000381406	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000416167	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000416167	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000416167	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
In-frame	ENST00000300632	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
In-frame	ENST00000300632	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
5CDS-intron	ENST00000300632	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000434045	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000434045	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000434045	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381392	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381392	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000381392	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381389	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000381389	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000381389	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000418738	ENST00000545908		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-3CDS	ENST00000418738	ENST00000216605		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
intron-intron	ENST00000418738	ENST00000556284		TCGA	RV	UCS	TCGA-NG-A4VU-01A	IGF2	chr11	2150351	-	MTHFD1	chr14	64891522	+
5CDS-5UTR	ENST00000268182	ENST00000354377		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-intron	ENST00000268182	ENST00000558115		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5CDS-5UTR	ENST00000268182	ENST00000379090		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000354377		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560738	ENST00000558115		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560738	ENST00000379090		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000354377		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-intron	ENST00000560020	ENST00000558115		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
intron-5UTR	ENST00000560020	ENST00000379090		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IQGAP1	chr15	90934105	+	ZNF774	chr15	90897874	+
5UTR-3CDS	ENST00000159111	ENST00000356136		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000159111	ENST00000528420		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000159111	ENST00000533454		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000159111	ENST00000531818		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000159111	ENST00000532130		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000159111	ENST00000539288		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-intron	ENST00000159111	ENST00000525872		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-intron	ENST00000159111	ENST00000538870		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000381759	ENST00000356136		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000381759	ENST00000528420		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000381759	ENST00000533454		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000381759	ENST00000531818		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000381759	ENST00000532130		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000381759	ENST00000539288		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-intron	ENST00000381759	ENST00000525872		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-intron	ENST00000381759	ENST00000538870		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000536461	ENST00000356136		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000536461	ENST00000528420		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000536461	ENST00000533454		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000536461	ENST00000531818		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000536461	ENST00000532130		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-3CDS	ENST00000536461	ENST00000539288		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-intron	ENST00000536461	ENST00000525872		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
5UTR-intron	ENST00000536461	ENST00000538870		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000592175	ENST00000356136		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000592175	ENST00000528420		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000592175	ENST00000533454		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000592175	ENST00000531818		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000592175	ENST00000532130		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-3CDS	ENST00000592175	ENST00000539288		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-intron	ENST00000592175	ENST00000525872		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
intron-intron	ENST00000592175	ENST00000538870		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	KDM4B	chr19	5016350	+	UVRAG	chr11	75851755	+
In-frame	ENST00000324096	ENST00000321949		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000324096	ENST00000338797		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000324096	ENST00000594658		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000324096	ENST00000601916		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000597681	ENST00000321949		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000597681	ENST00000338797		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000597681	ENST00000594658		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
intron-3CDS	ENST00000597681	ENST00000601916		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000544059	ENST00000321949		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000544059	ENST00000338797		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000544059	ENST00000594658		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
In-frame	ENST00000544059	ENST00000601916		TCGA	RV	UCS	TCGA-N8-A4PN-01A	MAP1S	chr19	17844237	+	CRTC1	chr19	18853720	+
5CDS-5UTR	ENST00000265350	ENST00000511642		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000265350	ENST00000415497		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000265350	ENST00000372988		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000265350	ENST00000510503		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000265350	ENST00000511686		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000265350	ENST00000372991		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000265350	ENST00000372987		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000265350	ENST00000414200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000467535	ENST00000511642		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000467535	ENST00000415497		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000467535	ENST00000372988		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-5UTR	ENST00000467535	ENST00000510503		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000467535	ENST00000511686		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000467535	ENST00000372991		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000467535	ENST00000372987		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5UTR-intron	ENST00000467535	ENST00000414200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409312	ENST00000511642		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409312	ENST00000415497		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409312	ENST00000372988		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409312	ENST00000510503		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409312	ENST00000511686		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409312	ENST00000372991		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409312	ENST00000372987		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409312	ENST00000414200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409060	ENST00000511642		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409060	ENST00000415497		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409060	ENST00000372988		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-5UTR	ENST00000409060	ENST00000510503		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409060	ENST00000511686		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409060	ENST00000372991		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409060	ENST00000372987		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
5CDS-intron	ENST00000409060	ENST00000414200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	MED20	chr6	41884523	-	CCND3	chr6	41908323	-
Frame-shit	ENST00000233146	ENST00000262554		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
5CDS-intron	ENST00000233146	ENST00000482632		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
5CDS-intron	ENST00000233146	ENST00000337841		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
Frame-shit	ENST00000543555	ENST00000262554		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
5CDS-intron	ENST00000543555	ENST00000482632		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
5CDS-intron	ENST00000543555	ENST00000337841		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
Frame-shit	ENST00000406134	ENST00000262554		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
5CDS-intron	ENST00000406134	ENST00000482632		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
5CDS-intron	ENST00000406134	ENST00000337841		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
intron-3CDS	ENST00000461394	ENST00000262554		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
intron-intron	ENST00000461394	ENST00000482632		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
intron-intron	ENST00000461394	ENST00000337841		TCGA	RV	UCS	TCGA-N8-A4PM-01A	MSH2	chr2	47672796	+	SPTLC1	chr9	94800647	-
In-frame	ENST00000369981	ENST00000370010		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369981	ENST00000370014		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369981	ENST00000447266		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-3UTR	ENST00000369981	ENST00000541192		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369981	ENST00000327284		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369981	ENST00000436928		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369985	ENST00000370010		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369985	ENST00000370014		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369985	ENST00000447266		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-3UTR	ENST00000369985	ENST00000541192		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369985	ENST00000327284		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369985	ENST00000436928		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369977	ENST00000370010		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369977	ENST00000370014		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369977	ENST00000447266		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-3UTR	ENST00000369977	ENST00000541192		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369977	ENST00000327284		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369977	ENST00000436928		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369975	ENST00000370010		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369975	ENST00000370014		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000369975	ENST00000447266		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-3UTR	ENST00000369975	ENST00000541192		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369975	ENST00000327284		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
5CDS-intron	ENST00000369975	ENST00000436928		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
intron-3CDS	ENST00000462633	ENST00000370010		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
intron-3CDS	ENST00000462633	ENST00000370014		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
intron-3CDS	ENST00000462633	ENST00000447266		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
intron-3UTR	ENST00000462633	ENST00000541192		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
intron-intron	ENST00000462633	ENST00000327284		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
intron-intron	ENST00000462633	ENST00000436928		TCGA	RV	UCS	TCGA-N5-A4RJ-01A	MYO6	chr6	76527381	+	SENP6	chr6	76421044	+
In-frame	ENST00000425690	ENST00000249396		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000425690	ENST00000392081		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000425690	ENST00000358931		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
5CDS-intron	ENST00000425690	ENST00000481381		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000344956	ENST00000249396		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000344956	ENST00000392081		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000344956	ENST00000358931		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
5CDS-intron	ENST00000344956	ENST00000481381		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000403059	ENST00000249396		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000403059	ENST00000392081		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000403059	ENST00000358931		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
5CDS-intron	ENST00000403059	ENST00000481381		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000406449	ENST00000249396		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000406449	ENST00000392081		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
In-frame	ENST00000406449	ENST00000358931		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
5CDS-intron	ENST00000406449	ENST00000481381		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PVR	chr19	45147475	+	SIRT2	chr19	39372131	-
5UTR-3CDS	ENST00000381352	ENST00000396037		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-3CDS	ENST00000381352	ENST00000539510		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-intron	ENST00000381352	ENST00000536558		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-intron	ENST00000381352	ENST00000404299		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-intron	ENST00000381352	ENST00000381424		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-3CDS	ENST00000405154	ENST00000396037		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-3CDS	ENST00000405154	ENST00000539510		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-intron	ENST00000405154	ENST00000536558		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-intron	ENST00000405154	ENST00000404299		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
5UTR-intron	ENST00000405154	ENST00000381424		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-3CDS	ENST00000542865	ENST00000396037		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-3CDS	ENST00000542865	ENST00000539510		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000542865	ENST00000536558		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000542865	ENST00000404299		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000542865	ENST00000381424		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-3CDS	ENST00000541490	ENST00000396037		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-3CDS	ENST00000541490	ENST00000539510		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000541490	ENST00000536558		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000541490	ENST00000404299		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000541490	ENST00000381424		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-3CDS	ENST00000282884	ENST00000396037		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-3CDS	ENST00000282884	ENST00000539510		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000282884	ENST00000536558		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000282884	ENST00000404299		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
intron-intron	ENST00000282884	ENST00000381424		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
3UTR-3CDS	ENST00000538081	ENST00000396037		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
3UTR-3CDS	ENST00000538081	ENST00000539510		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
3UTR-intron	ENST00000538081	ENST00000536558		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
3UTR-intron	ENST00000538081	ENST00000404299		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
3UTR-intron	ENST00000538081	ENST00000381424		TCGA	RV	UCS	TCGA-ND-A4WF-01A	RASSF8	chr12	26112081	+	ST8SIA1	chr12	22354972	-
In-frame	ENST00000409792	ENST00000335044		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000265529		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000444589		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000452770		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000409792	ENST00000352910		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-5UTR	ENST00000409792	ENST00000487440		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-intron	ENST00000409792	ENST00000425853		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-intron	ENST00000409792	ENST00000432493		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
5CDS-intron	ENST00000409792	ENST00000425452		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000335044		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000265529		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000444589		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000452770		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-3CDS	ENST00000492397	ENST00000352910		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-5UTR	ENST00000492397	ENST00000487440		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-intron	ENST00000492397	ENST00000425853		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-intron	ENST00000492397	ENST00000432493		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
intron-intron	ENST00000492397	ENST00000425452		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	KIF9	chr3	47289576	-
In-frame	ENST00000430939	ENST00000397410		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
In-frame	ENST00000430939	ENST00000595465		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000430939	ENST00000595879		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
In-frame	ENST00000221742	ENST00000397410		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
In-frame	ENST00000221742	ENST00000595465		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000221742	ENST00000595879		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
In-frame	ENST00000600144	ENST00000397410		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
In-frame	ENST00000600144	ENST00000595465		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000600144	ENST00000595879		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
Frame-shit	ENST00000598504	ENST00000397410		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
Frame-shit	ENST00000598504	ENST00000595465		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000598504	ENST00000595879		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
Frame-shit	ENST00000544886	ENST00000397410		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
Frame-shit	ENST00000544886	ENST00000595465		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
5CDS-intron	ENST00000544886	ENST00000595879		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC1A6	chr19	15075131	-	AKAP8L	chr19	15491423	-
Frame-shit	ENST00000262554	ENST00000375643		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5CDS-5UTR	ENST00000262554	ENST00000375629		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5CDS-5UTR	ENST00000262554	ENST00000443024		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5CDS-5UTR	ENST00000262554	ENST00000447699		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5CDS-5UTR	ENST00000262554	ENST00000375627		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5CDS-intron	ENST00000262554	ENST00000474340		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5UTR-3CDS	ENST00000482632	ENST00000375643		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5UTR-5UTR	ENST00000482632	ENST00000375629		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5UTR-5UTR	ENST00000482632	ENST00000443024		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5UTR-5UTR	ENST00000482632	ENST00000447699		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5UTR-5UTR	ENST00000482632	ENST00000375627		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5UTR-intron	ENST00000482632	ENST00000474340		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
intron-3CDS	ENST00000337841	ENST00000375643		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
intron-5UTR	ENST00000337841	ENST00000375629		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
intron-5UTR	ENST00000337841	ENST00000443024		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
intron-5UTR	ENST00000337841	ENST00000447699		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
intron-5UTR	ENST00000337841	ENST00000375627		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
intron-intron	ENST00000337841	ENST00000474340		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SPTLC1	chr9	94830248	-	IARS	chr9	95007353	-
5CDS-5UTR	ENST00000378312	ENST00000264021		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000378312	ENST00000264020		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000378312	ENST00000530872		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000378312	ENST00000527868		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000278422	ENST00000264021		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000278422	ENST00000264020		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000278422	ENST00000530872		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-5UTR	ENST00000278422	ENST00000527868		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TMX2	chr11	57480279	+	IFT46	chr11	118435776	-
5CDS-intron	ENST00000406386	ENST00000354694		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-5UTR	ENST00000406386	ENST00000402281		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-5UTR	ENST00000406386	ENST00000405677		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000406386	ENST00000402284		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000406386	ENST00000335214		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000406386	ENST00000492986		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-intron	ENST00000407319	ENST00000354694		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-5UTR	ENST00000407319	ENST00000402281		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-5UTR	ENST00000407319	ENST00000405677		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-intron	ENST00000407319	ENST00000402284		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-intron	ENST00000407319	ENST00000335214		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-intron	ENST00000407319	ENST00000492986		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000403663	ENST00000354694		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-5UTR	ENST00000403663	ENST00000402281		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-5UTR	ENST00000403663	ENST00000405677		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000403663	ENST00000402284		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000403663	ENST00000335214		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
5CDS-intron	ENST00000403663	ENST00000492986		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	TRIOBP	chr22	38161824	+	PES1	chr22	30988385	-
intron-5UTR	ENST00000296490	ENST00000478968		TCGA	RV	UCS	TCGA-N6-A4VG-01A	WDR82	chr3	52318544	-	GLT8D1	chr3	52734512	-
intron-5UTR	ENST00000296490	ENST00000394783		TCGA	RV	UCS	TCGA-N6-A4VG-01A	WDR82	chr3	52318544	-	GLT8D1	chr3	52734512	-
intron-5UTR	ENST00000296490	ENST00000407584		TCGA	RV	UCS	TCGA-N6-A4VG-01A	WDR82	chr3	52318544	-	GLT8D1	chr3	52734512	-
intron-5UTR	ENST00000296490	ENST00000266014		TCGA	RV	UCS	TCGA-N6-A4VG-01A	WDR82	chr3	52318544	-	GLT8D1	chr3	52734512	-
intron-5UTR	ENST00000296490	ENST00000491606		TCGA	RV	UCS	TCGA-N6-A4VG-01A	WDR82	chr3	52318544	-	GLT8D1	chr3	52734512	-
intron-intron	ENST00000296490	ENST00000463827		TCGA	RV	UCS	TCGA-N6-A4VG-01A	WDR82	chr3	52318544	-	GLT8D1	chr3	52734512	-
5UTR-3CDS	ENST00000313732	ENST00000355458		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-3CDS	ENST00000313732	ENST00000264990		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-5UTR	ENST00000313732	ENST00000545291		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-5UTR	ENST00000313732	ENST00000481970		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-intron	ENST00000313732	ENST00000489991		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-3CDS	ENST00000564466	ENST00000355458		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-3CDS	ENST00000564466	ENST00000264990		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-5UTR	ENST00000564466	ENST00000545291		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-5UTR	ENST00000564466	ENST00000481970		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
5UTR-intron	ENST00000564466	ENST00000489991		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
intron-3CDS	ENST00000569488	ENST00000355458		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
intron-3CDS	ENST00000569488	ENST00000264990		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
intron-5UTR	ENST00000569488	ENST00000545291		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
intron-5UTR	ENST00000569488	ENST00000481970		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
intron-intron	ENST00000569488	ENST00000489991		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZDHHC7	chr16	85044892	-	ACAD11	chr3	132350323	-
Frame-shit	ENST00000536254	ENST00000246551		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
Frame-shit	ENST00000536254	ENST00000437550		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000360729	ENST00000246551		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000360729	ENST00000437550		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000588311	ENST00000246551		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000588311	ENST00000437550		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000585696	ENST00000246551		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000585696	ENST00000437550		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000392163	ENST00000246551		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
intron-3CDS	ENST00000392163	ENST00000437550		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ZNF567	chr19	37185778	+	HCST	chr19	36394253	+
Frame-shit	ENST00000535206	ENST00000472232		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000467389		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000535206	ENST00000379704		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
Frame-shit	ENST00000379731	ENST00000472232		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000467389		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
5CDS-intron	ENST00000379731	ENST00000379704		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-3CDS	ENST00000541851	ENST00000472232		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000467389		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-intron	ENST00000541851	ENST00000379704		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	B4GALT1	chr9	33166756	-	BAG1	chr9	33262828	-
intron-3CDS	ENST00000245907	ENST00000369002		TCGA	RV	UCS	TCGA-N8-A4PP-01A	C3	chr19	6677846	-	SEC63	chr6	108214782	-
intron-intron	ENST00000245907	ENST00000460009		TCGA	RV	UCS	TCGA-N8-A4PP-01A	C3	chr19	6677846	-	SEC63	chr6	108214782	-
intron-3CDS	ENST00000599668	ENST00000369002		TCGA	RV	UCS	TCGA-N8-A4PP-01A	C3	chr19	6677846	-	SEC63	chr6	108214782	-
intron-intron	ENST00000599668	ENST00000460009		TCGA	RV	UCS	TCGA-N8-A4PP-01A	C3	chr19	6677846	-	SEC63	chr6	108214782	-
Frame-shit	ENST00000380833	ENST00000380913		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000380833	ENST00000493668		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000380833	ENST00000418909		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
Frame-shit	ENST00000380829	ENST00000380913		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000380829	ENST00000493668		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
5CDS-intron	ENST00000380829	ENST00000418909		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
intron-3CDS	ENST00000421085	ENST00000380913		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
intron-intron	ENST00000421085	ENST00000493668		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
intron-intron	ENST00000421085	ENST00000418909		TCGA	RV	UCS	TCGA-N8-A56S-01A	CLCN4	chrX	10155654	+	SHROOM2	chrX	9841692	+
In-frame	ENST00000420329	ENST00000560219		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000420329	ENST00000558723		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000420329	ENST00000341735		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3CDS	ENST00000560098	ENST00000560219		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000560098	ENST00000558723		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000560098	ENST00000341735		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
In-frame	ENST00000268184	ENST00000560219		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000268184	ENST00000558723		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
5CDS-3UTR	ENST00000268184	ENST00000341735		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3CDS	ENST00000558619	ENST00000560219		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000558619	ENST00000558723		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3UTR	ENST00000558619	ENST00000341735		TCGA	RV	UCS	TCGA-NA-A4R1-01A	CRTC3	chr15	91182047	+	MESP2	chr15	90321296	+
intron-3CDS	ENST00000471014	ENST00000382199		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000471014	ENST00000421047		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000471014	ENST00000457616		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000471014	ENST00000346192		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-intron	ENST00000471014	ENST00000494906		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000405570	ENST00000382199		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000405570	ENST00000421047		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000405570	ENST00000457616		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-3CDS	ENST00000405570	ENST00000346192		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
intron-intron	ENST00000405570	ENST00000494906		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396183	ENST00000382199		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396183	ENST00000421047		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396183	ENST00000457616		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396183	ENST00000346192		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-intron	ENST00000396183	ENST00000494906		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000349496	ENST00000382199		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000349496	ENST00000421047		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000349496	ENST00000457616		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000349496	ENST00000346192		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-intron	ENST00000349496	ENST00000494906		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000453024	ENST00000382199		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000453024	ENST00000421047		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000453024	ENST00000457616		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000453024	ENST00000346192		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-intron	ENST00000453024	ENST00000494906		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396185	ENST00000382199		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396185	ENST00000421047		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396185	ENST00000457616		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-3CDS	ENST00000396185	ENST00000346192		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
5UTR-intron	ENST00000396185	ENST00000494906		TCGA	RV	UCS	TCGA-ND-A4WF-01A	CTNNB1	chr3	41241161	+	IGF2BP2	chr3	185416135	-
Frame-shit	ENST00000280886	ENST00000315289		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
Frame-shit	ENST00000280886	ENST00000395265		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
Frame-shit	ENST00000280886	ENST00000373789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
5CDS-intron	ENST00000280886	ENST00000395260		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-3CDS	ENST00000381496	ENST00000315289		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-3CDS	ENST00000381496	ENST00000395265		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-3CDS	ENST00000381496	ENST00000373789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-intron	ENST00000381496	ENST00000395260		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-3CDS	ENST00000540204	ENST00000315289		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-3CDS	ENST00000540204	ENST00000395265		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-3CDS	ENST00000540204	ENST00000373789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-intron	ENST00000540204	ENST00000395260		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DIP2C	chr10	334304	-	RTKN2	chr10	63959620	-
intron-intron	ENST00000202028	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000202028	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000202028	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000373950	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000373950	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000373950	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000441639	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000441639	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000441639	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000373946	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000373946	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000373946	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000338074	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000338074	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5CDS-intron	ENST00000338074	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000373941	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000373941	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000373941	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000479336	ENST00000374012		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000479336	ENST00000439301		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
intron-intron	ENST00000479336	ENST00000481202		TCGA	RV	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34820721	+	PHF20	chr20	34437311	+
5UTR-3CDS	ENST00000368655	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A59F-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	154076686	-
5UTR-intron	ENST00000368655	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A59F-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	154076686	-
5UTR-intron	ENST00000368655	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A59F-01A	GATAD2B	chr1	153895209	-	NUP210L	chr1	154076686	-
In-frame	ENST00000351960	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000351960	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000351960	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000351960	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000351960	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000358965	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358965	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358965	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358965	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000358965	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
In-frame	ENST00000393695	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000393695	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000393695	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000393695	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000393695	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000543450	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
intron-intron	ENST00000543450	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
intron-intron	ENST00000543450	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
intron-intron	ENST00000543450	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
intron-intron	ENST00000543450	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4V9-01A	NUMA1	chr11	71713911	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000554546	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554546	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554546	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554546	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554546	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554546	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000554546	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000356296	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000356296	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000356296	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000356296	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000356296	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000356296	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000356296	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000557597	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000557597	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000557597	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000557597	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000557597	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000557597	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000557597	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555238	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555238	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555238	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555238	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555238	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555238	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000555238	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000355058	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000355058	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000355058	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000355058	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000355058	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000355058	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000355058	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000359560	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000359560	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000359560	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000359560	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000359560	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000359560	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000359560	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555394	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555394	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555394	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555394	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555394	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555394	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000555394	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000454166	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000454166	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000454166	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000454166	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000454166	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000454166	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000454166	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000544991	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000544991	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000544991	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000544991	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000544991	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000544991	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000544991	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000560335	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000560335	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000560335	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000560335	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000560335	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000560335	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000560335	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555738	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555738	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555738	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555738	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555738	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000555738	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000555738	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000559312	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000559312	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000559312	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000559312	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000559312	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000559312	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000559312	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554521	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554521	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554521	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554521	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554521	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000554521	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000554521	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000535282	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000535282	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000535282	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000535282	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000535282	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000535282	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
5CDS-intron	ENST00000535282	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556600	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556600	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556600	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556600	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556600	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556600	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-intron	ENST00000556600	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556772	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556772	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556772	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556772	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556772	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-3CDS	ENST00000556772	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
intron-intron	ENST00000556772	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RD-01A	NUMB	chr14	73822334	-	DNM2	chr19	10893636	+
Frame-shit	ENST00000262241	ENST00000359520		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RCOR1	chr14	103059662	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000262241	ENST00000561228		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RCOR1	chr14	103059662	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000262241	ENST00000558678		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RCOR1	chr14	103059662	+	TECPR2	chr14	102963316	+
Frame-shit	ENST00000570597	ENST00000359520		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RCOR1	chr14	103059662	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000570597	ENST00000561228		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RCOR1	chr14	103059662	+	TECPR2	chr14	102963316	+
5CDS-intron	ENST00000570597	ENST00000558678		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RCOR1	chr14	103059662	+	TECPR2	chr14	102963316	+
3UTR-5UTR	ENST00000494757	ENST00000336308		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
3UTR-intron	ENST00000494757	ENST00000578232		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
3UTR-5UTR	ENST00000494757	ENST00000544210		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
3UTR-5UTR	ENST00000494757	ENST00000394250		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
3UTR-5UTR	ENST00000494757	ENST00000580611		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000323571	ENST00000336308		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000323571	ENST00000578232		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000323571	ENST00000544210		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000323571	ENST00000394250		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000323571	ENST00000580611		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000585043	ENST00000336308		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000585043	ENST00000578232		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000585043	ENST00000544210		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000585043	ENST00000394250		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000585043	ENST00000580611		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000394103	ENST00000336308		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-intron	ENST00000394103	ENST00000578232		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000394103	ENST00000544210		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000394103	ENST00000394250		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000394103	ENST00000580611		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000536600	ENST00000336308		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-intron	ENST00000536600	ENST00000578232		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000536600	ENST00000544210		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000536600	ENST00000394250		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
intron-5UTR	ENST00000536600	ENST00000580611		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000583130	ENST00000336308		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-intron	ENST00000583130	ENST00000578232		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000583130	ENST00000544210		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000583130	ENST00000394250		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
5CDS-5UTR	ENST00000583130	ENST00000580611		TCGA	RV	UCS	TCGA-N5-A59E-01A	WIPF2	chr17	38421398	+	STARD3	chr17	37809734	+
Frame-shit	ENST00000326648	ENST00000333039		TCGA	RV	UCS	TCGA-N6-A4VG-01A	ZNF609	chr15	64915251	+	NPTXR	chr22	39224517	-
intron-3CDS	ENST00000416172	ENST00000333039		TCGA	RV	UCS	TCGA-N6-A4VG-01A	ZNF609	chr15	64915251	+	NPTXR	chr22	39224517	-
intron-3CDS	ENST00000559364	ENST00000333039		TCGA	RV	UCS	TCGA-N6-A4VG-01A	ZNF609	chr15	64915251	+	NPTXR	chr22	39224517	-
Frame-shit	ENST00000335221	ENST00000253247		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000335221	ENST00000581966		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000335221	ENST00000535137		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
Frame-shit	ENST00000321892	ENST00000253247		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000321892	ENST00000581966		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000321892	ENST00000535137		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
Frame-shit	ENST00000306378	ENST00000253247		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000306378	ENST00000581966		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000306378	ENST00000535137		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
Frame-shit	ENST00000424123	ENST00000253247		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000424123	ENST00000581966		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
5CDS-intron	ENST00000424123	ENST00000535137		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
intron-3CDS	ENST00000577770	ENST00000253247		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
intron-intron	ENST00000577770	ENST00000581966		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
intron-intron	ENST00000577770	ENST00000535137		TCGA	RV	UCS	TCGA-N8-A56S-01A	BPTF	chr17	65862803	+	NOL11	chr17	65739859	+
In-frame	ENST00000334018	ENST00000400338		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000334018	ENST00000400335		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000334018	ENST00000327813		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000334018	ENST00000407188		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
5CDS-intron	ENST00000334018	ENST00000479755		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404820	ENST00000400338		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404820	ENST00000400335		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404820	ENST00000327813		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404820	ENST00000407188		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
5CDS-intron	ENST00000404820	ENST00000479755		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404755	ENST00000400338		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404755	ENST00000400335		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404755	ENST00000327813		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
In-frame	ENST00000404755	ENST00000407188		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
5CDS-intron	ENST00000404755	ENST00000479755		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
3UTR-3CDS	ENST00000484039	ENST00000400338		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
3UTR-3CDS	ENST00000484039	ENST00000400335		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
3UTR-3CDS	ENST00000484039	ENST00000327813		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
3UTR-3CDS	ENST00000484039	ENST00000407188		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
3UTR-intron	ENST00000484039	ENST00000479755		TCGA	RV	UCS	TCGA-N8-A56S-01A	EMID1	chr22	29611619	+	KREMEN1	chr22	29490246	+
Frame-shit	ENST00000264899	ENST00000341029		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000264899	ENST00000355810		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000264899	ENST00000349321		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
5CDS-intron	ENST00000264899	ENST00000513494		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000325942	ENST00000341029		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000325942	ENST00000355810		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000325942	ENST00000349321		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
5CDS-intron	ENST00000325942	ENST00000513494		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000264895	ENST00000341029		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000264895	ENST00000355810		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
Frame-shit	ENST00000264895	ENST00000349321		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
5CDS-intron	ENST00000264895	ENST00000513494		TCGA	RV	UCS	TCGA-NG-A4VU-01A	FRAS1	chr4	78987170	+	ART3	chr4	77033539	+
5CDS-5UTR	ENST00000374864	ENST00000375114		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000374864	ENST00000246194		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000374864	ENST00000493399		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000535650	ENST00000375114		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000535650	ENST00000246194		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000535650	ENST00000493399		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000262650	ENST00000375114		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-5UTR	ENST00000262650	ENST00000246194		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
5CDS-intron	ENST00000262650	ENST00000493399		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
intron-5UTR	ENST00000483727	ENST00000375114		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
intron-5UTR	ENST00000483727	ENST00000246194		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
intron-intron	ENST00000483727	ENST00000493399		TCGA	RV	UCS	TCGA-N5-A4RA-01A	ITCH	chr20	33028149	+	RALY	chr20	32619328	+
intron-3CDS	ENST00000444761	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000444761	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000444761	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000444761	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000444761	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000444761	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409105	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409105	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409105	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409105	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409105	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409105	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409913	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409913	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409913	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409913	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409913	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409913	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000319466	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000319466	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000319466	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000319466	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000319466	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000319466	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409800	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409800	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409800	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409800	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409800	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409800	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000493804	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000493804	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000493804	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000493804	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000493804	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000493804	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409207	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409207	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409207	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409207	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409207	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409207	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409973	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3CDS	ENST00000409973	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409973	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-3UTR	ENST00000409973	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409973	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
5UTR-5UTR	ENST00000409973	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409147	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409147	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409147	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409147	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409147	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409147	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409218	ENST00000409245		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3CDS	ENST00000409218	ENST00000319190		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409218	ENST00000461601		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-3UTR	ENST00000409218	ENST00000394850		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409218	ENST00000263737		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
intron-5UTR	ENST00000409218	ENST00000536057		TCGA	RV	UCS	TCGA-NA-A4R1-01A	MCFD2	chr2	47142862	-	TTC7A	chr2	47177502	+
In-frame	ENST00000367142	ENST00000355875		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
In-frame	ENST00000367142	ENST00000366541		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
In-frame	ENST00000367142	ENST00000343783		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
5CDS-intron	ENST00000367142	ENST00000391846		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
5CDS-intron	ENST00000367142	ENST00000496361		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
intron-3CDS	ENST00000464938	ENST00000355875		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
intron-3CDS	ENST00000464938	ENST00000366541		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
intron-3CDS	ENST00000464938	ENST00000343783		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
intron-intron	ENST00000464938	ENST00000391846		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
intron-intron	ENST00000464938	ENST00000496361		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NUCKS1	chr1	205696828	-	SDCCAG8	chr1	243579004	+
Frame-shit	ENST00000354300	ENST00000548312		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	PPTC7	chr12	110983685	-	HVCN1	chr12	111065981	-
5CDS-intron	ENST00000354300	ENST00000242607		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	PPTC7	chr12	110983685	-	HVCN1	chr12	111065981	-
5CDS-intron	ENST00000354300	ENST00000356742		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	PPTC7	chr12	110983685	-	HVCN1	chr12	111065981	-
5CDS-intron	ENST00000354300	ENST00000439744		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	PPTC7	chr12	110983685	-	HVCN1	chr12	111065981	-
Frame-shit	ENST00000367510	ENST00000303375		TCGA	RV	UCS	TCGA-N5-A4RS-01A	RNF2	chr1	185056772	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000367510	ENST00000446119		TCGA	RV	UCS	TCGA-N5-A4RS-01A	RNF2	chr1	185056772	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000367510	ENST00000580916		TCGA	RV	UCS	TCGA-N5-A4RS-01A	RNF2	chr1	185056772	+	MRC2	chr17	60741909	+
Frame-shit	ENST00000367509	ENST00000303375		TCGA	RV	UCS	TCGA-N5-A4RS-01A	RNF2	chr1	185056772	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000367509	ENST00000446119		TCGA	RV	UCS	TCGA-N5-A4RS-01A	RNF2	chr1	185056772	+	MRC2	chr17	60741909	+
5CDS-intron	ENST00000367509	ENST00000580916		TCGA	RV	UCS	TCGA-N5-A4RS-01A	RNF2	chr1	185056772	+	MRC2	chr17	60741909	+
5CDS-5UTR	ENST00000237530	ENST00000245663		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000237530	ENST00000395104		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000237530	ENST00000302995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000237530	ENST00000480766		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000373622	ENST00000245663		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000373622	ENST00000395104		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-5UTR	ENST00000373622	ENST00000302995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5CDS-intron	ENST00000373622	ENST00000480766		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
3UTR-5UTR	ENST00000470352	ENST00000245663		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
3UTR-5UTR	ENST00000470352	ENST00000395104		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
3UTR-5UTR	ENST00000470352	ENST00000302995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
3UTR-intron	ENST00000470352	ENST00000480766		TCGA	RV	UCS	TCGA-N8-A4PN-01A	RPN2	chr20	35858462	+	ZBTB46	chr20	62422143	-
5UTR-intron	ENST00000444631	ENST00000394182		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-intron	ENST00000444631	ENST00000322569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-intron	ENST00000444631	ENST00000548629		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-intron	ENST00000444631	ENST00000409200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-5UTR	ENST00000444631	ENST00000547487		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000394182		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000322569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000548629		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000336133	ENST00000409200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-5UTR	ENST00000336133	ENST00000547487		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000394182		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000322569		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000548629		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-intron	ENST00000552080	ENST00000409200		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5CDS-5UTR	ENST00000552080	ENST00000547487		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SARNP	chr12	56211450	-	MMP19	chr12	56236222	-
5UTR-3CDS	ENST00000361757	ENST00000590083		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
5UTR-3CDS	ENST00000361757	ENST00000382477		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
5UTR-3CDS	ENST00000361757	ENST00000215376		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
5UTR-3CDS	ENST00000587024	ENST00000590083		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
5UTR-3CDS	ENST00000587024	ENST00000382477		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
5UTR-3CDS	ENST00000587024	ENST00000215376		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
intron-3CDS	ENST00000438103	ENST00000590083		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
intron-3CDS	ENST00000438103	ENST00000382477		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
intron-3CDS	ENST00000438103	ENST00000215376		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SBNO2	chr19	1174171	-	C19orf26	chr19	1234741	-
5UTR-3CDS	ENST00000219343	ENST00000569600		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SLC7A6	chr16	68300624	+	C16orf70	chr16	67165189	+
5UTR-3CDS	ENST00000219343	ENST00000219139		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SLC7A6	chr16	68300624	+	C16orf70	chr16	67165189	+
5UTR-3UTR	ENST00000219343	ENST00000569683		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SLC7A6	chr16	68300624	+	C16orf70	chr16	67165189	+
5UTR-3CDS	ENST00000566454	ENST00000569600		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SLC7A6	chr16	68300624	+	C16orf70	chr16	67165189	+
5UTR-3CDS	ENST00000566454	ENST00000219139		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SLC7A6	chr16	68300624	+	C16orf70	chr16	67165189	+
5UTR-3UTR	ENST00000566454	ENST00000569683		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SLC7A6	chr16	68300624	+	C16orf70	chr16	67165189	+
Frame-shit	ENST00000357056	ENST00000307358		TCGA	RV	UCS	TCGA-N5-A4RV-01A	TTC7B	chr14	91211136	-	HTRA3	chr4	8284164	+
Frame-shit	ENST00000357056	ENST00000382512		TCGA	RV	UCS	TCGA-N5-A4RV-01A	TTC7B	chr14	91211136	-	HTRA3	chr4	8284164	+
Frame-shit	ENST00000328459	ENST00000307358		TCGA	RV	UCS	TCGA-N5-A4RV-01A	TTC7B	chr14	91211136	-	HTRA3	chr4	8284164	+
Frame-shit	ENST00000328459	ENST00000382512		TCGA	RV	UCS	TCGA-N5-A4RV-01A	TTC7B	chr14	91211136	-	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000554654	ENST00000307358		TCGA	RV	UCS	TCGA-N5-A4RV-01A	TTC7B	chr14	91211136	-	HTRA3	chr4	8284164	+
intron-3CDS	ENST00000554654	ENST00000382512		TCGA	RV	UCS	TCGA-N5-A4RV-01A	TTC7B	chr14	91211136	-	HTRA3	chr4	8284164	+
5CDS-intron	ENST00000264818	ENST00000598155		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
5CDS-intron	ENST00000264818	ENST00000245934		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
5CDS-intron	ENST00000524462	ENST00000598155		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
5CDS-intron	ENST00000524462	ENST00000245934		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
5CDS-intron	ENST00000525621	ENST00000598155		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
5CDS-intron	ENST00000525621	ENST00000245934		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
intron-intron	ENST00000529370	ENST00000598155		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
intron-intron	ENST00000529370	ENST00000245934		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
intron-intron	ENST00000529422	ENST00000598155		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
intron-intron	ENST00000529422	ENST00000245934		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	TYK2	chr19	10467244	-	SYMPK	chr19	46347458	-
5UTR-5UTR	ENST00000314393	ENST00000409895		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZHX2	chr8	123794185	+	PPM1B	chr2	44428325	+
5UTR-5UTR	ENST00000314393	ENST00000409432		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZHX2	chr8	123794185	+	PPM1B	chr2	44428325	+
5UTR-5UTR	ENST00000314393	ENST00000282412		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZHX2	chr8	123794185	+	PPM1B	chr2	44428325	+
5UTR-5UTR	ENST00000314393	ENST00000378551		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZHX2	chr8	123794185	+	PPM1B	chr2	44428325	+
5UTR-3UTR	ENST00000314393	ENST00000378540		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZHX2	chr8	123794185	+	PPM1B	chr2	44428325	+
5UTR-intron	ENST00000314393	ENST00000345249		TCGA	RV	UCS	TCGA-N8-A56S-01A	ZHX2	chr8	123794185	+	PPM1B	chr2	44428325	+
Frame-shit	ENST00000344773	ENST00000515877		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000344773	ENST00000503738		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000344773	ENST00000458167		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000344773	ENST00000424214		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000344773	ENST00000407583		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000344773	ENST00000264718		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000344773	ENST00000610189		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000344773	ENST00000461249		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000515877		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000503738		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000458167		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000424214		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000407583		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000264718		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379624	ENST00000610189		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000379624	ENST00000461249		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000515877		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000503738		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000458167		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000424214		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000407583		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000264718		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000342045	ENST00000610189		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000342045	ENST00000461249		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000515877		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000503738		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000458167		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000424214		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000407583		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000264718		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000379632	ENST00000610189		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000379632	ENST00000461249		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000515877		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000503738		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000458167		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000424214		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000407583		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000264718		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
Frame-shit	ENST00000361704	ENST00000610189		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000361704	ENST00000461249		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000515877		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000503738		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000458167		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000424214		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000407583		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000264718		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3CDS	ENST00000603461	ENST00000610189		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
intron-3UTR	ENST00000603461	ENST00000461249		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	BRE	chr2	28117551	+	GPN1	chr2	27870703	+
5CDS-3UTR	ENST00000356083	ENST00000490544		TCGA	RV	UCS	TCGA-NA-A4QV-01A	COL27A1	chr9	117053197	+	C9orf43	chr9	116181388	+
5CDS-3UTR	ENST00000356083	ENST00000374165		TCGA	RV	UCS	TCGA-NA-A4QV-01A	COL27A1	chr9	117053197	+	C9orf43	chr9	116181388	+
5CDS-3UTR	ENST00000356083	ENST00000288462		TCGA	RV	UCS	TCGA-NA-A4QV-01A	COL27A1	chr9	117053197	+	C9orf43	chr9	116181388	+
intron-3UTR	ENST00000477421	ENST00000490544		TCGA	RV	UCS	TCGA-NA-A4QV-01A	COL27A1	chr9	117053197	+	C9orf43	chr9	116181388	+
intron-3UTR	ENST00000477421	ENST00000374165		TCGA	RV	UCS	TCGA-NA-A4QV-01A	COL27A1	chr9	117053197	+	C9orf43	chr9	116181388	+
intron-3UTR	ENST00000477421	ENST00000288462		TCGA	RV	UCS	TCGA-NA-A4QV-01A	COL27A1	chr9	117053197	+	C9orf43	chr9	116181388	+
Frame-shit	ENST00000585892	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000585892	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000585892	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000585892	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
In-frame	ENST00000585892	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000314646	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000314646	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000314646	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000314646	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
In-frame	ENST00000314646	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000359692	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000359692	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000359692	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000359692	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
In-frame	ENST00000359692	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000389253	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000389253	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000389253	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000389253	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
In-frame	ENST00000389253	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000355667	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000355667	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000355667	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000355667	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
In-frame	ENST00000355667	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000408974	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000408974	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000408974	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
Frame-shit	ENST00000408974	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
In-frame	ENST00000408974	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000591819	ENST00000307422		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000591819	ENST00000253099		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000591819	ENST00000590669		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000591819	ENST00000393733		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
intron-3CDS	ENST00000591819	ENST00000588502		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10363073	+
5CDS-5UTR	ENST00000262809	ENST00000320033		TCGA	RV	UCS	TCGA-N5-A4RM-01A	ELL	chr19	18632731	-	ARL4D	chr17	41477029	+
intron-5UTR	ENST00000596124	ENST00000320033		TCGA	RV	UCS	TCGA-N5-A4RM-01A	ELL	chr19	18632731	-	ARL4D	chr17	41477029	+
5CDS-3UTR	ENST00000411458	ENST00000537871		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000411458	ENST00000439013		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000411458	ENST00000255688		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000411458	ENST00000354445		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
intron-3UTR	ENST00000539851	ENST00000537871		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000539851	ENST00000439013		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000539851	ENST00000255688		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000539851	ENST00000354445		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-3UTR	ENST00000377702	ENST00000537871		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000377702	ENST00000439013		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000377702	ENST00000255688		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000377702	ENST00000354445		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-3UTR	ENST00000438980	ENST00000537871		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000438980	ENST00000439013		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000438980	ENST00000255688		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000438980	ENST00000354445		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-3UTR	ENST00000313074	ENST00000537871		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000313074	ENST00000439013		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000313074	ENST00000255688		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000313074	ENST00000354445		TCGA	RV	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056193	+	RARRES3	chr11	63313621	+
Frame-shit	ENST00000264712	ENST00000376957		TCGA	RV	UCS	TCGA-N8-A4PL-01A	KIF3C	chr2	26203242	-	SRM	chr1	11119402	-
In-frame	ENST00000405914	ENST00000376957		TCGA	RV	UCS	TCGA-N8-A4PL-01A	KIF3C	chr2	26203242	-	SRM	chr1	11119402	-
intron-3CDS	ENST00000496378	ENST00000376957		TCGA	RV	UCS	TCGA-N8-A4PL-01A	KIF3C	chr2	26203242	-	SRM	chr1	11119402	-
5CDS-5UTR	ENST00000446044	ENST00000333430		TCGA	RV	UCS	TCGA-N6-A4VE-01A	MAPKAPK3	chr3	50655215	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000446044	ENST00000439028		TCGA	RV	UCS	TCGA-N6-A4VE-01A	MAPKAPK3	chr3	50655215	+	S1PR5	chr19	10625705	-
intron-5UTR	ENST00000497283	ENST00000333430		TCGA	RV	UCS	TCGA-N6-A4VE-01A	MAPKAPK3	chr3	50655215	+	S1PR5	chr19	10625705	-
intron-5UTR	ENST00000497283	ENST00000439028		TCGA	RV	UCS	TCGA-N6-A4VE-01A	MAPKAPK3	chr3	50655215	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000357955	ENST00000333430		TCGA	RV	UCS	TCGA-N6-A4VE-01A	MAPKAPK3	chr3	50655215	+	S1PR5	chr19	10625705	-
5CDS-5UTR	ENST00000357955	ENST00000439028		TCGA	RV	UCS	TCGA-N6-A4VE-01A	MAPKAPK3	chr3	50655215	+	S1PR5	chr19	10625705	-
In-frame	ENST00000396556	ENST00000306357		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
In-frame	ENST00000396556	ENST00000574431		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
5CDS-intron	ENST00000396556	ENST00000573373		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
In-frame	ENST00000438237	ENST00000306357		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
In-frame	ENST00000438237	ENST00000574431		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
5CDS-intron	ENST00000438237	ENST00000573373		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
intron-3CDS	ENST00000467647	ENST00000306357		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
intron-3CDS	ENST00000467647	ENST00000574431		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
intron-intron	ENST00000467647	ENST00000573373		TCGA	RV	UCS	TCGA-N5-A59E-01A	OSBPL10	chr3	31917925	-	STX8	chr17	9153962	-
intron-3UTR	ENST00000259605	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000259605	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000259605	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000353739	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000353739	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000353739	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000357058	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000357058	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000357058	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000350199	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000350199	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000350199	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377885	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377885	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377885	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000377877	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000377877	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
5UTR-3UTR	ENST00000377877	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000491349	ENST00000493368		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000491349	ENST00000318158		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000491349	ENST00000607784		TCGA	RV	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400551	-	GRHPR	chr9	37425919	+
Frame-shit	ENST00000377892	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377892	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377892	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377892	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377890	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377890	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377890	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377890	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377891	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377891	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377891	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377891	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377889	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377889	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377889	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377889	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000535296	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000535296	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000535296	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000535296	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000338663	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000338663	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000338663	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000338663	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000538682	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000538682	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000538682	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000538682	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000536981	ENST00000415229		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000536981	ENST00000535727		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000536981	ENST00000301776		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000536981	ENST00000528206		TCGA	RV	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62623853	+	ASRGL1	chr11	62156605	+
5CDS-5UTR	ENST00000295951	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000295951	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000295951	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000295951	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000295951	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5UTR-5UTR	ENST00000416870	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5UTR-5UTR	ENST00000416870	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5UTR-intron	ENST00000416870	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5UTR-intron	ENST00000416870	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5UTR-intron	ENST00000416870	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000295952	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000295952	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000295952	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000295952	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000295952	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000383718	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000383718	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000383718	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000383718	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000383718	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000428312	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000428312	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000428312	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000428312	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000428312	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000449503	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-5UTR	ENST00000449503	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000449503	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000449503	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
5CDS-intron	ENST00000449503	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000472546	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000472546	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000472546	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000472546	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000472546	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000442599	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000442599	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000442599	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000442599	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000442599	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000495364	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000495364	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000495364	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000495364	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000495364	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000494088	ENST00000358632		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-5UTR	ENST00000494088	ENST00000268053		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000494088	ENST00000419019		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000494088	ENST00000541301		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
intron-intron	ENST00000494088	ENST00000467407		TCGA	RV	UCS	TCGA-N5-A4RA-01A	SLMAP	chr3	57743576	+	CYP11A1	chr15	74640396	-
Frame-shit	ENST00000361813	ENST00000464356		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
Frame-shit	ENST00000361813	ENST00000348159		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
Frame-shit	ENST00000361813	ENST00000353795		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
Frame-shit	ENST00000361813	ENST00000340875		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
Frame-shit	ENST00000361813	ENST00000368240		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
Frame-shit	ENST00000361813	ENST00000360595		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000368267	ENST00000464356		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000368267	ENST00000348159		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000368267	ENST00000353795		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000368267	ENST00000340875		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000368267	ENST00000368240		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000368267	ENST00000360595		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000489907	ENST00000464356		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000489907	ENST00000348159		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000489907	ENST00000353795		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000489907	ENST00000340875		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000489907	ENST00000368240		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
intron-3CDS	ENST00000489907	ENST00000360595		TCGA	RV	UCS	TCGA-N5-A4RD-01A	SMG5	chr1	156228796	-	MEF2D	chr1	156438812	-
In-frame	ENST00000327443	ENST00000548547		TCGA	RV	UCS	TCGA-N7-A59B-01A	SP1	chr12	53777406	+	IGFBP6	chr12	53494496	+
In-frame	ENST00000327443	ENST00000301464		TCGA	RV	UCS	TCGA-N7-A59B-01A	SP1	chr12	53777406	+	IGFBP6	chr12	53494496	+
5CDS-3UTR	ENST00000327443	ENST00000549628		TCGA	RV	UCS	TCGA-N7-A59B-01A	SP1	chr12	53777406	+	IGFBP6	chr12	53494496	+
In-frame	ENST00000426431	ENST00000548547		TCGA	RV	UCS	TCGA-N7-A59B-01A	SP1	chr12	53777406	+	IGFBP6	chr12	53494496	+
In-frame	ENST00000426431	ENST00000301464		TCGA	RV	UCS	TCGA-N7-A59B-01A	SP1	chr12	53777406	+	IGFBP6	chr12	53494496	+
5CDS-3UTR	ENST00000426431	ENST00000549628		TCGA	RV	UCS	TCGA-N7-A59B-01A	SP1	chr12	53777406	+	IGFBP6	chr12	53494496	+
Frame-shit	ENST00000395105	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000423167	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000323940	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000449139	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000416286	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
5UTR-3CDS	ENST00000574439	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000535552	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000563965	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000574278	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
intron-3CDS	ENST00000432245	ENST00000260361		TCGA	RV	UCS	TCGA-N5-A59F-01A	STRA6	chr15	74476197	-	NDUFAF1	chr15	41679791	-
Frame-shit	ENST00000560371	ENST00000335263		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000424963		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000322340		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000560371	ENST00000499851		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000560371	ENST00000342702		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000556807		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000558567		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000299135		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000454394		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000560371	ENST00000556511		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000560371	ENST00000557186		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000560371	ENST00000545563		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
Frame-shit	ENST00000347662	ENST00000335263		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000424963		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000322340		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000347662	ENST00000499851		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000347662	ENST00000342702		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000556807		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000558567		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000299135		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000454394		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000347662	ENST00000556511		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000347662	ENST00000557186		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000347662	ENST00000545563		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
Frame-shit	ENST00000392745	ENST00000335263		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000424963		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000322340		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000392745	ENST00000499851		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000392745	ENST00000342702		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000556807		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000558567		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000299135		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000454394		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000392745	ENST00000556511		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000392745	ENST00000557186		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000392745	ENST00000545563		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
Frame-shit	ENST00000539721	ENST00000335263		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000424963		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000322340		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000539721	ENST00000499851		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000539721	ENST00000342702		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000556807		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000558567		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000299135		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000454394		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000539721	ENST00000556511		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000539721	ENST00000557186		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000539721	ENST00000545563		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
Frame-shit	ENST00000351691	ENST00000335263		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000424963		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000322340		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000351691	ENST00000499851		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000351691	ENST00000342702		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000556807		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000558567		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000299135		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000454394		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-intron	ENST00000351691	ENST00000556511		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-3UTR	ENST00000351691	ENST00000557186		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
5CDS-5UTR	ENST00000351691	ENST00000545563		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TRAF3	chr14	103369766	+	WDR20	chr14	102661275	+
intron-3CDS	ENST00000503191	ENST00000307602		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
intron-intron	ENST00000503191	ENST00000524839		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
In-frame	ENST00000382020	ENST00000307602		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
5CDS-intron	ENST00000382020	ENST00000524839		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
In-frame	ENST00000506802	ENST00000307602		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
5CDS-intron	ENST00000506802	ENST00000524839		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
In-frame	ENST00000509380	ENST00000307602		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
5CDS-intron	ENST00000509380	ENST00000524839		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
In-frame	ENST00000503731	ENST00000307602		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
5CDS-intron	ENST00000503731	ENST00000524839		TCGA	RV	UCS	TCGA-N5-A4R8-01A	TUSC3	chr8	15398077	+	HOOK3	chr8	42819454	+
5CDS-5UTR	ENST00000263245	ENST00000476041		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	ARFGAP3	chr22	43243520	-	LSM10	chr1	36859754	-
5CDS-5UTR	ENST00000263245	ENST00000315732		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	ARFGAP3	chr22	43243520	-	LSM10	chr1	36859754	-
5CDS-5UTR	ENST00000429508	ENST00000476041		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	ARFGAP3	chr22	43243520	-	LSM10	chr1	36859754	-
5CDS-5UTR	ENST00000429508	ENST00000315732		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	ARFGAP3	chr22	43243520	-	LSM10	chr1	36859754	-
5CDS-5UTR	ENST00000437119	ENST00000476041		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	ARFGAP3	chr22	43243520	-	LSM10	chr1	36859754	-
5CDS-5UTR	ENST00000437119	ENST00000315732		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	ARFGAP3	chr22	43243520	-	LSM10	chr1	36859754	-
Frame-shit	ENST00000421745	ENST00000538303		TCGA	RV	UCS	TCGA-N6-A4V9-01A	BIRC6	chr2	32774548	+	SLC30A6	chr2	32409342	+
Frame-shit	ENST00000421745	ENST00000379343		TCGA	RV	UCS	TCGA-N6-A4V9-01A	BIRC6	chr2	32774548	+	SLC30A6	chr2	32409342	+
5CDS-5UTR	ENST00000421745	ENST00000357055		TCGA	RV	UCS	TCGA-N6-A4V9-01A	BIRC6	chr2	32774548	+	SLC30A6	chr2	32409342	+
5CDS-5UTR	ENST00000421745	ENST00000435660		TCGA	RV	UCS	TCGA-N6-A4V9-01A	BIRC6	chr2	32774548	+	SLC30A6	chr2	32409342	+
5CDS-5UTR	ENST00000421745	ENST00000282587		TCGA	RV	UCS	TCGA-N6-A4V9-01A	BIRC6	chr2	32774548	+	SLC30A6	chr2	32409342	+
5CDS-5UTR	ENST00000421745	ENST00000406369		TCGA	RV	UCS	TCGA-N6-A4V9-01A	BIRC6	chr2	32774548	+	SLC30A6	chr2	32409342	+
intron-3CDS	ENST00000329623	ENST00000373212		TCGA	RV	UCS	TCGA-ND-A4W6-01A	C2CD2	chr21	43362256	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000329623	ENST00000481106		TCGA	RV	UCS	TCGA-ND-A4W6-01A	C2CD2	chr21	43362256	-	SH3BGRL	chrX	80532483	+
In-frame	ENST00000380486	ENST00000373212		TCGA	RV	UCS	TCGA-ND-A4W6-01A	C2CD2	chr21	43362256	-	SH3BGRL	chrX	80532483	+
5CDS-3UTR	ENST00000380486	ENST00000481106		TCGA	RV	UCS	TCGA-ND-A4W6-01A	C2CD2	chr21	43362256	-	SH3BGRL	chrX	80532483	+
intron-3CDS	ENST00000478372	ENST00000373212		TCGA	RV	UCS	TCGA-ND-A4W6-01A	C2CD2	chr21	43362256	-	SH3BGRL	chrX	80532483	+
intron-3UTR	ENST00000478372	ENST00000481106		TCGA	RV	UCS	TCGA-ND-A4W6-01A	C2CD2	chr21	43362256	-	SH3BGRL	chrX	80532483	+
5CDS-5UTR	ENST00000512183	ENST00000393483		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
5CDS-intron	ENST00000512183	ENST00000410001		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
5CDS-5UTR	ENST00000512183	ENST00000355053		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
5CDS-5UTR	ENST00000512183	ENST00000539964		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
5CDS-5UTR	ENST00000512183	ENST00000542655		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
5CDS-intron	ENST00000512183	ENST00000478090		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
intron-5UTR	ENST00000465095	ENST00000393483		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
intron-intron	ENST00000465095	ENST00000410001		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
intron-5UTR	ENST00000465095	ENST00000355053		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
intron-5UTR	ENST00000465095	ENST00000539964		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
intron-5UTR	ENST00000465095	ENST00000542655		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
intron-intron	ENST00000465095	ENST00000478090		TCGA	RV	UCS	TCGA-NG-A4VU-01A	C2orf15	chr2	99804720	+	TSGA10	chr2	99743639	-
In-frame	ENST00000377047	ENST00000377067		TCGA	RV	UCS	TCGA-N5-A59E-01A	GPC6	chr13	94482798	+	GPC5	chr13	93518535	+
5CDS-intron	ENST00000377047	ENST00000483422		TCGA	RV	UCS	TCGA-N5-A59E-01A	GPC6	chr13	94482798	+	GPC5	chr13	93518535	+
In-frame	ENST00000402558	ENST00000336755		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
In-frame	ENST00000402558	ENST00000534928		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
5CDS-3UTR	ENST00000402558	ENST00000461038		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
5CDS-intron	ENST00000402558	ENST00000322831		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3CDS	ENST00000379174	ENST00000336755		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3CDS	ENST00000379174	ENST00000534928		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3UTR	ENST00000379174	ENST00000461038		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-intron	ENST00000379174	ENST00000322831		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
Frame-shit	ENST00000379166	ENST00000336755		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
Frame-shit	ENST00000379166	ENST00000534928		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
5CDS-3UTR	ENST00000379166	ENST00000461038		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
5CDS-intron	ENST00000379166	ENST00000322831		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3CDS	ENST00000345050	ENST00000336755		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3CDS	ENST00000345050	ENST00000534928		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3UTR	ENST00000345050	ENST00000461038		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-intron	ENST00000345050	ENST00000322831		TCGA	RV	UCS	TCGA-N8-A56S-01A	KIF24	chr9	34286615	-	ZCCHC7	chr9	37327796	+
intron-3CDS	ENST00000261596	ENST00000400569		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-3CDS	ENST00000261596	ENST00000356443		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-3CDS	ENST00000261596	ENST00000261606		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-intron	ENST00000261596	ENST00000582016		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-3CDS	ENST00000581568	ENST00000400569		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-3CDS	ENST00000581568	ENST00000356443		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-3CDS	ENST00000581568	ENST00000261606		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
intron-intron	ENST00000581568	ENST00000582016		TCGA	RV	UCS	TCGA-N8-A4PP-01A	LPIN2	chr18	3013085	-	MYOM1	chr18	3079340	-
In-frame	ENST00000339093	ENST00000270645		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NOSIP	chr19	50063191	-	RCN3	chr19	50040290	+
5CDS-3UTR	ENST00000339093	ENST00000593644		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NOSIP	chr19	50063191	-	RCN3	chr19	50040290	+
In-frame	ENST00000596358	ENST00000270645		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NOSIP	chr19	50063191	-	RCN3	chr19	50040290	+
5CDS-3UTR	ENST00000596358	ENST00000593644		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NOSIP	chr19	50063191	-	RCN3	chr19	50040290	+
Frame-shit	ENST00000391853	ENST00000270645		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NOSIP	chr19	50063191	-	RCN3	chr19	50040290	+
5CDS-3UTR	ENST00000391853	ENST00000593644		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	NOSIP	chr19	50063191	-	RCN3	chr19	50040290	+
intron-3CDS	ENST00000519301	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000519301	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000519301	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000519301	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000519301	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000519301	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
In-frame	ENST00000520407	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000520407	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000520407	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000520407	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000520407	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
5CDS-5UTR	ENST00000520407	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000523079	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523079	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523079	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523079	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523079	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523079	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000338921	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000338921	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000338921	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000338921	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000338921	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000338921	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000356819	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000356819	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000356819	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000356819	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000356819	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000356819	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000287845	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287845	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287845	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287845	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287845	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287845	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000341377	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000341377	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000341377	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000341377	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000341377	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000341377	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000287842	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287842	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287842	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287842	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287842	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000287842	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000521670	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000521670	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000521670	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000521670	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000521670	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000521670	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000405005	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000405005	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000405005	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000405005	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000405005	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000405005	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000520502	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000520502	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000520502	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000520502	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000520502	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000520502	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000539990	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000539990	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000539990	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000539990	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000539990	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000539990	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000523681	ENST00000341744		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523681	ENST00000395816		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523681	ENST00000347215		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523681	ENST00000265626		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523681	ENST00000395814		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-5UTR	ENST00000523681	ENST00000472841		TCGA	RV	UCS	TCGA-ND-A4WA-01A	NRG1	chr8	31498245	+	PMEPA1	chr20	56234753	-
intron-3CDS	ENST00000407215	ENST00000357424		TCGA	RV	UCS	TCGA-N8-A56S-01A	SCRN2	chr17	45915636	-	GIP	chr17	47041842	-
In-frame	ENST00000290216	ENST00000357424		TCGA	RV	UCS	TCGA-N8-A56S-01A	SCRN2	chr17	45915636	-	GIP	chr17	47041842	-
Frame-shit	ENST00000584123	ENST00000357424		TCGA	RV	UCS	TCGA-N8-A56S-01A	SCRN2	chr17	45915636	-	GIP	chr17	47041842	-
intron-5UTR	ENST00000464451	ENST00000228741		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
intron-5UTR	ENST00000464451	ENST00000552142		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
intron-intron	ENST00000464451	ENST00000549529		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000243253	ENST00000228741		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000243253	ENST00000552142		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000243253	ENST00000549529		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000424880	ENST00000228741		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000424880	ENST00000552142		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000424880	ENST00000549529		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000483956	ENST00000228741		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-5UTR	ENST00000483956	ENST00000552142		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
5CDS-intron	ENST00000483956	ENST00000549529		TCGA	RV	UCS	TCGA-NA-A4QV-01A	SEC61A1	chr3	127790525	+	ELK3	chr12	96588323	+
In-frame	ENST00000442725	ENST00000604948		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000442725	ENST00000557565		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000442725	ENST00000250377		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000442725	ENST00000321130		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000442725	ENST00000534898		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000442725	ENST00000603544		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000442725	ENST00000605870		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000442725	ENST00000603588		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000604948		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000557565		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000250377		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000321130		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000534898		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000603544		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000252595	ENST00000605870		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000252595	ENST00000603588		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000604948		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000557565		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000250377		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000321130		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000534898		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000603544		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000598424	ENST00000605870		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
5CDS-intron	ENST00000598424	ENST00000603588		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000604948		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000557565		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000250377		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000321130		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000534898		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000603544		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-3CDS	ENST00000598848	ENST00000605870		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
intron-intron	ENST00000598848	ENST00000603588		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SLC27A1	chr19	17599926	+	KIAA0391	chr14	35735933	+
In-frame	ENST00000358026	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000358026	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000358026	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000358026	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000358026	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000358026	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000358026	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000344626	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000344626	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000344626	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000344626	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000344626	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000344626	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000344626	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000429416	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000429416	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000429416	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000429416	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000429416	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000429416	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000429416	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000541122	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000541122	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000541122	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000541122	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000541122	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000541122	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000541122	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000589677	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000589677	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000589677	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000589677	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000589677	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000589677	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000589677	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000444061	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000444061	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000444061	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000444061	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000444061	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000444061	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000444061	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000590574	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000590574	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000590574	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000590574	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000590574	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000590574	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000590574	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000413806	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000413806	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000413806	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000413806	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000413806	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000413806	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000413806	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000450717	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000450717	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000450717	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000450717	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000450717	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000450717	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
5CDS-intron	ENST00000450717	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-3CDS	ENST00000538456	ENST00000585892		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-3CDS	ENST00000538456	ENST00000314646		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-3CDS	ENST00000538456	ENST00000359692		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-3CDS	ENST00000538456	ENST00000389253		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-3CDS	ENST00000538456	ENST00000355667		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-3CDS	ENST00000538456	ENST00000408974		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
intron-intron	ENST00000538456	ENST00000591819		TCGA	RV	UCS	TCGA-N5-A4RT-01A	SMARCA4	chr19	11170863	+	DNM2	chr19	10939712	+
In-frame	ENST00000432306	ENST00000373548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
5CDS-5UTR	ENST00000432306	ENST00000373541		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
5CDS-intron	ENST00000432306	ENST00000490081		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
In-frame	ENST00000393077	ENST00000373548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
5CDS-5UTR	ENST00000393077	ENST00000373541		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
5CDS-intron	ENST00000393077	ENST00000490081		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
intron-3CDS	ENST00000483122	ENST00000373548		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
intron-5UTR	ENST00000483122	ENST00000373541		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
intron-intron	ENST00000483122	ENST00000490081		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	VTI1A	chr10	114298089	+	HDAC1	chr1	32790080	+
In-frame	ENST00000508803	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000508803	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000508803	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382892	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382892	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382892	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382891	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382891	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382891	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382895	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382895	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000382895	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000482415	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000482415	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000482415	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000382888	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000382888	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
intron-3CDS	ENST00000382888	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000514045	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000514045	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000514045	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000436793	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000436793	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000436793	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000420906	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000420906	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000420906	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000503128	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000503128	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000503128	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000398261	ENST00000368559		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000398261	ENST00000368553		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000398261	ENST00000271854		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WHSC1	chr4	1902978	+	NUP210L	chr1	153984846	-
In-frame	ENST00000561648	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
In-frame	ENST00000561648	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
In-frame	ENST00000561648	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
In-frame	ENST00000561648	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000563137	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000563137	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000563137	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000563137	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000562871	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000562871	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000562871	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000562871	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
Frame-shit	ENST00000262383	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
Frame-shit	ENST00000262383	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
Frame-shit	ENST00000262383	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
Frame-shit	ENST00000262383	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000535559	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000535559	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000535559	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000535559	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000567169	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000567169	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000567169	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
intron-3CDS	ENST00000567169	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000562520	ENST00000475381		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000562520	ENST00000273512		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000562520	ENST00000538775		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
5UTR-3CDS	ENST00000562520	ENST00000543711		TCGA	RV	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49823398	-	NCEH1	chr3	172351882	-
Frame-shit	ENST00000309955	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000309955	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000309955	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000443227	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000443227	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000443227	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000341222	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000341222	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000341222	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000340870	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000340870	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000340870	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000355558	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000355558	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000355558	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000341582	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000341582	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000341582	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000342795	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000342795	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000342795	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000395148	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000395148	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000395148	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000423241	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000423241	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000423241	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000440180	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000440180	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000440180	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000457277	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000457277	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000457277	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000494258	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000494258	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000494258	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000479953	ENST00000237889		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000479953	ENST00000433898		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
Frame-shit	ENST00000479953	ENST00000454214		TCGA	RV	UCS	TCGA-QN-A5NN-01A	CFLAR	chr2	202014558	+	NDUFB3	chr2	201950182	+
intron-intron	ENST00000381395	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381395	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381406	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381406	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000416167	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000416167	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000300632	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000300632	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000434045	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000434045	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381392	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381392	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381389	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381389	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000418738	ENST00000484427		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
intron-intron	ENST00000418738	ENST00000371764		TCGA	RV	UCS	TCGA-N5-A4R8-01A	IGF2	chr11	2150348	-	DDX27	chr20	47849303	+
Frame-shit	ENST00000505658	ENST00000397527		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000505658	ENST00000342580		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000505658	ENST00000476146		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000505658	ENST00000397524		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
Frame-shit	ENST00000393227	ENST00000397527		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000393227	ENST00000342580		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000393227	ENST00000476146		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000393227	ENST00000397524		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-3CDS	ENST00000311571	ENST00000397527		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-intron	ENST00000311571	ENST00000342580		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-intron	ENST00000311571	ENST00000476146		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-intron	ENST00000311571	ENST00000397524		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
Frame-shit	ENST00000240304	ENST00000397527		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000240304	ENST00000342580		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000240304	ENST00000476146		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000240304	ENST00000397524		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
Frame-shit	ENST00000544170	ENST00000397527		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000544170	ENST00000342580		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000544170	ENST00000476146		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5CDS-intron	ENST00000544170	ENST00000397524		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-3CDS	ENST00000503798	ENST00000397527		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-intron	ENST00000503798	ENST00000342580		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-intron	ENST00000503798	ENST00000476146		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
intron-intron	ENST00000503798	ENST00000397524		TCGA	RV	UCS	TCGA-N8-A56S-01A	LUC7L3	chr17	48824063	+	CEP250	chr20	34078463	+
5UTR-3CDS	ENST00000355630	ENST00000538935		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000355630	ENST00000359570		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000355630	ENST00000450745		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000355630	ENST00000455936		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-intron	ENST00000355630	ENST00000474278		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000396617	ENST00000538935		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000396617	ENST00000359570		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000396617	ENST00000450745		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000396617	ENST00000455936		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-intron	ENST00000396617	ENST00000474278		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000402042	ENST00000538935		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000402042	ENST00000359570		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000402042	ENST00000450745		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000402042	ENST00000455936		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-intron	ENST00000402042	ENST00000474278		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000466278	ENST00000538935		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000466278	ENST00000359570		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000466278	ENST00000450745		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-3CDS	ENST00000466278	ENST00000455936		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
5UTR-intron	ENST00000466278	ENST00000474278		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000407029	ENST00000538935		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000407029	ENST00000359570		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000407029	ENST00000450745		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000407029	ENST00000455936		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-intron	ENST00000407029	ENST00000474278		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000402630	ENST00000538935		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000402630	ENST00000359570		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000402630	ENST00000450745		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000402630	ENST00000455936		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-intron	ENST00000402630	ENST00000474278		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MKL1	chr22	40948110	-	INPP5D	chr2	234077951	+
intron-3CDS	ENST00000531326	ENST00000261726		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PTPN11	chr12	112910844	+	CUX2	chr12	111779584	+
intron-intron	ENST00000531326	ENST00000551604		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PTPN11	chr12	112910844	+	CUX2	chr12	111779584	+
In-frame	ENST00000392597	ENST00000261726		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PTPN11	chr12	112910844	+	CUX2	chr12	111779584	+
5CDS-intron	ENST00000392597	ENST00000551604		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PTPN11	chr12	112910844	+	CUX2	chr12	111779584	+
In-frame	ENST00000351677	ENST00000261726		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PTPN11	chr12	112910844	+	CUX2	chr12	111779584	+
5CDS-intron	ENST00000351677	ENST00000551604		TCGA	RV	UCS	TCGA-N6-A4VG-01A	PTPN11	chr12	112910844	+	CUX2	chr12	111779584	+
Frame-shit	ENST00000315082	ENST00000421184		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723130	+	DPEP1	chr16	89704040	+
Frame-shit	ENST00000315082	ENST00000393092		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723130	+	DPEP1	chr16	89704040	+
Frame-shit	ENST00000315082	ENST00000261615		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723130	+	DPEP1	chr16	89704040	+
intron-3CDS	ENST00000569943	ENST00000421184		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723130	+	DPEP1	chr16	89704040	+
intron-3CDS	ENST00000569943	ENST00000393092		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723130	+	DPEP1	chr16	89704040	+
intron-3CDS	ENST00000569943	ENST00000261615		TCGA	RV	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723130	+	DPEP1	chr16	89704040	+
Frame-shit	ENST00000337137	ENST00000355272		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000337137	ENST00000356926		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
In-frame	ENST00000337137	ENST00000350812		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000337137	ENST00000345016		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000337137	ENST00000590683		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000380995	ENST00000355272		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000380995	ENST00000356926		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000380995	ENST00000350812		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000380995	ENST00000345016		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-intron	ENST00000380995	ENST00000590683		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000407381	ENST00000355272		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000407381	ENST00000356926		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
In-frame	ENST00000407381	ENST00000350812		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000407381	ENST00000345016		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000407381	ENST00000590683		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000355704	ENST00000355272		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000355704	ENST00000356926		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
In-frame	ENST00000355704	ENST00000350812		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000355704	ENST00000345016		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000355704	ENST00000590683		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000472791	ENST00000355272		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000472791	ENST00000356926		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000472791	ENST00000350812		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-3CDS	ENST00000472791	ENST00000345016		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
intron-intron	ENST00000472791	ENST00000590683		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000406733	ENST00000355272		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000406733	ENST00000356926		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
In-frame	ENST00000406733	ENST00000350812		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000406733	ENST00000345016		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
5CDS-intron	ENST00000406733	ENST00000590683		TCGA	RV	UCS	TCGA-NA-A4R1-01A	TBC1D22A	chr22	47433094	+	AP3D1	chr19	2102267	-
Frame-shit	ENST00000305533	ENST00000469224		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000305533	ENST00000394965		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000305533	ENST00000310271		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000305533	ENST00000484952		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000499914	ENST00000469224		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000499914	ENST00000394965		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000499914	ENST00000310271		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000499914	ENST00000484952		TCGA	RV	UCS	TCGA-N8-A4PI-01A	TWF2	chr3	52273008	-	ALAS1	chr3	52242099	+
Frame-shit	ENST00000420843	ENST00000336898		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000376282		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000529095		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000526177		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000533784		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000529721		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000533805		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000420843	ENST00000443276		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
Frame-shit	ENST00000393505	ENST00000336898		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000376282		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000529095		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000526177		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000533784		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000529721		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000533805		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000393505	ENST00000443276		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
Frame-shit	ENST00000360025	ENST00000336898		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000376282		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000529095		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000526177		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000533784		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000529721		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000533805		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5CDS-intron	ENST00000360025	ENST00000443276		TCGA	RV	UCS	TCGA-N8-A56S-01A	ARRB1	chr11	74998359	-	GDPD5	chr11	75173934	-
5UTR-3CDS	ENST00000381947	ENST00000381815		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
5UTR-3CDS	ENST00000381947	ENST00000381831		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
5UTR-3CDS	ENST00000381947	ENST00000381839		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
5UTR-3CDS	ENST00000381947	ENST00000543717		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
5UTR-intron	ENST00000381947	ENST00000361093		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
5UTR-intron	ENST00000381947	ENST00000497313		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000314399	ENST00000381815		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000314399	ENST00000381831		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000314399	ENST00000381839		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000314399	ENST00000543717		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-intron	ENST00000314399	ENST00000361093		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-intron	ENST00000314399	ENST00000497313		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000402202	ENST00000381815		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000402202	ENST00000381831		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000402202	ENST00000381839		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-3CDS	ENST00000402202	ENST00000543717		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-intron	ENST00000402202	ENST00000361093		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
intron-intron	ENST00000402202	ENST00000497313		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC28	chr21	34863909	-	GART	chr21	34878411	-
Frame-shit	ENST00000504595	ENST00000280326		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000504595	ENST00000503026		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000504595	ENST00000515390		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000504595	ENST00000515676		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000504595	ENST00000506600		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000510662	ENST00000280326		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000510662	ENST00000503026		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000510662	ENST00000515390		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000510662	ENST00000515676		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000510662	ENST00000506600		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000329673	ENST00000280326		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000329673	ENST00000503026		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000329673	ENST00000515390		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000329673	ENST00000515676		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
intron-intron	ENST00000329673	ENST00000506600		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	FBXL7	chr5	15939900	+	CCT5	chr5	10250033	+
In-frame	ENST00000155840	ENST00000311604		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
In-frame	ENST00000155840	ENST00000381775		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
5CDS-5UTR	ENST00000155840	ENST00000405957		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
5CDS-5UTR	ENST00000155840	ENST00000406638		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
5CDS-intron	ENST00000155840	ENST00000485341		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
5CDS-intron	ENST00000155840	ENST00000599825		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000335475	ENST00000311604		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000335475	ENST00000381775		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000335475	ENST00000405957		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000335475	ENST00000406638		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-intron	ENST00000335475	ENST00000485341		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-intron	ENST00000335475	ENST00000599825		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000526095	ENST00000311604		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-3CDS	ENST00000526095	ENST00000381775		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000526095	ENST00000405957		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-5UTR	ENST00000526095	ENST00000406638		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-intron	ENST00000526095	ENST00000485341		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
intron-intron	ENST00000526095	ENST00000599825		TCGA	RV	UCS	TCGA-NF-A4WX-01A	KCNQ1	chr11	2466714	+	LSP1	chr11	1901317	+
Frame-shit	ENST00000341724	ENST00000357410		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000341724	ENST00000327619		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000341724	ENST00000497428		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000341724	ENST00000317304		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000372004	ENST00000357410		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000372004	ENST00000327619		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000372004	ENST00000497428		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000372004	ENST00000317304		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371998	ENST00000357410		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371998	ENST00000327619		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371998	ENST00000497428		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371998	ENST00000317304		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371997	ENST00000357410		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000371997	ENST00000327619		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371997	ENST00000497428		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
5CDS-intron	ENST00000371997	ENST00000317304		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
intron-3CDS	ENST00000497292	ENST00000357410		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
intron-3CDS	ENST00000497292	ENST00000327619		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
intron-intron	ENST00000497292	ENST00000497428		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
intron-intron	ENST00000497292	ENST00000317304		TCGA	RV	UCS	TCGA-N5-A4RO-01A	NCOA3	chr20	46254225	+	EYA2	chr20	45700824	+
Frame-shit	ENST00000542507	ENST00000373871		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000542507	ENST00000436342		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000542507	ENST00000373864		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000542507	ENST00000540618		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000542507	ENST00000545175		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000542507	ENST00000373863		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
5CDS-intron	ENST00000542507	ENST00000471498		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000373812	ENST00000373871		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000373812	ENST00000436342		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000373812	ENST00000373864		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000373812	ENST00000540618		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000373812	ENST00000545175		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000373812	ENST00000373863		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
5CDS-intron	ENST00000373812	ENST00000471498		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000541996	ENST00000373871		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000541996	ENST00000436342		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000541996	ENST00000373864		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000541996	ENST00000540618		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000541996	ENST00000545175		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
Frame-shit	ENST00000541996	ENST00000373863		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
5CDS-intron	ENST00000541996	ENST00000471498		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-3CDS	ENST00000478283	ENST00000373871		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-3CDS	ENST00000478283	ENST00000436342		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-3CDS	ENST00000478283	ENST00000373864		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-3CDS	ENST00000478283	ENST00000540618		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-3CDS	ENST00000478283	ENST00000545175		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-3CDS	ENST00000478283	ENST00000373863		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
3UTR-intron	ENST00000478283	ENST00000471498		TCGA	RV	UCS	TCGA-N6-A4VG-01A	YTHDF2	chr1	29070498	+	EYA3	chr1	28304985	-
5CDS-intron	ENST00000608083	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000608083	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377855	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000545482	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000361521	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377842	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
5CDS-intron	ENST00000377845	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
intron-intron	ENST00000541130	ENST00000465508		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
intron-intron	ENST00000541130	ENST00000349363		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
intron-intron	ENST00000541130	ENST00000377577		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
intron-intron	ENST00000541130	ENST00000294401		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
intron-intron	ENST00000541130	ENST00000542246		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
intron-intron	ENST00000541130	ENST00000377573		TCGA	RV	UCS	TCGA-N8-A56S-01A	ACOT7	chr1	6341162	-	DNAJC11	chr1	6727870	-
Frame-shit	ENST00000338110	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000338110	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000338110	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000338110	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000338110	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000395248	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000395248	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000395248	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000395248	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000395248	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000575627	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000575627	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000575627	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000575627	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000575627	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
In-frame	ENST00000566897	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000566897	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000566897	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000566897	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000566897	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000569545	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569545	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569545	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569545	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569545	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000563060	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000563060	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000563060	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000563060	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000563060	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000412304	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412304	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412304	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412304	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000412304	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-3CDS	ENST00000564546	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000564546	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000564546	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000564546	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000564546	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000564595	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000564595	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000564595	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000564595	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000564595	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000569798	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569798	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569798	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569798	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000569798	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000395240	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395240	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395240	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395240	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
intron-intron	ENST00000395240	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VD-01A	ALDOA	chr16	30081734	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000264607	ENST00000316997		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
5CDS-intron	ENST00000264607	ENST00000444524		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
5CDS-intron	ENST00000264607	ENST00000409864		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
3UTR-3CDS	ENST00000469885	ENST00000316997		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
3UTR-intron	ENST00000469885	ENST00000444524		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
3UTR-intron	ENST00000469885	ENST00000409864		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
Frame-shit	ENST00000409297	ENST00000316997		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
5CDS-intron	ENST00000409297	ENST00000444524		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
5CDS-intron	ENST00000409297	ENST00000409864		TCGA	RV	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RBM44	chr2	238742640	+
intron-3CDS	ENST00000465409	ENST00000372371		TCGA	RV	UCS	TCGA-N5-A59F-01A	CUEDC2	chr10	104192283	-	POLR3A	chr10	79740031	-
intron-intron	ENST00000465409	ENST00000484760		TCGA	RV	UCS	TCGA-N5-A59F-01A	CUEDC2	chr10	104192283	-	POLR3A	chr10	79740031	-
5UTR-3CDS	ENST00000369937	ENST00000372371		TCGA	RV	UCS	TCGA-N5-A59F-01A	CUEDC2	chr10	104192283	-	POLR3A	chr10	79740031	-
5UTR-intron	ENST00000369937	ENST00000484760		TCGA	RV	UCS	TCGA-N5-A59F-01A	CUEDC2	chr10	104192283	-	POLR3A	chr10	79740031	-
5CDS-intron	ENST00000327921	ENST00000557165		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000327921	ENST00000389879		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000327921	ENST00000555049		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000262233	ENST00000557165		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000262233	ENST00000389879		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000262233	ENST00000555049		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000334192	ENST00000557165		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000334192	ENST00000389879		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
5CDS-intron	ENST00000334192	ENST00000555049		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
intron-intron	ENST00000556758	ENST00000557165		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
intron-intron	ENST00000556758	ENST00000389879		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
intron-intron	ENST00000556758	ENST00000555049		TCGA	RV	UCS	TCGA-N6-A4VE-01A	EML1	chr14	100367376	+	CCNK	chr14	99973413	+
intron-3CDS	ENST00000264674	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000264674	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000264674	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000264674	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000392736	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000392736	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000392736	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000392736	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000464456	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000464456	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000464456	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000464456	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000472280	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000472280	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000472280	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000472280	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
Frame-shit	ENST00000494292	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
Frame-shit	ENST00000494292	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
Frame-shit	ENST00000494292	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
5CDS-5UTR	ENST00000494292	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000468789	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000468789	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000468789	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000468789	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000460814	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000460814	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000460814	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000460814	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000433243	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000433243	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-3CDS	ENST00000433243	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
intron-5UTR	ENST00000433243	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
5UTR-3CDS	ENST00000485957	ENST00000475381		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
5UTR-3CDS	ENST00000485957	ENST00000273512		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
5UTR-3CDS	ENST00000485957	ENST00000538775		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
5UTR-5UTR	ENST00000485957	ENST00000543711		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	MECOM	chr3	169381124	-	NCEH1	chr3	172363482	-
Frame-shit	ENST00000391875	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
Frame-shit	ENST00000391875	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-3UTR	ENST00000391875	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-intron	ENST00000391875	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
Frame-shit	ENST00000281701	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
Frame-shit	ENST00000281701	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-3UTR	ENST00000281701	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-intron	ENST00000281701	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
Frame-shit	ENST00000469075	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
Frame-shit	ENST00000469075	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-3UTR	ENST00000469075	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-intron	ENST00000469075	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3CDS	ENST00000482491	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3CDS	ENST00000482491	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3UTR	ENST00000482491	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-intron	ENST00000482491	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3CDS	ENST00000340871	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3CDS	ENST00000340871	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3UTR	ENST00000340871	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-intron	ENST00000340871	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
In-frame	ENST00000361463	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
In-frame	ENST00000361463	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-3UTR	ENST00000361463	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5CDS-intron	ENST00000361463	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3CDS	ENST00000468673	ENST00000414423		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3CDS	ENST00000468673	ENST00000295024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-3UTR	ENST00000468673	ENST00000366852		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
intron-intron	ENST00000468673	ENST00000479727		TCGA	RV	UCS	TCGA-N6-A4VG-01A	NVL	chr1	224499502	-	WDR26	chr1	224577562	-
5UTR-5UTR	ENST00000257821	ENST00000311956		TCGA	RV	UCS	TCGA-NA-A4R1-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000323180	ENST00000311956		TCGA	RV	UCS	TCGA-NA-A4R1-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
5UTR-5UTR	ENST00000418153	ENST00000311956		TCGA	RV	UCS	TCGA-NA-A4R1-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
intron-5UTR	ENST00000527753	ENST00000311956		TCGA	RV	UCS	TCGA-NA-A4R1-01A	PHF21A	chr11	46142486	-	ARHGAP1	chr11	46717706	-
Frame-shit	ENST00000262741	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000262741	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
Frame-shit	ENST00000372006	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000372006	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
In-frame	ENST00000340332	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000340332	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
In-frame	ENST00000420542	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000420542	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
In-frame	ENST00000354242	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000354242	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
Frame-shit	ENST00000540385	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000540385	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
Frame-shit	ENST00000423209	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000423209	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
intron-3CDS	ENST00000488808	ENST00000343304		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
intron-5UTR	ENST00000488808	ENST00000472710		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	PIK3R3	chr1	46543187	-	LRRC41	chr1	46752171	-
5CDS-5UTR	ENST00000373019	ENST00000372844		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SF3A3	chr1	38425792	-	HPCAL4	chr1	40150283	-
5CDS-5UTR	ENST00000448721	ENST00000372844		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SF3A3	chr1	38425792	-	HPCAL4	chr1	40150283	-
intron-5UTR	ENST00000489537	ENST00000372844		TCGA	RV	UCS	TCGA-NF-A4WX-01A	SF3A3	chr1	38425792	-	HPCAL4	chr1	40150283	-
Frame-shit	ENST00000401084	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000401084	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000401084	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000401084	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000264203	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000264203	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000264203	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000264203	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375142	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000375142	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375142	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000375142	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000433834	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000433834	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000433834	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000433834	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264202	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
Frame-shit	ENST00000264202	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264202	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264202	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000482808	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-3CDS	ENST00000482808	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000482808	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5UTR-5UTR	ENST00000482808	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000375144	ENST00000294543		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-3CDS	ENST00000375144	ENST00000375127		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000375144	ENST00000489814		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
intron-5UTR	ENST00000375144	ENST00000375122		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	CAPZB	chr1	19811930	-	TMCO4	chr1	20027378	-
5CDS-5UTR	ENST00000264057	ENST00000491545		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000264057	ENST00000435456		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000264057	ENST00000402844		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000264057	ENST00000544408		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000264057	ENST00000542412		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000409813	ENST00000491545		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000409813	ENST00000435456		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000409813	ENST00000402844		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000409813	ENST00000544408		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
5CDS-5UTR	ENST00000409813	ENST00000542412		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489613	ENST00000491545		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489613	ENST00000435456		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489613	ENST00000402844		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489613	ENST00000544408		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
intron-5UTR	ENST00000489613	ENST00000542412		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	DGKD	chr2	234299129	+	SLC25A17	chr22	41175129	-
In-frame	ENST00000378891	ENST00000263036		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
In-frame	ENST00000378891	ENST00000378764		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378891	ENST00000482140		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378891	ENST00000378757		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378891	ENST00000378752		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378891	ENST00000378748		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378891	ENST00000378747		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
In-frame	ENST00000378888	ENST00000263036		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
In-frame	ENST00000378888	ENST00000378764		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378888	ENST00000482140		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378888	ENST00000378757		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378888	ENST00000378752		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378888	ENST00000378748		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
5CDS-3UTR	ENST00000378888	ENST00000378747		TCGA	RV	UCS	TCGA-NA-A4R0-01A	DVL1	chr1	1284276	-	OPTN	chr10	13154453	+
intron-3CDS	ENST00000593685	ENST00000420980		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000593685	ENST00000412732		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000593685	ENST00000416611		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000593685	ENST00000414789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000593685	ENST00000355526		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000593685	ENST00000456296		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-3CDS	ENST00000323039	ENST00000420980		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000323039	ENST00000412732		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000323039	ENST00000416611		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000323039	ENST00000414789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000323039	ENST00000355526		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000323039	ENST00000456296		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-3CDS	ENST00000348817	ENST00000420980		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000348817	ENST00000412732		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000348817	ENST00000416611		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000348817	ENST00000414789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000348817	ENST00000355526		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000348817	ENST00000456296		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-3CDS	ENST00000597639	ENST00000420980		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000597639	ENST00000412732		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000597639	ENST00000416611		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000597639	ENST00000414789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000597639	ENST00000355526		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
intron-5UTR	ENST00000597639	ENST00000456296		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-3CDS	ENST00000430012	ENST00000420980		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000430012	ENST00000412732		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000430012	ENST00000416611		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000430012	ENST00000414789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000430012	ENST00000355526		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000430012	ENST00000456296		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-3CDS	ENST00000601972	ENST00000420980		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000601972	ENST00000412732		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000601972	ENST00000416611		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000601972	ENST00000414789		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000601972	ENST00000355526		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5UTR-5UTR	ENST00000601972	ENST00000456296		TCGA	RV	UCS	TCGA-NA-A4QV-01A	DYRK1B	chr19	40324663	-	DPF1	chr19	38713348	-
5CDS-5UTR	ENST00000261349	ENST00000228862		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
5CDS-intron	ENST00000261349	ENST00000298573		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
5CDS-intron	ENST00000261349	ENST00000545864		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
5CDS-5UTR	ENST00000543091	ENST00000228862		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
5CDS-intron	ENST00000543091	ENST00000298573		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
5CDS-intron	ENST00000543091	ENST00000545864		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
intron-5UTR	ENST00000540415	ENST00000228862		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000540415	ENST00000298573		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
intron-intron	ENST00000540415	ENST00000545864		TCGA	RV	UCS	TCGA-N8-A56S-01A	LRP6	chr12	12397196	-	DUSP16	chr12	12674397	-
Frame-shit	ENST00000372189	ENST00000357028		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
Frame-shit	ENST00000372189	ENST00000292035		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
5CDS-intron	ENST00000372189	ENST00000474263		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
Frame-shit	ENST00000372195	ENST00000357028		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
Frame-shit	ENST00000372195	ENST00000292035		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
5CDS-intron	ENST00000372195	ENST00000474263		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
Frame-shit	ENST00000372190	ENST00000357028		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
Frame-shit	ENST00000372190	ENST00000292035		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
5CDS-intron	ENST00000372190	ENST00000474263		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
intron-3CDS	ENST00000481260	ENST00000357028		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
intron-3CDS	ENST00000481260	ENST00000292035		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
intron-intron	ENST00000481260	ENST00000474263		TCGA	RV	UCS	TCGA-NA-A4R1-01A	RAPGEF1	chr9	134471685	-	MED27	chr9	134759486	-
In-frame	ENST00000216373	ENST00000382865		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
In-frame	ENST00000216373	ENST00000511885		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
5CDS-5UTR	ENST00000216373	ENST00000515357		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
In-frame	ENST00000543680	ENST00000382865		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
In-frame	ENST00000543680	ENST00000511885		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
5CDS-5UTR	ENST00000543680	ENST00000515357		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
intron-3CDS	ENST00000555794	ENST00000382865		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
intron-3CDS	ENST00000555794	ENST00000511885		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
intron-5UTR	ENST00000555794	ENST00000515357		TCGA	RV	UCS	TCGA-NA-A5I1-01A	SOS2	chr14	50697915	-	POLN	chr4	2176478	-
5UTR-3CDS	ENST00000393328	ENST00000521400		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000393328	ENST00000517536		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000393328	ENST00000521780		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000393328	ENST00000380476		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000393328	ENST00000518379		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3UTR	ENST00000393328	ENST00000520666		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000393331	ENST00000521400		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000393331	ENST00000517536		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000393331	ENST00000521780		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000393331	ENST00000380476		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000393331	ENST00000518379		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3UTR	ENST00000393331	ENST00000520666		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000347630	ENST00000521400		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000347630	ENST00000517536		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000347630	ENST00000521780		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000347630	ENST00000380476		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000347630	ENST00000518379		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3UTR	ENST00000347630	ENST00000520666		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000504102	ENST00000521400		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000504102	ENST00000517536		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000504102	ENST00000521780		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000504102	ENST00000380476		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000504102	ENST00000518379		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3UTR	ENST00000504102	ENST00000520666		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
intron-3CDS	ENST00000503676	ENST00000521400		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
intron-3CDS	ENST00000503676	ENST00000517536		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
intron-intron	ENST00000503676	ENST00000521780		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
intron-intron	ENST00000503676	ENST00000380476		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
intron-intron	ENST00000503676	ENST00000518379		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
intron-3UTR	ENST00000503676	ENST00000520666		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000513080	ENST00000521400		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3CDS	ENST00000513080	ENST00000517536		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000513080	ENST00000521780		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000513080	ENST00000380476		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-intron	ENST00000513080	ENST00000518379		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
5UTR-3UTR	ENST00000513080	ENST00000520666		TCGA	RV	UCS	TCGA-ND-A4WF-01A	SPOP	chr17	47755295	-	EPHX2	chr8	27358443	+
In-frame	ENST00000261600	ENST00000330266		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
In-frame	ENST00000261600	ENST00000405975		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
In-frame	ENST00000261600	ENST00000415080		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
In-frame	ENST00000261600	ENST00000405006		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5CDS-5UTR	ENST00000261600	ENST00000485353		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5CDS-intron	ENST00000261600	ENST00000402360		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5CDS-intron	ENST00000261600	ENST00000404790		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5CDS-intron	ENST00000261600	ENST00000403856		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-3CDS	ENST00000582313	ENST00000330266		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-3CDS	ENST00000582313	ENST00000405975		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-3CDS	ENST00000582313	ENST00000415080		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-3CDS	ENST00000582313	ENST00000405006		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-5UTR	ENST00000582313	ENST00000485353		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-intron	ENST00000582313	ENST00000402360		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-intron	ENST00000582313	ENST00000404790		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
5UTR-intron	ENST00000582313	ENST00000403856		TCGA	RV	UCS	TCGA-N8-A4PO-01A	THOC1	chr18	252539	-	THADA	chr2	43655370	-
Frame-shit	ENST00000378312	ENST00000337672		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	TMX2	chr11	57480279	+	MED19	chr11	57472701	-
Frame-shit	ENST00000378312	ENST00000431606		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	TMX2	chr11	57480279	+	MED19	chr11	57472701	-
Frame-shit	ENST00000278422	ENST00000337672		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	TMX2	chr11	57480279	+	MED19	chr11	57472701	-
Frame-shit	ENST00000278422	ENST00000431606		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	TMX2	chr11	57480279	+	MED19	chr11	57472701	-
Frame-shit	ENST00000262144	ENST00000283882		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WDR59	chr16	74955845	-	CFDP1	chr16	75339080	-
5CDS-intron	ENST00000262144	ENST00000564286		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WDR59	chr16	74955845	-	CFDP1	chr16	75339080	-
intron-3CDS	ENST00000562331	ENST00000283882		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WDR59	chr16	74955845	-	CFDP1	chr16	75339080	-
intron-intron	ENST00000562331	ENST00000564286		TCGA	RV	UCS	TCGA-N5-A4RA-01A	WDR59	chr16	74955845	-	CFDP1	chr16	75339080	-
5UTR-5UTR	ENST00000473039	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000473039	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000473039	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373624	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373624	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373624	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000542603	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000542603	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5UTR-5UTR	ENST00000542603	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000394219	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000394219	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000394219	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373620	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373620	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373620	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000394215	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000394215	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000394215	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373618	ENST00000498485		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373618	ENST00000259457		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
5CDS-5UTR	ENST00000373618	ENST00000536392		TCGA	RV	UCS	TCGA-N5-A4RT-01A	DENND1A	chr9	126414292	-	PSMB7	chr9	127146935	-
In-frame	ENST00000328111	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000328111	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000348286	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000348286	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000353855	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000353855	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000443239	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000443239	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000344505	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000344505	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000375623	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000375623	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000456297	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000456297	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000201963	ENST00000278980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000201963	ENST00000446419		TCGA	RV	UCS	TCGA-NA-A5I1-01A	DNMT3B	chr20	31369220	+	COMMD7	chr20	31315949	-
In-frame	ENST00000358432	ENST00000370915		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EPHA2	chr1	16474873	-	LSM14B	chr20	60699673	+
In-frame	ENST00000358432	ENST00000253001		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EPHA2	chr1	16474873	-	LSM14B	chr20	60699673	+
In-frame	ENST00000358432	ENST00000279068		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EPHA2	chr1	16474873	-	LSM14B	chr20	60699673	+
In-frame	ENST00000461614	ENST00000370915		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EPHA2	chr1	16474873	-	LSM14B	chr20	60699673	+
In-frame	ENST00000461614	ENST00000253001		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EPHA2	chr1	16474873	-	LSM14B	chr20	60699673	+
In-frame	ENST00000461614	ENST00000279068		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EPHA2	chr1	16474873	-	LSM14B	chr20	60699673	+
Frame-shit	ENST00000255559	ENST00000084798		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC39A11	chr17	71080947	-	CA11	chr19	49143537	-
Frame-shit	ENST00000542342	ENST00000084798		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC39A11	chr17	71080947	-	CA11	chr19	49143537	-
intron-3CDS	ENST00000579988	ENST00000084798		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC39A11	chr17	71080947	-	CA11	chr19	49143537	-
Frame-shit	ENST00000579732	ENST00000084798		TCGA	RV	UCS	TCGA-N8-A56S-01A	SLC39A11	chr17	71080947	-	CA11	chr19	49143537	-
Frame-shit	ENST00000186436	ENST00000332509		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
Frame-shit	ENST00000186436	ENST00000335539		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
Frame-shit	ENST00000186436	ENST00000402064		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
5CDS-intron	ENST00000186436	ENST00000490473		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
5CDS-intron	ENST00000186436	ENST00000436218		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
5CDS-intron	ENST00000186436	ENST00000447598		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
5CDS-intron	ENST00000186436	ENST00000435484		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
5CDS-intron	ENST00000186436	ENST00000417303		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-3CDS	ENST00000425805	ENST00000332509		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-3CDS	ENST00000425805	ENST00000335539		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-3CDS	ENST00000425805	ENST00000402064		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-intron	ENST00000425805	ENST00000490473		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-intron	ENST00000425805	ENST00000436218		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-intron	ENST00000425805	ENST00000447598		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-intron	ENST00000425805	ENST00000435484		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
intron-intron	ENST00000425805	ENST00000417303		TCGA	RV	UCS	TCGA-NF-A4WX-01A	TMEM131	chr2	98408849	-	PLA2G6	chr22	38531091	-
In-frame	ENST00000304636	ENST00000369002		TCGA	RV	UCS	TCGA-NA-A5I1-01A	COL3A1	chr2	189877472	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000304636	ENST00000460009		TCGA	RV	UCS	TCGA-NA-A5I1-01A	COL3A1	chr2	189877472	+	SEC63	chr6	108214782	-
In-frame	ENST00000317840	ENST00000369002		TCGA	RV	UCS	TCGA-NA-A5I1-01A	COL3A1	chr2	189877472	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000317840	ENST00000460009		TCGA	RV	UCS	TCGA-NA-A5I1-01A	COL3A1	chr2	189877472	+	SEC63	chr6	108214782	-
In-frame	ENST00000367160	ENST00000367306		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
In-frame	ENST00000367160	ENST00000340006		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367160	ENST00000531916		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367160	ENST00000532460		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367160	ENST00000533432		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367160	ENST00000526723		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367160	ENST00000458271		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
In-frame	ENST00000367161	ENST00000367306		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
In-frame	ENST00000367161	ENST00000340006		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367161	ENST00000531916		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367161	ENST00000532460		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367161	ENST00000533432		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367161	ENST00000526723		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367161	ENST00000458271		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
In-frame	ENST00000367162	ENST00000367306		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
In-frame	ENST00000367162	ENST00000340006		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367162	ENST00000531916		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367162	ENST00000532460		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367162	ENST00000533432		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367162	ENST00000526723		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
5CDS-intron	ENST00000367162	ENST00000458271		TCGA	RV	UCS	TCGA-N8-A56S-01A	DSTYK	chr1	205180399	-	CSRP1	chr1	201454504	-
In-frame	ENST00000300027	ENST00000317799		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
In-frame	ENST00000300027	ENST00000405867		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-intron	ENST00000300027	ENST00000537713		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-intron	ENST00000300027	ENST00000545822		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-3UTR	ENST00000300027	ENST00000494615		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
In-frame	ENST00000310775	ENST00000317799		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
In-frame	ENST00000310775	ENST00000405867		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-intron	ENST00000310775	ENST00000537713		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-intron	ENST00000310775	ENST00000545822		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-3UTR	ENST00000310775	ENST00000494615		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3CDS	ENST00000451393	ENST00000317799		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3CDS	ENST00000451393	ENST00000405867		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-intron	ENST00000451393	ENST00000537713		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-intron	ENST00000451393	ENST00000545822		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3UTR	ENST00000451393	ENST00000494615		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3CDS	ENST00000567996	ENST00000317799		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3CDS	ENST00000567996	ENST00000405867		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-intron	ENST00000567996	ENST00000537713		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-intron	ENST00000567996	ENST00000545822		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3UTR	ENST00000567996	ENST00000494615		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3CDS	ENST00000566615	ENST00000317799		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3CDS	ENST00000566615	ENST00000405867		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-intron	ENST00000566615	ENST00000537713		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-intron	ENST00000566615	ENST00000545822		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
intron-3UTR	ENST00000566615	ENST00000494615		TCGA	RV	UCS	TCGA-N5-A59F-01A	FANCI	chr15	89817535	+	HADHB	chr2	26492821	+
5CDS-intron	ENST00000549920	ENST00000484427		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000549920	ENST00000371764		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000550645	ENST00000484427		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000550645	ENST00000371764		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000552588	ENST00000484427		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000552588	ENST00000371764		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
intron-intron	ENST00000549273	ENST00000484427		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
intron-intron	ENST00000549273	ENST00000371764		TCGA	RV	UCS	TCGA-NA-A4QX-01A	RPL18	chr19	49118590	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000597363	ENST00000313899		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000597363	ENST00000353341		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000597363	ENST00000543098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000597363	ENST00000352301		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-intron	ENST00000597363	ENST00000508119		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-intron	ENST00000597363	ENST00000541060		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000596894	ENST00000313899		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000596894	ENST00000353341		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000596894	ENST00000543098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-3CDS	ENST00000596894	ENST00000352301		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-intron	ENST00000596894	ENST00000508119		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
intron-intron	ENST00000596894	ENST00000541060		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000600094	ENST00000313899		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000600094	ENST00000353341		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000600094	ENST00000543098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000600094	ENST00000352301		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
5CDS-intron	ENST00000600094	ENST00000508119		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
5CDS-intron	ENST00000600094	ENST00000541060		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000347077	ENST00000313899		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000347077	ENST00000353341		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000347077	ENST00000543098		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000347077	ENST00000352301		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
5CDS-intron	ENST00000347077	ENST00000508119		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
5CDS-intron	ENST00000347077	ENST00000541060		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ZNF546	chr19	40514472	+	HNRNPD	chr4	83280792	-
Frame-shit	ENST00000316485	ENST00000371191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000316485	ENST00000407417		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000479364		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371189		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000403491		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371187		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000485903		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371185		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000371184		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000316485	ENST00000357977		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000371158	ENST00000371191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000371158	ENST00000407417		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000479364		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371189		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000403491		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371187		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000485903		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371185		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000371184		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
5CDS-intron	ENST00000371158	ENST00000357977		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000543708	ENST00000371191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000543708	ENST00000407417		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000479364		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371189		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000403491		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371187		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000485903		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371185		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000371184		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000543708	ENST00000357977		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000545929	ENST00000371191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000545929	ENST00000407417		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000479364		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371189		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000403491		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371187		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000485903		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371185		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000371184		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000545929	ENST00000357977		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000472512	ENST00000371191		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-3CDS	ENST00000472512	ENST00000407417		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000479364		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371189		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000403491		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371187		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000485903		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371185		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000371184		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
intron-intron	ENST00000472512	ENST00000357977		TCGA	RV	UCS	TCGA-NA-A4R1-01A	INADL	chr1	62232145	+	NFIA	chr1	61920975	+
Frame-shit	ENST00000405308	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
5CDS-intron	ENST00000405308	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-3CDS	ENST00000359803	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000359803	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-3CDS	ENST00000395569	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000395569	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-3CDS	ENST00000395566	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000395566	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000533283	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
intron-intron	ENST00000533283	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
intron-3CDS	ENST00000407067	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
intron-intron	ENST00000407067	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-3CDS	ENST00000395565	ENST00000369002		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
3UTR-intron	ENST00000395565	ENST00000460009		TCGA	RV	UCS	TCGA-N6-A4VD-01A	MDK	chr11	46405349	+	SEC63	chr6	108214782	-
5CDS-5UTR	ENST00000368802	ENST00000368682		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000354650		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000229471		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000368667		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000368678		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000229470		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368802	ENST00000356013		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000538466		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368802	ENST00000476769		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000368682		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000354650		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000229471		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000368667		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000368678		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000229470		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000368805	ENST00000356013		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000538466		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000368805	ENST00000476769		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000435970	ENST00000368682		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000435970	ENST00000354650		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-intron	ENST00000435970	ENST00000229471		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000435970	ENST00000368667		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-intron	ENST00000435970	ENST00000368678		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000435970	ENST00000229470		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000435970	ENST00000356013		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-intron	ENST00000435970	ENST00000538466		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5UTR-intron	ENST00000435970	ENST00000476769		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000368682		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000354650		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000229471		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000368667		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000368678		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000229470		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-5UTR	ENST00000358835	ENST00000356013		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000538466		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
5CDS-intron	ENST00000358835	ENST00000476769		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000368682		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000354650		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000229471		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000368667		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000368678		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000229470		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-5UTR	ENST00000462119	ENST00000356013		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000538466		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
intron-intron	ENST00000462119	ENST00000476769		TCGA	RV	UCS	TCGA-N5-A4R8-01A	REV3L	chr6	111803953	-	FYN	chr6	112101838	-
In-frame	ENST00000453386	ENST00000319332		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
In-frame	ENST00000453386	ENST00000427335		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
5UTR-3CDS	ENST00000382191	ENST00000319332		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
5UTR-3CDS	ENST00000382191	ENST00000427335		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
intron-3CDS	ENST00000471134	ENST00000319332		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
intron-3CDS	ENST00000471134	ENST00000427335		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
In-frame	ENST00000342294	ENST00000319332		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
In-frame	ENST00000342294	ENST00000427335		TCGA	RV	UCS	TCGA-ND-A4WF-01A	TRA2B	chr3	185655613	-	LEPREL1	chr3	189681887	-
Frame-shit	ENST00000371721	ENST00000261776		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000371721	ENST00000571759		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000371721	ENST00000536184		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
Frame-shit	ENST00000277874	ENST00000261776		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000277874	ENST00000571759		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000277874	ENST00000536184		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
Frame-shit	ENST00000336152	ENST00000261776		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000336152	ENST00000571759		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000336152	ENST00000536184		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
Frame-shit	ENST00000371719	ENST00000261776		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000371719	ENST00000571759		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000371719	ENST00000536184		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	HTR7	chr10	92616890	-	VAC14	chr16	70796928	-
5CDS-intron	ENST00000368559	ENST00000368533		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000469717		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000330188		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000341485		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000341372		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000328159		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000271850		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000302206		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000368531		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000323144		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368559	ENST00000368530		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000368533		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000469717		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000330188		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000341485		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000341372		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000328159		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000271850		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000302206		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000368531		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000323144		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000368553	ENST00000368530		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000368533		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000469717		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000330188		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000341485		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000341372		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000328159		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000271850		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000302206		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000368531		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000323144		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
5CDS-intron	ENST00000271854	ENST00000368530		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP210L	chr1	153984720	-	TPM3	chr1	154131524	-
Frame-shit	ENST00000371497	ENST00000341197		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000371497	ENST00000423191		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000371497	ENST00000372999		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
5CDS-5UTR	ENST00000371497	ENST00000358131		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
5CDS-intron	ENST00000371497	ENST00000435864		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-3CDS	ENST00000603338	ENST00000341197		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000603338	ENST00000423191		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000603338	ENST00000372999		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000603338	ENST00000358131		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-intron	ENST00000603338	ENST00000435864		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-3CDS	ENST00000329613	ENST00000341197		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000329613	ENST00000423191		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000329613	ENST00000372999		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-5UTR	ENST00000329613	ENST00000358131		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
intron-intron	ENST00000329613	ENST00000435864		TCGA	RV	UCS	TCGA-N8-A4PN-01A	TSHZ2	chr20	51589872	+	TOX2	chr20	42602007	+
Frame-shit	ENST00000263921	ENST00000393483		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
Frame-shit	ENST00000263921	ENST00000410001		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
In-frame	ENST00000263921	ENST00000355053		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
In-frame	ENST00000263921	ENST00000539964		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
5CDS-intron	ENST00000263921	ENST00000542655		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
5CDS-intron	ENST00000263921	ENST00000478090		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
Frame-shit	ENST00000512964	ENST00000393483		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
Frame-shit	ENST00000512964	ENST00000410001		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
In-frame	ENST00000512964	ENST00000355053		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
In-frame	ENST00000512964	ENST00000539964		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
5CDS-intron	ENST00000512964	ENST00000542655		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
5CDS-intron	ENST00000512964	ENST00000478090		TCGA	RV	UCS	TCGA-N9-A4Q1-01A	CHIC2	chr4	54915122	-	TSGA10	chr2	99614684	-
3UTR-3CDS	ENST00000341267	ENST00000280326		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000341267	ENST00000503026		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000341267	ENST00000515390		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000341267	ENST00000515676		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
3UTR-intron	ENST00000341267	ENST00000506600		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
In-frame	ENST00000331224	ENST00000280326		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331224	ENST00000503026		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331224	ENST00000515390		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331224	ENST00000515676		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
5CDS-intron	ENST00000331224	ENST00000506600		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
intron-3CDS	ENST00000556051	ENST00000280326		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556051	ENST00000503026		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556051	ENST00000515390		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556051	ENST00000515676		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
intron-intron	ENST00000556051	ENST00000506600		TCGA	RV	UCS	TCGA-NG-A4VU-01A	DLK1	chr14	101201464	+	CCT5	chr5	10250033	+
Frame-shit	ENST00000439174	ENST00000355797		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000439174	ENST00000375036		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000439174	ENST00000449428		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000439174	ENST00000592148		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
5CDS-5UTR	ENST00000439174	ENST00000585519		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
5CDS-5UTR	ENST00000439174	ENST00000588114		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
5CDS-5UTR	ENST00000439174	ENST00000589082		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000541118	ENST00000355797		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000541118	ENST00000375036		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000541118	ENST00000449428		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000541118	ENST00000592148		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
5CDS-5UTR	ENST00000541118	ENST00000585519		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
5CDS-5UTR	ENST00000541118	ENST00000588114		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
5CDS-5UTR	ENST00000541118	ENST00000589082		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	GNA13	chr17	63049620	-	MXRA7	chr17	74681247	-
Frame-shit	ENST00000607016	ENST00000412155		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000373979		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000244645		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000311875		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000444780		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000373974		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000512012		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
Frame-shit	ENST00000607016	ENST00000418521		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
5CDS-5UTR	ENST00000607016	ENST00000510465		TCGA	RV	UCS	TCGA-N5-A4RU-01A	NUDT3	chr6	34360041	-	TCP11	chr6	35096959	-
In-frame	ENST00000495893	ENST00000376148		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000495893	ENST00000376145		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000434332		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000419122		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000414391		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000496344		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000455376		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000430501		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000460420		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000442947		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000421396		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000464328		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000400279		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000400285		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000383500		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000466313		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000432160		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000451911		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000480619		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000428467		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000424652		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000495893	ENST00000419623		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000494943	ENST00000376148		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000494943	ENST00000376145		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000434332		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000419122		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000414391		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000496344		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000455376		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000430501		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000460420		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000442947		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000421396		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000464328		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000400279		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000400285		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000383500		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000466313		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000432160		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000451911		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000480619		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000428467		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000424652		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000494943	ENST00000419623		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000467570	ENST00000376148		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000467570	ENST00000376145		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000434332		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000419122		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000414391		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000496344		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000455376		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000430501		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000460420		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000442947		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000421396		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000464328		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000400279		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000400285		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000383500		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000466313		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000432160		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000451911		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000480619		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000428467		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000424652		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000467570	ENST00000419623		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000474275	ENST00000376148		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
In-frame	ENST00000474275	ENST00000376145		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000434332		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000419122		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000414391		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000496344		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000455376		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000430501		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000460420		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000442947		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000421396		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000464328		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000400279		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000400285		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000383500		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000466313		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000432160		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000451911		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000480619		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000428467		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000424652		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
5CDS-intron	ENST00000474275	ENST00000419623		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-3CDS	ENST00000497658	ENST00000376148		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-3CDS	ENST00000497658	ENST00000376145		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000434332		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000419122		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000414391		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000496344		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000455376		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000430501		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000460420		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000442947		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000421396		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000464328		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000400279		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000400285		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000383500		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000466313		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000432160		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000451911		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000480619		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000428467		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000424652		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000497658	ENST00000419623		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-3CDS	ENST00000481639	ENST00000376148		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-3CDS	ENST00000481639	ENST00000376145		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000434332		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000419122		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000414391		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000496344		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000455376		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000430501		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000460420		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000442947		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000421396		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000464328		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000400279		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000400285		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000383500		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000466313		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000432160		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000451911		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000480619		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000428467		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000424652		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
intron-intron	ENST00000481639	ENST00000419623		TCGA	RV	UCS	TCGA-NA-A4QX-01A	PHC3	chr3	169889161	-	NFKBIL1	chr6	31515940	+
Frame-shit	ENST00000396981	ENST00000412327		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
Frame-shit	ENST00000396981	ENST00000335025		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
Frame-shit	ENST00000396981	ENST00000492445		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
Frame-shit	ENST00000396981	ENST00000398831		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
Frame-shit	ENST00000396981	ENST00000406385		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
Frame-shit	ENST00000396981	ENST00000456792		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5CDS-intron	ENST00000396981	ENST00000446951		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-3CDS	ENST00000572484	ENST00000412327		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-3CDS	ENST00000572484	ENST00000335025		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-3CDS	ENST00000572484	ENST00000492445		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-3CDS	ENST00000572484	ENST00000398831		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-3CDS	ENST00000572484	ENST00000406385		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-3CDS	ENST00000572484	ENST00000456792		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5UTR-intron	ENST00000572484	ENST00000446951		TCGA	RV	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	PPIL2	chr22	22024202	+
5CDS-intron	ENST00000331925	ENST00000360359		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000535627		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
5CDS-intron	ENST00000331925	ENST00000470698		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000360359		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000535627		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000573283	ENST00000470698		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000360359		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000535627		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575842	ENST00000470698		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000360359		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000535627		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-intron	ENST00000575087	ENST00000470698		TCGA	RV	UCS	TCGA-N5-A4RO-01A	ACTG1	chr17	79476999	-	ANKS1A	chr6	34977682	+
intron-3CDS	ENST00000381395	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381395	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000381406	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381406	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000416167	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000416167	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
Frame-shit	ENST00000300632	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000300632	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000434045	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000434045	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000381392	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381392	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000381389	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000381389	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000418738	ENST00000280326		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000503026		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000515390		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000515676		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
intron-intron	ENST00000418738	ENST00000506600		TCGA	RV	UCS	TCGA-N6-A4VG-01A	IGF2	chr11	2150351	-	CCT5	chr5	10250033	+
5CDS-5UTR	ENST00000374023	ENST00000539068		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374023	ENST00000536438		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374023	ENST00000357266		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000374023	ENST00000540787		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374023	ENST00000542713		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374026	ENST00000539068		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374026	ENST00000536438		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374026	ENST00000357266		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-intron	ENST00000374026	ENST00000540787		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
5CDS-5UTR	ENST00000374026	ENST00000542713		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000374021	ENST00000539068		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000374021	ENST00000536438		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000374021	ENST00000357266		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
intron-intron	ENST00000374021	ENST00000540787		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
intron-5UTR	ENST00000374021	ENST00000542713		TCGA	RV	UCS	TCGA-N6-A4VE-01A	C6orf106	chr6	34664223	-	FKBP5	chr6	35610620	-
3UTR-3CDS	ENST00000310358	ENST00000308086		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SPON1	chr11	14063201	+	THAP2	chr12	72067983	+
3UTR-intron	ENST00000310358	ENST00000547843		TCGA	RV	UCS	TCGA-N8-A4PP-01A	SPON1	chr11	14063201	+	THAP2	chr12	72067983	+
In-frame	ENST00000271332	ENST00000369939		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CELSR2	chr1	109796011	+	KIAA1324	chr1	109707121	+
In-frame	ENST00000271332	ENST00000529753		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CELSR2	chr1	109796011	+	KIAA1324	chr1	109707121	+
5CDS-intron	ENST00000271332	ENST00000369938		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CELSR2	chr1	109796011	+	KIAA1324	chr1	109707121	+
intron-3CDS	ENST00000498157	ENST00000369939		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CELSR2	chr1	109796011	+	KIAA1324	chr1	109707121	+
intron-3CDS	ENST00000498157	ENST00000529753		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CELSR2	chr1	109796011	+	KIAA1324	chr1	109707121	+
intron-intron	ENST00000498157	ENST00000369938		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CELSR2	chr1	109796011	+	KIAA1324	chr1	109707121	+
5UTR-3CDS	ENST00000264211	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000264211	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-3CDS	ENST00000400422	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000400422	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-3CDS	ENST00000602326	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000602326	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-3CDS	ENST00000374935	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000374935	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-3CDS	ENST00000374937	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000374937	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-3CDS	ENST00000536266	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-intron	ENST00000536266	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-3CDS	ENST00000374933	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-intron	ENST00000374933	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-3CDS	ENST00000544689	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-intron	ENST00000544689	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-3CDS	ENST00000356916	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000356916	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-3CDS	ENST00000374927	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
5UTR-intron	ENST00000374927	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-3CDS	ENST00000537738	ENST00000258341		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
intron-intron	ENST00000537738	ENST00000466964		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	EIF4G3	chr1	21377359	-	LAMC1	chr1	183085712	+
In-frame	ENST00000396000	ENST00000381061		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000396000	ENST00000252934		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000396000	ENST00000498009		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000396000	ENST00000402380		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000262735	ENST00000381061		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000262735	ENST00000252934		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000262735	ENST00000498009		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000262735	ENST00000402380		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000407236	ENST00000381061		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000407236	ENST00000252934		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000407236	ENST00000498009		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000407236	ENST00000402380		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
intron-3CDS	ENST00000481567	ENST00000381061		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
intron-3CDS	ENST00000481567	ENST00000252934		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
intron-intron	ENST00000481567	ENST00000498009		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
intron-intron	ENST00000481567	ENST00000402380		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000402126	ENST00000381061		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000402126	ENST00000252934		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000402126	ENST00000498009		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000402126	ENST00000402380		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000434345	ENST00000381061		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
In-frame	ENST00000434345	ENST00000252934		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000434345	ENST00000498009		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000434345	ENST00000402380		TCGA	RV	UCS	TCGA-N7-A4Y8-01A	PPARA	chr22	46594488	+	ATXN10	chr22	46238871	+
5CDS-5UTR	ENST00000358026	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000358026	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000358026	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000344626	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000344626	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000344626	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000429416	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000429416	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000429416	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000541122	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000541122	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000541122	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000589677	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000589677	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000589677	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000444061	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000444061	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000444061	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000590574	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000590574	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000590574	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000413806	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000413806	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000413806	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000450717	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000450717	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000450717	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000538456	ENST00000425013		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-5UTR	ENST00000538456	ENST00000389902		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000538456	ENST00000469375		TCGA	RV	UCS	TCGA-N6-A4VG-01A	SMARCA4	chr19	11152236	+	RNF216	chr7	5800769	-
5CDS-intron	ENST00000400337	ENST00000261531		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000400337	ENST00000554775		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000400337	ENST00000555761		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000355480	ENST00000261531		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000355480	ENST00000554775		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000355480	ENST00000555761		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000359759	ENST00000261531		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000359759	ENST00000554775		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
5CDS-intron	ENST00000359759	ENST00000555761		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
intron-intron	ENST00000459895	ENST00000261531		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
intron-intron	ENST00000459895	ENST00000554775		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
intron-intron	ENST00000459895	ENST00000555761		TCGA	RV	UCS	TCGA-N6-A4VG-01A	COL18A1	chr21	46933633	+	SNW1	chr14	78189203	-
In-frame	ENST00000355619	ENST00000373953		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
In-frame	ENST00000355619	ENST00000440666		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
In-frame	ENST00000355619	ENST00000339411		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
5CDS-intron	ENST00000355619	ENST00000482946		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
5UTR-3CDS	ENST00000477982	ENST00000373953		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
5UTR-3CDS	ENST00000477982	ENST00000440666		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
5UTR-3CDS	ENST00000477982	ENST00000339411		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
5UTR-intron	ENST00000477982	ENST00000482946		TCGA	RV	UCS	TCGA-NA-A4QV-01A	FBXL3	chr13	77589544	-	ZNF76	chr6	35259055	+
5CDS-3UTR	ENST00000263370	ENST00000602240		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-3UTR	ENST00000263370	ENST00000204005		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000545697		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000308370		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-5UTR	ENST00000263370	ENST00000396819		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
5CDS-intron	ENST00000263370	ENST00000243562		TCGA	RV	UCS	TCGA-N8-A4PL-01A	ITPKC	chr19	41231344	+	LTBP4	chr19	41110941	+
In-frame	ENST00000372577	ENST00000372648		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000372577	ENST00000539497		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
5CDS-3UTR	ENST00000372577	ENST00000466056		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
5CDS-intron	ENST00000372577	ENST00000223865		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
intron-3CDS	ENST00000550219	ENST00000372648		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
intron-3CDS	ENST00000550219	ENST00000539497		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
intron-3UTR	ENST00000550219	ENST00000466056		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
intron-intron	ENST00000550219	ENST00000223865		TCGA	RV	UCS	TCGA-N8-A56S-01A	NUP188	chr9	131721413	+	TBC1D13	chr9	131565529	+
In-frame	ENST00000261813	ENST00000270172		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
In-frame	ENST00000261813	ENST00000418993		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
5UTR-3CDS	ENST00000514611	ENST00000270172		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
5UTR-3CDS	ENST00000514611	ENST00000418993		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
intron-3CDS	ENST00000510217	ENST00000270172		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
intron-3CDS	ENST00000510217	ENST00000418993		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
In-frame	ENST00000524074	ENST00000270172		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
In-frame	ENST00000524074	ENST00000418993		TCGA	RV	UCS	TCGA-N8-A4PM-01A	PFDN1	chr5	139680001	-	DNMT3L	chr21	45666445	-
5CDS-intron	ENST00000321685	ENST00000537871		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321685	ENST00000439013		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321685	ENST00000255688		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321685	ENST00000354445		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000355040	ENST00000537871		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000355040	ENST00000439013		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000355040	ENST00000255688		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000355040	ENST00000354445		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321460	ENST00000537871		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321460	ENST00000439013		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321460	ENST00000255688		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-intron	ENST00000321460	ENST00000354445		TCGA	RV	UCS	TCGA-N8-A56S-01A	DNAJC4	chr11	63998412	+	RARRES3	chr11	63306988	+
5CDS-3UTR	ENST00000369016	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369016	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369016	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369014	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369014	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369014	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369009	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369009	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000369009	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000339643	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000339643	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000339643	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000271690	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000271690	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000271690	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000356527	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000356527	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000356527	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000503345	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000503345	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000503345	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000503241	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000503241	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000503241	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000362052	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000362052	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000362052	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000361532	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000361532	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000361532	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000361631	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000361631	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
5CDS-3UTR	ENST00000361631	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000513281	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000513281	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000513281	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000354702	ENST00000490724		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000354702	ENST00000392192		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
intron-3UTR	ENST00000354702	ENST00000368011		TCGA	RV	UCS	TCGA-N8-A4PP-01A	ENSA	chr1	150598118	-	KLHDC9	chr1	161069851	+
In-frame	ENST00000304623	ENST00000230895		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000304623	ENST00000432074		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000304623	ENST00000510546		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
In-frame	ENST00000359640	ENST00000230895		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000359640	ENST00000432074		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000359640	ENST00000510546		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
Frame-shit	ENST00000511377	ENST00000230895		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000511377	ENST00000432074		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000511377	ENST00000510546		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5UTR-3CDS	ENST00000458100	ENST00000230895		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5UTR-intron	ENST00000458100	ENST00000432074		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5UTR-intron	ENST00000458100	ENST00000510546		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
Frame-shit	ENST00000503622	ENST00000230895		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000503622	ENST00000432074		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-intron	ENST00000503622	ENST00000510546		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
intron-3CDS	ENST00000495388	ENST00000230895		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
intron-intron	ENST00000495388	ENST00000432074		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
intron-intron	ENST00000495388	ENST00000510546		TCGA	RV	UCS	TCGA-N6-A4VD-01A	CTNND2	chr5	11565056	-	DAP	chr5	10683683	-
5CDS-5UTR	ENST00000553277	ENST00000454355		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000553277	ENST00000266980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-intron	ENST00000553277	ENST00000419232		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000243077	ENST00000454355		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000243077	ENST00000266980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-intron	ENST00000243077	ENST00000419232		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000338962	ENST00000454355		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000338962	ENST00000266980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-intron	ENST00000338962	ENST00000419232		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000554174	ENST00000454355		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-5UTR	ENST00000554174	ENST00000266980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
5CDS-intron	ENST00000554174	ENST00000419232		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
intron-5UTR	ENST00000553446	ENST00000454355		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
intron-5UTR	ENST00000553446	ENST00000266980		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
intron-intron	ENST00000553446	ENST00000419232		TCGA	RV	UCS	TCGA-NA-A5I1-01A	LRP1	chr12	57522814	+	SLC39A5	chr12	56624988	+
Frame-shit	ENST00000395811	ENST00000290295		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MPRIP	chr17	16981390	+	HOXB13	chr17	46804405	-
Frame-shit	ENST00000444976	ENST00000290295		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MPRIP	chr17	16981390	+	HOXB13	chr17	46804405	-
Frame-shit	ENST00000395804	ENST00000290295		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MPRIP	chr17	16981390	+	HOXB13	chr17	46804405	-
Frame-shit	ENST00000341712	ENST00000290295		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MPRIP	chr17	16981390	+	HOXB13	chr17	46804405	-
intron-3CDS	ENST00000395806	ENST00000290295		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MPRIP	chr17	16981390	+	HOXB13	chr17	46804405	-
3UTR-3CDS	ENST00000395807	ENST00000290295		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	MPRIP	chr17	16981390	+	HOXB13	chr17	46804405	-
5UTR-3CDS	ENST00000258399	ENST00000409720		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000258399	ENST00000356853		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-5UTR	ENST00000258399	ENST00000483627		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000454775	ENST00000409720		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000454775	ENST00000356853		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-5UTR	ENST00000454775	ENST00000483627		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000415516	ENST00000409720		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000415516	ENST00000356853		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-5UTR	ENST00000415516	ENST00000483627		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-3CDS	ENST00000418019	ENST00000409720		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-3CDS	ENST00000418019	ENST00000356853		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-5UTR	ENST00000418019	ENST00000483627		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000338465	ENST00000409720		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-3CDS	ENST00000338465	ENST00000356853		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
5UTR-5UTR	ENST00000338465	ENST00000483627		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-3CDS	ENST00000475553	ENST00000409720		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-3CDS	ENST00000475553	ENST00000356853		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-5UTR	ENST00000475553	ENST00000483627		TCGA	RV	UCS	TCGA-NA-A5I1-01A	USP37	chr2	219427396	-	NHEJ1	chr2	219942928	-
intron-3CDS	ENST00000597695	ENST00000292147		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000597695	ENST00000600651		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000595607	ENST00000292147		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000595607	ENST00000600651		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000600687	ENST00000292147		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
intron-3CDS	ENST00000600687	ENST00000600651		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000315849	ENST00000292147		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
5UTR-3CDS	ENST00000315849	ENST00000600651		TCGA	RV	UCS	TCGA-N5-A4R8-01A	ZNF114	chr19	48775085	+	ETHE1	chr19	44015718	-
In-frame	ENST00000357410	ENST00000375994		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
In-frame	ENST00000357410	ENST00000375985		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
5CDS-3UTR	ENST00000357410	ENST00000468730		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
In-frame	ENST00000327619	ENST00000375994		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
In-frame	ENST00000327619	ENST00000375985		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
5CDS-3UTR	ENST00000327619	ENST00000468730		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
intron-3CDS	ENST00000497428	ENST00000375994		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
intron-3CDS	ENST00000497428	ENST00000375985		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
intron-3UTR	ENST00000497428	ENST00000468730		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
In-frame	ENST00000317304	ENST00000375994		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
In-frame	ENST00000317304	ENST00000375985		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
5CDS-3UTR	ENST00000317304	ENST00000468730		TCGA	RV	UCS	TCGA-ND-A4WF-01A	EYA2	chr20	45725807	+	MYLK2	chr20	30418622	+
In-frame	ENST00000392894	ENST00000305354		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RNF13	chr3	149589941	+	TM4SF4	chr3	149205406	+
In-frame	ENST00000344229	ENST00000305354		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RNF13	chr3	149589941	+	TM4SF4	chr3	149205406	+
5UTR-3CDS	ENST00000361785	ENST00000305354		TCGA	RV	UCS	TCGA-N5-A4RA-01A	RNF13	chr3	149589941	+	TM4SF4	chr3	149205406	+
5CDS-intron	ENST00000202017	ENST00000359676		TCGA	RV	UCS	TCGA-N6-A4VE-01A	PDRG1	chr20	30536611	-	C20orf112	chr20	31099259	-
5CDS-intron	ENST00000202017	ENST00000475781		TCGA	RV	UCS	TCGA-N6-A4VE-01A	PDRG1	chr20	30536611	-	C20orf112	chr20	31099259	-
5CDS-intron	ENST00000202017	ENST00000326071		TCGA	RV	UCS	TCGA-N6-A4VE-01A	PDRG1	chr20	30536611	-	C20orf112	chr20	31099259	-
5CDS-intron	ENST00000202017	ENST00000375677		TCGA	RV	UCS	TCGA-N6-A4VE-01A	PDRG1	chr20	30536611	-	C20orf112	chr20	31099259	-
5CDS-intron	ENST00000202017	ENST00000375678		TCGA	RV	UCS	TCGA-N6-A4VE-01A	PDRG1	chr20	30536611	-	C20orf112	chr20	31099259	-
5CDS-intron	ENST00000202017	ENST00000201961		TCGA	RV	UCS	TCGA-N6-A4VE-01A	PDRG1	chr20	30536611	-	C20orf112	chr20	31099259	-
5UTR-5UTR	ENST00000430629	ENST00000374005		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000399173		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000545953		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000430629	ENST00000374004		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000430629	ENST00000468038		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000374005		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000399173		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000545953		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-intron	ENST00000536657	ENST00000374004		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
5UTR-5UTR	ENST00000536657	ENST00000468038		TCGA	RV	UCS	TCGA-NA-A4R1-01A	WASF2	chr1	27816497	-	FGR	chr1	27951662	-
In-frame	ENST00000398590	ENST00000354883		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000398590	ENST00000336733		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000398590	ENST00000536651		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000398590	ENST00000413054		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-intron	ENST00000398590	ENST00000484768		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
In-frame	ENST00000295900	ENST00000354883		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000295900	ENST00000336733		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000295900	ENST00000536651		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000295900	ENST00000413054		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-intron	ENST00000295900	ENST00000484768		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
In-frame	ENST00000487717	ENST00000354883		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000487717	ENST00000336733		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000487717	ENST00000536651		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000487717	ENST00000413054		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-intron	ENST00000487717	ENST00000484768		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
In-frame	ENST00000538065	ENST00000354883		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000538065	ENST00000336733		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000538065	ENST00000536651		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-5UTR	ENST00000538065	ENST00000413054		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
5CDS-intron	ENST00000538065	ENST00000484768		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-3CDS	ENST00000484332	ENST00000354883		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-5UTR	ENST00000484332	ENST00000336733		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-5UTR	ENST00000484332	ENST00000536651		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-5UTR	ENST00000484332	ENST00000413054		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-intron	ENST00000484332	ENST00000484768		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-3CDS	ENST00000488239	ENST00000354883		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-5UTR	ENST00000488239	ENST00000336733		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-5UTR	ENST00000488239	ENST00000536651		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-5UTR	ENST00000488239	ENST00000413054		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-intron	ENST00000488239	ENST00000484768		TCGA	RV	UCS	TCGA-NA-A4QW-01A	ATXN7	chr3	63938159	+	SLC25A26	chr3	66293627	+
intron-3CDS	ENST00000523698	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
intron-3UTR	ENST00000523698	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
Frame-shit	ENST00000517876	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5CDS-3UTR	ENST00000517876	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
intron-3CDS	ENST00000521450	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
intron-3UTR	ENST00000521450	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
Frame-shit	ENST00000403027	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5CDS-3UTR	ENST00000403027	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5UTR-3CDS	ENST00000524105	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5UTR-3UTR	ENST00000524105	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
Frame-shit	ENST00000285896	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5CDS-3UTR	ENST00000285896	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5UTR-3CDS	ENST00000520671	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5UTR-3UTR	ENST00000520671	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5UTR-3CDS	ENST00000521583	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5UTR-3UTR	ENST00000521583	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
Frame-shit	ENST00000519404	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
5CDS-3UTR	ENST00000519404	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
3UTR-3CDS	ENST00000521402	ENST00000399575		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
3UTR-3UTR	ENST00000521402	ENST00000514338		TCGA	RV	UCS	TCGA-NA-A4QW-01A	CNOT8	chr5	154244945	+	PROL1	chr4	71275097	+
intron-3CDS	ENST00000441576	ENST00000326739		TCGA	RV	UCS	TCGA-ND-A4WF-01A	DALRD3	chr3	49058279	-	IMPDH2	chr3	49062235	-
intron-3CDS	ENST00000341949	ENST00000326739		TCGA	RV	UCS	TCGA-ND-A4WF-01A	DALRD3	chr3	49058279	-	IMPDH2	chr3	49062235	-
intron-3CDS	ENST00000395462	ENST00000326739		TCGA	RV	UCS	TCGA-ND-A4WF-01A	DALRD3	chr3	49058279	-	IMPDH2	chr3	49062235	-
5UTR-3CDS	ENST00000440857	ENST00000326739		TCGA	RV	UCS	TCGA-ND-A4WF-01A	DALRD3	chr3	49058279	-	IMPDH2	chr3	49062235	-
5UTR-3CDS	ENST00000313778	ENST00000326739		TCGA	RV	UCS	TCGA-ND-A4WF-01A	DALRD3	chr3	49058279	-	IMPDH2	chr3	49062235	-
intron-3CDS	ENST00000496568	ENST00000326739		TCGA	RV	UCS	TCGA-ND-A4WF-01A	DALRD3	chr3	49058279	-	IMPDH2	chr3	49062235	-
In-frame	ENST00000534328	ENST00000397510		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000534328	ENST00000608174		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000534328	ENST00000397512		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
5CDS-intron	ENST00000534328	ENST00000528024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000332231	ENST00000397510		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000332231	ENST00000608174		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000332231	ENST00000397512		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
5CDS-intron	ENST00000332231	ENST00000528024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000448903	ENST00000397510		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000448903	ENST00000608174		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
In-frame	ENST00000448903	ENST00000397512		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
5CDS-intron	ENST00000448903	ENST00000528024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
intron-3CDS	ENST00000525891	ENST00000397510		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
intron-3CDS	ENST00000525891	ENST00000608174		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
intron-3CDS	ENST00000525891	ENST00000397512		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
intron-intron	ENST00000525891	ENST00000528024		TCGA	RV	UCS	TCGA-N6-A4VG-01A	AP2A2	chr11	926088	+	TMEM80	chr11	698869	+
intron-3CDS	ENST00000474534	ENST00000331483		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-intron	ENST00000474534	ENST00000576390		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-intron	ENST00000474534	ENST00000439918		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-5UTR	ENST00000474534	ENST00000472244		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
In-frame	ENST00000358369	ENST00000331483		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
5CDS-intron	ENST00000358369	ENST00000576390		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
5CDS-intron	ENST00000358369	ENST00000439918		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
5CDS-5UTR	ENST00000358369	ENST00000472244		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
3UTR-3CDS	ENST00000277475	ENST00000331483		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
3UTR-intron	ENST00000277475	ENST00000576390		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
3UTR-intron	ENST00000277475	ENST00000439918		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
3UTR-5UTR	ENST00000277475	ENST00000472244		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-3CDS	ENST00000406926	ENST00000331483		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-intron	ENST00000406926	ENST00000576390		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-intron	ENST00000406926	ENST00000439918		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
intron-5UTR	ENST00000406926	ENST00000472244		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	FAM73B	chr9	131825910	+	P4HB	chr17	79805223	-
In-frame	ENST00000379540	ENST00000330899		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
5CDS-5UTR	ENST00000379540	ENST00000544625		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
5CDS-intron	ENST00000379540	ENST00000495015		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
In-frame	ENST00000379521	ENST00000330899		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
5CDS-5UTR	ENST00000379521	ENST00000544625		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
5CDS-intron	ENST00000379521	ENST00000495015		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
In-frame	ENST00000318524	ENST00000330899		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
5CDS-5UTR	ENST00000318524	ENST00000544625		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
5CDS-intron	ENST00000318524	ENST00000495015		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
intron-3CDS	ENST00000463421	ENST00000330899		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
intron-5UTR	ENST00000463421	ENST00000544625		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
intron-intron	ENST00000463421	ENST00000495015		TCGA	RV	UCS	TCGA-N8-A56S-01A	NFX1	chr9	33290595	+	DNAJA1	chr9	33029883	+
Frame-shit	ENST00000357429	ENST00000402746		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000357429	ENST00000399654		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000357429	ENST00000406869		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000357429	ENST00000265854		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000357429	ENST00000486340		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397100	ENST00000402746		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397100	ENST00000399654		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397100	ENST00000406869		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397100	ENST00000265854		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000397100	ENST00000486340		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397098	ENST00000402746		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397098	ENST00000399654		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
Frame-shit	ENST00000397098	ENST00000406869		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
In-frame	ENST00000397098	ENST00000265854		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5CDS-intron	ENST00000397098	ENST00000486340		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000402746		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000399654		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000406869		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-3CDS	ENST00000488073	ENST00000265854		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
5UTR-intron	ENST00000488073	ENST00000486340		TCGA	RV	UCS	TCGA-NA-A4R0-01A	C7orf50	chr7	1166893	-	MAD1L1	chr7	1855864	-
intron-3CDS	ENST00000410075	ENST00000353317		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000410075	ENST00000315962		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000410075	ENST00000276573		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000410075	ENST00000350034		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000377802	ENST00000353317		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000377802	ENST00000315962		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000377802	ENST00000276573		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
intron-3CDS	ENST00000377802	ENST00000350034		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
Frame-shit	ENST00000355812	ENST00000353317		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
Frame-shit	ENST00000355812	ENST00000315962		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
In-frame	ENST00000355812	ENST00000276573		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
In-frame	ENST00000355812	ENST00000350034		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
Frame-shit	ENST00000409544	ENST00000353317		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
Frame-shit	ENST00000409544	ENST00000315962		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
In-frame	ENST00000409544	ENST00000276573		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
In-frame	ENST00000409544	ENST00000350034		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
Frame-shit	ENST00000264447	ENST00000353317		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
Frame-shit	ENST00000264447	ENST00000315962		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
In-frame	ENST00000264447	ENST00000276573		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
In-frame	ENST00000264447	ENST00000350034		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
5UTR-3CDS	ENST00000409407	ENST00000353317		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
5UTR-3CDS	ENST00000409407	ENST00000315962		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
5UTR-3CDS	ENST00000409407	ENST00000276573		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
5UTR-3CDS	ENST00000409407	ENST00000350034		TCGA	RV	UCS	TCGA-N8-A4PO-01A	ZNF638	chr2	71635377	+	TRIM55	chr8	67086706	+
5UTR-3CDS	ENST00000399824	ENST00000332050		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000399824	ENST00000397938		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000399824	ENST00000406548		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000399824	ENST00000331029		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000399824	ENST00000414183		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000399824	ENST00000333395		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000399824	ENST00000332035		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000405659	ENST00000332050		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000405659	ENST00000397938		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000405659	ENST00000406548		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000405659	ENST00000331029		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000405659	ENST00000414183		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000405659	ENST00000333395		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000405659	ENST00000332035		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000338306	ENST00000332050		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000338306	ENST00000397938		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-3CDS	ENST00000338306	ENST00000406548		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000338306	ENST00000331029		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000338306	ENST00000414183		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000338306	ENST00000333395		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
5UTR-intron	ENST00000338306	ENST00000332035		TCGA	RV	UCS	TCGA-NA-A4QV-01A	CCDC157	chr22	30753121	+	EWSR1	chr22	29688126	+
In-frame	ENST00000216122	ENST00000216117		TCGA	RV	UCS	TCGA-N6-A4V9-01A	MCM5	chr22	35796598	+	HMOX1	chr22	35789461	+
In-frame	ENST00000382011	ENST00000216117		TCGA	RV	UCS	TCGA-N6-A4V9-01A	MCM5	chr22	35796598	+	HMOX1	chr22	35789461	+
intron-3CDS	ENST00000465557	ENST00000216117		TCGA	RV	UCS	TCGA-N6-A4V9-01A	MCM5	chr22	35796598	+	HMOX1	chr22	35789461	+
Frame-shit	ENST00000348943	ENST00000264079		TCGA	RV	UCS	TCGA-N8-A4PN-01A	HNRNPM	chr19	8527465	+	MCOLN1	chr19	7592406	+
Frame-shit	ENST00000325495	ENST00000264079		TCGA	RV	UCS	TCGA-N8-A4PN-01A	HNRNPM	chr19	8527465	+	MCOLN1	chr19	7592406	+
intron-3CDS	ENST00000602219	ENST00000264079		TCGA	RV	UCS	TCGA-N8-A4PN-01A	HNRNPM	chr19	8527465	+	MCOLN1	chr19	7592406	+
Frame-shit	ENST00000374580	ENST00000264279		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BMPR2	chr2	203242273	+	NOP58	chr2	203139836	+
5CDS-intron	ENST00000374580	ENST00000467734		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BMPR2	chr2	203242273	+	NOP58	chr2	203139836	+
Frame-shit	ENST00000374574	ENST00000264279		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BMPR2	chr2	203242273	+	NOP58	chr2	203139836	+
5CDS-intron	ENST00000374574	ENST00000467734		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BMPR2	chr2	203242273	+	NOP58	chr2	203139836	+
intron-3CDS	ENST00000479069	ENST00000264279		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BMPR2	chr2	203242273	+	NOP58	chr2	203139836	+
intron-intron	ENST00000479069	ENST00000467734		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BMPR2	chr2	203242273	+	NOP58	chr2	203139836	+
5UTR-3CDS	ENST00000309955	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000309955	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000309955	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000443227	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000443227	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000443227	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000341222	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000341222	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000341222	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000340870	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000340870	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000340870	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000355558	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000355558	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000355558	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000341582	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000341582	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000341582	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000342795	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000342795	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000342795	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000395148	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000395148	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
5UTR-3CDS	ENST00000395148	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000423241	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000423241	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000423241	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000490965	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000440180	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000440180	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000440180	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000457277	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000457277	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000457277	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000494258	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000494258	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000494258	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000479953	ENST00000237889		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000479953	ENST00000433898		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
intron-3CDS	ENST00000479953	ENST00000454214		TCGA	RV	UCS	TCGA-N5-A59E-01A	CFLAR	chr2	201981204	+	NDUFB3	chr2	201950182	+
In-frame	ENST00000439977	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000439977	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000439977	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000439977	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-5UTR	ENST00000439977	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000439977	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000439977	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000439977	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000300302	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000300302	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000300302	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000300302	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-5UTR	ENST00000300302	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000300302	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000300302	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000300302	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000344114	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000344114	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000344114	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000344114	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-5UTR	ENST00000344114	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000344114	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000344114	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000344114	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-3CDS	ENST00000570273	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-3CDS	ENST00000570273	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-3CDS	ENST00000570273	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-3CDS	ENST00000570273	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-5UTR	ENST00000570273	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-intron	ENST00000570273	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-intron	ENST00000570273	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
3UTR-intron	ENST00000570273	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000379792	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000379792	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000379792	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000379792	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-5UTR	ENST00000379792	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000379792	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000379792	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
5CDS-intron	ENST00000379792	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	HERPUD1	chr16	56970729	+	THADA	chr2	43657441	-
In-frame	ENST00000263433	ENST00000250340		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	PPP1R12C	chr19	55610152	-	CLEC11A	chr19	51227162	+
In-frame	ENST00000263433	ENST00000599973		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	PPP1R12C	chr19	55610152	-	CLEC11A	chr19	51227162	+
In-frame	ENST00000376393	ENST00000250340		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	PPP1R12C	chr19	55610152	-	CLEC11A	chr19	51227162	+
In-frame	ENST00000376393	ENST00000599973		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	PPP1R12C	chr19	55610152	-	CLEC11A	chr19	51227162	+
In-frame	ENST00000435544	ENST00000250340		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	PPP1R12C	chr19	55610152	-	CLEC11A	chr19	51227162	+
In-frame	ENST00000435544	ENST00000599973		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	PPP1R12C	chr19	55610152	-	CLEC11A	chr19	51227162	+
Frame-shit	ENST00000340513	ENST00000253381		TCGA	RV	UCS	TCGA-N5-A4RD-01A	TPX2	chr20	30359485	+	DEFB118	chr20	29960660	+
Frame-shit	ENST00000300403	ENST00000253381		TCGA	RV	UCS	TCGA-N5-A4RD-01A	TPX2	chr20	30359485	+	DEFB118	chr20	29960660	+
5CDS-5UTR	ENST00000361445	ENST00000235310		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
5CDS-5UTR	ENST00000361445	ENST00000376692		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
5CDS-5UTR	ENST00000361445	ENST00000376672		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
5CDS-5UTR	ENST00000361445	ENST00000376669		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
5CDS-5UTR	ENST00000361445	ENST00000376667		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000376838	ENST00000235310		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000376838	ENST00000376692		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000376838	ENST00000376672		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000376838	ENST00000376669		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000376838	ENST00000376667		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000495435	ENST00000235310		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000495435	ENST00000376692		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000495435	ENST00000376672		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000495435	ENST00000376669		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
intron-5UTR	ENST00000495435	ENST00000376667		TCGA	RV	UCS	TCGA-NA-A4QX-01A	MTOR	chr1	11227499	-	MAD2L2	chr1	11740670	-
5UTR-5UTR	ENST00000293493	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000293493	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000293493	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000293493	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000293493	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000293493	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000339069	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000339069	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000339069	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000339069	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000339069	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000339069	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000314537	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000314537	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000314537	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000314537	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000314537	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000314537	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000352855	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000352855	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000352855	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000352855	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000352855	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000352855	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000577353	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000577353	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000577353	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000577353	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000577353	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000577353	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000398285	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000398285	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000398285	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000398285	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000398285	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000398285	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000548791	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000548791	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000548791	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000548791	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000548791	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000548791	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551817	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551817	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551817	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551817	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551817	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551817	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000550606	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000550606	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000550606	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000550606	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000550606	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000550606	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000552724	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000552724	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000552724	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000552724	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000552724	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000552724	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000547258	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000547258	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000547258	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000547258	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000547258	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000547258	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551221	ENST00000393328		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551221	ENST00000393331		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551221	ENST00000347630		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551221	ENST00000504102		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551221	ENST00000503676		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
intron-5UTR	ENST00000551221	ENST00000513080		TCGA	RV	UCS	TCGA-N8-A56S-01A	CRHR1	chr17	43699407	+	SPOP	chr17	47700238	-
5UTR-3CDS	ENST00000264211	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000264211	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000400422	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000400422	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000602326	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000602326	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000374935	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374935	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000374937	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374937	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000536266	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000536266	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000374933	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000374933	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000544689	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000544689	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000356916	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000356916	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-3CDS	ENST00000374927	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
5UTR-intron	ENST00000374927	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-3CDS	ENST00000537738	ENST00000415912		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000357071		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000374893		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000436918		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000264205		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
intron-intron	ENST00000537738	ENST00000528294		TCGA	RV	UCS	TCGA-NA-A4R1-01A	EIF4G3	chr1	21377359	-	ECE1	chr1	21616649	-
Frame-shit	ENST00000255608	ENST00000454366		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BTBD2	chr19	1987165	-	GTSE1	chr22	46719087	+
intron-3CDS	ENST00000590646	ENST00000454366		TCGA	RV	UCS	TCGA-NA-A4R1-01A	BTBD2	chr19	1987165	-	GTSE1	chr22	46719087	+
intron-3CDS	ENST00000448637	ENST00000335325		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000448637	ENST00000320619		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000448637	ENST00000566250		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000448637	ENST00000567962		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3UTR	ENST00000448637	ENST00000564320		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000312675	ENST00000335325		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000312675	ENST00000320619		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000312675	ENST00000566250		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000312675	ENST00000567962		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3UTR	ENST00000312675	ENST00000564320		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000543006	ENST00000335325		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000543006	ENST00000320619		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000543006	ENST00000566250		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3CDS	ENST00000543006	ENST00000567962		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
5UTR-3UTR	ENST00000543006	ENST00000564320		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000471917	ENST00000335325		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000471917	ENST00000320619		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000471917	ENST00000566250		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000471917	ENST00000567962		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3UTR	ENST00000471917	ENST00000564320		TCGA	RV	UCS	TCGA-N5-A4RF-01A	LPP	chr3	187943315	+	ZNRF1	chr16	75127470	+
intron-3CDS	ENST00000394936	ENST00000380550		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-intron	ENST00000394936	ENST00000398395		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-intron	ENST00000394936	ENST00000380567		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-intron	ENST00000394936	ENST00000340096		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-3UTR	ENST00000394936	ENST00000490265		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-3CDS	ENST00000394934	ENST00000380550		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-intron	ENST00000394934	ENST00000398395		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-intron	ENST00000394934	ENST00000380567		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-intron	ENST00000394934	ENST00000340096		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
intron-3UTR	ENST00000394934	ENST00000490265		TCGA	RV	UCS	TCGA-N7-A59B-01A	PSAP	chr10	73576307	-	OFD1	chrX	13786837	+
Frame-shit	ENST00000417669	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000417669	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000414469	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000414469	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000439548	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000439548	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000443721	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000443721	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
intron-3CDS	ENST00000465861	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
intron-3CDS	ENST00000465861	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000542779	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000542779	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000538182	ENST00000401642		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
Frame-shit	ENST00000538182	ENST00000388940		TCGA	RV	UCS	TCGA-NA-A4QY-01A	MPPED1	chr22	43870841	+	SCFD2	chr4	53740228	-
5CDS-intron	ENST00000308159	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000308159	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5CDS-intron	ENST00000569842	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000564887	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000569595	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000330266		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000405975		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000415080		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000405006		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000485353		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000402360		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000404790		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
intron-intron	ENST00000542526	ENST00000403856		TCGA	RV	UCS	TCGA-NA-A4QV-01A	NUP93	chr16	56792567	+	THADA	chr2	43460021	-
5UTR-3CDS	ENST00000334512	ENST00000539909		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000334512	ENST00000286621		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000334512	ENST00000372734		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000334512	ENST00000541550		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
5UTR-intron	ENST00000334512	ENST00000467840		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000478357	ENST00000539909		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000478357	ENST00000286621		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000478357	ENST00000372734		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000478357	ENST00000541550		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-intron	ENST00000478357	ENST00000467840		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000446377	ENST00000539909		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000446377	ENST00000286621		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000446377	ENST00000372734		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-3CDS	ENST00000446377	ENST00000541550		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
intron-intron	ENST00000446377	ENST00000467840		TCGA	RV	UCS	TCGA-NA-A4QV-01A	ZMIZ1	chr10	80829027	+	ADK	chr10	76468079	+
5UTR-3CDS	ENST00000318833	ENST00000269260		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-5UTR	ENST00000318833	ENST00000574954		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-intron	ENST00000318833	ENST00000570718		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-intron	ENST00000318833	ENST00000346341		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-5UTR	ENST00000318833	ENST00000572457		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-5UTR	ENST00000318833	ENST00000381488		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-5UTR	ENST00000318833	ENST00000412477		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-5UTR	ENST00000318833	ENST00000575877		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
5UTR-5UTR	ENST00000318833	ENST00000571206		TCGA	RV	UCS	TCGA-N9-A4Q8-01A	ZFP3	chr17	4981870	+	ARRB2	chr17	4620512	+
Frame-shit	ENST00000262158	ENST00000442713		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
Frame-shit	ENST00000262158	ENST00000269445		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-intron	ENST00000262158	ENST00000584977		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-intron	ENST00000262158	ENST00000578396		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
In-frame	ENST00000591805	ENST00000442713		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
Frame-shit	ENST00000591805	ENST00000269445		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-intron	ENST00000591805	ENST00000584977		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-intron	ENST00000591805	ENST00000578396		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
Frame-shit	ENST00000589634	ENST00000442713		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
Frame-shit	ENST00000589634	ENST00000269445		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-intron	ENST00000589634	ENST00000584977		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-intron	ENST00000589634	ENST00000578396		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5UTR-3CDS	ENST00000585986	ENST00000442713		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5UTR-3CDS	ENST00000585986	ENST00000269445		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5UTR-intron	ENST00000585986	ENST00000584977		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5UTR-intron	ENST00000585986	ENST00000578396		TCGA	RV	UCS	TCGA-NA-A4R0-01A	SMAD7	chr18	46468851	-	DYM	chr18	46570574	-
5CDS-5UTR	ENST00000264335	ENST00000400723		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5CDS-5UTR	ENST00000264335	ENST00000570996		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5UTR-5UTR	ENST00000571732	ENST00000400723		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5UTR-5UTR	ENST00000571732	ENST00000570996		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5CDS-5UTR	ENST00000573026	ENST00000400723		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5CDS-5UTR	ENST00000573026	ENST00000570996		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5CDS-5UTR	ENST00000575977	ENST00000400723		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5CDS-5UTR	ENST00000575977	ENST00000570996		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5UTR-5UTR	ENST00000498643	ENST00000400723		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
5UTR-5UTR	ENST00000498643	ENST00000570996		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	YWHAE	chr17	1303341	-	GCGR	chr17	79766718	+
In-frame	ENST00000399782	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
In-frame	ENST00000317582	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
5UTR-3CDS	ENST00000543133	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
intron-3CDS	ENST00000538149	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
5UTR-3CDS	ENST00000337612	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
In-frame	ENST00000493680	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
In-frame	ENST00000355028	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
In-frame	ENST00000418951	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
intron-3CDS	ENST00000485631	ENST00000252137		TCGA	RV	UCS	TCGA-N6-A4VE-01A	BCL2L13	chr22	18166087	+	DGCR14	chr22	19124945	-
5UTR-3CDS	ENST00000358161	ENST00000221566		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
5UTR-intron	ENST00000358161	ENST00000586711		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
5UTR-3CDS	ENST00000372739	ENST00000221566		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
5UTR-intron	ENST00000372739	ENST00000586711		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
5UTR-3CDS	ENST00000372731	ENST00000221566		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
5UTR-intron	ENST00000372731	ENST00000586711		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
intron-3CDS	ENST00000475367	ENST00000221566		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
intron-intron	ENST00000475367	ENST00000586711		TCGA	RV	UCS	TCGA-NA-A4R1-01A	SPTAN1	chr9	131314975	+	SGTA	chr19	2761520	-
In-frame	ENST00000561648	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
In-frame	ENST00000561648	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
In-frame	ENST00000561648	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
5CDS-intron	ENST00000561648	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000563137	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000563137	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000563137	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
5CDS-intron	ENST00000563137	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000562871	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000562871	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000562871	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
5CDS-intron	ENST00000562871	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000262383	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000262383	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000262383	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
5CDS-intron	ENST00000262383	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000535559	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000535559	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000535559	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-intron	ENST00000535559	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000567169	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000567169	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000567169	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-intron	ENST00000567169	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000562520	ENST00000535016		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000562520	ENST00000265872		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
Frame-shit	ENST00000562520	ENST00000543719		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
5CDS-intron	ENST00000562520	ENST00000483264		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	ZNF423	chr16	49764682	-	CCAR1	chr10	70545893	+
intron-3CDS	ENST00000381395	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000381406	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000416167	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
In-frame	ENST00000300632	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000434045	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000381392	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000381389	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
intron-3CDS	ENST00000418738	ENST00000262238		TCGA	RV	UCS	TCGA-N5-A4RO-01A	IGF2	chr11	2150351	-	YY1	chr14	100728641	+
5CDS-intron	ENST00000377795	ENST00000322776		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000377795	ENST00000532303		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000377795	ENST00000529927		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000377795	ENST00000415352		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
5CDS-intron	ENST00000377795	ENST00000526169		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000353334	ENST00000322776		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000353334	ENST00000532303		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000353334	ENST00000529927		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000353334	ENST00000415352		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000353334	ENST00000526169		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524315	ENST00000322776		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524315	ENST00000532303		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524315	ENST00000529927		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524315	ENST00000415352		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000524315	ENST00000526169		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000009530	ENST00000322776		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000009530	ENST00000532303		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000009530	ENST00000529927		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000009530	ENST00000415352		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
intron-intron	ENST00000009530	ENST00000526169		TCGA	RV	UCS	TCGA-N9-A4Q7-01A	CD74	chr5	149781200	-	NDUFV1	chr11	67375697	+
In-frame	ENST00000337619	ENST00000600603		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
In-frame	ENST00000337619	ENST00000601638		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
In-frame	ENST00000337619	ENST00000221557		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000337619	ENST00000598325		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000337619	ENST00000391842		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000337619	ENST00000599732		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
5CDS-3UTR	ENST00000337619	ENST00000601675		TCGA	RV	UCS	TCGA-N8-A56S-01A	AP1S1	chr7	100797798	+	PTOV1	chr19	50357663	+
Frame-shit	ENST00000378460	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
Frame-shit	ENST00000378460	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
In-frame	ENST00000378460	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
In-frame	ENST00000378460	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000378460	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000378460	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000378460	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-3CDS	ENST00000530326	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-3CDS	ENST00000530326	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-3CDS	ENST00000530326	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-3CDS	ENST00000530326	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-intron	ENST00000530326	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-intron	ENST00000530326	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5UTR-intron	ENST00000530326	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528071	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528071	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528071	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528071	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000528071	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000528071	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000528071	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528501	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528501	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528501	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000528501	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000528501	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000528501	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000528501	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000531016	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000531016	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000531016	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-3CDS	ENST00000531016	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000531016	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000531016	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-intron	ENST00000531016	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
Frame-shit	ENST00000532747	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
In-frame	ENST00000532747	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
Frame-shit	ENST00000532747	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
Frame-shit	ENST00000532747	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000532747	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000532747	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000532747	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
Frame-shit	ENST00000526870	ENST00000442092		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
Frame-shit	ENST00000526870	ENST00000266022		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
In-frame	ENST00000526870	ENST00000443081		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
In-frame	ENST00000526870	ENST00000539992		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000526870	ENST00000441115		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000526870	ENST00000422955		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
5CDS-intron	ENST00000526870	ENST00000421682		TCGA	RV	UCS	TCGA-N5-A4RA-01A	NUP160	chr11	47869400	-	RBM6	chr3	50114441	+
intron-5UTR	ENST00000553116	ENST00000331886		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
intron-5UTR	ENST00000553116	ENST00000394147		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
intron-5UTR	ENST00000553116	ENST00000551156		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
intron-intron	ENST00000553116	ENST00000549079		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-5UTR	ENST00000360299	ENST00000331886		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-5UTR	ENST00000360299	ENST00000394147		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-5UTR	ENST00000360299	ENST00000551156		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-intron	ENST00000360299	ENST00000549079		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-5UTR	ENST00000448789	ENST00000331886		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-5UTR	ENST00000448789	ENST00000394147		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-5UTR	ENST00000448789	ENST00000551156		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
5UTR-intron	ENST00000448789	ENST00000549079		TCGA	RV	UCS	TCGA-N8-A4PP-01A	RAB5B	chr12	56367923	+	DGKA	chr12	56330207	+
intron-intron	ENST00000379056	ENST00000267101		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000450146		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000415288		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000553131		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000411731		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379056	ENST00000549832		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000267101		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000450146		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000415288		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000553131		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000411731		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000529421	ENST00000549832		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000267101		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000450146		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000415288		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000553131		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000411731		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
5CDS-intron	ENST00000530705	ENST00000549832		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000267101		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000450146		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000415288		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000553131		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000411731		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379060	ENST00000549832		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000267101		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000450146		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000415288		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000553131		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000411731		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000379055	ENST00000549832		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000267101		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000450146		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000415288		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000553131		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000411731		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-intron	ENST00000309246	ENST00000549832		TCGA	RV	UCS	TCGA-N6-A4VC-01A	TPT1	chr13	45911313	-	ERBB3	chr12	56492035	+
intron-3CDS	ENST00000373913	ENST00000372726		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000373913	ENST00000537995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000373913	ENST00000494455		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000401952	ENST00000372726		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000401952	ENST00000537995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000401952	ENST00000494455		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000373907	ENST00000372726		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000373907	ENST00000537995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000373907	ENST00000494455		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000339266	ENST00000372726		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000339266	ENST00000537995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000339266	ENST00000494455		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000475894	ENST00000372726		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-3CDS	ENST00000475894	ENST00000537995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
intron-5UTR	ENST00000475894	ENST00000494455		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
Frame-shit	ENST00000340491	ENST00000372726		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
Frame-shit	ENST00000340491	ENST00000537995		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
5CDS-5UTR	ENST00000340491	ENST00000494455		TCGA	RV	UCS	TCGA-N8-A4PN-01A	DLGAP4	chr20	35091002	+	TP53TG5	chr20	44006253	-
5UTR-3CDS	ENST00000391876	ENST00000222145		TCGA	RV	UCS	TCGA-N6-A4VE-01A	FUT2	chr19	49199336	+	RASIP1	chr19	49228217	-
5UTR-intron	ENST00000391876	ENST00000594232		TCGA	RV	UCS	TCGA-N6-A4VE-01A	FUT2	chr19	49199336	+	RASIP1	chr19	49228217	-
5UTR-3CDS	ENST00000425340	ENST00000222145		TCGA	RV	UCS	TCGA-N6-A4VE-01A	FUT2	chr19	49199336	+	RASIP1	chr19	49228217	-
5UTR-intron	ENST00000425340	ENST00000594232		TCGA	RV	UCS	TCGA-N6-A4VE-01A	FUT2	chr19	49199336	+	RASIP1	chr19	49228217	-
3UTR-3CDS	ENST00000522283	ENST00000222145		TCGA	RV	UCS	TCGA-N6-A4VE-01A	FUT2	chr19	49199336	+	RASIP1	chr19	49228217	-
3UTR-intron	ENST00000522283	ENST00000594232		TCGA	RV	UCS	TCGA-N6-A4VE-01A	FUT2	chr19	49199336	+	RASIP1	chr19	49228217	-
Frame-shit	ENST00000263645	ENST00000298032		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
Frame-shit	ENST00000263645	ENST00000409983		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
5CDS-intron	ENST00000263645	ENST00000409049		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
5CDS-intron	ENST00000263645	ENST00000376528		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
5CDS-intron	ENST00000263645	ENST00000464017		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000492627	ENST00000298032		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000492627	ENST00000409983		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000492627	ENST00000409049		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000492627	ENST00000376528		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000492627	ENST00000464017		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000381036	ENST00000298032		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000381036	ENST00000409983		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000381036	ENST00000409049		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000381036	ENST00000376528		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000381036	ENST00000464017		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000526072	ENST00000298032		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000526072	ENST00000409983		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000526072	ENST00000409049		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000526072	ENST00000376528		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000526072	ENST00000464017		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000524805	ENST00000298032		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000524805	ENST00000409983		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000524805	ENST00000409049		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000524805	ENST00000376528		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000524805	ENST00000464017		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000481687	ENST00000298032		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-3CDS	ENST00000481687	ENST00000409983		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000481687	ENST00000409049		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000481687	ENST00000376528		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
intron-intron	ENST00000481687	ENST00000464017		TCGA	RV	UCS	TCGA-NA-A5I1-01A	CD81	chr11	2398845	+	ARMC3	chr10	23321790	+
3UTR-3CDS	ENST00000531709	ENST00000377897		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000531709	ENST00000294179		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000531709	ENST00000394690		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
3UTR-3CDS	ENST00000531709	ENST00000541317		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
In-frame	ENST00000294172	ENST00000377897		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
Frame-shit	ENST00000294172	ENST00000294179		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
In-frame	ENST00000294172	ENST00000394690		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
In-frame	ENST00000294172	ENST00000541317		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
Frame-shit	ENST00000532297	ENST00000377897		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
In-frame	ENST00000532297	ENST00000294179		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
Frame-shit	ENST00000532297	ENST00000394690		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
Frame-shit	ENST00000532297	ENST00000541317		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000533048	ENST00000377897		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000533048	ENST00000294179		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000533048	ENST00000394690		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
5UTR-3CDS	ENST00000533048	ENST00000541317		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000377897		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000294179		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000394690		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000531131	ENST00000541317		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000377897		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000294179		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000394690		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
intron-3CDS	ENST00000439713	ENST00000541317		TCGA	RV	UCS	TCGA-NA-A4R1-01A	NXF1	chr11	62563932	-	STX5	chr11	62575100	-
In-frame	ENST00000254066	ENST00000262613		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000254066	ENST00000413388		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000394089	ENST00000262613		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000394089	ENST00000413388		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000425707	ENST00000262613		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000425707	ENST00000413388		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000394086	ENST00000262613		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000394086	ENST00000413388		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
In-frame	ENST00000394081	ENST00000262613		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000394081	ENST00000413388		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
3UTR-3CDS	ENST00000420042	ENST00000262613		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
3UTR-5UTR	ENST00000420042	ENST00000413388		TCGA	RV	UCS	TCGA-N8-A4PQ-01A	RARA	chr17	38508759	+	SLC9A3R1	chr17	72758151	+
5CDS-5UTR	ENST00000382199	ENST00000533141		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000382199	ENST00000399817		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000382199	ENST00000602569		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-5UTR	ENST00000421047	ENST00000533141		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-5UTR	ENST00000421047	ENST00000399817		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-5UTR	ENST00000421047	ENST00000602569		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000457616	ENST00000533141		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000457616	ENST00000399817		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000457616	ENST00000602569		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000346192	ENST00000533141		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000346192	ENST00000399817		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
5CDS-5UTR	ENST00000346192	ENST00000602569		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-5UTR	ENST00000494906	ENST00000533141		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-5UTR	ENST00000494906	ENST00000399817		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-5UTR	ENST00000494906	ENST00000602569		TCGA	RV	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM2	chr11	308231	+
intron-3CDS	ENST00000578861	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
intron-3CDS	ENST00000578861	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
intron-intron	ENST00000578861	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
intron-3CDS	ENST00000580219	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
intron-3CDS	ENST00000580219	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
intron-intron	ENST00000580219	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000452859	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000452859	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-intron	ENST00000452859	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000393405	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000393405	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-intron	ENST00000393405	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000439357	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000439357	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-intron	ENST00000439357	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000359238	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000359238	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-intron	ENST00000359238	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000582104	ENST00000502492		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-3CDS	ENST00000582104	ENST00000290330		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
5UTR-intron	ENST00000582104	ENST00000514089		TCGA	RV	UCS	TCGA-N8-A56S-01A	SNX11	chr17	46185200	+	SNF8	chr17	47021337	-
Frame-shit	ENST00000409792	ENST00000263174		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	PALMD	chr1	100159575	+
5CDS-intron	ENST00000409792	ENST00000605497		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	PALMD	chr1	100159575	+
intron-3CDS	ENST00000492397	ENST00000263174		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	PALMD	chr1	100159575	+
intron-intron	ENST00000492397	ENST00000605497		TCGA	RV	UCS	TCGA-N9-A4PZ-01A	SETD2	chr3	47205344	-	PALMD	chr1	100159575	+
5UTR-3CDS	ENST00000368882	ENST00000441478		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
5UTR-3CDS	ENST00000368882	ENST00000230124		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
5UTR-intron	ENST00000368882	ENST00000368941		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
Frame-shit	ENST00000368885	ENST00000441478		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
In-frame	ENST00000368885	ENST00000230124		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
5CDS-intron	ENST00000368885	ENST00000368941		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
Frame-shit	ENST00000451850	ENST00000441478		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
In-frame	ENST00000451850	ENST00000230124		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
5CDS-intron	ENST00000451850	ENST00000368941		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
Frame-shit	ENST00000368877	ENST00000441478		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
In-frame	ENST00000368877	ENST00000230124		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
5CDS-intron	ENST00000368877	ENST00000368941		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
intron-3CDS	ENST00000368876	ENST00000441478		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
intron-3CDS	ENST00000368876	ENST00000230124		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
intron-intron	ENST00000368876	ENST00000368941		TCGA	RV	UCS	TCGA-NA-A5I1-01A	AMD1	chr6	111196418	+	FIG4	chr6	110146291	+
Frame-shit	ENST00000255175	ENST00000290231		TCGA	RV	UCS	TCGA-N8-A4PN-01A	SERINC3	chr20	43139930	-	NCOA5	chr20	44691528	-
In-frame	ENST00000342374	ENST00000290231		TCGA	RV	UCS	TCGA-N8-A4PN-01A	SERINC3	chr20	43139930	-	NCOA5	chr20	44691528	-
Frame-shit	ENST00000541235	ENST00000290231		TCGA	RV	UCS	TCGA-N8-A4PN-01A	SERINC3	chr20	43139930	-	NCOA5	chr20	44691528	-
intron-3CDS	ENST00000468234	ENST00000290231		TCGA	RV	UCS	TCGA-N8-A4PN-01A	SERINC3	chr20	43139930	-	NCOA5	chr20	44691528	-
Frame-shit	ENST00000368315	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000368315	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000368315	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000368315	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000313695	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000313695	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000313695	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000313695	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000361247	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000361247	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000361247	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000361247	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000368316	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000368316	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000368316	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000368316	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000462460	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000462460	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000462460	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000462460	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
intron-3CDS	ENST00000477754	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
intron-3CDS	ENST00000477754	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
intron-3CDS	ENST00000477754	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
intron-3CDS	ENST00000477754	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000313667	ENST00000295702		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
In-frame	ENST00000313667	ENST00000529008		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000313667	ENST00000496742		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
Frame-shit	ENST00000313667	ENST00000480567		TCGA	RV	UCS	TCGA-N6-A4VC-01A	ARHGEF2	chr1	155921274	-	SSR2	chr1	155979441	-
5UTR-intron	ENST00000282516	ENST00000282469		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000282516	ENST00000509059		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000282516	ENST00000356031		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000282516	ENST00000440995		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000282516	ENST00000303129		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000448238	ENST00000282469		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000448238	ENST00000509059		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000448238	ENST00000356031		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000448238	ENST00000440995		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
5UTR-intron	ENST00000448238	ENST00000303129		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
intron-intron	ENST00000504430	ENST00000282469		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
intron-intron	ENST00000504430	ENST00000509059		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
intron-intron	ENST00000504430	ENST00000356031		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
intron-intron	ENST00000504430	ENST00000440995		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
intron-intron	ENST00000504430	ENST00000303129		TCGA	RV	UCS	TCGA-NF-A4WX-01A	NIPBL	chr5	36877280	+	SPEF2	chr5	35800070	+
In-frame	ENST00000263398	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000263398	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000526025	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000449691	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000360158	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000415148	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000437706	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000433354	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000428726	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000526669	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000433892	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000278386	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000434472	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000352818	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000341394		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000389645		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000532820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000530820		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000529307		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-intron	ENST00000528922	ENST00000533657		TCGA	RV	UCS	TCGA-NG-A4VU-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
Frame-shit	ENST00000395290	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000395290	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
Frame-shit	ENST00000358597	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000358597	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
In-frame	ENST00000395292	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000395292	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
Frame-shit	ENST00000310513	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000310513	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
Frame-shit	ENST00000361904	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000361904	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
intron-3CDS	ENST00000539455	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
intron-intron	ENST00000539455	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
In-frame	ENST00000531165	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000531165	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
Frame-shit	ENST00000532048	ENST00000263773		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
5CDS-intron	ENST00000532048	ENST00000534003		TCGA	RV	UCS	TCGA-N9-A4Q4-01A	CELF1	chr11	47504247	-	FNBP4	chr11	47739064	-
In-frame	ENST00000416426	ENST00000439660		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000416426	ENST00000578573		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
In-frame	ENST00000284073	ENST00000439660		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000284073	ENST00000578573		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
In-frame	ENST00000322684	ENST00000439660		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000322684	ENST00000578573		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
In-frame	ENST00000442934	ENST00000439660		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000442934	ENST00000578573		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
In-frame	ENST00000579180	ENST00000439660		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
5CDS-3UTR	ENST00000579180	ENST00000578573		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
intron-3CDS	ENST00000579505	ENST00000439660		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
intron-3UTR	ENST00000579505	ENST00000578573		TCGA	RV	UCS	TCGA-N8-A4PL-01A	MSI2	chr17	55478832	+	CISD3	chr17	36887013	+
Frame-shit	ENST00000340513	ENST00000376309		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TPX2	chr20	30371724	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000300403	ENST00000376309		TCGA	RV	UCS	TCGA-N5-A4RT-01A	TPX2	chr20	30371724	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000398022	ENST00000376309		TCGA	RV	UCS	TCGA-N8-A4PM-01A	TM9SF4	chr20	30742989	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000217315	ENST00000376309		TCGA	RV	UCS	TCGA-N8-A4PM-01A	TM9SF4	chr20	30742989	+	DEFB123	chr20	30037832	+
Frame-shit	ENST00000394121	ENST00000167588		TCGA	RV	UCS	TCGA-N5-A4RT-01A	THRA	chr17	38245586	+	KRT20	chr17	39033669	-
Frame-shit	ENST00000264637	ENST00000167588		TCGA	RV	UCS	TCGA-N5-A4RT-01A	THRA	chr17	38245586	+	KRT20	chr17	39033669	-
Frame-shit	ENST00000584985	ENST00000167588		TCGA	RV	UCS	TCGA-N5-A4RT-01A	THRA	chr17	38245586	+	KRT20	chr17	39033669	-
Frame-shit	ENST00000450525	ENST00000167588		TCGA	RV	UCS	TCGA-N5-A4RT-01A	THRA	chr17	38245586	+	KRT20	chr17	39033669	-
Frame-shit	ENST00000546243	ENST00000167588		TCGA	RV	UCS	TCGA-N5-A4RT-01A	THRA	chr17	38245586	+	KRT20	chr17	39033669	-
Frame-shit	ENST00000262033	ENST00000454682		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000550952		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000356769		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000552540		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000262033	ENST00000393891		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000262033	ENST00000548563		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000262033	ENST00000546392		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000262033	ENST00000551793		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000454682		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000550952		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000356769		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000552540		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-3CDS	ENST00000537473	ENST00000393891		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-5UTR	ENST00000537473	ENST00000548563		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-5UTR	ENST00000537473	ENST00000546392		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-5UTR	ENST00000537473	ENST00000551793		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000454682		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000550952		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000356769		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000552540		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000414274	ENST00000393891		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000414274	ENST00000548563		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000414274	ENST00000546392		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000414274	ENST00000551793		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000454682		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000550952		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000356769		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000552540		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000436399	ENST00000393891		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000436399	ENST00000548563		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000436399	ENST00000546392		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000436399	ENST00000551793		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000454682		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000550952		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000356769		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000552540		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000448157	ENST00000393891		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000448157	ENST00000548563		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000448157	ENST00000546392		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000448157	ENST00000551793		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000454682		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000550952		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000356769		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000552540		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
Frame-shit	ENST00000456859	ENST00000393891		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000456859	ENST00000548563		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000456859	ENST00000546392		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
5CDS-5UTR	ENST00000456859	ENST00000551793		TCGA	RV	UCS	TCGA-N8-A4PP-01A	PTGES3	chr12	57081782	-	NACA	chr12	57108471	-
intron-intron	ENST00000381395	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381395	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381406	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381406	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000416167	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000416167	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000300632	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000300632	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000434045	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000434045	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381392	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381392	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381389	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000381389	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000418738	ENST00000484427		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-intron	ENST00000418738	ENST00000371764		TCGA	RV	UCS	TCGA-N8-A4PN-01A	IGF2	chr11	2150351	-	DDX27	chr20	47849303	+
intron-3CDS	ENST00000505330	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000505330	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000505330	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000504381	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000504381	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000504381	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000507488	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000507488	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000507488	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000393221	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000393221	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000393221	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000533801	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000533801	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000533801	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
In-frame	ENST00000510168	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000510168	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000510168	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
In-frame	ENST00000508532	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000508532	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000508532	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000504948	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000504948	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000504948	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000513801	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000513801	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000513801	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
In-frame	ENST00000328560	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000328560	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000328560	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
In-frame	ENST00000428331	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000428331	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000428331	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
In-frame	ENST00000359644	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000359644	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000359644	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
In-frame	ENST00000422190	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
Frame-shit	ENST00000422190	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
5CDS-intron	ENST00000422190	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000509150	ENST00000184266		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000509150	ENST00000485064		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-intron	ENST00000509150	ENST00000492739		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ATP2C1	chr3	130613619	+	NDUFB4	chr3	120319958	+
intron-3CDS	ENST00000270221	ENST00000221476		TCGA	LD	UCS	TCGA-N5-A4R8-01A	EMP3	chr19	48825234	+	CKM	chr19	45818855	-
intron-3CDS	ENST00000596315	ENST00000221476		TCGA	LD	UCS	TCGA-N5-A4R8-01A	EMP3	chr19	48825234	+	CKM	chr19	45818855	-
intron-3CDS	ENST00000597279	ENST00000221476		TCGA	LD	UCS	TCGA-N5-A4R8-01A	EMP3	chr19	48825234	+	CKM	chr19	45818855	-
intron-3CDS	ENST00000535112	ENST00000404969		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
intron-3CDS	ENST00000535112	ENST00000437042		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
intron-3CDS	ENST00000535112	ENST00000330688		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
intron-3UTR	ENST00000535112	ENST00000462272		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
intron-3UTR	ENST00000535112	ENST00000458646		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
In-frame	ENST00000396076	ENST00000404969		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
Frame-shit	ENST00000396076	ENST00000437042		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
Frame-shit	ENST00000396076	ENST00000330688		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
5CDS-3UTR	ENST00000396076	ENST00000462272		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
5CDS-3UTR	ENST00000396076	ENST00000458646		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
Frame-shit	ENST00000350669	ENST00000404969		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
Frame-shit	ENST00000350669	ENST00000437042		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
Frame-shit	ENST00000350669	ENST00000330688		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
5CDS-3UTR	ENST00000350669	ENST00000462272		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
5CDS-3UTR	ENST00000350669	ENST00000458646		TCGA	LD	UCS	TCGA-N5-A4R8-01A	LDHB	chr12	21790005	-	RARB	chr3	25637911	+
Frame-shit	ENST00000254323	ENST00000586600		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13867011	+
Frame-shit	ENST00000254323	ENST00000221554		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13867011	+
5CDS-intron	ENST00000254323	ENST00000587019		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13867011	+
Frame-shit	ENST00000440752	ENST00000586600		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13867011	+
Frame-shit	ENST00000440752	ENST00000221554		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13867011	+
5CDS-intron	ENST00000440752	ENST00000587019		TCGA	LD	UCS	TCGA-N5-A4R8-01A	ZSWIM4	chr19	13930306	+	CCDC130	chr19	13867011	+
Frame-shit	ENST00000355938	ENST00000535458		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000355938	ENST00000290158		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000355938	ENST00000540627		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000355938	ENST00000537679		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
5CDS-intron	ENST00000355938	ENST00000577918		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000503641	ENST00000535458		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000503641	ENST00000290158		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000503641	ENST00000540627		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000503641	ENST00000537679		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
5CDS-intron	ENST00000503641	ENST00000577918		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000514808	ENST00000535458		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000514808	ENST00000290158		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000514808	ENST00000540627		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000514808	ENST00000537679		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
5CDS-intron	ENST00000514808	ENST00000577918		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000393366	ENST00000535458		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000393366	ENST00000290158		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000393366	ENST00000540627		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000393366	ENST00000537679		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
5CDS-intron	ENST00000393366	ENST00000577918		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000506855	ENST00000535458		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000506855	ENST00000290158		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000506855	ENST00000540627		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
Frame-shit	ENST00000506855	ENST00000537679		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
5CDS-intron	ENST00000506855	ENST00000577918		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
3UTR-3CDS	ENST00000513781	ENST00000535458		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
3UTR-3CDS	ENST00000513781	ENST00000290158		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
3UTR-3CDS	ENST00000513781	ENST00000540627		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
3UTR-3CDS	ENST00000513781	ENST00000537679		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
3UTR-intron	ENST00000513781	ENST00000577918		TCGA	LD	UCS	TCGA-N5-A4RA-01A	ATP5G1	chr17	46972696	+	KPNB1	chr17	45753775	+
intron-3CDS	ENST00000263377	ENST00000232461		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-3CDS	ENST00000263377	ENST00000433068		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-intron	ENST00000263377	ENST00000481246		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-3CDS	ENST00000371835	ENST00000232461		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-3CDS	ENST00000371835	ENST00000433068		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-intron	ENST00000371835	ENST00000481246		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
5UTR-3CDS	ENST00000360016	ENST00000232461		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
5UTR-3CDS	ENST00000360016	ENST00000433068		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
5UTR-intron	ENST00000360016	ENST00000481246		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-3CDS	ENST00000602230	ENST00000232461		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-3CDS	ENST00000602230	ENST00000433068		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
intron-intron	ENST00000602230	ENST00000481246		TCGA	LD	UCS	TCGA-N5-A4RA-01A	BRD4	chr19	15443101	-	GNAT1	chr3	50230566	+
Frame-shit	ENST00000371649	ENST00000306729		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
Frame-shit	ENST00000371649	ENST00000306739		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
Frame-shit	ENST00000371649	ENST00000580534		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
5CDS-intron	ENST00000371649	ENST00000581647		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
5CDS-3UTR	ENST00000371649	ENST00000582404		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
Frame-shit	ENST00000224073	ENST00000306729		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
Frame-shit	ENST00000224073	ENST00000306739		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
Frame-shit	ENST00000224073	ENST00000580534		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
5CDS-intron	ENST00000224073	ENST00000581647		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
5CDS-3UTR	ENST00000224073	ENST00000582404		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
intron-3CDS	ENST00000371648	ENST00000306729		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
intron-3CDS	ENST00000371648	ENST00000306739		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
intron-3CDS	ENST00000371648	ENST00000580534		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
intron-intron	ENST00000371648	ENST00000581647		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
intron-3UTR	ENST00000371648	ENST00000582404		TCGA	LD	UCS	TCGA-N5-A4RA-01A	EDF1	chr9	139757358	-	ASPSCR1	chr17	79974352	+
5CDS-intron	ENST00000519560	ENST00000522243		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000422546		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000260130		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000447182		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000413219		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000424270		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000523483		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000520168		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000519560	ENST00000447267		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000522243		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000422546		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000260130		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000447182		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000413219		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000424270		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000523483		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000520168		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000332966	ENST00000447267		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000522243		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000422546		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000260130		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000447182		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000413219		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000424270		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000523483		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000520168		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
5CDS-intron	ENST00000404867	ENST00000447267		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000522243		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000422546		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000260130		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000447182		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000413219		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000424270		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000523483		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000520168		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
intron-intron	ENST00000521130	ENST00000447267		TCGA	LD	UCS	TCGA-N5-A4RA-01A	SLIT3	chr5	168175307	-	SDCBP	chr8	59494245	+
In-frame	ENST00000458578	ENST00000397278		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000458578	ENST00000426053		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000458578	ENST00000422706		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000458578	ENST00000319136		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000458578	ENST00000347595		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000458578	ENST00000397279		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000458578	ENST00000440669		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000342192	ENST00000397278		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000342192	ENST00000426053		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000342192	ENST00000422706		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000342192	ENST00000319136		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000342192	ENST00000347595		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000342192	ENST00000397279		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000342192	ENST00000440669		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000545681	ENST00000397278		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000545681	ENST00000426053		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000545681	ENST00000422706		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
In-frame	ENST00000545681	ENST00000319136		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000545681	ENST00000347595		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000545681	ENST00000397279		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-5UTR	ENST00000545681	ENST00000440669		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UBE2L3	chr22	21965332	+	APOL1	chr22	36657642	+
5CDS-3UTR	ENST00000349714	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000349714	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000359226	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000359226	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000374384	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000374384	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000374380	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000374380	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000374385	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000374385	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5UTR-3UTR	ENST00000374377	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5UTR-3UTR	ENST00000374377	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
intron-3UTR	ENST00000397556	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
intron-3UTR	ENST00000397556	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000407996	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000407996	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5UTR-3UTR	ENST00000540457	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5UTR-3UTR	ENST00000540457	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000542501	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000542501	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000397554	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5CDS-3UTR	ENST00000397554	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5UTR-3UTR	ENST00000491125	ENST00000464117		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
5UTR-3UTR	ENST00000491125	ENST00000362011		TCGA	LD	UCS	TCGA-N5-A4RA-01A	UQCC1	chr20	33999743	-	SHISA4	chr1	201858573	+
intron-3CDS	ENST00000517997	ENST00000218388		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000517997	ENST00000377018		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000517997	ENST00000456754		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000517997	ENST00000377017		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-3CDS	ENST00000457458	ENST00000218388		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000457458	ENST00000377018		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000457458	ENST00000456754		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000457458	ENST00000377017		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
5UTR-3CDS	ENST00000357227	ENST00000218388		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
5UTR-5UTR	ENST00000357227	ENST00000377018		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
5UTR-5UTR	ENST00000357227	ENST00000456754		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
5UTR-5UTR	ENST00000357227	ENST00000377017		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-3CDS	ENST00000518022	ENST00000218388		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000518022	ENST00000377018		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000518022	ENST00000456754		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000518022	ENST00000377017		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-3CDS	ENST00000276052	ENST00000218388		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000276052	ENST00000377018		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000276052	ENST00000456754		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
intron-5UTR	ENST00000276052	ENST00000377017		TCGA	LD	UCS	TCGA-N5-A4RD-01A	CDK16	chrX	47078504	+	TIMP1	chrX	47444604	+
Frame-shit	ENST00000449576	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
Frame-shit	ENST00000449576	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
Frame-shit	ENST00000449576	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
Frame-shit	ENST00000449576	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
Frame-shit	ENST00000449576	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
5CDS-intron	ENST00000449576	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396099	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396099	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396099	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396099	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396099	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000396099	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000425416	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000425416	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000425416	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000425416	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000425416	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000425416	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000256720	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000256720	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000256720	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000256720	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000256720	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000256720	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396097	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396097	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396097	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396097	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396097	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000396097	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000404113	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000404113	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000404113	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000404113	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000404113	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000404113	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000464517	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000464517	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000464517	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000464517	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000464517	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000464517	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396098	ENST00000381486		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396098	ENST00000263834		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396098	ENST00000389825		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396098	ENST00000381483		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-3CDS	ENST00000396098	ENST00000234142		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
intron-intron	ENST00000396098	ENST00000396123		TCGA	LD	UCS	TCGA-N5-A4RD-01A	LPIN1	chr2	11853938	+	GREB1	chr2	11716479	+
In-frame	ENST00000430725	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
5CDS-intron	ENST00000430725	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
In-frame	ENST00000325438	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
5CDS-intron	ENST00000325438	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
In-frame	ENST00000458164	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
5CDS-intron	ENST00000458164	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
In-frame	ENST00000447393	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
5CDS-intron	ENST00000447393	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
intron-3CDS	ENST00000547217	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
intron-intron	ENST00000547217	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
intron-3CDS	ENST00000551743	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
intron-intron	ENST00000551743	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
intron-3CDS	ENST00000551801	ENST00000261590		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
intron-intron	ENST00000551801	ENST00000585206		TCGA	LD	UCS	TCGA-N5-A4RD-01A	PACS2	chr14	105818804	+	DSG2	chr18	29104666	+
Frame-shit	ENST00000375300	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
Frame-shit	ENST00000292055	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
5UTR-3CDS	ENST00000375288	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
5UTR-3CDS	ENST00000434315	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
Frame-shit	ENST00000542607	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
Frame-shit	ENST00000446921	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
intron-3CDS	ENST00000488337	ENST00000229390		TCGA	LD	UCS	TCGA-N5-A4RD-01A	SIK3	chr11	116968859	-	SRSF9	chr12	120903590	-
5CDS-intron	ENST00000294119	ENST00000311713		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000294119	ENST00000278856		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000294119	ENST00000529106		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000294119	ENST00000525239		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000294119	ENST00000525752		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000294119	ENST00000540620		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000301935	ENST00000311713		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000301935	ENST00000278856		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000301935	ENST00000529106		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000301935	ENST00000525239		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000301935	ENST00000525752		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000301935	ENST00000540620		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000533000	ENST00000311713		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000533000	ENST00000278856		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000533000	ENST00000529106		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000533000	ENST00000525239		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000533000	ENST00000525752		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000533000	ENST00000540620		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000529640	ENST00000311713		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000529640	ENST00000278856		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000529640	ENST00000529106		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000529640	ENST00000525239		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-5UTR	ENST00000529640	ENST00000525752		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5CDS-intron	ENST00000529640	ENST00000540620		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5UTR-intron	ENST00000524762	ENST00000311713		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5UTR-intron	ENST00000524762	ENST00000278856		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5UTR-intron	ENST00000524762	ENST00000529106		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5UTR-5UTR	ENST00000524762	ENST00000525239		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5UTR-5UTR	ENST00000524762	ENST00000525752		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
5UTR-intron	ENST00000524762	ENST00000540620		TCGA	LD	UCS	TCGA-N5-A4RD-01A	UBXN1	chr11	62444990	-	WDR74	chr11	62607339	-
intron-3CDS	ENST00000527438	ENST00000291535		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
intron-intron	ENST00000527438	ENST00000450356		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
intron-intron	ENST00000527438	ENST00000319294		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
intron-intron	ENST00000527438	ENST00000398367		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
Frame-shit	ENST00000332324	ENST00000291535		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
5CDS-intron	ENST00000332324	ENST00000450356		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
5CDS-intron	ENST00000332324	ENST00000319294		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
5CDS-intron	ENST00000332324	ENST00000398367		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
Frame-shit	ENST00000531896	ENST00000291535		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
5CDS-intron	ENST00000531896	ENST00000450356		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
5CDS-intron	ENST00000531896	ENST00000319294		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
5CDS-intron	ENST00000531896	ENST00000398367		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	DGAT1	chr8	145550100	-	UBASH3A	chr21	43857598	+
Frame-shit	ENST00000371730	ENST00000394440		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371730	ENST00000461540		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371730	ENST00000544079		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371730	ENST00000544185		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371730	ENST00000538252		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
Frame-shit	ENST00000371733	ENST00000394440		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371733	ENST00000461540		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371733	ENST00000544079		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371733	ENST00000544185		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000371733	ENST00000538252		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
Frame-shit	ENST00000396122	ENST00000394440		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000396122	ENST00000461540		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000396122	ENST00000544079		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000396122	ENST00000544185		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-5UTR	ENST00000396122	ENST00000538252		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
intron-3CDS	ENST00000493793	ENST00000394440		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
intron-5UTR	ENST00000493793	ENST00000461540		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
intron-5UTR	ENST00000493793	ENST00000544079		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
intron-5UTR	ENST00000493793	ENST00000544185		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
intron-5UTR	ENST00000493793	ENST00000538252		TCGA	LD	UCS	TCGA-N5-A4RJ-01A	EPS15	chr1	51868107	-	CCT4	chr2	62096688	-
5CDS-intron	ENST00000366812	ENST00000553116		TCGA	LD	UCS	TCGA-N5-A4RM-01A	ACBD3	chr1	226346885	-	RAB5B	chr12	56390307	+
5CDS-intron	ENST00000366812	ENST00000360299		TCGA	LD	UCS	TCGA-N5-A4RM-01A	ACBD3	chr1	226346885	-	RAB5B	chr12	56390307	+
5CDS-intron	ENST00000366812	ENST00000448789		TCGA	LD	UCS	TCGA-N5-A4RM-01A	ACBD3	chr1	226346885	-	RAB5B	chr12	56390307	+
intron-intron	ENST00000464927	ENST00000553116		TCGA	LD	UCS	TCGA-N5-A4RM-01A	ACBD3	chr1	226346885	-	RAB5B	chr12	56390307	+
intron-intron	ENST00000464927	ENST00000360299		TCGA	LD	UCS	TCGA-N5-A4RM-01A	ACBD3	chr1	226346885	-	RAB5B	chr12	56390307	+
intron-intron	ENST00000464927	ENST00000448789		TCGA	LD	UCS	TCGA-N5-A4RM-01A	ACBD3	chr1	226346885	-	RAB5B	chr12	56390307	+
intron-3UTR	ENST00000259605	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000259605	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000259605	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000353739	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000353739	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000353739	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000357058	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000357058	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000357058	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000350199	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000350199	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000350199	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377885	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377885	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377885	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377877	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377877	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000377877	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000491349	ENST00000493368		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000491349	ENST00000318158		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3UTR	ENST00000491349	ENST00000607784		TCGA	LD	UCS	TCGA-N5-A4RM-01A	RNF38	chr9	36400933	-	GRHPR	chr9	37425919	+
intron-3CDS	ENST00000482728	ENST00000321725		TCGA	LD	UCS	TCGA-N5-A4RN-01A	SMIM4	chr3	52570922	+	STAB1	chr3	52535182	+
intron-3CDS	ENST00000307106	ENST00000321725		TCGA	LD	UCS	TCGA-N5-A4RN-01A	SMIM4	chr3	52570922	+	STAB1	chr3	52535182	+
Frame-shit	ENST00000477703	ENST00000321725		TCGA	LD	UCS	TCGA-N5-A4RN-01A	SMIM4	chr3	52570922	+	STAB1	chr3	52535182	+
Frame-shit	ENST00000476842	ENST00000321725		TCGA	LD	UCS	TCGA-N5-A4RN-01A	SMIM4	chr3	52570922	+	STAB1	chr3	52535182	+
5CDS-5UTR	ENST00000351293	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000322635	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000394762	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000423381	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000322680	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000305762	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000372765	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5UTR-5UTR	ENST00000472912	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
5CDS-5UTR	ENST00000444854	ENST00000359322		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CAMK2G	chr10	75597226	-	MYOZ1	chr10	75399793	-
In-frame	ENST00000263398	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000263398	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000263398	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526025	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000526025	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000449691	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000449691	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000360158	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000360158	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000415148	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000415148	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000437706	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000437706	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433354	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000433354	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000428726	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000428726	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000526669	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000526669	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000433892	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000433892	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000278386	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000278386	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000434472	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000434472	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
In-frame	ENST00000352818	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
5CDS-intron	ENST00000352818	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000341394		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000389645		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000532820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000530820		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-3CDS	ENST00000528922	ENST00000529307		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
intron-intron	ENST00000528922	ENST00000533657		TCGA	LD	UCS	TCGA-N5-A4RO-01A	CD44	chr11	35160917	+	CAPRIN1	chr11	34110942	+
Frame-shit	ENST00000392313	ENST00000324096		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000392313	ENST00000597681		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000392313	ENST00000544059		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
Frame-shit	ENST00000262815	ENST00000324096		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000262815	ENST00000597681		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
5CDS-intron	ENST00000262815	ENST00000544059		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
3UTR-3CDS	ENST00000586189	ENST00000324096		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
3UTR-intron	ENST00000586189	ENST00000597681		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
3UTR-intron	ENST00000586189	ENST00000544059		TCGA	LD	UCS	TCGA-N5-A4RO-01A	MAU2	chr19	19446996	+	MAP1S	chr19	17845082	+
5UTR-intron	ENST00000335999	ENST00000330828		TCGA	LD	UCS	TCGA-N5-A4RO-01A	NCKAP5L	chr12	50222105	-	C12orf60	chr12	15056941	+
5UTR-3UTR	ENST00000335999	ENST00000527783		TCGA	LD	UCS	TCGA-N5-A4RO-01A	NCKAP5L	chr12	50222105	-	C12orf60	chr12	15056941	+
5UTR-intron	ENST00000480927	ENST00000330828		TCGA	LD	UCS	TCGA-N5-A4RO-01A	NCKAP5L	chr12	50222105	-	C12orf60	chr12	15056941	+
5UTR-3UTR	ENST00000480927	ENST00000527783		TCGA	LD	UCS	TCGA-N5-A4RO-01A	NCKAP5L	chr12	50222105	-	C12orf60	chr12	15056941	+
5UTR-3CDS	ENST00000496335	ENST00000493485		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5UTR-intron	ENST00000496335	ENST00000494186		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5UTR-intron	ENST00000496335	ENST00000331410		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5UTR-intron	ENST00000496335	ENST00000483089		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5UTR-intron	ENST00000496335	ENST00000448667		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5UTR-intron	ENST00000496335	ENST00000379724		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
Frame-shit	ENST00000350498	ENST00000493485		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5CDS-intron	ENST00000350498	ENST00000494186		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5CDS-intron	ENST00000350498	ENST00000331410		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5CDS-intron	ENST00000350498	ENST00000483089		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5CDS-intron	ENST00000350498	ENST00000448667		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
5CDS-intron	ENST00000350498	ENST00000379724		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PDAP1	chr7	98995485	-	ZNF789	chr7	99077284	+
Frame-shit	ENST00000340385	ENST00000361951		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PRDX6	chr1	173450621	+	DARS2	chr1	173795825	+
5CDS-5UTR	ENST00000340385	ENST00000239457		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PRDX6	chr1	173450621	+	DARS2	chr1	173795825	+
5CDS-intron	ENST00000340385	ENST00000471476		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PRDX6	chr1	173450621	+	DARS2	chr1	173795825	+
3UTR-3CDS	ENST00000470017	ENST00000361951		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PRDX6	chr1	173450621	+	DARS2	chr1	173795825	+
3UTR-5UTR	ENST00000470017	ENST00000239457		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PRDX6	chr1	173450621	+	DARS2	chr1	173795825	+
3UTR-intron	ENST00000470017	ENST00000471476		TCGA	LD	UCS	TCGA-N5-A4RO-01A	PRDX6	chr1	173450621	+	DARS2	chr1	173795825	+
3UTR-3CDS	ENST00000372676	ENST00000278980		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000372676	ENST00000446419		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000217425	ENST00000278980		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
intron-3CDS	ENST00000217425	ENST00000446419		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000339946	ENST00000278980		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000339946	ENST00000446419		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000488143	ENST00000278980		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000488143	ENST00000446419		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000342873	ENST00000278980		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
3UTR-3CDS	ENST00000342873	ENST00000446419		TCGA	LD	UCS	TCGA-N5-A4RO-01A	WFDC2	chr20	44108734	+	COMMD7	chr20	31315949	-
5UTR-3CDS	ENST00000377990	ENST00000254227		TCGA	LD	UCS	TCGA-N5-A4RS-01A	CEP68	chr2	65283658	+	NR0B2	chr1	27238577	-
5UTR-3CDS	ENST00000546106	ENST00000254227		TCGA	LD	UCS	TCGA-N5-A4RS-01A	CEP68	chr2	65283658	+	NR0B2	chr1	27238577	-
5UTR-3CDS	ENST00000537589	ENST00000254227		TCGA	LD	UCS	TCGA-N5-A4RS-01A	CEP68	chr2	65283658	+	NR0B2	chr1	27238577	-
5UTR-3CDS	ENST00000260569	ENST00000254227		TCGA	LD	UCS	TCGA-N5-A4RS-01A	CEP68	chr2	65283658	+	NR0B2	chr1	27238577	-
intron-3CDS	ENST00000497039	ENST00000254227		TCGA	LD	UCS	TCGA-N5-A4RS-01A	CEP68	chr2	65283658	+	NR0B2	chr1	27238577	-
Frame-shit	ENST00000355237	ENST00000607016		TCGA	LD	UCS	TCGA-N5-A4RS-01A	OCLN	chr5	68800121	+	NUDT3	chr6	34263462	-
Frame-shit	ENST00000396442	ENST00000607016		TCGA	LD	UCS	TCGA-N5-A4RS-01A	OCLN	chr5	68800121	+	NUDT3	chr6	34263462	-
Frame-shit	ENST00000380766	ENST00000607016		TCGA	LD	UCS	TCGA-N5-A4RS-01A	OCLN	chr5	68800121	+	NUDT3	chr6	34263462	-
5UTR-3CDS	ENST00000538151	ENST00000607016		TCGA	LD	UCS	TCGA-N5-A4RS-01A	OCLN	chr5	68800121	+	NUDT3	chr6	34263462	-
5UTR-3CDS	ENST00000542132	ENST00000607016		TCGA	LD	UCS	TCGA-N5-A4RS-01A	OCLN	chr5	68800121	+	NUDT3	chr6	34263462	-
intron-3CDS	ENST00000514370	ENST00000607016		TCGA	LD	UCS	TCGA-N5-A4RS-01A	OCLN	chr5	68800121	+	NUDT3	chr6	34263462	-
Frame-shit	ENST00000330817	ENST00000413817		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ALG12	chr22	50297827	-	DENND6B	chr22	50757432	-
3UTR-intron	ENST00000413518	ENST00000599227		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000269829		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000594384		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000596597		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000596825		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000333581		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000599953		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000596652		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000600044		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000600220		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000596929		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000595981		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
3UTR-intron	ENST00000413518	ENST00000415203		TCGA	LD	UCS	TCGA-N5-A4RT-01A	ERVK3-1	chr19	58817582	+	ZNF544	chr19	58788549	+
In-frame	ENST00000377559	ENST00000354179		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377559	ENST00000439151		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377559	ENST00000347982		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377559	ENST00000361032		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
5CDS-intron	ENST00000377559	ENST00000511258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000265459	ENST00000354179		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000265459	ENST00000439151		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000265459	ENST00000347982		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000265459	ENST00000361032		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
5CDS-intron	ENST00000265459	ENST00000511258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000301894	ENST00000354179		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000301894	ENST00000439151		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000301894	ENST00000347982		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000301894	ENST00000361032		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
5CDS-intron	ENST00000301894	ENST00000511258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377551	ENST00000354179		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377551	ENST00000439151		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377551	ENST00000347982		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000377551	ENST00000361032		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
5CDS-intron	ENST00000377551	ENST00000511258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000409571	ENST00000354179		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000409571	ENST00000439151		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000409571	ENST00000347982		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
In-frame	ENST00000409571	ENST00000361032		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
5CDS-intron	ENST00000409571	ENST00000511258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
intron-3CDS	ENST00000496291	ENST00000354179		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
intron-3CDS	ENST00000496291	ENST00000439151		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
intron-3CDS	ENST00000496291	ENST00000347982		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
intron-3CDS	ENST00000496291	ENST00000361032		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
intron-intron	ENST00000496291	ENST00000511258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	NRXN2	chr11	64387766	-	NSD1	chr5	176666757	+
Frame-shit	ENST00000359139	ENST00000369405		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
In-frame	ENST00000359139	ENST00000369404		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
5CDS-5UTR	ENST00000359139	ENST00000482410		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
Frame-shit	ENST00000395741	ENST00000369405		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
In-frame	ENST00000395741	ENST00000369404		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
5CDS-5UTR	ENST00000395741	ENST00000482410		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
Frame-shit	ENST00000395744	ENST00000369405		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
In-frame	ENST00000395744	ENST00000369404		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
5CDS-5UTR	ENST00000395744	ENST00000482410		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
Frame-shit	ENST00000216061	ENST00000369405		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
In-frame	ENST00000216061	ENST00000369404		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
5CDS-5UTR	ENST00000216061	ENST00000482410		TCGA	LD	UCS	TCGA-N5-A4RT-01A	PPP6R2	chr22	50845304	+	ZDHHC6	chr10	114190665	-
intron-3CDS	ENST00000307980	ENST00000398645		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000307980	ENST00000529006		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000307980	ENST00000526258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000307980	ENST00000308783		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000307980	ENST00000530342		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000535644	ENST00000398645		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000535644	ENST00000529006		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000535644	ENST00000526258		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000535644	ENST00000308783		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-intron	ENST00000535644	ENST00000530342		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RAD9A	chr11	67088804	+	KDM2A	chr11	66947550	+
intron-3CDS	ENST00000315082	ENST00000421184		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723205	+	DPEP1	chr16	89704042	+
intron-3CDS	ENST00000315082	ENST00000393092		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723205	+	DPEP1	chr16	89704042	+
intron-3CDS	ENST00000315082	ENST00000261615		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723205	+	DPEP1	chr16	89704042	+
intron-3CDS	ENST00000569943	ENST00000421184		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723205	+	DPEP1	chr16	89704042	+
intron-3CDS	ENST00000569943	ENST00000393092		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723205	+	DPEP1	chr16	89704042	+
intron-3CDS	ENST00000569943	ENST00000261615		TCGA	LD	UCS	TCGA-N5-A4RT-01A	RHOT2	chr16	723205	+	DPEP1	chr16	89704042	+
Frame-shit	ENST00000394919	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000394919	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000394919	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000342444	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000342444	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000317168	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000317168	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000317168	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000317168	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000317168	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000317168	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000545550	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000545550	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000545550	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000545550	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000545550	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000545550	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317126	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317126	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317126	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317126	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000317126	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000317126	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000394915	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000394915	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000394915	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000394915	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
In-frame	ENST00000394915	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5CDS-intron	ENST00000394915	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5UTR-3CDS	ENST00000492502	ENST00000401998		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5UTR-3CDS	ENST00000492502	ENST00000361114		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5UTR-3CDS	ENST00000492502	ENST00000398761		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5UTR-3CDS	ENST00000492502	ENST00000418483		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5UTR-3CDS	ENST00000492502	ENST00000398763		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
5UTR-intron	ENST00000492502	ENST00000604025		TCGA	LD	UCS	TCGA-N5-A4RU-01A	ASCC1	chr10	73972945	-	MICU1	chr10	74183129	-
Frame-shit	ENST00000392562	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392562	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392562	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
5CDS-intron	ENST00000392562	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000316804	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000316804	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000316804	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
5CDS-intron	ENST00000316804	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000316615	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000316615	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000316615	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
5CDS-intron	ENST00000316615	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392563	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392563	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392563	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
5CDS-intron	ENST00000392563	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392564	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392564	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000392564	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
5CDS-intron	ENST00000392564	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000578961	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000578961	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
Frame-shit	ENST00000578961	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
5CDS-intron	ENST00000578961	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
intron-3CDS	ENST00000462266	ENST00000293217		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
intron-3CDS	ENST00000462266	ENST00000537812		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
intron-3CDS	ENST00000462266	ENST00000301608		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
intron-intron	ENST00000462266	ENST00000591857		TCGA	LD	UCS	TCGA-N5-A4RU-01A	GRB2	chr17	73389632	-	ACOX1	chr17	73945978	-
In-frame	ENST00000319410	ENST00000223864		TCGA	LD	UCS	TCGA-N5-A4RV-01A	KARS	chr16	75674082	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000319410	ENST00000482696		TCGA	LD	UCS	TCGA-N5-A4RV-01A	KARS	chr16	75674082	-	PLGRKT	chr9	5361888	-
Frame-shit	ENST00000302445	ENST00000223864		TCGA	LD	UCS	TCGA-N5-A4RV-01A	KARS	chr16	75674082	-	PLGRKT	chr9	5361888	-
5CDS-5UTR	ENST00000302445	ENST00000482696		TCGA	LD	UCS	TCGA-N5-A4RV-01A	KARS	chr16	75674082	-	PLGRKT	chr9	5361888	-
intron-3CDS	ENST00000568378	ENST00000223864		TCGA	LD	UCS	TCGA-N5-A4RV-01A	KARS	chr16	75674082	-	PLGRKT	chr9	5361888	-
intron-5UTR	ENST00000568378	ENST00000482696		TCGA	LD	UCS	TCGA-N5-A4RV-01A	KARS	chr16	75674082	-	PLGRKT	chr9	5361888	-
5CDS-3UTR	ENST00000394524	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000394524	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000394524	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000394524	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000454265	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000454265	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000454265	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000454265	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000394526	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000394526	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000394526	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000394526	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000429180	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000429180	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000429180	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000429180	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000296402	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000296402	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000296402	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000296402	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000418639	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000418639	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000418639	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000418639	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000511664	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000511664	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000511664	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000511664	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000342666	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000342666	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000342666	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000342666	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000515496	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000515496	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000515496	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000515496	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000514328	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000514328	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000514328	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000514328	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000394522	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000394522	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000394522	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000394522	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000505990	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000505990	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000505990	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000505990	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000379773	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000379773	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000379773	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000379773	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-3UTR	ENST00000508738	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000508738	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-5UTR	ENST00000508738	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
5CDS-intron	ENST00000508738	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
intron-3UTR	ENST00000509907	ENST00000487556		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
intron-5UTR	ENST00000509907	ENST00000372517		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
intron-5UTR	ENST00000509907	ENST00000372514		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
intron-intron	ENST00000509907	ENST00000328249		TCGA	LD	UCS	TCGA-N5-A59E-01A	CAMK2D	chr4	114381303	-	ERMAP	chr1	43291294	+
Frame-shit	ENST00000327300	ENST00000371429		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000327300	ENST00000540001		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000327300	ENST00000537333		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000327300	ENST00000234725		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-intron	ENST00000327300	ENST00000480952		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
3UTR-3CDS	ENST00000307714	ENST00000371429		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
3UTR-3UTR	ENST00000307714	ENST00000540001		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
3UTR-3UTR	ENST00000307714	ENST00000537333		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
3UTR-3UTR	ENST00000307714	ENST00000234725		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
3UTR-intron	ENST00000307714	ENST00000480952		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
Frame-shit	ENST00000492989	ENST00000371429		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000492989	ENST00000540001		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000492989	ENST00000537333		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-3UTR	ENST00000492989	ENST00000234725		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5CDS-intron	ENST00000492989	ENST00000480952		TCGA	LD	UCS	TCGA-N5-A59E-01A	KHDRBS1	chr1	32479978	+	NDC1	chr1	54238162	-
5UTR-5UTR	ENST00000265192	ENST00000302517		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
5UTR-5UTR	ENST00000265192	ENST00000511048		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
5UTR-intron	ENST00000265192	ENST00000515038		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
3UTR-5UTR	ENST00000511381	ENST00000302517		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
3UTR-5UTR	ENST00000511381	ENST00000511048		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
3UTR-intron	ENST00000511381	ENST00000515038		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
5UTR-5UTR	ENST00000511706	ENST00000302517		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
5UTR-5UTR	ENST00000511706	ENST00000511048		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
5UTR-intron	ENST00000511706	ENST00000515038		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
intron-5UTR	ENST00000394795	ENST00000302517		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
intron-5UTR	ENST00000394795	ENST00000511048		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
intron-intron	ENST00000394795	ENST00000515038		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
intron-5UTR	ENST00000510080	ENST00000302517		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
intron-5UTR	ENST00000510080	ENST00000511048		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
intron-intron	ENST00000510080	ENST00000515038		TCGA	LD	UCS	TCGA-N5-A59E-01A	PAIP2	chr5	138677669	+	CXXC5	chr5	139059949	+
5CDS-intron	ENST00000393799	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000393799	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
intron-intron	ENST00000530427	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
intron-intron	ENST00000530427	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000393800	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000393800	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000534534	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000534534	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000524845	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000524845	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000265637	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000265637	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000524904	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000524904	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000393801	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000393801	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000265636	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000265636	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000529710	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000529710	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000527403	ENST00000538401		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
5CDS-intron	ENST00000527403	ENST00000265643		TCGA	LD	UCS	TCGA-N5-A59E-01A	PPP6R3	chr11	68338572	+	GAL	chr11	68458385	+
In-frame	ENST00000528443	ENST00000591776		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000528443	ENST00000469257		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
5CDS-intron	ENST00000528443	ENST00000310837		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000271583	ENST00000591776		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000271583	ENST00000469257		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
5CDS-intron	ENST00000271583	ENST00000310837		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000606911	ENST00000591776		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000606911	ENST00000469257		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
5CDS-intron	ENST00000606911	ENST00000310837		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000435319	ENST00000591776		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
In-frame	ENST00000435319	ENST00000469257		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
5CDS-intron	ENST00000435319	ENST00000310837		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
3UTR-3CDS	ENST00000474875	ENST00000591776		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
3UTR-3CDS	ENST00000474875	ENST00000469257		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
3UTR-intron	ENST00000474875	ENST00000310837		TCGA	LD	UCS	TCGA-N5-A59E-01A	TOR1AIP1	chr1	179877808	+	EIF1	chr17	39846030	+
intron-3CDS	ENST00000378707	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378707	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378707	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378707	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000378707	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000359836	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000359836	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000359836	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000359836	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000359836	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000541735	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000541735	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000541735	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000541735	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000541735	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000343523	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000343523	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000343523	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000343523	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000343523	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000378677	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000378677	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000378677	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000378677	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000378677	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000357033	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000357033	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000357033	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
In-frame	ENST00000357033	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000357033	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000474231	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000474231	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000474231	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000474231	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000474231	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378723	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378723	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378723	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378723	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000378723	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378702	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378702	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378702	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378702	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000378702	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000361471	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000361471	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000361471	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000361471	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000361471	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378680	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378680	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378680	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000378680	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000378680	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000288447	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000288447	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000288447	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000288447	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000288447	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000445312	ENST00000378482		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000445312	ENST00000422612		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000445312	ENST00000545599		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000445312	ENST00000286824		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000445312	ENST00000488893		TCGA	LD	UCS	TCGA-N5-A59F-01A	DMD	chrX	32235033	-	TSPAN7	chrX	38525375	+
intron-5UTR	ENST00000531709	ENST00000488299		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000531709	ENST00000380843		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-intron	ENST00000531709	ENST00000380851		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
5CDS-5UTR	ENST00000294172	ENST00000488299		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
5CDS-5UTR	ENST00000294172	ENST00000380843		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
5CDS-intron	ENST00000294172	ENST00000380851		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
5CDS-5UTR	ENST00000532297	ENST00000488299		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
5CDS-5UTR	ENST00000532297	ENST00000380843		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
5CDS-intron	ENST00000532297	ENST00000380851		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000533048	ENST00000488299		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000533048	ENST00000380843		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-intron	ENST00000533048	ENST00000380851		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000531131	ENST00000488299		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000531131	ENST00000380843		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-intron	ENST00000531131	ENST00000380851		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000439713	ENST00000488299		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-5UTR	ENST00000439713	ENST00000380843		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
intron-intron	ENST00000439713	ENST00000380851		TCGA	LD	UCS	TCGA-N5-A59F-01A	NXF1	chr11	62567849	-	IDH3B	chr20	2639483	-
In-frame	ENST00000378536	ENST00000378756		TCGA	LD	UCS	TCGA-N5-A59F-01A	SKI	chr1	2161174	+	ATAD3A	chr1	1454301	+
In-frame	ENST00000378536	ENST00000378755		TCGA	LD	UCS	TCGA-N5-A59F-01A	SKI	chr1	2161174	+	ATAD3A	chr1	1454301	+
In-frame	ENST00000378536	ENST00000536055		TCGA	LD	UCS	TCGA-N5-A59F-01A	SKI	chr1	2161174	+	ATAD3A	chr1	1454301	+
intron-3CDS	ENST00000478223	ENST00000378756		TCGA	LD	UCS	TCGA-N5-A59F-01A	SKI	chr1	2161174	+	ATAD3A	chr1	1454301	+
intron-3CDS	ENST00000478223	ENST00000378755		TCGA	LD	UCS	TCGA-N5-A59F-01A	SKI	chr1	2161174	+	ATAD3A	chr1	1454301	+
intron-3CDS	ENST00000478223	ENST00000536055		TCGA	LD	UCS	TCGA-N5-A59F-01A	SKI	chr1	2161174	+	ATAD3A	chr1	1454301	+
5UTR-3CDS	ENST00000585421	ENST00000269097		TCGA	LD	UCS	TCGA-N5-A59F-01A	TIMP2	chr17	76869901	-	G6PC3	chr17	42151528	+
5UTR-3CDS	ENST00000536189	ENST00000269097		TCGA	LD	UCS	TCGA-N5-A59F-01A	TIMP2	chr17	76869901	-	G6PC3	chr17	42151528	+
Frame-shit	ENST00000262768	ENST00000269097		TCGA	LD	UCS	TCGA-N5-A59F-01A	TIMP2	chr17	76869901	-	G6PC3	chr17	42151528	+
5UTR-3CDS	ENST00000586057	ENST00000269097		TCGA	LD	UCS	TCGA-N5-A59F-01A	TIMP2	chr17	76869901	-	G6PC3	chr17	42151528	+
Frame-shit	ENST00000267102	ENST00000336023		TCGA	LD	UCS	TCGA-N6-A4V9-01A	LMBR1L	chr12	49497470	-	TUBA1B	chr12	49523505	-
Frame-shit	ENST00000547382	ENST00000336023		TCGA	LD	UCS	TCGA-N6-A4V9-01A	LMBR1L	chr12	49497470	-	TUBA1B	chr12	49523505	-
Frame-shit	ENST00000395141	ENST00000336023		TCGA	LD	UCS	TCGA-N6-A4V9-01A	LMBR1L	chr12	49497470	-	TUBA1B	chr12	49523505	-
intron-3CDS	ENST00000553204	ENST00000336023		TCGA	LD	UCS	TCGA-N6-A4V9-01A	LMBR1L	chr12	49497470	-	TUBA1B	chr12	49523505	-
5CDS-3UTR	ENST00000440884	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000440884	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000416682	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000416682	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000429436	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000429436	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000303622	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000303622	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000216288	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000216288	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000553942	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000553942	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000335102	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
5CDS-3UTR	ENST00000335102	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
intron-3UTR	ENST00000561071	ENST00000532620		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
intron-3UTR	ENST00000561071	ENST00000608857		TCGA	LD	UCS	TCGA-N6-A4V9-01A	MARK3	chr14	103923549	+	TSGA10IP	chr11	65713186	+
intron-3CDS	ENST00000529225	ENST00000528125		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-3CDS	ENST00000529225	ENST00000260276		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-intron	ENST00000529225	ENST00000530214		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-intron	ENST00000529225	ENST00000529270		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
In-frame	ENST00000440460	ENST00000528125		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
In-frame	ENST00000440460	ENST00000260276		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
5CDS-intron	ENST00000440460	ENST00000530214		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
5CDS-intron	ENST00000440460	ENST00000529270		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
3UTR-3CDS	ENST00000389821	ENST00000528125		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
3UTR-3CDS	ENST00000389821	ENST00000260276		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
3UTR-intron	ENST00000389821	ENST00000530214		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
3UTR-intron	ENST00000389821	ENST00000529270		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
In-frame	ENST00000531396	ENST00000528125		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
In-frame	ENST00000531396	ENST00000260276		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
5CDS-intron	ENST00000531396	ENST00000530214		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
5CDS-intron	ENST00000531396	ENST00000529270		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-3CDS	ENST00000315253	ENST00000528125		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-3CDS	ENST00000315253	ENST00000260276		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-intron	ENST00000315253	ENST00000530214		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
intron-intron	ENST00000315253	ENST00000529270		TCGA	LD	UCS	TCGA-N6-A4VC-01A	DIXDC1	chr11	111808283	+	C11orf1	chr11	111753860	+
Frame-shit	ENST00000217109	ENST00000023939		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
Frame-shit	ENST00000217109	ENST00000395881		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
Frame-shit	ENST00000217109	ENST00000357348		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
5CDS-intron	ENST00000217109	ENST00000484084		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
5CDS-intron	ENST00000217109	ENST00000435342		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
3UTR-3CDS	ENST00000493039	ENST00000023939		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
3UTR-3CDS	ENST00000493039	ENST00000395881		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
3UTR-3CDS	ENST00000493039	ENST00000357348		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
3UTR-intron	ENST00000493039	ENST00000484084		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
3UTR-intron	ENST00000493039	ENST00000435342		TCGA	LD	UCS	TCGA-N6-A4VE-01A	CSTF1	chr20	54970777	+	RTFDC1	chr20	55088371	+
5CDS-5UTR	ENST00000215071	ENST00000541714		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-intron	ENST00000215071	ENST00000539908		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000215071	ENST00000382008		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000215071	ENST00000589378		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000215071	ENST00000262968		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000215071	ENST00000587686		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-intron	ENST00000215071	ENST00000587641		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000602911	ENST00000541714		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-intron	ENST00000602911	ENST00000539908		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000602911	ENST00000382008		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000602911	ENST00000589378		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000602911	ENST00000262968		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-5UTR	ENST00000602911	ENST00000587686		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
5CDS-intron	ENST00000602911	ENST00000587641		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-5UTR	ENST00000592035	ENST00000541714		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-intron	ENST00000592035	ENST00000539908		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-5UTR	ENST00000592035	ENST00000382008		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-5UTR	ENST00000592035	ENST00000589378		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-5UTR	ENST00000592035	ENST00000262968		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-5UTR	ENST00000592035	ENST00000587686		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
intron-intron	ENST00000592035	ENST00000587641		TCGA	LD	UCS	TCGA-N6-A4VE-01A	PSMD8	chr19	38865601	+	TJP3	chr19	3728422	+
3UTR-3UTR	ENST00000426585	ENST00000441006		TCGA	LD	UCS	TCGA-N6-A4VE-01A	TPTEP1	chr22	17083105	+	CECR7	chr22	17525763	+
In-frame	ENST00000390006	ENST00000331483		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000390006	ENST00000576390		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000390006	ENST00000439918		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
5CDS-intron	ENST00000390006	ENST00000472244		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000309794	ENST00000331483		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000309794	ENST00000576390		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000309794	ENST00000439918		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
5CDS-intron	ENST00000309794	ENST00000472244		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000345415	ENST00000331483		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000345415	ENST00000576390		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000345415	ENST00000439918		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
5CDS-intron	ENST00000345415	ENST00000472244		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000457415	ENST00000331483		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000457415	ENST00000576390		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000457415	ENST00000439918		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
5CDS-intron	ENST00000457415	ENST00000472244		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000412079	ENST00000331483		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000412079	ENST00000576390		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
In-frame	ENST00000412079	ENST00000439918		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
5CDS-intron	ENST00000412079	ENST00000472244		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
intron-3CDS	ENST00000581743	ENST00000331483		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
intron-3CDS	ENST00000581743	ENST00000576390		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
intron-3CDS	ENST00000581743	ENST00000439918		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
intron-intron	ENST00000581743	ENST00000472244		TCGA	LD	UCS	TCGA-N6-A4VF-01A	NARF	chr17	80439087	+	P4HB	chr17	79817263	-
intron-3CDS	ENST00000292090	ENST00000225387		TCGA	LD	UCS	TCGA-N6-A4VF-01A	TLCD1	chr17	27051757	-	CRYBA1	chr17	27579082	+
intron-3CDS	ENST00000394933	ENST00000225387		TCGA	LD	UCS	TCGA-N6-A4VF-01A	TLCD1	chr17	27051757	-	CRYBA1	chr17	27579082	+
5CDS-intron	ENST00000394670	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394670	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000321233	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000394673	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000341711	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000342555	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
5CDS-intron	ENST00000577908	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000333942		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000358365		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000583994		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000545287		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000354266		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000394692		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000581094		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
intron-intron	ENST00000584416	ENST00000580976		TCGA	LD	UCS	TCGA-N6-A4VF-01A	ZNF207	chr17	30678931	+	RHOT1	chr17	30580104	+
Frame-shit	ENST00000261667	ENST00000361840		TCGA	LD	UCS	TCGA-N6-A4VG-01A	KPNA3	chr13	50366574	-	SPRYD7	chr13	50505270	-
5CDS-intron	ENST00000261667	ENST00000378195		TCGA	LD	UCS	TCGA-N6-A4VG-01A	KPNA3	chr13	50366574	-	SPRYD7	chr13	50505270	-
5CDS-5UTR	ENST00000261667	ENST00000492258		TCGA	LD	UCS	TCGA-N6-A4VG-01A	KPNA3	chr13	50366574	-	SPRYD7	chr13	50505270	-
intron-intron	ENST00000559624	ENST00000249760		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559624	ENST00000490194		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559624	ENST00000487418		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559624	ENST00000479013		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000382727	ENST00000249760		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000382727	ENST00000490194		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000382727	ENST00000487418		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000382727	ENST00000479013		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000263791	ENST00000249760		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000263791	ENST00000490194		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000263791	ENST00000487418		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-intron	ENST00000263791	ENST00000479013		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000560648	ENST00000249760		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000560648	ENST00000490194		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000560648	ENST00000487418		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000560648	ENST00000479013		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559311	ENST00000249760		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559311	ENST00000490194		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559311	ENST00000487418		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
intron-intron	ENST00000559311	ENST00000479013		TCGA	LD	UCS	TCGA-N7-A4Y5-01A	EIF2AK4	chr15	40284430	+	IVD	chr15	40727616	+
5CDS-5UTR	ENST00000600328	ENST00000597960		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600328	ENST00000610101		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600328	ENST00000596558		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600328	ENST00000222308		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600328	ENST00000608443		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600328	ENST00000453489		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600359	ENST00000597960		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600359	ENST00000610101		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600359	ENST00000596558		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600359	ENST00000222308		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600359	ENST00000608443		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
5CDS-5UTR	ENST00000600359	ENST00000453489		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000392413	ENST00000597960		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000392413	ENST00000610101		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000392413	ENST00000596558		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000392413	ENST00000222308		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000392413	ENST00000608443		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
intron-5UTR	ENST00000392413	ENST00000453489		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	KIAA1683	chr19	18375734	-	FKBP8	chr19	18652805	-
In-frame	ENST00000311275	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000311275	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000311275	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000311275	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000311275	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000360911	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000360911	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000360911	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000360911	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000360911	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000458360	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000458360	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000458360	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000458360	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000458360	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000262975	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000262975	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000262975	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000262975	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000262975	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000471951	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000471951	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000471951	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000471951	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000471951	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000352431	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000352431	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000352431	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000352431	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000352431	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000396281	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000396281	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000396281	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000396281	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000396281	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000446994	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000446994	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000446994	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000446994	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000446994	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000536340	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000536340	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000536340	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000536340	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000536340	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000355972	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000355972	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000355972	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000355972	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000355972	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000540497	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000540497	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000540497	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000540497	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000540497	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000461685	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000461685	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000461685	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000461685	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000461685	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
Frame-shit	ENST00000372023	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000372023	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000372023	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000372023	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-3UTR	ENST00000372023	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
intron-3CDS	ENST00000468376	ENST00000372676		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
intron-intron	ENST00000468376	ENST00000217425		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
intron-intron	ENST00000468376	ENST00000339946		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
intron-3UTR	ENST00000468376	ENST00000488143		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
intron-3UTR	ENST00000468376	ENST00000342873		TCGA	LD	UCS	TCGA-N7-A4Y8-01A	ZMYND8	chr20	45976600	-	WFDC2	chr20	44108582	+
5CDS-intron	ENST00000532090	ENST00000530157		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-intron	ENST00000532090	ENST00000525451		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-intron	ENST00000532090	ENST00000308162		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000532090	ENST00000527344		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000532090	ENST00000531407		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000532090	ENST00000524553		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000532090	ENST00000534769		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
5CDS-5UTR	ENST00000532090	ENST00000531413		TCGA	LD	UCS	TCGA-N7-A59B-01A	AP5B1	chr11	65547913	-	CFL1	chr11	65623713	-
intron-3CDS	ENST00000486901	ENST00000270792		TCGA	LD	UCS	TCGA-N7-A59B-01A	HSPG2	chr1	22207832	-	SH3BGRL3	chr1	26607256	+
intron-3CDS	ENST00000486901	ENST00000319041		TCGA	LD	UCS	TCGA-N7-A59B-01A	HSPG2	chr1	22207832	-	SH3BGRL3	chr1	26607256	+
In-frame	ENST00000374695	ENST00000270792		TCGA	LD	UCS	TCGA-N7-A59B-01A	HSPG2	chr1	22207832	-	SH3BGRL3	chr1	26607256	+
Frame-shit	ENST00000374695	ENST00000319041		TCGA	LD	UCS	TCGA-N7-A59B-01A	HSPG2	chr1	22207832	-	SH3BGRL3	chr1	26607256	+
intron-3CDS	ENST00000430507	ENST00000270792		TCGA	LD	UCS	TCGA-N7-A59B-01A	HSPG2	chr1	22207832	-	SH3BGRL3	chr1	26607256	+
intron-3CDS	ENST00000430507	ENST00000319041		TCGA	LD	UCS	TCGA-N7-A59B-01A	HSPG2	chr1	22207832	-	SH3BGRL3	chr1	26607256	+
5CDS-5UTR	ENST00000361757	ENST00000355848		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000361757	ENST00000407324		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000361757	ENST00000410067		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000361757	ENST00000409302		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000361757	ENST00000470189		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000587024	ENST00000355848		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000587024	ENST00000407324		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000587024	ENST00000410067		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000587024	ENST00000409302		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
5CDS-5UTR	ENST00000587024	ENST00000470189		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
intron-5UTR	ENST00000438103	ENST00000355848		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
intron-5UTR	ENST00000438103	ENST00000407324		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
intron-5UTR	ENST00000438103	ENST00000410067		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
intron-5UTR	ENST00000438103	ENST00000409302		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
intron-5UTR	ENST00000438103	ENST00000470189		TCGA	LD	UCS	TCGA-N7-A59B-01A	SBNO2	chr19	1147308	-	C1D	chr2	68274451	-
In-frame	ENST00000520381	ENST00000522909		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
In-frame	ENST00000520381	ENST00000324682		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
5CDS-intron	ENST00000520381	ENST00000517834		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
In-frame	ENST00000262215	ENST00000522909		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
In-frame	ENST00000262215	ENST00000324682		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
5CDS-intron	ENST00000262215	ENST00000517834		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
intron-3CDS	ENST00000517955	ENST00000522909		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
intron-3CDS	ENST00000517955	ENST00000324682		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
intron-intron	ENST00000517955	ENST00000517834		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
intron-3CDS	ENST00000518230	ENST00000522909		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
intron-3CDS	ENST00000518230	ENST00000324682		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
intron-intron	ENST00000518230	ENST00000517834		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ARFGEF1	chr8	68163534	-	PPP1R42	chr8	67926827	-
5CDS-intron	ENST00000311234	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-5UTR	ENST00000311234	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-intron	ENST00000398119	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-5UTR	ENST00000398119	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
intron-intron	ENST00000497989	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
intron-5UTR	ENST00000497989	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5UTR-intron	ENST00000425000	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5UTR-5UTR	ENST00000425000	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
intron-intron	ENST00000490542	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
intron-5UTR	ENST00000490542	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-intron	ENST00000463928	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-5UTR	ENST00000463928	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-intron	ENST00000420668	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-5UTR	ENST00000420668	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5UTR-intron	ENST00000491723	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5UTR-5UTR	ENST00000491723	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
intron-intron	ENST00000442263	ENST00000355568		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
intron-5UTR	ENST00000442263	ENST00000529080		TCGA	LD	UCS	TCGA-N8-A4PI-01A	INTS6	chr13	52025161	-	NEK5	chr13	52611354	-
5CDS-intron	ENST00000537992	ENST00000404938		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000537992	ENST00000258738		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000537992	ENST00000477094		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000537992	ENST00000443026		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000537992	ENST00000406935		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000222573	ENST00000404938		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000222573	ENST00000258738		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000222573	ENST00000477094		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000222573	ENST00000443026		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5CDS-intron	ENST00000222573	ENST00000406935		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
intron-intron	ENST00000460204	ENST00000404938		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
intron-intron	ENST00000460204	ENST00000258738		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
intron-intron	ENST00000460204	ENST00000477094		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
intron-intron	ENST00000460204	ENST00000443026		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
intron-intron	ENST00000460204	ENST00000406935		TCGA	LD	UCS	TCGA-N8-A4PI-01A	ITGB8	chr7	20421508	+	ABCB5	chr7	20815598	+
5UTR-5UTR	ENST00000362074	ENST00000357836		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-5UTR	ENST00000362074	ENST00000336751		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-5UTR	ENST00000362074	ENST00000497365		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-intron	ENST00000362074	ENST00000475797		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-5UTR	ENST00000344859	ENST00000357836		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-5UTR	ENST00000344859	ENST00000336751		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-5UTR	ENST00000344859	ENST00000497365		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
5UTR-intron	ENST00000344859	ENST00000475797		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-5UTR	ENST00000369340	ENST00000357836		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-5UTR	ENST00000369340	ENST00000336751		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-5UTR	ENST00000369340	ENST00000497365		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-intron	ENST00000369340	ENST00000475797		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-5UTR	ENST00000479995	ENST00000357836		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-5UTR	ENST00000479995	ENST00000336751		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-5UTR	ENST00000479995	ENST00000497365		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
intron-intron	ENST00000479995	ENST00000475797		TCGA	LD	UCS	TCGA-N8-A4PI-01A	NOTCH2NL	chr1	145209436	-	HFE2	chr1	145415279	-
Frame-shit	ENST00000377892	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377892	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377892	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377892	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377890	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377890	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377890	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377890	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377891	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377891	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000377891	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000377891	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000377889	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000377889	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000377889	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000377889	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000535296	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000535296	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
Frame-shit	ENST00000535296	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
5CDS-intron	ENST00000535296	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000338663	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000338663	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000338663	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000338663	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000538682	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000538682	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000538682	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000538682	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000536981	ENST00000415229		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000536981	ENST00000535727		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000536981	ENST00000301776		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-intron	ENST00000536981	ENST00000528206		TCGA	LD	UCS	TCGA-N8-A4PI-01A	SLC3A2	chr11	62639141	+	ASRGL1	chr11	62156605	+
intron-3CDS	ENST00000577886	ENST00000321105		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-intron	ENST00000577886	ENST00000540524		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000577886	ENST00000542570		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000577886	ENST00000582230		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-3CDS	ENST00000416464	ENST00000321105		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-intron	ENST00000416464	ENST00000540524		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000416464	ENST00000542570		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000416464	ENST00000582230		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
Frame-shit	ENST00000578237	ENST00000321105		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
5CDS-intron	ENST00000578237	ENST00000540524		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
5CDS-5UTR	ENST00000578237	ENST00000542570		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
5CDS-5UTR	ENST00000578237	ENST00000582230		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
Frame-shit	ENST00000336708	ENST00000321105		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
5CDS-intron	ENST00000336708	ENST00000540524		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
5CDS-5UTR	ENST00000336708	ENST00000542570		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
5CDS-5UTR	ENST00000336708	ENST00000582230		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-3CDS	ENST00000579219	ENST00000321105		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-intron	ENST00000579219	ENST00000540524		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000579219	ENST00000542570		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000579219	ENST00000582230		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-3CDS	ENST00000581224	ENST00000321105		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-intron	ENST00000581224	ENST00000540524		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000581224	ENST00000542570		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
intron-5UTR	ENST00000581224	ENST00000582230		TCGA	LD	UCS	TCGA-N8-A4PI-01A	TRIM16	chr17	15554405	-	TOP3A	chr17	18212255	-
Frame-shit	ENST00000263119	ENST00000345044		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000263119	ENST00000403208		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000263119	ENST00000398356		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000263119	ENST00000405847		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-3UTR	ENST00000263119	ENST00000467660		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-3UTR	ENST00000263119	ENST00000316185		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
Frame-shit	ENST00000405822	ENST00000345044		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000405822	ENST00000403208		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000405822	ENST00000398356		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000405822	ENST00000405847		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-3UTR	ENST00000405822	ENST00000467660		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-3UTR	ENST00000405822	ENST00000316185		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
Frame-shit	ENST00000398319	ENST00000345044		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000398319	ENST00000403208		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000398319	ENST00000398356		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-intron	ENST00000398319	ENST00000405847		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-3UTR	ENST00000398319	ENST00000467660		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
5CDS-3UTR	ENST00000398319	ENST00000316185		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-3CDS	ENST00000337989	ENST00000345044		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-intron	ENST00000337989	ENST00000403208		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-intron	ENST00000337989	ENST00000398356		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-intron	ENST00000337989	ENST00000405847		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-3UTR	ENST00000337989	ENST00000467660		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-3UTR	ENST00000337989	ENST00000316185		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-3CDS	ENST00000485008	ENST00000345044		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-intron	ENST00000485008	ENST00000403208		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-intron	ENST00000485008	ENST00000398356		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-intron	ENST00000485008	ENST00000405847		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-3UTR	ENST00000485008	ENST00000467660		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
intron-3UTR	ENST00000485008	ENST00000316185		TCGA	LD	UCS	TCGA-N8-A4PL-01A	CABIN1	chr22	24515665	+	SLC2A11	chr22	24224646	+
In-frame	ENST00000595085	ENST00000269967		TCGA	LD	UCS	TCGA-N8-A4PM-01A	BCKDHA	chr19	41920062	+	CCDC97	chr19	41822289	+
In-frame	ENST00000269980	ENST00000269967		TCGA	LD	UCS	TCGA-N8-A4PM-01A	BCKDHA	chr19	41920062	+	CCDC97	chr19	41822289	+
In-frame	ENST00000457836	ENST00000269967		TCGA	LD	UCS	TCGA-N8-A4PM-01A	BCKDHA	chr19	41920062	+	CCDC97	chr19	41822289	+
intron-3CDS	ENST00000535632	ENST00000269967		TCGA	LD	UCS	TCGA-N8-A4PM-01A	BCKDHA	chr19	41920062	+	CCDC97	chr19	41822289	+
5CDS-intron	ENST00000371941	ENST00000371741		TCGA	LD	UCS	TCGA-N8-A4PM-01A	PREX1	chr20	47361562	-	KCNB1	chr20	47927336	-
5CDS-intron	ENST00000396220	ENST00000371741		TCGA	LD	UCS	TCGA-N8-A4PM-01A	PREX1	chr20	47361562	-	KCNB1	chr20	47927336	-
intron-intron	ENST00000496915	ENST00000371741		TCGA	LD	UCS	TCGA-N8-A4PM-01A	PREX1	chr20	47361562	-	KCNB1	chr20	47927336	-
intron-5UTR	ENST00000375715	ENST00000380274		TCGA	LD	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94645540	-	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000375715	ENST00000380272		TCGA	LD	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94645540	-	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000375708	ENST00000380274		TCGA	LD	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94645540	-	FAM50B	chr6	3850023	+
intron-5UTR	ENST00000375708	ENST00000380272		TCGA	LD	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94645540	-	FAM50B	chr6	3850023	+
5UTR-5UTR	ENST00000550066	ENST00000380274		TCGA	LD	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94645540	-	FAM50B	chr6	3850023	+
5UTR-5UTR	ENST00000550066	ENST00000380272		TCGA	LD	UCS	TCGA-N8-A4PM-01A	ROR2	chr9	94645540	-	FAM50B	chr6	3850023	+
In-frame	ENST00000357260	ENST00000358791		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000357260	ENST00000262591		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000357260	ENST00000371608		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000357260	ENST00000609336		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
5CDS-intron	ENST00000357260	ENST00000485049		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
In-frame	ENST00000534365	ENST00000358791		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000534365	ENST00000262591		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000534365	ENST00000371608		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
Frame-shit	ENST00000534365	ENST00000609336		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
5CDS-intron	ENST00000534365	ENST00000485049		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000444059	ENST00000358791		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000444059	ENST00000262591		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000444059	ENST00000371608		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000444059	ENST00000609336		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-intron	ENST00000444059	ENST00000485049		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000412270	ENST00000358791		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000412270	ENST00000262591		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000412270	ENST00000371608		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3CDS	ENST00000412270	ENST00000609336		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-intron	ENST00000412270	ENST00000485049		TCGA	LD	UCS	TCGA-N8-A4PN-01A	FAM212B	chr1	112281808	-	BCAS4	chr20	49493023	+
intron-3UTR	ENST00000265318	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265318	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265318	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265318	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265318	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265318	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265318	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265318	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000404537	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000404537	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000404537	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000404537	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000404537	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000404537	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000404537	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000404537	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373876	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373876	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373876	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373876	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373876	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373876	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373876	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373876	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265317	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265317	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265317	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000265317	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265317	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265317	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265317	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000265317	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000603926	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000603926	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000603926	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000603926	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000603926	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000603926	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000603926	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000603926	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373873	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373873	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373873	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000373873	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373873	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373873	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373873	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000373873	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000289656	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000289656	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000289656	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000289656	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000289656	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000289656	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000289656	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000289656	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000491370	ENST00000381395		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000491370	ENST00000381406		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000491370	ENST00000416167		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3UTR	ENST00000491370	ENST00000300632		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000491370	ENST00000434045		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000491370	ENST00000381392		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000491370	ENST00000381389		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-intron	ENST00000491370	ENST00000418738		TCGA	LD	UCS	TCGA-N8-A4PN-01A	OBSL1	chr2	220423053	-	IGF2	chr11	2151407	-
intron-3CDS	ENST00000475480	ENST00000358432		TCGA	LD	UCS	TCGA-N8-A4PN-01A	TMEM41A	chr3	185206733	-	EPHA2	chr1	16477458	-
intron-intron	ENST00000475480	ENST00000461614		TCGA	LD	UCS	TCGA-N8-A4PN-01A	TMEM41A	chr3	185206733	-	EPHA2	chr1	16477458	-
intron-3CDS	ENST00000421852	ENST00000358432		TCGA	LD	UCS	TCGA-N8-A4PN-01A	TMEM41A	chr3	185206733	-	EPHA2	chr1	16477458	-
intron-intron	ENST00000421852	ENST00000461614		TCGA	LD	UCS	TCGA-N8-A4PN-01A	TMEM41A	chr3	185206733	-	EPHA2	chr1	16477458	-
intron-3CDS	ENST00000296254	ENST00000358432		TCGA	LD	UCS	TCGA-N8-A4PN-01A	TMEM41A	chr3	185206733	-	EPHA2	chr1	16477458	-
intron-intron	ENST00000296254	ENST00000461614		TCGA	LD	UCS	TCGA-N8-A4PN-01A	TMEM41A	chr3	185206733	-	EPHA2	chr1	16477458	-
5CDS-5UTR	ENST00000066544	ENST00000588552		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000262963		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000372412		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000348075		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000357368		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000353284		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000587303		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000588012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000592099		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000066544	ENST00000590509		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-5UTR	ENST00000531206	ENST00000588552		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000262963		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000372412		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000348075		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000357368		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000353284		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000587303		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000588012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000592099		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000531206	ENST00000590509		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-5UTR	ENST00000446365	ENST00000588552		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000262963		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000372412		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000348075		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000357368		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000353284		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000587303		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000588012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000592099		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000446365	ENST00000590509		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-5UTR	ENST00000527547	ENST00000588552		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000262963		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000372412		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000348075		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000357368		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000353284		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000587303		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000588012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000592099		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5CDS-intron	ENST00000527547	ENST00000590509		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-5UTR	ENST00000528748	ENST00000588552		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000262963		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000372412		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000348075		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000357368		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000353284		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000587303		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000588012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000592099		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-intron	ENST00000528748	ENST00000590509		TCGA	LD	UCS	TCGA-N8-A4PO-01A	CDC27	chr17	45258928	-	PTPRS	chr19	5159115	-
5UTR-3CDS	ENST00000202028	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000202028	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3UTR	ENST00000202028	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000373950	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000373950	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3UTR	ENST00000373950	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000441639	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3CDS	ENST00000441639	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
5UTR-3UTR	ENST00000441639	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373946	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373946	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000373946	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000338074	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000338074	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000338074	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373941	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000373941	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000373941	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000479336	ENST00000374012		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3CDS	ENST00000479336	ENST00000439301		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
intron-3UTR	ENST00000479336	ENST00000481202		TCGA	LD	UCS	TCGA-N8-A4PO-01A	EPB41L1	chr20	34700402	+	PHF20	chr20	34430495	+
Frame-shit	ENST00000393469	ENST00000353265		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000393469	ENST00000470488		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000423114	ENST00000353265		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000423114	ENST00000470488		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000469902	ENST00000353265		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000469902	ENST00000470488		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000314584	ENST00000353265		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
5UTR-3CDS	ENST00000314584	ENST00000470488		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000430155	ENST00000353265		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000430155	ENST00000470488		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000465475	ENST00000353265		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
intron-3CDS	ENST00000465475	ENST00000470488		TCGA	LD	UCS	TCGA-N8-A4PO-01A	SLC12A8	chr3	124896587	-	PARD6G	chr18	77960815	-
Frame-shit	ENST00000294016	ENST00000301749		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
Frame-shit	ENST00000294016	ENST00000359128		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
5CDS-5UTR	ENST00000294016	ENST00000419350		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
5CDS-5UTR	ENST00000294016	ENST00000448023		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
5CDS-5UTR	ENST00000294016	ENST00000603507		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
5CDS-intron	ENST00000294016	ENST00000324659		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
intron-3CDS	ENST00000571889	ENST00000301749		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
intron-3CDS	ENST00000571889	ENST00000359128		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
intron-5UTR	ENST00000571889	ENST00000419350		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
intron-5UTR	ENST00000571889	ENST00000448023		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
intron-5UTR	ENST00000571889	ENST00000603507		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
intron-intron	ENST00000571889	ENST00000324659		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ADCY9	chr16	4163751	-	NLRC3	chr16	3594329	-
In-frame	ENST00000417225	ENST00000378618		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000417225	ENST00000536126		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000417225	ENST00000278460		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000417225	ENST00000395460		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000417225	ENST00000378615		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-intron	ENST00000417225	ENST00000543718		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-3UTR	ENST00000417225	ENST00000527268		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
In-frame	ENST00000443527	ENST00000378618		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000443527	ENST00000536126		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000443527	ENST00000278460		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000443527	ENST00000395460		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-5UTR	ENST00000443527	ENST00000378615		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-intron	ENST00000443527	ENST00000543718		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
5CDS-3UTR	ENST00000443527	ENST00000527268		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-3CDS	ENST00000473199	ENST00000378618		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-5UTR	ENST00000473199	ENST00000536126		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-5UTR	ENST00000473199	ENST00000278460		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-5UTR	ENST00000473199	ENST00000395460		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-5UTR	ENST00000473199	ENST00000378615		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-intron	ENST00000473199	ENST00000543718		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
3UTR-3UTR	ENST00000473199	ENST00000527268		TCGA	LD	UCS	TCGA-N8-A4PP-01A	CRY2	chr11	45880424	+	C11orf49	chr11	47073939	+
In-frame	ENST00000587077	ENST00000444215		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000587077	ENST00000421545		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000392250	ENST00000444215		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000392250	ENST00000421545		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000586987	ENST00000444215		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000586987	ENST00000421545		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000342179	ENST00000444215		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
In-frame	ENST00000342179	ENST00000421545		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
intron-3CDS	ENST00000590651	ENST00000444215		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
intron-3CDS	ENST00000590651	ENST00000421545		TCGA	LD	UCS	TCGA-N8-A4PP-01A	DPY19L3	chr19	32902278	+	TDRD12	chr19	33222631	+
3UTR-intron	ENST00000307768	ENST00000383832		TCGA	LD	UCS	TCGA-N8-A4PP-01A	JAGN1	chr3	9935073	+	CPNE9	chr3	9771054	+
3UTR-intron	ENST00000307768	ENST00000383831		TCGA	LD	UCS	TCGA-N8-A4PP-01A	JAGN1	chr3	9935073	+	CPNE9	chr3	9771054	+
intron-intron	ENST00000489724	ENST00000383832		TCGA	LD	UCS	TCGA-N8-A4PP-01A	JAGN1	chr3	9935073	+	CPNE9	chr3	9771054	+
intron-intron	ENST00000489724	ENST00000383831		TCGA	LD	UCS	TCGA-N8-A4PP-01A	JAGN1	chr3	9935073	+	CPNE9	chr3	9771054	+
5CDS-intron	ENST00000260970	ENST00000260956		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000260970	ENST00000409333		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000409714	ENST00000260956		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000409714	ENST00000409333		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000462903	ENST00000260956		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000462903	ENST00000409333		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000448752	ENST00000260956		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
5CDS-intron	ENST00000448752	ENST00000409333		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
intron-intron	ENST00000482772	ENST00000260956		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
intron-intron	ENST00000482772	ENST00000409333		TCGA	LD	UCS	TCGA-N8-A4PP-01A	PPIG	chr2	170460771	+	SSB	chr2	170649083	+
In-frame	ENST00000265062	ENST00000437766		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000265062	ENST00000357720		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000265062	ENST00000221504		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000265062	ENST00000592062		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
5CDS-intron	ENST00000265062	ENST00000592892		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000482525	ENST00000437766		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000482525	ENST00000357720		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000482525	ENST00000221504		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
In-frame	ENST00000482525	ENST00000592062		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
5CDS-intron	ENST00000482525	ENST00000592892		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
intron-3CDS	ENST00000485280	ENST00000437766		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
intron-3CDS	ENST00000485280	ENST00000357720		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
intron-3CDS	ENST00000485280	ENST00000221504		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
intron-3CDS	ENST00000485280	ENST00000592062		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
intron-intron	ENST00000485280	ENST00000592892		TCGA	LD	UCS	TCGA-N8-A4PP-01A	RAB7A	chr3	128526514	+	TRMT1	chr19	13221120	-
3UTR-3CDS	ENST00000310358	ENST00000308086		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SPON1	chr11	14004500	+	THAP2	chr12	72067983	+
3UTR-intron	ENST00000310358	ENST00000547843		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SPON1	chr11	14004500	+	THAP2	chr12	72067983	+
5UTR-intron	ENST00000437941	ENST00000272321		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000437941	ENST00000409199		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000437941	ENST00000409120		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000437941	ENST00000398544		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000437941	ENST00000409562		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000437941	ENST00000409835		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000342203	ENST00000272321		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000342203	ENST00000409199		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000342203	ENST00000409120		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000342203	ENST00000398544		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000342203	ENST00000409562		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000342203	ENST00000409835		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000605755	ENST00000272321		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000605755	ENST00000409199		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000605755	ENST00000409120		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000605755	ENST00000398544		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000605755	ENST00000409562		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000605755	ENST00000409835		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000603677	ENST00000272321		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000603677	ENST00000409199		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000603677	ENST00000409120		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000603677	ENST00000398544		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000603677	ENST00000409562		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
5UTR-intron	ENST00000603677	ENST00000409835		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000370612	ENST00000272321		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000370612	ENST00000409199		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000370612	ENST00000409120		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000370612	ENST00000398544		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000370612	ENST00000409562		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
intron-intron	ENST00000370612	ENST00000409835		TCGA	LD	UCS	TCGA-N8-A4PP-01A	SSX2IP	chr1	85155837	-	WDPCP	chr2	63938725	-
Frame-shit	ENST00000261560	ENST00000456448		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ZNF430	chr19	21216990	+	OR7E24	chr19	9361761	+
Frame-shit	ENST00000599548	ENST00000456448		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ZNF430	chr19	21216990	+	OR7E24	chr19	9361761	+
In-frame	ENST00000595401	ENST00000456448		TCGA	LD	UCS	TCGA-N8-A4PP-01A	ZNF430	chr19	21216990	+	OR7E24	chr19	9361761	+
3UTR-5UTR	ENST00000481208	ENST00000357424		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	ACOT11	chr1	55008110	+	GIP	chr17	47044615	-
intron-5UTR	ENST00000343744	ENST00000357424		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	ACOT11	chr1	55008110	+	GIP	chr17	47044615	-
intron-5UTR	ENST00000371316	ENST00000357424		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	ACOT11	chr1	55008110	+	GIP	chr17	47044615	-
5UTR-3CDS	ENST00000290795	ENST00000319928		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-3CDS	ENST00000290795	ENST00000271139		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-3CDS	ENST00000290795	ENST00000371940		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-5UTR	ENST00000290795	ENST00000477318		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-3CDS	ENST00000355105	ENST00000319928		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-3CDS	ENST00000355105	ENST00000271139		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-3CDS	ENST00000355105	ENST00000371940		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
5UTR-5UTR	ENST00000355105	ENST00000477318		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
intron-3CDS	ENST00000479235	ENST00000319928		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
intron-3CDS	ENST00000479235	ENST00000271139		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
intron-3CDS	ENST00000479235	ENST00000371940		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
intron-5UTR	ENST00000479235	ENST00000477318		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	GPBP1L1	chr1	46152084	-	MOB3C	chr1	47075876	-
Frame-shit	ENST00000268712	ENST00000395811		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
Frame-shit	ENST00000268712	ENST00000444976		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
Frame-shit	ENST00000268712	ENST00000395804		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
Frame-shit	ENST00000268712	ENST00000341712		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
5CDS-intron	ENST00000268712	ENST00000395806		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
5CDS-3UTR	ENST00000268712	ENST00000395807		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
In-frame	ENST00000395851	ENST00000395811		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
In-frame	ENST00000395851	ENST00000444976		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
In-frame	ENST00000395851	ENST00000395804		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
In-frame	ENST00000395851	ENST00000341712		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
5CDS-intron	ENST00000395851	ENST00000395806		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
5CDS-3UTR	ENST00000395851	ENST00000395807		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395857	ENST00000395811		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395857	ENST00000444976		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395857	ENST00000395804		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395857	ENST00000341712		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-intron	ENST00000395857	ENST00000395806		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3UTR	ENST00000395857	ENST00000395807		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395848	ENST00000395811		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395848	ENST00000444976		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395848	ENST00000395804		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000395848	ENST00000341712		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-intron	ENST00000395848	ENST00000395806		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3UTR	ENST00000395848	ENST00000395807		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000583226	ENST00000395811		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000583226	ENST00000444976		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000583226	ENST00000395804		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3CDS	ENST00000583226	ENST00000341712		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-intron	ENST00000583226	ENST00000395806		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
intron-3UTR	ENST00000583226	ENST00000395807		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	NCOR1	chr17	16075117	-	MPRIP	chr17	16979024	+
3UTR-3CDS	ENST00000367203	ENST00000367240		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
3UTR-3CDS	ENST00000367203	ENST00000295706		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
3UTR-intron	ENST00000367203	ENST00000447715		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
3UTR-intron	ENST00000367203	ENST00000414050		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
3UTR-intron	ENST00000367203	ENST00000272198		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
3UTR-intron	ENST00000367203	ENST00000599966		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
3UTR-intron	ENST00000367203	ENST00000594572		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-3CDS	ENST00000367204	ENST00000367240		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-3CDS	ENST00000367204	ENST00000295706		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-intron	ENST00000367204	ENST00000447715		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-intron	ENST00000367204	ENST00000414050		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-intron	ENST00000367204	ENST00000272198		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-intron	ENST00000367204	ENST00000599966		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-intron	ENST00000367204	ENST00000594572		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	SOX13	chr1	204042839	+	PPFIA4	chr1	203022881	+
5UTR-3CDS	ENST00000582809	ENST00000269373		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
5UTR-5UTR	ENST00000582809	ENST00000535965		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
3UTR-3CDS	ENST00000577616	ENST00000269373		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
3UTR-5UTR	ENST00000577616	ENST00000535965		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
In-frame	ENST00000326270	ENST00000269373		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000326270	ENST00000535965		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
In-frame	ENST00000346027	ENST00000269373		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000346027	ENST00000535965		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
In-frame	ENST00000343388	ENST00000269373		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000343388	ENST00000535965		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
In-frame	ENST00000542523	ENST00000269373		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
5CDS-5UTR	ENST00000542523	ENST00000535965		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	TLK2	chr17	60558567	+	FN3KRP	chr17	80676782	+
Frame-shit	ENST00000356136	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
Frame-shit	ENST00000356136	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
Frame-shit	ENST00000356136	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
5CDS-intron	ENST00000356136	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
5UTR-3CDS	ENST00000528420	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
5UTR-3CDS	ENST00000528420	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
5UTR-3CDS	ENST00000528420	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
5UTR-intron	ENST00000528420	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000533454	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000533454	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000533454	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-intron	ENST00000533454	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000531818	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000531818	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000531818	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-intron	ENST00000531818	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000532130	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000532130	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000532130	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-intron	ENST00000532130	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000539288	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000539288	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000539288	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-intron	ENST00000539288	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000525872	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000525872	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000525872	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-intron	ENST00000525872	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000538870	ENST00000263672		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000538870	ENST00000530257		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-3CDS	ENST00000538870	ENST00000526361		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
intron-intron	ENST00000538870	ENST00000528265		TCGA	LD	UCS	TCGA-N8-A4PQ-01A	UVRAG	chr11	75572825	+	SPCS2	chr11	74687902	+
In-frame	ENST00000252699	ENST00000301244		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000252699	ENST00000587090		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000252699	ENST00000454580		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000424234	ENST00000301244		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000424234	ENST00000587090		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000424234	ENST00000454580		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
In-frame	ENST00000390009	ENST00000301244		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
5CDS-5UTR	ENST00000390009	ENST00000587090		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
5CDS-intron	ENST00000390009	ENST00000454580		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
intron-3CDS	ENST00000497637	ENST00000301244		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
intron-5UTR	ENST00000497637	ENST00000587090		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
intron-intron	ENST00000497637	ENST00000454580		TCGA	LD	UCS	TCGA-N8-A56S-01A	ACTN4	chr19	39208714	+	SPINT2	chr19	38774267	+
Frame-shit	ENST00000264607	ENST00000404910		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
In-frame	ENST00000264607	ENST00000254661		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000264607	ENST00000409726		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000264607	ENST00000403885		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000469885	ENST00000404910		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000469885	ENST00000254661		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000469885	ENST00000409726		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
3UTR-3CDS	ENST00000469885	ENST00000403885		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409297	ENST00000404910		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
In-frame	ENST00000409297	ENST00000254661		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409297	ENST00000409726		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000409297	ENST00000403885		TCGA	LD	UCS	TCGA-N8-A56S-01A	ASB1	chr2	239342336	+	RAMP1	chr2	238820170	+
Frame-shit	ENST00000209728	ENST00000225972		TCGA	LD	UCS	TCGA-N8-A56S-01A	CDC6	chr17	38450308	+	LRRC59	chr17	48465493	-
5CDS-intron	ENST00000209728	ENST00000576448		TCGA	LD	UCS	TCGA-N8-A56S-01A	CDC6	chr17	38450308	+	LRRC59	chr17	48465493	-
5CDS-3UTR	ENST00000228741	ENST00000552554		TCGA	LD	UCS	TCGA-N8-A56S-01A	ELK3	chr12	96617551	+	PGAM1P5	chr12	96043104	+
5CDS-3UTR	ENST00000552142	ENST00000552554		TCGA	LD	UCS	TCGA-N8-A56S-01A	ELK3	chr12	96617551	+	PGAM1P5	chr12	96043104	+
intron-3UTR	ENST00000549529	ENST00000552554		TCGA	LD	UCS	TCGA-N8-A56S-01A	ELK3	chr12	96617551	+	PGAM1P5	chr12	96043104	+
intron-5UTR	ENST00000508053	ENST00000381792		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000508053	ENST00000346753		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000508053	ENST00000406725		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000508053	ENST00000406856		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000508053	ENST00000442782		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000262464	ENST00000381792		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000262464	ENST00000346753		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000262464	ENST00000406725		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000262464	ENST00000406856		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000262464	ENST00000442782		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000507835	ENST00000381792		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000507835	ENST00000346753		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000507835	ENST00000406725		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000507835	ENST00000406856		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000507835	ENST00000442782		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000508989	ENST00000381792		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000508989	ENST00000346753		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000508989	ENST00000406725		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000508989	ENST00000406856		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000508989	ENST00000442782		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000511489	ENST00000381792		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-5UTR	ENST00000511489	ENST00000346753		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000511489	ENST00000406725		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000511489	ENST00000406856		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
intron-intron	ENST00000511489	ENST00000442782		TCGA	LD	UCS	TCGA-N8-A56S-01A	FBN2	chr5	127710374	-	TMPRSS6	chr22	37499562	-
Frame-shit	ENST00000307363	ENST00000309558		TCGA	LD	UCS	TCGA-N8-A56S-01A	GLB1	chr3	33087612	-	SUSD5	chr3	33216566	-
In-frame	ENST00000399402	ENST00000309558		TCGA	LD	UCS	TCGA-N8-A56S-01A	GLB1	chr3	33087612	-	SUSD5	chr3	33216566	-
Frame-shit	ENST00000445488	ENST00000309558		TCGA	LD	UCS	TCGA-N8-A56S-01A	GLB1	chr3	33087612	-	SUSD5	chr3	33216566	-
Frame-shit	ENST00000307377	ENST00000309558		TCGA	LD	UCS	TCGA-N8-A56S-01A	GLB1	chr3	33087612	-	SUSD5	chr3	33216566	-
intron-3CDS	ENST00000497796	ENST00000309558		TCGA	LD	UCS	TCGA-N8-A56S-01A	GLB1	chr3	33087612	-	SUSD5	chr3	33216566	-
5UTR-5UTR	ENST00000574590	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000574590	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000574590	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000574590	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000574590	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
5UTR-5UTR	ENST00000574590	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000575318	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000575318	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000575318	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000575318	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000575318	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000575318	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000572904	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000572904	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000572904	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000572904	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000572904	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000572904	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000262419	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000262419	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000262419	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000262419	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000262419	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000262419	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000432791	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000432791	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000432791	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000432791	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000432791	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000432791	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000393476	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000393476	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000393476	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000393476	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000393476	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000393476	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000576248	ENST00000393328		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000576248	ENST00000393331		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000576248	ENST00000347630		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000576248	ENST00000504102		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000576248	ENST00000503676		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
intron-5UTR	ENST00000576248	ENST00000513080		TCGA	LD	UCS	TCGA-N8-A56S-01A	KANSL1	chr17	44301037	-	SPOP	chr17	47700238	-
Frame-shit	ENST00000591247	ENST00000353281		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
Frame-shit	ENST00000591247	ENST00000262407		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
5CDS-intron	ENST00000591247	ENST00000377068		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
In-frame	ENST00000293406	ENST00000353281		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
In-frame	ENST00000293406	ENST00000262407		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
5CDS-intron	ENST00000293406	ENST00000377068		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
In-frame	ENST00000585388	ENST00000353281		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
In-frame	ENST00000585388	ENST00000262407		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
5CDS-intron	ENST00000585388	ENST00000377068		TCGA	LD	UCS	TCGA-N8-A56S-01A	LSM12	chr17	42141169	-	ITGA2B	chr17	42449791	-
5CDS-3UTR	ENST00000373839	ENST00000479574		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000373839	ENST00000373842		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
5CDS-5UTR	ENST00000373839	ENST00000398997		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
3UTR-3UTR	ENST00000493669	ENST00000479574		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
3UTR-5UTR	ENST00000493669	ENST00000373842		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
3UTR-5UTR	ENST00000493669	ENST00000398997		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
intron-3UTR	ENST00000373836	ENST00000479574		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
intron-5UTR	ENST00000373836	ENST00000373842		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
intron-5UTR	ENST00000373836	ENST00000398997		TCGA	LD	UCS	TCGA-N8-A56S-01A	PHACTR4	chr1	28733974	+	MED18	chr1	28657108	+
In-frame	ENST00000292478	ENST00000221480		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
In-frame	ENST00000292478	ENST00000593942		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
5CDS-5UTR	ENST00000292478	ENST00000599519		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
In-frame	ENST00000555673	ENST00000221480		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
In-frame	ENST00000555673	ENST00000593942		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
5CDS-5UTR	ENST00000555673	ENST00000599519		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
Frame-shit	ENST00000485746	ENST00000221480		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
Frame-shit	ENST00000485746	ENST00000593942		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
5CDS-5UTR	ENST00000485746	ENST00000599519		TCGA	LD	UCS	TCGA-N8-A56S-01A	PTCD1	chr7	99026726	-	PEX11G	chr19	7547097	-
intron-3CDS	ENST00000572173	ENST00000409790		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000572173	ENST00000409552		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3UTR	ENST00000572173	ENST00000465491		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-intron	ENST00000572173	ENST00000381822		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000572992	ENST00000409790		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000572992	ENST00000409552		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3UTR	ENST00000572992	ENST00000465491		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-intron	ENST00000572992	ENST00000381822		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000381820	ENST00000409790		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000381820	ENST00000409552		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3UTR	ENST00000381820	ENST00000465491		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-intron	ENST00000381820	ENST00000381822		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
In-frame	ENST00000312499	ENST00000409790		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
In-frame	ENST00000312499	ENST00000409552		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
5CDS-3UTR	ENST00000312499	ENST00000465491		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
5CDS-intron	ENST00000312499	ENST00000381822		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000576027	ENST00000409790		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3CDS	ENST00000576027	ENST00000409552		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-3UTR	ENST00000576027	ENST00000465491		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
intron-intron	ENST00000576027	ENST00000381822		TCGA	LD	UCS	TCGA-N8-A56S-01A	RMI2	chr16	11439623	+	CLEC16A	chr16	11214472	+
In-frame	ENST00000545472	ENST00000446828		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000545472	ENST00000424227		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000545472	ENST00000443863		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000545472	ENST00000535426		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000545472	ENST00000265026		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000545472	ENST00000448876		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000545472	ENST00000454237		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000545472	ENST00000438798		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000296257	ENST00000446828		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000296257	ENST00000424227		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000296257	ENST00000443863		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000296257	ENST00000535426		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000296257	ENST00000265026		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000296257	ENST00000448876		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000296257	ENST00000454237		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000296257	ENST00000438798		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000427465	ENST00000446828		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000427465	ENST00000424227		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000427465	ENST00000443863		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000427465	ENST00000535426		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
In-frame	ENST00000427465	ENST00000265026		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000427465	ENST00000448876		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000427465	ENST00000454237		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000427465	ENST00000438798		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-3CDS	ENST00000465201	ENST00000446828		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-3CDS	ENST00000465201	ENST00000424227		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-3CDS	ENST00000465201	ENST00000443863		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-3CDS	ENST00000465201	ENST00000535426		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-3CDS	ENST00000465201	ENST00000265026		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-intron	ENST00000465201	ENST00000448876		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-intron	ENST00000465201	ENST00000454237		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
intron-intron	ENST00000465201	ENST00000438798		TCGA	LD	UCS	TCGA-N8-A56S-01A	SENP2	chr3	185344181	+	MAP3K13	chr3	185181338	+
5CDS-intron	ENST00000606738	ENST00000401011		TCGA	LD	UCS	TCGA-N8-A56S-01A	TRABD2B	chr1	48459706	-	PDZK1P1	chr1	147476214	-
5UTR-intron	ENST00000435576	ENST00000401011		TCGA	LD	UCS	TCGA-N8-A56S-01A	TRABD2B	chr1	48459706	-	PDZK1P1	chr1	147476214	-
5UTR-5UTR	ENST00000262291	ENST00000262293		TCGA	LD	UCS	TCGA-N8-A56S-01A	VMP1	chr17	57785109	+	PRR11	chr17	57247109	+
5UTR-5UTR	ENST00000537567	ENST00000262293		TCGA	LD	UCS	TCGA-N8-A56S-01A	VMP1	chr17	57785109	+	PRR11	chr17	57247109	+
5UTR-5UTR	ENST00000539763	ENST00000262293		TCGA	LD	UCS	TCGA-N8-A56S-01A	VMP1	chr17	57785109	+	PRR11	chr17	57247109	+
5UTR-5UTR	ENST00000536180	ENST00000262293		TCGA	LD	UCS	TCGA-N8-A56S-01A	VMP1	chr17	57785109	+	PRR11	chr17	57247109	+
5UTR-5UTR	ENST00000545362	ENST00000262293		TCGA	LD	UCS	TCGA-N8-A56S-01A	VMP1	chr17	57785109	+	PRR11	chr17	57247109	+
intron-5UTR	ENST00000588617	ENST00000262293		TCGA	LD	UCS	TCGA-N8-A56S-01A	VMP1	chr17	57785109	+	PRR11	chr17	57247109	+
Frame-shit	ENST00000369905	ENST00000331493		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
Frame-shit	ENST00000369905	ENST00000517484		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5CDS-intron	ENST00000369905	ENST00000520802		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
intron-3CDS	ENST00000470322	ENST00000331493		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
intron-3CDS	ENST00000470322	ENST00000517484		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
intron-intron	ENST00000470322	ENST00000520802		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
Frame-shit	ENST00000487599	ENST00000331493		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
Frame-shit	ENST00000487599	ENST00000517484		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5CDS-intron	ENST00000487599	ENST00000520802		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5UTR-3CDS	ENST00000545684	ENST00000331493		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5UTR-3CDS	ENST00000545684	ENST00000517484		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5UTR-intron	ENST00000545684	ENST00000520802		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5UTR-3CDS	ENST00000446605	ENST00000331493		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5UTR-3CDS	ENST00000446605	ENST00000517484		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
5UTR-intron	ENST00000446605	ENST00000520802		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ACTR1A	chr10	104262357	-	EFCAB13	chr17	45447803	+
Frame-shit	ENST00000375687	ENST00000300415		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
5CDS-intron	ENST00000375687	ENST00000262659		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
Frame-shit	ENST00000542461	ENST00000300415		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
5CDS-intron	ENST00000542461	ENST00000262659		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
Frame-shit	ENST00000375689	ENST00000300415		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
5CDS-intron	ENST00000375689	ENST00000262659		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
Frame-shit	ENST00000306058	ENST00000300415		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
5CDS-intron	ENST00000306058	ENST00000262659		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
3UTR-3CDS	ENST00000470145	ENST00000300415		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
3UTR-intron	ENST00000470145	ENST00000262659		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	ASXL1	chr20	30956926	+	CCM2L	chr20	30613659	+
5CDS-5UTR	ENST00000585892	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000585892	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000585892	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000585892	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000585892	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000314646	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000314646	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000314646	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000314646	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000314646	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000359692	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000359692	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000359692	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000359692	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000359692	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000389253	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000389253	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000389253	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000389253	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000389253	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000355667	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000355667	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000355667	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000355667	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000355667	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000408974	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000408974	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000408974	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000408974	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-intron	ENST00000408974	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
intron-5UTR	ENST00000591819	ENST00000307422		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
intron-5UTR	ENST00000591819	ENST00000253099		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
intron-5UTR	ENST00000591819	ENST00000590669		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
intron-intron	ENST00000591819	ENST00000393733		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
intron-intron	ENST00000591819	ENST00000588502		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	DNM2	chr19	10829079	+	MRPL4	chr19	10362822	+
5CDS-5UTR	ENST00000265755	ENST00000406581		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000265755	ENST00000223361		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000265755	ENST00000452185		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000265755	ENST00000481763		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000455841	ENST00000406581		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000455841	ENST00000223361		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000455841	ENST00000452185		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000455841	ENST00000481763		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000424337	ENST00000406581		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000424337	ENST00000223361		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000424337	ENST00000452185		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000424337	ENST00000481763		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000476977	ENST00000406581		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000476977	ENST00000223361		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000476977	ENST00000452185		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
5CDS-5UTR	ENST00000476977	ENST00000481763		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
3UTR-5UTR	ENST00000489094	ENST00000406581		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
3UTR-5UTR	ENST00000489094	ENST00000223361		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
3UTR-5UTR	ENST00000489094	ENST00000452185		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
3UTR-5UTR	ENST00000489094	ENST00000481763		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	GTF2IRD1	chr7	73960139	+	POLD2	chr7	44161708	-
In-frame	ENST00000249760	ENST00000415912		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000249760	ENST00000357071		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000249760	ENST00000374893		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000249760	ENST00000436918		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000249760	ENST00000264205		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
5CDS-intron	ENST00000249760	ENST00000528294		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
intron-3CDS	ENST00000490194	ENST00000415912		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
intron-3CDS	ENST00000490194	ENST00000357071		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
intron-3CDS	ENST00000490194	ENST00000374893		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
intron-3CDS	ENST00000490194	ENST00000436918		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
intron-3CDS	ENST00000490194	ENST00000264205		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
intron-intron	ENST00000490194	ENST00000528294		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000487418	ENST00000415912		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000487418	ENST00000357071		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000487418	ENST00000374893		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000487418	ENST00000436918		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000487418	ENST00000264205		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
5CDS-intron	ENST00000487418	ENST00000528294		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000479013	ENST00000415912		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000479013	ENST00000357071		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000479013	ENST00000374893		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000479013	ENST00000436918		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
In-frame	ENST00000479013	ENST00000264205		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
5CDS-intron	ENST00000479013	ENST00000528294		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	IVD	chr15	40705286	+	ECE1	chr1	21586885	-
5CDS-intron	ENST00000406961	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000406961	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000406961	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
intron-intron	ENST00000469850	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
intron-intron	ENST00000469850	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
intron-3UTR	ENST00000469850	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000405141	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000405141	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000405141	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000407230	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000407230	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000407230	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000538539	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000538539	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000538539	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000288599	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000288599	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000288599	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000348332	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000348332	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000348332	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000395856	ENST00000407625		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-intron	ENST00000395856	ENST00000420135		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
5CDS-3UTR	ENST00000395856	ENST00000461972		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	NCOA1	chr2	24920667	+	FAM228B	chr2	24318011	+
Frame-shit	ENST00000254260	ENST00000255681		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	RHPN2	chr19	33517410	-	MACROD1	chr11	63919865	-
5CDS-5UTR	ENST00000254260	ENST00000538595		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	RHPN2	chr19	33517410	-	MACROD1	chr11	63919865	-
5UTR-3CDS	ENST00000400226	ENST00000255681		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	RHPN2	chr19	33517410	-	MACROD1	chr11	63919865	-
5UTR-5UTR	ENST00000400226	ENST00000538595		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	RHPN2	chr19	33517410	-	MACROD1	chr11	63919865	-
intron-3CDS	ENST00000588683	ENST00000255681		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	RHPN2	chr19	33517410	-	MACROD1	chr11	63919865	-
intron-5UTR	ENST00000588683	ENST00000538595		TCGA	LD	UCS	TCGA-N9-A4PZ-01A	RHPN2	chr19	33517410	-	MACROD1	chr11	63919865	-
intron-3CDS	ENST00000279146	ENST00000280606		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	AIP	chr11	67251325	+	PRSS53	chr16	31095129	-
5CDS-3UTR	ENST00000348367	ENST00000359906		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	GPAM	chr10	113941441	-	SERHL	chr22	42897631	+
5CDS-3UTR	ENST00000423155	ENST00000359906		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	GPAM	chr10	113941441	-	SERHL	chr22	42897631	+
5CDS-3UTR	ENST00000369425	ENST00000359906		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	GPAM	chr10	113941441	-	SERHL	chr22	42897631	+
5UTR-3UTR	ENST00000480130	ENST00000359906		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	GPAM	chr10	113941441	-	SERHL	chr22	42897631	+
5CDS-5UTR	ENST00000265062	ENST00000543273		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	RAB7A	chr3	128516912	+	GATS	chr7	99831297	-
5CDS-5UTR	ENST00000265062	ENST00000436886		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	RAB7A	chr3	128516912	+	GATS	chr7	99831297	-
5CDS-5UTR	ENST00000482525	ENST00000543273		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	RAB7A	chr3	128516912	+	GATS	chr7	99831297	-
5CDS-5UTR	ENST00000482525	ENST00000436886		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	RAB7A	chr3	128516912	+	GATS	chr7	99831297	-
5CDS-5UTR	ENST00000485280	ENST00000543273		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	RAB7A	chr3	128516912	+	GATS	chr7	99831297	-
5CDS-5UTR	ENST00000485280	ENST00000436886		TCGA	LD	UCS	TCGA-N9-A4Q1-01A	RAB7A	chr3	128516912	+	GATS	chr7	99831297	-
5CDS-5UTR	ENST00000593829	ENST00000398958		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000593829	ENST00000373833		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000593829	ENST00000373832		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000593829	ENST00000373831		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-intron	ENST00000593829	ENST00000429051		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000252816	ENST00000398958		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000252816	ENST00000373833		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000252816	ENST00000373832		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-5UTR	ENST00000252816	ENST00000373831		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
5CDS-intron	ENST00000252816	ENST00000429051		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	LSM4	chr19	18433828	-	RCC1	chr1	28856370	+
Frame-shit	ENST00000304239	ENST00000340308		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
Frame-shit	ENST00000304239	ENST00000447932		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
Frame-shit	ENST00000304239	ENST00000326232		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
5CDS-intron	ENST00000304239	ENST00000429996		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
5CDS-intron	ENST00000304239	ENST00000461089		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
Frame-shit	ENST00000337995	ENST00000340308		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
Frame-shit	ENST00000337995	ENST00000447932		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
Frame-shit	ENST00000337995	ENST00000326232		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
5CDS-intron	ENST00000337995	ENST00000429996		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
5CDS-intron	ENST00000337995	ENST00000461089		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
intron-3CDS	ENST00000586540	ENST00000340308		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
intron-3CDS	ENST00000586540	ENST00000447932		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
intron-3CDS	ENST00000586540	ENST00000326232		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
intron-intron	ENST00000586540	ENST00000429996		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
intron-intron	ENST00000586540	ENST00000461089		TCGA	LD	UCS	TCGA-N9-A4Q3-01A	ZNF420	chr19	37582023	+	SLC37A3	chr7	140035304	-
Frame-shit	ENST00000371712	ENST00000371649		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	INPP5E	chr9	139327408	-	EDF1	chr9	139758323	-
Frame-shit	ENST00000371712	ENST00000224073		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	INPP5E	chr9	139327408	-	EDF1	chr9	139758323	-
Frame-shit	ENST00000371712	ENST00000371648		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	INPP5E	chr9	139327408	-	EDF1	chr9	139758323	-
Frame-shit	ENST00000255681	ENST00000300026		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MACROD1	chr11	63918711	-	PPIB	chr15	64454353	-
5CDS-intron	ENST00000255681	ENST00000558492		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MACROD1	chr11	63918711	-	PPIB	chr15	64454353	-
5UTR-3CDS	ENST00000538595	ENST00000300026		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MACROD1	chr11	63918711	-	PPIB	chr15	64454353	-
5UTR-intron	ENST00000538595	ENST00000558492		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MACROD1	chr11	63918711	-	PPIB	chr15	64454353	-
intron-intron	ENST00000543482	ENST00000535829		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000543482	ENST00000357529		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000543482	ENST00000299673		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000543482	ENST00000538135		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000331706	ENST00000535829		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000331706	ENST00000357529		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000331706	ENST00000299673		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000331706	ENST00000538135		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000451018	ENST00000535829		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000451018	ENST00000357529		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000451018	ENST00000299673		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000451018	ENST00000538135		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000357742	ENST00000535829		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000357742	ENST00000357529		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000357742	ENST00000299673		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000357742	ENST00000538135		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000557742	ENST00000535829		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000557742	ENST00000357529		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000557742	ENST00000299673		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
5CDS-intron	ENST00000557742	ENST00000538135		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000449432	ENST00000535829		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000449432	ENST00000357529		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000449432	ENST00000299673		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-intron	ENST00000449432	ENST00000538135		TCGA	LD	UCS	TCGA-N9-A4Q4-01A	MCTP2	chr15	94945248	+	RIMKLB	chr12	8935508	+
intron-5UTR	ENST00000408388	ENST00000435819		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000309881		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000534394		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000441109		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000394788		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000447544		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000432207		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000544133		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000538969		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
intron-intron	ENST00000408388	ENST00000433696		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	PVT1	chr8	128903244	+	CD36	chr7	80175507	+
5UTR-3CDS	ENST00000359511	ENST00000368324		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	SLC25A44	chr1	156164038	+	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000359511	ENST00000539162		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	SLC25A44	chr1	156164038	+	SYT11	chr1	155850291	+
5UTR-3CDS	ENST00000423538	ENST00000368324		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	SLC25A44	chr1	156164038	+	SYT11	chr1	155850291	+
5UTR-5UTR	ENST00000423538	ENST00000539162		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	SLC25A44	chr1	156164038	+	SYT11	chr1	155850291	+
intron-3CDS	ENST00000469537	ENST00000368324		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	SLC25A44	chr1	156164038	+	SYT11	chr1	155850291	+
intron-5UTR	ENST00000469537	ENST00000539162		TCGA	LD	UCS	TCGA-N9-A4Q7-01A	SLC25A44	chr1	156164038	+	SYT11	chr1	155850291	+
5UTR-3CDS	ENST00000519824	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519824	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519824	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000522746	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000522746	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000522746	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000523509	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000523509	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000523509	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000401979	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000401979	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000401979	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519110	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519110	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519110	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
intron-3CDS	ENST00000522250	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
intron-3CDS	ENST00000522250	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
intron-3CDS	ENST00000522250	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000517654	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000517654	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000517654	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519540	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519540	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000519540	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000522941	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000522941	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000522941	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000518879	ENST00000269886		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000518879	ENST00000598564		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5UTR-3CDS	ENST00000518879	ENST00000417295		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	FAM49B	chr8	130915558	-	SH3GL1	chr19	4364117	-
5CDS-5UTR	ENST00000558518	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000558518	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000558518	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000557933	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000557933	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000557933	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000455727	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000455727	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000455727	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000535915	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000535915	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000535915	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000545707	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000545707	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000545707	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000558013	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000558013	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
5CDS-5UTR	ENST00000558013	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
intron-5UTR	ENST00000560628	ENST00000301455		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
intron-5UTR	ENST00000560628	ENST00000541807		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
intron-5UTR	ENST00000560628	ENST00000393962		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	LDLR	chr19	11200291	+	ANGPTL4	chr19	8429090	+
intron-intron	ENST00000313349	ENST00000337565		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
intron-intron	ENST00000313349	ENST00000393253		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
intron-intron	ENST00000313349	ENST00000357757		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
intron-intron	ENST00000313349	ENST00000308659		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
intron-intron	ENST00000313349	ENST00000393256		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
intron-intron	ENST00000313349	ENST00000405953		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5UTR-intron	ENST00000476805	ENST00000337565		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5UTR-intron	ENST00000476805	ENST00000393253		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5UTR-intron	ENST00000476805	ENST00000357757		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5UTR-intron	ENST00000476805	ENST00000308659		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5UTR-intron	ENST00000476805	ENST00000393256		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5UTR-intron	ENST00000476805	ENST00000405953		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	SERTAD2	chr2	64977415	-	BCL2L11	chr2	111921710	+
5CDS-5UTR	ENST00000264335	ENST00000305513		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	YWHAE	chr17	1303341	-	SMYD4	chr17	1731300	-
5UTR-5UTR	ENST00000571732	ENST00000305513		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	YWHAE	chr17	1303341	-	SMYD4	chr17	1731300	-
5CDS-5UTR	ENST00000573026	ENST00000305513		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	YWHAE	chr17	1303341	-	SMYD4	chr17	1731300	-
5CDS-5UTR	ENST00000575977	ENST00000305513		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	YWHAE	chr17	1303341	-	SMYD4	chr17	1731300	-
5UTR-5UTR	ENST00000498643	ENST00000305513		TCGA	LD	UCS	TCGA-N9-A4Q8-01A	YWHAE	chr17	1303341	-	SMYD4	chr17	1731300	-
In-frame	ENST00000297268	ENST00000295633		TCGA	LD	UCS	TCGA-NA-A4QV-01A	COL1A2	chr7	94054975	+	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000297268	ENST00000424703		TCGA	LD	UCS	TCGA-NA-A4QV-01A	COL1A2	chr7	94054975	+	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000297268	ENST00000485968		TCGA	LD	UCS	TCGA-NA-A4QV-01A	COL1A2	chr7	94054975	+	FSTL1	chr3	120134874	-
5CDS-intron	ENST00000281382	ENST00000464527		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000281382	ENST00000445927		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000281382	ENST00000294947		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000306465	ENST00000464527		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000306465	ENST00000445927		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000306465	ENST00000294947		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000495933	ENST00000464527		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000495933	ENST00000445927		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000495933	ENST00000294947		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	C2orf61	chr2	47397903	-
5CDS-intron	ENST00000281382	ENST00000272298		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-intron	ENST00000281382	ENST00000409563		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-5UTR	ENST00000281382	ENST00000484408		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-intron	ENST00000306465	ENST00000272298		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-intron	ENST00000306465	ENST00000409563		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-5UTR	ENST00000306465	ENST00000484408		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-intron	ENST00000495933	ENST00000272298		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-intron	ENST00000495933	ENST00000409563		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
5CDS-5UTR	ENST00000495933	ENST00000484408		TCGA	LD	UCS	TCGA-NA-A4QV-01A	PIGF	chr2	46839367	-	CALM2	chr2	47399598	-
Frame-shit	ENST00000321773	ENST00000574322		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000321773	ENST00000573600		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000321773	ENST00000318988		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000321773	ENST00000572043		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000409012	ENST00000574322		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000409012	ENST00000573600		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000409012	ENST00000318988		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
Frame-shit	ENST00000409012	ENST00000572043		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
intron-3CDS	ENST00000541945	ENST00000574322		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
intron-3CDS	ENST00000541945	ENST00000573600		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
intron-3CDS	ENST00000541945	ENST00000318988		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
intron-3CDS	ENST00000541945	ENST00000572043		TCGA	LD	UCS	TCGA-NA-A4QV-01A	TPRN	chr9	140093439	-	CTDNEP1	chr17	7147954	-
5UTR-3CDS	ENST00000586458	ENST00000355481		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
5UTR-3CDS	ENST00000586458	ENST00000360985		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
5UTR-3CDS	ENST00000586458	ENST00000359596		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
intron-3CDS	ENST00000334116	ENST00000355481		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
intron-3CDS	ENST00000334116	ENST00000360985		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
intron-3CDS	ENST00000334116	ENST00000359596		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
intron-3CDS	ENST00000591340	ENST00000355481		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
intron-3CDS	ENST00000591340	ENST00000360985		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
intron-3CDS	ENST00000591340	ENST00000359596		TCGA	LD	UCS	TCGA-NA-A4QV-01A	ZNF529	chr19	37080517	-	RYR1	chr19	39051753	+
Frame-shit	ENST00000295903	ENST00000295902		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000295903	ENST00000564377		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000498707	ENST00000295902		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
Frame-shit	ENST00000498707	ENST00000564377		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000467257	ENST00000295902		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000467257	ENST00000564377		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000459780	ENST00000295902		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
intron-3CDS	ENST00000459780	ENST00000564377		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ADAMTS9	chr3	64617131	-	PRICKLE2	chr3	64085601	-
5CDS-intron	ENST00000344450	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-intron	ENST00000344450	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-5UTR	ENST00000344450	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-intron	ENST00000344450	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000603453	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000603453	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-5UTR	ENST00000603453	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000603453	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000605315	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000605315	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-5UTR	ENST00000605315	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000605315	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-intron	ENST00000419235	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-intron	ENST00000419235	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-5UTR	ENST00000419235	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5CDS-intron	ENST00000419235	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5UTR-intron	ENST00000605035	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5UTR-intron	ENST00000605035	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5UTR-5UTR	ENST00000605035	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
5UTR-intron	ENST00000605035	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000605863	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000605863	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-5UTR	ENST00000605863	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000605863	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000603290	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000603290	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-5UTR	ENST00000603290	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000603290	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000604971	ENST00000398682		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000604971	ENST00000569420		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-5UTR	ENST00000604971	ENST00000568854		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-intron	ENST00000604971	ENST00000398680		TCGA	LD	UCS	TCGA-NA-A4QW-01A	DUSP22	chr6	311962	+	TP53TG3	chr16	32686386	-
intron-3UTR	ENST00000363315	ENST00000491145		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000363315	ENST00000395720		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000363315	ENST00000357698		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000363315	ENST00000380230		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000363315	ENST00000496660		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000363315	ENST00000319580		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000363315	ENST00000395723		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000491145		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000395720		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000357698		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000380230		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000496660		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000319580		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
intron-3UTR	ENST00000364968	ENST00000395723		TCGA	LD	UCS	TCGA-NA-A4QW-01A	SNHG16	chr17	74555125	+	ANKDD1A	chr15	65218265	+
5CDS-5UTR	ENST00000407775	ENST00000445937		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000407775	ENST00000531443		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000407775	ENST00000517566		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-5UTR	ENST00000407775	ENST00000452423		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000442977		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000521963		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000312046		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000449762		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000297447		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000521592		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5CDS-intron	ENST00000407775	ENST00000497705		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000520492	ENST00000445937		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000520492	ENST00000531443		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000520492	ENST00000517566		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-5UTR	ENST00000520492	ENST00000452423		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000442977		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000521963		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000312046		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000449762		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000297447		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000521592		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
5UTR-intron	ENST00000520492	ENST00000497705		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000517361	ENST00000445937		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000517361	ENST00000531443		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000517361	ENST00000517566		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000517361	ENST00000452423		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000442977		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000521963		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000312046		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000449762		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000297447		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000521592		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000517361	ENST00000497705		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000522296	ENST00000445937		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000522296	ENST00000531443		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000522296	ENST00000517566		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000522296	ENST00000452423		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000442977		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000521963		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000312046		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000449762		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000297447		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000521592		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000522296	ENST00000497705		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000378472	ENST00000445937		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000378472	ENST00000531443		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000378472	ENST00000517566		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-5UTR	ENST00000378472	ENST00000452423		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000442977		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000521963		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000312046		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000449762		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000297447		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000521592		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-intron	ENST00000378472	ENST00000497705		TCGA	LD	UCS	TCGA-NA-A4QW-01A	ZFPM2	chr8	106456609	+	OXR1	chr8	107371704	+
intron-3CDS	ENST00000390658	ENST00000444215		TCGA	LD	UCS	TCGA-NA-A4QX-01A	EID2	chr19	40030642	-	TDRD12	chr19	33222631	+
intron-3CDS	ENST00000390658	ENST00000421545		TCGA	LD	UCS	TCGA-NA-A4QX-01A	EID2	chr19	40030642	-	TDRD12	chr19	33222631	+
Frame-shit	ENST00000434377	ENST00000311921		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000434377	ENST00000544431		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000434377	ENST00000355898		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000454319	ENST00000311921		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000454319	ENST00000544431		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000454319	ENST00000355898		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
intron-3CDS	ENST00000493391	ENST00000311921		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
intron-3CDS	ENST00000493391	ENST00000544431		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
intron-3CDS	ENST00000493391	ENST00000355898		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000392170	ENST00000311921		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000392170	ENST00000544431		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000392170	ENST00000355898		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000424129	ENST00000311921		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000424129	ENST00000544431		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
Frame-shit	ENST00000424129	ENST00000355898		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
intron-3CDS	ENST00000472909	ENST00000311921		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
intron-3CDS	ENST00000472909	ENST00000544431		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
intron-3CDS	ENST00000472909	ENST00000355898		TCGA	LD	UCS	TCGA-NA-A4QX-01A	ZNF566	chr19	36963813	-	ZNF507	chr19	32851410	+
5UTR-3CDS	ENST00000426256	ENST00000422806		TCGA	LD	UCS	TCGA-NA-A4QY-01A	RNF185	chr22	31556289	+	NKX1-1	chr4	1397603	-
5UTR-3CDS	ENST00000326132	ENST00000422806		TCGA	LD	UCS	TCGA-NA-A4QY-01A	RNF185	chr22	31556289	+	NKX1-1	chr4	1397603	-
5UTR-3CDS	ENST00000266252	ENST00000422806		TCGA	LD	UCS	TCGA-NA-A4QY-01A	RNF185	chr22	31556289	+	NKX1-1	chr4	1397603	-
5UTR-3CDS	ENST00000483233	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000483233	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000483233	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000315877	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000315877	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000315877	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000487005	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000487005	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000487005	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000395008	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000395008	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000395008	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000361143	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000361143	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000361143	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000461108	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000461108	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000461108	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-3CDS	ENST00000525795	ENST00000296484		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000525795	ENST00000394970		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
5UTR-intron	ENST00000525795	ENST00000474012		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ABHD14B	chr3	52007981	-	POC1A	chr3	52130728	-
Frame-shit	ENST00000378785	ENST00000378372		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ATAD3C	chr1	1394611	+	HSPA14	chr10	14909082	+
5CDS-intron	ENST00000378785	ENST00000493863		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ATAD3C	chr1	1394611	+	HSPA14	chr10	14909082	+
5CDS-intron	ENST00000378785	ENST00000437161		TCGA	LD	UCS	TCGA-NA-A4R0-01A	ATAD3C	chr1	1394611	+	HSPA14	chr10	14909082	+
5UTR-intron	ENST00000378609	ENST00000341832		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000378609	ENST00000340677		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000378609	ENST00000407249		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000378609	ENST00000317673		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000472614	ENST00000341832		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000472614	ENST00000340677		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000472614	ENST00000407249		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
5UTR-intron	ENST00000472614	ENST00000317673		TCGA	LD	UCS	TCGA-NA-A4R0-01A	GNB1	chr1	1822259	-	CDK11B	chr1	1588948	-
In-frame	ENST00000450793	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000450793	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000450793	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000450793	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000538141	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000538141	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000538141	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000538141	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000380180	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000380180	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000380180	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000380180	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000318007	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000318007	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000318007	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000318007	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000437932	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000437932	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000437932	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000437932	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000317968	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000317968	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000317968	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000317968	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5UTR-3CDS	ENST00000542407	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5UTR-3CDS	ENST00000542407	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5UTR-intron	ENST00000542407	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5UTR-intron	ENST00000542407	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000508216	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000508216	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000508216	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000508216	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000514743	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000514743	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000514743	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000514743	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
intron-3CDS	ENST00000380176	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
intron-3CDS	ENST00000380176	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
intron-intron	ENST00000380176	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
intron-intron	ENST00000380176	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000359265	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000359265	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000359265	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000359265	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
Frame-shit	ENST00000512274	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
Frame-shit	ENST00000512274	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000512274	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000512274	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000504489	ENST00000509176		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000504489	ENST00000333691		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000504489	ENST00000432775		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
5CDS-intron	ENST00000504489	ENST00000504150		TCGA	LD	UCS	TCGA-NA-A4R0-01A	PDLIM5	chr4	95376535	+	CCSER1	chr4	92519723	+
In-frame	ENST00000262544	ENST00000357236		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000262544	ENST00000329494		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000262544	ENST00000262547		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000262544	ENST00000487128		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000262544	ENST00000358866		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000336714	ENST00000357236		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000336714	ENST00000329494		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000336714	ENST00000262547		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000336714	ENST00000487128		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000336714	ENST00000358866		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000377475	ENST00000357236		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000377475	ENST00000329494		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000377475	ENST00000262547		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000377475	ENST00000487128		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000377475	ENST00000358866		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000377465	ENST00000357236		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000377465	ENST00000329494		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
In-frame	ENST00000377465	ENST00000262547		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000377465	ENST00000487128		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000377465	ENST00000358866		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
intron-3CDS	ENST00000494645	ENST00000357236		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
intron-3CDS	ENST00000494645	ENST00000329494		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
intron-3CDS	ENST00000494645	ENST00000262547		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
intron-5UTR	ENST00000494645	ENST00000487128		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
intron-5UTR	ENST00000494645	ENST00000358866		TCGA	LD	UCS	TCGA-NA-A4R0-01A	SEC23B	chr20	18523816	+	DZANK1	chr20	18414409	-
5CDS-5UTR	ENST00000368194	ENST00000454449		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ARHGEF11	chr1	157014091	-	ETV3L	chr1	157069348	-
intron-5UTR	ENST00000487682	ENST00000454449		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ARHGEF11	chr1	157014091	-	ETV3L	chr1	157069348	-
5CDS-5UTR	ENST00000361409	ENST00000454449		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ARHGEF11	chr1	157014091	-	ETV3L	chr1	157069348	-
intron-5UTR	ENST00000315174	ENST00000454449		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ARHGEF11	chr1	157014091	-	ETV3L	chr1	157069348	-
intron-3CDS	ENST00000379312	ENST00000336517		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000379312	ENST00000394857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-5UTR	ENST00000379312	ENST00000416245		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-intron	ENST00000379312	ENST00000467555		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000566522	ENST00000336517		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000566522	ENST00000394857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-5UTR	ENST00000566522	ENST00000416245		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-intron	ENST00000566522	ENST00000467555		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000042381	ENST00000336517		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000042381	ENST00000394857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-5UTR	ENST00000042381	ENST00000416245		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-intron	ENST00000042381	ENST00000467555		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000540839	ENST00000336517		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000540839	ENST00000394857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-5UTR	ENST00000540839	ENST00000416245		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-intron	ENST00000540839	ENST00000467555		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000422602	ENST00000336517		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000422602	ENST00000394857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-5UTR	ENST00000422602	ENST00000416245		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-intron	ENST00000422602	ENST00000467555		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000428437	ENST00000336517		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-3CDS	ENST00000428437	ENST00000394857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-5UTR	ENST00000428437	ENST00000416245		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
intron-intron	ENST00000428437	ENST00000467555		TCGA	LD	UCS	TCGA-NA-A4R1-01A	FAM65A	chr16	67578054	+	ZP3	chr7	76062301	+
In-frame	ENST00000242365	ENST00000379007		TCGA	LD	UCS	TCGA-NA-A4R1-01A	KIAA1549	chr7	138545885	-	C7orf66	chr7	108524641	-
In-frame	ENST00000440172	ENST00000379007		TCGA	LD	UCS	TCGA-NA-A4R1-01A	KIAA1549	chr7	138545885	-	C7orf66	chr7	108524641	-
In-frame	ENST00000422774	ENST00000379007		TCGA	LD	UCS	TCGA-NA-A4R1-01A	KIAA1549	chr7	138545885	-	C7orf66	chr7	108524641	-
5CDS-intron	ENST00000216259	ENST00000457093		TCGA	LD	UCS	TCGA-NA-A4R1-01A	PMM1	chr22	41979963	-	SHISA8	chr22	42306151	-
intron-intron	ENST00000466645	ENST00000457093		TCGA	LD	UCS	TCGA-NA-A4R1-01A	PMM1	chr22	41979963	-	SHISA8	chr22	42306151	-
Frame-shit	ENST00000373302	ENST00000424082		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373302	ENST00000259351		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373302	ENST00000394022		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373302	ENST00000373436		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373302	ENST00000373434		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000373302	ENST00000394011		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000373302	ENST00000480993		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373299	ENST00000424082		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373299	ENST00000259351		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373299	ENST00000394022		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373299	ENST00000373436		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000373299	ENST00000373434		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000373299	ENST00000394011		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
5CDS-intron	ENST00000373299	ENST00000480993		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000481942	ENST00000424082		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000481942	ENST00000259351		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000481942	ENST00000394022		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000481942	ENST00000373436		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-3CDS	ENST00000481942	ENST00000373434		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-intron	ENST00000481942	ENST00000394011		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
intron-intron	ENST00000481942	ENST00000480993		TCGA	LD	UCS	TCGA-NA-A4R1-01A	STXBP1	chr9	130423484	+	RALGPS1	chr9	129928348	+
Frame-shit	ENST00000420826	ENST00000293217		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000420826	ENST00000537812		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000420826	ENST00000301608		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000420826	ENST00000591857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
Frame-shit	ENST00000314523	ENST00000293217		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000314523	ENST00000537812		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000314523	ENST00000301608		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000314523	ENST00000591857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
intron-3CDS	ENST00000578238	ENST00000293217		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
intron-5UTR	ENST00000578238	ENST00000537812		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
intron-5UTR	ENST00000578238	ENST00000301608		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
intron-5UTR	ENST00000578238	ENST00000591857		TCGA	LD	UCS	TCGA-NA-A4R1-01A	SUMO2	chr17	73178909	-	ACOX1	chr17	73974774	-
5CDS-5UTR	ENST00000536359	ENST00000462691		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000536359	ENST00000370406		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000536359	ENST00000355203		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000536359	ENST00000370404		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000536359	ENST00000497550		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000316916	ENST00000462691		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000316916	ENST00000370406		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000316916	ENST00000355203		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000316916	ENST00000370404		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000316916	ENST00000497550		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000507237	ENST00000462691		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000507237	ENST00000370406		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000507237	ENST00000355203		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000507237	ENST00000370404		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5CDS-5UTR	ENST00000507237	ENST00000497550		TCGA	LD	UCS	TCGA-NA-A4R1-01A	TMEM185A	chrX	148713226	-	CXorf40B	chrX	149105698	-
5UTR-3CDS	ENST00000348579	ENST00000304372		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZDHHC1	chr16	67450074	-	KCTD19	chr16	67337240	-
5UTR-5UTR	ENST00000348579	ENST00000562860		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZDHHC1	chr16	67450074	-	KCTD19	chr16	67337240	-
intron-3CDS	ENST00000566075	ENST00000304372		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZDHHC1	chr16	67450074	-	KCTD19	chr16	67337240	-
intron-5UTR	ENST00000566075	ENST00000562860		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZDHHC1	chr16	67450074	-	KCTD19	chr16	67337240	-
5UTR-5UTR	ENST00000396421	ENST00000339223		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZNF813	chr19	53971043	+	FPR3	chr19	52326992	+
5UTR-5UTR	ENST00000396421	ENST00000595991		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZNF813	chr19	53971043	+	FPR3	chr19	52326992	+
5UTR-5UTR	ENST00000396403	ENST00000339223		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZNF813	chr19	53971043	+	FPR3	chr19	52326992	+
5UTR-5UTR	ENST00000396403	ENST00000595991		TCGA	LD	UCS	TCGA-NA-A4R1-01A	ZNF813	chr19	53971043	+	FPR3	chr19	52326992	+
5UTR-5UTR	ENST00000264010	ENST00000291041		TCGA	LD	UCS	TCGA-NA-A5I1-01A	CTCF	chr16	67605167	+	PSKH1	chr16	67942583	+
5UTR-intron	ENST00000264010	ENST00000575198		TCGA	LD	UCS	TCGA-NA-A5I1-01A	CTCF	chr16	67605167	+	PSKH1	chr16	67942583	+
5UTR-5UTR	ENST00000401394	ENST00000291041		TCGA	LD	UCS	TCGA-NA-A5I1-01A	CTCF	chr16	67605167	+	PSKH1	chr16	67942583	+
5UTR-intron	ENST00000401394	ENST00000575198		TCGA	LD	UCS	TCGA-NA-A5I1-01A	CTCF	chr16	67605167	+	PSKH1	chr16	67942583	+
3UTR-3CDS	ENST00000525037	ENST00000529193		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
3UTR-3CDS	ENST00000525037	ENST00000288400		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
3UTR-3UTR	ENST00000525037	ENST00000534616		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
In-frame	ENST00000530173	ENST00000529193		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
In-frame	ENST00000530173	ENST00000288400		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
5CDS-3UTR	ENST00000530173	ENST00000534616		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
In-frame	ENST00000322157	ENST00000529193		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
In-frame	ENST00000322157	ENST00000288400		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
5CDS-3UTR	ENST00000322157	ENST00000534616		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
In-frame	ENST00000544660	ENST00000529193		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
In-frame	ENST00000544660	ENST00000288400		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
5CDS-3UTR	ENST00000544660	ENST00000534616		TCGA	LD	UCS	TCGA-NA-A5I1-01A	NPEPPS	chr17	45623359	+	CREB3L1	chr11	46341815	+
intron-3CDS	ENST00000392750	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-intron	ENST00000392750	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3UTR	ENST00000392750	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3CDS	ENST00000473645	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-intron	ENST00000473645	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3UTR	ENST00000473645	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3CDS	ENST00000497056	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-intron	ENST00000497056	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3UTR	ENST00000497056	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3CDS	ENST00000492396	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-intron	ENST00000492396	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3UTR	ENST00000492396	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3CDS	ENST00000461494	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-intron	ENST00000461494	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3UTR	ENST00000461494	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3CDS	ENST00000470131	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-intron	ENST00000470131	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3UTR	ENST00000470131	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3CDS	ENST00000487947	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-intron	ENST00000487947	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3UTR	ENST00000487947	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3CDS	ENST00000471885	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-intron	ENST00000471885	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
5UTR-3UTR	ENST00000471885	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3CDS	ENST00000487678	ENST00000528838		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-intron	ENST00000487678	ENST00000400780		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3UTR	ENST00000487678	ENST00000528842		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PDCD10	chr3	167452594	-	HSF1	chr8	145537509	+
intron-3UTR	ENST00000291825	ENST00000381395		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000291825	ENST00000381406		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000291825	ENST00000416167		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000291825	ENST00000300632		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000291825	ENST00000434045		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000291825	ENST00000381392		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000291825	ENST00000381389		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000291825	ENST00000418738		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000324001	ENST00000381395		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000324001	ENST00000381406		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000324001	ENST00000416167		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000324001	ENST00000300632		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000324001	ENST00000434045		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000324001	ENST00000381392		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000324001	ENST00000381389		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000324001	ENST00000418738		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000599513	ENST00000381395		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000599513	ENST00000381406		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000599513	ENST00000416167		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-3UTR	ENST00000599513	ENST00000300632		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000599513	ENST00000434045		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000599513	ENST00000381392		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000599513	ENST00000381389		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
intron-intron	ENST00000599513	ENST00000418738		TCGA	LD	UCS	TCGA-NA-A5I1-01A	PRX	chr19	40903240	-	IGF2	chr11	2150724	-
Frame-shit	ENST00000508628	ENST00000330261		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000508628	ENST00000573182		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000508628	ENST00000570394		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-3CDS	ENST00000456466	ENST00000330261		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-intron	ENST00000456466	ENST00000573182		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-intron	ENST00000456466	ENST00000570394		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
Frame-shit	ENST00000582970	ENST00000330261		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000582970	ENST00000573182		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000582970	ENST00000570394		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-3CDS	ENST00000319921	ENST00000330261		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-intron	ENST00000319921	ENST00000573182		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-intron	ENST00000319921	ENST00000570394		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
Frame-shit	ENST00000336301	ENST00000330261		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000336301	ENST00000573182		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
5CDS-intron	ENST00000336301	ENST00000570394		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-3CDS	ENST00000427003	ENST00000330261		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-intron	ENST00000427003	ENST00000573182		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
intron-intron	ENST00000427003	ENST00000570394		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78314156	+	PPP1R27	chr17	79792709	-
Frame-shit	ENST00000508628	ENST00000511216		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000508628	ENST00000389851		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000508628	ENST00000507531		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000508628	ENST00000511563		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000508628	ENST00000512728		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000508628	ENST00000507422		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000456466	ENST00000511216		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000456466	ENST00000389851		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000456466	ENST00000507531		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000456466	ENST00000511563		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000456466	ENST00000512728		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000456466	ENST00000507422		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000582970	ENST00000511216		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000582970	ENST00000389851		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
Frame-shit	ENST00000582970	ENST00000507531		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000582970	ENST00000511563		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000582970	ENST00000512728		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5CDS-intron	ENST00000582970	ENST00000507422		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000319921	ENST00000511216		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000319921	ENST00000389851		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000319921	ENST00000507531		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000319921	ENST00000511563		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000319921	ENST00000512728		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000319921	ENST00000507422		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000336301	ENST00000511216		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000336301	ENST00000389851		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000336301	ENST00000507531		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000336301	ENST00000511563		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000336301	ENST00000512728		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000336301	ENST00000507422		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000427003	ENST00000511216		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000427003	ENST00000389851		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-3CDS	ENST00000427003	ENST00000507531		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000427003	ENST00000511563		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000427003	ENST00000512728		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
intron-intron	ENST00000427003	ENST00000507422		TCGA	LD	UCS	TCGA-NA-A5I1-01A	RNF213	chr17	78308070	+	UVSSA	chr4	1345503	+
5UTR-3CDS	ENST00000336648	ENST00000290299		TCGA	LD	UCS	TCGA-ND-A4W6-01A	HLCS	chr21	38334336	-	ATP5O	chr21	35288281	-
5UTR-intron	ENST00000336648	ENST00000496044		TCGA	LD	UCS	TCGA-ND-A4W6-01A	HLCS	chr21	38334336	-	ATP5O	chr21	35288281	-
5UTR-3CDS	ENST00000399120	ENST00000290299		TCGA	LD	UCS	TCGA-ND-A4W6-01A	HLCS	chr21	38334336	-	ATP5O	chr21	35288281	-
5UTR-intron	ENST00000399120	ENST00000496044		TCGA	LD	UCS	TCGA-ND-A4W6-01A	HLCS	chr21	38334336	-	ATP5O	chr21	35288281	-
intron-3CDS	ENST00000482273	ENST00000290299		TCGA	LD	UCS	TCGA-ND-A4W6-01A	HLCS	chr21	38334336	-	ATP5O	chr21	35288281	-
intron-intron	ENST00000482273	ENST00000496044		TCGA	LD	UCS	TCGA-ND-A4W6-01A	HLCS	chr21	38334336	-	ATP5O	chr21	35288281	-
5UTR-3CDS	ENST00000514342	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5UTR-3UTR	ENST00000514342	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
In-frame	ENST00000505697	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5CDS-3UTR	ENST00000505697	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
3UTR-3CDS	ENST00000511363	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
3UTR-3UTR	ENST00000511363	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
In-frame	ENST00000503750	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5CDS-3UTR	ENST00000503750	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
In-frame	ENST00000281631	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5CDS-3UTR	ENST00000281631	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
In-frame	ENST00000514067	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5CDS-3UTR	ENST00000514067	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
In-frame	ENST00000505554	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5CDS-3UTR	ENST00000505554	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
intron-3CDS	ENST00000513738	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
intron-3UTR	ENST00000513738	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
intron-3CDS	ENST00000503665	ENST00000389074		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
intron-3UTR	ENST00000503665	ENST00000512767		TCGA	LD	UCS	TCGA-ND-A4W6-01A	PARP8	chr5	50059076	+	FAM159B	chr5	63991334	+
5CDS-3UTR	ENST00000581396	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000581396	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000581396	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-3UTR	ENST00000379504	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000379504	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000379504	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-3UTR	ENST00000318094	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000318094	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000318094	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-3UTR	ENST00000395739	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000395739	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000395739	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-3UTR	ENST00000535933	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000535933	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000535933	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-3UTR	ENST00000540946	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000540946	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000540946	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-3UTR	ENST00000542206	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000542206	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-intron	ENST00000542206	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
intron-3UTR	ENST00000478943	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
intron-intron	ENST00000478943	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
intron-intron	ENST00000478943	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
intron-3UTR	ENST00000577517	ENST00000225614		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
intron-intron	ENST00000577517	ENST00000588479		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
intron-intron	ENST00000577517	ENST00000437911		TCGA	LD	UCS	TCGA-ND-A4W6-01A	TOM1L2	chr17	17875576	-	GALK1	chr17	73747818	-
5CDS-5UTR	ENST00000374550	ENST00000334351		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
5CDS-5UTR	ENST00000374550	ENST00000374468		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
5CDS-intron	ENST00000374550	ENST00000579103		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
5CDS-intron	ENST00000374550	ENST00000400776		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
3UTR-5UTR	ENST00000482370	ENST00000334351		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
3UTR-5UTR	ENST00000482370	ENST00000374468		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
3UTR-intron	ENST00000482370	ENST00000579103		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
3UTR-intron	ENST00000482370	ENST00000400776		TCGA	LD	UCS	TCGA-ND-A4WC-01A	RPL11	chr1	24020403	+	PNRC2	chr1	24287419	+
Frame-shit	ENST00000407627	ENST00000381061		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
Frame-shit	ENST00000407627	ENST00000252934		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000407627	ENST00000498009		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000407627	ENST00000402380		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
Frame-shit	ENST00000596459	ENST00000381061		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
Frame-shit	ENST00000596459	ENST00000252934		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000596459	ENST00000498009		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000596459	ENST00000402380		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
In-frame	ENST00000351593	ENST00000381061		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
In-frame	ENST00000351593	ENST00000252934		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000351593	ENST00000498009		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000351593	ENST00000402380		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
Frame-shit	ENST00000593807	ENST00000381061		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
Frame-shit	ENST00000593807	ENST00000252934		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000593807	ENST00000498009		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000593807	ENST00000402380		TCGA	LD	UCS	TCGA-ND-A4WF-01A	ELAVL1	chr19	8038609	-	ATXN10	chr22	46238871	+
5CDS-intron	ENST00000342628	ENST00000327087		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000342628	ENST00000546188		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000342628	ENST00000356134		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000342628	ENST00000538154		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000361953	ENST00000327087		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000361953	ENST00000546188		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000361953	ENST00000356134		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000361953	ENST00000538154		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000359843	ENST00000327087		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000359843	ENST00000546188		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000359843	ENST00000356134		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-intron	ENST00000359843	ENST00000538154		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
intron-intron	ENST00000537018	ENST00000327087		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
intron-intron	ENST00000537018	ENST00000546188		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
intron-intron	ENST00000537018	ENST00000356134		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
intron-intron	ENST00000537018	ENST00000538154		TCGA	LD	UCS	TCGA-ND-A4WF-01A	FOXM1	chr12	2973486	-	ANO2	chr12	5641280	-
5CDS-5UTR	ENST00000382199	ENST00000528780		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000382199	ENST00000328221		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000382199	ENST00000408968		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-intron	ENST00000382199	ENST00000525554		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-5UTR	ENST00000421047	ENST00000528780		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-5UTR	ENST00000421047	ENST00000328221		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-5UTR	ENST00000421047	ENST00000408968		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-intron	ENST00000421047	ENST00000525554		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000457616	ENST00000528780		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000457616	ENST00000328221		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000457616	ENST00000408968		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-intron	ENST00000457616	ENST00000525554		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000346192	ENST00000528780		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000346192	ENST00000328221		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-5UTR	ENST00000346192	ENST00000408968		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5CDS-intron	ENST00000346192	ENST00000525554		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-5UTR	ENST00000494906	ENST00000528780		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-5UTR	ENST00000494906	ENST00000328221		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-5UTR	ENST00000494906	ENST00000408968		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
intron-intron	ENST00000494906	ENST00000525554		TCGA	LD	UCS	TCGA-ND-A4WF-01A	IGF2BP2	chr3	185540941	-	IFITM1	chr11	314164	+
5UTR-3CDS	ENST00000504387	ENST00000176195		TCGA	LD	UCS	TCGA-ND-A4WF-01A	NEDD9	chr6	11382372	-	SCT	chr11	626989	-
intron-3CDS	ENST00000379446	ENST00000176195		TCGA	LD	UCS	TCGA-ND-A4WF-01A	NEDD9	chr6	11382372	-	SCT	chr11	626989	-
intron-3CDS	ENST00000379433	ENST00000176195		TCGA	LD	UCS	TCGA-ND-A4WF-01A	NEDD9	chr6	11382372	-	SCT	chr11	626989	-
5UTR-3CDS	ENST00000508800	ENST00000176195		TCGA	LD	UCS	TCGA-ND-A4WF-01A	NEDD9	chr6	11382372	-	SCT	chr11	626989	-
5CDS-intron	ENST00000535977	ENST00000472539		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000535977	ENST00000356815		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000539661	ENST00000472539		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000539661	ENST00000356815		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000538492	ENST00000472539		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000538492	ENST00000356815		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000248139	ENST00000472539		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-intron	ENST00000248139	ENST00000356815		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBM	chr16	214481	+
5CDS-5UTR	ENST00000535977	ENST00000252951		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBZ	chr16	202892	+
5CDS-5UTR	ENST00000539661	ENST00000252951		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBZ	chr16	202892	+
5CDS-5UTR	ENST00000538492	ENST00000252951		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBZ	chr16	202892	+
5CDS-5UTR	ENST00000248139	ENST00000252951		TCGA	LD	UCS	TCGA-ND-A4WF-01A	RAB40C	chr16	640433	+	HBZ	chr16	202892	+
In-frame	ENST00000606738	ENST00000532097		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
Frame-shit	ENST00000606738	ENST00000431206		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
In-frame	ENST00000606738	ENST00000352303		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
5CDS-intron	ENST00000606738	ENST00000532025		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
5UTR-3CDS	ENST00000435576	ENST00000532097		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
5UTR-3CDS	ENST00000435576	ENST00000431206		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
5UTR-3CDS	ENST00000435576	ENST00000352303		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
5UTR-intron	ENST00000435576	ENST00000532025		TCGA	LD	UCS	TCGA-ND-A4WF-01A	TRABD2B	chr1	48459706	-	PSMD13	chr11	244041	+
Frame-shit	ENST00000382565	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382565	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382565	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382565	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382578	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382578	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382578	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382578	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
3UTR-3CDS	ENST00000382566	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
3UTR-3CDS	ENST00000382566	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
3UTR-3CDS	ENST00000382566	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
3UTR-3CDS	ENST00000382566	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000348295	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000348295	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000348295	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000348295	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
In-frame	ENST00000544772	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
In-frame	ENST00000544772	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
In-frame	ENST00000544772	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
In-frame	ENST00000544772	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000404276	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000404276	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000404276	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000404276	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000328354	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000328354	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000328354	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000328354	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000405598	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000405598	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000405598	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000405598	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382580	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382580	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382580	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000382580	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000402731	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000402731	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000402731	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000402731	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000403642	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000403642	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000403642	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
Frame-shit	ENST00000403642	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
intron-3CDS	ENST00000464581	ENST00000490103		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
intron-3CDS	ENST00000464581	ENST00000397871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
intron-3CDS	ENST00000464581	ENST00000397872		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
intron-3CDS	ENST00000464581	ENST00000397873		TCGA	LD	UCS	TCGA-NF-A4WX-01A	CHEK2	chr22	29085123	-	THOC5	chr22	29932727	-
intron-3UTR	ENST00000411458	ENST00000537871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000411458	ENST00000439013		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000411458	ENST00000255688		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000411458	ENST00000354445		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
3UTR-3UTR	ENST00000539851	ENST00000537871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
3UTR-intron	ENST00000539851	ENST00000439013		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
3UTR-intron	ENST00000539851	ENST00000255688		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
3UTR-intron	ENST00000539851	ENST00000354445		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-3UTR	ENST00000377702	ENST00000537871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000377702	ENST00000439013		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000377702	ENST00000255688		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000377702	ENST00000354445		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-3UTR	ENST00000438980	ENST00000537871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000438980	ENST00000439013		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000438980	ENST00000255688		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
5CDS-intron	ENST00000438980	ENST00000354445		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-3UTR	ENST00000313074	ENST00000537871		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000313074	ENST00000439013		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000313074	ENST00000255688		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-intron	ENST00000313074	ENST00000354445		TCGA	LD	UCS	TCGA-NF-A4WX-01A	GPR137	chr11	64056614	+	RARRES3	chr11	63313621	+
intron-3CDS	ENST00000395290	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395290	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395290	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395290	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395290	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-3CDS	ENST00000358597	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000358597	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000358597	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000358597	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000358597	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-3CDS	ENST00000395292	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395292	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395292	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395292	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000395292	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-3CDS	ENST00000310513	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000310513	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000310513	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000310513	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000310513	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-3CDS	ENST00000361904	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000361904	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000361904	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000361904	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000361904	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-3CDS	ENST00000539455	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000539455	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000539455	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000539455	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000539455	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-3CDS	ENST00000531165	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000531165	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000531165	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000531165	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
5UTR-intron	ENST00000531165	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-3CDS	ENST00000532048	ENST00000298854		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000532048	ENST00000528356		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000532048	ENST00000352508		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000532048	ENST00000524487		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-intron	ENST00000532048	ENST00000529341		TCGA	LD	UCS	TCGA-NF-A4X2-01A	CELF1	chr11	47574544	-	RAPSN	chr11	47464366	-
intron-3CDS	ENST00000280772	ENST00000373053		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000280772	ENST00000357157		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000280772	ENST00000536019		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-intron	ENST00000280772	ENST00000605416		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
In-frame	ENST00000373827	ENST00000373053		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
In-frame	ENST00000373827	ENST00000357157		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
In-frame	ENST00000373827	ENST00000536019		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
5CDS-intron	ENST00000373827	ENST00000605416		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000355288	ENST00000373053		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000355288	ENST00000357157		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000355288	ENST00000536019		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-intron	ENST00000355288	ENST00000605416		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000503366	ENST00000373053		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000503366	ENST00000357157		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000503366	ENST00000536019		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-intron	ENST00000503366	ENST00000605416		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000510382	ENST00000373053		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000510382	ENST00000357157		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
5UTR-3CDS	ENST00000510382	ENST00000536019		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
5UTR-intron	ENST00000510382	ENST00000605416		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000460468	ENST00000373053		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000460468	ENST00000357157		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-3CDS	ENST00000460468	ENST00000536019		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
intron-intron	ENST00000460468	ENST00000605416		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ANK3	chr10	62374944	-	MCU	chr10	74594117	+
Frame-shit	ENST00000330386	ENST00000341846		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000330386	ENST00000524816		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000330386	ENST00000541857		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000330386	ENST00000525887		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000330386	ENST00000528870		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000330386	ENST00000529044		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000389561	ENST00000341846		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000389561	ENST00000524816		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000389561	ENST00000541857		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000389561	ENST00000525887		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000389561	ENST00000528870		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000389561	ENST00000529044		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000333577	ENST00000341846		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000333577	ENST00000524816		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000333577	ENST00000541857		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000333577	ENST00000525887		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000333577	ENST00000528870		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000333577	ENST00000529044		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000332482	ENST00000341846		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000332482	ENST00000524816		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000332482	ENST00000541857		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000332482	ENST00000525887		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000332482	ENST00000528870		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000332482	ENST00000529044		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000389562	ENST00000341846		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000389562	ENST00000524816		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000389562	ENST00000541857		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000389562	ENST00000525887		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000389562	ENST00000528870		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
5CDS-5UTR	ENST00000389562	ENST00000529044		TCGA	LD	UCS	TCGA-NF-A5CP-01A	EP400	chr12	132562119	+	TRIM29	chr11	119989029	-
Frame-shit	ENST00000453279	ENST00000336926		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
Frame-shit	ENST00000453279	ENST00000434438		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
5CDS-intron	ENST00000453279	ENST00000479835		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
In-frame	ENST00000257665	ENST00000336926		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
In-frame	ENST00000257665	ENST00000434438		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
5CDS-intron	ENST00000257665	ENST00000479835		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
5UTR-3CDS	ENST00000473168	ENST00000336926		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
5UTR-3CDS	ENST00000473168	ENST00000434438		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
5UTR-intron	ENST00000473168	ENST00000479835		TCGA	LD	UCS	TCGA-NF-A5CP-01A	POM121C	chr7	75066793	-	HIP1	chr7	75228565	-
5CDS-intron	ENST00000396981	ENST00000385018		TCGA	LD	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	MIR130B	chr22	22024202	+
5UTR-intron	ENST00000572484	ENST00000385018		TCGA	LD	UCS	TCGA-NF-A5CP-01A	UBE2G1	chr17	4269566	-	MIR130B	chr22	22024202	+
intron-3CDS	ENST00000561648	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000561648	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000563137	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
5UTR-3CDS	ENST00000563137	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000562871	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000562871	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000262383	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000262383	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000535559	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000535559	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000567169	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000567169	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000562520	ENST00000241261		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
intron-3CDS	ENST00000562520	ENST00000420541		TCGA	LD	UCS	TCGA-NF-A5CP-01A	ZNF423	chr16	49889646	-	TNFSF10	chr3	172232788	-
5CDS-intron	ENST00000536183	ENST00000438125		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000536183	ENST00000435769		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000536183	ENST00000343721		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000536183	ENST00000438904		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000433091	ENST00000438125		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000433091	ENST00000435769		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000433091	ENST00000343721		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000433091	ENST00000438904		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000222572	ENST00000438125		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000222572	ENST00000435769		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000222572	ENST00000343721		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
5CDS-intron	ENST00000222572	ENST00000438904		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
intron-intron	ENST00000483292	ENST00000438125		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
intron-intron	ENST00000483292	ENST00000435769		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
intron-intron	ENST00000483292	ENST00000343721		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
intron-intron	ENST00000483292	ENST00000438904		TCGA	LD	UCS	TCGA-NG-A4VU-01A	PON2	chr7	95053827	-	TYW1B	chr7	72040704	-
intron-3CDS	ENST00000606514	ENST00000367630		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
intron-3CDS	ENST00000606514	ENST00000367621		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
intron-intron	ENST00000606514	ENST00000452973		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
intron-intron	ENST00000606514	ENST00000491881		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
Frame-shit	ENST00000237283	ENST00000367630		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
Frame-shit	ENST00000237283	ENST00000367621		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
5CDS-intron	ENST00000237283	ENST00000452973		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
5CDS-intron	ENST00000237283	ENST00000491881		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
5UTR-3CDS	ENST00000367593	ENST00000367630		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
5UTR-3CDS	ENST00000367593	ENST00000367621		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
5UTR-intron	ENST00000367593	ENST00000452973		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
5UTR-intron	ENST00000367593	ENST00000491881		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	ADAT2	chr6	143771700	-	VTA1	chr6	142525122	+
In-frame	ENST00000340748	ENST00000541276		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
Frame-shit	ENST00000340748	ENST00000393708		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
5CDS-5UTR	ENST00000340748	ENST00000492239		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
5CDS-5UTR	ENST00000340748	ENST00000494368		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
In-frame	ENST00000540357	ENST00000541276		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
Frame-shit	ENST00000540357	ENST00000393708		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
5CDS-5UTR	ENST00000540357	ENST00000492239		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
5CDS-5UTR	ENST00000540357	ENST00000494368		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
In-frame	ENST00000359526	ENST00000541276		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
Frame-shit	ENST00000359526	ENST00000393708		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
5CDS-5UTR	ENST00000359526	ENST00000492239		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
5CDS-5UTR	ENST00000359526	ENST00000494368		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
intron-3CDS	ENST00000589538	ENST00000541276		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
intron-3CDS	ENST00000589538	ENST00000393708		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
intron-5UTR	ENST00000589538	ENST00000492239		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
intron-5UTR	ENST00000589538	ENST00000494368		TCGA	RV	UVM	TCGA-V4-A9EX-01A	DNMT1	chr19	10283766	-	FDX1L	chr19	10426435	-
intron-5UTR	ENST00000309311	ENST00000318607		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-5UTR	ENST00000309311	ENST00000519004		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-5UTR	ENST00000309311	ENST00000522387		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-intron	ENST00000309311	ENST00000519596		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-5UTR	ENST00000600720	ENST00000318607		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-5UTR	ENST00000600720	ENST00000519004		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-5UTR	ENST00000600720	ENST00000522387		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
intron-intron	ENST00000600720	ENST00000519596		TCGA	RV	UVM	TCGA-V4-A9E7-01A	EEF2	chr19	3972316	-	PABPC1	chr8	101734220	-
Frame-shit	ENST00000359015	ENST00000369110		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	136960681	-	PREP	chr6	105781380	-
5UTR-3CDS	ENST00000355845	ENST00000369110		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	136960681	-	PREP	chr6	105781380	-
intron-3CDS	ENST00000463140	ENST00000369110		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	136960681	-	PREP	chr6	105781380	-
5CDS-intron	ENST00000406610	ENST00000261024		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000406610	ENST00000418714		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000462231	ENST00000261024		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000462231	ENST00000418714		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000349953	ENST00000261024		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000349953	ENST00000418714		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000358768	ENST00000261024		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000358768	ENST00000418714		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000351153	ENST00000261024		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
5CDS-intron	ENST00000351153	ENST00000418714		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000488622	ENST00000261024		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000488622	ENST00000418714		TCGA	RV	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410842	+	SLC40A1	chr2	190448146	-
In-frame	ENST00000393004	ENST00000342056		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000355194		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000370398		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000370392		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000355635		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000414165		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000402622		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000393004	ENST00000403813		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000342056		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000355194		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000370398		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000370392		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000355635		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000414165		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000402622		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000237172	ENST00000403813		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000342056		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000355194		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000370398		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000370392		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000355635		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000414165		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000402622		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000498523	ENST00000403813		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000342056		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000355194		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000370398		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000370392		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000355635		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000414165		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000402622		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
intron-3CDS	ENST00000370020	ENST00000403813		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FILIP1	chr6	76124413	-	KCNQ5	chr6	73814980	+
In-frame	ENST00000524189	ENST00000327671		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
Frame-shit	ENST00000524189	ENST00000518672		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
In-frame	ENST00000524189	ENST00000524021		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
5CDS-intron	ENST00000524189	ENST00000335589		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
5CDS-intron	ENST00000524189	ENST00000518076		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
In-frame	ENST00000521515	ENST00000327671		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
Frame-shit	ENST00000521515	ENST00000518672		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
In-frame	ENST00000521515	ENST00000524021		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
5CDS-intron	ENST00000521515	ENST00000335589		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
5CDS-intron	ENST00000521515	ENST00000518076		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
intron-3CDS	ENST00000404075	ENST00000327671		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
intron-3CDS	ENST00000404075	ENST00000518672		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
intron-3CDS	ENST00000404075	ENST00000524021		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
intron-intron	ENST00000404075	ENST00000335589		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
intron-intron	ENST00000404075	ENST00000518076		TCGA	RV	UVM	TCGA-VD-A8KM-01A	KIF13B	chr8	29102863	-	FUT10	chr8	33230322	-
In-frame	ENST00000545951	ENST00000511469		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000545951	ENST00000264218		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000545951	ENST00000505262		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000545951	ENST00000507338		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
5CDS-5UTR	ENST00000545951	ENST00000515325		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000382839	ENST00000511469		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000382839	ENST00000264218		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000382839	ENST00000505262		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000382839	ENST00000507338		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
5CDS-5UTR	ENST00000382839	ENST00000515325		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000324666	ENST00000511469		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000324666	ENST00000264218		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000324666	ENST00000505262		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000324666	ENST00000507338		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
5CDS-5UTR	ENST00000324666	ENST00000515325		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000502458	ENST00000511469		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000502458	ENST00000264218		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000502458	ENST00000505262		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000502458	ENST00000507338		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
5CDS-5UTR	ENST00000502458	ENST00000515325		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000505311	ENST00000511469		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000505311	ENST00000264218		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000505311	ENST00000505262		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
In-frame	ENST00000505311	ENST00000507338		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
5CDS-5UTR	ENST00000505311	ENST00000515325		TCGA	RV	UVM	TCGA-YZ-A983-01A	FAM193A	chr4	2665015	+	NMU	chr4	56496627	-
5CDS-intron	ENST00000517503	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000517503	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000292494	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000429120	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521699	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000520531	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000520466	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000521003	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522528	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522971	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519611	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
5CDS-intron	ENST00000521182	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519546	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000523847	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000522024	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000404460		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000303908		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000409158		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000403716		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000234115		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000439822		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000487980		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000438882		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000538982		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000409612		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
intron-intron	ENST00000519615	ENST00000409279		TCGA	RV	UVM	TCGA-VD-AA8O-01A	LY6E	chr8	144103826	+	PLEKHB2	chr2	131876464	+
Frame-shit	ENST00000255681	ENST00000366794		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5CDS-intron	ENST00000255681	ENST00000490921		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5CDS-intron	ENST00000255681	ENST00000366792		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5CDS-intron	ENST00000255681	ENST00000366791		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5CDS-intron	ENST00000255681	ENST00000366790		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5UTR-3CDS	ENST00000538595	ENST00000366794		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5UTR-intron	ENST00000538595	ENST00000490921		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5UTR-intron	ENST00000538595	ENST00000366792		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5UTR-intron	ENST00000538595	ENST00000366791		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5UTR-intron	ENST00000538595	ENST00000366790		TCGA	RV	UVM	TCGA-VD-A8KO-01A	MACROD1	chr11	63918711	-	PARP1	chr1	226590080	-
5UTR-5UTR	ENST00000588847	ENST00000537330		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588847	ENST00000570891		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588847	ENST00000306801		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588847	ENST00000544334		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-intron	ENST00000588847	ENST00000575542		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588061	ENST00000537330		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588061	ENST00000570891		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588061	ENST00000306801		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000588061	ENST00000544334		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-intron	ENST00000588061	ENST00000575542		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000335749	ENST00000537330		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000335749	ENST00000570891		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000335749	ENST00000306801		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000335749	ENST00000544334		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-intron	ENST00000335749	ENST00000575542		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000301624	ENST00000537330		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000301624	ENST00000570891		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000301624	ENST00000306801		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-5UTR	ENST00000301624	ENST00000544334		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-intron	ENST00000301624	ENST00000575542		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000541771	ENST00000537330		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000541771	ENST00000570891		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000541771	ENST00000306801		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000541771	ENST00000544334		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-intron	ENST00000541771	ENST00000575542		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000544502	ENST00000537330		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000544502	ENST00000570891		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000544502	ENST00000306801		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-5UTR	ENST00000544502	ENST00000544334		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
intron-intron	ENST00000544502	ENST00000575542		TCGA	RV	UVM	TCGA-WC-A884-01A	TNRC6C	chr17	76001160	+	RPTOR	chr17	78704360	+
5UTR-3CDS	ENST00000368134	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
5UTR-3CDS	ENST00000368134	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
5UTR-3CDS	ENST00000368134	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000457563	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000457563	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000457563	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000439090	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000439090	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000439090	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000437477	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000437477	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000437477	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000532763	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000532763	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000532763	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000533296	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000533296	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000533296	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000324172	ENST00000413795		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000324172	ENST00000369138		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000324172	ENST00000421544		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000358361		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000318991		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000369137		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000369134		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130634123	-	GRIK2	chr6	102483216	+
In-frame	ENST00000325321	ENST00000369061		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000357555		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000358487		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000356226		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369060		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369059		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000346997		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000457416		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000351936		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000360144		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000325321	ENST00000369056		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000325321	ENST00000490349		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000325321	ENST00000359354		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-intron	ENST00000325321	ENST00000478859		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369061		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000357555		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000358487		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000356226		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369060		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369059		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000346997		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000457416		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000351936		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000360144		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-3CDS	ENST00000391810	ENST00000369056		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-5UTR	ENST00000391810	ENST00000490349		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-5UTR	ENST00000391810	ENST00000359354		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5UTR-intron	ENST00000391810	ENST00000478859		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369061		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000357555		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000358487		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000356226		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369060		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369059		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000346997		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000457416		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000351936		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000360144		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000358049	ENST00000369056		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000358049	ENST00000490349		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-5UTR	ENST00000358049	ENST00000359354		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
5CDS-intron	ENST00000358049	ENST00000478859		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369061		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000357555		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000358487		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000356226		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369060		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369059		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000346997		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000457416		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000351936		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000360144		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-3CDS	ENST00000597509	ENST00000369056		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-5UTR	ENST00000597509	ENST00000490349		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-5UTR	ENST00000597509	ENST00000359354		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
intron-intron	ENST00000597509	ENST00000478859		TCGA	RV	UVM	TCGA-V4-A9EA-01A	KLK2	chr19	51376775	+	FGFR2	chr10	123310973	-
In-frame	ENST00000359015	ENST00000193322		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	137112848	-	OSTM1	chr6	108385503	-
5CDS-intron	ENST00000359015	ENST00000492130		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	137112848	-	OSTM1	chr6	108385503	-
intron-3CDS	ENST00000355845	ENST00000193322		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	137112848	-	OSTM1	chr6	108385503	-
intron-intron	ENST00000355845	ENST00000492130		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	137112848	-	OSTM1	chr6	108385503	-
intron-3CDS	ENST00000463140	ENST00000193322		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	137112848	-	OSTM1	chr6	108385503	-
intron-intron	ENST00000463140	ENST00000492130		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	MAP3K5	chr6	137112848	-	OSTM1	chr6	108385503	-
5UTR-3CDS	ENST00000394395	ENST00000586700		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
5UTR-3CDS	ENST00000394395	ENST00000300618		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
5UTR-3CDS	ENST00000586023	ENST00000586700		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
5UTR-3CDS	ENST00000586023	ENST00000300618		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000225396	ENST00000586700		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000225396	ENST00000300618		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000417170	ENST00000586700		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000417170	ENST00000300618		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000591992	ENST00000586700		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000591992	ENST00000300618		TCGA	RV	UVM	TCGA-V4-A9EW-01A	TADA2A	chr17	35767040	+	C17orf78	chr17	35734817	+
intron-3CDS	ENST00000361151	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-3CDS	ENST00000361451	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000361451	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000361451	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000361451	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000361451	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000588933	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588933	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588933	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588933	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588933	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000588221	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588221	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588221	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588221	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588221	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000592904	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-3CDS	ENST00000590306	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000590306	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000590306	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000590306	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000590306	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000592292	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000588013	ENST00000395045		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588013	ENST00000590821		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588013	ENST00000395040		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588013	ENST00000310132		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
intron-intron	ENST00000588013	ENST00000585778		TCGA	RV	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9544344	-	MATK	chr19	3784031	-
5UTR-3CDS	ENST00000368682	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000368682	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000368682	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-intron	ENST00000368682	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000354650	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000354650	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000354650	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-intron	ENST00000354650	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000229471	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000229471	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000229471	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-intron	ENST00000229471	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000368667	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000368667	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000368667	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-intron	ENST00000368667	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000368678	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000368678	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000368678	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-intron	ENST00000368678	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000229470	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000229470	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000229470	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-intron	ENST00000229470	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000356013	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000356013	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-3CDS	ENST00000356013	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
5UTR-intron	ENST00000356013	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000538466	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000538466	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000538466	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-intron	ENST00000538466	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000476769	ENST00000368911		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000476769	ENST00000323817		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-3CDS	ENST00000476769	ENST00000413605		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
intron-intron	ENST00000476769	ENST00000497709		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	FYN	chr6	112101769	-	CDK19	chr6	110935869	-
Frame-shit	ENST00000370597	ENST00000280326		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000370597	ENST00000503026		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000370597	ENST00000515390		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000370597	ENST00000515676		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000370597	ENST00000506600		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
In-frame	ENST00000298819	ENST00000280326		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000298819	ENST00000503026		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000298819	ENST00000515390		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000298819	ENST00000515676		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5CDS-intron	ENST00000298819	ENST00000506600		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000370591	ENST00000280326		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000370591	ENST00000503026		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000370591	ENST00000515390		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000370591	ENST00000515676		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000370591	ENST00000506600		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-3CDS	ENST00000468549	ENST00000280326		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000468549	ENST00000503026		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000468549	ENST00000515390		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000468549	ENST00000515676		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
intron-intron	ENST00000468549	ENST00000506600		TCGA	RV	UVM	TCGA-VD-A8KD-01A	CRTAC1	chr10	99624758	-	CCT5	chr5	10250033	+
5UTR-3CDS	ENST00000262043	ENST00000275262		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
5UTR-3CDS	ENST00000262043	ENST00000392127		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
5UTR-3CDS	ENST00000262043	ENST00000453779		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
5UTR-3CDS	ENST00000262043	ENST00000361752		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
5UTR-3CDS	ENST00000262043	ENST00000361195		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
5UTR-3CDS	ENST00000262043	ENST00000424802		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000509330	ENST00000275262		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000509330	ENST00000392127		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000509330	ENST00000453779		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000509330	ENST00000361752		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000509330	ENST00000361195		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000509330	ENST00000424802		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000393387	ENST00000275262		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000393387	ENST00000392127		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000393387	ENST00000453779		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000393387	ENST00000361752		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000393387	ENST00000361195		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000393387	ENST00000424802		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000420043	ENST00000275262		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000420043	ENST00000392127		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000420043	ENST00000453779		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000420043	ENST00000361752		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000420043	ENST00000361195		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
intron-3CDS	ENST00000420043	ENST00000424802		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	PHF3	chr6	64346055	+	QKI	chr6	163983014	+
In-frame	ENST00000412585	ENST00000404984		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
In-frame	ENST00000412585	ENST00000402050		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
In-frame	ENST00000412585	ENST00000438376		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
In-frame	ENST00000412585	ENST00000325979		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000412585	ENST00000497572		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000425848	ENST00000404984		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000425848	ENST00000402050		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000425848	ENST00000438376		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000425848	ENST00000325979		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-intron	ENST00000425848	ENST00000497572		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000450871	ENST00000404984		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000450871	ENST00000402050		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000450871	ENST00000438376		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000450871	ENST00000325979		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-intron	ENST00000450871	ENST00000497572		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000359635	ENST00000404984		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000359635	ENST00000402050		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000359635	ENST00000438376		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000359635	ENST00000325979		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-intron	ENST00000359635	ENST00000497572		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000435618	ENST00000404984		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000435618	ENST00000402050		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000435618	ENST00000438376		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000435618	ENST00000325979		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-intron	ENST00000435618	ENST00000497572		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000421349	ENST00000404984		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000421349	ENST00000402050		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000421349	ENST00000438376		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-3CDS	ENST00000421349	ENST00000325979		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
intron-intron	ENST00000421349	ENST00000497572		TCGA	RV	UVM	TCGA-V4-A9EH-01A	HLA-B	chr6	31321649	-	IQCE	chr7	2641075	+
5CDS-intron	ENST00000394936	ENST00000484427		TCGA	RV	UVM	TCGA-V4-A9EU-01A	PSAP	chr10	73576058	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000394936	ENST00000371764		TCGA	RV	UVM	TCGA-V4-A9EU-01A	PSAP	chr10	73576058	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000394934	ENST00000484427		TCGA	RV	UVM	TCGA-V4-A9EU-01A	PSAP	chr10	73576058	-	DDX27	chr20	47849303	+
5CDS-intron	ENST00000394934	ENST00000371764		TCGA	RV	UVM	TCGA-V4-A9EU-01A	PSAP	chr10	73576058	-	DDX27	chr20	47849303	+
5UTR-5UTR	ENST00000296978	ENST00000368682		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000296978	ENST00000354650		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-intron	ENST00000296978	ENST00000229471		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000296978	ENST00000368667		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-intron	ENST00000296978	ENST00000368678		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000296978	ENST00000229470		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-5UTR	ENST00000296978	ENST00000356013		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-intron	ENST00000296978	ENST00000538466		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
5UTR-intron	ENST00000296978	ENST00000476769		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000545622	ENST00000368682		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000545622	ENST00000354650		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000545622	ENST00000229471		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000545622	ENST00000368667		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000545622	ENST00000368678		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000545622	ENST00000229470		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000545622	ENST00000356013		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000545622	ENST00000538466		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000545622	ENST00000476769		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000392429	ENST00000368682		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000392429	ENST00000354650		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000392429	ENST00000229471		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000392429	ENST00000368667		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000392429	ENST00000368678		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000392429	ENST00000229470		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-5UTR	ENST00000392429	ENST00000356013		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000392429	ENST00000538466		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
intron-intron	ENST00000392429	ENST00000476769		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	TMEM200A	chr6	130687669	+	FYN	chr6	112101838	-
In-frame	ENST00000509122	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
intron-3CDS	ENST00000512981	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
intron-3CDS	ENST00000396448	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
In-frame	ENST00000264312	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
In-frame	ENST00000381473	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
intron-3CDS	ENST00000444354	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
intron-3CDS	ENST00000506801	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
intron-3CDS	ENST00000425583	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
In-frame	ENST00000508293	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
In-frame	ENST00000513391	ENST00000288135		TCGA	RV	UVM	TCGA-V4-A9F7-01A	OCIAD1	chr4	48859382	+	KIT	chr4	55589750	+
intron-intron	ENST00000544301	ENST00000309364		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000359180		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000317589		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000355397		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000429027		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000539256		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000299275		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000538714		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000543806		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000424268		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000540972		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000544301	ENST00000510738		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000309364		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000359180		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000317589		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000355397		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000429027		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000539256		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000299275		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000538714		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000543806		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000424268		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000540972		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000224237	ENST00000510738		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000309364		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000359180		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000317589		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000355397		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000429027		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000539256		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000299275		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000538714		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000543806		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000424268		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000540972		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
intron-intron	ENST00000485947	ENST00000510738		TCGA	RV	UVM	TCGA-VD-A8K9-01A	VIM	chr10	17279592	+	PLEKHA5	chr12	19441012	+
5CDS-intron	ENST00000361731	ENST00000369754		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SFT2D1	chr6	166755907	-	FAM46A	chr6	82204830	-
5CDS-intron	ENST00000361731	ENST00000320172		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SFT2D1	chr6	166755907	-	FAM46A	chr6	82204830	-
5CDS-intron	ENST00000361731	ENST00000369756		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SFT2D1	chr6	166755907	-	FAM46A	chr6	82204830	-
5UTR-intron	ENST00000487841	ENST00000369754		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SFT2D1	chr6	166755907	-	FAM46A	chr6	82204830	-
5UTR-intron	ENST00000487841	ENST00000320172		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SFT2D1	chr6	166755907	-	FAM46A	chr6	82204830	-
5UTR-intron	ENST00000487841	ENST00000369756		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	SFT2D1	chr6	166755907	-	FAM46A	chr6	82204830	-
Frame-shit	ENST00000367941	ENST00000370577		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	STX7	chr6	132824585	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000367941	ENST00000370570		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	STX7	chr6	132824585	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000367937	ENST00000370577		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	STX7	chr6	132824585	-	LMBRD1	chr6	70386433	-
Frame-shit	ENST00000367937	ENST00000370570		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	STX7	chr6	132824585	-	LMBRD1	chr6	70386433	-
5UTR-3CDS	ENST00000448348	ENST00000370577		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	STX7	chr6	132824585	-	LMBRD1	chr6	70386433	-
5UTR-3CDS	ENST00000448348	ENST00000370570		TCGA	RV	UVM	TCGA-VD-A8KJ-01A	STX7	chr6	132824585	-	LMBRD1	chr6	70386433	-
In-frame	ENST00000355528	ENST00000398519		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
In-frame	ENST00000355528	ENST00000314028		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000355528	ENST00000392334		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000355528	ENST00000578904		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000397466	ENST00000398519		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000397466	ENST00000314028		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
5UTR-3CDS	ENST00000397466	ENST00000392334		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
5UTR-intron	ENST00000397466	ENST00000578904		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
In-frame	ENST00000539345	ENST00000398519		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
In-frame	ENST00000539345	ENST00000314028		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
Frame-shit	ENST00000539345	ENST00000392334		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
5CDS-intron	ENST00000539345	ENST00000578904		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000576691	ENST00000398519		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000576691	ENST00000314028		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
intron-3CDS	ENST00000576691	ENST00000392334		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
intron-intron	ENST00000576691	ENST00000578904		TCGA	LD	UVM	TCGA-V4-A9EA-01A	TBCD	chr17	80710253	+	CSNK1D	chr17	80223672	-
intron-intron	ENST00000406610	ENST00000261024		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000406610	ENST00000418714		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000462231	ENST00000261024		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000462231	ENST00000418714		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000349953	ENST00000261024		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000349953	ENST00000418714		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000358768	ENST00000261024		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000358768	ENST00000418714		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000351153	ENST00000261024		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000351153	ENST00000418714		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000488622	ENST00000261024		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
intron-intron	ENST00000488622	ENST00000418714		TCGA	LD	UVM	TCGA-V4-A9EK-01A	PARD3B	chr2	205410894	+	SLC40A1	chr2	190448146	-
In-frame	ENST00000349703	ENST00000295958		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
In-frame	ENST00000349703	ENST00000511809		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
5CDS-5UTR	ENST00000349703	ENST00000510628		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
In-frame	ENST00000381897	ENST00000295958		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
In-frame	ENST00000381897	ENST00000511809		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
5CDS-5UTR	ENST00000381897	ENST00000510628		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
5UTR-3CDS	ENST00000418436	ENST00000295958		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
5UTR-3CDS	ENST00000418436	ENST00000511809		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
5UTR-5UTR	ENST00000418436	ENST00000510628		TCGA	LD	UVM	TCGA-V4-A9EX-01A	RFC1	chr4	39367859	-	SMIM14	chr4	39574083	-
Frame-shit	ENST00000356316	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000356316	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000318023	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000318023	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000357568	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000357568	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000349748	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000349748	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000397163	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000397163	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000397200	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000397200	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000337571	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000337571	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000569136	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000569136	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000561817	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000561817	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000397204	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
5CDS-intron	ENST00000397204	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
3UTR-3CDS	ENST00000562199	ENST00000291386		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
3UTR-intron	ENST00000562199	ENST00000359060		TCGA	LD	UVM	TCGA-V4-A9F7-01A	CAPN3	chr15	42702193	+	SSU72	chr1	1480382	-
Frame-shit	ENST00000407471	ENST00000401702		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000407471	ENST00000397326		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
In-frame	ENST00000407471	ENST00000397328		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000407471	ENST00000359787		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000407471	ENST00000406324		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
5CDS-intron	ENST00000407471	ENST00000472240		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000435822	ENST00000401702		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000435822	ENST00000397326		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
In-frame	ENST00000435822	ENST00000397328		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000435822	ENST00000359787		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000435822	ENST00000406324		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
5CDS-intron	ENST00000435822	ENST00000472240		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000490922	ENST00000401702		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000490922	ENST00000397326		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000490922	ENST00000397328		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000490922	ENST00000359787		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000490922	ENST00000406324		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-intron	ENST00000490922	ENST00000472240		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000404664	ENST00000401702		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000404664	ENST00000397326		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000404664	ENST00000397328		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000404664	ENST00000359787		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-3CDS	ENST00000404664	ENST00000406324		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
intron-intron	ENST00000404664	ENST00000472240		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000447813	ENST00000401702		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000447813	ENST00000397326		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
In-frame	ENST00000447813	ENST00000397328		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000447813	ENST00000359787		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000447813	ENST00000406324		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
5CDS-intron	ENST00000447813	ENST00000472240		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000402766	ENST00000401702		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000402766	ENST00000397326		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
In-frame	ENST00000402766	ENST00000397328		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000402766	ENST00000359787		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000402766	ENST00000406324		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
5CDS-intron	ENST00000402766	ENST00000472240		TCGA	LD	UVM	TCGA-VD-A8KE-01A	GUCD1	chr22	24950917	-	MB	chr22	36003490	-
Frame-shit	ENST00000369485	ENST00000275159		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
Frame-shit	ENST00000369485	ENST00000398212		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
5CDS-intron	ENST00000369485	ENST00000398197		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
Frame-shit	ENST00000265607	ENST00000275159		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
Frame-shit	ENST00000265607	ENST00000398212		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
5CDS-intron	ENST00000265607	ENST00000398197		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
In-frame	ENST00000538899	ENST00000275159		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
In-frame	ENST00000538899	ENST00000398212		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
5CDS-intron	ENST00000538899	ENST00000398197		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
intron-3CDS	ENST00000369475	ENST00000275159		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
intron-3CDS	ENST00000369475	ENST00000398212		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
intron-intron	ENST00000369475	ENST00000398197		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	RNGTT	chr6	89388072	-	TBC1D32	chr6	121642940	-
5UTR-3CDS	ENST00000368134	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
5UTR-3CDS	ENST00000368134	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
5UTR-3CDS	ENST00000368134	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
5UTR-intron	ENST00000368134	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000457563	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000457563	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000457563	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000457563	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000439090	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000439090	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000439090	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000439090	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000437477	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000437477	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000437477	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000437477	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000532763	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000532763	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000532763	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000532763	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000533296	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000533296	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000533296	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000533296	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000324172	ENST00000413795		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000324172	ENST00000369138		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-3CDS	ENST00000324172	ENST00000421544		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000358361		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000318991		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000369137		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
intron-intron	ENST00000324172	ENST00000369134		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SAMD3	chr6	130686265	-	GRIK2	chr6	102483216	+
Frame-shit	ENST00000275227	ENST00000334379		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
Frame-shit	ENST00000275227	ENST00000368332		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5CDS-intron	ENST00000275227	ENST00000450358		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5CDS-intron	ENST00000275227	ENST00000489934		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-3CDS	ENST00000538764	ENST00000334379		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-3CDS	ENST00000538764	ENST00000368332		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-intron	ENST00000538764	ENST00000450358		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-intron	ENST00000538764	ENST00000489934		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
Frame-shit	ENST00000367918	ENST00000334379		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
Frame-shit	ENST00000367918	ENST00000368332		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5CDS-intron	ENST00000367918	ENST00000450358		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5CDS-intron	ENST00000367918	ENST00000489934		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-3CDS	ENST00000460518	ENST00000334379		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-3CDS	ENST00000460518	ENST00000368332		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-intron	ENST00000460518	ENST00000450358		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-intron	ENST00000460518	ENST00000489934		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	SLC18B1	chr6	133118121	-	TRMT11	chr6	126342306	+
5UTR-intron	ENST00000358372	ENST00000252660		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	WTAP	chr6	160148365	+	MAS1	chr6	160327952	+
intron-intron	ENST00000337387	ENST00000252660		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	WTAP	chr6	160148365	+	MAS1	chr6	160327952	+
intron-intron	ENST00000494513	ENST00000252660		TCGA	LD	UVM	TCGA-VD-A8KJ-01A	WTAP	chr6	160148365	+	MAS1	chr6	160327952	+
Frame-shit	ENST00000356663	ENST00000329267		TCGA	LD	UVM	TCGA-VD-A8KM-01A	TMEM259	chr19	1020771	-	PRSS57	chr19	694970	-
Frame-shit	ENST00000333175	ENST00000329267		TCGA	LD	UVM	TCGA-VD-A8KM-01A	TMEM259	chr19	1020771	-	PRSS57	chr19	694970	-
intron-3CDS	ENST00000361151	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361151	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000361451	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361451	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361451	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361451	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000361451	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-3CDS	ENST00000588933	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588933	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588933	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588933	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588933	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-3CDS	ENST00000588221	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588221	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588221	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588221	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588221	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000592904	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592904	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000590306	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000590306	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000590306	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000590306	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000590306	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-3CDS	ENST00000592292	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
intron-intron	ENST00000592292	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-3CDS	ENST00000588013	ENST00000395045		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588013	ENST00000590821		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588013	ENST00000395040		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588013	ENST00000310132		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
5UTR-intron	ENST00000588013	ENST00000585778		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF266	chr19	9545474	-	MATK	chr19	3784031	-
In-frame	ENST00000304060	ENST00000270517		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
In-frame	ENST00000304060	ENST00000588998		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
In-frame	ENST00000304060	ENST00000252440		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
In-frame	ENST00000304060	ENST00000417981		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
In-frame	ENST00000304060	ENST00000591104		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
In-frame	ENST00000304060	ENST00000592312		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
5CDS-5UTR	ENST00000304060	ENST00000591352		TCGA	LD	UVM	TCGA-VD-AA8M-01A	ZNF440	chr19	11925265	+	ECSIT	chr19	11618863	-
In-frame	ENST00000301785	ENST00000394773		TCGA	LD	UVM	TCGA-WC-A885-01A	HNRNPUL2	chr11	62484461	-	EML3	chr11	62379068	-
In-frame	ENST00000301785	ENST00000278845		TCGA	LD	UVM	TCGA-WC-A885-01A	HNRNPUL2	chr11	62484461	-	EML3	chr11	62379068	-
5CDS-intron	ENST00000301785	ENST00000531557		TCGA	LD	UVM	TCGA-WC-A885-01A	HNRNPUL2	chr11	62484461	-	EML3	chr11	62379068	-
5CDS-5UTR	ENST00000301785	ENST00000494176		TCGA	LD	UVM	TCGA-WC-A885-01A	HNRNPUL2	chr11	62484461	-	EML3	chr11	62379068	-
5CDS-5UTR	ENST00000301785	ENST00000529309		TCGA	LD	UVM	TCGA-WC-A885-01A	HNRNPUL2	chr11	62484461	-	EML3	chr11	62379068	-
5CDS-intron	ENST00000301785	ENST00000438258		TCGA	LD	UVM	TCGA-WC-A885-01A	HNRNPUL2	chr11	62484461	-	EML3	chr11	62379068	-
intron-intron	ENST00000406070	ENST00000568224		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000535392		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000359984		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000360019		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000569430		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000333496		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000355477		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000354630		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000357806		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000357857		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000567963		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000395653		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000565316		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000357076		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000406070	ENST00000567160		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000568224		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000535392		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000359984		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000360019		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000569430		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000333496		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000355477		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000354630		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000357806		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000357857		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000567963		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000395653		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000565316		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000357076		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000446844	ENST00000567160		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000568224		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000535392		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000359984		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000360019		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000569430		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000333496		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000355477		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000354630		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000357806		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000357857		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000567963		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000395653		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000565316		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000357076		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
intron-intron	ENST00000471557	ENST00000567160		ChiTaRS3.1			AA368357	PSG7	chr19	43439585	-	CLN3	chr16	28502882	-
5UTR-intron	ENST00000416067	ENST00000345843		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-intron	ENST00000416067	ENST00000342295		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-intron	ENST00000416067	ENST00000361572		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-intron	ENST00000416067	ENST00000348160		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-5UTR	ENST00000416067	ENST00000355476		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-3UTR	ENST00000416067	ENST00000511401		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-intron	ENST00000416067	ENST00000507561		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-5UTR	ENST00000416067	ENST00000504907		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
5UTR-5UTR	ENST00000416067	ENST00000342320		ChiTaRS3.1			DC301955	TEKT4P2	chr21	9966322	-	RBPJ	chr4	26364067	+
3UTR-intron	ENST00000458013	ENST00000291442		ChiTaRS3.1			AA397701	SNX27	chr1	151668790	+	NR2F6	chr19	17351403	-
3UTR-intron	ENST00000368843	ENST00000291442		ChiTaRS3.1			AA397701	SNX27	chr1	151668790	+	NR2F6	chr19	17351403	-
intron-intron	ENST00000368838	ENST00000291442		ChiTaRS3.1			AA397701	SNX27	chr1	151668790	+	NR2F6	chr19	17351403	-
intron-intron	ENST00000482791	ENST00000291442		ChiTaRS3.1			AA397701	SNX27	chr1	151668790	+	NR2F6	chr19	17351403	-
3UTR-3CDS	ENST00000453194	ENST00000260197		ChiTaRS3.1			EG327778	MYH16	chr7	98851404	+	SORL1	chr11	121367580	+
3UTR-3UTR	ENST00000453194	ENST00000532451		ChiTaRS3.1			EG327778	MYH16	chr7	98851404	+	SORL1	chr11	121367580	+
3UTR-intron	ENST00000453194	ENST00000525532		ChiTaRS3.1			EG327778	MYH16	chr7	98851404	+	SORL1	chr11	121367580	+
3UTR-intron	ENST00000453194	ENST00000532694		ChiTaRS3.1			EG327778	MYH16	chr7	98851404	+	SORL1	chr11	121367580	+
3UTR-intron	ENST00000453194	ENST00000534286		ChiTaRS3.1			EG327778	MYH16	chr7	98851404	+	SORL1	chr11	121367580	+
3UTR-intron	ENST00000453194	ENST00000527934		ChiTaRS3.1			EG327778	MYH16	chr7	98851404	+	SORL1	chr11	121367580	+
intron-3UTR	ENST00000378566	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378566	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378566	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378566	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378566	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378566	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378566	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378566	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378566	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000603301	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000603301	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000603301	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000488109	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000488109	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000488109	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000322813	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000322813	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000322813	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605244	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000605244	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000605244	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378561	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378561	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378561	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378557	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378557	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378557	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000378554	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378554	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000378554	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000378566		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000603301		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000488109		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000322813		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000605244		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000378561		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-3UTR	ENST00000605392	ENST00000378557		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000605392	ENST00000378554		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
intron-intron	ENST00000605392	ENST00000605392		ChiTaRS3.1			AA224906	FAM214B	chr9	35104959	-	FAM214B	chr9	35105007	+
5UTR-intron	ENST00000449886	ENST00000545391		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000449886	ENST00000361171		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000449886	ENST00000436593		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000449886	ENST00000535766		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000449886	ENST00000485886		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000373464	ENST00000545391		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000373464	ENST00000361171		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000373464	ENST00000436593		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000373464	ENST00000535766		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
5UTR-intron	ENST00000373464	ENST00000485886		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000373457	ENST00000545391		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000373457	ENST00000361171		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000373457	ENST00000436593		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000373457	ENST00000535766		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000373457	ENST00000485886		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000497064	ENST00000545391		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000497064	ENST00000361171		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000497064	ENST00000436593		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000497064	ENST00000535766		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-intron	ENST00000497064	ENST00000485886		ChiTaRS3.1			DA310064	ZBTB43	chr9	129567412	+	MVB12B	chr9	129184130	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766250	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766250	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000493485	ENST00000493485		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000494186		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000331410		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000483089		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000448667		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000379724		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000493485		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000494186		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000331410		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000483089		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000448667		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000379724		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000493485		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000494186		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000331410		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000483089		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000448667		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000379724		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000493485		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000494186		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000331410		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000483089		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000448667		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000379724		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000493485		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000494186		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000331410		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000483089		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000448667		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000379724		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000493485		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000494186		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000331410		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000483089		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000448667		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000379724		ChiTaRS3.1			AA664651	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
In-frame	ENST00000598441	ENST00000450095		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
Frame-shit	ENST00000598441	ENST00000556278		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
In-frame	ENST00000598441	ENST00000378842		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
5CDS-intron	ENST00000598441	ENST00000488412		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
In-frame	ENST00000221448	ENST00000450095		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
Frame-shit	ENST00000221448	ENST00000556278		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
In-frame	ENST00000221448	ENST00000378842		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
5CDS-intron	ENST00000221448	ENST00000488412		ChiTaRS3.1			CV351576	SNRNP70	chr19	49611448	+	GALT	chr9	34648372	+
In-frame	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF487906	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000331434	ENST00000331434		ChiTaRS3.1			BM696889	C8orf33	chr8	146278027	-	C8orf33	chr8	146277901	+
In-frame	ENST00000397498	ENST00000449576		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
In-frame	ENST00000397498	ENST00000396099		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
In-frame	ENST00000397498	ENST00000425416		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5CDS-5UTR	ENST00000397498	ENST00000256720		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5CDS-intron	ENST00000397498	ENST00000396097		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5CDS-intron	ENST00000397498	ENST00000404113		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5CDS-intron	ENST00000397498	ENST00000464517		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5CDS-intron	ENST00000397498	ENST00000396098		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-3CDS	ENST00000573392	ENST00000449576		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-3CDS	ENST00000573392	ENST00000396099		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-3CDS	ENST00000573392	ENST00000425416		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-5UTR	ENST00000573392	ENST00000256720		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000573392	ENST00000396097		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000573392	ENST00000404113		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000573392	ENST00000464517		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000573392	ENST00000396098		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-3CDS	ENST00000574938	ENST00000449576		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-3CDS	ENST00000574938	ENST00000396099		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-3CDS	ENST00000574938	ENST00000425416		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-5UTR	ENST00000574938	ENST00000256720		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000574938	ENST00000396097		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000574938	ENST00000404113		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000574938	ENST00000464517		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000574938	ENST00000396098		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-3CDS	ENST00000570561	ENST00000449576		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-3CDS	ENST00000570561	ENST00000396099		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-3CDS	ENST00000570561	ENST00000425416		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-5UTR	ENST00000570561	ENST00000256720		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000570561	ENST00000396097		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000570561	ENST00000404113		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000570561	ENST00000464517		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5UTR-intron	ENST00000570561	ENST00000396098		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-3CDS	ENST00000576135	ENST00000449576		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-3CDS	ENST00000576135	ENST00000396099		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-3CDS	ENST00000576135	ENST00000425416		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-5UTR	ENST00000576135	ENST00000256720		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000576135	ENST00000396097		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000576135	ENST00000404113		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000576135	ENST00000464517		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
intron-intron	ENST00000576135	ENST00000396098		ChiTaRS3.1			DA403287	ARL16	chr17	79650564	-	LPIN1	chr2	11905658	+
5CDS-intron	ENST00000321153	ENST00000419277		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000428995		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000463066		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000443117		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000551196		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000480521		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000415247		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000484255		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000454805		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000549300		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000475500		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000374808		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000552158		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000488565		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000383224		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000551933		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000474244		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000422504		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000550806		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000494775		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-3UTR	ENST00000321153	ENST00000515317		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-3UTR	ENST00000321153	ENST00000550456		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000321153	ENST00000502285		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000419277		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000428995		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000463066		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000443117		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000551196		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000480521		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000415247		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000484255		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000454805		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000549300		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000475500		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000374808		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000552158		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000488565		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000383224		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000551933		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000474244		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000422504		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000550806		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000494775		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-3UTR	ENST00000532004	ENST00000515317		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-3UTR	ENST00000532004	ENST00000550456		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
3UTR-intron	ENST00000532004	ENST00000502285		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000419277		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000428995		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000463066		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000443117		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000551196		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000480521		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000415247		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000484255		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000454805		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000549300		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000475500		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000374808		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000552158		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000488565		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000383224		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000551933		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000474244		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000422504		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000550806		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000494775		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-3UTR	ENST00000530797	ENST00000515317		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-3UTR	ENST00000530797	ENST00000550456		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
5CDS-intron	ENST00000530797	ENST00000502285		ChiTaRS3.1			BQ027739	RPLP2	chr11	812551	-	HLA-DPA1	chr6	4513349	-
intron-3CDS	ENST00000321560	ENST00000171887		ChiTaRS3.1			BF732578	PLD6	chr17	17109632	+	TNS1	chr2	218682697	-
intron-3CDS	ENST00000321560	ENST00000419504		ChiTaRS3.1			BF732578	PLD6	chr17	17109632	+	TNS1	chr2	218682697	-
intron-3CDS	ENST00000321560	ENST00000430930		ChiTaRS3.1			BF732578	PLD6	chr17	17109632	+	TNS1	chr2	218682697	-
intron-intron	ENST00000321560	ENST00000310858		ChiTaRS3.1			BF732578	PLD6	chr17	17109632	+	TNS1	chr2	218682697	-
intron-intron	ENST00000321560	ENST00000480665		ChiTaRS3.1			BF732578	PLD6	chr17	17109632	+	TNS1	chr2	218682697	-
5CDS-intron	ENST00000311672	ENST00000392587		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
5CDS-5UTR	ENST00000311672	ENST00000392586		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
5CDS-5UTR	ENST00000311672	ENST00000392588		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
5CDS-5UTR	ENST00000311672	ENST00000392589		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
5CDS-5UTR	ENST00000311672	ENST00000359451		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
intron-intron	ENST00000486951	ENST00000392587		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
intron-5UTR	ENST00000486951	ENST00000392586		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
intron-5UTR	ENST00000486951	ENST00000392588		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
intron-5UTR	ENST00000486951	ENST00000392589		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
intron-5UTR	ENST00000486951	ENST00000359451		ChiTaRS3.1			DA168843	UQCRH	chr1	46775925	+	WASF1	chr6	110501082	-
Frame-shit	ENST00000254950	ENST00000254950		ChiTaRS3.1			BQ334182	VPS4A	chr16	69353383	-	VPS4A	chr16	69353425	+
5CDS-intron	ENST00000254950	ENST00000564399		ChiTaRS3.1			BQ334182	VPS4A	chr16	69353383	-	VPS4A	chr16	69353425	+
intron-3CDS	ENST00000564399	ENST00000254950		ChiTaRS3.1			BQ334182	VPS4A	chr16	69353383	-	VPS4A	chr16	69353425	+
intron-intron	ENST00000564399	ENST00000564399		ChiTaRS3.1			BQ334182	VPS4A	chr16	69353383	-	VPS4A	chr16	69353425	+
intron-intron	ENST00000265351	ENST00000242719		ChiTaRS3.1			BC040830	XPO5	chr6	43506758	+	RNF11	chr1	51716308	-
intron-intron	ENST00000265351	ENST00000494873		ChiTaRS3.1			BC040830	XPO5	chr6	43506758	+	RNF11	chr1	51716308	-
intron-intron	ENST00000424378	ENST00000242719		ChiTaRS3.1			BC040830	XPO5	chr6	43506758	+	RNF11	chr1	51716308	-
intron-intron	ENST00000424378	ENST00000494873		ChiTaRS3.1			BC040830	XPO5	chr6	43506758	+	RNF11	chr1	51716308	-
3UTR-3UTR	ENST00000517503	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000517503	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000517503	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000517503	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000517503	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000517503	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000292494	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000292494	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000292494	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000292494	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000292494	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000429120	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000429120	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000429120	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000429120	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000429120	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521699	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521699	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521699	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521699	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521699	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000520531	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000520531	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000520531	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000520531	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000520531	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000520466	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000520466	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000520466	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000520466	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000520466	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521003	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521003	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521003	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000521003	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000521003	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000522528	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000522528	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000522528	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000522528	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000522528	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522971	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522971	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522971	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522971	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522971	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519611	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519611	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519611	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519611	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519611	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000521182	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000521182	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000521182	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000521182	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000521182	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519546	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519546	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519546	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-3UTR	ENST00000519546	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
3UTR-intron	ENST00000519546	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000523847	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000523847	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000523847	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000523847	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000523847	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522024	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522024	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522024	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-3UTR	ENST00000522024	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
5CDS-intron	ENST00000522024	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000517503		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000292494		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000429120		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000521699		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000519615	ENST00000520531		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000520466		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000521003		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000522528		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000522971		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000519615	ENST00000519611		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000521182		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000519546		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000519615	ENST00000523847		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3UTR	ENST00000519615	ENST00000522024		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-intron	ENST00000519615	ENST00000519615		ChiTaRS3.1			BE076118	LY6E	chr8	144103096	+	LY6E	chr8	144103239	-
intron-3CDS	ENST00000390548	ENST00000301764		ChiTaRS3.1			BI060051	IGHG1	chr14	106208368	-	DDB1	chr11	61096907	-
intron-intron	ENST00000390548	ENST00000450997		ChiTaRS3.1			BI060051	IGHG1	chr14	106208368	-	DDB1	chr11	61096907	-
intron-intron	ENST00000390548	ENST00000451943		ChiTaRS3.1			BI060051	IGHG1	chr14	106208368	-	DDB1	chr11	61096907	-
intron-intron	ENST00000390548	ENST00000538470		ChiTaRS3.1			BI060051	IGHG1	chr14	106208368	-	DDB1	chr11	61096907	-
intron-intron	ENST00000390548	ENST00000545930		ChiTaRS3.1			BI060051	IGHG1	chr14	106208368	-	DDB1	chr11	61096907	-
In-frame	ENST00000566983	ENST00000447866		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000566983	ENST00000368356		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000566983	ENST00000487002		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000566983	ENST00000356657		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000268261	ENST00000447866		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000268261	ENST00000368356		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000268261	ENST00000487002		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000268261	ENST00000356657		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000539622	ENST00000447866		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000539622	ENST00000368356		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000539622	ENST00000487002		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000539622	ENST00000356657		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000537352	ENST00000447866		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000537352	ENST00000368356		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000537352	ENST00000487002		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000537352	ENST00000356657		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000569958	ENST00000447866		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000569958	ENST00000368356		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000569958	ENST00000487002		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000569958	ENST00000356657		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000565837	ENST00000447866		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000565837	ENST00000368356		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-intron	ENST00000565837	ENST00000487002		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-intron	ENST00000565837	ENST00000356657		ChiTaRS3.1			BG491331	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000476233	ENST00000225402		ChiTaRS3.1			BF800892	HNRNPA2B1	chr7	26236477	-	AATF	chr17	35310229	+
intron-intron	ENST00000476233	ENST00000590321		ChiTaRS3.1			BF800892	HNRNPA2B1	chr7	26236477	-	AATF	chr17	35310229	+
intron-3CDS	ENST00000354667	ENST00000225402		ChiTaRS3.1			BF800892	HNRNPA2B1	chr7	26236477	-	AATF	chr17	35310229	+
intron-intron	ENST00000354667	ENST00000590321		ChiTaRS3.1			BF800892	HNRNPA2B1	chr7	26236477	-	AATF	chr17	35310229	+
intron-3CDS	ENST00000356674	ENST00000225402		ChiTaRS3.1			BF800892	HNRNPA2B1	chr7	26236477	-	AATF	chr17	35310229	+
intron-intron	ENST00000356674	ENST00000590321		ChiTaRS3.1			BF800892	HNRNPA2B1	chr7	26236477	-	AATF	chr17	35310229	+
intron-3UTR	ENST00000418539	ENST00000353442		ChiTaRS3.1			BE161420	BCYRN1	chrX	70516825	-	LMBR1	chr7	156474010	-
intron-intron	ENST00000418539	ENST00000359422		ChiTaRS3.1			BE161420	BCYRN1	chrX	70516825	-	LMBR1	chr7	156474010	-
intron-intron	ENST00000418539	ENST00000354505		ChiTaRS3.1			BE161420	BCYRN1	chrX	70516825	-	LMBR1	chr7	156474010	-
intron-intron	ENST00000418539	ENST00000540390		ChiTaRS3.1			BE161420	BCYRN1	chrX	70516825	-	LMBR1	chr7	156474010	-
intron-intron	ENST00000418539	ENST00000430825		ChiTaRS3.1			BE161420	BCYRN1	chrX	70516825	-	LMBR1	chr7	156474010	-
intron-3UTR	ENST00000516892	ENST00000344034		ChiTaRS3.1			BG015191	MEG3	chr14	101301719	-	PPM1G	chr2	27604463	+
intron-3UTR	ENST00000516892	ENST00000350803		ChiTaRS3.1			BG015191	MEG3	chr14	101301719	-	PPM1G	chr2	27604463	+
In-frame	ENST00000522706	ENST00000522706		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
In-frame	ENST00000522706	ENST00000262109		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
5CDS-5UTR	ENST00000522706	ENST00000518277		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
In-frame	ENST00000262109	ENST00000522706		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
In-frame	ENST00000262109	ENST00000262109		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
5CDS-5UTR	ENST00000262109	ENST00000518277		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-3CDS	ENST00000518277	ENST00000522706		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-3CDS	ENST00000518277	ENST00000262109		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-5UTR	ENST00000518277	ENST00000518277		ChiTaRS3.1			BC016017	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
5CDS-3UTR	ENST00000393078	ENST00000393078		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000393078	ENST00000485588		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000393080		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000467132		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000482740		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000393078		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-intron	ENST00000485588	ENST00000485588		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000393080		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000467132		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000482740		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000393078		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000393080	ENST00000485588		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000393080		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000467132		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000482740		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000393078		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000467132	ENST00000485588		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000393080		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000467132		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000482740		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000393078		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000482740	ENST00000485588		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000393080		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000467132		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000482740		ChiTaRS3.1			BE813446	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5UTR-3UTR	ENST00000469185	ENST00000332556		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000469185	ENST00000397181		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000469185	ENST00000471046		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-3UTR	ENST00000312541	ENST00000332556		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000312541	ENST00000397181		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000312541	ENST00000471046		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-3UTR	ENST00000541522	ENST00000332556		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000541522	ENST00000397181		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000541522	ENST00000471046		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-3UTR	ENST00000429381	ENST00000332556		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000429381	ENST00000397181		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
5UTR-intron	ENST00000429381	ENST00000471046		ChiTaRS3.1			DW446667	BTN2A1	chr6	26458241	+	LAMP1	chr13	113977580	+
intron-intron	ENST00000301067	ENST00000419277		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000428995		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000463066		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000443117		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000551196		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000480521		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000415247		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000484255		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000454805		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000549300		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000475500		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000374808		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000552158		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000488565		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000383224		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000551933		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000474244		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000422504		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000550806		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000494775		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000515317		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000550456		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000502285		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000419277		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000428995		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000463066		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000443117		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000551196		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000480521		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000415247		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000484255		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000454805		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000549300		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000475500		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000374808		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000552158		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000488565		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000383224		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000551933		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000474244		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000422504		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000550806		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000494775		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000515317		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000550456		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000502285		ChiTaRS3.1			BF931405	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
5UTR-3CDS	ENST00000361383	ENST00000361383		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3CDS	ENST00000361383	ENST00000405275		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3CDS	ENST00000361383	ENST00000373473		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3UTR	ENST00000361383	ENST00000473857		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3UTR	ENST00000361383	ENST00000373469		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3CDS	ENST00000405275	ENST00000361383		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3CDS	ENST00000405275	ENST00000405275		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3CDS	ENST00000405275	ENST00000373473		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3UTR	ENST00000405275	ENST00000473857		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
5UTR-3UTR	ENST00000405275	ENST00000373469		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000373473	ENST00000361383		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000373473	ENST00000405275		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000373473	ENST00000373473		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3UTR	ENST00000373473	ENST00000473857		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3UTR	ENST00000373473	ENST00000373469		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000473857	ENST00000361383		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000473857	ENST00000405275		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000473857	ENST00000373473		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3UTR	ENST00000473857	ENST00000473857		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3UTR	ENST00000473857	ENST00000373469		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000373469	ENST00000361383		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000373469	ENST00000405275		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000373469	ENST00000373473		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3UTR	ENST00000373469	ENST00000473857		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3UTR	ENST00000373469	ENST00000373469		ChiTaRS3.1			AI694582	CTNNBL1	chr20	36322478	-	CTNNBL1	chr20	36488413	+
intron-3CDS	ENST00000314100	ENST00000253408		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000314100	ENST00000588735		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000314100	ENST00000435360		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000314100	ENST00000586793		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-5UTR	ENST00000314100	ENST00000591327		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-3CDS	ENST00000481247	ENST00000253408		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000481247	ENST00000588735		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000481247	ENST00000435360		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000481247	ENST00000586793		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-5UTR	ENST00000481247	ENST00000591327		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-3CDS	ENST00000419706	ENST00000253408		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000419706	ENST00000588735		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000419706	ENST00000435360		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000419706	ENST00000586793		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-5UTR	ENST00000419706	ENST00000591327		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-3CDS	ENST00000408958	ENST00000253408		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000408958	ENST00000588735		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000408958	ENST00000435360		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000408958	ENST00000586793		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-5UTR	ENST00000408958	ENST00000591327		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-3CDS	ENST00000403056	ENST00000253408		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000403056	ENST00000588735		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000403056	ENST00000435360		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-intron	ENST00000403056	ENST00000586793		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
intron-5UTR	ENST00000403056	ENST00000591327		ChiTaRS3.1			BQ343441	BTBD9	chr6	38583002	+	GFAP	chr17	42992561	+
5CDS-intron	ENST00000215730	ENST00000215730		ChiTaRS3.1			AW391811	SNAP29	chr22	21224683	-	SNAP29	chr22	21237854	-
5CDS-intron	ENST00000368533	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368533	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368533	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5UTR-intron	ENST00000469717	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5UTR-intron	ENST00000469717	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5UTR-intron	ENST00000469717	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000330188	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000330188	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000330188	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000341485	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000341485	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000341485	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000341372	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000341372	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000341372	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000328159	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000328159	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000328159	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000271850	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000271850	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000271850	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000302206	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000302206	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000302206	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368531	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368531	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368531	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000323144	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000323144	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000323144	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368530	ENST00000389048		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368530	ENST00000431873		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
5CDS-intron	ENST00000368530	ENST00000498037		ChiTaRS3.1			AF362886	TPM3	chr1	154142876	-	ALK	chr2	29446402	-
In-frame	ENST00000395184	ENST00000504592		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000395184	ENST00000322953		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000395184	ENST00000428908		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000395184	ENST00000508653		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000395184	ENST00000444316		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
5CDS-3UTR	ENST00000395184	ENST00000510950		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000503995	ENST00000504592		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000503995	ENST00000322953		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000503995	ENST00000428908		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000503995	ENST00000508653		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
In-frame	ENST00000503995	ENST00000444316		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
5CDS-3UTR	ENST00000503995	ENST00000510950		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
3UTR-3CDS	ENST00000506421	ENST00000504592		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
3UTR-3CDS	ENST00000506421	ENST00000322953		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
3UTR-3CDS	ENST00000506421	ENST00000428908		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
3UTR-3CDS	ENST00000506421	ENST00000508653		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
3UTR-3CDS	ENST00000506421	ENST00000444316		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
3UTR-3UTR	ENST00000506421	ENST00000510950		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000395183	ENST00000504592		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000395183	ENST00000322953		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000395183	ENST00000428908		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000395183	ENST00000508653		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000395183	ENST00000444316		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3UTR	ENST00000395183	ENST00000510950		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000264343	ENST00000504592		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000264343	ENST00000322953		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000264343	ENST00000428908		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000264343	ENST00000508653		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3CDS	ENST00000264343	ENST00000444316		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3UTR	ENST00000264343	ENST00000510950		ChiTaRS3.1			DA819158	ARHGAP24	chr4	86491874	+	BANK1	chr4	102942670	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835134	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000326639	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000326639	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000264584	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000441387	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000354456	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000506199	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000512292	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000394288	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000432347	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000326639		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000264584		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000441387		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000354456		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000506199		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000512292		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000394288		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000432347		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000427266	ENST00000427266		ChiTaRS3.1			EB362731	LARP1B	chr4	128995615	-	LARP1B	chr4	129003460	-
intron-intron	ENST00000392951	ENST00000607874		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
intron-intron	ENST00000392951	ENST00000218147		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
intron-intron	ENST00000392951	ENST00000359304		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
intron-intron	ENST00000392951	ENST00000303743		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
intron-intron	ENST00000392951	ENST00000540052		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000530649	ENST00000607874		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000530649	ENST00000218147		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000530649	ENST00000359304		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000530649	ENST00000303743		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000530649	ENST00000540052		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000532870	ENST00000607874		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000532870	ENST00000218147		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000532870	ENST00000359304		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000532870	ENST00000303743		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
3UTR-intron	ENST00000532870	ENST00000540052		ChiTaRS3.1			AI087196	TAGLN	chr11	117075433	-	BCORL1	chrX	129147437	-
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000446906		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000377072		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000307729		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000377059		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AF272384	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3UTR	ENST00000400098	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000400098	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000400100	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000400100	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000400097	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000400097	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000553597	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000553597	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000390687	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000390687	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000346403	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000346403	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000554227	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000554227	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000577565	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000577565	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3UTR	ENST00000444203	ENST00000326764		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-intron	ENST00000444203	ENST00000376514		ChiTaRS3.1			BI034781	SNRPN	chr15	25425043	+	LENG8	chr19	54972911	-
intron-3CDS	ENST00000378330	ENST00000340645		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000378330	ENST00000393667		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-intron	ENST00000378330	ENST00000472829		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000301030	ENST00000340645		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000301030	ENST00000393667		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-intron	ENST00000301030	ENST00000472829		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000563291	ENST00000340645		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000563291	ENST00000393667		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-intron	ENST00000563291	ENST00000472829		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000567736	ENST00000340645		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-3CDS	ENST00000567736	ENST00000393667		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
intron-intron	ENST00000567736	ENST00000472829		ChiTaRS3.1			BF822728	ANKRD11	chr16	89347872	-	GOLGB1	chr3	121395874	-
In-frame	ENST00000370056	ENST00000369426		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000370056	ENST00000235521		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000370056	ENST00000537870		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
5CDS-intron	ENST00000370056	ENST00000497761		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000527011	ENST00000369426		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000527011	ENST00000235521		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000527011	ENST00000537870		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
5CDS-intron	ENST00000527011	ENST00000497761		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000544443	ENST00000369426		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000544443	ENST00000235521		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000544443	ENST00000537870		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-intron	ENST00000544443	ENST00000497761		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000415432	ENST00000369426		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000415432	ENST00000235521		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000415432	ENST00000537870		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-intron	ENST00000415432	ENST00000497761		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000343258	ENST00000369426		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000343258	ENST00000235521		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-3CDS	ENST00000343258	ENST00000537870		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-intron	ENST00000343258	ENST00000497761		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000371846	ENST00000369426		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000371846	ENST00000235521		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
In-frame	ENST00000371846	ENST00000537870		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
5CDS-intron	ENST00000371846	ENST00000497761		ChiTaRS3.1			AI672033	VAV3	chr1	108417521	-	WARS2	chr1	119588287	-
intron-5UTR	ENST00000297185	ENST00000221169		ChiTaRS3.1			DA499861	HSPA9	chr5	137896734	-	NEFL	chr8	24814131	-
intron-5UTR	ENST00000501917	ENST00000221169		ChiTaRS3.1			DA499861	HSPA9	chr5	137896734	-	NEFL	chr8	24814131	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			BQ349979	EEF2	chr19	3980548	+	EEF2	chr19	3985461	-
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			BQ349979	EEF2	chr19	3980548	+	EEF2	chr19	3985461	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			BQ349979	EEF2	chr19	3980548	+	EEF2	chr19	3985461	-
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			BQ349979	EEF2	chr19	3980548	+	EEF2	chr19	3985461	-
5CDS-3UTR	ENST00000366767	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366767	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366767	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-3UTR	ENST00000366769	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366769	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366769	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-3UTR	ENST00000366764	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366764	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366764	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-3UTR	ENST00000334218	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000334218	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000334218	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-3UTR	ENST00000366766	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366766	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366766	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-3UTR	ENST00000535525	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000535525	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000535525	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-3UTR	ENST00000366765	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366765	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
5CDS-intron	ENST00000366765	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
intron-3UTR	ENST00000488131	ENST00000348628		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
intron-intron	ENST00000488131	ENST00000351010		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
intron-intron	ENST00000488131	ENST00000398376		ChiTaRS3.1			AK098391	CDC42BPA	chr1	227210967	-	CAMK2A	chr5	149599124	-
intron-3UTR	ENST00000262940	ENST00000431992		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000373422		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000257118		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000419414		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000262940	ENST00000373416		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000262940	ENST00000485928		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000373418		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000431992		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000373422		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000257118		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000419414		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000461209	ENST00000373416		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000461209	ENST00000485928		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000373418		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000431992		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000373422		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000257118		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000419414		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000449970	ENST00000373416		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000449970	ENST00000485928		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000373418		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000431992		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000373422		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000257118		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000419414		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000462172	ENST00000373416		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000462172	ENST00000485928		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000373418		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000431992		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000373422		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000257118		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000419414		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000521822	ENST00000373416		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000521822	ENST00000485928		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000373418		ChiTaRS3.1			BF857605	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000367935	ENST00000445403		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
intron-intron	ENST00000367935	ENST00000373578		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
intron-intron	ENST00000367935	ENST00000360723		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
intron-intron	ENST00000367935	ENST00000358208		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
intron-intron	ENST00000367935	ENST00000373567		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
intron-intron	ENST00000367935	ENST00000373558		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
intron-intron	ENST00000367935	ENST00000477066		ChiTaRS3.1			BF515508	C1orf111	chr1	162345154	+	SRC	chr20	35976957	+
5UTR-5UTR	ENST00000354618	ENST00000332776		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000354618	ENST00000574788		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000354618	ENST00000304328		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000354618	ENST00000250066		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-intron	ENST00000354618	ENST00000572429		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000469141	ENST00000332776		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000469141	ENST00000574788		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000469141	ENST00000304328		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000469141	ENST00000250066		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
5UTR-intron	ENST00000469141	ENST00000572429		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
intron-5UTR	ENST00000466743	ENST00000332776		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
intron-5UTR	ENST00000466743	ENST00000574788		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
intron-5UTR	ENST00000466743	ENST00000304328		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
intron-5UTR	ENST00000466743	ENST00000250066		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
intron-intron	ENST00000466743	ENST00000572429		ChiTaRS3.1			AY624559	THRAP3	chr1	36690107	+	USP6	chr17	5033229	+
Frame-shit	ENST00000417037	ENST00000360772		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000417037	ENST00000359169		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000417037	ENST00000360304		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000418370		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000578202		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000354792		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000346322		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000583087		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000475616		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000510775		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000396334	ENST00000360772		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000396334	ENST00000359169		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000396334	ENST00000360304		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000418370		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000578202		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000354792		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000346322		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000583087		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000475616		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000510775		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000424893	ENST00000360772		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000424893	ENST00000359169		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000424893	ENST00000360304		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000418370		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000578202		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000354792		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000346322		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000583087		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000475616		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000510775		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000495303	ENST00000360772		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000495303	ENST00000359169		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000495303	ENST00000360304		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000418370		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000578202		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000354792		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000346322		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000583087		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000475616		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000510775		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000443433	ENST00000360772		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000443433	ENST00000359169		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000443433	ENST00000360304		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000418370		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000578202		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000354792		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000346322		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000583087		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000475616		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000510775		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-3CDS	ENST00000481122	ENST00000360772		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-3CDS	ENST00000481122	ENST00000359169		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-3CDS	ENST00000481122	ENST00000360304		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000418370		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000578202		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000354792		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000346322		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000583087		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000475616		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000510775		ChiTaRS3.1			BP285827	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			DQ083944	IGHG1	chr14	106213662	-	IGHG1	chr14	106322325	-
3UTR-3UTR	ENST00000370283	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370283	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370283	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000547204	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000547204	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519604	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519604	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519273	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519273	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370275	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370275	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000353546	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000353546	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000370283		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000518794	ENST00000547204		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000518794	ENST00000519604		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000519273		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000370275		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000353546		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000518794		ChiTaRS3.1			BF435836	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
5CDS-intron	ENST00000309859	ENST00000370656		ChiTaRS3.1			AA255952	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000309859	ENST00000370654		ChiTaRS3.1			AA255952	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000567468	ENST00000370656		ChiTaRS3.1			AA255952	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000567468	ENST00000370654		ChiTaRS3.1			AA255952	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-intron	ENST00000569182	ENST00000370656		ChiTaRS3.1			AA255952	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-intron	ENST00000569182	ENST00000370654		ChiTaRS3.1			AA255952	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
Frame-shit	ENST00000300935	ENST00000369066		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
5CDS-intron	ENST00000300935	ENST00000535438		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
5CDS-intron	ENST00000300935	ENST00000487681		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
intron-3CDS	ENST00000588105	ENST00000369066		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
intron-intron	ENST00000588105	ENST00000535438		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
intron-intron	ENST00000588105	ENST00000487681		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
Frame-shit	ENST00000586682	ENST00000369066		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
5CDS-intron	ENST00000586682	ENST00000535438		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
5CDS-intron	ENST00000586682	ENST00000487681		ChiTaRS3.1			BI029234	RAB8A	chr19	16240395	+	AIM1	chr6	106967227	+
intron-5UTR	ENST00000382491	ENST00000382491		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000382491	ENST00000357345		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382491	ENST00000382499		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382491	ENST00000433931		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382491	ENST00000322229		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382491	ENST00000464778		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000357345	ENST00000382491		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000357345	ENST00000357345		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000357345	ENST00000382499		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000357345	ENST00000433931		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000357345	ENST00000322229		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000357345	ENST00000464778		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000382499	ENST00000382491		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000382499	ENST00000357345		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382499	ENST00000382499		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382499	ENST00000433931		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382499	ENST00000322229		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000382499	ENST00000464778		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000433931	ENST00000382491		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000433931	ENST00000357345		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000433931	ENST00000382499		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000433931	ENST00000433931		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000433931	ENST00000322229		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000433931	ENST00000464778		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000322229	ENST00000382491		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000322229	ENST00000357345		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000322229	ENST00000382499		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000322229	ENST00000433931		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000322229	ENST00000322229		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000322229	ENST00000464778		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000464778	ENST00000382491		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-5UTR	ENST00000464778	ENST00000357345		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000464778	ENST00000382499		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000464778	ENST00000433931		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000464778	ENST00000322229		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
intron-intron	ENST00000464778	ENST00000464778		ChiTaRS3.1			BP366199	SYNJ1	chr21	34018744	-	SYNJ1	chr21	34100186	-
3UTR-3CDS	ENST00000534336	ENST00000271640		ChiTaRS3.1			BF992583	MALAT1	chr11	65267932	-	SETDB1	chr1	150900286	-
3UTR-3CDS	ENST00000534336	ENST00000368962		ChiTaRS3.1			BF992583	MALAT1	chr11	65267932	-	SETDB1	chr1	150900286	-
3UTR-3CDS	ENST00000534336	ENST00000368969		ChiTaRS3.1			BF992583	MALAT1	chr11	65267932	-	SETDB1	chr1	150900286	-
3UTR-3CDS	ENST00000534336	ENST00000368963		ChiTaRS3.1			BF992583	MALAT1	chr11	65267932	-	SETDB1	chr1	150900286	-
3UTR-3UTR	ENST00000534336	ENST00000459773		ChiTaRS3.1			BF992583	MALAT1	chr11	65267932	-	SETDB1	chr1	150900286	-
3UTR-intron	ENST00000533141	ENST00000217159		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000533141	ENST00000370507		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000533141	ENST00000470412		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000399817	ENST00000217159		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000399817	ENST00000370507		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000399817	ENST00000470412		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000602569	ENST00000217159		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000602569	ENST00000370507		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
3UTR-intron	ENST00000602569	ENST00000470412		ChiTaRS3.1			BF853432	IFITM2	chr11	309211	+	SLCO4A1	chr20	61280954	+
intron-intron	ENST00000311713	ENST00000464395		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000311713	ENST00000224949		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000311713	ENST00000380989		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000311713	ENST00000380994		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000311713	ENST00000451104		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000278856	ENST00000464395		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000278856	ENST00000224949		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000278856	ENST00000380989		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000278856	ENST00000380994		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000278856	ENST00000451104		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000529106	ENST00000464395		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000529106	ENST00000224949		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000529106	ENST00000380989		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000529106	ENST00000380994		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000529106	ENST00000451104		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000525239	ENST00000464395		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000525239	ENST00000224949		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000525239	ENST00000380989		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000525239	ENST00000380994		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000525239	ENST00000451104		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000525752	ENST00000464395		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000525752	ENST00000224949		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000525752	ENST00000380989		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000525752	ENST00000380994		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000525752	ENST00000451104		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000540620	ENST00000464395		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000540620	ENST00000224949		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-5UTR	ENST00000540620	ENST00000380989		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000540620	ENST00000380994		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000540620	ENST00000451104		ChiTaRS3.1			DA387263	WDR74	chr11	62609095	-	PITRM1	chr10	3214974	-
intron-intron	ENST00000308724	ENST00000376861		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000334668		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000259951		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000440587		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000434407		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000475996		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000342322		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000552082		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000551026		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000383516		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000383515		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000496199		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000422711		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000551832		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000549067		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000428296		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000420067		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000485297		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000422439		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000490874		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000383626		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000550932		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000547132		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000383627		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000359076		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000489167		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000435058		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000551780		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000551347		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000445657		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000440590		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000490259		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000444891		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000549422		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000552880		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000549254		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000430472		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000376848		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000308724	ENST00000463731		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000376861		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000334668		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000259951		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000440587		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000434407		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000475996		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000342322		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000552082		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000551026		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000383516		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000383515		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000496199		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000422711		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000551832		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000549067		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000428296		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000420067		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000485297		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000422439		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000490874		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000383626		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000550932		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000547132		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000383627		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000359076		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000489167		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000435058		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000551780		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000551347		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000445657		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000440590		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000490259		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000444891		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000549422		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000552880		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000549254		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000430472		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000376848		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000397120	ENST00000463731		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000376861		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000334668		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000259951		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000440587		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000434407		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000475996		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000342322		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000552082		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000551026		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000383516		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000383515		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000496199		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000422711		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000551832		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000549067		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000428296		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000420067		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000485297		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000422439		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000490874		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000383626		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000550932		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000547132		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000383627		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000359076		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000489167		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000435058		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000551780		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000551347		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000445657		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000440590		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000490259		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000444891		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000549422		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000552880		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000549254		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000430472		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000376848		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
intron-intron	ENST00000556277	ENST00000463731		ChiTaRS3.1			BF917628	AP1G2	chr14	24030630	+	HLA-F	chr6	1029924	+
3UTR-3CDS	ENST00000392951	ENST00000392951		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000392951	ENST00000530649		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000392951	ENST00000532870		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000530649	ENST00000392951		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000530649	ENST00000530649		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000530649	ENST00000532870		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000532870	ENST00000392951		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000532870	ENST00000530649		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
3UTR-3CDS	ENST00000532870	ENST00000532870		ChiTaRS3.1			BG953256	TAGLN	chr11	117075240	+	TAGLN	chr11	117073841	+
intron-intron	ENST00000460736	ENST00000460736		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
intron-3UTR	ENST00000460736	ENST00000379619		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
intron-3UTR	ENST00000460736	ENST00000264716		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
intron-intron	ENST00000460736	ENST00000545753		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-intron	ENST00000379619	ENST00000460736		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-3UTR	ENST00000379619	ENST00000379619		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-3UTR	ENST00000379619	ENST00000264716		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-intron	ENST00000379619	ENST00000545753		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-intron	ENST00000264716	ENST00000460736		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-3UTR	ENST00000264716	ENST00000379619		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-3UTR	ENST00000264716	ENST00000264716		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-intron	ENST00000264716	ENST00000545753		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-intron	ENST00000545753	ENST00000460736		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-3UTR	ENST00000545753	ENST00000379619		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-3UTR	ENST00000545753	ENST00000264716		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
5CDS-intron	ENST00000545753	ENST00000545753		ChiTaRS3.1			BF847663	FOSL2	chr2	28635010	-	FOSL2	chr2	28635665	-
intron-3CDS	ENST00000321949	ENST00000332050		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000321949	ENST00000397938		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000321949	ENST00000406548		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000321949	ENST00000331029		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000321949	ENST00000414183		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000321949	ENST00000333395		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000321949	ENST00000332035		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000338797	ENST00000332050		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000338797	ENST00000397938		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000338797	ENST00000406548		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000338797	ENST00000331029		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000338797	ENST00000414183		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000338797	ENST00000333395		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000338797	ENST00000332035		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000594658	ENST00000332050		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000594658	ENST00000397938		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000594658	ENST00000406548		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000594658	ENST00000331029		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000594658	ENST00000414183		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000594658	ENST00000333395		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000594658	ENST00000332035		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000601916	ENST00000332050		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000601916	ENST00000397938		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000601916	ENST00000406548		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000601916	ENST00000331029		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-3CDS	ENST00000601916	ENST00000414183		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000601916	ENST00000333395		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
intron-intron	ENST00000601916	ENST00000332035		ChiTaRS3.1			AW803220	CRTC1	chr19	18880481	+	EWSR1	chr22	29695762	+
In-frame	ENST00000157600	ENST00000342287		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000157600	ENST00000373487		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000157600	ENST00000373489		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000157600	ENST00000373483		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000157600	ENST00000447726		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-3UTR	ENST00000157600	ENST00000538998		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000535732	ENST00000342287		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000535732	ENST00000373487		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000535732	ENST00000373489		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000535732	ENST00000373483		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000535732	ENST00000447726		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-3UTR	ENST00000535732	ENST00000538998		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000454244	ENST00000342287		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000454244	ENST00000373487		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000454244	ENST00000373489		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000454244	ENST00000373483		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000454244	ENST00000447726		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3UTR	ENST00000454244	ENST00000538998		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000397386	ENST00000342287		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000397386	ENST00000373487		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000397386	ENST00000373489		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000397386	ENST00000373483		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000397386	ENST00000447726		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3UTR	ENST00000397386	ENST00000538998		ChiTaRS3.1			DA020849	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
3UTR-intron	ENST00000313949	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000313949	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000313949	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000313949	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000313949	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371098	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371098	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371098	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371098	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371098	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000371075	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000371075	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000371075	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000371075	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000371075	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371100	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371100	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371100	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371100	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371100	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371099	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371099	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371099	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371099	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371099	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371102	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371102	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371102	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371102	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371102	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000464624	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000464624	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000464624	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000464624	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
3UTR-intron	ENST00000464624	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000306120	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000306120	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000306120	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000306120	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000306120	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371095	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371095	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371095	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371095	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371095	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371085	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371085	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371085	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371085	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000371085	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000354359	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000354359	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000354359	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000354359	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000354359	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000265620	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000265620	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000265620	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000265620	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000265620	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000306090	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000306090	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000306090	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000306090	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
5CDS-intron	ENST00000306090	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371081	ENST00000476844		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371081	ENST00000492590		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371081	ENST00000466788		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371081	ENST00000468189		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
intron-intron	ENST00000371081	ENST00000341848		ChiTaRS3.1			BP430864	GNAS	chr20	57484792	+	FHIT	chr3	59784450	-
Frame-shit	ENST00000525445	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5CDS-intron	ENST00000525445	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
Frame-shit	ENST00000348655	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5CDS-intron	ENST00000348655	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
Frame-shit	ENST00000397566	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5CDS-intron	ENST00000397566	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
In-frame	ENST00000397570	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5CDS-intron	ENST00000397570	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
In-frame	ENST00000397574	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5CDS-intron	ENST00000397574	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5UTR-3CDS	ENST00000397562	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5UTR-intron	ENST00000397562	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
In-frame	ENST00000330243	ENST00000257347		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5CDS-intron	ENST00000330243	ENST00000535398		ChiTaRS3.1			BE843753	IRF7	chr11	614478	-	CARS2	chr13	111293936	-
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DC369559	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
In-frame	ENST00000244230	ENST00000244230		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
In-frame	ENST00000244230	ENST00000498451		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
5CDS-intron	ENST00000244230	ENST00000468427		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
intron-3CDS	ENST00000498451	ENST00000244230		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
intron-3CDS	ENST00000498451	ENST00000498451		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
intron-intron	ENST00000498451	ENST00000468427		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
intron-3CDS	ENST00000468427	ENST00000244230		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
intron-3CDS	ENST00000468427	ENST00000498451		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
intron-intron	ENST00000468427	ENST00000468427		ChiTaRS3.1			BU608709	MPHOSPH10	chr2	71375212	-	MPHOSPH10	chr2	71365726	+
3UTR-3CDS	ENST00000301738	ENST00000533211		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
3UTR-3CDS	ENST00000301738	ENST00000309996		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
3UTR-3CDS	ENST00000301738	ENST00000529997		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
intron-3CDS	ENST00000564195	ENST00000533211		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
intron-3CDS	ENST00000564195	ENST00000309996		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
intron-3CDS	ENST00000564195	ENST00000529997		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
intron-3CDS	ENST00000569689	ENST00000533211		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
intron-3CDS	ENST00000569689	ENST00000309996		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
intron-3CDS	ENST00000569689	ENST00000529997		ChiTaRS3.1			BU739358	KCTD5	chr16	2758764	-	SPTBN2	chr11	66455482	+
5CDS-intron	ENST00000441003	ENST00000597933		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
5CDS-intron	ENST00000441003	ENST00000602122		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
5CDS-intron	ENST00000441003	ENST00000361790		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
5CDS-intron	ENST00000441003	ENST00000360798		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
5CDS-intron	ENST00000441003	ENST00000354900		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
5CDS-intron	ENST00000441003	ENST00000347609		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
5CDS-intron	ENST00000441003	ENST00000427250		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000597933		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000602122		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000361790		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000360798		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000354900		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000347609		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000359061	ENST00000427250		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000597933		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000602122		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000361790		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000360798		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000354900		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000347609		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-intron	ENST00000361558	ENST00000427250		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000597933		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000602122		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000361790		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000360798		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000354900		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000347609		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
intron-intron	ENST00000333592	ENST00000427250		ChiTaRS3.1			BG982813	MUC2	chr11	1098806	+	LSR	chr19	35740016	-
3UTR-3CDS	ENST00000301740	ENST00000301740		ChiTaRS3.1			BF876344	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
3UTR-3UTR	ENST00000301740	ENST00000574593		ChiTaRS3.1			BF876344	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BF876344	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
intron-3UTR	ENST00000574593	ENST00000574593		ChiTaRS3.1			BF876344	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
3UTR-intron	ENST00000479054	ENST00000605788		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000479054	ENST00000405356		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000479054	ENST00000603742		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000479054	ENST00000488254		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000479054	ENST00000477977		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000345716	ENST00000605788		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000345716	ENST00000405356		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000345716	ENST00000603742		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000345716	ENST00000488254		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
3UTR-intron	ENST00000345716	ENST00000477977		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000488380	ENST00000605788		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000488380	ENST00000405356		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000488380	ENST00000603742		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000488380	ENST00000488254		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000488380	ENST00000477977		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000420808	ENST00000605788		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000420808	ENST00000405356		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000420808	ENST00000603742		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000420808	ENST00000488254		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000420808	ENST00000477977		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000464280	ENST00000605788		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000464280	ENST00000405356		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000464280	ENST00000603742		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000464280	ENST00000488254		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
intron-intron	ENST00000464280	ENST00000477977		ChiTaRS3.1			AW071437	NISCH	chr3	52526791	-	NOLC1	chr10	103919781	-
5CDS-intron	ENST00000371964	ENST00000254508		ChiTaRS3.1			AW801070	SURF2	chr9	136226896	+	NUP210	chr3	13390287	-
5CDS-intron	ENST00000371964	ENST00000485755		ChiTaRS3.1			AW801070	SURF2	chr9	136226896	+	NUP210	chr3	13390287	-
3UTR-intron	ENST00000495524	ENST00000254508		ChiTaRS3.1			AW801070	SURF2	chr9	136226896	+	NUP210	chr3	13390287	-
3UTR-intron	ENST00000495524	ENST00000485755		ChiTaRS3.1			AW801070	SURF2	chr9	136226896	+	NUP210	chr3	13390287	-
In-frame	ENST00000306729	ENST00000315869		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
5CDS-5UTR	ENST00000306729	ENST00000487451		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
In-frame	ENST00000306739	ENST00000315869		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
5CDS-5UTR	ENST00000306739	ENST00000487451		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
In-frame	ENST00000580534	ENST00000315869		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
5CDS-5UTR	ENST00000580534	ENST00000487451		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
intron-3CDS	ENST00000581647	ENST00000315869		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
intron-5UTR	ENST00000581647	ENST00000487451		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
intron-3CDS	ENST00000582404	ENST00000315869		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
intron-5UTR	ENST00000582404	ENST00000487451		ChiTaRS3.1			AY034077	ASPSCR1	chr17	79954722	+	TFE3	chrX	48891767	-
intron-5UTR	ENST00000372842	ENST00000372842		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372842	ENST00000372838		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372842	ENST00000493788		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372842		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372838		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372838	ENST00000493788		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372842		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372838		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000493788	ENST00000493788		ChiTaRS3.1			BQ690789	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-3CDS	ENST00000555997	ENST00000544865		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000555997	ENST00000263073		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000555997	ENST00000354901		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000555997	ENST00000536871		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-5UTR	ENST00000555997	ENST00000573166		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000439696	ENST00000544865		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000439696	ENST00000263073		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000439696	ENST00000354901		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000439696	ENST00000536871		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-5UTR	ENST00000439696	ENST00000573166		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000336440	ENST00000544865		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000336440	ENST00000263073		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000336440	ENST00000354901		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000336440	ENST00000536871		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-5UTR	ENST00000336440	ENST00000573166		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000408913	ENST00000544865		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000408913	ENST00000263073		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000408913	ENST00000354901		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-3CDS	ENST00000408913	ENST00000536871		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-5UTR	ENST00000408913	ENST00000573166		ChiTaRS3.1			DA746032	ZFP36L1	chr14	69261956	+	SMG6	chr17	1972227	-
intron-intron	ENST00000419152	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000419152		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000532400		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000532741		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000317198		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000526838		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000442189		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000528610		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000423316		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000395119		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000529272		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000531621		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000524624		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000531770		ChiTaRS3.1			BF513928	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000394609	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000394609		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			BP251731	RTN4	chr2	55209673	-	RTN4	chr2	55253743	-
Frame-shit	ENST00000336967	ENST00000297423		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000336967	ENST00000518074		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000336967	ENST00000541342		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000336967	ENST00000521214		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000336967	ENST00000517693		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000336967	ENST00000518060		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391771	ENST00000297423		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391771	ENST00000518074		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391771	ENST00000541342		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391771	ENST00000521214		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391771	ENST00000517693		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391771	ENST00000518060		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391770	ENST00000297423		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391770	ENST00000518074		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391770	ENST00000541342		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391770	ENST00000521214		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391770	ENST00000517693		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391770	ENST00000518060		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391769	ENST00000297423		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391769	ENST00000518074		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391769	ENST00000541342		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391769	ENST00000521214		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391769	ENST00000517693		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391769	ENST00000518060		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391768	ENST00000297423		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391768	ENST00000518074		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391768	ENST00000541342		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391768	ENST00000521214		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391768	ENST00000517693		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391768	ENST00000518060		ChiTaRS3.1			BI021868	MYADM	chr19	54377456	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000401722	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
intron-3UTR	ENST00000228318	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
5CDS-3UTR	ENST00000188376	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
intron-3UTR	ENST00000551917	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
5CDS-3UTR	ENST00000552981	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
intron-3UTR	ENST00000551265	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
5CDS-3UTR	ENST00000547534	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
5CDS-3UTR	ENST00000549338	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
5CDS-3UTR	ENST00000548847	ENST00000264930		ChiTaRS3.1			BP431116	SLC25A3	chr12	98989559	+	SLC12A7	chr5	1050741	-
In-frame	ENST00000534358	ENST00000534358		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000389506		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000354520		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000534358		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000389506		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000354520		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000534358		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000389506		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000354520		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AY187942	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-intron	ENST00000452722	ENST00000297268		ChiTaRS3.1			BU625674	CADM1	chr11	115044413	+	COL1A2	chr7	94038920	-
intron-intron	ENST00000537140	ENST00000297268		ChiTaRS3.1			BU625674	CADM1	chr11	115044413	+	COL1A2	chr7	94038920	-
intron-intron	ENST00000542447	ENST00000297268		ChiTaRS3.1			BU625674	CADM1	chr11	115044413	+	COL1A2	chr7	94038920	-
intron-intron	ENST00000537058	ENST00000297268		ChiTaRS3.1			BU625674	CADM1	chr11	115044413	+	COL1A2	chr7	94038920	-
intron-intron	ENST00000536727	ENST00000297268		ChiTaRS3.1			BU625674	CADM1	chr11	115044413	+	COL1A2	chr7	94038920	-
intron-intron	ENST00000331581	ENST00000297268		ChiTaRS3.1			BU625674	CADM1	chr11	115044413	+	COL1A2	chr7	94038920	-
intron-3CDS	ENST00000239223	ENST00000239223		ChiTaRS3.1			BE501527	DUSP1	chr5	172197924	+	DUSP1	chr5	172195873	+
In-frame	ENST00000534894	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000534894	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000534894	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000536810	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000536810	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000536810	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000545257	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000545257	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000545257	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000355995	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000355995	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000355995	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000543371	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000543371	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000543371	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000355717	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000355717	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000355717	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000538897	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000538897	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000538897	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000349937	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000349937	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000349937	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000369397	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000369397	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000369397	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000352065	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000352065	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000352065	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000369395	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000369395	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
In-frame	ENST00000369395	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
5UTR-3CDS	ENST00000542695	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
5UTR-3CDS	ENST00000542695	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
5UTR-3CDS	ENST00000542695	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000369389	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000369389	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000369389	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000369386	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000369386	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000369386	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000466338	ENST00000284727		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000466338	ENST00000409194		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
intron-3CDS	ENST00000466338	ENST00000392541		ChiTaRS3.1			BF814890	TCF7L2	chr10	114799837	-	ATP5G3	chr2	176043929	-
5UTR-3CDS	ENST00000341376	ENST00000282388		ChiTaRS3.1			BM728873	NFYA	chr6	41040799	+	ZFP36L2	chr2	43452140	-
5UTR-3CDS	ENST00000353205	ENST00000282388		ChiTaRS3.1			BM728873	NFYA	chr6	41040799	+	ZFP36L2	chr2	43452140	-
intron-3CDS	ENST00000489520	ENST00000338034		ChiTaRS3.1			BX283235	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000395962		ChiTaRS3.1			BX283235	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000426905		ChiTaRS3.1			BX283235	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000609345		ChiTaRS3.1			BX283235	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000578071		ChiTaRS3.1			BX283235	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
5CDS-intron	ENST00000001008	ENST00000336452		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-5UTR	ENST00000001008	ENST00000336458		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-5UTR	ENST00000001008	ENST00000576930		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-5UTR	ENST00000001008	ENST00000572815		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-5UTR	ENST00000001008	ENST00000573542		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-intron	ENST00000001008	ENST00000419711		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-intron	ENST00000001008	ENST00000571955		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
5CDS-intron	ENST00000001008	ENST00000416016		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-intron	ENST00000540260	ENST00000336452		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-5UTR	ENST00000540260	ENST00000336458		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-5UTR	ENST00000540260	ENST00000576930		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-5UTR	ENST00000540260	ENST00000572815		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-5UTR	ENST00000540260	ENST00000573542		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-intron	ENST00000540260	ENST00000419711		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-intron	ENST00000540260	ENST00000571955		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-intron	ENST00000540260	ENST00000416016		ChiTaRS3.1			CN372949	FKBP4	chr12	2904351	+	EIF5A	chr17	7211044	+
intron-3CDS	ENST00000341846	ENST00000254351		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000341846	ENST00000381150		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000341846	ENST00000403076		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-5UTR	ENST00000341846	ENST00000482879		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000524816	ENST00000254351		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000524816	ENST00000381150		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000524816	ENST00000403076		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-5UTR	ENST00000524816	ENST00000482879		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000541857	ENST00000254351		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000541857	ENST00000381150		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000541857	ENST00000403076		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-5UTR	ENST00000541857	ENST00000482879		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000525887	ENST00000254351		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000525887	ENST00000381150		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000525887	ENST00000403076		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-5UTR	ENST00000525887	ENST00000482879		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000528870	ENST00000254351		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000528870	ENST00000381150		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000528870	ENST00000403076		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-5UTR	ENST00000528870	ENST00000482879		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000529044	ENST00000254351		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000529044	ENST00000381150		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000529044	ENST00000403076		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-5UTR	ENST00000529044	ENST00000482879		ChiTaRS3.1			BI055855	TRIM29	chr11	119991324	+	SDC1	chr2	20403811	+
intron-3CDS	ENST00000368732	ENST00000368732		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-3CDS	ENST00000368732	ENST00000368733		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-intron	ENST00000368732	ENST00000477801		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-3CDS	ENST00000368733	ENST00000368732		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-3CDS	ENST00000368733	ENST00000368733		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-intron	ENST00000368733	ENST00000477801		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-3CDS	ENST00000477801	ENST00000368732		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-3CDS	ENST00000477801	ENST00000368733		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
intron-intron	ENST00000477801	ENST00000477801		ChiTaRS3.1			BF895991	S100A8	chr1	153362647	+	S100A8	chr1	153362584	-
5CDS-5UTR	ENST00000582888	ENST00000597960		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000582888	ENST00000610101		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000582888	ENST00000596558		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000582888	ENST00000222308		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000582888	ENST00000608443		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000582888	ENST00000453489		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000602676	ENST00000597960		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000602676	ENST00000610101		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000602676	ENST00000596558		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000602676	ENST00000222308		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000602676	ENST00000608443		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000602676	ENST00000453489		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000322297	ENST00000597960		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000322297	ENST00000610101		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000322297	ENST00000596558		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000322297	ENST00000222308		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000322297	ENST00000608443		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000322297	ENST00000453489		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000583542	ENST00000597960		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000583542	ENST00000610101		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000583542	ENST00000596558		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000583542	ENST00000222308		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000583542	ENST00000608443		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
5CDS-5UTR	ENST00000583542	ENST00000453489		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-5UTR	ENST00000588673	ENST00000597960		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-5UTR	ENST00000588673	ENST00000610101		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-5UTR	ENST00000588673	ENST00000596558		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-5UTR	ENST00000588673	ENST00000222308		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-5UTR	ENST00000588673	ENST00000608443		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-5UTR	ENST00000588673	ENST00000453489		ChiTaRS3.1			CB153060	OAZ1	chr19	2269744	+	FKBP8	chr19	18652807	-
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			BQ292082	BOLA2	chr16	30081219	-	BOLA2	chr16	30081558	-
intron-3UTR	ENST00000285021	ENST00000591778		ChiTaRS3.1			BE159478	XPC	chr3	14199932	+	LGALS3BP	chr17	76967979	-
intron-3UTR	ENST00000285021	ENST00000262776		ChiTaRS3.1			BE159478	XPC	chr3	14199932	+	LGALS3BP	chr17	76967979	-
intron-intron	ENST00000285021	ENST00000585407		ChiTaRS3.1			BE159478	XPC	chr3	14199932	+	LGALS3BP	chr17	76967979	-
intron-3UTR	ENST00000449060	ENST00000591778		ChiTaRS3.1			BE159478	XPC	chr3	14199932	+	LGALS3BP	chr17	76967979	-
intron-3UTR	ENST00000449060	ENST00000262776		ChiTaRS3.1			BE159478	XPC	chr3	14199932	+	LGALS3BP	chr17	76967979	-
intron-intron	ENST00000449060	ENST00000585407		ChiTaRS3.1			BE159478	XPC	chr3	14199932	+	LGALS3BP	chr17	76967979	-
intron-3CDS	ENST00000431842	ENST00000555228		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000431842	ENST00000555661		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000431842	ENST00000553326		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000431842	ENST00000267568		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000431842	ENST00000553813		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000493960	ENST00000555228		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000493960	ENST00000555661		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000493960	ENST00000553326		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000493960	ENST00000267568		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000493960	ENST00000553813		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000355628	ENST00000555228		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000355628	ENST00000555661		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000355628	ENST00000553326		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000355628	ENST00000267568		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000355628	ENST00000553813		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000485156	ENST00000555228		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-3CDS	ENST00000485156	ENST00000555661		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000485156	ENST00000553326		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000485156	ENST00000267568		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000485156	ENST00000553813		ChiTaRS3.1			CV334907	FAM208A	chr3	56660323	+	PTGR2	chr14	74346801	-
intron-intron	ENST00000358161	ENST00000583983		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000358161	ENST00000578552		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000358161	ENST00000320548		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000358161	ENST00000355130		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000358161	ENST00000306823		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000358161	ENST00000392358		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372739	ENST00000583983		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372739	ENST00000578552		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372739	ENST00000320548		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372739	ENST00000355130		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372739	ENST00000306823		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372739	ENST00000392358		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372731	ENST00000583983		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372731	ENST00000578552		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372731	ENST00000320548		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372731	ENST00000355130		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372731	ENST00000306823		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000372731	ENST00000392358		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000475367	ENST00000583983		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000475367	ENST00000578552		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000475367	ENST00000320548		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000475367	ENST00000355130		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000475367	ENST00000306823		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000475367	ENST00000392358		ChiTaRS3.1			AA368286	SPTAN1	chr9	131394709	-	GPS1	chr17	80012815	+
intron-intron	ENST00000357325	ENST00000357325		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000357325	ENST00000537739		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000357325	ENST00000368209		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000357325	ENST00000465180		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000357325	ENST00000416666		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000357325	ENST00000368206		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000537739	ENST00000357325		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000537739	ENST00000537739		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000537739	ENST00000368209		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000537739	ENST00000465180		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000537739	ENST00000416666		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000537739	ENST00000368206		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368209	ENST00000357325		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368209	ENST00000537739		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368209	ENST00000368209		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368209	ENST00000465180		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368209	ENST00000416666		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368209	ENST00000368206		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000465180	ENST00000357325		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000465180	ENST00000537739		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000465180	ENST00000368209		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000465180	ENST00000465180		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000465180	ENST00000416666		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000465180	ENST00000368206		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000416666	ENST00000357325		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000416666	ENST00000537739		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000416666	ENST00000368209		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000416666	ENST00000465180		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000416666	ENST00000416666		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000416666	ENST00000368206		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368206	ENST00000357325		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368206	ENST00000537739		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368206	ENST00000368209		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368206	ENST00000465180		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368206	ENST00000416666		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
intron-intron	ENST00000368206	ENST00000368206		ChiTaRS3.1			BF087218	HDGF	chr1	156714067	+	HDGF	chr11	121899488	-
5UTR-3CDS	ENST00000263955	ENST00000437600		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-3CDS	ENST00000263955	ENST00000292538		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-3CDS	ENST00000263955	ENST00000393824		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-3CDS	ENST00000263955	ENST00000547394		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000360264		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000425244		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000292535		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000549414		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000556210		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000550008		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-intron	ENST00000263955	ENST00000546411		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
5UTR-3UTR	ENST00000263955	ENST00000560541		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-3CDS	ENST00000409228	ENST00000437600		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-3CDS	ENST00000409228	ENST00000292538		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-3CDS	ENST00000409228	ENST00000393824		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-3CDS	ENST00000409228	ENST00000547394		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000360264		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000425244		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000292535		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000549414		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000556210		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000550008		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-intron	ENST00000409228	ENST00000546411		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
intron-3UTR	ENST00000409228	ENST00000560541		ChiTaRS3.1			DB106415	STK17B	chr2	197036056	-	CUX1	chr7	101916636	+
Frame-shit	ENST00000368226	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368226	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000368226	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368227	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368227	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000368227	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000532331	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000532331	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000532331	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368213	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368213	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000368213	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368210	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368210	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000368210	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368215	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368215	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000368215	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368207	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000368207	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000368207	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5UTR-3CDS	ENST00000524481	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5UTR-3CDS	ENST00000524481	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5UTR-intron	ENST00000524481	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000525459	ENST00000340811		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
Frame-shit	ENST00000525459	ENST00000070846		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
5CDS-intron	ENST00000525459	ENST00000546741		ChiTaRS3.1			DA380160	PTPRK	chr6	128841403	-	PKP2	chr12	33031970	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			BE173877	EEF2	chr19	3977925	-	EEF2	chr19	3982305	-
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			BE173877	EEF2	chr19	3977925	-	EEF2	chr19	3982305	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			BE173877	EEF2	chr19	3977925	-	EEF2	chr19	3982305	-
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			BE173877	EEF2	chr19	3977925	-	EEF2	chr19	3982305	-
5UTR-3CDS	ENST00000341724	ENST00000466548		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000341724	ENST00000418532		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000341724	ENST00000488699		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000341724	ENST00000267219		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000341724	ENST00000351546		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000341724	ENST00000465831		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000341724	ENST00000314070		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000341724	ENST00000358679		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-3CDS	ENST00000372004	ENST00000466548		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000372004	ENST00000418532		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000372004	ENST00000488699		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000372004	ENST00000267219		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000372004	ENST00000351546		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000372004	ENST00000465831		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000372004	ENST00000314070		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000372004	ENST00000358679		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-3CDS	ENST00000371998	ENST00000466548		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000371998	ENST00000418532		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000371998	ENST00000488699		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371998	ENST00000267219		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371998	ENST00000351546		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371998	ENST00000465831		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371998	ENST00000314070		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371998	ENST00000358679		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-3CDS	ENST00000371997	ENST00000466548		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000371997	ENST00000418532		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-5UTR	ENST00000371997	ENST00000488699		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371997	ENST00000267219		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371997	ENST00000351546		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371997	ENST00000465831		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371997	ENST00000314070		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
5UTR-intron	ENST00000371997	ENST00000358679		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-3CDS	ENST00000497292	ENST00000466548		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-5UTR	ENST00000497292	ENST00000418532		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-5UTR	ENST00000497292	ENST00000488699		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-intron	ENST00000497292	ENST00000267219		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-intron	ENST00000497292	ENST00000351546		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-intron	ENST00000497292	ENST00000465831		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-intron	ENST00000497292	ENST00000314070		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-intron	ENST00000497292	ENST00000358679		ChiTaRS3.1			DA523336	NCOA3	chr20	46130765	+	SLAIN1	chr13	78293665	+
intron-intron	ENST00000376621	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000376621	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000376621	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383450	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383450	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000441604	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000441604	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550904	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550904	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000428189	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000428189	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551708	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551708	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000437917	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000437917	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000548423	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000548423	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383596	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383596	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550942	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550942	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000454829	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000454829	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000552589	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000552589	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000417834	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000417834	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000376621		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000383450		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000441604		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000550904		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000428189		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000551708		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000437917		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000548423		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000383596		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000550942		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000454829		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000552589		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551903	ENST00000417834		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551903	ENST00000551903		ChiTaRS3.1			AA513620	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3CDS	ENST00000534307	ENST00000271526		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3CDS	ENST00000534307	ENST00000353233		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3UTR	ENST00000534307	ENST00000491853		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000528302	ENST00000271526		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000528302	ENST00000353233		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
5CDS-3UTR	ENST00000528302	ENST00000491853		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000322535	ENST00000271526		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000322535	ENST00000353233		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
5CDS-3UTR	ENST00000322535	ENST00000491853		ChiTaRS3.1			BE089928	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-intron	ENST00000343348	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372391		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372388		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000459739		ChiTaRS3.1			BF990536	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-3CDS	ENST00000280187	ENST00000281142		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000280187	ENST00000434680		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000280187	ENST00000439369		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000280187	ENST00000503215		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-5UTR	ENST00000280187	ENST00000502495		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000280187	ENST00000506368		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000280187	ENST00000511426		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000280187	ENST00000503401		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-3CDS	ENST00000393658	ENST00000281142		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000393658	ENST00000434680		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000393658	ENST00000439369		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000393658	ENST00000503215		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-5UTR	ENST00000393658	ENST00000502495		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000393658	ENST00000506368		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000393658	ENST00000511426		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000393658	ENST00000503401		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-3CDS	ENST00000506894	ENST00000281142		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506894	ENST00000434680		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506894	ENST00000439369		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506894	ENST00000503215		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-5UTR	ENST00000506894	ENST00000502495		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506894	ENST00000506368		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506894	ENST00000511426		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506894	ENST00000503401		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-3CDS	ENST00000515090	ENST00000281142		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000515090	ENST00000434680		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000515090	ENST00000439369		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000515090	ENST00000503215		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-5UTR	ENST00000515090	ENST00000502495		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000515090	ENST00000506368		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000515090	ENST00000511426		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000515090	ENST00000503401		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-3CDS	ENST00000506219	ENST00000281142		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506219	ENST00000434680		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506219	ENST00000439369		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506219	ENST00000503215		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-5UTR	ENST00000506219	ENST00000502495		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506219	ENST00000506368		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506219	ENST00000511426		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-intron	ENST00000506219	ENST00000503401		ChiTaRS3.1			BF956714	GPM6A	chr4	176561949	+	SCLT1	chr4	129858004	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835104	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
In-frame	ENST00000540468	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000540468	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000540468	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000540468	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000540468	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000540468	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
5CDS-3UTR	ENST00000540468	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000539919	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000539919	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000539919	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000539919	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000539919	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000539919	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
5CDS-3UTR	ENST00000539919	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000258091	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000258091	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000258091	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000258091	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000258091	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000258091	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
5CDS-3UTR	ENST00000258091	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000398422	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000398422	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000398422	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000398422	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000398422	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000398422	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
5CDS-3UTR	ENST00000398422	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000537131	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000537131	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000537131	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000537131	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000537131	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000537131	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
5CDS-3UTR	ENST00000537131	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000538797	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000538797	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000538797	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000538797	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000538797	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
In-frame	ENST00000538797	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
5CDS-3UTR	ENST00000538797	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3CDS	ENST00000473786	ENST00000540468		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3CDS	ENST00000473786	ENST00000539919		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3CDS	ENST00000473786	ENST00000258091		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3CDS	ENST00000473786	ENST00000398422		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3CDS	ENST00000473786	ENST00000537131		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3CDS	ENST00000473786	ENST00000538797		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
3UTR-3UTR	ENST00000473786	ENST00000473786		ChiTaRS3.1			AA192763	CCT7	chr2	73475003	+	CCT7	chr2	73476192	-
intron-3CDS	ENST00000325285	ENST00000358514		ChiTaRS3.1			BE832990	FBXW5	chr9	139835187	+	PSMB10	chr16	67970383	-
intron-3CDS	ENST00000483559	ENST00000358514		ChiTaRS3.1			BE832990	FBXW5	chr9	139835187	+	PSMB10	chr16	67970383	-
intron-intron	ENST00000373094	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373094	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373094	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373094	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373097	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373097	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373097	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373097	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000406881	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000406881	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000406881	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000406881	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000298274	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000298274	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000298274	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000298274	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361655	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361655	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361655	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361655	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373088	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373088	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373088	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000373088	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000504220	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000504220	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000504220	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000504220	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000395337	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000395337	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000395337	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000395337	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361724	ENST00000301187		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361724	ENST00000416963		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361724	ENST00000376591		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-intron	ENST00000361724	ENST00000476013		ChiTaRS3.1			DQ656026	PCDH11X	chrX	91157723	-	TMC4	chr19	54676447	-
intron-3CDS	ENST00000285093	ENST00000389467		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-3CDS	ENST00000285093	ENST00000446231		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-intron	ENST00000285093	ENST00000565224		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-intron	ENST00000285093	ENST00000567737		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-3CDS	ENST00000589432	ENST00000389467		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-3CDS	ENST00000589432	ENST00000446231		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-intron	ENST00000589432	ENST00000565224		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-intron	ENST00000589432	ENST00000567737		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-3CDS	ENST00000587994	ENST00000389467		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-3CDS	ENST00000587994	ENST00000446231		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-intron	ENST00000587994	ENST00000565224		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-intron	ENST00000587994	ENST00000567737		ChiTaRS3.1			BE842124	ACAA2	chr18	47313702	-	SMG1	chr16	18845615	+
intron-3CDS	ENST00000578558	ENST00000006658		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000578558	ENST00000356488		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000578558	ENST00000393244		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3UTR	ENST00000578558	ENST00000511937		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000327031	ENST00000006658		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000327031	ENST00000356488		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000327031	ENST00000393244		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3UTR	ENST00000327031	ENST00000511937		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000545457	ENST00000006658		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000545457	ENST00000356488		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000545457	ENST00000393244		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3UTR	ENST00000545457	ENST00000511937		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000379450	ENST00000006658		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000379450	ENST00000356488		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000379450	ENST00000393244		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3UTR	ENST00000379450	ENST00000511937		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000579294	ENST00000006658		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000579294	ENST00000356488		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000579294	ENST00000393244		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3UTR	ENST00000579294	ENST00000511937		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000584444	ENST00000006658		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000584444	ENST00000356488		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3CDS	ENST00000584444	ENST00000393244		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
intron-3UTR	ENST00000584444	ENST00000511937		ChiTaRS3.1			BE075823	FLII	chr17	18148734	+	SPATA20	chr17	48632663	-
5CDS-intron	ENST00000315796	ENST00000526343		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
5CDS-intron	ENST00000315796	ENST00000282441		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
5CDS-intron	ENST00000315796	ENST00000537274		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
5CDS-intron	ENST00000315796	ENST00000345877		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
5CDS-intron	ENST00000315796	ENST00000531439		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
5CDS-intron	ENST00000315796	ENST00000524575		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
5CDS-intron	ENST00000315796	ENST00000528834		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000526343		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000282441		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000537274		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000345877		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000531439		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000524575		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
3UTR-intron	ENST00000488581	ENST00000528834		ChiTaRS3.1			BQ370439	METAP1D	chr2	172944922	+	YAP1	chr11	102020541	+
intron-intron	ENST00000540235	ENST00000540235		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000540235	ENST00000393930		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000540235	ENST00000393931		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000540235	ENST00000310706		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393930	ENST00000540235		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393930	ENST00000393930		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393930	ENST00000393931		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393930	ENST00000310706		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393931	ENST00000540235		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393931	ENST00000393930		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393931	ENST00000393931		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000393931	ENST00000310706		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000310706	ENST00000540235		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000310706	ENST00000393930		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000310706	ENST00000393931		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000310706	ENST00000310706		ChiTaRS3.1			AA632538	JUP	chr17	39921016	-	JUP	chr17	39921234	+
intron-intron	ENST00000376406	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000376406	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000376406	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376406	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000376405	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000376405	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000376405	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000494654	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000494654	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494654	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000427406	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000427406	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000427406	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547874	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547874	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547874	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000551460	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000551460	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551460	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547700	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547700	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547700	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000481026	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000481026	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481026	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552522	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552522	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552522	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000420019	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000420019	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420019	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548112	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548112	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548112	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550004	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550004	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550004	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548103	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548103	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548103	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000473187	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000473187	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000473187	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552474	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552474	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552474	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000420320	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000420320	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000420320	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552263	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552263	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552263	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000551204	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000551204	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551204	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000549428	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000549428	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000549428	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000495325	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000495325	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000495325	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547681	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547681	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547681	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000449153	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000449153	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000449153	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000553048	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000553048	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553048	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000546487	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000546487	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546487	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000553196	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000553196	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000553196	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000494715	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000494715	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000494715	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547353	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547353	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547353	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000383566	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000383566	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000383566	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548827	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548827	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548827	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552349	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000552349	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000552349	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550408	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550408	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550408	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000481547	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000481547	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000481547	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550688	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550688	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550688	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000440369	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000440369	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000440369	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547047	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000547047	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000547047	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548542	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548542	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548542	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548248	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548248	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548248	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000482029	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000482029	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000482029	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550500	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000550500	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000550500	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000435664	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000435664	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000435664	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548433	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000548433	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000548433	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000551740	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000551740	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000551740	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000467476	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000467476	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000467476	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000376406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000376405		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000494654		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000427406		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000547874		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000551460		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000547700		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000481026		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000552522		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000420019		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000548112		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000550004		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000548103		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000473187		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000552474		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000420320		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000552263		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000551204		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000546539	ENST00000549428		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000495325		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000547681		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000449153		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000553048		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000546487		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000553196		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000494715		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000547353		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000383566		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000548827		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000552349		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-3UTR	ENST00000546539	ENST00000550408		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000481547		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000550688		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000440369		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000547047		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000548542		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000548248		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000482029		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000550500		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000435664		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000548433		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000551740		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000467476		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000546539	ENST00000546539		ChiTaRS3.1			AA424874	MDC1	chr6	2005816	+	MDC1	chr6	1964947	+
intron-intron	ENST00000244769	ENST00000356462		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000400345		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000589054		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000256832		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000382850		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000256830		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000588516		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000456986		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000435432		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000357895		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000586263		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000456173		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000244769	ENST00000431212		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000356462		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000400345		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000589054		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000256832		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000382850		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000256830		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000588516		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000456986		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000435432		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000357895		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000586263		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000456173		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000436367	ENST00000431212		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000356462		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000400345		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000589054		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000256832		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000382850		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000256830		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000588516		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000456986		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000435432		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000357895		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000586263		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000456173		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-intron	ENST00000467008	ENST00000431212		ChiTaRS3.1			BG983407	ATXN1	chr6	16429267	-	NEDD4L	chr18	56042267	+
intron-3CDS	ENST00000427908	ENST00000568449		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000427908	ENST00000307394		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000423571	ENST00000568449		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000423571	ENST00000307394		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000439742	ENST00000568449		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000439742	ENST00000307394		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000513063	ENST00000568449		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
intron-3CDS	ENST00000513063	ENST00000307394		ChiTaRS3.1			AI218273	MXD3	chr5	176734292	+	EME2	chr16	1826195	-
Frame-shit	ENST00000603302	ENST00000322723		ChiTaRS3.1			BQ314823	HADH	chr4	108955491	+	NCL	chr2	232322411	-
In-frame	ENST00000403312	ENST00000322723		ChiTaRS3.1			BQ314823	HADH	chr4	108955491	+	NCL	chr2	232322411	-
In-frame	ENST00000309522	ENST00000322723		ChiTaRS3.1			BQ314823	HADH	chr4	108955491	+	NCL	chr2	232322411	-
Frame-shit	ENST00000505878	ENST00000322723		ChiTaRS3.1			BQ314823	HADH	chr4	108955491	+	NCL	chr2	232322411	-
Frame-shit	ENST00000454409	ENST00000322723		ChiTaRS3.1			BQ314823	HADH	chr4	108955491	+	NCL	chr2	232322411	-
3UTR-3CDS	ENST00000510728	ENST00000322723		ChiTaRS3.1			BQ314823	HADH	chr4	108955491	+	NCL	chr2	232322411	-
intron-intron	ENST00000376874	ENST00000371720		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000376874	ENST00000371717		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000376874	ENST00000399219		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000376874	ENST00000462616		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000340724	ENST00000371720		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000340724	ENST00000371717		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000340724	ENST00000399219		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000340724	ENST00000462616		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000544468	ENST00000371720		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000544468	ENST00000371717		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000544468	ENST00000399219		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000544468	ENST00000462616		ChiTaRS3.1			BF742243	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000318789	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318789	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000475937	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000493089	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000484350	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000318779	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000491238	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000498215	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000468577	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000318789		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000475937		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000493089		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000484350		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000318779		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000491238		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000498215		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000468577		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-intron	ENST00000472382	ENST00000472382		ChiTaRS3.1			BF447334	FOXP1	chr3	71102926	+	FOXP1	chr3	71090477	+
intron-5UTR	ENST00000318607	ENST00000439817		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000318607	ENST00000361464		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000318607	ENST00000482611		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000318607	ENST00000357797		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000318607	ENST00000370094		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000318607	ENST00000419011		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519004	ENST00000439817		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519004	ENST00000361464		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000519004	ENST00000482611		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519004	ENST00000357797		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519004	ENST00000370094		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000519004	ENST00000419011		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000522387	ENST00000439817		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000522387	ENST00000361464		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000522387	ENST00000482611		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000522387	ENST00000357797		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000522387	ENST00000370094		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000522387	ENST00000419011		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519596	ENST00000439817		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519596	ENST00000361464		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000519596	ENST00000482611		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519596	ENST00000357797		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-5UTR	ENST00000519596	ENST00000370094		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-intron	ENST00000519596	ENST00000419011		ChiTaRS3.1			AA731281	PABPC1	chr8	101733727	-	MGEA5	chr10	103578141	-
intron-3UTR	ENST00000453386	ENST00000354171		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000453386	ENST00000589115		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000382191	ENST00000354171		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000382191	ENST00000589115		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000471134	ENST00000354171		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000471134	ENST00000589115		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000342294	ENST00000354171		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3UTR	ENST00000342294	ENST00000589115		ChiTaRS3.1			BF111779	TRA2B	chr3	185635176	+	GPX4	chr19	1106614	-
intron-3CDS	ENST00000369026	ENST00000389266		ChiTaRS3.1			AI797617	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000464132	ENST00000389266		ChiTaRS3.1			AI797617	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000307940	ENST00000389266		ChiTaRS3.1			AI797617	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3UTR	ENST00000377795	ENST00000431992		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000377795	ENST00000373422		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000377795	ENST00000257118		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000377795	ENST00000419414		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000377795	ENST00000373416		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-5UTR	ENST00000377795	ENST00000485928		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000377795	ENST00000373418		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000353334	ENST00000431992		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000353334	ENST00000373422		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000353334	ENST00000257118		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000353334	ENST00000419414		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000353334	ENST00000373416		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-5UTR	ENST00000353334	ENST00000485928		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000353334	ENST00000373418		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000524315	ENST00000431992		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000524315	ENST00000373422		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000524315	ENST00000257118		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000524315	ENST00000419414		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000524315	ENST00000373416		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-5UTR	ENST00000524315	ENST00000485928		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000524315	ENST00000373418		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000009530	ENST00000431992		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000009530	ENST00000373422		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000009530	ENST00000257118		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000009530	ENST00000419414		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-intron	ENST00000009530	ENST00000373416		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-5UTR	ENST00000009530	ENST00000485928		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
intron-3UTR	ENST00000009530	ENST00000373418		ChiTaRS3.1			DT218441	CD74	chr5	149784685	-	PHC2	chr1	33790129	-
Frame-shit	ENST00000322861	ENST00000354452		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000356073		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000568673		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000457482		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000543082		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000540999		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000537578		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000564999		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000568740		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000537856		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000544241		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000561992		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000561831		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000565018		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000570287		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000564228		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000567880		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000566286		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000566279		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000564403		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000398339		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
Frame-shit	ENST00000322861	ENST00000570177		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
5CDS-intron	ENST00000322861	ENST00000563760		ChiTaRS3.1			BM873773	MYLPF	chr16	30389191	+	TCF4	chr18	52896109	-
intron-3CDS	ENST00000375299	ENST00000298622		ChiTaRS3.1			BF925130	UPF3A	chr13	115060839	-	JAKMIP3	chr10	133961488	-
intron-3UTR	ENST00000375299	ENST00000477275		ChiTaRS3.1			BF925130	UPF3A	chr13	115060839	-	JAKMIP3	chr10	133961488	-
intron-3CDS	ENST00000351487	ENST00000298622		ChiTaRS3.1			BF925130	UPF3A	chr13	115060839	-	JAKMIP3	chr10	133961488	-
intron-3UTR	ENST00000351487	ENST00000477275		ChiTaRS3.1			BF925130	UPF3A	chr13	115060839	-	JAKMIP3	chr10	133961488	-
intron-3CDS	ENST00000475218	ENST00000298622		ChiTaRS3.1			BF925130	UPF3A	chr13	115060839	-	JAKMIP3	chr10	133961488	-
intron-3UTR	ENST00000475218	ENST00000477275		ChiTaRS3.1			BF925130	UPF3A	chr13	115060839	-	JAKMIP3	chr10	133961488	-
intron-intron	ENST00000356554	ENST00000356554		ChiTaRS3.1			AW801968	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			AW801968	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000356554		ChiTaRS3.1			AW801968	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			AW801968	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-3CDS	ENST00000390394	ENST00000221801		ChiTaRS3.1			CK904539	TRBV20-1	chr7	142482370	-	FBL	chr19	40330928	+
intron-intron	ENST00000390394	ENST00000593503		ChiTaRS3.1			CK904539	TRBV20-1	chr7	142482370	-	FBL	chr19	40330928	+
intron-3UTR	ENST00000443053	ENST00000443053		ChiTaRS3.1			BE074580	CISH	chr3	50644743	-	CISH	chr3	50644869	+
intron-3UTR	ENST00000443053	ENST00000348721		ChiTaRS3.1			BE074580	CISH	chr3	50644743	-	CISH	chr3	50644869	+
intron-3UTR	ENST00000348721	ENST00000443053		ChiTaRS3.1			BE074580	CISH	chr3	50644743	-	CISH	chr3	50644869	+
intron-3UTR	ENST00000348721	ENST00000348721		ChiTaRS3.1			BE074580	CISH	chr3	50644743	-	CISH	chr3	50644869	+
3UTR-3CDS	ENST00000376236	ENST00000331925		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
3UTR-3CDS	ENST00000376236	ENST00000573283		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
3UTR-3CDS	ENST00000376236	ENST00000575842		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
3UTR-3CDS	ENST00000376236	ENST00000575087		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000356785	ENST00000331925		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000356785	ENST00000573283		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000356785	ENST00000575842		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000356785	ENST00000575087		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000493857	ENST00000331925		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000493857	ENST00000573283		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000493857	ENST00000575842		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000493857	ENST00000575087		ChiTaRS3.1			BF879628	APBB1IP	chr10	26856540	+	ACTG1	chr17	79478441	-
intron-3CDS	ENST00000444376	ENST00000444376		ChiTaRS3.1			AA482733	HNRNPU	chr1	245020123	-	HNRNPU	chr1	245020947	+
intron-3CDS	ENST00000444376	ENST00000283179		ChiTaRS3.1			AA482733	HNRNPU	chr1	245020123	-	HNRNPU	chr1	245020947	+
intron-3CDS	ENST00000283179	ENST00000444376		ChiTaRS3.1			AA482733	HNRNPU	chr1	245020123	-	HNRNPU	chr1	245020947	+
intron-3CDS	ENST00000283179	ENST00000283179		ChiTaRS3.1			AA482733	HNRNPU	chr1	245020123	-	HNRNPU	chr1	245020947	+
intron-3CDS	ENST00000540235	ENST00000507955		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
intron-intron	ENST00000540235	ENST00000506965		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
In-frame	ENST00000393930	ENST00000507955		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
5CDS-intron	ENST00000393930	ENST00000506965		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
Frame-shit	ENST00000393931	ENST00000507955		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
5CDS-intron	ENST00000393931	ENST00000506965		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
In-frame	ENST00000310706	ENST00000507955		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
5CDS-intron	ENST00000310706	ENST00000506965		ChiTaRS3.1			BE075620	JUP	chr17	39913672	-	DDX41	chr5	176938901	-
intron-intron	ENST00000512438	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000512438	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000512438	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000512438	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000512438	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000512438	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000512438	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000610009	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000502693	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000499430	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000507244	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000514763	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000512438		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000610009		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000502693		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000499430		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000507244		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000514763		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
intron-intron	ENST00000608184	ENST00000608184		ChiTaRS3.1			AW946409	STX18-AS1	chr4	4610002	-	STX18-AS1	chr4	4610098	+
5CDS-intron	ENST00000561924	ENST00000396353		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000561924	ENST00000396355		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000561924	ENST00000396354		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000561924	ENST00000342673		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000561924	ENST00000571896		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-intron	ENST00000290858	ENST00000396353		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000290858	ENST00000396355		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000290858	ENST00000396354		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000290858	ENST00000342673		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000290858	ENST00000571896		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-intron	ENST00000412916	ENST00000396353		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000412916	ENST00000396355		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000412916	ENST00000396354		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000412916	ENST00000342673		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
5CDS-3UTR	ENST00000412916	ENST00000571896		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
intron-intron	ENST00000568858	ENST00000396353		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
intron-3UTR	ENST00000568858	ENST00000396355		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
intron-3UTR	ENST00000568858	ENST00000396354		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
intron-3UTR	ENST00000568858	ENST00000342673		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
intron-3UTR	ENST00000568858	ENST00000571896		ChiTaRS3.1			AF249897	CBFB	chr16	67116211	+	NDE1	chr16	15818851	-
intron-3CDS	ENST00000380877	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3CDS	ENST00000220429	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3CDS	ENST00000543881	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3CDS	ENST00000429662	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3CDS	ENST00000396464	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3CDS	ENST00000359031	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3CDS	ENST00000560825	ENST00000367188		ChiTaRS3.1			BG004010	GABPB1	chr15	50613517	-	PPP1R15B	chr1	204380002	-
intron-3UTR	ENST00000346798	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000346798	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000346798	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000354192	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000354192	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000348990	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000348990	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000357903	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000357903	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000358918	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000358918	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000359726	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000359726	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000448388	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000448388	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000440126	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000440126	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000439274	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000439274	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000346798		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000354192		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000348990		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000357903		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000358918		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000359726		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000448388		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000440126		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-3UTR	ENST00000474136	ENST00000439274		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
intron-intron	ENST00000474136	ENST00000474136		ChiTaRS3.1			BE142898	APP	chr21	27394337	+	APP	chr21	27253965	+
3UTR-3UTR	ENST00000357847	ENST00000434658		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000357847	ENST00000359889		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000357847	ENST00000369643		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000357847	ENST00000447601		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000357847	ENST00000369641		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000357847	ENST00000393572		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000357847	ENST00000492763		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000344492	ENST00000434658		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000344492	ENST00000359889		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000344492	ENST00000369643		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-3UTR	ENST00000344492	ENST00000447601		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000344492	ENST00000369641		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000344492	ENST00000393572		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000344492	ENST00000492763		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000275235	ENST00000434658		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000275235	ENST00000359889		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000275235	ENST00000369643		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000275235	ENST00000447601		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000275235	ENST00000369641		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000275235	ENST00000393572		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000275235	ENST00000492763		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367598	ENST00000434658		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367598	ENST00000359889		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367598	ENST00000369643		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367598	ENST00000447601		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000367598	ENST00000369641		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000367598	ENST00000393572		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000367598	ENST00000492763		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000494282	ENST00000434658		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000494282	ENST00000359889		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000494282	ENST00000369643		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000494282	ENST00000447601		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000494282	ENST00000369641		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000494282	ENST00000393572		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000494282	ENST00000492763		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367596	ENST00000434658		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367596	ENST00000359889		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367596	ENST00000369643		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-3UTR	ENST00000367596	ENST00000447601		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000367596	ENST00000369641		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000367596	ENST00000393572		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
intron-intron	ENST00000367596	ENST00000492763		ChiTaRS3.1			BQ081920	AIG1	chr6	143661275	+	FAM3A	chrX	153734552	-
3UTR-intron	ENST00000325568	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000325568	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000325568	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000325568	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000325568	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000534507	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000534507	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000534507	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000534507	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000534507	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000531965	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000531965	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000531965	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000531965	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000531965	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000396887	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000396887	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000396887	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000396887	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000396887	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000529699	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000529699	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000529699	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000529699	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000529699	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000526464	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000526464	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000526464	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000526464	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000526464	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000440815	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000440815	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000440815	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000440815	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000440815	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000529550	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000529550	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000529550	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000529550	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000529550	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000551122	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000551122	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000551122	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000551122	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000551122	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000525643	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000525643	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000525643	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000525643	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000525643	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000528163	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000528163	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000528163	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000528163	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000528163	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000530890	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000530890	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000530890	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000530890	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000530890	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000444393	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000444393	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000444393	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000444393	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000444393	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000533097	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000533097	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000533097	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000533097	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000533097	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000008180	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000008180	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000008180	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000008180	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000008180	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000396890	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000396890	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000396890	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000396890	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000396890	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000548652	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000548652	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000548652	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000548652	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000548652	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000530538	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000530538	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000530538	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000530538	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000530538	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000549213	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000549213	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000549213	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000549213	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000549213	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000552936	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000552936	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000552936	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000552936	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000552936	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000548476	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000548476	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000548476	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000548476	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000548476	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000552664	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000552664	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000552664	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000552664	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000552664	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000552356	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000552356	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000552356	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000552356	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000552356	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000551513	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000551513	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000551513	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000551513	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000551513	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000382213	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000382213	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000382213	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-5UTR	ENST00000382213	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
3UTR-intron	ENST00000382213	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000548246	ENST00000443358		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000548246	ENST00000376649		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000548246	ENST00000440818		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000548246	ENST00000542167		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-intron	ENST00000548246	ENST00000535067		ChiTaRS3.1			AI656034	IL32	chr16	3119429	-	PUS1	chr12	132413949	-
intron-5UTR	ENST00000473144	ENST00000542413		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000473144	ENST00000600978		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000473144	ENST00000598168		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000473144	ENST00000411902		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000473144	ENST00000253727		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000473144	ENST00000599105		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000473144	ENST00000593926		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-5UTR	ENST00000343410	ENST00000542413		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000343410	ENST00000600978		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000343410	ENST00000598168		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000343410	ENST00000411902		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000343410	ENST00000253727		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000343410	ENST00000599105		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-intron	ENST00000343410	ENST00000593926		ChiTaRS3.1			BE086059	HHIPL2	chr1	222715394	+	NR1H2	chr19	50881831	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835088	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000392503	ENST00000418734		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-3CDS	ENST00000392503	ENST00000397676		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-3CDS	ENST00000392503	ENST00000445626		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-3CDS	ENST00000392503	ENST00000455059		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-intron	ENST00000392503	ENST00000463495		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000418734		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000397676		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000445626		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000455059		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
5CDS-intron	ENST00000334586	ENST00000463495		ChiTaRS3.1			BF916293	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
Frame-shit	ENST00000596304	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000596304	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000430157	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000430157	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000596273	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000596273	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000442744	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000442744	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000595683	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000595683	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000595158	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000595158	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000598780	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000598780	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000599551	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000599551	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000597451	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000597451	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
Frame-shit	ENST00000599595	ENST00000305366		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
5CDS-intron	ENST00000599595	ENST00000472441		ChiTaRS3.1			BE070452	UBA52	chr19	18684189	-	TM4SF1	chr3	149095258	-
intron-intron	ENST00000339438	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000339438	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000339438	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000339438	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000438362	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000438362	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000438362	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000438362	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000358528	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000358528	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000358528	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000358528	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000261443	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000261443	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000261443	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000261443	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000530886	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000530886	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000530886	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000530886	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000369530	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000369530	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000369530	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000369530	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000483407	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000483407	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000483407	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000483407	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000534699	ENST00000371754		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000534699	ENST00000469991		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000534699	ENST00000371752		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
intron-intron	ENST00000534699	ENST00000396105		ChiTaRS3.1			DA635461	CSDE1	chr1	115260801	-	ZNFX1	chr20	47865650	-
In-frame	ENST00000374050	ENST00000398519		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
In-frame	ENST00000374050	ENST00000314028		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
In-frame	ENST00000374050	ENST00000392334		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
5CDS-5UTR	ENST00000374050	ENST00000578904		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
3UTR-3CDS	ENST00000473413	ENST00000398519		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
3UTR-3CDS	ENST00000473413	ENST00000314028		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
3UTR-3CDS	ENST00000473413	ENST00000392334		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
3UTR-5UTR	ENST00000473413	ENST00000578904		ChiTaRS3.1			DA444623	ATP6V1G1	chr9	117350153	+	CSNK1D	chr17	80213344	-
intron-3CDS	ENST00000262367	ENST00000262367		ChiTaRS3.1			AA828778	CREBBP	chr16	3807883	-	CREBBP	chr16	3807820	+
intron-3CDS	ENST00000262367	ENST00000382070		ChiTaRS3.1			AA828778	CREBBP	chr16	3807883	-	CREBBP	chr16	3807820	+
intron-3CDS	ENST00000382070	ENST00000262367		ChiTaRS3.1			AA828778	CREBBP	chr16	3807883	-	CREBBP	chr16	3807820	+
intron-3CDS	ENST00000382070	ENST00000382070		ChiTaRS3.1			AA828778	CREBBP	chr16	3807883	-	CREBBP	chr16	3807820	+
5CDS-3UTR	ENST00000380903	ENST00000415912		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
5CDS-3UTR	ENST00000380903	ENST00000357071		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
5CDS-3UTR	ENST00000380903	ENST00000374893		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
5CDS-3UTR	ENST00000380903	ENST00000436918		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
5CDS-intron	ENST00000380903	ENST00000264205		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
5CDS-intron	ENST00000380903	ENST00000528294		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
3UTR-3UTR	ENST00000492092	ENST00000415912		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
3UTR-3UTR	ENST00000492092	ENST00000357071		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
3UTR-3UTR	ENST00000492092	ENST00000374893		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
3UTR-3UTR	ENST00000492092	ENST00000436918		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
3UTR-intron	ENST00000492092	ENST00000264205		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
3UTR-intron	ENST00000492092	ENST00000528294		ChiTaRS3.1			BF932164	SELO	chr22	50655240	-	ECE1	chr1	21546403	+
Frame-shit	ENST00000326648	ENST00000326648		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
5CDS-intron	ENST00000326648	ENST00000416172		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
5CDS-intron	ENST00000326648	ENST00000559364		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-3CDS	ENST00000416172	ENST00000326648		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-intron	ENST00000416172	ENST00000416172		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-intron	ENST00000416172	ENST00000559364		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-3CDS	ENST00000559364	ENST00000326648		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-intron	ENST00000559364	ENST00000416172		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-intron	ENST00000559364	ENST00000559364		ChiTaRS3.1			AI992209	ZNF609	chr15	64967160	-	ZNF609	chr15	64967793	-
intron-intron	ENST00000355528	ENST00000285930		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000355528	ENST00000489022		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000397466	ENST00000285930		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000397466	ENST00000489022		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000539345	ENST00000285930		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000539345	ENST00000489022		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000576691	ENST00000285930		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000576691	ENST00000489022		ChiTaRS3.1			BG009392	TBCD	chr17	80790096	-	AKR1B1	chr7	134134452	+
intron-intron	ENST00000508628	ENST00000390168		ChiTaRS3.1			DR979527	RNF213	chr17	78234658	-	H19	chr11	2016474	-
intron-intron	ENST00000456466	ENST00000390168		ChiTaRS3.1			DR979527	RNF213	chr17	78234658	-	H19	chr11	2016474	-
intron-intron	ENST00000582970	ENST00000390168		ChiTaRS3.1			DR979527	RNF213	chr17	78234658	-	H19	chr11	2016474	-
intron-intron	ENST00000319921	ENST00000390168		ChiTaRS3.1			DR979527	RNF213	chr17	78234658	-	H19	chr11	2016474	-
intron-intron	ENST00000336301	ENST00000390168		ChiTaRS3.1			DR979527	RNF213	chr17	78234658	-	H19	chr11	2016474	-
intron-intron	ENST00000427003	ENST00000390168		ChiTaRS3.1			DR979527	RNF213	chr17	78234658	-	H19	chr11	2016474	-
intron-intron	ENST00000316403	ENST00000545844		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000567887		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000372915		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000361689		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000539005		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000317713		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000564288		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000289893		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000536367		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000484793		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000602421		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000316403	ENST00000476350		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000545844		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000567887		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000372915		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000361689		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000539005		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000317713		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000564288		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000289893		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000536367		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000484793		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000602421		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000546343	ENST00000476350		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000545844		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000567887		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000372915		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000361689		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000539005		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000317713		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000564288		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000289893		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000536367		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000484793		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000602421		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000560366	ENST00000476350		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000545844		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000567887		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000372915		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000361689		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000539005		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000317713		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000564288		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000289893		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000536367		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000484793		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000602421		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000405140	ENST00000476350		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000545844		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000567887		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000372915		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000361689		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000539005		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000317713		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000564288		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000289893		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000536367		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000484793		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000602421		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000523500	ENST00000476350		ChiTaRS3.1			BF933391	CLU	chr8	27457337	+	MACF1	chr1	39809064	-
intron-intron	ENST00000585832	ENST00000267615		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000354313		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000556603		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000555495		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000556954		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000267615		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000354313		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000556603		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000555495		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000556954		ChiTaRS3.1			AI052363	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-3UTR	ENST00000340170	ENST00000567684		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000340170	ENST00000326152		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000263208	ENST00000567684		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000263208	ENST00000326152		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000541063	ENST00000567684		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000541063	ENST00000326152		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000546308	ENST00000567684		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000546308	ENST00000326152		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000464189	ENST00000567684		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-3UTR	ENST00000464189	ENST00000326152		ChiTaRS3.1			BM796617	HIRA	chr22	19389751	-	HSD11B2	chr16	67469639	+
intron-intron	ENST00000164024	ENST00000341520		ChiTaRS3.1			BF889346	CELSR3	chr3	48674878	-	NCKIPSD	chr3	48720158	-
intron-intron	ENST00000164024	ENST00000416649		ChiTaRS3.1			BF889346	CELSR3	chr3	48674878	-	NCKIPSD	chr3	48720158	-
intron-intron	ENST00000164024	ENST00000294129		ChiTaRS3.1			BF889346	CELSR3	chr3	48674878	-	NCKIPSD	chr3	48720158	-
intron-intron	ENST00000544264	ENST00000341520		ChiTaRS3.1			BF889346	CELSR3	chr3	48674878	-	NCKIPSD	chr3	48720158	-
intron-intron	ENST00000544264	ENST00000416649		ChiTaRS3.1			BF889346	CELSR3	chr3	48674878	-	NCKIPSD	chr3	48720158	-
intron-intron	ENST00000544264	ENST00000294129		ChiTaRS3.1			BF889346	CELSR3	chr3	48674878	-	NCKIPSD	chr3	48720158	-
intron-3UTR	ENST00000396625	ENST00000281187		ChiTaRS3.1			BF376481	COL4A4	chr2	227972900	+	VPS26B	chr11	134116898	+
intron-intron	ENST00000396625	ENST00000525095		ChiTaRS3.1			BF376481	COL4A4	chr2	227972900	+	VPS26B	chr11	134116898	+
intron-intron	ENST00000396625	ENST00000530402		ChiTaRS3.1			BF376481	COL4A4	chr2	227972900	+	VPS26B	chr11	134116898	+
intron-3UTR	ENST00000329662	ENST00000281187		ChiTaRS3.1			BF376481	COL4A4	chr2	227972900	+	VPS26B	chr11	134116898	+
intron-intron	ENST00000329662	ENST00000525095		ChiTaRS3.1			BF376481	COL4A4	chr2	227972900	+	VPS26B	chr11	134116898	+
intron-intron	ENST00000329662	ENST00000530402		ChiTaRS3.1			BF376481	COL4A4	chr2	227972900	+	VPS26B	chr11	134116898	+
intron-3CDS	ENST00000341744	ENST00000341744		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000341744	ENST00000395816		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000341744	ENST00000347215		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000341744	ENST00000265626		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000341744	ENST00000395814		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000341744	ENST00000472841		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-3CDS	ENST00000395816	ENST00000341744		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395816	ENST00000395816		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395816	ENST00000347215		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395816	ENST00000265626		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395816	ENST00000395814		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395816	ENST00000472841		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-3CDS	ENST00000347215	ENST00000341744		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000347215	ENST00000395816		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000347215	ENST00000347215		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000347215	ENST00000265626		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000347215	ENST00000395814		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000347215	ENST00000472841		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-3CDS	ENST00000265626	ENST00000341744		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000265626	ENST00000395816		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000265626	ENST00000347215		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000265626	ENST00000265626		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000265626	ENST00000395814		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000265626	ENST00000472841		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-3CDS	ENST00000395814	ENST00000341744		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395814	ENST00000395816		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395814	ENST00000347215		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395814	ENST00000265626		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395814	ENST00000395814		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000395814	ENST00000472841		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-3CDS	ENST00000472841	ENST00000341744		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000472841	ENST00000395816		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000472841	ENST00000347215		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000472841	ENST00000265626		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000472841	ENST00000395814		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000472841	ENST00000472841		ChiTaRS3.1			AA249792	PMEPA1	chr20	56227567	-	PMEPA1	chr20	56284590	-
intron-intron	ENST00000366812	ENST00000330978		ChiTaRS3.1			BQ017904	ACBD3	chr1	226374170	+	BOLA2	chr16	30096550	+
intron-intron	ENST00000464927	ENST00000330978		ChiTaRS3.1			BQ017904	ACBD3	chr1	226374170	+	BOLA2	chr16	30096550	+
Frame-shit	ENST00000310137	ENST00000310137		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000393979		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409372		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000443702		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409738		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000461478		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000393979	ENST00000310137		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000393979		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409372		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000443702		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409738		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000461478		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409372	ENST00000310137		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000393979		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409372		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000443702		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409738		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000461478		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000443702	ENST00000310137		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000393979		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409372		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000443702		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409738		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000461478		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409738	ENST00000310137		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000393979		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409372		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000443702		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409738		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000461478		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000461478	ENST00000310137		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000393979		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409372		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000443702		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409738		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000461478		ChiTaRS3.1			AI732744	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000264235	ENST00000481781		ChiTaRS3.1			CK819499	GSK3B	chr3	119542156	-	INS-IGF2	chr11	2181059	-
intron-intron	ENST00000264235	ENST00000397270		ChiTaRS3.1			CK819499	GSK3B	chr3	119542156	-	INS-IGF2	chr11	2181059	-
intron-intron	ENST00000316626	ENST00000481781		ChiTaRS3.1			CK819499	GSK3B	chr3	119542156	-	INS-IGF2	chr11	2181059	-
intron-intron	ENST00000316626	ENST00000397270		ChiTaRS3.1			CK819499	GSK3B	chr3	119542156	-	INS-IGF2	chr11	2181059	-
intron-intron	ENST00000473886	ENST00000481781		ChiTaRS3.1			CK819499	GSK3B	chr3	119542156	-	INS-IGF2	chr11	2181059	-
intron-intron	ENST00000473886	ENST00000397270		ChiTaRS3.1			CK819499	GSK3B	chr3	119542156	-	INS-IGF2	chr11	2181059	-
intron-3CDS	ENST00000228284	ENST00000228284		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000228284	ENST00000431469		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000228284	ENST00000552221		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000228284	ENST00000546611		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000431469	ENST00000228284		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000431469	ENST00000431469		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000431469	ENST00000552221		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000431469	ENST00000546611		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000552221	ENST00000228284		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000552221	ENST00000431469		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000552221	ENST00000552221		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000552221	ENST00000546611		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000546611	ENST00000228284		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-3CDS	ENST00000546611	ENST00000431469		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000546611	ENST00000552221		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000546611	ENST00000546611		ChiTaRS3.1			BE932290	SART3	chr12	108920057	+	SART3	chr12	108920189	-
intron-intron	ENST00000301067	ENST00000419277		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000428995		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000463066		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000443117		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000551196		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000480521		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000415247		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000484255		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000454805		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000549300		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000475500		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000374808		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000552158		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000488565		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000383224		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000551933		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000474244		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000422504		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000550806		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000494775		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000515317		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000550456		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000301067	ENST00000502285		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000419277		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000428995		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000463066		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000443117		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000551196		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000480521		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000415247		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000484255		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000454805		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000549300		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000475500		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000374808		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000552158		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000488565		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000383224		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000551933		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000474244		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000422504		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000550806		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000494775		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000515317		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000550456		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-intron	ENST00000549743	ENST00000502285		ChiTaRS3.1			BF931318	KMT2D	chr12	49445846	-	HLA-DPA1	chr6	4517434	-
intron-3CDS	ENST00000529631	ENST00000232125		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000529631	ENST00000477892		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000529631	ENST00000469967		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000529191	ENST00000232125		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000529191	ENST00000477892		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000529191	ENST00000469967		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000273550	ENST00000232125		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000273550	ENST00000477892		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000273550	ENST00000469967		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000526640	ENST00000232125		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000526640	ENST00000477892		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000526640	ENST00000469967		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000532601	ENST00000232125		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000532601	ENST00000477892		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
intron-3CDS	ENST00000532601	ENST00000469967		ChiTaRS3.1			AW020886	FTH1	chr11	61732036	-	FAM162A	chr3	122126184	+
5CDS-intron	ENST00000343674	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000343674	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000532868	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000528615	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000395574	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000543978	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000527911	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000456247	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000421244	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000318201	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
5CDS-intron	ENST00000454345	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000343674		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000532868		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000528615		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000395574		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000543978		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000527911		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000456247		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000421244		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000318201		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000454345		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-intron	ENST00000525434	ENST00000525434		ChiTaRS3.1			AW889506	DGKZ	chr11	46397926	+	DGKZ	chr11	46396812	+
intron-3CDS	ENST00000396392	ENST00000343150		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000396392	ENST00000340342		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3UTR	ENST00000396392	ENST00000495822		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-intron	ENST00000396392	ENST00000342020		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-3CDS	ENST00000396396	ENST00000343150		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-3CDS	ENST00000396396	ENST00000340342		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-3UTR	ENST00000396396	ENST00000495822		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-intron	ENST00000396396	ENST00000342020		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000604870	ENST00000343150		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000604870	ENST00000340342		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3UTR	ENST00000604870	ENST00000495822		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-intron	ENST00000604870	ENST00000342020		ChiTaRS3.1			BE836772	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-intron	ENST00000216181	ENST00000395135		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000395132		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000268059		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000354026		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000268058		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000565898		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000569477		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000569965		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000567543		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000435786		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000436891		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000564428		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000359928		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000563500		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000216181	ENST00000569161		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000395135		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000395132		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000268059		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000354026		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000268058		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000565898		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000569477		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000569965		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000567543		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000435786		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000436891		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000564428		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000359928		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000563500		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000475726	ENST00000569161		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000395135		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000395132		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000268059		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000354026		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000268058		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000565898		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000569477		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000569965		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000567543		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000435786		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000436891		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000564428		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000359928		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000563500		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-intron	ENST00000401701	ENST00000569161		ChiTaRS3.1			AW838641	MYH9	chr22	36697684	+	PML	chr15	74312713	+
intron-3CDS	ENST00000390168	ENST00000225964		ChiTaRS3.1			C16972	H19	chr11	2018944	-	COL1A1	chr17	48264044	-
Frame-shit	ENST00000301740	ENST00000301740		ChiTaRS3.1			BF592846	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BF592846	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BF592846	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BF592846	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
3UTR-3CDS	ENST00000341259	ENST00000406386		ChiTaRS3.1			BQ330487	SH2B3	chr12	111888843	+	TRIOBP	chr22	38120499	+
3UTR-intron	ENST00000341259	ENST00000407319		ChiTaRS3.1			BQ330487	SH2B3	chr12	111888843	+	TRIOBP	chr22	38120499	+
3UTR-intron	ENST00000341259	ENST00000403663		ChiTaRS3.1			BQ330487	SH2B3	chr12	111888843	+	TRIOBP	chr22	38120499	+
intron-3CDS	ENST00000538307	ENST00000406386		ChiTaRS3.1			BQ330487	SH2B3	chr12	111888843	+	TRIOBP	chr22	38120499	+
intron-intron	ENST00000538307	ENST00000407319		ChiTaRS3.1			BQ330487	SH2B3	chr12	111888843	+	TRIOBP	chr22	38120499	+
intron-intron	ENST00000538307	ENST00000403663		ChiTaRS3.1			BQ330487	SH2B3	chr12	111888843	+	TRIOBP	chr22	38120499	+
intron-intron	ENST00000546495	ENST00000323060		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
intron-3UTR	ENST00000546495	ENST00000263275		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
intron-intron	ENST00000546495	ENST00000544371		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000546760	ENST00000323060		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-3UTR	ENST00000546760	ENST00000263275		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000546760	ENST00000544371		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000552402	ENST00000323060		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-3UTR	ENST00000552402	ENST00000263275		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000552402	ENST00000544371		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000439424	ENST00000323060		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-3UTR	ENST00000439424	ENST00000263275		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000439424	ENST00000544371		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000552775	ENST00000323060		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-3UTR	ENST00000552775	ENST00000263275		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000552775	ENST00000544371		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000547709	ENST00000323060		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-3UTR	ENST00000547709	ENST00000263275		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
3UTR-intron	ENST00000547709	ENST00000544371		ChiTaRS3.1			BM874265	C17orf49	chr17	6920772	-	OPA3	chr19	46055317	+
intron-3CDS	ENST00000356663	ENST00000356663		ChiTaRS3.1			AI082342	TMEM259	chr19	1014471	+	TMEM259	chr19	1010357	-
intron-3UTR	ENST00000356663	ENST00000333175		ChiTaRS3.1			AI082342	TMEM259	chr19	1014471	+	TMEM259	chr19	1010357	-
intron-3CDS	ENST00000333175	ENST00000356663		ChiTaRS3.1			AI082342	TMEM259	chr19	1014471	+	TMEM259	chr19	1010357	-
intron-3UTR	ENST00000333175	ENST00000333175		ChiTaRS3.1			AI082342	TMEM259	chr19	1014471	+	TMEM259	chr19	1010357	-
In-frame	ENST00000417647	ENST00000287263		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
In-frame	ENST00000417647	ENST00000330843		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
In-frame	ENST00000417647	ENST00000522727		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
5CDS-intron	ENST00000417647	ENST00000523182		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
5CDS-intron	ENST00000417647	ENST00000524118		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
intron-3CDS	ENST00000523672	ENST00000287263		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
intron-3CDS	ENST00000523672	ENST00000330843		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
intron-3CDS	ENST00000523672	ENST00000522727		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
intron-intron	ENST00000523672	ENST00000523182		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
intron-intron	ENST00000523672	ENST00000524118		ChiTaRS3.1			BE935199	IK	chr5	140039742	+	RAB11FIP1	chr8	37734800	+
intron-3CDS	ENST00000430223	ENST00000430223		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-3CDS	ENST00000430223	ENST00000341166		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-5UTR	ENST00000430223	ENST00000520545		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-3CDS	ENST00000341166	ENST00000430223		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-3CDS	ENST00000341166	ENST00000341166		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-5UTR	ENST00000341166	ENST00000520545		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-3CDS	ENST00000520545	ENST00000430223		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-3CDS	ENST00000520545	ENST00000341166		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
intron-5UTR	ENST00000520545	ENST00000520545		ChiTaRS3.1			AI081252	NIPAL2	chr8	99264781	-	NIPAL2	chr8	99234806	+
5CDS-3UTR	ENST00000330137	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000330137	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000330137	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000330137	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000330137	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000330137	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000580541	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000580541	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000580541	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000580541	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000580541	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000580541	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000578105	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000578105	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000578105	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000578105	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000578105	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000578105	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000583927	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000583927	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000583927	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000583927	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000583927	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000583927	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000581068	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000581068	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000581068	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000581068	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000581068	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000581068	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000437036	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000437036	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000437036	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000437036	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000437036	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-intron	ENST00000437036	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000583380	ENST00000313949		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000583380	ENST00000371098		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000583380	ENST00000371075		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000583380	ENST00000371100		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000371099		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000371102		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000583380	ENST00000464624		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000306120		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000371095		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000371085		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000354359		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000265620		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000306090		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000583380	ENST00000371081		ChiTaRS3.1			BU783722	SKA2	chr17	57232489	-	GNAS	chr20	57470666	+
intron-3UTR	ENST00000448083	ENST00000225394		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000448083	ENST00000394869		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000448083	ENST00000581348		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000448083	ENST00000579937		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000312562	ENST00000225394		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000312562	ENST00000394869		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000312562	ENST00000581348		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000312562	ENST00000579937		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000531493	ENST00000225394		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000531493	ENST00000394869		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000531493	ENST00000581348		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000531493	ENST00000579937		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000532401	ENST00000225394		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-3UTR	ENST00000532401	ENST00000394869		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000532401	ENST00000581348		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
intron-intron	ENST00000532401	ENST00000579937		ChiTaRS3.1			CB113150	FOSL1	chr11	65667831	-	GIT1	chr17	27900779	-
Frame-shit	ENST00000053867	ENST00000053867		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
5CDS-intron	ENST00000053867	ENST00000589265		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
5CDS-intron	ENST00000053867	ENST00000589923		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
Frame-shit	ENST00000589265	ENST00000053867		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
5CDS-intron	ENST00000589265	ENST00000589265		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
5CDS-intron	ENST00000589265	ENST00000589923		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
intron-3CDS	ENST00000589923	ENST00000053867		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
intron-intron	ENST00000589923	ENST00000589265		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
intron-intron	ENST00000589923	ENST00000589923		ChiTaRS3.1			AW848872	GRN	chr17	42427084	-	GRN	chr17	42427832	+
5CDS-intron	ENST00000326840	ENST00000518740		ChiTaRS3.1			AA460989	DCBLD2	chr3	98619962	-	TXNRD3	chr3	126366141	-
5CDS-intron	ENST00000326857	ENST00000518740		ChiTaRS3.1			AA460989	DCBLD2	chr3	98619962	-	TXNRD3	chr3	126366141	-
intron-intron	ENST00000469648	ENST00000518740		ChiTaRS3.1			AA460989	DCBLD2	chr3	98619962	-	TXNRD3	chr3	126366141	-
intron-3CDS	ENST00000310473	ENST00000310473		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-3CDS	ENST00000310473	ENST00000536983		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-intron	ENST00000310473	ENST00000542615		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-3CDS	ENST00000536983	ENST00000310473		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-3CDS	ENST00000536983	ENST00000536983		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-intron	ENST00000536983	ENST00000542615		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-3CDS	ENST00000542615	ENST00000310473		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-3CDS	ENST00000542615	ENST00000536983		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-intron	ENST00000542615	ENST00000542615		ChiTaRS3.1			BE707055	UCP2	chr11	73687978	+	UCP2	chr11	73687788	-
intron-3CDS	ENST00000225983	ENST00000225983		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000225983	ENST00000393622		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000225983	ENST00000336057		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000225983	ENST00000586802		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000393622	ENST00000225983		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000393622	ENST00000393622		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000393622	ENST00000336057		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000393622	ENST00000586802		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000336057	ENST00000225983		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000336057	ENST00000393622		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000336057	ENST00000336057		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000336057	ENST00000586802		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000586802	ENST00000225983		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000586802	ENST00000393622		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000586802	ENST00000336057		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
intron-3CDS	ENST00000586802	ENST00000586802		ChiTaRS3.1			BE844021	HDAC5	chr17	42158227	+	HDAC5	chr17	42160956	-
5CDS-intron	ENST00000534358	ENST00000262809		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000534358	ENST00000596124		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000262809		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000596124		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000262809		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000596124		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000262809		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000596124		ChiTaRS3.1			AF272374	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			AW901636	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000534358	ENST00000544085		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000389506	ENST00000544085		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000354520	ENST00000395146		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000354520	ENST00000307808		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
In-frame	ENST00000354520	ENST00000544085		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
intron-3CDS	ENST00000420751	ENST00000544085		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			DQ451148	KMT2A	chr11	118353211	+	AFF1	chr4	88012943	+
5CDS-3UTR	ENST00000251413	ENST00000251413		ChiTaRS3.1			CN275550	TUBG1	chr17	40766651	-	TUBG1	chr17	40767093	+
intron-3CDS	ENST00000294304	ENST00000294304		ChiTaRS3.1			BG178813	LRP5	chr11	68197043	-	LRP5	chr11	68197148	+
intron-intron	ENST00000294304	ENST00000529481		ChiTaRS3.1			BG178813	LRP5	chr11	68197043	-	LRP5	chr11	68197148	+
intron-3CDS	ENST00000529481	ENST00000294304		ChiTaRS3.1			BG178813	LRP5	chr11	68197043	-	LRP5	chr11	68197148	+
intron-intron	ENST00000529481	ENST00000529481		ChiTaRS3.1			BG178813	LRP5	chr11	68197043	-	LRP5	chr11	68197148	+
intron-intron	ENST00000268035	ENST00000268035		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000268035	ENST00000558762		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000268035	ENST00000560432		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000558762	ENST00000268035		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000558762	ENST00000558762		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000558762	ENST00000560432		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000560432	ENST00000268035		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000560432	ENST00000558762		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-intron	ENST00000560432	ENST00000560432		ChiTaRS3.1			BE159611	IGF1R	chr15	99199967	-	IGF1R	chr15	99199116	+
intron-3UTR	ENST00000339818	ENST00000398081		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000339818	ENST00000468090		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000339818	ENST00000291565		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000339818	ENST00000327574		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000339818	ENST00000476313		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000339818	ENST00000467908		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000496321	ENST00000398081		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000496321	ENST00000468090		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000496321	ENST00000291565		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000496321	ENST00000327574		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000496321	ENST00000476313		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000496321	ENST00000467908		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000397956	ENST00000398081		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000397956	ENST00000468090		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000397956	ENST00000291565		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000397956	ENST00000327574		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000397956	ENST00000476313		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000397956	ENST00000467908		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000325223	ENST00000398081		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000325223	ENST00000468090		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000325223	ENST00000291565		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-3UTR	ENST00000325223	ENST00000327574		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000325223	ENST00000476313		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
intron-intron	ENST00000325223	ENST00000467908		ChiTaRS3.1			L25496	C21orf2	chr21	45749570	+	PDXK	chr21	45157177	+
In-frame	ENST00000534358	ENST00000252699		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
In-frame	ENST00000534358	ENST00000424234		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
5CDS-intron	ENST00000534358	ENST00000390009		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
5CDS-intron	ENST00000534358	ENST00000497637		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
In-frame	ENST00000389506	ENST00000252699		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
In-frame	ENST00000389506	ENST00000424234		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
5CDS-intron	ENST00000389506	ENST00000390009		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
5CDS-intron	ENST00000389506	ENST00000497637		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
In-frame	ENST00000354520	ENST00000252699		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
In-frame	ENST00000354520	ENST00000424234		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
5CDS-intron	ENST00000354520	ENST00000390009		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
5CDS-intron	ENST00000354520	ENST00000497637		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
intron-3CDS	ENST00000420751	ENST00000252699		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
intron-3CDS	ENST00000420751	ENST00000424234		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
intron-intron	ENST00000420751	ENST00000390009		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
intron-intron	ENST00000420751	ENST00000497637		ChiTaRS3.1			FM165195	KMT2A	chr11	118353210	+	ACTN4	chr19	39191238	+
Frame-shit	ENST00000324856	ENST00000324856		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000324856	ENST00000457599		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000324856	ENST00000374152		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000324856	ENST00000540690		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000457599	ENST00000324856		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000457599	ENST00000457599		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000457599	ENST00000374152		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000457599	ENST00000540690		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000374152	ENST00000324856		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000374152	ENST00000457599		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
In-frame	ENST00000374152	ENST00000374152		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000374152	ENST00000540690		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000540690	ENST00000324856		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000540690	ENST00000457599		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000540690	ENST00000374152		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
Frame-shit	ENST00000540690	ENST00000540690		ChiTaRS3.1			CV314170	ARID1A	chr1	27106617	-	ARID1A	chr1	27106589	+
intron-intron	ENST00000340170	ENST00000340170		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000340170	ENST00000263208		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000340170	ENST00000541063		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000340170	ENST00000546308		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000340170	ENST00000464189		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000263208	ENST00000340170		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000263208	ENST00000263208		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000263208	ENST00000541063		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000263208	ENST00000546308		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000263208	ENST00000464189		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000541063	ENST00000340170		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000541063	ENST00000263208		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000541063	ENST00000541063		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000541063	ENST00000546308		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000541063	ENST00000464189		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000546308	ENST00000340170		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000546308	ENST00000263208		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000546308	ENST00000541063		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000546308	ENST00000546308		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000546308	ENST00000464189		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000464189	ENST00000340170		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000464189	ENST00000263208		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000464189	ENST00000541063		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000464189	ENST00000546308		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
intron-intron	ENST00000464189	ENST00000464189		ChiTaRS3.1			BF358759	HIRA	chr22	19385821	+	HIRA	chr22	19385884	-
Frame-shit	ENST00000233630	ENST00000406697		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
Frame-shit	ENST00000233630	ENST00000328916		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
Frame-shit	ENST00000233630	ENST00000360817		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
Frame-shit	ENST00000233630	ENST00000402681		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
5CDS-3UTR	ENST00000233630	ENST00000495061		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
5UTR-3CDS	ENST00000480844	ENST00000406697		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
5UTR-3CDS	ENST00000480844	ENST00000328916		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
5UTR-3CDS	ENST00000480844	ENST00000360817		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
5UTR-3CDS	ENST00000480844	ENST00000402681		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
5UTR-3UTR	ENST00000480844	ENST00000495061		ChiTaRS3.1			BE939795	PCGF1	chr2	74733312	-	C1S	chr12	7177505	-
intron-3CDS	ENST00000448637	ENST00000373062		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-intron	ENST00000448637	ENST00000462812		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-3CDS	ENST00000312675	ENST00000373062		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-intron	ENST00000312675	ENST00000462812		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-3CDS	ENST00000543006	ENST00000373062		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-intron	ENST00000543006	ENST00000462812		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-3CDS	ENST00000471917	ENST00000373062		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
intron-intron	ENST00000471917	ENST00000462812		ChiTaRS3.1			BE837684	LPP	chr3	187928878	+	GNL2	chr1	38040320	-
In-frame	ENST00000355481	ENST00000355481		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000355481	ENST00000360985		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000355481	ENST00000359596		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000360985	ENST00000355481		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000360985	ENST00000360985		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000360985	ENST00000359596		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000359596	ENST00000355481		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000359596	ENST00000360985		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
In-frame	ENST00000359596	ENST00000359596		ChiTaRS3.1			AI651620	RYR1	chr19	38956781	-	RYR1	chr19	38960076	-
intron-intron	ENST00000175091	ENST00000292431		ChiTaRS3.1			BG011582	LAPTM4A	chr2	20251291	-	NACC1	chr19	13248184	-
5CDS-intron	ENST00000053867	ENST00000426820		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369559		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000369554		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000369558		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369561		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369555		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000340480		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369553		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000406344		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000426820		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369559		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000369554		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000369558		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369561		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369555		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000340480		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369553		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000406344		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000426820		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369559		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000369554		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000369558		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369561		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369555		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000340480		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369553		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000406344		ChiTaRS3.1			AW841772	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000426820		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369559		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000369554		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000369558		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369561		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369555		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000340480		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000053867	ENST00000369553		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000053867	ENST00000406344		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000426820		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369559		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000369554		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000369558		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369561		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369555		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000340480		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-intron	ENST00000589265	ENST00000369553		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5CDS-3UTR	ENST00000589265	ENST00000406344		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000426820		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369559		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000369554		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000369558		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369561		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369555		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000340480		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-intron	ENST00000589923	ENST00000369553		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
3UTR-3UTR	ENST00000589923	ENST00000406344		ChiTaRS3.1			AW841754	GRN	chr17	42429040	-	HIPK1	chr1	114518412	-
5UTR-5UTR	ENST00000502976	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000502976	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000502976	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000502976	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000502976	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000422453	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000422453	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000422453	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000422453	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000422453	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000451728	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000451728	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000451728	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000451728	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000451728	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000446936	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000446936	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000446936	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000446936	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000446936	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000500450	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000500450	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000500450	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000500450	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000500450	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000504813	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000504813	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000504813	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000504813	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000504813	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000441626	ENST00000332776		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000441626	ENST00000574788		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000441626	ENST00000304328		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000441626	ENST00000250066		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000441626	ENST00000572429		ChiTaRS3.1			AY624557	CNBP	chr3	128902618	-	USP6	chr17	5033229	+
Frame-shit	ENST00000450943	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000450943	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000450943	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000354888	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000354888	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393108	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393108	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393110	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393110	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393106	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393106	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393107	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393107	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000409811	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000409811	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000230419		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000349241		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000345201		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000352931		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000481273		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000425223	ENST00000476760		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000425223	ENST00000471863		ChiTaRS3.1			BP288114	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
In-frame	ENST00000592782	ENST00000592782		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
In-frame	ENST00000592782	ENST00000258960		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
5CDS-intron	ENST00000592782	ENST00000590114		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
In-frame	ENST00000258960	ENST00000592782		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
In-frame	ENST00000258960	ENST00000258960		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
5CDS-intron	ENST00000258960	ENST00000590114		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
intron-3CDS	ENST00000590114	ENST00000592782		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
intron-3CDS	ENST00000590114	ENST00000258960		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
intron-intron	ENST00000590114	ENST00000590114		ChiTaRS3.1			BE930577	NMT1	chr17	43182289	+	NMT1	chr17	43180377	+
In-frame	ENST00000263398	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000263398	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000263398	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000263398	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000526025	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000526025	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000526025	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000526025	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000449691	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000449691	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000449691	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000449691	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000360158	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000360158	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000360158	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000360158	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000415148	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000415148	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000415148	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000415148	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000437706	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000437706	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000437706	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000437706	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000433354	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000433354	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000433354	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000433354	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000428726	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000428726	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000428726	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000428726	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000526669	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000526669	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000526669	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000526669	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000433892	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000433892	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000433892	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000433892	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000278386	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000278386	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000278386	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000278386	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000434472	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000434472	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000434472	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000434472	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000352818	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000352818	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
In-frame	ENST00000352818	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
5CDS-intron	ENST00000352818	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
intron-3CDS	ENST00000528922	ENST00000448838		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
intron-3CDS	ENST00000528922	ENST00000227868		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
intron-3CDS	ENST00000528922	ENST00000430469		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
intron-intron	ENST00000528922	ENST00000477173		ChiTaRS3.1			DA471107	CD44	chr11	35160921	+	PDHX	chr11	34952950	+
intron-3CDS	ENST00000287263	ENST00000287263		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000287263	ENST00000330843		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000287263	ENST00000522727		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000287263	ENST00000523182		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000287263	ENST00000524118		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000330843	ENST00000287263		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000330843	ENST00000330843		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000330843	ENST00000522727		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000330843	ENST00000523182		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000330843	ENST00000524118		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000522727	ENST00000287263		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000522727	ENST00000330843		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000522727	ENST00000522727		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000522727	ENST00000523182		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000522727	ENST00000524118		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000523182	ENST00000287263		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000523182	ENST00000330843		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000523182	ENST00000522727		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000523182	ENST00000523182		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000523182	ENST00000524118		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000524118	ENST00000287263		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000524118	ENST00000330843		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000524118	ENST00000522727		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000524118	ENST00000523182		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-intron	ENST00000524118	ENST00000524118		ChiTaRS3.1			CA314282	RAB11FIP1	chr8	37734880	+	RAB11FIP1	chr8	37734834	-
intron-3CDS	ENST00000444610	ENST00000343470		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000444610	ENST00000452476		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000218981	ENST00000343470		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000218981	ENST00000452476		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000280056	ENST00000343470		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000280056	ENST00000452476		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000490949	ENST00000343470		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000490949	ENST00000452476		ChiTaRS3.1			BF800135	DHRS12	chr13	52358796	+	LYAR	chr4	4283592	+
intron-3CDS	ENST00000344691	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000344691	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000344691	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000344691	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000344691	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000344691	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000344691	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000344691	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000325074	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000325074	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000325074	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000325074	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000325074	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000325074	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000325074	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000325074	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000437180	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000437180	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000437180	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000437180	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000437180	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000437180	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000437180	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000437180	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000300305	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000300305	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000300305	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000300305	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000300305	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000300305	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000300305	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000300305	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000399240	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000399240	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000399240	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000399240	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000399240	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000399240	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000399240	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000399240	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000486278	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000486278	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000486278	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000486278	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000486278	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000486278	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000486278	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000486278	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000494829	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000494829	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000494829	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000494829	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000494829	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000494829	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000494829	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000494829	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000358356	ENST00000281708		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000358356	ENST00000603548		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-3CDS	ENST00000358356	ENST00000604872		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000358356	ENST00000296555		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000358356	ENST00000263981		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000358356	ENST00000393956		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000358356	ENST00000603841		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
intron-intron	ENST00000358356	ENST00000604095		ChiTaRS3.1			DQ177302	RUNX1	chr21	36219767	-	FBXW7	chr4	153332704	+
In-frame	ENST00000329138	ENST00000329138		ChiTaRS3.1			BF155256	HGS	chr17	79660548	+	HGS	chr17	79658522	-
intron-3UTR	ENST00000290231	ENST00000262061		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000549043		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000552218		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000553231		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000552362		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000455864		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000416254		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000549116		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000551779		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000548281		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
intron-intron	ENST00000290231	ENST00000548753		ChiTaRS3.1			BE171249	NCOA5	chr20	44692009	+	COPZ1	chr12	54745266	-
Frame-shit	ENST00000474629	ENST00000474629		ChiTaRS3.1			AK026003	PARP14	chr3	122439228	+	PARP14	chr3	122419717	+
5CDS-intron	ENST00000474629	ENST00000475640		ChiTaRS3.1			AK026003	PARP14	chr3	122439228	+	PARP14	chr3	122419717	+
3UTR-3CDS	ENST00000475640	ENST00000474629		ChiTaRS3.1			AK026003	PARP14	chr3	122439228	+	PARP14	chr3	122419717	+
3UTR-intron	ENST00000475640	ENST00000475640		ChiTaRS3.1			AK026003	PARP14	chr3	122439228	+	PARP14	chr3	122419717	+
In-frame	ENST00000353024	ENST00000369291		ChiTaRS3.1			CB137162	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
In-frame	ENST00000392712	ENST00000369291		ChiTaRS3.1			CB137162	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
In-frame	ENST00000368849	ENST00000369291		ChiTaRS3.1			CB137162	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
In-frame	ENST00000368848	ENST00000369291		ChiTaRS3.1			CB137162	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
5UTR-3CDS	ENST00000538902	ENST00000369291		ChiTaRS3.1			CB137162	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
intron-3CDS	ENST00000518836	ENST00000360565		ChiTaRS3.1			BF820693	EBF1	chr5	158139192	-	SCAF1	chr19	50161135	-
intron-3CDS	ENST00000313708	ENST00000360565		ChiTaRS3.1			BF820693	EBF1	chr5	158139192	-	SCAF1	chr19	50161135	-
intron-3CDS	ENST00000380654	ENST00000360565		ChiTaRS3.1			BF820693	EBF1	chr5	158139192	-	SCAF1	chr19	50161135	-
intron-3CDS	ENST00000517373	ENST00000360565		ChiTaRS3.1			BF820693	EBF1	chr5	158139192	-	SCAF1	chr19	50161135	-
5CDS-5UTR	ENST00000534358	ENST00000437099		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000323816		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000432992		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000540214		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000585266		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000580865		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000583882		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000542249		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000396115		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000579158		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000578655		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000437099		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000323816		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000432992		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000540214		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000585266		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000580865		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000583882		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000542249		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000396115		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000579158		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000578655		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000437099		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000323816		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000432992		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000540214		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000585266		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000354520	ENST00000580865		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000354520	ENST00000583882		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000542249		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000396115		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000579158		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000578655		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000437099		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000323816		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000432992		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000540214		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000585266		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000420751	ENST00000580865		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000420751	ENST00000583882		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000542249		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000396115		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000579158		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000578655		ChiTaRS3.1			AF231999	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-3UTR	ENST00000355653	ENST00000401419		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000355653	ENST00000397129		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000355653	ENST00000404802		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000355653	ENST00000341116		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000355653	ENST00000429360		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000355653	ENST00000404393		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000355653	ENST00000397225		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000401419		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000397129		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000404802		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000341116		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000429360		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000404393		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000587173	ENST00000397225		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000401419		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000397129		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000404802		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000341116		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000429360		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000404393		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-3UTR	ENST00000420567	ENST00000397225		ChiTaRS3.1			BF516432	VAT1	chr17	41166687	+	MPST	chr22	37425736	+
intron-intron	ENST00000397410	ENST00000251582		ChiTaRS3.1			BE551916	AKAP8L	chr19	15491393	+	ADAMTS2	chr5	178662351	-
intron-intron	ENST00000397410	ENST00000274609		ChiTaRS3.1			BE551916	AKAP8L	chr19	15491393	+	ADAMTS2	chr5	178662351	-
intron-intron	ENST00000595465	ENST00000251582		ChiTaRS3.1			BE551916	AKAP8L	chr19	15491393	+	ADAMTS2	chr5	178662351	-
intron-intron	ENST00000595465	ENST00000274609		ChiTaRS3.1			BE551916	AKAP8L	chr19	15491393	+	ADAMTS2	chr5	178662351	-
intron-intron	ENST00000595879	ENST00000251582		ChiTaRS3.1			BE551916	AKAP8L	chr19	15491393	+	ADAMTS2	chr5	178662351	-
intron-intron	ENST00000595879	ENST00000274609		ChiTaRS3.1			BE551916	AKAP8L	chr19	15491393	+	ADAMTS2	chr5	178662351	-
intron-3CDS	ENST00000329214	ENST00000329214		ChiTaRS3.1			AI917713	CCDC137	chr17	79637252	-	CCDC137	chr17	79639729	-
5UTR-intron	ENST00000541222	ENST00000390168		ChiTaRS3.1			BP320500	RAD23A	chr19	13059047	+	H19	chr11	2018646	-
5CDS-intron	ENST00000316856	ENST00000390168		ChiTaRS3.1			BP320500	RAD23A	chr19	13059047	+	H19	chr11	2018646	-
5CDS-intron	ENST00000586534	ENST00000390168		ChiTaRS3.1			BP320500	RAD23A	chr19	13059047	+	H19	chr11	2018646	-
5CDS-intron	ENST00000592268	ENST00000390168		ChiTaRS3.1			BP320500	RAD23A	chr19	13059047	+	H19	chr11	2018646	-
3UTR-intron	ENST00000588826	ENST00000390168		ChiTaRS3.1			BP320500	RAD23A	chr19	13059047	+	H19	chr11	2018646	-
3UTR-3CDS	ENST00000358024	ENST00000358024		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000358024	ENST00000545499		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000358024	ENST00000495538		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000358024	ENST00000330675		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000358024	ENST00000329800		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000545499	ENST00000358024		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000545499	ENST00000545499		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000545499	ENST00000495538		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000545499	ENST00000330675		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000545499	ENST00000329800		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000495538	ENST00000358024		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000495538	ENST00000545499		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000495538	ENST00000495538		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000495538	ENST00000330675		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000495538	ENST00000329800		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000330675	ENST00000358024		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000330675	ENST00000545499		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000330675	ENST00000495538		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000330675	ENST00000330675		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000330675	ENST00000329800		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000329800	ENST00000358024		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3CDS	ENST00000329800	ENST00000545499		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000329800	ENST00000495538		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000329800	ENST00000330675		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
3UTR-3UTR	ENST00000329800	ENST00000329800		ChiTaRS3.1			BM466472	TMCC2	chr1	205241298	+	TMCC2	chr1	205240322	+
intron-intron	ENST00000578844	ENST00000578844		ChiTaRS3.1			CA450554	MIR5095	chr20	55953374	-	MIR5095	chr20	55953262	+
intron-3CDS	ENST00000295133	ENST00000405088		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000295133	ENST00000471899		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000295133	ENST00000297508		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-3CDS	ENST00000521871	ENST00000405088		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000521871	ENST00000471899		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000521871	ENST00000297508		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-3CDS	ENST00000520530	ENST00000405088		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000520530	ENST00000471899		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000520530	ENST00000297508		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-3CDS	ENST00000520186	ENST00000405088		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000520186	ENST00000471899		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
intron-5UTR	ENST00000520186	ENST00000297508		ChiTaRS3.1			BE939832	FBXO41	chr2	73490939	+	MICALL2	chr7	1474306	-
3UTR-3UTR	ENST00000602402	ENST00000602402		ChiTaRS3.1			AA533636	DNAJC3	chr13	96445339	+	DNAJC3	chr13	96445492	-
3UTR-intron	ENST00000602402	ENST00000376795		ChiTaRS3.1			AA533636	DNAJC3	chr13	96445339	+	DNAJC3	chr13	96445492	-
intron-3UTR	ENST00000376795	ENST00000602402		ChiTaRS3.1			AA533636	DNAJC3	chr13	96445339	+	DNAJC3	chr13	96445492	-
intron-intron	ENST00000376795	ENST00000376795		ChiTaRS3.1			AA533636	DNAJC3	chr13	96445339	+	DNAJC3	chr13	96445492	-
intron-intron	ENST00000425217	ENST00000262519		ChiTaRS3.1			BI000419	KSR2	chr12	118108741	+	SETD1A	chr16	30987844	-
intron-intron	ENST00000339824	ENST00000262519		ChiTaRS3.1			BI000419	KSR2	chr12	118108741	+	SETD1A	chr16	30987844	-
intron-intron	ENST00000302438	ENST00000262519		ChiTaRS3.1			BI000419	KSR2	chr12	118108741	+	SETD1A	chr16	30987844	-
intron-intron	ENST00000545002	ENST00000262519		ChiTaRS3.1			BI000419	KSR2	chr12	118108741	+	SETD1A	chr16	30987844	-
intron-3CDS	ENST00000368395	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368395	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368395	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000338684	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000338684	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000338684	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000438413	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000438413	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000438413	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000457295	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000457295	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000457295	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000462215	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000462215	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000462215	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000368392	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368392	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368392	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000368393	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368393	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368393	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000368390	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368390	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368390	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000368396	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368396	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368396	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000343256	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000343256	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000343256	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000368398	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368398	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368398	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000368389	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000368389	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000368389	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000342482	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000342482	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000342482	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-3CDS	ENST00000337604	ENST00000368395		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000338684		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000438413		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000457295		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-5UTR	ENST00000337604	ENST00000462215		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000368392		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000368393		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000368390		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000368396		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000343256		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000368398		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000368389		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000342482		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
intron-intron	ENST00000337604	ENST00000337604		ChiTaRS3.1			BF759082	MUC1	chr1	155160832	+	MUC1	chr1	155160974	-
Frame-shit	ENST00000344749	ENST00000420696		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000401534		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000559240		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000367897		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000540236		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000344749	ENST00000560641		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000344749	ENST00000474046		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000344749	ENST00000485769		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000344749	ENST00000540246		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000420696		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000401534		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000559240		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000367897		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000540236		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000262965	ENST00000560641		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000262965	ENST00000474046		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000262965	ENST00000485769		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000262965	ENST00000540246		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000420696		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000401534		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000559240		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000367897		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000540236		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000453954	ENST00000560641		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000453954	ENST00000474046		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000453954	ENST00000485769		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000453954	ENST00000540246		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000420696		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000401534		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000559240		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000367897		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000540236		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000395423	ENST00000560641		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000395423	ENST00000474046		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000395423	ENST00000485769		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000395423	ENST00000540246		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000420696		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000401534		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000559240		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000367897		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000540236		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000588136	ENST00000560641		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000588136	ENST00000474046		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000588136	ENST00000485769		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000588136	ENST00000540246		ChiTaRS3.1			AY311345	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF272371	KMT2A	chr11	118359411	+	KMT2A	chr11	118352667	-
intron-3UTR	ENST00000338368	ENST00000338368		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-3UTR	ENST00000338368	ENST00000314191		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-5UTR	ENST00000338368	ENST00000523565		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-3UTR	ENST00000314191	ENST00000338368		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-3UTR	ENST00000314191	ENST00000314191		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-5UTR	ENST00000314191	ENST00000523565		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-3UTR	ENST00000523565	ENST00000338368		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-3UTR	ENST00000523565	ENST00000314191		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-5UTR	ENST00000523565	ENST00000523565		ChiTaRS3.1			BE548041	PRKDC	chr8	48685753	+	PRKDC	chr8	48685732	-
intron-3CDS	ENST00000290949	ENST00000290949		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000290949	ENST00000540149		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000290949	ENST00000602876		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-5UTR	ENST00000290949	ENST00000567694		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000540149	ENST00000290949		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000540149	ENST00000540149		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000540149	ENST00000602876		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-5UTR	ENST00000540149	ENST00000567694		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000602876	ENST00000290949		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000602876	ENST00000540149		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000602876	ENST00000602876		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-5UTR	ENST00000602876	ENST00000567694		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000567694	ENST00000290949		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000567694	ENST00000540149		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-3CDS	ENST00000567694	ENST00000602876		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-5UTR	ENST00000567694	ENST00000567694		ChiTaRS3.1			BE693983	ATP6V0D1	chr16	67472759	-	ATP6V0D1	chr16	67472926	+
intron-intron	ENST00000388742	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388742	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388742	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388742	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388742	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388742	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388742	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000340726	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388740	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000303824	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388741	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000388743	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000388742		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000340726		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000388740		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000303824		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000388741		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000388743		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
intron-intron	ENST00000419131	ENST00000419131		ChiTaRS3.1			BI017781	EYA1	chr8	72229926	+	EYA1	chr8	72211280	+
Frame-shit	ENST00000367602	ENST00000367602		ChiTaRS3.1			CF124944	QSOX1	chr1	180124115	-	QSOX1	chr1	180151317	+
Frame-shit	ENST00000367602	ENST00000367600		ChiTaRS3.1			CF124944	QSOX1	chr1	180124115	-	QSOX1	chr1	180151317	+
Frame-shit	ENST00000367600	ENST00000367602		ChiTaRS3.1			CF124944	QSOX1	chr1	180124115	-	QSOX1	chr1	180151317	+
Frame-shit	ENST00000367600	ENST00000367600		ChiTaRS3.1			CF124944	QSOX1	chr1	180124115	-	QSOX1	chr1	180151317	+
intron-5UTR	ENST00000435607	ENST00000435607		ChiTaRS3.1			CD608177	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000435607	ENST00000578147		ChiTaRS3.1			CD608177	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000435607		ChiTaRS3.1			CD608177	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000578147		ChiTaRS3.1			CD608177	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
3UTR-3CDS	ENST00000316097	ENST00000344417		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
3UTR-3CDS	ENST00000316097	ENST00000359073		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
3UTR-intron	ENST00000316097	ENST00000472693		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
intron-3CDS	ENST00000414057	ENST00000344417		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
intron-3CDS	ENST00000414057	ENST00000359073		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
intron-intron	ENST00000414057	ENST00000472693		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
3UTR-3CDS	ENST00000409472	ENST00000344417		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
3UTR-3CDS	ENST00000409472	ENST00000359073		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
3UTR-intron	ENST00000409472	ENST00000472693		ChiTaRS3.1			CB067790	SCAMP4	chr19	1924971	+	C7orf26	chr7	6647763	+
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM771193	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM771193	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM771193	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM771193	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835127	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-5UTR	ENST00000534358	ENST00000437099		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000323816		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000432992		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000540214		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000585266		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000580865		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000583882		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000542249		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000396115		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000579158		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000578655		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000437099		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000323816		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000432992		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000540214		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000585266		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000580865		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000583882		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000542249		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000396115		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000579158		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000578655		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000437099		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000323816		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000432992		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000540214		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000585266		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000354520	ENST00000580865		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000354520	ENST00000583882		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000542249		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000396115		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000579158		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000578655		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000437099		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000323816		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000432992		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000540214		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000585266		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-intron	ENST00000420751	ENST00000580865		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-intron	ENST00000420751	ENST00000583882		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000542249		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000396115		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000579158		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000578655		ChiTaRS3.1			AF231997	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
intron-3CDS	ENST00000413658	ENST00000315323		ChiTaRS3.1			CN408382	ZNF3	chr7	99672981	-	FZD2	chr17	42636342	+
intron-3CDS	ENST00000424697	ENST00000315323		ChiTaRS3.1			CN408382	ZNF3	chr7	99672981	-	FZD2	chr17	42636342	+
intron-3CDS	ENST00000303915	ENST00000315323		ChiTaRS3.1			CN408382	ZNF3	chr7	99672981	-	FZD2	chr17	42636342	+
intron-3CDS	ENST00000299667	ENST00000315323		ChiTaRS3.1			CN408382	ZNF3	chr7	99672981	-	FZD2	chr17	42636342	+
intron-intron	ENST00000541194	ENST00000457752		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-3UTR	ENST00000541194	ENST00000334000		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000541194	ENST00000505778		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000541194	ENST00000515640		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000541194	ENST00000397835		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000537928	ENST00000457752		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-3UTR	ENST00000537928	ENST00000334000		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000537928	ENST00000505778		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000537928	ENST00000515640		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000537928	ENST00000397835		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000378555	ENST00000457752		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-3UTR	ENST00000378555	ENST00000334000		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000378555	ENST00000505778		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000378555	ENST00000515640		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000378555	ENST00000397835		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000322985	ENST00000457752		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-3UTR	ENST00000322985	ENST00000334000		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000322985	ENST00000505778		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000322985	ENST00000515640		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000322985	ENST00000397835		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000465001	ENST00000457752		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-3UTR	ENST00000465001	ENST00000334000		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000465001	ENST00000505778		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000465001	ENST00000515640		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-intron	ENST00000465001	ENST00000397835		ChiTaRS3.1			CN290660	PODXL	chr7	131241165	-	C5orf38	chr5	2755244	+
intron-3CDS	ENST00000359139	ENST00000456435		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000318967		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000435409		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000512605		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000359139	ENST00000476843		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000456435		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000318967		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000435409		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000512605		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395741	ENST00000476843		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000456435		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000318967		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000435409		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000512605		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395744	ENST00000476843		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000456435		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000318967		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000435409		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000512605		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000216061	ENST00000476843		ChiTaRS3.1			BE719316	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000378300	ENST00000378300		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378300	ENST00000378292		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378300	ENST00000329305		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378300	ENST00000360958		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378292	ENST00000378300		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378292	ENST00000378292		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378292	ENST00000329305		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000378292	ENST00000360958		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000329305	ENST00000378300		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000329305	ENST00000378292		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000329305	ENST00000329305		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000329305	ENST00000360958		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000360958	ENST00000378300		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000360958	ENST00000378292		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000360958	ENST00000329305		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
intron-3CDS	ENST00000360958	ENST00000360958		ChiTaRS3.1			BP232903	TPM2	chr9	35685321	-	TPM2	chr9	35685725	-
5CDS-intron	ENST00000448521	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000448521	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000448521	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000448521	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000448521	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000448521	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000456905	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000456905	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000456905	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000456905	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000456905	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000456905	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-intron	ENST00000440166	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-intron	ENST00000440166	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-intron	ENST00000440166	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-5UTR	ENST00000440166	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-5UTR	ENST00000440166	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-5UTR	ENST00000440166	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000452943	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000452943	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000452943	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000452943	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000452943	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000452943	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000468694	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000468694	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000468694	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000468694	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000468694	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000468694	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000494774	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000494774	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-intron	ENST00000494774	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000494774	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000494774	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5CDS-5UTR	ENST00000494774	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-intron	ENST00000490734	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-intron	ENST00000490734	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-intron	ENST00000490734	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-5UTR	ENST00000490734	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-5UTR	ENST00000490734	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
5UTR-5UTR	ENST00000490734	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-intron	ENST00000497184	ENST00000521264		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-intron	ENST00000497184	ENST00000522314		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-intron	ENST00000497184	ENST00000520382		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-5UTR	ENST00000497184	ENST00000524142		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-5UTR	ENST00000497184	ENST00000313115		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-5UTR	ENST00000497184	ENST00000522710		ChiTaRS3.1			AI079775	DBNL	chr7	44084360	-	ATOX1	chr5	151138185	-
intron-3CDS	ENST00000392562	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392562	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392562	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392562	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392562	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392562	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000392562	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316804	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316804	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316804	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316804	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316804	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316804	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000316804	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316615	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316615	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316615	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316615	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316615	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000316615	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000316615	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392563	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392563	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392563	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392563	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392563	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392563	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000392563	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392564	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392564	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392564	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392564	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392564	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000392564	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000392564	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000578961	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000578961	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000578961	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000578961	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000578961	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000578961	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000578961	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000462266	ENST00000392562		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000462266	ENST00000316804		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000462266	ENST00000316615		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000462266	ENST00000392563		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000462266	ENST00000392564		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-3CDS	ENST00000462266	ENST00000578961		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-5UTR	ENST00000462266	ENST00000462266		ChiTaRS3.1			AI940563	GRB2	chr17	73316469	+	GRB2	chr17	73316508	-
intron-intron	ENST00000337221	ENST00000343023		ChiTaRS3.1			BI036859	SCARA3	chr8	27530024	-	MCM7	chr7	99691880	-
intron-intron	ENST00000337221	ENST00000354230		ChiTaRS3.1			BI036859	SCARA3	chr8	27530024	-	MCM7	chr7	99691880	-
intron-intron	ENST00000337221	ENST00000303887		ChiTaRS3.1			BI036859	SCARA3	chr8	27530024	-	MCM7	chr7	99691880	-
3UTR-intron	ENST00000301904	ENST00000343023		ChiTaRS3.1			BI036859	SCARA3	chr8	27530024	-	MCM7	chr7	99691880	-
3UTR-intron	ENST00000301904	ENST00000354230		ChiTaRS3.1			BI036859	SCARA3	chr8	27530024	-	MCM7	chr7	99691880	-
3UTR-intron	ENST00000301904	ENST00000303887		ChiTaRS3.1			BI036859	SCARA3	chr8	27530024	-	MCM7	chr7	99691880	-
intron-3UTR	ENST00000273130	ENST00000273130		ChiTaRS3.1			AA483540	DYNC1LI1	chr3	32568317	-	DYNC1LI1	chr3	32568247	+
intron-3UTR	ENST00000273130	ENST00000432458		ChiTaRS3.1			AA483540	DYNC1LI1	chr3	32568317	-	DYNC1LI1	chr3	32568247	+
intron-3UTR	ENST00000432458	ENST00000273130		ChiTaRS3.1			AA483540	DYNC1LI1	chr3	32568317	-	DYNC1LI1	chr3	32568247	+
intron-3UTR	ENST00000432458	ENST00000432458		ChiTaRS3.1			AA483540	DYNC1LI1	chr3	32568317	-	DYNC1LI1	chr3	32568247	+
intron-3CDS	ENST00000295321	ENST00000295321		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-3CDS	ENST00000295321	ENST00000455721		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-intron	ENST00000295321	ENST00000486662		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-3CDS	ENST00000455721	ENST00000295321		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-3CDS	ENST00000455721	ENST00000455721		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-intron	ENST00000455721	ENST00000486662		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-3CDS	ENST00000486662	ENST00000295321		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-3CDS	ENST00000486662	ENST00000455721		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-intron	ENST00000486662	ENST00000486662		ChiTaRS3.1			BF746935	IWS1	chr2	128261118	-	IWS1	chr2	128261057	+
intron-3CDS	ENST00000329734	ENST00000216181		ChiTaRS3.1			BE762631	IRX3	chr16	54318947	+	MYH9	chr22	36684328	+
intron-intron	ENST00000329734	ENST00000475726		ChiTaRS3.1			BE762631	IRX3	chr16	54318947	+	MYH9	chr22	36684328	+
intron-intron	ENST00000329734	ENST00000401701		ChiTaRS3.1			BE762631	IRX3	chr16	54318947	+	MYH9	chr22	36684328	+
intron-intron	ENST00000262367	ENST00000330387		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000262367	ENST00000456390		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000262367	ENST00000452463		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000262367	ENST00000458726		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000262367	ENST00000468127		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000382070	ENST00000330387		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000382070	ENST00000456390		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000382070	ENST00000452463		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000382070	ENST00000458726		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-intron	ENST00000382070	ENST00000468127		ChiTaRS3.1			BI000845	CREBBP	chr16	3781792	-	CREB3L2	chr7	137584036	+
intron-5UTR	ENST00000244661	ENST00000290200		ChiTaRS3.1			DB110714	HIST1H3B	chr6	26031928	-	IL10RB	chr21	34638672	+
intron-3CDS	ENST00000464611	ENST00000418265		ChiTaRS3.1			BG874502	ACTB	chr7	5567659	-	ISY1-RAB43	chr3	128849443	-
intron-3CDS	ENST00000331789	ENST00000418265		ChiTaRS3.1			BG874502	ACTB	chr7	5567659	-	ISY1-RAB43	chr3	128849443	-
intron-3UTR	ENST00000262940	ENST00000431992		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000373422		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000257118		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000419414		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000262940	ENST00000373416		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000262940	ENST00000485928		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000373418		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000431992		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000373422		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000257118		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000419414		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000461209	ENST00000373416		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000461209	ENST00000485928		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000373418		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000431992		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000373422		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000257118		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000419414		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000449970	ENST00000373416		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000449970	ENST00000485928		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000373418		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000431992		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000373422		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000257118		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000419414		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000462172	ENST00000373416		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000462172	ENST00000485928		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000373418		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000431992		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000373422		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000257118		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000419414		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000521822	ENST00000373416		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000521822	ENST00000485928		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000373418		ChiTaRS3.1			BF856542	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3CDS	ENST00000298310	ENST00000298310		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000298310	ENST00000382135		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000298310	ENST00000545773		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000298310	ENST00000556925		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000298310	ENST00000546046		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000298310	ENST00000556672		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000382135	ENST00000298310		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000382135	ENST00000382135		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000382135	ENST00000545773		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000382135	ENST00000556925		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000382135	ENST00000546046		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000382135	ENST00000556672		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000545773	ENST00000298310		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000545773	ENST00000382135		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000545773	ENST00000545773		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000545773	ENST00000556925		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000545773	ENST00000546046		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000545773	ENST00000556672		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000556925	ENST00000298310		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556925	ENST00000382135		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556925	ENST00000545773		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556925	ENST00000556925		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556925	ENST00000546046		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556925	ENST00000556672		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000546046	ENST00000298310		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000546046	ENST00000382135		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000546046	ENST00000545773		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000546046	ENST00000556925		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000546046	ENST00000546046		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000546046	ENST00000556672		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000556672	ENST00000298310		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556672	ENST00000382135		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556672	ENST00000545773		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556672	ENST00000556925		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556672	ENST00000546046		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556672	ENST00000556672		ChiTaRS3.1			BG878308	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
5CDS-intron	ENST00000395808	ENST00000395808		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000395808	ENST00000589119		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000395808	ENST00000312090		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000395808	ENST00000269814		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000395808	ENST00000325464		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000395808	ENST00000606828		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000589119	ENST00000395808		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000589119	ENST00000589119		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000589119	ENST00000312090		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000589119	ENST00000269814		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000589119	ENST00000325464		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000589119	ENST00000606828		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000312090	ENST00000395808		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000312090	ENST00000589119		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000312090	ENST00000312090		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000312090	ENST00000269814		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000312090	ENST00000325464		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000312090	ENST00000606828		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000269814	ENST00000395808		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000269814	ENST00000589119		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000269814	ENST00000312090		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000269814	ENST00000269814		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000269814	ENST00000325464		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000269814	ENST00000606828		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000325464	ENST00000395808		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000325464	ENST00000589119		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000325464	ENST00000312090		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000325464	ENST00000269814		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000325464	ENST00000325464		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-intron	ENST00000325464	ENST00000606828		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
intron-intron	ENST00000606828	ENST00000395808		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
intron-intron	ENST00000606828	ENST00000589119		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
intron-intron	ENST00000606828	ENST00000312090		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
intron-intron	ENST00000606828	ENST00000269814		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
intron-intron	ENST00000606828	ENST00000325464		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
intron-intron	ENST00000606828	ENST00000606828		ChiTaRS3.1			BM919198	MED16	chr19	879940	-	MED16	chr19	884903	+
5CDS-3UTR	ENST00000372435	ENST00000539627		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000604123		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000413014		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000392002		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000436170		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000447302		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000544232		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000542945		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372435	ENST00000356385		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000539627		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000604123		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000413014		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000392002		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000436170		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000447302		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000544232		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000542945		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5UTR-3UTR	ENST00000372428	ENST00000356385		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000539627		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000604123		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000413014		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000392002		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000436170		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000447302		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000544232		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000542945		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000372419	ENST00000356385		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000539627		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000604123		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000413014		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000392002		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000436170		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000447302		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000544232		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000542945		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
5CDS-3UTR	ENST00000543248	ENST00000356385		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000539627		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000604123		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000413014		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000392002		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000436170		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000447302		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000544232		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000542945		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-3UTR	ENST00000372418	ENST00000356385		ChiTaRS3.1			BM553232	PRPS1	chrX	106871888	+	TMEM91	chr19	41889937	+
intron-5UTR	ENST00000323064	ENST00000545834		ChiTaRS3.1			BF985017	AGBL5	chr2	27293467	+	PFAS	chr17	8157319	+
intron-5UTR	ENST00000323064	ENST00000314666		ChiTaRS3.1			BF985017	AGBL5	chr2	27293467	+	PFAS	chr17	8157319	+
intron-intron	ENST00000323064	ENST00000585319		ChiTaRS3.1			BF985017	AGBL5	chr2	27293467	+	PFAS	chr17	8157319	+
3UTR-5UTR	ENST00000360131	ENST00000545834		ChiTaRS3.1			BF985017	AGBL5	chr2	27293467	+	PFAS	chr17	8157319	+
3UTR-5UTR	ENST00000360131	ENST00000314666		ChiTaRS3.1			BF985017	AGBL5	chr2	27293467	+	PFAS	chr17	8157319	+
3UTR-intron	ENST00000360131	ENST00000585319		ChiTaRS3.1			BF985017	AGBL5	chr2	27293467	+	PFAS	chr17	8157319	+
5UTR-3CDS	ENST00000400259	ENST00000325722		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000400259	ENST00000373266		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000400259	ENST00000485551		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-3CDS	ENST00000344548	ENST00000325722		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000344548	ENST00000373266		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000344548	ENST00000485551		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-3CDS	ENST00000315554	ENST00000325722		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000315554	ENST00000373266		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000315554	ENST00000485551		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
3UTR-3CDS	ENST00000498236	ENST00000325722		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
3UTR-intron	ENST00000498236	ENST00000373266		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
3UTR-intron	ENST00000498236	ENST00000485551		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-3CDS	ENST00000421089	ENST00000325722		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000421089	ENST00000373266		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
5UTR-intron	ENST00000421089	ENST00000485551		ChiTaRS3.1			DA531347	CDC42	chr1	22379237	+	KIAA0319L	chr1	35944815	-
intron-3CDS	ENST00000379441	ENST00000379441		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000379441	ENST00000179765		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000379441	ENST00000551812		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000379441	ENST00000549884		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-intron	ENST00000379441	ENST00000553222		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000179765	ENST00000379441		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000179765	ENST00000179765		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000179765	ENST00000551812		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000179765	ENST00000549884		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-intron	ENST00000179765	ENST00000553222		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000551812	ENST00000379441		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000551812	ENST00000179765		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000551812	ENST00000551812		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000551812	ENST00000549884		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-intron	ENST00000551812	ENST00000553222		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000549884	ENST00000379441		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000549884	ENST00000179765		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000549884	ENST00000551812		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000549884	ENST00000549884		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-intron	ENST00000549884	ENST00000553222		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000553222	ENST00000379441		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000553222	ENST00000179765		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000553222	ENST00000551812		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-3CDS	ENST00000553222	ENST00000549884		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
intron-intron	ENST00000553222	ENST00000553222		ChiTaRS3.1			BQ352905	BAZ2A	chr12	57003658	+	BAZ2A	chr12	57003602	-
5CDS-intron	ENST00000584667	ENST00000584667		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000355423		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000579864		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000584667		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000355423		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000579864		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000584667		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000355423		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000579864		ChiTaRS3.1			BE175395	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
In-frame	ENST00000318074	ENST00000318074		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
In-frame	ENST00000318074	ENST00000543823		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
5CDS-3UTR	ENST00000318074	ENST00000490170		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
In-frame	ENST00000543823	ENST00000318074		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
In-frame	ENST00000543823	ENST00000543823		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
5CDS-3UTR	ENST00000543823	ENST00000490170		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
3UTR-3CDS	ENST00000490170	ENST00000318074		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
3UTR-3CDS	ENST00000490170	ENST00000543823		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
3UTR-3UTR	ENST00000490170	ENST00000490170		ChiTaRS3.1			BF871597	SYTL1	chr1	27674481	-	SYTL1	chr1	27680254	-
3UTR-3UTR	ENST00000534336	ENST00000275364		ChiTaRS3.1			AW820236	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000544127		ChiTaRS3.1			AW820236	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-5UTR	ENST00000534336	ENST00000491117		ChiTaRS3.1			AW820236	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000407904		ChiTaRS3.1			AW820236	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000407653		ChiTaRS3.1			AW820236	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000396960		ChiTaRS3.1			AW820236	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
intron-intron	ENST00000414786	ENST00000272203		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000414786	ENST00000414478		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000414786	ENST00000485632		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000445220	ENST00000272203		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000445220	ENST00000414478		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000445220	ENST00000485632		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000262795	ENST00000272203		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000262795	ENST00000414478		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-intron	ENST00000262795	ENST00000485632		ChiTaRS3.1			BF947670	SHANK3	chr22	51144704	+	PLEKHA6	chr1	204255253	-
intron-3CDS	ENST00000567020	ENST00000544484		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000567020	ENST00000357008		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000567020	ENST00000309577		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000567020	ENST00000544040		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-intron	ENST00000567020	ENST00000540960		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000293970	ENST00000544484		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000293970	ENST00000357008		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000293970	ENST00000309577		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000293970	ENST00000544040		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-intron	ENST00000293970	ENST00000540960		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000434757	ENST00000544484		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000434757	ENST00000357008		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000434757	ENST00000309577		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-3CDS	ENST00000434757	ENST00000544040		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-intron	ENST00000434757	ENST00000540960		ChiTaRS3.1			CN277824	TBC1D24	chr16	2569311	+	CHD4	chr12	6709481	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			DQ856481	IGHG1	chr14	106058009	-	IGHG1	chr14	106322325	-
5UTR-3CDS	ENST00000261749	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-5UTR	ENST00000261749	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-3CDS	ENST00000561060	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-5UTR	ENST00000561060	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-3CDS	ENST00000559157	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-5UTR	ENST00000559157	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-3CDS	ENST00000558494	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
5UTR-5UTR	ENST00000558494	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000559835	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000559835	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000559775	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000559775	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000558688	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000558688	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000558087	ENST00000262193		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000558087	ENST00000462957		ChiTaRS3.1			CB122525	ZFAND6	chr15	80352151	+	PSMB1	chr6	170858204	-
intron-3UTR	ENST00000255194	ENST00000255194		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-3UTR	ENST00000255194	ENST00000519295		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-intron	ENST00000255194	ENST00000523204		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-3UTR	ENST00000519295	ENST00000255194		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-3UTR	ENST00000519295	ENST00000519295		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-intron	ENST00000519295	ENST00000523204		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-3UTR	ENST00000523204	ENST00000255194		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-3UTR	ENST00000523204	ENST00000519295		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
intron-intron	ENST00000523204	ENST00000523204		ChiTaRS3.1			CB242562	AP3B1	chr5	77298349	+	AP3B1	chr5	77298535	-
5CDS-intron	ENST00000395211	ENST00000291572		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000398061		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000327505		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000398063		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000398058		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000546158		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000479117		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000291572		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000398061		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000327505		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000398063		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000398058		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000546158		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000479117		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000291572		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000398061		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000327505		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000398063		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000398058		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000546158		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000479117		ChiTaRS3.1			BF955600	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			DA865025	MEG3	chr14	101302360	+	MEG3	chr14	101295389	+
intron-3CDS	ENST00000404233	ENST00000404233		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000404233	ENST00000529972		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000404233	ENST00000525859		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000404233	ENST00000543287		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000529972	ENST00000404233		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000529972	ENST00000529972		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000529972	ENST00000525859		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000529972	ENST00000543287		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000525859	ENST00000404233		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000525859	ENST00000529972		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000525859	ENST00000525859		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000525859	ENST00000543287		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000543287	ENST00000404233		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000543287	ENST00000529972		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000543287	ENST00000525859		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-3CDS	ENST00000543287	ENST00000543287		ChiTaRS3.1			BF326355	HYOU1	chr11	118923063	+	HYOU1	chr11	118923391	-
intron-intron	ENST00000444376	ENST00000261406		ChiTaRS3.1			AA367420	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000444376	ENST00000546220		ChiTaRS3.1			AA367420	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000283179	ENST00000261406		ChiTaRS3.1			AA367420	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000283179	ENST00000546220		ChiTaRS3.1			AA367420	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000322147	ENST00000540393		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000322147	ENST00000254695		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000322147	ENST00000366401		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000322147	ENST00000542807		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000322147	ENST00000574709		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000301873	ENST00000540393		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000301873	ENST00000254695		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000301873	ENST00000366401		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000301873	ENST00000542807		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000301873	ENST00000574709		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000530785	ENST00000540393		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000530785	ENST00000254695		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000530785	ENST00000366401		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000530785	ENST00000542807		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000530785	ENST00000574709		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000529189	ENST00000540393		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000529189	ENST00000254695		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000529189	ENST00000366401		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000529189	ENST00000542807		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000529189	ENST00000574709		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000532932	ENST00000540393		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000532932	ENST00000254695		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000532932	ENST00000366401		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000532932	ENST00000542807		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000532932	ENST00000574709		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000536982	ENST00000540393		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000536982	ENST00000254695		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-3UTR	ENST00000536982	ENST00000366401		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000536982	ENST00000542807		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000536982	ENST00000574709		ChiTaRS3.1			AI031629	LTBP3	chr11	65306477	+	RAP1GAP2	chr17	2940430	-
intron-intron	ENST00000252242	ENST00000252998		ChiTaRS3.1			CV322002	KRT5	chr12	52912779	+	RBBP8NL	chr20	61001304	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			AW901635	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000296444	ENST00000204726		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000296444	ENST00000450791		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000296444	ENST00000456883		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000296444	ENST00000537452		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000296444	ENST00000545875		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000296444	ENST00000534967		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000444115	ENST00000204726		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000444115	ENST00000450791		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000444115	ENST00000456883		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000444115	ENST00000537452		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000444115	ENST00000545875		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000444115	ENST00000534967		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000426002	ENST00000204726		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000426002	ENST00000450791		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000426002	ENST00000456883		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000426002	ENST00000537452		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000426002	ENST00000545875		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000426002	ENST00000534967		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000465449	ENST00000204726		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000465449	ENST00000450791		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000465449	ENST00000456883		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000465449	ENST00000537452		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000465449	ENST00000545875		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000465449	ENST00000534967		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000442747	ENST00000204726		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000442747	ENST00000450791		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000442747	ENST00000456883		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000442747	ENST00000537452		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000442747	ENST00000545875		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000442747	ENST00000534967		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000443308	ENST00000204726		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000443308	ENST00000450791		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000443308	ENST00000456883		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000443308	ENST00000537452		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000443308	ENST00000545875		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-intron	ENST00000443308	ENST00000534967		ChiTaRS3.1			BE535541	SHISA5	chr3	48510821	-	GOLGA3	chr12	133402281	+
intron-3UTR	ENST00000317508	ENST00000476873		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000317508	ENST00000368701		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000317508	ENST00000368702		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000317508	ENST00000344616		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-intron	ENST00000317508	ENST00000368700		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000568261	ENST00000476873		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000568261	ENST00000368701		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000568261	ENST00000368702		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-3UTR	ENST00000568261	ENST00000344616		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
intron-intron	ENST00000568261	ENST00000368700		ChiTaRS3.1			AI637635	PRSS8	chr16	31142850	+	S100A14	chr1	153587202	+
In-frame	ENST00000219473	ENST00000308159		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
In-frame	ENST00000219473	ENST00000569842		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5CDS-5UTR	ENST00000219473	ENST00000564887		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5CDS-3UTR	ENST00000219473	ENST00000569595		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5CDS-5UTR	ENST00000219473	ENST00000542526		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5UTR-3CDS	ENST00000570191	ENST00000308159		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5UTR-3CDS	ENST00000570191	ENST00000569842		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5UTR-5UTR	ENST00000570191	ENST00000564887		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5UTR-3UTR	ENST00000570191	ENST00000569595		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
5UTR-5UTR	ENST00000570191	ENST00000542526		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
3UTR-3CDS	ENST00000562743	ENST00000308159		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
3UTR-3CDS	ENST00000562743	ENST00000569842		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
3UTR-5UTR	ENST00000562743	ENST00000564887		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
3UTR-3UTR	ENST00000562743	ENST00000569595		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
3UTR-5UTR	ENST00000562743	ENST00000542526		ChiTaRS3.1			CN307206	USP10	chr16	84733718	+	NUP93	chr16	56832386	+
Frame-shit	ENST00000425759	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000425759	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000425759	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000425759	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000425759	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000425759	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000425759	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-intron	ENST00000425759	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000292733	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000292733	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000292733	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000292733	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000292733	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000292733	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000292733	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-intron	ENST00000292733	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3CDS	ENST00000542773	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3CDS	ENST00000542773	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3UTR	ENST00000542773	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3UTR	ENST00000542773	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3UTR	ENST00000542773	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3UTR	ENST00000542773	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-3UTR	ENST00000542773	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
3UTR-intron	ENST00000542773	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000263205	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000263205	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000263205	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000263205	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000263205	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000263205	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000263205	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-intron	ENST00000263205	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000406969	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000406969	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000406969	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000406969	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000406969	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000406969	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000406969	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-intron	ENST00000406969	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000382974	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000382974	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000382974	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000382974	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000382974	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000382974	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000382974	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-intron	ENST00000382974	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000541476	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
Frame-shit	ENST00000541476	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000541476	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000541476	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000541476	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000541476	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-3UTR	ENST00000541476	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
5CDS-intron	ENST00000541476	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3CDS	ENST00000478831	ENST00000425759		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3CDS	ENST00000478831	ENST00000292733		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3UTR	ENST00000478831	ENST00000542773		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3UTR	ENST00000478831	ENST00000263205		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3UTR	ENST00000478831	ENST00000406969		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3UTR	ENST00000478831	ENST00000382974		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3UTR	ENST00000478831	ENST00000541476		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-intron	ENST00000478831	ENST00000478831		ChiTaRS3.1			BI051034	MED15	chr22	20939460	-	MED15	chr22	20939403	+
intron-3CDS	ENST00000311330	ENST00000402734		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3CDS	ENST00000311330	ENST00000407025		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3CDS	ENST00000311330	ENST00000272983		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3CDS	ENST00000311330	ENST00000234038		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3CDS	ENST00000311330	ENST00000404405		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3CDS	ENST00000311330	ENST00000406106		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3CDS	ENST00000311330	ENST00000401987		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
intron-3UTR	ENST00000311330	ENST00000485630		ChiTaRS3.1			BI046018	CD248	chr11	66083281	-	PPP1R7	chr2	242097251	-
3UTR-3CDS	ENST00000462876	ENST00000350210		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
3UTR-3CDS	ENST00000462876	ENST00000368368		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
3UTR-3CDS	ENST00000462876	ENST00000361361		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
3UTR-5UTR	ENST00000462876	ENST00000472550		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000222693	ENST00000350210		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000222693	ENST00000368368		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000222693	ENST00000361361		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
5CDS-5UTR	ENST00000222693	ENST00000472550		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000343213	ENST00000350210		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000343213	ENST00000368368		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000343213	ENST00000361361		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
5CDS-5UTR	ENST00000343213	ENST00000472550		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000393480	ENST00000350210		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000393480	ENST00000368368		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
In-frame	ENST00000393480	ENST00000361361		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
5CDS-5UTR	ENST00000393480	ENST00000472550		ChiTaRS3.1			AI091384	CAV2	chr7	116139901	+	FAM189B	chr1	155221669	-
intron-3CDS	ENST00000264433	ENST00000331782		ChiTaRS3.1			AW368093	FNIP2	chr4	159750868	+	JAG2	chr14	105612312	-
intron-3CDS	ENST00000264433	ENST00000347004		ChiTaRS3.1			AW368093	FNIP2	chr4	159750868	+	JAG2	chr14	105612312	-
intron-3CDS	ENST00000379346	ENST00000331782		ChiTaRS3.1			AW368093	FNIP2	chr4	159750868	+	JAG2	chr14	105612312	-
intron-3CDS	ENST00000379346	ENST00000347004		ChiTaRS3.1			AW368093	FNIP2	chr4	159750868	+	JAG2	chr14	105612312	-
intron-3CDS	ENST00000505445	ENST00000331782		ChiTaRS3.1			AW368093	FNIP2	chr4	159750868	+	JAG2	chr14	105612312	-
intron-3CDS	ENST00000505445	ENST00000347004		ChiTaRS3.1			AW368093	FNIP2	chr4	159750868	+	JAG2	chr14	105612312	-
intron-intron	ENST00000415807	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000415807		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000336824		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000416957		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000392699		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000421757		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000423424		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000476794		ChiTaRS3.1			BE082950	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-3CDS	ENST00000539437	ENST00000539437		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000539437	ENST00000268151		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000539437	ENST00000268150		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000539437	ENST00000566497		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000539437	ENST00000542878		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-intron	ENST00000539437	ENST00000559997		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268151	ENST00000539437		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268151	ENST00000268151		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268151	ENST00000268150		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268151	ENST00000566497		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268151	ENST00000542878		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-intron	ENST00000268151	ENST00000559997		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268150	ENST00000539437		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268150	ENST00000268151		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268150	ENST00000268150		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268150	ENST00000566497		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000268150	ENST00000542878		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-intron	ENST00000268150	ENST00000559997		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000566497	ENST00000539437		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000566497	ENST00000268151		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000566497	ENST00000268150		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000566497	ENST00000566497		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000566497	ENST00000542878		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-intron	ENST00000566497	ENST00000559997		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000542878	ENST00000539437		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000542878	ENST00000268151		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000542878	ENST00000268150		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000542878	ENST00000566497		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000542878	ENST00000542878		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-intron	ENST00000542878	ENST00000559997		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000559997	ENST00000539437		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000559997	ENST00000268151		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000559997	ENST00000268150		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000559997	ENST00000566497		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-3CDS	ENST00000559997	ENST00000542878		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-intron	ENST00000559997	ENST00000559997		ChiTaRS3.1			AI086567	MFGE8	chr15	89442704	+	MFGE8	chr15	89444819	-
intron-5UTR	ENST00000369252	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-5UTR	ENST00000533213	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-5UTR	ENST00000277895	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-5UTR	ENST00000369266	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-5UTR	ENST00000392952	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-5UTR	ENST00000369253	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-5UTR	ENST00000477638	ENST00000375571		ChiTaRS3.1			DA271767	ABLIM1	chr10	116527820	-	MAPRE1	chr20	31413729	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835146	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000357429	ENST00000346329		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000357429	ENST00000301843		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000357429	ENST00000527622		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000357429	ENST00000376561		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000357429	ENST00000538675		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397100	ENST00000346329		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397100	ENST00000301843		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397100	ENST00000527622		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397100	ENST00000376561		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397100	ENST00000538675		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397098	ENST00000346329		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397098	ENST00000301843		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397098	ENST00000527622		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397098	ENST00000376561		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397098	ENST00000538675		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000488073	ENST00000346329		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000488073	ENST00000301843		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000488073	ENST00000527622		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000488073	ENST00000376561		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000488073	ENST00000538675		ChiTaRS3.1			BE933929	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
3UTR-3CDS	ENST00000175756	ENST00000336023		ChiTaRS3.1			BE143246	PTPN18	chr2	131132563	+	TUBA1B	chr12	49521792	-
intron-3CDS	ENST00000347849	ENST00000336023		ChiTaRS3.1			BE143246	PTPN18	chr2	131132563	+	TUBA1B	chr12	49521792	-
intron-3CDS	ENST00000420717	ENST00000336023		ChiTaRS3.1			BE143246	PTPN18	chr2	131132563	+	TUBA1B	chr12	49521792	-
Frame-shit	ENST00000418930	ENST00000356842		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000418930	ENST00000359629		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000418930	ENST00000538214		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000418930	ENST00000537768		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000418930	ENST00000335712		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
5CDS-5UTR	ENST00000418930	ENST00000477659		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
5CDS-5UTR	ENST00000418930	ENST00000358510		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000256117	ENST00000356842		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000256117	ENST00000359629		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000256117	ENST00000538214		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000256117	ENST00000537768		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000256117	ENST00000335712		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
5CDS-5UTR	ENST00000256117	ENST00000477659		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
5CDS-5UTR	ENST00000256117	ENST00000358510		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000416274	ENST00000356842		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000416274	ENST00000359629		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000416274	ENST00000538214		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000416274	ENST00000537768		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
Frame-shit	ENST00000416274	ENST00000335712		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
5CDS-5UTR	ENST00000416274	ENST00000477659		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
5CDS-5UTR	ENST00000416274	ENST00000358510		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-3CDS	ENST00000519128	ENST00000356842		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-3CDS	ENST00000519128	ENST00000359629		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-3CDS	ENST00000519128	ENST00000538214		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-3CDS	ENST00000519128	ENST00000537768		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-3CDS	ENST00000519128	ENST00000335712		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-5UTR	ENST00000519128	ENST00000477659		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
3UTR-5UTR	ENST00000519128	ENST00000358510		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000517476	ENST00000356842		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000517476	ENST00000359629		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000517476	ENST00000538214		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000517476	ENST00000537768		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000517476	ENST00000335712		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-5UTR	ENST00000517476	ENST00000477659		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-5UTR	ENST00000517476	ENST00000358510		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000521429	ENST00000356842		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000521429	ENST00000359629		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000521429	ENST00000538214		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000521429	ENST00000537768		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000521429	ENST00000335712		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-5UTR	ENST00000521429	ENST00000477659		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-5UTR	ENST00000521429	ENST00000358510		ChiTaRS3.1			BE676586	E2F5	chr8	86089891	+	BCL11A	chr2	60689560	-
intron-3CDS	ENST00000403829	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000403829	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000403829	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000403829	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000403829	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298687	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298687	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298687	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298687	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298687	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000350792	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000350792	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000350792	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000350792	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000350792	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397858	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397858	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397858	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397858	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397858	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554104	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554104	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554104	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554104	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554104	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000555158	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000555158	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000555158	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000555158	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000555158	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000553503	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000553503	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000553503	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000553503	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000553503	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397853	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397853	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397853	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397853	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397853	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000360463	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000360463	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000360463	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000360463	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000360463	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000556147	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000556147	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000556147	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000556147	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000556147	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397856	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397856	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397856	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397856	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397856	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397855	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397855	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397855	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397855	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397855	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554143	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554143	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554143	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554143	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554143	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397851	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397851	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397851	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397851	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397851	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397847	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397847	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397847	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397847	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397847	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298684	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298684	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298684	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298684	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000298684	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397844	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397844	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397844	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397844	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000397844	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554277	ENST00000439590		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554277	ENST00000311111		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554277	ENST00000584577		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554277	ENST00000534490		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
intron-3CDS	ENST00000554277	ENST00000533498		ChiTaRS3.1			CK004088	NDRG2	chr14	21486161	-	RPL38	chr17	72200288	+
Frame-shit	ENST00000446906	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000446906	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000446906	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000446906	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000446906	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
5CDS-intron	ENST00000446906	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377072	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377072	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377072	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377072	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377072	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
5CDS-intron	ENST00000377072	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000307729	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000307729	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000307729	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000307729	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000307729	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
5CDS-intron	ENST00000307729	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377059	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377059	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377059	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377059	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377059	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
5CDS-intron	ENST00000377059	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
3UTR-3CDS	ENST00000495130	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
3UTR-3CDS	ENST00000495130	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
3UTR-3CDS	ENST00000495130	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
3UTR-3CDS	ENST00000495130	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
3UTR-3CDS	ENST00000495130	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
3UTR-intron	ENST00000495130	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377100	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377100	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377100	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377100	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377100	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
5CDS-intron	ENST00000377100	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377091	ENST00000532317		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377091	ENST00000526033		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
In-frame	ENST00000377091	ENST00000393346		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377091	ENST00000528398		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
Frame-shit	ENST00000377091	ENST00000356360		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
5CDS-intron	ENST00000377091	ENST00000528411		ChiTaRS3.1			AF060928	MLLT10	chr10	21823733	+	PICALM	chr11	85670105	-
intron-intron	ENST00000426559	ENST00000373381		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000426559	ENST00000373380		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000426559	ENST00000373377		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000426559	ENST00000373388		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000426559	ENST00000489419		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000426559	ENST00000338325		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000455785	ENST00000373381		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000455785	ENST00000373380		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000455785	ENST00000373377		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000455785	ENST00000373388		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000455785	ENST00000489419		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000455785	ENST00000338325		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000399728	ENST00000373381		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000399728	ENST00000373380		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000399728	ENST00000373377		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000399728	ENST00000373388		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000399728	ENST00000489419		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000399728	ENST00000338325		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000465604	ENST00000373381		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000465604	ENST00000373380		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000465604	ENST00000373377		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000465604	ENST00000373388		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000465604	ENST00000489419		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000465604	ENST00000338325		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000357865	ENST00000373381		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000357865	ENST00000373380		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000357865	ENST00000373377		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000357865	ENST00000373388		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000357865	ENST00000489419		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000357865	ENST00000338325		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000374291	ENST00000373381		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000374291	ENST00000373380		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000374291	ENST00000373377		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000374291	ENST00000373388		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000374291	ENST00000489419		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
intron-intron	ENST00000374291	ENST00000338325		ChiTaRS3.1			M85468	STMN1	chr1	26227548	-	CSMD2	chr1	34376250	-
In-frame	ENST00000462484	ENST00000462484		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000462484	ENST00000334856		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000462484	ENST00000460843		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
5CDS-3UTR	ENST00000462484	ENST00000371394		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000334856	ENST00000462484		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000334856	ENST00000334856		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000334856	ENST00000460843		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
5CDS-3UTR	ENST00000334856	ENST00000371394		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000460843	ENST00000462484		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000460843	ENST00000334856		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000460843	ENST00000460843		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
5CDS-3UTR	ENST00000460843	ENST00000371394		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
3UTR-3CDS	ENST00000371394	ENST00000462484		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
3UTR-3CDS	ENST00000371394	ENST00000334856		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
3UTR-3CDS	ENST00000371394	ENST00000460843		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
3UTR-3UTR	ENST00000371394	ENST00000371394		ChiTaRS3.1			BQ370417	EHMT1	chr9	140611429	+	EHMT1	chr9	140622837	-
In-frame	ENST00000304636	ENST00000304636		ChiTaRS3.1			CN367365	COL3A1	chr2	189870084	-	COL3A1	chr2	189870134	+
5CDS-intron	ENST00000304636	ENST00000317840		ChiTaRS3.1			CN367365	COL3A1	chr2	189870084	-	COL3A1	chr2	189870134	+
intron-3CDS	ENST00000317840	ENST00000304636		ChiTaRS3.1			CN367365	COL3A1	chr2	189870084	-	COL3A1	chr2	189870134	+
intron-intron	ENST00000317840	ENST00000317840		ChiTaRS3.1			CN367365	COL3A1	chr2	189870084	-	COL3A1	chr2	189870134	+
intron-3UTR	ENST00000418109	ENST00000311481		ChiTaRS3.1			BE714888	LAMB2	chr3	49158775	-	RAB1B	chr11	66043970	-
intron-3UTR	ENST00000418109	ENST00000527397		ChiTaRS3.1			BE714888	LAMB2	chr3	49158775	-	RAB1B	chr11	66043970	-
intron-3UTR	ENST00000305544	ENST00000311481		ChiTaRS3.1			BE714888	LAMB2	chr3	49158775	-	RAB1B	chr11	66043970	-
intron-3UTR	ENST00000305544	ENST00000527397		ChiTaRS3.1			BE714888	LAMB2	chr3	49158775	-	RAB1B	chr11	66043970	-
intron-3UTR	ENST00000464891	ENST00000311481		ChiTaRS3.1			BE714888	LAMB2	chr3	49158775	-	RAB1B	chr11	66043970	-
intron-3UTR	ENST00000464891	ENST00000527397		ChiTaRS3.1			BE714888	LAMB2	chr3	49158775	-	RAB1B	chr11	66043970	-
intron-3CDS	ENST00000360319	ENST00000360319		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000360319	ENST00000422373		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000360319	ENST00000369850		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000360319	ENST00000369856		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000360319	ENST00000344736		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000360319	ENST00000498491		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000422373	ENST00000360319		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000422373	ENST00000422373		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000422373	ENST00000369850		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000422373	ENST00000369856		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000422373	ENST00000344736		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000422373	ENST00000498491		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000369850	ENST00000360319		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000369850	ENST00000422373		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000369850	ENST00000369850		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000369850	ENST00000369856		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000369850	ENST00000344736		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000369850	ENST00000498491		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000369856	ENST00000369856		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000369856	ENST00000344736		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000369856	ENST00000498491		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000344736	ENST00000360319		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000344736	ENST00000422373		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000344736	ENST00000369850		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000344736	ENST00000369856		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000344736	ENST00000344736		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000344736	ENST00000498491		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000498491	ENST00000369856		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-5UTR	ENST00000498491	ENST00000344736		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000498491	ENST00000498491		ChiTaRS3.1			BF925922	FLNA	chrX	153583406	+	FLNA	chrX	153585861	-
intron-intron	ENST00000476233	ENST00000377707		ChiTaRS3.1			BF914958	HNRNPA2B1	chr7	26232902	-	SHB	chr9	38049158	-
intron-intron	ENST00000476233	ENST00000377700		ChiTaRS3.1			BF914958	HNRNPA2B1	chr7	26232902	-	SHB	chr9	38049158	-
intron-intron	ENST00000354667	ENST00000377707		ChiTaRS3.1			BF914958	HNRNPA2B1	chr7	26232902	-	SHB	chr9	38049158	-
intron-intron	ENST00000354667	ENST00000377700		ChiTaRS3.1			BF914958	HNRNPA2B1	chr7	26232902	-	SHB	chr9	38049158	-
intron-intron	ENST00000356674	ENST00000377707		ChiTaRS3.1			BF914958	HNRNPA2B1	chr7	26232902	-	SHB	chr9	38049158	-
intron-intron	ENST00000356674	ENST00000377700		ChiTaRS3.1			BF914958	HNRNPA2B1	chr7	26232902	-	SHB	chr9	38049158	-
Frame-shit	ENST00000519973	ENST00000442101		ChiTaRS3.1			BF446092	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
5CDS-5UTR	ENST00000519973	ENST00000498824		ChiTaRS3.1			BF446092	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
5CDS-5UTR	ENST00000519973	ENST00000239882		ChiTaRS3.1			BF446092	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-3CDS	ENST00000517923	ENST00000442101		ChiTaRS3.1			BF446092	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-5UTR	ENST00000517923	ENST00000498824		ChiTaRS3.1			BF446092	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-5UTR	ENST00000517923	ENST00000239882		ChiTaRS3.1			BF446092	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-3UTR	ENST00000397063	ENST00000313899		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397063	ENST00000353341		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397063	ENST00000543098		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397063	ENST00000352301		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000397063	ENST00000508119		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000397063	ENST00000541060		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397062	ENST00000313899		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397062	ENST00000353341		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397062	ENST00000543098		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000397062	ENST00000352301		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000397062	ENST00000508119		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000397062	ENST00000541060		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000446151	ENST00000313899		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000446151	ENST00000353341		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000446151	ENST00000543098		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000446151	ENST00000352301		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000446151	ENST00000508119		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000446151	ENST00000541060		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000464747	ENST00000313899		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000464747	ENST00000353341		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000464747	ENST00000543098		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000464747	ENST00000352301		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000464747	ENST00000508119		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000464747	ENST00000541060		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000423513	ENST00000313899		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000423513	ENST00000353341		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000423513	ENST00000543098		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000423513	ENST00000352301		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000423513	ENST00000508119		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-intron	ENST00000423513	ENST00000541060		ChiTaRS3.1			BF096106	NFE2L2	chr2	178096309	-	HNRNPD	chr4	83275272	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835151	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
5CDS-intron	ENST00000377191	ENST00000419152		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000532400		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000532741		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000317198		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000526838		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000442189		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000528610		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000423316		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000395119		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000529272		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000531621		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000524624		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000377191	ENST00000531770		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000419152		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000532400		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000532741		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000317198		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000526838		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000442189		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000528610		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000423316		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000395119		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000529272		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000531621		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000524624		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000430571	ENST00000531770		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000419152		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000532400		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000532741		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000317198		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000526838		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000442189		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000528610		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000423316		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000395119		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000529272		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000531621		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000524624		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
5CDS-intron	ENST00000539513	ENST00000531770		ChiTaRS3.1			BG004570	XRN2	chr20	21312271	+	EEF1D	chr8	144674315	+
intron-3CDS	ENST00000481808	ENST00000239938		ChiTaRS3.1			AI681329	FBXL15	chr10	104182840	-	EGR1	chr5	137803056	+
3UTR-3CDS	ENST00000224862	ENST00000239938		ChiTaRS3.1			AI681329	FBXL15	chr10	104182840	-	EGR1	chr5	137803056	+
3UTR-3CDS	ENST00000369956	ENST00000239938		ChiTaRS3.1			AI681329	FBXL15	chr10	104182840	-	EGR1	chr5	137803056	+
intron-intron	ENST00000553277	ENST00000553277		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000243077		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000338962		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000554174		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000553446		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000553277		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000243077		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000338962		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000554174		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000553446		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000553277		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000243077		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000338962		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000554174		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000553446		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000553277		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000243077		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000338962		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000554174		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000553446		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000553277		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000243077		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000338962		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000554174		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000553446		ChiTaRS3.1			AW366981	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000300692	ENST00000475040		ChiTaRS3.1			BF873231	CD3D	chr11	118212373	-	MRPS5	chr2	95756671	+
intron-intron	ENST00000300692	ENST00000272418		ChiTaRS3.1			BF873231	CD3D	chr11	118212373	-	MRPS5	chr2	95756671	+
intron-intron	ENST00000529594	ENST00000475040		ChiTaRS3.1			BF873231	CD3D	chr11	118212373	-	MRPS5	chr2	95756671	+
intron-intron	ENST00000529594	ENST00000272418		ChiTaRS3.1			BF873231	CD3D	chr11	118212373	-	MRPS5	chr2	95756671	+
intron-intron	ENST00000392884	ENST00000475040		ChiTaRS3.1			BF873231	CD3D	chr11	118212373	-	MRPS5	chr2	95756671	+
intron-intron	ENST00000392884	ENST00000272418		ChiTaRS3.1			BF873231	CD3D	chr11	118212373	-	MRPS5	chr2	95756671	+
intron-3CDS	ENST00000376251	ENST00000376251		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000376251	ENST00000323022		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000376251	ENST00000376265		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-intron	ENST00000376251	ENST00000480889		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000323022	ENST00000376251		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000323022	ENST00000323022		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000323022	ENST00000376265		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-intron	ENST00000323022	ENST00000480889		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000376265	ENST00000376251		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000376265	ENST00000323022		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000376265	ENST00000376265		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-intron	ENST00000376265	ENST00000480889		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000480889	ENST00000376251		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000480889	ENST00000323022		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-3CDS	ENST00000480889	ENST00000376265		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-intron	ENST00000480889	ENST00000480889		ChiTaRS3.1			CK299179	CACNA1F	chrX	49061705	+	CACNA1F	chrX	49061775	-
intron-intron	ENST00000288235	ENST00000288235		ChiTaRS3.1			BE767923	MYO1E	chr15	59487716	-	MYO1E	chr15	59500877	+
intron-intron	ENST00000288235	ENST00000558814		ChiTaRS3.1			BE767923	MYO1E	chr15	59487716	-	MYO1E	chr15	59500877	+
intron-intron	ENST00000558814	ENST00000288235		ChiTaRS3.1			BE767923	MYO1E	chr15	59487716	-	MYO1E	chr15	59500877	+
intron-intron	ENST00000558814	ENST00000558814		ChiTaRS3.1			BE767923	MYO1E	chr15	59487716	-	MYO1E	chr15	59500877	+
intron-3CDS	ENST00000427836	ENST00000455537		ChiTaRS3.1			BQ340375	PLEKHM3	chr2	208725969	-	KIF5A	chr12	57957889	+
intron-intron	ENST00000427836	ENST00000286452		ChiTaRS3.1			BQ340375	PLEKHM3	chr2	208725969	-	KIF5A	chr12	57957889	+
intron-3CDS	ENST00000389247	ENST00000455537		ChiTaRS3.1			BQ340375	PLEKHM3	chr2	208725969	-	KIF5A	chr12	57957889	+
intron-intron	ENST00000389247	ENST00000286452		ChiTaRS3.1			BQ340375	PLEKHM3	chr2	208725969	-	KIF5A	chr12	57957889	+
intron-3CDS	ENST00000457206	ENST00000455537		ChiTaRS3.1			BQ340375	PLEKHM3	chr2	208725969	-	KIF5A	chr12	57957889	+
intron-intron	ENST00000457206	ENST00000286452		ChiTaRS3.1			BQ340375	PLEKHM3	chr2	208725969	-	KIF5A	chr12	57957889	+
intron-3CDS	ENST00000396392	ENST00000343150		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000396392	ENST00000340342		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3UTR	ENST00000396392	ENST00000495822		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-intron	ENST00000396392	ENST00000342020		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-3CDS	ENST00000396396	ENST00000343150		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-3CDS	ENST00000396396	ENST00000340342		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-3UTR	ENST00000396396	ENST00000495822		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
3UTR-intron	ENST00000396396	ENST00000342020		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000604870	ENST00000343150		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000604870	ENST00000340342		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3UTR	ENST00000604870	ENST00000495822		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-intron	ENST00000604870	ENST00000342020		ChiTaRS3.1			BE836763	PGM5	chr9	71145625	-	CTSL	chr9	90344595	-
intron-3CDS	ENST00000328879	ENST00000328879		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-3CDS	ENST00000328879	ENST00000440659		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-intron	ENST00000328879	ENST00000470335		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-3CDS	ENST00000440659	ENST00000328879		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-3CDS	ENST00000440659	ENST00000440659		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-intron	ENST00000440659	ENST00000470335		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-3CDS	ENST00000470335	ENST00000328879		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-3CDS	ENST00000470335	ENST00000440659		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-intron	ENST00000470335	ENST00000470335		ChiTaRS3.1			AI768797	KLHL22	chr22	20819180	+	KLHL22	chr22	20819538	-
intron-3UTR	ENST00000346329	ENST00000399231		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000346329	ENST00000356338		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000346329	ENST00000358212		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000346329	ENST00000399233		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-intron	ENST00000346329	ENST00000553916		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000301843	ENST00000399231		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000301843	ENST00000356338		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000301843	ENST00000358212		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000301843	ENST00000399233		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-intron	ENST00000301843	ENST00000553916		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000527622	ENST00000399231		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000527622	ENST00000356338		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000527622	ENST00000358212		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000527622	ENST00000399233		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-intron	ENST00000527622	ENST00000553916		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000376561	ENST00000399231		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000376561	ENST00000356338		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000376561	ENST00000358212		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000376561	ENST00000399233		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-intron	ENST00000376561	ENST00000553916		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000538675	ENST00000399231		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000538675	ENST00000356338		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000538675	ENST00000358212		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-3UTR	ENST00000538675	ENST00000399233		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
intron-intron	ENST00000538675	ENST00000553916		ChiTaRS3.1			BF946617	CTTN	chr11	70255640	+	MYO5A	chr15	52603337	-
Frame-shit	ENST00000216122	ENST00000216122		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
Frame-shit	ENST00000216122	ENST00000382011		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
5CDS-intron	ENST00000216122	ENST00000465557		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
Frame-shit	ENST00000382011	ENST00000216122		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
Frame-shit	ENST00000382011	ENST00000382011		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
5CDS-intron	ENST00000382011	ENST00000465557		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
intron-3CDS	ENST00000465557	ENST00000216122		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
intron-3CDS	ENST00000465557	ENST00000382011		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
intron-intron	ENST00000465557	ENST00000465557		ChiTaRS3.1			BF929196	MCM5	chr22	35819247	+	MCM5	chr22	35819313	-
In-frame	ENST00000392708	ENST00000348956		ChiTaRS3.1			EC545946	STT3A	chr11	125488374	+	CKB	chr14	103986376	-
In-frame	ENST00000529196	ENST00000348956		ChiTaRS3.1			EC545946	STT3A	chr11	125488374	+	CKB	chr14	103986376	-
In-frame	ENST00000531491	ENST00000348956		ChiTaRS3.1			EC545946	STT3A	chr11	125488374	+	CKB	chr14	103986376	-
intron-3CDS	ENST00000526364	ENST00000348956		ChiTaRS3.1			EC545946	STT3A	chr11	125488374	+	CKB	chr14	103986376	-
In-frame	ENST00000376170	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376170	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376170	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000359188	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000359188	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000359188	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376142	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376142	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376142	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376139	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376139	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376139	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376160	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376160	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376160	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376166	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376166	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376166	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376138	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376138	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376138	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000355394	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000355394	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000355394	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000490841	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000490841	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000490841	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376137	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376137	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376137	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000346832	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000346832	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000346832	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000536334	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000536334	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000536334	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376134	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376134	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376134	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
In-frame	ENST00000376140	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376140	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5CDS-intron	ENST00000376140	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5UTR-3CDS	ENST00000473481	ENST00000298912		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5UTR-intron	ENST00000473481	ENST00000557215		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
5UTR-intron	ENST00000473481	ENST00000556441		ChiTaRS3.1			DB121318	ABI1	chr10	27112066	-	CLMN	chr14	95670803	-
3UTR-3CDS	ENST00000252699	ENST00000302125		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
3UTR-3CDS	ENST00000252699	ENST00000412103		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
3UTR-intron	ENST00000252699	ENST00000457570		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000424234	ENST00000302125		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000424234	ENST00000412103		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-intron	ENST00000424234	ENST00000457570		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000390009	ENST00000302125		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000390009	ENST00000412103		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-intron	ENST00000390009	ENST00000457570		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000497637	ENST00000302125		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000497637	ENST00000412103		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-intron	ENST00000497637	ENST00000457570		ChiTaRS3.1			BM719952	ACTN4	chr19	39220941	-	MZB1	chr5	138723488	-
intron-3CDS	ENST00000309352	ENST00000309352		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-3CDS	ENST00000309352	ENST00000409963		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-intron	ENST00000309352	ENST00000585475		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-3CDS	ENST00000409963	ENST00000309352		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-3CDS	ENST00000409963	ENST00000409963		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-intron	ENST00000409963	ENST00000585475		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-3CDS	ENST00000585475	ENST00000309352		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-3CDS	ENST00000585475	ENST00000409963		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
intron-intron	ENST00000585475	ENST00000585475		ChiTaRS3.1			BE844032	MRPL38	chr17	73895809	+	MRPL38	chr17	73895053	-
5CDS-3UTR	ENST00000303577	ENST00000558401		ChiTaRS3.1			AW375728	PCBP1	chr2	70315524	-	B2M	chr15	45010026	+
5CDS-intron	ENST00000303577	ENST00000559916		ChiTaRS3.1			AW375728	PCBP1	chr2	70315524	-	B2M	chr15	45010026	+
5CDS-intron	ENST00000303577	ENST00000544417		ChiTaRS3.1			AW375728	PCBP1	chr2	70315524	-	B2M	chr15	45010026	+
5CDS-3UTR	ENST00000303577	ENST00000559220		ChiTaRS3.1			AW375728	PCBP1	chr2	70315524	-	B2M	chr15	45010026	+
3UTR-3CDS	ENST00000311852	ENST00000311852		ChiTaRS3.1			AW608079	MMP14	chr14	23315689	-	MMP14	chr14	23312509	+
3UTR-3UTR	ENST00000311852	ENST00000548162		ChiTaRS3.1			AW608079	MMP14	chr14	23315689	-	MMP14	chr14	23312509	+
intron-3CDS	ENST00000548162	ENST00000311852		ChiTaRS3.1			AW608079	MMP14	chr14	23315689	-	MMP14	chr14	23312509	+
intron-3UTR	ENST00000548162	ENST00000548162		ChiTaRS3.1			AW608079	MMP14	chr14	23315689	-	MMP14	chr14	23312509	+
intron-3CDS	ENST00000579925	ENST00000302538		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-3CDS	ENST00000579925	ENST00000544583		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000579925	ENST00000572441		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000579925	ENST00000574437		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000579925	ENST00000291107		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000579925	ENST00000543210		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000579925	ENST00000536794		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000579925	ENST00000573895		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-3CDS	ENST00000323456	ENST00000302538		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-3CDS	ENST00000323456	ENST00000544583		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000323456	ENST00000572441		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000323456	ENST00000574437		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000323456	ENST00000291107		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000323456	ENST00000543210		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000323456	ENST00000536794		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-intron	ENST00000323456	ENST00000573895		ChiTaRS3.1			BE714892	MTMR4	chr17	56581536	+	ABR	chr17	986868	-
intron-5UTR	ENST00000311713	ENST00000544021		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000311713	ENST00000266556		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-intron	ENST00000311713	ENST00000545700		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000278856	ENST00000544021		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000278856	ENST00000266556		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-intron	ENST00000278856	ENST00000545700		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000529106	ENST00000544021		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000529106	ENST00000266556		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-intron	ENST00000529106	ENST00000545700		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000525239	ENST00000544021		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000525239	ENST00000266556		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-intron	ENST00000525239	ENST00000545700		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000525752	ENST00000544021		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000525752	ENST00000266556		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-intron	ENST00000525752	ENST00000545700		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000540620	ENST00000544021		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-5UTR	ENST00000540620	ENST00000266556		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
intron-intron	ENST00000540620	ENST00000545700		ChiTaRS3.1			DA465939	WDR74	chr11	62609096	-	TAPBPL	chr12	6561272	+
Frame-shit	ENST00000456435	ENST00000369983		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
5CDS-intron	ENST00000456435	ENST00000476019		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
Frame-shit	ENST00000318967	ENST00000369983		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
5CDS-intron	ENST00000318967	ENST00000476019		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
Frame-shit	ENST00000435409	ENST00000369983		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
5CDS-intron	ENST00000435409	ENST00000476019		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
Frame-shit	ENST00000512605	ENST00000369983		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
5CDS-intron	ENST00000512605	ENST00000476019		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
3UTR-3CDS	ENST00000476843	ENST00000369983		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
3UTR-intron	ENST00000476843	ENST00000476019		ChiTaRS3.1			BE939808	INTS3	chr1	153742752	+	GBF1	chr10	104128176	+
Frame-shit	ENST00000356805	ENST00000380739		ChiTaRS3.1			AI861956	SPTBN1	chr2	54856109	-	SERPINB1	chr6	2840701	+
5CDS-5UTR	ENST00000356805	ENST00000537185		ChiTaRS3.1			AI861956	SPTBN1	chr2	54856109	-	SERPINB1	chr6	2840701	+
5CDS-5UTR	ENST00000356805	ENST00000476896		ChiTaRS3.1			AI861956	SPTBN1	chr2	54856109	-	SERPINB1	chr6	2840701	+
Frame-shit	ENST00000333896	ENST00000380739		ChiTaRS3.1			AI861956	SPTBN1	chr2	54856109	-	SERPINB1	chr6	2840701	+
5CDS-5UTR	ENST00000333896	ENST00000537185		ChiTaRS3.1			AI861956	SPTBN1	chr2	54856109	-	SERPINB1	chr6	2840701	+
5CDS-5UTR	ENST00000333896	ENST00000476896		ChiTaRS3.1			AI861956	SPTBN1	chr2	54856109	-	SERPINB1	chr6	2840701	+
intron-intron	ENST00000331320	ENST00000331320		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000331320	ENST00000406191		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000331320	ENST00000405646		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000331320	ENST00000435036		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000406191	ENST00000331320		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000406191	ENST00000406191		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000406191	ENST00000405646		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000406191	ENST00000435036		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000405646	ENST00000331320		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000405646	ENST00000406191		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000405646	ENST00000405646		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000405646	ENST00000435036		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000435036	ENST00000331320		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000435036	ENST00000406191		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000435036	ENST00000405646		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
intron-intron	ENST00000435036	ENST00000435036		ChiTaRS3.1			AA460861	MTA1	chr14	105935291	+	MTA1	chr14	105934539	+
5CDS-intron	ENST00000361565	ENST00000525842		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
5CDS-intron	ENST00000361565	ENST00000397753		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
5CDS-intron	ENST00000361565	ENST00000357899		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
5CDS-intron	ENST00000361565	ENST00000530205		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
intron-intron	ENST00000464348	ENST00000525842		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
intron-intron	ENST00000464348	ENST00000397753		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
intron-intron	ENST00000464348	ENST00000357899		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
intron-intron	ENST00000464348	ENST00000530205		ChiTaRS3.1			AW366675	IPO9	chr1	201845101	+	ZBTB44	chr11	130165627	-
intron-3UTR	ENST00000301785	ENST00000492242		ChiTaRS3.1			AI199579	HNRNPUL2	chr11	62482283	+	NRSN2	chr20	334253	-
intron-3UTR	ENST00000301785	ENST00000382291		ChiTaRS3.1			AI199579	HNRNPUL2	chr11	62482283	+	NRSN2	chr20	334253	-
intron-3UTR	ENST00000301785	ENST00000382285		ChiTaRS3.1			AI199579	HNRNPUL2	chr11	62482283	+	NRSN2	chr20	334253	-
intron-intron	ENST00000301785	ENST00000608736		ChiTaRS3.1			AI199579	HNRNPUL2	chr11	62482283	+	NRSN2	chr20	334253	-
intron-3CDS	ENST00000587394	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000587394	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000587394	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000587962	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000587962	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000587962	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000586608	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000586608	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000586608	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000589097	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000589097	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000589097	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000591099	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000591099	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000591099	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000326631	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000326631	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000326631	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000589791	ENST00000307296		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-3CDS	ENST00000589791	ENST00000457054		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
intron-intron	ENST00000589791	ENST00000498147		ChiTaRS3.1			BF940958	PLEKHJ1	chr19	2233521	+	PDCD6IP	chr3	33906742	+
5CDS-intron	ENST00000318008	ENST00000269051		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000318008	ENST00000538145		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000318008	ENST00000536287		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000433206	ENST00000269051		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000433206	ENST00000538145		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000433206	ENST00000536287		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000435347	ENST00000269051		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000435347	ENST00000538145		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
5CDS-intron	ENST00000435347	ENST00000536287		ChiTaRS3.1			BM846678	LASP1	chr17	37054772	+	RHBDL3	chr17	30651793	-
intron-3CDS	ENST00000348956	ENST00000348956		ChiTaRS3.1			BQ320356	CKB	chr14	103986637	-	CKB	chr14	103986507	+
intron-intron	ENST00000225964	ENST00000225964		ChiTaRS3.1			CV338064	COL1A1	chr17	48266868	-	COL1A1	chr17	48265456	+
intron-3CDS	ENST00000357214	ENST00000357214		ChiTaRS3.1			BF089022	SFPQ	chr1	35656157	+	SFPQ	chr1	35654636	-
intron-intron	ENST00000357214	ENST00000468598		ChiTaRS3.1			BF089022	SFPQ	chr1	35656157	+	SFPQ	chr1	35654636	-
intron-3CDS	ENST00000468598	ENST00000357214		ChiTaRS3.1			BF089022	SFPQ	chr1	35656157	+	SFPQ	chr1	35654636	-
intron-intron	ENST00000468598	ENST00000468598		ChiTaRS3.1			BF089022	SFPQ	chr1	35656157	+	SFPQ	chr1	35654636	-
Frame-shit	ENST00000366844	ENST00000366844		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000366844	ENST00000366843		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000366844	ENST00000284563		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
5CDS-5UTR	ENST00000366844	ENST00000391874		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000366843	ENST00000366844		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000366843	ENST00000366843		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000366843	ENST00000284563		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
5CDS-5UTR	ENST00000366843	ENST00000391874		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000284563	ENST00000366844		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000284563	ENST00000366843		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
Frame-shit	ENST00000284563	ENST00000284563		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
5CDS-5UTR	ENST00000284563	ENST00000391874		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
In-frame	ENST00000391874	ENST00000366844		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
In-frame	ENST00000391874	ENST00000366843		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
In-frame	ENST00000391874	ENST00000284563		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
5CDS-5UTR	ENST00000391874	ENST00000391874		ChiTaRS3.1			BF802940	ENAH	chr1	225706900	-	ENAH	chr1	225755117	-
3UTR-intron	ENST00000411630	ENST00000557878		ChiTaRS3.1			CN344563	DANCR	chr4	53579128	+	RNF31	chr14	24624160	+
3UTR-intron	ENST00000411630	ENST00000559275		ChiTaRS3.1			CN344563	DANCR	chr4	53579128	+	RNF31	chr14	24624160	+
3UTR-intron	ENST00000411630	ENST00000324103		ChiTaRS3.1			CN344563	DANCR	chr4	53579128	+	RNF31	chr14	24624160	+
3UTR-intron	ENST00000411630	ENST00000382687		ChiTaRS3.1			CN344563	DANCR	chr4	53579128	+	RNF31	chr14	24624160	+
intron-3UTR	ENST00000376170	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376170	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376170	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376170	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376170	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000359188	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000359188	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000359188	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000359188	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000359188	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376142	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376142	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376142	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376142	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376142	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376139	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376139	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376139	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376139	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376139	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376160	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376160	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376160	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376160	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376160	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376166	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376166	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376166	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376166	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376166	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376138	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376138	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376138	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376138	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376138	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000355394	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000355394	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000355394	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000355394	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000355394	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000490841	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000490841	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000490841	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000490841	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000490841	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376137	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376137	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376137	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376137	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376137	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000346832	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000346832	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000346832	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000346832	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000346832	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000536334	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000536334	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000536334	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000536334	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000536334	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376134	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376134	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376134	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376134	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376134	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376140	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376140	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000376140	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376140	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000376140	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000473481	ENST00000604560		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000473481	ENST00000452142		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3UTR	ENST00000473481	ENST00000267012		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000473481	ENST00000544402		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-intron	ENST00000473481	ENST00000603260		ChiTaRS3.1			BI024013	ABI1	chr10	27043418	-	BIN2	chr12	51674854	+
intron-3CDS	ENST00000369784	ENST00000355630		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000369784	ENST00000396617		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000369784	ENST00000402042		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000369784	ENST00000466278		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000369784	ENST00000407029		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000369784	ENST00000402630		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000487146	ENST00000355630		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000487146	ENST00000396617		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000487146	ENST00000402042		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000487146	ENST00000466278		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000487146	ENST00000407029		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000487146	ENST00000402630		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-3CDS	ENST00000602849	ENST00000355630		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-3CDS	ENST00000602849	ENST00000396617		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-3CDS	ENST00000602849	ENST00000402042		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-intron	ENST00000602849	ENST00000466278		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-intron	ENST00000602849	ENST00000407029		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-intron	ENST00000602849	ENST00000402630		ChiTaRS3.1			AF364035	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
In-frame	ENST00000268989	ENST00000307296		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
In-frame	ENST00000268989	ENST00000457054		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
5CDS-intron	ENST00000268989	ENST00000498147		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
In-frame	ENST00000426855	ENST00000307296		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
In-frame	ENST00000426855	ENST00000457054		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
5CDS-intron	ENST00000426855	ENST00000498147		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
In-frame	ENST00000574563	ENST00000307296		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
In-frame	ENST00000574563	ENST00000457054		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
5CDS-intron	ENST00000574563	ENST00000498147		ChiTaRS3.1			BE836849	SGSM2	chr17	2276295	-	PDCD6IP	chr3	33906874	+
intron-3UTR	ENST00000410075	ENST00000256852		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
intron-3UTR	ENST00000410075	ENST00000334889		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
intron-3UTR	ENST00000377802	ENST00000256852		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
intron-3UTR	ENST00000377802	ENST00000334889		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
intron-3UTR	ENST00000355812	ENST00000256852		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
intron-3UTR	ENST00000355812	ENST00000334889		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
5CDS-3UTR	ENST00000409544	ENST00000256852		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
5CDS-3UTR	ENST00000409544	ENST00000334889		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
5CDS-3UTR	ENST00000264447	ENST00000256852		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
5CDS-3UTR	ENST00000264447	ENST00000334889		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
5CDS-3UTR	ENST00000409407	ENST00000256852		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
5CDS-3UTR	ENST00000409407	ENST00000334889		ChiTaRS3.1			CN414592	ZNF638	chr2	71650579	+	RAX	chr18	56934332	-
Frame-shit	ENST00000342247	ENST00000323666		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000342247	ENST00000546753		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000342247	ENST00000261220		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000342247	ENST00000550777		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000342247	ENST00000551840		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400585	ENST00000323666		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400585	ENST00000546753		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400585	ENST00000261220		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400585	ENST00000550777		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400585	ENST00000551840		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
intron-3CDS	ENST00000497534	ENST00000323666		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
intron-3CDS	ENST00000497534	ENST00000546753		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
intron-3CDS	ENST00000497534	ENST00000261220		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
intron-3CDS	ENST00000497534	ENST00000550777		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
intron-3CDS	ENST00000497534	ENST00000551840		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400573	ENST00000323666		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400573	ENST00000546753		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400573	ENST00000261220		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400573	ENST00000550777		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000400573	ENST00000551840		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000262608	ENST00000323666		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000262608	ENST00000546753		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000262608	ENST00000261220		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000262608	ENST00000550777		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000262608	ENST00000551840		ChiTaRS3.1			CN366199	CECR2	chr22	17982151	+	METAP2	chr12	95867988	+
Frame-shit	ENST00000406337	ENST00000452400		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
5CDS-intron	ENST00000406337	ENST00000267974		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
5CDS-intron	ENST00000406337	ENST00000524223		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
In-frame	ENST00000265713	ENST00000452400		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
5CDS-intron	ENST00000265713	ENST00000267974		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
5CDS-intron	ENST00000265713	ENST00000524223		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
In-frame	ENST00000396930	ENST00000452400		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
5CDS-intron	ENST00000396930	ENST00000267974		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
5CDS-intron	ENST00000396930	ENST00000524223		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
intron-3CDS	ENST00000485568	ENST00000452400		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
intron-intron	ENST00000485568	ENST00000267974		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
intron-intron	ENST00000485568	ENST00000524223		ChiTaRS3.1			EF374064	KAT6A	chr8	41794774	-	NCOA2	chr8	71057084	-
In-frame	ENST00000330143	ENST00000262577		ChiTaRS3.1			CV030299	ZNF696	chr8	144375236	+	ZC3H3	chr8	144550832	-
Frame-shit	ENST00000521537	ENST00000262577		ChiTaRS3.1			CV030299	ZNF696	chr8	144375236	+	ZC3H3	chr8	144550832	-
In-frame	ENST00000520333	ENST00000262577		ChiTaRS3.1			CV030299	ZNF696	chr8	144375236	+	ZC3H3	chr8	144550832	-
intron-5UTR	ENST00000278949	ENST00000529163		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000278949	ENST00000394920		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000278949	ENST00000527914		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000278949	ENST00000262584		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000278949	ENST00000528957		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000525386	ENST00000529163		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000525386	ENST00000394920		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000525386	ENST00000527914		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000525386	ENST00000262584		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000525386	ENST00000528957		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000527472	ENST00000529163		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000527472	ENST00000394920		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000527472	ENST00000527914		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000527472	ENST00000262584		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-5UTR	ENST00000527472	ENST00000528957		ChiTaRS3.1			CV422156	MPZL3	chr11	118097589	-	RPL8	chr8	146015259	+
intron-intron	ENST00000405402	ENST00000367838		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000271357		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000367836		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000539777		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000537209		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000361697		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000546300		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000367835		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000405402	ENST00000485232		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000367838		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000271357		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000367836		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000539777		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000537209		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000361697		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000546300		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000367835		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000253458	ENST00000485232		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000367838		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000271357		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000367836		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000539777		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000537209		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000361697		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000546300		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000367835		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000393243	ENST00000485232		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000367838		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000271357		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000367836		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000539777		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000537209		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000361697		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000546300		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000367835		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000471070	ENST00000485232		ChiTaRS3.1			BG014025	GSE1	chr16	85667360	-	GPR161	chr1	168061667	-
intron-intron	ENST00000367498	ENST00000534307		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000367498	ENST00000528302		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000367498	ENST00000322535		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000459929	ENST00000534307		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000459929	ENST00000528302		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000459929	ENST00000322535		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000392007	ENST00000534307		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000392007	ENST00000528302		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000392007	ENST00000322535		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000367497	ENST00000534307		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000367497	ENST00000528302		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000367497	ENST00000322535		ChiTaRS3.1			AW603024	IVNS1ABP	chr1	185268917	+	SF3B2	chr11	65829447	-
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050806	KMT2A	chr11	118355313	+	AFF1	chr4	88012229	+
intron-3UTR	ENST00000548249	ENST00000301785		ChiTaRS3.1			AA612907	DCTN2	chr12	57924658	+	HNRNPUL2	chr11	62481201	+
intron-3UTR	ENST00000537439	ENST00000301785		ChiTaRS3.1			AA612907	DCTN2	chr12	57924658	+	HNRNPUL2	chr11	62481201	+
intron-3UTR	ENST00000434715	ENST00000301785		ChiTaRS3.1			AA612907	DCTN2	chr12	57924658	+	HNRNPUL2	chr11	62481201	+
intron-3UTR	ENST00000543672	ENST00000301785		ChiTaRS3.1			AA612907	DCTN2	chr12	57924658	+	HNRNPUL2	chr11	62481201	+
intron-3UTR	ENST00000551400	ENST00000301785		ChiTaRS3.1			AA612907	DCTN2	chr12	57924658	+	HNRNPUL2	chr11	62481201	+
3UTR-3UTR	ENST00000360289	ENST00000360289		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000360289	ENST00000448642		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000360289	ENST00000404387		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000360289	ENST00000298649		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000360289	ENST00000359426		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000360289	ENST00000494253		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000448642	ENST00000360289		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000448642	ENST00000448642		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000448642	ENST00000404387		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000448642	ENST00000298649		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000448642	ENST00000359426		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000448642	ENST00000494253		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000404387	ENST00000360289		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000404387	ENST00000448642		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-intron	ENST00000404387	ENST00000404387		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000404387	ENST00000298649		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000404387	ENST00000359426		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-intron	ENST00000404387	ENST00000494253		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000298649	ENST00000360289		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000298649	ENST00000448642		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000298649	ENST00000404387		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000298649	ENST00000298649		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000298649	ENST00000359426		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000298649	ENST00000494253		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000359426	ENST00000360289		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000359426	ENST00000448642		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000359426	ENST00000404387		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000359426	ENST00000298649		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-3UTR	ENST00000359426	ENST00000359426		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
3UTR-intron	ENST00000359426	ENST00000494253		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000494253	ENST00000360289		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000494253	ENST00000448642		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-intron	ENST00000494253	ENST00000404387		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000494253	ENST00000298649		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3UTR	ENST00000494253	ENST00000359426		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-intron	ENST00000494253	ENST00000494253		ChiTaRS3.1			AW841510	HK1	chr10	71161498	-	HK1	chr10	71161318	+
intron-3CDS	ENST00000586329	ENST00000360639		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
intron-3CDS	ENST00000586329	ENST00000394987		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
intron-3UTR	ENST00000586329	ENST00000567617		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
intron-3CDS	ENST00000592824	ENST00000360639		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
intron-3CDS	ENST00000592824	ENST00000394987		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
intron-3UTR	ENST00000592824	ENST00000567617		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000201647	ENST00000360639		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000201647	ENST00000394987		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
5CDS-3UTR	ENST00000201647	ENST00000567617		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000540810	ENST00000360639		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000540810	ENST00000394987		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
5CDS-3UTR	ENST00000540810	ENST00000567617		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000588359	ENST00000360639		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000588359	ENST00000394987		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
5CDS-3UTR	ENST00000588359	ENST00000567617		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000245618	ENST00000360639		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
Frame-shit	ENST00000245618	ENST00000394987		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
5CDS-3UTR	ENST00000245618	ENST00000567617		ChiTaRS3.1			BF883434	EPS8L1	chr19	55597791	-	C15orf39	chr15	75503124	-
In-frame	ENST00000322536	ENST00000324932		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000322536	ENST00000359171		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000322536	ENST00000355260		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000322536	ENST00000397004		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000322536	ENST00000397007		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
5CDS-intron	ENST00000322536	ENST00000488828		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000526794	ENST00000324932		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000526794	ENST00000359171		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000526794	ENST00000355260		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000526794	ENST00000397004		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
In-frame	ENST00000526794	ENST00000397007		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
5CDS-intron	ENST00000526794	ENST00000488828		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
intron-3CDS	ENST00000534221	ENST00000324932		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
intron-3CDS	ENST00000534221	ENST00000359171		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
intron-3CDS	ENST00000534221	ENST00000355260		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
intron-3CDS	ENST00000534221	ENST00000397004		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
intron-3CDS	ENST00000534221	ENST00000397007		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
intron-intron	ENST00000534221	ENST00000488828		ChiTaRS3.1			AB001342	DDX10	chr11	108549162	+	NUP98	chr11	3756556	-
Frame-shit	ENST00000533141	ENST00000348943		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
Frame-shit	ENST00000533141	ENST00000325495		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
5CDS-intron	ENST00000533141	ENST00000602219		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
Frame-shit	ENST00000399817	ENST00000348943		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
Frame-shit	ENST00000399817	ENST00000325495		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
5CDS-intron	ENST00000399817	ENST00000602219		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
Frame-shit	ENST00000602569	ENST00000348943		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
Frame-shit	ENST00000602569	ENST00000325495		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
5CDS-intron	ENST00000602569	ENST00000602219		ChiTaRS3.1			CN431814	IFITM2	chr11	309147	+	HNRNPM	chr19	8550628	+
intron-3CDS	ENST00000289968	ENST00000589123		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000346156		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000395111		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000586919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000341919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000590282		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000443272		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000289968	ENST00000588839		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000589123		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000346156		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000395111		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000586919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000341919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000590282		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000443272		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000441763	ENST00000588839		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000589123		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000346156		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000395111		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000586919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000341919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000590282		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000443272		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000303665	ENST00000588839		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000589123		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000346156		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000395111		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000586919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000341919		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000590282		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000443272		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000575975	ENST00000588839		ChiTaRS3.1			BF946388	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000404397	ENST00000406438		ChiTaRS3.1			BE705933	LBH	chr2	30480911	+	SMCR8	chr17	18228687	+
3UTR-intron	ENST00000395323	ENST00000406438		ChiTaRS3.1			BE705933	LBH	chr2	30480911	+	SMCR8	chr17	18228687	+
intron-intron	ENST00000406087	ENST00000406438		ChiTaRS3.1			BE705933	LBH	chr2	30480911	+	SMCR8	chr17	18228687	+
intron-intron	ENST00000401506	ENST00000406438		ChiTaRS3.1			BE705933	LBH	chr2	30480911	+	SMCR8	chr17	18228687	+
5CDS-intron	ENST00000467242	ENST00000406438		ChiTaRS3.1			BE705933	LBH	chr2	30480911	+	SMCR8	chr17	18228687	+
intron-intron	ENST00000407930	ENST00000406438		ChiTaRS3.1			BE705933	LBH	chr2	30480911	+	SMCR8	chr17	18228687	+
intron-intron	ENST00000394420	ENST00000405093		ChiTaRS3.1			AW837199	RSPRY1	chr16	57248940	-	MYH6	chr14	23853413	-
intron-intron	ENST00000394420	ENST00000356287		ChiTaRS3.1			AW837199	RSPRY1	chr16	57248940	-	MYH6	chr14	23853413	-
intron-intron	ENST00000537866	ENST00000405093		ChiTaRS3.1			AW837199	RSPRY1	chr16	57248940	-	MYH6	chr14	23853413	-
intron-intron	ENST00000537866	ENST00000356287		ChiTaRS3.1			AW837199	RSPRY1	chr16	57248940	-	MYH6	chr14	23853413	-
intron-intron	ENST00000563073	ENST00000405093		ChiTaRS3.1			AW837199	RSPRY1	chr16	57248940	-	MYH6	chr14	23853413	-
intron-intron	ENST00000563073	ENST00000356287		ChiTaRS3.1			AW837199	RSPRY1	chr16	57248940	-	MYH6	chr14	23853413	-
intron-3CDS	ENST00000341217	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000341217	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581407	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582266	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000452648	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000582059	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583953	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000577682	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000583522	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000341217		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000581407		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000582266		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000452648		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000582059		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000583953		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000577682		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000583522		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-3CDS	ENST00000581381	ENST00000581381		ChiTaRS3.1			CN426496	FAM222B	chr17	27085898	-	FAM222B	chr17	27093660	-
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266518	FLI1	chr11	128667504	+	EWSR1	chr22	29684300	+
3UTR-intron	ENST00000254950	ENST00000326003		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
3UTR-intron	ENST00000254950	ENST00000597483		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
3UTR-intron	ENST00000254950	ENST00000593997		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
3UTR-intron	ENST00000254950	ENST00000595952		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
3UTR-intron	ENST00000254950	ENST00000360617		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
intron-intron	ENST00000564399	ENST00000326003		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
intron-intron	ENST00000564399	ENST00000597483		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
intron-intron	ENST00000564399	ENST00000593997		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
intron-intron	ENST00000564399	ENST00000595952		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
intron-intron	ENST00000564399	ENST00000360617		ChiTaRS3.1			BE835094	VPS4A	chr16	69358477	+	KLK3	chr19	51361161	+
intron-3CDS	ENST00000311573	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000311573	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000311573	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000311573	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000368340	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000368340	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000368340	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000368340	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000347088	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000347088	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000347088	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000347088	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000361831	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000361831	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000361831	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000361831	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000355499	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000355499	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000355499	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000355499	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000404643	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000404643	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000404643	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000404643	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000407221	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000407221	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000407221	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000407221	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000359205	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000359205	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000359205	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000359205	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000295566	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000295566	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000295566	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000295566	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000368330	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000368330	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000368330	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000368330	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000368339	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000368339	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000368339	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000368339	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000535662	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000535662	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000535662	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000535662	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000405763	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000405763	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000405763	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000405763	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000438245	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000438245	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000438245	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000438245	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000476093	ENST00000319080		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-5UTR	ENST00000476093	ENST00000538698		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000476093	ENST00000377037		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-intron	ENST00000476093	ENST00000535996		ChiTaRS3.1			BI004450	YY1AP1	chr1	155630516	+	MLXIP	chr12	122617912	-
intron-3CDS	ENST00000462138	ENST00000462138		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000462138	ENST00000423525		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000462138	ENST00000461139		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000462138	ENST00000423516		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000462138	ENST00000296289		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000423525	ENST00000462138		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000423525	ENST00000423525		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000423525	ENST00000461139		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000423525	ENST00000423516		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000423525	ENST00000296289		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000461139	ENST00000462138		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000461139	ENST00000423525		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000461139	ENST00000461139		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000461139	ENST00000423516		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000461139	ENST00000296289		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000423516	ENST00000462138		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000423516	ENST00000423525		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000423516	ENST00000461139		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000423516	ENST00000423516		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000423516	ENST00000296289		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000296289	ENST00000462138		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-3CDS	ENST00000296289	ENST00000423525		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000296289	ENST00000461139		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000296289	ENST00000423516		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
intron-5UTR	ENST00000296289	ENST00000296289		ChiTaRS3.1			BF349570	TKT	chr3	53262347	+	TKT	chr3	53259918	+
In-frame	ENST00000280333	ENST00000280333		ChiTaRS3.1			BE930060	DOCK1	chr10	128904565	+	DOCK1	chr10	128859985	-
5CDS-intron	ENST00000280333	ENST00000484400		ChiTaRS3.1			BE930060	DOCK1	chr10	128904565	+	DOCK1	chr10	128859985	-
intron-3CDS	ENST00000484400	ENST00000280333		ChiTaRS3.1			BE930060	DOCK1	chr10	128904565	+	DOCK1	chr10	128859985	-
intron-intron	ENST00000484400	ENST00000484400		ChiTaRS3.1			BE930060	DOCK1	chr10	128904565	+	DOCK1	chr10	128859985	-
intron-3UTR	ENST00000330720	ENST00000301335		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-3UTR	ENST00000330720	ENST00000571650		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-3UTR	ENST00000330720	ENST00000382147		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-intron	ENST00000330720	ENST00000412517		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-intron	ENST00000330720	ENST00000574274		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-3UTR	ENST00000597017	ENST00000301335		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-3UTR	ENST00000597017	ENST00000571650		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-3UTR	ENST00000597017	ENST00000382147		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-intron	ENST00000597017	ENST00000412517		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-intron	ENST00000597017	ENST00000574274		ChiTaRS3.1			DR980769	KDELR1	chr19	48886049	+	SLC43A2	chr17	1477811	-
intron-3UTR	ENST00000334126	ENST00000244745		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000334126	ENST00000543472		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-3UTR	ENST00000313663	ENST00000244745		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000313663	ENST00000543472		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-3UTR	ENST00000542452	ENST00000244745		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000542452	ENST00000543472		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-3UTR	ENST00000539061	ENST00000244745		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000539061	ENST00000543472		ChiTaRS3.1			AX746958	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000324306	ENST00000324306		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000324306	ENST00000426572		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000324306	ENST00000535170		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000426572	ENST00000324306		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000426572	ENST00000426572		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000426572	ENST00000535170		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000535170	ENST00000324306		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000535170	ENST00000426572		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
intron-intron	ENST00000535170	ENST00000535170		ChiTaRS3.1			AW075417	ZKSCAN1	chr7	99629189	-	ZKSCAN1	chr7	99630076	-
3UTR-intron	ENST00000233143	ENST00000233143		ChiTaRS3.1			AA642818	TMSB10	chr2	85133736	+	TMSB10	chr2	85133795	-
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE719306	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
3UTR-intron	ENST00000340857	ENST00000342228		ChiTaRS3.1			BF748516	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000520262		ChiTaRS3.1			BF748516	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000520179		ChiTaRS3.1			BF748516	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000523340		ChiTaRS3.1			BF748516	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
intron-3CDS	ENST00000370532	ENST00000370532		ChiTaRS3.1			BE181320	CDR1	chrX	139866211	-	CDR1	chrX	139866327	+
intron-intron	ENST00000309311	ENST00000520791		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000309311	ENST00000523368		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000309311	ENST00000297565		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000309311	ENST00000435298		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000309311	ENST00000522510		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000309311	ENST00000457907		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000600720	ENST00000520791		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000600720	ENST00000523368		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000600720	ENST00000297565		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000600720	ENST00000435298		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000600720	ENST00000522510		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
intron-intron	ENST00000600720	ENST00000457907		ChiTaRS3.1			BQ308618	EEF2	chr19	3981364	-	OSR2	chr8	99961810	+
5UTR-3CDS	ENST00000379996	ENST00000397821		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
5UTR-3CDS	ENST00000379996	ENST00000379716		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
5UTR-3CDS	ENST00000379996	ENST00000379698		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
5UTR-3CDS	ENST00000379996	ENST00000541422		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
5UTR-3CDS	ENST00000379996	ENST00000379697		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
5UTR-5UTR	ENST00000379996	ENST00000477102		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000379989	ENST00000397821		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000379989	ENST00000379716		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000379989	ENST00000379698		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000379989	ENST00000541422		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000379989	ENST00000379697		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-5UTR	ENST00000379989	ENST00000477102		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000463994	ENST00000397821		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000463994	ENST00000379716		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000463994	ENST00000379698		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000463994	ENST00000541422		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-3CDS	ENST00000463994	ENST00000379697		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
intron-5UTR	ENST00000463994	ENST00000477102		ChiTaRS3.1			DA670155	CDKL5	chrX	18443816	+	SH3KBP1	chrX	19626164	-
5UTR-3CDS	ENST00000235307	ENST00000539605		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
5UTR-3CDS	ENST00000235307	ENST00000357997		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
5UTR-intron	ENST00000235307	ENST00000542282		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
5UTR-intron	ENST00000235307	ENST00000542657		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
5UTR-intron	ENST00000235307	ENST00000542374		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
5UTR-intron	ENST00000235307	ENST00000337516		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-3CDS	ENST00000367514	ENST00000539605		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-3CDS	ENST00000367514	ENST00000357997		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-intron	ENST00000367514	ENST00000542282		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-intron	ENST00000367514	ENST00000542657		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-intron	ENST00000367514	ENST00000542374		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-intron	ENST00000367514	ENST00000337516		ChiTaRS3.1			AI201468	C1orf21	chr1	184356466	+	ANKLE2	chr12	133331505	-
intron-3CDS	ENST00000411780	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000411780	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000411780	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000411780	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397137	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397137	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397137	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000397137	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000373537	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000373537	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000373537	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000373537	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000414542	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000414542	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000414542	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000414542	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397135	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397135	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397135	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000397135	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397134	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397134	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397134	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000397134	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397131	ENST00000377921		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397131	ENST00000345264		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-3CDS	ENST00000397131	ENST00000602389		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
intron-5UTR	ENST00000397131	ENST00000464074		ChiTaRS3.1			BF734311	BLCAP	chr20	36151536	+	RSU1	chr10	16635440	-
3UTR-3CDS	ENST00000296456	ENST00000296456		ChiTaRS3.1			AA639921	APEH	chr3	49720829	+	APEH	chr3	49720560	-
3UTR-3CDS	ENST00000296456	ENST00000438011		ChiTaRS3.1			AA639921	APEH	chr3	49720829	+	APEH	chr3	49720560	-
intron-3CDS	ENST00000438011	ENST00000296456		ChiTaRS3.1			AA639921	APEH	chr3	49720829	+	APEH	chr3	49720560	-
intron-3CDS	ENST00000438011	ENST00000438011		ChiTaRS3.1			AA639921	APEH	chr3	49720829	+	APEH	chr3	49720560	-
intron-intron	ENST00000409731	ENST00000409731		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409731	ENST00000345517		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409731	ENST00000409918		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409731	ENST00000409624		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000345517	ENST00000409731		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000345517	ENST00000345517		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000345517	ENST00000409918		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000345517	ENST00000409624		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409918	ENST00000409731		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409918	ENST00000345517		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409918	ENST00000409918		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409918	ENST00000409624		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409624	ENST00000409731		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409624	ENST00000345517		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409624	ENST00000409918		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-intron	ENST00000409624	ENST00000409624		ChiTaRS3.1			BX481590	ACTG2	chr2	74138601	-	ACTG2	chr1	27190947	-
intron-3UTR	ENST00000368708	ENST00000330777		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368708	ENST00000520004		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000487430	ENST00000330777		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000487430	ENST00000520004		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000497140	ENST00000330777		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000497140	ENST00000520004		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368710	ENST00000330777		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368710	ENST00000520004		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368709	ENST00000330777		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368709	ENST00000520004		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368707	ENST00000330777		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000368707	ENST00000520004		ChiTaRS3.1			CA313696	S100A2	chr1	153533877	+	SGK223	chr8	8175411	-
intron-3UTR	ENST00000372189	ENST00000535572		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372189	ENST00000537687		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372189	ENST00000315939		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372189	ENST00000447667		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372189	ENST00000530271		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372189	ENST00000540360		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372189	ENST00000340908		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372189	ENST00000574564		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372195	ENST00000535572		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372195	ENST00000537687		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372195	ENST00000315939		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372195	ENST00000447667		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372195	ENST00000530271		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372195	ENST00000540360		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372195	ENST00000340908		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372195	ENST00000574564		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372190	ENST00000535572		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372190	ENST00000537687		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372190	ENST00000315939		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372190	ENST00000447667		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372190	ENST00000530271		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372190	ENST00000540360		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000372190	ENST00000340908		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000372190	ENST00000574564		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000481260	ENST00000535572		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000481260	ENST00000537687		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000481260	ENST00000315939		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000481260	ENST00000447667		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000481260	ENST00000530271		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000481260	ENST00000540360		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3UTR	ENST00000481260	ENST00000340908		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-intron	ENST00000481260	ENST00000574564		ChiTaRS3.1			BE836721	RAPGEF1	chr9	134470915	+	WNK1	chr12	1019356	+
intron-3CDS	ENST00000390237	ENST00000390237		ChiTaRS3.1			AA745567	IGKC	chr2	89156947	+	IGKC	chr2	89156883	-
intron-3CDS	ENST00000346169	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000346169	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000414031	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000392537	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000382330	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000350481	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000352767	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000427845	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000342981	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000319274	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000424196	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000411531	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000441154	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000434061	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000346169		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000414031		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000392537		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000382330		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000350481		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000352767		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000427845		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000342981		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000319274		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000424196		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000411531		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000441154		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000434061		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000435046	ENST00000435046		ChiTaRS3.1			BF734084	EIF4G1	chr3	184045002	-	EIF4G1	chr3	184039685	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766255	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766255	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
3UTR-3CDS	ENST00000372836	ENST00000356286		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-3CDS	ENST00000372836	ENST00000353660		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-3CDS	ENST00000372836	ENST00000382181		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-intron	ENST00000372836	ENST00000475269		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-intron	ENST00000372836	ENST00000400245		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-intron	ENST00000372836	ENST00000400247		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-3CDS	ENST00000394142	ENST00000356286		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-3CDS	ENST00000394142	ENST00000353660		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-3CDS	ENST00000394142	ENST00000382181		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-intron	ENST00000394142	ENST00000475269		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-intron	ENST00000394142	ENST00000400245		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
3UTR-intron	ENST00000394142	ENST00000400247		ChiTaRS3.1			BF760706	CNPY3	chr6	42906619	-	RBCK1	chr20	409593	+
Frame-shit	ENST00000446571	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000446571	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000446571	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000446571	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000446571	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000357984	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000357984	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000357984	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000357984	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000357984	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000538716	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000538716	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000538716	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000538716	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000538716	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000587989	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000587989	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000587989	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000587989	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000587989	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000590235	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000590235	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000590235	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000590235	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000590235	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000319511	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000319511	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000319511	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000319511	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000319511	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000589785	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000589785	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000589785	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000589785	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589785	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000592825	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000592825	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000592825	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000592825	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000592825	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
Frame-shit	ENST00000589184	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000589184	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000589184	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
In-frame	ENST00000589184	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
5CDS-intron	ENST00000589184	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-3CDS	ENST00000589856	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-3CDS	ENST00000589856	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-3CDS	ENST00000589856	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-3CDS	ENST00000589856	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000589856	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000587172	ENST00000446571		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000587172	ENST00000357984		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000587172	ENST00000538716		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-3CDS	ENST00000587172	ENST00000587989		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000590235		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000319511		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000589785		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000592825		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000589184		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000589856		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
3UTR-intron	ENST00000587172	ENST00000587172		ChiTaRS3.1			BF754907	TMUB2	chr17	42268019	+	TMUB2	chr17	42266803	+
intron-intron	ENST00000418931	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000418931	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000418931	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000535465	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000535465	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000471184	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000471184	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000411749	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411749	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000441981	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441981	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000474044	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000474044	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000550949	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000550949	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000383102	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000383102	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000441857	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000441857	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000551599	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000551599	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000548608	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548608	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000492916	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000492916	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000454006	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000454006	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000411424	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411424	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000548235	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548235	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000472101	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000472101	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000425130	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000425130	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000411558	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000411558	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000481615	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000481615	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000553195	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000553195	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000399500	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399500	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000399491	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000399491	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000548907	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548907	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000469961	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000469961	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000415996	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000415996	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000447783	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000447783	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000548074	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000548074	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000491972	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000491972	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-5UTR	ENST00000433800	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000433800	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-5UTR	ENST00000444931	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000444931	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-5UTR	ENST00000552574	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
5CDS-intron	ENST00000552574	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000418931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000535465		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000471184		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000411749		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000441981		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000474044		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000550949		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000383102		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000441857		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000551599		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000548608		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000492916		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000454006		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000411424		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000548235		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000472101		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000425130		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000411558		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000481615		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000553195		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000399500		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000399491		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000548907		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000469961		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000415996		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000447783		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000548074		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000491972		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000433800		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000444931		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-5UTR	ENST00000461155	ENST00000552574		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-intron	ENST00000461155	ENST00000461155		ChiTaRS3.1			BF929236	HLA-DPB1	chr6	4533499	+	HLA-DPB1	chr6	4533408	-
intron-3UTR	ENST00000608083	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000608083	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000377855	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000377855	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000545482	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000545482	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000361521	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000361521	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000377842	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000377842	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000377845	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000377845	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000541130	ENST00000372336		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-intron	ENST00000541130	ENST00000372333		ChiTaRS3.1			AI366331	ACOT7	chr1	6445576	+	ZCCHC24	chr10	81142921	-
intron-3UTR	ENST00000401084	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000401084	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000401084	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000401084	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000401084	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000401084	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000401084	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264203	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264203	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264203	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000264203	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000264203	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000264203	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264203	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375142	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375142	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375142	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000375142	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000375142	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000375142	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375142	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000433834	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000433834	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000433834	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000433834	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000433834	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000433834	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000433834	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264202	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264202	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264202	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000264202	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000264202	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000264202	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000264202	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000482808	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000482808	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000482808	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000482808	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000482808	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000482808	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000482808	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375144	ENST00000401084		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375144	ENST00000264203		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375144	ENST00000375142		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000375144	ENST00000433834		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000375144	ENST00000264202		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-intron	ENST00000375144	ENST00000482808		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
intron-3UTR	ENST00000375144	ENST00000375144		ChiTaRS3.1			AW292885	CAPZB	chr1	19665720	+	CAPZB	chr1	19665634	-
Frame-shit	ENST00000349048	ENST00000349048		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
Frame-shit	ENST00000349048	ENST00000403390		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
5CDS-intron	ENST00000349048	ENST00000496824		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
Frame-shit	ENST00000403390	ENST00000349048		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
Frame-shit	ENST00000403390	ENST00000403390		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
5CDS-intron	ENST00000403390	ENST00000496824		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
3UTR-3CDS	ENST00000496824	ENST00000349048		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
3UTR-3CDS	ENST00000496824	ENST00000403390		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
3UTR-intron	ENST00000496824	ENST00000496824		ChiTaRS3.1			BI060191	PFKL	chr21	45732161	-	PFKL	chr21	45746701	-
Frame-shit	ENST00000247933	ENST00000247933		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
Frame-shit	ENST00000247933	ENST00000453894		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
5CDS-intron	ENST00000247933	ENST00000509744		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
5CDS-intron	ENST00000247933	ENST00000514224		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
Frame-shit	ENST00000453894	ENST00000247933		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
Frame-shit	ENST00000453894	ENST00000453894		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
5CDS-intron	ENST00000453894	ENST00000509744		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
5CDS-intron	ENST00000453894	ENST00000514224		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
intron-3CDS	ENST00000509744	ENST00000247933		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
intron-3CDS	ENST00000509744	ENST00000453894		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
intron-intron	ENST00000509744	ENST00000509744		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
intron-intron	ENST00000509744	ENST00000514224		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
Frame-shit	ENST00000514224	ENST00000247933		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
Frame-shit	ENST00000514224	ENST00000453894		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
5CDS-intron	ENST00000514224	ENST00000509744		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
5CDS-intron	ENST00000514224	ENST00000514224		ChiTaRS3.1			AW136332	IDUA	chr4	996572	-	IDUA	chr4	997882	-
intron-intron	ENST00000461183	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000461183	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000461183	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000305690	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000305690	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000305690	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000473032	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000473032	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000473032	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000354773	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000354773	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000354773	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000471180	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000471180	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000471180	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000436784	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000436784	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
3UTR-intron	ENST00000436784	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000477382	ENST00000327495		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000477382	ENST00000595140		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-intron	ENST00000477382	ENST00000490592		ChiTaRS3.1			BU752122	GLYCTK	chr3	52327412	-	PSG3	chr19	43262184	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766324	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766324	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM766818	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM766818	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM766818	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM766818	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3UTR	ENST00000262030	ENST00000262030		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-3UTR	ENST00000262030	ENST00000552919		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-intron	ENST00000262030	ENST00000550162		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-3UTR	ENST00000552919	ENST00000262030		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-3UTR	ENST00000552919	ENST00000552919		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-intron	ENST00000552919	ENST00000550162		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-3UTR	ENST00000550162	ENST00000262030		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-3UTR	ENST00000550162	ENST00000552919		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
intron-intron	ENST00000550162	ENST00000550162		ChiTaRS3.1			CA312538	ATP5B	chr12	57032030	+	ATP5B	chr12	57032081	-
In-frame	ENST00000254806	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000254806	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000254806	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000254806	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000254806	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000254806	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-intron	ENST00000254806	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000585462	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000585462	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000585462	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000585462	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000585462	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000585462	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-intron	ENST00000585462	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000591399	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000591399	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000591399	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000591399	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000591399	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000591399	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-intron	ENST00000591399	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000590221	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000590221	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000590221	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000590221	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000590221	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000590221	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-intron	ENST00000590221	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000344296	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000344296	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
Frame-shit	ENST00000344296	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000344296	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000344296	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000344296	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-intron	ENST00000344296	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000433525	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000433525	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
In-frame	ENST00000433525	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000433525	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000433525	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-3UTR	ENST00000433525	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5CDS-intron	ENST00000433525	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-3CDS	ENST00000590450	ENST00000245544		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-3CDS	ENST00000590450	ENST00000541827		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-3CDS	ENST00000590450	ENST00000579324		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-3UTR	ENST00000590450	ENST00000449421		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-3UTR	ENST00000590450	ENST00000579298		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-3UTR	ENST00000590450	ENST00000447371		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
5UTR-intron	ENST00000590450	ENST00000540768		ChiTaRS3.1			DB001249	WBP2	chr17	73847647	-	NUP85	chr17	73211843	+
intron-intron	ENST00000388742	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388742	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388742	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388742	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388742	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388742	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388742	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000340726	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388740	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000303824	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388741	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000388743	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000388742		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000340726		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000388740		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000303824		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000388741		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000388743		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
intron-intron	ENST00000419131	ENST00000419131		ChiTaRS3.1			BF951576	EYA1	chr8	72246411	+	EYA1	chr8	72211282	+
In-frame	ENST00000447399	ENST00000373610		ChiTaRS3.1			BG015280	SWAP70	chr11	9754257	+	TXLNA	chr1	32659681	+
In-frame	ENST00000447399	ENST00000373609		ChiTaRS3.1			BG015280	SWAP70	chr11	9754257	+	TXLNA	chr1	32659681	+
In-frame	ENST00000318950	ENST00000373610		ChiTaRS3.1			BG015280	SWAP70	chr11	9754257	+	TXLNA	chr1	32659681	+
In-frame	ENST00000318950	ENST00000373609		ChiTaRS3.1			BG015280	SWAP70	chr11	9754257	+	TXLNA	chr1	32659681	+
intron-intron	ENST00000390168	ENST00000390168		ChiTaRS3.1			BF997148	H19	chr11	2016802	-	H19	chr11	2016762	+
intron-intron	ENST00000373555	ENST00000559488		ChiTaRS3.1			BI059143	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000571680		ChiTaRS3.1			BI059143	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000435993		ChiTaRS3.1			BI059143	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000560629		ChiTaRS3.1			BI059143	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-5UTR	ENST00000259455	ENST00000366667		ChiTaRS3.1			DA142897	GABBR2	chr9	101051796	-	AGT	chr1	230849867	-
intron-5UTR	ENST00000477471	ENST00000366667		ChiTaRS3.1			DA142897	GABBR2	chr9	101051796	-	AGT	chr1	230849867	-
5CDS-3UTR	ENST00000342382	ENST00000332598		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
5CDS-intron	ENST00000342382	ENST00000507578		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
5CDS-3UTR	ENST00000303525	ENST00000332598		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
5CDS-intron	ENST00000303525	ENST00000507578		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
5CDS-3UTR	ENST00000382021	ENST00000332598		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
5CDS-intron	ENST00000382021	ENST00000507578		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
intron-3UTR	ENST00000512136	ENST00000332598		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
intron-intron	ENST00000512136	ENST00000507578		ChiTaRS3.1			BM794419	DNAJC21	chr5	34941216	-	TMED9	chr5	177023030	+
intron-intron	ENST00000319359	ENST00000319359		ChiTaRS3.1			AA063240	ELL3	chr15	44085995	-	ELL3	chr15	44085951	+
intron-intron	ENST00000319359	ENST00000497465		ChiTaRS3.1			AA063240	ELL3	chr15	44085995	-	ELL3	chr15	44085951	+
intron-intron	ENST00000497465	ENST00000319359		ChiTaRS3.1			AA063240	ELL3	chr15	44085995	-	ELL3	chr15	44085951	+
intron-intron	ENST00000497465	ENST00000497465		ChiTaRS3.1			AA063240	ELL3	chr15	44085995	-	ELL3	chr15	44085951	+
In-frame	ENST00000302068	ENST00000302068		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
5CDS-5UTR	ENST00000302068	ENST00000509493		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
5CDS-3UTR	ENST00000302068	ENST00000502545		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
Frame-shit	ENST00000509493	ENST00000302068		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
5CDS-5UTR	ENST00000509493	ENST00000509493		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
5CDS-3UTR	ENST00000509493	ENST00000502545		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
3UTR-3CDS	ENST00000502545	ENST00000302068		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
3UTR-5UTR	ENST00000502545	ENST00000509493		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
3UTR-3UTR	ENST00000502545	ENST00000502545		ChiTaRS3.1			AI065122	FGB	chr4	155491723	+	FGB	chr4	155488755	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766322	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766322	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000356462	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000356462	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000356462	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000356462	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000356462	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000356462	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000356462	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000400345	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000400345	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000400345	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000400345	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000400345	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000400345	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000400345	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000589054	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000589054	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000589054	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000589054	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000589054	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000589054	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000589054	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256832	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256832	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000256832	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256832	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256832	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000256832	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000256832	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000382850	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000382850	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000382850	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000382850	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000382850	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000382850	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000382850	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256830	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256830	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000256830	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256830	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000256830	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000256830	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000256830	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000588516	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000588516	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000588516	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000588516	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000588516	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000588516	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000588516	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456986	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456986	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000456986	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456986	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456986	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000456986	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000456986	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000435432	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000435432	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000435432	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000435432	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000435432	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000435432	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000435432	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000357895	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000357895	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000357895	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000357895	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000357895	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000357895	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000357895	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000586263	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000586263	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000586263	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000586263	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000586263	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000586263	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000586263	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456173	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456173	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000456173	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456173	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000456173	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000456173	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000456173	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000431212	ENST00000424272		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000431212	ENST00000409929		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000431212	ENST00000409589		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000431212	ENST00000409329		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-intron	ENST00000431212	ENST00000409288		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000431212	ENST00000410023		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
intron-3UTR	ENST00000431212	ENST00000233946		ChiTaRS3.1			BE842555	NEDD4L	chr18	56042192	+	IL1R1	chr2	102794735	-
3UTR-3UTR	ENST00000380629	ENST00000395938		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000380629	ENST00000312280		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000380629	ENST00000494511		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000380629	ENST00000395936		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-intron	ENST00000380629	ENST00000426385		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000523515	ENST00000395938		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000523515	ENST00000312280		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000523515	ENST00000494511		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000523515	ENST00000395936		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-intron	ENST00000523515	ENST00000426385		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000520409	ENST00000395938		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000520409	ENST00000312280		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000520409	ENST00000494511		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000520409	ENST00000395936		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-intron	ENST00000520409	ENST00000426385		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000518611	ENST00000395938		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000518611	ENST00000312280		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000518611	ENST00000494511		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-3UTR	ENST00000518611	ENST00000395936		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
3UTR-intron	ENST00000518611	ENST00000426385		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000521254	ENST00000395938		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000521254	ENST00000312280		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000521254	ENST00000494511		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000521254	ENST00000395936		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-intron	ENST00000521254	ENST00000426385		ChiTaRS3.1			AI081942	BNIP3L	chr8	26268430	-	PMP22	chr17	15134169	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835140	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000401722	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000228318	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
5UTR-3CDS	ENST00000188376	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000551917	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000552981	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000551265	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000547534	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000549338	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
5UTR-3CDS	ENST00000548847	ENST00000361246		ChiTaRS3.1			BQ674428	SLC25A3	chr12	98987693	+	CDC42BPB	chr14	103410290	-
intron-3CDS	ENST00000323703	ENST00000323703		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-3CDS	ENST00000323703	ENST00000407879		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-5UTR	ENST00000323703	ENST00000491924		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-3CDS	ENST00000407879	ENST00000323703		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-3CDS	ENST00000407879	ENST00000407879		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-5UTR	ENST00000407879	ENST00000491924		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-3CDS	ENST00000491924	ENST00000323703		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-3CDS	ENST00000491924	ENST00000407879		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
intron-5UTR	ENST00000491924	ENST00000491924		ChiTaRS3.1			AI695170	ZNF513	chr2	27603583	+	ZNF513	chr2	27600740	+
Frame-shit	ENST00000511216	ENST00000351989		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000511216	ENST00000383024		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000511216	ENST00000407755		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000351989		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000383024		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000407755		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000351989		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000383024		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000407755		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000351989		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000383024		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000407755		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000351989		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000383024		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000407755		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000351989		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000383024		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000407755		ChiTaRS3.1			BF059181	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-intron	ENST00000393721	ENST00000393721		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000393721	ENST00000370028		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000393721	ENST00000350060		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000393721	ENST00000370016		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000393721	ENST00000537206		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000393721	ENST00000467421		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370028	ENST00000393721		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370028	ENST00000370028		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370028	ENST00000350060		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370028	ENST00000370016		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370028	ENST00000537206		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370028	ENST00000467421		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000350060	ENST00000393721		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000350060	ENST00000370028		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000350060	ENST00000350060		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000350060	ENST00000370016		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000350060	ENST00000537206		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000350060	ENST00000467421		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370016	ENST00000393721		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370016	ENST00000370028		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370016	ENST00000350060		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370016	ENST00000370016		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370016	ENST00000537206		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000370016	ENST00000467421		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000537206	ENST00000393721		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000537206	ENST00000370028		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000537206	ENST00000350060		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000537206	ENST00000370016		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000537206	ENST00000537206		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000537206	ENST00000467421		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000467421	ENST00000393721		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000467421	ENST00000370028		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000467421	ENST00000350060		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000467421	ENST00000370016		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000467421	ENST00000537206		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000467421	ENST00000467421		ChiTaRS3.1			EL583420	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191341	-
intron-intron	ENST00000216181	ENST00000229729		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000544672		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000375562		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000465707		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000417894		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000550821		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000550401		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000492911		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000453831		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000546461		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000551168		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000495620		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000425238		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000548188		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000549663		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000469478		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000415517		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000547288		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000547493		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000463111		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000383379		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000547684		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000549677		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000497745		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000366281		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000442152		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000553147		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000553121		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000216181	ENST00000495181		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000229729		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000544672		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000375562		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000465707		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000417894		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000550821		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000550401		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000492911		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000453831		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000546461		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000551168		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000495620		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000425238		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000548188		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000549663		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000469478		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000415517		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000547288		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000547493		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000463111		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000383379		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000547684		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000549677		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000497745		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000366281		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000442152		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000553147		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000553121		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000475726	ENST00000495181		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000229729		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000544672		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000375562		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000465707		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000417894		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000550821		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000550401		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000492911		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000453831		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000546461		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000551168		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000495620		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000425238		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000548188		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000549663		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000469478		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000415517		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000547288		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000547493		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000463111		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000383379		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000547684		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000549677		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000497745		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000366281		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000442152		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000553147		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000553121		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-intron	ENST00000401701	ENST00000495181		ChiTaRS3.1			BI026665	MYH9	chr22	36727986	-	SLC44A4	chr6	3171501	-
intron-3UTR	ENST00000477396	ENST00000347136		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-3UTR	ENST00000477396	ENST00000372406		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-3UTR	ENST00000477396	ENST00000372410		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-intron	ENST00000477396	ENST00000415344		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-3UTR	ENST00000298545	ENST00000347136		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-3UTR	ENST00000298545	ENST00000372406		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-3UTR	ENST00000298545	ENST00000372410		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
intron-intron	ENST00000298545	ENST00000415344		ChiTaRS3.1			BF957859	AK8	chr9	135734546	-	GPR107	chr9	132898239	+
Frame-shit	ENST00000234677	ENST00000301012		ChiTaRS3.1			BF958883	SARS	chr1	109780479	-	MVD	chr16	88719798	+
5CDS-intron	ENST00000234677	ENST00000568709		ChiTaRS3.1			BF958883	SARS	chr1	109780479	-	MVD	chr16	88719798	+
In-frame	ENST00000369923	ENST00000301012		ChiTaRS3.1			BF958883	SARS	chr1	109780479	-	MVD	chr16	88719798	+
5CDS-intron	ENST00000369923	ENST00000568709		ChiTaRS3.1			BF958883	SARS	chr1	109780479	-	MVD	chr16	88719798	+
3UTR-3CDS	ENST00000468588	ENST00000301012		ChiTaRS3.1			BF958883	SARS	chr1	109780479	-	MVD	chr16	88719798	+
3UTR-intron	ENST00000468588	ENST00000568709		ChiTaRS3.1			BF958883	SARS	chr1	109780479	-	MVD	chr16	88719798	+
5UTR-3CDS	ENST00000372134	ENST00000372134		ChiTaRS3.1			AU185081	GHITM	chr10	85901247	-	GHITM	chr10	85904670	-
intron-intron	ENST00000580900	ENST00000580900		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000580900	ENST00000380172		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000580900	ENST00000460874		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000580900	ENST00000427788		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000380172	ENST00000580900		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000380172	ENST00000380172		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000380172	ENST00000460874		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000380172	ENST00000427788		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000460874	ENST00000580900		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000460874	ENST00000380172		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000460874	ENST00000460874		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000460874	ENST00000427788		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000427788	ENST00000580900		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000427788	ENST00000380172		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000427788	ENST00000460874		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
intron-intron	ENST00000427788	ENST00000427788		ChiTaRS3.1			CN365873	MTAP	chr9	21971017	+	MTAP	chr9	21974777	-
5CDS-3UTR	ENST00000078429	ENST00000233735		ChiTaRS3.1			CK818891	GNA11	chr19	3119254	+	REG1A	chr2	79350483	+
3UTR-3UTR	ENST00000586180	ENST00000233735		ChiTaRS3.1			CK818891	GNA11	chr19	3119254	+	REG1A	chr2	79350483	+
intron-3CDS	ENST00000264211	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000264211	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000264211	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000264211	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000264211	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000264211	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000264211	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000264211	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000264211	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000264211	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000264211	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000400422	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000400422	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000400422	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000400422	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000400422	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000400422	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000400422	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000400422	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000400422	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000400422	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000400422	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000602326	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000602326	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000602326	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000602326	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000602326	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000602326	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000602326	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000602326	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000602326	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000602326	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000602326	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374935	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374935	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374935	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374935	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374935	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374935	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374935	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374935	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374935	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374935	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374935	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374937	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374937	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374937	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374937	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374937	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374937	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374937	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374937	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374937	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374937	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374937	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000536266	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000536266	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000536266	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000536266	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000536266	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000536266	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000536266	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000536266	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000536266	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000536266	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000536266	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374933	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374933	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374933	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374933	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374933	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374933	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374933	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374933	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374933	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374933	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374933	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000544689	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000544689	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000544689	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000544689	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000544689	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000544689	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000544689	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000544689	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000544689	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000544689	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000544689	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000356916	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000356916	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000356916	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000356916	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000356916	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000356916	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000356916	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000356916	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000356916	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000356916	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000356916	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374927	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374927	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374927	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374927	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374927	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000374927	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374927	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374927	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374927	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374927	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000374927	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000537738	ENST00000264211		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000537738	ENST00000400422		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000537738	ENST00000602326		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000537738	ENST00000374935		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000537738	ENST00000374937		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000537738	ENST00000536266		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000537738	ENST00000374933		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000537738	ENST00000544689		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000537738	ENST00000356916		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000537738	ENST00000374927		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-intron	ENST00000537738	ENST00000537738		ChiTaRS3.1			BE004894	EIF4G3	chr1	21191650	-	EIF4G3	chr1	21191078	+
intron-3CDS	ENST00000215832	ENST00000296292		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000215832	ENST00000394738		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000398822	ENST00000296292		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000398822	ENST00000394738		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000544786	ENST00000296292		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000544786	ENST00000394738		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000491588	ENST00000296292		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000491588	ENST00000394738		ChiTaRS3.1			AW376337	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
In-frame	ENST00000413916	ENST00000260356		ChiTaRS3.1			AA078623	ZMIZ2	chr7	44802950	-	THBS1	chr15	39882736	-
In-frame	ENST00000309315	ENST00000260356		ChiTaRS3.1			AA078623	ZMIZ2	chr7	44802950	-	THBS1	chr15	39882736	-
In-frame	ENST00000441627	ENST00000260356		ChiTaRS3.1			AA078623	ZMIZ2	chr7	44802950	-	THBS1	chr15	39882736	-
In-frame	ENST00000433667	ENST00000260356		ChiTaRS3.1			AA078623	ZMIZ2	chr7	44802950	-	THBS1	chr15	39882736	-
In-frame	ENST00000265346	ENST00000260356		ChiTaRS3.1			AA078623	ZMIZ2	chr7	44802950	-	THBS1	chr15	39882736	-
intron-3CDS	ENST00000463931	ENST00000260356		ChiTaRS3.1			AA078623	ZMIZ2	chr7	44802950	-	THBS1	chr15	39882736	-
5UTR-3CDS	ENST00000373566	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000373566	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-intron	ENST00000373566	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000373563	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000373563	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-intron	ENST00000373563	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409480	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409480	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-intron	ENST00000409480	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409547	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409547	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-intron	ENST00000409547	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409196	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409196	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-intron	ENST00000409196	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409451	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-3CDS	ENST00000409451	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
5UTR-intron	ENST00000409451	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
3UTR-3CDS	ENST00000482666	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
3UTR-3CDS	ENST00000482666	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
3UTR-intron	ENST00000482666	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
intron-3CDS	ENST00000452341	ENST00000392133		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
intron-3CDS	ENST00000452341	ENST00000392132		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
intron-intron	ENST00000452341	ENST00000471649		ChiTaRS3.1			DA473382	GIGYF2	chr2	233562103	+	XRCC5	chr2	216977736	+
intron-3CDS	ENST00000380518	ENST00000380518		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-5UTR	ENST00000380518	ENST00000493991		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-5UTR	ENST00000380518	ENST00000337299		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-3CDS	ENST00000493991	ENST00000380518		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-5UTR	ENST00000493991	ENST00000493991		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-5UTR	ENST00000493991	ENST00000337299		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-3CDS	ENST00000337299	ENST00000380518		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-5UTR	ENST00000337299	ENST00000493991		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-5UTR	ENST00000337299	ENST00000337299		ChiTaRS3.1			CN406547	COL2A1	chr12	48380957	+	COL2A1	chr12	48380893	-
intron-3CDS	ENST00000393500	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393500	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393500	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393500	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393500	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393500	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000393494	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393494	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393494	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393494	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393494	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393494	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000403559	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000403559	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000403559	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000403559	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000403559	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000403559	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000408937	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000408937	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000408937	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000408937	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000408937	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000408937	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000350908	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000350908	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000350908	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000350908	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000350908	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000350908	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000393498	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393498	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393498	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393498	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393498	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393498	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000393489	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393489	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393489	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393489	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393489	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393489	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000393491	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393491	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393491	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393491	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393491	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000393491	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000459666	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000459666	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000459666	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000459666	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000459666	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000459666	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000378237	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000378237	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000378237	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000378237	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000378237	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000378237	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000360232	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000360232	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000360232	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000360232	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000360232	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000360232	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000390668	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000390668	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000390668	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000390668	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000390668	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000390668	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-3CDS	ENST00000462331	ENST00000579649		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000462331	ENST00000582380		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000462331	ENST00000577222		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000462331	ENST00000347512		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000462331	ENST00000579446		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000462331	ENST00000394580		ChiTaRS3.1			EC575727	FOXP2	chr7	113937246	-	RPL36	chr19	5691358	+
intron-intron	ENST00000417257	ENST00000417257		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000417257	ENST00000402883		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000417257	ENST00000484674		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000402883	ENST00000417257		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000402883	ENST00000402883		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000402883	ENST00000484674		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000484674	ENST00000417257		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000484674	ENST00000402883		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
intron-intron	ENST00000484674	ENST00000484674		ChiTaRS3.1			BU584954	FRMD5	chr15	44280555	-	FRMD5	chr16	5586255	-
3UTR-3UTR	ENST00000602240	ENST00000602240		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000602240	ENST00000204005		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000602240	ENST00000545697		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000602240	ENST00000308370		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000602240	ENST00000396819		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000602240	ENST00000243562		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000204005	ENST00000602240		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000204005	ENST00000204005		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000204005	ENST00000545697		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000204005	ENST00000308370		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000204005	ENST00000396819		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000204005	ENST00000243562		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000545697	ENST00000602240		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000545697	ENST00000204005		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000545697	ENST00000545697		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000545697	ENST00000308370		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000545697	ENST00000396819		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000545697	ENST00000243562		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000308370	ENST00000602240		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000308370	ENST00000204005		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000308370	ENST00000545697		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000308370	ENST00000308370		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000308370	ENST00000396819		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000308370	ENST00000243562		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000396819	ENST00000602240		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000396819	ENST00000204005		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000396819	ENST00000545697		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000396819	ENST00000308370		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000396819	ENST00000396819		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
5CDS-3UTR	ENST00000396819	ENST00000243562		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000243562	ENST00000602240		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000243562	ENST00000204005		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000243562	ENST00000545697		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000243562	ENST00000308370		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000243562	ENST00000396819		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
3UTR-3UTR	ENST00000243562	ENST00000243562		ChiTaRS3.1			AA580244	LTBP4	chr19	41129881	+	LTBP4	chr19	41128886	-
intron-3CDS	ENST00000392701	ENST00000263094		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-3CDS	ENST00000392701	ENST00000433129		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-3CDS	ENST00000392701	ENST00000435683		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-intron	ENST00000392701	ENST00000533574		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-3CDS	ENST00000409882	ENST00000263094		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-3CDS	ENST00000409882	ENST00000433129		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-3CDS	ENST00000409882	ENST00000435683		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-intron	ENST00000409882	ENST00000533574		ChiTaRS3.1			BF902896	GALNT3	chr2	166611225	-	ABCA7	chr19	1056082	+
intron-5UTR	ENST00000366760	ENST00000366760		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000366760	ENST00000315781		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000366760	ENST00000366759		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-intron	ENST00000366760	ENST00000480897		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000315781	ENST00000366760		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000315781	ENST00000315781		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000315781	ENST00000366759		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-intron	ENST00000315781	ENST00000480897		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000366759	ENST00000366760		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000366759	ENST00000315781		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000366759	ENST00000366759		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-intron	ENST00000366759	ENST00000480897		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000480897	ENST00000366760		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000480897	ENST00000315781		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000480897	ENST00000366759		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-intron	ENST00000480897	ENST00000480897		ChiTaRS3.1			BF509540	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-3UTR	ENST00000260327	ENST00000219302		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-intron	ENST00000260327	ENST00000563498		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-3UTR	ENST00000396780	ENST00000219302		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-intron	ENST00000396780	ENST00000563498		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-3UTR	ENST00000558966	ENST00000219302		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-intron	ENST00000558966	ENST00000563498		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-3UTR	ENST00000558373	ENST00000219302		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-intron	ENST00000558373	ENST00000563498		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-3UTR	ENST00000561189	ENST00000219302		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-intron	ENST00000561189	ENST00000563498		ChiTaRS3.1			AA688018	CTDSPL2	chr15	44738895	-	NME3	chr16	1820321	+
intron-3CDS	ENST00000404826	ENST00000262519		ChiTaRS3.1			AW898510	SDK1	chr7	4194780	-	SETD1A	chr16	30975526	+
intron-3CDS	ENST00000389531	ENST00000262519		ChiTaRS3.1			AW898510	SDK1	chr7	4194780	-	SETD1A	chr16	30975526	+
intron-3CDS	ENST00000466611	ENST00000262519		ChiTaRS3.1			AW898510	SDK1	chr7	4194780	-	SETD1A	chr16	30975526	+
intron-3CDS	ENST00000318911	ENST00000509305		ChiTaRS3.1			BI006405	CYC1	chr8	145151165	-	C1QB	chr1	22987434	+
intron-3CDS	ENST00000318911	ENST00000314933		ChiTaRS3.1			BI006405	CYC1	chr8	145151165	-	C1QB	chr1	22987434	+
5UTR-3CDS	ENST00000400921	ENST00000342711		ChiTaRS3.1			BF994269	PRKCZ	chr1	2075750	+	CDC42BPG	chr11	64606275	+
5UTR-intron	ENST00000400921	ENST00000491280		ChiTaRS3.1			BF994269	PRKCZ	chr1	2075750	+	CDC42BPG	chr11	64606275	+
5UTR-3CDS	ENST00000400920	ENST00000342711		ChiTaRS3.1			BF994269	PRKCZ	chr1	2075750	+	CDC42BPG	chr11	64606275	+
5UTR-intron	ENST00000400920	ENST00000491280		ChiTaRS3.1			BF994269	PRKCZ	chr1	2075750	+	CDC42BPG	chr11	64606275	+
intron-3CDS	ENST00000479263	ENST00000342711		ChiTaRS3.1			BF994269	PRKCZ	chr1	2075750	+	CDC42BPG	chr11	64606275	+
intron-intron	ENST00000479263	ENST00000491280		ChiTaRS3.1			BF994269	PRKCZ	chr1	2075750	+	CDC42BPG	chr11	64606275	+
3UTR-3UTR	ENST00000333942	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000333942	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000333942	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000333942	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000333942	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000333942	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000333942	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000333942	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000358365	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000358365	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000358365	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000358365	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000358365	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000358365	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000358365	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000358365	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000583994	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000583994	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000583994	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000583994	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000583994	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000583994	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000583994	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000583994	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000545287	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000545287	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000545287	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000545287	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000545287	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000545287	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000545287	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000545287	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000354266	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000354266	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000354266	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000354266	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000354266	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000354266	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000354266	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000354266	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000394692	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000394692	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000394692	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000394692	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000394692	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-3UTR	ENST00000394692	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000394692	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
3UTR-intron	ENST00000394692	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000581094	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000581094	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000581094	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000581094	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000581094	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000581094	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000581094	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000581094	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000580976	ENST00000333942		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000580976	ENST00000358365		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000580976	ENST00000583994		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000580976	ENST00000545287		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000580976	ENST00000354266		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-3UTR	ENST00000580976	ENST00000394692		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000580976	ENST00000581094		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000580976	ENST00000580976		ChiTaRS3.1			CB242812	RHOT1	chr17	30552364	-	RHOT1	chr17	30552295	+
intron-intron	ENST00000264956	ENST00000324989		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000264956	ENST00000397890		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000264956	ENST00000511535		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000264956	ENST00000512574		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
3UTR-intron	ENST00000382674	ENST00000324989		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
3UTR-intron	ENST00000382674	ENST00000397890		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
3UTR-intron	ENST00000382674	ENST00000511535		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
3UTR-intron	ENST00000382674	ENST00000512574		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000509451	ENST00000324989		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000509451	ENST00000397890		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000509451	ENST00000511535		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000509451	ENST00000512574		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000515113	ENST00000324989		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000515113	ENST00000397890		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000515113	ENST00000511535		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
intron-intron	ENST00000515113	ENST00000512574		ChiTaRS3.1			DA491731	EVC	chr4	5830323	-	CRMP1	chr4	5889985	-
In-frame	ENST00000395925	ENST00000395925		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
5CDS-5UTR	ENST00000395925	ENST00000479210		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
5CDS-intron	ENST00000395925	ENST00000437480		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
5UTR-3CDS	ENST00000479210	ENST00000395925		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
5UTR-5UTR	ENST00000479210	ENST00000479210		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
5UTR-intron	ENST00000479210	ENST00000437480		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
intron-3CDS	ENST00000437480	ENST00000395925		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
intron-5UTR	ENST00000437480	ENST00000479210		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
intron-intron	ENST00000437480	ENST00000437480		ChiTaRS3.1			AA077306	GLI3	chr7	42063066	-	GLI3	chr7	42088295	-
3UTR-3UTR	ENST00000447750	ENST00000447750		ChiTaRS3.1			AW163717	GDI1	chrX	153671695	-	GDI1	chrX	153671550	+
3UTR-intron	ENST00000447750	ENST00000465640		ChiTaRS3.1			AW163717	GDI1	chrX	153671695	-	GDI1	chrX	153671550	+
intron-3UTR	ENST00000465640	ENST00000447750		ChiTaRS3.1			AW163717	GDI1	chrX	153671695	-	GDI1	chrX	153671550	+
intron-intron	ENST00000465640	ENST00000465640		ChiTaRS3.1			AW163717	GDI1	chrX	153671695	-	GDI1	chrX	153671550	+
5CDS-intron	ENST00000232125	ENST00000529631		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000232125	ENST00000529191		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-3UTR	ENST00000232125	ENST00000273550		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000232125	ENST00000526640		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000232125	ENST00000532601		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000477892	ENST00000529631		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000477892	ENST00000529191		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-3UTR	ENST00000477892	ENST00000273550		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000477892	ENST00000526640		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000477892	ENST00000532601		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000469967	ENST00000529631		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000469967	ENST00000529191		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-3UTR	ENST00000469967	ENST00000273550		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000469967	ENST00000526640		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
5CDS-intron	ENST00000469967	ENST00000532601		ChiTaRS3.1			BI491844	FAM162A	chr3	122126184	-	FTH1	chr11	61732036	+
intron-3CDS	ENST00000080059	ENST00000080059		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000080059	ENST00000354334		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000080059	ENST00000552960		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000080059	ENST00000380610		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000080059	ENST00000427332		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-intron	ENST00000080059	ENST00000488927		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000354334	ENST00000080059		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000354334	ENST00000354334		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000354334	ENST00000552960		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000354334	ENST00000380610		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000354334	ENST00000427332		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-intron	ENST00000354334	ENST00000488927		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000552960	ENST00000080059		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000552960	ENST00000354334		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000552960	ENST00000552960		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000552960	ENST00000380610		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000552960	ENST00000427332		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-intron	ENST00000552960	ENST00000488927		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000380610	ENST00000080059		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000380610	ENST00000354334		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000380610	ENST00000552960		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000380610	ENST00000380610		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000380610	ENST00000427332		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-intron	ENST00000380610	ENST00000488927		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000427332	ENST00000080059		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000427332	ENST00000354334		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000427332	ENST00000552960		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000427332	ENST00000380610		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000427332	ENST00000427332		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-intron	ENST00000427332	ENST00000488927		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000488927	ENST00000080059		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000488927	ENST00000354334		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000488927	ENST00000552960		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000488927	ENST00000380610		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000488927	ENST00000427332		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-intron	ENST00000488927	ENST00000488927		ChiTaRS3.1			AA286791	HDAC7	chr12	48185681	-	HDAC7	chr12	48191977	-
intron-3CDS	ENST00000394936	ENST00000348956		ChiTaRS3.1			AW176753	PSAP	chr10	73577047	-	CKB	chr14	103986228	+
intron-3CDS	ENST00000394934	ENST00000348956		ChiTaRS3.1			AW176753	PSAP	chr10	73577047	-	CKB	chr14	103986228	+
intron-5UTR	ENST00000378746	ENST00000331825		ChiTaRS3.1			BP348036	KIF3A	chr5	132038731	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000378735	ENST00000331825		ChiTaRS3.1			BP348036	KIF3A	chr5	132038731	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000403231	ENST00000331825		ChiTaRS3.1			BP348036	KIF3A	chr5	132038731	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000487055	ENST00000331825		ChiTaRS3.1			BP348036	KIF3A	chr5	132038731	-	FTL	chr19	49468566	+
intron-intron	ENST00000345617	ENST00000345617		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000345617	ENST00000543185		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000345617	ENST00000541256		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000345617	ENST00000553145		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000543185	ENST00000345617		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000543185	ENST00000543185		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000543185	ENST00000541256		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000543185	ENST00000553145		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000541256	ENST00000345617		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000541256	ENST00000543185		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000541256	ENST00000541256		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000541256	ENST00000553145		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000553145	ENST00000345617		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000553145	ENST00000543185		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000553145	ENST00000541256		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000553145	ENST00000553145		ChiTaRS3.1			BF898228	HDAC4	chr2	240215159	+	HDAC4	chr2	240215023	-
intron-intron	ENST00000358077	ENST00000358077		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000358077	ENST00000472284		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000358077	ENST00000469640		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000358077	ENST00000408954		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000358077	ENST00000491893		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000358077	ENST00000466188		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000472284	ENST00000358077		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000472284	ENST00000472284		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000472284	ENST00000469640		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000472284	ENST00000408954		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000472284	ENST00000491893		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000472284	ENST00000466188		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000469640	ENST00000358077		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000469640	ENST00000472284		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000469640	ENST00000469640		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000469640	ENST00000408954		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000469640	ENST00000491893		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000469640	ENST00000466188		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000408954	ENST00000358077		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000408954	ENST00000472284		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000408954	ENST00000469640		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000408954	ENST00000408954		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000408954	ENST00000491893		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000408954	ENST00000466188		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000491893	ENST00000358077		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000491893	ENST00000472284		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000491893	ENST00000469640		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000491893	ENST00000408954		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000491893	ENST00000491893		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000491893	ENST00000466188		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000466188	ENST00000358077		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000466188	ENST00000472284		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000466188	ENST00000469640		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000466188	ENST00000408954		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000466188	ENST00000491893		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000466188	ENST00000466188		ChiTaRS3.1			BF368862	DAPK1	chr9	90140117	-	DAPK1	chr9	90139967	+
intron-intron	ENST00000377777	ENST00000377777		ChiTaRS3.1			BU685333	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
intron-3UTR	ENST00000377777	ENST00000289316		ChiTaRS3.1			BU685333	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
3UTR-intron	ENST00000289316	ENST00000377777		ChiTaRS3.1			BU685333	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
3UTR-3UTR	ENST00000289316	ENST00000289316		ChiTaRS3.1			BU685333	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
5UTR-3UTR	ENST00000302351	ENST00000313949		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000302351	ENST00000371098		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000302351	ENST00000371075		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000302351	ENST00000371100		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000371099		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000371102		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000302351	ENST00000464624		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000306120		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000371095		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000371085		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000354359		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000265620		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000306090		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000302351	ENST00000371081		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000510316	ENST00000313949		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000510316	ENST00000371098		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000510316	ENST00000371075		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000510316	ENST00000371100		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000371099		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000371102		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000510316	ENST00000464624		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000306120		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000371095		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000371085		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000354359		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000265620		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000306090		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000510316	ENST00000371081		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000509284	ENST00000313949		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000509284	ENST00000371098		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000509284	ENST00000371075		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000509284	ENST00000371100		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000371099		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000371102		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-3UTR	ENST00000509284	ENST00000464624		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000306120		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000371095		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000371085		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000354359		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000265620		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000306090		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
intron-intron	ENST00000509284	ENST00000371081		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000537006	ENST00000313949		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000537006	ENST00000371098		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000537006	ENST00000371075		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000537006	ENST00000371100		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000371099		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000371102		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-3UTR	ENST00000537006	ENST00000464624		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000306120		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000371095		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000371085		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000354359		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000265620		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000306090		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5UTR-intron	ENST00000537006	ENST00000371081		ChiTaRS3.1			CB111624	ENC1	chr5	73936130	-	GNAS	chr20	57470667	+
5CDS-intron	ENST00000584667	ENST00000584667		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000355423		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000579864		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000584667		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000355423		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000579864		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000584667		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000355423		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000579864		ChiTaRS3.1			BE175380	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-3UTR	ENST00000270142	ENST00000264888		ChiTaRS3.1			AW389351	SOD1	chr21	33040852	+	CXCL9	chr4	76924037	+
5CDS-3UTR	ENST00000389995	ENST00000264888		ChiTaRS3.1			AW389351	SOD1	chr21	33040852	+	CXCL9	chr4	76924037	+
3UTR-3UTR	ENST00000470944	ENST00000264888		ChiTaRS3.1			AW389351	SOD1	chr21	33040852	+	CXCL9	chr4	76924037	+
intron-intron	ENST00000394121	ENST00000394121		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000264637		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000584985		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000450525		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000394121	ENST00000546243		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000264637	ENST00000394121		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000264637		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000584985		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000450525		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000264637	ENST00000546243		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000584985	ENST00000394121		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000264637		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000584985		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000450525		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000584985	ENST00000546243		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-intron	ENST00000450525	ENST00000394121		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000264637		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000584985		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000450525		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-intron	ENST00000450525	ENST00000546243		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000546243	ENST00000394121		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000264637		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000584985		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000450525		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000546243	ENST00000546243		ChiTaRS3.1			AW410853	THRA	chr17	38247665	+	THRA	chr17	38219260	+
5CDS-5UTR	ENST00000344749	ENST00000396795		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000344749	ENST00000319770		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000344749	ENST00000396801		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000344749	ENST00000361959		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000344749	ENST00000355772		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000344749	ENST00000396799		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000262965	ENST00000396795		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000262965	ENST00000319770		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000262965	ENST00000396801		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000262965	ENST00000361959		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000262965	ENST00000355772		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000262965	ENST00000396799		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000453954	ENST00000396795		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000453954	ENST00000319770		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000453954	ENST00000396801		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000453954	ENST00000361959		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000453954	ENST00000355772		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000453954	ENST00000396799		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000395423	ENST00000396795		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000395423	ENST00000319770		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000395423	ENST00000396801		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000395423	ENST00000361959		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000395423	ENST00000355772		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000395423	ENST00000396799		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000588136	ENST00000396795		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000588136	ENST00000319770		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000588136	ENST00000396801		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000588136	ENST00000361959		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000588136	ENST00000355772		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
5CDS-5UTR	ENST00000588136	ENST00000396799		ChiTaRS3.1			EU155119	TCF3	chr19	1621834	-	ZNF384	chr12	6788692	-
intron-3UTR	ENST00000296503	ENST00000466801		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000296503	ENST00000409321		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000296503	ENST00000409115		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000296503	ENST00000341369		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000296503	ENST00000409683		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000296503	ENST00000410064		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000438704	ENST00000466801		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000438704	ENST00000409321		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000438704	ENST00000409115		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000438704	ENST00000341369		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000438704	ENST00000409683		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000438704	ENST00000410064		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000446922	ENST00000466801		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000446922	ENST00000409321		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000446922	ENST00000409115		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000446922	ENST00000341369		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000446922	ENST00000409683		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000446922	ENST00000410064		ChiTaRS3.1			BM836871	HMGB2	chr4	174254250	-	PTMA	chr2	232576643	+
intron-3UTR	ENST00000328631	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000328631	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000340879	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000340879	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000432678	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000432678	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000431721	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000431721	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000449610	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000449610	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000413298	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000413298	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000450045	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000450045	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000446860	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000446860	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000417896	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000417896	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000443964	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000443964	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000436134	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000436134	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3UTR	ENST00000453202	ENST00000328631		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000340879		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000432678		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000431721		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000449610		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000413298		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000450045		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000446860		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000417896		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000443964		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000436134		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-intron	ENST00000453202	ENST00000453202		ChiTaRS3.1			BF061229	IP6K2	chr3	48725546	-	IP6K2	chr3	48725653	+
intron-3CDS	ENST00000262544	ENST00000262544		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000262544	ENST00000336714		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000262544	ENST00000377475		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000262544	ENST00000377465		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-intron	ENST00000262544	ENST00000494645		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000336714	ENST00000262544		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000336714	ENST00000336714		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000336714	ENST00000377475		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000336714	ENST00000377465		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-intron	ENST00000336714	ENST00000494645		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377475	ENST00000262544		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377475	ENST00000336714		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377475	ENST00000377475		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377475	ENST00000377465		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-intron	ENST00000377475	ENST00000494645		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377465	ENST00000262544		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377465	ENST00000336714		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377465	ENST00000377475		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000377465	ENST00000377465		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-intron	ENST00000377465	ENST00000494645		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000494645	ENST00000262544		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000494645	ENST00000336714		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000494645	ENST00000377475		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-3CDS	ENST00000494645	ENST00000377465		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-intron	ENST00000494645	ENST00000494645		ChiTaRS3.1			AW361690	SEC23B	chr20	18506428	-	SEC23B	chr20	18523009	-
intron-intron	ENST00000435803	ENST00000498829		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000435803	ENST00000400023		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000435803	ENST00000405854		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000435803	ENST00000444628		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000544596	ENST00000498829		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000544596	ENST00000400023		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000544596	ENST00000405854		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-intron	ENST00000544596	ENST00000444628		ChiTaRS3.1			BF899276	ABCA13	chr7	48326933	-	C22orf34	chr22	50035231	+
intron-5UTR	ENST00000295208	ENST00000295208		ChiTaRS3.1			AW898939	ZNF514	chr2	95818470	-	ZNF514	chr2	95823153	+
intron-5UTR	ENST00000295208	ENST00000411425		ChiTaRS3.1			AW898939	ZNF514	chr2	95818470	-	ZNF514	chr2	95823153	+
intron-5UTR	ENST00000411425	ENST00000295208		ChiTaRS3.1			AW898939	ZNF514	chr2	95818470	-	ZNF514	chr2	95823153	+
intron-5UTR	ENST00000411425	ENST00000411425		ChiTaRS3.1			AW898939	ZNF514	chr2	95818470	-	ZNF514	chr2	95823153	+
intron-3CDS	ENST00000311713	ENST00000328599		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000311713	ENST00000521443		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3CDS	ENST00000278856	ENST00000328599		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000278856	ENST00000521443		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3CDS	ENST00000529106	ENST00000328599		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000529106	ENST00000521443		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3CDS	ENST00000525239	ENST00000328599		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000525239	ENST00000521443		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3CDS	ENST00000525752	ENST00000328599		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000525752	ENST00000521443		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3CDS	ENST00000540620	ENST00000328599		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000540620	ENST00000521443		ChiTaRS3.1			DA345557	WDR74	chr11	62609097	-	TRMT12	chr8	125463301	+
intron-3UTR	ENST00000254636	ENST00000261769		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000254636	ENST00000422392		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000254636	ENST00000562836		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-3UTR	ENST00000449247	ENST00000261769		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000449247	ENST00000422392		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000449247	ENST00000562836		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-3UTR	ENST00000410111	ENST00000261769		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000410111	ENST00000422392		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000410111	ENST00000562836		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-3UTR	ENST00000442664	ENST00000261769		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000442664	ENST00000422392		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000442664	ENST00000562836		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-3UTR	ENST00000409051	ENST00000261769		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000409051	ENST00000422392		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000409051	ENST00000562836		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-3UTR	ENST00000490238	ENST00000261769		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000490238	ENST00000422392		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-intron	ENST00000490238	ENST00000562836		ChiTaRS3.1			BE075539	IMMT	chr2	86371797	-	CDH1	chr16	68868897	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BQ371297	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
Frame-shit	ENST00000406961	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000406961	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-3CDS	ENST00000469850	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
intron-intron	ENST00000469850	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
Frame-shit	ENST00000405141	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000405141	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
Frame-shit	ENST00000407230	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000407230	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
Frame-shit	ENST00000538539	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000538539	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
Frame-shit	ENST00000288599	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000288599	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
Frame-shit	ENST00000348332	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000348332	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
Frame-shit	ENST00000395856	ENST00000406961		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000469850		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000405141		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000407230		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000538539		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000288599		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000348332		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
5CDS-intron	ENST00000395856	ENST00000395856		ChiTaRS3.1			AW204594	NCOA1	chr2	24930506	-	NCOA1	chr2	24930307	+
In-frame	ENST00000479054	ENST00000479054		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
In-frame	ENST00000479054	ENST00000345716		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
5CDS-intron	ENST00000479054	ENST00000488380		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
5CDS-intron	ENST00000479054	ENST00000420808		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
5CDS-intron	ENST00000479054	ENST00000464280		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
In-frame	ENST00000345716	ENST00000479054		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
In-frame	ENST00000345716	ENST00000345716		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
5CDS-intron	ENST00000345716	ENST00000488380		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
5CDS-intron	ENST00000345716	ENST00000420808		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
5CDS-intron	ENST00000345716	ENST00000464280		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-3CDS	ENST00000488380	ENST00000479054		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-3CDS	ENST00000488380	ENST00000345716		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000488380	ENST00000488380		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000488380	ENST00000420808		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000488380	ENST00000464280		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-3CDS	ENST00000420808	ENST00000479054		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-3CDS	ENST00000420808	ENST00000345716		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000420808	ENST00000488380		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000420808	ENST00000420808		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000420808	ENST00000464280		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-3CDS	ENST00000464280	ENST00000479054		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-3CDS	ENST00000464280	ENST00000345716		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000464280	ENST00000488380		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000464280	ENST00000420808		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
intron-intron	ENST00000464280	ENST00000464280		ChiTaRS3.1			BE043073	NISCH	chr3	52521905	-	NISCH	chr3	52522000	+
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			DQ898314	BCR	chr22	23631808	+	ABL1	chr9	133738148	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			DQ898314	BCR	chr22	23631808	+	ABL1	chr9	133738148	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			DQ898314	BCR	chr22	23631808	+	ABL1	chr9	133738148	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			DQ898314	BCR	chr22	23631808	+	ABL1	chr9	133738148	+
Frame-shit	ENST00000556508	ENST00000556508		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000556508	ENST00000453495		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000556508	ENST00000414716		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000556508	ENST00000418279		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000453495	ENST00000556508		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000453495	ENST00000453495		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000453495	ENST00000414716		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000453495	ENST00000418279		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000414716	ENST00000556508		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000414716	ENST00000453495		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000414716	ENST00000414716		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000414716	ENST00000418279		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000418279	ENST00000556508		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000418279	ENST00000453495		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000418279	ENST00000414716		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
Frame-shit	ENST00000418279	ENST00000418279		ChiTaRS3.1			AI904276	CEP170B	chr14	105344808	-	CEP170B	chr14	105352773	-
intron-3UTR	ENST00000398514	ENST00000519937		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000398514	ENST00000342375		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000398514	ENST00000393822		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-intron	ENST00000398514	ENST00000409383		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000343218	ENST00000519937		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000343218	ENST00000342375		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000343218	ENST00000393822		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-intron	ENST00000343218	ENST00000409383		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000534907	ENST00000519937		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000534907	ENST00000342375		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000534907	ENST00000393822		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-intron	ENST00000534907	ENST00000409383		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000504965	ENST00000519937		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000504965	ENST00000342375		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-3UTR	ENST00000504965	ENST00000393822		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
intron-intron	ENST00000504965	ENST00000409383		ChiTaRS3.1			BF877189	DPYSL3	chr5	146831387	+	SFTPB	chr2	85886159	-
5CDS-intron	ENST00000262325	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000262325	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000262325	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000262325	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000592545	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000592545	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000592545	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000592545	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000538556	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000538556	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000538556	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000538556	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000312678	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000312678	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000312678	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000312678	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000589344	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000589344	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000589344	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000589344	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000537622	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000537622	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000537622	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
5CDS-intron	ENST00000537622	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
3UTR-intron	ENST00000545922	ENST00000553400		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
3UTR-intron	ENST00000545922	ENST00000330836		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
3UTR-intron	ENST00000545922	ENST00000544005		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
3UTR-intron	ENST00000545922	ENST00000555054		ChiTaRS3.1			AW380805	AP2B1	chr17	33984668	+	DDX24	chr14	94526594	+
In-frame	ENST00000245441	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
5CDS-intron	ENST00000245441	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
3UTR-3CDS	ENST00000389868	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
3UTR-intron	ENST00000389868	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
In-frame	ENST00000530997	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
5CDS-intron	ENST00000530997	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-3CDS	ENST00000382043	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-intron	ENST00000382043	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-3CDS	ENST00000382041	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-intron	ENST00000382041	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-3CDS	ENST00000324330	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-intron	ENST00000324330	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-3CDS	ENST00000453196	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-intron	ENST00000453196	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-3CDS	ENST00000486200	ENST00000261799		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
intron-intron	ENST00000486200	ENST00000523456		ChiTaRS3.1			AY764156	NIN	chr14	51192671	-	PDGFRB	chr5	149505140	-
3UTR-intron	ENST00000388825	ENST00000361439		ChiTaRS3.1			CV421185	GPX3	chr5	150408223	-	NSMCE1	chr16	27238540	-
3UTR-intron	ENST00000388825	ENST00000565384		ChiTaRS3.1			CV421185	GPX3	chr5	150408223	-	NSMCE1	chr16	27238540	-
intron-intron	ENST00000521722	ENST00000361439		ChiTaRS3.1			CV421185	GPX3	chr5	150408223	-	NSMCE1	chr16	27238540	-
intron-intron	ENST00000521722	ENST00000565384		ChiTaRS3.1			CV421185	GPX3	chr5	150408223	-	NSMCE1	chr16	27238540	-
intron-intron	ENST00000517973	ENST00000361439		ChiTaRS3.1			CV421185	GPX3	chr5	150408223	-	NSMCE1	chr16	27238540	-
intron-intron	ENST00000517973	ENST00000565384		ChiTaRS3.1			CV421185	GPX3	chr5	150408223	-	NSMCE1	chr16	27238540	-
intron-3CDS	ENST00000434640	ENST00000434640		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380368		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380375		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380379		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000434640	ENST00000464040		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000434640		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380368		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380375		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380379		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380368	ENST00000464040		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000434640		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380368		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380375		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380379		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380375	ENST00000464040		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000434640		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380368		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380375		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380379		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380379	ENST00000464040		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000434640		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380368		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380375		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380379		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000464040	ENST00000464040		ChiTaRS3.1			AI222926	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
3UTR-intron	ENST00000434748	ENST00000262493		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
3UTR-intron	ENST00000434748	ENST00000262494		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
3UTR-intron	ENST00000434748	ENST00000569295		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
intron-intron	ENST00000261673	ENST00000262493		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
intron-intron	ENST00000261673	ENST00000262494		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
intron-intron	ENST00000261673	ENST00000569295		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
intron-intron	ENST00000542061	ENST00000262493		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
intron-intron	ENST00000542061	ENST00000262494		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
intron-intron	ENST00000542061	ENST00000569295		ChiTaRS3.1			DB344809	FBRSL1	chr12	133160815	-	GNAO1	chr16	56377743	-
5UTR-5UTR	ENST00000448150	ENST00000448150		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-5UTR	ENST00000448150	ENST00000367649		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000448150	ENST00000465723		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000448150	ENST00000462775		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-5UTR	ENST00000367649	ENST00000448150		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-5UTR	ENST00000367649	ENST00000367649		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000367649	ENST00000465723		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000367649	ENST00000462775		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000465723	ENST00000448150		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000465723	ENST00000367649		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000465723	ENST00000465723		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000465723	ENST00000462775		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000462775	ENST00000448150		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000462775	ENST00000367649		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000462775	ENST00000465723		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000462775	ENST00000462775		ChiTaRS3.1			CR747834	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-3CDS	ENST00000425528	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000425528	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000425528	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000425528	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000425528	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000425528	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000425528	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000441499	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000441499	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000441499	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000441499	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000441499	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000441499	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000441499	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000356861	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000356861	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000356861	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000356861	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000356861	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000356861	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000356861	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000450764	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000450764	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000450764	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000450764	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000450764	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000450764	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000450764	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000592287	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000592287	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000592287	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000592287	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000592287	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000592287	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000592287	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000588216	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000588216	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000588216	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000588216	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000588216	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000588216	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000588216	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000589956	ENST00000425528		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000589956	ENST00000441499		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000589956	ENST00000356861		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000589956	ENST00000450764		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000589956	ENST00000592287		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000589956	ENST00000588216		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-intron	ENST00000589956	ENST00000589956		ChiTaRS3.1			CF138505	TNPO2	chr19	12816350	+	TNPO2	chr19	12817507	-
intron-3CDS	ENST00000409699	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000409699	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000409699	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000409699	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000409699	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000409699	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000409699	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3CDS	ENST00000360698	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000360698	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000360698	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000360698	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000360698	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000360698	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000360698	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3CDS	ENST00000422354	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000422354	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000422354	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000422354	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000422354	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000422354	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000422354	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3CDS	ENST00000395625	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395625	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395625	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395625	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395625	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000395625	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000395625	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3CDS	ENST00000288745	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000288745	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000288745	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000288745	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000288745	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000288745	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000288745	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3CDS	ENST00000478721	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000478721	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000478721	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000478721	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000478721	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000478721	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000478721	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3CDS	ENST00000395614	ENST00000409699		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395614	ENST00000360698		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395614	ENST00000422354		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395614	ENST00000395625		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-3UTR	ENST00000395614	ENST00000288745		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000395614	ENST00000478721		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-5UTR	ENST00000395614	ENST00000395614		ChiTaRS3.1			BF528338	MEGF11	chr15	66207852	+	MEGF11	chr15	66206228	-
intron-intron	ENST00000536122	ENST00000360416		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000536122	ENST00000379980		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000536122	ENST00000396239		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000536122	ENST00000269243		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000360416		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000379980		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000396239		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000269243		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000360416		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000379980		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000396239		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000269243		ChiTaRS3.1			CV360528	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000316403	ENST00000409206		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000316403	ENST00000409594		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000316403	ENST00000289528		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000316403	ENST00000409412		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000316403	ENST00000409097		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000316403	ENST00000409336		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000316403	ENST00000409217		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000316403	ENST00000468301		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000316403	ENST00000409319		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000316403	ENST00000444522		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000546343	ENST00000409206		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000546343	ENST00000409594		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000546343	ENST00000289528		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000546343	ENST00000409412		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000546343	ENST00000409097		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000546343	ENST00000409336		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000546343	ENST00000409217		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000546343	ENST00000468301		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000546343	ENST00000409319		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000546343	ENST00000444522		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000560366	ENST00000409206		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000560366	ENST00000409594		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000560366	ENST00000289528		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000560366	ENST00000409412		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000560366	ENST00000409097		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000560366	ENST00000409336		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000560366	ENST00000409217		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000560366	ENST00000468301		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000560366	ENST00000409319		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000560366	ENST00000444522		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000405140	ENST00000409206		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000405140	ENST00000409594		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000405140	ENST00000289528		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000405140	ENST00000409412		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000405140	ENST00000409097		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000405140	ENST00000409336		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000405140	ENST00000409217		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000405140	ENST00000468301		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000405140	ENST00000409319		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000405140	ENST00000444522		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000523500	ENST00000409206		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000523500	ENST00000409594		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000523500	ENST00000289528		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000523500	ENST00000409412		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000523500	ENST00000409097		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-3UTR	ENST00000523500	ENST00000409336		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000523500	ENST00000409217		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000523500	ENST00000468301		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000523500	ENST00000409319		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000523500	ENST00000444522		ChiTaRS3.1			BQ345093	CLU	chr8	27462645	-	ZFAND2B	chr2	220074128	-
intron-intron	ENST00000472232	ENST00000398571		ChiTaRS3.1			AI471677	BAG1	chr9	33255092	+	USP34	chr2	61694016	+
intron-intron	ENST00000472232	ENST00000472689		ChiTaRS3.1			AI471677	BAG1	chr9	33255092	+	USP34	chr2	61694016	+
intron-intron	ENST00000467389	ENST00000398571		ChiTaRS3.1			AI471677	BAG1	chr9	33255092	+	USP34	chr2	61694016	+
intron-intron	ENST00000467389	ENST00000472689		ChiTaRS3.1			AI471677	BAG1	chr9	33255092	+	USP34	chr2	61694016	+
intron-intron	ENST00000379704	ENST00000398571		ChiTaRS3.1			AI471677	BAG1	chr9	33255092	+	USP34	chr2	61694016	+
intron-intron	ENST00000379704	ENST00000472689		ChiTaRS3.1			AI471677	BAG1	chr9	33255092	+	USP34	chr2	61694016	+
5CDS-3UTR	ENST00000539787	ENST00000447654		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000539787	ENST00000401473		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000539787	ENST00000311487		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000539787	ENST00000347617		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000539787	ENST00000395004		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000539787	ENST00000478214		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000539787	ENST00000374116		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000447654		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000401473		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000311487		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000347617		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000395004		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000478214		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000345358	ENST00000374116		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000447654		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000401473		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000311487		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000347617		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000395004		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000478214		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
3UTR-3UTR	ENST00000391871	ENST00000374116		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000447654		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000401473		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000311487		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000347617		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000395004		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000478214		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000415969	ENST00000374116		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000447654		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000401473		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000311487		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000347617		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000395004		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000478214		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000354470	ENST00000374116		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000447654		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000401473		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000311487		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000347617		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000395004		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000478214		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
5CDS-3UTR	ENST00000293288	ENST00000374116		ChiTaRS3.1			BG748407	BAX	chr19	49459467	+	HMGA1	chr6	34212770	+
intron-intron	ENST00000420083	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000420083	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000449870	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000318511	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000407004	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000589998	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000250241	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000592763	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000588657	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000590261	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000420083		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000449870		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000318511		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000407004		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000589998		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000250241		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000592763		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000588657		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000590261		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000586544	ENST00000586544		ChiTaRS3.1			BE162985	ILF3	chr19	10799605	+	ILF3	chr19	10799608	-
intron-intron	ENST00000593786	ENST00000593786		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000593786	ENST00000374796		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000593786	ENST00000359003		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000374796	ENST00000593786		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000374796	ENST00000374796		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000374796	ENST00000359003		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000359003	ENST00000593786		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000359003	ENST00000374796		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-intron	ENST00000359003	ENST00000359003		ChiTaRS3.1			BF992646	NCOA6	chr20	33329448	+	NCOA6	chr20	33328930	+
intron-3UTR	ENST00000336861	ENST00000336861		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000336861	ENST00000246635		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000336861	ENST00000587544		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000336861	ENST00000587118		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000246635	ENST00000336861		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000246635	ENST00000246635		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000246635	ENST00000587544		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000246635	ENST00000587118		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000587544	ENST00000336861		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000587544	ENST00000246635		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000587544	ENST00000587544		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000587544	ENST00000587118		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000587118	ENST00000336861		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3UTR	ENST00000587118	ENST00000246635		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000587118	ENST00000587544		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-intron	ENST00000587118	ENST00000587118		ChiTaRS3.1			AW265336	KRT13	chr17	39657421	+	KRT13	chr17	39657362	-
intron-3CDS	ENST00000496484	ENST00000355653		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
intron-3CDS	ENST00000496484	ENST00000587173		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
intron-3CDS	ENST00000496484	ENST00000420567		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000253686	ENST00000355653		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000253686	ENST00000587173		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000253686	ENST00000420567		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000449354	ENST00000355653		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000449354	ENST00000587173		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000449354	ENST00000420567		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000444840	ENST00000355653		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000444840	ENST00000587173		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
In-frame	ENST00000444840	ENST00000420567		ChiTaRS3.1			DA642154	MRPS25	chr3	15100875	-	VAT1	chr17	41170225	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			CN271708	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			CN271708	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			CN271708	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			CN271708	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-3UTR	ENST00000261991	ENST00000380334		ChiTaRS3.1			BF747964	RPS6KA5	chr14	91338578	+	CA5BP1	chrX	15721091	-
intron-3UTR	ENST00000536315	ENST00000380334		ChiTaRS3.1			BF747964	RPS6KA5	chr14	91338578	+	CA5BP1	chrX	15721091	-
intron-3UTR	ENST00000418736	ENST00000380334		ChiTaRS3.1			BF747964	RPS6KA5	chr14	91338578	+	CA5BP1	chrX	15721091	-
intron-3UTR	ENST00000556304	ENST00000380334		ChiTaRS3.1			BF747964	RPS6KA5	chr14	91338578	+	CA5BP1	chrX	15721091	-
intron-3CDS	ENST00000342016	ENST00000507166		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000342016	ENST00000358575		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000342016	ENST00000337488		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000342016	ENST00000507922		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000342016	ENST00000306932		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3UTR	ENST00000342016	ENST00000510668		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000362053	ENST00000507166		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000362053	ENST00000358575		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000362053	ENST00000337488		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000362053	ENST00000507922		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3CDS	ENST00000362053	ENST00000306932		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3UTR	ENST00000362053	ENST00000510668		ChiTaRS3.1			BF064126	CIR1	chr2	175215440	+	FIP1L1	chr4	54245408	-
intron-3UTR	ENST00000593685	ENST00000578868		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000593685	ENST00000321337		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000593685	ENST00000429205		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000323039	ENST00000578868		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000323039	ENST00000321337		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000323039	ENST00000429205		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000348817	ENST00000578868		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000348817	ENST00000321337		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000348817	ENST00000429205		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000597639	ENST00000578868		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000597639	ENST00000321337		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000597639	ENST00000429205		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000430012	ENST00000578868		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000430012	ENST00000321337		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000430012	ENST00000429205		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000601972	ENST00000578868		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000601972	ENST00000321337		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
intron-3UTR	ENST00000601972	ENST00000429205		ChiTaRS3.1			CN408345	DYRK1B	chr19	40317450	+	SENP3	chr17	7468276	+
Frame-shit	ENST00000331434	ENST00000331434		ChiTaRS3.1			AI337158	C8orf33	chr8	146278014	-	C8orf33	chr8	146279457	-
3UTR-3CDS	ENST00000272233	ENST00000546079		ChiTaRS3.1			BF855458	RHOB	chr2	20648064	-	CLPTM1	chr19	45495560	+
3UTR-3CDS	ENST00000272233	ENST00000541297		ChiTaRS3.1			BF855458	RHOB	chr2	20648064	-	CLPTM1	chr19	45495560	+
3UTR-3CDS	ENST00000272233	ENST00000337392		ChiTaRS3.1			BF855458	RHOB	chr2	20648064	-	CLPTM1	chr19	45495560	+
3UTR-intron	ENST00000272233	ENST00000589158		ChiTaRS3.1			BF855458	RHOB	chr2	20648064	-	CLPTM1	chr19	45495560	+
Frame-shit	ENST00000342056	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000342056	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000342056	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000342056	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000342056	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000342056	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000342056	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000342056	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000355194	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
In-frame	ENST00000355194	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000355194	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355194	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355194	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355194	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355194	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355194	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000370398	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000370398	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000370398	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000370398	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000370398	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000370398	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000370398	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000370398	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-3CDS	ENST00000370392	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-3CDS	ENST00000370392	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-3CDS	ENST00000370392	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-intron	ENST00000370392	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-intron	ENST00000370392	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-intron	ENST00000370392	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-intron	ENST00000370392	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-intron	ENST00000370392	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000355635	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
In-frame	ENST00000355635	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000355635	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355635	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355635	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355635	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355635	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000355635	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000414165	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
In-frame	ENST00000414165	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000414165	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000414165	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000414165	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000414165	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000414165	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000414165	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000402622	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
In-frame	ENST00000402622	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000402622	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000402622	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000402622	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000402622	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000402622	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000402622	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000403813	ENST00000342056		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
In-frame	ENST00000403813	ENST00000355194		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
Frame-shit	ENST00000403813	ENST00000370398		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000403813	ENST00000370392		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000403813	ENST00000355635		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000403813	ENST00000414165		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000403813	ENST00000402622		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
5CDS-intron	ENST00000403813	ENST00000403813		ChiTaRS3.1			CV342397	KCNQ5	chr6	73904498	-	KCNQ5	chr6	73904449	+
intron-3CDS	ENST00000453363	ENST00000417172		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000361388		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000422748		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000361675		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000361901		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000393118		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000495522		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000424922		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000453363	ENST00000543443		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-intron	ENST00000453363	ENST00000466704		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000417172		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000361388		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000422748		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000361675		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000361901		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000393118		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000495522		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000424922		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000316193	ENST00000543443		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-intron	ENST00000316193	ENST00000466704		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000417172		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000361388		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000422748		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000361675		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000361901		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000393118		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000495522		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000424922		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-3CDS	ENST00000329882	ENST00000543443		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-intron	ENST00000329882	ENST00000466704		ChiTaRS3.1			DA860690	CSH1	chr17	61973186	-	CALD1	chr7	134632455	+
intron-intron	ENST00000529615	ENST00000529615		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000529615	ENST00000328697		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000529615	ENST00000317945		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000328697	ENST00000529615		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000328697	ENST00000328697		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000328697	ENST00000317945		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000317945	ENST00000529615		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000317945	ENST00000328697		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-intron	ENST00000317945	ENST00000317945		ChiTaRS3.1			BU675737	CCDC34	chr11	27384554	+	CCDC34	chr11	27384609	-
intron-5UTR	ENST00000277459	ENST00000338761		ChiTaRS3.1			AI940309	ASB6	chr9	132400652	-	TMEM120A	chr7	75616441	-
intron-intron	ENST00000277459	ENST00000493111		ChiTaRS3.1			AI940309	ASB6	chr9	132400652	-	TMEM120A	chr7	75616441	-
intron-5UTR	ENST00000277458	ENST00000338761		ChiTaRS3.1			AI940309	ASB6	chr9	132400652	-	TMEM120A	chr7	75616441	-
intron-intron	ENST00000277458	ENST00000493111		ChiTaRS3.1			AI940309	ASB6	chr9	132400652	-	TMEM120A	chr7	75616441	-
intron-5UTR	ENST00000450050	ENST00000338761		ChiTaRS3.1			AI940309	ASB6	chr9	132400652	-	TMEM120A	chr7	75616441	-
intron-intron	ENST00000450050	ENST00000493111		ChiTaRS3.1			AI940309	ASB6	chr9	132400652	-	TMEM120A	chr7	75616441	-
intron-3CDS	ENST00000421587	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000421587	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000421587	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000421587	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000421587	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000421587	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000421587	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000421587	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000421587	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000318588	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000318588	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000318588	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000361962	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000361962	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000361962	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378163	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378163	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378163	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378158	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378158	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378158	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378166	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378166	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378166	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000442742	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000442742	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000442742	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000472704	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000472704	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000472704	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000421587		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000318588		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000361962		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000378163		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000378158		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000378166		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-3CDS	ENST00000378154	ENST00000442742		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378154	ENST00000472704		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
intron-intron	ENST00000378154	ENST00000378154		ChiTaRS3.1			BF759957	CASK	chrX	41413071	+	CASK	chrX	41394214	-
Frame-shit	ENST00000262613	ENST00000262613		ChiTaRS3.1			BE697345	SLC9A3R1	chr17	72764634	-	SLC9A3R1	chr17	72764303	+
Frame-shit	ENST00000262613	ENST00000413388		ChiTaRS3.1			BE697345	SLC9A3R1	chr17	72764634	-	SLC9A3R1	chr17	72764303	+
Frame-shit	ENST00000413388	ENST00000262613		ChiTaRS3.1			BE697345	SLC9A3R1	chr17	72764634	-	SLC9A3R1	chr17	72764303	+
Frame-shit	ENST00000413388	ENST00000413388		ChiTaRS3.1			BE697345	SLC9A3R1	chr17	72764634	-	SLC9A3R1	chr17	72764303	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835087	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000523094	ENST00000523094		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523094	ENST00000530742		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523094	ENST00000296951		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523094	ENST00000411809		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523094	ENST00000523908		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000530742	ENST00000523094		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000530742	ENST00000530742		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000530742	ENST00000296951		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000530742	ENST00000411809		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000530742	ENST00000523908		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000296951	ENST00000523094		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000296951	ENST00000530742		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000296951	ENST00000296951		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000296951	ENST00000411809		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000296951	ENST00000523908		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000411809	ENST00000523094		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000411809	ENST00000530742		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000411809	ENST00000296951		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000411809	ENST00000411809		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000411809	ENST00000523908		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523908	ENST00000523094		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523908	ENST00000530742		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523908	ENST00000296951		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523908	ENST00000411809		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
intron-intron	ENST00000523908	ENST00000523908		ChiTaRS3.1			CV350256	CLINT1	chr5	157245910	-	CLINT1	chr5	157245782	+
In-frame	ENST00000534358	ENST00000524717		ChiTaRS3.1			DQ084494	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
In-frame	ENST00000389506	ENST00000524717		ChiTaRS3.1			DQ084494	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
In-frame	ENST00000354520	ENST00000524717		ChiTaRS3.1			DQ084494	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
3UTR-3CDS	ENST00000420751	ENST00000524717		ChiTaRS3.1			DQ084494	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
5UTR-3CDS	ENST00000313543	ENST00000335870		ChiTaRS3.1			BX482775	GIMAP7	chr7	150212033	+	ZNF212	chr7	148947248	+
intron-intron	ENST00000331968	ENST00000375664		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000331968	ENST00000375646		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000331968	ENST00000347934		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000331968	ENST00000354911		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000331968	ENST00000428935		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000331968	ENST00000532233		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000415220	ENST00000375664		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000415220	ENST00000375646		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000415220	ENST00000347934		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000415220	ENST00000354911		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000415220	ENST00000428935		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000415220	ENST00000532233		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000551644	ENST00000375664		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000551644	ENST00000375646		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000551644	ENST00000347934		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000551644	ENST00000354911		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000551644	ENST00000428935		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
intron-intron	ENST00000551644	ENST00000532233		ChiTaRS3.1			AW580521	PRKD1	chr14	30216702	+	WAC	chr10	28897605	-
In-frame	ENST00000325083	ENST00000355710		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000325083	ENST00000340058		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000519253	ENST00000355710		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000519253	ENST00000340058		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000524226	ENST00000355710		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000524226	ENST00000340058		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
intron-3CDS	ENST00000518537	ENST00000355710		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
intron-3CDS	ENST00000518537	ENST00000340058		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
intron-3CDS	ENST00000518936	ENST00000355710		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
intron-3CDS	ENST00000518936	ENST00000340058		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000327578	ENST00000355710		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
In-frame	ENST00000327578	ENST00000340058		ChiTaRS3.1			AJ297349	PCM1	chr8	17851129	+	RET	chr10	43612030	+
Frame-shit	ENST00000302907	ENST00000331483		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000302907	ENST00000576390		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000302907	ENST00000439918		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-5UTR	ENST00000302907	ENST00000472244		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
Frame-shit	ENST00000391752	ENST00000331483		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000391752	ENST00000576390		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000391752	ENST00000439918		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-5UTR	ENST00000391752	ENST00000472244		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
Frame-shit	ENST00000402367	ENST00000331483		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000402367	ENST00000576390		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000402367	ENST00000439918		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-5UTR	ENST00000402367	ENST00000472244		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
Frame-shit	ENST00000391751	ENST00000331483		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000391751	ENST00000576390		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000391751	ENST00000439918		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-5UTR	ENST00000391751	ENST00000472244		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
Frame-shit	ENST00000391753	ENST00000331483		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000391753	ENST00000576390		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000391753	ENST00000439918		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-5UTR	ENST00000391753	ENST00000472244		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
Frame-shit	ENST00000441429	ENST00000331483		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000441429	ENST00000576390		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-intron	ENST00000441429	ENST00000439918		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
5CDS-5UTR	ENST00000441429	ENST00000472244		ChiTaRS3.1			AW410007	RPS9	chr19	54705054	+	P4HB	chr17	79804852	-
intron-3CDS	ENST00000306869	ENST00000306869		ChiTaRS3.1			BF761198	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-intron	ENST00000306869	ENST00000584318		ChiTaRS3.1			BF761198	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-3CDS	ENST00000584318	ENST00000306869		ChiTaRS3.1			BF761198	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-intron	ENST00000584318	ENST00000584318		ChiTaRS3.1			BF761198	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-intron	ENST00000392951	ENST00000463441		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
intron-3UTR	ENST00000392951	ENST00000323078		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
intron-3UTR	ENST00000392951	ENST00000359623		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
intron-intron	ENST00000392951	ENST00000493307		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000530649	ENST00000463441		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000530649	ENST00000323078		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000530649	ENST00000359623		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000530649	ENST00000493307		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000532870	ENST00000463441		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000532870	ENST00000323078		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000532870	ENST00000359623		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000532870	ENST00000493307		ChiTaRS3.1			AA468776	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
Frame-shit	ENST00000263253	ENST00000604900		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
Frame-shit	ENST00000263253	ENST00000412716		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
Frame-shit	ENST00000263253	ENST00000449723		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
Frame-shit	ENST00000263253	ENST00000549555		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
Frame-shit	ENST00000263253	ENST00000439799		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
Frame-shit	ENST00000263253	ENST00000425012		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
Frame-shit	ENST00000263253	ENST00000549732		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
5CDS-3UTR	ENST00000263253	ENST00000551534		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
5CDS-5UTR	ENST00000263253	ENST00000551313		ChiTaRS3.1			AW366672	EP300	chr22	41573997	+	DAZAP2	chr12	51634135	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835085	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000370250	ENST00000370250		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000370250	ENST00000517724		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000370250	ENST00000210633		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000370250	ENST00000519756		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-3CDS	ENST00000517724	ENST00000370250		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000517724	ENST00000517724		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000517724	ENST00000210633		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000517724	ENST00000519756		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-3CDS	ENST00000210633	ENST00000370250		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000210633	ENST00000517724		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000210633	ENST00000210633		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000210633	ENST00000519756		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-3CDS	ENST00000519756	ENST00000370250		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000519756	ENST00000517724		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000519756	ENST00000210633		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000519756	ENST00000519756		ChiTaRS3.1			BF897742	SEMA4G	chr10	102743049	-	SEMA4G	chr10	102743193	+
intron-intron	ENST00000526148	ENST00000264021		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000526148	ENST00000264020		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000526148	ENST00000530872		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000526148	ENST00000527868		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525681	ENST00000264021		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525681	ENST00000264020		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525681	ENST00000530872		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525681	ENST00000527868		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000339995	ENST00000264021		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000339995	ENST00000264020		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000339995	ENST00000530872		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000339995	ENST00000527868		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000396525	ENST00000264021		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000396525	ENST00000264020		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000396525	ENST00000530872		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000396525	ENST00000527868		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525995	ENST00000264021		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525995	ENST00000264020		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525995	ENST00000530872		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
intron-intron	ENST00000525995	ENST00000527868		ChiTaRS3.1			BE927811	EIF4G2	chr11	10821154	-	IFT46	chr11	118432165	+
5CDS-intron	ENST00000251808	ENST00000460934		ChiTaRS3.1			DN916458	GRHL2	chr8	102505018	+	SLC45A3	chr1	205635953	+
5CDS-intron	ENST00000251808	ENST00000367145		ChiTaRS3.1			DN916458	GRHL2	chr8	102505018	+	SLC45A3	chr1	205635953	+
5UTR-intron	ENST00000395927	ENST00000460934		ChiTaRS3.1			DN916458	GRHL2	chr8	102505018	+	SLC45A3	chr1	205635953	+
5UTR-intron	ENST00000395927	ENST00000367145		ChiTaRS3.1			DN916458	GRHL2	chr8	102505018	+	SLC45A3	chr1	205635953	+
intron-intron	ENST00000517674	ENST00000460934		ChiTaRS3.1			DN916458	GRHL2	chr8	102505018	+	SLC45A3	chr1	205635953	+
intron-intron	ENST00000517674	ENST00000367145		ChiTaRS3.1			DN916458	GRHL2	chr8	102505018	+	SLC45A3	chr1	205635953	+
intron-3CDS	ENST00000401558	ENST00000401558		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000401558	ENST00000404992		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000401558	ENST00000406957		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-intron	ENST00000401558	ENST00000481214		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000404992	ENST00000401558		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000404992	ENST00000404992		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000404992	ENST00000406957		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-intron	ENST00000404992	ENST00000481214		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000406957	ENST00000401558		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000406957	ENST00000404992		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000406957	ENST00000406957		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-intron	ENST00000406957	ENST00000481214		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000481214	ENST00000401558		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000481214	ENST00000404992		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000481214	ENST00000406957		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-intron	ENST00000481214	ENST00000481214		ChiTaRS3.1			AA559883	XPO1	chr2	61724028	-	XPO1	chr2	61722680	+
intron-3CDS	ENST00000263207	ENST00000263207		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000344269		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000406522		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000401994		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000406259		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000263207	ENST00000487793		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000263207		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000344269		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000406522		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000401994		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000406259		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000344269	ENST00000487793		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000263207		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000344269		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000406522		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000401994		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000406259		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000406522	ENST00000487793		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000263207		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000344269		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000406522		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000401994		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000406259		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000401994	ENST00000487793		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000263207		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000344269		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000406522		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000401994		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000406259		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000406259	ENST00000487793		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000263207		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000344269		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000406522		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000401994		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000406259		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000487793	ENST00000487793		ChiTaRS3.1			BF327075	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
5CDS-intron	ENST00000509793	ENST00000384994		ChiTaRS3.1			BF806633	EGF	chr4	110909761	+	NEAT1	chr11	65192917	+
5CDS-intron	ENST00000265171	ENST00000384994		ChiTaRS3.1			BF806633	EGF	chr4	110909761	+	NEAT1	chr11	65192917	+
5CDS-intron	ENST00000503392	ENST00000384994		ChiTaRS3.1			BF806633	EGF	chr4	110909761	+	NEAT1	chr11	65192917	+
intron-intron	ENST00000502723	ENST00000384994		ChiTaRS3.1			BF806633	EGF	chr4	110909761	+	NEAT1	chr11	65192917	+
5CDS-3UTR	ENST00000310118	ENST00000216271		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5CDS-intron	ENST00000310118	ENST00000448072		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5CDS-intron	ENST00000310118	ENST00000498366		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5CDS-intron	ENST00000310118	ENST00000349505		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-3UTR	ENST00000435761	ENST00000216271		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000435761	ENST00000448072		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000435761	ENST00000498366		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000435761	ENST00000349505		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-3UTR	ENST00000439383	ENST00000216271		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000439383	ENST00000448072		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000439383	ENST00000498366		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000439383	ENST00000349505		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-3UTR	ENST00000459910	ENST00000216271		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-intron	ENST00000459910	ENST00000448072		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-intron	ENST00000459910	ENST00000498366		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-intron	ENST00000459910	ENST00000349505		ChiTaRS3.1			CA336957	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
Frame-shit	ENST00000254722	ENST00000499869		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
Frame-shit	ENST00000254722	ENST00000382451		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
Frame-shit	ENST00000254722	ENST00000382452		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
5CDS-5UTR	ENST00000254722	ENST00000515743		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
5CDS-5UTR	ENST00000254722	ENST00000502702		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
intron-3CDS	ENST00000571870	ENST00000499869		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
intron-3CDS	ENST00000571870	ENST00000382451		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
intron-3CDS	ENST00000571870	ENST00000382452		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
intron-5UTR	ENST00000571870	ENST00000515743		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
intron-5UTR	ENST00000571870	ENST00000502702		ChiTaRS3.1			AA864346	SERPINF1	chr17	1679946	+	WDR1	chr4	10090365	-
intron-3UTR	ENST00000354329	ENST00000354329		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-5UTR	ENST00000354329	ENST00000529578		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000354329	ENST00000533112		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000354329	ENST00000531253		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000354329	ENST00000527372		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000529578	ENST00000354329		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-5UTR	ENST00000529578	ENST00000529578		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000529578	ENST00000533112		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000529578	ENST00000531253		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000529578	ENST00000527372		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000533112	ENST00000354329		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-5UTR	ENST00000533112	ENST00000529578		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000533112	ENST00000533112		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000533112	ENST00000531253		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000533112	ENST00000527372		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000531253	ENST00000354329		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-5UTR	ENST00000531253	ENST00000529578		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000531253	ENST00000533112		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000531253	ENST00000531253		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000531253	ENST00000527372		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000527372	ENST00000354329		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-5UTR	ENST00000527372	ENST00000529578		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000527372	ENST00000533112		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000527372	ENST00000531253		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-3UTR	ENST00000527372	ENST00000527372		ChiTaRS3.1			BE171182	MYO18A	chr17	27400729	+	MYO18A	chr17	27400679	-
intron-intron	ENST00000337523	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000337523	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000337523	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000337523	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000337523	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000375349	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000375349	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000375349	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000375349	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000375349	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000478221	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000478221	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000478221	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000478221	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000478221	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000375356	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000375356	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000375356	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000375356	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000375356	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000427690	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000427690	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000427690	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000427690	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000427690	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000426498	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000426498	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000426498	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000426498	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000426498	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000453742	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000453742	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000453742	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000453742	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000453742	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000497174	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000497174	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000497174	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000497174	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000497174	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000458308	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000458308	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000458308	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000458308	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000458308	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000432110	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000432110	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000432110	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000432110	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000432110	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000414092	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000414092	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000414092	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000414092	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000414092	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000496506	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000496506	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000496506	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000496506	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000496506	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000443250	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000443250	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000443250	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000443250	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000443250	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000439989	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000439989	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000439989	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000439989	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000439989	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000454430	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000454430	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000454430	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000454430	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000454430	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000468514	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000468514	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000468514	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000468514	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000468514	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000399936	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000399936	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000399936	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000399936	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000399936	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000399937	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000399937	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000399937	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000399937	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000399937	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000383330	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000383330	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000383330	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000383330	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000383330	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000488461	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000488461	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000488461	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000488461	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000488461	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000427627	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000427627	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000427627	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000427627	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000427627	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000446967	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000446967	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000446967	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000446967	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000446967	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000419797	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000419797	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000419797	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000419797	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000419797	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000463957	ENST00000361168		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000463957	ENST00000368361		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-5UTR	ENST00000463957	ENST00000355560		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000463957	ENST00000497188		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-intron	ENST00000463957	ENST00000536801		ChiTaRS3.1			BJ992471	DXO	chr6	3272618	-	CLK2	chr1	155243211	-
intron-3UTR	ENST00000540753	ENST00000323851		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000540753	ENST00000354944		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-5UTR	ENST00000540753	ENST00000521414		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000540753	ENST00000537882		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000540753	ENST00000414097		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000540753	ENST00000518176		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000540753	ENST00000522476		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000540753	ENST00000518066		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000323851		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000354944		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-5UTR	ENST00000223423	ENST00000521414		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000537882		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000414097		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000518176		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000522476		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000223423	ENST00000518066		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000323851		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000354944		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-5UTR	ENST00000362012	ENST00000521414		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000537882		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000414097		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000518176		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000522476		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000362012	ENST00000518066		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000323851		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000354944		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-5UTR	ENST00000373698	ENST00000521414		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000537882		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000414097		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000518176		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000522476		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
intron-3UTR	ENST00000373698	ENST00000518066		ChiTaRS3.1			AW899334	PTGS1	chr9	125140538	-	NDRG1	chr8	134251081	+
3UTR-intron	ENST00000233143	ENST00000233143		ChiTaRS3.1			AA649599	TMSB10	chr2	85133736	+	TMSB10	chr2	85133795	-
intron-3CDS	ENST00000379370	ENST00000314349		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000379370	ENST00000607714		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000379370	ENST00000599794		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000379370	ENST00000544017		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-intron	ENST00000379370	ENST00000600878		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000477585	ENST00000314349		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000477585	ENST00000607714		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000477585	ENST00000599794		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-3CDS	ENST00000477585	ENST00000544017		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
intron-intron	ENST00000477585	ENST00000600878		ChiTaRS3.1			BF763267	AGRN	chr1	978392	-	TIMM50	chr19	39980445	-
5CDS-intron	ENST00000373586	ENST00000526757		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000534127		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000313726		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000357665		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000530438		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000530991		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000526099		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000534278		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
5CDS-intron	ENST00000373586	ENST00000531237		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000526757		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000534127		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000313726		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000357665		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000530438		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000530991		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000526099		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000534278		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
3UTR-intron	ENST00000471486	ENST00000531237		ChiTaRS3.1			BG566325	EIF3I	chr1	32694172	+	ST5	chr11	8813490	-
In-frame	ENST00000415083	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000415083	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000415083	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542420	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542743	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000539849	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000269137	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000545952	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000336777		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000337502		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-5UTR	ENST00000585241	ENST00000476392		ChiTaRS3.1			AB012575	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-intron	ENST00000286657	ENST00000380121		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000504114		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000357505		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000399396		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000446957		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000267068		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000380121		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000504114		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000357505		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000399396		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000446957		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000267068		ChiTaRS3.1			BI015489	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000468306	ENST00000468306		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000370401		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000432680		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000262858		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000426613		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000468306	ENST00000455522		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000370401	ENST00000468306		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000370401		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000432680		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000262858		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000426613		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000370401	ENST00000455522		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000432680	ENST00000468306		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000370401		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000432680		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000262858		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000426613		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000432680	ENST00000455522		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000262858	ENST00000468306		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000370401		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000432680		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000262858		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000426613		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000262858	ENST00000455522		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000426613	ENST00000468306		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000370401		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000432680		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000262858		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000426613		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000426613	ENST00000455522		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000455522	ENST00000468306		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000370401		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000432680		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000262858		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000426613		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000455522	ENST00000455522		ChiTaRS3.1			AI038626	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3CDS	ENST00000403721	ENST00000403721		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000403721	ENST00000263629		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000403721	ENST00000394600		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-intron	ENST00000403721	ENST00000446660		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000263629	ENST00000403721		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000263629	ENST00000263629		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000263629	ENST00000394600		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-intron	ENST00000263629	ENST00000446660		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000394600	ENST00000403721		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000394600	ENST00000263629		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000394600	ENST00000394600		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-intron	ENST00000394600	ENST00000446660		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000446660	ENST00000403721		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000446660	ENST00000263629		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-3CDS	ENST00000446660	ENST00000394600		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-intron	ENST00000446660	ENST00000446660		ChiTaRS3.1			CA429337	MTIF2	chr2	55470799	+	MTIF2	chr2	55476551	-
intron-intron	ENST00000255039	ENST00000255039		ChiTaRS3.1			BF931070	HAPLN2	chr1	156589447	-	HAPLN2	chr1	156589705	+
intron-intron	ENST00000255039	ENST00000494218		ChiTaRS3.1			BF931070	HAPLN2	chr1	156589447	-	HAPLN2	chr1	156589705	+
intron-intron	ENST00000494218	ENST00000255039		ChiTaRS3.1			BF931070	HAPLN2	chr1	156589447	-	HAPLN2	chr1	156589705	+
intron-intron	ENST00000494218	ENST00000494218		ChiTaRS3.1			BF931070	HAPLN2	chr1	156589447	-	HAPLN2	chr1	156589705	+
intron-intron	ENST00000390548	ENST00000448637		ChiTaRS3.1			AY971122	IGHG1	chr14	107034729	-	LPP	chr3	188272697	+
intron-intron	ENST00000390548	ENST00000312675		ChiTaRS3.1			AY971122	IGHG1	chr14	107034729	-	LPP	chr3	188272697	+
intron-intron	ENST00000390548	ENST00000543006		ChiTaRS3.1			AY971122	IGHG1	chr14	107034729	-	LPP	chr3	188272697	+
intron-intron	ENST00000390548	ENST00000471917		ChiTaRS3.1			AY971122	IGHG1	chr14	107034729	-	LPP	chr3	188272697	+
Frame-shit	ENST00000367306	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000367306	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000367306	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000367306	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000367306	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000367306	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5CDS-5UTR	ENST00000367306	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000340006	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000340006	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000340006	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000340006	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000340006	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000340006	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5CDS-5UTR	ENST00000340006	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000531916	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000531916	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000531916	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000531916	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000531916	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000531916	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-5UTR	ENST00000531916	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000532460	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000532460	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000532460	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000532460	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000532460	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000532460	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5CDS-5UTR	ENST00000532460	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000533432	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000533432	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000533432	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000533432	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000533432	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
Frame-shit	ENST00000533432	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5CDS-5UTR	ENST00000533432	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000526723	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000526723	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000526723	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000526723	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000526723	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
In-frame	ENST00000526723	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5CDS-5UTR	ENST00000526723	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-3CDS	ENST00000458271	ENST00000367306		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-3CDS	ENST00000458271	ENST00000340006		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-3CDS	ENST00000458271	ENST00000531916		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-3CDS	ENST00000458271	ENST00000532460		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-3CDS	ENST00000458271	ENST00000533432		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-3CDS	ENST00000458271	ENST00000526723		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
5UTR-5UTR	ENST00000458271	ENST00000458271		ChiTaRS3.1			BF882820	CSRP1	chr1	201457986	-	CSRP1	chr1	201458086	+
intron-3CDS	ENST00000378330	ENST00000378330		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000378330	ENST00000301030		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000378330	ENST00000563291		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000378330	ENST00000567736		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000301030	ENST00000378330		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000301030	ENST00000301030		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000301030	ENST00000563291		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000301030	ENST00000567736		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000563291	ENST00000378330		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000563291	ENST00000301030		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000563291	ENST00000563291		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000563291	ENST00000567736		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000567736	ENST00000378330		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-3CDS	ENST00000567736	ENST00000301030		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000567736	ENST00000563291		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000567736	ENST00000567736		ChiTaRS3.1			CB178636	ANKRD11	chr16	89349892	+	ANKRD11	chr16	89349325	+
intron-intron	ENST00000433211	ENST00000422959		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000307305		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000424760		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000415251		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000275575		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000450574		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000416283		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000248550		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000433211	ENST00000454592		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000422959		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000307305		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000424760		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000415251		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000275575		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000450574		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000416283		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000248550		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373744	ENST00000454592		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000422959		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000307305		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000424760		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000415251		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000275575		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000450574		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000416283		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000248550		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000545309	ENST00000454592		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000422959		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000307305		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000424760		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000415251		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000275575		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000450574		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000416283		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000248550		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-intron	ENST00000373735	ENST00000454592		ChiTaRS3.1			AJ557811	CTNNA3	chr10	67836249	-	PHTF2	chr7	77491611	-
intron-3CDS	ENST00000546097	ENST00000432176		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000546097	ENST00000409923		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000546097	ENST00000498833		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000546097	ENST00000409763		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000367481	ENST00000432176		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000367481	ENST00000409923		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000367481	ENST00000498833		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000367481	ENST00000409763		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000367480	ENST00000432176		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000367480	ENST00000409923		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000367480	ENST00000498833		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000367480	ENST00000409763		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000321680	ENST00000432176		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000321680	ENST00000409923		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000321680	ENST00000498833		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000321680	ENST00000409763		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000179882	ENST00000432176		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000179882	ENST00000409923		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000179882	ENST00000498833		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000179882	ENST00000409763		ChiTaRS3.1			AA282281	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000298310	ENST00000513238		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000298310	ENST00000307428		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000382135	ENST00000513238		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000382135	ENST00000307428		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000545773	ENST00000513238		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000545773	ENST00000307428		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000556925	ENST00000513238		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000556925	ENST00000307428		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000546046	ENST00000513238		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000546046	ENST00000307428		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000556672	ENST00000513238		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3CDS	ENST00000556672	ENST00000307428		ChiTaRS3.1			BF812767	NEMF	chr14	50047125	+	PARM1	chr4	75858546	+
intron-3UTR	ENST00000404072	ENST00000301244		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000404072	ENST00000587090		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000404072	ENST00000454580		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000468288	ENST00000301244		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000468288	ENST00000587090		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000468288	ENST00000454580		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000356976	ENST00000301244		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000356976	ENST00000587090		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3UTR	ENST00000356976	ENST00000454580		ChiTaRS3.1			BE830538	PICK1	chr22	38462179	-	SPINT2	chr19	38782774	+
intron-3CDS	ENST00000374040	ENST00000374040		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000374040	ENST00000493901		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000374040	ENST00000357582		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000493901	ENST00000374040		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000493901	ENST00000493901		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000493901	ENST00000357582		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000357582	ENST00000374040		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000357582	ENST00000493901		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000357582	ENST00000357582		ChiTaRS3.1			BM835919	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
Frame-shit	ENST00000261973	ENST00000261973		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000261973	ENST00000540173		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000261973	ENST00000527432		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000261973	ENST00000525321		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000261973	ENST00000526754		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000261973	ENST00000532483		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-3CDS	ENST00000540173	ENST00000261973		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000540173	ENST00000540173		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000540173	ENST00000527432		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000540173	ENST00000525321		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000540173	ENST00000526754		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000540173	ENST00000532483		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
Frame-shit	ENST00000527432	ENST00000261973		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000527432	ENST00000540173		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000527432	ENST00000527432		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000527432	ENST00000525321		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000527432	ENST00000526754		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
5CDS-intron	ENST00000527432	ENST00000532483		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-3CDS	ENST00000525321	ENST00000261973		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000525321	ENST00000540173		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000525321	ENST00000527432		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000525321	ENST00000525321		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000525321	ENST00000526754		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000525321	ENST00000532483		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-3CDS	ENST00000526754	ENST00000261973		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000526754	ENST00000540173		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000526754	ENST00000527432		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000526754	ENST00000525321		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000526754	ENST00000526754		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-intron	ENST00000526754	ENST00000532483		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
3UTR-3CDS	ENST00000532483	ENST00000261973		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
3UTR-intron	ENST00000532483	ENST00000540173		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
3UTR-intron	ENST00000532483	ENST00000527432		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
3UTR-intron	ENST00000532483	ENST00000525321		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
3UTR-intron	ENST00000532483	ENST00000526754		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
3UTR-intron	ENST00000532483	ENST00000532483		ChiTaRS3.1			BG944817	RBM25	chr14	73576085	+	RBM25	chr14	73572611	+
intron-3UTR	ENST00000394936	ENST00000394936		ChiTaRS3.1			BG236863	PSAP	chr10	73576362	+	PSAP	chr10	73576510	-
intron-3UTR	ENST00000394936	ENST00000394934		ChiTaRS3.1			BG236863	PSAP	chr10	73576362	+	PSAP	chr10	73576510	-
intron-3UTR	ENST00000394934	ENST00000394936		ChiTaRS3.1			BG236863	PSAP	chr10	73576362	+	PSAP	chr10	73576510	-
intron-3UTR	ENST00000394934	ENST00000394934		ChiTaRS3.1			BG236863	PSAP	chr10	73576362	+	PSAP	chr10	73576510	-
intron-intron	ENST00000377795	ENST00000452313		ChiTaRS3.1			DA620171	CD74	chr5	149784647	-	NPIPB7	chr16	28506595	+
5CDS-intron	ENST00000353334	ENST00000452313		ChiTaRS3.1			DA620171	CD74	chr5	149784647	-	NPIPB7	chr16	28506595	+
intron-intron	ENST00000524315	ENST00000452313		ChiTaRS3.1			DA620171	CD74	chr5	149784647	-	NPIPB7	chr16	28506595	+
5CDS-intron	ENST00000009530	ENST00000452313		ChiTaRS3.1			DA620171	CD74	chr5	149784647	-	NPIPB7	chr16	28506595	+
Frame-shit	ENST00000216962	ENST00000333167		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
Frame-shit	ENST00000216962	ENST00000301810		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
5CDS-5UTR	ENST00000216962	ENST00000480865		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
5CDS-5UTR	ENST00000216962	ENST00000450296		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
5CDS-5UTR	ENST00000216962	ENST00000544624		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
5CDS-3UTR	ENST00000216962	ENST00000444607		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-3CDS	ENST00000471359	ENST00000333167		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-3CDS	ENST00000471359	ENST00000301810		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-5UTR	ENST00000471359	ENST00000480865		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-5UTR	ENST00000471359	ENST00000450296		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-5UTR	ENST00000471359	ENST00000544624		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-3UTR	ENST00000471359	ENST00000444607		ChiTaRS3.1			DA055429	PYGB	chr20	25255316	+	ACAA1	chr3	38168078	-
intron-3UTR	ENST00000481781	ENST00000264235		ChiTaRS3.1			CK819498	INS-IGF2	chr11	2181059	+	GSK3B	chr3	119542156	+
intron-intron	ENST00000481781	ENST00000316626		ChiTaRS3.1			CK819498	INS-IGF2	chr11	2181059	+	GSK3B	chr3	119542156	+
intron-intron	ENST00000481781	ENST00000473886		ChiTaRS3.1			CK819498	INS-IGF2	chr11	2181059	+	GSK3B	chr3	119542156	+
intron-3UTR	ENST00000397270	ENST00000264235		ChiTaRS3.1			CK819498	INS-IGF2	chr11	2181059	+	GSK3B	chr3	119542156	+
intron-intron	ENST00000397270	ENST00000316626		ChiTaRS3.1			CK819498	INS-IGF2	chr11	2181059	+	GSK3B	chr3	119542156	+
intron-intron	ENST00000397270	ENST00000473886		ChiTaRS3.1			CK819498	INS-IGF2	chr11	2181059	+	GSK3B	chr3	119542156	+
5CDS-intron	ENST00000323699	ENST00000291270		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-5UTR	ENST00000323699	ENST00000600757		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-5UTR	ENST00000323699	ENST00000343373		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000323699	ENST00000447742		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000323699	ENST00000458663		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000323699	ENST00000354227		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000323699	ENST00000595361		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000391877	ENST00000291270		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-5UTR	ENST00000391877	ENST00000600757		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-5UTR	ENST00000391877	ENST00000343373		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000391877	ENST00000447742		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000391877	ENST00000458663		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000391877	ENST00000354227		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
5CDS-intron	ENST00000391877	ENST00000595361		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-intron	ENST00000465848	ENST00000291270		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-5UTR	ENST00000465848	ENST00000600757		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-5UTR	ENST00000465848	ENST00000343373		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-intron	ENST00000465848	ENST00000447742		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-intron	ENST00000465848	ENST00000458663		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-intron	ENST00000465848	ENST00000354227		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
3UTR-intron	ENST00000465848	ENST00000595361		ChiTaRS3.1			BF944194	DEGS1	chr1	224377512	-	DMPK	chr19	46283369	+
intron-intron	ENST00000359895	ENST00000367760		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000359895	ENST00000239461		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000359895	ENST00000497230		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000359895	ENST00000476867		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000356618	ENST00000367760		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000356618	ENST00000239461		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000356618	ENST00000497230		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000356618	ENST00000476867		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355841	ENST00000367760		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355841	ENST00000239461		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355841	ENST00000497230		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355841	ENST00000476867		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000505746	ENST00000367760		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000505746	ENST00000239461		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000505746	ENST00000497230		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000505746	ENST00000476867		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000393551	ENST00000367760		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000393551	ENST00000239461		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000393551	ENST00000497230		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000393551	ENST00000476867		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355572	ENST00000367760		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355572	ENST00000239461		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355572	ENST00000497230		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000355572	ENST00000476867		ChiTaRS3.1			AW606517	PDLIM7	chr5	176917573	+	PRRX1	chr1	170638317	-
intron-intron	ENST00000470487	ENST00000249269		ChiTaRS3.1			BF229388	GOLIM4	chr3	167759219	-	PMPCB	chr7	102963005	-
intron-intron	ENST00000470487	ENST00000428154		ChiTaRS3.1			BF229388	GOLIM4	chr3	167759219	-	PMPCB	chr7	102963005	-
intron-intron	ENST00000470487	ENST00000420236		ChiTaRS3.1			BF229388	GOLIM4	chr3	167759219	-	PMPCB	chr7	102963005	-
intron-intron	ENST00000309027	ENST00000249269		ChiTaRS3.1			BF229388	GOLIM4	chr3	167759219	-	PMPCB	chr7	102963005	-
intron-intron	ENST00000309027	ENST00000428154		ChiTaRS3.1			BF229388	GOLIM4	chr3	167759219	-	PMPCB	chr7	102963005	-
intron-intron	ENST00000309027	ENST00000420236		ChiTaRS3.1			BF229388	GOLIM4	chr3	167759219	-	PMPCB	chr7	102963005	-
intron-3CDS	ENST00000539857	ENST00000539857		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
intron-3CDS	ENST00000539857	ENST00000579016		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
intron-intron	ENST00000539857	ENST00000584568		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
Frame-shit	ENST00000579016	ENST00000539857		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
Frame-shit	ENST00000579016	ENST00000579016		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
5CDS-intron	ENST00000579016	ENST00000584568		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
3UTR-3CDS	ENST00000584568	ENST00000539857		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
3UTR-3CDS	ENST00000584568	ENST00000579016		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
3UTR-intron	ENST00000584568	ENST00000584568		ChiTaRS3.1			BF365939	ENGASE	chr17	77079154	-	ENGASE	chr17	77077099	+
3UTR-3UTR	ENST00000425474	ENST00000307365		ChiTaRS3.1			BE772578	AZGP1P1	chr7	99580876	+	DDIT4	chr10	74034947	+
5UTR-3UTR	ENST00000380320	ENST00000216146		ChiTaRS3.1			CN268128	EMILIN1	chr2	27301733	+	RPL3	chr22	39708941	-
5UTR-5UTR	ENST00000380320	ENST00000465618		ChiTaRS3.1			CN268128	EMILIN1	chr2	27301733	+	RPL3	chr22	39708941	-
5UTR-3UTR	ENST00000380320	ENST00000401609		ChiTaRS3.1			CN268128	EMILIN1	chr2	27301733	+	RPL3	chr22	39708941	-
Frame-shit	ENST00000260129	ENST00000260129		ChiTaRS3.1			DA490976	TGS1	chr8	56715046	+	TGS1	chr8	56698833	+
5CDS-intron	ENST00000528416	ENST00000312397		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000528416	ENST00000528573		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000415073	ENST00000312397		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000415073	ENST00000528573		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000252268	ENST00000312397		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000252268	ENST00000528573		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
3UTR-intron	ENST00000532264	ENST00000312397		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
3UTR-intron	ENST00000532264	ENST00000528573		ChiTaRS3.1			DA701734	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
intron-5UTR	ENST00000340208	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000340208	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000340208	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000340208	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000424173	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000424173	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000424173	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000504921	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000504921	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000504921	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514028	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000514028	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000514028	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000437473	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000437473	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000437473	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000510942	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000510942	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000510942	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000506554	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000506554	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000506554	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000508569	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000508569	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000508569	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000514015	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000514015	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000514015	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000539796	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000539796	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000539796	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000340208		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000424173		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000504921		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000514028		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000437473		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000510942		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000506554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000508569		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-5UTR	ENST00000503554	ENST00000514015		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000503554	ENST00000539796		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-intron	ENST00000503554	ENST00000503554		ChiTaRS3.1			N87151	MEF2C	chr5	88027614	-	MEF2C	chr5	88119653	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BQ371298	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000374358	ENST00000582337		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000309902		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000577538		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000299687		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000584235		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000582337		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000309902		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000577538		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000299687		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000584235		ChiTaRS3.1			BE077374	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-3CDS	ENST00000371720	ENST00000376874		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
intron-intron	ENST00000371720	ENST00000340724		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
intron-intron	ENST00000371720	ENST00000544468		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
3UTR-3CDS	ENST00000371717	ENST00000376874		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
3UTR-intron	ENST00000371717	ENST00000340724		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
3UTR-intron	ENST00000371717	ENST00000544468		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
3UTR-3CDS	ENST00000399219	ENST00000376874		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
3UTR-intron	ENST00000399219	ENST00000340724		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
3UTR-intron	ENST00000399219	ENST00000544468		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
intron-3CDS	ENST00000462616	ENST00000376874		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
intron-intron	ENST00000462616	ENST00000340724		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
intron-intron	ENST00000462616	ENST00000544468		ChiTaRS3.1			BF742244	PMPCA	chr9	139317869	-	RILPL1	chr12	124008060	-
5CDS-intron	ENST00000377351	ENST00000318008		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000377351	ENST00000433206		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000377351	ENST00000435347		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000335972	ENST00000318008		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000335972	ENST00000433206		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000335972	ENST00000435347		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
intron-intron	ENST00000490869	ENST00000318008		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
intron-intron	ENST00000490869	ENST00000433206		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
intron-intron	ENST00000490869	ENST00000435347		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000377269	ENST00000318008		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000377269	ENST00000433206		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
5CDS-intron	ENST00000377269	ENST00000435347		ChiTaRS3.1			BE076043	UBA1	chrX	47069463	-	LASP1	chr17	37057026	-
intron-3CDS	ENST00000369683	ENST00000255409		ChiTaRS3.1			AW376261	XPNPEP1	chr10	111633136	-	CHI3L1	chr1	203148952	+
intron-3CDS	ENST00000369680	ENST00000255409		ChiTaRS3.1			AW376261	XPNPEP1	chr10	111633136	-	CHI3L1	chr1	203148952	+
intron-3CDS	ENST00000502935	ENST00000255409		ChiTaRS3.1			AW376261	XPNPEP1	chr10	111633136	-	CHI3L1	chr1	203148952	+
intron-3CDS	ENST00000322238	ENST00000255409		ChiTaRS3.1			AW376261	XPNPEP1	chr10	111633136	-	CHI3L1	chr1	203148952	+
intron-3CDS	ENST00000430337	ENST00000255409		ChiTaRS3.1			AW376261	XPNPEP1	chr10	111633136	-	CHI3L1	chr1	203148952	+
intron-3CDS	ENST00000367021	ENST00000367021		ChiTaRS3.1			BF769897	IRF6	chr1	209964165	-	IRF6	chr1	209963900	+
intron-3CDS	ENST00000367021	ENST00000542854		ChiTaRS3.1			BF769897	IRF6	chr1	209964165	-	IRF6	chr1	209963900	+
intron-3CDS	ENST00000542854	ENST00000367021		ChiTaRS3.1			BF769897	IRF6	chr1	209964165	-	IRF6	chr1	209963900	+
intron-3CDS	ENST00000542854	ENST00000542854		ChiTaRS3.1			BF769897	IRF6	chr1	209964165	-	IRF6	chr1	209963900	+
Frame-shit	ENST00000399151	ENST00000399151		ChiTaRS3.1			BX494106	DOPEY2	chr21	37618147	-	DOPEY2	chr21	37617797	+
5CDS-intron	ENST00000399151	ENST00000492760		ChiTaRS3.1			BX494106	DOPEY2	chr21	37618147	-	DOPEY2	chr21	37617797	+
intron-3CDS	ENST00000492760	ENST00000399151		ChiTaRS3.1			BX494106	DOPEY2	chr21	37618147	-	DOPEY2	chr21	37617797	+
intron-intron	ENST00000492760	ENST00000492760		ChiTaRS3.1			BX494106	DOPEY2	chr21	37618147	-	DOPEY2	chr21	37617797	+
In-frame	ENST00000534358	ENST00000534358		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000389506		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000354520		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000534358		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000389506		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000354520		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000534358		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000389506		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000354520		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AY187945	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3UTR	ENST00000472539	ENST00000472539		ChiTaRS3.1			AI184430	HBM	chr16	216706	-	HBM	chr16	216265	+
3UTR-3UTR	ENST00000472539	ENST00000356815		ChiTaRS3.1			AI184430	HBM	chr16	216706	-	HBM	chr16	216265	+
5CDS-3UTR	ENST00000356815	ENST00000472539		ChiTaRS3.1			AI184430	HBM	chr16	216706	-	HBM	chr16	216265	+
5CDS-3UTR	ENST00000356815	ENST00000356815		ChiTaRS3.1			AI184430	HBM	chr16	216706	-	HBM	chr16	216265	+
In-frame	ENST00000405315	ENST00000405315		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
Frame-shit	ENST00000405315	ENST00000407032		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-3UTR	ENST00000405315	ENST00000485798		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-3UTR	ENST00000405315	ENST00000263273		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
In-frame	ENST00000407032	ENST00000405315		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
Frame-shit	ENST00000407032	ENST00000407032		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-3UTR	ENST00000407032	ENST00000485798		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-3UTR	ENST00000407032	ENST00000263273		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
intron-3CDS	ENST00000485798	ENST00000405315		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
intron-3CDS	ENST00000485798	ENST00000407032		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
intron-3UTR	ENST00000485798	ENST00000485798		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
intron-3UTR	ENST00000485798	ENST00000263273		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
In-frame	ENST00000263273	ENST00000405315		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
Frame-shit	ENST00000263273	ENST00000407032		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-3UTR	ENST00000263273	ENST00000485798		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-3UTR	ENST00000263273	ENST00000263273		ChiTaRS3.1			BM983542	NUCB1	chr19	49416429	-	NUCB1	chr19	49425646	-
5CDS-intron	ENST00000445912	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000445912	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000445912	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000252034	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000252034	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000252034	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000358929	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000358929	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000358929	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000320492	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000320492	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000320492	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000414324	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000414324	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000414324	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380562	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380562	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380562	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380575	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380575	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380575	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380584	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380584	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380584	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000458204	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000458204	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000458204	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000357036	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000357036	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000357036	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000429192	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000429192	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000429192	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-intron	ENST00000380553	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-intron	ENST00000380553	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-intron	ENST00000380553	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380576	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380576	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000380576	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000320399	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000320399	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
5CDS-intron	ENST00000320399	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-intron	ENST00000466878	ENST00000539054		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-intron	ENST00000466878	ENST00000379757		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-intron	ENST00000466878	ENST00000473453		ChiTaRS3.1			DA537387	ELN	chr7	73457034	+	TXNDC5	chr6	7910891	-
intron-3CDS	ENST00000348405	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000348405	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000513858	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000513858	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000395310	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000395310	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000443462	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000443462	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000509142	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000509142	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000326950	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000326950	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000432794	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000432794	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000311785	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000311785	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000448323	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000448323	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000505472	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000505472	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000500777	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000500777	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000508502	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000508502	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000355196	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000355196	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000264405	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000264405	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000505984	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000505984	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000508479	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000508479	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000436790	ENST00000310300		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000436790	ENST00000497245		ChiTaRS3.1			BI052970	SEC31A	chr4	83765556	-	LRCH4	chr7	100174392	-
intron-3CDS	ENST00000446824	ENST00000348943		ChiTaRS3.1			CN350528	HIST1H3F	chr6	26250664	-	HNRNPM	chr19	8520307	+
intron-3CDS	ENST00000446824	ENST00000325495		ChiTaRS3.1			CN350528	HIST1H3F	chr6	26250664	-	HNRNPM	chr19	8520307	+
intron-intron	ENST00000446824	ENST00000602219		ChiTaRS3.1			CN350528	HIST1H3F	chr6	26250664	-	HNRNPM	chr19	8520307	+
intron-3CDS	ENST00000267812	ENST00000267812		ChiTaRS3.1			EB360877	MFAP1	chr15	44109566	+	MFAP1	chr15	44105248	+
intron-intron	ENST00000359337	ENST00000359337		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000359337	ENST00000449103		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000359337	ENST00000496720		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000449103	ENST00000359337		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000449103	ENST00000449103		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000449103	ENST00000496720		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000496720	ENST00000359337		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000496720	ENST00000449103		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000496720	ENST00000496720		ChiTaRS3.1			BI033029	PLXNB2	chr22	50730363	+	PLXNB2	chr22	50730429	-
intron-intron	ENST00000539605	ENST00000412585		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000539605	ENST00000425848		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000539605	ENST00000450871		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000539605	ENST00000359635		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000539605	ENST00000435618		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000539605	ENST00000421349		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000357997	ENST00000412585		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000357997	ENST00000425848		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000357997	ENST00000450871		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000357997	ENST00000359635		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000357997	ENST00000435618		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000357997	ENST00000421349		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542282	ENST00000412585		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542282	ENST00000425848		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542282	ENST00000450871		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542282	ENST00000359635		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542282	ENST00000435618		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542282	ENST00000421349		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542657	ENST00000412585		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542657	ENST00000425848		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542657	ENST00000450871		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542657	ENST00000359635		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542657	ENST00000435618		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542657	ENST00000421349		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542374	ENST00000412585		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542374	ENST00000425848		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542374	ENST00000450871		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542374	ENST00000359635		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542374	ENST00000435618		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000542374	ENST00000421349		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000337516	ENST00000412585		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000337516	ENST00000425848		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000337516	ENST00000450871		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000337516	ENST00000359635		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000337516	ENST00000435618		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-intron	ENST00000337516	ENST00000421349		ChiTaRS3.1			AW389457	ANKLE2	chr12	133313587	-	HLA-B	chr6	2656913	+
intron-3CDS	ENST00000308158	ENST00000415930		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000308158	ENST00000356487		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000308158	ENST00000586425		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000481811	ENST00000415930		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000481811	ENST00000356487		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000481811	ENST00000586425		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000476170	ENST00000415930		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000476170	ENST00000356487		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000476170	ENST00000586425		ChiTaRS3.1			AW366833	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
3UTR-3CDS	ENST00000341307	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000341307	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000341307	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000341307	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000341307	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000341307	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000341307	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000356000	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000538995	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000377819	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000339997	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3CDS	ENST00000540798	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000537981	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000394036		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000394045		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000348459		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000371332		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000239026		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000394044		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
3UTR-3CDS	ENST00000354497	ENST00000462057		ChiTaRS3.1			CN480729	RTN3	chr11	63526457	-	HELLS	chr10	96313882	+
intron-3UTR	ENST00000582520	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000582520	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000582520	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000582520	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000582520	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000582520	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000269321	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000269321	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000269321	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000269321	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000269321	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000400721	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000400721	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000400721	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000400721	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000400721	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000584461	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000584461	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000584461	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000584461	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000584461	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000541078	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000541078	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000541078	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000541078	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000541078	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000580685	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000580685	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000580685	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000580685	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000580685	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000278317		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000360603		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000381561		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000381549		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000381548		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000381579		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000381589		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-3UTR	ENST00000581876	ENST00000381558		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000581876	ENST00000397301		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000581876	ENST00000446240		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000581876	ENST00000397304		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000581876	ENST00000493234		ChiTaRS3.1			AA722860	ARHGDIA	chr17	79825654	+	TNNT3	chr11	1959751	-
intron-intron	ENST00000372638	ENST00000604560		ChiTaRS3.1			AI344380	CITED4	chr1	41326916	+	BIN2	chr12	51693394	+
intron-intron	ENST00000372638	ENST00000452142		ChiTaRS3.1			AI344380	CITED4	chr1	41326916	+	BIN2	chr12	51693394	+
intron-intron	ENST00000372638	ENST00000267012		ChiTaRS3.1			AI344380	CITED4	chr1	41326916	+	BIN2	chr12	51693394	+
intron-intron	ENST00000372638	ENST00000544402		ChiTaRS3.1			AI344380	CITED4	chr1	41326916	+	BIN2	chr12	51693394	+
intron-intron	ENST00000372638	ENST00000603260		ChiTaRS3.1			AI344380	CITED4	chr1	41326916	+	BIN2	chr12	51693394	+
intron-3UTR	ENST00000380738	ENST00000550697		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380738	ENST00000548580		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380738	ENST00000293422		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380738	ENST00000348108		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380738	ENST00000549017		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380738	ENST00000549566		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380738	ENST00000536128		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380738	ENST00000547649		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380738	ENST00000547408		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380738	ENST00000551589		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380738	ENST00000548400		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380738	ENST00000548293		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380738	ENST00000551954		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000550697		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000548580		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000293422		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000348108		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000549017		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380733	ENST00000549566		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380733	ENST00000536128		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000547649		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380733	ENST00000547408		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380733	ENST00000551589		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380733	ENST00000548400		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380733	ENST00000548293		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380733	ENST00000551954		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000550697		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000548580		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000293422		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000348108		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000549017		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380715	ENST00000549566		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380715	ENST00000536128		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000547649		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380715	ENST00000547408		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380715	ENST00000551589		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380715	ENST00000548400		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380715	ENST00000548293		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380715	ENST00000551954		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000550697		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000548580		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000293422		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000348108		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000549017		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380716	ENST00000549566		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380716	ENST00000536128		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000547649		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380716	ENST00000547408		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380716	ENST00000551589		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000380716	ENST00000548400		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380716	ENST00000548293		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000380716	ENST00000551954		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000550697		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000548580		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000293422		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000348108		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000549017		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000397519	ENST00000549566		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000397519	ENST00000536128		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000547649		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000397519	ENST00000547408		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000397519	ENST00000551589		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000397519	ENST00000548400		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000397519	ENST00000548293		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000397519	ENST00000551954		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000550697		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000548580		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000293422		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000348108		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000549017		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000484265	ENST00000549566		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000484265	ENST00000536128		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000547649		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000484265	ENST00000547408		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000484265	ENST00000551589		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-3UTR	ENST00000484265	ENST00000548400		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000484265	ENST00000548293		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
intron-intron	ENST00000484265	ENST00000551954		ChiTaRS3.1			CN267529	PSIP1	chr9	15474134	+	MYL6	chr12	56555275	+
Frame-shit	ENST00000589651	ENST00000354694		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
In-frame	ENST00000589651	ENST00000402281		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000589651	ENST00000405677		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000589651	ENST00000402284		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
In-frame	ENST00000589651	ENST00000335214		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
5CDS-intron	ENST00000589651	ENST00000492986		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000270233	ENST00000354694		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000270233	ENST00000402281		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000270233	ENST00000405677		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000270233	ENST00000402284		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000270233	ENST00000335214		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
5CDS-intron	ENST00000270233	ENST00000492986		ChiTaRS3.1			BF834926	BCAM	chr19	45322868	-	PES1	chr22	30973048	-
Frame-shit	ENST00000324932	ENST00000372469		ChiTaRS3.1			AY662674	NUP98	chr11	3774544	-	PRRX2	chr9	132481507	+
Frame-shit	ENST00000359171	ENST00000372469		ChiTaRS3.1			AY662674	NUP98	chr11	3774544	-	PRRX2	chr9	132481507	+
Frame-shit	ENST00000355260	ENST00000372469		ChiTaRS3.1			AY662674	NUP98	chr11	3774544	-	PRRX2	chr9	132481507	+
Frame-shit	ENST00000397004	ENST00000372469		ChiTaRS3.1			AY662674	NUP98	chr11	3774544	-	PRRX2	chr9	132481507	+
Frame-shit	ENST00000397007	ENST00000372469		ChiTaRS3.1			AY662674	NUP98	chr11	3774544	-	PRRX2	chr9	132481507	+
intron-3CDS	ENST00000488828	ENST00000372469		ChiTaRS3.1			AY662674	NUP98	chr11	3774544	-	PRRX2	chr9	132481507	+
3UTR-intron	ENST00000392027	ENST00000345512		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
3UTR-3UTR	ENST00000392027	ENST00000373779		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
3UTR-3UTR	ENST00000392027	ENST00000356870		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
3UTR-3UTR	ENST00000392027	ENST00000323874		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
3UTR-3UTR	ENST00000392027	ENST00000428026		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
3UTR-3UTR	ENST00000392027	ENST00000460170		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
3UTR-intron	ENST00000392027	ENST00000415600		ChiTaRS3.1			AA368300	ALPP	chr2	233247048	-	PTPRU	chr1	29652868	-
In-frame	ENST00000372577	ENST00000322644		ChiTaRS3.1			BE819347	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
5CDS-intron	ENST00000372577	ENST00000572844		ChiTaRS3.1			BE819347	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
intron-3CDS	ENST00000550219	ENST00000322644		ChiTaRS3.1			BE819347	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
intron-intron	ENST00000550219	ENST00000572844		ChiTaRS3.1			BE819347	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
In-frame	ENST00000591462	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000591462	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000591462	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000591462	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000591462	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000591462	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
5CDS-intron	ENST00000591462	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000252455	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000252455	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000252455	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000252455	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000252455	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000252455	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
5CDS-intron	ENST00000252455	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000412601	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000412601	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000412601	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000412601	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000412601	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000412601	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
5CDS-intron	ENST00000412601	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000592741	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000592741	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000592741	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000592741	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000592741	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000592741	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
5CDS-intron	ENST00000592741	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000587327	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000587327	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000587327	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000587327	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000587327	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000587327	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
5CDS-intron	ENST00000587327	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000589838	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000589838	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000589838	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000589838	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000589838	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000589838	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
5CDS-intron	ENST00000589838	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-3CDS	ENST00000591510	ENST00000591462		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-3CDS	ENST00000591510	ENST00000252455		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-3CDS	ENST00000591510	ENST00000412601		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-3CDS	ENST00000591510	ENST00000592741		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-3CDS	ENST00000591510	ENST00000587327		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-3CDS	ENST00000591510	ENST00000589838		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
intron-intron	ENST00000591510	ENST00000591510		ChiTaRS3.1			BE938446	PRKCSH	chr19	11557903	+	PRKCSH	chr19	11558347	-
In-frame	ENST00000392069	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392069	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000344493	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000344493	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000350526	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000350526	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000336840	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000336840	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000392070	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392070	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000409551	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000409551	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-3CDS	ENST00000464706	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-5UTR	ENST00000464706	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000409828	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000409828	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000258387	ENST00000379561		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000258387	ENST00000473775		ChiTaRS3.1			EU446645	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000578681	ENST00000334350		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000578681	ENST00000394501		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000578681	ENST00000568475		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000578681	ENST00000567672		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000583590	ENST00000334350		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000583590	ENST00000394501		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000583590	ENST00000568475		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000583590	ENST00000567672		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000359353	ENST00000334350		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000359353	ENST00000394501		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000359353	ENST00000568475		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000359353	ENST00000567672		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000389924	ENST00000334350		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000389924	ENST00000394501		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000389924	ENST00000568475		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000389924	ENST00000567672		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000457800	ENST00000334350		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000457800	ENST00000394501		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000457800	ENST00000568475		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000457800	ENST00000567672		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-5UTR	ENST00000582985	ENST00000334350		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-5UTR	ENST00000582985	ENST00000394501		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-intron	ENST00000582985	ENST00000568475		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-intron	ENST00000582985	ENST00000567672		ChiTaRS3.1			AI061609	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-3CDS	ENST00000357429	ENST00000360319		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000357429	ENST00000422373		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000357429	ENST00000369850		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000357429	ENST00000369856		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000357429	ENST00000344736		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000357429	ENST00000498491		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000397100	ENST00000360319		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000397100	ENST00000422373		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000397100	ENST00000369850		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000397100	ENST00000369856		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000397100	ENST00000344736		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000397100	ENST00000498491		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000397098	ENST00000360319		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000397098	ENST00000422373		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000397098	ENST00000369850		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000397098	ENST00000369856		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000397098	ENST00000344736		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000397098	ENST00000498491		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000488073	ENST00000360319		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000488073	ENST00000422373		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-3CDS	ENST00000488073	ENST00000369850		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000488073	ENST00000369856		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000488073	ENST00000344736		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-intron	ENST00000488073	ENST00000498491		ChiTaRS3.1			BF871816	C7orf50	chr7	1106741	+	FLNA	chrX	153593247	-
intron-5UTR	ENST00000261405	ENST00000541222		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000261405	ENST00000316856		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000261405	ENST00000586534		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000261405	ENST00000592268		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-3UTR	ENST00000261405	ENST00000588826		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000572068	ENST00000541222		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000572068	ENST00000316856		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000572068	ENST00000586534		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000572068	ENST00000592268		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-3UTR	ENST00000572068	ENST00000588826		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000545906	ENST00000541222		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000545906	ENST00000316856		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000545906	ENST00000586534		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-5UTR	ENST00000545906	ENST00000592268		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
intron-3UTR	ENST00000545906	ENST00000588826		ChiTaRS3.1			AW581101	VWF	chr12	6126059	+	RAD23A	chr19	13058664	+
In-frame	ENST00000514251	ENST00000514251		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000514251	ENST00000321464		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000514251	ENST00000441582		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
5CDS-intron	ENST00000514251	ENST00000512327		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000321464	ENST00000514251		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000321464	ENST00000321464		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000321464	ENST00000441582		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
5CDS-intron	ENST00000321464	ENST00000512327		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000441582	ENST00000514251		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000441582	ENST00000321464		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
In-frame	ENST00000441582	ENST00000441582		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
5CDS-intron	ENST00000441582	ENST00000512327		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
intron-3CDS	ENST00000512327	ENST00000514251		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
intron-3CDS	ENST00000512327	ENST00000321464		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
intron-3CDS	ENST00000512327	ENST00000441582		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
intron-intron	ENST00000512327	ENST00000512327		ChiTaRS3.1			BX955280	ZBTB38	chr3	141163518	-	ZBTB38	chr3	141163152	+
intron-3UTR	ENST00000350997	ENST00000350997		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000350997	ENST00000536991		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000350997	ENST00000433932		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000350997	ENST00000460649		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000350997	ENST00000542506		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000350997	ENST00000541683		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000536991	ENST00000350997		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000536991	ENST00000536991		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000536991	ENST00000433932		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000536991	ENST00000460649		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000536991	ENST00000542506		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000536991	ENST00000541683		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000433932	ENST00000350997		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000433932	ENST00000536991		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000433932	ENST00000433932		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000433932	ENST00000460649		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000433932	ENST00000542506		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000433932	ENST00000541683		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000460649	ENST00000350997		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000460649	ENST00000536991		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000460649	ENST00000433932		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000460649	ENST00000460649		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000460649	ENST00000542506		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000460649	ENST00000541683		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000542506	ENST00000350997		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000542506	ENST00000536991		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000542506	ENST00000433932		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000542506	ENST00000460649		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000542506	ENST00000542506		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000542506	ENST00000541683		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000541683	ENST00000350997		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000541683	ENST00000536991		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000541683	ENST00000433932		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-3UTR	ENST00000541683	ENST00000460649		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000541683	ENST00000542506		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000541683	ENST00000541683		ChiTaRS3.1			AW579368	FADS1	chr11	61570587	+	FADS1	chr11	61569706	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BF355935	CDR1	chrX	139865335	-	CDR1	chrX	139866825	-
In-frame	ENST00000310144	ENST00000310144		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000310144	ENST00000582420		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000310144	ENST00000580864		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000310144	ENST00000375812		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000310144	ENST00000581882		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
intron-3CDS	ENST00000582420	ENST00000310144		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
intron-intron	ENST00000582420	ENST00000582420		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
intron-intron	ENST00000582420	ENST00000580864		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
intron-intron	ENST00000582420	ENST00000375812		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
intron-intron	ENST00000582420	ENST00000581882		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
In-frame	ENST00000580864	ENST00000310144		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000580864	ENST00000582420		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000580864	ENST00000580864		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000580864	ENST00000375812		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000580864	ENST00000581882		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
In-frame	ENST00000375812	ENST00000310144		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000375812	ENST00000582420		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000375812	ENST00000580864		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000375812	ENST00000375812		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000375812	ENST00000581882		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
In-frame	ENST00000581882	ENST00000310144		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000581882	ENST00000582420		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000581882	ENST00000580864		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000581882	ENST00000375812		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000581882	ENST00000581882		ChiTaRS3.1			CV422250	PSMC5	chr17	61908502	+	PSMC5	chr17	61908776	-
5CDS-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-5UTR	ENST00000396373	ENST00000486278		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
5CDS-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-5UTR	ENST00000544715	ENST00000486278		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			EU364772	ETV6	chr12	12022903	+	RUNX1	chr21	36265263	-
intron-3CDS	ENST00000222254	ENST00000399808		ChiTaRS3.1			AA376090	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
intron-3CDS	ENST00000222254	ENST00000526811		ChiTaRS3.1			AA376090	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
intron-3CDS	ENST00000222254	ENST00000602735		ChiTaRS3.1			AA376090	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
3UTR-3CDS	ENST00000593731	ENST00000399808		ChiTaRS3.1			AA376090	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
3UTR-3CDS	ENST00000593731	ENST00000526811		ChiTaRS3.1			AA376090	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
3UTR-3CDS	ENST00000593731	ENST00000602735		ChiTaRS3.1			AA376090	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
5CDS-intron	ENST00000359651	ENST00000359651		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000359651	ENST00000367284		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000359651	ENST00000367283		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000359651	ENST00000495848		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000359651		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000367284		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000367283		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000495848		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000359651		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000367284		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000367283		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000495848		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000359651		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000367284		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000367283		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000495848		ChiTaRS3.1			BF804203	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
In-frame	ENST00000344063	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000344063	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000344063	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000344063	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000344063	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-3CDS	ENST00000431533	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000431533	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000431533	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000431533	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-intron	ENST00000431533	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-3CDS	ENST00000428193	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000428193	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000428193	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000428193	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-intron	ENST00000428193	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
In-frame	ENST00000558815	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000558815	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000558815	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000558815	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000558815	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
In-frame	ENST00000560583	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000560583	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000560583	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000560583	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000560583	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
In-frame	ENST00000560055	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000560055	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000560055	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000560055	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000560055	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
In-frame	ENST00000559463	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000559463	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000559463	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000559463	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000559463	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
3UTR-3CDS	ENST00000558131	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
3UTR-5UTR	ENST00000558131	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
3UTR-5UTR	ENST00000558131	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
3UTR-5UTR	ENST00000558131	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
3UTR-intron	ENST00000558131	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-3CDS	ENST00000558752	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000558752	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000558752	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-5UTR	ENST00000558752	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
intron-intron	ENST00000558752	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
In-frame	ENST00000458349	ENST00000307363		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000458349	ENST00000399402		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000458349	ENST00000445488		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-5UTR	ENST00000458349	ENST00000307377		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000458349	ENST00000497796		ChiTaRS3.1			DA524376	RPL28	chr19	55899416	+	GLB1	chr3	33114206	-
5CDS-intron	ENST00000346329	ENST00000259523		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000346329	ENST00000377970		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000346329	ENST00000524013		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000301843	ENST00000259523		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000301843	ENST00000377970		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000301843	ENST00000524013		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
intron-intron	ENST00000527622	ENST00000259523		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
intron-intron	ENST00000527622	ENST00000377970		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
intron-intron	ENST00000527622	ENST00000524013		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000376561	ENST00000259523		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000376561	ENST00000377970		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
5CDS-intron	ENST00000376561	ENST00000524013		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
intron-intron	ENST00000538675	ENST00000259523		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
intron-intron	ENST00000538675	ENST00000377970		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
intron-intron	ENST00000538675	ENST00000524013		ChiTaRS3.1			BG953255	CTTN	chr11	70260711	+	MYC	chr8	128752824	+
Frame-shit	ENST00000325321	ENST00000430479		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000399357		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000420159		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000343495		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000242066		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000405192		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000405358		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000403527		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000405218		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000325321	ENST00000403685		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5CDS-5UTR	ENST00000325321	ENST00000476720		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000430479		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000399357		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000420159		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000343495		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000242066		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000405192		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000405358		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000403527		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000405218		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-3CDS	ENST00000391810	ENST00000403685		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5UTR-5UTR	ENST00000391810	ENST00000476720		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000430479		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000399357		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000420159		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000343495		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000242066		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000405192		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000405358		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000403527		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000405218		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
Frame-shit	ENST00000358049	ENST00000403685		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
5CDS-5UTR	ENST00000358049	ENST00000476720		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000430479		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000399357		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000420159		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000343495		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000242066		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000405192		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000405358		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000403527		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000405218		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000597509	ENST00000403685		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-5UTR	ENST00000597509	ENST00000476720		ChiTaRS3.1			HM245385	KLK2	chr19	51376775	+	ETV1	chr7	13971375	-
intron-3CDS	ENST00000372014	ENST00000372014		ChiTaRS3.1			AA434296	MRPL14	chr6	44095124	+	MRPL14	chr6	44081649	-
intron-3CDS	ENST00000314393	ENST00000349699		ChiTaRS3.1			DB040320	ZHX2	chr8	123794337	+	DDX52	chr17	35988717	-
intron-3CDS	ENST00000314393	ENST00000394367		ChiTaRS3.1			DB040320	ZHX2	chr8	123794337	+	DDX52	chr17	35988717	-
In-frame	ENST00000438793	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000438793	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000438793	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000438793	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000438793	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000438793	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000438793	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000438793	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000346918	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000346918	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000379787	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000379787	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000348126	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000348126	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000304400	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000304400	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000274392	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000274392	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
In-frame	ENST00000455264	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
5CDS-intron	ENST00000455264	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000438793		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000346918		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000379787		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000348126		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000304400		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000274392		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3CDS	ENST00000513648	ENST00000455264		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-intron	ENST00000513648	ENST00000513648		ChiTaRS3.1			BM699806	PAM	chr5	102345529	-	PAM	chr5	102353088	+
intron-3UTR	ENST00000384994	ENST00000373103		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3UTR	ENST00000384994	ENST00000373106		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3UTR	ENST00000384994	ENST00000373104		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3UTR	ENST00000384994	ENST00000361632		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3UTR	ENST00000384994	ENST00000331941		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-5UTR	ENST00000384994	ENST00000487540		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3UTR	ENST00000384994	ENST00000418048		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3UTR	ENST00000384994	ENST00000338937		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-intron	ENST00000384994	ENST00000440588		ChiTaRS3.1			C18833	NEAT1	chr11	65190685	+	CSF3R	chr1	36931803	-
intron-3CDS	ENST00000263650	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000263650	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000263650	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000263650	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000263650	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000263650	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000263650	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000389989	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000389989	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000389989	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000389989	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000389989	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000389989	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000389989	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000525498	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000525498	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000525498	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000525498	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000525498	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000525498	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000525498	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000542243	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000542243	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000542243	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000542243	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000542243	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000542243	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000542243	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000348039	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000348039	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000348039	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000348039	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000348039	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000348039	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000348039	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000478260	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000478260	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000478260	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000478260	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000478260	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000478260	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000478260	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000528124	ENST00000263650		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000528124	ENST00000389989		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000528124	ENST00000525498		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000528124	ENST00000542243		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000528124	ENST00000348039		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3CDS	ENST00000528124	ENST00000478260		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-intron	ENST00000528124	ENST00000528124		ChiTaRS3.1			CB049069	OSBPL5	chr11	3115049	+	OSBPL5	chr11	3114111	+
intron-3UTR	ENST00000359337	ENST00000359867		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000359337	ENST00000396832		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000359337	ENST00000400206		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000359337	ENST00000403904		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000359337	ENST00000413574		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000359337	ENST00000405675		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000359337	ENST00000498529		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000449103	ENST00000359867		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000449103	ENST00000396832		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000449103	ENST00000400206		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000449103	ENST00000403904		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000449103	ENST00000413574		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000449103	ENST00000405675		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000449103	ENST00000498529		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000496720	ENST00000359867		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000496720	ENST00000396832		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-3UTR	ENST00000496720	ENST00000400206		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000496720	ENST00000403904		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000496720	ENST00000413574		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000496720	ENST00000405675		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-intron	ENST00000496720	ENST00000498529		ChiTaRS3.1			BF875561	PLXNB2	chr22	50719618	+	CSNK1E	chr22	38687430	-
intron-5UTR	ENST00000282050	ENST00000221169		ChiTaRS3.1			DA148364	ATP5A1	chr18	43671770	-	NEFL	chr8	24814131	-
intron-5UTR	ENST00000593152	ENST00000221169		ChiTaRS3.1			DA148364	ATP5A1	chr18	43671770	-	NEFL	chr8	24814131	-
intron-5UTR	ENST00000590665	ENST00000221169		ChiTaRS3.1			DA148364	ATP5A1	chr18	43671770	-	NEFL	chr8	24814131	-
intron-5UTR	ENST00000398752	ENST00000221169		ChiTaRS3.1			DA148364	ATP5A1	chr18	43671770	-	NEFL	chr8	24814131	-
intron-5UTR	ENST00000591267	ENST00000221169		ChiTaRS3.1			DA148364	ATP5A1	chr18	43671770	-	NEFL	chr8	24814131	-
5CDS-5UTR	ENST00000356948	ENST00000356948		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000356948	ENST00000350092		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000356948	ENST00000349038		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000356948	ENST00000394601		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
intron-5UTR	ENST00000350092	ENST00000356948		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
intron-5UTR	ENST00000350092	ENST00000350092		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
intron-5UTR	ENST00000350092	ENST00000349038		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
intron-5UTR	ENST00000350092	ENST00000394601		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000349038	ENST00000356948		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000349038	ENST00000350092		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000349038	ENST00000349038		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000349038	ENST00000394601		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000394601	ENST00000356948		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000394601	ENST00000350092		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000394601	ENST00000349038		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
5CDS-5UTR	ENST00000394601	ENST00000394601		ChiTaRS3.1			AW881297	PTBP1	chr19	804109	-	PTBP1	chr19	797449	+
In-frame	ENST00000375712	ENST00000286398		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
In-frame	ENST00000375712	ENST00000374793		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
In-frame	ENST00000375712	ENST00000303219		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
In-frame	ENST00000375712	ENST00000374787		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
intron-3CDS	ENST00000418717	ENST00000286398		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
intron-3CDS	ENST00000418717	ENST00000374793		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
intron-3CDS	ENST00000418717	ENST00000303219		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
intron-3CDS	ENST00000418717	ENST00000374787		ChiTaRS3.1			BF908969	KIF3B	chr20	30898885	-	SMC2	chr9	106889657	-
3UTR-3UTR	ENST00000370179	ENST00000370179		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
3UTR-intron	ENST00000370179	ENST00000370177		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
3UTR-intron	ENST00000370179	ENST00000473620		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-3UTR	ENST00000370177	ENST00000370179		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-intron	ENST00000370177	ENST00000370177		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-intron	ENST00000370177	ENST00000473620		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-3UTR	ENST00000473620	ENST00000370179		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-intron	ENST00000473620	ENST00000370177		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-intron	ENST00000473620	ENST00000473620		ChiTaRS3.1			AA679651	PPDPF	chr20	62153443	-	PPDPF	chr20	62153394	+
intron-3CDS	ENST00000572173	ENST00000006658		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000572173	ENST00000356488		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000572173	ENST00000393244		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3UTR	ENST00000572173	ENST00000511937		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000572992	ENST00000006658		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000572992	ENST00000356488		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000572992	ENST00000393244		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3UTR	ENST00000572992	ENST00000511937		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000381820	ENST00000006658		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000381820	ENST00000356488		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000381820	ENST00000393244		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3UTR	ENST00000381820	ENST00000511937		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000312499	ENST00000006658		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000312499	ENST00000356488		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000312499	ENST00000393244		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3UTR	ENST00000312499	ENST00000511937		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000576027	ENST00000006658		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000576027	ENST00000356488		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3CDS	ENST00000576027	ENST00000393244		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
intron-3UTR	ENST00000576027	ENST00000511937		ChiTaRS3.1			DB024173	RMI2	chr16	11370162	-	SPATA20	chr17	48627411	+
Frame-shit	ENST00000262429	ENST00000262429		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
Frame-shit	ENST00000262429	ENST00000416219		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
5CDS-3UTR	ENST00000262429	ENST00000420010		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
Frame-shit	ENST00000416219	ENST00000262429		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
Frame-shit	ENST00000416219	ENST00000416219		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
5CDS-3UTR	ENST00000416219	ENST00000420010		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
3UTR-3CDS	ENST00000420010	ENST00000262429		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
3UTR-3CDS	ENST00000420010	ENST00000416219		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
3UTR-3UTR	ENST00000420010	ENST00000420010		ChiTaRS3.1			AF114127	ATP2C2	chr16	84494372	-	ATP2C2	chr16	84485657	+
intron-intron	ENST00000453363	ENST00000470422		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000453363	ENST00000246043		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000453363	ENST00000377813		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000453363	ENST00000377807		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000453363	ENST00000360807		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000453363	ENST00000455029		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000316193	ENST00000470422		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000316193	ENST00000246043		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000316193	ENST00000377813		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000316193	ENST00000377807		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000316193	ENST00000360807		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000316193	ENST00000455029		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000329882	ENST00000470422		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000329882	ENST00000246043		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000329882	ENST00000377813		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000329882	ENST00000377807		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000329882	ENST00000360807		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000329882	ENST00000455029		ChiTaRS3.1			BG013671	CSH1	chr17	61972346	-	RRBP1	chr20	17640824	-
intron-intron	ENST00000199389	ENST00000448521		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000456905		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000440166		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000452943		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000468694		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000494774		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000490734		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000199389	ENST00000497184		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000448521		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000456905		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000440166		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000452943		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000468694		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000494774		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000490734		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000536084	ENST00000497184		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000448521		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000456905		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000440166		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000452943		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000468694		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000494774		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000490734		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-intron	ENST00000495565	ENST00000497184		ChiTaRS3.1			BF895041	EIF2AK1	chr7	6063719	-	DBNL	chr7	44085880	+
intron-3CDS	ENST00000375499	ENST00000375499		ChiTaRS3.1			CB157553	SDHB	chr1	17380473	+	SDHB	chr1	17359639	-
intron-5UTR	ENST00000375499	ENST00000466613		ChiTaRS3.1			CB157553	SDHB	chr1	17380473	+	SDHB	chr1	17359639	-
intron-3CDS	ENST00000466613	ENST00000375499		ChiTaRS3.1			CB157553	SDHB	chr1	17380473	+	SDHB	chr1	17359639	-
intron-5UTR	ENST00000466613	ENST00000466613		ChiTaRS3.1			CB157553	SDHB	chr1	17380473	+	SDHB	chr1	17359639	-
intron-intron	ENST00000375441	ENST00000375441		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375441	ENST00000451881		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375441	ENST00000326335		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375441	ENST00000375440		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-3UTR	ENST00000375441	ENST00000463426		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000451881	ENST00000375441		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000451881	ENST00000451881		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000451881	ENST00000326335		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000451881	ENST00000375440		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-3UTR	ENST00000451881	ENST00000463426		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000326335	ENST00000375441		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000326335	ENST00000451881		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000326335	ENST00000326335		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000326335	ENST00000375440		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-3UTR	ENST00000326335	ENST00000463426		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375440	ENST00000375441		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375440	ENST00000451881		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375440	ENST00000326335		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000375440	ENST00000375440		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-3UTR	ENST00000375440	ENST00000463426		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
3UTR-intron	ENST00000463426	ENST00000375441		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
3UTR-intron	ENST00000463426	ENST00000451881		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
3UTR-intron	ENST00000463426	ENST00000326335		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
3UTR-intron	ENST00000463426	ENST00000375440		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
3UTR-3UTR	ENST00000463426	ENST00000463426		ChiTaRS3.1			AW389415	CUL4A	chr13	113884340	-	CUL4A	chr13	113884071	+
intron-intron	ENST00000360876	ENST00000265465		ChiTaRS3.1			BI010845	EIF3B	chr7	2418772	-	POLA2	chr11	65047359	-
intron-intron	ENST00000360876	ENST00000541089		ChiTaRS3.1			BI010845	EIF3B	chr7	2418772	-	POLA2	chr11	65047359	-
intron-intron	ENST00000360876	ENST00000534785		ChiTaRS3.1			BI010845	EIF3B	chr7	2418772	-	POLA2	chr11	65047359	-
intron-intron	ENST00000397011	ENST00000265465		ChiTaRS3.1			BI010845	EIF3B	chr7	2418772	-	POLA2	chr11	65047359	-
intron-intron	ENST00000397011	ENST00000541089		ChiTaRS3.1			BI010845	EIF3B	chr7	2418772	-	POLA2	chr11	65047359	-
intron-intron	ENST00000397011	ENST00000534785		ChiTaRS3.1			BI010845	EIF3B	chr7	2418772	-	POLA2	chr11	65047359	-
intron-5UTR	ENST00000311549	ENST00000359651		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000311549	ENST00000367284		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000311549	ENST00000367283		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-3UTR	ENST00000311549	ENST00000495848		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000272274	ENST00000359651		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000272274	ENST00000367284		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000272274	ENST00000367283		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-3UTR	ENST00000272274	ENST00000495848		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000319826	ENST00000359651		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000319826	ENST00000367284		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000319826	ENST00000367283		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-3UTR	ENST00000319826	ENST00000495848		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000326092	ENST00000359651		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000326092	ENST00000367284		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-5UTR	ENST00000326092	ENST00000367283		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-3UTR	ENST00000326092	ENST00000495848		ChiTaRS3.1			DA999428	RPL21	chr13	27829269	+	ELF3	chr1	201979753	+
intron-intron	ENST00000394126	ENST00000394126		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394126	ENST00000356271		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394126	ENST00000394128		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394126	ENST00000394127		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394126	ENST00000501516		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394126	ENST00000479829		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000356271	ENST00000394126		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000356271	ENST00000356271		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000356271	ENST00000394128		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000356271	ENST00000394127		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000356271	ENST00000501516		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000356271	ENST00000479829		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394128	ENST00000394126		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394128	ENST00000356271		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394128	ENST00000394128		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394128	ENST00000394127		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394128	ENST00000501516		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394128	ENST00000479829		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394127	ENST00000394126		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394127	ENST00000356271		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394127	ENST00000394128		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394127	ENST00000394127		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394127	ENST00000501516		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000394127	ENST00000479829		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000501516	ENST00000394126		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000501516	ENST00000356271		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000501516	ENST00000394128		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000501516	ENST00000394127		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000501516	ENST00000501516		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000501516	ENST00000479829		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000479829	ENST00000394126		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000479829	ENST00000356271		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000479829	ENST00000394128		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000479829	ENST00000394127		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000479829	ENST00000501516		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-intron	ENST00000479829	ENST00000479829		ChiTaRS3.1			CV410516	MED24	chr17	38189708	-	MED24	chr17	38189951	+
intron-3UTR	ENST00000260323	ENST00000225964		ChiTaRS3.1			BG997109	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000537900	ENST00000225964		ChiTaRS3.1			BG997109	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000545554	ENST00000225964		ChiTaRS3.1			BG997109	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000539562	ENST00000225964		ChiTaRS3.1			BG997109	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000262738	ENST00000357066		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000262738	ENST00000592143		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000262738	ENST00000592280		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-3UTR	ENST00000395964	ENST00000357066		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000395964	ENST00000592143		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000395964	ENST00000592280		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-3UTR	ENST00000497509	ENST00000357066		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000497509	ENST00000592143		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000497509	ENST00000592280		ChiTaRS3.1			BF841962	CELSR1	chr22	46859782	-	MOB3A	chr19	2071592	-
intron-intron	ENST00000329421	ENST00000544935		ChiTaRS3.1			BI012593	MARCKSL1	chr1	32800256	+	PRKAR1B	chr7	678915	-
intron-intron	ENST00000329421	ENST00000537384		ChiTaRS3.1			BI012593	MARCKSL1	chr1	32800256	+	PRKAR1B	chr7	678915	-
intron-intron	ENST00000329421	ENST00000406797		ChiTaRS3.1			BI012593	MARCKSL1	chr1	32800256	+	PRKAR1B	chr7	678915	-
intron-intron	ENST00000329421	ENST00000403562		ChiTaRS3.1			BI012593	MARCKSL1	chr1	32800256	+	PRKAR1B	chr7	678915	-
intron-intron	ENST00000329421	ENST00000360274		ChiTaRS3.1			BI012593	MARCKSL1	chr1	32800256	+	PRKAR1B	chr7	678915	-
intron-intron	ENST00000329421	ENST00000488474		ChiTaRS3.1			BI012593	MARCKSL1	chr1	32800256	+	PRKAR1B	chr7	678915	-
5CDS-5UTR	ENST00000437398	ENST00000437398		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000437398	ENST00000314328		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000437398	ENST00000541492		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-3UTR	ENST00000437398	ENST00000416735		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000314328	ENST00000437398		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000314328	ENST00000314328		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000314328	ENST00000541492		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-3UTR	ENST00000314328	ENST00000416735		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000541492	ENST00000437398		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000541492	ENST00000314328		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-5UTR	ENST00000541492	ENST00000541492		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
5CDS-3UTR	ENST00000541492	ENST00000416735		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
3UTR-5UTR	ENST00000416735	ENST00000437398		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
3UTR-5UTR	ENST00000416735	ENST00000314328		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
3UTR-5UTR	ENST00000416735	ENST00000541492		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
3UTR-3UTR	ENST00000416735	ENST00000416735		ChiTaRS3.1			BF746909	SPECC1L	chr22	24709434	+	SPECC1L	chr22	24698158	+
intron-3CDS	ENST00000286953	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000286953	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000286953	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000554880	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000554880	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000554880	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000555030	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000555030	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000555030	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000414262	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000414262	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000414262	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000553430	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000553430	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000553430	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000557040	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000557040	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000557040	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000553449	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000553449	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000553449	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-3CDS	ENST00000554713	ENST00000380516		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-5UTR	ENST00000554713	ENST00000536328		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000554713	ENST00000557950		ChiTaRS3.1			DW417059	C14orf2	chr14	104381462	-	SLTM	chr15	59189362	-
intron-intron	ENST00000295055	ENST00000444214		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000295055	ENST00000550765		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000295055	ENST00000552878		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-3UTR	ENST00000295055	ENST00000453172		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000534090	ENST00000444214		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000534090	ENST00000550765		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000534090	ENST00000552878		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-3UTR	ENST00000534090	ENST00000453172		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000465960	ENST00000444214		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000465960	ENST00000550765		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-intron	ENST00000465960	ENST00000552878		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
intron-3UTR	ENST00000465960	ENST00000453172		ChiTaRS3.1			AW391785	CAPN13	chr2	30945863	-	FKBP11	chr12	49317243	+
5CDS-5UTR	ENST00000588240	ENST00000338488		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000588240	ENST00000395097		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000588240	ENST00000330847		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000338488		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000395097		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000330847		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000338488		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000395097		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000330847		ChiTaRS3.1			AF162670	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
intron-3UTR	ENST00000448662	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000448662	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000448662	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000431808	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000431808	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000284776	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000284776	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000437304	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000437304	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000319471	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000319471	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000449407	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000449407	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000355634	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000355634	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000393528	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000393528	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000418609	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000418609	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000448662		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000431808		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000284776		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000437304		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000319471		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000449407		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000355634		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000393528		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-3UTR	ENST00000498125	ENST00000418609		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000498125	ENST00000498125		ChiTaRS3.1			AI868078	SORBS2	chr4	186508602	+	SORBS2	chr4	186508749	-
intron-intron	ENST00000375453	ENST00000375453		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
intron-intron	ENST00000375453	ENST00000375448		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
intron-intron	ENST00000375453	ENST00000487048		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
5CDS-intron	ENST00000375448	ENST00000375453		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
5CDS-intron	ENST00000375448	ENST00000375448		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
5CDS-intron	ENST00000375448	ENST00000487048		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
intron-intron	ENST00000487048	ENST00000375453		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
intron-intron	ENST00000487048	ENST00000375448		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
intron-intron	ENST00000487048	ENST00000487048		ChiTaRS3.1			BI028809	PADI4	chr1	17668594	+	PADI4	chr1	17666294	-
intron-intron	ENST00000204726	ENST00000447110		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000204726	ENST00000581552		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000204726	ENST00000584803		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000204726	ENST00000583222		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000447110		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000581552		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000584803		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000583222		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000447110		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000581552		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000584803		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000583222		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000447110		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000581552		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000584803		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000583222		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000447110		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000581552		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000584803		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000583222		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000447110		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000581552		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000584803		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000583222		ChiTaRS3.1			BF903043	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000446856	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000446856	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000264758	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000264758	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000398125	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000398125	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000513328	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000513328	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000503455	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000503455	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000355842	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000355842	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000398123	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000398123	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000398129	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000398129	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000538860	ENST00000361204		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
intron-intron	ENST00000538860	ENST00000491541		ChiTaRS3.1			BI040292	ADD1	chr4	2910483	-	SREBF2	chr22	42297807	-
In-frame	ENST00000412615	ENST00000412615		ChiTaRS3.1			BF928333	TRAFD1	chr12	112583466	+	TRAFD1	chr12	112586012	-
In-frame	ENST00000412615	ENST00000257604		ChiTaRS3.1			BF928333	TRAFD1	chr12	112583466	+	TRAFD1	chr12	112586012	-
In-frame	ENST00000257604	ENST00000412615		ChiTaRS3.1			BF928333	TRAFD1	chr12	112583466	+	TRAFD1	chr12	112586012	-
In-frame	ENST00000257604	ENST00000257604		ChiTaRS3.1			BF928333	TRAFD1	chr12	112583466	+	TRAFD1	chr12	112586012	-
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408946	AFF1	chr4	87969550	+	KMT2A	chr11	118354832	+
intron-3UTR	ENST00000539054	ENST00000539054		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-3UTR	ENST00000539054	ENST00000379757		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-intron	ENST00000539054	ENST00000473453		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-3UTR	ENST00000379757	ENST00000539054		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-3UTR	ENST00000379757	ENST00000379757		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-intron	ENST00000379757	ENST00000473453		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-3UTR	ENST00000473453	ENST00000539054		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-3UTR	ENST00000473453	ENST00000379757		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-intron	ENST00000473453	ENST00000473453		ChiTaRS3.1			BE142656	TXNDC5	chr6	7882424	+	TXNDC5	chr6	7882531	-
intron-intron	ENST00000335895	ENST00000414350		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000343632		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000381756		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000405147		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000325180		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000337437		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000406772		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000488672		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000414350		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000343632		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000381756		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000405147		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000325180		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000337437		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000406772		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000488672		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000414350		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000343632		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000381756		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000405147		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000325180		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000337437		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000406772		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000488672		ChiTaRS3.1			DB454451	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
3UTR-intron	ENST00000332556	ENST00000020673		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000332556	ENST00000406432		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000332556	ENST00000492902		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000397181	ENST00000020673		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000397181	ENST00000406432		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000397181	ENST00000492902		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000471046	ENST00000020673		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000471046	ENST00000406432		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000471046	ENST00000492902		ChiTaRS3.1			BI045069	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
In-frame	ENST00000320580	ENST00000320580		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
5CDS-intron	ENST00000320580	ENST00000529757		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
5CDS-intron	ENST00000320580	ENST00000524815		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-3CDS	ENST00000529757	ENST00000320580		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-intron	ENST00000529757	ENST00000529757		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-intron	ENST00000529757	ENST00000524815		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-3CDS	ENST00000524815	ENST00000320580		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-intron	ENST00000524815	ENST00000529757		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-intron	ENST00000524815	ENST00000524815		ChiTaRS3.1			BG007077	PACS1	chr11	65977925	+	PACS1	chr11	65838281	-
intron-intron	ENST00000462833	ENST00000312233		ChiTaRS3.1			BI037155	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
intron-intron	ENST00000491190	ENST00000312233		ChiTaRS3.1			BI037155	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
intron-intron	ENST00000309879	ENST00000312233		ChiTaRS3.1			BI037155	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
intron-intron	ENST00000470367	ENST00000312233		ChiTaRS3.1			BI037155	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
5CDS-intron	ENST00000338970	ENST00000426540		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000338970	ENST00000431636		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000338970	ENST00000341840		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000338970	ENST00000273320		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000396203	ENST00000426540		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000396203	ENST00000431636		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000396203	ENST00000341840		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
5CDS-intron	ENST00000396203	ENST00000273320		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
3UTR-intron	ENST00000416518	ENST00000426540		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
3UTR-intron	ENST00000416518	ENST00000431636		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
3UTR-intron	ENST00000416518	ENST00000341840		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
3UTR-intron	ENST00000416518	ENST00000273320		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
intron-intron	ENST00000461368	ENST00000426540		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
intron-intron	ENST00000461368	ENST00000431636		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
intron-intron	ENST00000461368	ENST00000341840		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
intron-intron	ENST00000461368	ENST00000273320		ChiTaRS3.1			BE047068	RPL14	chr3	40503526	-	ZKSCAN7	chr3	44621990	+
intron-3CDS	ENST00000263233	ENST00000491148		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-3CDS	ENST00000263233	ENST00000282957		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-intron	ENST00000263233	ENST00000498639		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-3CDS	ENST00000538567	ENST00000491148		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-3CDS	ENST00000538567	ENST00000282957		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-intron	ENST00000538567	ENST00000498639		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-3CDS	ENST00000479808	ENST00000491148		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-3CDS	ENST00000479808	ENST00000282957		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-intron	ENST00000479808	ENST00000498639		ChiTaRS3.1			BQ778546	SYP	chrX	49054828	-	CPB1	chr3	148545668	+
intron-3CDS	ENST00000593711	ENST00000300835		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000593711	ENST00000542965		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000593711	ENST00000571654		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000221722	ENST00000300835		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000221722	ENST00000542965		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000221722	ENST00000571654		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000391708	ENST00000300835		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000391708	ENST00000542965		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000391708	ENST00000571654		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000601070	ENST00000300835		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000601070	ENST00000542965		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000601070	ENST00000571654		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000599935	ENST00000300835		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000599935	ENST00000542965		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000599935	ENST00000571654		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000593931	ENST00000300835		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000593931	ENST00000542965		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000593931	ENST00000571654		ChiTaRS3.1			BI545147	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000264896	ENST00000396402		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000264896	ENST00000260433		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000264896	ENST00000396404		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000264896	ENST00000559878		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000264896	ENST00000405913		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000264896	ENST00000557858		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-intron	ENST00000264896	ENST00000492852		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000452464	ENST00000396402		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000452464	ENST00000260433		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000452464	ENST00000396404		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000452464	ENST00000559878		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000452464	ENST00000405913		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-3CDS	ENST00000452464	ENST00000557858		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
intron-intron	ENST00000452464	ENST00000492852		ChiTaRS3.1			BF989796	SCARB2	chr4	77082719	-	CYP19A1	chr15	51535047	-
5UTR-3CDS	ENST00000379996	ENST00000351989		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
5UTR-3CDS	ENST00000379996	ENST00000383024		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
5UTR-3CDS	ENST00000379996	ENST00000407755		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-3CDS	ENST00000379989	ENST00000351989		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-3CDS	ENST00000379989	ENST00000383024		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-3CDS	ENST00000379989	ENST00000407755		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-3CDS	ENST00000463994	ENST00000351989		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-3CDS	ENST00000463994	ENST00000383024		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-3CDS	ENST00000463994	ENST00000407755		ChiTaRS3.1			BI547806	CDKL5	chrX	18443815	+	DGCR8	chr22	20093699	+
intron-intron	ENST00000425967	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000425967	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000425967	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000425967	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000425967	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000425967	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397091	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397091	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397091	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397091	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397091	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397091	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000447712	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000447712	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000447712	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000447712	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000447712	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000447712	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000341462	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000341462	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000341462	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000341462	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000341462	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000341462	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000532791	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000532791	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000532791	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000532791	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000532791	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000532791	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397113	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397113	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397113	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397113	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397113	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397113	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000356207	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000356207	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000356207	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000356207	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000356207	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000356207	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000335922	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000335922	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000335922	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000335922	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000335922	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000335922	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000326324	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000326324	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000326324	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000326324	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000326324	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000326324	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397103	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397103	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397103	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397103	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397103	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397103	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397108	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397108	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000397108	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397108	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397108	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000397108	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000496629	ENST00000425967		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000397091		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000447712		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000341462		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000532791		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000496629	ENST00000397113		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000356207		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000335922		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-5UTR	ENST00000496629	ENST00000326324		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000496629	ENST00000397103		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000496629	ENST00000397108		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000496629	ENST00000496629		ChiTaRS3.1			CN333257	FGFR1	chr8	38287355	-	FGFR1	chr8	38325792	-
intron-intron	ENST00000369831	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369831	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369831	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000460717	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000460717	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000460717	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369827	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369827	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369827	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000442650	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000442650	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000442650	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000464206	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000464206	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000464206	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000241337	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000241337	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000241337	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000414179	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000414179	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000414179	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369829	ENST00000344938		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369829	ENST00000344408		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
intron-intron	ENST00000369829	ENST00000310917		ChiTaRS3.1			AW386100	GSTM2	chr1	110256544	+	EVC2	chr4	5671338	+
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF232001	KMT2A	chr11	118363838	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000331457	ENST00000401088		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
Frame-shit	ENST00000331457	ENST00000471507		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
Frame-shit	ENST00000331457	ENST00000401089		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
Frame-shit	ENST00000331457	ENST00000375590		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
Frame-shit	ENST00000331457	ENST00000492354		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
5CDS-3UTR	ENST00000331457	ENST00000472461		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
3UTR-3CDS	ENST00000433341	ENST00000401088		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
3UTR-3CDS	ENST00000433341	ENST00000471507		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
3UTR-3CDS	ENST00000433341	ENST00000401089		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
3UTR-3CDS	ENST00000433341	ENST00000375590		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
3UTR-3CDS	ENST00000433341	ENST00000492354		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
3UTR-3UTR	ENST00000433341	ENST00000472461		ChiTaRS3.1			DB064896	DRG1	chr22	31799126	+	SZRD1	chr1	16719832	+
intron-3CDS	ENST00000429723	ENST00000251081		ChiTaRS3.1			AW999030	EEF1E1	chr6	8090400	-	DSC2	chr18	28660320	-
intron-3CDS	ENST00000429723	ENST00000280904		ChiTaRS3.1			AW999030	EEF1E1	chr6	8090400	-	DSC2	chr18	28660320	-
intron-3CDS	ENST00000379715	ENST00000251081		ChiTaRS3.1			AW999030	EEF1E1	chr6	8090400	-	DSC2	chr18	28660320	-
intron-3CDS	ENST00000379715	ENST00000280904		ChiTaRS3.1			AW999030	EEF1E1	chr6	8090400	-	DSC2	chr18	28660320	-
intron-3CDS	ENST00000507463	ENST00000251081		ChiTaRS3.1			AW999030	EEF1E1	chr6	8090400	-	DSC2	chr18	28660320	-
intron-3CDS	ENST00000507463	ENST00000280904		ChiTaRS3.1			AW999030	EEF1E1	chr6	8090400	-	DSC2	chr18	28660320	-
intron-intron	ENST00000368020	ENST00000378137		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368020	ENST00000325718		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368020	ENST00000579179		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368021	ENST00000378137		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368021	ENST00000325718		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368021	ENST00000579179		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000435396	ENST00000378137		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000435396	ENST00000325718		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000435396	ENST00000579179		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368019	ENST00000378137		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368019	ENST00000325718		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-intron	ENST00000368019	ENST00000579179		ChiTaRS3.1			DA117378	USF1	chr1	161013107	-	MLLT6	chr17	36872848	+
intron-3CDS	ENST00000323851	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000323851	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000323851	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000323851	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000323851	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000354944	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000354944	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000354944	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000354944	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000354944	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000521414	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000521414	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000521414	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000521414	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000521414	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000537882	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000537882	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000537882	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000537882	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000537882	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000414097	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000414097	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000414097	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000414097	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000414097	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000518176	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000518176	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000518176	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000518176	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000518176	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000522476	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000522476	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000522476	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000522476	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000522476	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000518066	ENST00000308664		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000518066	ENST00000395494		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000518066	ENST00000539276		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000518066	ENST00000550248		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-intron	ENST00000518066	ENST00000552636		ChiTaRS3.1			BF917195	NDRG1	chr8	134251059	-	ATP2A2	chr12	110778670	-
intron-3CDS	ENST00000390168	ENST00000450454		ChiTaRS3.1			BG008301	H19	chr11	2018315	+	TCEA3	chr1	23743875	-
intron-3CDS	ENST00000390168	ENST00000374601		ChiTaRS3.1			BG008301	H19	chr11	2018315	+	TCEA3	chr1	23743875	-
intron-3CDS	ENST00000390168	ENST00000461794		ChiTaRS3.1			BG008301	H19	chr11	2018315	+	TCEA3	chr1	23743875	-
intron-intron	ENST00000323060	ENST00000323060		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000323060	ENST00000263275		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000323060	ENST00000544371		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000263275	ENST00000323060		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000263275	ENST00000263275		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000263275	ENST00000544371		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000544371	ENST00000323060		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000544371	ENST00000263275		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-intron	ENST00000544371	ENST00000544371		ChiTaRS3.1			BG994361	OPA3	chr19	46054019	-	OPA3	chr19	46056864	-
intron-3CDS	ENST00000354293	ENST00000246190		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-3CDS	ENST00000354293	ENST00000375238		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-5UTR	ENST00000354293	ENST00000606525		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-3CDS	ENST00000600199	ENST00000246190		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-3CDS	ENST00000600199	ENST00000375238		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-5UTR	ENST00000600199	ENST00000606525		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-3CDS	ENST00000359032	ENST00000246190		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-3CDS	ENST00000359032	ENST00000375238		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
intron-5UTR	ENST00000359032	ENST00000606525		ChiTaRS3.1			BE818164	AP2A1	chr19	50291815	-	NECAB3	chr20	32247515	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			M25946	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			M25946	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			M25946	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			M25946	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000358580	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
In-frame	ENST00000358580	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
In-frame	ENST00000358580	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
In-frame	ENST00000358580	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
In-frame	ENST00000358580	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
In-frame	ENST00000358580	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
In-frame	ENST00000358580	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
5CDS-intron	ENST00000358580	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000354402	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
5CDS-intron	ENST00000354402	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000356738	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
5CDS-intron	ENST00000356738	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000357560	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
5CDS-intron	ENST00000357560	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000508496	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-intron	ENST00000508496	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000412920	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
5CDS-intron	ENST00000412920	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
Frame-shit	ENST00000511201	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
5CDS-intron	ENST00000511201	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000358580		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000354402		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000356738		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000357560		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000508496		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000412920		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-3CDS	ENST00000507279	ENST00000511201		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
intron-intron	ENST00000507279	ENST00000507279		ChiTaRS3.1			BF737830	APBB3	chr5	139941688	-	APBB3	chr5	139940984	+
3UTR-3CDS	ENST00000307980	ENST00000312989		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-5UTR	ENST00000307980	ENST00000532446		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-5UTR	ENST00000307980	ENST00000376745		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-intron	ENST00000307980	ENST00000358239		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-3CDS	ENST00000535644	ENST00000312989		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-5UTR	ENST00000535644	ENST00000532446		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-5UTR	ENST00000535644	ENST00000376745		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
3UTR-intron	ENST00000535644	ENST00000358239		ChiTaRS3.1			BI029138	RAD9A	chr11	67165768	-	PPP1CA	chr11	67168615	-
In-frame	ENST00000254108	ENST00000262053		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
5CDS-5UTR	ENST00000254108	ENST00000539132		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
In-frame	ENST00000380244	ENST00000262053		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
5CDS-5UTR	ENST00000380244	ENST00000539132		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
In-frame	ENST00000568685	ENST00000262053		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
5CDS-5UTR	ENST00000568685	ENST00000539132		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
intron-3CDS	ENST00000474990	ENST00000262053		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
intron-5UTR	ENST00000474990	ENST00000539132		ChiTaRS3.1			AJ295163	FUS	chr16	31195717	+	ATF1	chr12	51207791	+
3UTR-3CDS	ENST00000369817	ENST00000301067		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
3UTR-intron	ENST00000369817	ENST00000549743		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
intron-3CDS	ENST00000479366	ENST00000301067		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
intron-intron	ENST00000479366	ENST00000549743		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
3UTR-3CDS	ENST00000424325	ENST00000301067		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
3UTR-intron	ENST00000424325	ENST00000549743		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
3UTR-3CDS	ENST00000406022	ENST00000301067		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
3UTR-intron	ENST00000406022	ENST00000549743		ChiTaRS3.1			AI698719	RPL10	chrX	153629208	-	KMT2D	chr12	49435187	+
intron-intron	ENST00000360317	ENST00000579433		ChiTaRS3.1			BF373142	GSDMB	chr17	38073415	-	MIR3134	chr9	114820946	+
intron-intron	ENST00000394175	ENST00000579433		ChiTaRS3.1			BF373142	GSDMB	chr17	38073415	-	MIR3134	chr9	114820946	+
intron-intron	ENST00000309481	ENST00000579433		ChiTaRS3.1			BF373142	GSDMB	chr17	38073415	-	MIR3134	chr9	114820946	+
intron-intron	ENST00000520542	ENST00000579433		ChiTaRS3.1			BF373142	GSDMB	chr17	38073415	-	MIR3134	chr9	114820946	+
intron-intron	ENST00000418519	ENST00000579433		ChiTaRS3.1			BF373142	GSDMB	chr17	38073415	-	MIR3134	chr9	114820946	+
intron-intron	ENST00000394179	ENST00000579433		ChiTaRS3.1			BF373142	GSDMB	chr17	38073415	-	MIR3134	chr9	114820946	+
5UTR-5UTR	ENST00000394156	ENST00000332776		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000394156	ENST00000574788		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000394156	ENST00000304328		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000394156	ENST00000250066		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000394156	ENST00000572429		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000332776		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000574788		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000304328		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000250066		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000268603	ENST00000572429		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000332776		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000574788		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000304328		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000250066		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000566827	ENST00000572429		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000569624	ENST00000332776		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000569624	ENST00000574788		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000569624	ENST00000304328		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000569624	ENST00000250066		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
intron-intron	ENST00000569624	ENST00000572429		ChiTaRS3.1			AY380226	CDH11	chr16	65155782	-	USP6	chr17	5033229	+
5CDS-3UTR	ENST00000313833	ENST00000278412		ChiTaRS3.1			AA699458	FBXO34	chr14	55817148	-	SSRP1	chr11	57093836	+
3UTR-3UTR	ENST00000555087	ENST00000278412		ChiTaRS3.1			AA699458	FBXO34	chr14	55817148	-	SSRP1	chr11	57093836	+
5CDS-3UTR	ENST00000440021	ENST00000278412		ChiTaRS3.1			AA699458	FBXO34	chr14	55817148	-	SSRP1	chr11	57093836	+
In-frame	ENST00000534358	ENST00000496455		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000295920		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000476145		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
In-frame	ENST00000389506	ENST00000496455		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000295920		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000476145		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-3CDS	ENST00000354520	ENST00000496455		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000354520	ENST00000295920		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000354520	ENST00000476145		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-3CDS	ENST00000420751	ENST00000496455		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000420751	ENST00000295920		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000420751	ENST00000476145		ChiTaRS3.1			AF297747	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
In-frame	ENST00000586600	ENST00000586600		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
Frame-shit	ENST00000586600	ENST00000221554		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
5CDS-3UTR	ENST00000586600	ENST00000587019		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
Frame-shit	ENST00000221554	ENST00000586600		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
Frame-shit	ENST00000221554	ENST00000221554		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
5CDS-3UTR	ENST00000221554	ENST00000587019		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
3UTR-3CDS	ENST00000587019	ENST00000586600		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
3UTR-3CDS	ENST00000587019	ENST00000221554		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
3UTR-3UTR	ENST00000587019	ENST00000587019		ChiTaRS3.1			BM695352	CCDC130	chr19	13873598	-	CCDC130	chr19	13873672	+
intron-3CDS	ENST00000398944	ENST00000394126		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398944	ENST00000356271		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398944	ENST00000394128		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398944	ENST00000394127		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398944	ENST00000501516		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-intron	ENST00000398944	ENST00000479829		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000380876	ENST00000394126		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000380876	ENST00000356271		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000380876	ENST00000394128		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000380876	ENST00000394127		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000380876	ENST00000501516		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-intron	ENST00000380876	ENST00000479829		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398943	ENST00000394126		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398943	ENST00000356271		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398943	ENST00000394128		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398943	ENST00000394127		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3CDS	ENST00000398943	ENST00000501516		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-intron	ENST00000398943	ENST00000479829		ChiTaRS3.1			BG957436	EIF3CL	chr16	28412550	-	MED24	chr17	38178965	-
intron-3UTR	ENST00000302125	ENST00000252699		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000302125	ENST00000424234		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000302125	ENST00000390009		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000302125	ENST00000497637		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-3UTR	ENST00000412103	ENST00000252699		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000412103	ENST00000424234		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000412103	ENST00000390009		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000412103	ENST00000497637		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-3UTR	ENST00000457570	ENST00000252699		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000457570	ENST00000424234		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000457570	ENST00000390009		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000457570	ENST00000497637		ChiTaRS3.1			BM676806	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
In-frame	ENST00000418458	ENST00000304636		ChiTaRS3.1			CN367458	GNL3	chr3	52727657	+	COL3A1	chr2	189870074	+
5CDS-intron	ENST00000418458	ENST00000317840		ChiTaRS3.1			CN367458	GNL3	chr3	52727657	+	COL3A1	chr2	189870074	+
In-frame	ENST00000394799	ENST00000304636		ChiTaRS3.1			CN367458	GNL3	chr3	52727657	+	COL3A1	chr2	189870074	+
5CDS-intron	ENST00000394799	ENST00000317840		ChiTaRS3.1			CN367458	GNL3	chr3	52727657	+	COL3A1	chr2	189870074	+
intron-3CDS	ENST00000460073	ENST00000304636		ChiTaRS3.1			CN367458	GNL3	chr3	52727657	+	COL3A1	chr2	189870074	+
intron-intron	ENST00000460073	ENST00000317840		ChiTaRS3.1			CN367458	GNL3	chr3	52727657	+	COL3A1	chr2	189870074	+
3UTR-3UTR	ENST00000290551	ENST00000290551		ChiTaRS3.1			AW794369	BTG2	chr1	203278163	-	BTG2	chr1	203277952	+
5UTR-3CDS	ENST00000528838	ENST00000528838		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
5UTR-intron	ENST00000528838	ENST00000400780		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
5UTR-intron	ENST00000528838	ENST00000528842		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-3CDS	ENST00000400780	ENST00000528838		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000400780	ENST00000400780		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000400780	ENST00000528842		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-3CDS	ENST00000528842	ENST00000528838		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000528842	ENST00000400780		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000528842	ENST00000528842		ChiTaRS3.1			AW016463	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000291503	ENST00000355238		ChiTaRS3.1			AW274852	ATP13A1	chr19	19756133	+	SYNCRIP	chr6	86352841	+
intron-5UTR	ENST00000291503	ENST00000369622		ChiTaRS3.1			AW274852	ATP13A1	chr19	19756133	+	SYNCRIP	chr6	86352841	+
intron-intron	ENST00000357324	ENST00000355238		ChiTaRS3.1			AW274852	ATP13A1	chr19	19756133	+	SYNCRIP	chr6	86352841	+
intron-5UTR	ENST00000357324	ENST00000369622		ChiTaRS3.1			AW274852	ATP13A1	chr19	19756133	+	SYNCRIP	chr6	86352841	+
intron-intron	ENST00000496082	ENST00000355238		ChiTaRS3.1			AW274852	ATP13A1	chr19	19756133	+	SYNCRIP	chr6	86352841	+
intron-5UTR	ENST00000496082	ENST00000369622		ChiTaRS3.1			AW274852	ATP13A1	chr19	19756133	+	SYNCRIP	chr6	86352841	+
intron-3UTR	ENST00000380958	ENST00000344041		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000380958	ENST00000475788		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000380958	ENST00000405243		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000380958	ENST00000401957		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000399613	ENST00000344041		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000399613	ENST00000475788		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000399613	ENST00000405243		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000399613	ENST00000401957		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000282391	ENST00000344041		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000282391	ENST00000475788		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000282391	ENST00000405243		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000282391	ENST00000401957		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000483842	ENST00000344041		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000483842	ENST00000475788		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-intron	ENST00000483842	ENST00000405243		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
intron-3UTR	ENST00000483842	ENST00000401957		ChiTaRS3.1			BF910655	PAN3	chr13	28780190	+	RAPGEF5	chr7	22158115	-
Frame-shit	ENST00000252486	ENST00000252486		ChiTaRS3.1			AI680935	APOE	chr19	45411875	-	APOE	chr19	45411053	+
intron-5UTR	ENST00000377795	ENST00000294189		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000377795	ENST00000466397		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000377795	ENST00000479017		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000377795	ENST00000495383		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000377795	ENST00000475248		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000377795	ENST00000481629		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-5UTR	ENST00000353334	ENST00000294189		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000353334	ENST00000466397		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000353334	ENST00000479017		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000353334	ENST00000495383		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000353334	ENST00000475248		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000353334	ENST00000481629		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-5UTR	ENST00000524315	ENST00000294189		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000524315	ENST00000466397		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000524315	ENST00000479017		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000524315	ENST00000495383		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000524315	ENST00000475248		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000524315	ENST00000481629		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-5UTR	ENST00000009530	ENST00000294189		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000009530	ENST00000466397		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000009530	ENST00000479017		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000009530	ENST00000495383		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000009530	ENST00000475248		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-intron	ENST00000009530	ENST00000481629		ChiTaRS3.1			AW860778	CD74	chr5	149786889	+	RPL29	chr3	52029930	-
intron-3UTR	ENST00000368465	ENST00000320634		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000368465	ENST00000550890		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000368463	ENST00000320634		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000368463	ENST00000550890		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000539880	ENST00000320634		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000539880	ENST00000550890		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000542459	ENST00000320634		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000542459	ENST00000550890		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000368460	ENST00000320634		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000368460	ENST00000550890		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000498553	ENST00000320634		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3UTR	ENST00000498553	ENST00000550890		ChiTaRS3.1			DR978508	PBXIP1	chr1	154918626	+	FAIM2	chr12	50264243	-
intron-3CDS	ENST00000367334	ENST00000401073		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367334	ENST00000373481		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367334	ENST00000294521		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367334	ENST00000373480		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367333	ENST00000401073		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367333	ENST00000373481		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367333	ENST00000294521		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367333	ENST00000373480		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000472411	ENST00000401073		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000472411	ENST00000373481		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000472411	ENST00000294521		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000472411	ENST00000373480		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367330	ENST00000401073		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367330	ENST00000373481		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367330	ENST00000294521		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367330	ENST00000373480		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367332	ENST00000401073		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000367332	ENST00000373481		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367332	ENST00000294521		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000367332	ENST00000373480		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000485839	ENST00000401073		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-3CDS	ENST00000485839	ENST00000373481		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000485839	ENST00000294521		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
intron-intron	ENST00000485839	ENST00000373480		ChiTaRS3.1			BE066321	TMEM9	chr1	201104834	-	KIAA1522	chr1	33237675	+
5CDS-intron	ENST00000391976	ENST00000217246		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391976	ENST00000310348		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391976	ENST00000464883		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391976	ENST00000402914		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391976	ENST00000378058		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391976	ENST00000407045		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000310931	ENST00000217246		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000310931	ENST00000310348		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000310931	ENST00000464883		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000310931	ENST00000402914		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000310931	ENST00000378058		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000310931	ENST00000407045		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391975	ENST00000217246		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391975	ENST00000310348		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391975	ENST00000464883		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391975	ENST00000402914		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391975	ENST00000378058		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000391975	ENST00000407045		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000427183	ENST00000217246		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000427183	ENST00000310348		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000427183	ENST00000464883		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000427183	ENST00000402914		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000427183	ENST00000378058		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
5CDS-intron	ENST00000427183	ENST00000407045		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000476807	ENST00000217246		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000476807	ENST00000310348		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000476807	ENST00000464883		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000476807	ENST00000402914		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000476807	ENST00000378058		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000476807	ENST00000407045		ChiTaRS3.1			BG984017	HDLBP	chr2	242194464	-	MACROD2	chr20	15645698	+
intron-intron	ENST00000520539	ENST00000520539		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000520539	ENST00000220959		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000520539	ENST00000518205		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000520539	ENST00000521922		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000520539	ENST00000519528		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000220959	ENST00000520539		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000220959	ENST00000220959		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000220959	ENST00000518205		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000220959	ENST00000521922		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000220959	ENST00000519528		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000518205	ENST00000520539		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000518205	ENST00000220959		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000518205	ENST00000518205		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000518205	ENST00000521922		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000518205	ENST00000519528		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000521922	ENST00000520539		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000521922	ENST00000220959		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000521922	ENST00000518205		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000521922	ENST00000521922		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000521922	ENST00000519528		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000519528	ENST00000520539		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000519528	ENST00000220959		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000519528	ENST00000518205		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000519528	ENST00000521922		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
intron-intron	ENST00000519528	ENST00000519528		ChiTaRS3.1			BF154933	UBR5	chr8	103373855	+	UBR5	chr8	103372297	+
In-frame	ENST00000591462	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000591462	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000591462	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000591462	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000591462	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000591462	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
5CDS-intron	ENST00000591462	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000252455	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000252455	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000252455	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000252455	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000252455	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000252455	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
5CDS-intron	ENST00000252455	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000412601	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000412601	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000412601	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000412601	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000412601	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000412601	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
5CDS-intron	ENST00000412601	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000592741	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000592741	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000592741	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000592741	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000592741	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000592741	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
5CDS-intron	ENST00000592741	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000587327	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000587327	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000587327	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000587327	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000587327	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000587327	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
5CDS-intron	ENST00000587327	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000589838	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000589838	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000589838	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000589838	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000589838	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
In-frame	ENST00000589838	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
5CDS-intron	ENST00000589838	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000591510	ENST00000591462		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000591510	ENST00000252455		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000591510	ENST00000412601		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000591510	ENST00000592741		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000591510	ENST00000587327		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000591510	ENST00000589838		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-intron	ENST00000591510	ENST00000591510		ChiTaRS3.1			BF746637	PRKCSH	chr19	11560161	+	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000368533	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368533	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368533	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368533	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000368533	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000469717	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000330188	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000341485	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000341372	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000328159	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000271850	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000302206	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000368531	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000323144	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000392302		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000368196		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000524377		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000358660		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000368530	ENST00000531606		ChiTaRS3.1			M55337	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
3UTR-3UTR	ENST00000589123	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000589123	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000589123	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-intron	ENST00000589123	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000589123	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000589123	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000589123	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-intron	ENST00000589123	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000346156	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000346156	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000346156	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-intron	ENST00000346156	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000346156	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000346156	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000346156	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-intron	ENST00000346156	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000395111	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000395111	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000395111	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-intron	ENST00000395111	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000395111	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000395111	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-3UTR	ENST00000395111	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
3UTR-intron	ENST00000395111	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000586919	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000586919	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000586919	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000586919	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000586919	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000586919	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000586919	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000586919	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000341919	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000341919	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000341919	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000341919	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000341919	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000341919	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000341919	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000341919	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000590282	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000590282	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000590282	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000590282	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000590282	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000590282	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000590282	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000590282	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000443272	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000443272	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000443272	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000443272	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000443272	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000443272	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000443272	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000443272	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000588839	ENST00000589123		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000588839	ENST00000346156		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000588839	ENST00000395111		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000588839	ENST00000586919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000588839	ENST00000341919		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000588839	ENST00000590282		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-3UTR	ENST00000588839	ENST00000443272		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000588839	ENST00000588839		ChiTaRS3.1			BM459714	NFIC	chr19	3463070	-	NFIC	chr19	3462850	+
intron-intron	ENST00000423245	ENST00000582520		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000423245	ENST00000269321		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000423245	ENST00000400721		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000423245	ENST00000584461		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000423245	ENST00000541078		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000423245	ENST00000580685		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000423245	ENST00000581876		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000317905	ENST00000582520		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000317905	ENST00000269321		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000317905	ENST00000400721		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000317905	ENST00000584461		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000317905	ENST00000541078		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000317905	ENST00000580685		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000317905	ENST00000581876		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000420326	ENST00000582520		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000420326	ENST00000269321		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000420326	ENST00000400721		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000420326	ENST00000584461		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000420326	ENST00000541078		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000420326	ENST00000580685		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000420326	ENST00000581876		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000340830	ENST00000582520		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000340830	ENST00000269321		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000340830	ENST00000400721		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000340830	ENST00000584461		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000340830	ENST00000541078		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000340830	ENST00000580685		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000340830	ENST00000581876		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000584999	ENST00000582520		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000584999	ENST00000269321		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000584999	ENST00000400721		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000584999	ENST00000584461		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000584999	ENST00000541078		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000584999	ENST00000580685		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000584999	ENST00000581876		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000443199	ENST00000582520		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000443199	ENST00000269321		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000443199	ENST00000400721		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-intron	ENST00000443199	ENST00000584461		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000443199	ENST00000541078		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000443199	ENST00000580685		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
intron-3UTR	ENST00000443199	ENST00000581876		ChiTaRS3.1			AA434220	RECQL5	chr17	73627279	-	ARHGDIA	chr17	79826673	-
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM771447	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM771447	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM771447	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM771447	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
In-frame	ENST00000264158	ENST00000264158		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
In-frame	ENST00000264158	ENST00000539493		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
In-frame	ENST00000264158	ENST00000442034		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-3UTR	ENST00000264158	ENST00000487003		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-intron	ENST00000264158	ENST00000425393		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
Frame-shit	ENST00000539493	ENST00000264158		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
Frame-shit	ENST00000539493	ENST00000539493		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
Frame-shit	ENST00000539493	ENST00000442034		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-3UTR	ENST00000539493	ENST00000487003		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-intron	ENST00000539493	ENST00000425393		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
In-frame	ENST00000442034	ENST00000264158		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
In-frame	ENST00000442034	ENST00000539493		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
In-frame	ENST00000442034	ENST00000442034		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-3UTR	ENST00000442034	ENST00000487003		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-intron	ENST00000442034	ENST00000425393		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
3UTR-3CDS	ENST00000487003	ENST00000264158		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
3UTR-3CDS	ENST00000487003	ENST00000539493		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
3UTR-3CDS	ENST00000487003	ENST00000442034		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
3UTR-3UTR	ENST00000487003	ENST00000487003		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
3UTR-intron	ENST00000487003	ENST00000425393		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
intron-3CDS	ENST00000425393	ENST00000264158		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
intron-3CDS	ENST00000425393	ENST00000539493		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
intron-3CDS	ENST00000425393	ENST00000442034		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
intron-3UTR	ENST00000425393	ENST00000487003		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
intron-intron	ENST00000425393	ENST00000425393		ChiTaRS3.1			AW889018	RAB3GAP1	chr2	135926247	-	RAB3GAP1	chr2	135922210	+
5CDS-intron	ENST00000297268	ENST00000379339		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000448924		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000294576		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000421241		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000482816		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000437760		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000379320		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
5CDS-intron	ENST00000297268	ENST00000379319		ChiTaRS3.1			BE928186	COL1A2	chr7	94056572	+	C1orf159	chr1	1044385	-
intron-3CDS	ENST00000409469	ENST00000409469		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000409469	ENST00000602748		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000409469	ENST00000325222		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000602748	ENST00000409469		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000602748	ENST00000602748		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000602748	ENST00000325222		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000325222	ENST00000409469		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000325222	ENST00000602748		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-3CDS	ENST00000325222	ENST00000325222		ChiTaRS3.1			BE168218	CUL1	chr7	148484065	+	CUL1	chr7	148484150	-
intron-intron	ENST00000500447	ENST00000500447		ChiTaRS3.1			BE833199	MIR210HG	chr11	567181	-	MIR210HG	chr11	567799	-
Frame-shit	ENST00000413852	ENST00000413852		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000413852	ENST00000002829		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000413852	ENST00000434342		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000002829	ENST00000413852		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000002829	ENST00000002829		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000002829	ENST00000434342		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000434342	ENST00000413852		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000434342	ENST00000002829		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
Frame-shit	ENST00000434342	ENST00000434342		ChiTaRS3.1			BP320610	SEMA3F	chr3	50223336	+	SEMA3F	chr3	50211338	+
intron-3CDS	ENST00000369026	ENST00000389266		ChiTaRS3.1			AI962389	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000464132	ENST00000389266		ChiTaRS3.1			AI962389	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000307940	ENST00000389266		ChiTaRS3.1			AI962389	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-intron	ENST00000322723	ENST00000541428		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000379454		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000523897		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000522919		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000356457		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000518068		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000517903		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000445642		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000517847		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000522835		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000517856		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000389204		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000522603		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000379449		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
intron-intron	ENST00000322723	ENST00000517661		ChiTaRS3.1			BI005871	NCL	chr2	232327939	+	ASPH	chr8	62559309	+
In-frame	ENST00000304636	ENST00000258711		ChiTaRS3.1			CF127449	COL3A1	chr2	189870167	+	CHST12	chr7	2472625	+
intron-3CDS	ENST00000317840	ENST00000258711		ChiTaRS3.1			CF127449	COL3A1	chr2	189870167	+	CHST12	chr7	2472625	+
intron-intron	ENST00000324771	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000324771	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000324771	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000324771	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000324771	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000324771	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000324771	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000324771	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000418800	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000418800	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000418800	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000418800	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000418800	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000418800	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000418800	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454612	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454612	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454612	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454612	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454612	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454612	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454612	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376569	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376569	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376569	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376569	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376569	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376569	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376569	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000446312	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000446312	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000446312	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000446312	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000446312	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000446312	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000446312	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376575	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376575	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376575	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376575	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376575	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376575	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376575	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376570	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376570	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376570	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376570	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376570	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376570	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376570	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376568	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376568	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376568	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376568	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376568	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376568	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376568	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000452441	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000452441	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000452441	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000452441	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000452441	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000452441	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000452441	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508312	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508312	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508312	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508312	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508312	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508312	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508312	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376567	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376567	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376567	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376567	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376567	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000376567	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000376567	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000513240	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000513240	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000513240	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000513240	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000513240	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000513240	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000513240	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508472	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508472	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508472	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508472	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508472	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000508472	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000508472	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000361741	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000361741	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000361741	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000361741	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000361741	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000361741	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000361741	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000434428	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000434428	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000434428	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000434428	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000434428	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000434428	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000434428	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000483193	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000483193	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000483193	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000483193	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000483193	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000483193	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000483193	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000383377	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000383377	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000383377	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000383377	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000383377	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000383377	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000383377	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400414	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400414	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400414	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400414	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400414	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400414	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400414	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000259875	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000259875	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000259875	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000259875	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000259875	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000259875	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000259875	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552721	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552721	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552721	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552721	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552721	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552721	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552721	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000553015	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000553015	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000553015	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000553015	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000553015	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000553015	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000553015	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000468225	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000468225	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000468225	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000468225	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000468225	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000468225	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000468225	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400411	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400411	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400411	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400411	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400411	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400411	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400411	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400410	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400410	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400410	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400410	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400410	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000400410	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000400410	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000412329	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000412329	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000412329	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000412329	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000412329	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000412329	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000412329	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000449518	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000449518	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000449518	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000449518	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000449518	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000449518	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000449518	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000427053	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000427053	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000427053	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000427053	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000427053	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000427053	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000427053	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548962	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548962	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548962	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548962	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548962	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548962	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548962	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548133	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548133	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548133	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548133	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548133	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548133	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548133	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000462241	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000462241	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000462241	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000462241	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000462241	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000462241	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000462241	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000415092	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000415092	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000415092	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000415092	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000415092	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000415092	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000415092	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000453510	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000453510	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000453510	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000453510	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000453510	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000453510	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000453510	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550666	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550666	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550666	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550666	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550666	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550666	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550666	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000488414	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000488414	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000488414	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000488414	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000488414	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000488414	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000488414	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000422628	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000422628	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000422628	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000422628	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000422628	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000422628	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000422628	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400492	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400492	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400492	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400492	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400492	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400492	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400492	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400491	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400491	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400491	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400491	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400491	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400491	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400491	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400489	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400489	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400489	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400489	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400489	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400489	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400489	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000549026	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000549026	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000549026	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000549026	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000549026	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000549026	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000549026	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000550395	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000550395	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000550395	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000550395	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000550395	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000550395	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000550395	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000490712	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000490712	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000490712	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000490712	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000490712	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-3UTR	ENST00000490712	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
3UTR-intron	ENST00000490712	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400488	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400488	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400488	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400488	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400488	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400488	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400488	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400486	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400486	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400486	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400486	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400486	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000400486	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000400486	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000552434	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000552434	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000552434	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000552434	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000552434	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-3UTR	ENST00000552434	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
5CDS-intron	ENST00000552434	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000430933	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000430933	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000430933	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000430933	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000430933	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000430933	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000430933	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000429699	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000429699	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000429699	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000429699	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000429699	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000429699	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000429699	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000421229	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000421229	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000421229	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000421229	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000421229	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000421229	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000421229	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550384	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550384	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550384	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550384	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550384	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000550384	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000550384	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552068	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552068	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552068	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552068	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552068	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000552068	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000552068	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000487780	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000487780	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000487780	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000487780	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000487780	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000487780	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000487780	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454774	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454774	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454774	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454774	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454774	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000454774	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000454774	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000419412	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000419412	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000419412	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000419412	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000419412	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000419412	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000419412	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000324771		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000418800		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000454612		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000376569		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000446312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000376575		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000376570		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000376568		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000452441		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000508312		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000376567		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000513240		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000508472		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000361741		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000434428		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000483193		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000383377		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000400414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000259875		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000552721		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000553015		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000468225		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000400411		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000400410		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000412329		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000449518		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000427053		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000548962		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000548133		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000462241		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000415092		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000453510		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000550666		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000488414		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000422628		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000400492		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000400491		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000400489		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548693	ENST00000549026		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548693	ENST00000550395		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548693	ENST00000490712		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548693	ENST00000400488		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548693	ENST00000400486		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-3UTR	ENST00000548693	ENST00000552434		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000430933		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000429699		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000421229		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000550384		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000552068		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000487780		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000454774		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000419412		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-intron	ENST00000548693	ENST00000548693		ChiTaRS3.1			AA862202	DDR1	chr6	2155377	-	DDR1	chr6	2154126	+
intron-5UTR	ENST00000256062	ENST00000373043		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000256062	ENST00000419397		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000256062	ENST00000468084		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000256062	ENST00000373042		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000256062	ENST00000446260		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000551659	ENST00000373043		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000551659	ENST00000419397		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000551659	ENST00000468084		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000551659	ENST00000373042		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000551659	ENST00000446260		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000552618	ENST00000373043		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000552618	ENST00000419397		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000552618	ENST00000468084		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000552618	ENST00000373042		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000552618	ENST00000446260		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000319685	ENST00000373043		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000319685	ENST00000419397		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000319685	ENST00000468084		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000319685	ENST00000373042		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000319685	ENST00000446260		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000539277	ENST00000373043		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000539277	ENST00000419397		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000539277	ENST00000468084		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000539277	ENST00000373042		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000539277	ENST00000446260		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000381224	ENST00000373043		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000381224	ENST00000419397		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000381224	ENST00000468084		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-5UTR	ENST00000381224	ENST00000373042		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000381224	ENST00000446260		ChiTaRS3.1			BE671342	TMTC1	chr12	29920888	-	C1orf122	chr1	38273950	+
intron-intron	ENST00000585605	ENST00000400959		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000367025		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000367026		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000367024		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000010338		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000367023		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000477431		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000585605	ENST00000467830		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000400959		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000367025		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000367026		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000367024		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000010338		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000367023		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000477431		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587950	ENST00000467830		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000400959		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000367025		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000367026		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000367024		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000010338		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000367023		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000477431		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000309324	ENST00000467830		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000400959		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000367025		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000367026		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000367024		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000010338		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000367023		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000477431		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000590389	ENST00000467830		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000400959		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000367025		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000367026		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000367024		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000010338		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000367023		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000477431		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-intron	ENST00000587589	ENST00000467830		ChiTaRS3.1			BI011765	C19orf70	chr19	5680088	-	TRAF3IP3	chr1	209952705	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			BF801948	EEF2	chr19	3978117	-	EEF2	chr19	3979344	+
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			BF801948	EEF2	chr19	3978117	-	EEF2	chr19	3979344	+
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			BF801948	EEF2	chr19	3978117	-	EEF2	chr19	3979344	+
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			BF801948	EEF2	chr19	3978117	-	EEF2	chr19	3979344	+
In-frame	ENST00000295598	ENST00000295598		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
In-frame	ENST00000295598	ENST00000537345		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
5CDS-5UTR	ENST00000295598	ENST00000369496		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
5CDS-intron	ENST00000295598	ENST00000491156		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
In-frame	ENST00000537345	ENST00000295598		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
In-frame	ENST00000537345	ENST00000537345		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
5CDS-5UTR	ENST00000537345	ENST00000369496		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
5CDS-intron	ENST00000537345	ENST00000491156		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
In-frame	ENST00000369496	ENST00000295598		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
In-frame	ENST00000369496	ENST00000537345		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
5CDS-5UTR	ENST00000369496	ENST00000369496		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
5CDS-intron	ENST00000369496	ENST00000491156		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
3UTR-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
3UTR-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
3UTR-5UTR	ENST00000491156	ENST00000369496		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
3UTR-intron	ENST00000491156	ENST00000491156		ChiTaRS3.1			BQ338264	ATP1A1	chr1	116932165	+	ATP1A1	chr1	116926658	+
intron-3CDS	ENST00000308158	ENST00000415930		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000308158	ENST00000356487		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000308158	ENST00000586425		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000481811	ENST00000415930		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000481811	ENST00000356487		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000481811	ENST00000586425		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000476170	ENST00000415930		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000476170	ENST00000356487		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
intron-3CDS	ENST00000476170	ENST00000586425		ChiTaRS3.1			AW369844	PHYKPL	chr5	177648114	+	GPI	chr19	34859538	+
5CDS-5UTR	ENST00000265069	ENST00000544935		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
5CDS-5UTR	ENST00000265069	ENST00000537384		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
5CDS-5UTR	ENST00000265069	ENST00000406797		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
5CDS-5UTR	ENST00000265069	ENST00000403562		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
5CDS-5UTR	ENST00000265069	ENST00000360274		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
5CDS-5UTR	ENST00000265069	ENST00000488474		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
intron-5UTR	ENST00000510369	ENST00000544935		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
intron-5UTR	ENST00000510369	ENST00000537384		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
intron-5UTR	ENST00000510369	ENST00000406797		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
intron-5UTR	ENST00000510369	ENST00000403562		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
intron-5UTR	ENST00000510369	ENST00000360274		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
intron-5UTR	ENST00000510369	ENST00000488474		ChiTaRS3.1			DA153624	ZFR	chr5	32444334	-	PRKAR1B	chr7	751166	-
Frame-shit	ENST00000332556	ENST00000375608		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000332556	ENST00000442652		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000332556	ENST00000375604		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000332556	ENST00000397030		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000332556	ENST00000535094		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000332556	ENST00000421756		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000332556	ENST00000375601		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000397036		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000434480		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000423482		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000375597		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000397024		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000480321		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000332556	ENST00000397021		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000375608		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000442652		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000375604		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000397030		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000535094		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000421756		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
Frame-shit	ENST00000397181	ENST00000375601		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000397036		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000434480		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000423482		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000375597		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000397024		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000480321		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
5CDS-intron	ENST00000397181	ENST00000397021		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000375608		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000442652		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000375604		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000397030		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000535094		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000421756		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-3CDS	ENST00000471046	ENST00000375601		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000397036		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000434480		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000423482		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000375597		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000397024		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000480321		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
intron-intron	ENST00000471046	ENST00000397021		ChiTaRS3.1			XX000014	LAMP1	chr13	113951812	+	MCF2L	chr13	113718617	+
In-frame	ENST00000534358	ENST00000263253		ChiTaRS3.1			AY187920	KMT2A	chr11	118355690	+	EP300	chr22	41547835	+
In-frame	ENST00000389506	ENST00000263253		ChiTaRS3.1			AY187920	KMT2A	chr11	118355690	+	EP300	chr22	41547835	+
intron-3CDS	ENST00000354520	ENST00000263253		ChiTaRS3.1			AY187920	KMT2A	chr11	118355690	+	EP300	chr22	41547835	+
intron-3CDS	ENST00000420751	ENST00000263253		ChiTaRS3.1			AY187920	KMT2A	chr11	118355690	+	EP300	chr22	41547835	+
intron-3CDS	ENST00000309955	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000309955	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000309955	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000309955	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000309955	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000309955	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000443227	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000443227	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000443227	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000443227	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000443227	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000443227	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341222	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341222	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341222	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341222	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341222	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000341222	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000340870	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000340870	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000340870	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000340870	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000340870	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000340870	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000355558	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000355558	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000355558	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000355558	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000355558	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000355558	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341582	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341582	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341582	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341582	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000341582	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000341582	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000342795	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000342795	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000342795	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000342795	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000342795	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000342795	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-3CDS	ENST00000395148	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-3CDS	ENST00000395148	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-3CDS	ENST00000395148	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-3CDS	ENST00000395148	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-3CDS	ENST00000395148	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-intron	ENST00000395148	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000423241	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000423241	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000423241	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000423241	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000423241	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000423241	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000490965	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000490965	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000490965	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000490965	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000490965	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000490965	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000440180	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000440180	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000440180	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000440180	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000440180	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000440180	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000457277	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000457277	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000457277	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000457277	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000457277	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000457277	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000494258	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000494258	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000494258	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000494258	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000494258	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000494258	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000479953	ENST00000415912		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000479953	ENST00000357071		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000479953	ENST00000374893		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000479953	ENST00000436918		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-3CDS	ENST00000479953	ENST00000264205		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
intron-intron	ENST00000479953	ENST00000528294		ChiTaRS3.1			BQ336177	CFLAR	chr2	202002880	+	ECE1	chr1	21551817	+
3UTR-3CDS	ENST00000378887	ENST00000377869		ChiTaRS3.1			BI002377	SDHAF1	chr19	36486834	-	TG	chr8	133953700	-
3UTR-3CDS	ENST00000378887	ENST00000220616		ChiTaRS3.1			BI002377	SDHAF1	chr19	36486834	-	TG	chr8	133953700	-
3UTR-intron	ENST00000378887	ENST00000542445		ChiTaRS3.1			BI002377	SDHAF1	chr19	36486834	-	TG	chr8	133953700	-
3UTR-intron	ENST00000378887	ENST00000519543		ChiTaRS3.1			BI002377	SDHAF1	chr19	36486834	-	TG	chr8	133953700	-
3UTR-intron	ENST00000378887	ENST00000522523		ChiTaRS3.1			BI002377	SDHAF1	chr19	36486834	-	TG	chr8	133953700	-
intron-intron	ENST00000297477	ENST00000297477		ChiTaRS3.1			AI216042	TMEM184A	chr7	1585298	-	TMEM184A	chr7	1588367	-
intron-intron	ENST00000297477	ENST00000449955		ChiTaRS3.1			AI216042	TMEM184A	chr7	1585298	-	TMEM184A	chr7	1588367	-
intron-intron	ENST00000449955	ENST00000297477		ChiTaRS3.1			AI216042	TMEM184A	chr7	1585298	-	TMEM184A	chr7	1588367	-
intron-intron	ENST00000449955	ENST00000449955		ChiTaRS3.1			AI216042	TMEM184A	chr7	1585298	-	TMEM184A	chr7	1588367	-
intron-3CDS	ENST00000234590	ENST00000360467		ChiTaRS3.1			AW362574	ENO1	chr1	8926485	+	COL4A2	chr13	111125307	-
intron-intron	ENST00000234590	ENST00000462309		ChiTaRS3.1			AW362574	ENO1	chr1	8926485	+	COL4A2	chr13	111125307	-
Frame-shit	ENST00000546079	ENST00000311528		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000546079	ENST00000567815		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000546079	ENST00000452368		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000546079	ENST00000393099		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000541297	ENST00000311528		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000541297	ENST00000567815		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000541297	ENST00000452368		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000541297	ENST00000393099		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000337392	ENST00000311528		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000337392	ENST00000567815		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000337392	ENST00000452368		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
Frame-shit	ENST00000337392	ENST00000393099		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
intron-3CDS	ENST00000589158	ENST00000311528		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
intron-3CDS	ENST00000589158	ENST00000567815		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
intron-3CDS	ENST00000589158	ENST00000452368		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
intron-3CDS	ENST00000589158	ENST00000393099		ChiTaRS3.1			BE933378	CLPTM1	chr19	45494627	+	RPL13	chr16	89628766	+
In-frame	ENST00000462484	ENST00000462484		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000462484	ENST00000334856		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000462484	ENST00000460843		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
5CDS-3UTR	ENST00000462484	ENST00000371394		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000334856	ENST00000462484		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000334856	ENST00000334856		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000334856	ENST00000460843		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
5CDS-3UTR	ENST00000334856	ENST00000371394		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000460843	ENST00000462484		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000460843	ENST00000334856		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
In-frame	ENST00000460843	ENST00000460843		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
5CDS-3UTR	ENST00000460843	ENST00000371394		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
3UTR-3CDS	ENST00000371394	ENST00000462484		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
3UTR-3CDS	ENST00000371394	ENST00000334856		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
3UTR-3CDS	ENST00000371394	ENST00000460843		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
3UTR-3UTR	ENST00000371394	ENST00000371394		ChiTaRS3.1			BF997880	EHMT1	chr9	140611295	-	EHMT1	chr9	140622838	-
intron-intron	ENST00000332509	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000332509	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000332509	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000332509	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000335539	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000335539	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000335539	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000335539	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000402064	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000402064	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000402064	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000402064	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000490473	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000490473	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000490473	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000490473	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000436218	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000436218	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000436218	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000436218	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000447598	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000447598	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000447598	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000447598	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000435484	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000435484	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000435484	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000435484	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000417303	ENST00000353891		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000417303	ENST00000263200		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000417303	ENST00000427926		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
intron-intron	ENST00000417303	ENST00000442042		ChiTaRS3.1			CV375307	PLA2G6	chr22	38560565	-	CLTCL1	chr22	19228368	+
In-frame	ENST00000414242	ENST00000414242		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
In-frame	ENST00000414242	ENST00000361479		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
5CDS-intron	ENST00000414242	ENST00000496525		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
In-frame	ENST00000361479	ENST00000414242		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
In-frame	ENST00000361479	ENST00000361479		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
5CDS-intron	ENST00000361479	ENST00000496525		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
intron-3CDS	ENST00000496525	ENST00000414242		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
intron-3CDS	ENST00000496525	ENST00000361479		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
intron-intron	ENST00000496525	ENST00000496525		ChiTaRS3.1			AI857307	MPHOSPH8	chr13	20220850	-	MPHOSPH8	chr13	20222591	-
intron-intron	ENST00000371837	ENST00000398590		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000371837	ENST00000295900		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000371837	ENST00000487717		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000371837	ENST00000538065		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000371837	ENST00000484332		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000371837	ENST00000488239		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000487618	ENST00000398590		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000487618	ENST00000295900		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000487618	ENST00000487717		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000487618	ENST00000538065		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000487618	ENST00000484332		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000487618	ENST00000488239		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000336233	ENST00000398590		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000336233	ENST00000295900		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000336233	ENST00000487717		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000336233	ENST00000538065		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000336233	ENST00000484332		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000336233	ENST00000488239		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000456827	ENST00000398590		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000456827	ENST00000295900		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000456827	ENST00000487717		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000456827	ENST00000538065		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000456827	ENST00000484332		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-intron	ENST00000456827	ENST00000488239		ChiTaRS3.1			BE815363	LIPA	chr10	91098540	+	ATXN7	chr3	63903916	+
intron-3UTR	ENST00000476258	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000476258	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000476258	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000476258	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000476258	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000476258	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000476258	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000476258	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000476258	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000476258	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000405458	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000405458	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000405458	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000405458	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000405458	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000405458	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000405458	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000405458	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000405458	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000405458	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000409753	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000409753	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000409753	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000409753	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000409753	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000409753	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000409753	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000409753	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000409753	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000409753	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000482348	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000482348	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000482348	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000482348	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000482348	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000482348	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000482348	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000482348	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000482348	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000482348	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000356033	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000356033	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000356033	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000356033	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000356033	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000356033	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000356033	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000356033	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000356033	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000356033	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000470924	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000470924	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000470924	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000470924	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000470924	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000470924	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000470924	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000470924	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000470924	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000470924	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000481647	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000481647	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000481647	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000481647	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000481647	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000481647	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000481647	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000481647	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000481647	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000481647	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000392566	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000392566	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000392566	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000392566	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000392566	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000392566	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000392566	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000392566	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000392566	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000392566	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000581874	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000581874	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000581874	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000581874	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000581874	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000581874	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000581874	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000581874	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000581874	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000581874	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000465454	ENST00000476258		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000465454	ENST00000405458		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000465454	ENST00000409753		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000465454	ENST00000482348		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-3UTR	ENST00000465454	ENST00000356033		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000465454	ENST00000470924		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000465454	ENST00000481647		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000465454	ENST00000392566		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000465454	ENST00000581874		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
intron-intron	ENST00000465454	ENST00000465454		ChiTaRS3.1			CB240950	HN1	chr17	73131441	+	HN1	chr17	73131500	-
3UTR-3UTR	ENST00000482108	ENST00000482108		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
3UTR-intron	ENST00000482108	ENST00000488574		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
3UTR-intron	ENST00000482108	ENST00000465184		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-3UTR	ENST00000488574	ENST00000482108		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000488574	ENST00000488574		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000488574	ENST00000465184		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-3UTR	ENST00000465184	ENST00000482108		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000465184	ENST00000488574		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000465184	ENST00000465184		ChiTaRS3.1			BE178987	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-3UTR	ENST00000260323	ENST00000225964		ChiTaRS3.1			BG993675	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000537900	ENST00000225964		ChiTaRS3.1			BG993675	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000545554	ENST00000225964		ChiTaRS3.1			BG993675	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3UTR	ENST00000539562	ENST00000225964		ChiTaRS3.1			BG993675	UNC13C	chr15	54448151	+	COL1A1	chr17	48261599	+
intron-3CDS	ENST00000258796	ENST00000338450		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000258796	ENST00000333219		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000258796	ENST00000375775		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000258796	ENST00000375774		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-intron	ENST00000258796	ENST00000464141		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000407643	ENST00000338450		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000407643	ENST00000333219		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000407643	ENST00000375775		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000407643	ENST00000375774		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-intron	ENST00000407643	ENST00000464141		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000403167	ENST00000338450		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000403167	ENST00000333219		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000403167	ENST00000375775		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000403167	ENST00000375774		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-intron	ENST00000403167	ENST00000464141		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000477439	ENST00000338450		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000477439	ENST00000333219		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000477439	ENST00000375775		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3CDS	ENST00000477439	ENST00000375774		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-intron	ENST00000477439	ENST00000464141		ChiTaRS3.1			BF757166	TTYH3	chr7	2688659	-	ING1	chr13	111372166	-
intron-3UTR	ENST00000390168	ENST00000225972		ChiTaRS3.1			AI110737	H19	chr11	2018791	-	LRRC59	chr17	48460088	-
intron-intron	ENST00000390168	ENST00000576448		ChiTaRS3.1			AI110737	H19	chr11	2018791	-	LRRC59	chr17	48460088	-
3UTR-intron	ENST00000382448	ENST00000231061		ChiTaRS3.1			AW469613	JMJD7-PLA2G4B	chr15	42140206	-	SPARC	chr5	151055693	+
3UTR-intron	ENST00000382448	ENST00000537849		ChiTaRS3.1			AW469613	JMJD7-PLA2G4B	chr15	42140206	-	SPARC	chr5	151055693	+
intron-intron	ENST00000342159	ENST00000231061		ChiTaRS3.1			AW469613	JMJD7-PLA2G4B	chr15	42140206	-	SPARC	chr5	151055693	+
intron-intron	ENST00000342159	ENST00000537849		ChiTaRS3.1			AW469613	JMJD7-PLA2G4B	chr15	42140206	-	SPARC	chr5	151055693	+
intron-intron	ENST00000476036	ENST00000231061		ChiTaRS3.1			AW469613	JMJD7-PLA2G4B	chr15	42140206	-	SPARC	chr5	151055693	+
intron-intron	ENST00000476036	ENST00000537849		ChiTaRS3.1			AW469613	JMJD7-PLA2G4B	chr15	42140206	-	SPARC	chr5	151055693	+
intron-3CDS	ENST00000368533	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368533	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368533	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368533	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000368533	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000469717	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000469717	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000330188	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000330188	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341485	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000341485	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000341372	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000341372	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000328159	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000328159	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000271850	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000271850	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000302206	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000302206	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368531	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000368531	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000323144	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000323144	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000392302		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000368196		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000524377		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-3CDS	ENST00000368530	ENST00000358660		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
intron-intron	ENST00000368530	ENST00000531606		ChiTaRS3.1			M55336	TPM3	chr1	154155584	-	NTRK1	chr1	156845339	+
Frame-shit	ENST00000215071	ENST00000391976		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000215071	ENST00000310931		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000215071	ENST00000391975		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000215071	ENST00000427183		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5CDS-intron	ENST00000215071	ENST00000476807		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000602911	ENST00000391976		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000602911	ENST00000310931		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000602911	ENST00000391975		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
Frame-shit	ENST00000602911	ENST00000427183		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5CDS-intron	ENST00000602911	ENST00000476807		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5UTR-3CDS	ENST00000592035	ENST00000391976		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5UTR-3CDS	ENST00000592035	ENST00000310931		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5UTR-3CDS	ENST00000592035	ENST00000391975		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5UTR-3CDS	ENST00000592035	ENST00000427183		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
5UTR-intron	ENST00000592035	ENST00000476807		ChiTaRS3.1			DW427896	PSMD8	chr19	38867047	+	HDLBP	chr2	242196041	-
In-frame	ENST00000304636	ENST00000316403		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000304636	ENST00000546343		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000304636	ENST00000560366		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000304636	ENST00000405140		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000304636	ENST00000523500		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000317840	ENST00000316403		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000317840	ENST00000546343		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000317840	ENST00000560366		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000317840	ENST00000405140		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
In-frame	ENST00000317840	ENST00000523500		ChiTaRS3.1			CN367540	COL3A1	chr2	189876449	+	CLU	chr8	27462642	-
intron-3CDS	ENST00000358901	ENST00000358901		ChiTaRS3.1			AA557923	VCP	chr9	35060350	-	VCP	chr9	35059683	+
Frame-shit	ENST00000310137	ENST00000310137		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000393979		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409372		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000443702		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409738		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000461478		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000393979	ENST00000310137		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000393979		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409372		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000443702		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409738		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000461478		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409372	ENST00000310137		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000393979		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409372		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000443702		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409738		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000461478		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000443702	ENST00000310137		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000393979		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409372		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000443702		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409738		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000461478		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409738	ENST00000310137		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000393979		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409372		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000443702		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409738		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000461478		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000461478	ENST00000310137		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000393979		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409372		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000443702		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409738		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000461478		ChiTaRS3.1			AA427767	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
In-frame	ENST00000534358	ENST00000496455		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000295920		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000476145		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
In-frame	ENST00000389506	ENST00000496455		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000295920		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000476145		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
In-frame	ENST00000354520	ENST00000496455		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000354520	ENST00000295920		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000354520	ENST00000476145		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
3UTR-3CDS	ENST00000420751	ENST00000496455		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
3UTR-intron	ENST00000420751	ENST00000295920		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
3UTR-intron	ENST00000420751	ENST00000476145		ChiTaRS3.1			AF297748	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5UTR-5UTR	ENST00000502976	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000502976	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000502976	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000502976	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000502976	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000422453	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000422453	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000422453	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000422453	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000422453	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000451728	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000451728	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000451728	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000451728	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000451728	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000446936	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000446936	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000446936	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000446936	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000446936	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000500450	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000500450	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000500450	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000500450	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000500450	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000504813	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000504813	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000504813	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000504813	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000504813	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000441626	ENST00000332776		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000441626	ENST00000574788		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000441626	ENST00000304328		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000441626	ENST00000250066		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000441626	ENST00000572429		ChiTaRS3.1			AY624556	CNBP	chr3	128902618	-	USP6	chr17	5033660	+
intron-3CDS	ENST00000359139	ENST00000456435		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000318967		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000435409		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000512605		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000359139	ENST00000476843		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000456435		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000318967		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000435409		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000512605		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395741	ENST00000476843		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000456435		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000318967		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000435409		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000512605		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395744	ENST00000476843		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000456435		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000318967		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000435409		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000512605		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000216061	ENST00000476843		ChiTaRS3.1			BE932672	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000231061	ENST00000231061		ChiTaRS3.1			AA527011	SPARC	chr5	151042720	-	SPARC	chr5	151042811	+
intron-intron	ENST00000231061	ENST00000537849		ChiTaRS3.1			AA527011	SPARC	chr5	151042720	-	SPARC	chr5	151042811	+
intron-3UTR	ENST00000537849	ENST00000231061		ChiTaRS3.1			AA527011	SPARC	chr5	151042720	-	SPARC	chr5	151042811	+
intron-intron	ENST00000537849	ENST00000537849		ChiTaRS3.1			AA527011	SPARC	chr5	151042720	-	SPARC	chr5	151042811	+
intron-3CDS	ENST00000360635	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
intron-5UTR	ENST00000360635	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
intron-intron	ENST00000360635	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-3CDS	ENST00000238091	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-5UTR	ENST00000238091	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-intron	ENST00000238091	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-3CDS	ENST00000355346	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-5UTR	ENST00000355346	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-intron	ENST00000355346	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-3CDS	ENST00000490426	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-5UTR	ENST00000490426	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-intron	ENST00000490426	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
intron-3CDS	ENST00000359712	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
intron-5UTR	ENST00000359712	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
intron-intron	ENST00000359712	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-3CDS	ENST00000488451	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-5UTR	ENST00000488451	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-intron	ENST00000488451	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-3CDS	ENST00000456913	ENST00000238112		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-5UTR	ENST00000456913	ENST00000460593		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
5UTR-intron	ENST00000456913	ENST00000489403		ChiTaRS3.1			DB012789	ITGB1BP1	chr2	9563502	-	CPSF3	chr2	9568892	+
In-frame	ENST00000295598	ENST00000295598		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000295598	ENST00000537345		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000295598	ENST00000369496		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
5CDS-intron	ENST00000295598	ENST00000491156		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000537345	ENST00000295598		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000537345	ENST00000537345		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000537345	ENST00000369496		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
5CDS-intron	ENST00000537345	ENST00000491156		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000369496	ENST00000295598		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000369496	ENST00000537345		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000369496	ENST00000369496		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
5CDS-intron	ENST00000369496	ENST00000491156		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
intron-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
intron-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
intron-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
intron-intron	ENST00000491156	ENST00000491156		ChiTaRS3.1			BE695741	ATP1A1	chr1	116941590	+	ATP1A1	chr1	116941350	-
In-frame	ENST00000324856	ENST00000324856		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
In-frame	ENST00000324856	ENST00000457599		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
5CDS-5UTR	ENST00000324856	ENST00000374152		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
5CDS-intron	ENST00000324856	ENST00000540690		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
In-frame	ENST00000457599	ENST00000324856		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
In-frame	ENST00000457599	ENST00000457599		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
5CDS-5UTR	ENST00000457599	ENST00000374152		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
5CDS-intron	ENST00000457599	ENST00000540690		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
In-frame	ENST00000374152	ENST00000324856		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
In-frame	ENST00000374152	ENST00000457599		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
5CDS-5UTR	ENST00000374152	ENST00000374152		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
5CDS-intron	ENST00000374152	ENST00000540690		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
intron-3CDS	ENST00000540690	ENST00000324856		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
intron-3CDS	ENST00000540690	ENST00000457599		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
intron-5UTR	ENST00000540690	ENST00000374152		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
intron-intron	ENST00000540690	ENST00000540690		ChiTaRS3.1			BF808164	ARID1A	chr1	27059283	+	ARID1A	chr1	27056142	+
intron-intron	ENST00000265109	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000265109	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000512629	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000428746	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000503673	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000515799	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000506376	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000507276	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000265109		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000512629		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000428746		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000503673		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000515799		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000506376		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000507276		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-intron	ENST00000397449	ENST00000397449		ChiTaRS3.1			AA558122	RAI14	chr5	34793377	-	RAI14	chr5	34796132	-
intron-3CDS	ENST00000537045	ENST00000537045		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000537045	ENST00000263196		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3UTR	ENST00000537045	ENST00000545799		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-intron	ENST00000537045	ENST00000473832		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000263196	ENST00000537045		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000263196	ENST00000263196		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3UTR	ENST00000263196	ENST00000545799		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-intron	ENST00000263196	ENST00000473832		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000545799	ENST00000537045		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000545799	ENST00000263196		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3UTR	ENST00000545799	ENST00000545799		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-intron	ENST00000545799	ENST00000473832		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000473832	ENST00000537045		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3CDS	ENST00000473832	ENST00000263196		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3UTR	ENST00000473832	ENST00000545799		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-intron	ENST00000473832	ENST00000473832		ChiTaRS3.1			AI751109	DGCR2	chr22	19050749	+	DGCR2	chr22	19036061	-
intron-3UTR	ENST00000396024	ENST00000392653		ChiTaRS3.1			BE181532	ANXA2	chr15	60657832	+	SPRR2A	chr1	153028861	+
intron-3UTR	ENST00000451270	ENST00000392653		ChiTaRS3.1			BE181532	ANXA2	chr15	60657832	+	SPRR2A	chr1	153028861	+
intron-3UTR	ENST00000332680	ENST00000392653		ChiTaRS3.1			BE181532	ANXA2	chr15	60657832	+	SPRR2A	chr1	153028861	+
intron-3UTR	ENST00000421017	ENST00000392653		ChiTaRS3.1			BE181532	ANXA2	chr15	60657832	+	SPRR2A	chr1	153028861	+
intron-3UTR	ENST00000557937	ENST00000392653		ChiTaRS3.1			BE181532	ANXA2	chr15	60657832	+	SPRR2A	chr1	153028861	+
intron-3CDS	ENST00000361156	ENST00000361156		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361156	ENST00000347108		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361156	ENST00000361396		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361156	ENST00000376829		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-intron	ENST00000361156	ENST00000466027		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000347108	ENST00000361156		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000347108	ENST00000347108		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000347108	ENST00000361396		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000347108	ENST00000376829		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-intron	ENST00000347108	ENST00000466027		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361396	ENST00000361156		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361396	ENST00000347108		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361396	ENST00000361396		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000361396	ENST00000376829		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-intron	ENST00000361396	ENST00000466027		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000376829	ENST00000361156		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000376829	ENST00000347108		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000376829	ENST00000361396		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000376829	ENST00000376829		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-intron	ENST00000376829	ENST00000466027		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000466027	ENST00000361156		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000466027	ENST00000347108		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000466027	ENST00000361396		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-3CDS	ENST00000466027	ENST00000376829		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-intron	ENST00000466027	ENST00000466027		ChiTaRS3.1			CB851408	DZIP1	chr13	96242573	+	DZIP1	chr13	96242103	-
intron-intron	ENST00000336615	ENST00000336615		ChiTaRS3.1			BG960633	PNPLA2	chr11	820922	+	PNPLA2	chr11	821042	-
3UTR-3UTR	ENST00000348261	ENST00000348261		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3UTR	ENST00000348261	ENST00000358590		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-intron	ENST00000348261	ENST00000565831		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3UTR	ENST00000358590	ENST00000348261		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3UTR	ENST00000358590	ENST00000358590		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-intron	ENST00000358590	ENST00000565831		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-3UTR	ENST00000565831	ENST00000348261		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-3UTR	ENST00000565831	ENST00000358590		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-intron	ENST00000565831	ENST00000565831		ChiTaRS3.1			AW845336	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-intron	ENST00000375784	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375784	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375784	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375784	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375784	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375784	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375779	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375779	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375779	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375779	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375779	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000375780	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375780	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375780	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375780	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000375780	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000395892	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000395892	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000395892	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000395892	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000395892	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000457485	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000457485	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000457485	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000457485	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000457485	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423804	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423804	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423804	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423804	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423804	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447369	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447369	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447369	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447369	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447369	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000447338	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447338	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447338	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447338	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000447338	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000422167	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000422167	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000422167	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000422167	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000422167	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438708	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438708	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438708	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438708	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438708	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000431921	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000431921	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000431921	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000431921	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000431921	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000415179	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000415179	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000415179	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000415179	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000415179	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000418285	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000418285	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000418285	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000418285	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000418285	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423055	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423055	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423055	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423055	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423055	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000442045	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000442045	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000442045	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000442045	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000442045	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000435242	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000435242	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000435242	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000435242	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000435242	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400052	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400052	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400052	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400052	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400052	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383404	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383404	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383404	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383404	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383404	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000383405	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383405	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383405	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383405	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000383405	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000400058	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400058	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400058	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400058	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000400058	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000456863	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000456863	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000456863	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000456863	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000456863	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000434202	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000434202	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000434202	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000434202	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000434202	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000420458	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000420458	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000420458	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000420458	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000420458	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000433916	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000433916	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000433916	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000433916	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000433916	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000425464	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000425464	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000425464	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000425464	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000425464	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000423143	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423143	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423143	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423143	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000423143	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000438750	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438750	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438750	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438750	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000438750	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000375784		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000375779		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000375780		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000395892		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000457485		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000423804		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000447369		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000447338		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000422167		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000438708		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000431921		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000415179		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000418285		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000423055		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000442045		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000435242		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000400052		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000383404		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000383405		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000400058		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000456863		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000434202		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000420458		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-intron	ENST00000451546	ENST00000433916		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000451546	ENST00000425464		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000451546	ENST00000423143		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000451546	ENST00000438750		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
intron-3UTR	ENST00000451546	ENST00000451546		ChiTaRS3.1			AA587837	CLIC1	chr6	3029247	-	CLIC1	chr6	3029191	+
In-frame	ENST00000358136	ENST00000335272		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000358136	ENST00000320996		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000358136	ENST00000455418		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000356315	ENST00000335272		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000356315	ENST00000320996		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000356315	ENST00000455418		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
3UTR-3CDS	ENST00000496628	ENST00000335272		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
3UTR-3CDS	ENST00000496628	ENST00000320996		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
3UTR-3CDS	ENST00000496628	ENST00000455418		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000543766	ENST00000335272		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000543766	ENST00000320996		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
In-frame	ENST00000543766	ENST00000455418		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
intron-3CDS	ENST00000471923	ENST00000335272		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
intron-3CDS	ENST00000471923	ENST00000320996		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
intron-3CDS	ENST00000471923	ENST00000455418		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
intron-3CDS	ENST00000543710	ENST00000335272		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
intron-3CDS	ENST00000543710	ENST00000320996		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
intron-3CDS	ENST00000543710	ENST00000455418		ChiTaRS3.1			BF741687	VPS13D	chr1	12476754	-	PITPNB	chr22	28254502	-
5CDS-3UTR	ENST00000372530	ENST00000391860		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-3UTR	ENST00000372530	ENST00000321327		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-intron	ENST00000372530	ENST00000525115		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-intron	ENST00000372530	ENST00000530424		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
intron-3UTR	ENST00000443426	ENST00000391860		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
intron-3UTR	ENST00000443426	ENST00000321327		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
intron-intron	ENST00000443426	ENST00000525115		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
intron-intron	ENST00000443426	ENST00000530424		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-3UTR	ENST00000244533	ENST00000391860		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-3UTR	ENST00000244533	ENST00000321327		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-intron	ENST00000244533	ENST00000525115		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
5CDS-intron	ENST00000244533	ENST00000530424		ChiTaRS3.1			BE718029	ABCC10	chr6	43416882	+	PGBD5	chr1	230457694	+
In-frame	ENST00000200457	ENST00000200457		ChiTaRS3.1			BF736578	TRIP6	chr7	100470365	+	TRIP6	chr7	100465180	+
intron-3CDS	ENST00000389243	ENST00000367602		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-intron	ENST00000389243	ENST00000367600		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-3CDS	ENST00000333640	ENST00000367602		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-intron	ENST00000333640	ENST00000367600		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-3CDS	ENST00000550824	ENST00000367602		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-intron	ENST00000550824	ENST00000367600		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-3CDS	ENST00000547854	ENST00000367602		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-intron	ENST00000547854	ENST00000367600		ChiTaRS3.1			BF871819	POU6F1	chr12	51590504	-	QSOX1	chr1	180165956	-
intron-3UTR	ENST00000362227	ENST00000370355		ChiTaRS3.1			DR979294	MIR503HG	chrX	133680167	+	SCD	chr10	102124431	+
5UTR-3CDS	ENST00000342483	ENST00000402714		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-3CDS	ENST00000342483	ENST00000544450		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-3CDS	ENST00000342483	ENST00000392920		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-intron	ENST00000342483	ENST00000555048		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-3CDS	ENST00000543471	ENST00000402714		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-3CDS	ENST00000543471	ENST00000544450		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-3CDS	ENST00000543471	ENST00000392920		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
5UTR-intron	ENST00000543471	ENST00000555048		ChiTaRS3.1			DA949545	ZNF79	chr9	130186906	+	EVL	chr14	100599064	+
In-frame	ENST00000378312	ENST00000532317		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
In-frame	ENST00000378312	ENST00000526033		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
In-frame	ENST00000378312	ENST00000393346		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
5CDS-5UTR	ENST00000378312	ENST00000528398		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
5CDS-5UTR	ENST00000378312	ENST00000356360		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
5CDS-5UTR	ENST00000378312	ENST00000528411		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
In-frame	ENST00000278422	ENST00000532317		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
In-frame	ENST00000278422	ENST00000526033		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
In-frame	ENST00000278422	ENST00000393346		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
5CDS-5UTR	ENST00000278422	ENST00000528398		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
5CDS-5UTR	ENST00000278422	ENST00000356360		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
5CDS-5UTR	ENST00000278422	ENST00000528411		ChiTaRS3.1			DA224788	TMX2	chr11	57505140	+	PICALM	chr11	85742653	-
intron-3CDS	ENST00000381086	ENST00000075120		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-intron	ENST00000381086	ENST00000543435		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-3CDS	ENST00000275521	ENST00000075120		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-intron	ENST00000275521	ENST00000543435		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-3CDS	ENST00000381083	ENST00000075120		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-intron	ENST00000381083	ENST00000543435		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-3CDS	ENST00000465642	ENST00000075120		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-intron	ENST00000465642	ENST00000543435		ChiTaRS3.1			DA576628	IGFBP3	chr7	45960766	-	SLC2A3	chr12	8083114	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BQ371295	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
3UTR-3CDS	ENST00000558401	ENST00000303577		ChiTaRS3.1			AW375764	B2M	chr15	45010026	-	PCBP1	chr2	70315524	+
intron-3CDS	ENST00000559916	ENST00000303577		ChiTaRS3.1			AW375764	B2M	chr15	45010026	-	PCBP1	chr2	70315524	+
intron-3CDS	ENST00000544417	ENST00000303577		ChiTaRS3.1			AW375764	B2M	chr15	45010026	-	PCBP1	chr2	70315524	+
3UTR-3CDS	ENST00000559220	ENST00000303577		ChiTaRS3.1			AW375764	B2M	chr15	45010026	-	PCBP1	chr2	70315524	+
Frame-shit	ENST00000319715	ENST00000367607		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
5CDS-intron	ENST00000319715	ENST00000490141		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
intron-3CDS	ENST00000452655	ENST00000367607		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
intron-intron	ENST00000452655	ENST00000490141		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
intron-3CDS	ENST00000381039	ENST00000367607		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
intron-intron	ENST00000381039	ENST00000490141		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
Frame-shit	ENST00000348022	ENST00000367607		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
5CDS-intron	ENST00000348022	ENST00000490141		ChiTaRS3.1			BG015559	RBBP6	chr16	24578642	+	CEP350	chr1	179983407	-
3UTR-3UTR	ENST00000588030	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000588030	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000588030	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000588030	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000588030	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000588030	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000588030	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000588030	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589660	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589660	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588090	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588090	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000591935	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000591935	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000589710	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000589710	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000588230	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000588230	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000413636	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000413636	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000586472	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000586472	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589686	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589686	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000444172	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000444172	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587323	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587323	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-intron	ENST00000320936	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
3UTR-3UTR	ENST00000320936	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000587896	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000587896	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000589235	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000589235	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000585630	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000585630	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000586773	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000586773	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000588030		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000589660		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000588090		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000591935		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000589710		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000588230		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000413636		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000586472		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000589686		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000444172		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000587323		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000320936		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000587896		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000589235		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000585630		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-intron	ENST00000590188	ENST00000586773		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
intron-3UTR	ENST00000590188	ENST00000590188		ChiTaRS3.1			CN478954	CIRBP	chr19	1273098	-	CIRBP	chr19	1272962	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AF487522	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AF487522	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AF487522	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
3UTR-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AF487522	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000298248	ENST00000576409		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000298248	ENST00000574428		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000298248	ENST00000371937		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000298248	ENST00000542495		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000298248	ENST00000329231		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000298248	ENST00000532925		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000298248	ENST00000525633		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000382812	ENST00000576409		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000382812	ENST00000574428		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000382812	ENST00000371937		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000382812	ENST00000542495		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000382812	ENST00000329231		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000382812	ENST00000532925		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000382812	ENST00000525633		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000480748	ENST00000576409		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000480748	ENST00000574428		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3CDS	ENST00000480748	ENST00000371937		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000480748	ENST00000542495		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000480748	ENST00000329231		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000480748	ENST00000532925		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-intron	ENST00000480748	ENST00000525633		ChiTaRS3.1			BP276779	CRYL1	chr13	21006251	-	ATPAF1	chr1	47133965	-
intron-3UTR	ENST00000273854	ENST00000534336		ChiTaRS3.1			DW462886	EPHA5	chr4	66439426	+	MALAT1	chr11	65267162	+
intron-3UTR	ENST00000432638	ENST00000534336		ChiTaRS3.1			DW462886	EPHA5	chr4	66439426	+	MALAT1	chr11	65267162	+
intron-3UTR	ENST00000354839	ENST00000534336		ChiTaRS3.1			DW462886	EPHA5	chr4	66439426	+	MALAT1	chr11	65267162	+
intron-3UTR	ENST00000511294	ENST00000534336		ChiTaRS3.1			DW462886	EPHA5	chr4	66439426	+	MALAT1	chr11	65267162	+
Frame-shit	ENST00000578921	ENST00000578921		ChiTaRS3.1			AA854225	RAB31	chr18	9859247	-	RAB31	chr18	9775274	+
5CDS-intron	ENST00000578921	ENST00000577284		ChiTaRS3.1			AA854225	RAB31	chr18	9859247	-	RAB31	chr18	9775274	+
3UTR-3CDS	ENST00000577284	ENST00000578921		ChiTaRS3.1			AA854225	RAB31	chr18	9859247	-	RAB31	chr18	9775274	+
3UTR-intron	ENST00000577284	ENST00000577284		ChiTaRS3.1			AA854225	RAB31	chr18	9859247	-	RAB31	chr18	9775274	+
intron-3CDS	ENST00000253408	ENST00000253408		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000253408	ENST00000588735		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000253408	ENST00000435360		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000253408	ENST00000586793		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000253408	ENST00000591327		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-3CDS	ENST00000588735	ENST00000253408		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000588735	ENST00000588735		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000588735	ENST00000435360		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000588735	ENST00000586793		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000588735	ENST00000591327		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-3CDS	ENST00000435360	ENST00000253408		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000435360	ENST00000588735		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000435360	ENST00000435360		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000435360	ENST00000586793		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000435360	ENST00000591327		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-3CDS	ENST00000586793	ENST00000253408		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000586793	ENST00000588735		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000586793	ENST00000435360		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000586793	ENST00000586793		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000586793	ENST00000591327		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-3CDS	ENST00000591327	ENST00000253408		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000591327	ENST00000588735		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000591327	ENST00000435360		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000591327	ENST00000586793		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
intron-intron	ENST00000591327	ENST00000591327		ChiTaRS3.1			BQ343685	GFAP	chr17	42992741	+	GFAP	chr17	42991408	+
Frame-shit	ENST00000373823	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373823	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373823	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373823	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373808	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373808	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373808	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000436847	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000436847	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000436847	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000449733	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000449733	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000449733	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000412819	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000412819	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000412819	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000394353	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000394353	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000394353	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000341272	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000341272	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000341272	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000545652	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000545652	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000545652	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373818	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373818	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373818	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000485767	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000485767	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000485767	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373807	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373807	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373807	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000373823		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000373808		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000436847		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000449733		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000412819		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000394353		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000341272		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000545652		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000373818		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373806	ENST00000485767		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373806	ENST00000373807		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373806	ENST00000373806		ChiTaRS3.1			BF896320	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835135	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-3CDS	ENST00000368868	ENST00000368868		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000368868	ENST00000447402		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000368868	ENST00000426705		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000368868	ENST00000435071		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-intron	ENST00000368868	ENST00000473693		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000447402	ENST00000368868		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000447402	ENST00000447402		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000447402	ENST00000426705		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000447402	ENST00000435071		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-intron	ENST00000447402	ENST00000473693		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000426705	ENST00000368868		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000426705	ENST00000447402		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000426705	ENST00000426705		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000426705	ENST00000435071		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-intron	ENST00000426705	ENST00000473693		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000435071	ENST00000368868		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000435071	ENST00000447402		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000435071	ENST00000426705		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000435071	ENST00000435071		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-intron	ENST00000435071	ENST00000473693		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000473693	ENST00000368868		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000473693	ENST00000447402		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000473693	ENST00000426705		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-3CDS	ENST00000473693	ENST00000435071		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
intron-intron	ENST00000473693	ENST00000473693		ChiTaRS3.1			BF751733	SELENBP1	chr1	151337524	+	SELENBP1	chr1	151338069	-
3UTR-3UTR	ENST00000602240	ENST00000602240		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000602240	ENST00000204005		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000602240	ENST00000545697		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000602240	ENST00000308370		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000602240	ENST00000396819		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000602240	ENST00000243562		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000204005	ENST00000602240		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000204005	ENST00000204005		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000204005	ENST00000545697		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000204005	ENST00000308370		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000204005	ENST00000396819		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000204005	ENST00000243562		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000545697	ENST00000602240		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000545697	ENST00000204005		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000545697	ENST00000545697		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000545697	ENST00000308370		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000545697	ENST00000396819		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000545697	ENST00000243562		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000308370	ENST00000602240		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000308370	ENST00000204005		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000308370	ENST00000545697		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000308370	ENST00000308370		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000308370	ENST00000396819		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000308370	ENST00000243562		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000396819	ENST00000602240		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000396819	ENST00000204005		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000396819	ENST00000545697		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000396819	ENST00000308370		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000396819	ENST00000396819		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
5CDS-3UTR	ENST00000396819	ENST00000243562		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000243562	ENST00000602240		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000243562	ENST00000204005		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000243562	ENST00000545697		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000243562	ENST00000308370		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000243562	ENST00000396819		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
3UTR-3UTR	ENST00000243562	ENST00000243562		ChiTaRS3.1			AI952559	LTBP4	chr19	41128872	-	LTBP4	chr19	41129867	+
Frame-shit	ENST00000336967	ENST00000297423		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000336967	ENST00000518074		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000336967	ENST00000541342		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000336967	ENST00000521214		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000336967	ENST00000517693		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000336967	ENST00000518060		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391771	ENST00000297423		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391771	ENST00000518074		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391771	ENST00000541342		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391771	ENST00000521214		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391771	ENST00000517693		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391771	ENST00000518060		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391770	ENST00000297423		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391770	ENST00000518074		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391770	ENST00000541342		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391770	ENST00000521214		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391770	ENST00000517693		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391770	ENST00000518060		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391769	ENST00000297423		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391769	ENST00000518074		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391769	ENST00000541342		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391769	ENST00000521214		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391769	ENST00000517693		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391769	ENST00000518060		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391768	ENST00000297423		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391768	ENST00000518074		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
Frame-shit	ENST00000391768	ENST00000541342		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-3UTR	ENST00000391768	ENST00000521214		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391768	ENST00000517693		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
5CDS-intron	ENST00000391768	ENST00000518060		ChiTaRS3.1			BI024730	MYADM	chr19	54377459	+	SPIDR	chr8	48511721	-
intron-3UTR	ENST00000390237	ENST00000534336		ChiTaRS3.1			AA903084	IGKC	chr2	89156840	+	MALAT1	chr11	65267432	-
intron-intron	ENST00000400227	ENST00000400227		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400227	ENST00000349736		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400227	ENST00000217244		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400227	ENST00000400217		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000349736	ENST00000400227		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000349736	ENST00000349736		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000349736	ENST00000217244		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000349736	ENST00000400217		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000217244	ENST00000400227		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000217244	ENST00000349736		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000217244	ENST00000217244		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000217244	ENST00000400217		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400217	ENST00000400227		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400217	ENST00000349736		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400217	ENST00000217244		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
intron-intron	ENST00000400217	ENST00000400217		ChiTaRS3.1			AA659846	CSNK2A1	chr20	519670	-	CSNK2A1	chr20	519490	+
5CDS-5UTR	ENST00000534358	ENST00000437099		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000323816		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000432992		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000540214		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000585266		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000580865		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000583882		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000542249		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000396115		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000579158		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000578655		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000437099		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000323816		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000432992		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000540214		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000585266		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000580865		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000583882		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000542249		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000396115		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000579158		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000578655		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000437099		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000323816		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000432992		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000540214		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000585266		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000354520	ENST00000580865		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000354520	ENST00000583882		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000542249		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000396115		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000579158		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000578655		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000437099		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000323816		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000432992		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000540214		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000585266		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-intron	ENST00000420751	ENST00000580865		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-intron	ENST00000420751	ENST00000583882		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000542249		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000396115		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000579158		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000578655		ChiTaRS3.1			AF231995	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
Frame-shit	ENST00000330062	ENST00000330062		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
Frame-shit	ENST00000330062	ENST00000539790		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000330062	ENST00000559482		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000330062	ENST00000540499		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
In-frame	ENST00000539790	ENST00000330062		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
In-frame	ENST00000539790	ENST00000539790		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000539790	ENST00000559482		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000539790	ENST00000540499		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
Frame-shit	ENST00000559482	ENST00000330062		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
Frame-shit	ENST00000559482	ENST00000539790		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000559482	ENST00000559482		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000559482	ENST00000540499		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
Frame-shit	ENST00000540499	ENST00000330062		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
Frame-shit	ENST00000540499	ENST00000539790		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000540499	ENST00000559482		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000540499	ENST00000540499		ChiTaRS3.1			AA091237	IDH2	chr15	90630670	-	IDH2	chr15	90631849	-
5CDS-intron	ENST00000382518	ENST00000382518		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382518	ENST00000009180		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382518	ENST00000382515		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382518	ENST00000481267		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000009180	ENST00000382518		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000009180	ENST00000009180		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000009180	ENST00000382515		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000009180	ENST00000481267		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382515	ENST00000382518		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382515	ENST00000009180		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382515	ENST00000382515		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5CDS-intron	ENST00000382515	ENST00000481267		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
3UTR-intron	ENST00000481267	ENST00000382518		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
3UTR-intron	ENST00000481267	ENST00000009180		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
3UTR-intron	ENST00000481267	ENST00000382515		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
3UTR-intron	ENST00000481267	ENST00000481267		ChiTaRS3.1			AA729962	CD9	chr12	6344412	+	CD9	chr12	6341890	-
5UTR-3UTR	ENST00000361763	ENST00000488996		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-5UTR	ENST00000361763	ENST00000356387		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-5UTR	ENST00000361763	ENST00000478730		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-5UTR	ENST00000361763	ENST00000403646		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-intron	ENST00000361763	ENST00000473939		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-3UTR	ENST00000528600	ENST00000488996		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-5UTR	ENST00000528600	ENST00000356387		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-5UTR	ENST00000528600	ENST00000478730		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-5UTR	ENST00000528600	ENST00000403646		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
5UTR-intron	ENST00000528600	ENST00000473939		ChiTaRS3.1			DB115683	CD3E	chr11	118175657	+	ORAI2	chr7	102074052	+
intron-3CDS	ENST00000371457	ENST00000252486		ChiTaRS3.1			BF887510	PNPLA7	chr9	140375781	+	APOE	chr19	45411087	+
intron-3CDS	ENST00000277531	ENST00000252486		ChiTaRS3.1			BF887510	PNPLA7	chr9	140375781	+	APOE	chr19	45411087	+
intron-3CDS	ENST00000406427	ENST00000252486		ChiTaRS3.1			BF887510	PNPLA7	chr9	140375781	+	APOE	chr19	45411087	+
intron-3CDS	ENST00000492278	ENST00000252486		ChiTaRS3.1			BF887510	PNPLA7	chr9	140375781	+	APOE	chr19	45411087	+
intron-3CDS	ENST00000265087	ENST00000265087		ChiTaRS3.1			AW604817	STC2	chr5	172744950	-	STC2	chr5	172750393	-
intron-5UTR	ENST00000265087	ENST00000520593		ChiTaRS3.1			AW604817	STC2	chr5	172744950	-	STC2	chr5	172750393	-
intron-3CDS	ENST00000520593	ENST00000265087		ChiTaRS3.1			AW604817	STC2	chr5	172744950	-	STC2	chr5	172750393	-
intron-5UTR	ENST00000520593	ENST00000520593		ChiTaRS3.1			AW604817	STC2	chr5	172744950	-	STC2	chr5	172750393	-
In-frame	ENST00000442011	ENST00000442011		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
In-frame	ENST00000442011	ENST00000305126		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5CDS-intron	ENST00000442011	ENST00000508076		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5CDS-intron	ENST00000442011	ENST00000504185		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
In-frame	ENST00000305126	ENST00000442011		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
In-frame	ENST00000305126	ENST00000305126		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5CDS-intron	ENST00000305126	ENST00000508076		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5CDS-intron	ENST00000305126	ENST00000504185		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5UTR-3CDS	ENST00000508076	ENST00000442011		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5UTR-3CDS	ENST00000508076	ENST00000305126		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5UTR-intron	ENST00000508076	ENST00000508076		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5UTR-intron	ENST00000508076	ENST00000504185		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
intron-3CDS	ENST00000504185	ENST00000442011		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
intron-3CDS	ENST00000504185	ENST00000305126		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
intron-intron	ENST00000504185	ENST00000508076		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
intron-intron	ENST00000504185	ENST00000504185		ChiTaRS3.1			DA549106	TGFBI	chr5	135396556	+	TGFBI	chr5	135389662	+
5CDS-intron	ENST00000254108	ENST00000262027		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000254108	ENST00000315473		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000254108	ENST00000447721		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000380244	ENST00000262027		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000380244	ENST00000315473		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000380244	ENST00000447721		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000568685	ENST00000262027		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000568685	ENST00000315473		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000568685	ENST00000447721		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
intron-intron	ENST00000474990	ENST00000262027		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
intron-intron	ENST00000474990	ENST00000315473		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
intron-intron	ENST00000474990	ENST00000447721		ChiTaRS3.1			AJ301612	FUS	chr16	31193985	+	MARS	chr12	57911536	-
intron-intron	ENST00000389039	ENST00000288221		ChiTaRS3.1			BF829816	DUOX2	chr15	45385842	+	ERC2	chr3	55659504	-
intron-intron	ENST00000389039	ENST00000486496		ChiTaRS3.1			BF829816	DUOX2	chr15	45385842	+	ERC2	chr3	55659504	-
intron-intron	ENST00000603300	ENST00000288221		ChiTaRS3.1			BF829816	DUOX2	chr15	45385842	+	ERC2	chr3	55659504	-
intron-intron	ENST00000603300	ENST00000486496		ChiTaRS3.1			BF829816	DUOX2	chr15	45385842	+	ERC2	chr3	55659504	-
In-frame	ENST00000361866	ENST00000361866		ChiTaRS3.1			BF946591	COL6A1	chr21	47421297	+	COL6A1	chr21	47422497	-
5CDS-3UTR	ENST00000361866	ENST00000498614		ChiTaRS3.1			BF946591	COL6A1	chr21	47421297	+	COL6A1	chr21	47422497	-
3UTR-3CDS	ENST00000498614	ENST00000361866		ChiTaRS3.1			BF946591	COL6A1	chr21	47421297	+	COL6A1	chr21	47422497	-
3UTR-3UTR	ENST00000498614	ENST00000498614		ChiTaRS3.1			BF946591	COL6A1	chr21	47421297	+	COL6A1	chr21	47422497	-
intron-intron	ENST00000382368	ENST00000382368		ChiTaRS3.1			AA077919	FBXL18	chr7	5519918	-	FBXL18	chr7	5519978	+
intron-intron	ENST00000382368	ENST00000453700		ChiTaRS3.1			AA077919	FBXL18	chr7	5519918	-	FBXL18	chr7	5519978	+
intron-intron	ENST00000453700	ENST00000382368		ChiTaRS3.1			AA077919	FBXL18	chr7	5519918	-	FBXL18	chr7	5519978	+
intron-intron	ENST00000453700	ENST00000453700		ChiTaRS3.1			AA077919	FBXL18	chr7	5519918	-	FBXL18	chr7	5519978	+
5CDS-3UTR	ENST00000340384	ENST00000337478		ChiTaRS3.1			DA594703	TUBB4B	chr9	140137061	+	ITPRIP	chr10	106073733	-
5CDS-3UTR	ENST00000340384	ENST00000278071		ChiTaRS3.1			DA594703	TUBB4B	chr9	140137061	+	ITPRIP	chr10	106073733	-
5CDS-3UTR	ENST00000340384	ENST00000358187		ChiTaRS3.1			DA594703	TUBB4B	chr9	140137061	+	ITPRIP	chr10	106073733	-
5CDS-intron	ENST00000604900	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
5CDS-intron	ENST00000412716	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
5CDS-intron	ENST00000449723	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
intron-intron	ENST00000549555	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
intron-intron	ENST00000439799	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
5CDS-intron	ENST00000425012	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
5CDS-intron	ENST00000549732	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
3UTR-intron	ENST00000551534	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
5CDS-intron	ENST00000551313	ENST00000330978		ChiTaRS3.1			DA014768	DAZAP2	chr12	51634881	+	BOLA2	chr16	29874290	-
intron-intron	ENST00000596924	ENST00000596924		ChiTaRS3.1			CB162062	A1BG	chr19	58863007	+	A1BG	chr19	58862810	-
intron-intron	ENST00000596924	ENST00000263100		ChiTaRS3.1			CB162062	A1BG	chr19	58863007	+	A1BG	chr19	58862810	-
intron-intron	ENST00000263100	ENST00000596924		ChiTaRS3.1			CB162062	A1BG	chr19	58863007	+	A1BG	chr19	58862810	-
intron-intron	ENST00000263100	ENST00000263100		ChiTaRS3.1			CB162062	A1BG	chr19	58863007	+	A1BG	chr19	58862810	-
intron-3CDS	ENST00000216181	ENST00000216181		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-intron	ENST00000216181	ENST00000475726		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-intron	ENST00000216181	ENST00000401701		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-3CDS	ENST00000475726	ENST00000216181		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-intron	ENST00000475726	ENST00000475726		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-intron	ENST00000475726	ENST00000401701		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-3CDS	ENST00000401701	ENST00000216181		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-intron	ENST00000401701	ENST00000475726		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-intron	ENST00000401701	ENST00000401701		ChiTaRS3.1			BG990657	MYH9	chr22	36700118	-	MYH9	chr22	36697691	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835159	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
In-frame	ENST00000262043	ENST00000262043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000509330		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000393387		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000420043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000509330	ENST00000262043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000509330		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000393387		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000420043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
In-frame	ENST00000393387	ENST00000262043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000509330		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000393387		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000420043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000420043	ENST00000262043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000509330		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000393387		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000420043		ChiTaRS3.1			AI291151	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000254325	ENST00000254325		ChiTaRS3.1			BE771835	RFX1	chr19	14074740	+	RFX1	chr19	14074487	-
intron-intron	ENST00000254325	ENST00000586913		ChiTaRS3.1			BE771835	RFX1	chr19	14074740	+	RFX1	chr19	14074487	-
intron-3CDS	ENST00000586913	ENST00000254325		ChiTaRS3.1			BE771835	RFX1	chr19	14074740	+	RFX1	chr19	14074487	-
intron-intron	ENST00000586913	ENST00000586913		ChiTaRS3.1			BE771835	RFX1	chr19	14074740	+	RFX1	chr19	14074487	-
intron-3CDS	ENST00000489714	ENST00000597960		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-3CDS	ENST00000489714	ENST00000610101		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000489714	ENST00000596558		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000489714	ENST00000222308		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-5UTR	ENST00000489714	ENST00000608443		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000489714	ENST00000453489		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-3CDS	ENST00000536175	ENST00000597960		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-3CDS	ENST00000536175	ENST00000610101		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000536175	ENST00000596558		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000536175	ENST00000222308		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-5UTR	ENST00000536175	ENST00000608443		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000536175	ENST00000453489		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-3CDS	ENST00000243344	ENST00000597960		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-3CDS	ENST00000243344	ENST00000610101		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000243344	ENST00000596558		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000243344	ENST00000222308		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-5UTR	ENST00000243344	ENST00000608443		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-intron	ENST00000243344	ENST00000453489		ChiTaRS3.1			DA370936	TTC21B	chr2	166734264	-	FKBP8	chr19	18654383	-
intron-3UTR	ENST00000546296	ENST00000319394		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
intron-3UTR	ENST00000546296	ENST00000361771		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
5CDS-3UTR	ENST00000539925	ENST00000319394		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
5CDS-3UTR	ENST00000539925	ENST00000361771		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
5CDS-3UTR	ENST00000228918	ENST00000319394		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
5CDS-3UTR	ENST00000228918	ENST00000361771		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
intron-3UTR	ENST00000543190	ENST00000319394		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
intron-3UTR	ENST00000543190	ENST00000361771		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
5CDS-3UTR	ENST00000541102	ENST00000319394		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
5CDS-3UTR	ENST00000541102	ENST00000361771		ChiTaRS3.1			BE762660	LTBR	chr12	6499418	-	WDTC1	chr1	27633740	+
intron-3CDS	ENST00000546097	ENST00000432176		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000546097	ENST00000409923		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000546097	ENST00000498833		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000546097	ENST00000409763		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000367481	ENST00000432176		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000367481	ENST00000409923		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000367481	ENST00000498833		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000367481	ENST00000409763		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000367480	ENST00000432176		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000367480	ENST00000409923		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000367480	ENST00000498833		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000367480	ENST00000409763		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000321680	ENST00000432176		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000321680	ENST00000409923		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000321680	ENST00000498833		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000321680	ENST00000409763		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3CDS	ENST00000179882	ENST00000432176		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-3UTR	ENST00000179882	ENST00000409923		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-5UTR	ENST00000179882	ENST00000498833		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
intron-intron	ENST00000179882	ENST00000409763		ChiTaRS3.1			AA290947	STXBP5	chr6	147643693	-	FAM126A	chr7	22985784	-
Frame-shit	ENST00000246802	ENST00000246802		ChiTaRS3.1			AI906051	GLTSCR2	chr19	48258002	-	GLTSCR2	chr19	48254276	+
5CDS-3UTR	ENST00000246802	ENST00000598681		ChiTaRS3.1			AI906051	GLTSCR2	chr19	48258002	-	GLTSCR2	chr19	48254276	+
3UTR-3CDS	ENST00000598681	ENST00000246802		ChiTaRS3.1			AI906051	GLTSCR2	chr19	48258002	-	GLTSCR2	chr19	48254276	+
3UTR-3UTR	ENST00000598681	ENST00000598681		ChiTaRS3.1			AI906051	GLTSCR2	chr19	48258002	-	GLTSCR2	chr19	48254276	+
intron-3CDS	ENST00000540235	ENST00000368547		ChiTaRS3.1			CV337393	JUP	chr17	39767336	-	ECHS1	chr10	135176434	-
intron-3CDS	ENST00000393930	ENST00000368547		ChiTaRS3.1			CV337393	JUP	chr17	39767336	-	ECHS1	chr10	135176434	-
intron-3CDS	ENST00000393931	ENST00000368547		ChiTaRS3.1			CV337393	JUP	chr17	39767336	-	ECHS1	chr10	135176434	-
intron-3CDS	ENST00000310706	ENST00000368547		ChiTaRS3.1			CV337393	JUP	chr17	39767336	-	ECHS1	chr10	135176434	-
intron-3CDS	ENST00000216181	ENST00000372189		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000216181	ENST00000372195		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000216181	ENST00000372190		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-intron	ENST00000216181	ENST00000481260		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000475726	ENST00000372189		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000475726	ENST00000372195		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000475726	ENST00000372190		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-intron	ENST00000475726	ENST00000481260		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000401701	ENST00000372189		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000401701	ENST00000372195		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-3CDS	ENST00000401701	ENST00000372190		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-intron	ENST00000401701	ENST00000481260		ChiTaRS3.1			BF988974	MYH9	chr22	36682838	+	RAPGEF1	chr9	134464340	+
intron-intron	ENST00000329276	ENST00000407327		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000329276	ENST00000335757		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000329276	ENST00000586078		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000329276	ENST00000588214		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000492135	ENST00000407327		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000492135	ENST00000335757		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000492135	ENST00000586078		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
intron-intron	ENST00000492135	ENST00000588214		ChiTaRS3.1			DA801918	NOP56	chr20	2637340	+	SLC44A2	chr19	10713131	+
Frame-shit	ENST00000357641	ENST00000380121		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000357641	ENST00000504114		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000357641	ENST00000357505		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000357641	ENST00000399396		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000357641	ENST00000446957		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000357641	ENST00000267068		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
Frame-shit	ENST00000339717	ENST00000380121		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000339717	ENST00000504114		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000339717	ENST00000357505		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000339717	ENST00000399396		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000339717	ENST00000446957		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000339717	ENST00000267068		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
Frame-shit	ENST00000534694	ENST00000380121		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534694	ENST00000504114		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534694	ENST00000357505		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534694	ENST00000399396		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534694	ENST00000446957		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534694	ENST00000267068		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
Frame-shit	ENST00000543502	ENST00000380121		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000543502	ENST00000504114		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000543502	ENST00000357505		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000543502	ENST00000399396		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000543502	ENST00000446957		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000543502	ENST00000267068		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
Frame-shit	ENST00000443324	ENST00000380121		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000443324	ENST00000504114		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000443324	ENST00000357505		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000443324	ENST00000399396		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000443324	ENST00000446957		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000443324	ENST00000267068		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
Frame-shit	ENST00000534400	ENST00000380121		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534400	ENST00000504114		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534400	ENST00000357505		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534400	ENST00000399396		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534400	ENST00000446957		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
5CDS-intron	ENST00000534400	ENST00000267068		ChiTaRS3.1			BE930492	BRPF3	chr6	36168351	-	N4BP2L2	chr13	33054769	-
intron-3UTR	ENST00000378609	ENST00000378609		ChiTaRS3.1			BF974736	GNB1	chr1	1717365	+	GNB1	chr1	1717308	-
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			BF974736	GNB1	chr1	1717365	+	GNB1	chr1	1717308	-
intron-3UTR	ENST00000472614	ENST00000378609		ChiTaRS3.1			BF974736	GNB1	chr1	1717365	+	GNB1	chr1	1717308	-
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			BF974736	GNB1	chr1	1717365	+	GNB1	chr1	1717308	-
intron-3CDS	ENST00000337147	ENST00000341500		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000337147	ENST00000302850		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000367075	ENST00000341500		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000367075	ENST00000302850		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000392177	ENST00000341500		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000392177	ENST00000302850		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000476189	ENST00000341500		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
intron-3CDS	ENST00000476189	ENST00000302850		ChiTaRS3.1			AW999331	EZR	chr6	159229021	+	INSR	chr19	7119557	+
5CDS-intron	ENST00000376929	ENST00000319622		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000565184		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000389093		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000335181		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000568883		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000449901		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000565154		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000376929	ENST00000568459		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000319622		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000565184		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000389093		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000335181		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000568883		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000449901		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000565154		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-intron	ENST00000506690	ENST00000568459		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000319622		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000565184		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000389093		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000335181		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000568883		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000449901		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000565154		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000389805	ENST00000568459		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000319622		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000565184		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000389093		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000335181		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000568883		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000449901		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000565154		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000402874	ENST00000568459		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000319622		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000565184		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000389093		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000335181		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000568883		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000449901		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000565154		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000510187	ENST00000568459		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000319622		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000565184		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000389093		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000335181		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000568883		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000449901		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000565154		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
5CDS-intron	ENST00000360718	ENST00000568459		ChiTaRS3.1			BI009652	SQSTM1	chr5	179251073	-	PKM	chr15	72494881	-
intron-3CDS	ENST00000372842	ENST00000309424		ChiTaRS3.1			AW628336	CERCAM	chr9	131195629	-	CD3EAP	chr19	45912160	+
intron-3CDS	ENST00000372842	ENST00000589804		ChiTaRS3.1			AW628336	CERCAM	chr9	131195629	-	CD3EAP	chr19	45912160	+
intron-3CDS	ENST00000372838	ENST00000309424		ChiTaRS3.1			AW628336	CERCAM	chr9	131195629	-	CD3EAP	chr19	45912160	+
intron-3CDS	ENST00000372838	ENST00000589804		ChiTaRS3.1			AW628336	CERCAM	chr9	131195629	-	CD3EAP	chr19	45912160	+
intron-3CDS	ENST00000493788	ENST00000309424		ChiTaRS3.1			AW628336	CERCAM	chr9	131195629	-	CD3EAP	chr19	45912160	+
intron-3CDS	ENST00000493788	ENST00000589804		ChiTaRS3.1			AW628336	CERCAM	chr9	131195629	-	CD3EAP	chr19	45912160	+
intron-3CDS	ENST00000298992	ENST00000342016		ChiTaRS3.1			CB161195	ABTB2	chr11	34345034	-	CIR1	chr2	175216378	-
intron-3CDS	ENST00000298992	ENST00000362053		ChiTaRS3.1			CB161195	ABTB2	chr11	34345034	-	CIR1	chr2	175216378	-
intron-3CDS	ENST00000435224	ENST00000342016		ChiTaRS3.1			CB161195	ABTB2	chr11	34345034	-	CIR1	chr2	175216378	-
intron-3CDS	ENST00000435224	ENST00000362053		ChiTaRS3.1			CB161195	ABTB2	chr11	34345034	-	CIR1	chr2	175216378	-
intron-3CDS	ENST00000530814	ENST00000342016		ChiTaRS3.1			CB161195	ABTB2	chr11	34345034	-	CIR1	chr2	175216378	-
intron-3CDS	ENST00000530814	ENST00000362053		ChiTaRS3.1			CB161195	ABTB2	chr11	34345034	-	CIR1	chr2	175216378	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835145	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835090	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000264930	ENST00000355451		ChiTaRS3.1			BF762970	SLC12A7	chr5	1051724	+	NUDCD3	chr7	44507787	-
intron-intron	ENST00000264930	ENST00000460110		ChiTaRS3.1			BF762970	SLC12A7	chr5	1051724	+	NUDCD3	chr7	44507787	-
intron-5UTR	ENST00000422514	ENST00000536769		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000422514	ENST00000538617		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000422514	ENST00000546120		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000422514	ENST00000339647		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000422514	ENST00000536661		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000496182	ENST00000536769		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000496182	ENST00000538617		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000496182	ENST00000546120		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000496182	ENST00000339647		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000496182	ENST00000536661		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000394938	ENST00000536769		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000394938	ENST00000538617		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000394938	ENST00000546120		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000394938	ENST00000339647		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
intron-5UTR	ENST00000394938	ENST00000536661		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
5UTR-5UTR	ENST00000472628	ENST00000536769		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
5UTR-5UTR	ENST00000472628	ENST00000538617		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
5UTR-5UTR	ENST00000472628	ENST00000546120		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
5UTR-5UTR	ENST00000472628	ENST00000339647		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
5UTR-5UTR	ENST00000472628	ENST00000536661		ChiTaRS3.1			DB117326	RPL23A	chr17	27047633	+	UBC	chr12	125399196	-
5CDS-intron	ENST00000280379	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000280379	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000280379	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000393632	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000393632	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000393632	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000393630	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000393630	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000393630	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000546600	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000546600	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000546600	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000552738	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000552738	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000552738	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000393629	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000393629	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000393629	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000552115	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-intron	ENST00000552115	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
5CDS-5UTR	ENST00000552115	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
3UTR-intron	ENST00000549378	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
3UTR-intron	ENST00000549378	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
3UTR-5UTR	ENST00000549378	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
intron-intron	ENST00000551397	ENST00000418253		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
intron-intron	ENST00000551397	ENST00000299308		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
intron-5UTR	ENST00000551397	ENST00000535886		ChiTaRS3.1			DA366951	MON2	chr12	62861100	+	TMEM132B	chr12	126128620	+
intron-3CDS	ENST00000377707	ENST00000437048		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-intron	ENST00000377707	ENST00000574029		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377707	ENST00000576149		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377707	ENST00000446250		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377707	ENST00000291074		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377707	ENST00000571805		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377707	ENST00000401468		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-3CDS	ENST00000377700	ENST00000437048		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-intron	ENST00000377700	ENST00000574029		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377700	ENST00000576149		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377700	ENST00000446250		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377700	ENST00000291074		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377700	ENST00000571805		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
intron-5UTR	ENST00000377700	ENST00000401468		ChiTaRS3.1			AW449261	SHB	chr9	37919601	+	VPS53	chr17	436123	+
In-frame	ENST00000306729	ENST00000315869		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
5CDS-5UTR	ENST00000306729	ENST00000487451		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
In-frame	ENST00000306739	ENST00000315869		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
5CDS-5UTR	ENST00000306739	ENST00000487451		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
In-frame	ENST00000580534	ENST00000315869		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
5CDS-5UTR	ENST00000580534	ENST00000487451		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
intron-3CDS	ENST00000581647	ENST00000315869		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
intron-5UTR	ENST00000581647	ENST00000487451		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
intron-3CDS	ENST00000582404	ENST00000315869		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
intron-5UTR	ENST00000582404	ENST00000487451		ChiTaRS3.1			AY034078	ASPSCR1	chr17	79954722	+	TFE3	chrX	48895640	-
intron-3CDS	ENST00000265136	ENST00000373247		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000265136	ENST00000373245		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000265136	ENST00000393706		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000265136	ENST00000460181		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000265136	ENST00000373225		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000395542	ENST00000373247		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000395542	ENST00000373245		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000395542	ENST00000393706		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000395542	ENST00000460181		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000395542	ENST00000373225		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000395540	ENST00000373247		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000395540	ENST00000373245		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000395540	ENST00000393706		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000395540	ENST00000460181		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000395540	ENST00000373225		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000441453	ENST00000373247		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000441453	ENST00000373245		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3CDS	ENST00000441453	ENST00000393706		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000441453	ENST00000460181		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
intron-3UTR	ENST00000441453	ENST00000373225		ChiTaRS3.1			BE514681	COBL	chr7	51336581	-	FPGS	chr9	130572003	+
3UTR-3UTR	ENST00000263674	ENST00000263674		ChiTaRS3.1			AI677651	ARHGEF17	chr11	73080084	-	ARHGEF17	chr11	73079958	+
3UTR-intron	ENST00000263674	ENST00000536170		ChiTaRS3.1			AI677651	ARHGEF17	chr11	73080084	-	ARHGEF17	chr11	73079958	+
intron-3UTR	ENST00000536170	ENST00000263674		ChiTaRS3.1			AI677651	ARHGEF17	chr11	73080084	-	ARHGEF17	chr11	73079958	+
intron-intron	ENST00000536170	ENST00000536170		ChiTaRS3.1			AI677651	ARHGEF17	chr11	73080084	-	ARHGEF17	chr11	73079958	+
intron-3CDS	ENST00000570123	ENST00000510123		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
intron-3CDS	ENST00000570123	ENST00000389158		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
intron-intron	ENST00000570123	ENST00000507413		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
intron-intron	ENST00000570123	ENST00000509257		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000568794	ENST00000510123		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000568794	ENST00000389158		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000568794	ENST00000507413		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000568794	ENST00000509257		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000253452	ENST00000510123		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000253452	ENST00000389158		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000253452	ENST00000507413		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000253452	ENST00000509257		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000562336	ENST00000510123		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000562336	ENST00000389158		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000562336	ENST00000507413		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000562336	ENST00000509257		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000561569	ENST00000510123		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000561569	ENST00000389158		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000561569	ENST00000507413		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000561569	ENST00000509257		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000564903	ENST00000510123		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
Frame-shit	ENST00000564903	ENST00000389158		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000564903	ENST00000507413		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5CDS-intron	ENST00000564903	ENST00000509257		ChiTaRS3.1			BI740287	COX4I1	chr16	85839470	+	NOP16	chr5	175813860	-
5UTR-5UTR	ENST00000358204	ENST00000242576		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
5UTR-intron	ENST00000358204	ENST00000336865		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
5UTR-5UTR	ENST00000537767	ENST00000242576		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
5UTR-intron	ENST00000537767	ENST00000336865		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
intron-5UTR	ENST00000393481	ENST00000242576		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
intron-intron	ENST00000393481	ENST00000336865		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
intron-5UTR	ENST00000485009	ENST00000242576		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
intron-intron	ENST00000485009	ENST00000336865		ChiTaRS3.1			CN410600	TES	chr7	115850613	-	UNG	chr12	109535411	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835154	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
5CDS-intron	ENST00000277165	ENST00000380512		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000277165	ENST00000293831		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000277165	ENST00000577269		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000277165	ENST00000582746		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000277165	ENST00000581808		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000375389	ENST00000380512		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000375389	ENST00000293831		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000375389	ENST00000577269		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000375389	ENST00000582746		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000375389	ENST00000581808		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000340893	ENST00000380512		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000340893	ENST00000293831		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000340893	ENST00000577269		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000340893	ENST00000582746		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000340893	ENST00000581808		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000333936	ENST00000380512		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000333936	ENST00000293831		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000333936	ENST00000577269		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-3UTR	ENST00000333936	ENST00000582746		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
5CDS-intron	ENST00000333936	ENST00000581808		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
intron-intron	ENST00000475933	ENST00000380512		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
intron-3UTR	ENST00000475933	ENST00000293831		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
intron-intron	ENST00000475933	ENST00000577269		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
intron-3UTR	ENST00000475933	ENST00000582746		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
intron-intron	ENST00000475933	ENST00000581808		ChiTaRS3.1			CN430498	FAM120A	chr9	96289505	+	EIF4A1	chr17	7482162	+
Frame-shit	ENST00000219481	ENST00000377351		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
Frame-shit	ENST00000219481	ENST00000335972		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
5CDS-intron	ENST00000219481	ENST00000490869		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
5CDS-intron	ENST00000219481	ENST00000377269		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
Frame-shit	ENST00000397710	ENST00000377351		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
Frame-shit	ENST00000397710	ENST00000335972		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
5CDS-intron	ENST00000397710	ENST00000490869		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
5CDS-intron	ENST00000397710	ENST00000377269		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
Frame-shit	ENST00000424398	ENST00000377351		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
Frame-shit	ENST00000424398	ENST00000335972		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
5CDS-intron	ENST00000424398	ENST00000490869		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
5CDS-intron	ENST00000424398	ENST00000377269		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
intron-3CDS	ENST00000461947	ENST00000377351		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
intron-3CDS	ENST00000461947	ENST00000335972		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
intron-intron	ENST00000461947	ENST00000490869		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
intron-intron	ENST00000461947	ENST00000377269		ChiTaRS3.1			DA633362	DECR2	chr16	451991	+	UBA1	chrX	47070299	+
intron-3UTR	ENST00000593829	ENST00000593829		ChiTaRS3.1			BU623973	LSM4	chr19	18417887	+	LSM4	chr19	18418052	-
intron-3UTR	ENST00000593829	ENST00000252816		ChiTaRS3.1			BU623973	LSM4	chr19	18417887	+	LSM4	chr19	18418052	-
intron-3UTR	ENST00000252816	ENST00000593829		ChiTaRS3.1			BU623973	LSM4	chr19	18417887	+	LSM4	chr19	18418052	-
intron-3UTR	ENST00000252816	ENST00000252816		ChiTaRS3.1			BU623973	LSM4	chr19	18417887	+	LSM4	chr19	18418052	-
intron-3UTR	ENST00000380406	ENST00000380406		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380406	ENST00000380405		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380406	ENST00000320027		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380406	ENST00000445273		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-intron	ENST00000380406	ENST00000429785		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380405	ENST00000380406		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380405	ENST00000380405		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380405	ENST00000320027		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000380405	ENST00000445273		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-intron	ENST00000380405	ENST00000429785		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000320027	ENST00000380406		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000320027	ENST00000380405		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000320027	ENST00000320027		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000320027	ENST00000445273		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-intron	ENST00000320027	ENST00000429785		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000445273	ENST00000380406		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000445273	ENST00000380405		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000445273	ENST00000320027		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000445273	ENST00000445273		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-intron	ENST00000445273	ENST00000429785		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000429785	ENST00000380406		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000429785	ENST00000380405		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000429785	ENST00000320027		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-3UTR	ENST00000429785	ENST00000445273		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
intron-intron	ENST00000429785	ENST00000429785		ChiTaRS3.1			BQ431272	HSPH1	chr13	31711216	+	HSPH1	chr13	31711184	-
In-frame	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
In-frame	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF272382	KMT2A	chr11	118350944	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000421834	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000421834	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370769	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000312431	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370754	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370788	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000361203	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000244364	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000446842	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000340834	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000370765	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000421834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000370769		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000312431		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000370754		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000370788		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000361203		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000244364		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000446842		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000340834		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000370765		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
intron-intron	ENST00000518935	ENST00000518935		ChiTaRS3.1			AJ707571	DST	chr6	56392374	-	DST	chr6	56392294	+
3UTR-3CDS	ENST00000239938	ENST00000239938		ChiTaRS3.1			BF829774	EGR1	chr5	137803849	-	EGR1	chr5	137803560	+
intron-3CDS	ENST00000258796	ENST00000258796		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000258796	ENST00000407643		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000258796	ENST00000403167		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-intron	ENST00000258796	ENST00000477439		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000407643	ENST00000258796		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000407643	ENST00000407643		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000407643	ENST00000403167		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-intron	ENST00000407643	ENST00000477439		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000403167	ENST00000258796		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000403167	ENST00000407643		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000403167	ENST00000403167		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-intron	ENST00000403167	ENST00000477439		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000477439	ENST00000258796		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000477439	ENST00000407643		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-3CDS	ENST00000477439	ENST00000403167		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
intron-intron	ENST00000477439	ENST00000477439		ChiTaRS3.1			BF871240	TTYH3	chr7	2695731	-	TTYH3	chr7	2697932	+
5CDS-intron	ENST00000561924	ENST00000396353		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000561924	ENST00000396355		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000561924	ENST00000396354		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000561924	ENST00000342673		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000561924	ENST00000571896		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-intron	ENST00000290858	ENST00000396353		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000290858	ENST00000396355		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000290858	ENST00000396354		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000290858	ENST00000342673		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
5CDS-3UTR	ENST00000290858	ENST00000571896		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-intron	ENST00000412916	ENST00000396353		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000412916	ENST00000396355		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000412916	ENST00000396354		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000412916	ENST00000342673		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000412916	ENST00000571896		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-intron	ENST00000568858	ENST00000396353		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000568858	ENST00000396355		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000568858	ENST00000396354		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000568858	ENST00000342673		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
intron-3UTR	ENST00000568858	ENST00000571896		ChiTaRS3.1			AF202996	CBFB	chr16	67116231	+	NDE1	chr16	15818658	-
3UTR-3UTR	ENST00000234454	ENST00000397967		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
3UTR-3UTR	ENST00000234454	ENST00000340900		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
3UTR-3UTR	ENST00000234454	ENST00000412779		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
3UTR-3UTR	ENST00000234454	ENST00000555698		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
3UTR-3UTR	ENST00000234454	ENST00000397970		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
intron-3UTR	ENST00000498749	ENST00000397967		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
intron-3UTR	ENST00000498749	ENST00000340900		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
intron-3UTR	ENST00000498749	ENST00000412779		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
intron-3UTR	ENST00000498749	ENST00000555698		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
intron-3UTR	ENST00000498749	ENST00000397970		ChiTaRS3.1			AA026314	SPR	chr2	73119038	-	RNASE1	chr14	21269654	-
intron-3UTR	ENST00000449359	ENST00000275262		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000449359	ENST00000392127		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000449359	ENST00000453779		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000449359	ENST00000361752		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000449359	ENST00000361195		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000449359	ENST00000424802		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000564441	ENST00000275262		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000564441	ENST00000392127		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000564441	ENST00000453779		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000564441	ENST00000361752		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000564441	ENST00000361195		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000564441	ENST00000424802		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000441236	ENST00000275262		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000441236	ENST00000392127		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000441236	ENST00000453779		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000441236	ENST00000361752		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000441236	ENST00000361195		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000441236	ENST00000424802		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000348497	ENST00000275262		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000348497	ENST00000392127		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000348497	ENST00000453779		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000348497	ENST00000361752		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000348497	ENST00000361195		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000348497	ENST00000424802		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000339507	ENST00000275262		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3UTR	ENST00000339507	ENST00000392127		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000339507	ENST00000453779		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000339507	ENST00000361752		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000339507	ENST00000361195		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-intron	ENST00000339507	ENST00000424802		ChiTaRS3.1			BF821829	PRMT7	chr16	68349561	-	QKI	chr6	163985899	-
intron-3CDS	ENST00000372862	ENST00000361866		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-intron	ENST00000372862	ENST00000498614		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-3CDS	ENST00000372858	ENST00000361866		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-intron	ENST00000372858	ENST00000498614		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-3CDS	ENST00000372857	ENST00000361866		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-intron	ENST00000372857	ENST00000498614		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-3CDS	ENST00000372856	ENST00000361866		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-intron	ENST00000372856	ENST00000498614		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-3CDS	ENST00000529216	ENST00000361866		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
intron-intron	ENST00000529216	ENST00000498614		ChiTaRS3.1			BF378691	PABPC4	chr1	40041439	-	COL6A1	chr21	47406527	-
5CDS-intron	ENST00000358161	ENST00000358161		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000358161	ENST00000372739		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000358161	ENST00000372731		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000358161	ENST00000475367		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372739	ENST00000358161		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372739	ENST00000372739		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372739	ENST00000372731		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372739	ENST00000475367		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372731	ENST00000358161		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372731	ENST00000372739		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372731	ENST00000372731		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
5CDS-intron	ENST00000372731	ENST00000475367		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
intron-intron	ENST00000475367	ENST00000358161		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
intron-intron	ENST00000475367	ENST00000372739		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
intron-intron	ENST00000475367	ENST00000372731		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
intron-intron	ENST00000475367	ENST00000475367		ChiTaRS3.1			BF954544	SPTAN1	chr9	131367396	-	SPTAN1	chr9	131380040	-
Frame-shit	ENST00000382533	ENST00000361891		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
5CDS-intron	ENST00000382533	ENST00000480213		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
5CDS-intron	ENST00000382533	ENST00000368681		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
Frame-shit	ENST00000607003	ENST00000361891		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
5CDS-intron	ENST00000607003	ENST00000480213		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
5CDS-intron	ENST00000607003	ENST00000368681		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
intron-3CDS	ENST00000485646	ENST00000361891		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
intron-intron	ENST00000485646	ENST00000480213		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
intron-intron	ENST00000485646	ENST00000368681		ChiTaRS3.1			DB116654	SAP18	chr13	21721410	+	ILF2	chr1	153642657	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BF370040	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000262613	ENST00000366966		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000262613	ENST00000366964		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000262613	ENST00000366968		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000262613	ENST00000366965		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000262613	ENST00000271776		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000262613	ENST00000366967		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000262613	ENST00000517399		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000366966		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000366964		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000366968		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000366965		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000271776		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000366967		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-intron	ENST00000413388	ENST00000517399		ChiTaRS3.1			BF746841	SLC9A3R1	chr17	72759504	-	VASH2	chr1	213151439	-
intron-3UTR	ENST00000395631	ENST00000517671		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000395631	ENST00000296930		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000395631	ENST00000351986		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-intron	ENST00000395631	ENST00000393820		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000341590	ENST00000517671		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000341590	ENST00000296930		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000341590	ENST00000351986		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-intron	ENST00000341590	ENST00000393820		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000343279	ENST00000517671		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000343279	ENST00000296930		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000343279	ENST00000351986		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-intron	ENST00000343279	ENST00000393820		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000553373	ENST00000517671		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000553373	ENST00000296930		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000553373	ENST00000351986		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-intron	ENST00000553373	ENST00000393820		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000399304	ENST00000517671		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000399304	ENST00000296930		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000399304	ENST00000351986		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-intron	ENST00000399304	ENST00000393820		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000557255	ENST00000517671		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000557255	ENST00000296930		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000557255	ENST00000351986		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-intron	ENST00000557255	ENST00000393820		ChiTaRS3.1			N88349	FERMT2	chr14	53331150	-	NPM1	chr5	170837756	+
intron-3UTR	ENST00000327435	ENST00000327435		ChiTaRS3.1			BM353985	ADI1	chr2	3502455	+	ADI1	chr2	3502414	-
intron-3UTR	ENST00000327435	ENST00000382093		ChiTaRS3.1			BM353985	ADI1	chr2	3502455	+	ADI1	chr2	3502414	-
intron-3UTR	ENST00000382093	ENST00000327435		ChiTaRS3.1			BM353985	ADI1	chr2	3502455	+	ADI1	chr2	3502414	-
intron-3UTR	ENST00000382093	ENST00000382093		ChiTaRS3.1			BM353985	ADI1	chr2	3502455	+	ADI1	chr2	3502414	-
3UTR-3UTR	ENST00000298281	ENST00000298281		ChiTaRS3.1			BQ048986	PCF11	chr11	82896825	+	PCF11	chr11	82896707	-
Frame-shit	ENST00000262367	ENST00000372725		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000262367	ENST00000372724		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000262367	ENST00000287239		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
In-frame	ENST00000262367	ENST00000372714		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000262367	ENST00000372711		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
5CDS-intron	ENST00000262367	ENST00000490365		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000382070	ENST00000372725		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000382070	ENST00000372724		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000382070	ENST00000287239		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
In-frame	ENST00000382070	ENST00000372714		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
Frame-shit	ENST00000382070	ENST00000372711		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
5CDS-intron	ENST00000382070	ENST00000490365		ChiTaRS3.1			AJ299262	CREBBP	chr16	3929833	-	KAT6B	chr10	76788245	+
In-frame	ENST00000605788	ENST00000319374		ChiTaRS3.1			DA794807	NOLC1	chr10	103917020	+	ZDHHC22	chr14	77605647	-
In-frame	ENST00000405356	ENST00000319374		ChiTaRS3.1			DA794807	NOLC1	chr10	103917020	+	ZDHHC22	chr14	77605647	-
intron-3CDS	ENST00000603742	ENST00000319374		ChiTaRS3.1			DA794807	NOLC1	chr10	103917020	+	ZDHHC22	chr14	77605647	-
In-frame	ENST00000488254	ENST00000319374		ChiTaRS3.1			DA794807	NOLC1	chr10	103917020	+	ZDHHC22	chr14	77605647	-
intron-3CDS	ENST00000477977	ENST00000319374		ChiTaRS3.1			DA794807	NOLC1	chr10	103917020	+	ZDHHC22	chr14	77605647	-
intron-3CDS	ENST00000553804	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000553804	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000553804	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000553804	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000553804	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000553804	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000553804	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000553804	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257879	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257879	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257879	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257879	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257879	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257879	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257879	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257879	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000347027	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000347027	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000347027	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000347027	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000347027	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000347027	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000347027	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000347027	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000452168	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000452168	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000452168	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000452168	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000452168	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000452168	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000452168	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000452168	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394229	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394229	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394229	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394229	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394229	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394229	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394229	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394229	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257880	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257880	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257880	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000257880	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257880	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257880	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257880	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000257880	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394230	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394230	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394230	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000394230	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394230	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394230	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394230	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000394230	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000555728	ENST00000553804		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000555728	ENST00000257879		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000555728	ENST00000347027		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3CDS	ENST00000555728	ENST00000452168		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000555728	ENST00000394229		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000555728	ENST00000257880		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000555728	ENST00000394230		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000555728	ENST00000555728		ChiTaRS3.1			AA935778	ITGA7	chr12	56079032	+	ITGA7	chr12	56078998	-
intron-3UTR	ENST00000294016	ENST00000331595		ChiTaRS3.1			BF871520	ADCY9	chr16	4099044	-	BGN	chrX	152774633	+
intron-3UTR	ENST00000294016	ENST00000480756		ChiTaRS3.1			BF871520	ADCY9	chr16	4099044	-	BGN	chrX	152774633	+
intron-3UTR	ENST00000571889	ENST00000331595		ChiTaRS3.1			BF871520	ADCY9	chr16	4099044	-	BGN	chrX	152774633	+
intron-3UTR	ENST00000571889	ENST00000480756		ChiTaRS3.1			BF871520	ADCY9	chr16	4099044	-	BGN	chrX	152774633	+
intron-3CDS	ENST00000441802	ENST00000441802		ChiTaRS3.1			BX950906	FAT1	chr4	187524083	+	FAT1	chr4	187524454	-
intron-intron	ENST00000441802	ENST00000512347		ChiTaRS3.1			BX950906	FAT1	chr4	187524083	+	FAT1	chr4	187524454	-
intron-3CDS	ENST00000512347	ENST00000441802		ChiTaRS3.1			BX950906	FAT1	chr4	187524083	+	FAT1	chr4	187524454	-
intron-intron	ENST00000512347	ENST00000512347		ChiTaRS3.1			BX950906	FAT1	chr4	187524083	+	FAT1	chr4	187524454	-
intron-3CDS	ENST00000399215	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399215	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399215	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000399215	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000481477	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000481477	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000481477	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000481477	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399212	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399212	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399212	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000399212	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000332131	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000332131	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000332131	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000332131	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399205	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399205	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399205	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000399205	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399208	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399208	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399208	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000399208	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399201	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399201	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399201	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000399201	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399207	ENST00000358602		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399207	ENST00000509867		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000399207	ENST00000330838		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-intron	ENST00000399207	ENST00000514252		ChiTaRS3.1			DB034419	SETD4	chr21	37443269	+	ANKRD17	chr4	73956613	-
intron-3CDS	ENST00000358161	ENST00000358161		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000358161	ENST00000372739		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000358161	ENST00000372731		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-intron	ENST00000358161	ENST00000475367		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000372739	ENST00000358161		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000372739	ENST00000372739		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000372739	ENST00000372731		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-intron	ENST00000372739	ENST00000475367		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000372731	ENST00000358161		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000372731	ENST00000372739		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000372731	ENST00000372731		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-intron	ENST00000372731	ENST00000475367		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000475367	ENST00000358161		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000475367	ENST00000372739		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000475367	ENST00000372731		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-intron	ENST00000475367	ENST00000475367		ChiTaRS3.1			BF081277	SPTAN1	chr9	131375660	-	SPTAN1	chr9	131377949	+
intron-3CDS	ENST00000390548	ENST00000294119		ChiTaRS3.1			BE171108	IGHG1	chr14	106208265	-	UBXN1	chr11	62445532	+
intron-3CDS	ENST00000390548	ENST00000301935		ChiTaRS3.1			BE171108	IGHG1	chr14	106208265	-	UBXN1	chr11	62445532	+
intron-intron	ENST00000390548	ENST00000533000		ChiTaRS3.1			BE171108	IGHG1	chr14	106208265	-	UBXN1	chr11	62445532	+
intron-intron	ENST00000390548	ENST00000529640		ChiTaRS3.1			BE171108	IGHG1	chr14	106208265	-	UBXN1	chr11	62445532	+
intron-5UTR	ENST00000390548	ENST00000524762		ChiTaRS3.1			BE171108	IGHG1	chr14	106208265	-	UBXN1	chr11	62445532	+
intron-3CDS	ENST00000251642	ENST00000280886		ChiTaRS3.1			BM174932	DHX58	chr17	40260058	+	DIP2C	chr10	460042	-
intron-3CDS	ENST00000251642	ENST00000381496		ChiTaRS3.1			BM174932	DHX58	chr17	40260058	+	DIP2C	chr10	460042	-
intron-intron	ENST00000251642	ENST00000540204		ChiTaRS3.1			BM174932	DHX58	chr17	40260058	+	DIP2C	chr10	460042	-
intron-intron	ENST00000262844	ENST00000319359		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000262844	ENST00000497465		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000372059	ENST00000319359		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000372059	ENST00000497465		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000372057	ENST00000319359		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000372057	ENST00000497465		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000496695	ENST00000319359		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-intron	ENST00000496695	ENST00000497465		ChiTaRS3.1			BE171379	AMMECR1	chrX	109657370	-	ELL3	chr15	44086050	-
intron-5UTR	ENST00000372844	ENST00000536769		ChiTaRS3.1			DA136945	HPCAL4	chr1	40149797	-	UBC	chr12	125398319	-
intron-5UTR	ENST00000372844	ENST00000538617		ChiTaRS3.1			DA136945	HPCAL4	chr1	40149797	-	UBC	chr12	125398319	-
intron-5UTR	ENST00000372844	ENST00000546120		ChiTaRS3.1			DA136945	HPCAL4	chr1	40149797	-	UBC	chr12	125398319	-
intron-5UTR	ENST00000372844	ENST00000339647		ChiTaRS3.1			DA136945	HPCAL4	chr1	40149797	-	UBC	chr12	125398319	-
intron-intron	ENST00000372844	ENST00000536661		ChiTaRS3.1			DA136945	HPCAL4	chr1	40149797	-	UBC	chr12	125398319	-
intron-5UTR	ENST00000299633	ENST00000299633		ChiTaRS3.1			AI342744	HDGFRP3	chr15	83876381	+	HDGFRP3	chr15	83876237	-
3UTR-3UTR	ENST00000291577	ENST00000369790		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000291577	ENST00000350743		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000291577	ENST00000299328		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000291577	ENST00000351413		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000291577	ENST00000369776		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-intron	ENST00000291577	ENST00000475699		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-intron	ENST00000291577	ENST00000498029		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000427803	ENST00000369790		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000427803	ENST00000350743		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000427803	ENST00000299328		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000427803	ENST00000351413		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000427803	ENST00000369776		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-intron	ENST00000427803	ENST00000475699		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-intron	ENST00000427803	ENST00000498029		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000493883	ENST00000369790		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000493883	ENST00000350743		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000493883	ENST00000299328		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000493883	ENST00000351413		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3UTR	ENST00000493883	ENST00000369776		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-intron	ENST00000493883	ENST00000475699		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-intron	ENST00000493883	ENST00000498029		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000348499	ENST00000369790		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000348499	ENST00000350743		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000348499	ENST00000299328		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000348499	ENST00000351413		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-3UTR	ENST00000348499	ENST00000369776		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-intron	ENST00000348499	ENST00000475699		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
3UTR-intron	ENST00000348499	ENST00000498029		ChiTaRS3.1			AW375494	C21orf33	chr21	45565491	-	TAZ	chrX	153649922	+
intron-3CDS	ENST00000530157	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000525451	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000308162	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000527344	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000531407	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000524553	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000534769	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
intron-3CDS	ENST00000531413	ENST00000373087		ChiTaRS3.1			BE829996	CFL1	chr11	65623438	-	ZC3H12A	chr1	37945900	+
In-frame	ENST00000428314	ENST00000428314		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000428314	ENST00000389524		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000428314	ENST00000409816		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000428314	ENST00000409090		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000389524	ENST00000428314		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000389524	ENST00000389524		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000389524	ENST00000409816		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000389524	ENST00000409090		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000409816	ENST00000428314		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000409816	ENST00000389524		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000409816	ENST00000409816		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
In-frame	ENST00000409816	ENST00000409090		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
intron-3CDS	ENST00000409090	ENST00000428314		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
intron-3CDS	ENST00000409090	ENST00000389524		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
intron-3CDS	ENST00000409090	ENST00000409816		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
intron-3CDS	ENST00000409090	ENST00000409090		ChiTaRS3.1			CV395118	MYO7B	chr2	128335808	-	MYO7B	chr2	128384775	+
intron-3CDS	ENST00000395631	ENST00000543872		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000395631	ENST00000578922		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000395631	ENST00000300917		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-intron	ENST00000395631	ENST00000580498		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000341590	ENST00000543872		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000341590	ENST00000578922		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000341590	ENST00000300917		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-intron	ENST00000341590	ENST00000580498		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000343279	ENST00000543872		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000343279	ENST00000578922		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000343279	ENST00000300917		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-intron	ENST00000343279	ENST00000580498		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000553373	ENST00000543872		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000553373	ENST00000578922		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000553373	ENST00000300917		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-intron	ENST00000553373	ENST00000580498		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000399304	ENST00000543872		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000399304	ENST00000578922		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000399304	ENST00000300917		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-intron	ENST00000399304	ENST00000580498		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000557255	ENST00000543872		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000557255	ENST00000578922		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3CDS	ENST00000557255	ENST00000300917		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-intron	ENST00000557255	ENST00000580498		ChiTaRS3.1			BQ366984	FERMT2	chr14	53331203	-	SMG8	chr17	57288616	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835147	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
In-frame	ENST00000589037	ENST00000393193		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589037	ENST00000376392		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589037	ENST00000555572		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000253788	ENST00000393193		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000253788	ENST00000376392		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000253788	ENST00000555572		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589913	ENST00000393193		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589913	ENST00000376392		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589913	ENST00000555572		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
intron-3CDS	ENST00000590864	ENST00000393193		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
intron-3CDS	ENST00000590864	ENST00000376392		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
intron-3CDS	ENST00000590864	ENST00000555572		ChiTaRS3.1			EC440105	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
Frame-shit	ENST00000394417	ENST00000262982		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000394417	ENST00000542325		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000394417	ENST00000396192		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
5CDS-intron	ENST00000394417	ENST00000469700		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000467648	ENST00000262982		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000467648	ENST00000542325		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000467648	ENST00000396192		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
5CDS-intron	ENST00000467648	ENST00000469700		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
intron-3CDS	ENST00000487469	ENST00000262982		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
intron-3CDS	ENST00000487469	ENST00000542325		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
intron-3CDS	ENST00000487469	ENST00000396192		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
intron-intron	ENST00000487469	ENST00000469700		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000337130	ENST00000262982		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000337130	ENST00000542325		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000337130	ENST00000396192		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
5CDS-intron	ENST00000337130	ENST00000469700		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000445915	ENST00000262982		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000445915	ENST00000542325		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
Frame-shit	ENST00000445915	ENST00000396192		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
5CDS-intron	ENST00000445915	ENST00000469700		ChiTaRS3.1			BP430745	UGP2	chr2	64114644	+	CSE1L	chr20	47706108	+
3UTR-3UTR	ENST00000244745	ENST00000244745		ChiTaRS3.1			BU676818	SOX4	chr6	21597133	-	SOX4	chr6	21597073	+
3UTR-intron	ENST00000244745	ENST00000543472		ChiTaRS3.1			BU676818	SOX4	chr6	21597133	-	SOX4	chr6	21597073	+
intron-3UTR	ENST00000543472	ENST00000244745		ChiTaRS3.1			BU676818	SOX4	chr6	21597133	-	SOX4	chr6	21597073	+
intron-intron	ENST00000543472	ENST00000543472		ChiTaRS3.1			BU676818	SOX4	chr6	21597133	-	SOX4	chr6	21597073	+
5CDS-5UTR	ENST00000344691	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000344691	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000344691	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000344691	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000344691	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000344691	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000344691	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000344691	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000325074	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000325074	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000325074	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000325074	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000325074	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000325074	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000325074	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000325074	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000437180	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000437180	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000437180	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000437180	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000437180	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000437180	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000437180	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000437180	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000300305	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000300305	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000300305	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000300305	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000300305	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000300305	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000300305	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000300305	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000399240	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000399240	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000399240	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000399240	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000399240	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000399240	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000399240	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000399240	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000486278	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000486278	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000486278	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000486278	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000486278	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000486278	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000486278	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000486278	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000494829	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000494829	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000494829	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000494829	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000494829	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000494829	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-intron	ENST00000494829	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-5UTR	ENST00000494829	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000358356	ENST00000409598		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000358356	ENST00000424281		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000358356	ENST00000304527		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000358356	ENST00000455740		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000358356	ENST00000409252		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000358356	ENST00000514152		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-intron	ENST00000358356	ENST00000427414		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
5CDS-5UTR	ENST00000358356	ENST00000604030		ChiTaRS3.1			EU093086	RUNX1	chr21	36231771	-	SH3D19	chr4	152147238	-
intron-3CDS	ENST00000266070	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000266070	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000395343	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000395343	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000395340	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000395340	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000395335	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000395335	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000370371	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000370371	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000370368	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000370368	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000354665	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000354665	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000370366	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000370366	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3CDS	ENST00000266071	ENST00000374183		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000266071	ENST00000462085		ChiTaRS3.1			BE078256	DIDO1	chr20	61541014	-	BSPRY	chr9	116132379	+
intron-3UTR	ENST00000256413	ENST00000585421		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000256413	ENST00000536189		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000256413	ENST00000262768		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000256413	ENST00000586057		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000382998	ENST00000585421		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000382998	ENST00000536189		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000382998	ENST00000262768		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000382998	ENST00000586057		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000592658	ENST00000585421		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000592658	ENST00000536189		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000592658	ENST00000262768		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
intron-3UTR	ENST00000592658	ENST00000586057		ChiTaRS3.1			BE008175	CTIF	chr18	46190278	-	TIMP2	chr17	76849680	+
5CDS-intron	ENST00000451137	ENST00000263734		ChiTaRS3.1			BQ366671	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
5CDS-intron	ENST00000451137	ENST00000467888		ChiTaRS3.1			BQ366671	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
intron-intron	ENST00000480413	ENST00000263734		ChiTaRS3.1			BQ366671	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
intron-intron	ENST00000480413	ENST00000467888		ChiTaRS3.1			BQ366671	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
intron-3CDS	ENST00000260227	ENST00000260227		ChiTaRS3.1			BF081442	MMP7	chr11	102398354	+	MMP7	chr11	102401480	-
intron-intron	ENST00000407073	ENST00000422163		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000407073	ENST00000491100		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000407073	ENST00000313601		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000407073	ENST00000536647		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000407073	ENST00000440628		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000407073	ENST00000451956		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000407073	ENST00000266027		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000422163		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000491100		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000313601		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000536647		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000440628		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000451956		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000478804	ENST00000266027		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000422163		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000491100		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000313601		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000536647		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000440628		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000451956		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
intron-intron	ENST00000404807	ENST00000266027		ChiTaRS3.1			BM931874	MBD5	chr2	149024645	-	GNAI2	chr3	50268507	+
Frame-shit	ENST00000359282	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359282	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359282	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359282	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000341832		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000340677		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000407249		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000317673		ChiTaRS3.1			BE378162	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
intron-intron	ENST00000204726	ENST00000447110		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000204726	ENST00000581552		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000204726	ENST00000584803		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000204726	ENST00000583222		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000447110		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000581552		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000584803		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000450791	ENST00000583222		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000447110		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000581552		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000584803		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000456883	ENST00000583222		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000447110		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000581552		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000584803		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000537452	ENST00000583222		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000447110		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000581552		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000584803		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000545875	ENST00000583222		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000447110		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000581552		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000584803		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
intron-intron	ENST00000534967	ENST00000583222		ChiTaRS3.1			BF902971	GOLGA3	chr12	133378421	-	PIK3R5	chr17	8847967	-
5CDS-intron	ENST00000286122	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000286122	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000286122	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000355163	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000355163	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000355163	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000479780	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000479780	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000479780	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000393208	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000393208	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000393208	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000355022	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000355022	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000355022	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000538234	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000538234	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000538234	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000393207	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000393207	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
5CDS-intron	ENST00000393207	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
intron-intron	ENST00000481948	ENST00000308831		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
intron-intron	ENST00000481948	ENST00000533360		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
intron-intron	ENST00000481948	ENST00000532559		ChiTaRS3.1			BG015853	BANP	chr16	88061209	-	RHOD	chr11	66824505	-
intron-3CDS	ENST00000586746	ENST00000586746		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-3CDS	ENST00000586746	ENST00000215587		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-intron	ENST00000586746	ENST00000585838		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-3CDS	ENST00000215587	ENST00000586746		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-3CDS	ENST00000215587	ENST00000215587		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-intron	ENST00000215587	ENST00000585838		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-3CDS	ENST00000585838	ENST00000586746		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-3CDS	ENST00000585838	ENST00000215587		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
intron-intron	ENST00000585838	ENST00000585838		ChiTaRS3.1			BQ362075	POLR2E	chr19	1093828	+	POLR2E	chr19	1093992	-
In-frame	ENST00000381337	ENST00000277817		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000381337	ENST00000412272		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000381337	ENST00000395198		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000381337	ENST00000373700		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-3UTR	ENST00000381337	ENST00000395187		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-intron	ENST00000381337	ENST00000480158		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-intron	ENST00000381337	ENST00000492996		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000431224	ENST00000277817		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000431224	ENST00000412272		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000431224	ENST00000395198		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000431224	ENST00000373700		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-3UTR	ENST00000431224	ENST00000395187		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-intron	ENST00000431224	ENST00000480158		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-intron	ENST00000431224	ENST00000492996		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000396083	ENST00000277817		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000396083	ENST00000412272		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000396083	ENST00000395198		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
In-frame	ENST00000396083	ENST00000373700		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-3UTR	ENST00000396083	ENST00000395187		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-intron	ENST00000396083	ENST00000480158		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5CDS-intron	ENST00000396083	ENST00000492996		ChiTaRS3.1			DB217724	THUMPD1	chr16	20752828	-	HERC4	chr10	69726561	-
5UTR-intron	ENST00000337137	ENST00000397397		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000397411		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000397396		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000397408		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000397406		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000409543		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000525201		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000397404		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000346501		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000337137	ENST00000409531		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000397397		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000397411		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000397396		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000397408		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000397406		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000409543		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000525201		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000397404		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000346501		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000380995	ENST00000409531		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000397397		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000397411		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000397396		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000397408		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000397406		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000409543		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000525201		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000397404		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000346501		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000407381	ENST00000409531		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000397397		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000397411		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000397396		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000397408		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000397406		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000409543		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000525201		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000397404		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000346501		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
5UTR-intron	ENST00000355704	ENST00000409531		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000397397		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000397411		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000397396		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000397408		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000397406		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000409543		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000525201		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000397404		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000346501		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000472791	ENST00000409531		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000397397		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000397411		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000397396		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000397408		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000397406		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000409543		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000525201		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000397404		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000346501		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000406733	ENST00000409531		ChiTaRS3.1			DB260885	TBC1D22A	chr22	47158616	+	TSPAN4	chr11	859367	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-5UTR	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-5UTR	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ451147	ETV6	chr12	12268261	+	RUNX1	chr21	36265262	-
intron-3CDS	ENST00000250894	ENST00000303714		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000250894	ENST00000409829		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000250894	ENST00000409349		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000356010	ENST00000303714		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000356010	ENST00000409829		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000356010	ENST00000409349		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000568271	ENST00000303714		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000568271	ENST00000409829		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000568271	ENST00000409349		ChiTaRS3.1			BQ363789	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
Frame-shit	ENST00000605788	ENST00000602836		ChiTaRS3.1			BF374974	NOLC1	chr10	103919002	-	BIVM-ERCC5	chr13	103514547	+
Frame-shit	ENST00000405356	ENST00000602836		ChiTaRS3.1			BF374974	NOLC1	chr10	103919002	-	BIVM-ERCC5	chr13	103514547	+
5UTR-3CDS	ENST00000603742	ENST00000602836		ChiTaRS3.1			BF374974	NOLC1	chr10	103919002	-	BIVM-ERCC5	chr13	103514547	+
Frame-shit	ENST00000488254	ENST00000602836		ChiTaRS3.1			BF374974	NOLC1	chr10	103919002	-	BIVM-ERCC5	chr13	103514547	+
intron-3CDS	ENST00000477977	ENST00000602836		ChiTaRS3.1			BF374974	NOLC1	chr10	103919002	-	BIVM-ERCC5	chr13	103514547	+
intron-3UTR	ENST00000602758	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
intron-3UTR	ENST00000602719	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
intron-3UTR	ENST00000602583	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
intron-3UTR	ENST00000602675	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
intron-3UTR	ENST00000284245	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
intron-3UTR	ENST00000602914	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
intron-3UTR	ENST00000602766	ENST00000338380		ChiTaRS3.1			BI063065	C16orf74	chr16	85759593	+	SLPI	chr20	43881039	+
5CDS-3UTR	ENST00000355857	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000355857	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000355857	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000355857	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000535617	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000535617	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000535617	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000535617	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000535757	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000535757	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000535757	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000535757	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000409094	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000409094	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000409094	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000409094	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000311521	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000311521	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000311521	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000311521	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
3UTR-3UTR	ENST00000460901	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
3UTR-intron	ENST00000460901	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
3UTR-3UTR	ENST00000460901	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
3UTR-intron	ENST00000460901	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000542275	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000542275	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000542275	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000542275	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000393103	ENST00000420329		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000393103	ENST00000560098		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-3UTR	ENST00000393103	ENST00000268184		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
5CDS-intron	ENST00000393103	ENST00000558619		ChiTaRS3.1			DA791146	DBI	chr2	120128366	+	CRTC3	chr15	91185609	+
Frame-shit	ENST00000442011	ENST00000322764		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
Frame-shit	ENST00000442011	ENST00000449423		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
Frame-shit	ENST00000442011	ENST00000392910		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
5CDS-intron	ENST00000442011	ENST00000477373		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
Frame-shit	ENST00000305126	ENST00000322764		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
Frame-shit	ENST00000305126	ENST00000449423		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
Frame-shit	ENST00000305126	ENST00000392910		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
5CDS-intron	ENST00000305126	ENST00000477373		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-3CDS	ENST00000508076	ENST00000322764		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-3CDS	ENST00000508076	ENST00000449423		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-3CDS	ENST00000508076	ENST00000392910		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-intron	ENST00000508076	ENST00000477373		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-3CDS	ENST00000504185	ENST00000322764		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-3CDS	ENST00000504185	ENST00000449423		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-3CDS	ENST00000504185	ENST00000392910		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-intron	ENST00000504185	ENST00000477373		ChiTaRS3.1			AW239032	TGFBI	chr5	135383072	+	ZYX	chr7	143085700	+
intron-intron	ENST00000540235	ENST00000540235		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
intron-3UTR	ENST00000540235	ENST00000393930		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
intron-3UTR	ENST00000540235	ENST00000393931		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
intron-3UTR	ENST00000540235	ENST00000310706		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-intron	ENST00000393930	ENST00000540235		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393930	ENST00000393930		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393930	ENST00000393931		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393930	ENST00000310706		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-intron	ENST00000393931	ENST00000540235		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393931	ENST00000393930		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393931	ENST00000393931		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393931	ENST00000310706		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-intron	ENST00000310706	ENST00000540235		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000310706	ENST00000393930		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000310706	ENST00000393931		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000310706	ENST00000310706		ChiTaRS3.1			BI058841	JUP	chr17	39913666	-	JUP	chr17	39911397	+
Frame-shit	ENST00000262367	ENST00000406337		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
Frame-shit	ENST00000262367	ENST00000265713		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
Frame-shit	ENST00000262367	ENST00000396930		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
5CDS-intron	ENST00000262367	ENST00000485568		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
Frame-shit	ENST00000382070	ENST00000406337		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
Frame-shit	ENST00000382070	ENST00000265713		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
Frame-shit	ENST00000382070	ENST00000396930		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
5CDS-intron	ENST00000382070	ENST00000485568		ChiTaRS3.1			AJ251845	CREBBP	chr16	3929833	-	KAT6A	chr8	41792387	-
intron-3CDS	ENST00000396573	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000396573	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396573	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396573	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396573	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396573	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396573	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000562109	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000562109	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000562109	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000562109	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000562109	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000562109	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000562109	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000535259	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000535259	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000535259	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000535259	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000535259	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000535259	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000535259	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000404927	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000404927	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000404927	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000404927	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000404927	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000404927	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000404927	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000330684	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000330684	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000330684	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000330684	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000330684	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000330684	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000330684	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000396575	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000396575	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396575	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396575	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396575	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396575	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000396575	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000566670	ENST00000396573		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000566670	ENST00000562109		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000566670	ENST00000535259		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000566670	ENST00000404927		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000566670	ENST00000330684		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000566670	ENST00000396575		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-intron	ENST00000566670	ENST00000566670		ChiTaRS3.1			BP251842	GRIN2A	chr16	9857425	-	GRIN2A	chr16	10273964	-
intron-3CDS	ENST00000390237	ENST00000390237		ChiTaRS3.1			AA744404	IGKC	chr2	89156947	+	IGKC	chr2	89156883	-
In-frame	ENST00000533820	ENST00000533820		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533820	ENST00000533129		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533820	ENST00000524773		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533820	ENST00000279247		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000533820	ENST00000527469		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000533820	ENST00000527323		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533129	ENST00000533820		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533129	ENST00000533129		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533129	ENST00000524773		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000533129	ENST00000279247		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000533129	ENST00000527469		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000533129	ENST00000527323		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000524773	ENST00000533820		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000524773	ENST00000533129		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000524773	ENST00000524773		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000524773	ENST00000279247		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000524773	ENST00000527469		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000524773	ENST00000527323		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000279247	ENST00000533820		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000279247	ENST00000533129		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000279247	ENST00000524773		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000279247	ENST00000279247		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000279247	ENST00000527469		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000279247	ENST00000527323		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
3UTR-3CDS	ENST00000527469	ENST00000533820		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
3UTR-3CDS	ENST00000527469	ENST00000533129		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
3UTR-3CDS	ENST00000527469	ENST00000524773		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
3UTR-3CDS	ENST00000527469	ENST00000279247		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
3UTR-intron	ENST00000527469	ENST00000527469		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
3UTR-intron	ENST00000527469	ENST00000527323		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000527323	ENST00000533820		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000527323	ENST00000533129		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000527323	ENST00000524773		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
In-frame	ENST00000527323	ENST00000279247		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000527323	ENST00000527469		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-intron	ENST00000527323	ENST00000527323		ChiTaRS3.1			BI023940	CAPN1	chr11	64950987	+	CAPN1	chr11	64953508	-
5CDS-5UTR	ENST00000438423	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000438423	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000438423	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000267811	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000267811	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000267811	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000452095	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000452095	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000452095	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000333725	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000333725	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000333725	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000557843	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000557843	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
5CDS-5UTR	ENST00000557843	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000560764	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000560764	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000560764	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000543579	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000543579	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000543579	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000537840	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000537840	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000537840	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000343827	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000343827	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000343827	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000559710	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000559710	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000559710	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000559703	ENST00000338488		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000559703	ENST00000395097		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-5UTR	ENST00000559703	ENST00000330847		ChiTaRS3.1			AF289510	TCF12	chr15	57384089	+	NR4A3	chr9	102590322	+
intron-intron	ENST00000329957	ENST00000329957		ChiTaRS3.1			BQ354046	MOB2	chr11	1775336	+	MOB2	chr11	1776185	-
intron-intron	ENST00000329957	ENST00000526462		ChiTaRS3.1			BQ354046	MOB2	chr11	1775336	+	MOB2	chr11	1776185	-
intron-intron	ENST00000526462	ENST00000329957		ChiTaRS3.1			BQ354046	MOB2	chr11	1775336	+	MOB2	chr11	1776185	-
intron-intron	ENST00000526462	ENST00000526462		ChiTaRS3.1			BQ354046	MOB2	chr11	1775336	+	MOB2	chr11	1776185	-
intron-3CDS	ENST00000311713	ENST00000337018		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000311713	ENST00000452918		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000311713	ENST00000601879		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000311713	ENST00000600377		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000311713	ENST00000456085		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-intron	ENST00000311713	ENST00000598202		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000278856	ENST00000337018		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000278856	ENST00000452918		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000278856	ENST00000601879		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000278856	ENST00000600377		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000278856	ENST00000456085		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-intron	ENST00000278856	ENST00000598202		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000529106	ENST00000337018		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000529106	ENST00000452918		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000529106	ENST00000601879		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000529106	ENST00000600377		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000529106	ENST00000456085		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-intron	ENST00000529106	ENST00000598202		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525239	ENST00000337018		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525239	ENST00000452918		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525239	ENST00000601879		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525239	ENST00000600377		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525239	ENST00000456085		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-intron	ENST00000525239	ENST00000598202		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525752	ENST00000337018		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525752	ENST00000452918		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525752	ENST00000601879		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525752	ENST00000600377		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000525752	ENST00000456085		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-intron	ENST00000525752	ENST00000598202		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000540620	ENST00000337018		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000540620	ENST00000452918		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000540620	ENST00000601879		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000540620	ENST00000600377		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000540620	ENST00000456085		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-intron	ENST00000540620	ENST00000598202		ChiTaRS3.1			DA335582	WDR74	chr11	62609095	-	SUGP2	chr19	19141840	-
intron-3CDS	ENST00000331872	ENST00000331872		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000331872	ENST00000417584		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000331872	ENST00000311223		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000331872	ENST00000491322		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000331872	ENST00000339526		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000417584	ENST00000331872		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000417584	ENST00000417584		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000417584	ENST00000311223		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000417584	ENST00000491322		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000417584	ENST00000339526		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000311223	ENST00000331872		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000311223	ENST00000417584		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000311223	ENST00000311223		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000311223	ENST00000491322		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000311223	ENST00000339526		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000491322	ENST00000331872		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000491322	ENST00000417584		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000491322	ENST00000311223		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000491322	ENST00000491322		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000491322	ENST00000339526		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000339526	ENST00000331872		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000339526	ENST00000417584		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000339526	ENST00000311223		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000339526	ENST00000491322		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-5UTR	ENST00000339526	ENST00000339526		ChiTaRS3.1			AW352004	GLUL	chr1	182357735	+	GLUL	chr1	182353773	+
intron-3CDS	ENST00000400256	ENST00000400256		ChiTaRS3.1			BE929813	COLEC12	chr18	346696	+	COLEC12	chr18	333106	-
5CDS-intron	ENST00000377795	ENST00000361737		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000545242		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000546334		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000296372		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000318888		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000514025		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000447017		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000361581		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000341937		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000407564		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000505872		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000428004		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000377795	ENST00000515079		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000361737		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000545242		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000546334		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000296372		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000318888		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000514025		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000447017		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000361581		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000341937		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000407564		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000505872		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000428004		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000353334	ENST00000515079		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000361737		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000545242		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000546334		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000296372		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000318888		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000514025		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000447017		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000361581		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000341937		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000407564		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000505872		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000428004		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000524315	ENST00000515079		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000361737		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000545242		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000546334		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000296372		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000318888		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000514025		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000447017		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000361581		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000341937		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000407564		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000505872		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000428004		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
5CDS-intron	ENST00000009530	ENST00000515079		ChiTaRS3.1			DA932721	CD74	chr5	149786715	-	ABLIM2	chr4	8124745	+
In-frame	ENST00000258415	ENST00000258415		ChiTaRS3.1			BF932362	CYP27A1	chr2	219677081	+	CYP27A1	chr2	219677319	-
intron-3CDS	ENST00000432116	ENST00000300605		ChiTaRS3.1			BE771617	SHISA6	chr17	11177527	+	HDHD2	chr18	44660908	-
intron-intron	ENST00000432116	ENST00000587841		ChiTaRS3.1			BE771617	SHISA6	chr17	11177527	+	HDHD2	chr18	44660908	-
intron-3CDS	ENST00000441885	ENST00000300605		ChiTaRS3.1			BE771617	SHISA6	chr17	11177527	+	HDHD2	chr18	44660908	-
intron-intron	ENST00000441885	ENST00000587841		ChiTaRS3.1			BE771617	SHISA6	chr17	11177527	+	HDHD2	chr18	44660908	-
intron-3CDS	ENST00000409168	ENST00000300605		ChiTaRS3.1			BE771617	SHISA6	chr17	11177527	+	HDHD2	chr18	44660908	-
intron-intron	ENST00000409168	ENST00000587841		ChiTaRS3.1			BE771617	SHISA6	chr17	11177527	+	HDHD2	chr18	44660908	-
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000446906		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000377072		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000307729		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000377059		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AF272383	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000344824	ENST00000389048		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000344824	ENST00000431873		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000344824	ENST00000498037		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000538887	ENST00000389048		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000538887	ENST00000431873		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000538887	ENST00000498037		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000300933	ENST00000389048		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000300933	ENST00000431873		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000300933	ENST00000498037		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
3UTR-intron	ENST00000591645	ENST00000389048		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
3UTR-intron	ENST00000591645	ENST00000431873		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
3UTR-intron	ENST00000591645	ENST00000498037		ChiTaRS3.1			AF310722	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
intron-3CDS	ENST00000322723	ENST00000322723		ChiTaRS3.1			H43223	NCL	chr2	232323810	+	NCL	chr2	232323001	-
In-frame	ENST00000290291	ENST00000290291		ChiTaRS3.1			CN483432	OGFR	chr20	61443833	+	OGFR	chr20	61438884	+
5CDS-5UTR	ENST00000290291	ENST00000370461		ChiTaRS3.1			CN483432	OGFR	chr20	61443833	+	OGFR	chr20	61438884	+
In-frame	ENST00000370461	ENST00000290291		ChiTaRS3.1			CN483432	OGFR	chr20	61443833	+	OGFR	chr20	61438884	+
5CDS-5UTR	ENST00000370461	ENST00000370461		ChiTaRS3.1			CN483432	OGFR	chr20	61443833	+	OGFR	chr20	61438884	+
5CDS-intron	ENST00000354725	ENST00000354725		ChiTaRS3.1			BE935241	SND1	chr7	127714725	+	SND1	chr7	127569383	-
5CDS-intron	ENST00000354725	ENST00000467238		ChiTaRS3.1			BE935241	SND1	chr7	127714725	+	SND1	chr7	127569383	-
intron-intron	ENST00000467238	ENST00000354725		ChiTaRS3.1			BE935241	SND1	chr7	127714725	+	SND1	chr7	127569383	-
intron-intron	ENST00000467238	ENST00000467238		ChiTaRS3.1			BE935241	SND1	chr7	127714725	+	SND1	chr7	127569383	-
intron-5UTR	ENST00000375304	ENST00000555414		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375304	ENST00000216714		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375304	ENST00000398030		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375304	ENST00000557054		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-3UTR	ENST00000375304	ENST00000557365		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000168216	ENST00000555414		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000168216	ENST00000216714		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000168216	ENST00000398030		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000168216	ENST00000557054		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-3UTR	ENST00000168216	ENST00000557365		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375298	ENST00000555414		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375298	ENST00000216714		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375298	ENST00000398030		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000375298	ENST00000557054		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-3UTR	ENST00000375298	ENST00000557365		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000495986	ENST00000555414		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000495986	ENST00000216714		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000495986	ENST00000398030		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-5UTR	ENST00000495986	ENST00000557054		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
intron-3UTR	ENST00000495986	ENST00000557365		ChiTaRS3.1			BF756615	HSD17B10	chrX	53459321	+	APEX1	chr14	20923449	+
3UTR-intron	ENST00000424011	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000424011	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000360086	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000562707	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000361909	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000460097	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565666	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000567572	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000564060	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
3UTR-intron	ENST00000565922	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000565003	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000568477	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000347370		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000349431		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000339385		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000348298		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000400929		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000360466		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000400930		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-intron	ENST00000566121	ENST00000491779		ChiTaRS3.1			AA425266	CMTM3	chr16	66647283	+	UBE2J2	chr1	1191218	-
intron-3UTR	ENST00000419761	ENST00000238682		ChiTaRS3.1			BE835454	MKX	chr10	27993949	-	TGFB3	chr14	76424741	-
intron-intron	ENST00000419761	ENST00000556285		ChiTaRS3.1			BE835454	MKX	chr10	27993949	-	TGFB3	chr14	76424741	-
intron-intron	ENST00000419761	ENST00000556674		ChiTaRS3.1			BE835454	MKX	chr10	27993949	-	TGFB3	chr14	76424741	-
intron-3UTR	ENST00000375790	ENST00000238682		ChiTaRS3.1			BE835454	MKX	chr10	27993949	-	TGFB3	chr14	76424741	-
intron-intron	ENST00000375790	ENST00000556285		ChiTaRS3.1			BE835454	MKX	chr10	27993949	-	TGFB3	chr14	76424741	-
intron-intron	ENST00000375790	ENST00000556674		ChiTaRS3.1			BE835454	MKX	chr10	27993949	-	TGFB3	chr14	76424741	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766330	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766330	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000275605	ENST00000275605		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000275605	ENST00000395471		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000275605	ENST00000459834		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000395471	ENST00000275605		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000395471	ENST00000395471		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000395471	ENST00000459834		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000459834	ENST00000275605		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000459834	ENST00000395471		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
intron-intron	ENST00000459834	ENST00000459834		ChiTaRS3.1			BI053242	PSPH	chr7	56147710	+	PSPH	chr7	56144549	+
3UTR-3UTR	ENST00000407327	ENST00000421834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000407327	ENST00000370769		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000407327	ENST00000312431		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000407327	ENST00000370754		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000407327	ENST00000370788		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000407327	ENST00000361203		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000407327	ENST00000244364		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000407327	ENST00000446842		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000407327	ENST00000340834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000407327	ENST00000370765		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000407327	ENST00000518935		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000421834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000370769		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000312431		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000370754		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000370788		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000335757	ENST00000361203		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000244364		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000335757	ENST00000446842		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000335757	ENST00000340834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000335757	ENST00000370765		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000335757	ENST00000518935		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000421834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000370769		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000312431		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000370754		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000370788		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000586078	ENST00000361203		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000244364		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-3UTR	ENST00000586078	ENST00000446842		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000586078	ENST00000340834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000586078	ENST00000370765		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
3UTR-intron	ENST00000586078	ENST00000518935		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000421834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000370769		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000312431		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000370754		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000370788		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-intron	ENST00000588214	ENST00000361203		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000244364		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3UTR	ENST00000588214	ENST00000446842		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-intron	ENST00000588214	ENST00000340834		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-intron	ENST00000588214	ENST00000370765		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-intron	ENST00000588214	ENST00000518935		ChiTaRS3.1			BE765019	SLC44A2	chr19	10754667	-	DST	chr6	56323346	-
intron-3CDS	ENST00000223145	ENST00000381989		ChiTaRS3.1			CN407713	GLCCI1	chr7	8019573	+	PARP4	chr13	25072320	-
intron-intron	ENST00000223145	ENST00000480576		ChiTaRS3.1			CN407713	GLCCI1	chr7	8019573	+	PARP4	chr13	25072320	-
intron-3CDS	ENST00000474269	ENST00000381989		ChiTaRS3.1			CN407713	GLCCI1	chr7	8019573	+	PARP4	chr13	25072320	-
intron-intron	ENST00000474269	ENST00000480576		ChiTaRS3.1			CN407713	GLCCI1	chr7	8019573	+	PARP4	chr13	25072320	-
intron-3UTR	ENST00000291525	ENST00000291525		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-3UTR	ENST00000291525	ENST00000518498		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-5UTR	ENST00000291525	ENST00000489676		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-3UTR	ENST00000518498	ENST00000291525		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-3UTR	ENST00000518498	ENST00000518498		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-5UTR	ENST00000518498	ENST00000489676		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-3UTR	ENST00000489676	ENST00000291525		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-3UTR	ENST00000489676	ENST00000518498		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
intron-5UTR	ENST00000489676	ENST00000489676		ChiTaRS3.1			BG959789	TFF3	chr21	43733726	+	TFF3	chr21	43732327	-
In-frame	ENST00000321358	ENST00000321358		ChiTaRS3.1			BF331397	YBX1	chr1	43162615	+	YBX1	chr1	43161918	+
5CDS-3UTR	ENST00000321358	ENST00000467957		ChiTaRS3.1			BF331397	YBX1	chr1	43162615	+	YBX1	chr1	43161918	+
3UTR-3CDS	ENST00000467957	ENST00000321358		ChiTaRS3.1			BF331397	YBX1	chr1	43162615	+	YBX1	chr1	43161918	+
3UTR-3UTR	ENST00000467957	ENST00000467957		ChiTaRS3.1			BF331397	YBX1	chr1	43162615	+	YBX1	chr1	43161918	+
In-frame	ENST00000420329	ENST00000524717		ChiTaRS3.1			EU048224	CRTC3	chr15	91073435	+	MAML2	chr11	95826682	-
In-frame	ENST00000560098	ENST00000524717		ChiTaRS3.1			EU048224	CRTC3	chr15	91073435	+	MAML2	chr11	95826682	-
In-frame	ENST00000268184	ENST00000524717		ChiTaRS3.1			EU048224	CRTC3	chr15	91073435	+	MAML2	chr11	95826682	-
intron-3CDS	ENST00000558619	ENST00000524717		ChiTaRS3.1			EU048224	CRTC3	chr15	91073435	+	MAML2	chr11	95826682	-
intron-3UTR	ENST00000302631	ENST00000302631		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-3UTR	ENST00000302631	ENST00000355379		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-5UTR	ENST00000302631	ENST00000472397		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-3UTR	ENST00000355379	ENST00000302631		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-3UTR	ENST00000355379	ENST00000355379		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-5UTR	ENST00000355379	ENST00000472397		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-3UTR	ENST00000472397	ENST00000302631		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-3UTR	ENST00000472397	ENST00000355379		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
intron-5UTR	ENST00000472397	ENST00000472397		ChiTaRS3.1			AA515099	SCAMP3	chr1	155225908	+	SCAMP3	chr1	155225952	-
In-frame	ENST00000358026	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000358026	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000358026	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000344626	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000344626	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000429416	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000429416	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000541122	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000541122	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000589677	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000589677	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000444061	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000444061	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000590574	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000590574	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000413806	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000413806	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
In-frame	ENST00000450717	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
5CDS-intron	ENST00000450717	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000358026		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000344626		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000429416		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000541122		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000589677		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000444061		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000590574		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000413806		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-3CDS	ENST00000538456	ENST00000450717		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
intron-intron	ENST00000538456	ENST00000538456		ChiTaRS3.1			BF154565	SMARCA4	chr19	11121105	-	SMARCA4	chr19	11113752	+
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF272381	KMT2A	chr11	118360593	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000310926	ENST00000515359		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000310926	ENST00000308775		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000310926	ENST00000541308		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000310926	ENST00000539901		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000310926	ENST00000545947		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000310926	ENST00000538711		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-intron	ENST00000310926	ENST00000479935		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000493729	ENST00000515359		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000493729	ENST00000308775		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000493729	ENST00000541308		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000493729	ENST00000539901		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000493729	ENST00000545947		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000493729	ENST00000538711		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-intron	ENST00000493729	ENST00000479935		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000478651	ENST00000515359		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000478651	ENST00000308775		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000478651	ENST00000541308		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000478651	ENST00000539901		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000478651	ENST00000545947		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000478651	ENST00000538711		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-intron	ENST00000478651	ENST00000479935		ChiTaRS3.1			BE828796	SLCO2A1	chr3	133654710	+	DAG1	chr3	49569337	-
intron-3CDS	ENST00000445912	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000445912	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000445912	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000445912	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000445912	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000252034	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000252034	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000252034	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000252034	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000252034	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000358929	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000358929	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000358929	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000358929	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000358929	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320492	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320492	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320492	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320492	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000320492	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000414324	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000414324	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000414324	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000414324	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000414324	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380562	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380562	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380562	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380562	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000380562	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380575	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380575	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380575	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380575	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000380575	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380584	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380584	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380584	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380584	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000380584	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000458204	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000458204	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000458204	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000458204	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000458204	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000357036	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000357036	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000357036	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000357036	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000357036	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000429192	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000429192	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000429192	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000429192	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000429192	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380553	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380553	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380553	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380553	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000380553	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380576	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380576	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380576	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000380576	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000380576	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320399	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320399	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320399	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000320399	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000320399	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000466878	ENST00000382456		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000466878	ENST00000411763		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000466878	ENST00000292807		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000466878	ENST00000439647		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3UTR	ENST00000466878	ENST00000461733		ChiTaRS3.1			BQ365856	ELN	chr7	73446030	+	AP2M1	chr3	183899495	-
intron-3CDS	ENST00000417009	ENST00000216281		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000417009	ENST00000334701		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000417009	ENST00000441629		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000417009	ENST00000558600		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000444799	ENST00000216281		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000444799	ENST00000334701		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000444799	ENST00000441629		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000444799	ENST00000558600		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000413065	ENST00000216281		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000413065	ENST00000334701		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000413065	ENST00000441629		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000413065	ENST00000558600		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000248566	ENST00000216281		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000248566	ENST00000334701		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000248566	ENST00000441629		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000248566	ENST00000558600		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000493858	ENST00000216281		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000493858	ENST00000334701		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000493858	ENST00000441629		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000493858	ENST00000558600		ChiTaRS3.1			DW433664	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3UTR	ENST00000263377	ENST00000263377		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000263377	ENST00000371835		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000263377	ENST00000360016		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000263377	ENST00000602230		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-3UTR	ENST00000371835	ENST00000263377		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000371835	ENST00000371835		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000371835	ENST00000360016		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000371835	ENST00000602230		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-3UTR	ENST00000360016	ENST00000263377		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000360016	ENST00000371835		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000360016	ENST00000360016		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000360016	ENST00000602230		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-3UTR	ENST00000602230	ENST00000263377		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000602230	ENST00000371835		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000602230	ENST00000360016		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000602230	ENST00000602230		ChiTaRS3.1			AI953280	BRD4	chr19	15367867	+	BRD4	chr19	15348844	+
intron-intron	ENST00000601415	ENST00000472824		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000601415	ENST00000313146		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000601415	ENST00000368219		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000325134	ENST00000472824		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000325134	ENST00000313146		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000325134	ENST00000368219		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000457177	ENST00000472824		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000457177	ENST00000313146		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000457177	ENST00000368219		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000506609	ENST00000472824		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000506609	ENST00000313146		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-intron	ENST00000506609	ENST00000368219		ChiTaRS3.1			BQ313646	ZNF550	chr19	58071145	-	ISG20L2	chr1	156696890	-
intron-3CDS	ENST00000534307	ENST00000271526		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3CDS	ENST00000534307	ENST00000353233		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3UTR	ENST00000534307	ENST00000491853		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000528302	ENST00000271526		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000528302	ENST00000353233		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
5CDS-3UTR	ENST00000528302	ENST00000491853		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000322535	ENST00000271526		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000322535	ENST00000353233		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
5CDS-3UTR	ENST00000322535	ENST00000491853		ChiTaRS3.1			BE089930	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-intron	ENST00000376874	ENST00000371720		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000376874	ENST00000371717		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000376874	ENST00000399219		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000376874	ENST00000462616		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000340724	ENST00000371720		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000340724	ENST00000371717		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000340724	ENST00000399219		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000340724	ENST00000462616		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000544468	ENST00000371720		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000544468	ENST00000371717		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3UTR	ENST00000544468	ENST00000399219		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-intron	ENST00000544468	ENST00000462616		ChiTaRS3.1			BF155162	RILPL1	chr12	124008060	+	PMPCA	chr9	139317869	+
intron-3CDS	ENST00000548898	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000548898	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000552067	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000420846	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000548160	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000546939	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000552692	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000549117	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000257857	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000552754	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000424085		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000257075		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000373747		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000426105		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000440538		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000373741		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000423018		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000373742		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000550776	ENST00000490546		ChiTaRS3.1			BF814941	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
In-frame	ENST00000369409	ENST00000369409		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
In-frame	ENST00000369409	ENST00000369407		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
5CDS-3UTR	ENST00000369409	ENST00000482968		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
In-frame	ENST00000369407	ENST00000369409		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
In-frame	ENST00000369407	ENST00000369407		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
5CDS-3UTR	ENST00000369407	ENST00000482968		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
3UTR-3CDS	ENST00000482968	ENST00000369409		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
3UTR-3CDS	ENST00000482968	ENST00000369407		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
3UTR-3UTR	ENST00000482968	ENST00000482968		ChiTaRS3.1			BF804555	PHGDH	chr1	120284422	-	PHGDH	chr1	120285552	+
intron-intron	ENST00000309311	ENST00000571730		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000309311	ENST00000541223		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000309311	ENST00000331531		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000309311	ENST00000350690		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000309311	ENST00000545862		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000600720	ENST00000571730		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000600720	ENST00000541223		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000600720	ENST00000331531		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000600720	ENST00000350690		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
intron-intron	ENST00000600720	ENST00000545862		ChiTaRS3.1			DA998089	EEF2	chr19	3984161	-	SLC25A10	chr17	79679488	+
3UTR-3CDS	ENST00000326446	ENST00000242783		ChiTaRS3.1			DB012755	ARL6IP6	chr2	153616599	+	PKN1	chr19	14552198	+
3UTR-3UTR	ENST00000326446	ENST00000587429		ChiTaRS3.1			DB012755	ARL6IP6	chr2	153616599	+	PKN1	chr19	14552198	+
3UTR-3UTR	ENST00000326446	ENST00000342216		ChiTaRS3.1			DB012755	ARL6IP6	chr2	153616599	+	PKN1	chr19	14552198	+
3UTR-3CDS	ENST00000463690	ENST00000242783		ChiTaRS3.1			DB012755	ARL6IP6	chr2	153616599	+	PKN1	chr19	14552198	+
3UTR-3UTR	ENST00000463690	ENST00000587429		ChiTaRS3.1			DB012755	ARL6IP6	chr2	153616599	+	PKN1	chr19	14552198	+
3UTR-3UTR	ENST00000463690	ENST00000342216		ChiTaRS3.1			DB012755	ARL6IP6	chr2	153616599	+	PKN1	chr19	14552198	+
intron-5UTR	ENST00000438316	ENST00000438316		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000438316	ENST00000466508		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000438316	ENST00000055335		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000438316	ENST00000495799		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000438316	ENST00000376188		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000466508	ENST00000438316		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000466508	ENST00000466508		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000466508	ENST00000055335		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000466508	ENST00000495799		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000466508	ENST00000376188		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
5CDS-5UTR	ENST00000055335	ENST00000438316		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
5CDS-5UTR	ENST00000055335	ENST00000466508		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
5CDS-5UTR	ENST00000055335	ENST00000055335		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
5CDS-intron	ENST00000055335	ENST00000495799		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
5CDS-intron	ENST00000055335	ENST00000376188		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000495799	ENST00000438316		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000495799	ENST00000466508		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000495799	ENST00000055335		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000495799	ENST00000495799		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000495799	ENST00000376188		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000376188	ENST00000438316		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000376188	ENST00000466508		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-5UTR	ENST00000376188	ENST00000055335		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000376188	ENST00000495799		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000376188	ENST00000376188		ChiTaRS3.1			AI457539	PPP1R3F	chrX	49126907	-	PPP1R3F	chrX	49127116	+
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			BG991500	BOLA2	chr16	30080897	+	BOLA2	chr16	30080678	-
In-frame	ENST00000378993	ENST00000378707		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000378993	ENST00000359836		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000378993	ENST00000541735		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000378993	ENST00000343523		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000378993	ENST00000378677		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000378993	ENST00000357033		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000378993	ENST00000474231		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000378993	ENST00000378723		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000378993	ENST00000378702		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000378993	ENST00000361471		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000378993	ENST00000378680		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000378993	ENST00000288447		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000378993	ENST00000445312		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000378707		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000359836		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000541735		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000343523		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000378677		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000357033		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
In-frame	ENST00000302196	ENST00000474231		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000302196	ENST00000378723		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000302196	ENST00000378702		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000302196	ENST00000361471		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000302196	ENST00000378680		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000302196	ENST00000288447		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
5CDS-intron	ENST00000302196	ENST00000445312		ChiTaRS3.1			AF533682	IL1RAPL1	chrX	29417425	+	DMD	chrX	31697705	-
intron-3CDS	ENST00000289968	ENST00000589123		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000346156		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000395111		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000586919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000341919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000590282		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000289968	ENST00000443272		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000289968	ENST00000588839		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000589123		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000346156		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000395111		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000586919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000341919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000590282		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000441763	ENST00000443272		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000441763	ENST00000588839		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000589123		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000346156		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000395111		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000586919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000341919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000590282		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000303665	ENST00000443272		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000303665	ENST00000588839		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000589123		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000346156		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000395111		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000586919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000341919		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000590282		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-3CDS	ENST00000575975	ENST00000443272		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000575975	ENST00000588839		ChiTaRS3.1			BF946375	ARHGAP17	chr16	24942686	+	NFIC	chr19	3452590	-
intron-intron	ENST00000421587	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000421587	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000318588	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000361962	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378163	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378158	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378166	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000442742	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000472704	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000421587		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000318588		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000361962		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000378163		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000378158		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000378166		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000442742		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000472704		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-intron	ENST00000378154	ENST00000378154		ChiTaRS3.1			BI062469	CASK	chrX	41530785	+	CASK	chrX	41519692	+
intron-3CDS	ENST00000377705	ENST00000599117		ChiTaRS3.1			BF825716	NOL9	chr1	6592107	+	SUPT5H	chr19	39960799	+
intron-3CDS	ENST00000377705	ENST00000432763		ChiTaRS3.1			BF825716	NOL9	chr1	6592107	+	SUPT5H	chr19	39960799	+
intron-3CDS	ENST00000377705	ENST00000402194		ChiTaRS3.1			BF825716	NOL9	chr1	6592107	+	SUPT5H	chr19	39960799	+
intron-3CDS	ENST00000377705	ENST00000359191		ChiTaRS3.1			BF825716	NOL9	chr1	6592107	+	SUPT5H	chr19	39960799	+
intron-3CDS	ENST00000377705	ENST00000598725		ChiTaRS3.1			BF825716	NOL9	chr1	6592107	+	SUPT5H	chr19	39960799	+
5CDS-intron	ENST00000356239	ENST00000392825		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000356239	ENST00000409237		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000356239	ENST00000487047		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000358100	ENST00000392825		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000358100	ENST00000409237		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000358100	ENST00000487047		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000359028	ENST00000392825		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000359028	ENST00000409237		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000359028	ENST00000487047		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
intron-intron	ENST00000394564	ENST00000392825		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
intron-intron	ENST00000394564	ENST00000409237		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
intron-intron	ENST00000394564	ENST00000487047		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
intron-intron	ENST00000491695	ENST00000392825		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
intron-intron	ENST00000491695	ENST00000409237		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
intron-intron	ENST00000491695	ENST00000487047		ChiTaRS3.1			BM931973	AKAP9	chr7	91726102	+	GALNT13	chr2	155004416	-
5CDS-intron	ENST00000518852	ENST00000327040		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000518852	ENST00000440756		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000518852	ENST00000286485		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000518852	ENST00000428502		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000518852	ENST00000523619		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000518852	ENST00000520789		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000240139	ENST00000327040		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000240139	ENST00000440756		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000240139	ENST00000286485		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000240139	ENST00000428502		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000240139	ENST00000523619		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000240139	ENST00000520789		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000289963	ENST00000327040		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000289963	ENST00000440756		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000289963	ENST00000286485		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000289963	ENST00000428502		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000289963	ENST00000523619		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000289963	ENST00000520789		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000397775	ENST00000327040		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000397775	ENST00000440756		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000397775	ENST00000286485		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000397775	ENST00000428502		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000397775	ENST00000523619		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-intron	ENST00000397775	ENST00000520789		ChiTaRS3.1			BF512520	PPP3CC	chr8	22298971	+	PSD3	chr8	18662415	-
5CDS-3UTR	ENST00000006777	ENST00000006777		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5CDS-3UTR	ENST00000006777	ENST00000318622		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5CDS-intron	ENST00000006777	ENST00000468304		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5CDS-3UTR	ENST00000006777	ENST00000428119		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5UTR-3UTR	ENST00000318622	ENST00000006777		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5UTR-3UTR	ENST00000318622	ENST00000318622		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5UTR-intron	ENST00000318622	ENST00000468304		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
5UTR-3UTR	ENST00000318622	ENST00000428119		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000468304	ENST00000006777		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000468304	ENST00000318622		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-intron	ENST00000468304	ENST00000468304		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000468304	ENST00000428119		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000428119	ENST00000006777		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000428119	ENST00000318622		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-intron	ENST00000428119	ENST00000468304		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000428119	ENST00000428119		ChiTaRS3.1			BE936323	RHBDD2	chr7	75511257	-	RHBDD2	chr7	75518055	-
intron-3UTR	ENST00000220597	ENST00000220597		ChiTaRS3.1			AW401639	PAG1	chr8	81884696	-	PAG1	chr8	81886501	-
intron-intron	ENST00000220597	ENST00000523463		ChiTaRS3.1			AW401639	PAG1	chr8	81884696	-	PAG1	chr8	81886501	-
intron-3UTR	ENST00000523463	ENST00000220597		ChiTaRS3.1			AW401639	PAG1	chr8	81884696	-	PAG1	chr8	81886501	-
intron-intron	ENST00000523463	ENST00000523463		ChiTaRS3.1			AW401639	PAG1	chr8	81884696	-	PAG1	chr8	81886501	-
intron-intron	ENST00000402738	ENST00000275605		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000402738	ENST00000395471		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000402738	ENST00000459834		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000407637	ENST00000275605		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000407637	ENST00000395471		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000407637	ENST00000459834		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000601319	ENST00000275605		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000601319	ENST00000395471		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000601319	ENST00000459834		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000264345	ENST00000275605		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000264345	ENST00000395471		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000264345	ENST00000459834		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000543130	ENST00000275605		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000543130	ENST00000395471		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
intron-intron	ENST00000543130	ENST00000459834		ChiTaRS3.1			DC340871	HERC3	chr4	89606033	-	PSPH	chr7	56131998	+
5CDS-intron	ENST00000406590	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000406590	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000406590	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000570646	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000570646	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000570646	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000458134	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000458134	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000458134	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000219700	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000219700	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000219700	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000575120	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000575120	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000575120	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
intron-intron	ENST00000574594	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
intron-intron	ENST00000574594	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
intron-intron	ENST00000574594	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000398595	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000398595	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000398595	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000414777	ENST00000220592		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000414777	ENST00000519980		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
5CDS-intron	ENST00000414777	ENST00000517293		ChiTaRS3.1			BE699957	HMOX2	chr16	4557946	+	AGO2	chr8	141643602	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766260	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766260	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000271651	ENST00000271651		ChiTaRS3.1			BQ363336	CTSK	chr1	150769179	-	CTSK	chr1	150771736	-
intron-intron	ENST00000271651	ENST00000480670		ChiTaRS3.1			BQ363336	CTSK	chr1	150769179	-	CTSK	chr1	150771736	-
intron-3CDS	ENST00000480670	ENST00000271651		ChiTaRS3.1			BQ363336	CTSK	chr1	150769179	-	CTSK	chr1	150771736	-
intron-intron	ENST00000480670	ENST00000480670		ChiTaRS3.1			BQ363336	CTSK	chr1	150769179	-	CTSK	chr1	150771736	-
5CDS-intron	ENST00000328908	ENST00000327495		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5CDS-intron	ENST00000328908	ENST00000595140		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5CDS-intron	ENST00000328908	ENST00000490592		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5CDS-intron	ENST00000397588	ENST00000327495		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5CDS-intron	ENST00000397588	ENST00000595140		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5CDS-intron	ENST00000397588	ENST00000490592		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
intron-intron	ENST00000472453	ENST00000327495		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
intron-intron	ENST00000472453	ENST00000595140		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
intron-intron	ENST00000472453	ENST00000490592		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5UTR-intron	ENST00000449732	ENST00000327495		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5UTR-intron	ENST00000449732	ENST00000595140		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5UTR-intron	ENST00000449732	ENST00000490592		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5UTR-intron	ENST00000343762	ENST00000327495		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5UTR-intron	ENST00000343762	ENST00000595140		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
5UTR-intron	ENST00000343762	ENST00000490592		ChiTaRS3.1			BF368907	CDYL	chr6	4892250	+	PSG3	chr19	43227848	-
intron-3UTR	ENST00000260665	ENST00000370818		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-3UTR	ENST00000260665	ENST00000394299		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-intron	ENST00000260665	ENST00000543339		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-3UTR	ENST00000409946	ENST00000370818		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-3UTR	ENST00000409946	ENST00000394299		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-intron	ENST00000409946	ENST00000543339		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-3UTR	ENST00000409659	ENST00000370818		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-3UTR	ENST00000409659	ENST00000394299		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-intron	ENST00000409659	ENST00000543339		ChiTaRS3.1			BI905820	LRPPRC	chr2	44209547	-	GPC3	chrX	132669958	-
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BQ331268	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-3CDS	ENST00000225964	ENST00000225964		ChiTaRS3.1			AA852533	COL1A1	chr17	48276624	+	COL1A1	chr17	48275548	-
In-frame	ENST00000194152	ENST00000194152		ChiTaRS3.1			BQ319780	PCDHB4	chr5	140502727	-	PCDHB4	chr5	140502612	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766259	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766259	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
5CDS-3UTR	ENST00000303210	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000303210		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000436220		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000424361		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000419828		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000427895		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000393926		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000393924		ChiTaRS3.1			BQ326075	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
intron-3UTR	ENST00000301187	ENST00000372097		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000301187	ENST00000372095		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000301187	ENST00000372099		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000301187	ENST00000372108		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000301187	ENST00000342018		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000301187	ENST00000485692		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000416963	ENST00000372097		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000416963	ENST00000372095		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000416963	ENST00000372099		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000416963	ENST00000372108		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000416963	ENST00000342018		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000416963	ENST00000485692		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000376591	ENST00000372097		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000376591	ENST00000372095		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000376591	ENST00000372099		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000376591	ENST00000372108		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000376591	ENST00000342018		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000376591	ENST00000485692		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000476013	ENST00000372097		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000476013	ENST00000372095		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000476013	ENST00000372099		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000476013	ENST00000372108		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3UTR	ENST00000476013	ENST00000342018		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-intron	ENST00000476013	ENST00000485692		ChiTaRS3.1			BE707838	TMC4	chr19	54673363	+	GTF3C5	chr9	135933814	-
intron-3CDS	ENST00000162330	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000162330	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000162330	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000546196	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000546196	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000546196	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000566982	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000566982	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000566982	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000393422	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000393422	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393422	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000535626	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000535626	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000535626	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000538440	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000538440	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000538440	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000418647	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000418647	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000418647	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000542031	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000542031	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000542031	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000420641	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000420641	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000420641	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000393420	ENST00000162330		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-3CDS	ENST00000393420	ENST00000546196		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000566982		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000393422		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000535626		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000538440		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000418647		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000542031		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000420641		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
intron-5UTR	ENST00000393420	ENST00000393420		ChiTaRS3.1			CN484144	BCAR1	chr16	75263698	-	BCAR1	chr16	75269805	-
5CDS-5UTR	ENST00000534358	ENST00000556508		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000534358	ENST00000453495		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000534358	ENST00000414716		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000534358	ENST00000418279		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000389506	ENST00000556508		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000389506	ENST00000453495		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000389506	ENST00000414716		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000389506	ENST00000418279		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000354520	ENST00000556508		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000354520	ENST00000453495		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000354520	ENST00000414716		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-5UTR	ENST00000354520	ENST00000418279		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
intron-5UTR	ENST00000420751	ENST00000556508		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
intron-5UTR	ENST00000420751	ENST00000453495		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
intron-5UTR	ENST00000420751	ENST00000414716		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
intron-5UTR	ENST00000420751	ENST00000418279		ChiTaRS3.1			AM422012	KMT2A	chr11	118353210	+	CEP170B	chr14	105344220	+
5CDS-intron	ENST00000421745	ENST00000400256		ChiTaRS3.1			BQ366475	BIRC6	chr2	32689740	-	COLEC12	chr18	408432	-
Frame-shit	ENST00000329542	ENST00000329542		ChiTaRS3.1			AA985241	UNC5A	chr5	176301414	-	UNC5A	chr5	176305529	-
Frame-shit	ENST00000329542	ENST00000261961		ChiTaRS3.1			AA985241	UNC5A	chr5	176301414	-	UNC5A	chr5	176305529	-
Frame-shit	ENST00000261961	ENST00000329542		ChiTaRS3.1			AA985241	UNC5A	chr5	176301414	-	UNC5A	chr5	176305529	-
Frame-shit	ENST00000261961	ENST00000261961		ChiTaRS3.1			AA985241	UNC5A	chr5	176301414	-	UNC5A	chr5	176305529	-
intron-3CDS	ENST00000329138	ENST00000431843		ChiTaRS3.1			BF509241	HGS	chr17	79657208	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000397632		ChiTaRS3.1			BF509241	HGS	chr17	79657208	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000332725		ChiTaRS3.1			BF509241	HGS	chr17	79657208	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000531205		ChiTaRS3.1			BF509241	HGS	chr17	79657208	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000382520		ChiTaRS3.1			BF509241	HGS	chr17	79657208	-	SIGIRR	chr11	407854	+
intron-5UTR	ENST00000329138	ENST00000529486		ChiTaRS3.1			BF509241	HGS	chr17	79657208	-	SIGIRR	chr11	407854	+
intron-3UTR	ENST00000380394	ENST00000555004		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000380394	ENST00000556728		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000380394	ENST00000421193		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-3UTR	ENST00000498815	ENST00000555004		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000498815	ENST00000556728		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000498815	ENST00000421193		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-3UTR	ENST00000380384	ENST00000555004		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000380384	ENST00000556728		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000380384	ENST00000421193		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-3UTR	ENST00000315377	ENST00000555004		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000315377	ENST00000556728		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000315377	ENST00000421193		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-3UTR	ENST00000380381	ENST00000555004		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000380381	ENST00000556728		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
intron-intron	ENST00000380381	ENST00000421193		ChiTaRS3.1			BE257666	RPS6	chr9	19376628	-	C14orf132	chr14	96558852	+
3UTR-5UTR	ENST00000006251	ENST00000373840		ChiTaRS3.1			AW452770	PRR5	chr22	45133403	-	RAB14	chr9	123963949	+
3UTR-5UTR	ENST00000403581	ENST00000373840		ChiTaRS3.1			AW452770	PRR5	chr22	45133403	-	RAB14	chr9	123963949	+
3UTR-5UTR	ENST00000336985	ENST00000373840		ChiTaRS3.1			AW452770	PRR5	chr22	45133403	-	RAB14	chr9	123963949	+
intron-5UTR	ENST00000477331	ENST00000373840		ChiTaRS3.1			AW452770	PRR5	chr22	45133403	-	RAB14	chr9	123963949	+
intron-3CDS	ENST00000241052	ENST00000440884		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000416682		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000429436		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000303622		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000216288		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000553942		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000335102		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000241052	ENST00000561071		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000440884		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000416682		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000429436		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000303622		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000216288		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000553942		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000335102		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000534710	ENST00000561071		ChiTaRS3.1			BI024383	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
Frame-shit	ENST00000278070	ENST00000278070		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
Frame-shit	ENST00000278070	ENST00000413464		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
5CDS-intron	ENST00000278070	ENST00000370012		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
5CDS-intron	ENST00000278070	ENST00000489648		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
Frame-shit	ENST00000413464	ENST00000278070		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
Frame-shit	ENST00000413464	ENST00000413464		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
5CDS-intron	ENST00000413464	ENST00000370012		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
5CDS-intron	ENST00000413464	ENST00000489648		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-3CDS	ENST00000370012	ENST00000278070		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-3CDS	ENST00000370012	ENST00000413464		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-intron	ENST00000370012	ENST00000370012		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-intron	ENST00000370012	ENST00000489648		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-3CDS	ENST00000489648	ENST00000278070		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-3CDS	ENST00000489648	ENST00000413464		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-intron	ENST00000489648	ENST00000370012		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
intron-intron	ENST00000489648	ENST00000489648		ChiTaRS3.1			BF849658	PPRC1	chr10	103900215	-	PPRC1	chr10	103898377	+
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000446906		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000377072		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000307729		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000377059		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AF272385	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000335295	ENST00000413916		ChiTaRS3.1			DA941422	HBB	chr11	5247851	-	ZMIZ2	chr7	44804764	+
intron-intron	ENST00000335295	ENST00000309315		ChiTaRS3.1			DA941422	HBB	chr11	5247851	-	ZMIZ2	chr7	44804764	+
intron-intron	ENST00000335295	ENST00000441627		ChiTaRS3.1			DA941422	HBB	chr11	5247851	-	ZMIZ2	chr7	44804764	+
intron-intron	ENST00000335295	ENST00000433667		ChiTaRS3.1			DA941422	HBB	chr11	5247851	-	ZMIZ2	chr7	44804764	+
intron-intron	ENST00000335295	ENST00000265346		ChiTaRS3.1			DA941422	HBB	chr11	5247851	-	ZMIZ2	chr7	44804764	+
intron-intron	ENST00000335295	ENST00000463931		ChiTaRS3.1			DA941422	HBB	chr11	5247851	-	ZMIZ2	chr7	44804764	+
intron-3CDS	ENST00000399951	ENST00000399951		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-3CDS	ENST00000399951	ENST00000399953		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-5UTR	ENST00000399951	ENST00000405960		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-3CDS	ENST00000399953	ENST00000399951		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-3CDS	ENST00000399953	ENST00000399953		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-5UTR	ENST00000399953	ENST00000405960		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-3CDS	ENST00000405960	ENST00000399951		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-3CDS	ENST00000405960	ENST00000399953		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
intron-5UTR	ENST00000405960	ENST00000405960		ChiTaRS3.1			EL583700	NPRL3	chr16	139827	+	NPRL3	chr16	143291	-
Frame-shit	ENST00000539857	ENST00000374866		ChiTaRS3.1			BE695574	ENGASE	chr17	77078020	-	COL5A2	chr2	189898814	-
Frame-shit	ENST00000579016	ENST00000374866		ChiTaRS3.1			BE695574	ENGASE	chr17	77078020	-	COL5A2	chr2	189898814	-
intron-3CDS	ENST00000584568	ENST00000374866		ChiTaRS3.1			BE695574	ENGASE	chr17	77078020	-	COL5A2	chr2	189898814	-
intron-3CDS	ENST00000275605	ENST00000508802		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000275605	ENST00000261439		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000275605	ENST00000402522		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000275605	ENST00000407365		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-3CDS	ENST00000395471	ENST00000508802		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000395471	ENST00000261439		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000395471	ENST00000402522		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000395471	ENST00000407365		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-3CDS	ENST00000459834	ENST00000508802		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000459834	ENST00000261439		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000459834	ENST00000402522		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
intron-intron	ENST00000459834	ENST00000407365		ChiTaRS3.1			BF771965	PSPH	chr7	56144489	-	TBC1D1	chr4	38053590	-
5CDS-intron	ENST00000532097	ENST00000446912		ChiTaRS3.1			BX103504	PSMD13	chr11	244761	+	FAM157B	chr9	141131540	-
5CDS-intron	ENST00000431206	ENST00000446912		ChiTaRS3.1			BX103504	PSMD13	chr11	244761	+	FAM157B	chr9	141131540	-
5CDS-intron	ENST00000352303	ENST00000446912		ChiTaRS3.1			BX103504	PSMD13	chr11	244761	+	FAM157B	chr9	141131540	-
intron-intron	ENST00000532025	ENST00000446912		ChiTaRS3.1			BX103504	PSMD13	chr11	244761	+	FAM157B	chr9	141131540	-
intron-intron	ENST00000221801	ENST00000390394		ChiTaRS3.1			CK904540	FBL	chr19	40330928	-	TRBV20-1	chr7	142482370	+
intron-intron	ENST00000593503	ENST00000390394		ChiTaRS3.1			CK904540	FBL	chr19	40330928	-	TRBV20-1	chr7	142482370	+
intron-3CDS	ENST00000453654	ENST00000264111		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000453654	ENST00000397081		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000409036		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000397087		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000538974		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000540783		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000539331		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000473043		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000453654	ENST00000535187		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000288490	ENST00000264111		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000288490	ENST00000397081		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000409036		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000397087		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000538974		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000540783		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000539331		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000473043		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000288490	ENST00000535187		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000424189	ENST00000264111		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000424189	ENST00000397081		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000409036		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000397087		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000538974		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000540783		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000539331		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000473043		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000424189	ENST00000535187		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000446122	ENST00000264111		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000446122	ENST00000397081		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000409036		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000397087		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000538974		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000540783		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000539331		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000473043		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000446122	ENST00000535187		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000494390	ENST00000264111		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-3CDS	ENST00000494390	ENST00000397081		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000409036		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000397087		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000538974		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000540783		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000539331		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000473043		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
intron-intron	ENST00000494390	ENST00000535187		ChiTaRS3.1			BF962288	DGKI	chr7	137466791	-	RAPGEF4	chr2	173901377	+
Frame-shit	ENST00000377351	ENST00000561294		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000377351	ENST00000345896		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000377351	ENST00000271688		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000377351	ENST00000368954		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
Frame-shit	ENST00000335972	ENST00000561294		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000335972	ENST00000345896		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000335972	ENST00000271688		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000335972	ENST00000368954		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
intron-3CDS	ENST00000490869	ENST00000561294		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
intron-5UTR	ENST00000490869	ENST00000345896		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
intron-5UTR	ENST00000490869	ENST00000271688		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
intron-5UTR	ENST00000490869	ENST00000368954		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
Frame-shit	ENST00000377269	ENST00000561294		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000377269	ENST00000345896		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000377269	ENST00000271688		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
5CDS-5UTR	ENST00000377269	ENST00000368954		ChiTaRS3.1			BE075844	UBA1	chrX	47072532	-	CERS2	chr1	150939052	+
intron-intron	ENST00000400921	ENST00000526054		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400921	ENST00000529182		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400921	ENST00000377348		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400921	ENST00000292510		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400921	ENST00000526734		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400920	ENST00000526054		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400920	ENST00000529182		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400920	ENST00000377348		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400920	ENST00000292510		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000400920	ENST00000526734		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000479263	ENST00000526054		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000479263	ENST00000529182		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000479263	ENST00000377348		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000479263	ENST00000292510		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
intron-intron	ENST00000479263	ENST00000526734		ChiTaRS3.1			BQ370519	PRKCZ	chr1	2039926	-	VPS28	chr8	145651547	+
In-frame	ENST00000322536	ENST00000324932		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000322536	ENST00000359171		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000322536	ENST00000355260		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000322536	ENST00000397004		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000322536	ENST00000397007		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
5CDS-intron	ENST00000322536	ENST00000488828		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000526794	ENST00000324932		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000526794	ENST00000359171		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000526794	ENST00000355260		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000526794	ENST00000397004		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
In-frame	ENST00000526794	ENST00000397007		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
5CDS-intron	ENST00000526794	ENST00000488828		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-3CDS	ENST00000534221	ENST00000324932		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-3CDS	ENST00000534221	ENST00000359171		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-3CDS	ENST00000534221	ENST00000355260		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-3CDS	ENST00000534221	ENST00000397004		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-3CDS	ENST00000534221	ENST00000397007		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-intron	ENST00000534221	ENST00000488828		ChiTaRS3.1			AB001343	DDX10	chr11	108550288	+	NUP98	chr11	3746454	-
intron-intron	ENST00000585832	ENST00000267615		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000354313		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000556603		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000555495		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000585832	ENST00000556954		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000267615		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000354313		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000556603		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000555495		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-intron	ENST00000600215	ENST00000556954		ChiTaRS3.1			AI075181	CIRBP-AS1	chr19	1259914	-	ITPK1	chr14	93428951	+
intron-3UTR	ENST00000374436	ENST00000374436		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374436	ENST00000374443		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374436	ENST00000374450		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-intron	ENST00000374436	ENST00000462894		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374443	ENST00000374436		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374443	ENST00000374443		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374443	ENST00000374450		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-intron	ENST00000374443	ENST00000462894		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374450	ENST00000374436		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374450	ENST00000374443		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000374450	ENST00000374450		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-intron	ENST00000374450	ENST00000462894		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000462894	ENST00000374436		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000462894	ENST00000374443		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3UTR	ENST00000462894	ENST00000374450		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-intron	ENST00000462894	ENST00000462894		ChiTaRS3.1			BG951220	EIF6	chr20	33867465	+	EIF6	chr20	33866812	-
intron-3CDS	ENST00000329214	ENST00000329214		ChiTaRS3.1			BE464127	CCDC137	chr17	79637252	-	CCDC137	chr17	79639729	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			DQ083945	IGHG1	chr14	106058009	-	IGHG1	chr14	106322325	-
intron-3CDS	ENST00000597960	ENST00000296149		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000597960	ENST00000446787		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000597960	ENST00000439305		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000597960	ENST00000460502		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000610101	ENST00000296149		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000610101	ENST00000446787		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000610101	ENST00000439305		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000610101	ENST00000460502		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000596558	ENST00000296149		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000596558	ENST00000446787		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000596558	ENST00000439305		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000596558	ENST00000460502		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000222308	ENST00000296149		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000222308	ENST00000446787		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000222308	ENST00000439305		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000222308	ENST00000460502		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000608443	ENST00000296149		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000608443	ENST00000446787		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000608443	ENST00000439305		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000608443	ENST00000460502		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000453489	ENST00000296149		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000453489	ENST00000446787		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-3CDS	ENST00000453489	ENST00000439305		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000453489	ENST00000460502		ChiTaRS3.1			AI651689	FKBP8	chr19	18652632	-	ELP6	chr3	47543218	-
intron-intron	ENST00000531120	ENST00000331817		ChiTaRS3.1			BG002942	EIF3M	chr11	32616166	-	KRT7	chr12	52637084	-
intron-intron	ENST00000531120	ENST00000552322		ChiTaRS3.1			BG002942	EIF3M	chr11	32616166	-	KRT7	chr12	52637084	-
intron-intron	ENST00000524896	ENST00000331817		ChiTaRS3.1			BG002942	EIF3M	chr11	32616166	-	KRT7	chr12	52637084	-
intron-intron	ENST00000524896	ENST00000552322		ChiTaRS3.1			BG002942	EIF3M	chr11	32616166	-	KRT7	chr12	52637084	-
intron-intron	ENST00000532054	ENST00000331817		ChiTaRS3.1			BG002942	EIF3M	chr11	32616166	-	KRT7	chr12	52637084	-
intron-intron	ENST00000532054	ENST00000552322		ChiTaRS3.1			BG002942	EIF3M	chr11	32616166	-	KRT7	chr12	52637084	-
intron-intron	ENST00000221419	ENST00000221419		ChiTaRS3.1			BQ343301	HNRNPL	chr19	39333350	-	HNRNPL	chr19	39333330	+
intron-intron	ENST00000221419	ENST00000600873		ChiTaRS3.1			BQ343301	HNRNPL	chr19	39333350	-	HNRNPL	chr19	39333330	+
intron-intron	ENST00000600873	ENST00000221419		ChiTaRS3.1			BQ343301	HNRNPL	chr19	39333350	-	HNRNPL	chr19	39333330	+
intron-intron	ENST00000600873	ENST00000600873		ChiTaRS3.1			BQ343301	HNRNPL	chr19	39333350	-	HNRNPL	chr19	39333330	+
intron-3CDS	ENST00000513610	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000513610	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000513610	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000513610	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000513610	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000513610	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000513610	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3CDS	ENST00000507288	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000507288	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000507288	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000507288	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000507288	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000507288	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000507288	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3CDS	ENST00000274203	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000274203	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000274203	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000274203	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000274203	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000274203	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000274203	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3CDS	ENST00000515803	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000515803	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000515803	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000515803	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000515803	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000515803	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000515803	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3CDS	ENST00000427430	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000427430	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000427430	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000427430	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000427430	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000427430	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000427430	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3CDS	ENST00000505695	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000505695	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000505695	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000505695	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000505695	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000505695	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000505695	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3CDS	ENST00000512061	ENST00000513610		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000512061	ENST00000507288		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000512061	ENST00000274203		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000512061	ENST00000515803		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000512061	ENST00000427430		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000512061	ENST00000505695		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-intron	ENST00000512061	ENST00000512061		ChiTaRS3.1			AI049686	MYO10	chr5	16703201	+	MYO10	chr5	16701706	+
intron-3UTR	ENST00000310144	ENST00000317276		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000310144	ENST00000581082		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000310144	ENST00000578089		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000310144	ENST00000354903		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000582420	ENST00000317276		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000582420	ENST00000581082		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000582420	ENST00000578089		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000582420	ENST00000354903		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000580864	ENST00000317276		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000580864	ENST00000581082		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000580864	ENST00000578089		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000580864	ENST00000354903		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000375812	ENST00000317276		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000375812	ENST00000581082		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000375812	ENST00000578089		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000375812	ENST00000354903		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000581882	ENST00000317276		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-3UTR	ENST00000581882	ENST00000581082		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000581882	ENST00000578089		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000581882	ENST00000354903		ChiTaRS3.1			BF948995	PSMC5	chr17	61908827	+	PER1	chr17	8043945	-
intron-intron	ENST00000540235	ENST00000540235		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
intron-3UTR	ENST00000540235	ENST00000393930		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
intron-3UTR	ENST00000540235	ENST00000393931		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
intron-3UTR	ENST00000540235	ENST00000310706		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-intron	ENST00000393930	ENST00000540235		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393930	ENST00000393930		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393930	ENST00000393931		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393930	ENST00000310706		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-intron	ENST00000393931	ENST00000540235		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393931	ENST00000393930		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393931	ENST00000393931		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000393931	ENST00000310706		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-intron	ENST00000310706	ENST00000540235		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000310706	ENST00000393930		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000310706	ENST00000393931		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-3UTR	ENST00000310706	ENST00000310706		ChiTaRS3.1			BI058838	JUP	chr17	39913666	-	JUP	chr17	39911397	+
5CDS-5UTR	ENST00000344691	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000344691	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000344691	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000344691	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000344691	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000344691	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000344691	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000344691	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000325074	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000325074	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000325074	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000325074	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000325074	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000325074	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000325074	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000325074	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000437180	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000437180	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000437180	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000437180	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000437180	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000437180	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000437180	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000437180	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000300305	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000300305	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000300305	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000300305	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000300305	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000300305	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000300305	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000300305	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000399240	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000399240	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000399240	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000399240	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-intron	ENST00000399240	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000399240	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-intron	ENST00000399240	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000399240	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000486278	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000486278	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000486278	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000486278	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-intron	ENST00000486278	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000486278	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-intron	ENST00000486278	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000486278	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000494829	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000494829	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000494829	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000494829	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-intron	ENST00000494829	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000494829	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-intron	ENST00000494829	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
intron-5UTR	ENST00000494829	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000358356	ENST00000409598		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000358356	ENST00000424281		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000358356	ENST00000304527		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000358356	ENST00000455740		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000358356	ENST00000409252		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000358356	ENST00000514152		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-intron	ENST00000358356	ENST00000427414		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
5CDS-5UTR	ENST00000358356	ENST00000604030		ChiTaRS3.1			EU093087	RUNX1	chr21	36206707	-	SH3D19	chr4	152147239	-
3UTR-3CDS	ENST00000265062	ENST00000340811		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-3CDS	ENST00000265062	ENST00000070846		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-intron	ENST00000265062	ENST00000546741		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-3CDS	ENST00000482525	ENST00000340811		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-3CDS	ENST00000482525	ENST00000070846		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-intron	ENST00000482525	ENST00000546741		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-3CDS	ENST00000485280	ENST00000340811		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-3CDS	ENST00000485280	ENST00000070846		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
3UTR-intron	ENST00000485280	ENST00000546741		ChiTaRS3.1			AW361905	RAB7A	chr3	128532328	+	PKP2	chr12	32945661	-
intron-3CDS	ENST00000394789	ENST00000266688		ChiTaRS3.1			EG327603	SLC9B1	chr4	103814571	+	PTPRQ	chr12	81067001	+
intron-intron	ENST00000394789	ENST00000547485		ChiTaRS3.1			EG327603	SLC9B1	chr4	103814571	+	PTPRQ	chr12	81067001	+
intron-3CDS	ENST00000296422	ENST00000266688		ChiTaRS3.1			EG327603	SLC9B1	chr4	103814571	+	PTPRQ	chr12	81067001	+
intron-intron	ENST00000296422	ENST00000547485		ChiTaRS3.1			EG327603	SLC9B1	chr4	103814571	+	PTPRQ	chr12	81067001	+
intron-3CDS	ENST00000512651	ENST00000266688		ChiTaRS3.1			EG327603	SLC9B1	chr4	103814571	+	PTPRQ	chr12	81067001	+
intron-intron	ENST00000512651	ENST00000547485		ChiTaRS3.1			EG327603	SLC9B1	chr4	103814571	+	PTPRQ	chr12	81067001	+
intron-3CDS	ENST00000560580	ENST00000299767		ChiTaRS3.1			AW842590	GCNT3	chr15	59910926	-	HSP90B1	chr12	104336928	-
In-frame	ENST00000560585	ENST00000299767		ChiTaRS3.1			AW842590	GCNT3	chr15	59910926	-	HSP90B1	chr12	104336928	-
In-frame	ENST00000396065	ENST00000299767		ChiTaRS3.1			AW842590	GCNT3	chr15	59910926	-	HSP90B1	chr12	104336928	-
intron-3CDS	ENST00000394936	ENST00000218758		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394936	ENST00000412435		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394936	ENST00000592828		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394936	ENST00000433365		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394936	ENST00000590420		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394934	ENST00000218758		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394934	ENST00000412435		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394934	ENST00000592828		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394934	ENST00000433365		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-3CDS	ENST00000394934	ENST00000590420		ChiTaRS3.1			AW608479	PSAP	chr10	73587814	-	ACP5	chr19	11688133	-
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			CV321680	BOLA2	chr16	30094793	+	BOLA2	chr16	30094137	-
5CDS-3UTR	ENST00000288235	ENST00000339859		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
5CDS-3UTR	ENST00000288235	ENST00000408019		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
5CDS-3UTR	ENST00000288235	ENST00000428547		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
5CDS-3UTR	ENST00000288235	ENST00000394811		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
5CDS-intron	ENST00000288235	ENST00000497106		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
5CDS-intron	ENST00000288235	ENST00000422491		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
5CDS-intron	ENST00000288235	ENST00000319786		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-3UTR	ENST00000558814	ENST00000339859		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-3UTR	ENST00000558814	ENST00000408019		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-3UTR	ENST00000558814	ENST00000428547		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-3UTR	ENST00000558814	ENST00000394811		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-intron	ENST00000558814	ENST00000497106		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-intron	ENST00000558814	ENST00000422491		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-intron	ENST00000558814	ENST00000319786		ChiTaRS3.1			BF154692	MYO1E	chr15	59445789	-	USP54	chr10	75257463	-
intron-3CDS	ENST00000392723	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000392723	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000392723	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000392723	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000392723	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000392723	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000392723	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000392723	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000361398	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000361398	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000361398	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000361398	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000361398	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000361398	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000361398	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000361398	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000271715	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000271715	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000271715	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000271715	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000271715	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000271715	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000271715	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000271715	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000368863	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000368863	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000368863	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000368863	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000368863	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000368863	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000368863	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000368863	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000409503	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000409503	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000409503	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000409503	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000409503	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000409503	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000409503	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000409503	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000531094	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000531094	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000531094	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000531094	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000531094	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000531094	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000531094	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000531094	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000540984	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000540984	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000540984	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000540984	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000540984	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000540984	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000540984	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000540984	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000491586	ENST00000392723		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000491586	ENST00000361398		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000491586	ENST00000271715		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000491586	ENST00000368863		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000491586	ENST00000409503		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-3CDS	ENST00000491586	ENST00000531094		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000491586	ENST00000540984		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
intron-5UTR	ENST00000491586	ENST00000491586		ChiTaRS3.1			AW850031	POGZ	chr1	151377923	-	POGZ	chr1	151414643	-
3UTR-3UTR	ENST00000412615	ENST00000412615		ChiTaRS3.1			CN277025	TRAFD1	chr12	112591265	-	TRAFD1	chr12	112591303	+
3UTR-3UTR	ENST00000412615	ENST00000257604		ChiTaRS3.1			CN277025	TRAFD1	chr12	112591265	-	TRAFD1	chr12	112591303	+
3UTR-3UTR	ENST00000257604	ENST00000412615		ChiTaRS3.1			CN277025	TRAFD1	chr12	112591265	-	TRAFD1	chr12	112591303	+
3UTR-3UTR	ENST00000257604	ENST00000257604		ChiTaRS3.1			CN277025	TRAFD1	chr12	112591265	-	TRAFD1	chr12	112591303	+
intron-intron	ENST00000417098	ENST00000417098		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000417098	ENST00000443023		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000417098	ENST00000260926		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000417098	ENST00000428695		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000417098	ENST00000457245		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000417098	ENST00000484124		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000443023	ENST00000417098		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000443023	ENST00000443023		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000443023	ENST00000260926		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000443023	ENST00000428695		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000443023	ENST00000457245		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000443023	ENST00000484124		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000260926	ENST00000417098		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000260926	ENST00000443023		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000260926	ENST00000260926		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000260926	ENST00000428695		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000260926	ENST00000457245		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000260926	ENST00000484124		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000428695	ENST00000417098		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000428695	ENST00000443023		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000428695	ENST00000260926		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000428695	ENST00000428695		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000428695	ENST00000457245		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000428695	ENST00000484124		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000457245	ENST00000417098		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000457245	ENST00000443023		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000457245	ENST00000260926		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000457245	ENST00000428695		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000457245	ENST00000457245		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000457245	ENST00000484124		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000484124	ENST00000417098		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000484124	ENST00000443023		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000484124	ENST00000260926		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000484124	ENST00000428695		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000484124	ENST00000457245		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000484124	ENST00000484124		ChiTaRS3.1			BF756278	SATB2	chr2	200298239	+	SATB2	chr2	200233326	+
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			BF875609	NEAT1	chr11	65205590	-	NEAT1	chr11	65205522	+
intron-3CDS	ENST00000372396	ENST00000285930		ChiTaRS3.1			AV708454	KDM4A	chr1	44166118	-	AKR1B1	chr7	134135623	-
intron-5UTR	ENST00000372396	ENST00000489022		ChiTaRS3.1			AV708454	KDM4A	chr1	44166118	-	AKR1B1	chr7	134135623	-
intron-3CDS	ENST00000463151	ENST00000285930		ChiTaRS3.1			AV708454	KDM4A	chr1	44166118	-	AKR1B1	chr7	134135623	-
intron-5UTR	ENST00000463151	ENST00000489022		ChiTaRS3.1			AV708454	KDM4A	chr1	44166118	-	AKR1B1	chr7	134135623	-
intron-3CDS	ENST00000301263	ENST00000301263		ChiTaRS3.1			BE939745	LY6D	chr8	143867098	+	LY6D	chr8	143866721	+
intron-5UTR	ENST00000301263	ENST00000518434		ChiTaRS3.1			BE939745	LY6D	chr8	143867098	+	LY6D	chr8	143866721	+
intron-3CDS	ENST00000518434	ENST00000301263		ChiTaRS3.1			BE939745	LY6D	chr8	143867098	+	LY6D	chr8	143866721	+
intron-5UTR	ENST00000518434	ENST00000518434		ChiTaRS3.1			BE939745	LY6D	chr8	143867098	+	LY6D	chr8	143866721	+
intron-3CDS	ENST00000380027	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
intron-3CDS	ENST00000396855	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
intron-3CDS	ENST00000305836	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
intron-3CDS	ENST00000380034	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
intron-3CDS	ENST00000396847	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
intron-3CDS	ENST00000483835	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
intron-3CDS	ENST00000396853	ENST00000267812		ChiTaRS3.1			AW889835	TRIM5	chr11	5729468	+	MFAP1	chr15	44107239	-
5CDS-intron	ENST00000371964	ENST00000254508		ChiTaRS3.1			AW800948	SURF2	chr9	136226901	+	NUP210	chr3	13390287	-
5CDS-intron	ENST00000371964	ENST00000485755		ChiTaRS3.1			AW800948	SURF2	chr9	136226901	+	NUP210	chr3	13390287	-
3UTR-intron	ENST00000495524	ENST00000254508		ChiTaRS3.1			AW800948	SURF2	chr9	136226901	+	NUP210	chr3	13390287	-
3UTR-intron	ENST00000495524	ENST00000485755		ChiTaRS3.1			AW800948	SURF2	chr9	136226901	+	NUP210	chr3	13390287	-
3UTR-3CDS	ENST00000428304	ENST00000375442		ChiTaRS3.1			BF944008	ABHD4	chr14	23080992	-	TSPYL2	chrX	53112193	+
intron-3CDS	ENST00000544562	ENST00000375442		ChiTaRS3.1			BF944008	ABHD4	chr14	23080992	-	TSPYL2	chrX	53112193	+
intron-5UTR	ENST00000380817	ENST00000322861		ChiTaRS3.1			BF827890	SBF1	chr22	50903560	+	MYLPF	chr16	30386151	+
intron-5UTR	ENST00000348911	ENST00000322861		ChiTaRS3.1			BF827890	SBF1	chr22	50903560	+	MYLPF	chr16	30386151	+
intron-5UTR	ENST00000390679	ENST00000322861		ChiTaRS3.1			BF827890	SBF1	chr22	50903560	+	MYLPF	chr16	30386151	+
intron-5UTR	ENST00000476293	ENST00000322861		ChiTaRS3.1			BF827890	SBF1	chr22	50903560	+	MYLPF	chr16	30386151	+
3UTR-intron	ENST00000417037	ENST00000434513		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000361221		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000452522		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000375415		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000375420		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000417037	ENST00000469726		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000417037	ENST00000375408		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000417037	ENST00000167825		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000434513		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000361221		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000452522		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000375415		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000375420		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000396334	ENST00000469726		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000396334	ENST00000375408		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000396334	ENST00000167825		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000434513		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000361221		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000452522		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000375415		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000375420		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000424893	ENST00000469726		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000424893	ENST00000375408		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000424893	ENST00000167825		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000434513		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000361221		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000452522		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000375415		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000375420		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000495303	ENST00000469726		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000495303	ENST00000375408		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000495303	ENST00000167825		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000434513		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000361221		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000452522		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000375415		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000375420		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000443433	ENST00000469726		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000443433	ENST00000375408		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000443433	ENST00000167825		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000434513		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000361221		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000452522		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000375415		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000375420		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-3UTR	ENST00000481122	ENST00000469726		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-3UTR	ENST00000481122	ENST00000375408		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-3UTR	ENST00000481122	ENST00000167825		ChiTaRS3.1			BE161378	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
Frame-shit	ENST00000265735	ENST00000538941		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000265735	ENST00000563290		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000265735	ENST00000324767		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
5CDS-intron	ENST00000265735	ENST00000562890		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000445866	ENST00000538941		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000445866	ENST00000563290		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000445866	ENST00000324767		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
5CDS-intron	ENST00000445866	ENST00000562890		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000437425	ENST00000538941		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000437425	ENST00000563290		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000437425	ENST00000324767		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
5CDS-intron	ENST00000437425	ENST00000562890		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000447873	ENST00000538941		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000447873	ENST00000563290		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000447873	ENST00000324767		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
5CDS-intron	ENST00000447873	ENST00000562890		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000428696	ENST00000538941		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000428696	ENST00000563290		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000428696	ENST00000324767		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
5CDS-intron	ENST00000428696	ENST00000562890		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000415788	ENST00000538941		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000415788	ENST00000563290		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000415788	ENST00000324767		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
5CDS-intron	ENST00000415788	ENST00000562890		ChiTaRS3.1			DA151135	SGCE	chr7	94285301	-	SCAPER	chr15	76914173	-
Frame-shit	ENST00000302190	ENST00000302190		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000302190	ENST00000520233		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000302190	ENST00000518385		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000302190	ENST00000522911		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000302190	ENST00000519914		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
intron-3CDS	ENST00000520233	ENST00000302190		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
intron-intron	ENST00000520233	ENST00000520233		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
intron-intron	ENST00000520233	ENST00000518385		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
intron-intron	ENST00000520233	ENST00000522911		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
intron-intron	ENST00000520233	ENST00000519914		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
Frame-shit	ENST00000518385	ENST00000302190		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000518385	ENST00000520233		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000518385	ENST00000518385		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000518385	ENST00000522911		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000518385	ENST00000519914		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
Frame-shit	ENST00000522911	ENST00000302190		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000522911	ENST00000520233		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000522911	ENST00000518385		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000522911	ENST00000522911		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000522911	ENST00000519914		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
Frame-shit	ENST00000519914	ENST00000302190		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000519914	ENST00000520233		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000519914	ENST00000518385		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000519914	ENST00000522911		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
5CDS-intron	ENST00000519914	ENST00000519914		ChiTaRS3.1			BE762893	SDC2	chr8	97614682	-	SDC2	chr8	97621671	-
intron-3CDS	ENST00000282050	ENST00000282050		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000282050	ENST00000593152		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000282050	ENST00000590665		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000282050	ENST00000398752		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000282050	ENST00000591267		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000593152	ENST00000282050		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000593152	ENST00000593152		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000593152	ENST00000590665		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000593152	ENST00000398752		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000593152	ENST00000591267		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000590665	ENST00000282050		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000590665	ENST00000593152		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000590665	ENST00000590665		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000590665	ENST00000398752		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000590665	ENST00000591267		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000398752	ENST00000282050		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000398752	ENST00000593152		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000398752	ENST00000590665		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000398752	ENST00000398752		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000398752	ENST00000591267		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000591267	ENST00000282050		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000591267	ENST00000593152		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000591267	ENST00000590665		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000591267	ENST00000398752		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-intron	ENST00000591267	ENST00000591267		ChiTaRS3.1			BQ640716	ATP5A1	chr18	43666118	-	ATP5A1	chr18	43669829	-
intron-3CDS	ENST00000382264	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000382264	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000382264	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000382264	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000382264	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-5UTR	ENST00000382264	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000382241	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000382241	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000382241	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000382241	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000382241	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-5UTR	ENST00000382241	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000404220	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000404220	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000404220	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000404220	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000404220	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-5UTR	ENST00000404220	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342136	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342136	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342136	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342136	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342136	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-5UTR	ENST00000342136	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000420068	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000420068	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000420068	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000420068	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000420068	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-5UTR	ENST00000420068	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342101	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342101	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342101	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342101	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-3CDS	ENST00000342101	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
3UTR-5UTR	ENST00000342101	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000413881	ENST00000381916		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000413881	ENST00000333602		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000413881	ENST00000428187		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000413881	ENST00000392400		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000413881	ENST00000316664		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-5UTR	ENST00000413881	ENST00000468819		ChiTaRS3.1			BF926990	IFNAR2	chr21	34636571	-	TNK2	chr3	195611790	-
intron-3CDS	ENST00000390237	ENST00000390237		ChiTaRS3.1			AA804716	IGKC	chr2	89156821	+	IGKC	chr2	89157093	-
5CDS-5UTR	ENST00000588240	ENST00000338488		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000588240	ENST00000395097		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000588240	ENST00000330847		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000338488		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000395097		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000330847		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000338488		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000395097		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000330847		ChiTaRS3.1			AJ243810	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
intron-3UTR	ENST00000272117	ENST00000272117		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-3UTR	ENST00000272117	ENST00000429204		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-intron	ENST00000272117	ENST00000366784		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-3UTR	ENST00000429204	ENST00000272117		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-3UTR	ENST00000429204	ENST00000429204		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-intron	ENST00000429204	ENST00000366784		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-3UTR	ENST00000366784	ENST00000272117		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-3UTR	ENST00000366784	ENST00000429204		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
intron-intron	ENST00000366784	ENST00000366784		ChiTaRS3.1			BU155062	ITPKB	chr1	226819655	+	ITPKB	chr1	226819593	-
In-frame	ENST00000303562	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
In-frame	ENST00000303562	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
5CDS-intron	ENST00000303562	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000554617	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000554617	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-intron	ENST00000554617	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000556324	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000556324	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-intron	ENST00000556324	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
In-frame	ENST00000535987	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
In-frame	ENST00000535987	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
5CDS-intron	ENST00000535987	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000555242	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000555242	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-intron	ENST00000555242	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
In-frame	ENST00000555686	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
In-frame	ENST00000555686	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
5CDS-intron	ENST00000555686	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
Frame-shit	ENST00000555347	ENST00000372009		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
Frame-shit	ENST00000555347	ENST00000361297		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
5CDS-intron	ENST00000555347	ENST00000477968		ChiTaRS3.1			BF904848	FOS	chr14	75747698	+	MAST2	chr1	46496700	+
intron-3CDS	ENST00000545566	ENST00000301607		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000545566	ENST00000586740		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000544987	ENST00000301607		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000544987	ENST00000586740		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000314720	ENST00000301607		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000314720	ENST00000586740		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000490617	ENST00000301607		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000490617	ENST00000586740		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000380600	ENST00000301607		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
intron-3CDS	ENST00000380600	ENST00000586740		ChiTaRS3.1			BI045194	TCEANC	chrX	13687905	-	EVPL	chr17	74005206	-
5CDS-intron	ENST00000502288	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000502288	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000507874	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000341181	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000437922	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394180	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000503004	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394185	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000394181	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000510545	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000511081	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
5CDS-intron	ENST00000513287	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000502288		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000507874		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000341181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000437922		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000394180		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000503004		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000394185		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000394181		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000510545		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000511081		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000513287		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
intron-intron	ENST00000508503	ENST00000508503		ChiTaRS3.1			AA665142	CLDND1	chr3	98235895	-	CLDND1	chr3	98235785	+
3UTR-3UTR	ENST00000602240	ENST00000602240		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000602240	ENST00000204005		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000602240	ENST00000545697		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000602240	ENST00000308370		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000602240	ENST00000396819		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000602240	ENST00000243562		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000204005	ENST00000602240		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000204005	ENST00000204005		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000204005	ENST00000545697		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000204005	ENST00000308370		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000204005	ENST00000396819		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000204005	ENST00000243562		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000545697	ENST00000602240		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000545697	ENST00000204005		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000545697	ENST00000545697		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000545697	ENST00000308370		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000545697	ENST00000396819		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000545697	ENST00000243562		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000308370	ENST00000602240		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000308370	ENST00000204005		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000308370	ENST00000545697		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000308370	ENST00000308370		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000308370	ENST00000396819		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000308370	ENST00000243562		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000396819	ENST00000602240		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000396819	ENST00000204005		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000396819	ENST00000545697		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000396819	ENST00000308370		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000396819	ENST00000396819		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
5CDS-3UTR	ENST00000396819	ENST00000243562		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000243562	ENST00000602240		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000243562	ENST00000204005		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000243562	ENST00000545697		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000243562	ENST00000308370		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000243562	ENST00000396819		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
3UTR-3UTR	ENST00000243562	ENST00000243562		ChiTaRS3.1			AA993262	LTBP4	chr19	41128505	-	LTBP4	chr19	41135635	-
intron-3CDS	ENST00000225964	ENST00000225964		ChiTaRS3.1			BM314078	COL1A1	chr17	48261972	-	COL1A1	chr17	48262944	-
intron-3CDS	ENST00000372954	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372954	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372954	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372954	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000393608	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000393608	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000393608	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000393608	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000541172	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000541172	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000541172	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000541172	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000357558	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000357558	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000357558	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000357558	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000325721	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000325721	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000325721	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000325721	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000538431	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000538431	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000538431	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000538431	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000277465	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000277465	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000277465	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000277465	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372948	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372948	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372948	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372948	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372938	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372938	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372938	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000372938	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000476727	ENST00000324856		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000476727	ENST00000457599		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000476727	ENST00000374152		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000476727	ENST00000540690		ChiTaRS3.1			BF800936	CIZ1	chr9	130932012	-	ARID1A	chr1	27106068	-
intron-3CDS	ENST00000374103	ENST00000374103		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000374103	ENST00000432695		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000374103	ENST00000419399		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000374103	ENST00000490844		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-3CDS	ENST00000432695	ENST00000374103		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000432695	ENST00000432695		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000432695	ENST00000419399		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000432695	ENST00000490844		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-3CDS	ENST00000419399	ENST00000374103		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000419399	ENST00000432695		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000419399	ENST00000419399		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000419399	ENST00000490844		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-3CDS	ENST00000490844	ENST00000374103		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000490844	ENST00000432695		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000490844	ENST00000419399		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-intron	ENST00000490844	ENST00000490844		ChiTaRS3.1			BP348542	OGDHL	chr10	50942936	-	OGDHL	chr10	50966550	-
intron-3CDS	ENST00000297185	ENST00000297185		ChiTaRS3.1			BG876899	HSPA9	chr5	137906742	-	HSPA9	chr5	137906680	+
intron-intron	ENST00000297185	ENST00000501917		ChiTaRS3.1			BG876899	HSPA9	chr5	137906742	-	HSPA9	chr5	137906680	+
intron-3CDS	ENST00000501917	ENST00000297185		ChiTaRS3.1			BG876899	HSPA9	chr5	137906742	-	HSPA9	chr5	137906680	+
intron-intron	ENST00000501917	ENST00000501917		ChiTaRS3.1			BG876899	HSPA9	chr5	137906742	-	HSPA9	chr5	137906680	+
intron-3UTR	ENST00000376177	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000396172	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000417556	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000458640	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000462421	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000415382	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000453105	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000449074	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000552820	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000463430	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000438578	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000415689	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000456476	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000412106	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000547039	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000550435	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000453488	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000453138	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000552288	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000441425	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000456666	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000546633	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000483957	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000430703	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000416863	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000413678	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000414440	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000547489	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000551031	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000468089	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000400293	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000400296	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000400295	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000383508	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000548340	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000548331	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000495391	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000446341	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000548614	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000448296	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000412330	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000445218	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000546637	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000489325	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000450987	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000431360	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000430784	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000550217	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000470514	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3UTR	ENST00000549374	ENST00000370664		ChiTaRS3.1			AA642571	DDX39B	chr6	2828922	+	UBTD1	chr10	99330334	-
intron-3CDS	ENST00000397256	ENST00000269856		ChiTaRS3.1			BI033517	ARPC4-TTLL3	chr3	9882233	+	FEM1A	chr19	4792780	-
intron-3CDS	ENST00000483195	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000405201		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000404621		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000404121		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000356219		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000397355		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000429285		ChiTaRS3.1			BF528779	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
In-frame	ENST00000265138	ENST00000265138		ChiTaRS3.1			BF353490	ARRDC3	chr5	90669934	-	ARRDC3	chr5	90669536	+
5CDS-intron	ENST00000265138	ENST00000503192		ChiTaRS3.1			BF353490	ARRDC3	chr5	90669934	-	ARRDC3	chr5	90669536	+
intron-3CDS	ENST00000503192	ENST00000265138		ChiTaRS3.1			BF353490	ARRDC3	chr5	90669934	-	ARRDC3	chr5	90669536	+
intron-intron	ENST00000503192	ENST00000503192		ChiTaRS3.1			BF353490	ARRDC3	chr5	90669934	-	ARRDC3	chr5	90669536	+
5CDS-intron	ENST00000554012	ENST00000437079		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000554012	ENST00000287546		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000554012	ENST00000436792		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000554012	ENST00000446204		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000554012	ENST00000424463		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000554012	ENST00000463687		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000402399	ENST00000437079		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000402399	ENST00000287546		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000402399	ENST00000436792		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000402399	ENST00000446204		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000402399	ENST00000424463		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
5CDS-intron	ENST00000402399	ENST00000463687		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000556450	ENST00000437079		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000556450	ENST00000287546		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000556450	ENST00000436792		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000556450	ENST00000446204		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000556450	ENST00000424463		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000556450	ENST00000463687		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000555202	ENST00000437079		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000555202	ENST00000287546		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000555202	ENST00000436792		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000555202	ENST00000446204		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000555202	ENST00000424463		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000555202	ENST00000463687		ChiTaRS3.1			X82240	TCL1A	chr14	96176304	-	VPS8	chr3	184708737	-
intron-intron	ENST00000373925	ENST00000373925		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373925	ENST00000328928		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373925	ENST00000373927		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373925	ENST00000373921		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373925	ENST00000492877		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000328928	ENST00000373925		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000328928	ENST00000328928		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000328928	ENST00000373927		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000328928	ENST00000373921		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000328928	ENST00000492877		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373927	ENST00000373925		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373927	ENST00000328928		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373927	ENST00000373927		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373927	ENST00000373921		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000373927	ENST00000492877		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
5CDS-intron	ENST00000373921	ENST00000373925		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
5CDS-intron	ENST00000373921	ENST00000328928		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
5CDS-intron	ENST00000373921	ENST00000373927		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
5CDS-intron	ENST00000373921	ENST00000373921		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
5CDS-intron	ENST00000373921	ENST00000492877		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000492877	ENST00000373925		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000492877	ENST00000328928		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000492877	ENST00000373927		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000492877	ENST00000373921		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
intron-intron	ENST00000492877	ENST00000492877		ChiTaRS3.1			BF873826	THEMIS2	chr1	28208842	-	THEMIS2	chr1	28208957	+
5CDS-intron	ENST00000361924	ENST00000405379		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000361924	ENST00000324883		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000361924	ENST00000324907		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000361924	ENST00000480736		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000435830	ENST00000405379		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000435830	ENST00000324883		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000435830	ENST00000324907		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000435830	ENST00000480736		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000444882	ENST00000405379		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000444882	ENST00000324883		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000444882	ENST00000324907		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
intron-intron	ENST00000444882	ENST00000480736		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000356847	ENST00000405379		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000356847	ENST00000324883		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000356847	ENST00000324907		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
5CDS-intron	ENST00000356847	ENST00000480736		ChiTaRS3.1			BE693592	GOLGA4	chr3	37368943	-	GRHL1	chr2	10136337	+
In-frame	ENST00000356166	ENST00000448525		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000356166	ENST00000382745		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000356166	ENST00000262318		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
5CDS-intron	ENST00000356166	ENST00000566812		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000568722	ENST00000448525		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000568722	ENST00000382745		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000568722	ENST00000262318		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
5CDS-intron	ENST00000568722	ENST00000566812		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
intron-3CDS	ENST00000482749	ENST00000448525		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
intron-3CDS	ENST00000482749	ENST00000382745		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
intron-3CDS	ENST00000482749	ENST00000262318		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
intron-intron	ENST00000482749	ENST00000566812		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000395073	ENST00000448525		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000395073	ENST00000382745		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000395073	ENST00000262318		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
5CDS-intron	ENST00000395073	ENST00000566812		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000287468	ENST00000448525		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000287468	ENST00000382745		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
In-frame	ENST00000287468	ENST00000262318		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
5CDS-intron	ENST00000287468	ENST00000566812		ChiTaRS3.1			BI029230	FBRS	chr16	30678288	+	CLCN7	chr16	1504462	-
intron-3CDS	ENST00000544021	ENST00000396432		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
intron-intron	ENST00000544021	ENST00000320481		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
intron-intron	ENST00000544021	ENST00000493154		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
3UTR-3CDS	ENST00000266556	ENST00000396432		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
3UTR-intron	ENST00000266556	ENST00000320481		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
3UTR-intron	ENST00000266556	ENST00000493154		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
3UTR-3CDS	ENST00000545700	ENST00000396432		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
3UTR-intron	ENST00000545700	ENST00000320481		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
3UTR-intron	ENST00000545700	ENST00000493154		ChiTaRS3.1			AA863096	TAPBPL	chr12	6571364	-	ARHGAP21	chr10	24874709	+
intron-intron	ENST00000441068	ENST00000441068		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000441068	ENST00000254090		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000441068	ENST00000369272		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000441068	ENST00000465173		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000441068		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000254090		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000369272		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000465173		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000441068		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000254090		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000369272		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000465173		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000441068		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000254090		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000369272		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000465173		ChiTaRS3.1			AA491849	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000377777	ENST00000377777		ChiTaRS3.1			BU679516	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
intron-3UTR	ENST00000377777	ENST00000289316		ChiTaRS3.1			BU679516	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
3UTR-intron	ENST00000289316	ENST00000377777		ChiTaRS3.1			BU679516	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
3UTR-3UTR	ENST00000289316	ENST00000289316		ChiTaRS3.1			BU679516	HIST1H2BD	chr6	26171512	-	HIST1H2BD	chr6	26171281	+
intron-3UTR	ENST00000337190	ENST00000337190		ChiTaRS3.1			CB853830	MXD4	chr4	2251750	+	MXD4	chr4	2251923	-
intron-intron	ENST00000337190	ENST00000515378		ChiTaRS3.1			CB853830	MXD4	chr4	2251750	+	MXD4	chr4	2251923	-
intron-3UTR	ENST00000515378	ENST00000337190		ChiTaRS3.1			CB853830	MXD4	chr4	2251750	+	MXD4	chr4	2251923	-
intron-intron	ENST00000515378	ENST00000515378		ChiTaRS3.1			CB853830	MXD4	chr4	2251750	+	MXD4	chr4	2251923	-
In-frame	ENST00000263102	ENST00000355710		ChiTaRS3.1			D90075	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		ChiTaRS3.1			D90075	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
5CDS-intron	ENST00000344922	ENST00000217074		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-intron	ENST00000344922	ENST00000255136		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344922	ENST00000537323		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344922	ENST00000217073		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344922	ENST00000490798		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344922	ENST00000372824		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344922	ENST00000372819		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344922	ENST00000217075		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-intron	ENST00000344441	ENST00000217074		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-intron	ENST00000344441	ENST00000255136		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344441	ENST00000537323		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344441	ENST00000217073		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344441	ENST00000490798		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344441	ENST00000372824		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344441	ENST00000372819		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
5CDS-3UTR	ENST00000344441	ENST00000217075		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-intron	ENST00000344507	ENST00000217074		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-intron	ENST00000344507	ENST00000255136		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000344507	ENST00000537323		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000344507	ENST00000217073		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000344507	ENST00000490798		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000344507	ENST00000372824		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000344507	ENST00000372819		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000344507	ENST00000217075		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-intron	ENST00000340535	ENST00000217074		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-intron	ENST00000340535	ENST00000255136		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000340535	ENST00000537323		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000340535	ENST00000217073		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000340535	ENST00000490798		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000340535	ENST00000372824		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000340535	ENST00000372819		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-3UTR	ENST00000340535	ENST00000217075		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-intron	ENST00000470521	ENST00000217074		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-intron	ENST00000470521	ENST00000255136		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-3UTR	ENST00000470521	ENST00000537323		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-3UTR	ENST00000470521	ENST00000217073		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-3UTR	ENST00000470521	ENST00000490798		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-3UTR	ENST00000470521	ENST00000372824		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-3UTR	ENST00000470521	ENST00000372819		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
3UTR-3UTR	ENST00000470521	ENST00000217075		ChiTaRS3.1			BF906047	MIA3	chr1	222802568	-	PABPC1L	chr20	43565359	-
intron-intron	ENST00000405995	ENST00000392870		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000405995	ENST00000369108		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000405995	ENST00000473264		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000357304	ENST00000392870		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000357304	ENST00000369108		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000357304	ENST00000473264		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000458550	ENST00000392870		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000458550	ENST00000369108		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000458550	ENST00000473264		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000372249	ENST00000392870		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000372249	ENST00000369108		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000372249	ENST00000473264		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000465931	ENST00000392870		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000465931	ENST00000369108		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-intron	ENST00000465931	ENST00000473264		ChiTaRS3.1			BF822493	PRRC2B	chr9	134343340	-	GRK5	chr10	121184978	-
intron-5UTR	ENST00000366730	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366730	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-3UTR	ENST00000366730	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366730	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000391865	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000391865	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-3UTR	ENST00000391865	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000391865	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366726	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366726	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-3UTR	ENST00000366726	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366726	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000312726	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000312726	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-3UTR	ENST00000312726	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000312726	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000366728	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000366728	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-3UTR	ENST00000366728	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000366728	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000366723	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000366723	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-3UTR	ENST00000366723	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5CDS-5UTR	ENST00000366723	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366722	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366722	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-3UTR	ENST00000366722	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366722	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366721	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366721	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-3UTR	ENST00000366721	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
5UTR-5UTR	ENST00000366721	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366718	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366718	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-3UTR	ENST00000366718	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366718	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000470040	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000470040	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-3UTR	ENST00000470040	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000470040	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366716	ENST00000272102		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366716	ENST00000540651		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-3UTR	ENST00000366716	ENST00000478424		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
intron-5UTR	ENST00000366716	ENST00000541182		ChiTaRS3.1			DA131615	GUK1	chr1	228328067	+	ARF1	chr1	228284778	+
Frame-shit	ENST00000379666	ENST00000354957		ChiTaRS3.1			DA302116	MRPL33	chr2	27995560	+	ZNF649	chr19	52399820	-
Frame-shit	ENST00000379666	ENST00000600738		ChiTaRS3.1			DA302116	MRPL33	chr2	27995560	+	ZNF649	chr19	52399820	-
Frame-shit	ENST00000296102	ENST00000354957		ChiTaRS3.1			DA302116	MRPL33	chr2	27995560	+	ZNF649	chr19	52399820	-
Frame-shit	ENST00000296102	ENST00000600738		ChiTaRS3.1			DA302116	MRPL33	chr2	27995560	+	ZNF649	chr19	52399820	-
3UTR-3CDS	ENST00000483992	ENST00000354957		ChiTaRS3.1			DA302116	MRPL33	chr2	27995560	+	ZNF649	chr19	52399820	-
3UTR-3CDS	ENST00000483992	ENST00000600738		ChiTaRS3.1			DA302116	MRPL33	chr2	27995560	+	ZNF649	chr19	52399820	-
intron-3CDS	ENST00000308377	ENST00000402744		ChiTaRS3.1			BF935865	SLFN11	chr17	33680029	-	CPE	chr4	166385720	+
intron-3CDS	ENST00000394566	ENST00000402744		ChiTaRS3.1			BF935865	SLFN11	chr17	33680029	-	CPE	chr4	166385720	+
Frame-shit	ENST00000240423	ENST00000240423		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000240423	ENST00000427946		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000240423	ENST00000455200		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000427946	ENST00000240423		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000427946	ENST00000427946		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000427946	ENST00000455200		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000455200	ENST00000240423		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000455200	ENST00000427946		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000455200	ENST00000455200		ChiTaRS3.1			AA961770	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
intron-3CDS	ENST00000522793	ENST00000344147		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000522793	ENST00000479629		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000522793	ENST00000373714		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000522793	ENST00000546109		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000522793	ENST00000422613		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3CDS	ENST00000231238	ENST00000344147		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000231238	ENST00000479629		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000231238	ENST00000373714		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000231238	ENST00000546109		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000231238	ENST00000422613		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3CDS	ENST00000520274	ENST00000344147		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000520274	ENST00000479629		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000520274	ENST00000373714		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000520274	ENST00000546109		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
intron-3UTR	ENST00000520274	ENST00000422613		ChiTaRS3.1			CB852453	TTC1	chr5	159450834	+	ZCCHC17	chr1	31821769	+
Frame-shit	ENST00000310137	ENST00000310137		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000393979		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409372		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000443702		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409738		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000461478		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000393979	ENST00000310137		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000393979		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409372		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000443702		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409738		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000461478		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409372	ENST00000310137		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000393979		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409372		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000443702		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409738		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000461478		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000443702	ENST00000310137		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000393979		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409372		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000443702		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409738		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000461478		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409738	ENST00000310137		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000393979		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409372		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000443702		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409738		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000461478		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000461478	ENST00000310137		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000393979		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409372		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000443702		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409738		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000461478		ChiTaRS3.1			AA421251	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
3UTR-3CDS	ENST00000301740	ENST00000301740		ChiTaRS3.1			BF876112	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
3UTR-3UTR	ENST00000301740	ENST00000574593		ChiTaRS3.1			BF876112	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BF876112	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
intron-3UTR	ENST00000574593	ENST00000574593		ChiTaRS3.1			BF876112	SRRM2	chr16	2821035	+	SRRM2	chr16	2819030	+
intron-3CDS	ENST00000376861	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000334668	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000259951	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000440587	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000434407	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000475996	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000342322	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000552082	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000551026	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000383516	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000383515	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000496199	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000422711	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000551832	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000549067	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000428296	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000420067	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000485297	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000422439	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000490874	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000383626	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000550932	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000547132	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000383627	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000359076	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000489167	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000435058	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000551780	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000551347	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000445657	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000440590	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000490259	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000444891	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000549422	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000552880	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000549254	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000430472	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000376848	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000463731	ENST00000225964		ChiTaRS3.1			BQ328407	HLA-F	chr6	1294230	-	COL1A1	chr17	48266544	+
intron-3CDS	ENST00000252674	ENST00000534358		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-3CDS	ENST00000252674	ENST00000389506		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-3CDS	ENST00000252674	ENST00000354520		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-intron	ENST00000252674	ENST00000420751		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-3CDS	ENST00000585588	ENST00000534358		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-3CDS	ENST00000585588	ENST00000389506		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-3CDS	ENST00000585588	ENST00000354520		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
intron-intron	ENST00000585588	ENST00000420751		ChiTaRS3.1			AM050798	MLLT1	chr19	6276356	-	KMT2A	chr11	118359324	+
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000446906		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000377072		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000307729		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
In-frame	ENST00000354520	ENST00000377059		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
3UTR-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AF272375	KMT2A	chr11	118355029	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000373715	ENST00000373715		ChiTaRS3.1			BF336418	SRSF3	chr6	36567729	-	SRSF3	chr6	36567819	+
intron-3UTR	ENST00000373715	ENST00000339436		ChiTaRS3.1			BF336418	SRSF3	chr6	36567729	-	SRSF3	chr6	36567819	+
3UTR-intron	ENST00000339436	ENST00000373715		ChiTaRS3.1			BF336418	SRSF3	chr6	36567729	-	SRSF3	chr6	36567819	+
3UTR-3UTR	ENST00000339436	ENST00000339436		ChiTaRS3.1			BF336418	SRSF3	chr6	36567729	-	SRSF3	chr6	36567819	+
intron-intron	ENST00000341500	ENST00000377559		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000341500	ENST00000265459		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000341500	ENST00000301894		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000341500	ENST00000377551		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000341500	ENST00000409571		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000341500	ENST00000496291		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000302850	ENST00000377559		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000302850	ENST00000265459		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000302850	ENST00000301894		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000302850	ENST00000377551		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000302850	ENST00000409571		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
intron-intron	ENST00000302850	ENST00000496291		ChiTaRS3.1			BQ371811	INSR	chr19	7225727	-	NRXN2	chr11	64424470	+
5CDS-5UTR	ENST00000222644	ENST00000222644		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-intron	ENST00000222644	ENST00000409761		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-5UTR	ENST00000222644	ENST00000396475		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-5UTR	ENST00000409761	ENST00000222644		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-intron	ENST00000409761	ENST00000409761		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-5UTR	ENST00000409761	ENST00000396475		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-5UTR	ENST00000396475	ENST00000222644		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-intron	ENST00000396475	ENST00000409761		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
5CDS-5UTR	ENST00000396475	ENST00000396475		ChiTaRS3.1			DW419199	MPP6	chr7	24708279	+	MPP6	chr7	24663282	+
intron-3UTR	ENST00000302125	ENST00000252699		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000302125	ENST00000424234		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000302125	ENST00000390009		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000302125	ENST00000497637		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-3UTR	ENST00000412103	ENST00000252699		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000412103	ENST00000424234		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000412103	ENST00000390009		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000412103	ENST00000497637		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-3UTR	ENST00000457570	ENST00000252699		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000457570	ENST00000424234		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000457570	ENST00000390009		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-intron	ENST00000457570	ENST00000497637		ChiTaRS3.1			BU739813	MZB1	chr5	138723488	+	ACTN4	chr19	39220941	+
intron-3CDS	ENST00000345146	ENST00000322723		ChiTaRS3.1			CN423757	IDH1	chr2	209103827	-	NCL	chr2	232326631	-
intron-3CDS	ENST00000446179	ENST00000322723		ChiTaRS3.1			CN423757	IDH1	chr2	209103827	-	NCL	chr2	232326631	-
intron-3CDS	ENST00000415913	ENST00000322723		ChiTaRS3.1			CN423757	IDH1	chr2	209103827	-	NCL	chr2	232326631	-
5CDS-intron	ENST00000527884	ENST00000410075		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000527884	ENST00000377802		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000527884	ENST00000355812		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000527884	ENST00000409544		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000527884	ENST00000264447		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000527884	ENST00000409407		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000250024	ENST00000410075		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000250024	ENST00000377802		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000250024	ENST00000355812		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000250024	ENST00000409544		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000250024	ENST00000264447		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
5CDS-intron	ENST00000250024	ENST00000409407		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000529188	ENST00000410075		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000529188	ENST00000377802		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000529188	ENST00000355812		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000529188	ENST00000409544		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000529188	ENST00000264447		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-intron	ENST00000529188	ENST00000409407		ChiTaRS3.1			DA892965	E2F8	chr11	19258861	-	ZNF638	chr2	71623271	+
intron-5UTR	ENST00000334940	ENST00000434425		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000334940	ENST00000380071		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000374417	ENST00000434425		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000374417	ENST00000380071		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000340258	ENST00000434425		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000340258	ENST00000380071		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000472561	ENST00000434425		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
intron-5UTR	ENST00000472561	ENST00000380071		ChiTaRS3.1			DB171776	RASSF4	chr10	45473448	-	RFC3	chr13	34392289	+
5CDS-intron	ENST00000549920	ENST00000518527		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000549920	ENST00000377360		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000549920	ENST00000328939		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000549920	ENST00000390656		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000549920	ENST00000520740		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000549920	ENST00000434108		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000549920	ENST00000411494		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000518527		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000377360		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000328939		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000390656		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000520740		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000434108		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000550645	ENST00000411494		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000518527		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000377360		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000328939		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000390656		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000520740		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000434108		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-intron	ENST00000552588	ENST00000411494		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000518527		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000377360		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000328939		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000390656		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000520740		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000434108		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
intron-intron	ENST00000549273	ENST00000411494		ChiTaRS3.1			BG911000	RPL18	chr19	49118588	-	KCNIP1	chr5	169873411	+
5CDS-5UTR	ENST00000371697	ENST00000341049		ChiTaRS3.1			BP260187	ANKRD1	chr10	92678893	-	CAV1	chr7	116165090	+
5CDS-5UTR	ENST00000371697	ENST00000393470		ChiTaRS3.1			BP260187	ANKRD1	chr10	92678893	-	CAV1	chr7	116165090	+
5CDS-intron	ENST00000371697	ENST00000405348		ChiTaRS3.1			BP260187	ANKRD1	chr10	92678893	-	CAV1	chr7	116165090	+
5CDS-intron	ENST00000371697	ENST00000393468		ChiTaRS3.1			BP260187	ANKRD1	chr10	92678893	-	CAV1	chr7	116165090	+
5CDS-intron	ENST00000371697	ENST00000393467		ChiTaRS3.1			BP260187	ANKRD1	chr10	92678893	-	CAV1	chr7	116165090	+
5UTR-3CDS	ENST00000332149	ENST00000430479		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-3CDS	ENST00000332149	ENST00000399357		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000420159		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000343495		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000242066		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000405192		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000405358		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000403527		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000405218		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000332149	ENST00000403685		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-5UTR	ENST00000332149	ENST00000476720		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-3CDS	ENST00000398585	ENST00000430479		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-3CDS	ENST00000398585	ENST00000399357		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000420159		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000343495		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000242066		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000405192		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000405358		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000403527		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000405218		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000398585	ENST00000403685		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-5UTR	ENST00000398585	ENST00000476720		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-3CDS	ENST00000458356	ENST00000430479		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-3CDS	ENST00000458356	ENST00000399357		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000420159		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000343495		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000242066		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000405192		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000405358		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000403527		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000405218		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-intron	ENST00000458356	ENST00000403685		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-5UTR	ENST00000458356	ENST00000476720		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-3CDS	ENST00000497881	ENST00000430479		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-3CDS	ENST00000497881	ENST00000399357		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000420159		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000343495		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000242066		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000405192		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000405358		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000403527		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000405218		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-intron	ENST00000497881	ENST00000403685		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
5UTR-5UTR	ENST00000497881	ENST00000476720		ChiTaRS3.1			DQ204770	TMPRSS2	chr21	42880008	-	ETV1	chr7	14017108	-
intron-3CDS	ENST00000445597	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000445597	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000445597	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000445597	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000445597	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000430092	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000430092	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000430092	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000430092	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000430092	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000439375	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000439375	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000439375	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000439375	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000439375	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000400952	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000400952	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000400952	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000400952	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000400952	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366849	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366849	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366849	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366849	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000366849	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366850	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366850	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366850	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366850	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000366850	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000498360	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000498360	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000498360	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000498360	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000498360	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366848	ENST00000391976		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366848	ENST00000310931		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366848	ENST00000391975		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-3CDS	ENST00000366848	ENST00000427183		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000366848	ENST00000476807		ChiTaRS3.1			BG984033	DNAH14	chr1	225581776	+	HDLBP	chr2	242194545	-
intron-intron	ENST00000244230	ENST00000510861		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000514090		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000381620		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000356504		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000540012		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000507069		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000515082		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000507460		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000244230	ENST00000509716		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000510861		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000514090		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000381620		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000356504		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000540012		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000507069		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000515082		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000507460		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000498451	ENST00000509716		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000510861		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000514090		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000381620		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000356504		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000540012		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000507069		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000515082		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000507460		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
intron-intron	ENST00000468427	ENST00000509716		ChiTaRS3.1			BE835106	MPHOSPH10	chr2	71362676	-	GABRA2	chr4	46311426	-
5UTR-3CDS	ENST00000356978	ENST00000355280		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
5UTR-3CDS	ENST00000356978	ENST00000347992		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
5UTR-3CDS	ENST00000356978	ENST00000453408		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
5UTR-3CDS	ENST00000447653	ENST00000355280		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
5UTR-3CDS	ENST00000447653	ENST00000347992		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
5UTR-3CDS	ENST00000447653	ENST00000453408		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
3UTR-3CDS	ENST00000555132	ENST00000355280		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
3UTR-3CDS	ENST00000555132	ENST00000347992		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
3UTR-3CDS	ENST00000555132	ENST00000453408		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3CDS	ENST00000553542	ENST00000355280		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3CDS	ENST00000553542	ENST00000347992		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3CDS	ENST00000553542	ENST00000453408		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3CDS	ENST00000544280	ENST00000355280		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3CDS	ENST00000544280	ENST00000347992		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3CDS	ENST00000544280	ENST00000453408		ChiTaRS3.1			BF898266	CALM1	chr14	90863532	+	MINK1	chr17	4791027	+
intron-3UTR	ENST00000262940	ENST00000431992		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000373422		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000257118		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000419414		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000262940	ENST00000373416		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000262940	ENST00000485928		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000262940	ENST00000373418		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000431992		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000373422		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000257118		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000419414		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000461209	ENST00000373416		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000461209	ENST00000485928		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000461209	ENST00000373418		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000431992		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000373422		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000257118		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000419414		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000449970	ENST00000373416		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000449970	ENST00000485928		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000449970	ENST00000373418		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000431992		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000373422		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000257118		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000419414		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000462172	ENST00000373416		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000462172	ENST00000485928		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000462172	ENST00000373418		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000431992		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000373422		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000257118		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000419414		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-intron	ENST00000521822	ENST00000373416		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-5UTR	ENST00000521822	ENST00000485928		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3UTR	ENST00000521822	ENST00000373418		ChiTaRS3.1			BF858820	RASA4	chr7	102123842	-	PHC2	chr1	33790220	-
intron-3CDS	ENST00000440909	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000448921	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000437397	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000355814	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000393087	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000393088	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000404814	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000449399	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000402629	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
intron-3CDS	ENST00000555289	ENST00000231420		ChiTaRS3.1			AF121182	SERPINA1	chr14	94848980	-	AGXT2	chr5	35025960	-
3UTR-3UTR	ENST00000359546	ENST00000359546		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
3UTR-intron	ENST00000359546	ENST00000506642		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
3UTR-intron	ENST00000359546	ENST00000393745		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
3UTR-intron	ENST00000359546	ENST00000512824		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
3UTR-intron	ENST00000359546	ENST00000515094		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-3UTR	ENST00000506642	ENST00000359546		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000506642	ENST00000506642		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000506642	ENST00000393745		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000506642	ENST00000512824		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000506642	ENST00000515094		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-3UTR	ENST00000393745	ENST00000359546		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000393745	ENST00000506642		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000393745	ENST00000393745		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000393745	ENST00000512824		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000393745	ENST00000515094		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-3UTR	ENST00000512824	ENST00000359546		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000512824	ENST00000506642		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000512824	ENST00000393745		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000512824	ENST00000512824		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000512824	ENST00000515094		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-3UTR	ENST00000515094	ENST00000359546		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000515094	ENST00000506642		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000515094	ENST00000393745		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000515094	ENST00000512824		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-intron	ENST00000515094	ENST00000515094		ChiTaRS3.1			AA015617	CPLX2	chr5	175310949	-	CPLX2	chr5	175310818	+
intron-3CDS	ENST00000458659	ENST00000458659		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000458659	ENST00000501704		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000458659	ENST00000261489		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000458659	ENST00000460842		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000501704	ENST00000458659		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000501704	ENST00000501704		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000501704	ENST00000261489		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000501704	ENST00000460842		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000261489	ENST00000458659		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000261489	ENST00000501704		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000261489	ENST00000261489		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000261489	ENST00000460842		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000460842	ENST00000458659		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-3CDS	ENST00000460842	ENST00000501704		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000460842	ENST00000261489		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
intron-intron	ENST00000460842	ENST00000460842		ChiTaRS3.1			BX641351	TSC22D1	chr13	45150622	+	TSC22D1	chr13	45150176	-
Frame-shit	ENST00000257497	ENST00000228825		ChiTaRS3.1			CF126160	ANXA1	chr9	75775232	+	ARPC3	chr12	110878152	-
5CDS-intron	ENST00000257497	ENST00000471641		ChiTaRS3.1			CF126160	ANXA1	chr9	75775232	+	ARPC3	chr12	110878152	-
Frame-shit	ENST00000376911	ENST00000228825		ChiTaRS3.1			CF126160	ANXA1	chr9	75775232	+	ARPC3	chr12	110878152	-
5CDS-intron	ENST00000376911	ENST00000471641		ChiTaRS3.1			CF126160	ANXA1	chr9	75775232	+	ARPC3	chr12	110878152	-
intron-3CDS	ENST00000491192	ENST00000228825		ChiTaRS3.1			CF126160	ANXA1	chr9	75775232	+	ARPC3	chr12	110878152	-
intron-intron	ENST00000491192	ENST00000471641		ChiTaRS3.1			CF126160	ANXA1	chr9	75775232	+	ARPC3	chr12	110878152	-
intron-intron	ENST00000327483	ENST00000257899		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000327483	ENST00000548925		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-3UTR	ENST00000327483	ENST00000549147		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000327483	ENST00000547076		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000327483	ENST00000551926		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000327483	ENST00000548556		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000268679	ENST00000257899		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000268679	ENST00000548925		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-3UTR	ENST00000268679	ENST00000549147		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000268679	ENST00000547076		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000268679	ENST00000551926		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000268679	ENST00000548556		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000448839	ENST00000257899		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000448839	ENST00000548925		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-3UTR	ENST00000448839	ENST00000549147		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000448839	ENST00000547076		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000448839	ENST00000551926		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000448839	ENST00000548556		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000360302	ENST00000257899		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000360302	ENST00000548925		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-3UTR	ENST00000360302	ENST00000549147		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000360302	ENST00000547076		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000360302	ENST00000551926		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000360302	ENST00000548556		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000436887	ENST00000257899		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000436887	ENST00000548925		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-3UTR	ENST00000436887	ENST00000549147		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000436887	ENST00000547076		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000436887	ENST00000551926		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-intron	ENST00000436887	ENST00000548556		ChiTaRS3.1			BQ013058	CBFA2T3	chr16	88986873	+	BLOC1S1	chr12	56113487	-
intron-3CDS	ENST00000368096	ENST00000200453		ChiTaRS3.1			CA442157	TAGLN2	chr1	159887952	+	PPP1R15A	chr19	49377558	-
intron-3CDS	ENST00000368097	ENST00000200453		ChiTaRS3.1			CA442157	TAGLN2	chr1	159887952	+	PPP1R15A	chr19	49377558	-
intron-3CDS	ENST00000478033	ENST00000200453		ChiTaRS3.1			CA442157	TAGLN2	chr1	159887952	+	PPP1R15A	chr19	49377558	-
intron-3CDS	ENST00000320307	ENST00000200453		ChiTaRS3.1			CA442157	TAGLN2	chr1	159887952	+	PPP1R15A	chr19	49377558	-
intron-3CDS	ENST00000378300	ENST00000216181		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000378300	ENST00000475726		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000378300	ENST00000401701		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-3CDS	ENST00000378292	ENST00000216181		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000378292	ENST00000475726		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000378292	ENST00000401701		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-3CDS	ENST00000329305	ENST00000216181		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000329305	ENST00000475726		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000329305	ENST00000401701		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-3CDS	ENST00000360958	ENST00000216181		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000360958	ENST00000475726		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
intron-intron	ENST00000360958	ENST00000401701		ChiTaRS3.1			BF840453	TPM2	chr9	35689768	-	MYH9	chr22	36695090	-
5CDS-intron	ENST00000533141	ENST00000533141		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000533141	ENST00000399817		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000533141	ENST00000602569		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000399817	ENST00000533141		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000399817	ENST00000399817		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000399817	ENST00000602569		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000602569	ENST00000533141		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000602569	ENST00000399817		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
5CDS-intron	ENST00000602569	ENST00000602569		ChiTaRS3.1			BG938478	IFITM2	chr11	308328	-	IFITM2	chr11	308204	+
Frame-shit	ENST00000394997	ENST00000332981		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
Frame-shit	ENST00000394997	ENST00000555082		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
5CDS-intron	ENST00000394997	ENST00000556245		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
Frame-shit	ENST00000337138	ENST00000332981		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
Frame-shit	ENST00000337138	ENST00000555082		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
5CDS-intron	ENST00000337138	ENST00000556245		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
Frame-shit	ENST00000323441	ENST00000332981		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
Frame-shit	ENST00000323441	ENST00000555082		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
5CDS-intron	ENST00000323441	ENST00000556245		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000557538	ENST00000332981		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000557538	ENST00000555082		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-intron	ENST00000557538	ENST00000556245		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000539097	ENST00000332981		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000539097	ENST00000555082		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-intron	ENST00000539097	ENST00000556245		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000557206	ENST00000332981		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-3CDS	ENST00000557206	ENST00000555082		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
intron-intron	ENST00000557206	ENST00000556245		ChiTaRS3.1			DB202604	HIF1A	chr14	62162558	+	PRKCH	chr14	61952220	+
5UTR-intron	ENST00000369817	ENST00000369817		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000369817	ENST00000479366		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000369817	ENST00000424325		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000369817	ENST00000406022		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
3UTR-intron	ENST00000479366	ENST00000369817		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
3UTR-intron	ENST00000479366	ENST00000479366		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
3UTR-intron	ENST00000479366	ENST00000424325		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
3UTR-intron	ENST00000479366	ENST00000406022		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000424325	ENST00000369817		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000424325	ENST00000479366		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000424325	ENST00000424325		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
5UTR-intron	ENST00000424325	ENST00000406022		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
intron-intron	ENST00000406022	ENST00000369817		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
intron-intron	ENST00000406022	ENST00000479366		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
intron-intron	ENST00000406022	ENST00000424325		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
intron-intron	ENST00000406022	ENST00000406022		ChiTaRS3.1			BQ065372	RPL10	chrX	153626847	+	RPL10	chrX	153626809	-
In-frame	ENST00000505044	ENST00000449054		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000505044	ENST00000379238		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000505044	ENST00000360802		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000505044	ENST00000379239		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000505044	ENST00000539807		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000505044	ENST00000418786		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000505044	ENST00000379225		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000505044	ENST00000379235		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000505044	ENST00000480885		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000449054		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000379238		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000360802		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000379239		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000539807		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000418786		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000433351	ENST00000379225		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000433351	ENST00000379235		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000433351	ENST00000480885		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000449054		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000379238		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000360802		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000379239		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000539807		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000418786		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000264441	ENST00000379225		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000264441	ENST00000379235		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000264441	ENST00000480885		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000449054		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000379238		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000360802		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000379239		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000539807		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000418786		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
In-frame	ENST00000545138	ENST00000379225		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000545138	ENST00000379235		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
5CDS-intron	ENST00000545138	ENST00000480885		ChiTaRS3.1			DA791004	PCYOX1	chr2	70488518	+	UBAP2	chr9	33941862	-
intron-3CDS	ENST00000374975	ENST00000374005		ChiTaRS3.1			BF849961	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-3CDS	ENST00000374975	ENST00000399173		ChiTaRS3.1			BF849961	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-3CDS	ENST00000374975	ENST00000545953		ChiTaRS3.1			BF849961	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-3CDS	ENST00000374975	ENST00000374004		ChiTaRS3.1			BF849961	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-intron	ENST00000374975	ENST00000468038		ChiTaRS3.1			BF849961	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-5UTR	ENST00000314888	ENST00000461286		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-intron	ENST00000314888	ENST00000539579		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-intron	ENST00000314888	ENST00000419368		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-5UTR	ENST00000540444	ENST00000461286		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-intron	ENST00000540444	ENST00000539579		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-intron	ENST00000540444	ENST00000419368		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-5UTR	ENST00000464379	ENST00000461286		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-intron	ENST00000464379	ENST00000539579		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-intron	ENST00000464379	ENST00000419368		ChiTaRS3.1			BG982882	TLN1	chr9	35698651	-	RFPL1S	chr22	29834236	-
intron-3CDS	ENST00000216181	ENST00000405315		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-3CDS	ENST00000216181	ENST00000407032		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-intron	ENST00000216181	ENST00000485798		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-intron	ENST00000216181	ENST00000263273		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-3CDS	ENST00000475726	ENST00000405315		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-3CDS	ENST00000475726	ENST00000407032		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-intron	ENST00000475726	ENST00000485798		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-intron	ENST00000475726	ENST00000263273		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-3CDS	ENST00000401701	ENST00000405315		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-3CDS	ENST00000401701	ENST00000407032		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-intron	ENST00000401701	ENST00000485798		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
intron-intron	ENST00000401701	ENST00000263273		ChiTaRS3.1			BI028084	MYH9	chr22	36697030	-	NUCB1	chr19	49416756	+
In-frame	ENST00000297268	ENST00000297268		ChiTaRS3.1			CN390293	COL1A2	chr7	94049584	-	COL1A2	chr7	94045776	+
intron-3CDS	ENST00000465139	ENST00000383440		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-3CDS	ENST00000465139	ENST00000262126		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-intron	ENST00000465139	ENST00000540578		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-intron	ENST00000465139	ENST00000400020		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-3CDS	ENST00000483551	ENST00000383440		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-3CDS	ENST00000483551	ENST00000262126		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-intron	ENST00000483551	ENST00000540578		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-intron	ENST00000483551	ENST00000400020		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
Frame-shit	ENST00000560303	ENST00000383440		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
Frame-shit	ENST00000560303	ENST00000262126		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
5CDS-intron	ENST00000560303	ENST00000540578		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
5CDS-intron	ENST00000560303	ENST00000400020		ChiTaRS3.1			AA634993	ANP32A	chr15	69072759	-	ANKRD12	chr18	9256041	+
intron-intron	ENST00000378137	ENST00000327892		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000435534		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000330914		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000396389		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000396384		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000421473		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000549614		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000413547		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000419551		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000454620		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000422674		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000548023		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000435546		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000420400		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000453350		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000419792		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000547690		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000436335		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000425136		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000444441		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000422650		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000547695		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000454454		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000412136		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000446385		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000383564		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000551208		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000400531		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000400534		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000400530		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000436628		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000549902		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000437490		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000426754		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000425102		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000378137	ENST00000432462		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000378137	ENST00000549654		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000378137	ENST00000427480		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000378137	ENST00000424734		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000378137	ENST00000420618		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000327892		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000435534		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000330914		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000396389		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000396384		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000421473		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000549614		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000413547		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000419551		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000454620		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000422674		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000548023		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000435546		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000420400		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000453350		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000419792		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000547690		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000436335		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000425136		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000444441		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000422650		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000547695		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000454454		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000412136		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000446385		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000383564		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000551208		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000400531		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000400534		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000400530		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000436628		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000549902		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000437490		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000426754		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000425102		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-3UTR	ENST00000325718	ENST00000432462		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-intron	ENST00000325718	ENST00000549654		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-3UTR	ENST00000325718	ENST00000427480		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-3UTR	ENST00000325718	ENST00000424734		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
3UTR-3UTR	ENST00000325718	ENST00000420618		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000327892		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000435534		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000330914		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000396389		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000396384		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000421473		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000549614		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000413547		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000419551		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000454620		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000422674		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000548023		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000435546		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000420400		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000453350		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000419792		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000547690		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000436335		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000425136		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000444441		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000422650		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000547695		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000454454		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000412136		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000446385		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000383564		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000551208		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000400531		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000400534		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000400530		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000436628		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000549902		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000437490		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000426754		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000425102		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000579179	ENST00000432462		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-intron	ENST00000579179	ENST00000549654		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000579179	ENST00000427480		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000579179	ENST00000424734		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3UTR	ENST00000579179	ENST00000420618		ChiTaRS3.1			EC448406	MLLT6	chr17	36882712	+	TUBB	chr6	2025350	+
intron-3CDS	ENST00000371068	ENST00000372629		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000371068	ENST00000468024		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000371068	ENST00000472484		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000371068	ENST00000415568		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000371068	ENST00000472745		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000371068	ENST00000494801		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000491749	ENST00000372629		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000491749	ENST00000468024		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000491749	ENST00000472484		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000491749	ENST00000415568		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000491749	ENST00000472745		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000491749	ENST00000494801		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000433625	ENST00000372629		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000433625	ENST00000468024		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000433625	ENST00000472484		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000433625	ENST00000415568		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000433625	ENST00000472745		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000433625	ENST00000494801		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000538167	ENST00000372629		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000538167	ENST00000468024		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000538167	ENST00000472484		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000538167	ENST00000415568		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000538167	ENST00000472745		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
intron-3CDS	ENST00000538167	ENST00000494801		ChiTaRS3.1			BE700058	EFHC1	chr6	52367821	-	TCEAL4	chrX	102841697	-
3UTR-3UTR	ENST00000252725	ENST00000252725		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
3UTR-3UTR	ENST00000252725	ENST00000451682		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
3UTR-intron	ENST00000252725	ENST00000474880		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
3UTR-3UTR	ENST00000451682	ENST00000252725		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
3UTR-3UTR	ENST00000451682	ENST00000451682		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
3UTR-intron	ENST00000451682	ENST00000474880		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
intron-3UTR	ENST00000474880	ENST00000252725		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
intron-3UTR	ENST00000474880	ENST00000451682		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
intron-intron	ENST00000474880	ENST00000474880		ChiTaRS3.1			CB243728	ARPC1B	chr7	98992261	-	ARPC1B	chr7	98992340	+
intron-3CDS	ENST00000252675	ENST00000597629		ChiTaRS3.1			AI927524	FUT5	chr19	5894806	+	ZFP36	chr19	39899042	-
intron-3CDS	ENST00000252675	ENST00000248673		ChiTaRS3.1			AI927524	FUT5	chr19	5894806	+	ZFP36	chr19	39899042	-
intron-intron	ENST00000252675	ENST00000594045		ChiTaRS3.1			AI927524	FUT5	chr19	5894806	+	ZFP36	chr19	39899042	-
intron-3CDS	ENST00000588525	ENST00000597629		ChiTaRS3.1			AI927524	FUT5	chr19	5894806	+	ZFP36	chr19	39899042	-
intron-3CDS	ENST00000588525	ENST00000248673		ChiTaRS3.1			AI927524	FUT5	chr19	5894806	+	ZFP36	chr19	39899042	-
intron-intron	ENST00000588525	ENST00000594045		ChiTaRS3.1			AI927524	FUT5	chr19	5894806	+	ZFP36	chr19	39899042	-
intron-3CDS	ENST00000564457	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000568663	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000439021	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000412082	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000569023	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000562740	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000219168	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000567954	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-3CDS	ENST00000396052	ENST00000263253		ChiTaRS3.1			BE071569	LYRM1	chr16	20927287	+	EP300	chr22	41574542	+
intron-intron	ENST00000439249	ENST00000375135		ChiTaRS3.1			BF757898	C6orf120	chr6	170105377	-	FGD1	chrX	54493613	-
3UTR-intron	ENST00000332290	ENST00000375135		ChiTaRS3.1			BF757898	C6orf120	chr6	170105377	-	FGD1	chrX	54493613	-
intron-3CDS	ENST00000340533	ENST00000278742		ChiTaRS3.1			BF155251	CYB5A	chr18	71959146	-	ST14	chr11	130078413	-
intron-3CDS	ENST00000494131	ENST00000278742		ChiTaRS3.1			BF155251	CYB5A	chr18	71959146	-	ST14	chr11	130078413	-
intron-3CDS	ENST00000397914	ENST00000278742		ChiTaRS3.1			BF155251	CYB5A	chr18	71959146	-	ST14	chr11	130078413	-
intron-3CDS	ENST00000299438	ENST00000278742		ChiTaRS3.1			BF155251	CYB5A	chr18	71959146	-	ST14	chr11	130078413	-
intron-3CDS	ENST00000579064	ENST00000278742		ChiTaRS3.1			BF155251	CYB5A	chr18	71959146	-	ST14	chr11	130078413	-
intron-intron	ENST00000338380	ENST00000553277		ChiTaRS3.1			BE764728	SLPI	chr20	43881666	-	LRP1	chr12	57586056	-
intron-intron	ENST00000338380	ENST00000243077		ChiTaRS3.1			BE764728	SLPI	chr20	43881666	-	LRP1	chr12	57586056	-
intron-intron	ENST00000338380	ENST00000338962		ChiTaRS3.1			BE764728	SLPI	chr20	43881666	-	LRP1	chr12	57586056	-
intron-intron	ENST00000338380	ENST00000554174		ChiTaRS3.1			BE764728	SLPI	chr20	43881666	-	LRP1	chr12	57586056	-
intron-intron	ENST00000338380	ENST00000553446		ChiTaRS3.1			BE764728	SLPI	chr20	43881666	-	LRP1	chr12	57586056	-
In-frame	ENST00000262971	ENST00000262971		ChiTaRS3.1			BF087616	PIAS4	chr19	4028811	-	PIAS4	chr19	4033426	+
5CDS-intron	ENST00000262971	ENST00000596144		ChiTaRS3.1			BF087616	PIAS4	chr19	4028811	-	PIAS4	chr19	4033426	+
intron-3CDS	ENST00000596144	ENST00000262971		ChiTaRS3.1			BF087616	PIAS4	chr19	4028811	-	PIAS4	chr19	4033426	+
intron-intron	ENST00000596144	ENST00000596144		ChiTaRS3.1			BF087616	PIAS4	chr19	4028811	-	PIAS4	chr19	4033426	+
3UTR-3CDS	ENST00000378536	ENST00000378536		ChiTaRS3.1			AI949581	SKI	chr1	2238896	+	SKI	chr1	2238156	+
3UTR-intron	ENST00000378536	ENST00000478223		ChiTaRS3.1			AI949581	SKI	chr1	2238896	+	SKI	chr1	2238156	+
intron-3CDS	ENST00000478223	ENST00000378536		ChiTaRS3.1			AI949581	SKI	chr1	2238896	+	SKI	chr1	2238156	+
intron-intron	ENST00000478223	ENST00000478223		ChiTaRS3.1			AI949581	SKI	chr1	2238896	+	SKI	chr1	2238156	+
5UTR-5UTR	ENST00000267984	ENST00000267984		ChiTaRS3.1			BI548744	MESDC1	chr15	81293684	+	MESDC1	chr15	81293461	+
intron-intron	ENST00000395573	ENST00000554719		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000395573	ENST00000335750		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000395573	ENST00000557594		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000395573	ENST00000281127		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000395573	ENST00000428277		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000395573	ENST00000556003		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000216416	ENST00000554719		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000216416	ENST00000335750		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000216416	ENST00000557594		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000216416	ENST00000281127		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000216416	ENST00000428277		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000216416	ENST00000556003		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000553660	ENST00000554719		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000553660	ENST00000335750		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000553660	ENST00000557594		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000553660	ENST00000281127		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000553660	ENST00000428277		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000553660	ENST00000556003		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000557690	ENST00000554719		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000557690	ENST00000335750		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000557690	ENST00000557594		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000557690	ENST00000281127		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000557690	ENST00000428277		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000557690	ENST00000556003		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000556113	ENST00000554719		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000556113	ENST00000335750		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000556113	ENST00000557594		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000556113	ENST00000281127		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000556113	ENST00000428277		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000556113	ENST00000556003		ChiTaRS3.1			BF357043	CNIH1	chr14	54896785	+	NRXN3	chr14	80135716	-
intron-intron	ENST00000371817	ENST00000371817		ChiTaRS3.1			CV357879	COL5A1	chr9	137677779	+	COL5A1	chr9	137677631	-
intron-intron	ENST00000371817	ENST00000464187		ChiTaRS3.1			CV357879	COL5A1	chr9	137677779	+	COL5A1	chr9	137677631	-
intron-intron	ENST00000464187	ENST00000371817		ChiTaRS3.1			CV357879	COL5A1	chr9	137677779	+	COL5A1	chr9	137677631	-
intron-intron	ENST00000464187	ENST00000464187		ChiTaRS3.1			CV357879	COL5A1	chr9	137677779	+	COL5A1	chr9	137677631	-
Frame-shit	ENST00000296755	ENST00000296755		ChiTaRS3.1			BF953347	MAP1B	chr5	71493015	-	MAP1B	chr5	71492960	+
5CDS-intron	ENST00000296755	ENST00000504183		ChiTaRS3.1			BF953347	MAP1B	chr5	71493015	-	MAP1B	chr5	71492960	+
intron-3CDS	ENST00000504183	ENST00000296755		ChiTaRS3.1			BF953347	MAP1B	chr5	71493015	-	MAP1B	chr5	71492960	+
intron-intron	ENST00000504183	ENST00000504183		ChiTaRS3.1			BF953347	MAP1B	chr5	71493015	-	MAP1B	chr5	71492960	+
Frame-shit	ENST00000240423	ENST00000240423		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000240423	ENST00000427946		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000240423	ENST00000455200		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000427946	ENST00000240423		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000427946	ENST00000427946		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000427946	ENST00000455200		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000455200	ENST00000240423		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000455200	ENST00000427946		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
Frame-shit	ENST00000455200	ENST00000455200		ChiTaRS3.1			AI962489	NCAPH	chr2	97019933	-	NCAPH	chr2	97026420	-
intron-3CDS	ENST00000336665	ENST00000216181		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000336665	ENST00000475726		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000336665	ENST00000401701		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-3CDS	ENST00000304032	ENST00000216181		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000304032	ENST00000475726		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000304032	ENST00000401701		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-3CDS	ENST00000409538	ENST00000216181		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000409538	ENST00000475726		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000409538	ENST00000401701		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-3CDS	ENST00000428334	ENST00000216181		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000428334	ENST00000475726		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000428334	ENST00000401701		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-3CDS	ENST00000409457	ENST00000216181		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000409457	ENST00000475726		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
intron-intron	ENST00000409457	ENST00000401701		ChiTaRS3.1			BE693446	AGAP1	chr2	236749754	+	MYH9	chr22	36684451	-
Frame-shit	ENST00000405995	ENST00000405995		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000405995	ENST00000357304		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000405995	ENST00000458550		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000405995	ENST00000372249		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
5CDS-intron	ENST00000405995	ENST00000465931		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000357304	ENST00000405995		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000357304	ENST00000357304		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000357304	ENST00000458550		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000357304	ENST00000372249		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
5CDS-intron	ENST00000357304	ENST00000465931		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000458550	ENST00000405995		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000458550	ENST00000357304		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000458550	ENST00000458550		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000458550	ENST00000372249		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
5CDS-intron	ENST00000458550	ENST00000465931		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000372249	ENST00000405995		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000372249	ENST00000357304		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000372249	ENST00000458550		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
Frame-shit	ENST00000372249	ENST00000372249		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
5CDS-intron	ENST00000372249	ENST00000465931		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
intron-3CDS	ENST00000465931	ENST00000405995		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
intron-3CDS	ENST00000465931	ENST00000357304		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
intron-3CDS	ENST00000465931	ENST00000458550		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
intron-3CDS	ENST00000465931	ENST00000372249		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
intron-intron	ENST00000465931	ENST00000465931		ChiTaRS3.1			BI045433	PRRC2B	chr9	134362587	-	PRRC2B	chr9	134361506	+
5CDS-intron	ENST00000311117	ENST00000340950		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000311117	ENST00000396901		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000311117	ENST00000352614		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000311117	ENST00000606253		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000311117	ENST00000585544		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5UTR-intron	ENST00000334914	ENST00000340950		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5UTR-5UTR	ENST00000334914	ENST00000396901		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5UTR-5UTR	ENST00000334914	ENST00000352614		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5UTR-5UTR	ENST00000334914	ENST00000606253		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5UTR-intron	ENST00000334914	ENST00000585544		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000257745	ENST00000340950		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000257745	ENST00000396901		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000257745	ENST00000352614		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000257745	ENST00000606253		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000257745	ENST00000585544		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000334877	ENST00000340950		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000334877	ENST00000396901		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000334877	ENST00000352614		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000334877	ENST00000606253		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000334877	ENST00000585544		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000476671	ENST00000340950		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000476671	ENST00000396901		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000476671	ENST00000352614		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-5UTR	ENST00000476671	ENST00000606253		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
5CDS-intron	ENST00000476671	ENST00000585544		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
intron-intron	ENST00000480368	ENST00000340950		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
intron-5UTR	ENST00000480368	ENST00000396901		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
intron-5UTR	ENST00000480368	ENST00000352614		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
intron-5UTR	ENST00000480368	ENST00000606253		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
intron-intron	ENST00000480368	ENST00000585544		ChiTaRS3.1			AW027485	KMT2E	chr7	104730499	-	NFKBID	chr19	36388634	+
intron-3CDS	ENST00000542285	ENST00000595618		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-3CDS	ENST00000542285	ENST00000594824		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-3CDS	ENST00000542285	ENST00000397274		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-intron	ENST00000542285	ENST00000593411		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-3CDS	ENST00000602298	ENST00000595618		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-3CDS	ENST00000602298	ENST00000594824		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-3CDS	ENST00000602298	ENST00000397274		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
intron-intron	ENST00000602298	ENST00000593411		ChiTaRS3.1			BE829955	C1R	chr12	7188008	+	MYO9B	chr19	17291776	+
3UTR-3CDS	ENST00000513615	ENST00000328771		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
3UTR-intron	ENST00000513615	ENST00000471451		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
Frame-shit	ENST00000281243	ENST00000328771		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
5CDS-intron	ENST00000281243	ENST00000471451		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
Frame-shit	ENST00000428702	ENST00000328771		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
5CDS-intron	ENST00000428702	ENST00000471451		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
intron-3CDS	ENST00000508623	ENST00000328771		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
intron-intron	ENST00000508623	ENST00000471451		ChiTaRS3.1			BF375181	QDPR	chr4	17492289	-	DHX34	chr19	47865909	-
intron-3UTR	ENST00000469379	ENST00000164024		ChiTaRS3.1			BM127436	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000469379	ENST00000544264		ChiTaRS3.1			BM127436	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000331808	ENST00000164024		ChiTaRS3.1			BM127436	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000331808	ENST00000544264		ChiTaRS3.1			BM127436	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-intron	ENST00000357716	ENST00000437232		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000357716	ENST00000605833		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000486284	ENST00000437232		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000486284	ENST00000605833		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000389336	ENST00000437232		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000389336	ENST00000605833		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000402647	ENST00000437232		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000402647	ENST00000605833		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000403881	ENST00000437232		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000403881	ENST00000605833		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000458641	ENST00000437232		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
intron-intron	ENST00000458641	ENST00000605833		ChiTaRS3.1			DA713133	GRM7	chr3	7220012	+	VIM-AS1	chr10	17271278	+
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
Frame-shit	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF272380	KMT2A	chr11	118359411	+	KMT2A	chr11	118352668	-
intron-5UTR	ENST00000264899	ENST00000341189		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-5UTR	ENST00000264899	ENST00000471229		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-intron	ENST00000264899	ENST00000477980		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-intron	ENST00000264899	ENST00000537169		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-5UTR	ENST00000325942	ENST00000341189		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-5UTR	ENST00000325942	ENST00000471229		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-intron	ENST00000325942	ENST00000477980		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-intron	ENST00000325942	ENST00000537169		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-5UTR	ENST00000264895	ENST00000341189		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-5UTR	ENST00000264895	ENST00000471229		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-intron	ENST00000264895	ENST00000477980		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-intron	ENST00000264895	ENST00000537169		ChiTaRS3.1			BM825822	FRAS1	chr4	79102588	-	ARMCX3	chrX	100878152	+
intron-3CDS	ENST00000401604	ENST00000392935		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000401604	ENST00000522572		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000401604	ENST00000521158		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000401604	ENST00000022615		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000373985	ENST00000392935		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373985	ENST00000522572		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373985	ENST00000521158		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373985	ENST00000022615		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000373980	ENST00000392935		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373980	ENST00000522572		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373980	ENST00000521158		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373980	ENST00000022615		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000373975	ENST00000392935		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373975	ENST00000522572		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373975	ENST00000521158		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373975	ENST00000022615		ChiTaRS3.1			BF873327	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
Frame-shit	ENST00000358024	ENST00000358024		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000358024	ENST00000545499		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000358024	ENST00000495538		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000358024	ENST00000330675		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000358024	ENST00000329800		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
Frame-shit	ENST00000545499	ENST00000358024		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000545499	ENST00000545499		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000545499	ENST00000495538		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000545499	ENST00000330675		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000545499	ENST00000329800		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
3UTR-3CDS	ENST00000495538	ENST00000358024		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
3UTR-intron	ENST00000495538	ENST00000545499		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
3UTR-intron	ENST00000495538	ENST00000495538		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
3UTR-intron	ENST00000495538	ENST00000330675		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
3UTR-intron	ENST00000495538	ENST00000329800		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
Frame-shit	ENST00000330675	ENST00000358024		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000330675	ENST00000545499		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000330675	ENST00000495538		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000330675	ENST00000330675		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000330675	ENST00000329800		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
Frame-shit	ENST00000329800	ENST00000358024		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000329800	ENST00000545499		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000329800	ENST00000495538		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000329800	ENST00000330675		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
5CDS-intron	ENST00000329800	ENST00000329800		ChiTaRS3.1			DA808828	TMCC2	chr1	205238439	-	TMCC2	chr1	205197849	+
intron-3CDS	ENST00000254480	ENST00000254480		ChiTaRS3.1			BP371110	SMARCC1	chr3	47651588	-	SMARCC1	chr3	47823171	-
intron-intron	ENST00000254480	ENST00000425518		ChiTaRS3.1			BP371110	SMARCC1	chr3	47651588	-	SMARCC1	chr3	47823171	-
intron-3CDS	ENST00000425518	ENST00000254480		ChiTaRS3.1			BP371110	SMARCC1	chr3	47651588	-	SMARCC1	chr3	47823171	-
intron-intron	ENST00000425518	ENST00000425518		ChiTaRS3.1			BP371110	SMARCC1	chr3	47651588	-	SMARCC1	chr3	47823171	-
5CDS-5UTR	ENST00000534358	ENST00000437099		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000323816		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000432992		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000540214		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000585266		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000580865		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000583882		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000542249		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000396115		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000579158		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000578655		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000437099		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000323816		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000432992		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000540214		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000585266		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000580865		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000583882		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000542249		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000396115		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000579158		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000578655		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000437099		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000323816		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000432992		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000540214		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000585266		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000354520	ENST00000580865		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000354520	ENST00000583882		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000542249		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000396115		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000579158		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000354520	ENST00000578655		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000437099		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000323816		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000432992		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000540214		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000585266		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000420751	ENST00000580865		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-intron	ENST00000420751	ENST00000583882		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000542249		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000396115		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000579158		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
intron-5UTR	ENST00000420751	ENST00000578655		ChiTaRS3.1			AF231998	KMT2A	chr11	118355690	+	GAS7	chr17	9923216	-
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE932597	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
In-frame	ENST00000400098	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400098	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400098	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400098	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400098	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400098	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400098	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400098	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400098	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400100	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400100	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400100	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400100	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400100	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400100	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400100	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400100	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400100	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400097	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400097	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000400097	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400097	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400097	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400097	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400097	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400097	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000400097	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-3CDS	ENST00000553597	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-3CDS	ENST00000553597	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-3CDS	ENST00000553597	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-intron	ENST00000553597	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-intron	ENST00000553597	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-intron	ENST00000553597	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-intron	ENST00000553597	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-intron	ENST00000553597	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-intron	ENST00000553597	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000390687	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000390687	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000390687	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000390687	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000390687	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000390687	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000390687	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000390687	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000390687	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000346403	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000346403	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000346403	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000346403	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000346403	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000346403	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000346403	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000346403	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000346403	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000554227	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000554227	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000554227	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000554227	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000554227	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000554227	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000554227	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000554227	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000554227	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000577565	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000577565	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000577565	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000577565	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000577565	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000577565	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000577565	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000577565	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000577565	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000444203	ENST00000400098		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000444203	ENST00000400100		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
In-frame	ENST00000444203	ENST00000400097		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000444203	ENST00000553597		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000444203	ENST00000390687		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000444203	ENST00000346403		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000444203	ENST00000554227		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000444203	ENST00000577565		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
5CDS-intron	ENST00000444203	ENST00000444203		ChiTaRS3.1			BI759879	SNRPN	chr15	25223391	+	SNRPN	chr15	25223383	-
intron-3CDS	ENST00000346248	ENST00000249842		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000346248	ENST00000395118		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000421115	ENST00000249842		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000421115	ENST00000395118		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000462406	ENST00000249842		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000462406	ENST00000395118		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000435907	ENST00000249842		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000435907	ENST00000395118		ChiTaRS3.1			BE707961	CHST15	chr10	125804472	+	ISLR	chr15	74468481	-
intron-3CDS	ENST00000364938	ENST00000511367		ChiTaRS3.1			DA644608	SNHG3	chr1	28834672	+	DROSHA	chr5	31486670	-
intron-3CDS	ENST00000364938	ENST00000442743		ChiTaRS3.1			DA644608	SNHG3	chr1	28834672	+	DROSHA	chr5	31486670	-
intron-3CDS	ENST00000364938	ENST00000344624		ChiTaRS3.1			DA644608	SNHG3	chr1	28834672	+	DROSHA	chr5	31486670	-
intron-3CDS	ENST00000364938	ENST00000513349		ChiTaRS3.1			DA644608	SNHG3	chr1	28834672	+	DROSHA	chr5	31486670	-
intron-intron	ENST00000364938	ENST00000504361		ChiTaRS3.1			DA644608	SNHG3	chr1	28834672	+	DROSHA	chr5	31486670	-
3UTR-5UTR	ENST00000299543	ENST00000221930		ChiTaRS3.1			BF765131	CTDP1	chr18	77513810	+	TGFB1	chr19	41859399	+
3UTR-5UTR	ENST00000075430	ENST00000221930		ChiTaRS3.1			BF765131	CTDP1	chr18	77513810	+	TGFB1	chr19	41859399	+
intron-5UTR	ENST00000587623	ENST00000221930		ChiTaRS3.1			BF765131	CTDP1	chr18	77513810	+	TGFB1	chr19	41859399	+
intron-intron	ENST00000276282	ENST00000398540		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000276282	ENST00000542259		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000276282	ENST00000497757		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000276282	ENST00000478263		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000520091	ENST00000398540		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000520091	ENST00000542259		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000520091	ENST00000497757		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
intron-intron	ENST00000520091	ENST00000478263		ChiTaRS3.1			AI765155	MFHAS1	chr8	8643565	+	FRMD4B	chr3	69318014	+
5CDS-3UTR	ENST00000400921	ENST00000455537		ChiTaRS3.1			DR978591	PRKCZ	chr1	2087490	+	KIF5A	chr12	57980345	+
5CDS-intron	ENST00000400921	ENST00000286452		ChiTaRS3.1			DR978591	PRKCZ	chr1	2087490	+	KIF5A	chr12	57980345	+
5CDS-3UTR	ENST00000400920	ENST00000455537		ChiTaRS3.1			DR978591	PRKCZ	chr1	2087490	+	KIF5A	chr12	57980345	+
5CDS-intron	ENST00000400920	ENST00000286452		ChiTaRS3.1			DR978591	PRKCZ	chr1	2087490	+	KIF5A	chr12	57980345	+
3UTR-3UTR	ENST00000479263	ENST00000455537		ChiTaRS3.1			DR978591	PRKCZ	chr1	2087490	+	KIF5A	chr12	57980345	+
3UTR-intron	ENST00000479263	ENST00000286452		ChiTaRS3.1			DR978591	PRKCZ	chr1	2087490	+	KIF5A	chr12	57980345	+
intron-3UTR	ENST00000244711	ENST00000244711		ChiTaRS3.1			BM550317	MEA1	chr6	42980909	+	MEA1	chr6	42980059	-
Frame-shit	ENST00000406337	ENST00000262367		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
Frame-shit	ENST00000406337	ENST00000382070		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
In-frame	ENST00000265713	ENST00000262367		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
In-frame	ENST00000265713	ENST00000382070		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
In-frame	ENST00000396930	ENST00000262367		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
In-frame	ENST00000396930	ENST00000382070		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
intron-3CDS	ENST00000485568	ENST00000262367		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
intron-3CDS	ENST00000485568	ENST00000382070		ChiTaRS3.1			AJ251843	KAT6A	chr8	41794774	-	CREBBP	chr16	3901011	-
intron-3UTR	ENST00000374820	ENST00000374820		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-intron	ENST00000374820	ENST00000452740		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-intron	ENST00000374820	ENST00000480175		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-3UTR	ENST00000452740	ENST00000374820		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-intron	ENST00000452740	ENST00000452740		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-intron	ENST00000452740	ENST00000480175		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-3UTR	ENST00000480175	ENST00000374820		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-intron	ENST00000480175	ENST00000452740		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
intron-intron	ENST00000480175	ENST00000480175		ChiTaRS3.1			AA557668	PIGU	chr20	33148398	-	PIGU	chr20	33148477	+
5UTR-3CDS	ENST00000289788	ENST00000545111		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-3CDS	ENST00000289788	ENST00000394232		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-intron	ENST00000289788	ENST00000557291		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-intron	ENST00000289788	ENST00000330276		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-3CDS	ENST00000486481	ENST00000545111		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-3CDS	ENST00000486481	ENST00000394232		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-intron	ENST00000486481	ENST00000557291		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
5UTR-intron	ENST00000486481	ENST00000330276		ChiTaRS3.1			DA248680	ZSCAN23	chr6	28411174	-	SV2B	chr15	91824957	+
3UTR-3UTR	ENST00000448841	ENST00000448841		ChiTaRS3.1			BF930557	WBP1L	chr10	104574097	+	WBP1L	chr10	104573739	+
3UTR-3UTR	ENST00000448841	ENST00000369889		ChiTaRS3.1			BF930557	WBP1L	chr10	104574097	+	WBP1L	chr10	104573739	+
3UTR-3UTR	ENST00000369889	ENST00000448841		ChiTaRS3.1			BF930557	WBP1L	chr10	104574097	+	WBP1L	chr10	104573739	+
3UTR-3UTR	ENST00000369889	ENST00000369889		ChiTaRS3.1			BF930557	WBP1L	chr10	104574097	+	WBP1L	chr10	104573739	+
intron-intron	ENST00000575235	ENST00000575235		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000293829		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000572907		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000575398		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000575082		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575235		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000293829		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000572907		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575398		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575082		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575235		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000293829		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000572907		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575398		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575082		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575235		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000293829		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000572907		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575398		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575082		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575235		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000293829		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000572907		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575398		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575082		ChiTaRS3.1			AW196894	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000598155	ENST00000598155		ChiTaRS3.1			BF093762	SYMPK	chr19	46319400	-	SYMPK	chr19	46328583	-
intron-intron	ENST00000598155	ENST00000245934		ChiTaRS3.1			BF093762	SYMPK	chr19	46319400	-	SYMPK	chr19	46328583	-
intron-intron	ENST00000245934	ENST00000598155		ChiTaRS3.1			BF093762	SYMPK	chr19	46319400	-	SYMPK	chr19	46328583	-
intron-intron	ENST00000245934	ENST00000245934		ChiTaRS3.1			BF093762	SYMPK	chr19	46319400	-	SYMPK	chr19	46328583	-
intron-intron	ENST00000575235	ENST00000575235		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000293829		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000572907		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000575398		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000575082		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575235		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000293829		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000572907		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575398		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575082		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575235		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000293829		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000572907		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575398		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575082		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575235		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000293829		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000572907		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575398		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575082		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575235		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000293829		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000572907		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575398		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575082		ChiTaRS3.1			BE502163	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
5CDS-3UTR	ENST00000316156	ENST00000340740		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000316156	ENST00000598904		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000316156	ENST00000591812		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000316156	ENST00000602238		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-3UTR	ENST00000373150	ENST00000340740		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373150	ENST00000598904		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373150	ENST00000591812		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373150	ENST00000602238		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-3UTR	ENST00000373151	ENST00000340740		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373151	ENST00000598904		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373151	ENST00000591812		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373151	ENST00000602238		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
intron-3UTR	ENST00000474796	ENST00000340740		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
intron-intron	ENST00000474796	ENST00000598904		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
intron-intron	ENST00000474796	ENST00000591812		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
intron-intron	ENST00000474796	ENST00000602238		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-3UTR	ENST00000373148	ENST00000340740		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373148	ENST00000598904		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373148	ENST00000591812		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
5CDS-intron	ENST00000373148	ENST00000602238		ChiTaRS3.1			BI025071	MAP7D1	chr1	36644420	+	RINL	chr19	39359502	-
intron-intron	ENST00000358252	ENST00000545844		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000567887		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000372915		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000361689		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000539005		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000317713		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000564288		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000289893		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000536367		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000484793		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000602421		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000358252	ENST00000476350		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000545844		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000567887		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000372915		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000361689		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000539005		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000317713		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000564288		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000289893		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000536367		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000484793		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000602421		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000532437	ENST00000476350		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000545844		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000567887		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000372915		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000361689		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000539005		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000317713		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000564288		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000289893		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000536367		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000484793		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000602421		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-intron	ENST00000530920	ENST00000476350		ChiTaRS3.1			BF810602	TNKS1BP1	chr11	57077371	+	MACF1	chr1	39806207	-
intron-3CDS	ENST00000343638	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000343638	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000343638	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000302904	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000302904	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000302904	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000527034	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000527034	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000527034	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000533177	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000533177	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000533177	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000436088	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000436088	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000436088	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000393606	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000393606	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000393606	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000529383	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000529383	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000529383	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000526094	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000526094	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000526094	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000537550	ENST00000216181		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000537550	ENST00000475726		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-intron	ENST00000537550	ENST00000401701		ChiTaRS3.1			BG979531	UBTF	chr17	42289083	+	MYH9	chr22	36697672	-
intron-3CDS	ENST00000607838	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000607838	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000607838	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000607838	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000607838	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000591724	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000591724	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000591724	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000591724	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000591724	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000332065	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000332065	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000332065	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000332065	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000332065	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000589210	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000589210	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000589210	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000589210	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000589210	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000335146	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000335146	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000335146	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000335146	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000335146	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000467929	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000467929	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000467929	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000467929	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000467929	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000405575	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000405575	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000405575	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000405575	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000405575	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000411744	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000411744	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000411744	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000411744	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000411744	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000406660	ENST00000336967		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000406660	ENST00000391771		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000406660	ENST00000391770		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000406660	ENST00000391769		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
intron-3CDS	ENST00000406660	ENST00000391768		ChiTaRS3.1			BE838171	EXOC7	chr17	74084865	+	MYADM	chr19	54377729	+
In-frame	ENST00000403681	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000403681	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000541363	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000393577	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000393578	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000425208	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000536545	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000487861		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000471583		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000487270		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000488612		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000390683		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000354636	ENST00000469165		ChiTaRS3.1			AY138859	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-intron	ENST00000327987	ENST00000399537		ChiTaRS3.1			BE093173	IGDCC3	chr15	65622069	-	TNRC18	chr7	5432887	-
5CDS-intron	ENST00000327987	ENST00000430969		ChiTaRS3.1			BE093173	IGDCC3	chr15	65622069	-	TNRC18	chr7	5432887	-
5CDS-intron	ENST00000327987	ENST00000399434		ChiTaRS3.1			BE093173	IGDCC3	chr15	65622069	-	TNRC18	chr7	5432887	-
intron-intron	ENST00000559231	ENST00000399537		ChiTaRS3.1			BE093173	IGDCC3	chr15	65622069	-	TNRC18	chr7	5432887	-
intron-intron	ENST00000559231	ENST00000430969		ChiTaRS3.1			BE093173	IGDCC3	chr15	65622069	-	TNRC18	chr7	5432887	-
intron-intron	ENST00000559231	ENST00000399434		ChiTaRS3.1			BE093173	IGDCC3	chr15	65622069	-	TNRC18	chr7	5432887	-
intron-3CDS	ENST00000331925	ENST00000341911		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000316528		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000442647		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000367814		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000525369		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000534121		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000533624		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000534044		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000528774		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000531845		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000527615		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000420123		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000341911		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000316528		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000442647		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000367814		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000525369		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000534121		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000533624		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000534044		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000528774		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000531845		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000527615		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000420123		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000341911		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000316528		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000442647		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000367814		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000525369		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000534121		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000533624		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000534044		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000528774		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000531845		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000527615		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000420123		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000341911		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000316528		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000442647		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000367814		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000525369		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000534121		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000533624		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000534044		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000528774		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000531845		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000527615		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000420123		ChiTaRS3.1			BE091998	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000373277	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000373277	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000373274	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000420366	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000429553	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000373276	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000314830	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000373277		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000373274		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000420366		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000429553		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000373276		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000314830		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000471939	ENST00000471939		ChiTaRS3.1			BF988265	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-intron	ENST00000517298	ENST00000517298		ChiTaRS3.1			BF334232	CA13	chr8	86272338	-	CA13	chr8	86272269	+
intron-intron	ENST00000517298	ENST00000321764		ChiTaRS3.1			BF334232	CA13	chr8	86272338	-	CA13	chr8	86272269	+
intron-intron	ENST00000321764	ENST00000517298		ChiTaRS3.1			BF334232	CA13	chr8	86272338	-	CA13	chr8	86272269	+
intron-intron	ENST00000321764	ENST00000321764		ChiTaRS3.1			BF334232	CA13	chr8	86272338	-	CA13	chr8	86272269	+
intron-intron	ENST00000394906	ENST00000338244		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394906	ENST00000379333		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394906	ENST00000424750		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394906	ENST00000468355		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394908	ENST00000338244		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394908	ENST00000379333		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394908	ENST00000424750		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000394908	ENST00000468355		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000585169	ENST00000338244		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000585169	ENST00000379333		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000585169	ENST00000424750		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000585169	ENST00000468355		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000577789	ENST00000338244		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000577789	ENST00000379333		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000577789	ENST00000424750		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-intron	ENST00000577789	ENST00000468355		ChiTaRS3.1			BF088490	FLOT2	chr17	27209407	+	SLC23A2	chr20	4943281	-
intron-3CDS	ENST00000372530	ENST00000252050		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-3CDS	ENST00000372530	ENST00000354495		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-3CDS	ENST00000372530	ENST00000372647		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-intron	ENST00000372530	ENST00000502937		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
3UTR-3CDS	ENST00000443426	ENST00000252050		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
3UTR-3CDS	ENST00000443426	ENST00000354495		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
3UTR-3CDS	ENST00000443426	ENST00000372647		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
3UTR-intron	ENST00000443426	ENST00000502937		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-3CDS	ENST00000244533	ENST00000252050		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-3CDS	ENST00000244533	ENST00000354495		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-3CDS	ENST00000244533	ENST00000372647		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-intron	ENST00000244533	ENST00000502937		ChiTaRS3.1			DA875626	ABCC10	chr6	43395708	+	CUL9	chr6	43182814	+
intron-intron	ENST00000326195	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000326195	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000376545	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000396515	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457111	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000452530	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000416932	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000470464	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000419893	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000448939	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457970	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000475528	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000457078	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000412443	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000546690	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421608	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000486105	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383588	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000383587	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000400609	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000485585	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000426219	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000421042	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000552867	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000454094	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000494413	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000423247	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
5CDS-intron	ENST00000420257	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000456791	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000326195		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000376545		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000396515		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000457111		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000452530		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000416932		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000470464		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000419893		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000448939		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000457970		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000475528		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000457078		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000412443		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000546690		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000421608		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000486105		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000383588		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000383587		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000400609		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000485585		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000426219		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000421042		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000552867		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000454094		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000494413		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000423247		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000420257		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000456791		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
intron-intron	ENST00000495194	ENST00000495194		ChiTaRS3.1			BE673306	ABCF1	chr6	1878550	-	ABCF1	chr6	1891569	-
In-frame	ENST00000398215	ENST00000407106		ChiTaRS3.1			BU734913	CRYBB2	chr22	25627675	-	FAH	chr15	80469916	-
In-frame	ENST00000398215	ENST00000261755		ChiTaRS3.1			BU734913	CRYBB2	chr22	25627675	-	FAH	chr15	80469916	-
In-frame	ENST00000398215	ENST00000561421		ChiTaRS3.1			BU734913	CRYBB2	chr22	25627675	-	FAH	chr15	80469916	-
In-frame	ENST00000398215	ENST00000539156		ChiTaRS3.1			BU734913	CRYBB2	chr22	25627675	-	FAH	chr15	80469916	-
5CDS-intron	ENST00000398215	ENST00000558627		ChiTaRS3.1			BU734913	CRYBB2	chr22	25627675	-	FAH	chr15	80469916	-
Frame-shit	ENST00000259396	ENST00000259396		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
5CDS-intron	ENST00000259396	ENST00000538816		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
5CDS-intron	ENST00000259396	ENST00000477456		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
intron-3CDS	ENST00000538816	ENST00000259396		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
intron-intron	ENST00000538816	ENST00000538816		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
intron-intron	ENST00000538816	ENST00000477456		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
3UTR-3CDS	ENST00000477456	ENST00000259396		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
3UTR-intron	ENST00000477456	ENST00000538816		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
3UTR-intron	ENST00000477456	ENST00000477456		ChiTaRS3.1			AA659179	ORM1	chr9	117087389	+	ORM1	chr9	117088605	-
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000354520	ENST00000395146		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000354520	ENST00000307808		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AF487905	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000230461	ENST00000481781		ChiTaRS3.1			CN334376	TMEM30A	chr6	75965834	-	INS-IGF2	chr11	2153077	-
intron-intron	ENST00000230461	ENST00000397270		ChiTaRS3.1			CN334376	TMEM30A	chr6	75965834	-	INS-IGF2	chr11	2153077	-
intron-intron	ENST00000370050	ENST00000481781		ChiTaRS3.1			CN334376	TMEM30A	chr6	75965834	-	INS-IGF2	chr11	2153077	-
intron-intron	ENST00000370050	ENST00000397270		ChiTaRS3.1			CN334376	TMEM30A	chr6	75965834	-	INS-IGF2	chr11	2153077	-
intron-intron	ENST00000475111	ENST00000481781		ChiTaRS3.1			CN334376	TMEM30A	chr6	75965834	-	INS-IGF2	chr11	2153077	-
intron-intron	ENST00000475111	ENST00000397270		ChiTaRS3.1			CN334376	TMEM30A	chr6	75965834	-	INS-IGF2	chr11	2153077	-
intron-intron	ENST00000382865	ENST00000379339		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000382865	ENST00000448924		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000382865	ENST00000294576		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000382865	ENST00000421241		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000382865	ENST00000482816		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000382865	ENST00000437760		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000382865	ENST00000379320		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000382865	ENST00000379319		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000511885	ENST00000379339		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000511885	ENST00000448924		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000511885	ENST00000294576		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000511885	ENST00000421241		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000511885	ENST00000482816		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000511885	ENST00000437760		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000511885	ENST00000379320		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000511885	ENST00000379319		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000515357	ENST00000379339		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000515357	ENST00000448924		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000515357	ENST00000294576		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000515357	ENST00000421241		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000515357	ENST00000482816		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-5UTR	ENST00000515357	ENST00000437760		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000515357	ENST00000379320		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-intron	ENST00000515357	ENST00000379319		ChiTaRS3.1			DA066689	POLN	chr4	2243792	-	C1orf159	chr1	1051568	-
intron-3UTR	ENST00000391854	ENST00000371227		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000371249		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000306402		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000353505		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000371246		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000347291		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000393949		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000391854	ENST00000371247		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000607232		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000371245		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000361941		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000277982		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000354106		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000371239		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000371241		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000391854	ENST00000474353		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000371227		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000371249		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000306402		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000353505		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000371246		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000347291		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000393949		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000450593	ENST00000371247		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000607232		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000371245		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000361941		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000277982		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000354106		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000371239		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000371241		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000450593	ENST00000474353		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000371227		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000371249		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000306402		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000353505		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000371246		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000347291		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000393949		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366598	ENST00000371247		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000607232		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000371245		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000361941		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000277982		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000354106		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000371239		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000371241		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366598	ENST00000474353		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000371227		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000371249		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000306402		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000353505		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000371246		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000347291		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000393949		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000366597	ENST00000371247		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000607232		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000371245		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000361941		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000277982		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000354106		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000371239		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000371241		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000366597	ENST00000474353		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000371227		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000371249		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000306402		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000353505		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000371246		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000347291		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000393949		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000484517	ENST00000371247		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000607232		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000371245		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000361941		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000277982		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000354106		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000371239		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000371241		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-intron	ENST00000484517	ENST00000474353		ChiTaRS3.1			AW888605	GNG4	chr1	235714929	-	SORBS1	chr10	97072814	-
intron-3UTR	ENST00000252891	ENST00000407418		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000252891	ENST00000216083		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000598779	ENST00000407418		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000598779	ENST00000216083		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000540131	ENST00000407418		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000540131	ENST00000216083		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000599594	ENST00000407418		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000599594	ENST00000216083		ChiTaRS3.1			BE221181	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
5UTR-3CDS	ENST00000360909	ENST00000258886		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-3UTR	ENST00000360909	ENST00000560440		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-intron	ENST00000360909	ENST00000559427		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-3CDS	ENST00000351081	ENST00000258886		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-3UTR	ENST00000351081	ENST00000560440		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-intron	ENST00000351081	ENST00000559427		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-3CDS	ENST00000395125	ENST00000258886		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-3UTR	ENST00000395125	ENST00000560440		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-intron	ENST00000395125	ENST00000559427		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-3CDS	ENST00000556135	ENST00000258886		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-3UTR	ENST00000556135	ENST00000560440		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
5UTR-intron	ENST00000556135	ENST00000559427		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-3CDS	ENST00000553966	ENST00000258886		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-3UTR	ENST00000553966	ENST00000560440		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-intron	ENST00000553966	ENST00000559427		ChiTaRS3.1			DA502239	DAAM1	chr14	59655486	+	IREB2	chr15	78768528	+
intron-3CDS	ENST00000405201	ENST00000396743		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000405201	ENST00000156084		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000405201	ENST00000376488		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000405201	ENST00000428668		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-5UTR	ENST00000405201	ENST00000484499		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404621	ENST00000396743		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404621	ENST00000156084		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404621	ENST00000376488		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404621	ENST00000428668		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-5UTR	ENST00000404621	ENST00000484499		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404121	ENST00000396743		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404121	ENST00000156084		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404121	ENST00000376488		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000404121	ENST00000428668		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-5UTR	ENST00000404121	ENST00000484499		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000356219	ENST00000396743		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000356219	ENST00000156084		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000356219	ENST00000376488		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000356219	ENST00000428668		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-5UTR	ENST00000356219	ENST00000484499		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000397355	ENST00000396743		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000397355	ENST00000156084		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000397355	ENST00000376488		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000397355	ENST00000428668		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-5UTR	ENST00000397355	ENST00000484499		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000429285	ENST00000396743		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000429285	ENST00000156084		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000429285	ENST00000376488		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-3CDS	ENST00000429285	ENST00000428668		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-5UTR	ENST00000429285	ENST00000484499		ChiTaRS3.1			BF803065	NCOR2	chr12	124887000	+	OTUD5	chrX	48801477	+
intron-intron	ENST00000395762	ENST00000594202		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000389133		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000252771		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000600676		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000599236		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000596536		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000595033		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000539407		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000596951		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000395762	ENST00000597512		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000594202		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000389133		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000252771		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000600676		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000599236		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000596536		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000595033		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000539407		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000596951		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000543915	ENST00000597512		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000594202		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000389133		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000252771		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000600676		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000599236		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000596536		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000595033		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000539407		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000596951		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000449195	ENST00000597512		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000594202		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000389133		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000252771		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000600676		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000599236		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000596536		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000595033		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000539407		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000596951		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000380922	ENST00000597512		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000594202		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000389133		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000252771		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000600676		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000599236		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000596536		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000595033		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000539407		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000596951		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000170630	ENST00000597512		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000594202		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000389133		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000252771		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000600676		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000599236		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000596536		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000595033		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000539407		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000596951		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-intron	ENST00000565915	ENST00000597512		ChiTaRS3.1			BF896822	IL4R	chr16	27357787	-	FCHO1	chr19	17893203	+
intron-3CDS	ENST00000252506	ENST00000392882		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000252506	ENST00000358655		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000252506	ENST00000355338		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000252506	ENST00000344102		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000252506	ENST00000557135		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000252506	ENST00000556645		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-intron	ENST00000252506	ENST00000554084		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000375769	ENST00000392882		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000375769	ENST00000358655		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000375769	ENST00000355338		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000375769	ENST00000344102		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000375769	ENST00000557135		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000375769	ENST00000556645		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-intron	ENST00000375769	ENST00000554084		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000494726	ENST00000392882		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000494726	ENST00000358655		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000494726	ENST00000355338		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000494726	ENST00000344102		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000494726	ENST00000557135		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-3CDS	ENST00000494726	ENST00000556645		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-intron	ENST00000494726	ENST00000554084		ChiTaRS3.1			BF988254	GADD45G	chr9	92219927	-	WARS	chr14	100808798	-
intron-intron	ENST00000231061	ENST00000330978		ChiTaRS3.1			BE928982	SPARC	chr5	151043775	-	BOLA2	chr16	30078618	+
intron-intron	ENST00000537849	ENST00000330978		ChiTaRS3.1			BE928982	SPARC	chr5	151043775	-	BOLA2	chr16	30078618	+
intron-intron	ENST00000512487	ENST00000463441		ChiTaRS3.1			AI732193	LINC00290	chr4	181994169	-	LRRC61	chr7	150034797	-
intron-3UTR	ENST00000512487	ENST00000323078		ChiTaRS3.1			AI732193	LINC00290	chr4	181994169	-	LRRC61	chr7	150034797	-
intron-3UTR	ENST00000512487	ENST00000359623		ChiTaRS3.1			AI732193	LINC00290	chr4	181994169	-	LRRC61	chr7	150034797	-
intron-intron	ENST00000512487	ENST00000493307		ChiTaRS3.1			AI732193	LINC00290	chr4	181994169	-	LRRC61	chr7	150034797	-
5CDS-3UTR	ENST00000378564	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378564	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378564	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378564	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000378564	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321584	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321584	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321584	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321584	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000321584	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321603	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321603	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321603	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000321603	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000321603	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000342854	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000342854	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000342854	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000342854	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000342854	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395029	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395029	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395029	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395029	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000395029	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000432532	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000432532	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000432532	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000432532	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000432532	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378560	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378560	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378560	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000378560	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000378560	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000520958	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000520958	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000520958	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000520958	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000520958	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000518915	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000518915	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000518915	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000518915	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000518915	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395023	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395023	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395023	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-3UTR	ENST00000395023	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
5CDS-5UTR	ENST00000395023	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
intron-3UTR	ENST00000517478	ENST00000476873		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
intron-3UTR	ENST00000517478	ENST00000368701		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
intron-3UTR	ENST00000517478	ENST00000368702		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
intron-3UTR	ENST00000517478	ENST00000344616		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
intron-5UTR	ENST00000517478	ENST00000368700		ChiTaRS3.1			BF799331	TCF7	chr5	133451685	+	S100A14	chr1	153587333	+
intron-3CDS	ENST00000374975	ENST00000374005		ChiTaRS3.1			BF849952	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-3CDS	ENST00000374975	ENST00000399173		ChiTaRS3.1			BF849952	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-3CDS	ENST00000374975	ENST00000545953		ChiTaRS3.1			BF849952	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-3CDS	ENST00000374975	ENST00000374004		ChiTaRS3.1			BF849952	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
intron-intron	ENST00000374975	ENST00000468038		ChiTaRS3.1			BF849952	HLA-DRB5	chr6	32552203	-	FGR	chr1	27942120	+
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			DQ912588	BCR	chr22	23524427	+	ABL1	chr9	133747512	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			DQ912588	BCR	chr22	23524427	+	ABL1	chr9	133747512	+
Frame-shit	ENST00000398512	ENST00000318560		ChiTaRS3.1			DQ912588	BCR	chr22	23524427	+	ABL1	chr9	133747512	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			DQ912588	BCR	chr22	23524427	+	ABL1	chr9	133747512	+
intron-3UTR	ENST00000332408	ENST00000405486		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000332408	ENST00000356244		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000332408	ENST00000455915		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-intron	ENST00000332408	ENST00000407260		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000396535	ENST00000405486		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000396535	ENST00000356244		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000396535	ENST00000455915		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-intron	ENST00000396535	ENST00000407260		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000537958	ENST00000405486		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000537958	ENST00000356244		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3UTR	ENST00000537958	ENST00000455915		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-intron	ENST00000537958	ENST00000407260		ChiTaRS3.1			BE925437	SHC4	chr15	49170450	+	RANGAP1	chr22	41641876	-
intron-3CDS	ENST00000409792	ENST00000402363		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000409792	ENST00000537798		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000409792	ENST00000350030		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000409792	ENST00000372052		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000409792	ENST00000351223		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-intron	ENST00000409792	ENST00000530073		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000492397	ENST00000402363		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000492397	ENST00000537798		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000492397	ENST00000350030		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000492397	ENST00000372052		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-3CDS	ENST00000492397	ENST00000351223		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-intron	ENST00000492397	ENST00000530073		ChiTaRS3.1			DA232535	SETD2	chr3	47098667	-	NASP	chr1	46056907	+
intron-intron	ENST00000316881	ENST00000316881		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000316881	ENST00000573108		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000316881	ENST00000537230		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000573108	ENST00000316881		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000573108	ENST00000573108		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000573108	ENST00000537230		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000537230	ENST00000316881		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000537230	ENST00000573108		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000537230	ENST00000537230		ChiTaRS3.1			BF379232	TRIM25	chr17	54970945	+	TRIM25	chr17	54971097	-
intron-intron	ENST00000552828	ENST00000552828		ChiTaRS3.1			AI056664	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-intron	ENST00000552828	ENST00000378026		ChiTaRS3.1			AI056664	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-intron	ENST00000378026	ENST00000552828		ChiTaRS3.1			AI056664	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-intron	ENST00000378026	ENST00000378026		ChiTaRS3.1			AI056664	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-3CDS	ENST00000529631	ENST00000246533		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529631	ENST00000589146		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529631	ENST00000587718		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529631	ENST00000590874		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529631	ENST00000588815		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529631	ENST00000588780		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-3CDS	ENST00000529191	ENST00000246533		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529191	ENST00000589146		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529191	ENST00000587718		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529191	ENST00000590874		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529191	ENST00000588815		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000529191	ENST00000588780		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-3CDS	ENST00000273550	ENST00000246533		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000273550	ENST00000589146		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000273550	ENST00000587718		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000273550	ENST00000590874		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000273550	ENST00000588815		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000273550	ENST00000588780		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-3CDS	ENST00000526640	ENST00000246533		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000526640	ENST00000589146		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000526640	ENST00000587718		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000526640	ENST00000590874		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000526640	ENST00000588815		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000526640	ENST00000588780		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-3CDS	ENST00000532601	ENST00000246533		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000532601	ENST00000589146		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000532601	ENST00000587718		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000532601	ENST00000590874		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000532601	ENST00000588815		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000532601	ENST00000588780		ChiTaRS3.1			CF128359	FTH1	chr11	61734947	-	CAPNS1	chr19	36632030	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BQ331574	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-3UTR	ENST00000333055	ENST00000333055		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000333055	ENST00000307826		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000333055	ENST00000446023		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000333055	ENST00000393340		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000333055	ENST00000427865		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000333055	ENST00000506708		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000307826	ENST00000333055		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000307826	ENST00000307826		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000307826	ENST00000446023		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000307826	ENST00000393340		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000307826	ENST00000427865		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000307826	ENST00000506708		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000446023	ENST00000333055		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000446023	ENST00000307826		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000446023	ENST00000446023		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000446023	ENST00000393340		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000446023	ENST00000427865		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000446023	ENST00000506708		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000393340	ENST00000333055		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000393340	ENST00000307826		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000393340	ENST00000446023		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000393340	ENST00000393340		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000393340	ENST00000427865		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000393340	ENST00000506708		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000427865	ENST00000333055		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000427865	ENST00000307826		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000427865	ENST00000446023		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000427865	ENST00000393340		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000427865	ENST00000427865		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000427865	ENST00000506708		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000506708	ENST00000333055		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000506708	ENST00000307826		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000506708	ENST00000446023		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-3UTR	ENST00000506708	ENST00000393340		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000506708	ENST00000427865		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
intron-intron	ENST00000506708	ENST00000506708		ChiTaRS3.1			AA730426	MGAT1	chr5	180217737	-	MGAT1	chr5	180217811	+
5UTR-3CDS	ENST00000585509	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000585509	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000585509	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000585509	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-intron	ENST00000585509	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000589297	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000589297	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000589297	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-3CDS	ENST00000589297	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5UTR-intron	ENST00000589297	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000591455	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000591455	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000591455	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000591455	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5CDS-intron	ENST00000591455	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000446868	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000446868	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000446868	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000446868	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5CDS-intron	ENST00000446868	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000361101	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000361101	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000361101	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000361101	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5CDS-intron	ENST00000361101	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000589296	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000589296	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000589296	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
Frame-shit	ENST00000589296	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
5CDS-intron	ENST00000589296	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
intron-3CDS	ENST00000586175	ENST00000393240		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
intron-3CDS	ENST00000586175	ENST00000261205		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
intron-3CDS	ENST00000586175	ENST00000457153		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
intron-3CDS	ENST00000586175	ENST00000552744		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
intron-intron	ENST00000586175	ENST00000549454		ChiTaRS3.1			DA094310	CYTH1	chr17	76704278	-	SYT1	chr12	79679677	+
intron-3CDS	ENST00000336861	ENST00000336861		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000336861	ENST00000246635		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000336861	ENST00000587544		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-intron	ENST00000336861	ENST00000587118		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000246635	ENST00000336861		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000246635	ENST00000246635		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000246635	ENST00000587544		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-intron	ENST00000246635	ENST00000587118		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000587544	ENST00000336861		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000587544	ENST00000246635		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000587544	ENST00000587544		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-intron	ENST00000587544	ENST00000587118		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000587118	ENST00000336861		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000587118	ENST00000246635		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-3CDS	ENST00000587118	ENST00000587544		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
intron-intron	ENST00000587118	ENST00000587118		ChiTaRS3.1			CV318384	KRT13	chr17	39659624	+	KRT13	chr17	39659571	-
3UTR-3UTR	ENST00000430297	ENST00000369754		ChiTaRS3.1			BF848412	FAM134A	chr2	220048201	+	FAM46A	chr6	82459059	-
3UTR-3UTR	ENST00000430297	ENST00000320172		ChiTaRS3.1			BF848412	FAM134A	chr2	220048201	+	FAM46A	chr6	82459059	-
3UTR-3UTR	ENST00000430297	ENST00000369756		ChiTaRS3.1			BF848412	FAM134A	chr2	220048201	+	FAM46A	chr6	82459059	-
intron-3CDS	ENST00000404767	ENST00000301187		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000404767	ENST00000416963		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000404767	ENST00000376591		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-intron	ENST00000404767	ENST00000476013		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000389470	ENST00000301187		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000389470	ENST00000416963		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000389470	ENST00000376591		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-intron	ENST00000389470	ENST00000476013		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000493531	ENST00000301187		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000493531	ENST00000416963		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-3CDS	ENST00000493531	ENST00000376591		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
intron-intron	ENST00000493531	ENST00000476013		ChiTaRS3.1			BF765954	INTS1	chr7	1510594	+	TMC4	chr19	54666506	-
3UTR-intron	ENST00000228468	ENST00000293971		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-3UTR	ENST00000228468	ENST00000302956		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-3UTR	ENST00000228468	ENST00000413459		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-3UTR	ENST00000228468	ENST00000565570		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-intron	ENST00000447966	ENST00000293971		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-3UTR	ENST00000447966	ENST00000302956		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-3UTR	ENST00000447966	ENST00000413459		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
3UTR-3UTR	ENST00000447966	ENST00000565570		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
intron-intron	ENST00000552438	ENST00000293971		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
intron-3UTR	ENST00000552438	ENST00000302956		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
intron-3UTR	ENST00000552438	ENST00000413459		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
intron-3UTR	ENST00000552438	ENST00000565570		ChiTaRS3.1			AI564000	ASIC1	chr12	50477187	-	AMDHD2	chr16	2580662	-
intron-intron	ENST00000380393	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000380393	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000380393	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000380393	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000380393	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000380393	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000380393	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000216877	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000358719	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000399903	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000425918	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000318266	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000380393		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000216877		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000358719		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000399903		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000425918		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000318266		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-intron	ENST00000356147	ENST00000356147		ChiTaRS3.1			BE933359	PTPRA	chr20	2944915	-	PTPRA	chr20	2945848	-
intron-3CDS	ENST00000370328	ENST00000307142		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000370328	ENST00000448416		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000370328	ENST00000429713		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000370328	ENST00000434046		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-3CDS	ENST00000370325	ENST00000307142		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000370325	ENST00000448416		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000370325	ENST00000429713		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000370325	ENST00000434046		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-3CDS	ENST00000393914	ENST00000307142		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000393914	ENST00000448416		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000393914	ENST00000429713		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000393914	ENST00000434046		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-3CDS	ENST00000483564	ENST00000307142		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000483564	ENST00000448416		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000483564	ENST00000429713		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000483564	ENST00000434046		ChiTaRS3.1			BF827216	GABRE	chrX	151123454	-	SYNPO2	chr4	119951199	+
intron-intron	ENST00000346798	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000346798	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000346798	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000346798	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000346798	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000346798	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000346798	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000346798	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000346798	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000346798	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000354192	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000354192	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000354192	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000354192	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000348990	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000348990	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000348990	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000348990	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000357903	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000357903	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000357903	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000357903	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000358918	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000358918	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000358918	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000358918	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000359726	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000359726	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000359726	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000359726	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000448388	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000448388	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000448388	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000448388	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000440126	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000440126	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000440126	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000440126	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000439274	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000439274	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000439274	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000439274	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000346798		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000354192		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000348990		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000474136	ENST00000357903		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000474136	ENST00000358918		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-5UTR	ENST00000474136	ENST00000359726		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000448388		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000440126		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000439274		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
intron-intron	ENST00000474136	ENST00000474136		ChiTaRS3.1			M35675	APP	chr21	27277358	+	APP	chr21	27543088	-
5CDS-intron	ENST00000394671	ENST00000300527		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000394671	ENST00000310645		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000394671	ENST00000357838		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000394671	ENST00000409416		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000394671	ENST00000397763		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-intron	ENST00000394671	ENST00000460886		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-intron	ENST00000511410	ENST00000300527		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000511410	ENST00000310645		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000511410	ENST00000357838		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000511410	ENST00000409416		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000511410	ENST00000397763		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-intron	ENST00000511410	ENST00000460886		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5UTR-intron	ENST00000537378	ENST00000300527		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5UTR-3UTR	ENST00000537378	ENST00000310645		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5UTR-3UTR	ENST00000537378	ENST00000357838		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5UTR-3UTR	ENST00000537378	ENST00000409416		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5UTR-3UTR	ENST00000537378	ENST00000397763		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5UTR-intron	ENST00000537378	ENST00000460886		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-intron	ENST00000252100	ENST00000300527		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000252100	ENST00000310645		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000252100	ENST00000357838		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000252100	ENST00000409416		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-3UTR	ENST00000252100	ENST00000397763		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
5CDS-intron	ENST00000252100	ENST00000460886		ChiTaRS3.1			DB094583	TMCO6	chr5	140021365	+	COL6A2	chr21	47549109	+
3UTR-3UTR	ENST00000303400	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000303400	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000303400	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000303400	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000303400	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000303400	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000303400	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000303400	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505177	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505177	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505177	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505177	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505177	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505177	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505177	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505177	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000264750	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000264750	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000264750	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000264750	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000264750	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000264750	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000264750	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000264750	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000452175	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000452175	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000452175	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000452175	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000452175	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000452175	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000452175	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000452175	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000514708	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000514708	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000514708	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000514708	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000514708	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000514708	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000514708	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000514708	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000510794	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000510794	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000510794	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000510794	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000510794	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000510794	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000510794	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000510794	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505839	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505839	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505839	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505839	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505839	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505839	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-intron	ENST00000505839	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3UTR	ENST00000505839	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000512289	ENST00000303400		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000512289	ENST00000505177		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000512289	ENST00000264750		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000512289	ENST00000452175		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000512289	ENST00000514708		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000512289	ENST00000510794		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-intron	ENST00000512289	ENST00000505839		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
3UTR-3UTR	ENST00000512289	ENST00000512289		ChiTaRS3.1			CN428118	MAEA	chr4	1333703	-	MAEA	chr4	1333796	+
intron-3CDS	ENST00000342160	ENST00000367033		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-5UTR	ENST00000342160	ENST00000483048		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-3CDS	ENST00000262854	ENST00000367033		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-5UTR	ENST00000262854	ENST00000483048		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-3CDS	ENST00000474288	ENST00000367033		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-5UTR	ENST00000474288	ENST00000483048		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-3CDS	ENST00000218328	ENST00000367033		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
intron-5UTR	ENST00000218328	ENST00000483048		ChiTaRS3.1			BI050349	HUWE1	chrX	53591614	-	PLXNA2	chr1	208202391	+
3UTR-intron	ENST00000233143	ENST00000233143		ChiTaRS3.1			AA662033	TMSB10	chr2	85133736	+	TMSB10	chr2	85133795	-
intron-3CDS	ENST00000310441	ENST00000404338		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-intron	ENST00000310441	ENST00000598548		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-3CDS	ENST00000369984	ENST00000404338		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-intron	ENST00000369984	ENST00000598548		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-3CDS	ENST00000354233	ENST00000404338		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-intron	ENST00000354233	ENST00000598548		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-3CDS	ENST00000461098	ENST00000404338		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-intron	ENST00000461098	ENST00000598548		ChiTaRS3.1			BF814972	HCFC1	chrX	153225260	-	ARHGAP35	chr19	47503784	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835131	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000390381	ENST00000377142		ChiTaRS3.1			BI962557	TRBV5-1	chr7	142460874	-	NKX2-2	chr20	21492607	+
In-frame	ENST00000348697	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000348697	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000348697	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000348697	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000348697	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000348697	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
5CDS-intron	ENST00000348697	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000402984	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000402984	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000402984	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000402984	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000402984	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000402984	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
5CDS-intron	ENST00000402984	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000262722	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000262722	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000262722	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000262722	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000262722	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000262722	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
5CDS-intron	ENST00000262722	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000327858	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000327858	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000327858	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000327858	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000327858	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000327858	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
5CDS-intron	ENST00000327858	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000442170	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000442170	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000442170	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000442170	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000442170	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000442170	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
5CDS-intron	ENST00000442170	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000340923	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000340923	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000340923	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000340923	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000340923	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
In-frame	ENST00000340923	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
5CDS-intron	ENST00000340923	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000476366	ENST00000348697		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000476366	ENST00000402984		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000476366	ENST00000262722		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000476366	ENST00000327858		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000476366	ENST00000442170		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000476366	ENST00000340923		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-intron	ENST00000476366	ENST00000476366		ChiTaRS3.1			BG827383	FBLN1	chr22	45931100	-	FBLN1	chr22	45931135	+
intron-3CDS	ENST00000389462	ENST00000216181		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
intron-intron	ENST00000389462	ENST00000475726		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
intron-intron	ENST00000389462	ENST00000401701		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
3UTR-3CDS	ENST00000309083	ENST00000216181		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
3UTR-intron	ENST00000309083	ENST00000475726		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
3UTR-intron	ENST00000309083	ENST00000401701		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
3UTR-3CDS	ENST00000538057	ENST00000216181		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
3UTR-intron	ENST00000538057	ENST00000475726		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
3UTR-intron	ENST00000538057	ENST00000401701		ChiTaRS3.1			AA586758	PTMS	chr12	6879971	-	MYH9	chr22	36691078	+
intron-intron	ENST00000360761	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000360761	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000360761	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000360761	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000354983	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000354983	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000354983	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000354983	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000352832	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000352832	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000352832	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000352832	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000442258	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000442258	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000442258	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000442258	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000416767	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000416767	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000416767	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000416767	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000502264	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000502264	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000502264	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000502264	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000515411	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000515411	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000515411	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000515411	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000510115	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000510115	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000510115	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000510115	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000503485	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000503485	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000503485	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000503485	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000515165	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000515165	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000515165	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000515165	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507510	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507510	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507510	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507510	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000514181	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000514181	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000514181	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000514181	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000515765	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000515765	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000515765	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000515765	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507336	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507336	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507336	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507336	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000514079	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000514079	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000514079	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000514079	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507896	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507896	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507896	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507896	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000512389	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000512389	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000512389	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000512389	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000513689	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000513689	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000513689	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000513689	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000513964	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000513964	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000513964	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000513964	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000505165	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000505165	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000505165	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000505165	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507609	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000507609	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507609	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000507609	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000514717	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000514717	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000514717	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000514717	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000510366	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000510366	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000510366	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000510366	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000429973	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000429973	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000429973	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000429973	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000359106	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000359106	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000359106	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000359106	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000358244	ENST00000429964		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-intron	ENST00000358244	ENST00000506784		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000358244	ENST00000360066		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
intron-3UTR	ENST00000358244	ENST00000509056		ChiTaRS3.1			BF928811	CACNA1G	chr17	48703210	+	CDK18	chr1	205500934	-
5CDS-intron	ENST00000376929	ENST00000494753		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000376929	ENST00000411567		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000376929	ENST00000276914		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000376929	ENST00000380465		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000376929	ENST00000380464		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
intron-intron	ENST00000506690	ENST00000494753		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
intron-intron	ENST00000506690	ENST00000411567		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
intron-intron	ENST00000506690	ENST00000276914		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
intron-intron	ENST00000506690	ENST00000380465		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
intron-intron	ENST00000506690	ENST00000380464		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000389805	ENST00000494753		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000389805	ENST00000411567		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000389805	ENST00000276914		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000389805	ENST00000380465		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000389805	ENST00000380464		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000402874	ENST00000494753		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000402874	ENST00000411567		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000402874	ENST00000276914		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000402874	ENST00000380465		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000402874	ENST00000380464		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000510187	ENST00000494753		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000510187	ENST00000411567		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000510187	ENST00000276914		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000510187	ENST00000380465		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000510187	ENST00000380464		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000360718	ENST00000494753		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000360718	ENST00000411567		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000360718	ENST00000276914		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000360718	ENST00000380465		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
5CDS-intron	ENST00000360718	ENST00000380464		ChiTaRS3.1			BG314910	SQSTM1	chr5	179260220	+	PLIN2	chr9	19121071	+
intron-3CDS	ENST00000360319	ENST00000360319		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000360319	ENST00000422373		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000360319	ENST00000369850		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000360319	ENST00000369856		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000360319	ENST00000344736		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000360319	ENST00000498491		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000422373	ENST00000360319		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000422373	ENST00000422373		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000422373	ENST00000369850		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000422373	ENST00000369856		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000422373	ENST00000344736		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000422373	ENST00000498491		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000369850	ENST00000360319		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000369850	ENST00000422373		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000369850	ENST00000369850		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000369850	ENST00000369856		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000369850	ENST00000344736		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000369850	ENST00000498491		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000369856	ENST00000369856		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000369856	ENST00000344736		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000369856	ENST00000498491		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000344736	ENST00000360319		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000344736	ENST00000422373		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000344736	ENST00000369850		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000344736	ENST00000369856		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000344736	ENST00000344736		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000344736	ENST00000498491		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000498491	ENST00000369856		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000498491	ENST00000344736		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
intron-intron	ENST00000498491	ENST00000498491		ChiTaRS3.1			BQ327077	FLNA	chrX	153592456	-	FLNA	chrX	153593261	+
3UTR-3UTR	ENST00000348261	ENST00000348261		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3UTR	ENST00000348261	ENST00000358590		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-intron	ENST00000348261	ENST00000565831		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3UTR	ENST00000358590	ENST00000348261		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3UTR	ENST00000358590	ENST00000358590		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-intron	ENST00000358590	ENST00000565831		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-3UTR	ENST00000565831	ENST00000348261		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-3UTR	ENST00000565831	ENST00000358590		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
intron-intron	ENST00000565831	ENST00000565831		ChiTaRS3.1			AW881528	CACNA1H	chr16	1271372	-	CACNA1H	chr16	1271296	+
3UTR-3CDS	ENST00000375442	ENST00000372429		ChiTaRS3.1			N91854	TSPYL2	chrX	53117610	-	USP20	chr9	132627648	-
3UTR-3CDS	ENST00000375442	ENST00000315480		ChiTaRS3.1			N91854	TSPYL2	chrX	53117610	-	USP20	chr9	132627648	-
3UTR-3CDS	ENST00000375442	ENST00000358355		ChiTaRS3.1			N91854	TSPYL2	chrX	53117610	-	USP20	chr9	132627648	-
3UTR-intron	ENST00000375442	ENST00000472108		ChiTaRS3.1			N91854	TSPYL2	chrX	53117610	-	USP20	chr9	132627648	-
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-3UTR	ENST00000534358	ENST00000495130		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-3UTR	ENST00000389506	ENST00000495130		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000354520	ENST00000446906		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000354520	ENST00000377072		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000354520	ENST00000307729		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
In-frame	ENST00000354520	ENST00000377059		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-3UTR	ENST00000354520	ENST00000495130		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
5CDS-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-3UTR	ENST00000420751	ENST00000495130		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
3UTR-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AY187923	KMT2A	chr11	118355029	+	MLLT10	chr10	21875216	+
intron-3CDS	ENST00000534307	ENST00000271526		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3CDS	ENST00000534307	ENST00000353233		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3UTR	ENST00000534307	ENST00000491853		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000528302	ENST00000271526		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000528302	ENST00000353233		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
5CDS-3UTR	ENST00000528302	ENST00000491853		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000322535	ENST00000271526		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
In-frame	ENST00000322535	ENST00000353233		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
5CDS-3UTR	ENST00000322535	ENST00000491853		ChiTaRS3.1			BE089937	SF3B2	chr11	65827015	-	PRCC	chr1	156756858	-
intron-3CDS	ENST00000389811	ENST00000390237		ChiTaRS3.1			BF870067	ACOXL	chr2	111558367	+	IGKC	chr2	89157059	-
intron-3CDS	ENST00000439055	ENST00000390237		ChiTaRS3.1			BF870067	ACOXL	chr2	111558367	+	IGKC	chr2	89157059	-
intron-3CDS	ENST00000340561	ENST00000390237		ChiTaRS3.1			BF870067	ACOXL	chr2	111558367	+	IGKC	chr2	89157059	-
intron-3CDS	ENST00000496981	ENST00000390237		ChiTaRS3.1			BF870067	ACOXL	chr2	111558367	+	IGKC	chr2	89157059	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835107	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
In-frame	ENST00000338450	ENST00000338450		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000338450	ENST00000333219		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
In-frame	ENST00000338450	ENST00000375775		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000338450	ENST00000375774		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
5CDS-intron	ENST00000338450	ENST00000464141		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000333219	ENST00000338450		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000333219	ENST00000333219		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000333219	ENST00000375775		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000333219	ENST00000375774		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
5CDS-intron	ENST00000333219	ENST00000464141		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
In-frame	ENST00000375775	ENST00000338450		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000375775	ENST00000333219		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
In-frame	ENST00000375775	ENST00000375775		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000375775	ENST00000375774		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
5CDS-intron	ENST00000375775	ENST00000464141		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000375774	ENST00000338450		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000375774	ENST00000333219		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000375774	ENST00000375775		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
Frame-shit	ENST00000375774	ENST00000375774		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
5CDS-intron	ENST00000375774	ENST00000464141		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
intron-3CDS	ENST00000464141	ENST00000338450		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
intron-3CDS	ENST00000464141	ENST00000333219		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
intron-3CDS	ENST00000464141	ENST00000375775		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
intron-3CDS	ENST00000464141	ENST00000375774		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
intron-intron	ENST00000464141	ENST00000464141		ChiTaRS3.1			BQ306241	ING1	chr13	111372146	+	ING1	chr13	111372089	-
intron-3CDS	ENST00000193403	ENST00000193403		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000193403	ENST00000394419		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000193403	ENST00000438964		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000193403	ENST00000376839		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000193403	ENST00000538545		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000193403	ENST00000554508		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000394419	ENST00000193403		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000394419	ENST00000394419		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000394419	ENST00000438964		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000394419	ENST00000376839		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000394419	ENST00000538545		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000394419	ENST00000554508		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000438964	ENST00000193403		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000438964	ENST00000394419		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000438964	ENST00000438964		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000438964	ENST00000376839		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000438964	ENST00000538545		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000438964	ENST00000554508		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000376839	ENST00000193403		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000376839	ENST00000394419		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000376839	ENST00000438964		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000376839	ENST00000376839		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000376839	ENST00000538545		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000376839	ENST00000554508		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000538545	ENST00000193403		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000538545	ENST00000394419		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000538545	ENST00000438964		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000538545	ENST00000376839		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000538545	ENST00000538545		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000538545	ENST00000554508		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000554508	ENST00000193403		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000554508	ENST00000394419		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000554508	ENST00000438964		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000554508	ENST00000376839		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-3CDS	ENST00000554508	ENST00000538545		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000554508	ENST00000554508		ChiTaRS3.1			BE762312	ACTN1	chr14	69341632	+	ACTN1	chr14	69341691	-
intron-intron	ENST00000589876	ENST00000262395		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000589876	ENST00000444415		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000589876	ENST00000262396		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000245925	ENST00000262395		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000245925	ENST00000444415		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000245925	ENST00000262396		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000536630	ENST00000262395		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000536630	ENST00000444415		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000536630	ENST00000262396		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000587152	ENST00000262395		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000587152	ENST00000444415		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000587152	ENST00000262396		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000586902	ENST00000262395		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000586902	ENST00000444415		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000586902	ENST00000262396		ChiTaRS3.1			BF852696	EML2	chr19	46124480	-	TRAF4	chr17	27072206	+
intron-intron	ENST00000343455	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000343455	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000343455	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000343455	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000367385		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000538004		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000367383		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000417895		ChiTaRS3.1			AA248769	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-3CDS	ENST00000263650	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000263650	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000263650	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000263650	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000263650	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000263650	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000263650	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000389989	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000389989	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000389989	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000389989	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000389989	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000389989	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000389989	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000525498	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000525498	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000525498	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000525498	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000525498	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000525498	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000525498	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000542243	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000542243	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000542243	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000542243	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000542243	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000542243	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000542243	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000348039	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000348039	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000348039	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000348039	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000348039	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000348039	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000348039	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000478260	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000478260	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000478260	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000478260	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000478260	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000478260	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000478260	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000528124	ENST00000263650		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000528124	ENST00000389989		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000528124	ENST00000525498		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000528124	ENST00000542243		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000528124	ENST00000348039		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-3CDS	ENST00000528124	ENST00000478260		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000528124	ENST00000528124		ChiTaRS3.1			CB049070	OSBPL5	chr11	3114111	-	OSBPL5	chr11	3115049	-
intron-intron	ENST00000430710	ENST00000430710		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000430710	ENST00000399982		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000430710	ENST00000557364		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000430710	ENST00000555962		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000399982	ENST00000430710		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000399982	ENST00000399982		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000399982	ENST00000557364		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000399982	ENST00000555962		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000557364	ENST00000430710		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000557364	ENST00000399982		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000557364	ENST00000557364		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000557364	ENST00000555962		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000555962	ENST00000430710		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000555962	ENST00000399982		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000555962	ENST00000557364		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000555962	ENST00000555962		ChiTaRS3.1			BF083325	CHD8	chr14	21868193	+	CHD8	chr14	21862439	+
intron-intron	ENST00000452313	ENST00000452313		ChiTaRS3.1			AW593152	NPIPB7	chr16	28834521	-	NPIPB7	chr16	28846928	-
intron-3CDS	ENST00000252242	ENST00000252242		ChiTaRS3.1			CV372501	KRT5	chr12	52912850	+	KRT5	chr12	52913610	-
Frame-shit	ENST00000300289	ENST00000261772		ChiTaRS3.1			BF818281	PDIA3	chr15	44057718	+	AARS	chr16	70301595	-
5CDS-intron	ENST00000300289	ENST00000564359		ChiTaRS3.1			BF818281	PDIA3	chr15	44057718	+	AARS	chr16	70301595	-
intron-3CDS	ENST00000469684	ENST00000261772		ChiTaRS3.1			BF818281	PDIA3	chr15	44057718	+	AARS	chr16	70301595	-
intron-intron	ENST00000469684	ENST00000564359		ChiTaRS3.1			BF818281	PDIA3	chr15	44057718	+	AARS	chr16	70301595	-
Frame-shit	ENST00000538521	ENST00000261772		ChiTaRS3.1			BF818281	PDIA3	chr15	44057718	+	AARS	chr16	70301595	-
5CDS-intron	ENST00000538521	ENST00000564359		ChiTaRS3.1			BF818281	PDIA3	chr15	44057718	+	AARS	chr16	70301595	-
intron-3CDS	ENST00000526757	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000526757	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000534127	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000534127	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000313726	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000313726	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000357665	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000357665	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000530438	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000530438	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000530991	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000530991	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000526099	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000526099	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000534278	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000534278	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000531237	ENST00000340124		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
intron-3CDS	ENST00000531237	ENST00000440783		ChiTaRS3.1			BF772696	ST5	chr11	8737284	-	GPT2	chr16	46958329	-
5CDS-3UTR	ENST00000407327	ENST00000211998		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-3UTR	ENST00000407327	ENST00000372755		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000407327	ENST00000478896		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000407327	ENST00000417648		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-3UTR	ENST00000335757	ENST00000211998		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-3UTR	ENST00000335757	ENST00000372755		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000335757	ENST00000478896		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000335757	ENST00000417648		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-3UTR	ENST00000586078	ENST00000211998		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-3UTR	ENST00000586078	ENST00000372755		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000586078	ENST00000478896		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000586078	ENST00000417648		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
3UTR-3UTR	ENST00000588214	ENST00000211998		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
3UTR-3UTR	ENST00000588214	ENST00000372755		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
3UTR-intron	ENST00000588214	ENST00000478896		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
3UTR-intron	ENST00000588214	ENST00000417648		ChiTaRS3.1			BE068966	SLC44A2	chr19	10748738	+	VCL	chr10	75878594	-
5CDS-intron	ENST00000445403	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000445403	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000373578	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000373578	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000360723	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000360723	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000358208	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000358208	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000373567	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000373567	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000373558	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
5CDS-intron	ENST00000373558	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
intron-intron	ENST00000477066	ENST00000355897		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
intron-intron	ENST00000477066	ENST00000482813		ChiTaRS3.1			AA523427	SRC	chr20	36022607	+	GPR160	chr3	169792361	-
In-frame	ENST00000376566	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000376566	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000376566	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000376566	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376566	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376566	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376566	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376566	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000376563	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000376563	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000376563	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000376563	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376563	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376563	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376563	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000376563	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-3CDS	ENST00000376548	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-3CDS	ENST00000376548	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-intron	ENST00000376548	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-intron	ENST00000376548	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-3UTR	ENST00000376548	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-3UTR	ENST00000376548	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-3UTR	ENST00000376548	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
intron-3UTR	ENST00000376548	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000447146	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000447146	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000447146	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000447146	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000447146	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000447146	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000447146	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000447146	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-3CDS	ENST00000473764	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-3CDS	ENST00000473764	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-intron	ENST00000473764	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-intron	ENST00000473764	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-3UTR	ENST00000473764	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-3UTR	ENST00000473764	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-3UTR	ENST00000473764	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
3UTR-3UTR	ENST00000473764	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000247140	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000247140	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000247140	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000247140	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000247140	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000247140	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000247140	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000247140	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000218224	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000218224	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000218224	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000218224	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000218224	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000218224	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000218224	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000218224	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000396763	ENST00000376566		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
In-frame	ENST00000396763	ENST00000376563		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000396763	ENST00000376548		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-intron	ENST00000396763	ENST00000447146		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000396763	ENST00000473764		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000396763	ENST00000247140		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000396763	ENST00000218224		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000396763	ENST00000396763		ChiTaRS3.1			BE159568	PQBP1	chrX	48760254	-	PQBP1	chrX	48760014	+
5CDS-3UTR	ENST00000589721	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589721	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589721	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589721	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000589721	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589327	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589327	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589327	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000589327	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000589327	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588606	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588606	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588606	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588606	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000588606	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586005	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586005	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586005	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586005	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000586005	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000591870	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000591870	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000591870	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000591870	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000591870	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588500	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588500	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588500	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000588500	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000588500	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586440	ENST00000254584		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586440	ENST00000396777		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586440	ENST00000445086		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-3UTR	ENST00000586440	ENST00000423813		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
5CDS-intron	ENST00000586440	ENST00000525235		ChiTaRS3.1			AW799757	SMIM22	chr16	4845806	-	ARFIP2	chr11	6498227	+
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			BQ338442	INS-IGF2	chr11	2150702	+	INS-IGF2	chr11	2150943	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			BQ338442	INS-IGF2	chr11	2150702	+	INS-IGF2	chr11	2150943	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			BQ338442	INS-IGF2	chr11	2150702	+	INS-IGF2	chr11	2150943	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			BQ338442	INS-IGF2	chr11	2150702	+	INS-IGF2	chr11	2150943	-
intron-3CDS	ENST00000421699	ENST00000269373		ChiTaRS3.1			BI028997	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000421699	ENST00000535965		ChiTaRS3.1			BI028997	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000609374	ENST00000269373		ChiTaRS3.1			BI028997	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000609374	ENST00000535965		ChiTaRS3.1			BI028997	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000490628	ENST00000269373		ChiTaRS3.1			BI028997	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000490628	ENST00000535965		ChiTaRS3.1			BI028997	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
Frame-shit	ENST00000254108	ENST00000262198		ChiTaRS3.1			CN361911	FUS	chr16	31193986	+	ADNP2	chr18	77894318	+
Frame-shit	ENST00000380244	ENST00000262198		ChiTaRS3.1			CN361911	FUS	chr16	31193986	+	ADNP2	chr18	77894318	+
Frame-shit	ENST00000568685	ENST00000262198		ChiTaRS3.1			CN361911	FUS	chr16	31193986	+	ADNP2	chr18	77894318	+
intron-3CDS	ENST00000474990	ENST00000262198		ChiTaRS3.1			CN361911	FUS	chr16	31193986	+	ADNP2	chr18	77894318	+
intron-3CDS	ENST00000345807	ENST00000360003		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000345807	ENST00000369077		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-5UTR	ENST00000345807	ENST00000466047		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000310418	ENST00000360003		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000310418	ENST00000369077		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-5UTR	ENST00000310418	ENST00000466047		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000509319	ENST00000360003		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000509319	ENST00000369077		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-5UTR	ENST00000509319	ENST00000466047		ChiTaRS3.1			AA724174	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-intron	ENST00000343348	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372391		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372388		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000459739		ChiTaRS3.1			BF990530	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000393721	ENST00000393721		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000370028		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000350060		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000370016		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000537206		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000467421		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000393721		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000370028		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000350060		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000370016		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000537206		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000467421		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000393721		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000370028		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000350060		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000370016		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000537206		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000467421		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000393721		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000370028		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000350060		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000370016		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000537206		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000467421		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000393721		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000370028		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000350060		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000370016		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000537206		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000467421		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000393721		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000370028		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000350060		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000370016		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000537206		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000467421		ChiTaRS3.1			EL583796	ARHGAP4	chrX	153191338	+	ARHGAP4	chrX	153191215	-
intron-3CDS	ENST00000593711	ENST00000300835		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000593711	ENST00000542965		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000593711	ENST00000571654		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000221722	ENST00000300835		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000221722	ENST00000542965		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000221722	ENST00000571654		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000391708	ENST00000300835		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000391708	ENST00000542965		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000391708	ENST00000571654		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000601070	ENST00000300835		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000601070	ENST00000542965		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000601070	ENST00000571654		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000599935	ENST00000300835		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000599935	ENST00000542965		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000599935	ENST00000571654		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000593931	ENST00000300835		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3CDS	ENST00000593931	ENST00000542965		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-intron	ENST00000593931	ENST00000571654		ChiTaRS3.1			DB480741	ZIM2	chr19	57352004	-	PRR14	chr16	30663125	+
intron-3UTR	ENST00000450536	ENST00000216044		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000450536	ENST00000460605		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000367663	ENST00000216044		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000367663	ENST00000460605		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000409812	ENST00000216044		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000409812	ENST00000460605		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000258062	ENST00000216044		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000258062	ENST00000460605		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000415951	ENST00000216044		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000415951	ENST00000460605		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000531675	ENST00000216044		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000531675	ENST00000460605		ChiTaRS3.1			BQ324283	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000357037	ENST00000357037		ChiTaRS3.1			BE925585	PTRF	chr17	40556396	+	PTRF	chr17	40555434	-
intron-intron	ENST00000530124	ENST00000530124		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000530124	ENST00000257247		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000530124	ENST00000525875		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000530124	ENST00000378024		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000257247	ENST00000530124		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000257247	ENST00000257247		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000257247	ENST00000525875		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000257247	ENST00000378024		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000525875	ENST00000530124		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000525875	ENST00000257247		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000525875	ENST00000525875		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000525875	ENST00000378024		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000378024	ENST00000530124		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000378024	ENST00000257247		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000378024	ENST00000525875		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000378024	ENST00000378024		ChiTaRS3.1			BF925652	AHNAK	chr11	62214299	+	AHNAK	chr11	62214068	+
intron-intron	ENST00000397542	ENST00000329138		ChiTaRS3.1			BE825240	CDHR5	chr11	618965	+	HGS	chr17	79660611	-
intron-intron	ENST00000358353	ENST00000329138		ChiTaRS3.1			BE825240	CDHR5	chr11	618965	+	HGS	chr17	79660611	-
intron-intron	ENST00000349570	ENST00000329138		ChiTaRS3.1			BE825240	CDHR5	chr11	618965	+	HGS	chr17	79660611	-
intron-intron	ENST00000529337	ENST00000329138		ChiTaRS3.1			BE825240	CDHR5	chr11	618965	+	HGS	chr17	79660611	-
Frame-shit	ENST00000313654	ENST00000313654		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000313654	ENST00000399516		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000313654	ENST00000269217		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000313654	ENST00000587184		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
5CDS-3UTR	ENST00000313654	ENST00000588770		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000399516	ENST00000313654		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000399516	ENST00000399516		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000399516	ENST00000269217		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000399516	ENST00000587184		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
5CDS-3UTR	ENST00000399516	ENST00000588770		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000269217	ENST00000313654		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000269217	ENST00000399516		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000269217	ENST00000269217		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000269217	ENST00000587184		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
5CDS-3UTR	ENST00000269217	ENST00000588770		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000587184	ENST00000313654		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000587184	ENST00000399516		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000587184	ENST00000269217		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
Frame-shit	ENST00000587184	ENST00000587184		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
5CDS-3UTR	ENST00000587184	ENST00000588770		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
3UTR-3CDS	ENST00000588770	ENST00000313654		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
3UTR-3CDS	ENST00000588770	ENST00000399516		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
3UTR-3CDS	ENST00000588770	ENST00000269217		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
3UTR-3CDS	ENST00000588770	ENST00000587184		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
3UTR-3UTR	ENST00000588770	ENST00000588770		ChiTaRS3.1			AA143453	LAMA3	chr18	21519204	-	LAMA3	chr18	21519266	+
intron-3CDS	ENST00000261207	ENST00000261207		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000261207	ENST00000450142		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000261207	ENST00000437004		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000261207	ENST00000546369		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000261207	ENST00000550107		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000450142	ENST00000261207		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000450142	ENST00000450142		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000450142	ENST00000437004		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000450142	ENST00000546369		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000450142	ENST00000550107		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000437004	ENST00000261207		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000437004	ENST00000450142		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000437004	ENST00000437004		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000437004	ENST00000546369		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000437004	ENST00000550107		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000546369	ENST00000261207		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000546369	ENST00000450142		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000546369	ENST00000437004		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000546369	ENST00000546369		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000546369	ENST00000550107		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000550107	ENST00000261207		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000550107	ENST00000450142		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000550107	ENST00000437004		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000550107	ENST00000546369		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
intron-3CDS	ENST00000550107	ENST00000550107		ChiTaRS3.1			AA715976	PPP1R12A	chr12	80180160	-	PPP1R12A	chr12	80169740	+
5CDS-5UTR	ENST00000374464	ENST00000272928		ChiTaRS3.1			DA381927	CSGALNACT2	chr10	43654362	+	ACKR3	chr2	237478468	+
5CDS-5UTR	ENST00000374466	ENST00000272928		ChiTaRS3.1			DA381927	CSGALNACT2	chr10	43654362	+	ACKR3	chr2	237478468	+
intron-3UTR	ENST00000572173	ENST00000261497		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000572173	ENST00000537526		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-intron	ENST00000572173	ENST00000455117		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000572992	ENST00000261497		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000572992	ENST00000537526		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-intron	ENST00000572992	ENST00000455117		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000381820	ENST00000261497		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000381820	ENST00000537526		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-intron	ENST00000381820	ENST00000455117		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000312499	ENST00000261497		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000312499	ENST00000537526		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-intron	ENST00000312499	ENST00000455117		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000576027	ENST00000261497		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000576027	ENST00000537526		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-intron	ENST00000576027	ENST00000455117		ChiTaRS3.1			AI082273	RMI2	chr16	11369571	+	USP22	chr17	20904046	+
intron-3UTR	ENST00000419277	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000419277	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000428995	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000428995	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000463066	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000463066	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000443117	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000443117	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000551196	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000551196	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000480521	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000480521	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000415247	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000415247	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000484255	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000484255	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000454805	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000454805	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000549300	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000549300	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000475500	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000475500	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000374808	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000374808	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000552158	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000552158	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000488565	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000488565	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000383224	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000383224	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000551933	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000551933	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000474244	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000474244	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000422504	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000422504	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000550806	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000550806	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000494775	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000494775	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000515317	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000515317	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
5CDS-3UTR	ENST00000550456	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
5CDS-3UTR	ENST00000550456	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000502285	ENST00000544632		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
intron-3UTR	ENST00000502285	ENST00000342665		ChiTaRS3.1			BP394074	HLA-DPA1	chr6	4513298	-	SOX12	chr20	308768	+
3UTR-3CDS	ENST00000435765	ENST00000435765		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000435765	ENST00000292644		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000435765	ENST00000544811		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000292644	ENST00000435765		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000292644	ENST00000292644		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000292644	ENST00000544811		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000544811	ENST00000435765		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000544811	ENST00000292644		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
3UTR-3CDS	ENST00000544811	ENST00000544811		ChiTaRS3.1			BM983260	PSMC2	chr7	103008545	-	PSMC2	chr7	103008158	+
intron-3UTR	ENST00000237247	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000237247	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000237247	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000237247	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000237247	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3UTR	ENST00000371039	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371039	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371039	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371039	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371039	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3UTR	ENST00000371035	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371035	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371035	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371035	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371035	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3UTR	ENST00000468286	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000468286	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000468286	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000468286	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000468286	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3UTR	ENST00000371036	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371036	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371036	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371036	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371036	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3UTR	ENST00000371037	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371037	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371037	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371037	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000371037	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3UTR	ENST00000435165	ENST00000370345		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000435165	ENST00000494350		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000435165	ENST00000451524		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000435165	ENST00000535773		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-intron	ENST00000435165	ENST00000370329		ChiTaRS3.1			BP420715	SGIP1	chr1	67120290	-	SEC31B	chr10	102246550	-
intron-3CDS	ENST00000262812	ENST00000204679		ChiTaRS3.1			AI800313	COPE	chr19	19010482	+	GNPTG	chr16	1413040	-
intron-3CDS	ENST00000349893	ENST00000204679		ChiTaRS3.1			AI800313	COPE	chr19	19010482	+	GNPTG	chr16	1413040	-
intron-3CDS	ENST00000600932	ENST00000204679		ChiTaRS3.1			AI800313	COPE	chr19	19010482	+	GNPTG	chr16	1413040	-
intron-3CDS	ENST00000598969	ENST00000204679		ChiTaRS3.1			AI800313	COPE	chr19	19010482	+	GNPTG	chr16	1413040	-
intron-3CDS	ENST00000351079	ENST00000204679		ChiTaRS3.1			AI800313	COPE	chr19	19010482	+	GNPTG	chr16	1413040	-
Frame-shit	ENST00000367302	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367302	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367302	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367302	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367302	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367302	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367302	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367296	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367296	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367296	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367296	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367296	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367296	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367296	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000295624	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000295624	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000295624	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000295624	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000295624	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000295624	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000295624	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367297	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367297	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367297	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367297	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367297	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367297	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367297	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367300	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367300	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367300	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367300	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
Frame-shit	ENST00000367300	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367300	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
5CDS-intron	ENST00000367300	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000367295	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000367295	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000367295	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000367295	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000367295	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-intron	ENST00000367295	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-intron	ENST00000367295	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000469130	ENST00000367302		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000469130	ENST00000367296		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000469130	ENST00000295624		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000469130	ENST00000367297		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000469130	ENST00000367300		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-intron	ENST00000469130	ENST00000367295		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-intron	ENST00000469130	ENST00000469130		ChiTaRS3.1			BF842513	NAV1	chr1	201687883	+	NAV1	chr1	201681938	+
intron-3CDS	ENST00000546244	ENST00000546244		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000546244	ENST00000343810		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000546244	ENST00000550165		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000546244	ENST00000547182		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000546244	ENST00000357123		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000343810	ENST00000546244		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000343810	ENST00000343810		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000343810	ENST00000550165		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000343810	ENST00000547182		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000343810	ENST00000357123		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000550165	ENST00000546244		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000550165	ENST00000343810		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000550165	ENST00000550165		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000550165	ENST00000547182		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000550165	ENST00000357123		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000547182	ENST00000546244		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000547182	ENST00000343810		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000547182	ENST00000550165		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000547182	ENST00000547182		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000547182	ENST00000357123		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000357123	ENST00000546244		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000357123	ENST00000343810		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-3CDS	ENST00000357123	ENST00000550165		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000357123	ENST00000547182		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
intron-5UTR	ENST00000357123	ENST00000357123		ChiTaRS3.1			AW878083	MCRS1	chr12	49952446	-	MCRS1	chr12	49952502	+
In-frame	ENST00000261168	ENST00000261168		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000261168	ENST00000543189		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000261168	ENST00000536444		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000261168	ENST00000544627		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000261168	ENST00000541654		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000261168	ENST00000540793		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000261168		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000543189		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000536444		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000544627		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000543189	ENST00000541654		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000543189	ENST00000540793		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000261168		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000543189		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000536444		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000544627		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000536444	ENST00000541654		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000536444	ENST00000540793		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000261168		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000543189		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000536444		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000544627		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000544627	ENST00000541654		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000544627	ENST00000540793		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000261168		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000543189		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000536444		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000544627		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3UTR	ENST00000541654	ENST00000541654		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3UTR	ENST00000541654	ENST00000540793		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000261168		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000543189		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000536444		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000544627		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000540793	ENST00000541654		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000540793	ENST00000540793		ChiTaRS3.1			BI035269	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000347300	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000347300	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5CDS-intron	ENST00000347300	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000296266	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5CDS-intron	ENST00000296266	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000507564	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5CDS-intron	ENST00000507564	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000431818	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-intron	ENST00000431818	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000504021	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5CDS-intron	ENST00000504021	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000349441	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5CDS-intron	ENST00000349441	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
In-frame	ENST00000348417	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5CDS-intron	ENST00000348417	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-3CDS	ENST00000440957	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
5UTR-intron	ENST00000440957	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000347300		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000296266		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000507564		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000431818		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000504021		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000349441		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000348417		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-3CDS	ENST00000513932	ENST00000440957		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-intron	ENST00000513932	ENST00000513932		ChiTaRS3.1			AW083781	IFT122	chr3	129183496	+	IFT122	chr3	129188218	-
intron-intron	ENST00000552828	ENST00000552828		ChiTaRS3.1			AI741356	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-intron	ENST00000552828	ENST00000378026		ChiTaRS3.1			AI741356	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-intron	ENST00000378026	ENST00000552828		ChiTaRS3.1			AI741356	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-intron	ENST00000378026	ENST00000378026		ChiTaRS3.1			AI741356	CKAP4	chr12	106641775	+	CKAP4	chr12	106641551	+
intron-3CDS	ENST00000397063	ENST00000397063		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000397063	ENST00000397062		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000397063	ENST00000446151		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000397063	ENST00000464747		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3UTR	ENST00000397063	ENST00000423513		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000397062	ENST00000397063		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000397062	ENST00000397062		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000397062	ENST00000446151		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000397062	ENST00000464747		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3UTR	ENST00000397062	ENST00000423513		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000446151	ENST00000397063		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000446151	ENST00000397062		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000446151	ENST00000446151		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000446151	ENST00000464747		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3UTR	ENST00000446151	ENST00000423513		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000464747	ENST00000397063		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000464747	ENST00000397062		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000464747	ENST00000446151		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000464747	ENST00000464747		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3UTR	ENST00000464747	ENST00000423513		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000423513	ENST00000397063		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3CDS	ENST00000423513	ENST00000397062		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000423513	ENST00000446151		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-intron	ENST00000423513	ENST00000464747		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
intron-3UTR	ENST00000423513	ENST00000423513		ChiTaRS3.1			BE005425	NFE2L2	chr2	178095825	-	NFE2L2	chr2	178097300	-
5UTR-3CDS	ENST00000372861	ENST00000372861		ChiTaRS3.1			AI968607	KCNK15	chr20	43374488	-	KCNK15	chr20	43374747	+
5CDS-intron	ENST00000331569	ENST00000408915		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000402589		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000339686		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000436012		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000414866		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000480502		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000467637		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000429837		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000419602		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000462126		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000443640		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000472252		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000492341		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000602781		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000474928		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000488892		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000461300		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000447113		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000392206		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000440396		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000458071		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000418261		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000424570		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
5CDS-intron	ENST00000331569	ENST00000451297		ChiTaRS3.1			BG993061	ZNF703	chr8	37554897	+	DMKN	chr19	36003644	+
intron-intron	ENST00000268802	ENST00000606098		ChiTaRS3.1			AW376214	NOB1	chr16	69776461	-	OXNAD1	chr3	16358253	+
intron-intron	ENST00000268802	ENST00000285083		ChiTaRS3.1			AW376214	NOB1	chr16	69776461	-	OXNAD1	chr3	16358253	+
intron-intron	ENST00000268802	ENST00000605932		ChiTaRS3.1			AW376214	NOB1	chr16	69776461	-	OXNAD1	chr3	16358253	+
intron-intron	ENST00000268802	ENST00000435829		ChiTaRS3.1			AW376214	NOB1	chr16	69776461	-	OXNAD1	chr3	16358253	+
intron-intron	ENST00000268802	ENST00000544043		ChiTaRS3.1			AW376214	NOB1	chr16	69776461	-	OXNAD1	chr3	16358253	+
intron-intron	ENST00000268802	ENST00000607329		ChiTaRS3.1			AW376214	NOB1	chr16	69776461	-	OXNAD1	chr3	16358253	+
5CDS-intron	ENST00000601440	ENST00000327435		ChiTaRS3.1			AA351447	ZNF626	chr19	20844250	-	ADI1	chr2	3518634	-
5CDS-intron	ENST00000601440	ENST00000382093		ChiTaRS3.1			AA351447	ZNF626	chr19	20844250	-	ADI1	chr2	3518634	-
5CDS-intron	ENST00000291750	ENST00000327435		ChiTaRS3.1			AA351447	ZNF626	chr19	20844250	-	ADI1	chr2	3518634	-
5CDS-intron	ENST00000291750	ENST00000382093		ChiTaRS3.1			AA351447	ZNF626	chr19	20844250	-	ADI1	chr2	3518634	-
In-frame	ENST00000262319	ENST00000262319		ChiTaRS3.1			BF844011	TELO2	chr16	1552664	+	TELO2	chr16	1552738	-
5CDS-3UTR	ENST00000262319	ENST00000564507		ChiTaRS3.1			BF844011	TELO2	chr16	1552664	+	TELO2	chr16	1552738	-
3UTR-3CDS	ENST00000564507	ENST00000262319		ChiTaRS3.1			BF844011	TELO2	chr16	1552664	+	TELO2	chr16	1552738	-
3UTR-3UTR	ENST00000564507	ENST00000564507		ChiTaRS3.1			BF844011	TELO2	chr16	1552664	+	TELO2	chr16	1552738	-
intron-intron	ENST00000380393	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000380393	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000380393	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000380393	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000216877	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000216877	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000216877	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000216877	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000358719	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000358719	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000358719	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000358719	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000399903	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000399903	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000399903	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000399903	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000425918	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000425918	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000425918	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000425918	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000318266	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000318266	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000318266	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000318266	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000356147	ENST00000492698		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000356147	ENST00000252999		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000356147	ENST00000370692		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
intron-intron	ENST00000356147	ENST00000370677		ChiTaRS3.1			BQ694937	PTPRA	chr20	2989570	-	LAMA5	chr20	60885247	-
In-frame	ENST00000534358	ENST00000397130		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000534358	ENST00000323443		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000534358	ENST00000563454		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000389506	ENST00000397130		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000389506	ENST00000323443		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000389506	ENST00000563454		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000354520	ENST00000397130		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000354520	ENST00000323443		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
In-frame	ENST00000354520	ENST00000563454		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
3UTR-3CDS	ENST00000420751	ENST00000397130		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
3UTR-3CDS	ENST00000420751	ENST00000323443		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
3UTR-3CDS	ENST00000420751	ENST00000563454		ChiTaRS3.1			AF272377	KMT2A	chr11	118352809	+	LRRC57	chr15	42839469	-
intron-3CDS	ENST00000371754	ENST00000340482		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000371754	ENST00000225275		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-5UTR	ENST00000371754	ENST00000578493		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000469991	ENST00000340482		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000469991	ENST00000225275		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-5UTR	ENST00000469991	ENST00000578493		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000371752	ENST00000340482		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000371752	ENST00000225275		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-5UTR	ENST00000371752	ENST00000578493		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000396105	ENST00000340482		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-3CDS	ENST00000396105	ENST00000225275		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-5UTR	ENST00000396105	ENST00000578493		ChiTaRS3.1			BQ335856	ZNFX1	chr20	47887830	-	MPO	chr17	56355396	-
intron-intron	ENST00000584767	ENST00000584767		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
intron-intron	ENST00000584767	ENST00000581589		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
intron-3UTR	ENST00000584767	ENST00000322444		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
intron-intron	ENST00000581589	ENST00000584767		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
intron-intron	ENST00000581589	ENST00000581589		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
intron-3UTR	ENST00000581589	ENST00000322444		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
3UTR-intron	ENST00000322444	ENST00000584767		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
3UTR-intron	ENST00000322444	ENST00000581589		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
3UTR-3UTR	ENST00000322444	ENST00000322444		ChiTaRS3.1			AW995639	KCTD2	chr17	73059939	+	KCTD2	chr17	73059629	-
intron-intron	ENST00000592685	ENST00000264080		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000592685	ENST00000598626		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000592685	ENST00000430424		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000380702	ENST00000264080		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000380702	ENST00000598626		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000380702	ENST00000430424		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000352831	ENST00000264080		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000352831	ENST00000598626		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000352831	ENST00000430424		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000293683	ENST00000264080		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000293683	ENST00000598626		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000293683	ENST00000430424		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000440014	ENST00000264080		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000440014	ENST00000598626		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
intron-intron	ENST00000440014	ENST00000430424		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000344979	ENST00000264080		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000344979	ENST00000598626		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
3UTR-intron	ENST00000344979	ENST00000430424		ChiTaRS3.1			AA428630	PDE4A	chr19	10578350	-	GPR108	chr19	6733130	+
5CDS-intron	ENST00000279873	ENST00000256646		ChiTaRS3.1			DR979590	ARID5B	chr10	63816985	-	NOTCH2	chr1	120470282	-
5CDS-intron	ENST00000279873	ENST00000602566		ChiTaRS3.1			DR979590	ARID5B	chr10	63816985	-	NOTCH2	chr1	120470282	-
5CDS-intron	ENST00000279873	ENST00000493703		ChiTaRS3.1			DR979590	ARID5B	chr10	63816985	-	NOTCH2	chr1	120470282	-
5CDS-intron	ENST00000309334	ENST00000256646		ChiTaRS3.1			DR979590	ARID5B	chr10	63816985	-	NOTCH2	chr1	120470282	-
5CDS-intron	ENST00000309334	ENST00000602566		ChiTaRS3.1			DR979590	ARID5B	chr10	63816985	-	NOTCH2	chr1	120470282	-
5CDS-intron	ENST00000309334	ENST00000493703		ChiTaRS3.1			DR979590	ARID5B	chr10	63816985	-	NOTCH2	chr1	120470282	-
Frame-shit	ENST00000360839	ENST00000360839		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
Frame-shit	ENST00000360839	ENST00000297183		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-intron	ENST00000360839	ENST00000394723		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-intron	ENST00000360839	ENST00000394722		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-intron	ENST00000360839	ENST00000462121		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-5UTR	ENST00000360839	ENST00000544120		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
Frame-shit	ENST00000297183	ENST00000360839		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
Frame-shit	ENST00000297183	ENST00000297183		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-intron	ENST00000297183	ENST00000394723		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-intron	ENST00000297183	ENST00000394722		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-intron	ENST00000297183	ENST00000462121		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
5CDS-5UTR	ENST00000297183	ENST00000544120		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000394723	ENST00000360839		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000394723	ENST00000297183		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000394723	ENST00000394723		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000394723	ENST00000394722		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000394723	ENST00000462121		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-5UTR	ENST00000394723	ENST00000544120		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000394722	ENST00000360839		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000394722	ENST00000297183		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000394722	ENST00000394723		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000394722	ENST00000394722		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000394722	ENST00000462121		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-5UTR	ENST00000394722	ENST00000544120		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000462121	ENST00000360839		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000462121	ENST00000297183		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000462121	ENST00000394723		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000462121	ENST00000394722		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000462121	ENST00000462121		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-5UTR	ENST00000462121	ENST00000544120		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000544120	ENST00000360839		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-3CDS	ENST00000544120	ENST00000297183		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000544120	ENST00000394723		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000544120	ENST00000394722		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-intron	ENST00000544120	ENST00000462121		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
intron-5UTR	ENST00000544120	ENST00000544120		ChiTaRS3.1			CA312335	ANKHD1	chr5	139893012	-	ANKHD1	chr5	139905777	-
In-frame	ENST00000268171	ENST00000268171		ChiTaRS3.1			BF986802	FURIN	chr15	91419768	-	FURIN	chr15	91419119	+
intron-3CDS	ENST00000577031	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000577031	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000577031	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000577031	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000577031	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000577031	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000577031	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000318059	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000318059	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000318059	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000318059	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000318059	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000318059	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000318059	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000573553	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000573553	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000573553	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000573553	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000573553	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000573553	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000573553	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000575848	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000575848	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000575848	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000575848	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000575848	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000575848	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000575848	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000571941	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000571941	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000571941	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000571941	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000571941	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000571941	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000571941	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000576217	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000576217	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000576217	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000576217	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000576217	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000576217	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000576217	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000575942	ENST00000267970		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-3CDS	ENST00000575942	ENST00000346495		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000575942	ENST00000424443		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000575942	ENST00000561277		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000575942	ENST00000559494		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000575942	ENST00000558745		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-5UTR	ENST00000575942	ENST00000558394		ChiTaRS3.1			DA612149	PAM16	chr16	4390965	-	TSPAN3	chr15	77348599	-
intron-intron	ENST00000300853	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000300853	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000300853	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000423698	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000423698	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000423698	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000588738	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000588738	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000588738	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000340192	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000340192	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000340192	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000591636	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000591636	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000591636	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000589165	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000589165	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000589165	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000013807	ENST00000434748		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000013807	ENST00000261673		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
intron-intron	ENST00000013807	ENST00000542061		ChiTaRS3.1			BG983612	ERCC1	chr19	45973952	+	FBRSL1	chr12	133100584	-
3UTR-3CDS	ENST00000233735	ENST00000078429		ChiTaRS3.1			CK818890	REG1A	chr2	79350483	-	GNA11	chr19	3119254	-
3UTR-3UTR	ENST00000233735	ENST00000586180		ChiTaRS3.1			CK818890	REG1A	chr2	79350483	-	GNA11	chr19	3119254	-
intron-3CDS	ENST00000331925	ENST00000341911		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000316528		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000442647		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000367814		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000525369		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000534121		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000533624		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000534044		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000528774		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000531845		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000527615		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000420123		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000341911		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000316528		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000442647		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000367814		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000525369		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000534121		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000533624		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000534044		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000528774		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000531845		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000527615		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000420123		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000341911		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000316528		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000442647		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000367814		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000525369		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000534121		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000533624		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000534044		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000528774		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000531845		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000527615		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000420123		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000341911		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000316528		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000442647		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000367814		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000525369		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000534121		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000533624		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000534044		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000528774		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000531845		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000527615		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000420123		ChiTaRS3.1			BF332617	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
Frame-shit	ENST00000417098	ENST00000417098		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000417098	ENST00000443023		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000417098	ENST00000260926		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000417098	ENST00000428695		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000417098	ENST00000457245		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
5CDS-intron	ENST00000417098	ENST00000484124		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000443023	ENST00000417098		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000443023	ENST00000443023		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000443023	ENST00000260926		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000443023	ENST00000428695		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000443023	ENST00000457245		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
5CDS-intron	ENST00000443023	ENST00000484124		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000260926	ENST00000417098		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000260926	ENST00000443023		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000260926	ENST00000260926		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000260926	ENST00000428695		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000260926	ENST00000457245		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
5CDS-intron	ENST00000260926	ENST00000484124		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000428695	ENST00000417098		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000428695	ENST00000443023		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000428695	ENST00000260926		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000428695	ENST00000428695		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000428695	ENST00000457245		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
5CDS-intron	ENST00000428695	ENST00000484124		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000457245	ENST00000417098		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000457245	ENST00000443023		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000457245	ENST00000260926		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000457245	ENST00000428695		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
Frame-shit	ENST00000457245	ENST00000457245		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
5CDS-intron	ENST00000457245	ENST00000484124		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-3CDS	ENST00000484124	ENST00000417098		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-3CDS	ENST00000484124	ENST00000443023		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-3CDS	ENST00000484124	ENST00000260926		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-3CDS	ENST00000484124	ENST00000428695		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-3CDS	ENST00000484124	ENST00000457245		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-intron	ENST00000484124	ENST00000484124		ChiTaRS3.1			BE700169	SATB2	chr2	200173483	-	SATB2	chr2	200213899	-
intron-3CDS	ENST00000588757	ENST00000556468		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
intron-3CDS	ENST00000588757	ENST00000253107		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
intron-3CDS	ENST00000588757	ENST00000393793		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000420359	ENST00000556468		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000420359	ENST00000253107		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000420359	ENST00000393793		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000449624	ENST00000556468		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000449624	ENST00000253107		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000449624	ENST00000393793		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000421097	ENST00000556468		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000421097	ENST00000253107		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000421097	ENST00000393793		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
intron-3CDS	ENST00000590958	ENST00000556468		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
intron-3CDS	ENST00000590958	ENST00000253107		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
intron-3CDS	ENST00000590958	ENST00000393793		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000393818	ENST00000556468		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000393818	ENST00000253107		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
3UTR-3CDS	ENST00000393818	ENST00000393793		ChiTaRS3.1			AI650663	COASY	chr17	40718187	-	PPAN	chr19	10221276	-
Frame-shit	ENST00000313654	ENST00000313654		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000399516		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000269217		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000587184		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000313654	ENST00000588770		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000313654		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000399516		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000269217		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000587184		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000399516	ENST00000588770		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000313654		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000399516		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000269217		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000587184		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000269217	ENST00000588770		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000313654		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000399516		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000269217		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000587184		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000587184	ENST00000588770		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000313654		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000399516		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000269217		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000587184		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3UTR	ENST00000588770	ENST00000588770		ChiTaRS3.1			AW578494	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3UTR	ENST00000303562	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
3UTR-intron	ENST00000303562	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
3UTR-intron	ENST00000303562	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
3UTR-intron	ENST00000303562	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
3UTR-intron	ENST00000303562	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
3UTR-intron	ENST00000303562	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
3UTR-intron	ENST00000303562	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-3UTR	ENST00000554617	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000554617	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000554617	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000554617	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000554617	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000554617	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000554617	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-3UTR	ENST00000556324	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000556324	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000556324	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000556324	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000556324	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000556324	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000556324	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-3UTR	ENST00000535987	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000535987	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000535987	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000535987	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000535987	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000535987	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000535987	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-3UTR	ENST00000555242	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555242	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555242	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555242	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555242	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555242	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555242	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-3UTR	ENST00000555686	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555686	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555686	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555686	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555686	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555686	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555686	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-3UTR	ENST00000555347	ENST00000303562		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555347	ENST00000554617		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555347	ENST00000556324		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555347	ENST00000535987		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555347	ENST00000555242		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555347	ENST00000555686		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
intron-intron	ENST00000555347	ENST00000555347		ChiTaRS3.1			BE710328	FOS	chr14	75748643	-	FOS	chr14	75748498	+
Frame-shit	ENST00000401432	ENST00000401432		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000401432	ENST00000403714		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-5UTR	ENST00000401432	ENST00000402191		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-intron	ENST00000401432	ENST00000405108		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000403714	ENST00000401432		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000403714	ENST00000403714		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-5UTR	ENST00000403714	ENST00000402191		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-intron	ENST00000403714	ENST00000405108		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000402191	ENST00000401432		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000402191	ENST00000403714		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-5UTR	ENST00000402191	ENST00000402191		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-intron	ENST00000402191	ENST00000405108		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000405108	ENST00000401432		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
Frame-shit	ENST00000405108	ENST00000403714		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-5UTR	ENST00000405108	ENST00000402191		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
5CDS-intron	ENST00000405108	ENST00000405108		ChiTaRS3.1			M78902	EFR3B	chr2	25367878	+	EFR3B	chr2	25314247	+
intron-3CDS	ENST00000557457	ENST00000557457		ChiTaRS3.1			M61995	AHNAK2	chr14	105404991	-	AHNAK2	chr14	105405033	+
intron-3CDS	ENST00000557457	ENST00000333244		ChiTaRS3.1			M61995	AHNAK2	chr14	105404991	-	AHNAK2	chr14	105405033	+
intron-3CDS	ENST00000333244	ENST00000557457		ChiTaRS3.1			M61995	AHNAK2	chr14	105404991	-	AHNAK2	chr14	105405033	+
intron-3CDS	ENST00000333244	ENST00000333244		ChiTaRS3.1			M61995	AHNAK2	chr14	105404991	-	AHNAK2	chr14	105405033	+
Frame-shit	ENST00000605788	ENST00000296043		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000605788	ENST00000473602		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
Frame-shit	ENST00000405356	ENST00000296043		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000405356	ENST00000473602		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
Frame-shit	ENST00000603742	ENST00000296043		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000603742	ENST00000473602		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
Frame-shit	ENST00000488254	ENST00000296043		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000488254	ENST00000473602		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
3UTR-3CDS	ENST00000477977	ENST00000296043		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
3UTR-intron	ENST00000477977	ENST00000473602		ChiTaRS3.1			AW206361	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
intron-3UTR	ENST00000225964	ENST00000225964		ChiTaRS3.1			AA968534	COL1A1	chr17	48262944	+	COL1A1	chr17	48261972	+
intron-intron	ENST00000372391	ENST00000323963		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372391	ENST00000440191		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372391	ENST00000356531		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372388	ENST00000323963		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372388	ENST00000440191		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372388	ENST00000356531		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000459739	ENST00000323963		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000459739	ENST00000440191		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000459739	ENST00000356531		ChiTaRS3.1			BF990739	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000529631	ENST00000418539		ChiTaRS3.1			DA783643	FTH1	chr11	61734977	-	BCYRN1	chrX	70514287	+
intron-intron	ENST00000529191	ENST00000418539		ChiTaRS3.1			DA783643	FTH1	chr11	61734977	-	BCYRN1	chrX	70514287	+
intron-intron	ENST00000273550	ENST00000418539		ChiTaRS3.1			DA783643	FTH1	chr11	61734977	-	BCYRN1	chrX	70514287	+
intron-intron	ENST00000526640	ENST00000418539		ChiTaRS3.1			DA783643	FTH1	chr11	61734977	-	BCYRN1	chrX	70514287	+
intron-intron	ENST00000532601	ENST00000418539		ChiTaRS3.1			DA783643	FTH1	chr11	61734977	-	BCYRN1	chrX	70514287	+
intron-3UTR	ENST00000337273	ENST00000263805		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000337273	ENST00000565380		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000337273	ENST00000565611		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000337273	ENST00000565660		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000454282	ENST00000263805		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000454282	ENST00000565380		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000454282	ENST00000565611		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000454282	ENST00000565660		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000447967	ENST00000263805		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000447967	ENST00000565380		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000447967	ENST00000565611		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000447967	ENST00000565660		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000523768	ENST00000263805		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000523768	ENST00000565380		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000523768	ENST00000565611		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000523768	ENST00000565660		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000513944	ENST00000263805		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000513944	ENST00000565380		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000513944	ENST00000565611		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000513944	ENST00000565660		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000506351	ENST00000263805		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000506351	ENST00000565380		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000506351	ENST00000565611		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000506351	ENST00000565660		ChiTaRS3.1			BQ338374	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000598205	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000598205	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000598205	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000376970	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000376970	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000376970	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000425460	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000425460	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000425460	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000440075	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000440075	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000440075	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000601313	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000601313	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000601313	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000262269	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000262269	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000262269	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000596571	ENST00000549231		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000596571	ENST00000355673		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-3UTR	ENST00000596571	ENST00000431731		ChiTaRS3.1			AW362416	MYH14	chr19	50808382	-	MBD6	chr12	57923774	-
intron-intron	ENST00000343023	ENST00000341162		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-5UTR	ENST00000343023	ENST00000534938		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-intron	ENST00000343023	ENST00000553615		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-intron	ENST00000354230	ENST00000341162		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-5UTR	ENST00000354230	ENST00000534938		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-intron	ENST00000354230	ENST00000553615		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-intron	ENST00000303887	ENST00000341162		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-5UTR	ENST00000303887	ENST00000534938		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-intron	ENST00000303887	ENST00000553615		ChiTaRS3.1			EC558070	MCM7	chr7	99690459	+	FCF1	chr14	75179909	+
intron-intron	ENST00000393721	ENST00000393721		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000370028		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000350060		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000370016		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000537206		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000393721	ENST00000467421		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000393721		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000370028		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000350060		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000370016		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000537206		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370028	ENST00000467421		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000393721		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000370028		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000350060		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000370016		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000537206		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000350060	ENST00000467421		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000393721		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000370028		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000350060		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000370016		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000537206		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000370016	ENST00000467421		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000393721		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000370028		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000350060		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000370016		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000537206		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000537206	ENST00000467421		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000393721		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000370028		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000350060		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000370016		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000537206		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000467421	ENST00000467421		ChiTaRS3.1			EL583776	ARHGAP4	chrX	153191341	+	ARHGAP4	chrX	153191215	-
intron-intron	ENST00000441210	ENST00000441210		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
intron-intron	ENST00000441210	ENST00000457433		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
intron-intron	ENST00000441210	ENST00000271064		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
intron-3UTR	ENST00000441210	ENST00000537531		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
intron-3UTR	ENST00000441210	ENST00000481165		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-intron	ENST00000457433	ENST00000441210		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-intron	ENST00000457433	ENST00000457433		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-intron	ENST00000457433	ENST00000271064		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-3UTR	ENST00000457433	ENST00000537531		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-3UTR	ENST00000457433	ENST00000481165		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-intron	ENST00000271064	ENST00000441210		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-intron	ENST00000271064	ENST00000457433		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-intron	ENST00000271064	ENST00000271064		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-3UTR	ENST00000271064	ENST00000537531		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
5CDS-3UTR	ENST00000271064	ENST00000481165		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-intron	ENST00000537531	ENST00000441210		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-intron	ENST00000537531	ENST00000457433		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-intron	ENST00000537531	ENST00000271064		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-3UTR	ENST00000537531	ENST00000537531		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-3UTR	ENST00000537531	ENST00000481165		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-intron	ENST00000481165	ENST00000441210		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-intron	ENST00000481165	ENST00000457433		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-intron	ENST00000481165	ENST00000271064		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-3UTR	ENST00000481165	ENST00000537531		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
3UTR-3UTR	ENST00000481165	ENST00000481165		ChiTaRS3.1			BF368733	TINAGL1	chr1	32049159	+	TINAGL1	chr1	32050363	-
intron-3CDS	ENST00000417009	ENST00000216281		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000417009	ENST00000334701		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000417009	ENST00000441629		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000417009	ENST00000558600		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000444799	ENST00000216281		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000444799	ENST00000334701		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000444799	ENST00000441629		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000444799	ENST00000558600		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000413065	ENST00000216281		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000413065	ENST00000334701		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000413065	ENST00000441629		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000413065	ENST00000558600		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000248566	ENST00000216281		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000248566	ENST00000334701		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000248566	ENST00000441629		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000248566	ENST00000558600		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000493858	ENST00000216281		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000493858	ENST00000334701		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000493858	ENST00000441629		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000493858	ENST00000558600		ChiTaRS3.1			DW431867	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000374825	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374825	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000374825	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000496118	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000496118	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000580234	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000580234	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000374831	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000374831	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395289	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000395289	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000443797	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000443797	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000395287	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000395287	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449085	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000449085	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000438194	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000438194	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466744	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000466744	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000383108	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000383108	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547895	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000547895	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549843	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000549843	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442863	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000442863	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000552513	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000552513	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000442219	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000442219	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000498329	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000498329	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000488549	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000488549	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000425201	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000425201	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399529	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000399529	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399528	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000399528	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550142	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000550142	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000548837	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000548837	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000399527	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000399527	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000549236	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000549236	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000482105	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000482105	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000414731	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000414731	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000449118	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000449118	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000550598	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000550598	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000479973	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000479973	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000546777	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000546777	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000450320	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000450320	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000547286	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000547286	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000552587	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-3UTR	ENST00000552587	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000549126	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-3UTR	ENST00000549126	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000553146	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-3UTR	ENST00000553146	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000448067	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-3UTR	ENST00000448067	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-intron	ENST00000436979	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
5CDS-3UTR	ENST00000436979	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000374825		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000496118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000580234		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000374831		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000395289		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000443797		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000395287		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000449085		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000438194		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000466744		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000383108		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000547895		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000549843		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000442863		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000552513		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000442219		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000498329		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000488549		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000425201		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000399529		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000399528		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000550142		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000548837		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000399527		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000549236		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000482105		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000414731		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000449118		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000550598		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000479973		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000546777		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000450320		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000547286		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000552587		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000549126		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000553146		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000448067		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-intron	ENST00000466208	ENST00000436979		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3UTR	ENST00000466208	ENST00000466208		ChiTaRS3.1			BF815013	BRD2	chr6	4426743	-	BRD2	chr6	4425365	+
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF336729	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			BI058184	BOLA2	chr16	29847038	-	BOLA2	chr16	29852948	+
intron-intron	ENST00000359428	ENST00000481781		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000359428	ENST00000397270		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000411637	ENST00000481781		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000411637	ENST00000397270		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000451030	ENST00000481781		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000451030	ENST00000397270		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000483497	ENST00000481781		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000483497	ENST00000397270		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000465486	ENST00000481781		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
intron-intron	ENST00000465486	ENST00000397270		ChiTaRS3.1			BG003896	NUP214	chr9	134070322	-	INS-IGF2	chr11	2154279	+
Frame-shit	ENST00000295408	ENST00000296444		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
Frame-shit	ENST00000295408	ENST00000444115		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
Frame-shit	ENST00000295408	ENST00000426002		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-5UTR	ENST00000295408	ENST00000465449		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-5UTR	ENST00000295408	ENST00000442747		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-5UTR	ENST00000295408	ENST00000443308		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
Frame-shit	ENST00000421804	ENST00000296444		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
Frame-shit	ENST00000421804	ENST00000444115		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
Frame-shit	ENST00000421804	ENST00000426002		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-5UTR	ENST00000421804	ENST00000465449		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-5UTR	ENST00000421804	ENST00000442747		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-5UTR	ENST00000421804	ENST00000443308		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
intron-3CDS	ENST00000409780	ENST00000296444		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
intron-3CDS	ENST00000409780	ENST00000444115		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
intron-3CDS	ENST00000409780	ENST00000426002		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
intron-5UTR	ENST00000409780	ENST00000465449		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
intron-5UTR	ENST00000409780	ENST00000442747		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
intron-5UTR	ENST00000409780	ENST00000443308		ChiTaRS3.1			BE772596	MERTK	chr2	112687011	-	SHISA5	chr3	48510868	+
5CDS-intron	ENST00000332050	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000332050	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000332050	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000397938	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000397938	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000397938	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000406548	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000406548	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000406548	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-intron	ENST00000331029	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-intron	ENST00000331029	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-intron	ENST00000331029	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000414183	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000414183	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000414183	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-intron	ENST00000333395	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-intron	ENST00000333395	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-intron	ENST00000333395	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000332035	ENST00000338488		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000332035	ENST00000395097		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
5CDS-intron	ENST00000332035	ENST00000330847		ChiTaRS3.1			AF524261	EWSR1	chr22	29688159	+	NR4A3	chr9	102589010	+
intron-3CDS	ENST00000271636	ENST00000271636		ChiTaRS3.1			BF880274	CGN	chr1	151492972	+	CGN	chr1	151492722	-
In-frame	ENST00000325321	ENST00000430479		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000399357		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000420159		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000343495		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000242066		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000405192		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000405358		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000403527		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000405218		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000325321	ENST00000403685		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000325321	ENST00000476720		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000430479		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000399357		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000420159		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000343495		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000242066		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000405192		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000405358		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000403527		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000405218		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-3CDS	ENST00000391810	ENST00000403685		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-5UTR	ENST00000391810	ENST00000476720		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000430479		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000399357		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000420159		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000343495		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000242066		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000405192		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000405358		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000403527		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000405218		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
In-frame	ENST00000358049	ENST00000403685		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
5CDS-5UTR	ENST00000358049	ENST00000476720		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000430479		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000399357		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000420159		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000343495		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000242066		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000405192		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000405358		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000403527		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000405218		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-3CDS	ENST00000597509	ENST00000403685		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
3UTR-5UTR	ENST00000597509	ENST00000476720		ChiTaRS3.1			HM245386	KLK2	chr19	51378136	+	ETV1	chr7	13971374	-
intron-intron	ENST00000413366	ENST00000460934		ChiTaRS3.1			BF854872	PRKCA	chr17	64571808	-	SLC45A3	chr1	205633006	+
intron-intron	ENST00000413366	ENST00000367145		ChiTaRS3.1			BF854872	PRKCA	chr17	64571808	-	SLC45A3	chr1	205633006	+
intron-intron	ENST00000583361	ENST00000460934		ChiTaRS3.1			BF854872	PRKCA	chr17	64571808	-	SLC45A3	chr1	205633006	+
intron-intron	ENST00000583361	ENST00000367145		ChiTaRS3.1			BF854872	PRKCA	chr17	64571808	-	SLC45A3	chr1	205633006	+
intron-3UTR	ENST00000393958	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393958	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393958	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393958	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393958	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393960	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393960	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393960	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393960	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393960	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000355677	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000355677	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000355677	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000355677	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000355677	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000524491	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000524491	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000524491	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000524491	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000524491	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000529047	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000529047	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000529047	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000529047	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000529047	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393955	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393955	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393955	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393955	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393955	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000528224	ENST00000417961		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000528224	ENST00000361573		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000528224	ENST00000541138		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000528224	ENST00000539601		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000528224	ENST00000490250		ChiTaRS3.1			AI015900	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3CDS	ENST00000355973	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000355973	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000355973	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000376977	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000376977	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000376977	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000377016	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000377016	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000377016	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000377012	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000377012	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000377012	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000377034	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000377034	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000377034	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000449163	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000449163	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000449163	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000452300	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000452300	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000452300	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000547410	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000547410	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000547410	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000546913	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000546913	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000546913	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000550428	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000550428	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000550428	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000489750	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000489750	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000489750	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000419674	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000419674	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000419674	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000439457	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000439457	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000439457	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000438094	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000438094	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000438094	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000548767	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000548767	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000548767	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000486623	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000486623	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000486623	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000434660	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000434660	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000434660	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000423604	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000423604	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000423604	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000414980	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000414980	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000414980	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000417759	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000417759	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000417759	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000551140	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000551140	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000551140	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000446436	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000446436	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000446436	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000471103	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000471103	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000471103	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000443440	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000443440	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000443440	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000425097	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000425097	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000425097	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383543	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383543	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383543	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000552399	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000552399	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000552399	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383537	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383537	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383537	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000493602	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000493602	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000493602	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383541	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383541	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383541	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383542	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383542	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383542	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383639	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383639	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383639	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000551423	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000551423	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000551423	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383636	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383636	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383636	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000495153	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000495153	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000495153	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383637	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383637	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383637	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000383638	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383638	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000383638	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000448754	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000448754	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000448754	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000550820	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000550820	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000550820	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000458612	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000458612	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000458612	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000464091	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000464091	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000464091	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000440316	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000440316	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000440316	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000418225	ENST00000310473		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000418225	ENST00000536983		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-intron	ENST00000418225	ENST00000542615		ChiTaRS3.1			BF841681	GABBR1	chr6	874150	+	UCP2	chr11	73686648	+
intron-3CDS	ENST00000270459	ENST00000261534		ChiTaRS3.1			BF871714	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000270459	ENST00000556880		ChiTaRS3.1			BF871714	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-3CDS	ENST00000587279	ENST00000261534		ChiTaRS3.1			BF871714	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000587279	ENST00000556880		ChiTaRS3.1			BF871714	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-3CDS	ENST00000401084	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000401084	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000401084	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264203	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264203	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375142	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375142	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000433834	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000433834	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264202	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264202	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000482808	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000482808	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000401084		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000264203		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000375142		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000433834		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000264202		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375144	ENST00000482808		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375144	ENST00000375144		ChiTaRS3.1			BQ370695	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
In-frame	ENST00000157600	ENST00000342287		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000157600	ENST00000373487		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000157600	ENST00000373489		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000157600	ENST00000373483		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000157600	ENST00000447726		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-3UTR	ENST00000157600	ENST00000538998		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000535732	ENST00000342287		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000535732	ENST00000373487		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
In-frame	ENST00000535732	ENST00000373489		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000535732	ENST00000373483		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-5UTR	ENST00000535732	ENST00000447726		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5CDS-3UTR	ENST00000535732	ENST00000538998		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000454244	ENST00000342287		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000454244	ENST00000373487		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000454244	ENST00000373489		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000454244	ENST00000373483		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000454244	ENST00000447726		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3UTR	ENST00000454244	ENST00000538998		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000397386	ENST00000342287		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000397386	ENST00000373487		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3CDS	ENST00000397386	ENST00000373489		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000397386	ENST00000373483		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-5UTR	ENST00000397386	ENST00000447726		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
5UTR-3UTR	ENST00000397386	ENST00000538998		ChiTaRS3.1			DA020867	LMCD1	chr3	8543667	+	PBX3	chr9	128691932	+
3UTR-3UTR	ENST00000534336	ENST00000275364		ChiTaRS3.1			BE063291	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000544127		ChiTaRS3.1			BE063291	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-5UTR	ENST00000534336	ENST00000491117		ChiTaRS3.1			BE063291	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000407904		ChiTaRS3.1			BE063291	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000407653		ChiTaRS3.1			BE063291	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
3UTR-3UTR	ENST00000534336	ENST00000396960		ChiTaRS3.1			BE063291	MALAT1	chr11	65268379	-	GNA12	chr7	2770715	+
5CDS-intron	ENST00000361545	ENST00000216962		ChiTaRS3.1			BF764783	CLIP2	chr7	73790387	-	PYGB	chr20	25267034	-
5CDS-intron	ENST00000361545	ENST00000471359		ChiTaRS3.1			BF764783	CLIP2	chr7	73790387	-	PYGB	chr20	25267034	-
5CDS-intron	ENST00000223398	ENST00000216962		ChiTaRS3.1			BF764783	CLIP2	chr7	73790387	-	PYGB	chr20	25267034	-
5CDS-intron	ENST00000223398	ENST00000471359		ChiTaRS3.1			BF764783	CLIP2	chr7	73790387	-	PYGB	chr20	25267034	-
5CDS-intron	ENST00000395060	ENST00000216962		ChiTaRS3.1			BF764783	CLIP2	chr7	73790387	-	PYGB	chr20	25267034	-
5CDS-intron	ENST00000395060	ENST00000471359		ChiTaRS3.1			BF764783	CLIP2	chr7	73790387	-	PYGB	chr20	25267034	-
5CDS-intron	ENST00000379887	ENST00000371799		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
5CDS-intron	ENST00000379887	ENST00000277415		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
5CDS-intron	ENST00000379887	ENST00000252854		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
5CDS-intron	ENST00000379887	ENST00000371801		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
5CDS-intron	ENST00000379887	ENST00000371796		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
5CDS-intron	ENST00000379887	ENST00000392991		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
5CDS-intron	ENST00000379887	ENST00000371793		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000371799		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000277415		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000252854		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000371801		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000371796		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000392991		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-intron	ENST00000562891	ENST00000371793		ChiTaRS3.1			DA779963	ARIH1	chr15	72847654	+	OLFM1	chr9	137987765	+
intron-3CDS	ENST00000368465	ENST00000285599		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000368465	ENST00000504248		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000368465	ENST00000504960		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000368463	ENST00000285599		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000368463	ENST00000504248		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000368463	ENST00000504960		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000539880	ENST00000285599		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000539880	ENST00000504248		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000539880	ENST00000504960		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000542459	ENST00000285599		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000542459	ENST00000504248		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000542459	ENST00000504960		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000368460	ENST00000285599		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000368460	ENST00000504248		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000368460	ENST00000504960		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000498553	ENST00000285599		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3CDS	ENST00000498553	ENST00000504248		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000498553	ENST00000504960		ChiTaRS3.1			BF922845	PBXIP1	chr1	154918751	-	MAN2B2	chr4	6610905	+
intron-3UTR	ENST00000399788	ENST00000264071		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-3UTR	ENST00000399788	ENST00000540257		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000399788	ENST00000601152		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000399788	ENST00000598006		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000399788	ENST00000596926		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-3UTR	ENST00000540838	ENST00000264071		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-3UTR	ENST00000540838	ENST00000540257		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000540838	ENST00000601152		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000540838	ENST00000598006		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000540838	ENST00000596926		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-3UTR	ENST00000382815	ENST00000264071		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-3UTR	ENST00000382815	ENST00000540257		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000382815	ENST00000601152		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000382815	ENST00000598006		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-intron	ENST00000382815	ENST00000596926		ChiTaRS3.1			CB146214	KDM5A	chr12	402297	+	TUBB4A	chr19	6494899	-
intron-3CDS	ENST00000330978	ENST00000291270		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
intron-3CDS	ENST00000330978	ENST00000600757		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
intron-3CDS	ENST00000330978	ENST00000343373		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
intron-3CDS	ENST00000330978	ENST00000447742		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
intron-3CDS	ENST00000330978	ENST00000458663		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
intron-3CDS	ENST00000330978	ENST00000354227		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
intron-intron	ENST00000330978	ENST00000595361		ChiTaRS3.1			BG992769	BOLA2	chr16	29820907	+	DMPK	chr19	46273901	-
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM756490	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM756490	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM756490	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM756490	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-intron	ENST00000419277	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000419277	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000428995	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000463066	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000443117	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551196	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000480521	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000415247	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000484255	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000454805	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000549300	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000475500	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000374808	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000552158	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000488565	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000383224	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000551933	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000474244	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000422504	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550806	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000494775	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000515317	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000550456	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000418931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000535465		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000471184		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000411749		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000441981		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000474044		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000550949		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000383102		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000441857		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000551599		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000548608		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000492916		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000454006		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000411424		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000548235		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000472101		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000425130		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000411558		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000481615		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000553195		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000399500		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000399491		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000548907		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000469961		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000415996		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000447783		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000548074		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000491972		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000433800		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000444931		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000552574		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000502285	ENST00000461155		ChiTaRS3.1			AW366700	HLA-DPA1	chr6	4389591	+	HLA-DPB1	chr6	4534143	-
intron-intron	ENST00000469972	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000469972	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000469972	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000469972	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000469972	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000469972	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372047	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372047	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372047	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372047	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372047	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372047	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372050	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372050	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372050	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372050	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372050	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372050	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393160	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393160	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393160	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393160	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393160	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393160	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393157	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393157	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393157	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393157	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393157	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000393157	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000542690	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000542690	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000542690	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000542690	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000542690	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000542690	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372062	ENST00000468306		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372062	ENST00000370401		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372062	ENST00000432680		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372062	ENST00000262858		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372062	ENST00000426613		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-intron	ENST00000372062	ENST00000455522		ChiTaRS3.1			DA107579	RALGDS	chr9	135976437	-	MAMLD1	chrX	149638806	+
intron-3CDS	ENST00000378300	ENST00000441003		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000378300	ENST00000359061		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000378300	ENST00000361558		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000378300	ENST00000333592		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-3CDS	ENST00000378292	ENST00000441003		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000378292	ENST00000359061		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000378292	ENST00000361558		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000378292	ENST00000333592		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-3CDS	ENST00000329305	ENST00000441003		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000329305	ENST00000359061		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000329305	ENST00000361558		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000329305	ENST00000333592		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-3CDS	ENST00000360958	ENST00000441003		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000360958	ENST00000359061		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000360958	ENST00000361558		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000360958	ENST00000333592		ChiTaRS3.1			AW842723	TPM2	chr9	35689761	-	MUC2	chr11	1092956	+
intron-intron	ENST00000431794	ENST00000431794		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000431794	ENST00000268852		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000431794	ENST00000586007		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000431794	ENST00000544606		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000431794	ENST00000590081		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000268852	ENST00000431794		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000268852	ENST00000268852		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000268852	ENST00000586007		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000268852	ENST00000544606		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000268852	ENST00000590081		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000586007	ENST00000431794		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000586007	ENST00000268852		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000586007	ENST00000586007		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000586007	ENST00000544606		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000586007	ENST00000590081		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000544606	ENST00000431794		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000544606	ENST00000268852		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000544606	ENST00000586007		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000544606	ENST00000544606		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000544606	ENST00000590081		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000590081	ENST00000431794		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000590081	ENST00000268852		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000590081	ENST00000586007		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-3UTR	ENST00000590081	ENST00000544606		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000590081	ENST00000590081		ChiTaRS3.1			AA034425	MYO19	chr17	34869020	+	MYO19	chr17	34869145	-
intron-intron	ENST00000275230	ENST00000320610		ChiTaRS3.1			AA665574	SLC2A12	chr6	134311343	+	ZNF236	chr18	74625855	-
intron-intron	ENST00000275230	ENST00000253159		ChiTaRS3.1			AA665574	SLC2A12	chr6	134311343	+	ZNF236	chr18	74625855	-
intron-intron	ENST00000275230	ENST00000583095		ChiTaRS3.1			AA665574	SLC2A12	chr6	134311343	+	ZNF236	chr18	74625855	-
5CDS-intron	ENST00000378300	ENST00000392521		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000378300	ENST00000261833		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000378300	ENST00000537607		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000378292	ENST00000392521		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000378292	ENST00000261833		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000378292	ENST00000537607		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000329305	ENST00000392521		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000329305	ENST00000261833		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000329305	ENST00000537607		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000360958	ENST00000392521		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000360958	ENST00000261833		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
5CDS-intron	ENST00000360958	ENST00000537607		ChiTaRS3.1			DA577148	TPM2	chr9	35685644	-	CIT	chr12	120231489	-
intron-intron	ENST00000409592	ENST00000362507		ChiTaRS3.1			BF326144	DOCK10	chr2	225758446	+	RNU5F-1	chr1	220287683	-
intron-intron	ENST00000258390	ENST00000362507		ChiTaRS3.1			BF326144	DOCK10	chr2	225758446	+	RNU5F-1	chr1	220287683	-
intron-intron	ENST00000474102	ENST00000362507		ChiTaRS3.1			BF326144	DOCK10	chr2	225758446	+	RNU5F-1	chr1	220287683	-
intron-3CDS	ENST00000377298	ENST00000377298		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000377298	ENST00000361311		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000377298	ENST00000377288		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-intron	ENST00000377298	ENST00000477264		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000361311	ENST00000377298		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000361311	ENST00000361311		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000361311	ENST00000377288		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-intron	ENST00000361311	ENST00000477264		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000377288	ENST00000377298		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000377288	ENST00000361311		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000377288	ENST00000377288		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-intron	ENST00000377288	ENST00000477264		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000477264	ENST00000377298		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000477264	ENST00000361311		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000477264	ENST00000377288		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-intron	ENST00000477264	ENST00000477264		ChiTaRS3.1			DA224602	CLSTN1	chr1	9804586	-	CLSTN1	chr1	9883723	-
intron-3CDS	ENST00000590923	ENST00000590923		ChiTaRS3.1			BF092383	AP1M2	chr19	10689627	+	AP1M2	chr19	10687960	-
intron-3CDS	ENST00000590923	ENST00000250244		ChiTaRS3.1			BF092383	AP1M2	chr19	10689627	+	AP1M2	chr19	10687960	-
intron-3CDS	ENST00000250244	ENST00000590923		ChiTaRS3.1			BF092383	AP1M2	chr19	10689627	+	AP1M2	chr19	10687960	-
intron-3CDS	ENST00000250244	ENST00000250244		ChiTaRS3.1			BF092383	AP1M2	chr19	10689627	+	AP1M2	chr19	10687960	-
3UTR-3UTR	ENST00000340385	ENST00000340385		ChiTaRS3.1			CA439640	PRDX6	chr1	173457430	+	PRDX6	chr1	173457460	-
3UTR-intron	ENST00000340385	ENST00000470017		ChiTaRS3.1			CA439640	PRDX6	chr1	173457430	+	PRDX6	chr1	173457460	-
intron-3UTR	ENST00000470017	ENST00000340385		ChiTaRS3.1			CA439640	PRDX6	chr1	173457430	+	PRDX6	chr1	173457460	-
intron-intron	ENST00000470017	ENST00000470017		ChiTaRS3.1			CA439640	PRDX6	chr1	173457430	+	PRDX6	chr1	173457460	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835138	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000406606	ENST00000373635		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000406606	ENST00000308696		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000406606	ENST00000409643		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-intron	ENST00000406606	ENST00000488354		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000371850	ENST00000373635		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000371850	ENST00000308696		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000371850	ENST00000409643		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-intron	ENST00000371850	ENST00000488354		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000371851	ENST00000373635		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000371851	ENST00000308696		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000371851	ENST00000409643		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-intron	ENST00000371851	ENST00000488354		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000486113	ENST00000373635		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000486113	ENST00000308696		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000486113	ENST00000409643		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-intron	ENST00000486113	ENST00000488354		ChiTaRS3.1			AI133508	VAV2	chr9	136627594	-	PSMD1	chr2	232010989	+
intron-3CDS	ENST00000524717	ENST00000305557		ChiTaRS3.1			BG983415	MAML2	chr11	96045073	-	RTKN	chr2	74654573	-
intron-3CDS	ENST00000524717	ENST00000272430		ChiTaRS3.1			BG983415	MAML2	chr11	96045073	-	RTKN	chr2	74654573	-
intron-3CDS	ENST00000524717	ENST00000233330		ChiTaRS3.1			BG983415	MAML2	chr11	96045073	-	RTKN	chr2	74654573	-
intron-intron	ENST00000524717	ENST00000484453		ChiTaRS3.1			BG983415	MAML2	chr11	96045073	-	RTKN	chr2	74654573	-
5CDS-5UTR	ENST00000292363	ENST00000397397		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000397411		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-intron	ENST00000292363	ENST00000397396		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000397408		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000397406		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000409543		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-intron	ENST00000292363	ENST00000525201		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000397404		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000346501		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
5CDS-5UTR	ENST00000292363	ENST00000409531		ChiTaRS3.1			CN274960	RNF126	chr19	663047	-	TSPAN4	chr11	850287	+
intron-intron	ENST00000390168	ENST00000492698		ChiTaRS3.1			CN391244	H19	chr11	2018871	-	LAMA5	chr20	60885257	-
intron-intron	ENST00000390168	ENST00000252999		ChiTaRS3.1			CN391244	H19	chr11	2018871	-	LAMA5	chr20	60885257	-
intron-intron	ENST00000390168	ENST00000370692		ChiTaRS3.1			CN391244	H19	chr11	2018871	-	LAMA5	chr20	60885257	-
intron-intron	ENST00000390168	ENST00000370677		ChiTaRS3.1			CN391244	H19	chr11	2018871	-	LAMA5	chr20	60885257	-
Frame-shit	ENST00000377046	ENST00000377046		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000377046	ENST00000352980		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000377046	ENST00000341318		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000377046	ENST00000530446		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000377046	ENST00000534650		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000377046	ENST00000525204		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000377046		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000352980		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000341318		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000530446		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000352980	ENST00000534650		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000352980	ENST00000525204		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000377046		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000352980		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000341318		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000530446		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000341318	ENST00000534650		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000341318	ENST00000525204		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000377046		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000352980		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000341318		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000530446		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000530446	ENST00000534650		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000530446	ENST00000525204		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000377046		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000352980		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000341318		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000530446		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000534650	ENST00000534650		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000534650	ENST00000525204		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000377046		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000352980		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000341318		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000530446		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-5UTR	ENST00000525204	ENST00000534650		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3UTR	ENST00000525204	ENST00000525204		ChiTaRS3.1			CR735169	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000405731	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000405731	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000405731	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000405731	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000405731	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000405731	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000405731	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396713	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396713	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396713	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396713	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396713	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396713	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396713	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396707	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396707	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396707	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396707	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396707	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396707	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396707	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
In-frame	ENST00000335965	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
In-frame	ENST00000335965	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
In-frame	ENST00000335965	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
In-frame	ENST00000335965	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
In-frame	ENST00000335965	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000335965	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000335965	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396709	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396709	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396709	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396709	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396709	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396709	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396709	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-3CDS	ENST00000496017	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-3CDS	ENST00000496017	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-3CDS	ENST00000496017	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-3CDS	ENST00000496017	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-3CDS	ENST00000496017	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-intron	ENST00000496017	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-intron	ENST00000496017	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396706	ENST00000405731		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396706	ENST00000396713		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396706	ENST00000396707		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396706	ENST00000335965		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
Frame-shit	ENST00000396706	ENST00000396709		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396706	ENST00000496017		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
5CDS-intron	ENST00000396706	ENST00000396706		ChiTaRS3.1			AI740665	ZDHHC4	chr7	6628396	-	ZDHHC4	chr7	6624763	+
intron-intron	ENST00000474210	ENST00000295470		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000349655		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000602300		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000502762		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000514511		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000295470		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000349655		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000602300		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000502762		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000514511		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000295470		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000349655		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000602300		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000502762		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000514511		ChiTaRS3.1			AA456091	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
In-frame	ENST00000359315	ENST00000348639		ChiTaRS3.1			BF507699	TPGS1	chr19	507516	-	CHRNA3	chr15	78894021	-
In-frame	ENST00000359315	ENST00000326828		ChiTaRS3.1			BF507699	TPGS1	chr19	507516	-	CHRNA3	chr15	78894021	-
5CDS-intron	ENST00000359315	ENST00000559941		ChiTaRS3.1			BF507699	TPGS1	chr19	507516	-	CHRNA3	chr15	78894021	-
5CDS-intron	ENST00000346329	ENST00000340940		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
5CDS-intron	ENST00000346329	ENST00000393039		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
5CDS-intron	ENST00000301843	ENST00000340940		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
5CDS-intron	ENST00000301843	ENST00000393039		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
intron-intron	ENST00000527622	ENST00000340940		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
intron-intron	ENST00000527622	ENST00000393039		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
5CDS-intron	ENST00000376561	ENST00000340940		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
5CDS-intron	ENST00000376561	ENST00000393039		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
intron-intron	ENST00000538675	ENST00000340940		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
intron-intron	ENST00000538675	ENST00000393039		ChiTaRS3.1			AW367542	CTTN	chr11	70265934	+	KLRG2	chr7	139166808	-
intron-intron	ENST00000307092	ENST00000321725		ChiTaRS3.1			AA285062	NT5DC2	chr3	52558871	+	STAB1	chr3	52558538	-
intron-intron	ENST00000307076	ENST00000321725		ChiTaRS3.1			AA285062	NT5DC2	chr3	52558871	+	STAB1	chr3	52558538	-
intron-intron	ENST00000422318	ENST00000321725		ChiTaRS3.1			AA285062	NT5DC2	chr3	52558871	+	STAB1	chr3	52558538	-
intron-intron	ENST00000459839	ENST00000321725		ChiTaRS3.1			AA285062	NT5DC2	chr3	52558871	+	STAB1	chr3	52558538	-
intron-intron	ENST00000490681	ENST00000321725		ChiTaRS3.1			AA285062	NT5DC2	chr3	52558871	+	STAB1	chr3	52558538	-
5CDS-intron	ENST00000396872	ENST00000530157		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000525451		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000308162		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000527344		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000531407		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000524553		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000534769		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000396872	ENST00000531413		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000530157		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000525451		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000308162		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000527344		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000531407		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000524553		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000534769		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000297195	ENST00000531413		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000530157		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000525451		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000308162		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000527344		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000531407		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000524553		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000534769		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
5CDS-intron	ENST00000406453	ENST00000531413		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000530157		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000525451		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000308162		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000527344		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000531407		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000524553		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000534769		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-intron	ENST00000439491	ENST00000531413		ChiTaRS3.1			BQ876729	SLC29A4	chr7	5327504	+	CFL1	chr11	65623646	-
intron-3UTR	ENST00000367996	ENST00000367996		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000367996	ENST00000478394		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000367996	ENST00000367995		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-3UTR	ENST00000478394	ENST00000367996		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000478394	ENST00000478394		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000478394	ENST00000367995		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-3UTR	ENST00000367995	ENST00000367996		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000367995	ENST00000478394		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000367995	ENST00000367995		ChiTaRS3.1			AW793935	ADAMTS4	chr1	161161084	+	ADAMTS4	chr1	161160753	-
intron-intron	ENST00000537090	ENST00000301284		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
intron-intron	ENST00000537090	ENST00000586684		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
5CDS-intron	ENST00000321264	ENST00000301284		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
5CDS-intron	ENST00000321264	ENST00000586684		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
5CDS-intron	ENST00000403782	ENST00000301284		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
5CDS-intron	ENST00000403782	ENST00000586684		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
intron-intron	ENST00000342518	ENST00000301284		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
intron-intron	ENST00000342518	ENST00000586684		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
3UTR-intron	ENST00000486953	ENST00000301284		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
3UTR-intron	ENST00000486953	ENST00000586684		ChiTaRS3.1			BF920776	D2HGDH	chr2	242695430	+	HDGFRP2	chr19	4500224	+
intron-3CDS	ENST00000373644	ENST00000534358		ChiTaRS3.1			FM165197	TET1	chr10	70433245	+	KMT2A	chr11	118355576	+
intron-3CDS	ENST00000373644	ENST00000389506		ChiTaRS3.1			FM165197	TET1	chr10	70433245	+	KMT2A	chr11	118355576	+
intron-intron	ENST00000373644	ENST00000354520		ChiTaRS3.1			FM165197	TET1	chr10	70433245	+	KMT2A	chr11	118355576	+
intron-intron	ENST00000373644	ENST00000420751		ChiTaRS3.1			FM165197	TET1	chr10	70433245	+	KMT2A	chr11	118355576	+
intron-3UTR	ENST00000591778	ENST00000591778		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-3UTR	ENST00000591778	ENST00000262776		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-intron	ENST00000591778	ENST00000585407		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-3UTR	ENST00000262776	ENST00000591778		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-3UTR	ENST00000262776	ENST00000262776		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-intron	ENST00000262776	ENST00000585407		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-3UTR	ENST00000585407	ENST00000591778		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-3UTR	ENST00000585407	ENST00000262776		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-intron	ENST00000585407	ENST00000585407		ChiTaRS3.1			BI018035	LGALS3BP	chr17	76968106	-	LGALS3BP	chr17	76968062	+
intron-3UTR	ENST00000311713	ENST00000398665		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000311713	ENST00000608122		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-3UTR	ENST00000278856	ENST00000398665		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000278856	ENST00000608122		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-3UTR	ENST00000529106	ENST00000398665		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000529106	ENST00000608122		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-3UTR	ENST00000525239	ENST00000398665		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000525239	ENST00000608122		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-3UTR	ENST00000525752	ENST00000398665		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000525752	ENST00000608122		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-3UTR	ENST00000540620	ENST00000398665		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000540620	ENST00000608122		ChiTaRS3.1			AA554469	WDR74	chr11	62600524	+	DOT1L	chr19	2230330	+
intron-intron	ENST00000437089	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000437089	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000454678	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000453195	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000487829	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456770	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000439094	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425523	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000484938	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438908	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000455000	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000436219	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000475230	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000433314	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000447711	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000456093	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000486529	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000438384	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000432326	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000425831	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000481596	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000463977	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000383607	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000327357	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000396558	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000450392	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000415923	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000428486	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477569	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000422349	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000445259	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000427535	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000437089		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000454678		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000453195		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000487829		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000456770		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000439094		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000425523		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000484938		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000438908		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000455000		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000436219		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000475230		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000433314		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000447711		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000456093		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000486529		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000438384		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000432326		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000425831		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000481596		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000463977		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000383607		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000327357		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000396558		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000450392		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000415923		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000428486		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000477569		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000422349		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000445259		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000427535		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
intron-intron	ENST00000477353	ENST00000477353		ChiTaRS3.1			BF914446	TRIM26	chr6	1501980	-	TRIM26	chr6	1484551	-
5CDS-intron	ENST00000584667	ENST00000584667		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000355423		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000579864		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000584667		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000355423		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000579864		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000584667		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000355423		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000579864		ChiTaRS3.1			BE175393	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
intron-3CDS	ENST00000310806	ENST00000310806		ChiTaRS3.1			AA491377	MIS18BP1	chr14	45693450	-	MIS18BP1	chr14	45700482	-
intron-intron	ENST00000310806	ENST00000492652		ChiTaRS3.1			AA491377	MIS18BP1	chr14	45693450	-	MIS18BP1	chr14	45700482	-
intron-3CDS	ENST00000492652	ENST00000310806		ChiTaRS3.1			AA491377	MIS18BP1	chr14	45693450	-	MIS18BP1	chr14	45700482	-
intron-intron	ENST00000492652	ENST00000492652		ChiTaRS3.1			AA491377	MIS18BP1	chr14	45693450	-	MIS18BP1	chr14	45700482	-
intron-3CDS	ENST00000263997	ENST00000263997		ChiTaRS3.1			CB122687	SLC7A6OS	chr16	68344835	+	SLC7A6OS	chr16	68344716	-
5CDS-3UTR	ENST00000306385	ENST00000272462		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-intron	ENST00000306385	ENST00000427178		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
3UTR-3UTR	ENST00000354870	ENST00000272462		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
3UTR-intron	ENST00000354870	ENST00000427178		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-3UTR	ENST00000397816	ENST00000272462		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-intron	ENST00000397816	ENST00000427178		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-3UTR	ENST00000306349	ENST00000272462		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-intron	ENST00000306349	ENST00000427178		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-3UTR	ENST00000397814	ENST00000272462		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
5CDS-intron	ENST00000397814	ENST00000427178		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
intron-3UTR	ENST00000523849	ENST00000272462		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
intron-intron	ENST00000523849	ENST00000427178		ChiTaRS3.1			BF737796	BMP1	chr8	22037967	-	MALL	chr2	110841958	+
3UTR-3UTR	ENST00000372429	ENST00000372429		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000372429	ENST00000315480		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000372429	ENST00000358355		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000372429	ENST00000472108		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000315480	ENST00000372429		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000315480	ENST00000315480		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000315480	ENST00000358355		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000315480	ENST00000472108		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000358355	ENST00000372429		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000358355	ENST00000315480		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000358355	ENST00000358355		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000358355	ENST00000472108		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000472108	ENST00000372429		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000472108	ENST00000315480		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000472108	ENST00000358355		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
3UTR-3UTR	ENST00000472108	ENST00000472108		ChiTaRS3.1			AA393366	USP20	chr9	132643538	-	USP20	chr9	132643579	+
intron-3CDS	ENST00000355072	ENST00000457408		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-intron	ENST00000355072	ENST00000289577		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-intron	ENST00000355072	ENST00000481238		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-5UTR	ENST00000355072	ENST00000444131		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-3CDS	ENST00000513806	ENST00000457408		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-intron	ENST00000513806	ENST00000289577		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-intron	ENST00000513806	ENST00000481238		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
intron-5UTR	ENST00000513806	ENST00000444131		ChiTaRS3.1			BE766597	HTT	chr4	3231263	-	TMED4	chr7	44620802	+
5CDS-5UTR	ENST00000588240	ENST00000338488		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000588240	ENST00000395097		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000588240	ENST00000330847		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000338488		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000395097		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000592237	ENST00000330847		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000338488		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000395097		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
5CDS-5UTR	ENST00000311979	ENST00000330847		ChiTaRS3.1			AJ245932	TAF15	chr17	34149837	+	NR4A3	chr9	102590321	+
intron-intron	ENST00000311915	ENST00000425217		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000311915	ENST00000339824		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000311915	ENST00000302438		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000311915	ENST00000545002		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000425217		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000339824		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000302438		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000545002		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000425217		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000339824		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000302438		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000545002		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000425217		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000339824		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000302438		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000545002		ChiTaRS3.1			BF962834	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
Frame-shit	ENST00000402363	ENST00000505658		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000402363	ENST00000393227		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000402363	ENST00000311571		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000402363	ENST00000240304		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000402363	ENST00000544170		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000402363	ENST00000503798		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000537798	ENST00000505658		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000537798	ENST00000393227		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000537798	ENST00000311571		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000537798	ENST00000240304		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000537798	ENST00000544170		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000537798	ENST00000503798		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000350030	ENST00000505658		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000350030	ENST00000393227		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000350030	ENST00000311571		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000350030	ENST00000240304		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000350030	ENST00000544170		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000350030	ENST00000503798		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000372052	ENST00000505658		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000372052	ENST00000393227		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000372052	ENST00000311571		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000372052	ENST00000240304		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000372052	ENST00000544170		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000372052	ENST00000503798		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000351223	ENST00000505658		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
Frame-shit	ENST00000351223	ENST00000393227		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000351223	ENST00000311571		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000351223	ENST00000240304		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000351223	ENST00000544170		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
5CDS-intron	ENST00000351223	ENST00000503798		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-3CDS	ENST00000530073	ENST00000505658		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-3CDS	ENST00000530073	ENST00000393227		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-intron	ENST00000530073	ENST00000311571		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-intron	ENST00000530073	ENST00000240304		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-intron	ENST00000530073	ENST00000544170		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-intron	ENST00000530073	ENST00000503798		ChiTaRS3.1			CN266771	NASP	chr1	46072218	+	LUC7L3	chr17	48823182	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835142	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
5CDS-intron	ENST00000379987	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000379987	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000379987	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000379987	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000379987	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000453617	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000453617	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000453617	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000453617	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000453617	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000427316	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000427316	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000427316	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000427316	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000427316	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000514622	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000514622	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000514622	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000514622	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000514622	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000305572	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000305572	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000305572	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000305572	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000305572	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000506666	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000506666	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000506666	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000506666	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
5CDS-intron	ENST00000506666	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
intron-intron	ENST00000513430	ENST00000399640		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
intron-intron	ENST00000513430	ENST00000319914		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
intron-intron	ENST00000513430	ENST00000521180		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
intron-intron	ENST00000513430	ENST00000522652		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
intron-intron	ENST00000513430	ENST00000519435		ChiTaRS3.1			BF329641	NPNT	chr4	106880206	-	ST3GAL1	chr8	134503048	-
intron-intron	ENST00000547776	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547776	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547776	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547776	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547776	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547776	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000329257	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000329257	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000329257	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000329257	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000329257	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000329257	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547010	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547010	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547010	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547010	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547010	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547010	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000341752	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000341752	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000341752	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000341752	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000341752	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000341752	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549558	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549558	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549558	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549558	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549558	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549558	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550693	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550693	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550693	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550693	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550693	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550693	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549025	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549025	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549025	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549025	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549025	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549025	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549493	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549493	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549493	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549493	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549493	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000549493	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547446	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547446	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547446	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547446	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547446	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000547446	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000333732	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000333732	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000333732	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000333732	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000333732	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
5UTR-intron	ENST00000333732	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546568	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546568	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546568	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546568	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546568	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546568	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000332712	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000332712	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000332712	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000332712	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000332712	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000332712	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546960	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546960	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546960	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546960	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546960	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000546960	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550833	ENST00000538618		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550833	ENST00000392979		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550833	ENST00000299222		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550833	ENST00000392977		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550833	ENST00000550015		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000550833	ENST00000551148		ChiTaRS3.1			DA202206	ANKS1B	chr12	99288408	-	ANO4	chr12	101472970	+
intron-intron	ENST00000221561	ENST00000399640		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000221561	ENST00000319914		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000221561	ENST00000521180		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000221561	ENST00000522652		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000221561	ENST00000519435		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000327141	ENST00000399640		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000327141	ENST00000319914		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000327141	ENST00000521180		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000327141	ENST00000522652		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000327141	ENST00000519435		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000592330	ENST00000399640		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000592330	ENST00000319914		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000592330	ENST00000521180		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000592330	ENST00000522652		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000592330	ENST00000519435		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000586839	ENST00000399640		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000586839	ENST00000319914		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000586839	ENST00000521180		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000586839	ENST00000522652		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
intron-intron	ENST00000586839	ENST00000519435		ChiTaRS3.1			BG005080	AES	chr19	3054215	+	ST3GAL1	chr8	134475847	-
In-frame	ENST00000376747	ENST00000376747		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
In-frame	ENST00000376747	ENST00000376714		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
In-frame	ENST00000376747	ENST00000397618		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
5CDS-5UTR	ENST00000376747	ENST00000467305		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
5CDS-5UTR	ENST00000376747	ENST00000376712		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000376714	ENST00000376747		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000376714	ENST00000376714		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000376714	ENST00000397618		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000376714	ENST00000467305		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000376714	ENST00000376712		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000397618	ENST00000376747		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000397618	ENST00000376714		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000397618	ENST00000397618		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000397618	ENST00000467305		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000397618	ENST00000376712		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000467305	ENST00000376747		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000467305	ENST00000376714		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000467305	ENST00000397618		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000467305	ENST00000467305		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000467305	ENST00000376712		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000376712	ENST00000376747		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000376712	ENST00000376714		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000376712	ENST00000397618		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000376712	ENST00000467305		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-5UTR	ENST00000376712	ENST00000376712		ChiTaRS3.1			CA335867	UGGT2	chr13	96622366	-	UGGT2	chr13	96651562	-
intron-3CDS	ENST00000261623	ENST00000261623		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000261623	ENST00000567174		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000261623	ENST00000569359		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-intron	ENST00000261623	ENST00000561972		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000567174	ENST00000261623		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000567174	ENST00000567174		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000567174	ENST00000569359		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-intron	ENST00000567174	ENST00000561972		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000569359	ENST00000261623		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000569359	ENST00000567174		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000569359	ENST00000569359		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-intron	ENST00000569359	ENST00000561972		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000561972	ENST00000261623		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000561972	ENST00000567174		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-3CDS	ENST00000561972	ENST00000569359		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-intron	ENST00000561972	ENST00000561972		ChiTaRS3.1			AW374327	CYBA	chr16	88712577	-	CYBA	chr16	88713562	-
intron-intron	ENST00000545334	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000545334	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000545334	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000537927	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000537927	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000537927	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000318304	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000318304	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000318304	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000535047	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000535047	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000535047	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000542629	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000542629	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000542629	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000228425	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000228425	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000228425	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000541633	ENST00000389048		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000541633	ENST00000431873		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000541633	ENST00000498037		ChiTaRS3.1			AB795401	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-3CDS	ENST00000298992	ENST00000395443		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000298992	ENST00000357496		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000298992	ENST00000424300		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-intron	ENST00000298992	ENST00000479449		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000435224	ENST00000395443		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000435224	ENST00000357496		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000435224	ENST00000424300		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-intron	ENST00000435224	ENST00000479449		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000530814	ENST00000395443		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000530814	ENST00000357496		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-3CDS	ENST00000530814	ENST00000424300		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
intron-intron	ENST00000530814	ENST00000479449		ChiTaRS3.1			AA875968	ABTB2	chr11	34176937	-	QRICH1	chr3	49094655	+
In-frame	ENST00000225964	ENST00000297268		ChiTaRS3.1			BQ369258	COL1A1	chr17	48266737	-	COL1A2	chr7	94056356	+
intron-3CDS	ENST00000245206	ENST00000355072		ChiTaRS3.1			BQ337855	GOT2	chr16	58752121	-	HTT	chr4	3209030	+
intron-intron	ENST00000245206	ENST00000513806		ChiTaRS3.1			BQ337855	GOT2	chr16	58752121	-	HTT	chr4	3209030	+
intron-3CDS	ENST00000434819	ENST00000355072		ChiTaRS3.1			BQ337855	GOT2	chr16	58752121	-	HTT	chr4	3209030	+
intron-intron	ENST00000434819	ENST00000513806		ChiTaRS3.1			BQ337855	GOT2	chr16	58752121	-	HTT	chr4	3209030	+
intron-3CDS	ENST00000564400	ENST00000355072		ChiTaRS3.1			BQ337855	GOT2	chr16	58752121	-	HTT	chr4	3209030	+
intron-intron	ENST00000564400	ENST00000513806		ChiTaRS3.1			BQ337855	GOT2	chr16	58752121	-	HTT	chr4	3209030	+
intron-intron	ENST00000575235	ENST00000575235		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000293829		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000572907		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000575398		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575235	ENST00000575082		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575235		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000293829		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000572907		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575398		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000293829	ENST00000575082		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575235		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000293829		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000572907		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575398		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000572907	ENST00000575082		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575235		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000293829		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000572907		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575398		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575398	ENST00000575082		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575235		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000293829		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000572907		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575398		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
intron-intron	ENST00000575082	ENST00000575082		ChiTaRS3.1			AW293780	FGF11	chr17	7329532	-	FGF11	chr17	7329949	-
5UTR-3CDS	ENST00000361439	ENST00000399410		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000349029		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000351154		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000399408		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000345148		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000346370		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-intron	ENST00000361439	ENST00000576557		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000399410		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000349029		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000351154		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000399408		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000345148		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000346370		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-intron	ENST00000565384	ENST00000576557		ChiTaRS3.1			BE241792	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-intron	ENST00000394773	ENST00000469172		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000394773	ENST00000265866		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000394773	ENST00000441000		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000394773	ENST00000354695		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000278845	ENST00000469172		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000278845	ENST00000265866		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000278845	ENST00000441000		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000278845	ENST00000354695		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000531557	ENST00000469172		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000531557	ENST00000265866		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000531557	ENST00000441000		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000531557	ENST00000354695		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000494176	ENST00000469172		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000494176	ENST00000265866		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000494176	ENST00000441000		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000494176	ENST00000354695		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000529309	ENST00000469172		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000529309	ENST00000265866		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000529309	ENST00000441000		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000529309	ENST00000354695		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000438258	ENST00000469172		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000438258	ENST00000265866		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000438258	ENST00000441000		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
intron-intron	ENST00000438258	ENST00000354695		ChiTaRS3.1			BF902815	EML3	chr11	62376523	+	HNRNPH3	chr10	70101604	-
5CDS-3UTR	ENST00000252456	ENST00000355957		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000252456	ENST00000361770		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000252456	ENST00000359617		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000252456	ENST00000371141		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000252456	ENST00000371132		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-intron	ENST00000252456	ENST00000496003		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000252456	ENST00000358029		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000252456	ENST00000361830		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000355957		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000361770		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000359617		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000371141		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000371132		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-intron	ENST00000592923	ENST00000496003		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000358029		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000592923	ENST00000361830		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000355957		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000361770		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000359617		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000371141		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000371132		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-intron	ENST00000535659	ENST00000496003		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000358029		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000535659	ENST00000361830		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000355957		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000361770		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000359617		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000371141		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000371132		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-intron	ENST00000588468	ENST00000496003		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000358029		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
intron-3UTR	ENST00000588468	ENST00000361830		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000355957		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000361770		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000359617		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000371141		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000371132		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-intron	ENST00000544952	ENST00000496003		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000358029		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5CDS-3UTR	ENST00000544952	ENST00000361830		ChiTaRS3.1			AW376257	CNN1	chr19	11660603	+	STX16	chr20	57253063	+
5UTR-3CDS	ENST00000356577	ENST00000285021		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
5UTR-3CDS	ENST00000356577	ENST00000449060		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
5UTR-3CDS	ENST00000290239	ENST00000285021		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
5UTR-3CDS	ENST00000290239	ENST00000449060		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
5UTR-3CDS	ENST00000381692	ENST00000285021		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
5UTR-3CDS	ENST00000381692	ENST00000449060		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
intron-3CDS	ENST00000300278	ENST00000285021		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
intron-3CDS	ENST00000300278	ENST00000449060		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
intron-3CDS	ENST00000381679	ENST00000285021		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
intron-3CDS	ENST00000381679	ENST00000449060		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
intron-3CDS	ENST00000470533	ENST00000285021		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
intron-3CDS	ENST00000470533	ENST00000449060		ChiTaRS3.1			AV736879	SON	chr21	34915373	-	XPC	chr3	14214540	-
5CDS-intron	ENST00000508628	ENST00000259608		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000508628	ENST00000474403		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000456466	ENST00000259608		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000456466	ENST00000474403		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000582970	ENST00000259608		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000582970	ENST00000474403		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000319921	ENST00000259608		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000319921	ENST00000474403		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000336301	ENST00000259608		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000336301	ENST00000474403		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000427003	ENST00000259608		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000427003	ENST00000474403		ChiTaRS3.1			DB112751	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-3CDS	ENST00000396353	ENST00000371542		ChiTaRS3.1			BE855941	NDE1	chr16	15802691	+	LRRC26	chr9	140063360	+
intron-3CDS	ENST00000396355	ENST00000371542		ChiTaRS3.1			BE855941	NDE1	chr16	15802691	+	LRRC26	chr9	140063360	+
intron-3CDS	ENST00000396354	ENST00000371542		ChiTaRS3.1			BE855941	NDE1	chr16	15802691	+	LRRC26	chr9	140063360	+
intron-3CDS	ENST00000342673	ENST00000371542		ChiTaRS3.1			BE855941	NDE1	chr16	15802691	+	LRRC26	chr9	140063360	+
intron-3CDS	ENST00000571896	ENST00000371542		ChiTaRS3.1			BE855941	NDE1	chr16	15802691	+	LRRC26	chr9	140063360	+
5UTR-5UTR	ENST00000394156	ENST00000332776		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000394156	ENST00000574788		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000394156	ENST00000304328		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000394156	ENST00000250066		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-intron	ENST00000394156	ENST00000572429		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000268603	ENST00000332776		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000268603	ENST00000574788		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000268603	ENST00000304328		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000268603	ENST00000250066		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-intron	ENST00000268603	ENST00000572429		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000566827	ENST00000332776		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000566827	ENST00000574788		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000566827	ENST00000304328		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000566827	ENST00000250066		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
5UTR-intron	ENST00000566827	ENST00000572429		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000569624	ENST00000332776		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000569624	ENST00000574788		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000569624	ENST00000304328		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000569624	ENST00000250066		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
intron-intron	ENST00000569624	ENST00000572429		ChiTaRS3.1			AY380225	CDH11	chr16	65155782	-	USP6	chr17	5033659	+
intron-intron	ENST00000394947	ENST00000382080		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000394947	ENST00000421524		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000360439	ENST00000382080		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000360439	ENST00000421524		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000394949	ENST00000382080		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000394949	ENST00000421524		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000567289	ENST00000382080		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
intron-intron	ENST00000567289	ENST00000421524		ChiTaRS3.1			BI054950	SIN3A	chr15	75705295	+	SGCZ	chr8	14912171	+
3UTR-intron	ENST00000375114	ENST00000535458		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-3UTR	ENST00000375114	ENST00000290158		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000375114	ENST00000540627		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000375114	ENST00000537679		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000375114	ENST00000577918		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000246194	ENST00000535458		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-3UTR	ENST00000246194	ENST00000290158		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000246194	ENST00000540627		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000246194	ENST00000537679		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
3UTR-intron	ENST00000246194	ENST00000577918		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
intron-intron	ENST00000493399	ENST00000535458		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
intron-3UTR	ENST00000493399	ENST00000290158		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
intron-intron	ENST00000493399	ENST00000540627		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
intron-intron	ENST00000493399	ENST00000537679		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
intron-intron	ENST00000493399	ENST00000577918		ChiTaRS3.1			AA738059	RALY	chr20	32667880	-	KPNB1	chr17	45760041	-
Frame-shit	ENST00000263549	ENST00000263549		ChiTaRS3.1			BF959878	PARP12	chr7	139754461	-	PARP12	chr7	139757836	-
5CDS-intron	ENST00000263549	ENST00000470515		ChiTaRS3.1			BF959878	PARP12	chr7	139754461	-	PARP12	chr7	139757836	-
intron-3CDS	ENST00000470515	ENST00000263549		ChiTaRS3.1			BF959878	PARP12	chr7	139754461	-	PARP12	chr7	139757836	-
intron-intron	ENST00000470515	ENST00000470515		ChiTaRS3.1			BF959878	PARP12	chr7	139754461	-	PARP12	chr7	139757836	-
intron-intron	ENST00000354473	ENST00000346145		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000354473	ENST00000349607		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000354473	ENST00000463781		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000354473	ENST00000475231		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000354473	ENST00000478685		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000496809	ENST00000346145		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000496809	ENST00000349607		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000496809	ENST00000463781		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000496809	ENST00000475231		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
intron-intron	ENST00000496809	ENST00000478685		ChiTaRS3.1			BG015132	VPS72	chr1	151149497	+	MUC4	chr3	195515498	+
In-frame	ENST00000353703	ENST00000353703		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
5CDS-3UTR	ENST00000353703	ENST00000479421		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
5CDS-3UTR	ENST00000353703	ENST00000372839		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
3UTR-3CDS	ENST00000479421	ENST00000353703		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
3UTR-3UTR	ENST00000479421	ENST00000479421		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
3UTR-3UTR	ENST00000479421	ENST00000372839		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
In-frame	ENST00000372839	ENST00000353703		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
5CDS-3UTR	ENST00000372839	ENST00000479421		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
5CDS-3UTR	ENST00000372839	ENST00000372839		ChiTaRS3.1			BQ302015	YWHAB	chr20	43530306	-	YWHAB	chr20	43530376	+
5CDS-3UTR	ENST00000394997	ENST00000374078		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000394997	ENST00000374077		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000394997	ENST00000374072		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-intron	ENST00000394997	ENST00000397416		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000394997	ENST00000336695		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000337138	ENST00000374078		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000337138	ENST00000374077		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000337138	ENST00000374072		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-intron	ENST00000337138	ENST00000397416		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000337138	ENST00000336695		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000323441	ENST00000374078		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000323441	ENST00000374077		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000323441	ENST00000374072		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-intron	ENST00000323441	ENST00000397416		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000323441	ENST00000336695		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000557538	ENST00000374078		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000557538	ENST00000374077		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000557538	ENST00000374072		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-intron	ENST00000557538	ENST00000397416		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000557538	ENST00000336695		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000539097	ENST00000374078		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000539097	ENST00000374077		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000539097	ENST00000374072		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-intron	ENST00000539097	ENST00000397416		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
5CDS-3UTR	ENST00000539097	ENST00000336695		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
intron-3UTR	ENST00000557206	ENST00000374078		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
intron-3UTR	ENST00000557206	ENST00000374077		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
intron-3UTR	ENST00000557206	ENST00000374072		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
intron-intron	ENST00000557206	ENST00000397416		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
intron-3UTR	ENST00000557206	ENST00000336695		ChiTaRS3.1			BE545257	HIF1A	chr14	62207571	+	ROMO1	chr20	34288850	+
intron-intron	ENST00000393562	ENST00000393562		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393562	ENST00000369620		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393562	ENST00000393564		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393562	ENST00000497281		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000369620	ENST00000393562		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000369620	ENST00000369620		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000369620	ENST00000393564		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000369620	ENST00000497281		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393564	ENST00000393562		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393564	ENST00000369620		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393564	ENST00000393564		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000393564	ENST00000497281		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000497281	ENST00000393562		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000497281	ENST00000369620		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000497281	ENST00000393564		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-intron	ENST00000497281	ENST00000497281		ChiTaRS3.1			BQ352059	G6PD	chrX	153760922	-	G6PD	chrX	153761161	+
intron-3CDS	ENST00000232501	ENST00000232501		ChiTaRS3.1			DN989560	NPRL2	chr3	50387556	+	NPRL2	chr3	50387458	-
intron-intron	ENST00000232501	ENST00000493465		ChiTaRS3.1			DN989560	NPRL2	chr3	50387556	+	NPRL2	chr3	50387458	-
intron-3CDS	ENST00000493465	ENST00000232501		ChiTaRS3.1			DN989560	NPRL2	chr3	50387556	+	NPRL2	chr3	50387458	-
intron-intron	ENST00000493465	ENST00000493465		ChiTaRS3.1			DN989560	NPRL2	chr3	50387556	+	NPRL2	chr3	50387458	-
5CDS-intron	ENST00000000233	ENST00000000233		ChiTaRS3.1			G30809	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
5CDS-intron	ENST00000000233	ENST00000467281		ChiTaRS3.1			G30809	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
3UTR-intron	ENST00000467281	ENST00000000233		ChiTaRS3.1			G30809	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
3UTR-intron	ENST00000467281	ENST00000467281		ChiTaRS3.1			G30809	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
Frame-shit	ENST00000224167	ENST00000253083		ChiTaRS3.1			CB153680	PTGDS	chr9	139872044	+	HIP1R	chr12	123343442	+
5CDS-intron	ENST00000224167	ENST00000537322		ChiTaRS3.1			CB153680	PTGDS	chr9	139872044	+	HIP1R	chr12	123343442	+
Frame-shit	ENST00000371625	ENST00000253083		ChiTaRS3.1			CB153680	PTGDS	chr9	139872044	+	HIP1R	chr12	123343442	+
5CDS-intron	ENST00000371625	ENST00000537322		ChiTaRS3.1			CB153680	PTGDS	chr9	139872044	+	HIP1R	chr12	123343442	+
intron-3CDS	ENST00000460340	ENST00000253083		ChiTaRS3.1			CB153680	PTGDS	chr9	139872044	+	HIP1R	chr12	123343442	+
intron-intron	ENST00000460340	ENST00000537322		ChiTaRS3.1			CB153680	PTGDS	chr9	139872044	+	HIP1R	chr12	123343442	+
intron-3CDS	ENST00000390548	ENST00000547956		ChiTaRS3.1			AY533204	IGHG1	chr14	106207088	+	CHST11	chr12	104995683	+
intron-3CDS	ENST00000390548	ENST00000549260		ChiTaRS3.1			AY533204	IGHG1	chr14	106207088	+	CHST11	chr12	104995683	+
intron-3CDS	ENST00000390548	ENST00000303694		ChiTaRS3.1			AY533204	IGHG1	chr14	106207088	+	CHST11	chr12	104995683	+
intron-3CDS	ENST00000390548	ENST00000546689		ChiTaRS3.1			AY533204	IGHG1	chr14	106207088	+	CHST11	chr12	104995683	+
intron-intron	ENST00000390548	ENST00000550711		ChiTaRS3.1			AY533204	IGHG1	chr14	106207088	+	CHST11	chr12	104995683	+
intron-3CDS	ENST00000360947	ENST00000360947		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000360947	ENST00000451119		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000360947	ENST00000421093		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-intron	ENST00000360947	ENST00000556101		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000451119	ENST00000360947		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000451119	ENST00000451119		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000451119	ENST00000421093		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-intron	ENST00000451119	ENST00000556101		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000421093	ENST00000360947		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000421093	ENST00000451119		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000421093	ENST00000421093		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-intron	ENST00000421093	ENST00000556101		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000556101	ENST00000360947		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000556101	ENST00000451119		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-3CDS	ENST00000556101	ENST00000421093		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
intron-intron	ENST00000556101	ENST00000556101		ChiTaRS3.1			AI829676	ZNF219	chr14	21560669	+	ZNF219	chr14	21559222	+
In-frame	ENST00000334121	ENST00000334121		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
In-frame	ENST00000334121	ENST00000380918		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
5CDS-3UTR	ENST00000334121	ENST00000284041		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
In-frame	ENST00000380918	ENST00000334121		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
In-frame	ENST00000380918	ENST00000380918		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
5CDS-3UTR	ENST00000380918	ENST00000284041		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
3UTR-3CDS	ENST00000284041	ENST00000334121		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
3UTR-3CDS	ENST00000284041	ENST00000380918		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
3UTR-3UTR	ENST00000284041	ENST00000284041		ChiTaRS3.1			AW087368	SREK1	chr5	65466588	-	SREK1	chr5	65473410	-
Frame-shit	ENST00000382456	ENST00000382456		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000382456	ENST00000411763		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000382456	ENST00000292807		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
In-frame	ENST00000382456	ENST00000439647		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
5CDS-intron	ENST00000382456	ENST00000461733		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000411763	ENST00000382456		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000411763	ENST00000411763		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000411763	ENST00000292807		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
In-frame	ENST00000411763	ENST00000439647		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
5CDS-intron	ENST00000411763	ENST00000461733		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000292807	ENST00000382456		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000292807	ENST00000411763		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000292807	ENST00000292807		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
In-frame	ENST00000292807	ENST00000439647		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
5CDS-intron	ENST00000292807	ENST00000461733		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000439647	ENST00000382456		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000439647	ENST00000411763		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
Frame-shit	ENST00000439647	ENST00000292807		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
In-frame	ENST00000439647	ENST00000439647		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
5CDS-intron	ENST00000439647	ENST00000461733		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
3UTR-3CDS	ENST00000461733	ENST00000382456		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
3UTR-3CDS	ENST00000461733	ENST00000411763		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
3UTR-3CDS	ENST00000461733	ENST00000292807		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
3UTR-3CDS	ENST00000461733	ENST00000439647		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
3UTR-intron	ENST00000461733	ENST00000461733		ChiTaRS3.1			AW996595	AP2M1	chr3	183899716	+	AP2M1	chr3	183894790	+
In-frame	ENST00000534358	ENST00000534358		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000389506		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000354520		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000534358		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000389506		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000354520		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000534358		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000389506		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000354520		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AY187943	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000299767	ENST00000299767		ChiTaRS3.1			BG256795	HSP90B1	chr12	104335255	-	HSP90B1	chr12	104335294	+
3UTR-5UTR	ENST00000457543	ENST00000246554		ChiTaRS3.1			AW411483	ZNF853	chr7	6663311	-	COX6B1	chr19	36139234	+
3UTR-intron	ENST00000457543	ENST00000592141		ChiTaRS3.1			AW411483	ZNF853	chr7	6663311	-	COX6B1	chr19	36139234	+
3UTR-intron	ENST00000457543	ENST00000392201		ChiTaRS3.1			AW411483	ZNF853	chr7	6663311	-	COX6B1	chr19	36139234	+
intron-3CDS	ENST00000390548	ENST00000319592		ChiTaRS3.1			BF770043	IGHG1	chr14	106208245	+	RBM47	chr4	40440404	-
intron-3CDS	ENST00000390548	ENST00000381793		ChiTaRS3.1			BF770043	IGHG1	chr14	106208245	+	RBM47	chr4	40440404	-
intron-3CDS	ENST00000390548	ENST00000381795		ChiTaRS3.1			BF770043	IGHG1	chr14	106208245	+	RBM47	chr4	40440404	-
intron-3CDS	ENST00000390548	ENST00000295971		ChiTaRS3.1			BF770043	IGHG1	chr14	106208245	+	RBM47	chr4	40440404	-
intron-3CDS	ENST00000390548	ENST00000514014		ChiTaRS3.1			BF770043	IGHG1	chr14	106208245	+	RBM47	chr4	40440404	-
intron-intron	ENST00000390548	ENST00000515809		ChiTaRS3.1			BF770043	IGHG1	chr14	106208245	+	RBM47	chr4	40440404	-
intron-intron	ENST00000561976	ENST00000561976		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000561976	ENST00000389386		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000561976	ENST00000565452		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000389386	ENST00000561976		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000389386	ENST00000389386		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000389386	ENST00000565452		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000565452	ENST00000561976		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000565452	ENST00000389386		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000565452	ENST00000565452		ChiTaRS3.1			AW516612	VPS9D1	chr16	89784089	-	VPS9D1	chr16	89784157	+
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050792	KMT2A	chr11	118359134	+	AFF1	chr4	87994732	+
5UTR-3CDS	ENST00000489998	ENST00000361891		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5UTR-intron	ENST00000489998	ENST00000480213		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5UTR-intron	ENST00000489998	ENST00000368681		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
In-frame	ENST00000358292	ENST00000361891		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5CDS-intron	ENST00000358292	ENST00000480213		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5CDS-intron	ENST00000358292	ENST00000368681		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
In-frame	ENST00000368176	ENST00000361891		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5CDS-intron	ENST00000368176	ENST00000480213		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5CDS-intron	ENST00000368176	ENST00000368681		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
In-frame	ENST00000491942	ENST00000361891		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5CDS-intron	ENST00000491942	ENST00000480213		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
5CDS-intron	ENST00000491942	ENST00000368681		ChiTaRS3.1			CD703668	FCRL1	chr1	157773635	-	ILF2	chr1	153637812	-
In-frame	ENST00000348697	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000348697	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000348697	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000348697	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000348697	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000348697	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
5CDS-intron	ENST00000348697	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000402984	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000402984	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000402984	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000402984	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000402984	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000402984	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
5CDS-intron	ENST00000402984	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000262722	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000262722	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000262722	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000262722	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000262722	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000262722	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
5CDS-intron	ENST00000262722	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000327858	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000327858	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000327858	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000327858	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000327858	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000327858	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
5CDS-intron	ENST00000327858	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000442170	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000442170	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000442170	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000442170	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000442170	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000442170	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
5CDS-intron	ENST00000442170	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000340923	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000340923	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000340923	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000340923	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000340923	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
In-frame	ENST00000340923	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
5CDS-intron	ENST00000340923	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3CDS	ENST00000476366	ENST00000348697		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3CDS	ENST00000476366	ENST00000402984		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3CDS	ENST00000476366	ENST00000262722		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3CDS	ENST00000476366	ENST00000327858		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3CDS	ENST00000476366	ENST00000442170		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3CDS	ENST00000476366	ENST00000340923		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-intron	ENST00000476366	ENST00000476366		ChiTaRS3.1			BE931220	FBLN1	chr22	45929727	-	FBLN1	chr22	45929014	+
intron-3UTR	ENST00000409869	ENST00000354287		ChiTaRS3.1			AW895722	ARHGAP15	chr2	144461045	+	FBXO2	chr1	11708641	-
intron-intron	ENST00000409869	ENST00000475961		ChiTaRS3.1			AW895722	ARHGAP15	chr2	144461045	+	FBXO2	chr1	11708641	-
5CDS-3UTR	ENST00000295095	ENST00000354287		ChiTaRS3.1			AW895722	ARHGAP15	chr2	144461045	+	FBXO2	chr1	11708641	-
5CDS-intron	ENST00000295095	ENST00000475961		ChiTaRS3.1			AW895722	ARHGAP15	chr2	144461045	+	FBXO2	chr1	11708641	-
intron-3UTR	ENST00000473426	ENST00000354287		ChiTaRS3.1			AW895722	ARHGAP15	chr2	144461045	+	FBXO2	chr1	11708641	-
intron-intron	ENST00000473426	ENST00000475961		ChiTaRS3.1			AW895722	ARHGAP15	chr2	144461045	+	FBXO2	chr1	11708641	-
intron-3CDS	ENST00000369026	ENST00000389266		ChiTaRS3.1			AI206631	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000464132	ENST00000389266		ChiTaRS3.1			AI206631	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000307940	ENST00000389266		ChiTaRS3.1			AI206631	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000401084	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000401084	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000401084	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000401084	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264203	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264203	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264203	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375142	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375142	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375142	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000433834	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000433834	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000433834	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000264202	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264202	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000264202	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000482808	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000482808	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000482808	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000401084		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000264203		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000375142		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000433834		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000375144	ENST00000264202		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375144	ENST00000482808		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-5UTR	ENST00000375144	ENST00000375144		ChiTaRS3.1			BF987221	CAPZB	chr1	19746195	-	CAPZB	chr1	19705110	+
intron-3CDS	ENST00000357429	ENST00000346329		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000357429	ENST00000301843		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000357429	ENST00000527622		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000357429	ENST00000376561		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000357429	ENST00000538675		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397100	ENST00000346329		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397100	ENST00000301843		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397100	ENST00000527622		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397100	ENST00000376561		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397100	ENST00000538675		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397098	ENST00000346329		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000397098	ENST00000301843		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397098	ENST00000527622		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397098	ENST00000376561		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000397098	ENST00000538675		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000488073	ENST00000346329		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000488073	ENST00000301843		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000488073	ENST00000527622		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000488073	ENST00000376561		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-intron	ENST00000488073	ENST00000538675		ChiTaRS3.1			BQ358349	C7orf50	chr7	1166387	+	CTTN	chr11	70266526	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766325	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766325	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
3UTR-3UTR	ENST00000217402	ENST00000560606		ChiTaRS3.1			AI653324	CHMP4B	chr20	32441481	-	RBPMS2	chr15	65032795	+
3UTR-3UTR	ENST00000217402	ENST00000300069		ChiTaRS3.1			AI653324	CHMP4B	chr20	32441481	-	RBPMS2	chr15	65032795	+
intron-3CDS	ENST00000262764	ENST00000381638		ChiTaRS3.1			BF333583	PGS1	chr17	76417437	+	ZZEF1	chr17	3989894	-
intron-5UTR	ENST00000262764	ENST00000574474		ChiTaRS3.1			BF333583	PGS1	chr17	76417437	+	ZZEF1	chr17	3989894	-
intron-3CDS	ENST00000329897	ENST00000381638		ChiTaRS3.1			BF333583	PGS1	chr17	76417437	+	ZZEF1	chr17	3989894	-
intron-5UTR	ENST00000329897	ENST00000574474		ChiTaRS3.1			BF333583	PGS1	chr17	76417437	+	ZZEF1	chr17	3989894	-
intron-3CDS	ENST00000588281	ENST00000381638		ChiTaRS3.1			BF333583	PGS1	chr17	76417437	+	ZZEF1	chr17	3989894	-
intron-5UTR	ENST00000588281	ENST00000574474		ChiTaRS3.1			BF333583	PGS1	chr17	76417437	+	ZZEF1	chr17	3989894	-
intron-3CDS	ENST00000493112	ENST00000371464		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-3CDS	ENST00000493112	ENST00000371467		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-intron	ENST00000493112	ENST00000371469		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-3CDS	ENST00000307227	ENST00000371464		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-3CDS	ENST00000307227	ENST00000371467		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-intron	ENST00000307227	ENST00000371469		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-3CDS	ENST00000492795	ENST00000371464		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-3CDS	ENST00000492795	ENST00000371467		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
intron-intron	ENST00000492795	ENST00000371469		ChiTaRS3.1			AV660800	SUCLG2	chr3	67454780	-	RBP4	chr10	95360750	-
5CDS-intron	ENST00000337714	ENST00000406486		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000337714	ENST00000358431		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000337714	ENST00000401395		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000314126	ENST00000406486		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000314126	ENST00000358431		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000314126	ENST00000401395		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000571629	ENST00000406486		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000571629	ENST00000358431		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000571629	ENST00000401395		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000572557	ENST00000406486		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000572557	ENST00000358431		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000572557	ENST00000401395		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000539273	ENST00000406486		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000539273	ENST00000358431		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
5CDS-intron	ENST00000539273	ENST00000401395		ChiTaRS3.1			AF015910	AKAP1	chr17	55183579	+	KIAA1671	chr22	25508113	+
3UTR-3UTR	ENST00000474485	ENST00000261497		ChiTaRS3.1			BG977182	NOL7	chr6	13620706	+	USP22	chr17	20905047	-
3UTR-3UTR	ENST00000474485	ENST00000537526		ChiTaRS3.1			BG977182	NOL7	chr6	13620706	+	USP22	chr17	20905047	-
3UTR-intron	ENST00000474485	ENST00000455117		ChiTaRS3.1			BG977182	NOL7	chr6	13620706	+	USP22	chr17	20905047	-
5CDS-3UTR	ENST00000451315	ENST00000261497		ChiTaRS3.1			BG977182	NOL7	chr6	13620706	+	USP22	chr17	20905047	-
5CDS-3UTR	ENST00000451315	ENST00000537526		ChiTaRS3.1			BG977182	NOL7	chr6	13620706	+	USP22	chr17	20905047	-
5CDS-intron	ENST00000451315	ENST00000455117		ChiTaRS3.1			BG977182	NOL7	chr6	13620706	+	USP22	chr17	20905047	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835111	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
Frame-shit	ENST00000529410	ENST00000529410		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000529410	ENST00000533560		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000529410	ENST00000361794		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000529410	ENST00000368139		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000529410	ENST00000526019		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000529410	ENST00000368136		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000533560	ENST00000529410		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000533560	ENST00000533560		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000533560	ENST00000361794		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000533560	ENST00000368139		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000533560	ENST00000526019		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000533560	ENST00000368136		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000361794	ENST00000529410		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000361794	ENST00000533560		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000361794	ENST00000361794		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000361794	ENST00000368139		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000361794	ENST00000526019		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000361794	ENST00000368136		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368139	ENST00000529410		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368139	ENST00000533560		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368139	ENST00000361794		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368139	ENST00000368139		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368139	ENST00000526019		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368139	ENST00000368136		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000526019	ENST00000529410		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000526019	ENST00000533560		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000526019	ENST00000361794		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000526019	ENST00000368139		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000526019	ENST00000526019		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000526019	ENST00000368136		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368136	ENST00000529410		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368136	ENST00000533560		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368136	ENST00000361794		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368136	ENST00000368139		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368136	ENST00000526019		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
Frame-shit	ENST00000368136	ENST00000368136		ChiTaRS3.1			BQ352612	L3MBTL3	chr6	130374043	-	L3MBTL3	chr6	130378602	-
5CDS-intron	ENST00000318522	ENST00000389048		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000402711	ENST00000389048		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
intron-intron	ENST00000482660	ENST00000389048		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000401738	ENST00000389048		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
intron-intron	ENST00000453191	ENST00000389048		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
intron-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
intron-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			JQ828841	EML4	chr2	42483770	+	ALK	chr2	29446449	-
In-frame	ENST00000333090	ENST00000399788		ChiTaRS3.1			DA455152	TSKU	chr11	76506776	+	KDM5A	chr12	495134	-
5CDS-intron	ENST00000333090	ENST00000540838		ChiTaRS3.1			DA455152	TSKU	chr11	76506776	+	KDM5A	chr12	495134	-
5CDS-intron	ENST00000333090	ENST00000382815		ChiTaRS3.1			DA455152	TSKU	chr11	76506776	+	KDM5A	chr12	495134	-
Frame-shit	ENST00000527881	ENST00000399788		ChiTaRS3.1			DA455152	TSKU	chr11	76506776	+	KDM5A	chr12	495134	-
5CDS-intron	ENST00000527881	ENST00000540838		ChiTaRS3.1			DA455152	TSKU	chr11	76506776	+	KDM5A	chr12	495134	-
5CDS-intron	ENST00000527881	ENST00000382815		ChiTaRS3.1			DA455152	TSKU	chr11	76506776	+	KDM5A	chr12	495134	-
intron-intron	ENST00000299381	ENST00000360284		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000545748		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000550082		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000547206		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000243050		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000394825		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000394824		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000299381	ENST00000548232		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000360284		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000545748		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000550082		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000547206		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000243050		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000394825		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000394824		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
intron-intron	ENST00000470481	ENST00000548232		ChiTaRS3.1			BF928744	ANAPC16	chr10	73822406	+	NR4A1	chr12	52447673	-
3UTR-3CDS	ENST00000248553	ENST00000239938		ChiTaRS3.1			AA903814	HSPB1	chr7	75933533	-	EGR1	chr5	137802528	-
3UTR-3CDS	ENST00000429938	ENST00000239938		ChiTaRS3.1			AA903814	HSPB1	chr7	75933533	-	EGR1	chr5	137802528	-
intron-3CDS	ENST00000529689	ENST00000450633		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529689	ENST00000296210		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529689	ENST00000355552		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529689	ENST00000489960		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-intron	ENST00000529689	ENST00000465915		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000455220	ENST00000450633		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000455220	ENST00000296210		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000455220	ENST00000355552		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000455220	ENST00000489960		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-intron	ENST00000455220	ENST00000465915		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525504	ENST00000450633		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525504	ENST00000296210		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525504	ENST00000355552		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525504	ENST00000489960		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-intron	ENST00000525504	ENST00000465915		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525503	ENST00000450633		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525503	ENST00000296210		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525503	ENST00000355552		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000525503	ENST00000489960		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-intron	ENST00000525503	ENST00000465915		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529611	ENST00000450633		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529611	ENST00000296210		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529611	ENST00000355552		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529611	ENST00000489960		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-intron	ENST00000529611	ENST00000465915		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529073	ENST00000450633		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529073	ENST00000296210		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529073	ENST00000355552		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3CDS	ENST00000529073	ENST00000489960		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-intron	ENST00000529073	ENST00000465915		ChiTaRS3.1			BE703295	CCDC90B	chr11	82996809	-	TPRA1	chr3	127292529	+
intron-3UTR	ENST00000300737	ENST00000316509		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000300737	ENST00000404970		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000300737	ENST00000488857		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000300737	ENST00000481878		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-3UTR	ENST00000527651	ENST00000316509		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000527651	ENST00000404970		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000527651	ENST00000488857		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000527651	ENST00000481878		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-3UTR	ENST00000527484	ENST00000316509		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000527484	ENST00000404970		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000527484	ENST00000488857		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000527484	ENST00000481878		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-3UTR	ENST00000533977	ENST00000316509		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000533977	ENST00000404970		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000533977	ENST00000488857		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
intron-intron	ENST00000533977	ENST00000481878		ChiTaRS3.1			BE764151	STIM1	chr11	4109779	-	VAMP2	chr17	8062834	-
Frame-shit	ENST00000262238	ENST00000262238		ChiTaRS3.1			BM924295	YY1	chr14	100728789	+	YY1	chr14	100728671	-
intron-3UTR	ENST00000450536	ENST00000216044		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000450536	ENST00000460605		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000367663	ENST00000216044		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000367663	ENST00000460605		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000409812	ENST00000216044		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000409812	ENST00000460605		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000258062	ENST00000216044		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000258062	ENST00000460605		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000415951	ENST00000216044		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000415951	ENST00000460605		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-3UTR	ENST00000531675	ENST00000216044		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
intron-intron	ENST00000531675	ENST00000460605		ChiTaRS3.1			BF805059	REPS1	chr6	139232433	-	GTPBP1	chr22	39127493	+
In-frame	ENST00000503238	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000503238	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000503238	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000503238	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000358350	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000358350	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000358350	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000358350	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000537810	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000537810	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
In-frame	ENST00000537810	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000537810	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-3CDS	ENST00000264319	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-3CDS	ENST00000264319	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-3CDS	ENST00000264319	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-intron	ENST00000264319	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000507711	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000507711	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000507711	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-intron	ENST00000507711	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000514783	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000514783	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000514783	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-intron	ENST00000514783	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-3CDS	ENST00000507873	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-3CDS	ENST00000507873	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-3CDS	ENST00000507873	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
5UTR-intron	ENST00000507873	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000506685	ENST00000534358		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000506685	ENST00000389506		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000506685	ENST00000354520		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-intron	ENST00000506685	ENST00000420751		ChiTaRS3.1			DQ299936	FRYL	chr4	48533173	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000310441	ENST00000310441		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000310441	ENST00000369984		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000310441	ENST00000354233		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-intron	ENST00000310441	ENST00000461098		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000369984	ENST00000310441		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000369984	ENST00000369984		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000369984	ENST00000354233		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-intron	ENST00000369984	ENST00000461098		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000354233	ENST00000310441		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000354233	ENST00000369984		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000354233	ENST00000354233		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-intron	ENST00000354233	ENST00000461098		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000461098	ENST00000310441		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000461098	ENST00000369984		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000461098	ENST00000354233		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-intron	ENST00000461098	ENST00000461098		ChiTaRS3.1			AW836706	HCFC1	chrX	153220827	+	HCFC1	chrX	153221692	-
intron-3CDS	ENST00000579226	ENST00000579226		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000579226	ENST00000217652		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000579226	ENST00000578611		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000579226	ENST00000585090		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000579226	ENST00000580887		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000579226	ENST00000536605		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-3CDS	ENST00000217652	ENST00000579226		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-3CDS	ENST00000217652	ENST00000217652		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-3CDS	ENST00000217652	ENST00000578611		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-intron	ENST00000217652	ENST00000585090		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-intron	ENST00000217652	ENST00000580887		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-intron	ENST00000217652	ENST00000536605		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-3CDS	ENST00000578611	ENST00000579226		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-3CDS	ENST00000578611	ENST00000217652		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-3CDS	ENST00000578611	ENST00000578611		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-intron	ENST00000578611	ENST00000585090		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-intron	ENST00000578611	ENST00000580887		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5UTR-intron	ENST00000578611	ENST00000536605		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000585090	ENST00000579226		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000585090	ENST00000217652		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000585090	ENST00000578611		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000585090	ENST00000585090		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000585090	ENST00000580887		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000585090	ENST00000536605		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000580887	ENST00000579226		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000580887	ENST00000217652		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000580887	ENST00000578611		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000580887	ENST00000585090		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000580887	ENST00000580887		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000580887	ENST00000536605		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000536605	ENST00000579226		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000536605	ENST00000217652		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-3CDS	ENST00000536605	ENST00000578611		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000536605	ENST00000585090		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000536605	ENST00000580887		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
intron-intron	ENST00000536605	ENST00000536605		ChiTaRS3.1			BF895637	MYL12A	chr18	3247826	-	MYL12A	chr18	3253286	+
5CDS-intron	ENST00000217402	ENST00000313833		ChiTaRS3.1			BU624572	CHMP4B	chr20	32399341	-	FBXO34	chr14	55766161	+
5CDS-intron	ENST00000217402	ENST00000555087		ChiTaRS3.1			BU624572	CHMP4B	chr20	32399341	-	FBXO34	chr14	55766161	+
5CDS-intron	ENST00000217402	ENST00000440021		ChiTaRS3.1			BU624572	CHMP4B	chr20	32399341	-	FBXO34	chr14	55766161	+
intron-3CDS	ENST00000390394	ENST00000221801		ChiTaRS3.1			BM054659	TRBV20-1	chr7	142482370	-	FBL	chr19	40330928	+
intron-intron	ENST00000390394	ENST00000593503		ChiTaRS3.1			BM054659	TRBV20-1	chr7	142482370	-	FBL	chr19	40330928	+
intron-intron	ENST00000383440	ENST00000383440		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000383440	ENST00000262126		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000383440	ENST00000540578		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000383440	ENST00000400020		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000262126	ENST00000383440		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000262126	ENST00000262126		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000262126	ENST00000540578		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000262126	ENST00000400020		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000540578	ENST00000383440		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000540578	ENST00000262126		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000540578	ENST00000540578		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000540578	ENST00000400020		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000400020	ENST00000383440		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000400020	ENST00000262126		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000400020	ENST00000540578		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-intron	ENST00000400020	ENST00000400020		ChiTaRS3.1			AU185692	ANKRD12	chr18	9182376	-	ANKRD12	chr18	9221997	-
intron-3CDS	ENST00000369905	ENST00000426263		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-5UTR	ENST00000369905	ENST00000475162		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000369905	ENST00000415851		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000369905	ENST00000372500		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-3CDS	ENST00000470322	ENST00000426263		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-5UTR	ENST00000470322	ENST00000475162		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000470322	ENST00000415851		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000470322	ENST00000372500		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-3CDS	ENST00000487599	ENST00000426263		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-5UTR	ENST00000487599	ENST00000475162		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000487599	ENST00000415851		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000487599	ENST00000372500		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-3CDS	ENST00000545684	ENST00000426263		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-5UTR	ENST00000545684	ENST00000475162		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000545684	ENST00000415851		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000545684	ENST00000372500		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-3CDS	ENST00000446605	ENST00000426263		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-5UTR	ENST00000446605	ENST00000475162		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000446605	ENST00000415851		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
intron-intron	ENST00000446605	ENST00000372500		ChiTaRS3.1			AW366615	ACTR1A	chr10	104240498	-	SLC2A1	chr1	43396424	-
Frame-shit	ENST00000300527	ENST00000300527		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000300527	ENST00000310645		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000300527	ENST00000357838		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000300527	ENST00000409416		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000300527	ENST00000397763		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
5CDS-intron	ENST00000300527	ENST00000460886		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000310645	ENST00000300527		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000310645	ENST00000310645		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000310645	ENST00000357838		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000310645	ENST00000409416		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000310645	ENST00000397763		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
5CDS-intron	ENST00000310645	ENST00000460886		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000357838	ENST00000300527		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000357838	ENST00000310645		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000357838	ENST00000357838		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000357838	ENST00000409416		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000357838	ENST00000397763		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
5CDS-intron	ENST00000357838	ENST00000460886		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000409416	ENST00000300527		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000409416	ENST00000310645		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000409416	ENST00000357838		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000409416	ENST00000409416		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000409416	ENST00000397763		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
5CDS-intron	ENST00000409416	ENST00000460886		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000397763	ENST00000300527		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000397763	ENST00000310645		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000397763	ENST00000357838		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000397763	ENST00000409416		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000397763	ENST00000397763		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
5CDS-intron	ENST00000397763	ENST00000460886		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
intron-3CDS	ENST00000460886	ENST00000300527		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
intron-3CDS	ENST00000460886	ENST00000310645		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
intron-3CDS	ENST00000460886	ENST00000357838		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
intron-3CDS	ENST00000460886	ENST00000409416		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
intron-3CDS	ENST00000460886	ENST00000397763		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
intron-intron	ENST00000460886	ENST00000460886		ChiTaRS3.1			BF743759	COL6A2	chr21	47531997	-	COL6A2	chr21	47532166	+
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			DQ898313	BCR	chr22	23524426	+	ABL1	chr9	133738147	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			DQ898313	BCR	chr22	23524426	+	ABL1	chr9	133738147	+
Frame-shit	ENST00000398512	ENST00000318560		ChiTaRS3.1			DQ898313	BCR	chr22	23524426	+	ABL1	chr9	133738147	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			DQ898313	BCR	chr22	23524426	+	ABL1	chr9	133738147	+
intron-intron	ENST00000407426	ENST00000464524		ChiTaRS3.1			DA761308	WDR43	chr2	29136613	+	SACM1L	chr3	45730927	+
intron-5UTR	ENST00000407426	ENST00000418611		ChiTaRS3.1			DA761308	WDR43	chr2	29136613	+	SACM1L	chr3	45730927	+
intron-5UTR	ENST00000407426	ENST00000389061		ChiTaRS3.1			DA761308	WDR43	chr2	29136613	+	SACM1L	chr3	45730927	+
intron-intron	ENST00000407426	ENST00000541314		ChiTaRS3.1			DA761308	WDR43	chr2	29136613	+	SACM1L	chr3	45730927	+
In-frame	ENST00000534358	ENST00000534358		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000389506		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000354520		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000534358		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000389506		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000354520		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000534358		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000389506		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000354520		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
3UTR-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AY187944	KMT2A	chr11	118355030	+	KMT2A	chr11	118339488	+
intron-3UTR	ENST00000357039	ENST00000435881		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000357039	ENST00000246912		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000357039	ENST00000346833		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000419564	ENST00000435881		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000419564	ENST00000246912		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000419564	ENST00000346833		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000520103	ENST00000435881		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000520103	ENST00000246912		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000520103	ENST00000346833		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000522527	ENST00000435881		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000522527	ENST00000246912		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000522527	ENST00000346833		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000520203	ENST00000435881		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000520203	ENST00000246912		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
intron-3UTR	ENST00000520203	ENST00000346833		ChiTaRS3.1			AW881454	PEX2	chr8	77898518	+	MLX	chr17	40724312	-
5CDS-intron	ENST00000216181	ENST00000262570		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
5CDS-intron	ENST00000216181	ENST00000448878		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
5CDS-intron	ENST00000216181	ENST00000476546		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
5CDS-intron	ENST00000216181	ENST00000542753		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000475726	ENST00000262570		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000475726	ENST00000448878		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000475726	ENST00000476546		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000475726	ENST00000542753		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000401701	ENST00000262570		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000401701	ENST00000448878		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000401701	ENST00000476546		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000401701	ENST00000542753		ChiTaRS3.1			BP288008	MYH9	chr22	36689378	-	CHCHD3	chr7	132720519	-
intron-intron	ENST00000411458	ENST00000411458		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000411458	ENST00000539851		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000411458	ENST00000377702		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000411458	ENST00000438980		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000411458	ENST00000313074		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000539851	ENST00000411458		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000539851	ENST00000539851		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000539851	ENST00000377702		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000539851	ENST00000438980		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000539851	ENST00000313074		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000377702	ENST00000411458		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000377702	ENST00000539851		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000377702	ENST00000377702		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000377702	ENST00000438980		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000377702	ENST00000313074		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000438980	ENST00000411458		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000438980	ENST00000539851		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000438980	ENST00000377702		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000438980	ENST00000438980		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000438980	ENST00000313074		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000313074	ENST00000411458		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000313074	ENST00000539851		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000313074	ENST00000377702		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000313074	ENST00000438980		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
intron-intron	ENST00000313074	ENST00000313074		ChiTaRS3.1			DA440013	GPR137	chr11	64053557	+	GPR137	chr11	64053507	-
3UTR-intron	ENST00000304166	ENST00000545844		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000567887		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000372915		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000361689		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000539005		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000317713		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000564288		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000289893		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000536367		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000484793		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000602421		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
3UTR-intron	ENST00000304166	ENST00000476350		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000545844		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000567887		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000372915		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000361689		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000539005		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000317713		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000564288		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000289893		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000536367		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000484793		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000602421		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409363	ENST00000476350		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000545844		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000567887		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000372915		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000361689		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000539005		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000317713		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000564288		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000289893		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000536367		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000484793		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000602421		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000396211	ENST00000476350		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000545844		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000567887		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000372915		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000361689		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000539005		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000317713		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000564288		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000289893		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000536367		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000484793		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000602421		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
intron-intron	ENST00000409489	ENST00000476350		ChiTaRS3.1			BE699333	ADCYAP1R1	chr7	31149381	-	MACF1	chr1	39548128	-
5UTR-3CDS	ENST00000321153	ENST00000321153		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
5UTR-intron	ENST00000321153	ENST00000532004		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
5UTR-intron	ENST00000321153	ENST00000530797		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
intron-3CDS	ENST00000532004	ENST00000321153		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
intron-intron	ENST00000532004	ENST00000532004		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
intron-intron	ENST00000532004	ENST00000530797		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
intron-3CDS	ENST00000530797	ENST00000321153		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
intron-intron	ENST00000530797	ENST00000532004		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
intron-intron	ENST00000530797	ENST00000530797		ChiTaRS3.1			BF813426	RPLP2	chr11	809968	-	RPLP2	chr11	810304	+
Frame-shit	ENST00000426174	ENST00000535572		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
Frame-shit	ENST00000426174	ENST00000537687		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
Frame-shit	ENST00000426174	ENST00000315939		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000426174	ENST00000447667		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000426174	ENST00000530271		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000426174	ENST00000540360		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000426174	ENST00000340908		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000426174	ENST00000574564		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
Frame-shit	ENST00000303372	ENST00000535572		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
Frame-shit	ENST00000303372	ENST00000537687		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
Frame-shit	ENST00000303372	ENST00000315939		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000303372	ENST00000447667		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000303372	ENST00000530271		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000303372	ENST00000540360		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000303372	ENST00000340908		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
5CDS-intron	ENST00000303372	ENST00000574564		ChiTaRS3.1			BF931307	TCTN2	chr12	124191379	+	WNK1	chr12	971395	+
intron-3CDS	ENST00000547776	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547776	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547776	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547776	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547776	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547776	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000547776	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000547776	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000329257	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000329257	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000329257	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000329257	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000329257	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000329257	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000329257	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000329257	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547010	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547010	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547010	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547010	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547010	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547010	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000547010	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000547010	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000341752	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000341752	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000341752	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000341752	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000341752	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000341752	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000341752	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000341752	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549558	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549558	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549558	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549558	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549558	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549558	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000549558	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000549558	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550693	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550693	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550693	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550693	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550693	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550693	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000550693	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000550693	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549025	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549025	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549025	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549025	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549025	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549025	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000549025	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000549025	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549493	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549493	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549493	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549493	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549493	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000549493	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000549493	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000549493	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547446	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547446	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547446	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547446	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547446	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000547446	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000547446	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000547446	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000333732	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000333732	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000333732	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000333732	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000333732	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000333732	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000333732	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000333732	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546568	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546568	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546568	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546568	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546568	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546568	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000546568	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000546568	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000332712	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000332712	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000332712	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000332712	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000332712	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000332712	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000332712	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000332712	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546960	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546960	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546960	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546960	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546960	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000546960	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000546960	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000546960	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550833	ENST00000449576		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550833	ENST00000396099		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550833	ENST00000425416		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550833	ENST00000256720		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550833	ENST00000396097		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-3CDS	ENST00000550833	ENST00000404113		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000550833	ENST00000464517		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000550833	ENST00000396098		ChiTaRS3.1			BF932023	ANKS1B	chr12	99166957	+	LPIN1	chr2	11945273	-
intron-intron	ENST00000216281	ENST00000422163		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000216281	ENST00000491100		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000216281	ENST00000313601		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000216281	ENST00000536647		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000216281	ENST00000440628		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000216281	ENST00000451956		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000216281	ENST00000266027		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000334701	ENST00000422163		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000334701	ENST00000491100		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000334701	ENST00000313601		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000334701	ENST00000536647		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000334701	ENST00000440628		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000334701	ENST00000451956		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000334701	ENST00000266027		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000441629	ENST00000422163		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000441629	ENST00000491100		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000441629	ENST00000313601		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000441629	ENST00000536647		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000441629	ENST00000440628		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000441629	ENST00000451956		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000441629	ENST00000266027		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000558600	ENST00000422163		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000558600	ENST00000491100		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000558600	ENST00000313601		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000558600	ENST00000536647		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000558600	ENST00000440628		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-intron	ENST00000558600	ENST00000451956		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3UTR	ENST00000558600	ENST00000266027		ChiTaRS3.1			BM450613	HSP90AA1	chr14	102549540	+	GNAI2	chr3	50296695	+
intron-3CDS	ENST00000356663	ENST00000431666		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-3CDS	ENST00000356663	ENST00000338624		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-3CDS	ENST00000356663	ENST00000245615		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-intron	ENST00000356663	ENST00000391754		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-intron	ENST00000356663	ENST00000474910		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-3CDS	ENST00000333175	ENST00000431666		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-3CDS	ENST00000333175	ENST00000338624		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-3CDS	ENST00000333175	ENST00000245615		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-intron	ENST00000333175	ENST00000391754		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-intron	ENST00000333175	ENST00000474910		ChiTaRS3.1			BF877350	TMEM259	chr19	1012159	+	MBOAT7	chr19	54678003	-
intron-intron	ENST00000393721	ENST00000393721		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000370028		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000350060		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000370016		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000537206		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000467421		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000393721		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000370028		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000350060		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000370016		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000537206		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000467421		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000393721		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000370028		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000350060		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000370016		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000537206		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000467421		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000393721		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000370028		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000350060		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000370016		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000537206		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000467421		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000393721		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000370028		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000350060		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000370016		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000537206		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000467421		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000393721		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000370028		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000350060		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000370016		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000537206		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000467421		ChiTaRS3.1			EL583440	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000382679	ENST00000351989		ChiTaRS3.1			BF896040	DEFA1	chr8	6875823	+	DGCR8	chr22	20079773	+
intron-intron	ENST00000382679	ENST00000383024		ChiTaRS3.1			BF896040	DEFA1	chr8	6875823	+	DGCR8	chr22	20079773	+
intron-intron	ENST00000382679	ENST00000407755		ChiTaRS3.1			BF896040	DEFA1	chr8	6875823	+	DGCR8	chr22	20079773	+
intron-intron	ENST00000382692	ENST00000351989		ChiTaRS3.1			BF896040	DEFA1	chr8	6875823	+	DGCR8	chr22	20079773	+
intron-intron	ENST00000382692	ENST00000383024		ChiTaRS3.1			BF896040	DEFA1	chr8	6875823	+	DGCR8	chr22	20079773	+
intron-intron	ENST00000382692	ENST00000407755		ChiTaRS3.1			BF896040	DEFA1	chr8	6875823	+	DGCR8	chr22	20079773	+
In-frame	ENST00000314616	ENST00000314616		ChiTaRS3.1			BF853696	SUPT6H	chr17	27011888	-	SUPT6H	chr17	27017210	-
In-frame	ENST00000314616	ENST00000347486		ChiTaRS3.1			BF853696	SUPT6H	chr17	27011888	-	SUPT6H	chr17	27017210	-
In-frame	ENST00000347486	ENST00000314616		ChiTaRS3.1			BF853696	SUPT6H	chr17	27011888	-	SUPT6H	chr17	27017210	-
In-frame	ENST00000347486	ENST00000347486		ChiTaRS3.1			BF853696	SUPT6H	chr17	27011888	-	SUPT6H	chr17	27017210	-
intron-intron	ENST00000366684	ENST00000294256		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366684	ENST00000377190		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366684	ENST00000307289		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366684	ENST00000526060		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366684	ENST00000526121		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366683	ENST00000294256		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366683	ENST00000377190		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366683	ENST00000307289		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366683	ENST00000526060		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-intron	ENST00000366683	ENST00000526121		ChiTaRS3.1			BG994562	ACTA1	chr1	229567804	-	SYVN1	chr11	64897689	-
intron-3CDS	ENST00000239223	ENST00000395925		ChiTaRS3.1			BE181536	DUSP1	chr5	172195904	+	GLI3	chr7	42187831	+
intron-5UTR	ENST00000239223	ENST00000479210		ChiTaRS3.1			BE181536	DUSP1	chr5	172195904	+	GLI3	chr7	42187831	+
intron-intron	ENST00000239223	ENST00000437480		ChiTaRS3.1			BE181536	DUSP1	chr5	172195904	+	GLI3	chr7	42187831	+
intron-3CDS	ENST00000252136	ENST00000388802		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000252136	ENST00000326382		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000252136	ENST00000464752		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000403707	ENST00000388802		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000403707	ENST00000326382		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000403707	ENST00000464752		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000404751	ENST00000388802		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000404751	ENST00000326382		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000404751	ENST00000464752		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000439169	ENST00000388802		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000439169	ENST00000326382		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000439169	ENST00000464752		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000492988	ENST00000388802		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000492988	ENST00000326382		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000492988	ENST00000464752		ChiTaRS3.1			BC060318	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
In-frame	ENST00000373316	ENST00000263801		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000373316	ENST00000382039		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000373316	ENST00000382044		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000373316	ENST00000450115		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
5CDS-intron	ENST00000373316	ENST00000605155		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000442431	ENST00000263801		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000442431	ENST00000382039		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000442431	ENST00000382044		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000442431	ENST00000450115		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
5CDS-intron	ENST00000442431	ENST00000605155		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000537456	ENST00000263801		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000537456	ENST00000382039		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000537456	ENST00000382044		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
In-frame	ENST00000537456	ENST00000450115		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
5CDS-intron	ENST00000537456	ENST00000605155		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
3UTR-3CDS	ENST00000476531	ENST00000263801		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
3UTR-3CDS	ENST00000476531	ENST00000382039		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
3UTR-3CDS	ENST00000476531	ENST00000382044		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
3UTR-3CDS	ENST00000476531	ENST00000450115		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
3UTR-intron	ENST00000476531	ENST00000605155		ChiTaRS3.1			BQ349520	PGK1	chrX	77380895	+	TP53BP1	chr15	43705524	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766331	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766331	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000495165	ENST00000495165		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000495165	ENST00000308284		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000495165	ENST00000464631		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000308284	ENST00000495165		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000308284	ENST00000308284		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000308284	ENST00000464631		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000464631	ENST00000495165		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000464631	ENST00000308284		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000464631	ENST00000464631		ChiTaRS3.1			BX494775	SEC16B	chr1	177906406	+	SEC16B	chr1	177911174	-
intron-intron	ENST00000350061	ENST00000350061		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000350061	ENST00000288139		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000350061	ENST00000422281		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000350061	ENST00000498251		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000350061	ENST00000540742		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000350061	ENST00000544977		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000288139	ENST00000350061		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000288139	ENST00000288139		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000288139	ENST00000422281		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000288139	ENST00000498251		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000288139	ENST00000540742		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000288139	ENST00000544977		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000422281	ENST00000350061		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000422281	ENST00000288139		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000422281	ENST00000422281		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000422281	ENST00000498251		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000422281	ENST00000540742		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000422281	ENST00000544977		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000498251	ENST00000350061		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000498251	ENST00000288139		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000498251	ENST00000422281		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000498251	ENST00000498251		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000498251	ENST00000540742		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000498251	ENST00000544977		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000540742	ENST00000350061		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000540742	ENST00000288139		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000540742	ENST00000422281		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000540742	ENST00000498251		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000540742	ENST00000540742		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000540742	ENST00000544977		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000544977	ENST00000350061		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000544977	ENST00000288139		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000544977	ENST00000422281		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000544977	ENST00000498251		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000544977	ENST00000540742		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
intron-intron	ENST00000544977	ENST00000544977		ChiTaRS3.1			AW997267	CACNA1D	chr3	53651865	-	CACNA1D	chr3	53658487	+
5CDS-intron	ENST00000376929	ENST00000374662		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000469186		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000427295		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000490492		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000454191		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000476285		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000422433		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000461067		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-3UTR	ENST00000376929	ENST00000230236		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000480183		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000414463		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000376929	ENST00000481255		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000374662		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000469186		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000427295		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000490492		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000454191		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000476285		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000422433		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000461067		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-3UTR	ENST00000506690	ENST00000230236		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000480183		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000414463		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-intron	ENST00000506690	ENST00000481255		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000374662		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000469186		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000427295		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000490492		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000454191		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000476285		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000422433		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000461067		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-3UTR	ENST00000389805	ENST00000230236		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000480183		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000414463		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000389805	ENST00000481255		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000374662		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000469186		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000427295		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000490492		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000454191		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000476285		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000422433		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000461067		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-3UTR	ENST00000402874	ENST00000230236		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000480183		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000414463		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000402874	ENST00000481255		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000374662		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000469186		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000427295		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000490492		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000454191		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000476285		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000422433		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000461067		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-3UTR	ENST00000510187	ENST00000230236		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000480183		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000414463		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000510187	ENST00000481255		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000374662		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000469186		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000427295		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000490492		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000454191		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000476285		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000422433		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000461067		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-3UTR	ENST00000360718	ENST00000230236		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000480183		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000414463		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
5CDS-intron	ENST00000360718	ENST00000481255		ChiTaRS3.1			BF765619	SQSTM1	chr5	179260105	+	HSD17B8	chr6	4406730	+
intron-3UTR	ENST00000216181	ENST00000216181		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-intron	ENST00000216181	ENST00000475726		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-intron	ENST00000216181	ENST00000401701		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-3UTR	ENST00000475726	ENST00000216181		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-intron	ENST00000475726	ENST00000475726		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-intron	ENST00000475726	ENST00000401701		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-3UTR	ENST00000401701	ENST00000216181		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-intron	ENST00000401701	ENST00000475726		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
intron-intron	ENST00000401701	ENST00000401701		ChiTaRS3.1			BF733247	MYH9	chr22	36681954	+	MYH9	chr22	36678578	-
In-frame	ENST00000263094	ENST00000263094		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000263094	ENST00000433129		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000263094	ENST00000435683		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
5CDS-intron	ENST00000263094	ENST00000533574		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000433129	ENST00000263094		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000433129	ENST00000433129		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000433129	ENST00000435683		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
5CDS-intron	ENST00000433129	ENST00000533574		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000435683	ENST00000263094		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000435683	ENST00000433129		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
In-frame	ENST00000435683	ENST00000435683		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
5CDS-intron	ENST00000435683	ENST00000533574		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
intron-3CDS	ENST00000533574	ENST00000263094		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
intron-3CDS	ENST00000533574	ENST00000433129		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
intron-3CDS	ENST00000533574	ENST00000435683		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
intron-intron	ENST00000533574	ENST00000533574		ChiTaRS3.1			BI012955	ABCA7	chr19	1058747	+	ABCA7	chr19	1058915	-
intron-3CDS	ENST00000397063	ENST00000397063		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397063	ENST00000397062		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397063	ENST00000446151		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397063	ENST00000464747		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-intron	ENST00000397063	ENST00000423513		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397062	ENST00000397063		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397062	ENST00000397062		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397062	ENST00000446151		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000397062	ENST00000464747		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-intron	ENST00000397062	ENST00000423513		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000446151	ENST00000397063		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000446151	ENST00000397062		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000446151	ENST00000446151		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000446151	ENST00000464747		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-intron	ENST00000446151	ENST00000423513		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000464747	ENST00000397063		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000464747	ENST00000397062		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000464747	ENST00000446151		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000464747	ENST00000464747		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-intron	ENST00000464747	ENST00000423513		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000423513	ENST00000397063		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000423513	ENST00000397062		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000423513	ENST00000446151		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-3CDS	ENST00000423513	ENST00000464747		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
intron-intron	ENST00000423513	ENST00000423513		ChiTaRS3.1			CA310947	NFE2L2	chr2	178095835	+	NFE2L2	chr2	178095938	-
5CDS-3UTR	ENST00000360909	ENST00000276282		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
5CDS-intron	ENST00000360909	ENST00000520091		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
5CDS-3UTR	ENST00000351081	ENST00000276282		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
5CDS-intron	ENST00000351081	ENST00000520091		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
5CDS-3UTR	ENST00000395125	ENST00000276282		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
5CDS-intron	ENST00000395125	ENST00000520091		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
intron-3UTR	ENST00000556135	ENST00000276282		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
intron-intron	ENST00000556135	ENST00000520091		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
intron-3UTR	ENST00000553966	ENST00000276282		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
intron-intron	ENST00000553966	ENST00000520091		ChiTaRS3.1			CF136777	DAAM1	chr14	59793689	+	MFHAS1	chr8	8643351	-
intron-3CDS	ENST00000216281	ENST00000417172		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000361388		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000422748		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000361675		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000361901		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000393118		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000495522		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000424922		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000216281	ENST00000543443		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-intron	ENST00000216281	ENST00000466704		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000417172		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000361388		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000422748		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000361675		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000361901		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000393118		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000495522		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000424922		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000334701	ENST00000543443		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-intron	ENST00000334701	ENST00000466704		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000417172		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000361388		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000422748		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000361675		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000361901		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000393118		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000495522		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000424922		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000441629	ENST00000543443		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-intron	ENST00000441629	ENST00000466704		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000417172		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000361388		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000422748		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000361675		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000361901		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000393118		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000495522		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000424922		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-3CDS	ENST00000558600	ENST00000543443		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-intron	ENST00000558600	ENST00000466704		ChiTaRS3.1			BU627563	HSP90AA1	chr14	102551702	+	CALD1	chr7	134617970	-
intron-intron	ENST00000590923	ENST00000377452		ChiTaRS3.1			AW998056	AP1M2	chr19	10697982	+	DTD1	chr20	18650681	+
intron-intron	ENST00000590923	ENST00000494921		ChiTaRS3.1			AW998056	AP1M2	chr19	10697982	+	DTD1	chr20	18650681	+
intron-intron	ENST00000250244	ENST00000377452		ChiTaRS3.1			AW998056	AP1M2	chr19	10697982	+	DTD1	chr20	18650681	+
intron-intron	ENST00000250244	ENST00000494921		ChiTaRS3.1			AW998056	AP1M2	chr19	10697982	+	DTD1	chr20	18650681	+
intron-3CDS	ENST00000230461	ENST00000378344		ChiTaRS3.1			DB167187	TMEM30A	chr6	75977396	-	TPRG1L	chr1	3542042	+
intron-3CDS	ENST00000230461	ENST00000344579		ChiTaRS3.1			DB167187	TMEM30A	chr6	75977396	-	TPRG1L	chr1	3542042	+
intron-3CDS	ENST00000370050	ENST00000378344		ChiTaRS3.1			DB167187	TMEM30A	chr6	75977396	-	TPRG1L	chr1	3542042	+
intron-3CDS	ENST00000370050	ENST00000344579		ChiTaRS3.1			DB167187	TMEM30A	chr6	75977396	-	TPRG1L	chr1	3542042	+
intron-3CDS	ENST00000475111	ENST00000378344		ChiTaRS3.1			DB167187	TMEM30A	chr6	75977396	-	TPRG1L	chr1	3542042	+
intron-3CDS	ENST00000475111	ENST00000344579		ChiTaRS3.1			DB167187	TMEM30A	chr6	75977396	-	TPRG1L	chr1	3542042	+
intron-3UTR	ENST00000394936	ENST00000263867		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-3UTR	ENST00000394936	ENST00000409921		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000394936	ENST00000409670		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000394936	ENST00000409724		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000394936	ENST00000483659		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-3UTR	ENST00000394934	ENST00000263867		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-3UTR	ENST00000394934	ENST00000409921		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000394934	ENST00000409670		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000394934	ENST00000409724		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000394934	ENST00000483659		ChiTaRS3.1			BG993981	PSAP	chr10	73576349	-	CAPG	chr2	85621900	+
intron-intron	ENST00000291386	ENST00000375244		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000451343		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000375247		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000479795		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000433037		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000549232		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000383159		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000489006		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000469250		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000440248		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000550212		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000548649		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000424718		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000475986		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000550539		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000471059		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000551808		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000548628		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000549652		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000553092		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000552665		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000465958		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000546684		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000464376		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000552149		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000291386	ENST00000551201		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000375244		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000451343		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000375247		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000479795		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000433037		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000549232		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000383159		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000489006		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000469250		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000440248		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000550212		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000548649		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000424718		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000475986		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000550539		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000471059		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000551808		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000548628		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000549652		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000553092		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000552665		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000465958		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000546684		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000464376		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000552149		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-intron	ENST00000359060	ENST00000551201		ChiTaRS3.1			BI011793	SSU72	chr1	1489266	-	TNXB	chr6	3310731	-
intron-3CDS	ENST00000544564	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000544564	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000544564	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000544564	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000544564	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000544564	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000541571	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000541571	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000541571	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000541571	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000541571	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000541571	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000535424	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000535424	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000535424	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000535424	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000535424	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-intron	ENST00000535424	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000378799	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000378799	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000378799	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000378799	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000378799	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000378799	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
3UTR-3CDS	ENST00000538565	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
3UTR-3CDS	ENST00000538565	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
3UTR-3CDS	ENST00000538565	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
3UTR-intron	ENST00000538565	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
3UTR-intron	ENST00000538565	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
3UTR-intron	ENST00000538565	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000606369	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000606369	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000606369	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000606369	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000606369	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000606369	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000329908	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000329908	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000329908	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000329908	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000329908	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000329908	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000538850	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000538850	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000538850	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000538850	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000538850	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000538850	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000378798	ENST00000531709		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000378798	ENST00000294172		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-3CDS	ENST00000378798	ENST00000532297		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000378798	ENST00000533048		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000378798	ENST00000531131		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
5UTR-intron	ENST00000378798	ENST00000439713		ChiTaRS3.1			DB214465	IST1	chr16	71929492	+	NXF1	chr11	62571453	-
intron-3CDS	ENST00000296474	ENST00000222345		ChiTaRS3.1			BF772180	MST1R	chr3	49924740	-	SIPA1L3	chr19	38655221	+
intron-intron	ENST00000296474	ENST00000476317		ChiTaRS3.1			BF772180	MST1R	chr3	49924740	-	SIPA1L3	chr19	38655221	+
intron-3CDS	ENST00000344206	ENST00000222345		ChiTaRS3.1			BF772180	MST1R	chr3	49924740	-	SIPA1L3	chr19	38655221	+
intron-intron	ENST00000344206	ENST00000476317		ChiTaRS3.1			BF772180	MST1R	chr3	49924740	-	SIPA1L3	chr19	38655221	+
intron-3CDS	ENST00000306869	ENST00000306869		ChiTaRS3.1			BF761196	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-intron	ENST00000306869	ENST00000584318		ChiTaRS3.1			BF761196	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-3CDS	ENST00000584318	ENST00000306869		ChiTaRS3.1			BF761196	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-intron	ENST00000584318	ENST00000584318		ChiTaRS3.1			BF761196	DCXR	chr17	79994617	+	DCXR	chr17	79994131	-
intron-3UTR	ENST00000469379	ENST00000164024		ChiTaRS3.1			BM126864	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000469379	ENST00000544264		ChiTaRS3.1			BM126864	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000331808	ENST00000164024		ChiTaRS3.1			BM126864	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000331808	ENST00000544264		ChiTaRS3.1			BM126864	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000338458	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-3UTR	ENST00000496106	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-3UTR	ENST00000498517	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-3UTR	ENST00000296315	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-3UTR	ENST00000413728	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-3UTR	ENST00000497267	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-3UTR	ENST00000495373	ENST00000534336		ChiTaRS3.1			DW428887	ARHGEF3	chr3	56763215	-	MALAT1	chr11	65267106	+
intron-intron	ENST00000377403	ENST00000544305		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374630		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000400191		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374632		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374627		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000465676		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000544305		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374630		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000400191		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374632		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374627		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000465676		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000544305		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374630		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000400191		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374632		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374627		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000465676		ChiTaRS3.1			BF738618	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-5UTR	ENST00000494188	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000494188	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000494188	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000494188	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000494188	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000494188	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000494188	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409892	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409892	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409892	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409892	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409892	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000409892	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409892	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409784	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409784	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409784	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409784	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409784	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000409784	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409784	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000398529	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000398529	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000398529	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000398529	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000398529	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000398529	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000398529	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409751	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409751	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409751	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409751	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409751	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000409751	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000409751	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000260638	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000260638	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000260638	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000260638	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000260638	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000260638	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000260638	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000356214	ENST00000356842		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000356214	ENST00000359629		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000356214	ENST00000538214		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000356214	ENST00000537768		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000356214	ENST00000335712		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-intron	ENST00000356214	ENST00000477659		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
intron-5UTR	ENST00000356214	ENST00000358510		ChiTaRS3.1			DR001100	RAB1A	chr2	65357120	-	BCL11A	chr2	60780426	-
5CDS-intron	ENST00000457913	ENST00000445552		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000337845		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000329240		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000573185		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000570550		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000336125		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000549904		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000550273		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000549665		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000457913	ENST00000553155		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000445552		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000337845		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000329240		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000573185		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000570550		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000336125		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000549904		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000550273		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000549665		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000277225	ENST00000553155		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000445552		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000337845		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000329240		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000573185		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000570550		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000336125		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000549904		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000550273		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000549665		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000441147	ENST00000553155		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000445552		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000337845		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000329240		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000573185		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000570550		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000336125		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000549904		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000550273		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000549665		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000542028	ENST00000553155		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000445552		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000337845		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000329240		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000573185		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000570550		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000336125		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000549904		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000550273		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000549665		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
3UTR-intron	ENST00000497489	ENST00000553155		ChiTaRS3.1			BQ638444	ZNF462	chr9	109697870	+	ARL17A	chr17	520842	-
5CDS-intron	ENST00000405508	ENST00000406437		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000405508	ENST00000494539		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000405508	ENST00000407122		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000405508	ENST00000401408		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000405508	ENST00000406076		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000262709	ENST00000406437		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000262709	ENST00000494539		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000262709	ENST00000407122		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000262709	ENST00000401408		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000262709	ENST00000406076		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000448790	ENST00000406437		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000448790	ENST00000494539		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000448790	ENST00000407122		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000448790	ENST00000401408		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
5CDS-intron	ENST00000448790	ENST00000406076		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
intron-intron	ENST00000494242	ENST00000406437		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
intron-intron	ENST00000494242	ENST00000494539		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
intron-intron	ENST00000494242	ENST00000407122		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
intron-intron	ENST00000494242	ENST00000401408		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
intron-intron	ENST00000494242	ENST00000406076		ChiTaRS3.1			BG215571	TOX4	chr14	21960794	+	CLHC1	chr2	55453961	-
intron-3CDS	ENST00000421834	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000421834	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000421834	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000421834	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000421834	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370769	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370769	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370769	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370769	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000370769	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000312431	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000312431	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000312431	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000312431	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000312431	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370754	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370754	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370754	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370754	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000370754	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370788	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370788	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370788	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370788	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000370788	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000361203	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000361203	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000361203	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000361203	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000361203	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000244364	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000244364	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000244364	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000244364	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000244364	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000446842	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000446842	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000446842	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000446842	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000446842	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000340834	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000340834	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000340834	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000340834	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000340834	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370765	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370765	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370765	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000370765	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000370765	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000518935	ENST00000307363		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000518935	ENST00000399402		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000518935	ENST00000445488		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3CDS	ENST00000518935	ENST00000307377		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-intron	ENST00000518935	ENST00000497796		ChiTaRS3.1			BF931760	DST	chr6	56323843	-	GLB1	chr3	33095013	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835139	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
Frame-shit	ENST00000322213	ENST00000348405		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000513858		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000395310		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000443462		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000509142		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000326950		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000432794		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000311785		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000448323		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000505472		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000500777		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000508502		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000355196		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000264405		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000505984		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000322213	ENST00000508479		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000322213	ENST00000436790		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000348405		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000513858		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000395310		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000443462		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000509142		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000326950		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000432794		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000311785		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000448323		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000505472		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000500777		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000508502		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000355196		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000264405		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000505984		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-intron	ENST00000469129	ENST00000508479		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-intron	ENST00000469129	ENST00000436790		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000348405		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000513858		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000395310		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000443462		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000509142		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000326950		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000432794		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000311785		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000448323		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000505472		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000500777		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000508502		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000355196		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000264405		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000505984		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000375340	ENST00000508479		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000375340	ENST00000436790		ChiTaRS3.1			DT220653	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000360184	ENST00000360184		ChiTaRS3.1			BF091489	DYNC1H1	chr14	102431226	-	DYNC1H1	chr14	102514865	-
5CDS-intron	ENST00000360184	ENST00000556791		ChiTaRS3.1			BF091489	DYNC1H1	chr14	102431226	-	DYNC1H1	chr14	102514865	-
intron-3CDS	ENST00000556791	ENST00000360184		ChiTaRS3.1			BF091489	DYNC1H1	chr14	102431226	-	DYNC1H1	chr14	102514865	-
intron-intron	ENST00000556791	ENST00000556791		ChiTaRS3.1			BF091489	DYNC1H1	chr14	102431226	-	DYNC1H1	chr14	102514865	-
intron-3UTR	ENST00000469379	ENST00000164024		ChiTaRS3.1			BM126898	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000469379	ENST00000544264		ChiTaRS3.1			BM126898	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000331808	ENST00000164024		ChiTaRS3.1			BM126898	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3UTR	ENST00000331808	ENST00000544264		ChiTaRS3.1			BM126898	DEXI	chr16	11035553	-	CELSR3	chr3	48673991	-
intron-3CDS	ENST00000216146	ENST00000216146		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-5UTR	ENST00000216146	ENST00000465618		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-5UTR	ENST00000216146	ENST00000401609		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-3CDS	ENST00000465618	ENST00000216146		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-5UTR	ENST00000465618	ENST00000465618		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-5UTR	ENST00000465618	ENST00000401609		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-3CDS	ENST00000401609	ENST00000216146		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-5UTR	ENST00000401609	ENST00000465618		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-5UTR	ENST00000401609	ENST00000401609		ChiTaRS3.1			BQ349966	RPL3	chr22	39715630	+	RPL3	chr22	39711466	-
intron-3CDS	ENST00000412585	ENST00000216146		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000412585	ENST00000465618		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000412585	ENST00000401609		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-3CDS	ENST00000425848	ENST00000216146		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000425848	ENST00000465618		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000425848	ENST00000401609		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-3CDS	ENST00000450871	ENST00000216146		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000450871	ENST00000465618		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000450871	ENST00000401609		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-3CDS	ENST00000359635	ENST00000216146		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000359635	ENST00000465618		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000359635	ENST00000401609		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-3CDS	ENST00000435618	ENST00000216146		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000435618	ENST00000465618		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000435618	ENST00000401609		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-3CDS	ENST00000421349	ENST00000216146		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000421349	ENST00000465618		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
intron-5UTR	ENST00000421349	ENST00000401609		ChiTaRS3.1			BQ923637	HLA-B	chr6	2581523	-	RPL3	chr22	39714528	-
Frame-shit	ENST00000323848	ENST00000396821		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-intron	ENST00000323848	ENST00000444597		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-intron	ENST00000323848	ENST00000381633		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-5UTR	ENST00000323848	ENST00000432525		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
Frame-shit	ENST00000447431	ENST00000396821		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-intron	ENST00000447431	ENST00000444597		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-intron	ENST00000447431	ENST00000381633		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-5UTR	ENST00000447431	ENST00000432525		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
Frame-shit	ENST00000374389	ENST00000396821		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-intron	ENST00000374389	ENST00000444597		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-intron	ENST00000374389	ENST00000381633		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
5CDS-5UTR	ENST00000374389	ENST00000432525		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
3UTR-3CDS	ENST00000479034	ENST00000396821		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
3UTR-intron	ENST00000479034	ENST00000444597		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
3UTR-intron	ENST00000479034	ENST00000381633		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
3UTR-5UTR	ENST00000479034	ENST00000432525		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
intron-3CDS	ENST00000537199	ENST00000396821		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
intron-intron	ENST00000537199	ENST00000444597		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
intron-intron	ENST00000537199	ENST00000381633		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
intron-5UTR	ENST00000537199	ENST00000432525		ChiTaRS3.1			AW205256	SRRM1	chr1	24973219	-	DDX17	chr22	38894534	+
intron-3CDS	ENST00000394071	ENST00000394071		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-3CDS	ENST00000394071	ENST00000286523		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-intron	ENST00000394071	ENST00000486739		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-3CDS	ENST00000286523	ENST00000394071		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-3CDS	ENST00000286523	ENST00000286523		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-intron	ENST00000286523	ENST00000486739		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-3CDS	ENST00000486739	ENST00000394071		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-3CDS	ENST00000486739	ENST00000286523		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-intron	ENST00000486739	ENST00000486739		ChiTaRS3.1			CN425349	ELMSAN1	chr14	74203908	+	ELMSAN1	chr14	74205340	-
intron-3CDS	ENST00000396353	ENST00000356396		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396353	ENST00000397728		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396353	ENST00000457828		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396353	ENST00000522411		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-5UTR	ENST00000396353	ENST00000464357		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396355	ENST00000356396		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396355	ENST00000397728		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396355	ENST00000457828		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396355	ENST00000522411		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-5UTR	ENST00000396355	ENST00000464357		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396354	ENST00000356396		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396354	ENST00000397728		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396354	ENST00000457828		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000396354	ENST00000522411		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-5UTR	ENST00000396354	ENST00000464357		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000342673	ENST00000356396		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000342673	ENST00000397728		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000342673	ENST00000457828		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000342673	ENST00000522411		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-5UTR	ENST00000342673	ENST00000464357		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000571896	ENST00000356396		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000571896	ENST00000397728		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000571896	ENST00000457828		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-3CDS	ENST00000571896	ENST00000522411		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
intron-5UTR	ENST00000571896	ENST00000464357		ChiTaRS3.1			BE827726	NDE1	chr16	15812243	-	LSS	chr21	47636327	-
Frame-shit	ENST00000353801	ENST00000342382		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000353801	ENST00000303525		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000353801	ENST00000382021		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
5CDS-intron	ENST00000353801	ENST00000512136		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000371646	ENST00000342382		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000371646	ENST00000303525		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000371646	ENST00000382021		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
5CDS-intron	ENST00000371646	ENST00000512136		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000371554	ENST00000342382		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000371554	ENST00000303525		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
Frame-shit	ENST00000371554	ENST00000382021		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
5CDS-intron	ENST00000371554	ENST00000512136		ChiTaRS3.1			BM750525	HSP90AB1	chr6	44218221	+	DNAJC21	chr5	34939013	+
5CDS-3UTR	ENST00000268171	ENST00000394906		ChiTaRS3.1			CK822852	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
5CDS-3UTR	ENST00000268171	ENST00000394908		ChiTaRS3.1			CK822852	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
5CDS-3UTR	ENST00000268171	ENST00000585169		ChiTaRS3.1			CK822852	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
5CDS-5UTR	ENST00000268171	ENST00000577789		ChiTaRS3.1			CK822852	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
intron-intron	ENST00000307145	ENST00000369219		ChiTaRS3.1			BE144868	KLF13	chr15	31657395	-	NBPF14	chr1	144995977	+
intron-intron	ENST00000560473	ENST00000369219		ChiTaRS3.1			BE144868	KLF13	chr15	31657395	-	NBPF14	chr1	144995977	+
intron-intron	ENST00000500533	ENST00000369219		ChiTaRS3.1			BE144868	KLF13	chr15	31657395	-	NBPF14	chr1	144995977	+
intron-intron	ENST00000378538	ENST00000378538		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000378538	ENST00000227163		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000378538	ENST00000533030		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000378538	ENST00000533968		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000227163	ENST00000378538		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000227163	ENST00000227163		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000227163	ENST00000533030		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000227163	ENST00000533968		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533030	ENST00000378538		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533030	ENST00000227163		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533030	ENST00000533030		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533030	ENST00000533968		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533968	ENST00000378538		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533968	ENST00000227163		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533968	ENST00000533030		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000533968	ENST00000533968		ChiTaRS3.1			BI004219	SPI1	chr11	47378653	-	SPI1	chr11	47382776	-
intron-intron	ENST00000373644	ENST00000534358		ChiTaRS3.1			FM165190	TET1	chr10	70449336	+	KMT2A	chr11	118352127	+
intron-intron	ENST00000373644	ENST00000389506		ChiTaRS3.1			FM165190	TET1	chr10	70449336	+	KMT2A	chr11	118352127	+
intron-intron	ENST00000373644	ENST00000354520		ChiTaRS3.1			FM165190	TET1	chr10	70449336	+	KMT2A	chr11	118352127	+
intron-intron	ENST00000373644	ENST00000420751		ChiTaRS3.1			FM165190	TET1	chr10	70449336	+	KMT2A	chr11	118352127	+
intron-intron	ENST00000304880	ENST00000453848		ChiTaRS3.1			BF326121	OR1N1	chr9	125288822	+	TMEM132A	chr11	60701345	+
intron-intron	ENST00000304880	ENST00000005286		ChiTaRS3.1			BF326121	OR1N1	chr9	125288822	+	TMEM132A	chr11	60701345	+
intron-intron	ENST00000304880	ENST00000543732		ChiTaRS3.1			BF326121	OR1N1	chr9	125288822	+	TMEM132A	chr11	60701345	+
intron-intron	ENST00000344691	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000344691	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000344691	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000344691	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000344691	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000325074	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000325074	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000325074	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000325074	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000325074	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000437180	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000437180	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000437180	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000437180	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000437180	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000300305	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000300305	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000300305	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000300305	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000300305	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000399240	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000399240	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000399240	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000399240	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000399240	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000486278	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000486278	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000486278	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000486278	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000486278	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000494829	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000494829	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000494829	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000494829	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000494829	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000358356	ENST00000515059		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000358356	ENST00000440890		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000358356	ENST00000264568		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000358356	ENST00000394931		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-intron	ENST00000358356	ENST00000502683		ChiTaRS3.1			DQ207770	RUNX1	chr21	36285941	-	BMPR1B	chr4	95732914	+
intron-3CDS	ENST00000301785	ENST00000544907		ChiTaRS3.1			AI570637	HNRNPUL2	chr11	62482282	+	TNFAIP1	chr17	26669308	-
intron-3CDS	ENST00000301785	ENST00000226225		ChiTaRS3.1			AI570637	HNRNPUL2	chr11	62482282	+	TNFAIP1	chr17	26669308	-
intron-3UTR	ENST00000301785	ENST00000583213		ChiTaRS3.1			AI570637	HNRNPUL2	chr11	62482282	+	TNFAIP1	chr17	26669308	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU236680	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU236680	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU236680	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU236680	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000399951	ENST00000399951		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-3CDS	ENST00000399951	ENST00000399953		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-5UTR	ENST00000399951	ENST00000405960		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-3CDS	ENST00000399953	ENST00000399951		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-3CDS	ENST00000399953	ENST00000399953		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-5UTR	ENST00000399953	ENST00000405960		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-3CDS	ENST00000405960	ENST00000399951		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-3CDS	ENST00000405960	ENST00000399953		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-5UTR	ENST00000405960	ENST00000405960		ChiTaRS3.1			EL583346	NPRL3	chr16	143291	+	NPRL3	chr16	139827	-
intron-3CDS	ENST00000399537	ENST00000265846		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000399537	ENST00000449296		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000399537	ENST00000539900		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-5UTR	ENST00000399537	ENST00000463358		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000430969	ENST00000265846		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000430969	ENST00000449296		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000430969	ENST00000539900		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-5UTR	ENST00000430969	ENST00000463358		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000399434	ENST00000265846		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000399434	ENST00000449296		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-3CDS	ENST00000399434	ENST00000539900		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
intron-5UTR	ENST00000399434	ENST00000463358		ChiTaRS3.1			DA282536	TNRC18	chr7	5464284	+	ADAP1	chr7	959688	-
3UTR-3CDS	ENST00000373960	ENST00000225655		ChiTaRS3.1			AA243735	DES	chr2	220291320	+	PFN1	chr17	4850106	-
3UTR-3CDS	ENST00000373960	ENST00000574872		ChiTaRS3.1			AA243735	DES	chr2	220291320	+	PFN1	chr17	4850106	-
In-frame	ENST00000378641	ENST00000575301		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
5CDS-intron	ENST00000378641	ENST00000572893		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
5CDS-intron	ENST00000378641	ENST00000302926		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
In-frame	ENST00000338037	ENST00000575301		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
5CDS-intron	ENST00000338037	ENST00000572893		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
5CDS-intron	ENST00000338037	ENST00000302926		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
In-frame	ENST00000378637	ENST00000575301		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
5CDS-intron	ENST00000378637	ENST00000572893		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
5CDS-intron	ENST00000378637	ENST00000302926		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
intron-3CDS	ENST00000494924	ENST00000575301		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
intron-intron	ENST00000494924	ENST00000572893		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
intron-intron	ENST00000494924	ENST00000302926		ChiTaRS3.1			AA984410	PLCB1	chr20	8630065	-	NLGN2	chr17	7320966	+
intron-3CDS	ENST00000233616	ENST00000233616		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000233616	ENST00000452063		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3UTR	ENST00000233616	ENST00000409065		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000233616	ENST00000462443		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000233616	ENST00000535045		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000452063	ENST00000233616		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000452063	ENST00000452063		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3UTR	ENST00000452063	ENST00000409065		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000452063	ENST00000462443		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000452063	ENST00000535045		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000409065	ENST00000233616		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000409065	ENST00000452063		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3UTR	ENST00000409065	ENST00000409065		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000409065	ENST00000462443		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000409065	ENST00000535045		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000462443	ENST00000233616		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000462443	ENST00000452063		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3UTR	ENST00000462443	ENST00000409065		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000462443	ENST00000462443		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000462443	ENST00000535045		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000535045	ENST00000233616		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000535045	ENST00000452063		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3UTR	ENST00000535045	ENST00000409065		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000535045	ENST00000462443		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-intron	ENST00000535045	ENST00000535045		ChiTaRS3.1			BG979303	MOGS	chr2	74689596	+	MOGS	chr2	74688425	+
intron-3CDS	ENST00000376637	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000400895	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000491346	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000376629	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000376627	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000314340	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000452018	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
intron-3CDS	ENST00000510878	ENST00000262455		ChiTaRS3.1			CB163938	AGTRAP	chr1	11806883	-	ERP44	chr9	102778671	-
In-frame	ENST00000250092	ENST00000250092		ChiTaRS3.1			AW947262	CD68	chr17	7484073	+	CD68	chr17	7483392	-
In-frame	ENST00000250092	ENST00000380498		ChiTaRS3.1			AW947262	CD68	chr17	7484073	+	CD68	chr17	7483392	-
In-frame	ENST00000380498	ENST00000250092		ChiTaRS3.1			AW947262	CD68	chr17	7484073	+	CD68	chr17	7483392	-
In-frame	ENST00000380498	ENST00000380498		ChiTaRS3.1			AW947262	CD68	chr17	7484073	+	CD68	chr17	7483392	-
5UTR-3CDS	ENST00000397493	ENST00000248975		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000397493	ENST00000397492		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3UTR	ENST00000397493	ENST00000471374		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000327423	ENST00000248975		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000327423	ENST00000397492		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3UTR	ENST00000327423	ENST00000471374		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000434485	ENST00000248975		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000434485	ENST00000397492		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3UTR	ENST00000434485	ENST00000471374		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000461722	ENST00000248975		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3CDS	ENST00000461722	ENST00000397492		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
5UTR-3UTR	ENST00000461722	ENST00000471374		ChiTaRS3.1			CB112861	PRR14L	chr22	32145977	-	YWHAH	chr22	32352125	+
intron-3CDS	ENST00000262487	ENST00000375990		ChiTaRS3.1			BE930748	ISM1	chr20	13275932	+	UGGT1	chr2	128944349	-
intron-3CDS	ENST00000262487	ENST00000259253		ChiTaRS3.1			BE930748	ISM1	chr20	13275932	+	UGGT1	chr2	128944349	-
intron-intron	ENST00000262487	ENST00000465836		ChiTaRS3.1			BE930748	ISM1	chr20	13275932	+	UGGT1	chr2	128944349	-
intron-3CDS	ENST00000485577	ENST00000246548		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000485577	ENST00000439527		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000485577	ENST00000592791		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000485577	ENST00000588585		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000393313	ENST00000246548		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000393313	ENST00000439527		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000393313	ENST00000592791		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000393313	ENST00000588585		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000265827	ENST00000246548		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000265827	ENST00000439527		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000265827	ENST00000592791		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000265827	ENST00000588585		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000393312	ENST00000246548		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3CDS	ENST00000393312	ENST00000439527		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000393312	ENST00000592791		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-intron	ENST00000393312	ENST00000588585		ChiTaRS3.1			DA140191	ZNF800	chr7	127013848	-	UBA2	chr19	34945360	+
intron-3UTR	ENST00000298834	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000298834	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000298834	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000298834	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000426438	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000426438	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000426438	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000426438	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000314845	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000314845	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000314845	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000314845	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000533727	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000533727	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000533727	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000533727	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000534300	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000534300	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000534300	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000534300	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000458649	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000458649	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000458649	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000458649	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000528950	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000528950	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000528950	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000528950	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000529963	ENST00000402714		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000529963	ENST00000544450		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-3UTR	ENST00000529963	ENST00000392920		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000529963	ENST00000555048		ChiTaRS3.1			CA336277	AMBRA1	chr11	46450222	-	EVL	chr14	100610523	+
intron-intron	ENST00000356239	ENST00000356239		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000358100		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000359028		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000394564		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000356239		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000358100		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000359028		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000394564		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000356239		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000358100		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000359028		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000394564		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000356239		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000358100		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000359028		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000394564		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000356239		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000358100		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000359028		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000394564		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BM930492	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BF370041	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582408	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-3CDS	ENST00000419152	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000419152	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000532400	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532400	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000532741	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000532741	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000317198	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000317198	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000526838	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000526838	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000442189	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000442189	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000528610	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000528610	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000423316	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000423316	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000395119	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000395119	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000529272	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000529272	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000531621	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531621	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000524624	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000524624	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000531770	ENST00000419152		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000532400		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000532741		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000317198		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000526838		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000442189		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000528610		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000423316		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000395119		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000529272		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000531621		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000524624		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-intron	ENST00000531770	ENST00000531770		ChiTaRS3.1			BG955510	EEF1D	chr8	144663465	+	EEF1D	chr8	144663499	-
intron-3CDS	ENST00000263383	ENST00000263383		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-3CDS	ENST00000263383	ENST00000534378		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-intron	ENST00000263383	ENST00000531635		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-3CDS	ENST00000534378	ENST00000263383		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-3CDS	ENST00000534378	ENST00000534378		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-intron	ENST00000534378	ENST00000531635		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-3CDS	ENST00000531635	ENST00000263383		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-3CDS	ENST00000531635	ENST00000534378		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-intron	ENST00000531635	ENST00000531635		ChiTaRS3.1			BF763942	ILVBL	chr19	15230002	-	ILVBL	chr19	15227286	+
intron-intron	ENST00000392951	ENST00000463441		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
intron-3UTR	ENST00000392951	ENST00000323078		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
intron-3UTR	ENST00000392951	ENST00000359623		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
intron-intron	ENST00000392951	ENST00000493307		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000530649	ENST00000463441		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000530649	ENST00000323078		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000530649	ENST00000359623		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000530649	ENST00000493307		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000532870	ENST00000463441		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000532870	ENST00000323078		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-3UTR	ENST00000532870	ENST00000359623		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
3UTR-intron	ENST00000532870	ENST00000493307		ChiTaRS3.1			AA468630	TAGLN	chr11	117075434	-	LRRC61	chr7	150034797	-
5CDS-intron	ENST00000374550	ENST00000452825		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
5CDS-intron	ENST00000374550	ENST00000375401		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
5CDS-intron	ENST00000374550	ENST00000404049		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
5CDS-intron	ENST00000374550	ENST00000375379		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
5CDS-intron	ENST00000374550	ENST00000375383		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
5CDS-intron	ENST00000374550	ENST00000465402		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
3UTR-intron	ENST00000482370	ENST00000452825		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
3UTR-intron	ENST00000482370	ENST00000375401		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
3UTR-intron	ENST00000482370	ENST00000404049		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
3UTR-intron	ENST00000482370	ENST00000375379		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
3UTR-intron	ENST00000482370	ENST00000375383		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
3UTR-intron	ENST00000482370	ENST00000465402		ChiTaRS3.1			AA447363	RPL11	chr1	24022300	-	KDM5C	chrX	53222271	+
intron-intron	ENST00000361568	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000361568	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000361568	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000395523	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000395523	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000324816	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000324816	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000445576	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445576	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000437001	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000437001	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000375137	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375137	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000375143	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000375143	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000493548	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000493548	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000412651	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000412651	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000457509	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000457509	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000550796	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550796	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000547565	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547565	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000440533	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440533	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000445462	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000445462	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000486923	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000486923	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000550232	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000550232	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000383152	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383152	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000399665	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399665	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000547646	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547646	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000551703	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551703	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000399662	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399662	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000399660	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399660	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000480985	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000480985	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000467040	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000467040	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000487203	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000487203	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000423347	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000423347	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000440507	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000440507	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000551222	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000551222	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000548089	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000548089	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000424353	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000424353	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000452304	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452304	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000459936	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000459936	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000549741	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549741	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000383301	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000383301	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000399860	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399860	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000546871	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000546871	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000399859	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399859	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000399856	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000399856	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000414356	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000414356	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000452562	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000452562	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000552922	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552922	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000549544	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000549544	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000420778	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000420778	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000427556	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000427556	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000483049	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000483049	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000547891	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547891	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000525601	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000525601	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000547508	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547508	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000422988	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000422988	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000547309	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547309	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000552076	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000552076	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-3UTR	ENST00000465052	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
3UTR-intron	ENST00000465052	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000438385	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000438385	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000456497	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000456497	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000361568		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000395523		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000324816		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000445576		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000437001		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000375137		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000375143		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000493548		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000412651		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000457509		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000550796		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000547565		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000440533		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000445462		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000486923		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000550232		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000383152		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000399665		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000547646		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000551703		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000399662		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000399660		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000480985		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000467040		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000487203		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000423347		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000440507		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000551222		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000548089		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000424353		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000452304		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000459936		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000549741		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000383301		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000399860		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000546871		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000399859		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000399856		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000414356		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000452562		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000552922		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000549544		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000420778		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000427556		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000483049		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000547891		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000525601		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000547508		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000422988		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000547309		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000552076		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-3UTR	ENST00000547558	ENST00000465052		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000438385		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000456497		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000547558	ENST00000547558		ChiTaRS3.1			BI011292	PPT2	chr6	3481868	-	PPT2	chr6	3481986	+
intron-intron	ENST00000396402	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396402	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396402	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396402	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396402	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396402	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396402	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000260433	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000396404	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000559878	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000405913	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000557858	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000368445		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000368449		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000448116		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000368450		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000368453		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000606391		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
intron-intron	ENST00000492852	ENST00000490667		ChiTaRS3.1			BF992585	CYP19A1	chr15	51594985	+	SHC1	chr1	154945128	-
3UTR-3UTR	ENST00000318561	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000318561	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000318561	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000318561	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000318561	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000318561	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000318561	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000521315	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000521315	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000521315	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000521315	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000521315	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000521315	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000521315	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000437090	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000437090	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000437090	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000437090	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000437090	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000437090	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000437090	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-3UTR	ENST00000520605	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-3UTR	ENST00000520605	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-intron	ENST00000520605	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-intron	ENST00000520605	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-intron	ENST00000520605	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-3UTR	ENST00000520605	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
5CDS-intron	ENST00000520605	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000522109	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000522109	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522109	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522109	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522109	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000522109	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522109	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000524255	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000524255	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000524255	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000524255	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000524255	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-3UTR	ENST00000524255	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
3UTR-intron	ENST00000524255	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000522880	ENST00000318561		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000522880	ENST00000521315		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522880	ENST00000437090		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522880	ENST00000520605		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522880	ENST00000522109		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3UTR	ENST00000522880	ENST00000524255		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-intron	ENST00000522880	ENST00000522880		ChiTaRS3.1			BQ016733	SFTPC	chr8	22021876	-	SFTPC	chr8	22021792	+
intron-3CDS	ENST00000348956	ENST00000348956		ChiTaRS3.1			BQ320618	CKB	chr14	103986637	-	CKB	chr14	103986507	+
intron-intron	ENST00000357575	ENST00000357575		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000357575	ENST00000397778		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000357575	ENST00000409073		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000357575	ENST00000590381		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000357575	ENST00000590895		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000357575		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000397778		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000409073		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000590381		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000397778	ENST00000590895		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000357575		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000397778		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000409073		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000590381		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000409073	ENST00000590895		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000357575		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000397778		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000409073		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000590381		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000590381	ENST00000590895		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000357575		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000397778		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000409073		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000590381		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000590895	ENST00000590895		ChiTaRS3.1			BF932048	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-3CDS	ENST00000381196	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000381196	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000381196	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000381196	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000381196	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000381196	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000360074	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000360074	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000360074	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000360074	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000360074	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000360074	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000537002	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000537002	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000537002	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000537002	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000537002	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000537002	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397617	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397617	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397617	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000397617	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000397617	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000397617	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000358503	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000358503	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000358503	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000358503	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000358503	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000358503	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397611	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397611	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397611	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000397611	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000397611	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000397611	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000355233	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000355233	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000355233	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000355233	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000355233	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000355233	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000356435	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000356435	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000356435	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000356435	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000356435	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000356435	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000540109	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000540109	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000540109	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000540109	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000540109	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000540109	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000486161	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000486161	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000486161	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000486161	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000486161	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000486161	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397606	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397606	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000397606	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000397606	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000397606	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000397606	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
5UTR-3CDS	ENST00000463477	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
5UTR-3CDS	ENST00000463477	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
5UTR-3CDS	ENST00000463477	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
5UTR-5UTR	ENST00000463477	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
5UTR-intron	ENST00000463477	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
5UTR-intron	ENST00000463477	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000471274	ENST00000253363		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000471274	ENST00000361162		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000471274	ENST00000528062		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-5UTR	ENST00000471274	ENST00000407261		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000471274	ENST00000397370		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-intron	ENST00000471274	ENST00000463098		ChiTaRS3.1			DC352594	PTPRD	chr9	10340963	-	RBM39	chr20	34317287	-
intron-3CDS	ENST00000598810	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000598810	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000598810	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000593945	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000593945	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000593945	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000601519	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000601519	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000601519	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000311227	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000311227	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000311227	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000377214	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000377214	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000377214	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000539846	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000539846	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000539846	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000598397	ENST00000225992		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000598397	ENST00000591228		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3CDS	ENST00000598397	ENST00000587006		ChiTaRS3.1			BP394212	TEAD2	chr19	49844436	+	PPY	chr17	42018566	-
intron-3UTR	ENST00000283357	ENST00000534336		ChiTaRS3.1			GW493199	FAM81B	chr5	94759252	-	MALAT1	chr11	65267263	-
intron-3UTR	ENST00000506418	ENST00000534336		ChiTaRS3.1			GW493199	FAM81B	chr5	94759252	-	MALAT1	chr11	65267263	-
3UTR-3CDS	ENST00000294244	ENST00000294244		ChiTaRS3.1			BQ025897	C11orf84	chr11	63595097	-	C11orf84	chr11	63585486	+
intron-3CDS	ENST00000270459	ENST00000261534		ChiTaRS3.1			BF871707	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000270459	ENST00000556880		ChiTaRS3.1			BF871707	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-3CDS	ENST00000587279	ENST00000261534		ChiTaRS3.1			BF871707	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000587279	ENST00000556880		ChiTaRS3.1			BF871707	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000393249	ENST00000371996		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393249	ENST00000371994		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393249	ENST00000536010		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393249	ENST00000472891		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000261183	ENST00000371996		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000261183	ENST00000371994		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000261183	ENST00000536010		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000261183	ENST00000472891		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393250	ENST00000371996		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393250	ENST00000371994		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393250	ENST00000536010		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000393250	ENST00000472891		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000552178	ENST00000371996		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000552178	ENST00000371994		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000552178	ENST00000536010		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-intron	ENST00000552178	ENST00000472891		ChiTaRS3.1			AW946996	OSBPL8	chr12	76769091	+	MINPP1	chr10	89294320	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835153	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000425967	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000425967	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000425967	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000425967	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000425967	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397091	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397091	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397091	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397091	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397091	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000447712	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000447712	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000447712	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000447712	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000447712	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000341462	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000341462	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000341462	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000341462	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000341462	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000532791	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000532791	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000532791	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000532791	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000532791	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397113	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397113	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397113	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397113	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397113	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000356207	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000356207	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000356207	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000356207	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000356207	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000335922	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000335922	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000335922	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000335922	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000335922	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000326324	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000326324	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000326324	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000326324	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000326324	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397103	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397103	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397103	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397103	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397103	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397108	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397108	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397108	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000397108	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000397108	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000496629	ENST00000541222		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000496629	ENST00000316856		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000496629	ENST00000586534		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3UTR	ENST00000496629	ENST00000592268		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-intron	ENST00000496629	ENST00000588826		ChiTaRS3.1			CN276696	FGFR1	chr8	38270911	-	RAD23A	chr19	13064388	+
intron-3CDS	ENST00000239926	ENST00000377387		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000239926	ENST00000377390		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000239926	ENST00000377394		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000239926	ENST00000227503		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000239926	ENST00000334944		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000239926	ENST00000422298		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000239926	ENST00000433274		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-intron	ENST00000239926	ENST00000489544		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000377387		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000377390		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000377394		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000227503		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000334944		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000422298		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000421631	ENST00000433274		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-intron	ENST00000421631	ENST00000489544		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000377387		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000377390		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000377394		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000227503		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000334944		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000422298		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000509812	ENST00000433274		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-intron	ENST00000509812	ENST00000489544		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000377387		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000377390		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000377394		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000227503		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000334944		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000422298		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-3CDS	ENST00000515645	ENST00000433274		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
intron-intron	ENST00000515645	ENST00000489544		ChiTaRS3.1			CN287481	MYOT	chr5	137088956	-	SF1	chr11	64534511	-
5CDS-5UTR	ENST00000244745	ENST00000244745		ChiTaRS3.1			AI942449	SOX4	chr6	21595055	+	SOX4	chr6	21594026	+
5CDS-intron	ENST00000244745	ENST00000543472		ChiTaRS3.1			AI942449	SOX4	chr6	21595055	+	SOX4	chr6	21594026	+
5CDS-5UTR	ENST00000543472	ENST00000244745		ChiTaRS3.1			AI942449	SOX4	chr6	21595055	+	SOX4	chr6	21594026	+
5CDS-intron	ENST00000543472	ENST00000543472		ChiTaRS3.1			AI942449	SOX4	chr6	21595055	+	SOX4	chr6	21594026	+
intron-5UTR	ENST00000337910	ENST00000412849		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000337910	ENST00000401392		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000337910	ENST00000264159		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000337910	ENST00000536680		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000357917	ENST00000412849		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000357917	ENST00000401392		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000357917	ENST00000264159		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000357917	ENST00000536680		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000490827	ENST00000412849		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000490827	ENST00000401392		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000490827	ENST00000264159		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-5UTR	ENST00000490827	ENST00000536680		ChiTaRS3.1			BF377908	RHOBTB1	chr10	62756118	-	ZRANB3	chr2	135965017	+
intron-3CDS	ENST00000314797	ENST00000546373		ChiTaRS3.1			AW889773	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-3CDS	ENST00000314797	ENST00000551568		ChiTaRS3.1			AW889773	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-3CDS	ENST00000314797	ENST00000338356		ChiTaRS3.1			AW889773	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-intron	ENST00000314797	ENST00000549691		ChiTaRS3.1			AW889773	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-3CDS	ENST00000241052	ENST00000440884		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000416682		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000429436		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000303622		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000216288		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000553942		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000335102		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000241052	ENST00000561071		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000440884		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000416682		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000429436		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000303622		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000216288		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000553942		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000335102		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000534710	ENST00000561071		ChiTaRS3.1			BI028162	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000544440	ENST00000423729		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000544440	ENST00000331662		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000407578	ENST00000423729		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000407578	ENST00000331662		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000357337	ENST00000423729		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000357337	ENST00000331662		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000360084	ENST00000423729		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000360084	ENST00000331662		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000482517	ENST00000423729		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
intron-3UTR	ENST00000482517	ENST00000331662		ChiTaRS3.1			BQ948308	MYCBP2	chr13	77858502	-	NAT8L	chr4	2070754	+
5CDS-3UTR	ENST00000321562	ENST00000321562		ChiTaRS3.1			BE938548	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
5CDS-3UTR	ENST00000321562	ENST00000544340		ChiTaRS3.1			BE938548	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
5CDS-3UTR	ENST00000544340	ENST00000321562		ChiTaRS3.1			BE938548	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
5CDS-3UTR	ENST00000544340	ENST00000544340		ChiTaRS3.1			BE938548	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
intron-intron	ENST00000583610	ENST00000583610		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000583610	ENST00000394294		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000583610	ENST00000264658		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000583610	ENST00000577399		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000394294	ENST00000583610		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000394294	ENST00000394294		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000394294	ENST00000264658		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000394294	ENST00000577399		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000264658	ENST00000583610		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000264658	ENST00000394294		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000264658	ENST00000264658		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000264658	ENST00000577399		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000577399	ENST00000583610		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000577399	ENST00000394294		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000577399	ENST00000264658		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-intron	ENST00000577399	ENST00000577399		ChiTaRS3.1			BE939522	FBXL20	chr17	37416468	+	FBXL20	chr17	37416347	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766239	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766239	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
In-frame	ENST00000268482	ENST00000268482		ChiTaRS3.1			BF895636	DHX38	chr16	72144926	-	DHX38	chr16	72146382	+
In-frame	ENST00000268482	ENST00000536867		ChiTaRS3.1			BF895636	DHX38	chr16	72144926	-	DHX38	chr16	72146382	+
In-frame	ENST00000536867	ENST00000268482		ChiTaRS3.1			BF895636	DHX38	chr16	72144926	-	DHX38	chr16	72146382	+
In-frame	ENST00000536867	ENST00000536867		ChiTaRS3.1			BF895636	DHX38	chr16	72144926	-	DHX38	chr16	72146382	+
Frame-shit	ENST00000307122	ENST00000209718		ChiTaRS3.1			BE185492	SPRR1A	chr1	152957881	-	KRT23	chr17	39084596	+
Frame-shit	ENST00000307122	ENST00000436344		ChiTaRS3.1			BE185492	SPRR1A	chr1	152957881	-	KRT23	chr17	39084596	+
5CDS-intron	ENST00000307122	ENST00000582283		ChiTaRS3.1			BE185492	SPRR1A	chr1	152957881	-	KRT23	chr17	39084596	+
In-frame	ENST00000368762	ENST00000209718		ChiTaRS3.1			BE185492	SPRR1A	chr1	152957881	-	KRT23	chr17	39084596	+
In-frame	ENST00000368762	ENST00000436344		ChiTaRS3.1			BE185492	SPRR1A	chr1	152957881	-	KRT23	chr17	39084596	+
5CDS-intron	ENST00000368762	ENST00000582283		ChiTaRS3.1			BE185492	SPRR1A	chr1	152957881	-	KRT23	chr17	39084596	+
In-frame	ENST00000534358	ENST00000252674		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
5CDS-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
In-frame	ENST00000389506	ENST00000252674		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
5CDS-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
In-frame	ENST00000354520	ENST00000252674		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
5CDS-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
3UTR-3CDS	ENST00000420751	ENST00000252674		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
3UTR-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AY040555	KMT2A	chr11	118355030	+	MLLT1	chr19	6230726	-
3UTR-3CDS	ENST00000308964	ENST00000308964		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000308964	ENST00000586790		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000308964	ENST00000591578		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000308964	ENST00000588740		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000308964	ENST00000591241		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000586790	ENST00000308964		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000586790	ENST00000586790		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000586790	ENST00000591578		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000586790	ENST00000588740		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000586790	ENST00000591241		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591578	ENST00000308964		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591578	ENST00000586790		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591578	ENST00000591578		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591578	ENST00000588740		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591578	ENST00000591241		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000588740	ENST00000308964		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000588740	ENST00000586790		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000588740	ENST00000591578		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000588740	ENST00000588740		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000588740	ENST00000591241		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591241	ENST00000308964		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591241	ENST00000586790		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591241	ENST00000591578		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591241	ENST00000588740		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
3UTR-3CDS	ENST00000591241	ENST00000591241		ChiTaRS3.1			BQ640263	CCDC106	chr19	56164169	+	CCDC106	chr19	56162683	+
intron-intron	ENST00000462833	ENST00000312233		ChiTaRS3.1			BI037157	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
intron-intron	ENST00000491190	ENST00000312233		ChiTaRS3.1			BI037157	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
intron-intron	ENST00000309879	ENST00000312233		ChiTaRS3.1			BI037157	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
intron-intron	ENST00000470367	ENST00000312233		ChiTaRS3.1			BI037157	ADCY5	chr3	123001452	+	GLIS1	chr1	53979559	+
Frame-shit	ENST00000324856	ENST00000324856		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
5CDS-intron	ENST00000324856	ENST00000457599		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
5CDS-intron	ENST00000324856	ENST00000374152		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
5CDS-intron	ENST00000324856	ENST00000540690		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-3CDS	ENST00000457599	ENST00000324856		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000457599	ENST00000457599		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000457599	ENST00000374152		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000457599	ENST00000540690		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
Frame-shit	ENST00000374152	ENST00000324856		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
5CDS-intron	ENST00000374152	ENST00000457599		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
5CDS-intron	ENST00000374152	ENST00000374152		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
5CDS-intron	ENST00000374152	ENST00000540690		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-3CDS	ENST00000540690	ENST00000324856		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000540690	ENST00000457599		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000540690	ENST00000374152		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000540690	ENST00000540690		ChiTaRS3.1			BF990251	ARID1A	chr1	27101155	-	ARID1A	chr1	27101280	+
intron-intron	ENST00000328299	ENST00000392476		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000430767		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000564509		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000585618		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000413679		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000436233		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000443798		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000591437		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000328299	ENST00000431431		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000392476		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000430767		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000564509		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000585618		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000413679		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000436233		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000443798		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000591437		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
intron-intron	ENST00000464140	ENST00000431431		ChiTaRS3.1			BF093713	ST6GALNAC3	chr1	76907458	+	SEC14L1	chr17	75202992	-
5CDS-intron	ENST00000395135	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000395135	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000395135	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000395135	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000395135	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000395135	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000395132	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000395132	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000395132	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000395132	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000395132	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000395132	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268059	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268059	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268059	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268059	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268059	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268059	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000354026	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000354026	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000354026	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000354026	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000354026	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000354026	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268058	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268058	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268058	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268058	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268058	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000268058	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000565898	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000565898	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000565898	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000565898	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000565898	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000565898	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569477	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569477	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569477	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569477	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569477	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569477	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569965	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569965	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569965	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569965	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569965	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000569965	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000567543	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000567543	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000567543	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000567543	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000567543	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000567543	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000435786	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000435786	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000435786	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000435786	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000435786	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000435786	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000436891	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000436891	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000436891	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000436891	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000436891	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000436891	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000564428	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000564428	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000564428	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000564428	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000564428	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000564428	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000359928	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000359928	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000359928	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000359928	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000359928	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000359928	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000563500	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000563500	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000563500	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000563500	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000563500	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
5CDS-intron	ENST00000563500	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000569161	ENST00000254066		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000569161	ENST00000394089		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000569161	ENST00000425707		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000569161	ENST00000394086		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000569161	ENST00000394081		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
intron-intron	ENST00000569161	ENST00000420042		ChiTaRS3.1			AJ417079	PML	chr15	74325616	+	RARA	chr17	38499056	+
In-frame	ENST00000374550	ENST00000394671		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
Frame-shit	ENST00000374550	ENST00000511410		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
5CDS-5UTR	ENST00000374550	ENST00000537378		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
5CDS-5UTR	ENST00000374550	ENST00000252100		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
3UTR-3CDS	ENST00000482370	ENST00000394671		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
3UTR-3CDS	ENST00000482370	ENST00000511410		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
3UTR-5UTR	ENST00000482370	ENST00000537378		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
3UTR-5UTR	ENST00000482370	ENST00000252100		ChiTaRS3.1			CN269184	RPL11	chr1	24022336	+	TMCO6	chr5	140021281	+
intron-5UTR	ENST00000377795	ENST00000299427		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000377795	ENST00000533371		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000377795	ENST00000534644		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000377795	ENST00000528657		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-5UTR	ENST00000353334	ENST00000299427		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000353334	ENST00000533371		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000353334	ENST00000534644		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000353334	ENST00000528657		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-5UTR	ENST00000524315	ENST00000299427		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000524315	ENST00000533371		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000524315	ENST00000534644		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000524315	ENST00000528657		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-5UTR	ENST00000009530	ENST00000299427		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000009530	ENST00000533371		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000009530	ENST00000534644		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
intron-intron	ENST00000009530	ENST00000528657		ChiTaRS3.1			DB123887	CD74	chr5	149792239	-	TPP1	chr11	6640654	-
Frame-shit	ENST00000303375	ENST00000303375		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
5CDS-intron	ENST00000303375	ENST00000446119		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
5CDS-intron	ENST00000303375	ENST00000580916		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-3CDS	ENST00000446119	ENST00000303375		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-intron	ENST00000446119	ENST00000446119		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-intron	ENST00000446119	ENST00000580916		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-3CDS	ENST00000580916	ENST00000303375		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-intron	ENST00000580916	ENST00000446119		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-intron	ENST00000580916	ENST00000580916		ChiTaRS3.1			BF800633	MRC2	chr17	60758224	+	MRC2	chr17	60758252	-
intron-3CDS	ENST00000556859	ENST00000225964		ChiTaRS3.1			AW840527	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
3UTR-3CDS	ENST00000395153	ENST00000225964		ChiTaRS3.1			AW840527	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3CDS	ENST00000335867	ENST00000225964		ChiTaRS3.1			AW840527	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3CDS	ENST00000541264	ENST00000225964		ChiTaRS3.1			AW840527	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3CDS	ENST00000555845	ENST00000225964		ChiTaRS3.1			AW840527	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3UTR	ENST00000342228	ENST00000342228		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000342228	ENST00000520262		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000342228	ENST00000520179		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000342228	ENST00000523340		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-3UTR	ENST00000520262	ENST00000342228		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000520262	ENST00000520262		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000520262	ENST00000520179		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000520262	ENST00000523340		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-3UTR	ENST00000520179	ENST00000342228		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000520179	ENST00000520262		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000520179	ENST00000520179		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000520179	ENST00000523340		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-3UTR	ENST00000523340	ENST00000342228		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000523340	ENST00000520262		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000523340	ENST00000520179		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-intron	ENST00000523340	ENST00000523340		ChiTaRS3.1			BE162973	SLC20A2	chr8	42274617	-	SLC20A2	chr8	42274664	+
intron-3UTR	ENST00000262316	ENST00000392653		ChiTaRS3.1			BE181563	RHBDF1	chr16	108595	+	SPRR2A	chr1	153028802	+
intron-3UTR	ENST00000454039	ENST00000392653		ChiTaRS3.1			BE181563	RHBDF1	chr16	108595	+	SPRR2A	chr1	153028802	+
intron-3UTR	ENST00000397967	ENST00000234454		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-intron	ENST00000397967	ENST00000498749		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-3UTR	ENST00000340900	ENST00000234454		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-intron	ENST00000340900	ENST00000498749		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-3UTR	ENST00000412779	ENST00000234454		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-intron	ENST00000412779	ENST00000498749		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-3UTR	ENST00000555698	ENST00000234454		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-intron	ENST00000555698	ENST00000498749		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-3UTR	ENST00000397970	ENST00000234454		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-intron	ENST00000397970	ENST00000498749		ChiTaRS3.1			AA026313	RNASE1	chr14	21269654	+	SPR	chr2	73119038	+
intron-3UTR	ENST00000357028	ENST00000357028		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-3UTR	ENST00000357028	ENST00000292035		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-intron	ENST00000357028	ENST00000474263		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-3UTR	ENST00000292035	ENST00000357028		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-3UTR	ENST00000292035	ENST00000292035		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-intron	ENST00000292035	ENST00000474263		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-3UTR	ENST00000474263	ENST00000357028		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-3UTR	ENST00000474263	ENST00000292035		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
intron-intron	ENST00000474263	ENST00000474263		ChiTaRS3.1			AI702094	MED27	chr9	134735568	+	MED27	chr9	134735693	-
5CDS-intron	ENST00000495032	ENST00000439268		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
5CDS-intron	ENST00000495032	ENST00000340578		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
5CDS-intron	ENST00000495032	ENST00000541471		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
5CDS-intron	ENST00000495032	ENST00000591092		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
5CDS-intron	ENST00000495032	ENST00000034275		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
5CDS-intron	ENST00000495032	ENST00000591124		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000434063	ENST00000439268		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000434063	ENST00000340578		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000434063	ENST00000541471		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000434063	ENST00000591092		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000434063	ENST00000034275		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000434063	ENST00000591124		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000429611	ENST00000439268		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000429611	ENST00000340578		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000429611	ENST00000541471		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000429611	ENST00000591092		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000429611	ENST00000034275		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000429611	ENST00000591124		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000425358	ENST00000439268		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000425358	ENST00000340578		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000425358	ENST00000541471		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000425358	ENST00000591092		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000425358	ENST00000034275		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
3UTR-intron	ENST00000425358	ENST00000591124		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000428939	ENST00000439268		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000428939	ENST00000340578		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000428939	ENST00000541471		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000428939	ENST00000591092		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000428939	ENST00000034275		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000428939	ENST00000591124		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000593300	ENST00000439268		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000593300	ENST00000340578		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000593300	ENST00000541471		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000593300	ENST00000591092		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000593300	ENST00000034275		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-intron	ENST00000593300	ENST00000591124		ChiTaRS3.1			DA585211	HOTAIRM1	chr7	27135947	+	RANBP3	chr19	5978175	-
intron-3UTR	ENST00000368802	ENST00000358430		ChiTaRS3.1			BG393386	REV3L	chr6	111694979	+	TXLNB	chr6	139562362	-
intron-3UTR	ENST00000368805	ENST00000358430		ChiTaRS3.1			BG393386	REV3L	chr6	111694979	+	TXLNB	chr6	139562362	-
intron-3UTR	ENST00000435970	ENST00000358430		ChiTaRS3.1			BG393386	REV3L	chr6	111694979	+	TXLNB	chr6	139562362	-
intron-3UTR	ENST00000358835	ENST00000358430		ChiTaRS3.1			BG393386	REV3L	chr6	111694979	+	TXLNB	chr6	139562362	-
intron-3UTR	ENST00000462119	ENST00000358430		ChiTaRS3.1			BG393386	REV3L	chr6	111694979	+	TXLNB	chr6	139562362	-
Frame-shit	ENST00000374316	ENST00000374316		ChiTaRS3.1			AA507809	ITPR3	chr6	33663532	+	ITPR3	chr6	33662810	-
Frame-shit	ENST00000374316	ENST00000605930		ChiTaRS3.1			AA507809	ITPR3	chr6	33663532	+	ITPR3	chr6	33662810	-
In-frame	ENST00000605930	ENST00000374316		ChiTaRS3.1			AA507809	ITPR3	chr6	33663532	+	ITPR3	chr6	33662810	-
In-frame	ENST00000605930	ENST00000605930		ChiTaRS3.1			AA507809	ITPR3	chr6	33663532	+	ITPR3	chr6	33662810	-
intron-3CDS	ENST00000376511	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000376511	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000484449	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000484449	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000420949	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000420949	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000549281	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000549281	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000468706	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000468706	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000449113	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000449113	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000547333	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000547333	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000475926	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000475926	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000426299	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000426299	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000551493	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000551493	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000494003	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000494003	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000383586	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000383586	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000548899	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000548899	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000478528	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000478528	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000424446	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000424446	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000552146	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000552146	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000488513	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000488513	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000429597	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000429597	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000549865	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000549865	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000482076	ENST00000360652		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-3CDS	ENST00000482076	ENST00000356872		ChiTaRS3.1			CN412070	PPP1R10	chr6	1902621	-	PCED1A	chr20	2819348	-
intron-5UTR	ENST00000447716	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000447716	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000447716	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000395243	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000395243	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000395243	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000453384	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000453384	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000453384	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000301043	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000301043	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000301043	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000450529	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000450529	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000450529	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000415040	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000415040	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000415040	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000395242	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000395242	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000395242	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000395245	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000395245	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000395245	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-5UTR	ENST00000436730	ENST00000544071		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000436730	ENST00000371933		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
intron-intron	ENST00000436730	ENST00000484461		ChiTaRS3.1			CB050469	RAB34	chr17	27044272	-	EFCAB14	chr1	47184753	-
Frame-shit	ENST00000326003	ENST00000335793		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
In-frame	ENST00000326003	ENST00000439510		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
5CDS-intron	ENST00000326003	ENST00000581014		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
5CDS-intron	ENST00000326003	ENST00000582303		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-3CDS	ENST00000597483	ENST00000335793		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-3CDS	ENST00000597483	ENST00000439510		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-intron	ENST00000597483	ENST00000581014		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-intron	ENST00000597483	ENST00000582303		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
Frame-shit	ENST00000593997	ENST00000335793		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
In-frame	ENST00000593997	ENST00000439510		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
5CDS-intron	ENST00000593997	ENST00000581014		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
5CDS-intron	ENST00000593997	ENST00000582303		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-3CDS	ENST00000595952	ENST00000335793		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-3CDS	ENST00000595952	ENST00000439510		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-intron	ENST00000595952	ENST00000581014		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-intron	ENST00000595952	ENST00000582303		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
Frame-shit	ENST00000360617	ENST00000335793		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
In-frame	ENST00000360617	ENST00000439510		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
5CDS-intron	ENST00000360617	ENST00000581014		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
5CDS-intron	ENST00000360617	ENST00000582303		ChiTaRS3.1			DA874433	KLK3	chr19	51361401	+	CDC42EP4	chr17	71282209	-
intron-3CDS	ENST00000322723	ENST00000370873		ChiTaRS3.1			EC492083	NCL	chr2	232325512	-	PSMA7	chr20	60713308	-
intron-5UTR	ENST00000322723	ENST00000484488		ChiTaRS3.1			EC492083	NCL	chr2	232325512	-	PSMA7	chr20	60713308	-
intron-5UTR	ENST00000322723	ENST00000370861		ChiTaRS3.1			EC492083	NCL	chr2	232325512	-	PSMA7	chr20	60713308	-
intron-intron	ENST00000322723	ENST00000370858		ChiTaRS3.1			EC492083	NCL	chr2	232325512	-	PSMA7	chr20	60713308	-
intron-intron	ENST00000343348	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372391		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372388		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000459739		ChiTaRS3.1			BF990533	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-3CDS	ENST00000361566	ENST00000361566		ChiTaRS3.1			BG875195	KRT19	chr17	39680235	-	KRT19	chr17	39680736	+
intron-3CDS	ENST00000605917	ENST00000261712		ChiTaRS3.1			AI291788	CASC15	chr6	22054080	-	PSMD11	chr17	30800904	+
intron-3CDS	ENST00000605917	ENST00000457654		ChiTaRS3.1			AI291788	CASC15	chr6	22054080	-	PSMD11	chr17	30800904	+
intron-intron	ENST00000354668	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000428261	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000420739	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000415443	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000447324	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000383754	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000441980	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000311042	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000396228	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
intron-intron	ENST00000479860	ENST00000330978		ChiTaRS3.1			BF932390	MOBP	chr3	39567238	+	BOLA2	chr16	30078851	+
In-frame	ENST00000589037	ENST00000393193		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589037	ENST00000376392		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589037	ENST00000555572		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000253788	ENST00000393193		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000253788	ENST00000376392		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000253788	ENST00000555572		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589913	ENST00000393193		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589913	ENST00000376392		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
In-frame	ENST00000589913	ENST00000555572		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
intron-3CDS	ENST00000590864	ENST00000393193		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
intron-3CDS	ENST00000590864	ENST00000376392		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
intron-3CDS	ENST00000590864	ENST00000555572		ChiTaRS3.1			EC572330	RPL27	chr17	41150848	+	NME2	chr17	49245608	+
Frame-shit	ENST00000587834	ENST00000231751		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
5CDS-intron	ENST00000587834	ENST00000426532		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
5CDS-intron	ENST00000587834	ENST00000417439		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
5CDS-intron	ENST00000587834	ENST00000493056		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
intron-3CDS	ENST00000592774	ENST00000231751		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
intron-intron	ENST00000592774	ENST00000426532		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
intron-intron	ENST00000592774	ENST00000417439		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
intron-intron	ENST00000592774	ENST00000493056		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
Frame-shit	ENST00000588875	ENST00000231751		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
5CDS-intron	ENST00000588875	ENST00000426532		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
5CDS-intron	ENST00000588875	ENST00000417439		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
5CDS-intron	ENST00000588875	ENST00000493056		ChiTaRS3.1			DB205708	SEC11C	chr18	56816785	+	LTF	chr3	46506349	-
In-frame	ENST00000326003	ENST00000219313		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000326003	ENST00000540379		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000326003	ENST00000567958		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000326003	ENST00000568615		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
In-frame	ENST00000597483	ENST00000219313		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000597483	ENST00000540379		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000597483	ENST00000567958		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000597483	ENST00000568615		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
In-frame	ENST00000593997	ENST00000219313		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000593997	ENST00000540379		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000593997	ENST00000567958		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000593997	ENST00000568615		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
In-frame	ENST00000595952	ENST00000219313		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000595952	ENST00000540379		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000595952	ENST00000567958		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000595952	ENST00000568615		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
In-frame	ENST00000360617	ENST00000219313		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000360617	ENST00000540379		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000360617	ENST00000567958		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
5CDS-5UTR	ENST00000360617	ENST00000568615		ChiTaRS3.1			BF858256	KLK3	chr19	51361508	+	PSMD7	chr16	74330845	+
3UTR-3UTR	ENST00000258796	ENST00000325881		ChiTaRS3.1			BF229264	TTYH3	chr7	2701785	-	SNX22	chr15	64449048	+
3UTR-3UTR	ENST00000407643	ENST00000325881		ChiTaRS3.1			BF229264	TTYH3	chr7	2701785	-	SNX22	chr15	64449048	+
3UTR-3UTR	ENST00000403167	ENST00000325881		ChiTaRS3.1			BF229264	TTYH3	chr7	2701785	-	SNX22	chr15	64449048	+
intron-3UTR	ENST00000477439	ENST00000325881		ChiTaRS3.1			BF229264	TTYH3	chr7	2701785	-	SNX22	chr15	64449048	+
3UTR-3UTR	ENST00000491455	ENST00000491455		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
3UTR-3UTR	ENST00000491455	ENST00000415093		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
3UTR-3UTR	ENST00000491455	ENST00000366957		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
3UTR-3UTR	ENST00000415093	ENST00000491455		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
3UTR-3UTR	ENST00000415093	ENST00000415093		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
3UTR-3UTR	ENST00000415093	ENST00000366957		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
5CDS-3UTR	ENST00000366957	ENST00000491455		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
5CDS-3UTR	ENST00000366957	ENST00000415093		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
5CDS-3UTR	ENST00000366957	ENST00000366957		ChiTaRS3.1			AA506912	SMYD2	chr1	214507625	+	SMYD2	chr1	214507559	-
intron-intron	ENST00000283928	ENST00000263851		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000283928	ENST00000520269		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000283928	ENST00000379113		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000283928	ENST00000519833		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000283928	ENST00000541183		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000466516	ENST00000263851		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000466516	ENST00000520269		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000466516	ENST00000379113		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000466516	ENST00000519833		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000466516	ENST00000541183		ChiTaRS3.1			DA511456	JAZF1	chr7	27880443	-	IL7	chr8	79674724	-
intron-intron	ENST00000374825	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374825	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000496118	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000580234	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000374831	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395289	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000443797	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000395287	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449085	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000438194	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466744	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000383108	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547895	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549843	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442863	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000552513	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000442219	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000498329	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000488549	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000425201	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399529	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399528	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550142	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000548837	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000399527	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000549236	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000482105	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000414731	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000449118	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000550598	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000479973	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000546777	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000450320	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000547286	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000552587	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000549126	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000553146	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000448067	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
5CDS-intron	ENST00000436979	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000311573		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000368340		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000347088		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000361831		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000355499		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000404643		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000407221		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000359205		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000295566		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000368330		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000368339		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000535662		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000405763		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000438245		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-intron	ENST00000466208	ENST00000476093		ChiTaRS3.1			BF763209	BRD2	chr6	4426481	-	YY1AP1	chr1	155658379	+
intron-5UTR	ENST00000252675	ENST00000252675		ChiTaRS3.1			AA722701	FUT5	chr19	5896511	+	FUT5	chr19	5896955	-
intron-intron	ENST00000252675	ENST00000588525		ChiTaRS3.1			AA722701	FUT5	chr19	5896511	+	FUT5	chr19	5896955	-
intron-5UTR	ENST00000588525	ENST00000252675		ChiTaRS3.1			AA722701	FUT5	chr19	5896511	+	FUT5	chr19	5896955	-
intron-intron	ENST00000588525	ENST00000588525		ChiTaRS3.1			AA722701	FUT5	chr19	5896511	+	FUT5	chr19	5896955	-
intron-intron	ENST00000292614	ENST00000336934		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000292614	ENST00000255486		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000292614	ENST00000399365		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000292614	ENST00000487412		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000292614	ENST00000439831		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000393794	ENST00000336934		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000393794	ENST00000255486		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000393794	ENST00000399365		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000393794	ENST00000487412		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000393794	ENST00000439831		ChiTaRS3.1			BI049495	POLR2J	chr7	102116649	-	STARD13	chr13	34004006	-
intron-intron	ENST00000564878	ENST00000564878		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000564878	ENST00000393062		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000564878	ENST00000378247		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000564878	ENST00000563972		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000393062	ENST00000564878		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000393062	ENST00000393062		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000393062	ENST00000378247		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000393062	ENST00000563972		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000378247	ENST00000564878		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000378247	ENST00000393062		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000378247	ENST00000378247		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000378247	ENST00000563972		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000563972	ENST00000564878		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000563972	ENST00000393062		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000563972	ENST00000378247		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-intron	ENST00000563972	ENST00000563972		ChiTaRS3.1			BI058572	SPIRE2	chr16	89927630	+	SPIRE2	chr16	89929998	-
intron-3CDS	ENST00000537344	ENST00000572681		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000537344	ENST00000575839		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000537344	ENST00000160740		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000537344	ENST00000575354		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-3CDS	ENST00000256194	ENST00000572681		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000256194	ENST00000575839		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000256194	ENST00000160740		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000256194	ENST00000575354		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-3CDS	ENST00000527546	ENST00000572681		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000527546	ENST00000575839		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000527546	ENST00000160740		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000527546	ENST00000575354		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-3CDS	ENST00000342902	ENST00000572681		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000342902	ENST00000575839		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000342902	ENST00000160740		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000342902	ENST00000575354		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
Frame-shit	ENST00000379612	ENST00000572681		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
5CDS-intron	ENST00000379612	ENST00000575839		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
5CDS-intron	ENST00000379612	ENST00000160740		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
5CDS-intron	ENST00000379612	ENST00000575354		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-3CDS	ENST00000527195	ENST00000572681		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000527195	ENST00000575839		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000527195	ENST00000160740		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
intron-intron	ENST00000527195	ENST00000575354		ChiTaRS3.1			AW366793	MICAL2	chr11	12281615	-	CIC	chr19	42793143	-
3UTR-3UTR	ENST00000528712	ENST00000528712		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
3UTR-3UTR	ENST00000528712	ENST00000335135		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
3UTR-intron	ENST00000528712	ENST00000532059		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
3UTR-3UTR	ENST00000335135	ENST00000528712		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
3UTR-3UTR	ENST00000335135	ENST00000335135		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
3UTR-intron	ENST00000335135	ENST00000532059		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
intron-3UTR	ENST00000532059	ENST00000528712		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
intron-3UTR	ENST00000532059	ENST00000335135		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
intron-intron	ENST00000532059	ENST00000532059		ChiTaRS3.1			BM850490	GATA4	chr8	11616935	-	GATA4	chr8	11616345	+
intron-intron	ENST00000377298	ENST00000361205		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000399848		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000359446		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000587757		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000585931		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000586765		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000590308		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000592991		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000361205		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000399848		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000359446		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000587757		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000585931		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000586765		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000590308		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000592991		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000361205		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000399848		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000359446		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000587757		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000585931		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000586765		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000590308		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000592991		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000361205		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000399848		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000359446		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000587757		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000585931		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000586765		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000590308		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000592991		ChiTaRS3.1			BI036203	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-3CDS	ENST00000354190	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000354190	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000354190	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000354190	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000354190	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-intron	ENST00000354190	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-intron	ENST00000354190	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000398492	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000398492	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000398492	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000398492	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000398492	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-intron	ENST00000398492	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-intron	ENST00000398492	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000227214	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000227214	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000227214	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000227214	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000227214	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-intron	ENST00000227214	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-intron	ENST00000227214	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000398494	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000398494	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000398494	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000398494	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000398494	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-intron	ENST00000398494	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-intron	ENST00000398494	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000543085	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000543085	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000543085	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000543085	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-3CDS	ENST00000543085	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-intron	ENST00000543085	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
5UTR-intron	ENST00000543085	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-3CDS	ENST00000544532	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-3CDS	ENST00000544532	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-3CDS	ENST00000544532	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-3CDS	ENST00000544532	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-3CDS	ENST00000544532	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-intron	ENST00000544532	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-intron	ENST00000544532	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000535129	ENST00000354190		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000535129	ENST00000398492		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000535129	ENST00000227214		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000535129	ENST00000398494		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-3CDS	ENST00000535129	ENST00000543085		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-intron	ENST00000535129	ENST00000544532		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
intron-intron	ENST00000535129	ENST00000535129		ChiTaRS3.1			AI359186	PLEKHB1	chr11	73358751	-	PLEKHB1	chr11	73372582	-
3UTR-3UTR	ENST00000343017	ENST00000343017		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-intron	ENST00000343017	ENST00000326277		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000343017	ENST00000381410		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000326277	ENST00000343017		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-intron	ENST00000326277	ENST00000326277		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000326277	ENST00000381410		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000381410	ENST00000343017		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-intron	ENST00000381410	ENST00000326277		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000381410	ENST00000381410		ChiTaRS3.1			AA745144	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000499869	ENST00000493902		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000499869	ENST00000394998		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000499869	ENST00000313843		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000382451	ENST00000493902		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000382451	ENST00000394998		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000382451	ENST00000313843		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000382452	ENST00000493902		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000382452	ENST00000394998		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000382452	ENST00000313843		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000515743	ENST00000493902		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000515743	ENST00000394998		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000515743	ENST00000313843		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000502702	ENST00000493902		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000502702	ENST00000394998		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
intron-3UTR	ENST00000502702	ENST00000313843		ChiTaRS3.1			BQ346391	WDR1	chr4	10087865	+	STX4	chr16	31045423	-
5CDS-intron	ENST00000561924	ENST00000396353		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000561924	ENST00000396355		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000561924	ENST00000396354		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000561924	ENST00000342673		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000561924	ENST00000571896		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000290858	ENST00000396353		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000290858	ENST00000396355		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000290858	ENST00000396354		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000290858	ENST00000342673		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000290858	ENST00000571896		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000412916	ENST00000396353		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000412916	ENST00000396355		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000412916	ENST00000396354		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000412916	ENST00000342673		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
5CDS-intron	ENST00000412916	ENST00000571896		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
intron-intron	ENST00000568858	ENST00000396353		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
intron-intron	ENST00000568858	ENST00000396355		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
intron-intron	ENST00000568858	ENST00000396354		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
intron-intron	ENST00000568858	ENST00000342673		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
intron-intron	ENST00000568858	ENST00000571896		ChiTaRS3.1			AF249898	CBFB	chr16	67116213	+	NDE1	chr16	15814910	-
In-frame	ENST00000532317	ENST00000446906		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000532317	ENST00000377072		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000532317	ENST00000307729		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000532317	ENST00000377059		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-3UTR	ENST00000532317	ENST00000495130		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000532317	ENST00000377100		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000532317	ENST00000377091		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000526033	ENST00000446906		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000526033	ENST00000377072		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000526033	ENST00000307729		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000526033	ENST00000377059		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-3UTR	ENST00000526033	ENST00000495130		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000526033	ENST00000377100		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000526033	ENST00000377091		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000393346	ENST00000446906		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000393346	ENST00000377072		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000393346	ENST00000307729		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000393346	ENST00000377059		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-3UTR	ENST00000393346	ENST00000495130		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000393346	ENST00000377100		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000393346	ENST00000377091		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
Frame-shit	ENST00000528398	ENST00000446906		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
Frame-shit	ENST00000528398	ENST00000377072		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
Frame-shit	ENST00000528398	ENST00000307729		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
Frame-shit	ENST00000528398	ENST00000377059		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-3UTR	ENST00000528398	ENST00000495130		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000528398	ENST00000377100		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000528398	ENST00000377091		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000356360	ENST00000446906		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000356360	ENST00000377072		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000356360	ENST00000307729		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000356360	ENST00000377059		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-3UTR	ENST00000356360	ENST00000495130		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000356360	ENST00000377100		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
5CDS-intron	ENST00000356360	ENST00000377091		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-3CDS	ENST00000528411	ENST00000446906		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-3CDS	ENST00000528411	ENST00000377072		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-3CDS	ENST00000528411	ENST00000307729		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-3CDS	ENST00000528411	ENST00000377059		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-3UTR	ENST00000528411	ENST00000495130		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-intron	ENST00000528411	ENST00000377100		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
intron-intron	ENST00000528411	ENST00000377091		ChiTaRS3.1			AF060932	PICALM	chr11	85692172	-	MLLT10	chr10	21875222	+
In-frame	ENST00000353024	ENST00000369291		ChiTaRS3.1			CB137847	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
In-frame	ENST00000392712	ENST00000369291		ChiTaRS3.1			CB137847	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
In-frame	ENST00000368849	ENST00000369291		ChiTaRS3.1			CB137847	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
In-frame	ENST00000368848	ENST00000369291		ChiTaRS3.1			CB137847	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
5UTR-3CDS	ENST00000538902	ENST00000369291		ChiTaRS3.1			CB137847	TUFT1	chr1	151512903	+	RNF115	chr1	145646114	+
intron-3CDS	ENST00000316623	ENST00000316623		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-intron	ENST00000316623	ENST00000561429		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-intron	ENST00000316623	ENST00000560355		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-3CDS	ENST00000561429	ENST00000316623		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-intron	ENST00000561429	ENST00000561429		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-intron	ENST00000561429	ENST00000560355		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-3CDS	ENST00000560355	ENST00000316623		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-intron	ENST00000560355	ENST00000561429		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
intron-intron	ENST00000560355	ENST00000560355		ChiTaRS3.1			BP321103	FBN1	chr15	48782079	-	FBN1	chr15	48829932	-
In-frame	ENST00000534358	ENST00000532317		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000534358	ENST00000526033		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000534358	ENST00000393346		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000534358	ENST00000528398		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000534358	ENST00000356360		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
5CDS-intron	ENST00000534358	ENST00000528411		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000389506	ENST00000532317		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000389506	ENST00000526033		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000389506	ENST00000393346		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000389506	ENST00000528398		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000389506	ENST00000356360		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
5CDS-intron	ENST00000389506	ENST00000528411		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000354520	ENST00000532317		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000354520	ENST00000526033		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000354520	ENST00000393346		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000354520	ENST00000528398		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
In-frame	ENST00000354520	ENST00000356360		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
5CDS-intron	ENST00000354520	ENST00000528411		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
3UTR-3CDS	ENST00000420751	ENST00000532317		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
3UTR-3CDS	ENST00000420751	ENST00000526033		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
3UTR-3CDS	ENST00000420751	ENST00000393346		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
3UTR-3CDS	ENST00000420751	ENST00000528398		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
3UTR-3CDS	ENST00000420751	ENST00000356360		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
3UTR-intron	ENST00000420751	ENST00000528411		ChiTaRS3.1			AF477006	KMT2A	chr11	118355029	+	PICALM	chr11	85718628	-
intron-3CDS	ENST00000261776	ENST00000562787		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000261776	ENST00000440851		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000261776	ENST00000219172		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000261776	ENST00000564817		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-5UTR	ENST00000261776	ENST00000562947		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-intron	ENST00000261776	ENST00000445712		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000571759	ENST00000562787		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000571759	ENST00000440851		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000571759	ENST00000219172		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000571759	ENST00000564817		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-5UTR	ENST00000571759	ENST00000562947		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-intron	ENST00000571759	ENST00000445712		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000536184	ENST00000562787		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000536184	ENST00000440851		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000536184	ENST00000219172		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3CDS	ENST00000536184	ENST00000564817		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-5UTR	ENST00000536184	ENST00000562947		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-intron	ENST00000536184	ENST00000445712		ChiTaRS3.1			BF756717	VAC14	chr16	70778361	+	CENPT	chr16	67866188	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835150	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
5CDS-intron	ENST00000389682	ENST00000389682		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000389682	ENST00000498545		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000389682	ENST00000536142		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000389682	ENST00000409193		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
3UTR-intron	ENST00000498545	ENST00000389682		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
3UTR-intron	ENST00000498545	ENST00000498545		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
3UTR-intron	ENST00000498545	ENST00000536142		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
3UTR-intron	ENST00000498545	ENST00000409193		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000536142	ENST00000389682		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000536142	ENST00000498545		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000536142	ENST00000536142		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
5CDS-intron	ENST00000536142	ENST00000409193		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
intron-intron	ENST00000409193	ENST00000389682		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
intron-intron	ENST00000409193	ENST00000498545		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
intron-intron	ENST00000409193	ENST00000536142		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
intron-intron	ENST00000409193	ENST00000409193		ChiTaRS3.1			DA032996	TSN	chr2	122513404	+	TSN	chr17	18087645	+
intron-3UTR	ENST00000570101	ENST00000457543		ChiTaRS3.1			BG987072	SLC38A7	chr16	58700435	+	ZNF853	chr7	6663198	+
intron-3UTR	ENST00000219320	ENST00000457543		ChiTaRS3.1			BG987072	SLC38A7	chr16	58700435	+	ZNF853	chr7	6663198	+
intron-3UTR	ENST00000564100	ENST00000457543		ChiTaRS3.1			BG987072	SLC38A7	chr16	58700435	+	ZNF853	chr7	6663198	+
intron-3UTR	ENST00000564010	ENST00000457543		ChiTaRS3.1			BG987072	SLC38A7	chr16	58700435	+	ZNF853	chr7	6663198	+
intron-3UTR	ENST00000566953	ENST00000457543		ChiTaRS3.1			BG987072	SLC38A7	chr16	58700435	+	ZNF853	chr7	6663198	+
intron-3UTR	ENST00000564391	ENST00000457543		ChiTaRS3.1			BG987072	SLC38A7	chr16	58700435	+	ZNF853	chr7	6663198	+
intron-intron	ENST00000266070	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000266070	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000266070	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000266070	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000395343	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395343	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395343	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395343	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000395340	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395340	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395340	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395340	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000395335	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395335	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395335	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000395335	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000370371	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370371	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370371	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370371	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000370368	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370368	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370368	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370368	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000354665	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000354665	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000354665	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000354665	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000370366	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370366	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370366	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000370366	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-intron	ENST00000266071	ENST00000464451		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000266071	ENST00000243253		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000266071	ENST00000424880		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
intron-3UTR	ENST00000266071	ENST00000483956		ChiTaRS3.1			BF959743	DIDO1	chr20	61541296	+	SEC61A1	chr3	127789080	+
5CDS-intron	ENST00000252699	ENST00000205890		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000252699	ENST00000412324		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000252699	ENST00000418233		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000252699	ENST00000585180		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000252699	ENST00000451725		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000424234	ENST00000205890		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000424234	ENST00000412324		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000424234	ENST00000418233		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000424234	ENST00000585180		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000424234	ENST00000451725		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000390009	ENST00000205890		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000390009	ENST00000412324		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000390009	ENST00000418233		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000390009	ENST00000585180		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
5CDS-intron	ENST00000390009	ENST00000451725		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
intron-intron	ENST00000497637	ENST00000205890		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
intron-intron	ENST00000497637	ENST00000412324		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
intron-intron	ENST00000497637	ENST00000418233		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
intron-intron	ENST00000497637	ENST00000585180		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
intron-intron	ENST00000497637	ENST00000451725		ChiTaRS3.1			BF991832	ACTN4	chr19	39214882	-	MYO15A	chr17	18075745	+
intron-intron	ENST00000316403	ENST00000430275		ChiTaRS3.1			BI002914	CLU	chr8	27455544	-	FER1L4	chr20	34146589	+
intron-intron	ENST00000546343	ENST00000430275		ChiTaRS3.1			BI002914	CLU	chr8	27455544	-	FER1L4	chr20	34146589	+
intron-intron	ENST00000560366	ENST00000430275		ChiTaRS3.1			BI002914	CLU	chr8	27455544	-	FER1L4	chr20	34146589	+
intron-intron	ENST00000405140	ENST00000430275		ChiTaRS3.1			BI002914	CLU	chr8	27455544	-	FER1L4	chr20	34146589	+
intron-intron	ENST00000523500	ENST00000430275		ChiTaRS3.1			BI002914	CLU	chr8	27455544	-	FER1L4	chr20	34146589	+
intron-3CDS	ENST00000588240	ENST00000246802		ChiTaRS3.1			BF802471	TAF15	chr17	34171079	-	GLTSCR2	chr19	48259806	-
intron-3UTR	ENST00000588240	ENST00000598681		ChiTaRS3.1			BF802471	TAF15	chr17	34171079	-	GLTSCR2	chr19	48259806	-
intron-3CDS	ENST00000592237	ENST00000246802		ChiTaRS3.1			BF802471	TAF15	chr17	34171079	-	GLTSCR2	chr19	48259806	-
intron-3UTR	ENST00000592237	ENST00000598681		ChiTaRS3.1			BF802471	TAF15	chr17	34171079	-	GLTSCR2	chr19	48259806	-
intron-3CDS	ENST00000311979	ENST00000246802		ChiTaRS3.1			BF802471	TAF15	chr17	34171079	-	GLTSCR2	chr19	48259806	-
intron-3UTR	ENST00000311979	ENST00000598681		ChiTaRS3.1			BF802471	TAF15	chr17	34171079	-	GLTSCR2	chr19	48259806	-
5CDS-intron	ENST00000410026	ENST00000410026		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000410026	ENST00000409510		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000410026	ENST00000425611		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000409510	ENST00000410026		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000409510	ENST00000409510		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000409510	ENST00000425611		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000425611	ENST00000410026		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000425611	ENST00000409510		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
5CDS-intron	ENST00000425611	ENST00000425611		ChiTaRS3.1			BF094019	NABP1	chr2	192546699	+	NABP1	chr2	192543233	+
Frame-shit	ENST00000258341	ENST00000336898		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
Frame-shit	ENST00000258341	ENST00000376282		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
5CDS-intron	ENST00000258341	ENST00000529095		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
5CDS-intron	ENST00000258341	ENST00000526177		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
5CDS-intron	ENST00000258341	ENST00000533784		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
5CDS-intron	ENST00000258341	ENST00000529721		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
5CDS-intron	ENST00000258341	ENST00000533805		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
5CDS-3UTR	ENST00000258341	ENST00000443276		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-3CDS	ENST00000466964	ENST00000336898		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-3CDS	ENST00000466964	ENST00000376282		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-intron	ENST00000466964	ENST00000529095		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-intron	ENST00000466964	ENST00000526177		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-intron	ENST00000466964	ENST00000533784		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-intron	ENST00000466964	ENST00000529721		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-intron	ENST00000466964	ENST00000533805		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-3UTR	ENST00000466964	ENST00000443276		ChiTaRS3.1			BF804090	LAMC1	chr1	183079711	-	GDPD5	chr11	75152319	-
intron-3UTR	ENST00000600059	ENST00000600059		ChiTaRS3.1			BG959282	LMTK3	chr19	48988946	+	LMTK3	chr19	48988751	-
intron-3UTR	ENST00000600059	ENST00000270238		ChiTaRS3.1			BG959282	LMTK3	chr19	48988946	+	LMTK3	chr19	48988751	-
intron-3UTR	ENST00000270238	ENST00000600059		ChiTaRS3.1			BG959282	LMTK3	chr19	48988946	+	LMTK3	chr19	48988751	-
intron-3UTR	ENST00000270238	ENST00000270238		ChiTaRS3.1			BG959282	LMTK3	chr19	48988946	+	LMTK3	chr19	48988751	-
intron-3UTR	ENST00000534749	ENST00000435097		ChiTaRS3.1			BF876894	PITPNM1	chr11	67265009	-	FAM83H-AS1	chr8	144823808	-
intron-3UTR	ENST00000436757	ENST00000435097		ChiTaRS3.1			BF876894	PITPNM1	chr11	67265009	-	FAM83H-AS1	chr8	144823808	-
intron-3UTR	ENST00000356404	ENST00000435097		ChiTaRS3.1			BF876894	PITPNM1	chr11	67265009	-	FAM83H-AS1	chr8	144823808	-
intron-3UTR	ENST00000526450	ENST00000435097		ChiTaRS3.1			BF876894	PITPNM1	chr11	67265009	-	FAM83H-AS1	chr8	144823808	-
intron-3CDS	ENST00000249760	ENST00000249760		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000249760	ENST00000490194		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000249760	ENST00000487418		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000249760	ENST00000479013		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3CDS	ENST00000490194	ENST00000249760		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000490194	ENST00000490194		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000490194	ENST00000487418		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000490194	ENST00000479013		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3CDS	ENST00000487418	ENST00000249760		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000487418	ENST00000490194		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000487418	ENST00000487418		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000487418	ENST00000479013		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3CDS	ENST00000479013	ENST00000249760		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000479013	ENST00000490194		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000479013	ENST00000487418		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
intron-3UTR	ENST00000479013	ENST00000479013		ChiTaRS3.1			AA232469	IVD	chr15	40703459	-	IVD	chr15	40702909	+
3UTR-3CDS	ENST00000333676	ENST00000333676		ChiTaRS3.1			AI761218	MRPL12	chr17	79674354	-	MRPL12	chr17	79671273	+
3UTR-3UTR	ENST00000344995	ENST00000323760		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000344995	ENST00000357274		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000344995	ENST00000348983		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000344995	ENST00000356505		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000344995	ENST00000415130		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000344995	ENST00000513970		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000344995	ENST00000514555		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000460943	ENST00000323760		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000460943	ENST00000357274		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000460943	ENST00000348983		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000460943	ENST00000356505		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000460943	ENST00000415130		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000460943	ENST00000513970		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000460943	ENST00000514555		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000398475	ENST00000323760		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000398475	ENST00000357274		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000398475	ENST00000348983		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000398475	ENST00000356505		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000398475	ENST00000415130		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000398475	ENST00000513970		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000398475	ENST00000514555		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000275635	ENST00000323760		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000275635	ENST00000357274		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000275635	ENST00000348983		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-3UTR	ENST00000275635	ENST00000356505		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000275635	ENST00000415130		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000275635	ENST00000513970		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
3UTR-intron	ENST00000275635	ENST00000514555		ChiTaRS3.1			BF911758	LAT2	chr7	73639090	+	CDC25C	chr5	137621208	-
5UTR-3CDS	ENST00000266070	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000266070	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000266070	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-intron	ENST00000266070	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000395343	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000395343	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000395343	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-intron	ENST00000395343	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000395340	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000395340	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000395340	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-intron	ENST00000395340	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000395335	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000395335	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000395335	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-intron	ENST00000395335	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000370371	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000370371	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000370371	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-intron	ENST00000370371	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000370368	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000370368	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000370368	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-intron	ENST00000370368	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000354665	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000354665	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000354665	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-intron	ENST00000354665	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000370366	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000370366	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-3CDS	ENST00000370366	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-intron	ENST00000370366	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000266071	ENST00000373448		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000266071	ENST00000373447		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-3CDS	ENST00000266071	ENST00000449821		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
5UTR-intron	ENST00000266071	ENST00000487362		ChiTaRS3.1			XX000004	DIDO1	chr20	61569141	-	TTI1	chr20	36634801	-
intron-intron	ENST00000367988	ENST00000432884		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367988	ENST00000262942		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367988	ENST00000471960		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000545897	ENST00000432884		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000545897	ENST00000262942		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000545897	ENST00000471960		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000474486	ENST00000432884		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000474486	ENST00000262942		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000474486	ENST00000471960		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367987	ENST00000432884		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367987	ENST00000262942		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367987	ENST00000471960		ChiTaRS3.1			BE933898	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
3UTR-intron	ENST00000450554	ENST00000515823		ChiTaRS3.1			CD368741	U2AF2	chr19	56186004	-	ECSCR	chr5	138784781	+
intron-intron	ENST00000308924	ENST00000515823		ChiTaRS3.1			CD368741	U2AF2	chr19	56186004	-	ECSCR	chr5	138784781	+
intron-intron	ENST00000590551	ENST00000515823		ChiTaRS3.1			CD368741	U2AF2	chr19	56186004	-	ECSCR	chr5	138784781	+
intron-intron	ENST00000339556	ENST00000352432		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000339556	ENST00000343816		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000339556	ENST00000360273		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000339556	ENST00000383800		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000339556	ENST00000397077		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000339556	ENST00000467702		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392622	ENST00000352432		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392622	ENST00000343816		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392622	ENST00000360273		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392622	ENST00000383800		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392622	ENST00000397077		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392622	ENST00000467702		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392623	ENST00000352432		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392623	ENST00000343816		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392623	ENST00000360273		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392623	ENST00000383800		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392623	ENST00000397077		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000392623	ENST00000467702		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000440685	ENST00000352432		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000440685	ENST00000343816		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000440685	ENST00000360273		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000440685	ENST00000383800		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000440685	ENST00000397077		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000440685	ENST00000467702		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000368699	ENST00000352432		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000368699	ENST00000343816		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000368699	ENST00000360273		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000368699	ENST00000383800		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000368699	ENST00000397077		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000368699	ENST00000467702		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000491177	ENST00000352432		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000491177	ENST00000343816		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000491177	ENST00000360273		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000491177	ENST00000383800		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000491177	ENST00000397077		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
intron-intron	ENST00000491177	ENST00000467702		ChiTaRS3.1			AA984232	S100A13	chr1	153604276	-	ATP2B2	chr3	10738871	-
5CDS-3UTR	ENST00000242776	ENST00000449352		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
5CDS-5UTR	ENST00000242776	ENST00000529360		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
5CDS-3UTR	ENST00000242776	ENST00000265978		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
5CDS-intron	ENST00000242776	ENST00000524416		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-3UTR	ENST00000592927	ENST00000449352		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-5UTR	ENST00000592927	ENST00000529360		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-3UTR	ENST00000592927	ENST00000265978		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-intron	ENST00000592927	ENST00000524416		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-3UTR	ENST00000454233	ENST00000449352		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-5UTR	ENST00000454233	ENST00000529360		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-3UTR	ENST00000454233	ENST00000265978		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-intron	ENST00000454233	ENST00000524416		ChiTaRS3.1			EC521059	DDX39A	chr19	14520112	-	FAM160A2	chr11	6232708	-
intron-intron	ENST00000396402	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396402	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396402	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396402	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000260433	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000260433	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000260433	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000260433	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396404	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396404	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396404	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000396404	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000559878	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000559878	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000559878	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000559878	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000405913	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000405913	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000405913	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000405913	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000557858	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000557858	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000557858	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000557858	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000492852	ENST00000496484		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000492852	ENST00000253686		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000492852	ENST00000449354		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
intron-intron	ENST00000492852	ENST00000444840		ChiTaRS3.1			BI049242	CYP19A1	chr15	51613370	-	MRPS25	chr3	15094570	-
5CDS-intron	ENST00000263239	ENST00000537971		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
5CDS-intron	ENST00000263239	ENST00000011898		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
5CDS-intron	ENST00000263239	ENST00000407263		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
5CDS-intron	ENST00000263239	ENST00000492305		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
3UTR-intron	ENST00000474694	ENST00000537971		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
3UTR-intron	ENST00000474694	ENST00000011898		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
3UTR-intron	ENST00000474694	ENST00000407263		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
3UTR-intron	ENST00000474694	ENST00000492305		ChiTaRS3.1			CB116691	DDX18	chr2	118575166	+	TSPAN9	chr12	3320841	-
In-frame	ENST00000415083	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000542420	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000542743	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000539849	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000269137	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000545952	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
intron-3CDS	ENST00000585241	ENST00000376919		ChiTaRS3.1			S79325	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
5CDS-3UTR	ENST00000259396	ENST00000585421		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000259396	ENST00000536189		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000259396	ENST00000262768		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000259396	ENST00000586057		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000538816	ENST00000585421		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000538816	ENST00000536189		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000538816	ENST00000262768		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
5CDS-3UTR	ENST00000538816	ENST00000586057		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
intron-3UTR	ENST00000477456	ENST00000585421		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
intron-3UTR	ENST00000477456	ENST00000536189		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
intron-3UTR	ENST00000477456	ENST00000262768		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
intron-3UTR	ENST00000477456	ENST00000586057		ChiTaRS3.1			BI020125	ORM1	chr9	117085485	-	TIMP2	chr17	76850281	-
intron-3CDS	ENST00000402738	ENST00000428257		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000402738	ENST00000280700		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000402738	ENST00000396649		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000402738	ENST00000417874		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-intron	ENST00000402738	ENST00000467224		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-5UTR	ENST00000402738	ENST00000422724		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000407637	ENST00000428257		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000407637	ENST00000280700		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000407637	ENST00000396649		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000407637	ENST00000417874		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-intron	ENST00000407637	ENST00000467224		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-5UTR	ENST00000407637	ENST00000422724		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000601319	ENST00000428257		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000601319	ENST00000280700		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000601319	ENST00000396649		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000601319	ENST00000417874		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-intron	ENST00000601319	ENST00000467224		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-5UTR	ENST00000601319	ENST00000422724		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000264345	ENST00000428257		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000264345	ENST00000280700		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000264345	ENST00000396649		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000264345	ENST00000417874		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-intron	ENST00000264345	ENST00000467224		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-5UTR	ENST00000264345	ENST00000422724		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000543130	ENST00000428257		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000543130	ENST00000280700		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000543130	ENST00000396649		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-3CDS	ENST00000543130	ENST00000417874		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-intron	ENST00000543130	ENST00000467224		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
intron-5UTR	ENST00000543130	ENST00000422724		ChiTaRS3.1			AU135833	HERC3	chr4	89605999	-	NGLY1	chr3	25820156	-
Frame-shit	ENST00000393980	ENST00000398970		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
Frame-shit	ENST00000393980	ENST00000300574		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
Frame-shit	ENST00000393980	ENST00000574295		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
5CDS-5UTR	ENST00000393980	ENST00000572145		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
Frame-shit	ENST00000393982	ENST00000398970		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
Frame-shit	ENST00000393982	ENST00000300574		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
Frame-shit	ENST00000393982	ENST00000574295		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
5CDS-5UTR	ENST00000393982	ENST00000572145		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
intron-3CDS	ENST00000402432	ENST00000398970		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
intron-3CDS	ENST00000402432	ENST00000300574		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
intron-3CDS	ENST00000402432	ENST00000574295		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
intron-5UTR	ENST00000402432	ENST00000572145		ChiTaRS3.1			DB067617	FABP6	chr5	159640827	+	CRK	chr17	1340451	-
5CDS-intron	ENST00000529163	ENST00000424859		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000529163	ENST00000535008		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000529163	ENST00000401970		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000529163	ENST00000543266		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000394920	ENST00000424859		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000394920	ENST00000535008		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000394920	ENST00000401970		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000394920	ENST00000543266		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000527914	ENST00000424859		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000527914	ENST00000535008		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000527914	ENST00000401970		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000527914	ENST00000543266		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000262584	ENST00000424859		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000262584	ENST00000535008		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000262584	ENST00000401970		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
5CDS-intron	ENST00000262584	ENST00000543266		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
intron-intron	ENST00000528957	ENST00000424859		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
intron-intron	ENST00000528957	ENST00000535008		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
intron-intron	ENST00000528957	ENST00000401970		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
intron-intron	ENST00000528957	ENST00000543266		ChiTaRS3.1			BG180082	RPL8	chr8	146015154	-	LHFPL3	chr7	104381901	+
intron-3UTR	ENST00000390168	ENST00000307365		ChiTaRS3.1			DW438966	H19	chr11	2018863	-	DDIT4	chr10	74035655	+
intron-3CDS	ENST00000253363	ENST00000340645		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000253363	ENST00000393667		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-intron	ENST00000253363	ENST00000472829		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000361162	ENST00000340645		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000361162	ENST00000393667		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-intron	ENST00000361162	ENST00000472829		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000528062	ENST00000340645		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000528062	ENST00000393667		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-intron	ENST00000528062	ENST00000472829		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000407261	ENST00000340645		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000407261	ENST00000393667		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-intron	ENST00000407261	ENST00000472829		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000397370	ENST00000340645		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000397370	ENST00000393667		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-intron	ENST00000397370	ENST00000472829		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000463098	ENST00000340645		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000463098	ENST00000393667		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-intron	ENST00000463098	ENST00000472829		ChiTaRS3.1			DW433159	RBM39	chr20	34330078	-	GOLGB1	chr3	121411042	-
intron-3CDS	ENST00000399082	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399082	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399082	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399082	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399079	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399079	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399079	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399079	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000374943	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000374943	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000374943	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000374943	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000434651	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000434651	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000434651	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000434651	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399084	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399084	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399084	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399084	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000460185	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000460185	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000460185	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000460185	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000383121	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000383121	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000383121	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000383121	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000548953	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000548953	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000548953	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000548953	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000434886	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000434886	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000434886	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000434886	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000430790	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000430790	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000430790	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000430790	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000416192	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000416192	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000416192	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000416192	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399074	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399074	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399074	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399074	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000422950	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000422950	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000422950	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000422950	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000486521	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000486521	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000486521	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000486521	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000424530	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000424530	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000424530	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000424530	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000433936	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000433936	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000433936	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000433936	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399088	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399088	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399088	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399088	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399065	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399065	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399065	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399065	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000413089	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000413089	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000413089	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000413089	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000476430	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000476430	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000476430	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000476430	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000383247	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000383247	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000383247	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000383247	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399670	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399670	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000399670	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000399670	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000551970	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000551970	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000551970	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000551970	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000415926	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000415926	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000415926	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000415926	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000428219	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000428219	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000428219	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000428219	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000419914	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000419914	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000419914	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000419914	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000421888	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000421888	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000421888	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000421888	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000424806	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000424806	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000424806	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000424806	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000547498	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000547498	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000547498	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000547498	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000493020	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000493020	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000493020	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000493020	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000414518	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000414518	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000414518	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000414518	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000549367	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000549367	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000549367	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000549367	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000548083	ENST00000318607		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000548083	ENST00000519004		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000548083	ENST00000522387		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-intron	ENST00000548083	ENST00000519596		ChiTaRS3.1			DA592957	HLA-DQB1	chr6	32629873	-	PABPC1	chr8	101733671	-
intron-3CDS	ENST00000357365	ENST00000228468		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000357365	ENST00000447966		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000357365	ENST00000552438		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000298537	ENST00000228468		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000298537	ENST00000447966		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000298537	ENST00000552438		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000371725	ENST00000228468		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000371725	ENST00000447966		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000371725	ENST00000552438		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000461693	ENST00000228468		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000461693	ENST00000447966		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
intron-3CDS	ENST00000461693	ENST00000552438		ChiTaRS3.1			AW134599	SDCCAG3	chr9	139297091	+	ASIC1	chr12	50471028	-
Frame-shit	ENST00000278742	ENST00000396743		ChiTaRS3.1			BX390952	ST14	chr11	130060547	+	OTUD5	chrX	48814500	-
Frame-shit	ENST00000278742	ENST00000156084		ChiTaRS3.1			BX390952	ST14	chr11	130060547	+	OTUD5	chrX	48814500	-
Frame-shit	ENST00000278742	ENST00000376488		ChiTaRS3.1			BX390952	ST14	chr11	130060547	+	OTUD5	chrX	48814500	-
5CDS-intron	ENST00000278742	ENST00000428668		ChiTaRS3.1			BX390952	ST14	chr11	130060547	+	OTUD5	chrX	48814500	-
5CDS-intron	ENST00000278742	ENST00000484499		ChiTaRS3.1			BX390952	ST14	chr11	130060547	+	OTUD5	chrX	48814500	-
intron-3CDS	ENST00000521654	ENST00000261413		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000457646		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000513900		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000515404		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000522562		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000521654	ENST00000522095		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000261413		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000457646		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000513900		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000515404		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000522562		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000560949	ENST00000522095		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000261413		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000457646		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000513900		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000515404		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000522562		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000454842	ENST00000522095		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000261413		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000457646		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000513900		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000515404		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000522562		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000368414	ENST00000522095		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000261413		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000457646		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000513900		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000515404		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
In-frame	ENST00000359704	ENST00000522562		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
5CDS-intron	ENST00000359704	ENST00000522095		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000261413		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000457646		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000513900		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000515404		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000522562		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000275184	ENST00000522095		ChiTaRS3.1			DB085590	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
3UTR-3CDS	ENST00000287908	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000287908	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000287908	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000287908	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000287908	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-intron	ENST00000287908	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394626	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394626	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394626	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394626	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394626	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-intron	ENST00000394626	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000394622	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000394622	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000394622	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000394622	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-3CDS	ENST00000394622	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
3UTR-intron	ENST00000394622	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394632	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394632	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394632	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394632	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394632	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-intron	ENST00000394632	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394621	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394621	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394621	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394621	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394621	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-intron	ENST00000394621	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000402625	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000402625	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000402625	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000402625	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000402625	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-intron	ENST00000402625	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394629	ENST00000300527		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394629	ENST00000310645		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394629	ENST00000357838		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394629	ENST00000409416		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-3CDS	ENST00000394629	ENST00000397763		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
intron-intron	ENST00000394629	ENST00000460886		ChiTaRS3.1			DA568273	STEAP2	chr7	89865111	+	COL6A2	chr21	47545844	+
Frame-shit	ENST00000373547	ENST00000308249		ChiTaRS3.1			DA323019	PPP6C	chr9	127933364	-	PPM1E	chr17	57033007	+
Frame-shit	ENST00000415905	ENST00000308249		ChiTaRS3.1			DA323019	PPP6C	chr9	127933364	-	PPM1E	chr17	57033007	+
Frame-shit	ENST00000451402	ENST00000308249		ChiTaRS3.1			DA323019	PPP6C	chr9	127933364	-	PPM1E	chr17	57033007	+
5UTR-3CDS	ENST00000373546	ENST00000308249		ChiTaRS3.1			DA323019	PPP6C	chr9	127933364	-	PPM1E	chr17	57033007	+
intron-5UTR	ENST00000353411	ENST00000248553		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-intron	ENST00000353411	ENST00000429938		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-5UTR	ENST00000522552	ENST00000248553		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-intron	ENST00000522552	ENST00000429938		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
5CDS-5UTR	ENST00000521216	ENST00000248553		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
5CDS-intron	ENST00000521216	ENST00000429938		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-5UTR	ENST00000517625	ENST00000248553		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-intron	ENST00000517625	ENST00000429938		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-5UTR	ENST00000522855	ENST00000248553		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-intron	ENST00000522855	ENST00000429938		ChiTaRS3.1			AJ710478	SKP1	chr5	133496716	-	HSPB1	chr7	75932016	+
intron-3CDS	ENST00000366595	ENST00000380649		ChiTaRS3.1			AI110722	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3CDS	ENST00000366595	ENST00000457468		ChiTaRS3.1			AI110722	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-intron	ENST00000366595	ENST00000461025		ChiTaRS3.1			AI110722	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3CDS	ENST00000264187	ENST00000380649		ChiTaRS3.1			AI110722	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3CDS	ENST00000264187	ENST00000457468		ChiTaRS3.1			AI110722	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-intron	ENST00000264187	ENST00000461025		ChiTaRS3.1			AI110722	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-intron	ENST00000261182	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000261182	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000393263	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000393263	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000431879	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000431879	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000547773	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000547773	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000544816	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000544816	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000542344	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000542344	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000535020	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000535020	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000549596	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000549596	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000547993	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000547993	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000552342	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000552342	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000548044	ENST00000396213		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
intron-intron	ENST00000548044	ENST00000280706		ChiTaRS3.1			T05071	NAP1L1	chr12	76448818	-	LDHAL6A	chr11	18494974	-
In-frame	ENST00000535622	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000535622	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000535622	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000400246	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000400246	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000400246	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000266091	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000266091	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000266091	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
Frame-shit	ENST00000382105	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000382105	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000382105	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000400249	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000400249	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000400249	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000382112	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000382112	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000382112	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000382111	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000382111	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000382111	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000400248	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000400248	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000400248	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-3CDS	ENST00000494060	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-intron	ENST00000494060	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-intron	ENST00000494060	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-3CDS	ENST00000536766	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-intron	ENST00000536766	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-intron	ENST00000536766	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-3CDS	ENST00000400242	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-intron	ENST00000400242	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-intron	ENST00000400242	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
In-frame	ENST00000539165	ENST00000262738		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000539165	ENST00000395964		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
5CDS-intron	ENST00000539165	ENST00000497509		ChiTaRS3.1			BF845393	DEPDC5	chr22	32275603	+	CELSR1	chr22	46792627	-
intron-3UTR	ENST00000284268	ENST00000394555		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000284268	ENST00000394554		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000284268	ENST00000424836		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-intron	ENST00000284268	ENST00000355426		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-intron	ENST00000284268	ENST00000497698		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000535119	ENST00000394555		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000535119	ENST00000394554		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000535119	ENST00000424836		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-intron	ENST00000535119	ENST00000355426		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-intron	ENST00000535119	ENST00000497698		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000503939	ENST00000394555		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000503939	ENST00000394554		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3UTR	ENST00000503939	ENST00000424836		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-intron	ENST00000503939	ENST00000355426		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-intron	ENST00000503939	ENST00000497698		ChiTaRS3.1			EB387503	ANKH	chr5	14769267	-	EFEMP1	chr2	56093851	-
intron-3CDS	ENST00000452400	ENST00000378509		ChiTaRS3.1			AW979049	NCOA2	chr8	71218596	-	SLC35B4	chr7	133986549	-
intron-intron	ENST00000452400	ENST00000466599		ChiTaRS3.1			AW979049	NCOA2	chr8	71218596	-	SLC35B4	chr7	133986549	-
intron-3CDS	ENST00000267974	ENST00000378509		ChiTaRS3.1			AW979049	NCOA2	chr8	71218596	-	SLC35B4	chr7	133986549	-
intron-intron	ENST00000267974	ENST00000466599		ChiTaRS3.1			AW979049	NCOA2	chr8	71218596	-	SLC35B4	chr7	133986549	-
intron-3CDS	ENST00000524223	ENST00000378509		ChiTaRS3.1			AW979049	NCOA2	chr8	71218596	-	SLC35B4	chr7	133986549	-
intron-intron	ENST00000524223	ENST00000466599		ChiTaRS3.1			AW979049	NCOA2	chr8	71218596	-	SLC35B4	chr7	133986549	-
intron-intron	ENST00000607016	ENST00000507668		ChiTaRS3.1			AW954850	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000512972		ChiTaRS3.1			AW954850	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000509193		ChiTaRS3.1			AW954850	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000512721		ChiTaRS3.1			AW954850	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000513907		ChiTaRS3.1			AW954850	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-3CDS	ENST00000560410	ENST00000520552		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000335659		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519597		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000520311		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519316		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000560410	ENST00000524319		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520552		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000335659		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519597		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520311		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519316		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000216802	ENST00000524319		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520552		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000335659		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519597		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520311		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519316		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000471700	ENST00000524319		ChiTaRS3.1			AV646791	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
5CDS-intron	ENST00000588240	ENST00000513238		ChiTaRS3.1			AV752989	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000588240	ENST00000307428		ChiTaRS3.1			AV752989	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000513238		ChiTaRS3.1			AV752989	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000307428		ChiTaRS3.1			AV752989	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000513238		ChiTaRS3.1			AV752989	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000307428		ChiTaRS3.1			AV752989	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
intron-5UTR	ENST00000335351	ENST00000438552		ChiTaRS3.1			BE252218	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000335351	ENST00000381342		ChiTaRS3.1			BE252218	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000335351	ENST00000339610		ChiTaRS3.1			BE252218	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000438552		ChiTaRS3.1			BE252218	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000381342		ChiTaRS3.1			BE252218	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000339610		ChiTaRS3.1			BE252218	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
3UTR-intron	ENST00000392259	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000392259	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000392259	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-3UTR	ENST00000392259	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000392266	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000392266	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000392266	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-3UTR	ENST00000392266	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000264274	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000264274	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000264274	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-3UTR	ENST00000264274	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000432109	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000432109	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000432109	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-3UTR	ENST00000432109	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000264275	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000264275	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000264275	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-3UTR	ENST00000264275	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000392258	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000392258	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000392258	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-3UTR	ENST00000392258	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000490682	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000490682	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-intron	ENST00000490682	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-3UTR	ENST00000490682	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000358485	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000358485	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000358485	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-3UTR	ENST00000358485	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000323492	ENST00000371687		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000323492	ENST00000543648		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-intron	ENST00000323492	ENST00000490164		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
3UTR-3UTR	ENST00000323492	ENST00000336126		ChiTaRS3.1			AF422925	CASP8	chr2	202151482	+	PCGF5	chr10	93042097	+
intron-3CDS	ENST00000451940	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000451940	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000451940	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000456104	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000456104	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000456104	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000433530	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000433530	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000433530	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000447424	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000447424	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000447424	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000433920	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000433920	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000433920	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000446751	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000446751	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000446751	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000420424	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000420424	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000420424	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000413722	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000413722	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000413722	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000417860	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000417860	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000417860	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000413961	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000413961	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000413961	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000458739	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000458739	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000458739	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000366446	ENST00000388968		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000366446	ENST00000345042		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-intron	ENST00000366446	ENST00000544407		ChiTaRS3.1			EG328792	NUTM2A-AS1	chr10	88993327	+	HSPD1	chr2	198352716	-
intron-3CDS	ENST00000314994	ENST00000262301		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-3CDS	ENST00000314994	ENST00000399843		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-intron	ENST00000314994	ENST00000543238		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-5UTR	ENST00000314994	ENST00000568897		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-intron	ENST00000314994	ENST00000568268		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-3UTR	ENST00000314994	ENST00000539379		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-3CDS	ENST00000567035	ENST00000262301		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-3CDS	ENST00000567035	ENST00000399843		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-intron	ENST00000567035	ENST00000543238		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-5UTR	ENST00000567035	ENST00000568897		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-intron	ENST00000567035	ENST00000568268		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
intron-3UTR	ENST00000567035	ENST00000539379		ChiTaRS3.1			DA922556	CENPBD1	chr16	90039174	+	LMF1	chr16	961081	-
Frame-shit	ENST00000395811	ENST00000331825		ChiTaRS3.1			AI583347	MPRIP	chr17	17062204	+	FTL	chr19	49469853	+
Frame-shit	ENST00000444976	ENST00000331825		ChiTaRS3.1			AI583347	MPRIP	chr17	17062204	+	FTL	chr19	49469853	+
Frame-shit	ENST00000395804	ENST00000331825		ChiTaRS3.1			AI583347	MPRIP	chr17	17062204	+	FTL	chr19	49469853	+
Frame-shit	ENST00000341712	ENST00000331825		ChiTaRS3.1			AI583347	MPRIP	chr17	17062204	+	FTL	chr19	49469853	+
intron-3CDS	ENST00000395806	ENST00000331825		ChiTaRS3.1			AI583347	MPRIP	chr17	17062204	+	FTL	chr19	49469853	+
intron-3CDS	ENST00000395807	ENST00000331825		ChiTaRS3.1			AI583347	MPRIP	chr17	17062204	+	FTL	chr19	49469853	+
intron-intron	ENST00000521746	ENST00000249842		ChiTaRS3.1			DB165900	PLEKHA2	chr8	38831049	+	ISLR	chr15	74466906	+
intron-5UTR	ENST00000521746	ENST00000395118		ChiTaRS3.1			DB165900	PLEKHA2	chr8	38831049	+	ISLR	chr15	74466906	+
3UTR-intron	ENST00000420274	ENST00000249842		ChiTaRS3.1			DB165900	PLEKHA2	chr8	38831049	+	ISLR	chr15	74466906	+
3UTR-5UTR	ENST00000420274	ENST00000395118		ChiTaRS3.1			DB165900	PLEKHA2	chr8	38831049	+	ISLR	chr15	74466906	+
3UTR-intron	ENST00000388745	ENST00000249842		ChiTaRS3.1			DB165900	PLEKHA2	chr8	38831049	+	ISLR	chr15	74466906	+
3UTR-5UTR	ENST00000388745	ENST00000395118		ChiTaRS3.1			DB165900	PLEKHA2	chr8	38831049	+	ISLR	chr15	74466906	+
intron-3CDS	ENST00000409826	ENST00000449054		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000409826	ENST00000379238		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000409826	ENST00000360802		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000409826	ENST00000379239		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000409826	ENST00000539807		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000409826	ENST00000418786		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-intron	ENST00000409826	ENST00000379225		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-intron	ENST00000409826	ENST00000379235		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-intron	ENST00000409826	ENST00000480885		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-3CDS	ENST00000306406	ENST00000449054		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-3CDS	ENST00000306406	ENST00000379238		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-3CDS	ENST00000306406	ENST00000360802		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-3CDS	ENST00000306406	ENST00000379239		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-3CDS	ENST00000306406	ENST00000539807		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-3CDS	ENST00000306406	ENST00000418786		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-intron	ENST00000306406	ENST00000379225		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-intron	ENST00000306406	ENST00000379235		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
3UTR-intron	ENST00000306406	ENST00000480885		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000465296	ENST00000449054		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000465296	ENST00000379238		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000465296	ENST00000360802		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000465296	ENST00000379239		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000465296	ENST00000539807		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-3CDS	ENST00000465296	ENST00000418786		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-intron	ENST00000465296	ENST00000379225		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-intron	ENST00000465296	ENST00000379235		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
intron-intron	ENST00000465296	ENST00000480885		ChiTaRS3.1			BF884501	TMEM37	chr2	120195646	+	UBAP2	chr9	33933583	-
In-frame	ENST00000475243	ENST00000346872		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000475243	ENST00000394189		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000475243	ENST00000439167		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000475243	ENST00000535189		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000475243	ENST00000377944		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000377945		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000377952		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000377958		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000346243		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000350532		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000351680		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000467757		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000475243	ENST00000439016		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-5UTR	ENST00000475243	ENST00000583368		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000395802	ENST00000346872		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000395802	ENST00000394189		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000395802	ENST00000439167		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000395802	ENST00000535189		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
In-frame	ENST00000395802	ENST00000377944		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000377945		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000377952		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000377958		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000346243		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000350532		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000351680		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000467757		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-intron	ENST00000395802	ENST00000439016		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
5CDS-5UTR	ENST00000395802	ENST00000583368		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-3CDS	ENST00000265619	ENST00000346872		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-3CDS	ENST00000265619	ENST00000394189		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-3CDS	ENST00000265619	ENST00000439167		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-3CDS	ENST00000265619	ENST00000535189		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-3CDS	ENST00000265619	ENST00000377944		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000377945		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000377952		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000377958		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000346243		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000350532		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000351680		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000467757		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-intron	ENST00000265619	ENST00000439016		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
3UTR-5UTR	ENST00000265619	ENST00000583368		ChiTaRS3.1			XX000009	VAPB	chr20	56964573	+	IKZF3	chr17	37934022	-
intron-intron	ENST00000424094	ENST00000452313		ChiTaRS3.1			BQ891868	GNAS-AS1	chr20	57425026	-	NPIPB7	chr16	28846392	+
intron-intron	ENST00000598163	ENST00000452313		ChiTaRS3.1			BQ891868	GNAS-AS1	chr20	57425026	-	NPIPB7	chr16	28846392	+
intron-intron	ENST00000443966	ENST00000452313		ChiTaRS3.1			BQ891868	GNAS-AS1	chr20	57425026	-	NPIPB7	chr16	28846392	+
intron-3CDS	ENST00000553781	ENST00000589651		ChiTaRS3.1			AW303547	BCL2L2-PABPN1	chr14	23794994	-	BCAM	chr19	45322109	-
intron-3CDS	ENST00000553781	ENST00000270233		ChiTaRS3.1			AW303547	BCL2L2-PABPN1	chr14	23794994	-	BCAM	chr19	45322109	-
intron-3CDS	ENST00000557008	ENST00000589651		ChiTaRS3.1			AW303547	BCL2L2-PABPN1	chr14	23794994	-	BCAM	chr19	45322109	-
intron-3CDS	ENST00000557008	ENST00000270233		ChiTaRS3.1			AW303547	BCL2L2-PABPN1	chr14	23794994	-	BCAM	chr19	45322109	-
intron-3CDS	ENST00000312239	ENST00000324460		ChiTaRS3.1			CB149189	HP1BP3	chr1	21100508	-	HSPA5	chr9	127999201	-
intron-3CDS	ENST00000487117	ENST00000324460		ChiTaRS3.1			CB149189	HP1BP3	chr1	21100508	-	HSPA5	chr9	127999201	-
intron-3CDS	ENST00000375000	ENST00000324460		ChiTaRS3.1			CB149189	HP1BP3	chr1	21100508	-	HSPA5	chr9	127999201	-
intron-3CDS	ENST00000375003	ENST00000324460		ChiTaRS3.1			CB149189	HP1BP3	chr1	21100508	-	HSPA5	chr9	127999201	-
intron-5UTR	ENST00000426174	ENST00000527986		ChiTaRS3.1			AI299228	TCTN2	chr12	124192678	-	WAC-AS1	chr10	28812669	+
intron-5UTR	ENST00000426174	ENST00000528337		ChiTaRS3.1			AI299228	TCTN2	chr12	124192678	-	WAC-AS1	chr10	28812669	+
3UTR-5UTR	ENST00000303372	ENST00000527986		ChiTaRS3.1			AI299228	TCTN2	chr12	124192678	-	WAC-AS1	chr10	28812669	+
3UTR-5UTR	ENST00000303372	ENST00000528337		ChiTaRS3.1			AI299228	TCTN2	chr12	124192678	-	WAC-AS1	chr10	28812669	+
5UTR-5UTR	ENST00000450314	ENST00000380599		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
5UTR-5UTR	ENST00000450314	ENST00000311403		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000551288	ENST00000380599		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000551288	ENST00000311403		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
5UTR-5UTR	ENST00000440007	ENST00000380599		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
5UTR-5UTR	ENST00000440007	ENST00000311403		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000412075	ENST00000380599		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000412075	ENST00000311403		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000424371	ENST00000380599		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000424371	ENST00000311403		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000423419	ENST00000380599		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
intron-5UTR	ENST00000423419	ENST00000311403		ChiTaRS3.1			DB284250	EMX2OS	chr10	119301608	-	ZBTB4	chr17	7370647	-
In-frame	ENST00000297268	ENST00000359786		ChiTaRS3.1			BP285732	COL1A2	chr7	94033913	+	MYO1C	chr17	1381984	-
In-frame	ENST00000297268	ENST00000438665		ChiTaRS3.1			BP285732	COL1A2	chr7	94033913	+	MYO1C	chr17	1381984	-
In-frame	ENST00000297268	ENST00000575158		ChiTaRS3.1			BP285732	COL1A2	chr7	94033913	+	MYO1C	chr17	1381984	-
In-frame	ENST00000297268	ENST00000361007		ChiTaRS3.1			BP285732	COL1A2	chr7	94033913	+	MYO1C	chr17	1381984	-
In-frame	ENST00000297268	ENST00000545534		ChiTaRS3.1			BP285732	COL1A2	chr7	94033913	+	MYO1C	chr17	1381984	-
5CDS-5UTR	ENST00000297268	ENST00000573198		ChiTaRS3.1			BP285732	COL1A2	chr7	94033913	+	MYO1C	chr17	1381984	-
In-frame	ENST00000418917	ENST00000389048		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000418917	ENST00000431873		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000418917	ENST00000498037		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
In-frame	ENST00000490574	ENST00000389048		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000490574	ENST00000431873		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000490574	ENST00000498037		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
In-frame	ENST00000240851	ENST00000389048		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000240851	ENST00000431873		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000240851	ENST00000498037		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
In-frame	ENST00000476228	ENST00000389048		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000476228	ENST00000431873		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
5CDS-intron	ENST00000476228	ENST00000498037		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
intron-3CDS	ENST00000481203	ENST00000389048		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
intron-intron	ENST00000481203	ENST00000431873		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
intron-intron	ENST00000481203	ENST00000498037		ChiTaRS3.1			AF143407	TFG	chr3	100451516	+	ALK	chr2	29446397	-
In-frame	ENST00000415083	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000415083	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000415083	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542420	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542743	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000539849	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000269137	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000545952	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000336777		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000337502		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-5UTR	ENST00000585241	ENST00000476392		ChiTaRS3.1			S79332	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3UTR	ENST00000344824	ENST00000286760		ChiTaRS3.1			CR736824	TPM4	chr19	16212926	+	WHAMM	chr15	83503015	+
intron-3UTR	ENST00000538887	ENST00000286760		ChiTaRS3.1			CR736824	TPM4	chr19	16212926	+	WHAMM	chr15	83503015	+
3UTR-3UTR	ENST00000300933	ENST00000286760		ChiTaRS3.1			CR736824	TPM4	chr19	16212926	+	WHAMM	chr15	83503015	+
intron-3UTR	ENST00000591645	ENST00000286760		ChiTaRS3.1			CR736824	TPM4	chr19	16212926	+	WHAMM	chr15	83503015	+
5CDS-intron	ENST00000420323	ENST00000399231		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
5CDS-intron	ENST00000420323	ENST00000356338		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
5CDS-intron	ENST00000420323	ENST00000358212		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
5CDS-intron	ENST00000420323	ENST00000399233		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
5CDS-intron	ENST00000420323	ENST00000553916		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
intron-intron	ENST00000466628	ENST00000399231		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
intron-intron	ENST00000466628	ENST00000356338		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
intron-intron	ENST00000466628	ENST00000358212		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
intron-intron	ENST00000466628	ENST00000399233		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
intron-intron	ENST00000466628	ENST00000553916		ChiTaRS3.1			BI025408	DNAH1	chr3	52426981	+	MYO5A	chr15	52706316	-
In-frame	ENST00000373644	ENST00000534358		ChiTaRS3.1			FM165198	TET1	chr10	70446464	+	KMT2A	chr11	118352428	+
In-frame	ENST00000373644	ENST00000389506		ChiTaRS3.1			FM165198	TET1	chr10	70446464	+	KMT2A	chr11	118352428	+
In-frame	ENST00000373644	ENST00000354520		ChiTaRS3.1			FM165198	TET1	chr10	70446464	+	KMT2A	chr11	118352428	+
5CDS-intron	ENST00000373644	ENST00000420751		ChiTaRS3.1			FM165198	TET1	chr10	70446464	+	KMT2A	chr11	118352428	+
intron-intron	ENST00000340437	ENST00000429029		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000340437	ENST00000262177		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000340437	ENST00000452797		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000340437	ENST00000443280		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000340437	ENST00000494267		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000394888	ENST00000429029		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000394888	ENST00000262177		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000394888	ENST00000452797		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000394888	ENST00000443280		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000394888	ENST00000494267		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000439958	ENST00000429029		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000439958	ENST00000262177		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000439958	ENST00000452797		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000439958	ENST00000443280		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000439958	ENST00000494267		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000494016	ENST00000429029		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000494016	ENST00000262177		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000494016	ENST00000452797		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000494016	ENST00000443280		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000494016	ENST00000494267		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000448745	ENST00000429029		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000448745	ENST00000262177		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000448745	ENST00000452797		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000448745	ENST00000443280		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000448745	ENST00000494267		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000541963	ENST00000429029		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000541963	ENST00000262177		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-3UTR	ENST00000541963	ENST00000452797		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000541963	ENST00000443280		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-intron	ENST00000541963	ENST00000494267		ChiTaRS3.1			W74024	CPSF7	chr11	61171910	-	DNAJB6	chr7	157209533	+
intron-5UTR	ENST00000230050	ENST00000339697		ChiTaRS3.1			DA436799	RPS12	chr6	133138012	+	SERINC1	chr6	122792957	-
In-frame	ENST00000377604	ENST00000315684		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
5CDS-intron	ENST00000377604	ENST00000581671		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
In-frame	ENST00000329236	ENST00000315684		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
5CDS-intron	ENST00000329236	ENST00000581671		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
In-frame	ENST00000345781	ENST00000315684		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
5CDS-intron	ENST00000345781	ENST00000581671		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
intron-3CDS	ENST00000478410	ENST00000315684		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
intron-intron	ENST00000478410	ENST00000581671		ChiTaRS3.1			DA827897	RBM10	chrX	47006898	+	CTC1	chr17	8135355	-
5UTR-5UTR	ENST00000303924	ENST00000316981		ChiTaRS3.1			AF221548	HAS2	chr8	122653093	-	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000303924	ENST00000423799		ChiTaRS3.1			AF221548	HAS2	chr8	122653093	-	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000303924	ENST00000429357		ChiTaRS3.1			AF221548	HAS2	chr8	122653093	-	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000303924	ENST00000519027		ChiTaRS3.1			AF221548	HAS2	chr8	122653093	-	PLAG1	chr8	57083750	-
5CDS-intron	ENST00000362512	ENST00000306006		ChiTaRS3.1			DA377695	RNU12	chr22	43011399	+	ZNF239	chr10	44070064	-
5CDS-intron	ENST00000362512	ENST00000374446		ChiTaRS3.1			DA377695	RNU12	chr22	43011399	+	ZNF239	chr10	44070064	-
5CDS-intron	ENST00000362512	ENST00000426961		ChiTaRS3.1			DA377695	RNU12	chr22	43011399	+	ZNF239	chr10	44070064	-
5CDS-intron	ENST00000362512	ENST00000535642		ChiTaRS3.1			DA377695	RNU12	chr22	43011399	+	ZNF239	chr10	44070064	-
5CDS-intron	ENST00000362512	ENST00000491188		ChiTaRS3.1			DA377695	RNU12	chr22	43011399	+	ZNF239	chr10	44070064	-
intron-3UTR	ENST00000402038	ENST00000353172		ChiTaRS3.1			BF676418	PARG	chr10	51562429	+	KCTD14	chr11	77726903	-
intron-intron	ENST00000402038	ENST00000533144		ChiTaRS3.1			BF676418	PARG	chr10	51562429	+	KCTD14	chr11	77726903	-
intron-3UTR	ENST00000492350	ENST00000353172		ChiTaRS3.1			BF676418	PARG	chr10	51562429	+	KCTD14	chr11	77726903	-
intron-intron	ENST00000492350	ENST00000533144		ChiTaRS3.1			BF676418	PARG	chr10	51562429	+	KCTD14	chr11	77726903	-
In-frame	ENST00000507955	ENST00000382582		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
In-frame	ENST00000507955	ENST00000355994		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
In-frame	ENST00000507955	ENST00000397875		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
In-frame	ENST00000507955	ENST00000397866		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
In-frame	ENST00000507955	ENST00000397865		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000527041		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000359645		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000528160		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000397869		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000354542		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000526111		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000580402		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000579129		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000578193		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000397863		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000397860		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5CDS-intron	ENST00000507955	ENST00000487778		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-3CDS	ENST00000506965	ENST00000382582		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-3CDS	ENST00000506965	ENST00000355994		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-3CDS	ENST00000506965	ENST00000397875		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-3CDS	ENST00000506965	ENST00000397866		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-3CDS	ENST00000506965	ENST00000397865		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000527041		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000359645		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000528160		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000397869		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000354542		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000526111		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000580402		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000579129		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000578193		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000397863		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000397860		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
5UTR-intron	ENST00000506965	ENST00000487778		ChiTaRS3.1			DA267742	DDX41	chr5	176943725	-	MBP	chr18	74696851	-
intron-3CDS	ENST00000293872	ENST00000326799		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000293872	ENST00000376016		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000293872	ENST00000375972		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-5UTR	ENST00000293872	ENST00000463270		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-intron	ENST00000293872	ENST00000477432		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000337351	ENST00000326799		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000337351	ENST00000376016		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000337351	ENST00000375972		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-5UTR	ENST00000337351	ENST00000463270		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-intron	ENST00000337351	ENST00000477432		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000397783	ENST00000326799		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000397783	ENST00000376016		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000397783	ENST00000375972		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-5UTR	ENST00000397783	ENST00000463270		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-intron	ENST00000397783	ENST00000477432		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000397780	ENST00000326799		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000397780	ENST00000376016		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000397780	ENST00000375972		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-5UTR	ENST00000397780	ENST00000463270		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-intron	ENST00000397780	ENST00000477432		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000494366	ENST00000326799		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000494366	ENST00000376016		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-3CDS	ENST00000494366	ENST00000375972		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-5UTR	ENST00000494366	ENST00000463270		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
intron-intron	ENST00000494366	ENST00000477432		ChiTaRS3.1			AW015422	LUC7L	chr16	316012	-	YME1L1	chr10	27412576	+
3UTR-3CDS	ENST00000316448	ENST00000343053		ChiTaRS3.1			BE045830	CALR	chr19	13055006	-	NELFB	chr9	140167021	-
In-frame	ENST00000313654	ENST00000254976		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000313654	ENST00000304886		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
5CDS-3UTR	ENST00000313654	ENST00000495883		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000399516	ENST00000254976		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000399516	ENST00000304886		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
5CDS-3UTR	ENST00000399516	ENST00000495883		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000269217	ENST00000254976		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000269217	ENST00000304886		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
5CDS-3UTR	ENST00000269217	ENST00000495883		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000587184	ENST00000254976		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
In-frame	ENST00000587184	ENST00000304886		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
5CDS-3UTR	ENST00000587184	ENST00000495883		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
3UTR-3CDS	ENST00000588770	ENST00000254976		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
3UTR-3CDS	ENST00000588770	ENST00000304886		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
3UTR-3UTR	ENST00000588770	ENST00000495883		ChiTaRS3.1			AV726363	LAMA3	chr18	21489176	+	SNAP25	chr20	10286843	+
intron-3CDS	ENST00000439817	ENST00000233630		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-5UTR	ENST00000439817	ENST00000480844		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-3CDS	ENST00000361464	ENST00000233630		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-5UTR	ENST00000361464	ENST00000480844		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-3CDS	ENST00000482611	ENST00000233630		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-5UTR	ENST00000482611	ENST00000480844		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-3CDS	ENST00000357797	ENST00000233630		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-5UTR	ENST00000357797	ENST00000480844		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-3CDS	ENST00000370094	ENST00000233630		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-5UTR	ENST00000370094	ENST00000480844		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-3CDS	ENST00000419011	ENST00000233630		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
intron-5UTR	ENST00000419011	ENST00000480844		ChiTaRS3.1			BF001663	MGEA5	chr10	103577753	-	PCGF1	chr2	74732480	-
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM741416	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-3CDS	ENST00000345136	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000345136	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000345136	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000357649	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000357649	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000357649	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000354589	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000354589	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000354589	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000398774	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000398774	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000398774	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000322810	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000322810	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000322810	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000354958	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000354958	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000354958	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000356346	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000356346	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000356346	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000436759	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000436759	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000436759	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-3CDS	ENST00000527096	ENST00000309295		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000527096	ENST00000529596		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
intron-intron	ENST00000527096	ENST00000533364		ChiTaRS3.1			CD365340	PLEC	chr8	144989855	+	EHBP1L1	chr11	65350490	-
5CDS-3UTR	ENST00000421699	ENST00000419308		ChiTaRS3.1			AK075055	GOLGA2	chr9	131023454	-	FOXA2	chr20	22562481	-
5CDS-3UTR	ENST00000421699	ENST00000377115		ChiTaRS3.1			AK075055	GOLGA2	chr9	131023454	-	FOXA2	chr20	22562481	-
5CDS-3UTR	ENST00000609374	ENST00000419308		ChiTaRS3.1			AK075055	GOLGA2	chr9	131023454	-	FOXA2	chr20	22562481	-
5CDS-3UTR	ENST00000609374	ENST00000377115		ChiTaRS3.1			AK075055	GOLGA2	chr9	131023454	-	FOXA2	chr20	22562481	-
intron-3UTR	ENST00000490628	ENST00000419308		ChiTaRS3.1			AK075055	GOLGA2	chr9	131023454	-	FOXA2	chr20	22562481	-
intron-3UTR	ENST00000490628	ENST00000377115		ChiTaRS3.1			AK075055	GOLGA2	chr9	131023454	-	FOXA2	chr20	22562481	-
Frame-shit	ENST00000336576	ENST00000261182		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
Frame-shit	ENST00000336576	ENST00000393263		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000336576	ENST00000431879		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000336576	ENST00000547773		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000336576	ENST00000544816		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000336576	ENST00000542344		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000336576	ENST00000535020		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000336576	ENST00000549596		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000336576	ENST00000547993		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000336576	ENST00000552342		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000336576	ENST00000548044		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
Frame-shit	ENST00000392086	ENST00000261182		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
Frame-shit	ENST00000392086	ENST00000393263		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000392086	ENST00000431879		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000392086	ENST00000547773		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000392086	ENST00000544816		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000392086	ENST00000542344		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000392086	ENST00000535020		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-5UTR	ENST00000392086	ENST00000549596		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000392086	ENST00000547993		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000392086	ENST00000552342		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
5CDS-intron	ENST00000392086	ENST00000548044		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-3CDS	ENST00000463463	ENST00000261182		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-3CDS	ENST00000463463	ENST00000393263		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-intron	ENST00000463463	ENST00000431879		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-intron	ENST00000463463	ENST00000547773		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-5UTR	ENST00000463463	ENST00000544816		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-5UTR	ENST00000463463	ENST00000542344		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-5UTR	ENST00000463463	ENST00000535020		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-5UTR	ENST00000463463	ENST00000549596		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-intron	ENST00000463463	ENST00000547993		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-intron	ENST00000463463	ENST00000552342		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
3UTR-intron	ENST00000463463	ENST00000548044		ChiTaRS3.1			BF967465	DNAJB2	chr2	220146727	+	NAP1L1	chr12	76453630	-
intron-intron	ENST00000502271	ENST00000517298		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000502271	ENST00000321764		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000504924	ENST00000517298		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000504924	ENST00000321764		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000510591	ENST00000517298		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000510591	ENST00000321764		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000507646	ENST00000517298		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-intron	ENST00000507646	ENST00000321764		ChiTaRS3.1			DA826988	ARL15	chr5	53341146	-	CA13	chr8	86351087	+
intron-3CDS	ENST00000360743	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000360743	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000360743	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000360743	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000360743	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000358039	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000358039	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000358039	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000358039	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000358039	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000544629	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000544629	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000544629	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000544629	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000544629	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369669	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369669	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369669	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369669	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369669	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000490067	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000490067	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000490067	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000490067	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000490067	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369668	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369668	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369668	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369668	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369668	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369666	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369666	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369666	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369666	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000369666	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000343210	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000343210	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000343210	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000343210	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000343210	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000538187	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000538187	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000538187	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000538187	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000538187	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000463235	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000463235	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000463235	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000463235	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000463235	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000543570	ENST00000399231		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000543570	ENST00000356338		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000543570	ENST00000358212		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000543570	ENST00000399233		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
intron-3CDS	ENST00000543570	ENST00000553916		ChiTaRS3.1			DA313048	ST7L	chr1	113161734	-	MYO5A	chr15	52702639	-
5CDS-intron	ENST00000200453	ENST00000375651		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000458062		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000608703		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000430065		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000422919		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000441618		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000449876		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000433487		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000452298		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000400040		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000383389		ChiTaRS3.1			AV702122	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
3UTR-3CDS	ENST00000523944	ENST00000382456		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000523944	ENST00000411763		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000523944	ENST00000292807		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000523944	ENST00000439647		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-intron	ENST00000523944	ENST00000461733		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000262105	ENST00000382456		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000262105	ENST00000411763		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000262105	ENST00000292807		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-3CDS	ENST00000262105	ENST00000439647		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
3UTR-intron	ENST00000262105	ENST00000461733		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
intron-3CDS	ENST00000518680	ENST00000382456		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
intron-3CDS	ENST00000518680	ENST00000411763		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
intron-3CDS	ENST00000518680	ENST00000292807		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
intron-3CDS	ENST00000518680	ENST00000439647		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
intron-intron	ENST00000518680	ENST00000461733		ChiTaRS3.1			CX787701	MCM4	chr8	48889373	+	AP2M1	chr3	183894805	+
intron-3CDS	ENST00000395388	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000395388	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000395388	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000374982	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000374982	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000374982	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000383127	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000383127	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000383127	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000459705	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000459705	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000459705	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000434866	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000434866	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000434866	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000416883	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000416883	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000416883	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000481943	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000481943	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000481943	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000411505	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000411505	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000411505	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000414698	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000414698	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000414698	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000546379	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000546379	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000546379	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000493431	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000493431	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000493431	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000418111	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000418111	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000418111	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000383259	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000383259	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000383259	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000551750	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000551750	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000551750	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000461633	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000461633	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000461633	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000383258	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000383258	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000383258	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000442960	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000442960	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000442960	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000549531	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000549531	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000549531	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000482781	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000482781	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000482781	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000415767	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000415767	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000415767	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3CDS	ENST00000411524	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3CDS	ENST00000411524	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3UTR	ENST00000411524	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3CDS	ENST00000553193	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3CDS	ENST00000553193	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3UTR	ENST00000553193	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000498597	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3CDS	ENST00000498597	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000498597	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3CDS	ENST00000427753	ENST00000369409		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3CDS	ENST00000427753	ENST00000369407		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
3UTR-3UTR	ENST00000427753	ENST00000482968		ChiTaRS3.1			BE844016	HLA-DRA	chr6	3759271	+	PHGDH	chr1	120286659	+
intron-3UTR	ENST00000538442	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000538442	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000538442	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000399150	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000399150	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000399150	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000252229	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000252229	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000252229	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000427115	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000427115	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000427115	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000442104	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000442104	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000442104	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000451603	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000451603	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000451603	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000546706	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000546706	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000546706	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000438954	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000438954	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000438954	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000458032	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000458032	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000458032	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000551950	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000551950	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000551950	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000437651	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000437651	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000437651	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000383514	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000383514	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000383514	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000551608	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000551608	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000551608	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000436531	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000436531	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000436531	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000436655	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000436655	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000436655	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000547574	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000547574	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000547574	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000400313	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000400313	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000400313	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000428416	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000428416	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000428416	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000549014	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000549014	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000549014	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000428059	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000428059	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000428059	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
3UTR-3UTR	ENST00000451789	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
3UTR-intron	ENST00000451789	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
3UTR-intron	ENST00000451789	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
3UTR-3UTR	ENST00000443156	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
3UTR-intron	ENST00000443156	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
3UTR-intron	ENST00000443156	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000551960	ENST00000296328		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000551960	ENST00000428095		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-intron	ENST00000551960	ENST00000535858		ChiTaRS3.1			BU684700	MICB	chr6	2809361	-	UBXN7	chr3	196080650	+
intron-3UTR	ENST00000602540	ENST00000586178		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-3UTR	ENST00000602540	ENST00000415868		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-intron	ENST00000602540	ENST00000376381		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-intron	ENST00000602540	ENST00000593259		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-3UTR	ENST00000266671	ENST00000586178		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-3UTR	ENST00000266671	ENST00000415868		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-intron	ENST00000266671	ENST00000376381		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-intron	ENST00000266671	ENST00000593259		ChiTaRS3.1			BG254814	PHLDA1	chr12	76422309	-	MBTD1	chr17	49255731	-
intron-3CDS	ENST00000223129	ENST00000393324		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000223129	ENST00000359636		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000223129	ENST00000543262		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000223129	ENST00000323418		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-intron	ENST00000223129	ENST00000525957		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000406109	ENST00000393324		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000406109	ENST00000359636		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000406109	ENST00000543262		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000406109	ENST00000323418		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-intron	ENST00000406109	ENST00000525957		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000396682	ENST00000393324		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000396682	ENST00000359636		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000396682	ENST00000543262		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000396682	ENST00000323418		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-intron	ENST00000396682	ENST00000525957		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000401447	ENST00000393324		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000401447	ENST00000359636		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000401447	ENST00000543262		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000401447	ENST00000323418		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-intron	ENST00000401447	ENST00000525957		ChiTaRS3.1			DA168920	RPA3	chr7	7841375	+	ME3	chr11	86270867	-
intron-3CDS	ENST00000204726	ENST00000270625		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000204726	ENST00000596873		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000204726	ENST00000594493		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000204726	ENST00000599561		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000450791	ENST00000270625		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000450791	ENST00000596873		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000450791	ENST00000594493		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000450791	ENST00000599561		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000456883	ENST00000270625		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000456883	ENST00000596873		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000456883	ENST00000594493		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000456883	ENST00000599561		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000537452	ENST00000270625		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000537452	ENST00000596873		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000537452	ENST00000594493		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000537452	ENST00000599561		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000545875	ENST00000270625		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000545875	ENST00000596873		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000545875	ENST00000594493		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000545875	ENST00000599561		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000534967	ENST00000270625		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000534967	ENST00000596873		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000534967	ENST00000594493		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
intron-3CDS	ENST00000534967	ENST00000599561		ChiTaRS3.1			CF130421	GOLGA3	chr12	133402787	-	RPS11	chr19	50001201	+
5CDS-3UTR	ENST00000331825	ENST00000397898		ChiTaRS3.1			CA448614	FTL	chr19	49469908	-	SUMO3	chr21	46226193	+
5CDS-3UTR	ENST00000331825	ENST00000332859		ChiTaRS3.1			CA448614	FTL	chr19	49469908	-	SUMO3	chr21	46226193	+
5CDS-5UTR	ENST00000331825	ENST00000479153		ChiTaRS3.1			CA448614	FTL	chr19	49469908	-	SUMO3	chr21	46226193	+
5CDS-intron	ENST00000331825	ENST00000411651		ChiTaRS3.1			CA448614	FTL	chr19	49469908	-	SUMO3	chr21	46226193	+
5CDS-intron	ENST00000331825	ENST00000397893		ChiTaRS3.1			CA448614	FTL	chr19	49469908	-	SUMO3	chr21	46226193	+
intron-3UTR	ENST00000374759	ENST00000549114		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000374759	ENST00000341413		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000374759	ENST00000564537		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000374759	ENST00000561546		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000374759	ENST00000564545		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000374759	ENST00000389703		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000374759	ENST00000569604		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000288439	ENST00000549114		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000288439	ENST00000341413		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000288439	ENST00000564537		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000288439	ENST00000561546		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000288439	ENST00000564545		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000288439	ENST00000389703		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000288439	ENST00000569604		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000546352	ENST00000549114		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000546352	ENST00000341413		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000546352	ENST00000564537		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000546352	ENST00000561546		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000546352	ENST00000564545		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000546352	ENST00000389703		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-intron	ENST00000546352	ENST00000569604		ChiTaRS3.1			AK128330	SLC38A10	chr17	79220415	-	HAGHL	chr16	779428	+
intron-3UTR	ENST00000361157	ENST00000338483		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000361157	ENST00000538999		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000361157	ENST00000538320		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000361157	ENST00000426621		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000361157	ENST00000407965		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000339145	ENST00000338483		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000339145	ENST00000538999		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000339145	ENST00000538320		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000339145	ENST00000426621		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000339145	ENST00000407965		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000362020	ENST00000338483		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000362020	ENST00000538999		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000362020	ENST00000538320		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000362020	ENST00000426621		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000362020	ENST00000407965		ChiTaRS3.1			CD367888	IFI6	chr1	27992686	+	MAFF	chr22	38612267	-
intron-3UTR	ENST00000429829	ENST00000534336		ChiTaRS3.1			AW903458	XIST	chrX	73071596	-	MALAT1	chr11	65267043	-
3UTR-3CDS	ENST00000431877	ENST00000282470		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000431877	ENST00000418378		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000431877	ENST00000503414		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000320370	ENST00000282470		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000320370	ENST00000418378		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000320370	ENST00000503414		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000409001	ENST00000282470		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000409001	ENST00000418378		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000409001	ENST00000503414		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
intron-3CDS	ENST00000428267	ENST00000282470		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
intron-3CDS	ENST00000428267	ENST00000418378		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
intron-3CDS	ENST00000428267	ENST00000503414		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000409136	ENST00000282470		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000409136	ENST00000418378		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
3UTR-3CDS	ENST00000409136	ENST00000503414		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
intron-3CDS	ENST00000467172	ENST00000282470		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
intron-3CDS	ENST00000467172	ENST00000418378		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
intron-3CDS	ENST00000467172	ENST00000503414		ChiTaRS3.1			AL046976	SSFA2	chr2	182795056	+	SPARCL1	chr4	88400609	-
In-frame	ENST00000519097	ENST00000439590		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000519097	ENST00000311111		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000519097	ENST00000584577		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
Frame-shit	ENST00000519097	ENST00000534490		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000519097	ENST00000533498		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000380036	ENST00000439590		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000380036	ENST00000311111		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000380036	ENST00000584577		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
Frame-shit	ENST00000380036	ENST00000534490		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000380036	ENST00000533498		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000406359	ENST00000439590		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000406359	ENST00000311111		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000406359	ENST00000584577		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
Frame-shit	ENST00000406359	ENST00000534490		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
In-frame	ENST00000406359	ENST00000533498		ChiTaRS3.1			BX101889	TEK	chr9	27190586	+	RPL38	chr17	72205325	+
intron-intron	ENST00000368395	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368395	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000338684	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000338684	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000438413	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000438413	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000457295	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000457295	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000462215	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000462215	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368392	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368392	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368393	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368393	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368390	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368390	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368396	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368396	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000343256	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000343256	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368398	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368398	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368389	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000368389	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000342482	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000342482	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000337604	ENST00000307751		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
intron-intron	ENST00000337604	ENST00000597803		ChiTaRS3.1			AW391727	MUC1	chr1	155161943	-	LGALS4	chr19	39293186	-
5CDS-5UTR	ENST00000392784	ENST00000237937		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000392784	ENST00000488164		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000392784	ENST00000376962		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000392784	ENST00000376960		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000392784	ENST00000343431		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-5UTR	ENST00000257548	ENST00000237937		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000257548	ENST00000488164		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000257548	ENST00000376962		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000257548	ENST00000376960		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
5CDS-intron	ENST00000257548	ENST00000343431		ChiTaRS3.1			CN367078	USP30	chr12	109495851	+	ZFAND5	chr9	74980146	-
intron-3CDS	ENST00000372583	ENST00000352456		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372583	ENST00000595018		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372583	ENST00000392006		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372583	ENST00000378215		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372583	ENST00000602130		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372583	ENST00000593587		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372583	ENST00000263367		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-intron	ENST00000372583	ENST00000594207		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000352456		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000595018		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000392006		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000378215		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000602130		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000593587		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000372584	ENST00000263367		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-intron	ENST00000372584	ENST00000594207		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000352456		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000595018		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000392006		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000378215		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000602130		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000593587		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000247584	ENST00000263367		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-intron	ENST00000247584	ENST00000594207		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000352456		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000595018		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000392006		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000378215		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000602130		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000593587		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000429157	ENST00000263367		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-intron	ENST00000429157	ENST00000594207		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000352456		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000595018		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000392006		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000378215		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000602130		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000593587		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-3CDS	ENST00000460604	ENST00000263367		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-intron	ENST00000460604	ENST00000594207		ChiTaRS3.1			BG393394	HIVEP3	chr1	42010775	-	HNRNPUL1	chr19	41808746	+
intron-intron	ENST00000440884	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000440884	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000440884	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000440884	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000440884	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000440884	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000440884	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000416682	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000429436	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000303622	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000216288	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000553942	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000335102	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000392882		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000358655		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000355338		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000344102		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000557135		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000556645		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000561071	ENST00000554084		ChiTaRS3.1			BM977906	MARK3	chr14	103964837	-	WARS	chr14	100835424	+
intron-intron	ENST00000329957	ENST00000418539		ChiTaRS3.1			DA968444	MOB2	chr11	1492561	-	BCYRN1	chrX	70520715	+
intron-intron	ENST00000526462	ENST00000418539		ChiTaRS3.1			DA968444	MOB2	chr11	1492561	-	BCYRN1	chrX	70520715	+
intron-3CDS	ENST00000344691	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000344691	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000344691	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000344691	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000325074	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000325074	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000325074	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000325074	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000437180	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000437180	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000437180	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000437180	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000300305	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000300305	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000300305	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000300305	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000399240	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000399240	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000399240	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000399240	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000486278	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000486278	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000486278	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000486278	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000494829	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000494829	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000494829	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000494829	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000358356	ENST00000240185		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-3CDS	ENST00000358356	ENST00000439080		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000358356	ENST00000315091		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
intron-intron	ENST00000358356	ENST00000480464		ChiTaRS3.1			S60998	RUNX1	chr21	36171711	-	TARDBP	chr1	11082634	+
In-frame	ENST00000404910	ENST00000346178		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000404910	ENST00000356638		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000404910	ENST00000534779		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000404910	ENST00000540933		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000404910	ENST00000534422		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000254661	ENST00000346178		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000254661	ENST00000356638		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000254661	ENST00000534779		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000254661	ENST00000540933		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000254661	ENST00000534422		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000409726	ENST00000346178		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000409726	ENST00000356638		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000409726	ENST00000534779		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000409726	ENST00000540933		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000409726	ENST00000534422		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000403885	ENST00000346178		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000403885	ENST00000356638		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000403885	ENST00000534779		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000403885	ENST00000540933		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000403885	ENST00000534422		ChiTaRS3.1			DA340619	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000409419	ENST00000459703		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409419	ENST00000393189		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409419	ENST00000244751		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409587	ENST00000459703		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409587	ENST00000393189		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409587	ENST00000244751		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
intron-intron	ENST00000594085	ENST00000459703		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
intron-intron	ENST00000594085	ENST00000393189		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
intron-intron	ENST00000594085	ENST00000244751		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409735	ENST00000459703		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409735	ENST00000393189		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409735	ENST00000244751		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000356508	ENST00000459703		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000356508	ENST00000393189		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000356508	ENST00000244751		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409281	ENST00000459703		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409281	ENST00000393189		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5CDS-intron	ENST00000409281	ENST00000244751		ChiTaRS3.1			BE699806	PLD3	chr19	40882570	+	CPNE5	chr6	36790319	-
5UTR-intron	ENST00000374464	ENST00000563679		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000325823		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000447912		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000535621		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000455313		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000396410		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000569715		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374464	ENST00000450288		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000563679		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000325823		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000447912		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000535621		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000455313		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000396410		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000569715		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
5UTR-intron	ENST00000374466	ENST00000450288		ChiTaRS3.1			CN418454	CSGALNACT2	chr10	43650420	+	PDXDC1	chr16	15228118	-
intron-3CDS	ENST00000476233	ENST00000300030		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000476233	ENST00000558779		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000476233	ENST00000380290		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000476233	ENST00000557835		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000476233	ENST00000559950		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-3CDS	ENST00000354667	ENST00000300030		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000354667	ENST00000558779		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000354667	ENST00000380290		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000354667	ENST00000557835		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000354667	ENST00000559950		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-3CDS	ENST00000356674	ENST00000300030		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000356674	ENST00000558779		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000356674	ENST00000380290		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000356674	ENST00000557835		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
intron-intron	ENST00000356674	ENST00000559950		ChiTaRS3.1			DT217282	HNRNPA2B1	chr7	26236533	-	FAM96A	chr15	64380949	-
Frame-shit	ENST00000224167	ENST00000591471		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000589218		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000544914		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000591417		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000592168		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000392153		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000589392		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000324411		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000591259		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000541583		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000591134		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000224167	ENST00000586897		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
Frame-shit	ENST00000371625	ENST00000591471		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000589218		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000544914		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000591417		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000592168		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000392153		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000589392		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000324411		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000591259		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000541583		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000591134		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-intron	ENST00000371625	ENST00000586897		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-3CDS	ENST00000460340	ENST00000591471		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000589218		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000544914		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000591417		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000592168		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000392153		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000589392		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000324411		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000591259		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000541583		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000591134		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
3UTR-intron	ENST00000460340	ENST00000586897		ChiTaRS3.1			DA811774	PTGDS	chr9	139873699	+	HKR1	chr19	37853722	+
5CDS-3UTR	ENST00000226574	ENST00000272117		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000226574	ENST00000429204		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-intron	ENST00000226574	ENST00000366784		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000394820	ENST00000272117		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000394820	ENST00000429204		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-intron	ENST00000394820	ENST00000366784		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000505458	ENST00000272117		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000505458	ENST00000429204		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-intron	ENST00000505458	ENST00000366784		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
intron-3UTR	ENST00000510638	ENST00000272117		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
intron-3UTR	ENST00000510638	ENST00000429204		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
intron-intron	ENST00000510638	ENST00000366784		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000600343	ENST00000272117		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-3UTR	ENST00000600343	ENST00000429204		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
5CDS-intron	ENST00000600343	ENST00000366784		ChiTaRS3.1			AW965410	NFKB1	chr4	103504106	+	ITPKB	chr1	226819743	-
intron-3UTR	ENST00000606975	ENST00000354185		ChiTaRS3.1			AX748129	RPL23AP53	chr8	195550	+	DDX21	chr10	70743978	+
intron-3UTR	ENST00000295822	ENST00000358015		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-intron	ENST00000295822	ENST00000416373		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-3UTR	ENST00000460117	ENST00000358015		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-intron	ENST00000460117	ENST00000416373		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-3UTR	ENST00000487522	ENST00000358015		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-intron	ENST00000487522	ENST00000416373		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-3UTR	ENST00000474096	ENST00000358015		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-intron	ENST00000474096	ENST00000416373		ChiTaRS3.1			AF262027	EIF5A2	chr3	170610215	-	RAD23B	chr9	110093684	+
intron-intron	ENST00000256062	ENST00000560302		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000256062	ENST00000394518		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000256062	ENST00000361243		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000256062	ENST00000560579		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000256062	ENST00000394510		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000551659	ENST00000560302		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000551659	ENST00000394518		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000551659	ENST00000361243		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000551659	ENST00000560579		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000551659	ENST00000394510		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000552618	ENST00000560302		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000552618	ENST00000394518		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000552618	ENST00000361243		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000552618	ENST00000560579		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000552618	ENST00000394510		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000319685	ENST00000560302		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000319685	ENST00000394518		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000319685	ENST00000361243		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000319685	ENST00000560579		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000319685	ENST00000394510		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000539277	ENST00000560302		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000539277	ENST00000394518		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000539277	ENST00000361243		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000539277	ENST00000560579		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000539277	ENST00000394510		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000381224	ENST00000560302		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000381224	ENST00000394518		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-intron	ENST00000381224	ENST00000361243		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000381224	ENST00000560579		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
intron-3UTR	ENST00000381224	ENST00000394510		ChiTaRS3.1			BF356164	TMTC1	chr12	29837849	-	AKAP13	chr15	86261346	+
5CDS-3UTR	ENST00000401722	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000228318	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000188376	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000551917	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000552981	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000551265	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000547534	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000549338	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000548847	ENST00000399816		ChiTaRS3.1			BC029403	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-5UTR	ENST00000344749	ENST00000396795		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000344749	ENST00000319770		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000344749	ENST00000396801		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000344749	ENST00000361959		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000344749	ENST00000355772		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000344749	ENST00000396799		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000262965	ENST00000396795		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000262965	ENST00000319770		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000262965	ENST00000396801		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000262965	ENST00000361959		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000262965	ENST00000355772		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000262965	ENST00000396799		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000453954	ENST00000396795		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000453954	ENST00000319770		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000453954	ENST00000396801		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000453954	ENST00000361959		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000453954	ENST00000355772		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000453954	ENST00000396799		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000395423	ENST00000396795		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000395423	ENST00000319770		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000395423	ENST00000396801		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000395423	ENST00000361959		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000395423	ENST00000355772		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000395423	ENST00000396799		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000588136	ENST00000396795		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000588136	ENST00000319770		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000588136	ENST00000396801		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000588136	ENST00000361959		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000588136	ENST00000355772		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
5CDS-5UTR	ENST00000588136	ENST00000396799		ChiTaRS3.1			EF613330	TCF3	chr19	1619110	-	ZNF384	chr12	6797393	-
intron-3CDS	ENST00000375431	ENST00000254799		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375431	ENST00000439371		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375431	ENST00000502323		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375431	ENST00000545193		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-intron	ENST00000375431	ENST00000508091		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000326039	ENST00000254799		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000326039	ENST00000439371		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000326039	ENST00000502323		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000326039	ENST00000545193		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-intron	ENST00000326039	ENST00000508091		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375430	ENST00000254799		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375430	ENST00000439371		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375430	ENST00000502323		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000375430	ENST00000545193		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-intron	ENST00000375430	ENST00000508091		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000476439	ENST00000254799		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000476439	ENST00000439371		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000476439	ENST00000502323		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-3CDS	ENST00000476439	ENST00000545193		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-intron	ENST00000476439	ENST00000508091		ChiTaRS3.1			CN407654	GRTP1	chr13	113994067	-	GRSF1	chr4	71691095	-
intron-intron	ENST00000221801	ENST00000376630		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000221801	ENST00000415649		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000221801	ENST00000415289		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000221801	ENST00000444683		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000221801	ENST00000383597		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000221801	ENST00000425603		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-3UTR	ENST00000221801	ENST00000427936		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000593503	ENST00000376630		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000593503	ENST00000415649		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000593503	ENST00000415289		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000593503	ENST00000444683		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000593503	ENST00000383597		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-intron	ENST00000593503	ENST00000425603		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-3UTR	ENST00000593503	ENST00000427936		ChiTaRS3.1			AW630569	FBL	chr19	40325135	-	HLA-E	chr6	1793577	+
intron-3CDS	ENST00000502288	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000507874	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000341181	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000437922	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000394180	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000503004	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000394185	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000394181	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000510545	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000511081	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000513287	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
intron-3CDS	ENST00000508503	ENST00000272091		ChiTaRS3.1			AW607405	CLDND1	chr3	98235940	-	SDE2	chr1	226176061	-
5CDS-intron	ENST00000344532	ENST00000397256		ChiTaRS3.1			BU175782	RCBTB2	chr13	49085910	-	ARPC4-TTLL3	chr3	9881912	-
5CDS-intron	ENST00000430805	ENST00000397256		ChiTaRS3.1			BU175782	RCBTB2	chr13	49085910	-	ARPC4-TTLL3	chr3	9881912	-
5CDS-intron	ENST00000544492	ENST00000397256		ChiTaRS3.1			BU175782	RCBTB2	chr13	49085910	-	ARPC4-TTLL3	chr3	9881912	-
5CDS-intron	ENST00000544904	ENST00000397256		ChiTaRS3.1			BU175782	RCBTB2	chr13	49085910	-	ARPC4-TTLL3	chr3	9881912	-
intron-intron	ENST00000481144	ENST00000397256		ChiTaRS3.1			BU175782	RCBTB2	chr13	49085910	-	ARPC4-TTLL3	chr3	9881912	-
5CDS-3UTR	ENST00000404625	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-intron	ENST00000404625	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-3UTR	ENST00000401651	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-intron	ENST00000401651	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-3UTR	ENST00000258743	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-intron	ENST00000258743	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-3UTR	ENST00000420258	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-intron	ENST00000420258	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-3UTR	ENST00000407492	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-intron	ENST00000407492	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-3UTR	ENST00000401630	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
5CDS-intron	ENST00000401630	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-3UTR	ENST00000406575	ENST00000303575		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-intron	ENST00000406575	ENST00000557670		ChiTaRS3.1			BE619286	IL6	chr7	22771050	+	TMED10	chr14	75598821	-
intron-3CDS	ENST00000366595	ENST00000568606		ChiTaRS3.1			BU581446	NID1	chr1	236143879	-	SQRDL	chr15	45981354	+
intron-3CDS	ENST00000366595	ENST00000260324		ChiTaRS3.1			BU581446	NID1	chr1	236143879	-	SQRDL	chr15	45981354	+
intron-3CDS	ENST00000264187	ENST00000568606		ChiTaRS3.1			BU581446	NID1	chr1	236143879	-	SQRDL	chr15	45981354	+
intron-3CDS	ENST00000264187	ENST00000260324		ChiTaRS3.1			BU581446	NID1	chr1	236143879	-	SQRDL	chr15	45981354	+
5CDS-3UTR	ENST00000379440	ENST00000319622		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000379440	ENST00000565184		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000379440	ENST00000389093		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000379440	ENST00000335181		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000379440	ENST00000568883		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000379440	ENST00000449901		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000379440	ENST00000565154		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-intron	ENST00000379440	ENST00000568459		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000319622		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000565184		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000389093		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000335181		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000568883		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000449901		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-3UTR	ENST00000430350	ENST00000565154		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
5CDS-intron	ENST00000430350	ENST00000568459		ChiTaRS3.1			CN332118	PRNP	chr20	4680117	+	PKM	chr15	72491944	-
Frame-shit	ENST00000435275	ENST00000409078		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000435275	ENST00000541859		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000435275	ENST00000541377		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000435275	ENST00000455322		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000435275	ENST00000397587		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000435275	ENST00000263710		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000435275	ENST00000545861		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
5CDS-intron	ENST00000435275	ENST00000430234		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000409078		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000541859		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000541377		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000455322		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000397587		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000263710		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000440692	ENST00000545861		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
5CDS-intron	ENST00000440692	ENST00000430234		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000409078		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000541859		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000541377		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000455322		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000397587		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000263710		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000372360	ENST00000545861		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
5CDS-intron	ENST00000372360	ENST00000430234		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000409078		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000541859		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000541377		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000455322		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000397587		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000263710		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-3CDS	ENST00000476545	ENST00000545861		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
3UTR-intron	ENST00000476545	ENST00000430234		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000409078		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000541859		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000541377		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000455322		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000397587		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000263710		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
Frame-shit	ENST00000360830	ENST00000545861		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
5CDS-intron	ENST00000360830	ENST00000430234		ChiTaRS3.1			BQ027949	RPS24	chr10	79795400	-	CLASP1	chr2	122122756	+
intron-3UTR	ENST00000367142	ENST00000269967		ChiTaRS3.1			BE562367	NUCKS1	chr1	205719196	-	CCDC97	chr19	41829181	+
intron-3UTR	ENST00000464938	ENST00000269967		ChiTaRS3.1			BE562367	NUCKS1	chr1	205719196	-	CCDC97	chr19	41829181	+
5CDS-intron	ENST00000322861	ENST00000330597		ChiTaRS3.1			BM090652	MYLPF	chr16	30387754	+	HBG1	chr11	5274604	-
intron-3CDS	ENST00000292778	ENST00000343815		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000292778	ENST00000428931		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000292778	ENST00000271877		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000292778	ENST00000361546		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-intron	ENST00000292778	ENST00000484819		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000398873	ENST00000343815		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000398873	ENST00000428931		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000398873	ENST00000271877		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-3CDS	ENST00000398873	ENST00000361546		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
intron-intron	ENST00000398873	ENST00000484819		ChiTaRS3.1			AW380892	YDJC	chr22	21982448	-	UBAP2L	chr1	154229649	+
In-frame	ENST00000332050	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332050	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332050	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332050	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332050	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332050	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000332050	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000397938	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000397938	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000397938	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000397938	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000397938	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000397938	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000397938	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000406548	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000406548	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000406548	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000406548	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000406548	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000406548	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000406548	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000331029	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000331029	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000331029	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000331029	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000331029	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000331029	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000331029	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000414183	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000414183	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000414183	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000414183	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000414183	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000414183	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000414183	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000333395	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000333395	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000333395	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000333395	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000333395	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000333395	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000333395	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332035	ENST00000319349		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332035	ENST00000393664		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332035	ENST00000538265		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332035	ENST00000545954		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332035	ENST00000545089		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
In-frame	ENST00000332035	ENST00000591713		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000332035	ENST00000586826		ChiTaRS3.1			U35622	EWSR1	chr22	29683123	+	ETV4	chr17	41607549	-
5CDS-5UTR	ENST00000336023	ENST00000538487		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000374181		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000374177		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000544773		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000545715		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000535756		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000609222		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
5CDS-intron	ENST00000336023	ENST00000455714		ChiTaRS3.1			DA127449	TUBA1B	chr12	49525079	-	GRM4	chr6	34101637	-
intron-3CDS	ENST00000374919	ENST00000601521		ChiTaRS3.1			BG929094	SPIN3	chrX	57017834	-	RPS5	chr19	58905861	+
intron-3CDS	ENST00000374919	ENST00000598098		ChiTaRS3.1			BG929094	SPIN3	chrX	57017834	-	RPS5	chr19	58905861	+
intron-3CDS	ENST00000374919	ENST00000598495		ChiTaRS3.1			BG929094	SPIN3	chrX	57017834	-	RPS5	chr19	58905861	+
intron-3CDS	ENST00000374919	ENST00000196551		ChiTaRS3.1			BG929094	SPIN3	chrX	57017834	-	RPS5	chr19	58905861	+
intron-3CDS	ENST00000374919	ENST00000596046		ChiTaRS3.1			BG929094	SPIN3	chrX	57017834	-	RPS5	chr19	58905861	+
intron-3CDS	ENST00000393701	ENST00000404816		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000354476		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000390003		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000418533		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000402934		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000404525		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000407925		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000272273		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000393701	ENST00000498013		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000404816		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000354476		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000390003		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000418533		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000402934		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000404525		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000407925		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000272273		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000568461	ENST00000498013		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000404816		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000354476		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000390003		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000418533		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000402934		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000404525		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000407925		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000272273		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000288040	ENST00000498013		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000404816		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000354476		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000390003		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000418533		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000402934		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000404525		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000407925		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000272273		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000449317	ENST00000498013		ChiTaRS3.1			BC038107	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
In-frame	ENST00000314531	ENST00000245544		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
In-frame	ENST00000314531	ENST00000541827		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
5CDS-5UTR	ENST00000314531	ENST00000579324		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
5CDS-3UTR	ENST00000314531	ENST00000449421		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
5CDS-3UTR	ENST00000314531	ENST00000579298		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
5CDS-5UTR	ENST00000314531	ENST00000447371		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
5CDS-intron	ENST00000314531	ENST00000540768		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-3CDS	ENST00000588050	ENST00000245544		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-3CDS	ENST00000588050	ENST00000541827		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-5UTR	ENST00000588050	ENST00000579324		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-3UTR	ENST00000588050	ENST00000449421		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-3UTR	ENST00000588050	ENST00000579298		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-5UTR	ENST00000588050	ENST00000447371		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-intron	ENST00000588050	ENST00000540768		ChiTaRS3.1			DA567594	ZNF77	chr19	2936522	-	NUP85	chr17	73208085	+
intron-5UTR	ENST00000462405	ENST00000304271		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000462405	ENST00000533310		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-intron	ENST00000462405	ENST00000530166		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000370425	ENST00000304271		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000370425	ENST00000533310		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-intron	ENST00000370425	ENST00000530166		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000294696	ENST00000304271		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000294696	ENST00000533310		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-intron	ENST00000294696	ENST00000530166		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000370424	ENST00000304271		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-5UTR	ENST00000370424	ENST00000533310		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-intron	ENST00000370424	ENST00000530166		ChiTaRS3.1			BF814894	HFM1	chr1	91852803	-	C11orf24	chr11	68031246	-
intron-3CDS	ENST00000373249	ENST00000353533		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
intron-3CDS	ENST00000373249	ENST00000415385		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
intron-intron	ENST00000373249	ENST00000581941		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
Frame-shit	ENST00000229903	ENST00000353533		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
Frame-shit	ENST00000229903	ENST00000415385		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
5CDS-intron	ENST00000229903	ENST00000581941		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
5UTR-3CDS	ENST00000481599	ENST00000353533		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
5UTR-3CDS	ENST00000481599	ENST00000415385		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
5UTR-intron	ENST00000481599	ENST00000581941		ChiTaRS3.1			DB082854	SAYSD1	chr6	39082657	-	MAP2K4	chr17	11958202	+
3UTR-3CDS	ENST00000272542	ENST00000421182		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000357867		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000323926		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000336916		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000354785		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000357009		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000346544		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000345488		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000359671		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000446046		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000443816		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000432072		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-3CDS	ENST00000272542	ENST00000356005		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-intron	ENST00000272542	ENST00000490833		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
3UTR-intron	ENST00000272542	ENST00000426059		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000421182		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000357867		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000323926		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000336916		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000354785		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000357009		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000346544		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000345488		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000359671		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000446046		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000443816		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000432072		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-3CDS	ENST00000480984	ENST00000356005		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-intron	ENST00000480984	ENST00000490833		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-intron	ENST00000480984	ENST00000426059		ChiTaRS3.1			BF196993	SLC20A1	chr2	113421270	-	FN1	chr2	216274772	+
intron-intron	ENST00000276449	ENST00000354570		ChiTaRS3.1			BP196904	STAR	chr8	38005805	-	MAP7	chr6	136862691	-
intron-intron	ENST00000276449	ENST00000454590		ChiTaRS3.1			BP196904	STAR	chr8	38005805	-	MAP7	chr6	136862691	-
intron-intron	ENST00000276449	ENST00000544465		ChiTaRS3.1			BP196904	STAR	chr8	38005805	-	MAP7	chr6	136862691	-
intron-intron	ENST00000276449	ENST00000438100		ChiTaRS3.1			BP196904	STAR	chr8	38005805	-	MAP7	chr6	136862691	-
intron-intron	ENST00000276449	ENST00000432797		ChiTaRS3.1			BP196904	STAR	chr8	38005805	-	MAP7	chr6	136862691	-
5UTR-5UTR	ENST00000393223	ENST00000505330		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000504381		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000507488		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000393221		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000533801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000510168		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000508532		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000504948		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000513801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000328560		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000428331		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000359644		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000393223	ENST00000422190		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-intron	ENST00000393223	ENST00000509150		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000505330		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000504381		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000507488		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000393221		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000533801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000510168		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000508532		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000504948		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000513801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000328560		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000428331		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000359644		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-5UTR	ENST00000346299	ENST00000422190		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5CDS-intron	ENST00000346299	ENST00000509150		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000505330		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000504381		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000507488		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000393221		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000533801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000510168		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000508532		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000504948		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000513801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000328560		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000428331		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000359644		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000409459	ENST00000422190		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-intron	ENST00000409459	ENST00000509150		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000505330		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000504381		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000507488		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000393221		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000533801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000510168		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000508532		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000504948		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000513801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000328560		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000428331		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000359644		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-5UTR	ENST00000352297	ENST00000422190		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
5UTR-intron	ENST00000352297	ENST00000509150		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000505330		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000504381		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000507488		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000393221		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000533801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000510168		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000508532		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000504948		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000513801		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000328560		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000428331		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000359644		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-5UTR	ENST00000484818	ENST00000422190		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-intron	ENST00000484818	ENST00000509150		ChiTaRS3.1			DB155299	MTMR2	chr11	95657037	-	ATP2C1	chr3	130649258	+
intron-intron	ENST00000527132	ENST00000490746		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000527132	ENST00000393913		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000527132	ENST00000233712		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000527132	ENST00000410113		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000527132	ENST00000410071		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000527132	ENST00000410010		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000396505	ENST00000490746		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000396505	ENST00000393913		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000396505	ENST00000233712		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000396505	ENST00000410113		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000396505	ENST00000410071		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000396505	ENST00000410010		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000326932	ENST00000490746		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000326932	ENST00000393913		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000326932	ENST00000233712		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000326932	ENST00000410113		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000326932	ENST00000410071		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000326932	ENST00000410010		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000525493	ENST00000490746		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000525493	ENST00000393913		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000525493	ENST00000233712		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000525493	ENST00000410113		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000525493	ENST00000410071		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000525493	ENST00000410010		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000450094	ENST00000490746		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000450094	ENST00000393913		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000450094	ENST00000233712		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-3UTR	ENST00000450094	ENST00000410113		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000450094	ENST00000410071		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000450094	ENST00000410010		ChiTaRS3.1			BQ021491	DKK3	chr11	11984760	+	EVA1A	chr2	75720116	+
intron-intron	ENST00000337620	ENST00000560305		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000561011		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000559911		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558113		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000358005		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000416810		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558750		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558871		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000560109		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000560305		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000561011		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000559911		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558113		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000358005		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000416810		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558750		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558871		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000560109		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000560305		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000561011		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000559911		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558113		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000358005		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000416810		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558750		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558871		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000560109		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000560305		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000561011		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000559911		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558113		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000358005		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000416810		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558750		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558871		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000560109		ChiTaRS3.1			AI344209	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
In-frame	ENST00000358731	ENST00000399788		ChiTaRS3.1			CB119529	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5CDS-intron	ENST00000358731	ENST00000540838		ChiTaRS3.1			CB119529	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5CDS-intron	ENST00000358731	ENST00000382815		ChiTaRS3.1			CB119529	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5UTR-3CDS	ENST00000380675	ENST00000399788		ChiTaRS3.1			CB119529	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5UTR-intron	ENST00000380675	ENST00000540838		ChiTaRS3.1			CB119529	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5UTR-intron	ENST00000380675	ENST00000382815		ChiTaRS3.1			CB119529	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
Frame-shit	ENST00000341529	ENST00000340384		ChiTaRS3.1			AK310334	CDH5	chr16	66424453	+	TUBB4B	chr9	140137262	+
Frame-shit	ENST00000563425	ENST00000340384		ChiTaRS3.1			AK310334	CDH5	chr16	66424453	+	TUBB4B	chr9	140137262	+
intron-3CDS	ENST00000539168	ENST00000340384		ChiTaRS3.1			AK310334	CDH5	chr16	66424453	+	TUBB4B	chr9	140137262	+
intron-3CDS	ENST00000290130	ENST00000318911		ChiTaRS3.1			BM562582	MIS18A	chr21	33642030	-	CYC1	chr8	145151031	+
intron-3CDS	ENST00000486363	ENST00000318911		ChiTaRS3.1			BM562582	MIS18A	chr21	33642030	-	CYC1	chr8	145151031	+
intron-3CDS	ENST00000511642	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000511642	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000415497	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000415497	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000372988	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000372988	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000510503	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000510503	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000511686	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000511686	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-3CDS	ENST00000372991	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000372991	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-3CDS	ENST00000372987	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000372987	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-3CDS	ENST00000414200	ENST00000316157		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000414200	ENST00000469487		ChiTaRS3.1			DB230357	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
In-frame	ENST00000358127	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000358127	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000523241	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000523241	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000520154	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000520154	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000377852	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000377852	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000377853	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000377853	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
Frame-shit	ENST00000522003	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000522003	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000520281	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000520281	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000414447	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000414447	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
Frame-shit	ENST00000523145	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000523145	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000446742	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000446742	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
In-frame	ENST00000377847	ENST00000396373		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
5CDS-intron	ENST00000377847	ENST00000544715		ChiTaRS3.1			DQ841178	PAX5	chr9	37006469	-	ETV6	chr12	11992072	+
intron-3UTR	ENST00000372188	ENST00000253039		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
intron-intron	ENST00000372188	ENST00000460032		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
3UTR-3UTR	ENST00000372187	ENST00000253039		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
3UTR-intron	ENST00000372187	ENST00000460032		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
3UTR-3UTR	ENST00000372185	ENST00000253039		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
3UTR-intron	ENST00000372185	ENST00000460032		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
3UTR-3UTR	ENST00000372181	ENST00000253039		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
3UTR-intron	ENST00000372181	ENST00000460032		ChiTaRS3.1			AA460998	FAM213A	chr10	82192088	+	EIF2S3	chrX	24095449	+
intron-3CDS	ENST00000355299	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000355299	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000355299	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000559836	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000559836	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000559836	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000559910	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000559910	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000559910	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000399440	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000399440	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000399440	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000420554	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000420554	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000420554	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
Frame-shit	ENST00000348719	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
5CDS-intron	ENST00000348719	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
5CDS-intron	ENST00000348719	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
Frame-shit	ENST00000557854	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
5CDS-intron	ENST00000557854	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
5CDS-intron	ENST00000557854	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000559104	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000559104	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000559104	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000456667	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000456667	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000456667	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3CDS	ENST00000560517	ENST00000356493		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000560517	ENST00000452248		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-intron	ENST00000560517	ENST00000487490		ChiTaRS3.1			AK075025	GMPR2	chr14	24707667	+	STOML2	chr9	35101490	-
intron-3UTR	ENST00000544840	ENST00000249750		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-3UTR	ENST00000544840	ENST00000347587		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000544840	ENST00000537372		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000544840	ENST00000558231		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000544840	ENST00000559517		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000544840	ENST00000559579		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-3UTR	ENST00000434554	ENST00000249750		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-3UTR	ENST00000434554	ENST00000347587		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000434554	ENST00000537372		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000434554	ENST00000558231		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000434554	ENST00000559517		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000434554	ENST00000559579		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-3UTR	ENST00000225573	ENST00000249750		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-3UTR	ENST00000225573	ENST00000347587		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-intron	ENST00000225573	ENST00000537372		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-intron	ENST00000225573	ENST00000558231		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-intron	ENST00000225573	ENST00000559517		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-intron	ENST00000225573	ENST00000559579		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-3UTR	ENST00000534893	ENST00000249750		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-3UTR	ENST00000534893	ENST00000347587		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000534893	ENST00000537372		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000534893	ENST00000558231		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000534893	ENST00000559517		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
intron-intron	ENST00000534893	ENST00000559579		ChiTaRS3.1			BG231914	PNPO	chr17	46025502	-	ALDH1A2	chr15	58245801	+
3UTR-3UTR	ENST00000537591	ENST00000377453		ChiTaRS3.1			AW020290	ACOT13	chr6	24705160	-	CLN5	chr13	77575962	+
3UTR-intron	ENST00000537591	ENST00000485938		ChiTaRS3.1			AW020290	ACOT13	chr6	24705160	-	CLN5	chr13	77575962	+
3UTR-3UTR	ENST00000230048	ENST00000377453		ChiTaRS3.1			AW020290	ACOT13	chr6	24705160	-	CLN5	chr13	77575962	+
3UTR-intron	ENST00000230048	ENST00000485938		ChiTaRS3.1			AW020290	ACOT13	chr6	24705160	-	CLN5	chr13	77575962	+
intron-3UTR	ENST00000476436	ENST00000377453		ChiTaRS3.1			AW020290	ACOT13	chr6	24705160	-	CLN5	chr13	77575962	+
intron-intron	ENST00000476436	ENST00000485938		ChiTaRS3.1			AW020290	ACOT13	chr6	24705160	-	CLN5	chr13	77575962	+
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			AI075687	EEF2	chr19	3982344	+	EEF2	chr19	3977241	+
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			AI075687	EEF2	chr19	3982344	+	EEF2	chr19	3977241	+
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			AI075687	EEF2	chr19	3982344	+	EEF2	chr19	3977241	+
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			AI075687	EEF2	chr19	3982344	+	EEF2	chr19	3977241	+
5CDS-intron	ENST00000522495	ENST00000354464		ChiTaRS3.1			BF917390	IDO1	chr8	39780127	+	IPO4	chr14	24658704	-
5CDS-intron	ENST00000518237	ENST00000354464		ChiTaRS3.1			BF917390	IDO1	chr8	39780127	+	IPO4	chr14	24658704	-
3UTR-3CDS	ENST00000451292	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000451292	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000377797	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000445265	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000323668	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000439160	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000394269	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000504761	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000513346	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000336452		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000336458		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000576930		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000572815		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000573542		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000419711		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000571955		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
intron-3CDS	ENST00000506063	ENST00000416016		ChiTaRS3.1			BF883338	TCOF1	chr5	149778618	+	EIF5A	chr17	7213103	+
3UTR-3CDS	ENST00000371743	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000371743	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000371743	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000450535	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000450535	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000450535	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000441722	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000441722	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000441722	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000417721	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000417721	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000417721	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000458653	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000458653	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000458653	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000326677	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000326677	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000326677	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000428008	ENST00000392313		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3CDS	ENST00000428008	ENST00000262815		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000428008	ENST00000586189		ChiTaRS3.1			DB150019	ZFAS1	chr20	47895745	+	MAU2	chr19	19447979	+
3UTR-3UTR	ENST00000572515	ENST00000331595		ChiTaRS3.1			AW613805	NFKBIB	chr19	39398899	-	BGN	chrX	152774300	-
3UTR-3UTR	ENST00000572515	ENST00000480756		ChiTaRS3.1			AW613805	NFKBIB	chr19	39398899	-	BGN	chrX	152774300	-
3UTR-3UTR	ENST00000392079	ENST00000331595		ChiTaRS3.1			AW613805	NFKBIB	chr19	39398899	-	BGN	chrX	152774300	-
3UTR-3UTR	ENST00000392079	ENST00000480756		ChiTaRS3.1			AW613805	NFKBIB	chr19	39398899	-	BGN	chrX	152774300	-
intron-3UTR	ENST00000313582	ENST00000331595		ChiTaRS3.1			AW613805	NFKBIB	chr19	39398899	-	BGN	chrX	152774300	-
intron-3UTR	ENST00000313582	ENST00000480756		ChiTaRS3.1			AW613805	NFKBIB	chr19	39398899	-	BGN	chrX	152774300	-
intron-intron	ENST00000273153	ENST00000587461		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-3UTR	ENST00000273153	ENST00000443905		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000273153	ENST00000540806		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000273153	ENST00000450683		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000273153	ENST00000587452		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000273153	ENST00000545006		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000273153	ENST00000595825		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000514182	ENST00000587461		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-3UTR	ENST00000514182	ENST00000443905		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000514182	ENST00000540806		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000514182	ENST00000450683		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000514182	ENST00000587452		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000514182	ENST00000545006		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
intron-intron	ENST00000514182	ENST00000595825		ChiTaRS3.1			AV658727	CSRNP1	chr3	39185143	-	ZNF506	chr19	19904911	-
Frame-shit	ENST00000515359	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000515359	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
5CDS-intron	ENST00000515359	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000308775	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
5CDS-intron	ENST00000308775	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000541308	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
5CDS-intron	ENST00000541308	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000539901	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
5CDS-intron	ENST00000539901	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000545947	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
5CDS-intron	ENST00000545947	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
Frame-shit	ENST00000538711	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
5CDS-intron	ENST00000538711	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000346798		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000354192		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000348990		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000357903		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000358918		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000359726		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000448388		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000440126		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-3CDS	ENST00000479935	ENST00000439274		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
3UTR-intron	ENST00000479935	ENST00000474136		ChiTaRS3.1			DA831654	DAG1	chr3	49548169	+	APP	chr21	27284101	-
intron-3CDS	ENST00000263087	ENST00000369788		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-3CDS	ENST00000263087	ENST00000260743		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-intron	ENST00000263087	ENST00000393235		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-intron	ENST00000263087	ENST00000494180		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-3CDS	ENST00000571185	ENST00000369788		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-3CDS	ENST00000571185	ENST00000260743		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-intron	ENST00000571185	ENST00000393235		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
intron-intron	ENST00000571185	ENST00000494180		ChiTaRS3.1			AI383570	ITGAE	chr17	3618123	+	CALHM2	chr10	105207098	+
In-frame	ENST00000396373	ENST00000394480		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000557856		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000357724		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000355254		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000360948		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000542733		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000558676		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
5CDS-intron	ENST00000396373	ENST00000317501		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
5CDS-intron	ENST00000396373	ENST00000558306		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
5CDS-intron	ENST00000396373	ENST00000540489		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000394480		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000557856		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000357724		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000355254		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000360948		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000542733		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000558676		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-intron	ENST00000544715	ENST00000317501		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-intron	ENST00000544715	ENST00000558306		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-intron	ENST00000544715	ENST00000540489		ChiTaRS3.1			AF125808	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3UTR	ENST00000373203	ENST00000380320		ChiTaRS3.1			AA565269	ENG	chr9	130586624	-	EMILIN1	chr2	27309212	+
intron-3UTR	ENST00000344849	ENST00000380320		ChiTaRS3.1			AA565269	ENG	chr9	130586624	-	EMILIN1	chr2	27309212	+
intron-3UTR	ENST00000480266	ENST00000380320		ChiTaRS3.1			AA565269	ENG	chr9	130586624	-	EMILIN1	chr2	27309212	+
intron-3CDS	ENST00000553400	ENST00000323851		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000553400	ENST00000354944		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000553400	ENST00000521414		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000553400	ENST00000537882		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000553400	ENST00000414097		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000553400	ENST00000518176		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000553400	ENST00000522476		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000553400	ENST00000518066		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000330836	ENST00000323851		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000330836	ENST00000354944		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000330836	ENST00000521414		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000330836	ENST00000537882		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000330836	ENST00000414097		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000330836	ENST00000518176		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000330836	ENST00000522476		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000330836	ENST00000518066		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000544005	ENST00000323851		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000544005	ENST00000354944		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000544005	ENST00000521414		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000544005	ENST00000537882		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000544005	ENST00000414097		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000544005	ENST00000518176		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000544005	ENST00000522476		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000544005	ENST00000518066		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000555054	ENST00000323851		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-3CDS	ENST00000555054	ENST00000354944		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000555054	ENST00000521414		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000555054	ENST00000537882		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-5UTR	ENST00000555054	ENST00000414097		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000555054	ENST00000518176		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000555054	ENST00000522476		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
intron-intron	ENST00000555054	ENST00000518066		ChiTaRS3.1			AK026383	DDX24	chr14	94519375	-	NDRG1	chr8	134260168	-
5CDS-3UTR	ENST00000373580	ENST00000359895		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-3UTR	ENST00000373580	ENST00000356618		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-3UTR	ENST00000373580	ENST00000355841		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-intron	ENST00000373580	ENST00000505746		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-intron	ENST00000373580	ENST00000393551		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-intron	ENST00000373580	ENST00000355572		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-3UTR	ENST00000288815	ENST00000359895		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-3UTR	ENST00000288815	ENST00000356618		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-3UTR	ENST00000288815	ENST00000355841		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-intron	ENST00000288815	ENST00000505746		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-intron	ENST00000288815	ENST00000393551		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
5CDS-intron	ENST00000288815	ENST00000355572		ChiTaRS3.1			AK074709	OLFML2A	chr9	127566520	+	PDLIM7	chr5	176910505	-
intron-3CDS	ENST00000364849	ENST00000322776		ChiTaRS3.1			CB118919	SNHG6	chr8	67834708	-	NDUFV1	chr11	67377065	+
intron-3CDS	ENST00000364849	ENST00000532303		ChiTaRS3.1			CB118919	SNHG6	chr8	67834708	-	NDUFV1	chr11	67377065	+
intron-3CDS	ENST00000364849	ENST00000529927		ChiTaRS3.1			CB118919	SNHG6	chr8	67834708	-	NDUFV1	chr11	67377065	+
intron-3CDS	ENST00000364849	ENST00000415352		ChiTaRS3.1			CB118919	SNHG6	chr8	67834708	-	NDUFV1	chr11	67377065	+
intron-3UTR	ENST00000364849	ENST00000526169		ChiTaRS3.1			CB118919	SNHG6	chr8	67834708	-	NDUFV1	chr11	67377065	+
5UTR-3UTR	ENST00000249442	ENST00000608442		ChiTaRS3.1			BU153892	MTX2	chr2	177134259	+	AFAP1-AS1	chr4	7774603	-
5UTR-3UTR	ENST00000392529	ENST00000608442		ChiTaRS3.1			BU153892	MTX2	chr2	177134259	+	AFAP1-AS1	chr4	7774603	-
5UTR-3UTR	ENST00000443241	ENST00000608442		ChiTaRS3.1			BU153892	MTX2	chr2	177134259	+	AFAP1-AS1	chr4	7774603	-
3UTR-3CDS	ENST00000566044	ENST00000354817		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000566044	ENST00000527202		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000566044	ENST00000532502		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-3CDS	ENST00000455779	ENST00000354817		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000455779	ENST00000527202		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000455779	ENST00000532502		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-3CDS	ENST00000299167	ENST00000354817		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000299167	ENST00000527202		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000299167	ENST00000532502		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-3CDS	ENST00000323584	ENST00000354817		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000323584	ENST00000527202		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
3UTR-intron	ENST00000323584	ENST00000532502		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
intron-3CDS	ENST00000567402	ENST00000354817		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
intron-intron	ENST00000567402	ENST00000527202		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
intron-intron	ENST00000567402	ENST00000532502		ChiTaRS3.1			BE707585	PHKB	chr16	47733387	+	FAR1	chr11	13749157	+
In-frame	ENST00000396373	ENST00000318560		ChiTaRS3.1			Z35761	ETV6	chr12	12006495	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000544715	ENST00000318560		ChiTaRS3.1			Z35761	ETV6	chr12	12006495	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000431922	ENST00000216146		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-5UTR	ENST00000431922	ENST00000465618		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-5UTR	ENST00000431922	ENST00000401609		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-3CDS	ENST00000329858	ENST00000216146		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-5UTR	ENST00000329858	ENST00000465618		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-5UTR	ENST00000329858	ENST00000401609		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-3CDS	ENST00000540335	ENST00000216146		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-5UTR	ENST00000540335	ENST00000465618		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-5UTR	ENST00000540335	ENST00000401609		ChiTaRS3.1			CD699756	LPAR5	chr12	6730603	-	RPL3	chr22	39713608	-
intron-3CDS	ENST00000222254	ENST00000399808		ChiTaRS3.1			AA375376	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
intron-3CDS	ENST00000222254	ENST00000526811		ChiTaRS3.1			AA375376	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
intron-3CDS	ENST00000222254	ENST00000602735		ChiTaRS3.1			AA375376	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
3UTR-3CDS	ENST00000593731	ENST00000399808		ChiTaRS3.1			AA375376	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
3UTR-3CDS	ENST00000593731	ENST00000526811		ChiTaRS3.1			AA375376	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
3UTR-3CDS	ENST00000593731	ENST00000602735		ChiTaRS3.1			AA375376	PIK3R2	chr19	18285903	+	IFITM3	chr11	320694	-
Frame-shit	ENST00000511689	ENST00000339302		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-3UTR	ENST00000511689	ENST00000430298		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000511689	ENST00000397755		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000511689	ENST00000596883		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000511689	ENST00000397759		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-3CDS	ENST00000512507	ENST00000339302		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-3UTR	ENST00000512507	ENST00000430298		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000512507	ENST00000397755		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000512507	ENST00000596883		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000512507	ENST00000397759		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
Frame-shit	ENST00000304332	ENST00000339302		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-3UTR	ENST00000304332	ENST00000430298		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000304332	ENST00000397755		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000304332	ENST00000596883		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000304332	ENST00000397759		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
Frame-shit	ENST00000312469	ENST00000339302		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-3UTR	ENST00000312469	ENST00000430298		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000312469	ENST00000397755		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000312469	ENST00000596883		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000312469	ENST00000397759		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-3CDS	ENST00000423969	ENST00000339302		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-3UTR	ENST00000423969	ENST00000430298		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000423969	ENST00000397755		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000423969	ENST00000596883		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000423969	ENST00000397759		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
In-frame	ENST00000510038	ENST00000339302		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-3UTR	ENST00000510038	ENST00000430298		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000510038	ENST00000397755		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000510038	ENST00000596883		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
5CDS-intron	ENST00000510038	ENST00000397759		ChiTaRS3.1			BP429307	H2AFY	chr5	134696184	-	ZNF788	chr19	12224136	+
intron-intron	ENST00000524630	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000524630	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000524630	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000524630	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529919	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529919	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529919	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529919	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399039	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399039	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399039	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399039	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000360682	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000360682	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000360682	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000360682	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361796	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361796	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361796	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361796	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361391	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361391	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361391	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361391	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530094	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530094	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530094	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530094	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000428599	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000428599	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000428599	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000428599	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361332	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361332	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361332	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000361332	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000527467	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000527467	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000527467	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000527467	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000415361	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000415361	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000415361	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000415361	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532245	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532245	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532245	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532245	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532463	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532463	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532463	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532463	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528232	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528232	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528232	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528232	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529986	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529986	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529986	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529986	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000531014	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000531014	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000531014	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000531014	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000358694	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000358694	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000358694	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000358694	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526772	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526772	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526772	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526772	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532787	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532787	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532787	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532787	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000533667	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000533667	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000533667	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000533667	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529873	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529873	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529873	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529873	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000525902	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000525902	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000525902	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000525902	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529526	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529526	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529526	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000529526	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532649	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532649	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532649	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532649	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000426142	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000426142	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000426142	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000426142	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532844	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532844	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532844	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000532844	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528621	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528621	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528621	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000528621	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399050	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399050	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399050	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000399050	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526357	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526357	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526357	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526357	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530748	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530748	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530748	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000530748	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000534579	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000534579	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000534579	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000534579	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526938	ENST00000536534		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526938	ENST00000427495		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526938	ENST00000442594		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
intron-intron	ENST00000526938	ENST00000474177		ChiTaRS3.1			BQ925294	CTNND1	chr11	57510507	+	PLD5	chr1	242625898	+
Frame-shit	ENST00000229239	ENST00000356577		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000229239	ENST00000290239		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000229239	ENST00000381692		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000229239	ENST00000300278		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000229239	ENST00000381679		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000229239	ENST00000470533		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5UTR-3CDS	ENST00000396856	ENST00000356577		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5UTR-3CDS	ENST00000396856	ENST00000290239		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5UTR-intron	ENST00000396856	ENST00000381692		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5UTR-intron	ENST00000396856	ENST00000300278		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5UTR-intron	ENST00000396856	ENST00000381679		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5UTR-intron	ENST00000396856	ENST00000470533		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000396861	ENST00000356577		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000396861	ENST00000290239		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396861	ENST00000381692		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396861	ENST00000300278		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396861	ENST00000381679		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396861	ENST00000470533		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000396859	ENST00000356577		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000396859	ENST00000290239		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396859	ENST00000381692		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396859	ENST00000300278		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396859	ENST00000381679		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396859	ENST00000470533		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000396858	ENST00000356577		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
Frame-shit	ENST00000396858	ENST00000290239		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396858	ENST00000381692		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396858	ENST00000300278		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396858	ENST00000381679		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
5CDS-intron	ENST00000396858	ENST00000470533		ChiTaRS3.1			DA446259	GAPDH	chr12	6645897	+	SON	chr21	34927473	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911234	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911234	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911234	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911234	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-3CDS	ENST00000607334	ENST00000300737		ChiTaRS3.1			DB149054	DLEU2	chr13	50656693	+	STIM1	chr11	4076753	+
intron-3CDS	ENST00000607334	ENST00000527651		ChiTaRS3.1			DB149054	DLEU2	chr13	50656693	+	STIM1	chr11	4076753	+
intron-3UTR	ENST00000607334	ENST00000527484		ChiTaRS3.1			DB149054	DLEU2	chr13	50656693	+	STIM1	chr11	4076753	+
intron-intron	ENST00000607334	ENST00000533977		ChiTaRS3.1			DB149054	DLEU2	chr13	50656693	+	STIM1	chr11	4076753	+
intron-3CDS	ENST00000464451	ENST00000280326		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
intron-3CDS	ENST00000464451	ENST00000503026		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
intron-3CDS	ENST00000464451	ENST00000515390		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
intron-3CDS	ENST00000464451	ENST00000515676		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
intron-3CDS	ENST00000464451	ENST00000506600		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000243253	ENST00000280326		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000243253	ENST00000503026		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000243253	ENST00000515390		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000243253	ENST00000515676		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000243253	ENST00000506600		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000424880	ENST00000280326		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000424880	ENST00000503026		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000424880	ENST00000515390		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000424880	ENST00000515676		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000424880	ENST00000506600		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000483956	ENST00000280326		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000483956	ENST00000503026		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000483956	ENST00000515390		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000483956	ENST00000515676		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
3UTR-3CDS	ENST00000483956	ENST00000506600		ChiTaRS3.1			AW105324	SEC61A1	chr3	127790242	-	CCT5	chr5	10262662	+
Frame-shit	ENST00000351293	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000351293	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000351293	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000322635	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000322635	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000322635	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000394762	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000394762	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000394762	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000423381	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000423381	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000423381	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000322680	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000322680	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000322680	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000305762	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000305762	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000305762	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000372765	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000372765	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000372765	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5UTR-3CDS	ENST00000472912	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5UTR-3CDS	ENST00000472912	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5UTR-intron	ENST00000472912	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000444854	ENST00000342756		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
Frame-shit	ENST00000444854	ENST00000510663		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
5CDS-intron	ENST00000444854	ENST00000504757		ChiTaRS3.1			U81554	CAMK2G	chr10	75597226	-	SRP72	chr4	57349375	+
3UTR-3CDS	ENST00000268989	ENST00000358196		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-intron	ENST00000268989	ENST00000375272		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-intron	ENST00000268989	ENST00000344257		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-intron	ENST00000268989	ENST00000429023		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-3CDS	ENST00000426855	ENST00000358196		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-intron	ENST00000426855	ENST00000375272		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-intron	ENST00000426855	ENST00000344257		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-intron	ENST00000426855	ENST00000429023		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
intron-3CDS	ENST00000574563	ENST00000358196		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
intron-intron	ENST00000574563	ENST00000375272		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
intron-intron	ENST00000574563	ENST00000344257		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
intron-intron	ENST00000574563	ENST00000429023		ChiTaRS3.1			AW162120	SGSM2	chr17	2284208	-	GAD1	chr2	171716272	-
3UTR-5UTR	ENST00000322002	ENST00000373316		ChiTaRS3.1			AU142940	SOX11	chr2	5838208	+	PGK1	chrX	77359752	+
3UTR-5UTR	ENST00000322002	ENST00000442431		ChiTaRS3.1			AU142940	SOX11	chr2	5838208	+	PGK1	chrX	77359752	+
3UTR-intron	ENST00000322002	ENST00000537456		ChiTaRS3.1			AU142940	SOX11	chr2	5838208	+	PGK1	chrX	77359752	+
3UTR-intron	ENST00000322002	ENST00000476531		ChiTaRS3.1			AU142940	SOX11	chr2	5838208	+	PGK1	chrX	77359752	+
Frame-shit	ENST00000358867	ENST00000393125		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000393127		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000282499		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000428631		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000525187		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000530497		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000527669		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000358867	ENST00000533094		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
In-frame	ENST00000534341	ENST00000393125		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000393127		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000282499		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000428631		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000525187		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000530497		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000527669		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000534341	ENST00000533094		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
Frame-shit	ENST00000393375	ENST00000393125		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000393127		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000282499		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000428631		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000525187		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000530497		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000527669		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
5CDS-intron	ENST00000393375	ENST00000533094		ChiTaRS3.1			BP213476	TMEM126B	chr11	85346822	+	GRIA4	chr11	105782602	+
intron-3UTR	ENST00000369582	ENST00000399788		ChiTaRS3.1			R81128	CGA	chr6	87795409	-	KDM5A	chr12	390610	-
intron-intron	ENST00000369582	ENST00000540838		ChiTaRS3.1			R81128	CGA	chr6	87795409	-	KDM5A	chr12	390610	-
intron-intron	ENST00000369582	ENST00000382815		ChiTaRS3.1			R81128	CGA	chr6	87795409	-	KDM5A	chr12	390610	-
intron-5UTR	ENST00000384756	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000364799	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000384693	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000383926	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000516331	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000384706	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000363981	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000384147	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
5CDS-5UTR	ENST00000365607	ENST00000372134		ChiTaRS3.1			DA262270	SNHG1	chr11	62623037	-	GHITM	chr10	85899265	+
intron-5UTR	ENST00000295470	ENST00000474210		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000295470	ENST00000394231		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000295470	ENST00000577810		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-5UTR	ENST00000349655	ENST00000474210		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000349655	ENST00000394231		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000349655	ENST00000577810		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-5UTR	ENST00000602300	ENST00000474210		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000602300	ENST00000394231		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000602300	ENST00000577810		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-5UTR	ENST00000502762	ENST00000474210		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000502762	ENST00000394231		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000502762	ENST00000577810		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-5UTR	ENST00000514511	ENST00000474210		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000514511	ENST00000394231		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
intron-3UTR	ENST00000514511	ENST00000577810		ChiTaRS3.1			AA455595	HNRNPDL	chr4	83346687	-	MIEN1	chr17	37885624	-
Frame-shit	ENST00000263097	ENST00000291386		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
In-frame	ENST00000263097	ENST00000359060		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
3UTR-3CDS	ENST00000606983	ENST00000291386		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
3UTR-3CDS	ENST00000606983	ENST00000359060		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
Frame-shit	ENST00000348419	ENST00000291386		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
In-frame	ENST00000348419	ENST00000359060		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
intron-3CDS	ENST00000565096	ENST00000291386		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
intron-3CDS	ENST00000565096	ENST00000359060		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
Frame-shit	ENST00000562958	ENST00000291386		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
In-frame	ENST00000562958	ENST00000359060		ChiTaRS3.1			DB278470	CNN2	chr19	1032695	+	SSU72	chr1	1500298	-
intron-3UTR	ENST00000599539	ENST00000266458		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000421801		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000544284		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000545047		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000543602		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000545887		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000539289		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000599539	ENST00000546017		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000599539	ENST00000535576		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000599539	ENST00000539170		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000339471	ENST00000266458		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000421801		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000544284		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000545047		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000543602		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000545887		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000539289		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000339471	ENST00000546017		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000339471	ENST00000535576		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000339471	ENST00000539170		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000251453	ENST00000266458		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000421801		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000544284		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000545047		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000543602		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000545887		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000539289		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000251453	ENST00000546017		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000251453	ENST00000535576		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000251453	ENST00000539170		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000601655	ENST00000266458		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000421801		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000544284		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000545047		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000543602		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000545887		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000539289		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000601655	ENST00000546017		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000601655	ENST00000535576		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-3UTR	ENST00000601655	ENST00000539170		ChiTaRS3.1			CB528938	RPS16	chr19	39924014	+	GABARAPL1	chr12	10374746	-
intron-intron	ENST00000228841	ENST00000540275		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000228841	ENST00000452085		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000228841	ENST00000537543		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000228841	ENST00000331677		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000228841	ENST00000359564		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000228841	ENST00000606265		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000548438	ENST00000540275		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000548438	ENST00000452085		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000548438	ENST00000537543		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000548438	ENST00000331677		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000548438	ENST00000359564		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
intron-intron	ENST00000548438	ENST00000606265		ChiTaRS3.1			BF577271	MYL2	chr12	111351075	-	DSE	chr6	116598542	-
Frame-shit	ENST00000348547	ENST00000296417		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
5CDS-5UTR	ENST00000348547	ENST00000529158		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
Frame-shit	ENST00000357394	ENST00000296417		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
5CDS-5UTR	ENST00000357394	ENST00000529158		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
In-frame	ENST00000279052	ENST00000296417		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
5CDS-5UTR	ENST00000279052	ENST00000529158		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
In-frame	ENST00000447986	ENST00000296417		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
5CDS-5UTR	ENST00000447986	ENST00000529158		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
intron-3CDS	ENST00000482338	ENST00000296417		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
intron-5UTR	ENST00000482338	ENST00000529158		ChiTaRS3.1			BF987576	ERGIC3	chr20	34145243	+	H2AFZ	chr4	100870457	-
3UTR-3UTR	ENST00000284202	ENST00000414645		ChiTaRS3.1			BU754222	IMPACT	chr18	22033421	-	DPY19L4	chr8	95803304	-
intron-intron	ENST00000375651	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000375651	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000458062	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000608703	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000430065	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000422919	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000441618	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000449876	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000433487	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000452298	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000400040	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000318789		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000475937		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000493089		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000484350		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000318779		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000491238		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000498215		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000468577		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
3UTR-intron	ENST00000383389	ENST00000472382		ChiTaRS3.1			AI826170	HSPA1A	chr6	3079143	-	FOXP1	chr3	71096093	+
intron-intron	ENST00000306601	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000306601	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000306601	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000306601	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000306601	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000427146	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000427146	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000427146	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000427146	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000427146	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366471	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366471	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366471	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366471	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366471	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366469	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366469	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366469	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366469	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000366469	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000451251	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000451251	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000451251	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000451251	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000451251	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000468455	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000468455	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000468455	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000468455	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000468455	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000391820	ENST00000553277		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000391820	ENST00000243077		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000391820	ENST00000338962		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000391820	ENST00000554174		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-intron	ENST00000391820	ENST00000553446		ChiTaRS3.1			BI046606	ZNF692	chr1	249151694	-	LRP1	chr12	57569304	+
intron-5UTR	ENST00000529230	ENST00000246895		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000529230	ENST00000381060		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000415402	ENST00000246895		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000415402	ENST00000381060		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000312055	ENST00000246895		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000312055	ENST00000381060		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000354558	ENST00000246895		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000354558	ENST00000381060		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000532321	ENST00000246895		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-5UTR	ENST00000532321	ENST00000381060		ChiTaRS3.1			AX747668	CKAP5	chr11	46829625	-	STATH	chr4	70861681	+
intron-3UTR	ENST00000360507	ENST00000371269		ChiTaRS3.1			BE828048	CNPPD1	chr2	220036940	-	DHCR24	chr1	55315429	-
intron-intron	ENST00000360507	ENST00000537443		ChiTaRS3.1			BE828048	CNPPD1	chr2	220036940	-	DHCR24	chr1	55315429	-
intron-intron	ENST00000360507	ENST00000535035		ChiTaRS3.1			BE828048	CNPPD1	chr2	220036940	-	DHCR24	chr1	55315429	-
intron-3UTR	ENST00000409789	ENST00000371269		ChiTaRS3.1			BE828048	CNPPD1	chr2	220036940	-	DHCR24	chr1	55315429	-
intron-intron	ENST00000409789	ENST00000537443		ChiTaRS3.1			BE828048	CNPPD1	chr2	220036940	-	DHCR24	chr1	55315429	-
intron-intron	ENST00000409789	ENST00000535035		ChiTaRS3.1			BE828048	CNPPD1	chr2	220036940	-	DHCR24	chr1	55315429	-
5CDS-intron	ENST00000358598	ENST00000327979		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000358598	ENST00000535356		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000358598	ENST00000045083		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000358598	ENST00000462842		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000392711	ENST00000327979		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000392711	ENST00000535356		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000392711	ENST00000045083		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000392711	ENST00000462842		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000589228	ENST00000327979		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000589228	ENST00000535356		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000589228	ENST00000045083		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000589228	ENST00000462842		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000536854	ENST00000327979		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000536854	ENST00000535356		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000536854	ENST00000045083		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000536854	ENST00000462842		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000586397	ENST00000327979		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000586397	ENST00000535356		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000586397	ENST00000045083		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000586397	ENST00000462842		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000588188	ENST00000327979		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000588188	ENST00000535356		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000588188	ENST00000045083		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
5CDS-intron	ENST00000588188	ENST00000462842		ChiTaRS3.1			DA334350	PRKAR1A	chr17	66518922	+	FAM65C	chr20	49211779	-
intron-intron	ENST00000275605	ENST00000526639		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-3UTR	ENST00000275605	ENST00000527158		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000275605	ENST00000412157		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000275605	ENST00000350887		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000395471	ENST00000526639		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-3UTR	ENST00000395471	ENST00000527158		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000395471	ENST00000412157		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000395471	ENST00000350887		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000459834	ENST00000526639		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-3UTR	ENST00000459834	ENST00000527158		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000459834	ENST00000412157		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
intron-intron	ENST00000459834	ENST00000350887		ChiTaRS3.1			CR936749	PSPH	chr7	56147817	+	SNRNP35	chr12	123956816	-
5UTR-3CDS	ENST00000396838	ENST00000344450		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000396838	ENST00000603453		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000396838	ENST00000605315		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000396838	ENST00000419235		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-5UTR	ENST00000396838	ENST00000605035		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000396838	ENST00000605863		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000396838	ENST00000603290		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000396838	ENST00000604971		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-3CDS	ENST00000414429	ENST00000344450		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000414429	ENST00000603453		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000414429	ENST00000605315		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000414429	ENST00000419235		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-5UTR	ENST00000414429	ENST00000605035		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000414429	ENST00000605863		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000414429	ENST00000603290		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
5UTR-intron	ENST00000414429	ENST00000604971		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-3CDS	ENST00000481934	ENST00000344450		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000481934	ENST00000603453		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000481934	ENST00000605315		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000481934	ENST00000419235		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-5UTR	ENST00000481934	ENST00000605035		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000481934	ENST00000605863		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000481934	ENST00000603290		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000481934	ENST00000604971		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-3CDS	ENST00000439158	ENST00000344450		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000439158	ENST00000603453		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000439158	ENST00000605315		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000439158	ENST00000419235		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-5UTR	ENST00000439158	ENST00000605035		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000439158	ENST00000605863		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000439158	ENST00000603290		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000439158	ENST00000604971		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-3CDS	ENST00000446474	ENST00000344450		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000446474	ENST00000603453		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000446474	ENST00000605315		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000446474	ENST00000419235		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-5UTR	ENST00000446474	ENST00000605035		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000446474	ENST00000605863		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000446474	ENST00000603290		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000446474	ENST00000604971		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-3CDS	ENST00000344279	ENST00000344450		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000344279	ENST00000603453		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000344279	ENST00000605315		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000344279	ENST00000419235		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-5UTR	ENST00000344279	ENST00000605035		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000344279	ENST00000605863		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000344279	ENST00000603290		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
intron-intron	ENST00000344279	ENST00000604971		ChiTaRS3.1			DA350989	ZSCAN31	chr6	28321639	-	DUSP22	chr6	311874	+
Frame-shit	ENST00000340384	ENST00000318602		ChiTaRS3.1			DB150819	TUBB4B	chr9	140136997	+	A2M	chr12	9247668	-
5CDS-intron	ENST00000340384	ENST00000542567		ChiTaRS3.1			DB150819	TUBB4B	chr9	140136997	+	A2M	chr12	9247668	-
5CDS-intron	ENST00000600490	ENST00000318801		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000600490	ENST00000216155		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000600490	ENST00000406293		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-3UTR	ENST00000600490	ENST00000328933		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000600490	ENST00000381535		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000262817	ENST00000318801		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000262817	ENST00000216155		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000262817	ENST00000406293		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-3UTR	ENST00000262817	ENST00000328933		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-intron	ENST00000262817	ENST00000381535		ChiTaRS3.1			AK308714	TMEM59L	chr19	18724750	+	SYNGR1	chr22	39779377	+
5CDS-5UTR	ENST00000491614	ENST00000381602		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000397962		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000309776		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000509513		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000397959		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000381591		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000403354		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000381607		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000402736		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000602682		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000381604		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000491614	ENST00000381584		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000491614	ENST00000558098		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000491614	ENST00000545619		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000491614	ENST00000535374		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000491614	ENST00000473115		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000381602		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000397962		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000309776		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000509513		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000397959		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000381591		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000403354		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000381607		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000402736		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000602682		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000381604		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378937	ENST00000381584		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378937	ENST00000558098		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378937	ENST00000545619		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378937	ENST00000535374		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378937	ENST00000473115		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000381602		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000397962		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000309776		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000509513		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000397959		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000381591		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000403354		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000381607		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000402736		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000602682		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000381604		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000537776	ENST00000381584		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000537776	ENST00000558098		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000537776	ENST00000545619		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000537776	ENST00000535374		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000537776	ENST00000473115		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000381602		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000397962		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000309776		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000509513		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000397959		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000381591		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000403354		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000381607		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000402736		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000602682		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000381604		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-5UTR	ENST00000378952	ENST00000381584		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-intron	ENST00000378952	ENST00000558098		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-intron	ENST00000378952	ENST00000545619		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-intron	ENST00000378952	ENST00000535374		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5UTR-intron	ENST00000378952	ENST00000473115		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000381602		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000397962		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000309776		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000509513		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000397959		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000381591		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000403354		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000381607		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000402736		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000602682		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000381604		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378940	ENST00000381584		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378940	ENST00000558098		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378940	ENST00000545619		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378940	ENST00000535374		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378940	ENST00000473115		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000381602		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000397962		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000309776		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000509513		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000397959		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000381591		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000403354		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000381607		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000402736		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000602682		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000381604		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-5UTR	ENST00000378927	ENST00000381584		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378927	ENST00000558098		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378927	ENST00000545619		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378927	ENST00000535374		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
5CDS-intron	ENST00000378927	ENST00000473115		ChiTaRS3.1			DC322982	NUDT5	chr10	12228228	-	ZMYND11	chr10	225932	+
3UTR-3CDS	ENST00000313949	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
3UTR-5UTR	ENST00000313949	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-3CDS	ENST00000371098	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-5UTR	ENST00000371098	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
3UTR-3CDS	ENST00000371075	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
3UTR-5UTR	ENST00000371075	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000371100	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000371100	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-3CDS	ENST00000371099	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-5UTR	ENST00000371099	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000371102	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000371102	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
3UTR-3CDS	ENST00000464624	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
3UTR-5UTR	ENST00000464624	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-3CDS	ENST00000306120	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-5UTR	ENST00000306120	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000371095	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000371095	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000371085	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000371085	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000354359	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000354359	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000265620	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000265620	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
Frame-shit	ENST00000306090	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
5CDS-5UTR	ENST00000306090	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-3CDS	ENST00000371081	ENST00000396842		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
intron-5UTR	ENST00000371081	ENST00000432764		ChiTaRS3.1			BQ308361	GNAS	chr20	57485748	+	EAF1	chr3	15469296	+
3UTR-3CDS	ENST00000305885	ENST00000260128		ChiTaRS3.1			AW452409	FEN1	chr11	61564481	-	SULF1	chr8	70512941	-
3UTR-3CDS	ENST00000305885	ENST00000458141		ChiTaRS3.1			AW452409	FEN1	chr11	61564481	-	SULF1	chr8	70512941	-
3UTR-3CDS	ENST00000305885	ENST00000402687		ChiTaRS3.1			AW452409	FEN1	chr11	61564481	-	SULF1	chr8	70512941	-
3UTR-3CDS	ENST00000305885	ENST00000419716		ChiTaRS3.1			AW452409	FEN1	chr11	61564481	-	SULF1	chr8	70512941	-
3UTR-3UTR	ENST00000305885	ENST00000521946		ChiTaRS3.1			AW452409	FEN1	chr11	61564481	-	SULF1	chr8	70512941	-
intron-5UTR	ENST00000351388	ENST00000455485		ChiTaRS3.1			AV749162	GH1	chr17	61994708	-	GUSBP11	chr22	24025998	-
intron-5UTR	ENST00000458650	ENST00000455485		ChiTaRS3.1			AV749162	GH1	chr17	61994708	-	GUSBP11	chr22	24025998	-
intron-5UTR	ENST00000323322	ENST00000455485		ChiTaRS3.1			AV749162	GH1	chr17	61994708	-	GUSBP11	chr22	24025998	-
intron-5UTR	ENST00000342364	ENST00000455485		ChiTaRS3.1			AV749162	GH1	chr17	61994708	-	GUSBP11	chr22	24025998	-
3UTR-intron	ENST00000517503	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000517503	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000292494	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000292494	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000429120	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000429120	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000521699	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000521699	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000520531	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000520531	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000520466	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000520466	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000521003	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000521003	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000522528	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000522528	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000522971	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000522971	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000519611	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000519611	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000521182	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000521182	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000519546	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000519546	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000523847	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000523847	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000522024	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
3UTR-intron	ENST00000522024	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000519615	ENST00000375001		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-intron	ENST00000519615	ENST00000467052		ChiTaRS3.1			CB998051	LY6E	chr8	144103272	+	COL15A1	chr9	101739172	-
intron-5UTR	ENST00000390237	ENST00000339399		ChiTaRS3.1			BF875416	IGKC	chr2	89156870	-	ANP32B	chr9	100745818	+
intron-intron	ENST00000390237	ENST00000473205		ChiTaRS3.1			BF875416	IGKC	chr2	89156870	-	ANP32B	chr9	100745818	+
intron-5UTR	ENST00000579226	ENST00000579226		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000217652		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000578611		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000579226	ENST00000585090		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000579226	ENST00000580887		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000536605		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000579226		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000217652		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000578611		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000217652	ENST00000585090		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000217652	ENST00000580887		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000536605		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000579226		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000217652		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000578611		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000578611	ENST00000585090		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000578611	ENST00000580887		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000536605		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000579226		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000217652		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000578611		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000585090	ENST00000585090		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000585090	ENST00000580887		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000536605		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000579226		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000217652		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000578611		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000580887	ENST00000585090		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000580887	ENST00000580887		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000536605		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000579226		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000217652		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000578611		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000536605	ENST00000585090		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000536605	ENST00000580887		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000536605		ChiTaRS3.1			BF895626	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-3CDS	ENST00000462405	ENST00000398844		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000462405	ENST00000322887		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370425	ENST00000398844		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370425	ENST00000322887		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000294696	ENST00000398844		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000294696	ENST00000322887		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370424	ENST00000398844		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370424	ENST00000322887		ChiTaRS3.1			DW418469	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000477396	ENST00000399448		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3CDS	ENST00000477396	ENST00000447931		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3CDS	ENST00000477396	ENST00000318974		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3UTR	ENST00000477396	ENST00000456013		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3UTR	ENST00000477396	ENST00000539029		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3CDS	ENST00000298545	ENST00000399448		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3CDS	ENST00000298545	ENST00000447931		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3CDS	ENST00000298545	ENST00000318974		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3UTR	ENST00000298545	ENST00000456013		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
intron-3UTR	ENST00000298545	ENST00000539029		ChiTaRS3.1			BF922042	AK8	chr9	135648788	-	PTPN6	chr12	7070036	+
5CDS-5UTR	ENST00000408749	ENST00000381341		ChiTaRS3.1			DA765942	RNU6ATAC	chr9	137029560	-	DDX1	chr2	15731992	+
5CDS-5UTR	ENST00000408749	ENST00000233084		ChiTaRS3.1			DA765942	RNU6ATAC	chr9	137029560	-	DDX1	chr2	15731992	+
5CDS-3UTR	ENST00000417172	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000417172	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000361388	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000361388	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000422748	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000422748	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000361675	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000361675	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000361901	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000361901	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000393118	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000393118	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000495522	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000495522	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000424922	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000424922	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000543443	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
5CDS-3UTR	ENST00000543443	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
intron-3UTR	ENST00000466704	ENST00000361427		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
intron-3UTR	ENST00000466704	ENST00000493418		ChiTaRS3.1			CN402990	CALD1	chr7	134617791	+	HMGN2	chr1	26801800	+
intron-intron	ENST00000484910	ENST00000494674		ChiTaRS3.1			AU143392	RD3	chr1	211665209	-	PRPF4B	chr6	4032747	+
intron-intron	ENST00000484910	ENST00000337659		ChiTaRS3.1			AU143392	RD3	chr1	211665209	-	PRPF4B	chr6	4032747	+
intron-intron	ENST00000484910	ENST00000538861		ChiTaRS3.1			AU143392	RD3	chr1	211665209	-	PRPF4B	chr6	4032747	+
intron-intron	ENST00000367002	ENST00000494674		ChiTaRS3.1			AU143392	RD3	chr1	211665209	-	PRPF4B	chr6	4032747	+
intron-intron	ENST00000367002	ENST00000337659		ChiTaRS3.1			AU143392	RD3	chr1	211665209	-	PRPF4B	chr6	4032747	+
intron-intron	ENST00000367002	ENST00000538861		ChiTaRS3.1			AU143392	RD3	chr1	211665209	-	PRPF4B	chr6	4032747	+
intron-3CDS	ENST00000369426	ENST00000366574		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000369426	ENST00000360064		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000369426	ENST00000542537		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000369426	ENST00000609119		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000235521	ENST00000366574		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000235521	ENST00000360064		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000235521	ENST00000542537		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000235521	ENST00000609119		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000537870	ENST00000366574		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000537870	ENST00000360064		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000537870	ENST00000542537		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000537870	ENST00000609119		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000497761	ENST00000366574		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000497761	ENST00000360064		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000497761	ENST00000542537		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000497761	ENST00000609119		ChiTaRS3.1			AK294729	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
In-frame	ENST00000316737	ENST00000603302		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
In-frame	ENST00000316737	ENST00000403312		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
In-frame	ENST00000316737	ENST00000309522		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
In-frame	ENST00000316737	ENST00000505878		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
In-frame	ENST00000316737	ENST00000454409		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
5CDS-intron	ENST00000316737	ENST00000510728		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000592955	ENST00000603302		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000592955	ENST00000403312		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000592955	ENST00000309522		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000592955	ENST00000505878		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000592955	ENST00000454409		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-intron	ENST00000592955	ENST00000510728		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000590327	ENST00000603302		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000590327	ENST00000403312		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000590327	ENST00000309522		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000590327	ENST00000505878		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-3CDS	ENST00000590327	ENST00000454409		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-intron	ENST00000590327	ENST00000510728		ChiTaRS3.1			AF133424	TSPAN16	chr19	11437672	+	HADH	chr4	108940694	+
intron-5UTR	ENST00000363840	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363840	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363840	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000363840	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363840	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000365524	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000365524	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000365524	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000365524	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000365524	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000364822	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000364822	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000364822	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000364822	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000364822	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000363859	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363859	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363859	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000363859	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363859	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000385578	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000385578	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000385578	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000385578	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000385578	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000363146	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363146	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363146	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000363146	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000363146	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000364084	ENST00000392350		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000364084	ENST00000325795		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000364084	ENST00000496543		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-5UTR	ENST00000364084	ENST00000392349		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
intron-intron	ENST00000364084	ENST00000409519		ChiTaRS3.1			DA439985	GAS5	chr1	173833971	-	ORMDL1	chr2	190649061	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			X98710	COL1A1	chr17	48274370	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			X98710	COL1A1	chr17	48274370	-	PDGFB	chr22	39631879	-
intron-3CDS	ENST00000398411	ENST00000358136		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000398411	ENST00000356315		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000496628		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000543766		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000471923		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000543710		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000376925	ENST00000358136		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000376925	ENST00000356315		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000496628		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000543766		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000471923		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000543710		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000398409	ENST00000358136		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000398409	ENST00000356315		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000496628		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000543766		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000471923		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000543710		ChiTaRS3.1			AI377029	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000261488	ENST00000368547		ChiTaRS3.1			AW518107	ENOX1	chr13	43912392	+	ECHS1	chr10	135178227	-
intron-3CDS	ENST00000412891	ENST00000368547		ChiTaRS3.1			AW518107	ENOX1	chr13	43912392	+	ECHS1	chr10	135178227	-
intron-3CDS	ENST00000540032	ENST00000368547		ChiTaRS3.1			AW518107	ENOX1	chr13	43912392	+	ECHS1	chr10	135178227	-
intron-3CDS	ENST00000482207	ENST00000368547		ChiTaRS3.1			AW518107	ENOX1	chr13	43912392	+	ECHS1	chr10	135178227	-
5UTR-intron	ENST00000217159	ENST00000446537		ChiTaRS3.1			DA665972	SLCO4A1	chr20	61273906	+	UBOX5-AS1	chr20	3104053	-
5UTR-intron	ENST00000217159	ENST00000454019		ChiTaRS3.1			DA665972	SLCO4A1	chr20	61273906	+	UBOX5-AS1	chr20	3104053	-
intron-intron	ENST00000370507	ENST00000446537		ChiTaRS3.1			DA665972	SLCO4A1	chr20	61273906	+	UBOX5-AS1	chr20	3104053	-
intron-intron	ENST00000370507	ENST00000454019		ChiTaRS3.1			DA665972	SLCO4A1	chr20	61273906	+	UBOX5-AS1	chr20	3104053	-
intron-intron	ENST00000470412	ENST00000446537		ChiTaRS3.1			DA665972	SLCO4A1	chr20	61273906	+	UBOX5-AS1	chr20	3104053	-
intron-intron	ENST00000470412	ENST00000454019		ChiTaRS3.1			DA665972	SLCO4A1	chr20	61273906	+	UBOX5-AS1	chr20	3104053	-
intron-intron	ENST00000296417	ENST00000534312		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000395850		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000533403		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000351554		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000415002		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000445143		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000426650		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000437761		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000527577		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000528700		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000534312		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000395850		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000533403		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000351554		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000415002		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000445143		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000426650		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000437761		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000527577		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000528700		ChiTaRS3.1			BC050619	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000375098	ENST00000300146		ChiTaRS3.1			BF911667	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000478530	ENST00000300146		ChiTaRS3.1			BF911667	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000342043	ENST00000300146		ChiTaRS3.1			BF911667	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000341469	ENST00000300146		ChiTaRS3.1			BF911667	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000538344	ENST00000300146		ChiTaRS3.1			BF911667	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
In-frame	ENST00000429243	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000429243	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
5CDS-intron	ENST00000429243	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000549924	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000549924	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
5CDS-intron	ENST00000549924	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000551003	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000551003	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
5CDS-intron	ENST00000551003	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000549068	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000549068	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-intron	ENST00000549068	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000549740	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000549740	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
5CDS-intron	ENST00000549740	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000546581	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000546581	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-intron	ENST00000546581	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000549581	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000549581	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-intron	ENST00000549581	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000547368	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000547368	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
5CDS-intron	ENST00000547368	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000379786	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-3CDS	ENST00000379786	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
intron-intron	ENST00000379786	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000549135	ENST00000544301		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
In-frame	ENST00000549135	ENST00000224237		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
5CDS-intron	ENST00000549135	ENST00000485947		ChiTaRS3.1			BQ573942	PRR13	chr12	53837289	-	VIM	chr10	17277363	-
Frame-shit	ENST00000229270	ENST00000435706		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
Frame-shit	ENST00000229270	ENST00000264331		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-intron	ENST00000229270	ENST00000542520		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-intron	ENST00000229270	ENST00000540199		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-intron	ENST00000229270	ENST00000475717		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
Frame-shit	ENST00000396705	ENST00000435706		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
Frame-shit	ENST00000396705	ENST00000264331		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-intron	ENST00000396705	ENST00000542520		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-intron	ENST00000396705	ENST00000540199		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-intron	ENST00000396705	ENST00000475717		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-3CDS	ENST00000488464	ENST00000435706		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-3CDS	ENST00000488464	ENST00000264331		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-intron	ENST00000488464	ENST00000542520		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-intron	ENST00000488464	ENST00000540199		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-intron	ENST00000488464	ENST00000475717		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-3CDS	ENST00000535434	ENST00000435706		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-3CDS	ENST00000535434	ENST00000264331		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-intron	ENST00000535434	ENST00000542520		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-intron	ENST00000535434	ENST00000540199		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
intron-intron	ENST00000535434	ENST00000475717		ChiTaRS3.1			BC054482	TPI1	chr12	6976792	+	TOP2B	chr3	25661417	-
5CDS-3UTR	ENST00000539801	ENST00000558401		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-intron	ENST00000539801	ENST00000559916		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-intron	ENST00000539801	ENST00000544417		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-3UTR	ENST00000539801	ENST00000559220		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-3UTR	ENST00000381652	ENST00000558401		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-intron	ENST00000381652	ENST00000559916		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-intron	ENST00000381652	ENST00000544417		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-3UTR	ENST00000381652	ENST00000559220		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-3UTR	ENST00000544510	ENST00000558401		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-intron	ENST00000544510	ENST00000559916		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-intron	ENST00000544510	ENST00000544417		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
5CDS-3UTR	ENST00000544510	ENST00000559220		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
intron-3UTR	ENST00000487310	ENST00000558401		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
intron-intron	ENST00000487310	ENST00000559916		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
intron-intron	ENST00000487310	ENST00000544417		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
intron-3UTR	ENST00000487310	ENST00000559220		ChiTaRS3.1			BF819555	JAK2	chr9	5044501	+	B2M	chr15	45010234	+
In-frame	ENST00000394152	ENST00000437600		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000394152	ENST00000292538		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000394152	ENST00000393824		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000394152	ENST00000547394		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000360264		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000425244		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000292535		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000549414		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000556210		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000550008		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000394152	ENST00000546411		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-3UTR	ENST00000394152	ENST00000560541		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000334715	ENST00000437600		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000334715	ENST00000292538		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000334715	ENST00000393824		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
In-frame	ENST00000334715	ENST00000547394		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000360264		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000425244		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000292535		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000549414		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000556210		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000550008		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-intron	ENST00000334715	ENST00000546411		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5CDS-3UTR	ENST00000334715	ENST00000560541		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000262941	ENST00000437600		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000262941	ENST00000292538		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000262941	ENST00000393824		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000262941	ENST00000547394		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000360264		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000425244		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000292535		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000549414		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000556210		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000550008		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000262941	ENST00000546411		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3UTR	ENST00000262941	ENST00000560541		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000466948	ENST00000437600		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000466948	ENST00000292538		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000466948	ENST00000393824		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3CDS	ENST00000466948	ENST00000547394		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000360264		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000425244		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000292535		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000549414		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000556210		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000550008		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-intron	ENST00000466948	ENST00000546411		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
intron-3UTR	ENST00000466948	ENST00000560541		ChiTaRS3.1			BC036852	ZSCAN25	chr7	99221804	+	CUX1	chr7	101916634	+
5UTR-intron	ENST00000374706	ENST00000513488		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
5UTR-5UTR	ENST00000374706	ENST00000362063		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
5UTR-5UTR	ENST00000374706	ENST00000430262		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-intron	ENST00000265375	ENST00000513488		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000265375	ENST00000362063		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000265375	ENST00000430262		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-intron	ENST00000339497	ENST00000513488		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000339497	ENST00000362063		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000339497	ENST00000430262		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-intron	ENST00000374704	ENST00000513488		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000374704	ENST00000362063		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000374704	ENST00000430262		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-intron	ENST00000492478	ENST00000513488		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000492478	ENST00000362063		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-5UTR	ENST00000492478	ENST00000430262		ChiTaRS3.1			DB028252	CCNY	chr10	35539559	+	ZNF652	chr17	47395347	-
intron-3UTR	ENST00000261883	ENST00000325874		ChiTaRS3.1			BQ183535	CILP	chr15	65489045	+	RAB11FIP4	chr17	29865060	-
intron-intron	ENST00000261883	ENST00000581280		ChiTaRS3.1			BQ183535	CILP	chr15	65489045	+	RAB11FIP4	chr17	29865060	-
intron-intron	ENST00000261883	ENST00000394744		ChiTaRS3.1			BQ183535	CILP	chr15	65489045	+	RAB11FIP4	chr17	29865060	-
5UTR-3CDS	ENST00000419197	ENST00000357485		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-5UTR	ENST00000419197	ENST00000454558		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
3UTR-3CDS	ENST00000526888	ENST00000357485		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
3UTR-5UTR	ENST00000526888	ENST00000454558		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-3CDS	ENST00000527958	ENST00000357485		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-5UTR	ENST00000527958	ENST00000454558		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-3CDS	ENST00000529887	ENST00000357485		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-5UTR	ENST00000529887	ENST00000454558		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-3CDS	ENST00000530272	ENST00000357485		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
5UTR-5UTR	ENST00000530272	ENST00000454558		ChiTaRS3.1			CT002325	PAFAH1B2	chr11	117015134	+	ARID5A	chr2	97213139	+
intron-3CDS	ENST00000318325	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000318325	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370241	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370241	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370242	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370242	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000299179	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000299179	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000342071	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000342071	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370236	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370236	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000493646	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000493646	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000477279	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000477279	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000318364	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000318364	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370234	ENST00000257013		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370234	ENST00000464369		ChiTaRS3.1			BF111822	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
Frame-shit	ENST00000260379	ENST00000343823		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
Frame-shit	ENST00000260379	ENST00000250635		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
Frame-shit	ENST00000260379	ENST00000545394		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
Frame-shit	ENST00000260379	ENST00000428278		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
Frame-shit	ENST00000260379	ENST00000521652		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
5CDS-intron	ENST00000260379	ENST00000524263		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000357790	ENST00000343823		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000357790	ENST00000250635		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000357790	ENST00000545394		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000357790	ENST00000428278		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000357790	ENST00000521652		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-intron	ENST00000357790	ENST00000524263		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000560274	ENST00000343823		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000560274	ENST00000250635		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000560274	ENST00000545394		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000560274	ENST00000428278		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000560274	ENST00000521652		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-intron	ENST00000560274	ENST00000524263		ChiTaRS3.1			CX751919	RPLP1	chr15	69746060	+	ASH2L	chr8	37985814	+
intron-3CDS	ENST00000467803	ENST00000484457		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000467803	ENST00000538892		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3UTR	ENST00000467803	ENST00000283627		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-intron	ENST00000467803	ENST00000538181		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000467803	ENST00000446237		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000467803	ENST00000507198		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000467803	ENST00000542085		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000447325	ENST00000484457		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000447325	ENST00000538892		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3UTR	ENST00000447325	ENST00000283627		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-intron	ENST00000447325	ENST00000538181		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000447325	ENST00000446237		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000447325	ENST00000507198		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000447325	ENST00000542085		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
In-frame	ENST00000321256	ENST00000484457		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
In-frame	ENST00000321256	ENST00000538892		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-3UTR	ENST00000321256	ENST00000283627		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-intron	ENST00000321256	ENST00000538181		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-5UTR	ENST00000321256	ENST00000446237		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-5UTR	ENST00000321256	ENST00000507198		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-5UTR	ENST00000321256	ENST00000542085		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
In-frame	ENST00000427641	ENST00000484457		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
In-frame	ENST00000427641	ENST00000538892		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-3UTR	ENST00000427641	ENST00000283627		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-intron	ENST00000427641	ENST00000538181		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-5UTR	ENST00000427641	ENST00000446237		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-5UTR	ENST00000427641	ENST00000507198		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
5CDS-5UTR	ENST00000427641	ENST00000542085		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000452404	ENST00000484457		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000452404	ENST00000538892		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3UTR	ENST00000452404	ENST00000283627		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-intron	ENST00000452404	ENST00000538181		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000452404	ENST00000446237		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000452404	ENST00000507198		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000452404	ENST00000542085		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000422610	ENST00000484457		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3CDS	ENST00000422610	ENST00000538892		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-3UTR	ENST00000422610	ENST00000283627		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-intron	ENST00000422610	ENST00000538181		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000422610	ENST00000446237		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000422610	ENST00000507198		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
intron-5UTR	ENST00000422610	ENST00000542085		ChiTaRS3.1			DA659977	NCBP2	chr3	196669297	-	FBXL2	chr3	33400769	+
3UTR-3UTR	ENST00000339514	ENST00000367328		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000339514	ENST00000358517		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000392318	ENST00000367328		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000392318	ENST00000358517		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000304164	ENST00000367328		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000304164	ENST00000358517		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000392316	ENST00000367328		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000392316	ENST00000358517		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000439065	ENST00000367328		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
3UTR-3UTR	ENST00000439065	ENST00000358517		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
intron-3UTR	ENST00000496992	ENST00000367328		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
intron-3UTR	ENST00000496992	ENST00000358517		ChiTaRS3.1			BP393033	MYO1B	chr2	192289832	+	PLEKHG1	chr6	151164315	+
intron-3UTR	ENST00000415083	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
intron-3UTR	ENST00000542420	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
intron-3UTR	ENST00000542743	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
intron-3UTR	ENST00000539849	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
intron-3UTR	ENST00000269137	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
intron-3UTR	ENST00000545952	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
intron-3UTR	ENST00000585241	ENST00000369535		ChiTaRS3.1			BG896663	SS18	chr18	23597748	-	NRAS	chr1	115247345	-
3UTR-3CDS	ENST00000348261	ENST00000300527		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000348261	ENST00000310645		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000348261	ENST00000357838		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000348261	ENST00000409416		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000348261	ENST00000397763		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000348261	ENST00000460886		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-3CDS	ENST00000358590	ENST00000300527		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000358590	ENST00000310645		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000358590	ENST00000357838		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000358590	ENST00000409416		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000358590	ENST00000397763		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
3UTR-intron	ENST00000358590	ENST00000460886		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
intron-3CDS	ENST00000565831	ENST00000300527		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
intron-intron	ENST00000565831	ENST00000310645		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
intron-intron	ENST00000565831	ENST00000357838		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
intron-intron	ENST00000565831	ENST00000409416		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
intron-intron	ENST00000565831	ENST00000397763		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
intron-intron	ENST00000565831	ENST00000460886		ChiTaRS3.1			AI184928	CACNA1H	chr16	1271471	-	COL6A2	chr21	47552150	-
5UTR-3CDS	ENST00000332149	ENST00000398907		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000332149	ENST00000398905		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000332149	ENST00000288319		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398897		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398911		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398910		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000417133		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000442448		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000453032		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398919		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000429727		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000485493		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000398907		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000398905		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000288319		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398897		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398911		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398910		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000417133		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000442448		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000453032		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398919		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000429727		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000485493		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000398907		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000398905		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000288319		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398897		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398911		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398910		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000417133		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000442448		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000453032		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398919		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000429727		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000485493		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000398907		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000398905		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000288319		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398897		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398911		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398910		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000417133		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000442448		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000453032		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398919		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000429727		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000485493		ChiTaRS3.1			DQ204772	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000239462	ENST00000373910		ChiTaRS3.1			AW363598	TNN	chr1	175106155	-	UBE2D1	chr10	60128480	+
intron-5UTR	ENST00000273038	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000273038	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000273038	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000273038	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000273038	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000273038	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000273038	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-5UTR	ENST00000430365	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-5UTR	ENST00000430365	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-5UTR	ENST00000430365	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-intron	ENST00000430365	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-5UTR	ENST00000430365	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-5UTR	ENST00000430365	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
5CDS-intron	ENST00000430365	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000404339	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000404339	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000404339	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000404339	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000404339	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000404339	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000404339	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000480288	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000480288	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000480288	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000480288	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000480288	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000480288	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000480288	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000413604	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000413604	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000413604	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000413604	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000413604	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000413604	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000413604	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000451674	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000451674	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000451674	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000451674	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000451674	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000451674	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000451674	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000424529	ENST00000392415		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000424529	ENST00000410062		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000424529	ENST00000602710		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000424529	ENST00000602837		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000424529	ENST00000602959		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-5UTR	ENST00000424529	ENST00000602475		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
intron-intron	ENST00000424529	ENST00000602632		ChiTaRS3.1			BG756114	VGLL4	chr3	11684911	-	UBE2E3	chr2	181846742	+
Frame-shit	ENST00000341547	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000341547	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000341547	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000341547	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000357063	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000357063	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000357063	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000357063	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000377534	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000377534	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000377534	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000377534	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000321797	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000321797	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000321797	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000321797	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000526202	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000526202	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000526202	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000526202	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000465261	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000465261	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000465261	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000465261	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-3CDS	ENST00000605961	ENST00000442011		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-3CDS	ENST00000605961	ENST00000305126		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-intron	ENST00000605961	ENST00000508076		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-intron	ENST00000605961	ENST00000504185		ChiTaRS3.1			BE736691	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000299575	ENST00000272238		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
5CDS-intron	ENST00000299575	ENST00000381661		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
3UTR-intron	ENST00000539819	ENST00000272238		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
3UTR-intron	ENST00000539819	ENST00000381661		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
5CDS-intron	ENST00000564241	ENST00000272238		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
5CDS-intron	ENST00000564241	ENST00000381661		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
5CDS-intron	ENST00000566488	ENST00000272238		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
5CDS-intron	ENST00000566488	ENST00000381661		ChiTaRS3.1			AK026926	ATMIN	chr16	81077216	+	ATP6V1C2	chr2	10952873	-
In-frame	ENST00000566983	ENST00000447866		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000566983	ENST00000368356		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000566983	ENST00000487002		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000566983	ENST00000356657		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000268261	ENST00000447866		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000268261	ENST00000368356		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000268261	ENST00000487002		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000268261	ENST00000356657		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000539622	ENST00000447866		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000539622	ENST00000368356		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000539622	ENST00000487002		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000539622	ENST00000356657		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000537352	ENST00000447866		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000537352	ENST00000368356		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000537352	ENST00000487002		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000537352	ENST00000356657		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000569958	ENST00000447866		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000569958	ENST00000368356		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000569958	ENST00000487002		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000569958	ENST00000356657		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000565837	ENST00000447866		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000565837	ENST00000368356		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-intron	ENST00000565837	ENST00000487002		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-intron	ENST00000565837	ENST00000356657		ChiTaRS3.1			BM809442	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-5UTR	ENST00000453363	ENST00000341376		ChiTaRS3.1			AW949743	CSH1	chr17	61972841	-	NFYA	chr6	41040751	+
intron-5UTR	ENST00000453363	ENST00000353205		ChiTaRS3.1			AW949743	CSH1	chr17	61972841	-	NFYA	chr6	41040751	+
intron-5UTR	ENST00000316193	ENST00000341376		ChiTaRS3.1			AW949743	CSH1	chr17	61972841	-	NFYA	chr6	41040751	+
intron-5UTR	ENST00000316193	ENST00000353205		ChiTaRS3.1			AW949743	CSH1	chr17	61972841	-	NFYA	chr6	41040751	+
intron-5UTR	ENST00000329882	ENST00000341376		ChiTaRS3.1			AW949743	CSH1	chr17	61972841	-	NFYA	chr6	41040751	+
intron-5UTR	ENST00000329882	ENST00000353205		ChiTaRS3.1			AW949743	CSH1	chr17	61972841	-	NFYA	chr6	41040751	+
5UTR-5UTR	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893471	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-3CDS	ENST00000368708	ENST00000216190		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368708	ENST00000478547		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368708	ENST00000541106		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368708	ENST00000405442		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-3CDS	ENST00000487430	ENST00000216190		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000487430	ENST00000478547		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000487430	ENST00000541106		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000487430	ENST00000405442		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-3CDS	ENST00000497140	ENST00000216190		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000497140	ENST00000478547		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000497140	ENST00000541106		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000497140	ENST00000405442		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-3CDS	ENST00000368710	ENST00000216190		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368710	ENST00000478547		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368710	ENST00000541106		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368710	ENST00000405442		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-3CDS	ENST00000368709	ENST00000216190		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368709	ENST00000478547		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368709	ENST00000541106		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368709	ENST00000405442		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-3CDS	ENST00000368707	ENST00000216190		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368707	ENST00000478547		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368707	ENST00000541106		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000368707	ENST00000405442		ChiTaRS3.1			BE122841	S100A2	chr1	153536246	+	EIF3D	chr22	36908615	+
intron-intron	ENST00000524555	ENST00000406870		ChiTaRS3.1			BG567713	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-intron	ENST00000524555	ENST00000232014		ChiTaRS3.1			BG567713	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-intron	ENST00000524555	ENST00000450123		ChiTaRS3.1			BG567713	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-intron	ENST00000524555	ENST00000496823		ChiTaRS3.1			BG567713	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-3CDS	ENST00000356079	ENST00000377102		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000356079	ENST00000377104		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000356079	ENST00000540649		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000461371	ENST00000377102		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000461371	ENST00000377104		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000461371	ENST00000540649		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000429815	ENST00000377102		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000429815	ENST00000377104		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
intron-3CDS	ENST00000429815	ENST00000540649		ChiTaRS3.1			BF756284	CYP20A1	chr2	204122222	-	SPRY2	chr13	80910961	-
5CDS-3UTR	ENST00000367871	ENST00000318130		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
5CDS-intron	ENST00000367871	ENST00000367512		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
5CDS-intron	ENST00000367871	ENST00000466392		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
5CDS-3UTR	ENST00000237264	ENST00000318130		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
5CDS-intron	ENST00000237264	ENST00000367512		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
5CDS-intron	ENST00000237264	ENST00000466392		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
intron-3UTR	ENST00000477527	ENST00000318130		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
intron-intron	ENST00000477527	ENST00000367512		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
intron-intron	ENST00000477527	ENST00000466392		ChiTaRS3.1			BF919684	TBPL1	chr6	134301303	+	EDEM3	chr1	184662824	-
intron-3CDS	ENST00000466266	ENST00000290378		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000466266	ENST00000557860		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000428286	ENST00000290378		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000428286	ENST00000557860		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000376718	ENST00000290378		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000376718	ENST00000557860		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000443509	ENST00000290378		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000443509	ENST00000557860		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000223609	ENST00000290378		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000223609	ENST00000557860		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000376713	ENST00000290378		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000376713	ENST00000557860		ChiTaRS3.1			AW962398	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
3UTR-3UTR	ENST00000373826	ENST00000263277		ChiTaRS3.1			AK026009	RAB42	chr1	28920812	+	EHD2	chr19	48245733	+
3UTR-intron	ENST00000373826	ENST00000538399		ChiTaRS3.1			AK026009	RAB42	chr1	28920812	+	EHD2	chr19	48245733	+
3UTR-intron	ENST00000373826	ENST00000540884		ChiTaRS3.1			AK026009	RAB42	chr1	28920812	+	EHD2	chr19	48245733	+
5CDS-3UTR	ENST00000465518	ENST00000263277		ChiTaRS3.1			AK026009	RAB42	chr1	28920812	+	EHD2	chr19	48245733	+
5CDS-intron	ENST00000465518	ENST00000538399		ChiTaRS3.1			AK026009	RAB42	chr1	28920812	+	EHD2	chr19	48245733	+
5CDS-intron	ENST00000465518	ENST00000540884		ChiTaRS3.1			AK026009	RAB42	chr1	28920812	+	EHD2	chr19	48245733	+
intron-3UTR	ENST00000540486	ENST00000306156		ChiTaRS3.1			D81134	TRAPPC1	chr17	7833821	-	PRKCE	chr2	46414673	+
intron-intron	ENST00000540486	ENST00000467135		ChiTaRS3.1			D81134	TRAPPC1	chr17	7833821	-	PRKCE	chr2	46414673	+
intron-intron	ENST00000540486	ENST00000394874		ChiTaRS3.1			D81134	TRAPPC1	chr17	7833821	-	PRKCE	chr2	46414673	+
intron-3UTR	ENST00000303731	ENST00000306156		ChiTaRS3.1			D81134	TRAPPC1	chr17	7833821	-	PRKCE	chr2	46414673	+
intron-intron	ENST00000303731	ENST00000467135		ChiTaRS3.1			D81134	TRAPPC1	chr17	7833821	-	PRKCE	chr2	46414673	+
intron-intron	ENST00000303731	ENST00000394874		ChiTaRS3.1			D81134	TRAPPC1	chr17	7833821	-	PRKCE	chr2	46414673	+
Frame-shit	ENST00000265843	ENST00000371657		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000396059		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000371674		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000371677		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000340309		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000420027		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000415862		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000443411	ENST00000371657		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000396059		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000371674		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000371677		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000340309		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000420027		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000415862		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000428840	ENST00000371657		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000396059		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000371674		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000371677		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000340309		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000420027		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000415862		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
Frame-shit	ENST00000525344	ENST00000371657		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000396059		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000371674		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000371677		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000340309		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000420027		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000415862		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000524840	ENST00000371657		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000396059		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000371674		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000371677		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000340309		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000420027		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000415862		ChiTaRS3.1			CD101703	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000359486	ENST00000456845		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000359486	ENST00000412303		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000359486	ENST00000456397		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000359486	ENST00000397070		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-5UTR	ENST00000359486	ENST00000522434		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000456845		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000412303		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000456397		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000397070		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-5UTR	ENST00000335626	ENST00000522434		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000456845		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000412303		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000456397		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000397070		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-5UTR	ENST00000404876	ENST00000522434		ChiTaRS3.1			BE714945	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15915	COL1A1	chr17	48265236	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15915	COL1A1	chr17	48265236	-	PDGFB	chr22	39631879	-
5CDS-5UTR	ENST00000184266	ENST00000270625		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-5UTR	ENST00000184266	ENST00000596873		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-5UTR	ENST00000184266	ENST00000594493		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-intron	ENST00000184266	ENST00000599561		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-5UTR	ENST00000485064	ENST00000270625		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-5UTR	ENST00000485064	ENST00000596873		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-5UTR	ENST00000485064	ENST00000594493		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
5CDS-intron	ENST00000485064	ENST00000599561		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
intron-5UTR	ENST00000492739	ENST00000270625		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
intron-5UTR	ENST00000492739	ENST00000596873		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
intron-5UTR	ENST00000492739	ENST00000594493		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
intron-intron	ENST00000492739	ENST00000599561		ChiTaRS3.1			BM822653	NDUFB4	chr3	120320086	+	RPS11	chr19	49999688	+
intron-3CDS	ENST00000403263	ENST00000367302		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367296		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000295624		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367297		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367300		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367295		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-intron	ENST00000403263	ENST00000469130		ChiTaRS3.1			AU125014	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
3UTR-3UTR	ENST00000545844	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000545844	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000567887	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000567887	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000372915	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000372915	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000361689	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000361689	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000539005	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000539005	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000317713	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000317713	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000564288	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000564288	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-3UTR	ENST00000289893	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
3UTR-intron	ENST00000289893	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-3UTR	ENST00000536367	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-intron	ENST00000536367	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-3UTR	ENST00000484793	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-intron	ENST00000484793	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-3UTR	ENST00000602421	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-intron	ENST00000602421	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-3UTR	ENST00000476350	ENST00000477717		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-intron	ENST00000476350	ENST00000496845		ChiTaRS3.1			BE766894	MACF1	chr1	39951480	+	ST6GALNAC5	chr1	77530094	+
intron-intron	ENST00000367651	ENST00000545294		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-3UTR	ENST00000367651	ENST00000538489		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-3UTR	ENST00000367651	ENST00000489294		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-intron	ENST00000367651	ENST00000282169		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-intron	ENST00000537332	ENST00000545294		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-3UTR	ENST00000537332	ENST00000538489		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-3UTR	ENST00000537332	ENST00000489294		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-intron	ENST00000537332	ENST00000282169		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-intron	ENST00000536159	ENST00000545294		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-3UTR	ENST00000536159	ENST00000538489		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-3UTR	ENST00000536159	ENST00000489294		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-intron	ENST00000536159	ENST00000282169		ChiTaRS3.1			BG529263	CITED2	chr6	139695725	-	UHMK1	chr1	162498059	+
intron-5UTR	ENST00000341511	ENST00000380155		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000341511	ENST00000495743		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-5UTR	ENST00000265662	ENST00000380155		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000265662	ENST00000495743		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-5UTR	ENST00000371605	ENST00000380155		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000371605	ENST00000495743		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-5UTR	ENST00000492260	ENST00000380155		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000492260	ENST00000495743		ChiTaRS3.1			BI197024	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-3UTR	ENST00000452313	ENST00000309134		ChiTaRS3.1			AA152202	NPIPB7	chr16	28975467	-	TMEM9B	chr11	8969555	+
intron-3UTR	ENST00000452313	ENST00000534025		ChiTaRS3.1			AA152202	NPIPB7	chr16	28975467	-	TMEM9B	chr11	8969555	+
intron-3UTR	ENST00000452313	ENST00000525069		ChiTaRS3.1			AA152202	NPIPB7	chr16	28975467	-	TMEM9B	chr11	8969555	+
intron-intron	ENST00000452313	ENST00000528117		ChiTaRS3.1			AA152202	NPIPB7	chr16	28975467	-	TMEM9B	chr11	8969555	+
5CDS-intron	ENST00000341942	ENST00000334049		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
5CDS-intron	ENST00000341942	ENST00000535121		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
5CDS-intron	ENST00000341942	ENST00000269162		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
5CDS-intron	ENST00000341942	ENST00000423027		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
5CDS-intron	ENST00000341942	ENST00000590972		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
5CDS-intron	ENST00000341942	ENST00000602628		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000441173	ENST00000334049		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000441173	ENST00000535121		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000441173	ENST00000269162		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000441173	ENST00000423027		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000441173	ENST00000590972		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000441173	ENST00000602628		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000468582	ENST00000334049		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000468582	ENST00000535121		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000468582	ENST00000269162		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000468582	ENST00000423027		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000468582	ENST00000590972		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-intron	ENST00000468582	ENST00000602628		ChiTaRS3.1			BG178440	LAMTOR4	chr7	99751521	+	GNAL	chr18	11851756	+
3UTR-3CDS	ENST00000406644	ENST00000526180		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000533280		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000525823		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000533475		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000527950		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000227251		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000531198		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000406644	ENST00000533971		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-3CDS	ENST00000266304	ENST00000526180		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000533280		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000525823		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000533475		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000527950		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000227251		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000531198		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-intron	ENST00000266304	ENST00000533971		ChiTaRS3.1			BF727201	TEF	chr22	41794533	+	CRYAB	chr11	111782274	-
3UTR-3UTR	ENST00000447654	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000447654	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000447654	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000447654	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000401473	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000401473	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000401473	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000401473	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000311487	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000311487	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000311487	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000311487	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000347617	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000347617	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000347617	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000347617	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000395004	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000395004	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000395004	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000395004	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
intron-3UTR	ENST00000478214	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
intron-3UTR	ENST00000478214	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
intron-intron	ENST00000478214	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
intron-intron	ENST00000478214	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000374116	ENST00000404233		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-3UTR	ENST00000374116	ENST00000529972		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000374116	ENST00000525859		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
3UTR-intron	ENST00000374116	ENST00000543287		ChiTaRS3.1			EC495420	HMGA1	chr6	34213598	+	HYOU1	chr11	118914980	-
intron-intron	ENST00000375640	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000413405		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000414457		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000446807		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000423223		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000445521		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000455774		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000430295		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000608994		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000609413		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000537908		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000427063		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000438202		ChiTaRS3.1			CB998996	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
In-frame	ENST00000233143	ENST00000307961		ChiTaRS3.1			BU540332	TMSB10	chr2	85133222	+	RPL4	chr15	66791786	-
Frame-shit	ENST00000233143	ENST00000568588		ChiTaRS3.1			BU540332	TMSB10	chr2	85133222	+	RPL4	chr15	66791786	-
5CDS-intron	ENST00000233143	ENST00000564517		ChiTaRS3.1			BU540332	TMSB10	chr2	85133222	+	RPL4	chr15	66791786	-
intron-3UTR	ENST00000234590	ENST00000379170		ChiTaRS3.1			BM015435	ENO1	chr1	8926441	-	MCUR1	chr6	13788202	-
intron-intron	ENST00000234590	ENST00000359495		ChiTaRS3.1			BM015435	ENO1	chr1	8926441	-	MCUR1	chr6	13788202	-
5CDS-3UTR	ENST00000357575	ENST00000371743		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000357575	ENST00000450535		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000357575	ENST00000441722		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000357575	ENST00000417721		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000357575	ENST00000458653		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000357575	ENST00000326677		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000357575	ENST00000428008		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000371743		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000450535		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000441722		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000417721		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000458653		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000326677		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000397778	ENST00000428008		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000371743		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000450535		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000441722		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000417721		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000458653		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000326677		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000409073	ENST00000428008		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000371743		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000450535		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000441722		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000417721		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000458653		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000326677		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5CDS-3UTR	ENST00000590381	ENST00000428008		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000371743		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000450535		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000441722		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000417721		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000458653		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000326677		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
intron-3UTR	ENST00000590895	ENST00000428008		ChiTaRS3.1			AI763093	PQLC1	chr18	77703326	-	ZFAS1	chr20	47895637	+
5UTR-3CDS	ENST00000502271	ENST00000369162		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5UTR-intron	ENST00000502271	ENST00000522650		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5UTR-intron	ENST00000502271	ENST00000369143		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
In-frame	ENST00000504924	ENST00000369162		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5CDS-intron	ENST00000504924	ENST00000522650		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5CDS-intron	ENST00000504924	ENST00000369143		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5UTR-3CDS	ENST00000510591	ENST00000369162		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5UTR-intron	ENST00000510591	ENST00000522650		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5UTR-intron	ENST00000510591	ENST00000369143		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
In-frame	ENST00000507646	ENST00000369162		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5CDS-intron	ENST00000507646	ENST00000522650		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
5CDS-intron	ENST00000507646	ENST00000369143		ChiTaRS3.1			DA153697	ARL15	chr5	53409032	-	ASCC3	chr6	101054966	-
intron-3UTR	ENST00000304312	ENST00000534336		ChiTaRS3.1			DW431899	ATP5I	chr4	667099	-	MALAT1	chr11	65267017	+
intron-3UTR	ENST00000506525	ENST00000534336		ChiTaRS3.1			DW431899	ATP5I	chr4	667099	-	MALAT1	chr11	65267017	+
5UTR-intron	ENST00000311277	ENST00000324631		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000377328		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000352115		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000282343		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000377331		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000396576		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000377319		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000377329		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000377315		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000311277	ENST00000467034		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000324631		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000377328		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000352115		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000282343		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000377331		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000396576		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000377319		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000377329		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000377315		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000515654	ENST00000467034		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000324631		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000377328		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000352115		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000282343		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000377331		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000396576		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000377319		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000377329		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000377315		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
5UTR-intron	ENST00000379248	ENST00000467034		ChiTaRS3.1			DA505169	MAP9	chr4	156297921	-	CACNB2	chr10	18834460	-
intron-intron	ENST00000316534	ENST00000591972		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000316534	ENST00000589683		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000316534	ENST00000253796		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000316534	ENST00000587142		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000316534	ENST00000588576		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000445609	ENST00000591972		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000445609	ENST00000589683		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000445609	ENST00000253796		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000445609	ENST00000587142		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000445609	ENST00000588576		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000393272	ENST00000591972		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000393272	ENST00000589683		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000393272	ENST00000253796		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000393272	ENST00000587142		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000393272	ENST00000588576		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000355301	ENST00000591972		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000355301	ENST00000589683		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000355301	ENST00000253796		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000355301	ENST00000587142		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000355301	ENST00000588576		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000417665	ENST00000591972		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000417665	ENST00000589683		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000417665	ENST00000253796		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000417665	ENST00000587142		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000417665	ENST00000588576		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000418527	ENST00000591972		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000418527	ENST00000589683		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000418527	ENST00000253796		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000418527	ENST00000587142		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-intron	ENST00000418527	ENST00000588576		ChiTaRS3.1			AW206715	NPHP1	chr2	110922073	+	RAMP2	chr17	40915059	-
intron-3UTR	ENST00000390237	ENST00000261647		ChiTaRS3.1			BF512049	IGKC	chr2	89156747	+	TTC19	chr17	15931273	-
intron-3UTR	ENST00000390237	ENST00000486880		ChiTaRS3.1			BF512049	IGKC	chr2	89156747	+	TTC19	chr17	15931273	-
intron-intron	ENST00000390237	ENST00000497842		ChiTaRS3.1			BF512049	IGKC	chr2	89156747	+	TTC19	chr17	15931273	-
intron-intron	ENST00000321169	ENST00000381638		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000321169	ENST00000574474		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000435217	ENST00000381638		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000435217	ENST00000574474		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000451445	ENST00000381638		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000451445	ENST00000574474		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000456194	ENST00000381638		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000456194	ENST00000574474		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000457447	ENST00000381638		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000457447	ENST00000574474		ChiTaRS3.1			AI969337	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
5CDS-intron	ENST00000409731	ENST00000391945		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409731	ENST00000391944		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409731	ENST00000485403		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409731	ENST00000391940		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409731	ENST00000221481		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000345517	ENST00000391945		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000345517	ENST00000391944		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000345517	ENST00000485403		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000345517	ENST00000391940		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000345517	ENST00000221481		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
intron-intron	ENST00000409918	ENST00000391945		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
intron-intron	ENST00000409918	ENST00000391944		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
intron-intron	ENST00000409918	ENST00000485403		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
intron-intron	ENST00000409918	ENST00000391940		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
intron-intron	ENST00000409918	ENST00000221481		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409624	ENST00000391945		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409624	ENST00000391944		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409624	ENST00000485403		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409624	ENST00000391940		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
5CDS-intron	ENST00000409624	ENST00000221481		ChiTaRS3.1			AI682411	ACTG2	chr2	74146607	-	ERCC2	chr19	45861543	+
intron-3CDS	ENST00000491306	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000491306	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000491306	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000491306	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000491306	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000491306	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000600880	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000600880	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000600880	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000600880	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000600880	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000600880	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000446558	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000446558	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000446558	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000446558	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000446558	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000446558	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000456586	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000456586	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000456586	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000456586	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000456586	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000456586	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000598925	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000598925	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000598925	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000598925	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000598925	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000598925	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000427280	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000427280	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000427280	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000427280	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000427280	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000427280	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000441179	ENST00000534862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000441179	ENST00000538448		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000441179	ENST00000375862		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000441179	ENST00000520553		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000441179	ENST00000518730		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000441179	ENST00000375852		ChiTaRS3.1			CD365929	RPL37A	chr2	217366069	-	HCK	chr20	30671812	-
intron-3CDS	ENST00000398590	ENST00000543523		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000398590	ENST00000281172		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000398590	ENST00000543612		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000398590	ENST00000540613		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000398590	ENST00000542903		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000295900	ENST00000543523		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000295900	ENST00000281172		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000295900	ENST00000543612		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000295900	ENST00000540613		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000295900	ENST00000542903		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000487717	ENST00000543523		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000487717	ENST00000281172		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000487717	ENST00000543612		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000487717	ENST00000540613		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000487717	ENST00000542903		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000538065	ENST00000543523		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000538065	ENST00000281172		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000538065	ENST00000543612		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000538065	ENST00000540613		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000538065	ENST00000542903		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000484332	ENST00000543523		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000484332	ENST00000281172		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000484332	ENST00000543612		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000484332	ENST00000540613		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000484332	ENST00000542903		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000488239	ENST00000543523		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000488239	ENST00000281172		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000488239	ENST00000543612		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000488239	ENST00000540613		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-3CDS	ENST00000488239	ENST00000542903		ChiTaRS3.1			AI272316	ATXN7	chr3	63936969	+	EPS8	chr12	15793782	-
intron-intron	ENST00000350427	ENST00000474855		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000350427	ENST00000272519		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000350427	ENST00000420510		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000350427	ENST00000404963		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000350427	ENST00000470417		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000447342	ENST00000474855		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000447342	ENST00000272519		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000447342	ENST00000420510		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000447342	ENST00000404963		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000447342	ENST00000470417		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000431882	ENST00000474855		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000431882	ENST00000272519		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000431882	ENST00000420510		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000431882	ENST00000404963		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000431882	ENST00000470417		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000438029	ENST00000474855		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000438029	ENST00000272519		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-intron	ENST00000438029	ENST00000420510		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000438029	ENST00000404963		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
intron-3UTR	ENST00000438029	ENST00000470417		ChiTaRS3.1			AI190624	C7orf25	chr7	42956724	+	RALB	chr2	121052136	-
5UTR-3CDS	ENST00000368882	ENST00000454859		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000474289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000528402		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000454591		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000368291		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000309620		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000430841		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000368289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-3CDS	ENST00000368882	ENST00000531967		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5UTR-intron	ENST00000368882	ENST00000488087		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368885	ENST00000454859		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368885	ENST00000474289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368885	ENST00000528402		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368885	ENST00000454591		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368885	ENST00000368291		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368885	ENST00000309620		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368885	ENST00000430841		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368885	ENST00000368289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368885	ENST00000531967		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5CDS-intron	ENST00000368885	ENST00000488087		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000451850	ENST00000454859		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000451850	ENST00000474289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000451850	ENST00000528402		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000451850	ENST00000454591		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000451850	ENST00000368291		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000451850	ENST00000309620		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000451850	ENST00000430841		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000451850	ENST00000368289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000451850	ENST00000531967		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5CDS-intron	ENST00000451850	ENST00000488087		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368877	ENST00000454859		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368877	ENST00000474289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368877	ENST00000528402		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368877	ENST00000454591		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368877	ENST00000368291		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368877	ENST00000309620		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368877	ENST00000430841		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
Frame-shit	ENST00000368877	ENST00000368289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
In-frame	ENST00000368877	ENST00000531967		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
5CDS-intron	ENST00000368877	ENST00000488087		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000454859		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000474289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000528402		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000454591		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000368291		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000309620		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000430841		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000368289		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000368876	ENST00000531967		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-intron	ENST00000368876	ENST00000488087		ChiTaRS3.1			CN399561	AMD1	chr6	111196418	+	ECHDC1	chr6	127636043	-
intron-3CDS	ENST00000390548	ENST00000502463		ChiTaRS3.1			BC042052	IGHG1	chr14	106330795	-	CASC11	chr8	128746210	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			M19730	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			M19730	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000398512	ENST00000318560		ChiTaRS3.1			M19730	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			M19730	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
3UTR-5UTR	ENST00000265753	ENST00000511689		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-intron	ENST00000265753	ENST00000512507		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000265753	ENST00000304332		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000265753	ENST00000312469		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000265753	ENST00000423969		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000265753	ENST00000510038		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000353999	ENST00000511689		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-intron	ENST00000353999	ENST00000512507		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000353999	ENST00000304332		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000353999	ENST00000312469		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000353999	ENST00000423969		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
3UTR-5UTR	ENST00000353999	ENST00000510038		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
intron-5UTR	ENST00000495187	ENST00000511689		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
intron-intron	ENST00000495187	ENST00000512507		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
intron-5UTR	ENST00000495187	ENST00000304332		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
intron-5UTR	ENST00000495187	ENST00000312469		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
intron-5UTR	ENST00000495187	ENST00000423969		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
intron-5UTR	ENST00000495187	ENST00000510038		ChiTaRS3.1			BM479877	EIF4H	chr7	73609960	+	H2AFY	chr5	134724788	-
5CDS-5UTR	ENST00000560079	ENST00000373548		ChiTaRS3.1			BQ685262	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000373541		ChiTaRS3.1			BQ685262	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000490081		ChiTaRS3.1			BQ685262	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-5UTR	ENST00000299927	ENST00000373548		ChiTaRS3.1			BQ685262	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000373541		ChiTaRS3.1			BQ685262	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000490081		ChiTaRS3.1			BQ685262	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
intron-3UTR	ENST00000306442	ENST00000310924		ChiTaRS3.1			BC014480	PPIC	chr5	122359559	-	TBC1D16	chr17	77910725	-
intron-3UTR	ENST00000306442	ENST00000576768		ChiTaRS3.1			BC014480	PPIC	chr5	122359559	-	TBC1D16	chr17	77910725	-
intron-intron	ENST00000306442	ENST00000340848		ChiTaRS3.1			BC014480	PPIC	chr5	122359559	-	TBC1D16	chr17	77910725	-
intron-intron	ENST00000306442	ENST00000572862		ChiTaRS3.1			BC014480	PPIC	chr5	122359559	-	TBC1D16	chr17	77910725	-
intron-intron	ENST00000306442	ENST00000570373		ChiTaRS3.1			BC014480	PPIC	chr5	122359559	-	TBC1D16	chr17	77910725	-
3UTR-3UTR	ENST00000366639	ENST00000367658		ChiTaRS3.1			CD252017	TSNAX	chr1	231701200	+	HECA	chr6	139499988	+
intron-3UTR	ENST00000602825	ENST00000367658		ChiTaRS3.1			CD252017	TSNAX	chr1	231701200	+	HECA	chr6	139499988	+
5CDS-intron	ENST00000284425	ENST00000368301		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000361308		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000347559		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000368300		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000368299		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000448611		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000368297		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000473598		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000392353		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5CDS-intron	ENST00000284425	ENST00000496738		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000368301		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000361308		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000347559		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000368300		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000368299		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000448611		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000368297		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000473598		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000392353		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
5UTR-intron	ENST00000446604	ENST00000496738		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000368301		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000361308		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000347559		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000368300		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000368299		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000448611		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000368297		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000473598		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000392353		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000590645	ENST00000496738		ChiTaRS3.1			AX473890	ABCA6	chr17	67079014	-	LMNA	chr1	156056308	+
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW856573	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW856573	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW856573	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW856573	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-5UTR	ENST00000439211	ENST00000311604		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000439211	ENST00000381775		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000439211	ENST00000405957		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000439211	ENST00000406638		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000439211	ENST00000485341		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000439211	ENST00000599825		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-5UTR	ENST00000505337	ENST00000311604		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000505337	ENST00000381775		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000505337	ENST00000405957		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000505337	ENST00000406638		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000505337	ENST00000485341		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000505337	ENST00000599825		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-5UTR	ENST00000511032	ENST00000311604		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000511032	ENST00000381775		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000511032	ENST00000405957		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000511032	ENST00000406638		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000511032	ENST00000485341		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000511032	ENST00000599825		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-5UTR	ENST00000504396	ENST00000311604		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000504396	ENST00000381775		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000504396	ENST00000405957		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000504396	ENST00000406638		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000504396	ENST00000485341		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000504396	ENST00000599825		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-5UTR	ENST00000513048	ENST00000311604		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000513048	ENST00000381775		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000513048	ENST00000405957		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000513048	ENST00000406638		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000513048	ENST00000485341		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
intron-intron	ENST00000513048	ENST00000599825		ChiTaRS3.1			M33552	DHFR	chr5	79946335	-	LSP1	chr11	1874307	+
5CDS-intron	ENST00000321196	ENST00000370982		ChiTaRS3.1			DA271014	TMTC2	chr12	83081449	+	GNG12	chr1	68624933	-
5CDS-intron	ENST00000321196	ENST00000494936		ChiTaRS3.1			DA271014	TMTC2	chr12	83081449	+	GNG12	chr1	68624933	-
5CDS-intron	ENST00000548305	ENST00000370982		ChiTaRS3.1			DA271014	TMTC2	chr12	83081449	+	GNG12	chr1	68624933	-
5CDS-intron	ENST00000548305	ENST00000494936		ChiTaRS3.1			DA271014	TMTC2	chr12	83081449	+	GNG12	chr1	68624933	-
intron-intron	ENST00000549919	ENST00000370982		ChiTaRS3.1			DA271014	TMTC2	chr12	83081449	+	GNG12	chr1	68624933	-
intron-intron	ENST00000549919	ENST00000494936		ChiTaRS3.1			DA271014	TMTC2	chr12	83081449	+	GNG12	chr1	68624933	-
Frame-shit	ENST00000346169	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000378300		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000378292		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000329305		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000360958		ChiTaRS3.1			AW859459	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
intron-3CDS	ENST00000585937	ENST00000337018		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585937	ENST00000452918		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585937	ENST00000601879		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585937	ENST00000600377		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585937	ENST00000456085		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-intron	ENST00000585937	ENST00000598202		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000591899	ENST00000337018		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000591899	ENST00000452918		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000591899	ENST00000601879		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000591899	ENST00000600377		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000591899	ENST00000456085		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-intron	ENST00000591899	ENST00000598202		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000589880	ENST00000337018		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000589880	ENST00000452918		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000589880	ENST00000601879		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000589880	ENST00000600377		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000589880	ENST00000456085		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-intron	ENST00000589880	ENST00000598202		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000593029	ENST00000337018		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000593029	ENST00000452918		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000593029	ENST00000601879		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000593029	ENST00000600377		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000593029	ENST00000456085		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-intron	ENST00000593029	ENST00000598202		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585671	ENST00000337018		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585671	ENST00000452918		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585671	ENST00000601879		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585671	ENST00000600377		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-3CDS	ENST00000585671	ENST00000456085		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
intron-intron	ENST00000585671	ENST00000598202		ChiTaRS3.1			CF529612	UQCR11	chr19	1597392	+	SUGP2	chr19	19120797	+
5CDS-intron	ENST00000418458	ENST00000255882		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000418458	ENST00000572273		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000418458	ENST00000414196		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000418458	ENST00000466162		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000394799	ENST00000255882		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000394799	ENST00000572273		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000394799	ENST00000414196		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-intron	ENST00000394799	ENST00000466162		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
intron-intron	ENST00000460073	ENST00000255882		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
intron-intron	ENST00000460073	ENST00000572273		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
intron-intron	ENST00000460073	ENST00000414196		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
intron-intron	ENST00000460073	ENST00000466162		ChiTaRS3.1			AK297634	GNL3	chr3	52724720	+	PI4KA	chr22	21081820	-
5CDS-3UTR	ENST00000440884	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000440884	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-3UTR	ENST00000416682	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000416682	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-3UTR	ENST00000429436	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000429436	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-3UTR	ENST00000303622	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000303622	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-3UTR	ENST00000216288	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000216288	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-3UTR	ENST00000553942	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000553942	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-3UTR	ENST00000335102	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
5CDS-intron	ENST00000335102	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
intron-3UTR	ENST00000561071	ENST00000221086		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
intron-intron	ENST00000561071	ENST00000526292		ChiTaRS3.1			AI218823	MARK3	chr14	103969532	-	MTMR9	chr8	11180796	-
intron-3CDS	ENST00000311713	ENST00000358024		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000311713	ENST00000545499		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000311713	ENST00000495538		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000311713	ENST00000330675		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000311713	ENST00000329800		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000278856	ENST00000358024		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000278856	ENST00000545499		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000278856	ENST00000495538		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000278856	ENST00000330675		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000278856	ENST00000329800		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000529106	ENST00000358024		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000529106	ENST00000545499		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000529106	ENST00000495538		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000529106	ENST00000330675		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000529106	ENST00000329800		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000525239	ENST00000358024		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000525239	ENST00000545499		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000525239	ENST00000495538		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000525239	ENST00000330675		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000525239	ENST00000329800		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000525752	ENST00000358024		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000525752	ENST00000545499		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000525752	ENST00000495538		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000525752	ENST00000330675		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000525752	ENST00000329800		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000540620	ENST00000358024		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3CDS	ENST00000540620	ENST00000545499		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000540620	ENST00000495538		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000540620	ENST00000330675		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
intron-3UTR	ENST00000540620	ENST00000329800		ChiTaRS3.1			DA740744	WDR74	chr11	62609094	-	TMCC2	chr1	205238351	+
3UTR-3UTR	ENST00000262370	ENST00000280527		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-intron	ENST00000262370	ENST00000473403		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-3UTR	ENST00000415496	ENST00000280527		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-intron	ENST00000415496	ENST00000473403		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-3UTR	ENST00000399577	ENST00000280527		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-intron	ENST00000399577	ENST00000473403		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3UTR	ENST00000588994	ENST00000280527		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-intron	ENST00000588994	ENST00000473403		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3UTR	ENST00000586183	ENST00000280527		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-intron	ENST00000586183	ENST00000473403		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3UTR	ENST00000588015	ENST00000280527		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-intron	ENST00000588015	ENST00000473403		ChiTaRS3.1			AW294256	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3CDS	ENST00000345136	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000345136	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000345136	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000345136	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000357649	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000357649	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000357649	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000357649	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000354589	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000354589	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000354589	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000354589	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000398774	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000398774	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000398774	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000398774	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000322810	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000322810	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000322810	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000322810	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000354958	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000354958	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000354958	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000354958	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000356346	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000356346	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000356346	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000356346	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000436759	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000436759	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000436759	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000436759	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000527096	ENST00000344442		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000527096	ENST00000509061		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000527096	ENST00000324052		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-intron	ENST00000527096	ENST00000503898		ChiTaRS3.1			BQ002100	PLEC	chr8	144989526	+	LARP7	chr4	113571693	-
intron-3CDS	ENST00000268712	ENST00000335508		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000268712	ENST00000462613		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000268712	ENST00000409915		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000268712	ENST00000414963		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000268712	ENST00000487698		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-3CDS	ENST00000395851	ENST00000335508		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395851	ENST00000462613		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395851	ENST00000409915		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395851	ENST00000414963		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395851	ENST00000487698		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-3CDS	ENST00000395857	ENST00000335508		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395857	ENST00000462613		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395857	ENST00000409915		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395857	ENST00000414963		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395857	ENST00000487698		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-3CDS	ENST00000395848	ENST00000335508		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395848	ENST00000462613		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395848	ENST00000409915		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395848	ENST00000414963		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000395848	ENST00000487698		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-3CDS	ENST00000583226	ENST00000335508		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000583226	ENST00000462613		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000583226	ENST00000409915		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000583226	ENST00000414963		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
intron-intron	ENST00000583226	ENST00000487698		ChiTaRS3.1			BM836125	NCOR1	chr17	16029416	-	SF3B1	chr2	198264892	-
Frame-shit	ENST00000409236	ENST00000357702		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
Frame-shit	ENST00000409236	ENST00000259235		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
Frame-shit	ENST00000409236	ENST00000259234		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000356421	ENST00000357702		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000356421	ENST00000259235		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000356421	ENST00000259234		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000317233	ENST00000357702		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000317233	ENST00000259235		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000317233	ENST00000259234		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000409579	ENST00000357702		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000409579	ENST00000259235		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
In-frame	ENST00000409579	ENST00000259234		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
intron-3CDS	ENST00000483600	ENST00000357702		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
intron-3CDS	ENST00000483600	ENST00000259235		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
intron-3CDS	ENST00000483600	ENST00000259234		ChiTaRS3.1			DA775410	AFF3	chr2	100720862	-	SAP130	chr2	128770729	-
5CDS-5UTR	ENST00000495032	ENST00000325954		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
5CDS-intron	ENST00000495032	ENST00000413266		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
5CDS-intron	ENST00000495032	ENST00000542701		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-5UTR	ENST00000434063	ENST00000325954		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-intron	ENST00000434063	ENST00000413266		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-intron	ENST00000434063	ENST00000542701		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-5UTR	ENST00000429611	ENST00000325954		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-intron	ENST00000429611	ENST00000413266		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-intron	ENST00000429611	ENST00000542701		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-5UTR	ENST00000425358	ENST00000325954		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-intron	ENST00000425358	ENST00000413266		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
3UTR-intron	ENST00000425358	ENST00000542701		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
intron-5UTR	ENST00000428939	ENST00000325954		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
intron-intron	ENST00000428939	ENST00000413266		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
intron-intron	ENST00000428939	ENST00000542701		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
intron-5UTR	ENST00000593300	ENST00000325954		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
intron-intron	ENST00000593300	ENST00000413266		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
intron-intron	ENST00000593300	ENST00000542701		ChiTaRS3.1			DA759691	HOTAIRM1	chr7	27135949	+	RNF10	chr12	120972315	+
5CDS-5UTR	ENST00000352251	ENST00000288670		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
5CDS-intron	ENST00000352251	ENST00000475377		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
5CDS-intron	ENST00000352251	ENST00000497192		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-5UTR	ENST00000350125	ENST00000288670		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-intron	ENST00000350125	ENST00000475377		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-intron	ENST00000350125	ENST00000497192		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-5UTR	ENST00000484434	ENST00000288670		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-intron	ENST00000484434	ENST00000475377		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-intron	ENST00000484434	ENST00000497192		ChiTaRS3.1			CR746249	PROSER1	chr13	39608267	-	FMNL2	chr2	153192078	+
intron-intron	ENST00000219837	ENST00000438132		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000542263		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000417362		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000251143		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000543152		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000448695		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000544275		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000538853		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000438132		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000542263		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000417362		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000251143		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000543152		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000448695		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000544275		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000538853		ChiTaRS3.1			AW002855	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-3UTR	ENST00000307378	ENST00000312239		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000307378	ENST00000487117		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000307378	ENST00000375000		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000307378	ENST00000375003		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000537524	ENST00000312239		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000537524	ENST00000487117		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000537524	ENST00000375000		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000537524	ENST00000375003		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000473830	ENST00000312239		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000473830	ENST00000487117		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000473830	ENST00000375000		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000473830	ENST00000375003		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000452078	ENST00000312239		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000452078	ENST00000487117		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000452078	ENST00000375000		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000452078	ENST00000375003		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000458504	ENST00000312239		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000458504	ENST00000487117		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000458504	ENST00000375000		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000458504	ENST00000375003		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000390670	ENST00000312239		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000390670	ENST00000487117		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-intron	ENST00000390670	ENST00000375000		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
intron-3UTR	ENST00000390670	ENST00000375003		ChiTaRS3.1			BP387918	SLCO1A2	chr12	21531761	+	HP1BP3	chr1	21069918	-
In-frame	ENST00000415083	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000415083	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000542420	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
In-frame	ENST00000542420	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000542743	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000542743	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000539849	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
In-frame	ENST00000539849	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
In-frame	ENST00000269137	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000269137	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
In-frame	ENST00000545952	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
Frame-shit	ENST00000545952	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
intron-3CDS	ENST00000585241	ENST00000396928		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
intron-3CDS	ENST00000585241	ENST00000376884		ChiTaRS3.1			AF257501	SS18	chr18	23612362	-	SSX4B	chrX	48263000	-
5CDS-intron	ENST00000414242	ENST00000379251		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000414242	ENST00000379253		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000414242	ENST00000379254		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000414242	ENST00000379270		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-3UTR	ENST00000414242	ENST00000489394		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000361479	ENST00000379251		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000361479	ENST00000379253		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000361479	ENST00000379254		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-intron	ENST00000361479	ENST00000379270		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
5CDS-3UTR	ENST00000361479	ENST00000489394		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
intron-intron	ENST00000496525	ENST00000379251		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
intron-intron	ENST00000496525	ENST00000379253		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
intron-intron	ENST00000496525	ENST00000379254		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
intron-intron	ENST00000496525	ENST00000379270		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
intron-3UTR	ENST00000496525	ENST00000489394		ChiTaRS3.1			BM263653	MPHOSPH8	chr13	20224305	+	SAT1	chrX	23803938	+
intron-3UTR	ENST00000269187	ENST00000466801		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000269187	ENST00000409321		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000269187	ENST00000409115		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000269187	ENST00000341369		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000269187	ENST00000409683		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000269187	ENST00000410064		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000590986	ENST00000466801		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000590986	ENST00000409321		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000590986	ENST00000409115		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000590986	ENST00000341369		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000590986	ENST00000409683		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000590986	ENST00000410064		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000440549	ENST00000466801		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000440549	ENST00000409321		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000440549	ENST00000409115		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000440549	ENST00000341369		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000440549	ENST00000409683		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-3UTR	ENST00000440549	ENST00000410064		ChiTaRS3.1			BQ683405	SLC39A6	chr18	33689452	-	PTMA	chr2	232576658	+
intron-intron	ENST00000421182	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000421182	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000421182	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000421182	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357867	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357867	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357867	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357867	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000323926	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000323926	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000323926	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000323926	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000336916	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000336916	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000336916	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000336916	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000354785	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000354785	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000354785	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000354785	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357009	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357009	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357009	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000357009	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000346544	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000346544	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000346544	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000346544	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000345488	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000345488	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000345488	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000345488	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000359671	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000359671	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000359671	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000359671	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000446046	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000446046	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000446046	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000446046	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000443816	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000443816	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000443816	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000443816	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000432072	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000432072	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000432072	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000432072	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000356005	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000356005	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000356005	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000356005	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000490833	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000490833	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000490833	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000490833	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000426059	ENST00000345366		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000426059	ENST00000336844		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000426059	ENST00000392886		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
intron-intron	ENST00000426059	ENST00000560142		ChiTaRS3.1			AA368559	FN1	chr2	216241265	-	CSH2	chr17	61950279	-
5UTR-5UTR	ENST00000297161	ENST00000398204		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
5UTR-5UTR	ENST00000297161	ENST00000439864		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
5UTR-5UTR	ENST00000297161	ENST00000398201		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
5UTR-5UTR	ENST00000297161	ENST00000265727		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
5UTR-5UTR	ENST00000297161	ENST00000315984		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
5UTR-intron	ENST00000297161	ENST00000398209		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
5UTR-intron	ENST00000297161	ENST00000476330		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000426693	ENST00000398204		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000426693	ENST00000439864		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000426693	ENST00000398201		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000426693	ENST00000265727		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000426693	ENST00000315984		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-intron	ENST00000426693	ENST00000398209		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-intron	ENST00000426693	ENST00000476330		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000494786	ENST00000398204		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000494786	ENST00000439864		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000494786	ENST00000398201		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000494786	ENST00000265727		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000494786	ENST00000315984		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-intron	ENST00000494786	ENST00000398209		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-intron	ENST00000494786	ENST00000476330		ChiTaRS3.1			AB009671	BMPER	chr7	33944715	+	ADAM22	chr7	87563702	+
intron-5UTR	ENST00000545187	ENST00000345366		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000545187	ENST00000336844		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000545187	ENST00000392886		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000545187	ENST00000560142		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000338128	ENST00000345366		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000338128	ENST00000336844		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000338128	ENST00000392886		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000338128	ENST00000560142		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000457269	ENST00000345366		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000457269	ENST00000336844		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000457269	ENST00000392886		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000457269	ENST00000560142		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000578963	ENST00000345366		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000578963	ENST00000336844		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000578963	ENST00000392886		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000578963	ENST00000560142		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000317018	ENST00000345366		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000317018	ENST00000336844		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000317018	ENST00000392886		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-5UTR	ENST00000317018	ENST00000560142		ChiTaRS3.1			AA368753	ISYNA1	chr19	18547190	-	CSH2	chr17	61951036	-
intron-3CDS	ENST00000230538	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000230538	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000522006	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000522006	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000389463	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000389463	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000424408	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000424408	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000524032	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000524032	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000431543	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000431543	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000368638	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000368638	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000453937	ENST00000542955		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
intron-3CDS	ENST00000453937	ENST00000269593		ChiTaRS3.1			CO245280	LAMA4	chr6	112508683	-	IGFBP4	chr17	38609305	+
Frame-shit	ENST00000367142	ENST00000407597		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
Frame-shit	ENST00000367142	ENST00000424279		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
Frame-shit	ENST00000367142	ENST00000536365		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
Frame-shit	ENST00000367142	ENST00000380961		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
Frame-shit	ENST00000367142	ENST00000217964		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
5CDS-intron	ENST00000367142	ENST00000497555		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
intron-3CDS	ENST00000464938	ENST00000407597		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
intron-3CDS	ENST00000464938	ENST00000424279		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
intron-3CDS	ENST00000464938	ENST00000536365		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
intron-3CDS	ENST00000464938	ENST00000380961		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
intron-3CDS	ENST00000464938	ENST00000217964		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
intron-intron	ENST00000464938	ENST00000497555		ChiTaRS3.1			DA634796	NUCKS1	chr1	205719083	-	TBL1X	chrX	9652080	+
Frame-shit	ENST00000588750	ENST00000389658		ChiTaRS3.1			DA183106	APOC1	chr19	45419584	+	LAMA1	chr18	7042250	-
Frame-shit	ENST00000588802	ENST00000389658		ChiTaRS3.1			DA183106	APOC1	chr19	45419584	+	LAMA1	chr18	7042250	-
Frame-shit	ENST00000252491	ENST00000389658		ChiTaRS3.1			DA183106	APOC1	chr19	45419584	+	LAMA1	chr18	7042250	-
In-frame	ENST00000592885	ENST00000389658		ChiTaRS3.1			DA183106	APOC1	chr19	45419584	+	LAMA1	chr18	7042250	-
intron-3CDS	ENST00000589781	ENST00000389658		ChiTaRS3.1			DA183106	APOC1	chr19	45419584	+	LAMA1	chr18	7042250	-
In-frame	ENST00000586638	ENST00000389658		ChiTaRS3.1			DA183106	APOC1	chr19	45419584	+	LAMA1	chr18	7042250	-
3UTR-3CDS	ENST00000534336	ENST00000216281		ChiTaRS3.1			D87666	MALAT1	chr11	65267197	+	HSP90AA1	chr14	102549512	-
3UTR-3CDS	ENST00000534336	ENST00000334701		ChiTaRS3.1			D87666	MALAT1	chr11	65267197	+	HSP90AA1	chr14	102549512	-
3UTR-3CDS	ENST00000534336	ENST00000441629		ChiTaRS3.1			D87666	MALAT1	chr11	65267197	+	HSP90AA1	chr14	102549512	-
3UTR-intron	ENST00000534336	ENST00000558600		ChiTaRS3.1			D87666	MALAT1	chr11	65267197	+	HSP90AA1	chr14	102549512	-
intron-intron	ENST00000309311	ENST00000599957		ChiTaRS3.1			AW499012	EEF2	chr19	3982298	-	LRRC4B	chr19	51037650	-
intron-intron	ENST00000309311	ENST00000389201		ChiTaRS3.1			AW499012	EEF2	chr19	3982298	-	LRRC4B	chr19	51037650	-
intron-intron	ENST00000600720	ENST00000599957		ChiTaRS3.1			AW499012	EEF2	chr19	3982298	-	LRRC4B	chr19	51037650	-
intron-intron	ENST00000600720	ENST00000389201		ChiTaRS3.1			AW499012	EEF2	chr19	3982298	-	LRRC4B	chr19	51037650	-
intron-3UTR	ENST00000413644	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000413644	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000368961	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000368961	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000310786	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000310786	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000275080	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000275080	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000324953	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000324953	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000512821	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000512821	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000504373	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000504373	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-3UTR	ENST00000506649	ENST00000409185		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000506649	ENST00000389915		ChiTaRS3.1			DA568574	CD164	chr6	109689505	-	FAM168B	chr2	131807365	-
intron-intron	ENST00000392975	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392975	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392975	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000360793	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000360793	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000360793	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000584031	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000584031	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000584031	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392976	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392976	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392976	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582297	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582297	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582297	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581573	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581573	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581573	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000448884	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000448884	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000448884	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582034	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582034	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582034	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000542042	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000542042	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000542042	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581163	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581163	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581163	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582997	ENST00000275605		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582997	ENST00000395471		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582997	ENST00000459834		ChiTaRS3.1			BI199927	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
3UTR-intron	ENST00000253039	ENST00000392524		ChiTaRS3.1			AI830759	EIF2S3	chrX	24095226	+	HNRNPA3	chr2	178087487	+
3UTR-3UTR	ENST00000253039	ENST00000411529		ChiTaRS3.1			AI830759	EIF2S3	chrX	24095226	+	HNRNPA3	chr2	178087487	+
3UTR-intron	ENST00000253039	ENST00000435711		ChiTaRS3.1			AI830759	EIF2S3	chrX	24095226	+	HNRNPA3	chr2	178087487	+
intron-intron	ENST00000460032	ENST00000392524		ChiTaRS3.1			AI830759	EIF2S3	chrX	24095226	+	HNRNPA3	chr2	178087487	+
intron-3UTR	ENST00000460032	ENST00000411529		ChiTaRS3.1			AI830759	EIF2S3	chrX	24095226	+	HNRNPA3	chr2	178087487	+
intron-intron	ENST00000460032	ENST00000435711		ChiTaRS3.1			AI830759	EIF2S3	chrX	24095226	+	HNRNPA3	chr2	178087487	+
5UTR-5UTR	ENST00000269214	ENST00000322247		ChiTaRS3.1			BC022410	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000269214	ENST00000402563		ChiTaRS3.1			BC022410	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000269214	ENST00000588475		ChiTaRS3.1			BC022410	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000580101	ENST00000322247		ChiTaRS3.1			BC022410	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000580101	ENST00000402563		ChiTaRS3.1			BC022410	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000580101	ENST00000588475		ChiTaRS3.1			BC022410	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
intron-intron	ENST00000367255	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367255	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367255	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000356820	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000356820	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000356820	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000423061	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000423061	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000423061	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000448038	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000448038	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000448038	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000341594	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000341594	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000341594	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000265368	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000265368	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000265368	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367253	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367253	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367253	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367248	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367248	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000367248	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000413186	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000413186	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000413186	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000466159	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000466159	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000466159	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000539504	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000539504	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000539504	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000347037	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000347037	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000347037	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000354674	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000354674	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000354674	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000495090	ENST00000254908		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000495090	ENST00000512783		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
intron-intron	ENST00000495090	ENST00000510013		ChiTaRS3.1			AK056122	SYNE1	chr6	152680463	-	PCBD2	chr5	134260108	-
5CDS-3UTR	ENST00000248958	ENST00000389039		ChiTaRS3.1			AA533569	SDF2L1	chr22	21998410	-	DUOX2	chr15	45385646	+
5CDS-3UTR	ENST00000248958	ENST00000603300		ChiTaRS3.1			AA533569	SDF2L1	chr22	21998410	-	DUOX2	chr15	45385646	+
intron-intron	ENST00000339600	ENST00000362507		ChiTaRS3.1			AU133746	NDUFA4	chr7	10973246	-	RNU5F-1	chr1	220193419	-
intron-intron	ENST00000492822	ENST00000362507		ChiTaRS3.1			AU133746	NDUFA4	chr7	10973246	-	RNU5F-1	chr1	220193419	-
intron-intron	ENST00000369219	ENST00000604938		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000401010		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000339388		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000369323		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000605317		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000479926		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000604894		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000369219	ENST00000401009		ChiTaRS3.1			U51694	NBPF14	chr1	144952200	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000409198	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000409198	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000409198	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000409198	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397345	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397345	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397345	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397345	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000427231	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000427231	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000427231	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000427231	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000172853	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000172853	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000172853	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000172853	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000604864	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000604864	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000604864	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000604864	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000603639	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000603639	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000603639	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000603639	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397336	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397336	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397336	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000397336	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000509223	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000509223	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000509223	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000509223	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000498015	ENST00000332512		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000498015	ENST00000352483		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000498015	ENST00000542057		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-intron	ENST00000498015	ENST00000544709		ChiTaRS3.1			BE717731	NEB	chr2	152468732	-	RIPK4	chr21	43166181	-
intron-5UTR	ENST00000448526	ENST00000229239		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000448526	ENST00000396856		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000448526	ENST00000396861		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-intron	ENST00000448526	ENST00000396859		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-intron	ENST00000448526	ENST00000396858		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-5UTR	ENST00000244741	ENST00000229239		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-5UTR	ENST00000244741	ENST00000396856		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-5UTR	ENST00000244741	ENST00000396861		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-intron	ENST00000244741	ENST00000396859		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-intron	ENST00000244741	ENST00000396858		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-5UTR	ENST00000405375	ENST00000229239		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-5UTR	ENST00000405375	ENST00000396856		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-5UTR	ENST00000405375	ENST00000396861		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-intron	ENST00000405375	ENST00000396859		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
3UTR-intron	ENST00000405375	ENST00000396858		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000373711	ENST00000229239		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000373711	ENST00000396856		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000373711	ENST00000396861		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-intron	ENST00000373711	ENST00000396859		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-intron	ENST00000373711	ENST00000396858		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000478800	ENST00000229239		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000478800	ENST00000396856		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-5UTR	ENST00000478800	ENST00000396861		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-intron	ENST00000478800	ENST00000396859		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
intron-intron	ENST00000478800	ENST00000396858		ChiTaRS3.1			BI117444	CDKN1A	chr6	36654550	+	GAPDH	chr12	6643705	+
In-frame	ENST00000250151	ENST00000380490		ChiTaRS3.1			CA310224	CCL4	chr17	34431316	-	ALOX5AP	chr13	31330136	-
5CDS-intron	ENST00000250151	ENST00000479597		ChiTaRS3.1			CA310224	CCL4	chr17	34431316	-	ALOX5AP	chr13	31330136	-
In-frame	ENST00000394495	ENST00000380490		ChiTaRS3.1			CA310224	CCL4	chr17	34431316	-	ALOX5AP	chr13	31330136	-
5CDS-intron	ENST00000394495	ENST00000479597		ChiTaRS3.1			CA310224	CCL4	chr17	34431316	-	ALOX5AP	chr13	31330136	-
intron-3CDS	ENST00000419197	ENST00000237937		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000419197	ENST00000488164		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000419197	ENST00000376962		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000419197	ENST00000376960		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000419197	ENST00000343431		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-3CDS	ENST00000526888	ENST00000237937		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000526888	ENST00000488164		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000526888	ENST00000376962		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000526888	ENST00000376960		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000526888	ENST00000343431		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
3UTR-3CDS	ENST00000527958	ENST00000237937		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
3UTR-5UTR	ENST00000527958	ENST00000488164		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
3UTR-5UTR	ENST00000527958	ENST00000376962		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
3UTR-5UTR	ENST00000527958	ENST00000376960		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
3UTR-5UTR	ENST00000527958	ENST00000343431		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-3CDS	ENST00000529887	ENST00000237937		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000529887	ENST00000488164		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000529887	ENST00000376962		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000529887	ENST00000376960		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000529887	ENST00000343431		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-3CDS	ENST00000530272	ENST00000237937		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000530272	ENST00000488164		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000530272	ENST00000376962		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000530272	ENST00000376960		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000530272	ENST00000343431		ChiTaRS3.1			CB528508	PAFAH1B2	chr11	117040748	-	ZFAND5	chr9	74974361	+
intron-5UTR	ENST00000330722	ENST00000262325		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
intron-5UTR	ENST00000330722	ENST00000592545		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
intron-5UTR	ENST00000330722	ENST00000538556		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
intron-5UTR	ENST00000330722	ENST00000312678		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
intron-intron	ENST00000330722	ENST00000589344		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
intron-intron	ENST00000330722	ENST00000537622		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
intron-intron	ENST00000330722	ENST00000545922		ChiTaRS3.1			DC348251	KRT6A	chr12	52886811	-	AP2B1	chr17	33914354	+
3UTR-3CDS	ENST00000264639	ENST00000319622		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000565184		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000389093		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000335181		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000568883		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000449901		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000565154		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
3UTR-3CDS	ENST00000264639	ENST00000568459		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000319622		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000565184		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000389093		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000335181		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000568883		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000449901		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000565154		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000541736	ENST00000568459		ChiTaRS3.1			BQ183886	PSMD3	chr17	38154073	-	PKM	chr15	72492925	+
intron-3CDS	ENST00000563392	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000563392	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000563392	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000570055	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000570055	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000570055	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000563206	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000563206	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000563206	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000451014	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000451014	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000451014	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000568625	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000568625	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000568625	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000288071	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000288071	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5CDS-3UTR	ENST00000288071	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5UTR-3CDS	ENST00000393657	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5UTR-3CDS	ENST00000393657	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5UTR-3UTR	ENST00000393657	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000355992	ENST00000348943		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000355992	ENST00000325495		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5CDS-3UTR	ENST00000355992	ENST00000602219		ChiTaRS3.1			BU535721	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5CDS-3UTR	ENST00000429277	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000429277	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000429277	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000429277	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000429277	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000429277	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000429277	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000429277	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000429277	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000429277	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000352360	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000352360	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000352360	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000352360	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000352360	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000352360	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000352360	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000352360	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000352360	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000352360	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000458213	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000458213	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000458213	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000458213	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000458213	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000458213	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000458213	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000458213	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000458213	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000458213	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000263066	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000263066	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000263066	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000263066	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000263066	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000263066	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000263066	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000263066	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000263066	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000263066	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000361373	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000361373	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000361373	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000361373	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000361373	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000361373	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000361373	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000361373	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000361373	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000361373	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372066	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372066	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372066	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372066	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372066	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372066	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372066	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372066	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372066	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372066	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372056	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372056	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372056	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372056	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372056	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372056	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372056	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372056	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000372056	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000372056	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000310944	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000310944	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000310944	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000310944	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000310944	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000310944	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000310944	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000310944	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-intron	ENST00000310944	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
5CDS-3UTR	ENST00000310944	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-3UTR	ENST00000542786	ENST00000266458		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-intron	ENST00000542786	ENST00000421801		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-3UTR	ENST00000542786	ENST00000544284		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-intron	ENST00000542786	ENST00000545047		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-intron	ENST00000542786	ENST00000543602		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-3UTR	ENST00000542786	ENST00000545887		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-intron	ENST00000542786	ENST00000539289		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-3UTR	ENST00000542786	ENST00000546017		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-intron	ENST00000542786	ENST00000535576		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-3UTR	ENST00000542786	ENST00000539170		ChiTaRS3.1			DA892797	LDB3	chr10	88428449	+	GABARAPL1	chr12	10374464	+
intron-5UTR	ENST00000269187	ENST00000418115		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-intron	ENST00000269187	ENST00000454011		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-intron	ENST00000269187	ENST00000422781		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-5UTR	ENST00000269187	ENST00000265538		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-5UTR	ENST00000590986	ENST00000418115		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-intron	ENST00000590986	ENST00000454011		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-intron	ENST00000590986	ENST00000422781		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-5UTR	ENST00000590986	ENST00000265538		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-5UTR	ENST00000440549	ENST00000418115		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-intron	ENST00000440549	ENST00000454011		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-intron	ENST00000440549	ENST00000422781		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-5UTR	ENST00000440549	ENST00000265538		ChiTaRS3.1			AU141201	SLC39A6	chr18	33689030	-	RHOA	chr3	49449401	-
intron-3UTR	ENST00000481781	ENST00000375068		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000481781	ENST00000375053		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000481781	ENST00000347546		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000481781	ENST00000375062		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000481781	ENST00000218439		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000481781	ENST00000375058		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000481781	ENST00000375060		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000481781	ENST00000396224		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000481781	ENST00000497484		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000397270	ENST00000375068		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000397270	ENST00000375053		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000397270	ENST00000347546		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000397270	ENST00000375062		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000397270	ENST00000218439		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000397270	ENST00000375058		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-3UTR	ENST00000397270	ENST00000375060		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000397270	ENST00000396224		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
intron-intron	ENST00000397270	ENST00000497484		ChiTaRS3.1			W04212	INS-IGF2	chr11	2153214	-	MAGED2	chrX	54842376	+
3UTR-3UTR	ENST00000274747	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-3UTR	ENST00000274747	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-3UTR	ENST00000274747	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-intron	ENST00000274747	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000543597	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000543597	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000543597	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-intron	ENST00000543597	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000535061	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000535061	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000535061	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-intron	ENST00000535061	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000483634	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000483634	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000483634	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-intron	ENST00000483634	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000378353	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000378353	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000378353	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-intron	ENST00000378353	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-3UTR	ENST00000378386	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-3UTR	ENST00000378386	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-3UTR	ENST00000378386	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-intron	ENST00000378386	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000443868	ENST00000412036		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000443868	ENST00000285106		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-3UTR	ENST00000443868	ENST00000589940		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
intron-intron	ENST00000443868	ENST00000587396		ChiTaRS3.1			BM750243	MRS2	chr6	24425083	+	CXXC1	chr18	47808778	-
3UTR-3CDS	ENST00000331595	ENST00000322723		ChiTaRS3.1			BU617112	BGN	chrX	152774480	-	NCL	chr2	232321418	+
3UTR-3CDS	ENST00000480756	ENST00000322723		ChiTaRS3.1			BU617112	BGN	chrX	152774480	-	NCL	chr2	232321418	+
3UTR-3CDS	ENST00000438290	ENST00000279263		ChiTaRS3.1			DR761293	SOX21-AS1	chr13	95365044	+	TM7SF2	chr11	64879495	+
3UTR-5UTR	ENST00000438290	ENST00000540748		ChiTaRS3.1			DR761293	SOX21-AS1	chr13	95365044	+	TM7SF2	chr11	64879495	+
3UTR-5UTR	ENST00000438290	ENST00000345348		ChiTaRS3.1			DR761293	SOX21-AS1	chr13	95365044	+	TM7SF2	chr11	64879495	+
3UTR-intron	ENST00000438290	ENST00000531029		ChiTaRS3.1			DR761293	SOX21-AS1	chr13	95365044	+	TM7SF2	chr11	64879495	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM491360	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM491360	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM491360	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM491360	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000358716	ENST00000376460		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000358716	ENST00000339416		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000358716	ENST00000448493		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000358716	ENST00000442173		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000358716	ENST00000461998		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000382422	ENST00000376460		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000382422	ENST00000339416		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000382422	ENST00000448493		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000382422	ENST00000442173		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000382422	ENST00000461998		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000360310	ENST00000376460		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000360310	ENST00000339416		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000360310	ENST00000448493		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000360310	ENST00000442173		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000360310	ENST00000461998		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000553853	ENST00000376460		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000553853	ENST00000339416		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-3CDS	ENST00000553853	ENST00000448493		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000553853	ENST00000442173		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
intron-intron	ENST00000553853	ENST00000461998		ChiTaRS3.1			AW380042	BAZ1A	chr14	35279442	-	DOCK9	chr13	99502334	-
3UTR-5UTR	ENST00000380060	ENST00000550697		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000548580		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000293422		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000348108		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000549017		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000549566		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000536128		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000547649		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000547408		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000380060	ENST00000551589		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-intron	ENST00000380060	ENST00000548400		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-intron	ENST00000380060	ENST00000548293		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-intron	ENST00000380060	ENST00000551954		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000550697		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000548580		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000293422		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000348108		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000549017		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000549566		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000536128		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000547649		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000547408		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-5UTR	ENST00000398097	ENST00000551589		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-intron	ENST00000398097	ENST00000548400		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-intron	ENST00000398097	ENST00000548293		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
3UTR-intron	ENST00000398097	ENST00000551954		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000550697		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000548580		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000293422		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000348108		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000549017		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000549566		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000536128		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000547649		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000547408		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-5UTR	ENST00000485305	ENST00000551589		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-intron	ENST00000485305	ENST00000548400		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-intron	ENST00000485305	ENST00000548293		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-intron	ENST00000485305	ENST00000551954		ChiTaRS3.1			AK026164	NHS	chrX	17750797	+	MYL6	chr12	56552146	+
intron-3CDS	ENST00000382582	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000382582	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000355994	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000355994	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397875	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397875	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397866	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397866	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397865	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397865	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000527041	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000527041	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000359645	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000359645	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000528160	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000528160	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397869	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397869	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000354542	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000354542	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000526111	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000526111	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000580402	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000580402	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000579129	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000579129	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000578193	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000578193	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397863	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397863	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397860	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000397860	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000487778	ENST00000447399		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-3CDS	ENST00000487778	ENST00000318950		ChiTaRS3.1			CA436904	MBP	chr18	74725036	+	SWAP70	chr11	9769533	-
intron-intron	ENST00000255631	ENST00000534307		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000528302		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000322535		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000534307		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000528302		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000322535		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000534307		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000528302		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000322535		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000534307		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000528302		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000322535		ChiTaRS3.1			BU191520	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
Frame-shit	ENST00000368357	ENST00000529410		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000533560		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000361794		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000368139		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000526019		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000368136		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000529410		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000533560		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000361794		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000368139		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000526019		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000368136		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000529410		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000533560		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000361794		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000368139		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000526019		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000368136		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000529410		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000533560		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000361794		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000368139		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000526019		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000368136		ChiTaRS3.1			AX747709	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5CDS-intron	ENST00000229239	ENST00000540235		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393930		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393931		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000310706		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000540235		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393930		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393931		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000310706		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000540235		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393930		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393931		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000310706		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000540235		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393930		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393931		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000310706		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000540235		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393930		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393931		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000310706		ChiTaRS3.1			BQ314752	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5UTR-5UTR	ENST00000333206	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000333206	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000420878	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000420878	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000589178	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000589178	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000383091	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000383091	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000601405	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000601405	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000592278	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000592278	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000588832	ENST00000378609		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000588832	ENST00000472614		ChiTaRS3.1			BF307939	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
Frame-shit	ENST00000324106	ENST00000550347		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
Frame-shit	ENST00000324106	ENST00000420613		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-5UTR	ENST00000324106	ENST00000548701		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-5UTR	ENST00000324106	ENST00000553086		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-intron	ENST00000324106	ENST00000357861		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
Frame-shit	ENST00000374481	ENST00000550347		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
Frame-shit	ENST00000374481	ENST00000420613		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-5UTR	ENST00000374481	ENST00000548701		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-5UTR	ENST00000374481	ENST00000553086		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-intron	ENST00000374481	ENST00000357861		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
intron-3CDS	ENST00000458610	ENST00000550347		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
intron-3CDS	ENST00000458610	ENST00000420613		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
intron-5UTR	ENST00000458610	ENST00000548701		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
intron-5UTR	ENST00000458610	ENST00000553086		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
intron-intron	ENST00000458610	ENST00000357861		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
Frame-shit	ENST00000374478	ENST00000550347		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
Frame-shit	ENST00000374478	ENST00000420613		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-5UTR	ENST00000374478	ENST00000548701		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-5UTR	ENST00000374478	ENST00000553086		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
5CDS-intron	ENST00000374478	ENST00000357861		ChiTaRS3.1			CR989260	CD28	chr2	204571472	+	KANSL2	chr12	49048845	-
intron-intron	ENST00000280606	ENST00000567020		ChiTaRS3.1			CA309365	PRSS53	chr16	31102648	+	TBC1D24	chr16	2569560	-
intron-intron	ENST00000280606	ENST00000293970		ChiTaRS3.1			CA309365	PRSS53	chr16	31102648	+	TBC1D24	chr16	2569560	-
intron-intron	ENST00000280606	ENST00000434757		ChiTaRS3.1			CA309365	PRSS53	chr16	31102648	+	TBC1D24	chr16	2569560	-
Frame-shit	ENST00000418929	ENST00000252891		ChiTaRS3.1			BG470493	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-intron	ENST00000418929	ENST00000598779		ChiTaRS3.1			BG470493	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-intron	ENST00000418929	ENST00000540131		ChiTaRS3.1			BG470493	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-5UTR	ENST00000418929	ENST00000599594		ChiTaRS3.1			BG470493	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
intron-3UTR	ENST00000546088	ENST00000410096		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-3UTR	ENST00000546088	ENST00000397283		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000546088	ENST00000535935		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000546088	ENST00000420719		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000546088	ENST00000409216		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000546088	ENST00000409925		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-3UTR	ENST00000448108	ENST00000410096		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-3UTR	ENST00000448108	ENST00000397283		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000448108	ENST00000535935		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000448108	ENST00000420719		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000448108	ENST00000409216		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-intron	ENST00000448108	ENST00000409925		ChiTaRS3.1			DA340713	TAF1D	chr11	93464672	-	ERMN	chr2	158177168	-
intron-3CDS	ENST00000369026	ENST00000389266		ChiTaRS3.1			AI991710	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000464132	ENST00000389266		ChiTaRS3.1			AI991710	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000307940	ENST00000389266		ChiTaRS3.1			AI991710	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3UTR	ENST00000346798	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000346798	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000346798	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000346798	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000346798	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000354192	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000354192	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000354192	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000354192	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000354192	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000348990	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000348990	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000348990	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000348990	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000348990	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000357903	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000357903	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000357903	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000357903	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000357903	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000358918	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000358918	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000358918	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000358918	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000358918	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000359726	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000359726	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000359726	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000359726	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000359726	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000448388	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000448388	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000448388	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000448388	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000448388	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000440126	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000440126	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000440126	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000440126	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000440126	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000439274	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000439274	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000439274	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000439274	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000439274	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000474136	ENST00000287263		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000474136	ENST00000330843		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000474136	ENST00000522727		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000474136	ENST00000523182		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000474136	ENST00000524118		ChiTaRS3.1			AK074469	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-5UTR	ENST00000384994	ENST00000382582		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000355994		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000397875		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000397866		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000397865		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000527041		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-intron	ENST00000384994	ENST00000359645		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-intron	ENST00000384994	ENST00000528160		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-intron	ENST00000384994	ENST00000397869		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000354542		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000526111		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000580402		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000579129		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000578193		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000397863		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000397860		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
intron-5UTR	ENST00000384994	ENST00000487778		ChiTaRS3.1			DB167927	NEAT1	chr11	65206894	+	MBP	chr18	74729016	-
5CDS-5UTR	ENST00000304636	ENST00000304758		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-5UTR	ENST00000304636	ENST00000524145		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000304636	ENST00000462114		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000304636	ENST00000371959		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000304636	ENST00000371962		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000304636	ENST00000371958		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-5UTR	ENST00000317840	ENST00000304758		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-5UTR	ENST00000317840	ENST00000524145		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000317840	ENST00000462114		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000317840	ENST00000371959		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000317840	ENST00000371962		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
5CDS-intron	ENST00000317840	ENST00000371958		ChiTaRS3.1			AL599526	COL3A1	chr2	189839269	+	AMOT	chrX	112058970	-
3UTR-3UTR	ENST00000300952	ENST00000300952		ChiTaRS3.1			AA641890	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000300952	ENST00000591446		ChiTaRS3.1			AA641890	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000591446	ENST00000300952		ChiTaRS3.1			AA641890	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000591446	ENST00000591446		ChiTaRS3.1			AA641890	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
Frame-shit	ENST00000312932	ENST00000338380		ChiTaRS3.1			R49911	SEC14L2	chr22	30812008	+	SLPI	chr20	43882276	-
Frame-shit	ENST00000403484	ENST00000338380		ChiTaRS3.1			R49911	SEC14L2	chr22	30812008	+	SLPI	chr20	43882276	-
Frame-shit	ENST00000405717	ENST00000338380		ChiTaRS3.1			R49911	SEC14L2	chr22	30812008	+	SLPI	chr20	43882276	-
Frame-shit	ENST00000402592	ENST00000338380		ChiTaRS3.1			R49911	SEC14L2	chr22	30812008	+	SLPI	chr20	43882276	-
intron-3CDS	ENST00000459728	ENST00000338380		ChiTaRS3.1			R49911	SEC14L2	chr22	30812008	+	SLPI	chr20	43882276	-
3UTR-3UTR	ENST00000558401	ENST00000340308		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-3UTR	ENST00000558401	ENST00000447932		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-3UTR	ENST00000558401	ENST00000326232		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-intron	ENST00000558401	ENST00000429996		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-intron	ENST00000558401	ENST00000461089		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3UTR	ENST00000559916	ENST00000340308		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3UTR	ENST00000559916	ENST00000447932		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3UTR	ENST00000559916	ENST00000326232		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-intron	ENST00000559916	ENST00000429996		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-intron	ENST00000559916	ENST00000461089		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3UTR	ENST00000544417	ENST00000340308		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3UTR	ENST00000544417	ENST00000447932		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3UTR	ENST00000544417	ENST00000326232		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-intron	ENST00000544417	ENST00000429996		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-intron	ENST00000544417	ENST00000461089		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-3UTR	ENST00000559220	ENST00000340308		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-3UTR	ENST00000559220	ENST00000447932		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-3UTR	ENST00000559220	ENST00000326232		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-intron	ENST00000559220	ENST00000429996		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
3UTR-intron	ENST00000559220	ENST00000461089		ChiTaRS3.1			CA412504	B2M	chr15	45010212	-	SLC37A3	chr7	140033658	+
intron-3CDS	ENST00000313367	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000313367	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000313367	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000431825	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000431825	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000431825	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000352860	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000352860	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000352860	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000353930	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000353930	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000353930	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000396431	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000396431	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000396431	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000409069	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000409069	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000409069	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000396429	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000396429	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000396429	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000487020	ENST00000250448		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3CDS	ENST00000487020	ENST00000540786		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-5UTR	ENST00000487020	ENST00000545425		ChiTaRS3.1			AA371447	OSBPL3	chr7	24843941	-	FOXA1	chr14	38060665	-
intron-3UTR	ENST00000359895	ENST00000262803		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000359895	ENST00000599848		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000359895	ENST00000600310		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000356618	ENST00000262803		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000356618	ENST00000599848		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000356618	ENST00000600310		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000355841	ENST00000262803		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000355841	ENST00000599848		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000355841	ENST00000600310		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000505746	ENST00000262803		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000505746	ENST00000599848		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000505746	ENST00000600310		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000393551	ENST00000262803		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000393551	ENST00000599848		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000393551	ENST00000600310		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000355572	ENST00000262803		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-3UTR	ENST00000355572	ENST00000599848		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000355572	ENST00000600310		ChiTaRS3.1			AI080584	PDLIM7	chr5	176910496	+	UPF1	chr19	18978932	-
intron-intron	ENST00000331925	ENST00000377795		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000331925	ENST00000353334		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000331925	ENST00000524315		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000331925	ENST00000009530		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000573283	ENST00000377795		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000573283	ENST00000353334		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000573283	ENST00000524315		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000573283	ENST00000009530		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575842	ENST00000377795		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575842	ENST00000353334		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575842	ENST00000524315		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575842	ENST00000009530		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575087	ENST00000377795		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575087	ENST00000353334		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575087	ENST00000524315		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-intron	ENST00000575087	ENST00000009530		ChiTaRS3.1			BF884382	ACTG1	chr17	79478533	-	CD74	chr5	149782529	-
intron-3CDS	ENST00000411780	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000411780	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000411780	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000411780	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000411780	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000411780	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000411780	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397137	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000373537	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000414542	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397135	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397134	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000279036		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000279035		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000372689		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000545755		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000535404		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000341555		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000397131	ENST00000543458		ChiTaRS3.1			DA420206	BLCAP	chr20	36147634	-	PIGT	chr20	44049178	+
intron-3CDS	ENST00000310496	ENST00000319006		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-3CDS	ENST00000310496	ENST00000528097		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-intron	ENST00000310496	ENST00000532202		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-3CDS	ENST00000429557	ENST00000319006		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-3CDS	ENST00000429557	ENST00000528097		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-intron	ENST00000429557	ENST00000532202		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-3CDS	ENST00000584838	ENST00000319006		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-3CDS	ENST00000584838	ENST00000528097		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-intron	ENST00000584838	ENST00000532202		ChiTaRS3.1			AW408845	RFNG	chr17	80005846	+	TALDO1	chr11	760226	-
intron-intron	ENST00000357037	ENST00000372390		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-5UTR	ENST00000357037	ENST00000372397		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-intron	ENST00000357037	ENST00000315660		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-intron	ENST00000357037	ENST00000372383		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-intron	ENST00000357037	ENST00000372384		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-intron	ENST00000357037	ENST00000372382		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-intron	ENST00000357037	ENST00000506081		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
intron-intron	ENST00000357037	ENST00000514426		ChiTaRS3.1			DB271724	PTRF	chr17	40574893	-	TSC22D3	chrX	106960102	-
Frame-shit	ENST00000255039	ENST00000382582		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
Frame-shit	ENST00000255039	ENST00000355994		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
Frame-shit	ENST00000255039	ENST00000397875		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
Frame-shit	ENST00000255039	ENST00000397866		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
Frame-shit	ENST00000255039	ENST00000397865		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000527041		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000359645		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000528160		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000397869		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000354542		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000526111		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000580402		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000579129		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000578193		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000397863		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000397860		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
5CDS-intron	ENST00000255039	ENST00000487778		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-3CDS	ENST00000494218	ENST00000382582		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-3CDS	ENST00000494218	ENST00000355994		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-3CDS	ENST00000494218	ENST00000397875		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-3CDS	ENST00000494218	ENST00000397866		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-3CDS	ENST00000494218	ENST00000397865		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000527041		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000359645		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000528160		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000397869		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000354542		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000526111		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000580402		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000579129		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000578193		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000397863		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000397860		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000494218	ENST00000487778		ChiTaRS3.1			DA270267	HAPLN2	chr1	156593369	+	MBP	chr18	74700872	-
intron-intron	ENST00000256854	ENST00000408388		ChiTaRS3.1			BE073927	NARS	chr18	55269624	-	PVT1	chr8	128910187	+
intron-intron	ENST00000423481	ENST00000408388		ChiTaRS3.1			BE073927	NARS	chr18	55269624	-	PVT1	chr8	128910187	+
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000395850		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000533403		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000351554		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000415002		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			AI418396	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-3CDS	ENST00000309060	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000540170	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000559234	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000557816	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000558993	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000544979	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000560361	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000432768	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-3CDS	ENST00000561291	ENST00000376957		ChiTaRS3.1			BE076723	ZHX3	chr20	39809185	-	SRM	chr1	11115924	-
intron-intron	ENST00000528498	ENST00000513595		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-3UTR	ENST00000528498	ENST00000499003		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-intron	ENST00000528900	ENST00000513595		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-3UTR	ENST00000528900	ENST00000499003		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-intron	ENST00000405097	ENST00000513595		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-3UTR	ENST00000405097	ENST00000499003		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-intron	ENST00000530301	ENST00000513595		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-3UTR	ENST00000530301	ENST00000499003		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-intron	ENST00000343115	ENST00000513595		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-3UTR	ENST00000343115	ENST00000499003		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-intron	ENST00000544551	ENST00000513595		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-3UTR	ENST00000544551	ENST00000499003		ChiTaRS3.1			BG108039	RDX	chr5	148875348	-	FOXD1	chr5	72742530	-
intron-intron	ENST00000464611	ENST00000599539		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000464611	ENST00000339471		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000464611	ENST00000251453		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000464611	ENST00000601655		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000331789	ENST00000599539		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000331789	ENST00000339471		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000331789	ENST00000251453		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000331789	ENST00000601655		ChiTaRS3.1			BG773769	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
Frame-shit	ENST00000368003	ENST00000262187		ChiTaRS3.1			AA205051	UFC1	chr1	161123911	+	RHEB	chr7	151188101	-
5CDS-5UTR	ENST00000368003	ENST00000472642		ChiTaRS3.1			AA205051	UFC1	chr1	161123911	+	RHEB	chr7	151188101	-
5CDS-5UTR	ENST00000368003	ENST00000496004		ChiTaRS3.1			AA205051	UFC1	chr1	161123911	+	RHEB	chr7	151188101	-
3UTR-3CDS	ENST00000473766	ENST00000262187		ChiTaRS3.1			AA205051	UFC1	chr1	161123911	+	RHEB	chr7	151188101	-
3UTR-5UTR	ENST00000473766	ENST00000472642		ChiTaRS3.1			AA205051	UFC1	chr1	161123911	+	RHEB	chr7	151188101	-
3UTR-5UTR	ENST00000473766	ENST00000496004		ChiTaRS3.1			AA205051	UFC1	chr1	161123911	+	RHEB	chr7	151188101	-
intron-5UTR	ENST00000552491	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000547825	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000552823	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000394943	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000341247	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000552783	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000552909	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
intron-5UTR	ENST00000552008	ENST00000285243		ChiTaRS3.1			DA082563	LIMA1	chr12	50642532	-	ANKRD40	chr17	48785018	-
5UTR-3CDS	ENST00000419152	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000419152	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000419152	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000532400	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000532400	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000532400	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000532741	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000532741	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
intron-intron	ENST00000532741	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000317198	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
intron-3CDS	ENST00000317198	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
intron-intron	ENST00000317198	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000526838	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000526838	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000526838	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000442189	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000442189	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000442189	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000528610	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000528610	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000528610	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000423316	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000423316	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000423316	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000395119	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000395119	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000395119	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000529272	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000529272	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000529272	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000531621	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000531621	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000531621	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000524624	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000524624	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000524624	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000531770	ENST00000458578		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-3CDS	ENST00000531770	ENST00000342192		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5UTR-intron	ENST00000531770	ENST00000545681		ChiTaRS3.1			DB154094	EEF1D	chr8	144679517	-	UBE2L3	chr22	21947150	+
5CDS-3UTR	ENST00000394196	ENST00000229270		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000394196	ENST00000396705		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-intron	ENST00000394196	ENST00000488464		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000394196	ENST00000535434		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000557381	ENST00000229270		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000557381	ENST00000396705		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-intron	ENST00000557381	ENST00000488464		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000557381	ENST00000535434		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000420239	ENST00000229270		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000420239	ENST00000396705		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-intron	ENST00000420239	ENST00000488464		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000420239	ENST00000535434		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000536619	ENST00000229270		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000536619	ENST00000396705		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-intron	ENST00000536619	ENST00000488464		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
5CDS-3UTR	ENST00000536619	ENST00000535434		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
intron-3UTR	ENST00000554122	ENST00000229270		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
intron-3UTR	ENST00000554122	ENST00000396705		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
intron-intron	ENST00000554122	ENST00000488464		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
intron-3UTR	ENST00000554122	ENST00000535434		ChiTaRS3.1			DW413329	CHD2	chr15	93470537	+	TPI1	chr12	6979751	+
intron-3CDS	ENST00000319622	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000565184	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000389093	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000335181	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000568883	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000449901	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000565154	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-3CDS	ENST00000568459	ENST00000322611		ChiTaRS3.1			CF593344	PKM	chr15	72502718	-	BASP1	chr5	17275741	+
intron-intron	ENST00000380394	ENST00000307102		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000380394	ENST00000566326		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000498815	ENST00000307102		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000498815	ENST00000566326		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000380384	ENST00000307102		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000380384	ENST00000566326		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000315377	ENST00000307102		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000315377	ENST00000566326		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000380381	ENST00000307102		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
intron-intron	ENST00000380381	ENST00000566326		ChiTaRS3.1			CD520454	RPS6	chr9	19378437	-	MAP2K1	chr15	66738825	-
3UTR-3UTR	ENST00000260379	ENST00000312960		ChiTaRS3.1			BM768334	RPLP1	chr15	69747886	+	SIAH2	chr3	150459103	-
3UTR-intron	ENST00000260379	ENST00000472885		ChiTaRS3.1			BM768334	RPLP1	chr15	69747886	+	SIAH2	chr3	150459103	-
5CDS-3UTR	ENST00000357790	ENST00000312960		ChiTaRS3.1			BM768334	RPLP1	chr15	69747886	+	SIAH2	chr3	150459103	-
5CDS-intron	ENST00000357790	ENST00000472885		ChiTaRS3.1			BM768334	RPLP1	chr15	69747886	+	SIAH2	chr3	150459103	-
5CDS-3UTR	ENST00000560274	ENST00000312960		ChiTaRS3.1			BM768334	RPLP1	chr15	69747886	+	SIAH2	chr3	150459103	-
5CDS-intron	ENST00000560274	ENST00000472885		ChiTaRS3.1			BM768334	RPLP1	chr15	69747886	+	SIAH2	chr3	150459103	-
5CDS-intron	ENST00000356350	ENST00000316292		ChiTaRS3.1			DA616590	HIST1H2BH	chr6	26252301	+	EEF1A1	chr6	74230756	-
5CDS-intron	ENST00000356350	ENST00000491404		ChiTaRS3.1			DA616590	HIST1H2BH	chr6	26252301	+	EEF1A1	chr6	74230756	-
5CDS-5UTR	ENST00000356350	ENST00000309268		ChiTaRS3.1			DA616590	HIST1H2BH	chr6	26252301	+	EEF1A1	chr6	74230756	-
5CDS-intron	ENST00000356350	ENST00000331523		ChiTaRS3.1			DA616590	HIST1H2BH	chr6	26252301	+	EEF1A1	chr6	74230756	-
intron-3CDS	ENST00000374274	ENST00000570308		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000374274	ENST00000219070		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000374274	ENST00000543485		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000374274	ENST00000437642		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000465030	ENST00000570308		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000465030	ENST00000219070		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000465030	ENST00000543485		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000465030	ENST00000437642		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000276105	ENST00000570308		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000276105	ENST00000219070		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000276105	ENST00000543485		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-3CDS	ENST00000276105	ENST00000437642		ChiTaRS3.1			DA812017	SNX12	chrX	70279597	-	MMP2	chr16	55525772	+
intron-5UTR	ENST00000261866	ENST00000249842		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000261866	ENST00000395118		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000535302	ENST00000249842		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000535302	ENST00000395118		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000427534	ENST00000249842		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000427534	ENST00000395118		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000558319	ENST00000249842		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000558319	ENST00000395118		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000558253	ENST00000249842		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000558253	ENST00000395118		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000559193	ENST00000249842		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000559193	ENST00000395118		ChiTaRS3.1			AK074668	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
3UTR-3UTR	ENST00000284202	ENST00000414645		ChiTaRS3.1			BF589372	IMPACT	chr18	22033421	-	DPY19L4	chr8	95803304	-
3UTR-5UTR	ENST00000438423	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
3UTR-5UTR	ENST00000267811	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
3UTR-5UTR	ENST00000452095	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
3UTR-5UTR	ENST00000333725	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
3UTR-5UTR	ENST00000557843	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
intron-5UTR	ENST00000560764	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
intron-5UTR	ENST00000543579	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
intron-5UTR	ENST00000537840	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
3UTR-5UTR	ENST00000343827	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
intron-5UTR	ENST00000559710	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
intron-5UTR	ENST00000559703	ENST00000331825		ChiTaRS3.1			M10119	TCF12	chr15	57580143	+	FTL	chr19	49468732	+
intron-intron	ENST00000394003	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000394003	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000394003	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000394003	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000394003	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000394003	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000394003	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000394003	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000361874	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000361874	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000407639	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000407639	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000409438	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409438	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000409240	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409240	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000409868	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409868	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000409567	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000409567	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000439616		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000443864		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000447398		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000449767		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000444676		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-3UTR	ENST00000495643	ENST00000222673		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000543843		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
intron-intron	ENST00000495643	ENST00000459672		ChiTaRS3.1			BF851199	DCTN1	chr2	74598245	-	OGDH	chr7	44748019	+
3UTR-intron	ENST00000439590	ENST00000445983		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000439590	ENST00000431381		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000439590	ENST00000373619		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000439590	ENST00000246139		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000445983		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000431381		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000373619		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000311111	ENST00000246139		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000445983		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000431381		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000373619		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000584577	ENST00000246139		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000445983		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000431381		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000373619		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-5UTR	ENST00000534490	ENST00000246139		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000445983		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000431381		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000373619		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000533498	ENST00000246139		ChiTaRS3.1			BE388615	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
5CDS-intron	ENST00000588240	ENST00000513238		ChiTaRS3.1			AV752143	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000588240	ENST00000307428		ChiTaRS3.1			AV752143	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000513238		ChiTaRS3.1			AV752143	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000307428		ChiTaRS3.1			AV752143	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000513238		ChiTaRS3.1			AV752143	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000307428		ChiTaRS3.1			AV752143	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
3UTR-intron	ENST00000242719	ENST00000340844		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
3UTR-intron	ENST00000242719	ENST00000448121		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
3UTR-intron	ENST00000242719	ENST00000328092		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
3UTR-intron	ENST00000242719	ENST00000590030		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
3UTR-intron	ENST00000242719	ENST00000588756		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
3UTR-intron	ENST00000242719	ENST00000446217		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
3UTR-intron	ENST00000242719	ENST00000592784		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000340844		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000448121		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000328092		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000590030		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000588756		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000446217		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
intron-intron	ENST00000494873	ENST00000592784		ChiTaRS3.1			DA412352	RNF11	chr1	51738009	+	NLRP7	chr19	55476712	+
5CDS-3UTR	ENST00000361314	ENST00000367976		ChiTaRS3.1			CV329033	GPX7	chr1	53074032	+	CTGF	chr6	132270134	-
intron-3UTR	ENST00000459779	ENST00000367976		ChiTaRS3.1			CV329033	GPX7	chr1	53074032	+	CTGF	chr6	132270134	-
3UTR-3CDS	ENST00000272102	ENST00000450993		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000272102	ENST00000417849		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000272102	ENST00000432688		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000540651	ENST00000450993		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000540651	ENST00000417849		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000540651	ENST00000432688		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
intron-3CDS	ENST00000478424	ENST00000450993		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
intron-3CDS	ENST00000478424	ENST00000417849		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
intron-3CDS	ENST00000478424	ENST00000432688		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000541182	ENST00000450993		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000541182	ENST00000417849		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
3UTR-3CDS	ENST00000541182	ENST00000432688		ChiTaRS3.1			BQ183357	ARF1	chr1	228286417	-	PLCD4	chr2	219501106	-
5CDS-intron	ENST00000504595	ENST00000370440		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000504595	ENST00000347275		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000504595	ENST00000337393		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000504595	ENST00000361321		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000504595	ENST00000467231		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5UTR-intron	ENST00000510662	ENST00000370440		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5UTR-intron	ENST00000510662	ENST00000347275		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5UTR-intron	ENST00000510662	ENST00000337393		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5UTR-intron	ENST00000510662	ENST00000361321		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5UTR-intron	ENST00000510662	ENST00000467231		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000329673	ENST00000370440		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000329673	ENST00000347275		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000329673	ENST00000337393		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000329673	ENST00000361321		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
5CDS-intron	ENST00000329673	ENST00000467231		ChiTaRS3.1			N88767	FBXL7	chr5	15616116	+	ZNF644	chr1	91454873	-
intron-3CDS	ENST00000539627	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000539627	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000539627	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000604123	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000604123	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000604123	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
5UTR-3CDS	ENST00000413014	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
5UTR-3CDS	ENST00000413014	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
5UTR-intron	ENST00000413014	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000392002	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000392002	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000392002	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000436170	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000436170	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000436170	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000447302	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000447302	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000447302	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000544232	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000544232	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000544232	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000542945	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000542945	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000542945	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000356385	ENST00000532982		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000356385	ENST00000227451		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-intron	ENST00000356385	ENST00000531902		ChiTaRS3.1			BM922123	TMEM91	chr19	41870001	+	DTX4	chr11	58962681	+
intron-3CDS	ENST00000325006	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000325006	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000325006	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000325006	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000325006	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446544	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446544	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446544	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446544	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446544	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000531335	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000531335	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000531335	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000531335	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000531335	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000474594	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000474594	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000474594	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000474594	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000474594	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446212	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446212	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446212	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446212	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446212	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000490911	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000490911	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000490911	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000490911	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000490911	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000472554	ENST00000326799		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000472554	ENST00000376016		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000472554	ENST00000375972		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000472554	ENST00000463270		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000472554	ENST00000477432		ChiTaRS3.1			DA731128	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000508305	ENST00000455895		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000413080		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000341071		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000526031		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000419121		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000446293		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000463967		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000449308		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000455895		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000413080		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000341071		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000526031		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000419121		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000446293		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000463967		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000449308		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000455895		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000413080		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000341071		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000526031		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000419121		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000446293		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000463967		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000449308		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000455895		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000413080		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000341071		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000526031		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000419121		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000446293		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000463967		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000449308		ChiTaRS3.1			BQ335751	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-3CDS	ENST00000322723	ENST00000356401		ChiTaRS3.1			AU133978	NCL	chr2	232326274	-	ARIH2	chr3	48965029	+
intron-3CDS	ENST00000322723	ENST00000449376		ChiTaRS3.1			AU133978	NCL	chr2	232326274	-	ARIH2	chr3	48965029	+
intron-intron	ENST00000322723	ENST00000490095		ChiTaRS3.1			AU133978	NCL	chr2	232326274	-	ARIH2	chr3	48965029	+
intron-intron	ENST00000255631	ENST00000534307		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000528302		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000322535		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000534307		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000528302		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000322535		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000534307		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000528302		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000322535		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000534307		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000528302		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000322535		ChiTaRS3.1			BQ877910	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
3UTR-3UTR	ENST00000248553	ENST00000373302		ChiTaRS3.1			BU737515	HSPB1	chr7	75933537	-	STXBP1	chr9	130454428	-
3UTR-3UTR	ENST00000248553	ENST00000373299		ChiTaRS3.1			BU737515	HSPB1	chr7	75933537	-	STXBP1	chr9	130454428	-
3UTR-intron	ENST00000248553	ENST00000481942		ChiTaRS3.1			BU737515	HSPB1	chr7	75933537	-	STXBP1	chr9	130454428	-
3UTR-3UTR	ENST00000429938	ENST00000373302		ChiTaRS3.1			BU737515	HSPB1	chr7	75933537	-	STXBP1	chr9	130454428	-
3UTR-3UTR	ENST00000429938	ENST00000373299		ChiTaRS3.1			BU737515	HSPB1	chr7	75933537	-	STXBP1	chr9	130454428	-
3UTR-intron	ENST00000429938	ENST00000481942		ChiTaRS3.1			BU737515	HSPB1	chr7	75933537	-	STXBP1	chr9	130454428	-
intron-intron	ENST00000369155	ENST00000395131		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000374606		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000374610		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000374607		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000463584		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000445559		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000452658		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000448594		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000547952		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000491095		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000412289		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000425878		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000442285		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000552711		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000474406		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000431830		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000432391		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000451970		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000547641		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000468094		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-5UTR	ENST00000369155	ENST00000399385		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-5UTR	ENST00000369155	ENST00000399383		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-5UTR	ENST00000369155	ENST00000383207		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-5UTR	ENST00000369155	ENST00000548040		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
intron-intron	ENST00000369155	ENST00000482292		ChiTaRS3.1			BP246346	HIST2H2BE	chr1	149857736	-	PFDN6	chr6	4489620	+
In-frame	ENST00000360803	ENST00000245441		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000360803	ENST00000389868		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000360803	ENST00000530997		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000360803	ENST00000382043		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000360803	ENST00000382041		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000360803	ENST00000324330		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000360803	ENST00000453196		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
5CDS-intron	ENST00000360803	ENST00000486200		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000245441		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000389868		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000530997		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000382043		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000382041		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000324330		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-3CDS	ENST00000491635	ENST00000453196		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-intron	ENST00000491635	ENST00000486200		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000245441		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000389868		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000530997		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000382043		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000382041		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000324330		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000538293	ENST00000453196		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
5CDS-intron	ENST00000538293	ENST00000486200		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000245441		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000389868		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000530997		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000382043		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000382041		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000324330		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
In-frame	ENST00000545048	ENST00000453196		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
5CDS-intron	ENST00000545048	ENST00000486200		ChiTaRS3.1			AW361086	GTPBP4	chr10	1058553	+	NIN	chr14	51226937	-
intron-intron	ENST00000452313	ENST00000544865		ChiTaRS3.1			BP250136	NPIPB7	chr16	28548976	-	SMG6	chr17	2058212	-
intron-intron	ENST00000452313	ENST00000263073		ChiTaRS3.1			BP250136	NPIPB7	chr16	28548976	-	SMG6	chr17	2058212	-
intron-intron	ENST00000452313	ENST00000354901		ChiTaRS3.1			BP250136	NPIPB7	chr16	28548976	-	SMG6	chr17	2058212	-
intron-intron	ENST00000452313	ENST00000536871		ChiTaRS3.1			BP250136	NPIPB7	chr16	28548976	-	SMG6	chr17	2058212	-
intron-intron	ENST00000452313	ENST00000573166		ChiTaRS3.1			BP250136	NPIPB7	chr16	28548976	-	SMG6	chr17	2058212	-
In-frame	ENST00000304636	ENST00000353703		ChiTaRS3.1			BM975208	COL3A1	chr2	189875531	-	YWHAB	chr20	43530285	-
5CDS-3UTR	ENST00000304636	ENST00000479421		ChiTaRS3.1			BM975208	COL3A1	chr2	189875531	-	YWHAB	chr20	43530285	-
5CDS-3UTR	ENST00000304636	ENST00000372839		ChiTaRS3.1			BM975208	COL3A1	chr2	189875531	-	YWHAB	chr20	43530285	-
In-frame	ENST00000317840	ENST00000353703		ChiTaRS3.1			BM975208	COL3A1	chr2	189875531	-	YWHAB	chr20	43530285	-
5CDS-3UTR	ENST00000317840	ENST00000479421		ChiTaRS3.1			BM975208	COL3A1	chr2	189875531	-	YWHAB	chr20	43530285	-
5CDS-3UTR	ENST00000317840	ENST00000372839		ChiTaRS3.1			BM975208	COL3A1	chr2	189875531	-	YWHAB	chr20	43530285	-
intron-3UTR	ENST00000377298	ENST00000380659		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-intron	ENST00000377298	ENST00000484204		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-3UTR	ENST00000361311	ENST00000380659		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-intron	ENST00000361311	ENST00000484204		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-3UTR	ENST00000377288	ENST00000380659		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-intron	ENST00000377288	ENST00000484204		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-3UTR	ENST00000477264	ENST00000380659		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-intron	ENST00000477264	ENST00000484204		ChiTaRS3.1			CB047121	CLSTN1	chr1	9851579	-	TLR7	chrX	12907229	-
intron-3UTR	ENST00000394332	ENST00000377038		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000394332	ENST00000377036		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000394333	ENST00000377038		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000394333	ENST00000377036		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000479035	ENST00000377038		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000479035	ENST00000377036		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000245857	ENST00000377038		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000245857	ENST00000377036		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000577407	ENST00000377038		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000577407	ENST00000377036		ChiTaRS3.1			AI968908	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3CDS	ENST00000519356	ENST00000367714		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000519356	ENST00000466087		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000519356	ENST00000536496		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-3CDS	ENST00000360742	ENST00000367714		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000360742	ENST00000466087		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000360742	ENST00000536496		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-3CDS	ENST00000431156	ENST00000367714		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000431156	ENST00000466087		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000431156	ENST00000536496		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-3CDS	ENST00000520636	ENST00000367714		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000520636	ENST00000466087		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-intron	ENST00000520636	ENST00000536496		ChiTaRS3.1			BU568210	TTI2	chr8	33356597	-	SLC9C2	chr1	173570891	-
intron-3CDS	ENST00000216281	ENST00000231134		ChiTaRS3.1			CN256724	HSP90AA1	chr14	102551303	-	PCDHB5	chr5	140517319	+
intron-3CDS	ENST00000334701	ENST00000231134		ChiTaRS3.1			CN256724	HSP90AA1	chr14	102551303	-	PCDHB5	chr5	140517319	+
intron-3CDS	ENST00000441629	ENST00000231134		ChiTaRS3.1			CN256724	HSP90AA1	chr14	102551303	-	PCDHB5	chr5	140517319	+
intron-3CDS	ENST00000558600	ENST00000231134		ChiTaRS3.1			CN256724	HSP90AA1	chr14	102551303	-	PCDHB5	chr5	140517319	+
5CDS-intron	ENST00000309859	ENST00000370656		ChiTaRS3.1			AW977393	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000309859	ENST00000370654		ChiTaRS3.1			AW977393	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000567468	ENST00000370656		ChiTaRS3.1			AW977393	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000567468	ENST00000370654		ChiTaRS3.1			AW977393	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-intron	ENST00000569182	ENST00000370656		ChiTaRS3.1			AW977393	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-intron	ENST00000569182	ENST00000370654		ChiTaRS3.1			AW977393	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-3CDS	ENST00000216281	ENST00000306846		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000216281	ENST00000436644		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000216281	ENST00000338972		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000216281	ENST00000514514		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000306846		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000436644		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000338972		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000514514		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000306846		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000436644		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000338972		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000514514		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000306846		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000436644		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000338972		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000514514		ChiTaRS3.1			BU734173	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000349769	ENST00000330722		ChiTaRS3.1			BI016625	CPSF1	chr8	145618700	-	KRT6A	chr12	52881596	-
intron-3CDS	ENST00000531727	ENST00000330722		ChiTaRS3.1			BI016625	CPSF1	chr8	145618700	-	KRT6A	chr12	52881596	-
3UTR-intron	ENST00000534336	ENST00000304031		ChiTaRS3.1			BF879858	MALAT1	chr11	65267997	+	HS1BP3	chr2	20837483	-
3UTR-3UTR	ENST00000534336	ENST00000402541		ChiTaRS3.1			BF879858	MALAT1	chr11	65267997	+	HS1BP3	chr2	20837483	-
3UTR-intron	ENST00000534336	ENST00000406618		ChiTaRS3.1			BF879858	MALAT1	chr11	65267997	+	HS1BP3	chr2	20837483	-
intron-3CDS	ENST00000296805	ENST00000538630		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000296805	ENST00000376601		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000296805	ENST00000376603		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000296805	ENST00000376624		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-intron	ENST00000296805	ENST00000313311		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3UTR	ENST00000296805	ENST00000490361		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000345239	ENST00000538630		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000345239	ENST00000376601		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000345239	ENST00000376603		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000345239	ENST00000376624		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-intron	ENST00000345239	ENST00000313311		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3UTR	ENST00000345239	ENST00000490361		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000509430	ENST00000538630		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000509430	ENST00000376601		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000509430	ENST00000376603		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000509430	ENST00000376624		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-intron	ENST00000509430	ENST00000313311		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3UTR	ENST00000509430	ENST00000490361		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000427854	ENST00000538630		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000427854	ENST00000376601		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000427854	ENST00000376603		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000427854	ENST00000376624		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-intron	ENST00000427854	ENST00000313311		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3UTR	ENST00000427854	ENST00000490361		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000515125	ENST00000538630		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000515125	ENST00000376601		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000515125	ENST00000376603		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000515125	ENST00000376624		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-intron	ENST00000515125	ENST00000313311		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3UTR	ENST00000515125	ENST00000490361		ChiTaRS3.1			CN357114	GFM2	chr5	74056752	-	SPAG6	chr10	22699957	+
intron-3CDS	ENST00000390548	ENST00000440768		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-3CDS	ENST00000390548	ENST00000359197		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-3CDS	ENST00000390548	ENST00000343574		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-3CDS	ENST00000390548	ENST00000331340		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000349824		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000357364		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000346667		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000438033		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000439701		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000413698		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
intron-intron	ENST00000390548	ENST00000492782		ChiTaRS3.1			AA814418	IGHG1	chr22	23243555	-	IKZF1	chr7	50450312	-
5CDS-3UTR	ENST00000317551	ENST00000463899		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5CDS-intron	ENST00000317551	ENST00000367555		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5CDS-intron	ENST00000317551	ENST00000367554		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5CDS-intron	ENST00000317551	ENST00000367553		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5CDS-intron	ENST00000317551	ENST00000367550		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5CDS-intron	ENST00000317551	ENST00000258317		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5CDS-intron	ENST00000317551	ENST00000367552		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-3UTR	ENST00000422340	ENST00000463899		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000422340	ENST00000367555		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000422340	ENST00000367554		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000422340	ENST00000367553		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000422340	ENST00000367550		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000422340	ENST00000258317		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000422340	ENST00000367552		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-3UTR	ENST00000547852	ENST00000463899		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000547852	ENST00000367555		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000547852	ENST00000367554		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000547852	ENST00000367553		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000547852	ENST00000367550		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000547852	ENST00000258317		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
5UTR-intron	ENST00000547852	ENST00000367552		ChiTaRS3.1			BU181747	CERS5	chr12	50560884	-	NPL	chr1	182791249	+
intron-3CDS	ENST00000542515	ENST00000529631		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000542515	ENST00000529191		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-5UTR	ENST00000542515	ENST00000273550		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000542515	ENST00000526640		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000542515	ENST00000532601		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000279147	ENST00000529631		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000279147	ENST00000529191		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-5UTR	ENST00000279147	ENST00000273550		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000279147	ENST00000526640		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000279147	ENST00000532601		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000536870	ENST00000529631		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000536870	ENST00000529191		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-5UTR	ENST00000536870	ENST00000273550		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000536870	ENST00000526640		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000536870	ENST00000532601		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000535657	ENST00000529631		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000535657	ENST00000529191		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-5UTR	ENST00000535657	ENST00000273550		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000535657	ENST00000526640		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000535657	ENST00000532601		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000539414	ENST00000529631		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000539414	ENST00000529191		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-5UTR	ENST00000539414	ENST00000273550		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000539414	ENST00000526640		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000539414	ENST00000532601		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000542341	ENST00000529631		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3CDS	ENST00000542341	ENST00000529191		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-5UTR	ENST00000542341	ENST00000273550		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000542341	ENST00000526640		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-intron	ENST00000542341	ENST00000532601		ChiTaRS3.1			AK054816	ORAOV1	chr11	69481537	-	FTH1	chr11	61735103	-
intron-3UTR	ENST00000452957	ENST00000458501		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-3UTR	ENST00000452957	ENST00000379644		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000452957	ENST00000297798		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000452957	ENST00000521576		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-3UTR	ENST00000407997	ENST00000458501		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-3UTR	ENST00000407997	ENST00000379644		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000407997	ENST00000297798		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000407997	ENST00000521576		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-3UTR	ENST00000461827	ENST00000458501		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-3UTR	ENST00000461827	ENST00000379644		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000461827	ENST00000297798		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000461827	ENST00000521576		ChiTaRS3.1			AI919317	APOBEC3G	chr22	39472373	-	HGSNAT	chr8	43057460	-
intron-intron	ENST00000607838	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000607838	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000607838	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000607838	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000607838	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000591724	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000591724	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000591724	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000591724	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000591724	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000332065	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000332065	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000332065	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000332065	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000332065	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000589210	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000589210	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000589210	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000589210	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000589210	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000335146	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000335146	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000335146	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000335146	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000335146	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000467929	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000467929	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000467929	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000467929	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000467929	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000405575	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000405575	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000405575	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000405575	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000405575	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000411744	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000411744	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000411744	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000411744	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000411744	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000406660	ENST00000378103		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000406660	ENST00000378088		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000406660	ENST00000378094		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000406660	ENST00000545786		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-intron	ENST00000406660	ENST00000467252		ChiTaRS3.1			BE062259	EXOC7	chr17	74079455	-	GBA2	chr9	35742144	-
intron-3CDS	ENST00000495963	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
intron-3CDS	ENST00000378284	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
intron-3CDS	ENST00000378272	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
intron-3CDS	ENST00000242827	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
intron-3CDS	ENST00000378270	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
intron-3CDS	ENST00000378282	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
intron-3CDS	ENST00000378268	ENST00000297268		ChiTaRS3.1			BJ997227	EBPL	chr13	50265460	-	COL1A2	chr7	94057159	+
In-frame	ENST00000252699	ENST00000534358		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000252699	ENST00000389506		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000252699	ENST00000354520		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000252699	ENST00000420751		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000424234	ENST00000534358		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000424234	ENST00000389506		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000424234	ENST00000354520		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000424234	ENST00000420751		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000390009	ENST00000534358		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000390009	ENST00000389506		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
In-frame	ENST00000390009	ENST00000354520		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000390009	ENST00000420751		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000497637	ENST00000534358		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000497637	ENST00000389506		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000497637	ENST00000354520		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
intron-3UTR	ENST00000497637	ENST00000420751		ChiTaRS3.1			FM165194	ACTN4	chr19	39138548	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000414722	ENST00000389100		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000414722	ENST00000296615		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000414722	ENST00000381081		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
3UTR-3CDS	ENST00000435944	ENST00000389100		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
3UTR-intron	ENST00000435944	ENST00000296615		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
3UTR-intron	ENST00000435944	ENST00000381081		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-3CDS	ENST00000454857	ENST00000389100		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000454857	ENST00000296615		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000454857	ENST00000381081		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
3UTR-3CDS	ENST00000439517	ENST00000389100		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
3UTR-intron	ENST00000439517	ENST00000296615		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
3UTR-intron	ENST00000439517	ENST00000381081		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-3CDS	ENST00000426021	ENST00000389100		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000426021	ENST00000296615		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000426021	ENST00000381081		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-3CDS	ENST00000454781	ENST00000389100		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000454781	ENST00000296615		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
intron-intron	ENST00000454781	ENST00000381081		ChiTaRS3.1			BM680777	CASC2	chr10	119967000	-	RNF180	chr5	63621048	-
Frame-shit	ENST00000320583	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000320583	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000357864	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000357864	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000252713	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000252713	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000454654	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000454654	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000449244	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000449244	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000425063	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000425063	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000493277	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000493277	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000424881	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000424881	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000440391	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000440391	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000394163	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000394163	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
intron-3CDS	ENST00000419215	ENST00000355451		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
intron-5UTR	ENST00000419215	ENST00000460110		ChiTaRS3.1			AK127163	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
intron-3CDS	ENST00000374274	ENST00000313386		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-3CDS	ENST00000374274	ENST00000515098		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-intron	ENST00000374274	ENST00000542098		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-3CDS	ENST00000465030	ENST00000313386		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-3CDS	ENST00000465030	ENST00000515098		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-intron	ENST00000465030	ENST00000542098		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-3CDS	ENST00000276105	ENST00000313386		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-3CDS	ENST00000276105	ENST00000515098		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
intron-intron	ENST00000276105	ENST00000542098		ChiTaRS3.1			BP274873	SNX12	chrX	70282730	-	RMND5B	chr5	177565175	+
3UTR-3UTR	ENST00000337179	ENST00000397130		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000337179	ENST00000323443		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000337179	ENST00000563454		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000415493	ENST00000397130		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000415493	ENST00000323443		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000415493	ENST00000563454		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000549992	ENST00000397130		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000549992	ENST00000323443		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
3UTR-3UTR	ENST00000549992	ENST00000563454		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3UTR	ENST00000548662	ENST00000397130		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3UTR	ENST00000548662	ENST00000323443		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3UTR	ENST00000548662	ENST00000563454		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3UTR	ENST00000547014	ENST00000397130		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3UTR	ENST00000547014	ENST00000323443		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3UTR	ENST00000547014	ENST00000563454		ChiTaRS3.1			BM557162	NUDT4	chr12	93794342	+	LRRC57	chr15	42835190	-
intron-3CDS	ENST00000301488	ENST00000551018		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-intron	ENST00000301488	ENST00000351500		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-intron	ENST00000301488	ENST00000550846		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-intron	ENST00000301488	ENST00000334478		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-3CDS	ENST00000531506	ENST00000551018		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-intron	ENST00000531506	ENST00000351500		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-intron	ENST00000531506	ENST00000550846		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-intron	ENST00000531506	ENST00000334478		ChiTaRS3.1			AI351791	CDK2AP2	chr11	67274432	+	PFDN5	chr12	53689685	-
intron-5UTR	ENST00000341516	ENST00000370790		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000341516	ENST00000343004		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000341516	ENST00000298090		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000341516	ENST00000486347		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000341516	ENST00000493333		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-5UTR	ENST00000554215	ENST00000370790		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000554215	ENST00000343004		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000554215	ENST00000298090		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000554215	ENST00000486347		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000554215	ENST00000493333		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-5UTR	ENST00000556847	ENST00000370790		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000556847	ENST00000343004		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000556847	ENST00000298090		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000556847	ENST00000486347		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000556847	ENST00000493333		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-5UTR	ENST00000557386	ENST00000370790		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000557386	ENST00000343004		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000557386	ENST00000298090		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000557386	ENST00000486347		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000557386	ENST00000493333		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-5UTR	ENST00000389997	ENST00000370790		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000389997	ENST00000343004		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000389997	ENST00000298090		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000389997	ENST00000486347		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000389997	ENST00000493333		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-5UTR	ENST00000553293	ENST00000370790		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000553293	ENST00000343004		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000553293	ENST00000298090		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000553293	ENST00000486347		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-intron	ENST00000553293	ENST00000493333		ChiTaRS3.1			AW375215	DCAF5	chr14	69522255	-	FAM122B	chrX	133930790	-
intron-3CDS	ENST00000517997	ENST00000261883		ChiTaRS3.1			BF768984	CDK16	chrX	47088019	+	CILP	chr15	65490196	-
Frame-shit	ENST00000457458	ENST00000261883		ChiTaRS3.1			BF768984	CDK16	chrX	47088019	+	CILP	chr15	65490196	-
Frame-shit	ENST00000357227	ENST00000261883		ChiTaRS3.1			BF768984	CDK16	chrX	47088019	+	CILP	chr15	65490196	-
Frame-shit	ENST00000518022	ENST00000261883		ChiTaRS3.1			BF768984	CDK16	chrX	47088019	+	CILP	chr15	65490196	-
Frame-shit	ENST00000276052	ENST00000261883		ChiTaRS3.1			BF768984	CDK16	chrX	47088019	+	CILP	chr15	65490196	-
intron-intron	ENST00000298894	ENST00000223864		ChiTaRS3.1			AI762460	MOAP1	chr14	93649020	+	PLGRKT	chr9	5570206	-
intron-intron	ENST00000298894	ENST00000482696		ChiTaRS3.1			AI762460	MOAP1	chr14	93649020	+	PLGRKT	chr9	5570206	-
intron-intron	ENST00000556883	ENST00000223864		ChiTaRS3.1			AI762460	MOAP1	chr14	93649020	+	PLGRKT	chr9	5570206	-
intron-intron	ENST00000556883	ENST00000482696		ChiTaRS3.1			AI762460	MOAP1	chr14	93649020	+	PLGRKT	chr9	5570206	-
In-frame	ENST00000296674	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000296674	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000296674	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000296674	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000296674	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
Frame-shit	ENST00000510210	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510210	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510210	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510210	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510210	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
In-frame	ENST00000512493	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000512493	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000512493	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000512493	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000512493	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
In-frame	ENST00000510019	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510019	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510019	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510019	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000510019	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
In-frame	ENST00000507980	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000507980	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000507980	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000507980	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-intron	ENST00000507980	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5UTR-3CDS	ENST00000503605	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5UTR-intron	ENST00000503605	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5UTR-intron	ENST00000503605	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5UTR-intron	ENST00000503605	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5UTR-intron	ENST00000503605	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
intron-3CDS	ENST00000511844	ENST00000435275		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
intron-intron	ENST00000511844	ENST00000440692		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
intron-intron	ENST00000511844	ENST00000372360		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
intron-intron	ENST00000511844	ENST00000476545		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
intron-intron	ENST00000511844	ENST00000360830		ChiTaRS3.1			AI908980	RPS23	chr5	81573514	-	RPS24	chr10	79799960	+
5CDS-3UTR	ENST00000417098	ENST00000367187		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000417098	ENST00000424712		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-intron	ENST00000417098	ENST00000496872		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000443023	ENST00000367187		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000443023	ENST00000424712		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-intron	ENST00000443023	ENST00000496872		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000260926	ENST00000367187		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000260926	ENST00000424712		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-intron	ENST00000260926	ENST00000496872		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000428695	ENST00000367187		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000428695	ENST00000424712		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-intron	ENST00000428695	ENST00000496872		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000457245	ENST00000367187		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-3UTR	ENST00000457245	ENST00000424712		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
5CDS-intron	ENST00000457245	ENST00000496872		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
intron-3UTR	ENST00000484124	ENST00000367187		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
intron-3UTR	ENST00000484124	ENST00000424712		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
intron-intron	ENST00000484124	ENST00000496872		ChiTaRS3.1			BF363056	SATB2	chr2	200173481	-	PIK3C2B	chr1	204393859	-
3UTR-intron	ENST00000553781	ENST00000441682		ChiTaRS3.1			BF512006	BCL2L2-PABPN1	chr14	23794517	-	CYP4F8	chr19	15734186	-
3UTR-intron	ENST00000557008	ENST00000441682		ChiTaRS3.1			BF512006	BCL2L2-PABPN1	chr14	23794517	-	CYP4F8	chr19	15734186	-
3UTR-intron	ENST00000439590	ENST00000445983		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000439590	ENST00000431381		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000439590	ENST00000373619		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000439590	ENST00000246139		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000445983		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000431381		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000373619		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000311111	ENST00000246139		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000445983		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000431381		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000373619		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000584577	ENST00000246139		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000445983		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000431381		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000373619		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-5UTR	ENST00000534490	ENST00000246139		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000445983		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000431381		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000373619		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000533498	ENST00000246139		ChiTaRS3.1			BE409397	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
Frame-shit	ENST00000320954	ENST00000216038		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
Frame-shit	ENST00000320954	ENST00000451746		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
5CDS-5UTR	ENST00000320954	ENST00000476619		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
Frame-shit	ENST00000449224	ENST00000216038		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
Frame-shit	ENST00000449224	ENST00000451746		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
5CDS-5UTR	ENST00000449224	ENST00000476619		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
3UTR-3CDS	ENST00000485310	ENST00000216038		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
3UTR-3CDS	ENST00000485310	ENST00000451746		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
3UTR-5UTR	ENST00000485310	ENST00000476619		ChiTaRS3.1			DB024370	CRTAP	chr3	33161972	+	RTCB	chr22	32797841	-
Frame-shit	ENST00000497547	ENST00000568107		ChiTaRS3.1			BQ308823	RRP1	chr21	45217839	+	GAN	chr16	81397417	+
5CDS-intron	ENST00000497547	ENST00000567335		ChiTaRS3.1			BQ308823	RRP1	chr21	45217839	+	GAN	chr16	81397417	+
3UTR-3CDS	ENST00000471909	ENST00000568107		ChiTaRS3.1			BQ308823	RRP1	chr21	45217839	+	GAN	chr16	81397417	+
3UTR-intron	ENST00000471909	ENST00000567335		ChiTaRS3.1			BQ308823	RRP1	chr21	45217839	+	GAN	chr16	81397417	+
intron-intron	ENST00000376406	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000376405	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000494654	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000427406	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000547874	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000551460	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000547700	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000481026	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000552522	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000420019	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000548112	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000550004	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000548103	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000473187	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000552474	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000420320	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000552263	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000551204	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000549428	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000495325	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000547681	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000449153	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000553048	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000546487	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000553196	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000494715	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000547353	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000383566	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000548827	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000552349	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000550408	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000481547	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000550688	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000440369	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000547047	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000548542	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000548248	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000482029	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000550500	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000435664	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000548433	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000551740	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000467476	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000546539	ENST00000390168		ChiTaRS3.1			AA460447	MDC1	chr6	2000465	-	H19	chr11	2019027	-
intron-intron	ENST00000267803	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000267803	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000267803	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000267803	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000267803	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000267803	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000267803	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559014	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558996	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000430224	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000558422	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000560572	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000267803		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000559014		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000558996		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000430224		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000558422		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000560572		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
intron-intron	ENST00000559407	ENST00000559407		ChiTaRS3.1			AK027187	DUOXA1	chr15	45410757	-	DUOXA1	chr9	19380233	-
5CDS-intron	ENST00000547405	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000547405	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000547405	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000547405	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000452455	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000452455	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000452455	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000452455	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000360610	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000360610	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000360610	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000360610	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000441232	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000441232	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000441232	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000441232	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000392934	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000392934	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000392934	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000392934	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000547509	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000547509	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000547509	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000547509	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000361685	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000361685	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000361685	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000361685	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
intron-intron	ENST00000550501	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
intron-intron	ENST00000550501	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
intron-intron	ENST00000550501	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
intron-3UTR	ENST00000550501	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000549145	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000549145	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000549145	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000549145	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000553190	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000553190	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000553190	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000553190	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000536007	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000536007	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000536007	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000536007	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000541119	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000541119	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000541119	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000541119	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000545503	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000545503	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000545503	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000545503	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000361466	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000361466	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000361466	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000361466	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5UTR-intron	ENST00000551300	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5UTR-intron	ENST00000551300	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5UTR-intron	ENST00000551300	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5UTR-3UTR	ENST00000551300	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000550270	ENST00000378300		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000550270	ENST00000378292		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-intron	ENST00000550270	ENST00000329305		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000550270	ENST00000360958		ChiTaRS3.1			AA196377	MYBPC1	chr12	102023309	+	TPM2	chr9	35683079	-
5CDS-3UTR	ENST00000439155	ENST00000322507		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000439155	ENST00000345356		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000439155	ENST00000416123		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000439155	ENST00000483888		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000439155	ENST00000511023		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-3UTR	ENST00000367429	ENST00000322507		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000367429	ENST00000345356		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000367429	ENST00000416123		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000367429	ENST00000483888		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000367429	ENST00000511023		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
intron-3UTR	ENST00000496761	ENST00000322507		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
intron-intron	ENST00000496761	ENST00000345356		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
intron-intron	ENST00000496761	ENST00000416123		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
intron-intron	ENST00000496761	ENST00000483888		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
intron-intron	ENST00000496761	ENST00000511023		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-3UTR	ENST00000359637	ENST00000322507		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000359637	ENST00000345356		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000359637	ENST00000416123		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000359637	ENST00000483888		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
5CDS-intron	ENST00000359637	ENST00000511023		ChiTaRS3.1			AW371066	CFH	chr1	196654356	+	COL12A1	chr6	75794740	-
intron-3UTR	ENST00000272203	ENST00000349459		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-3UTR	ENST00000272203	ENST00000320740		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-intron	ENST00000272203	ENST00000524466		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-intron	ENST00000272203	ENST00000531856		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-3UTR	ENST00000414478	ENST00000349459		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-3UTR	ENST00000414478	ENST00000320740		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-intron	ENST00000414478	ENST00000524466		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-intron	ENST00000414478	ENST00000531856		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-3UTR	ENST00000485632	ENST00000349459		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-3UTR	ENST00000485632	ENST00000320740		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-intron	ENST00000485632	ENST00000524466		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-intron	ENST00000485632	ENST00000531856		ChiTaRS3.1			BI033034	PLEKHA6	chr1	204191287	-	PELI3	chr11	66244217	+
intron-3CDS	ENST00000390548	ENST00000337147		ChiTaRS3.1			AW594736	IGHG1	chr22	23243516	-	EZR	chr6	159197496	+
intron-3CDS	ENST00000390548	ENST00000367075		ChiTaRS3.1			AW594736	IGHG1	chr22	23243516	-	EZR	chr6	159197496	+
intron-3CDS	ENST00000390548	ENST00000392177		ChiTaRS3.1			AW594736	IGHG1	chr22	23243516	-	EZR	chr6	159197496	+
intron-intron	ENST00000390548	ENST00000476189		ChiTaRS3.1			AW594736	IGHG1	chr22	23243516	-	EZR	chr6	159197496	+
intron-3CDS	ENST00000392521	ENST00000427159		ChiTaRS3.1			BF933857	CIT	chr12	120135327	-	FTSJ3	chr17	61901741	-
intron-intron	ENST00000392521	ENST00000580295		ChiTaRS3.1			BF933857	CIT	chr12	120135327	-	FTSJ3	chr17	61901741	-
intron-3CDS	ENST00000261833	ENST00000427159		ChiTaRS3.1			BF933857	CIT	chr12	120135327	-	FTSJ3	chr17	61901741	-
intron-intron	ENST00000261833	ENST00000580295		ChiTaRS3.1			BF933857	CIT	chr12	120135327	-	FTSJ3	chr17	61901741	-
intron-3CDS	ENST00000537607	ENST00000427159		ChiTaRS3.1			BF933857	CIT	chr12	120135327	-	FTSJ3	chr17	61901741	-
intron-intron	ENST00000537607	ENST00000580295		ChiTaRS3.1			BF933857	CIT	chr12	120135327	-	FTSJ3	chr17	61901741	-
intron-intron	ENST00000360540	ENST00000609205		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000360540	ENST00000360270		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000544451	ENST00000609205		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000544451	ENST00000360270		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000519559	ENST00000609205		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000519559	ENST00000360270		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000522514	ENST00000609205		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000522514	ENST00000360270		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000521344	ENST00000609205		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
intron-intron	ENST00000521344	ENST00000360270		ChiTaRS3.1			BQ331576	PCMTD1	chr8	52762170	-	MSN	chrX	64887536	+
Frame-shit	ENST00000337190	ENST00000157812		ChiTaRS3.1			BP432759	MXD4	chr4	2259708	-	PSMC4	chr19	40485976	+
Frame-shit	ENST00000337190	ENST00000455878		ChiTaRS3.1			BP432759	MXD4	chr4	2259708	-	PSMC4	chr19	40485976	+
5UTR-3CDS	ENST00000515378	ENST00000157812		ChiTaRS3.1			BP432759	MXD4	chr4	2259708	-	PSMC4	chr19	40485976	+
5UTR-3CDS	ENST00000515378	ENST00000455878		ChiTaRS3.1			BP432759	MXD4	chr4	2259708	-	PSMC4	chr19	40485976	+
intron-intron	ENST00000377897	ENST00000361156		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000347108		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000361396		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000376829		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000466027		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000361156		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000347108		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000361396		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000376829		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000466027		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000361156		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000347108		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000361396		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000376829		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000466027		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000361156		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000347108		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000361396		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000376829		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000466027		ChiTaRS3.1			BF083373	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-3CDS	ENST00000560410	ENST00000520552		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000335659		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519597		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000520311		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519316		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000560410	ENST00000524319		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520552		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000335659		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519597		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520311		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519316		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000216802	ENST00000524319		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520552		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000335659		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519597		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520311		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519316		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000471700	ENST00000524319		ChiTaRS3.1			AV651403	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000445403	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000445403	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000445403	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-3CDS	ENST00000373578	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-3UTR	ENST00000373578	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
5UTR-5UTR	ENST00000373578	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3CDS	ENST00000360723	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000360723	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000360723	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3CDS	ENST00000358208	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000358208	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000358208	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3CDS	ENST00000373567	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000373567	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373567	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3CDS	ENST00000373558	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000373558	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000373558	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3CDS	ENST00000477066	ENST00000479668		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000540729		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000444957		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000397281		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000466559		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000489432		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000482680		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000518514		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000477066	ENST00000518462		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-5UTR	ENST00000477066	ENST00000425389		ChiTaRS3.1			DA015724	SRC	chr20	35993680	+	REPIN1	chr7	150068314	+
intron-3UTR	ENST00000267884	ENST00000366663		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000267884	ENST00000470540		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000267884	ENST00000427697		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-intron	ENST00000267884	ENST00000523410		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000558527	ENST00000366663		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000558527	ENST00000470540		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000558527	ENST00000427697		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-intron	ENST00000558527	ENST00000523410		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000558720	ENST00000366663		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000558720	ENST00000470540		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000558720	ENST00000427697		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-intron	ENST00000558720	ENST00000523410		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000560773	ENST00000366663		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000560773	ENST00000470540		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000560773	ENST00000427697		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-intron	ENST00000560773	ENST00000523410		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000559081	ENST00000366663		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000559081	ENST00000470540		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-3UTR	ENST00000559081	ENST00000427697		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-intron	ENST00000559081	ENST00000523410		ChiTaRS3.1			BQ015130	SRP14	chr15	40329550	+	C1orf198	chr1	230973433	+
intron-intron	ENST00000274024	ENST00000305997		ChiTaRS3.1			BP270882	FABP2	chr4	120240727	-	MBOAT2	chr2	9003534	-
intron-intron	ENST00000274024	ENST00000486484		ChiTaRS3.1			BP270882	FABP2	chr4	120240727	-	MBOAT2	chr2	9003534	-
intron-5UTR	ENST00000351960	ENST00000476041		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000351960	ENST00000315732		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000358965	ENST00000476041		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000358965	ENST00000315732		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000393695	ENST00000476041		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000393695	ENST00000315732		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000543450	ENST00000476041		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000543450	ENST00000315732		ChiTaRS3.1			BQ674109	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
In-frame	ENST00000446906	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000446906	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000446906	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000446906	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000446906	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000446906	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377072	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377072	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377072	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377072	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377072	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377072	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000307729	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000307729	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000307729	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000307729	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000307729	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000307729	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377059	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377059	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377059	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377059	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377059	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377059	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
3UTR-3CDS	ENST00000495130	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
3UTR-3CDS	ENST00000495130	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
3UTR-3CDS	ENST00000495130	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
3UTR-3CDS	ENST00000495130	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
3UTR-intron	ENST00000495130	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
3UTR-intron	ENST00000495130	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377100	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377100	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377100	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377100	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377100	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377100	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377091	ENST00000532317		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377091	ENST00000526033		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377091	ENST00000393346		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
In-frame	ENST00000377091	ENST00000528398		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377091	ENST00000356360		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
5CDS-intron	ENST00000377091	ENST00000528411		ChiTaRS3.1			AF060930	MLLT10	chr10	21827842	+	PICALM	chr11	85687726	-
intron-3CDS	ENST00000322723	ENST00000414423		ChiTaRS3.1			BE697397	NCL	chr2	232325510	-	WDR26	chr1	224621543	-
intron-5UTR	ENST00000322723	ENST00000295024		ChiTaRS3.1			BE697397	NCL	chr2	232325510	-	WDR26	chr1	224621543	-
intron-5UTR	ENST00000322723	ENST00000366852		ChiTaRS3.1			BE697397	NCL	chr2	232325510	-	WDR26	chr1	224621543	-
intron-intron	ENST00000322723	ENST00000479727		ChiTaRS3.1			BE697397	NCL	chr2	232325510	-	WDR26	chr1	224621543	-
intron-3UTR	ENST00000238256	ENST00000534336		ChiTaRS3.1			AW361053	FKBP15	chr9	115938892	-	MALAT1	chr11	65267421	+
intron-3UTR	ENST00000493847	ENST00000534336		ChiTaRS3.1			AW361053	FKBP15	chr9	115938892	-	MALAT1	chr11	65267421	+
intron-intron	ENST00000377897	ENST00000361156		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000347108		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000361396		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000376829		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000377897	ENST00000466027		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000361156		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000347108		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000361396		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000376829		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000294179	ENST00000466027		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000361156		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000347108		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000361396		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000376829		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000394690	ENST00000466027		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000361156		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000347108		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000361396		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000376829		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
intron-intron	ENST00000541317	ENST00000466027		ChiTaRS3.1			BF083368	STX5	chr11	62574958	-	DZIP1	chr13	96283075	-
5CDS-intron	ENST00000370978	ENST00000513929		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000253144		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000511593		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000449416		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000411977		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000511154		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000513999		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000512387		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
5CDS-intron	ENST00000370978	ENST00000513265		ChiTaRS3.1			BU176890	ZNF280C	chrX	129394393	-	ZNF331	chr19	54079990	+
In-frame	ENST00000336761	ENST00000464356		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000336761	ENST00000348159		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000336761	ENST00000353795		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000336761	ENST00000340875		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000336761	ENST00000368240		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000336761	ENST00000360595		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000233078	ENST00000464356		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000233078	ENST00000348159		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000233078	ENST00000353795		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000233078	ENST00000340875		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000233078	ENST00000368240		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
In-frame	ENST00000233078	ENST00000360595		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
3UTR-3CDS	ENST00000586579	ENST00000464356		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
3UTR-3CDS	ENST00000586579	ENST00000348159		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
3UTR-3CDS	ENST00000586579	ENST00000353795		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
3UTR-3CDS	ENST00000586579	ENST00000340875		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
3UTR-3CDS	ENST00000586579	ENST00000368240		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
3UTR-3CDS	ENST00000586579	ENST00000360595		ChiTaRS3.1			AY678451	DAZAP1	chr19	1422396	+	MEF2D	chr1	156446996	-
intron-3CDS	ENST00000393283	ENST00000353139		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000393283	ENST00000360679		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000393283	ENST00000394406		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000393283	ENST00000335166		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000393283	ENST00000416895		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000393283	ENST00000361253		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000393283	ENST00000588142		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000393283	ENST00000589665		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000272454	ENST00000353139		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000272454	ENST00000360679		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000272454	ENST00000394406		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000272454	ENST00000335166		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000272454	ENST00000416895		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000272454	ENST00000361253		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000272454	ENST00000588142		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000272454	ENST00000589665		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000016946	ENST00000353139		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000016946	ENST00000360679		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000016946	ENST00000394406		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000016946	ENST00000335166		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000016946	ENST00000416895		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000016946	ENST00000361253		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000016946	ENST00000588142		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000016946	ENST00000589665		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000495582	ENST00000353139		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000495582	ENST00000360679		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000495582	ENST00000394406		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3CDS	ENST00000495582	ENST00000335166		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000495582	ENST00000416895		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000495582	ENST00000361253		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000495582	ENST00000588142		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-intron	ENST00000495582	ENST00000589665		ChiTaRS3.1			BF910869	RGPD5	chr2	113146685	-	ACACA	chr17	35591984	-
intron-3UTR	ENST00000216181	ENST00000246151		ChiTaRS3.1			AX748195	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000216181	ENST00000374524		ChiTaRS3.1			AX748195	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000475726	ENST00000246151		ChiTaRS3.1			AX748195	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000475726	ENST00000374524		ChiTaRS3.1			AX748195	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000401701	ENST00000246151		ChiTaRS3.1			AX748195	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000401701	ENST00000374524		ChiTaRS3.1			AX748195	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-5UTR	ENST00000371837	ENST00000529689		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000371837	ENST00000455220		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000371837	ENST00000525504		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000371837	ENST00000525503		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000371837	ENST00000529611		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000371837	ENST00000529073		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000487618	ENST00000529689		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000487618	ENST00000455220		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000487618	ENST00000525504		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000487618	ENST00000525503		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000487618	ENST00000529611		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000487618	ENST00000529073		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000336233	ENST00000529689		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000336233	ENST00000455220		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000336233	ENST00000525504		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000336233	ENST00000525503		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000336233	ENST00000529611		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000336233	ENST00000529073		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000456827	ENST00000529689		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000456827	ENST00000455220		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000456827	ENST00000525504		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000456827	ENST00000525503		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-5UTR	ENST00000456827	ENST00000529611		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
intron-intron	ENST00000456827	ENST00000529073		ChiTaRS3.1			BP304339	LIPA	chr10	90974470	-	CCDC90B	chr11	82997031	-
3UTR-intron	ENST00000468410	ENST00000283928		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
3UTR-intron	ENST00000468410	ENST00000466516		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
3UTR-intron	ENST00000222574	ENST00000283928		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
3UTR-intron	ENST00000222574	ENST00000466516		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
intron-intron	ENST00000485846	ENST00000283928		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
intron-intron	ENST00000485846	ENST00000466516		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
intron-intron	ENST00000461963	ENST00000283928		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
intron-intron	ENST00000461963	ENST00000466516		ChiTaRS3.1			AI365660	HBP1	chr7	106842272	+	JAZF1	chr7	28187691	+
5CDS-5UTR	ENST00000273130	ENST00000412849		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
5CDS-5UTR	ENST00000273130	ENST00000401392		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
5CDS-5UTR	ENST00000273130	ENST00000264159		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
5CDS-5UTR	ENST00000273130	ENST00000536680		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000412849		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000401392		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000264159		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000536680		ChiTaRS3.1			BM543161	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-3UTR	ENST00000221265	ENST00000591090		ChiTaRS3.1			AA236422	PAF1	chr19	39880146	-	ASNA1	chr19	12859073	+
intron-3UTR	ENST00000221265	ENST00000357332		ChiTaRS3.1			AA236422	PAF1	chr19	39880146	-	ASNA1	chr19	12859073	+
intron-3UTR	ENST00000595564	ENST00000591090		ChiTaRS3.1			AA236422	PAF1	chr19	39880146	-	ASNA1	chr19	12859073	+
intron-3UTR	ENST00000595564	ENST00000357332		ChiTaRS3.1			AA236422	PAF1	chr19	39880146	-	ASNA1	chr19	12859073	+
intron-3UTR	ENST00000221266	ENST00000591090		ChiTaRS3.1			AA236422	PAF1	chr19	39880146	-	ASNA1	chr19	12859073	+
intron-3UTR	ENST00000221266	ENST00000357332		ChiTaRS3.1			AA236422	PAF1	chr19	39880146	-	ASNA1	chr19	12859073	+
Frame-shit	ENST00000259239	ENST00000318445		ChiTaRS3.1			EB387322	IMP4	chr2	131103665	+	SLCO3A1	chr15	92706284	+
5CDS-intron	ENST00000259239	ENST00000424469		ChiTaRS3.1			EB387322	IMP4	chr2	131103665	+	SLCO3A1	chr15	92706284	+
5CDS-3UTR	ENST00000259239	ENST00000555549		ChiTaRS3.1			EB387322	IMP4	chr2	131103665	+	SLCO3A1	chr15	92706284	+
Frame-shit	ENST00000409935	ENST00000318445		ChiTaRS3.1			EB387322	IMP4	chr2	131103665	+	SLCO3A1	chr15	92706284	+
5CDS-intron	ENST00000409935	ENST00000424469		ChiTaRS3.1			EB387322	IMP4	chr2	131103665	+	SLCO3A1	chr15	92706284	+
5CDS-3UTR	ENST00000409935	ENST00000555549		ChiTaRS3.1			EB387322	IMP4	chr2	131103665	+	SLCO3A1	chr15	92706284	+
Frame-shit	ENST00000262039	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000262039	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000262039	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000262039	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
5CDS-intron	ENST00000262039	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000398870	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000398870	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000398870	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000398870	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
5CDS-intron	ENST00000398870	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000586545	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000586545	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000586545	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
Frame-shit	ENST00000586545	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
5CDS-intron	ENST00000586545	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000590220	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000590220	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000590220	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000590220	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-intron	ENST00000590220	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000593098	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000593098	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000593098	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000593098	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-intron	ENST00000593098	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000589056	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000589056	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000589056	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000589056	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-intron	ENST00000589056	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587402	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587402	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587402	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587402	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-intron	ENST00000587402	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000588156	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000588156	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000588156	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000588156	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-intron	ENST00000588156	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587328	ENST00000339788		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587328	ENST00000320816		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587328	ENST00000545653		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-3CDS	ENST00000587328	ENST00000509337		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
intron-intron	ENST00000587328	ENST00000512525		ChiTaRS3.1			DW414072	PIK3C3	chr18	39542478	+	DAB2	chr5	39376168	-
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			D14822	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000408982	ENST00000346169		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000414031		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000392537		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000382330		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000350481		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000352767		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000427845		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000342981		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000319274		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000424196		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000411531		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000441154		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000434061		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000435046		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000346169		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000414031		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000392537		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000382330		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000350481		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000352767		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000427845		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000342981		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000319274		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000424196		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000411531		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000441154		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000434061		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000435046		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000346169		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000414031		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000392537		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000382330		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000350481		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000352767		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000427845		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000342981		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000319274		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000424196		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000411531		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000441154		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000434061		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000435046		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000346169		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000414031		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000392537		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000382330		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000350481		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000352767		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000427845		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000342981		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000319274		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000424196		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000411531		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000441154		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000434061		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000435046		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000346169		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000414031		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000392537		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000382330		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000350481		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000352767		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000427845		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000342981		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000319274		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000424196		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000411531		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000441154		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000434061		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000435046		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000346169		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000414031		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000392537		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000382330		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000350481		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000352767		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000427845		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000342981		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000319274		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000424196		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000411531		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000441154		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000434061		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000435046		ChiTaRS3.1			AI205494	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
3UTR-3CDS	ENST00000530270	ENST00000341394		ChiTaRS3.1			DA398472	RAB30-AS1	chr11	82783749	+	CAPRIN1	chr11	34093273	+
3UTR-3CDS	ENST00000530270	ENST00000389645		ChiTaRS3.1			DA398472	RAB30-AS1	chr11	82783749	+	CAPRIN1	chr11	34093273	+
3UTR-3CDS	ENST00000530270	ENST00000532820		ChiTaRS3.1			DA398472	RAB30-AS1	chr11	82783749	+	CAPRIN1	chr11	34093273	+
3UTR-3CDS	ENST00000530270	ENST00000530820		ChiTaRS3.1			DA398472	RAB30-AS1	chr11	82783749	+	CAPRIN1	chr11	34093273	+
3UTR-5UTR	ENST00000530270	ENST00000529307		ChiTaRS3.1			DA398472	RAB30-AS1	chr11	82783749	+	CAPRIN1	chr11	34093273	+
3UTR-intron	ENST00000530270	ENST00000533657		ChiTaRS3.1			DA398472	RAB30-AS1	chr11	82783749	+	CAPRIN1	chr11	34093273	+
intron-3CDS	ENST00000259467	ENST00000296412		ChiTaRS3.1			CN258364	PDCL	chr9	125588991	-	ADH5	chr4	99993775	-
intron-intron	ENST00000259467	ENST00000512991		ChiTaRS3.1			CN258364	PDCL	chr9	125588991	-	ADH5	chr4	99993775	-
intron-3CDS	ENST00000319622	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000319622	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000319622	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000319622	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000319622	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000319622	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000319622	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000319622	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565184	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000565184	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000389093	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000389093	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000335181	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000335181	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568883	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000568883	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000449901	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000449901	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000565154	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000565154	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000531188		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000530164		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000278572		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000534440		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000527446		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000526608		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-3CDS	ENST00000568459	ENST00000524851		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000568459	ENST00000529285		ChiTaRS3.1			BE388611	PKM	chr15	72501125	-	RPS3	chr11	75110594	+
intron-intron	ENST00000331483	ENST00000404460		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000331483	ENST00000303908		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000331483	ENST00000409158		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000331483	ENST00000403716		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000331483	ENST00000234115		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000331483	ENST00000439822		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000331483	ENST00000487980		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000331483	ENST00000438882		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000331483	ENST00000538982		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000331483	ENST00000409612		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000331483	ENST00000409279		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000576390	ENST00000404460		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000576390	ENST00000303908		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000576390	ENST00000409158		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000576390	ENST00000403716		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000576390	ENST00000234115		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000576390	ENST00000439822		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000576390	ENST00000487980		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000576390	ENST00000438882		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000576390	ENST00000538982		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000576390	ENST00000409612		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000576390	ENST00000409279		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000439918	ENST00000404460		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000439918	ENST00000303908		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000439918	ENST00000409158		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000439918	ENST00000403716		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000439918	ENST00000234115		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000439918	ENST00000439822		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000439918	ENST00000487980		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000439918	ENST00000438882		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000439918	ENST00000538982		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000439918	ENST00000409612		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000439918	ENST00000409279		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000472244	ENST00000404460		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000472244	ENST00000303908		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000472244	ENST00000409158		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000472244	ENST00000403716		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000472244	ENST00000234115		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000472244	ENST00000439822		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000472244	ENST00000487980		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000472244	ENST00000438882		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-intron	ENST00000472244	ENST00000538982		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000472244	ENST00000409612		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000472244	ENST00000409279		ChiTaRS3.1			DC413827	P4HB	chr17	79817205	-	PLEKHB2	chr2	131905344	+
intron-3UTR	ENST00000367142	ENST00000269967		ChiTaRS3.1			BE561339	NUCKS1	chr1	205719196	-	CCDC97	chr19	41829181	+
intron-3UTR	ENST00000464938	ENST00000269967		ChiTaRS3.1			BE561339	NUCKS1	chr1	205719196	-	CCDC97	chr19	41829181	+
intron-3CDS	ENST00000537971	ENST00000587758		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000588426		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000356783		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000291901		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000536926		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000588981		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000587465		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000537971	ENST00000585321		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-5UTR	ENST00000537971	ENST00000592920		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000587758		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000588426		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000356783		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000291901		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000536926		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000588981		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000587465		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000011898	ENST00000585321		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-5UTR	ENST00000011898	ENST00000592920		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000587758		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000588426		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000356783		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000291901		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000536926		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000588981		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000587465		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000407263	ENST00000585321		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-5UTR	ENST00000407263	ENST00000592920		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000587758		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000588426		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000356783		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000291901		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000536926		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000588981		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000587465		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000492305	ENST00000585321		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-5UTR	ENST00000492305	ENST00000592920		ChiTaRS3.1			AA195942	TSPAN9	chr12	3320844	+	TNNT1	chr19	55649415	+
intron-3CDS	ENST00000300584	ENST00000371399		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000072644		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000539954		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000300584	ENST00000469457		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000371399		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000072644		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000539954		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000409931	ENST00000469457		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000371399		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000072644		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000539954		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000492078	ENST00000469457		ChiTaRS3.1			BC094812	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
5CDS-intron	ENST00000380516	ENST00000510325		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5CDS-intron	ENST00000380516	ENST00000359359		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5CDS-5UTR	ENST00000380516	ENST00000480824		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5CDS-intron	ENST00000380516	ENST00000355190		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5CDS-intron	ENST00000380516	ENST00000373685		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000536328	ENST00000510325		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000536328	ENST00000359359		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-5UTR	ENST00000536328	ENST00000480824		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000536328	ENST00000355190		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000536328	ENST00000373685		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000557950	ENST00000510325		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000557950	ENST00000359359		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-5UTR	ENST00000557950	ENST00000480824		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000557950	ENST00000355190		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
5UTR-intron	ENST00000557950	ENST00000373685		ChiTaRS3.1			DB216780	SLTM	chr15	59225602	-	C6orf89	chr6	36862276	+
intron-3UTR	ENST00000216181	ENST00000263645		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000216181	ENST00000492627		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000216181	ENST00000381036		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000216181	ENST00000526072		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000216181	ENST00000524805		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000216181	ENST00000481687		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-3UTR	ENST00000475726	ENST00000263645		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000475726	ENST00000492627		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000475726	ENST00000381036		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000475726	ENST00000526072		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000475726	ENST00000524805		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000475726	ENST00000481687		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-3UTR	ENST00000401701	ENST00000263645		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000401701	ENST00000492627		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000401701	ENST00000381036		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000401701	ENST00000526072		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000401701	ENST00000524805		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
intron-intron	ENST00000401701	ENST00000481687		ChiTaRS3.1			CN400362	MYH9	chr22	36695020	-	CD81	chr11	2418570	+
5CDS-3UTR	ENST00000297268	ENST00000382298		ChiTaRS3.1			AA417817	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
5CDS-3UTR	ENST00000297268	ENST00000402364		ChiTaRS3.1			AA417817	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
5CDS-3UTR	ENST00000297268	ENST00000382292		ChiTaRS3.1			AA417817	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
5CDS-intron	ENST00000297268	ENST00000476776		ChiTaRS3.1			AA417817	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
intron-3CDS	ENST00000504734	ENST00000514921		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000504734	ENST00000274897		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000504734	ENST00000370877		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000504734	ENST00000509997		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000504734	ENST00000370876		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000504734	ENST00000511744		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000504734	ENST00000358276		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000504734	ENST00000502396		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000415618	ENST00000514921		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000415618	ENST00000274897		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000415618	ENST00000370877		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000415618	ENST00000509997		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000415618	ENST00000370876		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000415618	ENST00000511744		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000415618	ENST00000358276		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000415618	ENST00000502396		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3CDS	ENST00000452673	ENST00000514921		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3CDS	ENST00000452673	ENST00000274897		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-intron	ENST00000452673	ENST00000370877		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-intron	ENST00000452673	ENST00000509997		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-intron	ENST00000452673	ENST00000370876		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3UTR	ENST00000452673	ENST00000511744		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3UTR	ENST00000452673	ENST00000358276		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3UTR	ENST00000452673	ENST00000502396		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3CDS	ENST00000247461	ENST00000514921		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3CDS	ENST00000247461	ENST00000274897		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-intron	ENST00000247461	ENST00000370877		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-intron	ENST00000247461	ENST00000509997		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-intron	ENST00000247461	ENST00000370876		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3UTR	ENST00000247461	ENST00000511744		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3UTR	ENST00000247461	ENST00000358276		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
3UTR-3UTR	ENST00000247461	ENST00000502396		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000512607	ENST00000514921		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000512607	ENST00000274897		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000512607	ENST00000370877		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000512607	ENST00000509997		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000512607	ENST00000370876		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000512607	ENST00000511744		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000512607	ENST00000358276		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000512607	ENST00000502396		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000503126	ENST00000514921		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000503126	ENST00000274897		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000503126	ENST00000370877		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000503126	ENST00000509997		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-intron	ENST00000503126	ENST00000370876		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000503126	ENST00000511744		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000503126	ENST00000358276		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3UTR	ENST00000503126	ENST00000502396		ChiTaRS3.1			N44604	CANX	chr5	179156344	+	MLIP	chr6	53986265	+
intron-3CDS	ENST00000538442	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000538442	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000538442	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000399150	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000399150	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000399150	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000252229	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000252229	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000252229	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000427115	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000427115	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000427115	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000442104	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000442104	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000442104	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000451603	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000451603	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000451603	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000546706	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000546706	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000546706	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000438954	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000438954	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000438954	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000458032	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000458032	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000458032	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000551950	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000551950	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000551950	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000437651	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000437651	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000437651	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000383514	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000383514	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000383514	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000551608	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000551608	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000551608	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000436531	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000436531	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000436531	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000436655	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000436655	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000436655	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000547574	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000547574	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000547574	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000400313	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000400313	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000400313	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000428416	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000428416	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000428416	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000549014	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000549014	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000549014	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000428059	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000428059	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000428059	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000451789	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000451789	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000451789	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000443156	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000443156	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000443156	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3CDS	ENST00000551960	ENST00000216146		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000551960	ENST00000465618		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-5UTR	ENST00000551960	ENST00000401609		ChiTaRS3.1			CV360980	MICB	chr6	2594912	-	RPL3	chr22	39711466	-
intron-3UTR	ENST00000471694	ENST00000381086		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-3UTR	ENST00000471694	ENST00000275521		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-intron	ENST00000471694	ENST00000381083		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-intron	ENST00000471694	ENST00000465642		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-3UTR	ENST00000355354	ENST00000381086		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-3UTR	ENST00000355354	ENST00000275521		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-intron	ENST00000355354	ENST00000381083		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-intron	ENST00000355354	ENST00000465642		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-3UTR	ENST00000361309	ENST00000381086		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-3UTR	ENST00000361309	ENST00000275521		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-intron	ENST00000361309	ENST00000381083		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-intron	ENST00000361309	ENST00000465642		ChiTaRS3.1			AI167998	CD47	chr3	107777279	+	IGFBP3	chr7	45953172	+
intron-3CDS	ENST00000297613	ENST00000301071		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-3CDS	ENST00000297613	ENST00000295766		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-3CDS	ENST00000297613	ENST00000550767		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-intron	ENST00000297613	ENST00000546918		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-3CDS	ENST00000378959	ENST00000301071		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-3CDS	ENST00000378959	ENST00000295766		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-3CDS	ENST00000378959	ENST00000550767		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-intron	ENST00000378959	ENST00000546918		ChiTaRS3.1			AI816547	RPP25L	chr9	34610821	+	TUBA1A	chr12	49579057	+
intron-intron	ENST00000537344	ENST00000262291		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000537344	ENST00000537567		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000537344	ENST00000539763		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000537344	ENST00000536180		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000537344	ENST00000545362		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000537344	ENST00000588617		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000256194	ENST00000262291		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000256194	ENST00000537567		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000256194	ENST00000539763		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000256194	ENST00000536180		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000256194	ENST00000545362		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000256194	ENST00000588617		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527546	ENST00000262291		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527546	ENST00000537567		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527546	ENST00000539763		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527546	ENST00000536180		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527546	ENST00000545362		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527546	ENST00000588617		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000342902	ENST00000262291		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000342902	ENST00000537567		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000342902	ENST00000539763		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000342902	ENST00000536180		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000342902	ENST00000545362		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000342902	ENST00000588617		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000379612	ENST00000262291		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000379612	ENST00000537567		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000379612	ENST00000539763		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000379612	ENST00000536180		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000379612	ENST00000545362		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000379612	ENST00000588617		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527195	ENST00000262291		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527195	ENST00000537567		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527195	ENST00000539763		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527195	ENST00000536180		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527195	ENST00000545362		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-intron	ENST00000527195	ENST00000588617		ChiTaRS3.1			AA601529	MICAL2	chr11	12241011	-	VMP1	chr17	57916409	-
intron-5UTR	ENST00000316292	ENST00000546591		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000316292	ENST00000501597		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000316292	ENST00000552314		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-5UTR	ENST00000491404	ENST00000546591		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000491404	ENST00000501597		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000491404	ENST00000552314		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-5UTR	ENST00000309268	ENST00000546591		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000309268	ENST00000501597		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000309268	ENST00000552314		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-5UTR	ENST00000331523	ENST00000546591		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000331523	ENST00000501597		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
intron-intron	ENST00000331523	ENST00000552314		ChiTaRS3.1			AA316930	EEF1A1	chr6	74229680	-	RPL41	chr12	56510527	+
Frame-shit	ENST00000394196	ENST00000579534		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000394196	ENST00000406285		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000394196	ENST00000579434		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000394196	ENST00000217800		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000394196	ENST00000582366		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000557381	ENST00000579534		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000557381	ENST00000406285		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000557381	ENST00000579434		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000557381	ENST00000217800		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000557381	ENST00000582366		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000420239	ENST00000579534		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000420239	ENST00000406285		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000420239	ENST00000579434		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000420239	ENST00000217800		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000420239	ENST00000582366		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-3CDS	ENST00000536619	ENST00000579534		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-3CDS	ENST00000536619	ENST00000406285		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000536619	ENST00000579434		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000536619	ENST00000217800		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000536619	ENST00000582366		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-3CDS	ENST00000554122	ENST00000579534		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-3CDS	ENST00000554122	ENST00000406285		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-intron	ENST00000554122	ENST00000579434		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-intron	ENST00000554122	ENST00000217800		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-intron	ENST00000554122	ENST00000582366		ChiTaRS3.1			BC142730	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-3UTR	ENST00000276603	ENST00000228506		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000412616		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000535413		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3UTR	ENST00000276602	ENST00000228506		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000412616		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000535413		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000520783	ENST00000228506		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000412616		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000535413		ChiTaRS3.1			AI632281	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000355624	ENST00000444518		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-intron	ENST00000355624	ENST00000466438		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000355624	ENST00000216106		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000369199	ENST00000444518		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-intron	ENST00000369199	ENST00000466438		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000369199	ENST00000216106		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000476207	ENST00000444518		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-intron	ENST00000476207	ENST00000466438		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000476207	ENST00000216106		ChiTaRS3.1			BM979584	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000337288	ENST00000399878		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-3UTR	ENST00000337288	ENST00000264868		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-intron	ENST00000337288	ENST00000502949		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-intron	ENST00000337288	ENST00000513364		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-3UTR	ENST00000462501	ENST00000399878		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-3UTR	ENST00000462501	ENST00000264868		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-intron	ENST00000462501	ENST00000502949		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-intron	ENST00000462501	ENST00000513364		ChiTaRS3.1			BI765503	STARD7	chr2	96850861	-	SEL1L3	chr4	25749118	-
intron-3UTR	ENST00000285398	ENST00000248450		ChiTaRS3.1			BI859150	ERCC3	chr2	128014954	-	AAMP	chr2	219128967	-
intron-3UTR	ENST00000285398	ENST00000444053		ChiTaRS3.1			BI859150	ERCC3	chr2	128014954	-	AAMP	chr2	219128967	-
intron-3UTR	ENST00000285398	ENST00000420660		ChiTaRS3.1			BI859150	ERCC3	chr2	128014954	-	AAMP	chr2	219128967	-
intron-3UTR	ENST00000493187	ENST00000248450		ChiTaRS3.1			BI859150	ERCC3	chr2	128014954	-	AAMP	chr2	219128967	-
intron-3UTR	ENST00000493187	ENST00000444053		ChiTaRS3.1			BI859150	ERCC3	chr2	128014954	-	AAMP	chr2	219128967	-
intron-3UTR	ENST00000493187	ENST00000420660		ChiTaRS3.1			BI859150	ERCC3	chr2	128014954	-	AAMP	chr2	219128967	-
In-frame	ENST00000404910	ENST00000346178		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000404910	ENST00000356638		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000404910	ENST00000534779		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000404910	ENST00000540933		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000404910	ENST00000534422		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000254661	ENST00000346178		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000254661	ENST00000356638		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000254661	ENST00000534779		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000254661	ENST00000540933		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000254661	ENST00000534422		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000409726	ENST00000346178		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000409726	ENST00000356638		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000409726	ENST00000534779		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000409726	ENST00000540933		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000409726	ENST00000534422		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000403885	ENST00000346178		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000403885	ENST00000356638		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000403885	ENST00000534779		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-5UTR	ENST00000403885	ENST00000540933		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
5CDS-intron	ENST00000403885	ENST00000534422		ChiTaRS3.1			AK295899	RAMP1	chr2	238786006	+	GANAB	chr11	62407205	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15917	COL1A1	chr17	48271303	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15917	COL1A1	chr17	48271303	-	PDGFB	chr22	39631879	-
5CDS-5UTR	ENST00000237530	ENST00000425759		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000237530	ENST00000292733		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000237530	ENST00000542773		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000237530	ENST00000263205		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000237530	ENST00000406969		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000237530	ENST00000382974		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-intron	ENST00000237530	ENST00000541476		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-intron	ENST00000237530	ENST00000478831		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000373622	ENST00000425759		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000373622	ENST00000292733		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000373622	ENST00000542773		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000373622	ENST00000263205		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000373622	ENST00000406969		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-5UTR	ENST00000373622	ENST00000382974		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-intron	ENST00000373622	ENST00000541476		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
5CDS-intron	ENST00000373622	ENST00000478831		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-5UTR	ENST00000470352	ENST00000425759		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-5UTR	ENST00000470352	ENST00000292733		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-5UTR	ENST00000470352	ENST00000542773		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-5UTR	ENST00000470352	ENST00000263205		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-5UTR	ENST00000470352	ENST00000406969		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-5UTR	ENST00000470352	ENST00000382974		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-intron	ENST00000470352	ENST00000541476		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-intron	ENST00000470352	ENST00000478831		ChiTaRS3.1			CF125171	RPN2	chr20	35835842	+	MED15	chr22	20861958	+
intron-intron	ENST00000225983	ENST00000531326		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000225983	ENST00000392597		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-3UTR	ENST00000225983	ENST00000351677		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000393622	ENST00000531326		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000393622	ENST00000392597		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-3UTR	ENST00000393622	ENST00000351677		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000336057	ENST00000531326		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000336057	ENST00000392597		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-3UTR	ENST00000336057	ENST00000351677		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000586802	ENST00000531326		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-intron	ENST00000586802	ENST00000392597		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
intron-3UTR	ENST00000586802	ENST00000351677		ChiTaRS3.1			CB044121	HDAC5	chr17	42171167	-	PTPN11	chr12	112945636	+
5UTR-3CDS	ENST00000328252	ENST00000327495		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
5UTR-3CDS	ENST00000328252	ENST00000595140		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
5UTR-intron	ENST00000328252	ENST00000490592		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-3CDS	ENST00000534838	ENST00000327495		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-3CDS	ENST00000534838	ENST00000595140		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-intron	ENST00000534838	ENST00000490592		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-3CDS	ENST00000483254	ENST00000327495		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-3CDS	ENST00000483254	ENST00000595140		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-intron	ENST00000483254	ENST00000490592		ChiTaRS3.1			DA840844	PAPPA	chr9	118916383	+	PSG3	chr19	43234208	-
intron-3CDS	ENST00000222005	ENST00000462138		ChiTaRS3.1			BF002266	CDC37	chr19	10501909	+	TKT	chr3	53269069	+
intron-3CDS	ENST00000222005	ENST00000423525		ChiTaRS3.1			BF002266	CDC37	chr19	10501909	+	TKT	chr3	53269069	+
intron-intron	ENST00000222005	ENST00000461139		ChiTaRS3.1			BF002266	CDC37	chr19	10501909	+	TKT	chr3	53269069	+
intron-intron	ENST00000222005	ENST00000423516		ChiTaRS3.1			BF002266	CDC37	chr19	10501909	+	TKT	chr3	53269069	+
intron-intron	ENST00000222005	ENST00000296289		ChiTaRS3.1			BF002266	CDC37	chr19	10501909	+	TKT	chr3	53269069	+
3UTR-3UTR	ENST00000374358	ENST00000374358		ChiTaRS3.1			C75391	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
3UTR-intron	ENST00000374358	ENST00000480937		ChiTaRS3.1			C75391	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-3UTR	ENST00000480937	ENST00000374358		ChiTaRS3.1			C75391	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-intron	ENST00000480937	ENST00000480937		ChiTaRS3.1			C75391	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA735996	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000409652	ENST00000529639		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
3UTR-3CDS	ENST00000409652	ENST00000531743		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
3UTR-3CDS	ENST00000409652	ENST00000525297		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
3UTR-3CDS	ENST00000409652	ENST00000527548		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
3UTR-3CDS	ENST00000409652	ENST00000279259		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
3UTR-3CDS	ENST00000409652	ENST00000529259		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
3UTR-3CDS	ENST00000409652	ENST00000434372		ChiTaRS3.1			BG251227	APOL6	chr22	36058447	-	FAU	chr11	64889283	-
intron-intron	ENST00000536769	ENST00000275364		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536769	ENST00000544127		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536769	ENST00000491117		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536769	ENST00000407904		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536769	ENST00000407653		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536769	ENST00000396960		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000538617	ENST00000275364		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000538617	ENST00000544127		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000538617	ENST00000491117		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000538617	ENST00000407904		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000538617	ENST00000407653		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000538617	ENST00000396960		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000546120	ENST00000275364		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000546120	ENST00000544127		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000546120	ENST00000491117		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000546120	ENST00000407904		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000546120	ENST00000407653		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000546120	ENST00000396960		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000339647	ENST00000275364		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000339647	ENST00000544127		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000339647	ENST00000491117		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000339647	ENST00000407904		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000339647	ENST00000407653		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000339647	ENST00000396960		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536661	ENST00000275364		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536661	ENST00000544127		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536661	ENST00000491117		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536661	ENST00000407904		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536661	ENST00000407653		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
intron-intron	ENST00000536661	ENST00000396960		ChiTaRS3.1			BE883493	UBC	chr12	125397847	-	GNA12	chr7	2827114	-
In-frame	ENST00000361804	ENST00000421182		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
In-frame	ENST00000361804	ENST00000357867		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
In-frame	ENST00000361804	ENST00000323926		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
In-frame	ENST00000361804	ENST00000336916		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
In-frame	ENST00000361804	ENST00000354785		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000357009		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000346544		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000345488		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000359671		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000446046		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000443816		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000432072		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-3UTR	ENST00000361804	ENST00000356005		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-intron	ENST00000361804	ENST00000490833		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
5CDS-intron	ENST00000361804	ENST00000426059		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3CDS	ENST00000462899	ENST00000421182		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3CDS	ENST00000462899	ENST00000357867		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3CDS	ENST00000462899	ENST00000323926		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3CDS	ENST00000462899	ENST00000336916		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3CDS	ENST00000462899	ENST00000354785		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000357009		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000346544		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000345488		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000359671		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000446046		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000443816		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000432072		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-3UTR	ENST00000462899	ENST00000356005		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-intron	ENST00000462899	ENST00000490833		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
3UTR-intron	ENST00000462899	ENST00000426059		ChiTaRS3.1			CN391691	SMC3	chr10	112328772	+	FN1	chr2	216230354	-
In-frame	ENST00000422447	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000288828		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000401525		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000404704		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000485854		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000382384		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000484262		ChiTaRS3.1			BM044090	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3UTR	ENST00000389462	ENST00000369951		ChiTaRS3.1			BM688133	PTMS	chr12	6879811	+	OPN1LW	chrX	153424440	+
intron-intron	ENST00000389462	ENST00000463296		ChiTaRS3.1			BM688133	PTMS	chr12	6879811	+	OPN1LW	chrX	153424440	+
3UTR-3UTR	ENST00000309083	ENST00000369951		ChiTaRS3.1			BM688133	PTMS	chr12	6879811	+	OPN1LW	chrX	153424440	+
3UTR-intron	ENST00000309083	ENST00000463296		ChiTaRS3.1			BM688133	PTMS	chr12	6879811	+	OPN1LW	chrX	153424440	+
3UTR-3UTR	ENST00000538057	ENST00000369951		ChiTaRS3.1			BM688133	PTMS	chr12	6879811	+	OPN1LW	chrX	153424440	+
3UTR-intron	ENST00000538057	ENST00000463296		ChiTaRS3.1			BM688133	PTMS	chr12	6879811	+	OPN1LW	chrX	153424440	+
5CDS-3UTR	ENST00000239938	ENST00000543566		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-3UTR	ENST00000239938	ENST00000315580		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-intron	ENST00000239938	ENST00000392435		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-intron	ENST00000239938	ENST00000426960		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-3UTR	ENST00000239938	ENST00000453766		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-3UTR	ENST00000239938	ENST00000454885		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-3UTR	ENST00000239938	ENST00000412505		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-intron	ENST00000239938	ENST00000439686		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-intron	ENST00000239938	ENST00000357866		ChiTaRS3.1			AU185680	EGR1	chr5	137803524	+	ARL6IP4	chr12	123467386	+
5CDS-5UTR	ENST00000230050	ENST00000374399		ChiTaRS3.1			AI394068	RPS12	chr6	133138642	-	NIPAL3	chr1	24745955	-
5CDS-5UTR	ENST00000230050	ENST00000003912		ChiTaRS3.1			AI394068	RPS12	chr6	133138642	-	NIPAL3	chr1	24745955	-
5CDS-5UTR	ENST00000230050	ENST00000358028		ChiTaRS3.1			AI394068	RPS12	chr6	133138642	-	NIPAL3	chr1	24745955	-
5CDS-5UTR	ENST00000230050	ENST00000339255		ChiTaRS3.1			AI394068	RPS12	chr6	133138642	-	NIPAL3	chr1	24745955	-
5CDS-intron	ENST00000230050	ENST00000428131		ChiTaRS3.1			AI394068	RPS12	chr6	133138642	-	NIPAL3	chr1	24745955	-
5CDS-3UTR	ENST00000230050	ENST00000488155		ChiTaRS3.1			AI394068	RPS12	chr6	133138642	-	NIPAL3	chr1	24745955	-
intron-3CDS	ENST00000466266	ENST00000290378		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000466266	ENST00000557860		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000428286	ENST00000290378		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000428286	ENST00000557860		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000376718	ENST00000290378		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000376718	ENST00000557860		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000443509	ENST00000290378		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000443509	ENST00000557860		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000223609	ENST00000290378		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000223609	ENST00000557860		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-3CDS	ENST00000376713	ENST00000290378		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-intron	ENST00000376713	ENST00000557860		ChiTaRS3.1			AA328550	PRUNE2	chr9	79229480	-	ACTC1	chr15	35082704	-
intron-5UTR	ENST00000332830	ENST00000474820		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000332830	ENST00000348849		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000332830	ENST00000409075		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000332830	ENST00000409289		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000332830	ENST00000392753		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000332830	ENST00000409972		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-5UTR	ENST00000577226	ENST00000474820		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000577226	ENST00000348849		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000577226	ENST00000409075		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000577226	ENST00000409289		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000577226	ENST00000392753		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000577226	ENST00000409972		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-5UTR	ENST00000268756	ENST00000474820		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000268756	ENST00000348849		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000268756	ENST00000409075		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000268756	ENST00000409289		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000268756	ENST00000392753		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000268756	ENST00000409972		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-5UTR	ENST00000582655	ENST00000474820		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000582655	ENST00000348849		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000582655	ENST00000409075		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000582655	ENST00000409289		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000582655	ENST00000392753		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
intron-3UTR	ENST00000582655	ENST00000409972		ChiTaRS3.1			CN399833	PHF12	chr17	27251420	-	RBMS1	chr2	161131242	-
In-frame	ENST00000246533	ENST00000348520		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000380038		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000389744		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000557575		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000553286		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000347839		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000555836		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000334553		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000246489		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000557450		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000554280		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000452929		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000246533	ENST00000445352		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
In-frame	ENST00000589146	ENST00000348520		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000380038		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000389744		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000557575		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000553286		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000347839		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000555836		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000334553		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000246489		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000557450		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000554280		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000452929		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000589146	ENST00000445352		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
Frame-shit	ENST00000587718	ENST00000348520		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000380038		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000389744		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000557575		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000553286		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000347839		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000555836		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000334553		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000246489		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000557450		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000554280		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000452929		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000587718	ENST00000445352		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
In-frame	ENST00000590874	ENST00000348520		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000380038		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000389744		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000557575		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000553286		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000347839		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000555836		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000334553		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000246489		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000557450		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000554280		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000452929		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000590874	ENST00000445352		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
In-frame	ENST00000588815	ENST00000348520		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000380038		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000389744		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000557575		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000553286		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000347839		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000555836		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000334553		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000246489		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000557450		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000554280		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000452929		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588815	ENST00000445352		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
In-frame	ENST00000588780	ENST00000348520		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000380038		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000389744		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000557575		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000553286		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000347839		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000555836		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000334553		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000246489		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000557450		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000554280		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000452929		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-intron	ENST00000588780	ENST00000445352		ChiTaRS3.1			BF082024	CAPNS1	chr19	36640524	+	KLC1	chr14	104145849	+
5CDS-3UTR	ENST00000261313	ENST00000259241		ChiTaRS3.1			BQ375227	PEBP1	chr12	118577336	+	HS6ST1	chr2	129024269	-
5CDS-intron	ENST00000261313	ENST00000494089		ChiTaRS3.1			BQ375227	PEBP1	chr12	118577336	+	HS6ST1	chr2	129024269	-
3UTR-3UTR	ENST00000542939	ENST00000259241		ChiTaRS3.1			BQ375227	PEBP1	chr12	118577336	+	HS6ST1	chr2	129024269	-
3UTR-intron	ENST00000542939	ENST00000494089		ChiTaRS3.1			BQ375227	PEBP1	chr12	118577336	+	HS6ST1	chr2	129024269	-
intron-5UTR	ENST00000376542	ENST00000297338		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000376542	ENST00000523986		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000376542	ENST00000517749		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000376542	ENST00000518055		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000376542	ENST00000523547		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-5UTR	ENST00000339157	ENST00000297338		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000339157	ENST00000523986		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000339157	ENST00000517749		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000339157	ENST00000518055		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000339157	ENST00000523547		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-5UTR	ENST00000481556	ENST00000297338		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000481556	ENST00000523986		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000481556	ENST00000517749		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000481556	ENST00000518055		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
intron-intron	ENST00000481556	ENST00000523547		ChiTaRS3.1			BG900137	ABHD12	chr20	25280910	-	RAD21	chr8	117886890	-
5CDS-3UTR	ENST00000373382	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000373382	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000373382	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000373382	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000373382	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000263559	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000263559	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000263559	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000263559	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000263559	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000395098	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000395098	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000395098	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000395098	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000395098	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000546041	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000546041	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000546041	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000546041	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000546041	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
3UTR-3UTR	ENST00000490696	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
3UTR-3UTR	ENST00000490696	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
3UTR-intron	ENST00000490696	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
3UTR-intron	ENST00000490696	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
3UTR-intron	ENST00000490696	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000541711	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000541711	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000541711	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000541711	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000541711	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000489794	ENST00000308448		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-3UTR	ENST00000489794	ENST00000328142		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000489794	ENST00000400215		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000489794	ENST00000541004		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
5CDS-intron	ENST00000489794	ENST00000495903		ChiTaRS3.1			DA031295	VPS26A	chr10	70916890	+	ATAD1	chr10	89513306	-
intron-intron	ENST00000393958	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393958	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393958	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393960	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393960	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393960	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000355677	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000355677	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000355677	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000524491	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000524491	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000524491	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000529047	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000529047	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000529047	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393955	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393955	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000393955	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000528224	ENST00000474210		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000528224	ENST00000394231		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-intron	ENST00000528224	ENST00000577810		ChiTaRS3.1			BF894585	PC	chr11	66633761	-	MIEN1	chr17	37886518	-
intron-3UTR	ENST00000335295	ENST00000395905		ChiTaRS3.1			AJ710574	HBB	chr11	5246903	-	LRRC2	chr3	46558752	-
intron-intron	ENST00000335295	ENST00000296144		ChiTaRS3.1			AJ710574	HBB	chr11	5246903	-	LRRC2	chr3	46558752	-
intron-intron	ENST00000335295	ENST00000496388		ChiTaRS3.1			AJ710574	HBB	chr11	5246903	-	LRRC2	chr3	46558752	-
3UTR-3CDS	ENST00000237380	ENST00000253462		ChiTaRS3.1			BE907417	MED28	chr4	17625565	+	GINS2	chr16	85722480	-
intron-3CDS	ENST00000499786	ENST00000253462		ChiTaRS3.1			BE907417	MED28	chr4	17625565	+	GINS2	chr16	85722480	-
intron-3CDS	ENST00000483612	ENST00000298892		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000483612	ENST00000395805		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000483612	ENST00000251071		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000483612	ENST00000308433		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-intron	ENST00000483612	ENST00000417045		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-intron	ENST00000483612	ENST00000538387		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3CDS	ENST00000292401	ENST00000298892		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000292401	ENST00000395805		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000292401	ENST00000251071		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000292401	ENST00000308433		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-intron	ENST00000292401	ENST00000417045		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-intron	ENST00000292401	ENST00000538387		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3CDS	ENST00000411734	ENST00000298892		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000411734	ENST00000395805		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000411734	ENST00000251071		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3UTR	ENST00000411734	ENST00000308433		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-intron	ENST00000411734	ENST00000417045		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-intron	ENST00000411734	ENST00000538387		ChiTaRS3.1			AX795406	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863267	-
intron-3CDS	ENST00000368089	ENST00000394003		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000368089	ENST00000361874		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000368089	ENST00000407639		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000368089	ENST00000409438		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000368089	ENST00000409240		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000368089	ENST00000409868		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000368089	ENST00000409567		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-5UTR	ENST00000368089	ENST00000495643		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000394003		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000361874		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000407639		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000409438		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000409240		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000409868		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000509700	ENST00000409567		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-5UTR	ENST00000509700	ENST00000495643		ChiTaRS3.1			DA064572	KCNJ10	chr1	160011953	-	DCTN1	chr2	74594914	-
intron-3CDS	ENST00000576409	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000576409	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000576409	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000574428	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000574428	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000574428	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000371937	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000371937	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000371937	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000542495	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000542495	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000542495	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000329231	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000329231	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000329231	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000532925	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000532925	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000532925	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000525633	ENST00000221957		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000525633	ENST00000592528		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-3CDS	ENST00000525633	ENST00000585479		ChiTaRS3.1			CN418162	ATPAF1	chr1	47119503	-	PLIN3	chr19	4847827	-
intron-intron	ENST00000409185	ENST00000523767		ChiTaRS3.1			BU631743	FAM168B	chr2	131810549	+	NDST1	chr5	149937419	-
intron-3UTR	ENST00000409185	ENST00000261797		ChiTaRS3.1			BU631743	FAM168B	chr2	131810549	+	NDST1	chr5	149937419	-
intron-intron	ENST00000409185	ENST00000521752		ChiTaRS3.1			BU631743	FAM168B	chr2	131810549	+	NDST1	chr5	149937419	-
intron-intron	ENST00000389915	ENST00000523767		ChiTaRS3.1			BU631743	FAM168B	chr2	131810549	+	NDST1	chr5	149937419	-
intron-3UTR	ENST00000389915	ENST00000261797		ChiTaRS3.1			BU631743	FAM168B	chr2	131810549	+	NDST1	chr5	149937419	-
intron-intron	ENST00000389915	ENST00000521752		ChiTaRS3.1			BU631743	FAM168B	chr2	131810549	+	NDST1	chr5	149937419	-
intron-3UTR	ENST00000546088	ENST00000588757		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000546088	ENST00000420359		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000546088	ENST00000449624		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000546088	ENST00000421097		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000546088	ENST00000590958		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-intron	ENST00000546088	ENST00000393818		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-3UTR	ENST00000448108	ENST00000588757		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000448108	ENST00000420359		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000448108	ENST00000449624		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000448108	ENST00000421097		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-5UTR	ENST00000448108	ENST00000590958		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
intron-intron	ENST00000448108	ENST00000393818		ChiTaRS3.1			DC383781	TAF1D	chr11	93465527	-	COASY	chr17	40714169	+
In-frame	ENST00000308508	ENST00000356577		ChiTaRS3.1			CD172355	CSPG4	chr15	75977076	-	SON	chr21	34945612	+
In-frame	ENST00000308508	ENST00000290239		ChiTaRS3.1			CD172355	CSPG4	chr15	75977076	-	SON	chr21	34945612	+
In-frame	ENST00000308508	ENST00000381692		ChiTaRS3.1			CD172355	CSPG4	chr15	75977076	-	SON	chr21	34945612	+
5CDS-intron	ENST00000308508	ENST00000300278		ChiTaRS3.1			CD172355	CSPG4	chr15	75977076	-	SON	chr21	34945612	+
5CDS-intron	ENST00000308508	ENST00000381679		ChiTaRS3.1			CD172355	CSPG4	chr15	75977076	-	SON	chr21	34945612	+
5CDS-3UTR	ENST00000308508	ENST00000470533		ChiTaRS3.1			CD172355	CSPG4	chr15	75977076	-	SON	chr21	34945612	+
3UTR-3CDS	ENST00000511181	ENST00000278412		ChiTaRS3.1			AA253363	HEXB	chr5	74017013	-	SSRP1	chr11	57095812	+
3UTR-3CDS	ENST00000261416	ENST00000278412		ChiTaRS3.1			AA253363	HEXB	chr5	74017013	-	SSRP1	chr11	57095812	+
3UTR-3CDS	ENST00000513539	ENST00000278412		ChiTaRS3.1			AA253363	HEXB	chr5	74017013	-	SSRP1	chr11	57095812	+
3UTR-3CDS	ENST00000509579	ENST00000278412		ChiTaRS3.1			AA253363	HEXB	chr5	74017013	-	SSRP1	chr11	57095812	+
intron-3CDS	ENST00000491306	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000491306	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000600880	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000600880	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000446558	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000446558	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000456586	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000456586	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
5UTR-3CDS	ENST00000598925	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
5UTR-3CDS	ENST00000598925	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
5UTR-3CDS	ENST00000427280	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
5UTR-3CDS	ENST00000427280	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000441179	ENST00000407418		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
intron-3CDS	ENST00000441179	ENST00000216083		ChiTaRS3.1			AW246883	RPL37A	chr2	217363991	-	CBX6	chr22	39262273	+
3UTR-3UTR	ENST00000344096	ENST00000344096		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000393555		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000537632		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000393555	ENST00000344096		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000393555		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000537632		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000537632	ENST00000344096		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000393555		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000537632		ChiTaRS3.1			C15558	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3CDS	ENST00000314167	ENST00000335221		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000314167	ENST00000321892		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000314167	ENST00000306378		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000314167	ENST00000424123		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3UTR	ENST00000314167	ENST00000577770		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000511163	ENST00000335221		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000511163	ENST00000321892		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000511163	ENST00000306378		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000511163	ENST00000424123		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3UTR	ENST00000511163	ENST00000577770		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000509566	ENST00000335221		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000509566	ENST00000321892		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000509566	ENST00000306378		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3CDS	ENST00000509566	ENST00000424123		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
intron-3UTR	ENST00000509566	ENST00000577770		ChiTaRS3.1			AK309413	GAK	chr4	860912	-	BPTF	chr17	65940363	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			S72478	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			S72478	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			S72478	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			S72478	BCR	chr22	23632602	+	ABL1	chr9	133730188	+
Frame-shit	ENST00000425967	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000425967	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000425967	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000425967	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397091	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397091	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397091	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397091	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000447712	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000447712	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000447712	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000447712	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000341462	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000341462	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000341462	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000341462	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000532791	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000532791	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000532791	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000532791	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397113	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397113	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397113	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397113	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000356207	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000356207	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000356207	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000356207	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000335922	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000335922	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000335922	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000335922	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000326324	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000326324	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000326324	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000326324	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397103	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397103	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397103	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397103	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000397108	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000397108	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397108	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397108	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-3CDS	ENST00000496629	ENST00000305877		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-3CDS	ENST00000496629	ENST00000359540		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-intron	ENST00000496629	ENST00000398512		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-intron	ENST00000496629	ENST00000436990		ChiTaRS3.1			AJ298917	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-3CDS	ENST00000390548	ENST00000389916		ChiTaRS3.1			DB301841	IGHG1	chr22	22841549	-	KIF19	chr17	72322352	+
3UTR-3UTR	ENST00000340857	ENST00000302312		ChiTaRS3.1			C02481	H1F0	chr22	38202893	+	AHSP	chr16	31540014	+
3UTR-3UTR	ENST00000340857	ENST00000569954		ChiTaRS3.1			C02481	H1F0	chr22	38202893	+	AHSP	chr16	31540014	+
intron-3CDS	ENST00000390548	ENST00000358161		ChiTaRS3.1			BF871876	IGHG1	chr14	106173756	-	SPTAN1	chr9	131339100	+
intron-3CDS	ENST00000390548	ENST00000372739		ChiTaRS3.1			BF871876	IGHG1	chr14	106173756	-	SPTAN1	chr9	131339100	+
intron-3CDS	ENST00000390548	ENST00000372731		ChiTaRS3.1			BF871876	IGHG1	chr14	106173756	-	SPTAN1	chr9	131339100	+
intron-intron	ENST00000390548	ENST00000475367		ChiTaRS3.1			BF871876	IGHG1	chr14	106173756	-	SPTAN1	chr9	131339100	+
5UTR-3CDS	ENST00000297142	ENST00000370689		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3CDS	ENST00000297142	ENST00000370685		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3CDS	ENST00000297142	ENST00000394838		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3CDS	ENST00000297142	ENST00000370682		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3CDS	ENST00000297142	ENST00000394839		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3CDS	ENST00000297142	ENST00000370688		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3UTR	ENST00000297142	ENST00000470673		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
5UTR-3UTR	ENST00000297142	ENST00000370680		ChiTaRS3.1			DA775505	NEUROD6	chr7	31380207	-	PRKACB	chr1	84644858	+
intron-intron	ENST00000286953	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000286953	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000286953	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000554880	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000554880	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000554880	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000555030	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000555030	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000555030	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000414262	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000414262	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000414262	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000553430	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000553430	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000553430	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
5CDS-intron	ENST00000557040	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
5CDS-intron	ENST00000557040	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
5CDS-intron	ENST00000557040	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
5CDS-intron	ENST00000553449	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
5CDS-intron	ENST00000553449	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
5CDS-intron	ENST00000553449	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000554713	ENST00000519049		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000554713	ENST00000523211		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000554713	ENST00000328472		ChiTaRS3.1			AF116639	C14orf2	chr14	104378853	-	NKAIN3	chr8	63831541	+
intron-intron	ENST00000609104	ENST00000392562		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609104	ENST00000316804		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-5UTR	ENST00000609104	ENST00000316615		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609104	ENST00000392563		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609104	ENST00000392564		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609104	ENST00000578961		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609104	ENST00000462266		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000277575	ENST00000392562		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000277575	ENST00000316804		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-5UTR	ENST00000277575	ENST00000316615		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000277575	ENST00000392563		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000277575	ENST00000392564		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000277575	ENST00000578961		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000277575	ENST00000462266		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000379237	ENST00000392562		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000379237	ENST00000316804		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-5UTR	ENST00000379237	ENST00000316615		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000379237	ENST00000392563		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000379237	ENST00000392564		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000379237	ENST00000578961		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000379237	ENST00000462266		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000443016	ENST00000392562		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000443016	ENST00000316804		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-5UTR	ENST00000443016	ENST00000316615		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000443016	ENST00000392563		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000443016	ENST00000392564		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000443016	ENST00000578961		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000443016	ENST00000462266		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609853	ENST00000392562		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609853	ENST00000316804		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-5UTR	ENST00000609853	ENST00000316615		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609853	ENST00000392563		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609853	ENST00000392564		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609853	ENST00000578961		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-intron	ENST00000609853	ENST00000462266		ChiTaRS3.1			BM748827	USP6NL	chr10	11503362	-	GRB2	chr17	73401755	-
intron-3CDS	ENST00000360663	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000360663	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000360663	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000360663	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000360663	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000360663	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000360663	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394828	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394828	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394828	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394828	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394828	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394828	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000394828	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394829	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394829	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394829	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394829	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394829	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394829	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000394829	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000342558	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000342558	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000342558	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000342558	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000342558	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000342558	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000342558	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000545874	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000545874	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000545874	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000545874	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000545874	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000545874	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000545874	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394822	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394822	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394822	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394822	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394822	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000394822	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000394822	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000544628	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000544628	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000544628	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000544628	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000544628	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000544628	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000544628	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000495897	ENST00000392514		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000495897	ENST00000551150		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000495897	ENST00000552292		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000495897	ENST00000313104		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000495897	ENST00000546989		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-3CDS	ENST00000495897	ENST00000228306		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
intron-intron	ENST00000495897	ENST00000550296		ChiTaRS3.1			BG180012	PPP3CB	chr10	75230844	-	RPLP0	chr12	120634606	-
3UTR-intron	ENST00000484427	ENST00000367033		ChiTaRS3.1			DB218823	DDX27	chr20	47858635	+	PLXNA2	chr1	208331273	-
3UTR-intron	ENST00000484427	ENST00000483048		ChiTaRS3.1			DB218823	DDX27	chr20	47858635	+	PLXNA2	chr1	208331273	-
5CDS-intron	ENST00000371764	ENST00000367033		ChiTaRS3.1			DB218823	DDX27	chr20	47858635	+	PLXNA2	chr1	208331273	-
5CDS-intron	ENST00000371764	ENST00000483048		ChiTaRS3.1			DB218823	DDX27	chr20	47858635	+	PLXNA2	chr1	208331273	-
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM743318	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000465343	ENST00000341307		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-3CDS	ENST00000465343	ENST00000356000		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-intron	ENST00000465343	ENST00000538995		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-intron	ENST00000465343	ENST00000377819		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-intron	ENST00000465343	ENST00000339997		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-intron	ENST00000465343	ENST00000540798		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-intron	ENST00000465343	ENST00000537981		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
intron-intron	ENST00000465343	ENST00000354497		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
In-frame	ENST00000355095	ENST00000341307		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
In-frame	ENST00000355095	ENST00000356000		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000355095	ENST00000538995		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000355095	ENST00000377819		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000355095	ENST00000339997		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000355095	ENST00000540798		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000355095	ENST00000537981		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000355095	ENST00000354497		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
In-frame	ENST00000423484	ENST00000341307		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
In-frame	ENST00000423484	ENST00000356000		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000423484	ENST00000538995		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000423484	ENST00000377819		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000423484	ENST00000339997		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000423484	ENST00000540798		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000423484	ENST00000537981		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
5CDS-intron	ENST00000423484	ENST00000354497		ChiTaRS3.1			DA795976	ZNF736	chr7	63797360	+	RTN3	chr11	63517460	+
In-frame	ENST00000370025	ENST00000421999		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
5CDS-intron	ENST00000370025	ENST00000496116		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
5CDS-intron	ENST00000370025	ENST00000489081		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-3CDS	ENST00000370022	ENST00000421999		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-intron	ENST00000370022	ENST00000496116		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-intron	ENST00000370022	ENST00000489081		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-3CDS	ENST00000467302	ENST00000421999		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-intron	ENST00000467302	ENST00000496116		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-intron	ENST00000467302	ENST00000489081		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
In-frame	ENST00000370021	ENST00000421999		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
5CDS-intron	ENST00000370021	ENST00000496116		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
5CDS-intron	ENST00000370021	ENST00000489081		ChiTaRS3.1			BE739253	PRPF38B	chr1	109242286	+	CMSS1	chr3	99865815	+
intron-3CDS	ENST00000527073	ENST00000545074		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000527073	ENST00000540249		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000527073	ENST00000379806		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000527073	ENST00000422285		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000527073	ENST00000379805		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000527073	ENST00000379804		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000527073	ENST00000478795		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-3CDS	ENST00000525631	ENST00000545074		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000525631	ENST00000540249		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000525631	ENST00000379806		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000525631	ENST00000422285		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000525631	ENST00000379805		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000525631	ENST00000379804		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000525631	ENST00000478795		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-3CDS	ENST00000307366	ENST00000545074		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000307366	ENST00000540249		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000307366	ENST00000379806		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000307366	ENST00000422285		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000307366	ENST00000379805		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000307366	ENST00000379804		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
intron-intron	ENST00000307366	ENST00000478795		ChiTaRS3.1			AM746210	TMEM223	chr11	62559225	-	PDHA1	chrX	19372607	+
Frame-shit	ENST00000358598	ENST00000254066		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000358598	ENST00000394089		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000425707		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000394086		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000394081		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000420042		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000392711	ENST00000254066		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000392711	ENST00000394089		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000425707		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000394086		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000394081		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000420042		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000589228	ENST00000254066		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000589228	ENST00000394089		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000425707		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000394086		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000394081		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000420042		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000536854	ENST00000254066		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000536854	ENST00000394089		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000425707		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000394086		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000394081		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000420042		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000586397	ENST00000254066		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000586397	ENST00000394089		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000425707		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000394086		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000394081		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000420042		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000588188	ENST00000254066		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
Frame-shit	ENST00000588188	ENST00000394089		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000425707		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000394086		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000394081		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000420042		ChiTaRS3.1			EF428111	PRKAR1A	chr17	66511717	+	RARA	chr17	38504566	+
intron-3UTR	ENST00000301764	ENST00000534336		ChiTaRS3.1			BF995091	DDB1	chr11	61070561	-	MALAT1	chr11	65272046	+
intron-3UTR	ENST00000450997	ENST00000534336		ChiTaRS3.1			BF995091	DDB1	chr11	61070561	-	MALAT1	chr11	65272046	+
intron-3UTR	ENST00000451943	ENST00000534336		ChiTaRS3.1			BF995091	DDB1	chr11	61070561	-	MALAT1	chr11	65272046	+
intron-3UTR	ENST00000538470	ENST00000534336		ChiTaRS3.1			BF995091	DDB1	chr11	61070561	-	MALAT1	chr11	65272046	+
intron-3UTR	ENST00000545930	ENST00000534336		ChiTaRS3.1			BF995091	DDB1	chr11	61070561	-	MALAT1	chr11	65272046	+
3UTR-intron	ENST00000262134	ENST00000539054		ChiTaRS3.1			AJ420584	LPCAT2	chr16	55617581	+	TXNDC5	chr6	8014530	-
3UTR-intron	ENST00000262134	ENST00000379757		ChiTaRS3.1			AJ420584	LPCAT2	chr16	55617581	+	TXNDC5	chr6	8014530	-
3UTR-intron	ENST00000262134	ENST00000473453		ChiTaRS3.1			AJ420584	LPCAT2	chr16	55617581	+	TXNDC5	chr6	8014530	-
intron-intron	ENST00000565056	ENST00000539054		ChiTaRS3.1			AJ420584	LPCAT2	chr16	55617581	+	TXNDC5	chr6	8014530	-
intron-intron	ENST00000565056	ENST00000379757		ChiTaRS3.1			AJ420584	LPCAT2	chr16	55617581	+	TXNDC5	chr6	8014530	-
intron-intron	ENST00000565056	ENST00000473453		ChiTaRS3.1			AJ420584	LPCAT2	chr16	55617581	+	TXNDC5	chr6	8014530	-
5CDS-3UTR	ENST00000306726	ENST00000368865		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000538238		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368859		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368858		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000481952		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000564970	ENST00000368865		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000538238		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368859		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368858		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000481952		ChiTaRS3.1			BG212872	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000260402	ENST00000540235		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000260402	ENST00000393930		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000260402	ENST00000393931		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000260402	ENST00000310706		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000557821	ENST00000540235		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000557821	ENST00000393930		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000557821	ENST00000393931		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000557821	ENST00000310706		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000456256	ENST00000540235		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000456256	ENST00000393930		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000456256	ENST00000393931		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000456256	ENST00000310706		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000543785	ENST00000540235		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000543785	ENST00000393930		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000543785	ENST00000393931		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000543785	ENST00000310706		ChiTaRS3.1			BF893068	PLCB2	chr15	40584336	-	JUP	chr17	39919485	-
intron-intron	ENST00000477999	ENST00000265239		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000477999	ENST00000455191		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000477999	ENST00000453254		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000477999	ENST00000480302		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000265239		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000455191		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000453254		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000480302		ChiTaRS3.1			AX747641	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
5CDS-3UTR	ENST00000307194	ENST00000580170		ChiTaRS3.1			BG484375	GIMAP1	chr7	150417609	+	PTPRM	chr18	8406398	+
5CDS-3UTR	ENST00000307194	ENST00000332175		ChiTaRS3.1			BG484375	GIMAP1	chr7	150417609	+	PTPRM	chr18	8406398	+
5CDS-intron	ENST00000307194	ENST00000400060		ChiTaRS3.1			BG484375	GIMAP1	chr7	150417609	+	PTPRM	chr18	8406398	+
5CDS-3UTR	ENST00000307194	ENST00000400053		ChiTaRS3.1			BG484375	GIMAP1	chr7	150417609	+	PTPRM	chr18	8406398	+
5CDS-3UTR	ENST00000307194	ENST00000444013		ChiTaRS3.1			BG484375	GIMAP1	chr7	150417609	+	PTPRM	chr18	8406398	+
5CDS-intron	ENST00000307194	ENST00000578571		ChiTaRS3.1			BG484375	GIMAP1	chr7	150417609	+	PTPRM	chr18	8406398	+
intron-5UTR	ENST00000296215	ENST00000228136		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-5UTR	ENST00000296215	ENST00000422258		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-intron	ENST00000296215	ENST00000527893		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-intron	ENST00000296215	ENST00000525684		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-5UTR	ENST00000468040	ENST00000228136		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-5UTR	ENST00000468040	ENST00000422258		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-intron	ENST00000468040	ENST00000527893		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-intron	ENST00000468040	ENST00000525684		ChiTaRS3.1			EL952482	SNIP1	chr1	38011084	+	C11orf58	chr11	16760206	+
intron-intron	ENST00000557515	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000557515	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000557515	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000338631	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000338631	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000338631	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000357481	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000357481	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000357481	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000605057	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000605057	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000605057	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000457657	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000457657	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000457657	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000262710	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000262710	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000262710	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000397341	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000397341	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000397341	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000555053	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000555053	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000555053	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000555352	ENST00000304058		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000555352	ENST00000510708		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
intron-intron	ENST00000555352	ENST00000515439		ChiTaRS3.1			BE819426	ACIN1	chr14	23547417	-	DTWD2	chr5	118309483	+
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			AW798048	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-5UTR	ENST00000319359	ENST00000276449		ChiTaRS3.1			AV705820	ELL3	chr15	44085212	+	STAR	chr8	38008344	-
intron-5UTR	ENST00000497465	ENST00000276449		ChiTaRS3.1			AV705820	ELL3	chr15	44085212	+	STAR	chr8	38008344	-
3UTR-3UTR	ENST00000604411	ENST00000219481		ChiTaRS3.1			BF095515	TSIX	chrX	73047123	-	DECR2	chr16	462329	+
3UTR-intron	ENST00000604411	ENST00000397710		ChiTaRS3.1			BF095515	TSIX	chrX	73047123	-	DECR2	chr16	462329	+
3UTR-intron	ENST00000604411	ENST00000424398		ChiTaRS3.1			BF095515	TSIX	chrX	73047123	-	DECR2	chr16	462329	+
3UTR-3UTR	ENST00000604411	ENST00000461947		ChiTaRS3.1			BF095515	TSIX	chrX	73047123	-	DECR2	chr16	462329	+
intron-3UTR	ENST00000313899	ENST00000316509		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000313899	ENST00000404970		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000313899	ENST00000488857		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000313899	ENST00000481878		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-3UTR	ENST00000353341	ENST00000316509		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000353341	ENST00000404970		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000353341	ENST00000488857		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000353341	ENST00000481878		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-3UTR	ENST00000543098	ENST00000316509		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000543098	ENST00000404970		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000543098	ENST00000488857		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000543098	ENST00000481878		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-3UTR	ENST00000352301	ENST00000316509		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000352301	ENST00000404970		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000352301	ENST00000488857		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000352301	ENST00000481878		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-3UTR	ENST00000508119	ENST00000316509		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000508119	ENST00000404970		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000508119	ENST00000488857		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000508119	ENST00000481878		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-3UTR	ENST00000541060	ENST00000316509		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000541060	ENST00000404970		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000541060	ENST00000488857		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000541060	ENST00000481878		ChiTaRS3.1			BE646088	HNRNPD	chr4	83275258	+	VAMP2	chr17	8063452	+
intron-intron	ENST00000299441	ENST00000252996		ChiTaRS3.1			AI341166	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000299441	ENST00000609045		ChiTaRS3.1			AI341166	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-3CDS	ENST00000340990	ENST00000296456		ChiTaRS3.1			BF988871	ADIPOR1	chr1	202920149	-	APEH	chr3	49712711	+
intron-3CDS	ENST00000340990	ENST00000438011		ChiTaRS3.1			BF988871	ADIPOR1	chr1	202920149	-	APEH	chr3	49712711	+
intron-3CDS	ENST00000436244	ENST00000296456		ChiTaRS3.1			BF988871	ADIPOR1	chr1	202920149	-	APEH	chr3	49712711	+
intron-3CDS	ENST00000436244	ENST00000438011		ChiTaRS3.1			BF988871	ADIPOR1	chr1	202920149	-	APEH	chr3	49712711	+
intron-3CDS	ENST00000367254	ENST00000296456		ChiTaRS3.1			BF988871	ADIPOR1	chr1	202920149	-	APEH	chr3	49712711	+
intron-3CDS	ENST00000367254	ENST00000438011		ChiTaRS3.1			BF988871	ADIPOR1	chr1	202920149	-	APEH	chr3	49712711	+
intron-3UTR	ENST00000262919	ENST00000472413		ChiTaRS3.1			AI174699	ATRN	chr20	3464215	-	NPIPA1	chr16	15039500	+
intron-3UTR	ENST00000262919	ENST00000328085		ChiTaRS3.1			AI174699	ATRN	chr20	3464215	-	NPIPA1	chr16	15039500	+
intron-3UTR	ENST00000446916	ENST00000472413		ChiTaRS3.1			AI174699	ATRN	chr20	3464215	-	NPIPA1	chr16	15039500	+
intron-3UTR	ENST00000446916	ENST00000328085		ChiTaRS3.1			AI174699	ATRN	chr20	3464215	-	NPIPA1	chr16	15039500	+
Frame-shit	ENST00000535572	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000535572	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000537687	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000537687	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000315939	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000315939	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
intron-3CDS	ENST00000447667	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
intron-3CDS	ENST00000447667	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000530271	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000530271	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
intron-3CDS	ENST00000540360	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
intron-3CDS	ENST00000540360	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000340908	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
Frame-shit	ENST00000340908	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
intron-3CDS	ENST00000574564	ENST00000602402		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
intron-3CDS	ENST00000574564	ENST00000376795		ChiTaRS3.1			DA727905	WNK1	chr12	994550	+	DNAJC3	chr13	96361511	+
5CDS-5UTR	ENST00000534358	ENST00000437099		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000323816		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000432992		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000540214		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000585266		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000580865		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000534358	ENST00000583882		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000542249		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000396115		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000579158		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000534358	ENST00000578655		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000437099		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000323816		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000432992		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000540214		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000585266		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000580865		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000389506	ENST00000583882		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000542249		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000396115		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000579158		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000389506	ENST00000578655		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000437099		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000323816		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000432992		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000540214		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000585266		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000354520	ENST00000580865		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-intron	ENST00000354520	ENST00000583882		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000542249		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000396115		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000579158		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
5CDS-5UTR	ENST00000354520	ENST00000578655		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000437099		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000323816		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000432992		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000540214		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000585266		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-intron	ENST00000420751	ENST00000580865		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-intron	ENST00000420751	ENST00000583882		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000542249		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000396115		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000579158		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-5UTR	ENST00000420751	ENST00000578655		ChiTaRS3.1			AF231996	KMT2A	chr11	118355029	+	GAS7	chr17	9923216	-
3UTR-3CDS	ENST00000526767	ENST00000202773		ChiTaRS3.1			BP333196	HTN3	chr4	70902213	+	RPL6	chr12	112843119	-
3UTR-3CDS	ENST00000526767	ENST00000424576		ChiTaRS3.1			BP333196	HTN3	chr4	70902213	+	RPL6	chr12	112843119	-
intron-3CDS	ENST00000530128	ENST00000202773		ChiTaRS3.1			BP333196	HTN3	chr4	70902213	+	RPL6	chr12	112843119	-
intron-3CDS	ENST00000530128	ENST00000424576		ChiTaRS3.1			BP333196	HTN3	chr4	70902213	+	RPL6	chr12	112843119	-
3UTR-3CDS	ENST00000381057	ENST00000202773		ChiTaRS3.1			BP333196	HTN3	chr4	70902213	+	RPL6	chr12	112843119	-
3UTR-3CDS	ENST00000381057	ENST00000424576		ChiTaRS3.1			BP333196	HTN3	chr4	70902213	+	RPL6	chr12	112843119	-
5CDS-intron	ENST00000373255	ENST00000396353		ChiTaRS3.1			BI046349	H2AFY2	chr10	71855484	+	NDE1	chr16	15797771	-
5CDS-intron	ENST00000373255	ENST00000396355		ChiTaRS3.1			BI046349	H2AFY2	chr10	71855484	+	NDE1	chr16	15797771	-
5CDS-intron	ENST00000373255	ENST00000396354		ChiTaRS3.1			BI046349	H2AFY2	chr10	71855484	+	NDE1	chr16	15797771	-
5CDS-intron	ENST00000373255	ENST00000342673		ChiTaRS3.1			BI046349	H2AFY2	chr10	71855484	+	NDE1	chr16	15797771	-
5CDS-intron	ENST00000373255	ENST00000571896		ChiTaRS3.1			BI046349	H2AFY2	chr10	71855484	+	NDE1	chr16	15797771	-
5CDS-intron	ENST00000264258	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000264258	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000264258	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409000	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409000	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409000	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409028	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409028	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409028	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409320	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409320	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409320	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409733	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409733	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409733	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409650	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409650	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409650	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409038	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409038	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409038	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409711	ENST00000485162		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409711	ENST00000463408		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
5CDS-intron	ENST00000409711	ENST00000470449		ChiTaRS3.1			DB263110	RPL31	chr2	101619203	+	MYLK-AS1	chr3	123331867	-
intron-3CDS	ENST00000275227	ENST00000299213		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000275227	ENST00000560052		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000275227	ENST00000344870		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-3CDS	ENST00000538764	ENST00000299213		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000538764	ENST00000560052		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000538764	ENST00000344870		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-3CDS	ENST00000367918	ENST00000299213		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000367918	ENST00000560052		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000367918	ENST00000344870		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-3CDS	ENST00000460518	ENST00000299213		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000460518	ENST00000560052		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-intron	ENST00000460518	ENST00000344870		ChiTaRS3.1			AA488182	SLC18B1	chr6	133118140	-	LARP6	chr15	71124712	-
intron-5UTR	ENST00000340360	ENST00000308511		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000340360	ENST00000521301		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000340360	ENST00000389279		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000340360	ENST00000520861		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-5UTR	ENST00000321448	ENST00000308511		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000321448	ENST00000521301		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000321448	ENST00000389279		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000321448	ENST00000520861		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-5UTR	ENST00000527087	ENST00000308511		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000527087	ENST00000521301		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000527087	ENST00000389279		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000527087	ENST00000520861		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-5UTR	ENST00000533598	ENST00000308511		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000533598	ENST00000521301		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000533598	ENST00000389279		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
intron-intron	ENST00000533598	ENST00000520861		ChiTaRS3.1			BF762381	XRRA1	chr11	74572081	-	CCAR2	chr8	22462271	+
3UTR-3UTR	ENST00000460006	ENST00000398970		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
3UTR-3UTR	ENST00000460006	ENST00000300574		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
3UTR-3UTR	ENST00000460006	ENST00000574295		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
3UTR-intron	ENST00000460006	ENST00000572145		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000379062	ENST00000398970		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000379062	ENST00000300574		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000379062	ENST00000574295		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-intron	ENST00000379062	ENST00000572145		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000379070	ENST00000398970		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000379070	ENST00000300574		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000379070	ENST00000574295		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-intron	ENST00000379070	ENST00000572145		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000535100	ENST00000398970		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000535100	ENST00000300574		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-3UTR	ENST00000535100	ENST00000574295		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
intron-intron	ENST00000535100	ENST00000572145		ChiTaRS3.1			DN999202	CDS2	chr20	5176289	+	CRK	chr17	1325788	-
5CDS-intron	ENST00000383463	ENST00000373913		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000383463	ENST00000401952		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000383463	ENST00000373907		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000383463	ENST00000339266		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000383463	ENST00000475894		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-5UTR	ENST00000383463	ENST00000340491		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000417226	ENST00000373913		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000417226	ENST00000401952		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000417226	ENST00000373907		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000417226	ENST00000339266		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000417226	ENST00000475894		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-5UTR	ENST00000417226	ENST00000340491		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000502878	ENST00000373913		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000502878	ENST00000401952		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000502878	ENST00000373907		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000502878	ENST00000339266		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000502878	ENST00000475894		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-5UTR	ENST00000502878	ENST00000340491		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000389735	ENST00000373913		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000389735	ENST00000401952		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000389735	ENST00000373907		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000389735	ENST00000339266		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-intron	ENST00000389735	ENST00000475894		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
5CDS-5UTR	ENST00000389735	ENST00000340491		ChiTaRS3.1			AK000595	HMCES	chr3	128998597	+	DLGAP4	chr20	35090183	+
intron-5UTR	ENST00000448662	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-intron	ENST00000448662	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000448662	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000431808	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000431808	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000284776	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000284776	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000437304	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000437304	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000319471	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000319471	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000449407	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000449407	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000355634	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000355634	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-intron	ENST00000393528	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
5UTR-5UTR	ENST00000393528	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-intron	ENST00000418609	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000418609	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000429150		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000416623		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000392309		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000392307		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000437412		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000444202		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-intron	ENST00000498125	ENST00000493898		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000360537		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000354765		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000367572		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
intron-5UTR	ENST00000498125	ENST00000367571		ChiTaRS3.1			DA013158	SORBS2	chr4	186696379	-	PLAGL1	chr6	144281681	-
Frame-shit	ENST00000316448	ENST00000229854		ChiTaRS3.1			BE837730	CALR	chr19	13051121	+	MCM3	chr6	52137249	-
Frame-shit	ENST00000316448	ENST00000596288		ChiTaRS3.1			BE837730	CALR	chr19	13051121	+	MCM3	chr6	52137249	-
Frame-shit	ENST00000316448	ENST00000419835		ChiTaRS3.1			BE837730	CALR	chr19	13051121	+	MCM3	chr6	52137249	-
5CDS-intron	ENST00000316448	ENST00000476448		ChiTaRS3.1			BE837730	CALR	chr19	13051121	+	MCM3	chr6	52137249	-
3UTR-intron	ENST00000229379	ENST00000294360		ChiTaRS3.1			AU132176	COX6A1	chr12	120878342	+	C1orf123	chr1	53685366	-
3UTR-intron	ENST00000229379	ENST00000470385		ChiTaRS3.1			AU132176	COX6A1	chr12	120878342	+	C1orf123	chr1	53685366	-
3UTR-3CDS	ENST00000326003	ENST00000373823		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000373808		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000436847		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000449733		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000412819		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000394353		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000341272		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000545652		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3CDS	ENST00000326003	ENST00000373818		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3UTR	ENST00000326003	ENST00000485767		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-3UTR	ENST00000326003	ENST00000373807		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
3UTR-intron	ENST00000326003	ENST00000373806		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000373823		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000373808		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000436847		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000449733		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000412819		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000394353		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000341272		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000545652		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000597483	ENST00000373818		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000597483	ENST00000485767		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000597483	ENST00000373807		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-intron	ENST00000597483	ENST00000373806		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000373823		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000373808		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000436847		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000449733		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000412819		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000394353		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000341272		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000545652		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000593997	ENST00000373818		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000593997	ENST00000485767		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000593997	ENST00000373807		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-intron	ENST00000593997	ENST00000373806		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000373823		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000373808		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000436847		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000449733		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000412819		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000394353		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000341272		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000545652		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000595952	ENST00000373818		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000595952	ENST00000485767		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000595952	ENST00000373807		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-intron	ENST00000595952	ENST00000373806		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000373823		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000373808		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000436847		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000449733		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000412819		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000394353		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000341272		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000545652		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3CDS	ENST00000360617	ENST00000373818		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000360617	ENST00000485767		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-3UTR	ENST00000360617	ENST00000373807		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
intron-intron	ENST00000360617	ENST00000373806		ChiTaRS3.1			AI686170	KLK3	chr19	51363885	-	GSN	chr9	124079439	-
5CDS-intron	ENST00000302907	ENST00000005260		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000302907	ENST00000462558		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000391752	ENST00000005260		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000391752	ENST00000462558		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000402367	ENST00000005260		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000402367	ENST00000462558		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000391751	ENST00000005260		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000391751	ENST00000462558		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000391753	ENST00000005260		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
5CDS-intron	ENST00000391753	ENST00000462558		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
intron-intron	ENST00000441429	ENST00000005260		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
intron-intron	ENST00000441429	ENST00000462558		ChiTaRS3.1			BQ924718	RPS9	chr19	54711515	+	BAIAP2L1	chr7	98016023	-
intron-3UTR	ENST00000467129	ENST00000292205		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000467129	ENST00000368474		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000467129	ENST00000368471		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-intron	ENST00000467129	ENST00000471068		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000381808	ENST00000292205		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000381808	ENST00000368474		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000381808	ENST00000368471		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-intron	ENST00000381808	ENST00000471068		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000381812	ENST00000292205		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000381812	ENST00000368474		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000381812	ENST00000368471		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-intron	ENST00000381812	ENST00000471068		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000339987	ENST00000292205		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000339987	ENST00000368474		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000339987	ENST00000368471		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-intron	ENST00000339987	ENST00000471068		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000360779	ENST00000292205		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000360779	ENST00000368474		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000360779	ENST00000368471		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-intron	ENST00000360779	ENST00000471068		ChiTaRS3.1			BQ052493	SDCBP2	chr20	1352720	-	ADAR	chr1	154555230	-
intron-3UTR	ENST00000350997	ENST00000295522		ChiTaRS3.1			BG289620	FADS1	chr11	61568978	-	CLDN1	chr3	190024669	-
intron-3UTR	ENST00000536991	ENST00000295522		ChiTaRS3.1			BG289620	FADS1	chr11	61568978	-	CLDN1	chr3	190024669	-
intron-3UTR	ENST00000433932	ENST00000295522		ChiTaRS3.1			BG289620	FADS1	chr11	61568978	-	CLDN1	chr3	190024669	-
intron-3UTR	ENST00000460649	ENST00000295522		ChiTaRS3.1			BG289620	FADS1	chr11	61568978	-	CLDN1	chr3	190024669	-
intron-3UTR	ENST00000542506	ENST00000295522		ChiTaRS3.1			BG289620	FADS1	chr11	61568978	-	CLDN1	chr3	190024669	-
intron-3UTR	ENST00000541683	ENST00000295522		ChiTaRS3.1			BG289620	FADS1	chr11	61568978	-	CLDN1	chr3	190024669	-
intron-3UTR	ENST00000325509	ENST00000371227		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000371249		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000306402		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000353505		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000371246		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000347291		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000393949		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000325509	ENST00000371247		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000607232		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000371245		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000361941		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000277982		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000354106		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000371239		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000371241		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000325509	ENST00000474353		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000371227		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000371249		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000306402		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000353505		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000371246		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000347291		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000393949		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000518440	ENST00000371247		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000607232		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000371245		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000361941		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000277982		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000354106		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000371239		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000371241		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-intron	ENST00000518440	ENST00000474353		ChiTaRS3.1			AA258404	MSC	chr8	72753862	+	SORBS1	chr10	97073481	+
intron-3UTR	ENST00000374399	ENST00000371711		ChiTaRS3.1			BG766572	NIPAL3	chr1	24797788	+	B4GALT5	chr20	48251153	-
3UTR-3UTR	ENST00000003912	ENST00000371711		ChiTaRS3.1			BG766572	NIPAL3	chr1	24797788	+	B4GALT5	chr20	48251153	-
intron-3UTR	ENST00000358028	ENST00000371711		ChiTaRS3.1			BG766572	NIPAL3	chr1	24797788	+	B4GALT5	chr20	48251153	-
intron-3UTR	ENST00000339255	ENST00000371711		ChiTaRS3.1			BG766572	NIPAL3	chr1	24797788	+	B4GALT5	chr20	48251153	-
intron-3UTR	ENST00000428131	ENST00000371711		ChiTaRS3.1			BG766572	NIPAL3	chr1	24797788	+	B4GALT5	chr20	48251153	-
intron-3UTR	ENST00000488155	ENST00000371711		ChiTaRS3.1			BG766572	NIPAL3	chr1	24797788	+	B4GALT5	chr20	48251153	-
intron-intron	ENST00000404479	ENST00000344824		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000404479	ENST00000538887		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-3UTR	ENST00000404479	ENST00000300933		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000404479	ENST00000591645		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000318709	ENST00000344824		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000318709	ENST00000538887		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-3UTR	ENST00000318709	ENST00000300933		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000318709	ENST00000591645		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000459629	ENST00000344824		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000459629	ENST00000538887		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-3UTR	ENST00000459629	ENST00000300933		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000459629	ENST00000591645		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000409301	ENST00000344824		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000409301	ENST00000538887		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-3UTR	ENST00000409301	ENST00000300933		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
intron-intron	ENST00000409301	ENST00000591645		ChiTaRS3.1			BU623993	AVL9	chr7	33045991	-	TPM4	chr19	16212893	-
In-frame	ENST00000360467	ENST00000397517		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
In-frame	ENST00000360467	ENST00000539966		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
5CDS-5UTR	ENST00000360467	ENST00000481288		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
5CDS-5UTR	ENST00000360467	ENST00000376547		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-3CDS	ENST00000462309	ENST00000397517		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-3CDS	ENST00000462309	ENST00000539966		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-5UTR	ENST00000462309	ENST00000481288		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-5UTR	ENST00000462309	ENST00000376547		ChiTaRS3.1			DA820540	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-3CDS	ENST00000432884	ENST00000254480		ChiTaRS3.1			DA679994	ARPC1A	chr7	98972405	+	SMARCC1	chr3	47787485	-
intron-5UTR	ENST00000432884	ENST00000425518		ChiTaRS3.1			DA679994	ARPC1A	chr7	98972405	+	SMARCC1	chr3	47787485	-
intron-3CDS	ENST00000262942	ENST00000254480		ChiTaRS3.1			DA679994	ARPC1A	chr7	98972405	+	SMARCC1	chr3	47787485	-
intron-5UTR	ENST00000262942	ENST00000425518		ChiTaRS3.1			DA679994	ARPC1A	chr7	98972405	+	SMARCC1	chr3	47787485	-
intron-3CDS	ENST00000471960	ENST00000254480		ChiTaRS3.1			DA679994	ARPC1A	chr7	98972405	+	SMARCC1	chr3	47787485	-
intron-5UTR	ENST00000471960	ENST00000425518		ChiTaRS3.1			DA679994	ARPC1A	chr7	98972405	+	SMARCC1	chr3	47787485	-
intron-3UTR	ENST00000395131	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374606	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374610	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374607	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000463584	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000445559	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000452658	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000448594	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547952	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000491095	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000412289	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000425878	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000442285	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000552711	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000474406	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000431830	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000432391	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000451970	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547641	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000468094	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399385	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399383	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000383207	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000548040	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000482292	ENST00000293677		ChiTaRS3.1			BE408374	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3CDS	ENST00000309979	ENST00000264657		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000309979	ENST00000585517		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000309979	ENST00000389272		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000309979	ENST00000588969		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000309979	ENST00000404395		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-intron	ENST00000309979	ENST00000590776		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000299641	ENST00000264657		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000299641	ENST00000585517		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000299641	ENST00000389272		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000299641	ENST00000588969		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000299641	ENST00000404395		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-intron	ENST00000299641	ENST00000590776		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000398701	ENST00000264657		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000398701	ENST00000585517		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000398701	ENST00000389272		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000398701	ENST00000588969		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3CDS	ENST00000398701	ENST00000404395		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-intron	ENST00000398701	ENST00000590776		ChiTaRS3.1			T05579	NDST2	chr10	75561883	-	STAT3	chr17	40491411	-
intron-3UTR	ENST00000381844	ENST00000432648		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000381844	ENST00000446189		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000381844	ENST00000372984		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000238081	ENST00000432648		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000238081	ENST00000446189		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000238081	ENST00000372984		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000474715	ENST00000432648		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000474715	ENST00000446189		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
intron-3UTR	ENST00000474715	ENST00000372984		ChiTaRS3.1			CA411585	YWHAQ	chr2	9724897	+	AKIRIN1	chr1	39469759	-
3UTR-5UTR	ENST00000249760	ENST00000481476		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
3UTR-3UTR	ENST00000249760	ENST00000340607		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
intron-5UTR	ENST00000490194	ENST00000481476		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
intron-3UTR	ENST00000490194	ENST00000340607		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
intron-5UTR	ENST00000487418	ENST00000481476		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
intron-3UTR	ENST00000487418	ENST00000340607		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
3UTR-5UTR	ENST00000479013	ENST00000481476		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
3UTR-3UTR	ENST00000479013	ENST00000340607		ChiTaRS3.1			BM797058	IVD	chr15	40711460	+	PTGES	chr9	132501175	-
intron-3UTR	ENST00000316623	ENST00000398514		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-3UTR	ENST00000316623	ENST00000343218		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-intron	ENST00000316623	ENST00000534907		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-intron	ENST00000316623	ENST00000504965		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-3UTR	ENST00000561429	ENST00000398514		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-3UTR	ENST00000561429	ENST00000343218		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-intron	ENST00000561429	ENST00000534907		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-intron	ENST00000561429	ENST00000504965		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-3UTR	ENST00000560355	ENST00000398514		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-3UTR	ENST00000560355	ENST00000343218		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-intron	ENST00000560355	ENST00000534907		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-intron	ENST00000560355	ENST00000504965		ChiTaRS3.1			AA330451	FBN1	chr15	48704874	-	DPYSL3	chr5	146771115	-
intron-3CDS	ENST00000358901	ENST00000361413		ChiTaRS3.1			DA730565	VCP	chr9	35056904	-	KIAA0753	chr17	6498365	-
intron-3CDS	ENST00000358901	ENST00000542606		ChiTaRS3.1			DA730565	VCP	chr9	35056904	-	KIAA0753	chr17	6498365	-
intron-3CDS	ENST00000358901	ENST00000572370		ChiTaRS3.1			DA730565	VCP	chr9	35056904	-	KIAA0753	chr17	6498365	-
intron-3CDS	ENST00000358901	ENST00000589033		ChiTaRS3.1			DA730565	VCP	chr9	35056904	-	KIAA0753	chr17	6498365	-
intron-5UTR	ENST00000358901	ENST00000575027		ChiTaRS3.1			DA730565	VCP	chr9	35056904	-	KIAA0753	chr17	6498365	-
5CDS-3UTR	ENST00000371108	ENST00000313949		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000371108	ENST00000371098		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000371075		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000371100		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000371108	ENST00000371099		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000371102		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000464624		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000371108	ENST00000306120		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000371095		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000371085		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000354359		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000265620		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000371108	ENST00000306090		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000371108	ENST00000371081		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000313949		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000263440	ENST00000371098		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000371075		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000371100		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000263440	ENST00000371099		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000371102		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000464624		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000263440	ENST00000306120		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000371095		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000371085		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000354359		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000265620		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-3UTR	ENST00000263440	ENST00000306090		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
5CDS-intron	ENST00000263440	ENST00000371081		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000313949		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-intron	ENST00000494765	ENST00000371098		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000371075		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000371100		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-intron	ENST00000494765	ENST00000371099		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000371102		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000464624		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-intron	ENST00000494765	ENST00000306120		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000371095		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000371085		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000354359		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000265620		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-3UTR	ENST00000494765	ENST00000306090		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-intron	ENST00000494765	ENST00000371081		ChiTaRS3.1			BP430141	ALG6	chr1	63868001	+	GNAS	chr20	57486111	+
intron-5UTR	ENST00000553891	ENST00000382582		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000553891	ENST00000355994		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000397875		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000397866		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000397865		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000527041		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000359645		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000528160		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000397869		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000553891	ENST00000354542		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000526111		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000580402		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000579129		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000578193		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000397863		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000553891	ENST00000397860		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000553891	ENST00000487778		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000318876	ENST00000382582		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000318876	ENST00000355994		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000397875		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000397866		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000397865		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000527041		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000359645		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000528160		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000397869		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000318876	ENST00000354542		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000526111		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000580402		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000579129		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000578193		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000397863		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000318876	ENST00000397860		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000318876	ENST00000487778		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000556143	ENST00000382582		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000556143	ENST00000355994		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000397875		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000397866		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000397865		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000527041		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000359645		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000528160		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000397869		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000556143	ENST00000354542		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000526111		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000580402		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000579129		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000578193		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000397863		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000556143	ENST00000397860		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000556143	ENST00000487778		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000394207	ENST00000382582		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000394207	ENST00000355994		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000397875		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000397866		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000397865		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000527041		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000359645		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000528160		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000397869		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000394207	ENST00000354542		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000526111		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000580402		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000579129		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000578193		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000397863		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000394207	ENST00000397860		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000394207	ENST00000487778		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000555072	ENST00000382582		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000555072	ENST00000355994		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000397875		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000397866		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000397865		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000527041		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000359645		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000528160		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000397869		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000555072	ENST00000354542		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000526111		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000580402		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000579129		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000578193		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000397863		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000555072	ENST00000397860		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000555072	ENST00000487778		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000554145	ENST00000382582		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000554145	ENST00000355994		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000397875		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000397866		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000397865		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000527041		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000359645		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000528160		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000397869		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000554145	ENST00000354542		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000526111		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000580402		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000579129		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000578193		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000397863		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-intron	ENST00000554145	ENST00000397860		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-5UTR	ENST00000554145	ENST00000487778		ChiTaRS3.1			DA272659	ZFYVE1	chr14	73437248	-	MBP	chr18	74729041	-
intron-3CDS	ENST00000225964	ENST00000263346		ChiTaRS3.1			AA063543	COL1A1	chr17	48261589	+	TCF25	chr16	89951048	-
intron-intron	ENST00000225964	ENST00000563406		ChiTaRS3.1			AA063543	COL1A1	chr17	48261589	+	TCF25	chr16	89951048	-
intron-intron	ENST00000225964	ENST00000263347		ChiTaRS3.1			AA063543	COL1A1	chr17	48261589	+	TCF25	chr16	89951048	-
intron-3CDS	ENST00000266397	ENST00000368147		ChiTaRS3.1			AI051248	ERP27	chr12	15067457	+	SPTA1	chr1	158607854	+
intron-intron	ENST00000266397	ENST00000485680		ChiTaRS3.1			AI051248	ERP27	chr12	15067457	+	SPTA1	chr1	158607854	+
intron-3CDS	ENST00000540097	ENST00000368147		ChiTaRS3.1			AI051248	ERP27	chr12	15067457	+	SPTA1	chr1	158607854	+
intron-intron	ENST00000540097	ENST00000485680		ChiTaRS3.1			AI051248	ERP27	chr12	15067457	+	SPTA1	chr1	158607854	+
intron-3CDS	ENST00000544881	ENST00000368147		ChiTaRS3.1			AI051248	ERP27	chr12	15067457	+	SPTA1	chr1	158607854	+
intron-intron	ENST00000544881	ENST00000485680		ChiTaRS3.1			AI051248	ERP27	chr12	15067457	+	SPTA1	chr1	158607854	+
intron-3UTR	ENST00000395123	ENST00000257013		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000395123	ENST00000464369		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-3UTR	ENST00000395124	ENST00000257013		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000395124	ENST00000464369		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-3UTR	ENST00000352187	ENST00000257013		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000352187	ENST00000464369		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-3UTR	ENST00000529554	ENST00000257013		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000529554	ENST00000464369		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-3UTR	ENST00000533524	ENST00000257013		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000533524	ENST00000464369		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-3UTR	ENST00000528098	ENST00000257013		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000528098	ENST00000464369		ChiTaRS3.1			BF829589	SLC43A3	chr11	57193034	-	FAM127A	chrX	134167079	+
intron-intron	ENST00000382199	ENST00000382199		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000421047		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000457616		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000346192		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000494906		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000382199		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000421047		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000457616		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000346192		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000494906		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000382199		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000421047		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000457616		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000346192		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000494906		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000382199		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000421047		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000457616		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000346192		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000494906		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000382199		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000421047		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000457616		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000346192		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000494906		ChiTaRS3.1			BX100154	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-5UTR	ENST00000221419	ENST00000253457		ChiTaRS3.1			AL526231	HNRNPL	chr19	39340408	-	EMC8	chr16	85833003	-
intron-5UTR	ENST00000221419	ENST00000435200		ChiTaRS3.1			AL526231	HNRNPL	chr19	39340408	-	EMC8	chr16	85833003	-
intron-5UTR	ENST00000600873	ENST00000253457		ChiTaRS3.1			AL526231	HNRNPL	chr19	39340408	-	EMC8	chr16	85833003	-
intron-5UTR	ENST00000600873	ENST00000435200		ChiTaRS3.1			AL526231	HNRNPL	chr19	39340408	-	EMC8	chr16	85833003	-
intron-3UTR	ENST00000331872	ENST00000390237		ChiTaRS3.1			AW959335	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000417584	ENST00000390237		ChiTaRS3.1			AW959335	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000311223	ENST00000390237		ChiTaRS3.1			AW959335	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000491322	ENST00000390237		ChiTaRS3.1			AW959335	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000339526	ENST00000390237		ChiTaRS3.1			AW959335	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-intron	ENST00000338316	ENST00000338316		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000338316	ENST00000537121		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000338316	ENST00000513693		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000537121	ENST00000338316		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000537121	ENST00000537121		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000537121	ENST00000513693		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000513693	ENST00000338316		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000513693	ENST00000537121		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
intron-intron	ENST00000513693	ENST00000513693		ChiTaRS3.1			BP430311	ADCY2	chr1	152006238	-	ADCY2	chr1	33487010	-
5UTR-3UTR	ENST00000239926	ENST00000534336		ChiTaRS3.1			BF672440	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
intron-3UTR	ENST00000421631	ENST00000534336		ChiTaRS3.1			BF672440	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
intron-3UTR	ENST00000509812	ENST00000534336		ChiTaRS3.1			BF672440	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
intron-3UTR	ENST00000515645	ENST00000534336		ChiTaRS3.1			BF672440	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
3UTR-3UTR	ENST00000503431	ENST00000261497		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-3UTR	ENST00000503431	ENST00000537526		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-intron	ENST00000503431	ENST00000455117		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-3UTR	ENST00000284440	ENST00000261497		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-3UTR	ENST00000284440	ENST00000537526		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-intron	ENST00000284440	ENST00000455117		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
intron-3UTR	ENST00000504818	ENST00000261497		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
intron-3UTR	ENST00000504818	ENST00000537526		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
intron-intron	ENST00000504818	ENST00000455117		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-3UTR	ENST00000508768	ENST00000261497		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-3UTR	ENST00000508768	ENST00000537526		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
3UTR-intron	ENST00000508768	ENST00000455117		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
intron-3UTR	ENST00000512788	ENST00000261497		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
intron-3UTR	ENST00000512788	ENST00000537526		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
intron-intron	ENST00000512788	ENST00000455117		ChiTaRS3.1			BG028938	UCHL1	chr4	41270155	+	USP22	chr17	20902964	-
Frame-shit	ENST00000355540	ENST00000375771		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000355540	ENST00000375766		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000355540	ENST00000400773		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-intron	ENST00000355540	ENST00000441801		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-intron	ENST00000355540	ENST00000332305		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-3UTR	ENST00000355540	ENST00000509138		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000359863	ENST00000375771		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000359863	ENST00000375766		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000359863	ENST00000400773		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-intron	ENST00000359863	ENST00000441801		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-intron	ENST00000359863	ENST00000332305		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-3UTR	ENST00000359863	ENST00000509138		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000446306	ENST00000375771		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000446306	ENST00000375766		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
Frame-shit	ENST00000446306	ENST00000400773		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-intron	ENST00000446306	ENST00000441801		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-intron	ENST00000446306	ENST00000332305		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
5CDS-3UTR	ENST00000446306	ENST00000509138		ChiTaRS3.1			BQ364082	TRRAP	chr7	98586536	+	FBLIM1	chr1	16111084	+
In-frame	ENST00000339399	ENST00000360803		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
5CDS-intron	ENST00000339399	ENST00000491635		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
5CDS-intron	ENST00000339399	ENST00000538293		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
5CDS-intron	ENST00000339399	ENST00000545048		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
intron-3CDS	ENST00000473205	ENST00000360803		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
intron-intron	ENST00000473205	ENST00000491635		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
intron-intron	ENST00000473205	ENST00000538293		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
intron-intron	ENST00000473205	ENST00000545048		ChiTaRS3.1			BG696756	ANP32B	chr9	100773593	+	GTPBP4	chr10	1063014	+
intron-3UTR	ENST00000366663	ENST00000329152		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000366663	ENST00000360342		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000366663	ENST00000337576		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000470540	ENST00000329152		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000470540	ENST00000360342		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000470540	ENST00000337576		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000427697	ENST00000329152		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000427697	ENST00000360342		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000427697	ENST00000337576		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000523410	ENST00000329152		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000523410	ENST00000360342		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
intron-3UTR	ENST00000523410	ENST00000337576		ChiTaRS3.1			CN303383	C1orf198	chr1	230979562	-	LZTS3	chr20	3143518	-
In-frame	ENST00000219204	ENST00000331923		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
In-frame	ENST00000219204	ENST00000290178		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
5CDS-intron	ENST00000219204	ENST00000472588		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
Frame-shit	ENST00000565794	ENST00000331923		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
Frame-shit	ENST00000565794	ENST00000290178		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
5CDS-intron	ENST00000565794	ENST00000472588		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
In-frame	ENST00000562023	ENST00000331923		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
In-frame	ENST00000562023	ENST00000290178		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
5CDS-intron	ENST00000562023	ENST00000472588		ChiTaRS3.1			DA287704	ARL2BP	chr16	57280053	+	PAXBP1	chr21	34123530	-
Frame-shit	ENST00000403665	ENST00000284268		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
Frame-shit	ENST00000403665	ENST00000535119		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
5CDS-intron	ENST00000403665	ENST00000503939		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
Frame-shit	ENST00000264692	ENST00000284268		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
Frame-shit	ENST00000264692	ENST00000535119		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
5CDS-intron	ENST00000264692	ENST00000503939		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
intron-3CDS	ENST00000492972	ENST00000284268		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
intron-3CDS	ENST00000492972	ENST00000535119		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
intron-intron	ENST00000492972	ENST00000503939		ChiTaRS3.1			AW951415	F11	chr4	187208898	+	ANKH	chr5	14711375	-
intron-3CDS	ENST00000514800	ENST00000563679		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000514800	ENST00000325823		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000514800	ENST00000447912		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000514800	ENST00000535621		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000514800	ENST00000455313		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000514800	ENST00000396410		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000514800	ENST00000569715		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000514800	ENST00000450288		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000355443	ENST00000563679		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000355443	ENST00000325823		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000355443	ENST00000447912		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000355443	ENST00000535621		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000355443	ENST00000455313		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000355443	ENST00000396410		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000355443	ENST00000569715		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000355443	ENST00000450288		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000329687	ENST00000563679		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000329687	ENST00000325823		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000329687	ENST00000447912		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000329687	ENST00000535621		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000329687	ENST00000455313		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000329687	ENST00000396410		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000329687	ENST00000569715		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000329687	ENST00000450288		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000508221	ENST00000563679		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000508221	ENST00000325823		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000508221	ENST00000447912		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000508221	ENST00000535621		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000508221	ENST00000455313		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000508221	ENST00000396410		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000508221	ENST00000569715		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000508221	ENST00000450288		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000507555	ENST00000563679		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000507555	ENST00000325823		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-3CDS	ENST00000507555	ENST00000447912		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000507555	ENST00000535621		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000507555	ENST00000455313		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000507555	ENST00000396410		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000507555	ENST00000569715		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-intron	ENST00000507555	ENST00000450288		ChiTaRS3.1			BP417084	MFSD10	chr4	2935680	-	PDXDC1	chr16	15127153	+
intron-5UTR	ENST00000399332	ENST00000248089		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574151		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000396916		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000399332	ENST00000572355		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574980		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000354679		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000248089		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574151		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000396916		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000553700	ENST00000572355		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574980		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000354679		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000248089		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574151		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000396916		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000556474	ENST00000572355		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574980		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000354679		ChiTaRS3.1			BM840752	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
In-frame	ENST00000433346	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000433346	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
5CDS-5UTR	ENST00000433346	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-3CDS	ENST00000449039	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-5UTR	ENST00000449039	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000007969	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
5CDS-5UTR	ENST00000007969	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000323702	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
5CDS-5UTR	ENST00000323702	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000443597	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
5CDS-5UTR	ENST00000443597	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000436789	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
5CDS-5UTR	ENST00000436789	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000392474		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000538733		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000337174		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000347034		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000324774		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000545538		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000412367		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000404169		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000402834		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000446440		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
In-frame	ENST00000429740	ENST00000392473		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
5CDS-5UTR	ENST00000429740	ENST00000535524		ChiTaRS3.1			DA116260	LRRC23	chr12	7015826	+	CAMKK2	chr12	121691277	-
intron-intron	ENST00000409687	ENST00000518164		ChiTaRS3.1			BQ050949	SAPCD2	chr9	139956737	-	RPL30	chr8	99054080	-
intron-intron	ENST00000409687	ENST00000521291		ChiTaRS3.1			BQ050949	SAPCD2	chr9	139956737	-	RPL30	chr8	99054080	-
intron-intron	ENST00000409687	ENST00000396070		ChiTaRS3.1			BQ050949	SAPCD2	chr9	139956737	-	RPL30	chr8	99054080	-
intron-intron	ENST00000409687	ENST00000287038		ChiTaRS3.1			BQ050949	SAPCD2	chr9	139956737	-	RPL30	chr8	99054080	-
intron-intron	ENST00000409687	ENST00000523172		ChiTaRS3.1			BQ050949	SAPCD2	chr9	139956737	-	RPL30	chr8	99054080	-
intron-3CDS	ENST00000544466	ENST00000394434		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000544466	ENST00000545646		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000544466	ENST00000274562		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000544466	ENST00000510191		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-5UTR	ENST00000544466	ENST00000511505		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000349258	ENST00000394434		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000349258	ENST00000545646		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000349258	ENST00000274562		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000349258	ENST00000510191		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-5UTR	ENST00000349258	ENST00000511505		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000258613	ENST00000394434		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000258613	ENST00000545646		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000258613	ENST00000274562		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-3CDS	ENST00000258613	ENST00000510191		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
intron-5UTR	ENST00000258613	ENST00000511505		ChiTaRS3.1			BE087245	THSD1	chr13	52971647	-	LARS	chr5	145537358	-
Frame-shit	ENST00000360284	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000360284	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000360284	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000360284	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
5CDS-intron	ENST00000360284	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000545748	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000545748	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000545748	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000545748	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
5CDS-intron	ENST00000545748	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000550082	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000550082	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000550082	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000550082	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
5CDS-intron	ENST00000550082	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000547206	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000547206	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000547206	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000547206	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-intron	ENST00000547206	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000243050	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000243050	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000243050	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000243050	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
5CDS-intron	ENST00000243050	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394825	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394825	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394825	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394825	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
5CDS-intron	ENST00000394825	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394824	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394824	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394824	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
Frame-shit	ENST00000394824	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
5CDS-intron	ENST00000394824	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000548232	ENST00000417626		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000548232	ENST00000436390		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000548232	ENST00000429673		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-3CDS	ENST00000548232	ENST00000336089		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-intron	ENST00000548232	ENST00000484043		ChiTaRS3.1			BF915953	NR4A1	chr12	52451160	+	IFRD2	chr3	50326265	-
intron-5UTR	ENST00000402738	ENST00000538352		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000402738	ENST00000025399		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000402738	ENST00000419869		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000407637	ENST00000538352		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000407637	ENST00000025399		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000407637	ENST00000419869		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000601319	ENST00000538352		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000601319	ENST00000025399		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000601319	ENST00000419869		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000264345	ENST00000538352		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000264345	ENST00000025399		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000264345	ENST00000419869		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000543130	ENST00000538352		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000543130	ENST00000025399		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000543130	ENST00000419869		ChiTaRS3.1			DA065415	HERC3	chr4	89618774	-	STRAP	chr12	16035532	+
intron-5UTR	ENST00000262160	ENST00000334828		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-intron	ENST00000262160	ENST00000467867		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-5UTR	ENST00000402690	ENST00000334828		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-intron	ENST00000402690	ENST00000467867		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-5UTR	ENST00000356825	ENST00000334828		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-intron	ENST00000356825	ENST00000467867		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-5UTR	ENST00000586040	ENST00000334828		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-intron	ENST00000586040	ENST00000467867		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-5UTR	ENST00000591214	ENST00000334828		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-intron	ENST00000591214	ENST00000467867		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-5UTR	ENST00000587353	ENST00000334828		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-intron	ENST00000587353	ENST00000467867		ChiTaRS3.1			AK125057	SMAD2	chr18	45453116	-	PGAM1	chr10	99186037	+
intron-3CDS	ENST00000319622	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000319622	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000319622	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000319622	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000319622	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000565184	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000565184	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000565184	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000565184	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000565184	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000389093	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000389093	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000389093	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000389093	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000389093	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000335181	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000335181	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000335181	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000335181	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000335181	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000568883	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000568883	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000568883	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000568883	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000568883	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000449901	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000449901	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000449901	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000449901	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000449901	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000565154	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000565154	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000565154	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000565154	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000565154	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000568459	ENST00000340556		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000568459	ENST00000410014		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000568459	ENST00000409665		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000568459	ENST00000409077		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-intron	ENST00000568459	ENST00000409131		ChiTaRS3.1			BM554547	PKM	chr15	72491714	-	MORN2	chr2	39108581	+
intron-3CDS	ENST00000408771	ENST00000308159		ChiTaRS3.1			AU124982	MIR548H3	chr6	97708182	-	NUP93	chr16	56839451	+
intron-3CDS	ENST00000408771	ENST00000569842		ChiTaRS3.1			AU124982	MIR548H3	chr6	97708182	-	NUP93	chr16	56839451	+
intron-3CDS	ENST00000408771	ENST00000564887		ChiTaRS3.1			AU124982	MIR548H3	chr6	97708182	-	NUP93	chr16	56839451	+
intron-3UTR	ENST00000408771	ENST00000569595		ChiTaRS3.1			AU124982	MIR548H3	chr6	97708182	-	NUP93	chr16	56839451	+
intron-3UTR	ENST00000408771	ENST00000542526		ChiTaRS3.1			AU124982	MIR548H3	chr6	97708182	-	NUP93	chr16	56839451	+
Frame-shit	ENST00000511216	ENST00000351989		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000511216	ENST00000383024		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000511216	ENST00000407755		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000351989		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000383024		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000407755		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000351989		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000383024		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000407755		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000351989		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000383024		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000407755		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000351989		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000383024		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000407755		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000351989		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000383024		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000407755		ChiTaRS3.1			AI992324	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-intron	ENST00000311713	ENST00000396604		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000311713	ENST00000396602		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000311713	ENST00000530463		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000311713	ENST00000396597		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000311713	ENST00000299606		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000278856	ENST00000396604		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000278856	ENST00000396602		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000278856	ENST00000530463		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000278856	ENST00000396597		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000278856	ENST00000299606		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000529106	ENST00000396604		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000529106	ENST00000396602		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000529106	ENST00000530463		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000529106	ENST00000396597		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000529106	ENST00000299606		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000525239	ENST00000396604		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000525239	ENST00000396602		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000525239	ENST00000530463		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000525239	ENST00000396597		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000525239	ENST00000299606		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000525752	ENST00000396604		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000525752	ENST00000396602		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000525752	ENST00000530463		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000525752	ENST00000396597		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000525752	ENST00000299606		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000540620	ENST00000396604		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000540620	ENST00000396602		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000540620	ENST00000530463		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-5UTR	ENST00000540620	ENST00000396597		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
intron-intron	ENST00000540620	ENST00000299606		ChiTaRS3.1			DA747329	WDR74	chr11	62609095	-	ZNF143	chr11	9482558	+
3UTR-3UTR	ENST00000295491	ENST00000441969		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000295491	ENST00000353836		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000295491	ENST00000442846		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000356298		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000295491	ENST00000432469		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000525998		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000436984		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000439889		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000339313		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000441969		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000353836		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000442846		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000356298		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000432469		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000525998		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000436984		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000439889		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000339313		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000441969		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000353836		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000442846		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000356298		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000432469		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000525998		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000436984		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000439889		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000339313		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000441969		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000353836		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000442846		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000356298		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000432469		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000525998		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000436984		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000439889		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000339313		ChiTaRS3.1			BX363877	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
intron-3UTR	ENST00000340170	ENST00000373896		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000340170	ENST00000419155		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000340170	ENST00000487555		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000340170	ENST00000312189		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000263208	ENST00000373896		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000263208	ENST00000419155		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000263208	ENST00000487555		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000263208	ENST00000312189		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000541063	ENST00000373896		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000541063	ENST00000419155		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000541063	ENST00000487555		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000541063	ENST00000312189		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000546308	ENST00000373896		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000546308	ENST00000419155		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000546308	ENST00000487555		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000546308	ENST00000312189		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000464189	ENST00000373896		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000464189	ENST00000419155		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000464189	ENST00000487555		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000464189	ENST00000312189		ChiTaRS3.1			BE930554	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
3UTR-3CDS	ENST00000328024	ENST00000310574		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
3UTR-3CDS	ENST00000328024	ENST00000408041		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
3UTR-intron	ENST00000328024	ENST00000461319		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-3CDS	ENST00000601897	ENST00000310574		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-3CDS	ENST00000601897	ENST00000408041		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-intron	ENST00000601897	ENST00000461319		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-3CDS	ENST00000594216	ENST00000310574		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-3CDS	ENST00000594216	ENST00000408041		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-intron	ENST00000594216	ENST00000461319		ChiTaRS3.1			BQ022479	RAB11B	chr19	8469049	-	SLC5A6	chr2	27423959	+
intron-3CDS	ENST00000439590	ENST00000519097		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000439590	ENST00000380036		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000439590	ENST00000406359		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000311111	ENST00000519097		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000311111	ENST00000380036		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000311111	ENST00000406359		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000584577	ENST00000519097		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000584577	ENST00000380036		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000584577	ENST00000406359		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000534490	ENST00000519097		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000534490	ENST00000380036		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000534490	ENST00000406359		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000533498	ENST00000519097		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000533498	ENST00000380036		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000533498	ENST00000406359		ChiTaRS3.1			R50162	RPL38	chr17	72205325	-	TEK	chr9	27190586	-
intron-3CDS	ENST00000240922	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000240922	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000477813	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000477813	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000497525	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000497525	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000497255	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000497255	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000493454	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000493454	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000493900	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000493900	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000467022	ENST00000246895		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-3CDS	ENST00000467022	ENST00000381060		ChiTaRS3.1			CD000349	NAA50	chr3	113440406	-	STATH	chr4	70866587	+
intron-intron	ENST00000265729	ENST00000261406		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000265729	ENST00000546220		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000419179	ENST00000261406		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000419179	ENST00000546220		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000490437	ENST00000261406		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000490437	ENST00000546220		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000394641	ENST00000261406		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000394641	ENST00000546220		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000431660	ENST00000261406		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000431660	ENST00000546220		ChiTaRS3.1			AU124815	SRI	chr7	87837858	-	EMG1	chr12	7125777	-
intron-intron	ENST00000587758	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587758	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587758	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587758	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588426	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588426	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588426	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588426	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000356783	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000356783	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000356783	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000356783	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000291901	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000291901	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000291901	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000291901	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000536926	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000536926	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000536926	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000536926	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588981	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588981	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588981	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000588981	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587465	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587465	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587465	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000587465	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000585321	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000585321	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000585321	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000585321	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000592920	ENST00000537971		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000592920	ENST00000011898		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000592920	ENST00000407263		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000592920	ENST00000492305		ChiTaRS3.1			AA196054	TNNT1	chr19	55649415	-	TSPAN9	chr12	3320844	-
intron-intron	ENST00000356554	ENST00000356554		ChiTaRS3.1			AA668350	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			AA668350	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000356554		ChiTaRS3.1			AA668350	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			AA668350	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
5CDS-3UTR	ENST00000302068	ENST00000313949		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000371098		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000302068	ENST00000371075		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000302068	ENST00000371100		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000371099		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000371102		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000302068	ENST00000464624		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000306120		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000371095		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000371085		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000354359		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000265620		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000306090		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000302068	ENST00000371081		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000509493	ENST00000313949		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000371098		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000509493	ENST00000371075		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000509493	ENST00000371100		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000371099		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000371102		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-3UTR	ENST00000509493	ENST00000464624		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000306120		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000371095		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000371085		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000354359		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000265620		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000306090		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
5CDS-intron	ENST00000509493	ENST00000371081		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-3UTR	ENST00000502545	ENST00000313949		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000371098		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-3UTR	ENST00000502545	ENST00000371075		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-3UTR	ENST00000502545	ENST00000371100		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000371099		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000371102		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-3UTR	ENST00000502545	ENST00000464624		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000306120		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000371095		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000371085		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000354359		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000265620		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000306090		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
3UTR-intron	ENST00000502545	ENST00000371081		ChiTaRS3.1			BC020762	FGB	chr4	155490429	+	GNAS	chr20	57485039	+
intron-3CDS	ENST00000561062	ENST00000264071		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000561062	ENST00000540257		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000561062	ENST00000601152		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000561062	ENST00000598006		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000561062	ENST00000596926		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000358583	ENST00000264071		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000358583	ENST00000540257		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000358583	ENST00000601152		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000358583	ENST00000598006		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000358583	ENST00000596926		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000300515	ENST00000264071		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000300515	ENST00000540257		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000300515	ENST00000601152		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000300515	ENST00000598006		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000300515	ENST00000596926		ChiTaRS3.1			BF947455	GOLGA6L9	chr15	83085750	-	TUBB4A	chr19	6501556	-
intron-3CDS	ENST00000396634	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000396634	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376806	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376806	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376809	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376809	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376802	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376802	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000431930	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000431930	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000444289	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000444289	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000551578	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000551578	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000551120	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000551120	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000552193	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000552193	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000416096	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000416096	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000443552	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000443552	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000417978	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000417978	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000547112	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000547112	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000552498	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000552498	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000549869	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000549869	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000442939	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000442939	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000457879	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000457879	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000438861	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000438861	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000547271	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000547271	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000453975	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000453975	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000547522	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000547522	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000383605	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000383605	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000383619	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000383619	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000549224	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000549224	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376822	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000376822	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000456012	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000456012	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000550728	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000550728	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000450342	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000450342	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000454091	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000454091	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000488889	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000488889	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000552493	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000552493	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000414592	ENST00000342206		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
intron-3CDS	ENST00000414592	ENST00000356413		ChiTaRS3.1			BG315205	HLA-A	chr6	1424100	+	IGBP1	chrX	69354482	+
Frame-shit	ENST00000249837	ENST00000372189		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000249837	ENST00000372195		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000249837	ENST00000372190		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
5CDS-intron	ENST00000249837	ENST00000481260		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000261517	ENST00000372189		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000261517	ENST00000372195		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000261517	ENST00000372190		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
5CDS-intron	ENST00000261517	ENST00000481260		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000395896	ENST00000372189		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000395896	ENST00000372195		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000395896	ENST00000372190		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
5CDS-intron	ENST00000395896	ENST00000481260		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000395898	ENST00000372189		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000395898	ENST00000372195		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
Frame-shit	ENST00000395898	ENST00000372190		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
5CDS-intron	ENST00000395898	ENST00000481260		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
intron-3CDS	ENST00000558919	ENST00000372189		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
intron-3CDS	ENST00000558919	ENST00000372195		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
intron-3CDS	ENST00000558919	ENST00000372190		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
intron-intron	ENST00000558919	ENST00000481260		ChiTaRS3.1			DA122668	VPS13C	chr15	62336412	-	RAPGEF1	chr9	134501428	-
intron-intron	ENST00000358338	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000358338	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000358338	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000358338	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000358338	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367567	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367567	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367567	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367567	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000367567	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000357570	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000357570	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000357570	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000357570	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000357570	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367570	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367570	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367570	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367570	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000367570	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000526775	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000526775	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000526775	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000526775	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000526775	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000360108	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000360108	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000360108	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000360108	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000360108	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367573	ENST00000518164		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367573	ENST00000521291		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367573	ENST00000396070		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000367573	ENST00000287038		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-5UTR	ENST00000367573	ENST00000523172		ChiTaRS3.1			CD389544	CACNA1E	chr1	181611728	-	RPL30	chr8	99055003	-
intron-intron	ENST00000252818	ENST00000577297		ChiTaRS3.1			BU628666	JUND	chr19	18391078	+	USP2-AS1	chr11	119290855	+
intron-intron	ENST00000252818	ENST00000498979		ChiTaRS3.1			BU628666	JUND	chr19	18391078	+	USP2-AS1	chr11	119290855	+
intron-intron	ENST00000252818	ENST00000500970		ChiTaRS3.1			BU628666	JUND	chr19	18391078	+	USP2-AS1	chr11	119290855	+
intron-intron	ENST00000252818	ENST00000578923		ChiTaRS3.1			BU628666	JUND	chr19	18391078	+	USP2-AS1	chr11	119290855	+
intron-intron	ENST00000252818	ENST00000530002		ChiTaRS3.1			BU628666	JUND	chr19	18391078	+	USP2-AS1	chr11	119290855	+
intron-intron	ENST00000283429	ENST00000535206		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-3UTR	ENST00000283429	ENST00000379731		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000283429	ENST00000541851		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000574733	ENST00000535206		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-3UTR	ENST00000574733	ENST00000379731		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000574733	ENST00000541851		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000404295	ENST00000535206		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-3UTR	ENST00000404295	ENST00000379731		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000404295	ENST00000541851		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000574425	ENST00000535206		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-3UTR	ENST00000574425	ENST00000379731		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000574425	ENST00000541851		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000572391	ENST00000535206		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-3UTR	ENST00000572391	ENST00000379731		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
intron-intron	ENST00000572391	ENST00000541851		ChiTaRS3.1			EC510108	NMRAL1	chr16	4513740	-	B4GALT1	chr9	33111316	-
5UTR-3UTR	ENST00000598188	ENST00000534336		ChiTaRS3.1			DW420833	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000359435	ENST00000534336		ChiTaRS3.1			DW420833	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000447614	ENST00000534336		ChiTaRS3.1			DW420833	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
intron-3UTR	ENST00000601043	ENST00000534336		ChiTaRS3.1			DW420833	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
3UTR-3UTR	ENST00000448635	ENST00000534336		ChiTaRS3.1			DW420833	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000595632	ENST00000534336		ChiTaRS3.1			DW420833	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
intron-3CDS	ENST00000311573	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000311573	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000311573	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000368340	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000368340	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000368340	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000347088	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000347088	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000347088	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000361831	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000361831	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000361831	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000355499	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000355499	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000355499	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000404643	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000404643	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000404643	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000407221	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000407221	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000407221	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000359205	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000359205	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000359205	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000295566	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000295566	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000295566	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000368330	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000368330	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000368330	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000368339	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000368339	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000368339	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000535662	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000535662	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000535662	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000405763	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000405763	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000405763	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000438245	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000438245	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000438245	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-3CDS	ENST00000476093	ENST00000229238		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000476093	ENST00000543164		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-5UTR	ENST00000476093	ENST00000543703		ChiTaRS3.1			DB519674	YY1AP1	chr1	155629912	-	MRPL51	chr12	6601464	-
intron-intron	ENST00000449985	ENST00000247138		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000449985	ENST00000376529		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-5UTR	ENST00000449985	ENST00000376521		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000449985	ENST00000445167		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000449985	ENST00000413561		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000449985	ENST00000376515		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000449985	ENST00000452555		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000449985	ENST00000376512		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000247138		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000376529		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-5UTR	ENST00000532998	ENST00000376521		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000445167		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000413561		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000376515		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000452555		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000532998	ENST00000376512		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000247138		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000376529		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-5UTR	ENST00000437139	ENST00000376521		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000445167		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000413561		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000376515		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000452555		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000437139	ENST00000376512		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000247138		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000376529		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-5UTR	ENST00000533070	ENST00000376521		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000445167		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000413561		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000376515		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000452555		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000533070	ENST00000376512		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000247138		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000376529		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-5UTR	ENST00000316425	ENST00000376521		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000445167		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000413561		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000376515		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000452555		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000316425	ENST00000376512		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000247138		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000376529		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-5UTR	ENST00000431792	ENST00000376521		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000445167		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000413561		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000376515		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000452555		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000431792	ENST00000376512		ChiTaRS3.1			DA799238	TMEM107	chr17	8076771	-	SLC35A2	chrX	48768947	-
intron-intron	ENST00000441864	ENST00000326764		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000441864	ENST00000376514		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246785	ENST00000326764		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246785	ENST00000376514		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246784	ENST00000326764		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246784	ENST00000376514		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000594793	ENST00000326764		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000594793	ENST00000376514		ChiTaRS3.1			AW005662	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-5UTR	ENST00000427025	ENST00000331825		ChiTaRS3.1			AX747703	NHSL1	chr6	138767927	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000343505	ENST00000331825		ChiTaRS3.1			AX747703	NHSL1	chr6	138767927	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000479393	ENST00000331825		ChiTaRS3.1			AX747703	NHSL1	chr6	138767927	-	FTL	chr19	49468566	+
intron-intron	ENST00000322213	ENST00000434753		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-intron	ENST00000322213	ENST00000468691		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3UTR	ENST00000322213	ENST00000371199		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3UTR	ENST00000322213	ENST00000355640		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-intron	ENST00000469129	ENST00000434753		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-intron	ENST00000469129	ENST00000468691		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3UTR	ENST00000469129	ENST00000371199		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3UTR	ENST00000469129	ENST00000355640		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-intron	ENST00000375340	ENST00000434753		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-intron	ENST00000375340	ENST00000468691		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3UTR	ENST00000375340	ENST00000371199		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3UTR	ENST00000375340	ENST00000355640		ChiTaRS3.1			BC046147	SMC1A	chrX	53439959	-	XIAP	chrX	123045233	+
intron-3CDS	ENST00000393066	ENST00000529639		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393066	ENST00000531743		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393066	ENST00000525297		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393066	ENST00000527548		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393066	ENST00000279259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3UTR	ENST00000393066	ENST00000529259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-intron	ENST00000393066	ENST00000434372		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000262294	ENST00000529639		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000262294	ENST00000531743		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000262294	ENST00000525297		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000262294	ENST00000527548		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000262294	ENST00000279259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3UTR	ENST00000262294	ENST00000529259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-intron	ENST00000262294	ENST00000434372		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000376149	ENST00000529639		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000376149	ENST00000531743		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000376149	ENST00000525297		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000376149	ENST00000527548		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000376149	ENST00000279259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3UTR	ENST00000376149	ENST00000529259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-intron	ENST00000376149	ENST00000434372		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393065	ENST00000529639		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393065	ENST00000531743		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393065	ENST00000525297		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393065	ENST00000527548		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000393065	ENST00000279259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3UTR	ENST00000393065	ENST00000529259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-intron	ENST00000393065	ENST00000434372		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000584889	ENST00000529639		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000584889	ENST00000531743		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000584889	ENST00000525297		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000584889	ENST00000527548		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3CDS	ENST00000584889	ENST00000279259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-3UTR	ENST00000584889	ENST00000529259		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-intron	ENST00000584889	ENST00000434372		ChiTaRS3.1			BU566095	TRIM37	chr17	57189470	-	FAU	chr11	64888260	-
intron-5UTR	ENST00000351960	ENST00000476041		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000351960	ENST00000315732		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000358965	ENST00000476041		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000358965	ENST00000315732		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000393695	ENST00000476041		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000393695	ENST00000315732		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000543450	ENST00000476041		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
intron-5UTR	ENST00000543450	ENST00000315732		ChiTaRS3.1			BQ669701	NUMA1	chr11	71727183	-	LSM10	chr1	36859623	-
Frame-shit	ENST00000254108	ENST00000398907		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000254108	ENST00000398905		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000254108	ENST00000288319		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000254108	ENST00000398897		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000254108	ENST00000398911		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000254108	ENST00000398910		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000254108	ENST00000417133		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000254108	ENST00000442448		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000254108	ENST00000453032		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000254108	ENST00000398919		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
5CDS-intron	ENST00000254108	ENST00000429727		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
5CDS-intron	ENST00000254108	ENST00000485493		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000380244	ENST00000398907		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000380244	ENST00000398905		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000380244	ENST00000288319		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000380244	ENST00000398897		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000380244	ENST00000398911		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000380244	ENST00000398910		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000380244	ENST00000417133		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000380244	ENST00000442448		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000380244	ENST00000453032		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000380244	ENST00000398919		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
5CDS-intron	ENST00000380244	ENST00000429727		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
5CDS-intron	ENST00000380244	ENST00000485493		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000568685	ENST00000398907		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000568685	ENST00000398905		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000568685	ENST00000288319		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000568685	ENST00000398897		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000568685	ENST00000398911		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000568685	ENST00000398910		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000568685	ENST00000417133		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000568685	ENST00000442448		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
In-frame	ENST00000568685	ENST00000453032		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
Frame-shit	ENST00000568685	ENST00000398919		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
5CDS-intron	ENST00000568685	ENST00000429727		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
5CDS-intron	ENST00000568685	ENST00000485493		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000398907		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000398905		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000288319		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000398897		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000398911		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000398910		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000417133		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000442448		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000453032		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-3CDS	ENST00000474990	ENST00000398919		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-intron	ENST00000474990	ENST00000429727		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
3UTR-intron	ENST00000474990	ENST00000485493		ChiTaRS3.1			S77574	FUS	chr16	31198158	+	ERG	chr21	39755846	-
intron-3UTR	ENST00000528498	ENST00000349394		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000528498	ENST00000555154		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000528900	ENST00000349394		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000528900	ENST00000555154		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000405097	ENST00000349394		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000405097	ENST00000555154		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000530301	ENST00000349394		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000530301	ENST00000555154		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000343115	ENST00000349394		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000343115	ENST00000555154		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000544551	ENST00000349394		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000544551	ENST00000555154		ChiTaRS3.1			BX097025	RDX	chr11	110104133	-	NXPH4	chr12	57619730	+
intron-3CDS	ENST00000448464	ENST00000319622		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000565184		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000389093		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000335181		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000568883		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000449901		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000565154		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000448464	ENST00000568459		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000319622		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000565184		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000389093		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000335181		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000568883		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000449901		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000565154		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000342697	ENST00000568459		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000319622		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000565184		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000389093		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000335181		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000568883		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000449901		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000565154		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
intron-3CDS	ENST00000378776	ENST00000568459		ChiTaRS3.1			CF131223	TP53INP1	chr8	95953237	-	PKM	chr15	72511380	-
Frame-shit	ENST00000260379	ENST00000378707		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000359836		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000541735		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000343523		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000378677		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000357033		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000474231		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000378723		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000378702		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000361471		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000260379	ENST00000378680		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
5CDS-intron	ENST00000260379	ENST00000288447		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
5CDS-intron	ENST00000260379	ENST00000445312		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000378707		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000359836		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000541735		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000343523		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000378677		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000357033		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000474231		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000378723		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000378702		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000361471		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
Frame-shit	ENST00000357790	ENST00000378680		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
5CDS-intron	ENST00000357790	ENST00000288447		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
5CDS-intron	ENST00000357790	ENST00000445312		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000378707		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000359836		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000541735		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000343523		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000378677		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000357033		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000474231		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000378723		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000378702		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000361471		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3CDS	ENST00000560274	ENST00000378680		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-intron	ENST00000560274	ENST00000288447		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-intron	ENST00000560274	ENST00000445312		ChiTaRS3.1			BU624867	RPLP1	chr15	69747573	-	DMD	chrX	31165430	+
intron-3UTR	ENST00000374005	ENST00000366523		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000374005	ENST00000366522		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000374005	ENST00000447569		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000374005	ENST00000487845		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-3UTR	ENST00000399173	ENST00000366523		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000399173	ENST00000366522		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000399173	ENST00000447569		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000399173	ENST00000487845		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-3UTR	ENST00000545953	ENST00000366523		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000545953	ENST00000366522		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000545953	ENST00000447569		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000545953	ENST00000487845		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-3UTR	ENST00000374004	ENST00000366523		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000374004	ENST00000366522		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000374004	ENST00000447569		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000374004	ENST00000487845		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-3UTR	ENST00000468038	ENST00000366523		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000468038	ENST00000366522		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000468038	ENST00000447569		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
intron-intron	ENST00000468038	ENST00000487845		ChiTaRS3.1			BC002836	FGR	chr1	27939139	-	EFCAB2	chr1	245250923	+
5CDS-3UTR	ENST00000264258	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000264258	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000264258	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000264258	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409000	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409000	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409000	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409000	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409028	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409028	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409028	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409028	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409320	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409320	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409320	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409320	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409733	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409733	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409733	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409733	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409650	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409650	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409650	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409650	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409038	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409038	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409038	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409038	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409711	ENST00000475381		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409711	ENST00000273512		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409711	ENST00000538775		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
5CDS-3UTR	ENST00000409711	ENST00000543711		ChiTaRS3.1			BU602013	RPL31	chr2	101619199	+	NCEH1	chr3	172349060	-
intron-5UTR	ENST00000351960	ENST00000395733		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000351960	ENST00000216075		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000351960	ENST00000395732		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000358965	ENST00000395733		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000358965	ENST00000216075		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000358965	ENST00000395732		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000393695	ENST00000395733		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000393695	ENST00000216075		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000393695	ENST00000395732		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000543450	ENST00000395733		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000543450	ENST00000216075		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
intron-5UTR	ENST00000543450	ENST00000395732		ChiTaRS3.1			AF230095	NUMA1	chr11	71778129	-	MIOX	chr22	50925300	+
5CDS-intron	ENST00000230050	ENST00000599470		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-3UTR	ENST00000230050	ENST00000321944		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-3UTR	ENST00000230050	ENST00000358301		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-intron	ENST00000230050	ENST00000597766		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-3UTR	ENST00000230050	ENST00000593690		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-3UTR	ENST00000230050	ENST00000599386		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-3UTR	ENST00000230050	ENST00000435673		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
5CDS-3UTR	ENST00000230050	ENST00000360442		ChiTaRS3.1			CD050400	RPS12	chr6	133138698	+	PAK4	chr19	39669994	+
intron-3UTR	ENST00000393977	ENST00000270189		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000429089		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000220809		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000352041		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000519510		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000393977	ENST00000429710		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000393977	ENST00000524009		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000270189		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000429089		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000220809		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000352041		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000519510		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000377503	ENST00000429710		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000377503	ENST00000524009		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000270189		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000429089		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000220809		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000352041		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000519510		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000257536	ENST00000429710		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000257536	ENST00000524009		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000270189		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000429089		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000220809		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000352041		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000519510		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000541762	ENST00000429710		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000541762	ENST00000524009		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000270189		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000429089		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000220809		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000352041		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000519510		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000519673	ENST00000429710		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000519673	ENST00000524009		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000270189		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000429089		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000220809		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000352041		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000519510		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000505287	ENST00000429710		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000505287	ENST00000524009		ChiTaRS3.1			BF765951	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
3UTR-3UTR	ENST00000520358	ENST00000451188		ChiTaRS3.1			DA788574	TSPAN18	chr11	44951660	+	TMEM151B	chr6	44244608	+
3UTR-intron	ENST00000520358	ENST00000438774		ChiTaRS3.1			DA788574	TSPAN18	chr11	44951660	+	TMEM151B	chr6	44244608	+
3UTR-3UTR	ENST00000340160	ENST00000451188		ChiTaRS3.1			DA788574	TSPAN18	chr11	44951660	+	TMEM151B	chr6	44244608	+
3UTR-intron	ENST00000340160	ENST00000438774		ChiTaRS3.1			DA788574	TSPAN18	chr11	44951660	+	TMEM151B	chr6	44244608	+
5CDS-intron	ENST00000435275	ENST00000249269		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000435275	ENST00000428154		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000435275	ENST00000420236		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000440692	ENST00000249269		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000440692	ENST00000428154		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000440692	ENST00000420236		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000372360	ENST00000249269		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000372360	ENST00000428154		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000372360	ENST00000420236		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-intron	ENST00000476545	ENST00000249269		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-intron	ENST00000476545	ENST00000428154		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-intron	ENST00000476545	ENST00000420236		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000360830	ENST00000249269		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000360830	ENST00000428154		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000360830	ENST00000420236		ChiTaRS3.1			AW838568	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5UTR-3UTR	ENST00000598188	ENST00000534336		ChiTaRS3.1			DW412002	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000359435	ENST00000534336		ChiTaRS3.1			DW412002	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000447614	ENST00000534336		ChiTaRS3.1			DW412002	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
intron-3UTR	ENST00000601043	ENST00000534336		ChiTaRS3.1			DW412002	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
3UTR-3UTR	ENST00000448635	ENST00000534336		ChiTaRS3.1			DW412002	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000595632	ENST00000534336		ChiTaRS3.1			DW412002	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
intron-3UTR	ENST00000535420	ENST00000286713		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000535420	ENST00000538954		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000535420	ENST00000347359		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
3UTR-3UTR	ENST00000368426	ENST00000286713		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
3UTR-intron	ENST00000368426	ENST00000538954		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
3UTR-intron	ENST00000368426	ENST00000347359		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-3UTR	ENST00000487542	ENST00000286713		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000487542	ENST00000538954		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000487542	ENST00000347359		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-3UTR	ENST00000417934	ENST00000286713		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000417934	ENST00000538954		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000417934	ENST00000347359		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-3UTR	ENST00000292176	ENST00000286713		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000292176	ENST00000538954		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-intron	ENST00000292176	ENST00000347359		ChiTaRS3.1			CA440911	ZBTB7B	chr1	154990924	-	STOM	chr9	124101433	+
intron-3UTR	ENST00000375203	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375203	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375203	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375203	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000375203	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375201	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375201	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375201	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000375201	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000375201	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000468502	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000468502	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000468502	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000468502	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000468502	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000549095	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000549095	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000549095	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000549095	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000549095	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000427136	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000427136	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000427136	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000427136	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000427136	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000439240	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000439240	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000439240	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000439240	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000439240	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000475964	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000475964	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000475964	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000475964	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000475964	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000547111	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000547111	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000547111	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000547111	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000547111	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000293709	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000293709	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000293709	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000293709	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000293709	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000383156	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000383156	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000383156	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000383156	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000383156	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000467437	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000467437	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000467437	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000467437	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000467437	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000553220	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000553220	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000553220	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000553220	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000553220	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000425571	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000425571	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000425571	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000425571	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000425571	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000435768	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000435768	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000435768	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000435768	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000435768	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000476416	ENST00000391854		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000476416	ENST00000450593		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000476416	ENST00000366598		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3UTR	ENST00000476416	ENST00000366597		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-intron	ENST00000476416	ENST00000484517		ChiTaRS3.1			AV747616	ATF6B	chr6	3468011	-	GNG4	chr1	235714533	-
intron-3CDS	ENST00000510175	ENST00000341547		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
intron-3CDS	ENST00000510175	ENST00000357063		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
intron-3CDS	ENST00000510175	ENST00000377534		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
intron-intron	ENST00000510175	ENST00000321797		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
intron-intron	ENST00000510175	ENST00000526202		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
intron-intron	ENST00000510175	ENST00000465261		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
intron-intron	ENST00000510175	ENST00000605961		ChiTaRS3.1			DB237035	ZNF718	chr4	127011	+	LMO7	chr13	76195897	+
3UTR-intron	ENST00000519374	ENST00000289371		ChiTaRS3.1			AI065143	ATP6V0E1	chr5	172461895	+	EIF5B	chr2	100003846	-
intron-intron	ENST00000519911	ENST00000289371		ChiTaRS3.1			AI065143	ATP6V0E1	chr5	172461895	+	EIF5B	chr2	100003846	-
5CDS-intron	ENST00000265093	ENST00000289371		ChiTaRS3.1			AI065143	ATP6V0E1	chr5	172461895	+	EIF5B	chr2	100003846	-
intron-intron	ENST00000517669	ENST00000289371		ChiTaRS3.1			AI065143	ATP6V0E1	chr5	172461895	+	EIF5B	chr2	100003846	-
intron-3UTR	ENST00000373248	ENST00000437099		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000373248	ENST00000323816		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000373248	ENST00000432992		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000373248	ENST00000540214		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000585266		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000580865		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000583882		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000542249		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000396115		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000579158		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000373248	ENST00000578655		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000307864	ENST00000437099		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000307864	ENST00000323816		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000307864	ENST00000432992		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000307864	ENST00000540214		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000585266		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000580865		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000583882		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000542249		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000396115		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000579158		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000307864	ENST00000578655		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000482166	ENST00000437099		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000482166	ENST00000323816		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000482166	ENST00000432992		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-3UTR	ENST00000482166	ENST00000540214		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000585266		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000580865		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000583882		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000542249		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000396115		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000579158		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
intron-intron	ENST00000482166	ENST00000578655		ChiTaRS3.1			AV704263	AIFM2	chr10	71873274	-	GAS7	chr17	9817582	-
5UTR-5UTR	ENST00000359139	ENST00000265339		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-3UTR	ENST00000359139	ENST00000511807		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-5UTR	ENST00000395741	ENST00000265339		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-3UTR	ENST00000395741	ENST00000511807		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-5UTR	ENST00000395744	ENST00000265339		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-3UTR	ENST00000395744	ENST00000511807		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-5UTR	ENST00000216061	ENST00000265339		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5UTR-3UTR	ENST00000216061	ENST00000511807		ChiTaRS3.1			DN602328	PPP6R2	chr22	50810579	+	UBE2B	chr5	133707260	+
5CDS-5UTR	ENST00000343986	ENST00000429829		ChiTaRS3.1			AV751221	RPS21	chr20	60963578	+	XIST	chrX	73069668	-
5CDS-5UTR	ENST00000492356	ENST00000429829		ChiTaRS3.1			AV751221	RPS21	chr20	60963578	+	XIST	chrX	73069668	-
5CDS-5UTR	ENST00000370562	ENST00000429829		ChiTaRS3.1			AV751221	RPS21	chr20	60963578	+	XIST	chrX	73069668	-
5CDS-5UTR	ENST00000450116	ENST00000429829		ChiTaRS3.1			AV751221	RPS21	chr20	60963578	+	XIST	chrX	73069668	-
intron-intron	ENST00000265000	ENST00000297268		ChiTaRS3.1			BQ004985	GALNT7	chr4	174137360	+	COL1A2	chr7	94047144	-
intron-intron	ENST00000512285	ENST00000297268		ChiTaRS3.1			BQ004985	GALNT7	chr4	174137360	+	COL1A2	chr7	94047144	-
intron-intron	ENST00000502407	ENST00000297268		ChiTaRS3.1			BQ004985	GALNT7	chr4	174137360	+	COL1A2	chr7	94047144	-
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ100458	ETV6	chr12	12030685	+	RUNX1	chr21	36343241	-
3UTR-3CDS	ENST00000377107	ENST00000324679		ChiTaRS3.1			N29021	USP11	chrX	47107501	+	SAV1	chr14	51111547	-
3UTR-3CDS	ENST00000218348	ENST00000324679		ChiTaRS3.1			N29021	USP11	chrX	47107501	+	SAV1	chr14	51111547	-
intron-3UTR	ENST00000397967	ENST00000558401		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000397967	ENST00000559916		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000397967	ENST00000544417		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000397967	ENST00000559220		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000340900	ENST00000558401		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000340900	ENST00000559916		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000340900	ENST00000544417		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000340900	ENST00000559220		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000412779	ENST00000558401		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000412779	ENST00000559916		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000412779	ENST00000544417		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000412779	ENST00000559220		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000555698	ENST00000558401		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000555698	ENST00000559916		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000555698	ENST00000544417		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000555698	ENST00000559220		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000397970	ENST00000558401		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000397970	ENST00000559916		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-intron	ENST00000397970	ENST00000544417		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000397970	ENST00000559220		ChiTaRS3.1			DA974342	RNASE1	chr14	21270012	-	B2M	chr15	45010080	+
intron-3UTR	ENST00000335765	ENST00000336615		ChiTaRS3.1			AV703000	UNC119	chr17	26874715	-	PNPLA2	chr11	825127	+
intron-3UTR	ENST00000484980	ENST00000336615		ChiTaRS3.1			AV703000	UNC119	chr17	26874715	-	PNPLA2	chr11	825127	+
intron-3UTR	ENST00000301032	ENST00000336615		ChiTaRS3.1			AV703000	UNC119	chr17	26874715	-	PNPLA2	chr11	825127	+
intron-3UTR	ENST00000470125	ENST00000336615		ChiTaRS3.1			AV703000	UNC119	chr17	26874715	-	PNPLA2	chr11	825127	+
intron-3UTR	ENST00000262746	ENST00000237289		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-intron	ENST00000262746	ENST00000485192		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-3UTR	ENST00000319248	ENST00000237289		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-intron	ENST00000319248	ENST00000485192		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-3UTR	ENST00000372079	ENST00000237289		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-intron	ENST00000372079	ENST00000485192		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-3UTR	ENST00000483583	ENST00000237289		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-intron	ENST00000483583	ENST00000485192		ChiTaRS3.1			CD742959	PRDX1	chr1	45976963	+	TNFAIP3	chr6	138203925	-
intron-3CDS	ENST00000479094	ENST00000345136		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000357649		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000354589		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000398774		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000322810		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000354958		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000356346		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000436759		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000479094	ENST00000527096		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000345136		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000357649		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000354589		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000398774		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000322810		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000354958		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000356346		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000436759		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000423591	ENST00000527096		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000345136		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000357649		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000354589		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000398774		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000322810		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000354958		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000356346		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000436759		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3CDS	ENST00000375412	ENST00000527096		ChiTaRS3.1			AW753268	FAM120AOS	chr9	96209250	-	PLEC	chr8	144995640	-
intron-3UTR	ENST00000264674	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000264674	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000264674	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000264674	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000264674	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000264674	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000392736	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000392736	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000392736	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000392736	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000392736	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000392736	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000464456	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000464456	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000464456	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000464456	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000464456	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000464456	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000472280	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000472280	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000472280	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000472280	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000472280	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000472280	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000494292	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000494292	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000494292	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000494292	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000494292	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000494292	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000468789	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000468789	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000468789	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000468789	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000468789	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000468789	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000460814	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000460814	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000460814	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000460814	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000460814	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000460814	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000433243	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000433243	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000433243	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000433243	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000433243	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000433243	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000485957	ENST00000296444		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000485957	ENST00000444115		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000485957	ENST00000426002		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-5UTR	ENST00000485957	ENST00000465449		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000485957	ENST00000442747		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000485957	ENST00000443308		ChiTaRS3.1			CD722129	MECOM	chr3	168909173	-	SHISA5	chr3	48509389	-
intron-3UTR	ENST00000536769	ENST00000452647		ChiTaRS3.1			BP394957	UBC	chr12	125396193	-	TSTD3	chr6	99968931	+
5CDS-3UTR	ENST00000538617	ENST00000452647		ChiTaRS3.1			BP394957	UBC	chr12	125396193	-	TSTD3	chr6	99968931	+
5CDS-3UTR	ENST00000546120	ENST00000452647		ChiTaRS3.1			BP394957	UBC	chr12	125396193	-	TSTD3	chr6	99968931	+
5CDS-3UTR	ENST00000339647	ENST00000452647		ChiTaRS3.1			BP394957	UBC	chr12	125396193	-	TSTD3	chr6	99968931	+
intron-3UTR	ENST00000536661	ENST00000452647		ChiTaRS3.1			BP394957	UBC	chr12	125396193	-	TSTD3	chr6	99968931	+
3UTR-intron	ENST00000452148	ENST00000558351		ChiTaRS3.1			BC031302	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-3UTR	ENST00000452148	ENST00000334660		ChiTaRS3.1			BC031302	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-intron	ENST00000452148	ENST00000560397		ChiTaRS3.1			BC031302	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
5CDS-intron	ENST00000375949	ENST00000355973		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000376977		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000377016		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000377012		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000377034		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000449163		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000452300		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000547410		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000546913		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000550428		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000489750		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000419674		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000439457		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000438094		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000548767		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000486623		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000434660		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000423604		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000414980		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000417759		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000551140		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000446436		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375949	ENST00000471103		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000443440		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000425097		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000383543		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000552399		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000383537		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375949	ENST00000493602		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000383541		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000383542		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000383639		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000551423		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000383636		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375949	ENST00000495153		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000383637		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000383638		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375949	ENST00000448754		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000550820		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000458612		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375949	ENST00000464091		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000440316		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375949	ENST00000418225		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000355973		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000376977		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000377016		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000377012		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000377034		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000449163		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000452300		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000547410		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000546913		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000550428		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000489750		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000419674		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000439457		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000438094		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000548767		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000486623		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000434660		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000423604		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000414980		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000417759		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000551140		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000446436		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375943	ENST00000471103		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000443440		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000425097		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000383543		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000552399		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000383537		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375943	ENST00000493602		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000383541		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000383542		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000383639		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000551423		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000383636		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375943	ENST00000495153		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000383637		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000383638		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-intron	ENST00000375943	ENST00000448754		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000550820		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000458612		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-5UTR	ENST00000375943	ENST00000464091		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000440316		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
5CDS-3UTR	ENST00000375943	ENST00000418225		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000355973		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000376977		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000377016		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000377012		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000377034		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000449163		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000452300		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000547410		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000546913		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000550428		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000489750		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000419674		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000439457		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000438094		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000548767		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000486623		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000434660		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000423604		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000414980		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000417759		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000551140		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000446436		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-5UTR	ENST00000483406	ENST00000471103		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000443440		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000425097		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000383543		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000552399		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000383537		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-5UTR	ENST00000483406	ENST00000493602		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000383541		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000383542		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000383639		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000551423		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000383636		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-5UTR	ENST00000483406	ENST00000495153		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000383637		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000383638		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-intron	ENST00000483406	ENST00000448754		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000550820		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000458612		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-5UTR	ENST00000483406	ENST00000464091		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000440316		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000483406	ENST00000418225		ChiTaRS3.1			BI835315	CTRC	chr1	15769008	+	GABBR1	chr6	873384	-
3UTR-3UTR	ENST00000463381	ENST00000395648		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000463381	ENST00000308212		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000463381	ENST00000533940		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000463381	ENST00000525680		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-intron	ENST00000463381	ENST00000531130		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-intron	ENST00000463381	ENST00000531928		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000473312	ENST00000395648		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000473312	ENST00000308212		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000473312	ENST00000533940		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000473312	ENST00000525680		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000473312	ENST00000531130		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000473312	ENST00000531928		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000479901	ENST00000395648		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000479901	ENST00000308212		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000479901	ENST00000533940		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000479901	ENST00000525680		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000479901	ENST00000531130		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000479901	ENST00000531928		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000397238	ENST00000395648		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000397238	ENST00000308212		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000397238	ENST00000533940		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-3UTR	ENST00000397238	ENST00000525680		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-intron	ENST00000397238	ENST00000531130		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
3UTR-intron	ENST00000397238	ENST00000531928		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000476375	ENST00000395648		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000476375	ENST00000308212		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000476375	ENST00000533940		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000476375	ENST00000525680		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000476375	ENST00000531130		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000476375	ENST00000531928		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000335367	ENST00000395648		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000335367	ENST00000308212		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000335367	ENST00000533940		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-3UTR	ENST00000335367	ENST00000525680		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000335367	ENST00000531130		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
intron-intron	ENST00000335367	ENST00000531928		ChiTaRS3.1			BM991733	AGAP3	chr7	150841341	-	TP53I11	chr11	44955856	+
5CDS-3UTR	ENST00000377869	ENST00000378887		ChiTaRS3.1			BI002383	TG	chr8	133953700	+	SDHAF1	chr19	36486834	+
5CDS-3UTR	ENST00000220616	ENST00000378887		ChiTaRS3.1			BI002383	TG	chr8	133953700	+	SDHAF1	chr19	36486834	+
intron-3UTR	ENST00000542445	ENST00000378887		ChiTaRS3.1			BI002383	TG	chr8	133953700	+	SDHAF1	chr19	36486834	+
intron-3UTR	ENST00000519543	ENST00000378887		ChiTaRS3.1			BI002383	TG	chr8	133953700	+	SDHAF1	chr19	36486834	+
intron-3UTR	ENST00000522523	ENST00000378887		ChiTaRS3.1			BI002383	TG	chr8	133953700	+	SDHAF1	chr19	36486834	+
Frame-shit	ENST00000521662	ENST00000356352		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000357604		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000397053		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521662	ENST00000460569		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000356352		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000357604		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000397053		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521688	ENST00000460569		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000356352		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000357604		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000397053		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000520147	ENST00000460569		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000356352		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000357604		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000397053		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-5UTR	ENST00000522407	ENST00000460569		ChiTaRS3.1			BU570216	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3UTR	ENST00000261267	ENST00000229633		ChiTaRS3.1			BM993497	LYZ	chr12	69747548	-	HINT3	chr6	126300616	-
intron-3UTR	ENST00000549690	ENST00000229633		ChiTaRS3.1			BM993497	LYZ	chr12	69747548	-	HINT3	chr6	126300616	-
intron-3UTR	ENST00000548839	ENST00000229633		ChiTaRS3.1			BM993497	LYZ	chr12	69747548	-	HINT3	chr6	126300616	-
intron-3CDS	ENST00000404771	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000404771	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000404771	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000372440	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000372440	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000372440	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000372443	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000372443	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000372443	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000286628	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000286628	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000286628	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000286627	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000286627	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000286627	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000354353	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000354353	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000354353	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000404857	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000404857	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000404857	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000406533	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000406533	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000406533	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000484507	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000484507	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000484507	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000481070	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000481070	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000481070	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3CDS	ENST00000480683	ENST00000309428		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000480683	ENST00000585894		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-5UTR	ENST00000480683	ENST00000543197		ChiTaRS3.1			DB096973	KCNMA1	chr10	79110085	-	FAM134C	chr17	40744180	-
intron-3UTR	ENST00000222330	ENST00000381086		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-3UTR	ENST00000222330	ENST00000275521		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-intron	ENST00000222330	ENST00000381083		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-intron	ENST00000222330	ENST00000465642		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-3UTR	ENST00000398249	ENST00000381086		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-3UTR	ENST00000398249	ENST00000275521		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-intron	ENST00000398249	ENST00000381083		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
intron-intron	ENST00000398249	ENST00000465642		ChiTaRS3.1			W04328	GSK3A	chr19	42734970	-	IGFBP3	chr7	45952662	-
In-frame	ENST00000556922	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
Frame-shit	ENST00000556922	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
5CDS-5UTR	ENST00000556922	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
Frame-shit	ENST00000554444	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
In-frame	ENST00000554444	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
5CDS-5UTR	ENST00000554444	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
Frame-shit	ENST00000315491	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
In-frame	ENST00000315491	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
5CDS-5UTR	ENST00000315491	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000554116	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000554116	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-5UTR	ENST00000554116	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000555576	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000555576	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-5UTR	ENST00000555576	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000554336	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000554336	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-5UTR	ENST00000554336	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000553967	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-3CDS	ENST00000553967	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
intron-5UTR	ENST00000553967	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
Frame-shit	ENST00000304984	ENST00000295666		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
Frame-shit	ENST00000304984	ENST00000537922		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
5CDS-5UTR	ENST00000304984	ENST00000512512		ChiTaRS3.1			AI148209	TUBB3	chr16	90002210	-	IGFBP7	chr4	57898689	+
3UTR-3CDS	ENST00000216602	ENST00000286800		ChiTaRS3.1			AI652927	ZFYVE21	chr14	104199768	-	BACH1	chr21	30698905	-
3UTR-3CDS	ENST00000216602	ENST00000399921		ChiTaRS3.1			AI652927	ZFYVE21	chr14	104199768	-	BACH1	chr21	30698905	-
3UTR-intron	ENST00000216602	ENST00000462262		ChiTaRS3.1			AI652927	ZFYVE21	chr14	104199768	-	BACH1	chr21	30698905	-
3UTR-3CDS	ENST00000311141	ENST00000286800		ChiTaRS3.1			AI652927	ZFYVE21	chr14	104199768	-	BACH1	chr21	30698905	-
3UTR-3CDS	ENST00000311141	ENST00000399921		ChiTaRS3.1			AI652927	ZFYVE21	chr14	104199768	-	BACH1	chr21	30698905	-
3UTR-intron	ENST00000311141	ENST00000462262		ChiTaRS3.1			AI652927	ZFYVE21	chr14	104199768	-	BACH1	chr21	30698905	-
intron-intron	ENST00000534358	ENST00000373644		ChiTaRS3.1			FM165189	KMT2A	chr11	118355463	+	TET1	chr10	70440909	+
intron-intron	ENST00000389506	ENST00000373644		ChiTaRS3.1			FM165189	KMT2A	chr11	118355463	+	TET1	chr10	70440909	+
intron-intron	ENST00000354520	ENST00000373644		ChiTaRS3.1			FM165189	KMT2A	chr11	118355463	+	TET1	chr10	70440909	+
intron-intron	ENST00000420751	ENST00000373644		ChiTaRS3.1			FM165189	KMT2A	chr11	118355463	+	TET1	chr10	70440909	+
intron-intron	ENST00000311713	ENST00000469606		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000311713	ENST00000366994		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000311713	ENST00000366993		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000311713	ENST00000366992		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000311713	ENST00000440600		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000278856	ENST00000469606		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000278856	ENST00000366994		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000278856	ENST00000366993		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000278856	ENST00000366992		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000278856	ENST00000440600		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000529106	ENST00000469606		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000529106	ENST00000366994		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000529106	ENST00000366993		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000529106	ENST00000366992		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000529106	ENST00000440600		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525239	ENST00000469606		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525239	ENST00000366994		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525239	ENST00000366993		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525239	ENST00000366992		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525239	ENST00000440600		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525752	ENST00000469606		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525752	ENST00000366994		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525752	ENST00000366993		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525752	ENST00000366992		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000525752	ENST00000440600		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000540620	ENST00000469606		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000540620	ENST00000366994		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000540620	ENST00000366993		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000540620	ENST00000366992		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-intron	ENST00000540620	ENST00000440600		ChiTaRS3.1			DA802886	WDR74	chr11	62609096	-	INTS7	chr1	212208885	-
intron-3UTR	ENST00000372555	ENST00000355680		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372555	ENST00000397638		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372555	ENST00000291705		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372555	ENST00000458387		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372555	ENST00000451211		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372555	ENST00000397637		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-intron	ENST00000372555	ENST00000334494		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-intron	ENST00000372555	ENST00000397628		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372555	ENST00000440086		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-intron	ENST00000372555	ENST00000491389		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000355680		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000397638		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000291705		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000458387		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000451211		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000397637		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-intron	ENST00000372557	ENST00000334494		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-intron	ENST00000372557	ENST00000397628		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3UTR	ENST00000372557	ENST00000440086		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-intron	ENST00000372557	ENST00000491389		ChiTaRS3.1			AA424232	TNNC2	chr20	44453264	-	PRMT2	chr21	48084459	+
intron-3CDS	ENST00000342350	ENST00000469185		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000342350	ENST00000312541		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000342350	ENST00000541522		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000342350	ENST00000429381		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588499	ENST00000469185		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588499	ENST00000312541		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588499	ENST00000541522		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588499	ENST00000429381		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588295	ENST00000469185		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588295	ENST00000312541		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588295	ENST00000541522		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000588295	ENST00000429381		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000310604	ENST00000469185		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000310604	ENST00000312541		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000310604	ENST00000541522		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000310604	ENST00000429381		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000452796	ENST00000469185		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000452796	ENST00000312541		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000452796	ENST00000541522		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000452796	ENST00000429381		ChiTaRS3.1			H67836	DCAKD	chr17	43107695	-	BTN2A1	chr6	26463653	+
intron-3CDS	ENST00000394413	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394413	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394413	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394413	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394413	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000530902	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000530902	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000530902	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000530902	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000530902	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000508545	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000508545	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000508545	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000508545	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000508545	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000394414	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394414	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394414	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394414	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394414	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000394411	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394411	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394411	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394411	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394411	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000453001	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000453001	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000453001	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000453001	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000453001	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000356826	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000356826	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000356826	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000356826	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000356826	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000394410	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394410	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394410	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394410	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394410	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000336640	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000336640	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000336640	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000336640	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000336640	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000504198	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000504198	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000504198	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000504198	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000504198	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-3CDS	ENST00000394409	ENST00000449969		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394409	ENST00000288766		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394409	ENST00000378488		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394409	ENST00000419816		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000394409	ENST00000378486		ChiTaRS3.1			BG946330	PPP2R2B	chr5	146080422	+	PLCH2	chr1	2418396	+
intron-intron	ENST00000301488	ENST00000397668		ChiTaRS3.1			BU632318	CDK2AP2	chr11	67274442	+	HOOK2	chr19	12884383	+
intron-intron	ENST00000301488	ENST00000264827		ChiTaRS3.1			BU632318	CDK2AP2	chr11	67274442	+	HOOK2	chr19	12884383	+
intron-intron	ENST00000301488	ENST00000589965		ChiTaRS3.1			BU632318	CDK2AP2	chr11	67274442	+	HOOK2	chr19	12884383	+
intron-intron	ENST00000531506	ENST00000397668		ChiTaRS3.1			BU632318	CDK2AP2	chr11	67274442	+	HOOK2	chr19	12884383	+
intron-intron	ENST00000531506	ENST00000264827		ChiTaRS3.1			BU632318	CDK2AP2	chr11	67274442	+	HOOK2	chr19	12884383	+
intron-intron	ENST00000531506	ENST00000589965		ChiTaRS3.1			BU632318	CDK2AP2	chr11	67274442	+	HOOK2	chr19	12884383	+
intron-intron	ENST00000369144	ENST00000286301		ChiTaRS3.1			BC014625	EIF3A	chr10	120801629	-	CSF1R	chr5	149474470	+
intron-intron	ENST00000369144	ENST00000515239		ChiTaRS3.1			BC014625	EIF3A	chr10	120801629	-	CSF1R	chr5	149474470	+
intron-intron	ENST00000369144	ENST00000543093		ChiTaRS3.1			BC014625	EIF3A	chr10	120801629	-	CSF1R	chr5	149474470	+
intron-intron	ENST00000541549	ENST00000286301		ChiTaRS3.1			BC014625	EIF3A	chr10	120801629	-	CSF1R	chr5	149474470	+
intron-intron	ENST00000541549	ENST00000515239		ChiTaRS3.1			BC014625	EIF3A	chr10	120801629	-	CSF1R	chr5	149474470	+
intron-intron	ENST00000541549	ENST00000543093		ChiTaRS3.1			BC014625	EIF3A	chr10	120801629	-	CSF1R	chr5	149474470	+
5CDS-intron	ENST00000375772	ENST00000293872		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375772	ENST00000337351		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375772	ENST00000397783		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375772	ENST00000397780		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375772	ENST00000494366		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375722	ENST00000293872		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375722	ENST00000337351		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375722	ENST00000397783		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375722	ENST00000397780		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375722	ENST00000494366		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000326587	ENST00000293872		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000326587	ENST00000337351		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000326587	ENST00000397783		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000326587	ENST00000397780		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000326587	ENST00000494366		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375695	ENST00000293872		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375695	ENST00000337351		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375695	ENST00000397783		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375695	ENST00000397780		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
5CDS-intron	ENST00000375695	ENST00000494366		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
3UTR-intron	ENST00000494718	ENST00000293872		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
3UTR-intron	ENST00000494718	ENST00000337351		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
3UTR-intron	ENST00000494718	ENST00000397783		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
3UTR-intron	ENST00000494718	ENST00000397780		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
3UTR-intron	ENST00000494718	ENST00000494366		ChiTaRS3.1			BE904219	MAGED1	chrX	51640721	+	LUC7L	chr16	313297	+
intron-3UTR	ENST00000377795	ENST00000253362		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000377795	ENST00000354932		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000353334	ENST00000253362		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000353334	ENST00000354932		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000524315	ENST00000253362		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000524315	ENST00000354932		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000009530	ENST00000253362		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
intron-3UTR	ENST00000009530	ENST00000354932		ChiTaRS3.1			CB986308	CD74	chr5	149781555	-	BPIFA2	chr20	31769130	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AJ131466	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AJ131466	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AJ131466	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AJ131466	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000374566	ENST00000263228		ChiTaRS3.1			BF362357	EPB41L4B	chr9	111936590	-	UBE2R2	chr9	33912066	+
intron-3CDS	ENST00000374557	ENST00000263228		ChiTaRS3.1			BF362357	EPB41L4B	chr9	111936590	-	UBE2R2	chr9	33912066	+
intron-3CDS	ENST00000373242	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373242	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373242	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373242	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000373242	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373238	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373238	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373238	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373238	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000373238	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373241	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373241	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373241	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373241	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000373241	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000431664	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000431664	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000431664	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000431664	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000431664	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000458634	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000458634	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000458634	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000458634	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000458634	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373236	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373236	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373236	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000373236	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000373236	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000477464	ENST00000371429		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000477464	ENST00000540001		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000477464	ENST00000537333		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-3CDS	ENST00000477464	ENST00000234725		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-intron	ENST00000477464	ENST00000480952		ChiTaRS3.1			AI239866	SAR1A	chr10	71910118	+	NDC1	chr1	54269610	+
intron-5UTR	ENST00000356495	ENST00000257248		ChiTaRS3.1			M63154	PIGR	chr1	207105834	-	GIF	chr11	59612958	-
intron-5UTR	ENST00000356495	ENST00000541311		ChiTaRS3.1			M63154	PIGR	chr1	207105834	-	GIF	chr11	59612958	-
intron-5UTR	ENST00000487208	ENST00000257248		ChiTaRS3.1			M63154	PIGR	chr1	207105834	-	GIF	chr11	59612958	-
intron-5UTR	ENST00000487208	ENST00000541311		ChiTaRS3.1			M63154	PIGR	chr1	207105834	-	GIF	chr11	59612958	-
intron-3UTR	ENST00000268483	ENST00000275300		ChiTaRS3.1			BG568915	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000268483	ENST00000392145		ChiTaRS3.1			BG568915	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000423037	ENST00000275300		ChiTaRS3.1			BG568915	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000423037	ENST00000392145		ChiTaRS3.1			BG568915	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000426362	ENST00000275300		ChiTaRS3.1			BG568915	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000426362	ENST00000392145		ChiTaRS3.1			BG568915	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000441917	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000441917	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000441917	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000441917	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000541887	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000541887	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000541887	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000541887	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000261819	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000261819	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000261819	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000261819	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000535482	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000535482	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000535482	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000535482	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000544314	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000544314	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000544314	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000544314	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000344395	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000344395	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000344395	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000344395	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000536366	ENST00000393562		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000536366	ENST00000369620		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000536366	ENST00000393564		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-intron	ENST00000536366	ENST00000497281		ChiTaRS3.1			CA419747	ANAPC5	chr12	121746247	+	G6PD	chrX	153760136	+
intron-3UTR	ENST00000327443	ENST00000261530		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000556675		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000557263		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000557207		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-3UTR	ENST00000327443	ENST00000312858		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000556663		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000553588		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-3UTR	ENST00000426431	ENST00000261530		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000556675		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000557263		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000557207		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-3UTR	ENST00000426431	ENST00000312858		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000556663		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000553588		ChiTaRS3.1			AA494449	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-3UTR	ENST00000522853	ENST00000417037		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-3UTR	ENST00000522853	ENST00000396334		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000522853	ENST00000424893		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000522853	ENST00000495303		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000522853	ENST00000443433		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000522853	ENST00000481122		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-3UTR	ENST00000520919	ENST00000417037		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-3UTR	ENST00000520919	ENST00000396334		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000520919	ENST00000424893		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000520919	ENST00000495303		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000520919	ENST00000443433		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000520919	ENST00000481122		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-3UTR	ENST00000369800	ENST00000417037		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-3UTR	ENST00000369800	ENST00000396334		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000369800	ENST00000424893		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000369800	ENST00000495303		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000369800	ENST00000443433		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-intron	ENST00000369800	ENST00000481122		ChiTaRS3.1			CD367978	NEURL1B	chr5	172083661	+	MYD88	chr3	38183378	-
intron-3CDS	ENST00000342505	ENST00000366987		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-3CDS	ENST00000342505	ENST00000341491		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-3CDS	ENST00000342505	ENST00000366985		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-intron	ENST00000342505	ENST00000492118		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-intron	ENST00000342505	ENST00000336937		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-intron	ENST00000342505	ENST00000366983		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-3CDS	ENST00000465376	ENST00000366987		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-3CDS	ENST00000465376	ENST00000341491		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-3CDS	ENST00000465376	ENST00000366985		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-intron	ENST00000465376	ENST00000492118		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-intron	ENST00000465376	ENST00000336937		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
intron-intron	ENST00000465376	ENST00000366983		ChiTaRS3.1			BE719597	JAK1	chr1	65339137	-	ATF3	chr1	212791479	+
5UTR-5UTR	ENST00000394156	ENST00000332776		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000394156	ENST00000574788		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000394156	ENST00000304328		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000394156	ENST00000250066		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000394156	ENST00000572429		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000332776		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000574788		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000304328		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000268603	ENST00000250066		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000268603	ENST00000572429		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000332776		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000574788		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000304328		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000566827	ENST00000250066		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000566827	ENST00000572429		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000569624	ENST00000332776		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000569624	ENST00000574788		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000569624	ENST00000304328		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000569624	ENST00000250066		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000569624	ENST00000572429		ChiTaRS3.1			AY380223	CDH11	chr16	65087706	-	USP6	chr17	5033229	+
intron-3UTR	ENST00000376630	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000376630	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000415649	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000415649	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000415289	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000415289	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000444683	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000444683	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000383597	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000383597	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000425603	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000425603	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
3UTR-3UTR	ENST00000427936	ENST00000216044		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
3UTR-intron	ENST00000427936	ENST00000460605		ChiTaRS3.1			BG925618	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582407	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
Frame-shit	ENST00000331825	ENST00000355754		ChiTaRS3.1			BC050625	FTL	chr19	49468813	+	GBP4	chr1	89662907	-
5CDS-intron	ENST00000331825	ENST00000471938		ChiTaRS3.1			BC050625	FTL	chr19	49468813	+	GBP4	chr1	89662907	-
intron-3UTR	ENST00000236137	ENST00000436079		ChiTaRS3.1			H59323	SLC19A2	chr1	169441478	-	THAP7-AS1	chr22	21356834	+
intron-3UTR	ENST00000236137	ENST00000429962		ChiTaRS3.1			H59323	SLC19A2	chr1	169441478	-	THAP7-AS1	chr22	21356834	+
intron-3UTR	ENST00000236137	ENST00000452284		ChiTaRS3.1			H59323	SLC19A2	chr1	169441478	-	THAP7-AS1	chr22	21356834	+
intron-3UTR	ENST00000367804	ENST00000436079		ChiTaRS3.1			H59323	SLC19A2	chr1	169441478	-	THAP7-AS1	chr22	21356834	+
intron-3UTR	ENST00000367804	ENST00000429962		ChiTaRS3.1			H59323	SLC19A2	chr1	169441478	-	THAP7-AS1	chr22	21356834	+
intron-3UTR	ENST00000367804	ENST00000452284		ChiTaRS3.1			H59323	SLC19A2	chr1	169441478	-	THAP7-AS1	chr22	21356834	+
In-frame	ENST00000534358	ENST00000496455		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000295920		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000476145		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
In-frame	ENST00000389506	ENST00000496455		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000295920		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000476145		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
In-frame	ENST00000354520	ENST00000496455		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000354520	ENST00000295920		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000354520	ENST00000476145		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
3UTR-3CDS	ENST00000420751	ENST00000496455		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
3UTR-intron	ENST00000420751	ENST00000295920		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
3UTR-intron	ENST00000420751	ENST00000476145		ChiTaRS3.1			AF297746	KMT2A	chr11	118355029	+	GMPS	chr3	155611305	+
5CDS-3UTR	ENST00000078429	ENST00000233735		ChiTaRS3.1			BM126302	GNA11	chr19	3119254	+	REG1A	chr2	79350483	+
3UTR-3UTR	ENST00000586180	ENST00000233735		ChiTaRS3.1			BM126302	GNA11	chr19	3119254	+	REG1A	chr2	79350483	+
intron-3UTR	ENST00000306869	ENST00000356978		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000306869	ENST00000447653		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000306869	ENST00000555132		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000306869	ENST00000553542		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000306869	ENST00000544280		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-3UTR	ENST00000584318	ENST00000356978		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000584318	ENST00000447653		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000584318	ENST00000555132		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000584318	ENST00000553542		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
intron-intron	ENST00000584318	ENST00000544280		ChiTaRS3.1			AI141454	DCXR	chr17	79994181	+	CALM1	chr14	90873801	-
3UTR-intron	ENST00000391857	ENST00000376030		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
3UTR-intron	ENST00000391857	ENST00000503743		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
3UTR-intron	ENST00000391857	ENST00000422387		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
3UTR-intron	ENST00000391857	ENST00000361144		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
3UTR-intron	ENST00000391857	ENST00000400798		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
3UTR-intron	ENST00000391857	ENST00000400797		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
intron-intron	ENST00000477613	ENST00000376030		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
intron-intron	ENST00000477613	ENST00000503743		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
intron-intron	ENST00000477613	ENST00000422387		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
intron-intron	ENST00000477613	ENST00000361144		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
intron-intron	ENST00000477613	ENST00000400798		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
intron-intron	ENST00000477613	ENST00000400797		ChiTaRS3.1			BP333446	RPL13A	chr19	49995386	+	KAZN	chr1	15306034	+
In-frame	ENST00000366987	ENST00000560829		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000353874		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000261889		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000559844		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000561026		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000559339		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000341491	ENST00000560829		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000353874		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000261889		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000559844		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000561026		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000559339		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000366985	ENST00000560829		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000353874		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000261889		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000559844		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000561026		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000559339		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-3CDS	ENST00000492118	ENST00000560829		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000353874		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000261889		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000559844		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000561026		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000559339		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000336937	ENST00000560829		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000353874		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000261889		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000559844		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000561026		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000559339		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000366983	ENST00000560829		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000353874		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000261889		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000559844		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000561026		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000559339		ChiTaRS3.1			AW998144	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-3CDS	ENST00000373314	ENST00000521861		ChiTaRS3.1			BE090337	FAM129B	chr9	130279206	-	EIF3H	chr8	117738411	-
intron-3CDS	ENST00000373314	ENST00000276682		ChiTaRS3.1			BE090337	FAM129B	chr9	130279206	-	EIF3H	chr8	117738411	-
intron-3CDS	ENST00000373312	ENST00000521861		ChiTaRS3.1			BE090337	FAM129B	chr9	130279206	-	EIF3H	chr8	117738411	-
intron-3CDS	ENST00000373312	ENST00000276682		ChiTaRS3.1			BE090337	FAM129B	chr9	130279206	-	EIF3H	chr8	117738411	-
intron-3CDS	ENST00000468379	ENST00000521861		ChiTaRS3.1			BE090337	FAM129B	chr9	130279206	-	EIF3H	chr8	117738411	-
intron-3CDS	ENST00000468379	ENST00000276682		ChiTaRS3.1			BE090337	FAM129B	chr9	130279206	-	EIF3H	chr8	117738411	-
In-frame	ENST00000279907	ENST00000356151		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000302779		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000383716		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000463280		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000383715		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000484288		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000479241		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000536660		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
In-frame	ENST00000356828	ENST00000356151		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000302779		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000383716		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000463280		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000383715		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000484288		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000479241		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000536660		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-3CDS	ENST00000545232	ENST00000356151		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000302779		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000383716		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000463280		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000383715		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000484288		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000479241		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000536660		ChiTaRS3.1			BC108670	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5UTR-3CDS	ENST00000381602	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381602	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381602	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397962	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397962	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000309776	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000309776	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000509513	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000509513	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397959	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397959	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000381591	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000381591	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000403354	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000403354	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381607	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381607	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000402736	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000402736	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000602682	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000602682	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381604	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381604	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381584	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381584	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000558098	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000558098	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000545619	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000545619	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000535374	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000535374	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000344646		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374366		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374371		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000473115	ENST00000374370		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000473115	ENST00000335258		ChiTaRS3.1			BC036186	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
3UTR-intron	ENST00000244745	ENST00000232975		ChiTaRS3.1			AA909038	SOX4	chr6	21597104	-	TNNC1	chr3	52486493	+
intron-intron	ENST00000543472	ENST00000232975		ChiTaRS3.1			AA909038	SOX4	chr6	21597104	-	TNNC1	chr3	52486493	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BF992139	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-3CDS	ENST00000390548	ENST00000340208		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-3CDS	ENST00000390548	ENST00000424173		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-3CDS	ENST00000390548	ENST00000504921		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-3CDS	ENST00000390548	ENST00000514028		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-3CDS	ENST00000390548	ENST00000437473		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-3CDS	ENST00000390548	ENST00000510942		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-3CDS	ENST00000390548	ENST00000506554		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-intron	ENST00000390548	ENST00000508569		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-intron	ENST00000390548	ENST00000514015		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-intron	ENST00000390548	ENST00000539796		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
intron-intron	ENST00000390548	ENST00000503554		ChiTaRS3.1			AA830156	IGHG1	chr22	23243555	-	MEF2C	chr5	88018670	+
3UTR-3CDS	ENST00000435030	ENST00000264712		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-5UTR	ENST00000435030	ENST00000405914		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-intron	ENST00000435030	ENST00000496378		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-3CDS	ENST00000414838	ENST00000264712		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-5UTR	ENST00000414838	ENST00000405914		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-intron	ENST00000414838	ENST00000496378		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
intron-3CDS	ENST00000464066	ENST00000264712		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
intron-5UTR	ENST00000464066	ENST00000405914		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
intron-intron	ENST00000464066	ENST00000496378		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-3CDS	ENST00000397413	ENST00000264712		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-5UTR	ENST00000397413	ENST00000405914		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
3UTR-intron	ENST00000397413	ENST00000496378		ChiTaRS3.1			M86011	KIF5C	chr2	149881976	+	KIF3C	chr2	26205368	-
intron-3UTR	ENST00000209875	ENST00000582008		ChiTaRS3.1			U79248	CBX5	chr12	54629448	-	LINC00667	chr18	5243923	+
intron-3UTR	ENST00000439541	ENST00000582008		ChiTaRS3.1			U79248	CBX5	chr12	54629448	-	LINC00667	chr18	5243923	+
intron-3UTR	ENST00000550411	ENST00000582008		ChiTaRS3.1			U79248	CBX5	chr12	54629448	-	LINC00667	chr18	5243923	+
intron-3CDS	ENST00000382743	ENST00000312865		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000382743	ENST00000538643		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000525319	ENST00000312865		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000525319	ENST00000538643		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000524564	ENST00000312865		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000524564	ENST00000538643		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000532956	ENST00000312865		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000532956	ENST00000538643		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000529382	ENST00000312865		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000529382	ENST00000538643		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000528702	ENST00000312865		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000528702	ENST00000538643		ChiTaRS3.1			BF934224	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
Frame-shit	ENST00000304992	ENST00000491306		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
Frame-shit	ENST00000304992	ENST00000600880		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
Frame-shit	ENST00000304992	ENST00000446558		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000304992	ENST00000456586		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000304992	ENST00000598925		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000304992	ENST00000427280		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000304992	ENST00000441179		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
In-frame	ENST00000572621	ENST00000491306		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
In-frame	ENST00000572621	ENST00000600880		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
In-frame	ENST00000572621	ENST00000446558		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000572621	ENST00000456586		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000572621	ENST00000598925		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000572621	ENST00000427280		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
5CDS-5UTR	ENST00000572621	ENST00000441179		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-3CDS	ENST00000575116	ENST00000491306		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-3CDS	ENST00000575116	ENST00000600880		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-3CDS	ENST00000575116	ENST00000446558		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-5UTR	ENST00000575116	ENST00000456586		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-5UTR	ENST00000575116	ENST00000598925		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-5UTR	ENST00000575116	ENST00000427280		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
intron-5UTR	ENST00000575116	ENST00000441179		ChiTaRS3.1			BG478185	PRPF8	chr17	1581811	-	RPL37A	chr2	217363988	+
Frame-shit	ENST00000541529	ENST00000322927		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
Frame-shit	ENST00000541529	ENST00000426788		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
5CDS-intron	ENST00000541529	ENST00000494955		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
Frame-shit	ENST00000270776	ENST00000322927		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
Frame-shit	ENST00000270776	ENST00000426788		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
5CDS-intron	ENST00000270776	ENST00000494955		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
Frame-shit	ENST00000538557	ENST00000322927		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
Frame-shit	ENST00000538557	ENST00000426788		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
5CDS-intron	ENST00000538557	ENST00000494955		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
intron-3CDS	ENST00000498356	ENST00000322927		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
intron-3CDS	ENST00000498356	ENST00000426788		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
intron-intron	ENST00000498356	ENST00000494955		ChiTaRS3.1			CV813939	PGD	chr1	10464303	+	ZNF335	chr20	44582531	-
Frame-shit	ENST00000379151	ENST00000263125		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000397176		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000539722		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000263125		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000397176		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000539722		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000263125		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000397176		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000539722		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000263125		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000397176		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000539722		ChiTaRS3.1			DB496957	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
3UTR-intron	ENST00000452148	ENST00000558351		ChiTaRS3.1			BC073809	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-3UTR	ENST00000452148	ENST00000334660		ChiTaRS3.1			BC073809	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-intron	ENST00000452148	ENST00000560397		ChiTaRS3.1			BC073809	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
intron-5UTR	ENST00000311713	ENST00000461997		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-3UTR	ENST00000311713	ENST00000464682		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000311713	ENST00000489288		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000278856	ENST00000461997		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-3UTR	ENST00000278856	ENST00000464682		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000278856	ENST00000489288		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000529106	ENST00000461997		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-3UTR	ENST00000529106	ENST00000464682		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000529106	ENST00000489288		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000525239	ENST00000461997		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-3UTR	ENST00000525239	ENST00000464682		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000525239	ENST00000489288		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000525752	ENST00000461997		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-3UTR	ENST00000525752	ENST00000464682		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000525752	ENST00000489288		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000540620	ENST00000461997		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-3UTR	ENST00000540620	ENST00000464682		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
intron-5UTR	ENST00000540620	ENST00000489288		ChiTaRS3.1			DA747802	WDR74	chr11	62609095	-	RHNO1	chr12	2986389	+
5UTR-3CDS	ENST00000359511	ENST00000342228		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-3CDS	ENST00000359511	ENST00000520262		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-3CDS	ENST00000359511	ENST00000520179		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-intron	ENST00000359511	ENST00000523340		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-3CDS	ENST00000423538	ENST00000342228		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-3CDS	ENST00000423538	ENST00000520262		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-3CDS	ENST00000423538	ENST00000520179		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
5UTR-intron	ENST00000423538	ENST00000523340		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
intron-3CDS	ENST00000469537	ENST00000342228		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
intron-3CDS	ENST00000469537	ENST00000520262		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
intron-3CDS	ENST00000469537	ENST00000520179		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
intron-intron	ENST00000469537	ENST00000523340		ChiTaRS3.1			DA052497	SLC25A44	chr1	156164040	+	SLC20A2	chr8	42323437	-
intron-intron	ENST00000464527	ENST00000559471		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000464527	ENST00000261847		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000464527	ENST00000559122		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000445927	ENST00000559471		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000445927	ENST00000261847		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000445927	ENST00000559122		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000294947	ENST00000559471		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000294947	ENST00000261847		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
intron-intron	ENST00000294947	ENST00000559122		ChiTaRS3.1			BP249981	C2orf61	chr2	47387800	-	SECISBP2L	chr15	49288992	-
5UTR-5UTR	ENST00000397752	ENST00000359943		ChiTaRS3.1			DA441238	MET	chr7	116312632	+	FAM3C	chr7	121023066	-
5UTR-5UTR	ENST00000318493	ENST00000359943		ChiTaRS3.1			DA441238	MET	chr7	116312632	+	FAM3C	chr7	121023066	-
intron-5UTR	ENST00000436117	ENST00000359943		ChiTaRS3.1			DA441238	MET	chr7	116312632	+	FAM3C	chr7	121023066	-
intron-5UTR	ENST00000495962	ENST00000359943		ChiTaRS3.1			DA441238	MET	chr7	116312632	+	FAM3C	chr7	121023066	-
intron-5UTR	ENST00000539704	ENST00000359943		ChiTaRS3.1			DA441238	MET	chr7	116312632	+	FAM3C	chr7	121023066	-
5CDS-3UTR	ENST00000535601	ENST00000466801		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000535601	ENST00000409321		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000535601	ENST00000409115		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000535601	ENST00000341369		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000535601	ENST00000409683		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000535601	ENST00000410064		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000218364	ENST00000466801		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000218364	ENST00000409321		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000218364	ENST00000409115		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000218364	ENST00000341369		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000218364	ENST00000409683		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
5CDS-3UTR	ENST00000218364	ENST00000410064		ChiTaRS3.1			CN306050	HTATSF1	chrX	135592379	+	PTMA	chr2	232576670	+
intron-intron	ENST00000358788	ENST00000482253		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
intron-3UTR	ENST00000358788	ENST00000609116		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
intron-3UTR	ENST00000358788	ENST00000370197		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
intron-3UTR	ENST00000358788	ENST00000370198		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
intron-3UTR	ENST00000358788	ENST00000426398		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
intron-intron	ENST00000358788	ENST00000394184		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
intron-intron	ENST00000358788	ENST00000541987		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-intron	ENST00000409374	ENST00000482253		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000409374	ENST00000609116		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000409374	ENST00000370197		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000409374	ENST00000370198		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000409374	ENST00000426398		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-intron	ENST00000409374	ENST00000394184		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-intron	ENST00000409374	ENST00000541987		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-intron	ENST00000393909	ENST00000482253		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000393909	ENST00000609116		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000393909	ENST00000370197		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000393909	ENST00000370198		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-3UTR	ENST00000393909	ENST00000426398		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-intron	ENST00000393909	ENST00000394184		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
5CDS-intron	ENST00000393909	ENST00000541987		ChiTaRS3.1			BG708259	MRPL19	chr2	75881911	+	PTBP2	chr1	97279392	+
3UTR-3UTR	ENST00000374530	ENST00000274625		ChiTaRS3.1			AA234133	PALM2-AKAP2	chr9	112932805	+	FGF18	chr5	170883964	+
intron-3UTR	ENST00000302798	ENST00000274625		ChiTaRS3.1			AA234133	PALM2-AKAP2	chr9	112932805	+	FGF18	chr5	170883964	+
3UTR-intron	ENST00000358161	ENST00000455015		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000358161	ENST00000336832		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000358161	ENST00000423850		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000358161	ENST00000383817		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000358161	ENST00000430427		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000358161	ENST00000443115		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372739	ENST00000455015		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372739	ENST00000336832		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372739	ENST00000423850		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372739	ENST00000383817		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372739	ENST00000430427		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372739	ENST00000443115		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372731	ENST00000455015		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372731	ENST00000336832		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372731	ENST00000423850		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372731	ENST00000383817		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372731	ENST00000430427		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
3UTR-intron	ENST00000372731	ENST00000443115		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
intron-intron	ENST00000475367	ENST00000455015		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
intron-intron	ENST00000475367	ENST00000336832		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
intron-intron	ENST00000475367	ENST00000423850		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
intron-intron	ENST00000475367	ENST00000383817		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
intron-intron	ENST00000475367	ENST00000430427		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
intron-intron	ENST00000475367	ENST00000443115		ChiTaRS3.1			H05466	SPTAN1	chr9	131395882	-	CIDEC	chr3	9989230	+
In-frame	ENST00000276344	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000276344	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000276344	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000276344	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000276344	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393921	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393921	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393921	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393921	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393921	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370337	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370337	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370337	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370337	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370337	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393920	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393920	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393920	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393920	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393920	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370340	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370340	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370340	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370340	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370340	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370335	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370335	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370335	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370335	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370335	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000360243	ENST00000356761		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000360243	ENST00000299397		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000360243	ENST00000342245		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000360243	ENST00000533196		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000360243	ENST00000527275		ChiTaRS3.1			AW951504	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
intron-3CDS	ENST00000297142	ENST00000533820		ChiTaRS3.1			AK299619	NEUROD6	chr7	31377941	-	CAPN1	chr11	64974116	+
intron-3CDS	ENST00000297142	ENST00000533129		ChiTaRS3.1			AK299619	NEUROD6	chr7	31377941	-	CAPN1	chr11	64974116	+
intron-3CDS	ENST00000297142	ENST00000524773		ChiTaRS3.1			AK299619	NEUROD6	chr7	31377941	-	CAPN1	chr11	64974116	+
intron-3CDS	ENST00000297142	ENST00000279247		ChiTaRS3.1			AK299619	NEUROD6	chr7	31377941	-	CAPN1	chr11	64974116	+
intron-intron	ENST00000297142	ENST00000527469		ChiTaRS3.1			AK299619	NEUROD6	chr7	31377941	-	CAPN1	chr11	64974116	+
intron-intron	ENST00000297142	ENST00000527323		ChiTaRS3.1			AK299619	NEUROD6	chr7	31377941	-	CAPN1	chr11	64974116	+
intron-5UTR	ENST00000285243	ENST00000358232		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000351393		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000442325		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000423854		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000350494		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000542824		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-intron	ENST00000285243	ENST00000542050		ChiTaRS3.1			AU125685	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
3UTR-intron	ENST00000369317	ENST00000378707		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000359836		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000541735		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000343523		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000378677		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000357033		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000474231		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000378723		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000378702		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000361471		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000378680		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000288447		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000369317	ENST00000445312		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000378707		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000359836		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000541735		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000343523		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000378677		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000357033		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000474231		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000378723		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000378702		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000361471		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000378680		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000288447		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-intron	ENST00000475171	ENST00000445312		ChiTaRS3.1			BF508150	TXNIP	chr1	145442459	-	DMD	chrX	32768992	+
3UTR-3UTR	ENST00000252456	ENST00000357156		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-3UTR	ENST00000252456	ENST00000480759		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-intron	ENST00000252456	ENST00000417166		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-intron	ENST00000252456	ENST00000300469		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-3UTR	ENST00000252456	ENST00000374846		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-3UTR	ENST00000592923	ENST00000357156		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-3UTR	ENST00000592923	ENST00000480759		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-intron	ENST00000592923	ENST00000417166		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-intron	ENST00000592923	ENST00000300469		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
3UTR-3UTR	ENST00000592923	ENST00000374846		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000535659	ENST00000357156		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000535659	ENST00000480759		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-intron	ENST00000535659	ENST00000417166		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-intron	ENST00000535659	ENST00000300469		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000535659	ENST00000374846		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000588468	ENST00000357156		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000588468	ENST00000480759		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-intron	ENST00000588468	ENST00000417166		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-intron	ENST00000588468	ENST00000300469		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000588468	ENST00000374846		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000544952	ENST00000357156		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000544952	ENST00000480759		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-intron	ENST00000544952	ENST00000417166		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-intron	ENST00000544952	ENST00000300469		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
intron-3UTR	ENST00000544952	ENST00000374846		ChiTaRS3.1			BG107757	CNN1	chr19	11660852	+	DYNLRB1	chr20	33128625	+
5CDS-intron	ENST00000264229	ENST00000390168		ChiTaRS3.1			AW956960	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
5CDS-intron	ENST00000541073	ENST00000390168		ChiTaRS3.1			AW956960	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
5CDS-intron	ENST00000504228	ENST00000390168		ChiTaRS3.1			AW956960	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
intron-intron	ENST00000505410	ENST00000390168		ChiTaRS3.1			AW956960	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
intron-3CDS	ENST00000567004	ENST00000316403		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000567004	ENST00000546343		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000567004	ENST00000560366		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000567004	ENST00000405140		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000567004	ENST00000523500		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000542527	ENST00000316403		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000542527	ENST00000546343		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000542527	ENST00000560366		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000542527	ENST00000405140		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000542527	ENST00000523500		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
3UTR-3CDS	ENST00000569656	ENST00000316403		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
3UTR-3CDS	ENST00000569656	ENST00000546343		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
3UTR-3CDS	ENST00000569656	ENST00000560366		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
3UTR-3CDS	ENST00000569656	ENST00000405140		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
3UTR-3CDS	ENST00000569656	ENST00000523500		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000562695	ENST00000316403		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000562695	ENST00000546343		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000562695	ENST00000560366		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000562695	ENST00000405140		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000562695	ENST00000523500		ChiTaRS3.1			DR421724	C16orf52	chr16	22098623	+	CLU	chr8	27455766	-
intron-3CDS	ENST00000609205	ENST00000389048		ChiTaRS3.1			AF295356	MSN	chrX	64958479	+	ALK	chr2	29446377	-
intron-intron	ENST00000609205	ENST00000431873		ChiTaRS3.1			AF295356	MSN	chrX	64958479	+	ALK	chr2	29446377	-
intron-intron	ENST00000609205	ENST00000498037		ChiTaRS3.1			AF295356	MSN	chrX	64958479	+	ALK	chr2	29446377	-
Frame-shit	ENST00000360270	ENST00000389048		ChiTaRS3.1			AF295356	MSN	chrX	64958479	+	ALK	chr2	29446377	-
5CDS-intron	ENST00000360270	ENST00000431873		ChiTaRS3.1			AF295356	MSN	chrX	64958479	+	ALK	chr2	29446377	-
5CDS-intron	ENST00000360270	ENST00000498037		ChiTaRS3.1			AF295356	MSN	chrX	64958479	+	ALK	chr2	29446377	-
intron-intron	ENST00000465878	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000465878	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000465878	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000465878	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000465878	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000465878	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000379655	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000379655	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000379655	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000379655	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000379655	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000379655	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000445690	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000445690	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000445690	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000445690	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000445690	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000445690	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
5CDS-intron	ENST00000421376	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
5CDS-intron	ENST00000421376	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
5CDS-3UTR	ENST00000421376	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
5CDS-3UTR	ENST00000421376	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
5CDS-intron	ENST00000421376	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
5CDS-intron	ENST00000421376	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000541240	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000541240	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000541240	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000541240	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000541240	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000541240	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000540079	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000540079	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000540079	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000540079	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000540079	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000540079	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000543930	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000543930	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000543930	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000543930	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000543930	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000543930	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000562903	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000562903	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000562903	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000562903	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000562903	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000562903	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000539578	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000539578	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000539578	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000539578	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000539578	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000539578	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000566975	ENST00000504734		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000566975	ENST00000415618		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000566975	ENST00000452673		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3UTR	ENST00000566975	ENST00000247461		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000566975	ENST00000512607		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-intron	ENST00000566975	ENST00000503126		ChiTaRS3.1			BM726297	KIFC3	chr16	57792333	-	CANX	chr5	179157500	+
intron-3CDS	ENST00000319622	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000319622	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000319622	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000319622	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000565184	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000565184	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000565184	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000565184	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000389093	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000389093	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000389093	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000389093	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000335181	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000335181	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000335181	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000335181	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000568883	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000568883	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000568883	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000568883	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000449901	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000449901	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000449901	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000449901	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000565154	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000565154	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000565154	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000565154	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000568459	ENST00000254108		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000568459	ENST00000380244		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-3CDS	ENST00000568459	ENST00000568685		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
intron-intron	ENST00000568459	ENST00000474990		ChiTaRS3.1			BQ324461	PKM	chr15	72502156	-	FUS	chr16	31195543	+
5CDS-intron	ENST00000595962	ENST00000253039		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
5CDS-intron	ENST00000595962	ENST00000460032		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
intron-intron	ENST00000334564	ENST00000253039		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
intron-intron	ENST00000334564	ENST00000460032		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
intron-intron	ENST00000490272	ENST00000253039		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
intron-intron	ENST00000490272	ENST00000460032		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
5CDS-intron	ENST00000335090	ENST00000253039		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
5CDS-intron	ENST00000335090	ENST00000460032		ChiTaRS3.1			CB131978	ZNF480	chr19	52819154	-	EIF2S3	chrX	24096214	+
5CDS-3UTR	ENST00000377795	ENST00000338086		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000377795	ENST00000319801		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000377795	ENST00000361078		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000377795	ENST00000536417		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000377795	ENST00000403432		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000377795	ENST00000420234		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000353334	ENST00000338086		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000353334	ENST00000319801		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000353334	ENST00000361078		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000353334	ENST00000536417		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000353334	ENST00000403432		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000353334	ENST00000420234		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000524315	ENST00000338086		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000524315	ENST00000319801		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000524315	ENST00000361078		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000524315	ENST00000536417		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000524315	ENST00000403432		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000524315	ENST00000420234		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000009530	ENST00000338086		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000009530	ENST00000319801		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-3UTR	ENST00000009530	ENST00000361078		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000009530	ENST00000536417		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000009530	ENST00000403432		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
5CDS-intron	ENST00000009530	ENST00000420234		ChiTaRS3.1			BF830033	CD74	chr5	149785823	-	PUM2	chr2	20449141	-
intron-5UTR	ENST00000267615	ENST00000309295		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000267615	ENST00000529596		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000267615	ENST00000533364		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-5UTR	ENST00000354313	ENST00000309295		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000354313	ENST00000529596		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000354313	ENST00000533364		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-5UTR	ENST00000556603	ENST00000309295		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000556603	ENST00000529596		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000556603	ENST00000533364		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-5UTR	ENST00000555495	ENST00000309295		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000555495	ENST00000529596		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000555495	ENST00000533364		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-5UTR	ENST00000556954	ENST00000309295		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000556954	ENST00000529596		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
intron-intron	ENST00000556954	ENST00000533364		ChiTaRS3.1			BC083510	ITPK1	chr14	93406109	-	EHBP1L1	chr11	65343564	+
3UTR-3CDS	ENST00000280557	ENST00000578921		ChiTaRS3.1			BF923604	DENR	chr12	123254534	+	RAB31	chr18	9775283	+
3UTR-intron	ENST00000280557	ENST00000577284		ChiTaRS3.1			BF923604	DENR	chr12	123254534	+	RAB31	chr18	9775283	+
3UTR-3CDS	ENST00000455982	ENST00000578921		ChiTaRS3.1			BF923604	DENR	chr12	123254534	+	RAB31	chr18	9775283	+
3UTR-intron	ENST00000455982	ENST00000577284		ChiTaRS3.1			BF923604	DENR	chr12	123254534	+	RAB31	chr18	9775283	+
intron-intron	ENST00000384756	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000364799	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000384693	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000383926	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000516331	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000384706	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000363981	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
5CDS-intron	ENST00000384147	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000365607	ENST00000443617		ChiTaRS3.1			BX486938	SNHG1	chr11	62622765	-	HERC1	chr15	63902730	-
intron-intron	ENST00000483485	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000483485	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000483485	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000483485	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000483485	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000483485	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000483485	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377759	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000377768	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606557	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000606602	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000481323	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000493599		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000372227		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000372229		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000372230		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000243896		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000317734		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-intron	ENST00000486039	ENST00000543605		ChiTaRS3.1			DA789110	SNX5	chr20	17943351	-	SLC35C2	chr20	44993053	-
intron-3UTR	ENST00000488813	ENST00000263097		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000488813	ENST00000606983		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000488813	ENST00000348419		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000488813	ENST00000565096		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000488813	ENST00000562958		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000395879	ENST00000263097		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000395879	ENST00000606983		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000395879	ENST00000348419		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000395879	ENST00000565096		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000395879	ENST00000562958		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000395880	ENST00000263097		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000395880	ENST00000606983		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000395880	ENST00000348419		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000395880	ENST00000565096		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000395880	ENST00000562958		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000310564	ENST00000263097		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000310564	ENST00000606983		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000310564	ENST00000348419		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000310564	ENST00000565096		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000310564	ENST00000562958		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000223336	ENST00000263097		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000223336	ENST00000606983		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-3UTR	ENST00000223336	ENST00000348419		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000223336	ENST00000565096		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-intron	ENST00000223336	ENST00000562958		ChiTaRS3.1			AK124008	COA1	chr7	43678423	-	CNN2	chr19	1038776	+
intron-5UTR	ENST00000239231	ENST00000319622		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000239231	ENST00000565184		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000239231	ENST00000389093		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000239231	ENST00000335181		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000239231	ENST00000568883		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000239231	ENST00000449901		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000239231	ENST00000565154		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000239231	ENST00000568459		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000520504	ENST00000319622		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000520504	ENST00000565184		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000520504	ENST00000389093		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000520504	ENST00000335181		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000520504	ENST00000568883		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000520504	ENST00000449901		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000520504	ENST00000565154		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-intron	ENST00000520504	ENST00000568459		ChiTaRS3.1			AU125105	PANK3	chr5	167977673	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000023939	ENST00000316448		ChiTaRS3.1			BC072002	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000395881	ENST00000316448		ChiTaRS3.1			BC072002	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000357348	ENST00000316448		ChiTaRS3.1			BC072002	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000484084	ENST00000316448		ChiTaRS3.1			BC072002	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000435342	ENST00000316448		ChiTaRS3.1			BC072002	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-3UTR	ENST00000262948	ENST00000534336		ChiTaRS3.1			W37336	MAP2K2	chr19	4090373	+	MALAT1	chr11	65270874	-
intron-3UTR	ENST00000394867	ENST00000534336		ChiTaRS3.1			W37336	MAP2K2	chr19	4090373	+	MALAT1	chr11	65270874	-
intron-3UTR	ENST00000599345	ENST00000534336		ChiTaRS3.1			W37336	MAP2K2	chr19	4090373	+	MALAT1	chr11	65270874	-
5UTR-3UTR	ENST00000598188	ENST00000534336		ChiTaRS3.1			DW413863	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000359435	ENST00000534336		ChiTaRS3.1			DW413863	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000447614	ENST00000534336		ChiTaRS3.1			DW413863	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
intron-3UTR	ENST00000601043	ENST00000534336		ChiTaRS3.1			DW413863	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
3UTR-3UTR	ENST00000448635	ENST00000534336		ChiTaRS3.1			DW413863	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5UTR-3UTR	ENST00000595632	ENST00000534336		ChiTaRS3.1			DW413863	BABAM1	chr19	17378339	+	MALAT1	chr11	65266978	+
5CDS-3UTR	ENST00000321728	ENST00000293760		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
5CDS-intron	ENST00000321728	ENST00000508327		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
5CDS-intron	ENST00000321728	ENST00000502643		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
5CDS-3UTR	ENST00000303531	ENST00000293760		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
5CDS-intron	ENST00000303531	ENST00000508327		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
5CDS-intron	ENST00000303531	ENST00000502643		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
3UTR-3UTR	ENST00000482000	ENST00000293760		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
3UTR-intron	ENST00000482000	ENST00000508327		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
3UTR-intron	ENST00000482000	ENST00000502643		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
intron-3UTR	ENST00000498058	ENST00000293760		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
intron-intron	ENST00000498058	ENST00000508327		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
intron-intron	ENST00000498058	ENST00000502643		ChiTaRS3.1			AA643921	PRKCB	chr16	24104212	+	LEMD2	chr6	33739276	-
intron-3UTR	ENST00000378251	ENST00000373586		ChiTaRS3.1			AA032022	LRRC47	chr1	3697481	-	EIF3I	chr1	32697002	+
intron-intron	ENST00000378251	ENST00000471486		ChiTaRS3.1			AA032022	LRRC47	chr1	3697481	-	EIF3I	chr1	32697002	+
In-frame	ENST00000332050	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332050	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332050	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332050	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000379079		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000332351		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000530998		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000448076		ChiTaRS3.1			S74529	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
intron-3CDS	ENST00000409068	ENST00000402685		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000409068	ENST00000539469		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000409068	ENST00000298919		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000409085	ENST00000402685		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000409085	ENST00000539469		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000409085	ENST00000298919		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000406297	ENST00000402685		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000406297	ENST00000539469		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000406297	ENST00000298919		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000470281	ENST00000402685		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000470281	ENST00000539469		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
intron-3CDS	ENST00000470281	ENST00000298919		ChiTaRS3.1			BF944461	AAK1	chr2	69748006	-	PDZRN4	chr12	41966915	+
5CDS-intron	ENST00000320912	ENST00000297056		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000425398		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-5UTR	ENST00000320912	ENST00000436575		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000428902		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000421761		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000479922		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000297056		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000425398		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-5UTR	ENST00000507420	ENST00000436575		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000428902		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000421761		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000479922		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000297056		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000425398		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-5UTR	ENST00000382581	ENST00000436575		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000428902		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000421761		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000479922		ChiTaRS3.1			BC014568	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
intron-3UTR	ENST00000367142	ENST00000269967		ChiTaRS3.1			AW733023	NUCKS1	chr1	205719196	-	CCDC97	chr19	41829181	+
intron-3UTR	ENST00000464938	ENST00000269967		ChiTaRS3.1			AW733023	NUCKS1	chr1	205719196	-	CCDC97	chr19	41829181	+
5CDS-5UTR	ENST00000303635	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000303635	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-intron	ENST00000303635	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000303635	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000439411	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000439411	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-intron	ENST00000439411	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000439411	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
3UTR-5UTR	ENST00000476163	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
3UTR-5UTR	ENST00000476163	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
3UTR-intron	ENST00000476163	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
3UTR-5UTR	ENST00000476163	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000557126	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000557126	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-intron	ENST00000557126	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000557126	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000473578	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000473578	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-intron	ENST00000473578	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000473578	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000467404	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000467404	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-intron	ENST00000467404	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
5CDS-5UTR	ENST00000467404	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
intron-5UTR	ENST00000476864	ENST00000474874		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
intron-5UTR	ENST00000476864	ENST00000377482		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
intron-intron	ENST00000476864	ENST00000467067		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
intron-5UTR	ENST00000476864	ENST00000469499		ChiTaRS3.1			BF348299	CAMTA1	chr1	6885271	+	ERRFI1	chr1	8075754	-
intron-3CDS	ENST00000464611	ENST00000216254		ChiTaRS3.1			DA891854	ACTB	chr7	5568907	-	ACO2	chr22	41903933	+
intron-3CDS	ENST00000464611	ENST00000396512		ChiTaRS3.1			DA891854	ACTB	chr7	5568907	-	ACO2	chr22	41903933	+
intron-intron	ENST00000464611	ENST00000466237		ChiTaRS3.1			DA891854	ACTB	chr7	5568907	-	ACO2	chr22	41903933	+
intron-3CDS	ENST00000331789	ENST00000216254		ChiTaRS3.1			DA891854	ACTB	chr7	5568907	-	ACO2	chr22	41903933	+
intron-3CDS	ENST00000331789	ENST00000396512		ChiTaRS3.1			DA891854	ACTB	chr7	5568907	-	ACO2	chr22	41903933	+
intron-intron	ENST00000331789	ENST00000466237		ChiTaRS3.1			DA891854	ACTB	chr7	5568907	-	ACO2	chr22	41903933	+
3UTR-intron	ENST00000374050	ENST00000548589		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
3UTR-intron	ENST00000374050	ENST00000552699		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
3UTR-3UTR	ENST00000374050	ENST00000267115		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
3UTR-intron	ENST00000374050	ENST00000549385		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
3UTR-3UTR	ENST00000374050	ENST00000423828		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
3UTR-intron	ENST00000374050	ENST00000395006		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
3UTR-intron	ENST00000374050	ENST00000547798		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-intron	ENST00000473413	ENST00000548589		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-intron	ENST00000473413	ENST00000552699		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-3UTR	ENST00000473413	ENST00000267115		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-intron	ENST00000473413	ENST00000549385		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-3UTR	ENST00000473413	ENST00000423828		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-intron	ENST00000473413	ENST00000395006		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-intron	ENST00000473413	ENST00000547798		ChiTaRS3.1			BP304847	ATP6V1G1	chr9	117360349	+	TMBIM6	chr12	50158562	+
intron-3CDS	ENST00000233616	ENST00000335295		ChiTaRS3.1			BF899407	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000452063	ENST00000335295		ChiTaRS3.1			BF899407	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000409065	ENST00000335295		ChiTaRS3.1			BF899407	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000462443	ENST00000335295		ChiTaRS3.1			BF899407	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000535045	ENST00000335295		ChiTaRS3.1			BF899407	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000464611	ENST00000346916		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000464611	ENST00000545507		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000464611	ENST00000333511		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000464611	ENST00000353555		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-intron	ENST00000464611	ENST00000574970		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000331789	ENST00000346916		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000331789	ENST00000545507		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000331789	ENST00000333511		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3CDS	ENST00000331789	ENST00000353555		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-intron	ENST00000331789	ENST00000574970		ChiTaRS3.1			BP379102	ACTB	chr7	5568820	-	BSG	chr19	580716	+
intron-3UTR	ENST00000470422	ENST00000272638		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000470422	ENST00000490163		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000246043	ENST00000272638		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000246043	ENST00000490163		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000377813	ENST00000272638		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000377813	ENST00000490163		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000377807	ENST00000272638		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000377807	ENST00000490163		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000360807	ENST00000272638		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000360807	ENST00000490163		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000455029	ENST00000272638		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
intron-3UTR	ENST00000455029	ENST00000490163		ChiTaRS3.1			AA429648	RRBP1	chr20	17594380	+	UBXN4	chr2	136541303	-
In-frame	ENST00000504570	ENST00000368508		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
In-frame	ENST00000504570	ENST00000368507		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
In-frame	ENST00000382051	ENST00000368508		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
In-frame	ENST00000382051	ENST00000368507		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
In-frame	ENST00000503434	ENST00000368508		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
In-frame	ENST00000503434	ENST00000368507		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
intron-3CDS	ENST00000510033	ENST00000368508		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
intron-3CDS	ENST00000510033	ENST00000368507		ChiTaRS3.1			EU236946	SLC34A2	chr4	25665952	+	ROS1	chr6	117650611	-
3UTR-3CDS	ENST00000377604	ENST00000536769		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000377604	ENST00000538617		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000377604	ENST00000546120		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000377604	ENST00000339647		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000377604	ENST00000536661		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-3CDS	ENST00000329236	ENST00000536769		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000329236	ENST00000538617		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000329236	ENST00000546120		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000329236	ENST00000339647		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000329236	ENST00000536661		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-3CDS	ENST00000345781	ENST00000536769		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000345781	ENST00000538617		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000345781	ENST00000546120		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000345781	ENST00000339647		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
3UTR-intron	ENST00000345781	ENST00000536661		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
intron-3CDS	ENST00000478410	ENST00000536769		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
intron-intron	ENST00000478410	ENST00000538617		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
intron-intron	ENST00000478410	ENST00000546120		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
intron-intron	ENST00000478410	ENST00000339647		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
intron-intron	ENST00000478410	ENST00000536661		ChiTaRS3.1			BQ010117	RBM10	chrX	47046057	-	UBC	chr12	125396757	+
intron-intron	ENST00000418109	ENST00000313899		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000418109	ENST00000353341		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000418109	ENST00000543098		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000418109	ENST00000352301		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000418109	ENST00000508119		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000418109	ENST00000541060		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000305544	ENST00000313899		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000305544	ENST00000353341		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000305544	ENST00000543098		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000305544	ENST00000352301		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000305544	ENST00000508119		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000305544	ENST00000541060		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000464891	ENST00000313899		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000464891	ENST00000353341		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000464891	ENST00000543098		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000464891	ENST00000352301		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000464891	ENST00000508119		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-intron	ENST00000464891	ENST00000541060		ChiTaRS3.1			AA010774	LAMB2	chr3	49162488	-	HNRNPD	chr4	83275343	-
intron-3UTR	ENST00000371348	ENST00000331222		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371348	ENST00000523237		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000371344	ENST00000331222		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371344	ENST00000523237		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000234831	ENST00000331222		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000234831	ENST00000523237		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000371341	ENST00000331222		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371341	ENST00000523237		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000470395	ENST00000331222		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000470395	ENST00000523237		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000371337	ENST00000331222		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371337	ENST00000523237		ChiTaRS3.1			AA368225	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			EF423615	BCR	chr22	23631779	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			EF423615	BCR	chr22	23631779	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EF423615	BCR	chr22	23631779	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EF423615	BCR	chr22	23631779	+	ABL1	chr9	133729451	+
3UTR-3UTR	ENST00000251412	ENST00000264071		ChiTaRS3.1			AW953448	TUBG2	chr17	40818876	+	TUBB4A	chr19	6494721	-
3UTR-3UTR	ENST00000251412	ENST00000540257		ChiTaRS3.1			AW953448	TUBG2	chr17	40818876	+	TUBB4A	chr19	6494721	-
3UTR-intron	ENST00000251412	ENST00000601152		ChiTaRS3.1			AW953448	TUBG2	chr17	40818876	+	TUBB4A	chr19	6494721	-
3UTR-intron	ENST00000251412	ENST00000598006		ChiTaRS3.1			AW953448	TUBG2	chr17	40818876	+	TUBB4A	chr19	6494721	-
3UTR-intron	ENST00000251412	ENST00000596926		ChiTaRS3.1			AW953448	TUBG2	chr17	40818876	+	TUBB4A	chr19	6494721	-
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF333323	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000535112	ENST00000162330		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-3CDS	ENST00000535112	ENST00000546196		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000566982		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000393422		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000535626		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000538440		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000418647		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000542031		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000420641		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000535112	ENST00000393420		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-3CDS	ENST00000396076	ENST00000162330		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-3CDS	ENST00000396076	ENST00000546196		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000566982		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000393422		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000535626		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000538440		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000418647		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000542031		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000420641		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000396076	ENST00000393420		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-3CDS	ENST00000350669	ENST00000162330		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-3CDS	ENST00000350669	ENST00000546196		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000566982		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000393422		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000535626		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000538440		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000418647		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000542031		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000420641		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
intron-intron	ENST00000350669	ENST00000393420		ChiTaRS3.1			BM819257	LDHB	chr12	21790012	-	BCAR1	chr16	75276912	-
3UTR-3UTR	ENST00000534336	ENST00000352456		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-3UTR	ENST00000534336	ENST00000595018		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-3UTR	ENST00000534336	ENST00000392006		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-3UTR	ENST00000534336	ENST00000378215		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-3UTR	ENST00000534336	ENST00000602130		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-3UTR	ENST00000534336	ENST00000593587		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-3UTR	ENST00000534336	ENST00000263367		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
3UTR-intron	ENST00000534336	ENST00000594207		ChiTaRS3.1			AV757323	MALAT1	chr11	65267891	+	HNRNPUL1	chr19	41812660	+
In-frame	ENST00000517671	ENST00000254066		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000517671	ENST00000394089		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000517671	ENST00000425707		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000517671	ENST00000394086		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000517671	ENST00000394081		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000517671	ENST00000420042		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000296930	ENST00000254066		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000296930	ENST00000394089		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000296930	ENST00000425707		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000296930	ENST00000394086		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000296930	ENST00000394081		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000296930	ENST00000420042		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000351986	ENST00000254066		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000351986	ENST00000394089		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000351986	ENST00000425707		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000351986	ENST00000394086		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000351986	ENST00000394081		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000351986	ENST00000420042		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000393820	ENST00000254066		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
In-frame	ENST00000393820	ENST00000394089		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000393820	ENST00000425707		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000393820	ENST00000394086		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000393820	ENST00000394081		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
5CDS-intron	ENST00000393820	ENST00000420042		ChiTaRS3.1			U41743	NPM1	chr5	170818803	+	RARA	chr17	38504565	+
intron-3UTR	ENST00000248984	ENST00000396613		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-intron	ENST00000248984	ENST00000377959		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000248984	ENST00000377960		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000248984	ENST00000474050		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000543051	ENST00000396613		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-intron	ENST00000543051	ENST00000377959		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000543051	ENST00000377960		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000543051	ENST00000474050		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000486651	ENST00000396613		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-intron	ENST00000486651	ENST00000377959		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000486651	ENST00000377960		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3UTR	ENST00000486651	ENST00000474050		ChiTaRS3.1			BF969911	C22orf24	chr22	32352253	+	GLIPR2	chr9	36163705	+
intron-3CDS	ENST00000560410	ENST00000520552		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000335659		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519597		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000520311		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519316		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000560410	ENST00000524319		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520552		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000335659		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519597		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520311		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519316		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000216802	ENST00000524319		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520552		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000335659		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519597		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520311		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519316		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000471700	ENST00000524319		ChiTaRS3.1			AV652105	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
Frame-shit	ENST00000406337	ENST00000262367		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
Frame-shit	ENST00000406337	ENST00000382070		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
Frame-shit	ENST00000265713	ENST00000262367		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
Frame-shit	ENST00000265713	ENST00000382070		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
Frame-shit	ENST00000396930	ENST00000262367		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
Frame-shit	ENST00000396930	ENST00000382070		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
intron-3CDS	ENST00000485568	ENST00000262367		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
intron-3CDS	ENST00000485568	ENST00000382070		ChiTaRS3.1			AJ251844	KAT6A	chr8	41794774	-	CREBBP	chr16	3860781	-
intron-3CDS	ENST00000282120	ENST00000368069		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000282120	ENST00000241704		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000377386	ENST00000368069		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000377386	ENST00000241704		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000398263	ENST00000368069		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000398263	ENST00000241704		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000409232	ENST00000368069		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000409232	ENST00000241704		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000409015	ENST00000368069		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000409015	ENST00000241704		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000444342	ENST00000368069		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3CDS	ENST00000444342	ENST00000241704		ChiTaRS3.1			CD692127	TGOLN2	chr2	85549330	-	COPA	chr1	160260003	-
intron-3UTR	ENST00000370828	ENST00000267953		ChiTaRS3.1			BP296794	GPC4	chrX	132435219	-	BCL2A1	chr15	80253299	-
intron-3UTR	ENST00000370828	ENST00000335661		ChiTaRS3.1			BP296794	GPC4	chrX	132435219	-	BCL2A1	chr15	80253299	-
intron-3UTR	ENST00000535467	ENST00000267953		ChiTaRS3.1			BP296794	GPC4	chrX	132435219	-	BCL2A1	chr15	80253299	-
intron-3UTR	ENST00000535467	ENST00000335661		ChiTaRS3.1			BP296794	GPC4	chrX	132435219	-	BCL2A1	chr15	80253299	-
intron-3CDS	ENST00000390168	ENST00000575752		ChiTaRS3.1			AI089195	H19	chr11	2016467	+	ZNF174	chr16	3452055	-
intron-3CDS	ENST00000390168	ENST00000571936		ChiTaRS3.1			AI089195	H19	chr11	2016467	+	ZNF174	chr16	3452055	-
intron-3CDS	ENST00000390168	ENST00000344823		ChiTaRS3.1			AI089195	H19	chr11	2016467	+	ZNF174	chr16	3452055	-
intron-3CDS	ENST00000390168	ENST00000268655		ChiTaRS3.1			AI089195	H19	chr11	2016467	+	ZNF174	chr16	3452055	-
intron-3CDS	ENST00000390168	ENST00000572544		ChiTaRS3.1			AI089195	H19	chr11	2016467	+	ZNF174	chr16	3452055	-
intron-3CDS	ENST00000215832	ENST00000296292		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000215832	ENST00000394738		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000398822	ENST00000296292		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000398822	ENST00000394738		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000544786	ENST00000296292		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000544786	ENST00000394738		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000491588	ENST00000296292		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000491588	ENST00000394738		ChiTaRS3.1			AW376334	MAPK1	chr22	22116989	-	RFT1	chr3	53133502	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM491359	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM491359	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM491359	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM491359	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
3UTR-3UTR	ENST00000276603	ENST00000228506		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000412616		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000535413		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3UTR	ENST00000276602	ENST00000228506		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000412616		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000535413		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000520783	ENST00000228506		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000412616		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000535413		ChiTaRS3.1			BE550278	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
In-frame	ENST00000328194	ENST00000299492		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000328194	ENST00000533792		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000328194	ENST00000528883		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000328194	ENST00000530181		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
5CDS-intron	ENST00000328194	ENST00000530582		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000530044	ENST00000299492		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000530044	ENST00000533792		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000530044	ENST00000528883		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
In-frame	ENST00000530044	ENST00000530181		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
5CDS-intron	ENST00000530044	ENST00000530582		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000527700	ENST00000299492		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000527700	ENST00000533792		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000527700	ENST00000528883		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000527700	ENST00000530181		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-intron	ENST00000527700	ENST00000530582		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000526523	ENST00000299492		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000526523	ENST00000533792		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000526523	ENST00000528883		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-3CDS	ENST00000526523	ENST00000530181		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
intron-intron	ENST00000526523	ENST00000530582		ChiTaRS3.1			BI669204	DENND5A	chr11	9286507	-	PPFIBP2	chr11	7631521	+
Frame-shit	ENST00000609104	ENST00000315266		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
Frame-shit	ENST00000609104	ENST00000478722		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
5CDS-intron	ENST00000609104	ENST00000459628		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
5CDS-intron	ENST00000609104	ENST00000543237		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
5CDS-intron	ENST00000609104	ENST00000305960		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
5CDS-3UTR	ENST00000609104	ENST00000544752		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000277575	ENST00000315266		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000277575	ENST00000478722		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000277575	ENST00000459628		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000277575	ENST00000543237		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000277575	ENST00000305960		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3UTR	ENST00000277575	ENST00000544752		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000379237	ENST00000315266		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000379237	ENST00000478722		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000379237	ENST00000459628		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000379237	ENST00000543237		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000379237	ENST00000305960		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3UTR	ENST00000379237	ENST00000544752		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000443016	ENST00000315266		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000443016	ENST00000478722		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000443016	ENST00000459628		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000443016	ENST00000543237		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000443016	ENST00000305960		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3UTR	ENST00000443016	ENST00000544752		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000609853	ENST00000315266		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000609853	ENST00000478722		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000609853	ENST00000459628		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000609853	ENST00000543237		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-intron	ENST00000609853	ENST00000305960		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3UTR	ENST00000609853	ENST00000544752		ChiTaRS3.1			DB087988	USP6NL	chr10	11639629	-	GPHN	chr14	67291192	+
intron-3CDS	ENST00000347370	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000347370	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000347370	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000347370	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000347370	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000349431	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000349431	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000349431	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000349431	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000349431	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000339385	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000339385	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000339385	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000339385	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000339385	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000348298	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000348298	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000348298	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000348298	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000348298	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000400929	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000400929	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000400929	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000400929	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000400929	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000360466	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000360466	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000360466	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000360466	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000360466	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000400930	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000400930	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000400930	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000400930	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000400930	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000491779	ENST00000439590		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-3CDS	ENST00000491779	ENST00000311111		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000491779	ENST00000584577		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000491779	ENST00000534490		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
intron-intron	ENST00000491779	ENST00000533498		ChiTaRS3.1			AK075017	UBE2J2	chr1	1189857	-	RPL38	chr17	72205942	+
3UTR-intron	ENST00000373202	ENST00000238256		ChiTaRS3.1			CA424723	SGPL1	chr10	72639153	-	FKBP15	chr9	116022855	-
3UTR-intron	ENST00000373202	ENST00000493847		ChiTaRS3.1			CA424723	SGPL1	chr10	72639153	-	FKBP15	chr9	116022855	-
intron-intron	ENST00000486993	ENST00000238256		ChiTaRS3.1			CA424723	SGPL1	chr10	72639153	-	FKBP15	chr9	116022855	-
intron-intron	ENST00000486993	ENST00000493847		ChiTaRS3.1			CA424723	SGPL1	chr10	72639153	-	FKBP15	chr9	116022855	-
Frame-shit	ENST00000379471	ENST00000600490		ChiTaRS3.1			BG700433	NOL6	chr9	33473792	-	TMEM59L	chr19	18729254	+
Frame-shit	ENST00000379471	ENST00000262817		ChiTaRS3.1			BG700433	NOL6	chr9	33473792	-	TMEM59L	chr19	18729254	+
5UTR-3CDS	ENST00000464829	ENST00000600490		ChiTaRS3.1			BG700433	NOL6	chr9	33473792	-	TMEM59L	chr19	18729254	+
5UTR-3CDS	ENST00000464829	ENST00000262817		ChiTaRS3.1			BG700433	NOL6	chr9	33473792	-	TMEM59L	chr19	18729254	+
Frame-shit	ENST00000455041	ENST00000600490		ChiTaRS3.1			BG700433	NOL6	chr9	33473792	-	TMEM59L	chr19	18729254	+
Frame-shit	ENST00000455041	ENST00000262817		ChiTaRS3.1			BG700433	NOL6	chr9	33473792	-	TMEM59L	chr19	18729254	+
intron-3CDS	ENST00000311371	ENST00000163416		ChiTaRS3.1			AI917322	SOX30	chr5	157065298	+	GOLGA5	chr14	93263922	-
intron-3CDS	ENST00000311371	ENST00000355976		ChiTaRS3.1			AI917322	SOX30	chr5	157065298	+	GOLGA5	chr14	93263922	-
intron-3CDS	ENST00000265007	ENST00000163416		ChiTaRS3.1			AI917322	SOX30	chr5	157065298	+	GOLGA5	chr14	93263922	-
intron-3CDS	ENST00000265007	ENST00000355976		ChiTaRS3.1			AI917322	SOX30	chr5	157065298	+	GOLGA5	chr14	93263922	-
intron-3CDS	ENST00000519442	ENST00000163416		ChiTaRS3.1			AI917322	SOX30	chr5	157065298	+	GOLGA5	chr14	93263922	-
intron-3CDS	ENST00000519442	ENST00000355976		ChiTaRS3.1			AI917322	SOX30	chr5	157065298	+	GOLGA5	chr14	93263922	-
intron-3CDS	ENST00000371989	ENST00000216254		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000371989	ENST00000396512		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-intron	ENST00000371989	ENST00000466237		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000485435	ENST00000216254		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000485435	ENST00000396512		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-intron	ENST00000485435	ENST00000466237		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000545297	ENST00000216254		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000545297	ENST00000396512		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-intron	ENST00000545297	ENST00000466237		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000467910	ENST00000216254		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000467910	ENST00000396512		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-intron	ENST00000467910	ENST00000466237		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000371991	ENST00000216254		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000371991	ENST00000396512		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-intron	ENST00000371991	ENST00000466237		ChiTaRS3.1			DA577703	SURF4	chr9	136242836	-	ACO2	chr22	41921254	+
intron-3CDS	ENST00000395573	ENST00000306125		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000395573	ENST00000414533		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000395573	ENST00000470225		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000395573	ENST00000420147		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000216416	ENST00000306125		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000216416	ENST00000414533		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000216416	ENST00000470225		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000216416	ENST00000420147		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000553660	ENST00000306125		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000553660	ENST00000414533		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000553660	ENST00000470225		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000553660	ENST00000420147		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000557690	ENST00000306125		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000557690	ENST00000414533		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000557690	ENST00000470225		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000557690	ENST00000420147		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000556113	ENST00000306125		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000556113	ENST00000414533		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000556113	ENST00000470225		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-intron	ENST00000556113	ENST00000420147		ChiTaRS3.1			CA487373	CNIH1	chr14	54894325	-	QARS	chr3	49136398	-
intron-3CDS	ENST00000379251	ENST00000414242		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-3CDS	ENST00000379251	ENST00000361479		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-intron	ENST00000379251	ENST00000496525		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-3CDS	ENST00000379253	ENST00000414242		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-3CDS	ENST00000379253	ENST00000361479		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-intron	ENST00000379253	ENST00000496525		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
Frame-shit	ENST00000379254	ENST00000414242		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
Frame-shit	ENST00000379254	ENST00000361479		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
5CDS-intron	ENST00000379254	ENST00000496525		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
In-frame	ENST00000379270	ENST00000414242		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
In-frame	ENST00000379270	ENST00000361479		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
5CDS-intron	ENST00000379270	ENST00000496525		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-3CDS	ENST00000489394	ENST00000414242		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-3CDS	ENST00000489394	ENST00000361479		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-intron	ENST00000489394	ENST00000496525		ChiTaRS3.1			CA848235	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-intron	ENST00000229270	ENST00000420083		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000229270	ENST00000449870		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000229270	ENST00000318511		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000229270	ENST00000407004		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000229270	ENST00000589998		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000229270	ENST00000250241		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000229270	ENST00000592763		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000229270	ENST00000588657		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000229270	ENST00000590261		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000229270	ENST00000586544		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000420083		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000396705	ENST00000449870		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000396705	ENST00000318511		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000407004		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000589998		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000250241		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000592763		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000588657		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000396705	ENST00000590261		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000396705	ENST00000586544		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000420083		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-3UTR	ENST00000488464	ENST00000449870		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-3UTR	ENST00000488464	ENST00000318511		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000407004		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000589998		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000250241		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000592763		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000588657		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-intron	ENST00000488464	ENST00000590261		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
intron-3UTR	ENST00000488464	ENST00000586544		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000420083		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000535434	ENST00000449870		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000535434	ENST00000318511		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000407004		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000589998		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000250241		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000592763		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000588657		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-intron	ENST00000535434	ENST00000590261		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3UTR	ENST00000535434	ENST00000586544		ChiTaRS3.1			CA431273	TPI1	chr12	6979822	-	ILF3	chr19	10802067	-
3UTR-3CDS	ENST00000521913	ENST00000410022		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000521913	ENST00000471185		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000521913	ENST00000303698		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000521913	ENST00000394305		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000521913	ENST00000462320		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-3CDS	ENST00000311151	ENST00000410022		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000311151	ENST00000471185		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000311151	ENST00000303698		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000311151	ENST00000394305		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
3UTR-5UTR	ENST00000311151	ENST00000462320		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-3CDS	ENST00000523027	ENST00000410022		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000523027	ENST00000471185		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000523027	ENST00000303698		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000523027	ENST00000394305		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000523027	ENST00000462320		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-3CDS	ENST00000521983	ENST00000410022		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000521983	ENST00000471185		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000521983	ENST00000303698		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000521983	ENST00000394305		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-5UTR	ENST00000521983	ENST00000462320		ChiTaRS3.1			BP350453	DPYSL2	chr8	26514277	+	NFU1	chr2	69642390	-
intron-intron	ENST00000338086	ENST00000595125		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3UTR	ENST00000338086	ENST00000423777		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000338086	ENST00000600336		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000319801	ENST00000595125		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3UTR	ENST00000319801	ENST00000423777		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000319801	ENST00000600336		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000361078	ENST00000595125		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3UTR	ENST00000361078	ENST00000423777		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000361078	ENST00000600336		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000536417	ENST00000595125		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3UTR	ENST00000536417	ENST00000423777		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000536417	ENST00000600336		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000403432	ENST00000595125		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3UTR	ENST00000403432	ENST00000423777		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000403432	ENST00000600336		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000420234	ENST00000595125		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3UTR	ENST00000420234	ENST00000423777		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-intron	ENST00000420234	ENST00000600336		ChiTaRS3.1			BE708509	PUM2	chr2	20450480	-	ATF5	chr19	50436873	+
intron-3CDS	ENST00000411780	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000411780	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000411780	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000411780	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000411780	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397137	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397137	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397137	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397137	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397137	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000373537	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000373537	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000373537	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000373537	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000373537	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000414542	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000414542	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000414542	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000414542	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000414542	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397135	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397135	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397135	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397135	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397135	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397134	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397134	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397134	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397134	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397134	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397131	ENST00000389413		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397131	ENST00000409483		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397131	ENST00000389416		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397131	ENST00000389418		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
intron-3CDS	ENST00000397131	ENST00000404321		ChiTaRS3.1			DA346166	BLCAP	chr20	36149805	+	PTPRN2	chr7	157388013	-
5CDS-3UTR	ENST00000263645	ENST00000558401		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000263645	ENST00000559916		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000263645	ENST00000544417		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000263645	ENST00000559220		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000492627	ENST00000558401		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000492627	ENST00000559916		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000492627	ENST00000544417		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000492627	ENST00000559220		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000381036	ENST00000558401		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000381036	ENST00000559916		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000381036	ENST00000544417		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000381036	ENST00000559220		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000526072	ENST00000558401		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000526072	ENST00000559916		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000526072	ENST00000544417		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000526072	ENST00000559220		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
intron-3UTR	ENST00000524805	ENST00000558401		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
intron-intron	ENST00000524805	ENST00000559916		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
intron-intron	ENST00000524805	ENST00000544417		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
intron-3UTR	ENST00000524805	ENST00000559220		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000481687	ENST00000558401		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000481687	ENST00000559916		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-intron	ENST00000481687	ENST00000544417		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
5CDS-3UTR	ENST00000481687	ENST00000559220		ChiTaRS3.1			BP430049	CD81	chr11	2417906	+	B2M	chr15	45009838	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ207765	ETV6	chr12	12028545	+	RUNX1	chr21	36421029	-
intron-3UTR	ENST00000390168	ENST00000561743		ChiTaRS3.1			CN398610	H19	chr11	2018692	-	USB1	chr16	58054187	+
intron-3UTR	ENST00000390168	ENST00000219281		ChiTaRS3.1			CN398610	H19	chr11	2018692	-	USB1	chr16	58054187	+
intron-3UTR	ENST00000390168	ENST00000539737		ChiTaRS3.1			CN398610	H19	chr11	2018692	-	USB1	chr16	58054187	+
intron-intron	ENST00000390168	ENST00000423271		ChiTaRS3.1			CN398610	H19	chr11	2018692	-	USB1	chr16	58054187	+
intron-intron	ENST00000390168	ENST00000565662		ChiTaRS3.1			CN398610	H19	chr11	2018692	-	USB1	chr16	58054187	+
intron-intron	ENST00000390168	ENST00000563149		ChiTaRS3.1			CN398610	H19	chr11	2018692	-	USB1	chr16	58054187	+
intron-3CDS	ENST00000345146	ENST00000435275		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000345146	ENST00000440692		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000345146	ENST00000372360		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3UTR	ENST00000345146	ENST00000476545		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3UTR	ENST00000345146	ENST00000360830		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000446179	ENST00000435275		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000446179	ENST00000440692		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000446179	ENST00000372360		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3UTR	ENST00000446179	ENST00000476545		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3UTR	ENST00000446179	ENST00000360830		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000415913	ENST00000435275		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000415913	ENST00000440692		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3CDS	ENST00000415913	ENST00000372360		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3UTR	ENST00000415913	ENST00000476545		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
intron-3UTR	ENST00000415913	ENST00000360830		ChiTaRS3.1			BU153261	IDH1	chr2	209104672	-	RPS24	chr10	79795397	+
In-frame	ENST00000443572	ENST00000502492		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
In-frame	ENST00000443572	ENST00000290330		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
5CDS-intron	ENST00000443572	ENST00000514089		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
In-frame	ENST00000406116	ENST00000502492		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
In-frame	ENST00000406116	ENST00000290330		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
5CDS-intron	ENST00000406116	ENST00000514089		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
In-frame	ENST00000225577	ENST00000502492		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
In-frame	ENST00000225577	ENST00000290330		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
5CDS-intron	ENST00000225577	ENST00000514089		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
5UTR-3CDS	ENST00000393021	ENST00000502492		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
5UTR-3CDS	ENST00000393021	ENST00000290330		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
5UTR-intron	ENST00000393021	ENST00000514089		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
intron-3CDS	ENST00000587061	ENST00000502492		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
intron-3CDS	ENST00000587061	ENST00000290330		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
intron-intron	ENST00000587061	ENST00000514089		ChiTaRS3.1			XX000001	RPS6KB1	chr17	57970687	+	SNF8	chr17	47021338	-
3UTR-3UTR	ENST00000558401	ENST00000558401		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-intron	ENST00000558401	ENST00000559916		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-intron	ENST00000558401	ENST00000544417		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-3UTR	ENST00000558401	ENST00000559220		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-3UTR	ENST00000559916	ENST00000558401		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-intron	ENST00000559916	ENST00000559916		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-intron	ENST00000559916	ENST00000544417		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-3UTR	ENST00000559916	ENST00000559220		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-3UTR	ENST00000544417	ENST00000558401		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-intron	ENST00000544417	ENST00000559916		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-intron	ENST00000544417	ENST00000544417		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
intron-3UTR	ENST00000544417	ENST00000559220		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-3UTR	ENST00000559220	ENST00000558401		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-intron	ENST00000559220	ENST00000559916		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-intron	ENST00000559220	ENST00000544417		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-3UTR	ENST00000559220	ENST00000559220		ChiTaRS3.1			AW088897	B2M	chr15	45010163	-	B2M	chr15	45009838	+
3UTR-3UTR	ENST00000304786	ENST00000445105		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-3UTR	ENST00000304786	ENST00000264730		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-3UTR	ENST00000304786	ENST00000454309		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-intron	ENST00000304786	ENST00000450716		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-intron	ENST00000304786	ENST00000430714		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-intron	ENST00000304786	ENST00000466144		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-3UTR	ENST00000366839	ENST00000445105		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-3UTR	ENST00000366839	ENST00000264730		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-3UTR	ENST00000366839	ENST00000454309		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-intron	ENST00000366839	ENST00000450716		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-intron	ENST00000366839	ENST00000430714		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
3UTR-intron	ENST00000366839	ENST00000466144		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-3UTR	ENST00000366838	ENST00000445105		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-3UTR	ENST00000366838	ENST00000264730		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-3UTR	ENST00000366838	ENST00000454309		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-intron	ENST00000366838	ENST00000450716		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-intron	ENST00000366838	ENST00000430714		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-intron	ENST00000366838	ENST00000466144		ChiTaRS3.1			DB490454	SRP9	chr1	225978111	+	FGF12	chr3	191861591	-
intron-3UTR	ENST00000340748	ENST00000534336		ChiTaRS3.1			AI810847	DNMT1	chr19	10244223	+	MALAT1	chr11	65268199	-
intron-3UTR	ENST00000540357	ENST00000534336		ChiTaRS3.1			AI810847	DNMT1	chr19	10244223	+	MALAT1	chr11	65268199	-
intron-3UTR	ENST00000359526	ENST00000534336		ChiTaRS3.1			AI810847	DNMT1	chr19	10244223	+	MALAT1	chr11	65268199	-
intron-3UTR	ENST00000589538	ENST00000534336		ChiTaRS3.1			AI810847	DNMT1	chr19	10244223	+	MALAT1	chr11	65268199	-
intron-3UTR	ENST00000528498	ENST00000349394		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000528498	ENST00000555154		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000528900	ENST00000349394		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000528900	ENST00000555154		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000405097	ENST00000349394		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000405097	ENST00000555154		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000530301	ENST00000349394		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000530301	ENST00000555154		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000343115	ENST00000349394		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000343115	ENST00000555154		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-3UTR	ENST00000544551	ENST00000349394		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-intron	ENST00000544551	ENST00000555154		ChiTaRS3.1			R77327	RDX	chr11	110104135	-	NXPH4	chr12	57619730	+
intron-3CDS	ENST00000290130	ENST00000318911		ChiTaRS3.1			BM423739	MIS18A	chr21	33642030	-	CYC1	chr8	145151031	+
intron-3CDS	ENST00000486363	ENST00000318911		ChiTaRS3.1			BM423739	MIS18A	chr21	33642030	-	CYC1	chr8	145151031	+
5UTR-intron	ENST00000587708	ENST00000359895		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000587708	ENST00000356618		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000587708	ENST00000355841		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000587708	ENST00000505746		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000587708	ENST00000393551		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-3UTR	ENST00000587708	ENST00000355572		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000591949	ENST00000359895		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000591949	ENST00000356618		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000591949	ENST00000355841		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000591949	ENST00000505746		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000591949	ENST00000393551		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-3UTR	ENST00000591949	ENST00000355572		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000222266	ENST00000359895		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000222266	ENST00000356618		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000222266	ENST00000355841		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000222266	ENST00000505746		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-intron	ENST00000222266	ENST00000393551		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
5UTR-3UTR	ENST00000222266	ENST00000355572		ChiTaRS3.1			DA930054	PSENEN	chr19	36236602	+	PDLIM7	chr5	176917274	-
Frame-shit	ENST00000265062	ENST00000343455		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
Frame-shit	ENST00000265062	ENST00000526495		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
Frame-shit	ENST00000265062	ENST00000393063		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
5CDS-intron	ENST00000265062	ENST00000527416		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
5CDS-intron	ENST00000265062	ENST00000527414		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
5CDS-intron	ENST00000265062	ENST00000556045		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
5CDS-3UTR	ENST00000265062	ENST00000541352		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000482525	ENST00000343455		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000482525	ENST00000526495		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000482525	ENST00000393063		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-intron	ENST00000482525	ENST00000527416		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-intron	ENST00000482525	ENST00000527414		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-intron	ENST00000482525	ENST00000556045		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3UTR	ENST00000482525	ENST00000541352		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000485280	ENST00000343455		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000485280	ENST00000526495		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000485280	ENST00000393063		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-intron	ENST00000485280	ENST00000527416		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-intron	ENST00000485280	ENST00000527414		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-intron	ENST00000485280	ENST00000556045		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3UTR	ENST00000485280	ENST00000541352		ChiTaRS3.1			AI377096	RAB7A	chr3	128525339	+	DICER1	chr14	95556842	-
intron-3CDS	ENST00000593829	ENST00000283558		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000593829	ENST00000375630		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000593829	ENST00000487903		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000593829	ENST00000375645		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-intron	ENST00000593829	ENST00000419448		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000252816	ENST00000283558		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000252816	ENST00000375630		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000252816	ENST00000487903		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-3CDS	ENST00000252816	ENST00000375645		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
intron-intron	ENST00000252816	ENST00000419448		ChiTaRS3.1			AA576989	LSM4	chr19	18417935	+	ATP11A	chr13	113505477	-
Frame-shit	ENST00000393232	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393232	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393232	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393232	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000393232	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
Frame-shit	ENST00000353868	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000353868	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000353868	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000353868	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000353868	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
Frame-shit	ENST00000539636	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000539636	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000539636	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000539636	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000539636	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
Frame-shit	ENST00000311967	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000311967	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000311967	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000311967	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000311967	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
Frame-shit	ENST00000223190	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000223190	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000223190	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000223190	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000223190	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
Frame-shit	ENST00000393230	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393230	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393230	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393230	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000393230	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
Frame-shit	ENST00000393231	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393231	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393231	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
In-frame	ENST00000393231	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-intron	ENST00000393231	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
intron-3CDS	ENST00000477428	ENST00000380512		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
intron-3CDS	ENST00000477428	ENST00000293831		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
intron-3CDS	ENST00000477428	ENST00000577269		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
intron-3CDS	ENST00000477428	ENST00000582746		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
intron-intron	ENST00000477428	ENST00000581808		ChiTaRS3.1			BC006380	NRF1	chr7	129367207	+	EIF4A1	chr17	7478436	+
5CDS-3UTR	ENST00000343815	ENST00000391833		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000343815	ENST00000391832		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000343815	ENST00000344175		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000343815	ENST00000391834		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000343815	ENST00000391831		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000343815	ENST00000391835		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-intron	ENST00000343815	ENST00000482622		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000428931	ENST00000391833		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000428931	ENST00000391832		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000428931	ENST00000344175		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000428931	ENST00000391834		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000428931	ENST00000391831		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000428931	ENST00000391835		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-intron	ENST00000428931	ENST00000482622		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000271877	ENST00000391833		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000271877	ENST00000391832		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000271877	ENST00000344175		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000271877	ENST00000391834		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000271877	ENST00000391831		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000271877	ENST00000391835		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-intron	ENST00000271877	ENST00000482622		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000361546	ENST00000391833		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000361546	ENST00000391832		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000361546	ENST00000344175		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000361546	ENST00000391834		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000361546	ENST00000391831		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-3UTR	ENST00000361546	ENST00000391835		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
5CDS-intron	ENST00000361546	ENST00000482622		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-3UTR	ENST00000484819	ENST00000391833		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-3UTR	ENST00000484819	ENST00000391832		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-3UTR	ENST00000484819	ENST00000344175		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-3UTR	ENST00000484819	ENST00000391834		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-3UTR	ENST00000484819	ENST00000391831		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-3UTR	ENST00000484819	ENST00000391835		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
intron-intron	ENST00000484819	ENST00000482622		ChiTaRS3.1			BM559400	UBAP2L	chr1	154209588	+	AKT1S1	chr19	50373118	-
Frame-shit	ENST00000301740	ENST00000260102		ChiTaRS3.1			BG979095	SRRM2	chr16	2811863	+	MRPL15	chr8	55047884	+
intron-3CDS	ENST00000574593	ENST00000260102		ChiTaRS3.1			BG979095	SRRM2	chr16	2811863	+	MRPL15	chr8	55047884	+
intron-3UTR	ENST00000465812	ENST00000367142		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
intron-intron	ENST00000465812	ENST00000464938		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-3UTR	ENST00000409052	ENST00000367142		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-intron	ENST00000409052	ENST00000464938		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-3UTR	ENST00000361779	ENST00000367142		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-intron	ENST00000361779	ENST00000464938		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-3UTR	ENST00000259206	ENST00000367142		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-intron	ENST00000259206	ENST00000464938		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-3UTR	ENST00000354115	ENST00000367142		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-intron	ENST00000354115	ENST00000464938		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-3UTR	ENST00000409930	ENST00000367142		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
5CDS-intron	ENST00000409930	ENST00000464938		ChiTaRS3.1			CD520806	IL1RN	chr2	113887198	+	NUCKS1	chr1	205683129	-
In-frame	ENST00000414786	ENST00000524325		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000414786	ENST00000307180		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000414786	ENST00000520166		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000414786	ENST00000519651		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
5CDS-5UTR	ENST00000414786	ENST00000518928		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000445220	ENST00000524325		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000445220	ENST00000307180		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000445220	ENST00000520166		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000445220	ENST00000519651		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
5CDS-5UTR	ENST00000445220	ENST00000518928		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000262795	ENST00000524325		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000262795	ENST00000307180		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000262795	ENST00000520166		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
In-frame	ENST00000262795	ENST00000519651		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
5CDS-5UTR	ENST00000262795	ENST00000518928		ChiTaRS3.1			BM174904	SHANK3	chr22	51160866	+	TSNARE1	chr8	143399996	-
intron-intron	ENST00000308724	ENST00000389462		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3UTR	ENST00000308724	ENST00000309083		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3UTR	ENST00000308724	ENST00000538057		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-intron	ENST00000397120	ENST00000389462		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3UTR	ENST00000397120	ENST00000309083		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3UTR	ENST00000397120	ENST00000538057		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-intron	ENST00000556277	ENST00000389462		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3UTR	ENST00000556277	ENST00000309083		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3UTR	ENST00000556277	ENST00000538057		ChiTaRS3.1			DA570469	AP1G2	chr14	24032086	-	PTMS	chr12	6880070	+
intron-3CDS	ENST00000532317	ENST00000389054		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000520569		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000253811		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000398566		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000398562		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000398557		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000389057		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000532317	ENST00000518047		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-intron	ENST00000532317	ENST00000494967		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000389054		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000520569		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000253811		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000398566		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000398562		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000398557		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000389057		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000526033	ENST00000518047		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-intron	ENST00000526033	ENST00000494967		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000389054		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000520569		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000253811		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000398566		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000398562		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000398557		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000389057		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000393346	ENST00000518047		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-intron	ENST00000393346	ENST00000494967		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000389054		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000520569		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000253811		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000398566		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000398562		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000398557		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000389057		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528398	ENST00000518047		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-intron	ENST00000528398	ENST00000494967		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000389054		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000520569		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000253811		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000398566		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000398562		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000398557		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000389057		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000356360	ENST00000518047		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-intron	ENST00000356360	ENST00000494967		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000389054		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000520569		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000253811		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000398566		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000398562		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000398557		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000389057		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-3CDS	ENST00000528411	ENST00000518047		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
intron-intron	ENST00000528411	ENST00000494967		ChiTaRS3.1			AW992389	PICALM	chr11	85707931	-	DIAPH1	chr5	140958702	-
3UTR-3UTR	ENST00000307602	ENST00000307602		ChiTaRS3.1			AA829758	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
3UTR-intron	ENST00000307602	ENST00000524839		ChiTaRS3.1			AA829758	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
intron-3UTR	ENST00000524839	ENST00000307602		ChiTaRS3.1			AA829758	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
intron-intron	ENST00000524839	ENST00000524839		ChiTaRS3.1			AA829758	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
5CDS-3UTR	ENST00000251595	ENST00000482108		ChiTaRS3.1			T95813	HBA2	chr16	223587	+	PEG10	chr7	94298888	+
5CDS-intron	ENST00000251595	ENST00000488574		ChiTaRS3.1			T95813	HBA2	chr16	223587	+	PEG10	chr7	94298888	+
5CDS-intron	ENST00000251595	ENST00000465184		ChiTaRS3.1			T95813	HBA2	chr16	223587	+	PEG10	chr7	94298888	+
5CDS-3UTR	ENST00000397806	ENST00000482108		ChiTaRS3.1			T95813	HBA2	chr16	223587	+	PEG10	chr7	94298888	+
5CDS-intron	ENST00000397806	ENST00000488574		ChiTaRS3.1			T95813	HBA2	chr16	223587	+	PEG10	chr7	94298888	+
5CDS-intron	ENST00000397806	ENST00000465184		ChiTaRS3.1			T95813	HBA2	chr16	223587	+	PEG10	chr7	94298888	+
intron-3UTR	ENST00000282470	ENST00000400358		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-intron	ENST00000282470	ENST00000400359		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-intron	ENST00000282470	ENST00000470591		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-3UTR	ENST00000418378	ENST00000400358		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-intron	ENST00000418378	ENST00000400359		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-intron	ENST00000418378	ENST00000470591		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-3UTR	ENST00000503414	ENST00000400358		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-intron	ENST00000503414	ENST00000400359		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
intron-intron	ENST00000503414	ENST00000470591		ChiTaRS3.1			DB570293	SPARCL1	chr4	88415694	-	SGSM1	chr22	25322581	+
5CDS-3UTR	ENST00000522793	ENST00000409687		ChiTaRS3.1			BU534967	TTC1	chr5	159437865	+	SAPCD2	chr9	139956764	-
5CDS-3UTR	ENST00000231238	ENST00000409687		ChiTaRS3.1			BU534967	TTC1	chr5	159437865	+	SAPCD2	chr9	139956764	-
intron-3UTR	ENST00000520274	ENST00000409687		ChiTaRS3.1			BU534967	TTC1	chr5	159437865	+	SAPCD2	chr9	139956764	-
intron-3CDS	ENST00000322723	ENST00000261182		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-3CDS	ENST00000322723	ENST00000393263		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-intron	ENST00000322723	ENST00000431879		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-intron	ENST00000322723	ENST00000547773		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-5UTR	ENST00000322723	ENST00000544816		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-5UTR	ENST00000322723	ENST00000542344		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-5UTR	ENST00000322723	ENST00000535020		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-5UTR	ENST00000322723	ENST00000549596		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-intron	ENST00000322723	ENST00000547993		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-intron	ENST00000322723	ENST00000552342		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
intron-intron	ENST00000322723	ENST00000548044		ChiTaRS3.1			BF818583	NCL	chr2	232326446	-	NAP1L1	chr12	76453618	-
Frame-shit	ENST00000379151	ENST00000263125		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000397176		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000539722		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000263125		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000397176		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000539722		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000263125		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000397176		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000539722		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000263125		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000397176		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000539722		ChiTaRS3.1			DB506048	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15921	COL1A1	chr17	48275521	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15921	COL1A1	chr17	48275521	-	PDGFB	chr22	39631879	-
intron-3CDS	ENST00000465343	ENST00000397901		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
intron-3CDS	ENST00000465343	ENST00000253475		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
intron-3CDS	ENST00000465343	ENST00000535997		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
intron-3CDS	ENST00000465343	ENST00000550102		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
intron-5UTR	ENST00000465343	ENST00000547614		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000355095	ENST00000397901		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
In-frame	ENST00000355095	ENST00000253475		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000355095	ENST00000535997		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000355095	ENST00000550102		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
5CDS-5UTR	ENST00000355095	ENST00000547614		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000423484	ENST00000397901		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
In-frame	ENST00000423484	ENST00000253475		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000423484	ENST00000535997		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000423484	ENST00000550102		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
5CDS-5UTR	ENST00000423484	ENST00000547614		ChiTaRS3.1			DB033525	ZNF736	chr7	63797362	+	CHMP1A	chr16	89713742	-
Frame-shit	ENST00000265846	ENST00000605788		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
Frame-shit	ENST00000265846	ENST00000405356		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
Frame-shit	ENST00000265846	ENST00000603742		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
Frame-shit	ENST00000265846	ENST00000488254		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
5CDS-3UTR	ENST00000265846	ENST00000477977		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000605788		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000405356		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000603742		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000488254		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3UTR	ENST00000449296	ENST00000477977		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000605788		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000405356		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000603742		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000488254		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3UTR	ENST00000539900	ENST00000477977		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000605788		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000405356		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000603742		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000488254		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3UTR	ENST00000463358	ENST00000477977		ChiTaRS3.1			BM841194	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
5CDS-intron	ENST00000292123	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000292123	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000292123	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000592224	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000592224	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000592224	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-intron	ENST00000586934	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-intron	ENST00000586934	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-intron	ENST00000586934	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000454510	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000454510	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000454510	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000433404	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000433404	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000433404	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000588852	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000588852	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000588852	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000538656	ENST00000464527		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000538656	ENST00000445927		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000538656	ENST00000294947		ChiTaRS3.1			BF927057	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-3UTR	ENST00000534695	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534695	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534695	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000455725	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000531273	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000420461	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000378852	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534600	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000221957		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000592528		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000529334	ENST00000585479		ChiTaRS3.1			AI979287	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000369026	ENST00000606794		ChiTaRS3.1			DA941414	MCL1	chr1	150547988	-	APLNR	chr11	57003070	-
intron-3UTR	ENST00000464132	ENST00000606794		ChiTaRS3.1			DA941414	MCL1	chr1	150547988	-	APLNR	chr11	57003070	-
intron-3UTR	ENST00000307940	ENST00000606794		ChiTaRS3.1			DA941414	MCL1	chr1	150547988	-	APLNR	chr11	57003070	-
intron-3CDS	ENST00000452135	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000302640		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000354582		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000423119		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000456211		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000357086		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000544951		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000443694		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000463980		ChiTaRS3.1			AI096773	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
3UTR-3UTR	ENST00000305747	ENST00000237623		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-3UTR	ENST00000305747	ENST00000395080		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-intron	ENST00000305747	ENST00000360804		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-3UTR	ENST00000305747	ENST00000509659		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-3UTR	ENST00000392687	ENST00000237623		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-3UTR	ENST00000392687	ENST00000395080		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-intron	ENST00000392687	ENST00000360804		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
3UTR-3UTR	ENST00000392687	ENST00000509659		ChiTaRS3.1			BE815041	CERS6	chr2	169630062	-	SPP1	chr4	88904333	+
Frame-shit	ENST00000426496	ENST00000602540		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000426496	ENST00000266671		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000392078	ENST00000602540		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000392078	ENST00000266671		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
intron-3CDS	ENST00000476522	ENST00000602540		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
intron-3CDS	ENST00000476522	ENST00000266671		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000367742	ENST00000602540		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000367742	ENST00000266671		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000338920	ENST00000602540		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
Frame-shit	ENST00000338920	ENST00000266671		ChiTaRS3.1			BG005109	PRRC2C	chr1	171546738	+	PHLDA1	chr12	76424613	-
intron-intron	ENST00000423169	ENST00000438878		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
intron-3UTR	ENST00000423169	ENST00000275517		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
intron-intron	ENST00000423169	ENST00000404147		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000267868	ENST00000438878		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-3UTR	ENST00000267868	ENST00000275517		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000267868	ENST00000404147		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000557850	ENST00000438878		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-3UTR	ENST00000557850	ENST00000275517		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000557850	ENST00000404147		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000532743	ENST00000438878		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-3UTR	ENST00000532743	ENST00000275517		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000532743	ENST00000404147		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000382643	ENST00000438878		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-3UTR	ENST00000382643	ENST00000275517		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
5CDS-intron	ENST00000382643	ENST00000404147		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
intron-intron	ENST00000530766	ENST00000438878		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
intron-3UTR	ENST00000530766	ENST00000275517		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
intron-intron	ENST00000530766	ENST00000404147		ChiTaRS3.1			AW363804	RAD51	chr15	41022163	+	CDCA5	chr11	64845475	-
intron-3UTR	ENST00000262960	ENST00000318663		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000262960	ENST00000566237		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-intron	ENST00000262960	ENST00000562699		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000598800	ENST00000318663		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000598800	ENST00000566237		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-intron	ENST00000598800	ENST00000562699		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000597849	ENST00000318663		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000597849	ENST00000566237		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-intron	ENST00000597849	ENST00000562699		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000594671	ENST00000318663		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000594671	ENST00000566237		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-intron	ENST00000594671	ENST00000562699		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000601173	ENST00000318663		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-3UTR	ENST00000601173	ENST00000566237		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
intron-intron	ENST00000601173	ENST00000562699		ChiTaRS3.1			BF436516	DPP9	chr19	4675832	+	ORAI3	chr16	30965571	-
Frame-shit	ENST00000366510	ENST00000394023		ChiTaRS3.1			DB089858	SCCPDH	chr1	246929436	+	SMARCC2	chr12	56565117	-
Frame-shit	ENST00000366510	ENST00000550164		ChiTaRS3.1			DB089858	SCCPDH	chr1	246929436	+	SMARCC2	chr12	56565117	-
Frame-shit	ENST00000366510	ENST00000347471		ChiTaRS3.1			DB089858	SCCPDH	chr1	246929436	+	SMARCC2	chr12	56565117	-
Frame-shit	ENST00000366510	ENST00000267064		ChiTaRS3.1			DB089858	SCCPDH	chr1	246929436	+	SMARCC2	chr12	56565117	-
5CDS-intron	ENST00000366510	ENST00000550859		ChiTaRS3.1			DB089858	SCCPDH	chr1	246929436	+	SMARCC2	chr12	56565117	-
5UTR-intron	ENST00000536543	ENST00000584767		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
5UTR-intron	ENST00000536543	ENST00000581589		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
5UTR-3UTR	ENST00000536543	ENST00000322444		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
3UTR-intron	ENST00000372525	ENST00000584767		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
3UTR-intron	ENST00000372525	ENST00000581589		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
3UTR-3UTR	ENST00000372525	ENST00000322444		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
intron-intron	ENST00000468913	ENST00000584767		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
intron-intron	ENST00000468913	ENST00000581589		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
intron-3UTR	ENST00000468913	ENST00000322444		ChiTaRS3.1			BM683151	C1orf50	chr1	43241131	-	KCTD2	chr17	73061697	-
intron-3UTR	ENST00000340666	ENST00000357164		ChiTaRS3.1			BU620269	SYN1	chrX	47446026	-	GM2A	chr5	150647534	-
intron-3UTR	ENST00000295987	ENST00000357164		ChiTaRS3.1			BU620269	SYN1	chrX	47446026	-	GM2A	chr5	150647534	-
5CDS-intron	ENST00000378097	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378097	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378097	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378097	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378097	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000378097	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000352527	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000352527	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000352527	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000352527	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000352527	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000352527	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000341524	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000341524	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000341524	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000341524	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000341524	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000341524	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000164247	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000164247	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000164247	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000164247	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000164247	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000164247	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378083	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378083	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378083	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378083	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378083	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000378083	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378111	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378111	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378111	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378111	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378111	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000378111	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378092	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378092	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378092	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378092	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378092	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000378092	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000602612	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000602612	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000602612	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000602612	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000602612	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000602612	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378087	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378087	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378087	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378087	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000378087	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000378087	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-intron	ENST00000459822	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-intron	ENST00000459822	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-intron	ENST00000459822	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-intron	ENST00000459822	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-intron	ENST00000459822	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-3UTR	ENST00000459822	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000458166	ENST00000359895		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000458166	ENST00000356618		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000458166	ENST00000355841		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000458166	ENST00000505746		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-intron	ENST00000458166	ENST00000393551		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
5CDS-3UTR	ENST00000458166	ENST00000355572		ChiTaRS3.1			BP378678	KCNAB2	chr1	6142303	+	PDLIM7	chr5	176917471	-
intron-3UTR	ENST00000390237	ENST00000261647		ChiTaRS3.1			AW291782	IGKC	chr2	89156747	+	TTC19	chr17	15931273	-
intron-3UTR	ENST00000390237	ENST00000486880		ChiTaRS3.1			AW291782	IGKC	chr2	89156747	+	TTC19	chr17	15931273	-
intron-intron	ENST00000390237	ENST00000497842		ChiTaRS3.1			AW291782	IGKC	chr2	89156747	+	TTC19	chr17	15931273	-
intron-3UTR	ENST00000337288	ENST00000269967		ChiTaRS3.1			AA639515	STARD7	chr2	96850721	+	CCDC97	chr19	41830519	-
intron-3UTR	ENST00000462501	ENST00000269967		ChiTaRS3.1			AA639515	STARD7	chr2	96850721	+	CCDC97	chr19	41830519	-
Frame-shit	ENST00000409514	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409514	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409098	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409098	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409394	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409394	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000258416	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000258416	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409495	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409495	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409167	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409167	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409322	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
Frame-shit	ENST00000409322	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
3UTR-3CDS	ENST00000479834	ENST00000262367		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
3UTR-3CDS	ENST00000479834	ENST00000382070		ChiTaRS3.1			DA778521	EIF4E2	chr2	233421174	+	CREBBP	chr16	3832912	-
intron-3CDS	ENST00000448841	ENST00000367816		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000448841	ENST00000367815		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000448841	ENST00000499679		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000448841	ENST00000367813		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000369889	ENST00000367816		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000369889	ENST00000367815		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000369889	ENST00000499679		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-3CDS	ENST00000369889	ENST00000367813		ChiTaRS3.1			AV704056	WBP1L	chr10	104590288	-	ATP1B1	chr1	169094126	+
intron-5UTR	ENST00000371746	ENST00000378600		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000378603		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000256996		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000378601		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378600		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378603		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000256996		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378601		ChiTaRS3.1			BC001160	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-intron	ENST00000503238	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000503238	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000503238	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000503238	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000358350	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000358350	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000358350	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000358350	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000537810	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000537810	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000537810	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000537810	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000264319	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000264319	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000264319	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000264319	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000507711	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000507711	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000507711	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000507711	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000514783	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000514783	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000514783	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000514783	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000507873	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000507873	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000507873	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000507873	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000506685	ENST00000367760		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-3UTR	ENST00000506685	ENST00000239461		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000506685	ENST00000497230		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
intron-intron	ENST00000506685	ENST00000476867		ChiTaRS3.1			CV569065	FRYL	chr4	48548189	-	PRRX1	chr1	170706897	+
5CDS-3UTR	ENST00000369485	ENST00000546390		ChiTaRS3.1			BG195148	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000265607	ENST00000546390		ChiTaRS3.1			BG195148	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000538899	ENST00000546390		ChiTaRS3.1			BG195148	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000369475	ENST00000546390		ChiTaRS3.1			BG195148	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
intron-3CDS	ENST00000452313	ENST00000266458		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-3CDS	ENST00000452313	ENST00000421801		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-5UTR	ENST00000452313	ENST00000544284		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-intron	ENST00000452313	ENST00000545047		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-intron	ENST00000452313	ENST00000543602		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-intron	ENST00000452313	ENST00000545887		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-3UTR	ENST00000452313	ENST00000539289		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-5UTR	ENST00000452313	ENST00000546017		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-5UTR	ENST00000452313	ENST00000535576		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-5UTR	ENST00000452313	ENST00000539170		ChiTaRS3.1			AA296513	NPIPB7	chr16	28875269	+	GABARAPL1	chr12	10370659	+
intron-intron	ENST00000287263	ENST00000502798		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000287263	ENST00000322285		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000330843	ENST00000502798		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000330843	ENST00000322285		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000522727	ENST00000502798		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000522727	ENST00000322285		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000523182	ENST00000502798		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000523182	ENST00000322285		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000524118	ENST00000502798		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
intron-intron	ENST00000524118	ENST00000322285		ChiTaRS3.1			BM825908	RAB11FIP1	chr8	37718823	-	SV2C	chr5	75538217	-
In-frame	ENST00000345044	ENST00000356654		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
In-frame	ENST00000345044	ENST00000396684		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
intron-3CDS	ENST00000403208	ENST00000356654		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
intron-3CDS	ENST00000403208	ENST00000396684		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
In-frame	ENST00000398356	ENST00000356654		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
In-frame	ENST00000398356	ENST00000396684		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
intron-3CDS	ENST00000405847	ENST00000356654		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
intron-3CDS	ENST00000405847	ENST00000396684		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
3UTR-3CDS	ENST00000467660	ENST00000356654		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
3UTR-3CDS	ENST00000467660	ENST00000396684		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
In-frame	ENST00000316185	ENST00000356654		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
In-frame	ENST00000316185	ENST00000396684		ChiTaRS3.1			BM668479	SLC2A11	chr22	24225014	-	ATN1	chr12	7045874	-
intron-intron	ENST00000372491	ENST00000298310		ChiTaRS3.1			AK075051	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000382135		ChiTaRS3.1			AK075051	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000545773		ChiTaRS3.1			AK075051	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000556925		ChiTaRS3.1			AK075051	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000546046		ChiTaRS3.1			AK075051	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000556672		ChiTaRS3.1			AK075051	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-3CDS	ENST00000282050	ENST00000458659		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000282050	ENST00000501704		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000282050	ENST00000261489		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000282050	ENST00000460842		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000593152	ENST00000458659		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000593152	ENST00000501704		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000593152	ENST00000261489		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000593152	ENST00000460842		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000590665	ENST00000458659		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000590665	ENST00000501704		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000590665	ENST00000261489		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000590665	ENST00000460842		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000398752	ENST00000458659		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000398752	ENST00000501704		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000398752	ENST00000261489		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000398752	ENST00000460842		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000591267	ENST00000458659		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-3CDS	ENST00000591267	ENST00000501704		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000591267	ENST00000261489		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
intron-intron	ENST00000591267	ENST00000460842		ChiTaRS3.1			DA496129	ATP5A1	chr18	43669885	-	TSC22D1	chr13	45149772	-
5CDS-3UTR	ENST00000258742	ENST00000318430		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
5CDS-3UTR	ENST00000258742	ENST00000589691		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
5CDS-intron	ENST00000258742	ENST00000591144		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
5CDS-3UTR	ENST00000410002	ENST00000318430		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
5CDS-3UTR	ENST00000410002	ENST00000589691		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
5CDS-intron	ENST00000410002	ENST00000591144		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
3UTR-3UTR	ENST00000487595	ENST00000318430		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
3UTR-3UTR	ENST00000487595	ENST00000589691		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
3UTR-intron	ENST00000487595	ENST00000591144		ChiTaRS3.1			CR984678	NUPL2	chr7	23226765	+	TMC8	chr17	76137496	+
intron-intron	ENST00000320934	ENST00000565698		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000320934	ENST00000304658		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000320934	ENST00000561488		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000540028	ENST00000565698		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000540028	ENST00000304658		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000540028	ENST00000561488		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000529458	ENST00000565698		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000529458	ENST00000304658		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000529458	ENST00000561488		ChiTaRS3.1			BF478188	PCSK7	chr11	117100334	+	XPO6	chr16	28175523	+
intron-intron	ENST00000431197	ENST00000374566		ChiTaRS3.1			Z36531	CCDC146	chr7	76825492	-	EPB41L4B	chr9	112002728	-
intron-3UTR	ENST00000431197	ENST00000374557		ChiTaRS3.1			Z36531	CCDC146	chr7	76825492	-	EPB41L4B	chr9	112002728	-
intron-intron	ENST00000285871	ENST00000374566		ChiTaRS3.1			Z36531	CCDC146	chr7	76825492	-	EPB41L4B	chr9	112002728	-
intron-3UTR	ENST00000285871	ENST00000374557		ChiTaRS3.1			Z36531	CCDC146	chr7	76825492	-	EPB41L4B	chr9	112002728	-
intron-intron	ENST00000415740	ENST00000374566		ChiTaRS3.1			Z36531	CCDC146	chr7	76825492	-	EPB41L4B	chr9	112002728	-
intron-3UTR	ENST00000415740	ENST00000374557		ChiTaRS3.1			Z36531	CCDC146	chr7	76825492	-	EPB41L4B	chr9	112002728	-
intron-3UTR	ENST00000338779	ENST00000318238		ChiTaRS3.1			AW298142	MTSS1L	chr16	70695216	+	SAMD9L	chr7	92760330	+
intron-3UTR	ENST00000338779	ENST00000411955		ChiTaRS3.1			AW298142	MTSS1L	chr16	70695216	+	SAMD9L	chr7	92760330	+
intron-intron	ENST00000338779	ENST00000437805		ChiTaRS3.1			AW298142	MTSS1L	chr16	70695216	+	SAMD9L	chr7	92760330	+
intron-intron	ENST00000338779	ENST00000477816		ChiTaRS3.1			AW298142	MTSS1L	chr16	70695216	+	SAMD9L	chr7	92760330	+
intron-3CDS	ENST00000369144	ENST00000254480		ChiTaRS3.1			BE797876	EIF3A	chr10	120801969	-	SMARCC1	chr3	47680270	-
intron-5UTR	ENST00000369144	ENST00000425518		ChiTaRS3.1			BE797876	EIF3A	chr10	120801969	-	SMARCC1	chr3	47680270	-
intron-3CDS	ENST00000541549	ENST00000254480		ChiTaRS3.1			BE797876	EIF3A	chr10	120801969	-	SMARCC1	chr3	47680270	-
intron-5UTR	ENST00000541549	ENST00000425518		ChiTaRS3.1			BE797876	EIF3A	chr10	120801969	-	SMARCC1	chr3	47680270	-
intron-3UTR	ENST00000285274	ENST00000354452		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-3UTR	ENST00000285274	ENST00000356073		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000568673		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000457482		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000543082		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000540999		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000537578		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000564999		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000568740		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000537856		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000544241		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000561992		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000561831		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000565018		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000570287		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000564228		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000567880		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000566286		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000566279		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000564403		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000398339		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000570177		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000285274	ENST00000563760		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-3UTR	ENST00000545289	ENST00000354452		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-3UTR	ENST00000545289	ENST00000356073		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000568673		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000457482		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000543082		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000540999		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000537578		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000564999		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000568740		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000537856		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000544241		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000561992		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000561831		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000565018		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000570287		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000564228		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000567880		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000566286		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000566279		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000564403		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000398339		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000570177		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-intron	ENST00000545289	ENST00000563760		ChiTaRS3.1			W95823	ZNF286B	chr17	18571638	-	TCF4	chr18	52891829	-
intron-3CDS	ENST00000378609	ENST00000359651		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-3CDS	ENST00000378609	ENST00000367284		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-3CDS	ENST00000378609	ENST00000367283		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-intron	ENST00000378609	ENST00000495848		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-3CDS	ENST00000472614	ENST00000359651		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-3CDS	ENST00000472614	ENST00000367284		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-3CDS	ENST00000472614	ENST00000367283		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
intron-intron	ENST00000472614	ENST00000495848		ChiTaRS3.1			BE140587	GNB1	chr1	1718278	-	ELF3	chr1	201984416	+
3UTR-3UTR	ENST00000381470	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000381470	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000432128	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000432128	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000443491	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000443491	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
intron-3UTR	ENST00000517600	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
intron-3UTR	ENST00000517600	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523782	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523782	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000265800	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000265800	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000415253	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000415253	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000358242	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000358242	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523266	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523266	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000519907	ENST00000394936		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000519907	ENST00000394934		ChiTaRS3.1			CA433301	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
intron-3CDS	ENST00000300584	ENST00000371399		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000072644		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000539954		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000300584	ENST00000469457		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000371399		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000072644		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000539954		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000409931	ENST00000469457		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000371399		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000072644		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000539954		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000492078	ENST00000469457		ChiTaRS3.1			BM043998	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
5CDS-3UTR	ENST00000381232	ENST00000356093		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000381232	ENST00000398863		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000381232	ENST00000343067		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000381232	ENST00000349460		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000381232	ENST00000373800		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000381232	ENST00000347529		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000381232	ENST00000373798		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000381232	ENST00000373797		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000381232	ENST00000460378		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000555818	ENST00000356093		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000555818	ENST00000398863		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000555818	ENST00000343067		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000555818	ENST00000349460		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000555818	ENST00000373800		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000555818	ENST00000347529		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000555818	ENST00000373798		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000555818	ENST00000373797		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000555818	ENST00000460378		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000358550	ENST00000356093		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000358550	ENST00000398863		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000358550	ENST00000343067		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000358550	ENST00000349460		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000358550	ENST00000373800		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000358550	ENST00000347529		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000358550	ENST00000373798		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000358550	ENST00000373797		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000358550	ENST00000460378		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000537413	ENST00000356093		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000537413	ENST00000398863		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000537413	ENST00000343067		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000537413	ENST00000349460		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000537413	ENST00000373800		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000537413	ENST00000347529		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000537413	ENST00000373798		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-intron	ENST00000537413	ENST00000373797		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
5CDS-3UTR	ENST00000537413	ENST00000460378		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-3UTR	ENST00000554874	ENST00000356093		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-3UTR	ENST00000554874	ENST00000398863		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-3UTR	ENST00000554874	ENST00000343067		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-intron	ENST00000554874	ENST00000349460		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-intron	ENST00000554874	ENST00000373800		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-intron	ENST00000554874	ENST00000347529		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-3UTR	ENST00000554874	ENST00000373798		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-intron	ENST00000554874	ENST00000373797		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
3UTR-3UTR	ENST00000554874	ENST00000460378		ChiTaRS3.1			CB857782	SIPA1L1	chr14	72196986	+	EPB41	chr1	29446085	-
Frame-shit	ENST00000434377	ENST00000426333		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000434377	ENST00000592576		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000434377	ENST00000591382		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000434377	ENST00000402521		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5CDS-intron	ENST00000434377	ENST00000589211		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000454319	ENST00000426333		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000454319	ENST00000592576		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000454319	ENST00000591382		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000454319	ENST00000402521		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5CDS-intron	ENST00000454319	ENST00000589211		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000493391	ENST00000426333		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000493391	ENST00000592576		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000493391	ENST00000591382		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000493391	ENST00000402521		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-intron	ENST00000493391	ENST00000589211		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000392170	ENST00000426333		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000392170	ENST00000592576		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000392170	ENST00000591382		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000392170	ENST00000402521		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5CDS-intron	ENST00000392170	ENST00000589211		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000424129	ENST00000426333		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000424129	ENST00000592576		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000424129	ENST00000591382		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
Frame-shit	ENST00000424129	ENST00000402521		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5CDS-intron	ENST00000424129	ENST00000589211		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000472909	ENST00000426333		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000472909	ENST00000592576		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000472909	ENST00000591382		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-3CDS	ENST00000472909	ENST00000402521		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
5UTR-intron	ENST00000472909	ENST00000589211		ChiTaRS3.1			CX753702	ZNF566	chr19	36967447	-	EFTUD2	chr17	42953473	-
intron-3UTR	ENST00000305786	ENST00000381346		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000305786	ENST00000553384		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-intron	ENST00000305786	ENST00000428130		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409409	ENST00000381346		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409409	ENST00000553384		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-intron	ENST00000409409	ENST00000428130		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409764	ENST00000381346		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409764	ENST00000553384		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-intron	ENST00000409764	ENST00000428130		ChiTaRS3.1			AI928382	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
5CDS-3UTR	ENST00000301740	ENST00000231751		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
5CDS-3UTR	ENST00000301740	ENST00000426532		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
5CDS-intron	ENST00000301740	ENST00000417439		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
5CDS-intron	ENST00000301740	ENST00000493056		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
3UTR-3UTR	ENST00000574593	ENST00000231751		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
3UTR-3UTR	ENST00000574593	ENST00000426532		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
3UTR-intron	ENST00000574593	ENST00000417439		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
3UTR-intron	ENST00000574593	ENST00000493056		ChiTaRS3.1			BF343490	SRRM2	chr16	2817923	+	LTF	chr3	46477579	-
intron-3UTR	ENST00000264712	ENST00000225394		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-3UTR	ENST00000264712	ENST00000394869		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-intron	ENST00000264712	ENST00000581348		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-intron	ENST00000264712	ENST00000579937		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-3UTR	ENST00000405914	ENST00000225394		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-3UTR	ENST00000405914	ENST00000394869		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-intron	ENST00000405914	ENST00000581348		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-intron	ENST00000405914	ENST00000579937		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-3UTR	ENST00000496378	ENST00000225394		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-3UTR	ENST00000496378	ENST00000394869		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-intron	ENST00000496378	ENST00000581348		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-intron	ENST00000496378	ENST00000579937		ChiTaRS3.1			AB290173	KIF3C	chr2	26149857	-	GIT1	chr17	27901100	-
intron-3UTR	ENST00000374515	ENST00000263341		ChiTaRS3.1			AA362147	TXN	chr9	113007068	-	IL1B	chr2	113587644	-
intron-intron	ENST00000374515	ENST00000491056		ChiTaRS3.1			AA362147	TXN	chr9	113007068	-	IL1B	chr2	113587644	-
intron-3UTR	ENST00000374517	ENST00000263341		ChiTaRS3.1			AA362147	TXN	chr9	113007068	-	IL1B	chr2	113587644	-
intron-intron	ENST00000374517	ENST00000491056		ChiTaRS3.1			AA362147	TXN	chr9	113007068	-	IL1B	chr2	113587644	-
intron-3UTR	ENST00000487892	ENST00000263341		ChiTaRS3.1			AA362147	TXN	chr9	113007068	-	IL1B	chr2	113587644	-
intron-intron	ENST00000487892	ENST00000491056		ChiTaRS3.1			AA362147	TXN	chr9	113007068	-	IL1B	chr2	113587644	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15919	COL1A1	chr17	48267039	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15919	COL1A1	chr17	48267039	-	PDGFB	chr22	39631879	-
intron-3CDS	ENST00000377026	ENST00000316059		ChiTaRS3.1			BQ379630	NAPB	chr20	23356493	-	ZFP91	chr11	58378490	+
intron-3CDS	ENST00000398425	ENST00000316059		ChiTaRS3.1			BQ379630	NAPB	chr20	23356493	-	ZFP91	chr11	58378490	+
intron-3CDS	ENST00000432543	ENST00000316059		ChiTaRS3.1			BQ379630	NAPB	chr20	23356493	-	ZFP91	chr11	58378490	+
intron-3CDS	ENST00000472855	ENST00000316059		ChiTaRS3.1			BQ379630	NAPB	chr20	23356493	-	ZFP91	chr11	58378490	+
5CDS-intron	ENST00000261991	ENST00000553400		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-intron	ENST00000261991	ENST00000330836		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000261991	ENST00000544005		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000261991	ENST00000555054		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000536315	ENST00000553400		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000536315	ENST00000330836		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000536315	ENST00000544005		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000536315	ENST00000555054		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-intron	ENST00000418736	ENST00000553400		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-intron	ENST00000418736	ENST00000330836		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000418736	ENST00000544005		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000418736	ENST00000555054		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000556304	ENST00000553400		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000556304	ENST00000330836		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000556304	ENST00000544005		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000556304	ENST00000555054		ChiTaRS3.1			BQ642898	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000330387	ENST00000397010		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000309576		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000397015		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000397012		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000397026		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000397000		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000539812		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000330387	ENST00000287820		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000397010		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000309576		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000397015		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000397012		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000397026		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000397000		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000539812		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000456390	ENST00000287820		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000397010		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000309576		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000397015		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000397012		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000397026		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000397000		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000539812		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000452463	ENST00000287820		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000397010		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000309576		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000397015		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000397012		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000397026		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000397000		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000539812		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
5CDS-5UTR	ENST00000458726	ENST00000287820		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000397010		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000309576		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000397015		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000397012		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000397026		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000397000		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000539812		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-5UTR	ENST00000468127	ENST00000287820		ChiTaRS3.1			AY222643	CREB3L2	chr7	137612896	-	PPARG	chr3	12421202	+
intron-3UTR	ENST00000544993	ENST00000397621		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000544993	ENST00000324361		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000544993	ENST00000562563		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-intron	ENST00000544993	ENST00000562585		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000300022	ENST00000397621		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000300022	ENST00000324361		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000300022	ENST00000562563		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-intron	ENST00000300022	ENST00000562585		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000524669	ENST00000397621		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000524669	ENST00000324361		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000524669	ENST00000562563		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-intron	ENST00000524669	ENST00000562585		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000534711	ENST00000397621		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000534711	ENST00000324361		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000534711	ENST00000562563		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-intron	ENST00000534711	ENST00000562585		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000531442	ENST00000397621		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000531442	ENST00000324361		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-3UTR	ENST00000531442	ENST00000562563		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
intron-intron	ENST00000531442	ENST00000562585		ChiTaRS3.1			H51161	YPEL4	chr11	57412795	-	FBXL16	chr16	743935	-
3UTR-3UTR	ENST00000326003	ENST00000534336		ChiTaRS3.1			BF680981	KLK3	chr19	51363831	+	MALAT1	chr11	65266528	+
intron-3UTR	ENST00000597483	ENST00000534336		ChiTaRS3.1			BF680981	KLK3	chr19	51363831	+	MALAT1	chr11	65266528	+
intron-3UTR	ENST00000593997	ENST00000534336		ChiTaRS3.1			BF680981	KLK3	chr19	51363831	+	MALAT1	chr11	65266528	+
intron-3UTR	ENST00000595952	ENST00000534336		ChiTaRS3.1			BF680981	KLK3	chr19	51363831	+	MALAT1	chr11	65266528	+
intron-3UTR	ENST00000360617	ENST00000534336		ChiTaRS3.1			BF680981	KLK3	chr19	51363831	+	MALAT1	chr11	65266528	+
Frame-shit	ENST00000584601	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000584601	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000584601	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
Frame-shit	ENST00000406381	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000406381	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000406381	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
Frame-shit	ENST00000541774	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000541774	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000541774	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
Frame-shit	ENST00000445658	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000445658	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000445658	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
Frame-shit	ENST00000540147	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000540147	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000540147	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
Frame-shit	ENST00000584450	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000584450	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000584450	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
Frame-shit	ENST00000269571	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000269571	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
5CDS-intron	ENST00000269571	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-3CDS	ENST00000578199	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-intron	ENST00000578199	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-intron	ENST00000578199	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-3CDS	ENST00000540042	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-intron	ENST00000540042	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-intron	ENST00000540042	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-3CDS	ENST00000584888	ENST00000373647		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-intron	ENST00000584888	ENST00000493854		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-intron	ENST00000584888	ENST00000373643		ChiTaRS3.1			AW371253	ERBB2	chr17	37881986	+	RABGAP1	chr9	125852605	+
intron-3UTR	ENST00000516892	ENST00000342922		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000402799		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000311027		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000406482		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000407859		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000349238		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-intron	ENST00000516892	ENST00000395344		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000395336		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-3UTR	ENST00000516892	ENST00000402192		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-intron	ENST00000516892	ENST00000405573		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
intron-intron	ENST00000516892	ENST00000489415		ChiTaRS3.1			AV707488	MEG3	chr14	101295418	+	MADD	chr11	47351092	+
3UTR-intron	ENST00000570308	ENST00000476233		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
3UTR-intron	ENST00000570308	ENST00000354667		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
3UTR-intron	ENST00000570308	ENST00000356674		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
3UTR-intron	ENST00000219070	ENST00000476233		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
3UTR-intron	ENST00000219070	ENST00000354667		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
3UTR-intron	ENST00000219070	ENST00000356674		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
intron-intron	ENST00000543485	ENST00000476233		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
intron-intron	ENST00000543485	ENST00000354667		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
intron-intron	ENST00000543485	ENST00000356674		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
intron-intron	ENST00000437642	ENST00000476233		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
intron-intron	ENST00000437642	ENST00000354667		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
intron-intron	ENST00000437642	ENST00000356674		ChiTaRS3.1			BG501102	MMP2	chr16	55539722	+	HNRNPA2B1	chr7	26233310	-
5CDS-intron	ENST00000253079	ENST00000253079		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000253079	ENST00000392441		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000253079	ENST00000537566		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000253079	ENST00000392440		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392441	ENST00000253079		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392441	ENST00000392441		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392441	ENST00000537566		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392441	ENST00000392440		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000537566	ENST00000253079		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000537566	ENST00000392441		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000537566	ENST00000537566		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000537566	ENST00000392440		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392440	ENST00000253079		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392440	ENST00000392441		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392440	ENST00000537566		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
5CDS-intron	ENST00000392440	ENST00000392440		ChiTaRS3.1			AK058161	CCDC62	chr12	123285900	+	CCDC62	chr11	64188004	+
In-frame	ENST00000257497	ENST00000397933		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
In-frame	ENST00000257497	ENST00000473835		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
In-frame	ENST00000257497	ENST00000493598		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
In-frame	ENST00000376911	ENST00000397933		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
In-frame	ENST00000376911	ENST00000473835		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
In-frame	ENST00000376911	ENST00000493598		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
intron-3CDS	ENST00000491192	ENST00000397933		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
intron-3CDS	ENST00000491192	ENST00000473835		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
intron-3CDS	ENST00000491192	ENST00000493598		ChiTaRS3.1			CB132862	ANXA1	chr9	75775236	+	U2SURP	chr3	142769845	+
intron-intron	ENST00000209873	ENST00000431982		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000209873	ENST00000413573		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000209873	ENST00000252037		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000394384	ENST00000431982		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000394384	ENST00000413573		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000394384	ENST00000252037		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000550286	ENST00000431982		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000550286	ENST00000413573		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000550286	ENST00000252037		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000549983	ENST00000431982		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000549983	ENST00000413573		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-intron	ENST00000549983	ENST00000252037		ChiTaRS3.1			AW205219	AAAS	chr12	53701290	+	FKBP6	chr7	72738395	+
intron-5UTR	ENST00000216190	ENST00000310473		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000216190	ENST00000536983		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000216190	ENST00000542615		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000478547	ENST00000310473		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000478547	ENST00000536983		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000478547	ENST00000542615		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000541106	ENST00000310473		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000541106	ENST00000536983		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000541106	ENST00000542615		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000405442	ENST00000310473		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000405442	ENST00000536983		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
intron-5UTR	ENST00000405442	ENST00000542615		ChiTaRS3.1			BE260321	EIF3D	chr22	36920681	-	UCP2	chr11	73693808	-
5CDS-3UTR	ENST00000526148	ENST00000358794		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000526148	ENST00000305218		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000526148	ENST00000538945		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000526148	ENST00000543847		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000526148	ENST00000540501		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000525681	ENST00000358794		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000525681	ENST00000305218		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000525681	ENST00000538945		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000525681	ENST00000543847		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000525681	ENST00000540501		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000339995	ENST00000358794		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000339995	ENST00000305218		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000339995	ENST00000538945		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000339995	ENST00000543847		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000339995	ENST00000540501		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000396525	ENST00000358794		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-3UTR	ENST00000396525	ENST00000305218		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000396525	ENST00000538945		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000396525	ENST00000543847		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
5CDS-intron	ENST00000396525	ENST00000540501		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
intron-3UTR	ENST00000525995	ENST00000358794		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
intron-3UTR	ENST00000525995	ENST00000305218		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
intron-intron	ENST00000525995	ENST00000538945		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
intron-intron	ENST00000525995	ENST00000543847		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
intron-intron	ENST00000525995	ENST00000540501		ChiTaRS3.1			BG261367	EIF4G2	chr11	10821637	-	STIP1	chr11	63971945	+
3UTR-3UTR	ENST00000276603	ENST00000228506		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000412616		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000535413		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3UTR	ENST00000276602	ENST00000228506		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000412616		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000535413		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000520783	ENST00000228506		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000412616		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000535413		ChiTaRS3.1			AI656269	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
In-frame	ENST00000320574	ENST00000374490		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
In-frame	ENST00000320574	ENST00000436439		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
5CDS-5UTR	ENST00000320574	ENST00000374483		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
5CDS-5UTR	ENST00000320574	ENST00000509389		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
In-frame	ENST00000535270	ENST00000374490		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
In-frame	ENST00000535270	ENST00000436439		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
5CDS-5UTR	ENST00000535270	ENST00000374483		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
5CDS-5UTR	ENST00000535270	ENST00000509389		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
intron-3CDS	ENST00000434528	ENST00000374490		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
intron-3CDS	ENST00000434528	ENST00000436439		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
intron-5UTR	ENST00000434528	ENST00000374483		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
intron-5UTR	ENST00000434528	ENST00000509389		ChiTaRS3.1			AB209902	POLE	chr12	133225513	-	HMGCL	chr1	24147086	-
5CDS-3UTR	ENST00000373548	ENST00000325558		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
5CDS-3UTR	ENST00000373548	ENST00000543125		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
5CDS-3UTR	ENST00000373548	ENST00000538258		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
5UTR-3UTR	ENST00000373541	ENST00000325558		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
5UTR-3UTR	ENST00000373541	ENST00000543125		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
5UTR-3UTR	ENST00000373541	ENST00000538258		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
intron-3UTR	ENST00000490081	ENST00000325558		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
intron-3UTR	ENST00000490081	ENST00000543125		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
intron-3UTR	ENST00000490081	ENST00000538258		ChiTaRS3.1			BP342282	HDAC1	chr1	32792661	+	PGA3	chr11	60980279	+
intron-3CDS	ENST00000425441	ENST00000228284		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000425441	ENST00000431469		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000425441	ENST00000552221		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000425441	ENST00000546611		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000292314	ENST00000228284		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000292314	ENST00000431469		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000292314	ENST00000552221		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000292314	ENST00000546611		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000546280	ENST00000228284		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000546280	ENST00000431469		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000546280	ENST00000552221		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000546280	ENST00000546611		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000605358	ENST00000228284		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-3CDS	ENST00000605358	ENST00000431469		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000605358	ENST00000552221		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
intron-intron	ENST00000605358	ENST00000546611		ChiTaRS3.1			BE932204	CCDC12	chr3	46965130	-	SART3	chr12	108920289	-
5CDS-intron	ENST00000435765	ENST00000505350		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000435765	ENST00000457016		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000435765	ENST00000257430		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000435765	ENST00000508376		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000292644	ENST00000505350		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000292644	ENST00000457016		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000292644	ENST00000257430		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5CDS-intron	ENST00000292644	ENST00000508376		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5UTR-intron	ENST00000544811	ENST00000505350		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5UTR-intron	ENST00000544811	ENST00000457016		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5UTR-intron	ENST00000544811	ENST00000257430		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
5UTR-intron	ENST00000544811	ENST00000508376		ChiTaRS3.1			DA326202	PSMC2	chr7	102995381	+	APC	chr5	112177806	+
intron-3CDS	ENST00000344749	ENST00000216797		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000344749	ENST00000557140		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000344749	ENST00000557389		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-5UTR	ENST00000344749	ENST00000557100		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000262965	ENST00000216797		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000262965	ENST00000557140		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000262965	ENST00000557389		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-5UTR	ENST00000262965	ENST00000557100		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000453954	ENST00000216797		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000453954	ENST00000557140		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000453954	ENST00000557389		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-5UTR	ENST00000453954	ENST00000557100		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000395423	ENST00000216797		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000395423	ENST00000557140		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000395423	ENST00000557389		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-5UTR	ENST00000395423	ENST00000557100		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000588136	ENST00000216797		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000588136	ENST00000557140		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-3CDS	ENST00000588136	ENST00000557389		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
intron-5UTR	ENST00000588136	ENST00000557100		ChiTaRS3.1			BE874494	TCF3	chr19	1622355	-	NFKBIA	chr14	35871729	-
3UTR-3UTR	ENST00000423729	ENST00000367182		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-3UTR	ENST00000423729	ENST00000463049		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000423729	ENST00000507825		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000423729	ENST00000454264		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000423729	ENST00000367183		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000423729	ENST00000367180		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000423729	ENST00000391947		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-3UTR	ENST00000331662	ENST00000367182		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-3UTR	ENST00000331662	ENST00000463049		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000331662	ENST00000507825		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000331662	ENST00000454264		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000331662	ENST00000367183		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000331662	ENST00000367180		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
3UTR-intron	ENST00000331662	ENST00000391947		ChiTaRS3.1			AW128860	NAT8L	chr4	2067219	+	MDM4	chr1	204519186	-
Frame-shit	ENST00000341547	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000341547	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000341547	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000341547	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000357063	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000357063	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000357063	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000357063	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000377534	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000377534	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000377534	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000377534	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000321797	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000321797	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000321797	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000321797	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000526202	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000526202	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000526202	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5CDS-intron	ENST00000526202	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000465261	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-3CDS	ENST00000465261	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000465261	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
5UTR-intron	ENST00000465261	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-3CDS	ENST00000605961	ENST00000442011		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-3CDS	ENST00000605961	ENST00000305126		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-intron	ENST00000605961	ENST00000508076		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
intron-intron	ENST00000605961	ENST00000504185		ChiTaRS3.1			BE616343	LMO7	chr13	76335180	+	TGFBI	chr5	135382540	+
Frame-shit	ENST00000511216	ENST00000351989		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000511216	ENST00000383024		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000511216	ENST00000407755		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000351989		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000383024		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000389851	ENST00000407755		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000351989		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000383024		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
Frame-shit	ENST00000507531	ENST00000407755		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000351989		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000383024		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000511563	ENST00000407755		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000351989		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000383024		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000512728	ENST00000407755		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000351989		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000383024		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-3CDS	ENST00000507422	ENST00000407755		ChiTaRS3.1			AI638538	UVSSA	chr4	1343347	+	DGCR8	chr22	20073735	+
intron-intron	ENST00000296137	ENST00000379251		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-intron	ENST00000296137	ENST00000379253		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000296137	ENST00000379254		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000296137	ENST00000379270		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000296137	ENST00000489394		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-intron	ENST00000535325	ENST00000379251		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-intron	ENST00000535325	ENST00000379253		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000535325	ENST00000379254		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000535325	ENST00000379270		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000535325	ENST00000489394		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-intron	ENST00000438446	ENST00000379251		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-intron	ENST00000438446	ENST00000379253		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000438446	ENST00000379254		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000438446	ENST00000379270		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
intron-3UTR	ENST00000438446	ENST00000489394		ChiTaRS3.1			H56980	FYCO1	chr3	46000973	-	SAT1	chrX	23803976	+
5CDS-intron	ENST00000370355	ENST00000354883		ChiTaRS3.1			BP243784	SCD	chr10	102108082	+	SLC25A26	chr3	66430857	-
5CDS-intron	ENST00000370355	ENST00000336733		ChiTaRS3.1			BP243784	SCD	chr10	102108082	+	SLC25A26	chr3	66430857	-
5CDS-3UTR	ENST00000370355	ENST00000536651		ChiTaRS3.1			BP243784	SCD	chr10	102108082	+	SLC25A26	chr3	66430857	-
5CDS-intron	ENST00000370355	ENST00000413054		ChiTaRS3.1			BP243784	SCD	chr10	102108082	+	SLC25A26	chr3	66430857	-
5CDS-intron	ENST00000370355	ENST00000484768		ChiTaRS3.1			BP243784	SCD	chr10	102108082	+	SLC25A26	chr3	66430857	-
Frame-shit	ENST00000295897	ENST00000278407		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
In-frame	ENST00000295897	ENST00000340687		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000295897	ENST00000378323		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000295897	ENST00000378324		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000295897	ENST00000403558		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
5CDS-intron	ENST00000295897	ENST00000531605		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000415165	ENST00000278407		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000415165	ENST00000340687		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000415165	ENST00000378323		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000415165	ENST00000378324		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000415165	ENST00000403558		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-intron	ENST00000415165	ENST00000531605		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000503124	ENST00000278407		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000503124	ENST00000340687		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000503124	ENST00000378323		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000503124	ENST00000378324		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000503124	ENST00000403558		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-intron	ENST00000503124	ENST00000531605		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000509063	ENST00000278407		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
In-frame	ENST00000509063	ENST00000340687		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000509063	ENST00000378323		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000509063	ENST00000378324		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
Frame-shit	ENST00000509063	ENST00000403558		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
5CDS-intron	ENST00000509063	ENST00000531605		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000401494	ENST00000278407		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000401494	ENST00000340687		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000401494	ENST00000378323		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000401494	ENST00000378324		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-3CDS	ENST00000401494	ENST00000403558		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-intron	ENST00000401494	ENST00000531605		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
3UTR-3CDS	ENST00000505649	ENST00000278407		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
3UTR-3CDS	ENST00000505649	ENST00000340687		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
3UTR-3CDS	ENST00000505649	ENST00000378323		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
3UTR-3CDS	ENST00000505649	ENST00000378324		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
3UTR-3CDS	ENST00000505649	ENST00000403558		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
3UTR-intron	ENST00000505649	ENST00000531605		ChiTaRS3.1			BP294362	ALB	chr4	74274476	+	SERPING1	chr11	57381845	+
intron-intron	ENST00000465139	ENST00000408667		ChiTaRS3.1			AI990804	ANP32A	chr15	69076744	-	MIR548F1	chr1	186283134	-
intron-intron	ENST00000483551	ENST00000408667		ChiTaRS3.1			AI990804	ANP32A	chr15	69076744	-	MIR548F1	chr1	186283134	-
intron-intron	ENST00000560303	ENST00000408667		ChiTaRS3.1			AI990804	ANP32A	chr15	69076744	-	MIR548F1	chr1	186283134	-
3UTR-3UTR	ENST00000396613	ENST00000341319		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
3UTR-intron	ENST00000396613	ENST00000487643		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
intron-3UTR	ENST00000377959	ENST00000341319		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
intron-intron	ENST00000377959	ENST00000487643		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
3UTR-3UTR	ENST00000377960	ENST00000341319		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
3UTR-intron	ENST00000377960	ENST00000487643		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
3UTR-3UTR	ENST00000474050	ENST00000341319		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
3UTR-intron	ENST00000474050	ENST00000487643		ChiTaRS3.1			BE834616	GLIPR2	chr9	36162958	+	KLHL6	chr3	183206417	-
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			AK027645	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
Frame-shit	ENST00000406452	ENST00000256108		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000406452	ENST00000311489		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000406452	ENST00000449740		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5CDS-5UTR	ENST00000406452	ENST00000523710		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000523911	ENST00000256108		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
In-frame	ENST00000523911	ENST00000311489		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000523911	ENST00000449740		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5CDS-5UTR	ENST00000523911	ENST00000523710		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000519966	ENST00000256108		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000519966	ENST00000311489		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000519966	ENST00000449740		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5CDS-5UTR	ENST00000519966	ENST00000523710		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000430676	ENST00000256108		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000430676	ENST00000311489		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
Frame-shit	ENST00000430676	ENST00000449740		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5CDS-5UTR	ENST00000430676	ENST00000523710		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5UTR-3CDS	ENST00000518772	ENST00000256108		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5UTR-3CDS	ENST00000518772	ENST00000311489		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5UTR-3CDS	ENST00000518772	ENST00000449740		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
5UTR-5UTR	ENST00000518772	ENST00000523710		ChiTaRS3.1			BM480140	RMDN1	chr8	87519223	-	IMPA1	chr8	82572904	-
intron-3UTR	ENST00000572173	ENST00000485046		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000572173	ENST00000376369		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000572173	ENST00000196061		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000572992	ENST00000485046		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000572992	ENST00000376369		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000572992	ENST00000196061		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000381820	ENST00000485046		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000381820	ENST00000376369		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000381820	ENST00000196061		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000312499	ENST00000485046		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000312499	ENST00000376369		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000312499	ENST00000196061		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000576027	ENST00000485046		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000576027	ENST00000376369		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3UTR	ENST00000576027	ENST00000196061		ChiTaRS3.1			AL079828	RMI2	chr16	11375003	-	PLOD1	chr1	12012738	+
intron-3CDS	ENST00000355272	ENST00000216281		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000355272	ENST00000334701		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000355272	ENST00000441629		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-intron	ENST00000355272	ENST00000558600		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000356926	ENST00000216281		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000356926	ENST00000334701		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000356926	ENST00000441629		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-intron	ENST00000356926	ENST00000558600		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000350812	ENST00000216281		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000350812	ENST00000334701		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000350812	ENST00000441629		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-intron	ENST00000350812	ENST00000558600		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000345016	ENST00000216281		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000345016	ENST00000334701		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000345016	ENST00000441629		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-intron	ENST00000345016	ENST00000558600		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000590683	ENST00000216281		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000590683	ENST00000334701		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-3CDS	ENST00000590683	ENST00000441629		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
intron-intron	ENST00000590683	ENST00000558600		ChiTaRS3.1			BU171479	AP3D1	chr19	2115351	-	HSP90AA1	chr14	102551296	-
In-frame	ENST00000525364	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000270176	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000420247	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000533862	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000279270	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000524944	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000527009	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
intron-3CDS	ENST00000534462	ENST00000225964		ChiTaRS3.1			BF926669	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
5CDS-3UTR	ENST00000504968	ENST00000534336		ChiTaRS3.1			AV726458	SEC24B	chr4	110384622	+	MALAT1	chr11	65270650	+
5CDS-3UTR	ENST00000399100	ENST00000534336		ChiTaRS3.1			AV726458	SEC24B	chr4	110384622	+	MALAT1	chr11	65270650	+
5CDS-3UTR	ENST00000265175	ENST00000534336		ChiTaRS3.1			AV726458	SEC24B	chr4	110384622	+	MALAT1	chr11	65270650	+
5CDS-intron	ENST00000429029	ENST00000429124		ChiTaRS3.1			AW375983	DNAJB6	chr7	157155924	+	FTX	chrX	73470417	-
5CDS-intron	ENST00000262177	ENST00000429124		ChiTaRS3.1			AW375983	DNAJB6	chr7	157155924	+	FTX	chrX	73470417	-
intron-intron	ENST00000452797	ENST00000429124		ChiTaRS3.1			AW375983	DNAJB6	chr7	157155924	+	FTX	chrX	73470417	-
5CDS-intron	ENST00000443280	ENST00000429124		ChiTaRS3.1			AW375983	DNAJB6	chr7	157155924	+	FTX	chrX	73470417	-
intron-intron	ENST00000494267	ENST00000429124		ChiTaRS3.1			AW375983	DNAJB6	chr7	157155924	+	FTX	chrX	73470417	-
intron-3UTR	ENST00000216218	ENST00000230640		ChiTaRS3.1			AW794507	ST13	chr22	41221658	-	SKIV2L2	chr5	54720936	+
intron-intron	ENST00000216218	ENST00000545714		ChiTaRS3.1			AW794507	ST13	chr22	41221658	-	SKIV2L2	chr5	54720936	+
intron-intron	ENST00000216218	ENST00000504388		ChiTaRS3.1			AW794507	ST13	chr22	41221658	-	SKIV2L2	chr5	54720936	+
intron-3CDS	ENST00000266557	ENST00000356577		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-3CDS	ENST00000266557	ENST00000290239		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000266557	ENST00000381692		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000266557	ENST00000300278		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000266557	ENST00000381679		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000266557	ENST00000470533		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-3CDS	ENST00000541233	ENST00000356577		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-3CDS	ENST00000541233	ENST00000290239		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000541233	ENST00000381692		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000541233	ENST00000300278		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000541233	ENST00000381679		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-intron	ENST00000541233	ENST00000470533		ChiTaRS3.1			DB201269	CD27	chr12	6562443	+	SON	chr21	34925063	+
intron-3CDS	ENST00000302003	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000302003	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000302003	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000302003	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000344629	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000344629	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000344629	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000344629	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000349503	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000349503	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000349503	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000349503	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000302036	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000302036	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000302036	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000302036	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000339511	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000339511	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000339511	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000339511	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000436092	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000436092	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000436092	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000436092	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000449570	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000449570	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000449570	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000449570	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000302008	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000302008	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000302008	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000302008	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000383826	ENST00000373627		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000383826	ENST00000373616		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000383826	ENST00000471737		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-intron	ENST00000383826	ENST00000538808		ChiTaRS3.1			BQ184316	OGG1	chr3	9804597	+	MTCH1	chr6	36940526	+
intron-3CDS	ENST00000547302	ENST00000304992		ChiTaRS3.1			CA308327	RNASEK-C17orf49	chr17	6915987	-	PRPF8	chr17	1579845	+
intron-3CDS	ENST00000547302	ENST00000572621		ChiTaRS3.1			CA308327	RNASEK-C17orf49	chr17	6915987	-	PRPF8	chr17	1579845	+
intron-intron	ENST00000547302	ENST00000575116		ChiTaRS3.1			CA308327	RNASEK-C17orf49	chr17	6915987	-	PRPF8	chr17	1579845	+
5CDS-3UTR	ENST00000453996	ENST00000265563		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000453996	ENST00000454963		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000453996	ENST00000296446		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-3UTR	ENST00000378384	ENST00000265563		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000378384	ENST00000454963		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000378384	ENST00000296446		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-3UTR	ENST00000312060	ENST00000265563		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000312060	ENST00000454963		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000312060	ENST00000296446		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-3UTR	ENST00000567949	ENST00000265563		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000567949	ENST00000454963		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
5CDS-intron	ENST00000567949	ENST00000296446		ChiTaRS3.1			AK299521	CTU2	chr16	88779212	+	PRKAR2A	chr3	48786121	-
intron-3UTR	ENST00000379651	ENST00000336798		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000379651	ENST00000339394		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000379651	ENST00000471567		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-3UTR	ENST00000379643	ENST00000336798		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000379643	ENST00000339394		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000379643	ENST00000471567		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-3UTR	ENST00000543767	ENST00000336798		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000543767	ENST00000339394		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000543767	ENST00000471567		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-3UTR	ENST00000443379	ENST00000336798		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000443379	ENST00000339394		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000443379	ENST00000471567		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-3UTR	ENST00000452324	ENST00000336798		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000452324	ENST00000339394		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000452324	ENST00000471567		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-3UTR	ENST00000466145	ENST00000336798		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000466145	ENST00000339394		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000466145	ENST00000471567		ChiTaRS3.1			DA180215	MAP7D2	chrX	20134892	-	SDC3	chr1	31345634	-
intron-intron	ENST00000402363	ENST00000452313		ChiTaRS3.1			BE268088	NASP	chr1	46083996	+	NPIPB7	chr16	28845876	+
intron-intron	ENST00000537798	ENST00000452313		ChiTaRS3.1			BE268088	NASP	chr1	46083996	+	NPIPB7	chr16	28845876	+
3UTR-intron	ENST00000350030	ENST00000452313		ChiTaRS3.1			BE268088	NASP	chr1	46083996	+	NPIPB7	chr16	28845876	+
intron-intron	ENST00000372052	ENST00000452313		ChiTaRS3.1			BE268088	NASP	chr1	46083996	+	NPIPB7	chr16	28845876	+
intron-intron	ENST00000351223	ENST00000452313		ChiTaRS3.1			BE268088	NASP	chr1	46083996	+	NPIPB7	chr16	28845876	+
intron-intron	ENST00000530073	ENST00000452313		ChiTaRS3.1			BE268088	NASP	chr1	46083996	+	NPIPB7	chr16	28845876	+
intron-5UTR	ENST00000539627	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000604123	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
5UTR-5UTR	ENST00000413014	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000392002	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000436170	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000447302	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000544232	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000542945	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000356385	ENST00000450651		ChiTaRS3.1			DA489184	TMEM91	chr19	41870002	+	PI4KAP2	chr22	21846383	-
intron-5UTR	ENST00000395833	ENST00000292363		ChiTaRS3.1			BC013977	LMO2	chr11	33880912	-	RNF126	chr19	663177	-
intron-5UTR	ENST00000257818	ENST00000292363		ChiTaRS3.1			BC013977	LMO2	chr11	33880912	-	RNF126	chr19	663177	-
intron-5UTR	ENST00000493667	ENST00000292363		ChiTaRS3.1			BC013977	LMO2	chr11	33880912	-	RNF126	chr19	663177	-
5CDS-intron	ENST00000338380	ENST00000336498		ChiTaRS3.1			DB057222	SLPI	chr20	43882216	-	ARHGAP10	chr4	148963229	+
5CDS-intron	ENST00000338380	ENST00000414545		ChiTaRS3.1			DB057222	SLPI	chr20	43882216	-	ARHGAP10	chr4	148963229	+
5CDS-intron	ENST00000338380	ENST00000510076		ChiTaRS3.1			DB057222	SLPI	chr20	43882216	-	ARHGAP10	chr4	148963229	+
3UTR-3CDS	ENST00000381441	ENST00000318522		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-3CDS	ENST00000381441	ENST00000402711		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000381441	ENST00000482660		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000381441	ENST00000401738		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000381441	ENST00000453191		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-3CDS	ENST00000334635	ENST00000318522		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-3CDS	ENST00000334635	ENST00000402711		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000334635	ENST00000482660		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000334635	ENST00000401738		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000334635	ENST00000453191		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-3CDS	ENST00000513800	ENST00000318522		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-3CDS	ENST00000513800	ENST00000402711		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-intron	ENST00000513800	ENST00000482660		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-intron	ENST00000513800	ENST00000401738		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-intron	ENST00000513800	ENST00000453191		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-3CDS	ENST00000381437	ENST00000318522		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-3CDS	ENST00000381437	ENST00000402711		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000381437	ENST00000482660		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000381437	ENST00000401738		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-intron	ENST00000381437	ENST00000453191		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-3CDS	ENST00000451288	ENST00000318522		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-3CDS	ENST00000451288	ENST00000402711		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-intron	ENST00000451288	ENST00000482660		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-intron	ENST00000451288	ENST00000401738		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
intron-intron	ENST00000451288	ENST00000453191		ChiTaRS3.1			BE150925	DCUN1D4	chr4	52779981	+	EML4	chr2	42556033	+
3UTR-3UTR	ENST00000356978	ENST00000545225		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
3UTR-intron	ENST00000356978	ENST00000590720		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
3UTR-3UTR	ENST00000356978	ENST00000541124		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
3UTR-intron	ENST00000356978	ENST00000592578		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
3UTR-3UTR	ENST00000356978	ENST00000441946		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
3UTR-3UTR	ENST00000356978	ENST00000293362		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
3UTR-intron	ENST00000356978	ENST00000592169		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000447653	ENST00000545225		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000447653	ENST00000590720		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000447653	ENST00000541124		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000447653	ENST00000592578		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000447653	ENST00000441946		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000447653	ENST00000293362		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000447653	ENST00000592169		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000555132	ENST00000545225		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000555132	ENST00000590720		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000555132	ENST00000541124		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000555132	ENST00000592578		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000555132	ENST00000441946		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000555132	ENST00000293362		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000555132	ENST00000592169		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000553542	ENST00000545225		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000553542	ENST00000590720		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000553542	ENST00000541124		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000553542	ENST00000592578		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000553542	ENST00000441946		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000553542	ENST00000293362		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000553542	ENST00000592169		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000544280	ENST00000545225		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000544280	ENST00000590720		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000544280	ENST00000541124		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000544280	ENST00000592578		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000544280	ENST00000441946		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-3UTR	ENST00000544280	ENST00000293362		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000544280	ENST00000592169		ChiTaRS3.1			BF218294	CALM1	chr14	90872488	+	PSME3	chr17	40995163	+
intron-intron	ENST00000256104	ENST00000395938		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000256104	ENST00000312280		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000256104	ENST00000494511		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000256104	ENST00000395936		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000256104	ENST00000426385		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000518669	ENST00000395938		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000518669	ENST00000312280		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000518669	ENST00000494511		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000518669	ENST00000395936		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000518669	ENST00000426385		ChiTaRS3.1			BP317019	FABP4	chr8	82391673	-	PMP22	chr17	15143852	-
intron-intron	ENST00000540805	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000540805	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000540805	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000539194	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000539194	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000539194	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000447510	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000447510	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000447510	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000505450	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000505450	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000505450	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000508167	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000508167	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000508167	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000510224	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000510224	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000510224	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000543373	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000543373	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000543373	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000502943	ENST00000358290		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000502943	ENST00000507518		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-intron	ENST00000502943	ENST00000507286		ChiTaRS3.1			BF825079	PROM1	chr4	15970941	-	HSD17B11	chr4	88289159	-
intron-5UTR	ENST00000363840	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000363840	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000363840	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-5UTR	ENST00000365524	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000365524	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000365524	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-5UTR	ENST00000364822	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000364822	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000364822	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-5UTR	ENST00000363859	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000363859	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000363859	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-5UTR	ENST00000385578	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000385578	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000385578	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-5UTR	ENST00000363146	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000363146	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000363146	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-5UTR	ENST00000364084	ENST00000373203		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000364084	ENST00000344849		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-intron	ENST00000364084	ENST00000480266		ChiTaRS3.1			DA942626	GAS5	chr1	173834761	-	ENG	chr9	130616937	-
intron-3UTR	ENST00000398868	ENST00000400274		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000398868	ENST00000427143		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000398868	ENST00000318711		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000398868	ENST00000417564		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000398868	ENST00000457905		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000398868	ENST00000466639		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000398868	ENST00000435722		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000398868	ENST00000479654		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000332645	ENST00000400274		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000332645	ENST00000427143		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000332645	ENST00000318711		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000332645	ENST00000417564		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000332645	ENST00000457905		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000332645	ENST00000466639		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000332645	ENST00000435722		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000332645	ENST00000479654		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000538786	ENST00000400274		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000538786	ENST00000427143		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000538786	ENST00000318711		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000538786	ENST00000417564		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000538786	ENST00000457905		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000538786	ENST00000466639		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000538786	ENST00000435722		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000538786	ENST00000479654		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000535789	ENST00000400274		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000535789	ENST00000427143		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000535789	ENST00000318711		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000535789	ENST00000417564		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000535789	ENST00000457905		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000535789	ENST00000466639		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-intron	ENST00000535789	ENST00000435722		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3UTR	ENST00000535789	ENST00000479654		ChiTaRS3.1			BE613732	ATL3	chr11	63393615	-	DIP2A	chr21	47988181	+
intron-3CDS	ENST00000333188	ENST00000322776		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000333188	ENST00000532303		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000333188	ENST00000529927		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000333188	ENST00000415352		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000333188	ENST00000526169		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-3CDS	ENST00000507777	ENST00000322776		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000507777	ENST00000532303		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000507777	ENST00000529927		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000507777	ENST00000415352		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000507777	ENST00000526169		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-3CDS	ENST00000510491	ENST00000322776		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000510491	ENST00000532303		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000510491	ENST00000529927		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000510491	ENST00000415352		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-intron	ENST00000510491	ENST00000526169		ChiTaRS3.1			CA420159	COPB2	chr3	139077892	+	NDUFV1	chr11	67375904	-
intron-3CDS	ENST00000578844	ENST00000337195		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3CDS	ENST00000578844	ENST00000531469		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3CDS	ENST00000578844	ENST00000494626		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3CDS	ENST00000578844	ENST00000411419		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-intron	ENST00000578844	ENST00000476817		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-intron	ENST00000578844	ENST00000309035		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-intron	ENST00000578844	ENST00000334808		ChiTaRS3.1			AU134210	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
5UTR-intron	ENST00000341724	ENST00000539054		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000341724	ENST00000379757		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000341724	ENST00000473453		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000372004	ENST00000539054		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000372004	ENST00000379757		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000372004	ENST00000473453		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000371998	ENST00000539054		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000371998	ENST00000379757		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000371998	ENST00000473453		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000371997	ENST00000539054		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000371997	ENST00000379757		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
5UTR-intron	ENST00000371997	ENST00000473453		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
intron-intron	ENST00000497292	ENST00000539054		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
intron-intron	ENST00000497292	ENST00000379757		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
intron-intron	ENST00000497292	ENST00000473453		ChiTaRS3.1			DB144841	NCOA3	chr20	46130763	+	TXNDC5	chr6	8002806	-
3UTR-5UTR	ENST00000435275	ENST00000418342		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000435275	ENST00000302291		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000435275	ENST00000314174		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000435275	ENST00000374623		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000440692	ENST00000418342		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000440692	ENST00000302291		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000440692	ENST00000314174		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000440692	ENST00000374623		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000372360	ENST00000418342		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000372360	ENST00000302291		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000372360	ENST00000314174		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000372360	ENST00000374623		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000476545	ENST00000418342		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000476545	ENST00000302291		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000476545	ENST00000314174		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-5UTR	ENST00000476545	ENST00000374623		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000360830	ENST00000418342		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000360830	ENST00000302291		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000360830	ENST00000314174		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
3UTR-5UTR	ENST00000360830	ENST00000374623		ChiTaRS3.1			BG489521	RPS24	chr10	79800399	+	LUZP1	chr1	23420874	-
intron-3CDS	ENST00000267163	ENST00000358807		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-3CDS	ENST00000267163	ENST00000358577		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-3CDS	ENST00000267163	ENST00000368952		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-intron	ENST00000267163	ENST00000483856		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-3CDS	ENST00000484879	ENST00000358807		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-3CDS	ENST00000484879	ENST00000358577		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-3CDS	ENST00000484879	ENST00000368952		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-intron	ENST00000484879	ENST00000483856		ChiTaRS3.1			AL048511	RB1	chr13	48986562	-	MICAL1	chr6	109768640	-
intron-3CDS	ENST00000318325	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000318325	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370241	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370241	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370242	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370242	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000299179	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000299179	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000342071	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000342071	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370236	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370236	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000493646	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000493646	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000477279	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000477279	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000318364	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000318364	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370234	ENST00000257013		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370234	ENST00000464369		ChiTaRS3.1			AI087848	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3UTR	ENST00000358691	ENST00000331483		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000358691	ENST00000576390		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000358691	ENST00000439918		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000358691	ENST00000472244		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-3UTR	ENST00000580168	ENST00000331483		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000580168	ENST00000576390		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000580168	ENST00000439918		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000580168	ENST00000472244		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-3UTR	ENST00000580662	ENST00000331483		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000580662	ENST00000576390		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000580662	ENST00000439918		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-intron	ENST00000580662	ENST00000472244		ChiTaRS3.1			BE878135	HELZ	chr17	65069444	-	P4HB	chr17	79801151	-
intron-3CDS	ENST00000206423	ENST00000341459		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-intron	ENST00000206423	ENST00000482911		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-intron	ENST00000206423	ENST00000449382		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-3CDS	ENST00000439685	ENST00000341459		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-intron	ENST00000439685	ENST00000482911		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-intron	ENST00000439685	ENST00000449382		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-3CDS	ENST00000475181	ENST00000341459		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-intron	ENST00000475181	ENST00000482911		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-intron	ENST00000475181	ENST00000449382		ChiTaRS3.1			AA625303	CCDC80	chr3	112324124	-	SLC24A5	chr15	48433369	+
intron-5UTR	ENST00000377795	ENST00000299855		ChiTaRS3.1			DA976094	CD74	chr5	149792262	-	MMP3	chr11	102714338	-
intron-5UTR	ENST00000353334	ENST00000299855		ChiTaRS3.1			DA976094	CD74	chr5	149792262	-	MMP3	chr11	102714338	-
intron-5UTR	ENST00000524315	ENST00000299855		ChiTaRS3.1			DA976094	CD74	chr5	149792262	-	MMP3	chr11	102714338	-
intron-5UTR	ENST00000009530	ENST00000299855		ChiTaRS3.1			DA976094	CD74	chr5	149792262	-	MMP3	chr11	102714338	-
5UTR-3CDS	ENST00000419071	ENST00000434571		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
5UTR-3CDS	ENST00000419071	ENST00000367579		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
5UTR-3CDS	ENST00000419071	ENST00000282990		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
5UTR-3CDS	ENST00000419071	ENST00000367580		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
5UTR-3UTR	ENST00000419071	ENST00000438435		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000268835	ENST00000434571		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000268835	ENST00000367579		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000268835	ENST00000282990		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000268835	ENST00000367580		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3UTR	ENST00000268835	ENST00000438435		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000536323	ENST00000434571		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000536323	ENST00000367579		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000536323	ENST00000282990		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000536323	ENST00000367580		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3UTR	ENST00000536323	ENST00000438435		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000542013	ENST00000434571		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000542013	ENST00000367579		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000542013	ENST00000282990		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000542013	ENST00000367580		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3UTR	ENST00000542013	ENST00000438435		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000575337	ENST00000434571		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000575337	ENST00000367579		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000575337	ENST00000282990		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3CDS	ENST00000575337	ENST00000367580		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
intron-3UTR	ENST00000575337	ENST00000438435		ChiTaRS3.1			CD244248	PRPSAP2	chr17	18759743	+	MR1	chr1	181018187	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			S72479	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			S72479	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
In-frame	ENST00000398512	ENST00000318560		ChiTaRS3.1			S72479	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			S72479	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
intron-3UTR	ENST00000424120	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000413206	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000503292	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000389652	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
3UTR-3UTR	ENST00000438599	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
3UTR-3UTR	ENST00000511544	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000513811	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
5CDS-3UTR	ENST00000507954	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
5CDS-3UTR	ENST00000515124	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
3UTR-3UTR	ENST00000503658	ENST00000327470		ChiTaRS3.1			BC017792	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000347364	ENST00000323523		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000347364	ENST00000403410		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000347364	ENST00000462884		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000399054	ENST00000323523		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000399054	ENST00000403410		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000399054	ENST00000462884		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000609375	ENST00000323523		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000609375	ENST00000403410		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000609375	ENST00000462884		ChiTaRS3.1			BQ376956	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000394936	ENST00000316763		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000377011		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000599538		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000443401		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000601341		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000594948		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000601912		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000594092		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000593919		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394936	ENST00000424804		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000316763		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000377011		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000599538		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000443401		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000601341		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000594948		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000601912		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000594092		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000593919		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-intron	ENST00000394934	ENST00000424804		ChiTaRS3.1			BF918002	PSAP	chr10	73576874	-	VRK3	chr19	50506494	-
intron-5UTR	ENST00000397887	ENST00000418604		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000397887	ENST00000303958		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000397887	ENST00000361621		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-intron	ENST00000397887	ENST00000466486		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000330938	ENST00000418604		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000330938	ENST00000303958		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000330938	ENST00000361621		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-intron	ENST00000330938	ENST00000466486		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000445724	ENST00000418604		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000445724	ENST00000303958		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000445724	ENST00000361621		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-intron	ENST00000445724	ENST00000466486		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000397886	ENST00000418604		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000397886	ENST00000303958		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000397886	ENST00000361621		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-intron	ENST00000397886	ENST00000466486		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000494690	ENST00000418604		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000494690	ENST00000303958		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-5UTR	ENST00000494690	ENST00000361621		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
intron-intron	ENST00000494690	ENST00000466486		ChiTaRS3.1			DA415824	PTTG1IP	chr21	46284813	-	PLP1	chrX	103031845	+
3UTR-intron	ENST00000602699	ENST00000444264		ChiTaRS3.1			CN274377	TDGF1P3	chrX	109765819	+	TDGF1	chr3	46622853	+
3UTR-3UTR	ENST00000602699	ENST00000542931		ChiTaRS3.1			CN274377	TDGF1P3	chrX	109765819	+	TDGF1	chr3	46622853	+
3UTR-3UTR	ENST00000602699	ENST00000296145		ChiTaRS3.1			CN274377	TDGF1P3	chrX	109765819	+	TDGF1	chr3	46622853	+
5CDS-5UTR	ENST00000283928	ENST00000356195		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
5CDS-5UTR	ENST00000283928	ENST00000406877		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
5CDS-5UTR	ENST00000283928	ENST00000373934		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
5CDS-5UTR	ENST00000283928	ENST00000465490		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
intron-5UTR	ENST00000466516	ENST00000356195		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
intron-5UTR	ENST00000466516	ENST00000406877		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
intron-5UTR	ENST00000466516	ENST00000373934		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
intron-5UTR	ENST00000466516	ENST00000465490		ChiTaRS3.1			DA303712	JAZF1	chr7	28220082	-	CDCA7L	chr7	21956513	-
5CDS-3UTR	ENST00000256442	ENST00000492622		ChiTaRS3.1			BI462019	CCNB1	chr5	68464123	+	FNDC3A	chr13	49781684	+
5CDS-3UTR	ENST00000256442	ENST00000541916		ChiTaRS3.1			BI462019	CCNB1	chr5	68464123	+	FNDC3A	chr13	49781684	+
5CDS-3UTR	ENST00000256442	ENST00000398316		ChiTaRS3.1			BI462019	CCNB1	chr5	68464123	+	FNDC3A	chr13	49781684	+
intron-3CDS	ENST00000369158	ENST00000376281		ChiTaRS3.1			BC063540	HIST2H3C	chr1	149812261	-	HNRNPK	chr9	86585150	-
intron-3CDS	ENST00000369158	ENST00000376263		ChiTaRS3.1			BC063540	HIST2H3C	chr1	149812261	-	HNRNPK	chr9	86585150	-
intron-3CDS	ENST00000369158	ENST00000376264		ChiTaRS3.1			BC063540	HIST2H3C	chr1	149812261	-	HNRNPK	chr9	86585150	-
intron-3CDS	ENST00000369158	ENST00000351839		ChiTaRS3.1			BC063540	HIST2H3C	chr1	149812261	-	HNRNPK	chr9	86585150	-
intron-3CDS	ENST00000369158	ENST00000360384		ChiTaRS3.1			BC063540	HIST2H3C	chr1	149812261	-	HNRNPK	chr9	86585150	-
intron-5UTR	ENST00000417009	ENST00000319622		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000565184		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000389093		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000335181		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000568883		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000449901		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000565154		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000417009	ENST00000568459		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-5UTR	ENST00000444799	ENST00000319622		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000565184		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000389093		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000335181		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000568883		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000449901		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000565154		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000444799	ENST00000568459		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-5UTR	ENST00000413065	ENST00000319622		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000565184		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000389093		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000335181		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000568883		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000449901		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000565154		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000413065	ENST00000568459		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-5UTR	ENST00000248566	ENST00000319622		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000565184		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000389093		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000335181		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000568883		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000449901		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000565154		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000248566	ENST00000568459		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-5UTR	ENST00000493858	ENST00000319622		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000565184		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000389093		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000335181		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000568883		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000449901		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000565154		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000493858	ENST00000568459		ChiTaRS3.1			BM828121	SHFM1	chr7	96329921	-	PKM	chr15	72523542	-
intron-intron	ENST00000550067	ENST00000295874		ChiTaRS3.1			AK027551	SCYL2	chr12	100733190	+	PTPRG	chr3	61728149	-
intron-intron	ENST00000550067	ENST00000474889		ChiTaRS3.1			AK027551	SCYL2	chr12	100733190	+	PTPRG	chr3	61728149	-
intron-intron	ENST00000550067	ENST00000495879		ChiTaRS3.1			AK027551	SCYL2	chr12	100733190	+	PTPRG	chr3	61728149	-
3UTR-intron	ENST00000360820	ENST00000295874		ChiTaRS3.1			AK027551	SCYL2	chr12	100733190	+	PTPRG	chr3	61728149	-
3UTR-intron	ENST00000360820	ENST00000474889		ChiTaRS3.1			AK027551	SCYL2	chr12	100733190	+	PTPRG	chr3	61728149	-
3UTR-intron	ENST00000360820	ENST00000495879		ChiTaRS3.1			AK027551	SCYL2	chr12	100733190	+	PTPRG	chr3	61728149	-
intron-3CDS	ENST00000434513	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000434513	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000361221	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000361221	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000452522	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000452522	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000375415	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000375415	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000375420	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000375420	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000469726	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000469726	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000375408	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000375408	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-3CDS	ENST00000167825	ENST00000307751		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
intron-intron	ENST00000167825	ENST00000597803		ChiTaRS3.1			BG981808	ARHGEF10L	chr1	17909092	+	LGALS4	chr19	39292540	-
5CDS-intron	ENST00000358344	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000358344	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000506339	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000506339	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000355836	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000355836	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000514633	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000514633	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000515193	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000515193	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000506259	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000506259	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000504898	ENST00000354725		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
5CDS-intron	ENST00000504898	ENST00000467238		ChiTaRS3.1			BF309478	HNRNPAB	chr5	177632936	+	SND1	chr7	127591552	+
intron-3CDS	ENST00000381809	ENST00000462484		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-5UTR	ENST00000381809	ENST00000334856		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-5UTR	ENST00000381809	ENST00000460843		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-3UTR	ENST00000381809	ENST00000371394		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
5UTR-3CDS	ENST00000359883	ENST00000462484		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
5UTR-5UTR	ENST00000359883	ENST00000334856		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
5UTR-5UTR	ENST00000359883	ENST00000460843		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
5UTR-3UTR	ENST00000359883	ENST00000371394		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-3CDS	ENST00000447596	ENST00000462484		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-5UTR	ENST00000447596	ENST00000334856		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-5UTR	ENST00000447596	ENST00000460843		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
intron-3UTR	ENST00000447596	ENST00000371394		ChiTaRS3.1			DA687483	AK3	chr9	4741972	-	EHMT1	chr9	140611076	+
In-frame	ENST00000381668	ENST00000509081		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
In-frame	ENST00000381668	ENST00000264400		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
In-frame	ENST00000381668	ENST00000335927		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
5CDS-intron	ENST00000381668	ENST00000436139		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
5CDS-intron	ENST00000381668	ENST00000514889		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
In-frame	ENST00000264449	ENST00000509081		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
In-frame	ENST00000264449	ENST00000264400		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
In-frame	ENST00000264449	ENST00000335927		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
5CDS-intron	ENST00000264449	ENST00000436139		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
5CDS-intron	ENST00000264449	ENST00000514889		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
intron-3CDS	ENST00000510289	ENST00000509081		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
intron-3CDS	ENST00000510289	ENST00000264400		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
intron-3CDS	ENST00000510289	ENST00000335927		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
intron-intron	ENST00000510289	ENST00000436139		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
intron-intron	ENST00000510289	ENST00000514889		ChiTaRS3.1			AK295616	ATP8A1	chr4	42545934	-	RASGEF1B	chr4	82369438	-
intron-5UTR	ENST00000449985	ENST00000382582		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000355994		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000397875		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000397866		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000397865		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000527041		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-intron	ENST00000449985	ENST00000359645		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000528160		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000397869		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000354542		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000526111		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000580402		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000579129		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000578193		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000397863		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000397860		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000449985	ENST00000487778		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000382582		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000355994		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000397875		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000397866		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000397865		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000527041		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-intron	ENST00000532998	ENST00000359645		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000528160		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000397869		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000354542		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000526111		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000580402		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000579129		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000578193		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000397863		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000397860		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000532998	ENST00000487778		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000382582		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000355994		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000397875		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000397866		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000397865		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000527041		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-intron	ENST00000437139	ENST00000359645		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000528160		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000397869		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000354542		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000526111		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000580402		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000579129		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000578193		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000397863		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000397860		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000437139	ENST00000487778		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000382582		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000355994		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000397875		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000397866		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000397865		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000527041		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-intron	ENST00000533070	ENST00000359645		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000528160		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000397869		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000354542		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000526111		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000580402		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000579129		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000578193		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000397863		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000397860		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000533070	ENST00000487778		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000382582		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000355994		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000397875		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000397866		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000397865		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000527041		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-intron	ENST00000316425	ENST00000359645		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000528160		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000397869		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000354542		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000526111		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000580402		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000579129		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000578193		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000397863		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000397860		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000316425	ENST00000487778		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000382582		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000355994		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000397875		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000397866		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000397865		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000527041		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-intron	ENST00000431792	ENST00000359645		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000528160		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000397869		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000354542		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000526111		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000580402		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000579129		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000578193		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000397863		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000397860		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000431792	ENST00000487778		ChiTaRS3.1			DB178316	TMEM107	chr17	8076769	-	MBP	chr18	74729011	-
intron-3CDS	ENST00000384165	ENST00000350721		ChiTaRS3.1			DW440900	RNU6-42P	chr3	180949632	+	ATR	chr3	142224037	-
intron-3CDS	ENST00000384165	ENST00000383101		ChiTaRS3.1			DW440900	RNU6-42P	chr3	180949632	+	ATR	chr3	142224037	-
intron-3UTR	ENST00000353704	ENST00000243563		ChiTaRS3.1			CD366322	CREB3	chr9	35737107	+	SNRPA	chr19	41271104	-
intron-intron	ENST00000353704	ENST00000599570		ChiTaRS3.1			CD366322	CREB3	chr9	35737107	+	SNRPA	chr19	41271104	-
intron-3UTR	ENST00000486056	ENST00000243563		ChiTaRS3.1			CD366322	CREB3	chr9	35737107	+	SNRPA	chr19	41271104	-
intron-intron	ENST00000486056	ENST00000599570		ChiTaRS3.1			CD366322	CREB3	chr9	35737107	+	SNRPA	chr19	41271104	-
intron-3CDS	ENST00000324068	ENST00000300527		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000324068	ENST00000310645		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000324068	ENST00000357838		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000324068	ENST00000409416		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000324068	ENST00000397763		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-intron	ENST00000324068	ENST00000460886		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000541758	ENST00000300527		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000541758	ENST00000310645		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000541758	ENST00000357838		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000541758	ENST00000409416		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-3CDS	ENST00000541758	ENST00000397763		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-intron	ENST00000541758	ENST00000460886		ChiTaRS3.1			CN351992	CAPN6	chrX	110507020	-	COL6A2	chr21	47531447	+
intron-5UTR	ENST00000373894	ENST00000560829		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373894	ENST00000353874		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373894	ENST00000261889		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373894	ENST00000559844		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373894	ENST00000561026		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-intron	ENST00000373894	ENST00000559339		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373888	ENST00000560829		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373888	ENST00000353874		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373888	ENST00000261889		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373888	ENST00000559844		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000373888	ENST00000561026		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-intron	ENST00000373888	ENST00000559339		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000466793	ENST00000560829		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000466793	ENST00000353874		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000466793	ENST00000261889		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000466793	ENST00000559844		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000466793	ENST00000561026		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-intron	ENST00000466793	ENST00000559339		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000549094	ENST00000560829		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000549094	ENST00000353874		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000549094	ENST00000261889		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000549094	ENST00000559844		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000549094	ENST00000561026		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-intron	ENST00000549094	ENST00000559339		ChiTaRS3.1			DA812972	SMPDL3B	chr1	28269989	+	SNX1	chr15	64404777	+
intron-5UTR	ENST00000323963	ENST00000368301		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000323963	ENST00000361308		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000323963	ENST00000347559		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000323963	ENST00000368300		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000323963	ENST00000368299		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000323963	ENST00000448611		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000323963	ENST00000368297		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000323963	ENST00000473598		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000323963	ENST00000392353		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000323963	ENST00000496738		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000440191	ENST00000368301		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000440191	ENST00000361308		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000440191	ENST00000347559		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000440191	ENST00000368300		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000440191	ENST00000368299		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000440191	ENST00000448611		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000440191	ENST00000368297		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000440191	ENST00000473598		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000440191	ENST00000392353		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000440191	ENST00000496738		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000356531	ENST00000368301		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000356531	ENST00000361308		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000356531	ENST00000347559		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000356531	ENST00000368300		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-5UTR	ENST00000356531	ENST00000368299		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000356531	ENST00000448611		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000356531	ENST00000368297		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000356531	ENST00000473598		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000356531	ENST00000392353		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-intron	ENST00000356531	ENST00000496738		ChiTaRS3.1			DA558800	EIF4A2	chr3	186505539	+	LMNA	chr1	156084526	+
intron-3CDS	ENST00000560410	ENST00000520552		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000335659		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519597		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000520311		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000560410	ENST00000519316		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000560410	ENST00000524319		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520552		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000335659		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519597		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000520311		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000216802	ENST00000519316		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000216802	ENST00000524319		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520552		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000335659		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519597		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000520311		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-3CDS	ENST00000471700	ENST00000519316		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-intron	ENST00000471700	ENST00000524319		ChiTaRS3.1			AV651374	PSME2	chr14	24614462	-	ANKRD46	chr8	101534921	-
intron-5UTR	ENST00000222002	ENST00000367698		ChiTaRS3.1			AF130100	SULT2A1	chr19	48374086	-	SERPINC1	chr1	173886473	-
intron-intron	ENST00000222002	ENST00000494024		ChiTaRS3.1			AF130100	SULT2A1	chr19	48374086	-	SERPINC1	chr1	173886473	-
intron-5UTR	ENST00000318238	ENST00000319622		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000318238	ENST00000565184		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000318238	ENST00000389093		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000318238	ENST00000335181		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000318238	ENST00000568883		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000318238	ENST00000449901		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000318238	ENST00000565154		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000318238	ENST00000568459		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000411955	ENST00000319622		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000411955	ENST00000565184		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000411955	ENST00000389093		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000411955	ENST00000335181		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000411955	ENST00000568883		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000411955	ENST00000449901		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000411955	ENST00000565154		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000411955	ENST00000568459		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000437805	ENST00000319622		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000437805	ENST00000565184		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000437805	ENST00000389093		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000437805	ENST00000335181		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000437805	ENST00000568883		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000437805	ENST00000449901		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000437805	ENST00000565154		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000437805	ENST00000568459		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000477816	ENST00000319622		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000477816	ENST00000565184		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000477816	ENST00000389093		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-5UTR	ENST00000477816	ENST00000335181		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000477816	ENST00000568883		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000477816	ENST00000449901		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000477816	ENST00000565154		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
intron-intron	ENST00000477816	ENST00000568459		ChiTaRS3.1			DA983039	SAMD9L	chr7	92772681	-	PKM	chr15	72523531	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			X98708	COL1A1	chr17	48269835	-	PDGFB	chr22	39631882	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			X98708	COL1A1	chr17	48269835	-	PDGFB	chr22	39631882	-
intron-3CDS	ENST00000256637	ENST00000396153		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
intron-3CDS	ENST00000256637	ENST00000371778		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
intron-3CDS	ENST00000256637	ENST00000545823		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
intron-5UTR	ENST00000256637	ENST00000472808		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-3CDS	ENST00000538502	ENST00000396153		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-3CDS	ENST00000538502	ENST00000371778		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-3CDS	ENST00000538502	ENST00000545823		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-5UTR	ENST00000538502	ENST00000472808		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-3CDS	ENST00000482236	ENST00000396153		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-3CDS	ENST00000482236	ENST00000371778		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-3CDS	ENST00000482236	ENST00000545823		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
5UTR-5UTR	ENST00000482236	ENST00000472808		ChiTaRS3.1			DB467995	SORT1	chr1	109935649	-	FAF1	chr1	51061890	-
3UTR-3CDS	ENST00000370350	ENST00000186436		ChiTaRS3.1			AK057369	FATE1	chrX	150891630	+	TMEM131	chr2	98373655	-
3UTR-intron	ENST00000370350	ENST00000425805		ChiTaRS3.1			AK057369	FATE1	chrX	150891630	+	TMEM131	chr2	98373655	-
5UTR-5UTR	ENST00000472863	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000472863	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000472863	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000472863	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000472863	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000472863	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000472863	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000498678	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000460160	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
5UTR-5UTR	ENST00000476342	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000552000	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000470495	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000311626	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000490677	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000485909	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000489475	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000380393		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000216877		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000358719		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000399903		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000425918		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000318266		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
intron-5UTR	ENST00000465120	ENST00000356147		ChiTaRS3.1			DA748390	HOXB3	chr17	46667485	-	PTPRA	chr20	2903853	+
In-frame	ENST00000246802	ENST00000366835		ChiTaRS3.1			BM561692	GLTSCR2	chr19	48249041	+	TMEM63A	chr1	226047050	-
5CDS-intron	ENST00000246802	ENST00000474478		ChiTaRS3.1			BM561692	GLTSCR2	chr19	48249041	+	TMEM63A	chr1	226047050	-
5CDS-intron	ENST00000246802	ENST00000537914		ChiTaRS3.1			BM561692	GLTSCR2	chr19	48249041	+	TMEM63A	chr1	226047050	-
3UTR-3CDS	ENST00000598681	ENST00000366835		ChiTaRS3.1			BM561692	GLTSCR2	chr19	48249041	+	TMEM63A	chr1	226047050	-
3UTR-intron	ENST00000598681	ENST00000474478		ChiTaRS3.1			BM561692	GLTSCR2	chr19	48249041	+	TMEM63A	chr1	226047050	-
3UTR-intron	ENST00000598681	ENST00000537914		ChiTaRS3.1			BM561692	GLTSCR2	chr19	48249041	+	TMEM63A	chr1	226047050	-
3UTR-3CDS	ENST00000427140	ENST00000458659		ChiTaRS3.1			CD512862	APCDD1L-AS1	chr20	57090796	+	TSC22D1	chr13	45010232	-
3UTR-intron	ENST00000427140	ENST00000501704		ChiTaRS3.1			CD512862	APCDD1L-AS1	chr20	57090796	+	TSC22D1	chr13	45010232	-
3UTR-intron	ENST00000427140	ENST00000261489		ChiTaRS3.1			CD512862	APCDD1L-AS1	chr20	57090796	+	TSC22D1	chr13	45010232	-
3UTR-intron	ENST00000427140	ENST00000460842		ChiTaRS3.1			CD512862	APCDD1L-AS1	chr20	57090796	+	TSC22D1	chr13	45010232	-
intron-3UTR	ENST00000324238	ENST00000370620		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000324238	ENST00000370622		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000324238	ENST00000250617		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-intron	ENST00000324238	ENST00000535227		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000544695	ENST00000370620		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000544695	ENST00000370622		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000544695	ENST00000250617		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-intron	ENST00000544695	ENST00000535227		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000577725	ENST00000370620		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000577725	ENST00000370622		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-3UTR	ENST00000577725	ENST00000250617		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
intron-intron	ENST00000577725	ENST00000535227		ChiTaRS3.1			AA236755	CRLF3	chr17	29110610	-	ARHGEF6	chrX	135748568	-
5UTR-3CDS	ENST00000221476	ENST00000307128		ChiTaRS3.1			BF693845	CKM	chr19	45826079	-	MYOZ2	chr4	120079264	+
intron-3CDS	ENST00000398571	ENST00000439977		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3CDS	ENST00000398571	ENST00000300302		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-intron	ENST00000398571	ENST00000344114		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3UTR	ENST00000398571	ENST00000570273		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3UTR	ENST00000398571	ENST00000379792		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3CDS	ENST00000472689	ENST00000439977		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3CDS	ENST00000472689	ENST00000300302		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-intron	ENST00000472689	ENST00000344114		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3UTR	ENST00000472689	ENST00000570273		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3UTR	ENST00000472689	ENST00000379792		ChiTaRS3.1			AA419424	USP34	chr2	61575559	-	HERPUD1	chr16	56973904	+
intron-3CDS	ENST00000363315	ENST00000023939		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-3CDS	ENST00000363315	ENST00000395881		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-3CDS	ENST00000363315	ENST00000357348		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-intron	ENST00000363315	ENST00000484084		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-intron	ENST00000363315	ENST00000435342		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-3CDS	ENST00000364968	ENST00000023939		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-3CDS	ENST00000364968	ENST00000395881		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-3CDS	ENST00000364968	ENST00000357348		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-intron	ENST00000364968	ENST00000484084		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
intron-intron	ENST00000364968	ENST00000435342		ChiTaRS3.1			CB107148	SNHG16	chr17	74554635	+	RTFDC1	chr20	55059209	+
3UTR-5UTR	ENST00000387069	ENST00000367837		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000527578		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000415177		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000367826		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000367824		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000445176		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000314674		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-5UTR	ENST00000387069	ENST00000367822		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000367820		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-5UTR	ENST00000387069	ENST00000525067		ChiTaRS3.1			DB132651	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-3CDS	ENST00000591462	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000591462	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000591462	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000591462	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000252455	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000252455	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000252455	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000252455	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000412601	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000412601	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000412601	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000412601	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000592741	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000592741	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000592741	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000592741	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000587327	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000587327	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000587327	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000587327	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000589838	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000589838	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000589838	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000589838	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000591510	ENST00000302351		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-3CDS	ENST00000591510	ENST00000510316		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000591510	ENST00000509284		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
3UTR-intron	ENST00000591510	ENST00000537006		ChiTaRS3.1			AI467862	PRKCSH	chr19	11561643	-	ENC1	chr5	73931210	+
intron-3CDS	ENST00000418931	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000418931	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000418931	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000418931	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000418931	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000535465	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000535465	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000535465	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000535465	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000535465	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000471184	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000471184	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000471184	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000471184	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000471184	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000411749	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411749	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411749	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411749	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000411749	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000441981	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000441981	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000441981	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000441981	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000441981	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000474044	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000474044	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000474044	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000474044	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000474044	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000550949	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000550949	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000550949	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000550949	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000550949	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000383102	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000383102	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000383102	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000383102	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000383102	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000441857	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000441857	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000441857	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000441857	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000441857	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000551599	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000551599	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000551599	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000551599	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000551599	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000548608	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548608	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548608	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548608	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000548608	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000492916	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000492916	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000492916	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000492916	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000492916	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000454006	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000454006	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000454006	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000454006	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000454006	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000411424	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411424	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411424	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411424	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000411424	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000548235	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548235	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548235	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548235	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000548235	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000472101	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000472101	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000472101	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000472101	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000472101	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000425130	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000425130	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000425130	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000425130	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000425130	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000411558	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411558	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411558	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000411558	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000411558	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000481615	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000481615	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000481615	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000481615	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000481615	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000553195	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000553195	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000553195	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000553195	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000553195	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000399500	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000399500	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000399500	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000399500	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000399500	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000399491	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000399491	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000399491	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000399491	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000399491	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000548907	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548907	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548907	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548907	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000548907	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000469961	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000469961	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000469961	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000469961	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000469961	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000415996	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000415996	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000415996	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000415996	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000415996	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000447783	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000447783	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000447783	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000447783	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000447783	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000548074	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548074	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548074	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000548074	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000548074	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000491972	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000491972	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000491972	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000491972	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000491972	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-3CDS	ENST00000433800	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000433800	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000433800	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000433800	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-intron	ENST00000433800	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-3CDS	ENST00000444931	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000444931	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000444931	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000444931	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-intron	ENST00000444931	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-3CDS	ENST00000552574	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000552574	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000552574	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-5UTR	ENST00000552574	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-intron	ENST00000552574	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-3CDS	ENST00000461155	ENST00000297494		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000461155	ENST00000461406		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000461155	ENST00000484524		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-5UTR	ENST00000461155	ENST00000467517		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
intron-intron	ENST00000461155	ENST00000477227		ChiTaRS3.1			BU754328	HLA-DPB1	chr6	4535001	-	NOS3	chr7	150692384	-
3UTR-intron	ENST00000595437	ENST00000527132		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000595437	ENST00000396505		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000595437	ENST00000326932		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000595437	ENST00000525493		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000595437	ENST00000450094		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000376586	ENST00000527132		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000376586	ENST00000396505		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000376586	ENST00000326932		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000376586	ENST00000525493		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000376586	ENST00000450094		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000319562	ENST00000527132		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000319562	ENST00000396505		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000319562	ENST00000326932		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000319562	ENST00000525493		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
3UTR-intron	ENST00000319562	ENST00000450094		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000376581	ENST00000527132		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000376581	ENST00000396505		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000376581	ENST00000326932		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000376581	ENST00000525493		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000376581	ENST00000450094		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000593990	ENST00000527132		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000593990	ENST00000396505		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000593990	ENST00000326932		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000593990	ENST00000525493		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-intron	ENST00000593990	ENST00000450094		ChiTaRS3.1			BF223276	FARP1	chr13	99101624	-	DKK3	chr11	11986101	+
intron-3CDS	ENST00000299293	ENST00000368069		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000299293	ENST00000241704		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000549921	ENST00000368069		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000549921	ENST00000241704		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000550389	ENST00000368069		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000550389	ENST00000241704		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000397997	ENST00000368069		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000397997	ENST00000241704		ChiTaRS3.1			DA732632	FRS2	chr12	69874139	+	COPA	chr1	160267228	-
intron-3CDS	ENST00000358303	ENST00000325110		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000358303	ENST00000433297		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000360708	ENST00000325110		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000360708	ENST00000433297		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000311873	ENST00000325110		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000311873	ENST00000433297		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000481503	ENST00000325110		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-3CDS	ENST00000481503	ENST00000433297		ChiTaRS3.1			AK025736	ZC3HC1	chr7	129671759	-	HMGCS1	chr5	43294957	-
intron-intron	ENST00000311713	ENST00000283632		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000311713	ENST00000472843		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000278856	ENST00000283632		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000278856	ENST00000472843		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000529106	ENST00000283632		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000529106	ENST00000472843		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000525239	ENST00000283632		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000525239	ENST00000472843		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000525752	ENST00000283632		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000525752	ENST00000472843		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000540620	ENST00000283632		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-intron	ENST00000540620	ENST00000472843		ChiTaRS3.1			BJ996428	WDR74	chr11	62609096	-	RMND5A	chr2	87018037	-
intron-5UTR	ENST00000311713	ENST00000228284		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000311713	ENST00000431469		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000311713	ENST00000552221		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000311713	ENST00000546611		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000278856	ENST00000228284		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000278856	ENST00000431469		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000278856	ENST00000552221		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000278856	ENST00000546611		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000529106	ENST00000228284		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000529106	ENST00000431469		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000529106	ENST00000552221		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000529106	ENST00000546611		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000525239	ENST00000228284		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000525239	ENST00000431469		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000525239	ENST00000552221		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000525239	ENST00000546611		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000525752	ENST00000228284		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000525752	ENST00000431469		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000525752	ENST00000552221		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000525752	ENST00000546611		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000540620	ENST00000228284		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000540620	ENST00000431469		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000540620	ENST00000552221		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-5UTR	ENST00000540620	ENST00000546611		ChiTaRS3.1			DA352273	WDR74	chr11	62609096	-	SART3	chr12	108954948	-
intron-intron	ENST00000464527	ENST00000328913		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000473233		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000447025		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000414362		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000468976		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000328913		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000473233		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000447025		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000414362		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000468976		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000328913		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000473233		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000447025		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000414362		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000468976		ChiTaRS3.1			AI039637	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
5CDS-3UTR	ENST00000331825	ENST00000292205		ChiTaRS3.1			AA157368	FTL	chr19	49468804	+	ADAR	chr1	154556727	-
5CDS-3UTR	ENST00000331825	ENST00000368474		ChiTaRS3.1			AA157368	FTL	chr19	49468804	+	ADAR	chr1	154556727	-
5CDS-3UTR	ENST00000331825	ENST00000368471		ChiTaRS3.1			AA157368	FTL	chr19	49468804	+	ADAR	chr1	154556727	-
5CDS-intron	ENST00000331825	ENST00000471068		ChiTaRS3.1			AA157368	FTL	chr19	49468804	+	ADAR	chr1	154556727	-
intron-3UTR	ENST00000532636	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000532636	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000532636	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000532636	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000532636	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000533540	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000533540	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000533540	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000533540	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000533540	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000453788	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000453788	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000453788	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000453788	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000453788	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000534624	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000534624	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000534624	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000534624	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000534624	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000227378	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000227378	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000227378	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000227378	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000227378	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000534319	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000534319	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000534319	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000534319	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000534319	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000526110	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000526110	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000526110	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000526110	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000526110	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000526862	ENST00000300150		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000526862	ENST00000337979		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-3UTR	ENST00000526862	ENST00000535361		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000526862	ENST00000437946		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
intron-intron	ENST00000526862	ENST00000529177		ChiTaRS3.1			BQ362492	HSPA8	chr11	122930679	-	STX3	chr11	59569219	+
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			X98709	COL1A1	chr17	48275309	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			X98709	COL1A1	chr17	48275309	-	PDGFB	chr22	39631879	-
5CDS-5UTR	ENST00000412331	ENST00000544260		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000412331	ENST00000381869		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000412331	ENST00000381861		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000412331	ENST00000262102		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000412331	ENST00000519263		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000412331	ENST00000400046		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000412331	ENST00000297488		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000412331	ENST00000518713		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000412331	ENST00000381862		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000381683	ENST00000544260		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000381683	ENST00000381869		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000381683	ENST00000381861		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000381683	ENST00000262102		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000381683	ENST00000519263		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000381683	ENST00000400046		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000381683	ENST00000297488		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000381683	ENST00000518713		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000381683	ENST00000381862		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000406934	ENST00000544260		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000406934	ENST00000381869		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000406934	ENST00000381861		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000406934	ENST00000262102		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-5UTR	ENST00000406934	ENST00000519263		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000406934	ENST00000400046		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000406934	ENST00000297488		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000406934	ENST00000518713		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
5CDS-intron	ENST00000406934	ENST00000381862		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-5UTR	ENST00000476955	ENST00000544260		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-5UTR	ENST00000476955	ENST00000381869		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-5UTR	ENST00000476955	ENST00000381861		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-5UTR	ENST00000476955	ENST00000262102		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-5UTR	ENST00000476955	ENST00000519263		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-intron	ENST00000476955	ENST00000400046		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-intron	ENST00000476955	ENST00000297488		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-intron	ENST00000476955	ENST00000518713		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
3UTR-intron	ENST00000476955	ENST00000381862		ChiTaRS3.1			DA039338	EIF3L	chr22	38247497	+	MTUS1	chr8	17573414	-
Frame-shit	ENST00000344691	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000344691	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000344691	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000344691	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000344691	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000325074	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000325074	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000325074	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000325074	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000325074	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
In-frame	ENST00000437180	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
In-frame	ENST00000437180	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
In-frame	ENST00000437180	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
In-frame	ENST00000437180	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000437180	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000300305	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000300305	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000300305	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000300305	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000300305	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000399240	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000399240	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000399240	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000399240	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000399240	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000486278	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000486278	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000486278	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000486278	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000486278	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
intron-3CDS	ENST00000494829	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
intron-3CDS	ENST00000494829	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
intron-3CDS	ENST00000494829	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
intron-3CDS	ENST00000494829	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
intron-3UTR	ENST00000494829	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000358356	ENST00000351097		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000358356	ENST00000285679		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000358356	ENST00000285681		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
Frame-shit	ENST00000358356	ENST00000400183		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
5CDS-3UTR	ENST00000358356	ENST00000547201		ChiTaRS3.1			AF419247	RUNX1	chr21	36231771	-	USP25	chr21	17163821	+
intron-5UTR	ENST00000399332	ENST00000248089		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574151		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000396916		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000399332	ENST00000572355		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574980		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000354679		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000248089		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574151		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000396916		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000553700	ENST00000572355		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574980		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000354679		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000248089		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574151		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000396916		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000556474	ENST00000572355		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574980		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000354679		ChiTaRS3.1			BM840100	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-3CDS	ENST00000483933	ENST00000293760		ChiTaRS3.1			DA074613	FUT9	chr6	96562003	+	LEMD2	chr6	33754551	-
intron-5UTR	ENST00000483933	ENST00000508327		ChiTaRS3.1			DA074613	FUT9	chr6	96562003	+	LEMD2	chr6	33754551	-
intron-intron	ENST00000483933	ENST00000502643		ChiTaRS3.1			DA074613	FUT9	chr6	96562003	+	LEMD2	chr6	33754551	-
5UTR-3CDS	ENST00000302103	ENST00000293760		ChiTaRS3.1			DA074613	FUT9	chr6	96562003	+	LEMD2	chr6	33754551	-
5UTR-5UTR	ENST00000302103	ENST00000508327		ChiTaRS3.1			DA074613	FUT9	chr6	96562003	+	LEMD2	chr6	33754551	-
5UTR-intron	ENST00000302103	ENST00000502643		ChiTaRS3.1			DA074613	FUT9	chr6	96562003	+	LEMD2	chr6	33754551	-
intron-3UTR	ENST00000296218	ENST00000509101		ChiTaRS3.1			CD364755	DNALI1	chr1	38034608	+	CXCL1	chr4	74735222	-
intron-3UTR	ENST00000296218	ENST00000395761		ChiTaRS3.1			CD364755	DNALI1	chr1	38034608	+	CXCL1	chr4	74735222	-
intron-3UTR	ENST00000541606	ENST00000509101		ChiTaRS3.1			CD364755	DNALI1	chr1	38034608	+	CXCL1	chr4	74735222	-
intron-3UTR	ENST00000541606	ENST00000395761		ChiTaRS3.1			CD364755	DNALI1	chr1	38034608	+	CXCL1	chr4	74735222	-
intron-3UTR	ENST00000497858	ENST00000509101		ChiTaRS3.1			CD364755	DNALI1	chr1	38034608	+	CXCL1	chr4	74735222	-
intron-3UTR	ENST00000497858	ENST00000395761		ChiTaRS3.1			CD364755	DNALI1	chr1	38034608	+	CXCL1	chr4	74735222	-
5CDS-intron	ENST00000430725	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000430725	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000430725	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000430725	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000325438	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000325438	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000325438	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000325438	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000458164	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000458164	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000458164	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000458164	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000447393	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000447393	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000447393	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000447393	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000547217	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000547217	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000547217	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
5CDS-intron	ENST00000547217	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551743	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551743	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551743	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551743	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551801	ENST00000267079		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551801	ENST00000547488		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551801	ENST00000547035		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
intron-intron	ENST00000551801	ENST00000547151		ChiTaRS3.1			BE184465	PACS2	chr14	105843177	+	MAP3K12	chr12	53881922	-
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BQ684668	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BQ684668	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
5CDS-intron	ENST00000229239	ENST00000540235		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393930		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393931		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000310706		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000540235		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393930		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393931		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000310706		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000540235		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393930		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393931		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000310706		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000540235		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393930		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393931		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000310706		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000540235		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393930		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393931		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000310706		ChiTaRS3.1			BQ314754	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
intron-3CDS	ENST00000513000	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000509777	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000262992	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000308502	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000508116	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000507861	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000506217	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000508084	ENST00000544564		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000541571		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000535424		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000378799		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000538565		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000606369		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000329908		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000538850		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000378798		ChiTaRS3.1			DB020243	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000383710	ENST00000361355		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3UTR	ENST00000383710	ENST00000491397		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3CDS	ENST00000357948	ENST00000361355		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3UTR	ENST00000357948	ENST00000491397		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3CDS	ENST00000283269	ENST00000361355		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3UTR	ENST00000283269	ENST00000491397		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3CDS	ENST00000490353	ENST00000361355		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3UTR	ENST00000490353	ENST00000491397		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3CDS	ENST00000462768	ENST00000361355		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3UTR	ENST00000462768	ENST00000491397		ChiTaRS3.1			AW583683	CADPS	chr3	62578345	-	AMY2B	chr1	104122016	+
intron-3CDS	ENST00000296417	ENST00000339438		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000296417	ENST00000438362		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000296417	ENST00000358528		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000296417	ENST00000261443		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000296417	ENST00000530886		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000296417	ENST00000369530		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000296417	ENST00000483407		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000296417	ENST00000534699		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000529158	ENST00000339438		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000529158	ENST00000438362		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000529158	ENST00000358528		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000529158	ENST00000261443		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000529158	ENST00000530886		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000529158	ENST00000369530		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000529158	ENST00000483407		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-intron	ENST00000529158	ENST00000534699		ChiTaRS3.1			DA903661	H2AFZ	chr4	100870059	-	CSDE1	chr1	115282348	-
intron-3CDS	ENST00000373996	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000313400	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000361209	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000361477	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000288520	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000341734	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000358637	ENST00000354185		ChiTaRS3.1			CN278368	ASTN2	chr9	119461323	+	DDX21	chr10	70738619	+
intron-3CDS	ENST00000376062	ENST00000367627		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000376062	ENST00000352445		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000376062	ENST00000495145		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000376055	ENST00000367627		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000376055	ENST00000352445		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000376055	ENST00000495145		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000307677	ENST00000367627		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000307677	ENST00000352445		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000307677	ENST00000495145		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000420653	ENST00000367627		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000420653	ENST00000352445		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000420653	ENST00000495145		ChiTaRS3.1			BQ686301	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
3UTR-intron	ENST00000447654	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000447654	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-5UTR	ENST00000447654	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000401473	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-5UTR	ENST00000401473	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000311487	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-5UTR	ENST00000311487	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000347617	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-5UTR	ENST00000347617	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-intron	ENST00000395004	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
5CDS-5UTR	ENST00000395004	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000478214	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-5UTR	ENST00000478214	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000483972		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000429299		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000446745		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000457552		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000474599		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000376117		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000493025		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000444479		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000464122		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000456113		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000471690		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000383493		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000474845		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000420402		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000468184		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-intron	ENST00000374116	ENST00000421268		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
3UTR-5UTR	ENST00000374116	ENST00000486265		ChiTaRS3.1			AA287531	HMGA1	chr6	34213234	+	LTB	chr6	2879525	-
intron-intron	ENST00000509081	ENST00000361445		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000509081	ENST00000376838		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000509081	ENST00000495435		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000361445		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000376838		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000495435		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000361445		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000376838		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000495435		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000361445		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000376838		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000495435		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000361445		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000376838		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000495435		ChiTaRS3.1			BF845885	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000351698	ENST00000262033		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000537473		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000414274		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000436399		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000448157		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000456859		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000262033		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000537473		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000414274		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000436399		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000448157		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000456859		ChiTaRS3.1			BU634503	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-3CDS	ENST00000408667	ENST00000397752		ChiTaRS3.1			U19348	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-3CDS	ENST00000408667	ENST00000318493		ChiTaRS3.1			U19348	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-intron	ENST00000408667	ENST00000436117		ChiTaRS3.1			U19348	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-intron	ENST00000408667	ENST00000495962		ChiTaRS3.1			U19348	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-intron	ENST00000408667	ENST00000539704		ChiTaRS3.1			U19348	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
3UTR-3UTR	ENST00000446165	ENST00000312239		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-intron	ENST00000446165	ENST00000487117		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-intron	ENST00000446165	ENST00000375000		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-3UTR	ENST00000446165	ENST00000375003		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-3UTR	ENST00000343325	ENST00000312239		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-intron	ENST00000343325	ENST00000487117		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-intron	ENST00000343325	ENST00000375000		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
3UTR-3UTR	ENST00000343325	ENST00000375003		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000458122	ENST00000312239		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-intron	ENST00000458122	ENST00000487117		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-intron	ENST00000458122	ENST00000375000		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000458122	ENST00000375003		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000540038	ENST00000312239		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-intron	ENST00000540038	ENST00000487117		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-intron	ENST00000540038	ENST00000375000		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000540038	ENST00000375003		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000498389	ENST00000312239		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-intron	ENST00000498389	ENST00000487117		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-intron	ENST00000498389	ENST00000375000		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000498389	ENST00000375003		ChiTaRS3.1			BG620524	ZNF791	chr19	12740363	+	HP1BP3	chr1	21069937	-
intron-3UTR	ENST00000546111	ENST00000272638		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000546111	ENST00000490163		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000535923	ENST00000272638		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000535923	ENST00000490163		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000542912	ENST00000272638		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000542912	ENST00000490163		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000440277	ENST00000272638		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000440277	ENST00000490163		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000399433	ENST00000272638		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000399433	ENST00000490163		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000544134	ENST00000272638		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-3UTR	ENST00000544134	ENST00000490163		ChiTaRS3.1			AW273094	PHB2	chr12	7074570	+	UBXN4	chr2	136541877	-
intron-intron	ENST00000221431	ENST00000287912		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000221431	ENST00000401878		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000221431	ENST00000392759		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000221431	ENST00000486747		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000221431	ENST00000341148		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000594171	ENST00000287912		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000594171	ENST00000401878		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000594171	ENST00000392759		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000594171	ENST00000486747		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000594171	ENST00000341148		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000430193	ENST00000287912		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000430193	ENST00000401878		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000430193	ENST00000392759		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000430193	ENST00000486747		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000430193	ENST00000341148		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000598831	ENST00000287912		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000598831	ENST00000401878		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000598831	ENST00000392759		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000598831	ENST00000486747		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000598831	ENST00000341148		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000448145	ENST00000287912		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000448145	ENST00000401878		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000448145	ENST00000392759		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000448145	ENST00000486747		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000448145	ENST00000341148		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000600042	ENST00000287912		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000600042	ENST00000401878		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000600042	ENST00000392759		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-intron	ENST00000600042	ENST00000486747		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
intron-3UTR	ENST00000600042	ENST00000341148		ChiTaRS3.1			AI446790	SARS2	chr19	39423570	-	RBM33	chr7	155571078	-
3UTR-3CDS	ENST00000483099	ENST00000320152		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
3UTR-3CDS	ENST00000483099	ENST00000376378		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
3UTR-intron	ENST00000483099	ENST00000376376		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
In-frame	ENST00000414487	ENST00000320152		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
In-frame	ENST00000414487	ENST00000376378		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
5CDS-intron	ENST00000414487	ENST00000376376		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
In-frame	ENST00000367208	ENST00000320152		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
In-frame	ENST00000367208	ENST00000376378		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
5CDS-intron	ENST00000367208	ENST00000376376		ChiTaRS3.1			S60260	SNRPE	chr1	203832853	+	PRTFDC1	chr10	25160992	-
intron-3CDS	ENST00000371743	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000371743	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000450535	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000450535	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000441722	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000441722	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000417721	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000417721	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000458653	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000458653	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000326677	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000326677	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000428008	ENST00000373715		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000428008	ENST00000339436		ChiTaRS3.1			DA615333	ZFAS1	chr20	47897306	+	SRSF3	chr6	36562143	+
intron-3CDS	ENST00000395065	ENST00000543376		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000395065	ENST00000432566		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000395065	ENST00000360553		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000395065	ENST00000359187		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-intron	ENST00000395065	ENST00000565885		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425644	ENST00000543376		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425644	ENST00000432566		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425644	ENST00000360553		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425644	ENST00000359187		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-intron	ENST00000425644	ENST00000565885		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425463	ENST00000543376		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425463	ENST00000432566		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425463	ENST00000360553		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-3CDS	ENST00000425463	ENST00000359187		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-intron	ENST00000425463	ENST00000565885		ChiTaRS3.1			AK294826	NXF3	chrX	102332620	-	GOLGA8A	chr15	34674420	-
intron-5UTR	ENST00000393469	ENST00000246896		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000393469	ENST00000511674		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000423114	ENST00000246896		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000423114	ENST00000511674		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000469902	ENST00000246896		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000469902	ENST00000511674		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000314584	ENST00000246896		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000314584	ENST00000511674		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000430155	ENST00000246896		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000430155	ENST00000511674		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000465475	ENST00000246896		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000465475	ENST00000511674		ChiTaRS3.1			AK131070	SLC12A8	chr3	124802272	-	HTN1	chr4	70916155	+
intron-5UTR	ENST00000513610	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000513610	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000513610	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000513610	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-5UTR	ENST00000507288	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000507288	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000507288	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000507288	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-5UTR	ENST00000274203	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000274203	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000274203	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000274203	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-5UTR	ENST00000515803	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000515803	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000515803	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000515803	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-5UTR	ENST00000427430	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000427430	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000427430	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000427430	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-5UTR	ENST00000505695	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000505695	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000505695	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000505695	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-5UTR	ENST00000512061	ENST00000477049		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000512061	ENST00000224140		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000512061	ENST00000393220		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
intron-3UTR	ENST00000512061	ENST00000372169		ChiTaRS3.1			H83516	MYO10	chr5	16818142	-	SETX	chr9	135137588	-
3UTR-3CDS	ENST00000534336	ENST00000402363		ChiTaRS3.1			AI133392	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-3CDS	ENST00000534336	ENST00000537798		ChiTaRS3.1			AI133392	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-3CDS	ENST00000534336	ENST00000350030		ChiTaRS3.1			AI133392	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-intron	ENST00000534336	ENST00000372052		ChiTaRS3.1			AI133392	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-intron	ENST00000534336	ENST00000351223		ChiTaRS3.1			AI133392	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-intron	ENST00000534336	ENST00000530073		ChiTaRS3.1			AI133392	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
intron-3CDS	ENST00000261837	ENST00000369784		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000261837	ENST00000487146		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000261837	ENST00000602849		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000396335	ENST00000369784		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000396335	ENST00000487146		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000396335	ENST00000602849		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000358784	ENST00000369784		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000358784	ENST00000487146		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000358784	ENST00000602849		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000559348	ENST00000369784		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000559348	ENST00000487146		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000559348	ENST00000602849		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000560116	ENST00000369784		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000560116	ENST00000487146		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
intron-3CDS	ENST00000560116	ENST00000602849		ChiTaRS3.1			AI051816	GNB5	chr15	52413369	+	RBM15	chr1	110884514	-
5CDS-3UTR	ENST00000399975	ENST00000262746		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000399975	ENST00000319248		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000399975	ENST00000372079		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-intron	ENST00000399975	ENST00000483583		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000399976	ENST00000262746		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000399976	ENST00000319248		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000399976	ENST00000372079		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-intron	ENST00000399976	ENST00000483583		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000334352	ENST00000262746		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000334352	ENST00000319248		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000334352	ENST00000372079		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-intron	ENST00000334352	ENST00000483583		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
intron-3UTR	ENST00000535828	ENST00000262746		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
intron-3UTR	ENST00000535828	ENST00000319248		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
intron-3UTR	ENST00000535828	ENST00000372079		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
intron-intron	ENST00000535828	ENST00000483583		ChiTaRS3.1			AI084599	USP16	chr21	30414376	-	PRDX1	chr1	45976942	+
5CDS-3UTR	ENST00000360614	ENST00000337198		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000360614	ENST00000347770		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000360614	ENST00000522311		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-3UTR	ENST00000585374	ENST00000337198		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000585374	ENST00000347770		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000585374	ENST00000522311		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-3UTR	ENST00000593119	ENST00000337198		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000593119	ENST00000347770		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000593119	ENST00000522311		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-3UTR	ENST00000540670	ENST00000337198		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000540670	ENST00000347770		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000540670	ENST00000522311		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-3UTR	ENST00000590729	ENST00000337198		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590729	ENST00000347770		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590729	ENST00000522311		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-3UTR	ENST00000590511	ENST00000337198		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590511	ENST00000347770		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590511	ENST00000522311		ChiTaRS3.1			X76040	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-5UTR	ENST00000361156	ENST00000389757		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000361156	ENST00000389759		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000361156	ENST00000495123		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000347108	ENST00000389757		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000347108	ENST00000389759		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000347108	ENST00000495123		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000361396	ENST00000389757		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000361396	ENST00000389759		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000361396	ENST00000495123		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000376829	ENST00000389757		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000376829	ENST00000389759		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000376829	ENST00000495123		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-5UTR	ENST00000466027	ENST00000389757		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-5UTR	ENST00000466027	ENST00000389759		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-intron	ENST00000466027	ENST00000495123		ChiTaRS3.1			AK055823	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-3CDS	ENST00000319359	ENST00000328827		ChiTaRS3.1			BU852279	ELL3	chr15	44085945	+	PAWR	chr12	80083616	-
intron-5UTR	ENST00000319359	ENST00000547571		ChiTaRS3.1			BU852279	ELL3	chr15	44085945	+	PAWR	chr12	80083616	-
intron-3CDS	ENST00000497465	ENST00000328827		ChiTaRS3.1			BU852279	ELL3	chr15	44085945	+	PAWR	chr12	80083616	-
intron-5UTR	ENST00000497465	ENST00000547571		ChiTaRS3.1			BU852279	ELL3	chr15	44085945	+	PAWR	chr12	80083616	-
intron-3UTR	ENST00000357037	ENST00000273398		ChiTaRS3.1			BE392022	PTRF	chr17	40556132	-	ATP6V1A	chr3	113529148	+
intron-intron	ENST00000357037	ENST00000538620		ChiTaRS3.1			BE392022	PTRF	chr17	40556132	-	ATP6V1A	chr3	113529148	+
intron-intron	ENST00000357037	ENST00000461496		ChiTaRS3.1			BE392022	PTRF	chr17	40556132	-	ATP6V1A	chr3	113529148	+
intron-3CDS	ENST00000209873	ENST00000360639		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000209873	ENST00000394987		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000209873	ENST00000567617		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000394384	ENST00000360639		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000394384	ENST00000394987		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000394384	ENST00000567617		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000550286	ENST00000360639		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000550286	ENST00000394987		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000550286	ENST00000567617		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000549983	ENST00000360639		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000549983	ENST00000394987		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-3CDS	ENST00000549983	ENST00000567617		ChiTaRS3.1			AI755186	AAAS	chr12	53701314	+	C15orf39	chr15	75499204	-
intron-intron	ENST00000604938	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401010	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000339388	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000369323	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000605317	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000479926	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000604894	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401009	ENST00000369219		ChiTaRS3.1			BC099898	NBPF11	chr1	147930761	-	NBPF14	chr1	145004781	+
Frame-shit	ENST00000302907	ENST00000368884		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
Frame-shit	ENST00000302907	ENST00000368881		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
5CDS-intron	ENST00000302907	ENST00000469786		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
Frame-shit	ENST00000391752	ENST00000368884		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
Frame-shit	ENST00000391752	ENST00000368881		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
5CDS-intron	ENST00000391752	ENST00000469786		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-3CDS	ENST00000402367	ENST00000368884		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-3CDS	ENST00000402367	ENST00000368881		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-intron	ENST00000402367	ENST00000469786		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-3CDS	ENST00000391751	ENST00000368884		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-3CDS	ENST00000391751	ENST00000368881		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-intron	ENST00000391751	ENST00000469786		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
Frame-shit	ENST00000391753	ENST00000368884		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
Frame-shit	ENST00000391753	ENST00000368881		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
5CDS-intron	ENST00000391753	ENST00000469786		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-3CDS	ENST00000441429	ENST00000368884		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-3CDS	ENST00000441429	ENST00000368881		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
3UTR-intron	ENST00000441429	ENST00000469786		ChiTaRS3.1			BU590293	RPS9	chr19	54711372	+	PSMD4	chr1	151239761	+
5CDS-3UTR	ENST00000359546	ENST00000285208		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000359546	ENST00000543906		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000359546	ENST00000469959		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000359546	ENST00000486858		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-3UTR	ENST00000506642	ENST00000285208		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-3UTR	ENST00000506642	ENST00000543906		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-intron	ENST00000506642	ENST00000469959		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-intron	ENST00000506642	ENST00000486858		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000393745	ENST00000285208		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000393745	ENST00000543906		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000393745	ENST00000469959		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000393745	ENST00000486858		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000512824	ENST00000285208		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000512824	ENST00000543906		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000512824	ENST00000469959		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000512824	ENST00000486858		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000515094	ENST00000285208		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000515094	ENST00000543906		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000515094	ENST00000469959		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000515094	ENST00000486858		ChiTaRS3.1			AK057826	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000340513	ENST00000393784		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000519860		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000523291		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000326654		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-3UTR	ENST00000300403	ENST00000393784		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000519860		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000523291		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000326654		ChiTaRS3.1			BQ644408	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
3UTR-3UTR	ENST00000458031	ENST00000555427		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000458031	ENST00000555147		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000494103	ENST00000555427		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000494103	ENST00000555147		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000476854	ENST00000555427		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000476854	ENST00000555147		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000476351	ENST00000555427		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000476351	ENST00000555147		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000404366	ENST00000555427		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
3UTR-3UTR	ENST00000404366	ENST00000555147		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
intron-3UTR	ENST00000468068	ENST00000555427		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
intron-3UTR	ENST00000468068	ENST00000555147		ChiTaRS3.1			AI783613	ACY1	chr3	52023140	-	MC1R	chr16	89987308	-
intron-3CDS	ENST00000340170	ENST00000377869		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000340170	ENST00000220616		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000340170	ENST00000542445		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000340170	ENST00000519543		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-intron	ENST00000340170	ENST00000522523		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000263208	ENST00000377869		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000263208	ENST00000220616		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000263208	ENST00000542445		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000263208	ENST00000519543		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-intron	ENST00000263208	ENST00000522523		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000541063	ENST00000377869		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000541063	ENST00000220616		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000541063	ENST00000542445		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000541063	ENST00000519543		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-intron	ENST00000541063	ENST00000522523		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000546308	ENST00000377869		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000546308	ENST00000220616		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000546308	ENST00000542445		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000546308	ENST00000519543		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-intron	ENST00000546308	ENST00000522523		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000464189	ENST00000377869		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000464189	ENST00000220616		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000464189	ENST00000542445		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-3CDS	ENST00000464189	ENST00000519543		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
intron-intron	ENST00000464189	ENST00000522523		ChiTaRS3.1			BG992571	HIRA	chr22	19418334	-	TG	chr8	134144161	+
3UTR-3CDS	ENST00000374810	ENST00000394667		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374810	ENST00000502534		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374810	ENST00000394665		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374810	ENST00000506397		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374810	ENST00000394668		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374809	ENST00000394667		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374809	ENST00000502534		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374809	ENST00000394665		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374809	ENST00000506397		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
3UTR-3CDS	ENST00000374809	ENST00000394668		ChiTaRS3.1			BM810873	TP53INP2	chr20	33298208	+	RPL34	chr4	109543688	+
intron-3UTR	ENST00000355264	ENST00000455833		ChiTaRS3.1			BM714001	AP3M1	chr10	75883115	-	IFFO2	chr1	19230956	-
intron-3UTR	ENST00000372745	ENST00000455833		ChiTaRS3.1			BM714001	AP3M1	chr10	75883115	-	IFFO2	chr1	19230956	-
intron-3UTR	ENST00000487653	ENST00000455833		ChiTaRS3.1			BM714001	AP3M1	chr10	75883115	-	IFFO2	chr1	19230956	-
intron-intron	ENST00000013125	ENST00000338368		ChiTaRS3.1			AK022387	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000013125	ENST00000314191		ChiTaRS3.1			AK022387	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000013125	ENST00000523565		ChiTaRS3.1			AK022387	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000557578	ENST00000338368		ChiTaRS3.1			AK022387	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000557578	ENST00000314191		ChiTaRS3.1			AK022387	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000557578	ENST00000523565		ChiTaRS3.1			AK022387	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
3UTR-intron	ENST00000011653	ENST00000384994		ChiTaRS3.1			AI948884	CD4	chr12	6929884	-	NEAT1	chr11	65191435	-
intron-intron	ENST00000541982	ENST00000384994		ChiTaRS3.1			AI948884	CD4	chr12	6929884	-	NEAT1	chr11	65191435	-
intron-intron	ENST00000538827	ENST00000384994		ChiTaRS3.1			AI948884	CD4	chr12	6929884	-	NEAT1	chr11	65191435	-
intron-3CDS	ENST00000321895	ENST00000355666		ChiTaRS3.1			BU688294	CCDC71	chr3	49200054	+	TTC3	chr21	38538111	-
intron-3CDS	ENST00000321895	ENST00000399017		ChiTaRS3.1			BU688294	CCDC71	chr3	49200054	+	TTC3	chr21	38538111	-
intron-3CDS	ENST00000321895	ENST00000354749		ChiTaRS3.1			BU688294	CCDC71	chr3	49200054	+	TTC3	chr21	38538111	-
intron-3UTR	ENST00000321895	ENST00000479930		ChiTaRS3.1			BU688294	CCDC71	chr3	49200054	+	TTC3	chr21	38538111	-
intron-intron	ENST00000321895	ENST00000540756		ChiTaRS3.1			BU688294	CCDC71	chr3	49200054	+	TTC3	chr21	38538111	-
intron-intron	ENST00000321895	ENST00000399010		ChiTaRS3.1			BU688294	CCDC71	chr3	49200054	+	TTC3	chr21	38538111	-
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DC369874	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-intron	ENST00000335012	ENST00000374012		ChiTaRS3.1			AX746993	C3orf70	chr3	184799861	-	PHF20	chr20	34485505	-
intron-intron	ENST00000335012	ENST00000439301		ChiTaRS3.1			AX746993	C3orf70	chr3	184799861	-	PHF20	chr20	34485505	-
intron-intron	ENST00000335012	ENST00000481202		ChiTaRS3.1			AX746993	C3orf70	chr3	184799861	-	PHF20	chr20	34485505	-
intron-3CDS	ENST00000292782	ENST00000250237		ChiTaRS3.1			BE273347	DCUN1D1	chr3	182683466	-	QTRT1	chr19	10812792	+
intron-3UTR	ENST00000292782	ENST00000585885		ChiTaRS3.1			BE273347	DCUN1D1	chr3	182683466	-	QTRT1	chr19	10812792	+
intron-3CDS	ENST00000469954	ENST00000250237		ChiTaRS3.1			BE273347	DCUN1D1	chr3	182683466	-	QTRT1	chr19	10812792	+
intron-3UTR	ENST00000469954	ENST00000585885		ChiTaRS3.1			BE273347	DCUN1D1	chr3	182683466	-	QTRT1	chr19	10812792	+
5CDS-intron	ENST00000265462	ENST00000395876		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
5CDS-5UTR	ENST00000265462	ENST00000311597		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
5CDS-5UTR	ENST00000265462	ENST00000538737		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
5CDS-5UTR	ENST00000265462	ENST00000431262		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
5CDS-5UTR	ENST00000265462	ENST00000535444		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
5CDS-intron	ENST00000265462	ENST00000450140		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
5CDS-intron	ENST00000265462	ENST00000483836		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-intron	ENST00000352435	ENST00000395876		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000352435	ENST00000311597		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000352435	ENST00000538737		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000352435	ENST00000431262		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000352435	ENST00000535444		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-intron	ENST00000352435	ENST00000450140		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-intron	ENST00000352435	ENST00000483836		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-intron	ENST00000347941	ENST00000395876		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000347941	ENST00000311597		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000347941	ENST00000538737		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000347941	ENST00000431262		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-5UTR	ENST00000347941	ENST00000535444		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-intron	ENST00000347941	ENST00000450140		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-intron	ENST00000347941	ENST00000483836		ChiTaRS3.1			DA297249	PRDX5	chr11	64088235	+	MLC1	chr22	50523816	-
intron-3UTR	ENST00000317697	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000536549	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000537754	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000536953	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000539528	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000535055	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000536071	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000540782	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000535988	ENST00000374423		ChiTaRS3.1			CA420576	ASB8	chr12	48542498	+	ZDBF2	chr2	207177169	-
intron-3UTR	ENST00000465150	ENST00000562057		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000465150	ENST00000344051		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000465150	ENST00000431806		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000562057		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000344051		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000431806		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000562057		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000344051		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000431806		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000562057		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000344051		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000431806		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000562057		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000344051		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000431806		ChiTaRS3.1			BU676136	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3CDS	ENST00000393179	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000393179	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000313546	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000313546	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000549035	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000549035	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000541909	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000541909	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000549504	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000549504	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000378528	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000378528	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000546740	ENST00000223095		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-3CDS	ENST00000546740	ENST00000445463		ChiTaRS3.1			D58969	POC1B	chr12	89880665	-	SERPINE1	chr7	100777049	+
intron-5UTR	ENST00000285243	ENST00000358232		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000351393		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000442325		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000423854		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000350494		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000542824		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-intron	ENST00000285243	ENST00000542050		ChiTaRS3.1			AF332505	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-intron	ENST00000424085	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000257075	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000373747	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000426105	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000440538	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000373741	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000423018	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000373742	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
intron-intron	ENST00000490546	ENST00000390548		ChiTaRS3.1			BG058239	PUM1	chr1	31405779	-	IGHG1	chr22	23248781	+
In-frame	ENST00000367993	ENST00000302102		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000367993	ENST00000545399		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000367993	ENST00000543770		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000367993	ENST00000602133		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
5CDS-intron	ENST00000367993	ENST00000468774		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000392179	ENST00000302102		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000392179	ENST00000545399		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000392179	ENST00000543770		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000392179	ENST00000602133		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
5CDS-intron	ENST00000392179	ENST00000468774		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
intron-3CDS	ENST00000476409	ENST00000302102		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
intron-3CDS	ENST00000476409	ENST00000545399		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
intron-3CDS	ENST00000476409	ENST00000543770		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
intron-3CDS	ENST00000476409	ENST00000602133		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
intron-intron	ENST00000476409	ENST00000468774		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
3UTR-3CDS	ENST00000465923	ENST00000302102		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
3UTR-3CDS	ENST00000465923	ENST00000545399		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
3UTR-3CDS	ENST00000465923	ENST00000543770		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
3UTR-3CDS	ENST00000465923	ENST00000602133		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
3UTR-intron	ENST00000465923	ENST00000468774		ChiTaRS3.1			BQ339562	NDUFS2	chr1	161182190	+	ATP1A3	chr19	42482933	-
In-frame	ENST00000274137	ENST00000309859		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
5CDS-intron	ENST00000274137	ENST00000567468		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
5CDS-intron	ENST00000274137	ENST00000569182		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
In-frame	ENST00000469176	ENST00000309859		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
5CDS-intron	ENST00000469176	ENST00000567468		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
5CDS-intron	ENST00000469176	ENST00000569182		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
3UTR-3CDS	ENST00000510329	ENST00000309859		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
3UTR-intron	ENST00000510329	ENST00000567468		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
3UTR-intron	ENST00000510329	ENST00000569182		ChiTaRS3.1			DA942070	NDUFS6	chr5	1801609	+	GGA2	chr16	23497398	-
intron-3CDS	ENST00000254908	ENST00000216465		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000361389		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000554279		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000557639		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000349555		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000556627		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000557053		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000393734		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000553586		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-3CDS	ENST00000512783	ENST00000216465		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000361389		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000554279		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000557639		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000349555		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000556627		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000557053		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000393734		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000553586		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-3CDS	ENST00000510013	ENST00000216465		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000361389		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000554279		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000557639		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000349555		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000556627		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000557053		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000393734		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000553586		ChiTaRS3.1			BM833317	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
5CDS-intron	ENST00000231198	ENST00000494222		ChiTaRS3.1			BF668228	THG1L	chr5	157164961	+	PLEKHA1	chr10	124190917	+
5CDS-3UTR	ENST00000231198	ENST00000368990		ChiTaRS3.1			BF668228	THG1L	chr5	157164961	+	PLEKHA1	chr10	124190917	+
5CDS-3UTR	ENST00000231198	ENST00000368988		ChiTaRS3.1			BF668228	THG1L	chr5	157164961	+	PLEKHA1	chr10	124190917	+
5CDS-3UTR	ENST00000231198	ENST00000368989		ChiTaRS3.1			BF668228	THG1L	chr5	157164961	+	PLEKHA1	chr10	124190917	+
5CDS-intron	ENST00000231198	ENST00000538022		ChiTaRS3.1			BF668228	THG1L	chr5	157164961	+	PLEKHA1	chr10	124190917	+
5CDS-3UTR	ENST00000231198	ENST00000433307		ChiTaRS3.1			BF668228	THG1L	chr5	157164961	+	PLEKHA1	chr10	124190917	+
3UTR-3UTR	ENST00000534336	ENST00000373670		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
3UTR-intron	ENST00000534336	ENST00000357244		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
3UTR-intron	ENST00000534336	ENST00000423239		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
3UTR-intron	ENST00000534336	ENST00000373665		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
3UTR-intron	ENST00000534336	ENST00000335387		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
3UTR-intron	ENST00000534336	ENST00000478216		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
3UTR-intron	ENST00000534336	ENST00000471874		ChiTaRS3.1			CB985943	MALAT1	chr11	65270085	+	RC3H2	chr9	125607058	-
intron-3CDS	ENST00000332050	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000266269		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000405309		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000351933		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000215919		ChiTaRS3.1			AF254087	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3UTR	ENST00000599680	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000309877	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000600911	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000596822	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000601291	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000377139	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000597198	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000593922	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000600022	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000599223	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000596765	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000599144	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000598808	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000377135	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
intron-3UTR	ENST00000442265	ENST00000534336		ChiTaRS3.1			BF743346	IRF3	chr19	50168806	-	MALAT1	chr11	65271759	+
3UTR-3UTR	ENST00000311506	ENST00000263657		ChiTaRS3.1			AW152574	METTL2A	chr17	60526187	-	PNO1	chr2	68402512	-
intron-3CDS	ENST00000356309	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000356309	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000409423	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000409423	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000275830	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000275830	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000409339	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000409339	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000449727	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000449727	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000541468	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000541468	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000479022	ENST00000343470		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000479022	ENST00000452476		ChiTaRS3.1			CN337717	NCAPG2	chr7	158443577	-	LYAR	chr4	4281478	-
intron-3CDS	ENST00000323777	ENST00000533632		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
intron-3CDS	ENST00000323777	ENST00000528230		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
intron-intron	ENST00000323777	ENST00000525303		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
intron-intron	ENST00000323777	ENST00000434101		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
intron-intron	ENST00000323777	ENST00000359005		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
intron-intron	ENST00000323777	ENST00000533058		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
intron-intron	ENST00000323777	ENST00000526141		ChiTaRS3.1			AK097630	HSF5	chr17	56499148	-	TRAPPC4	chr11	118890877	+
In-frame	ENST00000246533	ENST00000287667		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000246533	ENST00000566883		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
Frame-shit	ENST00000589146	ENST00000287667		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000589146	ENST00000566883		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
In-frame	ENST00000587718	ENST00000287667		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000587718	ENST00000566883		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
In-frame	ENST00000590874	ENST00000287667		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000590874	ENST00000566883		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
In-frame	ENST00000588815	ENST00000287667		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000588815	ENST00000566883		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
In-frame	ENST00000588780	ENST00000287667		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000588780	ENST00000566883		ChiTaRS3.1			BQ961689	CAPNS1	chr19	36631950	+	NOMO1	chr16	14969080	+
5CDS-intron	ENST00000294428	ENST00000435064		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000411962		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000462432		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000540437		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000421495		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000419704		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000450926		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000294428	ENST00000545578		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000435064		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000411962		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000462432		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000540437		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000421495		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000419704		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000450926		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
5CDS-intron	ENST00000371072	ENST00000545578		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000435064		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000411962		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000462432		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000540437		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000421495		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000419704		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000450926		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-intron	ENST00000430964	ENST00000545578		ChiTaRS3.1			DB161995	RAVER2	chr1	65210871	+	CPSF3L	chr1	1334686	-
intron-3CDS	ENST00000334062	ENST00000253408		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000334062	ENST00000588735		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000334062	ENST00000435360		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000334062	ENST00000586793		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-5UTR	ENST00000334062	ENST00000591327		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-3CDS	ENST00000389544	ENST00000253408		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000389544	ENST00000588735		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000389544	ENST00000435360		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000389544	ENST00000586793		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-5UTR	ENST00000389544	ENST00000591327		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-3CDS	ENST00000542651	ENST00000253408		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000542651	ENST00000588735		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000542651	ENST00000435360		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000542651	ENST00000586793		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-5UTR	ENST00000542651	ENST00000591327		ChiTaRS3.1			BF923035	RASA3	chr13	114765079	-	GFAP	chr17	42990800	-
intron-intron	ENST00000054650	ENST00000454177		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3UTR	ENST00000054650	ENST00000429705		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3UTR	ENST00000054650	ENST00000296088		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000054650	ENST00000437827		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000054650	ENST00000462810		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000484676	ENST00000454177		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3UTR	ENST00000484676	ENST00000429705		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3UTR	ENST00000484676	ENST00000296088		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000484676	ENST00000437827		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000484676	ENST00000462810		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000307896	ENST00000454177		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3UTR	ENST00000307896	ENST00000429705		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3UTR	ENST00000307896	ENST00000296088		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000307896	ENST00000437827		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-intron	ENST00000307896	ENST00000462810		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
3UTR-intron	ENST00000377627	ENST00000454177		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
3UTR-3UTR	ENST00000377627	ENST00000429705		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
3UTR-3UTR	ENST00000377627	ENST00000296088		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
3UTR-intron	ENST00000377627	ENST00000437827		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
3UTR-intron	ENST00000377627	ENST00000462810		ChiTaRS3.1			DR978053	THAP3	chr1	6694416	+	SNRK	chr3	43392474	+
intron-3CDS	ENST00000327492	ENST00000358344		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000506339		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000355836		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000514633		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000515193		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000506259		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000504898		ChiTaRS3.1			AK297686	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
3UTR-3CDS	ENST00000262225	ENST00000451562		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
3UTR-3CDS	ENST00000262225	ENST00000468812		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
3UTR-3CDS	ENST00000262225	ENST00000489459		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
3UTR-3CDS	ENST00000262225	ENST00000355968		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
3UTR-intron	ENST00000262225	ENST00000480603		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
intron-3CDS	ENST00000509052	ENST00000451562		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
intron-3CDS	ENST00000509052	ENST00000468812		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
intron-3CDS	ENST00000509052	ENST00000489459		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
intron-3CDS	ENST00000509052	ENST00000355968		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
intron-intron	ENST00000509052	ENST00000480603		ChiTaRS3.1			BM752192	TMED2	chr12	124082124	+	PPIA	chr7	44836280	+
5UTR-3CDS	ENST00000368301	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-3CDS	ENST00000368301	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-5UTR	ENST00000368301	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-intron	ENST00000368301	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-intron	ENST00000368301	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000361308	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000361308	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000361308	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000361308	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000361308	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000347559	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000347559	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000347559	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000347559	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000347559	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368300	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368300	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000368300	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368300	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368300	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368299	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368299	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000368299	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368299	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368299	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000448611	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000448611	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000448611	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000448611	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000448611	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368297	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368297	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000368297	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368297	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368297	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000473598	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000473598	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000473598	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000473598	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000473598	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000392353	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000392353	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000392353	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000392353	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000392353	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000496738	ENST00000289104		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000496738	ENST00000423968		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000496738	ENST00000464896		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000496738	ENST00000461114		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000496738	ENST00000474559		ChiTaRS3.1			DA808693	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000377316	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377316	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000377316	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377321	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377321	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000377321	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377326	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377326	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000377326	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000312049	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000312049	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000312049	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000315422	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000315422	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000315422	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000443283	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000443283	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000443283	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000394374	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000394374	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000394374	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000337652	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000337652	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000337652	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000394376	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000394376	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000394376	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377313	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000377313	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000377313	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000478548	ENST00000274811		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-3CDS	ENST00000478548	ENST00000537487		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000478548	ENST00000509404		ChiTaRS3.1			CN362141	MEN1	chr11	64577582	-	RNF44	chr5	175957142	-
intron-intron	ENST00000578229	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000578229	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000578229	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000578229	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000578229	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000578229	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580454	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580454	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580454	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580454	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580454	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580454	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000579760	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000579760	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000579760	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000579760	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000579760	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000579760	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000339142	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000339142	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000339142	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000339142	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000339142	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000339142	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000311661	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000311661	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000311661	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000311661	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000311661	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000311661	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000354124	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000354124	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000354124	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000354124	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000354124	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000354124	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000392445	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000392445	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000392445	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000392445	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000392445	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
3UTR-intron	ENST00000392445	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000581774	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000581774	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000581774	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000581774	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000581774	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000581774	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000583904	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000583904	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000583904	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000583904	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000583904	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000583904	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580474	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580474	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580474	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580474	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580474	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000580474	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000582625	ENST00000497164		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000582625	ENST00000360134		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000582625	ENST00000485287		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000582625	ENST00000335504		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000582625	ENST00000431659		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
intron-intron	ENST00000582625	ENST00000486469		ChiTaRS3.1			CA432009	C1QTNF1	chr17	77045622	-	MAGED4B	chrX	51929160	-
5CDS-3UTR	ENST00000340513	ENST00000393784		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000519860		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000523291		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000326654		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-3UTR	ENST00000300403	ENST00000393784		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000519860		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000523291		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000326654		ChiTaRS3.1			BU184882	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5UTR-intron	ENST00000272542	ENST00000406452		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
5UTR-intron	ENST00000272542	ENST00000523911		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
5UTR-intron	ENST00000272542	ENST00000519966		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
5UTR-intron	ENST00000272542	ENST00000430676		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
5UTR-intron	ENST00000272542	ENST00000518772		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
intron-intron	ENST00000480984	ENST00000406452		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
intron-intron	ENST00000480984	ENST00000523911		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
intron-intron	ENST00000480984	ENST00000519966		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
intron-intron	ENST00000480984	ENST00000430676		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
intron-intron	ENST00000480984	ENST00000518772		ChiTaRS3.1			BX475654	SLC20A1	chr2	113403706	+	RMDN1	chr8	87507196	-
intron-intron	ENST00000520356	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520356	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520356	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520356	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520356	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520356	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520727	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520727	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520727	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520727	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520727	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520727	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000429442	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000429442	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000429442	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000429442	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000429442	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000429442	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000377838	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000377838	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000377838	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000377838	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000377838	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000377838	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520214	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520214	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520214	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520214	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520214	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000520214	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000523399	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000523399	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000523399	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000523399	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000523399	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000523399	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000517307	ENST00000339556		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000517307	ENST00000392622		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000517307	ENST00000392623		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000517307	ENST00000440685		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000517307	ENST00000368699		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
intron-intron	ENST00000517307	ENST00000491177		ChiTaRS3.1			BC025423	ZFAT	chr8	135490351	-	S100A13	chr1	153604392	+
5CDS-intron	ENST00000262960	ENST00000407690		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407431		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407148		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000405938		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000496523		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407690		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407431		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407148		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000405938		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000496523		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407690		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407431		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407148		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000405938		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000496523		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407690		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407431		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407148		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000405938		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000496523		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407690		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407431		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407148		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000405938		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000496523		ChiTaRS3.1			BF571294	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5UTR-intron	ENST00000264258	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000273854		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000432638		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000354839		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000511294		ChiTaRS3.1			AI110800	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5CDS-3UTR	ENST00000536002	ENST00000305233		ChiTaRS3.1			DB532705	RIMBP2	chr12	130919279	-	PWWP2B	chr10	134231188	+
5CDS-3UTR	ENST00000536002	ENST00000368609		ChiTaRS3.1			DB532705	RIMBP2	chr12	130919279	-	PWWP2B	chr10	134231188	+
5CDS-3UTR	ENST00000261655	ENST00000305233		ChiTaRS3.1			DB532705	RIMBP2	chr12	130919279	-	PWWP2B	chr10	134231188	+
5CDS-3UTR	ENST00000261655	ENST00000368609		ChiTaRS3.1			DB532705	RIMBP2	chr12	130919279	-	PWWP2B	chr10	134231188	+
5CDS-3UTR	ENST00000535703	ENST00000305233		ChiTaRS3.1			DB532705	RIMBP2	chr12	130919279	-	PWWP2B	chr10	134231188	+
5CDS-3UTR	ENST00000535703	ENST00000368609		ChiTaRS3.1			DB532705	RIMBP2	chr12	130919279	-	PWWP2B	chr10	134231188	+
Frame-shit	ENST00000324896	ENST00000322723		ChiTaRS3.1			AI884950	GTF2I	chr7	74103524	+	NCL	chr2	232320811	-
Frame-shit	ENST00000353920	ENST00000322723		ChiTaRS3.1			AI884950	GTF2I	chr7	74103524	+	NCL	chr2	232320811	-
Frame-shit	ENST00000346152	ENST00000322723		ChiTaRS3.1			AI884950	GTF2I	chr7	74103524	+	NCL	chr2	232320811	-
Frame-shit	ENST00000416070	ENST00000322723		ChiTaRS3.1			AI884950	GTF2I	chr7	74103524	+	NCL	chr2	232320811	-
Frame-shit	ENST00000443166	ENST00000322723		ChiTaRS3.1			AI884950	GTF2I	chr7	74103524	+	NCL	chr2	232320811	-
intron-3CDS	ENST00000438130	ENST00000322723		ChiTaRS3.1			AI884950	GTF2I	chr7	74103524	+	NCL	chr2	232320811	-
In-frame	ENST00000221214	ENST00000315677		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000581527		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000400147		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000400149		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000400155		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000400150		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000584874		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000534970		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000539435		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000581699		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000400145		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000221214	ENST00000515196		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
5CDS-intron	ENST00000221214	ENST00000478161		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000315677		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000581527		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000400147		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000400149		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000400155		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000400150		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000584874		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000534970		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000539435		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000581699		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000400145		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000457542	ENST00000515196		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
5CDS-intron	ENST00000457542	ENST00000478161		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000315677		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000581527		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000400147		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000400149		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000400155		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000400150		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000584874		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000534970		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000539435		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000581699		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000400145		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3CDS	ENST00000260357	ENST00000515196		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-intron	ENST00000260357	ENST00000478161		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000315677		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000581527		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000400147		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000400149		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000400155		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000400150		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000584874		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000534970		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000539435		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000581699		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000400145		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000456763	ENST00000515196		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
5CDS-intron	ENST00000456763	ENST00000478161		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000315677		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000581527		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000400147		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000400149		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000400155		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000400150		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000584874		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000534970		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000539435		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000581699		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000400145		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
In-frame	ENST00000514566	ENST00000515196		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
5CDS-intron	ENST00000514566	ENST00000478161		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000315677		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000581527		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000400147		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000400149		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000400155		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000400150		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000584874		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000534970		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000539435		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000581699		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000400145		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-3CDS	ENST00000507762	ENST00000515196		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
3UTR-intron	ENST00000507762	ENST00000478161		ChiTaRS3.1			DA318993	MAPKBP1	chr15	42092112	+	DLGAP1	chr18	3534614	-
intron-3UTR	ENST00000323963	ENST00000254108		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000323963	ENST00000380244		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000323963	ENST00000568685		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000323963	ENST00000474990		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000440191	ENST00000254108		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000440191	ENST00000380244		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000440191	ENST00000568685		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000440191	ENST00000474990		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000356531	ENST00000254108		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000356531	ENST00000380244		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000356531	ENST00000568685		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000356531	ENST00000474990		ChiTaRS3.1			BM773122	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
3UTR-intron	ENST00000474629	ENST00000396253		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
3UTR-intron	ENST00000474629	ENST00000349215		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
3UTR-intron	ENST00000474629	ENST00000438420		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
3UTR-intron	ENST00000474629	ENST00000537258		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
3UTR-intron	ENST00000474629	ENST00000352460		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
3UTR-intron	ENST00000474629	ENST00000531848		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-intron	ENST00000475640	ENST00000396253		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-intron	ENST00000475640	ENST00000349215		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-intron	ENST00000475640	ENST00000438420		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-intron	ENST00000475640	ENST00000537258		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-intron	ENST00000475640	ENST00000352460		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-intron	ENST00000475640	ENST00000531848		ChiTaRS3.1			CB047385	PARP14	chr3	122448315	+	HPS5	chr11	18319596	+
intron-3UTR	ENST00000424120	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000413206	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000503292	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000389652	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
3UTR-3UTR	ENST00000438599	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
3UTR-3UTR	ENST00000511544	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3UTR	ENST00000513811	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
5CDS-3UTR	ENST00000507954	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
5CDS-3UTR	ENST00000515124	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
3UTR-3UTR	ENST00000503658	ENST00000327470		ChiTaRS3.1			BG494289	CC2D2A	chr4	15482848	+	FANCF	chr11	22645292	-
intron-3CDS	ENST00000546136	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000546136	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000381381	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000381381	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000309359	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000309359	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000451604	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000451604	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000537393	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000537393	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000541536	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000541536	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000396007	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000396007	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000545921	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000545921	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000541847	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000541847	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000441133	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000441133	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000536850	ENST00000295754		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-3CDS	ENST00000536850	ENST00000359013		ChiTaRS3.1			D50682	SOX5	chr12	24332887	-	TGFBR2	chr3	30691827	+
intron-5UTR	ENST00000371746	ENST00000378600		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000378603		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000256996		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000378601		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378600		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378603		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000256996		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378601		ChiTaRS3.1			BE254006	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-3CDS	ENST00000228841	ENST00000597275		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000228841	ENST00000496529		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000228841	ENST00000376396		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000228841	ENST00000422185		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000228841	ENST00000603986		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000228841	ENST00000536628		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000548438	ENST00000597275		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000548438	ENST00000496529		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000548438	ENST00000376396		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000548438	ENST00000422185		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000548438	ENST00000603986		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
intron-3CDS	ENST00000548438	ENST00000536628		ChiTaRS3.1			AA905650	MYL2	chr12	111348711	+	CCDC120	chrX	48924988	-
In-frame	ENST00000321949	ENST00000524717		ChiTaRS3.1			AY040324	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
In-frame	ENST00000338797	ENST00000524717		ChiTaRS3.1			AY040324	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
intron-3CDS	ENST00000594658	ENST00000524717		ChiTaRS3.1			AY040324	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
intron-3CDS	ENST00000601916	ENST00000524717		ChiTaRS3.1			AY040324	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			BU944756	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000300289	ENST00000513610		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000300289	ENST00000507288		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000300289	ENST00000274203		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000300289	ENST00000515803		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000300289	ENST00000427430		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000300289	ENST00000505695		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000300289	ENST00000512061		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-3CDS	ENST00000469684	ENST00000513610		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000469684	ENST00000507288		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000469684	ENST00000274203		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000469684	ENST00000515803		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000469684	ENST00000427430		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000469684	ENST00000505695		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000469684	ENST00000512061		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
Frame-shit	ENST00000538521	ENST00000513610		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000538521	ENST00000507288		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000538521	ENST00000274203		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000538521	ENST00000515803		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000538521	ENST00000427430		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000538521	ENST00000505695		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
5CDS-intron	ENST00000538521	ENST00000512061		ChiTaRS3.1			BQ292313	PDIA3	chr15	44060746	+	MYO10	chr5	16703071	-
intron-intron	ENST00000360319	ENST00000545294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000360319	ENST00000538489		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000360319	ENST00000489294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000360319	ENST00000282169		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000422373	ENST00000545294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000422373	ENST00000538489		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000422373	ENST00000489294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000422373	ENST00000282169		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000369850	ENST00000545294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000369850	ENST00000538489		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000369850	ENST00000489294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000369850	ENST00000282169		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000369856	ENST00000545294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000369856	ENST00000538489		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000369856	ENST00000489294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000369856	ENST00000282169		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000344736	ENST00000545294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000344736	ENST00000538489		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000344736	ENST00000489294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000344736	ENST00000282169		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000498491	ENST00000545294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000498491	ENST00000538489		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-3UTR	ENST00000498491	ENST00000489294		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
intron-intron	ENST00000498491	ENST00000282169		ChiTaRS3.1			CN332843	FLNA	chrX	153588227	-	UHMK1	chr1	162499085	+
5UTR-3UTR	ENST00000462705	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000462705	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000462705	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000462705	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000462705	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000462705	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000393785	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000393785	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000393785	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000393785	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000393785	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000393785	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000481632	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000481632	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000481632	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000481632	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000481632	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000481632	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000471418	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000471418	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000471418	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000471418	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000471418	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000471418	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000357258	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000357258	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000357258	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000357258	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000357258	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000357258	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000464560	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000464560	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000464560	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000464560	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000464560	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000464560	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000488663	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000488663	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000488663	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000488663	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000488663	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000488663	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000474710	ENST00000313949		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000474710	ENST00000371098		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000474710	ENST00000371075		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000474710	ENST00000371100		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000371099		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000371102		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000474710	ENST00000464624		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000306120		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000371095		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000371085		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000354359		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000265620		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000306090		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-intron	ENST00000474710	ENST00000371081		ChiTaRS3.1			CA405937	ZBTB20	chr3	114693211	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000529631	ENST00000370113		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000529631	ENST00000370114		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000529631	ENST00000535414		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000529631	ENST00000480774		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000529191	ENST00000370113		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000529191	ENST00000370114		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000529191	ENST00000535414		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000529191	ENST00000480774		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000273550	ENST00000370113		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000273550	ENST00000370114		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000273550	ENST00000535414		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000273550	ENST00000480774		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000526640	ENST00000370113		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000526640	ENST00000370114		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000526640	ENST00000535414		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000526640	ENST00000480774		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000532601	ENST00000370113		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3UTR	ENST00000532601	ENST00000370114		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000532601	ENST00000535414		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-intron	ENST00000532601	ENST00000480774		ChiTaRS3.1			BG506265	FTH1	chr11	61735103	+	EXTL2	chr1	101338873	-
intron-3CDS	ENST00000261405	ENST00000421182		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000261405	ENST00000357867		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000261405	ENST00000323926		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000261405	ENST00000336916		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000261405	ENST00000354785		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000357009		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000346544		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000345488		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000359671		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000446046		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000443816		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000432072		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000261405	ENST00000356005		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-intron	ENST00000261405	ENST00000490833		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-intron	ENST00000261405	ENST00000426059		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000572068	ENST00000421182		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000572068	ENST00000357867		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000572068	ENST00000323926		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000572068	ENST00000336916		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000572068	ENST00000354785		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000357009		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000346544		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000345488		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000359671		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000446046		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000443816		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000432072		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000572068	ENST00000356005		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-intron	ENST00000572068	ENST00000490833		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-intron	ENST00000572068	ENST00000426059		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000545906	ENST00000421182		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000545906	ENST00000357867		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000545906	ENST00000323926		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000545906	ENST00000336916		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3CDS	ENST00000545906	ENST00000354785		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000357009		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000346544		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000345488		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000359671		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000446046		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000443816		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000432072		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-3UTR	ENST00000545906	ENST00000356005		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-intron	ENST00000545906	ENST00000490833		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
intron-intron	ENST00000545906	ENST00000426059		ChiTaRS3.1			AW955870	VWF	chr12	6076738	-	FN1	chr2	216229705	-
3UTR-3UTR	ENST00000355072	ENST00000357635		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
3UTR-intron	ENST00000355072	ENST00000563119		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
3UTR-3UTR	ENST00000355072	ENST00000565772		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
3UTR-intron	ENST00000355072	ENST00000563706		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
3UTR-intron	ENST00000355072	ENST00000457294		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
intron-3UTR	ENST00000513806	ENST00000357635		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
intron-intron	ENST00000513806	ENST00000563119		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
intron-3UTR	ENST00000513806	ENST00000565772		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
intron-intron	ENST00000513806	ENST00000563706		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
intron-intron	ENST00000513806	ENST00000457294		ChiTaRS3.1			BE831658	HTT	chr4	3243371	+	FAM219B	chr15	75194603	-
5CDS-intron	ENST00000260649	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000260649	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000409387	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000409387	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000410056	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000410056	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000409741	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000409741	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000409229	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
5CDS-intron	ENST00000409229	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
intron-intron	ENST00000409380	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
intron-intron	ENST00000409380	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
intron-intron	ENST00000409294	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
intron-intron	ENST00000409294	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
intron-intron	ENST00000409740	ENST00000375200		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
intron-intron	ENST00000409740	ENST00000342427		ChiTaRS3.1			BP270725	SLC3A1	chr2	44507885	+	ZNF341	chr20	32375318	+
Frame-shit	ENST00000254108	ENST00000330387		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
Frame-shit	ENST00000254108	ENST00000456390		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000254108	ENST00000452463		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000254108	ENST00000458726		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000254108	ENST00000468127		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
Frame-shit	ENST00000380244	ENST00000330387		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
Frame-shit	ENST00000380244	ENST00000456390		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000380244	ENST00000452463		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000380244	ENST00000458726		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000380244	ENST00000468127		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
Frame-shit	ENST00000568685	ENST00000330387		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
Frame-shit	ENST00000568685	ENST00000456390		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000568685	ENST00000452463		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000568685	ENST00000458726		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
5CDS-intron	ENST00000568685	ENST00000468127		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
intron-3CDS	ENST00000474990	ENST00000330387		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
intron-3CDS	ENST00000474990	ENST00000456390		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
intron-intron	ENST00000474990	ENST00000452463		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
intron-intron	ENST00000474990	ENST00000458726		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
intron-intron	ENST00000474990	ENST00000468127		ChiTaRS3.1			AJ549094	FUS	chr16	31196384	+	CREB3L2	chr7	137593099	-
intron-3UTR	ENST00000381395	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381395	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000381395	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381406	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381406	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000381406	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000416167	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000416167	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000416167	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000300632	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000300632	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000300632	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000434045	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000434045	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000434045	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381392	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381392	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000381392	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381389	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000381389	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000381389	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000418738	ENST00000393409		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-3UTR	ENST00000418738	ENST00000251772		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
intron-intron	ENST00000418738	ENST00000505278		ChiTaRS3.1			DA661640	IGF2	chr11	2156638	-	PLXNA1	chr3	126753958	+
Frame-shit	ENST00000557636	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000557636	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000557636	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000557636	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000557636	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000557636	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000286650	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000286650	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000286650	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000286650	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000286650	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000286650	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000298832	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000298832	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000298832	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000298832	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000298832	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000298832	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000556893	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000556893	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000556893	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000556893	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000556893	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000556893	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000554510	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000554510	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000554510	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000554510	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000554510	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
Frame-shit	ENST00000554510	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000556977	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000556977	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000556977	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000556977	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000556977	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000556977	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
3UTR-3CDS	ENST00000555422	ENST00000284878		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
3UTR-3CDS	ENST00000555422	ENST00000400166		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
3UTR-3CDS	ENST00000555422	ENST00000356275		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
3UTR-3CDS	ENST00000555422	ENST00000400165		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
3UTR-3CDS	ENST00000555422	ENST00000306618		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
3UTR-3CDS	ENST00000555422	ENST00000400169		ChiTaRS3.1			DB522390	TTLL5	chr14	76231116	+	CXADR	chr21	18937743	+
intron-3CDS	ENST00000447281	ENST00000344756		ChiTaRS3.1			CB124307	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000447281	ENST00000340368		ChiTaRS3.1			CB124307	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000447281	ENST00000342407		ChiTaRS3.1			CB124307	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000344756		ChiTaRS3.1			CB124307	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000340368		ChiTaRS3.1			CB124307	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000609896	ENST00000342407		ChiTaRS3.1			CB124307	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000372852	ENST00000354989		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000360031		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000376652		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000433259		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000485936		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000354989		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000360031		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000376652		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000433259		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000485936		ChiTaRS3.1			BE250167	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
3UTR-3CDS	ENST00000568609	ENST00000288561		ChiTaRS3.1			DB068068	PWRN1	chr15	24815275	+	UBN2	chr7	138921748	+
3UTR-3CDS	ENST00000568609	ENST00000473989		ChiTaRS3.1			DB068068	PWRN1	chr15	24815275	+	UBN2	chr7	138921748	+
intron-3CDS	ENST00000481781	ENST00000259456		ChiTaRS3.1			R29048	INS-IGF2	chr11	2153284	-	HEMGN	chr9	100692741	-
intron-3CDS	ENST00000397270	ENST00000259456		ChiTaRS3.1			R29048	INS-IGF2	chr11	2153284	-	HEMGN	chr9	100692741	-
Frame-shit	ENST00000335119	ENST00000441174		ChiTaRS3.1			BP326540	CCIN	chr9	36169854	+	TBRG1	chr11	124496367	+
5CDS-intron	ENST00000335119	ENST00000375005		ChiTaRS3.1			BP326540	CCIN	chr9	36169854	+	TBRG1	chr11	124496367	+
5CDS-intron	ENST00000335119	ENST00000438907		ChiTaRS3.1			BP326540	CCIN	chr9	36169854	+	TBRG1	chr11	124496367	+
intron-3CDS	ENST00000250498	ENST00000264335		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000250498	ENST00000571732		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000250498	ENST00000573026		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000250498	ENST00000575977		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000250498	ENST00000498643		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000489532	ENST00000264335		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000489532	ENST00000571732		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000489532	ENST00000573026		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000489532	ENST00000575977		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000489532	ENST00000498643		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000538631	ENST00000264335		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000538631	ENST00000571732		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000538631	ENST00000573026		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000538631	ENST00000575977		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000538631	ENST00000498643		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000543337	ENST00000264335		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-3CDS	ENST00000543337	ENST00000571732		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000543337	ENST00000573026		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000543337	ENST00000575977		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
intron-intron	ENST00000543337	ENST00000498643		ChiTaRS3.1			AI094624	DAD1	chr14	23044039	+	YWHAE	chr17	1265241	+
In-frame	ENST00000392069	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392069	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000344493	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000344493	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000350526	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000350526	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000336840	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000336840	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000392070	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392070	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000409551	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000409551	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-3CDS	ENST00000464706	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-5UTR	ENST00000464706	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000409828	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000409828	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000258387	ENST00000379561		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000258387	ENST00000473775		ChiTaRS3.1			U02368	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-intron	ENST00000371018	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371018	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355977	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355977	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000357692	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000357692	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401041	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401041	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371016	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371016	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371014	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371014	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000371012	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000371012	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401042	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401042	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355356	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355356	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000479067	ENST00000370982		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000479067	ENST00000494936		ChiTaRS3.1			DA736803	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
Frame-shit	ENST00000377811	ENST00000402363		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
Frame-shit	ENST00000377811	ENST00000537798		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
Frame-shit	ENST00000377811	ENST00000350030		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
5CDS-intron	ENST00000377811	ENST00000372052		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
5CDS-intron	ENST00000377811	ENST00000351223		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
5CDS-intron	ENST00000377811	ENST00000530073		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
Frame-shit	ENST00000276062	ENST00000402363		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
Frame-shit	ENST00000276062	ENST00000537798		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
Frame-shit	ENST00000276062	ENST00000350030		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
5CDS-intron	ENST00000276062	ENST00000372052		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
5CDS-intron	ENST00000276062	ENST00000351223		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
5CDS-intron	ENST00000276062	ENST00000530073		ChiTaRS3.1			CN266772	NDUFB11	chrX	47003872	-	NASP	chr1	46073408	+
intron-3CDS	ENST00000005558	ENST00000333926		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3UTR	ENST00000005558	ENST00000488388		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
3UTR-3CDS	ENST00000403825	ENST00000333926		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
3UTR-3UTR	ENST00000403825	ENST00000488388		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3CDS	ENST00000429071	ENST00000333926		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3UTR	ENST00000429071	ENST00000488388		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3CDS	ENST00000535603	ENST00000333926		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3UTR	ENST00000535603	ENST00000488388		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3CDS	ENST00000486688	ENST00000333926		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-3UTR	ENST00000486688	ENST00000488388		ChiTaRS3.1			ES315811	IFRD1	chr7	112115963	+	CISD1	chr10	60037055	+
intron-intron	ENST00000544021	ENST00000257622		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000544021	ENST00000446813		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-3UTR	ENST00000544021	ENST00000395270		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000544021	ENST00000358357		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000544021	ENST00000434423		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000266556	ENST00000257622		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000266556	ENST00000446813		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-3UTR	ENST00000266556	ENST00000395270		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000266556	ENST00000358357		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000266556	ENST00000434423		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000545700	ENST00000257622		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000545700	ENST00000446813		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-3UTR	ENST00000545700	ENST00000395270		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000545700	ENST00000358357		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
intron-intron	ENST00000545700	ENST00000434423		ChiTaRS3.1			BF528396	TAPBPL	chr12	6574056	-	POM121	chr7	72420735	-
5UTR-3CDS	ENST00000355957	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000355957	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000361770	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000361770	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000359617	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000359617	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000371141	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000371141	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000371132	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000371132	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000496003	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000496003	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000358029	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000358029	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000361830	ENST00000392827		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000361830	ENST00000391553		ChiTaRS3.1			BC090061	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
In-frame	ENST00000415083	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000415083	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000415083	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542420	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542743	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000539849	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000269137	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000545952	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000336777		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000337502		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-5UTR	ENST00000585241	ENST00000476392		ChiTaRS3.1			AB300357	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000568630	ENST00000282382		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
intron-3CDS	ENST00000568630	ENST00000333314		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000545763	ENST00000282382		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000545763	ENST00000333314		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000389936	ENST00000282382		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000389936	ENST00000333314		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000219905	ENST00000282382		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000219905	ENST00000333314		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000566586	ENST00000282382		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000566586	ENST00000333314		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000570161	ENST00000282382		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
Frame-shit	ENST00000570161	ENST00000333314		ChiTaRS3.1			AA249870	MGA	chr15	41961235	+	TMED7-TICAM2	chr5	114961407	-
intron-3CDS	ENST00000483612	ENST00000298892		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000483612	ENST00000395805		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000483612	ENST00000251071		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000483612	ENST00000308433		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000483612	ENST00000417045		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-intron	ENST00000483612	ENST00000538387		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3CDS	ENST00000292401	ENST00000298892		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000292401	ENST00000395805		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000292401	ENST00000251071		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000292401	ENST00000308433		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000292401	ENST00000417045		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-intron	ENST00000292401	ENST00000538387		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3CDS	ENST00000411734	ENST00000298892		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000411734	ENST00000395805		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000411734	ENST00000251071		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000411734	ENST00000308433		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-3UTR	ENST00000411734	ENST00000417045		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
intron-intron	ENST00000411734	ENST00000538387		ChiTaRS3.1			AX795404	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863309	-
In-frame	ENST00000534358	ENST00000503238		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000358350		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000537810		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000264319		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000507711		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000514783		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000507873		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000506685		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000503238		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000358350		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000537810		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000264319		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000507711		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000514783		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000507873		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000506685		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000503238		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000358350		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000537810		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000354520	ENST00000264319		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000507711		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000514783		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000354520	ENST00000507873		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000506685		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000503238		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000358350		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000537810		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-5UTR	ENST00000420751	ENST00000264319		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000507711		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000514783		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-5UTR	ENST00000420751	ENST00000507873		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000506685		ChiTaRS3.1			DQ299939	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
intron-intron	ENST00000412585	ENST00000412585		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-3UTR	ENST00000412585	ENST00000425848		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000412585	ENST00000450871		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000412585	ENST00000359635		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000412585	ENST00000435618		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000412585	ENST00000421349		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000425848	ENST00000412585		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-3UTR	ENST00000425848	ENST00000425848		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000425848	ENST00000450871		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000425848	ENST00000359635		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000425848	ENST00000435618		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000425848	ENST00000421349		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000450871	ENST00000412585		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-3UTR	ENST00000450871	ENST00000425848		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000450871	ENST00000450871		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000450871	ENST00000359635		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000450871	ENST00000435618		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000450871	ENST00000421349		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000359635	ENST00000412585		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-3UTR	ENST00000359635	ENST00000425848		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000359635	ENST00000450871		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000359635	ENST00000359635		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000359635	ENST00000435618		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000359635	ENST00000421349		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000435618	ENST00000412585		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-3UTR	ENST00000435618	ENST00000425848		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000435618	ENST00000450871		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000435618	ENST00000359635		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000435618	ENST00000435618		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000435618	ENST00000421349		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000421349	ENST00000412585		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-3UTR	ENST00000421349	ENST00000425848		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000421349	ENST00000450871		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000421349	ENST00000359635		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000421349	ENST00000435618		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000421349	ENST00000421349		ChiTaRS3.1			AA826150	HLA-B	chr6	2655604	+	HLA-B	chr6	2834623	-
intron-intron	ENST00000527729	ENST00000465198		ChiTaRS3.1			BC013135	CKLF-CMTM1	chr16	66600699	+	RHOQ	chr2	46770103	+
intron-5UTR	ENST00000527729	ENST00000238738		ChiTaRS3.1			BC013135	CKLF-CMTM1	chr16	66600699	+	RHOQ	chr2	46770103	+
intron-intron	ENST00000532838	ENST00000465198		ChiTaRS3.1			BC013135	CKLF-CMTM1	chr16	66600699	+	RHOQ	chr2	46770103	+
intron-5UTR	ENST00000532838	ENST00000238738		ChiTaRS3.1			BC013135	CKLF-CMTM1	chr16	66600699	+	RHOQ	chr2	46770103	+
intron-intron	ENST00000296674	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000296674	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000296674	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000296674	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510210	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510210	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510210	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510210	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000512493	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000512493	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000512493	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000512493	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510019	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510019	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510019	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000510019	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000507980	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000507980	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000507980	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000507980	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000503605	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000503605	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000503605	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000503605	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000511844	ENST00000410042		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000511844	ENST00000338148		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000511844	ENST00000409145		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-intron	ENST00000511844	ENST00000465432		ChiTaRS3.1			BQ222647	RPS23	chr5	81571879	-	MRPL30	chr2	99879071	+
intron-3UTR	ENST00000366610	ENST00000356978		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366610	ENST00000447653		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366610	ENST00000555132		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366610	ENST00000553542		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366610	ENST00000544280		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-3UTR	ENST00000366609	ENST00000356978		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366609	ENST00000447653		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366609	ENST00000555132		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366609	ENST00000553542		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000366609	ENST00000544280		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-3UTR	ENST00000491430	ENST00000356978		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000491430	ENST00000447653		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000491430	ENST00000555132		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000491430	ENST00000553542		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
intron-intron	ENST00000491430	ENST00000544280		ChiTaRS3.1			BE765928	IRF2BP2	chr1	234741708	-	CALM1	chr14	90873556	+
5CDS-intron	ENST00000319550	ENST00000369250		ChiTaRS3.1			AA467897	NT5DC1	chr6	116427435	-	FAM160B1	chr10	116621298	-
5CDS-intron	ENST00000319550	ENST00000369248		ChiTaRS3.1			AA467897	NT5DC1	chr6	116427435	-	FAM160B1	chr10	116621298	-
5CDS-intron	ENST00000319550	ENST00000369246		ChiTaRS3.1			AA467897	NT5DC1	chr6	116427435	-	FAM160B1	chr10	116621298	-
Frame-shit	ENST00000589123	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000589123	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000346156	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000346156	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000395111	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000395111	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000586919	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000586919	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000341919	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000341919	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000590282	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000590282	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000443272	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
Frame-shit	ENST00000443272	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
intron-3CDS	ENST00000588839	ENST00000332853		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
intron-3CDS	ENST00000588839	ENST00000298454		ChiTaRS3.1			AI291551	NFIC	chr19	3452553	-	VSTM4	chr10	50315817	+
3UTR-3UTR	ENST00000354828	ENST00000524381		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-intron	ENST00000354828	ENST00000529038		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-3UTR	ENST00000354828	ENST00000331898		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-intron	ENST00000354828	ENST00000374778		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-intron	ENST00000354828	ENST00000541867		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-3UTR	ENST00000400075	ENST00000524381		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-intron	ENST00000400075	ENST00000529038		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-3UTR	ENST00000400075	ENST00000331898		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-intron	ENST00000400075	ENST00000374778		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
3UTR-intron	ENST00000400075	ENST00000541867		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
intron-3UTR	ENST00000487266	ENST00000524381		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
intron-intron	ENST00000487266	ENST00000529038		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
intron-3UTR	ENST00000487266	ENST00000331898		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
intron-intron	ENST00000487266	ENST00000374778		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
intron-intron	ENST00000487266	ENST00000541867		ChiTaRS3.1			DA569674	GABPA	chr21	27143516	+	OPCML	chr11	132286189	-
Frame-shit	ENST00000377815	ENST00000358901		ChiTaRS3.1			CN311554	BORA	chr13	73303232	+	VCP	chr9	35064282	-
In-frame	ENST00000390667	ENST00000358901		ChiTaRS3.1			CN311554	BORA	chr13	73303232	+	VCP	chr9	35064282	-
3UTR-3CDS	ENST00000464754	ENST00000358901		ChiTaRS3.1			CN311554	BORA	chr13	73303232	+	VCP	chr9	35064282	-
Frame-shit	ENST00000261891	ENST00000178640		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000560591		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000395476		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000354498		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000340972		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000457488	ENST00000178640		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000560591		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000395476		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000354498		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000340972		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000558069	ENST00000178640		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000560591		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000395476		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000354498		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000340972		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-3CDS	ENST00000558482	ENST00000178640		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000560591		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000395476		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000354498		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000340972		ChiTaRS3.1			AI692764	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
intron-3CDS	ENST00000296449	ENST00000343110		ChiTaRS3.1			BU727928	CCDC36	chr3	49282867	-	PRELP	chr1	203452459	-
intron-3CDS	ENST00000438782	ENST00000343110		ChiTaRS3.1			BU727928	CCDC36	chr3	49282867	-	PRELP	chr1	203452459	-
intron-3CDS	ENST00000452691	ENST00000343110		ChiTaRS3.1			BU727928	CCDC36	chr3	49282867	-	PRELP	chr1	203452459	-
3UTR-3CDS	ENST00000366429	ENST00000343110		ChiTaRS3.1			BU727928	CCDC36	chr3	49282867	-	PRELP	chr1	203452459	-
3UTR-3CDS	ENST00000451634	ENST00000343110		ChiTaRS3.1			BU727928	CCDC36	chr3	49282867	-	PRELP	chr1	203452459	-
intron-3CDS	ENST00000493870	ENST00000343110		ChiTaRS3.1			BU727928	CCDC36	chr3	49282867	-	PRELP	chr1	203452459	-
intron-3CDS	ENST00000527438	ENST00000246802		ChiTaRS3.1			AJ571972	DGAT1	chr8	145540164	-	GLTSCR2	chr19	48259043	+
intron-intron	ENST00000527438	ENST00000598681		ChiTaRS3.1			AJ571972	DGAT1	chr8	145540164	-	GLTSCR2	chr19	48259043	+
intron-3CDS	ENST00000332324	ENST00000246802		ChiTaRS3.1			AJ571972	DGAT1	chr8	145540164	-	GLTSCR2	chr19	48259043	+
intron-intron	ENST00000332324	ENST00000598681		ChiTaRS3.1			AJ571972	DGAT1	chr8	145540164	-	GLTSCR2	chr19	48259043	+
intron-3CDS	ENST00000531896	ENST00000246802		ChiTaRS3.1			AJ571972	DGAT1	chr8	145540164	-	GLTSCR2	chr19	48259043	+
intron-intron	ENST00000531896	ENST00000598681		ChiTaRS3.1			AJ571972	DGAT1	chr8	145540164	-	GLTSCR2	chr19	48259043	+
intron-3CDS	ENST00000382247	ENST00000337225		ChiTaRS3.1			CB217635	DCAF16	chr4	17803054	-	CXCL14	chr5	134914166	-
intron-3CDS	ENST00000382247	ENST00000512158		ChiTaRS3.1			CB217635	DCAF16	chr4	17803054	-	CXCL14	chr5	134914166	-
intron-3CDS	ENST00000536863	ENST00000337225		ChiTaRS3.1			CB217635	DCAF16	chr4	17803054	-	CXCL14	chr5	134914166	-
intron-3CDS	ENST00000536863	ENST00000512158		ChiTaRS3.1			CB217635	DCAF16	chr4	17803054	-	CXCL14	chr5	134914166	-
intron-3CDS	ENST00000507768	ENST00000337225		ChiTaRS3.1			CB217635	DCAF16	chr4	17803054	-	CXCL14	chr5	134914166	-
intron-3CDS	ENST00000507768	ENST00000512158		ChiTaRS3.1			CB217635	DCAF16	chr4	17803054	-	CXCL14	chr5	134914166	-
Frame-shit	ENST00000253108	ENST00000333213		ChiTaRS3.1			BU844738	EIF3G	chr19	10229344	-	TSEN54	chr17	73519354	+
5CDS-intron	ENST00000253108	ENST00000580013		ChiTaRS3.1			BU844738	EIF3G	chr19	10229344	-	TSEN54	chr17	73519354	+
intron-3CDS	ENST00000587168	ENST00000333213		ChiTaRS3.1			BU844738	EIF3G	chr19	10229344	-	TSEN54	chr17	73519354	+
intron-intron	ENST00000587168	ENST00000580013		ChiTaRS3.1			BU844738	EIF3G	chr19	10229344	-	TSEN54	chr17	73519354	+
intron-intron	ENST00000450976	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
intron-intron	ENST00000418281	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
3UTR-intron	ENST00000340957	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
intron-intron	ENST00000383847	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
intron-intron	ENST00000497070	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
intron-intron	ENST00000453072	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
3UTR-intron	ENST00000310585	ENST00000390237		ChiTaRS3.1			BP417346	FAM131A	chr3	184063125	+	IGKC	chr2	89158433	-
5CDS-intron	ENST00000217233	ENST00000397338		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000217233	ENST00000282512		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000217233	ENST00000381937		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000217233	ENST00000511613		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000217233	ENST00000506945		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000217233	ENST00000514504		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
intron-intron	ENST00000485293	ENST00000397338		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
intron-intron	ENST00000485293	ENST00000282512		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
intron-intron	ENST00000485293	ENST00000381937		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
intron-intron	ENST00000485293	ENST00000511613		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
intron-intron	ENST00000485293	ENST00000506945		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
intron-intron	ENST00000485293	ENST00000514504		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000422053	ENST00000397338		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000422053	ENST00000282512		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000422053	ENST00000381937		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000422053	ENST00000511613		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000422053	ENST00000506945		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-intron	ENST00000422053	ENST00000514504		ChiTaRS3.1			BP240144	TRIB3	chr20	368874	+	NADK2	chr5	36241697	-
5CDS-3UTR	ENST00000306726	ENST00000368865		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000538238		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368859		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368858		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000481952		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000564970	ENST00000368865		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000538238		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368859		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368858		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000481952		ChiTaRS3.1			BG198840	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000423431	ENST00000431635		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
intron-intron	ENST00000423431	ENST00000236051		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
intron-intron	ENST00000423431	ENST00000472982		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
5CDS-intron	ENST00000233025	ENST00000431635		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
5CDS-intron	ENST00000233025	ENST00000236051		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
5CDS-intron	ENST00000233025	ENST00000472982		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
5CDS-intron	ENST00000602728	ENST00000431635		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
5CDS-intron	ENST00000602728	ENST00000236051		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
5CDS-intron	ENST00000602728	ENST00000472982		ChiTaRS3.1			BQ680964	SPCS1	chr3	52742184	+	EBNA1BP2	chr1	43676600	+
intron-intron	ENST00000444761	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000444761	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000444761	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000444761	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000444761	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409105	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409105	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409105	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409105	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409105	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409913	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409913	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409913	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409913	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409913	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000319466	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000319466	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000319466	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000319466	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000319466	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409800	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409800	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409800	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409800	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409800	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000493804	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000493804	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000493804	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000493804	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000493804	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409207	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409207	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409207	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409207	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409207	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409973	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409973	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409973	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409973	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409973	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409147	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409147	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409147	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409147	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409147	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409218	ENST00000598095		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409218	ENST00000426897		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-3UTR	ENST00000409218	ENST00000323906		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409218	ENST00000535669		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
intron-intron	ENST00000409218	ENST00000596426		ChiTaRS3.1			BC047709	MCFD2	chr2	47277164	+	CD37	chr19	49843645	+
3UTR-3CDS	ENST00000545225	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000545225	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-intron	ENST00000545225	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-3CDS	ENST00000590720	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-3CDS	ENST00000590720	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-intron	ENST00000590720	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000541124	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000541124	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-intron	ENST00000541124	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-3CDS	ENST00000592578	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-3CDS	ENST00000592578	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-intron	ENST00000592578	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000441946	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000441946	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-intron	ENST00000441946	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000293362	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-3CDS	ENST00000293362	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
3UTR-intron	ENST00000293362	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-3CDS	ENST00000592169	ENST00000325327		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-3CDS	ENST00000592169	ENST00000582871		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-intron	ENST00000592169	ENST00000475819		ChiTaRS3.1			BU527777	PSME3	chr17	40994289	+	LMNB2	chr19	2430909	-
intron-intron	ENST00000545339	ENST00000409068		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000545339	ENST00000409085		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000545339	ENST00000406297		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000545339	ENST00000470281		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000399492	ENST00000409068		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000399492	ENST00000409085		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000399492	ENST00000406297		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-intron	ENST00000399492	ENST00000470281		ChiTaRS3.1			AI769230	CD27-AS1	chr12	6548635	+	AAK1	chr2	69691051	+
intron-3CDS	ENST00000339556	ENST00000280969		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000339556	ENST00000321757		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000339556	ENST00000518095		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-intron	ENST00000339556	ENST00000521838		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000392622	ENST00000280969		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000392622	ENST00000321757		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000392622	ENST00000518095		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-intron	ENST00000392622	ENST00000521838		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000392623	ENST00000280969		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000392623	ENST00000321757		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000392623	ENST00000518095		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-intron	ENST00000392623	ENST00000521838		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000440685	ENST00000280969		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000440685	ENST00000321757		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000440685	ENST00000518095		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-intron	ENST00000440685	ENST00000521838		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000368699	ENST00000280969		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000368699	ENST00000321757		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000368699	ENST00000518095		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-intron	ENST00000368699	ENST00000521838		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000491177	ENST00000280969		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000491177	ENST00000321757		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-3CDS	ENST00000491177	ENST00000518095		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-intron	ENST00000491177	ENST00000521838		ChiTaRS3.1			BP259408	S100A13	chr1	153604262	+	MAT2B	chr5	162939116	+
intron-5UTR	ENST00000333055	ENST00000368073		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000333055	ENST00000326837		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000333055	ENST00000368074		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000333055	ENST00000608310		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000333055	ENST00000556710		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000333055	ENST00000610139		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000333055	ENST00000475733		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000307826	ENST00000368073		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000307826	ENST00000326837		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000307826	ENST00000368074		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000307826	ENST00000608310		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000307826	ENST00000556710		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000307826	ENST00000610139		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000307826	ENST00000475733		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000446023	ENST00000368073		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000446023	ENST00000326837		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000446023	ENST00000368074		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000446023	ENST00000608310		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000446023	ENST00000556710		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000446023	ENST00000610139		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000446023	ENST00000475733		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000393340	ENST00000368073		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000393340	ENST00000326837		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000393340	ENST00000368074		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000393340	ENST00000608310		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000393340	ENST00000556710		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000393340	ENST00000610139		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000393340	ENST00000475733		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000427865	ENST00000368073		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000427865	ENST00000326837		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000427865	ENST00000368074		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000427865	ENST00000608310		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000427865	ENST00000556710		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-5UTR	ENST00000427865	ENST00000610139		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
intron-intron	ENST00000427865	ENST00000475733		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-5UTR	ENST00000506708	ENST00000368073		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-intron	ENST00000506708	ENST00000326837		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-intron	ENST00000506708	ENST00000368074		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-intron	ENST00000506708	ENST00000608310		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-intron	ENST00000506708	ENST00000556710		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-5UTR	ENST00000506708	ENST00000610139		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-intron	ENST00000506708	ENST00000475733		ChiTaRS3.1			DA351137	MGAT1	chr5	180235839	-	DCAF8	chr1	160231942	-
5CDS-intron	ENST00000305513	ENST00000340011		ChiTaRS3.1			DA355534	SMYD4	chr17	1731155	-	SPAM1	chr7	123668624	+
5CDS-intron	ENST00000305513	ENST00000402183		ChiTaRS3.1			DA355534	SMYD4	chr17	1731155	-	SPAM1	chr7	123668624	+
5CDS-intron	ENST00000305513	ENST00000460182		ChiTaRS3.1			DA355534	SMYD4	chr17	1731155	-	SPAM1	chr7	123668624	+
5CDS-intron	ENST00000305513	ENST00000439500		ChiTaRS3.1			DA355534	SMYD4	chr17	1731155	-	SPAM1	chr7	123668624	+
5CDS-intron	ENST00000305513	ENST00000223028		ChiTaRS3.1			DA355534	SMYD4	chr17	1731155	-	SPAM1	chr7	123668624	+
5CDS-intron	ENST00000416947	ENST00000361383		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000416947	ENST00000405275		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000416947	ENST00000373473		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000416947	ENST00000473857		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000416947	ENST00000373469		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
intron-intron	ENST00000493503	ENST00000361383		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
intron-intron	ENST00000493503	ENST00000405275		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
intron-intron	ENST00000493503	ENST00000373473		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
intron-intron	ENST00000493503	ENST00000473857		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
intron-intron	ENST00000493503	ENST00000373469		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000270139	ENST00000361383		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000270139	ENST00000405275		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000270139	ENST00000373473		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000270139	ENST00000473857		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000270139	ENST00000373469		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000442357	ENST00000361383		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000442357	ENST00000405275		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000442357	ENST00000373473		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000442357	ENST00000473857		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
5CDS-intron	ENST00000442357	ENST00000373469		ChiTaRS3.1			BQ946630	IFNAR1	chr21	34727789	+	CTNNBL1	chr20	36326491	-
3UTR-3UTR	ENST00000268171	ENST00000262428		ChiTaRS3.1			BE812237	FURIN	chr15	91425809	+	COTL1	chr16	84600430	-
3UTR-5UTR	ENST00000268171	ENST00000567278		ChiTaRS3.1			BE812237	FURIN	chr15	91425809	+	COTL1	chr16	84600430	-
3UTR-3UTR	ENST00000268171	ENST00000564057		ChiTaRS3.1			BE812237	FURIN	chr15	91425809	+	COTL1	chr16	84600430	-
5CDS-5UTR	ENST00000356761	ENST00000379705		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000379681		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000338947		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000356761	ENST00000379679		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000426868		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000379673		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000355779		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000358477		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000356761	ENST00000447043		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000356761	ENST00000494529		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000379705		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000379681		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000338947		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000299397	ENST00000379679		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000426868		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000379673		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000355779		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000358477		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000299397	ENST00000447043		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000299397	ENST00000494529		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000379705		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000379681		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000338947		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000342245	ENST00000379679		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000426868		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000379673		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000355779		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000358477		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000342245	ENST00000447043		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000342245	ENST00000494529		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000379705		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000379681		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000338947		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-intron	ENST00000533196	ENST00000379679		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000426868		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000379673		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000355779		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000358477		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-5UTR	ENST00000533196	ENST00000447043		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-intron	ENST00000533196	ENST00000494529		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000379705		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000379681		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000338947		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000527275	ENST00000379679		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000426868		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000379673		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000355779		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000358477		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-5UTR	ENST00000527275	ENST00000447043		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
5CDS-intron	ENST00000527275	ENST00000494529		ChiTaRS3.1			BP375800	SMPD1	chr11	6412128	+	TRPC4	chr13	38443784	-
intron-3CDS	ENST00000373233	ENST00000407690		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373233	ENST00000407431		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373233	ENST00000407148		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373233	ENST00000405938		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-intron	ENST00000373233	ENST00000496523		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000309279	ENST00000407690		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000309279	ENST00000407431		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000309279	ENST00000407148		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000309279	ENST00000405938		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-intron	ENST00000309279	ENST00000496523		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373222	ENST00000407690		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373222	ENST00000407431		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373222	ENST00000407148		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000373222	ENST00000405938		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-intron	ENST00000373222	ENST00000496523		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000480022	ENST00000407690		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000480022	ENST00000407431		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000480022	ENST00000407148		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-3CDS	ENST00000480022	ENST00000405938		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-intron	ENST00000480022	ENST00000496523		ChiTaRS3.1			BF932481	CHD6	chr20	40080504	-	TFIP11	chr22	26906092	-
intron-intron	ENST00000490577	ENST00000554438		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000490577	ENST00000245448		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000490577	ENST00000426751		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000490577	ENST00000311459		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000490577	ENST00000358473		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000378180	ENST00000554438		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000378180	ENST00000245448		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000378180	ENST00000426751		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000378180	ENST00000311459		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
intron-intron	ENST00000378180	ENST00000358473		ChiTaRS3.1			X66358	DLEU1	chr13	51203382	+	ATP5S	chr14	50862617	-
5CDS-intron	ENST00000037869	ENST00000357681		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000037869	ENST00000391954		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000037869	ENST00000367218		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000037869	ENST00000367219		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000037869	ENST00000341360		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000037869	ENST00000466407		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
3UTR-intron	ENST00000450256	ENST00000357681		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
3UTR-intron	ENST00000450256	ENST00000391954		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
3UTR-intron	ENST00000450256	ENST00000367218		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
3UTR-intron	ENST00000450256	ENST00000367219		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
3UTR-intron	ENST00000450256	ENST00000341360		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
3UTR-intron	ENST00000450256	ENST00000466407		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000430566	ENST00000357681		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000430566	ENST00000391954		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000430566	ENST00000367218		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000430566	ENST00000367219		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000430566	ENST00000341360		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000430566	ENST00000466407		ChiTaRS3.1			DA212125	FAM136A	chr2	70527972	-	ATP2B4	chr1	203702348	+
5CDS-intron	ENST00000271732	ENST00000336199		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-5UTR	ENST00000271732	ENST00000366540		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-5UTR	ENST00000271732	ENST00000366539		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-intron	ENST00000271732	ENST00000263826		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-intron	ENST00000271732	ENST00000492957		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-intron	ENST00000540514	ENST00000336199		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-5UTR	ENST00000540514	ENST00000366540		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-5UTR	ENST00000540514	ENST00000366539		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-intron	ENST00000540514	ENST00000263826		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
5CDS-intron	ENST00000540514	ENST00000492957		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
intron-intron	ENST00000479757	ENST00000336199		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
intron-5UTR	ENST00000479757	ENST00000366540		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
intron-5UTR	ENST00000479757	ENST00000366539		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
intron-intron	ENST00000479757	ENST00000263826		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
intron-intron	ENST00000479757	ENST00000492957		ChiTaRS3.1			DB216983	GOLPH3L	chr1	150667131	-	AKT3	chr1	244006586	-
intron-intron	ENST00000225964	ENST00000543252		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000344138		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000540310		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-intron	ENST00000225964	ENST00000478445		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000544756		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000399090		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-intron	ENST00000225964	ENST00000407075		ChiTaRS3.1			AI277343	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3CDS	ENST00000541428	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000541428	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000541428	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000541428	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000379454	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000379454	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000379454	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000379454	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000523897	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000523897	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000523897	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000523897	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522919	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522919	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522919	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000522919	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000356457	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000356457	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000356457	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000356457	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000518068	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000518068	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000518068	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000518068	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517903	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517903	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517903	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000517903	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000445642	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000445642	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000445642	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000445642	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517847	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517847	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517847	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000517847	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522835	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522835	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522835	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000522835	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517856	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517856	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517856	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000517856	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000389204	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000389204	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000389204	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000389204	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522603	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522603	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000522603	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000522603	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000379449	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000379449	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000379449	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000379449	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517661	ENST00000543788		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517661	ENST00000371361		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3CDS	ENST00000517661	ENST00000371350		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-5UTR	ENST00000517661	ENST00000463649		ChiTaRS3.1			BE173287	ASPH	chr8	62566165	-	NOC3L	chr10	96112683	-
intron-3UTR	ENST00000377227	ENST00000534336		ChiTaRS3.1			CB986884	UIMC1	chr5	176332463	-	MALAT1	chr11	65266555	+
intron-3UTR	ENST00000377219	ENST00000534336		ChiTaRS3.1			CB986884	UIMC1	chr5	176332463	-	MALAT1	chr11	65266555	+
intron-3UTR	ENST00000506128	ENST00000534336		ChiTaRS3.1			CB986884	UIMC1	chr5	176332463	-	MALAT1	chr11	65266555	+
intron-3UTR	ENST00000511320	ENST00000534336		ChiTaRS3.1			CB986884	UIMC1	chr5	176332463	-	MALAT1	chr11	65266555	+
intron-3UTR	ENST00000503273	ENST00000534336		ChiTaRS3.1			CB986884	UIMC1	chr5	176332463	-	MALAT1	chr11	65266555	+
5UTR-3CDS	ENST00000340979	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
5UTR-3CDS	ENST00000368131	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
5UTR-3CDS	ENST00000368132	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
5UTR-3CDS	ENST00000295809	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
intron-3CDS	ENST00000430894	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
intron-3CDS	ENST00000359709	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
intron-3CDS	ENST00000448393	ENST00000234590		ChiTaRS3.1			DA702843	IFI16	chr1	158979793	+	ENO1	chr1	8938749	-
intron-3CDS	ENST00000388890	ENST00000543245		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000388890	ENST00000356839		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000388890	ENST00000350303		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-intron	ENST00000388890	ENST00000581562		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000323510	ENST00000543245		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000323510	ENST00000356839		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000323510	ENST00000350303		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-intron	ENST00000323510	ENST00000581562		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000483173	ENST00000543245		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000483173	ENST00000356839		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000483173	ENST00000350303		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-intron	ENST00000483173	ENST00000581562		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000467963	ENST00000543245		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000467963	ENST00000356839		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000467963	ENST00000350303		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-intron	ENST00000467963	ENST00000581562		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000435709	ENST00000543245		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000435709	ENST00000356839		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000435709	ENST00000350303		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-intron	ENST00000435709	ENST00000581562		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000494422	ENST00000543245		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000494422	ENST00000356839		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3CDS	ENST00000494422	ENST00000350303		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-intron	ENST00000494422	ENST00000581562		ChiTaRS3.1			AI659311	BRD9	chr5	864145	+	ACADVL	chr17	7127704	-
intron-3UTR	ENST00000397887	ENST00000397887		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000397887	ENST00000330938		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000397887	ENST00000445724		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000397887	ENST00000397886		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000397887	ENST00000494690		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000330938	ENST00000397887		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000330938	ENST00000330938		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000330938	ENST00000445724		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000330938	ENST00000397886		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000330938	ENST00000494690		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000445724	ENST00000397887		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000445724	ENST00000330938		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000445724	ENST00000445724		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000445724	ENST00000397886		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000445724	ENST00000494690		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000397886	ENST00000397887		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000397886	ENST00000330938		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000397886	ENST00000445724		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000397886	ENST00000397886		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000397886	ENST00000494690		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000494690	ENST00000397887		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-3UTR	ENST00000494690	ENST00000330938		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000494690	ENST00000445724		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000494690	ENST00000397886		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
intron-intron	ENST00000494690	ENST00000494690		ChiTaRS3.1			BM969022	PTTG1IP	chr21	46269923	+	PTTG1IP	chr21	46270135	-
5CDS-5UTR	ENST00000204566	ENST00000397063		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000204566	ENST00000397062		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000204566	ENST00000446151		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000204566	ENST00000464747		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000204566	ENST00000423513		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000559199	ENST00000397063		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000559199	ENST00000397062		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000559199	ENST00000446151		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000559199	ENST00000464747		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000559199	ENST00000423513		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000433215	ENST00000397063		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000433215	ENST00000397062		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000433215	ENST00000446151		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000433215	ENST00000464747		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000433215	ENST00000423513		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000416889	ENST00000397063		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000416889	ENST00000397062		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000416889	ENST00000446151		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000416889	ENST00000464747		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
5CDS-5UTR	ENST00000416889	ENST00000423513		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
intron-5UTR	ENST00000560564	ENST00000397063		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
intron-5UTR	ENST00000560564	ENST00000397062		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
intron-5UTR	ENST00000560564	ENST00000446151		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
intron-5UTR	ENST00000560564	ENST00000464747		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
intron-5UTR	ENST00000560564	ENST00000423513		ChiTaRS3.1			DA025613	SPG21	chr15	65261591	-	NFE2L2	chr2	178098999	-
intron-intron	ENST00000450943	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000450943	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000354888	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393108	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393110	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393106	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000393107	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000409811	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000450943		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000354888		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000393108		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000393110		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000393106		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000393107		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000409811		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000425223	ENST00000425223		ChiTaRS3.1			AV648015	STEAP3	chr2	119994676	+	STEAP3	chr2	119994123	+
intron-intron	ENST00000366574	ENST00000424120		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000366574	ENST00000413206		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000366574	ENST00000503292		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000366574	ENST00000389652		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000366574	ENST00000438599		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000366574	ENST00000511544		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000366574	ENST00000513811		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000366574	ENST00000507954		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000366574	ENST00000515124		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000366574	ENST00000503658		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000424120		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000413206		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000503292		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000389652		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000360064	ENST00000438599		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000360064	ENST00000511544		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000513811		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000507954		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000360064	ENST00000515124		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000360064	ENST00000503658		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000424120		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000413206		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000503292		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000389652		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000542537	ENST00000438599		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000542537	ENST00000511544		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000513811		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000507954		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000542537	ENST00000515124		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000542537	ENST00000503658		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000424120		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000413206		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000503292		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000389652		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000609119	ENST00000438599		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000609119	ENST00000511544		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000513811		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000507954		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000609119	ENST00000515124		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-intron	ENST00000609119	ENST00000503658		ChiTaRS3.1			BM671510	RYR2	chr1	237983527	+	CC2D2A	chr4	15483689	-
intron-3UTR	ENST00000454189	ENST00000286298		ChiTaRS3.1			BE766380	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000398361	ENST00000286298		ChiTaRS3.1			BE766380	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000316715	ENST00000286298		ChiTaRS3.1			BE766380	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000493677	ENST00000286298		ChiTaRS3.1			BE766380	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000355135	ENST00000286298		ChiTaRS3.1			BE766380	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000356942	ENST00000286298		ChiTaRS3.1			BE766380	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
5CDS-5UTR	ENST00000361804	ENST00000392894		ChiTaRS3.1			BM834153	SMC3	chr10	112356258	+	RNF13	chr3	149530594	+
5CDS-5UTR	ENST00000361804	ENST00000344229		ChiTaRS3.1			BM834153	SMC3	chr10	112356258	+	RNF13	chr3	149530594	+
5CDS-intron	ENST00000361804	ENST00000361785		ChiTaRS3.1			BM834153	SMC3	chr10	112356258	+	RNF13	chr3	149530594	+
intron-5UTR	ENST00000462899	ENST00000392894		ChiTaRS3.1			BM834153	SMC3	chr10	112356258	+	RNF13	chr3	149530594	+
intron-5UTR	ENST00000462899	ENST00000344229		ChiTaRS3.1			BM834153	SMC3	chr10	112356258	+	RNF13	chr3	149530594	+
intron-intron	ENST00000462899	ENST00000361785		ChiTaRS3.1			BM834153	SMC3	chr10	112356258	+	RNF13	chr3	149530594	+
intron-3UTR	ENST00000340170	ENST00000373896		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000340170	ENST00000419155		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000340170	ENST00000487555		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000340170	ENST00000312189		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000263208	ENST00000373896		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000263208	ENST00000419155		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000263208	ENST00000487555		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000263208	ENST00000312189		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000541063	ENST00000373896		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000541063	ENST00000419155		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000541063	ENST00000487555		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000541063	ENST00000312189		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000546308	ENST00000373896		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000546308	ENST00000419155		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000546308	ENST00000487555		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000546308	ENST00000312189		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-3UTR	ENST00000464189	ENST00000373896		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000464189	ENST00000419155		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000464189	ENST00000487555		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-intron	ENST00000464189	ENST00000312189		ChiTaRS3.1			BG002842	HIRA	chr22	19431059	-	PHF19	chr9	123618857	-
intron-5UTR	ENST00000311713	ENST00000492619		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000311713	ENST00000292291		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000311713	ENST00000356983		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000311713	ENST00000335852		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000311713	ENST00000368270		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000311713	ENST00000540423		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000278856	ENST00000492619		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000278856	ENST00000292291		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000278856	ENST00000356983		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000278856	ENST00000335852		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000278856	ENST00000368270		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000278856	ENST00000540423		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000529106	ENST00000492619		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000529106	ENST00000292291		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000529106	ENST00000356983		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000529106	ENST00000335852		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000529106	ENST00000368270		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000529106	ENST00000540423		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000525239	ENST00000492619		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000525239	ENST00000292291		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525239	ENST00000356983		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525239	ENST00000335852		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525239	ENST00000368270		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525239	ENST00000540423		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000525752	ENST00000492619		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000525752	ENST00000292291		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525752	ENST00000356983		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525752	ENST00000335852		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525752	ENST00000368270		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000525752	ENST00000540423		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000540620	ENST00000492619		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-5UTR	ENST00000540620	ENST00000292291		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000540620	ENST00000356983		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000540620	ENST00000335852		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000540620	ENST00000368270		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000540620	ENST00000540423		ChiTaRS3.1			DC337041	WDR74	chr11	62609094	-	PAQR6	chr1	156217848	-
intron-intron	ENST00000373627	ENST00000302003		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000344629		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000349503		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000302036		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000339511		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000436092		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000449570		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000302008		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373627	ENST00000383826		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000302003		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000344629		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000349503		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000302036		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000339511		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000436092		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000449570		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000302008		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000373616	ENST00000383826		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000302003		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000344629		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000349503		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000302036		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000339511		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000436092		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000449570		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000302008		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000471737	ENST00000383826		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000302003		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000344629		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000349503		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000302036		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000339511		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000436092		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000449570		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000302008		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
intron-intron	ENST00000538808	ENST00000383826		ChiTaRS3.1			BQ188595	MTCH1	chr6	36940526	-	OGG1	chr3	9804597	-
3UTR-3UTR	ENST00000534336	ENST00000590550		ChiTaRS3.1			AV750455	MALAT1	chr11	65266805	+	MBD3	chr19	1577041	-
3UTR-3UTR	ENST00000534336	ENST00000434436		ChiTaRS3.1			AV750455	MALAT1	chr11	65266805	+	MBD3	chr19	1577041	-
3UTR-3UTR	ENST00000534336	ENST00000592012		ChiTaRS3.1			AV750455	MALAT1	chr11	65266805	+	MBD3	chr19	1577041	-
3UTR-3UTR	ENST00000534336	ENST00000156825		ChiTaRS3.1			AV750455	MALAT1	chr11	65266805	+	MBD3	chr19	1577041	-
3UTR-intron	ENST00000534336	ENST00000585967		ChiTaRS3.1			AV750455	MALAT1	chr11	65266805	+	MBD3	chr19	1577041	-
3UTR-3UTR	ENST00000266546	ENST00000204961		ChiTaRS3.1			CA421658	CLSTN3	chr12	7311431	-	EFNB1	chrX	68061880	-
3UTR-3UTR	ENST00000537408	ENST00000204961		ChiTaRS3.1			CA421658	CLSTN3	chr12	7311431	-	EFNB1	chrX	68061880	-
3UTR-3UTR	ENST00000331148	ENST00000204961		ChiTaRS3.1			CA421658	CLSTN3	chr12	7311431	-	EFNB1	chrX	68061880	-
intron-3CDS	ENST00000269554	ENST00000316757		ChiTaRS3.1			AA972703	PIP4K2B	chr17	36955896	-	APBA3	chr19	3752608	-
intron-3CDS	ENST00000311500	ENST00000316757		ChiTaRS3.1			AA972703	PIP4K2B	chr17	36955896	-	APBA3	chr19	3752608	-
Frame-shit	ENST00000369239	ENST00000369046		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000369239	ENST00000467262		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000369239	ENST00000369044		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
Frame-shit	ENST00000438806	ENST00000369046		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000438806	ENST00000467262		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000438806	ENST00000369044		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-3CDS	ENST00000466057	ENST00000369046		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-intron	ENST00000466057	ENST00000467262		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-intron	ENST00000466057	ENST00000369044		ChiTaRS3.1			CA841180	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-3UTR	ENST00000528896	ENST00000312413		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000528896	ENST00000346436		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000528896	ENST00000376497		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000528896	ENST00000376487		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000528896	ENST00000376496		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000528896	ENST00000376492		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000544884	ENST00000312413		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000544884	ENST00000346436		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000544884	ENST00000376497		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000544884	ENST00000376487		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000544884	ENST00000376496		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000544884	ENST00000376492		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000389003	ENST00000312413		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000389003	ENST00000346436		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000389003	ENST00000376497		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000389003	ENST00000376487		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000389003	ENST00000376496		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000389003	ENST00000376492		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000579924	ENST00000312413		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-3UTR	ENST00000579924	ENST00000346436		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000579924	ENST00000376497		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000579924	ENST00000376487		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000579924	ENST00000376496		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000579924	ENST00000376492		ChiTaRS3.1			BF745626	KIAA0100	chr17	26966416	-	CLCN6	chr1	11896066	+
intron-intron	ENST00000504487	ENST00000233146		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000504487	ENST00000543555		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000504487	ENST00000406134		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000504487	ENST00000461394		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000428116	ENST00000233146		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000428116	ENST00000543555		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000428116	ENST00000406134		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000428116	ENST00000461394		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000389609	ENST00000233146		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000389609	ENST00000543555		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000389609	ENST00000406134		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000389609	ENST00000461394		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000502801	ENST00000233146		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000502801	ENST00000543555		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000502801	ENST00000406134		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000502801	ENST00000461394		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000508236	ENST00000233146		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000508236	ENST00000543555		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000508236	ENST00000406134		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-intron	ENST00000508236	ENST00000461394		ChiTaRS3.1			BE710079	CCDC149	chr4	24912062	-	MSH2	chr2	47779168	-
intron-3UTR	ENST00000371225	ENST00000371225		ChiTaRS3.1			AA531313	TACSTD2	chr1	59041360	-	TACSTD2	chr1	59041123	+
intron-3UTR	ENST00000421515	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000421515	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000421515	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000388759	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000388759	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000388759	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000443659	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000443659	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000443659	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000425478	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000425478	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000425478	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000437230	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000437230	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000437230	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000412028	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000412028	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000412028	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000415901	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000415901	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000415901	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000416026	ENST00000427025		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-3UTR	ENST00000416026	ENST00000343505		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
intron-intron	ENST00000416026	ENST00000479393		ChiTaRS3.1			AI278837	NKIRAS1	chr3	23960903	-	NHSL1	chr6	138743836	+
In-frame	ENST00000447866	ENST00000326735		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000447866	ENST00000341676		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000447866	ENST00000452699		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000447866	ENST00000502860		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
Frame-shit	ENST00000368356	ENST00000326735		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000368356	ENST00000341676		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000368356	ENST00000452699		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000368356	ENST00000502860		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
intron-3CDS	ENST00000487002	ENST00000326735		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
intron-intron	ENST00000487002	ENST00000341676		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
intron-intron	ENST00000487002	ENST00000452699		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
intron-intron	ENST00000487002	ENST00000502860		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
Frame-shit	ENST00000356657	ENST00000326735		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000356657	ENST00000341676		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000356657	ENST00000452699		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
5CDS-intron	ENST00000356657	ENST00000502860		ChiTaRS3.1			BF512311	FDPS	chr1	155290315	-	ATP13A2	chr1	17316435	+
3UTR-3UTR	ENST00000533603	ENST00000229270		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000533603	ENST00000396705		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-intron	ENST00000533603	ENST00000488464		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000533603	ENST00000535434		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000358171	ENST00000229270		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000358171	ENST00000396705		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-intron	ENST00000358171	ENST00000488464		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000358171	ENST00000535434		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
intron-3UTR	ENST00000530284	ENST00000229270		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
intron-3UTR	ENST00000530284	ENST00000396705		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
intron-intron	ENST00000530284	ENST00000488464		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
intron-3UTR	ENST00000530284	ENST00000535434		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000524558	ENST00000229270		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000524558	ENST00000396705		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-intron	ENST00000524558	ENST00000488464		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000524558	ENST00000535434		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000525876	ENST00000229270		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000525876	ENST00000396705		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-intron	ENST00000525876	ENST00000488464		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
3UTR-3UTR	ENST00000525876	ENST00000535434		ChiTaRS3.1			BQ000670	SERPINH1	chr11	75283546	-	TPI1	chr12	6979927	-
intron-3CDS	ENST00000296084	ENST00000296084		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-3CDS	ENST00000296084	ENST00000427044		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-intron	ENST00000296084	ENST00000484106		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-3CDS	ENST00000427044	ENST00000296084		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-3CDS	ENST00000427044	ENST00000427044		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-intron	ENST00000427044	ENST00000484106		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-3CDS	ENST00000484106	ENST00000296084		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-3CDS	ENST00000484106	ENST00000427044		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-intron	ENST00000484106	ENST00000484106		ChiTaRS3.1			BF767299	RYK	chr3	133894507	+	RYK	chr3	133878107	-
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082237	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-3UTR	ENST00000465150	ENST00000562057		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000465150	ENST00000344051		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000465150	ENST00000431806		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000562057		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000344051		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000431806		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000562057		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000344051		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000431806		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000562057		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000344051		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000431806		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000562057		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000344051		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000431806		ChiTaRS3.1			CB250487	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3CDS	ENST00000215832	ENST00000320580		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000215832	ENST00000529757		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000215832	ENST00000524815		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000398822	ENST00000320580		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000398822	ENST00000529757		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000398822	ENST00000524815		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000544786	ENST00000320580		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000544786	ENST00000529757		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000544786	ENST00000524815		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000491588	ENST00000320580		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000491588	ENST00000529757		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000491588	ENST00000524815		ChiTaRS3.1			AW500869	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000215832	ENST00000410075		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000215832	ENST00000377802		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000215832	ENST00000355812		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000215832	ENST00000409544		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000215832	ENST00000264447		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000215832	ENST00000409407		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000398822	ENST00000410075		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000398822	ENST00000377802		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000398822	ENST00000355812		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000398822	ENST00000409544		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000398822	ENST00000264447		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000398822	ENST00000409407		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000544786	ENST00000410075		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000544786	ENST00000377802		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000544786	ENST00000355812		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000544786	ENST00000409544		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000544786	ENST00000264447		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000544786	ENST00000409407		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000491588	ENST00000410075		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-intron	ENST00000491588	ENST00000377802		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000491588	ENST00000355812		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000491588	ENST00000409544		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000491588	ENST00000264447		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3UTR	ENST00000491588	ENST00000409407		ChiTaRS3.1			DB550111	MAPK1	chr22	22117635	-	ZNF638	chr2	71662116	+
intron-3CDS	ENST00000397707	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000560611	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000354181	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000458406	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000397702	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
Frame-shit	ENST00000290209	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000558667	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000558589	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000451844	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
intron-3CDS	ENST00000560164	ENST00000371711		ChiTaRS3.1			DB237731	SLC12A6	chr15	34610762	-	B4GALT5	chr20	48273242	-
Frame-shit	ENST00000324932	ENST00000343483		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000324932	ENST00000497089		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000324932	ENST00000396345		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
Frame-shit	ENST00000359171	ENST00000343483		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000359171	ENST00000497089		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000359171	ENST00000396345		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
Frame-shit	ENST00000355260	ENST00000343483		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000355260	ENST00000497089		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000355260	ENST00000396345		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
Frame-shit	ENST00000397004	ENST00000343483		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000397004	ENST00000497089		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000397004	ENST00000396345		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
Frame-shit	ENST00000397007	ENST00000343483		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000397007	ENST00000497089		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
5CDS-intron	ENST00000397007	ENST00000396345		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
intron-3CDS	ENST00000488828	ENST00000343483		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
intron-intron	ENST00000488828	ENST00000497089		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
intron-intron	ENST00000488828	ENST00000396345		ChiTaRS3.1			U41814	NUP98	chr11	3765739	-	HOXA9	chr7	27204588	-
intron-intron	ENST00000431530	ENST00000377996		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-5UTR	ENST00000431530	ENST00000439587		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-5UTR	ENST00000431530	ENST00000377991		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-3UTR	ENST00000431530	ENST00000473947		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-5UTR	ENST00000431530	ENST00000377988		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-intron	ENST00000380808	ENST00000377996		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-5UTR	ENST00000380808	ENST00000439587		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-5UTR	ENST00000380808	ENST00000377991		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-3UTR	ENST00000380808	ENST00000473947		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-5UTR	ENST00000380808	ENST00000377988		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-intron	ENST00000542829	ENST00000377996		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-5UTR	ENST00000542829	ENST00000439587		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-5UTR	ENST00000542829	ENST00000377991		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-3UTR	ENST00000542829	ENST00000473947		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
5UTR-5UTR	ENST00000542829	ENST00000377988		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-intron	ENST00000400542	ENST00000377996		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-5UTR	ENST00000400542	ENST00000439587		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-5UTR	ENST00000400542	ENST00000377991		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-3UTR	ENST00000400542	ENST00000473947		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-5UTR	ENST00000400542	ENST00000377988		ChiTaRS3.1			BI756975	MTUS2	chr13	30002954	+	TMEM8B	chr9	35834456	+
intron-intron	ENST00000264896	ENST00000415654		ChiTaRS3.1			BF811415	SCARB2	chr4	77082679	-	NPIPB5	chr16	21848649	-
intron-intron	ENST00000264896	ENST00000424340		ChiTaRS3.1			BF811415	SCARB2	chr4	77082679	-	NPIPB5	chr16	21848649	-
intron-intron	ENST00000264896	ENST00000517539		ChiTaRS3.1			BF811415	SCARB2	chr4	77082679	-	NPIPB5	chr16	21848649	-
intron-intron	ENST00000452464	ENST00000415654		ChiTaRS3.1			BF811415	SCARB2	chr4	77082679	-	NPIPB5	chr16	21848649	-
intron-intron	ENST00000452464	ENST00000424340		ChiTaRS3.1			BF811415	SCARB2	chr4	77082679	-	NPIPB5	chr16	21848649	-
intron-intron	ENST00000452464	ENST00000517539		ChiTaRS3.1			BF811415	SCARB2	chr4	77082679	-	NPIPB5	chr16	21848649	-
intron-3UTR	ENST00000336023	ENST00000396976		ChiTaRS3.1			CN426333	TUBA1B	chr12	49522507	-	ZSCAN29	chr15	43651227	-
intron-3UTR	ENST00000336023	ENST00000396972		ChiTaRS3.1			CN426333	TUBA1B	chr12	49522507	-	ZSCAN29	chr15	43651227	-
intron-intron	ENST00000336023	ENST00000568898		ChiTaRS3.1			CN426333	TUBA1B	chr12	49522507	-	ZSCAN29	chr15	43651227	-
intron-intron	ENST00000336023	ENST00000562072		ChiTaRS3.1			CN426333	TUBA1B	chr12	49522507	-	ZSCAN29	chr15	43651227	-
intron-intron	ENST00000336023	ENST00000563508		ChiTaRS3.1			CN426333	TUBA1B	chr12	49522507	-	ZSCAN29	chr15	43651227	-
intron-intron	ENST00000375300	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375300	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000292055	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000375288	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000434315	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000542607	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000446921	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000604938		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000401010		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000339388		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000369323		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000605317		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000479926		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000604894		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-intron	ENST00000488337	ENST00000401009		ChiTaRS3.1			AW899316	SIK3	chr11	116746604	-	NBPF11	chr1	148241763	-
intron-3UTR	ENST00000301764	ENST00000318789		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000475937		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000493089		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000484350		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000318779		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000491238		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000498215		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000468577		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000301764	ENST00000472382		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-3UTR	ENST00000450997	ENST00000318789		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000475937		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000493089		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000484350		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000318779		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000491238		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000498215		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000468577		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000450997	ENST00000472382		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-3UTR	ENST00000451943	ENST00000318789		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000475937		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000493089		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000484350		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000318779		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000491238		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000498215		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000468577		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000451943	ENST00000472382		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-3UTR	ENST00000538470	ENST00000318789		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000475937		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000493089		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000484350		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000318779		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000491238		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000498215		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000468577		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000538470	ENST00000472382		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-3UTR	ENST00000545930	ENST00000318789		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000475937		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000493089		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000484350		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000318779		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000491238		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000498215		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000468577		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-intron	ENST00000545930	ENST00000472382		ChiTaRS3.1			H45478	DDB1	chr11	61091528	-	FOXP1	chr3	71005534	-
intron-3CDS	ENST00000372491	ENST00000373001		ChiTaRS3.1			BF127662	IER5L	chr9	131940359	-	RRAGC	chr1	39325210	-
intron-intron	ENST00000372491	ENST00000474456		ChiTaRS3.1			BF127662	IER5L	chr9	131940359	-	RRAGC	chr1	39325210	-
5CDS-5UTR	ENST00000560079	ENST00000373548		ChiTaRS3.1			BU174429	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000373541		ChiTaRS3.1			BU174429	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000490081		ChiTaRS3.1			BU174429	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-5UTR	ENST00000299927	ENST00000373548		ChiTaRS3.1			BU174429	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000373541		ChiTaRS3.1			BU174429	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000490081		ChiTaRS3.1			BU174429	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
3UTR-5UTR	ENST00000395386	ENST00000325558		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-intron	ENST00000395386	ENST00000543125		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-intron	ENST00000395386	ENST00000538258		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-5UTR	ENST00000337920	ENST00000325558		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-intron	ENST00000337920	ENST00000543125		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-intron	ENST00000337920	ENST00000538258		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-5UTR	ENST00000395376	ENST00000325558		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-intron	ENST00000395376	ENST00000543125		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-intron	ENST00000395376	ENST00000538258		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-5UTR	ENST00000220847	ENST00000325558		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-intron	ENST00000220847	ENST00000543125		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-intron	ENST00000220847	ENST00000538258		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-5UTR	ENST00000395390	ENST00000325558		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-intron	ENST00000395390	ENST00000543125		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
3UTR-intron	ENST00000395390	ENST00000538258		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-5UTR	ENST00000395379	ENST00000325558		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-intron	ENST00000395379	ENST00000543125		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-intron	ENST00000395379	ENST00000538258		ChiTaRS3.1			DA968334	PHF20L1	chr8	133858667	+	PGA3	chr11	60970987	+
intron-3CDS	ENST00000233242	ENST00000295897		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000233242	ENST00000415165		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000233242	ENST00000503124		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000233242	ENST00000509063		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000233242	ENST00000401494		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3UTR	ENST00000233242	ENST00000505649		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000399256	ENST00000295897		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000399256	ENST00000415165		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000399256	ENST00000503124		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000399256	ENST00000509063		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000399256	ENST00000401494		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3UTR	ENST00000399256	ENST00000505649		ChiTaRS3.1			BG562874	APOB	chr2	21227268	-	ALB	chr4	74279174	+
intron-3CDS	ENST00000397887	ENST00000465271		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000397887	ENST00000366858		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000397887	ENST00000366857		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000397887	ENST00000468318		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000397887	ENST00000366856		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000330938	ENST00000465271		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000330938	ENST00000366858		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000330938	ENST00000366857		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000330938	ENST00000468318		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000330938	ENST00000366856		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000445724	ENST00000465271		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000445724	ENST00000366858		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000445724	ENST00000366857		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000445724	ENST00000468318		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000445724	ENST00000366856		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000397886	ENST00000465271		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000397886	ENST00000366858		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000397886	ENST00000366857		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000397886	ENST00000468318		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000397886	ENST00000366856		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000494690	ENST00000465271		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000494690	ENST00000366858		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3CDS	ENST00000494690	ENST00000366857		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000494690	ENST00000468318		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-3UTR	ENST00000494690	ENST00000366856		ChiTaRS3.1			AW374030	PTTG1IP	chr21	46270124	-	CNIH4	chr1	224553606	+
intron-intron	ENST00000297185	ENST00000247138		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000297185	ENST00000376529		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-5UTR	ENST00000297185	ENST00000376521		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000297185	ENST00000445167		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000297185	ENST00000413561		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000297185	ENST00000376515		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000297185	ENST00000452555		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000297185	ENST00000376512		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000247138		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000376529		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-5UTR	ENST00000501917	ENST00000376521		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000445167		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000413561		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000376515		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000452555		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000501917	ENST00000376512		ChiTaRS3.1			BM835588	HSPA9	chr5	137893155	-	SLC35A2	chrX	48768953	-
intron-intron	ENST00000272134	ENST00000481781		ChiTaRS3.1			AF087859	LEFTY1	chr1	226108087	-	INS-IGF2	chr11	2153893	-
intron-intron	ENST00000272134	ENST00000397270		ChiTaRS3.1			AF087859	LEFTY1	chr1	226108087	-	INS-IGF2	chr11	2153893	-
intron-intron	ENST00000492457	ENST00000481781		ChiTaRS3.1			AF087859	LEFTY1	chr1	226108087	-	INS-IGF2	chr11	2153893	-
intron-intron	ENST00000492457	ENST00000397270		ChiTaRS3.1			AF087859	LEFTY1	chr1	226108087	-	INS-IGF2	chr11	2153893	-
intron-3CDS	ENST00000382743	ENST00000312865		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000382743	ENST00000538643		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000525319	ENST00000312865		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000525319	ENST00000538643		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000524564	ENST00000312865		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000524564	ENST00000538643		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000532956	ENST00000312865		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000532956	ENST00000538643		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000529382	ENST00000312865		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000529382	ENST00000538643		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000528702	ENST00000312865		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
intron-3CDS	ENST00000528702	ENST00000538643		ChiTaRS3.1			BI036185	SIRT3	chr11	234864	-	MED25	chr19	50334666	+
3UTR-intron	ENST00000375549	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000375549	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528182	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000528048	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000528021	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000526592	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
3UTR-intron	ENST00000525291	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000532699	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000409728		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000409043		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000409195		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000409756		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000420519		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000295237		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000409273		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-intron	ENST00000525468	ENST00000409605		ChiTaRS3.1			AA213804	SDHD	chr11	111965774	+	XIRP2	chr2	168106959	+
intron-3UTR	ENST00000553221	ENST00000424272		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-3UTR	ENST00000553221	ENST00000409929		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000553221	ENST00000409589		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000553221	ENST00000409329		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000553221	ENST00000409288		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000553221	ENST00000410023		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000553221	ENST00000233946		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-3UTR	ENST00000257910	ENST00000424272		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-3UTR	ENST00000257910	ENST00000409929		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000257910	ENST00000409589		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000257910	ENST00000409329		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000257910	ENST00000409288		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000257910	ENST00000410023		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000257910	ENST00000233946		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-3UTR	ENST00000547992	ENST00000424272		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-3UTR	ENST00000547992	ENST00000409929		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000547992	ENST00000409589		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000547992	ENST00000409329		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000547992	ENST00000409288		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000547992	ENST00000410023		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
3UTR-intron	ENST00000547992	ENST00000233946		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-3UTR	ENST00000547472	ENST00000424272		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-3UTR	ENST00000547472	ENST00000409929		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000547472	ENST00000409589		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000547472	ENST00000409329		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000547472	ENST00000409288		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000547472	ENST00000410023		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
intron-intron	ENST00000547472	ENST00000233946		ChiTaRS3.1			AW262008	TSPAN31	chr12	58141808	-	IL1R1	chr2	102793174	-
In-frame	ENST00000321949	ENST00000524717		ChiTaRS3.1			AY186997	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
In-frame	ENST00000338797	ENST00000524717		ChiTaRS3.1			AY186997	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
intron-3CDS	ENST00000594658	ENST00000524717		ChiTaRS3.1			AY186997	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
intron-3CDS	ENST00000601916	ENST00000524717		ChiTaRS3.1			AY186997	CRTC1	chr19	18794638	+	MAML2	chr11	95826682	-
intron-3CDS	ENST00000371571	ENST00000379440		ChiTaRS3.1			AI810741	KCNG1	chr20	49620475	+	PRNP	chr20	4680271	-
intron-3CDS	ENST00000371571	ENST00000430350		ChiTaRS3.1			AI810741	KCNG1	chr20	49620475	+	PRNP	chr20	4680271	-
intron-3CDS	ENST00000506387	ENST00000379440		ChiTaRS3.1			AI810741	KCNG1	chr20	49620475	+	PRNP	chr20	4680271	-
intron-3CDS	ENST00000506387	ENST00000430350		ChiTaRS3.1			AI810741	KCNG1	chr20	49620475	+	PRNP	chr20	4680271	-
intron-3CDS	ENST00000396017	ENST00000379440		ChiTaRS3.1			AI810741	KCNG1	chr20	49620475	+	PRNP	chr20	4680271	-
intron-3CDS	ENST00000396017	ENST00000430350		ChiTaRS3.1			AI810741	KCNG1	chr20	49620475	+	PRNP	chr20	4680271	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15914	COL1A1	chr17	48264844	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15914	COL1A1	chr17	48264844	-	PDGFB	chr22	39631879	-
intron-3UTR	ENST00000375587	ENST00000355666		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375587	ENST00000399017		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375587	ENST00000354749		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375587	ENST00000479930		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000375587	ENST00000540756		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000375587	ENST00000399010		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375579	ENST00000355666		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375579	ENST00000399017		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375579	ENST00000354749		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375579	ENST00000479930		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000375579	ENST00000540756		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000375579	ENST00000399010		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375576	ENST00000355666		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375576	ENST00000399017		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375576	ENST00000354749		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-3UTR	ENST00000375576	ENST00000479930		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000375576	ENST00000540756		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000375576	ENST00000399010		ChiTaRS3.1			AW361429	CENPP	chr9	95146848	-	TTC3	chr21	38574041	+
intron-intron	ENST00000339556	ENST00000541908		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000339556	ENST00000398864		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000339556	ENST00000266508		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000339556	ENST00000360995		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392622	ENST00000541908		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392622	ENST00000398864		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392622	ENST00000266508		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392622	ENST00000360995		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392623	ENST00000541908		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392623	ENST00000398864		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392623	ENST00000266508		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000392623	ENST00000360995		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000440685	ENST00000541908		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000440685	ENST00000398864		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000440685	ENST00000266508		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000440685	ENST00000360995		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000368699	ENST00000541908		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000368699	ENST00000398864		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000368699	ENST00000266508		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000368699	ENST00000360995		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000491177	ENST00000541908		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000491177	ENST00000398864		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000491177	ENST00000266508		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-intron	ENST00000491177	ENST00000360995		ChiTaRS3.1			DA414442	S100A13	chr1	153604251	+	AEBP2	chr12	19592963	+
intron-3CDS	ENST00000460780	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000460780	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000460780	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000460780	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000460780	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000460780	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367318	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367318	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367318	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367318	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367318	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367318	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367322	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367322	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367322	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367322	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367322	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367322	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367315	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367315	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367315	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367315	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367315	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367315	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000236918	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000236918	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000236918	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000236918	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000236918	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000236918	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000360372	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000360372	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000360372	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000360372	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000360372	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000360372	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367317	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367317	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367317	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367317	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367317	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367317	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000458432	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000458432	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000458432	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000458432	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000458432	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000458432	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000421663	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000421663	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000421663	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000421663	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000421663	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000421663	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367320	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367320	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000367320	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367320	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367320	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000367320	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000509001	ENST00000340437		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000509001	ENST00000394888		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3CDS	ENST00000509001	ENST00000439958		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000509001	ENST00000494016		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000509001	ENST00000448745		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-intron	ENST00000509001	ENST00000541963		ChiTaRS3.1			AI015129	TNNT2	chr1	201328204	+	CPSF7	chr11	61183821	+
intron-3UTR	ENST00000380317	ENST00000458659		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-intron	ENST00000380317	ENST00000501704		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-3UTR	ENST00000380317	ENST00000261489		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-intron	ENST00000380317	ENST00000460842		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-3UTR	ENST00000576194	ENST00000458659		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-intron	ENST00000576194	ENST00000501704		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-3UTR	ENST00000576194	ENST00000261489		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-intron	ENST00000576194	ENST00000460842		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-3UTR	ENST00000215115	ENST00000458659		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-intron	ENST00000215115	ENST00000501704		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-3UTR	ENST00000215115	ENST00000261489		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-intron	ENST00000215115	ENST00000460842		ChiTaRS3.1			AI342324	BCL7C	chr16	30899231	+	TSC22D1	chr13	45008748	+
intron-3CDS	ENST00000532456	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
intron-3CDS	ENST00000532456	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000539648	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000539648	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000528499	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000528499	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000263574	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000263574	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
intron-3CDS	ENST00000345598	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
intron-3CDS	ENST00000345598	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000338167	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000338167	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000278756	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000278756	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000543137	ENST00000344034		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
Frame-shit	ENST00000543137	ENST00000350803		ChiTaRS3.1			AA853757	APLP2	chr11	129992267	+	PPM1G	chr2	27606944	-
5UTR-5UTR	ENST00000367689	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
5UTR-5UTR	ENST00000367689	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
5UTR-5UTR	ENST00000357444	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
5UTR-5UTR	ENST00000357444	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
5UTR-5UTR	ENST00000251507	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
5UTR-5UTR	ENST00000251507	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000325589	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000325589	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000367686	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000367686	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000367687	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000367687	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000347255	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000347255	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000489615	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000489615	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000478442	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000478442	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000486220	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000486220	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000392064	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000392064	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000367688	ENST00000372970		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-5UTR	ENST00000367688	ENST00000255174		ChiTaRS3.1			DB034206	RABGAP1L	chr1	174128795	+	OSER1	chr20	42835640	-
intron-intron	ENST00000543385	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000543385		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000336727		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000344733		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000382788		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000306648		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000338806		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000508158		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000538395		ChiTaRS3.1			AI672578	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
5CDS-intron	ENST00000256429	ENST00000392859		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
5CDS-intron	ENST00000256429	ENST00000359415		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
5CDS-intron	ENST00000256429	ENST00000534182		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
5CDS-intron	ENST00000256429	ENST00000264028		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000579025	ENST00000392859		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000579025	ENST00000359415		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000579025	ENST00000534182		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000579025	ENST00000264028		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000398398	ENST00000392859		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000398398	ENST00000359415		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000398398	ENST00000534182		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000398398	ENST00000264028		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000583046	ENST00000392859		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000583046	ENST00000359415		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000583046	ENST00000534182		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-intron	ENST00000583046	ENST00000264028		ChiTaRS3.1			X81198	MBD2	chr18	51715244	-	ARCN1	chr11	118452058	+
intron-3UTR	ENST00000422989	ENST00000389629		ChiTaRS3.1			BM541733	IRGQ	chr19	44092547	-	RTF1	chr15	41774263	+
intron-intron	ENST00000422989	ENST00000462276		ChiTaRS3.1			BM541733	IRGQ	chr19	44092547	-	RTF1	chr15	41774263	+
intron-3UTR	ENST00000601520	ENST00000389629		ChiTaRS3.1			BM541733	IRGQ	chr19	44092547	-	RTF1	chr15	41774263	+
intron-intron	ENST00000601520	ENST00000462276		ChiTaRS3.1			BM541733	IRGQ	chr19	44092547	-	RTF1	chr15	41774263	+
intron-3UTR	ENST00000602269	ENST00000389629		ChiTaRS3.1			BM541733	IRGQ	chr19	44092547	-	RTF1	chr15	41774263	+
intron-intron	ENST00000602269	ENST00000462276		ChiTaRS3.1			BM541733	IRGQ	chr19	44092547	-	RTF1	chr15	41774263	+
5CDS-intron	ENST00000536255	ENST00000375743		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000536255	ENST00000537142		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000536255	ENST00000375733		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000536255	ENST00000448462		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000536255	ENST00000479282		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381208	ENST00000375743		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381208	ENST00000537142		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381208	ENST00000375733		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381208	ENST00000448462		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381208	ENST00000479282		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381209	ENST00000375743		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381209	ENST00000537142		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381209	ENST00000375733		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381209	ENST00000448462		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000381209	ENST00000479282		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000327154	ENST00000375743		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000327154	ENST00000537142		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000327154	ENST00000375733		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000327154	ENST00000448462		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000327154	ENST00000479282		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000405578	ENST00000375743		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000405578	ENST00000537142		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000405578	ENST00000375733		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000405578	ENST00000448462		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000405578	ENST00000479282		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000574003	ENST00000375743		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000574003	ENST00000537142		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000574003	ENST00000375733		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000574003	ENST00000448462		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
5CDS-intron	ENST00000574003	ENST00000479282		ChiTaRS3.1			BM983052	RPAIN	chr17	5324653	-	ZBTB17	chr1	16284233	+
intron-5UTR	ENST00000402989	ENST00000351797		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000402989	ENST00000522858		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000402989	ENST00000520667		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-intron	ENST00000402989	ENST00000518946		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000402989	ENST00000520313		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000448223	ENST00000351797		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000448223	ENST00000522858		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000448223	ENST00000520667		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-intron	ENST00000448223	ENST00000518946		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000448223	ENST00000520313		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000351948	ENST00000351797		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000351948	ENST00000522858		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000351948	ENST00000520667		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-intron	ENST00000351948	ENST00000518946		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000351948	ENST00000520313		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000381272	ENST00000351797		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000381272	ENST00000522858		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000381272	ENST00000520667		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-intron	ENST00000381272	ENST00000518946		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000381272	ENST00000520313		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000489535	ENST00000351797		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000489535	ENST00000522858		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000489535	ENST00000520667		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-intron	ENST00000489535	ENST00000518946		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
intron-5UTR	ENST00000489535	ENST00000520313		ChiTaRS3.1			DB021139	SMC6	chr2	17935234	+	FAM114A2	chr5	153414529	-
5CDS-intron	ENST00000376701	ENST00000340170		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
5CDS-intron	ENST00000376701	ENST00000263208		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
5CDS-intron	ENST00000376701	ENST00000541063		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
5CDS-intron	ENST00000376701	ENST00000546308		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
5CDS-intron	ENST00000376701	ENST00000464189		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
3UTR-intron	ENST00000483750	ENST00000340170		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
3UTR-intron	ENST00000483750	ENST00000263208		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
3UTR-intron	ENST00000483750	ENST00000541063		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
3UTR-intron	ENST00000483750	ENST00000546308		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
3UTR-intron	ENST00000483750	ENST00000464189		ChiTaRS3.1			CR987125	WAS	chrX	48542782	+	HIRA	chr22	19423216	+
5CDS-3UTR	ENST00000380737	ENST00000397821		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000380737	ENST00000379716		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000380737	ENST00000379698		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000380737	ENST00000541422		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-intron	ENST00000380737	ENST00000379697		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-intron	ENST00000380737	ENST00000477102		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000315985	ENST00000397821		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000315985	ENST00000379716		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000315985	ENST00000379698		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-3UTR	ENST00000315985	ENST00000541422		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-intron	ENST00000315985	ENST00000379697		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5CDS-intron	ENST00000315985	ENST00000477102		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
intron-3UTR	ENST00000523473	ENST00000397821		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
intron-3UTR	ENST00000523473	ENST00000379716		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
intron-3UTR	ENST00000523473	ENST00000379698		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
intron-3UTR	ENST00000523473	ENST00000541422		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
intron-intron	ENST00000523473	ENST00000379697		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
intron-intron	ENST00000523473	ENST00000477102		ChiTaRS3.1			BM014893	PPP2R2A	chr8	26227860	+	SH3KBP1	chrX	19554335	-
5UTR-5UTR	ENST00000333206	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000333206	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000420878	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000420878	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000589178	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000589178	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000383091	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000383091	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000601405	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000601405	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000592278	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000592278	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000588832	ENST00000378609		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000588832	ENST00000472614		ChiTaRS3.1			BF203707	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-3CDS	ENST00000316403	ENST00000360162		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000316403	ENST00000356080		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000316403	ENST00000277900		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-intron	ENST00000316403	ENST00000497125		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000546343	ENST00000360162		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000546343	ENST00000356080		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000546343	ENST00000277900		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-intron	ENST00000546343	ENST00000497125		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000560366	ENST00000360162		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000560366	ENST00000356080		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000560366	ENST00000277900		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-intron	ENST00000560366	ENST00000497125		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000405140	ENST00000360162		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000405140	ENST00000356080		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000405140	ENST00000277900		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-intron	ENST00000405140	ENST00000497125		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000523500	ENST00000360162		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000523500	ENST00000356080		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000523500	ENST00000277900		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-intron	ENST00000523500	ENST00000497125		ChiTaRS3.1			BQ719076	CLU	chr8	27466473	-	ADD3	chr10	111893082	+
intron-3CDS	ENST00000381340	ENST00000334082		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000381340	ENST00000535690		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000381340	ENST00000508576		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000381340	ENST00000282260		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-3CDS	ENST00000545902	ENST00000334082		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000545902	ENST00000535690		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000545902	ENST00000508576		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000545902	ENST00000282260		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-3CDS	ENST00000242737	ENST00000334082		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000242737	ENST00000535690		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000242737	ENST00000508576		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
intron-intron	ENST00000242737	ENST00000282260		ChiTaRS3.1			AK122857	ITPR2	chr12	26832853	-	HOMER1	chr5	78742912	-
In-frame	ENST00000262097	ENST00000302516		ChiTaRS3.1			DA755770	ASAH1	chr8	17933050	-	SF3B3	chr16	70575572	+
In-frame	ENST00000381733	ENST00000302516		ChiTaRS3.1			DA755770	ASAH1	chr8	17933050	-	SF3B3	chr16	70575572	+
5UTR-3CDS	ENST00000417108	ENST00000302516		ChiTaRS3.1			DA755770	ASAH1	chr8	17933050	-	SF3B3	chr16	70575572	+
In-frame	ENST00000520781	ENST00000302516		ChiTaRS3.1			DA755770	ASAH1	chr8	17933050	-	SF3B3	chr16	70575572	+
In-frame	ENST00000314146	ENST00000302516		ChiTaRS3.1			DA755770	ASAH1	chr8	17933050	-	SF3B3	chr16	70575572	+
5UTR-3CDS	ENST00000520051	ENST00000302516		ChiTaRS3.1			DA755770	ASAH1	chr8	17933050	-	SF3B3	chr16	70575572	+
In-frame	ENST00000378572	ENST00000281141		ChiTaRS3.1			BM798006	PRPF18	chr10	13642349	+	CDC123	chr10	12257737	+
5CDS-3UTR	ENST00000378572	ENST00000455773		ChiTaRS3.1			BM798006	PRPF18	chr10	13642349	+	CDC123	chr10	12257737	+
5CDS-3UTR	ENST00000378572	ENST00000378900		ChiTaRS3.1			BM798006	PRPF18	chr10	13642349	+	CDC123	chr10	12257737	+
3UTR-3UTR	ENST00000320912	ENST00000369005		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000513429		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000320912	ENST00000515273		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000320912	ENST00000515603		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000320912	ENST00000453444		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000358010		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000334433		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000369001		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000369000		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000360561		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000368999		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000369004		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000320912	ENST00000260733		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000320912	ENST00000493951		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000369005		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000513429		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-intron	ENST00000507420	ENST00000515273		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-intron	ENST00000507420	ENST00000515603		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-intron	ENST00000507420	ENST00000453444		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000358010		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000334433		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000369001		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000369000		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000360561		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000368999		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000369004		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-3UTR	ENST00000507420	ENST00000260733		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-intron	ENST00000507420	ENST00000493951		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000369005		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000513429		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000382581	ENST00000515273		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000382581	ENST00000515603		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000382581	ENST00000453444		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000358010		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000334433		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000369001		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000369000		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000360561		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000368999		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000369004		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-3UTR	ENST00000382581	ENST00000260733		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
3UTR-intron	ENST00000382581	ENST00000493951		ChiTaRS3.1			AA232766	MRFAP1	chr4	6644139	+	TACC2	chr10	124013892	+
intron-5UTR	ENST00000220849	ENST00000454366		ChiTaRS3.1			DA000478	EIF3E	chr8	109254115	-	GTSE1	chr22	46693275	+
intron-5UTR	ENST00000519030	ENST00000454366		ChiTaRS3.1			DA000478	EIF3E	chr8	109254115	-	GTSE1	chr22	46693275	+
intron-5UTR	ENST00000519517	ENST00000454366		ChiTaRS3.1			DA000478	EIF3E	chr8	109254115	-	GTSE1	chr22	46693275	+
5CDS-5UTR	ENST00000344771	ENST00000395957		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000344771	ENST00000395958		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000457309		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000395956		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000353245		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000522542		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000344771	ENST00000521309		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000522819		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000395953		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000395948		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000395951		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000419477		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000344771	ENST00000492736		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000395059	ENST00000395957		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000395059	ENST00000395958		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000457309		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000395956		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000353245		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000522542		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000395059	ENST00000521309		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000522819		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000395953		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000395948		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000395951		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000419477		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000395059	ENST00000492736		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000262518	ENST00000395957		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000262518	ENST00000395958		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000457309		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000395956		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000353245		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000522542		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-5UTR	ENST00000262518	ENST00000521309		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000522819		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000395953		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000395948		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000395951		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000419477		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000262518	ENST00000492736		ChiTaRS3.1			AA307240	SRCAP	chr16	30748642	+	YWHAZ	chr8	101964177	-
5CDS-intron	ENST00000354185	ENST00000374500		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000488034		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000607266		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000494751		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000488478		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000440279		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000374496		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000492510		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000487148		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000440930		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000435267		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
5CDS-intron	ENST00000354185	ENST00000485890		ChiTaRS3.1			CN260624	DDX21	chr10	70742480	+	CUTA	chr6	4865648	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15913	COL1A1	chr17	48267361	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15913	COL1A1	chr17	48267361	-	PDGFB	chr22	39631879	-
3UTR-3CDS	ENST00000393633	ENST00000415807		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
3UTR-3CDS	ENST00000393633	ENST00000336824		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
3UTR-3CDS	ENST00000393633	ENST00000416957		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
3UTR-intron	ENST00000393633	ENST00000392699		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
3UTR-intron	ENST00000393633	ENST00000421757		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
3UTR-intron	ENST00000393633	ENST00000423424		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
3UTR-intron	ENST00000393633	ENST00000476794		ChiTaRS3.1			BQ446022	NSUN5P1	chr7	75045665	-	FNDC3B	chr3	172058996	-
intron-3CDS	ENST00000372684	ENST00000540468		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000539919		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000258091		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000398422		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000537131		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000538797		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3UTR	ENST00000372684	ENST00000473786		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000540468		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000539919		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000258091		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000398422		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000537131		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000538797		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3UTR	ENST00000372683	ENST00000473786		ChiTaRS3.1			BE295614	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000489998	ENST00000335647		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
intron-intron	ENST00000489998	ENST00000335643		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
intron-intron	ENST00000489998	ENST00000367411		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
intron-5UTR	ENST00000489998	ENST00000494504		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
In-frame	ENST00000358292	ENST00000335647		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-intron	ENST00000358292	ENST00000335643		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-intron	ENST00000358292	ENST00000367411		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-5UTR	ENST00000358292	ENST00000494504		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
In-frame	ENST00000368176	ENST00000335647		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-intron	ENST00000368176	ENST00000335643		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-intron	ENST00000368176	ENST00000367411		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-5UTR	ENST00000368176	ENST00000494504		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
In-frame	ENST00000491942	ENST00000335647		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-intron	ENST00000491942	ENST00000335643		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-intron	ENST00000491942	ENST00000367411		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
5CDS-5UTR	ENST00000491942	ENST00000494504		ChiTaRS3.1			AA283968	FCRL1	chr1	157789797	-	KATNA1	chr6	149925919	-
Frame-shit	ENST00000336278	ENST00000443891		ChiTaRS3.1			DA927367	SNTB2	chr16	69221643	+	CTDSP1	chr2	219268023	+
Frame-shit	ENST00000336278	ENST00000273062		ChiTaRS3.1			DA927367	SNTB2	chr16	69221643	+	CTDSP1	chr2	219268023	+
5CDS-3UTR	ENST00000336278	ENST00000488627		ChiTaRS3.1			DA927367	SNTB2	chr16	69221643	+	CTDSP1	chr2	219268023	+
3UTR-3CDS	ENST00000528525	ENST00000443891		ChiTaRS3.1			DA927367	SNTB2	chr16	69221643	+	CTDSP1	chr2	219268023	+
3UTR-3CDS	ENST00000528525	ENST00000273062		ChiTaRS3.1			DA927367	SNTB2	chr16	69221643	+	CTDSP1	chr2	219268023	+
3UTR-3UTR	ENST00000528525	ENST00000488627		ChiTaRS3.1			DA927367	SNTB2	chr16	69221643	+	CTDSP1	chr2	219268023	+
In-frame	ENST00000377799	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000377799	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
3UTR-3CDS	ENST00000377766	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
3UTR-3CDS	ENST00000377766	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000412821	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000412821	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
3UTR-3CDS	ENST00000358282	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
3UTR-3CDS	ENST00000358282	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000351358	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000351358	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000457442	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
In-frame	ENST00000457442	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
5UTR-3CDS	ENST00000452380	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
5UTR-3CDS	ENST00000452380	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
intron-3CDS	ENST00000488990	ENST00000541773		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
intron-3CDS	ENST00000488990	ENST00000216286		ChiTaRS3.1			DA483206	TRDMT1	chr10	17195506	-	NID2	chr14	52486897	-
5CDS-intron	ENST00000261168	ENST00000593711		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000261168	ENST00000221722		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000261168	ENST00000391708		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000261168	ENST00000601070		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000261168	ENST00000599935		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000261168	ENST00000593931		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000543189	ENST00000593711		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000543189	ENST00000221722		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000543189	ENST00000391708		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000543189	ENST00000601070		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000543189	ENST00000599935		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000543189	ENST00000593931		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000536444	ENST00000593711		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000536444	ENST00000221722		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000536444	ENST00000391708		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000536444	ENST00000601070		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000536444	ENST00000599935		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000536444	ENST00000593931		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000544627	ENST00000593711		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000544627	ENST00000221722		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000544627	ENST00000391708		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000544627	ENST00000601070		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000544627	ENST00000599935		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000544627	ENST00000593931		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
3UTR-intron	ENST00000541654	ENST00000593711		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
3UTR-intron	ENST00000541654	ENST00000221722		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
3UTR-intron	ENST00000541654	ENST00000391708		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
3UTR-intron	ENST00000541654	ENST00000601070		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
3UTR-intron	ENST00000541654	ENST00000599935		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
3UTR-intron	ENST00000541654	ENST00000593931		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000540793	ENST00000593711		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000540793	ENST00000221722		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000540793	ENST00000391708		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000540793	ENST00000601070		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000540793	ENST00000599935		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000540793	ENST00000593931		ChiTaRS3.1			CN431174	ATF7IP	chr12	14577137	+	ZIM2	chr19	57325038	-
5CDS-intron	ENST00000302182	ENST00000443617		ChiTaRS3.1			AV743942	UBB	chr17	16285523	+	HERC1	chr15	64052625	+
intron-intron	ENST00000535788	ENST00000443617		ChiTaRS3.1			AV743942	UBB	chr17	16285523	+	HERC1	chr15	64052625	+
intron-intron	ENST00000578649	ENST00000443617		ChiTaRS3.1			AV743942	UBB	chr17	16285523	+	HERC1	chr15	64052625	+
5CDS-intron	ENST00000395839	ENST00000443617		ChiTaRS3.1			AV743942	UBB	chr17	16285523	+	HERC1	chr15	64052625	+
5CDS-intron	ENST00000395837	ENST00000443617		ChiTaRS3.1			AV743942	UBB	chr17	16285523	+	HERC1	chr15	64052625	+
intron-3CDS	ENST00000462405	ENST00000398844		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000462405	ENST00000322887		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370425	ENST00000398844		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370425	ENST00000322887		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000294696	ENST00000398844		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000294696	ENST00000322887		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370424	ENST00000398844		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
intron-3CDS	ENST00000370424	ENST00000322887		ChiTaRS3.1			DW412606	HFM1	chr1	91852874	-	SEC24A	chr5	134010430	+
5CDS-5UTR	ENST00000422156	ENST00000474210		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000422156	ENST00000394231		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000422156	ENST00000577810		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-5UTR	ENST00000540759	ENST00000474210		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000540759	ENST00000394231		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000540759	ENST00000577810		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-5UTR	ENST00000550465	ENST00000474210		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000550465	ENST00000394231		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000550465	ENST00000577810		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-5UTR	ENST00000354947	ENST00000474210		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000354947	ENST00000394231		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
5CDS-3UTR	ENST00000354947	ENST00000577810		ChiTaRS3.1			AW606546	PIP4K2C	chr12	57994730	+	MIEN1	chr17	37885744	-
intron-3CDS	ENST00000541529	ENST00000423620		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000541529	ENST00000433389		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000541529	ENST00000358397		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000541529	ENST00000454170		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-intron	ENST00000541529	ENST00000523347		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000270776	ENST00000423620		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000270776	ENST00000433389		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000270776	ENST00000358397		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000270776	ENST00000454170		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
5CDS-intron	ENST00000270776	ENST00000523347		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000538557	ENST00000423620		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000538557	ENST00000433389		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000538557	ENST00000358397		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
In-frame	ENST00000538557	ENST00000454170		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
5CDS-intron	ENST00000538557	ENST00000523347		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000498356	ENST00000423620		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000498356	ENST00000433389		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000498356	ENST00000358397		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-3CDS	ENST00000498356	ENST00000454170		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
intron-intron	ENST00000498356	ENST00000523347		ChiTaRS3.1			DA454694	PGD	chr1	10463154	+	ESRP1	chr8	95683825	+
5UTR-3CDS	ENST00000401950	ENST00000205948		ChiTaRS3.1			BG469920	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-3CDS	ENST00000333027	ENST00000205948		ChiTaRS3.1			BG469920	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-3CDS	ENST00000323630	ENST00000205948		ChiTaRS3.1			BG469920	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-3CDS	ENST00000351488	ENST00000205948		ChiTaRS3.1			BG469920	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
intron-3CDS	ENST00000406629	ENST00000205948		ChiTaRS3.1			BG469920	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
3UTR-3CDS	ENST00000415511	ENST00000205948		ChiTaRS3.1			BG469920	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-intron	ENST00000254977	ENST00000367469		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000254977	ENST00000367467		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000254977	ENST00000470750		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000399006	ENST00000367469		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000399006	ENST00000367467		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000399006	ENST00000470750		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000405977	ENST00000367469		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000405977	ENST00000367467		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
5UTR-intron	ENST00000405977	ENST00000470750		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000378226	ENST00000367469		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000378226	ENST00000367467		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000378226	ENST00000470750		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000488503	ENST00000367469		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000488503	ENST00000367467		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000488503	ENST00000470750		ChiTaRS3.1			CN387929	BTBD3	chr20	11871602	+	SASH1	chr6	148846426	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266523	FLI1	chr11	128660607	+	EWSR1	chr22	29684449	+
3UTR-3CDS	ENST00000342206	ENST00000320717		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-3CDS	ENST00000342206	ENST00000338435		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000342206	ENST00000409626		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000342206	ENST00000409428		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000342206	ENST00000409215		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000342206	ENST00000471443		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-3CDS	ENST00000356413	ENST00000320717		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-3CDS	ENST00000356413	ENST00000338435		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000356413	ENST00000409626		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000356413	ENST00000409428		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000356413	ENST00000409215		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
3UTR-intron	ENST00000356413	ENST00000471443		ChiTaRS3.1			AI564468	IGBP1	chrX	69386067	-	GLS	chr2	191788667	-
intron-5UTR	ENST00000375789	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000375789	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000375789	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000480913	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000480913	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000480913	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000375787	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000375787	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000375787	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000375792	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000375792	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000375792	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000443533	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000443533	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000443533	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000493926	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000493926	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000493926	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000413532	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000413532	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000413532	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000411456	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000411456	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000411456	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000451411	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000451411	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000451411	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000488668	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000488668	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000488668	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000430482	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000430482	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000430482	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000437889	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000437889	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000437889	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000414455	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000414455	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000414455	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000490871	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000490871	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000490871	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000444699	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000444699	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000444699	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000454138	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000454138	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000454138	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000400062	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000400062	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000400062	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000466207	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000466207	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000466207	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000383409	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000383409	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000383409	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000400063	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000400063	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000400063	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000413655	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000413655	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000413655	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000494351	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000494351	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000494351	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000424790	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000424790	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000424790	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000447101	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000447101	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000447101	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000427126	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000427126	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000427126	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000473167	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000473167	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000473167	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000426149	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000426149	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000426149	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000434464	ENST00000357056		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-5UTR	ENST00000434464	ENST00000328459		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
intron-intron	ENST00000434464	ENST00000554654		ChiTaRS3.1			BP229393	DDAH2	chr6	3027617	-	TTC7B	chr14	91282679	-
Frame-shit	ENST00000379440	ENST00000272542		ChiTaRS3.1			DA226673	PRNP	chr20	4679909	+	SLC20A1	chr2	113404639	+
5CDS-intron	ENST00000379440	ENST00000480984		ChiTaRS3.1			DA226673	PRNP	chr20	4679909	+	SLC20A1	chr2	113404639	+
Frame-shit	ENST00000430350	ENST00000272542		ChiTaRS3.1			DA226673	PRNP	chr20	4679909	+	SLC20A1	chr2	113404639	+
5CDS-intron	ENST00000430350	ENST00000480984		ChiTaRS3.1			DA226673	PRNP	chr20	4679909	+	SLC20A1	chr2	113404639	+
intron-5UTR	ENST00000435607	ENST00000435607		ChiTaRS3.1			CD608175	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000435607	ENST00000578147		ChiTaRS3.1			CD608175	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000435607		ChiTaRS3.1			CD608175	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000578147		ChiTaRS3.1			CD608175	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-3CDS	ENST00000225792	ENST00000263967		ChiTaRS3.1			CV347577	DDX5	chr17	62498313	-	PIK3CA	chr3	178947888	+
intron-3CDS	ENST00000450599	ENST00000263967		ChiTaRS3.1			CV347577	DDX5	chr17	62498313	-	PIK3CA	chr3	178947888	+
intron-3CDS	ENST00000578804	ENST00000263967		ChiTaRS3.1			CV347577	DDX5	chr17	62498313	-	PIK3CA	chr3	178947888	+
intron-3CDS	ENST00000580026	ENST00000263967		ChiTaRS3.1			CV347577	DDX5	chr17	62498313	-	PIK3CA	chr3	178947888	+
intron-3CDS	ENST00000489520	ENST00000338034		ChiTaRS3.1			BQ948076	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000395962		ChiTaRS3.1			BQ948076	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000426905		ChiTaRS3.1			BQ948076	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000609345		ChiTaRS3.1			BQ948076	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000578071		ChiTaRS3.1			BQ948076	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
In-frame	ENST00000435680	ENST00000429989		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000435680	ENST00000481124		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000435680	ENST00000372164		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000435680	ENST00000372158		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000435680	ENST00000341863		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000435680	ENST00000372156		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000435680	ENST00000265450		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
In-frame	ENST00000425768	ENST00000429989		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000425768	ENST00000481124		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000425768	ENST00000372164		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000425768	ENST00000372158		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000425768	ENST00000341863		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000425768	ENST00000372156		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000425768	ENST00000265450		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-3CDS	ENST00000314404	ENST00000429989		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-intron	ENST00000314404	ENST00000481124		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-intron	ENST00000314404	ENST00000372164		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-intron	ENST00000314404	ENST00000372158		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-intron	ENST00000314404	ENST00000341863		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-intron	ENST00000314404	ENST00000372156		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5UTR-intron	ENST00000314404	ENST00000265450		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
In-frame	ENST00000563714	ENST00000429989		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000563714	ENST00000481124		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000563714	ENST00000372164		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000563714	ENST00000372158		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000563714	ENST00000341863		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000563714	ENST00000372156		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
5CDS-intron	ENST00000563714	ENST00000265450		ChiTaRS3.1			BG389369	MTMR10	chr15	31266517	-	TSPAN14	chr10	82264482	+
intron-3CDS	ENST00000369026	ENST00000389266		ChiTaRS3.1			AI970290	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000464132	ENST00000389266		ChiTaRS3.1			AI970290	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-3CDS	ENST00000307940	ENST00000389266		ChiTaRS3.1			AI970290	MCL1	chr1	150551582	-	GARS	chr7	30671106	+
intron-5UTR	ENST00000455756	ENST00000373019		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000455756	ENST00000448721		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000455756	ENST00000489537		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-5UTR	ENST00000418177	ENST00000373019		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000418177	ENST00000448721		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000418177	ENST00000489537		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-5UTR	ENST00000305447	ENST00000373019		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000305447	ENST00000448721		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000305447	ENST00000489537		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-5UTR	ENST00000305432	ENST00000373019		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000305432	ENST00000448721		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000305432	ENST00000489537		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-5UTR	ENST00000393297	ENST00000373019		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000393297	ENST00000448721		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000393297	ENST00000489537		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-5UTR	ENST00000393294	ENST00000373019		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000393294	ENST00000448721		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
intron-intron	ENST00000393294	ENST00000489537		ChiTaRS3.1			DB175186	GRM5	chr11	88766472	-	SF3A3	chr1	38455694	-
5CDS-5UTR	ENST00000492622	ENST00000378720		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
5CDS-5UTR	ENST00000492622	ENST00000378697		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
5CDS-intron	ENST00000492622	ENST00000495654		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
5CDS-5UTR	ENST00000541916	ENST00000378720		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
5CDS-5UTR	ENST00000541916	ENST00000378697		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
5CDS-intron	ENST00000541916	ENST00000495654		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
intron-5UTR	ENST00000398316	ENST00000378720		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
intron-5UTR	ENST00000398316	ENST00000378697		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
intron-intron	ENST00000398316	ENST00000495654		ChiTaRS3.1			BI335248	FNDC3A	chr13	49580425	+	ESD	chr13	47367582	-
intron-3CDS	ENST00000541773	ENST00000265062		ChiTaRS3.1			BE764233	NID2	chr14	52505476	-	RAB7A	chr3	128532209	+
intron-3CDS	ENST00000541773	ENST00000482525		ChiTaRS3.1			BE764233	NID2	chr14	52505476	-	RAB7A	chr3	128532209	+
intron-3CDS	ENST00000541773	ENST00000485280		ChiTaRS3.1			BE764233	NID2	chr14	52505476	-	RAB7A	chr3	128532209	+
intron-3CDS	ENST00000216286	ENST00000265062		ChiTaRS3.1			BE764233	NID2	chr14	52505476	-	RAB7A	chr3	128532209	+
intron-3CDS	ENST00000216286	ENST00000482525		ChiTaRS3.1			BE764233	NID2	chr14	52505476	-	RAB7A	chr3	128532209	+
intron-3CDS	ENST00000216286	ENST00000485280		ChiTaRS3.1			BE764233	NID2	chr14	52505476	-	RAB7A	chr3	128532209	+
intron-3CDS	ENST00000348697	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000348697	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000348697	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
3UTR-3CDS	ENST00000402984	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
3UTR-3CDS	ENST00000402984	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
3UTR-3CDS	ENST00000402984	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
3UTR-3CDS	ENST00000262722	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
3UTR-3CDS	ENST00000262722	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
3UTR-3CDS	ENST00000262722	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000327858	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000327858	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000327858	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000442170	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000442170	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000442170	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000340923	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000340923	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000340923	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000476366	ENST00000248594		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000476366	ENST00000415482		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000476366	ENST00000435495		ChiTaRS3.1			BU753777	FBLN1	chr22	45959169	-	PTPN12	chr7	77256106	-
intron-3CDS	ENST00000371711	ENST00000230419		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
intron-3CDS	ENST00000371711	ENST00000349241		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
intron-3CDS	ENST00000371711	ENST00000345201		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
intron-3CDS	ENST00000371711	ENST00000352931		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
intron-3CDS	ENST00000371711	ENST00000481273		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
intron-intron	ENST00000371711	ENST00000476760		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
intron-intron	ENST00000371711	ENST00000471863		ChiTaRS3.1			BF812681	B4GALT5	chr20	48252621	-	PTK7	chr6	43113045	+
5CDS-intron	ENST00000320912	ENST00000297056		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000425398		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-5UTR	ENST00000320912	ENST00000436575		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000428902		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000421761		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000320912	ENST00000479922		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000297056		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000425398		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-5UTR	ENST00000507420	ENST00000436575		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000428902		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000421761		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000507420	ENST00000479922		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000297056		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000425398		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-5UTR	ENST00000382581	ENST00000436575		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000428902		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000421761		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5CDS-intron	ENST00000382581	ENST00000479922		ChiTaRS3.1			BF184327	MRFAP1	chr4	6642847	+	DAGLB	chr7	6523728	-
5UTR-5UTR	ENST00000002596	ENST00000409018		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-3UTR	ENST00000002596	ENST00000492815		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-5UTR	ENST00000002596	ENST00000409014		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-intron	ENST00000002596	ENST00000409675		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-5UTR	ENST00000002596	ENST00000409949		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-5UTR	ENST00000002596	ENST00000409242		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-5UTR	ENST00000002596	ENST00000312994		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
5UTR-intron	ENST00000002596	ENST00000449989		ChiTaRS3.1			DA418439	HS3ST1	chr4	11430323	-	EXD2	chr14	69676138	+
intron-3UTR	ENST00000244221	ENST00000305135		ChiTaRS3.1			H19903	PAIP2B	chr2	71412679	-	YEATS2	chr3	183529985	+
intron-3UTR	ENST00000376630	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-5UTR	ENST00000376630	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000376630	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000376630	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000376630	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000376630	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000376630	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000415649	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-5UTR	ENST00000415649	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000415649	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415649	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415649	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415649	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415649	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000415289	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-5UTR	ENST00000415289	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000415289	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415289	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415289	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415289	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000415289	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000444683	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-5UTR	ENST00000444683	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000444683	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000444683	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000444683	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000444683	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000444683	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000383597	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-5UTR	ENST00000383597	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000383597	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000383597	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000383597	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000383597	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000383597	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000425603	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-5UTR	ENST00000425603	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-3UTR	ENST00000425603	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000425603	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000425603	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000425603	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
intron-intron	ENST00000425603	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-3UTR	ENST00000427936	ENST00000309117		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-5UTR	ENST00000427936	ENST00000399000		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-3UTR	ENST00000427936	ENST00000288304		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-intron	ENST00000427936	ENST00000539844		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-intron	ENST00000427936	ENST00000399001		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-intron	ENST00000427936	ENST00000476950		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
3UTR-intron	ENST00000427936	ENST00000398998		ChiTaRS3.1			AW337803	HLA-E	chr6	1793295	-	DSCR3	chr21	38597247	+
5CDS-intron	ENST00000267101	ENST00000379933		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000267101	ENST00000379938		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000267101	ENST00000334984		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000267101	ENST00000349384		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-intron	ENST00000450146	ENST00000379933		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000450146	ENST00000379938		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000450146	ENST00000334984		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000450146	ENST00000349384		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-intron	ENST00000415288	ENST00000379933		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000415288	ENST00000379938		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000415288	ENST00000334984		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000415288	ENST00000349384		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-intron	ENST00000553131	ENST00000379933		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000553131	ENST00000379938		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000553131	ENST00000334984		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5CDS-3UTR	ENST00000553131	ENST00000349384		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
intron-intron	ENST00000411731	ENST00000379933		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
intron-3UTR	ENST00000411731	ENST00000379938		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
intron-3UTR	ENST00000411731	ENST00000334984		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
intron-3UTR	ENST00000411731	ENST00000349384		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5UTR-intron	ENST00000549832	ENST00000379933		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5UTR-3UTR	ENST00000549832	ENST00000379938		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5UTR-3UTR	ENST00000549832	ENST00000334984		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
5UTR-3UTR	ENST00000549832	ENST00000349384		ChiTaRS3.1			BP237824	ERBB3	chr12	56492330	+	RREB1	chr6	7250051	+
3UTR-3CDS	ENST00000534336	ENST00000229239		ChiTaRS3.1			BF815183	MALAT1	chr11	65268063	-	GAPDH	chr12	6646152	+
3UTR-3CDS	ENST00000534336	ENST00000396856		ChiTaRS3.1			BF815183	MALAT1	chr11	65268063	-	GAPDH	chr12	6646152	+
3UTR-3CDS	ENST00000534336	ENST00000396861		ChiTaRS3.1			BF815183	MALAT1	chr11	65268063	-	GAPDH	chr12	6646152	+
3UTR-3CDS	ENST00000534336	ENST00000396859		ChiTaRS3.1			BF815183	MALAT1	chr11	65268063	-	GAPDH	chr12	6646152	+
3UTR-3CDS	ENST00000534336	ENST00000396858		ChiTaRS3.1			BF815183	MALAT1	chr11	65268063	-	GAPDH	chr12	6646152	+
3UTR-3CDS	ENST00000339399	ENST00000368811		ChiTaRS3.1			BE122679	ANP32B	chr9	100777825	+	S100A10	chr1	151955777	-
3UTR-3CDS	ENST00000339399	ENST00000368809		ChiTaRS3.1			BE122679	ANP32B	chr9	100777825	+	S100A10	chr1	151955777	-
3UTR-5UTR	ENST00000339399	ENST00000478574		ChiTaRS3.1			BE122679	ANP32B	chr9	100777825	+	S100A10	chr1	151955777	-
intron-3CDS	ENST00000473205	ENST00000368811		ChiTaRS3.1			BE122679	ANP32B	chr9	100777825	+	S100A10	chr1	151955777	-
intron-3CDS	ENST00000473205	ENST00000368809		ChiTaRS3.1			BE122679	ANP32B	chr9	100777825	+	S100A10	chr1	151955777	-
intron-5UTR	ENST00000473205	ENST00000478574		ChiTaRS3.1			BE122679	ANP32B	chr9	100777825	+	S100A10	chr1	151955777	-
Frame-shit	ENST00000320583	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000320583	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000357864	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000357864	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000252713	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000252713	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000454654	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000454654	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000449244	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000449244	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000425063	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000425063	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000493277	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000493277	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000424881	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000424881	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000440391	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000440391	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
Frame-shit	ENST00000394163	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
5CDS-5UTR	ENST00000394163	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
intron-3CDS	ENST00000419215	ENST00000355451		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
intron-5UTR	ENST00000419215	ENST00000460110		ChiTaRS3.1			DA266922	ZNF655	chr7	99158320	+	NUDCD3	chr7	44444183	-
intron-intron	ENST00000394023	ENST00000418539		ChiTaRS3.1			BF376627	SMARCC2	chr12	56565518	-	BCYRN1	chrX	70460360	-
intron-intron	ENST00000550164	ENST00000418539		ChiTaRS3.1			BF376627	SMARCC2	chr12	56565518	-	BCYRN1	chrX	70460360	-
intron-intron	ENST00000347471	ENST00000418539		ChiTaRS3.1			BF376627	SMARCC2	chr12	56565518	-	BCYRN1	chrX	70460360	-
intron-intron	ENST00000267064	ENST00000418539		ChiTaRS3.1			BF376627	SMARCC2	chr12	56565518	-	BCYRN1	chrX	70460360	-
intron-intron	ENST00000550859	ENST00000418539		ChiTaRS3.1			BF376627	SMARCC2	chr12	56565518	-	BCYRN1	chrX	70460360	-
intron-3CDS	ENST00000481781	ENST00000322507		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000481781	ENST00000345356		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000481781	ENST00000416123		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000481781	ENST00000483888		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-intron	ENST00000481781	ENST00000511023		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000397270	ENST00000322507		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000397270	ENST00000345356		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000397270	ENST00000416123		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-3CDS	ENST00000397270	ENST00000483888		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
intron-intron	ENST00000397270	ENST00000511023		ChiTaRS3.1			BP376743	INS-IGF2	chr11	2154440	-	COL12A1	chr6	75912492	-
3UTR-5UTR	ENST00000474320	ENST00000242776		ChiTaRS3.1			BI827521	DNAJC15	chr13	43597870	+	DDX39A	chr19	14524037	-
3UTR-intron	ENST00000474320	ENST00000592927		ChiTaRS3.1			BI827521	DNAJC15	chr13	43597870	+	DDX39A	chr19	14524037	-
3UTR-intron	ENST00000474320	ENST00000454233		ChiTaRS3.1			BI827521	DNAJC15	chr13	43597870	+	DDX39A	chr19	14524037	-
5CDS-5UTR	ENST00000379221	ENST00000242776		ChiTaRS3.1			BI827521	DNAJC15	chr13	43597870	+	DDX39A	chr19	14524037	-
5CDS-intron	ENST00000379221	ENST00000592927		ChiTaRS3.1			BI827521	DNAJC15	chr13	43597870	+	DDX39A	chr19	14524037	-
5CDS-intron	ENST00000379221	ENST00000454233		ChiTaRS3.1			BI827521	DNAJC15	chr13	43597870	+	DDX39A	chr19	14524037	-
intron-3UTR	ENST00000361204	ENST00000498240		ChiTaRS3.1			CD691174	SREBF2	chr22	42204997	+	ZNF75A	chr16	3366912	+
intron-3UTR	ENST00000361204	ENST00000574298		ChiTaRS3.1			CD691174	SREBF2	chr22	42204997	+	ZNF75A	chr16	3366912	+
intron-3UTR	ENST00000491541	ENST00000498240		ChiTaRS3.1			CD691174	SREBF2	chr22	42204997	+	ZNF75A	chr16	3366912	+
intron-3UTR	ENST00000491541	ENST00000574298		ChiTaRS3.1			CD691174	SREBF2	chr22	42204997	+	ZNF75A	chr16	3366912	+
5UTR-3CDS	ENST00000395048	ENST00000427159		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-intron	ENST00000395048	ENST00000580295		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-3CDS	ENST00000379727	ENST00000427159		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-intron	ENST00000379727	ENST00000580295		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
intron-3CDS	ENST00000567032	ENST00000427159		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
intron-intron	ENST00000567032	ENST00000580295		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-3CDS	ENST00000395049	ENST00000427159		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-intron	ENST00000395049	ENST00000580295		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-3CDS	ENST00000564596	ENST00000427159		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
5UTR-intron	ENST00000564596	ENST00000580295		ChiTaRS3.1			DB145273	CYP1A1	chr15	75017787	-	FTSJ3	chr17	61897663	-
intron-5UTR	ENST00000333039	ENST00000336023		ChiTaRS3.1			CD621808	NPTXR	chr22	39215153	-	TUBA1B	chr12	49525129	-
intron-5UTR	ENST00000384756	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384756	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384756	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384756	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384756	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384756	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384756	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384756	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384756	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000364799	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000364799	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000364799	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000364799	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000364799	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000364799	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000364799	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000364799	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000364799	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384693	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384693	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384693	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384693	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384693	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384693	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384693	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384693	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384693	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000383926	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000383926	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000383926	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000383926	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000383926	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000383926	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000383926	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000383926	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000383926	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000516331	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000516331	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000516331	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000516331	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000516331	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000516331	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000516331	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000516331	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000516331	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384706	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384706	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384706	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384706	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384706	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384706	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384706	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384706	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384706	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-5UTR	ENST00000363981	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-5UTR	ENST00000363981	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-5UTR	ENST00000363981	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-intron	ENST00000363981	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-intron	ENST00000363981	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-intron	ENST00000363981	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-intron	ENST00000363981	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-intron	ENST00000363981	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
5CDS-intron	ENST00000363981	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384147	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384147	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000384147	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384147	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384147	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384147	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384147	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384147	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000384147	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000365607	ENST00000429277		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000365607	ENST00000352360		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-5UTR	ENST00000365607	ENST00000458213		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000365607	ENST00000263066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000365607	ENST00000361373		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000365607	ENST00000372066		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000365607	ENST00000372056		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000365607	ENST00000310944		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
intron-intron	ENST00000365607	ENST00000542786		ChiTaRS3.1			DB214565	SNHG1	chr11	62622485	-	LDB3	chr10	88428264	+
Frame-shit	ENST00000248594	ENST00000216281		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
Frame-shit	ENST00000248594	ENST00000334701		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
5CDS-intron	ENST00000248594	ENST00000441629		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
5CDS-intron	ENST00000248594	ENST00000558600		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
Frame-shit	ENST00000415482	ENST00000216281		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
Frame-shit	ENST00000415482	ENST00000334701		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
5CDS-intron	ENST00000415482	ENST00000441629		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
5CDS-intron	ENST00000415482	ENST00000558600		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
Frame-shit	ENST00000435495	ENST00000216281		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
Frame-shit	ENST00000435495	ENST00000334701		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
5CDS-intron	ENST00000435495	ENST00000441629		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
5CDS-intron	ENST00000435495	ENST00000558600		ChiTaRS3.1			CN395126	PTPN12	chr7	77256353	+	HSP90AA1	chr14	102552123	-
intron-5UTR	ENST00000285243	ENST00000358232		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000351393		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000442325		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000423854		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000350494		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-5UTR	ENST00000285243	ENST00000542824		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-intron	ENST00000285243	ENST00000542050		ChiTaRS3.1			AK022709	ANKRD40	chr17	48777998	-	ELP2	chr18	33709887	+
intron-3UTR	ENST00000466764	ENST00000334047		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
intron-3UTR	ENST00000466764	ENST00000370207		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
intron-intron	ENST00000466764	ENST00000480356		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-3UTR	ENST00000376759	ENST00000334047		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-3UTR	ENST00000376759	ENST00000370207		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-intron	ENST00000376759	ENST00000480356		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-3UTR	ENST00000430348	ENST00000334047		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-3UTR	ENST00000430348	ENST00000370207		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-intron	ENST00000430348	ENST00000480356		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
intron-3UTR	ENST00000376755	ENST00000334047		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
intron-3UTR	ENST00000376755	ENST00000370207		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
intron-intron	ENST00000376755	ENST00000480356		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-3UTR	ENST00000354480	ENST00000334047		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-3UTR	ENST00000354480	ENST00000370207		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
3UTR-intron	ENST00000354480	ENST00000480356		ChiTaRS3.1			BU676293	RBM3	chrX	48436439	-	F3	chr1	94995621	+
intron-3UTR	ENST00000418539	ENST00000472232		ChiTaRS3.1			BQ072717	BCYRN1	chrX	70753170	+	BAG1	chr9	33253886	-
intron-intron	ENST00000418539	ENST00000467389		ChiTaRS3.1			BQ072717	BCYRN1	chrX	70753170	+	BAG1	chr9	33253886	-
intron-intron	ENST00000418539	ENST00000379704		ChiTaRS3.1			BQ072717	BCYRN1	chrX	70753170	+	BAG1	chr9	33253886	-
intron-intron	ENST00000398465	ENST00000286301		ChiTaRS3.1			DA932555	VPREB3	chr22	24095267	-	CSF1R	chr5	149456704	-
intron-intron	ENST00000398465	ENST00000515239		ChiTaRS3.1			DA932555	VPREB3	chr22	24095267	-	CSF1R	chr5	149456704	-
intron-intron	ENST00000398465	ENST00000543093		ChiTaRS3.1			DA932555	VPREB3	chr22	24095267	-	CSF1R	chr5	149456704	-
intron-intron	ENST00000248948	ENST00000286301		ChiTaRS3.1			DA932555	VPREB3	chr22	24095267	-	CSF1R	chr5	149456704	-
intron-intron	ENST00000248948	ENST00000515239		ChiTaRS3.1			DA932555	VPREB3	chr22	24095267	-	CSF1R	chr5	149456704	-
intron-intron	ENST00000248948	ENST00000543093		ChiTaRS3.1			DA932555	VPREB3	chr22	24095267	-	CSF1R	chr5	149456704	-
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BQ881771	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BQ881771	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000280379	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000280379	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
In-frame	ENST00000393632	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000393632	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
In-frame	ENST00000393630	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000393630	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
In-frame	ENST00000546600	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000546600	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
In-frame	ENST00000552738	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000552738	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
In-frame	ENST00000393629	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000393629	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
In-frame	ENST00000552115	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
5CDS-intron	ENST00000552115	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
intron-3CDS	ENST00000549378	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
intron-intron	ENST00000549378	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
intron-3CDS	ENST00000551397	ENST00000378961		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
intron-intron	ENST00000551397	ENST00000488832		ChiTaRS3.1			BC042679	MON2	chr12	62926331	+	CHGB	chr20	5904344	+
intron-3UTR	ENST00000379565	ENST00000263238		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000379565	ENST00000536059		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000379565	ENST00000535589		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-3UTR	ENST00000544447	ENST00000263238		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000544447	ENST00000536059		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000544447	ENST00000535589		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-3UTR	ENST00000379548	ENST00000263238		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000379548	ENST00000536059		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000379548	ENST00000535589		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-3UTR	ENST00000540702	ENST00000263238		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000540702	ENST00000536059		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000540702	ENST00000535589		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-3UTR	ENST00000479809	ENST00000263238		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000479809	ENST00000536059		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-intron	ENST00000479809	ENST00000535589		ChiTaRS3.1			CA843526	RPS6KA3	chrX	20171470	-	ACTR3	chr2	114715521	+
intron-3CDS	ENST00000598884	ENST00000591462		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000598884	ENST00000252455		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000598884	ENST00000412601		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000598884	ENST00000592741		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000598884	ENST00000587327		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000598884	ENST00000589838		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-intron	ENST00000598884	ENST00000591510		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000301457	ENST00000591462		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000301457	ENST00000252455		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000301457	ENST00000412601		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000301457	ENST00000592741		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000301457	ENST00000587327		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-3CDS	ENST00000301457	ENST00000589838		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
intron-intron	ENST00000301457	ENST00000591510		ChiTaRS3.1			CN412416	NDUFA7	chr19	8381403	-	PRKCSH	chr19	11556248	+
3UTR-3UTR	ENST00000309366	ENST00000345136		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000357649		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000354589		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000398774		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000322810		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000354958		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000356346		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000436759		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-intron	ENST00000309366	ENST00000527096		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000345136		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000357649		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000354589		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000398774		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000322810		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000354958		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000356346		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000436759		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-intron	ENST00000449942	ENST00000527096		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000345136		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000357649		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000354589		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000398774		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000322810		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000354958		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000356346		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000436759		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-intron	ENST00000394540	ENST00000527096		ChiTaRS3.1			CA306251	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
5CDS-3UTR	ENST00000313269	ENST00000601048		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-3UTR	ENST00000313269	ENST00000509570		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-intron	ENST00000313269	ENST00000593892		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-3UTR	ENST00000313269	ENST00000601419		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-intron	ENST00000313269	ENST00000595615		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-3UTR	ENST00000395068	ENST00000601048		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-3UTR	ENST00000395068	ENST00000509570		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-intron	ENST00000395068	ENST00000593892		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-3UTR	ENST00000395068	ENST00000601419		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-intron	ENST00000395068	ENST00000595615		ChiTaRS3.1			BF945184	GRINA	chr8	145065925	+	SEPW1	chr19	48287626	+
5CDS-3UTR	ENST00000311528	ENST00000534336		ChiTaRS3.1			AA063629	RPL13	chr16	89629402	-	MALAT1	chr11	65268002	-
5CDS-3UTR	ENST00000567815	ENST00000534336		ChiTaRS3.1			AA063629	RPL13	chr16	89629402	-	MALAT1	chr11	65268002	-
5CDS-3UTR	ENST00000452368	ENST00000534336		ChiTaRS3.1			AA063629	RPL13	chr16	89629402	-	MALAT1	chr11	65268002	-
5CDS-3UTR	ENST00000393099	ENST00000534336		ChiTaRS3.1			AA063629	RPL13	chr16	89629402	-	MALAT1	chr11	65268002	-
Frame-shit	ENST00000311275	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000311275	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000311275	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000311275	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000360911	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000360911	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000360911	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000360911	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000458360	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000458360	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000458360	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000458360	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
In-frame	ENST00000262975	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000262975	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000262975	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000262975	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000471951	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000471951	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000471951	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000471951	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000352431	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000352431	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000352431	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000352431	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000396281	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000396281	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000396281	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000396281	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
In-frame	ENST00000446994	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000446994	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000446994	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000446994	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000536340	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000536340	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000536340	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000536340	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
In-frame	ENST00000355972	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000355972	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000355972	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000355972	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000540497	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000540497	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000540497	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000540497	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000461685	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000461685	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000461685	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000461685	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
Frame-shit	ENST00000372023	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000372023	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000372023	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
5CDS-intron	ENST00000372023	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
intron-3CDS	ENST00000468376	ENST00000397527		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
intron-intron	ENST00000468376	ENST00000342580		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
intron-intron	ENST00000468376	ENST00000476146		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
intron-intron	ENST00000468376	ENST00000397524		ChiTaRS3.1			XX000006	ZMYND8	chr20	45852969	-	CEP250	chr20	34078460	+
3UTR-5UTR	ENST00000297273	ENST00000550487		ChiTaRS3.1			BP367852	CASD1	chr7	94185399	+	COX14	chr12	50505981	+
3UTR-5UTR	ENST00000297273	ENST00000317943		ChiTaRS3.1			BP367852	CASD1	chr7	94185399	+	COX14	chr12	50505981	+
3UTR-5UTR	ENST00000297273	ENST00000550654		ChiTaRS3.1			BP367852	CASD1	chr7	94185399	+	COX14	chr12	50505981	+
3UTR-intron	ENST00000297273	ENST00000548985		ChiTaRS3.1			BP367852	CASD1	chr7	94185399	+	COX14	chr12	50505981	+
Frame-shit	ENST00000296015	ENST00000535784		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000296015	ENST00000423462		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000296015	ENST00000378000		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000296015	ENST00000298942		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000296015	ENST00000485788		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-3CDS	ENST00000412756	ENST00000535784		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000412756	ENST00000423462		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000412756	ENST00000378000		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000412756	ENST00000298942		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000412756	ENST00000485788		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
Frame-shit	ENST00000382584	ENST00000535784		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000382584	ENST00000423462		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000382584	ENST00000378000		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000382584	ENST00000298942		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
5CDS-intron	ENST00000382584	ENST00000485788		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-3CDS	ENST00000465625	ENST00000535784		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000465625	ENST00000423462		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000465625	ENST00000378000		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000465625	ENST00000298942		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
3UTR-intron	ENST00000465625	ENST00000485788		ChiTaRS3.1			AK074095	TTC14	chr3	180327792	+	PTER	chr10	16547017	+
intron-intron	ENST00000583129	ENST00000409170		ChiTaRS3.1			T06265	MIR548O2	chr8	29927187	-	RPL36A-HNRNPH2	chrX	100663250	+
intron-intron	ENST00000298480	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000298480	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000487664	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000487664	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000371757	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000371757	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000486577	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000486577	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000491806	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000491806	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000488444	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000488444	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000490355	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000490355	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-intron	ENST00000263604	ENST00000437232		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
intron-5UTR	ENST00000263604	ENST00000605833		ChiTaRS3.1			DA914166	KCNT1	chr9	138606305	+	VIM-AS1	chr10	17271414	+
5CDS-3UTR	ENST00000373580	ENST00000251527		ChiTaRS3.1			AA902521	OLFML2A	chr9	127549517	+	ESYT2	chr7	158524049	-
5CDS-intron	ENST00000373580	ENST00000497111		ChiTaRS3.1			AA902521	OLFML2A	chr9	127549517	+	ESYT2	chr7	158524049	-
5CDS-intron	ENST00000373580	ENST00000435514		ChiTaRS3.1			AA902521	OLFML2A	chr9	127549517	+	ESYT2	chr7	158524049	-
intron-3UTR	ENST00000288815	ENST00000251527		ChiTaRS3.1			AA902521	OLFML2A	chr9	127549517	+	ESYT2	chr7	158524049	-
intron-intron	ENST00000288815	ENST00000497111		ChiTaRS3.1			AA902521	OLFML2A	chr9	127549517	+	ESYT2	chr7	158524049	-
intron-intron	ENST00000288815	ENST00000435514		ChiTaRS3.1			AA902521	OLFML2A	chr9	127549517	+	ESYT2	chr7	158524049	-
3UTR-3CDS	ENST00000445403	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3CDS	ENST00000373578	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3CDS	ENST00000360723	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3CDS	ENST00000358208	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3CDS	ENST00000373567	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3CDS	ENST00000373558	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3CDS	ENST00000477066	ENST00000373237		ChiTaRS3.1			BE908471	SRC	chr20	36031973	+	PSMB2	chr1	36070873	-
3UTR-3UTR	ENST00000313334	ENST00000594797		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
3UTR-3UTR	ENST00000313334	ENST00000456958		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
3UTR-intron	ENST00000313334	ENST00000601406		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3UTR	ENST00000489308	ENST00000594797		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3UTR	ENST00000489308	ENST00000456958		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-intron	ENST00000489308	ENST00000601406		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
3UTR-3UTR	ENST00000472944	ENST00000594797		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
3UTR-3UTR	ENST00000472944	ENST00000456958		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
3UTR-intron	ENST00000472944	ENST00000601406		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3UTR	ENST00000484036	ENST00000594797		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3UTR	ENST00000484036	ENST00000456958		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-intron	ENST00000484036	ENST00000601406		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3UTR	ENST00000533836	ENST00000594797		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3UTR	ENST00000533836	ENST00000456958		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-intron	ENST00000533836	ENST00000601406		ChiTaRS3.1			BC022371	BTF3L4	chr1	52553821	+	PET100	chr19	7696459	+
intron-3CDS	ENST00000263634	ENST00000215793		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000263634	ENST00000439242		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000215793		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000439242		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000215793		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000439242		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000215793		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000439242		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000215793		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000439242		ChiTaRS3.1			AW193659	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
3UTR-3UTR	ENST00000372842	ENST00000162749		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-intron	ENST00000372842	ENST00000540022		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-intron	ENST00000372842	ENST00000366159		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-intron	ENST00000372842	ENST00000437813		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-3UTR	ENST00000372838	ENST00000162749		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-intron	ENST00000372838	ENST00000540022		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-intron	ENST00000372838	ENST00000366159		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-intron	ENST00000372838	ENST00000437813		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
intron-3UTR	ENST00000493788	ENST00000162749		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
intron-intron	ENST00000493788	ENST00000540022		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
intron-intron	ENST00000493788	ENST00000366159		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
intron-intron	ENST00000493788	ENST00000437813		ChiTaRS3.1			W02761	CERCAM	chr9	131199568	-	TNFRSF1A	chr12	6437964	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			BE813514	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
5CDS-intron	ENST00000409508	ENST00000537344		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000409508	ENST00000256194		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000409508	ENST00000527546		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000409508	ENST00000342902		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000409508	ENST00000379612		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000409508	ENST00000527195		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000328843	ENST00000537344		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000328843	ENST00000256194		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000328843	ENST00000527546		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000328843	ENST00000342902		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000328843	ENST00000379612		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
5CDS-intron	ENST00000328843	ENST00000527195		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000465593	ENST00000537344		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000465593	ENST00000256194		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000465593	ENST00000527546		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000465593	ENST00000342902		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000465593	ENST00000379612		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000465593	ENST00000527195		ChiTaRS3.1			AW664742	DNAH11	chr7	21940717	+	MICAL2	chr11	12238868	-
intron-intron	ENST00000369016	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369016	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369016	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369014	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369014	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369014	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369009	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369009	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000369009	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000339643	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000339643	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000339643	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000271690	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000271690	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000271690	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000356527	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000356527	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000356527	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000503345	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000503345	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000503345	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000503241	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000503241	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000503241	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000362052	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000362052	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000362052	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000361532	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000361532	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000361532	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000361631	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000361631	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000361631	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000513281	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000513281	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000513281	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000354702	ENST00000376542		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000354702	ENST00000339157		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
intron-intron	ENST00000354702	ENST00000481556		ChiTaRS3.1			BQ637635	ENSA	chr1	150599981	-	ABHD12	chr20	25281500	-
5CDS-3UTR	ENST00000392951	ENST00000369445		ChiTaRS3.1			AW800830	TAGLN	chr11	117073899	+	F8A3	chrX	154686957	-
5CDS-3UTR	ENST00000530649	ENST00000369445		ChiTaRS3.1			AW800830	TAGLN	chr11	117073899	+	F8A3	chrX	154686957	-
5CDS-3UTR	ENST00000532870	ENST00000369445		ChiTaRS3.1			AW800830	TAGLN	chr11	117073899	+	F8A3	chrX	154686957	-
intron-intron	ENST00000509990	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000509990	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000509990	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000361059	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000361059	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000361059	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000504203	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000504203	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000504203	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502929	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502929	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502929	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394800	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394800	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394800	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000507197	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000507197	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000507197	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394805	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394805	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394805	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502499	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502499	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502499	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000510056	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000510056	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000510056	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000503811	ENST00000332981		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000503811	ENST00000555082		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000503811	ENST00000556245		ChiTaRS3.1			CV382562	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
In-frame	ENST00000547776	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000547776	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000329257	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000329257	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000547010	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000547010	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-3CDS	ENST00000341752	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-intron	ENST00000341752	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000549558	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000549558	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000550693	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000550693	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
Frame-shit	ENST00000549025	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000549025	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000549493	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000549493	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000547446	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000547446	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-3CDS	ENST00000333732	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-intron	ENST00000333732	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000546568	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000546568	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000332712	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000332712	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
In-frame	ENST00000546960	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
5CDS-intron	ENST00000546960	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-3CDS	ENST00000550833	ENST00000008527		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-intron	ENST00000550833	ENST00000550633		ChiTaRS3.1			AK131279	ANKS1B	chr12	99446934	-	CRY1	chr12	107399026	-
intron-intron	ENST00000376630	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000376630	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000376630	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000376630	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000376630	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000376630	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000376630	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415649	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000415649	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000415649	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415649	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415649	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000415649	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415649	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415289	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000415289	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000415289	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415289	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415289	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000415289	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000415289	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000444683	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000444683	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000444683	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000444683	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000444683	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000444683	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000444683	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000383597	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000383597	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000383597	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000383597	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000383597	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000383597	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000383597	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000425603	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000425603	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000425603	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000425603	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000425603	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3UTR	ENST00000425603	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-intron	ENST00000425603	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-intron	ENST00000427936	ENST00000545334		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-3UTR	ENST00000427936	ENST00000537927		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-3UTR	ENST00000427936	ENST00000318304		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-intron	ENST00000427936	ENST00000535047		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-intron	ENST00000427936	ENST00000542629		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-3UTR	ENST00000427936	ENST00000228425		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
3UTR-intron	ENST00000427936	ENST00000541633		ChiTaRS3.1			BM559993	HLA-E	chr6	1793080	+	PPFIBP1	chr12	27848319	+
intron-3CDS	ENST00000286122	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000286122	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000355163	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000355163	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000479780	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000479780	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000393208	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000393208	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000355022	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000355022	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000538234	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000538234	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000393207	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
intron-3CDS	ENST00000393207	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
3UTR-3CDS	ENST00000481948	ENST00000541773		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
3UTR-3CDS	ENST00000481948	ENST00000216286		ChiTaRS3.1			DB118469	BANP	chr16	88105027	+	NID2	chr14	52481996	-
In-frame	ENST00000436648	ENST00000300087		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000436648	ENST00000563998		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000436648	ENST00000568589		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000436648	ENST00000568272		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000321919	ENST00000300087		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000321919	ENST00000563998		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000321919	ENST00000568589		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000321919	ENST00000568272		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000381983	ENST00000300087		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000381983	ENST00000563998		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000381983	ENST00000568589		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000381983	ENST00000568272		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000591451	ENST00000300087		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000591451	ENST00000563998		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000591451	ENST00000568589		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000591451	ENST00000568272		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
intron-3CDS	ENST00000586901	ENST00000300087		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
intron-3CDS	ENST00000586901	ENST00000563998		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
intron-3CDS	ENST00000586901	ENST00000568589		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
intron-3CDS	ENST00000586901	ENST00000568272		ChiTaRS3.1			BI832490	GLYR1	chr16	4872875	-	DCTN5	chr16	23654274	+
In-frame	ENST00000464356	ENST00000336761		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000464356	ENST00000233078		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
5CDS-intron	ENST00000464356	ENST00000586579		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000348159	ENST00000336761		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000348159	ENST00000233078		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
5CDS-intron	ENST00000348159	ENST00000586579		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000353795	ENST00000336761		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000353795	ENST00000233078		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
5CDS-intron	ENST00000353795	ENST00000586579		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000340875	ENST00000336761		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000340875	ENST00000233078		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
5CDS-intron	ENST00000340875	ENST00000586579		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000368240	ENST00000336761		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
In-frame	ENST00000368240	ENST00000233078		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
5CDS-intron	ENST00000368240	ENST00000586579		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
Frame-shit	ENST00000360595	ENST00000336761		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
Frame-shit	ENST00000360595	ENST00000233078		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
5CDS-intron	ENST00000360595	ENST00000586579		ChiTaRS3.1			AY675556	MEF2D	chr1	156449080	-	DAZAP1	chr19	1425876	+
Frame-shit	ENST00000579226	ENST00000324366		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000579226	ENST00000397441		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000579226	ENST00000397440		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000579226	ENST00000216350		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000579226	ENST00000538452		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000579226	ENST00000553897		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-5UTR	ENST00000579226	ENST00000553641		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000217652	ENST00000324366		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000217652	ENST00000397441		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000217652	ENST00000397440		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000217652	ENST00000216350		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000217652	ENST00000538452		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000217652	ENST00000553897		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-5UTR	ENST00000217652	ENST00000553641		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000578611	ENST00000324366		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000578611	ENST00000397441		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000578611	ENST00000397440		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000578611	ENST00000216350		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000578611	ENST00000538452		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000578611	ENST00000553897		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-5UTR	ENST00000578611	ENST00000553641		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-3CDS	ENST00000585090	ENST00000324366		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-3CDS	ENST00000585090	ENST00000397441		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-intron	ENST00000585090	ENST00000397440		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-intron	ENST00000585090	ENST00000216350		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-intron	ENST00000585090	ENST00000538452		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-intron	ENST00000585090	ENST00000553897		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-5UTR	ENST00000585090	ENST00000553641		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000580887	ENST00000324366		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000580887	ENST00000397441		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000580887	ENST00000397440		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000580887	ENST00000216350		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000580887	ENST00000538452		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000580887	ENST00000553897		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-5UTR	ENST00000580887	ENST00000553641		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000536605	ENST00000324366		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
Frame-shit	ENST00000536605	ENST00000397441		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000536605	ENST00000397440		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000536605	ENST00000216350		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000536605	ENST00000538452		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-intron	ENST00000536605	ENST00000553897		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
5CDS-5UTR	ENST00000536605	ENST00000553641		ChiTaRS3.1			CD696469	MYL12A	chr18	3253269	+	PRMT5	chr14	23395990	-
intron-intron	ENST00000553221	ENST00000227349		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
intron-intron	ENST00000553221	ENST00000531316		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
intron-3UTR	ENST00000553221	ENST00000307257		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
3UTR-intron	ENST00000257910	ENST00000227349		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
3UTR-intron	ENST00000257910	ENST00000531316		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
3UTR-3UTR	ENST00000257910	ENST00000307257		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
3UTR-intron	ENST00000547992	ENST00000227349		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
3UTR-intron	ENST00000547992	ENST00000531316		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
3UTR-3UTR	ENST00000547992	ENST00000307257		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
intron-intron	ENST00000547472	ENST00000227349		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
intron-intron	ENST00000547472	ENST00000531316		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
intron-3UTR	ENST00000547472	ENST00000307257		ChiTaRS3.1			BU634124	TSPAN31	chr12	58141792	-	C11orf63	chr11	122776300	-
intron-3CDS	ENST00000330978	ENST00000545074		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
intron-intron	ENST00000330978	ENST00000540249		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
intron-intron	ENST00000330978	ENST00000379806		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
intron-intron	ENST00000330978	ENST00000422285		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
intron-intron	ENST00000330978	ENST00000379805		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
intron-intron	ENST00000330978	ENST00000379804		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
intron-intron	ENST00000330978	ENST00000478795		ChiTaRS3.1			BF694498	BOLA2	chr16	30078604	+	PDHA1	chrX	19372612	+
5UTR-3CDS	ENST00000526995	ENST00000346178		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-3CDS	ENST00000526995	ENST00000356638		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-intron	ENST00000526995	ENST00000534779		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-5UTR	ENST00000526995	ENST00000540933		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-intron	ENST00000526995	ENST00000534422		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-3CDS	ENST00000348124	ENST00000346178		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-3CDS	ENST00000348124	ENST00000356638		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-intron	ENST00000348124	ENST00000534779		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-5UTR	ENST00000348124	ENST00000540933		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
5UTR-intron	ENST00000348124	ENST00000534422		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
intron-3CDS	ENST00000529150	ENST00000346178		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
intron-3CDS	ENST00000529150	ENST00000356638		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
intron-intron	ENST00000529150	ENST00000534779		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
intron-5UTR	ENST00000529150	ENST00000540933		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
intron-intron	ENST00000529150	ENST00000534422		ChiTaRS3.1			DB067719	TRAF6	chr11	36531596	-	GANAB	chr11	62407204	-
intron-3UTR	ENST00000418536	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000418536	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000418536	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-3UTR	ENST00000448689	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000448689	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000448689	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-3UTR	ENST00000396321	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000396321	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000396321	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000396331	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000396331	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000396331	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000396327	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000396327	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000396327	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000434867	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000434867	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000434867	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000324602	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000324602	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000324602	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000396332	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000396332	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000396332	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000427581	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000427581	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000427581	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-3UTR	ENST00000396317	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000396317	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000396317	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-3UTR	ENST00000396315	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000396315	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-intron	ENST00000396315	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-3UTR	ENST00000462628	ENST00000261267		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000462628	ENST00000549690		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
3UTR-intron	ENST00000462628	ENST00000548839		ChiTaRS3.1			AF004230	LILRB1	chr19	55148628	+	LYZ	chr12	69747550	+
intron-3CDS	ENST00000540482	ENST00000455089		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000342916		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000344576		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000420316		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000275493		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000442591		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000463948		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000540482	ENST00000454757		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-3CDS	ENST00000275729	ENST00000455089		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000342916		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000344576		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000420316		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000275493		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000442591		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000463948		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000275729	ENST00000454757		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-3CDS	ENST00000428758	ENST00000455089		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000342916		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000344576		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000420316		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000275493		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000442591		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000463948		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000428758	ENST00000454757		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-3CDS	ENST00000415287	ENST00000455089		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000342916		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000344576		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000420316		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000275493		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000442591		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000463948		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000415287	ENST00000454757		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
In-frame	ENST00000354161	ENST00000455089		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000342916		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000344576		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000420316		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000275493		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000442591		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000463948		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
5CDS-intron	ENST00000354161	ENST00000454757		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-3CDS	ENST00000475623	ENST00000455089		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000342916		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000344576		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000420316		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000275493		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000442591		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000463948		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-intron	ENST00000475623	ENST00000454757		ChiTaRS3.1			BF736842	SLC12A9	chr7	100463764	+	EGFR	chr7	55270275	+
intron-5UTR	ENST00000466773	ENST00000330817		ChiTaRS3.1			AF311904	SLAMF9	chr1	159923932	-	ALG12	chr22	50312079	-
intron-5UTR	ENST00000368092	ENST00000330817		ChiTaRS3.1			AF311904	SLAMF9	chr1	159923932	-	ALG12	chr22	50312079	-
intron-5UTR	ENST00000368093	ENST00000330817		ChiTaRS3.1			AF311904	SLAMF9	chr1	159923932	-	ALG12	chr22	50312079	-
intron-3CDS	ENST00000536668	ENST00000373566		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000536668	ENST00000373563		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000536668	ENST00000409480		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000536668	ENST00000409547		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000536668	ENST00000409196		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000536668	ENST00000409451		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000536668	ENST00000482666		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000536668	ENST00000452341		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000544994	ENST00000373566		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000544994	ENST00000373563		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000544994	ENST00000409480		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000544994	ENST00000409547		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000544994	ENST00000409196		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000544994	ENST00000409451		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000544994	ENST00000482666		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000544994	ENST00000452341		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000228811	ENST00000373566		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000228811	ENST00000373563		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000228811	ENST00000409480		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000228811	ENST00000409547		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000228811	ENST00000409196		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000228811	ENST00000409451		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000228811	ENST00000482666		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000228811	ENST00000452341		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000540107	ENST00000373566		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000540107	ENST00000373563		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000540107	ENST00000409480		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000540107	ENST00000409547		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000540107	ENST00000409196		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000540107	ENST00000409451		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000540107	ENST00000482666		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-intron	ENST00000540107	ENST00000452341		ChiTaRS3.1			DB219937	PRR4	chr12	10999806	-	GIGYF2	chr2	233659590	+
intron-3CDS	ENST00000373583	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373583	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373583	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373583	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373573	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373573	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373573	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373573	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373589	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373589	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373589	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373589	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000429103	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000429103	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000429103	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000429103	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373571	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373571	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373571	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373571	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000439122	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000439122	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000439122	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000439122	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373560	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373560	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373560	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373560	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373559	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373559	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373559	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373559	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373561	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373561	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373561	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373561	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000478743	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000478743	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000478743	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000478743	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373556	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373556	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373556	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373556	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373554	ENST00000367993		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373554	ENST00000392179		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000373554	ENST00000476409		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3UTR	ENST00000373554	ENST00000465923		ChiTaRS3.1			BG979781	HDAC8	chrX	71694217	-	NDUFS2	chr1	161179681	+
intron-3CDS	ENST00000541730	ENST00000274242		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-intron	ENST00000541730	ENST00000509877		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-5UTR	ENST00000541730	ENST00000504562		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-5UTR	ENST00000541730	ENST00000508493		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-3CDS	ENST00000324607	ENST00000274242		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-intron	ENST00000324607	ENST00000509877		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-5UTR	ENST00000324607	ENST00000504562		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-5UTR	ENST00000324607	ENST00000508493		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-3CDS	ENST00000536798	ENST00000274242		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-intron	ENST00000536798	ENST00000509877		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-5UTR	ENST00000536798	ENST00000504562		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-5UTR	ENST00000536798	ENST00000508493		ChiTaRS3.1			AJ705329	MBOAT1	chr6	20124933	-	RPL37	chr5	40834357	-
intron-intron	ENST00000257290	ENST00000505731		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000257290	ENST00000507999		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000257290	ENST00000512712		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000257290	ENST00000515194		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000257290	ENST00000503709		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000257290	ENST00000507702		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000257290	ENST00000512802		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000505731		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000507999		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000512712		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000515194		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000503709		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000507702		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
intron-intron	ENST00000508170	ENST00000512802		ChiTaRS3.1			BE000201	PDGFRA	chr4	54386772	-	NOP14-AS1	chr4	2939912	-
Frame-shit	ENST00000328908	ENST00000328908		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000328908	ENST00000397588		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000328908	ENST00000472453		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000449732		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000343762		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000328908		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000397588		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000397588	ENST00000472453		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000449732		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000343762		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000328908		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000397588		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-intron	ENST00000472453	ENST00000472453		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000449732		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000343762		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000328908		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000397588		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000449732	ENST00000472453		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000449732		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000343762		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000328908		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000397588		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000343762	ENST00000472453		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000449732		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000343762		ChiTaRS3.1			BF380091	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3UTR	ENST00000268483	ENST00000374855		ChiTaRS3.1			BC005314	TXNL4B	chr16	72090495	+	ALDOB	chr9	104184069	-
intron-intron	ENST00000268483	ENST00000468981		ChiTaRS3.1			BC005314	TXNL4B	chr16	72090495	+	ALDOB	chr9	104184069	-
intron-3UTR	ENST00000423037	ENST00000374855		ChiTaRS3.1			BC005314	TXNL4B	chr16	72090495	+	ALDOB	chr9	104184069	-
intron-intron	ENST00000423037	ENST00000468981		ChiTaRS3.1			BC005314	TXNL4B	chr16	72090495	+	ALDOB	chr9	104184069	-
intron-3UTR	ENST00000426362	ENST00000374855		ChiTaRS3.1			BC005314	TXNL4B	chr16	72090495	+	ALDOB	chr9	104184069	-
intron-intron	ENST00000426362	ENST00000468981		ChiTaRS3.1			BC005314	TXNL4B	chr16	72090495	+	ALDOB	chr9	104184069	-
intron-3CDS	ENST00000413021	ENST00000295974		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000413021	ENST00000513140		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000413021	ENST00000508593		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000413021	ENST00000506352		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000413021	ENST00000511572		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000413021	ENST00000543538		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000413021	ENST00000502841		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000413021	ENST00000504305		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-3CDS	ENST00000219345	ENST00000295974		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-3CDS	ENST00000219345	ENST00000513140		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-3CDS	ENST00000219345	ENST00000508593		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-3CDS	ENST00000219345	ENST00000506352		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-intron	ENST00000219345	ENST00000511572		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-intron	ENST00000219345	ENST00000543538		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-intron	ENST00000219345	ENST00000502841		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
3UTR-intron	ENST00000219345	ENST00000504305		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000566188	ENST00000295974		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000566188	ENST00000513140		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000566188	ENST00000508593		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000566188	ENST00000506352		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000566188	ENST00000511572		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000566188	ENST00000543538		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000566188	ENST00000502841		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000566188	ENST00000504305		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000444212	ENST00000295974		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000444212	ENST00000513140		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000444212	ENST00000508593		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000444212	ENST00000506352		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000444212	ENST00000511572		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000444212	ENST00000543538		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000444212	ENST00000502841		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000444212	ENST00000504305		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000568599	ENST00000295974		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000568599	ENST00000513140		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000568599	ENST00000508593		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-3CDS	ENST00000568599	ENST00000506352		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000568599	ENST00000511572		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000568599	ENST00000543538		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000568599	ENST00000502841		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
intron-intron	ENST00000568599	ENST00000504305		ChiTaRS3.1			BQ000365	PLA2G15	chr16	68294707	-	APBB2	chr4	41015813	+
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM770178	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM770178	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM770178	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM770178	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000258198	ENST00000369522		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000258198	ENST00000369518		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3UTR	ENST00000258198	ENST00000477590		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000379482	ENST00000369522		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000379482	ENST00000369518		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3UTR	ENST00000379482	ENST00000477590		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000443351	ENST00000369522		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000443351	ENST00000369518		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3UTR	ENST00000443351	ENST00000477590		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000570201	ENST00000369522		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000570201	ENST00000369518		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3UTR	ENST00000570201	ENST00000477590		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000440564	ENST00000369522		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3CDS	ENST00000440564	ENST00000369518		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-3UTR	ENST00000440564	ENST00000477590		ChiTaRS3.1			AW393520	DYNC1LI2	chr16	66755832	-	SYCP1	chr1	115520197	+
intron-intron	ENST00000393829	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000393829	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000393829	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000393829	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000546249	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000546249	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000546249	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000537728	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000537728	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000537728	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000264649	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000264649	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000264649	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-intron	ENST00000585525	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000585525	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-3UTR	ENST00000585525	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000343619	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000343619	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000343619	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000544137	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000544137	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000544137	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000376377		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000259874		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000416336		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000439190		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000429592		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000416884		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000400509		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000383560		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000436988		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-intron	ENST00000587797	ENST00000450236		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000587797	ENST00000446599		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
3UTR-3UTR	ENST00000587797	ENST00000435856		ChiTaRS3.1			CB148173	ATP6V0A1	chr17	40673667	+	IER3	chr6	2044138	-
intron-5UTR	ENST00000317147	ENST00000359651		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000317147	ENST00000367284		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000317147	ENST00000367283		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-3UTR	ENST00000317147	ENST00000495848		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000569240	ENST00000359651		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000569240	ENST00000367284		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000569240	ENST00000367283		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-3UTR	ENST00000569240	ENST00000495848		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000441024	ENST00000359651		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000441024	ENST00000367284		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000441024	ENST00000367283		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-3UTR	ENST00000441024	ENST00000495848		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000569732	ENST00000359651		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000569732	ENST00000367284		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000569732	ENST00000367283		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-3UTR	ENST00000569732	ENST00000495848		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000245138	ENST00000359651		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000245138	ENST00000367284		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-5UTR	ENST00000245138	ENST00000367283		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
intron-3UTR	ENST00000245138	ENST00000495848		ChiTaRS3.1			DA433989	CNOT1	chr16	58593700	-	ELF3	chr1	201979752	+
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			S78158	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
3UTR-3CDS	ENST00000553116	ENST00000301740		ChiTaRS3.1			BQ331944	RAB5B	chr12	56387915	+	SRRM2	chr16	2819192	+
3UTR-3UTR	ENST00000553116	ENST00000574593		ChiTaRS3.1			BQ331944	RAB5B	chr12	56387915	+	SRRM2	chr16	2819192	+
3UTR-3CDS	ENST00000360299	ENST00000301740		ChiTaRS3.1			BQ331944	RAB5B	chr12	56387915	+	SRRM2	chr16	2819192	+
3UTR-3UTR	ENST00000360299	ENST00000574593		ChiTaRS3.1			BQ331944	RAB5B	chr12	56387915	+	SRRM2	chr16	2819192	+
intron-3CDS	ENST00000448789	ENST00000301740		ChiTaRS3.1			BQ331944	RAB5B	chr12	56387915	+	SRRM2	chr16	2819192	+
intron-3UTR	ENST00000448789	ENST00000574593		ChiTaRS3.1			BQ331944	RAB5B	chr12	56387915	+	SRRM2	chr16	2819192	+
intron-3UTR	ENST00000374586	ENST00000388712		ChiTaRS3.1			U25276	TMEM245	chr9	111782323	-	GOLM1	chr9	88641303	-
intron-3UTR	ENST00000374586	ENST00000388711		ChiTaRS3.1			U25276	TMEM245	chr9	111782323	-	GOLM1	chr9	88641303	-
intron-intron	ENST00000374586	ENST00000257504		ChiTaRS3.1			U25276	TMEM245	chr9	111782323	-	GOLM1	chr9	88641303	-
intron-intron	ENST00000264538	ENST00000398214		ChiTaRS3.1			CA312916	IFT57	chr3	107885758	+	CD200R1L	chr3	112541750	+
intron-intron	ENST00000264538	ENST00000448932		ChiTaRS3.1			CA312916	IFT57	chr3	107885758	+	CD200R1L	chr3	112541750	+
intron-intron	ENST00000264538	ENST00000488794		ChiTaRS3.1			CA312916	IFT57	chr3	107885758	+	CD200R1L	chr3	112541750	+
intron-intron	ENST00000468021	ENST00000398214		ChiTaRS3.1			CA312916	IFT57	chr3	107885758	+	CD200R1L	chr3	112541750	+
intron-intron	ENST00000468021	ENST00000448932		ChiTaRS3.1			CA312916	IFT57	chr3	107885758	+	CD200R1L	chr3	112541750	+
intron-intron	ENST00000468021	ENST00000488794		ChiTaRS3.1			CA312916	IFT57	chr3	107885758	+	CD200R1L	chr3	112541750	+
intron-5UTR	ENST00000522243	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000522243	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000522243	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-5UTR	ENST00000422546	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000422546	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000422546	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-5UTR	ENST00000260130	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000260130	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000260130	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-5UTR	ENST00000447182	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000447182	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000447182	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-5UTR	ENST00000413219	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000413219	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000413219	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-5UTR	ENST00000424270	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000424270	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000424270	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-5UTR	ENST00000523483	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000523483	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-intron	ENST00000523483	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-5UTR	ENST00000520168	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000520168	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000520168	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-5UTR	ENST00000447267	ENST00000265062		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000447267	ENST00000482525		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
intron-intron	ENST00000447267	ENST00000485280		ChiTaRS3.1			DB200033	SDCBP	chr8	59495081	+	RAB7A	chr3	128445008	+
3UTR-5UTR	ENST00000252744	ENST00000261735		ChiTaRS3.1			DN998968	ZSWIM6	chr5	60840893	+	ERP29	chr12	112451264	+
3UTR-5UTR	ENST00000252744	ENST00000455836		ChiTaRS3.1			DN998968	ZSWIM6	chr5	60840893	+	ERP29	chr12	112451264	+
3UTR-intron	ENST00000252744	ENST00000546477		ChiTaRS3.1			DN998968	ZSWIM6	chr5	60840893	+	ERP29	chr12	112451264	+
Frame-shit	ENST00000446378	ENST00000422514		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
5CDS-5UTR	ENST00000446378	ENST00000496182		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
5CDS-5UTR	ENST00000446378	ENST00000394938		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
5CDS-5UTR	ENST00000446378	ENST00000472628		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
intron-3CDS	ENST00000505466	ENST00000422514		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
intron-5UTR	ENST00000505466	ENST00000496182		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
intron-5UTR	ENST00000505466	ENST00000394938		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
intron-5UTR	ENST00000505466	ENST00000472628		ChiTaRS3.1			BP259075	CMYA5	chr5	79034220	+	RPL23A	chr17	27047863	+
intron-3CDS	ENST00000368682	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368682	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368682	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368682	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368682	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368682	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368682	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368682	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368682	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000354650	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000354650	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000354650	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000354650	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000354650	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000354650	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000354650	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000354650	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000354650	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229471	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229471	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229471	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229471	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229471	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229471	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000229471	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000229471	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000229471	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368667	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368667	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368667	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368667	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368667	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368667	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368667	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368667	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368667	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368678	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368678	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368678	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368678	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368678	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000368678	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368678	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368678	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000368678	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229470	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229470	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229470	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229470	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229470	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000229470	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000229470	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000229470	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000229470	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000356013	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000356013	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000356013	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000356013	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000356013	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000356013	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000356013	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000356013	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000356013	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000538466	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000538466	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000538466	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000538466	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000538466	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000538466	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000538466	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000538466	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000538466	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000476769	ENST00000347401		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000476769	ENST00000353578		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000476769	ENST00000295550		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000476769	ENST00000472056		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000476769	ENST00000409809		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-3CDS	ENST00000476769	ENST00000346358		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000476769	ENST00000392004		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000476769	ENST00000392003		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000476769	ENST00000473258		ChiTaRS3.1			AI952526	FYN	chr6	111982765	+	COL6A3	chr2	238277525	+
intron-intron	ENST00000317147	ENST00000457823		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-3UTR	ENST00000317147	ENST00000354268		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000317147	ENST00000509418		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000569240	ENST00000457823		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-3UTR	ENST00000569240	ENST00000354268		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000569240	ENST00000509418		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000441024	ENST00000457823		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-3UTR	ENST00000441024	ENST00000354268		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000441024	ENST00000509418		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000569732	ENST00000457823		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-3UTR	ENST00000569732	ENST00000354268		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000569732	ENST00000509418		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000245138	ENST00000457823		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-3UTR	ENST00000245138	ENST00000354268		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
intron-intron	ENST00000245138	ENST00000509418		ChiTaRS3.1			CN352236	CNOT1	chr16	58590821	-	SMARCAD1	chr4	95212037	+
5CDS-3UTR	ENST00000297268	ENST00000382298		ChiTaRS3.1			AA417676	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
5CDS-3UTR	ENST00000297268	ENST00000402364		ChiTaRS3.1			AA417676	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
5CDS-3UTR	ENST00000297268	ENST00000382292		ChiTaRS3.1			AA417676	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
5CDS-intron	ENST00000297268	ENST00000476776		ChiTaRS3.1			AA417676	COL1A2	chr7	94057637	+	SACS	chr13	23903439	-
3UTR-intron	ENST00000557165	ENST00000538442		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000399150		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000252229		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000427115		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000442104		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000451603		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000546706		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000438954		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000458032		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000551950		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000437651		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000383514		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000551608		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000436531		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000436655		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000547574		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000400313		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000428416		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000549014		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000428059		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000451789		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000443156		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
3UTR-intron	ENST00000557165	ENST00000551960		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000538442		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000399150		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000252229		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000427115		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000442104		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000451603		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000546706		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000438954		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000458032		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000551950		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000437651		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000383514		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000551608		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000436531		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000436655		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000547574		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000400313		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000428416		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000549014		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000428059		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000451789		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000443156		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000389879	ENST00000551960		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000538442		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000399150		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000252229		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000427115		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000442104		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000451603		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000546706		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000438954		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000458032		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000551950		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000437651		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000383514		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000551608		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000436531		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000436655		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000547574		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000400313		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000428416		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000549014		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000428059		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000451789		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000443156		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5CDS-intron	ENST00000555049	ENST00000551960		ChiTaRS3.1			BF818740	CCNK	chr14	99959934	+	MICB	chr6	2583787	-
5UTR-3CDS	ENST00000314289	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000314289	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000314289	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-intron	ENST00000314289	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-3CDS	ENST00000541204	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000541204	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000541204	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-intron	ENST00000541204	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-3CDS	ENST00000509258	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000509258	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000509258	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-intron	ENST00000509258	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
3UTR-3CDS	ENST00000511843	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
3UTR-5UTR	ENST00000511843	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
3UTR-5UTR	ENST00000511843	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
3UTR-intron	ENST00000511843	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-3CDS	ENST00000511859	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000511859	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-5UTR	ENST00000511859	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
5UTR-intron	ENST00000511859	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-3CDS	ENST00000506706	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-5UTR	ENST00000506706	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-5UTR	ENST00000506706	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-intron	ENST00000506706	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-3CDS	ENST00000511600	ENST00000357067		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-5UTR	ENST00000511600	ENST00000438320		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-5UTR	ENST00000511600	ENST00000510370		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
intron-intron	ENST00000511600	ENST00000513383		ChiTaRS3.1			BM554139	RNF4	chr4	2470985	+	DCTD	chr4	183836729	-
3UTR-3UTR	ENST00000246533	ENST00000229270		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000246533	ENST00000396705		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-intron	ENST00000246533	ENST00000488464		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000246533	ENST00000535434		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000589146	ENST00000229270		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000589146	ENST00000396705		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-intron	ENST00000589146	ENST00000488464		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000589146	ENST00000535434		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000587718	ENST00000229270		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000587718	ENST00000396705		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-intron	ENST00000587718	ENST00000488464		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000587718	ENST00000535434		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000590874	ENST00000229270		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000590874	ENST00000396705		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-intron	ENST00000590874	ENST00000488464		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000590874	ENST00000535434		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000588815	ENST00000229270		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000588815	ENST00000396705		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-intron	ENST00000588815	ENST00000488464		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
3UTR-3UTR	ENST00000588815	ENST00000535434		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000588780	ENST00000229270		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000588780	ENST00000396705		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-intron	ENST00000588780	ENST00000488464		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-3UTR	ENST00000588780	ENST00000535434		ChiTaRS3.1			BG751641	CAPNS1	chr19	36641020	+	TPI1	chr12	6979864	+
intron-intron	ENST00000269033	ENST00000523764		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000269033	ENST00000521508		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000269033	ENST00000519151		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000540801	ENST00000523764		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000540801	ENST00000521508		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000540801	ENST00000519151		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000324677	ENST00000523764		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000324677	ENST00000521508		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000324677	ENST00000519151		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000582084	ENST00000523764		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000582084	ENST00000521508		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000582084	ENST00000519151		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000590153	ENST00000523764		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000590153	ENST00000521508		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000590153	ENST00000519151		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000579954	ENST00000523764		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000579954	ENST00000521508		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000579954	ENST00000519151		ChiTaRS3.1			DB107033	SSH2	chr17	28003439	-	ALG11	chr13	52606324	+
intron-intron	ENST00000340533	ENST00000369817		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000340533	ENST00000479366		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000340533	ENST00000424325		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000340533	ENST00000406022		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000369817		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000479366		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000424325		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000406022		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000369817		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000479366		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000424325		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000406022		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000369817		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000479366		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000424325		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000406022		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000369817		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000479366		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000424325		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000406022		ChiTaRS3.1			CB162793	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-3UTR	ENST00000369066	ENST00000394036		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000369066	ENST00000394045		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000369066	ENST00000348459		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000369066	ENST00000371332		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
5CDS-3UTR	ENST00000369066	ENST00000239026		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
5CDS-intron	ENST00000369066	ENST00000394044		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
5CDS-intron	ENST00000369066	ENST00000462057		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000535438	ENST00000394036		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000535438	ENST00000394045		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000535438	ENST00000348459		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000535438	ENST00000371332		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000535438	ENST00000239026		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-intron	ENST00000535438	ENST00000394044		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-intron	ENST00000535438	ENST00000462057		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000487681	ENST00000394036		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000487681	ENST00000394045		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000487681	ENST00000348459		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000487681	ENST00000371332		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000487681	ENST00000239026		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-intron	ENST00000487681	ENST00000394044		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-intron	ENST00000487681	ENST00000462057		ChiTaRS3.1			AU136737	AIM1	chr6	106978190	+	HELLS	chr10	96347986	+
intron-3UTR	ENST00000370994	ENST00000231061		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-intron	ENST00000370994	ENST00000537849		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-3UTR	ENST00000370995	ENST00000231061		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-intron	ENST00000370995	ENST00000537849		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-3UTR	ENST00000361219	ENST00000231061		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-intron	ENST00000361219	ENST00000537849		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-3UTR	ENST00000370990	ENST00000231061		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-intron	ENST00000370990	ENST00000537849		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-3UTR	ENST00000484880	ENST00000231061		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
intron-intron	ENST00000484880	ENST00000537849		ChiTaRS3.1			CB141411	SERBP1	chr1	67878759	-	SPARC	chr5	151042665	-
5CDS-3UTR	ENST00000375458	ENST00000452201		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000375458	ENST00000398417		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000375458	ENST00000342988		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000375458	ENST00000588745		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-intron	ENST00000375458	ENST00000586253		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000342193	ENST00000452201		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000342193	ENST00000398417		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000342193	ENST00000342988		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000342193	ENST00000588745		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-intron	ENST00000342193	ENST00000586253		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000409184	ENST00000452201		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000409184	ENST00000398417		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000409184	ENST00000342988		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000409184	ENST00000588745		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-intron	ENST00000409184	ENST00000586253		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000392717	ENST00000452201		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000392717	ENST00000398417		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000392717	ENST00000342988		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000392717	ENST00000588745		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-intron	ENST00000392717	ENST00000586253		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000194871	ENST00000452201		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000194871	ENST00000398417		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000194871	ENST00000342988		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-3UTR	ENST00000194871	ENST00000588745		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
5CDS-intron	ENST00000194871	ENST00000586253		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
intron-3UTR	ENST00000491126	ENST00000452201		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
intron-3UTR	ENST00000491126	ENST00000398417		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
intron-3UTR	ENST00000491126	ENST00000342988		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
intron-3UTR	ENST00000491126	ENST00000588745		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
intron-intron	ENST00000491126	ENST00000586253		ChiTaRS3.1			DA017543	COBLL1	chr2	165600197	-	SMAD4	chr18	48581149	+
Frame-shit	ENST00000273158	ENST00000298556		ChiTaRS3.1			BE180729	SLC25A38	chr3	39433380	+	HPRT1	chrX	133609267	+
5CDS-3UTR	ENST00000273158	ENST00000462974		ChiTaRS3.1			BE180729	SLC25A38	chr3	39433380	+	HPRT1	chrX	133609267	+
Frame-shit	ENST00000420890	ENST00000374530		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
Frame-shit	ENST00000420890	ENST00000302798		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
intron-3CDS	ENST00000480419	ENST00000374530		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
intron-3CDS	ENST00000480419	ENST00000302798		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
Frame-shit	ENST00000409284	ENST00000374530		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
Frame-shit	ENST00000409284	ENST00000302798		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
intron-3CDS	ENST00000295723	ENST00000374530		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
intron-3CDS	ENST00000295723	ENST00000302798		ChiTaRS3.1			DA587512	CCDC141	chr2	179912010	-	PALM2-AKAP2	chr9	112918597	+
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU216070	BCR	chr22	23596172	+	ABL1	chr9	133729537	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU216070	BCR	chr22	23596172	+	ABL1	chr9	133729537	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU216070	BCR	chr22	23596172	+	ABL1	chr9	133729537	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU216070	BCR	chr22	23596172	+	ABL1	chr9	133729537	+
3UTR-3UTR	ENST00000037243	ENST00000264731		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000037243	ENST00000382063		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000418709		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000320472		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000392460		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000440651		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000037243	ENST00000354600		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000437221		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000392463		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000392461		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000456148		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000037243	ENST00000449992		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-3UTR	ENST00000565057	ENST00000264731		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-3UTR	ENST00000565057	ENST00000382063		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000418709		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000320472		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000392460		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000440651		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-3UTR	ENST00000565057	ENST00000354600		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000437221		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000392463		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000392461		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000456148		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000565057	ENST00000449992		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000563744	ENST00000264731		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000563744	ENST00000382063		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000418709		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000320472		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000392460		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000440651		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000563744	ENST00000354600		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000437221		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000392463		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000392461		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000456148		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000563744	ENST00000449992		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-3UTR	ENST00000568455	ENST00000264731		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-3UTR	ENST00000568455	ENST00000382063		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000418709		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000320472		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000392460		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000440651		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-3UTR	ENST00000568455	ENST00000354600		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000437221		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000392463		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000392461		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000456148		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
intron-intron	ENST00000568455	ENST00000449992		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000565985	ENST00000264731		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000565985	ENST00000382063		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000418709		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000320472		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000392460		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000440651		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-3UTR	ENST00000565985	ENST00000354600		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000437221		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000392463		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000392461		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000456148		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
3UTR-intron	ENST00000565985	ENST00000449992		ChiTaRS3.1			BE843564	GABARAPL2	chr16	75611449	+	TP63	chr3	189614740	+
5UTR-3CDS	ENST00000486077	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
5UTR-3CDS	ENST00000486077	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
5UTR-3CDS	ENST00000486077	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
5UTR-intron	ENST00000486077	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000375845	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000375845	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000375845	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000375845	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392917	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392917	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392917	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000392917	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000358371	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000358371	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000358371	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000358371	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000375844	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000375844	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000375844	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000375844	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392918	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392918	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392918	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000392918	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392915	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392915	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000392915	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000392915	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000315513	ENST00000463745		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000315513	ENST00000394206		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000315513	ENST00000335979		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-intron	ENST00000315513	ENST00000496713		ChiTaRS3.1			DB235086	MAP3K19	chr2	135804755	-	ARL6	chr3	97516865	+
intron-3CDS	ENST00000367142	ENST00000415229		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3CDS	ENST00000367142	ENST00000535727		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3CDS	ENST00000367142	ENST00000301776		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3UTR	ENST00000367142	ENST00000528206		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3CDS	ENST00000464938	ENST00000415229		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3CDS	ENST00000464938	ENST00000535727		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3CDS	ENST00000464938	ENST00000301776		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
intron-3UTR	ENST00000464938	ENST00000528206		ChiTaRS3.1			BQ343733	NUCKS1	chr1	205687515	-	ASRGL1	chr11	62124549	+
5CDS-3UTR	ENST00000053867	ENST00000397239		ChiTaRS3.1			BU616891	GRN	chr17	42430153	-	DEK	chr6	18225095	+
5CDS-intron	ENST00000053867	ENST00000244776		ChiTaRS3.1			BU616891	GRN	chr17	42430153	-	DEK	chr6	18225095	+
5CDS-3UTR	ENST00000589265	ENST00000397239		ChiTaRS3.1			BU616891	GRN	chr17	42430153	-	DEK	chr6	18225095	+
5CDS-intron	ENST00000589265	ENST00000244776		ChiTaRS3.1			BU616891	GRN	chr17	42430153	-	DEK	chr6	18225095	+
intron-3UTR	ENST00000589923	ENST00000397239		ChiTaRS3.1			BU616891	GRN	chr17	42430153	-	DEK	chr6	18225095	+
intron-intron	ENST00000589923	ENST00000244776		ChiTaRS3.1			BU616891	GRN	chr17	42430153	-	DEK	chr6	18225095	+
intron-3CDS	ENST00000317089	ENST00000324856		ChiTaRS3.1			BP213958	DNAJA2	chr16	46998637	-	ARID1A	chr1	27106115	+
intron-3CDS	ENST00000317089	ENST00000457599		ChiTaRS3.1			BP213958	DNAJA2	chr16	46998637	-	ARID1A	chr1	27106115	+
intron-3CDS	ENST00000317089	ENST00000374152		ChiTaRS3.1			BP213958	DNAJA2	chr16	46998637	-	ARID1A	chr1	27106115	+
intron-3CDS	ENST00000317089	ENST00000540690		ChiTaRS3.1			BP213958	DNAJA2	chr16	46998637	-	ARID1A	chr1	27106115	+
5CDS-3UTR	ENST00000225719	ENST00000493946		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000225719	ENST00000539281		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000225719	ENST00000369710		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000225719	ENST00000369713		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000543464	ENST00000493946		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000543464	ENST00000539281		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000543464	ENST00000369710		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
5CDS-3UTR	ENST00000543464	ENST00000369713		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
intron-3UTR	ENST00000584051	ENST00000493946		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
intron-3UTR	ENST00000584051	ENST00000539281		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
intron-3UTR	ENST00000584051	ENST00000369710		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
intron-3UTR	ENST00000584051	ENST00000369713		ChiTaRS3.1			AA234313	CPD	chr17	28766081	+	GSTO1	chr10	106019490	+
intron-3UTR	ENST00000376630	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-intron	ENST00000376630	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-3UTR	ENST00000415649	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-intron	ENST00000415649	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-3UTR	ENST00000415289	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-intron	ENST00000415289	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-3UTR	ENST00000444683	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-intron	ENST00000444683	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-3UTR	ENST00000383597	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-intron	ENST00000383597	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-3UTR	ENST00000425603	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-intron	ENST00000425603	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
3UTR-3UTR	ENST00000427936	ENST00000272462		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
3UTR-intron	ENST00000427936	ENST00000427178		ChiTaRS3.1			BE904936	HLA-E	chr6	1793088	+	MALL	chr2	110842600	-
intron-3UTR	ENST00000324446	ENST00000409699		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
intron-3UTR	ENST00000324446	ENST00000360698		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
intron-3UTR	ENST00000324446	ENST00000422354		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
intron-3UTR	ENST00000324446	ENST00000395625		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
intron-3UTR	ENST00000324446	ENST00000288745		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
intron-intron	ENST00000324446	ENST00000478721		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
intron-intron	ENST00000324446	ENST00000395614		ChiTaRS3.1			BF529317	TTTY14	chrY	21153077	-	MEGF11	chr15	66189895	-
Frame-shit	ENST00000332149	ENST00000430479		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
Frame-shit	ENST00000332149	ENST00000399357		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000420159		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000343495		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000242066		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000405192		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000405358		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000403527		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000405218		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000332149	ENST00000403685		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-5UTR	ENST00000332149	ENST00000476720		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
Frame-shit	ENST00000398585	ENST00000430479		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
Frame-shit	ENST00000398585	ENST00000399357		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000420159		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000343495		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000242066		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000405192		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000405358		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000403527		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000405218		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000398585	ENST00000403685		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-5UTR	ENST00000398585	ENST00000476720		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
Frame-shit	ENST00000458356	ENST00000430479		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
Frame-shit	ENST00000458356	ENST00000399357		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000420159		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000343495		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000242066		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000405192		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000405358		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000403527		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000405218		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-intron	ENST00000458356	ENST00000403685		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5CDS-5UTR	ENST00000458356	ENST00000476720		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-3CDS	ENST00000497881	ENST00000430479		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-3CDS	ENST00000497881	ENST00000399357		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000420159		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000343495		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000242066		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000405192		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000405358		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000403527		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000405218		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-intron	ENST00000497881	ENST00000403685		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
5UTR-5UTR	ENST00000497881	ENST00000476720		ChiTaRS3.1			DQ204771	TMPRSS2	chr21	42870046	-	ETV1	chr7	14017105	-
3UTR-3CDS	ENST00000423278	ENST00000269856		ChiTaRS3.1			DA529073	MIAT	chr22	27071142	+	FEM1A	chr19	4793104	+
intron-intron	ENST00000546244	ENST00000530157		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000546244	ENST00000525451		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000546244	ENST00000308162		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000546244	ENST00000527344		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000546244	ENST00000531407		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000546244	ENST00000524553		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000546244	ENST00000534769		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000546244	ENST00000531413		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000343810	ENST00000530157		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000343810	ENST00000525451		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000343810	ENST00000308162		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000343810	ENST00000527344		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000343810	ENST00000531407		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000343810	ENST00000524553		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000343810	ENST00000534769		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000343810	ENST00000531413		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000550165	ENST00000530157		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000550165	ENST00000525451		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000550165	ENST00000308162		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000550165	ENST00000527344		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000550165	ENST00000531407		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000550165	ENST00000524553		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000550165	ENST00000534769		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000550165	ENST00000531413		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000547182	ENST00000530157		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000547182	ENST00000525451		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000547182	ENST00000308162		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000547182	ENST00000527344		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000547182	ENST00000531407		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000547182	ENST00000524553		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000547182	ENST00000534769		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000547182	ENST00000531413		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000357123	ENST00000530157		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000357123	ENST00000525451		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-5UTR	ENST00000357123	ENST00000308162		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000357123	ENST00000527344		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000357123	ENST00000531407		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000357123	ENST00000524553		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000357123	ENST00000534769		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-intron	ENST00000357123	ENST00000531413		ChiTaRS3.1			AK123187	MCRS1	chr12	49960624	-	CFL1	chr11	65625651	-
intron-3CDS	ENST00000275732	ENST00000415355		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000275732	ENST00000216341		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000275732	ENST00000382540		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000275732	ENST00000382542		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3UTR	ENST00000275732	ENST00000526004		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000471340	ENST00000415355		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000471340	ENST00000216341		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000471340	ENST00000382540		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3CDS	ENST00000471340	ENST00000382542		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3UTR	ENST00000471340	ENST00000526004		ChiTaRS3.1			CF528869	GIGYF1	chr7	100277413	+	GZMB	chr14	25101096	+
intron-3UTR	ENST00000328735	ENST00000318008		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-intron	ENST00000328735	ENST00000433206		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000328735	ENST00000435347		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000330333	ENST00000318008		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-intron	ENST00000330333	ENST00000433206		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000330333	ENST00000435347		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000347667	ENST00000318008		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-intron	ENST00000347667	ENST00000433206		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000347667	ENST00000435347		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000466122	ENST00000318008		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-intron	ENST00000466122	ENST00000433206		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3UTR	ENST00000466122	ENST00000435347		ChiTaRS3.1			BF822252	BACE2	chr21	42556378	-	LASP1	chr17	37076846	+
intron-3CDS	ENST00000267615	ENST00000296412		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-5UTR	ENST00000267615	ENST00000512991		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-3CDS	ENST00000354313	ENST00000296412		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-5UTR	ENST00000354313	ENST00000512991		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-3CDS	ENST00000556603	ENST00000296412		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-5UTR	ENST00000556603	ENST00000512991		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-3CDS	ENST00000555495	ENST00000296412		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-5UTR	ENST00000555495	ENST00000512991		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-3CDS	ENST00000556954	ENST00000296412		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-5UTR	ENST00000556954	ENST00000512991		ChiTaRS3.1			BQ338215	ITPK1	chr14	93549336	-	ADH5	chr4	99997876	-
intron-intron	ENST00000217131	ENST00000535729		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-3UTR	ENST00000217131	ENST00000431221		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-3UTR	ENST00000217131	ENST00000547005		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-3UTR	ENST00000217131	ENST00000311893		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-3UTR	ENST00000217131	ENST00000338291		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-3UTR	ENST00000217131	ENST00000392807		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-intron	ENST00000217131	ENST00000539593		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
intron-3UTR	ENST00000217131	ENST00000540154		ChiTaRS3.1			BE677849	CTSZ	chr20	57581432	-	ISCU	chr12	108962607	+
5CDS-intron	ENST00000312917	ENST00000312233		ChiTaRS3.1			BG218678	PNPLA1	chr6	36275488	+	GLIS1	chr1	54188564	-
5CDS-intron	ENST00000388715	ENST00000312233		ChiTaRS3.1			BG218678	PNPLA1	chr6	36275488	+	GLIS1	chr1	54188564	-
5CDS-intron	ENST00000394571	ENST00000312233		ChiTaRS3.1			BG218678	PNPLA1	chr6	36275488	+	GLIS1	chr1	54188564	-
intron-3CDS	ENST00000570137	ENST00000262193		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000570137	ENST00000462957		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000562812	ENST00000262193		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000562812	ENST00000462957		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000566173	ENST00000262193		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000566173	ENST00000462957		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000563890	ENST00000262193		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000563890	ENST00000462957		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-3CDS	ENST00000562753	ENST00000262193		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-5UTR	ENST00000562753	ENST00000462957		ChiTaRS3.1			DA076564	CDYL2	chr16	80837674	-	PSMB1	chr6	170858204	-
intron-intron	ENST00000421745	ENST00000334418		ChiTaRS3.1			BE561769	BIRC6	chr2	32787851	+	CCDC84	chr11	118889058	-
intron-intron	ENST00000421745	ENST00000580556		ChiTaRS3.1			BE561769	BIRC6	chr2	32787851	+	CCDC84	chr11	118889058	-
intron-3UTR	ENST00000530157	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000530157	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000525451	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000525451	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000308162	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000308162	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000527344	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000527344	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000531407	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000531407	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000524553	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000524553	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000534769	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000534769	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3UTR	ENST00000531413	ENST00000393085		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-intron	ENST00000531413	ENST00000435723		ChiTaRS3.1			CB149514	CFL1	chr11	65623142	-	MTPN	chr7	135612472	-
intron-3CDS	ENST00000296215	ENST00000297268		ChiTaRS3.1			AU117270	SNIP1	chr1	38018088	-	COL1A2	chr7	94057673	+
intron-3CDS	ENST00000468040	ENST00000297268		ChiTaRS3.1			AU117270	SNIP1	chr1	38018088	-	COL1A2	chr7	94057673	+
Frame-shit	ENST00000495893	ENST00000465357		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000495893	ENST00000539517		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000495893	ENST00000267422		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000495893	ENST00000344429		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000495893	ENST00000547619		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000495893	ENST00000574031		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-intron	ENST00000495893	ENST00000551754		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000494943	ENST00000465357		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000494943	ENST00000539517		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000494943	ENST00000267422		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000494943	ENST00000344429		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000494943	ENST00000547619		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000494943	ENST00000574031		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-intron	ENST00000494943	ENST00000551754		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000467570	ENST00000465357		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000467570	ENST00000539517		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000467570	ENST00000267422		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000467570	ENST00000344429		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000467570	ENST00000547619		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000467570	ENST00000574031		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-intron	ENST00000467570	ENST00000551754		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000474275	ENST00000465357		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
Frame-shit	ENST00000474275	ENST00000539517		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000474275	ENST00000267422		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000474275	ENST00000344429		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000474275	ENST00000547619		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-5UTR	ENST00000474275	ENST00000574031		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
5CDS-intron	ENST00000474275	ENST00000551754		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000497658	ENST00000465357		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000497658	ENST00000539517		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000497658	ENST00000267422		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000497658	ENST00000344429		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000497658	ENST00000547619		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000497658	ENST00000574031		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-intron	ENST00000497658	ENST00000551754		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000481639	ENST00000465357		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000481639	ENST00000539517		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000481639	ENST00000267422		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000481639	ENST00000344429		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000481639	ENST00000547619		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-5UTR	ENST00000481639	ENST00000574031		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-intron	ENST00000481639	ENST00000551754		ChiTaRS3.1			DA101766	PHC3	chr3	169889158	-	NOVA1	chr14	26949349	-
intron-3CDS	ENST00000342183	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000342183	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000342183	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000342183	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401710	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000401710	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000401710	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000404971	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000404971	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000404971	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406316	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000406316	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000406316	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405472	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000405472	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000405472	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000401669	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000401669	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000401669	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000406859	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000406859	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000406859	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000402717	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000402717	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000402717	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000331040	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000331040	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000331040	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000342183		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000401710		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000404971		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000406316		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000405472		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000401669		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000406859		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3CDS	ENST00000405581	ENST00000402717		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000405581	ENST00000331040		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-intron	ENST00000405581	ENST00000405581		ChiTaRS3.1			BX487736	NRXN1	chr2	51256112	-	NRXN1	chr2	50170866	-
intron-3UTR	ENST00000369016	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369016	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369016	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000369016	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369014	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369014	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369014	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000369014	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369009	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369009	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000369009	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000369009	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000339643	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000339643	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000339643	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000339643	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000271690	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000271690	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000271690	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000271690	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000356527	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000356527	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000356527	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000356527	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000503345	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000503345	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000503345	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000503345	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000503241	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000503241	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000503241	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000503241	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000362052	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000362052	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000362052	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000362052	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000361532	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000361532	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000361532	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000361532	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000361631	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000361631	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000361631	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000361631	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000513281	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000513281	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000513281	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000513281	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000354702	ENST00000347136		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000354702	ENST00000372406		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-3UTR	ENST00000354702	ENST00000372410		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
intron-intron	ENST00000354702	ENST00000415344		ChiTaRS3.1			DB021778	ENSA	chr1	150599964	-	GPR107	chr9	132900803	+
5UTR-5UTR	ENST00000009041	ENST00000230859		ChiTaRS3.1			AK289857	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5UTR-5UTR	ENST00000544203	ENST00000230859		ChiTaRS3.1			AK289857	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5UTR-5UTR	ENST00000434197	ENST00000230859		ChiTaRS3.1			AK289857	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5UTR-5UTR	ENST00000396013	ENST00000230859		ChiTaRS3.1			AK289857	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
Frame-shit	ENST00000355485	ENST00000263549		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
5CDS-5UTR	ENST00000355485	ENST00000470515		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
Frame-shit	ENST00000369510	ENST00000263549		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
5CDS-5UTR	ENST00000369510	ENST00000470515		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
Frame-shit	ENST00000310260	ENST00000263549		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
5CDS-5UTR	ENST00000310260	ENST00000470515		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
Frame-shit	ENST00000369509	ENST00000263549		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
5CDS-5UTR	ENST00000369509	ENST00000470515		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
intron-3CDS	ENST00000474344	ENST00000263549		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
intron-5UTR	ENST00000474344	ENST00000470515		ChiTaRS3.1			DR423509	VANGL1	chr1	116194106	+	PARP12	chr7	139737657	-
intron-intron	ENST00000338316	ENST00000326639		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000264584		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000441387		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000354456		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000506199		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000512292		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000338316	ENST00000394288		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000338316	ENST00000432347		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000427266		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000326639		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000264584		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000441387		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000354456		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000506199		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000512292		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000537121	ENST00000394288		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000537121	ENST00000432347		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000427266		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000326639		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000264584		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000441387		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000354456		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000506199		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000512292		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000513693	ENST00000394288		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000513693	ENST00000432347		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000427266		ChiTaRS3.1			AA303012	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
5CDS-3UTR	ENST00000263598	ENST00000367658		ChiTaRS3.1			CD723346	LCN1	chr9	138416738	+	HECA	chr6	139501807	+
5CDS-3UTR	ENST00000371781	ENST00000367658		ChiTaRS3.1			CD723346	LCN1	chr9	138416738	+	HECA	chr6	139501807	+
intron-3CDS	ENST00000522853	ENST00000202773		ChiTaRS3.1			BG531737	NEURL1B	chr5	172083687	-	RPL6	chr12	112846136	-
intron-3CDS	ENST00000522853	ENST00000424576		ChiTaRS3.1			BG531737	NEURL1B	chr5	172083687	-	RPL6	chr12	112846136	-
intron-3CDS	ENST00000520919	ENST00000202773		ChiTaRS3.1			BG531737	NEURL1B	chr5	172083687	-	RPL6	chr12	112846136	-
intron-3CDS	ENST00000520919	ENST00000424576		ChiTaRS3.1			BG531737	NEURL1B	chr5	172083687	-	RPL6	chr12	112846136	-
intron-3CDS	ENST00000369800	ENST00000202773		ChiTaRS3.1			BG531737	NEURL1B	chr5	172083687	-	RPL6	chr12	112846136	-
intron-3CDS	ENST00000369800	ENST00000424576		ChiTaRS3.1			BG531737	NEURL1B	chr5	172083687	-	RPL6	chr12	112846136	-
intron-3CDS	ENST00000548898	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548898	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548898	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548898	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548898	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000552067	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552067	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552067	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552067	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552067	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000420846	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000420846	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000420846	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000420846	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000420846	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000548160	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548160	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548160	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548160	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000548160	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000546939	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000546939	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000546939	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000546939	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000546939	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000552692	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552692	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552692	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552692	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552692	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000549117	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000549117	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000549117	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000549117	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000549117	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000257857	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000257857	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000257857	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000257857	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000257857	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000552754	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552754	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552754	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552754	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000552754	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000550776	ENST00000601521		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000550776	ENST00000598098		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000550776	ENST00000598495		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000550776	ENST00000196551		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-intron	ENST00000550776	ENST00000596046		ChiTaRS3.1			CF128579	CD63	chr12	56119614	-	RPS5	chr19	58904396	+
intron-3CDS	ENST00000439986	ENST00000372583		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000439986	ENST00000372584		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000439986	ENST00000247584		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000439986	ENST00000429157		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-intron	ENST00000439986	ENST00000460604		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000398179	ENST00000372583		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000398179	ENST00000372584		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000398179	ENST00000247584		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-3CDS	ENST00000398179	ENST00000429157		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
intron-intron	ENST00000398179	ENST00000460604		ChiTaRS3.1			BF812042	CCBE1	chr18	57102789	-	HIVEP3	chr1	42047740	-
5UTR-5UTR	ENST00000319441	ENST00000361355		ChiTaRS3.1			BJ994441	PCK1	chr20	56136259	+	AMY2B	chr1	104108055	+
5UTR-intron	ENST00000319441	ENST00000491397		ChiTaRS3.1			BJ994441	PCK1	chr20	56136259	+	AMY2B	chr1	104108055	+
5UTR-5UTR	ENST00000543666	ENST00000361355		ChiTaRS3.1			BJ994441	PCK1	chr20	56136259	+	AMY2B	chr1	104108055	+
5UTR-intron	ENST00000543666	ENST00000491397		ChiTaRS3.1			BJ994441	PCK1	chr20	56136259	+	AMY2B	chr1	104108055	+
intron-5UTR	ENST00000535860	ENST00000361355		ChiTaRS3.1			BJ994441	PCK1	chr20	56136259	+	AMY2B	chr1	104108055	+
intron-intron	ENST00000535860	ENST00000491397		ChiTaRS3.1			BJ994441	PCK1	chr20	56136259	+	AMY2B	chr1	104108055	+
intron-3CDS	ENST00000408982	ENST00000346169		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000414031		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000392537		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000382330		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000350481		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000352767		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000427845		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000342981		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000319274		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000424196		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000411531		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000441154		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000434061		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000435046		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000346169		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000414031		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000392537		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000382330		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000350481		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000352767		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000427845		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000342981		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000319274		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000424196		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000411531		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000441154		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000434061		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000435046		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000346169		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000414031		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000392537		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000382330		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000350481		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000352767		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000427845		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000342981		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000319274		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000424196		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000411531		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000441154		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000434061		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000435046		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000346169		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000414031		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000392537		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000382330		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000350481		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000352767		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000427845		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000342981		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000319274		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000424196		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000411531		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000441154		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000434061		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000435046		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000346169		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000414031		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000392537		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000382330		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000350481		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000352767		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000427845		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000342981		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000319274		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000424196		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000411531		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000441154		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000434061		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000435046		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000346169		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000414031		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000392537		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000382330		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000350481		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000352767		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000427845		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000342981		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000319274		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000424196		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000411531		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000441154		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000434061		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000435046		ChiTaRS3.1			AI700104	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3UTR	ENST00000395131	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374606	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374610	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374607	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000463584	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000445559	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000452658	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000448594	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547952	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000491095	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000412289	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000425878	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000442285	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000552711	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000474406	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000431830	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000432391	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000451970	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547641	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000468094	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399385	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399383	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000383207	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000548040	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000482292	ENST00000293677		ChiTaRS3.1			BE410946	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-intron	ENST00000368491	ENST00000316292		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000368491	ENST00000491404		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-5UTR	ENST00000368491	ENST00000309268		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000368491	ENST00000331523		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000368488	ENST00000316292		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000368488	ENST00000491404		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-5UTR	ENST00000368488	ENST00000309268		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000368488	ENST00000331523		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000360290	ENST00000316292		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000360290	ENST00000491404		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-5UTR	ENST00000360290	ENST00000309268		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000360290	ENST00000331523		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000392500	ENST00000316292		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000392500	ENST00000491404		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-5UTR	ENST00000392500	ENST00000309268		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000392500	ENST00000331523		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000419517	ENST00000316292		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000419517	ENST00000491404		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-5UTR	ENST00000419517	ENST00000309268		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000419517	ENST00000331523		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000472713	ENST00000316292		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000472713	ENST00000491404		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-5UTR	ENST00000472713	ENST00000309268		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-intron	ENST00000472713	ENST00000331523		ChiTaRS3.1			DA091240	CEP85L	chr6	118949708	-	EEF1A1	chr6	74230757	-
intron-3UTR	ENST00000521308	ENST00000316423		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-3UTR	ENST00000521308	ENST00000501493		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-3UTR	ENST00000521308	ENST00000506179		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-intron	ENST00000521308	ENST00000507089		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-intron	ENST00000521308	ENST00000515398		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-3UTR	ENST00000355417	ENST00000316423		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-3UTR	ENST00000355417	ENST00000501493		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-3UTR	ENST00000355417	ENST00000506179		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-intron	ENST00000355417	ENST00000507089		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-intron	ENST00000355417	ENST00000515398		ChiTaRS3.1			BC013053	CCDC69	chr5	150561074	-	UGDH	chr4	39501410	-
intron-3CDS	ENST00000242728	ENST00000330537		ChiTaRS3.1			BQ326474	BHLHE41	chr12	26276648	-	NOMO2	chr16	18569111	-
intron-3CDS	ENST00000242728	ENST00000381474		ChiTaRS3.1			BQ326474	BHLHE41	chr12	26276648	-	NOMO2	chr16	18569111	-
intron-5UTR	ENST00000242728	ENST00000543392		ChiTaRS3.1			BQ326474	BHLHE41	chr12	26276648	-	NOMO2	chr16	18569111	-
intron-intron	ENST00000549231	ENST00000337221		ChiTaRS3.1			BF829820	MBD6	chr12	57923023	+	SCARA3	chr8	27530116	+
intron-3UTR	ENST00000549231	ENST00000301904		ChiTaRS3.1			BF829820	MBD6	chr12	57923023	+	SCARA3	chr8	27530116	+
3UTR-intron	ENST00000355673	ENST00000337221		ChiTaRS3.1			BF829820	MBD6	chr12	57923023	+	SCARA3	chr8	27530116	+
3UTR-3UTR	ENST00000355673	ENST00000301904		ChiTaRS3.1			BF829820	MBD6	chr12	57923023	+	SCARA3	chr8	27530116	+
3UTR-intron	ENST00000431731	ENST00000337221		ChiTaRS3.1			BF829820	MBD6	chr12	57923023	+	SCARA3	chr8	27530116	+
3UTR-3UTR	ENST00000431731	ENST00000301904		ChiTaRS3.1			BF829820	MBD6	chr12	57923023	+	SCARA3	chr8	27530116	+
5UTR-intron	ENST00000264258	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000273854		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000432638		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000354839		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000511294		ChiTaRS3.1			AI110701	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
3UTR-3UTR	ENST00000405402	ENST00000252804		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
3UTR-intron	ENST00000405402	ENST00000483018		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
3UTR-3UTR	ENST00000253458	ENST00000252804		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
3UTR-intron	ENST00000253458	ENST00000483018		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
3UTR-3UTR	ENST00000393243	ENST00000252804		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
3UTR-intron	ENST00000393243	ENST00000483018		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
intron-3UTR	ENST00000471070	ENST00000252804		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
intron-intron	ENST00000471070	ENST00000483018		ChiTaRS3.1			BF845185	GSE1	chr16	85706855	+	PXDN	chr2	1636271	-
intron-3UTR	ENST00000439374	ENST00000311936		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000439374	ENST00000557334		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000439374	ENST00000256078		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000439374	ENST00000556131		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-3UTR	ENST00000540998	ENST00000311936		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000540998	ENST00000557334		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000540998	ENST00000256078		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000540998	ENST00000556131		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-3UTR	ENST00000357235	ENST00000311936		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000357235	ENST00000557334		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000357235	ENST00000256078		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000357235	ENST00000556131		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-3UTR	ENST00000492796	ENST00000311936		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000492796	ENST00000557334		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000492796	ENST00000256078		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
intron-intron	ENST00000492796	ENST00000556131		ChiTaRS3.1			BE150903	CDC42SE1	chr1	151024290	-	KRAS	chr12	25361596	-
3UTR-intron	ENST00000534336	ENST00000548589		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000552699		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000267115		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000549385		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000423828		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000395006		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000547798		ChiTaRS3.1			BE694076	MALAT1	chr11	65269352	+	TMBIM6	chr12	50152546	-
5CDS-intron	ENST00000316534	ENST00000402038		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000316534	ENST00000492350		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000445609	ENST00000402038		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000445609	ENST00000492350		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000393272	ENST00000402038		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000393272	ENST00000492350		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000355301	ENST00000402038		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000355301	ENST00000492350		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000417665	ENST00000402038		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000417665	ENST00000492350		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000418527	ENST00000402038		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
5CDS-intron	ENST00000418527	ENST00000492350		ChiTaRS3.1			DA809283	NPHP1	chr2	110962477	-	PARG	chr10	51363789	-
intron-3CDS	ENST00000369831	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000543796		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000541630		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000392369		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000254675		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000392367		ChiTaRS3.1			BU855095	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3UTR	ENST00000416947	ENST00000373019		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-3UTR	ENST00000416947	ENST00000448721		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-intron	ENST00000416947	ENST00000489537		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-3UTR	ENST00000493503	ENST00000373019		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-3UTR	ENST00000493503	ENST00000448721		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-intron	ENST00000493503	ENST00000489537		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
3UTR-3UTR	ENST00000270139	ENST00000373019		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
3UTR-3UTR	ENST00000270139	ENST00000448721		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
3UTR-intron	ENST00000270139	ENST00000489537		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-3UTR	ENST00000442357	ENST00000373019		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-3UTR	ENST00000442357	ENST00000448721		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-intron	ENST00000442357	ENST00000489537		ChiTaRS3.1			BG122959	IFNAR1	chr21	34728866	+	SF3A3	chr1	38423772	-
intron-intron	ENST00000293872	ENST00000397668		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000293872	ENST00000264827		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000293872	ENST00000589965		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000337351	ENST00000397668		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000337351	ENST00000264827		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000337351	ENST00000589965		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000397783	ENST00000397668		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000397783	ENST00000264827		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000397783	ENST00000589965		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000397780	ENST00000397668		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000397780	ENST00000264827		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000397780	ENST00000589965		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000494366	ENST00000397668		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000494366	ENST00000264827		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
intron-intron	ENST00000494366	ENST00000589965		ChiTaRS3.1			CV318627	LUC7L	chr16	259763	-	HOOK2	chr19	12884968	-
5UTR-3CDS	ENST00000418604	ENST00000366647		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3CDS	ENST00000418604	ENST00000366646		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3UTR	ENST00000418604	ENST00000469332		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3CDS	ENST00000303958	ENST00000366647		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3CDS	ENST00000303958	ENST00000366646		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3UTR	ENST00000303958	ENST00000469332		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3CDS	ENST00000361621	ENST00000366647		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3CDS	ENST00000361621	ENST00000366646		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
5UTR-3UTR	ENST00000361621	ENST00000469332		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
intron-3CDS	ENST00000466486	ENST00000366647		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
intron-3CDS	ENST00000466486	ENST00000366646		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
intron-3UTR	ENST00000466486	ENST00000469332		ChiTaRS3.1			DA174856	PLP1	chrX	103031891	+	GNPAT	chr1	231410993	+
intron-intron	ENST00000343348	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372391		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372388		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000459739		ChiTaRS3.1			BF990526	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
Frame-shit	ENST00000005340	ENST00000255608		ChiTaRS3.1			DA514644	DVL2	chr17	7137386	-	BTBD2	chr19	1997463	-
5CDS-5UTR	ENST00000005340	ENST00000590646		ChiTaRS3.1			DA514644	DVL2	chr17	7137386	-	BTBD2	chr19	1997463	-
Frame-shit	ENST00000575458	ENST00000255608		ChiTaRS3.1			DA514644	DVL2	chr17	7137386	-	BTBD2	chr19	1997463	-
5CDS-5UTR	ENST00000575458	ENST00000590646		ChiTaRS3.1			DA514644	DVL2	chr17	7137386	-	BTBD2	chr19	1997463	-
intron-3CDS	ENST00000574642	ENST00000255608		ChiTaRS3.1			DA514644	DVL2	chr17	7137386	-	BTBD2	chr19	1997463	-
intron-5UTR	ENST00000574642	ENST00000590646		ChiTaRS3.1			DA514644	DVL2	chr17	7137386	-	BTBD2	chr19	1997463	-
5CDS-3UTR	ENST00000517671	ENST00000466801		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000517671	ENST00000409321		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000517671	ENST00000409115		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000517671	ENST00000341369		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000517671	ENST00000409683		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000517671	ENST00000410064		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000296930	ENST00000466801		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000296930	ENST00000409321		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000296930	ENST00000409115		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000296930	ENST00000341369		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000296930	ENST00000409683		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000296930	ENST00000410064		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000351986	ENST00000466801		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000351986	ENST00000409321		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000351986	ENST00000409115		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000351986	ENST00000341369		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000351986	ENST00000409683		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000351986	ENST00000410064		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000393820	ENST00000466801		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000393820	ENST00000409321		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000393820	ENST00000409115		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000393820	ENST00000341369		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000393820	ENST00000409683		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-3UTR	ENST00000393820	ENST00000410064		ChiTaRS3.1			BG255268	NPM1	chr5	170818771	+	PTMA	chr2	232576618	+
5CDS-5UTR	ENST00000332050	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332050	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332050	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332050	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332050	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332050	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000397938	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000397938	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000397938	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000397938	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000397938	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000397938	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000406548	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000406548	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000406548	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000406548	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000406548	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000406548	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000331029	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000331029	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000331029	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000331029	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000331029	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000331029	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000414183	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000414183	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000414183	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000414183	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000414183	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000414183	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000333395	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000333395	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000333395	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000333395	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000333395	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000333395	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332035	ENST00000396795		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332035	ENST00000319770		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332035	ENST00000396801		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332035	ENST00000361959		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332035	ENST00000355772		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
5CDS-5UTR	ENST00000332035	ENST00000396799		ChiTaRS3.1			EU327511	EWSR1	chr22	29688158	+	ZNF384	chr12	6797394	-
intron-5UTR	ENST00000390237	ENST00000339399		ChiTaRS3.1			BQ330780	IGKC	chr2	89156870	-	ANP32B	chr9	100745818	+
intron-intron	ENST00000390237	ENST00000473205		ChiTaRS3.1			BQ330780	IGKC	chr2	89156870	-	ANP32B	chr9	100745818	+
In-frame	ENST00000216602	ENST00000376113		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000346226		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000352848		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000393041		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000348750		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000357970		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000259238		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000393040		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000351659		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000316724		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000216602	ENST00000409400		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
5CDS-intron	ENST00000216602	ENST00000466111		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000376113		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000346226		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000352848		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000393041		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000348750		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000357970		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000259238		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000393040		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000351659		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000316724		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
In-frame	ENST00000311141	ENST00000409400		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
5CDS-intron	ENST00000311141	ENST00000466111		ChiTaRS3.1			BQ068183	ZFYVE21	chr14	104182318	+	BIN1	chr2	127834284	-
5CDS-5UTR	ENST00000360540	ENST00000378454		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-intron	ENST00000360540	ENST00000378450		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-5UTR	ENST00000544451	ENST00000378454		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-intron	ENST00000544451	ENST00000378450		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5UTR-5UTR	ENST00000519559	ENST00000378454		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5UTR-intron	ENST00000519559	ENST00000378450		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-5UTR	ENST00000522514	ENST00000378454		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-intron	ENST00000522514	ENST00000378450		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-5UTR	ENST00000521344	ENST00000378454		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-intron	ENST00000521344	ENST00000378450		ChiTaRS3.1			BG750306	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			AW993959	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3CDS	ENST00000332408	ENST00000265471		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000332408	ENST00000531383		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000332408	ENST00000534026		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000396535	ENST00000265471		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000396535	ENST00000531383		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000396535	ENST00000534026		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000537958	ENST00000265471		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000537958	ENST00000531383		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000537958	ENST00000534026		ChiTaRS3.1			BP227858	SHC4	chr15	49170723	+	B3GAT3	chr11	62388102	-
intron-3CDS	ENST00000607838	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000261182		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000393263		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000431879		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000547773		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000544816		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000542344		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000535020		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000549596		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000547993		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000552342		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000548044		ChiTaRS3.1			BF804799	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
3UTR-3UTR	ENST00000422447	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000422447	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000422447	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000422447	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000422447	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000422447	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000422447	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000430553	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000430553	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000430553	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000430553	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000430553	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000430553	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000430553	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000396222	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000396222	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000396222	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000396222	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000396222	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000396222	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000396222	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000227157	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000227157	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000227157	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000227157	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000227157	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000227157	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000227157	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000540430	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000540430	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000540430	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000540430	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000540430	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000540430	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000540430	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000379412	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000379412	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000379412	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000379412	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-3UTR	ENST00000379412	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000379412	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
3UTR-intron	ENST00000379412	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-3UTR	ENST00000542179	ENST00000341441		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-3UTR	ENST00000542179	ENST00000378576		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-3UTR	ENST00000542179	ENST00000416162		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-3UTR	ENST00000542179	ENST00000393187		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-3UTR	ENST00000542179	ENST00000223215		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-intron	ENST00000542179	ENST00000437945		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
intron-intron	ENST00000542179	ENST00000462132		ChiTaRS3.1			BG179712	LDHA	chr11	18429180	+	MEST	chr7	130145346	+
In-frame	ENST00000262971	ENST00000541773		ChiTaRS3.1			N32450	PIAS4	chr19	4013023	+	NID2	chr14	52486829	-
In-frame	ENST00000262971	ENST00000216286		ChiTaRS3.1			N32450	PIAS4	chr19	4013023	+	NID2	chr14	52486829	-
intron-3CDS	ENST00000596144	ENST00000541773		ChiTaRS3.1			N32450	PIAS4	chr19	4013023	+	NID2	chr14	52486829	-
intron-3CDS	ENST00000596144	ENST00000216286		ChiTaRS3.1			N32450	PIAS4	chr19	4013023	+	NID2	chr14	52486829	-
3UTR-3CDS	ENST00000367922	ENST00000397128		ChiTaRS3.1			BF081999	DDR2	chr1	162753497	+	PRKAA1	chr5	40765238	-
3UTR-3CDS	ENST00000367922	ENST00000354209		ChiTaRS3.1			BF081999	DDR2	chr1	162753497	+	PRKAA1	chr5	40765238	-
3UTR-intron	ENST00000367922	ENST00000296800		ChiTaRS3.1			BF081999	DDR2	chr1	162753497	+	PRKAA1	chr5	40765238	-
intron-3CDS	ENST00000367921	ENST00000397128		ChiTaRS3.1			BF081999	DDR2	chr1	162753497	+	PRKAA1	chr5	40765238	-
intron-3CDS	ENST00000367921	ENST00000354209		ChiTaRS3.1			BF081999	DDR2	chr1	162753497	+	PRKAA1	chr5	40765238	-
intron-intron	ENST00000367921	ENST00000296800		ChiTaRS3.1			BF081999	DDR2	chr1	162753497	+	PRKAA1	chr5	40765238	-
intron-5UTR	ENST00000336868	ENST00000374561		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000336868	ENST00000486541		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000577098	ENST00000374561		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000577098	ENST00000486541		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000575801	ENST00000374561		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000575801	ENST00000486541		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000538650	ENST00000374561		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000538650	ENST00000486541		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000537628	ENST00000374561		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000537628	ENST00000486541		ChiTaRS3.1			X66924	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000372014	ENST00000555360		ChiTaRS3.1			BF063279	MRPL14	chr6	44081640	+	ZBTB42	chr14	105269319	-
intron-3UTR	ENST00000372014	ENST00000342537		ChiTaRS3.1			BF063279	MRPL14	chr6	44081640	+	ZBTB42	chr14	105269319	-
intron-3CDS	ENST00000368715	ENST00000321356		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368715	ENST00000409769		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368715	ENST00000434813		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368715	ENST00000492793		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-3CDS	ENST00000481009	ENST00000321356		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000481009	ENST00000409769		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000481009	ENST00000434813		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000481009	ENST00000492793		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-3CDS	ENST00000354332	ENST00000321356		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000354332	ENST00000409769		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000354332	ENST00000434813		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000354332	ENST00000492793		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-3CDS	ENST00000368716	ENST00000321356		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368716	ENST00000409769		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368716	ENST00000434813		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368716	ENST00000492793		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-3CDS	ENST00000368714	ENST00000321356		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368714	ENST00000409769		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368714	ENST00000434813		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
intron-intron	ENST00000368714	ENST00000492793		ChiTaRS3.1			DA581660	S100A4	chr1	153516240	-	CLK1	chr2	201726495	-
5CDS-3UTR	ENST00000270142	ENST00000368096		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-3UTR	ENST00000270142	ENST00000368097		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-intron	ENST00000270142	ENST00000478033		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-intron	ENST00000270142	ENST00000320307		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-3UTR	ENST00000389995	ENST00000368096		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-3UTR	ENST00000389995	ENST00000368097		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-intron	ENST00000389995	ENST00000478033		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
5CDS-intron	ENST00000389995	ENST00000320307		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
3UTR-3UTR	ENST00000470944	ENST00000368096		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
3UTR-3UTR	ENST00000470944	ENST00000368097		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
3UTR-intron	ENST00000470944	ENST00000478033		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
3UTR-intron	ENST00000470944	ENST00000320307		ChiTaRS3.1			BU601876	SOD1	chr21	33039617	+	TAGLN2	chr1	159887962	-
intron-intron	ENST00000329152	ENST00000464356		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000329152	ENST00000348159		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000329152	ENST00000353795		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000329152	ENST00000340875		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000329152	ENST00000368240		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000329152	ENST00000360595		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000360342	ENST00000464356		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000360342	ENST00000348159		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000360342	ENST00000353795		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000360342	ENST00000340875		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000360342	ENST00000368240		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000360342	ENST00000360595		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000337576	ENST00000464356		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000337576	ENST00000348159		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000337576	ENST00000353795		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000337576	ENST00000340875		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000337576	ENST00000368240		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
intron-intron	ENST00000337576	ENST00000360595		ChiTaRS3.1			AV707545	LZTS3	chr20	3151913	-	MEF2D	chr1	156450709	-
Frame-shit	ENST00000358196	ENST00000395319		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000358196	ENST00000395321		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000358196	ENST00000226253		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000375272	ENST00000395319		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000375272	ENST00000395321		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000375272	ENST00000226253		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000344257	ENST00000395319		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000344257	ENST00000395321		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
Frame-shit	ENST00000344257	ENST00000226253		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
3UTR-3CDS	ENST00000429023	ENST00000395319		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
3UTR-3CDS	ENST00000429023	ENST00000395321		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
3UTR-3CDS	ENST00000429023	ENST00000226253		ChiTaRS3.1			DA078791	GAD1	chr2	171675153	+	ALDOC	chr17	26902481	-
intron-3UTR	ENST00000378137	ENST00000329153		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
intron-intron	ENST00000378137	ENST00000417684		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
intron-intron	ENST00000378137	ENST00000559832		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
3UTR-3UTR	ENST00000325718	ENST00000329153		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
3UTR-intron	ENST00000325718	ENST00000417684		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
3UTR-intron	ENST00000325718	ENST00000559832		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
intron-3UTR	ENST00000579179	ENST00000329153		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
intron-intron	ENST00000579179	ENST00000417684		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
intron-intron	ENST00000579179	ENST00000559832		ChiTaRS3.1			BE891461	MLLT6	chr17	36883807	+	PLEKHH1	chr14	68054521	+
intron-5UTR	ENST00000261891	ENST00000529163		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000261891	ENST00000394920		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000261891	ENST00000527914		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000261891	ENST00000262584		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000261891	ENST00000528957		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000457488	ENST00000529163		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000457488	ENST00000394920		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000457488	ENST00000527914		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000457488	ENST00000262584		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000457488	ENST00000528957		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558069	ENST00000529163		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558069	ENST00000394920		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558069	ENST00000527914		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558069	ENST00000262584		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558069	ENST00000528957		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558482	ENST00000529163		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558482	ENST00000394920		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558482	ENST00000527914		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558482	ENST00000262584		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-5UTR	ENST00000558482	ENST00000528957		ChiTaRS3.1			BQ330581	DAPK2	chr15	64241232	-	RPL8	chr8	146015787	-
intron-3CDS	ENST00000359943	ENST00000409304		ChiTaRS3.1			W30683	FAM3C	chr7	120990268	+	SERPINE2	chr2	224862936	+
intron-3CDS	ENST00000359943	ENST00000258405		ChiTaRS3.1			W30683	FAM3C	chr7	120990268	+	SERPINE2	chr2	224862936	+
intron-3CDS	ENST00000359943	ENST00000409840		ChiTaRS3.1			W30683	FAM3C	chr7	120990268	+	SERPINE2	chr2	224862936	+
intron-3CDS	ENST00000359943	ENST00000447280		ChiTaRS3.1			W30683	FAM3C	chr7	120990268	+	SERPINE2	chr2	224862936	+
Frame-shit	ENST00000379151	ENST00000263125		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000397176		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000539722		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000263125		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000397176		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000539722		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000263125		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000397176		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000539722		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000263125		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000397176		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000539722		ChiTaRS3.1			DB499980	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3UTR	ENST00000374980	ENST00000395648		ChiTaRS3.1			BM837359	EIF2S2	chr20	32693234	-	TP53I11	chr11	44956305	-
intron-3UTR	ENST00000374980	ENST00000308212		ChiTaRS3.1			BM837359	EIF2S2	chr20	32693234	-	TP53I11	chr11	44956305	-
intron-3UTR	ENST00000374980	ENST00000533940		ChiTaRS3.1			BM837359	EIF2S2	chr20	32693234	-	TP53I11	chr11	44956305	-
intron-3UTR	ENST00000374980	ENST00000525680		ChiTaRS3.1			BM837359	EIF2S2	chr20	32693234	-	TP53I11	chr11	44956305	-
intron-intron	ENST00000374980	ENST00000531130		ChiTaRS3.1			BM837359	EIF2S2	chr20	32693234	-	TP53I11	chr11	44956305	-
intron-intron	ENST00000374980	ENST00000531928		ChiTaRS3.1			BM837359	EIF2S2	chr20	32693234	-	TP53I11	chr11	44956305	-
intron-3CDS	ENST00000495222	ENST00000374518		ChiTaRS3.1			DB080871	OSCP1	chr1	36884591	-	BMS1	chr10	43287073	+
In-frame	ENST00000235532	ENST00000374518		ChiTaRS3.1			DB080871	OSCP1	chr1	36884591	-	BMS1	chr10	43287073	+
In-frame	ENST00000356637	ENST00000374518		ChiTaRS3.1			DB080871	OSCP1	chr1	36884591	-	BMS1	chr10	43287073	+
In-frame	ENST00000433045	ENST00000374518		ChiTaRS3.1			DB080871	OSCP1	chr1	36884591	-	BMS1	chr10	43287073	+
intron-3CDS	ENST00000315643	ENST00000374518		ChiTaRS3.1			DB080871	OSCP1	chr1	36884591	-	BMS1	chr10	43287073	+
intron-3CDS	ENST00000354267	ENST00000374518		ChiTaRS3.1			DB080871	OSCP1	chr1	36884591	-	BMS1	chr10	43287073	+
3UTR-3CDS	ENST00000534336	ENST00000413702		ChiTaRS3.1			BX487918	MALAT1	chr11	65266834	+	MUC7	chr4	71346885	+
3UTR-3CDS	ENST00000534336	ENST00000456088		ChiTaRS3.1			BX487918	MALAT1	chr11	65266834	+	MUC7	chr4	71346885	+
3UTR-3CDS	ENST00000534336	ENST00000304887		ChiTaRS3.1			BX487918	MALAT1	chr11	65266834	+	MUC7	chr4	71346885	+
3UTR-3UTR	ENST00000534336	ENST00000514512		ChiTaRS3.1			BX487918	MALAT1	chr11	65266834	+	MUC7	chr4	71346885	+
In-frame	ENST00000358598	ENST00000355710		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000358598	ENST00000340058		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000392711	ENST00000355710		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000392711	ENST00000340058		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000589228	ENST00000355710		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000589228	ENST00000340058		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000536854	ENST00000355710		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000536854	ENST00000340058		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000586397	ENST00000355710		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000586397	ENST00000340058		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000588188	ENST00000355710		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
In-frame	ENST00000588188	ENST00000340058		ChiTaRS3.1			L03357	PRKAR1A	chr17	66522054	+	RET	chr10	43612031	+
3UTR-3UTR	ENST00000451137	ENST00000361866		ChiTaRS3.1			CA420740	CYR61	chr1	86048850	-	COL6A1	chr21	47424290	-
3UTR-3UTR	ENST00000451137	ENST00000498614		ChiTaRS3.1			CA420740	CYR61	chr1	86048850	-	COL6A1	chr21	47424290	-
intron-3UTR	ENST00000480413	ENST00000361866		ChiTaRS3.1			CA420740	CYR61	chr1	86048850	-	COL6A1	chr21	47424290	-
intron-3UTR	ENST00000480413	ENST00000498614		ChiTaRS3.1			CA420740	CYR61	chr1	86048850	-	COL6A1	chr21	47424290	-
In-frame	ENST00000317173	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000317173	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000317173	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000317173	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000441698	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000441698	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000441698	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000441698	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000518255	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000518255	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000518255	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000518255	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000521209	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000521209	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000521209	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000521209	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000528246	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000528246	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000528246	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
In-frame	ENST00000528246	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000382490	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000382490	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000382490	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000382490	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000517594	ENST00000539888		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000517594	ENST00000535686		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000517594	ENST00000540564		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
intron-3CDS	ENST00000517594	ENST00000367619		ChiTaRS3.1			CB529586	MSRA	chr8	10285718	-	SOAT1	chr1	179318058	-
Frame-shit	ENST00000432126	ENST00000330909		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
Frame-shit	ENST00000432126	ENST00000402939		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
Frame-shit	ENST00000432126	ENST00000483466		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
Frame-shit	ENST00000432126	ENST00000497477		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
5CDS-5UTR	ENST00000432126	ENST00000470990		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
In-frame	ENST00000194118	ENST00000330909		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
In-frame	ENST00000194118	ENST00000402939		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
In-frame	ENST00000194118	ENST00000483466		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
In-frame	ENST00000194118	ENST00000497477		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
5CDS-5UTR	ENST00000194118	ENST00000470990		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
intron-3CDS	ENST00000506775	ENST00000330909		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
intron-3CDS	ENST00000506775	ENST00000402939		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
intron-3CDS	ENST00000506775	ENST00000483466		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
intron-3CDS	ENST00000506775	ENST00000497477		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
intron-5UTR	ENST00000506775	ENST00000470990		ChiTaRS3.1			BQ367408	KIAA0141	chr5	141318225	+	MAGI1	chr3	65456037	-
intron-3CDS	ENST00000336061	ENST00000216373		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
intron-3CDS	ENST00000336061	ENST00000543680		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
intron-intron	ENST00000336061	ENST00000555794		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
3UTR-3CDS	ENST00000542104	ENST00000216373		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
3UTR-3CDS	ENST00000542104	ENST00000543680		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
3UTR-intron	ENST00000542104	ENST00000555794		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
intron-3CDS	ENST00000540088	ENST00000216373		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
intron-3CDS	ENST00000540088	ENST00000543680		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
intron-intron	ENST00000540088	ENST00000555794		ChiTaRS3.1			AK129920	RASSF3	chr12	65089109	+	SOS2	chr14	50585374	-
intron-intron	ENST00000373803	ENST00000464615		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000373803	ENST00000265758		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000373803	ENST00000423166		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000373803	ENST00000423497		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000359675	ENST00000464615		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000359675	ENST00000265758		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000359675	ENST00000423166		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000359675	ENST00000423497		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000349004	ENST00000464615		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000349004	ENST00000265758		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000349004	ENST00000423166		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000349004	ENST00000423497		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000373773	ENST00000464615		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000373773	ENST00000265758		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000373773	ENST00000423166		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000373773	ENST00000423497		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000540765	ENST00000464615		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000540765	ENST00000265758		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-intron	ENST00000540765	ENST00000423166		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
intron-3UTR	ENST00000540765	ENST00000423497		ChiTaRS3.1			AF251054	NDRG3	chr20	35280670	-	WBSCR22	chr7	73112373	+
In-frame	ENST00000314117	ENST00000526589		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000527974		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000352231		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000341872		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000450372		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000366584		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000416919		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000323938		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000526634		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000314117	ENST00000525042		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000526589		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000527974		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000352231		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000341872		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000450372		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000366584		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000416919		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000323938		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000526634		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
In-frame	ENST00000454158	ENST00000525042		ChiTaRS3.1			DA386951	RELL1	chr4	37687820	-	LGALS8	chr1	236706060	+
intron-3UTR	ENST00000454189	ENST00000286298		ChiTaRS3.1			BE766381	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000398361	ENST00000286298		ChiTaRS3.1			BE766381	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000316715	ENST00000286298		ChiTaRS3.1			BE766381	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000493677	ENST00000286298		ChiTaRS3.1			BE766381	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000355135	ENST00000286298		ChiTaRS3.1			BE766381	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000356942	ENST00000286298		ChiTaRS3.1			BE766381	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
5CDS-intron	ENST00000358598	ENST00000330339		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000358598	ENST00000559187		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000392711	ENST00000330339		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000392711	ENST00000559187		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000589228	ENST00000330339		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000589228	ENST00000559187		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000536854	ENST00000330339		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000536854	ENST00000559187		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000586397	ENST00000330339		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000586397	ENST00000559187		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000588188	ENST00000330339		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
5CDS-intron	ENST00000588188	ENST00000559187		ChiTaRS3.1			BF965634	PRKAR1A	chr17	66521095	+	RPS17	chr15	83207655	-
intron-3UTR	ENST00000346693	ENST00000280557		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000346693	ENST00000455982		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000370377	ENST00000280557		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000370377	ENST00000455982		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000355149	ENST00000280557		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000355149	ENST00000455982		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000437787	ENST00000280557		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000437787	ENST00000455982		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000466436	ENST00000280557		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000466436	ENST00000455982		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000320893	ENST00000280557		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
intron-3UTR	ENST00000320893	ENST00000455982		ChiTaRS3.1			T35084	CD99L2	chrX	149936353	-	DENR	chr12	123254604	+
Frame-shit	ENST00000260970	ENST00000260970		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000260970	ENST00000409714		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000462903		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000448752		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000482772		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000409714	ENST00000260970		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
Frame-shit	ENST00000409714	ENST00000409714		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000462903		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000448752		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000482772		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000462903	ENST00000260970		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000462903	ENST00000409714		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000462903		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000448752		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000482772		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000448752	ENST00000260970		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
Frame-shit	ENST00000448752	ENST00000409714		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000462903		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000448752		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000482772		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-3CDS	ENST00000482772	ENST00000260970		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-3CDS	ENST00000482772	ENST00000409714		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000462903		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000448752		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000482772		ChiTaRS3.1			BU616569	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000330062	ENST00000320785		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
intron-intron	ENST00000330062	ENST00000573815		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
intron-3CDS	ENST00000539790	ENST00000320785		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
intron-intron	ENST00000539790	ENST00000573815		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
intron-3CDS	ENST00000559482	ENST00000320785		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
intron-intron	ENST00000559482	ENST00000573815		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
Frame-shit	ENST00000540499	ENST00000320785		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
5CDS-intron	ENST00000540499	ENST00000573815		ChiTaRS3.1			Z28531	IDH2	chr15	90627408	-	KIF1C	chr17	4927083	+
intron-intron	ENST00000329399	ENST00000592274		ChiTaRS3.1			BQ436606	PDLIM1	chr10	96997545	-	CACTIN-AS1	chr19	3610792	-
intron-intron	ENST00000477757	ENST00000592274		ChiTaRS3.1			BQ436606	PDLIM1	chr10	96997545	-	CACTIN-AS1	chr19	3610792	-
intron-intron	ENST00000540235	ENST00000419821		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000540235	ENST00000392533		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000540235	ENST00000537952		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000540235	ENST00000543709		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000540235	ENST00000536979		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393930	ENST00000419821		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393930	ENST00000392533		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393930	ENST00000537952		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393930	ENST00000543709		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393930	ENST00000536979		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393931	ENST00000419821		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393931	ENST00000392533		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393931	ENST00000537952		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393931	ENST00000543709		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000393931	ENST00000536979		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000310706	ENST00000419821		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000310706	ENST00000392533		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000310706	ENST00000537952		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000310706	ENST00000543709		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
intron-intron	ENST00000310706	ENST00000536979		ChiTaRS3.1			BI259138	JUP	chr17	39775752	-	TAOK3	chr12	118684142	+
3UTR-3CDS	ENST00000330165	ENST00000357156		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
3UTR-3UTR	ENST00000330165	ENST00000480759		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
3UTR-3UTR	ENST00000330165	ENST00000417166		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
3UTR-3UTR	ENST00000330165	ENST00000300469		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
3UTR-3UTR	ENST00000330165	ENST00000374846		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
intron-3CDS	ENST00000369307	ENST00000357156		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
intron-3UTR	ENST00000369307	ENST00000480759		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
intron-3UTR	ENST00000369307	ENST00000417166		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
intron-3UTR	ENST00000369307	ENST00000300469		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
intron-3UTR	ENST00000369307	ENST00000374846		ChiTaRS3.1			CR736380	RBM8A	chr1	145510258	+	DYNLRB1	chr20	33114114	+
intron-3CDS	ENST00000426732	ENST00000532489		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000426732	ENST00000391851		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000426732	ENST00000454376		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3UTR	ENST00000426732	ENST00000527866		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000453908	ENST00000532489		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000453908	ENST00000391851		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000453908	ENST00000454376		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3UTR	ENST00000453908	ENST00000527866		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000312808	ENST00000532489		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000312808	ENST00000391851		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000312808	ENST00000454376		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3UTR	ENST00000312808	ENST00000527866		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000505871	ENST00000532489		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000505871	ENST00000391851		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000505871	ENST00000454376		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3UTR	ENST00000505871	ENST00000527866		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000474766	ENST00000532489		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000474766	ENST00000391851		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000474766	ENST00000454376		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3UTR	ENST00000474766	ENST00000527866		ChiTaRS3.1			BE717907	SH3D21	chr1	36790212	+	PRMT1	chr19	50191439	+
intron-3CDS	ENST00000346693	ENST00000263377		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000346693	ENST00000371835		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000346693	ENST00000360016		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000346693	ENST00000602230		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-3CDS	ENST00000370377	ENST00000263377		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000370377	ENST00000371835		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000370377	ENST00000360016		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000370377	ENST00000602230		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-3CDS	ENST00000355149	ENST00000263377		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000355149	ENST00000371835		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000355149	ENST00000360016		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000355149	ENST00000602230		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-3CDS	ENST00000437787	ENST00000263377		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000437787	ENST00000371835		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000437787	ENST00000360016		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000437787	ENST00000602230		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-3CDS	ENST00000466436	ENST00000263377		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000466436	ENST00000371835		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000466436	ENST00000360016		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000466436	ENST00000602230		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-3CDS	ENST00000320893	ENST00000263377		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000320893	ENST00000371835		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000320893	ENST00000360016		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
intron-intron	ENST00000320893	ENST00000602230		ChiTaRS3.1			BU630212	CD99L2	chrX	149935064	+	BRD4	chr19	15355087	+
5CDS-intron	ENST00000534358	ENST00000378137		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000534358	ENST00000325718		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000534358	ENST00000579179		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000389506	ENST00000378137		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000389506	ENST00000325718		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000389506	ENST00000579179		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000354520	ENST00000378137		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000354520	ENST00000325718		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
5CDS-intron	ENST00000354520	ENST00000579179		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
3UTR-intron	ENST00000420751	ENST00000378137		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
3UTR-intron	ENST00000420751	ENST00000325718		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
3UTR-intron	ENST00000420751	ENST00000579179		ChiTaRS3.1			S72604	KMT2A	chr11	118352808	+	MLLT6	chr17	36873682	+
intron-intron	ENST00000398722	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398722	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398722	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000536736	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000536736	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000536736	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441551	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441551	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441551	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000300591	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000300591	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000300591	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398705	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398705	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398705	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000579038	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000579038	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000579038	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441893	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441893	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441893	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000582408	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000582408	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000582408	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398686	ENST00000496817		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398686	ENST00000368719		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398686	ENST00000368720		ChiTaRS3.1			BI008366	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
3UTR-intron	ENST00000313949	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000313949	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000313949	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000371098	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000371098	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-5UTR	ENST00000371098	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371075	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371075	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000371075	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371100	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371100	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000371100	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000371099	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000371099	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-5UTR	ENST00000371099	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371102	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371102	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000371102	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000464624	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000464624	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000464624	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000306120	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000306120	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-5UTR	ENST00000306120	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371095	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371095	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000371095	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371085	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000371085	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000371085	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000354359	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000354359	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000354359	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000265620	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-intron	ENST00000265620	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-5UTR	ENST00000265620	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
5CDS-intron	ENST00000306090	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
5CDS-intron	ENST00000306090	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
5CDS-5UTR	ENST00000306090	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000371081	ENST00000600118		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-intron	ENST00000371081	ENST00000601220		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
intron-5UTR	ENST00000371081	ENST00000312547		ChiTaRS3.1			BU789739	GNAS	chr20	57486236	+	CHMP2A	chr19	59066451	-
3UTR-3UTR	ENST00000289382	ENST00000392857		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-3UTR	ENST00000289382	ENST00000392858		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-3UTR	ENST00000289382	ENST00000535373		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-3UTR	ENST00000289382	ENST00000536575		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-3UTR	ENST00000289382	ENST00000540442		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-3UTR	ENST00000289382	ENST00000264169		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-3UTR	ENST00000289382	ENST00000542387		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
3UTR-intron	ENST00000289382	ENST00000488761		ChiTaRS3.1			CA311049	CNOT11	chr2	101886727	-	ORC4	chr2	148692969	+
intron-3CDS	ENST00000270625	ENST00000330062		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000270625	ENST00000539790		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000270625	ENST00000559482		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000270625	ENST00000540499		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-3CDS	ENST00000596873	ENST00000330062		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000596873	ENST00000539790		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000596873	ENST00000559482		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000596873	ENST00000540499		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-3CDS	ENST00000594493	ENST00000330062		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000594493	ENST00000539790		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000594493	ENST00000559482		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000594493	ENST00000540499		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-3CDS	ENST00000599561	ENST00000330062		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000599561	ENST00000539790		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000599561	ENST00000559482		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-intron	ENST00000599561	ENST00000540499		ChiTaRS3.1			U52144	RPS11	chr19	50002769	-	IDH2	chr15	90633860	-
intron-3UTR	ENST00000421182	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000421182	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000421182	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000357867	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000357867	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000357867	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000323926	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000323926	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000323926	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000336916	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000336916	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000336916	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000354785	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000354785	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000354785	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000357009	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000357009	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000357009	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000346544	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000346544	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000346544	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000345488	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000345488	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000345488	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000359671	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000359671	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000359671	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000446046	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000446046	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000446046	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000443816	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000443816	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000443816	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000432072	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000432072	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000432072	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000356005	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000356005	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000356005	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000490833	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000490833	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000490833	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000426059	ENST00000519728		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3UTR	ENST00000426059	ENST00000520220		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-intron	ENST00000426059	ENST00000420292		ChiTaRS3.1			CN419543	FN1	chr2	216248136	-	LYN	chr8	56922700	+
intron-3CDS	ENST00000557515	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3UTR	ENST00000557515	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-intron	ENST00000557515	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3CDS	ENST00000338631	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3UTR	ENST00000338631	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-intron	ENST00000338631	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3CDS	ENST00000357481	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3UTR	ENST00000357481	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-intron	ENST00000357481	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
In-frame	ENST00000605057	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
5CDS-3UTR	ENST00000605057	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
5CDS-intron	ENST00000605057	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3CDS	ENST00000457657	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3UTR	ENST00000457657	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-intron	ENST00000457657	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
In-frame	ENST00000262710	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
5CDS-3UTR	ENST00000262710	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
5CDS-intron	ENST00000262710	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3CDS	ENST00000397341	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3UTR	ENST00000397341	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-intron	ENST00000397341	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
In-frame	ENST00000555053	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
5CDS-3UTR	ENST00000555053	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
5CDS-intron	ENST00000555053	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3CDS	ENST00000555352	ENST00000216487		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3UTR	ENST00000555352	ENST00000418924		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-intron	ENST00000555352	ENST00000557762		ChiTaRS3.1			DA335910	ACIN1	chr14	23559191	-	RIN3	chr14	93081747	+
intron-3CDS	ENST00000253048	ENST00000306482		ChiTaRS3.1			AV752015	ZC3H4	chr19	47588333	-	PRL	chr6	22294687	-
intron-3CDS	ENST00000594019	ENST00000306482		ChiTaRS3.1			AV752015	ZC3H4	chr19	47588333	-	PRL	chr6	22294687	-
Frame-shit	ENST00000395146	ENST00000453744		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000394801		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000394803		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000394804		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000343106		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000321805		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000350435		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000338145		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000349311		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000504211		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000357194		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000505207		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000507845		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000502404		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000513098		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000453744		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000394801		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000394803		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000394804		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000343106		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000321805		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000350435		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000338145		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000349311		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000504211		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000357194		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000505207		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000507845		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000502404		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000513098		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000453744		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000394801		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000394803		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000394804		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000343106		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000321805		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000350435		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000338145		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000349311		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000504211		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000357194		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000505207		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000507845		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000502404		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000513098		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000453744		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000394801		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000394803		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000394804		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000343106		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000321805		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000350435		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000338145		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000349311		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000504211		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000357194		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000505207		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000507845		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000502404		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000513098		ChiTaRS3.1			AA057480	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3UTR	ENST00000399082	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399082	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399082	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399082	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399082	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399082	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000399079	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399079	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399079	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399079	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399079	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399079	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000374943	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000374943	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000374943	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000374943	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000374943	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000374943	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000434651	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434651	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434651	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434651	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434651	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434651	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000399084	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399084	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399084	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399084	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399084	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399084	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000460185	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000460185	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000460185	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000460185	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000460185	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000460185	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000383121	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383121	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383121	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383121	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383121	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383121	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000548953	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548953	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548953	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548953	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548953	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548953	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000434886	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434886	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434886	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434886	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434886	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000434886	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000430790	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000430790	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000430790	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000430790	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000430790	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000430790	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000416192	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000416192	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000416192	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000416192	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000416192	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000416192	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000399074	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399074	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399074	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399074	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399074	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399074	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000422950	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000422950	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000422950	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000422950	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000422950	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000422950	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000486521	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000486521	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000486521	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000486521	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000486521	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000486521	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000424530	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424530	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424530	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424530	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424530	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424530	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000433936	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000433936	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000433936	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000433936	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000433936	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000433936	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000399088	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399088	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399088	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399088	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399088	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399088	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000399065	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399065	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399065	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399065	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399065	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399065	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000413089	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000413089	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000413089	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000413089	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000413089	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000413089	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000476430	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000476430	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000476430	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000476430	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000476430	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000476430	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000383247	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383247	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383247	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383247	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383247	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000383247	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000399670	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399670	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399670	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399670	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399670	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000399670	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000551970	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000551970	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000551970	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000551970	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000551970	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000551970	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000415926	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000415926	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000415926	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000415926	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000415926	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000415926	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000428219	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000428219	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000428219	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000428219	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000428219	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000428219	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000419914	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000419914	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000419914	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000419914	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000419914	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000419914	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000421888	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000421888	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000421888	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000421888	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000421888	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000421888	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000424806	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424806	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424806	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424806	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424806	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000424806	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000547498	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000547498	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000547498	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000547498	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000547498	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000547498	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000493020	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000493020	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000493020	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000493020	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000493020	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000493020	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000414518	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000414518	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000414518	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000414518	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000414518	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000414518	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000549367	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000549367	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000549367	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000549367	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000549367	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000549367	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000548083	ENST00000261401		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548083	ENST00000541050		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548083	ENST00000549384		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548083	ENST00000421578		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548083	ENST00000420959		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-intron	ENST00000548083	ENST00000549772		ChiTaRS3.1			CA306961	HLA-DQB1	chr6	32629177	+	CORO1C	chr12	109039086	+
intron-3UTR	ENST00000446176	ENST00000340124		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000446176	ENST00000440783		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000420781	ENST00000340124		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000420781	ENST00000440783		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000355681	ENST00000340124		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000355681	ENST00000440783		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000443566	ENST00000340124		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000443566	ENST00000440783		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000478129	ENST00000340124		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000478129	ENST00000440783		ChiTaRS3.1			AA449654	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-intron	ENST00000392138	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000599227		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000269829		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000594384		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596597		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596825		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000333581		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000599953		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596652		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000600044		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000600220		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596929		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000595981		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000415203		ChiTaRS3.1			BC029468	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-3CDS	ENST00000532456	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3UTR	ENST00000532456	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-intron	ENST00000532456	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3CDS	ENST00000539648	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3UTR	ENST00000539648	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-intron	ENST00000539648	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3CDS	ENST00000528499	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3UTR	ENST00000528499	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-intron	ENST00000528499	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-3CDS	ENST00000263574	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-3UTR	ENST00000263574	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-intron	ENST00000263574	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3CDS	ENST00000345598	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3UTR	ENST00000345598	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-intron	ENST00000345598	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3CDS	ENST00000338167	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-3UTR	ENST00000338167	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-intron	ENST00000338167	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-3CDS	ENST00000278756	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-3UTR	ENST00000278756	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-intron	ENST00000278756	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-3CDS	ENST00000543137	ENST00000396432		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-3UTR	ENST00000543137	ENST00000320481		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
3UTR-intron	ENST00000543137	ENST00000493154		ChiTaRS3.1			BQ309101	APLP2	chr11	130014471	+	ARHGAP21	chr10	24874976	-
intron-intron	ENST00000355619	ENST00000588705		ChiTaRS3.1			BG291321	FBXL3	chr13	77580631	-	IER3IP1	chr18	44702716	-
intron-5UTR	ENST00000355619	ENST00000256433		ChiTaRS3.1			BG291321	FBXL3	chr13	77580631	-	IER3IP1	chr18	44702716	-
intron-intron	ENST00000477982	ENST00000588705		ChiTaRS3.1			BG291321	FBXL3	chr13	77580631	-	IER3IP1	chr18	44702716	-
intron-5UTR	ENST00000477982	ENST00000256433		ChiTaRS3.1			BG291321	FBXL3	chr13	77580631	-	IER3IP1	chr18	44702716	-
intron-3CDS	ENST00000205557	ENST00000370250		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000205557	ENST00000517724		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000205557	ENST00000210633		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000205557	ENST00000519756		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-3CDS	ENST00000574094	ENST00000370250		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000574094	ENST00000517724		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000574094	ENST00000210633		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000574094	ENST00000519756		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-3CDS	ENST00000575728	ENST00000370250		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000575728	ENST00000517724		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000575728	ENST00000210633		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
intron-intron	ENST00000575728	ENST00000519756		ChiTaRS3.1			W79014	ABCC6	chr16	16249341	-	SEMA4G	chr10	102743741	+
5CDS-3UTR	ENST00000361682	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000361682	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000361682	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-3UTR	ENST00000403184	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000403184	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000403184	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-3UTR	ENST00000403710	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000403710	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000403710	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-3UTR	ENST00000407537	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000407537	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000407537	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-3UTR	ENST00000406520	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000406520	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000406520	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-3UTR	ENST00000449653	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000449653	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
5CDS-intron	ENST00000449653	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
3UTR-3UTR	ENST00000493893	ENST00000273598		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
3UTR-intron	ENST00000493893	ENST00000436744		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
3UTR-intron	ENST00000493893	ENST00000422593		ChiTaRS3.1			CB529248	COMT	chr22	19951714	-	NICN1	chr3	49461613	+
In-frame	ENST00000331825	ENST00000336023		ChiTaRS3.1			H93515	FTL	chr19	49468779	+	TUBA1B	chr12	49522573	-
intron-3CDS	ENST00000535601	ENST00000357389		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-3CDS	ENST00000535601	ENST00000327773		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000535601	ENST00000476291		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000535601	ENST00000418959		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000535601	ENST00000450766		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000535601	ENST00000355761		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-3CDS	ENST00000218364	ENST00000357389		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-3CDS	ENST00000218364	ENST00000327773		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000218364	ENST00000476291		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000218364	ENST00000418959		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000218364	ENST00000450766		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-intron	ENST00000218364	ENST00000355761		ChiTaRS3.1			BM689183	HTATSF1	chrX	135586281	+	GAS6	chr13	114526421	-
intron-3CDS	ENST00000333762	ENST00000332499		ChiTaRS3.1			AV705114	H1FX	chr3	129035034	-	HEXIM1	chr17	43227547	+
intron-intron	ENST00000394936	ENST00000419277		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000428995		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000463066		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000443117		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000551196		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000480521		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000415247		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000484255		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000454805		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000549300		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000475500		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000374808		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000552158		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000488565		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000383224		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000551933		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000474244		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000422504		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000550806		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000494775		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000515317		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000550456		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394936	ENST00000502285		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000419277		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000428995		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000463066		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000443117		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000551196		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000480521		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000415247		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000484255		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000454805		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000549300		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000475500		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000374808		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000552158		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000488565		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000383224		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000551933		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000474244		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000422504		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000550806		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000494775		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000515317		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000550456		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
intron-intron	ENST00000394934	ENST00000502285		ChiTaRS3.1			CD370612	PSAP	chr10	73576222	+	HLA-DPA1	chr6	4517338	+
In-frame	ENST00000307602	ENST00000355710		ChiTaRS3.1			DQ104207	HOOK3	chr8	42823358	+	RET	chr10	43612030	+
In-frame	ENST00000307602	ENST00000340058		ChiTaRS3.1			DQ104207	HOOK3	chr8	42823358	+	RET	chr10	43612030	+
intron-3CDS	ENST00000524839	ENST00000355710		ChiTaRS3.1			DQ104207	HOOK3	chr8	42823358	+	RET	chr10	43612030	+
intron-3CDS	ENST00000524839	ENST00000340058		ChiTaRS3.1			DQ104207	HOOK3	chr8	42823358	+	RET	chr10	43612030	+
intron-3CDS	ENST00000244766	ENST00000368378		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000244766	ENST00000541576		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000244766	ENST00000457183		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000244766	ENST00000541990		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-intron	ENST00000244766	ENST00000486260		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000495850	ENST00000368378		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000495850	ENST00000541576		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000495850	ENST00000457183		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-3CDS	ENST00000495850	ENST00000541990		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
intron-intron	ENST00000495850	ENST00000486260		ChiTaRS3.1			BQ014617	NRN1	chr6	5998601	+	THBS3	chr1	155167984	+
5UTR-intron	ENST00000338244	ENST00000338244		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000338244	ENST00000379333		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000338244	ENST00000424750		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000338244	ENST00000468355		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000338244		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000379333		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000424750		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000468355		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000338244		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000379333		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000424750		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000468355		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000338244		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000379333		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000424750		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000468355		ChiTaRS3.1			BC093087	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
intron-intron	ENST00000323798	ENST00000378372		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000323798	ENST00000493863		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000323798	ENST00000437161		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000263276	ENST00000378372		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000263276	ENST00000493863		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000263276	ENST00000437161		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000541188	ENST00000378372		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000541188	ENST00000493863		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000541188	ENST00000437161		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000544287	ENST00000378372		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000544287	ENST00000493863		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000544287	ENST00000437161		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000540532	ENST00000378372		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000540532	ENST00000493863		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000540532	ENST00000437161		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000457974	ENST00000378372		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000457974	ENST00000493863		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
intron-intron	ENST00000457974	ENST00000437161		ChiTaRS3.1			AI091299	GYS1	chr19	49471592	+	HSPA14	chr10	14885515	-
3UTR-3UTR	ENST00000276603	ENST00000228506		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000412616		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000535413		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3UTR	ENST00000276602	ENST00000228506		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000412616		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000535413		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000520783	ENST00000228506		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000412616		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000535413		ChiTaRS3.1			AI962170	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3CDS	ENST00000372523	ENST00000527438		ChiTaRS3.1			AK026450	ZSWIM1	chr20	44512944	+	DGAT1	chr8	145540916	-
3UTR-3CDS	ENST00000372523	ENST00000332324		ChiTaRS3.1			AK026450	ZSWIM1	chr20	44512944	+	DGAT1	chr8	145540916	-
3UTR-intron	ENST00000372523	ENST00000531896		ChiTaRS3.1			AK026450	ZSWIM1	chr20	44512944	+	DGAT1	chr8	145540916	-
3UTR-3CDS	ENST00000372520	ENST00000527438		ChiTaRS3.1			AK026450	ZSWIM1	chr20	44512944	+	DGAT1	chr8	145540916	-
3UTR-3CDS	ENST00000372520	ENST00000332324		ChiTaRS3.1			AK026450	ZSWIM1	chr20	44512944	+	DGAT1	chr8	145540916	-
3UTR-intron	ENST00000372520	ENST00000531896		ChiTaRS3.1			AK026450	ZSWIM1	chr20	44512944	+	DGAT1	chr8	145540916	-
intron-3CDS	ENST00000265734	ENST00000419336		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000265734	ENST00000241069		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000265734	ENST00000428317		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000265734	ENST00000302913		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000265734	ENST00000412389		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000265734	ENST00000411582		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-intron	ENST00000265734	ENST00000497647		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000424848	ENST00000419336		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000424848	ENST00000241069		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000424848	ENST00000428317		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000424848	ENST00000302913		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000424848	ENST00000412389		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000424848	ENST00000411582		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-intron	ENST00000424848	ENST00000497647		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000491250	ENST00000419336		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000491250	ENST00000241069		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000491250	ENST00000428317		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000491250	ENST00000302913		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000491250	ENST00000412389		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-3CDS	ENST00000491250	ENST00000411582		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
intron-intron	ENST00000491250	ENST00000497647		ChiTaRS3.1			R96128	CDK6	chr7	92331061	-	ACHE	chr7	100490803	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM491361	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM491361	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
In-frame	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM491361	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM491361	BCR	chr22	23524430	+	ABL1	chr9	133730185	+
5UTR-intron	ENST00000281938	ENST00000392951		ChiTaRS3.1			CB962711	HSPB8	chr12	119616904	+	TAGLN	chr11	117075355	+
5UTR-3UTR	ENST00000281938	ENST00000530649		ChiTaRS3.1			CB962711	HSPB8	chr12	119616904	+	TAGLN	chr11	117075355	+
5UTR-3UTR	ENST00000281938	ENST00000532870		ChiTaRS3.1			CB962711	HSPB8	chr12	119616904	+	TAGLN	chr11	117075355	+
intron-intron	ENST00000542496	ENST00000392951		ChiTaRS3.1			CB962711	HSPB8	chr12	119616904	+	TAGLN	chr11	117075355	+
intron-3UTR	ENST00000542496	ENST00000530649		ChiTaRS3.1			CB962711	HSPB8	chr12	119616904	+	TAGLN	chr11	117075355	+
intron-3UTR	ENST00000542496	ENST00000532870		ChiTaRS3.1			CB962711	HSPB8	chr12	119616904	+	TAGLN	chr11	117075355	+
intron-intron	ENST00000339859	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000339859	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000339859	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000408019	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000408019	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000408019	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000428547	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000428547	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000428547	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000394811	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000394811	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000394811	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000497106	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000497106	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000497106	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000422491	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000422491	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000422491	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000319786	ENST00000544892		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3UTR	ENST00000319786	ENST00000320031		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-intron	ENST00000319786	ENST00000007722		ChiTaRS3.1			BF807982	USP54	chr10	75276575	-	ITGA3	chr17	48167434	+
intron-3CDS	ENST00000549987	ENST00000358823		ChiTaRS3.1			T28049	CHURC1-FNTB	chr14	65453815	+	CAMSAP2	chr1	200729965	+
intron-3CDS	ENST00000549987	ENST00000413307		ChiTaRS3.1			T28049	CHURC1-FNTB	chr14	65453815	+	CAMSAP2	chr1	200729965	+
intron-3CDS	ENST00000549987	ENST00000236925		ChiTaRS3.1			T28049	CHURC1-FNTB	chr14	65453815	+	CAMSAP2	chr1	200729965	+
5CDS-intron	ENST00000274963	ENST00000377795		ChiTaRS3.1			DA944565	FGD2	chr6	36976780	+	CD74	chr5	149784194	-
5CDS-intron	ENST00000274963	ENST00000353334		ChiTaRS3.1			DA944565	FGD2	chr6	36976780	+	CD74	chr5	149784194	-
5CDS-intron	ENST00000274963	ENST00000524315		ChiTaRS3.1			DA944565	FGD2	chr6	36976780	+	CD74	chr5	149784194	-
5CDS-intron	ENST00000274963	ENST00000009530		ChiTaRS3.1			DA944565	FGD2	chr6	36976780	+	CD74	chr5	149784194	-
intron-3CDS	ENST00000483366	ENST00000372692		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000483366	ENST00000409104		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000483366	ENST00000322030		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000483366	ENST00000372688		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-intron	ENST00000483366	ENST00000477806		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000379458	ENST00000372692		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000379458	ENST00000409104		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000379458	ENST00000322030		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-3CDS	ENST00000379458	ENST00000372688		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
intron-intron	ENST00000379458	ENST00000477806		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
3UTR-3CDS	ENST00000319509	ENST00000372692		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
3UTR-3CDS	ENST00000319509	ENST00000409104		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
3UTR-3CDS	ENST00000319509	ENST00000322030		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
3UTR-3CDS	ENST00000319509	ENST00000372688		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
3UTR-intron	ENST00000319509	ENST00000477806		ChiTaRS3.1			BF084337	MUC3A	chr7	100610997	+	SET	chr9	131456921	+
Frame-shit	ENST00000281129	ENST00000557342		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000281129	ENST00000238688		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000281129	ENST00000557623		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000281129	ENST00000557431		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000555265	ENST00000557342		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000555265	ENST00000238688		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000555265	ENST00000557623		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000555265	ENST00000557431		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000216517	ENST00000557342		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000216517	ENST00000238688		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000216517	ENST00000557623		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000216517	ENST00000557431		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000327841	ENST00000557342		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000327841	ENST00000238688		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000327841	ENST00000557623		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000327841	ENST00000557431		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000553717	ENST00000557342		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000553717	ENST00000238688		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000553717	ENST00000557623		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
intron-3CDS	ENST00000553717	ENST00000557431		ChiTaRS3.1			BG209671	CEP128	chr14	81209417	-	SLIRP	chr14	78177179	+
Frame-shit	ENST00000331825	ENST00000355754		ChiTaRS3.1			BU166365	FTL	chr19	49468813	+	GBP4	chr1	89662907	-
5CDS-intron	ENST00000331825	ENST00000471938		ChiTaRS3.1			BU166365	FTL	chr19	49468813	+	GBP4	chr1	89662907	-
5CDS-intron	ENST00000400485	ENST00000234310		ChiTaRS3.1			BM549676	MORC3	chr21	37713757	+	PPP3R1	chr2	68451693	-
5CDS-intron	ENST00000400485	ENST00000409752		ChiTaRS3.1			BM549676	MORC3	chr21	37713757	+	PPP3R1	chr2	68451693	-
5CDS-intron	ENST00000400485	ENST00000409377		ChiTaRS3.1			BM549676	MORC3	chr21	37713757	+	PPP3R1	chr2	68451693	-
3UTR-intron	ENST00000487909	ENST00000234310		ChiTaRS3.1			BM549676	MORC3	chr21	37713757	+	PPP3R1	chr2	68451693	-
3UTR-intron	ENST00000487909	ENST00000409752		ChiTaRS3.1			BM549676	MORC3	chr21	37713757	+	PPP3R1	chr2	68451693	-
3UTR-intron	ENST00000487909	ENST00000409377		ChiTaRS3.1			BM549676	MORC3	chr21	37713757	+	PPP3R1	chr2	68451693	-
intron-5UTR	ENST00000380252	ENST00000533603		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000380252	ENST00000358171		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000380252	ENST00000530284		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-intron	ENST00000380252	ENST00000524558		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-intron	ENST00000380252	ENST00000525876		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000380259	ENST00000533603		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000380259	ENST00000358171		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000380259	ENST00000530284		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-intron	ENST00000380259	ENST00000524558		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-intron	ENST00000380259	ENST00000525876		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000336906	ENST00000533603		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000336906	ENST00000358171		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-5UTR	ENST00000336906	ENST00000530284		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-intron	ENST00000336906	ENST00000524558		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
intron-intron	ENST00000336906	ENST00000525876		ChiTaRS3.1			DA730707	HBG2	chr11	5634132	+	SERPINH1	chr11	75273298	+
3UTR-intron	ENST00000216361	ENST00000204726		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000450791		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000456883		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000537452		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000545875		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000534967		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000204726		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000450791		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000456883		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000537452		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000545875		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000534967		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000204726		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000450791		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000456883		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000537452		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000545875		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000534967		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000204726		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000450791		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000456883		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000537452		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000545875		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000534967		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000204726		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000450791		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000456883		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000537452		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000545875		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000534967		ChiTaRS3.1			DV459462	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
5CDS-intron	ENST00000380252	ENST00000371627		ChiTaRS3.1			BF240319	HBG2	chr11	5526580	-	TNKS2	chr10	93567204	-
intron-intron	ENST00000380259	ENST00000371627		ChiTaRS3.1			BF240319	HBG2	chr11	5526580	-	TNKS2	chr10	93567204	-
intron-intron	ENST00000336906	ENST00000371627		ChiTaRS3.1			BF240319	HBG2	chr11	5526580	-	TNKS2	chr10	93567204	-
intron-3UTR	ENST00000267485	ENST00000327040		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000267485	ENST00000440756		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000267485	ENST00000286485		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000267485	ENST00000428502		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000267485	ENST00000523619		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-intron	ENST00000267485	ENST00000520789		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000334342	ENST00000327040		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000334342	ENST00000440756		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000334342	ENST00000286485		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000334342	ENST00000428502		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000334342	ENST00000523619		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-intron	ENST00000334342	ENST00000520789		ChiTaRS3.1			BM719820	C14orf37	chr14	58733443	-	PSD3	chr8	18388317	-
intron-3UTR	ENST00000327892	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000435534	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000330914	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000396389	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000396384	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000421473	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000549614	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000413547	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000419551	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000454620	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000422674	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000548023	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000435546	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000420400	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000453350	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000419792	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000547690	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000436335	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000425136	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000444441	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000422650	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000547695	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000454454	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000412136	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000446385	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000383564	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000551208	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000400531	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000400534	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000400530	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000436628	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000549902	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000437490	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000426754	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000425102	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
3UTR-3UTR	ENST00000432462	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-3UTR	ENST00000549654	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
3UTR-3UTR	ENST00000427480	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
3UTR-3UTR	ENST00000424734	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
3UTR-3UTR	ENST00000420618	ENST00000370355		ChiTaRS3.1			BE695571	TUBB	chr6	2025100	+	SCD	chr10	102120708	+
intron-intron	ENST00000553896	ENST00000342085		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
intron-intron	ENST00000553896	ENST00000441549		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
intron-intron	ENST00000553896	ENST00000268673		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
intron-intron	ENST00000553896	ENST00000354836		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
intron-intron	ENST00000553896	ENST00000389224		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
intron-intron	ENST00000553896	ENST00000471311		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000250383	ENST00000342085		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000250383	ENST00000441549		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000250383	ENST00000268673		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000250383	ENST00000354836		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000250383	ENST00000389224		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000250383	ENST00000471311		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000344777	ENST00000342085		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000344777	ENST00000441549		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000344777	ENST00000268673		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000344777	ENST00000354836		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000344777	ENST00000389224		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5UTR-intron	ENST00000344777	ENST00000471311		ChiTaRS3.1			BP238076	DHRS2	chr14	24105981	+	PDPK1	chr16	2692491	-
5CDS-intron	ENST00000311528	ENST00000337774		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000311528	ENST00000296280		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000311528	ENST00000392472		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000311528	ENST00000495249		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000311528	ENST00000169293		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000311528	ENST00000392470		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000567815	ENST00000337774		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000567815	ENST00000296280		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000567815	ENST00000392472		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000567815	ENST00000495249		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000567815	ENST00000169293		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000567815	ENST00000392470		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-intron	ENST00000452368	ENST00000337774		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-intron	ENST00000452368	ENST00000296280		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-intron	ENST00000452368	ENST00000392472		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-intron	ENST00000452368	ENST00000495249		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-intron	ENST00000452368	ENST00000169293		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-intron	ENST00000452368	ENST00000392470		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000393099	ENST00000337774		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000393099	ENST00000296280		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000393099	ENST00000392472		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000393099	ENST00000495249		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000393099	ENST00000169293		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
5CDS-intron	ENST00000393099	ENST00000392470		ChiTaRS3.1			BG331404	RPL13	chr16	89628148	+	MASP1	chr3	186994641	-
intron-3CDS	ENST00000441750	ENST00000380338		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000441750	ENST00000355930		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000441750	ENST00000429426		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000441750	ENST00000475957		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000441750	ENST00000380321		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-3CDS	ENST00000281513	ENST00000380338		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000281513	ENST00000355930		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000281513	ENST00000429426		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000281513	ENST00000475957		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-5UTR	ENST00000281513	ENST00000380321		ChiTaRS3.1			EF406122	NBAS	chr2	14539776	+	MLLT3	chr9	20363607	-
intron-3UTR	ENST00000382038	ENST00000263277		ChiTaRS3.1			BG496857	RAD1	chr5	34915864	+	EHD2	chr19	48245349	+
intron-intron	ENST00000382038	ENST00000538399		ChiTaRS3.1			BG496857	RAD1	chr5	34915864	+	EHD2	chr19	48245349	+
intron-intron	ENST00000382038	ENST00000540884		ChiTaRS3.1			BG496857	RAD1	chr5	34915864	+	EHD2	chr19	48245349	+
intron-3UTR	ENST00000341754	ENST00000263277		ChiTaRS3.1			BG496857	RAD1	chr5	34915864	+	EHD2	chr19	48245349	+
intron-intron	ENST00000341754	ENST00000538399		ChiTaRS3.1			BG496857	RAD1	chr5	34915864	+	EHD2	chr19	48245349	+
intron-intron	ENST00000341754	ENST00000540884		ChiTaRS3.1			BG496857	RAD1	chr5	34915864	+	EHD2	chr19	48245349	+
intron-3UTR	ENST00000261699	ENST00000361566		ChiTaRS3.1			BE908214	L2HGDH	chr14	50712522	-	KRT19	chr17	39679922	-
intron-3UTR	ENST00000267436	ENST00000361566		ChiTaRS3.1			BE908214	L2HGDH	chr14	50712522	-	KRT19	chr17	39679922	-
intron-3UTR	ENST00000421284	ENST00000361566		ChiTaRS3.1			BE908214	L2HGDH	chr14	50712522	-	KRT19	chr17	39679922	-
intron-3UTR	ENST00000555423	ENST00000361566		ChiTaRS3.1			BE908214	L2HGDH	chr14	50712522	-	KRT19	chr17	39679922	-
intron-3UTR	ENST00000555610	ENST00000361566		ChiTaRS3.1			BE908214	L2HGDH	chr14	50712522	-	KRT19	chr17	39679922	-
intron-3UTR	ENST00000556393	ENST00000361566		ChiTaRS3.1			BE908214	L2HGDH	chr14	50712522	-	KRT19	chr17	39679922	-
5CDS-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
3UTR-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
3UTR-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
3UTR-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
3UTR-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			L22179	KMT2A	chr11	118355029	+	AFF1	chr4	88005264	+
intron-3UTR	ENST00000422405	ENST00000519937		ChiTaRS3.1			AK290699	EDNRB-AS1	chr13	78472138	-	SFTPB	chr2	85886299	-
intron-3UTR	ENST00000422405	ENST00000342375		ChiTaRS3.1			AK290699	EDNRB-AS1	chr13	78472138	-	SFTPB	chr2	85886299	-
intron-3UTR	ENST00000422405	ENST00000393822		ChiTaRS3.1			AK290699	EDNRB-AS1	chr13	78472138	-	SFTPB	chr2	85886299	-
intron-intron	ENST00000422405	ENST00000409383		ChiTaRS3.1			AK290699	EDNRB-AS1	chr13	78472138	-	SFTPB	chr2	85886299	-
5CDS-intron	ENST00000301178	ENST00000481781		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
5CDS-intron	ENST00000301178	ENST00000397270		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
5CDS-intron	ENST00000359092	ENST00000481781		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
5CDS-intron	ENST00000359092	ENST00000397270		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
intron-intron	ENST00000594880	ENST00000481781		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
intron-intron	ENST00000594880	ENST00000397270		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
5CDS-intron	ENST00000593513	ENST00000481781		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
5CDS-intron	ENST00000593513	ENST00000397270		ChiTaRS3.1			CN404744	AXL	chr19	41744458	+	INS-IGF2	chr11	2154253	-
intron-intron	ENST00000249269	ENST00000254908		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000249269	ENST00000512783		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000249269	ENST00000510013		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000428154	ENST00000254908		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000428154	ENST00000512783		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000428154	ENST00000510013		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000420236	ENST00000254908		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000420236	ENST00000512783		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-intron	ENST00000420236	ENST00000510013		ChiTaRS3.1			BE709389	PMPCB	chr7	102967760	+	PCBD2	chr5	134262823	-
intron-3CDS	ENST00000360863	ENST00000541669		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000360863	ENST00000280704		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000360863	ENST00000544105		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000360863	ENST00000536880		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000360863	ENST00000535809		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000360863	ENST00000537486		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000360863	ENST00000546146		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000523287	ENST00000541669		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000523287	ENST00000280704		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523287	ENST00000544105		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523287	ENST00000536880		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523287	ENST00000535809		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523287	ENST00000537486		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523287	ENST00000546146		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000523437	ENST00000541669		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000523437	ENST00000280704		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523437	ENST00000544105		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523437	ENST00000536880		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523437	ENST00000535809		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523437	ENST00000537486		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000523437	ENST00000546146		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000519421	ENST00000541669		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3CDS	ENST00000519421	ENST00000280704		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000519421	ENST00000544105		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000519421	ENST00000536880		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000519421	ENST00000535809		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000519421	ENST00000537486		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-3UTR	ENST00000519421	ENST00000546146		ChiTaRS3.1			BU569321	RGS22	chr8	100990196	-	LDHC	chr11	18472647	+
intron-intron	ENST00000496817	ENST00000354293		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000496817	ENST00000600199		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000496817	ENST00000359032		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000368719	ENST00000354293		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000368719	ENST00000600199		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000368719	ENST00000359032		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000368720	ENST00000354293		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000368720	ENST00000600199		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-intron	ENST00000368720	ENST00000359032		ChiTaRS3.1			AI913893	S100A6	chr1	153507176	+	AP2A1	chr19	50306259	-
intron-3CDS	ENST00000505330	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000505330	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000505330	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000505330	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000505330	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000504381	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000504381	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000504381	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000504381	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000504381	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000507488	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000507488	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000507488	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000507488	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000507488	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000393221	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000393221	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000393221	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000393221	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000393221	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000533801	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000533801	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000533801	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000533801	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000533801	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-3CDS	ENST00000510168	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000510168	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000510168	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-intron	ENST00000510168	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000510168	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-3CDS	ENST00000508532	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000508532	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000508532	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-intron	ENST00000508532	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000508532	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-3CDS	ENST00000504948	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000504948	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000504948	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-intron	ENST00000504948	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000504948	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-3CDS	ENST00000513801	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000513801	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000513801	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-intron	ENST00000513801	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
5UTR-5UTR	ENST00000513801	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000328560	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000328560	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000328560	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000328560	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000328560	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000428331	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000428331	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000428331	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000428331	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000428331	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000359644	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000359644	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000359644	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000359644	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000359644	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000422190	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000422190	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000422190	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000422190	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000422190	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-3CDS	ENST00000509150	ENST00000355377		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000509150	ENST00000562034		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000509150	ENST00000562711		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-intron	ENST00000509150	ENST00000568433		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
intron-5UTR	ENST00000509150	ENST00000568115		ChiTaRS3.1			BE792646	ATP2C1	chr3	130613182	+	SYT17	chr16	19191712	+
Frame-shit	ENST00000367287	ENST00000394609		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000405240		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000357376		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000317610		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000357732		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000337526		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000394611		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
Frame-shit	ENST00000367287	ENST00000404909		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
5CDS-intron	ENST00000367287	ENST00000486085		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
5CDS-intron	ENST00000367287	ENST00000354474		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
5CDS-intron	ENST00000367287	ENST00000402434		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000394609		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000405240		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000357376		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000317610		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000357732		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000337526		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000394611		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-3CDS	ENST00000482943	ENST00000404909		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-intron	ENST00000482943	ENST00000486085		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-intron	ENST00000482943	ENST00000354474		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-intron	ENST00000482943	ENST00000402434		ChiTaRS3.1			CK001143	TIMM17A	chr1	201924680	+	RTN4	chr2	55201901	-
intron-intron	ENST00000268483	ENST00000556679		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000456570		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000477310		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000425368		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000497841		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000417261		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000427888		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000459734		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000455591		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000433503		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000474621		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000424727		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000436692		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000473139		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000399981		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000419920		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000465211		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000375455		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000489605		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000426239		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000419411		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000268483	ENST00000460958		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000556679		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000456570		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000477310		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000425368		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000497841		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000417261		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000427888		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000459734		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000455591		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000433503		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000474621		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000424727		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000436692		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000473139		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000399981		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000419920		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000465211		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000375455		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000489605		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000426239		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000419411		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000423037	ENST00000460958		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000556679		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000456570		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000477310		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000425368		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000497841		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000417261		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000427888		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000459734		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000455591		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000433503		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000474621		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000424727		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000436692		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000473139		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000399981		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000419920		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000465211		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000375455		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000489605		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000426239		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000419411		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-intron	ENST00000426362	ENST00000460958		ChiTaRS3.1			BC007464	TXNL4B	chr16	72093066	+	CFB	chr6	3251654	+
intron-3CDS	ENST00000449833	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000449833	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000449833	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000409161	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000409161	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000409161	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000423696	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000423696	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000423696	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000338508	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000338508	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000338508	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000409530	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000409530	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000409530	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000449116	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000449116	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000449116	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000357171	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000357171	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000357171	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000468619	ENST00000397933		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000468619	ENST00000473835		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-3CDS	ENST00000468619	ENST00000493598		ChiTaRS3.1			BE182878	SHANK2	chr11	70530762	+	U2SURP	chr3	142757735	+
intron-5UTR	ENST00000427662	ENST00000240587		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000427662	ENST00000558569		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000369774	ENST00000240587		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000369774	ENST00000558569		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000355946	ENST00000240587		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000355946	ENST00000558569		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000315994	ENST00000240587		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000315994	ENST00000558569		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000540321	ENST00000240587		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000540321	ENST00000558569		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000538130	ENST00000240587		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-5UTR	ENST00000538130	ENST00000558569		ChiTaRS3.1			BX098920	SH3PXD2A	chr10	105426617	-	TSHZ3	chr19	31840147	-
intron-intron	ENST00000548946	ENST00000548946		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000548946	ENST00000318066		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000548946	ENST00000550657		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000548946	ENST00000549833		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000548946	ENST00000552442		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000318066	ENST00000548946		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000318066	ENST00000318066		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000318066	ENST00000550657		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000318066	ENST00000549833		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000318066	ENST00000552442		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000550657	ENST00000548946		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000550657	ENST00000318066		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000550657	ENST00000550657		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000550657	ENST00000549833		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000550657	ENST00000552442		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000549833	ENST00000548946		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000549833	ENST00000318066		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000549833	ENST00000550657		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000549833	ENST00000549833		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000549833	ENST00000552442		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000552442	ENST00000548946		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000552442	ENST00000318066		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-3UTR	ENST00000552442	ENST00000550657		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000552442	ENST00000549833		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000552442	ENST00000552442		ChiTaRS3.1			AI031822	UBE2N	chr12	93803197	+	UBE2N	chr12	93802268	+
intron-intron	ENST00000599539	ENST00000377050		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000599539	ENST00000414436		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000599539	ENST00000432676		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000599539	ENST00000421519		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000599539	ENST00000383547		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000599539	ENST00000383641		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000599539	ENST00000429935		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000339471	ENST00000377050		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000339471	ENST00000414436		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000339471	ENST00000432676		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000339471	ENST00000421519		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000339471	ENST00000383547		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000339471	ENST00000383641		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000339471	ENST00000429935		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000251453	ENST00000377050		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000251453	ENST00000414436		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000251453	ENST00000432676		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000251453	ENST00000421519		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000251453	ENST00000383547		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000251453	ENST00000383641		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000251453	ENST00000429935		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000601655	ENST00000377050		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000601655	ENST00000414436		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000601655	ENST00000432676		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000601655	ENST00000421519		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000601655	ENST00000383547		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-5UTR	ENST00000601655	ENST00000383641		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-intron	ENST00000601655	ENST00000429935		ChiTaRS3.1			BE843019	RPS16	chr19	39923922	-	UBD	chr6	830817	-
intron-3CDS	ENST00000316292	ENST00000368533		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000469717		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000330188		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000341485		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000341372		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000328159		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000271850		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000302206		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000368531		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000323144		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000316292	ENST00000368530		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-3CDS	ENST00000491404	ENST00000368533		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000469717		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000330188		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000341485		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000341372		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000328159		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000271850		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000302206		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000368531		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000323144		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000491404	ENST00000368530		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-3CDS	ENST00000309268	ENST00000368533		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000469717		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000330188		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000341485		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000341372		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000328159		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000271850		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000302206		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000368531		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000323144		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000309268	ENST00000368530		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-3CDS	ENST00000331523	ENST00000368533		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000469717		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000330188		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000341485		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000341372		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000328159		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000271850		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000302206		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000368531		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000323144		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-5UTR	ENST00000331523	ENST00000368530		ChiTaRS3.1			BE787198	EEF1A1	chr6	74229185	-	TPM3	chr1	154145401	-
intron-intron	ENST00000358502	ENST00000420646		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000394989		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000345009		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000394986		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000394991		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000336904		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000508895		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000506244		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000505199		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000358502	ENST00000502987		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000420646		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000394989		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000345009		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000394986		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000394991		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000336904		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000508895		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000506244		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000505199		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000249066	ENST00000502987		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000420646		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000394989		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000345009		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000394986		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000394991		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000336904		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000508895		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000506244		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000505199		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000451256	ENST00000502987		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000420646		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000394989		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000345009		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000394986		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000394991		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000336904		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000508895		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000506244		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000505199		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-intron	ENST00000476579	ENST00000502987		ChiTaRS3.1			DA153823	APOL2	chr22	36635515	-	SNCA	chr4	90650416	-
intron-3CDS	ENST00000368354	ENST00000394485		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
intron-intron	ENST00000368354	ENST00000562939		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
Frame-shit	ENST00000368352	ENST00000394485		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
5CDS-intron	ENST00000368352	ENST00000562939		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
Frame-shit	ENST00000368347	ENST00000394485		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
5CDS-intron	ENST00000368347	ENST00000562939		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
3UTR-3CDS	ENST00000462780	ENST00000394485		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
3UTR-intron	ENST00000462780	ENST00000562939		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
Frame-shit	ENST00000368349	ENST00000394485		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
5CDS-intron	ENST00000368349	ENST00000562939		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
Frame-shit	ENST00000292254	ENST00000394485		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
5CDS-intron	ENST00000292254	ENST00000562939		ChiTaRS3.1			BF752844	RUSC1	chr1	155296463	+	MT1X	chr16	56717870	+
3UTR-3UTR	ENST00000299576	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-intron	ENST00000299576	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-3UTR	ENST00000309377	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-intron	ENST00000309377	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-3UTR	ENST00000309357	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-intron	ENST00000309357	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-3UTR	ENST00000529876	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-intron	ENST00000529876	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-3UTR	ENST00000525005	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-intron	ENST00000525005	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-3UTR	ENST00000534506	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-intron	ENST00000534506	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-3UTR	ENST00000396648	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-intron	ENST00000396648	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-3UTR	ENST00000534147	ENST00000319211		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
3UTR-intron	ENST00000534147	ENST00000505600		ChiTaRS3.1			BX648821	AKIP1	chr11	8941118	+	F2R	chr5	76031271	+
intron-5UTR	ENST00000323345	ENST00000456775		ChiTaRS3.1			DA868683	RPL7A	chr9	136217768	+	ST7-AS1	chr7	116593398	+
intron-5UTR	ENST00000463740	ENST00000456775		ChiTaRS3.1			DA868683	RPL7A	chr9	136217768	+	ST7-AS1	chr7	116593398	+
intron-5UTR	ENST00000315731	ENST00000456775		ChiTaRS3.1			DA868683	RPL7A	chr9	136217768	+	ST7-AS1	chr7	116593398	+
intron-5UTR	ENST00000533820	ENST00000548567		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000533820	ENST00000351328		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000533820	ENST00000542324		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000533129	ENST00000548567		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000533129	ENST00000351328		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000533129	ENST00000542324		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000524773	ENST00000548567		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000524773	ENST00000351328		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000524773	ENST00000542324		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
5UTR-5UTR	ENST00000279247	ENST00000548567		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
5UTR-5UTR	ENST00000279247	ENST00000351328		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
5UTR-5UTR	ENST00000279247	ENST00000542324		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000527469	ENST00000548567		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000527469	ENST00000351328		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000527469	ENST00000542324		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000527323	ENST00000548567		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000527323	ENST00000351328		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-5UTR	ENST00000527323	ENST00000542324		ChiTaRS3.1			DB135857	CAPN1	chr11	64949381	+	CS	chr12	56694113	-
intron-3UTR	ENST00000367255	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000356820	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000423061	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000448038	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000341594	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000265368	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000367253	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000367248	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000413186	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000466159	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000539504	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000347037	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000354674	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
intron-3UTR	ENST00000495090	ENST00000467645		ChiTaRS3.1			DA821248	SYNE1	chr6	152615107	-	AOX2P	chr2	201647103	+
5CDS-intron	ENST00000534358	ENST00000262809		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000534358	ENST00000596124		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000262809		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000596124		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000262809		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000596124		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000262809		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000596124		ChiTaRS3.1			DQ437654	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5UTR-5UTR	ENST00000395402	ENST00000262493		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-intron	ENST00000395402	ENST00000262494		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-intron	ENST00000395402	ENST00000569295		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-5UTR	ENST00000373165	ENST00000262493		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-intron	ENST00000373165	ENST00000262494		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-intron	ENST00000373165	ENST00000569295		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-5UTR	ENST00000276123	ENST00000262493		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-intron	ENST00000276123	ENST00000262494		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
5UTR-intron	ENST00000276123	ENST00000569295		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-5UTR	ENST00000360700	ENST00000262493		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-intron	ENST00000360700	ENST00000262494		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-intron	ENST00000360700	ENST00000569295		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-5UTR	ENST00000542798	ENST00000262493		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-intron	ENST00000542798	ENST00000262494		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-intron	ENST00000542798	ENST00000569295		ChiTaRS3.1			DA491290	ZNF711	chrX	84499122	+	GNAO1	chr16	56225702	+
intron-3CDS	ENST00000225726	ENST00000532636		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-3CDS	ENST00000225726	ENST00000533540		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000225726	ENST00000453788		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000225726	ENST00000534624		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000225726	ENST00000227378		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000225726	ENST00000534319		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000225726	ENST00000526110		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000225726	ENST00000526862		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-3CDS	ENST00000403162	ENST00000532636		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-3CDS	ENST00000403162	ENST00000533540		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000403162	ENST00000453788		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000403162	ENST00000534624		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000403162	ENST00000227378		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000403162	ENST00000534319		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000403162	ENST00000526110		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000403162	ENST00000526862		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-3CDS	ENST00000582252	ENST00000532636		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-3CDS	ENST00000582252	ENST00000533540		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000582252	ENST00000453788		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000582252	ENST00000534624		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000582252	ENST00000227378		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000582252	ENST00000534319		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000582252	ENST00000526110		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
intron-intron	ENST00000582252	ENST00000526862		ChiTaRS3.1			CN338266	CCDC47	chr17	61843410	-	HSPA8	chr11	122929360	-
5CDS-intron	ENST00000519374	ENST00000445937		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000531443		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000517566		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000452423		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000442977		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000521963		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000312046		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000449762		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000297447		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000521592		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519374	ENST00000497705		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000445937		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000531443		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000517566		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000452423		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000442977		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000521963		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000312046		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000449762		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000297447		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000521592		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000519911	ENST00000497705		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000445937		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000531443		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000517566		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000452423		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000442977		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000521963		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000312046		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000449762		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000297447		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000521592		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000265093	ENST00000497705		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000445937		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000531443		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000517566		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000452423		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000442977		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000521963		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000312046		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000449762		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000297447		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000521592		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5CDS-intron	ENST00000517669	ENST00000497705		ChiTaRS3.1			BX474197	ATP6V0E1	chr5	172410919	+	OXR1	chr8	107709020	-
5UTR-intron	ENST00000320201	ENST00000475040		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
5UTR-intron	ENST00000320201	ENST00000272418		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
5UTR-intron	ENST00000392428	ENST00000475040		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
5UTR-intron	ENST00000392428	ENST00000272418		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
5UTR-intron	ENST00000280562	ENST00000475040		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
5UTR-intron	ENST00000280562	ENST00000272418		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-intron	ENST00000542749	ENST00000475040		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-intron	ENST00000542749	ENST00000272418		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-intron	ENST00000546049	ENST00000475040		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-intron	ENST00000546049	ENST00000272418		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-intron	ENST00000451868	ENST00000475040		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-intron	ENST00000451868	ENST00000272418		ChiTaRS3.1			BM805336	PITPNM2	chr12	123594930	-	MRPS5	chr2	95767470	-
intron-3CDS	ENST00000307751	ENST00000368395		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000338684		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000438413		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000457295		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000462215		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368392		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368393		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368390		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368396		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000343256		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368398		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368389		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000342482		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000337604		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-3CDS	ENST00000597803	ENST00000368395		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000338684		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000438413		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000457295		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000462215		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368392		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368393		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368390		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368396		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000343256		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368398		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368389		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000342482		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000337604		ChiTaRS3.1			AW391718	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
3UTR-3CDS	ENST00000370179	ENST00000234677		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
3UTR-3CDS	ENST00000370179	ENST00000369923		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
3UTR-intron	ENST00000370179	ENST00000468588		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
Frame-shit	ENST00000370177	ENST00000234677		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
Frame-shit	ENST00000370177	ENST00000369923		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
5CDS-intron	ENST00000370177	ENST00000468588		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
3UTR-3CDS	ENST00000473620	ENST00000234677		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
3UTR-3CDS	ENST00000473620	ENST00000369923		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
3UTR-intron	ENST00000473620	ENST00000468588		ChiTaRS3.1			BQ923288	PPDPF	chr20	62153293	+	SARS	chr1	109777984	+
intron-5UTR	ENST00000464527	ENST00000380191		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-intron	ENST00000464527	ENST00000479928		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-5UTR	ENST00000464527	ENST00000380132		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-intron	ENST00000464527	ENST00000380181		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-5UTR	ENST00000445927	ENST00000380191		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-intron	ENST00000445927	ENST00000479928		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-5UTR	ENST00000445927	ENST00000380132		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-intron	ENST00000445927	ENST00000380181		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-5UTR	ENST00000294947	ENST00000380191		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-intron	ENST00000294947	ENST00000479928		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-5UTR	ENST00000294947	ENST00000380132		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
intron-intron	ENST00000294947	ENST00000380181		ChiTaRS3.1			DA514557	C2orf61	chr2	47389720	-	GDI2	chr10	5855383	-
Frame-shit	ENST00000278407	ENST00000420083		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000449870		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000318511		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000407004		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000589998		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000250241		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000592763		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000588657		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000278407	ENST00000590261		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
5CDS-intron	ENST00000278407	ENST00000586544		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000420083		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000449870		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000318511		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000407004		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000589998		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000250241		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000592763		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000588657		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000340687	ENST00000590261		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
5CDS-intron	ENST00000340687	ENST00000586544		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000420083		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000449870		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000318511		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000407004		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000589998		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000250241		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000592763		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000588657		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378323	ENST00000590261		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
5CDS-intron	ENST00000378323	ENST00000586544		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000420083		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000449870		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000318511		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000407004		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000589998		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000250241		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000592763		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000588657		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000378324	ENST00000590261		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
5CDS-intron	ENST00000378324	ENST00000586544		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000420083		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000449870		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000318511		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000407004		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000589998		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000250241		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000592763		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000588657		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
Frame-shit	ENST00000403558	ENST00000590261		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
5CDS-intron	ENST00000403558	ENST00000586544		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000420083		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000449870		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000318511		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000407004		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000589998		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000250241		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000592763		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000588657		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-3CDS	ENST00000531605	ENST00000590261		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-intron	ENST00000531605	ENST00000586544		ChiTaRS3.1			AA368909	SERPING1	chr11	57381871	+	ILF3	chr19	10791709	+
intron-5UTR	ENST00000222254	ENST00000477049		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
intron-5UTR	ENST00000222254	ENST00000224140		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
intron-5UTR	ENST00000222254	ENST00000393220		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
intron-5UTR	ENST00000222254	ENST00000372169		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
3UTR-5UTR	ENST00000593731	ENST00000477049		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
3UTR-5UTR	ENST00000593731	ENST00000224140		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
3UTR-5UTR	ENST00000593731	ENST00000393220		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
3UTR-5UTR	ENST00000593731	ENST00000372169		ChiTaRS3.1			AA496625	PIK3R2	chr19	18288845	-	SETX	chr9	135150689	+
5CDS-3UTR	ENST00000261313	ENST00000369864		ChiTaRS3.1			CK024098	PEBP1	chr12	118583389	+	AMIGO1	chr1	110049500	-
5CDS-intron	ENST00000261313	ENST00000369862		ChiTaRS3.1			CK024098	PEBP1	chr12	118583389	+	AMIGO1	chr1	110049500	-
intron-3UTR	ENST00000542939	ENST00000369864		ChiTaRS3.1			CK024098	PEBP1	chr12	118583389	+	AMIGO1	chr1	110049500	-
intron-intron	ENST00000542939	ENST00000369862		ChiTaRS3.1			CK024098	PEBP1	chr12	118583389	+	AMIGO1	chr1	110049500	-
5CDS-3UTR	ENST00000300289	ENST00000272102		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-3UTR	ENST00000300289	ENST00000540651		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-intron	ENST00000300289	ENST00000478424		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-3UTR	ENST00000300289	ENST00000541182		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
intron-3UTR	ENST00000469684	ENST00000272102		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
intron-3UTR	ENST00000469684	ENST00000540651		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
intron-intron	ENST00000469684	ENST00000478424		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
intron-3UTR	ENST00000469684	ENST00000541182		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-3UTR	ENST00000538521	ENST00000272102		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-3UTR	ENST00000538521	ENST00000540651		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-intron	ENST00000538521	ENST00000478424		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
5CDS-3UTR	ENST00000538521	ENST00000541182		ChiTaRS3.1			AV749342	PDIA3	chr15	44062741	+	ARF1	chr1	228286648	+
intron-3CDS	ENST00000536668	ENST00000231751		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000536668	ENST00000426532		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000536668	ENST00000417439		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-intron	ENST00000536668	ENST00000493056		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000544994	ENST00000231751		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000544994	ENST00000426532		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000544994	ENST00000417439		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-intron	ENST00000544994	ENST00000493056		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000228811	ENST00000231751		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000228811	ENST00000426532		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000228811	ENST00000417439		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-intron	ENST00000228811	ENST00000493056		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000540107	ENST00000231751		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000540107	ENST00000426532		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-3CDS	ENST00000540107	ENST00000417439		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
intron-intron	ENST00000540107	ENST00000493056		ChiTaRS3.1			DB205527	PRR4	chr12	11001981	-	LTF	chr3	46497879	-
Frame-shit	ENST00000380492	ENST00000354725		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
5CDS-intron	ENST00000380492	ENST00000467238		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
Frame-shit	ENST00000482354	ENST00000354725		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
5CDS-intron	ENST00000482354	ENST00000467238		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
Frame-shit	ENST00000497603	ENST00000354725		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
5CDS-intron	ENST00000497603	ENST00000467238		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
intron-3CDS	ENST00000495110	ENST00000354725		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
intron-intron	ENST00000495110	ENST00000467238		ChiTaRS3.1			CN305750	MOSPD2	chrX	14891882	+	SND1	chr7	127326665	+
Frame-shit	ENST00000252318	ENST00000544484		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
Frame-shit	ENST00000252318	ENST00000357008		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
Frame-shit	ENST00000252318	ENST00000309577		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
Frame-shit	ENST00000252318	ENST00000544040		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
5CDS-intron	ENST00000252318	ENST00000540960		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
intron-3CDS	ENST00000541339	ENST00000544484		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
intron-3CDS	ENST00000541339	ENST00000357008		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
intron-3CDS	ENST00000541339	ENST00000309577		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
intron-3CDS	ENST00000541339	ENST00000544040		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
intron-intron	ENST00000541339	ENST00000540960		ChiTaRS3.1			BM797239	GALNT8	chr12	4874593	+	CHD4	chr12	6687069	-
intron-3CDS	ENST00000177742	ENST00000366671		ChiTaRS3.1			AW939880	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000177742	ENST00000282549		ChiTaRS3.1			AW939880	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000366671		ChiTaRS3.1			AW939880	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000282549		ChiTaRS3.1			AW939880	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000449985	ENST00000326019		ChiTaRS3.1			DA507601	TMEM107	chr17	8076771	-	SLC4A1AP	chr2	27886757	+
intron-3CDS	ENST00000532998	ENST00000326019		ChiTaRS3.1			DA507601	TMEM107	chr17	8076771	-	SLC4A1AP	chr2	27886757	+
intron-3CDS	ENST00000437139	ENST00000326019		ChiTaRS3.1			DA507601	TMEM107	chr17	8076771	-	SLC4A1AP	chr2	27886757	+
intron-3CDS	ENST00000533070	ENST00000326019		ChiTaRS3.1			DA507601	TMEM107	chr17	8076771	-	SLC4A1AP	chr2	27886757	+
intron-3CDS	ENST00000316425	ENST00000326019		ChiTaRS3.1			DA507601	TMEM107	chr17	8076771	-	SLC4A1AP	chr2	27886757	+
intron-3CDS	ENST00000431792	ENST00000326019		ChiTaRS3.1			DA507601	TMEM107	chr17	8076771	-	SLC4A1AP	chr2	27886757	+
3UTR-intron	ENST00000356708	ENST00000286067		ChiTaRS3.1			N21155	ATP5C1	chr10	7849678	-	C10orf12	chr10	98740891	-
3UTR-intron	ENST00000493053	ENST00000286067		ChiTaRS3.1			N21155	ATP5C1	chr10	7849678	-	C10orf12	chr10	98740891	-
intron-intron	ENST00000541227	ENST00000286067		ChiTaRS3.1			N21155	ATP5C1	chr10	7849678	-	C10orf12	chr10	98740891	-
3UTR-intron	ENST00000335698	ENST00000286067		ChiTaRS3.1			N21155	ATP5C1	chr10	7849678	-	C10orf12	chr10	98740891	-
intron-5UTR	ENST00000357559	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000357559	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000357559	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000357559	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
5UTR-5UTR	ENST00000305586	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
5UTR-5UTR	ENST00000305586	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
5UTR-intron	ENST00000305586	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
5UTR-intron	ENST00000305586	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000491674	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000491674	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000491674	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000491674	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000491062	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000491062	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000491062	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000491062	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000468861	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000468861	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000468861	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000468861	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000445140	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000445140	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000445140	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000445140	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000480918	ENST00000242810		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-5UTR	ENST00000480918	ENST00000454652		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000480918	ENST00000476808		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000480918	ENST00000461813		ChiTaRS3.1			DA402481	FXR1	chr3	180632785	+	KLHL24	chr3	183361265	+
intron-intron	ENST00000418458	ENST00000393791		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000418458	ENST00000356411		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000418458	ENST00000424809		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000418458	ENST00000393797		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000418458	ENST00000550288		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000418458	ENST00000430041		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000418458	ENST00000550454		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000393791		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000356411		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000424809		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000393797		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000550288		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000430041		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000394799	ENST00000550454		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000393791		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000356411		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000424809		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000393797		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000550288		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000430041		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-intron	ENST00000460073	ENST00000550454		ChiTaRS3.1			DA545728	GNL3	chr3	52724838	+	ARHGAP9	chr12	57881851	+
intron-5UTR	ENST00000339788	ENST00000380520		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000339788	ENST00000380524		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000339788	ENST00000380529		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000339788	ENST00000380539		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000339788	ENST00000380546		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000339788	ENST00000335686		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000320816	ENST00000380520		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000320816	ENST00000380524		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000320816	ENST00000380529		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000320816	ENST00000380539		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000320816	ENST00000380546		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000320816	ENST00000335686		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000545653	ENST00000380520		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000545653	ENST00000380524		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000545653	ENST00000380529		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000545653	ENST00000380539		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000545653	ENST00000380546		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000545653	ENST00000335686		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000509337	ENST00000380520		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000509337	ENST00000380524		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000509337	ENST00000380529		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000509337	ENST00000380539		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000509337	ENST00000380546		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000509337	ENST00000335686		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000512525	ENST00000380520		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000512525	ENST00000380524		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000512525	ENST00000380529		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000512525	ENST00000380539		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000512525	ENST00000380546		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-5UTR	ENST00000512525	ENST00000335686		ChiTaRS3.1			S69272	DAB2	chr5	39462178	-	SERPINB6	chr6	2959578	-
intron-3CDS	ENST00000536668	ENST00000396324		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000536668	ENST00000452625		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000536668	ENST00000576790		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000536668	ENST00000300036		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-intron	ENST00000536668	ENST00000573908		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000544994	ENST00000396324		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000544994	ENST00000452625		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000544994	ENST00000576790		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000544994	ENST00000300036		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-intron	ENST00000544994	ENST00000573908		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000228811	ENST00000396324		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000228811	ENST00000452625		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000228811	ENST00000576790		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000228811	ENST00000300036		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-intron	ENST00000228811	ENST00000573908		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000540107	ENST00000396324		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000540107	ENST00000452625		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000540107	ENST00000576790		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-3CDS	ENST00000540107	ENST00000300036		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
intron-intron	ENST00000540107	ENST00000573908		ChiTaRS3.1			DB216219	PRR4	chr12	10999944	-	MYH11	chr16	15835457	-
5UTR-3CDS	ENST00000369472	ENST00000337147		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000369472	ENST00000367075		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000369472	ENST00000392177		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-intron	ENST00000369472	ENST00000476189		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000337147		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000367075		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000392177		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-intron	ENST00000336032	ENST00000476189		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000337147		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000367075		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000392177		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-intron	ENST00000354922	ENST00000476189		ChiTaRS3.1			BM761260	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000368732	ENST00000438331		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368732	ENST00000372231		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368732	ENST00000360615		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368732	ENST00000265447		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368732	ENST00000422982		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368732	ENST00000535999		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368732	ENST00000537102		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-intron	ENST00000368732	ENST00000463657		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000438331		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000372231		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000360615		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000265447		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000422982		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000535999		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000368733	ENST00000537102		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-intron	ENST00000368733	ENST00000463657		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000438331		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000372231		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000360615		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000265447		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000422982		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000535999		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-3CDS	ENST00000477801	ENST00000537102		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-intron	ENST00000477801	ENST00000463657		ChiTaRS3.1			BQ336317	S100A8	chr1	153362574	-	ANXA11	chr10	81915610	-
intron-intron	ENST00000345496	ENST00000488498		ChiTaRS3.1			BE882626	UBE2G2	chr21	46189587	-	C1orf61	chr1	156379996	+
intron-intron	ENST00000345496	ENST00000368243		ChiTaRS3.1			BE882626	UBE2G2	chr21	46189587	-	C1orf61	chr1	156379996	+
intron-intron	ENST00000477954	ENST00000488498		ChiTaRS3.1			BE882626	UBE2G2	chr21	46189587	-	C1orf61	chr1	156379996	+
intron-intron	ENST00000477954	ENST00000368243		ChiTaRS3.1			BE882626	UBE2G2	chr21	46189587	-	C1orf61	chr1	156379996	+
intron-intron	ENST00000330942	ENST00000488498		ChiTaRS3.1			BE882626	UBE2G2	chr21	46189587	-	C1orf61	chr1	156379996	+
intron-intron	ENST00000330942	ENST00000368243		ChiTaRS3.1			BE882626	UBE2G2	chr21	46189587	-	C1orf61	chr1	156379996	+
3UTR-intron	ENST00000306562	ENST00000472647		ChiTaRS3.1			BF913184	ZNF672	chr1	249143334	-	NME7	chr1	169308938	+
3UTR-intron	ENST00000306562	ENST00000367811		ChiTaRS3.1			BF913184	ZNF672	chr1	249143334	-	NME7	chr1	169308938	+
3UTR-intron	ENST00000306562	ENST00000469474		ChiTaRS3.1			BF913184	ZNF672	chr1	249143334	-	NME7	chr1	169308938	+
intron-intron	ENST00000502697	ENST00000472647		ChiTaRS3.1			BF913184	ZNF672	chr1	249143334	-	NME7	chr1	169308938	+
intron-intron	ENST00000502697	ENST00000367811		ChiTaRS3.1			BF913184	ZNF672	chr1	249143334	-	NME7	chr1	169308938	+
intron-intron	ENST00000502697	ENST00000469474		ChiTaRS3.1			BF913184	ZNF672	chr1	249143334	-	NME7	chr1	169308938	+
Frame-shit	ENST00000584601	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000584601	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
In-frame	ENST00000406381	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000406381	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
In-frame	ENST00000541774	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000541774	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
Frame-shit	ENST00000445658	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000445658	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
In-frame	ENST00000540147	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000540147	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
3UTR-3CDS	ENST00000584450	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
3UTR-intron	ENST00000584450	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
In-frame	ENST00000269571	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000269571	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
intron-3CDS	ENST00000578199	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
intron-intron	ENST00000578199	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
intron-3CDS	ENST00000540042	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
intron-intron	ENST00000540042	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
intron-3CDS	ENST00000584888	ENST00000287667		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
intron-intron	ENST00000584888	ENST00000566883		ChiTaRS3.1			CV340327	ERBB2	chr17	37884125	+	NOMO1	chr16	14976494	+
5CDS-intron	ENST00000443617	ENST00000427662		ChiTaRS3.1			BP251631	HERC1	chr15	63900819	-	SH3PXD2A	chr10	105354919	-
5CDS-3UTR	ENST00000443617	ENST00000369774		ChiTaRS3.1			BP251631	HERC1	chr15	63900819	-	SH3PXD2A	chr10	105354919	-
5CDS-3UTR	ENST00000443617	ENST00000355946		ChiTaRS3.1			BP251631	HERC1	chr15	63900819	-	SH3PXD2A	chr10	105354919	-
5CDS-intron	ENST00000443617	ENST00000315994		ChiTaRS3.1			BP251631	HERC1	chr15	63900819	-	SH3PXD2A	chr10	105354919	-
5CDS-intron	ENST00000443617	ENST00000540321		ChiTaRS3.1			BP251631	HERC1	chr15	63900819	-	SH3PXD2A	chr10	105354919	-
5CDS-intron	ENST00000443617	ENST00000538130		ChiTaRS3.1			BP251631	HERC1	chr15	63900819	-	SH3PXD2A	chr10	105354919	-
intron-3CDS	ENST00000602723	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000602723	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000400186	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000400186	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000520002	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000520002	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000602557	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000602557	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000537824	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000537824	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000542608	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000542608	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000539096	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000539096	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000523387	ENST00000376395		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3CDS	ENST00000523387	ENST00000257468		ChiTaRS3.1			M85870	CSMD1	chr8	4042986	-	UBQLN1	chr9	86322470	-
intron-3UTR	ENST00000311713	ENST00000414007		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000311713	ENST00000419187		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000311713	ENST00000471256		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-3UTR	ENST00000278856	ENST00000414007		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000278856	ENST00000419187		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000278856	ENST00000471256		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-3UTR	ENST00000529106	ENST00000414007		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000529106	ENST00000419187		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000529106	ENST00000471256		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-3UTR	ENST00000525239	ENST00000414007		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000525239	ENST00000419187		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000525239	ENST00000471256		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-3UTR	ENST00000525752	ENST00000414007		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000525752	ENST00000419187		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000525752	ENST00000471256		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-3UTR	ENST00000540620	ENST00000414007		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000540620	ENST00000419187		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-intron	ENST00000540620	ENST00000471256		ChiTaRS3.1			DA154669	WDR74	chr11	62609095	-	SRGAP2	chr1	206634773	+
intron-3UTR	ENST00000391976	ENST00000519716		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000391976	ENST00000252773		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000391976	ENST00000428389		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000391976	ENST00000551649		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000391976	ENST00000552293		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000391976	ENST00000550896		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000310931	ENST00000519716		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000310931	ENST00000252773		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000310931	ENST00000428389		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000310931	ENST00000551649		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000310931	ENST00000552293		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000310931	ENST00000550896		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000391975	ENST00000519716		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000391975	ENST00000252773		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000391975	ENST00000428389		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000391975	ENST00000551649		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000391975	ENST00000552293		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000391975	ENST00000550896		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000427183	ENST00000519716		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000427183	ENST00000252773		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000427183	ENST00000428389		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000427183	ENST00000551649		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000427183	ENST00000552293		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000427183	ENST00000550896		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000476807	ENST00000519716		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000476807	ENST00000252773		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-3UTR	ENST00000476807	ENST00000428389		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000476807	ENST00000551649		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000476807	ENST00000552293		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
intron-intron	ENST00000476807	ENST00000550896		ChiTaRS3.1			CN298952	HDLBP	chr2	242196158	-	UNC13A	chr19	17715047	-
Frame-shit	ENST00000453304	ENST00000380158		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-intron	ENST00000453304	ENST00000264572		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-intron	ENST00000453304	ENST00000408927		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000453304	ENST00000512857		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000453304	ENST00000453712		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000453304	ENST00000339360		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000453304	ENST00000408900		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
Frame-shit	ENST00000506749	ENST00000380158		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-intron	ENST00000506749	ENST00000264572		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-intron	ENST00000506749	ENST00000408927		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000506749	ENST00000512857		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000506749	ENST00000453712		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000506749	ENST00000339360		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000506749	ENST00000408900		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
Frame-shit	ENST00000504962	ENST00000380158		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-intron	ENST00000504962	ENST00000264572		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-intron	ENST00000504962	ENST00000408927		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000504962	ENST00000512857		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000504962	ENST00000453712		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000504962	ENST00000339360		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
5CDS-3UTR	ENST00000504962	ENST00000408900		ChiTaRS3.1			DA588240	UNC5C	chr4	96469885	-	RAP1GDS1	chr4	99313101	+
intron-5UTR	ENST00000301764	ENST00000311764		ChiTaRS3.1			DA870794	DDB1	chr11	61084087	-	ZNF408	chr11	46722587	+
intron-5UTR	ENST00000450997	ENST00000311764		ChiTaRS3.1			DA870794	DDB1	chr11	61084087	-	ZNF408	chr11	46722587	+
intron-5UTR	ENST00000451943	ENST00000311764		ChiTaRS3.1			DA870794	DDB1	chr11	61084087	-	ZNF408	chr11	46722587	+
intron-5UTR	ENST00000538470	ENST00000311764		ChiTaRS3.1			DA870794	DDB1	chr11	61084087	-	ZNF408	chr11	46722587	+
intron-5UTR	ENST00000545930	ENST00000311764		ChiTaRS3.1			DA870794	DDB1	chr11	61084087	-	ZNF408	chr11	46722587	+
intron-5UTR	ENST00000545187	ENST00000453363		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000545187	ENST00000316193		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000545187	ENST00000329882		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000338128	ENST00000453363		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000338128	ENST00000316193		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000338128	ENST00000329882		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000457269	ENST00000453363		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000457269	ENST00000316193		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000457269	ENST00000329882		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000578963	ENST00000453363		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000578963	ENST00000316193		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000578963	ENST00000329882		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000317018	ENST00000453363		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000317018	ENST00000316193		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-5UTR	ENST00000317018	ENST00000329882		ChiTaRS3.1			AW962615	ISYNA1	chr19	18547190	-	CSH1	chr17	61973933	-
intron-3UTR	ENST00000397821	ENST00000378707		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000397821	ENST00000359836		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000397821	ENST00000541735		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000397821	ENST00000343523		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000397821	ENST00000378677		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000397821	ENST00000357033		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000397821	ENST00000474231		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000397821	ENST00000378723		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000397821	ENST00000378702		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000397821	ENST00000361471		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000397821	ENST00000378680		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000397821	ENST00000288447		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000397821	ENST00000445312		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000378707		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000359836		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000541735		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000343523		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000378677		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000357033		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379716	ENST00000474231		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379716	ENST00000378723		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379716	ENST00000378702		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379716	ENST00000361471		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379716	ENST00000378680		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379716	ENST00000288447		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379716	ENST00000445312		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000378707		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000359836		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000541735		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000343523		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000378677		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000357033		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379698	ENST00000474231		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379698	ENST00000378723		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379698	ENST00000378702		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379698	ENST00000361471		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379698	ENST00000378680		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379698	ENST00000288447		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379698	ENST00000445312		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000378707		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000359836		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000541735		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000343523		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000378677		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000357033		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000541422	ENST00000474231		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000541422	ENST00000378723		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000541422	ENST00000378702		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000541422	ENST00000361471		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000541422	ENST00000378680		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000541422	ENST00000288447		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000541422	ENST00000445312		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000378707		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000359836		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000541735		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000343523		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000378677		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000357033		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379697	ENST00000474231		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000379697	ENST00000378723		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379697	ENST00000378702		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379697	ENST00000361471		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379697	ENST00000378680		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379697	ENST00000288447		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000379697	ENST00000445312		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000378707		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000359836		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000541735		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000343523		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000378677		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000357033		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000477102	ENST00000474231		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-3UTR	ENST00000477102	ENST00000378723		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000477102	ENST00000378702		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000477102	ENST00000361471		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000477102	ENST00000378680		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000477102	ENST00000288447		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
intron-intron	ENST00000477102	ENST00000445312		ChiTaRS3.1			BI060372	SH3KBP1	chrX	19626070	-	DMD	chrX	31138571	-
3UTR-3CDS	ENST00000264093	ENST00000309955		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000443227		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000341222		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000340870		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000355558		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000341582		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000342795		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000395148		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000264093	ENST00000423241		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000264093	ENST00000490965		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000264093	ENST00000440180		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000264093	ENST00000457277		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000264093	ENST00000494258		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000264093	ENST00000479953		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000309955		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000443227		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000341222		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000340870		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000355558		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000341582		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000342795		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000395148		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000348222	ENST00000423241		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000348222	ENST00000490965		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000348222	ENST00000440180		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000348222	ENST00000457277		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000348222	ENST00000494258		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000348222	ENST00000479953		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000309955		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000443227		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000341222		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000340870		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000355558		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000341582		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000342795		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000395148		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-3CDS	ENST00000462685	ENST00000423241		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-intron	ENST00000462685	ENST00000490965		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-intron	ENST00000462685	ENST00000440180		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-intron	ENST00000462685	ENST00000457277		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-intron	ENST00000462685	ENST00000494258		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
intron-intron	ENST00000462685	ENST00000479953		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000309955		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000443227		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000341222		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000340870		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000355558		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000341582		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000342795		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000395148		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-3CDS	ENST00000356837	ENST00000423241		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000356837	ENST00000490965		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000356837	ENST00000440180		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000356837	ENST00000457277		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000356837	ENST00000494258		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
3UTR-intron	ENST00000356837	ENST00000479953		ChiTaRS3.1			AI351551	DGUOK	chr2	74185950	-	CFLAR	chr2	202000746	-
Frame-shit	ENST00000392738	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
5CDS-5UTR	ENST00000392738	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
Frame-shit	ENST00000500704	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
5CDS-5UTR	ENST00000500704	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
Frame-shit	ENST00000327681	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
5CDS-5UTR	ENST00000327681	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
5UTR-3CDS	ENST00000539675	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
5UTR-5UTR	ENST00000539675	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-3CDS	ENST00000369233	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-5UTR	ENST00000369233	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-3CDS	ENST00000329966	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-5UTR	ENST00000329966	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-3CDS	ENST00000472914	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-5UTR	ENST00000472914	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-3CDS	ENST00000369232	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-5UTR	ENST00000369232	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-3CDS	ENST00000369231	ENST00000261600		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-5UTR	ENST00000369231	ENST00000582313		ChiTaRS3.1			AK310643	USP45	chr6	99912478	-	THOC1	chr18	254357	-
intron-3CDS	ENST00000546088	ENST00000367178		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-intron	ENST00000546088	ENST00000461219		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-intron	ENST00000546088	ENST00000417268		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-intron	ENST00000546088	ENST00000367186		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-3CDS	ENST00000448108	ENST00000367178		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-intron	ENST00000448108	ENST00000461219		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-intron	ENST00000448108	ENST00000417268		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-intron	ENST00000448108	ENST00000367186		ChiTaRS3.1			H09708	TAF1D	chr11	93465579	-	SCAF8	chr6	155153340	+
intron-5UTR	ENST00000399332	ENST00000248089		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574151		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000396916		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000399332	ENST00000572355		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574980		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000354679		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000248089		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574151		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000396916		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000553700	ENST00000572355		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574980		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000354679		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000248089		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574151		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000396916		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000556474	ENST00000572355		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574980		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000354679		ChiTaRS3.1			BM845006	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-3CDS	ENST00000429845	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000275262		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000392127		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000453779		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000361752		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000361195		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000424802		ChiTaRS3.1			AF142421	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3UTR	ENST00000381431	ENST00000260356		ChiTaRS3.1			CA446529	SGCB	chr4	52890180	+	THBS1	chr15	39887607	-
intron-3UTR	ENST00000535450	ENST00000260356		ChiTaRS3.1			CA446529	SGCB	chr4	52890180	+	THBS1	chr15	39887607	-
intron-3CDS	ENST00000325006	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000325006	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000325006	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000325006	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000325006	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446544	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446544	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446544	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446544	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446544	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000531335	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000531335	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000531335	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000531335	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000531335	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000474594	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000474594	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000474594	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000474594	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000474594	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446212	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446212	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000446212	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446212	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000446212	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000490911	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000490911	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000490911	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000490911	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000490911	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000472554	ENST00000326799		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000472554	ENST00000376016		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-3CDS	ENST00000472554	ENST00000375972		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000472554	ENST00000463270		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
intron-intron	ENST00000472554	ENST00000477432		ChiTaRS3.1			AK309708	AHCYL2	chr7	129050161	-	YME1L1	chr10	27425291	-
5CDS-3UTR	ENST00000416426	ENST00000395555		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000416426	ENST00000494157		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000416426	ENST00000225740		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000416426	ENST00000444455		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000416426	ENST00000457500		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-intron	ENST00000416426	ENST00000485231		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000284073	ENST00000395555		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000284073	ENST00000494157		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000284073	ENST00000225740		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000284073	ENST00000444455		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000284073	ENST00000457500		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-intron	ENST00000284073	ENST00000485231		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000322684	ENST00000395555		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000322684	ENST00000494157		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000322684	ENST00000225740		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000322684	ENST00000444455		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-3UTR	ENST00000322684	ENST00000457500		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
5CDS-intron	ENST00000322684	ENST00000485231		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000442934	ENST00000395555		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000442934	ENST00000494157		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000442934	ENST00000225740		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000442934	ENST00000444455		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000442934	ENST00000457500		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-intron	ENST00000442934	ENST00000485231		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579180	ENST00000395555		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579180	ENST00000494157		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579180	ENST00000225740		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579180	ENST00000444455		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579180	ENST00000457500		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-intron	ENST00000579180	ENST00000485231		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579505	ENST00000395555		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579505	ENST00000494157		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579505	ENST00000225740		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579505	ENST00000444455		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000579505	ENST00000457500		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-intron	ENST00000579505	ENST00000485231		ChiTaRS3.1			CV572132	MSI2	chr17	55335694	+	ALDH3A1	chr17	19641428	-
intron-3UTR	ENST00000296129	ENST00000535458		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000296129	ENST00000290158		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000296129	ENST00000540627		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000296129	ENST00000537679		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-intron	ENST00000296129	ENST00000577918		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000425231	ENST00000535458		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000425231	ENST00000290158		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000425231	ENST00000540627		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000425231	ENST00000537679		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-intron	ENST00000425231	ENST00000577918		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000490471	ENST00000535458		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000490471	ENST00000290158		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000490471	ENST00000540627		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-3UTR	ENST00000490471	ENST00000537679		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
intron-intron	ENST00000490471	ENST00000577918		ChiTaRS3.1			AK026028	CDCP1	chr3	45125585	-	KPNB1	chr17	45759842	+
5CDS-3UTR	ENST00000310118	ENST00000216271		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5CDS-intron	ENST00000310118	ENST00000448072		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5CDS-intron	ENST00000310118	ENST00000498366		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5CDS-intron	ENST00000310118	ENST00000349505		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-3UTR	ENST00000435761	ENST00000216271		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000435761	ENST00000448072		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000435761	ENST00000498366		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000435761	ENST00000349505		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-3UTR	ENST00000439383	ENST00000216271		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000439383	ENST00000448072		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000439383	ENST00000498366		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
intron-intron	ENST00000439383	ENST00000349505		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-3UTR	ENST00000459910	ENST00000216271		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-intron	ENST00000459910	ENST00000448072		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-intron	ENST00000459910	ENST00000498366		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
3UTR-intron	ENST00000459910	ENST00000349505		ChiTaRS3.1			CA336827	PSMD2	chr3	184018173	+	HDAC10	chr22	50683703	-
5UTR-intron	ENST00000451284	ENST00000542817		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000451284	ENST00000458643		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000451284	ENST00000448012		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000451284	ENST00000519305		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000542817		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000458643		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000448012		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000519305		ChiTaRS3.1			DB021417	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5CDS-intron	ENST00000389857	ENST00000355797		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000375036		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000449428		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000592148		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000585519		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000588114		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000589082		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000331194	ENST00000355797		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000375036		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000449428		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000592148		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000585519		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000588114		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000589082		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000389856	ENST00000355797		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000375036		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000449428		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000592148		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000585519		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000588114		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000589082		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000553403	ENST00000355797		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000375036		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000449428		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000592148		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000585519		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000588114		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000589082		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000554165	ENST00000355797		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000375036		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000449428		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000592148		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000585519		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000588114		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000589082		ChiTaRS3.1			BG200422	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-intron	ENST00000343735	ENST00000322954		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000343735	ENST00000539319		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000343735	ENST00000379983		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000343735	ENST00000560441		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000343735	ENST00000559183		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000183605	ENST00000322954		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000183605	ENST00000539319		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000183605	ENST00000379983		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000183605	ENST00000560441		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
5CDS-intron	ENST00000183605	ENST00000559183		ChiTaRS3.1			BM854674	CLDN18	chr3	137752491	+	UACA	chr15	71043414	+
intron-intron	ENST00000424155	ENST00000344683		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000424155	ENST00000519480		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000424155	ENST00000522905		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000424155	ENST00000521175		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000299705	ENST00000344683		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000299705	ENST00000519480		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000299705	ENST00000522905		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000299705	ENST00000521175		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000536821	ENST00000344683		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000536821	ENST00000519480		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000536821	ENST00000522905		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-intron	ENST00000536821	ENST00000521175		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000558562	ENST00000344683		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000558562	ENST00000519480		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000558562	ENST00000522905		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
3UTR-intron	ENST00000558562	ENST00000521175		ChiTaRS3.1			DB292767	TMED3	chr15	79614830	+	MCPH1	chr8	6372269	-
intron-3UTR	ENST00000485760	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000485760	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000485760	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371236	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371236	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371234	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371234	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000420954	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000420954	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000439789	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000439789	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000414851	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000414851	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371231	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371231	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000513024		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000509638		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000508501		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000512946		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000313860		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000512632		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000512820		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000503057		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000511496		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000514096		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000509277		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000396595		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000371230	ENST00000381753		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000509454		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-intron	ENST00000371230	ENST00000515785		ChiTaRS3.1			BE173819	DAB1	chr1	59002223	-	LIMCH1	chr4	41700535	+
intron-3UTR	ENST00000396062	ENST00000322347		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000396062	ENST00000562233		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000396062	ENST00000567270		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000396062	ENST00000568783		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000396062	ENST00000568517		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-intron	ENST00000396062	ENST00000564811		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000216330	ENST00000322347		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000216330	ENST00000562233		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000216330	ENST00000567270		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000216330	ENST00000568783		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-3UTR	ENST00000216330	ENST00000568517		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
intron-intron	ENST00000216330	ENST00000564811		ChiTaRS3.1			BU955324	FKBP3	chr14	45585109	-	COX5A	chr15	75212736	-
3UTR-3UTR	ENST00000591462	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3UTR	ENST00000252455	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3UTR	ENST00000412601	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3UTR	ENST00000592741	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3UTR	ENST00000587327	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3UTR	ENST00000589838	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3UTR	ENST00000591510	ENST00000395699		ChiTaRS3.1			AA282178	PRKCSH	chr19	11561654	-	PURB	chr7	44919088	+
3UTR-3CDS	ENST00000373580	ENST00000289371		ChiTaRS3.1			BM727161	OLFML2A	chr9	127574347	+	EIF5B	chr2	99984997	+
3UTR-3CDS	ENST00000288815	ENST00000289371		ChiTaRS3.1			BM727161	OLFML2A	chr9	127574347	+	EIF5B	chr2	99984997	+
intron-3CDS	ENST00000301015	ENST00000253251		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-5UTR	ENST00000301015	ENST00000377157		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-5UTR	ENST00000301015	ENST00000343090		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-intron	ENST00000301015	ENST00000377153		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-intron	ENST00000301015	ENST00000475795		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-3CDS	ENST00000327397	ENST00000253251		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-5UTR	ENST00000327397	ENST00000377157		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-5UTR	ENST00000327397	ENST00000343090		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-intron	ENST00000327397	ENST00000377153		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
intron-intron	ENST00000327397	ENST00000475795		ChiTaRS3.1			BF889257	PIEZO1	chr16	88783465	-	UBE4B	chr1	10155523	+
3UTR-3CDS	ENST00000250894	ENST00000372343		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
3UTR-3CDS	ENST00000250894	ENST00000372339		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
3UTR-intron	ENST00000250894	ENST00000492152		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-3CDS	ENST00000356010	ENST00000372343		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-3CDS	ENST00000356010	ENST00000372339		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-intron	ENST00000356010	ENST00000492152		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-3CDS	ENST00000568271	ENST00000372343		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-3CDS	ENST00000568271	ENST00000372339		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-intron	ENST00000568271	ENST00000492152		ChiTaRS3.1			BF948732	MAPK8IP3	chr16	1819723	+	IPO13	chr1	44433065	+
intron-3CDS	ENST00000263856	ENST00000258415		ChiTaRS3.1			BF354800	CHMP3	chr2	86737498	-	CYP27A1	chr2	219679674	+
intron-3CDS	ENST00000409727	ENST00000258415		ChiTaRS3.1			BF354800	CHMP3	chr2	86737498	-	CYP27A1	chr2	219679674	+
intron-3CDS	ENST00000409225	ENST00000258415		ChiTaRS3.1			BF354800	CHMP3	chr2	86737498	-	CYP27A1	chr2	219679674	+
intron-3CDS	ENST00000439940	ENST00000258415		ChiTaRS3.1			BF354800	CHMP3	chr2	86737498	-	CYP27A1	chr2	219679674	+
intron-3CDS	ENST00000494623	ENST00000258415		ChiTaRS3.1			BF354800	CHMP3	chr2	86737498	-	CYP27A1	chr2	219679674	+
Frame-shit	ENST00000355387	ENST00000584667		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000355387	ENST00000355423		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
5CDS-intron	ENST00000355387	ENST00000579864		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000361799	ENST00000584667		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000361799	ENST00000355423		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
5CDS-intron	ENST00000361799	ENST00000579864		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000372247	ENST00000584667		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000372247	ENST00000355423		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
5CDS-intron	ENST00000372247	ENST00000579864		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000443020	ENST00000584667		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000443020	ENST00000355423		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
5CDS-intron	ENST00000443020	ENST00000579864		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
3UTR-3CDS	ENST00000480686	ENST00000584667		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
3UTR-3CDS	ENST00000480686	ENST00000355423		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
3UTR-intron	ENST00000480686	ENST00000579864		ChiTaRS3.1			BQ219029	RNF220	chr1	45111132	+	SAP30BP	chr17	73702417	+
Frame-shit	ENST00000309909	ENST00000397944		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-5UTR	ENST00000309909	ENST00000367493		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000309909	ENST00000523560		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000309909	ENST00000367488		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
Frame-shit	ENST00000455858	ENST00000397944		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-5UTR	ENST00000455858	ENST00000367493		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000455858	ENST00000523560		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000455858	ENST00000367488		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-3CDS	ENST00000551773	ENST00000397944		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-5UTR	ENST00000551773	ENST00000367493		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-intron	ENST00000551773	ENST00000523560		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-intron	ENST00000551773	ENST00000367488		ChiTaRS3.1			AU120064	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-intron	ENST00000251157	ENST00000265239		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000251157	ENST00000455191		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000251157	ENST00000453254		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000251157	ENST00000480302		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000340370	ENST00000265239		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000340370	ENST00000455191		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000340370	ENST00000453254		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000340370	ENST00000480302		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000489185	ENST00000265239		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000489185	ENST00000455191		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000489185	ENST00000453254		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000489185	ENST00000480302		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000404627	ENST00000265239		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000404627	ENST00000455191		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000404627	ENST00000453254		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-intron	ENST00000404627	ENST00000480302		ChiTaRS3.1			CA776035	DOCK7	chr1	62976292	-	IQCG	chr3	197677087	+
intron-3CDS	ENST00000408742	ENST00000407106		ChiTaRS3.1			BU956000	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000261755		ChiTaRS3.1			BU956000	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000561421		ChiTaRS3.1			BU956000	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000539156		ChiTaRS3.1			BU956000	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3UTR	ENST00000408742	ENST00000558627		ChiTaRS3.1			BU956000	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000398146	ENST00000375643		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000398146	ENST00000375629		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000398146	ENST00000443024		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000398146	ENST00000447699		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000398146	ENST00000375627		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000398146	ENST00000474340		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-3CDS	ENST00000420840	ENST00000375643		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000420840	ENST00000375629		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000420840	ENST00000443024		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000420840	ENST00000447699		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000420840	ENST00000375627		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000420840	ENST00000474340		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-3CDS	ENST00000327544	ENST00000375643		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000327544	ENST00000375629		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000327544	ENST00000443024		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000327544	ENST00000447699		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000327544	ENST00000375627		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000327544	ENST00000474340		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-3CDS	ENST00000494592	ENST00000375643		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000494592	ENST00000375629		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000494592	ENST00000443024		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-5UTR	ENST00000494592	ENST00000447699		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000494592	ENST00000375627		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
intron-intron	ENST00000494592	ENST00000474340		ChiTaRS3.1			BQ362438	RGPD2	chr2	88124673	-	IARS	chr9	95048884	-
3UTR-3UTR	ENST00000216492	ENST00000458501		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-3UTR	ENST00000216492	ENST00000379644		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-intron	ENST00000216492	ENST00000297798		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-intron	ENST00000216492	ENST00000521576		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-3UTR	ENST00000334654	ENST00000458501		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-3UTR	ENST00000334654	ENST00000379644		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-intron	ENST00000334654	ENST00000297798		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
3UTR-intron	ENST00000334654	ENST00000521576		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
intron-3UTR	ENST00000553866	ENST00000458501		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
intron-3UTR	ENST00000553866	ENST00000379644		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
intron-intron	ENST00000553866	ENST00000297798		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
intron-intron	ENST00000553866	ENST00000521576		ChiTaRS3.1			N95072	CHGA	chr14	93401340	-	HGSNAT	chr8	43056380	-
intron-3CDS	ENST00000327492	ENST00000358344		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000506339		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000355836		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000514633		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000515193		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000506259		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
intron-3CDS	ENST00000327492	ENST00000504898		ChiTaRS3.1			DA539348	TOB2	chr22	41833331	-	HNRNPAB	chr5	177631858	+
3UTR-3CDS	ENST00000279873	ENST00000311528		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
3UTR-3CDS	ENST00000279873	ENST00000567815		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
3UTR-3CDS	ENST00000279873	ENST00000452368		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
3UTR-3CDS	ENST00000279873	ENST00000393099		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
intron-3CDS	ENST00000309334	ENST00000311528		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
intron-3CDS	ENST00000309334	ENST00000567815		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
intron-3CDS	ENST00000309334	ENST00000452368		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
intron-3CDS	ENST00000309334	ENST00000393099		ChiTaRS3.1			DW426670	ARID5B	chr10	63854091	+	RPL13	chr16	89629340	+
intron-3CDS	ENST00000268097	ENST00000532636		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000268097	ENST00000533540		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000268097	ENST00000453788		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000268097	ENST00000534624		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000268097	ENST00000227378		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000268097	ENST00000534319		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000268097	ENST00000526110		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000268097	ENST00000526862		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000566304	ENST00000532636		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000566304	ENST00000533540		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000566304	ENST00000453788		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000566304	ENST00000534624		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000566304	ENST00000227378		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000566304	ENST00000534319		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000566304	ENST00000526110		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000566304	ENST00000526862		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000457859	ENST00000532636		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000457859	ENST00000533540		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000457859	ENST00000453788		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000457859	ENST00000534624		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000457859	ENST00000227378		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000457859	ENST00000534319		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000457859	ENST00000526110		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000457859	ENST00000526862		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000567159	ENST00000532636		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000567159	ENST00000533540		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567159	ENST00000453788		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567159	ENST00000534624		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567159	ENST00000227378		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567159	ENST00000534319		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567159	ENST00000526110		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567159	ENST00000526862		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000429918	ENST00000532636		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000429918	ENST00000533540		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000429918	ENST00000453788		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000429918	ENST00000534624		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000429918	ENST00000227378		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000429918	ENST00000534319		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000429918	ENST00000526110		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000429918	ENST00000526862		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000567213	ENST00000532636		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-3CDS	ENST00000567213	ENST00000533540		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567213	ENST00000453788		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567213	ENST00000534624		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567213	ENST00000227378		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567213	ENST00000534319		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567213	ENST00000526110		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
intron-intron	ENST00000567213	ENST00000526862		ChiTaRS3.1			BQ324959	HEXA	chr15	72638935	+	HSPA8	chr11	122929161	-
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA743915	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-5UTR	ENST00000397967	ENST00000380680		ChiTaRS3.1			DB063353	RNASE1	chr14	21270074	-	UBL3	chr13	30423819	-
intron-5UTR	ENST00000340900	ENST00000380680		ChiTaRS3.1			DB063353	RNASE1	chr14	21270074	-	UBL3	chr13	30423819	-
intron-5UTR	ENST00000412779	ENST00000380680		ChiTaRS3.1			DB063353	RNASE1	chr14	21270074	-	UBL3	chr13	30423819	-
intron-5UTR	ENST00000555698	ENST00000380680		ChiTaRS3.1			DB063353	RNASE1	chr14	21270074	-	UBL3	chr13	30423819	-
intron-5UTR	ENST00000397970	ENST00000380680		ChiTaRS3.1			DB063353	RNASE1	chr14	21270074	-	UBL3	chr13	30423819	-
3UTR-intron	ENST00000258383	ENST00000469372		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000452323		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000299367		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000442278		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000418949		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000468407		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000498138		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000550363		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000551081		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000416252		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000419062		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000475544		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000550682		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000549997		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000413548		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000423826		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000476210		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000552638		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000551648		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000448206		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000428140		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000489229		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000547984		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000548973		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000383362		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000383367		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000548995		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000549222		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000548250		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000548828		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000375510		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000383359		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000491097		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000548500		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000550045		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000549972		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000550129		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000411803		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000452763		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000258383	ENST00000491080		ChiTaRS3.1			CD367463	MRPL44	chr2	224832206	-	C2	chr6	3235248	-
3UTR-intron	ENST00000373586	ENST00000373548		ChiTaRS3.1			AI682532	EIF3I	chr1	32697093	-	HDAC1	chr1	32786517	-
3UTR-intron	ENST00000373586	ENST00000373541		ChiTaRS3.1			AI682532	EIF3I	chr1	32697093	-	HDAC1	chr1	32786517	-
3UTR-intron	ENST00000373586	ENST00000490081		ChiTaRS3.1			AI682532	EIF3I	chr1	32697093	-	HDAC1	chr1	32786517	-
intron-intron	ENST00000471486	ENST00000373548		ChiTaRS3.1			AI682532	EIF3I	chr1	32697093	-	HDAC1	chr1	32786517	-
intron-intron	ENST00000471486	ENST00000373541		ChiTaRS3.1			AI682532	EIF3I	chr1	32697093	-	HDAC1	chr1	32786517	-
intron-intron	ENST00000471486	ENST00000490081		ChiTaRS3.1			AI682532	EIF3I	chr1	32697093	-	HDAC1	chr1	32786517	-
intron-3CDS	ENST00000384994	ENST00000330883		ChiTaRS3.1			BQ478537	NEAT1	chr11	65193013	+	KCNH2	chr7	150648053	-
intron-3CDS	ENST00000384994	ENST00000392968		ChiTaRS3.1			BQ478537	NEAT1	chr11	65193013	+	KCNH2	chr7	150648053	-
intron-3CDS	ENST00000384994	ENST00000262186		ChiTaRS3.1			BQ478537	NEAT1	chr11	65193013	+	KCNH2	chr7	150648053	-
intron-3CDS	ENST00000384994	ENST00000430723		ChiTaRS3.1			BQ478537	NEAT1	chr11	65193013	+	KCNH2	chr7	150648053	-
5CDS-intron	ENST00000449260	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000449260	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000449260	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000449260	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000449260	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000552882	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000552882	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000552882	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000552882	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000552882	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550464	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550464	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550464	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550464	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550464	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548747	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548747	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548747	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548747	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548747	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000536427	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000536427	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000536427	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000536427	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000536427	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000539511	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000539511	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000539511	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000539511	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000539511	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000360714	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000360714	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000360714	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000360714	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000360714	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548493	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548493	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548493	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548493	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000548493	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550447	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550447	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550447	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550447	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
5CDS-intron	ENST00000550447	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
intron-intron	ENST00000548689	ENST00000470165		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
intron-intron	ENST00000548689	ENST00000416979		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
intron-intron	ENST00000548689	ENST00000370151		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
intron-intron	ENST00000548689	ENST00000370147		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
intron-intron	ENST00000548689	ENST00000370148		ChiTaRS3.1			EL948109	PMEL	chr12	56359718	-	DPCD	chr10	103340175	-
intron-3CDS	ENST00000500728	ENST00000348943		ChiTaRS3.1			AL046867	LRPAP1	chr4	3514690	-	HNRNPM	chr19	8551251	+
intron-3CDS	ENST00000500728	ENST00000325495		ChiTaRS3.1			AL046867	LRPAP1	chr4	3514690	-	HNRNPM	chr19	8551251	+
intron-intron	ENST00000500728	ENST00000602219		ChiTaRS3.1			AL046867	LRPAP1	chr4	3514690	-	HNRNPM	chr19	8551251	+
intron-3CDS	ENST00000296325	ENST00000348943		ChiTaRS3.1			AL046867	LRPAP1	chr4	3514690	-	HNRNPM	chr19	8551251	+
intron-3CDS	ENST00000296325	ENST00000325495		ChiTaRS3.1			AL046867	LRPAP1	chr4	3514690	-	HNRNPM	chr19	8551251	+
intron-intron	ENST00000296325	ENST00000602219		ChiTaRS3.1			AL046867	LRPAP1	chr4	3514690	-	HNRNPM	chr19	8551251	+
3UTR-intron	ENST00000302516	ENST00000269033		ChiTaRS3.1			BG945983	SF3B3	chr16	70605815	+	SSH2	chr17	28116498	-
3UTR-intron	ENST00000302516	ENST00000540801		ChiTaRS3.1			BG945983	SF3B3	chr16	70605815	+	SSH2	chr17	28116498	-
3UTR-intron	ENST00000302516	ENST00000324677		ChiTaRS3.1			BG945983	SF3B3	chr16	70605815	+	SSH2	chr17	28116498	-
3UTR-intron	ENST00000302516	ENST00000582084		ChiTaRS3.1			BG945983	SF3B3	chr16	70605815	+	SSH2	chr17	28116498	-
3UTR-intron	ENST00000302516	ENST00000590153		ChiTaRS3.1			BG945983	SF3B3	chr16	70605815	+	SSH2	chr17	28116498	-
3UTR-intron	ENST00000302516	ENST00000579954		ChiTaRS3.1			BG945983	SF3B3	chr16	70605815	+	SSH2	chr17	28116498	-
intron-3CDS	ENST00000476233	ENST00000352456		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000595018		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000392006		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000378215		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000602130		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000593587		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000263367		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-intron	ENST00000476233	ENST00000594207		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000352456		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000595018		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000392006		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000378215		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000602130		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000593587		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000263367		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-intron	ENST00000354667	ENST00000594207		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000352456		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000595018		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000392006		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000378215		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000602130		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000593587		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000263367		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-intron	ENST00000356674	ENST00000594207		ChiTaRS3.1			BE560836	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000425013	ENST00000374866		ChiTaRS3.1			AI742044	RNF216	chr7	5659833	+	COL5A2	chr2	189975002	+
intron-3CDS	ENST00000389902	ENST00000374866		ChiTaRS3.1			AI742044	RNF216	chr7	5659833	+	COL5A2	chr2	189975002	+
intron-3CDS	ENST00000469375	ENST00000374866		ChiTaRS3.1			AI742044	RNF216	chr7	5659833	+	COL5A2	chr2	189975002	+
intron-5UTR	ENST00000378060	ENST00000244221		ChiTaRS3.1			AK094335	VPS36	chr13	53004085	-	PAIP2B	chr2	71454201	-
intron-5UTR	ENST00000480923	ENST00000244221		ChiTaRS3.1			AK094335	VPS36	chr13	53004085	-	PAIP2B	chr2	71454201	-
intron-5UTR	ENST00000394524	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000394524	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000394524	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000454265	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000454265	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000454265	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000394526	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000394526	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000394526	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000429180	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000429180	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000429180	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000296402	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000296402	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000296402	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000418639	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000418639	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000418639	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000511664	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000511664	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000511664	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000342666	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000342666	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000342666	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000515496	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000515496	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000515496	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000514328	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000514328	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000514328	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000394522	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000394522	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000394522	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000505990	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000505990	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000505990	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000379773	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000379773	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000379773	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000508738	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000508738	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000508738	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000509907	ENST00000268182		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-5UTR	ENST00000509907	ENST00000560738		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-intron	ENST00000509907	ENST00000560020		ChiTaRS3.1			L33075	CAMK2D	chr4	114615498	-	IQGAP1	chr15	90931501	+
intron-3CDS	ENST00000372862	ENST00000259056		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-intron	ENST00000372862	ENST00000463418		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-3CDS	ENST00000372858	ENST00000259056		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-intron	ENST00000372858	ENST00000463418		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-3CDS	ENST00000372857	ENST00000259056		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-intron	ENST00000372857	ENST00000463418		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-3CDS	ENST00000372856	ENST00000259056		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-intron	ENST00000372856	ENST00000463418		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-3CDS	ENST00000529216	ENST00000259056		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
intron-intron	ENST00000529216	ENST00000463418		ChiTaRS3.1			BF109407	PABPC4	chr1	40034548	+	GALNT5	chr2	158115854	-
3UTR-3CDS	ENST00000344921	ENST00000259396		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-intron	ENST00000344921	ENST00000538816		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-intron	ENST00000344921	ENST00000477456		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-3CDS	ENST00000263121	ENST00000259396		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-intron	ENST00000263121	ENST00000538816		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-intron	ENST00000263121	ENST00000477456		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-3CDS	ENST00000407422	ENST00000259396		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-intron	ENST00000407422	ENST00000538816		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
3UTR-intron	ENST00000407422	ENST00000477456		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-3CDS	ENST00000407082	ENST00000259396		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-intron	ENST00000407082	ENST00000538816		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-intron	ENST00000407082	ENST00000477456		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-3CDS	ENST00000477836	ENST00000259396		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-intron	ENST00000477836	ENST00000538816		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-intron	ENST00000477836	ENST00000477456		ChiTaRS3.1			BM684983	SMARCB1	chr22	24176557	-	ORM1	chr9	117088620	-
intron-intron	ENST00000337147	ENST00000367249		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-5UTR	ENST00000337147	ENST00000497655		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-intron	ENST00000367075	ENST00000367249		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-5UTR	ENST00000367075	ENST00000497655		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-intron	ENST00000392177	ENST00000367249		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-5UTR	ENST00000392177	ENST00000497655		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-intron	ENST00000476189	ENST00000367249		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
intron-5UTR	ENST00000476189	ENST00000497655		ChiTaRS3.1			BE140557	EZR	chr6	159191868	-	CYB5R1	chr1	202932950	-
In-frame	ENST00000532317	ENST00000446906		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000532317	ENST00000377072		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000532317	ENST00000307729		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000532317	ENST00000377059		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000532317	ENST00000495130		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000532317	ENST00000377100		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000532317	ENST00000377091		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000526033	ENST00000446906		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000526033	ENST00000377072		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000526033	ENST00000307729		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000526033	ENST00000377059		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000526033	ENST00000495130		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000526033	ENST00000377100		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000526033	ENST00000377091		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000393346	ENST00000446906		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000393346	ENST00000377072		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000393346	ENST00000307729		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000393346	ENST00000377059		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000393346	ENST00000495130		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000393346	ENST00000377100		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000393346	ENST00000377091		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
Frame-shit	ENST00000528398	ENST00000446906		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
Frame-shit	ENST00000528398	ENST00000377072		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
Frame-shit	ENST00000528398	ENST00000307729		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
Frame-shit	ENST00000528398	ENST00000377059		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000528398	ENST00000495130		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000528398	ENST00000377100		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000528398	ENST00000377091		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000356360	ENST00000446906		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000356360	ENST00000377072		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000356360	ENST00000307729		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
In-frame	ENST00000356360	ENST00000377059		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000356360	ENST00000495130		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000356360	ENST00000377100		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000356360	ENST00000377091		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000528411	ENST00000446906		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000528411	ENST00000377072		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000528411	ENST00000307729		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000528411	ENST00000377059		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-intron	ENST00000528411	ENST00000495130		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-intron	ENST00000528411	ENST00000377100		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
intron-intron	ENST00000528411	ENST00000377091		ChiTaRS3.1			EF051633	PICALM	chr11	85685751	-	MLLT10	chr10	21959376	+
5CDS-5UTR	ENST00000355831	ENST00000394702		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000355831	ENST00000331242		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000355831	ENST00000413276		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000355831	ENST00000411766		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000355831	ENST00000432937		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000355831	ENST00000394703		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-3UTR	ENST00000355831	ENST00000580710		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000355831	ENST00000414194		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000394702		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000331242		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000413276		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000411766		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000432937		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000394703		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-3UTR	ENST00000343439	ENST00000580710		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000343439	ENST00000414194		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000394702		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000331242		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000413276		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000411766		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000432937		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000394703		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-3UTR	ENST00000392782	ENST00000580710		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392782	ENST00000414194		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000394702		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000331242		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000413276		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000411766		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000432937		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000394703		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-3UTR	ENST00000392783	ENST00000580710		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-5UTR	ENST00000392783	ENST00000414194		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000394702		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000331242		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000413276		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000411766		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000432937		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000394703		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-3UTR	ENST00000483316	ENST00000580710		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5UTR-5UTR	ENST00000483316	ENST00000414194		ChiTaRS3.1			DB236588	BAZ2B	chr2	160335086	-	DMTF1	chr7	86792810	+
5CDS-3UTR	ENST00000368433	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000368433	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000368433	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000368433	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-3UTR	ENST00000315144	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000315144	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000315144	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000315144	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-3UTR	ENST00000368432	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000368432	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000368432	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000368432	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-3UTR	ENST00000368431	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-intron	ENST00000368431	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-intron	ENST00000368431	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-intron	ENST00000368431	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-3UTR	ENST00000292180	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000292180	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000292180	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000292180	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-3UTR	ENST00000487371	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-intron	ENST00000487371	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-intron	ENST00000487371	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
intron-intron	ENST00000487371	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-3UTR	ENST00000405236	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000405236	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000405236	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000405236	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-3UTR	ENST00000295530	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000295530	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000295530	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5CDS-intron	ENST00000295530	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5UTR-3UTR	ENST00000368428	ENST00000317216		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5UTR-intron	ENST00000368428	ENST00000522910		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5UTR-intron	ENST00000368428	ENST00000519492		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
5UTR-intron	ENST00000368428	ENST00000524088		ChiTaRS3.1			AV749172	FLAD1	chr1	154962672	+	EGR3	chr8	22546250	-
In-frame	ENST00000540235	ENST00000264414		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
In-frame	ENST00000540235	ENST00000344951		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
In-frame	ENST00000540235	ENST00000409096		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
In-frame	ENST00000540235	ENST00000409777		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
5CDS-intron	ENST00000540235	ENST00000432260		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393930	ENST00000264414		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393930	ENST00000344951		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393930	ENST00000409096		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393930	ENST00000409777		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-intron	ENST00000393930	ENST00000432260		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393931	ENST00000264414		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393931	ENST00000344951		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393931	ENST00000409096		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000393931	ENST00000409777		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-intron	ENST00000393931	ENST00000432260		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000310706	ENST00000264414		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000310706	ENST00000344951		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000310706	ENST00000409096		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-3CDS	ENST00000310706	ENST00000409777		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
intron-intron	ENST00000310706	ENST00000432260		ChiTaRS3.1			BE717377	JUP	chr17	39777218	-	CUL3	chr2	225346688	-
In-frame	ENST00000395135	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000395135	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000395132	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000395132	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395132	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395132	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395132	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395132	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000268059	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000268059	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000354026	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000354026	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000268058	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000268058	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000565898	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000565898	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000569477	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000569477	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000569965	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000569965	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000567543	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000567543	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000567543	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000567543	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000567543	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000567543	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000435786	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000435786	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000436891	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000436891	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000564428	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000564428	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000359928	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000359928	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000359928	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000359928	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000359928	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000359928	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000563500	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
In-frame	ENST00000563500	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000569161	ENST00000254066		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000569161	ENST00000394089		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000425707		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000394086		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000394081		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000420042		ChiTaRS3.1			M73779	PML	chr15	74315749	+	RARA	chr17	38504566	+
intron-intron	ENST00000392138	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000392138	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000590414	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000339503	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000536220	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000357309	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000585724	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000599227		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000269829		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000594384		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596597		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596825		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000333581		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000599953		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596652		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000600044		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000600220		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000596929		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000595981		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
intron-intron	ENST00000480587	ENST00000415203		ChiTaRS3.1			BG572864	ZNF573	chr19	38230977	-	ZNF544	chr19	58771057	-
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000354520	ENST00000395146		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000354520	ENST00000307808		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AF492832	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
3UTR-3UTR	ENST00000558401	ENST00000319622		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000558401	ENST00000565184		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000558401	ENST00000389093		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000558401	ENST00000335181		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000558401	ENST00000568883		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-intron	ENST00000558401	ENST00000449901		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-intron	ENST00000558401	ENST00000565154		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-intron	ENST00000558401	ENST00000568459		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000559916	ENST00000319622		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000559916	ENST00000565184		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000559916	ENST00000389093		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000559916	ENST00000335181		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000559916	ENST00000568883		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-intron	ENST00000559916	ENST00000449901		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-intron	ENST00000559916	ENST00000565154		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-intron	ENST00000559916	ENST00000568459		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000544417	ENST00000319622		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000544417	ENST00000565184		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000544417	ENST00000389093		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000544417	ENST00000335181		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-3UTR	ENST00000544417	ENST00000568883		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-intron	ENST00000544417	ENST00000449901		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-intron	ENST00000544417	ENST00000565154		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
intron-intron	ENST00000544417	ENST00000568459		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000559220	ENST00000319622		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000559220	ENST00000565184		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000559220	ENST00000389093		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000559220	ENST00000335181		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-3UTR	ENST00000559220	ENST00000568883		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-intron	ENST00000559220	ENST00000449901		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-intron	ENST00000559220	ENST00000565154		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
3UTR-intron	ENST00000559220	ENST00000568459		ChiTaRS3.1			BI023877	B2M	chr15	45009974	+	PKM	chr15	72491384	+
Frame-shit	ENST00000254108	ENST00000393923		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000254108	ENST00000412622		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000254108	ENST00000431670		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000254108	ENST00000393925		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000254108	ENST00000481953		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000254108	ENST00000495180		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000254108	ENST00000478922		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000254108	ENST00000477695		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000254108	ENST00000470699		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000380244	ENST00000393923		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000380244	ENST00000412622		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000380244	ENST00000431670		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000380244	ENST00000393925		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000380244	ENST00000481953		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000380244	ENST00000495180		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000380244	ENST00000478922		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000380244	ENST00000477695		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000380244	ENST00000470699		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000568685	ENST00000393923		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000568685	ENST00000412622		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000568685	ENST00000431670		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000568685	ENST00000393925		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000568685	ENST00000481953		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
Frame-shit	ENST00000568685	ENST00000495180		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000568685	ENST00000478922		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000568685	ENST00000477695		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
5CDS-intron	ENST00000568685	ENST00000470699		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000474990	ENST00000393923		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000474990	ENST00000412622		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000474990	ENST00000431670		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000474990	ENST00000393925		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000474990	ENST00000481953		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000474990	ENST00000495180		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-intron	ENST00000474990	ENST00000478922		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-intron	ENST00000474990	ENST00000477695		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-intron	ENST00000474990	ENST00000470699		ChiTaRS3.1			CN418196	FUS	chr16	31195546	+	PHLDB2	chr3	111632288	+
intron-3CDS	ENST00000263694	ENST00000262746		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000263694	ENST00000319248		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-intron	ENST00000263694	ENST00000372079		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-5UTR	ENST00000263694	ENST00000483583		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000489853	ENST00000262746		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000489853	ENST00000319248		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-intron	ENST00000489853	ENST00000372079		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-5UTR	ENST00000489853	ENST00000483583		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000373720	ENST00000262746		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000373720	ENST00000319248		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-intron	ENST00000373720	ENST00000372079		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-5UTR	ENST00000373720	ENST00000483583		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000446633	ENST00000262746		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-3CDS	ENST00000446633	ENST00000319248		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-intron	ENST00000446633	ENST00000372079		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
intron-5UTR	ENST00000446633	ENST00000483583		ChiTaRS3.1			CN369906	SNRNP40	chr1	31762177	-	PRDX1	chr1	45981467	-
5CDS-5UTR	ENST00000361156	ENST00000389757		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000361156	ENST00000389759		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000361156	ENST00000495123		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000347108	ENST00000389757		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000347108	ENST00000389759		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000347108	ENST00000495123		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000361396	ENST00000389757		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000361396	ENST00000389759		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000361396	ENST00000495123		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000376829	ENST00000389757		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-5UTR	ENST00000376829	ENST00000389759		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
5CDS-intron	ENST00000376829	ENST00000495123		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-5UTR	ENST00000466027	ENST00000389757		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-5UTR	ENST00000466027	ENST00000389759		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-intron	ENST00000466027	ENST00000495123		ChiTaRS3.1			DA625799	DZIP1	chr13	96258256	-	PKP4	chr2	159389687	+
intron-3CDS	ENST00000435030	ENST00000546087		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000435030	ENST00000538183		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000435030	ENST00000367055		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000435030	ENST00000367054		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000435030	ENST00000444946		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000435030	ENST00000337404		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000435030	ENST00000452684		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000435030	ENST00000535372		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000414838	ENST00000546087		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000414838	ENST00000538183		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000414838	ENST00000367055		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000414838	ENST00000367054		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000414838	ENST00000444946		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000414838	ENST00000337404		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000414838	ENST00000452684		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000414838	ENST00000535372		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000464066	ENST00000546087		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000464066	ENST00000538183		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000464066	ENST00000367055		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000464066	ENST00000367054		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000464066	ENST00000444946		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000464066	ENST00000337404		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000464066	ENST00000452684		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000464066	ENST00000535372		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000397413	ENST00000546087		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000397413	ENST00000538183		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000397413	ENST00000367055		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000397413	ENST00000367054		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000397413	ENST00000444946		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000397413	ENST00000337404		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000397413	ENST00000452684		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-intron	ENST00000397413	ENST00000535372		ChiTaRS3.1			CD365980	KIF5C	chr2	149639327	+	SOD2	chr6	160105955	+
intron-3CDS	ENST00000397967	ENST00000263578		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000397967	ENST00000534011		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000397967	ENST00000442061		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000397967	ENST00000532125		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-3CDS	ENST00000340900	ENST00000263578		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000340900	ENST00000534011		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000340900	ENST00000442061		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000340900	ENST00000532125		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-3CDS	ENST00000412779	ENST00000263578		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000412779	ENST00000534011		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000412779	ENST00000442061		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000412779	ENST00000532125		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-3CDS	ENST00000555698	ENST00000263578		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000555698	ENST00000534011		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000555698	ENST00000442061		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000555698	ENST00000532125		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-3CDS	ENST00000397970	ENST00000263578		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000397970	ENST00000534011		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000397970	ENST00000442061		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-intron	ENST00000397970	ENST00000532125		ChiTaRS3.1			DA382217	RNASE1	chr14	21269756	-	FOXRED1	chr11	126141330	+
intron-3CDS	ENST00000322723	ENST00000242152		ChiTaRS3.1			AV718213	NCL	chr2	232323022	-	NPY	chr7	24331284	+
intron-3CDS	ENST00000322723	ENST00000407573		ChiTaRS3.1			AV718213	NCL	chr2	232323022	-	NPY	chr7	24331284	+
intron-3CDS	ENST00000322723	ENST00000405982		ChiTaRS3.1			AV718213	NCL	chr2	232323022	-	NPY	chr7	24331284	+
Frame-shit	ENST00000419197	ENST00000317011		ChiTaRS3.1			BC064340	PAFAH1B2	chr11	117023244	+	FOXR1	chr11	118849489	+
intron-3CDS	ENST00000526888	ENST00000317011		ChiTaRS3.1			BC064340	PAFAH1B2	chr11	117023244	+	FOXR1	chr11	118849489	+
Frame-shit	ENST00000527958	ENST00000317011		ChiTaRS3.1			BC064340	PAFAH1B2	chr11	117023244	+	FOXR1	chr11	118849489	+
Frame-shit	ENST00000529887	ENST00000317011		ChiTaRS3.1			BC064340	PAFAH1B2	chr11	117023244	+	FOXR1	chr11	118849489	+
Frame-shit	ENST00000530272	ENST00000317011		ChiTaRS3.1			BC064340	PAFAH1B2	chr11	117023244	+	FOXR1	chr11	118849489	+
5UTR-3UTR	ENST00000476844	ENST00000482108		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-intron	ENST00000476844	ENST00000488574		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000476844	ENST00000465184		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000492590	ENST00000482108		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-intron	ENST00000492590	ENST00000488574		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000492590	ENST00000465184		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000466788	ENST00000482108		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-intron	ENST00000466788	ENST00000488574		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000466788	ENST00000465184		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000468189	ENST00000482108		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-intron	ENST00000468189	ENST00000488574		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000468189	ENST00000465184		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000341848	ENST00000482108		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-intron	ENST00000341848	ENST00000488574		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000341848	ENST00000465184		ChiTaRS3.1			DB472087	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
3UTR-3UTR	ENST00000331825	ENST00000292205		ChiTaRS3.1			CA306727	FTL	chr19	49470079	-	ADAR	chr1	154556097	+
3UTR-3UTR	ENST00000331825	ENST00000368474		ChiTaRS3.1			CA306727	FTL	chr19	49470079	-	ADAR	chr1	154556097	+
3UTR-3UTR	ENST00000331825	ENST00000368471		ChiTaRS3.1			CA306727	FTL	chr19	49470079	-	ADAR	chr1	154556097	+
3UTR-intron	ENST00000331825	ENST00000471068		ChiTaRS3.1			CA306727	FTL	chr19	49470079	-	ADAR	chr1	154556097	+
intron-3CDS	ENST00000357736	ENST00000354546		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000357736	ENST00000523714		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000357736	ENST00000356496		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000357736	ENST00000377751		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000357736	ENST00000521512		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000357736	ENST00000519610		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000392366	ENST00000354546		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000392366	ENST00000523714		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000392366	ENST00000356496		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000392366	ENST00000377751		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000392366	ENST00000521512		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000392366	ENST00000519610		ChiTaRS3.1			AA193370	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
In-frame	ENST00000396373	ENST00000394480		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000557856		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000357724		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000355254		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000360948		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000542733		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
In-frame	ENST00000396373	ENST00000558676		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
5CDS-intron	ENST00000396373	ENST00000317501		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
5CDS-intron	ENST00000396373	ENST00000558306		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
5CDS-intron	ENST00000396373	ENST00000540489		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000394480		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000557856		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000357724		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000355254		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000360948		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000542733		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-3CDS	ENST00000544715	ENST00000558676		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-intron	ENST00000544715	ENST00000317501		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-intron	ENST00000544715	ENST00000558306		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
intron-intron	ENST00000544715	ENST00000540489		ChiTaRS3.1			AF041811	ETV6	chr12	12022903	+	NTRK3	chr15	88483987	-
Frame-shit	ENST00000521662	ENST00000356352		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000357604		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000397053		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521662	ENST00000460569		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000356352		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000357604		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000397053		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521688	ENST00000460569		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000356352		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000357604		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000397053		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000520147	ENST00000460569		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000356352		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000357604		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000397053		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-5UTR	ENST00000522407	ENST00000460569		ChiTaRS3.1			BQ438570	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-intron	ENST00000373045	ENST00000435921		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-3UTR	ENST00000373045	ENST00000541775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000373045	ENST00000536679		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000373045	ENST00000382215		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000373045	ENST00000545775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000373045	ENST00000535078		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000397631	ENST00000435921		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-3UTR	ENST00000397631	ENST00000541775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000397631	ENST00000536679		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000397631	ENST00000382215		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000397631	ENST00000545775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000397631	ENST00000535078		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-intron	ENST00000525897	ENST00000435921		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-3UTR	ENST00000525897	ENST00000541775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-intron	ENST00000525897	ENST00000536679		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-intron	ENST00000525897	ENST00000382215		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-intron	ENST00000525897	ENST00000545775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-intron	ENST00000525897	ENST00000535078		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000329006	ENST00000435921		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-3UTR	ENST00000329006	ENST00000541775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000329006	ENST00000536679		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000329006	ENST00000382215		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000329006	ENST00000545775		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
3UTR-intron	ENST00000329006	ENST00000535078		ChiTaRS3.1			BP229158	MANEAL	chr1	38266724	+	C1RL-AS1	chr12	7269242	+
intron-intron	ENST00000338154	ENST00000356842		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338154	ENST00000359629		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338154	ENST00000538214		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338154	ENST00000537768		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338154	ENST00000335712		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338154	ENST00000477659		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338154	ENST00000358510		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000356842		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000359629		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000538214		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000537768		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000335712		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000477659		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000357988	ENST00000358510		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000356842		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000359629		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000538214		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000537768		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000335712		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000477659		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000338946	ENST00000358510		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000356842		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000359629		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000538214		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000537768		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000335712		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000477659		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000322659	ENST00000358510		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000356842		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000359629		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000538214		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000537768		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000335712		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000477659		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-intron	ENST00000462182	ENST00000358510		ChiTaRS3.1			BF772185	PHF8	chrX	53964324	-	BCL11A	chr2	60756712	-
intron-3CDS	ENST00000356929	ENST00000261835		ChiTaRS3.1			AK095062	ZNF708	chr19	21475896	-	CYP46A1	chr14	100192913	+
intron-3CDS	ENST00000356929	ENST00000423126		ChiTaRS3.1			AK095062	ZNF708	chr19	21475896	-	CYP46A1	chr14	100192913	+
intron-3CDS	ENST00000356929	ENST00000554176		ChiTaRS3.1			AK095062	ZNF708	chr19	21475896	-	CYP46A1	chr14	100192913	+
intron-3UTR	ENST00000470110	ENST00000371993		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-3UTR	ENST00000470110	ENST00000356915		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-3UTR	ENST00000470110	ENST00000338081		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-intron	ENST00000470110	ENST00000356220		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-intron	ENST00000470110	ENST00000488120		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-intron	ENST00000470110	ENST00000496551		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-3UTR	ENST00000395216	ENST00000371993		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-3UTR	ENST00000395216	ENST00000356915		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-3UTR	ENST00000395216	ENST00000338081		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-intron	ENST00000395216	ENST00000356220		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-intron	ENST00000395216	ENST00000488120		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-intron	ENST00000395216	ENST00000496551		ChiTaRS3.1			BM678941	ZNF785	chr16	30590845	+	DCX	chrX	110539882	+
intron-3CDS	ENST00000295901	ENST00000369144		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000295901	ENST00000541549		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000492933	ENST00000369144		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000492933	ENST00000541549		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000394431	ENST00000369144		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000394431	ENST00000541549		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000482510	ENST00000369144		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000482510	ENST00000541549		ChiTaRS3.1			DA942713	PSMD6	chr3	64008050	-	EIF3A	chr10	120809487	-
intron-3CDS	ENST00000430249	ENST00000356951		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-3CDS	ENST00000430249	ENST00000298510		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-intron	ENST00000430249	ENST00000494433		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
5UTR-3CDS	ENST00000233072	ENST00000356951		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
5UTR-3CDS	ENST00000233072	ENST00000298510		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
5UTR-intron	ENST00000233072	ENST00000494433		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-3CDS	ENST00000451903	ENST00000356951		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-3CDS	ENST00000451903	ENST00000298510		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-intron	ENST00000451903	ENST00000494433		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-3CDS	ENST00000497121	ENST00000356951		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-3CDS	ENST00000497121	ENST00000298510		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
intron-intron	ENST00000497121	ENST00000494433		ChiTaRS3.1			AV694689	CPS1	chr2	211421447	+	PRDX3	chr10	120931984	-
3UTR-3UTR	ENST00000380183	ENST00000246533		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000380183	ENST00000589146		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000380183	ENST00000587718		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000380183	ENST00000590874		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000380183	ENST00000588815		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000380183	ENST00000588780		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000572022	ENST00000246533		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000572022	ENST00000589146		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000572022	ENST00000587718		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000572022	ENST00000590874		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000572022	ENST00000588815		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000572022	ENST00000588780		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000380173	ENST00000246533		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000380173	ENST00000589146		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000380173	ENST00000587718		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000380173	ENST00000590874		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-3UTR	ENST00000380173	ENST00000588815		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
3UTR-intron	ENST00000380173	ENST00000588780		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
intron-3UTR	ENST00000573359	ENST00000246533		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
intron-intron	ENST00000573359	ENST00000589146		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
intron-3UTR	ENST00000573359	ENST00000587718		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
intron-intron	ENST00000573359	ENST00000590874		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
intron-3UTR	ENST00000573359	ENST00000588815		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
intron-intron	ENST00000573359	ENST00000588780		ChiTaRS3.1			BF737723	ALOX15B	chr17	7952039	+	CAPNS1	chr19	36640996	+
Frame-shit	ENST00000394440	ENST00000343245		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000394440	ENST00000369070		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000394440	ENST00000369076		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5CDS-3UTR	ENST00000394440	ENST00000360666		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5CDS-5UTR	ENST00000394440	ENST00000475645		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
intron-3CDS	ENST00000461540	ENST00000343245		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
intron-3CDS	ENST00000461540	ENST00000369070		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
intron-3CDS	ENST00000461540	ENST00000369076		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
intron-3UTR	ENST00000461540	ENST00000360666		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
intron-5UTR	ENST00000461540	ENST00000475645		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000544079	ENST00000343245		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000544079	ENST00000369070		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000544079	ENST00000369076		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5CDS-3UTR	ENST00000544079	ENST00000360666		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5CDS-5UTR	ENST00000544079	ENST00000475645		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5UTR-3CDS	ENST00000544185	ENST00000343245		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5UTR-3CDS	ENST00000544185	ENST00000369070		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5UTR-3CDS	ENST00000544185	ENST00000369076		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5UTR-3UTR	ENST00000544185	ENST00000360666		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5UTR-5UTR	ENST00000544185	ENST00000475645		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
In-frame	ENST00000538252	ENST00000343245		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000538252	ENST00000369070		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
Frame-shit	ENST00000538252	ENST00000369076		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5CDS-3UTR	ENST00000538252	ENST00000360666		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
5CDS-5UTR	ENST00000538252	ENST00000475645		ChiTaRS3.1			AI814482	CCT4	chr2	62112155	-	ATG5	chr6	106634552	-
intron-3CDS	ENST00000452313	ENST00000323348		ChiTaRS3.1			DB119802	NPIPB7	chr16	28997058	+	ANKZF1	chr2	220098890	+
intron-3CDS	ENST00000452313	ENST00000409849		ChiTaRS3.1			DB119802	NPIPB7	chr16	28997058	+	ANKZF1	chr2	220098890	+
intron-3CDS	ENST00000452313	ENST00000410034		ChiTaRS3.1			DB119802	NPIPB7	chr16	28997058	+	ANKZF1	chr2	220098890	+
intron-3UTR	ENST00000372876	ENST00000573001		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000372876	ENST00000326577		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000372876	ENST00000341627		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000372876	ENST00000575124		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000244625	ENST00000573001		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000244625	ENST00000326577		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000244625	ENST00000341627		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
intron-3UTR	ENST00000244625	ENST00000575124		ChiTaRS3.1			BQ670175	TBCC	chr6	42712531	-	TNFRSF12A	chr16	3072058	+
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			BU943989	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000370103	ENST00000491071		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000348717		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000518273		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000522291		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000517960		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000521978		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000520567		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000264839		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000401910		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000523963		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000425662		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000517827		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
Frame-shit	ENST00000370103	ENST00000538414		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5CDS-3UTR	ENST00000370103	ENST00000431478		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5CDS-5UTR	ENST00000370103	ENST00000414192		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000491071		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000348717		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000518273		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000522291		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000517960		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000521978		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000520567		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000264839		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000401910		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000523963		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000425662		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000517827		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3CDS	ENST00000462354	ENST00000538414		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-3UTR	ENST00000462354	ENST00000431478		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
5UTR-5UTR	ENST00000462354	ENST00000414192		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000491071		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000348717		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000518273		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000522291		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000517960		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000521978		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000520567		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000264839		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000401910		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000523963		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000425662		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000517827		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000536598	ENST00000538414		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3UTR	ENST00000536598	ENST00000431478		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-5UTR	ENST00000536598	ENST00000414192		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000491071		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000348717		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000518273		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000522291		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000517960		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000521978		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000520567		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000264839		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000401910		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000523963		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000425662		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000517827		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000338858	ENST00000538414		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3UTR	ENST00000338858	ENST00000431478		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-5UTR	ENST00000338858	ENST00000414192		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000491071		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000348717		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000518273		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000522291		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000517960		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000521978		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000520567		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000264839		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000401910		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000523963		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000425662		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000517827		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3CDS	ENST00000359814	ENST00000538414		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3UTR	ENST00000359814	ENST00000431478		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-5UTR	ENST00000359814	ENST00000414192		ChiTaRS3.1			DA062426	OLFM3	chr1	102462304	-	RIMS1	chr6	73100298	+
intron-3UTR	ENST00000375640	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375640	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375640	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375640	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375641	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375641	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375641	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375641	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375638	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375638	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375638	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375638	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375635	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375635	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375635	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375635	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375639	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375639	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375639	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375639	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375642	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375642	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375642	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375642	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000395789	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000395789	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000395789	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000395789	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375633	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375633	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000375633	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000375633	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000395788	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000395788	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000395788	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000395788	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000424962	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000424962	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000424962	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000424962	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000456268	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000456268	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000456268	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000456268	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000435938	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000435938	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000435938	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000435938	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000433752	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000433752	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000433752	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000433752	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000458514	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000458514	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000458514	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000458514	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000549426	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000549426	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000549426	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000549426	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000550200	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000550200	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000550200	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000550200	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000430690	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000430690	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000430690	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000430690	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000436558	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000436558	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000436558	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000436558	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000456690	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000456690	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000456690	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000456690	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000439907	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000439907	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000439907	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000439907	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000444974	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000444974	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000444974	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000444974	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000439865	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000439865	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000439865	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000439865	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000413638	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000413638	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000413638	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000413638	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000423640	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000423640	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000423640	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000423640	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000444192	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000444192	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000444192	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000444192	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000551797	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000551797	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000551797	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000551797	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000552514	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000552514	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000552514	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000552514	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000440361	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000440361	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000440361	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000440361	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000443974	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000443974	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000443974	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000443974	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000416886	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000416886	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000416886	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000416886	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000436205	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000436205	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000436205	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000436205	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000450610	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000450610	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000450610	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000450610	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000433697	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000433697	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000433697	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000433697	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000414434	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000414434	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000414434	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000414434	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000421605	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000421605	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000421605	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000421605	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000444331	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000444331	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000444331	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000444331	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000551957	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000551957	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000551957	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000551957	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000550492	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000550492	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000550492	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000550492	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000423916	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000423916	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000423916	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000423916	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000436495	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000436495	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000436495	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000436495	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000426843	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000426843	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000426843	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000426843	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000421039	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000421039	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000421039	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000421039	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000414536	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000414536	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000414536	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000414536	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000400038	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000400038	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000400038	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000400038	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000383384	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000383384	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000383384	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000383384	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000383385	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000383385	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000383385	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000383385	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000383383	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000383383	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000383383	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000383383	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-3UTR	ENST00000547624	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-intron	ENST00000547624	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-intron	ENST00000547624	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-3UTR	ENST00000547624	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-3UTR	ENST00000550685	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-intron	ENST00000550685	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-intron	ENST00000550685	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5CDS-3UTR	ENST00000550685	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000400037	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000400037	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000400037	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000400037	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000400035	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000400035	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-intron	ENST00000400035	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
5UTR-3UTR	ENST00000400035	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000400034	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000400034	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000400034	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000400034	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000400039	ENST00000558401		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000400039	ENST00000559916		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-intron	ENST00000400039	ENST00000544417		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3UTR	ENST00000400039	ENST00000559220		ChiTaRS3.1			CB959220	C6orf48	chr6	3096425	+	B2M	chr15	45010033	+
intron-3CDS	ENST00000370812	ENST00000361961		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370812	ENST00000395670		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370812	ENST00000544797		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370812	ENST00000361418		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370812	ENST00000541463		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-intron	ENST00000370812	ENST00000547745		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000445065	ENST00000361961		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000445065	ENST00000395670		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000445065	ENST00000544797		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000445065	ENST00000361418		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000445065	ENST00000541463		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-intron	ENST00000445065	ENST00000547745		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370813	ENST00000361961		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370813	ENST00000395670		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370813	ENST00000544797		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370813	ENST00000361418		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000370813	ENST00000541463		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-intron	ENST00000370813	ENST00000547745		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000359130	ENST00000361961		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000359130	ENST00000395670		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000359130	ENST00000544797		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000359130	ENST00000361418		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000359130	ENST00000541463		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-intron	ENST00000359130	ENST00000547745		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000478391	ENST00000361961		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000478391	ENST00000395670		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000478391	ENST00000544797		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000478391	ENST00000361418		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000478391	ENST00000541463		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-intron	ENST00000478391	ENST00000547745		ChiTaRS3.1			CB243604	PIGK	chr1	77595295	-	KIF21A	chr12	39726154	+
intron-3CDS	ENST00000519807	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519807	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519807	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519807	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000009589	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000009589	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000009589	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000009589	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000524349	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000524349	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000524349	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000524349	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520490	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520490	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520490	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520490	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520627	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520627	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520627	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000520627	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000521262	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000521262	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000521262	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000521262	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000523936	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000523936	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000523936	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000523936	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519606	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519606	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519606	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000519606	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000518875	ENST00000601423		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000518875	ENST00000598418		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000518875	ENST00000391815		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
intron-3CDS	ENST00000518875	ENST00000595669		ChiTaRS3.1			BM842093	RPS20	chr8	56986306	-	JOSD2	chr19	51009492	-
Frame-shit	ENST00000356805	ENST00000316084		ChiTaRS3.1			BF812451	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-5UTR	ENST00000356805	ENST00000486733		ChiTaRS3.1			BF812451	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-intron	ENST00000356805	ENST00000373626		ChiTaRS3.1			BF812451	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
Frame-shit	ENST00000333896	ENST00000316084		ChiTaRS3.1			BF812451	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-5UTR	ENST00000333896	ENST00000486733		ChiTaRS3.1			BF812451	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-intron	ENST00000333896	ENST00000373626		ChiTaRS3.1			BF812451	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
intron-5UTR	ENST00000264211	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000400422	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000602326	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000374935	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000374937	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000536266	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000374933	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000544689	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000356916	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000374927	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
intron-5UTR	ENST00000537738	ENST00000175091		ChiTaRS3.1			BP326154	EIF4G3	chr1	21268407	-	LAPTM4A	chr2	20251361	-
Frame-shit	ENST00000276603	ENST00000251527		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
5CDS-intron	ENST00000276603	ENST00000497111		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
5CDS-intron	ENST00000276603	ENST00000435514		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
In-frame	ENST00000276602	ENST00000251527		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
5CDS-intron	ENST00000276602	ENST00000497111		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
5CDS-intron	ENST00000276602	ENST00000435514		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
intron-3CDS	ENST00000520783	ENST00000251527		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
intron-intron	ENST00000520783	ENST00000497111		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
intron-intron	ENST00000520783	ENST00000435514		ChiTaRS3.1			BF817571	TERF1	chr8	73958302	+	ESYT2	chr7	158529813	-
intron-3CDS	ENST00000373699	ENST00000539317		ChiTaRS3.1			DB033860	PPIL1	chr6	36823774	-	SMAP2	chr1	40881912	+
intron-intron	ENST00000373699	ENST00000487871		ChiTaRS3.1			DB033860	PPIL1	chr6	36823774	-	SMAP2	chr1	40881912	+
intron-3CDS	ENST00000483552	ENST00000539317		ChiTaRS3.1			DB033860	PPIL1	chr6	36823774	-	SMAP2	chr1	40881912	+
intron-intron	ENST00000483552	ENST00000487871		ChiTaRS3.1			DB033860	PPIL1	chr6	36823774	-	SMAP2	chr1	40881912	+
3UTR-3UTR	ENST00000296161	ENST00000374975		ChiTaRS3.1			AX748303	DTX3L	chr3	122293268	+	HLA-DRB5	chr6	32485331	-
intron-3UTR	ENST00000383661	ENST00000374975		ChiTaRS3.1			AX748303	DTX3L	chr3	122293268	+	HLA-DRB5	chr6	32485331	-
5CDS-5UTR	ENST00000413644	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000413644	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000413644	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000368961	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000368961	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000368961	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000310786	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000310786	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000310786	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000275080	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000275080	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000275080	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000324953	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000324953	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000324953	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000512821	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000512821	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
5CDS-5UTR	ENST00000512821	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-5UTR	ENST00000504373	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-5UTR	ENST00000504373	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-5UTR	ENST00000504373	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-5UTR	ENST00000506649	ENST00000369472		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-5UTR	ENST00000506649	ENST00000336032		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-5UTR	ENST00000506649	ENST00000354922		ChiTaRS3.1			BU655987	CD164	chr6	109703405	-	PNRC1	chr6	89793470	+
intron-3CDS	ENST00000536769	ENST00000368301		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000361308		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000347559		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000368300		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000368299		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000448611		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000368297		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000473598		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536769	ENST00000392353		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-intron	ENST00000536769	ENST00000496738		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000368301		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000361308		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000347559		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000368300		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000368299		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000448611		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000368297		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000473598		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000538617	ENST00000392353		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-intron	ENST00000538617	ENST00000496738		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000368301		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000361308		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000347559		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000368300		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000368299		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000448611		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000368297		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000473598		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000546120	ENST00000392353		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-intron	ENST00000546120	ENST00000496738		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000368301		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000361308		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000347559		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000368300		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000368299		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000448611		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000368297		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000473598		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000339647	ENST00000392353		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-intron	ENST00000339647	ENST00000496738		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000368301		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000361308		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000347559		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000368300		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000368299		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000448611		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000368297		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000473598		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-3CDS	ENST00000536661	ENST00000392353		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
intron-intron	ENST00000536661	ENST00000496738		ChiTaRS3.1			DA586628	UBC	chr12	125398788	-	LMNA	chr1	156104269	+
3UTR-intron	ENST00000490386	ENST00000452313		ChiTaRS3.1			AW316808	CLEC3B	chr3	45077442	-	NPIPB7	chr16	28877973	-
3UTR-intron	ENST00000296130	ENST00000452313		ChiTaRS3.1			AW316808	CLEC3B	chr3	45077442	-	NPIPB7	chr16	28877973	-
3UTR-intron	ENST00000428034	ENST00000452313		ChiTaRS3.1			AW316808	CLEC3B	chr3	45077442	-	NPIPB7	chr16	28877973	-
intron-3CDS	ENST00000602866	ENST00000432648		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-3CDS	ENST00000602866	ENST00000446189		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-intron	ENST00000602866	ENST00000372984		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-3CDS	ENST00000298852	ENST00000432648		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-3CDS	ENST00000298852	ENST00000446189		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-intron	ENST00000298852	ENST00000372984		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-3CDS	ENST00000530912	ENST00000432648		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-3CDS	ENST00000530912	ENST00000446189		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
intron-intron	ENST00000530912	ENST00000372984		ChiTaRS3.1			BG248359	PSMC3	chr11	47446742	-	AKIRIN1	chr1	39463845	+
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BE779978	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
3UTR-3UTR	ENST00000540080	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000540080	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-3UTR	ENST00000433436	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000433436	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-3UTR	ENST00000538225	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000538225	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-3UTR	ENST00000345519	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000345519	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-3UTR	ENST00000470744	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000470744	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-3UTR	ENST00000242285	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000242285	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
intron-3UTR	ENST00000466396	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
intron-intron	ENST00000466396	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-3UTR	ENST00000396603	ENST00000393085		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
3UTR-intron	ENST00000396603	ENST00000435723		ChiTaRS3.1			AA993687	CLTA	chr9	36211887	-	MTPN	chr7	135613585	+
Frame-shit	ENST00000224167	ENST00000223364		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
Frame-shit	ENST00000224167	ENST00000458240		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
5CDS-5UTR	ENST00000224167	ENST00000434895		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
Frame-shit	ENST00000371625	ENST00000223364		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
Frame-shit	ENST00000371625	ENST00000458240		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
5CDS-5UTR	ENST00000371625	ENST00000434895		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
intron-3CDS	ENST00000460340	ENST00000223364		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
intron-3CDS	ENST00000460340	ENST00000458240		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
intron-5UTR	ENST00000460340	ENST00000434895		ChiTaRS3.1			AJ711203	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
5CDS-intron	ENST00000230050	ENST00000541742		ChiTaRS3.1			BP319882	RPS12	chr6	133138703	+	SMYD3	chr1	246433184	-
5CDS-intron	ENST00000230050	ENST00000490107		ChiTaRS3.1			BP319882	RPS12	chr6	133138703	+	SMYD3	chr1	246433184	-
5CDS-intron	ENST00000230050	ENST00000388985		ChiTaRS3.1			BP319882	RPS12	chr6	133138703	+	SMYD3	chr1	246433184	-
5CDS-intron	ENST00000230050	ENST00000366517		ChiTaRS3.1			BP319882	RPS12	chr6	133138703	+	SMYD3	chr1	246433184	-
5CDS-intron	ENST00000230050	ENST00000403792		ChiTaRS3.1			BP319882	RPS12	chr6	133138703	+	SMYD3	chr1	246433184	-
In-frame	ENST00000318522	ENST00000389048		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
In-frame	ENST00000402711	ENST00000389048		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000482660	ENST00000389048		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
In-frame	ENST00000401738	ENST00000389048		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
In-frame	ENST00000453191	ENST00000389048		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
5CDS-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			AB275889	EML4	chr2	42552694	+	ALK	chr2	29446394	-
intron-3CDS	ENST00000306732	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
intron-3CDS	ENST00000394598	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
intron-3CDS	ENST00000355080	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
intron-3CDS	ENST00000354925	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
intron-3CDS	ENST00000394595	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
Frame-shit	ENST00000557119	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
intron-3CDS	ENST00000556049	ENST00000200453		ChiTaRS3.1			BC007987	PITX2	chr4	111541433	-	PPP1R15A	chr19	49377702	+
intron-3UTR	ENST00000264951	ENST00000299314		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000264951	ENST00000549940		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000264951	ENST00000392919		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000264951	ENST00000549165		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000392981	ENST00000299314		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000392981	ENST00000549940		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000392981	ENST00000392919		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000392981	ENST00000549165		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000463916	ENST00000299314		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000463916	ENST00000549940		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000463916	ENST00000392919		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000463916	ENST00000549165		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000544157	ENST00000299314		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000544157	ENST00000549940		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000544157	ENST00000392919		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000544157	ENST00000549165		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000465074	ENST00000299314		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000465074	ENST00000549940		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000465074	ENST00000392919		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000465074	ENST00000549165		ChiTaRS3.1			AI871771	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000309311	ENST00000409306		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-3UTR	ENST00000309311	ENST00000375551		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-3UTR	ENST00000309311	ENST00000375559		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-intron	ENST00000309311	ENST00000483537		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-3UTR	ENST00000600720	ENST00000409306		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-3UTR	ENST00000600720	ENST00000375551		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-3UTR	ENST00000600720	ENST00000375559		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-intron	ENST00000600720	ENST00000483537		ChiTaRS3.1			N93529	EEF2	chr19	3976177	+	F10	chr13	113803434	-
intron-intron	ENST00000358252	ENST00000327495		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000358252	ENST00000595140		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000358252	ENST00000490592		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000532437	ENST00000327495		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000532437	ENST00000595140		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000532437	ENST00000490592		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000530920	ENST00000327495		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000530920	ENST00000595140		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-intron	ENST00000530920	ENST00000490592		ChiTaRS3.1			BG436080	TNKS1BP1	chr11	57083289	-	PSG3	chr19	43411312	-
intron-3CDS	ENST00000359486	ENST00000456845		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000359486	ENST00000412303		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000359486	ENST00000456397		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000359486	ENST00000397070		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-5UTR	ENST00000359486	ENST00000522434		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000456845		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000412303		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000456397		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000335626	ENST00000397070		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-5UTR	ENST00000335626	ENST00000522434		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000456845		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000412303		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000456397		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-3CDS	ENST00000404876	ENST00000397070		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
intron-5UTR	ENST00000404876	ENST00000522434		ChiTaRS3.1			BE714961	TCF20	chr22	42575624	-	TM2D2	chr8	38851111	-
In-frame	ENST00000366987	ENST00000560829		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000353874		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000261889		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000559844		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000561026		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366987	ENST00000559339		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000341491	ENST00000560829		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000353874		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000261889		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000559844		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000561026		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000341491	ENST00000559339		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000366985	ENST00000560829		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000353874		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000261889		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000559844		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000561026		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366985	ENST00000559339		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-3CDS	ENST00000492118	ENST00000560829		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000353874		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000261889		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000559844		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000561026		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
intron-intron	ENST00000492118	ENST00000559339		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000336937	ENST00000560829		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000353874		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000261889		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000559844		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000561026		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000336937	ENST00000559339		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
In-frame	ENST00000366983	ENST00000560829		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000353874		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000261889		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000559844		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000561026		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
5CDS-intron	ENST00000366983	ENST00000559339		ChiTaRS3.1			AW998147	ATF3	chr1	212791575	+	SNX1	chr15	64426920	+
Frame-shit	ENST00000417037	ENST00000360772		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000417037	ENST00000359169		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000417037	ENST00000360304		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000418370		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000578202		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000354792		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000346322		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000583087		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000475616		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000417037	ENST00000510775		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000396334	ENST00000360772		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000396334	ENST00000359169		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000396334	ENST00000360304		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000418370		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000578202		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000354792		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000346322		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000583087		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000475616		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000396334	ENST00000510775		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000424893	ENST00000360772		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000424893	ENST00000359169		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000424893	ENST00000360304		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000418370		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000578202		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000354792		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000346322		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000583087		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000475616		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000424893	ENST00000510775		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000495303	ENST00000360772		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000495303	ENST00000359169		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-3CDS	ENST00000495303	ENST00000360304		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000418370		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000578202		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000354792		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000346322		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000583087		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000475616		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
intron-intron	ENST00000495303	ENST00000510775		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000443433	ENST00000360772		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000443433	ENST00000359169		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
Frame-shit	ENST00000443433	ENST00000360304		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000418370		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000578202		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000354792		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000346322		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000583087		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000475616		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
5CDS-intron	ENST00000443433	ENST00000510775		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-3CDS	ENST00000481122	ENST00000360772		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-3CDS	ENST00000481122	ENST00000359169		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-3CDS	ENST00000481122	ENST00000360304		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000418370		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000578202		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000354792		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000346322		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000583087		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000475616		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
3UTR-intron	ENST00000481122	ENST00000510775		ChiTaRS3.1			BP285886	MYD88	chr3	38181436	+	MYLK	chr3	123383107	-
In-frame	ENST00000358127	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000358127	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000358127	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000358127	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000358127	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000358127	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000358127	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000358127	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000358127	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000523241	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000523241	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000523241	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000523241	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523241	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523241	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523241	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523241	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523241	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520154	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520154	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520154	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520154	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520154	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520154	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520154	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520154	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520154	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377852	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377852	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377852	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377852	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377852	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377852	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377852	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377852	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377852	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377853	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377853	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377853	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377853	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377853	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377853	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377853	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377853	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377853	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000522003	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000522003	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000522003	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000522003	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000522003	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000522003	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000522003	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000522003	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000522003	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520281	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520281	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520281	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000520281	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520281	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520281	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520281	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520281	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000520281	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000414447	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000414447	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000414447	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000414447	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000414447	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000414447	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000414447	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000414447	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000414447	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000523145	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000523145	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000523145	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000523145	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523145	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523145	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523145	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523145	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000523145	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000446742	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000446742	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000446742	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000446742	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000446742	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000446742	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000446742	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000446742	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000446742	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377847	ENST00000318789		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377847	ENST00000475937		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377847	ENST00000493089		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
In-frame	ENST00000377847	ENST00000484350		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377847	ENST00000318779		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377847	ENST00000491238		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377847	ENST00000498215		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377847	ENST00000468577		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
5CDS-intron	ENST00000377847	ENST00000472382		ChiTaRS3.1			DQ845346	PAX5	chr9	36966545	-	FOXP1	chr3	71161791	-
Frame-shit	ENST00000258886	ENST00000445937		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000258886	ENST00000531443		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000258886	ENST00000517566		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000258886	ENST00000452423		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000258886	ENST00000442977		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000521963		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000312046		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000449762		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000297447		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000521592		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000497705		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000560440	ENST00000445937		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000560440	ENST00000531443		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000560440	ENST00000517566		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000560440	ENST00000452423		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000560440	ENST00000442977		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000521963		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000312046		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000449762		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000297447		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000521592		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000497705		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000559427	ENST00000445937		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000559427	ENST00000531443		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000559427	ENST00000517566		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-5UTR	ENST00000559427	ENST00000452423		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-5UTR	ENST00000559427	ENST00000442977		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000521963		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000312046		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000449762		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000297447		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000521592		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000497705		ChiTaRS3.1			DA444134	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-3UTR	ENST00000254722	ENST00000307630		ChiTaRS3.1			BF701694	SERPINF1	chr17	1679893	+	YWHAG	chr7	75956971	-
intron-3UTR	ENST00000571870	ENST00000307630		ChiTaRS3.1			BF701694	SERPINF1	chr17	1679893	+	YWHAG	chr7	75956971	-
intron-3CDS	ENST00000419821	ENST00000499247		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000419821	ENST00000268957		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-intron	ENST00000419821	ENST00000509385		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000392533	ENST00000499247		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000392533	ENST00000268957		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-intron	ENST00000392533	ENST00000509385		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000537952	ENST00000499247		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000537952	ENST00000268957		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-intron	ENST00000537952	ENST00000509385		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000543709	ENST00000499247		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000543709	ENST00000268957		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-intron	ENST00000543709	ENST00000509385		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000536979	ENST00000499247		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-3CDS	ENST00000536979	ENST00000268957		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
intron-intron	ENST00000536979	ENST00000509385		ChiTaRS3.1			AA503079	TAOK3	chr12	118704526	-	TOB1	chr17	48940606	-
In-frame	ENST00000220531	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
In-frame	ENST00000220531	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000220531	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000220531	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000567740	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000567740	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-5UTR	ENST00000567740	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-intron	ENST00000567740	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000567461	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000567461	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-5UTR	ENST00000567461	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-intron	ENST00000567461	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000562384	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000562384	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-5UTR	ENST00000562384	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-intron	ENST00000562384	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
In-frame	ENST00000566753	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
In-frame	ENST00000566753	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000566753	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000566753	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000565216	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-3CDS	ENST00000565216	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-5UTR	ENST00000565216	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
intron-intron	ENST00000565216	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-3CDS	ENST00000568816	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-3CDS	ENST00000568816	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-5UTR	ENST00000568816	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-intron	ENST00000568816	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
In-frame	ENST00000565323	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
In-frame	ENST00000565323	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-5UTR	ENST00000565323	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-intron	ENST00000565323	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-3CDS	ENST00000565409	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-3CDS	ENST00000565409	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-5UTR	ENST00000565409	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-intron	ENST00000565409	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-3CDS	ENST00000564765	ENST00000442713		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-3CDS	ENST00000564765	ENST00000269445		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-5UTR	ENST00000564765	ENST00000584977		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5UTR-intron	ENST00000564765	ENST00000578396		ChiTaRS3.1			DA666107	BLOC1S6	chr15	45884474	+	DYM	chr18	46918015	-
5CDS-3UTR	ENST00000341942	ENST00000372134		ChiTaRS3.1			AI200703	LAMTOR4	chr7	99751502	-	GHITM	chr10	85912314	-
3UTR-3UTR	ENST00000441173	ENST00000372134		ChiTaRS3.1			AI200703	LAMTOR4	chr7	99751502	-	GHITM	chr10	85912314	-
3UTR-3UTR	ENST00000468582	ENST00000372134		ChiTaRS3.1			AI200703	LAMTOR4	chr7	99751502	-	GHITM	chr10	85912314	-
intron-intron	ENST00000225964	ENST00000374675		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000374677		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000463972		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000423043		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000418477		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000486338		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000416369		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000441854		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000477713		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000441953		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000431735		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000462670		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-3UTR	ENST00000225964	ENST00000383214		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-3UTR	ENST00000225964	ENST00000383213		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-3UTR	ENST00000225964	ENST00000486373		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000443773		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000456261		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
intron-intron	ENST00000225964	ENST00000487655		ChiTaRS3.1			BQ181268	COL1A1	chr17	48261680	+	SLC39A7	chr6	4404184	-
5UTR-5UTR	ENST00000382869	ENST00000494188		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382869	ENST00000409892		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382869	ENST00000409784		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382869	ENST00000398529		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382869	ENST00000409751		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382869	ENST00000260638		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382869	ENST00000356214		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000494188		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000409892		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000409784		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000398529		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000409751		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000260638		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382881	ENST00000356214		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000494188		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000409892		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000409784		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000398529		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000409751		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000260638		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382874	ENST00000356214		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000494188		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000409892		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000409784		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000398529		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000409751		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000260638		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
5UTR-5UTR	ENST00000382871	ENST00000356214		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000494188		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000409892		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000409784		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000398529		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000409751		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000260638		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000382883	ENST00000356214		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000494188		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000409892		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000409784		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000398529		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000409751		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000260638		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
intron-5UTR	ENST00000494061	ENST00000356214		ChiTaRS3.1			DA134735	ZMYM2	chr13	20534166	+	RAB1A	chr2	65331940	-
In-frame	ENST00000355680	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000355680	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000355680	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000355680	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000355680	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
In-frame	ENST00000397638	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397638	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397638	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397638	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397638	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-3CDS	ENST00000291705	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000291705	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000291705	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000291705	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000291705	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-3CDS	ENST00000458387	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000458387	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000458387	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000458387	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000458387	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-3CDS	ENST00000451211	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000451211	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000451211	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000451211	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000451211	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
In-frame	ENST00000397637	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397637	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397637	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397637	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000397637	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-3CDS	ENST00000334494	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000334494	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000334494	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000334494	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000334494	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-3CDS	ENST00000397628	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000397628	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000397628	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000397628	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000397628	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
In-frame	ENST00000440086	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000440086	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000440086	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000440086	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
5CDS-5UTR	ENST00000440086	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-3CDS	ENST00000491389	ENST00000229239		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000491389	ENST00000396856		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000491389	ENST00000396861		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000491389	ENST00000396859		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-5UTR	ENST00000491389	ENST00000396858		ChiTaRS3.1			BE255519	PRMT2	chr21	48081784	+	GAPDH	chr12	6645706	+
intron-intron	ENST00000310638	ENST00000435667		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000440156		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000455077		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000437179		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000388777		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000454389		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000446700		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000425128		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000445684		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000428386		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000310638	ENST00000295736		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000435667		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000440156		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000455077		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000437179		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000388777		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000454389		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000446700		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000425128		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000445684		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000428386		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371904	ENST00000295736		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000435667		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000440156		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000455077		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000437179		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000388777		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000454389		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000446700		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000425128		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000445684		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000428386		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000462347	ENST00000295736		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000435667		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000440156		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000455077		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000437179		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000388777		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000454389		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000446700		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000425128		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000445684		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000428386		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000371905	ENST00000295736		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000435667		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000440156		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000455077		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000437179		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000388777		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000454389		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000446700		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000425128		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000445684		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000428386		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000496519	ENST00000295736		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000435667		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000440156		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000455077		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000437179		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000388777		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000454389		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000446700		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000425128		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000445684		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000428386		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000457840	ENST00000295736		ChiTaRS3.1			W84867	CYP4A11	chr1	47395580	-	SLC4A7	chr3	27523259	-
intron-intron	ENST00000373912	ENST00000569256		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000373912	ENST00000248098		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000373912	ENST00000562684		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000373912	ENST00000561516		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373912	ENST00000382711		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373912	ENST00000569765		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373912	ENST00000382710		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373909	ENST00000569256		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000373909	ENST00000248098		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000373909	ENST00000562684		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000373909	ENST00000561516		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373909	ENST00000382711		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373909	ENST00000569765		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000373909	ENST00000382710		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000313433	ENST00000569256		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000313433	ENST00000248098		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000313433	ENST00000562684		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-3UTR	ENST00000313433	ENST00000561516		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000313433	ENST00000382711		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000313433	ENST00000569765		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
intron-intron	ENST00000313433	ENST00000382710		ChiTaRS3.1			AK296898	RPA2	chr1	28218454	-	HN1L	chr16	1749462	+
Frame-shit	ENST00000374550	ENST00000184266		ChiTaRS3.1			CB409379	RPL11	chr1	24022397	+	NDUFB4	chr3	120321083	+
5CDS-3UTR	ENST00000374550	ENST00000485064		ChiTaRS3.1			CB409379	RPL11	chr1	24022397	+	NDUFB4	chr3	120321083	+
5CDS-3UTR	ENST00000374550	ENST00000492739		ChiTaRS3.1			CB409379	RPL11	chr1	24022397	+	NDUFB4	chr3	120321083	+
3UTR-3CDS	ENST00000482370	ENST00000184266		ChiTaRS3.1			CB409379	RPL11	chr1	24022397	+	NDUFB4	chr3	120321083	+
3UTR-3UTR	ENST00000482370	ENST00000485064		ChiTaRS3.1			CB409379	RPL11	chr1	24022397	+	NDUFB4	chr3	120321083	+
3UTR-3UTR	ENST00000482370	ENST00000492739		ChiTaRS3.1			CB409379	RPL11	chr1	24022397	+	NDUFB4	chr3	120321083	+
intron-intron	ENST00000450466	ENST00000457408		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000450466	ENST00000289577		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-3UTR	ENST00000450466	ENST00000481238		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000450466	ENST00000444131		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000383233	ENST00000457408		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000383233	ENST00000289577		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-3UTR	ENST00000383233	ENST00000481238		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000383233	ENST00000444131		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000542162	ENST00000457408		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000542162	ENST00000289577		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-3UTR	ENST00000542162	ENST00000481238		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000542162	ENST00000444131		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000399707	ENST00000457408		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000399707	ENST00000289577		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-3UTR	ENST00000399707	ENST00000481238		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000399707	ENST00000444131		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000475185	ENST00000457408		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000475185	ENST00000289577		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-3UTR	ENST00000475185	ENST00000481238		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
intron-intron	ENST00000475185	ENST00000444131		ChiTaRS3.1			CA432178	TMEM241	chr18	20876351	+	TMED4	chr7	44620519	+
In-frame	ENST00000429029	ENST00000397293		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000429029	ENST00000424878		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
In-frame	ENST00000429029	ENST00000349314		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000429029	ENST00000361710		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000429029	ENST00000397287		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
5CDS-intron	ENST00000429029	ENST00000487423		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
In-frame	ENST00000262177	ENST00000397293		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000262177	ENST00000424878		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
In-frame	ENST00000262177	ENST00000349314		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000262177	ENST00000361710		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000262177	ENST00000397287		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
5CDS-intron	ENST00000262177	ENST00000487423		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
In-frame	ENST00000452797	ENST00000397293		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000452797	ENST00000424878		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
In-frame	ENST00000452797	ENST00000349314		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000452797	ENST00000361710		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
Frame-shit	ENST00000452797	ENST00000397287		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
5CDS-intron	ENST00000452797	ENST00000487423		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000443280	ENST00000397293		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000443280	ENST00000424878		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000443280	ENST00000349314		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000443280	ENST00000361710		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000443280	ENST00000397287		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-intron	ENST00000443280	ENST00000487423		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000494267	ENST00000397293		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000494267	ENST00000424878		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000494267	ENST00000349314		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000494267	ENST00000361710		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-3CDS	ENST00000494267	ENST00000397287		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
intron-intron	ENST00000494267	ENST00000487423		ChiTaRS3.1			AK297892	DNAJB6	chr7	157174975	+	APOL3	chr22	36537561	-
3UTR-3UTR	ENST00000371437	ENST00000356388		ChiTaRS3.1			CA311962	NDUFA1	chrX	119010556	-	SPRED2	chr2	65540124	+
3UTR-intron	ENST00000371437	ENST00000443619		ChiTaRS3.1			CA311962	NDUFA1	chrX	119010556	-	SPRED2	chr2	65540124	+
3UTR-intron	ENST00000371437	ENST00000474228		ChiTaRS3.1			CA311962	NDUFA1	chrX	119010556	-	SPRED2	chr2	65540124	+
intron-3UTR	ENST00000364849	ENST00000345317		ChiTaRS3.1			AV758206	SNHG6	chr8	67834730	-	SKAP2	chr7	26708291	-
intron-intron	ENST00000364849	ENST00000539623		ChiTaRS3.1			AV758206	SNHG6	chr8	67834730	-	SKAP2	chr7	26708291	-
intron-intron	ENST00000364849	ENST00000489977		ChiTaRS3.1			AV758206	SNHG6	chr8	67834730	-	SKAP2	chr7	26708291	-
3UTR-intron	ENST00000338051	ENST00000552491		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000338051	ENST00000547825		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000338051	ENST00000552823		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000338051	ENST00000394943		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000338051	ENST00000341247		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-5UTR	ENST00000338051	ENST00000552783		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000338051	ENST00000552909		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000338051	ENST00000552008		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000552491		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000547825		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000552823		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000394943		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000341247		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-5UTR	ENST00000394976	ENST00000552783		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000552909		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000394976	ENST00000552008		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000552491		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000547825		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000552823		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000394943		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000341247		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-5UTR	ENST00000504727	ENST00000552783		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000552909		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
3UTR-intron	ENST00000504727	ENST00000552008		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000552491		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000547825		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000552823		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000394943		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000341247		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-5UTR	ENST00000435259	ENST00000552783		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000552909		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000435259	ENST00000552008		ChiTaRS3.1			AK130086	C5orf24	chr5	134194027	+	LIMA1	chr12	50616430	-
intron-intron	ENST00000311713	ENST00000372097		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000311713	ENST00000372095		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000311713	ENST00000372099		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000311713	ENST00000372108		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000311713	ENST00000342018		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000311713	ENST00000485692		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000278856	ENST00000372097		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000278856	ENST00000372095		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000278856	ENST00000372099		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000278856	ENST00000372108		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000278856	ENST00000342018		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000278856	ENST00000485692		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000529106	ENST00000372097		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000529106	ENST00000372095		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000529106	ENST00000372099		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000529106	ENST00000372108		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000529106	ENST00000342018		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000529106	ENST00000485692		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525239	ENST00000372097		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525239	ENST00000372095		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525239	ENST00000372099		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525239	ENST00000372108		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525239	ENST00000342018		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525239	ENST00000485692		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525752	ENST00000372097		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525752	ENST00000372095		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525752	ENST00000372099		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525752	ENST00000372108		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525752	ENST00000342018		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000525752	ENST00000485692		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000540620	ENST00000372097		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000540620	ENST00000372095		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000540620	ENST00000372099		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000540620	ENST00000372108		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000540620	ENST00000342018		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000540620	ENST00000485692		ChiTaRS3.1			DA391448	WDR74	chr11	62609096	-	GTF3C5	chr9	135906060	+
intron-intron	ENST00000378204	ENST00000580436		ChiTaRS3.1			AK128498	EXT1	chr8	118920852	-	CLUL1	chr18	597674	+
intron-intron	ENST00000378204	ENST00000400606		ChiTaRS3.1			AK128498	EXT1	chr8	118920852	-	CLUL1	chr18	597674	+
intron-intron	ENST00000378204	ENST00000540035		ChiTaRS3.1			AK128498	EXT1	chr8	118920852	-	CLUL1	chr18	597674	+
intron-intron	ENST00000378204	ENST00000581619		ChiTaRS3.1			AK128498	EXT1	chr8	118920852	-	CLUL1	chr18	597674	+
intron-intron	ENST00000378204	ENST00000338387		ChiTaRS3.1			AK128498	EXT1	chr8	118920852	-	CLUL1	chr18	597674	+
intron-intron	ENST00000378204	ENST00000579494		ChiTaRS3.1			AK128498	EXT1	chr8	118920852	-	CLUL1	chr18	597674	+
5CDS-intron	ENST00000421182	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000421182	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000421182	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000357867	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000357867	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000357867	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000323926	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000323926	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000323926	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000336916	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000336916	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000336916	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000354785	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000354785	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000354785	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000357009	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000357009	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000357009	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000346544	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000346544	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000346544	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000345488	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000345488	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000345488	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000359671	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000359671	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000359671	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000446046	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000446046	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000446046	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000443816	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000443816	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000443816	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000432072	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000432072	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000432072	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000356005	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000356005	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000356005	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
intron-intron	ENST00000490833	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
intron-3UTR	ENST00000490833	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
intron-intron	ENST00000490833	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000426059	ENST00000477087		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-3UTR	ENST00000426059	ENST00000228872		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
5CDS-intron	ENST00000426059	ENST00000396340		ChiTaRS3.1			BG925834	FN1	chr2	216283967	-	CDKN1B	chr12	12874585	+
intron-3CDS	ENST00000380027	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380027	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000380027	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396855	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000396855	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000305836	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000305836	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000380034	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000380034	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396847	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000396847	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000483835	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000483835	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000311573		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000368340		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000347088		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000361831		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000355499		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000404643		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000407221		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000359205		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000295566		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000368330		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000368339		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000535662		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000405763		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-3CDS	ENST00000396853	ENST00000438245		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
intron-5UTR	ENST00000396853	ENST00000476093		ChiTaRS3.1			BI827877	TRIM5	chr11	5902477	-	YY1AP1	chr1	155642514	-
3UTR-3CDS	ENST00000394670	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394670	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394670	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394670	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394670	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-intron	ENST00000394670	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000321233	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000321233	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000321233	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000321233	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000321233	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-intron	ENST00000321233	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394673	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394673	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394673	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394673	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000394673	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-intron	ENST00000394673	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000341711	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000341711	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000341711	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000341711	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-3CDS	ENST00000341711	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
3UTR-intron	ENST00000341711	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000342555	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000342555	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000342555	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000342555	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000342555	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-intron	ENST00000342555	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000577908	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000577908	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000577908	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000577908	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000577908	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-intron	ENST00000577908	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000584416	ENST00000395762		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000584416	ENST00000543915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000584416	ENST00000449195		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000584416	ENST00000380922		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-3CDS	ENST00000584416	ENST00000170630		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
intron-intron	ENST00000584416	ENST00000565915		ChiTaRS3.1			CF125176	ZNF207	chr17	30697083	+	IL4R	chr16	27353445	+
Frame-shit	ENST00000224167	ENST00000223364		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
Frame-shit	ENST00000224167	ENST00000458240		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
5CDS-5UTR	ENST00000224167	ENST00000434895		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
Frame-shit	ENST00000371625	ENST00000223364		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
Frame-shit	ENST00000371625	ENST00000458240		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
5CDS-5UTR	ENST00000371625	ENST00000434895		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
intron-3CDS	ENST00000460340	ENST00000223364		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
intron-3CDS	ENST00000460340	ENST00000458240		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
intron-5UTR	ENST00000460340	ENST00000434895		ChiTaRS3.1			AJ711202	PTGDS	chr9	139872044	+	MYL7	chr7	44179968	-
5CDS-intron	ENST00000262960	ENST00000407690		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407431		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407148		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000405938		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000496523		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407690		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407431		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407148		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000405938		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000496523		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407690		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407431		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407148		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000405938		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000496523		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407690		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407431		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407148		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000405938		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000496523		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407690		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407431		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407148		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000405938		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000496523		ChiTaRS3.1			BF571101	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000229239	ENST00000540235		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393930		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393931		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000310706		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000540235		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393930		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393931		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000310706		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000540235		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393930		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393931		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000310706		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000540235		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393930		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393931		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000310706		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000540235		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393930		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393931		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000310706		ChiTaRS3.1			BQ314753	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
intron-3CDS	ENST00000378300	ENST00000407106		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000378300	ENST00000261755		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000378300	ENST00000561421		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-5UTR	ENST00000378300	ENST00000539156		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-intron	ENST00000378300	ENST00000558627		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000378292	ENST00000407106		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000378292	ENST00000261755		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000378292	ENST00000561421		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-5UTR	ENST00000378292	ENST00000539156		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-intron	ENST00000378292	ENST00000558627		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000329305	ENST00000407106		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000329305	ENST00000261755		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000329305	ENST00000561421		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-5UTR	ENST00000329305	ENST00000539156		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-intron	ENST00000329305	ENST00000558627		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000360958	ENST00000407106		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000360958	ENST00000261755		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-3CDS	ENST00000360958	ENST00000561421		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-5UTR	ENST00000360958	ENST00000539156		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-intron	ENST00000360958	ENST00000558627		ChiTaRS3.1			CN263730	TPM2	chr9	35682676	-	FAH	chr15	80450444	+
intron-intron	ENST00000331244	ENST00000520441		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
intron-3UTR	ENST00000331244	ENST00000523377		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
intron-5UTR	ENST00000331244	ENST00000517396		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
intron-intron	ENST00000331244	ENST00000520318		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-intron	ENST00000368644	ENST00000520441		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-3UTR	ENST00000368644	ENST00000523377		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-5UTR	ENST00000368644	ENST00000517396		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-intron	ENST00000368644	ENST00000520318		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-intron	ENST00000496195	ENST00000520441		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-3UTR	ENST00000496195	ENST00000523377		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-5UTR	ENST00000496195	ENST00000517396		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
3UTR-intron	ENST00000496195	ENST00000520318		ChiTaRS3.1			BU623284	GLRX3	chr10	131978471	-	LYRM2	chr6	90346566	+
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y16346	COL1A1	chr17	48266737	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y16346	COL1A1	chr17	48266737	-	PDGFB	chr22	39631879	-
intron-intron	ENST00000367321	ENST00000367321		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000367307		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000478643		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367321		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367307		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000478643		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367321		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367307		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000478643		ChiTaRS3.1			AA764935	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-3CDS	ENST00000309311	ENST00000398519		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-3CDS	ENST00000309311	ENST00000314028		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-3CDS	ENST00000309311	ENST00000392334		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-intron	ENST00000309311	ENST00000578904		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-3CDS	ENST00000600720	ENST00000398519		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-3CDS	ENST00000600720	ENST00000314028		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-3CDS	ENST00000600720	ENST00000392334		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-intron	ENST00000600720	ENST00000578904		ChiTaRS3.1			BC068002	EEF2	chr19	3979817	-	CSNK1D	chr17	80206799	-
intron-3UTR	ENST00000318602	ENST00000409257		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000318602	ENST00000589256		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000318602	ENST00000588800		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000318602	ENST00000591952		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-3UTR	ENST00000318602	ENST00000327898		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000318602	ENST00000586731		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000318602	ENST00000589664		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-3UTR	ENST00000542567	ENST00000409257		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000542567	ENST00000589256		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000542567	ENST00000588800		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000542567	ENST00000591952		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-3UTR	ENST00000542567	ENST00000327898		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000542567	ENST00000586731		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000542567	ENST00000589664		ChiTaRS3.1			W90454	A2M	chr12	9243915	-	AFMID	chr17	76203648	+
intron-intron	ENST00000397097	ENST00000553780		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000397097	ENST00000554866		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000397097	ENST00000329597		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000397097	ENST00000554276		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-intron	ENST00000343776	ENST00000553780		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000343776	ENST00000554866		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000343776	ENST00000329597		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000343776	ENST00000554276		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-intron	ENST00000608949	ENST00000553780		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000608949	ENST00000554866		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000608949	ENST00000329597		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000608949	ENST00000554276		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-intron	ENST00000465266	ENST00000553780		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000465266	ENST00000554866		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000465266	ENST00000329597		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3UTR	ENST00000465266	ENST00000554276		ChiTaRS3.1			AA889306	ZNF678	chr1	227839288	-	SERPINA5	chr14	95059336	-
intron-3CDS	ENST00000222139	ENST00000381346		ChiTaRS3.1			BM552700	EPOR	chr19	11491701	-	RDH11	chr14	68159703	-
intron-3CDS	ENST00000222139	ENST00000553384		ChiTaRS3.1			BM552700	EPOR	chr19	11491701	-	RDH11	chr14	68159703	-
intron-3CDS	ENST00000222139	ENST00000428130		ChiTaRS3.1			BM552700	EPOR	chr19	11491701	-	RDH11	chr14	68159703	-
intron-3CDS	ENST00000592375	ENST00000381346		ChiTaRS3.1			BM552700	EPOR	chr19	11491701	-	RDH11	chr14	68159703	-
intron-3CDS	ENST00000592375	ENST00000553384		ChiTaRS3.1			BM552700	EPOR	chr19	11491701	-	RDH11	chr14	68159703	-
intron-3CDS	ENST00000592375	ENST00000428130		ChiTaRS3.1			BM552700	EPOR	chr19	11491701	-	RDH11	chr14	68159703	-
3UTR-3CDS	ENST00000221855	ENST00000299502		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-3CDS	ENST00000221855	ENST00000457692		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-intron	ENST00000221855	ENST00000482254		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-3CDS	ENST00000392178	ENST00000299502		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-3CDS	ENST00000392178	ENST00000457692		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-intron	ENST00000392178	ENST00000482254		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-3CDS	ENST00000589996	ENST00000299502		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-3CDS	ENST00000589996	ENST00000457692		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-intron	ENST00000589996	ENST00000482254		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-3CDS	ENST00000585746	ENST00000299502		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-3CDS	ENST00000585746	ENST00000457692		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-intron	ENST00000585746	ENST00000482254		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-3CDS	ENST00000586868	ENST00000299502		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-3CDS	ENST00000586868	ENST00000457692		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
3UTR-intron	ENST00000586868	ENST00000482254		ChiTaRS3.1			CD522326	TBCB	chr19	36616722	+	SERPINB2	chr18	61558822	+
intron-intron	ENST00000572691	ENST00000551765		ChiTaRS3.1			CF144328	ZNF205-AS1	chr16	3162641	+	GATC	chr12	120899678	-
intron-intron	ENST00000576943	ENST00000551765		ChiTaRS3.1			CF144328	ZNF205-AS1	chr16	3162641	+	GATC	chr12	120899678	-
intron-3CDS	ENST00000264335	ENST00000394375		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000264335	ENST00000608620		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000264335	ENST00000238983		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000264335	ENST00000355843		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000571732	ENST00000394375		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000571732	ENST00000608620		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000571732	ENST00000238983		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000571732	ENST00000355843		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000573026	ENST00000394375		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000573026	ENST00000608620		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000573026	ENST00000238983		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000573026	ENST00000355843		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000575977	ENST00000394375		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000575977	ENST00000608620		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000575977	ENST00000238983		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000575977	ENST00000355843		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000498643	ENST00000394375		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000498643	ENST00000608620		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000498643	ENST00000238983		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-intron	ENST00000498643	ENST00000355843		ChiTaRS3.1			BP341542	YWHAE	chr17	1265202	-	LIPF	chr10	90424200	+
intron-3CDS	ENST00000532456	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000532456	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000532456	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000532456	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000532456	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000539648	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000539648	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000539648	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000539648	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000539648	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000528499	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000528499	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000528499	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000528499	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000528499	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3CDS	ENST00000263574	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3CDS	ENST00000263574	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000263574	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000263574	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000263574	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000345598	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000345598	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000345598	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000345598	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000345598	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000338167	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3CDS	ENST00000338167	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000338167	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000338167	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
intron-3UTR	ENST00000338167	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3CDS	ENST00000278756	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3CDS	ENST00000278756	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000278756	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000278756	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000278756	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3CDS	ENST00000543137	ENST00000426496		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3CDS	ENST00000543137	ENST00000392078		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000543137	ENST00000476522		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000543137	ENST00000367742		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000543137	ENST00000338920		ChiTaRS3.1			BM752864	APLP2	chr11	130014501	+	PRRC2C	chr1	171501915	+
3UTR-3UTR	ENST00000300952	ENST00000272217		ChiTaRS3.1			AI570555	MIDN	chr19	1258729	-	ARL8A	chr1	202103565	+
3UTR-intron	ENST00000300952	ENST00000486225		ChiTaRS3.1			AI570555	MIDN	chr19	1258729	-	ARL8A	chr1	202103565	+
3UTR-3UTR	ENST00000591446	ENST00000272217		ChiTaRS3.1			AI570555	MIDN	chr19	1258729	-	ARL8A	chr1	202103565	+
3UTR-intron	ENST00000591446	ENST00000486225		ChiTaRS3.1			AI570555	MIDN	chr19	1258729	-	ARL8A	chr1	202103565	+
intron-3CDS	ENST00000360663	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000360663	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000360663	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000394828	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000394828	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000394828	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000394829	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000394829	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000394829	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000342558	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000342558	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000342558	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000545874	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000545874	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000545874	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000394822	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000394822	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000394822	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000544628	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000544628	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000544628	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000495897	ENST00000234111		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000495897	ENST00000405333		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-5UTR	ENST00000495897	ENST00000446285		ChiTaRS3.1			BF081601	PPP3CB	chr10	75227357	-	ODC1	chr2	10584299	-
intron-3CDS	ENST00000343023	ENST00000463381		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000343023	ENST00000473312		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000343023	ENST00000479901		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000343023	ENST00000397238		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000343023	ENST00000476375		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000343023	ENST00000335367		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-3CDS	ENST00000354230	ENST00000463381		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000354230	ENST00000473312		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000354230	ENST00000479901		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000354230	ENST00000397238		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000354230	ENST00000476375		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000354230	ENST00000335367		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-3CDS	ENST00000303887	ENST00000463381		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000303887	ENST00000473312		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000303887	ENST00000479901		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000303887	ENST00000397238		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000303887	ENST00000476375		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
intron-intron	ENST00000303887	ENST00000335367		ChiTaRS3.1			AK131236	MCM7	chr7	99704137	+	AGAP3	chr7	150820875	+
In-frame	ENST00000549396	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549396	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549396	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549396	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000549396	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000549396	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000550584	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000550584	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000550584	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000550584	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000550584	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000550584	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549325	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549325	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549325	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000549325	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000549325	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000549325	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000545296	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000545296	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000545296	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000545296	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000545296	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000545296	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000550359	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000550359	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000550359	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000550359	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000550359	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000550359	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000407050	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000407050	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000407050	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000407050	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000407050	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000407050	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000333447	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000333447	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000333447	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000333447	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000333447	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000333447	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000548586	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000548586	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000548586	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000548586	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000548586	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000548586	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000443686	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000443686	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000443686	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000443686	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000443686	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000443686	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000552948	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000552948	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000552948	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
In-frame	ENST00000552948	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000552948	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
5CDS-intron	ENST00000552948	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541570	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541570	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541570	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541570	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000541570	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000541570	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541017	ENST00000356577		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541017	ENST00000290239		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541017	ENST00000381692		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000541017	ENST00000300278		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000541017	ENST00000381679		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-intron	ENST00000541017	ENST00000470533		ChiTaRS3.1			DA529554	PPFIA2	chr12	82147752	-	SON	chr21	34931534	+
intron-3CDS	ENST00000215832	ENST00000320580		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000215832	ENST00000529757		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000215832	ENST00000524815		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000398822	ENST00000320580		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000398822	ENST00000529757		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000398822	ENST00000524815		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000544786	ENST00000320580		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000544786	ENST00000529757		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000544786	ENST00000524815		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000491588	ENST00000320580		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000491588	ENST00000529757		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000491588	ENST00000524815		ChiTaRS3.1			AW500870	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
5CDS-intron	ENST00000367265	ENST00000445937		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000531443		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000517566		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000452423		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000442977		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000521963		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000312046		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000449762		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000297447		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-5UTR	ENST00000367265	ENST00000521592		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367265	ENST00000497705		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000445937		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000531443		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000517566		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000452423		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000442977		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000521963		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000312046		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000449762		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000297447		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-5UTR	ENST00000367264	ENST00000521592		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
5CDS-intron	ENST00000367264	ENST00000497705		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000445937		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000531443		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000517566		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000452423		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000442977		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000521963		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000312046		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000449762		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000297447		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-5UTR	ENST00000456180	ENST00000521592		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-intron	ENST00000456180	ENST00000497705		ChiTaRS3.1			BP208834	KDM5B	chr1	202777228	-	OXR1	chr8	107749747	+
intron-3CDS	ENST00000394456	ENST00000368704		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000394456	ENST00000368706		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000394456	ENST00000368703		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000394456	ENST00000368705		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-5UTR	ENST00000394456	ENST00000474991		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000429701	ENST00000368704		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000429701	ENST00000368706		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000429701	ENST00000368703		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-3CDS	ENST00000429701	ENST00000368705		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
intron-5UTR	ENST00000429701	ENST00000474991		ChiTaRS3.1			AW370288	GTF2F1	chr19	6380260	-	S100A16	chr1	153580089	-
3UTR-3CDS	ENST00000310137	ENST00000267842		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
3UTR-3CDS	ENST00000310137	ENST00000380902		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
3UTR-3CDS	ENST00000310137	ENST00000544960		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
3UTR-3CDS	ENST00000393979	ENST00000267842		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
3UTR-3CDS	ENST00000393979	ENST00000380902		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
3UTR-3CDS	ENST00000393979	ENST00000544960		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000409372	ENST00000267842		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000409372	ENST00000380902		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000409372	ENST00000544960		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000443702	ENST00000267842		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000443702	ENST00000380902		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000443702	ENST00000544960		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000409738	ENST00000267842		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000409738	ENST00000380902		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000409738	ENST00000544960		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000461478	ENST00000267842		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000461478	ENST00000380902		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
intron-3CDS	ENST00000461478	ENST00000544960		ChiTaRS3.1			AA888112	RBM14	chr11	66394744	-	SLC27A2	chr15	50526112	-
3UTR-3UTR	ENST00000354336	ENST00000370620		ChiTaRS3.1			AV727141	CRKL	chr22	21304742	+	ARHGEF6	chrX	135748568	-
3UTR-3UTR	ENST00000354336	ENST00000370622		ChiTaRS3.1			AV727141	CRKL	chr22	21304742	+	ARHGEF6	chrX	135748568	-
3UTR-3UTR	ENST00000354336	ENST00000250617		ChiTaRS3.1			AV727141	CRKL	chr22	21304742	+	ARHGEF6	chrX	135748568	-
3UTR-intron	ENST00000354336	ENST00000535227		ChiTaRS3.1			AV727141	CRKL	chr22	21304742	+	ARHGEF6	chrX	135748568	-
intron-3CDS	ENST00000390548	ENST00000410032		ChiTaRS3.1			CB958269	IGHG1	chr14	106725459	-	MLPH	chr2	238449564	+
intron-3CDS	ENST00000390548	ENST00000264605		ChiTaRS3.1			CB958269	IGHG1	chr14	106725459	-	MLPH	chr2	238449564	+
intron-3CDS	ENST00000390548	ENST00000445024		ChiTaRS3.1			CB958269	IGHG1	chr14	106725459	-	MLPH	chr2	238449564	+
intron-3UTR	ENST00000390548	ENST00000468178		ChiTaRS3.1			CB958269	IGHG1	chr14	106725459	-	MLPH	chr2	238449564	+
intron-3UTR	ENST00000390548	ENST00000338530		ChiTaRS3.1			CB958269	IGHG1	chr14	106725459	-	MLPH	chr2	238449564	+
intron-intron	ENST00000390548	ENST00000409373		ChiTaRS3.1			CB958269	IGHG1	chr14	106725459	-	MLPH	chr2	238449564	+
Frame-shit	ENST00000600714	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000600714	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000601257	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000601257	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000301096	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000301096	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000544146	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000544146	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000536937	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000536937	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000597597	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000597597	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000541777	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000541777	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000545872	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000545872	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000594682	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000594682	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000391789	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000391789	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000596930	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000596930	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000597161	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000597161	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000598536	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000598536	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000600457	ENST00000252482		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000600457	ENST00000413988		ChiTaRS3.1			BX283946	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000265239	ENST00000335221		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000265239	ENST00000321892		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000265239	ENST00000306378		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000265239	ENST00000424123		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-intron	ENST00000265239	ENST00000577770		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000455191	ENST00000335221		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000455191	ENST00000321892		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000455191	ENST00000306378		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000455191	ENST00000424123		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-intron	ENST00000455191	ENST00000577770		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000453254	ENST00000335221		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000453254	ENST00000321892		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000453254	ENST00000306378		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000453254	ENST00000424123		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-intron	ENST00000453254	ENST00000577770		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000480302	ENST00000335221		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000480302	ENST00000321892		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000480302	ENST00000306378		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000480302	ENST00000424123		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-intron	ENST00000480302	ENST00000577770		ChiTaRS3.1			DA779835	IQCG	chr3	197681003	+	BPTF	chr17	65914828	+
intron-3CDS	ENST00000238256	ENST00000395762		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000238256	ENST00000543915		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000238256	ENST00000449195		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000238256	ENST00000380922		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000238256	ENST00000170630		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-intron	ENST00000238256	ENST00000565915		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000493847	ENST00000395762		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000493847	ENST00000543915		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000493847	ENST00000449195		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000493847	ENST00000380922		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-3CDS	ENST00000493847	ENST00000170630		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-intron	ENST00000493847	ENST00000565915		ChiTaRS3.1			CD369843	FKBP15	chr9	116026342	-	IL4R	chr16	27363976	-
intron-intron	ENST00000476844	ENST00000485162		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000476844	ENST00000463408		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000476844	ENST00000470449		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000492590	ENST00000485162		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000492590	ENST00000463408		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000492590	ENST00000470449		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000466788	ENST00000485162		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000466788	ENST00000463408		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000466788	ENST00000470449		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000468189	ENST00000485162		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000468189	ENST00000463408		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000468189	ENST00000470449		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000341848	ENST00000485162		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000341848	ENST00000463408		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
intron-intron	ENST00000341848	ENST00000470449		ChiTaRS3.1			DA292821	FHIT	chr3	59881842	-	MYLK-AS1	chr3	123339383	-
5UTR-3UTR	ENST00000542413	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5UTR-3UTR	ENST00000542413	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5UTR-3UTR	ENST00000542413	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5UTR-intron	ENST00000542413	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-3UTR	ENST00000600978	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-3UTR	ENST00000600978	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-3UTR	ENST00000600978	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-intron	ENST00000600978	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000598168	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000598168	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000598168	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-intron	ENST00000598168	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-3UTR	ENST00000411902	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-3UTR	ENST00000411902	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-3UTR	ENST00000411902	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
intron-intron	ENST00000411902	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000253727	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000253727	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000253727	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-intron	ENST00000253727	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000599105	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000599105	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000599105	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-intron	ENST00000599105	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000593926	ENST00000394963		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000593926	ENST00000381513		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-3UTR	ENST00000593926	ENST00000548573		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
5CDS-intron	ENST00000593926	ENST00000549526		ChiTaRS3.1			BM719092	NR1H2	chr19	50881545	+	SMARCD1	chr12	50493826	+
In-frame	ENST00000332050	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332050	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332050	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332050	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332050	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000397938	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000397938	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000397938	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000397938	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000397938	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000406548	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000406548	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000406548	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000406548	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000406548	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000331029	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000331029	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000331029	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000331029	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000331029	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000414183	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000414183	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000414183	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000414183	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000414183	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000333395	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000333395	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000333395	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000333395	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000333395	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332035	ENST00000525560		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332035	ENST00000344954		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332035	ENST00000527786		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332035	ENST00000534087		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000332035	ENST00000281428		ChiTaRS3.1			AF327066	EWSR1	chr22	29683125	+	FLI1	chr11	128677075	+
In-frame	ENST00000534358	ENST00000496455		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000295920		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000534358	ENST00000476145		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
In-frame	ENST00000389506	ENST00000496455		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000295920		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
5CDS-intron	ENST00000389506	ENST00000476145		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-3CDS	ENST00000354520	ENST00000496455		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000354520	ENST00000295920		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000354520	ENST00000476145		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-3CDS	ENST00000420751	ENST00000496455		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000420751	ENST00000295920		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-intron	ENST00000420751	ENST00000476145		ChiTaRS3.1			AF297749	KMT2A	chr11	118355690	+	GMPS	chr3	155611305	+
intron-3CDS	ENST00000373314	ENST00000265343		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-3CDS	ENST00000373314	ENST00000378595		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-intron	ENST00000373314	ENST00000491831		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-3CDS	ENST00000373312	ENST00000265343		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-3CDS	ENST00000373312	ENST00000378595		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-intron	ENST00000373312	ENST00000491831		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-3CDS	ENST00000468379	ENST00000265343		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-3CDS	ENST00000468379	ENST00000378595		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-intron	ENST00000468379	ENST00000491831		ChiTaRS3.1			BG013858	FAM129B	chr9	130298564	-	AFF4	chr5	132228054	-
intron-3UTR	ENST00000242351	ENST00000368985		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-3UTR	ENST00000242351	ENST00000448301		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-intron	ENST00000242351	ENST00000480760		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-3UTR	ENST00000464606	ENST00000368985		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-3UTR	ENST00000464606	ENST00000448301		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-intron	ENST00000464606	ENST00000480760		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-3UTR	ENST00000471652	ENST00000368985		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-3UTR	ENST00000471652	ENST00000448301		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
intron-intron	ENST00000471652	ENST00000480760		ChiTaRS3.1			CA309494	ZC3HAV1	chr7	138745312	+	CTSS	chr1	150705390	+
5CDS-intron	ENST00000371018	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371018	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355977	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355977	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000357692	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000357692	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401041	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401041	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371016	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371016	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371014	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000371014	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000371012	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000371012	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401042	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000401042	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355356	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
5CDS-intron	ENST00000355356	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000479067	ENST00000370982		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-intron	ENST00000479067	ENST00000494936		ChiTaRS3.1			AK074990	MIER1	chr1	67428843	+	GNG12	chr1	68659912	-
intron-3UTR	ENST00000595125	ENST00000358136		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000595125	ENST00000356315		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000595125	ENST00000496628		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000595125	ENST00000543766		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000595125	ENST00000471923		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-intron	ENST00000595125	ENST00000543710		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
3UTR-3UTR	ENST00000423777	ENST00000358136		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
3UTR-3UTR	ENST00000423777	ENST00000356315		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
3UTR-3UTR	ENST00000423777	ENST00000496628		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
3UTR-3UTR	ENST00000423777	ENST00000543766		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
3UTR-3UTR	ENST00000423777	ENST00000471923		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
3UTR-intron	ENST00000423777	ENST00000543710		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000600336	ENST00000358136		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000600336	ENST00000356315		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000600336	ENST00000496628		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000600336	ENST00000543766		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000600336	ENST00000471923		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-intron	ENST00000600336	ENST00000543710		ChiTaRS3.1			AI857456	ATF5	chr19	50437112	-	VPS13D	chr1	12570183	-
intron-3UTR	ENST00000367066	ENST00000359979		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000367066	ENST00000372088		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000367066	ENST00000224756		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000367066	ENST00000494144		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000367066	ENST00000543283		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-3UTR	ENST00000326965	ENST00000359979		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000326965	ENST00000372088		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000326965	ENST00000224756		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000326965	ENST00000494144		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000326965	ENST00000543283		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-3UTR	ENST00000338313	ENST00000359979		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000338313	ENST00000372088		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000338313	ENST00000224756		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000338313	ENST00000494144		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-intron	ENST00000338313	ENST00000543283		ChiTaRS3.1			AK298686	TAGAP	chr6	159457064	-	CCSER2	chr10	86133674	+
intron-3UTR	ENST00000409236	ENST00000264012		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000409236	ENST00000429102		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000409236	ENST00000581171		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-intron	ENST00000409236	ENST00000569117		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000356421	ENST00000264012		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000356421	ENST00000429102		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000356421	ENST00000581171		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-intron	ENST00000356421	ENST00000569117		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000317233	ENST00000264012		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000317233	ENST00000429102		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000317233	ENST00000581171		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-intron	ENST00000317233	ENST00000569117		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000409579	ENST00000264012		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000409579	ENST00000429102		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000409579	ENST00000581171		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-intron	ENST00000409579	ENST00000569117		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000483600	ENST00000264012		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000483600	ENST00000429102		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3UTR	ENST00000483600	ENST00000581171		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-intron	ENST00000483600	ENST00000569117		ChiTaRS3.1			AA425556	AFF3	chr2	100623665	-	CDH3	chr16	68732430	+
intron-3CDS	ENST00000485760	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000485760	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000485760	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000485760	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000485760	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371236	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371236	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371236	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371236	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371236	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371234	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371234	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371234	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371234	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371234	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000420954	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000420954	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000420954	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000420954	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000420954	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000439789	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000439789	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000439789	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000439789	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000439789	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000414851	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000414851	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000414851	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000414851	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000414851	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371231	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371231	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371231	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371231	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371231	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371230	ENST00000395938		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371230	ENST00000312280		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371230	ENST00000494511		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371230	ENST00000395936		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
intron-3CDS	ENST00000371230	ENST00000426385		ChiTaRS3.1			BM720166	DAB1	chr1	58853266	-	PMP22	chr17	15142860	-
3UTR-3CDS	ENST00000491306	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-3CDS	ENST00000491306	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
3UTR-intron	ENST00000491306	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000600880	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-intron	ENST00000600880	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000446558	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-intron	ENST00000446558	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000456586	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
5CDS-intron	ENST00000456586	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000598925	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-intron	ENST00000598925	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000427280	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-intron	ENST00000427280	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000550697		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000548580		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000293422		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000348108		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000549017		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000549566		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000536128		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000547649		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000547408		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000551589		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000548400		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-3CDS	ENST00000441179	ENST00000548293		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
intron-intron	ENST00000441179	ENST00000551954		ChiTaRS3.1			BU954401	RPL37A	chr2	217366187	+	MYL6	chr12	56553913	+
Frame-shit	ENST00000348367	ENST00000321728		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
5CDS-3UTR	ENST00000348367	ENST00000303531		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
5CDS-intron	ENST00000348367	ENST00000482000		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
5CDS-intron	ENST00000348367	ENST00000498058		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
Frame-shit	ENST00000423155	ENST00000321728		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
5CDS-3UTR	ENST00000423155	ENST00000303531		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
5CDS-intron	ENST00000423155	ENST00000482000		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
5CDS-intron	ENST00000423155	ENST00000498058		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-3CDS	ENST00000369425	ENST00000321728		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-3UTR	ENST00000369425	ENST00000303531		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-intron	ENST00000369425	ENST00000482000		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-intron	ENST00000369425	ENST00000498058		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-3CDS	ENST00000480130	ENST00000321728		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-3UTR	ENST00000480130	ENST00000303531		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-intron	ENST00000480130	ENST00000482000		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-intron	ENST00000480130	ENST00000498058		ChiTaRS3.1			BM710854	GPAM	chr10	113915622	-	PRKCB	chr16	24231281	+
intron-5UTR	ENST00000382722	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000382722	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000587995	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000587995	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000588077	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000588077	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000586184	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000586184	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000585708	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000585708	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000585732	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000585732	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000539048	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000539048	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000538450	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000538450	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-5UTR	ENST00000538027	ENST00000361427		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-intron	ENST00000538027	ENST00000493418		ChiTaRS3.1			BC075848	CACNA2D4	chr12	2027712	+	HMGN2	chr1	26799035	+
intron-3UTR	ENST00000377559	ENST00000225394		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000377559	ENST00000394869		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000377559	ENST00000581348		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-intron	ENST00000377559	ENST00000579937		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000265459	ENST00000225394		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000265459	ENST00000394869		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000265459	ENST00000581348		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-intron	ENST00000265459	ENST00000579937		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000301894	ENST00000225394		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000301894	ENST00000394869		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000301894	ENST00000581348		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-intron	ENST00000301894	ENST00000579937		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000377551	ENST00000225394		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000377551	ENST00000394869		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000377551	ENST00000581348		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-intron	ENST00000377551	ENST00000579937		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000409571	ENST00000225394		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000409571	ENST00000394869		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000409571	ENST00000581348		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-intron	ENST00000409571	ENST00000579937		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000496291	ENST00000225394		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000496291	ENST00000394869		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-3UTR	ENST00000496291	ENST00000581348		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
intron-intron	ENST00000496291	ENST00000579937		ChiTaRS3.1			BF932395	NRXN2	chr11	64422578	+	GIT1	chr17	27901397	-
5CDS-intron	ENST00000415083	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000415083	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000542420	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000542420	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000542743	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000542743	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000539849	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000539849	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000269137	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000269137	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000545952	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
5CDS-intron	ENST00000545952	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
intron-intron	ENST00000585241	ENST00000396928		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
intron-intron	ENST00000585241	ENST00000376884		ChiTaRS3.1			AF114234	SS18	chr18	23612363	-	SSX4B	chrX	48265523	-
intron-3CDS	ENST00000450793	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000450793	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000538141	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000538141	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000380180	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000380180	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000318007	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000318007	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000437932	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000437932	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000317968	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000317968	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000542407	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000542407	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000508216	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000508216	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000514743	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000514743	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000380176	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000380176	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000359265	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000359265	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000512274	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000512274	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000504489	ENST00000376395		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000504489	ENST00000257468		ChiTaRS3.1			BF772752	PDLIM5	chr4	95524791	-	UBQLN1	chr9	86294756	-
intron-3CDS	ENST00000370331	ENST00000367669		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000370331	ENST00000308769		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000540033	ENST00000367669		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000540033	ENST00000308769		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000543509	ENST00000367669		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000543509	ENST00000308769		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000491940	ENST00000367669		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
intron-3CDS	ENST00000491940	ENST00000308769		ChiTaRS3.1			AK025789	EVI5	chr1	92975276	-	RFWD2	chr1	176132031	-
In-frame	ENST00000602836	ENST00000267229		ChiTaRS3.1			N86990	BIVM-ERCC5	chr13	103518629	+	RBM26	chr13	79940278	-
In-frame	ENST00000602836	ENST00000438737		ChiTaRS3.1			N86990	BIVM-ERCC5	chr13	103518629	+	RBM26	chr13	79940278	-
In-frame	ENST00000602836	ENST00000438724		ChiTaRS3.1			N86990	BIVM-ERCC5	chr13	103518629	+	RBM26	chr13	79940278	-
5CDS-5UTR	ENST00000602836	ENST00000461008		ChiTaRS3.1			N86990	BIVM-ERCC5	chr13	103518629	+	RBM26	chr13	79940278	-
Frame-shit	ENST00000156471	ENST00000281828		ChiTaRS3.1			DB256784	AQR	chr15	35240464	-	FARSB	chr2	223499262	-
Frame-shit	ENST00000156471	ENST00000536361		ChiTaRS3.1			DB256784	AQR	chr15	35240464	-	FARSB	chr2	223499262	-
5CDS-intron	ENST00000262133	ENST00000326877		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000262133	ENST00000539056		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000262133	ENST00000382224		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000262133	ENST00000382226		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000262133	ENST00000512376		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
3UTR-intron	ENST00000379935	ENST00000326877		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
3UTR-intron	ENST00000379935	ENST00000539056		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
3UTR-intron	ENST00000379935	ENST00000382224		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
3UTR-intron	ENST00000379935	ENST00000382226		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
3UTR-intron	ENST00000379935	ENST00000512376		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000544545	ENST00000326877		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000544545	ENST00000539056		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000544545	ENST00000382224		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000544545	ENST00000382226		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
5CDS-intron	ENST00000544545	ENST00000512376		ChiTaRS3.1			CB149026	RBL2	chr16	53493412	+	LCORL	chr4	17894370	-
In-frame	ENST00000302182	ENST00000358026		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000302182	ENST00000344626		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000302182	ENST00000429416		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000302182	ENST00000541122		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000302182	ENST00000589677		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000302182	ENST00000444061		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000302182	ENST00000590574		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
Frame-shit	ENST00000302182	ENST00000413806		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
Frame-shit	ENST00000302182	ENST00000450717		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
5CDS-intron	ENST00000302182	ENST00000538456		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000358026		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000344626		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000429416		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000541122		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000589677		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000444061		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000590574		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000413806		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000535788	ENST00000450717		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-intron	ENST00000535788	ENST00000538456		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000358026		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000344626		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000429416		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000541122		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000589677		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000444061		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000590574		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000413806		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000578649	ENST00000450717		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-intron	ENST00000578649	ENST00000538456		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000358026		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000344626		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000429416		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000541122		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000589677		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000444061		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395839	ENST00000590574		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
Frame-shit	ENST00000395839	ENST00000413806		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
Frame-shit	ENST00000395839	ENST00000450717		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
5CDS-intron	ENST00000395839	ENST00000538456		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000358026		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000344626		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000429416		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000541122		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000589677		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000444061		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
In-frame	ENST00000395837	ENST00000590574		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
Frame-shit	ENST00000395837	ENST00000413806		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
Frame-shit	ENST00000395837	ENST00000450717		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
5CDS-intron	ENST00000395837	ENST00000538456		ChiTaRS3.1			DB041801	UBB	chr17	16285496	+	SMARCA4	chr19	11095008	+
intron-3CDS	ENST00000266604	ENST00000278174		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-3CDS	ENST00000266604	ENST00000530907		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-5UTR	ENST00000266604	ENST00000528120		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-5UTR	ENST00000266604	ENST00000532261		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-3CDS	ENST00000446587	ENST00000278174		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-3CDS	ENST00000446587	ENST00000530907		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-5UTR	ENST00000446587	ENST00000528120		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-5UTR	ENST00000446587	ENST00000532261		ChiTaRS3.1			BP320300	LLPH	chr12	66539621	-	BTBD10	chr11	13443386	-
intron-5UTR	ENST00000357460	ENST00000313833		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-3UTR	ENST00000357460	ENST00000555087		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-5UTR	ENST00000357460	ENST00000440021		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
5UTR-5UTR	ENST00000561013	ENST00000313833		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
5UTR-3UTR	ENST00000561013	ENST00000555087		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
5UTR-5UTR	ENST00000561013	ENST00000440021		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-5UTR	ENST00000431326	ENST00000313833		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-3UTR	ENST00000431326	ENST00000555087		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-5UTR	ENST00000431326	ENST00000440021		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-5UTR	ENST00000558278	ENST00000313833		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-3UTR	ENST00000558278	ENST00000555087		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-5UTR	ENST00000558278	ENST00000440021		ChiTaRS3.1			DA330803	HOMEZ	chr14	23768609	-	FBXO34	chr14	55817097	+
intron-intron	ENST00000327428	ENST00000261497		ChiTaRS3.1			AW135461	BOLA3	chr2	74372375	+	USP22	chr17	20911577	+
intron-intron	ENST00000327428	ENST00000537526		ChiTaRS3.1			AW135461	BOLA3	chr2	74372375	+	USP22	chr17	20911577	+
intron-intron	ENST00000327428	ENST00000455117		ChiTaRS3.1			AW135461	BOLA3	chr2	74372375	+	USP22	chr17	20911577	+
intron-intron	ENST00000295326	ENST00000261497		ChiTaRS3.1			AW135461	BOLA3	chr2	74372375	+	USP22	chr17	20911577	+
intron-intron	ENST00000295326	ENST00000537526		ChiTaRS3.1			AW135461	BOLA3	chr2	74372375	+	USP22	chr17	20911577	+
intron-intron	ENST00000295326	ENST00000455117		ChiTaRS3.1			AW135461	BOLA3	chr2	74372375	+	USP22	chr17	20911577	+
intron-3CDS	ENST00000353170	ENST00000367976		ChiTaRS3.1			CN482962	KLHDC4	chr16	87760459	-	CTGF	chr6	132272292	-
intron-3CDS	ENST00000347925	ENST00000367976		ChiTaRS3.1			CN482962	KLHDC4	chr16	87760459	-	CTGF	chr6	132272292	-
intron-3CDS	ENST00000566349	ENST00000367976		ChiTaRS3.1			CN482962	KLHDC4	chr16	87760459	-	CTGF	chr6	132272292	-
intron-3CDS	ENST00000270583	ENST00000367976		ChiTaRS3.1			CN482962	KLHDC4	chr16	87760459	-	CTGF	chr6	132272292	-
intron-3CDS	ENST00000441964	ENST00000315585		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000441964	ENST00000266880		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000441964	ENST00000443047		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000441964	ENST00000450056		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-intron	ENST00000441964	ENST00000537522		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-5UTR	ENST00000441964	ENST00000541837		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-5UTR	ENST00000441964	ENST00000432561		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-intron	ENST00000441964	ENST00000541341		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000344697	ENST00000315585		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000344697	ENST00000266880		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000344697	ENST00000443047		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-3CDS	ENST00000344697	ENST00000450056		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-intron	ENST00000344697	ENST00000537522		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-5UTR	ENST00000344697	ENST00000541837		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-5UTR	ENST00000344697	ENST00000432561		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
intron-intron	ENST00000344697	ENST00000541341		ChiTaRS3.1			AA368045	POMGNT2	chr3	43120988	-	CHFR	chr12	133454227	-
5CDS-3UTR	ENST00000377532	ENST00000025301		ChiTaRS3.1			AK307760	PER3	chr1	7897210	+	AKAP11	chr13	42897343	+
5CDS-3UTR	ENST00000361923	ENST00000025301		ChiTaRS3.1			AK307760	PER3	chr1	7897210	+	AKAP11	chr13	42897343	+
intron-3UTR	ENST00000377541	ENST00000025301		ChiTaRS3.1			AK307760	PER3	chr1	7897210	+	AKAP11	chr13	42897343	+
Frame-shit	ENST00000302550	ENST00000508802		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
Frame-shit	ENST00000302550	ENST00000261439		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
5CDS-intron	ENST00000302550	ENST00000402522		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
5CDS-intron	ENST00000302550	ENST00000407365		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
Frame-shit	ENST00000263831	ENST00000508802		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
Frame-shit	ENST00000263831	ENST00000261439		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
5CDS-intron	ENST00000263831	ENST00000402522		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
5CDS-intron	ENST00000263831	ENST00000407365		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
3UTR-3CDS	ENST00000484738	ENST00000508802		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
3UTR-3CDS	ENST00000484738	ENST00000261439		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
3UTR-intron	ENST00000484738	ENST00000402522		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
3UTR-intron	ENST00000484738	ENST00000407365		ChiTaRS3.1			DA672747	DESI2	chr1	244816657	+	TBC1D1	chr4	38091552	+
Frame-shit	ENST00000218089	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000218089	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
intron-3CDS	ENST00000469481	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
intron-3CDS	ENST00000469481	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000354548	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000354548	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371160	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371160	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371157	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371157	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371145	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371145	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371144	ENST00000369144		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
Frame-shit	ENST00000371144	ENST00000541549		ChiTaRS3.1			AW501580	STAG2	chrX	123205097	+	EIF3A	chr10	120829131	-
3UTR-3CDS	ENST00000554438	ENST00000556994		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
3UTR-3CDS	ENST00000554438	ENST00000546080		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
3UTR-3CDS	ENST00000554438	ENST00000216774		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
3UTR-3CDS	ENST00000554438	ENST00000555557		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
3UTR-intron	ENST00000554438	ENST00000555535		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000245448	ENST00000556994		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000245448	ENST00000546080		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000245448	ENST00000216774		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000245448	ENST00000555557		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
5CDS-intron	ENST00000245448	ENST00000555535		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
Frame-shit	ENST00000426751	ENST00000556994		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
Frame-shit	ENST00000426751	ENST00000546080		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
Frame-shit	ENST00000426751	ENST00000216774		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
Frame-shit	ENST00000426751	ENST00000555557		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
5CDS-intron	ENST00000426751	ENST00000555535		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000311459	ENST00000556994		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000311459	ENST00000546080		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000311459	ENST00000216774		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000311459	ENST00000555557		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
5CDS-intron	ENST00000311459	ENST00000555535		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000358473	ENST00000556994		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000358473	ENST00000546080		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000358473	ENST00000216774		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
In-frame	ENST00000358473	ENST00000555557		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
5CDS-intron	ENST00000358473	ENST00000555535		ChiTaRS3.1			BI962829	ATP5S	chr14	50789439	+	SRP54	chr14	35497293	+
3UTR-3CDS	ENST00000216602	ENST00000337907		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-3CDS	ENST00000216602	ENST00000377464		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000400907		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000400908		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000476556		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000460659		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-3CDS	ENST00000311141	ENST00000337907		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-3CDS	ENST00000311141	ENST00000377464		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000400907		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000400908		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000476556		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000460659		ChiTaRS3.1			AI802312	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
intron-3UTR	ENST00000355272	ENST00000398576		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000355272	ENST00000323076		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000355272	ENST00000435666		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-intron	ENST00000355272	ENST00000460190		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000356926	ENST00000398576		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000356926	ENST00000323076		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000356926	ENST00000435666		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-intron	ENST00000356926	ENST00000460190		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000350812	ENST00000398576		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000350812	ENST00000323076		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000350812	ENST00000435666		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-intron	ENST00000350812	ENST00000460190		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000345016	ENST00000398576		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000345016	ENST00000323076		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000345016	ENST00000435666		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-intron	ENST00000345016	ENST00000460190		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000590683	ENST00000398576		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000590683	ENST00000323076		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000590683	ENST00000435666		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-intron	ENST00000590683	ENST00000460190		ChiTaRS3.1			BF895962	AP3D1	chr19	2109889	-	LCP1	chr13	46701286	-
intron-3UTR	ENST00000466764	ENST00000472647		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
intron-3UTR	ENST00000466764	ENST00000367811		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
intron-intron	ENST00000466764	ENST00000469474		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-3UTR	ENST00000376759	ENST00000472647		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-3UTR	ENST00000376759	ENST00000367811		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-intron	ENST00000376759	ENST00000469474		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-3UTR	ENST00000430348	ENST00000472647		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-3UTR	ENST00000430348	ENST00000367811		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-intron	ENST00000430348	ENST00000469474		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
intron-3UTR	ENST00000376755	ENST00000472647		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
intron-3UTR	ENST00000376755	ENST00000367811		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
intron-intron	ENST00000376755	ENST00000469474		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-3UTR	ENST00000354480	ENST00000472647		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-3UTR	ENST00000354480	ENST00000367811		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
3UTR-intron	ENST00000354480	ENST00000469474		ChiTaRS3.1			CA433037	RBM3	chrX	48436476	-	NME7	chr1	169102012	+
intron-intron	ENST00000464611	ENST00000368378		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000464611	ENST00000541576		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000464611	ENST00000457183		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000464611	ENST00000541990		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-5UTR	ENST00000464611	ENST00000486260		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000331789	ENST00000368378		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000331789	ENST00000541576		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000331789	ENST00000457183		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-intron	ENST00000331789	ENST00000541990		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-5UTR	ENST00000331789	ENST00000486260		ChiTaRS3.1			BP286903	ACTB	chr7	5568898	-	THBS3	chr1	155178773	-
intron-3CDS	ENST00000396981	ENST00000261776		ChiTaRS3.1			BP265165	UBE2G1	chr17	4174845	-	VAC14	chr16	70818057	-
intron-intron	ENST00000396981	ENST00000571759		ChiTaRS3.1			BP265165	UBE2G1	chr17	4174845	-	VAC14	chr16	70818057	-
intron-intron	ENST00000396981	ENST00000536184		ChiTaRS3.1			BP265165	UBE2G1	chr17	4174845	-	VAC14	chr16	70818057	-
intron-3CDS	ENST00000572484	ENST00000261776		ChiTaRS3.1			BP265165	UBE2G1	chr17	4174845	-	VAC14	chr16	70818057	-
intron-intron	ENST00000572484	ENST00000571759		ChiTaRS3.1			BP265165	UBE2G1	chr17	4174845	-	VAC14	chr16	70818057	-
intron-intron	ENST00000572484	ENST00000536184		ChiTaRS3.1			BP265165	UBE2G1	chr17	4174845	-	VAC14	chr16	70818057	-
intron-5UTR	ENST00000244769	ENST00000333762		ChiTaRS3.1			BI906151	ATXN1	chr6	16492183	+	H1FX	chr3	129035017	-
intron-5UTR	ENST00000436367	ENST00000333762		ChiTaRS3.1			BI906151	ATXN1	chr6	16492183	+	H1FX	chr3	129035017	-
intron-5UTR	ENST00000467008	ENST00000333762		ChiTaRS3.1			BI906151	ATXN1	chr6	16492183	+	H1FX	chr3	129035017	-
intron-3CDS	ENST00000396402	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000396402	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000396402	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000260433	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000260433	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000260433	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000396404	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000396404	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000396404	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000559878	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000559878	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000559878	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000405913	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000405913	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000405913	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000557858	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000557858	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000557858	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000492852	ENST00000354618		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-3CDS	ENST00000492852	ENST00000469141		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
intron-intron	ENST00000492852	ENST00000466743		ChiTaRS3.1			R27767	CYP19A1	chr15	51501771	+	THRAP3	chr1	36752666	-
3UTR-3UTR	ENST00000566157	ENST00000474629		ChiTaRS3.1			CD368875	OGFOD1	chr16	56511042	-	PARP14	chr3	122448055	-
3UTR-intron	ENST00000566157	ENST00000475640		ChiTaRS3.1			CD368875	OGFOD1	chr16	56511042	-	PARP14	chr3	122448055	-
intron-3UTR	ENST00000568397	ENST00000474629		ChiTaRS3.1			CD368875	OGFOD1	chr16	56511042	-	PARP14	chr3	122448055	-
intron-intron	ENST00000568397	ENST00000475640		ChiTaRS3.1			CD368875	OGFOD1	chr16	56511042	-	PARP14	chr3	122448055	-
intron-3UTR	ENST00000565209	ENST00000474629		ChiTaRS3.1			CD368875	OGFOD1	chr16	56511042	-	PARP14	chr3	122448055	-
intron-intron	ENST00000565209	ENST00000475640		ChiTaRS3.1			CD368875	OGFOD1	chr16	56511042	-	PARP14	chr3	122448055	-
intron-3CDS	ENST00000310127	ENST00000487519		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000310127	ENST00000373899		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000310127	ENST00000373895		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3CDS	ENST00000539485	ENST00000487519		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000539485	ENST00000373899		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000539485	ENST00000373895		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3CDS	ENST00000525591	ENST00000487519		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000525591	ENST00000373899		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000525591	ENST00000373895		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3CDS	ENST00000526092	ENST00000487519		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000526092	ENST00000373899		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
intron-3UTR	ENST00000526092	ENST00000373895		ChiTaRS3.1			AL048975	ATP8B3	chr19	1782569	-	TFAM	chr10	60145312	+
5CDS-3UTR	ENST00000225992	ENST00000299213		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
5CDS-intron	ENST00000225992	ENST00000560052		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
5CDS-intron	ENST00000225992	ENST00000344870		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
5CDS-3UTR	ENST00000591228	ENST00000299213		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
5CDS-intron	ENST00000591228	ENST00000560052		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
5CDS-intron	ENST00000591228	ENST00000344870		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
intron-3UTR	ENST00000587006	ENST00000299213		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
intron-intron	ENST00000587006	ENST00000560052		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
intron-intron	ENST00000587006	ENST00000344870		ChiTaRS3.1			BP396278	PPY	chr17	42018174	-	LARP6	chr15	71124218	-
5CDS-intron	ENST00000372484	ENST00000409527		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372484	ENST00000321878		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372484	ENST00000026218		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372484	ENST00000470411		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372484	ENST00000544860		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000354880	ENST00000409527		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000354880	ENST00000321878		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000354880	ENST00000026218		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000354880	ENST00000470411		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000354880	ENST00000544860		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000191018	ENST00000409527		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000191018	ENST00000321878		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000191018	ENST00000026218		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000191018	ENST00000470411		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000191018	ENST00000544860		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372459	ENST00000409527		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372459	ENST00000321878		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372459	ENST00000026218		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372459	ENST00000470411		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372459	ENST00000544860		ChiTaRS3.1			BM842710	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
intron-3CDS	ENST00000563392	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000563392	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000563392	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000570055	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000570055	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000570055	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000563206	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000563206	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000563206	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000451014	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000451014	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000451014	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000568625	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000568625	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3UTR	ENST00000568625	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000288071	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000288071	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5CDS-3UTR	ENST00000288071	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5UTR-3CDS	ENST00000393657	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5UTR-3CDS	ENST00000393657	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5UTR-3UTR	ENST00000393657	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000355992	ENST00000348943		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
Frame-shit	ENST00000355992	ENST00000325495		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
5CDS-3UTR	ENST00000355992	ENST00000602219		ChiTaRS3.1			BC054874	DDX19B	chr16	70333210	+	HNRNPM	chr19	8553693	+
intron-3CDS	ENST00000300584	ENST00000371399		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000072644		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000539954		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000300584	ENST00000469457		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000371399		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000072644		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000539954		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000409931	ENST00000469457		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000371399		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000072644		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000539954		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000492078	ENST00000469457		ChiTaRS3.1			BM047840	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
Frame-shit	ENST00000189978	ENST00000261396		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
Frame-shit	ENST00000189978	ENST00000537506		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
5CDS-intron	ENST00000189978	ENST00000366678		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
5CDS-intron	ENST00000189978	ENST00000485119		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
Frame-shit	ENST00000374448	ENST00000261396		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
Frame-shit	ENST00000374448	ENST00000537506		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
5CDS-intron	ENST00000374448	ENST00000366678		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
5CDS-intron	ENST00000374448	ENST00000485119		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
Frame-shit	ENST00000416899	ENST00000261396		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
Frame-shit	ENST00000416899	ENST00000537506		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
5CDS-intron	ENST00000416899	ENST00000366678		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
5CDS-intron	ENST00000416899	ENST00000485119		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-3CDS	ENST00000374440	ENST00000261396		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-3CDS	ENST00000374440	ENST00000537506		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000374440	ENST00000366678		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000374440	ENST00000485119		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-3CDS	ENST00000374439	ENST00000261396		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-3CDS	ENST00000374439	ENST00000537506		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000374439	ENST00000366678		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000374439	ENST00000485119		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-3CDS	ENST00000374438	ENST00000261396		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-3CDS	ENST00000374438	ENST00000537506		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000374438	ENST00000366678		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000374438	ENST00000485119		ChiTaRS3.1			DA418651	MUSK	chr9	113530363	+	NUP133	chr1	229631796	-
intron-intron	ENST00000342160	ENST00000396592		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000342160	ENST00000422365		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000342160	ENST00000492775		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000342160	ENST00000469823		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000342160	ENST00000313616		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000342160	ENST00000541540		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000262854	ENST00000396592		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000262854	ENST00000422365		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000262854	ENST00000492775		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000262854	ENST00000469823		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000262854	ENST00000313616		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000262854	ENST00000541540		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000474288	ENST00000396592		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000474288	ENST00000422365		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000474288	ENST00000492775		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000474288	ENST00000469823		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000474288	ENST00000313616		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000474288	ENST00000541540		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000218328	ENST00000396592		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000218328	ENST00000422365		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000218328	ENST00000492775		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000218328	ENST00000469823		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000218328	ENST00000313616		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-intron	ENST00000218328	ENST00000541540		ChiTaRS3.1			BQ215337	HUWE1	chrX	53571540	-	MCMDC2	chr8	67834957	-
intron-3CDS	ENST00000374736	ENST00000374807		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000374736	ENST00000374811		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000374736	ENST00000374804		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3UTR	ENST00000374736	ENST00000312391		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000494467	ENST00000374807		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000494467	ENST00000374811		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000494467	ENST00000374804		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3UTR	ENST00000494467	ENST00000312391		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000423487	ENST00000374807		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000423487	ENST00000374811		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000423487	ENST00000374804		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3UTR	ENST00000423487	ENST00000312391		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000374733	ENST00000374807		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000374733	ENST00000374811		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3CDS	ENST00000374733	ENST00000374804		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
intron-3UTR	ENST00000374733	ENST00000312391		ChiTaRS3.1			AK130814	ABCA1	chr9	107576733	-	LAS1L	chrX	64737950	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15920	COL1A1	chr17	48264844	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15920	COL1A1	chr17	48264844	-	PDGFB	chr22	39631879	-
3UTR-intron	ENST00000529193	ENST00000347401		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000353578		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000295550		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000472056		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000409809		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000346358		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000392004		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000392003		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000529193	ENST00000473258		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000347401		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000353578		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000295550		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000472056		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000409809		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000346358		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000392004		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000392003		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
3UTR-intron	ENST00000288400	ENST00000473258		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000347401		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000353578		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000295550		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000472056		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000409809		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000346358		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000392004		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000392003		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-intron	ENST00000534616	ENST00000473258		ChiTaRS3.1			CA447052	CREB3L1	chr11	46342597	-	COL6A3	chr2	238261986	+
intron-5UTR	ENST00000610125	ENST00000418115		ChiTaRS3.1			DA979164	HIST2H4A	chr1	149832337	-	RHOA	chr3	49449452	-
intron-intron	ENST00000610125	ENST00000454011		ChiTaRS3.1			DA979164	HIST2H4A	chr1	149832337	-	RHOA	chr3	49449452	-
intron-intron	ENST00000610125	ENST00000422781		ChiTaRS3.1			DA979164	HIST2H4A	chr1	149832337	-	RHOA	chr3	49449452	-
intron-5UTR	ENST00000610125	ENST00000265538		ChiTaRS3.1			DA979164	HIST2H4A	chr1	149832337	-	RHOA	chr3	49449452	-
5CDS-3UTR	ENST00000344063	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000344063	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000344063	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000431533	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000431533	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000431533	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000428193	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000428193	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000428193	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000558815	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558815	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558815	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000560583	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560583	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560583	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000560055	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560055	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560055	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000559463	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000559463	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000559463	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000558131	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558131	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558131	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000558752	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558752	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558752	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000458349	ENST00000318008		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000458349	ENST00000433206		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000458349	ENST00000435347		ChiTaRS3.1			BE388585	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
3UTR-3UTR	ENST00000199764	ENST00000351773		ChiTaRS3.1			BF744189	CEACAM6	chr19	42274774	+	ZNF37A	chr10	38411258	+
3UTR-3UTR	ENST00000199764	ENST00000361085		ChiTaRS3.1			BF744189	CEACAM6	chr19	42274774	+	ZNF37A	chr10	38411258	+
3UTR-intron	ENST00000199764	ENST00000479469		ChiTaRS3.1			BF744189	CEACAM6	chr19	42274774	+	ZNF37A	chr10	38411258	+
3UTR-3UTR	ENST00000374580	ENST00000542754		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374580	ENST00000313566		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374580	ENST00000216366		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374580	ENST00000334725		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-3UTR	ENST00000374580	ENST00000554609		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374580	ENST00000554345		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-3UTR	ENST00000374574	ENST00000542754		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374574	ENST00000313566		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374574	ENST00000216366		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374574	ENST00000334725		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-3UTR	ENST00000374574	ENST00000554609		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
3UTR-intron	ENST00000374574	ENST00000554345		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
intron-3UTR	ENST00000479069	ENST00000542754		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
intron-intron	ENST00000479069	ENST00000313566		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
intron-intron	ENST00000479069	ENST00000216366		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
intron-intron	ENST00000479069	ENST00000334725		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
intron-3UTR	ENST00000479069	ENST00000554609		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
intron-intron	ENST00000479069	ENST00000554345		ChiTaRS3.1			W23313	BMPR2	chr2	203428962	+	AP4S1	chr14	31562347	+
5CDS-3UTR	ENST00000395792	ENST00000256637		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
5CDS-intron	ENST00000395792	ENST00000538502		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
5CDS-intron	ENST00000395792	ENST00000482236		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
5CDS-3UTR	ENST00000226359	ENST00000256637		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
5CDS-intron	ENST00000226359	ENST00000538502		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
5CDS-intron	ENST00000226359	ENST00000482236		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
intron-3UTR	ENST00000506820	ENST00000256637		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
intron-intron	ENST00000506820	ENST00000538502		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
intron-intron	ENST00000506820	ENST00000482236		ChiTaRS3.1			BP238936	AFP	chr4	74315824	+	SORT1	chr1	109855264	-
5CDS-3UTR	ENST00000328195	ENST00000193322		ChiTaRS3.1			DB502399	PROSC	chr8	37623876	+	OSTM1	chr6	108363953	-
5CDS-5UTR	ENST00000328195	ENST00000492130		ChiTaRS3.1			DB502399	PROSC	chr8	37623876	+	OSTM1	chr6	108363953	-
5CDS-intron	ENST00000310144	ENST00000483195		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000394019		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000423644		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000346834		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000359484		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000357822		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000358683		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000377632		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000310144	ENST00000377634		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000483195		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000394019		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000423644		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000346834		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000359484		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000357822		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000358683		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000377632		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-intron	ENST00000582420	ENST00000377634		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000483195		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000394019		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000423644		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000346834		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000359484		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000357822		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000358683		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000377632		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000580864	ENST00000377634		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000483195		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000394019		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000423644		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000346834		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000359484		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000357822		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000358683		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000377632		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000375812	ENST00000377634		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000483195		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000394019		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000423644		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000346834		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000359484		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000357822		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000358683		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000377632		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
5CDS-intron	ENST00000581882	ENST00000377634		ChiTaRS3.1			CN413033	PSMC5	chr17	61907669	+	SLC4A5	chr2	74588563	-
intron-5UTR	ENST00000292577	ENST00000292577		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000292577	ENST00000250974		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000292577	ENST00000590661		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000250974	ENST00000292577		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000250974	ENST00000250974		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000250974	ENST00000590661		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000590661	ENST00000292577		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000590661	ENST00000250974		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-5UTR	ENST00000590661	ENST00000590661		ChiTaRS3.1			BM049662	ABHD17A	chr19	1880018	-	ABHD17A	chr19	1881569	-
intron-3UTR	ENST00000342992	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000342992	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3UTR	ENST00000460472	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000460472	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3UTR	ENST00000589042	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000589042	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3UTR	ENST00000342175	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000342175	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3UTR	ENST00000359218	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000359218	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3UTR	ENST00000591111	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000591111	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3UTR	ENST00000360870	ENST00000203407		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-intron	ENST00000360870	ENST00000493806		ChiTaRS3.1			BC029400	TTN	chr2	179664331	-	UQCRC1	chr3	48636516	-
intron-3CDS	ENST00000303927	ENST00000367993		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3CDS	ENST00000303927	ENST00000392179		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3CDS	ENST00000303927	ENST00000476409		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3UTR	ENST00000303927	ENST00000465923		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3CDS	ENST00000530979	ENST00000367993		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3CDS	ENST00000530979	ENST00000392179		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3CDS	ENST00000530979	ENST00000476409		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
intron-3UTR	ENST00000530979	ENST00000465923		ChiTaRS3.1			AA946663	PRKCDBP	chr11	6340428	+	NDUFS2	chr1	161180161	-
5CDS-5UTR	ENST00000307296	ENST00000392750		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000307296	ENST00000473645		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000307296	ENST00000497056		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-intron	ENST00000307296	ENST00000492396		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000307296	ENST00000461494		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000307296	ENST00000470131		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000307296	ENST00000487947		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000307296	ENST00000471885		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-intron	ENST00000307296	ENST00000487678		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000392750		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000473645		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000497056		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-intron	ENST00000457054	ENST00000492396		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000461494		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000470131		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000487947		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-5UTR	ENST00000457054	ENST00000471885		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
5CDS-intron	ENST00000457054	ENST00000487678		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000392750		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000473645		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000497056		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-intron	ENST00000498147	ENST00000492396		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000461494		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000470131		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000487947		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-5UTR	ENST00000498147	ENST00000471885		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-intron	ENST00000498147	ENST00000487678		ChiTaRS3.1			BE829522	PDCD6IP	chr3	33895473	+	PDCD10	chr3	167437957	-
intron-3CDS	ENST00000358825	ENST00000295834		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000358825	ENST00000393750		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000358825	ENST00000495375		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000304538	ENST00000295834		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000304538	ENST00000393750		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000304538	ENST00000495375		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000360871	ENST00000295834		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000360871	ENST00000393750		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000360871	ENST00000495375		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000423662	ENST00000295834		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000423662	ENST00000393750		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000423662	ENST00000495375		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000528746	ENST00000295834		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000528746	ENST00000393750		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000528746	ENST00000495375		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000526082	ENST00000295834		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-3CDS	ENST00000526082	ENST00000393750		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000526082	ENST00000495375		ChiTaRS3.1			AK000234	PRDM10	chr11	129772259	-	FABP1	chr2	88425782	-
intron-5UTR	ENST00000342085	ENST00000318561		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000342085	ENST00000521315		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000342085	ENST00000437090		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000342085	ENST00000520605		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000342085	ENST00000522109		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000342085	ENST00000524255		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-intron	ENST00000342085	ENST00000522880		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000441549	ENST00000318561		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000441549	ENST00000521315		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000441549	ENST00000437090		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000441549	ENST00000520605		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000441549	ENST00000522109		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000441549	ENST00000524255		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-intron	ENST00000441549	ENST00000522880		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000268673	ENST00000318561		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000268673	ENST00000521315		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000268673	ENST00000437090		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000268673	ENST00000520605		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000268673	ENST00000522109		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000268673	ENST00000524255		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-intron	ENST00000268673	ENST00000522880		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000354836	ENST00000318561		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000354836	ENST00000521315		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000354836	ENST00000437090		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000354836	ENST00000520605		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000354836	ENST00000522109		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000354836	ENST00000524255		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-intron	ENST00000354836	ENST00000522880		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000389224	ENST00000318561		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000389224	ENST00000521315		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000389224	ENST00000437090		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000389224	ENST00000520605		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000389224	ENST00000522109		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000389224	ENST00000524255		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-intron	ENST00000389224	ENST00000522880		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000471311	ENST00000318561		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000471311	ENST00000521315		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000471311	ENST00000437090		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000471311	ENST00000520605		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000471311	ENST00000522109		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000471311	ENST00000524255		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-intron	ENST00000471311	ENST00000522880		ChiTaRS3.1			BF875520	PDPK1	chr16	2604669	-	SFTPC	chr8	22019315	+
intron-5UTR	ENST00000317977	ENST00000404648		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000405164		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000336098		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000407946		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000404648		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000405164		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000336098		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000407946		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000404648		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000405164		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000336098		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000407946		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000404648		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000405164		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000336098		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000407946		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000404648		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000405164		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000336098		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000407946		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000404648		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000405164		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000336098		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000407946		ChiTaRS3.1			AV657449	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000409939	ENST00000451562		ChiTaRS3.1			BC015680	TBC1D10B	chr16	30368603	-	PPIA	chr7	44836308	+
intron-5UTR	ENST00000409939	ENST00000468812		ChiTaRS3.1			BC015680	TBC1D10B	chr16	30368603	-	PPIA	chr7	44836308	+
intron-5UTR	ENST00000409939	ENST00000489459		ChiTaRS3.1			BC015680	TBC1D10B	chr16	30368603	-	PPIA	chr7	44836308	+
intron-5UTR	ENST00000409939	ENST00000355968		ChiTaRS3.1			BC015680	TBC1D10B	chr16	30368603	-	PPIA	chr7	44836308	+
intron-intron	ENST00000409939	ENST00000480603		ChiTaRS3.1			BC015680	TBC1D10B	chr16	30368603	-	PPIA	chr7	44836308	+
intron-intron	ENST00000375541	ENST00000327495		ChiTaRS3.1			AK075135	CROCC	chr1	17067175	+	PSG3	chr19	43383866	-
intron-intron	ENST00000375541	ENST00000595140		ChiTaRS3.1			AK075135	CROCC	chr1	17067175	+	PSG3	chr19	43383866	-
intron-intron	ENST00000375541	ENST00000490592		ChiTaRS3.1			AK075135	CROCC	chr1	17067175	+	PSG3	chr19	43383866	-
intron-intron	ENST00000467938	ENST00000327495		ChiTaRS3.1			AK075135	CROCC	chr1	17067175	+	PSG3	chr19	43383866	-
intron-intron	ENST00000467938	ENST00000595140		ChiTaRS3.1			AK075135	CROCC	chr1	17067175	+	PSG3	chr19	43383866	-
intron-intron	ENST00000467938	ENST00000490592		ChiTaRS3.1			AK075135	CROCC	chr1	17067175	+	PSG3	chr19	43383866	-
intron-3CDS	ENST00000492242	ENST00000389857		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000492242	ENST00000331194		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000492242	ENST00000389856		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000492242	ENST00000553403		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000492242	ENST00000554165		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-3CDS	ENST00000382291	ENST00000389857		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382291	ENST00000331194		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382291	ENST00000389856		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382291	ENST00000553403		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382291	ENST00000554165		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-3CDS	ENST00000382285	ENST00000389857		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382285	ENST00000331194		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382285	ENST00000389856		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382285	ENST00000553403		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
3UTR-intron	ENST00000382285	ENST00000554165		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-3CDS	ENST00000608736	ENST00000389857		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000608736	ENST00000331194		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000608736	ENST00000389856		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000608736	ENST00000553403		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-intron	ENST00000608736	ENST00000554165		ChiTaRS3.1			AB040942	NRSN2	chr20	334388	+	CCDC88C	chr14	91780038	-
intron-3UTR	ENST00000414820	ENST00000601048		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000414820	ENST00000509570		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000414820	ENST00000593892		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000414820	ENST00000601419		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-intron	ENST00000414820	ENST00000595615		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000272610	ENST00000601048		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000272610	ENST00000509570		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000272610	ENST00000593892		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000272610	ENST00000601419		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-intron	ENST00000272610	ENST00000595615		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000440566	ENST00000601048		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000440566	ENST00000509570		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000440566	ENST00000593892		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000440566	ENST00000601419		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-intron	ENST00000440566	ENST00000595615		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000468548	ENST00000601048		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000468548	ENST00000509570		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000468548	ENST00000593892		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-3UTR	ENST00000468548	ENST00000601419		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
intron-intron	ENST00000468548	ENST00000595615		ChiTaRS3.1			AA503553	FAHD2B	chr2	97749488	+	SEPW1	chr19	48287745	-
Frame-shit	ENST00000537855	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000537855	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000537855	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
Frame-shit	ENST00000379096	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000379096	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000379096	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
Frame-shit	ENST00000518937	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000518937	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000518937	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5UTR-3CDS	ENST00000519303	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5UTR-5UTR	ENST00000519303	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5UTR-5UTR	ENST00000519303	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
Frame-shit	ENST00000517427	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000517427	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000517427	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
Frame-shit	ENST00000520527	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000520527	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000520527	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
Frame-shit	ENST00000448733	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000448733	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000448733	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
Frame-shit	ENST00000379097	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000379097	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5CDS-5UTR	ENST00000379097	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
intron-3CDS	ENST00000523395	ENST00000287394		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
intron-5UTR	ENST00000523395	ENST00000521903		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
intron-5UTR	ENST00000523395	ENST00000534257		ChiTaRS3.1			BU429623	TPD52	chr8	80976712	-	ATAD2	chr8	124373888	-
5UTR-intron	ENST00000332149	ENST00000398907		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398905		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000288319		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398897		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398911		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000398910		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000417133		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000442448		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000453032		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000398919		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000429727		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000485493		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398907		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398905		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000288319		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398897		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398911		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000398910		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000417133		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000442448		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000453032		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000398919		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000429727		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000485493		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398907		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398905		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000288319		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398897		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398911		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000398910		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000417133		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000442448		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000453032		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000398919		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000429727		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000485493		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398907		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398905		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000288319		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398897		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398911		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000398910		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000417133		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000442448		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000453032		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000398919		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000429727		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000485493		ChiTaRS3.1			EU090248	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-3CDS	ENST00000352732	ENST00000379540		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-3CDS	ENST00000352732	ENST00000379521		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-3CDS	ENST00000352732	ENST00000318524		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-intron	ENST00000352732	ENST00000463421		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-3CDS	ENST00000565973	ENST00000379540		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-3CDS	ENST00000565973	ENST00000379521		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-3CDS	ENST00000565973	ENST00000318524		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5UTR-intron	ENST00000565973	ENST00000463421		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
intron-3CDS	ENST00000355100	ENST00000379540		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
intron-3CDS	ENST00000355100	ENST00000379521		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
intron-3CDS	ENST00000355100	ENST00000318524		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
intron-intron	ENST00000355100	ENST00000463421		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
3UTR-3CDS	ENST00000562254	ENST00000379540		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
3UTR-3CDS	ENST00000562254	ENST00000379521		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
3UTR-3CDS	ENST00000562254	ENST00000318524		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
3UTR-intron	ENST00000562254	ENST00000463421		ChiTaRS3.1			DB209231	ABHD2	chr15	89631796	+	NFX1	chr9	33301258	+
5CDS-intron	ENST00000378322	ENST00000409776		ChiTaRS3.1			DB099117	WRAP73	chr1	3563971	-	RGPD1	chr2	88093714	-
5CDS-intron	ENST00000378322	ENST00000398193		ChiTaRS3.1			DB099117	WRAP73	chr1	3563971	-	RGPD1	chr2	88093714	-
5CDS-intron	ENST00000378322	ENST00000559485		ChiTaRS3.1			DB099117	WRAP73	chr1	3563971	-	RGPD1	chr2	88093714	-
5CDS-intron	ENST00000270708	ENST00000409776		ChiTaRS3.1			DB099117	WRAP73	chr1	3563971	-	RGPD1	chr2	88093714	-
5CDS-intron	ENST00000270708	ENST00000398193		ChiTaRS3.1			DB099117	WRAP73	chr1	3563971	-	RGPD1	chr2	88093714	-
5CDS-intron	ENST00000270708	ENST00000559485		ChiTaRS3.1			DB099117	WRAP73	chr1	3563971	-	RGPD1	chr2	88093714	-
intron-3CDS	ENST00000434013	ENST00000311915		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000434013	ENST00000544871		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000434013	ENST00000398055		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-intron	ENST00000434013	ENST00000540673		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000541064	ENST00000311915		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000541064	ENST00000544871		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000541064	ENST00000398055		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-intron	ENST00000541064	ENST00000540673		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000555619	ENST00000311915		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000555619	ENST00000544871		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000555619	ENST00000398055		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-intron	ENST00000555619	ENST00000540673		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000238633	ENST00000311915		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000238633	ENST00000544871		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000238633	ENST00000398055		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-intron	ENST00000238633	ENST00000540673		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000557510	ENST00000311915		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000557510	ENST00000544871		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-3CDS	ENST00000557510	ENST00000398055		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-intron	ENST00000557510	ENST00000540673		ChiTaRS3.1			W44590	NPC2	chr14	74946962	+	C12orf66	chr12	64588338	+
intron-intron	ENST00000253363	ENST00000496972		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000405222		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000407661		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000406818		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000407038		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000404103		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000407186		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000288642		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000545439		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000253363	ENST00000472690		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000496972		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000405222		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000407661		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000406818		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000407038		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000404103		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000407186		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000288642		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000545439		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000361162	ENST00000472690		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000496972		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000405222		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000407661		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000406818		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000407038		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000404103		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000407186		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000288642		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000545439		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000528062	ENST00000472690		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000496972		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000405222		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000407661		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000406818		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000407038		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000404103		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000407186		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000288642		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000545439		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000407261	ENST00000472690		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000496972		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000405222		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000407661		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000406818		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000407038		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000404103		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000407186		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000288642		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000545439		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000397370	ENST00000472690		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000496972		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000405222		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000407661		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000406818		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000407038		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000404103		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000407186		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000288642		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000545439		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-intron	ENST00000463098	ENST00000472690		ChiTaRS3.1			CV351209	RBM39	chr20	34302120	-	DTNB	chr2	25744341	-
intron-3UTR	ENST00000280772	ENST00000308964		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000280772	ENST00000586790		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000280772	ENST00000591578		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000280772	ENST00000588740		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-intron	ENST00000280772	ENST00000591241		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000373827	ENST00000308964		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000373827	ENST00000586790		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000373827	ENST00000591578		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000373827	ENST00000588740		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-intron	ENST00000373827	ENST00000591241		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000355288	ENST00000308964		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000355288	ENST00000586790		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000355288	ENST00000591578		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000355288	ENST00000588740		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-intron	ENST00000355288	ENST00000591241		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000503366	ENST00000308964		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000503366	ENST00000586790		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000503366	ENST00000591578		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000503366	ENST00000588740		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-intron	ENST00000503366	ENST00000591241		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000510382	ENST00000308964		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000510382	ENST00000586790		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000510382	ENST00000591578		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000510382	ENST00000588740		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-intron	ENST00000510382	ENST00000591241		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000460468	ENST00000308964		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000460468	ENST00000586790		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000460468	ENST00000591578		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-3UTR	ENST00000460468	ENST00000588740		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
intron-intron	ENST00000460468	ENST00000591241		ChiTaRS3.1			BX107511	ANK3	chr10	61844520	-	CCDC106	chr19	56164472	+
3UTR-3CDS	ENST00000491306	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
3UTR-3CDS	ENST00000491306	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
3UTR-3CDS	ENST00000491306	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
3UTR-3CDS	ENST00000491306	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
3UTR-3UTR	ENST00000491306	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000600880	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000600880	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000600880	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000600880	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3UTR	ENST00000600880	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000446558	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000446558	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000446558	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000446558	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3UTR	ENST00000446558	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
In-frame	ENST00000456586	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
Frame-shit	ENST00000456586	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
Frame-shit	ENST00000456586	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
Frame-shit	ENST00000456586	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
5CDS-3UTR	ENST00000456586	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000598925	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000598925	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000598925	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000598925	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3UTR	ENST00000598925	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000427280	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000427280	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000427280	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000427280	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3UTR	ENST00000427280	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000441179	ENST00000451562		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000441179	ENST00000468812		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000441179	ENST00000489459		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3CDS	ENST00000441179	ENST00000355968		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-3UTR	ENST00000441179	ENST00000480603		ChiTaRS3.1			BQ227726	RPL37A	chr2	217366187	+	PPIA	chr7	44839426	+
intron-intron	ENST00000375640	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375640	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375641	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375638	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375635	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375639	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375642	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395789	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000375633	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000395788	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000424962	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456268	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000435938	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433752	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000458514	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000549426	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550200	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000430690	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436558	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000456690	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439907	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444974	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000439865	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000413638	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423640	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444192	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551797	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000552514	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000440361	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000443974	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000416886	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436205	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000450610	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000433697	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000414434	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421605	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000444331	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000551957	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000550492	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000423916	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000436495	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000426843	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000421039	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000414536	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400038	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000383384	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383385	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000383383	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000547624	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5CDS-intron	ENST00000550685	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400037	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
5UTR-intron	ENST00000400035	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400034	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000413405		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000414457		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000446807		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000423223		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000445521		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000455774		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000430295		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000608994		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000609413		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000537908		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000427063		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-intron	ENST00000400039	ENST00000438202		ChiTaRS3.1			BC092440	C6orf48	chr6	3096503	+	PTCHD3P1	chr10	29751234	-
intron-3UTR	ENST00000264036	ENST00000355848		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000264036	ENST00000407324		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000264036	ENST00000410067		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000264036	ENST00000409302		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-intron	ENST00000264036	ENST00000470189		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000392814	ENST00000355848		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000392814	ENST00000407324		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000392814	ENST00000410067		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000392814	ENST00000409302		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-intron	ENST00000392814	ENST00000470189		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000530144	ENST00000355848		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000530144	ENST00000407324		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000530144	ENST00000410067		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-3UTR	ENST00000530144	ENST00000409302		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
intron-intron	ENST00000530144	ENST00000470189		ChiTaRS3.1			N42327	MCAM	chr11	119179633	-	C1D	chr2	68269926	-
3UTR-5UTR	ENST00000423278	ENST00000566620		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000268613		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000565636		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000431540		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000428848		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000567445		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000446376		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000569454		ChiTaRS3.1			L34058	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000334512	ENST00000439211		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
3UTR-intron	ENST00000334512	ENST00000505337		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
3UTR-intron	ENST00000334512	ENST00000511032		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
3UTR-intron	ENST00000334512	ENST00000504396		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
3UTR-intron	ENST00000334512	ENST00000513048		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000478357	ENST00000439211		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000478357	ENST00000505337		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000478357	ENST00000511032		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000478357	ENST00000504396		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000478357	ENST00000513048		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000446377	ENST00000439211		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000446377	ENST00000505337		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000446377	ENST00000511032		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000446377	ENST00000504396		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-intron	ENST00000446377	ENST00000513048		ChiTaRS3.1			BC068072	ZMIZ1	chr10	81073434	+	DHFR	chr5	79947722	-
intron-3CDS	ENST00000391726	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391726	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391726	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391726	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391726	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
Frame-shit	ENST00000469767	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000469767	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000469767	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000469767	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000469767	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
Frame-shit	ENST00000355524	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000355524	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000355524	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000355524	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000355524	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
Frame-shit	ENST00000345937	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000345937	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000345937	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000345937	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000345937	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
Frame-shit	ENST00000391725	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000391725	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000391725	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000391725	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000391725	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-3CDS	ENST00000391724	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391724	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391724	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391724	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391724	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-3CDS	ENST00000359272	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000359272	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000359272	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000359272	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000359272	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
3UTR-3CDS	ENST00000482092	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
3UTR-intron	ENST00000482092	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
3UTR-intron	ENST00000482092	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
3UTR-intron	ENST00000482092	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
3UTR-intron	ENST00000482092	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-3CDS	ENST00000391723	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391723	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391723	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391723	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000391723	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-3CDS	ENST00000353758	ENST00000263097		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000353758	ENST00000606983		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000353758	ENST00000348419		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000353758	ENST00000565096		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
intron-intron	ENST00000353758	ENST00000562958		ChiTaRS3.1			BI909368	FCAR	chr19	55386822	+	CNN2	chr19	1036127	+
5CDS-intron	ENST00000372067	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000417285	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
intron-intron	ENST00000324450	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000413642	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000372055	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000482630	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000425836	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
intron-intron	ENST00000372064	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
intron-intron	ENST00000372077	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000520948	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000523873	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000523950	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000518689	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000523125	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
intron-intron	ENST00000457104	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000518824	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
5CDS-intron	ENST00000230480	ENST00000390394		ChiTaRS3.1			BI869727	VEGFA	chr6	43749719	+	TRBV20-1	chr16	2009600	+
intron-3CDS	ENST00000401886	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000401886	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401886	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401886	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401886	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401886	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401886	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000401886	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000447208	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000447208	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000447208	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000447208	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000447208	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000447208	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000447208	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000447208	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000398042	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000398042	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000398042	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000398042	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000398042	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000398042	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000398042	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-5UTR	ENST00000398042	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000432883	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000432883	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000432883	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000432883	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000432883	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000432883	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000432883	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-5UTR	ENST00000432883	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000327374	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000327374	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000327374	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000327374	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000327374	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000327374	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000327374	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-5UTR	ENST00000327374	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000479679	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000479679	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000479679	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000479679	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000479679	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000479679	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000479679	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000479679	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000401833	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000401833	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401833	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401833	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401833	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401833	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000401833	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000401833	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000434570	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000434570	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000434570	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000434570	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000434570	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000434570	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000434570	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000434570	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000420290	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-3CDS	ENST00000420290	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000420290	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000420290	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000420290	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000420290	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-intron	ENST00000420290	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000420290	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000456048	ENST00000345330		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-3CDS	ENST00000456048	ENST00000351217		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000456048	ENST00000542234		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000456048	ENST00000562924		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000456048	ENST00000563691		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000456048	ENST00000545878		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-intron	ENST00000456048	ENST00000287226		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
3UTR-5UTR	ENST00000456048	ENST00000564551		ChiTaRS3.1			AA873180	TANGO2	chr22	20053379	-	NPTN	chr15	73879884	+
intron-5UTR	ENST00000343638	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000343638	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000343638	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000343638	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000343638	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000302904	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000302904	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000302904	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000302904	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000302904	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000527034	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000527034	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000527034	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000527034	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000527034	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000533177	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000533177	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000533177	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000533177	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000533177	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000436088	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000436088	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000436088	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000436088	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000436088	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000393606	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000393606	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000393606	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000393606	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000393606	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000529383	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000529383	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000529383	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000529383	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000529383	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000526094	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000526094	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000526094	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000526094	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000526094	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000537550	ENST00000301634		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000537550	ENST00000405273		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000537550	ENST00000588734		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000537550	ENST00000590862		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
intron-5UTR	ENST00000537550	ENST00000590430		ChiTaRS3.1			BE729700	UBTF	chr17	42283359	-	TK1	chr17	76183116	-
In-frame	ENST00000517671	ENST00000389048		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000517671	ENST00000431873		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000517671	ENST00000498037		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
In-frame	ENST00000296930	ENST00000389048		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000296930	ENST00000431873		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000296930	ENST00000498037		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
In-frame	ENST00000351986	ENST00000389048		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000351986	ENST00000431873		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000351986	ENST00000498037		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
In-frame	ENST00000393820	ENST00000389048		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000393820	ENST00000431873		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000393820	ENST00000498037		ChiTaRS3.1			D45915	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
intron-intron	ENST00000283928	ENST00000444761		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409105		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409913		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000319466		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409800		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000493804		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409207		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409973		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409147		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000283928	ENST00000409218		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000444761		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409105		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409913		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000319466		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409800		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000493804		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409207		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409973		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409147		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-intron	ENST00000466516	ENST00000409218		ChiTaRS3.1			CA308526	JAZF1	chr7	27872556	+	MCFD2	chr2	47136175	+
intron-3CDS	ENST00000457167	ENST00000366603		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000457167	ENST00000264183		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000457167	ENST00000349213		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-intron	ENST00000457167	ENST00000494543		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000426588	ENST00000366603		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000426588	ENST00000264183		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000426588	ENST00000349213		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-intron	ENST00000426588	ENST00000494543		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000316603	ENST00000366603		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000316603	ENST00000264183		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000316603	ENST00000349213		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-intron	ENST00000316603	ENST00000494543		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000589547	ENST00000366603		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000589547	ENST00000264183		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-3CDS	ENST00000589547	ENST00000349213		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
intron-intron	ENST00000589547	ENST00000494543		ChiTaRS3.1			AW814689	DNAJC7	chr17	40141507	-	ARID4B	chr1	235359429	-
In-frame	ENST00000540746	ENST00000548249		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000540746	ENST00000537439		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000540746	ENST00000434715		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000540746	ENST00000543672		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
5CDS-intron	ENST00000540746	ENST00000551400		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000544216	ENST00000548249		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000544216	ENST00000537439		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000544216	ENST00000434715		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000544216	ENST00000543672		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
5CDS-intron	ENST00000544216	ENST00000551400		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000433627	ENST00000548249		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000433627	ENST00000537439		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000433627	ENST00000434715		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
In-frame	ENST00000433627	ENST00000543672		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
5CDS-intron	ENST00000433627	ENST00000551400		ChiTaRS3.1			BF686433	LSM14A	chr19	34687668	+	DCTN2	chr12	57925890	-
intron-3CDS	ENST00000263847	ENST00000323848		ChiTaRS3.1			BP420837	OSBP	chr11	59382724	-	SRRM1	chr1	24996771	+
intron-3CDS	ENST00000263847	ENST00000447431		ChiTaRS3.1			BP420837	OSBP	chr11	59382724	-	SRRM1	chr1	24996771	+
intron-3CDS	ENST00000263847	ENST00000374389		ChiTaRS3.1			BP420837	OSBP	chr11	59382724	-	SRRM1	chr1	24996771	+
intron-3UTR	ENST00000263847	ENST00000479034		ChiTaRS3.1			BP420837	OSBP	chr11	59382724	-	SRRM1	chr1	24996771	+
intron-intron	ENST00000263847	ENST00000537199		ChiTaRS3.1			BP420837	OSBP	chr11	59382724	-	SRRM1	chr1	24996771	+
3UTR-3CDS	ENST00000227507	ENST00000413834		ChiTaRS3.1			BE077401	CCND1	chr11	69468806	+	ATP5J2-PTCD1	chr7	99057772	-
3UTR-intron	ENST00000227507	ENST00000437572		ChiTaRS3.1			BE077401	CCND1	chr11	69468806	+	ATP5J2-PTCD1	chr7	99057772	-
intron-3CDS	ENST00000536559	ENST00000413834		ChiTaRS3.1			BE077401	CCND1	chr11	69468806	+	ATP5J2-PTCD1	chr7	99057772	-
intron-intron	ENST00000536559	ENST00000437572		ChiTaRS3.1			BE077401	CCND1	chr11	69468806	+	ATP5J2-PTCD1	chr7	99057772	-
intron-3UTR	ENST00000252818	ENST00000216252		ChiTaRS3.1			AI494246	JUND	chr19	18390825	-	PHF5A	chr22	41855898	-
intron-intron	ENST00000252818	ENST00000491254		ChiTaRS3.1			AI494246	JUND	chr19	18390825	-	PHF5A	chr22	41855898	-
5CDS-intron	ENST00000359611	ENST00000438284		ChiTaRS3.1			BP225302	HIST1H2AM	chr6	27860480	-	HRH1	chr3	11264553	+
5CDS-intron	ENST00000359611	ENST00000431010		ChiTaRS3.1			BP225302	HIST1H2AM	chr6	27860480	-	HRH1	chr3	11264553	+
5CDS-intron	ENST00000359611	ENST00000397056		ChiTaRS3.1			BP225302	HIST1H2AM	chr6	27860480	-	HRH1	chr3	11264553	+
intron-3CDS	ENST00000398411	ENST00000358136		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000398411	ENST00000356315		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000496628		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000543766		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000471923		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398411	ENST00000543710		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000376925	ENST00000358136		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000376925	ENST00000356315		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000496628		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000543766		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000471923		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000376925	ENST00000543710		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000398409	ENST00000358136		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000398409	ENST00000356315		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000496628		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000543766		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000471923		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-intron	ENST00000398409	ENST00000543710		ChiTaRS3.1			AA446900	CST3	chr20	23614371	+	VPS13D	chr1	12423290	-
intron-3CDS	ENST00000361524	ENST00000202773		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000361524	ENST00000424576		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000584787	ENST00000202773		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000584787	ENST00000424576		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000538137	ENST00000202773		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000538137	ENST00000424576		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000579111	ENST00000202773		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
intron-3CDS	ENST00000579111	ENST00000424576		ChiTaRS3.1			AK126570	ZNF521	chr18	22839489	-	RPL6	chr12	112846249	-
In-frame	ENST00000252674	ENST00000534358		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
In-frame	ENST00000252674	ENST00000389506		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
In-frame	ENST00000252674	ENST00000354520		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
5CDS-intron	ENST00000252674	ENST00000420751		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
intron-3CDS	ENST00000585588	ENST00000534358		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
intron-3CDS	ENST00000585588	ENST00000389506		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
intron-3CDS	ENST00000585588	ENST00000354520		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
intron-intron	ENST00000585588	ENST00000420751		ChiTaRS3.1			AF373587	MLLT1	chr19	6262241	-	KMT2A	chr11	118359329	+
In-frame	ENST00000472531	ENST00000378308		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000472531	ENST00000324545		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000491356	ENST00000378308		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000491356	ENST00000324545		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000340684	ENST00000378308		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000340684	ENST00000324545		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000543802	ENST00000378308		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
In-frame	ENST00000543802	ENST00000324545		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
5UTR-3CDS	ENST00000491848	ENST00000378308		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
5UTR-3CDS	ENST00000491848	ENST00000324545		ChiTaRS3.1			DB032780	ZNF124	chr1	247322305	-	USP9X	chrX	41077623	+
5CDS-intron	ENST00000264229	ENST00000390168		ChiTaRS3.1			AA368378	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
5CDS-intron	ENST00000541073	ENST00000390168		ChiTaRS3.1			AA368378	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
5CDS-intron	ENST00000504228	ENST00000390168		ChiTaRS3.1			AA368378	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
intron-intron	ENST00000505410	ENST00000390168		ChiTaRS3.1			AA368378	KIAA1211	chr4	57182852	+	H19	chr11	2017007	-
intron-3CDS	ENST00000393029	ENST00000368679		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000393029	ENST00000368676		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-5UTR	ENST00000393029	ENST00000467145		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000393028	ENST00000368679		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000393028	ENST00000368676		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-5UTR	ENST00000393028	ENST00000467145		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000345425	ENST00000368679		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000345425	ENST00000368676		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-5UTR	ENST00000345425	ENST00000467145		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000393033	ENST00000368679		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000393033	ENST00000368676		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-5UTR	ENST00000393033	ENST00000467145		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000591349	ENST00000368679		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000591349	ENST00000368676		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-5UTR	ENST00000591349	ENST00000467145		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000586027	ENST00000368679		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-3CDS	ENST00000586027	ENST00000368676		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
intron-5UTR	ENST00000586027	ENST00000467145		ChiTaRS3.1			BG002551	GIPC1	chr19	14591141	-	ADAM12	chr10	127755336	-
3UTR-3CDS	ENST00000397722	ENST00000316448		ChiTaRS3.1			BQ305064	NME4	chr16	450405	+	CALR	chr19	13050924	+
3UTR-3CDS	ENST00000382940	ENST00000316448		ChiTaRS3.1			BQ305064	NME4	chr16	450405	+	CALR	chr19	13050924	+
3UTR-3CDS	ENST00000219479	ENST00000316448		ChiTaRS3.1			BQ305064	NME4	chr16	450405	+	CALR	chr19	13050924	+
3UTR-3CDS	ENST00000450036	ENST00000316448		ChiTaRS3.1			BQ305064	NME4	chr16	450405	+	CALR	chr19	13050924	+
intron-intron	ENST00000326005	ENST00000577297		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000326005	ENST00000498979		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000326005	ENST00000500970		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000326005	ENST00000578923		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000326005	ENST00000530002		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560258	ENST00000577297		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560258	ENST00000498979		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560258	ENST00000500970		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560258	ENST00000578923		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560258	ENST00000530002		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000559753	ENST00000577297		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000559753	ENST00000498979		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000559753	ENST00000500970		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000559753	ENST00000578923		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000559753	ENST00000530002		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560837	ENST00000577297		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560837	ENST00000498979		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560837	ENST00000500970		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560837	ENST00000578923		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
intron-intron	ENST00000560837	ENST00000530002		ChiTaRS3.1			W51772	OAZ2	chr15	64980835	-	USP2-AS1	chr11	119289085	-
5CDS-3UTR	ENST00000456318	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000456318	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-3UTR	ENST00000438240	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000438240	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
intron-3UTR	ENST00000460083	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
intron-intron	ENST00000460083	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-3UTR	ENST00000430783	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000430783	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-3UTR	ENST00000443489	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000443489	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-3UTR	ENST00000452961	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000452961	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-3UTR	ENST00000296223	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000296223	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-3UTR	ENST00000429568	ENST00000296161		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
5CDS-intron	ENST00000429568	ENST00000383661		ChiTaRS3.1			BF001934	POLR2H	chr3	184086046	-	DTX3L	chr3	122292177	-
intron-3CDS	ENST00000384994	ENST00000267101		ChiTaRS3.1			AW389526	NEAT1	chr11	65190764	+	ERBB3	chr12	56495438	+
intron-3CDS	ENST00000384994	ENST00000450146		ChiTaRS3.1			AW389526	NEAT1	chr11	65190764	+	ERBB3	chr12	56495438	+
intron-3CDS	ENST00000384994	ENST00000415288		ChiTaRS3.1			AW389526	NEAT1	chr11	65190764	+	ERBB3	chr12	56495438	+
intron-3CDS	ENST00000384994	ENST00000553131		ChiTaRS3.1			AW389526	NEAT1	chr11	65190764	+	ERBB3	chr12	56495438	+
intron-intron	ENST00000384994	ENST00000411731		ChiTaRS3.1			AW389526	NEAT1	chr11	65190764	+	ERBB3	chr12	56495438	+
intron-intron	ENST00000384994	ENST00000549832		ChiTaRS3.1			AW389526	NEAT1	chr11	65190764	+	ERBB3	chr12	56495438	+
5CDS-intron	ENST00000341567	ENST00000371348		ChiTaRS3.1			BE312302	TMEM248	chr7	66410225	+	TMEM59	chr1	54518888	-
5CDS-intron	ENST00000341567	ENST00000371344		ChiTaRS3.1			BE312302	TMEM248	chr7	66410225	+	TMEM59	chr1	54518888	-
5CDS-5UTR	ENST00000341567	ENST00000234831		ChiTaRS3.1			BE312302	TMEM248	chr7	66410225	+	TMEM59	chr1	54518888	-
5CDS-intron	ENST00000341567	ENST00000371341		ChiTaRS3.1			BE312302	TMEM248	chr7	66410225	+	TMEM59	chr1	54518888	-
5CDS-intron	ENST00000341567	ENST00000470395		ChiTaRS3.1			BE312302	TMEM248	chr7	66410225	+	TMEM59	chr1	54518888	-
5CDS-intron	ENST00000341567	ENST00000371337		ChiTaRS3.1			BE312302	TMEM248	chr7	66410225	+	TMEM59	chr1	54518888	-
intron-intron	ENST00000363840	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363840	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
5CDS-intron	ENST00000365524	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364822	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363859	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000385578	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000363146	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000217074		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000255136		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000537323		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000217073		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000490798		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000372824		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000372819		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-intron	ENST00000364084	ENST00000217075		ChiTaRS3.1			DB268518	GAS5	chr1	173833509	-	PABPC1L	chr20	43589050	-
intron-3CDS	ENST00000476233	ENST00000354179		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000476233	ENST00000439151		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000476233	ENST00000347982		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000476233	ENST00000361032		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-intron	ENST00000476233	ENST00000511258		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000354667	ENST00000354179		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000354667	ENST00000439151		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000354667	ENST00000347982		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000354667	ENST00000361032		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-intron	ENST00000354667	ENST00000511258		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000356674	ENST00000354179		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000356674	ENST00000439151		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000356674	ENST00000347982		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-3CDS	ENST00000356674	ENST00000361032		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
intron-intron	ENST00000356674	ENST00000511258		ChiTaRS3.1			AA928524	HNRNPA2B1	chr7	26231578	+	NSD1	chr5	176637061	-
3UTR-3UTR	ENST00000425792	ENST00000357641		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000425792	ENST00000339717		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000425792	ENST00000534694		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000425792	ENST00000543502		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000425792	ENST00000443324		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-intron	ENST00000425792	ENST00000534400		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000396703	ENST00000357641		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000396703	ENST00000339717		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000396703	ENST00000534694		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000396703	ENST00000543502		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-3UTR	ENST00000396703	ENST00000443324		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
3UTR-intron	ENST00000396703	ENST00000534400		ChiTaRS3.1			BQ375843	UBE2E2	chr3	23631661	+	BRPF3	chr6	36200148	+
intron-3CDS	ENST00000284637	ENST00000229329		ChiTaRS3.1			DA571172	SH3RF1	chr4	170043326	-	CMAS	chr12	22199463	+
intron-3CDS	ENST00000508685	ENST00000229329		ChiTaRS3.1			DA571172	SH3RF1	chr4	170043326	-	CMAS	chr12	22199463	+
intron-3CDS	ENST00000256544	ENST00000229239		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000256544	ENST00000396856		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000256544	ENST00000396861		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000256544	ENST00000396859		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000256544	ENST00000396858		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-3CDS	ENST00000560915	ENST00000229239		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000560915	ENST00000396856		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000560915	ENST00000396861		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000560915	ENST00000396859		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-5UTR	ENST00000560915	ENST00000396858		ChiTaRS3.1			BM464550	KATNBL1	chr15	34439844	+	GAPDH	chr12	6645907	+
intron-3CDS	ENST00000300896	ENST00000356352		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000300896	ENST00000357604		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000300896	ENST00000397053		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-5UTR	ENST00000300896	ENST00000460569		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000592339	ENST00000356352		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000592339	ENST00000357604		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000592339	ENST00000397053		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-5UTR	ENST00000592339	ENST00000460569		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000393003	ENST00000356352		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000393003	ENST00000357604		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000393003	ENST00000397053		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-5UTR	ENST00000393003	ENST00000460569		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000586881	ENST00000356352		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000586881	ENST00000357604		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-3CDS	ENST00000586881	ENST00000397053		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-5UTR	ENST00000586881	ENST00000460569		ChiTaRS3.1			CD639413	USP32	chr17	58407704	-	UPF2	chr10	12077228	-
intron-5UTR	ENST00000474885	ENST00000297991		ChiTaRS3.1			DB163509	RNA5-8S5	chr?	154918	+	AQP3	chr9	33447594	-
intron-5UTR	ENST00000474885	ENST00000493581		ChiTaRS3.1			DB163509	RNA5-8S5	chr?	154918	+	AQP3	chr9	33447594	-
intron-5UTR	ENST00000459522	ENST00000297991		ChiTaRS3.1			DB163509	RNA5-8S5	chr?	154918	+	AQP3	chr9	33447594	-
intron-5UTR	ENST00000459522	ENST00000493581		ChiTaRS3.1			DB163509	RNA5-8S5	chr?	154918	+	AQP3	chr9	33447594	-
3UTR-intron	ENST00000227155	ENST00000555276		ChiTaRS3.1			BE867666	CD82	chr11	44641054	+	SYNJ2BP-COX16	chr14	70834045	-
intron-intron	ENST00000342935	ENST00000555276		ChiTaRS3.1			BE867666	CD82	chr11	44641054	+	SYNJ2BP-COX16	chr14	70834045	-
intron-intron	ENST00000530931	ENST00000555276		ChiTaRS3.1			BE867666	CD82	chr11	44641054	+	SYNJ2BP-COX16	chr14	70834045	-
intron-3CDS	ENST00000329957	ENST00000411503		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000329957	ENST00000311890		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000329957	ENST00000375718		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000329957	ENST00000487046		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000329957	ENST00000406363		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-intron	ENST00000329957	ENST00000545268		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000526462	ENST00000411503		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000526462	ENST00000311890		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000526462	ENST00000375718		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000526462	ENST00000487046		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-3CDS	ENST00000526462	ENST00000406363		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
intron-intron	ENST00000526462	ENST00000545268		ChiTaRS3.1			AK296598	MOB2	chr11	1491665	-	HSPB7	chr1	16342128	-
3UTR-3CDS	ENST00000394485	ENST00000425013		ChiTaRS3.1			CA309051	MT1X	chr16	56718056	-	RNF216	chr7	5780618	+
3UTR-3CDS	ENST00000394485	ENST00000389902		ChiTaRS3.1			CA309051	MT1X	chr16	56718056	-	RNF216	chr7	5780618	+
3UTR-intron	ENST00000394485	ENST00000469375		ChiTaRS3.1			CA309051	MT1X	chr16	56718056	-	RNF216	chr7	5780618	+
intron-3CDS	ENST00000562939	ENST00000425013		ChiTaRS3.1			CA309051	MT1X	chr16	56718056	-	RNF216	chr7	5780618	+
intron-3CDS	ENST00000562939	ENST00000389902		ChiTaRS3.1			CA309051	MT1X	chr16	56718056	-	RNF216	chr7	5780618	+
intron-intron	ENST00000562939	ENST00000469375		ChiTaRS3.1			CA309051	MT1X	chr16	56718056	-	RNF216	chr7	5780618	+
5UTR-5UTR	ENST00000331825	ENST00000334256		ChiTaRS3.1			BJ996632	FTL	chr19	49468644	+	KPNA4	chr3	160283298	-
5UTR-5UTR	ENST00000331825	ENST00000469804		ChiTaRS3.1			BJ996632	FTL	chr19	49468644	+	KPNA4	chr3	160283298	-
3UTR-3UTR	ENST00000346329	ENST00000318008		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
3UTR-intron	ENST00000346329	ENST00000433206		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
3UTR-3UTR	ENST00000346329	ENST00000435347		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
3UTR-3UTR	ENST00000301843	ENST00000318008		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
3UTR-intron	ENST00000301843	ENST00000433206		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
3UTR-3UTR	ENST00000301843	ENST00000435347		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-3UTR	ENST00000527622	ENST00000318008		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-intron	ENST00000527622	ENST00000433206		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-3UTR	ENST00000527622	ENST00000435347		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-3UTR	ENST00000376561	ENST00000318008		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-intron	ENST00000376561	ENST00000433206		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-3UTR	ENST00000376561	ENST00000435347		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-3UTR	ENST00000538675	ENST00000318008		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-intron	ENST00000538675	ENST00000433206		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
intron-3UTR	ENST00000538675	ENST00000435347		ChiTaRS3.1			CB216704	CTTN	chr11	70282233	+	LASP1	chr17	37077084	+
5CDS-intron	ENST00000393352	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393352	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000336660	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000607522	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409177	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000344213	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000393353	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000322142	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000358129	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000409807	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000264258		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409000		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409028		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409320		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409733		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409650		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409038		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
5CDS-intron	ENST00000408995	ENST00000409711		ChiTaRS3.1			AB024057	FHL2	chr2	106002816	-	RPL31	chr2	101676003	-
intron-intron	ENST00000315765	ENST00000565644		ChiTaRS3.1			BQ069758	HEPHL1	chr11	93862345	+	SLC7A5	chr16	87902607	-
intron-intron	ENST00000315765	ENST00000261622		ChiTaRS3.1			BQ069758	HEPHL1	chr11	93862345	+	SLC7A5	chr16	87902607	-
3UTR-3UTR	ENST00000265753	ENST00000331563		ChiTaRS3.1			BU540394	EIF4H	chr7	73611005	+	PKP3	chr11	404687	+
3UTR-intron	ENST00000265753	ENST00000530695		ChiTaRS3.1			BU540394	EIF4H	chr7	73611005	+	PKP3	chr11	404687	+
3UTR-3UTR	ENST00000353999	ENST00000331563		ChiTaRS3.1			BU540394	EIF4H	chr7	73611005	+	PKP3	chr11	404687	+
3UTR-intron	ENST00000353999	ENST00000530695		ChiTaRS3.1			BU540394	EIF4H	chr7	73611005	+	PKP3	chr11	404687	+
intron-3UTR	ENST00000495187	ENST00000331563		ChiTaRS3.1			BU540394	EIF4H	chr7	73611005	+	PKP3	chr11	404687	+
intron-intron	ENST00000495187	ENST00000530695		ChiTaRS3.1			BU540394	EIF4H	chr7	73611005	+	PKP3	chr11	404687	+
intron-3CDS	ENST00000396651	ENST00000392038		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000396651	ENST00000424901		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000396651	ENST00000311278		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000396651	ENST00000579047		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-intron	ENST00000396651	ENST00000581582		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000372209	ENST00000392038		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000372209	ENST00000424901		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000372209	ENST00000311278		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000372209	ENST00000579047		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-intron	ENST00000372209	ENST00000581582		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000485390	ENST00000392038		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000485390	ENST00000424901		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000485390	ENST00000311278		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000485390	ENST00000579047		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-intron	ENST00000485390	ENST00000581582		ChiTaRS3.1			DA657610	RPS8	chr1	45244127	+	AKT2	chr19	40761110	-
intron-3CDS	ENST00000368026	ENST00000340645		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000368026	ENST00000393667		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000368026	ENST00000472829		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000289779	ENST00000340645		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000289779	ENST00000393667		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000289779	ENST00000472829		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000537746	ENST00000340645		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000537746	ENST00000393667		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000537746	ENST00000472829		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000472573	ENST00000340645		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000472573	ENST00000393667		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000472573	ENST00000472829		ChiTaRS3.1			BC057227	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3UTR	ENST00000530124	ENST00000258733		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000530124	ENST00000381990		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000530124	ENST00000409458		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000530124	ENST00000539136		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000530124	ENST00000453162		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000530124	ENST00000478451		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000257247	ENST00000258733		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000257247	ENST00000381990		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000257247	ENST00000409458		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000257247	ENST00000539136		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000257247	ENST00000453162		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000257247	ENST00000478451		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000525875	ENST00000258733		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000525875	ENST00000381990		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000525875	ENST00000409458		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000525875	ENST00000539136		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000525875	ENST00000453162		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000525875	ENST00000478451		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000378024	ENST00000258733		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-3UTR	ENST00000378024	ENST00000381990		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000378024	ENST00000409458		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000378024	ENST00000539136		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000378024	ENST00000453162		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
intron-intron	ENST00000378024	ENST00000478451		ChiTaRS3.1			BG435349	AHNAK	chr11	62291575	-	GPNMB	chr7	23314595	+
3UTR-intron	ENST00000398004	ENST00000392859		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
3UTR-3UTR	ENST00000398004	ENST00000359415		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
3UTR-intron	ENST00000398004	ENST00000534182		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
3UTR-3UTR	ENST00000398004	ENST00000264028		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
intron-intron	ENST00000538043	ENST00000392859		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
intron-3UTR	ENST00000538043	ENST00000359415		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
intron-intron	ENST00000538043	ENST00000534182		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
intron-3UTR	ENST00000538043	ENST00000264028		ChiTaRS3.1			BF510780	SLC35E3	chr12	69159355	-	ARCN1	chr11	118472226	-
3UTR-intron	ENST00000343150	ENST00000380512		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000343150	ENST00000293831		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000343150	ENST00000577269		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000343150	ENST00000582746		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-intron	ENST00000343150	ENST00000581808		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-intron	ENST00000340342	ENST00000380512		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000340342	ENST00000293831		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000340342	ENST00000577269		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000340342	ENST00000582746		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-intron	ENST00000340342	ENST00000581808		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-intron	ENST00000495822	ENST00000380512		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000495822	ENST00000293831		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000495822	ENST00000577269		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-3UTR	ENST00000495822	ENST00000582746		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
3UTR-intron	ENST00000495822	ENST00000581808		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
intron-intron	ENST00000342020	ENST00000380512		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
intron-3UTR	ENST00000342020	ENST00000293831		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
intron-3UTR	ENST00000342020	ENST00000577269		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
intron-3UTR	ENST00000342020	ENST00000582746		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
intron-intron	ENST00000342020	ENST00000581808		ChiTaRS3.1			BQ670981	CTSL	chr9	90346046	+	EIF4A1	chr17	7481876	+
intron-intron	ENST00000296658	ENST00000225402		ChiTaRS3.1			BU507510	CMBL	chr5	10280521	-	AATF	chr17	35316505	-
intron-intron	ENST00000296658	ENST00000590321		ChiTaRS3.1			BU507510	CMBL	chr5	10280521	-	AATF	chr17	35316505	-
intron-intron	ENST00000510532	ENST00000225402		ChiTaRS3.1			BU507510	CMBL	chr5	10280521	-	AATF	chr17	35316505	-
intron-intron	ENST00000510532	ENST00000590321		ChiTaRS3.1			BU507510	CMBL	chr5	10280521	-	AATF	chr17	35316505	-
5CDS-3UTR	ENST00000262460	ENST00000339697		ChiTaRS3.1			N39921	GINS1	chr20	25388532	+	SERINC1	chr6	122765249	-
5CDS-3UTR	ENST00000429262	ENST00000339697		ChiTaRS3.1			N39921	GINS1	chr20	25388532	+	SERINC1	chr6	122765249	-
3UTR-3UTR	ENST00000484893	ENST00000339697		ChiTaRS3.1			N39921	GINS1	chr20	25388532	+	SERINC1	chr6	122765249	-
3UTR-3UTR	ENST00000466490	ENST00000466490		ChiTaRS3.1			T05374	SRPRB	chr3	133538782	+	SRPRB	chr3	133539525	-
intron-intron	ENST00000488594	ENST00000233331		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000488594	ENST00000409917		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000488594	ENST00000469849		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000358966	ENST00000233331		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000358966	ENST00000409917		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000358966	ENST00000469849		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000282841	ENST00000233331		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000282841	ENST00000409917		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000282841	ENST00000469849		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000391855	ENST00000233331		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000391855	ENST00000409917		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000391855	ENST00000469849		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000489692	ENST00000233331		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000489692	ENST00000409917		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-intron	ENST00000489692	ENST00000469849		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
5UTR-intron	ENST00000476121	ENST00000233331		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
5UTR-intron	ENST00000476121	ENST00000409917		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
5UTR-intron	ENST00000476121	ENST00000469849		ChiTaRS3.1			AA325909	GGPS1	chr1	235492966	+	INO80B	chr2	74686460	+
intron-3UTR	ENST00000375098	ENST00000300146		ChiTaRS3.1			BF911658	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000478530	ENST00000300146		ChiTaRS3.1			BF911658	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000342043	ENST00000300146		ChiTaRS3.1			BF911658	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000341469	ENST00000300146		ChiTaRS3.1			BF911658	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
intron-3UTR	ENST00000538344	ENST00000300146		ChiTaRS3.1			BF911658	TRIM14	chr9	100848160	-	PATL1	chr11	59404568	-
3UTR-3CDS	ENST00000378756	ENST00000464873		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000378756	ENST00000322623		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000378756	ENST00000417360		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-intron	ENST00000378756	ENST00000480616		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000378755	ENST00000464873		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000378755	ENST00000322623		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000378755	ENST00000417360		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-intron	ENST00000378755	ENST00000480616		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000536055	ENST00000464873		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000536055	ENST00000322623		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-3CDS	ENST00000536055	ENST00000417360		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
3UTR-intron	ENST00000536055	ENST00000480616		ChiTaRS3.1			BU846118	ATAD3A	chr1	1469657	+	RUVBL1	chr3	127823768	-
intron-3CDS	ENST00000363840	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363840	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363840	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000363840	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000365524	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000365524	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000365524	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000365524	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000364822	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364822	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364822	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000364822	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000363859	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363859	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363859	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000363859	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000385578	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000385578	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000385578	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000385578	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000363146	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363146	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363146	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000363146	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000364084	ENST00000255108		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364084	ENST00000412950		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364084	ENST00000396758		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000364084	ENST00000529729		ChiTaRS3.1			BF182707	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
5CDS-5UTR	ENST00000338368	ENST00000418543		ChiTaRS3.1			W58317	PRKDC	chr8	48740728	-	WDR83	chr19	12779364	-
5CDS-intron	ENST00000338368	ENST00000242796		ChiTaRS3.1			W58317	PRKDC	chr8	48740728	-	WDR83	chr19	12779364	-
5CDS-5UTR	ENST00000314191	ENST00000418543		ChiTaRS3.1			W58317	PRKDC	chr8	48740728	-	WDR83	chr19	12779364	-
5CDS-intron	ENST00000314191	ENST00000242796		ChiTaRS3.1			W58317	PRKDC	chr8	48740728	-	WDR83	chr19	12779364	-
5UTR-5UTR	ENST00000523565	ENST00000418543		ChiTaRS3.1			W58317	PRKDC	chr8	48740728	-	WDR83	chr19	12779364	-
5UTR-intron	ENST00000523565	ENST00000242796		ChiTaRS3.1			W58317	PRKDC	chr8	48740728	-	WDR83	chr19	12779364	-
5CDS-5UTR	ENST00000320912	ENST00000451562		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000320912	ENST00000468812		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000320912	ENST00000489459		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000320912	ENST00000355968		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-intron	ENST00000320912	ENST00000480603		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000507420	ENST00000451562		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000507420	ENST00000468812		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000507420	ENST00000489459		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000507420	ENST00000355968		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-intron	ENST00000507420	ENST00000480603		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000382581	ENST00000451562		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000382581	ENST00000468812		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000382581	ENST00000489459		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-5UTR	ENST00000382581	ENST00000355968		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
5CDS-intron	ENST00000382581	ENST00000480603		ChiTaRS3.1			BQ721575	MRFAP1	chr4	6642593	+	PPIA	chr7	44836289	+
intron-3CDS	ENST00000307961	ENST00000193403		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000307961	ENST00000394419		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000307961	ENST00000438964		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000307961	ENST00000376839		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000307961	ENST00000538545		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-intron	ENST00000307961	ENST00000554508		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000568588	ENST00000193403		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000568588	ENST00000394419		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000568588	ENST00000438964		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000568588	ENST00000376839		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000568588	ENST00000538545		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-intron	ENST00000568588	ENST00000554508		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000564517	ENST00000193403		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000564517	ENST00000394419		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000564517	ENST00000438964		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000564517	ENST00000376839		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000564517	ENST00000538545		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-intron	ENST00000564517	ENST00000554508		ChiTaRS3.1			DN601711	RPL4	chr15	66794971	-	ACTN1	chr14	69347620	-
intron-3CDS	ENST00000280571	ENST00000313899		ChiTaRS3.1			DA569517	RILPL2	chr12	123907633	-	HNRNPD	chr4	83294626	-
intron-3CDS	ENST00000280571	ENST00000353341		ChiTaRS3.1			DA569517	RILPL2	chr12	123907633	-	HNRNPD	chr4	83294626	-
intron-3CDS	ENST00000280571	ENST00000543098		ChiTaRS3.1			DA569517	RILPL2	chr12	123907633	-	HNRNPD	chr4	83294626	-
intron-3CDS	ENST00000280571	ENST00000352301		ChiTaRS3.1			DA569517	RILPL2	chr12	123907633	-	HNRNPD	chr4	83294626	-
intron-intron	ENST00000280571	ENST00000508119		ChiTaRS3.1			DA569517	RILPL2	chr12	123907633	-	HNRNPD	chr4	83294626	-
intron-5UTR	ENST00000280571	ENST00000541060		ChiTaRS3.1			DA569517	RILPL2	chr12	123907633	-	HNRNPD	chr4	83294626	-
intron-3CDS	ENST00000317216	ENST00000397292		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000317216	ENST00000520884		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-intron	ENST00000317216	ENST00000520641		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000522910	ENST00000397292		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000522910	ENST00000520884		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-intron	ENST00000522910	ENST00000520641		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000519492	ENST00000397292		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000519492	ENST00000520884		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-intron	ENST00000519492	ENST00000520641		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000524088	ENST00000397292		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3CDS	ENST00000524088	ENST00000520884		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-intron	ENST00000524088	ENST00000520641		ChiTaRS3.1			AW270084	EGR3	chr8	22548787	+	PLAA	chr9	26923255	+
intron-3UTR	ENST00000299732	ENST00000264645		ChiTaRS3.1			AI206204	IQCD	chr12	113633420	+	CASC3	chr17	38327709	-
intron-3UTR	ENST00000416617	ENST00000264645		ChiTaRS3.1			AI206204	IQCD	chr12	113633420	+	CASC3	chr17	38327709	-
intron-3UTR	ENST00000546692	ENST00000264645		ChiTaRS3.1			AI206204	IQCD	chr12	113633420	+	CASC3	chr17	38327709	-
In-frame	ENST00000254108	ENST00000303400		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000254108	ENST00000505177		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000254108	ENST00000264750		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000254108	ENST00000452175		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
Frame-shit	ENST00000254108	ENST00000514708		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000254108	ENST00000510794		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000254108	ENST00000505839		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
5CDS-3UTR	ENST00000254108	ENST00000512289		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000380244	ENST00000303400		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000380244	ENST00000505177		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000380244	ENST00000264750		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000380244	ENST00000452175		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
Frame-shit	ENST00000380244	ENST00000514708		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000380244	ENST00000510794		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000380244	ENST00000505839		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
5CDS-3UTR	ENST00000380244	ENST00000512289		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000568685	ENST00000303400		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000568685	ENST00000505177		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000568685	ENST00000264750		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000568685	ENST00000452175		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
Frame-shit	ENST00000568685	ENST00000514708		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000568685	ENST00000510794		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
In-frame	ENST00000568685	ENST00000505839		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
5CDS-3UTR	ENST00000568685	ENST00000512289		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000303400		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000505177		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000264750		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000452175		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000514708		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000510794		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3CDS	ENST00000474990	ENST00000505839		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3UTR	ENST00000474990	ENST00000512289		ChiTaRS3.1			CX872911	FUS	chr16	31196500	+	MAEA	chr4	1326544	+
intron-3UTR	ENST00000334940	ENST00000301764		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000334940	ENST00000450997		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000334940	ENST00000451943		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000334940	ENST00000538470		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000334940	ENST00000545930		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000374417	ENST00000301764		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000374417	ENST00000450997		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000374417	ENST00000451943		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000374417	ENST00000538470		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000374417	ENST00000545930		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000340258	ENST00000301764		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000340258	ENST00000450997		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000340258	ENST00000451943		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000340258	ENST00000538470		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000340258	ENST00000545930		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000472561	ENST00000301764		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000472561	ENST00000450997		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-3UTR	ENST00000472561	ENST00000451943		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000472561	ENST00000538470		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
intron-intron	ENST00000472561	ENST00000545930		ChiTaRS3.1			AA738370	RASSF4	chr10	45472005	+	DDB1	chr11	61067373	+
3UTR-3CDS	ENST00000309092	ENST00000601521		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000309092	ENST00000598098		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000309092	ENST00000598495		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000309092	ENST00000196551		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000309092	ENST00000596046		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000369084	ENST00000601521		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000369084	ENST00000598098		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000369084	ENST00000598495		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000369084	ENST00000196551		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
3UTR-3CDS	ENST00000369084	ENST00000596046		ChiTaRS3.1			BU175700	MRPS21	chr1	150280782	+	RPS5	chr19	58904724	+
intron-intron	ENST00000395648	ENST00000368972		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000395648	ENST00000392644		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000395648	ENST00000481850		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000308212	ENST00000368972		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000308212	ENST00000392644		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000308212	ENST00000481850		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000533940	ENST00000368972		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000533940	ENST00000392644		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000533940	ENST00000481850		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000525680	ENST00000368972		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000525680	ENST00000392644		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000525680	ENST00000481850		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000531130	ENST00000368972		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000531130	ENST00000392644		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000531130	ENST00000481850		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000531928	ENST00000368972		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000531928	ENST00000392644		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-intron	ENST00000531928	ENST00000481850		ChiTaRS3.1			BQ675858	TP53I11	chr11	44955887	-	ARMC2	chr6	109228807	-
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BF095110	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
In-frame	ENST00000262809	ENST00000534358		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
In-frame	ENST00000262809	ENST00000389506		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
In-frame	ENST00000262809	ENST00000354520		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000262809	ENST00000420751		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000596124	ENST00000534358		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000596124	ENST00000389506		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000596124	ENST00000354520		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
intron-intron	ENST00000596124	ENST00000420751		ChiTaRS3.1			DQ437655	ELL	chr19	18632731	-	KMT2A	chr11	118359327	+
3UTR-3CDS	ENST00000360565	ENST00000369041		ChiTaRS3.1			BM677150	SCAF1	chr19	50161828	-	ADAMTSL4	chr1	150529513	-
3UTR-intron	ENST00000360565	ENST00000483335		ChiTaRS3.1			BM677150	SCAF1	chr19	50161828	-	ADAMTSL4	chr1	150529513	-
3UTR-intron	ENST00000360565	ENST00000271643		ChiTaRS3.1			BM677150	SCAF1	chr19	50161828	-	ADAMTSL4	chr1	150529513	-
3UTR-intron	ENST00000360565	ENST00000369039		ChiTaRS3.1			BM677150	SCAF1	chr19	50161828	-	ADAMTSL4	chr1	150529513	-
3UTR-intron	ENST00000360565	ENST00000369038		ChiTaRS3.1			BM677150	SCAF1	chr19	50161828	-	ADAMTSL4	chr1	150529513	-
intron-3UTR	ENST00000400098	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400098	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400098	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400098	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400098	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400098	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400098	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400100	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400100	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400100	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400100	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400100	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400100	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400100	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400097	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400097	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400097	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400097	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400097	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000400097	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000400097	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000553597	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000553597	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000553597	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000553597	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000553597	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000553597	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000553597	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000390687	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000390687	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000390687	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000390687	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000390687	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000390687	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000390687	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000346403	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000346403	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000346403	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000346403	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000346403	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000346403	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000346403	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000554227	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000554227	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000554227	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000554227	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000554227	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000554227	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000554227	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000577565	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000577565	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000577565	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000577565	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000577565	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000577565	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000577565	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000444203	ENST00000283365		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000596745		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000315456		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000598334		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000554864		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000444203	ENST00000399121		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000444203	ENST00000595022		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000444203	ENST00000269190		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000444203	ENST00000399097		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000598774		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000598142		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000348997		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000597599		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000269191		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3UTR	ENST00000444203	ENST00000444659		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000399113		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000601125		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000269192		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000591182		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000597674		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000556414		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000599844		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000590831		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-intron	ENST00000444203	ENST00000592449		ChiTaRS3.1			DA248682	SNRPN	chr15	25486973	+	DTNA	chr18	32468577	+
intron-3CDS	ENST00000376322	ENST00000265087		ChiTaRS3.1			AI086972	PLP2	chrX	49031071	-	STC2	chr5	172752896	+
intron-intron	ENST00000376322	ENST00000520593		ChiTaRS3.1			AI086972	PLP2	chrX	49031071	-	STC2	chr5	172752896	+
3UTR-3CDS	ENST00000376327	ENST00000265087		ChiTaRS3.1			AI086972	PLP2	chrX	49031071	-	STC2	chr5	172752896	+
3UTR-intron	ENST00000376327	ENST00000520593		ChiTaRS3.1			AI086972	PLP2	chrX	49031071	-	STC2	chr5	172752896	+
intron-3CDS	ENST00000422514	ENST00000296543		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000422514	ENST00000398947		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000422514	ENST00000480277		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000422514	ENST00000515576		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000496182	ENST00000296543		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000496182	ENST00000398947		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000496182	ENST00000480277		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000496182	ENST00000515576		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000394938	ENST00000296543		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000394938	ENST00000398947		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000394938	ENST00000480277		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000394938	ENST00000515576		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000472628	ENST00000296543		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-3CDS	ENST00000472628	ENST00000398947		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000472628	ENST00000480277		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-intron	ENST00000472628	ENST00000515576		ChiTaRS3.1			BG623888	RPL23A	chr17	27050502	+	NAA15	chr4	140278552	+
intron-5UTR	ENST00000376954	ENST00000339600		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000376954	ENST00000492822		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000338637	ENST00000339600		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000338637	ENST00000492822		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000334937	ENST00000339600		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000334937	ENST00000492822		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000483520	ENST00000339600		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-5UTR	ENST00000483520	ENST00000492822		ChiTaRS3.1			AF114060	ZNF81	chrX	47765618	-	NDUFA4	chr7	10979759	-
intron-intron	ENST00000263980	ENST00000375820		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000263980	ENST00000543140		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000263980	ENST00000467182		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000490329	ENST00000375820		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000490329	ENST00000543140		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000490329	ENST00000467182		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000545949	ENST00000375820		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000545949	ENST00000543140		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000545949	ENST00000467182		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000374086	ENST00000375820		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000374086	ENST00000543140		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000374086	ENST00000467182		ChiTaRS3.1			AI992338	SLC9A1	chr1	27425417	+	COL4A1	chr13	110861195	+
intron-intron	ENST00000389467	ENST00000558351		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000389467	ENST00000334660		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000389467	ENST00000560397		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000446231	ENST00000558351		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000446231	ENST00000334660		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000446231	ENST00000560397		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000565224	ENST00000558351		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000565224	ENST00000334660		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000565224	ENST00000560397		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000567737	ENST00000558351		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000567737	ENST00000334660		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000567737	ENST00000560397		ChiTaRS3.1			BE615097	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
Frame-shit	ENST00000398645	ENST00000523829		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
Frame-shit	ENST00000398645	ENST00000356838		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
Frame-shit	ENST00000398645	ENST00000377901		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
5CDS-5UTR	ENST00000398645	ENST00000517538		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
Frame-shit	ENST00000529006	ENST00000523829		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
Frame-shit	ENST00000529006	ENST00000356838		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
Frame-shit	ENST00000529006	ENST00000377901		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
5CDS-5UTR	ENST00000529006	ENST00000517538		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
3UTR-3CDS	ENST00000526258	ENST00000523829		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
3UTR-3CDS	ENST00000526258	ENST00000356838		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
3UTR-3CDS	ENST00000526258	ENST00000377901		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
3UTR-5UTR	ENST00000526258	ENST00000517538		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-3CDS	ENST00000308783	ENST00000523829		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-3CDS	ENST00000308783	ENST00000356838		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-3CDS	ENST00000308783	ENST00000377901		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-5UTR	ENST00000308783	ENST00000517538		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-3CDS	ENST00000530342	ENST00000523829		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-3CDS	ENST00000530342	ENST00000356838		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-3CDS	ENST00000530342	ENST00000377901		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
intron-5UTR	ENST00000530342	ENST00000517538		ChiTaRS3.1			DA951606	KDM2A	chr11	66975162	+	TMEM71	chr8	133769541	-
Frame-shit	ENST00000334681	ENST00000272427		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
5CDS-5UTR	ENST00000334681	ENST00000490919		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
5CDS-intron	ENST00000334681	ENST00000410104		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
In-frame	ENST00000396169	ENST00000272427		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
5CDS-5UTR	ENST00000396169	ENST00000490919		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
5CDS-intron	ENST00000396169	ENST00000410104		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
Frame-shit	ENST00000434608	ENST00000272427		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
5CDS-5UTR	ENST00000434608	ENST00000490919		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
5CDS-intron	ENST00000434608	ENST00000410104		ChiTaRS3.1			DA212182	CCK	chr3	42304909	-	EXOC6B	chr2	72562151	-
3UTR-3UTR	ENST00000369583	ENST00000323534		ChiTaRS3.1			AW867808	DUSP5	chr10	112271214	+	RAP2B	chr3	152881930	+
intron-3UTR	ENST00000468749	ENST00000323534		ChiTaRS3.1			AW867808	DUSP5	chr10	112271214	+	RAP2B	chr3	152881930	+
5CDS-3UTR	ENST00000250092	ENST00000357164		ChiTaRS3.1			BQ549982	CD68	chr17	7483267	+	GM2A	chr5	150648146	+
5CDS-3UTR	ENST00000380498	ENST00000357164		ChiTaRS3.1			BQ549982	CD68	chr17	7483267	+	GM2A	chr5	150648146	+
intron-3CDS	ENST00000378609	ENST00000373585		ChiTaRS3.1			BQ228847	GNB1	chr1	1770654	-	DDX50	chr10	70670061	+
intron-intron	ENST00000378609	ENST00000466265		ChiTaRS3.1			BQ228847	GNB1	chr1	1770654	-	DDX50	chr10	70670061	+
intron-3CDS	ENST00000472614	ENST00000373585		ChiTaRS3.1			BQ228847	GNB1	chr1	1770654	-	DDX50	chr10	70670061	+
intron-intron	ENST00000472614	ENST00000466265		ChiTaRS3.1			BQ228847	GNB1	chr1	1770654	-	DDX50	chr10	70670061	+
3UTR-intron	ENST00000273077	ENST00000507810		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
3UTR-intron	ENST00000273077	ENST00000261486		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
intron-intron	ENST00000472650	ENST00000507810		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
intron-intron	ENST00000472650	ENST00000261486		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
intron-intron	ENST00000248451	ENST00000507810		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
intron-intron	ENST00000248451	ENST00000261486		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
3UTR-intron	ENST00000258362	ENST00000507810		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
3UTR-intron	ENST00000258362	ENST00000261486		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
intron-intron	ENST00000436005	ENST00000507810		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
intron-intron	ENST00000436005	ENST00000261486		ChiTaRS3.1			DA278822	PNKD	chr2	219210650	+	EPB41L4A	chr5	111496563	+
Frame-shit	ENST00000288561	ENST00000331369		ChiTaRS3.1			BC040550	UBN2	chr7	138969298	+	FUNDC2P2	chr2	84517806	+
Frame-shit	ENST00000473989	ENST00000331369		ChiTaRS3.1			BC040550	UBN2	chr7	138969298	+	FUNDC2P2	chr2	84517806	+
intron-3UTR	ENST00000557165	ENST00000291503		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
intron-3UTR	ENST00000557165	ENST00000357324		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
intron-intron	ENST00000557165	ENST00000496082		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
5CDS-3UTR	ENST00000389879	ENST00000291503		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
5CDS-3UTR	ENST00000389879	ENST00000357324		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
5CDS-intron	ENST00000389879	ENST00000496082		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
5CDS-3UTR	ENST00000555049	ENST00000291503		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
5CDS-3UTR	ENST00000555049	ENST00000357324		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
5CDS-intron	ENST00000555049	ENST00000496082		ChiTaRS3.1			AF060515	CCNK	chr14	99969981	+	ATP13A1	chr19	19756068	-
intron-3UTR	ENST00000358595	ENST00000262424		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000358595	ENST00000567845		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000358595	ENST00000566431		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000358595	ENST00000564567		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000358595	ENST00000569090		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-3UTR	ENST00000354396	ENST00000262424		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000354396	ENST00000567845		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000354396	ENST00000566431		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000354396	ENST00000564567		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000354396	ENST00000569090		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-3UTR	ENST00000515192	ENST00000262424		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000515192	ENST00000567845		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000515192	ENST00000566431		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000515192	ENST00000564567		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000515192	ENST00000569090		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-3UTR	ENST00000505755	ENST00000262424		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000505755	ENST00000567845		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000505755	ENST00000566431		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000505755	ENST00000564567		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000505755	ENST00000569090		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-3UTR	ENST00000468970	ENST00000262424		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000468970	ENST00000567845		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000468970	ENST00000566431		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000468970	ENST00000564567		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-intron	ENST00000468970	ENST00000569090		ChiTaRS3.1			BM991829	ARNT	chr1	150783004	+	CRISPLD2	chr16	84941953	-
intron-3UTR	ENST00000258733	ENST00000604411		ChiTaRS3.1			AA463344	GPNMB	chr7	23297013	+	TSIX	chrX	73039575	-
intron-3UTR	ENST00000381990	ENST00000604411		ChiTaRS3.1			AA463344	GPNMB	chr7	23297013	+	TSIX	chrX	73039575	-
3UTR-3UTR	ENST00000409458	ENST00000604411		ChiTaRS3.1			AA463344	GPNMB	chr7	23297013	+	TSIX	chrX	73039575	-
intron-3UTR	ENST00000539136	ENST00000604411		ChiTaRS3.1			AA463344	GPNMB	chr7	23297013	+	TSIX	chrX	73039575	-
intron-3UTR	ENST00000453162	ENST00000604411		ChiTaRS3.1			AA463344	GPNMB	chr7	23297013	+	TSIX	chrX	73039575	-
intron-3UTR	ENST00000478451	ENST00000604411		ChiTaRS3.1			AA463344	GPNMB	chr7	23297013	+	TSIX	chrX	73039575	-
intron-3CDS	ENST00000371711	ENST00000216281		ChiTaRS3.1			BU955750	B4GALT5	chr20	48252534	-	HSP90AA1	chr14	102549908	-
intron-3CDS	ENST00000371711	ENST00000334701		ChiTaRS3.1			BU955750	B4GALT5	chr20	48252534	-	HSP90AA1	chr14	102549908	-
intron-3CDS	ENST00000371711	ENST00000441629		ChiTaRS3.1			BU955750	B4GALT5	chr20	48252534	-	HSP90AA1	chr14	102549908	-
intron-intron	ENST00000371711	ENST00000558600		ChiTaRS3.1			BU955750	B4GALT5	chr20	48252534	-	HSP90AA1	chr14	102549908	-
In-frame	ENST00000370859	ENST00000531066		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
In-frame	ENST00000370859	ENST00000355661		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
In-frame	ENST00000370859	ENST00000448080		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5CDS-intron	ENST00000370859	ENST00000532079		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5CDS-5UTR	ENST00000370859	ENST00000332954		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
In-frame	ENST00000370855	ENST00000531066		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
In-frame	ENST00000370855	ENST00000355661		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
In-frame	ENST00000370855	ENST00000448080		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5CDS-intron	ENST00000370855	ENST00000532079		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5CDS-5UTR	ENST00000370855	ENST00000332954		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
intron-3CDS	ENST00000535611	ENST00000531066		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
intron-3CDS	ENST00000535611	ENST00000355661		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
intron-3CDS	ENST00000535611	ENST00000448080		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
intron-intron	ENST00000535611	ENST00000532079		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
intron-5UTR	ENST00000535611	ENST00000332954		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5UTR-3CDS	ENST00000469525	ENST00000531066		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5UTR-3CDS	ENST00000469525	ENST00000355661		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5UTR-3CDS	ENST00000469525	ENST00000448080		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5UTR-intron	ENST00000469525	ENST00000532079		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
5UTR-5UTR	ENST00000469525	ENST00000332954		ChiTaRS3.1			DB455667	SLC44A5	chr1	76007120	-	PLEKHA7	chr11	16812752	-
intron-3UTR	ENST00000446450	ENST00000303210		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000446450	ENST00000436220		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000446450	ENST00000424361		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000446450	ENST00000419828		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000446450	ENST00000427895		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000446450	ENST00000393926		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000446450	ENST00000393924		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000354956	ENST00000303210		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354956	ENST00000436220		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354956	ENST00000424361		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354956	ENST00000419828		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354956	ENST00000427895		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000354956	ENST00000393926		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000354956	ENST00000393924		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000354449	ENST00000303210		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354449	ENST00000436220		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354449	ENST00000424361		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354449	ENST00000419828		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000354449	ENST00000427895		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000354449	ENST00000393926		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000354449	ENST00000393924		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000469654	ENST00000303210		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000469654	ENST00000436220		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000469654	ENST00000424361		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000469654	ENST00000419828		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-intron	ENST00000469654	ENST00000427895		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000469654	ENST00000393926		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-3UTR	ENST00000469654	ENST00000393924		ChiTaRS3.1			AW316925	ATG7	chr3	11471006	-	GNB2	chr7	100276787	-
intron-5UTR	ENST00000539805	ENST00000337198		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000539805	ENST00000347770		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-intron	ENST00000539805	ENST00000522311		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000480436	ENST00000337198		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000480436	ENST00000347770		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-intron	ENST00000480436	ENST00000522311		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000337743	ENST00000337198		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000337743	ENST00000347770		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-intron	ENST00000337743	ENST00000522311		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000544472	ENST00000337198		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-5UTR	ENST00000544472	ENST00000347770		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
intron-intron	ENST00000544472	ENST00000522311		ChiTaRS3.1			DA410167	TASP1	chr20	13527454	-	AZIN1	chr8	103870362	-
5CDS-intron	ENST00000238855	ENST00000216373		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000238855	ENST00000543680		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000238855	ENST00000555794		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000422803	ENST00000216373		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000422803	ENST00000543680		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000422803	ENST00000555794		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000238856	ENST00000216373		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000238856	ENST00000543680		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000238856	ENST00000555794		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000409933	ENST00000216373		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000409933	ENST00000543680		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000409933	ENST00000555794		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000409183	ENST00000216373		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000409183	ENST00000543680		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5CDS-intron	ENST00000409183	ENST00000555794		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
3UTR-intron	ENST00000487769	ENST00000216373		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
3UTR-intron	ENST00000487769	ENST00000543680		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
3UTR-intron	ENST00000487769	ENST00000555794		ChiTaRS3.1			AA824604	AFTPH	chr2	64812615	-	SOS2	chr14	50626081	+
5UTR-3CDS	ENST00000064780	ENST00000319023		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
5UTR-3CDS	ENST00000064780	ENST00000539574		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
5UTR-intron	ENST00000064780	ENST00000530055		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
5UTR-intron	ENST00000064780	ENST00000526039		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
intron-3CDS	ENST00000393580	ENST00000319023		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
intron-3CDS	ENST00000393580	ENST00000539574		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
intron-intron	ENST00000393580	ENST00000530055		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
intron-intron	ENST00000393580	ENST00000526039		ChiTaRS3.1			BU500775	RELT	chr11	73087545	+	NADSYN1	chr11	71189437	+
intron-5UTR	ENST00000419234	ENST00000405237		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000419234	ENST00000312108		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000419234	ENST00000440709		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000419234	ENST00000360719		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000419234	ENST00000457250		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000419234	ENST00000434492		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000419234	ENST00000395650		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000405237		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000312108		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000440709		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000360719		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000457250		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000434492		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000539060	ENST00000395650		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000405237		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000312108		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000440709		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000360719		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000457250		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000434492		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000327551	ENST00000395650		ChiTaRS3.1			DB055888	BRAP	chr12	112123685	-	CPT1B	chr22	51016368	-
intron-5UTR	ENST00000297431	ENST00000260643		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000297431	ENST00000406567		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000297431	ENST00000416802		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-5UTR	ENST00000545943	ENST00000260643		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000545943	ENST00000406567		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000545943	ENST00000416802		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-5UTR	ENST00000447452	ENST00000260643		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000447452	ENST00000406567		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000447452	ENST00000416802		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-5UTR	ENST00000485726	ENST00000260643		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000485726	ENST00000406567		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
intron-intron	ENST00000485726	ENST00000416802		ChiTaRS3.1			DB179712	ORC5	chr7	103770660	-	PREB	chr2	27357510	-
In-frame	ENST00000263645	ENST00000497986		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000263645	ENST00000335514		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000263645	ENST00000468425		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000263645	ENST00000465645		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000492627	ENST00000497986		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000492627	ENST00000335514		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000492627	ENST00000468425		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000492627	ENST00000465645		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000381036	ENST00000497986		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000381036	ENST00000335514		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000381036	ENST00000468425		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000381036	ENST00000465645		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000526072	ENST00000497986		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000526072	ENST00000335514		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000526072	ENST00000468425		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000526072	ENST00000465645		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
intron-3CDS	ENST00000524805	ENST00000497986		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
intron-3CDS	ENST00000524805	ENST00000335514		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
intron-3CDS	ENST00000524805	ENST00000468425		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
intron-3CDS	ENST00000524805	ENST00000465645		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000481687	ENST00000497986		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000481687	ENST00000335514		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000481687	ENST00000468425		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000481687	ENST00000465645		ChiTaRS3.1			AA431916	CD81	chr11	2417885	+	ATPIF1	chr1	28562748	+
In-frame	ENST00000238571	ENST00000392957		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000238571	ENST00000442129		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000238571	ENST00000411471		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
5CDS-3UTR	ENST00000238571	ENST00000476059		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000325680	ENST00000392957		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000325680	ENST00000442129		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000325680	ENST00000411471		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
5CDS-3UTR	ENST00000325680	ENST00000476059		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000552421	ENST00000392957		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000552421	ENST00000442129		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000552421	ENST00000411471		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3UTR	ENST00000552421	ENST00000476059		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000546901	ENST00000392957		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000546901	ENST00000442129		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000546901	ENST00000411471		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3UTR	ENST00000546901	ENST00000476059		ChiTaRS3.1			AX746751	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000326639	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
Frame-shit	ENST00000326639	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5CDS-intron	ENST00000326639	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-3CDS	ENST00000264584	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-3CDS	ENST00000264584	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-intron	ENST00000264584	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
In-frame	ENST00000441387	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
Frame-shit	ENST00000441387	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5CDS-intron	ENST00000441387	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5UTR-3CDS	ENST00000354456	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5UTR-3CDS	ENST00000354456	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5UTR-intron	ENST00000354456	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-3CDS	ENST00000506199	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-3CDS	ENST00000506199	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-intron	ENST00000506199	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
In-frame	ENST00000512292	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
Frame-shit	ENST00000512292	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5CDS-intron	ENST00000512292	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
In-frame	ENST00000394288	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
Frame-shit	ENST00000394288	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5CDS-intron	ENST00000394288	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
In-frame	ENST00000432347	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
Frame-shit	ENST00000432347	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5CDS-intron	ENST00000432347	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
In-frame	ENST00000427266	ENST00000339775		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
Frame-shit	ENST00000427266	ENST00000348354		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
5CDS-intron	ENST00000427266	ENST00000464058		ChiTaRS3.1			BX107631	LARP1B	chr4	129003378	+	BTG3	chr21	18966628	-
intron-3CDS	ENST00000372555	ENST00000248553		ChiTaRS3.1			DA893722	TNNC2	chr20	44453224	-	HSPB1	chr7	75932242	+
intron-intron	ENST00000372555	ENST00000429938		ChiTaRS3.1			DA893722	TNNC2	chr20	44453224	-	HSPB1	chr7	75932242	+
intron-3CDS	ENST00000372557	ENST00000248553		ChiTaRS3.1			DA893722	TNNC2	chr20	44453224	-	HSPB1	chr7	75932242	+
intron-intron	ENST00000372557	ENST00000429938		ChiTaRS3.1			DA893722	TNNC2	chr20	44453224	-	HSPB1	chr7	75932242	+
intron-3UTR	ENST00000418539	ENST00000472232		ChiTaRS3.1			BC073955	BCYRN1	chrX	70753170	+	BAG1	chr9	33253886	-
intron-intron	ENST00000418539	ENST00000467389		ChiTaRS3.1			BC073955	BCYRN1	chrX	70753170	+	BAG1	chr9	33253886	-
intron-intron	ENST00000418539	ENST00000379704		ChiTaRS3.1			BC073955	BCYRN1	chrX	70753170	+	BAG1	chr9	33253886	-
intron-intron	ENST00000407690	ENST00000459639		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407690	ENST00000380276		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407690	ENST00000291552		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407690	ENST00000398137		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407690	ENST00000486519		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407431	ENST00000459639		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407431	ENST00000380276		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407431	ENST00000291552		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407431	ENST00000398137		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407431	ENST00000486519		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407148	ENST00000459639		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407148	ENST00000380276		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407148	ENST00000291552		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407148	ENST00000398137		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000407148	ENST00000486519		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000405938	ENST00000459639		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000405938	ENST00000380276		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000405938	ENST00000291552		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000405938	ENST00000398137		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000405938	ENST00000486519		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000496523	ENST00000459639		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000496523	ENST00000380276		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000496523	ENST00000291552		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000496523	ENST00000398137		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
intron-intron	ENST00000496523	ENST00000486519		ChiTaRS3.1			AI419804	TFIP11	chr22	26890264	-	U2AF1	chr21	44521362	+
3UTR-3CDS	ENST00000299084	ENST00000174618		ChiTaRS3.1			AA974185	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-5UTR	ENST00000299084	ENST00000575374		ChiTaRS3.1			AA974185	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-3UTR	ENST00000299084	ENST00000575394		ChiTaRS3.1			AA974185	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3CDS	ENST00000561205	ENST00000174618		ChiTaRS3.1			AA974185	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-5UTR	ENST00000561205	ENST00000575374		ChiTaRS3.1			AA974185	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3UTR	ENST00000561205	ENST00000575394		ChiTaRS3.1			AA974185	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-3UTR	ENST00000320785	ENST00000401702		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
3UTR-3UTR	ENST00000320785	ENST00000397326		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
3UTR-3UTR	ENST00000320785	ENST00000397328		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
3UTR-3UTR	ENST00000320785	ENST00000359787		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
3UTR-intron	ENST00000320785	ENST00000406324		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
3UTR-intron	ENST00000320785	ENST00000472240		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
intron-3UTR	ENST00000573815	ENST00000401702		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
intron-3UTR	ENST00000573815	ENST00000397326		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
intron-3UTR	ENST00000573815	ENST00000397328		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
intron-3UTR	ENST00000573815	ENST00000359787		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
intron-intron	ENST00000573815	ENST00000406324		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
intron-intron	ENST00000573815	ENST00000472240		ChiTaRS3.1			AJ573178	KIF1C	chr17	4927734	+	MB	chr22	36003126	-
5CDS-5UTR	ENST00000560079	ENST00000373548		ChiTaRS3.1			BU185586	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000373541		ChiTaRS3.1			BU185586	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000490081		ChiTaRS3.1			BU185586	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-5UTR	ENST00000299927	ENST00000373548		ChiTaRS3.1			BU185586	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000373541		ChiTaRS3.1			BU185586	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000490081		ChiTaRS3.1			BU185586	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
intron-intron	ENST00000307961	ENST00000459937		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000307961	ENST00000424142		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000307961	ENST00000393114		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000307961	ENST00000430372		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000307961	ENST00000483029		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000568588	ENST00000459937		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000568588	ENST00000424142		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000568588	ENST00000393114		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000568588	ENST00000430372		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000568588	ENST00000483029		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000564517	ENST00000459937		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000564517	ENST00000424142		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000564517	ENST00000393114		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000564517	ENST00000430372		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
intron-intron	ENST00000564517	ENST00000483029		ChiTaRS3.1			DA300676	RPL4	chr15	66795163	-	C7orf49	chr7	134832839	+
Frame-shit	ENST00000591793	ENST00000397086		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000591793	ENST00000320225		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000591793	ENST00000566458		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000591793	ENST00000566397		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000591793	ENST00000565678		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000591793	ENST00000561718		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000591793	ENST00000568631		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000591793	ENST00000569598		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000591793	ENST00000301730		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000591793	ENST00000567147		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-3CDS	ENST00000588518	ENST00000397086		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-3CDS	ENST00000588518	ENST00000320225		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-3CDS	ENST00000588518	ENST00000566458		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-5UTR	ENST00000588518	ENST00000566397		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-5UTR	ENST00000588518	ENST00000565678		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-5UTR	ENST00000588518	ENST00000561718		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-5UTR	ENST00000588518	ENST00000568631		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-intron	ENST00000588518	ENST00000569598		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-intron	ENST00000588518	ENST00000301730		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-intron	ENST00000588518	ENST00000567147		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000434772	ENST00000397086		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000434772	ENST00000320225		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000434772	ENST00000566458		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000434772	ENST00000566397		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000434772	ENST00000565678		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000434772	ENST00000561718		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000434772	ENST00000568631		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000434772	ENST00000569598		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000434772	ENST00000301730		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000434772	ENST00000567147		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000585552	ENST00000397086		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000585552	ENST00000320225		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
Frame-shit	ENST00000585552	ENST00000566458		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000585552	ENST00000566397		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000585552	ENST00000565678		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000585552	ENST00000561718		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-5UTR	ENST00000585552	ENST00000568631		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000585552	ENST00000569598		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000585552	ENST00000301730		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
5CDS-intron	ENST00000585552	ENST00000567147		ChiTaRS3.1			BM750508	ZNF223	chr19	44564641	+	RNPS1	chr16	2313235	-
intron-5UTR	ENST00000585509	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
intron-5UTR	ENST00000585509	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
intron-5UTR	ENST00000589297	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
intron-5UTR	ENST00000589297	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000591455	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000591455	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000446868	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000446868	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000361101	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000361101	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000589296	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-5UTR	ENST00000589296	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
intron-5UTR	ENST00000586175	ENST00000521861		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
intron-5UTR	ENST00000586175	ENST00000276682		ChiTaRS3.1			XX000007	CYTH1	chr17	76778284	-	EIF3H	chr8	117768037	-
5CDS-intron	ENST00000570308	ENST00000395395		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000340911		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000481550		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000480716		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000375354		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000395395		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000340911		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000481550		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000480716		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000375354		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000395395		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000340911		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000481550		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000480716		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000375354		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000395395		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000340911		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000481550		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000480716		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000375354		ChiTaRS3.1			R48754	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
5CDS-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			Z35296	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029659	-
intron-3CDS	ENST00000355451	ENST00000157600		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000355451	ENST00000535732		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000355451	ENST00000454244		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000355451	ENST00000397386		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000460110	ENST00000157600		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000460110	ENST00000535732		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000460110	ENST00000454244		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
intron-3CDS	ENST00000460110	ENST00000397386		ChiTaRS3.1			AI078102	NUDCD3	chr7	44507828	-	LMCD1	chr3	8590385	-
In-frame	ENST00000331483	ENST00000425019		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000324219		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000350198		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000302217		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000413150		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000347699		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000456652		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
In-frame	ENST00000331483	ENST00000350878		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
5CDS-intron	ENST00000331483	ENST00000498066		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000425019		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000324219		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000350198		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000302217		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000413150		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000347699		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000456652		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000576390	ENST00000350878		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-intron	ENST00000576390	ENST00000498066		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000425019		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000324219		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000350198		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000302217		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000413150		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000347699		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000456652		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
Frame-shit	ENST00000439918	ENST00000350878		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
5CDS-intron	ENST00000439918	ENST00000498066		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000425019		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000324219		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000350198		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000302217		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000413150		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000347699		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000456652		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-3CDS	ENST00000472244	ENST00000350878		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
intron-intron	ENST00000472244	ENST00000498066		ChiTaRS3.1			CN345438	P4HB	chr17	79817057	-	MAP4K4	chr2	102459069	+
3UTR-3UTR	ENST00000369983	ENST00000256682		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000447318		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000541959		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000541967		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-3UTR	ENST00000476019	ENST00000256682		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000447318		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000541959		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000541967		ChiTaRS3.1			H14073	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-3CDS	ENST00000476233	ENST00000406775		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-3CDS	ENST00000476233	ENST00000342771		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-intron	ENST00000476233	ENST00000403018		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-intron	ENST00000476233	ENST00000489774		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-3CDS	ENST00000354667	ENST00000406775		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-3CDS	ENST00000354667	ENST00000342771		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-intron	ENST00000354667	ENST00000403018		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-intron	ENST00000354667	ENST00000489774		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-3CDS	ENST00000356674	ENST00000406775		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-3CDS	ENST00000356674	ENST00000342771		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-intron	ENST00000356674	ENST00000403018		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
intron-intron	ENST00000356674	ENST00000489774		ChiTaRS3.1			CN262853	HNRNPA2B1	chr7	26236493	-	AUTS2	chr7	70236556	+
In-frame	ENST00000449054	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000449054	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000449054	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000449054	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000449054	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000449054	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5CDS-intron	ENST00000449054	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000379238	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000379238	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000379238	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000379238	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000379238	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000379238	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5CDS-intron	ENST00000379238	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000360802	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000360802	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000360802	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000360802	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000360802	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000360802	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5CDS-intron	ENST00000360802	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-3CDS	ENST00000379239	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-3CDS	ENST00000379239	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-3CDS	ENST00000379239	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-3CDS	ENST00000379239	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-3CDS	ENST00000379239	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-3CDS	ENST00000379239	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5UTR-intron	ENST00000379239	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000539807	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000539807	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000539807	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000539807	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000539807	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
In-frame	ENST00000539807	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5CDS-intron	ENST00000539807	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000418786	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000418786	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000418786	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000418786	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000418786	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
Frame-shit	ENST00000418786	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5CDS-intron	ENST00000418786	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379225	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379225	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379225	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379225	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379225	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379225	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-intron	ENST00000379225	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379235	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379235	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379235	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379235	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379235	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000379235	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-intron	ENST00000379235	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000480885	ENST00000536378		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000480885	ENST00000231790		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000480885	ENST00000458205		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000480885	ENST00000539477		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000480885	ENST00000455445		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-3CDS	ENST00000480885	ENST00000435176		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
intron-intron	ENST00000480885	ENST00000492474		ChiTaRS3.1			DA038406	UBAP2	chr9	33998785	-	MLH1	chr3	37067125	+
5CDS-3UTR	ENST00000251595	ENST00000482108		ChiTaRS3.1			R10023	HBA2	chr16	223587	+	PEG10	chr7	94298889	+
5CDS-intron	ENST00000251595	ENST00000488574		ChiTaRS3.1			R10023	HBA2	chr16	223587	+	PEG10	chr7	94298889	+
5CDS-intron	ENST00000251595	ENST00000465184		ChiTaRS3.1			R10023	HBA2	chr16	223587	+	PEG10	chr7	94298889	+
5CDS-3UTR	ENST00000397806	ENST00000482108		ChiTaRS3.1			R10023	HBA2	chr16	223587	+	PEG10	chr7	94298889	+
5CDS-intron	ENST00000397806	ENST00000488574		ChiTaRS3.1			R10023	HBA2	chr16	223587	+	PEG10	chr7	94298889	+
5CDS-intron	ENST00000397806	ENST00000465184		ChiTaRS3.1			R10023	HBA2	chr16	223587	+	PEG10	chr7	94298889	+
intron-intron	ENST00000366610	ENST00000390548		ChiTaRS3.1			BU686452	IRF2BP2	chr1	234742911	+	IGHG1	chr22	22641313	+
intron-intron	ENST00000366609	ENST00000390548		ChiTaRS3.1			BU686452	IRF2BP2	chr1	234742911	+	IGHG1	chr22	22641313	+
intron-intron	ENST00000491430	ENST00000390548		ChiTaRS3.1			BU686452	IRF2BP2	chr1	234742911	+	IGHG1	chr22	22641313	+
intron-3CDS	ENST00000533895	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533895	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533895	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533895	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533895	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000533895	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000424158	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000424158	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000424158	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000424158	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000424158	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000424158	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000532779	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000532779	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000532779	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000532779	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000532779	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000532779	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000399066	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000399066	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000399066	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000399066	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000399066	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000399066	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000446070	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000446070	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000446070	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000446070	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000446070	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000446070	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528331	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528331	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528331	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528331	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528331	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000528331	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000276646	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000276646	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000276646	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000276646	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000276646	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000276646	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528647	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528647	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528647	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528647	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000528647	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000528647	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000440310	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000440310	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000440310	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000440310	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000440310	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000440310	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000433638	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000433638	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000433638	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000433638	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000433638	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000433638	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408908	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408908	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408908	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408908	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408908	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000408908	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408889	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408889	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408889	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408889	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000408889	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000408889	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000422135	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000422135	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000422135	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000422135	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000422135	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000422135	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000419099	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000419099	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000419099	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000419099	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000419099	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000419099	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533065	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533065	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533065	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533065	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533065	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000533065	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533171	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533171	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533171	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533171	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000533171	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000533171	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529175	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529175	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529175	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529175	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529175	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000529175	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529690	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529690	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529690	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529690	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000529690	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000529690	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000527707	ENST00000555209		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000527707	ENST00000359890		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000527707	ENST00000399922		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000527707	ENST00000346528		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-3CDS	ENST00000527707	ENST00000542016		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
intron-intron	ENST00000527707	ENST00000556984		ChiTaRS3.1			BF762412	SYBU	chr8	110653262	-	RBM23	chr14	23371500	-
3UTR-5UTR	ENST00000403681	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
3UTR-5UTR	ENST00000403681	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
3UTR-intron	ENST00000403681	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000541363	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000541363	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000541363	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000393577	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000393577	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000393577	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000393578	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000393578	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000393578	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000425208	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000425208	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000425208	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000536545	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000536545	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000536545	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000354636	ENST00000299300		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-5UTR	ENST00000354636	ENST00000544368		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000354636	ENST00000543146		ChiTaRS3.1			CN431150	HMGA2	chr12	66358676	+	CCT2	chr12	69979251	+
intron-intron	ENST00000285279	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000285279		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000433959		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000545390		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428648		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428097		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000418904		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000454227		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000453256		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000427700		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000471168		ChiTaRS3.1			AW138673	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
Frame-shit	ENST00000326005	ENST00000254480		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5CDS-5UTR	ENST00000326005	ENST00000425518		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
Frame-shit	ENST00000560258	ENST00000254480		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5CDS-5UTR	ENST00000560258	ENST00000425518		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5UTR-3CDS	ENST00000559753	ENST00000254480		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5UTR-5UTR	ENST00000559753	ENST00000425518		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5UTR-3CDS	ENST00000560837	ENST00000254480		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5UTR-5UTR	ENST00000560837	ENST00000425518		ChiTaRS3.1			DA674180	OAZ2	chr15	64995228	-	SMARCC1	chr3	47680272	-
5CDS-5UTR	ENST00000429243	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000429243	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000429243	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000429243	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-intron	ENST00000429243	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549924	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549924	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549924	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549924	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-intron	ENST00000549924	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000551003	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000551003	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000551003	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000551003	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-intron	ENST00000551003	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549068	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549068	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549068	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549068	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-intron	ENST00000549068	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549740	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549740	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549740	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549740	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-intron	ENST00000549740	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000546581	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000546581	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000546581	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000546581	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-intron	ENST00000546581	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549581	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549581	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549581	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000549581	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-intron	ENST00000549581	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000547368	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000547368	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000547368	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000547368	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-intron	ENST00000547368	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000379786	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000379786	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000379786	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-5UTR	ENST00000379786	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
intron-intron	ENST00000379786	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549135	ENST00000439590		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549135	ENST00000311111		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549135	ENST00000584577		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-5UTR	ENST00000549135	ENST00000534490		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
5CDS-intron	ENST00000549135	ENST00000533498		ChiTaRS3.1			AV742653	PRR13	chr12	53837268	+	RPL38	chr17	72199826	+
3UTR-3UTR	ENST00000456318	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000456318	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000456318	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000456318	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000438240	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000438240	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000438240	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000438240	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
intron-3UTR	ENST00000460083	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
intron-3UTR	ENST00000460083	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
intron-3UTR	ENST00000460083	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
intron-3UTR	ENST00000460083	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000430783	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000430783	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000430783	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000430783	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000443489	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000443489	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000443489	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000443489	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000452961	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000452961	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000452961	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000452961	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000296223	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000296223	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000296223	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000296223	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000429568	ENST00000457580		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000429568	ENST00000388793		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000429568	ENST00000432932		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
3UTR-3UTR	ENST00000429568	ENST00000347433		ChiTaRS3.1			AI680578	POLR2H	chr3	184086267	-	SRRT	chr7	100486235	-
In-frame	ENST00000457408	ENST00000373203		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
In-frame	ENST00000457408	ENST00000344849		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
5CDS-intron	ENST00000457408	ENST00000480266		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-3CDS	ENST00000289577	ENST00000373203		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-3CDS	ENST00000289577	ENST00000344849		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-intron	ENST00000289577	ENST00000480266		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-3CDS	ENST00000481238	ENST00000373203		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-3CDS	ENST00000481238	ENST00000344849		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-intron	ENST00000481238	ENST00000480266		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
Frame-shit	ENST00000444131	ENST00000373203		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
Frame-shit	ENST00000444131	ENST00000344849		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
5CDS-intron	ENST00000444131	ENST00000480266		ChiTaRS3.1			AK123738	TMED4	chr7	44620692	-	ENG	chr9	130581112	-
intron-3UTR	ENST00000287490	ENST00000395869		ChiTaRS3.1			AJ346250	COX6A2	chr16	31439402	-	MYL3	chr3	46899557	-
intron-3UTR	ENST00000287490	ENST00000292327		ChiTaRS3.1			AJ346250	COX6A2	chr16	31439402	-	MYL3	chr3	46899557	-
intron-intron	ENST00000453744	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000453744	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000453744	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000453744	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000394801	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000394801	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000394801	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000394801	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000394803	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000394803	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000394803	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000394803	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000394804	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000394804	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000394804	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000394804	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000343106	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000343106	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000343106	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000343106	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000321805	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000321805	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000321805	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000321805	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000350435	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000350435	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000350435	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000350435	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000338145	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000338145	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000338145	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000338145	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000349311	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000349311	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000349311	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000349311	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000504211	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000504211	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000504211	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000504211	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000357194	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000357194	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000357194	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000357194	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000505207	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000505207	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000505207	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000505207	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000507845	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000507845	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000507845	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000507845	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000502404	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000502404	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000502404	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000502404	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-intron	ENST00000513098	ENST00000367534		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-5UTR	ENST00000513098	ENST00000462965		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000513098	ENST00000359856		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
intron-3UTR	ENST00000513098	ENST00000294742		ChiTaRS3.1			BP368716	UBE2D3	chr4	103718036	-	ARPC5	chr1	183596523	-
In-frame	ENST00000254101	ENST00000367669		ChiTaRS3.1			DA824273	PRKAB2	chr1	146638424	-	RFWD2	chr1	176118212	-
In-frame	ENST00000254101	ENST00000308769		ChiTaRS3.1			DA824273	PRKAB2	chr1	146638424	-	RFWD2	chr1	176118212	-
intron-3CDS	ENST00000496858	ENST00000367669		ChiTaRS3.1			DA824273	PRKAB2	chr1	146638424	-	RFWD2	chr1	176118212	-
intron-3CDS	ENST00000496858	ENST00000308769		ChiTaRS3.1			DA824273	PRKAB2	chr1	146638424	-	RFWD2	chr1	176118212	-
In-frame	ENST00000425272	ENST00000367669		ChiTaRS3.1			DA824273	PRKAB2	chr1	146638424	-	RFWD2	chr1	176118212	-
In-frame	ENST00000425272	ENST00000308769		ChiTaRS3.1			DA824273	PRKAB2	chr1	146638424	-	RFWD2	chr1	176118212	-
intron-3UTR	ENST00000340645	ENST00000343245		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000340645	ENST00000369070		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000340645	ENST00000369076		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000340645	ENST00000360666		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-5UTR	ENST00000340645	ENST00000475645		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000343245		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000369070		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000369076		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000360666		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-5UTR	ENST00000393667	ENST00000475645		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000343245		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000369070		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000369076		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000360666		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-5UTR	ENST00000472829	ENST00000475645		ChiTaRS3.1			AW139772	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
3UTR-3CDS	ENST00000309889	ENST00000372538		ChiTaRS3.1			F26420	TCAP	chr17	37822402	+	COMTD1	chr10	76993868	-
3UTR-5UTR	ENST00000309889	ENST00000460899		ChiTaRS3.1			F26420	TCAP	chr17	37822402	+	COMTD1	chr10	76993868	-
3UTR-3CDS	ENST00000578283	ENST00000372538		ChiTaRS3.1			F26420	TCAP	chr17	37822402	+	COMTD1	chr10	76993868	-
3UTR-5UTR	ENST00000578283	ENST00000460899		ChiTaRS3.1			F26420	TCAP	chr17	37822402	+	COMTD1	chr10	76993868	-
intron-3CDS	ENST00000357700	ENST00000554914		ChiTaRS3.1			AU117748	ASB13	chr10	5693186	-	SOX7	chr8	10583514	-
intron-3CDS	ENST00000357700	ENST00000553390		ChiTaRS3.1			AU117748	ASB13	chr10	5693186	-	SOX7	chr8	10583514	-
intron-3CDS	ENST00000357700	ENST00000304501		ChiTaRS3.1			AU117748	ASB13	chr10	5693186	-	SOX7	chr8	10583514	-
intron-3CDS	ENST00000479033	ENST00000554914		ChiTaRS3.1			AU117748	ASB13	chr10	5693186	-	SOX7	chr8	10583514	-
intron-3CDS	ENST00000479033	ENST00000553390		ChiTaRS3.1			AU117748	ASB13	chr10	5693186	-	SOX7	chr8	10583514	-
intron-3CDS	ENST00000479033	ENST00000304501		ChiTaRS3.1			AU117748	ASB13	chr10	5693186	-	SOX7	chr8	10583514	-
intron-3CDS	ENST00000331738	ENST00000282516		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-3CDS	ENST00000331738	ENST00000448238		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-intron	ENST00000331738	ENST00000504430		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-3CDS	ENST00000354654	ENST00000282516		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-3CDS	ENST00000354654	ENST00000448238		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-intron	ENST00000354654	ENST00000504430		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-3CDS	ENST00000392442	ENST00000282516		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-3CDS	ENST00000392442	ENST00000448238		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-intron	ENST00000392442	ENST00000504430		ChiTaRS3.1			AI907228	RSRC2	chr12	123003548	-	NIPBL	chr5	37060997	+
intron-3UTR	ENST00000295702	ENST00000311015		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000295702	ENST00000380870		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000295702	ENST00000597810		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000295702	ENST00000594245		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000529008	ENST00000311015		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000529008	ENST00000380870		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000529008	ENST00000597810		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000529008	ENST00000594245		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000496742	ENST00000311015		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000496742	ENST00000380870		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000496742	ENST00000597810		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000496742	ENST00000594245		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000480567	ENST00000311015		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-3UTR	ENST00000480567	ENST00000380870		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000480567	ENST00000597810		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
intron-intron	ENST00000480567	ENST00000594245		ChiTaRS3.1			CA335796	SSR2	chr1	155979019	-	ZNF738	chr19	21561632	+
5CDS-intron	ENST00000601417	ENST00000254351		ChiTaRS3.1			BG002190	ERVV-2	chr19	53552907	+	SDC1	chr2	20417299	-
5CDS-intron	ENST00000601417	ENST00000381150		ChiTaRS3.1			BG002190	ERVV-2	chr19	53552907	+	SDC1	chr2	20417299	-
5CDS-intron	ENST00000601417	ENST00000403076		ChiTaRS3.1			BG002190	ERVV-2	chr19	53552907	+	SDC1	chr2	20417299	-
5CDS-intron	ENST00000601417	ENST00000482879		ChiTaRS3.1			BG002190	ERVV-2	chr19	53552907	+	SDC1	chr2	20417299	-
3UTR-5UTR	ENST00000351937	ENST00000225992		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
3UTR-intron	ENST00000351937	ENST00000591228		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
3UTR-intron	ENST00000351937	ENST00000587006		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
3UTR-5UTR	ENST00000315073	ENST00000225992		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
3UTR-intron	ENST00000315073	ENST00000591228		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
3UTR-intron	ENST00000315073	ENST00000587006		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
intron-5UTR	ENST00000510072	ENST00000225992		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
intron-intron	ENST00000510072	ENST00000591228		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
intron-intron	ENST00000510072	ENST00000587006		ChiTaRS3.1			BP384232	TRIM41	chr5	180662580	+	PPY	chr17	42019815	-
intron-intron	ENST00000013125	ENST00000338368		ChiTaRS3.1			AU122315	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000013125	ENST00000314191		ChiTaRS3.1			AU122315	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000013125	ENST00000523565		ChiTaRS3.1			AU122315	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000557578	ENST00000338368		ChiTaRS3.1			AU122315	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000557578	ENST00000314191		ChiTaRS3.1			AU122315	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
intron-intron	ENST00000557578	ENST00000523565		ChiTaRS3.1			AU122315	MAP4K5	chr14	50945505	-	PRKDC	chr8	48711771	-
5UTR-3CDS	ENST00000395169	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395169	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395169	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395169	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395169	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395169	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395169	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395169	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000359221	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000359221	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000359221	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000359221	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000359221	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000359221	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000359221	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000359221	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000361569	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000361569	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000361569	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000361569	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000361569	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000361569	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000361569	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000361569	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395166	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395166	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395166	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395166	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395166	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395166	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395166	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395166	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000449047	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000449047	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000449047	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000449047	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000449047	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000449047	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000449047	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000449047	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395161	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395161	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395161	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395161	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000395161	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395161	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395161	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000395161	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000513839	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000513839	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000513839	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000513839	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-3CDS	ENST00000513839	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000513839	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000513839	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
5UTR-intron	ENST00000513839	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395157	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395157	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395157	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395157	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395157	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-intron	ENST00000395157	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-intron	ENST00000395157	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-intron	ENST00000395157	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395160	ENST00000513000		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395160	ENST00000509777		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395160	ENST00000262992		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395160	ENST00000308502		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000395160	ENST00000508116		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-intron	ENST00000395160	ENST00000507861		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-intron	ENST00000395160	ENST00000506217		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-intron	ENST00000395160	ENST00000508084		ChiTaRS3.1			BP360877	MAPK10	chr4	87275682	-	INPP4B	chr4	143067145	-
intron-3CDS	ENST00000408667	ENST00000397752		ChiTaRS3.1			U08818	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-3CDS	ENST00000408667	ENST00000318493		ChiTaRS3.1			U08818	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-intron	ENST00000408667	ENST00000436117		ChiTaRS3.1			U08818	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-intron	ENST00000408667	ENST00000495962		ChiTaRS3.1			U08818	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
intron-intron	ENST00000408667	ENST00000539704		ChiTaRS3.1			U08818	MIR548F1	chr1	186337018	-	MET	chr7	116414931	+
5UTR-3UTR	ENST00000476844	ENST00000482108		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-intron	ENST00000476844	ENST00000488574		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000476844	ENST00000465184		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000492590	ENST00000482108		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-intron	ENST00000492590	ENST00000488574		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000492590	ENST00000465184		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000466788	ENST00000482108		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-intron	ENST00000466788	ENST00000488574		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000466788	ENST00000465184		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000468189	ENST00000482108		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-intron	ENST00000468189	ENST00000488574		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
5UTR-3UTR	ENST00000468189	ENST00000465184		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000341848	ENST00000482108		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-intron	ENST00000341848	ENST00000488574		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-3UTR	ENST00000341848	ENST00000465184		ChiTaRS3.1			DB472103	FHIT	chr3	60807613	-	PEG10	chr7	94298189	+
intron-intron	ENST00000255006	ENST00000331162		ChiTaRS3.1			AW272393	RIN2	chr20	19870209	-	ZNF479	chr7	57199992	+
intron-intron	ENST00000440354	ENST00000331162		ChiTaRS3.1			AW272393	RIN2	chr20	19870209	-	ZNF479	chr7	57199992	+
intron-intron	ENST00000484638	ENST00000331162		ChiTaRS3.1			AW272393	RIN2	chr20	19870209	-	ZNF479	chr7	57199992	+
3UTR-3UTR	ENST00000320954	ENST00000422945		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000556068		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000554442		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-3UTR	ENST00000320954	ENST00000328724		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-3UTR	ENST00000320954	ENST00000350249		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000445439		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-3UTR	ENST00000320954	ENST00000334743		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000557095		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000556260		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000556946		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000557714		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000422945		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000556068		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000554442		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000328724		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000350249		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000445439		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000334743		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000557095		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000556260		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000556946		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000557714		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000422945		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000556068		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000554442		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000328724		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000350249		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000445439		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000334743		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000557095		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000556260		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000556946		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000557714		ChiTaRS3.1			AA410780	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000361731	ENST00000554908		ChiTaRS3.1			BG178962	SFT2D1	chr6	166733610	-	GMFB	chr14	54941330	-
intron-3UTR	ENST00000361731	ENST00000358056		ChiTaRS3.1			BG178962	SFT2D1	chr6	166733610	-	GMFB	chr14	54941330	-
intron-intron	ENST00000361731	ENST00000553566		ChiTaRS3.1			BG178962	SFT2D1	chr6	166733610	-	GMFB	chr14	54941330	-
intron-3UTR	ENST00000487841	ENST00000554908		ChiTaRS3.1			BG178962	SFT2D1	chr6	166733610	-	GMFB	chr14	54941330	-
intron-3UTR	ENST00000487841	ENST00000358056		ChiTaRS3.1			BG178962	SFT2D1	chr6	166733610	-	GMFB	chr14	54941330	-
intron-intron	ENST00000487841	ENST00000553566		ChiTaRS3.1			BG178962	SFT2D1	chr6	166733610	-	GMFB	chr14	54941330	-
3UTR-3CDS	ENST00000534336	ENST00000377869		ChiTaRS3.1			AU141950	MALAT1	chr11	65272022	+	TG	chr8	133978890	+
3UTR-3CDS	ENST00000534336	ENST00000220616		ChiTaRS3.1			AU141950	MALAT1	chr11	65272022	+	TG	chr8	133978890	+
3UTR-3CDS	ENST00000534336	ENST00000542445		ChiTaRS3.1			AU141950	MALAT1	chr11	65272022	+	TG	chr8	133978890	+
3UTR-3CDS	ENST00000534336	ENST00000519543		ChiTaRS3.1			AU141950	MALAT1	chr11	65272022	+	TG	chr8	133978890	+
3UTR-intron	ENST00000534336	ENST00000522523		ChiTaRS3.1			AU141950	MALAT1	chr11	65272022	+	TG	chr8	133978890	+
intron-5UTR	ENST00000359979	ENST00000370584		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
intron-intron	ENST00000359979	ENST00000314594		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
intron-intron	ENST00000359979	ENST00000298999		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
intron-intron	ENST00000359979	ENST00000370586		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-5UTR	ENST00000372088	ENST00000370584		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000372088	ENST00000314594		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000372088	ENST00000298999		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000372088	ENST00000370586		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-5UTR	ENST00000224756	ENST00000370584		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000224756	ENST00000314594		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000224756	ENST00000298999		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000224756	ENST00000370586		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
3UTR-5UTR	ENST00000494144	ENST00000370584		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
3UTR-intron	ENST00000494144	ENST00000314594		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
3UTR-intron	ENST00000494144	ENST00000298999		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
3UTR-intron	ENST00000494144	ENST00000370586		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-5UTR	ENST00000543283	ENST00000370584		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000543283	ENST00000314594		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000543283	ENST00000298999		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
5CDS-intron	ENST00000543283	ENST00000370586		ChiTaRS3.1			DA129648	CCSER2	chr10	86237420	+	R3HCC1L	chr10	99946224	+
3UTR-3CDS	ENST00000336452	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000336452	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000336458	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000336458	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000576930	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000576930	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
intron-3CDS	ENST00000572815	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
intron-3CDS	ENST00000572815	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000573542	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000573542	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000419711	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000419711	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000571955	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000571955	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000416016	ENST00000248929		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
3UTR-3CDS	ENST00000416016	ENST00000454798		ChiTaRS3.1			CN336887	EIF5A	chr17	7215318	+	SGSM3	chr22	40800416	+
Frame-shit	ENST00000354725	ENST00000356805		ChiTaRS3.1			BF081959	SND1	chr7	127724896	+	SPTBN1	chr2	54886326	+
Frame-shit	ENST00000354725	ENST00000333896		ChiTaRS3.1			BF081959	SND1	chr7	127724896	+	SPTBN1	chr2	54886326	+
intron-3CDS	ENST00000467238	ENST00000356805		ChiTaRS3.1			BF081959	SND1	chr7	127724896	+	SPTBN1	chr2	54886326	+
intron-3CDS	ENST00000467238	ENST00000333896		ChiTaRS3.1			BF081959	SND1	chr7	127724896	+	SPTBN1	chr2	54886326	+
5CDS-3UTR	ENST00000344771	ENST00000393892		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000344771	ENST00000472031		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000344771	ENST00000591072		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000344771	ENST00000592446		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000344771	ENST00000393888		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-3UTR	ENST00000395059	ENST00000393892		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000395059	ENST00000472031		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000395059	ENST00000591072		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000395059	ENST00000592446		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000395059	ENST00000393888		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-3UTR	ENST00000262518	ENST00000393892		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000262518	ENST00000472031		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000262518	ENST00000591072		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000262518	ENST00000592446		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
5CDS-intron	ENST00000262518	ENST00000393888		ChiTaRS3.1			BC032780	SRCAP	chr16	30724991	+	CNP	chr17	40128747	-
intron-intron	ENST00000513615	ENST00000373129		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000513615	ENST00000373130		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000513615	ENST00000373132		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000513615	ENST00000482458		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000513615	ENST00000359297		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000281243	ENST00000373129		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000281243	ENST00000373130		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000281243	ENST00000373132		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000281243	ENST00000482458		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000281243	ENST00000359297		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000428702	ENST00000373129		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000428702	ENST00000373130		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000428702	ENST00000373132		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000428702	ENST00000482458		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000428702	ENST00000359297		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000508623	ENST00000373129		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000508623	ENST00000373130		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000508623	ENST00000373132		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000508623	ENST00000482458		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-intron	ENST00000508623	ENST00000359297		ChiTaRS3.1			BF964008	QDPR	chr4	17488679	-	STK40	chr1	36831993	-
intron-5UTR	ENST00000608655	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608655	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608655	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608655	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608655	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608704	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608704	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608704	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608704	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608704	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000299402	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000299402	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000299402	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000299402	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000299402	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609360	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609360	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609360	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609360	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609360	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000389906	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000389906	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000389906	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000389906	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000389906	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000311051	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000311051	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000311051	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000311051	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000311051	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608394	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608394	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608394	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608394	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608394	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000529519	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000529519	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000529519	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000529519	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000529519	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608645	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608645	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608645	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608645	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000608645	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609331	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609331	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609331	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609331	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000609331	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000530885	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000530885	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000530885	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000530885	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000530885	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000526240	ENST00000536769		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000526240	ENST00000538617		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000526240	ENST00000546120		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000526240	ENST00000339647		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
intron-5UTR	ENST00000526240	ENST00000536661		ChiTaRS3.1			BY796539	APBB1	chr11	6424599	-	UBC	chr12	125399185	-
In-frame	ENST00000361727	ENST00000357154		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
In-frame	ENST00000361727	ENST00000357545		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
In-frame	ENST00000361727	ENST00000504953		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
In-frame	ENST00000361727	ENST00000511531		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
In-frame	ENST00000361727	ENST00000506886		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000507137		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000510741		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000502330		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000541354		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000512681		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000511269		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000535728		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000421836		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000534949		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000541637		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
5CDS-5UTR	ENST00000361727	ENST00000512648		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000538075	ENST00000357154		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000538075	ENST00000357545		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000538075	ENST00000504953		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000538075	ENST00000511531		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000538075	ENST00000506886		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000507137		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000510741		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000502330		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000541354		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000512681		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000511269		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000535728		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000421836		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000534949		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000541637		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000538075	ENST00000512648		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000463592	ENST00000357154		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000463592	ENST00000357545		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000463592	ENST00000504953		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000463592	ENST00000511531		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-3CDS	ENST00000463592	ENST00000506886		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000507137		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000510741		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000502330		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000541354		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000512681		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000511269		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000535728		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000421836		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000534949		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000541637		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
intron-5UTR	ENST00000463592	ENST00000512648		ChiTaRS3.1			DA286801	CNTNAP2	chr7	147336399	+	SPOCK3	chr4	167675882	-
Frame-shit	ENST00000339307	ENST00000379565		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-5UTR	ENST00000339307	ENST00000544447		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-intron	ENST00000339307	ENST00000379548		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-5UTR	ENST00000339307	ENST00000540702		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-intron	ENST00000339307	ENST00000479809		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
Frame-shit	ENST00000397033	ENST00000379565		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-5UTR	ENST00000397033	ENST00000544447		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-intron	ENST00000397033	ENST00000379548		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-5UTR	ENST00000397033	ENST00000540702		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
5CDS-intron	ENST00000397033	ENST00000479809		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
3UTR-3CDS	ENST00000478440	ENST00000379565		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
3UTR-5UTR	ENST00000478440	ENST00000544447		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
3UTR-intron	ENST00000478440	ENST00000379548		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
3UTR-5UTR	ENST00000478440	ENST00000540702		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
3UTR-intron	ENST00000478440	ENST00000479809		ChiTaRS3.1			DA592743	ITGA4	chr2	182323044	+	RPS6KA3	chrX	20252933	-
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ100456	ETV6	chr12	12032960	+	RUNX1	chr21	36308426	-
5CDS-3UTR	ENST00000352645	ENST00000553116		ChiTaRS3.1			AI671517	ZC3H7B	chr22	41716718	+	RAB5B	chr12	56387938	+
5CDS-3UTR	ENST00000352645	ENST00000360299		ChiTaRS3.1			AI671517	ZC3H7B	chr22	41716718	+	RAB5B	chr12	56387938	+
5CDS-intron	ENST00000352645	ENST00000448789		ChiTaRS3.1			AI671517	ZC3H7B	chr22	41716718	+	RAB5B	chr12	56387938	+
5CDS-3UTR	ENST00000351589	ENST00000553116		ChiTaRS3.1			AI671517	ZC3H7B	chr22	41716718	+	RAB5B	chr12	56387938	+
5CDS-3UTR	ENST00000351589	ENST00000360299		ChiTaRS3.1			AI671517	ZC3H7B	chr22	41716718	+	RAB5B	chr12	56387938	+
5CDS-intron	ENST00000351589	ENST00000448789		ChiTaRS3.1			AI671517	ZC3H7B	chr22	41716718	+	RAB5B	chr12	56387938	+
3UTR-intron	ENST00000370396	ENST00000261406		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
3UTR-intron	ENST00000370396	ENST00000546220		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
intron-intron	ENST00000542741	ENST00000261406		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
intron-intron	ENST00000542741	ENST00000546220		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
intron-intron	ENST00000543350	ENST00000261406		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
intron-intron	ENST00000543350	ENST00000546220		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
3UTR-intron	ENST00000306167	ENST00000261406		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
3UTR-intron	ENST00000306167	ENST00000546220		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
intron-intron	ENST00000413012	ENST00000261406		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
intron-intron	ENST00000413012	ENST00000546220		ChiTaRS3.1			AU125262	MTM1	chrX	149840410	+	EMG1	chr12	7125842	-
In-frame	ENST00000225719	ENST00000378670		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
In-frame	ENST00000225719	ENST00000378667		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
5CDS-intron	ENST00000225719	ENST00000496429		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
5CDS-intron	ENST00000225719	ENST00000378665		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-3CDS	ENST00000543464	ENST00000378670		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-3CDS	ENST00000543464	ENST00000378667		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-intron	ENST00000543464	ENST00000496429		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-intron	ENST00000543464	ENST00000378665		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-3CDS	ENST00000584051	ENST00000378670		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-3CDS	ENST00000584051	ENST00000378667		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-intron	ENST00000584051	ENST00000496429		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
intron-intron	ENST00000584051	ENST00000378665		ChiTaRS3.1			AI825854	CPD	chr17	28706574	+	UQCRQ	chr5	132202579	+
Frame-shit	ENST00000346169	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000378300		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000378292		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000329305		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000360958		ChiTaRS3.1			AW859452	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
intron-3UTR	ENST00000393792	ENST00000204549		ChiTaRS3.1			BF383106	UBTD2	chr5	171638866	-	PDCD7	chr15	65410189	-
intron-intron	ENST00000330430	ENST00000396153		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000371778		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000545823		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000472808		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000396153		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000371778		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000545823		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000472808		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000396153		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000371778		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000545823		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000472808		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000396153		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000371778		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000545823		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000472808		ChiTaRS3.1			BF957327	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
5UTR-3CDS	ENST00000369472	ENST00000337147		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000369472	ENST00000367075		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000369472	ENST00000392177		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-intron	ENST00000369472	ENST00000476189		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000337147		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000367075		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000392177		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-intron	ENST00000336032	ENST00000476189		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000337147		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000367075		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000392177		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-intron	ENST00000354922	ENST00000476189		ChiTaRS3.1			BM762912	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
In-frame	ENST00000356524	ENST00000261195		ChiTaRS3.1			BC070311	SAA1	chr11	18291274	+	GYS2	chr12	21690037	-
Frame-shit	ENST00000532858	ENST00000261195		ChiTaRS3.1			BC070311	SAA1	chr11	18291274	+	GYS2	chr12	21690037	-
In-frame	ENST00000405158	ENST00000261195		ChiTaRS3.1			BC070311	SAA1	chr11	18291274	+	GYS2	chr12	21690037	-
intron-5UTR	ENST00000412585	ENST00000540468		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000412585	ENST00000539919		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000412585	ENST00000258091		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000412585	ENST00000398422		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000412585	ENST00000537131		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000412585	ENST00000538797		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-intron	ENST00000412585	ENST00000473786		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000425848	ENST00000540468		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000425848	ENST00000539919		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000425848	ENST00000258091		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000425848	ENST00000398422		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000425848	ENST00000537131		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000425848	ENST00000538797		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-intron	ENST00000425848	ENST00000473786		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000450871	ENST00000540468		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000450871	ENST00000539919		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000450871	ENST00000258091		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000450871	ENST00000398422		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000450871	ENST00000537131		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000450871	ENST00000538797		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-intron	ENST00000450871	ENST00000473786		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000359635	ENST00000540468		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000359635	ENST00000539919		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000359635	ENST00000258091		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000359635	ENST00000398422		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000359635	ENST00000537131		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000359635	ENST00000538797		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-intron	ENST00000359635	ENST00000473786		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000435618	ENST00000540468		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000435618	ENST00000539919		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000435618	ENST00000258091		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000435618	ENST00000398422		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000435618	ENST00000537131		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000435618	ENST00000538797		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-intron	ENST00000435618	ENST00000473786		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000421349	ENST00000540468		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000421349	ENST00000539919		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000421349	ENST00000258091		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000421349	ENST00000398422		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000421349	ENST00000537131		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-5UTR	ENST00000421349	ENST00000538797		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
intron-intron	ENST00000421349	ENST00000473786		ChiTaRS3.1			BF818027	HLA-B	chr6	2628575	-	CCT7	chr2	73461456	+
5CDS-intron	ENST00000371714	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000371714	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000371714	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-5UTR	ENST00000371714	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000371710	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000371710	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000371710	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-5UTR	ENST00000371710	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000337809	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000337809	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000337809	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-5UTR	ENST00000337809	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000435686	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000435686	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000435686	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000435686	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000447887	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000447887	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000447887	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-5UTR	ENST00000447887	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000453295	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000453295	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000453295	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-5UTR	ENST00000453295	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000428468	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000428468	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-intron	ENST00000428468	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
5CDS-5UTR	ENST00000428468	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000530544	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000530544	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000530544	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000530544	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000531828	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000531828	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000531828	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000531828	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000361556	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000361556	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000361556	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000361556	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000473207	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000473207	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000473207	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000473207	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000462759	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000462759	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000462759	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000462759	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000486942	ENST00000354664		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000486942	ENST00000339023		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-intron	ENST00000486942	ENST00000519532		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
intron-5UTR	ENST00000486942	ENST00000537432		ChiTaRS3.1			BQ349500	OSBPL9	chr1	52135158	+	TBC1D3	chr17	36353716	-
Frame-shit	ENST00000264381	ENST00000398004		ChiTaRS3.1			BP379106	BCHE	chr3	165490697	-	SLC35E3	chr12	69140400	+
5CDS-intron	ENST00000264381	ENST00000538043		ChiTaRS3.1			BP379106	BCHE	chr3	165490697	-	SLC35E3	chr12	69140400	+
intron-3CDS	ENST00000540653	ENST00000398004		ChiTaRS3.1			BP379106	BCHE	chr3	165490697	-	SLC35E3	chr12	69140400	+
intron-intron	ENST00000540653	ENST00000538043		ChiTaRS3.1			BP379106	BCHE	chr3	165490697	-	SLC35E3	chr12	69140400	+
5CDS-3UTR	ENST00000359546	ENST00000285208		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000359546	ENST00000543906		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000359546	ENST00000469959		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000359546	ENST00000486858		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-3UTR	ENST00000506642	ENST00000285208		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-3UTR	ENST00000506642	ENST00000543906		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-intron	ENST00000506642	ENST00000469959		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-intron	ENST00000506642	ENST00000486858		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000393745	ENST00000285208		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000393745	ENST00000543906		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000393745	ENST00000469959		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000393745	ENST00000486858		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000512824	ENST00000285208		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000512824	ENST00000543906		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000512824	ENST00000469959		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000512824	ENST00000486858		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000515094	ENST00000285208		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-3UTR	ENST00000515094	ENST00000543906		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000515094	ENST00000469959		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
5CDS-intron	ENST00000515094	ENST00000486858		ChiTaRS3.1			BP211536	CPLX2	chr5	175306010	+	RAB6B	chr3	133543768	-
intron-3CDS	ENST00000245907	ENST00000510377		ChiTaRS3.1			AI372004	C3	chr19	6677920	+	USP38	chr4	144106895	-
intron-3CDS	ENST00000245907	ENST00000307017		ChiTaRS3.1			AI372004	C3	chr19	6677920	+	USP38	chr4	144106895	-
intron-3CDS	ENST00000599668	ENST00000510377		ChiTaRS3.1			AI372004	C3	chr19	6677920	+	USP38	chr4	144106895	-
intron-3CDS	ENST00000599668	ENST00000307017		ChiTaRS3.1			AI372004	C3	chr19	6677920	+	USP38	chr4	144106895	-
3UTR-intron	ENST00000412278	ENST00000452154		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000412278	ENST00000414788		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000412278	ENST00000430150		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000412278	ENST00000452021		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000412278	ENST00000412319		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000412278	ENST00000416841		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000412278	ENST00000509613		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000452154		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000414788		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000430150		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000452021		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000412319		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000416841		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
intron-intron	ENST00000511114	ENST00000509613		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000452154		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000414788		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000430150		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000452021		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000412319		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000416841		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
3UTR-intron	ENST00000500635	ENST00000509613		ChiTaRS3.1			AV705851	RBM14-RBM4	chr11	66413720	+	FAM156B	chrX	52976829	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM491363	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM491363	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM491363	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
3UTR-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM491363	BCR	chr22	23654023	+	ABL1	chr9	133729451	+
Frame-shit	ENST00000358465	ENST00000400256		ChiTaRS3.1			CN397882	TRIM33	chr1	115053172	-	COLEC12	chr18	480759	-
Frame-shit	ENST00000369543	ENST00000400256		ChiTaRS3.1			CN397882	TRIM33	chr1	115053172	-	COLEC12	chr18	480759	-
intron-3CDS	ENST00000450349	ENST00000400256		ChiTaRS3.1			CN397882	TRIM33	chr1	115053172	-	COLEC12	chr18	480759	-
intron-3CDS	ENST00000476908	ENST00000400256		ChiTaRS3.1			CN397882	TRIM33	chr1	115053172	-	COLEC12	chr18	480759	-
3UTR-3CDS	ENST00000397195	ENST00000396029		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
3UTR-3CDS	ENST00000397195	ENST00000396032		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
3UTR-3CDS	ENST00000397195	ENST00000371602		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
3UTR-3CDS	ENST00000397195	ENST00000349014		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000572915	ENST00000396029		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000572915	ENST00000396032		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000572915	ENST00000371602		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000572915	ENST00000349014		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000451360	ENST00000396029		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000451360	ENST00000396032		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000451360	ENST00000371602		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
intron-3CDS	ENST00000451360	ENST00000349014		ChiTaRS3.1			L25107	PAFAH1B1	chr17	2585537	+	ADNP	chr20	49508633	-
In-frame	ENST00000378402	ENST00000545844		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000567887		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000372915		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000361689		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000539005		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000317713		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000564288		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
In-frame	ENST00000378402	ENST00000289893		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
5CDS-intron	ENST00000378402	ENST00000536367		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
5CDS-intron	ENST00000378402	ENST00000484793		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
5CDS-intron	ENST00000378402	ENST00000602421		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
5CDS-intron	ENST00000378402	ENST00000476350		ChiTaRS3.1			AK128617	PKHD1L1	chr8	110437462	+	MACF1	chr1	39924756	+
Frame-shit	ENST00000303688	ENST00000340353		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000303688	ENST00000532959		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000303688	ENST00000305494		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000303688	ENST00000535167		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
5CDS-intron	ENST00000303688	ENST00000355734		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000340353		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000532959		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000305494		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000535167		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
5CDS-intron	ENST00000383794	ENST00000355734		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000340353		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000532959		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000305494		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000535167		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-intron	ENST00000476763	ENST00000355734		ChiTaRS3.1			BC012553	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
5CDS-intron	ENST00000359611	ENST00000316292		ChiTaRS3.1			DB120764	HIST1H2AM	chr6	27860480	-	EEF1A1	chr6	74230756	-
5CDS-intron	ENST00000359611	ENST00000491404		ChiTaRS3.1			DB120764	HIST1H2AM	chr6	27860480	-	EEF1A1	chr6	74230756	-
5CDS-5UTR	ENST00000359611	ENST00000309268		ChiTaRS3.1			DB120764	HIST1H2AM	chr6	27860480	-	EEF1A1	chr6	74230756	-
5CDS-intron	ENST00000359611	ENST00000331523		ChiTaRS3.1			DB120764	HIST1H2AM	chr6	27860480	-	EEF1A1	chr6	74230756	-
intron-3CDS	ENST00000429845	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000275262		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000392127		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000453779		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000361752		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000361195		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000424802		ChiTaRS3.1			AF142417	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000301071	ENST00000244227		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000301071	ENST00000409116		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000301071	ENST00000488986		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000295766	ENST00000244227		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000295766	ENST00000409116		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000295766	ENST00000488986		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000550767	ENST00000244227		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000550767	ENST00000409116		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000550767	ENST00000488986		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000546918	ENST00000244227		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000546918	ENST00000409116		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000546918	ENST00000488986		ChiTaRS3.1			AI198453	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000405546	ENST00000372045		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000405546	ENST00000218054		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000405546	ENST00000434224		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000405546	ENST00000394797		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000405546	ENST00000372042		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000405546	ENST00000482160		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000405546	ENST00000444321		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000372045		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000218054		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000434224		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000394797		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000372042		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000482160		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000402096	ENST00000444321		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000372045		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000218054		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000434224		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000394797		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000372042		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000482160		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000404914	ENST00000444321		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000372045		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000218054		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000434224		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000394797		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000372042		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000482160		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000491867	ENST00000444321		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000372045		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000218054		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000434224		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000394797		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000372042		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000482160		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000396411	ENST00000444321		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000372045		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000218054		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000434224		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000394797		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000372042		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000482160		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
intron-3CDS	ENST00000474739	ENST00000444321		ChiTaRS3.1			BE768324	ATG4B	chr2	242610929	+	CHRDL1	chrX	109924761	-
In-frame	ENST00000377604	ENST00000359154		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
In-frame	ENST00000377604	ENST00000448661		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-intron	ENST00000377604	ENST00000569174		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-intron	ENST00000377604	ENST00000356003		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000377604	ENST00000544162		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000377604	ENST00000542271		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000377604	ENST00000568684		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
In-frame	ENST00000329236	ENST00000359154		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
In-frame	ENST00000329236	ENST00000448661		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-intron	ENST00000329236	ENST00000569174		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-intron	ENST00000329236	ENST00000356003		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000329236	ENST00000544162		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000329236	ENST00000542271		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000329236	ENST00000568684		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
In-frame	ENST00000345781	ENST00000359154		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
In-frame	ENST00000345781	ENST00000448661		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-intron	ENST00000345781	ENST00000569174		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-intron	ENST00000345781	ENST00000356003		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000345781	ENST00000544162		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000345781	ENST00000542271		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
5CDS-3UTR	ENST00000345781	ENST00000568684		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-3CDS	ENST00000478410	ENST00000359154		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-3CDS	ENST00000478410	ENST00000448661		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-intron	ENST00000478410	ENST00000569174		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-intron	ENST00000478410	ENST00000356003		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-3UTR	ENST00000478410	ENST00000544162		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-3UTR	ENST00000478410	ENST00000542271		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-3UTR	ENST00000478410	ENST00000568684		ChiTaRS3.1			DA936538	RBM10	chrX	47006897	+	WWP2	chr16	69967872	+
intron-intron	ENST00000286175	ENST00000298310		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000286175	ENST00000382135		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000286175	ENST00000545773		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000286175	ENST00000556925		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000286175	ENST00000546046		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000286175	ENST00000556672		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000392283	ENST00000298310		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000392283	ENST00000382135		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000392283	ENST00000545773		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000392283	ENST00000556925		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000392283	ENST00000546046		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000392283	ENST00000556672		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000465823	ENST00000298310		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000465823	ENST00000382135		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000465823	ENST00000545773		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000465823	ENST00000556925		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000465823	ENST00000546046		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000465823	ENST00000556672		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409361	ENST00000298310		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409361	ENST00000382135		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409361	ENST00000545773		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409361	ENST00000556925		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409361	ENST00000546046		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409361	ENST00000556672		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409449	ENST00000298310		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409449	ENST00000382135		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409449	ENST00000545773		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409449	ENST00000556925		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409449	ENST00000546046		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
intron-intron	ENST00000409449	ENST00000556672		ChiTaRS3.1			AK027315	PPIL3	chr2	201736043	-	NEMF	chr14	50065705	+
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			HW088349	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			HW088349	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			HW088349	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			HW088349	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
In-frame	ENST00000504570	ENST00000368508		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
In-frame	ENST00000504570	ENST00000368507		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
In-frame	ENST00000382051	ENST00000368508		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
In-frame	ENST00000382051	ENST00000368507		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
In-frame	ENST00000503434	ENST00000368508		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
In-frame	ENST00000503434	ENST00000368507		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
intron-3CDS	ENST00000510033	ENST00000368508		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
intron-3CDS	ENST00000510033	ENST00000368507		ChiTaRS3.1			EU236947	SLC34A2	chr4	25665952	+	ROS1	chr6	117645580	-
intron-5UTR	ENST00000225964	ENST00000380320		ChiTaRS3.1			CN342202	COL1A1	chr17	48278813	-	EMILIN1	chr2	27301838	+
5CDS-intron	ENST00000281871	ENST00000381086		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000281871	ENST00000275521		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000281871	ENST00000381083		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000281871	ENST00000465642		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000409255	ENST00000381086		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000409255	ENST00000275521		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000409255	ENST00000381083		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
5CDS-intron	ENST00000409255	ENST00000465642		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
intron-intron	ENST00000491178	ENST00000381086		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
intron-intron	ENST00000491178	ENST00000275521		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
intron-intron	ENST00000491178	ENST00000381083		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
intron-intron	ENST00000491178	ENST00000465642		ChiTaRS3.1			BU753901	MZT2B	chr2	130948058	-	IGFBP3	chr7	45960457	+
intron-3CDS	ENST00000431635	ENST00000295897		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-3CDS	ENST00000431635	ENST00000415165		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000431635	ENST00000503124		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000431635	ENST00000509063		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000431635	ENST00000401494		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-intron	ENST00000431635	ENST00000505649		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-3CDS	ENST00000236051	ENST00000295897		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-3CDS	ENST00000236051	ENST00000415165		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000236051	ENST00000503124		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000236051	ENST00000509063		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000236051	ENST00000401494		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-intron	ENST00000236051	ENST00000505649		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-3CDS	ENST00000472982	ENST00000295897		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-3CDS	ENST00000472982	ENST00000415165		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000472982	ENST00000503124		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000472982	ENST00000509063		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-5UTR	ENST00000472982	ENST00000401494		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-intron	ENST00000472982	ENST00000505649		ChiTaRS3.1			DA643030	EBNA1BP2	chr1	43680937	-	ALB	chr4	74270084	+
intron-intron	ENST00000485972	ENST00000522243		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000422546		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000260130		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000447182		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000413219		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000424270		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000523483		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000520168		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000485972	ENST00000447267		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000522243		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000422546		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000260130		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000447182		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000413219		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000424270		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000523483		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000520168		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-intron	ENST00000297518	ENST00000447267		ChiTaRS3.1			W47044	CDK5	chr7	150753678	-	SDCBP	chr8	59481393	+
intron-3CDS	ENST00000290130	ENST00000318911		ChiTaRS3.1			BC033076	MIS18A	chr21	33642030	-	CYC1	chr8	145151031	+
intron-3CDS	ENST00000486363	ENST00000318911		ChiTaRS3.1			BC033076	MIS18A	chr21	33642030	-	CYC1	chr8	145151031	+
3UTR-3UTR	ENST00000405636	ENST00000005259		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000405636	ENST00000465919		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000405636	ENST00000494086		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000405636	ENST00000445771		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000405636	ENST00000379117		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000405636	ENST00000379119		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000405636	ENST00000379121		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000252487	ENST00000005259		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000252487	ENST00000465919		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000252487	ENST00000494086		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000252487	ENST00000445771		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000252487	ENST00000379117		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000252487	ENST00000379119		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000252487	ENST00000379121		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000592434	ENST00000005259		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000592434	ENST00000465919		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000592434	ENST00000494086		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000592434	ENST00000445771		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000592434	ENST00000379117		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-3UTR	ENST00000592434	ENST00000379119		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
3UTR-intron	ENST00000592434	ENST00000379121		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-3UTR	ENST00000426677	ENST00000005259		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-intron	ENST00000426677	ENST00000465919		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-intron	ENST00000426677	ENST00000494086		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-intron	ENST00000426677	ENST00000445771		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-3UTR	ENST00000426677	ENST00000379117		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-3UTR	ENST00000426677	ENST00000379119		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-intron	ENST00000426677	ENST00000379121		ChiTaRS3.1			BE908928	TOMM40	chr19	45406913	+	BCAP29	chr7	107259848	+
intron-intron	ENST00000471014	ENST00000334121		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000471014	ENST00000380918		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000471014	ENST00000284041		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000405570	ENST00000334121		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000405570	ENST00000380918		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000405570	ENST00000284041		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000396183	ENST00000334121		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000396183	ENST00000380918		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000396183	ENST00000284041		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000349496	ENST00000334121		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000349496	ENST00000380918		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000349496	ENST00000284041		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000453024	ENST00000334121		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000453024	ENST00000380918		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
intron-intron	ENST00000453024	ENST00000284041		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000396185	ENST00000334121		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000396185	ENST00000380918		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
3UTR-intron	ENST00000396185	ENST00000284041		ChiTaRS3.1			BE177332	CTNNB1	chr3	41281426	+	SREK1	chr5	65452064	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AY043457	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AY043457	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AY043457	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AY043457	BCR	chr22	23631811	+	ABL1	chr9	133730186	+
intron-5UTR	ENST00000561062	ENST00000371989		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-5UTR	ENST00000561062	ENST00000485435		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000561062	ENST00000545297		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000561062	ENST00000467910		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000561062	ENST00000371991		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-5UTR	ENST00000358583	ENST00000371989		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-5UTR	ENST00000358583	ENST00000485435		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000358583	ENST00000545297		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000358583	ENST00000467910		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000358583	ENST00000371991		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-5UTR	ENST00000300515	ENST00000371989		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-5UTR	ENST00000300515	ENST00000485435		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000300515	ENST00000545297		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000300515	ENST00000467910		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
intron-intron	ENST00000300515	ENST00000371991		ChiTaRS3.1			BE793378	GOLGA6L9	chr15	82975475	-	SURF4	chr9	136242963	-
3UTR-5UTR	ENST00000387069	ENST00000367837		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000527578		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000415177		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000367826		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000367824		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000445176		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000314674		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-5UTR	ENST00000387069	ENST00000367822		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-intron	ENST00000387069	ENST00000367820		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
3UTR-5UTR	ENST00000387069	ENST00000525067		ChiTaRS3.1			AK292656	RNU11	chr1	28975228	+	HBS1L	chr6	135375957	-
intron-3CDS	ENST00000280772	ENST00000531188		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000280772	ENST00000530164		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000280772	ENST00000278572		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000280772	ENST00000534440		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000280772	ENST00000527446		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000280772	ENST00000526608		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000280772	ENST00000524851		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3UTR	ENST00000280772	ENST00000529285		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3CDS	ENST00000373827	ENST00000531188		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000373827	ENST00000530164		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000373827	ENST00000278572		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000373827	ENST00000534440		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000373827	ENST00000527446		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000373827	ENST00000526608		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000373827	ENST00000524851		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3UTR	ENST00000373827	ENST00000529285		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3CDS	ENST00000355288	ENST00000531188		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000355288	ENST00000530164		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000355288	ENST00000278572		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000355288	ENST00000534440		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000355288	ENST00000527446		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000355288	ENST00000526608		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000355288	ENST00000524851		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3UTR	ENST00000355288	ENST00000529285		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3CDS	ENST00000503366	ENST00000531188		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000503366	ENST00000530164		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000503366	ENST00000278572		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000503366	ENST00000534440		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000503366	ENST00000527446		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000503366	ENST00000526608		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000503366	ENST00000524851		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3UTR	ENST00000503366	ENST00000529285		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
In-frame	ENST00000510382	ENST00000531188		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-intron	ENST00000510382	ENST00000530164		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-intron	ENST00000510382	ENST00000278572		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-intron	ENST00000510382	ENST00000534440		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-intron	ENST00000510382	ENST00000527446		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-intron	ENST00000510382	ENST00000526608		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-intron	ENST00000510382	ENST00000524851		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
5CDS-3UTR	ENST00000510382	ENST00000529285		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3CDS	ENST00000460468	ENST00000531188		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000460468	ENST00000530164		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000460468	ENST00000278572		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000460468	ENST00000534440		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000460468	ENST00000527446		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000460468	ENST00000526608		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-intron	ENST00000460468	ENST00000524851		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
intron-3UTR	ENST00000460468	ENST00000529285		ChiTaRS3.1			AK172736	ANK3	chr10	62267257	-	RPS3	chr11	75115767	+
3UTR-5UTR	ENST00000534336	ENST00000321442		ChiTaRS3.1			AK022287	MALAT1	chr11	65266901	+	SFXN1	chr5	174905593	+
3UTR-3UTR	ENST00000534336	ENST00000515791		ChiTaRS3.1			AK022287	MALAT1	chr11	65266901	+	SFXN1	chr5	174905593	+
3UTR-5UTR	ENST00000534336	ENST00000502393		ChiTaRS3.1			AK022287	MALAT1	chr11	65266901	+	SFXN1	chr5	174905593	+
intron-3UTR	ENST00000534348	ENST00000375071		ChiTaRS3.1			BM850111	NEDD8-MDP1	chr14	24686165	-	CDA	chr1	20945065	+
intron-3UTR	ENST00000534348	ENST00000461985		ChiTaRS3.1			BM850111	NEDD8-MDP1	chr14	24686165	-	CDA	chr1	20945065	+
intron-3UTR	ENST00000604306	ENST00000375071		ChiTaRS3.1			BM850111	NEDD8-MDP1	chr14	24686165	-	CDA	chr1	20945065	+
intron-3UTR	ENST00000604306	ENST00000461985		ChiTaRS3.1			BM850111	NEDD8-MDP1	chr14	24686165	-	CDA	chr1	20945065	+
3UTR-3UTR	ENST00000241014	ENST00000340437		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-3UTR	ENST00000241014	ENST00000394888		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-3UTR	ENST00000241014	ENST00000439958		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-intron	ENST00000241014	ENST00000494016		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-intron	ENST00000241014	ENST00000448745		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-intron	ENST00000241014	ENST00000541963		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-3UTR	ENST00000395629	ENST00000340437		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-3UTR	ENST00000395629	ENST00000394888		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-3UTR	ENST00000395629	ENST00000439958		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-intron	ENST00000395629	ENST00000494016		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-intron	ENST00000395629	ENST00000448745		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
3UTR-intron	ENST00000395629	ENST00000541963		ChiTaRS3.1			BM823483	MAPK8IP1	chr11	45927510	+	CPSF7	chr11	61170585	-
intron-3CDS	ENST00000228140	ENST00000357325		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000228140	ENST00000537739		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000228140	ENST00000368209		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000228140	ENST00000465180		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000228140	ENST00000416666		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000228140	ENST00000368206		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000526895	ENST00000357325		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000526895	ENST00000537739		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000526895	ENST00000368209		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000526895	ENST00000465180		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000526895	ENST00000416666		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000526895	ENST00000368206		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000525634	ENST00000357325		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000525634	ENST00000537739		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000525634	ENST00000368209		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000525634	ENST00000465180		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000525634	ENST00000416666		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-5UTR	ENST00000525634	ENST00000368206		ChiTaRS3.1			BQ324806	RPS13	chr11	17096659	-	HDGF	chr1	156714142	-
intron-3CDS	ENST00000375394	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000375394	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000375394	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000488648	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000488648	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000488648	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000544581	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000544581	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000544581	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000448219	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000448219	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000448219	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000471547	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000471547	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000471547	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000429465	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000429465	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000429465	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000476338	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000476338	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000476338	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000412823	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000412823	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000412823	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000480914	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000480914	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000480914	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000383336	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000383336	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000383336	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000461360	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000461360	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000461360	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
In-frame	ENST00000421789	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
Frame-shit	ENST00000421789	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
Frame-shit	ENST00000421789	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000466463	ENST00000269080		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000466463	ENST00000430352		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
intron-3CDS	ENST00000466463	ENST00000586539		ChiTaRS3.1			AV702413	SKIV2L	chr6	3267301	+	ABCA8	chr17	66864316	-
5CDS-3UTR	ENST00000370321	ENST00000263795		ChiTaRS3.1			AI376067	RPL5	chr1	93307408	-	WDR76	chr15	44158591	-
5CDS-3UTR	ENST00000370321	ENST00000381246		ChiTaRS3.1			AI376067	RPL5	chr1	93307408	-	WDR76	chr15	44158591	-
5CDS-3UTR	ENST00000370321	ENST00000478130		ChiTaRS3.1			AI376067	RPL5	chr1	93307408	-	WDR76	chr15	44158591	-
intron-5UTR	ENST00000265044	ENST00000415609		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000265044	ENST00000349511		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000265044	ENST00000361055		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000265044	ENST00000540295		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000467789	ENST00000415609		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000467789	ENST00000349511		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000467789	ENST00000361055		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000467789	ENST00000540295		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000476217	ENST00000415609		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000476217	ENST00000349511		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000476217	ENST00000361055		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000476217	ENST00000540295		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000478842	ENST00000415609		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000478842	ENST00000349511		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000478842	ENST00000361055		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000478842	ENST00000540295		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000463503	ENST00000415609		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000463503	ENST00000349511		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000463503	ENST00000361055		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000463503	ENST00000540295		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000496050	ENST00000415609		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000496050	ENST00000349511		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000496050	ENST00000361055		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-5UTR	ENST00000496050	ENST00000540295		ChiTaRS3.1			BP379122	SSR3	chr3	156266669	-	UBA3	chr3	69129507	-
intron-3CDS	ENST00000424859	ENST00000301067		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-intron	ENST00000424859	ENST00000549743		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-3CDS	ENST00000535008	ENST00000301067		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-intron	ENST00000535008	ENST00000549743		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-3CDS	ENST00000401970	ENST00000301067		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-intron	ENST00000401970	ENST00000549743		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-3CDS	ENST00000543266	ENST00000301067		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-intron	ENST00000543266	ENST00000549743		ChiTaRS3.1			BF829819	LHFPL3	chr7	104311682	+	KMT2D	chr12	49431501	-
intron-3UTR	ENST00000390548	ENST00000263846		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
intron-intron	ENST00000390548	ENST00000540677		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
intron-intron	ENST00000390548	ENST00000539008		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
intron-intron	ENST00000390548	ENST00000542836		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
intron-intron	ENST00000390548	ENST00000542670		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
intron-intron	ENST00000390548	ENST00000535826		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
intron-intron	ENST00000390548	ENST00000540831		ChiTaRS3.1			BI014205	IGHG1	chr14	106207834	-	SYT7	chr11	61285385	-
5CDS-intron	ENST00000429243	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000429243	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000429243	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549924	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549924	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549924	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000551003	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000551003	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000551003	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000549068	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000549068	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000549068	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549740	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549740	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549740	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000546581	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000546581	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000546581	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000549581	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000549581	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000549581	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000547368	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000547368	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000547368	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000379786	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000379786	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-intron	ENST00000379786	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549135	ENST00000476233		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549135	ENST00000354667		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
5CDS-intron	ENST00000549135	ENST00000356674		ChiTaRS3.1			DB136988	PRR13	chr12	53837329	+	HNRNPA2B1	chr7	26233234	-
intron-3UTR	ENST00000486765	ENST00000452533		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000553257		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000549701		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000358214		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000548671		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000266481		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000547312		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000486765	ENST00000414834		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-3UTR	ENST00000486765	ENST00000381000		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-3UTR	ENST00000361605	ENST00000452533		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000553257		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000549701		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000358214		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000548671		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000266481		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000547312		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-intron	ENST00000361605	ENST00000414834		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
intron-3UTR	ENST00000361605	ENST00000381000		ChiTaRS3.1			CA413140	C1orf174	chr1	3806012	+	DNM1L	chr12	32897372	-
5CDS-3UTR	ENST00000317178	ENST00000532456		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-intron	ENST00000317178	ENST00000539648		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-intron	ENST00000317178	ENST00000528499		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-intron	ENST00000317178	ENST00000263574		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-intron	ENST00000317178	ENST00000345598		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-intron	ENST00000317178	ENST00000338167		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-intron	ENST00000317178	ENST00000278756		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
5CDS-5UTR	ENST00000317178	ENST00000543137		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-3UTR	ENST00000431353	ENST00000532456		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000431353	ENST00000539648		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000431353	ENST00000528499		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000431353	ENST00000263574		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000431353	ENST00000345598		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000431353	ENST00000338167		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000431353	ENST00000278756		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-5UTR	ENST00000431353	ENST00000543137		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-3UTR	ENST00000489376	ENST00000532456		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-intron	ENST00000489376	ENST00000539648		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-intron	ENST00000489376	ENST00000528499		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-intron	ENST00000489376	ENST00000263574		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-intron	ENST00000489376	ENST00000345598		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-intron	ENST00000489376	ENST00000338167		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-intron	ENST00000489376	ENST00000278756		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
3UTR-5UTR	ENST00000489376	ENST00000543137		ChiTaRS3.1			DB177833	ZNF776	chr19	58266002	+	APLP2	chr11	129979387	+
intron-intron	ENST00000296417	ENST00000534312		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000395850		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000533403		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000351554		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000296417	ENST00000415002		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000445143		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000426650		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000437761		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000527577		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000296417	ENST00000528700		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000534312		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000395850		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000533403		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000351554		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-3UTR	ENST00000529158	ENST00000415002		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000445143		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000426650		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000437761		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000527577		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000529158	ENST00000528700		ChiTaRS3.1			BM550843	H2AFZ	chr4	100870031	-	CD59	chr11	33730750	-
intron-intron	ENST00000307961	ENST00000376705		ChiTaRS3.1			DA783707	RPL4	chr15	66795149	-	HS6ST3	chr13	97487488	+
intron-intron	ENST00000568588	ENST00000376705		ChiTaRS3.1			DA783707	RPL4	chr15	66795149	-	HS6ST3	chr13	97487488	+
intron-intron	ENST00000564517	ENST00000376705		ChiTaRS3.1			DA783707	RPL4	chr15	66795149	-	HS6ST3	chr13	97487488	+
intron-intron	ENST00000262030	ENST00000262033		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000262030	ENST00000537473		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000262030	ENST00000414274		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000262030	ENST00000436399		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000262030	ENST00000448157		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000262030	ENST00000456859		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000552919	ENST00000262033		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000552919	ENST00000537473		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000552919	ENST00000414274		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000552919	ENST00000436399		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000552919	ENST00000448157		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000552919	ENST00000456859		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000550162	ENST00000262033		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000550162	ENST00000537473		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000550162	ENST00000414274		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000550162	ENST00000436399		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000550162	ENST00000448157		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-intron	ENST00000550162	ENST00000456859		ChiTaRS3.1			AW852155	ATP5B	chr12	57033603	-	PTGES3	chr12	57076115	+
intron-3CDS	ENST00000230895	ENST00000374595		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000230895	ENST00000325551		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000230895	ENST00000325580		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000230895	ENST00000374594		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000230895	ENST00000488130		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000230895	ENST00000374593		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000432074	ENST00000374595		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000432074	ENST00000325551		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000432074	ENST00000325580		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000432074	ENST00000374594		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000432074	ENST00000488130		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000432074	ENST00000374593		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000510546	ENST00000374595		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000510546	ENST00000325551		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-3CDS	ENST00000510546	ENST00000325580		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000510546	ENST00000374594		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000510546	ENST00000488130		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
intron-intron	ENST00000510546	ENST00000374593		ChiTaRS3.1			DA656066	DAP	chr5	10761170	-	CTNNAL1	chr9	111727783	-
Frame-shit	ENST00000521662	ENST00000356352		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000357604		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000397053		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521662	ENST00000460569		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000356352		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000357604		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000397053		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521688	ENST00000460569		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000356352		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000357604		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000397053		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000520147	ENST00000460569		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000356352		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000357604		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000397053		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-5UTR	ENST00000522407	ENST00000460569		ChiTaRS3.1			BU567506	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-intron	ENST00000373647	ENST00000410032		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
3UTR-5UTR	ENST00000373647	ENST00000264605		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
3UTR-5UTR	ENST00000373647	ENST00000445024		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
3UTR-5UTR	ENST00000373647	ENST00000468178		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
3UTR-5UTR	ENST00000373647	ENST00000338530		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
3UTR-intron	ENST00000373647	ENST00000409373		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-intron	ENST00000493854	ENST00000410032		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000493854	ENST00000264605		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000493854	ENST00000445024		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000493854	ENST00000468178		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000493854	ENST00000338530		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-intron	ENST00000493854	ENST00000409373		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-intron	ENST00000373643	ENST00000410032		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000373643	ENST00000264605		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000373643	ENST00000445024		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000373643	ENST00000468178		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-5UTR	ENST00000373643	ENST00000338530		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-intron	ENST00000373643	ENST00000409373		ChiTaRS3.1			DB166164	RABGAP1	chr9	125866666	+	MLPH	chr2	238395894	+
intron-intron	ENST00000382275	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000382275	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-3UTR	ENST00000382275	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
5UTR-intron	ENST00000507958	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
5UTR-intron	ENST00000507958	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
5UTR-3UTR	ENST00000507958	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000502796	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000502796	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-3UTR	ENST00000502796	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000511273	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000511273	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-3UTR	ENST00000511273	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000274170	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000274170	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-3UTR	ENST00000274170	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000506372	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000506372	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-3UTR	ENST00000506372	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000510297	ENST00000403050		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-intron	ENST00000510297	ENST00000445996		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
intron-3UTR	ENST00000510297	ENST00000469407		ChiTaRS3.1			DA092156	CDH18	chr5	20575569	-	PHF14	chr7	11150974	+
In-frame	ENST00000321153	ENST00000316448		ChiTaRS3.1			CA425105	RPLP2	chr11	810303	-	CALR	chr19	13054597	-
intron-3CDS	ENST00000532004	ENST00000316448		ChiTaRS3.1			CA425105	RPLP2	chr11	810303	-	CALR	chr19	13054597	-
In-frame	ENST00000530797	ENST00000316448		ChiTaRS3.1			CA425105	RPLP2	chr11	810303	-	CALR	chr19	13054597	-
intron-3CDS	ENST00000475441	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000475441	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000475441	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000475441	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000531126	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000531126	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000531126	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000531126	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000488745	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000488745	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000488745	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000488745	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000483436	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000483436	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000483436	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000483436	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384581	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384581	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384581	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384581	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384584	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384584	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384584	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384584	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384342	ENST00000457580		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384342	ENST00000388793		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384342	ENST00000432932		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3CDS	ENST00000384342	ENST00000347433		ChiTaRS3.1			R73443	SNHG12	chr1	28908310	-	SRRT	chr7	100485690	+
intron-3UTR	ENST00000393437	ENST00000316403		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000393437	ENST00000546343		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000393437	ENST00000560366		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000393437	ENST00000405140		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000393437	ENST00000523500		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000409647	ENST00000316403		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000409647	ENST00000546343		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000409647	ENST00000560366		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000409647	ENST00000405140		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
intron-3UTR	ENST00000409647	ENST00000523500		ChiTaRS3.1			AV727212	LONRF2	chr2	100890739	-	CLU	chr8	27455611	-
In-frame	ENST00000264866	ENST00000280379		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
In-frame	ENST00000264866	ENST00000393632		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
In-frame	ENST00000264866	ENST00000393630		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
In-frame	ENST00000264866	ENST00000546600		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
In-frame	ENST00000264866	ENST00000552738		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
In-frame	ENST00000264866	ENST00000393629		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
In-frame	ENST00000264866	ENST00000552115		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
5CDS-3UTR	ENST00000264866	ENST00000549378		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
5CDS-intron	ENST00000264866	ENST00000551397		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000280379		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000393632		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000393630		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000546600		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000552738		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000393629		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3CDS	ENST00000511789	ENST00000552115		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-3UTR	ENST00000511789	ENST00000549378		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
intron-intron	ENST00000511789	ENST00000551397		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000280379		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000393632		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000393630		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000546600		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000552738		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000393629		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3CDS	ENST00000515568	ENST00000552115		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-3UTR	ENST00000515568	ENST00000549378		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-intron	ENST00000515568	ENST00000551397		ChiTaRS3.1			DB119021	TBC1D19	chr4	26622310	+	MON2	chr12	62902064	+
3UTR-intron	ENST00000356978	ENST00000244565		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
3UTR-intron	ENST00000356978	ENST00000373164		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
3UTR-intron	ENST00000356978	ENST00000470102		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000447653	ENST00000244565		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000447653	ENST00000373164		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000447653	ENST00000470102		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000555132	ENST00000244565		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000555132	ENST00000373164		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000555132	ENST00000470102		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000553542	ENST00000244565		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000553542	ENST00000373164		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000553542	ENST00000470102		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000544280	ENST00000244565		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000544280	ENST00000373164		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
intron-intron	ENST00000544280	ENST00000470102		ChiTaRS3.1			AA496229	CALM1	chr14	90872653	+	UNC5CL	chr6	41029533	+
3UTR-3CDS	ENST00000221847	ENST00000412770		ChiTaRS3.1			AA367537	EBI3	chr19	4237212	+	PPP6R1	chr19	55752380	-
3UTR-3CDS	ENST00000221847	ENST00000587283		ChiTaRS3.1			AA367537	EBI3	chr19	4237212	+	PPP6R1	chr19	55752380	-
3UTR-3CDS	ENST00000534336	ENST00000538159		ChiTaRS3.1			T30870	MALAT1	chr11	65267967	+	USO1	chr4	76721511	+
3UTR-3CDS	ENST00000534336	ENST00000514213		ChiTaRS3.1			T30870	MALAT1	chr11	65267967	+	USO1	chr4	76721511	+
intron-intron	ENST00000393437	ENST00000369825		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000393437	ENST00000369811		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000393437	ENST00000369815		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000393437	ENST00000337003		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000393437	ENST00000309579		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000409647	ENST00000369825		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000409647	ENST00000369811		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000409647	ENST00000369815		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000409647	ENST00000337003		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
intron-intron	ENST00000409647	ENST00000309579		ChiTaRS3.1			CK004850	LONRF2	chr2	100894342	-	USMG5	chr10	105156221	-
In-frame	ENST00000250237	ENST00000366610		ChiTaRS3.1			AI919001	QTRT1	chr19	10823892	-	IRF2BP2	chr1	234743504	+
In-frame	ENST00000250237	ENST00000366609		ChiTaRS3.1			AI919001	QTRT1	chr19	10823892	-	IRF2BP2	chr1	234743504	+
5CDS-5UTR	ENST00000250237	ENST00000491430		ChiTaRS3.1			AI919001	QTRT1	chr19	10823892	-	IRF2BP2	chr1	234743504	+
intron-3CDS	ENST00000585885	ENST00000366610		ChiTaRS3.1			AI919001	QTRT1	chr19	10823892	-	IRF2BP2	chr1	234743504	+
intron-3CDS	ENST00000585885	ENST00000366609		ChiTaRS3.1			AI919001	QTRT1	chr19	10823892	-	IRF2BP2	chr1	234743504	+
intron-5UTR	ENST00000585885	ENST00000491430		ChiTaRS3.1			AI919001	QTRT1	chr19	10823892	-	IRF2BP2	chr1	234743504	+
intron-intron	ENST00000521022	ENST00000517997		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521022	ENST00000457458		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-5UTR	ENST00000521022	ENST00000357227		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521022	ENST00000518022		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521022	ENST00000276052		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000416984	ENST00000517997		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000416984	ENST00000457458		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-5UTR	ENST00000416984	ENST00000357227		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000416984	ENST00000518022		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000416984	ENST00000276052		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521777	ENST00000517997		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521777	ENST00000457458		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-5UTR	ENST00000521777	ENST00000357227		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521777	ENST00000518022		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521777	ENST00000276052		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000397363	ENST00000517997		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000397363	ENST00000457458		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-5UTR	ENST00000397363	ENST00000357227		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000397363	ENST00000518022		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000397363	ENST00000276052		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521070	ENST00000517997		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521070	ENST00000457458		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-5UTR	ENST00000521070	ENST00000357227		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521070	ENST00000518022		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
intron-intron	ENST00000521070	ENST00000276052		ChiTaRS3.1			X66363	INTS9	chr8	28691737	-	CDK16	chrX	47078467	+
3UTR-intron	ENST00000562057	ENST00000304058		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000562057	ENST00000510708		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000562057	ENST00000515439		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000344051	ENST00000304058		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000344051	ENST00000510708		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000344051	ENST00000515439		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000431806	ENST00000304058		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000431806	ENST00000510708		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
3UTR-intron	ENST00000431806	ENST00000515439		ChiTaRS3.1			BF242456	SPINT1	chr15	41149662	+	DTWD2	chr5	118309674	+
intron-3CDS	ENST00000295767	ENST00000421745		ChiTaRS3.1			DA459346	CHCHD4	chr3	14154470	-	BIRC6	chr2	32664585	+
intron-3CDS	ENST00000396914	ENST00000421745		ChiTaRS3.1			DA459346	CHCHD4	chr3	14154470	-	BIRC6	chr2	32664585	+
intron-3CDS	ENST00000204549	ENST00000246533		ChiTaRS3.1			BG767436	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000589146		ChiTaRS3.1			BG767436	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000587718		ChiTaRS3.1			BG767436	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000590874		ChiTaRS3.1			BG767436	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000588815		ChiTaRS3.1			BG767436	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000588780		ChiTaRS3.1			BG767436	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
3UTR-intron	ENST00000439590	ENST00000445983		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000439590	ENST00000431381		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000439590	ENST00000373619		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000439590	ENST00000246139		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000445983		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000431381		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000311111	ENST00000373619		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000311111	ENST00000246139		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000445983		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000431381		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000584577	ENST00000373619		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000584577	ENST00000246139		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000445983		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000431381		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-intron	ENST00000534490	ENST00000373619		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
intron-5UTR	ENST00000534490	ENST00000246139		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000445983		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000431381		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-intron	ENST00000533498	ENST00000373619		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000533498	ENST00000246139		ChiTaRS3.1			BE391347	RPL38	chr17	72206007	+	CITED1	chrX	71526691	-
3UTR-5UTR	ENST00000387069	ENST00000053867		ChiTaRS3.1			DA594512	RNU11	chr1	28975229	+	GRN	chr17	42422661	+
3UTR-intron	ENST00000387069	ENST00000589265		ChiTaRS3.1			DA594512	RNU11	chr1	28975229	+	GRN	chr17	42422661	+
3UTR-intron	ENST00000387069	ENST00000589923		ChiTaRS3.1			DA594512	RNU11	chr1	28975229	+	GRN	chr17	42422661	+
intron-intron	ENST00000529639	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
intron-intron	ENST00000531743	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
intron-intron	ENST00000525297	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
intron-intron	ENST00000527548	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
intron-intron	ENST00000279259	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
5CDS-intron	ENST00000529259	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
intron-intron	ENST00000434372	ENST00000578844		ChiTaRS3.1			X75315	FAU	chr11	64888171	-	MIR5095	chr20	55966720	+
3UTR-3UTR	ENST00000276603	ENST00000228506		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000412616		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000535413		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3UTR	ENST00000276602	ENST00000228506		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000412616		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000535413		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000520783	ENST00000228506		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000412616		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000535413		ChiTaRS3.1			BE501371	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-5UTR	ENST00000394524	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394524	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394524	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394524	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394524	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394524	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000454265	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000454265	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000454265	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000454265	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000454265	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000454265	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394526	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394526	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394526	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394526	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394526	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394526	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000429180	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000429180	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000429180	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000429180	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000429180	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000429180	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000296402	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000296402	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000296402	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000296402	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000296402	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000296402	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000418639	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000418639	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000418639	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000418639	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000418639	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000418639	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000511664	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000511664	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000511664	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000511664	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000511664	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000511664	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000342666	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000342666	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000342666	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000342666	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000342666	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000342666	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000515496	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000515496	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000515496	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000515496	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000515496	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000515496	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000514328	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000514328	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000514328	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000514328	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000514328	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000514328	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394522	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394522	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000394522	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394522	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394522	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000394522	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000505990	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000505990	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000505990	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000505990	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000505990	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000505990	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000379773	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000379773	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000379773	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000379773	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000379773	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000379773	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000508738	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000508738	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000508738	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000508738	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000508738	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000508738	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000509907	ENST00000410024		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000509907	ENST00000409295		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-5UTR	ENST00000509907	ENST00000409091		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000509907	ENST00000350033		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000509907	ENST00000410017		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
intron-intron	ENST00000509907	ENST00000373608		ChiTaRS3.1			DA353944	CAMK2D	chr4	114419919	-	COPS7B	chr2	232646440	+
Frame-shit	ENST00000358823	ENST00000461153		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
Frame-shit	ENST00000358823	ENST00000420699		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-intron	ENST00000358823	ENST00000357042		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
In-frame	ENST00000413307	ENST00000461153		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
In-frame	ENST00000413307	ENST00000420699		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-intron	ENST00000413307	ENST00000357042		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
Frame-shit	ENST00000236925	ENST00000461153		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
Frame-shit	ENST00000236925	ENST00000420699		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-intron	ENST00000236925	ENST00000357042		ChiTaRS3.1			BU567810	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-5UTR	ENST00000311528	ENST00000296861		ChiTaRS3.1			DB231778	RPL13	chr16	89627753	+	TNFRSF21	chr6	47277287	-
5CDS-5UTR	ENST00000567815	ENST00000296861		ChiTaRS3.1			DB231778	RPL13	chr16	89627753	+	TNFRSF21	chr6	47277287	-
5CDS-5UTR	ENST00000452368	ENST00000296861		ChiTaRS3.1			DB231778	RPL13	chr16	89627753	+	TNFRSF21	chr6	47277287	-
5CDS-5UTR	ENST00000393099	ENST00000296861		ChiTaRS3.1			DB231778	RPL13	chr16	89627753	+	TNFRSF21	chr6	47277287	-
intron-intron	ENST00000394456	ENST00000390394		ChiTaRS3.1			BM703996	GTF2F1	chr19	6380653	-	TRBV20-1	chr16	2138064	+
intron-intron	ENST00000429701	ENST00000390394		ChiTaRS3.1			BM703996	GTF2F1	chr19	6380653	-	TRBV20-1	chr16	2138064	+
intron-intron	ENST00000255631	ENST00000534307		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000528302		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000322535		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000534307		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000528302		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000322535		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000534307		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000528302		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000322535		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000534307		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000528302		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000322535		ChiTaRS3.1			BC051237	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
Frame-shit	ENST00000270586	ENST00000306065		ChiTaRS3.1			CN430188	PSMB6	chr17	4701354	+	ANKRD27	chr19	33095320	-
5CDS-intron	ENST00000270586	ENST00000587352		ChiTaRS3.1			CN430188	PSMB6	chr17	4701354	+	ANKRD27	chr19	33095320	-
intron-3CDS	ENST00000261978	ENST00000260402		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000261978	ENST00000557821		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000261978	ENST00000456256		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-intron	ENST00000261978	ENST00000543785		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000556690	ENST00000260402		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000556690	ENST00000557821		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000556690	ENST00000456256		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-intron	ENST00000556690	ENST00000543785		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000557425	ENST00000260402		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000557425	ENST00000557821		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000557425	ENST00000456256		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-intron	ENST00000557425	ENST00000543785		ChiTaRS3.1			DA468797	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000532636	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000532636	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000532636	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000533540	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000533540	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000533540	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000453788	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000453788	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000453788	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000534624	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000534624	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000534624	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000227378	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000227378	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000227378	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000534319	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000534319	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000534319	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000526110	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000526110	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000526110	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000526862	ENST00000297785		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000526862	ENST00000376939		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-5UTR	ENST00000526862	ENST00000482210		ChiTaRS3.1			DA668305	HSPA8	chr11	122930043	-	ALDH1A1	chr9	75542085	-
intron-3CDS	ENST00000526660	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000289575	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000341411	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000532236	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000531756	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000525650	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000454962	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
intron-3CDS	ENST00000428359	ENST00000268171		ChiTaRS3.1			BF990968	SLCO2B1	chr11	74869269	-	FURIN	chr15	91422933	+
3UTR-3UTR	ENST00000296456	ENST00000487159		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
3UTR-3UTR	ENST00000296456	ENST00000327628		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
3UTR-3UTR	ENST00000296456	ENST00000449246		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
3UTR-3UTR	ENST00000296456	ENST00000341421		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
3UTR-3UTR	ENST00000296456	ENST00000396175		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
intron-3UTR	ENST00000438011	ENST00000487159		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
intron-3UTR	ENST00000438011	ENST00000327628		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
intron-3UTR	ENST00000438011	ENST00000449246		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
intron-3UTR	ENST00000438011	ENST00000341421		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
intron-3UTR	ENST00000438011	ENST00000396175		ChiTaRS3.1			J03068	APEH	chr3	49720932	+	TRAK1	chr3	42233093	+
intron-intron	ENST00000374736	ENST00000450253		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374736	ENST00000280892		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374736	ENST00000504432		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374736	ENST00000505992		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374736	ENST00000504472		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000494467	ENST00000450253		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000494467	ENST00000280892		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000494467	ENST00000504432		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000494467	ENST00000505992		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000494467	ENST00000504472		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000423487	ENST00000450253		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000423487	ENST00000280892		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000423487	ENST00000504432		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000423487	ENST00000505992		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000423487	ENST00000504472		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374733	ENST00000450253		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374733	ENST00000280892		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374733	ENST00000504432		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374733	ENST00000505992		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000374733	ENST00000504472		ChiTaRS3.1			BF879888	ABCA1	chr9	107587996	-	EIF4E	chr4	99810001	-
intron-intron	ENST00000265471	ENST00000381269		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000356921		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000357887		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000216568		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000394330		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000528359		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000534137		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-3UTR	ENST00000265471	ENST00000533541		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000265471	ENST00000533899		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000381269		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000356921		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000357887		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000216568		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000394330		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000528359		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000534137		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-3UTR	ENST00000531383	ENST00000533541		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000531383	ENST00000533899		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000381269		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000356921		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000357887		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000216568		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000394330		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000528359		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000534137		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-3UTR	ENST00000534026	ENST00000533541		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
intron-intron	ENST00000534026	ENST00000533899		ChiTaRS3.1			BX107986	B3GAT3	chr11	62388055	-	SLC8A3	chr14	70514099	-
In-frame	ENST00000534358	ENST00000373644		ChiTaRS3.1			FM165196	KMT2A	chr11	118355030	+	TET1	chr10	70441154	+
In-frame	ENST00000389506	ENST00000373644		ChiTaRS3.1			FM165196	KMT2A	chr11	118355030	+	TET1	chr10	70441154	+
In-frame	ENST00000354520	ENST00000373644		ChiTaRS3.1			FM165196	KMT2A	chr11	118355030	+	TET1	chr10	70441154	+
3UTR-3CDS	ENST00000420751	ENST00000373644		ChiTaRS3.1			FM165196	KMT2A	chr11	118355030	+	TET1	chr10	70441154	+
5CDS-3UTR	ENST00000403593	ENST00000431666		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000403593	ENST00000338624		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000403593	ENST00000245615		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000403593	ENST00000391754		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000403593	ENST00000474910		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000345635	ENST00000431666		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000345635	ENST00000338624		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000345635	ENST00000245615		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000345635	ENST00000391754		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000345635	ENST00000474910		ChiTaRS3.1			AV726722	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
3UTR-3UTR	ENST00000534336	ENST00000390237		ChiTaRS3.1			CB051771	MALAT1	chr11	65267432	+	IGKC	chr2	89156840	-
5UTR-5UTR	ENST00000371227	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371227	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371227	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371227	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371227	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371227	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371249	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371249	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371249	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371249	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371249	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371249	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000306402	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000306402	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000306402	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000306402	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000306402	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000306402	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000353505	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000353505	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000353505	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000353505	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000353505	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000353505	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371246	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371246	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371246	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371246	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371246	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371246	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000347291	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000347291	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000347291	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000347291	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000347291	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000347291	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000393949	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000393949	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000393949	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000393949	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000393949	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000393949	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371247	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371247	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371247	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371247	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371247	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000371247	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000607232	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000607232	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000607232	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000607232	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000607232	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000607232	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371245	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371245	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371245	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371245	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371245	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371245	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000361941	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000361941	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000361941	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000361941	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000361941	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000361941	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000277982	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000277982	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000277982	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000277982	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000277982	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000277982	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000354106	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000354106	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000354106	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000354106	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000354106	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000354106	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371239	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371239	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371239	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371239	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371239	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371239	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371241	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371241	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371241	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371241	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371241	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
intron-5UTR	ENST00000371241	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000474353	ENST00000393328		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000474353	ENST00000393331		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000474353	ENST00000347630		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000474353	ENST00000504102		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000474353	ENST00000503676		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
5UTR-5UTR	ENST00000474353	ENST00000513080		ChiTaRS3.1			DB256869	SORBS1	chr10	97321076	-	SPOP	chr17	47700240	-
3UTR-3CDS	ENST00000374692	ENST00000400000		ChiTaRS3.1			AU117419	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3CDS	ENST00000374692	ENST00000340541		ChiTaRS3.1			AU117419	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3UTR	ENST00000374692	ENST00000584796		ChiTaRS3.1			AU117419	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3CDS	ENST00000374688	ENST00000400000		ChiTaRS3.1			AU117419	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3CDS	ENST00000374688	ENST00000340541		ChiTaRS3.1			AU117419	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3UTR	ENST00000374688	ENST00000584796		ChiTaRS3.1			AU117419	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
intron-intron	ENST00000338779	ENST00000286301		ChiTaRS3.1			BG566804	MTSS1L	chr16	70707466	-	CSF1R	chr5	149474444	+
intron-intron	ENST00000338779	ENST00000515239		ChiTaRS3.1			BG566804	MTSS1L	chr16	70707466	-	CSF1R	chr5	149474444	+
intron-intron	ENST00000338779	ENST00000543093		ChiTaRS3.1			BG566804	MTSS1L	chr16	70707466	-	CSF1R	chr5	149474444	+
intron-3CDS	ENST00000396402	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396402	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396402	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396402	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396402	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000396402	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000260433	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000260433	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000260433	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000260433	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000260433	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000260433	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396404	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396404	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396404	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396404	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000396404	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000396404	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000559878	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000559878	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000559878	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000559878	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000559878	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000559878	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000405913	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000405913	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000405913	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000405913	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000405913	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000405913	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000557858	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000557858	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000557858	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000557858	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000557858	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000557858	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000492852	ENST00000359786		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000492852	ENST00000438665		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000492852	ENST00000575158		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000492852	ENST00000361007		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3CDS	ENST00000492852	ENST00000545534		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-intron	ENST00000492852	ENST00000573198		ChiTaRS3.1			DA833622	CYP19A1	chr15	51520045	-	MYO1C	chr17	1371420	-
intron-3UTR	ENST00000462448	ENST00000361236		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
intron-3UTR	ENST00000462448	ENST00000398136		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
intron-intron	ENST00000462448	ENST00000532161		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
intron-intron	ENST00000462448	ENST00000525577		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
3UTR-3UTR	ENST00000319357	ENST00000361236		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
3UTR-3UTR	ENST00000319357	ENST00000398136		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
3UTR-intron	ENST00000319357	ENST00000532161		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
3UTR-intron	ENST00000319357	ENST00000525577		ChiTaRS3.1			CN282882	STK17A	chr7	43665335	+	TMEM123	chr11	102268118	-
3UTR-3UTR	ENST00000371621	ENST00000222329		ChiTaRS3.1			BU682148	PTPN1	chr20	49201006	-	ERF	chr19	42752229	+
3UTR-intron	ENST00000371621	ENST00000440177		ChiTaRS3.1			BU682148	PTPN1	chr20	49201006	-	ERF	chr19	42752229	+
3UTR-intron	ENST00000371621	ENST00000595941		ChiTaRS3.1			BU682148	PTPN1	chr20	49201006	-	ERF	chr19	42752229	+
intron-3UTR	ENST00000541713	ENST00000222329		ChiTaRS3.1			BU682148	PTPN1	chr20	49201006	-	ERF	chr19	42752229	+
intron-intron	ENST00000541713	ENST00000440177		ChiTaRS3.1			BU682148	PTPN1	chr20	49201006	-	ERF	chr19	42752229	+
intron-intron	ENST00000541713	ENST00000595941		ChiTaRS3.1			BU682148	PTPN1	chr20	49201006	-	ERF	chr19	42752229	+
Frame-shit	ENST00000392379	ENST00000272793		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000392379	ENST00000418381		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000392379	ENST00000392631		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
5CDS-intron	ENST00000392379	ENST00000465630		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
In-frame	ENST00000392378	ENST00000272793		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000392378	ENST00000418381		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000392378	ENST00000392631		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
5CDS-intron	ENST00000392378	ENST00000465630		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
In-frame	ENST00000358186	ENST00000272793		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000358186	ENST00000418381		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000358186	ENST00000392631		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
5CDS-intron	ENST00000358186	ENST00000465630		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
In-frame	ENST00000441275	ENST00000272793		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000441275	ENST00000418381		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
Frame-shit	ENST00000441275	ENST00000392631		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
5CDS-intron	ENST00000441275	ENST00000465630		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
intron-3CDS	ENST00000476764	ENST00000272793		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
intron-3CDS	ENST00000476764	ENST00000418381		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
intron-3CDS	ENST00000476764	ENST00000392631		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
intron-intron	ENST00000476764	ENST00000465630		ChiTaRS3.1			BF679324	BDH1	chr3	197249510	-	UBR3	chr2	170938234	+
intron-intron	ENST00000295874	ENST00000494674		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000295874	ENST00000337659		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000295874	ENST00000538861		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000474889	ENST00000494674		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000474889	ENST00000337659		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000474889	ENST00000538861		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000495879	ENST00000494674		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000495879	ENST00000337659		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-intron	ENST00000495879	ENST00000538861		ChiTaRS3.1			AW803010	PTPRG	chr3	61728289	+	PRPF4B	chr6	4050013	-
intron-3CDS	ENST00000390548	ENST00000426455		ChiTaRS3.1			DB070297	IGHG1	chr15	22724100	-	STAG3	chr7	99786434	+
intron-3CDS	ENST00000390548	ENST00000394018		ChiTaRS3.1			DB070297	IGHG1	chr15	22724100	-	STAG3	chr7	99786434	+
intron-3CDS	ENST00000390548	ENST00000317296		ChiTaRS3.1			DB070297	IGHG1	chr15	22724100	-	STAG3	chr7	99786434	+
intron-intron	ENST00000390548	ENST00000440830		ChiTaRS3.1			DB070297	IGHG1	chr15	22724100	-	STAG3	chr7	99786434	+
intron-intron	ENST00000397817	ENST00000354989		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000360031		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000376652		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000433259		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000485936		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000354989		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000360031		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000376652		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000433259		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000485936		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000354989		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000360031		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000376652		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000433259		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000485936		ChiTaRS3.1			EL582886	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-3UTR	ENST00000351111	ENST00000418604		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000351111	ENST00000303958		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000351111	ENST00000361621		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-intron	ENST00000351111	ENST00000466486		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000290208	ENST00000418604		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000290208	ENST00000303958		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000290208	ENST00000361621		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-intron	ENST00000290208	ENST00000466486		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000414011	ENST00000418604		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000414011	ENST00000303958		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000414011	ENST00000361621		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-intron	ENST00000414011	ENST00000466486		ChiTaRS3.1			ES316348	MRPL10	chr17	45900877	-	PLP1	chrX	103045970	+
intron-3UTR	ENST00000273854	ENST00000334256		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-intron	ENST00000273854	ENST00000469804		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-3UTR	ENST00000432638	ENST00000334256		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-intron	ENST00000432638	ENST00000469804		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-3UTR	ENST00000354839	ENST00000334256		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-intron	ENST00000354839	ENST00000469804		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-3UTR	ENST00000511294	ENST00000334256		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-intron	ENST00000511294	ENST00000469804		ChiTaRS3.1			BM828717	EPHA5	chr4	66439405	+	KPNA4	chr3	160219426	-
intron-3UTR	ENST00000380394	ENST00000541179		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380394	ENST00000379749		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380394	ENST00000379747		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380394	ENST00000379743		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380394	ENST00000379742		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000380394	ENST00000541481		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000380394	ENST00000497145		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000498815	ENST00000541179		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000498815	ENST00000379749		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000498815	ENST00000379747		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000498815	ENST00000379743		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000498815	ENST00000379742		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000498815	ENST00000541481		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000498815	ENST00000497145		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380384	ENST00000541179		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380384	ENST00000379749		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380384	ENST00000379747		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380384	ENST00000379743		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380384	ENST00000379742		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000380384	ENST00000541481		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000380384	ENST00000497145		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000315377	ENST00000541179		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000315377	ENST00000379749		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000315377	ENST00000379747		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000315377	ENST00000379743		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000315377	ENST00000379742		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000315377	ENST00000541481		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000315377	ENST00000497145		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380381	ENST00000541179		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380381	ENST00000379749		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380381	ENST00000379747		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380381	ENST00000379743		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-3UTR	ENST00000380381	ENST00000379742		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000380381	ENST00000541481		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000380381	ENST00000497145		ChiTaRS3.1			AA026363	RPS6	chr9	19376587	+	POSTN	chr13	38137332	+
intron-intron	ENST00000369244	ENST00000467125		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-3UTR	ENST00000369244	ENST00000368498		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-3UTR	ENST00000369244	ENST00000535237		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-3UTR	ENST00000369244	ENST00000052569		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-intron	ENST00000229971	ENST00000467125		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-3UTR	ENST00000229971	ENST00000368498		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-3UTR	ENST00000229971	ENST00000535237		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
intron-3UTR	ENST00000229971	ENST00000052569		ChiTaRS3.1			BF086751	FBXL4	chr6	99323437	-	GOPC	chr6	117883846	-
Frame-shit	ENST00000374550	ENST00000263280		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
Frame-shit	ENST00000374550	ENST00000391910		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
Frame-shit	ENST00000374550	ENST00000539396		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
5CDS-5UTR	ENST00000374550	ENST00000594357		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
3UTR-3CDS	ENST00000482370	ENST00000263280		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
3UTR-3CDS	ENST00000482370	ENST00000391910		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
3UTR-3CDS	ENST00000482370	ENST00000539396		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
3UTR-5UTR	ENST00000482370	ENST00000594357		ChiTaRS3.1			AU134575	RPL11	chr1	24022367	+	STRN4	chr19	47228158	-
3UTR-3CDS	ENST00000359882	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-intron	ENST00000359882	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
intron-3CDS	ENST00000486272	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
intron-intron	ENST00000486272	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
intron-3CDS	ENST00000537758	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
intron-intron	ENST00000537758	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-3CDS	ENST00000367574	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-intron	ENST00000367574	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-3CDS	ENST00000355961	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-intron	ENST00000355961	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
intron-3CDS	ENST00000361988	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
intron-intron	ENST00000361988	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-3CDS	ENST00000326194	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-intron	ENST00000326194	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-3CDS	ENST00000355092	ENST00000545606		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
3UTR-intron	ENST00000355092	ENST00000539109		ChiTaRS3.1			BQ772375	PORCN	chrX	48379128	-	CAND1	chr12	67699623	-
5CDS-intron	ENST00000521891	ENST00000357716		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000521891	ENST00000486284		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000521891	ENST00000389336		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000521891	ENST00000402647		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000521891	ENST00000403881		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000521891	ENST00000458641		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000517683	ENST00000357716		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000517683	ENST00000486284		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000517683	ENST00000389336		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000517683	ENST00000402647		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000517683	ENST00000403881		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000517683	ENST00000458641		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000050961	ENST00000357716		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000050961	ENST00000486284		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000050961	ENST00000389336		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000050961	ENST00000402647		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000050961	ENST00000403881		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000050961	ENST00000458641		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000455469	ENST00000357716		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000455469	ENST00000486284		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000455469	ENST00000389336		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000455469	ENST00000402647		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000455469	ENST00000403881		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
5CDS-intron	ENST00000455469	ENST00000458641		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000518282	ENST00000357716		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000518282	ENST00000486284		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000518282	ENST00000389336		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000518282	ENST00000402647		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000518282	ENST00000403881		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-intron	ENST00000518282	ENST00000458641		ChiTaRS3.1			AV730988	ZFHX4	chr8	77779521	+	GRM7	chr3	7288781	+
intron-3CDS	ENST00000318325	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000318325	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370241	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370241	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370242	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370242	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000299179	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000299179	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000342071	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000342071	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370236	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370236	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000493646	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000493646	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000477279	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000477279	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000318364	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000318364	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3CDS	ENST00000370234	ENST00000257013		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-intron	ENST00000370234	ENST00000464369		ChiTaRS3.1			BF112045	MRPL43	chr10	102746220	+	FAM127A	chrX	134166732	-
intron-3UTR	ENST00000155840	ENST00000458501		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000155840	ENST00000379644		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000155840	ENST00000297798		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000155840	ENST00000521576		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000335475	ENST00000458501		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000335475	ENST00000379644		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000335475	ENST00000297798		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000335475	ENST00000521576		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000526095	ENST00000458501		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000526095	ENST00000379644		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000526095	ENST00000297798		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-3UTR	ENST00000526095	ENST00000521576		ChiTaRS3.1			T20200	KCNQ1	chr11	2696355	-	HGSNAT	chr8	43055606	+
intron-intron	ENST00000206423	ENST00000475548		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000206423	ENST00000358743		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000206423	ENST00000347557		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000206423	ENST00000333137		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000206423	ENST00000404574		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-intron	ENST00000439685	ENST00000475548		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000439685	ENST00000358743		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000439685	ENST00000347557		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000439685	ENST00000333137		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000439685	ENST00000404574		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-intron	ENST00000475181	ENST00000475548		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000475181	ENST00000358743		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000475181	ENST00000347557		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000475181	ENST00000333137		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
intron-3UTR	ENST00000475181	ENST00000404574		ChiTaRS3.1			BQ181664	CCDC80	chr3	112359819	+	SMTN	chr22	31500507	-
5CDS-3UTR	ENST00000554581	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000554581	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000554581	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-3UTR	ENST00000407796	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000407796	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000407796	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-3UTR	ENST00000349310	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000349310	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000349310	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-3UTR	ENST00000402615	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000402615	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000402615	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-3UTR	ENST00000555528	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000555528	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000555528	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-3UTR	ENST00000554848	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000554848	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
5CDS-intron	ENST00000554848	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-3UTR	ENST00000555458	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000555458	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000555458	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-3UTR	ENST00000554192	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000554192	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000554192	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-3UTR	ENST00000544168	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000544168	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000544168	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-3UTR	ENST00000554585	ENST00000234310		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000554585	ENST00000409752		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000554585	ENST00000409377		ChiTaRS3.1			BC063408	AKT1	chr14	105258934	-	PPP3R1	chr2	68406102	-
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			AI631714	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
5CDS-intron	ENST00000310144	ENST00000282050		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000310144	ENST00000593152		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000310144	ENST00000590665		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-5UTR	ENST00000310144	ENST00000398752		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000310144	ENST00000591267		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
intron-intron	ENST00000582420	ENST00000282050		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
intron-intron	ENST00000582420	ENST00000593152		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
intron-intron	ENST00000582420	ENST00000590665		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
intron-5UTR	ENST00000582420	ENST00000398752		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
intron-intron	ENST00000582420	ENST00000591267		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000580864	ENST00000282050		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000580864	ENST00000593152		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000580864	ENST00000590665		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-5UTR	ENST00000580864	ENST00000398752		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000580864	ENST00000591267		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000375812	ENST00000282050		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000375812	ENST00000593152		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000375812	ENST00000590665		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-5UTR	ENST00000375812	ENST00000398752		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000375812	ENST00000591267		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000581882	ENST00000282050		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000581882	ENST00000593152		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000581882	ENST00000590665		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-5UTR	ENST00000581882	ENST00000398752		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
5CDS-intron	ENST00000581882	ENST00000591267		ChiTaRS3.1			AU143199	PSMC5	chr17	61909296	+	ATP5A1	chr18	43678287	-
intron-intron	ENST00000316403	ENST00000262948		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000316403	ENST00000394867		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000316403	ENST00000599345		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000546343	ENST00000262948		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000546343	ENST00000394867		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000546343	ENST00000599345		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000560366	ENST00000262948		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000560366	ENST00000394867		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000560366	ENST00000599345		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000405140	ENST00000262948		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000405140	ENST00000394867		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000405140	ENST00000599345		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000523500	ENST00000262948		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000523500	ENST00000394867		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
intron-intron	ENST00000523500	ENST00000599345		ChiTaRS3.1			BF920101	CLU	chr8	27466480	-	MAP2K2	chr19	4102492	-
In-frame	ENST00000342947	ENST00000242059		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
In-frame	ENST00000342947	ENST00000426154		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000342947	ENST00000425819		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000342947	ENST00000434476		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000342947	ENST00000494620		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000342947	ENST00000409570		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000342947	ENST00000409497		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-intron	ENST00000342947	ENST00000416113		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-3CDS	ENST00000419307	ENST00000242059		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-3CDS	ENST00000419307	ENST00000426154		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000419307	ENST00000425819		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000419307	ENST00000434476		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000419307	ENST00000494620		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000419307	ENST00000409570		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000419307	ENST00000409497		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-intron	ENST00000419307	ENST00000416113		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-3CDS	ENST00000545231	ENST00000242059		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-3CDS	ENST00000545231	ENST00000426154		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000545231	ENST00000425819		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000545231	ENST00000434476		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000545231	ENST00000494620		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000545231	ENST00000409570		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000545231	ENST00000409497		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-intron	ENST00000545231	ENST00000416113		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-3CDS	ENST00000409970	ENST00000242059		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-3CDS	ENST00000409970	ENST00000426154		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000409970	ENST00000425819		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000409970	ENST00000434476		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000409970	ENST00000494620		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000409970	ENST00000409570		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-5UTR	ENST00000409970	ENST00000409497		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5UTR-intron	ENST00000409970	ENST00000416113		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
Frame-shit	ENST00000409775	ENST00000242059		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
Frame-shit	ENST00000409775	ENST00000426154		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000409775	ENST00000425819		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000409775	ENST00000434476		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000409775	ENST00000494620		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000409775	ENST00000409570		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-5UTR	ENST00000409775	ENST00000409497		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-intron	ENST00000409775	ENST00000416113		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-3CDS	ENST00000559637	ENST00000242059		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-3CDS	ENST00000559637	ENST00000426154		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-5UTR	ENST00000559637	ENST00000425819		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-5UTR	ENST00000559637	ENST00000434476		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-5UTR	ENST00000559637	ENST00000494620		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-5UTR	ENST00000559637	ENST00000409570		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-5UTR	ENST00000559637	ENST00000409497		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
intron-intron	ENST00000559637	ENST00000416113		ChiTaRS3.1			DA314001	DFNA5	chr7	24784181	-	SCRN1	chr7	29994978	-
5CDS-intron	ENST00000362512	ENST00000532636		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-intron	ENST00000362512	ENST00000533540		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-5UTR	ENST00000362512	ENST00000453788		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-5UTR	ENST00000362512	ENST00000534624		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-intron	ENST00000362512	ENST00000227378		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-intron	ENST00000362512	ENST00000534319		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-intron	ENST00000362512	ENST00000526110		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
5CDS-intron	ENST00000362512	ENST00000526862		ChiTaRS3.1			DA378775	RNU12	chr22	43011399	+	HSPA8	chr11	122932844	-
Frame-shit	ENST00000394375	ENST00000325558		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000394375	ENST00000543125		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000394375	ENST00000538258		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
Frame-shit	ENST00000608620	ENST00000325558		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000608620	ENST00000543125		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000608620	ENST00000538258		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
Frame-shit	ENST00000238983	ENST00000325558		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000238983	ENST00000543125		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000238983	ENST00000538258		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
Frame-shit	ENST00000355843	ENST00000325558		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000355843	ENST00000543125		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
5CDS-intron	ENST00000355843	ENST00000538258		ChiTaRS3.1			DA967267	LIPF	chr10	90428486	+	PGA3	chr11	60974027	+
3UTR-3UTR	ENST00000274137	ENST00000313949		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-intron	ENST00000274137	ENST00000371098		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000371075		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000371100		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-intron	ENST00000274137	ENST00000371099		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000371102		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000464624		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-intron	ENST00000274137	ENST00000306120		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000371095		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000371085		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000354359		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000265620		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-3UTR	ENST00000274137	ENST00000306090		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
3UTR-intron	ENST00000274137	ENST00000371081		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000313949		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000469176	ENST00000371098		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000371075		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000371100		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000469176	ENST00000371099		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000371102		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000464624		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000469176	ENST00000306120		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000371095		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000371085		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000354359		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000265620		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000469176	ENST00000306090		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000469176	ENST00000371081		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000313949		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000510329	ENST00000371098		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000371075		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000371100		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000510329	ENST00000371099		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000371102		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000464624		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000510329	ENST00000306120		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000371095		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000371085		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000354359		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000265620		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000510329	ENST00000306090		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-intron	ENST00000510329	ENST00000371081		ChiTaRS3.1			CA433888	NDUFS6	chr5	1816089	-	GNAS	chr20	57485921	-
intron-3UTR	ENST00000216190	ENST00000399537		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000216190	ENST00000430969		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-intron	ENST00000216190	ENST00000399434		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000478547	ENST00000399537		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000478547	ENST00000430969		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-intron	ENST00000478547	ENST00000399434		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000541106	ENST00000399537		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000541106	ENST00000430969		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-intron	ENST00000541106	ENST00000399434		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000405442	ENST00000399537		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-3UTR	ENST00000405442	ENST00000430969		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
intron-intron	ENST00000405442	ENST00000399434		ChiTaRS3.1			BM974825	EIF3D	chr22	36907007	+	TNRC18	chr7	5347525	+
5CDS-intron	ENST00000332050	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000332050	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000332050	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000397938	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000397938	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000397938	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000406548	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000406548	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000406548	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000331029	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000331029	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000331029	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000414183	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000414183	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000414183	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000333395	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000333395	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000333395	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000332035	ENST00000262027		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000332035	ENST00000315473		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-intron	ENST00000332035	ENST00000447721		ChiTaRS3.1			X92120	EWSR1	chr22	29683123	+	MARS	chr12	57911536	-
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM751800	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
Frame-shit	ENST00000261891	ENST00000178640		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000560591		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000395476		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000354498		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000340972		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000457488	ENST00000178640		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000560591		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000395476		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000354498		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000340972		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000558069	ENST00000178640		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000560591		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000395476		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000354498		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000340972		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-3CDS	ENST00000558482	ENST00000178640		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000560591		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000395476		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000354498		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000340972		ChiTaRS3.1			BE464504	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
Frame-shit	ENST00000431231	ENST00000377560		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000431231	ENST00000430131		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000431231	ENST00000550722		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
5CDS-intron	ENST00000431231	ENST00000549141		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000437668	ENST00000377560		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000437668	ENST00000430131		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000437668	ENST00000550722		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
5CDS-intron	ENST00000437668	ENST00000549141		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
intron-3CDS	ENST00000582409	ENST00000377560		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
intron-3CDS	ENST00000582409	ENST00000430131		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
intron-3CDS	ENST00000582409	ENST00000550722		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
intron-intron	ENST00000582409	ENST00000549141		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000443378	ENST00000377560		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000443378	ENST00000430131		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
Frame-shit	ENST00000443378	ENST00000550722		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
5CDS-intron	ENST00000443378	ENST00000549141		ChiTaRS3.1			BE700195	ARHGAP23	chr17	36625863	+	HECTD4	chr12	112631311	-
intron-3UTR	ENST00000256404	ENST00000471727		ChiTaRS3.1			DB089296	PEBP4	chr8	22755229	-	APLF	chr2	68794472	+
intron-3UTR	ENST00000256404	ENST00000303795		ChiTaRS3.1			DB089296	PEBP4	chr8	22755229	-	APLF	chr2	68794472	+
intron-3UTR	ENST00000521284	ENST00000471727		ChiTaRS3.1			DB089296	PEBP4	chr8	22755229	-	APLF	chr2	68794472	+
intron-3UTR	ENST00000521284	ENST00000303795		ChiTaRS3.1			DB089296	PEBP4	chr8	22755229	-	APLF	chr2	68794472	+
intron-3CDS	ENST00000546111	ENST00000304636		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000546111	ENST00000317840		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000535923	ENST00000304636		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000535923	ENST00000317840		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000542912	ENST00000304636		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000542912	ENST00000317840		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000440277	ENST00000304636		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000440277	ENST00000317840		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000399433	ENST00000304636		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000399433	ENST00000317840		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000544134	ENST00000304636		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-3CDS	ENST00000544134	ENST00000317840		ChiTaRS3.1			AI207628	PHB2	chr12	7074796	-	COL3A1	chr2	189873840	+
intron-intron	ENST00000389677	ENST00000313949		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000371098		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000371075		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000371100		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000371099		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000371102		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-3UTR	ENST00000389677	ENST00000464624		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000306120		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000389677	ENST00000371095		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000389677	ENST00000371085		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000389677	ENST00000354359		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000389677	ENST00000265620		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000306090		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000389677	ENST00000371081		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000313949		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000371098		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000371075		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000371100		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000371099		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000371102		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-3UTR	ENST00000538471	ENST00000464624		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000306120		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000538471	ENST00000371095		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000538471	ENST00000371085		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000538471	ENST00000354359		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000538471	ENST00000265620		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000306090		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000538471	ENST00000371081		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000313949		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000371098		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000371075		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000371100		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000371099		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000371102		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-3UTR	ENST00000461803	ENST00000464624		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000306120		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000461803	ENST00000371095		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000461803	ENST00000371085		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000461803	ENST00000354359		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000461803	ENST00000265620		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000306090		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-intron	ENST00000461803	ENST00000371081		ChiTaRS3.1			BF055181	FAXC	chr6	99797378	-	GNAS	chr20	57466766	+
intron-5UTR	ENST00000563294	ENST00000257829		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000563294	ENST00000531159		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000563294	ENST00000527971		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000563294	ENST00000532555		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000442196	ENST00000257829		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000442196	ENST00000531159		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000442196	ENST00000527971		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000442196	ENST00000532555		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000310958	ENST00000257829		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000310958	ENST00000531159		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000310958	ENST00000527971		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000310958	ENST00000532555		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000425574	ENST00000257829		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000425574	ENST00000531159		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000425574	ENST00000527971		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000425574	ENST00000532555		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000569205	ENST00000257829		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-5UTR	ENST00000569205	ENST00000531159		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000569205	ENST00000527971		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-intron	ENST00000569205	ENST00000532555		ChiTaRS3.1			DB293567	CCPG1	chr15	55663727	-	NAT10	chr11	34127170	+
intron-3CDS	ENST00000316084	ENST00000216479		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-intron	ENST00000316084	ENST00000535854		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-intron	ENST00000316084	ENST00000555517		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-3UTR	ENST00000316084	ENST00000555457		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-3CDS	ENST00000486733	ENST00000216479		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-intron	ENST00000486733	ENST00000535854		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-intron	ENST00000486733	ENST00000555517		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-3UTR	ENST00000486733	ENST00000555457		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-3CDS	ENST00000373626	ENST00000216479		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-intron	ENST00000373626	ENST00000535854		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-intron	ENST00000373626	ENST00000555517		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
intron-3UTR	ENST00000373626	ENST00000555457		ChiTaRS3.1			BQ305779	RPS4X	chrX	71494910	-	AHSA1	chr14	77935503	+
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BE780592	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
intron-5UTR	ENST00000431982	ENST00000571816		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000431982	ENST00000572430		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000431982	ENST00000262482		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000431982	ENST00000575111		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-intron	ENST00000431982	ENST00000576229		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-3UTR	ENST00000431982	ENST00000570492		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000413573	ENST00000571816		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000413573	ENST00000572430		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000413573	ENST00000262482		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000413573	ENST00000575111		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-intron	ENST00000413573	ENST00000576229		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-3UTR	ENST00000413573	ENST00000570492		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000252037	ENST00000571816		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000252037	ENST00000572430		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000252037	ENST00000262482		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-5UTR	ENST00000252037	ENST00000575111		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-intron	ENST00000252037	ENST00000576229		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-3UTR	ENST00000252037	ENST00000570492		ChiTaRS3.1			DA679431	FKBP6	chr7	72722427	-	RNF167	chr17	4844166	+
intron-3CDS	ENST00000334256	ENST00000292246		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-3CDS	ENST00000334256	ENST00000350459		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000396091		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000414522		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000451430		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000495772		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-3CDS	ENST00000469804	ENST00000292246		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-3CDS	ENST00000469804	ENST00000350459		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000396091		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000414522		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000451430		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000495772		ChiTaRS3.1			AK001237	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000332629	ENST00000362477		ChiTaRS3.1			BC007768	WDR53	chr3	196281139	-	RNU5E-1	chr5	80533913	-
intron-intron	ENST00000429115	ENST00000362477		ChiTaRS3.1			BC007768	WDR53	chr3	196281139	-	RNU5E-1	chr5	80533913	-
intron-intron	ENST00000433160	ENST00000362477		ChiTaRS3.1			BC007768	WDR53	chr3	196281139	-	RNU5E-1	chr5	80533913	-
5CDS-intron	ENST00000282561	ENST00000262319		ChiTaRS3.1			AB209020	GJA1	chr6	121768404	+	TELO2	chr16	1634264	-
5CDS-intron	ENST00000282561	ENST00000564507		ChiTaRS3.1			AB209020	GJA1	chr6	121768404	+	TELO2	chr16	1634264	-
intron-intron	ENST00000287641	ENST00000402363		ChiTaRS3.1			CA946867	SST	chr3	187386794	+	NASP	chr1	46078920	-
intron-intron	ENST00000287641	ENST00000537798		ChiTaRS3.1			CA946867	SST	chr3	187386794	+	NASP	chr1	46078920	-
intron-intron	ENST00000287641	ENST00000350030		ChiTaRS3.1			CA946867	SST	chr3	187386794	+	NASP	chr1	46078920	-
intron-intron	ENST00000287641	ENST00000372052		ChiTaRS3.1			CA946867	SST	chr3	187386794	+	NASP	chr1	46078920	-
intron-intron	ENST00000287641	ENST00000351223		ChiTaRS3.1			CA946867	SST	chr3	187386794	+	NASP	chr1	46078920	-
intron-intron	ENST00000287641	ENST00000530073		ChiTaRS3.1			CA946867	SST	chr3	187386794	+	NASP	chr1	46078920	-
5CDS-3UTR	ENST00000223357	ENST00000414423		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-3UTR	ENST00000223357	ENST00000295024		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-intron	ENST00000223357	ENST00000366852		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-intron	ENST00000223357	ENST00000479727		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
intron-3UTR	ENST00000454218	ENST00000414423		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
intron-3UTR	ENST00000454218	ENST00000295024		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
intron-intron	ENST00000454218	ENST00000366852		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
intron-intron	ENST00000454218	ENST00000479727		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-3UTR	ENST00000450684	ENST00000414423		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-3UTR	ENST00000450684	ENST00000295024		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-intron	ENST00000450684	ENST00000366852		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
5CDS-intron	ENST00000450684	ENST00000479727		ChiTaRS3.1			CA441028	AEBP1	chr7	44153734	-	WDR26	chr1	224576726	+
intron-3CDS	ENST00000336838	ENST00000491306		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000336838	ENST00000600880		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000336838	ENST00000446558		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000336838	ENST00000456586		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000336838	ENST00000598925		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000336838	ENST00000427280		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000336838	ENST00000441179		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-3CDS	ENST00000263630	ENST00000491306		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000263630	ENST00000600880		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000263630	ENST00000446558		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000263630	ENST00000456586		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000263630	ENST00000598925		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000263630	ENST00000427280		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000263630	ENST00000441179		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-3CDS	ENST00000436346	ENST00000491306		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000436346	ENST00000600880		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000436346	ENST00000446558		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000436346	ENST00000456586		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000436346	ENST00000598925		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000436346	ENST00000427280		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000436346	ENST00000441179		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-3CDS	ENST00000413716	ENST00000491306		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000413716	ENST00000600880		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000413716	ENST00000446558		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000413716	ENST00000456586		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000413716	ENST00000598925		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000413716	ENST00000427280		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000413716	ENST00000441179		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-3CDS	ENST00000422883	ENST00000491306		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000422883	ENST00000600880		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000422883	ENST00000446558		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000422883	ENST00000456586		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000422883	ENST00000598925		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000422883	ENST00000427280		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000422883	ENST00000441179		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-3CDS	ENST00000471947	ENST00000491306		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000471947	ENST00000600880		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000471947	ENST00000446558		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000471947	ENST00000456586		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000471947	ENST00000598925		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000471947	ENST00000427280		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000471947	ENST00000441179		ChiTaRS3.1			AK001254	CCDC88A	chr2	55522937	-	RPL37A	chr2	217366095	+
intron-intron	ENST00000374685	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000374685	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000374685	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000374680	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000374680	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000374680	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000544186	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000544186	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000544186	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000413614	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000413614	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000413614	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000443603	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000443603	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000443603	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000436753	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000436753	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000436753	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000550731	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000550731	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000550731	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000552822	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000552822	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000552822	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000531100	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000531100	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000531100	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000455462	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000455462	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000455462	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000415157	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000415157	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000415157	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000546472	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000546472	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000546472	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000547763	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000547763	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000547763	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000431161	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000431161	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000431161	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000415909	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000415909	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000415909	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000549662	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000549662	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000549662	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000548862	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000548862	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000548862	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000383217	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000383217	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000383217	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000546468	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000546468	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000546468	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000552454	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000552454	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000552454	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000383216	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000383216	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000383216	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000549199	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000549199	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000549199	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000550626	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000550626	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000550626	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000456244	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000456244	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000456244	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000431820	ENST00000525509		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-3UTR	ENST00000431820	ENST00000294258		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
intron-intron	ENST00000431820	ENST00000526791		ChiTaRS3.1			CB052570	RXRB	chr6	4395862	-	ZFPL1	chr11	64855814	+
5CDS-5UTR	ENST00000370179	ENST00000252998		ChiTaRS3.1			DB073936	PPDPF	chr20	62152943	+	RBBP8NL	chr20	60994789	-
5CDS-5UTR	ENST00000370177	ENST00000252998		ChiTaRS3.1			DB073936	PPDPF	chr20	62152943	+	RBBP8NL	chr20	60994789	-
3UTR-5UTR	ENST00000473620	ENST00000252998		ChiTaRS3.1			DB073936	PPDPF	chr20	62152943	+	RBBP8NL	chr20	60994789	-
intron-intron	ENST00000341511	ENST00000340170		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000341511	ENST00000263208		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000341511	ENST00000541063		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-5UTR	ENST00000341511	ENST00000546308		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000341511	ENST00000464189		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000265662	ENST00000340170		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000265662	ENST00000263208		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000265662	ENST00000541063		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-5UTR	ENST00000265662	ENST00000546308		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000265662	ENST00000464189		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000371605	ENST00000340170		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000371605	ENST00000263208		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000371605	ENST00000541063		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-5UTR	ENST00000371605	ENST00000546308		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000371605	ENST00000464189		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000492260	ENST00000340170		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000492260	ENST00000263208		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000492260	ENST00000541063		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-5UTR	ENST00000492260	ENST00000546308		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000492260	ENST00000464189		ChiTaRS3.1			BC072437	ABCA2	chr9	139914928	-	HIRA	chr22	19435043	-
intron-intron	ENST00000328252	ENST00000525943		ChiTaRS3.1			DB057466	PAPPA	chr9	119024501	+	DDX25	chr11	125774403	+
intron-5UTR	ENST00000328252	ENST00000263576		ChiTaRS3.1			DB057466	PAPPA	chr9	119024501	+	DDX25	chr11	125774403	+
intron-intron	ENST00000534838	ENST00000525943		ChiTaRS3.1			DB057466	PAPPA	chr9	119024501	+	DDX25	chr11	125774403	+
intron-5UTR	ENST00000534838	ENST00000263576		ChiTaRS3.1			DB057466	PAPPA	chr9	119024501	+	DDX25	chr11	125774403	+
intron-intron	ENST00000483254	ENST00000525943		ChiTaRS3.1			DB057466	PAPPA	chr9	119024501	+	DDX25	chr11	125774403	+
intron-5UTR	ENST00000483254	ENST00000263576		ChiTaRS3.1			DB057466	PAPPA	chr9	119024501	+	DDX25	chr11	125774403	+
intron-3UTR	ENST00000262428	ENST00000269097		ChiTaRS3.1			BP430643	COTL1	chr16	84599590	-	G6PC3	chr17	42153420	+
intron-3UTR	ENST00000567278	ENST00000269097		ChiTaRS3.1			BP430643	COTL1	chr16	84599590	-	G6PC3	chr17	42153420	+
intron-3UTR	ENST00000564057	ENST00000269097		ChiTaRS3.1			BP430643	COTL1	chr16	84599590	-	G6PC3	chr17	42153420	+
3UTR-3UTR	ENST00000549114	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
3UTR-3UTR	ENST00000549114	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
5CDS-3UTR	ENST00000341413	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
5CDS-3UTR	ENST00000341413	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
3UTR-3UTR	ENST00000564537	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
3UTR-3UTR	ENST00000564537	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
5CDS-3UTR	ENST00000561546	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
5CDS-3UTR	ENST00000561546	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
3UTR-3UTR	ENST00000564545	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
3UTR-3UTR	ENST00000564545	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
5CDS-3UTR	ENST00000389703	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
5CDS-3UTR	ENST00000389703	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
intron-3UTR	ENST00000569604	ENST00000268482		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
intron-3UTR	ENST00000569604	ENST00000536867		ChiTaRS3.1			AB209331	HAGHL	chr16	778868	+	DHX38	chr16	72146677	+
3UTR-3UTR	ENST00000395211	ENST00000261891		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000395211	ENST00000457488		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000395211	ENST00000558069		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000395211	ENST00000558482		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-3UTR	ENST00000259365	ENST00000261891		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000259365	ENST00000457488		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000259365	ENST00000558069		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000259365	ENST00000558482		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-3UTR	ENST00000375175	ENST00000261891		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000375175	ENST00000457488		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000375175	ENST00000558069		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
3UTR-intron	ENST00000375175	ENST00000558482		ChiTaRS3.1			BQ359645	TMOD1	chr9	100363415	-	DAPK2	chr15	64199579	-
intron-intron	ENST00000380794	ENST00000409638		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-5UTR	ENST00000380794	ENST00000396738		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000380794	ENST00000409516		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000380794	ENST00000409260		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000380794	ENST00000486813		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000380794	ENST00000409743		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000405623	ENST00000409638		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-5UTR	ENST00000405623	ENST00000396738		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000405623	ENST00000409516		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000405623	ENST00000409260		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000405623	ENST00000486813		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000405623	ENST00000409743		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000264708	ENST00000409638		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-5UTR	ENST00000264708	ENST00000396738		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000264708	ENST00000409516		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000264708	ENST00000409260		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000264708	ENST00000486813		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000264708	ENST00000409743		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000395826	ENST00000409638		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-5UTR	ENST00000395826	ENST00000396738		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000395826	ENST00000409516		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000395826	ENST00000409260		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000395826	ENST00000486813		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
intron-intron	ENST00000395826	ENST00000409743		ChiTaRS3.1			AV750716	POMC	chr2	25384529	-	STK16	chr2	220110425	+
In-frame	ENST00000418917	ENST00000392302		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000418917	ENST00000368196		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000418917	ENST00000524377		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000418917	ENST00000358660		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
5CDS-intron	ENST00000418917	ENST00000531606		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000490574	ENST00000392302		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000490574	ENST00000368196		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000490574	ENST00000524377		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000490574	ENST00000358660		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
5CDS-intron	ENST00000490574	ENST00000531606		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000240851	ENST00000392302		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000240851	ENST00000368196		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000240851	ENST00000524377		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000240851	ENST00000358660		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
5CDS-intron	ENST00000240851	ENST00000531606		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000476228	ENST00000392302		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000476228	ENST00000368196		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000476228	ENST00000524377		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
In-frame	ENST00000476228	ENST00000358660		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
5CDS-intron	ENST00000476228	ENST00000531606		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000481203	ENST00000392302		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000481203	ENST00000368196		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000481203	ENST00000524377		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000481203	ENST00000358660		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
intron-intron	ENST00000481203	ENST00000531606		ChiTaRS3.1			X85960	TFG	chr3	100451516	+	NTRK1	chr1	156844360	+
5UTR-3UTR	ENST00000334534	ENST00000313949		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-3UTR	ENST00000334534	ENST00000371098		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-3UTR	ENST00000334534	ENST00000371075		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-3UTR	ENST00000334534	ENST00000371100		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000371099		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000371102		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-3UTR	ENST00000334534	ENST00000464624		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000306120		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000371095		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000371085		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000354359		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000265620		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000306090		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-intron	ENST00000334534	ENST00000371081		ChiTaRS3.1			DA038255	SLX4IP	chr20	10416103	+	GNAS	chr20	57470664	+
5UTR-3CDS	ENST00000607062	ENST00000314616		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
5UTR-3CDS	ENST00000607062	ENST00000347486		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
5UTR-3CDS	ENST00000260952	ENST00000314616		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
5UTR-3CDS	ENST00000260952	ENST00000347486		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607535	ENST00000314616		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607535	ENST00000347486		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607690	ENST00000314616		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607690	ENST00000347486		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607829	ENST00000314616		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607829	ENST00000347486		ChiTaRS3.1			BC073963	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
intron-3CDS	ENST00000533141	ENST00000243346		ChiTaRS3.1			CB529308	IFITM2	chr11	309298	-	NMI	chr2	152127296	+
3UTR-3CDS	ENST00000399817	ENST00000243346		ChiTaRS3.1			CB529308	IFITM2	chr11	309298	-	NMI	chr2	152127296	+
3UTR-3CDS	ENST00000602569	ENST00000243346		ChiTaRS3.1			CB529308	IFITM2	chr11	309298	-	NMI	chr2	152127296	+
intron-intron	ENST00000394111	ENST00000438568		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000394111	ENST00000369054		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000394111	ENST00000369064		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000394111	ENST00000606933		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000394111	ENST00000463555		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000258106	ENST00000438568		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000258106	ENST00000369054		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000258106	ENST00000369064		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000258106	ENST00000606933		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
intron-intron	ENST00000258106	ENST00000463555		ChiTaRS3.1			AK092368	EMX1	chr2	73163200	+	TARS2	chr1	150478152	+
In-frame	ENST00000266087	ENST00000306317		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
In-frame	ENST00000266087	ENST00000424267		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
intron-3CDS	ENST00000382058	ENST00000306317		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
intron-3CDS	ENST00000382058	ENST00000424267		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
5UTR-3CDS	ENST00000397426	ENST00000306317		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
5UTR-3CDS	ENST00000397426	ENST00000424267		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
3UTR-3CDS	ENST00000465418	ENST00000306317		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
3UTR-3CDS	ENST00000465418	ENST00000424267		ChiTaRS3.1			BQ719999	FBXO7	chr22	32875028	+	LGI3	chr8	22005870	-
5CDS-intron	ENST00000327490	ENST00000460780		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000327490	ENST00000367318		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000327490	ENST00000367322		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000327490	ENST00000367315		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000327490	ENST00000236918		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000327490	ENST00000360372		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000327490	ENST00000367317		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000327490	ENST00000458432		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000327490	ENST00000421663		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000327490	ENST00000367320		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000327490	ENST00000509001		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000589240	ENST00000460780		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000589240	ENST00000367318		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000589240	ENST00000367322		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000589240	ENST00000367315		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000589240	ENST00000236918		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000589240	ENST00000360372		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-intron	ENST00000589240	ENST00000367317		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000589240	ENST00000458432		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000589240	ENST00000421663		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000589240	ENST00000367320		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
5CDS-5UTR	ENST00000589240	ENST00000509001		ChiTaRS3.1			X79857	UBALD2	chr17	74266445	+	TNNT2	chr1	201346785	-
intron-3CDS	ENST00000548589	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000548589	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000548589	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3UTR	ENST00000548589	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000552699	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000552699	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000552699	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3UTR	ENST00000552699	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000267115	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000267115	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000267115	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3UTR	ENST00000267115	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000549385	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000549385	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3CDS	ENST00000549385	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
5UTR-3UTR	ENST00000549385	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000423828	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000423828	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000423828	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3UTR	ENST00000423828	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000395006	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000395006	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000395006	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3UTR	ENST00000395006	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000547798	ENST00000392329		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000547798	ENST00000322522		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3CDS	ENST00000547798	ENST00000541441		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-3UTR	ENST00000547798	ENST00000417336		ChiTaRS3.1			CK001646	TMBIM6	chr12	50135395	+	INPP1	chr2	191231419	+
intron-intron	ENST00000602624	ENST00000263370		ChiTaRS3.1			BF572086	DDOST	chr1	20978985	-	ITPKC	chr19	41227551	+
intron-intron	ENST00000375048	ENST00000263370		ChiTaRS3.1			BF572086	DDOST	chr1	20978985	-	ITPKC	chr19	41227551	+
intron-intron	ENST00000415136	ENST00000263370		ChiTaRS3.1			BF572086	DDOST	chr1	20978985	-	ITPKC	chr19	41227551	+
intron-intron	ENST00000477229	ENST00000263370		ChiTaRS3.1			BF572086	DDOST	chr1	20978985	-	ITPKC	chr19	41227551	+
Frame-shit	ENST00000344749	ENST00000420696		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000401534		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000559240		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000367897		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000344749	ENST00000540236		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000344749	ENST00000560641		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000344749	ENST00000474046		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000344749	ENST00000485769		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000344749	ENST00000540246		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000420696		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000401534		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000559240		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000367897		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000262965	ENST00000540236		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000262965	ENST00000560641		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000262965	ENST00000474046		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000262965	ENST00000485769		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000262965	ENST00000540246		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000420696		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000401534		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000559240		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000367897		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000453954	ENST00000540236		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000453954	ENST00000560641		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000453954	ENST00000474046		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000453954	ENST00000485769		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000453954	ENST00000540246		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000420696		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000401534		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000559240		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000367897		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
In-frame	ENST00000395423	ENST00000540236		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000395423	ENST00000560641		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000395423	ENST00000474046		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000395423	ENST00000485769		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000395423	ENST00000540246		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000420696		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000401534		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000559240		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000367897		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
Frame-shit	ENST00000588136	ENST00000540236		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-5UTR	ENST00000588136	ENST00000560641		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000588136	ENST00000474046		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000588136	ENST00000485769		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
5CDS-intron	ENST00000588136	ENST00000540246		ChiTaRS3.1			M31522	TCF3	chr19	1619110	-	PBX1	chr1	164761730	+
intron-intron	ENST00000375820	ENST00000482728		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000375820	ENST00000307106		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000375820	ENST00000477703		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000375820	ENST00000476842		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000543140	ENST00000482728		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000543140	ENST00000307106		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000543140	ENST00000477703		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000543140	ENST00000476842		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000467182	ENST00000482728		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000467182	ENST00000307106		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000467182	ENST00000477703		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000467182	ENST00000476842		ChiTaRS3.1			AK000903	COL4A1	chr13	110885115	-	SMIM4	chr3	52570821	+
intron-intron	ENST00000372583	ENST00000260649		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000409387		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000410056		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000409741		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000409229		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000409380		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000409294		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372583	ENST00000409740		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000260649		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000409387		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000410056		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000409741		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000409229		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000409380		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000409294		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000372584	ENST00000409740		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000260649		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000409387		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000410056		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000409741		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000409229		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000409380		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000409294		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000247584	ENST00000409740		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000260649		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000409387		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000410056		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000409741		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000409229		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000409380		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000409294		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000429157	ENST00000409740		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000260649		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000409387		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000410056		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000409741		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000409229		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000409380		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000409294		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
intron-intron	ENST00000460604	ENST00000409740		ChiTaRS3.1			AI830739	HIVEP3	chr1	42489017	+	SLC3A1	chr2	44545901	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW891969	MALAT1	chr11	65266665	-	MALAT1	chr11	65266675	+
intron-intron	ENST00000419277	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000428995	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000463066	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000443117	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000551196	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000480521	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000415247	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000484255	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000454805	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000549300	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000475500	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000374808	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000552158	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000488565	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000383224	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000551933	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000474244	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000422504	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000550806	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000494775	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000515317	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000550456	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
intron-intron	ENST00000502285	ENST00000384994		ChiTaRS3.1			DB013913	HLA-DPA1	chr6	4517495	-	NEAT1	chr11	65191168	+
5CDS-5UTR	ENST00000362512	ENST00000319167		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
5CDS-5UTR	ENST00000362512	ENST00000173898		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
5CDS-5UTR	ENST00000362512	ENST00000399736		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
5CDS-5UTR	ENST00000362512	ENST00000375022		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
5CDS-5UTR	ENST00000362512	ENST00000484031		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
5CDS-5UTR	ENST00000362512	ENST00000420798		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
5CDS-intron	ENST00000362512	ENST00000375041		ChiTaRS3.1			DA801105	RNU12	chr22	43011400	+	TRO	chrX	54947257	+
3UTR-3CDS	ENST00000534336	ENST00000374798		ChiTaRS3.1			BQ428924	MALAT1	chr11	65267535	+	CYLC2	chr9	105767419	+
3UTR-3CDS	ENST00000534336	ENST00000487798		ChiTaRS3.1			BQ428924	MALAT1	chr11	65267535	+	CYLC2	chr9	105767419	+
3UTR-intron	ENST00000534336	ENST00000590560		ChiTaRS3.1			BQ428924	MALAT1	chr11	65267535	+	CYLC2	chr9	105767419	+
intron-3CDS	ENST00000357736	ENST00000354546		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000357736	ENST00000523714		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000357736	ENST00000356496		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000357736	ENST00000377751		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000357736	ENST00000521512		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000357736	ENST00000519610		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000392366	ENST00000354546		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000392366	ENST00000523714		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-3CDS	ENST00000392366	ENST00000356496		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000392366	ENST00000377751		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000392366	ENST00000521512		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-intron	ENST00000392366	ENST00000519610		ChiTaRS3.1			AI306131	MAFG	chr17	79879648	+	ANXA6	chr5	150507772	+
intron-5UTR	ENST00000476844	ENST00000536769		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000476844	ENST00000538617		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000476844	ENST00000546120		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000476844	ENST00000339647		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000476844	ENST00000536661		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000492590	ENST00000536769		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000492590	ENST00000538617		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000492590	ENST00000546120		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000492590	ENST00000339647		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000492590	ENST00000536661		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000466788	ENST00000536769		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000466788	ENST00000538617		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000466788	ENST00000546120		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000466788	ENST00000339647		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000466788	ENST00000536661		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000468189	ENST00000536769		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000468189	ENST00000538617		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000468189	ENST00000546120		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000468189	ENST00000339647		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000468189	ENST00000536661		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000341848	ENST00000536769		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000341848	ENST00000538617		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000341848	ENST00000546120		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000341848	ENST00000339647		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-5UTR	ENST00000341848	ENST00000536661		ChiTaRS3.1			DA646434	FHIT	chr3	60336858	-	UBC	chr12	125399198	-
intron-3CDS	ENST00000246190	ENST00000052754		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000425043		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000393155		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000228329		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000303320		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000552962		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000441303		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000420120		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000547568		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000456569		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000546370		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000546745		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000550099		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000551354		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000246190	ENST00000548768		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-3CDS	ENST00000375238	ENST00000052754		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000425043		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000393155		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000228329		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000303320		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000552962		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000441303		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000420120		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000547568		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000456569		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000546370		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000546745		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000550099		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000551354		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000375238	ENST00000548768		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-3CDS	ENST00000606525	ENST00000052754		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000425043		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000393155		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000228329		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000303320		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000552962		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000441303		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000420120		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000547568		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000456569		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000546370		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000546745		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000550099		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000551354		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
intron-intron	ENST00000606525	ENST00000548768		ChiTaRS3.1			BG927599	NECAB3	chr20	32261363	-	DCN	chr12	91558472	-
5UTR-intron	ENST00000545339	ENST00000491614		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
5UTR-intron	ENST00000545339	ENST00000378937		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
5UTR-intron	ENST00000545339	ENST00000537776		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
5UTR-intron	ENST00000545339	ENST00000378952		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
5UTR-intron	ENST00000545339	ENST00000378940		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
5UTR-intron	ENST00000545339	ENST00000378927		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
intron-intron	ENST00000399492	ENST00000491614		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
intron-intron	ENST00000399492	ENST00000378937		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
intron-intron	ENST00000399492	ENST00000537776		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
intron-intron	ENST00000399492	ENST00000378952		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
intron-intron	ENST00000399492	ENST00000378940		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
intron-intron	ENST00000399492	ENST00000378927		ChiTaRS3.1			BU857456	CD27-AS1	chr12	6559509	-	NUDT5	chr10	12231916	+
5CDS-3UTR	ENST00000541428	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000541428	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000541428	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000379454	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000379454	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000379454	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-3UTR	ENST00000523897	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-intron	ENST00000523897	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-intron	ENST00000523897	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-3UTR	ENST00000522919	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-intron	ENST00000522919	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-intron	ENST00000522919	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000356457	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000356457	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000356457	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000518068	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000518068	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000518068	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000517903	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517903	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517903	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000445642	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000445642	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000445642	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000517847	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517847	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517847	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000522835	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000522835	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000522835	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000517856	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517856	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517856	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000389204	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000389204	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000389204	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000522603	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000522603	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000522603	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000379449	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000379449	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000379449	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-3UTR	ENST00000517661	ENST00000355653		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517661	ENST00000587173		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
5CDS-intron	ENST00000517661	ENST00000420567		ChiTaRS3.1			DW407831	ASPH	chr8	62596603	-	VAT1	chr17	41166895	-
intron-intron	ENST00000396836	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
5CDS-intron	ENST00000396834	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
5CDS-intron	ENST00000447346	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
5CDS-intron	ENST00000359040	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
intron-intron	ENST00000297015	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
5CDS-intron	ENST00000490985	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
5CDS-intron	ENST00000354961	ENST00000347055		ChiTaRS3.1			AF106913	IL31RA	chr5	55206445	+	KRCC1	chr2	88328304	-
5UTR-3CDS	ENST00000370113	ENST00000341653		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000370113	ENST00000358402		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370113	ENST00000555932		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370113	ENST00000284165		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370113	ENST00000358664		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370113	ENST00000555419		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370113	ENST00000557277		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370113	ENST00000556979		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370113	ENST00000555667		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370113	ENST00000557746		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370113	ENST00000556443		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370113	ENST00000246163		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000370114	ENST00000341653		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000370114	ENST00000358402		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370114	ENST00000555932		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370114	ENST00000284165		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370114	ENST00000358664		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000370114	ENST00000555419		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370114	ENST00000557277		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370114	ENST00000556979		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370114	ENST00000555667		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370114	ENST00000557746		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370114	ENST00000556443		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000370114	ENST00000246163		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000535414	ENST00000341653		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000535414	ENST00000358402		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000535414	ENST00000555932		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000535414	ENST00000284165		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000535414	ENST00000358664		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000535414	ENST00000555419		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000535414	ENST00000557277		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000535414	ENST00000556979		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000535414	ENST00000555667		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000535414	ENST00000557746		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000535414	ENST00000556443		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000535414	ENST00000246163		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000480774	ENST00000341653		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-3CDS	ENST00000480774	ENST00000358402		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000480774	ENST00000555932		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000480774	ENST00000284165		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000480774	ENST00000358664		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-intron	ENST00000480774	ENST00000555419		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000480774	ENST00000557277		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000480774	ENST00000556979		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000480774	ENST00000555667		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000480774	ENST00000557746		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000480774	ENST00000556443		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
5UTR-5UTR	ENST00000480774	ENST00000246163		ChiTaRS3.1			DA644341	EXTL2	chr1	101360188	-	MAX	chr14	65560535	-
3UTR-3CDS	ENST00000534336	ENST00000254508		ChiTaRS3.1			AW867470	MALAT1	chr11	65268673	+	NUP210	chr3	13368810	-
3UTR-intron	ENST00000534336	ENST00000485755		ChiTaRS3.1			AW867470	MALAT1	chr11	65268673	+	NUP210	chr3	13368810	-
intron-3UTR	ENST00000332408	ENST00000402225		ChiTaRS3.1			BU625857	SHC4	chr15	49171511	-	STAG3L1	chr7	74993983	-
intron-3UTR	ENST00000396535	ENST00000402225		ChiTaRS3.1			BU625857	SHC4	chr15	49171511	-	STAG3L1	chr7	74993983	-
intron-3UTR	ENST00000537958	ENST00000402225		ChiTaRS3.1			BU625857	SHC4	chr15	49171511	-	STAG3L1	chr7	74993983	-
intron-3CDS	ENST00000397887	ENST00000308317		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397887	ENST00000396249		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397887	ENST00000250379		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000330938	ENST00000308317		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000330938	ENST00000396249		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000330938	ENST00000250379		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000445724	ENST00000308317		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000445724	ENST00000396249		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000445724	ENST00000250379		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397886	ENST00000308317		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397886	ENST00000396249		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397886	ENST00000250379		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000494690	ENST00000308317		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000494690	ENST00000396249		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000494690	ENST00000250379		ChiTaRS3.1			BF804041	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
5UTR-3CDS	ENST00000401950	ENST00000205948		ChiTaRS3.1			BG824141	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-3CDS	ENST00000333027	ENST00000205948		ChiTaRS3.1			BG824141	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-3CDS	ENST00000323630	ENST00000205948		ChiTaRS3.1			BG824141	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
5UTR-3CDS	ENST00000351488	ENST00000205948		ChiTaRS3.1			BG824141	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
intron-3CDS	ENST00000406629	ENST00000205948		ChiTaRS3.1			BG824141	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
3UTR-3CDS	ENST00000415511	ENST00000205948		ChiTaRS3.1			BG824141	MTMR3	chr22	30279348	+	APOH	chr17	64225541	-
3UTR-5UTR	ENST00000415430	ENST00000531188		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000415430	ENST00000530164		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000278572		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000534440		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000527446		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000526608		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000524851		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000529285		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000531188		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000530164		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000278572		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000534440		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000527446		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000526608		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000524851		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000529285		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000531188		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000530164		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000278572		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000534440		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000527446		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000526608		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000524851		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000529285		ChiTaRS3.1			BM823567	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
Frame-shit	ENST00000301740	ENST00000224167		ChiTaRS3.1			Z17825	SRRM2	chr16	2813449	+	PTGDS	chr9	139871956	+
Frame-shit	ENST00000301740	ENST00000371625		ChiTaRS3.1			Z17825	SRRM2	chr16	2813449	+	PTGDS	chr9	139871956	+
5CDS-intron	ENST00000301740	ENST00000460340		ChiTaRS3.1			Z17825	SRRM2	chr16	2813449	+	PTGDS	chr9	139871956	+
intron-3CDS	ENST00000574593	ENST00000224167		ChiTaRS3.1			Z17825	SRRM2	chr16	2813449	+	PTGDS	chr9	139871956	+
intron-3CDS	ENST00000574593	ENST00000371625		ChiTaRS3.1			Z17825	SRRM2	chr16	2813449	+	PTGDS	chr9	139871956	+
intron-intron	ENST00000574593	ENST00000460340		ChiTaRS3.1			Z17825	SRRM2	chr16	2813449	+	PTGDS	chr9	139871956	+
5CDS-3UTR	ENST00000531120	ENST00000324379		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
5CDS-intron	ENST00000531120	ENST00000356511		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
5CDS-intron	ENST00000531120	ENST00000470213		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
5CDS-intron	ENST00000531120	ENST00000372830		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
5CDS-intron	ENST00000531120	ENST00000480169		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
intron-3UTR	ENST00000524896	ENST00000324379		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
intron-intron	ENST00000524896	ENST00000356511		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
intron-intron	ENST00000524896	ENST00000470213		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
intron-intron	ENST00000524896	ENST00000372830		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
intron-intron	ENST00000524896	ENST00000480169		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
3UTR-3UTR	ENST00000532054	ENST00000324379		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
3UTR-intron	ENST00000532054	ENST00000356511		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
3UTR-intron	ENST00000532054	ENST00000470213		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
3UTR-intron	ENST00000532054	ENST00000372830		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
3UTR-intron	ENST00000532054	ENST00000480169		ChiTaRS3.1			BP428638	EIF3M	chr11	32608616	+	PPIE	chr1	40219177	+
In-frame	ENST00000534863	ENST00000421307		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000534863	ENST00000354379		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000534863	ENST00000336686		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000534863	ENST00000421276		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000534863	ENST00000396428		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000534863	ENST00000440230		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
5CDS-intron	ENST00000534863	ENST00000490597		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000470751	ENST00000421307		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000470751	ENST00000354379		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000470751	ENST00000336686		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000470751	ENST00000421276		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000470751	ENST00000396428		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000470751	ENST00000440230		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-intron	ENST00000470751	ENST00000490597		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000272902	ENST00000421307		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000272902	ENST00000354379		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000272902	ENST00000336686		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000272902	ENST00000421276		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000272902	ENST00000396428		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000272902	ENST00000440230		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
5CDS-intron	ENST00000272902	ENST00000490597		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000383843	ENST00000421307		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000383843	ENST00000354379		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000383843	ENST00000336686		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000383843	ENST00000421276		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000383843	ENST00000396428		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000383843	ENST00000440230		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
5CDS-intron	ENST00000383843	ENST00000490597		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000458465	ENST00000421307		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000458465	ENST00000354379		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000458465	ENST00000336686		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000458465	ENST00000421276		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000458465	ENST00000396428		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
In-frame	ENST00000458465	ENST00000440230		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
5CDS-intron	ENST00000458465	ENST00000490597		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000405420	ENST00000421307		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000405420	ENST00000354379		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000405420	ENST00000336686		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000405420	ENST00000421276		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000405420	ENST00000396428		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000405420	ENST00000440230		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-intron	ENST00000405420	ENST00000490597		ChiTaRS3.1			XX000010	SUMF1	chr3	4418013	-	LRRFIP2	chr3	37170641	-
intron-3CDS	ENST00000285274	ENST00000356166		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-5UTR	ENST00000285274	ENST00000568722		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-3UTR	ENST00000285274	ENST00000482749		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-intron	ENST00000285274	ENST00000395073		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-intron	ENST00000285274	ENST00000287468		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-3CDS	ENST00000545289	ENST00000356166		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-5UTR	ENST00000545289	ENST00000568722		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-3UTR	ENST00000545289	ENST00000482749		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-intron	ENST00000545289	ENST00000395073		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-intron	ENST00000545289	ENST00000287468		ChiTaRS3.1			AI566787	ZNF286B	chr17	18581100	-	FBRS	chr16	30674105	-
intron-3UTR	ENST00000597252	ENST00000229239		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597252	ENST00000396856		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597252	ENST00000396861		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597252	ENST00000396859		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-intron	ENST00000597252	ENST00000396858		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000322146	ENST00000229239		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000322146	ENST00000396856		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000322146	ENST00000396861		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000322146	ENST00000396859		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-intron	ENST00000322146	ENST00000396858		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597065	ENST00000229239		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597065	ENST00000396856		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597065	ENST00000396861		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000597065	ENST00000396859		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-intron	ENST00000597065	ENST00000396858		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000602187	ENST00000229239		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000602187	ENST00000396856		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000602187	ENST00000396861		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-3UTR	ENST00000602187	ENST00000396859		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-intron	ENST00000602187	ENST00000396858		ChiTaRS3.1			DB548780	ZNF836	chr19	52659282	-	GAPDH	chr12	6647484	+
intron-intron	ENST00000261497	ENST00000338193		ChiTaRS3.1			AL162082	USP22	chr17	20904261	-	PRIM1	chr12	57127507	-
intron-intron	ENST00000261497	ENST00000552408		ChiTaRS3.1			AL162082	USP22	chr17	20904261	-	PRIM1	chr12	57127507	-
intron-intron	ENST00000537526	ENST00000338193		ChiTaRS3.1			AL162082	USP22	chr17	20904261	-	PRIM1	chr12	57127507	-
intron-intron	ENST00000537526	ENST00000552408		ChiTaRS3.1			AL162082	USP22	chr17	20904261	-	PRIM1	chr12	57127507	-
intron-intron	ENST00000455117	ENST00000338193		ChiTaRS3.1			AL162082	USP22	chr17	20904261	-	PRIM1	chr12	57127507	-
intron-intron	ENST00000455117	ENST00000552408		ChiTaRS3.1			AL162082	USP22	chr17	20904261	-	PRIM1	chr12	57127507	-
intron-3CDS	ENST00000377869	ENST00000268296		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000377869	ENST00000562918		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000377869	ENST00000562522		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-3CDS	ENST00000220616	ENST00000268296		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000220616	ENST00000562918		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000220616	ENST00000562522		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-3CDS	ENST00000542445	ENST00000268296		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000542445	ENST00000562918		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000542445	ENST00000562522		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-3CDS	ENST00000519543	ENST00000268296		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000519543	ENST00000562918		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000519543	ENST00000562522		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-3CDS	ENST00000522523	ENST00000268296		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000522523	ENST00000562918		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
intron-intron	ENST00000522523	ENST00000562522		ChiTaRS3.1			BF810597	TG	chr8	134054639	-	ITGAX	chr16	31384629	+
5CDS-intron	ENST00000359907	ENST00000315677		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000581527		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000400147		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000400149		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000400155		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000400150		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000584874		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000534970		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000539435		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000581699		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000400145		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000515196		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
5CDS-intron	ENST00000359907	ENST00000478161		ChiTaRS3.1			BM749204	HIST1H4A	chr6	26022275	+	DLGAP1	chr18	4159732	-
3UTR-3UTR	ENST00000305883	ENST00000515408		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-3UTR	ENST00000305883	ENST00000389063		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-intron	ENST00000305883	ENST00000543319		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-intron	ENST00000305883	ENST00000504961		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-3UTR	ENST00000540845	ENST00000515408		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-3UTR	ENST00000540845	ENST00000389063		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-intron	ENST00000540845	ENST00000543319		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-intron	ENST00000540845	ENST00000504961		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-3UTR	ENST00000535335	ENST00000515408		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-3UTR	ENST00000535335	ENST00000389063		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-intron	ENST00000535335	ENST00000543319		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
3UTR-intron	ENST00000535335	ENST00000504961		ChiTaRS3.1			AK025019	KLF11	chr2	10193878	+	DCP2	chr5	112354215	+
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BQ680164	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BQ680164	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
intron-3CDS	ENST00000255030	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000255030	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000255030	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000473196	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000473196	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000473196	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000437342	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000437342	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000437342	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368112	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368112	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368112	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368111	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368111	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368111	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368110	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368110	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000368110	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000343919	ENST00000478753		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000343919	ENST00000542752		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-3CDS	ENST00000343919	ENST00000500504		ChiTaRS3.1			AA344463	CRP	chr1	159683023	-	SEPHS2	chr16	30456377	-
intron-intron	ENST00000356929	ENST00000377050		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-intron	ENST00000356929	ENST00000414436		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-intron	ENST00000356929	ENST00000432676		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-3UTR	ENST00000356929	ENST00000421519		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-3UTR	ENST00000356929	ENST00000383547		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-3UTR	ENST00000356929	ENST00000383641		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-3UTR	ENST00000356929	ENST00000429935		ChiTaRS3.1			BG055615	ZNF708	chr19	21474095	-	UBD	chr6	826777	-
intron-3CDS	ENST00000330978	ENST00000336273		ChiTaRS3.1			AI380636	BOLA2	chr16	29460998	-	MTDH	chr8	98718877	-
intron-3CDS	ENST00000330978	ENST00000519934		ChiTaRS3.1			AI380636	BOLA2	chr16	29460998	-	MTDH	chr8	98718877	-
intron-3CDS	ENST00000486901	ENST00000413052		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3CDS	ENST00000486901	ENST00000369645		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-intron	ENST00000486901	ENST00000544796		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-intron	ENST00000486901	ENST00000369644		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3UTR	ENST00000486901	ENST00000468624		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3UTR	ENST00000486901	ENST00000357443		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3CDS	ENST00000374695	ENST00000413052		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3CDS	ENST00000374695	ENST00000369645		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-intron	ENST00000374695	ENST00000544796		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-intron	ENST00000374695	ENST00000369644		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3UTR	ENST00000374695	ENST00000468624		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3UTR	ENST00000374695	ENST00000357443		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3CDS	ENST00000430507	ENST00000413052		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3CDS	ENST00000430507	ENST00000369645		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-intron	ENST00000430507	ENST00000544796		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-intron	ENST00000430507	ENST00000369644		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3UTR	ENST00000430507	ENST00000468624		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
intron-3UTR	ENST00000430507	ENST00000357443		ChiTaRS3.1			CD676182	HSPG2	chr1	22212789	-	MOV10	chr1	113242372	+
Frame-shit	ENST00000521662	ENST00000356352		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000357604		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521662	ENST00000397053		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521662	ENST00000460569		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000356352		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000357604		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000521688	ENST00000397053		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000521688	ENST00000460569		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000356352		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000357604		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
Frame-shit	ENST00000520147	ENST00000397053		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
5CDS-5UTR	ENST00000520147	ENST00000460569		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000356352		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000357604		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-3CDS	ENST00000522407	ENST00000397053		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
3UTR-5UTR	ENST00000522407	ENST00000460569		ChiTaRS3.1			BU570150	ENY2	chr8	110352793	+	UPF2	chr10	12077182	-
intron-intron	ENST00000305978	ENST00000265260		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000305978	ENST00000469941		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000305978	ENST00000296024		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000305978	ENST00000486406		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000373991	ENST00000265260		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000373991	ENST00000469941		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000373991	ENST00000296024		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
intron-intron	ENST00000373991	ENST00000486406		ChiTaRS3.1			BU566891	SCAND1	chr20	34541994	-	PCNP	chr3	101295374	-
5CDS-5UTR	ENST00000427191	ENST00000301071		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000427191	ENST00000295766		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000427191	ENST00000550767		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000427191	ENST00000546918		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-5UTR	ENST00000436978	ENST00000301071		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000436978	ENST00000295766		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000436978	ENST00000550767		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000436978	ENST00000546918		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
intron-5UTR	ENST00000502971	ENST00000301071		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
intron-intron	ENST00000502971	ENST00000295766		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
intron-intron	ENST00000502971	ENST00000550767		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
intron-intron	ENST00000502971	ENST00000546918		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-5UTR	ENST00000411767	ENST00000301071		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000411767	ENST00000295766		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000411767	ENST00000550767		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000411767	ENST00000546918		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-5UTR	ENST00000316707	ENST00000301071		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000316707	ENST00000295766		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000316707	ENST00000550767		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000316707	ENST00000546918		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-5UTR	ENST00000511467	ENST00000301071		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000511467	ENST00000295766		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000511467	ENST00000550767		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
5CDS-intron	ENST00000511467	ENST00000546918		ChiTaRS3.1			AU099292	PTPN13	chr4	87622475	+	TUBA1A	chr12	49582861	-
intron-3CDS	ENST00000539317	ENST00000540468		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000539919		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000258091		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000398422		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000537131		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000538797		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000539317	ENST00000473786		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000540468		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000539919		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000258091		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000398422		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000537131		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000538797		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000487871	ENST00000473786		ChiTaRS3.1			BM423518	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
Frame-shit	ENST00000552912	ENST00000397128		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
Frame-shit	ENST00000552912	ENST00000354209		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
Frame-shit	ENST00000552912	ENST00000296800		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
Frame-shit	ENST00000242591	ENST00000397128		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
Frame-shit	ENST00000242591	ENST00000354209		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
Frame-shit	ENST00000242591	ENST00000296800		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-3CDS	ENST00000361948	ENST00000397128		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-3CDS	ENST00000361948	ENST00000354209		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-3CDS	ENST00000361948	ENST00000296800		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-3CDS	ENST00000549009	ENST00000397128		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-3CDS	ENST00000549009	ENST00000354209		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-3CDS	ENST00000549009	ENST00000296800		ChiTaRS3.1			DA340341	IFT81	chr12	110641758	+	PRKAA1	chr5	40775608	-
intron-intron	ENST00000316403	ENST00000262948		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000316403	ENST00000394867		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000316403	ENST00000599345		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000546343	ENST00000262948		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000546343	ENST00000394867		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000546343	ENST00000599345		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000560366	ENST00000262948		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000560366	ENST00000394867		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000560366	ENST00000599345		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000405140	ENST00000262948		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000405140	ENST00000394867		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000405140	ENST00000599345		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000523500	ENST00000262948		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000523500	ENST00000394867		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
intron-intron	ENST00000523500	ENST00000599345		ChiTaRS3.1			BF919979	CLU	chr8	27466480	-	MAP2K2	chr19	4102495	-
5CDS-5UTR	ENST00000360540	ENST00000378454		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-intron	ENST00000360540	ENST00000378450		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-5UTR	ENST00000544451	ENST00000378454		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-intron	ENST00000544451	ENST00000378450		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5UTR-5UTR	ENST00000519559	ENST00000378454		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5UTR-intron	ENST00000519559	ENST00000378450		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-5UTR	ENST00000522514	ENST00000378454		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-intron	ENST00000522514	ENST00000378450		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-5UTR	ENST00000521344	ENST00000378454		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-intron	ENST00000521344	ENST00000378450		ChiTaRS3.1			BG751895	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
3UTR-3CDS	ENST00000472174	ENST00000220764		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
3UTR-intron	ENST00000472174	ENST00000519007		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
3UTR-intron	ENST00000472174	ENST00000522161		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-3CDS	ENST00000532642	ENST00000220764		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-intron	ENST00000532642	ENST00000519007		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-intron	ENST00000532642	ENST00000522161		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
In-frame	ENST00000236067	ENST00000220764		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
5CDS-intron	ENST00000236067	ENST00000519007		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
5CDS-intron	ENST00000236067	ENST00000522161		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-3CDS	ENST00000471859	ENST00000220764		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-intron	ENST00000471859	ENST00000519007		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-intron	ENST00000471859	ENST00000522161		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-3CDS	ENST00000472277	ENST00000220764		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-intron	ENST00000472277	ENST00000519007		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-intron	ENST00000472277	ENST00000522161		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
3UTR-3CDS	ENST00000498664	ENST00000220764		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
3UTR-intron	ENST00000498664	ENST00000519007		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
3UTR-intron	ENST00000498664	ENST00000522161		ChiTaRS3.1			BQ306273	ATP6V0B	chr1	44443958	+	DECR1	chr8	91063913	+
intron-3CDS	ENST00000370801	ENST00000451516		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-3CDS	ENST00000370801	ENST00000334414		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370801	ENST00000550358		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370801	ENST00000538708		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370801	ENST00000550857		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370801	ENST00000261266		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370801	ENST00000551525		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370801	ENST00000538174		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-3CDS	ENST00000370798	ENST00000451516		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-3CDS	ENST00000370798	ENST00000334414		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370798	ENST00000550358		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370798	ENST00000538708		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370798	ENST00000550857		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370798	ENST00000261266		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370798	ENST00000551525		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000370798	ENST00000538174		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-3CDS	ENST00000476275	ENST00000451516		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-3CDS	ENST00000476275	ENST00000334414		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000476275	ENST00000550358		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000476275	ENST00000538708		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000476275	ENST00000550857		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000476275	ENST00000261266		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000476275	ENST00000551525		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
intron-intron	ENST00000476275	ENST00000538174		ChiTaRS3.1			DA854786	ZZZ3	chr1	78079818	-	PTPRB	chr12	70970216	-
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			E07332	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BU183447	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BU183447	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
intron-3CDS	ENST00000334418	ENST00000535572		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-3CDS	ENST00000334418	ENST00000537687		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-3CDS	ENST00000334418	ENST00000315939		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000334418	ENST00000447667		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000334418	ENST00000530271		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000334418	ENST00000540360		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000334418	ENST00000340908		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000334418	ENST00000574564		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-3CDS	ENST00000580556	ENST00000535572		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-3CDS	ENST00000580556	ENST00000537687		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-3CDS	ENST00000580556	ENST00000315939		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000580556	ENST00000447667		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000580556	ENST00000530271		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000580556	ENST00000540360		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000580556	ENST00000340908		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-intron	ENST00000580556	ENST00000574564		ChiTaRS3.1			AI671743	CCDC84	chr11	118886466	+	WNK1	chr12	994861	-
intron-5UTR	ENST00000464233	ENST00000311268		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000464233	ENST00000428545		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-3UTR	ENST00000464233	ENST00000541431		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-intron	ENST00000464233	ENST00000382315		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000436010	ENST00000311268		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000436010	ENST00000428545		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-3UTR	ENST00000436010	ENST00000541431		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-intron	ENST00000436010	ENST00000382315		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000495273	ENST00000311268		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000495273	ENST00000428545		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-3UTR	ENST00000495273	ENST00000541431		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-intron	ENST00000495273	ENST00000382315		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000467549	ENST00000311268		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000467549	ENST00000428545		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-3UTR	ENST00000467549	ENST00000541431		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-intron	ENST00000467549	ENST00000382315		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000466906	ENST00000311268		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-5UTR	ENST00000466906	ENST00000428545		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-3UTR	ENST00000466906	ENST00000541431		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-intron	ENST00000466906	ENST00000382315		ChiTaRS3.1			DA769291	ROBO1	chr3	79068483	-	GPR162	chr12	6932783	+
intron-3UTR	ENST00000527673	ENST00000372806		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000527673	ENST00000396731		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000527673	ENST00000372801		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000527673	ENST00000499879		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000527673	ENST00000487587		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-3UTR	ENST00000528547	ENST00000372806		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000528547	ENST00000396731		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000528547	ENST00000372801		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000528547	ENST00000499879		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000528547	ENST00000487587		ChiTaRS3.1			BP271042	RPS25	chr11	118888201	-	STK4	chr20	43707835	+
intron-intron	ENST00000330978	ENST00000371720		ChiTaRS3.1			BE937971	BOLA2	chr16	30129814	-	PMPCA	chr9	139316289	+
intron-intron	ENST00000330978	ENST00000371717		ChiTaRS3.1			BE937971	BOLA2	chr16	30129814	-	PMPCA	chr9	139316289	+
intron-intron	ENST00000330978	ENST00000399219		ChiTaRS3.1			BE937971	BOLA2	chr16	30129814	-	PMPCA	chr9	139316289	+
intron-intron	ENST00000330978	ENST00000462616		ChiTaRS3.1			BE937971	BOLA2	chr16	30129814	-	PMPCA	chr9	139316289	+
5CDS-3UTR	ENST00000312917	ENST00000228495		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000312917	ENST00000540089		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000312917	ENST00000424763		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000312917	ENST00000538161		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000312917	ENST00000540411		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-3UTR	ENST00000388715	ENST00000228495		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000388715	ENST00000540089		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000388715	ENST00000424763		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000388715	ENST00000538161		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000388715	ENST00000540411		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-3UTR	ENST00000394571	ENST00000228495		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000394571	ENST00000540089		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000394571	ENST00000424763		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000394571	ENST00000538161		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
5CDS-intron	ENST00000394571	ENST00000540411		ChiTaRS3.1			BG218677	PNPLA1	chr6	36275488	+	KCTD10	chr12	109887290	-
In-frame	ENST00000311550	ENST00000396153		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
In-frame	ENST00000311550	ENST00000371778		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5CDS-intron	ENST00000311550	ENST00000545823		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5CDS-intron	ENST00000311550	ENST00000472808		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
In-frame	ENST00000541819	ENST00000396153		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
In-frame	ENST00000541819	ENST00000371778		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5CDS-intron	ENST00000541819	ENST00000545823		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5CDS-intron	ENST00000541819	ENST00000472808		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
In-frame	ENST00000299267	ENST00000396153		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
In-frame	ENST00000299267	ENST00000371778		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5CDS-intron	ENST00000299267	ENST00000545823		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5CDS-intron	ENST00000299267	ENST00000472808		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-3CDS	ENST00000400188	ENST00000396153		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-3CDS	ENST00000400188	ENST00000371778		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-intron	ENST00000400188	ENST00000545823		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-intron	ENST00000400188	ENST00000472808		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-3CDS	ENST00000545868	ENST00000396153		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-3CDS	ENST00000545868	ENST00000371778		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-intron	ENST00000545868	ENST00000545823		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-intron	ENST00000545868	ENST00000472808		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5UTR-3CDS	ENST00000557641	ENST00000396153		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5UTR-3CDS	ENST00000557641	ENST00000371778		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5UTR-intron	ENST00000557641	ENST00000545823		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
5UTR-intron	ENST00000557641	ENST00000472808		ChiTaRS3.1			DA493815	GABRB3	chr15	27017548	-	FAF1	chr1	51323670	-
intron-3CDS	ENST00000341074	ENST00000262139		ChiTaRS3.1			AW796682	SERPINB4	chr18	61310700	-	WIPI1	chr17	66426208	-
intron-5UTR	ENST00000341074	ENST00000589459		ChiTaRS3.1			AW796682	SERPINB4	chr18	61310700	-	WIPI1	chr17	66426208	-
intron-5UTR	ENST00000341074	ENST00000546360		ChiTaRS3.1			AW796682	SERPINB4	chr18	61310700	-	WIPI1	chr17	66426208	-
intron-3CDS	ENST00000356424	ENST00000262139		ChiTaRS3.1			AW796682	SERPINB4	chr18	61310700	-	WIPI1	chr17	66426208	-
intron-5UTR	ENST00000356424	ENST00000589459		ChiTaRS3.1			AW796682	SERPINB4	chr18	61310700	-	WIPI1	chr17	66426208	-
intron-5UTR	ENST00000356424	ENST00000546360		ChiTaRS3.1			AW796682	SERPINB4	chr18	61310700	-	WIPI1	chr17	66426208	-
intron-3CDS	ENST00000530267	ENST00000378756		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000530267	ENST00000378755		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000530267	ENST00000536055		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000530535	ENST00000378756		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000530535	ENST00000378755		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000530535	ENST00000536055		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
Frame-shit	ENST00000529308	ENST00000378756		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
Frame-shit	ENST00000529308	ENST00000378755		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
Frame-shit	ENST00000529308	ENST00000536055		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000441408	ENST00000378756		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000441408	ENST00000378755		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000441408	ENST00000536055		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000526425	ENST00000378756		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000526425	ENST00000378755		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3CDS	ENST00000526425	ENST00000536055		ChiTaRS3.1			AK310572	USP35	chr11	77907301	+	ATAD3A	chr1	1452757	+
intron-3UTR	ENST00000344034	ENST00000525943		ChiTaRS3.1			AI954747	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3UTR	ENST00000344034	ENST00000263576		ChiTaRS3.1			AI954747	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3UTR	ENST00000350803	ENST00000525943		ChiTaRS3.1			AI954747	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3UTR	ENST00000350803	ENST00000263576		ChiTaRS3.1			AI954747	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-intron	ENST00000504830	ENST00000560302		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000504830	ENST00000394518		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000504830	ENST00000361243		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000504830	ENST00000560579		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000504830	ENST00000394510		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000352040	ENST00000560302		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000352040	ENST00000394518		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000352040	ENST00000361243		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000352040	ENST00000560579		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000352040	ENST00000394510		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000504582	ENST00000560302		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000504582	ENST00000394518		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000504582	ENST00000361243		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000504582	ENST00000560579		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000504582	ENST00000394510		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000515401	ENST00000560302		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000515401	ENST00000394518		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000515401	ENST00000361243		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-intron	ENST00000515401	ENST00000560579		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
intron-3UTR	ENST00000515401	ENST00000394510		ChiTaRS3.1			AI279570	ADAMTS12	chr5	33770766	-	AKAP13	chr15	86292358	-
5CDS-3UTR	ENST00000369091	ENST00000592984		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
5CDS-3UTR	ENST00000369091	ENST00000004982		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
5CDS-intron	ENST00000369091	ENST00000587965		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
5CDS-3UTR	ENST00000369096	ENST00000592984		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
5CDS-3UTR	ENST00000369096	ENST00000004982		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
5CDS-intron	ENST00000369096	ENST00000587965		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
intron-3UTR	ENST00000369089	ENST00000592984		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
intron-3UTR	ENST00000369089	ENST00000004982		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
intron-intron	ENST00000369089	ENST00000587965		ChiTaRS3.1			BM708366	PRDM1	chr6	106536277	+	HSPB6	chr19	36246118	-
intron-3CDS	ENST00000271915	ENST00000329399		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-5UTR	ENST00000271915	ENST00000477757		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-3CDS	ENST00000361147	ENST00000329399		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-5UTR	ENST00000361147	ENST00000477757		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-3CDS	ENST00000358505	ENST00000329399		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-5UTR	ENST00000358505	ENST00000477757		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-3CDS	ENST00000515643	ENST00000329399		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-5UTR	ENST00000515643	ENST00000477757		ChiTaRS3.1			CD386038	KCNN3	chr1	154837852	+	PDLIM1	chr10	97028599	-
intron-3UTR	ENST00000249750	ENST00000233813		ChiTaRS3.1			BM677567	ALDH1A2	chr15	58245813	+	IGFBP5	chr2	217541019	+
intron-3UTR	ENST00000347587	ENST00000233813		ChiTaRS3.1			BM677567	ALDH1A2	chr15	58245813	+	IGFBP5	chr2	217541019	+
intron-3UTR	ENST00000537372	ENST00000233813		ChiTaRS3.1			BM677567	ALDH1A2	chr15	58245813	+	IGFBP5	chr2	217541019	+
intron-3UTR	ENST00000558231	ENST00000233813		ChiTaRS3.1			BM677567	ALDH1A2	chr15	58245813	+	IGFBP5	chr2	217541019	+
intron-3UTR	ENST00000559517	ENST00000233813		ChiTaRS3.1			BM677567	ALDH1A2	chr15	58245813	+	IGFBP5	chr2	217541019	+
intron-3UTR	ENST00000559579	ENST00000233813		ChiTaRS3.1			BM677567	ALDH1A2	chr15	58245813	+	IGFBP5	chr2	217541019	+
intron-intron	ENST00000452313	ENST00000567020		ChiTaRS3.1			CA307227	NPIPB7	chr16	28548923	+	TBC1D24	chr16	2569772	-
intron-intron	ENST00000452313	ENST00000293970		ChiTaRS3.1			CA307227	NPIPB7	chr16	28548923	+	TBC1D24	chr16	2569772	-
intron-intron	ENST00000452313	ENST00000434757		ChiTaRS3.1			CA307227	NPIPB7	chr16	28548923	+	TBC1D24	chr16	2569772	-
5CDS-intron	ENST00000369817	ENST00000379068		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5CDS-intron	ENST00000369817	ENST00000379059		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5CDS-intron	ENST00000369817	ENST00000493342		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
intron-intron	ENST00000479366	ENST00000379068		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
intron-intron	ENST00000479366	ENST00000379059		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
intron-intron	ENST00000479366	ENST00000493342		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5CDS-intron	ENST00000424325	ENST00000379068		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5CDS-intron	ENST00000424325	ENST00000379059		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5CDS-intron	ENST00000424325	ENST00000493342		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5UTR-intron	ENST00000406022	ENST00000379068		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5UTR-intron	ENST00000406022	ENST00000379059		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
5UTR-intron	ENST00000406022	ENST00000493342		ChiTaRS3.1			DW421192	RPL10	chrX	153627842	+	POLA1	chrX	24806814	-
intron-5UTR	ENST00000340635	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000340635	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000340635	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000340635	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000340635	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000340635	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000360047	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000360047	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000360047	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000360047	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000360047	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000360047	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000507116	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000507116	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000507116	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000507116	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000507116	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000507116	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502484	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502484	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502484	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502484	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502484	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502484	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000546160	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000546160	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000546160	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000546160	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000546160	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000546160	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502575	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502575	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502575	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502575	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502575	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000502575	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000358923	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000358923	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000358923	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000358923	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000358923	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000358923	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503258	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503258	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503258	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503258	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503258	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503258	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000405755	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000405755	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000405755	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000405755	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000405755	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000405755	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000317118	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000317118	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000317118	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000317118	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000317118	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000317118	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503947	ENST00000366911		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503947	ENST00000320285		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503947	ENST00000457520		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503947	ENST00000366908		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503947	ENST00000366906		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000503947	ENST00000366905		ChiTaRS3.1			DA282561	PDE4D	chr5	59129537	-	AGPAT4	chr6	161695030	-
intron-5UTR	ENST00000560410	ENST00000519807		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000560410	ENST00000009589		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000560410	ENST00000524349		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-intron	ENST00000560410	ENST00000520490		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000560410	ENST00000520627		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000560410	ENST00000521262		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-intron	ENST00000560410	ENST00000523936		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000560410	ENST00000519606		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000560410	ENST00000518875		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000519807		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000009589		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000524349		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-intron	ENST00000216802	ENST00000520490		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000520627		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000521262		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-intron	ENST00000216802	ENST00000523936		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000519606		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000216802	ENST00000518875		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000519807		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000009589		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000524349		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-intron	ENST00000471700	ENST00000520490		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000520627		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000521262		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-intron	ENST00000471700	ENST00000523936		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000519606		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
intron-5UTR	ENST00000471700	ENST00000518875		ChiTaRS3.1			BF205135	PSME2	chr14	24615814	+	RPS20	chr8	56987051	-
5CDS-3UTR	ENST00000252699	ENST00000372853		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
5CDS-3UTR	ENST00000252699	ENST00000452446		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
5CDS-3UTR	ENST00000252699	ENST00000372850		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
5CDS-intron	ENST00000252699	ENST00000372847		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
5CDS-3UTR	ENST00000252699	ENST00000483206		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000424234	ENST00000372853		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000424234	ENST00000452446		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000424234	ENST00000372850		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-intron	ENST00000424234	ENST00000372847		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000424234	ENST00000483206		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000390009	ENST00000372853		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000390009	ENST00000452446		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000390009	ENST00000372850		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-intron	ENST00000390009	ENST00000372847		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000390009	ENST00000483206		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000497637	ENST00000372853		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000497637	ENST00000452446		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000497637	ENST00000372850		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-intron	ENST00000497637	ENST00000372847		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3UTR	ENST00000497637	ENST00000483206		ChiTaRS3.1			BQ894415	ACTN4	chr19	39191659	+	URM1	chr9	131152132	+
intron-3CDS	ENST00000534749	ENST00000379613		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000534749	ENST00000379604		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000534749	ENST00000319516		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000534749	ENST00000379608		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000534749	ENST00000482890		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-5UTR	ENST00000534749	ENST00000497266		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000436757	ENST00000379613		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000436757	ENST00000379604		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000436757	ENST00000319516		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000436757	ENST00000379608		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000436757	ENST00000482890		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-5UTR	ENST00000436757	ENST00000497266		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000356404	ENST00000379613		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000356404	ENST00000379604		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000356404	ENST00000319516		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000356404	ENST00000379608		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000356404	ENST00000482890		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-5UTR	ENST00000356404	ENST00000497266		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000526450	ENST00000379613		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000526450	ENST00000379604		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000526450	ENST00000319516		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000526450	ENST00000379608		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-3CDS	ENST00000526450	ENST00000482890		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-5UTR	ENST00000526450	ENST00000497266		ChiTaRS3.1			BM724362	PITPNM1	chr11	67271192	-	TFAP2A	chr6	10404960	-
intron-intron	ENST00000394609	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394609	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394609	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000394609	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000394609	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000394609	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394609	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000405240	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000405240	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000405240	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000405240	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000405240	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000405240	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000405240	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357376	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357376	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357376	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000357376	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000357376	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000357376	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357376	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000317610	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000317610	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000317610	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000317610	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000317610	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000317610	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000317610	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357732	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357732	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357732	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000357732	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000357732	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000357732	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000357732	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000337526	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000337526	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000337526	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000337526	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000337526	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000337526	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000337526	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394611	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394611	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394611	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000394611	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000394611	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000394611	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000394611	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000404909	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000404909	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000404909	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000404909	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000404909	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000404909	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000404909	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000486085	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000486085	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000486085	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000486085	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000486085	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000486085	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000486085	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000354474	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000354474	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000354474	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000354474	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000354474	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000354474	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000354474	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000402434	ENST00000453258		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000402434	ENST00000543964		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000402434	ENST00000371207		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000402434	ENST00000371203		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000402434	ENST00000539125		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-5UTR	ENST00000402434	ENST00000371205		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
intron-intron	ENST00000402434	ENST00000490659		ChiTaRS3.1			DA313964	RTN4	chr2	55199667	-	ENTPD1	chr10	97515920	+
3UTR-3CDS	ENST00000537875	ENST00000399598		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
3UTR-3UTR	ENST00000537875	ENST00000522978		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
In-frame	ENST00000309791	ENST00000399598		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
5CDS-3UTR	ENST00000309791	ENST00000522978		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
In-frame	ENST00000297848	ENST00000399598		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
5CDS-3UTR	ENST00000297848	ENST00000522978		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
In-frame	ENST00000247781	ENST00000399598		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
5CDS-3UTR	ENST00000247781	ENST00000522978		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
3UTR-3CDS	ENST00000432943	ENST00000399598		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
3UTR-3UTR	ENST00000432943	ENST00000522978		ChiTaRS3.1			M64109	COL14A1	chr8	121228731	+	UBXN2B	chr8	59346952	+
In-frame	ENST00000353139	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
In-frame	ENST00000360679	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
Frame-shit	ENST00000394406	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
Frame-shit	ENST00000335166	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
intron-3CDS	ENST00000416895	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
In-frame	ENST00000361253	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
intron-3CDS	ENST00000588142	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
intron-3CDS	ENST00000589665	ENST00000333461		ChiTaRS3.1			XX000005	ACACA	chr17	35479453	-	STAC2	chr17	37374428	-
In-frame	ENST00000415083	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000415083	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000415083	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542420	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542743	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000539849	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000269137	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000545952	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000336777		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000337502		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-5UTR	ENST00000585241	ENST00000476392		ChiTaRS3.1			X79200	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
3UTR-3CDS	ENST00000534336	ENST00000216281		ChiTaRS3.1			CB135099	MALAT1	chr11	65267380	+	HSP90AA1	chr14	102551727	-
3UTR-3CDS	ENST00000534336	ENST00000334701		ChiTaRS3.1			CB135099	MALAT1	chr11	65267380	+	HSP90AA1	chr14	102551727	-
3UTR-3CDS	ENST00000534336	ENST00000441629		ChiTaRS3.1			CB135099	MALAT1	chr11	65267380	+	HSP90AA1	chr14	102551727	-
3UTR-intron	ENST00000534336	ENST00000558600		ChiTaRS3.1			CB135099	MALAT1	chr11	65267380	+	HSP90AA1	chr14	102551727	-
intron-5UTR	ENST00000587309	ENST00000316448		ChiTaRS3.1			BU191818	KIF18B	chr17	43003791	-	CALR	chr19	13049435	+
intron-5UTR	ENST00000438933	ENST00000316448		ChiTaRS3.1			BU191818	KIF18B	chr17	43003791	-	CALR	chr19	13049435	+
intron-5UTR	ENST00000593135	ENST00000316448		ChiTaRS3.1			BU191818	KIF18B	chr17	43003791	-	CALR	chr19	13049435	+
intron-5UTR	ENST00000339151	ENST00000316448		ChiTaRS3.1			BU191818	KIF18B	chr17	43003791	-	CALR	chr19	13049435	+
intron-5UTR	ENST00000590129	ENST00000316448		ChiTaRS3.1			BU191818	KIF18B	chr17	43003791	-	CALR	chr19	13049435	+
intron-3CDS	ENST00000548898	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548898	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548898	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548898	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548898	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548898	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552067	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552067	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552067	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552067	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552067	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552067	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000420846	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000420846	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000420846	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000420846	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000420846	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000420846	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548160	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548160	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548160	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548160	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548160	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000548160	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000546939	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000546939	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000546939	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000546939	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000546939	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000546939	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552692	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552692	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552692	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552692	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552692	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552692	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000549117	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000549117	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000549117	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000549117	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000549117	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000549117	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000257857	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000257857	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000257857	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000257857	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000257857	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000257857	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552754	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552754	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552754	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552754	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552754	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000552754	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000550776	ENST00000248089		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000550776	ENST00000574151		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000550776	ENST00000396916		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000550776	ENST00000572355		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000550776	ENST00000574980		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-3CDS	ENST00000550776	ENST00000354679		ChiTaRS3.1			AA037214	CD63	chr12	56121034	-	HCFC1R1	chr16	3073357	-
intron-intron	ENST00000296444	ENST00000255175		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3UTR	ENST00000296444	ENST00000342374		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000296444	ENST00000541235		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000296444	ENST00000468234		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000444115	ENST00000255175		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3UTR	ENST00000444115	ENST00000342374		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000444115	ENST00000541235		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000444115	ENST00000468234		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000426002	ENST00000255175		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3UTR	ENST00000426002	ENST00000342374		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000426002	ENST00000541235		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000426002	ENST00000468234		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000465449	ENST00000255175		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3UTR	ENST00000465449	ENST00000342374		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000465449	ENST00000541235		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000465449	ENST00000468234		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000442747	ENST00000255175		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3UTR	ENST00000442747	ENST00000342374		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000442747	ENST00000541235		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000442747	ENST00000468234		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000443308	ENST00000255175		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3UTR	ENST00000443308	ENST00000342374		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000443308	ENST00000541235		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-intron	ENST00000443308	ENST00000468234		ChiTaRS3.1			BQ369260	SHISA5	chr3	48510808	-	SERINC3	chr20	43126406	-
intron-3CDS	ENST00000295902	ENST00000450454		ChiTaRS3.1			BG164187	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000295902	ENST00000374601		ChiTaRS3.1			BG164187	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000295902	ENST00000461794		ChiTaRS3.1			BG164187	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-3CDS	ENST00000564377	ENST00000450454		ChiTaRS3.1			BG164187	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000564377	ENST00000374601		ChiTaRS3.1			BG164187	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000564377	ENST00000461794		ChiTaRS3.1			BG164187	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-3UTR	ENST00000215882	ENST00000285667		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000215882	ENST00000544452		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000215882	ENST00000478035		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-3UTR	ENST00000451283	ENST00000285667		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000451283	ENST00000544452		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000451283	ENST00000478035		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-3UTR	ENST00000461267	ENST00000285667		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000461267	ENST00000544452		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000461267	ENST00000478035		ChiTaRS3.1			D16945	SLC25A1	chr22	19164171	-	HSPA13	chr21	15743768	-
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ207767	ETV6	chr12	12031402	+	RUNX1	chr21	36276309	-
intron-intron	ENST00000390548	ENST00000282050		ChiTaRS3.1			DB201567	IGHG1	chr22	22764401	+	ATP5A1	chr18	43678262	-
intron-intron	ENST00000390548	ENST00000593152		ChiTaRS3.1			DB201567	IGHG1	chr22	22764401	+	ATP5A1	chr18	43678262	-
intron-intron	ENST00000390548	ENST00000590665		ChiTaRS3.1			DB201567	IGHG1	chr22	22764401	+	ATP5A1	chr18	43678262	-
intron-5UTR	ENST00000390548	ENST00000398752		ChiTaRS3.1			DB201567	IGHG1	chr22	22764401	+	ATP5A1	chr18	43678262	-
intron-5UTR	ENST00000390548	ENST00000591267		ChiTaRS3.1			DB201567	IGHG1	chr22	22764401	+	ATP5A1	chr18	43678262	-
intron-3CDS	ENST00000337907	ENST00000237014		ChiTaRS3.1			CD102904	RERE	chr1	8563775	-	TTR	chr18	29172939	+
intron-3CDS	ENST00000377464	ENST00000237014		ChiTaRS3.1			CD102904	RERE	chr1	8563775	-	TTR	chr18	29172939	+
intron-3CDS	ENST00000400907	ENST00000237014		ChiTaRS3.1			CD102904	RERE	chr1	8563775	-	TTR	chr18	29172939	+
intron-3CDS	ENST00000400908	ENST00000237014		ChiTaRS3.1			CD102904	RERE	chr1	8563775	-	TTR	chr18	29172939	+
intron-3CDS	ENST00000476556	ENST00000237014		ChiTaRS3.1			CD102904	RERE	chr1	8563775	-	TTR	chr18	29172939	+
intron-3CDS	ENST00000460659	ENST00000237014		ChiTaRS3.1			CD102904	RERE	chr1	8563775	-	TTR	chr18	29172939	+
3UTR-3UTR	ENST00000295491	ENST00000441969		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000295491	ENST00000353836		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000295491	ENST00000442846		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000356298		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000295491	ENST00000432469		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000525998		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000436984		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000439889		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000295491	ENST00000339313		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000441969		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000353836		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000442846		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000356298		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000507019	ENST00000432469		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000525998		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000436984		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000439889		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000507019	ENST00000339313		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000441969		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000353836		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000442846		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000356298		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-3UTR	ENST00000507349	ENST00000432469		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000525998		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000436984		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000439889		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000507349	ENST00000339313		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000441969		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000353836		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000442846		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000356298		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-3UTR	ENST00000509571	ENST00000432469		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000525998		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000436984		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000439889		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
3UTR-intron	ENST00000509571	ENST00000339313		ChiTaRS3.1			BX328907	MRPS18C	chr4	84382386	+	SIGLEC10	chr19	51913817	-
5CDS-intron	ENST00000542455	ENST00000443756		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000542455	ENST00000545132		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000542455	ENST00000294353		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000587143	ENST00000443756		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000587143	ENST00000545132		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000587143	ENST00000294353		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
3UTR-intron	ENST00000588578	ENST00000443756		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
3UTR-intron	ENST00000588578	ENST00000545132		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
3UTR-intron	ENST00000588578	ENST00000294353		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
intron-intron	ENST00000587986	ENST00000443756		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
intron-intron	ENST00000587986	ENST00000545132		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
intron-intron	ENST00000587986	ENST00000294353		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
intron-intron	ENST00000589319	ENST00000443756		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
intron-intron	ENST00000589319	ENST00000545132		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
intron-intron	ENST00000589319	ENST00000294353		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000445217	ENST00000443756		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000445217	ENST00000545132		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000445217	ENST00000294353		ChiTaRS3.1			AL518023	ZNF793	chr19	38027982	+	ZYG11B	chr1	53211430	-
5CDS-intron	ENST00000394997	ENST00000548898		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000552067		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000394997	ENST00000420846		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000548160		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000546939		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000552692		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000549117		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000394997	ENST00000257857		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000552754		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000394997	ENST00000550776		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000548898		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000552067		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000337138	ENST00000420846		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000548160		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000546939		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000552692		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000549117		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000337138	ENST00000257857		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000552754		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000337138	ENST00000550776		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000548898		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000552067		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000323441	ENST00000420846		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000548160		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000546939		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000552692		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000549117		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000323441	ENST00000257857		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000552754		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000323441	ENST00000550776		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000548898		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000552067		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-5UTR	ENST00000557538	ENST00000420846		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000548160		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000546939		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000552692		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000549117		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-5UTR	ENST00000557538	ENST00000257857		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000552754		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5UTR-intron	ENST00000557538	ENST00000550776		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000548898		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000552067		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000539097	ENST00000420846		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000548160		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000546939		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000552692		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000549117		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-5UTR	ENST00000539097	ENST00000257857		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000552754		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
5CDS-intron	ENST00000539097	ENST00000550776		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000548898		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000552067		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-5UTR	ENST00000557206	ENST00000420846		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000548160		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000546939		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000552692		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000549117		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-5UTR	ENST00000557206	ENST00000257857		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000552754		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-intron	ENST00000557206	ENST00000550776		ChiTaRS3.1			BP330336	HIF1A	chr14	62187177	+	CD63	chr12	56122794	-
3UTR-3UTR	ENST00000534336	ENST00000368811		ChiTaRS3.1			C00609	MALAT1	chr11	65267975	+	S100A10	chr1	151955490	-
3UTR-3UTR	ENST00000534336	ENST00000368809		ChiTaRS3.1			C00609	MALAT1	chr11	65267975	+	S100A10	chr1	151955490	-
3UTR-intron	ENST00000534336	ENST00000478574		ChiTaRS3.1			C00609	MALAT1	chr11	65267975	+	S100A10	chr1	151955490	-
intron-3UTR	ENST00000275605	ENST00000374864		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000275605	ENST00000535650		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000275605	ENST00000262650		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000275605	ENST00000483727		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-3UTR	ENST00000395471	ENST00000374864		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000395471	ENST00000535650		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000395471	ENST00000262650		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000395471	ENST00000483727		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-3UTR	ENST00000459834	ENST00000374864		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000459834	ENST00000535650		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000459834	ENST00000262650		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-intron	ENST00000459834	ENST00000483727		ChiTaRS3.1			BX101324	PSPH	chr7	56131020	-	ITCH	chr20	33097207	-
intron-3CDS	ENST00000348405	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000348405	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000348405	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000348405	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000513858	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000513858	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000513858	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000513858	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000395310	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000395310	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000395310	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000395310	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000443462	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000443462	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000443462	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000443462	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000509142	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000509142	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000509142	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000509142	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000326950	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000326950	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000326950	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000326950	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000432794	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000432794	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000432794	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000432794	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000311785	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000311785	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000311785	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000311785	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000448323	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000448323	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000448323	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000448323	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000505472	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000505472	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000505472	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000505472	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000500777	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000500777	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000500777	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000500777	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000508502	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000508502	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000508502	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000508502	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000355196	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000355196	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000355196	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000355196	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000264405	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000264405	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000264405	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000264405	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000505984	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000505984	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000505984	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000505984	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000508479	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000508479	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000508479	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000508479	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-3CDS	ENST00000436790	ENST00000367534		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000436790	ENST00000462965		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000436790	ENST00000359856		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-5UTR	ENST00000436790	ENST00000294742		ChiTaRS3.1			BM992139	SEC31A	chr4	83745811	+	ARPC5	chr1	183602237	+
intron-intron	ENST00000338316	ENST00000326639		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000264584		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000441387		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000354456		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000506199		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000512292		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000338316	ENST00000394288		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000338316	ENST00000432347		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000338316	ENST00000427266		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000326639		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000264584		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000441387		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000354456		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000506199		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000512292		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000537121	ENST00000394288		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000537121	ENST00000432347		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000537121	ENST00000427266		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000326639		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000264584		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000441387		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000354456		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000506199		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000512292		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000513693	ENST00000394288		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-3UTR	ENST00000513693	ENST00000432347		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
intron-intron	ENST00000513693	ENST00000427266		ChiTaRS3.1			AW962618	ADCY2	chr1	152005172	+	LARP1B	chr4	129029795	-
In-frame	ENST00000374736	ENST00000404771		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000372440		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000372443		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000286628		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000286627		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000354353		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000404857		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000374736	ENST00000406533		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
5CDS-intron	ENST00000374736	ENST00000484507		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
5CDS-intron	ENST00000374736	ENST00000481070		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
5CDS-intron	ENST00000374736	ENST00000480683		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000404771		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000372440		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000372443		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000286628		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000286627		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000354353		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000404857		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000494467	ENST00000406533		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000494467	ENST00000484507		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000494467	ENST00000481070		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000494467	ENST00000480683		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000404771		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000372440		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000372443		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000286628		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000286627		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000354353		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000404857		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
In-frame	ENST00000423487	ENST00000406533		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
5CDS-intron	ENST00000423487	ENST00000484507		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
5CDS-intron	ENST00000423487	ENST00000481070		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
5CDS-intron	ENST00000423487	ENST00000480683		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000404771		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000372440		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000372443		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000286628		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000286627		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000354353		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000404857		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-3CDS	ENST00000374733	ENST00000406533		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000374733	ENST00000484507		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000374733	ENST00000481070		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000374733	ENST00000480683		ChiTaRS3.1			DB286350	ABCA1	chr9	107665894	-	KCNMA1	chr10	78850268	-
intron-intron	ENST00000382582	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000377715		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000409009		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000264448		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000464408		ChiTaRS3.1			AV724910	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
3UTR-3CDS	ENST00000256951	ENST00000317089		ChiTaRS3.1			BM785881	EMP1	chr12	13369379	+	DNAJA2	chr16	47002066	-
intron-3CDS	ENST00000537612	ENST00000317089		ChiTaRS3.1			BM785881	EMP1	chr12	13369379	+	DNAJA2	chr16	47002066	-
intron-3CDS	ENST00000431267	ENST00000317089		ChiTaRS3.1			BM785881	EMP1	chr12	13369379	+	DNAJA2	chr16	47002066	-
intron-3CDS	ENST00000544053	ENST00000317089		ChiTaRS3.1			BM785881	EMP1	chr12	13369379	+	DNAJA2	chr16	47002066	-
intron-3CDS	ENST00000542289	ENST00000317089		ChiTaRS3.1			BM785881	EMP1	chr12	13369379	+	DNAJA2	chr16	47002066	-
intron-3CDS	ENST00000396301	ENST00000317089		ChiTaRS3.1			BM785881	EMP1	chr12	13369379	+	DNAJA2	chr16	47002066	-
intron-3CDS	ENST00000316084	ENST00000599117		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000316084	ENST00000432763		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000316084	ENST00000402194		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000316084	ENST00000359191		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000316084	ENST00000598725		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000486733	ENST00000599117		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000486733	ENST00000432763		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000486733	ENST00000402194		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000486733	ENST00000359191		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000486733	ENST00000598725		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000373626	ENST00000599117		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000373626	ENST00000432763		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000373626	ENST00000402194		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000373626	ENST00000359191		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
intron-3CDS	ENST00000373626	ENST00000598725		ChiTaRS3.1			AW015878	RPS4X	chrX	71492541	+	SUPT5H	chr19	39963718	-
5UTR-intron	ENST00000549405	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
5UTR-intron	ENST00000549405	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000393205	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000393205	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000332156	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000332156	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000604798	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000604798	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000552808	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000552808	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000548651	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000548651	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000552435	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000552435	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000602941	ENST00000500779		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-intron	ENST00000602941	ENST00000513221		ChiTaRS3.1			DA789297	MGAT4C	chr12	87232441	-	STARD4-AS1	chr5	111092878	-
intron-5UTR	ENST00000339600	ENST00000341307		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000339600	ENST00000356000		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-3UTR	ENST00000339600	ENST00000538995		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000339600	ENST00000377819		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000339600	ENST00000339997		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000339600	ENST00000540798		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000339600	ENST00000537981		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-intron	ENST00000339600	ENST00000354497		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000492822	ENST00000341307		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000492822	ENST00000356000		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-3UTR	ENST00000492822	ENST00000538995		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000492822	ENST00000377819		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000492822	ENST00000339997		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000492822	ENST00000540798		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-5UTR	ENST00000492822	ENST00000537981		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
intron-intron	ENST00000492822	ENST00000354497		ChiTaRS3.1			DA146680	NDUFA4	chr7	10973200	-	RTN3	chr11	63448972	+
Frame-shit	ENST00000383737	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000383737	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-intron	ENST00000383737	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-5UTR	ENST00000383737	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000395734	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000395734	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-intron	ENST00000395734	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-5UTR	ENST00000395734	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000426837	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000426837	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-intron	ENST00000426837	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-5UTR	ENST00000426837	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000360240	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000360240	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-intron	ENST00000360240	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-5UTR	ENST00000360240	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000439356	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000439356	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-intron	ENST00000439356	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-5UTR	ENST00000439356	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000264724	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000264724	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-intron	ENST00000264724	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-5UTR	ENST00000264724	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000420772	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000420772	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-intron	ENST00000420772	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-5UTR	ENST00000420772	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000441748	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000441748	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-intron	ENST00000441748	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-5UTR	ENST00000441748	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000462206	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-3CDS	ENST00000462206	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-intron	ENST00000462206	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
intron-5UTR	ENST00000462206	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
In-frame	ENST00000434267	ENST00000371153		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
In-frame	ENST00000434267	ENST00000354381		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-intron	ENST00000434267	ENST00000317477		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
5CDS-5UTR	ENST00000434267	ENST00000371150		ChiTaRS3.1			CN395192	MAP4	chr3	48019355	-	KANK4	chr1	62737263	-
Frame-shit	ENST00000442011	ENST00000216181		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
5CDS-intron	ENST00000442011	ENST00000475726		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
5CDS-intron	ENST00000442011	ENST00000401701		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
Frame-shit	ENST00000305126	ENST00000216181		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
5CDS-intron	ENST00000305126	ENST00000475726		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
5CDS-intron	ENST00000305126	ENST00000401701		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-3CDS	ENST00000508076	ENST00000216181		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-intron	ENST00000508076	ENST00000475726		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-intron	ENST00000508076	ENST00000401701		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-3CDS	ENST00000504185	ENST00000216181		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-intron	ENST00000504185	ENST00000475726		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-intron	ENST00000504185	ENST00000401701		ChiTaRS3.1			BI058885	TGFBI	chr5	135385193	+	MYH9	chr22	36691071	-
intron-3CDS	ENST00000372684	ENST00000540468		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000539919		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000258091		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000398422		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000537131		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000538797		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3UTR	ENST00000372684	ENST00000473786		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000540468		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000539919		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000258091		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000398422		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000537131		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000538797		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3UTR	ENST00000372683	ENST00000473786		ChiTaRS3.1			AW410065	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000425967	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000425967	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000425967	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000425967	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000425967	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000425967	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000425967	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000425967	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397091	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397091	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397091	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397091	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397091	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397091	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397091	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397091	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000447712	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000447712	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000447712	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000447712	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000447712	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000447712	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000447712	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000447712	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000341462	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000341462	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000341462	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000341462	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000341462	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000341462	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000341462	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000341462	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000532791	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000532791	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000532791	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000532791	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000532791	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000532791	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000532791	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000532791	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397113	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397113	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397113	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397113	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397113	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397113	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397113	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397113	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000356207	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000356207	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000356207	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000356207	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000356207	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000356207	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000356207	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000356207	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000335922	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000335922	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000335922	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000335922	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000335922	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000335922	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000335922	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000335922	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000326324	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000326324	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000326324	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000326324	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000326324	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000326324	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000326324	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000326324	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397103	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397103	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397103	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397103	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397103	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397103	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397103	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397103	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397108	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397108	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000397108	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397108	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397108	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397108	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000397108	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000397108	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000496629	ENST00000535572		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000496629	ENST00000537687		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3CDS	ENST00000496629	ENST00000315939		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000496629	ENST00000447667		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000496629	ENST00000530271		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000496629	ENST00000540360		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-3UTR	ENST00000496629	ENST00000340908		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
intron-intron	ENST00000496629	ENST00000574564		ChiTaRS3.1			BQ375865	FGFR1	chr8	38274890	-	WNK1	chr12	970178	+
3UTR-3CDS	ENST00000534336	ENST00000369927		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
3UTR-3CDS	ENST00000534336	ENST00000346249		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
3UTR-3CDS	ENST00000534336	ENST00000348257		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
3UTR-3CDS	ENST00000534336	ENST00000352482		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
3UTR-3CDS	ENST00000534336	ENST00000358548		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
3UTR-3CDS	ENST00000534336	ENST00000351424		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
3UTR-3CDS	ENST00000534336	ENST00000217121		ChiTaRS3.1			DA280558	MALAT1	chr11	65266567	+	TPD52L2	chr20	62505116	+
5CDS-intron	ENST00000544564	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000359263		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000358334		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371501		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371502		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371489		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000485212		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371488		ChiTaRS3.1			AW366614	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-3CDS	ENST00000536708	ENST00000541110		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000536708	ENST00000372917		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000536708	ENST00000372922		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000536708	ENST00000340840		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000536708	ENST00000354325		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000338399	ENST00000541110		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000338399	ENST00000372917		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000338399	ENST00000372922		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000338399	ENST00000340840		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000338399	ENST00000354325		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000578663	ENST00000541110		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000578663	ENST00000372917		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000578663	ENST00000372922		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000578663	ENST00000340840		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
3UTR-3CDS	ENST00000578663	ENST00000354325		ChiTaRS3.1			AI392977	CDK5RAP3	chr17	46058947	-	TRERF1	chr6	42236368	+
5UTR-5UTR	ENST00000272542	ENST00000366607		ChiTaRS3.1			BI561585	SLC20A1	chr2	113403668	+	TOMM20	chr1	235292066	-
5UTR-intron	ENST00000272542	ENST00000467767		ChiTaRS3.1			BI561585	SLC20A1	chr2	113403668	+	TOMM20	chr1	235292066	-
intron-5UTR	ENST00000480984	ENST00000366607		ChiTaRS3.1			BI561585	SLC20A1	chr2	113403668	+	TOMM20	chr1	235292066	-
intron-intron	ENST00000480984	ENST00000467767		ChiTaRS3.1			BI561585	SLC20A1	chr2	113403668	+	TOMM20	chr1	235292066	-
intron-3CDS	ENST00000508628	ENST00000394936		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000508628	ENST00000394934		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000456466	ENST00000394936		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000456466	ENST00000394934		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000582970	ENST00000394936		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000582970	ENST00000394934		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000319921	ENST00000394936		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000319921	ENST00000394934		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000336301	ENST00000394936		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000336301	ENST00000394934		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000427003	ENST00000394936		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3CDS	ENST00000427003	ENST00000394934		ChiTaRS3.1			BF853810	RNF213	chr17	78355957	+	PSAP	chr10	73580021	-
intron-3UTR	ENST00000344887	ENST00000343550		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000344887	ENST00000222305		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000344887	ENST00000595068		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000344887	ENST00000379134		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000344887	ENST00000594064		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000344887	ENST00000600341		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000343550		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000222305		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000595068		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000588882	ENST00000379134		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000588882	ENST00000594064		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000600341		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000343550		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000222305		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000595068		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000590463	ENST00000379134		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000590463	ENST00000594064		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000600341		ChiTaRS3.1			AJ710545	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000456329	ENST00000299576		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000309377		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000309357		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000529876		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000525005		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000534506		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000396648		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000534147		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000299576		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000309377		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000309357		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000529876		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000525005		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000534506		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000396648		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000534147		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000299576		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000309377		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000309357		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000529876		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000525005		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000534506		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000396648		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000534147		ChiTaRS3.1			AK074455	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-3CDS	ENST00000228825	ENST00000228825		ChiTaRS3.1			AI433581	ARPC3	chr12	110873961	+	ARPC3	chr12	110874432	-
intron-intron	ENST00000228825	ENST00000471641		ChiTaRS3.1			AI433581	ARPC3	chr12	110873961	+	ARPC3	chr12	110874432	-
intron-3CDS	ENST00000471641	ENST00000228825		ChiTaRS3.1			AI433581	ARPC3	chr12	110873961	+	ARPC3	chr12	110874432	-
intron-intron	ENST00000471641	ENST00000471641		ChiTaRS3.1			AI433581	ARPC3	chr12	110873961	+	ARPC3	chr12	110874432	-
Frame-shit	ENST00000404234	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000404234	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000529632	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000529632	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000360929	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000360929	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000248933	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000248933	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000343706	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000343706	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000402979	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000402979	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000403121	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
Frame-shit	ENST00000403121	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
intron-3CDS	ENST00000411842	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
intron-3CDS	ENST00000411842	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
intron-3CDS	ENST00000494013	ENST00000305124		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
intron-3CDS	ENST00000494013	ENST00000393780		ChiTaRS3.1			T07418	SEZ6L	chr22	26702013	+	GAP43	chr3	115395138	+
intron-3UTR	ENST00000549920	ENST00000555699		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549920	ENST00000334869		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549920	ENST00000557434		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549920	ENST00000393218		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-intron	ENST00000549920	ENST00000557034		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000550645	ENST00000555699		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000550645	ENST00000334869		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000550645	ENST00000557434		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000550645	ENST00000393218		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-intron	ENST00000550645	ENST00000557034		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000552588	ENST00000555699		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000552588	ENST00000334869		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000552588	ENST00000557434		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000552588	ENST00000393218		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-intron	ENST00000552588	ENST00000557034		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549273	ENST00000555699		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549273	ENST00000334869		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549273	ENST00000557434		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-3UTR	ENST00000549273	ENST00000393218		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-intron	ENST00000549273	ENST00000557034		ChiTaRS3.1			CN269392	RPL18	chr19	49119141	-	LGMN	chr14	93170270	-
intron-intron	ENST00000418917	ENST00000389048		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000418917	ENST00000431873		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000418917	ENST00000498037		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000490574	ENST00000389048		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000490574	ENST00000431873		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000490574	ENST00000498037		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000240851	ENST00000389048		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000240851	ENST00000431873		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000240851	ENST00000498037		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000476228	ENST00000389048		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000476228	ENST00000431873		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000476228	ENST00000498037		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000481203	ENST00000389048		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000481203	ENST00000431873		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
intron-intron	ENST00000481203	ENST00000498037		ChiTaRS3.1			AF390891	TFG	chr3	100448131	+	ALK	chr2	29448078	-
3UTR-5UTR	ENST00000309328	ENST00000316963		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000309328	ENST00000343231		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000309328	ENST00000522007		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000309328	ENST00000519926		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-5UTR	ENST00000531405	ENST00000316963		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000531405	ENST00000343231		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000531405	ENST00000522007		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000531405	ENST00000519926		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
intron-5UTR	ENST00000527920	ENST00000316963		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
intron-intron	ENST00000527920	ENST00000343231		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
intron-intron	ENST00000527920	ENST00000522007		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
intron-intron	ENST00000527920	ENST00000519926		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-5UTR	ENST00000526877	ENST00000316963		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000526877	ENST00000343231		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000526877	ENST00000522007		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
3UTR-intron	ENST00000526877	ENST00000519926		ChiTaRS3.1			AK296257	SSSCA1	chr11	65339230	+	LYPLA1	chr8	55014414	-
intron-3CDS	ENST00000261867	ENST00000430479		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000399357		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000420159		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000343495		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000242066		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000405192		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000405358		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000403527		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000405218		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000261867	ENST00000403685		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-5UTR	ENST00000261867	ENST00000476720		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-3CDS	ENST00000559667	ENST00000430479		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000399357		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000420159		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000343495		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000242066		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000405192		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000405358		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000403527		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000405218		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-intron	ENST00000559667	ENST00000403685		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-5UTR	ENST00000559667	ENST00000476720		ChiTaRS3.1			EF632112	SLC30A4	chr15	45806161	+	ETV1	chr7	13975523	-
intron-5UTR	ENST00000358296	ENST00000401558		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000358296	ENST00000404992		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000358296	ENST00000406957		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000358296	ENST00000481214		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-5UTR	ENST00000305570	ENST00000401558		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000305570	ENST00000404992		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000305570	ENST00000406957		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000305570	ENST00000481214		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-5UTR	ENST00000596452	ENST00000401558		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000596452	ENST00000404992		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000596452	ENST00000406957		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
intron-intron	ENST00000596452	ENST00000481214		ChiTaRS3.1			DB158037	ZNF100	chr19	21913286	-	XPO1	chr2	61764896	-
5UTR-3UTR	ENST00000397195	ENST00000508821		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
5UTR-3UTR	ENST00000397195	ENST00000425382		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
5UTR-3UTR	ENST00000397195	ENST00000438340		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
5UTR-3UTR	ENST00000397195	ENST00000505959		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000572915	ENST00000508821		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000572915	ENST00000425382		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000572915	ENST00000438340		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000572915	ENST00000505959		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000451360	ENST00000508821		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000451360	ENST00000425382		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000451360	ENST00000438340		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3UTR	ENST00000451360	ENST00000505959		ChiTaRS3.1			AI934581	PAFAH1B1	chr17	2497210	-	ELOVL7	chr5	60047749	+
intron-3CDS	ENST00000483612	ENST00000298892		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000483612	ENST00000395805		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000483612	ENST00000251071		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000483612	ENST00000308433		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000483612	ENST00000417045		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-intron	ENST00000483612	ENST00000538387		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3CDS	ENST00000292401	ENST00000298892		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000292401	ENST00000395805		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000292401	ENST00000251071		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000292401	ENST00000308433		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000292401	ENST00000417045		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-intron	ENST00000292401	ENST00000538387		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3CDS	ENST00000411734	ENST00000298892		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000411734	ENST00000395805		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000411734	ENST00000251071		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000411734	ENST00000308433		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-3UTR	ENST00000411734	ENST00000417045		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-intron	ENST00000411734	ENST00000538387		ChiTaRS3.1			AX795402	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863313	-
intron-5UTR	ENST00000464527	ENST00000310473		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-intron	ENST00000464527	ENST00000536983		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-intron	ENST00000464527	ENST00000542615		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-5UTR	ENST00000445927	ENST00000310473		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-intron	ENST00000445927	ENST00000536983		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-intron	ENST00000445927	ENST00000542615		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-5UTR	ENST00000294947	ENST00000310473		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-intron	ENST00000294947	ENST00000536983		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-intron	ENST00000294947	ENST00000542615		ChiTaRS3.1			BM827779	C2orf61	chr2	47388862	-	UCP2	chr11	73693888	-
intron-5UTR	ENST00000382582	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000382582	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000382582	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000382582	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000355994	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000355994	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000355994	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000355994	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397875	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397875	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397875	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397875	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397866	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397866	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397866	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397866	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397865	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397865	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397865	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397865	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000527041	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000527041	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000527041	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000527041	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000359645	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000359645	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000359645	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000359645	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000528160	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000528160	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000528160	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000528160	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397869	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397869	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397869	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397869	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000354542	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000354542	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000354542	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000354542	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000526111	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000526111	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000526111	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000526111	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000580402	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000580402	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000580402	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000580402	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000579129	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000579129	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000579129	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000579129	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000578193	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000578193	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000578193	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000578193	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397863	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397863	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397863	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397863	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397860	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000397860	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397860	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000397860	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000487778	ENST00000527350		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-5UTR	ENST00000487778	ENST00000278919		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000487778	ENST00000366139		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
intron-intron	ENST00000487778	ENST00000524435		ChiTaRS3.1			AV727992	MBP	chr18	74691842	-	FEZ1	chr11	125351471	-
In-frame	ENST00000360265	ENST00000355710		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000360265	ENST00000340058		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000358461	ENST00000355710		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000358461	ENST00000340058		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000420658	ENST00000355710		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000420658	ENST00000340058		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000382543	ENST00000355710		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
In-frame	ENST00000382543	ENST00000340058		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
intron-3CDS	ENST00000513842	ENST00000355710		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
intron-3CDS	ENST00000513842	ENST00000340058		ChiTaRS3.1			X56348	AFAP1	chr4	7870348	-	RET	chr10	43612031	+
3UTR-5UTR	ENST00000374012	ENST00000418088		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-5UTR	ENST00000374012	ENST00000452079		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000374012	ENST00000419973		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-5UTR	ENST00000374012	ENST00000423764		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000374012	ENST00000587071		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000374012	ENST00000608600		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000374012	ENST00000544565		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-5UTR	ENST00000439301	ENST00000418088		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-5UTR	ENST00000439301	ENST00000452079		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000439301	ENST00000419973		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-5UTR	ENST00000439301	ENST00000423764		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000439301	ENST00000587071		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000439301	ENST00000608600		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
3UTR-intron	ENST00000439301	ENST00000544565		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-5UTR	ENST00000481202	ENST00000418088		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-5UTR	ENST00000481202	ENST00000452079		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-intron	ENST00000481202	ENST00000419973		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-5UTR	ENST00000481202	ENST00000423764		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-intron	ENST00000481202	ENST00000587071		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-intron	ENST00000481202	ENST00000608600		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-intron	ENST00000481202	ENST00000544565		ChiTaRS3.1			BF977691	PHF20	chr20	34537699	+	TP73-AS1	chr1	3654176	-
intron-3UTR	ENST00000416600	ENST00000366812		ChiTaRS3.1			BE869711	MAVS	chr20	3856132	+	ACBD3	chr1	226332879	-
intron-intron	ENST00000416600	ENST00000464927		ChiTaRS3.1			BE869711	MAVS	chr20	3856132	+	ACBD3	chr1	226332879	-
intron-3UTR	ENST00000428216	ENST00000366812		ChiTaRS3.1			BE869711	MAVS	chr20	3856132	+	ACBD3	chr1	226332879	-
intron-intron	ENST00000428216	ENST00000464927		ChiTaRS3.1			BE869711	MAVS	chr20	3856132	+	ACBD3	chr1	226332879	-
intron-3UTR	ENST00000358134	ENST00000366812		ChiTaRS3.1			BE869711	MAVS	chr20	3856132	+	ACBD3	chr1	226332879	-
intron-intron	ENST00000358134	ENST00000464927		ChiTaRS3.1			BE869711	MAVS	chr20	3856132	+	ACBD3	chr1	226332879	-
intron-3UTR	ENST00000311106	ENST00000301964		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000311106	ENST00000440161		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000311106	ENST00000343450		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000311106	ENST00000492635		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-3UTR	ENST00000513085	ENST00000301964		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000513085	ENST00000440161		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000513085	ENST00000343450		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000513085	ENST00000492635		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-3UTR	ENST00000508626	ENST00000301964		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000508626	ENST00000440161		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000508626	ENST00000343450		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000508626	ENST00000492635		ChiTaRS3.1			BU948504	PCSK1	chr5	95748031	-	TADA3	chr3	9821734	-
intron-intron	ENST00000508305	ENST00000455895		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000413080		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000341071		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000526031		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000419121		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000446293		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000463967		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000508305	ENST00000449308		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000455895		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000413080		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000341071		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000526031		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000419121		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000446293		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000463967		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000239440	ENST00000449308		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000455895		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000413080		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000341071		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000526031		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000419121		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000446293		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000463967		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000512390	ENST00000449308		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000455895		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000413080		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000341071		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000526031		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000419121		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000446293		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000463967		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-intron	ENST00000513878	ENST00000449308		ChiTaRS3.1			BQ335833	ARAP3	chr5	141035786	-	BSDC1	chr1	32834996	-
intron-3UTR	ENST00000368802	ENST00000533507		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368802	ENST00000263774		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000368802	ENST00000529276		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000368802	ENST00000528192		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368802	ENST00000534208		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368802	ENST00000534716		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368805	ENST00000533507		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368805	ENST00000263774		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000368805	ENST00000529276		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000368805	ENST00000528192		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368805	ENST00000534208		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000368805	ENST00000534716		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000435970	ENST00000533507		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000435970	ENST00000263774		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000435970	ENST00000529276		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000435970	ENST00000528192		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000435970	ENST00000534208		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000435970	ENST00000534716		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000358835	ENST00000533507		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000358835	ENST00000263774		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000358835	ENST00000529276		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000358835	ENST00000528192		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000358835	ENST00000534208		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000358835	ENST00000534716		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000462119	ENST00000533507		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000462119	ENST00000263774		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000462119	ENST00000529276		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-intron	ENST00000462119	ENST00000528192		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000462119	ENST00000534208		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
intron-3UTR	ENST00000462119	ENST00000534716		ChiTaRS3.1			BG254036	REV3L	chr6	111620910	-	NDUFS3	chr11	47602436	+
In-frame	ENST00000422447	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000288828		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000401525		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000404704		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000485854		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000382384		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000484262		ChiTaRS3.1			BQ928549	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000413834	ENST00000378165		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-3CDS	ENST00000413834	ENST00000378150		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-3CDS	ENST00000413834	ENST00000535341		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-intron	ENST00000413834	ENST00000466201		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-intron	ENST00000413834	ENST00000540259		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-3CDS	ENST00000437572	ENST00000378165		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-3CDS	ENST00000437572	ENST00000378150		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-3CDS	ENST00000437572	ENST00000535341		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-intron	ENST00000437572	ENST00000466201		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-intron	ENST00000437572	ENST00000540259		ChiTaRS3.1			AA085790	ATP5J2-PTCD1	chr7	99057774	+	NMT2	chr10	15154874	+
intron-3UTR	ENST00000479481	ENST00000356495		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
intron-intron	ENST00000479481	ENST00000487208		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-3UTR	ENST00000370992	ENST00000356495		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-intron	ENST00000370992	ENST00000487208		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-3UTR	ENST00000536831	ENST00000356495		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-intron	ENST00000536831	ENST00000487208		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-3UTR	ENST00000315563	ENST00000356495		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-intron	ENST00000315563	ENST00000487208		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-3UTR	ENST00000414986	ENST00000356495		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
5CDS-intron	ENST00000414986	ENST00000487208		ChiTaRS3.1			AK000238	RRP12	chr10	99131831	-	PIGR	chr1	207101922	-
intron-3CDS	ENST00000429829	ENST00000333188		ChiTaRS3.1			DA812494	XIST	chrX	73065345	-	COPB2	chr3	139092130	-
intron-3CDS	ENST00000429829	ENST00000507777		ChiTaRS3.1			DA812494	XIST	chrX	73065345	-	COPB2	chr3	139092130	-
intron-intron	ENST00000429829	ENST00000510491		ChiTaRS3.1			DA812494	XIST	chrX	73065345	-	COPB2	chr3	139092130	-
3UTR-3CDS	ENST00000412955	ENST00000359568		ChiTaRS3.1			BU615971	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000412955	ENST00000480896		ChiTaRS3.1			BU615971	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3CDS	ENST00000320741	ENST00000359568		ChiTaRS3.1			BU615971	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000320741	ENST00000480896		ChiTaRS3.1			BU615971	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3CDS	ENST00000444204	ENST00000359568		ChiTaRS3.1			BU615971	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000444204	ENST00000480896		ChiTaRS3.1			BU615971	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
intron-intron	ENST00000378460	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000378460	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000378460	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000378460	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000530326	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000530326	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000530326	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000530326	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000528071	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000528071	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000528071	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000528071	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000528501	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000528501	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000528501	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000528501	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000531016	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000531016	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000531016	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000531016	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000532747	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000532747	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000532747	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000532747	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000526870	ENST00000575800		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000526870	ENST00000301329		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-3UTR	ENST00000526870	ENST00000301328		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000526870	ENST00000536578		ChiTaRS3.1			BG504940	NUP160	chr11	47819401	-	GLOD4	chr17	663045	-
intron-intron	ENST00000453363	ENST00000367972		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-3UTR	ENST00000453363	ENST00000271450		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-intron	ENST00000453363	ENST00000486608		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-intron	ENST00000316193	ENST00000367972		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-3UTR	ENST00000316193	ENST00000271450		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-intron	ENST00000316193	ENST00000486608		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-intron	ENST00000329882	ENST00000367972		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-3UTR	ENST00000329882	ENST00000271450		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-intron	ENST00000329882	ENST00000486608		ChiTaRS3.1			AW949744	CSH1	chr17	61973124	-	FCGR2A	chr1	161488421	+
intron-intron	ENST00000540486	ENST00000306125		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000540486	ENST00000414533		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000540486	ENST00000470225		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000540486	ENST00000420147		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000303731	ENST00000306125		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000303731	ENST00000414533		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000303731	ENST00000470225		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000303731	ENST00000420147		ChiTaRS3.1			BU631572	TRAPPC1	chr17	7833990	+	QARS	chr3	49137626	+
intron-intron	ENST00000335754	ENST00000528251		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000335754	ENST00000530054		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000488802	ENST00000528251		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000488802	ENST00000530054		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000482349	ENST00000528251		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000482349	ENST00000530054		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000231909	ENST00000528251		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-intron	ENST00000231909	ENST00000530054		ChiTaRS3.1			CB109362	ACTR8	chr3	53916087	-	NDUFC2-KCTD14	chr11	77790908	-
intron-3CDS	ENST00000539054	ENST00000356151		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000302779		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000383716		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000463280		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000383715		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000484288		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000479241		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000536660		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000356151		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000302779		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000383716		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000463280		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000383715		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000484288		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000479241		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000536660		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000356151		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000302779		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000383716		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000463280		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000383715		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000484288		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000479241		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000536660		ChiTaRS3.1			BF445488	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
In-frame	ENST00000415930	ENST00000447866		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
Frame-shit	ENST00000415930	ENST00000368356		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-intron	ENST00000415930	ENST00000487002		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-intron	ENST00000415930	ENST00000356657		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
In-frame	ENST00000356487	ENST00000447866		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
Frame-shit	ENST00000356487	ENST00000368356		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-intron	ENST00000356487	ENST00000487002		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-intron	ENST00000356487	ENST00000356657		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
In-frame	ENST00000586425	ENST00000447866		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
Frame-shit	ENST00000586425	ENST00000368356		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-intron	ENST00000586425	ENST00000487002		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-intron	ENST00000586425	ENST00000356657		ChiTaRS3.1			CB046420	GPI	chr19	34870455	+	FDPS	chr1	155290342	+
5CDS-5UTR	ENST00000537454	ENST00000558401		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000537454	ENST00000559916		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000537454	ENST00000544417		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-intron	ENST00000537454	ENST00000559220		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000221891	ENST00000558401		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000221891	ENST00000559916		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000221891	ENST00000544417		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-intron	ENST00000221891	ENST00000559220		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000586861	ENST00000558401		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000586861	ENST00000559916		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-5UTR	ENST00000586861	ENST00000544417		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
5CDS-intron	ENST00000586861	ENST00000559220		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
intron-5UTR	ENST00000589298	ENST00000558401		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
intron-5UTR	ENST00000589298	ENST00000559916		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
intron-5UTR	ENST00000589298	ENST00000544417		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
intron-intron	ENST00000589298	ENST00000559220		ChiTaRS3.1			BI195738	APLP1	chr19	36370261	+	B2M	chr15	45003724	+
intron-5UTR	ENST00000341068	ENST00000321356		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-intron	ENST00000341068	ENST00000409769		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-intron	ENST00000341068	ENST00000434813		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-5UTR	ENST00000341068	ENST00000492793		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-5UTR	ENST00000489177	ENST00000321356		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-intron	ENST00000489177	ENST00000409769		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-intron	ENST00000489177	ENST00000434813		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
intron-5UTR	ENST00000489177	ENST00000492793		ChiTaRS3.1			AF212224	ANAPC1	chr2	112595897	+	CLK1	chr2	201729362	-
3UTR-3CDS	ENST00000534336	ENST00000301998		ChiTaRS3.1			AF288209	MALAT1	chr11	65273163	+	B3GNT2	chr2	62449387	+
3UTR-3CDS	ENST00000534336	ENST00000405767		ChiTaRS3.1			AF288209	MALAT1	chr11	65273163	+	B3GNT2	chr2	62449387	+
intron-3CDS	ENST00000306846	ENST00000216281		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000306846	ENST00000334701		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000306846	ENST00000441629		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-intron	ENST00000306846	ENST00000558600		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000436644	ENST00000216281		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000436644	ENST00000334701		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000436644	ENST00000441629		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-intron	ENST00000436644	ENST00000558600		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000338972	ENST00000216281		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000338972	ENST00000334701		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000338972	ENST00000441629		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-intron	ENST00000338972	ENST00000558600		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000514514	ENST00000216281		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000514514	ENST00000334701		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3CDS	ENST00000514514	ENST00000441629		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-intron	ENST00000514514	ENST00000558600		ChiTaRS3.1			BM709680	PAIP1	chr5	43535707	-	HSP90AA1	chr14	102551205	-
intron-3UTR	ENST00000331872	ENST00000390237		ChiTaRS3.1			AA360164	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000417584	ENST00000390237		ChiTaRS3.1			AA360164	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000311223	ENST00000390237		ChiTaRS3.1			AA360164	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000491322	ENST00000390237		ChiTaRS3.1			AA360164	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000339526	ENST00000390237		ChiTaRS3.1			AA360164	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-5UTR	ENST00000375587	ENST00000332776		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375587	ENST00000574788		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375587	ENST00000304328		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375587	ENST00000250066		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-intron	ENST00000375587	ENST00000572429		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375579	ENST00000332776		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375579	ENST00000574788		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375579	ENST00000304328		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375579	ENST00000250066		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-intron	ENST00000375579	ENST00000572429		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375576	ENST00000332776		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375576	ENST00000574788		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375576	ENST00000304328		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000375576	ENST00000250066		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
intron-intron	ENST00000375576	ENST00000572429		ChiTaRS3.1			AY624560	CENPP	chr9	95186483	-	USP6	chr17	5033229	+
5CDS-intron	ENST00000344691	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000344691	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000325074	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000437180	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000300305	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000399240	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000486278	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000494829	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000264674		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000392736		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000464456		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000472280		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000494292		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000468789		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000460814		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000433243		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
5CDS-intron	ENST00000358356	ENST00000485957		ChiTaRS3.1			L21756	RUNX1	chr21	36206707	-	MECOM	chr3	169201751	-
intron-intron	ENST00000313833	ENST00000563679		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000325823		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000447912		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000535621		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000455313		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000396410		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000569715		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000313833	ENST00000450288		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000563679		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000325823		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000447912		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000535621		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000455313		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000396410		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000569715		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000555087	ENST00000450288		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000563679		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000325823		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000447912		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000535621		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000455313		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000396410		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000569715		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
intron-intron	ENST00000440021	ENST00000450288		ChiTaRS3.1			BU930535	FBXO34	chr14	55835793	-	PDXDC1	chr16	15133866	-
5CDS-5UTR	ENST00000375514	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000375514	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000375514	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000375514	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000375514	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000375514	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-5UTR	ENST00000415876	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000415876	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000415876	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000415876	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000415876	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000415876	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-5UTR	ENST00000535165	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000535165	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000535165	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000535165	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000535165	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000535165	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
3UTR-5UTR	ENST00000493021	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
3UTR-intron	ENST00000493021	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
3UTR-intron	ENST00000493021	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
3UTR-intron	ENST00000493021	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
3UTR-intron	ENST00000493021	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
3UTR-intron	ENST00000493021	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-5UTR	ENST00000272716	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000272716	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000272716	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000272716	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000272716	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000272716	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-5UTR	ENST00000446997	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000446997	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000446997	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000446997	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000446997	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000446997	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-5UTR	ENST00000421911	ENST00000535334		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000421911	ENST00000303097		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000421911	ENST00000394222		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000421911	ENST00000539730		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000421911	ENST00000471138		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
5CDS-intron	ENST00000421911	ENST00000486562		ChiTaRS3.1			BQ338030	SLC4A10	chr2	162696386	+	ARL13B	chr3	93722615	+
Frame-shit	ENST00000394729	ENST00000407690		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000394729	ENST00000407431		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000394729	ENST00000407148		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000394729	ENST00000405938		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
5CDS-intron	ENST00000394729	ENST00000496523		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000330452	ENST00000407690		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000330452	ENST00000407431		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000330452	ENST00000407148		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
Frame-shit	ENST00000330452	ENST00000405938		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
5CDS-intron	ENST00000330452	ENST00000496523		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
intron-3CDS	ENST00000477794	ENST00000407690		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
intron-3CDS	ENST00000477794	ENST00000407431		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
intron-3CDS	ENST00000477794	ENST00000407148		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
intron-3CDS	ENST00000477794	ENST00000405938		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
intron-intron	ENST00000477794	ENST00000496523		ChiTaRS3.1			CA309863	PRKCD	chr3	53226181	-	TFIP11	chr22	26902770	+
intron-3UTR	ENST00000363840	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000363840	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000363840	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
5CDS-3UTR	ENST00000365524	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
5CDS-intron	ENST00000365524	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
5CDS-intron	ENST00000365524	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-3UTR	ENST00000364822	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000364822	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000364822	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-3UTR	ENST00000363859	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000363859	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000363859	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-3UTR	ENST00000385578	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000385578	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000385578	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-3UTR	ENST00000363146	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000363146	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000363146	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-3UTR	ENST00000364084	ENST00000371269		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000364084	ENST00000537443		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
intron-intron	ENST00000364084	ENST00000535035		ChiTaRS3.1			DB244252	GAS5	chr1	173833503	-	DHCR24	chr1	55316839	-
Frame-shit	ENST00000330387	ENST00000254108		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000330387	ENST00000380244		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000330387	ENST00000568685		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000330387	ENST00000474990		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000456390	ENST00000254108		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000456390	ENST00000380244		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000456390	ENST00000568685		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000456390	ENST00000474990		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000452463	ENST00000254108		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000452463	ENST00000380244		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000452463	ENST00000568685		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000452463	ENST00000474990		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3CDS	ENST00000458726	ENST00000254108		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3CDS	ENST00000458726	ENST00000380244		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3CDS	ENST00000458726	ENST00000568685		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3UTR	ENST00000458726	ENST00000474990		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3CDS	ENST00000468127	ENST00000254108		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3CDS	ENST00000468127	ENST00000380244		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3CDS	ENST00000468127	ENST00000568685		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3UTR	ENST00000468127	ENST00000474990		ChiTaRS3.1			AJ549095	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000260102	ENST00000470041		ChiTaRS3.1			BF243265	MRPL15	chr8	55049117	+	FAM72A	chr1	206154031	+
5CDS-intron	ENST00000260102	ENST00000468509		ChiTaRS3.1			BF243265	MRPL15	chr8	55049117	+	FAM72A	chr1	206154031	+
5CDS-intron	ENST00000260102	ENST00000367129		ChiTaRS3.1			BF243265	MRPL15	chr8	55049117	+	FAM72A	chr1	206154031	+
5CDS-intron	ENST00000260102	ENST00000367128		ChiTaRS3.1			BF243265	MRPL15	chr8	55049117	+	FAM72A	chr1	206154031	+
5CDS-intron	ENST00000260102	ENST00000341209		ChiTaRS3.1			BF243265	MRPL15	chr8	55049117	+	FAM72A	chr1	206154031	+
5CDS-intron	ENST00000260102	ENST00000607379		ChiTaRS3.1			BF243265	MRPL15	chr8	55049117	+	FAM72A	chr1	206154031	+
intron-intron	ENST00000253861	ENST00000221930		ChiTaRS3.1			BE170483	EXOC4	chr7	133697049	+	TGFB1	chr19	41856917	+
intron-intron	ENST00000539845	ENST00000221930		ChiTaRS3.1			BE170483	EXOC4	chr7	133697049	+	TGFB1	chr19	41856917	+
intron-intron	ENST00000393161	ENST00000221930		ChiTaRS3.1			BE170483	EXOC4	chr7	133697049	+	TGFB1	chr19	41856917	+
intron-intron	ENST00000545148	ENST00000221930		ChiTaRS3.1			BE170483	EXOC4	chr7	133697049	+	TGFB1	chr19	41856917	+
intron-intron	ENST00000460346	ENST00000221930		ChiTaRS3.1			BE170483	EXOC4	chr7	133697049	+	TGFB1	chr19	41856917	+
intron-intron	ENST00000541309	ENST00000221930		ChiTaRS3.1			BE170483	EXOC4	chr7	133697049	+	TGFB1	chr19	41856917	+
5CDS-5UTR	ENST00000589651	ENST00000357022		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-3UTR	ENST00000589651	ENST00000489653		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-5UTR	ENST00000589651	ENST00000394457		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-intron	ENST00000589651	ENST00000410073		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-5UTR	ENST00000270233	ENST00000357022		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-3UTR	ENST00000270233	ENST00000489653		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-5UTR	ENST00000270233	ENST00000394457		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
5CDS-intron	ENST00000270233	ENST00000410073		ChiTaRS3.1			BQ897931	BCAM	chr19	45314604	+	AHSA2	chr2	61406116	+
intron-intron	ENST00000372188	ENST00000541412		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372188	ENST00000229563		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372188	ENST00000467415		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372187	ENST00000541412		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372187	ENST00000229563		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372187	ENST00000467415		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372185	ENST00000541412		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372185	ENST00000229563		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372185	ENST00000467415		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372181	ENST00000541412		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372181	ENST00000229563		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
intron-intron	ENST00000372181	ENST00000467415		ChiTaRS3.1			AI003365	FAM213A	chr10	82182176	-	TMEM14C	chr6	10731361	-
5CDS-intron	ENST00000229239	ENST00000540235		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393930		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393931		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000310706		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000540235		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393930		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393931		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000310706		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000540235		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393930		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393931		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000310706		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000540235		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393930		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393931		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000310706		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000540235		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393930		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393931		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000310706		ChiTaRS3.1			BQ314756	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
intron-3UTR	ENST00000582730	ENST00000370544		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000582730	ENST00000370542		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-intron	ENST00000582730	ENST00000489303		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000581497	ENST00000370544		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000581497	ENST00000370542		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-intron	ENST00000581497	ENST00000489303		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000584773	ENST00000370544		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000584773	ENST00000370542		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-intron	ENST00000584773	ENST00000489303		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000585096	ENST00000370544		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000585096	ENST00000370542		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-intron	ENST00000585096	ENST00000489303		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000258962	ENST00000370544		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-3UTR	ENST00000258962	ENST00000370542		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
intron-intron	ENST00000258962	ENST00000489303		ChiTaRS3.1			CN301095	SRSF1	chr17	56083241	-	LMO4	chr1	87810839	+
5CDS-3UTR	ENST00000299238	ENST00000355957		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000361770		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000359617		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000371141		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000371132		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-intron	ENST00000299238	ENST00000496003		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000358029		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000361830		ChiTaRS3.1			AI655600	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
In-frame	ENST00000379205	ENST00000378036		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000379205	ENST00000477891		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000379205	ENST00000277632		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
In-frame	ENST00000508457	ENST00000378036		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000508457	ENST00000477891		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
5CDS-5UTR	ENST00000508457	ENST00000277632		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
intron-3CDS	ENST00000508836	ENST00000378036		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
intron-5UTR	ENST00000508836	ENST00000477891		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
intron-5UTR	ENST00000508836	ENST00000277632		ChiTaRS3.1			BF695980	C4orf46	chr4	159592767	-	FAM188A	chr10	15824225	-
intron-intron	ENST00000205061	ENST00000351960		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000205061	ENST00000358965		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000205061	ENST00000393695		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000205061	ENST00000543450		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000422840	ENST00000351960		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000422840	ENST00000358965		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000422840	ENST00000393695		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000422840	ENST00000543450		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000447066	ENST00000351960		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000447066	ENST00000358965		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000447066	ENST00000393695		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
intron-intron	ENST00000447066	ENST00000543450		ChiTaRS3.1			CA446212	GLG1	chr16	74486977	+	NUMA1	chr11	71723464	+
5CDS-intron	ENST00000267339	ENST00000571102		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000431515		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000440027		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000262300		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000574385		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000574730		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000573944		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000571102		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000431515		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000440027		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000262300		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000574385		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000574730		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000573944		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000571102		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000431515		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000440027		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000262300		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000574385		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000574730		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000573944		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000571102		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000431515		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000440027		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000262300		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000574385		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000574730		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000573944		ChiTaRS3.1			BF203978	ANKRD10	chr13	111558380	-	PKMYT1	chr16	3024657	-
3UTR-3UTR	ENST00000264956	ENST00000546057		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000377162		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-3UTR	ENST00000264956	ENST00000328963		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000535250		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000443520		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000541446		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-3UTR	ENST00000382674	ENST00000546057		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000377162		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-3UTR	ENST00000382674	ENST00000328963		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000535250		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000443520		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000541446		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000509451	ENST00000546057		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000377162		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000509451	ENST00000328963		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000535250		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000443520		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000541446		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000515113	ENST00000546057		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000377162		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000515113	ENST00000328963		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000535250		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000443520		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000541446		ChiTaRS3.1			N28327	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BC008216	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
In-frame	ENST00000537344	ENST00000582328		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000537344	ENST00000421678		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000537344	ENST00000262290		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000537344	ENST00000543544		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000582328		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000421678		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000262290		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000543544		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000582328		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000421678		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000262290		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000543544		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000582328		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000421678		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000262290		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000543544		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000582328		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000421678		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000262290		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000543544		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000582328		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000421678		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000262290		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000543544		ChiTaRS3.1			BI831720	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
5CDS-5UTR	ENST00000311015	ENST00000377093		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000311015	ENST00000263934		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000311015	ENST00000377086		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000311015	ENST00000377083		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000311015	ENST00000377081		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-intron	ENST00000311015	ENST00000465635		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000380870	ENST00000377093		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000380870	ENST00000263934		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000380870	ENST00000377086		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000380870	ENST00000377083		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000380870	ENST00000377081		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-intron	ENST00000380870	ENST00000465635		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000597810	ENST00000377093		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000597810	ENST00000263934		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000597810	ENST00000377086		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000597810	ENST00000377083		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-5UTR	ENST00000597810	ENST00000377081		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-intron	ENST00000597810	ENST00000465635		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
intron-5UTR	ENST00000594245	ENST00000377093		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
intron-5UTR	ENST00000594245	ENST00000263934		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
intron-5UTR	ENST00000594245	ENST00000377086		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
intron-5UTR	ENST00000594245	ENST00000377083		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
intron-5UTR	ENST00000594245	ENST00000377081		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
intron-intron	ENST00000594245	ENST00000465635		ChiTaRS3.1			DA666479	ZNF738	chr19	21558767	+	KIF1B	chr1	10292306	+
5CDS-3UTR	ENST00000413644	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-intron	ENST00000413644	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-3UTR	ENST00000368961	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-intron	ENST00000368961	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-3UTR	ENST00000310786	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-intron	ENST00000310786	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-3UTR	ENST00000275080	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-intron	ENST00000275080	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-3UTR	ENST00000324953	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
5CDS-intron	ENST00000324953	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
intron-3UTR	ENST00000512821	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
intron-intron	ENST00000512821	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
intron-3UTR	ENST00000504373	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
intron-intron	ENST00000504373	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
intron-3UTR	ENST00000506649	ENST00000272542		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
intron-intron	ENST00000506649	ENST00000480984		ChiTaRS3.1			BI032053	CD164	chr6	109687722	-	SLC20A1	chr2	113421204	+
3UTR-3UTR	ENST00000381440	ENST00000261590		ChiTaRS3.1			BE748457	ITPRIPL2	chr16	19131631	+	DSG2	chr18	29127527	+
3UTR-intron	ENST00000381440	ENST00000585206		ChiTaRS3.1			BE748457	ITPRIPL2	chr16	19131631	+	DSG2	chr18	29127527	+
intron-3CDS	ENST00000356341	ENST00000389301		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000356341	ENST00000568369		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000356341	ENST00000567284		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000356341	ENST00000389302		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000356341	ENST00000563673		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000356341	ENST00000534992		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000356341	ENST00000543736		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000530617	ENST00000389301		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000530617	ENST00000568369		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000530617	ENST00000567284		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000530617	ENST00000389302		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000530617	ENST00000563673		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000530617	ENST00000534992		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000530617	ENST00000543736		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000278568	ENST00000389301		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000278568	ENST00000568369		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000278568	ENST00000567284		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000278568	ENST00000389302		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000278568	ENST00000563673		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000278568	ENST00000534992		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000278568	ENST00000543736		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000528203	ENST00000389301		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000528203	ENST00000568369		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000528203	ENST00000567284		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000528203	ENST00000389302		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000528203	ENST00000563673		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000528203	ENST00000534992		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000528203	ENST00000543736		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000525542	ENST00000389301		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-3CDS	ENST00000525542	ENST00000568369		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000525542	ENST00000567284		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000525542	ENST00000389302		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000525542	ENST00000563673		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000525542	ENST00000534992		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
intron-intron	ENST00000525542	ENST00000543736		ChiTaRS3.1			BF089164	PAK1	chr11	77086478	-	FANCA	chr16	89836294	-
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA735984	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000464300	ENST00000306434		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000464300	ENST00000409017		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-intron	ENST00000464300	ENST00000490878		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000483793	ENST00000306434		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000483793	ENST00000409017		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-intron	ENST00000483793	ENST00000490878		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000465304	ENST00000306434		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000465304	ENST00000409017		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-intron	ENST00000465304	ENST00000490878		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000493645	ENST00000306434		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000493645	ENST00000409017		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-intron	ENST00000493645	ENST00000490878		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000310366	ENST00000306434		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000310366	ENST00000409017		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-intron	ENST00000310366	ENST00000490878		ChiTaRS3.1			BM823880	PARP15	chr3	122305561	-	MAT2A	chr2	85769284	+
intron-3CDS	ENST00000330720	ENST00000267584		ChiTaRS3.1			CN278364	KDELR1	chr19	48894644	-	AK7	chr14	96944903	+
intron-intron	ENST00000330720	ENST00000555570		ChiTaRS3.1			CN278364	KDELR1	chr19	48894644	-	AK7	chr14	96944903	+
intron-intron	ENST00000330720	ENST00000554313		ChiTaRS3.1			CN278364	KDELR1	chr19	48894644	-	AK7	chr14	96944903	+
intron-3CDS	ENST00000597017	ENST00000267584		ChiTaRS3.1			CN278364	KDELR1	chr19	48894644	-	AK7	chr14	96944903	+
intron-intron	ENST00000597017	ENST00000555570		ChiTaRS3.1			CN278364	KDELR1	chr19	48894644	-	AK7	chr14	96944903	+
intron-intron	ENST00000597017	ENST00000554313		ChiTaRS3.1			CN278364	KDELR1	chr19	48894644	-	AK7	chr14	96944903	+
5CDS-intron	ENST00000264771	ENST00000375976		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000211379		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000439687		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000404765		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000375964		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000362049		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000470875		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000442479		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000449450		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000417144		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000551350		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000497694		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000422756		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000425649		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000434446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000552467		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000463220		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000413922		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000454478		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000412012		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000546462		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000460147		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000383446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000361076		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000383448		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000552605		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000471376		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000415373		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000444402		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000415345		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000550393		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000461852		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000443182		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000451932		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000419847		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000552116		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000264771	ENST00000460429		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000375976		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000211379		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000439687		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000404765		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000375964		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000362049		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000470875		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000442479		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000449450		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000417144		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000551350		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000497694		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000422756		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000425649		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000434446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000552467		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000463220		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000413922		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000454478		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000412012		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000546462		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000460147		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000383446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000361076		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000383448		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000552605		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000471376		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000415373		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000444402		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000415345		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000550393		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000461852		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000443182		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000451932		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000419847		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000552116		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000515740	ENST00000460429		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000375976		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000211379		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000439687		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000404765		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000375964		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000362049		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000470875		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000442479		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000449450		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000417144		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000551350		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000497694		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000422756		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000425649		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000434446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000552467		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000463220		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000413922		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000454478		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000412012		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000546462		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000460147		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000383446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000361076		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000383448		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000552605		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000471376		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000415373		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000444402		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000415345		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000550393		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000461852		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000443182		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000451932		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000419847		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000552116		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
5CDS-intron	ENST00000508204	ENST00000460429		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000375976		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000211379		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000439687		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000404765		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000375964		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000362049		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000470875		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000442479		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000449450		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000417144		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000551350		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000497694		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000422756		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000425649		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000434446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000552467		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000463220		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000413922		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000454478		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000412012		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000546462		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000460147		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000383446		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000361076		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000383448		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000552605		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000471376		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000415373		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000444402		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000415345		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000550393		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000461852		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000443182		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000451932		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000419847		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000552116		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
intron-intron	ENST00000504180	ENST00000460429		ChiTaRS3.1			CK300020	TMEM175	chr4	952252	-	BAG6	chr6	2939433	+
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			BU539346	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
intron-3CDS	ENST00000604938	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000401010	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000339388	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000369323	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000605317	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000479926	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000604894	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3CDS	ENST00000401009	ENST00000361246		ChiTaRS3.1			CK299588	NBPF11	chr1	148195548	-	CDC42BPB	chr14	103406011	+
intron-3UTR	ENST00000229238	ENST00000553521		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000229238	ENST00000394366		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000229238	ENST00000553548		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000229238	ENST00000557154		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000229238	ENST00000451983		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000229238	ENST00000553635		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000229238	ENST00000556587		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000229238	ENST00000555349		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000229238	ENST00000554021		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543164	ENST00000553521		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543164	ENST00000394366		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543164	ENST00000553548		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543164	ENST00000557154		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543164	ENST00000451983		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543164	ENST00000553635		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543164	ENST00000556587		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543164	ENST00000555349		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543164	ENST00000554021		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543703	ENST00000553521		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543703	ENST00000394366		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543703	ENST00000553548		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543703	ENST00000557154		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543703	ENST00000451983		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543703	ENST00000553635		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-3UTR	ENST00000543703	ENST00000556587		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543703	ENST00000555349		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
intron-intron	ENST00000543703	ENST00000554021		ChiTaRS3.1			BF675494	MRPL51	chr12	6602315	-	SRSF5	chr14	70238296	+
3UTR-5UTR	ENST00000245185	ENST00000266970		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000245185	ENST00000553376		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000245185	ENST00000440311		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000245185	ENST00000354056		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-intron	ENST00000245185	ENST00000556656		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
5CDS-5UTR	ENST00000563985	ENST00000266970		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
5CDS-5UTR	ENST00000563985	ENST00000553376		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
5CDS-5UTR	ENST00000563985	ENST00000440311		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
5CDS-5UTR	ENST00000563985	ENST00000354056		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
5CDS-intron	ENST00000563985	ENST00000556656		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000561491	ENST00000266970		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000561491	ENST00000553376		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000561491	ENST00000440311		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-5UTR	ENST00000561491	ENST00000354056		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-intron	ENST00000561491	ENST00000556656		ChiTaRS3.1			AU125800	MT2A	chr16	56643384	+	CDK2	chr12	56360614	+
3UTR-intron	ENST00000287437	ENST00000558170		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000287437	ENST00000409487		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000287437	ENST00000303660		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000287437	ENST00000539609		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000287437	ENST00000493689		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000287437	ENST00000470879		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000287437	ENST00000465070		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000287437	ENST00000462355		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000522563	ENST00000558170		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000522563	ENST00000409487		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000522563	ENST00000303660		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000522563	ENST00000539609		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000522563	ENST00000493689		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000522563	ENST00000470879		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000522563	ENST00000465070		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000522563	ENST00000462355		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000517315	ENST00000558170		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000517315	ENST00000409487		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000517315	ENST00000303660		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000517315	ENST00000539609		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000517315	ENST00000493689		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000517315	ENST00000470879		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000517315	ENST00000465070		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000517315	ENST00000462355		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000521460	ENST00000558170		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000521460	ENST00000409487		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000521460	ENST00000303660		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000521460	ENST00000539609		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000521460	ENST00000493689		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000521460	ENST00000470879		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-3UTR	ENST00000521460	ENST00000465070		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
3UTR-intron	ENST00000521460	ENST00000462355		ChiTaRS3.1			W80755	NSMCE2	chr8	126379154	-	ZEB2	chr2	145270260	+
In-frame	ENST00000320095	ENST00000536769		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
In-frame	ENST00000320095	ENST00000538617		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000320095	ENST00000546120		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
In-frame	ENST00000320095	ENST00000339647		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
5CDS-intron	ENST00000320095	ENST00000536661		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000570778	ENST00000536769		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000570778	ENST00000538617		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000570778	ENST00000546120		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000570778	ENST00000339647		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
5CDS-intron	ENST00000570778	ENST00000536661		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000571814	ENST00000536769		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000571814	ENST00000538617		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000571814	ENST00000546120		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
Frame-shit	ENST00000571814	ENST00000339647		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
5CDS-intron	ENST00000571814	ENST00000536661		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
3UTR-3CDS	ENST00000571940	ENST00000536769		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
3UTR-3CDS	ENST00000571940	ENST00000538617		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
3UTR-3CDS	ENST00000571940	ENST00000546120		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
3UTR-3CDS	ENST00000571940	ENST00000339647		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
3UTR-intron	ENST00000571940	ENST00000536661		ChiTaRS3.1			CA310301	METRNL	chr17	81052121	-	UBC	chr12	125396659	+
3UTR-3CDS	ENST00000534336	ENST00000538159		ChiTaRS3.1			AW964602	MALAT1	chr11	65267967	+	USO1	chr4	76721511	+
3UTR-3CDS	ENST00000534336	ENST00000514213		ChiTaRS3.1			AW964602	MALAT1	chr11	65267967	+	USO1	chr4	76721511	+
intron-intron	ENST00000407936	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000407936	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000407936	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000405557	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000405557	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000405557	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000442738	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000442738	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000442738	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000460648	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000460648	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000460648	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000488684	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000488684	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000488684	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000606538	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000606538	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000606538	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000470701	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000470701	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000470701	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-intron	ENST00000608713	ENST00000585876		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000608713	ENST00000588831		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
intron-5UTR	ENST00000608713	ENST00000246529		ChiTaRS3.1			AI367319	POLR2F	chr22	38368717	+	LRFN3	chr19	36428389	-
5CDS-intron	ENST00000362883	ENST00000352456		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-intron	ENST00000362883	ENST00000595018		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-5UTR	ENST00000362883	ENST00000392006		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-5UTR	ENST00000362883	ENST00000378215		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-intron	ENST00000362883	ENST00000602130		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-intron	ENST00000362883	ENST00000593587		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-intron	ENST00000362883	ENST00000263367		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
5CDS-intron	ENST00000362883	ENST00000594207		ChiTaRS3.1			DB082610	SNORD104	chr17	62223512	+	HNRNPUL1	chr19	41770276	+
intron-5UTR	ENST00000311713	ENST00000261304		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000311713	ENST00000544807		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000311713	ENST00000393569		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000311713	ENST00000393568		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000311713	ENST00000554916		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-5UTR	ENST00000278856	ENST00000261304		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000278856	ENST00000544807		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000278856	ENST00000393569		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000278856	ENST00000393568		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000278856	ENST00000554916		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-5UTR	ENST00000529106	ENST00000261304		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000529106	ENST00000544807		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000529106	ENST00000393569		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000529106	ENST00000393568		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000529106	ENST00000554916		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-5UTR	ENST00000525239	ENST00000261304		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525239	ENST00000544807		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525239	ENST00000393569		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525239	ENST00000393568		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525239	ENST00000554916		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-5UTR	ENST00000525752	ENST00000261304		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525752	ENST00000544807		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525752	ENST00000393569		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525752	ENST00000393568		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000525752	ENST00000554916		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-5UTR	ENST00000540620	ENST00000261304		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000540620	ENST00000544807		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000540620	ENST00000393569		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000540620	ENST00000393568		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000540620	ENST00000554916		ChiTaRS3.1			DA803568	WDR74	chr11	62609173	-	GALC	chr14	88459517	-
intron-intron	ENST00000301764	ENST00000338316		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000301764	ENST00000537121		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000301764	ENST00000513693		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000450997	ENST00000338316		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000450997	ENST00000537121		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000450997	ENST00000513693		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
5CDS-intron	ENST00000451943	ENST00000338316		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
5CDS-intron	ENST00000451943	ENST00000537121		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
5CDS-intron	ENST00000451943	ENST00000513693		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000538470	ENST00000338316		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000538470	ENST00000537121		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000538470	ENST00000513693		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000545930	ENST00000338316		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000545930	ENST00000537121		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000545930	ENST00000513693		ChiTaRS3.1			AI079657	DDB1	chr11	61067031	+	ADCY2	chr1	152005067	+
intron-intron	ENST00000332047	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000332047	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000332047	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000354446	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000354446	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000354446	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000337090	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000337090	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000337090	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000504013	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000504013	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000504013	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000383229	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000383229	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000383229	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000513612	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000513612	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000513612	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000606977	ENST00000340645		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000606977	ENST00000393667		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-intron	ENST00000606977	ENST00000472829		ChiTaRS3.1			BQ181358	CEP63	chr3	134280219	-	GOLGB1	chr3	121409517	+
intron-3CDS	ENST00000292211	ENST00000308664		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-3CDS	ENST00000292211	ENST00000395494		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-3CDS	ENST00000292211	ENST00000539276		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-intron	ENST00000292211	ENST00000550248		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-intron	ENST00000292211	ENST00000552636		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-3CDS	ENST00000497453	ENST00000308664		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-3CDS	ENST00000497453	ENST00000395494		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-3CDS	ENST00000497453	ENST00000539276		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-intron	ENST00000497453	ENST00000550248		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
intron-intron	ENST00000497453	ENST00000552636		ChiTaRS3.1			AA431335	UBE2Q1	chr1	154522512	+	ATP2A2	chr12	110771837	-
Frame-shit	ENST00000603302	ENST00000322723		ChiTaRS3.1			BF348759	HADH	chr4	108955491	+	NCL	chr2	232322411	-
In-frame	ENST00000403312	ENST00000322723		ChiTaRS3.1			BF348759	HADH	chr4	108955491	+	NCL	chr2	232322411	-
In-frame	ENST00000309522	ENST00000322723		ChiTaRS3.1			BF348759	HADH	chr4	108955491	+	NCL	chr2	232322411	-
Frame-shit	ENST00000505878	ENST00000322723		ChiTaRS3.1			BF348759	HADH	chr4	108955491	+	NCL	chr2	232322411	-
Frame-shit	ENST00000454409	ENST00000322723		ChiTaRS3.1			BF348759	HADH	chr4	108955491	+	NCL	chr2	232322411	-
3UTR-3CDS	ENST00000510728	ENST00000322723		ChiTaRS3.1			BF348759	HADH	chr4	108955491	+	NCL	chr2	232322411	-
intron-intron	ENST00000488834	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000488834	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000488834	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000488834	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000474597	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000474597	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000474597	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000474597	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000244763	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000244763	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000244763	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000244763	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000397511	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000397511	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000397511	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000397511	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000534851	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000534851	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000534851	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000534851	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000489567	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000489567	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000489567	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000489567	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000479365	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000479365	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000479365	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000479365	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000462112	ENST00000404479		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000462112	ENST00000318709		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000462112	ENST00000459629		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
intron-intron	ENST00000462112	ENST00000409301		ChiTaRS3.1			BF818212	SSR1	chr6	7284535	-	AVL9	chr7	33042369	+
In-frame	ENST00000380737	ENST00000360540		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000380737	ENST00000544451		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000380737	ENST00000519559		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000380737	ENST00000522514		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000380737	ENST00000521344		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
In-frame	ENST00000315985	ENST00000360540		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000315985	ENST00000544451		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000315985	ENST00000519559		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000315985	ENST00000522514		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000315985	ENST00000521344		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-3CDS	ENST00000523473	ENST00000360540		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-intron	ENST00000523473	ENST00000544451		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-5UTR	ENST00000523473	ENST00000519559		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-5UTR	ENST00000523473	ENST00000522514		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-intron	ENST00000523473	ENST00000521344		ChiTaRS3.1			CB988238	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
intron-3CDS	ENST00000370873	ENST00000380087		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000370873	ENST00000380084		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-intron	ENST00000370873	ENST00000404022		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000484488	ENST00000380087		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000484488	ENST00000380084		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-intron	ENST00000484488	ENST00000404022		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000370861	ENST00000380087		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000370861	ENST00000380084		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-intron	ENST00000370861	ENST00000404022		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000370858	ENST00000380087		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-3CDS	ENST00000370858	ENST00000380084		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
intron-intron	ENST00000370858	ENST00000404022		ChiTaRS3.1			BQ685104	PSMA7	chr20	60714167	-	RBBP7	chrX	16876965	-
5CDS-intron	ENST00000438015	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000438015	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000438015	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000438015	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000438015	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000438015	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000438015	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000427383	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000428830	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
3UTR-intron	ENST00000532449	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000544373	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000534070	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000524737	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000368073		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000326837		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000368074		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000608310		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000556710		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000610139		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5CDS-intron	ENST00000278916	ENST00000475733		ChiTaRS3.1			CB142976	CHEK1	chr11	125499303	+	DCAF8	chr1	160249006	-
5UTR-intron	ENST00000263734	ENST00000476233		ChiTaRS3.1			DA843244	EPAS1	chr2	46524791	+	HNRNPA2B1	chr7	26240366	-
5UTR-intron	ENST00000263734	ENST00000354667		ChiTaRS3.1			DA843244	EPAS1	chr2	46524791	+	HNRNPA2B1	chr7	26240366	-
5UTR-intron	ENST00000263734	ENST00000356674		ChiTaRS3.1			DA843244	EPAS1	chr2	46524791	+	HNRNPA2B1	chr7	26240366	-
intron-intron	ENST00000467888	ENST00000476233		ChiTaRS3.1			DA843244	EPAS1	chr2	46524791	+	HNRNPA2B1	chr7	26240366	-
intron-intron	ENST00000467888	ENST00000354667		ChiTaRS3.1			DA843244	EPAS1	chr2	46524791	+	HNRNPA2B1	chr7	26240366	-
intron-intron	ENST00000467888	ENST00000356674		ChiTaRS3.1			DA843244	EPAS1	chr2	46524791	+	HNRNPA2B1	chr7	26240366	-
intron-3CDS	ENST00000310473	ENST00000359486		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-3CDS	ENST00000310473	ENST00000335626		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-intron	ENST00000310473	ENST00000404876		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-3CDS	ENST00000536983	ENST00000359486		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-3CDS	ENST00000536983	ENST00000335626		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-intron	ENST00000536983	ENST00000404876		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-3CDS	ENST00000542615	ENST00000359486		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-3CDS	ENST00000542615	ENST00000335626		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-intron	ENST00000542615	ENST00000404876		ChiTaRS3.1			CD366990	UCP2	chr11	73685981	+	TCF20	chr22	42606837	+
intron-intron	ENST00000368830	ENST00000533760		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368830	ENST00000397957		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368830	ENST00000316851		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000368830	ENST00000401611		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000467306	ENST00000533760		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000467306	ENST00000397957		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000467306	ENST00000316851		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000467306	ENST00000401611		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000368829	ENST00000533760		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368829	ENST00000397957		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368829	ENST00000316851		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000368829	ENST00000401611		ChiTaRS3.1			AA702716	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
In-frame	ENST00000080059	ENST00000370397		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
5CDS-intron	ENST00000080059	ENST00000590930		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
In-frame	ENST00000354334	ENST00000370397		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
5CDS-intron	ENST00000354334	ENST00000590930		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
In-frame	ENST00000552960	ENST00000370397		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
5CDS-intron	ENST00000552960	ENST00000590930		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-3CDS	ENST00000380610	ENST00000370397		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-intron	ENST00000380610	ENST00000590930		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-3CDS	ENST00000427332	ENST00000370397		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-intron	ENST00000427332	ENST00000590930		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-3CDS	ENST00000488927	ENST00000370397		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-intron	ENST00000488927	ENST00000590930		ChiTaRS3.1			DA482203	HDAC7	chr12	48213550	-	CHUK	chr10	101969547	-
intron-3CDS	ENST00000330978	ENST00000422447		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
intron-3CDS	ENST00000330978	ENST00000430553		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
intron-3CDS	ENST00000330978	ENST00000396222		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
intron-3CDS	ENST00000330978	ENST00000227157		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
intron-3CDS	ENST00000330978	ENST00000540430		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
intron-3CDS	ENST00000330978	ENST00000379412		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
intron-3CDS	ENST00000330978	ENST00000542179		ChiTaRS3.1			CA424367	BOLA2	chr16	29821934	-	LDHA	chr11	18424469	-
In-frame	ENST00000372725	ENST00000262367		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372725	ENST00000382070		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372724	ENST00000262367		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372724	ENST00000382070		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000287239	ENST00000262367		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000287239	ENST00000382070		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372714	ENST00000262367		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372714	ENST00000382070		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372711	ENST00000262367		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
In-frame	ENST00000372711	ENST00000382070		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
3UTR-3CDS	ENST00000490365	ENST00000262367		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
3UTR-3CDS	ENST00000490365	ENST00000382070		ChiTaRS3.1			AJ299261	KAT6B	chr10	76785007	+	CREBBP	chr16	3901010	-
intron-3CDS	ENST00000574590	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000574590	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000574590	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000574590	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000574590	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000575318	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000575318	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000575318	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000575318	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000575318	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000572904	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000572904	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000572904	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000572904	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000572904	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000262419	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000262419	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000262419	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000262419	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000262419	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000432791	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000432791	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000432791	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000432791	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000432791	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000393476	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000393476	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000393476	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000393476	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000393476	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000576248	ENST00000313070		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000576248	ENST00000334010		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000576248	ENST00000412584		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-3CDS	ENST00000576248	ENST00000449022		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
intron-intron	ENST00000576248	ENST00000476131		ChiTaRS3.1			BF359200	KANSL1	chr17	44123473	-	CADPS2	chr7	122114502	-
In-frame	ENST00000274695	ENST00000377075		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
5CDS-intron	ENST00000274695	ENST00000540067		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
5CDS-intron	ENST00000274695	ENST00000496186		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
intron-3CDS	ENST00000378624	ENST00000377075		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
intron-intron	ENST00000378624	ENST00000540067		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
intron-intron	ENST00000378624	ENST00000496186		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
In-frame	ENST00000378610	ENST00000377075		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
5CDS-intron	ENST00000378610	ENST00000540067		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
5CDS-intron	ENST00000378610	ENST00000496186		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
intron-3CDS	ENST00000476517	ENST00000377075		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
intron-intron	ENST00000476517	ENST00000540067		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
intron-intron	ENST00000476517	ENST00000496186		ChiTaRS3.1			BP350154	CDKAL1	chr6	20548923	+	CNNM4	chr2	97427351	+
5CDS-intron	ENST00000216268	ENST00000394003		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000361874		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000407639		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000409438		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-5UTR	ENST00000216268	ENST00000409240		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-5UTR	ENST00000216268	ENST00000409868		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000409567		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000495643		ChiTaRS3.1			DB293431	ZBED4	chr22	50277430	+	DCTN1	chr2	74618972	-
intron-3UTR	ENST00000452825	ENST00000393792		ChiTaRS3.1			BU196640	KDM5C	chrX	53243955	-	UBTD2	chr5	171637079	-
intron-3UTR	ENST00000375401	ENST00000393792		ChiTaRS3.1			BU196640	KDM5C	chrX	53243955	-	UBTD2	chr5	171637079	-
intron-3UTR	ENST00000404049	ENST00000393792		ChiTaRS3.1			BU196640	KDM5C	chrX	53243955	-	UBTD2	chr5	171637079	-
intron-3UTR	ENST00000375379	ENST00000393792		ChiTaRS3.1			BU196640	KDM5C	chrX	53243955	-	UBTD2	chr5	171637079	-
intron-3UTR	ENST00000375383	ENST00000393792		ChiTaRS3.1			BU196640	KDM5C	chrX	53243955	-	UBTD2	chr5	171637079	-
intron-3UTR	ENST00000465402	ENST00000393792		ChiTaRS3.1			BU196640	KDM5C	chrX	53243955	-	UBTD2	chr5	171637079	-
5CDS-intron	ENST00000200453	ENST00000375651		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000458062		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000608703		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000430065		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000422919		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000441618		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000449876		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000433487		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000452298		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000400040		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000383389		ChiTaRS3.1			AV705476	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
3UTR-3CDS	ENST00000375147	ENST00000232458		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
3UTR-3CDS	ENST00000375147	ENST00000392692		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
3UTR-3CDS	ENST00000375147	ENST00000427830		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
3UTR-3CDS	ENST00000375147	ENST00000417960		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
3UTR-3CDS	ENST00000375147	ENST00000441497		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
3UTR-3CDS	ENST00000375147	ENST00000540509		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
intron-3CDS	ENST00000491445	ENST00000232458		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
intron-3CDS	ENST00000491445	ENST00000392692		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
intron-3CDS	ENST00000491445	ENST00000427830		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
intron-3CDS	ENST00000491445	ENST00000417960		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
intron-3CDS	ENST00000491445	ENST00000441497		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
intron-3CDS	ENST00000491445	ENST00000540509		ChiTaRS3.1			BP238447	NCBP1	chr9	100433710	+	ECT2	chr3	172525650	+
In-frame	ENST00000446906	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000446906	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000446906	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000446906	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000446906	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
5CDS-intron	ENST00000446906	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377072	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377072	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377072	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377072	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377072	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
5CDS-intron	ENST00000377072	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000307729	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000307729	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000307729	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000307729	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000307729	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
5CDS-intron	ENST00000307729	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377059	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377059	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377059	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377059	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377059	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
5CDS-intron	ENST00000377059	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
3UTR-3CDS	ENST00000495130	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
3UTR-3CDS	ENST00000495130	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
3UTR-3CDS	ENST00000495130	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
3UTR-3CDS	ENST00000495130	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
3UTR-3CDS	ENST00000495130	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
3UTR-intron	ENST00000495130	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377100	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377100	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377100	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377100	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377100	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
5CDS-intron	ENST00000377100	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377091	ENST00000532317		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377091	ENST00000526033		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377091	ENST00000393346		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377091	ENST00000528398		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
In-frame	ENST00000377091	ENST00000356360		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
5CDS-intron	ENST00000377091	ENST00000528411		ChiTaRS3.1			AF060931	MLLT10	chr10	21827841	+	PICALM	chr11	85685856	-
intron-3UTR	ENST00000359337	ENST00000261973		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000359337	ENST00000540173		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-3UTR	ENST00000359337	ENST00000527432		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000359337	ENST00000525321		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000359337	ENST00000526754		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000359337	ENST00000532483		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-3UTR	ENST00000449103	ENST00000261973		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000449103	ENST00000540173		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-3UTR	ENST00000449103	ENST00000527432		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000449103	ENST00000525321		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000449103	ENST00000526754		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000449103	ENST00000532483		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-3UTR	ENST00000496720	ENST00000261973		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000496720	ENST00000540173		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-3UTR	ENST00000496720	ENST00000527432		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000496720	ENST00000525321		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000496720	ENST00000526754		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-intron	ENST00000496720	ENST00000532483		ChiTaRS3.1			BM979599	PLXNB2	chr22	50713472	+	RBM25	chr14	73586932	-
intron-3UTR	ENST00000339208	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000339208	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000346661	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000346661	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000345615	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000345615	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000502449	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000502449	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000591288	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000591288	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000394378	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000394378	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000585472	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000585472	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000588194	ENST00000339208		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000588194	ENST00000346661		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000345615		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000502449		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000591288		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000394378		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000585472		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000588194		ChiTaRS3.1			AA233344	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3CDS	ENST00000306247	ENST00000367602		ChiTaRS3.1			CF131680	MLKL	chr16	74706134	-	QSOX1	chr1	180158732	+
intron-3CDS	ENST00000306247	ENST00000367600		ChiTaRS3.1			CF131680	MLKL	chr16	74706134	-	QSOX1	chr1	180158732	+
intron-3CDS	ENST00000308807	ENST00000367602		ChiTaRS3.1			CF131680	MLKL	chr16	74706134	-	QSOX1	chr1	180158732	+
intron-3CDS	ENST00000308807	ENST00000367600		ChiTaRS3.1			CF131680	MLKL	chr16	74706134	-	QSOX1	chr1	180158732	+
intron-3UTR	ENST00000541428	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000541428	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000541428	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000379454	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000379454	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000379454	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000523897	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000523897	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000523897	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000522919	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000522919	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000522919	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000356457	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000356457	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000356457	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000518068	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000518068	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000518068	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000517903	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517903	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517903	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000445642	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000445642	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000445642	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000517847	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517847	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517847	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000522835	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000522835	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000522835	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000517856	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517856	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517856	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000389204	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000389204	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000389204	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000522603	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000522603	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000522603	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000379449	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000379449	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000379449	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3UTR	ENST00000517661	ENST00000328252		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517661	ENST00000534838		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-intron	ENST00000517661	ENST00000483254		ChiTaRS3.1			W31324	ASPH	chr8	62537289	+	PAPPA	chr9	119162163	-
intron-3CDS	ENST00000549578	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000549578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000360579		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000552130		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000447578		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000546588		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000549970		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			AA400996	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-5UTR	ENST00000397517	ENST00000314289		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000397517	ENST00000541204		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000397517	ENST00000509258		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000397517	ENST00000511843		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000397517	ENST00000511859		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000397517	ENST00000506706		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000397517	ENST00000511600		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000539966	ENST00000314289		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000539966	ENST00000541204		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000539966	ENST00000509258		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000539966	ENST00000511843		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000539966	ENST00000511859		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000539966	ENST00000506706		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000539966	ENST00000511600		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000481288	ENST00000314289		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000481288	ENST00000541204		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000481288	ENST00000509258		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000481288	ENST00000511843		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000481288	ENST00000511859		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000481288	ENST00000506706		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000481288	ENST00000511600		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000376547	ENST00000314289		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000376547	ENST00000541204		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-5UTR	ENST00000376547	ENST00000509258		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000376547	ENST00000511843		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3UTR	ENST00000376547	ENST00000511859		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000376547	ENST00000506706		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-intron	ENST00000376547	ENST00000511600		ChiTaRS3.1			AU125424	STK24	chr13	99116061	-	RNF4	chr4	2470870	+
intron-3CDS	ENST00000560217	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000560217	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
3UTR-3CDS	ENST00000044462	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
3UTR-3CDS	ENST00000044462	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
Frame-shit	ENST00000559082	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
Frame-shit	ENST00000559082	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
3UTR-3CDS	ENST00000413382	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
3UTR-3CDS	ENST00000413382	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000557929	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000557929	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000558281	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000558281	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
Frame-shit	ENST00000558341	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
Frame-shit	ENST00000558341	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000558094	ENST00000394936		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3CDS	ENST00000558094	ENST00000394934		ChiTaRS3.1			BU190440	PSMA4	chr15	78841523	+	PSAP	chr10	73579633	-
intron-3UTR	ENST00000344887	ENST00000343550		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000344887	ENST00000222305		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000344887	ENST00000595068		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000344887	ENST00000379134		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000344887	ENST00000594064		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000344887	ENST00000600341		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000343550		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000222305		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000595068		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000588882	ENST00000379134		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000588882	ENST00000594064		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000588882	ENST00000600341		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000343550		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000222305		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000595068		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000590463	ENST00000379134		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-intron	ENST00000590463	ENST00000594064		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
intron-3UTR	ENST00000590463	ENST00000600341		ChiTaRS3.1			AJ710555	TNNI3	chr19	55668982	-	USF2	chr19	35770334	+
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000354520	ENST00000395146		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000354520	ENST00000307808		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AF177237	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-3CDS	ENST00000441714	ENST00000262160		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000441714	ENST00000402690		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000441714	ENST00000356825		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000441714	ENST00000586040		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000441714	ENST00000591214		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-intron	ENST00000441714	ENST00000587353		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000345046	ENST00000262160		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000345046	ENST00000402690		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000345046	ENST00000356825		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000345046	ENST00000586040		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000345046	ENST00000591214		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-intron	ENST00000345046	ENST00000587353		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000458587	ENST00000262160		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000458587	ENST00000402690		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000458587	ENST00000356825		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000458587	ENST00000586040		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-3CDS	ENST00000458587	ENST00000591214		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-intron	ENST00000458587	ENST00000587353		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
Frame-shit	ENST00000468947	ENST00000262160		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
Frame-shit	ENST00000468947	ENST00000402690		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
Frame-shit	ENST00000468947	ENST00000356825		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
Frame-shit	ENST00000468947	ENST00000586040		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
Frame-shit	ENST00000468947	ENST00000591214		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
5CDS-intron	ENST00000468947	ENST00000587353		ChiTaRS3.1			BQ375829	BCAP31	chrX	152981024	-	SMAD2	chr18	45372152	-
intron-intron	ENST00000355962	ENST00000311129		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-intron	ENST00000355962	ENST00000426998		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-intron	ENST00000355962	ENST00000530787		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-3UTR	ENST00000355962	ENST00000527614		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-intron	ENST00000355962	ENST00000427203		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-intron	ENST00000355962	ENST00000341980		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-intron	ENST00000355962	ENST00000393055		ChiTaRS3.1			BG562569	TAT	chr16	71601286	-	PPP2R1B	chr11	111611006	-
intron-5UTR	ENST00000381844	ENST00000225792		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-5UTR	ENST00000381844	ENST00000450599		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-intron	ENST00000381844	ENST00000578804		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-intron	ENST00000381844	ENST00000580026		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-5UTR	ENST00000238081	ENST00000225792		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-5UTR	ENST00000238081	ENST00000450599		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-intron	ENST00000238081	ENST00000578804		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-intron	ENST00000238081	ENST00000580026		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-5UTR	ENST00000474715	ENST00000225792		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-5UTR	ENST00000474715	ENST00000450599		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-intron	ENST00000474715	ENST00000578804		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
intron-intron	ENST00000474715	ENST00000580026		ChiTaRS3.1			AU098877	YWHAQ	chr2	9724474	-	DDX5	chr17	62502407	-
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			AF361221	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
intron-intron	ENST00000392975	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392975	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392975	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000360793	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000360793	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000360793	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000584031	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000584031	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000584031	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392976	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392976	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000392976	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582297	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582297	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582297	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581573	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581573	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581573	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000448884	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000448884	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000448884	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582034	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582034	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582034	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000542042	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000542042	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000542042	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581163	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581163	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000581163	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582997	ENST00000275605		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582997	ENST00000395471		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
intron-intron	ENST00000582997	ENST00000459834		ChiTaRS3.1			BF314617	CYB561	chr17	61513478	-	PSPH	chr7	56119538	+
In-frame	ENST00000553400	ENST00000263593		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
5CDS-intron	ENST00000553400	ENST00000545756		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
5CDS-intron	ENST00000553400	ENST00000525730		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
Frame-shit	ENST00000330836	ENST00000263593		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
5CDS-intron	ENST00000330836	ENST00000545756		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
5CDS-intron	ENST00000330836	ENST00000525730		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
Frame-shit	ENST00000544005	ENST00000263593		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
5CDS-intron	ENST00000544005	ENST00000545756		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
5CDS-intron	ENST00000544005	ENST00000525730		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
intron-3CDS	ENST00000555054	ENST00000263593		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
intron-intron	ENST00000555054	ENST00000545756		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
intron-intron	ENST00000555054	ENST00000525730		ChiTaRS3.1			Z48570	DDX24	chr14	94517268	-	SIAE	chr11	124543780	+
Frame-shit	ENST00000337147	ENST00000339399		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
5CDS-intron	ENST00000337147	ENST00000473205		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
In-frame	ENST00000367075	ENST00000339399		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
5CDS-intron	ENST00000367075	ENST00000473205		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
Frame-shit	ENST00000392177	ENST00000339399		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
5CDS-intron	ENST00000392177	ENST00000473205		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
intron-3CDS	ENST00000476189	ENST00000339399		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
intron-intron	ENST00000476189	ENST00000473205		ChiTaRS3.1			BF817728	EZR	chr6	159204556	-	ANP32B	chr9	100773628	+
intron-3CDS	ENST00000411780	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000411780	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397137	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397137	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000373537	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000373537	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000414542	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000414542	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397135	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397135	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397134	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397134	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397131	ENST00000378308		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3CDS	ENST00000397131	ENST00000324545		ChiTaRS3.1			DA507643	BLCAP	chr20	36149730	+	USP9X	chrX	41075549	+
intron-3UTR	ENST00000478691	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000478691	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000478691	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000478691	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000478691	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000478691	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000478691	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000478691	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000478691	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000478691	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000478691	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374616	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374616	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374616	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374616	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374616	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000476660	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000476660	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000476660	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000476660	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000476660	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000374612	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374612	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374612	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374612	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000374612	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000302271	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000302271	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000302271	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000302271	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000302271	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000427764	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000427764	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000427764	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000427764	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000427764	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000606561	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000606561	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000606561	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000606561	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000606561	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000340208		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000424173		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000504921		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000514028		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000437473		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000510942		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3UTR	ENST00000426846	ENST00000506554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000426846	ENST00000508569		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000426846	ENST00000514015		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000426846	ENST00000539796		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-intron	ENST00000426846	ENST00000503554		ChiTaRS3.1			BG613451	HNRNPR	chr1	23670788	-	MEF2C	chr5	88017364	-
intron-3CDS	ENST00000518857	ENST00000262646		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-intron	ENST00000518857	ENST00000531289		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-intron	ENST00000518857	ENST00000529579		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-intron	ENST00000518857	ENST00000530071		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-3CDS	ENST00000395862	ENST00000262646		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-intron	ENST00000395862	ENST00000531289		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-intron	ENST00000395862	ENST00000529579		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
intron-intron	ENST00000395862	ENST00000530071		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-3CDS	ENST00000521514	ENST00000262646		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-intron	ENST00000521514	ENST00000531289		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-intron	ENST00000521514	ENST00000529579		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-intron	ENST00000521514	ENST00000530071		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-3CDS	ENST00000518738	ENST00000262646		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-intron	ENST00000518738	ENST00000531289		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-intron	ENST00000518738	ENST00000529579		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
5UTR-intron	ENST00000518738	ENST00000530071		ChiTaRS3.1			DA594015	ATP6V1C1	chr8	104033455	+	RAB2A	chr8	61471410	+
Frame-shit	ENST00000219097	ENST00000376835		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
Frame-shit	ENST00000219097	ENST00000480798		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
Frame-shit	ENST00000568364	ENST00000376835		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
Frame-shit	ENST00000568364	ENST00000480798		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
Frame-shit	ENST00000566860	ENST00000376835		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
Frame-shit	ENST00000566860	ENST00000480798		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
intron-3CDS	ENST00000575571	ENST00000376835		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
intron-3CDS	ENST00000575571	ENST00000480798		ChiTaRS3.1			BP431120	ORC6	chr16	46726341	+	CST7	chr20	24930146	+
intron-3CDS	ENST00000317089	ENST00000307877		ChiTaRS3.1			CD365788	DNAJA2	chr16	46989563	+	SRP68	chr17	74044029	+
intron-3CDS	ENST00000317089	ENST00000539137		ChiTaRS3.1			CD365788	DNAJA2	chr16	46989563	+	SRP68	chr17	74044029	+
intron-3CDS	ENST00000317089	ENST00000355113		ChiTaRS3.1			CD365788	DNAJA2	chr16	46989563	+	SRP68	chr17	74044029	+
intron-3CDS	ENST00000317089	ENST00000602720		ChiTaRS3.1			CD365788	DNAJA2	chr16	46989563	+	SRP68	chr17	74044029	+
intron-5UTR	ENST00000317089	ENST00000542536		ChiTaRS3.1			CD365788	DNAJA2	chr16	46989563	+	SRP68	chr17	74044029	+
intron-3UTR	ENST00000295767	ENST00000341049		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-intron	ENST00000295767	ENST00000393470		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-3UTR	ENST00000295767	ENST00000405348		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-intron	ENST00000295767	ENST00000393468		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-3UTR	ENST00000295767	ENST00000393467		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-3UTR	ENST00000396914	ENST00000341049		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-intron	ENST00000396914	ENST00000393470		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-3UTR	ENST00000396914	ENST00000405348		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-intron	ENST00000396914	ENST00000393468		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-3UTR	ENST00000396914	ENST00000393467		ChiTaRS3.1			BF476043	CHCHD4	chr3	14153716	+	CAV1	chr7	116200417	-
intron-3CDS	ENST00000361339	ENST00000393829		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000361339	ENST00000546249		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000361339	ENST00000537728		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000361339	ENST00000264649		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000361339	ENST00000585525		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000361339	ENST00000343619		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000361339	ENST00000544137		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3UTR	ENST00000361339	ENST00000587797		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000393829		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000546249		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000537728		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000264649		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000585525		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000343619		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000426508	ENST00000544137		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3UTR	ENST00000426508	ENST00000587797		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000393829		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000546249		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000537728		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000264649		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000585525		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000343619		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3CDS	ENST00000439987	ENST00000544137		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
intron-3UTR	ENST00000439987	ENST00000587797		ChiTaRS3.1			R84487	IFT140	chr16	1560665	-	ATP6V0A1	chr17	40673115	+
5CDS-intron	ENST00000368765	ENST00000490544		ChiTaRS3.1			DB043882	SMCP	chr1	152857043	+	C9orf43	chr9	116173207	+
5CDS-5UTR	ENST00000368765	ENST00000374165		ChiTaRS3.1			DB043882	SMCP	chr1	152857043	+	C9orf43	chr9	116173207	+
5CDS-5UTR	ENST00000368765	ENST00000288462		ChiTaRS3.1			DB043882	SMCP	chr1	152857043	+	C9orf43	chr9	116173207	+
intron-3CDS	ENST00000376957	ENST00000302907		ChiTaRS3.1			CD743028	SRM	chr1	11116695	+	RPS9	chr19	54705463	-
intron-3CDS	ENST00000376957	ENST00000391752		ChiTaRS3.1			CD743028	SRM	chr1	11116695	+	RPS9	chr19	54705463	-
intron-3CDS	ENST00000376957	ENST00000402367		ChiTaRS3.1			CD743028	SRM	chr1	11116695	+	RPS9	chr19	54705463	-
intron-3CDS	ENST00000376957	ENST00000391751		ChiTaRS3.1			CD743028	SRM	chr1	11116695	+	RPS9	chr19	54705463	-
intron-3CDS	ENST00000376957	ENST00000391753		ChiTaRS3.1			CD743028	SRM	chr1	11116695	+	RPS9	chr19	54705463	-
intron-3CDS	ENST00000376957	ENST00000441429		ChiTaRS3.1			CD743028	SRM	chr1	11116695	+	RPS9	chr19	54705463	-
intron-3UTR	ENST00000358595	ENST00000343053		ChiTaRS3.1			BG571037	ARNT	chr1	150789851	-	NELFB	chr9	140167937	+
intron-3UTR	ENST00000354396	ENST00000343053		ChiTaRS3.1			BG571037	ARNT	chr1	150789851	-	NELFB	chr9	140167937	+
intron-3UTR	ENST00000515192	ENST00000343053		ChiTaRS3.1			BG571037	ARNT	chr1	150789851	-	NELFB	chr9	140167937	+
intron-3UTR	ENST00000505755	ENST00000343053		ChiTaRS3.1			BG571037	ARNT	chr1	150789851	-	NELFB	chr9	140167937	+
intron-3UTR	ENST00000468970	ENST00000343053		ChiTaRS3.1			BG571037	ARNT	chr1	150789851	-	NELFB	chr9	140167937	+
intron-3CDS	ENST00000419783	ENST00000216146		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-5UTR	ENST00000419783	ENST00000465618		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-5UTR	ENST00000419783	ENST00000401609		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-3CDS	ENST00000419349	ENST00000216146		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-5UTR	ENST00000419349	ENST00000465618		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-5UTR	ENST00000419349	ENST00000401609		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-3CDS	ENST00000496791	ENST00000216146		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-5UTR	ENST00000496791	ENST00000465618		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
intron-5UTR	ENST00000496791	ENST00000401609		ChiTaRS3.1			BP429026	GPX1	chr3	49394925	-	RPL3	chr22	39710177	-
3UTR-3UTR	ENST00000487159	ENST00000272937		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000487159	ENST00000409160		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000487159	ENST00000409002		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000487159	ENST00000409182		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-intron	ENST00000487159	ENST00000409574		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-intron	ENST00000487159	ENST00000409356		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000327628	ENST00000272937		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000327628	ENST00000409160		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000327628	ENST00000409002		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000327628	ENST00000409182		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-intron	ENST00000327628	ENST00000409574		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-intron	ENST00000327628	ENST00000409356		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000449246	ENST00000272937		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000449246	ENST00000409160		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000449246	ENST00000409002		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000449246	ENST00000409182		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-intron	ENST00000449246	ENST00000409574		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-intron	ENST00000449246	ENST00000409356		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000341421	ENST00000272937		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000341421	ENST00000409160		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000341421	ENST00000409002		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-3UTR	ENST00000341421	ENST00000409182		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-intron	ENST00000341421	ENST00000409574		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
intron-intron	ENST00000341421	ENST00000409356		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000396175	ENST00000272937		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000396175	ENST00000409160		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000396175	ENST00000409002		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-3UTR	ENST00000396175	ENST00000409182		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-intron	ENST00000396175	ENST00000409574		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
3UTR-intron	ENST00000396175	ENST00000409356		ChiTaRS3.1			BG910237	TRAK1	chr3	42267094	+	HES6	chr2	239147463	-
Frame-shit	ENST00000367182	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000367182	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000367182	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
3UTR-3CDS	ENST00000463049	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
3UTR-3CDS	ENST00000463049	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
3UTR-5UTR	ENST00000463049	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000507825	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000507825	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000507825	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000454264	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000454264	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000454264	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-3CDS	ENST00000367183	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-3CDS	ENST00000367183	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-5UTR	ENST00000367183	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000367180	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000367180	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000367180	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000391947	ENST00000383836		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000391947	ENST00000360413		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000391947	ENST00000433332		ChiTaRS3.1			AK223293	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-3UTR	ENST00000471770	ENST00000345097		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000471770	ENST00000261302		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000471770	ENST00000557258		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-intron	ENST00000471770	ENST00000555353		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-intron	ENST00000471770	ENST00000555658		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000355749	ENST00000345097		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000355749	ENST00000261302		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000355749	ENST00000557258		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-intron	ENST00000355749	ENST00000555353		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-intron	ENST00000355749	ENST00000555658		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000467117	ENST00000345097		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000467117	ENST00000261302		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-3UTR	ENST00000467117	ENST00000557258		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-intron	ENST00000467117	ENST00000555353		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
intron-intron	ENST00000467117	ENST00000555658		ChiTaRS3.1			R98722	NDUFA5	chr7	123181133	-	FOXN3	chr14	89628096	-
Frame-shit	ENST00000376573	ENST00000543470		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
Frame-shit	ENST00000376573	ENST00000366960		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
Frame-shit	ENST00000376573	ENST00000366959		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
5CDS-3UTR	ENST00000376573	ENST00000543354		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
5CDS-3UTR	ENST00000376573	ENST00000490299		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000545335	ENST00000543470		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000545335	ENST00000366960		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000545335	ENST00000366959		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000545335	ENST00000543354		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000545335	ENST00000490299		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000323883	ENST00000543470		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000323883	ENST00000366960		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000323883	ENST00000366959		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000323883	ENST00000543354		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000323883	ENST00000490299		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000422321	ENST00000543470		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000422321	ENST00000366960		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000422321	ENST00000366959		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000422321	ENST00000543354		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000422321	ENST00000490299		ChiTaRS3.1			BC036779	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-intron	ENST00000369146	ENST00000277551		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000371372		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000277549		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000371363		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000371355		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000371357		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000277550		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000371367		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000545473		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369146	ENST00000371365		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000277551		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000371372		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000277549		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000371363		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000371355		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000371357		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000277550		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000371367		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000545473		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000369145	ENST00000371365		ChiTaRS3.1			T05132	SV2A	chr1	149875273	-	CACNA1B	chr9	140804175	-
intron-intron	ENST00000298569	ENST00000558351		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000298569	ENST00000334660		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000298569	ENST00000560397		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000393728	ENST00000558351		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000393728	ENST00000334660		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000393728	ENST00000560397		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000393725	ENST00000558351		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000393725	ENST00000334660		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000393725	ENST00000560397		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
5CDS-intron	ENST00000510164	ENST00000558351		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
5CDS-3UTR	ENST00000510164	ENST00000334660		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
5CDS-intron	ENST00000510164	ENST00000560397		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000533553	ENST00000558351		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000533553	ENST00000334660		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-intron	ENST00000533553	ENST00000560397		ChiTaRS3.1			AK225073	KIAA1191	chr5	175774497	-	CHP1	chr15	41573322	+
intron-3CDS	ENST00000476233	ENST00000430479		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000399357		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000420159		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000343495		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000242066		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000405192		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000405358		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000403527		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000405218		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000403685		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-intron	ENST00000476233	ENST00000476720		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
In-frame	ENST00000354667	ENST00000430479		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000399357		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000420159		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000343495		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000242066		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000405192		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000405358		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000403527		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000405218		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000403685		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000354667	ENST00000476720		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
In-frame	ENST00000356674	ENST00000430479		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000399357		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000420159		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000343495		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000242066		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000405192		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000405358		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000403527		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000405218		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000403685		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
5CDS-intron	ENST00000356674	ENST00000476720		ChiTaRS3.1			EF632110	HNRNPA2B1	chr7	26240192	-	ETV1	chr7	14027800	-
intron-5UTR	ENST00000342160	ENST00000279036		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000342160	ENST00000279035		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000342160	ENST00000372689		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000342160	ENST00000545755		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000342160	ENST00000535404		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000342160	ENST00000341555		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000342160	ENST00000543458		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000279036		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000279035		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000372689		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000545755		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000535404		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000341555		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000262854	ENST00000543458		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000279036		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000279035		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000372689		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000545755		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000535404		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000341555		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000474288	ENST00000543458		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000279036		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000279035		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000372689		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000545755		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000535404		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000341555		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-5UTR	ENST00000218328	ENST00000543458		ChiTaRS3.1			AK123590	HUWE1	chrX	53672370	-	PIGT	chr20	44044781	+
intron-3CDS	ENST00000234677	ENST00000229379		ChiTaRS3.1			BG205203	SARS	chr1	109760672	-	COX6A1	chr12	120876179	+
intron-3CDS	ENST00000369923	ENST00000229379		ChiTaRS3.1			BG205203	SARS	chr1	109760672	-	COX6A1	chr12	120876179	+
intron-3CDS	ENST00000468588	ENST00000229379		ChiTaRS3.1			BG205203	SARS	chr1	109760672	-	COX6A1	chr12	120876179	+
5CDS-3UTR	ENST00000337147	ENST00000257261		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000337147	ENST00000522056		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-3UTR	ENST00000337147	ENST00000278840		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000337147	ENST00000521849		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000337147	ENST00000574708		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000337147	ENST00000522639		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000337147	ENST00000517839		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-3UTR	ENST00000367075	ENST00000257261		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000367075	ENST00000522056		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-3UTR	ENST00000367075	ENST00000278840		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000367075	ENST00000521849		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000367075	ENST00000574708		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000367075	ENST00000522639		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000367075	ENST00000517839		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-3UTR	ENST00000392177	ENST00000257261		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000392177	ENST00000522056		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-3UTR	ENST00000392177	ENST00000278840		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000392177	ENST00000521849		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000392177	ENST00000574708		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000392177	ENST00000522639		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
5CDS-intron	ENST00000392177	ENST00000517839		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-3UTR	ENST00000476189	ENST00000257261		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-intron	ENST00000476189	ENST00000522056		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-3UTR	ENST00000476189	ENST00000278840		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-intron	ENST00000476189	ENST00000521849		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-intron	ENST00000476189	ENST00000574708		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-intron	ENST00000476189	ENST00000522639		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
intron-intron	ENST00000476189	ENST00000517839		ChiTaRS3.1			BQ189008	EZR	chr6	159190821	-	FADS2	chr11	61634636	+
3UTR-3CDS	ENST00000341199	ENST00000523944		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000341199	ENST00000262105		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-intron	ENST00000341199	ENST00000518680		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000430704	ENST00000523944		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000430704	ENST00000262105		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-intron	ENST00000430704	ENST00000518680		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000443967	ENST00000523944		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000443967	ENST00000262105		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-intron	ENST00000443967	ENST00000518680		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000332772	ENST00000523944		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-3CDS	ENST00000332772	ENST00000262105		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
3UTR-intron	ENST00000332772	ENST00000518680		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
intron-3CDS	ENST00000429602	ENST00000523944		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
intron-3CDS	ENST00000429602	ENST00000262105		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
intron-intron	ENST00000429602	ENST00000518680		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
intron-3CDS	ENST00000503595	ENST00000523944		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
intron-3CDS	ENST00000503595	ENST00000262105		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
intron-intron	ENST00000503595	ENST00000518680		ChiTaRS3.1			BP430816	SIMC1	chr5	175772514	+	MCM4	chr8	48889332	+
5CDS-intron	ENST00000343823	ENST00000607874		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000343823	ENST00000218147		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000343823	ENST00000359304		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000343823	ENST00000303743		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000343823	ENST00000540052		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000250635	ENST00000607874		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000250635	ENST00000218147		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000250635	ENST00000359304		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000250635	ENST00000303743		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000250635	ENST00000540052		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000545394	ENST00000607874		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000545394	ENST00000218147		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000545394	ENST00000359304		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000545394	ENST00000303743		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000545394	ENST00000540052		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000428278	ENST00000607874		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000428278	ENST00000218147		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000428278	ENST00000359304		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000428278	ENST00000303743		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000428278	ENST00000540052		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000521652	ENST00000607874		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000521652	ENST00000218147		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000521652	ENST00000359304		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000521652	ENST00000303743		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
5CDS-intron	ENST00000521652	ENST00000540052		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
intron-intron	ENST00000524263	ENST00000607874		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
intron-intron	ENST00000524263	ENST00000218147		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
intron-intron	ENST00000524263	ENST00000359304		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
intron-intron	ENST00000524263	ENST00000303743		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
intron-intron	ENST00000524263	ENST00000540052		ChiTaRS3.1			BE929491	ASH2L	chr8	37985881	+	BCORL1	chrX	129168540	+
3UTR-3UTR	ENST00000536985	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
3UTR-3UTR	ENST00000536985	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
3UTR-3UTR	ENST00000536985	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
3UTR-intron	ENST00000536985	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379789	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379789	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379789	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000379789	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000540253	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000540253	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000540253	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000540253	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000317350	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000317350	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000317350	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000317350	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379785	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379785	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379785	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000379785	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379782	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379782	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379782	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000379782	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000360521	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000360521	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000360521	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000360521	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379775	ENST00000470432		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379775	ENST00000369049		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-3UTR	ENST00000379775	ENST00000369047		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
5CDS-intron	ENST00000379775	ENST00000346569		ChiTaRS3.1			BF826291	PFKFB3	chr10	6268297	+	ECM1	chr1	150484160	+
intron-3CDS	ENST00000216281	ENST00000310343		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000216281	ENST00000524655		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000216281	ENST00000392657		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000216281	ENST00000527272		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3CDS	ENST00000334701	ENST00000310343		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000334701	ENST00000524655		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000334701	ENST00000392657		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000334701	ENST00000527272		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3CDS	ENST00000441629	ENST00000310343		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000441629	ENST00000524655		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000441629	ENST00000392657		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000441629	ENST00000527272		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3CDS	ENST00000558600	ENST00000310343		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000558600	ENST00000524655		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000558600	ENST00000392657		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
intron-3UTR	ENST00000558600	ENST00000527272		ChiTaRS3.1			BP224230	HSP90AA1	chr14	102548114	-	ARHGAP32	chr11	128840969	-
5CDS-intron	ENST00000262960	ENST00000407690		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407431		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407148		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000405938		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000496523		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407690		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407431		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407148		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000405938		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000496523		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407690		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407431		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407148		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000405938		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000496523		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407690		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407431		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407148		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000405938		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000496523		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407690		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407431		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407148		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000405938		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000496523		ChiTaRS3.1			BF977745	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
In-frame	ENST00000380492	ENST00000407597		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000380492	ENST00000424279		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000380492	ENST00000536365		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000380492	ENST00000380961		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000380492	ENST00000217964		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
5CDS-intron	ENST00000380492	ENST00000497555		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000482354	ENST00000407597		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000482354	ENST00000424279		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000482354	ENST00000536365		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000482354	ENST00000380961		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000482354	ENST00000217964		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
5CDS-intron	ENST00000482354	ENST00000497555		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000497603	ENST00000407597		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000497603	ENST00000424279		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000497603	ENST00000536365		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000497603	ENST00000380961		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
In-frame	ENST00000497603	ENST00000217964		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
5CDS-intron	ENST00000497603	ENST00000497555		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
intron-3CDS	ENST00000495110	ENST00000407597		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
intron-3CDS	ENST00000495110	ENST00000424279		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
intron-3CDS	ENST00000495110	ENST00000536365		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
intron-3CDS	ENST00000495110	ENST00000380961		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
intron-3CDS	ENST00000495110	ENST00000217964		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
intron-intron	ENST00000495110	ENST00000497555		ChiTaRS3.1			BQ436312	MOSPD2	chrX	14891882	+	TBL1X	chrX	9652079	+
5UTR-3UTR	ENST00000321153	ENST00000296255		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
5UTR-3UTR	ENST00000321153	ENST00000497289		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
5UTR-intron	ENST00000321153	ENST00000490166		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
3UTR-3UTR	ENST00000532004	ENST00000296255		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
3UTR-3UTR	ENST00000532004	ENST00000497289		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
3UTR-intron	ENST00000532004	ENST00000490166		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
5UTR-3UTR	ENST00000530797	ENST00000296255		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
5UTR-3UTR	ENST00000530797	ENST00000497289		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
5UTR-intron	ENST00000530797	ENST00000490166		ChiTaRS3.1			CD370735	RPLP2	chr11	809999	-	RPN1	chr3	128339108	+
3UTR-3CDS	ENST00000216602	ENST00000337907		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-3CDS	ENST00000216602	ENST00000377464		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000400907		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000400908		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000476556		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000216602	ENST00000460659		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-3CDS	ENST00000311141	ENST00000337907		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-3CDS	ENST00000311141	ENST00000377464		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000400907		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000400908		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000476556		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
3UTR-intron	ENST00000311141	ENST00000460659		ChiTaRS3.1			AA452109	ZFYVE21	chr14	104199765	-	RERE	chr1	8421346	+
5CDS-intron	ENST00000225726	ENST00000442956		ChiTaRS3.1			BP329425	CCDC47	chr17	61833830	-	LINC00299	chr2	8196576	+
5CDS-intron	ENST00000403162	ENST00000442956		ChiTaRS3.1			BP329425	CCDC47	chr17	61833830	-	LINC00299	chr2	8196576	+
5CDS-intron	ENST00000582252	ENST00000442956		ChiTaRS3.1			BP329425	CCDC47	chr17	61833830	-	LINC00299	chr2	8196576	+
5UTR-3CDS	ENST00000375772	ENST00000356940		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
5UTR-3CDS	ENST00000375772	ENST00000535776		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
5UTR-intron	ENST00000375772	ENST00000375802		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
5UTR-3UTR	ENST00000375772	ENST00000465772		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000375722	ENST00000356940		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000375722	ENST00000535776		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-intron	ENST00000375722	ENST00000375802		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3UTR	ENST00000375722	ENST00000465772		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000326587	ENST00000356940		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000326587	ENST00000535776		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-intron	ENST00000326587	ENST00000375802		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3UTR	ENST00000326587	ENST00000465772		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000375695	ENST00000356940		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000375695	ENST00000535776		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-intron	ENST00000375695	ENST00000375802		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3UTR	ENST00000375695	ENST00000465772		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000494718	ENST00000356940		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3CDS	ENST00000494718	ENST00000535776		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-intron	ENST00000494718	ENST00000375802		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3UTR	ENST00000494718	ENST00000465772		ChiTaRS3.1			DA944939	MAGED1	chrX	51546216	+	RAB18	chr10	27815754	+
intron-3UTR	ENST00000390548	ENST00000215582		ChiTaRS3.1			BM986730	IGHG1	chr22	23237955	-	MISP	chr19	764139	-
intron-3CDS	ENST00000398514	ENST00000589160		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000337433		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000588883		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000413984		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000588742		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000300823		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000588795		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000590089		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000398514	ENST00000454662		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000589160		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000337433		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000588883		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000413984		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000588742		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000300823		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000588795		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000590089		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000343218	ENST00000454662		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000589160		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000337433		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000588883		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000413984		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000588742		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000300823		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000588795		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000590089		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000534907	ENST00000454662		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000589160		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000337433		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000588883		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000413984		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000588742		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000300823		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000588795		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000590089		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
intron-3CDS	ENST00000504965	ENST00000454662		ChiTaRS3.1			BE766358	DPYSL3	chr5	146772101	-	ZNF226	chr19	44676239	+
In-frame	ENST00000535016	ENST00000328827		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
5CDS-intron	ENST00000535016	ENST00000547571		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
In-frame	ENST00000265872	ENST00000328827		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
5CDS-intron	ENST00000265872	ENST00000547571		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
In-frame	ENST00000543719	ENST00000328827		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
5CDS-intron	ENST00000543719	ENST00000547571		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
intron-3CDS	ENST00000483264	ENST00000328827		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
intron-intron	ENST00000483264	ENST00000547571		ChiTaRS3.1			AW391549	CCAR1	chr10	70546400	+	PAWR	chr12	79988215	-
5CDS-5UTR	ENST00000375643	ENST00000264021		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000375643	ENST00000264020		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000375643	ENST00000530872		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-intron	ENST00000375643	ENST00000527868		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5UTR-5UTR	ENST00000375629	ENST00000264021		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5UTR-5UTR	ENST00000375629	ENST00000264020		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5UTR-5UTR	ENST00000375629	ENST00000530872		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5UTR-intron	ENST00000375629	ENST00000527868		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000443024	ENST00000264021		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000443024	ENST00000264020		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000443024	ENST00000530872		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-intron	ENST00000443024	ENST00000527868		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000447699	ENST00000264021		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000447699	ENST00000264020		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-5UTR	ENST00000447699	ENST00000530872		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
5CDS-intron	ENST00000447699	ENST00000527868		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-5UTR	ENST00000375627	ENST00000264021		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-5UTR	ENST00000375627	ENST00000264020		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-5UTR	ENST00000375627	ENST00000530872		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-intron	ENST00000375627	ENST00000527868		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-5UTR	ENST00000474340	ENST00000264021		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-5UTR	ENST00000474340	ENST00000264020		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-5UTR	ENST00000474340	ENST00000530872		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-intron	ENST00000474340	ENST00000527868		ChiTaRS3.1			BE559985	IARS	chr9	95018964	-	IFT46	chr11	118430580	-
intron-3CDS	ENST00000432176	ENST00000319167		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000432176	ENST00000173898		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000432176	ENST00000399736		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000432176	ENST00000375022		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-intron	ENST00000432176	ENST00000484031		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000432176	ENST00000420798		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000432176	ENST00000375041		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3CDS	ENST00000409923	ENST00000319167		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409923	ENST00000173898		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409923	ENST00000399736		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409923	ENST00000375022		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-intron	ENST00000409923	ENST00000484031		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409923	ENST00000420798		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409923	ENST00000375041		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3CDS	ENST00000498833	ENST00000319167		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000498833	ENST00000173898		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000498833	ENST00000399736		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000498833	ENST00000375022		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-intron	ENST00000498833	ENST00000484031		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000498833	ENST00000420798		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000498833	ENST00000375041		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3CDS	ENST00000409763	ENST00000319167		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409763	ENST00000173898		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409763	ENST00000399736		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409763	ENST00000375022		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-intron	ENST00000409763	ENST00000484031		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409763	ENST00000420798		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
intron-3UTR	ENST00000409763	ENST00000375041		ChiTaRS3.1			DA805483	FAM126A	chr7	22983678	-	TRO	chrX	54957747	+
3UTR-5UTR	ENST00000400337	ENST00000496781		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-3UTR	ENST00000400337	ENST00000354488		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-intron	ENST00000400337	ENST00000380201		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-5UTR	ENST00000355480	ENST00000496781		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-3UTR	ENST00000355480	ENST00000354488		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-intron	ENST00000355480	ENST00000380201		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-5UTR	ENST00000359759	ENST00000496781		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-3UTR	ENST00000359759	ENST00000354488		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
3UTR-intron	ENST00000359759	ENST00000380201		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
intron-5UTR	ENST00000459895	ENST00000496781		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
intron-3UTR	ENST00000459895	ENST00000354488		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
intron-intron	ENST00000459895	ENST00000380201		ChiTaRS3.1			BQ448372	COL18A1	chr21	46933574	-	DDRGK1	chr20	3171224	+
intron-3UTR	ENST00000341550	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000341550	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000341550	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000341550	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000341550	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000341550	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000396807	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000396807	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000396807	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000396807	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000396807	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000396807	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000446105	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000446105	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000446105	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000446105	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000446105	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000446105	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000486287	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000486287	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000486287	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000486287	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000486287	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000486287	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000444704	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000444704	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000444704	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000444704	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000444704	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000444704	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000423703	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000423703	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000423703	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000423703	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000423703	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000423703	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000412586	ENST00000357681		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000412586	ENST00000391954		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000412586	ENST00000367218		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-3UTR	ENST00000412586	ENST00000367219		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000412586	ENST00000341360		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
intron-intron	ENST00000412586	ENST00000466407		ChiTaRS3.1			DB140747	ING4	chr12	6762413	-	ATP2B4	chr1	203710233	+
3UTR-intron	ENST00000326181	ENST00000380512		ChiTaRS3.1			CB119692	TRAF7	chr16	2227838	-	EIF4A1	chr17	7482008	+
3UTR-3UTR	ENST00000326181	ENST00000293831		ChiTaRS3.1			CB119692	TRAF7	chr16	2227838	-	EIF4A1	chr17	7482008	+
3UTR-intron	ENST00000326181	ENST00000577269		ChiTaRS3.1			CB119692	TRAF7	chr16	2227838	-	EIF4A1	chr17	7482008	+
3UTR-3UTR	ENST00000326181	ENST00000582746		ChiTaRS3.1			CB119692	TRAF7	chr16	2227838	-	EIF4A1	chr17	7482008	+
3UTR-intron	ENST00000326181	ENST00000581808		ChiTaRS3.1			CB119692	TRAF7	chr16	2227838	-	EIF4A1	chr17	7482008	+
intron-5UTR	ENST00000164024	ENST00000469379		ChiTaRS3.1			BM126628	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-3UTR	ENST00000164024	ENST00000331808		ChiTaRS3.1			BM126628	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-5UTR	ENST00000544264	ENST00000469379		ChiTaRS3.1			BM126628	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-3UTR	ENST00000544264	ENST00000331808		ChiTaRS3.1			BM126628	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-intron	ENST00000368830	ENST00000533760		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368830	ENST00000397957		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368830	ENST00000316851		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000368830	ENST00000401611		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000467306	ENST00000533760		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000467306	ENST00000397957		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000467306	ENST00000316851		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000467306	ENST00000401611		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000368829	ENST00000533760		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368829	ENST00000397957		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3UTR	ENST00000368829	ENST00000316851		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-intron	ENST00000368829	ENST00000401611		ChiTaRS3.1			AA700950	MRPL9	chr1	151734599	-	NCAM1	chr11	113148979	+
intron-3CDS	ENST00000567020	ENST00000238823		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3UTR	ENST00000567020	ENST00000403368		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3UTR	ENST00000567020	ENST00000441530		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-intron	ENST00000567020	ENST00000498340		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3CDS	ENST00000293970	ENST00000238823		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3UTR	ENST00000293970	ENST00000403368		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3UTR	ENST00000293970	ENST00000441530		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-intron	ENST00000293970	ENST00000498340		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3CDS	ENST00000434757	ENST00000238823		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3UTR	ENST00000434757	ENST00000403368		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-3UTR	ENST00000434757	ENST00000441530		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
intron-intron	ENST00000434757	ENST00000498340		ChiTaRS3.1			AI129118	TBC1D24	chr16	2569813	-	FAM98A	chr2	33810406	+
3UTR-3CDS	ENST00000582809	ENST00000344034		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000582809	ENST00000350803		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
intron-3CDS	ENST00000577616	ENST00000344034		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
intron-3CDS	ENST00000577616	ENST00000350803		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000326270	ENST00000344034		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000326270	ENST00000350803		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000346027	ENST00000344034		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000346027	ENST00000350803		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000343388	ENST00000344034		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
3UTR-3CDS	ENST00000343388	ENST00000350803		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
intron-3CDS	ENST00000542523	ENST00000344034		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
intron-3CDS	ENST00000542523	ENST00000350803		ChiTaRS3.1			BI004476	TLK2	chr17	60690291	+	PPM1G	chr2	27606916	-
In-frame	ENST00000370008	ENST00000256429		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
5CDS-intron	ENST00000370008	ENST00000579025		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
5CDS-intron	ENST00000370008	ENST00000398398		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
5CDS-intron	ENST00000370008	ENST00000583046		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
intron-3CDS	ENST00000485167	ENST00000256429		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
intron-intron	ENST00000485167	ENST00000579025		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
intron-intron	ENST00000485167	ENST00000398398		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
intron-intron	ENST00000485167	ENST00000583046		ChiTaRS3.1			BG024163	STXBP3	chr1	109295757	+	MBD2	chr18	51690923	-
3UTR-intron	ENST00000534336	ENST00000275605		ChiTaRS3.1			BQ318623	MALAT1	chr11	65267943	-	PSPH	chr7	56122079	+
3UTR-intron	ENST00000534336	ENST00000395471		ChiTaRS3.1			BQ318623	MALAT1	chr11	65267943	-	PSPH	chr7	56122079	+
3UTR-intron	ENST00000534336	ENST00000459834		ChiTaRS3.1			BQ318623	MALAT1	chr11	65267943	-	PSPH	chr7	56122079	+
intron-3CDS	ENST00000390548	ENST00000378308		ChiTaRS3.1			AW571543	IGHG1	chr14	106444676	+	USP9X	chrX	41025161	-
intron-3CDS	ENST00000390548	ENST00000324545		ChiTaRS3.1			AW571543	IGHG1	chr14	106444676	+	USP9X	chrX	41025161	-
intron-3CDS	ENST00000534863	ENST00000370025		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000534863	ENST00000370022		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000534863	ENST00000467302		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000534863	ENST00000370021		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-3CDS	ENST00000470751	ENST00000370025		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000470751	ENST00000370022		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000470751	ENST00000467302		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000470751	ENST00000370021		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-3CDS	ENST00000272902	ENST00000370025		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000272902	ENST00000370022		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000272902	ENST00000467302		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000272902	ENST00000370021		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-3CDS	ENST00000383843	ENST00000370025		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000383843	ENST00000370022		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000383843	ENST00000467302		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000383843	ENST00000370021		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-3CDS	ENST00000458465	ENST00000370025		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000458465	ENST00000370022		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000458465	ENST00000467302		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000458465	ENST00000370021		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-3CDS	ENST00000405420	ENST00000370025		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000405420	ENST00000370022		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000405420	ENST00000467302		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
intron-intron	ENST00000405420	ENST00000370021		ChiTaRS3.1			AW236721	SUMF1	chr3	4402974	+	PRPF38B	chr1	109242042	-
3UTR-3UTR	ENST00000300177	ENST00000372102		ChiTaRS3.1			CF129384	GREM1	chr15	33025331	+	TP53RK	chr20	45315095	-
intron-3UTR	ENST00000560677	ENST00000372102		ChiTaRS3.1			CF129384	GREM1	chr15	33025331	+	TP53RK	chr20	45315095	-
3UTR-3UTR	ENST00000560830	ENST00000372102		ChiTaRS3.1			CF129384	GREM1	chr15	33025331	+	TP53RK	chr20	45315095	-
3UTR-3UTR	ENST00000322805	ENST00000372102		ChiTaRS3.1			CF129384	GREM1	chr15	33025331	+	TP53RK	chr20	45315095	-
3UTR-3CDS	ENST00000270792	ENST00000360184		ChiTaRS3.1			CN480036	SH3BGRL3	chr1	26607824	-	DYNC1H1	chr14	102449881	-
3UTR-intron	ENST00000270792	ENST00000556791		ChiTaRS3.1			CN480036	SH3BGRL3	chr1	26607824	-	DYNC1H1	chr14	102449881	-
3UTR-3CDS	ENST00000319041	ENST00000360184		ChiTaRS3.1			CN480036	SH3BGRL3	chr1	26607824	-	DYNC1H1	chr14	102449881	-
3UTR-intron	ENST00000319041	ENST00000556791		ChiTaRS3.1			CN480036	SH3BGRL3	chr1	26607824	-	DYNC1H1	chr14	102449881	-
intron-3UTR	ENST00000262960	ENST00000311956		ChiTaRS3.1			AW190431	DPP9	chr19	4675845	+	ARHGAP1	chr11	46699468	+
intron-3UTR	ENST00000598800	ENST00000311956		ChiTaRS3.1			AW190431	DPP9	chr19	4675845	+	ARHGAP1	chr11	46699468	+
intron-3UTR	ENST00000597849	ENST00000311956		ChiTaRS3.1			AW190431	DPP9	chr19	4675845	+	ARHGAP1	chr11	46699468	+
intron-3UTR	ENST00000594671	ENST00000311956		ChiTaRS3.1			AW190431	DPP9	chr19	4675845	+	ARHGAP1	chr11	46699468	+
intron-3UTR	ENST00000601173	ENST00000311956		ChiTaRS3.1			AW190431	DPP9	chr19	4675845	+	ARHGAP1	chr11	46699468	+
intron-intron	ENST00000275605	ENST00000275605		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000275605	ENST00000395471		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000275605	ENST00000459834		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000395471	ENST00000275605		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000395471	ENST00000395471		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000395471	ENST00000459834		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000459834	ENST00000275605		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000459834	ENST00000395471		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
intron-intron	ENST00000459834	ENST00000459834		ChiTaRS3.1			CB241697	PSPH	chr7	56125734	-	PSPH	chr7	56123443	+
5CDS-3UTR	ENST00000378449	ENST00000199389		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000378449	ENST00000536084		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000378449	ENST00000495565		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-3UTR	ENST00000433649	ENST00000199389		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000433649	ENST00000536084		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000433649	ENST00000495565		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-3UTR	ENST00000268876	ENST00000199389		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000268876	ENST00000536084		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000268876	ENST00000495565		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-3UTR	ENST00000394570	ENST00000199389		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000394570	ENST00000536084		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000394570	ENST00000495565		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-3UTR	ENST00000591048	ENST00000199389		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000591048	ENST00000536084		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
5CDS-intron	ENST00000591048	ENST00000495565		ChiTaRS3.1			Z17841	UNC45B	chr17	33495104	+	EIF2AK1	chr7	6064091	-
Frame-shit	ENST00000284154	ENST00000222339		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000284154	ENST00000600245		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000284154	ENST00000359044		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
Frame-shit	ENST00000573099	ENST00000222339		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000573099	ENST00000600245		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000573099	ENST00000359044		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
Frame-shit	ENST00000395635	ENST00000222339		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000395635	ENST00000600245		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000395635	ENST00000359044		ChiTaRS3.1			DA434962	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
3UTR-intron	ENST00000313949	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
intron-intron	ENST00000371098	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000371075	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000371100	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
intron-intron	ENST00000371099	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000371102	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000464624	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
intron-intron	ENST00000306120	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000371095	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000371085	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000354359	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000265620	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
3UTR-intron	ENST00000306090	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
intron-intron	ENST00000371081	ENST00000390548		ChiTaRS3.1			BE939829	GNAS	chr20	57486077	+	IGHG1	chr2	89246957	-
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ207762	ETV6	chr12	12033885	+	RUNX1	chr21	36408483	-
intron-3CDS	ENST00000395965	ENST00000377191		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000395965	ENST00000430571		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000395965	ENST00000539513		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000505869	ENST00000377191		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000505869	ENST00000430571		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000505869	ENST00000539513		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000509739	ENST00000377191		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000509739	ENST00000430571		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000509739	ENST00000539513		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000509163	ENST00000377191		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000509163	ENST00000430571		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000509163	ENST00000539513		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000504768	ENST00000377191		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000504768	ENST00000430571		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000504768	ENST00000539513		ChiTaRS3.1			BP273629	FAM172A	chr5	93018889	-	XRN2	chr20	21309207	+
intron-3CDS	ENST00000537971	ENST00000292599		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3UTR	ENST00000537971	ENST00000503050		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3CDS	ENST00000011898	ENST00000292599		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3UTR	ENST00000011898	ENST00000503050		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3CDS	ENST00000407263	ENST00000292599		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3UTR	ENST00000407263	ENST00000503050		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3CDS	ENST00000492305	ENST00000292599		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3UTR	ENST00000492305	ENST00000503050		ChiTaRS3.1			AA687466	TSPAN9	chr12	3320841	+	MAML1	chr5	179195990	-
intron-3UTR	ENST00000226951	ENST00000394440		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-5UTR	ENST00000226951	ENST00000461540		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000226951	ENST00000544079		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000226951	ENST00000544185		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000226951	ENST00000538252		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000442825	ENST00000394440		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-5UTR	ENST00000442825	ENST00000461540		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000442825	ENST00000544079		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000442825	ENST00000544185		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000442825	ENST00000538252		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000507719	ENST00000394440		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-5UTR	ENST00000507719	ENST00000461540		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000507719	ENST00000544079		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000507719	ENST00000544185		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000507719	ENST00000538252		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000515667	ENST00000394440		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-5UTR	ENST00000515667	ENST00000461540		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000515667	ENST00000544079		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000515667	ENST00000544185		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-3UTR	ENST00000515667	ENST00000538252		ChiTaRS3.1			BE698729	CLNK	chr4	10602071	-	CCT4	chr2	62095781	-
intron-5UTR	ENST00000372189	ENST00000358506		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372189	ENST00000296122		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372189	ENST00000395366		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372195	ENST00000358506		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372195	ENST00000296122		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372195	ENST00000395366		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372190	ENST00000358506		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372190	ENST00000296122		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000372190	ENST00000395366		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000481260	ENST00000358506		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000481260	ENST00000296122		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
intron-5UTR	ENST00000481260	ENST00000395366		ChiTaRS3.1			T06907	RAPGEF1	chr9	134453266	-	PPP1CB	chr2	28974976	+
3UTR-5UTR	ENST00000534336	ENST00000264071		ChiTaRS3.1			DA073851	MALAT1	chr11	65266760	+	TUBB4A	chr19	6502323	-
3UTR-intron	ENST00000534336	ENST00000540257		ChiTaRS3.1			DA073851	MALAT1	chr11	65266760	+	TUBB4A	chr19	6502323	-
3UTR-5UTR	ENST00000534336	ENST00000601152		ChiTaRS3.1			DA073851	MALAT1	chr11	65266760	+	TUBB4A	chr19	6502323	-
3UTR-5UTR	ENST00000534336	ENST00000598006		ChiTaRS3.1			DA073851	MALAT1	chr11	65266760	+	TUBB4A	chr19	6502323	-
3UTR-5UTR	ENST00000534336	ENST00000596926		ChiTaRS3.1			DA073851	MALAT1	chr11	65266760	+	TUBB4A	chr19	6502323	-
intron-3UTR	ENST00000372390	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372390	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372390	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000372390	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372397	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372397	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372397	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000372397	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000315660	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000315660	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000315660	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000315660	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372383	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372383	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372383	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000372383	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372384	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372384	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372384	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000372384	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372382	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372382	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000372382	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000372382	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000506081	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000506081	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000506081	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000506081	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000514426	ENST00000519685		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000514426	ENST00000522948		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000514426	ENST00000251822		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-intron	ENST00000514426	ENST00000523918		ChiTaRS3.1			AW801061	TSC22D3	chrX	106957017	-	RHOBTB2	chr8	22875292	+
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BF095087	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000390237	ENST00000377604		ChiTaRS3.1			AW627635	IGKC	chr2	89156852	+	RBM10	chrX	47046021	-
intron-3UTR	ENST00000390237	ENST00000329236		ChiTaRS3.1			AW627635	IGKC	chr2	89156852	+	RBM10	chrX	47046021	-
intron-3UTR	ENST00000390237	ENST00000345781		ChiTaRS3.1			AW627635	IGKC	chr2	89156852	+	RBM10	chrX	47046021	-
intron-intron	ENST00000390237	ENST00000478410		ChiTaRS3.1			AW627635	IGKC	chr2	89156852	+	RBM10	chrX	47046021	-
intron-3UTR	ENST00000473414	ENST00000375749		ChiTaRS3.1			BE621420	COMMD2	chr3	149458981	-	POFUT1	chr20	30824255	+
intron-intron	ENST00000473414	ENST00000375730		ChiTaRS3.1			BE621420	COMMD2	chr3	149458981	-	POFUT1	chr20	30824255	+
intron-intron	ENST00000473414	ENST00000539210		ChiTaRS3.1			BE621420	COMMD2	chr3	149458981	-	POFUT1	chr20	30824255	+
intron-intron	ENST00000473414	ENST00000486717		ChiTaRS3.1			BE621420	COMMD2	chr3	149458981	-	POFUT1	chr20	30824255	+
intron-3CDS	ENST00000323853	ENST00000267229		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-3CDS	ENST00000323853	ENST00000438737		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-3CDS	ENST00000323853	ENST00000438724		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-intron	ENST00000323853	ENST00000461008		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-3CDS	ENST00000349783	ENST00000267229		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-3CDS	ENST00000349783	ENST00000438737		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-3CDS	ENST00000349783	ENST00000438724		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-intron	ENST00000349783	ENST00000461008		ChiTaRS3.1			BE812865	SNRNP200	chr2	96941052	-	RBM26	chr13	79911291	-
intron-3UTR	ENST00000265097	ENST00000281821		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000265097	ENST00000409854		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000265097	ENST00000409938		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000265097	ENST00000392071		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-5UTR	ENST00000265097	ENST00000469354		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-3UTR	ENST00000514861	ENST00000281821		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000514861	ENST00000409854		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000514861	ENST00000409938		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000514861	ENST00000392071		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-5UTR	ENST00000514861	ENST00000469354		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-3UTR	ENST00000513482	ENST00000281821		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000513482	ENST00000409854		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000513482	ENST00000409938		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000513482	ENST00000392071		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-5UTR	ENST00000513482	ENST00000469354		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-3UTR	ENST00000510300	ENST00000281821		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000510300	ENST00000409854		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000510300	ENST00000409938		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-intron	ENST00000510300	ENST00000392071		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-5UTR	ENST00000510300	ENST00000469354		ChiTaRS3.1			AW386073	THOC3	chr5	175387097	-	EPHA4	chr2	222283454	-
intron-3CDS	ENST00000454903	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000454903	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000454903	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-intron	ENST00000454903	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000406242	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000406242	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000406242	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-intron	ENST00000406242	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604404	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604404	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604404	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000604404	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000435734	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000435734	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000435734	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000435734	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000603181	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000603181	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000603181	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000603181	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604255	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604255	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604255	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000604255	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000346446	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000346446	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000346446	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000346446	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000344013	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000344013	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000344013	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000344013	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000603449	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000603449	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000603449	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-intron	ENST00000603449	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000406988	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000406988	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000406988	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000406988	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605550	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605550	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605550	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-intron	ENST00000605550	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604804	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604804	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604804	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000604804	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605552	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605552	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605552	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-intron	ENST00000605552	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000535103	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000535103	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000535103	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000535103	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000603524	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000603524	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000603524	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000603524	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604621	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604621	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-3CDS	ENST00000604621	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-intron	ENST00000604621	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605677	ENST00000336139		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605677	ENST00000530393		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-3CDS	ENST00000605677	ENST00000529691		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
intron-intron	ENST00000605677	ENST00000525391		ChiTaRS3.1			AI274165	FXYD3	chr19	35614487	-	ZNF202	chr11	123596885	+
3UTR-5UTR	ENST00000227507	ENST00000371225		ChiTaRS3.1			X77754	CCND1	chr11	69466276	+	TACSTD2	chr1	59042897	-
intron-5UTR	ENST00000536559	ENST00000371225		ChiTaRS3.1			X77754	CCND1	chr11	69466276	+	TACSTD2	chr1	59042897	-
intron-3UTR	ENST00000536039	ENST00000373129		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000536039	ENST00000373130		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000536039	ENST00000373132		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000536039	ENST00000482458		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000536039	ENST00000359297		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000373129		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000373130		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000373132		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000437374	ENST00000482458		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000359297		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000373129		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000373130		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000373132		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000420381	ENST00000482458		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000359297		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000373129		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000373130		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000373132		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000428780	ENST00000482458		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000359297		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000373129		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000373130		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000373132		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000434470	ENST00000482458		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000359297		ChiTaRS3.1			CB529143	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
5UTR-5UTR	ENST00000263734	ENST00000418604		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
5UTR-5UTR	ENST00000263734	ENST00000303958		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
5UTR-5UTR	ENST00000263734	ENST00000361621		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
5UTR-intron	ENST00000263734	ENST00000466486		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
intron-5UTR	ENST00000467888	ENST00000418604		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
intron-5UTR	ENST00000467888	ENST00000303958		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
intron-5UTR	ENST00000467888	ENST00000361621		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
intron-intron	ENST00000467888	ENST00000466486		ChiTaRS3.1			DA387913	EPAS1	chr2	46524725	+	PLP1	chrX	103031798	+
intron-3CDS	ENST00000401779	ENST00000326648		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000401779	ENST00000416172		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000401779	ENST00000559364		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-3CDS	ENST00000329363	ENST00000326648		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000329363	ENST00000416172		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000329363	ENST00000559364		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-3CDS	ENST00000403326	ENST00000326648		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000403326	ENST00000416172		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000403326	ENST00000559364		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-3CDS	ENST00000405135	ENST00000326648		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000405135	ENST00000416172		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000405135	ENST00000559364		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-3CDS	ENST00000428989	ENST00000326648		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000428989	ENST00000416172		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
intron-intron	ENST00000428989	ENST00000559364		ChiTaRS3.1			AW135599	ODF3B	chr22	50968939	+	ZNF609	chr15	64967823	-
Frame-shit	ENST00000495032	ENST00000534328		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
Frame-shit	ENST00000495032	ENST00000332231		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
Frame-shit	ENST00000495032	ENST00000448903		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
5CDS-intron	ENST00000495032	ENST00000525891		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000434063	ENST00000534328		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000434063	ENST00000332231		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000434063	ENST00000448903		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-intron	ENST00000434063	ENST00000525891		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000429611	ENST00000534328		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000429611	ENST00000332231		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000429611	ENST00000448903		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-intron	ENST00000429611	ENST00000525891		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000425358	ENST00000534328		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000425358	ENST00000332231		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-3CDS	ENST00000425358	ENST00000448903		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
3UTR-intron	ENST00000425358	ENST00000525891		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-3CDS	ENST00000428939	ENST00000534328		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-3CDS	ENST00000428939	ENST00000332231		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-3CDS	ENST00000428939	ENST00000448903		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-intron	ENST00000428939	ENST00000525891		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-3CDS	ENST00000593300	ENST00000534328		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-3CDS	ENST00000593300	ENST00000332231		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-3CDS	ENST00000593300	ENST00000448903		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
intron-intron	ENST00000593300	ENST00000525891		ChiTaRS3.1			DA758044	HOTAIRM1	chr7	27135943	+	AP2A2	chr11	926035	+
5CDS-3UTR	ENST00000359591	ENST00000368575		ChiTaRS3.1			AL834518	LRP10	chr14	23346660	+	RAB13	chr1	153954374	-
5CDS-5UTR	ENST00000359591	ENST00000462680		ChiTaRS3.1			AL834518	LRP10	chr14	23346660	+	RAB13	chr1	153954374	-
intron-3UTR	ENST00000546834	ENST00000368575		ChiTaRS3.1			AL834518	LRP10	chr14	23346660	+	RAB13	chr1	153954374	-
intron-5UTR	ENST00000546834	ENST00000462680		ChiTaRS3.1			AL834518	LRP10	chr14	23346660	+	RAB13	chr1	153954374	-
3UTR-3UTR	ENST00000470660	ENST00000368575		ChiTaRS3.1			AL834518	LRP10	chr14	23346660	+	RAB13	chr1	153954374	-
3UTR-5UTR	ENST00000470660	ENST00000462680		ChiTaRS3.1			AL834518	LRP10	chr14	23346660	+	RAB13	chr1	153954374	-
intron-3CDS	ENST00000384756	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384756	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384756	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000384756	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000364799	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000364799	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000364799	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000364799	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384693	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384693	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384693	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000384693	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000383926	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000383926	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000383926	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000383926	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000516331	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000516331	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000516331	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000516331	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384706	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384706	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384706	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000384706	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
In-frame	ENST00000363981	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
In-frame	ENST00000363981	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
In-frame	ENST00000363981	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
5CDS-3UTR	ENST00000363981	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384147	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384147	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000384147	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000384147	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000365607	ENST00000464451		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000365607	ENST00000243253		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3CDS	ENST00000365607	ENST00000424880		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
intron-3UTR	ENST00000365607	ENST00000483956		ChiTaRS3.1			DA769011	SNHG1	chr11	62622486	-	SEC61A1	chr3	127785924	+
Frame-shit	ENST00000300835	ENST00000394332		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
Frame-shit	ENST00000300835	ENST00000394333		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
Frame-shit	ENST00000300835	ENST00000479035		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
5CDS-5UTR	ENST00000300835	ENST00000245857		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
5CDS-5UTR	ENST00000300835	ENST00000577407		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
Frame-shit	ENST00000542965	ENST00000394332		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
Frame-shit	ENST00000542965	ENST00000394333		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
Frame-shit	ENST00000542965	ENST00000479035		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
5CDS-5UTR	ENST00000542965	ENST00000245857		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
5CDS-5UTR	ENST00000542965	ENST00000577407		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
intron-3CDS	ENST00000571654	ENST00000394332		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
intron-3CDS	ENST00000571654	ENST00000394333		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
intron-3CDS	ENST00000571654	ENST00000479035		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
intron-5UTR	ENST00000571654	ENST00000245857		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
intron-5UTR	ENST00000571654	ENST00000577407		ChiTaRS3.1			DB573606	PRR14	chr16	30667544	+	RPL23	chr17	37008919	-
5UTR-5UTR	ENST00000537916	ENST00000382952		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-intron	ENST00000537916	ENST00000290921		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-5UTR	ENST00000537916	ENST00000510568		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-intron	ENST00000537916	ENST00000515690		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-5UTR	ENST00000240093	ENST00000382952		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-intron	ENST00000240093	ENST00000290921		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-5UTR	ENST00000240093	ENST00000510568		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
5UTR-intron	ENST00000240093	ENST00000515690		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
intron-5UTR	ENST00000517911	ENST00000382952		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
intron-intron	ENST00000517911	ENST00000290921		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
intron-5UTR	ENST00000517911	ENST00000510568		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
intron-intron	ENST00000517911	ENST00000515690		ChiTaRS3.1			DB495584	FZD3	chr8	28351860	+	CTBP1	chr4	1235309	-
intron-3UTR	ENST00000216218	ENST00000230640		ChiTaRS3.1			AW794579	ST13	chr22	41221658	-	SKIV2L2	chr5	54720936	+
intron-intron	ENST00000216218	ENST00000545714		ChiTaRS3.1			AW794579	ST13	chr22	41221658	-	SKIV2L2	chr5	54720936	+
intron-intron	ENST00000216218	ENST00000504388		ChiTaRS3.1			AW794579	ST13	chr22	41221658	-	SKIV2L2	chr5	54720936	+
intron-intron	ENST00000052754	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000052754	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000052754	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000052754	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000052754	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000052754	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000052754	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000052754	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000425043	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000425043	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000425043	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000425043	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000425043	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000425043	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000425043	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000425043	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000393155	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000393155	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000393155	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000393155	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000393155	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000393155	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000393155	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000393155	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000228329	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000228329	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000228329	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000228329	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000228329	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000228329	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000228329	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000228329	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000303320	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000303320	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000303320	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000303320	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000303320	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000303320	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000303320	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000303320	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000552962	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000552962	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000552962	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000552962	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000552962	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000552962	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000552962	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000552962	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000441303	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000441303	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000441303	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000441303	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000441303	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000441303	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000441303	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000441303	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000420120	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000420120	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000420120	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000420120	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000420120	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000420120	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000420120	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000420120	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000547568	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000547568	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000547568	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000547568	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000547568	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000547568	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000547568	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000547568	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000456569	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000456569	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000456569	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000456569	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000456569	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000456569	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000456569	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000456569	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546370	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546370	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000546370	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000546370	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000546370	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546370	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546370	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546370	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546745	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546745	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000546745	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000546745	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000546745	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546745	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546745	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000546745	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000550099	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000550099	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000550099	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000550099	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000550099	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000550099	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000550099	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000550099	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000551354	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000551354	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000551354	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000551354	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000551354	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000551354	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000551354	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000551354	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000548768	ENST00000488834		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000548768	ENST00000474597		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000548768	ENST00000244763		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000548768	ENST00000397511		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3UTR	ENST00000548768	ENST00000534851		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000548768	ENST00000489567		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000548768	ENST00000479365		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-intron	ENST00000548768	ENST00000462112		ChiTaRS3.1			M14219	DCN	chr12	91539704	-	SSR1	chr6	7288539	-
intron-3CDS	ENST00000462705	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000393785	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000481632	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000471418	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000357258	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000464560	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000488663	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
intron-3CDS	ENST00000474710	ENST00000541515		ChiTaRS3.1			BP397490	ZBTB20	chr3	114079363	-	LUC7L2	chr7	139026155	+
5CDS-5UTR	ENST00000521913	ENST00000248958		ChiTaRS3.1			BT006944	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
5CDS-5UTR	ENST00000311151	ENST00000248958		ChiTaRS3.1			BT006944	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
5CDS-5UTR	ENST00000523027	ENST00000248958		ChiTaRS3.1			BT006944	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
intron-5UTR	ENST00000521983	ENST00000248958		ChiTaRS3.1			BT006944	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
intron-3CDS	ENST00000441714	ENST00000535781		ChiTaRS3.1			BF766561	BCAP31	chrX	152967495	-	PRPF6	chr20	62659849	+
intron-3CDS	ENST00000345046	ENST00000535781		ChiTaRS3.1			BF766561	BCAP31	chrX	152967495	-	PRPF6	chr20	62659849	+
intron-3CDS	ENST00000458587	ENST00000535781		ChiTaRS3.1			BF766561	BCAP31	chrX	152967495	-	PRPF6	chr20	62659849	+
intron-3CDS	ENST00000468947	ENST00000535781		ChiTaRS3.1			BF766561	BCAP31	chrX	152967495	-	PRPF6	chr20	62659849	+
Frame-shit	ENST00000297156	ENST00000508244		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
Frame-shit	ENST00000297156	ENST00000274258		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
Frame-shit	ENST00000297156	ENST00000425232		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
5CDS-5UTR	ENST00000297156	ENST00000512288		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
Frame-shit	ENST00000514518	ENST00000508244		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
Frame-shit	ENST00000514518	ENST00000274258		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
Frame-shit	ENST00000514518	ENST00000425232		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
5CDS-5UTR	ENST00000514518	ENST00000512288		ChiTaRS3.1			DA056654	CAMLG	chr5	134074482	+	C5orf42	chr5	37121887	-
intron-intron	ENST00000446845	ENST00000367469		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
intron-intron	ENST00000446845	ENST00000367467		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
intron-intron	ENST00000446845	ENST00000470750		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
3UTR-intron	ENST00000311806	ENST00000367469		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
3UTR-intron	ENST00000311806	ENST00000367467		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
3UTR-intron	ENST00000311806	ENST00000470750		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
intron-intron	ENST00000492714	ENST00000367469		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
intron-intron	ENST00000492714	ENST00000367467		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
intron-intron	ENST00000492714	ENST00000470750		ChiTaRS3.1			BP368746	OXSR1	chr3	38295914	+	SASH1	chr6	148865017	+
Frame-shit	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
5CDS-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
5CDS-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
5CDS-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
Frame-shit	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
5CDS-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE812485	SMARCB1	chr22	24175782	+	SMARCB1	chr22	24133946	+
3UTR-intron	ENST00000327064	ENST00000263390		ChiTaRS3.1			BQ009863	CARM1	chr19	11033302	-	MED26	chr19	16629046	+
3UTR-intron	ENST00000344150	ENST00000263390		ChiTaRS3.1			BQ009863	CARM1	chr19	11033302	-	MED26	chr19	16629046	+
intron-3CDS	ENST00000398073	ENST00000313640		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000398073	ENST00000313624		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000398073	ENST00000398762		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-5UTR	ENST00000398073	ENST00000476830		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000548823	ENST00000313640		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000548823	ENST00000313624		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000548823	ENST00000398762		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-5UTR	ENST00000548823	ENST00000476830		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000547701	ENST00000313640		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000547701	ENST00000313624		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000547701	ENST00000398762		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-5UTR	ENST00000547701	ENST00000476830		ChiTaRS3.1			AA910485	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000359125	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359125	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359125	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359125	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000359125	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000359125	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000357249	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000357249	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000357249	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000357249	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000357249	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000357249	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359689	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359689	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359689	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000359689	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000359689	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000359689	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000354587	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000354587	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000354587	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000354587	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000354587	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000354587	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000360480	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000360480	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000360480	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000360480	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000360480	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000360480	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000370224	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000370224	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000370224	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000370224	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000370224	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000370224	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344462	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344462	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344462	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344462	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000344462	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000344462	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000482957	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000482957	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000482957	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000482957	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000482957	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000482957	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344425	ENST00000472174		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344425	ENST00000532642		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344425	ENST00000236067		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3CDS	ENST00000344425	ENST00000471859		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000344425	ENST00000472277		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000344425	ENST00000498664		ChiTaRS3.1			DA064555	KCNQ2	chr20	62066135	-	ATP6V0B	chr1	44442008	+
intron-3UTR	ENST00000466764	ENST00000456098		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-3UTR	ENST00000466764	ENST00000337514		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000466764	ENST00000481539		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000466764	ENST00000392904		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000466764	ENST00000424202		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000466764	ENST00000307046		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-3UTR	ENST00000376759	ENST00000456098		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-3UTR	ENST00000376759	ENST00000337514		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000376759	ENST00000481539		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000376759	ENST00000392904		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000376759	ENST00000424202		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000376759	ENST00000307046		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-3UTR	ENST00000430348	ENST00000456098		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-3UTR	ENST00000430348	ENST00000337514		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000430348	ENST00000481539		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000430348	ENST00000392904		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000430348	ENST00000424202		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000430348	ENST00000307046		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-3UTR	ENST00000376755	ENST00000456098		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-3UTR	ENST00000376755	ENST00000337514		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000376755	ENST00000481539		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000376755	ENST00000392904		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000376755	ENST00000424202		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
intron-intron	ENST00000376755	ENST00000307046		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-3UTR	ENST00000354480	ENST00000456098		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-3UTR	ENST00000354480	ENST00000337514		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000354480	ENST00000481539		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000354480	ENST00000392904		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000354480	ENST00000424202		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-intron	ENST00000354480	ENST00000307046		ChiTaRS3.1			AI740954	RBM3	chrX	48436428	-	IGF1	chr12	102790960	+
3UTR-5UTR	ENST00000370179	ENST00000488498		ChiTaRS3.1			AI589829	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
3UTR-intron	ENST00000370179	ENST00000368243		ChiTaRS3.1			AI589829	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-5UTR	ENST00000370177	ENST00000488498		ChiTaRS3.1			AI589829	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-intron	ENST00000370177	ENST00000368243		ChiTaRS3.1			AI589829	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-5UTR	ENST00000473620	ENST00000488498		ChiTaRS3.1			AI589829	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-intron	ENST00000473620	ENST00000368243		ChiTaRS3.1			AI589829	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-3CDS	ENST00000285667	ENST00000389857		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000285667	ENST00000331194		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000285667	ENST00000389856		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000285667	ENST00000553403		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000285667	ENST00000554165		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000544452	ENST00000389857		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000544452	ENST00000331194		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000544452	ENST00000389856		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000544452	ENST00000553403		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000544452	ENST00000554165		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000478035	ENST00000389857		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000478035	ENST00000331194		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000478035	ENST00000389856		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000478035	ENST00000553403		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000478035	ENST00000554165		ChiTaRS3.1			AU124561	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
Frame-shit	ENST00000249396	ENST00000374272		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
5CDS-5UTR	ENST00000249396	ENST00000483052		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
In-frame	ENST00000392081	ENST00000374272		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
5CDS-5UTR	ENST00000392081	ENST00000483052		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
In-frame	ENST00000358931	ENST00000374272		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
5CDS-5UTR	ENST00000358931	ENST00000483052		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
intron-3CDS	ENST00000481381	ENST00000374272		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
intron-5UTR	ENST00000481381	ENST00000483052		ChiTaRS3.1			DA894739	SIRT2	chr19	39384459	-	TRIM63	chr1	26394125	-
intron-intron	ENST00000225964	ENST00000293872		ChiTaRS3.1			BF882409	COL1A1	chr17	48263746	-	LUC7L	chr16	277388	-
intron-intron	ENST00000225964	ENST00000337351		ChiTaRS3.1			BF882409	COL1A1	chr17	48263746	-	LUC7L	chr16	277388	-
intron-intron	ENST00000225964	ENST00000397783		ChiTaRS3.1			BF882409	COL1A1	chr17	48263746	-	LUC7L	chr16	277388	-
intron-5UTR	ENST00000225964	ENST00000397780		ChiTaRS3.1			BF882409	COL1A1	chr17	48263746	-	LUC7L	chr16	277388	-
intron-intron	ENST00000225964	ENST00000494366		ChiTaRS3.1			BF882409	COL1A1	chr17	48263746	-	LUC7L	chr16	277388	-
intron-3UTR	ENST00000405402	ENST00000354817		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
intron-intron	ENST00000405402	ENST00000527202		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
intron-3UTR	ENST00000405402	ENST00000532502		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
3UTR-3UTR	ENST00000253458	ENST00000354817		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
3UTR-intron	ENST00000253458	ENST00000527202		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
3UTR-3UTR	ENST00000253458	ENST00000532502		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
3UTR-3UTR	ENST00000393243	ENST00000354817		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
3UTR-intron	ENST00000393243	ENST00000527202		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
3UTR-3UTR	ENST00000393243	ENST00000532502		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
intron-3UTR	ENST00000471070	ENST00000354817		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
intron-intron	ENST00000471070	ENST00000527202		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
intron-3UTR	ENST00000471070	ENST00000532502		ChiTaRS3.1			AU117141	GSE1	chr16	85709522	+	FAR1	chr11	13752533	+
intron-3CDS	ENST00000261978	ENST00000260402		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000261978	ENST00000557821		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000261978	ENST00000456256		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-intron	ENST00000261978	ENST00000543785		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000556690	ENST00000260402		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000556690	ENST00000557821		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000556690	ENST00000456256		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-intron	ENST00000556690	ENST00000543785		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000557425	ENST00000260402		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000557425	ENST00000557821		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000557425	ENST00000456256		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-intron	ENST00000557425	ENST00000543785		ChiTaRS3.1			AK095454	LTBP2	chr14	75038461	-	PLCB2	chr15	40583530	-
intron-3CDS	ENST00000360822	ENST00000357702		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000360822	ENST00000259235		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000360822	ENST00000259234		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000359309	ENST00000357702		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000359309	ENST00000259235		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000359309	ENST00000259234		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000349780	ENST00000357702		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000349780	ENST00000259235		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000349780	ENST00000259234		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000360190	ENST00000357702		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000360190	ENST00000259235		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000360190	ENST00000259234		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000480467	ENST00000357702		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000480467	ENST00000259235		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000480467	ENST00000259234		ChiTaRS3.1			AA972005	CDK5RAP2	chr9	123151203	+	SAP130	chr2	128712759	+
intron-3CDS	ENST00000556029	ENST00000432884		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000556029	ENST00000262942		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000556029	ENST00000471960		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000343315	ENST00000432884		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000343315	ENST00000262942		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000343315	ENST00000471960		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3CDS	ENST00000266732	ENST00000432884		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3CDS	ENST00000266732	ENST00000262942		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3UTR	ENST00000266732	ENST00000471960		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000393053	ENST00000432884		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000393053	ENST00000262942		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000393053	ENST00000471960		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000261210	ENST00000432884		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000261210	ENST00000262942		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000261210	ENST00000471960		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000548223	ENST00000432884		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000548223	ENST00000262942		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000548223	ENST00000471960		ChiTaRS3.1			AW393518	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			HW088351	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			HW088351	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
5UTR-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			HW088351	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
5UTR-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			HW088351	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
intron-3UTR	ENST00000544484	ENST00000422424		ChiTaRS3.1			BE698608	CHD4	chr12	6690472	-	FAM96B	chr16	66966092	-
intron-3UTR	ENST00000357008	ENST00000422424		ChiTaRS3.1			BE698608	CHD4	chr12	6690472	-	FAM96B	chr16	66966092	-
intron-3UTR	ENST00000309577	ENST00000422424		ChiTaRS3.1			BE698608	CHD4	chr12	6690472	-	FAM96B	chr16	66966092	-
intron-3UTR	ENST00000544040	ENST00000422424		ChiTaRS3.1			BE698608	CHD4	chr12	6690472	-	FAM96B	chr16	66966092	-
intron-3UTR	ENST00000540960	ENST00000422424		ChiTaRS3.1			BE698608	CHD4	chr12	6690472	-	FAM96B	chr16	66966092	-
intron-3UTR	ENST00000209873	ENST00000378069		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000209873	ENST00000536181		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000209873	ENST00000538942		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000209873	ENST00000487544		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-3UTR	ENST00000394384	ENST00000378069		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000394384	ENST00000536181		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000394384	ENST00000538942		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000394384	ENST00000487544		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-3UTR	ENST00000550286	ENST00000378069		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000550286	ENST00000536181		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000550286	ENST00000538942		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000550286	ENST00000487544		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-3UTR	ENST00000549983	ENST00000378069		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000549983	ENST00000536181		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000549983	ENST00000538942		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-intron	ENST00000549983	ENST00000487544		ChiTaRS3.1			AW794716	AAAS	chr12	53701363	-	MAOB	chrX	43626432	-
intron-5UTR	ENST00000392474	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000538733	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000337174	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000347034	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000324774	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000545538	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000412367	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000404169	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000402834	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000446440	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000392473	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-5UTR	ENST00000535524	ENST00000359534		ChiTaRS3.1			BM836721	CAMKK2	chr12	121677140	-	KCNK5	chr6	39197059	-
intron-intron	ENST00000585331	ENST00000450651		ChiTaRS3.1			DW416891	PSMG2	chr18	12696484	-	PI4KAP2	chr22	21831702	-
intron-intron	ENST00000317615	ENST00000450651		ChiTaRS3.1			DW416891	PSMG2	chr18	12696484	-	PI4KAP2	chr22	21831702	-
intron-intron	ENST00000590217	ENST00000450651		ChiTaRS3.1			DW416891	PSMG2	chr18	12696484	-	PI4KAP2	chr22	21831702	-
intron-intron	ENST00000589405	ENST00000450651		ChiTaRS3.1			DW416891	PSMG2	chr18	12696484	-	PI4KAP2	chr22	21831702	-
Frame-shit	ENST00000513761	ENST00000369603		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000513761	ENST00000369592		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
5CDS-5UTR	ENST00000513761	ENST00000471297		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000347613	ENST00000369603		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000347613	ENST00000369592		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
5CDS-5UTR	ENST00000347613	ENST00000471297		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000360642	ENST00000369603		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000360642	ENST00000369592		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
5CDS-5UTR	ENST00000360642	ENST00000471297		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000504131	ENST00000369603		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
Frame-shit	ENST00000504131	ENST00000369592		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
5CDS-5UTR	ENST00000504131	ENST00000471297		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
intron-3CDS	ENST00000506924	ENST00000369603		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
intron-3CDS	ENST00000506924	ENST00000369592		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
intron-5UTR	ENST00000506924	ENST00000471297		ChiTaRS3.1			H05577	CLCN3	chr4	170634332	+	SMNDC1	chr10	112063316	-
intron-3UTR	ENST00000339697	ENST00000439817		ChiTaRS3.1			DA527785	SERINC1	chr6	122777733	-	MGEA5	chr10	103545384	-
intron-3UTR	ENST00000339697	ENST00000361464		ChiTaRS3.1			DA527785	SERINC1	chr6	122777733	-	MGEA5	chr10	103545384	-
intron-intron	ENST00000339697	ENST00000482611		ChiTaRS3.1			DA527785	SERINC1	chr6	122777733	-	MGEA5	chr10	103545384	-
intron-intron	ENST00000339697	ENST00000357797		ChiTaRS3.1			DA527785	SERINC1	chr6	122777733	-	MGEA5	chr10	103545384	-
intron-intron	ENST00000339697	ENST00000370094		ChiTaRS3.1			DA527785	SERINC1	chr6	122777733	-	MGEA5	chr10	103545384	-
intron-intron	ENST00000339697	ENST00000419011		ChiTaRS3.1			DA527785	SERINC1	chr6	122777733	-	MGEA5	chr10	103545384	-
intron-3UTR	ENST00000393977	ENST00000270189		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000429089		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000220809		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000352041		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000393977	ENST00000519510		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000393977	ENST00000429710		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000393977	ENST00000524009		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000270189		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000429089		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000220809		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000352041		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000377503	ENST00000519510		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000377503	ENST00000429710		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000377503	ENST00000524009		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000270189		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000429089		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000220809		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000352041		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000257536	ENST00000519510		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000257536	ENST00000429710		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000257536	ENST00000524009		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000270189		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000429089		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000220809		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000352041		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000541762	ENST00000519510		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000541762	ENST00000429710		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000541762	ENST00000524009		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000270189		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000429089		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000220809		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000352041		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000519673	ENST00000519510		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000519673	ENST00000429710		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000519673	ENST00000524009		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000270189		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000429089		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000220809		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000352041		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-3UTR	ENST00000505287	ENST00000519510		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000505287	ENST00000429710		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000505287	ENST00000524009		ChiTaRS3.1			BF765970	CCNJL	chr5	159686516	-	PLAT	chr8	42033257	-
intron-intron	ENST00000410024	ENST00000410024		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000410024	ENST00000409295		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000410024	ENST00000409091		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000350033		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000410017		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000373608		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000410024		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000409295		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000409091		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000350033		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000410017		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000373608		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000410024		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000409295		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000409091		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000350033		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000410017		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000373608		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000410024		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000409295		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000409091		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000350033		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000410017		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000373608		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000410024		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000409295		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000409091		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000350033		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000410017		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000373608		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000410024		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000409295		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000409091		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000350033		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000410017		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000373608		ChiTaRS3.1			BF975110	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			S78159	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000394609	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000394609	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000405240	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000405240	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000357376	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000357376	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000317610	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000317610	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000357732	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000357732	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000337526	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000337526	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000394611	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000394611	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000404909	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000404909	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000486085	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000486085	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000354474	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000354474	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000402434	ENST00000315368		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
intron-3CDS	ENST00000402434	ENST00000510092		ChiTaRS3.1			W68781	RTN4	chr2	55209717	-	ANAPC4	chr4	25419961	+
In-frame	ENST00000566983	ENST00000447866		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000566983	ENST00000368356		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000566983	ENST00000487002		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000566983	ENST00000356657		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000268261	ENST00000447866		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000268261	ENST00000368356		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000268261	ENST00000487002		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000268261	ENST00000356657		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000539622	ENST00000447866		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000539622	ENST00000368356		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000539622	ENST00000487002		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000539622	ENST00000356657		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000537352	ENST00000447866		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000537352	ENST00000368356		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000537352	ENST00000487002		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000537352	ENST00000356657		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000569958	ENST00000447866		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
In-frame	ENST00000569958	ENST00000368356		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000569958	ENST00000487002		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-intron	ENST00000569958	ENST00000356657		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000565837	ENST00000447866		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-3CDS	ENST00000565837	ENST00000368356		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-intron	ENST00000565837	ENST00000487002		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
intron-intron	ENST00000565837	ENST00000356657		ChiTaRS3.1			BM555536	PMM2	chr16	8906963	+	FDPS	chr1	155287732	+
5CDS-3UTR	ENST00000268695	ENST00000497512		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000268695	ENST00000316355		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000268695	ENST00000354403		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000268695	ENST00000502280		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000268695	ENST00000395640		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000268695	ENST00000509972		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000542788	ENST00000497512		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000542788	ENST00000316355		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000542788	ENST00000354403		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000542788	ENST00000502280		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000542788	ENST00000395640		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000542788	ENST00000509972		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000565364	ENST00000497512		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000565364	ENST00000316355		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000565364	ENST00000354403		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000565364	ENST00000502280		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000565364	ENST00000395640		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5UTR-3UTR	ENST00000565364	ENST00000509972		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000568311	ENST00000497512		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000568311	ENST00000316355		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000568311	ENST00000354403		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000568311	ENST00000502280		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000568311	ENST00000395640		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000568311	ENST00000509972		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000569433	ENST00000497512		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000569433	ENST00000316355		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000569433	ENST00000354403		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000569433	ENST00000502280		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000569433	ENST00000395640		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
5CDS-3UTR	ENST00000569433	ENST00000509972		ChiTaRS3.1			DN998848	GALNS	chr16	88923166	-	CCNG2	chr4	78079686	+
intron-3UTR	ENST00000447925	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000435379	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000266505	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000539875	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000534932	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000538330	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000541695	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
intron-3UTR	ENST00000542762	ENST00000204679		ChiTaRS3.1			BU588824	PLCZ1	chr12	18845841	+	GNPTG	chr16	1413162	+
3UTR-intron	ENST00000257261	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000257261	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000257261	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000257261	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522056	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522056	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522056	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522056	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000278840	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000278840	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000278840	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
3UTR-intron	ENST00000278840	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000521849	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000521849	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000521849	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000521849	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000574708	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000574708	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000574708	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000574708	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522639	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522639	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522639	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000522639	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000517839	ENST00000337147		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000517839	ENST00000367075		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000517839	ENST00000392177		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000517839	ENST00000476189		ChiTaRS3.1			BQ184412	FADS2	chr11	61634636	-	EZR	chr6	159190821	+
intron-intron	ENST00000309134	ENST00000452313		ChiTaRS3.1			AA115561	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000534025	ENST00000452313		ChiTaRS3.1			AA115561	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000525069	ENST00000452313		ChiTaRS3.1			AA115561	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000528117	ENST00000452313		ChiTaRS3.1			AA115561	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-3UTR	ENST00000587100	ENST00000336787		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
intron-3UTR	ENST00000587100	ENST00000396307		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
intron-intron	ENST00000587100	ENST00000564609		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
intron-intron	ENST00000587100	ENST00000569493		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
intron-intron	ENST00000587100	ENST00000561545		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-3UTR	ENST00000588790	ENST00000336787		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-3UTR	ENST00000588790	ENST00000396307		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-intron	ENST00000588790	ENST00000564609		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-intron	ENST00000588790	ENST00000569493		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-intron	ENST00000588790	ENST00000561545		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-3UTR	ENST00000458408	ENST00000336787		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-3UTR	ENST00000458408	ENST00000396307		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-intron	ENST00000458408	ENST00000564609		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-intron	ENST00000458408	ENST00000569493		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
5CDS-intron	ENST00000458408	ENST00000561545		ChiTaRS3.1			BF218939	CCDC159	chr19	11465303	+	RAB27A	chr15	55497015	-
3UTR-3UTR	ENST00000264357	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
3UTR-3UTR	ENST00000264357	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
3UTR-intron	ENST00000264357	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000542149	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000542149	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-intron	ENST00000542149	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000371251	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000371251	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-intron	ENST00000371251	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
3UTR-3UTR	ENST00000371256	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
3UTR-3UTR	ENST00000371256	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
3UTR-intron	ENST00000371256	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000541091	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000541091	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-intron	ENST00000541091	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000371266	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000371266	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-intron	ENST00000371266	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000371264	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000371264	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-intron	ENST00000371264	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000479118	ENST00000374012		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000479118	ENST00000439301		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-intron	ENST00000479118	ENST00000481202		ChiTaRS3.1			X82068	GRIA3	chrX	122622610	+	PHF20	chr20	34537177	+
intron-3UTR	ENST00000377799	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377799	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377766	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000412821	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000358282	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000351358	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000457442	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000452380	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000322191		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000342512		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000371774		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000307534		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000488990	ENST00000488482		ChiTaRS3.1			BF825680	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000225964	ENST00000560626		ChiTaRS3.1			AA621525	COL1A1	chr17	48261710	-	PEAK1	chr15	77401103	-
intron-intron	ENST00000225964	ENST00000558305		ChiTaRS3.1			AA621525	COL1A1	chr17	48261710	-	PEAK1	chr15	77401103	-
intron-intron	ENST00000225964	ENST00000567337		ChiTaRS3.1			AA621525	COL1A1	chr17	48261710	-	PEAK1	chr15	77401103	-
intron-3UTR	ENST00000225964	ENST00000312493		ChiTaRS3.1			AA621525	COL1A1	chr17	48261710	-	PEAK1	chr15	77401103	-
3UTR-3CDS	ENST00000490491	ENST00000578681		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000490491	ENST00000583590		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000490491	ENST00000359353		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000490491	ENST00000389924		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000490491	ENST00000457800		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-intron	ENST00000490491	ENST00000582985		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000368276	ENST00000578681		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000368276	ENST00000583590		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000368276	ENST00000359353		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000368276	ENST00000389924		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000368276	ENST00000457800		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-intron	ENST00000368276	ENST00000582985		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000320139	ENST00000578681		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000320139	ENST00000583590		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000320139	ENST00000359353		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000320139	ENST00000389924		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3CDS	ENST00000320139	ENST00000457800		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-intron	ENST00000320139	ENST00000582985		ChiTaRS3.1			BM992075	PMF1-BGLAP	chr1	156212984	-	DDX42	chr17	61895087	-
3UTR-3UTR	ENST00000591090	ENST00000346178		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000591090	ENST00000356638		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000591090	ENST00000534779		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000591090	ENST00000540933		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000591090	ENST00000534422		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-3UTR	ENST00000357332	ENST00000346178		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000357332	ENST00000356638		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000357332	ENST00000534779		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000357332	ENST00000540933		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
3UTR-intron	ENST00000357332	ENST00000534422		ChiTaRS3.1			AI339818	ASNA1	chr19	12858955	-	GANAB	chr11	62392488	+
5UTR-5UTR	ENST00000342129	ENST00000446326		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000342129	ENST00000289816		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000342129	ENST00000568064		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000342129	ENST00000443381		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000446326		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000289816		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000568064		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000443381		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000446326		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000289816		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000568064		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000443381		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000446326		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000289816		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000568064		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000443381		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000446326		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000289816		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000568064		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000443381		ChiTaRS3.1			AF354755	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
intron-3CDS	ENST00000421745	ENST00000345003		ChiTaRS3.1			DB445243	BIRC6	chr2	32676903	-	GYG1	chr3	148714087	+
intron-3CDS	ENST00000421745	ENST00000296048		ChiTaRS3.1			DB445243	BIRC6	chr2	32676903	-	GYG1	chr3	148714087	+
intron-3CDS	ENST00000421745	ENST00000483267		ChiTaRS3.1			DB445243	BIRC6	chr2	32676903	-	GYG1	chr3	148714087	+
intron-3CDS	ENST00000421745	ENST00000484197		ChiTaRS3.1			DB445243	BIRC6	chr2	32676903	-	GYG1	chr3	148714087	+
intron-intron	ENST00000421745	ENST00000479119		ChiTaRS3.1			DB445243	BIRC6	chr2	32676903	-	GYG1	chr3	148714087	+
intron-3CDS	ENST00000374825	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000374825	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000374825	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000374825	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000496118	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000496118	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000496118	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000496118	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000580234	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000580234	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000580234	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000580234	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000374831	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000374831	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000374831	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000374831	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000395289	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000395289	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000395289	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000395289	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000443797	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000443797	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000443797	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000443797	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000395287	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000395287	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000395287	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000395287	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000449085	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000449085	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000449085	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000449085	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000438194	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000438194	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000438194	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000438194	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000466744	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000466744	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000466744	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000466744	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000383108	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000383108	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000383108	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000383108	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000547895	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000547895	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000547895	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000547895	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000549843	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000549843	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000549843	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000549843	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000442863	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000442863	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000442863	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000442863	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000552513	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000552513	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000552513	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000552513	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000442219	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000442219	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000442219	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000442219	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000498329	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000498329	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000498329	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000498329	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000488549	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000488549	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000488549	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000488549	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000425201	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000425201	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000425201	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000425201	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000399529	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000399529	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000399529	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000399529	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000399528	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000399528	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000399528	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000399528	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000550142	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000550142	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000550142	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000550142	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000548837	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000548837	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000548837	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000548837	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000399527	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000399527	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000399527	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000399527	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000549236	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000549236	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000549236	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000549236	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000482105	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000482105	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000482105	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000482105	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000414731	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000414731	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000414731	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000414731	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000449118	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000449118	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000449118	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000449118	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000550598	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000550598	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000550598	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000550598	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000479973	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000479973	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000479973	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000479973	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000546777	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000546777	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000546777	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000546777	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000450320	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000450320	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000450320	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000450320	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000547286	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-3CDS	ENST00000547286	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000547286	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
intron-intron	ENST00000547286	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000552587	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000552587	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000552587	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000552587	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000549126	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000549126	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000549126	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000549126	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000553146	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000553146	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000553146	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000553146	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000448067	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000448067	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000448067	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000448067	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000436979	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
In-frame	ENST00000436979	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000436979	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5CDS-intron	ENST00000436979	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
3UTR-3CDS	ENST00000466208	ENST00000255559		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
3UTR-3CDS	ENST00000466208	ENST00000542342		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
3UTR-intron	ENST00000466208	ENST00000579988		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
3UTR-intron	ENST00000466208	ENST00000579732		ChiTaRS3.1			AI990714	BRD2	chr6	4426338	-	SLC39A11	chr17	70943897	+
5UTR-5UTR	ENST00000306434	ENST00000361272		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
5UTR-5UTR	ENST00000306434	ENST00000523917		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
5UTR-intron	ENST00000306434	ENST00000518885		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
intron-5UTR	ENST00000409017	ENST00000361272		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
intron-5UTR	ENST00000409017	ENST00000523917		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
intron-intron	ENST00000409017	ENST00000518885		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
intron-5UTR	ENST00000490878	ENST00000361272		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
intron-5UTR	ENST00000490878	ENST00000523917		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
intron-intron	ENST00000490878	ENST00000518885		ChiTaRS3.1			BM749134	MAT2A	chr2	85766396	+	CNOT7	chr8	17104270	-
3UTR-3UTR	ENST00000466801	ENST00000466801		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
3UTR-3UTR	ENST00000466801	ENST00000409321		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
3UTR-3UTR	ENST00000466801	ENST00000409115		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
3UTR-3UTR	ENST00000466801	ENST00000341369		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
3UTR-3UTR	ENST00000466801	ENST00000409683		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
3UTR-3UTR	ENST00000466801	ENST00000410064		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409321	ENST00000466801		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409321	ENST00000409321		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409321	ENST00000409115		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409321	ENST00000341369		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409321	ENST00000409683		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409321	ENST00000410064		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409115	ENST00000466801		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409115	ENST00000409321		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409115	ENST00000409115		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409115	ENST00000341369		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409115	ENST00000409683		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409115	ENST00000410064		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000341369	ENST00000466801		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000341369	ENST00000409321		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000341369	ENST00000409115		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000341369	ENST00000341369		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000341369	ENST00000409683		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000341369	ENST00000410064		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409683	ENST00000466801		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409683	ENST00000409321		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409683	ENST00000409115		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409683	ENST00000341369		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409683	ENST00000409683		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000409683	ENST00000410064		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000410064	ENST00000466801		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000410064	ENST00000409321		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000410064	ENST00000409115		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000410064	ENST00000341369		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000410064	ENST00000409683		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
5CDS-3UTR	ENST00000410064	ENST00000410064		ChiTaRS3.1			AA356995	PTMA	chr2	232577540	+	PTMA	chr2	232576117	-
intron-3UTR	ENST00000262940	ENST00000254976		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000262940	ENST00000304886		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000262940	ENST00000495883		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000461209	ENST00000254976		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000461209	ENST00000304886		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000461209	ENST00000495883		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000449970	ENST00000254976		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000449970	ENST00000304886		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000449970	ENST00000495883		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000462172	ENST00000254976		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000462172	ENST00000304886		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000462172	ENST00000495883		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000521822	ENST00000254976		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000521822	ENST00000304886		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
intron-3UTR	ENST00000521822	ENST00000495883		ChiTaRS3.1			DA524284	RASA4	chr7	102246371	-	SNAP25	chr20	10287139	+
5CDS-3UTR	ENST00000215909	ENST00000486442		ChiTaRS3.1			BF245376	LGALS1	chr22	38074609	+	KLHL29	chr2	23931235	+
3UTR-3UTR	ENST00000489315	ENST00000486442		ChiTaRS3.1			BF245376	LGALS1	chr22	38074609	+	KLHL29	chr2	23931235	+
intron-3CDS	ENST00000602866	ENST00000272645		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-3CDS	ENST00000602866	ENST00000409955		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-5UTR	ENST00000602866	ENST00000487079		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-5UTR	ENST00000602866	ENST00000409698		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-3CDS	ENST00000298852	ENST00000272645		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-3CDS	ENST00000298852	ENST00000409955		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-5UTR	ENST00000298852	ENST00000487079		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-5UTR	ENST00000298852	ENST00000409698		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-3CDS	ENST00000530912	ENST00000272645		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-3CDS	ENST00000530912	ENST00000409955		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-5UTR	ENST00000530912	ENST00000487079		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-5UTR	ENST00000530912	ENST00000409698		ChiTaRS3.1			BU183660	PSMC3	chr11	47440326	-	POLR2D	chr2	128605713	-
intron-3UTR	ENST00000496335	ENST00000398073		ChiTaRS3.1			BG828185	PDAP1	chr7	98998003	-	CTDSP2	chr12	58215188	-
intron-intron	ENST00000496335	ENST00000548823		ChiTaRS3.1			BG828185	PDAP1	chr7	98998003	-	CTDSP2	chr12	58215188	-
intron-intron	ENST00000496335	ENST00000547701		ChiTaRS3.1			BG828185	PDAP1	chr7	98998003	-	CTDSP2	chr12	58215188	-
intron-3UTR	ENST00000350498	ENST00000398073		ChiTaRS3.1			BG828185	PDAP1	chr7	98998003	-	CTDSP2	chr12	58215188	-
intron-intron	ENST00000350498	ENST00000548823		ChiTaRS3.1			BG828185	PDAP1	chr7	98998003	-	CTDSP2	chr12	58215188	-
intron-intron	ENST00000350498	ENST00000547701		ChiTaRS3.1			BG828185	PDAP1	chr7	98998003	-	CTDSP2	chr12	58215188	-
intron-3CDS	ENST00000538546	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
Frame-shit	ENST00000535623	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
Frame-shit	ENST00000535011	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
intron-3CDS	ENST00000542996	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
Frame-shit	ENST00000249364	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
intron-3CDS	ENST00000449187	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
Frame-shit	ENST00000479257	ENST00000291568		ChiTaRS3.1			BU940644	CALU	chr7	128394363	+	CSTB	chr21	45194550	-
5CDS-3UTR	ENST00000417172	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
5CDS-3UTR	ENST00000417172	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000361388	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000361388	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000422748	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000422748	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000361675	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000361675	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000361901	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000361901	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000393118	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000393118	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000495522	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000495522	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000424922	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000424922	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000543443	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
3UTR-3UTR	ENST00000543443	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
intron-3UTR	ENST00000466704	ENST00000398022		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
intron-3UTR	ENST00000466704	ENST00000217315		ChiTaRS3.1			AW993667	CALD1	chr7	134653150	+	TM9SF4	chr20	30754836	+
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN915906	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
5UTR-intron	ENST00000399763	ENST00000409469		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-intron	ENST00000399763	ENST00000602748		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-5UTR	ENST00000399763	ENST00000325222		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-intron	ENST00000399766	ENST00000409469		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-intron	ENST00000399766	ENST00000602748		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-5UTR	ENST00000399766	ENST00000325222		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-intron	ENST00000374343	ENST00000409469		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-intron	ENST00000374343	ENST00000602748		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
5UTR-5UTR	ENST00000374343	ENST00000325222		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
intron-intron	ENST00000470035	ENST00000409469		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
intron-intron	ENST00000470035	ENST00000602748		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
intron-5UTR	ENST00000470035	ENST00000325222		ChiTaRS3.1			DA799057	TMEM57	chr1	25757438	+	CUL1	chr7	148396047	+
3UTR-intron	ENST00000278407	ENST00000373218		ChiTaRS3.1			W03794	SERPING1	chr11	57382278	+	EIF4EBP2	chr10	72164079	+
3UTR-intron	ENST00000340687	ENST00000373218		ChiTaRS3.1			W03794	SERPING1	chr11	57382278	+	EIF4EBP2	chr10	72164079	+
intron-intron	ENST00000378323	ENST00000373218		ChiTaRS3.1			W03794	SERPING1	chr11	57382278	+	EIF4EBP2	chr10	72164079	+
3UTR-intron	ENST00000378324	ENST00000373218		ChiTaRS3.1			W03794	SERPING1	chr11	57382278	+	EIF4EBP2	chr10	72164079	+
3UTR-intron	ENST00000403558	ENST00000373218		ChiTaRS3.1			W03794	SERPING1	chr11	57382278	+	EIF4EBP2	chr10	72164079	+
intron-intron	ENST00000531605	ENST00000373218		ChiTaRS3.1			W03794	SERPING1	chr11	57382278	+	EIF4EBP2	chr10	72164079	+
5CDS-intron	ENST00000389857	ENST00000355797		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000375036		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000449428		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000592148		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000585519		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000588114		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000589082		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000331194	ENST00000355797		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000375036		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000449428		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000592148		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000585519		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000588114		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000589082		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000389856	ENST00000355797		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000375036		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000449428		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000592148		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000585519		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000588114		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000589082		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000553403	ENST00000355797		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000375036		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000449428		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000592148		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000585519		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000588114		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000589082		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000554165	ENST00000355797		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000375036		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000449428		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000592148		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000585519		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000588114		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000589082		ChiTaRS3.1			BG191222	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-5UTR	ENST00000341832	ENST00000355857		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000341832	ENST00000535617		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000341832	ENST00000535757		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000341832	ENST00000409094		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000341832	ENST00000311521		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000341832	ENST00000460901		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000341832	ENST00000542275		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000341832	ENST00000393103		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000340677	ENST00000355857		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000340677	ENST00000535617		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000340677	ENST00000535757		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000340677	ENST00000409094		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000340677	ENST00000311521		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000340677	ENST00000460901		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000340677	ENST00000542275		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000340677	ENST00000393103		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000407249	ENST00000355857		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000407249	ENST00000535617		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000407249	ENST00000535757		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000407249	ENST00000409094		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000407249	ENST00000311521		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000407249	ENST00000460901		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000407249	ENST00000542275		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000407249	ENST00000393103		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000317673	ENST00000355857		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000317673	ENST00000535617		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000317673	ENST00000535757		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-5UTR	ENST00000317673	ENST00000409094		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000317673	ENST00000311521		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000317673	ENST00000460901		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000317673	ENST00000542275		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
intron-intron	ENST00000317673	ENST00000393103		ChiTaRS3.1			BM741735	CDK11B	chr1	1593593	-	DBI	chr2	120124578	+
5CDS-intron	ENST00000578681	ENST00000368124		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-3UTR	ENST00000578681	ENST00000368125		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000578681	ENST00000497636		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000583590	ENST00000368124		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-3UTR	ENST00000583590	ENST00000368125		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000583590	ENST00000497636		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000359353	ENST00000368124		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-3UTR	ENST00000359353	ENST00000368125		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000359353	ENST00000497636		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000389924	ENST00000368124		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-3UTR	ENST00000389924	ENST00000368125		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000389924	ENST00000497636		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000457800	ENST00000368124		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-3UTR	ENST00000457800	ENST00000368125		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5CDS-intron	ENST00000457800	ENST00000497636		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
intron-intron	ENST00000582985	ENST00000368124		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
intron-3UTR	ENST00000582985	ENST00000368125		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
intron-intron	ENST00000582985	ENST00000497636		ChiTaRS3.1			AK125169	DDX42	chr17	61895212	+	CADM3	chr1	159172901	+
5UTR-intron	ENST00000229812	ENST00000442092		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
5UTR-intron	ENST00000229812	ENST00000266022		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
5UTR-intron	ENST00000229812	ENST00000443081		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
5UTR-intron	ENST00000229812	ENST00000539992		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
5UTR-intron	ENST00000229812	ENST00000441115		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
5UTR-intron	ENST00000229812	ENST00000422955		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
5UTR-intron	ENST00000229812	ENST00000421682		ChiTaRS3.1			DA437266	STK38	chr6	36514967	-	RBM6	chr3	50137414	+
intron-intron	ENST00000313486	ENST00000313486		ChiTaRS3.1			BU740086	PITPNA	chr17	1423790	+	PITPNA	chrX	139866008	-
intron-intron	ENST00000313486	ENST00000539476		ChiTaRS3.1			BU740086	PITPNA	chr17	1423790	+	PITPNA	chrX	139866008	-
intron-intron	ENST00000539476	ENST00000313486		ChiTaRS3.1			BU740086	PITPNA	chr17	1423790	+	PITPNA	chrX	139866008	-
intron-intron	ENST00000539476	ENST00000539476		ChiTaRS3.1			BU740086	PITPNA	chr17	1423790	+	PITPNA	chrX	139866008	-
5UTR-3CDS	ENST00000229395	ENST00000357248		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000229395	ENST00000349721		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000229395	ENST00000382203		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000229395	ENST00000382194		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000491574		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000324954		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000302401		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000382186		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000382185		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000357248		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000349721		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000382203		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000382194		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000491574		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000324954		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000302401		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000382186		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000382185		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000357248		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000349721		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000382203		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000382194		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000491574		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000324954		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000302401		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000382186		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000382185		ChiTaRS3.1			BM921978	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
In-frame	ENST00000332050	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000525560		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000344954		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000527786		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000534087		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000281428		ChiTaRS3.1			EU487217	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
intron-3CDS	ENST00000560305	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000560305	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000560305	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000560305	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000560305	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000560305	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000560305	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000561011	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000561011	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000561011	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000561011	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000561011	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000561011	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000561011	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000559911	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000559911	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000559911	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000559911	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000559911	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000559911	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000559911	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000558113	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000558113	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558113	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000558113	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558113	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558113	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000558113	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000358005	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000358005	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000358005	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000358005	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000358005	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000358005	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000358005	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000416810	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000416810	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000416810	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000416810	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000416810	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000416810	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000416810	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000558750	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000558750	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558750	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000558750	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558750	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558750	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000558750	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000558871	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000558871	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558871	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000558871	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558871	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000558871	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000558871	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000560109	ENST00000318561		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3CDS	ENST00000560109	ENST00000521315		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000560109	ENST00000437090		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000560109	ENST00000520605		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000560109	ENST00000522109		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-3UTR	ENST00000560109	ENST00000524255		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000560109	ENST00000522880		ChiTaRS3.1			BG529836	C15orf57	chr15	40824319	-	SFTPC	chr8	22021513	+
intron-intron	ENST00000453363	ENST00000493559		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-3UTR	ENST00000453363	ENST00000608872		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-intron	ENST00000453363	ENST00000340778		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-intron	ENST00000316193	ENST00000493559		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-3UTR	ENST00000316193	ENST00000608872		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-intron	ENST00000316193	ENST00000340778		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-intron	ENST00000329882	ENST00000493559		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-3UTR	ENST00000329882	ENST00000608872		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
intron-intron	ENST00000329882	ENST00000340778		ChiTaRS3.1			BG623872	CSH1	chr17	61972467	-	FBXW2	chr9	123522264	-
In-frame	ENST00000528080	ENST00000291386		ChiTaRS3.1			AL711176	TMEM41B	chr11	9316806	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000528080	ENST00000359060		ChiTaRS3.1			AL711176	TMEM41B	chr11	9316806	-	SSU72	chr1	1480382	-
In-frame	ENST00000527813	ENST00000291386		ChiTaRS3.1			AL711176	TMEM41B	chr11	9316806	-	SSU72	chr1	1480382	-
5CDS-intron	ENST00000527813	ENST00000359060		ChiTaRS3.1			AL711176	TMEM41B	chr11	9316806	-	SSU72	chr1	1480382	-
intron-3CDS	ENST00000533723	ENST00000291386		ChiTaRS3.1			AL711176	TMEM41B	chr11	9316806	-	SSU72	chr1	1480382	-
intron-intron	ENST00000533723	ENST00000359060		ChiTaRS3.1			AL711176	TMEM41B	chr11	9316806	-	SSU72	chr1	1480382	-
intron-3CDS	ENST00000380512	ENST00000394709		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
intron-3CDS	ENST00000380512	ENST00000247207		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
intron-intron	ENST00000380512	ENST00000554883		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
In-frame	ENST00000293831	ENST00000394709		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
In-frame	ENST00000293831	ENST00000247207		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
5CDS-intron	ENST00000293831	ENST00000554883		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
3UTR-3CDS	ENST00000577269	ENST00000394709		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
3UTR-3CDS	ENST00000577269	ENST00000247207		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
3UTR-intron	ENST00000577269	ENST00000554883		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
3UTR-3CDS	ENST00000582746	ENST00000394709		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
3UTR-3CDS	ENST00000582746	ENST00000247207		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
3UTR-intron	ENST00000582746	ENST00000554883		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
intron-3CDS	ENST00000581808	ENST00000394709		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
intron-3CDS	ENST00000581808	ENST00000247207		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
intron-intron	ENST00000581808	ENST00000554883		ChiTaRS3.1			AI371755	EIF4A1	chr17	7481702	-	HSPA2	chr14	65009222	-
intron-5UTR	ENST00000415930	ENST00000428099		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
intron-intron	ENST00000415930	ENST00000369966		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
intron-intron	ENST00000415930	ENST00000189444		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
intron-intron	ENST00000415930	ENST00000336486		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-5UTR	ENST00000356487	ENST00000428099		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-intron	ENST00000356487	ENST00000369966		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-intron	ENST00000356487	ENST00000189444		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-intron	ENST00000356487	ENST00000336486		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-5UTR	ENST00000586425	ENST00000428099		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-intron	ENST00000586425	ENST00000369966		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-intron	ENST00000586425	ENST00000189444		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
5UTR-intron	ENST00000586425	ENST00000336486		ChiTaRS3.1			DB005136	GPI	chr19	34856155	+	NFKB2	chr10	104154272	+
intron-3UTR	ENST00000430580	ENST00000405303		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000430580	ENST00000399920		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000430580	ENST00000304584		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000430580	ENST00000508888		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-3UTR	ENST00000420031	ENST00000405303		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000420031	ENST00000399920		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000420031	ENST00000304584		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000420031	ENST00000508888		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-3UTR	ENST00000432949	ENST00000405303		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000432949	ENST00000399920		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000432949	ENST00000304584		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000432949	ENST00000508888		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-3UTR	ENST00000287968	ENST00000405303		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000287968	ENST00000399920		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000287968	ENST00000304584		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000287968	ENST00000508888		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-3UTR	ENST00000599908	ENST00000405303		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000599908	ENST00000399920		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000599908	ENST00000304584		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
intron-intron	ENST00000599908	ENST00000508888		ChiTaRS3.1			BF885212	NBPF1	chr1	16931995	-	TAPT1	chr4	16163189	-
5CDS-intron	ENST00000367042	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367042	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367042	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367042	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000354848	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000354848	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000354848	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000354848	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000441839	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000441839	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000441839	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000441839	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322875	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322875	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322875	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322875	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367041	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367041	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367041	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000367041	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000358170	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000358170	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000358170	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000358170	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322918	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322918	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322918	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000322918	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000361067	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000361067	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000361067	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000361067	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
intron-intron	ENST00000367047	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
intron-intron	ENST00000367047	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
intron-intron	ENST00000367047	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
intron-intron	ENST00000367047	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000357714	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000357714	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000357714	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000357714	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
3UTR-intron	ENST00000469535	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
3UTR-intron	ENST00000469535	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
3UTR-intron	ENST00000469535	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
3UTR-intron	ENST00000469535	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000360212	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000360212	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000360212	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000360212	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000480003	ENST00000592613		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000480003	ENST00000591366		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000480003	ENST00000592160		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
5CDS-intron	ENST00000480003	ENST00000343769		ChiTaRS3.1			DA732859	CD46	chr1	207930512	+	ZNF93	chr19	20044292	+
intron-3UTR	ENST00000225792	ENST00000257013		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-intron	ENST00000225792	ENST00000464369		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-3UTR	ENST00000450599	ENST00000257013		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-intron	ENST00000450599	ENST00000464369		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-3UTR	ENST00000578804	ENST00000257013		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-intron	ENST00000578804	ENST00000464369		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-3UTR	ENST00000580026	ENST00000257013		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
intron-intron	ENST00000580026	ENST00000464369		ChiTaRS3.1			W75994	DDX5	chr17	62498574	-	FAM127A	chrX	134167118	+
5CDS-intron	ENST00000598441	ENST00000416947		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-intron	ENST00000598441	ENST00000493503		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-3UTR	ENST00000598441	ENST00000270139		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-intron	ENST00000598441	ENST00000442357		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-intron	ENST00000221448	ENST00000416947		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-intron	ENST00000221448	ENST00000493503		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-3UTR	ENST00000221448	ENST00000270139		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
5CDS-intron	ENST00000221448	ENST00000442357		ChiTaRS3.1			DA571100	SNRNP70	chr19	49589742	+	IFNAR1	chr21	34730210	+
intron-3UTR	ENST00000464845	ENST00000263398		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000526025		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000449691		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000360158		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000415148		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000437706		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000433354		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000464845	ENST00000428726		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000526669		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000464845	ENST00000433892		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000278386		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000434472		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000352818		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000464845	ENST00000528922		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000370015	ENST00000263398		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000526025		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000449691		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000360158		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000415148		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000437706		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000433354		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000370015	ENST00000428726		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000526669		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000370015	ENST00000433892		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000278386		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000434472		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000352818		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370015	ENST00000528922		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000393712	ENST00000263398		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000526025		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000449691		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000360158		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000415148		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000437706		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000433354		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000393712	ENST00000428726		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000526669		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000393712	ENST00000433892		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000278386		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000434472		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000352818		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393712	ENST00000528922		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000370009	ENST00000263398		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000526025		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000449691		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000360158		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000415148		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000437706		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000433354		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000370009	ENST00000428726		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000526669		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000370009	ENST00000433892		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000278386		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000434472		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000352818		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000370009	ENST00000528922		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000393710	ENST00000263398		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000526025		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000449691		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000360158		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000415148		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000437706		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000433354		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000393710	ENST00000428726		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000526669		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-3UTR	ENST00000393710	ENST00000433892		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000278386		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000434472		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000352818		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
intron-intron	ENST00000393710	ENST00000528922		ChiTaRS3.1			BP270776	NAA10	chrX	153197866	-	CD44	chr11	35251215	+
5CDS-intron	ENST00000341744	ENST00000367942		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000341744	ENST00000476437		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000395816	ENST00000367942		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000395816	ENST00000476437		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000347215	ENST00000367942		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000347215	ENST00000476437		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000265626	ENST00000367942		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
5CDS-intron	ENST00000265626	ENST00000476437		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
intron-intron	ENST00000395814	ENST00000367942		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
intron-intron	ENST00000395814	ENST00000476437		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
intron-intron	ENST00000472841	ENST00000367942		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
intron-intron	ENST00000472841	ENST00000476437		ChiTaRS3.1			BQ420673	PMEPA1	chr20	56223452	-	ATF6	chr1	161818746	-
intron-3CDS	ENST00000442101	ENST00000299300		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-intron	ENST00000442101	ENST00000544368		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-intron	ENST00000442101	ENST00000543146		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-3CDS	ENST00000498824	ENST00000299300		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-intron	ENST00000498824	ENST00000544368		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-intron	ENST00000498824	ENST00000543146		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-3CDS	ENST00000239882	ENST00000299300		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-intron	ENST00000239882	ENST00000544368		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
intron-intron	ENST00000239882	ENST00000543146		ChiTaRS3.1			BG180662	ELF1	chr13	41517138	-	CCT2	chr12	69993649	+
3UTR-3CDS	ENST00000532456	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
3UTR-3CDS	ENST00000532456	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
3UTR-3CDS	ENST00000532456	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
3UTR-intron	ENST00000532456	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
3UTR-intron	ENST00000532456	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
intron-3CDS	ENST00000539648	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
intron-3CDS	ENST00000539648	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
intron-3CDS	ENST00000539648	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
intron-intron	ENST00000539648	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
intron-intron	ENST00000539648	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000528499	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000528499	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000528499	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000528499	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000528499	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000263574	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000263574	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000263574	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000263574	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000263574	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000345598	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000345598	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000345598	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000345598	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000345598	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000338167	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000338167	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000338167	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000338167	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000338167	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000278756	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000278756	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000278756	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000278756	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000278756	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000543137	ENST00000526148		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000543137	ENST00000525681		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
Frame-shit	ENST00000543137	ENST00000339995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000543137	ENST00000396525		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
5CDS-intron	ENST00000543137	ENST00000525995		ChiTaRS3.1			DC337896	APLP2	chr11	129980491	+	EIF4G2	chr11	10823271	-
intron-5UTR	ENST00000435469	ENST00000373795		ChiTaRS3.1			BX345476	LINC00674	chr17	66097958	+	SRSF4	chr1	29508354	-
intron-5UTR	ENST00000435469	ENST00000546138		ChiTaRS3.1			BX345476	LINC00674	chr17	66097958	+	SRSF4	chr1	29508354	-
intron-5UTR	ENST00000435469	ENST00000466448		ChiTaRS3.1			BX345476	LINC00674	chr17	66097958	+	SRSF4	chr1	29508354	-
Frame-shit	ENST00000419617	ENST00000445937		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
Frame-shit	ENST00000419617	ENST00000531443		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
Frame-shit	ENST00000419617	ENST00000517566		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-5UTR	ENST00000419617	ENST00000452423		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-5UTR	ENST00000419617	ENST00000442977		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000419617	ENST00000521963		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000419617	ENST00000312046		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000419617	ENST00000449762		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000419617	ENST00000297447		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000419617	ENST00000521592		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000419617	ENST00000497705		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-3CDS	ENST00000523601	ENST00000445937		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-3CDS	ENST00000523601	ENST00000531443		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-3CDS	ENST00000523601	ENST00000517566		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-5UTR	ENST00000523601	ENST00000452423		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-5UTR	ENST00000523601	ENST00000442977		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000523601	ENST00000521963		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000523601	ENST00000312046		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000523601	ENST00000449762		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000523601	ENST00000297447		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000523601	ENST00000521592		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000523601	ENST00000497705		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-3CDS	ENST00000521768	ENST00000445937		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-3CDS	ENST00000521768	ENST00000531443		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-3CDS	ENST00000521768	ENST00000517566		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-5UTR	ENST00000521768	ENST00000452423		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-5UTR	ENST00000521768	ENST00000442977		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000521768	ENST00000521963		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000521768	ENST00000312046		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000521768	ENST00000449762		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000521768	ENST00000297447		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000521768	ENST00000521592		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
intron-intron	ENST00000521768	ENST00000497705		ChiTaRS3.1			DA392482	STK3	chr8	99837743	-	OXR1	chr8	107691436	+
5CDS-intron	ENST00000312917	ENST00000361445		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000312917	ENST00000376838		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000312917	ENST00000495435		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000388715	ENST00000361445		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000388715	ENST00000376838		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000388715	ENST00000495435		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000394571	ENST00000361445		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000394571	ENST00000376838		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5CDS-intron	ENST00000394571	ENST00000495435		ChiTaRS3.1			BG194684	PNPLA1	chr6	36275482	+	MTOR	chr1	11209072	+
5UTR-3CDS	ENST00000264360	ENST00000262051		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-3CDS	ENST00000264360	ENST00000547198		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-3CDS	ENST00000264360	ENST00000262052		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-3CDS	ENST00000264360	ENST00000394904		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-3CDS	ENST00000264360	ENST00000547688		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-3CDS	ENST00000264360	ENST00000541174		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-3CDS	ENST00000264360	ENST00000545993		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-5UTR	ENST00000264360	ENST00000546743		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
5UTR-5UTR	ENST00000264360	ENST00000549193		ChiTaRS3.1			DA241148	PCDH10	chr4	134071251	+	SLC11A2	chr12	51399179	-
3UTR-3UTR	ENST00000309366	ENST00000345136		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000357649		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000354589		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000398774		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000322810		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000354958		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000356346		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000309366	ENST00000436759		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-intron	ENST00000309366	ENST00000527096		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000345136		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000357649		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000354589		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000398774		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000322810		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000354958		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000356346		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000449942	ENST00000436759		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-intron	ENST00000449942	ENST00000527096		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000345136		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000357649		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000354589		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000398774		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000322810		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000354958		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000356346		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-3UTR	ENST00000394540	ENST00000436759		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
3UTR-intron	ENST00000394540	ENST00000527096		ChiTaRS3.1			CA748487	FKBP2	chr11	64011541	-	PLEC	chr8	144990215	+
intron-intron	ENST00000328649	ENST00000423431		ChiTaRS3.1			BI335113	CIB1	chr15	90773536	-	SPCS1	chr3	52740153	+
intron-intron	ENST00000328649	ENST00000233025		ChiTaRS3.1			BI335113	CIB1	chr15	90773536	-	SPCS1	chr3	52740153	+
intron-5UTR	ENST00000328649	ENST00000602728		ChiTaRS3.1			BI335113	CIB1	chr15	90773536	-	SPCS1	chr3	52740153	+
intron-intron	ENST00000518164	ENST00000400921		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000518164	ENST00000400920		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000518164	ENST00000479263		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000521291	ENST00000400921		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000521291	ENST00000400920		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000521291	ENST00000479263		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000396070	ENST00000400921		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000396070	ENST00000400920		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000396070	ENST00000479263		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000287038	ENST00000400921		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000287038	ENST00000400920		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000287038	ENST00000479263		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000523172	ENST00000400921		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000523172	ENST00000400920		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000523172	ENST00000479263		ChiTaRS3.1			BU526643	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5UTR-3CDS	ENST00000436693	ENST00000400556		ChiTaRS3.1			DA670438	TLR6	chr4	38858382	-	PPP4R1	chr18	9570491	-
5UTR-3CDS	ENST00000436693	ENST00000400555		ChiTaRS3.1			DA670438	TLR6	chr4	38858382	-	PPP4R1	chr18	9570491	-
5UTR-intron	ENST00000436693	ENST00000580583		ChiTaRS3.1			DA670438	TLR6	chr4	38858382	-	PPP4R1	chr18	9570491	-
intron-3CDS	ENST00000381950	ENST00000400556		ChiTaRS3.1			DA670438	TLR6	chr4	38858382	-	PPP4R1	chr18	9570491	-
intron-3CDS	ENST00000381950	ENST00000400555		ChiTaRS3.1			DA670438	TLR6	chr4	38858382	-	PPP4R1	chr18	9570491	-
intron-intron	ENST00000381950	ENST00000580583		ChiTaRS3.1			DA670438	TLR6	chr4	38858382	-	PPP4R1	chr18	9570491	-
5UTR-3UTR	ENST00000322313	ENST00000313949		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000322313	ENST00000371098		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000322313	ENST00000371075		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000322313	ENST00000371100		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000371099		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000371102		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000322313	ENST00000464624		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000306120		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000371095		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000371085		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000354359		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000265620		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000306090		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000322313	ENST00000371081		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000393006	ENST00000313949		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000393006	ENST00000371098		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000393006	ENST00000371075		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000393006	ENST00000371100		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000371099		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000371102		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000393006	ENST00000464624		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000306120		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000371095		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000371085		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000354359		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000265620		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000306090		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000393006	ENST00000371081		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000409658	ENST00000313949		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000409658	ENST00000371098		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000409658	ENST00000371075		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000409658	ENST00000371100		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000371099		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000371102		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-3UTR	ENST00000409658	ENST00000464624		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000306120		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000371095		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000371085		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000354359		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000265620		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000306090		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5UTR-intron	ENST00000409658	ENST00000371081		ChiTaRS3.1			BM802817	WDR33	chr2	128568583	-	GNAS	chr20	57470666	+
5CDS-intron	ENST00000379261	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000379261	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000379261	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000379261	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000416382	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000416382	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000416382	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000416382	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000450189	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000450189	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000450189	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000450189	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000542579	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000542579	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000542579	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000542579	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000399850	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000399850	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000399850	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000399850	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000417956	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000417956	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000417956	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000417956	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000354440	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000354440	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000354440	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000354440	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000427450	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000427450	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000427450	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000427450	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000315874	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000315874	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000315874	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000315874	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000608830	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000608830	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000608830	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000608830	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000609692	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000609692	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000609692	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000609692	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-intron	ENST00000354897	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000354897	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000354897	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5CDS-5UTR	ENST00000354897	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5UTR-intron	ENST00000537122	ENST00000508855		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5UTR-5UTR	ENST00000537122	ENST00000256897		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5UTR-5UTR	ENST00000537122	ENST00000504878		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
5UTR-5UTR	ENST00000537122	ENST00000513499		ChiTaRS3.1			BP873063	CELF2	chr10	11207645	+	CCNH	chr5	86708641	-
intron-intron	ENST00000392975	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000392975	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000360793	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000360793	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000584031	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000584031	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000392976	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000392976	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000582297	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000582297	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000581573	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000581573	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000448884	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000448884	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000582034	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000582034	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000542042	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000542042	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000581163	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000581163	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000582997	ENST00000355072		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-intron	ENST00000582997	ENST00000513806		ChiTaRS3.1			BM678345	CYB561	chr17	61509881	+	HTT	chr4	3136267	-
intron-5UTR	ENST00000342160	ENST00000282050		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000593152		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000590665		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000398752		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000591267		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000282050		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000593152		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000590665		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000398752		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000591267		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000282050		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000593152		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000590665		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000398752		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000591267		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000282050		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000593152		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000590665		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000398752		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000591267		ChiTaRS3.1			BC014208	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
Frame-shit	ENST00000254928	ENST00000186436		ChiTaRS3.1			BQ340945	ERAL1	chr17	27185727	+	TMEM131	chr2	98373830	-
5CDS-intron	ENST00000254928	ENST00000425805		ChiTaRS3.1			BQ340945	ERAL1	chr17	27185727	+	TMEM131	chr2	98373830	-
intron-3CDS	ENST00000578001	ENST00000186436		ChiTaRS3.1			BQ340945	ERAL1	chr17	27185727	+	TMEM131	chr2	98373830	-
intron-intron	ENST00000578001	ENST00000425805		ChiTaRS3.1			BQ340945	ERAL1	chr17	27185727	+	TMEM131	chr2	98373830	-
intron-intron	ENST00000323851	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000354944	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000521414	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000537882	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000414097	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000518176	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000522476	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
intron-intron	ENST00000518066	ENST00000384994		ChiTaRS3.1			AW296255	NDRG1	chr8	134251224	+	NEAT1	chr11	65190665	-
In-frame	ENST00000477853	ENST00000450485		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000477853	ENST00000333479		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000477853	ENST00000545065		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000477853	ENST00000537348		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-5UTR	ENST00000477853	ENST00000436959		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000477853	ENST00000534995		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000480380	ENST00000450485		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000480380	ENST00000333479		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000480380	ENST00000545065		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000480380	ENST00000537348		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-5UTR	ENST00000480380	ENST00000436959		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000480380	ENST00000534995		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375199	ENST00000450485		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375199	ENST00000333479		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375199	ENST00000545065		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375199	ENST00000537348		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-5UTR	ENST00000375199	ENST00000436959		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375199	ENST00000534995		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375208	ENST00000450485		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375208	ENST00000333479		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375208	ENST00000545065		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375208	ENST00000537348		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-5UTR	ENST00000375208	ENST00000436959		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375208	ENST00000534995		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000356068	ENST00000450485		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000356068	ENST00000333479		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000356068	ENST00000545065		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000356068	ENST00000537348		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-5UTR	ENST00000356068	ENST00000436959		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000356068	ENST00000534995		ChiTaRS3.1			AW960543	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000231061	ENST00000421182		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000357867		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000323926		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000336916		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000354785		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000357009		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000346544		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000345488		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000359671		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000446046		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000443816		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000432072		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000231061	ENST00000356005		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-intron	ENST00000231061	ENST00000490833		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-intron	ENST00000231061	ENST00000426059		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000421182		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000357867		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000323926		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000336916		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000354785		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000357009		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000346544		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000345488		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000359671		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000446046		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000443816		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000432072		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-3CDS	ENST00000537849	ENST00000356005		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-intron	ENST00000537849	ENST00000490833		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
intron-intron	ENST00000537849	ENST00000426059		ChiTaRS3.1			BQ182246	SPARC	chr5	151042386	+	FN1	chr2	216238092	+
5CDS-3UTR	ENST00000326427	ENST00000401084		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326427	ENST00000264203		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326427	ENST00000375142		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000326427	ENST00000433834		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000326427	ENST00000264202		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000326427	ENST00000482808		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326427	ENST00000375144		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000335005	ENST00000401084		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000335005	ENST00000264203		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000335005	ENST00000375142		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000335005	ENST00000433834		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000335005	ENST00000264202		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000335005	ENST00000482808		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000335005	ENST00000375144		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326407	ENST00000401084		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326407	ENST00000264203		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326407	ENST00000375142		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000326407	ENST00000433834		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000326407	ENST00000264202		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-intron	ENST00000326407	ENST00000482808		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
5CDS-3UTR	ENST00000326407	ENST00000375144		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000409704	ENST00000401084		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000409704	ENST00000264203		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000409704	ENST00000375142		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-intron	ENST00000409704	ENST00000433834		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-intron	ENST00000409704	ENST00000264202		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-intron	ENST00000409704	ENST00000482808		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000409704	ENST00000375144		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000492029	ENST00000401084		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000492029	ENST00000264203		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000492029	ENST00000375142		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-intron	ENST00000492029	ENST00000433834		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-intron	ENST00000492029	ENST00000264202		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-intron	ENST00000492029	ENST00000482808		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3UTR	ENST00000492029	ENST00000375144		ChiTaRS3.1			CA337229	ITM2C	chr2	231729763	+	CAPZB	chr1	19665710	-
intron-3CDS	ENST00000264896	ENST00000223095		ChiTaRS3.1			BQ650179	SCARB2	chr4	77091105	-	SERPINE1	chr7	100777064	+
intron-3CDS	ENST00000264896	ENST00000445463		ChiTaRS3.1			BQ650179	SCARB2	chr4	77091105	-	SERPINE1	chr7	100777064	+
intron-3CDS	ENST00000452464	ENST00000223095		ChiTaRS3.1			BQ650179	SCARB2	chr4	77091105	-	SERPINE1	chr7	100777064	+
intron-3CDS	ENST00000452464	ENST00000445463		ChiTaRS3.1			BQ650179	SCARB2	chr4	77091105	-	SERPINE1	chr7	100777064	+
3UTR-intron	ENST00000344824	ENST00000430069		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000344824	ENST00000457928		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000538887	ENST00000430069		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000538887	ENST00000457928		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000300933	ENST00000430069		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000300933	ENST00000457928		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000591645	ENST00000430069		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
3UTR-intron	ENST00000591645	ENST00000457928		ChiTaRS3.1			BF083294	TPM4	chr19	16212249	+	TBL1XR1	chr3	176807811	-
intron-3CDS	ENST00000301764	ENST00000378892		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000301764	ENST00000277010		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000301764	ENST00000477726		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-5UTR	ENST00000301764	ENST00000461426		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000450997	ENST00000378892		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000450997	ENST00000277010		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000450997	ENST00000477726		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-5UTR	ENST00000450997	ENST00000461426		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000451943	ENST00000378892		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000451943	ENST00000277010		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000451943	ENST00000477726		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-5UTR	ENST00000451943	ENST00000461426		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000538470	ENST00000378892		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000538470	ENST00000277010		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000538470	ENST00000477726		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-5UTR	ENST00000538470	ENST00000461426		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000545930	ENST00000378892		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000545930	ENST00000277010		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-3CDS	ENST00000545930	ENST00000477726		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
intron-5UTR	ENST00000545930	ENST00000461426		ChiTaRS3.1			AI291611	DDB1	chr11	61067001	+	SIGMAR1	chr9	34635690	+
5CDS-intron	ENST00000395474	ENST00000382679		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000395474	ENST00000382692		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
intron-intron	ENST00000489684	ENST00000382679		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
intron-intron	ENST00000489684	ENST00000382692		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000608424	ENST00000382679		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000608424	ENST00000382692		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000415265	ENST00000382679		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000415265	ENST00000382692		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000448293	ENST00000382679		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
5CDS-intron	ENST00000448293	ENST00000382692		ChiTaRS3.1			BI025358	WDR6	chr3	49051149	+	DEFA1	chr8	6855241	-
intron-3CDS	ENST00000400198	ENST00000454682		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000400198	ENST00000550952		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000400198	ENST00000356769		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000400198	ENST00000552540		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000400198	ENST00000393891		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000400198	ENST00000548563		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000400198	ENST00000546392		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-intron	ENST00000400198	ENST00000551793		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000454682		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000550952		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000356769		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000552540		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000393891		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000548563		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000472226	ENST00000546392		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-intron	ENST00000472226	ENST00000551793		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000454682		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000550952		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000356769		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000552540		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000393891		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000548563		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000375926	ENST00000546392		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-intron	ENST00000375926	ENST00000551793		ChiTaRS3.1			BE935101	ARGLU1	chr13	107209454	-	NACA	chr12	57106674	-
intron-3CDS	ENST00000509990	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000509990	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000361059	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000361059	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000504203	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000504203	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000502929	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000502929	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000394800	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000394800	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000507197	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000507197	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000394805	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000394805	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000502499	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000502499	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000510056	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000510056	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000503811	ENST00000304858		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000503811	ENST00000504328		ChiTaRS3.1			AK300770	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000521654	ENST00000261413		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000457646		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000513900		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000515404		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000521654	ENST00000522562		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000521654	ENST00000522095		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000261413		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000457646		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000513900		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000515404		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000560949	ENST00000522562		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000560949	ENST00000522095		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000261413		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000457646		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000513900		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000515404		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000454842	ENST00000522562		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000454842	ENST00000522095		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000261413		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000457646		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000513900		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000515404		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000368414	ENST00000522562		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000368414	ENST00000522095		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000261413		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000457646		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000513900		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
Frame-shit	ENST00000359704	ENST00000515404		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
In-frame	ENST00000359704	ENST00000522562		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
5CDS-intron	ENST00000359704	ENST00000522095		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000261413		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000457646		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000513900		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000515404		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000275184	ENST00000522562		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-intron	ENST00000275184	ENST00000522095		ChiTaRS3.1			AK310474	RNF217	chr6	125330430	+	MRPS27	chr5	71533957	-
intron-3CDS	ENST00000296449	ENST00000406164		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000296449	ENST00000406824		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000296449	ENST00000339837		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000296449	ENST00000413939		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000296449	ENST00000296202		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000296449	ENST00000511444		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000296449	ENST00000512391		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-intron	ENST00000296449	ENST00000514703		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-5UTR	ENST00000296449	ENST00000507242		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000406164		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000406824		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000339837		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000413939		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000296202		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000511444		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000438782	ENST00000512391		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-intron	ENST00000438782	ENST00000514703		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-5UTR	ENST00000438782	ENST00000507242		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000406164		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000406824		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000339837		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000413939		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000296202		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000511444		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000452691	ENST00000512391		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-intron	ENST00000452691	ENST00000514703		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-5UTR	ENST00000452691	ENST00000507242		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000406164		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000406824		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000339837		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000413939		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000296202		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000511444		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-3CDS	ENST00000366429	ENST00000512391		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-intron	ENST00000366429	ENST00000514703		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
5UTR-5UTR	ENST00000366429	ENST00000507242		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000406164		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000406824		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000339837		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000413939		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000296202		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000511444		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000451634	ENST00000512391		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-intron	ENST00000451634	ENST00000514703		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-5UTR	ENST00000451634	ENST00000507242		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000406164		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000406824		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000339837		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000413939		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000296202		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000511444		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000493870	ENST00000512391		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-intron	ENST00000493870	ENST00000514703		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-5UTR	ENST00000493870	ENST00000507242		ChiTaRS3.1			BF576138	CCDC36	chr3	49237006	+	NMNAT3	chr3	139280236	-
intron-3CDS	ENST00000537045	ENST00000356082		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000537045	ENST00000391911		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000537045	ENST00000367030		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000263196	ENST00000356082		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000263196	ENST00000391911		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000263196	ENST00000367030		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000545799	ENST00000356082		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000545799	ENST00000391911		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000545799	ENST00000367030		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000473832	ENST00000356082		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000473832	ENST00000391911		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000473832	ENST00000367030		ChiTaRS3.1			BI063077	DGCR2	chr22	19024409	-	LAMB3	chr1	209789850	-
intron-3CDS	ENST00000369626	ENST00000265403		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000369626	ENST00000458688		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-intron	ENST00000369626	ENST00000549514		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000538576	ENST00000265403		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000538576	ENST00000458688		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-intron	ENST00000538576	ENST00000549514		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000433570	ENST00000265403		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000433570	ENST00000458688		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-intron	ENST00000433570	ENST00000549514		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000478835	ENST00000265403		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3CDS	ENST00000478835	ENST00000458688		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-intron	ENST00000478835	ENST00000549514		ChiTaRS3.1			BP239062	SLC16A1	chr1	113456386	-	UGT2B10	chr4	69681713	+
intron-3UTR	ENST00000373203	ENST00000361545		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-3UTR	ENST00000373203	ENST00000223398		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-intron	ENST00000373203	ENST00000395060		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-3UTR	ENST00000344849	ENST00000361545		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-3UTR	ENST00000344849	ENST00000223398		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-intron	ENST00000344849	ENST00000395060		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-3UTR	ENST00000480266	ENST00000361545		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-3UTR	ENST00000480266	ENST00000223398		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
intron-intron	ENST00000480266	ENST00000395060		ChiTaRS3.1			BU625451	ENG	chr9	130577556	+	CLIP2	chr7	73819461	-
5CDS-3UTR	ENST00000229239	ENST00000368309		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-intron	ENST00000229239	ENST00000472638		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-3UTR	ENST00000396856	ENST00000368309		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-intron	ENST00000396856	ENST00000472638		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-3UTR	ENST00000396861	ENST00000368309		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-intron	ENST00000396861	ENST00000472638		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-3UTR	ENST00000396859	ENST00000368309		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-intron	ENST00000396859	ENST00000472638		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-3UTR	ENST00000396858	ENST00000368309		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
5CDS-intron	ENST00000396858	ENST00000472638		ChiTaRS3.1			CD387579	GAPDH	chr12	6646484	+	UBQLN4	chr1	156005149	-
intron-3UTR	ENST00000472413	ENST00000397293		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000472413	ENST00000424878		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000472413	ENST00000349314		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000472413	ENST00000361710		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000472413	ENST00000397287		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-intron	ENST00000472413	ENST00000487423		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000328085	ENST00000397293		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000328085	ENST00000424878		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000328085	ENST00000349314		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000328085	ENST00000361710		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-3UTR	ENST00000328085	ENST00000397287		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
intron-intron	ENST00000328085	ENST00000487423		ChiTaRS3.1			AI355669	NPIPA1	chr16	16444251	-	APOL3	chr22	36536806	+
3UTR-intron	ENST00000272233	ENST00000358763		ChiTaRS3.1			AI087078	RHOB	chr2	20649036	-	SYN3	chr22	33256195	-
3UTR-intron	ENST00000272233	ENST00000332840		ChiTaRS3.1			AI087078	RHOB	chr2	20649036	-	SYN3	chr22	33256195	-
3UTR-intron	ENST00000272233	ENST00000467095		ChiTaRS3.1			AI087078	RHOB	chr2	20649036	-	SYN3	chr22	33256195	-
intron-3CDS	ENST00000282272	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000282272	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000337207	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000337207	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000450567	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000450567	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000328737	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000328737	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000409153	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000409153	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000539527	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000539527	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000409919	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000409919	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000477852	ENST00000186436		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-intron	ENST00000477852	ENST00000425805		ChiTaRS3.1			DB239307	ANKRD44	chr2	198070307	-	TMEM131	chr2	98430796	-
intron-3CDS	ENST00000361566	ENST00000562057		ChiTaRS3.1			AI659242	KRT19	chr17	39680057	+	SPINT1	chr15	41145922	-
intron-3CDS	ENST00000361566	ENST00000344051		ChiTaRS3.1			AI659242	KRT19	chr17	39680057	+	SPINT1	chr15	41145922	-
intron-3CDS	ENST00000361566	ENST00000431806		ChiTaRS3.1			AI659242	KRT19	chr17	39680057	+	SPINT1	chr15	41145922	-
5CDS-intron	ENST00000276585	ENST00000520381		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000276585	ENST00000262215		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000276585	ENST00000517955		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000276585	ENST00000518230		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521434	ENST00000520381		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521434	ENST00000262215		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521434	ENST00000517955		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5CDS-intron	ENST00000521434	ENST00000518230		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000521605	ENST00000520381		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000521605	ENST00000262215		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000521605	ENST00000517955		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
intron-intron	ENST00000521605	ENST00000518230		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000522987	ENST00000520381		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000522987	ENST00000262215		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000522987	ENST00000517955		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
5UTR-intron	ENST00000522987	ENST00000518230		ChiTaRS3.1			BP350832	MRPS28	chr8	80915234	-	ARFGEF1	chr8	68214701	-
intron-3CDS	ENST00000304239	ENST00000321153		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000304239	ENST00000532004		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000304239	ENST00000530797		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-3CDS	ENST00000337995	ENST00000321153		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000337995	ENST00000532004		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000337995	ENST00000530797		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-3CDS	ENST00000586540	ENST00000321153		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000586540	ENST00000532004		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000586540	ENST00000530797		ChiTaRS3.1			AX747721	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000360319	ENST00000291503		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000360319	ENST00000357324		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000360319	ENST00000496082		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000422373	ENST00000291503		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000422373	ENST00000357324		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000422373	ENST00000496082		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000369850	ENST00000291503		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000369850	ENST00000357324		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000369850	ENST00000496082		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000369856	ENST00000291503		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000369856	ENST00000357324		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000369856	ENST00000496082		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000344736	ENST00000291503		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000344736	ENST00000357324		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000344736	ENST00000496082		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000498491	ENST00000291503		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000498491	ENST00000357324		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000498491	ENST00000496082		ChiTaRS3.1			DB281169	FLNA	chrX	153577208	-	ATP13A1	chr19	19774212	-
intron-intron	ENST00000389467	ENST00000558351		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000389467	ENST00000334660		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000389467	ENST00000560397		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000446231	ENST00000558351		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000446231	ENST00000334660		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000446231	ENST00000560397		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000565224	ENST00000558351		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000565224	ENST00000334660		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000565224	ENST00000560397		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000567737	ENST00000558351		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3UTR	ENST00000567737	ENST00000334660		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-intron	ENST00000567737	ENST00000560397		ChiTaRS3.1			BE616436	SMG1	chr16	18819376	-	CHP1	chr15	41573322	+
intron-3CDS	ENST00000414209	ENST00000372134		ChiTaRS3.1			DA230760	JPX	chrX	73190632	-	GHITM	chr10	85901291	+
5CDS-intron	ENST00000348795	ENST00000470110		ChiTaRS3.1			M79265	SNCG	chr10	88718576	+	ZNF785	chr16	30592239	-
5CDS-3UTR	ENST00000348795	ENST00000395216		ChiTaRS3.1			M79265	SNCG	chr10	88718576	+	ZNF785	chr16	30592239	-
5CDS-intron	ENST00000372017	ENST00000470110		ChiTaRS3.1			M79265	SNCG	chr10	88718576	+	ZNF785	chr16	30592239	-
5CDS-3UTR	ENST00000372017	ENST00000395216		ChiTaRS3.1			M79265	SNCG	chr10	88718576	+	ZNF785	chr16	30592239	-
intron-intron	ENST00000483064	ENST00000470110		ChiTaRS3.1			M79265	SNCG	chr10	88718576	+	ZNF785	chr16	30592239	-
intron-3UTR	ENST00000483064	ENST00000395216		ChiTaRS3.1			M79265	SNCG	chr10	88718576	+	ZNF785	chr16	30592239	-
intron-intron	ENST00000449264	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000449264	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000449264	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000449264	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000445232	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000445232	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000445232	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000445232	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000376122	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000376122	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000376122	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000376122	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000420425	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000420425	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000420425	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000420425	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000448781	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000448781	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000448781	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000448781	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000383496	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000383496	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000383496	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000383496	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000412275	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-3UTR	ENST00000412275	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000412275	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
intron-intron	ENST00000412275	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
3UTR-intron	ENST00000443707	ENST00000446326		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
3UTR-3UTR	ENST00000443707	ENST00000289816		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
3UTR-intron	ENST00000443707	ENST00000568064		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
3UTR-intron	ENST00000443707	ENST00000443381		ChiTaRS3.1			AA207063	TNF	chr6	2876776	-	ZNF276	chr16	89805072	+
5CDS-3UTR	ENST00000504734	ENST00000279550		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000504734	ENST00000228251		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-intron	ENST00000504734	ENST00000546164		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000415618	ENST00000279550		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000415618	ENST00000228251		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-intron	ENST00000415618	ENST00000546164		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000452673	ENST00000279550		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000452673	ENST00000228251		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-intron	ENST00000452673	ENST00000546164		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000247461	ENST00000279550		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000247461	ENST00000228251		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-intron	ENST00000247461	ENST00000546164		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000512607	ENST00000279550		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-3UTR	ENST00000512607	ENST00000228251		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
5CDS-intron	ENST00000512607	ENST00000546164		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
intron-3UTR	ENST00000503126	ENST00000279550		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
intron-3UTR	ENST00000503126	ENST00000228251		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
intron-intron	ENST00000503126	ENST00000546164		ChiTaRS3.1			BG168464	CANX	chr5	179147512	+	YBX3	chr12	10851923	-
intron-3CDS	ENST00000364938	ENST00000502346		ChiTaRS3.1			BF669799	SNHG3	chr1	28834672	+	TMEM167A	chr5	82357731	-
intron-5UTR	ENST00000364938	ENST00000511450		ChiTaRS3.1			BF669799	SNHG3	chr1	28834672	+	TMEM167A	chr5	82357731	-
intron-intron	ENST00000382038	ENST00000517298		ChiTaRS3.1			BQ772417	RAD1	chr5	34906140	+	CA13	chr8	86195173	-
intron-3UTR	ENST00000382038	ENST00000321764		ChiTaRS3.1			BQ772417	RAD1	chr5	34906140	+	CA13	chr8	86195173	-
intron-intron	ENST00000341754	ENST00000517298		ChiTaRS3.1			BQ772417	RAD1	chr5	34906140	+	CA13	chr8	86195173	-
intron-3UTR	ENST00000341754	ENST00000321764		ChiTaRS3.1			BQ772417	RAD1	chr5	34906140	+	CA13	chr8	86195173	-
5CDS-3UTR	ENST00000382771	ENST00000215832		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-intron	ENST00000382771	ENST00000398822		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-intron	ENST00000382771	ENST00000544786		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-intron	ENST00000382771	ENST00000491588		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-3UTR	ENST00000489441	ENST00000215832		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-intron	ENST00000489441	ENST00000398822		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-intron	ENST00000489441	ENST00000544786		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
5CDS-intron	ENST00000489441	ENST00000491588		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
intron-3UTR	ENST00000464346	ENST00000215832		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
intron-intron	ENST00000464346	ENST00000398822		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
intron-intron	ENST00000464346	ENST00000544786		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
intron-intron	ENST00000464346	ENST00000491588		ChiTaRS3.1			DA766661	SERPINB5	chr18	61151805	+	MAPK1	chr22	22116665	-
intron-intron	ENST00000430166	ENST00000392859		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000430166	ENST00000359415		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000430166	ENST00000534182		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000430166	ENST00000264028		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000424349	ENST00000392859		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000424349	ENST00000359415		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000424349	ENST00000534182		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000424349	ENST00000264028		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000417835	ENST00000392859		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000417835	ENST00000359415		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000417835	ENST00000534182		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000417835	ENST00000264028		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000426200	ENST00000392859		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000426200	ENST00000359415		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000426200	ENST00000534182		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000426200	ENST00000264028		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000440079	ENST00000392859		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000440079	ENST00000359415		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000440079	ENST00000534182		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-3UTR	ENST00000440079	ENST00000264028		ChiTaRS3.1			BF691886	FGD5-AS1	chr3	14986856	-	ARCN1	chr11	118472062	+
intron-intron	ENST00000440491	ENST00000393446		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000265437		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000393451		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000393449		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000323984		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000432298		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000422922		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000487459		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000393443		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000393447		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000393444		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000440491	ENST00000465133		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000393446		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000265437		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000393451		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000393449		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000323984		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000432298		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000422922		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000487459		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000393443		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000393447		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000393444		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000338347	ENST00000465133		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000393446		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000265437		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000393451		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000393449		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000323984		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000432298		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000422922		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000487459		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000393443		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000393447		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000393444		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000468645	ENST00000465133		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000393446		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000265437		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000393451		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000393449		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000323984		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000432298		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000422922		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000487459		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000393443		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000393447		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000393444		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
intron-intron	ENST00000281815	ENST00000465133		ChiTaRS3.1			BU602007	NBPF9	chr1	144300530	-	ST7	chr7	116841632	-
5UTR-3CDS	ENST00000357681	ENST00000382743		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000357681	ENST00000525319		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000357681	ENST00000524564		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000357681	ENST00000532956		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000357681	ENST00000529382		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000357681	ENST00000528702		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-3CDS	ENST00000391954	ENST00000382743		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000391954	ENST00000525319		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000391954	ENST00000524564		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000391954	ENST00000532956		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000391954	ENST00000529382		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000391954	ENST00000528702		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-3CDS	ENST00000367218	ENST00000382743		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000367218	ENST00000525319		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000367218	ENST00000524564		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000367218	ENST00000532956		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000367218	ENST00000529382		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000367218	ENST00000528702		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-3CDS	ENST00000367219	ENST00000382743		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000367219	ENST00000525319		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000367219	ENST00000524564		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-intron	ENST00000367219	ENST00000532956		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000367219	ENST00000529382		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
5UTR-5UTR	ENST00000367219	ENST00000528702		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-3CDS	ENST00000341360	ENST00000382743		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-intron	ENST00000341360	ENST00000525319		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-intron	ENST00000341360	ENST00000524564		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-intron	ENST00000341360	ENST00000532956		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-5UTR	ENST00000341360	ENST00000529382		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-5UTR	ENST00000341360	ENST00000528702		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-3CDS	ENST00000466407	ENST00000382743		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-intron	ENST00000466407	ENST00000525319		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-intron	ENST00000466407	ENST00000524564		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-intron	ENST00000466407	ENST00000532956		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-5UTR	ENST00000466407	ENST00000529382		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
intron-5UTR	ENST00000466407	ENST00000528702		ChiTaRS3.1			DB136999	ATP2B4	chr1	203596347	+	SIRT3	chr11	233536	-
3UTR-3UTR	ENST00000336452	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000336452	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000336452	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000336458	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000336458	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000336458	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000576930	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000576930	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000576930	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
intron-3UTR	ENST00000572815	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
intron-3UTR	ENST00000572815	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
intron-intron	ENST00000572815	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000573542	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000573542	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000573542	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000419711	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000419711	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000419711	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000571955	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000571955	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000571955	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000416016	ENST00000528838		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-3UTR	ENST00000416016	ENST00000400780		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
3UTR-intron	ENST00000416016	ENST00000528842		ChiTaRS3.1			AW954202	EIF5A	chr17	7215401	+	HSF1	chr8	145538241	+
intron-intron	ENST00000375541	ENST00000327495		ChiTaRS3.1			AK075079	CROCC	chr1	17067176	+	PSG3	chr19	43383832	-
intron-intron	ENST00000375541	ENST00000595140		ChiTaRS3.1			AK075079	CROCC	chr1	17067176	+	PSG3	chr19	43383832	-
intron-intron	ENST00000375541	ENST00000490592		ChiTaRS3.1			AK075079	CROCC	chr1	17067176	+	PSG3	chr19	43383832	-
intron-intron	ENST00000467938	ENST00000327495		ChiTaRS3.1			AK075079	CROCC	chr1	17067176	+	PSG3	chr19	43383832	-
intron-intron	ENST00000467938	ENST00000595140		ChiTaRS3.1			AK075079	CROCC	chr1	17067176	+	PSG3	chr19	43383832	-
intron-intron	ENST00000467938	ENST00000490592		ChiTaRS3.1			AK075079	CROCC	chr1	17067176	+	PSG3	chr19	43383832	-
intron-3CDS	ENST00000377194	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000377194	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000377199	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000377199	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000498117	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000498117	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000459807	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000459807	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000412687	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000412687	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000437160	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000437160	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000427689	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000427689	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000435528	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000435528	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000485666	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000485666	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000468364	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000468364	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000455861	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000455861	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000417660	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000417660	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000400720	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000400720	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000495323	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000495323	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000491158	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000491158	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000437415	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000437415	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000468047	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000468047	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
In-frame	ENST00000431123	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
In-frame	ENST00000431123	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
In-frame	ENST00000452265	ENST00000355710		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
In-frame	ENST00000452265	ENST00000340058		ChiTaRS3.1			M16029	TRIM27	chr6	215935	-	RET	chr10	43608999	+
intron-3CDS	ENST00000393791	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000393791	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000393791	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000356411	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000356411	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000356411	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000424809	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000424809	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000424809	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000393797	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000393797	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000393797	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000550288	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000550288	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000550288	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000430041	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000430041	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000430041	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000550454	ENST00000262027		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000550454	ENST00000315473		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000550454	ENST00000447721		ChiTaRS3.1			AW409902	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
In-frame	ENST00000264158	ENST00000397901		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
Frame-shit	ENST00000264158	ENST00000253475		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
In-frame	ENST00000264158	ENST00000535997		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
In-frame	ENST00000264158	ENST00000550102		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5CDS-5UTR	ENST00000264158	ENST00000547614		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5UTR-3CDS	ENST00000539493	ENST00000397901		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5UTR-3CDS	ENST00000539493	ENST00000253475		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5UTR-3CDS	ENST00000539493	ENST00000535997		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5UTR-3CDS	ENST00000539493	ENST00000550102		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5UTR-5UTR	ENST00000539493	ENST00000547614		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
In-frame	ENST00000442034	ENST00000397901		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
Frame-shit	ENST00000442034	ENST00000253475		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
In-frame	ENST00000442034	ENST00000535997		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
In-frame	ENST00000442034	ENST00000550102		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5CDS-5UTR	ENST00000442034	ENST00000547614		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
intron-3CDS	ENST00000487003	ENST00000397901		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
intron-3CDS	ENST00000487003	ENST00000253475		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
intron-3CDS	ENST00000487003	ENST00000535997		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
intron-3CDS	ENST00000487003	ENST00000550102		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
intron-5UTR	ENST00000487003	ENST00000547614		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
Frame-shit	ENST00000425393	ENST00000397901		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
Frame-shit	ENST00000425393	ENST00000253475		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
Frame-shit	ENST00000425393	ENST00000535997		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
Frame-shit	ENST00000425393	ENST00000550102		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
5CDS-5UTR	ENST00000425393	ENST00000547614		ChiTaRS3.1			CF593854	RAB3GAP1	chr2	135815658	+	CHMP1A	chr16	89713741	-
intron-3UTR	ENST00000338316	ENST00000282388		ChiTaRS3.1			BM995008	ADCY2	chr1	152005157	+	ZFP36L2	chr2	43450007	+
intron-3UTR	ENST00000537121	ENST00000282388		ChiTaRS3.1			BM995008	ADCY2	chr1	152005157	+	ZFP36L2	chr2	43450007	+
intron-3UTR	ENST00000513693	ENST00000282388		ChiTaRS3.1			BM995008	ADCY2	chr1	152005157	+	ZFP36L2	chr2	43450007	+
3UTR-intron	ENST00000452148	ENST00000558351		ChiTaRS3.1			BC062538	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-3UTR	ENST00000452148	ENST00000334660		ChiTaRS3.1			BC062538	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-intron	ENST00000452148	ENST00000560397		ChiTaRS3.1			BC062538	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
intron-intron	ENST00000396231	ENST00000532226		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000525151		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000438298		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000442928		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000532353		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000420651		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000449449		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000456352		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000440001		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000440395		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000606892		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000396231	ENST00000607066		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000532226		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000525151		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000438298		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000442928		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000532353		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000420651		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000449449		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000456352		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000440001		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000440395		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000606892		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000262726	ENST00000607066		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000532226		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000525151		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000438298		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000442928		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000532353		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000420651		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000449449		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000456352		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000440001		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000440395		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000606892		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000358439	ENST00000607066		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000532226		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000525151		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000438298		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000442928		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000532353		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000420651		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000449449		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000456352		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000440001		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000440395		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000606892		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000356087	ENST00000607066		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000532226		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000525151		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000438298		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000442928		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000532353		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000420651		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000449449		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000456352		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000440001		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000440395		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000606892		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-intron	ENST00000461800	ENST00000607066		ChiTaRS3.1			BQ677008	EFCAB6	chr22	44041744	+	TRAF3IP2-AS1	chr6	111927078	-
intron-3CDS	ENST00000357429	ENST00000322764		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000357429	ENST00000449423		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000357429	ENST00000392910		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3UTR	ENST00000357429	ENST00000477373		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000397100	ENST00000322764		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000397100	ENST00000449423		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000397100	ENST00000392910		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3UTR	ENST00000397100	ENST00000477373		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000397098	ENST00000322764		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000397098	ENST00000449423		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000397098	ENST00000392910		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3UTR	ENST00000397098	ENST00000477373		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000488073	ENST00000322764		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000488073	ENST00000449423		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3CDS	ENST00000488073	ENST00000392910		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
intron-3UTR	ENST00000488073	ENST00000477373		ChiTaRS3.1			AI651868	C7orf50	chr7	1036865	+	ZYX	chr7	143079962	-
Frame-shit	ENST00000361367	ENST00000371120		ChiTaRS3.1			BC020951	CTR9	chr11	10795709	+	ATG4C	chr1	63307120	+
Frame-shit	ENST00000361367	ENST00000317868		ChiTaRS3.1			BC020951	CTR9	chr11	10795709	+	ATG4C	chr1	63307120	+
3UTR-intron	ENST00000369799	ENST00000504032		ChiTaRS3.1			CA407754	AHCYL1	chr1	110565530	+	UGDH-AS1	chr4	39548974	-
intron-intron	ENST00000475081	ENST00000504032		ChiTaRS3.1			CA407754	AHCYL1	chr1	110565530	+	UGDH-AS1	chr4	39548974	-
intron-intron	ENST00000359172	ENST00000504032		ChiTaRS3.1			CA407754	AHCYL1	chr1	110565530	+	UGDH-AS1	chr4	39548974	-
intron-intron	ENST00000393614	ENST00000504032		ChiTaRS3.1			CA407754	AHCYL1	chr1	110565530	+	UGDH-AS1	chr4	39548974	-
intron-3CDS	ENST00000346693	ENST00000176763		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-intron	ENST00000346693	ENST00000517775		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-3CDS	ENST00000370377	ENST00000176763		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-intron	ENST00000370377	ENST00000517775		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-3CDS	ENST00000355149	ENST00000176763		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-intron	ENST00000355149	ENST00000517775		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-3CDS	ENST00000437787	ENST00000176763		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-intron	ENST00000437787	ENST00000517775		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-3CDS	ENST00000466436	ENST00000176763		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-intron	ENST00000466436	ENST00000517775		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-3CDS	ENST00000320893	ENST00000176763		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-intron	ENST00000320893	ENST00000517775		ChiTaRS3.1			BQ051882	CD99L2	chrX	149936332	-	STK10	chr5	171481699	-
intron-5UTR	ENST00000046640	ENST00000301821		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000046640	ENST00000443003		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-intron	ENST00000046640	ENST00000478027		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000381870	ENST00000301821		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000381870	ENST00000443003		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-intron	ENST00000381870	ENST00000478027		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000441220	ENST00000301821		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000441220	ENST00000443003		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-intron	ENST00000441220	ENST00000478027		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000414524	ENST00000301821		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000414524	ENST00000443003		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-intron	ENST00000414524	ENST00000478027		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000488623	ENST00000301821		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000488623	ENST00000443003		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-intron	ENST00000488623	ENST00000478027		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000399306	ENST00000301821		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-5UTR	ENST00000399306	ENST00000443003		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
intron-intron	ENST00000399306	ENST00000478027		ChiTaRS3.1			BU526731	CTNS	chr17	3566814	+	RPSA	chr3	39448225	+
5CDS-5UTR	ENST00000379656	ENST00000517956		ChiTaRS3.1			AI083499	ARRDC2	chr19	18120621	+	FBXO32	chr8	124553354	-
5CDS-5UTR	ENST00000379656	ENST00000443022		ChiTaRS3.1			AI083499	ARRDC2	chr19	18120621	+	FBXO32	chr8	124553354	-
5CDS-5UTR	ENST00000222250	ENST00000517956		ChiTaRS3.1			AI083499	ARRDC2	chr19	18120621	+	FBXO32	chr8	124553354	-
5CDS-5UTR	ENST00000222250	ENST00000443022		ChiTaRS3.1			AI083499	ARRDC2	chr19	18120621	+	FBXO32	chr8	124553354	-
3UTR-5UTR	ENST00000608009	ENST00000517956		ChiTaRS3.1			AI083499	ARRDC2	chr19	18120621	+	FBXO32	chr8	124553354	-
3UTR-5UTR	ENST00000608009	ENST00000443022		ChiTaRS3.1			AI083499	ARRDC2	chr19	18120621	+	FBXO32	chr8	124553354	-
3UTR-3UTR	ENST00000331825	ENST00000585421		ChiTaRS3.1			BU537701	FTL	chr19	49470094	+	TIMP2	chr17	76851743	-
3UTR-3UTR	ENST00000331825	ENST00000536189		ChiTaRS3.1			BU537701	FTL	chr19	49470094	+	TIMP2	chr17	76851743	-
3UTR-3UTR	ENST00000331825	ENST00000262768		ChiTaRS3.1			BU537701	FTL	chr19	49470094	+	TIMP2	chr17	76851743	-
3UTR-3UTR	ENST00000331825	ENST00000586057		ChiTaRS3.1			BU537701	FTL	chr19	49470094	+	TIMP2	chr17	76851743	-
intron-3UTR	ENST00000330978	ENST00000257261		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-3UTR	ENST00000330978	ENST00000522056		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-3UTR	ENST00000330978	ENST00000278840		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-intron	ENST00000330978	ENST00000521849		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-intron	ENST00000330978	ENST00000574708		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-intron	ENST00000330978	ENST00000522639		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-intron	ENST00000330978	ENST00000517839		ChiTaRS3.1			BU623713	BOLA2	chr16	30004581	+	FADS2	chr11	61633216	-
intron-3CDS	ENST00000380191	ENST00000215565		ChiTaRS3.1			BQ438913	GDI2	chr10	5855225	-	NDUFB7	chr19	14682738	-
intron-3CDS	ENST00000479928	ENST00000215565		ChiTaRS3.1			BQ438913	GDI2	chr10	5855225	-	NDUFB7	chr19	14682738	-
intron-3CDS	ENST00000380132	ENST00000215565		ChiTaRS3.1			BQ438913	GDI2	chr10	5855225	-	NDUFB7	chr19	14682738	-
intron-3CDS	ENST00000380181	ENST00000215565		ChiTaRS3.1			BQ438913	GDI2	chr10	5855225	-	NDUFB7	chr19	14682738	-
3UTR-3UTR	ENST00000553645	ENST00000553645		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000311089		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554339		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554871		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000540526		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000311089	ENST00000553645		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000311089		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554339		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554871		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000540526		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554339	ENST00000553645		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000311089		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554339		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554871		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000540526		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554871	ENST00000553645		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000311089		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554339		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554871		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000540526		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000540526	ENST00000553645		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000311089		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554339		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554871		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000540526		ChiTaRS3.1			AA916835	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3CDS	ENST00000472413	ENST00000263277		ChiTaRS3.1			BI055814	NPIPA1	chr16	18433726	-	EHD2	chr19	48220037	+
intron-intron	ENST00000472413	ENST00000538399		ChiTaRS3.1			BI055814	NPIPA1	chr16	18433726	-	EHD2	chr19	48220037	+
intron-intron	ENST00000472413	ENST00000540884		ChiTaRS3.1			BI055814	NPIPA1	chr16	18433726	-	EHD2	chr19	48220037	+
intron-3CDS	ENST00000328085	ENST00000263277		ChiTaRS3.1			BI055814	NPIPA1	chr16	18433726	-	EHD2	chr19	48220037	+
intron-intron	ENST00000328085	ENST00000538399		ChiTaRS3.1			BI055814	NPIPA1	chr16	18433726	-	EHD2	chr19	48220037	+
intron-intron	ENST00000328085	ENST00000540884		ChiTaRS3.1			BI055814	NPIPA1	chr16	18433726	-	EHD2	chr19	48220037	+
intron-3CDS	ENST00000330387	ENST00000448526		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000330387	ENST00000244741		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000330387	ENST00000405375		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000330387	ENST00000373711		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3UTR	ENST00000330387	ENST00000478800		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000456390	ENST00000448526		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000456390	ENST00000244741		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000456390	ENST00000405375		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000456390	ENST00000373711		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3UTR	ENST00000456390	ENST00000478800		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000452463	ENST00000448526		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000452463	ENST00000244741		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000452463	ENST00000405375		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000452463	ENST00000373711		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3UTR	ENST00000452463	ENST00000478800		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000458726	ENST00000448526		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000458726	ENST00000244741		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000458726	ENST00000405375		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000458726	ENST00000373711		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3UTR	ENST00000458726	ENST00000478800		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000468127	ENST00000448526		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000468127	ENST00000244741		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000468127	ENST00000405375		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3CDS	ENST00000468127	ENST00000373711		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
intron-3UTR	ENST00000468127	ENST00000478800		ChiTaRS3.1			BC037414	CREB3L2	chr7	137565216	-	CDKN1A	chr6	36652129	+
In-frame	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3CDS	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3CDS	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3CDS	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3UTR	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3UTR	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF177239	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ207769	ETV6	chr12	12032695	+	RUNX1	chr21	36283062	-
5CDS-5UTR	ENST00000248553	ENST00000253023		ChiTaRS3.1			CD387519	HSPB1	chr7	75932194	+	UBE2M	chr19	59069801	-
intron-5UTR	ENST00000429938	ENST00000253023		ChiTaRS3.1			CD387519	HSPB1	chr7	75932194	+	UBE2M	chr19	59069801	-
5CDS-intron	ENST00000366783	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366783	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366783	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366783	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366783	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366783	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366783	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000340188	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000422240	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000366782	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000391872	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
5CDS-intron	ENST00000472139	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000378460		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000530326		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000528071		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000528501		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000531016		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000532747		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-intron	ENST00000471728	ENST00000526870		ChiTaRS3.1			AI652488	PSEN2	chr1	227076634	-	NUP160	chr11	47856706	+
intron-3CDS	ENST00000358580	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000354402	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000356738	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000357560	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000508496	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000412920	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000511201	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000507279	ENST00000334940		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000374417		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000340258		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000472561		ChiTaRS3.1			AW206671	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
3UTR-3CDS	ENST00000292599	ENST00000285093		ChiTaRS3.1			BQ328229	MAML1	chr5	179202513	+	ACAA2	chr18	47311692	-
3UTR-3CDS	ENST00000292599	ENST00000589432		ChiTaRS3.1			BQ328229	MAML1	chr5	179202513	+	ACAA2	chr18	47311692	-
3UTR-3CDS	ENST00000292599	ENST00000587994		ChiTaRS3.1			BQ328229	MAML1	chr5	179202513	+	ACAA2	chr18	47311692	-
intron-3CDS	ENST00000503050	ENST00000285093		ChiTaRS3.1			BQ328229	MAML1	chr5	179202513	+	ACAA2	chr18	47311692	-
intron-3CDS	ENST00000503050	ENST00000589432		ChiTaRS3.1			BQ328229	MAML1	chr5	179202513	+	ACAA2	chr18	47311692	-
intron-3CDS	ENST00000503050	ENST00000587994		ChiTaRS3.1			BQ328229	MAML1	chr5	179202513	+	ACAA2	chr18	47311692	-
5CDS-5UTR	ENST00000297268	ENST00000316981		ChiTaRS3.1			AF221550	COL1A2	chr7	94024413	+	PLAG1	chr8	57083748	-
5CDS-5UTR	ENST00000297268	ENST00000423799		ChiTaRS3.1			AF221550	COL1A2	chr7	94024413	+	PLAG1	chr8	57083748	-
5CDS-5UTR	ENST00000297268	ENST00000429357		ChiTaRS3.1			AF221550	COL1A2	chr7	94024413	+	PLAG1	chr8	57083748	-
5CDS-intron	ENST00000297268	ENST00000519027		ChiTaRS3.1			AF221550	COL1A2	chr7	94024413	+	PLAG1	chr8	57083748	-
intron-3CDS	ENST00000514529	ENST00000377844		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
intron-intron	ENST00000514529	ENST00000545028		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
Frame-shit	ENST00000321871	ENST00000377844		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
5CDS-intron	ENST00000321871	ENST00000545028		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
Frame-shit	ENST00000393130	ENST00000377844		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
5CDS-intron	ENST00000393130	ENST00000545028		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
Frame-shit	ENST00000508711	ENST00000377844		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
5CDS-intron	ENST00000508711	ENST00000545028		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
Frame-shit	ENST00000515826	ENST00000377844		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
5CDS-intron	ENST00000515826	ENST00000545028		ChiTaRS3.1			DA502462	TMEM108	chr3	132948196	+	KLHL1	chr13	70549934	-
Frame-shit	ENST00000256495	ENST00000391857		ChiTaRS3.1			BG255829	BHLHE40	chr3	5025014	+	RPL13A	chr19	49993758	+
5CDS-3UTR	ENST00000256495	ENST00000477613		ChiTaRS3.1			BG255829	BHLHE40	chr3	5025014	+	RPL13A	chr19	49993758	+
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15918	COL1A1	chr17	48268743	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15918	COL1A1	chr17	48268743	-	PDGFB	chr22	39631879	-
5UTR-3CDS	ENST00000380345	ENST00000398970		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-3CDS	ENST00000380345	ENST00000300574		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-3CDS	ENST00000380345	ENST00000574295		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-5UTR	ENST00000380345	ENST00000572145		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
intron-3CDS	ENST00000515007	ENST00000398970		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
intron-3CDS	ENST00000515007	ENST00000300574		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
intron-3CDS	ENST00000515007	ENST00000574295		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
intron-5UTR	ENST00000515007	ENST00000572145		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-3CDS	ENST00000515349	ENST00000398970		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-3CDS	ENST00000515349	ENST00000300574		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-3CDS	ENST00000515349	ENST00000574295		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
5UTR-5UTR	ENST00000515349	ENST00000572145		ChiTaRS3.1			BJ991043	LHFPL2	chr5	77928086	-	CRK	chr17	1340453	-
3UTR-3CDS	ENST00000303375	ENST00000389120		ChiTaRS3.1			BU632292	MRC2	chr17	60770824	-	RNF20	chr9	104315023	-
3UTR-intron	ENST00000303375	ENST00000481046		ChiTaRS3.1			BU632292	MRC2	chr17	60770824	-	RNF20	chr9	104315023	-
3UTR-3CDS	ENST00000446119	ENST00000389120		ChiTaRS3.1			BU632292	MRC2	chr17	60770824	-	RNF20	chr9	104315023	-
3UTR-intron	ENST00000446119	ENST00000481046		ChiTaRS3.1			BU632292	MRC2	chr17	60770824	-	RNF20	chr9	104315023	-
intron-3CDS	ENST00000580916	ENST00000389120		ChiTaRS3.1			BU632292	MRC2	chr17	60770824	-	RNF20	chr9	104315023	-
intron-intron	ENST00000580916	ENST00000481046		ChiTaRS3.1			BU632292	MRC2	chr17	60770824	-	RNF20	chr9	104315023	-
3UTR-3UTR	ENST00000229239	ENST00000360472		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000229239	ENST00000368077		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000229239	ENST00000368076		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000229239	ENST00000488858		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396856	ENST00000360472		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396856	ENST00000368077		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396856	ENST00000368076		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396856	ENST00000488858		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396861	ENST00000360472		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396861	ENST00000368077		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396861	ENST00000368076		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396861	ENST00000488858		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396859	ENST00000360472		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396859	ENST00000368077		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396859	ENST00000368076		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396859	ENST00000488858		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396858	ENST00000360472		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396858	ENST00000368077		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396858	ENST00000368076		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396858	ENST00000488858		ChiTaRS3.1			BG574895	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
In-frame	ENST00000394233	ENST00000253861		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000394233	ENST00000539845		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000394233	ENST00000393161		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000394233	ENST00000545148		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-3UTR	ENST00000394233	ENST00000460346		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000394233	ENST00000541309		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000454898	ENST00000253861		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000454898	ENST00000539845		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000454898	ENST00000393161		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000454898	ENST00000545148		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-3UTR	ENST00000454898	ENST00000460346		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000454898	ENST00000541309		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5UTR-3CDS	ENST00000536817	ENST00000253861		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5UTR-3CDS	ENST00000536817	ENST00000539845		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5UTR-intron	ENST00000536817	ENST00000393161		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5UTR-intron	ENST00000536817	ENST00000545148		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5UTR-3UTR	ENST00000536817	ENST00000460346		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5UTR-intron	ENST00000536817	ENST00000541309		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000370214	ENST00000253861		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000370214	ENST00000539845		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000370214	ENST00000393161		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000370214	ENST00000545148		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-3UTR	ENST00000370214	ENST00000460346		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000370214	ENST00000541309		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000315713	ENST00000253861		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
In-frame	ENST00000315713	ENST00000539845		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000315713	ENST00000393161		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000315713	ENST00000545148		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-3UTR	ENST00000315713	ENST00000460346		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
5CDS-intron	ENST00000315713	ENST00000541309		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
intron-3CDS	ENST00000484213	ENST00000253861		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
intron-3CDS	ENST00000484213	ENST00000539845		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
intron-intron	ENST00000484213	ENST00000393161		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
intron-intron	ENST00000484213	ENST00000545148		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
intron-3UTR	ENST00000484213	ENST00000460346		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
intron-intron	ENST00000484213	ENST00000541309		ChiTaRS3.1			DA454805	ABCD3	chr1	94884144	+	EXOC4	chr7	133502077	+
3UTR-intron	ENST00000402574	ENST00000381125		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000402574	ENST00000381075		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000402574	ENST00000421751		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000402574	ENST00000381072		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000366918	ENST00000381125		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000366918	ENST00000381075		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000366918	ENST00000421751		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
3UTR-intron	ENST00000366918	ENST00000381072		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000366917	ENST00000381125		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000366917	ENST00000381075		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000366917	ENST00000421751		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000366917	ENST00000381072		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000485104	ENST00000381125		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000485104	ENST00000381075		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000485104	ENST00000421751		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-intron	ENST00000485104	ENST00000381072		ChiTaRS3.1			AA350049	MARK1	chr1	220837603	-	PFKP	chr10	3170698	-
intron-3UTR	ENST00000548241	ENST00000274787		ChiTaRS3.1			BC024309	ANKRD52	chr12	56635415	-	HIGD2A	chr5	175816714	+
intron-3UTR	ENST00000267116	ENST00000274787		ChiTaRS3.1			BC024309	ANKRD52	chr12	56635415	-	HIGD2A	chr5	175816714	+
intron-intron	ENST00000204726	ENST00000404479		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000204726	ENST00000318709		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000204726	ENST00000459629		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000204726	ENST00000409301		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000450791	ENST00000404479		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000450791	ENST00000318709		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000450791	ENST00000459629		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000450791	ENST00000409301		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000456883	ENST00000404479		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000456883	ENST00000318709		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000456883	ENST00000459629		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000456883	ENST00000409301		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000537452	ENST00000404479		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000537452	ENST00000318709		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000537452	ENST00000459629		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000537452	ENST00000409301		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000545875	ENST00000404479		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000545875	ENST00000318709		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000545875	ENST00000459629		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000545875	ENST00000409301		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000534967	ENST00000404479		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000534967	ENST00000318709		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000534967	ENST00000459629		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-intron	ENST00000534967	ENST00000409301		ChiTaRS3.1			BU958312	GOLGA3	chr12	133402554	+	AVL9	chr7	32907905	-
intron-3CDS	ENST00000561623	ENST00000351388		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000561623	ENST00000458650		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000561623	ENST00000323322		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000561623	ENST00000342364		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000356183	ENST00000351388		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000356183	ENST00000458650		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000356183	ENST00000323322		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000356183	ENST00000342364		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000567806	ENST00000351388		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000567806	ENST00000458650		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000567806	ENST00000323322		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
intron-3CDS	ENST00000567806	ENST00000342364		ChiTaRS3.1			AV748383	GTF3C1	chr16	27476607	-	GH1	chr17	61994715	-
5UTR-intron	ENST00000547303	ENST00000345739		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000264110		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000409635		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000392543		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000409499		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000392544		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000426833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000538946		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000487334		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000409833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000413123		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000547303	ENST00000409437		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000345739		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000264110		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000409635		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000392543		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000409499		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000392544		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000426833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000538946		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000487334		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000409833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000413123		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000551116	ENST00000409437		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000345739		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000264110		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000409635		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000392543		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000409499		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000392544		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000426833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000538946		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000487334		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000409833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000413123		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000346473	ENST00000409437		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000345739		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000264110		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000409635		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000392543		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000409499		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000392544		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000426833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000538946		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000487334		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000409833		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000413123		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
5UTR-intron	ENST00000552740	ENST00000409437		ChiTaRS3.1			BU662818	DDIT3	chr12	57914201	-	ATF2	chr2	175986270	-
In-frame	ENST00000319555	ENST00000497571		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
In-frame	ENST00000319555	ENST00000542957		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
5CDS-intron	ENST00000319555	ENST00000173785		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
5CDS-intron	ENST00000319555	ENST00000469435		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
3UTR-3CDS	ENST00000569086	ENST00000497571		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
3UTR-3CDS	ENST00000569086	ENST00000542957		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
3UTR-intron	ENST00000569086	ENST00000173785		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
3UTR-intron	ENST00000569086	ENST00000469435		ChiTaRS3.1			CT004488	ZFPM1	chr16	88580928	+	KLF6	chr10	3824407	-
Frame-shit	ENST00000272348	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
Frame-shit	ENST00000272348	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
Frame-shit	ENST00000272348	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
5UTR-3CDS	ENST00000429728	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
5UTR-3CDS	ENST00000429728	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
5UTR-3CDS	ENST00000429728	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000482975	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000482975	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000482975	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000438261	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000438261	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000438261	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000449935	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000449935	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000449935	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000413456	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000413456	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
intron-3CDS	ENST00000413456	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
Frame-shit	ENST00000454893	ENST00000330537		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
Frame-shit	ENST00000454893	ENST00000381474		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
Frame-shit	ENST00000454893	ENST00000543392		ChiTaRS3.1			BU186812	SNRPG	chr2	70520748	-	NOMO2	chr16	18535874	-
5CDS-intron	ENST00000348943	ENST00000449707		ChiTaRS3.1			AU133680	HNRNPM	chr19	8520423	+	ZNF142	chr2	219516982	-
5CDS-intron	ENST00000348943	ENST00000411696		ChiTaRS3.1			AU133680	HNRNPM	chr19	8520423	+	ZNF142	chr2	219516982	-
5CDS-intron	ENST00000325495	ENST00000449707		ChiTaRS3.1			AU133680	HNRNPM	chr19	8520423	+	ZNF142	chr2	219516982	-
5CDS-intron	ENST00000325495	ENST00000411696		ChiTaRS3.1			AU133680	HNRNPM	chr19	8520423	+	ZNF142	chr2	219516982	-
intron-intron	ENST00000602219	ENST00000449707		ChiTaRS3.1			AU133680	HNRNPM	chr19	8520423	+	ZNF142	chr2	219516982	-
intron-intron	ENST00000602219	ENST00000411696		ChiTaRS3.1			AU133680	HNRNPM	chr19	8520423	+	ZNF142	chr2	219516982	-
In-frame	ENST00000356239	ENST00000288602		ChiTaRS3.1			AY803272	AKAP9	chr7	91632550	+	BRAF	chr7	140487386	-
In-frame	ENST00000358100	ENST00000288602		ChiTaRS3.1			AY803272	AKAP9	chr7	91632550	+	BRAF	chr7	140487386	-
In-frame	ENST00000359028	ENST00000288602		ChiTaRS3.1			AY803272	AKAP9	chr7	91632550	+	BRAF	chr7	140487386	-
intron-3CDS	ENST00000394564	ENST00000288602		ChiTaRS3.1			AY803272	AKAP9	chr7	91632550	+	BRAF	chr7	140487386	-
intron-3CDS	ENST00000491695	ENST00000288602		ChiTaRS3.1			AY803272	AKAP9	chr7	91632550	+	BRAF	chr7	140487386	-
5CDS-3UTR	ENST00000223273	ENST00000223273		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000448268		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000432096		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000469737		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000448268	ENST00000223273		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000448268		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000432096		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000469737		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000432096	ENST00000223273		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000448268		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000432096		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000469737		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000469737	ENST00000223273		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000448268		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000432096		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000469737		ChiTaRS3.1			AW819826	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3CDS	ENST00000359611	ENST00000454189		ChiTaRS3.1			DA501345	HIST1H2AM	chr6	27860868	-	GPM6B	chrX	13956759	-
intron-intron	ENST00000359611	ENST00000398361		ChiTaRS3.1			DA501345	HIST1H2AM	chr6	27860868	-	GPM6B	chrX	13956759	-
intron-intron	ENST00000359611	ENST00000316715		ChiTaRS3.1			DA501345	HIST1H2AM	chr6	27860868	-	GPM6B	chrX	13956759	-
intron-intron	ENST00000359611	ENST00000493677		ChiTaRS3.1			DA501345	HIST1H2AM	chr6	27860868	-	GPM6B	chrX	13956759	-
intron-intron	ENST00000359611	ENST00000355135		ChiTaRS3.1			DA501345	HIST1H2AM	chr6	27860868	-	GPM6B	chrX	13956759	-
intron-intron	ENST00000359611	ENST00000356942		ChiTaRS3.1			DA501345	HIST1H2AM	chr6	27860868	-	GPM6B	chrX	13956759	-
5CDS-intron	ENST00000395309	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395309	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395309	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395309	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000413890	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000413890	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000413890	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000413890	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000438792	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000438792	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000438792	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000438792	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395314	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395314	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395314	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395314	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395308	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395308	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395308	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395308	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395311	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395311	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395311	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000395311	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000416613	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000416613	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000416613	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000416613	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000554507	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000554507	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000554507	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
5CDS-intron	ENST00000554507	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
intron-intron	ENST00000555573	ENST00000256935		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
intron-intron	ENST00000555573	ENST00000540750		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
intron-intron	ENST00000555573	ENST00000520908		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
intron-intron	ENST00000555573	ENST00000523351		ChiTaRS3.1			AU186125	KTN1	chr14	56125316	+	DOCK2	chr5	169340527	-
3UTR-3CDS	ENST00000348035	ENST00000319622		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000565184		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000389093		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000335181		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000568883		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000449901		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000565154		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000348035	ENST00000568459		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000319622		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000565184		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000389093		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000335181		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000568883		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000449901		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000565154		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
3UTR-3CDS	ENST00000356142	ENST00000568459		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000319622		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000565184		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000389093		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000335181		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000568883		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000449901		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000565154		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
In-frame	ENST00000488373	ENST00000568459		ChiTaRS3.1			CD365065	RAC1	chr7	6442108	-	PKM	chr15	72499561	+
5UTR-3CDS	ENST00000372435	ENST00000321728		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-3CDS	ENST00000372435	ENST00000303531		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-intron	ENST00000372435	ENST00000482000		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-intron	ENST00000372435	ENST00000498058		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-3CDS	ENST00000372428	ENST00000321728		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-3CDS	ENST00000372428	ENST00000303531		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000372428	ENST00000482000		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000372428	ENST00000498058		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-3CDS	ENST00000372419	ENST00000321728		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-3CDS	ENST00000372419	ENST00000303531		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-intron	ENST00000372419	ENST00000482000		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
5UTR-intron	ENST00000372419	ENST00000498058		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-3CDS	ENST00000543248	ENST00000321728		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-3CDS	ENST00000543248	ENST00000303531		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000543248	ENST00000482000		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000543248	ENST00000498058		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-3CDS	ENST00000372418	ENST00000321728		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-3CDS	ENST00000372418	ENST00000303531		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000372418	ENST00000482000		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000372418	ENST00000498058		ChiTaRS3.1			DA717960	PRPS1	chrX	106871798	+	PRKCB	chr16	23847607	+
intron-intron	ENST00000537403	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000537403	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000537403	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000537403	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000307712	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000307712	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000307712	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000307712	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000536508	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000536508	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000536508	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000536508	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000545328	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000545328	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000545328	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000545328	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553925	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553925	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553925	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553925	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000548032	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000548032	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000548032	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000548032	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000557280	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000557280	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000557280	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000557280	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553970	ENST00000229179		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553970	ENST00000378905		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553970	ENST00000539906		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
intron-intron	ENST00000553970	ENST00000401003		ChiTaRS3.1			AI445956	SEC23A	chr14	39560265	-	NUP107	chr12	69083966	-
Frame-shit	ENST00000265729	ENST00000373970		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
5CDS-intron	ENST00000265729	ENST00000467359		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
Frame-shit	ENST00000419179	ENST00000373970		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
5CDS-intron	ENST00000419179	ENST00000467359		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
Frame-shit	ENST00000490437	ENST00000373970		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
5CDS-intron	ENST00000490437	ENST00000467359		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
Frame-shit	ENST00000394641	ENST00000373970		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
5CDS-intron	ENST00000394641	ENST00000467359		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
Frame-shit	ENST00000431660	ENST00000373970		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
5CDS-intron	ENST00000431660	ENST00000467359		ChiTaRS3.1			BQ225130	SRI	chr7	87840197	-	DKK1	chr10	54076557	+
intron-3CDS	ENST00000483612	ENST00000298892		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000483612	ENST00000395805		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000483612	ENST00000251071		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000483612	ENST00000308433		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-intron	ENST00000483612	ENST00000417045		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-intron	ENST00000483612	ENST00000538387		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3CDS	ENST00000292401	ENST00000298892		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000292401	ENST00000395805		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000292401	ENST00000251071		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000292401	ENST00000308433		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-intron	ENST00000292401	ENST00000417045		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-intron	ENST00000292401	ENST00000538387		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3CDS	ENST00000411734	ENST00000298892		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000411734	ENST00000395805		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000411734	ENST00000251071		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-3UTR	ENST00000411734	ENST00000308433		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-intron	ENST00000411734	ENST00000417045		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
intron-intron	ENST00000411734	ENST00000538387		ChiTaRS3.1			AX795408	AZGP1	chr7	99573583	-	CAPRIN2	chr12	30863246	-
3UTR-5UTR	ENST00000338051	ENST00000461188		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
3UTR-3UTR	ENST00000338051	ENST00000354200		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
3UTR-5UTR	ENST00000394976	ENST00000461188		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
3UTR-3UTR	ENST00000394976	ENST00000354200		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
intron-5UTR	ENST00000504727	ENST00000461188		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
intron-3UTR	ENST00000504727	ENST00000354200		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
intron-5UTR	ENST00000435259	ENST00000461188		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
intron-3UTR	ENST00000435259	ENST00000354200		ChiTaRS3.1			AA287758	C5orf24	chr5	134191851	+	TBC1D20	chr20	417488	-
intron-3CDS	ENST00000607838	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000261182		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000393263		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000431879		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000547773		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000544816		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000542344		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000535020		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000549596		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000547993		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000552342		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000548044		ChiTaRS3.1			BF804803	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
Frame-shit	ENST00000324932	ENST00000392539		ChiTaRS3.1			AB038155	NUP98	chr11	3765738	-	HOXD13	chr2	176959206	+
Frame-shit	ENST00000359171	ENST00000392539		ChiTaRS3.1			AB038155	NUP98	chr11	3765738	-	HOXD13	chr2	176959206	+
Frame-shit	ENST00000355260	ENST00000392539		ChiTaRS3.1			AB038155	NUP98	chr11	3765738	-	HOXD13	chr2	176959206	+
Frame-shit	ENST00000397004	ENST00000392539		ChiTaRS3.1			AB038155	NUP98	chr11	3765738	-	HOXD13	chr2	176959206	+
Frame-shit	ENST00000397007	ENST00000392539		ChiTaRS3.1			AB038155	NUP98	chr11	3765738	-	HOXD13	chr2	176959206	+
intron-3CDS	ENST00000488828	ENST00000392539		ChiTaRS3.1			AB038155	NUP98	chr11	3765738	-	HOXD13	chr2	176959206	+
intron-intron	ENST00000343348	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000257414	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000510263	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000513137	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000282394	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000503865	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000503962	ENST00000586683		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000252445		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000587806		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000589171		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000591674		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000586120		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000590700		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000591912		ChiTaRS3.1			AI652447	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000540393	ENST00000282120		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000540393	ENST00000377386		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000540393	ENST00000398263		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000540393	ENST00000409232		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000540393	ENST00000409015		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000540393	ENST00000444342		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000254695	ENST00000282120		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000254695	ENST00000377386		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000254695	ENST00000398263		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000254695	ENST00000409232		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000254695	ENST00000409015		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000254695	ENST00000444342		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000366401	ENST00000282120		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000366401	ENST00000377386		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000366401	ENST00000398263		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000366401	ENST00000409232		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000366401	ENST00000409015		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
3UTR-intron	ENST00000366401	ENST00000444342		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000542807	ENST00000282120		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000542807	ENST00000377386		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000542807	ENST00000398263		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000542807	ENST00000409232		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000542807	ENST00000409015		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000542807	ENST00000444342		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000574709	ENST00000282120		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000574709	ENST00000377386		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000574709	ENST00000398263		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000574709	ENST00000409232		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000574709	ENST00000409015		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
intron-intron	ENST00000574709	ENST00000444342		ChiTaRS3.1			BF000533	RAP1GAP2	chr17	2940748	-	TGOLN2	chr2	85554486	+
5CDS-5UTR	ENST00000455789	ENST00000238855		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000455789	ENST00000422803		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000455789	ENST00000238856		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000455789	ENST00000409933		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000455789	ENST00000409183		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000455789	ENST00000487769		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000310015	ENST00000238855		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000310015	ENST00000422803		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000310015	ENST00000238856		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000310015	ENST00000409933		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000310015	ENST00000409183		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000310015	ENST00000487769		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000418194	ENST00000238855		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000418194	ENST00000422803		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000418194	ENST00000238856		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000418194	ENST00000409933		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000418194	ENST00000409183		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000418194	ENST00000487769		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-5UTR	ENST00000483084	ENST00000238855		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-5UTR	ENST00000483084	ENST00000422803		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-5UTR	ENST00000483084	ENST00000238856		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-intron	ENST00000483084	ENST00000409933		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-intron	ENST00000483084	ENST00000409183		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-intron	ENST00000483084	ENST00000487769		ChiTaRS3.1			AK093926	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			X07537	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			X07537	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000398512	ENST00000318560		ChiTaRS3.1			X07537	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			X07537	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
5CDS-5UTR	ENST00000338305	ENST00000296792		ChiTaRS3.1			BC150197	LRFN2	chr6	40399453	-	UTP15	chr5	72863084	+
5CDS-intron	ENST00000338305	ENST00000543251		ChiTaRS3.1			BC150197	LRFN2	chr6	40399453	-	UTP15	chr5	72863084	+
5CDS-5UTR	ENST00000338305	ENST00000508491		ChiTaRS3.1			BC150197	LRFN2	chr6	40399453	-	UTP15	chr5	72863084	+
3UTR-3UTR	ENST00000320785	ENST00000211998		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
3UTR-3UTR	ENST00000320785	ENST00000372755		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
3UTR-intron	ENST00000320785	ENST00000478896		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
3UTR-intron	ENST00000320785	ENST00000417648		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
intron-3UTR	ENST00000573815	ENST00000211998		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
intron-3UTR	ENST00000573815	ENST00000372755		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
intron-intron	ENST00000573815	ENST00000478896		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
intron-intron	ENST00000573815	ENST00000417648		ChiTaRS3.1			AI129035	KIF1C	chr17	4927745	-	VCL	chr10	75878408	-
5CDS-intron	ENST00000588240	ENST00000513238		ChiTaRS3.1			AV752672	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000588240	ENST00000307428		ChiTaRS3.1			AV752672	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000513238		ChiTaRS3.1			AV752672	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000307428		ChiTaRS3.1			AV752672	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000513238		ChiTaRS3.1			AV752672	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000307428		ChiTaRS3.1			AV752672	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
3UTR-intron	ENST00000542955	ENST00000481781		ChiTaRS3.1			BI051493	IGFBP4	chr17	38613149	+	INS-IGF2	chr11	2153404	-
3UTR-intron	ENST00000542955	ENST00000397270		ChiTaRS3.1			BI051493	IGFBP4	chr17	38613149	+	INS-IGF2	chr11	2153404	-
3UTR-intron	ENST00000269593	ENST00000481781		ChiTaRS3.1			BI051493	IGFBP4	chr17	38613149	+	INS-IGF2	chr11	2153404	-
3UTR-intron	ENST00000269593	ENST00000397270		ChiTaRS3.1			BI051493	IGFBP4	chr17	38613149	+	INS-IGF2	chr11	2153404	-
intron-3CDS	ENST00000506222	ENST00000262812		ChiTaRS3.1			AA625735	LINC01016	chr6	33859979	+	COPE	chr19	19014139	+
intron-intron	ENST00000506222	ENST00000349893		ChiTaRS3.1			AA625735	LINC01016	chr6	33859979	+	COPE	chr19	19014139	+
intron-intron	ENST00000506222	ENST00000600932		ChiTaRS3.1			AA625735	LINC01016	chr6	33859979	+	COPE	chr19	19014139	+
intron-5UTR	ENST00000506222	ENST00000598969		ChiTaRS3.1			AA625735	LINC01016	chr6	33859979	+	COPE	chr19	19014139	+
intron-5UTR	ENST00000506222	ENST00000351079		ChiTaRS3.1			AA625735	LINC01016	chr6	33859979	+	COPE	chr19	19014139	+
intron-3UTR	ENST00000367661	ENST00000559717		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3UTR	ENST00000367661	ENST00000360468		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000367661	ENST00000431652		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000367661	ENST00000430376		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000367661	ENST00000558538		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-3UTR	ENST00000367662	ENST00000559717		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-3UTR	ENST00000367662	ENST00000360468		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000367662	ENST00000431652		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000367662	ENST00000430376		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000367662	ENST00000558538		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3UTR	ENST00000486075	ENST00000559717		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3UTR	ENST00000486075	ENST00000360468		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000486075	ENST00000431652		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000486075	ENST00000430376		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000486075	ENST00000558538		ChiTaRS3.1			AW956972	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000534336	ENST00000389484		ChiTaRS3.1			BE179476	MALAT1	chr11	65269639	+	LRP1B	chr2	142712080	-
3UTR-intron	ENST00000534336	ENST00000486364		ChiTaRS3.1			BE179476	MALAT1	chr11	65269639	+	LRP1B	chr2	142712080	-
3UTR-3CDS	ENST00000534336	ENST00000174618		ChiTaRS3.1			CN412353	MALAT1	chr11	65266731	+	MNT	chr17	2297434	-
3UTR-intron	ENST00000534336	ENST00000575374		ChiTaRS3.1			CN412353	MALAT1	chr11	65266731	+	MNT	chr17	2297434	-
3UTR-intron	ENST00000534336	ENST00000575394		ChiTaRS3.1			CN412353	MALAT1	chr11	65266731	+	MNT	chr17	2297434	-
intron-3CDS	ENST00000377795	ENST00000368508		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-3CDS	ENST00000377795	ENST00000368507		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000353334	ENST00000368508		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000353334	ENST00000368507		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-3CDS	ENST00000524315	ENST00000368508		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-3CDS	ENST00000524315	ENST00000368507		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000009530	ENST00000368508		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000009530	ENST00000368507		ChiTaRS3.1			EU236945	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-intron	ENST00000531066	ENST00000368721		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000531066	ENST00000284690		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000531066	ENST00000284688		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000355661	ENST00000368721		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000355661	ENST00000284690		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000355661	ENST00000284688		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000448080	ENST00000368721		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000448080	ENST00000284690		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000448080	ENST00000284688		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000532079	ENST00000368721		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000532079	ENST00000284690		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000532079	ENST00000284688		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000332954	ENST00000368721		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000332954	ENST00000284690		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-intron	ENST00000332954	ENST00000284688		ChiTaRS3.1			BE621116	PLEKHA7	chr11	16996586	+	DHX32	chr10	127584610	+
intron-3CDS	ENST00000368194	ENST00000261918		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000368194	ENST00000542748		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000368194	ENST00000543145		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000487682	ENST00000261918		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000487682	ENST00000542748		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000487682	ENST00000543145		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000361409	ENST00000261918		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000361409	ENST00000542748		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000361409	ENST00000543145		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000315174	ENST00000261918		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000315174	ENST00000542748		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
intron-3CDS	ENST00000315174	ENST00000543145		ChiTaRS3.1			AI598158	ARHGEF11	chr1	156905055	+	SEMA7A	chr15	74707257	+
Frame-shit	ENST00000389413	ENST00000544935		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389413	ENST00000537384		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389413	ENST00000406797		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389413	ENST00000403562		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389413	ENST00000360274		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
5CDS-intron	ENST00000389413	ENST00000488474		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000409483	ENST00000544935		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000409483	ENST00000537384		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000409483	ENST00000406797		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000409483	ENST00000403562		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000409483	ENST00000360274		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
5CDS-intron	ENST00000409483	ENST00000488474		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-3CDS	ENST00000389416	ENST00000544935		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-3CDS	ENST00000389416	ENST00000537384		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-3CDS	ENST00000389416	ENST00000406797		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-3CDS	ENST00000389416	ENST00000403562		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-3CDS	ENST00000389416	ENST00000360274		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-intron	ENST00000389416	ENST00000488474		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389418	ENST00000544935		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389418	ENST00000537384		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389418	ENST00000406797		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389418	ENST00000403562		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000389418	ENST00000360274		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
5CDS-intron	ENST00000389418	ENST00000488474		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000404321	ENST00000544935		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000404321	ENST00000537384		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000404321	ENST00000406797		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000404321	ENST00000403562		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
Frame-shit	ENST00000404321	ENST00000360274		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
5CDS-intron	ENST00000404321	ENST00000488474		ChiTaRS3.1			AW498673	PTPRN2	chr7	158282426	-	PRKAR1B	chr7	720364	-
intron-3UTR	ENST00000539554	ENST00000368096		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-3UTR	ENST00000539554	ENST00000368097		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000539554	ENST00000478033		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000539554	ENST00000320307		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-3UTR	ENST00000381881	ENST00000368096		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-3UTR	ENST00000381881	ENST00000368097		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000381881	ENST00000478033		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000381881	ENST00000320307		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-3UTR	ENST00000320756	ENST00000368096		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-3UTR	ENST00000320756	ENST00000368097		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000320756	ENST00000478033		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000320756	ENST00000320307		ChiTaRS3.1			BU536483	MAGOHB	chr12	10758826	-	TAGLN2	chr1	159887978	-
intron-intron	ENST00000252542	ENST00000396821		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000252542	ENST00000444597		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000252542	ENST00000381633		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000252542	ENST00000432525		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000591310	ENST00000396821		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000591310	ENST00000444597		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000591310	ENST00000381633		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000591310	ENST00000432525		ChiTaRS3.1			BQ015306	SAFB2	chr19	5587207	+	DDX17	chr22	38886701	+
intron-intron	ENST00000261402	ENST00000376592		ChiTaRS3.1			R09898	NUAK1	chr12	106459136	-	MTHFR	chr1	11858848	-
intron-intron	ENST00000261402	ENST00000376583		ChiTaRS3.1			R09898	NUAK1	chr12	106459136	-	MTHFR	chr1	11858848	-
intron-intron	ENST00000261402	ENST00000376590		ChiTaRS3.1			R09898	NUAK1	chr12	106459136	-	MTHFR	chr1	11858848	-
intron-intron	ENST00000261402	ENST00000376585		ChiTaRS3.1			R09898	NUAK1	chr12	106459136	-	MTHFR	chr1	11858848	-
Frame-shit	ENST00000280154	ENST00000229239		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000280154	ENST00000396856		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000280154	ENST00000396861		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000280154	ENST00000396859		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000280154	ENST00000396858		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000393104	ENST00000229239		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000393104	ENST00000396856		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000393104	ENST00000396861		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000393104	ENST00000396859		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000393104	ENST00000396858		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
intron-3CDS	ENST00000481353	ENST00000229239		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
intron-3CDS	ENST00000481353	ENST00000396856		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
intron-3CDS	ENST00000481353	ENST00000396861		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
intron-3CDS	ENST00000481353	ENST00000396859		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
intron-3CDS	ENST00000481353	ENST00000396858		ChiTaRS3.1			BG926120	PDCD4	chr10	112641287	+	GAPDH	chr12	6646488	+
Frame-shit	ENST00000251546	ENST00000338779		ChiTaRS3.1			BF822200	FBXO44	chr1	11716072	+	MTSS1L	chr16	70698524	-
Frame-shit	ENST00000376770	ENST00000338779		ChiTaRS3.1			BF822200	FBXO44	chr1	11716072	+	MTSS1L	chr16	70698524	-
Frame-shit	ENST00000376768	ENST00000338779		ChiTaRS3.1			BF822200	FBXO44	chr1	11716072	+	MTSS1L	chr16	70698524	-
Frame-shit	ENST00000251547	ENST00000338779		ChiTaRS3.1			BF822200	FBXO44	chr1	11716072	+	MTSS1L	chr16	70698524	-
Frame-shit	ENST00000376760	ENST00000338779		ChiTaRS3.1			BF822200	FBXO44	chr1	11716072	+	MTSS1L	chr16	70698524	-
Frame-shit	ENST00000376762	ENST00000338779		ChiTaRS3.1			BF822200	FBXO44	chr1	11716072	+	MTSS1L	chr16	70698524	-
intron-3UTR	ENST00000406246	ENST00000300006		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000406246	ENST00000566490		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000406246	ENST00000452191		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-intron	ENST00000406246	ENST00000561692		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-intron	ENST00000406246	ENST00000565913		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000525693	ENST00000300006		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000525693	ENST00000566490		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000525693	ENST00000452191		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-intron	ENST00000525693	ENST00000561692		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-intron	ENST00000525693	ENST00000565913		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000308639	ENST00000300006		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000308639	ENST00000566490		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-3UTR	ENST00000308639	ENST00000452191		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-intron	ENST00000308639	ENST00000561692		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
intron-intron	ENST00000308639	ENST00000565913		ChiTaRS3.1			BG997651	RELA	chr11	65425836	-	C16orf45	chr16	15681397	+
3UTR-3UTR	ENST00000352732	ENST00000352732		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-intron	ENST00000352732	ENST00000565973		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-3UTR	ENST00000352732	ENST00000355100		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-intron	ENST00000352732	ENST00000562254		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-3UTR	ENST00000565973	ENST00000352732		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-intron	ENST00000565973	ENST00000565973		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-3UTR	ENST00000565973	ENST00000355100		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-intron	ENST00000565973	ENST00000562254		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-3UTR	ENST00000355100	ENST00000352732		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-intron	ENST00000355100	ENST00000565973		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-3UTR	ENST00000355100	ENST00000355100		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
3UTR-intron	ENST00000355100	ENST00000562254		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-3UTR	ENST00000562254	ENST00000352732		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-intron	ENST00000562254	ENST00000565973		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-3UTR	ENST00000562254	ENST00000355100		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
intron-intron	ENST00000562254	ENST00000562254		ChiTaRS3.1			BQ027678	ABHD2	chr15	89743817	-	ABHD2	chr15	89743770	+
5CDS-intron	ENST00000598913	ENST00000402291		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000598913	ENST00000356719		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000598913	ENST00000295031		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000598913	ENST00000453873		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000598913	ENST00000482513		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000314471	ENST00000402291		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000314471	ENST00000356719		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000314471	ENST00000295031		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000314471	ENST00000453873		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000314471	ENST00000482513		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
intron-intron	ENST00000594204	ENST00000402291		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
intron-intron	ENST00000594204	ENST00000356719		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
intron-intron	ENST00000594204	ENST00000295031		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
intron-intron	ENST00000594204	ENST00000453873		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
intron-intron	ENST00000594204	ENST00000482513		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000596368	ENST00000402291		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000596368	ENST00000356719		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000596368	ENST00000295031		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000596368	ENST00000453873		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
5CDS-intron	ENST00000596368	ENST00000482513		ChiTaRS3.1			AK075484	SAMD4B	chr19	39860755	+	KIAA1841	chr2	61342920	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000504114		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000357505		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000399396		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000446957		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000267068		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000504114		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000357505		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000399396		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000446957		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000267068		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000504114		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000357505		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000399396		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000446957		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000267068		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000504114		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000357505		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000399396		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000446957		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000267068		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000504114		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000357505		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000399396		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000446957		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000267068		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000504114		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000357505		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000399396		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000446957		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000267068		ChiTaRS3.1			BG982035	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-3UTR	ENST00000376281	ENST00000231061		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-intron	ENST00000376281	ENST00000537849		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-3UTR	ENST00000376263	ENST00000231061		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-intron	ENST00000376263	ENST00000537849		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-3UTR	ENST00000376264	ENST00000231061		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-intron	ENST00000376264	ENST00000537849		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-3UTR	ENST00000351839	ENST00000231061		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-intron	ENST00000351839	ENST00000537849		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-3UTR	ENST00000360384	ENST00000231061		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-intron	ENST00000360384	ENST00000537849		ChiTaRS3.1			AW239547	HNRNPK	chr9	86593109	-	SPARC	chr5	151043073	-
5CDS-3UTR	ENST00000401722	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000401722	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000401722	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000228318	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000228318	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000228318	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000188376	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000188376	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000188376	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000551917	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000551917	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000551917	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000552981	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000552981	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000552981	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
intron-3UTR	ENST00000551265	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
intron-3UTR	ENST00000551265	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
intron-intron	ENST00000551265	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
intron-3UTR	ENST00000547534	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
intron-3UTR	ENST00000547534	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
intron-intron	ENST00000547534	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000549338	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000549338	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000549338	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000548847	ENST00000272163		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-3UTR	ENST00000548847	ENST00000338179		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
5CDS-intron	ENST00000548847	ENST00000487054		ChiTaRS3.1			AI630623	SLC25A3	chr12	98995188	+	LBR	chr1	225589698	-
3UTR-intron	ENST00000534336	ENST00000516892		ChiTaRS3.1			AV704581	MALAT1	chr11	65267927	+	MEG3	chr14	101297645	+
In-frame	ENST00000262043	ENST00000330537		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
In-frame	ENST00000262043	ENST00000381474		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
In-frame	ENST00000262043	ENST00000543392		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
intron-3CDS	ENST00000509330	ENST00000330537		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
intron-3CDS	ENST00000509330	ENST00000381474		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
intron-3CDS	ENST00000509330	ENST00000543392		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
In-frame	ENST00000393387	ENST00000330537		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
In-frame	ENST00000393387	ENST00000381474		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
In-frame	ENST00000393387	ENST00000543392		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
intron-3CDS	ENST00000420043	ENST00000330537		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
intron-3CDS	ENST00000420043	ENST00000381474		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
intron-3CDS	ENST00000420043	ENST00000543392		ChiTaRS3.1			BG008491	PHF3	chr6	64422978	+	NOMO2	chr16	18518182	-
5CDS-intron	ENST00000263253	ENST00000353487		ChiTaRS3.1			DA384171	EP300	chr22	41523721	+	SPPL3	chr12	121211412	-
intron-3CDS	ENST00000520509	ENST00000380406		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000520509	ENST00000380405		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000520509	ENST00000320027		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000520509	ENST00000445273		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000520509	ENST00000429785		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-3CDS	ENST00000308108	ENST00000380406		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000308108	ENST00000380405		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000308108	ENST00000320027		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000308108	ENST00000445273		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000308108	ENST00000429785		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-3CDS	ENST00000396133	ENST00000380406		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000396133	ENST00000380405		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000396133	ENST00000320027		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000396133	ENST00000445273		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000396133	ENST00000429785		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-3CDS	ENST00000523476	ENST00000380406		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000523476	ENST00000380405		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000523476	ENST00000320027		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000523476	ENST00000445273		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
intron-intron	ENST00000523476	ENST00000429785		ChiTaRS3.1			BU561614	CCNE2	chr8	95906317	-	HSPH1	chr13	31718025	-
5CDS-3UTR	ENST00000340513	ENST00000393784		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000519860		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000523291		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000340513	ENST00000326654		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-3UTR	ENST00000300403	ENST00000393784		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000519860		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000523291		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5CDS-intron	ENST00000300403	ENST00000326654		ChiTaRS3.1			BQ648414	TPX2	chr20	30347895	+	ERGIC1	chr5	172379464	+
5UTR-3CDS	ENST00000607062	ENST00000314616		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
5UTR-3CDS	ENST00000607062	ENST00000347486		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
5UTR-3CDS	ENST00000260952	ENST00000314616		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
5UTR-3CDS	ENST00000260952	ENST00000347486		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607535	ENST00000314616		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607535	ENST00000347486		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607690	ENST00000314616		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607690	ENST00000347486		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607829	ENST00000314616		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
In-frame	ENST00000607829	ENST00000347486		ChiTaRS3.1			BM469052	ASNSD1	chr2	190526339	+	SUPT6H	chr17	27020712	+
intron-3CDS	ENST00000528796	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000528796	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000528796	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000354599	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000354599	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000354599	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000399602	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000399602	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000399602	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000343338	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000343338	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000343338	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000429541	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000429541	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000429541	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000005082	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000005082	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000005082	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000526601	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000526601	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000526601	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000438262	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000438262	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000438262	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-3CDS	ENST00000527386	ENST00000427805		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-5UTR	ENST00000527386	ENST00000553110		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000527386	ENST00000471855		ChiTaRS3.1			BE540117	ZNF195	chr11	3381262	-	RPL36A	chrX	100645962	+
intron-intron	ENST00000407184	ENST00000581078		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000407184	ENST00000582136		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000407184	ENST00000245543		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000407184	ENST00000584947		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000407184	ENST00000579096		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000396904	ENST00000581078		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000396904	ENST00000582136		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000396904	ENST00000245543		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000396904	ENST00000584947		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-intron	ENST00000396904	ENST00000579096		ChiTaRS3.1			AF226869	RBAK-RBAKDN	chr7	5106797	+	ARMC7	chr17	73127796	-
intron-3UTR	ENST00000409613	ENST00000370103		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
intron-intron	ENST00000409613	ENST00000462354		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
intron-intron	ENST00000409613	ENST00000536598		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
intron-intron	ENST00000409613	ENST00000338858		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
intron-intron	ENST00000409613	ENST00000359814		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-3UTR	ENST00000264059	ENST00000370103		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000264059	ENST00000462354		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000264059	ENST00000536598		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000264059	ENST00000338858		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000264059	ENST00000359814		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-3UTR	ENST00000409708	ENST00000370103		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000409708	ENST00000462354		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000409708	ENST00000536598		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000409708	ENST00000338858		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000409708	ENST00000359814		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-3UTR	ENST00000410095	ENST00000370103		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000410095	ENST00000462354		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000410095	ENST00000536598		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000410095	ENST00000338858		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
3UTR-intron	ENST00000410095	ENST00000359814		ChiTaRS3.1			BF944253	EFHD1	chr2	233547169	+	OLFM3	chr1	102268965	-
5CDS-5UTR	ENST00000553521	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553521	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553521	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553521	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553521	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000394366	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000394366	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000394366	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000394366	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000394366	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553548	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553548	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553548	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553548	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553548	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000557154	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000557154	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000557154	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000557154	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000557154	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000451983	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000451983	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000451983	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000451983	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000451983	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553635	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553635	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553635	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553635	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000553635	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
3UTR-5UTR	ENST00000556587	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
3UTR-5UTR	ENST00000556587	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
3UTR-5UTR	ENST00000556587	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
3UTR-5UTR	ENST00000556587	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
3UTR-5UTR	ENST00000556587	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000555349	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000555349	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000555349	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000555349	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000555349	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000554021	ENST00000447897		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000554021	ENST00000370490		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000554021	ENST00000434188		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000554021	ENST00000428560		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
5CDS-5UTR	ENST00000554021	ENST00000413937		ChiTaRS3.1			DA497174	SRSF5	chr14	70234945	+	SLITRK2	chrX	144903210	+
intron-3CDS	ENST00000471014	ENST00000330978		ChiTaRS3.1			AK098472	CTNNB1	chr3	41281339	+	BOLA2	chr16	29465668	-
intron-3CDS	ENST00000405570	ENST00000330978		ChiTaRS3.1			AK098472	CTNNB1	chr3	41281339	+	BOLA2	chr16	29465668	-
3UTR-3CDS	ENST00000396183	ENST00000330978		ChiTaRS3.1			AK098472	CTNNB1	chr3	41281339	+	BOLA2	chr16	29465668	-
3UTR-3CDS	ENST00000349496	ENST00000330978		ChiTaRS3.1			AK098472	CTNNB1	chr3	41281339	+	BOLA2	chr16	29465668	-
intron-3CDS	ENST00000453024	ENST00000330978		ChiTaRS3.1			AK098472	CTNNB1	chr3	41281339	+	BOLA2	chr16	29465668	-
3UTR-3CDS	ENST00000396185	ENST00000330978		ChiTaRS3.1			AK098472	CTNNB1	chr3	41281339	+	BOLA2	chr16	29465668	-
5CDS-intron	ENST00000435275	ENST00000249269		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000435275	ENST00000428154		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000435275	ENST00000420236		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000440692	ENST00000249269		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000440692	ENST00000428154		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000440692	ENST00000420236		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000372360	ENST00000249269		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000372360	ENST00000428154		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000372360	ENST00000420236		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-intron	ENST00000476545	ENST00000249269		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-intron	ENST00000476545	ENST00000428154		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-intron	ENST00000476545	ENST00000420236		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000360830	ENST00000249269		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000360830	ENST00000428154		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
5CDS-intron	ENST00000360830	ENST00000420236		ChiTaRS3.1			AW838567	RPS24	chr10	79797006	+	PMPCB	chr7	102963201	-
3UTR-3CDS	ENST00000398022	ENST00000252725		ChiTaRS3.1			BM797540	TM9SF4	chr20	30753362	+	ARPC1B	chr7	98987576	+
3UTR-3CDS	ENST00000398022	ENST00000451682		ChiTaRS3.1			BM797540	TM9SF4	chr20	30753362	+	ARPC1B	chr7	98987576	+
3UTR-intron	ENST00000398022	ENST00000474880		ChiTaRS3.1			BM797540	TM9SF4	chr20	30753362	+	ARPC1B	chr7	98987576	+
3UTR-3CDS	ENST00000217315	ENST00000252725		ChiTaRS3.1			BM797540	TM9SF4	chr20	30753362	+	ARPC1B	chr7	98987576	+
3UTR-3CDS	ENST00000217315	ENST00000451682		ChiTaRS3.1			BM797540	TM9SF4	chr20	30753362	+	ARPC1B	chr7	98987576	+
3UTR-intron	ENST00000217315	ENST00000474880		ChiTaRS3.1			BM797540	TM9SF4	chr20	30753362	+	ARPC1B	chr7	98987576	+
intron-3CDS	ENST00000602866	ENST00000230895		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-3CDS	ENST00000602866	ENST00000432074		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-intron	ENST00000602866	ENST00000510546		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-3CDS	ENST00000298852	ENST00000230895		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-3CDS	ENST00000298852	ENST00000432074		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-intron	ENST00000298852	ENST00000510546		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-3CDS	ENST00000530912	ENST00000230895		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-3CDS	ENST00000530912	ENST00000432074		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-intron	ENST00000530912	ENST00000510546		ChiTaRS3.1			BM843762	PSMC3	chr11	47447447	-	DAP	chr5	10681182	-
intron-3UTR	ENST00000373019	ENST00000405508		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-3UTR	ENST00000373019	ENST00000262709		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-intron	ENST00000373019	ENST00000448790		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-intron	ENST00000373019	ENST00000494242		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-3UTR	ENST00000448721	ENST00000405508		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-3UTR	ENST00000448721	ENST00000262709		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-intron	ENST00000448721	ENST00000448790		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-intron	ENST00000448721	ENST00000494242		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-3UTR	ENST00000489537	ENST00000405508		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-3UTR	ENST00000489537	ENST00000262709		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-intron	ENST00000489537	ENST00000448790		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
intron-intron	ENST00000489537	ENST00000494242		ChiTaRS3.1			AA490354	SF3A3	chr1	38423121	-	TOX4	chr14	21966045	+
5CDS-3UTR	ENST00000264052	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000264052	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000409112	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000409112	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000340126	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000340126	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000427101	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000427101	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000409824	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000409824	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000409341	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000409341	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000341950	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000341950	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-3UTR	ENST00000409897	ENST00000393868		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
5CDS-5UTR	ENST00000409897	ENST00000491123		ChiTaRS3.1			BP319935	SP100	chr2	231307732	+	SUCLG1	chr2	84650733	-
3UTR-3UTR	ENST00000414786	ENST00000265807		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-intron	ENST00000414786	ENST00000518040		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-intron	ENST00000414786	ENST00000519207		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-3UTR	ENST00000445220	ENST00000265807		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-intron	ENST00000445220	ENST00000518040		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-intron	ENST00000445220	ENST00000519207		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-3UTR	ENST00000262795	ENST00000265807		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-intron	ENST00000262795	ENST00000518040		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
3UTR-intron	ENST00000262795	ENST00000519207		ChiTaRS3.1			AW196447	SHANK3	chr22	51171299	-	SH2D4A	chr8	19252629	-
5CDS-3UTR	ENST00000409018	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5CDS-3UTR	ENST00000409018	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5CDS-intron	ENST00000409018	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
3UTR-3UTR	ENST00000492815	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
3UTR-3UTR	ENST00000492815	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
3UTR-intron	ENST00000492815	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000409014	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000409014	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-intron	ENST00000409014	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
intron-3UTR	ENST00000409675	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
intron-3UTR	ENST00000409675	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
intron-intron	ENST00000409675	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000409949	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000409949	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-intron	ENST00000409949	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000409242	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000409242	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-intron	ENST00000409242	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5CDS-3UTR	ENST00000312994	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5CDS-3UTR	ENST00000312994	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5CDS-intron	ENST00000312994	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000449989	ENST00000232125		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-3UTR	ENST00000449989	ENST00000477892		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
5UTR-intron	ENST00000449989	ENST00000469967		ChiTaRS3.1			BU565473	EXD2	chr14	69676499	+	FAM162A	chr3	122128725	+
3UTR-intron	ENST00000372969	ENST00000372969		ChiTaRS3.1			AK225705	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372969	ENST00000372967		ChiTaRS3.1			AK225705	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372967	ENST00000372969		ChiTaRS3.1			AK225705	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372967	ENST00000372967		ChiTaRS3.1			AK225705	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
intron-3UTR	ENST00000596528	ENST00000466764		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000596528	ENST00000376759		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000596528	ENST00000430348		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000596528	ENST00000376755		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000596528	ENST00000354480		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000466764		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000376759		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000430348		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000599743	ENST00000376755		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000354480		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000466764		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000376759		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000430348		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000300619	ENST00000376755		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000354480		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000466764		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000376759		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000430348		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000397082	ENST00000376755		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000354480		ChiTaRS3.1			BU689713	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3CDS	ENST00000254508	ENST00000316084		ChiTaRS3.1			BF814512	NUP210	chr3	13393247	-	RPS4X	chrX	71493824	-
intron-5UTR	ENST00000254508	ENST00000486733		ChiTaRS3.1			BF814512	NUP210	chr3	13393247	-	RPS4X	chrX	71493824	-
intron-intron	ENST00000254508	ENST00000373626		ChiTaRS3.1			BF814512	NUP210	chr3	13393247	-	RPS4X	chrX	71493824	-
intron-3CDS	ENST00000485755	ENST00000316084		ChiTaRS3.1			BF814512	NUP210	chr3	13393247	-	RPS4X	chrX	71493824	-
intron-5UTR	ENST00000485755	ENST00000486733		ChiTaRS3.1			BF814512	NUP210	chr3	13393247	-	RPS4X	chrX	71493824	-
intron-intron	ENST00000485755	ENST00000373626		ChiTaRS3.1			BF814512	NUP210	chr3	13393247	-	RPS4X	chrX	71493824	-
5UTR-3CDS	ENST00000296575	ENST00000452510		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
5UTR-intron	ENST00000296575	ENST00000354283		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
5UTR-intron	ENST00000296575	ENST00000509178		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
5UTR-3CDS	ENST00000434550	ENST00000452510		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
5UTR-intron	ENST00000434550	ENST00000354283		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
5UTR-intron	ENST00000434550	ENST00000509178		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
intron-3CDS	ENST00000511314	ENST00000452510		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
intron-intron	ENST00000511314	ENST00000354283		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
intron-intron	ENST00000511314	ENST00000509178		ChiTaRS3.1			DA881233	HHIP	chr4	145567438	+	DDX46	chr5	134094468	+
intron-3CDS	ENST00000263233	ENST00000378482		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000263233	ENST00000422612		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000263233	ENST00000545599		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000263233	ENST00000286824		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3UTR	ENST00000263233	ENST00000488893		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000378482		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000422612		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000545599		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000286824		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3UTR	ENST00000538567	ENST00000488893		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000378482		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000422612		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000545599		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000286824		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3UTR	ENST00000479808	ENST00000488893		ChiTaRS3.1			BI599645	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000330978	ENST00000317799		ChiTaRS3.1			DA426922	BOLA2	chr16	29830861	-	HADHB	chr2	26486245	+
intron-3CDS	ENST00000330978	ENST00000405867		ChiTaRS3.1			DA426922	BOLA2	chr16	29830861	-	HADHB	chr2	26486245	+
intron-3CDS	ENST00000330978	ENST00000537713		ChiTaRS3.1			DA426922	BOLA2	chr16	29830861	-	HADHB	chr2	26486245	+
intron-3CDS	ENST00000330978	ENST00000545822		ChiTaRS3.1			DA426922	BOLA2	chr16	29830861	-	HADHB	chr2	26486245	+
intron-3UTR	ENST00000330978	ENST00000494615		ChiTaRS3.1			DA426922	BOLA2	chr16	29830861	-	HADHB	chr2	26486245	+
In-frame	ENST00000263102	ENST00000355710		ChiTaRS3.1			M31213	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		ChiTaRS3.1			M31213	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
intron-3UTR	ENST00000267484	ENST00000521913		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000267484	ENST00000311151		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000267484	ENST00000523027		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000267484	ENST00000521983		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000395090	ENST00000521913		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000395090	ENST00000311151		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000395090	ENST00000523027		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000395090	ENST00000521983		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000342503	ENST00000521913		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000342503	ENST00000311151		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000342503	ENST00000523027		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000342503	ENST00000521983		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000557422	ENST00000521913		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-3UTR	ENST00000557422	ENST00000311151		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000557422	ENST00000523027		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
intron-intron	ENST00000557422	ENST00000521983		ChiTaRS3.1			AK054747	RTN1	chr14	60067154	-	DPYSL2	chr8	26514351	+
In-frame	ENST00000268379	ENST00000215909		ChiTaRS3.1			AA425586	UQCRC2	chr16	21976796	+	LGALS1	chr22	38075636	+
5CDS-3UTR	ENST00000268379	ENST00000489315		ChiTaRS3.1			AA425586	UQCRC2	chr16	21976796	+	LGALS1	chr22	38075636	+
In-frame	ENST00000561553	ENST00000215909		ChiTaRS3.1			AA425586	UQCRC2	chr16	21976796	+	LGALS1	chr22	38075636	+
5CDS-3UTR	ENST00000561553	ENST00000489315		ChiTaRS3.1			AA425586	UQCRC2	chr16	21976796	+	LGALS1	chr22	38075636	+
Frame-shit	ENST00000379440	ENST00000252891		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
Frame-shit	ENST00000379440	ENST00000598779		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
Frame-shit	ENST00000379440	ENST00000540131		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
5CDS-intron	ENST00000379440	ENST00000599594		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
Frame-shit	ENST00000430350	ENST00000252891		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
Frame-shit	ENST00000430350	ENST00000598779		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
Frame-shit	ENST00000430350	ENST00000540131		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
5CDS-intron	ENST00000430350	ENST00000599594		ChiTaRS3.1			DB257971	PRNP	chr20	4679973	+	NUMBL	chr19	41179556	-
5UTR-3CDS	ENST00000302351	ENST00000535741		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000302351	ENST00000510413		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000302351	ENST00000503716		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000302351	ENST00000357115		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-intron	ENST00000302351	ENST00000507224		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000510316	ENST00000535741		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000510316	ENST00000510413		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000510316	ENST00000503716		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000510316	ENST00000357115		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-intron	ENST00000510316	ENST00000507224		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-3CDS	ENST00000509284	ENST00000535741		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-3CDS	ENST00000509284	ENST00000510413		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-5UTR	ENST00000509284	ENST00000503716		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-5UTR	ENST00000509284	ENST00000357115		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-intron	ENST00000509284	ENST00000507224		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000537006	ENST00000535741		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000537006	ENST00000510413		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000537006	ENST00000503716		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000537006	ENST00000357115		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-intron	ENST00000537006	ENST00000507224		ChiTaRS3.1			BC008644	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-3CDS	ENST00000397910	ENST00000549441		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000397910	ENST00000395069		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-intron	ENST00000397910	ENST00000552651		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000380951	ENST00000549441		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000380951	ENST00000395069		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-intron	ENST00000380951	ENST00000552651		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000596956	ENST00000549441		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000596956	ENST00000395069		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-intron	ENST00000596956	ENST00000552651		ChiTaRS3.1			AK023298	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
Frame-shit	ENST00000264111	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000264111	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000264111	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000397081	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000397081	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000397081	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000409036	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000409036	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000409036	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000397087	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000397087	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000397087	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000538974	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000538974	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000538974	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000540783	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000540783	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000540783	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000539331	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000539331	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000539331	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
3UTR-3CDS	ENST00000473043	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
3UTR-intron	ENST00000473043	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
3UTR-intron	ENST00000473043	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
Frame-shit	ENST00000535187	ENST00000325558		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000535187	ENST00000543125		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
5CDS-intron	ENST00000535187	ENST00000538258		ChiTaRS3.1			BP342773	RAPGEF4	chr2	173832125	+	PGA3	chr11	60971045	+
intron-3CDS	ENST00000239926	ENST00000229330		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3UTR	ENST00000239926	ENST00000550335		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3CDS	ENST00000421631	ENST00000229330		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3UTR	ENST00000421631	ENST00000550335		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3CDS	ENST00000509812	ENST00000229330		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3UTR	ENST00000509812	ENST00000550335		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3CDS	ENST00000515645	ENST00000229330		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
intron-3UTR	ENST00000515645	ENST00000550335		ChiTaRS3.1			AA625768	MYOT	chr5	137087660	+	HCFC2	chr12	104496837	-
Frame-shit	ENST00000395146	ENST00000453744		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000394801		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000394803		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000394804		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000343106		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000321805		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000350435		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000338145		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
Frame-shit	ENST00000395146	ENST00000349311		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000504211		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000357194		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000505207		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000507845		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000502404		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000395146	ENST00000513098		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000453744		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000394801		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000394803		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000394804		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000343106		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000321805		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000350435		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000338145		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000307808	ENST00000349311		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000504211		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000357194		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000505207		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000507845		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000502404		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000307808	ENST00000513098		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000453744		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000394801		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000394803		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000394804		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000343106		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000321805		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000350435		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000338145		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-3CDS	ENST00000544085	ENST00000349311		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000504211		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000357194		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000505207		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000507845		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000502404		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
intron-5UTR	ENST00000544085	ENST00000513098		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000453744		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000394801		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000394803		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000394804		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000343106		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000321805		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000350435		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000338145		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-3CDS	ENST00000511996	ENST00000349311		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000504211		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000357194		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000505207		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000507845		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000502404		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
3UTR-5UTR	ENST00000511996	ENST00000513098		ChiTaRS3.1			AA100762	AFF1	chr4	87869724	+	UBE2D3	chr4	103731014	-
5CDS-5UTR	ENST00000262225	ENST00000513238		ChiTaRS3.1			DA857875	TMED2	chr12	124069276	+	PARM1	chr4	75858327	+
5CDS-5UTR	ENST00000262225	ENST00000307428		ChiTaRS3.1			DA857875	TMED2	chr12	124069276	+	PARM1	chr4	75858327	+
intron-5UTR	ENST00000509052	ENST00000513238		ChiTaRS3.1			DA857875	TMED2	chr12	124069276	+	PARM1	chr4	75858327	+
intron-5UTR	ENST00000509052	ENST00000307428		ChiTaRS3.1			DA857875	TMED2	chr12	124069276	+	PARM1	chr4	75858327	+
intron-3CDS	ENST00000403721	ENST00000331872		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000403721	ENST00000417584		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000403721	ENST00000311223		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000403721	ENST00000491322		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000403721	ENST00000339526		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000263629	ENST00000331872		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000263629	ENST00000417584		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000263629	ENST00000311223		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000263629	ENST00000491322		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000263629	ENST00000339526		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000394600	ENST00000331872		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000394600	ENST00000417584		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000394600	ENST00000311223		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000394600	ENST00000491322		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000394600	ENST00000339526		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000446660	ENST00000331872		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000446660	ENST00000417584		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-3CDS	ENST00000446660	ENST00000311223		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000446660	ENST00000491322		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000446660	ENST00000339526		ChiTaRS3.1			CB322028	MTIF2	chr2	55463925	+	GLUL	chr1	182353606	+
intron-5UTR	ENST00000555245	ENST00000304593		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-3UTR	ENST00000555245	ENST00000476924		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000353339		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000354503		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000409565		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000409616		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000337110		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000524634		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000555245	ENST00000349901		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-intron	ENST00000555245	ENST00000392059		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000304593		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-3UTR	ENST00000556605	ENST00000476924		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000353339		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000354503		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000409565		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000409616		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000337110		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000524634		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000556605	ENST00000349901		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-intron	ENST00000556605	ENST00000392059		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000304593		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-3UTR	ENST00000336643	ENST00000476924		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000353339		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000354503		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000409565		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000409616		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000337110		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000524634		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000336643	ENST00000349901		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-intron	ENST00000336643	ENST00000392059		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000304593		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-3UTR	ENST00000031146	ENST00000476924		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000353339		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000354503		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000409565		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000409616		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000337110		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000524634		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-5UTR	ENST00000031146	ENST00000349901		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
5UTR-intron	ENST00000031146	ENST00000392059		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000304593		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-3UTR	ENST00000557046	ENST00000476924		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000353339		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000354503		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000409565		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000409616		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000337110		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000524634		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-5UTR	ENST00000557046	ENST00000349901		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-intron	ENST00000557046	ENST00000392059		ChiTaRS3.1			BC003191	SLC39A9	chr14	69865776	+	MFF	chr2	228190007	+
intron-3CDS	ENST00000369754	ENST00000425759		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-3CDS	ENST00000369754	ENST00000292733		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369754	ENST00000542773		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369754	ENST00000263205		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369754	ENST00000406969		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369754	ENST00000382974		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369754	ENST00000541476		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369754	ENST00000478831		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-3CDS	ENST00000320172	ENST00000425759		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-3CDS	ENST00000320172	ENST00000292733		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000320172	ENST00000542773		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000320172	ENST00000263205		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000320172	ENST00000406969		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000320172	ENST00000382974		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000320172	ENST00000541476		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000320172	ENST00000478831		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-3CDS	ENST00000369756	ENST00000425759		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-3CDS	ENST00000369756	ENST00000292733		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369756	ENST00000542773		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369756	ENST00000263205		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369756	ENST00000406969		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369756	ENST00000382974		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369756	ENST00000541476		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
intron-intron	ENST00000369756	ENST00000478831		ChiTaRS3.1			DB259160	FAM46A	chr6	82462217	-	MED15	chr22	20937008	+
5CDS-intron	ENST00000314616	ENST00000390548		ChiTaRS3.1			H26239	SUPT6H	chr17	27011917	+	IGHG1	chr14	106054728	-
5CDS-intron	ENST00000347486	ENST00000390548		ChiTaRS3.1			H26239	SUPT6H	chr17	27011917	+	IGHG1	chr14	106054728	-
3UTR-intron	ENST00000258796	ENST00000358161		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000258796	ENST00000372739		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000258796	ENST00000372731		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000258796	ENST00000475367		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000407643	ENST00000358161		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000407643	ENST00000372739		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000407643	ENST00000372731		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000407643	ENST00000475367		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000403167	ENST00000358161		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000403167	ENST00000372739		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000403167	ENST00000372731		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-intron	ENST00000403167	ENST00000475367		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
intron-intron	ENST00000477439	ENST00000358161		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
intron-intron	ENST00000477439	ENST00000372739		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
intron-intron	ENST00000477439	ENST00000372731		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
intron-intron	ENST00000477439	ENST00000475367		ChiTaRS3.1			BC019028	TTYH3	chr7	2702076	+	SPTAN1	chr9	131418920	-
3UTR-3CDS	ENST00000400000	ENST00000558134		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
3UTR-3CDS	ENST00000400000	ENST00000560266		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
3UTR-3CDS	ENST00000400000	ENST00000268220		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
3UTR-3CDS	ENST00000400000	ENST00000455959		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000340541	ENST00000558134		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000340541	ENST00000560266		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000340541	ENST00000268220		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000340541	ENST00000455959		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000584796	ENST00000558134		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000584796	ENST00000560266		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000584796	ENST00000268220		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-3CDS	ENST00000584796	ENST00000455959		ChiTaRS3.1			BF094407	VAPA	chr18	9954428	+	SEC11A	chr15	85230966	-
intron-intron	ENST00000509603	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
intron-intron	ENST00000319524	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
intron-intron	ENST00000268763	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
3UTR-intron	ENST00000398988	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
intron-intron	ENST00000581975	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
intron-intron	ENST00000582410	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
intron-intron	ENST00000578981	ENST00000541515		ChiTaRS3.1			BJ998033	KSR1	chr17	25951814	+	LUC7L2	chr7	139060691	+
5CDS-5UTR	ENST00000322203	ENST00000262960		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
5CDS-5UTR	ENST00000322203	ENST00000598800		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
5CDS-5UTR	ENST00000322203	ENST00000597849		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
5CDS-intron	ENST00000322203	ENST00000594671		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
5CDS-intron	ENST00000322203	ENST00000601173		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
3UTR-5UTR	ENST00000467020	ENST00000262960		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
3UTR-5UTR	ENST00000467020	ENST00000598800		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
3UTR-5UTR	ENST00000467020	ENST00000597849		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
3UTR-intron	ENST00000467020	ENST00000594671		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
3UTR-intron	ENST00000467020	ENST00000601173		ChiTaRS3.1			DA314410	RPL10A	chr6	35436754	+	DPP9	chr19	4723759	-
5CDS-5UTR	ENST00000373839	ENST00000402983		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
5CDS-5UTR	ENST00000373839	ENST00000370031		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
5CDS-5UTR	ENST00000373839	ENST00000370032		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
5CDS-intron	ENST00000373839	ENST00000493676		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
3UTR-5UTR	ENST00000493669	ENST00000402983		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
3UTR-5UTR	ENST00000493669	ENST00000370031		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
3UTR-5UTR	ENST00000493669	ENST00000370032		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
3UTR-intron	ENST00000493669	ENST00000493676		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
intron-5UTR	ENST00000373836	ENST00000402983		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
intron-5UTR	ENST00000373836	ENST00000370031		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
intron-5UTR	ENST00000373836	ENST00000370032		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
intron-intron	ENST00000373836	ENST00000493676		ChiTaRS3.1			DB034670	PHACTR4	chr1	28733980	+	HENMT1	chr1	109202585	-
intron-3UTR	ENST00000389131	ENST00000441714		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-3UTR	ENST00000389131	ENST00000345046		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-3UTR	ENST00000389131	ENST00000458587		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-intron	ENST00000389131	ENST00000468947		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-3UTR	ENST00000518472	ENST00000441714		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-3UTR	ENST00000518472	ENST00000345046		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-3UTR	ENST00000518472	ENST00000458587		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-intron	ENST00000518472	ENST00000468947		ChiTaRS3.1			AW376389	LOXL2	chr8	23225671	+	BCAP31	chrX	152966288	-
intron-3UTR	ENST00000331872	ENST00000390237		ChiTaRS3.1			AW959339	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000417584	ENST00000390237		ChiTaRS3.1			AW959339	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000311223	ENST00000390237		ChiTaRS3.1			AW959339	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000491322	ENST00000390237		ChiTaRS3.1			AW959339	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000339526	ENST00000390237		ChiTaRS3.1			AW959339	GLUL	chr1	182353340	-	IGKC	chr2	89156791	-
intron-3UTR	ENST00000297533	ENST00000040584		ChiTaRS3.1			BG121046	TMUB1	chr7	150779980	-	HOXC8	chr12	54405204	+
intron-3UTR	ENST00000392818	ENST00000040584		ChiTaRS3.1			BG121046	TMUB1	chr7	150779980	-	HOXC8	chr12	54405204	+
intron-3UTR	ENST00000462940	ENST00000040584		ChiTaRS3.1			BG121046	TMUB1	chr7	150779980	-	HOXC8	chr12	54405204	+
intron-3UTR	ENST00000482202	ENST00000040584		ChiTaRS3.1			BG121046	TMUB1	chr7	150779980	-	HOXC8	chr12	54405204	+
intron-3UTR	ENST00000476627	ENST00000040584		ChiTaRS3.1			BG121046	TMUB1	chr7	150779980	-	HOXC8	chr12	54405204	+
5CDS-intron	ENST00000307961	ENST00000397389		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-intron	ENST00000307961	ENST00000538755		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-intron	ENST00000307961	ENST00000536150		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-5UTR	ENST00000307961	ENST00000538628		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-intron	ENST00000307961	ENST00000545612		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-intron	ENST00000307961	ENST00000542117		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-5UTR	ENST00000307961	ENST00000545317		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-intron	ENST00000307961	ENST00000454694		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5CDS-intron	ENST00000307961	ENST00000228922		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000397389		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000538755		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000536150		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-5UTR	ENST00000568588	ENST00000538628		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000545612		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000542117		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-5UTR	ENST00000568588	ENST00000545317		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000454694		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
5UTR-intron	ENST00000568588	ENST00000228922		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000397389		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000538755		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000536150		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-5UTR	ENST00000564517	ENST00000538628		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000545612		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000542117		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-5UTR	ENST00000564517	ENST00000545317		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000454694		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000564517	ENST00000228922		ChiTaRS3.1			BG910912	RPL4	chr15	66795396	-	OGFOD2	chr12	123462872	+
intron-intron	ENST00000521662	ENST00000335508		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521662	ENST00000462613		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521662	ENST00000409915		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521662	ENST00000414963		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521662	ENST00000487698		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521688	ENST00000335508		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521688	ENST00000462613		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521688	ENST00000409915		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521688	ENST00000414963		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000521688	ENST00000487698		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000520147	ENST00000335508		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000520147	ENST00000462613		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000520147	ENST00000409915		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000520147	ENST00000414963		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000520147	ENST00000487698		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000522407	ENST00000335508		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000522407	ENST00000462613		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000522407	ENST00000409915		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000522407	ENST00000414963		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
intron-intron	ENST00000522407	ENST00000487698		ChiTaRS3.1			AA699778	ENY2	chr8	110355633	-	SF3B1	chr2	198285152	+
In-frame	ENST00000369609	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369609	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000369609	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369607	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369607	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000369607	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369606	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369606	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000369606	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000263518	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000263518	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000263518	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000470142	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000470142	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000470142	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000393549	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000393549	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000393549	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000455588	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000455588	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000455588	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369602	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369602	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000369602	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369601	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
In-frame	ENST00000369601	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
5CDS-intron	ENST00000369601	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
3UTR-3CDS	ENST00000492469	ENST00000336761		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
3UTR-3CDS	ENST00000492469	ENST00000233078		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
3UTR-intron	ENST00000492469	ENST00000586579		ChiTaRS3.1			BI908202	IKBKG	chrX	153780405	+	DAZAP1	chr19	1429964	+
intron-3UTR	ENST00000377526	ENST00000270189		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
intron-3UTR	ENST00000377526	ENST00000429089		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
intron-3UTR	ENST00000377526	ENST00000220809		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
intron-3UTR	ENST00000377526	ENST00000352041		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
intron-3UTR	ENST00000377526	ENST00000519510		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
intron-intron	ENST00000377526	ENST00000429710		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
intron-intron	ENST00000377526	ENST00000524009		ChiTaRS3.1			W32996	AUP1	chr2	74756286	-	PLAT	chr8	42033211	-
3UTR-5UTR	ENST00000534336	ENST00000321442		ChiTaRS3.1			AU121864	MALAT1	chr11	65266901	+	SFXN1	chr5	174905593	+
3UTR-3UTR	ENST00000534336	ENST00000515791		ChiTaRS3.1			AU121864	MALAT1	chr11	65266901	+	SFXN1	chr5	174905593	+
3UTR-5UTR	ENST00000534336	ENST00000502393		ChiTaRS3.1			AU121864	MALAT1	chr11	65266901	+	SFXN1	chr5	174905593	+
intron-5UTR	ENST00000283943	ENST00000355221		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000283943	ENST00000520188		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000283943	ENST00000359530		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000283943	ENST00000523899		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000283943	ENST00000396774		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-5UTR	ENST00000389045	ENST00000355221		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389045	ENST00000520188		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389045	ENST00000359530		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389045	ENST00000523899		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389045	ENST00000396774		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-5UTR	ENST00000389044	ENST00000355221		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389044	ENST00000520188		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389044	ENST00000359530		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389044	ENST00000523899		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000389044	ENST00000396774		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-5UTR	ENST00000543084	ENST00000355221		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000543084	ENST00000520188		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000543084	ENST00000359530		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000543084	ENST00000523899		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000543084	ENST00000396774		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-5UTR	ENST00000409677	ENST00000355221		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000409677	ENST00000520188		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000409677	ENST00000359530		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000409677	ENST00000523899		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-intron	ENST00000409677	ENST00000396774		ChiTaRS3.1			DA283498	TRIP12	chr2	230725154	-	ATP6V1H	chr8	54755830	-
intron-3UTR	ENST00000267970	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000267970	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000267970	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3UTR	ENST00000346495	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000346495	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000346495	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3UTR	ENST00000424443	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000424443	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000424443	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3UTR	ENST00000561277	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000561277	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000561277	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3UTR	ENST00000559494	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000559494	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000559494	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3UTR	ENST00000558745	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000558745	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000558745	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3UTR	ENST00000558394	ENST00000330753		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000558394	ENST00000557419		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-intron	ENST00000558394	ENST00000554746		ChiTaRS3.1			AK095520	TSPAN3	chr15	77338661	-	FLRT2	chr14	86093150	+
intron-3CDS	ENST00000341084	ENST00000538352		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000341084	ENST00000025399		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000341084	ENST00000419869		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000519449	ENST00000538352		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000519449	ENST00000025399		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000519449	ENST00000419869		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000523255	ENST00000538352		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000523255	ENST00000025399		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000523255	ENST00000419869		ChiTaRS3.1			AW993767	RNF19A	chr8	101271337	-	STRAP	chr12	16052885	+
intron-3CDS	ENST00000245923	ENST00000356805		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000245923	ENST00000333896		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000430715	ENST00000356805		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000430715	ENST00000333896		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000344680	ENST00000356805		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000344680	ENST00000333896		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000590526	ENST00000356805		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000590526	ENST00000333896		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000589384	ENST00000356805		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000589384	ENST00000333896		ChiTaRS3.1			M78718	RTN2	chr19	45988646	-	SPTBN1	chr2	54859751	+
intron-3CDS	ENST00000395869	ENST00000399249		ChiTaRS3.1			DA562443	MYL3	chr3	46904876	-	MYBPC3	chr11	47357538	-
intron-3CDS	ENST00000395869	ENST00000545968		ChiTaRS3.1			DA562443	MYL3	chr3	46904876	-	MYBPC3	chr11	47357538	-
intron-3CDS	ENST00000395869	ENST00000256993		ChiTaRS3.1			DA562443	MYL3	chr3	46904876	-	MYBPC3	chr11	47357538	-
intron-3CDS	ENST00000292327	ENST00000399249		ChiTaRS3.1			DA562443	MYL3	chr3	46904876	-	MYBPC3	chr11	47357538	-
intron-3CDS	ENST00000292327	ENST00000545968		ChiTaRS3.1			DA562443	MYL3	chr3	46904876	-	MYBPC3	chr11	47357538	-
intron-3CDS	ENST00000292327	ENST00000256993		ChiTaRS3.1			DA562443	MYL3	chr3	46904876	-	MYBPC3	chr11	47357538	-
intron-3CDS	ENST00000265239	ENST00000234590		ChiTaRS3.1			BU192820	IQCG	chr3	197677812	-	ENO1	chr1	8926493	-
intron-3CDS	ENST00000455191	ENST00000234590		ChiTaRS3.1			BU192820	IQCG	chr3	197677812	-	ENO1	chr1	8926493	-
intron-3CDS	ENST00000453254	ENST00000234590		ChiTaRS3.1			BU192820	IQCG	chr3	197677812	-	ENO1	chr1	8926493	-
intron-3CDS	ENST00000480302	ENST00000234590		ChiTaRS3.1			BU192820	IQCG	chr3	197677812	-	ENO1	chr1	8926493	-
intron-3CDS	ENST00000220597	ENST00000356401		ChiTaRS3.1			BI024001	PAG1	chr8	82002840	-	ARIH2	chr3	49019115	+
intron-3CDS	ENST00000220597	ENST00000449376		ChiTaRS3.1			BI024001	PAG1	chr8	82002840	-	ARIH2	chr3	49019115	+
intron-intron	ENST00000220597	ENST00000490095		ChiTaRS3.1			BI024001	PAG1	chr8	82002840	-	ARIH2	chr3	49019115	+
intron-3CDS	ENST00000523463	ENST00000356401		ChiTaRS3.1			BI024001	PAG1	chr8	82002840	-	ARIH2	chr3	49019115	+
intron-3CDS	ENST00000523463	ENST00000449376		ChiTaRS3.1			BI024001	PAG1	chr8	82002840	-	ARIH2	chr3	49019115	+
intron-intron	ENST00000523463	ENST00000490095		ChiTaRS3.1			BI024001	PAG1	chr8	82002840	-	ARIH2	chr3	49019115	+
5UTR-3CDS	ENST00000369472	ENST00000337147		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000369472	ENST00000367075		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000369472	ENST00000392177		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-intron	ENST00000369472	ENST00000476189		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000337147		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000367075		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-3CDS	ENST00000336032	ENST00000392177		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
5UTR-intron	ENST00000336032	ENST00000476189		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000337147		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000367075		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-3CDS	ENST00000354922	ENST00000392177		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
intron-intron	ENST00000354922	ENST00000476189		ChiTaRS3.1			BM846053	PNRC1	chr6	89790532	+	EZR	chr6	159192300	-
Frame-shit	ENST00000243501	ENST00000538941		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
Frame-shit	ENST00000243501	ENST00000563290		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
Frame-shit	ENST00000243501	ENST00000324767		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
5CDS-intron	ENST00000243501	ENST00000562890		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
Frame-shit	ENST00000502283	ENST00000538941		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
Frame-shit	ENST00000502283	ENST00000563290		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
Frame-shit	ENST00000502283	ENST00000324767		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
5CDS-intron	ENST00000502283	ENST00000562890		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
intron-3CDS	ENST00000502772	ENST00000538941		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
intron-3CDS	ENST00000502772	ENST00000563290		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
intron-3CDS	ENST00000502772	ENST00000324767		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
intron-intron	ENST00000502772	ENST00000562890		ChiTaRS3.1			DA268556	PLA2G12A	chr4	110650757	-	SCAPER	chr15	76914171	-
intron-5UTR	ENST00000363840	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-intron	ENST00000363840	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-5UTR	ENST00000365524	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-intron	ENST00000365524	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-5UTR	ENST00000364822	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-intron	ENST00000364822	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-5UTR	ENST00000363859	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-intron	ENST00000363859	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-5UTR	ENST00000385578	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-intron	ENST00000385578	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
5CDS-5UTR	ENST00000363146	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
5CDS-intron	ENST00000363146	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-5UTR	ENST00000364084	ENST00000377961		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
intron-intron	ENST00000364084	ENST00000334979		ChiTaRS3.1			AU099439	GAS5	chr1	173835772	-	SCGN	chr6	25652502	+
3UTR-3UTR	ENST00000354618	ENST00000300584		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
3UTR-3UTR	ENST00000354618	ENST00000409931		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
3UTR-intron	ENST00000354618	ENST00000492078		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000469141	ENST00000300584		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000469141	ENST00000409931		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-intron	ENST00000469141	ENST00000492078		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000466743	ENST00000300584		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000466743	ENST00000409931		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-intron	ENST00000466743	ENST00000492078		ChiTaRS3.1			BX093103	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
5CDS-3UTR	ENST00000264705	ENST00000529230		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000264705	ENST00000415402		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000264705	ENST00000312055		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000264705	ENST00000354558		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-intron	ENST00000264705	ENST00000532321		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000403525	ENST00000529230		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000403525	ENST00000415402		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000403525	ENST00000312055		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-3UTR	ENST00000403525	ENST00000354558		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
5CDS-intron	ENST00000403525	ENST00000532321		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
intron-3UTR	ENST00000464159	ENST00000529230		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
intron-3UTR	ENST00000464159	ENST00000415402		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
intron-3UTR	ENST00000464159	ENST00000312055		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
intron-3UTR	ENST00000464159	ENST00000354558		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
intron-intron	ENST00000464159	ENST00000532321		ChiTaRS3.1			CN265854	CAD	chr2	27463935	+	CKAP5	chr11	46765176	-
intron-3UTR	ENST00000344034	ENST00000525943		ChiTaRS3.1			AI953699	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3UTR	ENST00000344034	ENST00000263576		ChiTaRS3.1			AI953699	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3UTR	ENST00000350803	ENST00000525943		ChiTaRS3.1			AI953699	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3UTR	ENST00000350803	ENST00000263576		ChiTaRS3.1			AI953699	PPM1G	chr2	27604190	+	DDX25	chr11	125776087	-
intron-3CDS	ENST00000417404	ENST00000355413		ChiTaRS3.1			BM547306	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-3CDS	ENST00000417404	ENST00000473247		ChiTaRS3.1			BM547306	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-intron	ENST00000417404	ENST00000495028		ChiTaRS3.1			BM547306	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-intron	ENST00000417404	ENST00000535825		ChiTaRS3.1			BM547306	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-intron	ENST00000417404	ENST00000492693		ChiTaRS3.1			BM547306	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-3UTR	ENST00000504329	ENST00000400921		ChiTaRS3.1			AI803072	TMEM110-MUSTN1	chr3	52877502	+	PRKCZ	chr1	2116712	-
intron-3UTR	ENST00000504329	ENST00000400920		ChiTaRS3.1			AI803072	TMEM110-MUSTN1	chr3	52877502	+	PRKCZ	chr1	2116712	-
intron-3UTR	ENST00000504329	ENST00000479263		ChiTaRS3.1			AI803072	TMEM110-MUSTN1	chr3	52877502	+	PRKCZ	chr1	2116712	-
intron-3CDS	ENST00000361961	ENST00000383710		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000361961	ENST00000357948		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000361961	ENST00000283269		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000361961	ENST00000490353		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000361961	ENST00000462768		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000395670	ENST00000383710		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000395670	ENST00000357948		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000395670	ENST00000283269		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000395670	ENST00000490353		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000395670	ENST00000462768		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000544797	ENST00000383710		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000544797	ENST00000357948		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000544797	ENST00000283269		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000544797	ENST00000490353		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000544797	ENST00000462768		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000361418	ENST00000383710		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000361418	ENST00000357948		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000361418	ENST00000283269		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000361418	ENST00000490353		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000361418	ENST00000462768		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000541463	ENST00000383710		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000541463	ENST00000357948		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000541463	ENST00000283269		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000541463	ENST00000490353		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000541463	ENST00000462768		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000547745	ENST00000383710		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000547745	ENST00000357948		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000547745	ENST00000283269		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000547745	ENST00000490353		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-intron	ENST00000547745	ENST00000462768		ChiTaRS3.1			DA344896	KIF21A	chr12	39836789	-	CADPS	chr3	62543122	-
intron-3CDS	ENST00000398944	ENST00000331768		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398944	ENST00000329331		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398944	ENST00000436070		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-5UTR	ENST00000398944	ENST00000453938		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000380876	ENST00000331768		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000380876	ENST00000329331		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000380876	ENST00000436070		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-5UTR	ENST00000380876	ENST00000453938		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398943	ENST00000331768		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398943	ENST00000329331		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398943	ENST00000436070		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-5UTR	ENST00000398943	ENST00000453938		ChiTaRS3.1			BC073965	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
5CDS-5UTR	ENST00000261592	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000261592	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000261592	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000261592	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000269185	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000269185	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000269185	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000269185	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-5UTR	ENST00000535384	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-5UTR	ENST00000535384	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-intron	ENST00000535384	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-intron	ENST00000535384	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5UTR-5UTR	ENST00000535475	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5UTR-5UTR	ENST00000535475	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5UTR-intron	ENST00000535475	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5UTR-intron	ENST00000535475	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000589544	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000589544	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000589544	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000589544	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000538587	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-5UTR	ENST00000538587	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000538587	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
5CDS-intron	ENST00000538587	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-5UTR	ENST00000590846	ENST00000405508		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-5UTR	ENST00000590846	ENST00000262709		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-intron	ENST00000590846	ENST00000448790		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
intron-intron	ENST00000590846	ENST00000494242		ChiTaRS3.1			DA245368	NOL4	chr18	31709836	-	TOX4	chr14	21945365	+
3UTR-3CDS	ENST00000400259	ENST00000356143		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-3CDS	ENST00000400259	ENST00000394520		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-3CDS	ENST00000400259	ENST00000347642		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000400259	ENST00000540015		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000400259	ENST00000502341		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000400259	ENST00000394514		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000400259	ENST00000394515		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000400259	ENST00000394519		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-3CDS	ENST00000344548	ENST00000356143		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-3CDS	ENST00000344548	ENST00000394520		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-3CDS	ENST00000344548	ENST00000347642		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000344548	ENST00000540015		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000344548	ENST00000502341		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000344548	ENST00000394514		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000344548	ENST00000394515		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
3UTR-intron	ENST00000344548	ENST00000394519		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000315554	ENST00000356143		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000315554	ENST00000394520		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000315554	ENST00000347642		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000315554	ENST00000540015		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000315554	ENST00000502341		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000315554	ENST00000394514		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000315554	ENST00000394515		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000315554	ENST00000394519		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000498236	ENST00000356143		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000498236	ENST00000394520		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000498236	ENST00000347642		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000498236	ENST00000540015		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000498236	ENST00000502341		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000498236	ENST00000394514		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000498236	ENST00000394515		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000498236	ENST00000394519		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000421089	ENST00000356143		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000421089	ENST00000394520		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-3CDS	ENST00000421089	ENST00000347642		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000421089	ENST00000540015		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000421089	ENST00000502341		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000421089	ENST00000394514		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000421089	ENST00000394515		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-intron	ENST00000421089	ENST00000394519		ChiTaRS3.1			AW960726	CDC42	chr1	22419099	+	RNF14	chr5	141359696	+
intron-5UTR	ENST00000345496	ENST00000162749		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-5UTR	ENST00000345496	ENST00000540022		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-intron	ENST00000345496	ENST00000366159		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-intron	ENST00000345496	ENST00000437813		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-5UTR	ENST00000477954	ENST00000162749		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-5UTR	ENST00000477954	ENST00000540022		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-intron	ENST00000477954	ENST00000366159		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-intron	ENST00000477954	ENST00000437813		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-5UTR	ENST00000330942	ENST00000162749		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-5UTR	ENST00000330942	ENST00000540022		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-intron	ENST00000330942	ENST00000366159		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
intron-intron	ENST00000330942	ENST00000437813		ChiTaRS3.1			AU124156	UBE2G2	chr21	46190069	-	TNFRSF1A	chr12	6451068	-
In-frame	ENST00000325974	ENST00000307149		ChiTaRS3.1			R54035	CCZ1	chr7	5938551	+	COG7	chr16	23428445	-
5CDS-intron	ENST00000325974	ENST00000569635		ChiTaRS3.1			R54035	CCZ1	chr7	5938551	+	COG7	chr16	23428445	-
5UTR-3CDS	ENST00000537980	ENST00000307149		ChiTaRS3.1			R54035	CCZ1	chr7	5938551	+	COG7	chr16	23428445	-
5UTR-intron	ENST00000537980	ENST00000569635		ChiTaRS3.1			R54035	CCZ1	chr7	5938551	+	COG7	chr16	23428445	-
intron-3CDS	ENST00000496860	ENST00000307149		ChiTaRS3.1			R54035	CCZ1	chr7	5938551	+	COG7	chr16	23428445	-
intron-intron	ENST00000496860	ENST00000569635		ChiTaRS3.1			R54035	CCZ1	chr7	5938551	+	COG7	chr16	23428445	-
intron-3UTR	ENST00000533211	ENST00000301738		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000533211	ENST00000564195		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000533211	ENST00000569689		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-3UTR	ENST00000309996	ENST00000301738		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000309996	ENST00000564195		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000309996	ENST00000569689		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-3UTR	ENST00000529997	ENST00000301738		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000529997	ENST00000564195		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000529997	ENST00000569689		ChiTaRS3.1			BM714711	SPTBN2	chr11	66455482	-	KCTD5	chr16	2758764	+
intron-intron	ENST00000398722	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398722	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398722	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000536736	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000536736	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000536736	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441551	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441551	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441551	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000300591	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000300591	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000300591	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398705	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398705	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398705	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000579038	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000579038	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000579038	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441893	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441893	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000441893	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000582408	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000582408	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000582408	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398686	ENST00000496817		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398686	ENST00000368719		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
intron-intron	ENST00000398686	ENST00000368720		ChiTaRS3.1			BQ327794	LOXHD1	chr18	44201991	+	S100A6	chr1	153536477	-
5UTR-5UTR	ENST00000394156	ENST00000332776		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000394156	ENST00000574788		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000394156	ENST00000304328		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000394156	ENST00000250066		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000394156	ENST00000572429		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000268603	ENST00000332776		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000268603	ENST00000574788		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000268603	ENST00000304328		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000268603	ENST00000250066		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000268603	ENST00000572429		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000566827	ENST00000332776		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000566827	ENST00000574788		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000566827	ENST00000304328		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000566827	ENST00000250066		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000566827	ENST00000572429		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000569624	ENST00000332776		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-5UTR	ENST00000569624	ENST00000574788		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000569624	ENST00000304328		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000569624	ENST00000250066		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
5UTR-intron	ENST00000569624	ENST00000572429		ChiTaRS3.1			AY380222	CDH11	chr16	65087707	-	USP6	chr17	5028508	+
intron-intron	ENST00000322349	ENST00000559332		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000322349	ENST00000558311		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000322349	ENST00000267973		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000322349	ENST00000558459		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000559332		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000558311		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000267973		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000558459		ChiTaRS3.1			BF817903	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
5CDS-intron	ENST00000579662	ENST00000258399		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000579662	ENST00000454775		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000579662	ENST00000415516		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000579662	ENST00000418019		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000579662	ENST00000338465		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000579662	ENST00000475553		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000339591	ENST00000258399		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000339591	ENST00000454775		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000339591	ENST00000415516		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000339591	ENST00000418019		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000339591	ENST00000338465		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000339591	ENST00000475553		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000200181	ENST00000258399		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000200181	ENST00000454775		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000200181	ENST00000415516		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000200181	ENST00000418019		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000200181	ENST00000338465		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000200181	ENST00000475553		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000450894	ENST00000258399		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000450894	ENST00000454775		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000450894	ENST00000415516		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000450894	ENST00000418019		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000450894	ENST00000338465		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000450894	ENST00000475553		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000449880	ENST00000258399		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000449880	ENST00000454775		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000449880	ENST00000415516		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000449880	ENST00000418019		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000449880	ENST00000338465		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
5CDS-intron	ENST00000449880	ENST00000475553		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-intron	ENST00000584558	ENST00000258399		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-intron	ENST00000584558	ENST00000454775		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-intron	ENST00000584558	ENST00000415516		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-intron	ENST00000584558	ENST00000418019		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-intron	ENST00000584558	ENST00000338465		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-intron	ENST00000584558	ENST00000475553		ChiTaRS3.1			BF871219	ITGB4	chr17	73750805	+	USP37	chr2	219432755	-
intron-3CDS	ENST00000384338	ENST00000538205		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-3CDS	ENST00000384338	ENST00000256412		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-3CDS	ENST00000384338	ENST00000522298		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-intron	ENST00000384338	ENST00000519953		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-3CDS	ENST00000364995	ENST00000538205		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-3CDS	ENST00000364995	ENST00000256412		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-3CDS	ENST00000364995	ENST00000522298		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
intron-intron	ENST00000364995	ENST00000519953		ChiTaRS3.1			AV713678	SNHG5	chr6	86387031	-	ADAMDEC1	chr8	24259483	+
5CDS-5UTR	ENST00000423701	ENST00000249923		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000423701	ENST00000439561		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-intron	ENST00000423701	ENST00000526191		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000273156	ENST00000249923		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000273156	ENST00000439561		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-intron	ENST00000273156	ENST00000526191		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000417572	ENST00000249923		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000417572	ENST00000439561		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-intron	ENST00000417572	ENST00000526191		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5UTR-5UTR	ENST00000536332	ENST00000249923		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5UTR-5UTR	ENST00000536332	ENST00000439561		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5UTR-intron	ENST00000536332	ENST00000526191		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000264454	ENST00000249923		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-5UTR	ENST00000264454	ENST00000439561		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5CDS-intron	ENST00000264454	ENST00000526191		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5UTR-5UTR	ENST00000493107	ENST00000249923		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5UTR-5UTR	ENST00000493107	ENST00000439561		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
5UTR-intron	ENST00000493107	ENST00000526191		ChiTaRS3.1			DA761161	SEC22C	chr3	42610357	-	COPB1	chr11	14520531	-
intron-5UTR	ENST00000525566	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000525566	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000525566	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000525566	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000525566	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000525566	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000429002	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000429002	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000429002	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000429002	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000429002	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000429002	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000503506	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000503506	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000503506	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000503506	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000503506	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000503506	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526691	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000526691	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526691	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526691	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526691	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000526691	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000388854	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000388854	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000388854	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000388854	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000388854	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000388854	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000354940	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000354940	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000354940	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000354940	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000354940	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000354940	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526390	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000526390	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526390	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526390	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526390	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000526390	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000529546	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000529546	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000529546	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000529546	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000529546	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000529546	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000540716	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000540716	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000540716	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000540716	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000540716	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000540716	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000524698	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000524698	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000524698	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000524698	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000524698	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000524698	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000542918	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000542918	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000542918	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000542918	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000542918	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000542918	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000378070	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000378070	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000378070	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000378070	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000378070	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000378070	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000397736	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000397736	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000397736	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000397736	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000397736	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000397736	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000427956	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000427956	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000427956	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000427956	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000427956	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000427956	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526950	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000526950	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526950	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526950	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526950	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000526950	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526006	ENST00000373017		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-3UTR	ENST00000526006	ENST00000470902		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526006	ENST00000540948		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526006	ENST00000277480		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-5UTR	ENST00000526006	ENST00000373013		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000526006	ENST00000372998		ChiTaRS3.1			BF801920	TXNRD1	chr12	104659393	-	LCN2	chr9	130911776	+
intron-intron	ENST00000541920	ENST00000299381		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000541920	ENST00000470481		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000300441	ENST00000299381		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000300441	ENST00000470481		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000504392	ENST00000299381		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000504392	ENST00000470481		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000427954	ENST00000299381		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000427954	ENST00000470481		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000502667	ENST00000299381		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000502667	ENST00000470481		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000506085	ENST00000299381		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-intron	ENST00000506085	ENST00000470481		ChiTaRS3.1			BQ183620	ACSF2	chr17	48542799	+	ANAPC16	chr10	73770944	-
intron-3CDS	ENST00000537716	ENST00000431239		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000537716	ENST00000369259		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000537716	ENST00000369258		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3UTR	ENST00000537716	ENST00000467213		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3UTR	ENST00000537716	ENST00000361293		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000301458	ENST00000431239		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000301458	ENST00000369259		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000301458	ENST00000369258		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3UTR	ENST00000301458	ENST00000467213		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3UTR	ENST00000301458	ENST00000361293		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000596246	ENST00000431239		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000596246	ENST00000369259		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3CDS	ENST00000596246	ENST00000369258		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3UTR	ENST00000596246	ENST00000467213		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-3UTR	ENST00000596246	ENST00000361293		ChiTaRS3.1			BG253724	CD320	chr19	8367074	-	CHD1L	chr1	146758146	+
intron-5UTR	ENST00000221859	ENST00000434600		ChiTaRS3.1			DA230064	POLR2I	chr19	36605858	-	LAMP2	chrX	119603043	-
intron-5UTR	ENST00000221859	ENST00000538785		ChiTaRS3.1			DA230064	POLR2I	chr19	36605858	-	LAMP2	chrX	119603043	-
intron-5UTR	ENST00000221859	ENST00000200639		ChiTaRS3.1			DA230064	POLR2I	chr19	36605858	-	LAMP2	chrX	119603043	-
intron-5UTR	ENST00000221859	ENST00000371335		ChiTaRS3.1			DA230064	POLR2I	chr19	36605858	-	LAMP2	chrX	119603043	-
intron-intron	ENST00000221859	ENST00000540603		ChiTaRS3.1			DA230064	POLR2I	chr19	36605858	-	LAMP2	chrX	119603043	-
intron-3CDS	ENST00000204549	ENST00000246533		ChiTaRS3.1			BG766662	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000589146		ChiTaRS3.1			BG766662	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000587718		ChiTaRS3.1			BG766662	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000590874		ChiTaRS3.1			BG766662	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000588815		ChiTaRS3.1			BG766662	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
intron-intron	ENST00000204549	ENST00000588780		ChiTaRS3.1			BG766662	PDCD7	chr15	65426042	-	CAPNS1	chr19	36632042	+
5UTR-3CDS	ENST00000485978	ENST00000549091		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-3CDS	ENST00000485978	ENST00000293879		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-intron	ENST00000485978	ENST00000547543		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-intron	ENST00000485978	ENST00000547944		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-intron	ENST00000485978	ENST00000315764		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371897	ENST00000549091		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371897	ENST00000293879		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371897	ENST00000547543		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371897	ENST00000547944		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371897	ENST00000315764		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371899	ENST00000549091		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371899	ENST00000293879		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371899	ENST00000547543		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371899	ENST00000547944		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371899	ENST00000315764		ChiTaRS3.1			BP285361	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
intron-intron	ENST00000239926	ENST00000330978		ChiTaRS3.1			DB249980	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-intron	ENST00000421631	ENST00000330978		ChiTaRS3.1			DB249980	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-intron	ENST00000509812	ENST00000330978		ChiTaRS3.1			DB249980	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-intron	ENST00000515645	ENST00000330978		ChiTaRS3.1			DB249980	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
Frame-shit	ENST00000601440	ENST00000400316		ChiTaRS3.1			DA250269	ZNF626	chr19	20844248	-	PHLPP1	chr18	60562243	+
Frame-shit	ENST00000601440	ENST00000262719		ChiTaRS3.1			DA250269	ZNF626	chr19	20844248	-	PHLPP1	chr18	60562243	+
5CDS-intron	ENST00000601440	ENST00000588953		ChiTaRS3.1			DA250269	ZNF626	chr19	20844248	-	PHLPP1	chr18	60562243	+
Frame-shit	ENST00000291750	ENST00000400316		ChiTaRS3.1			DA250269	ZNF626	chr19	20844248	-	PHLPP1	chr18	60562243	+
Frame-shit	ENST00000291750	ENST00000262719		ChiTaRS3.1			DA250269	ZNF626	chr19	20844248	-	PHLPP1	chr18	60562243	+
5CDS-intron	ENST00000291750	ENST00000588953		ChiTaRS3.1			DA250269	ZNF626	chr19	20844248	-	PHLPP1	chr18	60562243	+
In-frame	ENST00000307363	ENST00000334983		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
In-frame	ENST00000307363	ENST00000349718		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
Frame-shit	ENST00000399402	ENST00000334983		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
Frame-shit	ENST00000399402	ENST00000349718		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
In-frame	ENST00000445488	ENST00000334983		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
In-frame	ENST00000445488	ENST00000349718		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
In-frame	ENST00000307377	ENST00000334983		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
In-frame	ENST00000307377	ENST00000349718		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
intron-3CDS	ENST00000497796	ENST00000334983		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
intron-3CDS	ENST00000497796	ENST00000349718		ChiTaRS3.1			XX000016	GLB1	chr3	33055546	-	CMTM7	chr3	32483330	+
5CDS-3UTR	ENST00000375807	ENST00000466764		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000375807	ENST00000376759		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000375807	ENST00000430348		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000375807	ENST00000376755		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000375807	ENST00000354480		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000339901	ENST00000466764		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000339901	ENST00000376759		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000339901	ENST00000430348		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000339901	ENST00000376755		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000339901	ENST00000354480		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000534113	ENST00000466764		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000534113	ENST00000376759		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000534113	ENST00000430348		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000534113	ENST00000376755		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
5CDS-3UTR	ENST00000534113	ENST00000354480		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
intron-3UTR	ENST00000470305	ENST00000466764		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
intron-3UTR	ENST00000470305	ENST00000376759		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
intron-3UTR	ENST00000470305	ENST00000430348		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
intron-3UTR	ENST00000470305	ENST00000376755		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
intron-3UTR	ENST00000470305	ENST00000354480		ChiTaRS3.1			AK125614	SECISBP2	chr9	91973037	+	RBM3	chrX	48434778	+
intron-3UTR	ENST00000499247	ENST00000217402		ChiTaRS3.1			AA010026	TOB1	chr17	48943494	-	CHMP4B	chr20	32441921	+
intron-3UTR	ENST00000268957	ENST00000217402		ChiTaRS3.1			AA010026	TOB1	chr17	48943494	-	CHMP4B	chr20	32441921	+
intron-3UTR	ENST00000509385	ENST00000217402		ChiTaRS3.1			AA010026	TOB1	chr17	48943494	-	CHMP4B	chr20	32441921	+
5CDS-intron	ENST00000402285	ENST00000296252		ChiTaRS3.1			BF375146	RPS27A	chr2	55462629	+	LIPH	chr3	185232763	-
5CDS-intron	ENST00000402285	ENST00000424591		ChiTaRS3.1			BF375146	RPS27A	chr2	55462629	+	LIPH	chr3	185232763	-
5CDS-intron	ENST00000272317	ENST00000296252		ChiTaRS3.1			BF375146	RPS27A	chr2	55462629	+	LIPH	chr3	185232763	-
5CDS-intron	ENST00000272317	ENST00000424591		ChiTaRS3.1			BF375146	RPS27A	chr2	55462629	+	LIPH	chr3	185232763	-
5CDS-intron	ENST00000404735	ENST00000296252		ChiTaRS3.1			BF375146	RPS27A	chr2	55462629	+	LIPH	chr3	185232763	-
5CDS-intron	ENST00000404735	ENST00000424591		ChiTaRS3.1			BF375146	RPS27A	chr2	55462629	+	LIPH	chr3	185232763	-
intron-5UTR	ENST00000399332	ENST00000248089		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574151		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000396916		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000399332	ENST00000572355		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000574980		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000399332	ENST00000354679		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000248089		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574151		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000396916		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000553700	ENST00000572355		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000574980		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000553700	ENST00000354679		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000248089		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574151		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000396916		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-intron	ENST00000556474	ENST00000572355		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000574980		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
intron-5UTR	ENST00000556474	ENST00000354679		ChiTaRS3.1			BM840300	HECTD1	chr14	31578804	-	HCFC1R1	chr16	3073943	-
5CDS-intron	ENST00000382031	ENST00000340932		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000382031	ENST00000245222		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000382031	ENST00000601712		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000382031	ENST00000600537		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000382031	ENST00000598088		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000382031	ENST00000599033		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000382031	ENST00000599748		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000382031	ENST00000443164		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000382031	ENST00000599029		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000399453	ENST00000340932		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000399453	ENST00000245222		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000399453	ENST00000601712		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000399453	ENST00000600537		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000399453	ENST00000598088		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000399453	ENST00000599033		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000399453	ENST00000599748		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000399453	ENST00000443164		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000399453	ENST00000599029		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000300231	ENST00000340932		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000300231	ENST00000245222		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000300231	ENST00000601712		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000300231	ENST00000600537		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000300231	ENST00000598088		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000300231	ENST00000599033		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-3UTR	ENST00000300231	ENST00000599748		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000300231	ENST00000443164		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
5CDS-intron	ENST00000300231	ENST00000599029		ChiTaRS3.1			C02583	MAP1A	chr15	43815229	+	SPHK2	chr19	49133508	+
intron-3UTR	ENST00000238256	ENST00000356093		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000398863		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000343067		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000349460		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000373800		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000347529		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000373798		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000373797		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000460378		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000356093		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000398863		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000343067		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000349460		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000373800		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000347529		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000373798		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000373797		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000460378		ChiTaRS3.1			BE736064	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
Frame-shit	ENST00000451292	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000451292	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
Frame-shit	ENST00000377797	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000377797	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
Frame-shit	ENST00000445265	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000445265	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
Frame-shit	ENST00000323668	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000323668	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
Frame-shit	ENST00000439160	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000439160	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
intron-3CDS	ENST00000394269	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
intron-intron	ENST00000394269	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
Frame-shit	ENST00000504761	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000504761	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
Frame-shit	ENST00000513346	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
5CDS-intron	ENST00000513346	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
intron-3CDS	ENST00000506063	ENST00000379802		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
intron-intron	ENST00000506063	ENST00000418664		ChiTaRS3.1			BE165642	TCOF1	chr5	149776157	+	DSP	chr6	7581583	+
intron-intron	ENST00000401466	ENST00000510151		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000401466	ENST00000512862		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000401466	ENST00000515817		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000401466	ENST00000253490		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000401466	ENST00000508356		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000424086	ENST00000510151		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000424086	ENST00000512862		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000424086	ENST00000515817		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000424086	ENST00000253490		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000424086	ENST00000508356		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000272521	ENST00000510151		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000272521	ENST00000512862		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000272521	ENST00000515817		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000272521	ENST00000253490		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000272521	ENST00000508356		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000496203	ENST00000510151		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000496203	ENST00000512862		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000496203	ENST00000515817		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000496203	ENST00000253490		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000496203	ENST00000508356		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000409951	ENST00000510151		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000409951	ENST00000512862		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000409951	ENST00000515817		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000409951	ENST00000253490		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
intron-intron	ENST00000409951	ENST00000508356		ChiTaRS3.1			AW137134	TMEM177	chr2	120444426	-	FAM153B	chr5	175536297	-
Frame-shit	ENST00000332674	ENST00000244137		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000332674	ENST00000397032		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000332674	ENST00000436370		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
5CDS-intron	ENST00000332674	ENST00000591968		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000361248	ENST00000244137		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000361248	ENST00000397032		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000361248	ENST00000436370		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
5CDS-intron	ENST00000361248	ENST00000591968		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000239007	ENST00000244137		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000239007	ENST00000397032		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000239007	ENST00000436370		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
5CDS-intron	ENST00000239007	ENST00000591968		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000393134	ENST00000244137		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000393134	ENST00000397032		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000393134	ENST00000436370		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
5CDS-intron	ENST00000393134	ENST00000591968		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
3UTR-3CDS	ENST00000485566	ENST00000244137		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
3UTR-3CDS	ENST00000485566	ENST00000397032		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
3UTR-3CDS	ENST00000485566	ENST00000436370		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
3UTR-intron	ENST00000485566	ENST00000591968		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000369612	ENST00000244137		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000369612	ENST00000397032		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
Frame-shit	ENST00000369612	ENST00000436370		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
5CDS-intron	ENST00000369612	ENST00000591968		ChiTaRS3.1			CN415463	MXI1	chr10	111988023	+	PEPD	chr19	33980928	-
5CDS-5UTR	ENST00000560079	ENST00000373548		ChiTaRS3.1			BQ688507	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000373541		ChiTaRS3.1			BQ688507	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000490081		ChiTaRS3.1			BQ688507	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-5UTR	ENST00000299927	ENST00000373548		ChiTaRS3.1			BQ688507	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000373541		ChiTaRS3.1			BQ688507	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000490081		ChiTaRS3.1			BQ688507	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000215909	ENST00000433372		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000215909	ENST00000331145		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000215909	ENST00000395759		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000215909	ENST00000325278		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000215909	ENST00000461101		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000489315	ENST00000433372		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000489315	ENST00000331145		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000489315	ENST00000395759		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000489315	ENST00000325278		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
5CDS-intron	ENST00000489315	ENST00000461101		ChiTaRS3.1			BU155734	LGALS1	chr22	38075809	+	MTHFD2L	chr4	75023161	-
intron-5UTR	ENST00000560699	ENST00000266041		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000560699	ENST00000346281		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000560699	ENST00000485816		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000560699	ENST00000406595		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000560699	ENST00000434759		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-intron	ENST00000560699	ENST00000467462		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000305901	ENST00000266041		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000305901	ENST00000346281		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000305901	ENST00000485816		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000305901	ENST00000406595		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000305901	ENST00000434759		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-intron	ENST00000305901	ENST00000467462		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000561401	ENST00000266041		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000561401	ENST00000346281		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000561401	ENST00000485816		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000561401	ENST00000406595		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-5UTR	ENST00000561401	ENST00000434759		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-intron	ENST00000561401	ENST00000467462		ChiTaRS3.1			D38535	ONECUT1	chr15	53082077	-	ITIH4	chr3	52864662	-
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			AA258146	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
5CDS-3UTR	ENST00000552285	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000552285	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000315970	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000315970	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000439210	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000439210	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000389146	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000389146	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000413095	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000413095	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000551035	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000551035	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000435406	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000435406	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000257966	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000257966	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-3UTR	ENST00000389142	ENST00000301463		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
5CDS-intron	ENST00000389142	ENST00000547837		ChiTaRS3.1			AA296951	OS9	chr12	58114219	+	SPRYD3	chr12	53458858	-
In-frame	ENST00000525364	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000270176	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000420247	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000533862	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000279270	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000524944	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
In-frame	ENST00000527009	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
intron-3CDS	ENST00000534462	ENST00000225964		ChiTaRS3.1			CV337912	SCYL1	chr11	65300218	+	COL1A1	chr17	48268274	-
intron-3UTR	ENST00000323963	ENST00000254108		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000323963	ENST00000380244		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000323963	ENST00000568685		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000323963	ENST00000474990		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000440191	ENST00000254108		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000440191	ENST00000380244		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000440191	ENST00000568685		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000440191	ENST00000474990		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000356531	ENST00000254108		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000356531	ENST00000380244		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-3UTR	ENST00000356531	ENST00000568685		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000356531	ENST00000474990		ChiTaRS3.1			BM781579	EIF4A2	chr3	186506183	+	FUS	chr16	31202784	+
intron-intron	ENST00000393957	ENST00000374660		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000393957	ENST00000361713		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000393957	ENST00000602533		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000393957	ENST00000475522		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000564104	ENST00000374660		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000564104	ENST00000361713		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000564104	ENST00000602533		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000564104	ENST00000475522		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000290942	ENST00000374660		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000290942	ENST00000361713		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000290942	ENST00000602533		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000290942	ENST00000475522		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000562206	ENST00000374660		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000562206	ENST00000361713		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000562206	ENST00000602533		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-intron	ENST00000562206	ENST00000475522		ChiTaRS3.1			BF995465	TPPP3	chr16	67424491	-	ANKRD30A	chr10	37436663	+
intron-5UTR	ENST00000297185	ENST00000519807		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000297185	ENST00000009589		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000297185	ENST00000524349		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000297185	ENST00000520490		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000297185	ENST00000520627		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000297185	ENST00000521262		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000297185	ENST00000523936		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000297185	ENST00000519606		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000297185	ENST00000518875		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000501917	ENST00000519807		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000501917	ENST00000009589		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000501917	ENST00000524349		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000501917	ENST00000520490		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000501917	ENST00000520627		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-5UTR	ENST00000501917	ENST00000521262		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000501917	ENST00000523936		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000501917	ENST00000519606		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
intron-intron	ENST00000501917	ENST00000518875		ChiTaRS3.1			BM818077	HSPA9	chr5	137902738	-	RPS20	chr8	56987059	-
In-frame	ENST00000332050	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000332050	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000397938	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000397938	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000406548	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000406548	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000331029	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000331029	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000414183	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000414183	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000333395	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000333395	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000332035	ENST00000262053		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000332035	ENST00000539132		ChiTaRS3.1			AF047022	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-3UTR	ENST00000307194	ENST00000580170		ChiTaRS3.1			BC029442	GIMAP1	chr7	150417606	+	PTPRM	chr18	8406399	+
5CDS-3UTR	ENST00000307194	ENST00000332175		ChiTaRS3.1			BC029442	GIMAP1	chr7	150417606	+	PTPRM	chr18	8406399	+
5CDS-intron	ENST00000307194	ENST00000400060		ChiTaRS3.1			BC029442	GIMAP1	chr7	150417606	+	PTPRM	chr18	8406399	+
5CDS-3UTR	ENST00000307194	ENST00000400053		ChiTaRS3.1			BC029442	GIMAP1	chr7	150417606	+	PTPRM	chr18	8406399	+
5CDS-3UTR	ENST00000307194	ENST00000444013		ChiTaRS3.1			BC029442	GIMAP1	chr7	150417606	+	PTPRM	chr18	8406399	+
5CDS-intron	ENST00000307194	ENST00000578571		ChiTaRS3.1			BC029442	GIMAP1	chr7	150417606	+	PTPRM	chr18	8406399	+
intron-3CDS	ENST00000394391	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
intron-3CDS	ENST00000567518	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
intron-3CDS	ENST00000565961	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
intron-3CDS	ENST00000569370	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
intron-3CDS	ENST00000568940	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
intron-3CDS	ENST00000569979	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
intron-3CDS	ENST00000569246	ENST00000295266		ChiTaRS3.1			AI393336	CIAPIN1	chr16	57462595	+	PDHA2	chr4	96761833	-
3UTR-3UTR	ENST00000322002	ENST00000282388		ChiTaRS3.1			AW993390	SOX11	chr2	5840532	+	ZFP36L2	chr2	43450254	-
In-frame	ENST00000450793	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000450793	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000450793	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000450793	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000538141	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000538141	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000538141	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000538141	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000380180	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000380180	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000380180	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000380180	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000318007	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000318007	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000318007	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000318007	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000437932	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000437932	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000437932	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000437932	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000317968	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000317968	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000317968	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000317968	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000542407	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000542407	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000542407	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000542407	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000508216	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000508216	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000508216	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000508216	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000514743	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
In-frame	ENST00000514743	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000514743	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
5CDS-intron	ENST00000514743	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000380176	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000380176	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000380176	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000380176	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000359265	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000359265	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000359265	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000359265	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000512274	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000512274	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000512274	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000512274	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000504489	ENST00000432176		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-3CDS	ENST00000504489	ENST00000409923		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000504489	ENST00000498833		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
intron-intron	ENST00000504489	ENST00000409763		ChiTaRS3.1			DA675800	PDLIM5	chr4	95445026	+	FAM126A	chr7	23004152	-
3UTR-3CDS	ENST00000608317	ENST00000369002		ChiTaRS3.1			BU173275	PAXIP1-AS1	chr7	154795846	+	SEC63	chr6	108194117	-
3UTR-intron	ENST00000608317	ENST00000460009		ChiTaRS3.1			BU173275	PAXIP1-AS1	chr7	154795846	+	SEC63	chr6	108194117	-
3UTR-3CDS	ENST00000377403	ENST00000242261		ChiTaRS3.1			BG994288	H6PD	chr1	9325969	+	TWIST1	chr7	19156535	-
3UTR-3CDS	ENST00000602477	ENST00000242261		ChiTaRS3.1			BG994288	H6PD	chr1	9325969	+	TWIST1	chr7	19156535	-
3UTR-3CDS	ENST00000495451	ENST00000242261		ChiTaRS3.1			BG994288	H6PD	chr1	9325969	+	TWIST1	chr7	19156535	-
5CDS-3UTR	ENST00000308677	ENST00000453258		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000308677	ENST00000543964		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000308677	ENST00000371207		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000308677	ENST00000371203		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000308677	ENST00000539125		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-intron	ENST00000308677	ENST00000371205		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-intron	ENST00000308677	ENST00000490659		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-3UTR	ENST00000350356	ENST00000453258		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-3UTR	ENST00000350356	ENST00000543964		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-3UTR	ENST00000350356	ENST00000371207		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-3UTR	ENST00000350356	ENST00000371203		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-3UTR	ENST00000350356	ENST00000539125		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-intron	ENST00000350356	ENST00000371205		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5UTR-intron	ENST00000350356	ENST00000490659		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-3UTR	ENST00000590853	ENST00000453258		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-3UTR	ENST00000590853	ENST00000543964		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-3UTR	ENST00000590853	ENST00000371207		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-3UTR	ENST00000590853	ENST00000371203		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-3UTR	ENST00000590853	ENST00000539125		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-intron	ENST00000590853	ENST00000371205		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-intron	ENST00000590853	ENST00000490659		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000589994	ENST00000453258		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000589994	ENST00000543964		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000589994	ENST00000371207		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000589994	ENST00000371203		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-3UTR	ENST00000589994	ENST00000539125		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-intron	ENST00000589994	ENST00000371205		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
5CDS-intron	ENST00000589994	ENST00000490659		ChiTaRS3.1			DR006627	PRKACA	chr19	14217572	-	ENTPD1	chr10	97627682	-
intron-3CDS	ENST00000412585	ENST00000597960		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000412585	ENST00000610101		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000412585	ENST00000596558		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000412585	ENST00000222308		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000412585	ENST00000608443		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000412585	ENST00000453489		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-3CDS	ENST00000425848	ENST00000597960		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000425848	ENST00000610101		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000425848	ENST00000596558		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000425848	ENST00000222308		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000425848	ENST00000608443		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000425848	ENST00000453489		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-3CDS	ENST00000450871	ENST00000597960		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000450871	ENST00000610101		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000450871	ENST00000596558		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000450871	ENST00000222308		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000450871	ENST00000608443		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000450871	ENST00000453489		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-3CDS	ENST00000359635	ENST00000597960		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000359635	ENST00000610101		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000359635	ENST00000596558		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000359635	ENST00000222308		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000359635	ENST00000608443		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000359635	ENST00000453489		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-3CDS	ENST00000435618	ENST00000597960		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000435618	ENST00000610101		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000435618	ENST00000596558		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000435618	ENST00000222308		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000435618	ENST00000608443		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000435618	ENST00000453489		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-3CDS	ENST00000421349	ENST00000597960		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000421349	ENST00000610101		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000421349	ENST00000596558		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000421349	ENST00000222308		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000421349	ENST00000608443		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
intron-intron	ENST00000421349	ENST00000453489		ChiTaRS3.1			BQ063441	HLA-B	chr6	2628787	+	FKBP8	chr19	18650473	-
5UTR-5UTR	ENST00000374736	ENST00000376281		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374736	ENST00000376263		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374736	ENST00000376264		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374736	ENST00000351839		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374736	ENST00000360384		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
intron-5UTR	ENST00000494467	ENST00000376281		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
intron-5UTR	ENST00000494467	ENST00000376263		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
intron-5UTR	ENST00000494467	ENST00000376264		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
intron-5UTR	ENST00000494467	ENST00000351839		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
intron-5UTR	ENST00000494467	ENST00000360384		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000423487	ENST00000376281		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000423487	ENST00000376263		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000423487	ENST00000376264		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000423487	ENST00000351839		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000423487	ENST00000360384		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374733	ENST00000376281		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374733	ENST00000376263		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374733	ENST00000376264		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374733	ENST00000351839		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5UTR-5UTR	ENST00000374733	ENST00000360384		ChiTaRS3.1			CR983438	ABCA1	chr9	107690215	-	HNRNPK	chr9	86593369	-
5CDS-5UTR	ENST00000377459	ENST00000527132		ChiTaRS3.1			DA794890	HIST1H2AH	chr6	27115245	+	DKK3	chr11	12030034	-
5CDS-5UTR	ENST00000377459	ENST00000396505		ChiTaRS3.1			DA794890	HIST1H2AH	chr6	27115245	+	DKK3	chr11	12030034	-
5CDS-5UTR	ENST00000377459	ENST00000326932		ChiTaRS3.1			DA794890	HIST1H2AH	chr6	27115245	+	DKK3	chr11	12030034	-
5CDS-5UTR	ENST00000377459	ENST00000525493		ChiTaRS3.1			DA794890	HIST1H2AH	chr6	27115245	+	DKK3	chr11	12030034	-
5CDS-5UTR	ENST00000377459	ENST00000450094		ChiTaRS3.1			DA794890	HIST1H2AH	chr6	27115245	+	DKK3	chr11	12030034	-
In-frame	ENST00000392069	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000344493	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000350526	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000336840	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000392070	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000409551	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-3CDS	ENST00000464706	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000409828	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000258387	ENST00000406961		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000469850		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000405141		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000407230		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000538539		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000288599		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000348332		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000395856		ChiTaRS3.1			AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000491306	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5CDS-intron	ENST00000491306	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
In-frame	ENST00000600880	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5CDS-intron	ENST00000600880	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
In-frame	ENST00000446558	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5CDS-intron	ENST00000446558	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-3CDS	ENST00000456586	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-intron	ENST00000456586	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-3CDS	ENST00000598925	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-intron	ENST00000598925	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-3CDS	ENST00000427280	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-intron	ENST00000427280	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-3CDS	ENST00000441179	ENST00000295373		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5UTR-intron	ENST00000441179	ENST00000479345		ChiTaRS3.1			DR759675	RPL37A	chr2	217364051	+	DHX57	chr2	39046202	-
5CDS-5UTR	ENST00000246551	ENST00000254636		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000246551	ENST00000449247		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000246551	ENST00000410111		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000246551	ENST00000442664		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000246551	ENST00000409051		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-intron	ENST00000246551	ENST00000490238		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000437550	ENST00000254636		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000437550	ENST00000449247		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000437550	ENST00000410111		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000437550	ENST00000442664		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-5UTR	ENST00000437550	ENST00000409051		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
5CDS-intron	ENST00000437550	ENST00000490238		ChiTaRS3.1			BM925115	HCST	chr19	36394762	+	IMMT	chr2	86406640	-
Frame-shit	ENST00000373382	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000373382	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000373382	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000373382	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-3UTR	ENST00000373382	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-intron	ENST00000373382	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000263559	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000263559	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000263559	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000263559	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-3UTR	ENST00000263559	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-intron	ENST00000263559	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000395098	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000395098	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000395098	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000395098	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-3UTR	ENST00000395098	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-intron	ENST00000395098	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000546041	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000546041	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000546041	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000546041	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3UTR	ENST00000546041	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-intron	ENST00000546041	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
3UTR-3CDS	ENST00000490696	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
3UTR-3CDS	ENST00000490696	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
3UTR-3CDS	ENST00000490696	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
3UTR-3CDS	ENST00000490696	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
3UTR-3UTR	ENST00000490696	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
3UTR-intron	ENST00000490696	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000541711	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000541711	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000541711	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3CDS	ENST00000541711	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-3UTR	ENST00000541711	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5UTR-intron	ENST00000541711	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000489794	ENST00000323798		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000489794	ENST00000263276		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000489794	ENST00000541188		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
Frame-shit	ENST00000489794	ENST00000544287		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-3UTR	ENST00000489794	ENST00000540532		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
5CDS-intron	ENST00000489794	ENST00000457974		ChiTaRS3.1			DA766946	VPS26A	chr10	70892770	+	GYS1	chr19	49481214	-
intron-3CDS	ENST00000215832	ENST00000295598		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000215832	ENST00000537345		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000215832	ENST00000369496		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-intron	ENST00000215832	ENST00000491156		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000398822	ENST00000295598		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000398822	ENST00000537345		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000398822	ENST00000369496		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-intron	ENST00000398822	ENST00000491156		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000544786	ENST00000295598		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000544786	ENST00000537345		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000544786	ENST00000369496		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-intron	ENST00000544786	ENST00000491156		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000491588	ENST00000295598		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000491588	ENST00000537345		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-3CDS	ENST00000491588	ENST00000369496		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
intron-intron	ENST00000491588	ENST00000491156		ChiTaRS3.1			BG877408	MAPK1	chr22	22115665	-	ATP1A1	chr1	116941300	+
5CDS-5UTR	ENST00000339697	ENST00000409086		ChiTaRS3.1			DA221098	SERINC1	chr6	122792843	-	SLC39A10	chr2	196544755	+
5CDS-5UTR	ENST00000339697	ENST00000359634		ChiTaRS3.1			DA221098	SERINC1	chr6	122792843	-	SLC39A10	chr2	196544755	+
5CDS-5UTR	ENST00000339697	ENST00000541054		ChiTaRS3.1			DA221098	SERINC1	chr6	122792843	-	SLC39A10	chr2	196544755	+
5CDS-intron	ENST00000339697	ENST00000464301		ChiTaRS3.1			DA221098	SERINC1	chr6	122792843	-	SLC39A10	chr2	196544755	+
intron-3UTR	ENST00000340170	ENST00000295633		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000340170	ENST00000424703		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000340170	ENST00000485968		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-3UTR	ENST00000263208	ENST00000295633		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000263208	ENST00000424703		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000263208	ENST00000485968		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-3UTR	ENST00000541063	ENST00000295633		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000541063	ENST00000424703		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000541063	ENST00000485968		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-3UTR	ENST00000546308	ENST00000295633		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000546308	ENST00000424703		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000546308	ENST00000485968		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-3UTR	ENST00000464189	ENST00000295633		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000464189	ENST00000424703		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-intron	ENST00000464189	ENST00000485968		ChiTaRS3.1			CF130902	HIRA	chr22	19422311	+	FSTL1	chr3	120113857	-
intron-3CDS	ENST00000346872	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000346872	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000346872	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000394189	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000394189	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000394189	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000439167	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000439167	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000439167	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000535189	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000535189	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000535189	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377944	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377944	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000377944	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377945	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377945	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000377945	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377952	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377952	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000377952	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377958	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000377958	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000377958	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000346243	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000346243	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000346243	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000350532	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000350532	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000350532	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000351680	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000351680	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000351680	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000467757	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000467757	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000467757	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000439016	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000439016	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000439016	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000583368	ENST00000361436		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-3CDS	ENST00000583368	ENST00000536368		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
intron-5UTR	ENST00000583368	ENST00000497322		ChiTaRS3.1			BF089907	IKZF3	chr17	37921309	-	RPL12	chr9	130210198	-
3UTR-3UTR	ENST00000229270	ENST00000229795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-3UTR	ENST00000229270	ENST00000229794		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-intron	ENST00000229270	ENST00000468133		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-intron	ENST00000229270	ENST00000310795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-3UTR	ENST00000396705	ENST00000229795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-3UTR	ENST00000396705	ENST00000229794		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-intron	ENST00000396705	ENST00000468133		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-intron	ENST00000396705	ENST00000310795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
intron-3UTR	ENST00000488464	ENST00000229795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
intron-3UTR	ENST00000488464	ENST00000229794		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
intron-intron	ENST00000488464	ENST00000468133		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
intron-intron	ENST00000488464	ENST00000310795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-3UTR	ENST00000535434	ENST00000229795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-3UTR	ENST00000535434	ENST00000229794		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-intron	ENST00000535434	ENST00000468133		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
3UTR-intron	ENST00000535434	ENST00000310795		ChiTaRS3.1			AI652202	TPI1	chr12	6979938	-	MAPK14	chr6	36076833	-
intron-3CDS	ENST00000548589	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
intron-intron	ENST00000548589	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
intron-intron	ENST00000548589	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
Frame-shit	ENST00000552699	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000552699	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000552699	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
Frame-shit	ENST00000267115	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000267115	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000267115	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
Frame-shit	ENST00000549385	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000549385	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000549385	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
Frame-shit	ENST00000423828	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000423828	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000423828	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
Frame-shit	ENST00000395006	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000395006	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5CDS-intron	ENST00000395006	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5UTR-3CDS	ENST00000547798	ENST00000256646		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5UTR-intron	ENST00000547798	ENST00000602566		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
5UTR-intron	ENST00000547798	ENST00000493703		ChiTaRS3.1			BX505457	TMBIM6	chr12	50146794	+	NOTCH2	chr1	120512322	-
intron-intron	ENST00000247161	ENST00000352210		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000247161	ENST00000367999		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000247161	ENST00000544598		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000247161	ENST00000495483		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000247161	ENST00000535223		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000247161	ENST00000432542		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000592066	ENST00000352210		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000592066	ENST00000367999		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000592066	ENST00000544598		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000592066	ENST00000495483		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000592066	ENST00000535223		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000592066	ENST00000432542		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000376983	ENST00000352210		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000376983	ENST00000367999		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000376983	ENST00000544598		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000376983	ENST00000495483		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000376983	ENST00000535223		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000376983	ENST00000432542		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000343894	ENST00000352210		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000343894	ENST00000367999		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000343894	ENST00000544598		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000343894	ENST00000495483		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000343894	ENST00000535223		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000343894	ENST00000432542		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000468956	ENST00000352210		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000468956	ENST00000367999		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000468956	ENST00000544598		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000468956	ENST00000495483		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000468956	ENST00000535223		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
intron-intron	ENST00000468956	ENST00000432542		ChiTaRS3.1			DC302335	ELK1	chrX	47509894	-	PPOX	chr1	161146355	-
3UTR-3CDS	ENST00000393784	ENST00000381638		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
3UTR-5UTR	ENST00000393784	ENST00000574474		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-3CDS	ENST00000519860	ENST00000381638		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-5UTR	ENST00000519860	ENST00000574474		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-3CDS	ENST00000523291	ENST00000381638		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-5UTR	ENST00000523291	ENST00000574474		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-3CDS	ENST00000326654	ENST00000381638		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-5UTR	ENST00000326654	ENST00000574474		ChiTaRS3.1			BF509585	ERGIC1	chr5	172378928	-	ZZEF1	chr17	3999957	+
intron-5UTR	ENST00000374079	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
intron-5UTR	ENST00000307564	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
intron-5UTR	ENST00000374088	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
intron-5UTR	ENST00000492875	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
5CDS-5UTR	ENST00000223791	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
5CDS-5UTR	ENST00000374075	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
intron-5UTR	ENST00000312033	ENST00000234590		ChiTaRS3.1			AY703046	AKNA	chr9	117098442	-	ENO1	chr1	8938730	-
intron-intron	ENST00000468334	ENST00000376056		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
intron-intron	ENST00000468334	ENST00000376058		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
intron-intron	ENST00000468334	ENST00000358526		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
intron-5UTR	ENST00000468334	ENST00000481402		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
intron-5UTR	ENST00000468334	ENST00000376064		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
3UTR-intron	ENST00000304506	ENST00000376056		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
3UTR-intron	ENST00000304506	ENST00000376058		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
3UTR-intron	ENST00000304506	ENST00000358526		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
3UTR-5UTR	ENST00000304506	ENST00000481402		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
3UTR-5UTR	ENST00000304506	ENST00000376064		ChiTaRS3.1			AF072756	IL13	chr5	131996477	+	AKAP4	chrX	49965004	-
5CDS-intron	ENST00000360839	ENST00000448494		ChiTaRS3.1			AW379310	ANKHD1	chr5	139892985	+	LINC00342	chr2	96485525	-
5CDS-intron	ENST00000297183	ENST00000448494		ChiTaRS3.1			AW379310	ANKHD1	chr5	139892985	+	LINC00342	chr2	96485525	-
intron-intron	ENST00000394723	ENST00000448494		ChiTaRS3.1			AW379310	ANKHD1	chr5	139892985	+	LINC00342	chr2	96485525	-
intron-intron	ENST00000394722	ENST00000448494		ChiTaRS3.1			AW379310	ANKHD1	chr5	139892985	+	LINC00342	chr2	96485525	-
intron-intron	ENST00000462121	ENST00000448494		ChiTaRS3.1			AW379310	ANKHD1	chr5	139892985	+	LINC00342	chr2	96485525	-
intron-intron	ENST00000544120	ENST00000448494		ChiTaRS3.1			AW379310	ANKHD1	chr5	139892985	+	LINC00342	chr2	96485525	-
intron-3CDS	ENST00000291572	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000291572	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000291572	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000398061	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398061	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398061	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000327505	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000327505	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000327505	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000398063	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398063	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398063	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
5UTR-3CDS	ENST00000398058	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
5UTR-intron	ENST00000398058	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
5UTR-intron	ENST00000398058	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000546158	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000546158	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000546158	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000479117	ENST00000368081		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000479117	ENST00000418334		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000479117	ENST00000470705		ChiTaRS3.1			AK125812	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000441864	ENST00000326764		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000441864	ENST00000376514		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246785	ENST00000326764		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246785	ENST00000376514		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246784	ENST00000326764		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000246784	ENST00000376514		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000594793	ENST00000326764		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-intron	ENST00000594793	ENST00000376514		ChiTaRS3.1			AI950048	BCL2L12	chr19	50176955	-	LENG8	chr19	54969701	-
intron-3UTR	ENST00000263233	ENST00000442283		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000318218		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000522463		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000521420		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000347377		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000377576		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000541131		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000435847		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-intron	ENST00000263233	ENST00000520960		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000442283		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000318218		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000522463		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000521420		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000347377		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000377576		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000541131		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000435847		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-intron	ENST00000538567	ENST00000520960		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000442283		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000318218		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000522463		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000521420		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000347377		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000377576		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000541131		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000435847		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-intron	ENST00000479808	ENST00000520960		ChiTaRS3.1			AW952111	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000446906		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000377072		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000307729		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000354520	ENST00000377059		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AF272376	KMT2A	chr11	118355690	+	MLLT10	chr10	21959376	+
intron-intron	ENST00000264818	ENST00000464117		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-3UTR	ENST00000264818	ENST00000362011		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-intron	ENST00000524462	ENST00000464117		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-3UTR	ENST00000524462	ENST00000362011		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-intron	ENST00000525621	ENST00000464117		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-3UTR	ENST00000525621	ENST00000362011		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-intron	ENST00000529370	ENST00000464117		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-3UTR	ENST00000529370	ENST00000362011		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-intron	ENST00000529422	ENST00000464117		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
intron-3UTR	ENST00000529422	ENST00000362011		ChiTaRS3.1			AW836330	TYK2	chr19	10464249	-	SHISA4	chr1	201861352	+
5CDS-5UTR	ENST00000447255	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000447255	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000447255	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000447255	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000291890	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000291890	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000291890	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000291890	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000598576	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000598576	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000598576	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000598576	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000594765	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000594765	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000594765	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000594765	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000350790	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000350790	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000350790	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000350790	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000338835	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000338835	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000338835	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000338835	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000357397	ENST00000397269		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-5UTR	ENST00000357397	ENST00000362091		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000357397	ENST00000470089		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
5CDS-intron	ENST00000357397	ENST00000379999		ChiTaRS3.1			AK309053	NCR1	chr19	55421430	+	FBXO18	chr10	5944982	+
intron-3UTR	ENST00000373023	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-3UTR	ENST00000373026	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-3UTR	ENST00000373024	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-3UTR	ENST00000373021	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-3UTR	ENST00000373027	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-3UTR	ENST00000458109	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-3UTR	ENST00000467066	ENST00000259467		ChiTaRS3.1			AA256218	INPP5B	chr1	38327943	-	PDCL	chr9	125581784	-
intron-intron	ENST00000395957	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395957	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395957	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395957	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000395957	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395958	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395958	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395958	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395958	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000395958	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000457309	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000457309	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000457309	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000457309	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000457309	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395956	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395956	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395956	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395956	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000395956	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000353245	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000353245	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000353245	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000353245	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000353245	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522542	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522542	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522542	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522542	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000522542	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000521309	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000521309	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000521309	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000521309	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000521309	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522819	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522819	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522819	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000522819	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000522819	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395953	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395953	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395953	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395953	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000395953	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395948	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395948	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395948	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395948	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000395948	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395951	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395951	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395951	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000395951	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000395951	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000419477	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000419477	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000419477	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000419477	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000419477	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000492736	ENST00000522532		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000492736	ENST00000276689		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000492736	ENST00000518008		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-intron	ENST00000492736	ENST00000517367		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3UTR	ENST00000492736	ENST00000517830		ChiTaRS3.1			BG284443	YWHAZ	chr8	101936487	-	NDUFB9	chr8	125562047	+
intron-3CDS	ENST00000546088	ENST00000451813		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
intron-3CDS	ENST00000546088	ENST00000252015		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
intron-intron	ENST00000546088	ENST00000539834		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
intron-intron	ENST00000546088	ENST00000432634		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
5UTR-3CDS	ENST00000448108	ENST00000451813		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
5UTR-3CDS	ENST00000448108	ENST00000252015		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
5UTR-intron	ENST00000448108	ENST00000539834		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
5UTR-intron	ENST00000448108	ENST00000432634		ChiTaRS3.1			DA177489	TAF1D	chr11	93474487	-	TRPC4AP	chr20	33609137	-
5CDS-3UTR	ENST00000256509	ENST00000588577		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-3UTR	ENST00000256509	ENST00000269466		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-intron	ENST00000256509	ENST00000591429		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-intron	ENST00000256509	ENST00000586966		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-3UTR	ENST00000397491	ENST00000588577		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-3UTR	ENST00000397491	ENST00000269466		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-intron	ENST00000397491	ENST00000591429		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
5CDS-intron	ENST00000397491	ENST00000586966		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
intron-3UTR	ENST00000489224	ENST00000588577		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
intron-3UTR	ENST00000489224	ENST00000269466		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
intron-intron	ENST00000489224	ENST00000591429		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
intron-intron	ENST00000489224	ENST00000586966		ChiTaRS3.1			DA092511	CHL1	chr3	443372	+	ELAC1	chr18	48513103	+
intron-3UTR	ENST00000397707	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397707	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000397707	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397707	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560611	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560611	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560611	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560611	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000354181	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000354181	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000354181	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000354181	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000458406	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000458406	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000458406	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000458406	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000397702	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397702	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000397702	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397702	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000290209	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000290209	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000290209	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000290209	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558667	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558667	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558667	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558667	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558589	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558589	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558589	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558589	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000451844	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000451844	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000451844	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000451844	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560164	ENST00000358204		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560164	ENST00000537767		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560164	ENST00000393481		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560164	ENST00000485009		ChiTaRS3.1			AA036910	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3CDS	ENST00000394906	ENST00000268171		ChiTaRS3.1			CK822851	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000394908	ENST00000268171		ChiTaRS3.1			CK822851	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000585169	ENST00000268171		ChiTaRS3.1			CK822851	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000577789	ENST00000268171		ChiTaRS3.1			CK822851	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000499499	ENST00000541515		ChiTaRS3.1			DW434843	DNAJC3-AS1	chr13	96325550	-	LUC7L2	chr7	139092035	+
intron-intron	ENST00000418265	ENST00000339594		ChiTaRS3.1			BF589754	ISY1-RAB43	chr3	128848249	+	BAZ1B	chr7	72908708	+
intron-intron	ENST00000418265	ENST00000404251		ChiTaRS3.1			BF589754	ISY1-RAB43	chr3	128848249	+	BAZ1B	chr7	72908708	+
intron-3UTR	ENST00000390548	ENST00000315579		ChiTaRS3.1			BC033148	IGHG1	chr22	22662644	+	NCAPD2	chr12	6640876	+
intron-intron	ENST00000390548	ENST00000545962		ChiTaRS3.1			BC033148	IGHG1	chr22	22662644	+	NCAPD2	chr12	6640876	+
intron-intron	ENST00000390548	ENST00000542492		ChiTaRS3.1			BC033148	IGHG1	chr22	22662644	+	NCAPD2	chr12	6640876	+
intron-3CDS	ENST00000402510	ENST00000378526		ChiTaRS3.1			BF091674	KIAA1210	chrX	118214900	-	LIG3	chr17	33324802	+
intron-3CDS	ENST00000402510	ENST00000262327		ChiTaRS3.1			BF091674	KIAA1210	chrX	118214900	-	LIG3	chr17	33324802	+
intron-intron	ENST00000402510	ENST00000586407		ChiTaRS3.1			BF091674	KIAA1210	chrX	118214900	-	LIG3	chr17	33324802	+
Frame-shit	ENST00000225298	ENST00000532636		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000225298	ENST00000533540		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000225298	ENST00000453788		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000225298	ENST00000534624		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000225298	ENST00000227378		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000225298	ENST00000534319		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000225298	ENST00000526110		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
5CDS-5UTR	ENST00000225298	ENST00000526862		ChiTaRS3.1			BP357681	UTP18	chr17	49340686	+	HSPA8	chr11	122930472	-
Frame-shit	ENST00000374531	ENST00000286548		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
5CDS-intron	ENST00000374531	ENST00000397476		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
Frame-shit	ENST00000448454	ENST00000286548		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
5CDS-intron	ENST00000448454	ENST00000397476		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
Frame-shit	ENST00000483909	ENST00000286548		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
5CDS-intron	ENST00000483909	ENST00000397476		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
Frame-shit	ENST00000314527	ENST00000286548		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
5CDS-intron	ENST00000314527	ENST00000397476		ChiTaRS3.1			DB494590	PALM2	chr9	112642962	+	GNAQ	chr9	80537263	-
5CDS-5UTR	ENST00000296684	ENST00000341307		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-5UTR	ENST00000296684	ENST00000356000		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-3UTR	ENST00000296684	ENST00000538995		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-5UTR	ENST00000296684	ENST00000377819		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-5UTR	ENST00000296684	ENST00000339997		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-5UTR	ENST00000296684	ENST00000540798		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-5UTR	ENST00000296684	ENST00000537981		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
5CDS-intron	ENST00000296684	ENST00000354497		ChiTaRS3.1			DA290461	NDUFS4	chr5	52899340	+	RTN3	chr11	63448972	+
intron-intron	ENST00000343267	ENST00000005260		ChiTaRS3.1			BI042840	APOD	chr3	195295922	-	BAIAP2L1	chr7	97934810	-
intron-intron	ENST00000343267	ENST00000462558		ChiTaRS3.1			BI042840	APOD	chr3	195295922	-	BAIAP2L1	chr7	97934810	-
intron-intron	ENST00000404479	ENST00000500890		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000404479	ENST00000507827		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-3UTR	ENST00000404479	ENST00000336356		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000318709	ENST00000500890		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000318709	ENST00000507827		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-3UTR	ENST00000318709	ENST00000336356		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000459629	ENST00000500890		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000459629	ENST00000507827		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-3UTR	ENST00000459629	ENST00000336356		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000409301	ENST00000500890		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-intron	ENST00000409301	ENST00000507827		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
intron-3UTR	ENST00000409301	ENST00000336356		ChiTaRS3.1			BX093249	AVL9	chr7	32800442	+	LRAT	chr4	155672877	+
3UTR-3UTR	ENST00000331222	ENST00000592782		ChiTaRS3.1			CX755976	CLN8	chr8	1729252	+	NMT1	chr17	43183177	+
3UTR-3UTR	ENST00000331222	ENST00000258960		ChiTaRS3.1			CX755976	CLN8	chr8	1729252	+	NMT1	chr17	43183177	+
3UTR-intron	ENST00000331222	ENST00000590114		ChiTaRS3.1			CX755976	CLN8	chr8	1729252	+	NMT1	chr17	43183177	+
intron-3UTR	ENST00000523237	ENST00000592782		ChiTaRS3.1			CX755976	CLN8	chr8	1729252	+	NMT1	chr17	43183177	+
intron-3UTR	ENST00000523237	ENST00000258960		ChiTaRS3.1			CX755976	CLN8	chr8	1729252	+	NMT1	chr17	43183177	+
intron-intron	ENST00000523237	ENST00000590114		ChiTaRS3.1			CX755976	CLN8	chr8	1729252	+	NMT1	chr17	43183177	+
3UTR-3UTR	ENST00000263116	ENST00000233143		ChiTaRS3.1			BC017436	RAB36	chr22	23505803	+	TMSB10	chr2	85133699	+
intron-3UTR	ENST00000341989	ENST00000233143		ChiTaRS3.1			BC017436	RAB36	chr22	23505803	+	TMSB10	chr2	85133699	+
intron-3CDS	ENST00000396024	ENST00000337147		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000396024	ENST00000367075		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000396024	ENST00000392177		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-intron	ENST00000396024	ENST00000476189		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000451270	ENST00000337147		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000451270	ENST00000367075		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000451270	ENST00000392177		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-intron	ENST00000451270	ENST00000476189		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000332680	ENST00000337147		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000332680	ENST00000367075		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000332680	ENST00000392177		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-intron	ENST00000332680	ENST00000476189		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000421017	ENST00000337147		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000421017	ENST00000367075		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000421017	ENST00000392177		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-intron	ENST00000421017	ENST00000476189		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000557937	ENST00000337147		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000557937	ENST00000367075		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000557937	ENST00000392177		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-intron	ENST00000557937	ENST00000476189		ChiTaRS3.1			AW444560	ANXA2	chr15	60654431	+	EZR	chr6	159188506	+
intron-3CDS	ENST00000549920	ENST00000261597		ChiTaRS3.1			BQ776047	RPL18	chr19	49118684	+	NDC80	chr18	2606477	-
intron-3CDS	ENST00000550645	ENST00000261597		ChiTaRS3.1			BQ776047	RPL18	chr19	49118684	+	NDC80	chr18	2606477	-
intron-3CDS	ENST00000552588	ENST00000261597		ChiTaRS3.1			BQ776047	RPL18	chr19	49118684	+	NDC80	chr18	2606477	-
intron-3CDS	ENST00000549273	ENST00000261597		ChiTaRS3.1			BQ776047	RPL18	chr19	49118684	+	NDC80	chr18	2606477	-
intron-3CDS	ENST00000332149	ENST00000430479		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000399357		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000420159		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000343495		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000242066		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000405192		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000405358		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000403527		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000405218		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000332149	ENST00000403685		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-5UTR	ENST00000332149	ENST00000476720		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-3CDS	ENST00000398585	ENST00000430479		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000399357		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000420159		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000343495		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000242066		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000405192		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000405358		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000403527		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000405218		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000398585	ENST00000403685		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-5UTR	ENST00000398585	ENST00000476720		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-3CDS	ENST00000458356	ENST00000430479		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000399357		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000420159		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000343495		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000242066		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000405192		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000405358		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000403527		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000405218		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000458356	ENST00000403685		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-5UTR	ENST00000458356	ENST00000476720		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-3CDS	ENST00000497881	ENST00000430479		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000399357		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000420159		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000343495		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000242066		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000405192		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000405358		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000403527		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000405218		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-intron	ENST00000497881	ENST00000403685		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
intron-5UTR	ENST00000497881	ENST00000476720		ChiTaRS3.1			EU090249	TMPRSS2	chr21	42866302	-	ETV1	chr7	13975469	-
3UTR-intron	ENST00000534336	ENST00000354190		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
3UTR-intron	ENST00000534336	ENST00000398492		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
3UTR-intron	ENST00000534336	ENST00000227214		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
3UTR-intron	ENST00000534336	ENST00000398494		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
3UTR-intron	ENST00000534336	ENST00000543085		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
3UTR-intron	ENST00000534336	ENST00000544532		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
3UTR-5UTR	ENST00000534336	ENST00000535129		ChiTaRS3.1			DC328276	MALAT1	chr11	65272578	+	PLEKHB1	chr11	73359991	+
intron-intron	ENST00000373644	ENST00000534358		ChiTaRS3.1			FM165188	TET1	chr10	70440903	+	KMT2A	chr11	118355470	+
intron-intron	ENST00000373644	ENST00000389506		ChiTaRS3.1			FM165188	TET1	chr10	70440903	+	KMT2A	chr11	118355470	+
intron-intron	ENST00000373644	ENST00000354520		ChiTaRS3.1			FM165188	TET1	chr10	70440903	+	KMT2A	chr11	118355470	+
intron-intron	ENST00000373644	ENST00000420751		ChiTaRS3.1			FM165188	TET1	chr10	70440903	+	KMT2A	chr11	118355470	+
5UTR-5UTR	ENST00000263360	ENST00000373795		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
5UTR-5UTR	ENST00000263360	ENST00000546138		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
5UTR-5UTR	ENST00000263360	ENST00000466448		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
5UTR-5UTR	ENST00000528180	ENST00000373795		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
5UTR-5UTR	ENST00000528180	ENST00000546138		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
5UTR-5UTR	ENST00000528180	ENST00000466448		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000327320	ENST00000373795		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000327320	ENST00000546138		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000327320	ENST00000466448		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000351625	ENST00000373795		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000351625	ENST00000546138		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000351625	ENST00000466448		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000527888	ENST00000373795		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000527888	ENST00000546138		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-5UTR	ENST00000527888	ENST00000466448		ChiTaRS3.1			DA789139	EED	chr11	85955994	+	SRSF4	chr1	29508343	-
intron-3CDS	ENST00000266771	ENST00000261609		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-intron	ENST00000266771	ENST00000563945		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-3CDS	ENST00000545031	ENST00000261609		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-intron	ENST00000545031	ENST00000563945		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-3CDS	ENST00000544112	ENST00000261609		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-intron	ENST00000544112	ENST00000563945		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-3CDS	ENST00000539703	ENST00000261609		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
intron-intron	ENST00000539703	ENST00000563945		ChiTaRS3.1			BF922900	SLC15A4	chr12	129303056	-	HERC2	chr15	28389865	-
5UTR-3CDS	ENST00000357436	ENST00000326912		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000357436	ENST00000326925		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000357436	ENST00000395458		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000357436	ENST00000451378		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000336738	ENST00000326912		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000336738	ENST00000326925		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000336738	ENST00000395458		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000336738	ENST00000451378		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000442465	ENST00000326912		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000442465	ENST00000326925		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000442465	ENST00000395458		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5UTR-3CDS	ENST00000442465	ENST00000451378		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000495174	ENST00000326912		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000495174	ENST00000326925		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000495174	ENST00000395458		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000495174	ENST00000451378		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000599616	ENST00000326912		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000599616	ENST00000326925		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000599616	ENST00000395458		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
intron-3CDS	ENST00000599616	ENST00000451378		ChiTaRS3.1			BM549339	SH3BP1	chr22	38035742	+	NDUFAF3	chr3	49059939	+
5CDS-5UTR	ENST00000340622	ENST00000526627		ChiTaRS3.1			BU655959	ZNF746	chr7	149194604	-	SMIM3	chr5	150174991	+
5CDS-5UTR	ENST00000458143	ENST00000526627		ChiTaRS3.1			BU655959	ZNF746	chr7	149194604	-	SMIM3	chr5	150174991	+
5CDS-5UTR	ENST00000461958	ENST00000526627		ChiTaRS3.1			BU655959	ZNF746	chr7	149194604	-	SMIM3	chr5	150174991	+
intron-3CDS	ENST00000263233	ENST00000378482		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000263233	ENST00000422612		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000263233	ENST00000545599		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000263233	ENST00000286824		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3UTR	ENST00000263233	ENST00000488893		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000378482		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000422612		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000545599		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000538567	ENST00000286824		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3UTR	ENST00000538567	ENST00000488893		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000378482		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000422612		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000545599		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000479808	ENST00000286824		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3UTR	ENST00000479808	ENST00000488893		ChiTaRS3.1			BI602014	SYP	chrX	49054224	-	TSPAN7	chrX	38525384	+
intron-3CDS	ENST00000609129	ENST00000504376		ChiTaRS3.1			DA718170	ZBTB8B	chr1	33019141	+	CDH12	chr5	21802532	-
intron-3CDS	ENST00000609129	ENST00000382254		ChiTaRS3.1			DA718170	ZBTB8B	chr1	33019141	+	CDH12	chr5	21802532	-
intron-3CDS	ENST00000609129	ENST00000522262		ChiTaRS3.1			DA718170	ZBTB8B	chr1	33019141	+	CDH12	chr5	21802532	-
intron-5UTR	ENST00000609129	ENST00000521384		ChiTaRS3.1			DA718170	ZBTB8B	chr1	33019141	+	CDH12	chr5	21802532	-
In-frame	ENST00000509018	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000509018	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000509018	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000509018	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
5CDS-5UTR	ENST00000509018	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000307984	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000307984	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000307984	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000307984	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
5CDS-5UTR	ENST00000307984	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000507093	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000507093	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000507093	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000507093	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
5CDS-5UTR	ENST00000507093	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000296859	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000296859	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000296859	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000296859	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
5CDS-5UTR	ENST00000296859	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000512052	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000512052	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000512052	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000512052	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-5UTR	ENST00000512052	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000308008	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000308008	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000308008	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000308008	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
5CDS-5UTR	ENST00000308008	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000510071	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000510071	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000510071	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
In-frame	ENST00000510071	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
5CDS-5UTR	ENST00000510071	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000503398	ENST00000370794		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000503398	ENST00000357428		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000503398	ENST00000370793		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3CDS	ENST00000503398	ENST00000370792		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-5UTR	ENST00000503398	ENST00000528150		ChiTaRS3.1			DC370352	RAPGEF6	chr5	130897670	-	USP33	chr1	78205103	-
intron-3UTR	ENST00000372733	ENST00000376113		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000346226		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000352848		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000393041		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000348750		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000357970		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000259238		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000393040		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000351659		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000316724		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000372733	ENST00000409400		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-intron	ENST00000372733	ENST00000466111		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000376113		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000346226		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000352848		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000393041		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000348750		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000357970		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000259238		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000393040		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000351659		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000316724		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000537976	ENST00000409400		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-intron	ENST00000537976	ENST00000466111		ChiTaRS3.1			CB136042	SDC4	chr20	43954796	-	BIN1	chr2	127805682	-
intron-3UTR	ENST00000508736	ENST00000300952		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
intron-3UTR	ENST00000508736	ENST00000591446		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
5CDS-3UTR	ENST00000548825	ENST00000300952		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
5CDS-3UTR	ENST00000548825	ENST00000591446		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
5CDS-3UTR	ENST00000261897	ENST00000300952		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
5CDS-3UTR	ENST00000261897	ENST00000591446		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
5CDS-3UTR	ENST00000380281	ENST00000300952		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
5CDS-3UTR	ENST00000380281	ENST00000591446		ChiTaRS3.1			AA343865	PRPF40B	chr12	50028332	+	MIDN	chr19	1257524	+
intron-3CDS	ENST00000437291	ENST00000435706		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000437291	ENST00000264331		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000437291	ENST00000542520		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000437291	ENST00000540199		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-intron	ENST00000437291	ENST00000475717		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000292907	ENST00000435706		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000292907	ENST00000264331		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000292907	ENST00000542520		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-3CDS	ENST00000292907	ENST00000540199		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
intron-intron	ENST00000292907	ENST00000475717		ChiTaRS3.1			CB858076	COX7A1	chr19	36642599	-	TOP2B	chr3	25639883	-
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			BU944045	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5UTR-3CDS	ENST00000368301	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-3CDS	ENST00000368301	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-5UTR	ENST00000368301	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-intron	ENST00000368301	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
5UTR-intron	ENST00000368301	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000361308	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000361308	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000361308	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000361308	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000361308	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000347559	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000347559	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000347559	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000347559	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000347559	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368300	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368300	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000368300	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368300	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368300	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368299	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368299	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000368299	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368299	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368299	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000448611	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000448611	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000448611	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000448611	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000448611	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368297	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000368297	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000368297	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368297	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000368297	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000473598	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000473598	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000473598	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000473598	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000473598	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000392353	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000392353	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000392353	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000392353	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000392353	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000496738	ENST00000289104		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-3CDS	ENST00000496738	ENST00000423968		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-5UTR	ENST00000496738	ENST00000464896		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000496738	ENST00000461114		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000496738	ENST00000474559		ChiTaRS3.1			DA808737	LMNA	chr1	156052975	+	MRAS	chr3	138116164	+
intron-intron	ENST00000052754	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000052754	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000052754	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000052754	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000052754	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000425043	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000425043	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000425043	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000425043	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000425043	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000393155	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000393155	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000393155	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000393155	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000393155	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000228329	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000228329	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000228329	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000228329	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000228329	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000303320	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000303320	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000303320	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000303320	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000303320	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000552962	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000552962	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000552962	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000552962	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000552962	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000441303	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000441303	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000441303	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000441303	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000441303	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000420120	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000420120	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000420120	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000420120	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000420120	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000547568	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000547568	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000547568	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000547568	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000547568	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000456569	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000456569	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000456569	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000456569	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000456569	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546370	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546370	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000546370	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546370	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546370	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546745	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546745	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000546745	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546745	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000546745	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000550099	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000550099	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000550099	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000550099	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000550099	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000551354	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000551354	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000551354	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000551354	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000551354	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000548768	ENST00000573951		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000548768	ENST00000538765		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-3UTR	ENST00000548768	ENST00000219069		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000548768	ENST00000573578		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-intron	ENST00000548768	ENST00000574253		ChiTaRS3.1			BM720639	DCN	chr12	91552132	-	ZNF263	chr16	3341286	+
intron-5UTR	ENST00000366667	ENST00000275428		ChiTaRS3.1			BP347159	AGT	chr1	230846101	-	GGCT	chr7	30544372	-
intron-5UTR	ENST00000366667	ENST00000005374		ChiTaRS3.1			BP347159	AGT	chr1	230846101	-	GGCT	chr7	30544372	-
intron-5UTR	ENST00000366667	ENST00000409144		ChiTaRS3.1			BP347159	AGT	chr1	230846101	-	GGCT	chr7	30544372	-
intron-5UTR	ENST00000366667	ENST00000409390		ChiTaRS3.1			BP347159	AGT	chr1	230846101	-	GGCT	chr7	30544372	-
intron-intron	ENST00000366667	ENST00000598361		ChiTaRS3.1			BP347159	AGT	chr1	230846101	-	GGCT	chr7	30544372	-
intron-5UTR	ENST00000366667	ENST00000409436		ChiTaRS3.1			BP347159	AGT	chr1	230846101	-	GGCT	chr7	30544372	-
Frame-shit	ENST00000367866	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
Frame-shit	ENST00000367866	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5CDS-5UTR	ENST00000367866	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000452019	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000452019	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-5UTR	ENST00000452019	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
Frame-shit	ENST00000429375	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
Frame-shit	ENST00000429375	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5CDS-5UTR	ENST00000429375	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
3UTR-3CDS	ENST00000367865	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
3UTR-3CDS	ENST00000367865	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
3UTR-5UTR	ENST00000367865	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000541643	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000541643	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-5UTR	ENST00000541643	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000420254	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000420254	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-5UTR	ENST00000420254	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
intron-3CDS	ENST00000367862	ENST00000392894		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
intron-3CDS	ENST00000367862	ENST00000344229		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
intron-5UTR	ENST00000367862	ENST00000361785		ChiTaRS3.1			DA348770	POU2F1	chr1	167190197	+	RNF13	chr3	149613256	+
5UTR-3CDS	ENST00000543273	ENST00000394456		ChiTaRS3.1			DA128910	GATS	chr7	99821192	-	GTF2F1	chr19	6389649	-
5UTR-3CDS	ENST00000543273	ENST00000429701		ChiTaRS3.1			DA128910	GATS	chr7	99821192	-	GTF2F1	chr19	6389649	-
3UTR-3CDS	ENST00000436886	ENST00000394456		ChiTaRS3.1			DA128910	GATS	chr7	99821192	-	GTF2F1	chr19	6389649	-
3UTR-3CDS	ENST00000436886	ENST00000429701		ChiTaRS3.1			DA128910	GATS	chr7	99821192	-	GTF2F1	chr19	6389649	-
5CDS-5UTR	ENST00000396373	ENST00000379249		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000379264		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000379272		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000379255		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000296869		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000379246		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000379244		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000544770		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000543479		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000477640		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-intron	ENST00000396373	ENST00000357096		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000379240		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
5CDS-5UTR	ENST00000396373	ENST00000431707		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379249		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379264		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379272		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379255		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000296869		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379246		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379244		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000544770		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000543479		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000477640		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-intron	ENST00000544715	ENST00000357096		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000379240		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
3UTR-5UTR	ENST00000544715	ENST00000431707		ChiTaRS3.1			AF102845	ETV6	chr12	11803094	+	ACSL6	chr5	131329946	-
Frame-shit	ENST00000373913	ENST00000535577		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373913	ENST00000426488		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000373913	ENST00000538906		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000373913	ENST00000394983		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373913	ENST00000300849		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373913	ENST00000539836		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000373913	ENST00000417110		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
5CDS-intron	ENST00000373913	ENST00000564456		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000401952	ENST00000535577		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000401952	ENST00000426488		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000401952	ENST00000538906		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000401952	ENST00000394983		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000401952	ENST00000300849		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000401952	ENST00000539836		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000401952	ENST00000417110		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
5CDS-intron	ENST00000401952	ENST00000564456		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373907	ENST00000535577		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373907	ENST00000426488		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000373907	ENST00000538906		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000373907	ENST00000394983		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373907	ENST00000300849		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000373907	ENST00000539836		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000373907	ENST00000417110		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
5CDS-intron	ENST00000373907	ENST00000564456		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000339266	ENST00000535577		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000339266	ENST00000426488		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000339266	ENST00000538906		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000339266	ENST00000394983		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000339266	ENST00000300849		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000339266	ENST00000539836		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000339266	ENST00000417110		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
5CDS-intron	ENST00000339266	ENST00000564456		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000535577		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000426488		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000538906		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000394983		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000300849		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000539836		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-3CDS	ENST00000475894	ENST00000417110		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
3UTR-intron	ENST00000475894	ENST00000564456		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000340491	ENST00000535577		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000340491	ENST00000426488		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000340491	ENST00000538906		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000340491	ENST00000394983		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000340491	ENST00000300849		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
Frame-shit	ENST00000340491	ENST00000539836		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
In-frame	ENST00000340491	ENST00000417110		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
5CDS-intron	ENST00000340491	ENST00000564456		ChiTaRS3.1			DA524473	DLGAP4	chr20	35125171	+	ZNF668	chr16	31073323	-
intron-3UTR	ENST00000216297	ENST00000359543		ChiTaRS3.1			BF088410	SUPT16H	chr14	21821946	-	EMP2	chr16	10623482	-
intron-5UTR	ENST00000216297	ENST00000566033		ChiTaRS3.1			BF088410	SUPT16H	chr14	21821946	-	EMP2	chr16	10623482	-
intron-intron	ENST00000216297	ENST00000536829		ChiTaRS3.1			BF088410	SUPT16H	chr14	21821946	-	EMP2	chr16	10623482	-
intron-3UTR	ENST00000555943	ENST00000359543		ChiTaRS3.1			BF088410	SUPT16H	chr14	21821946	-	EMP2	chr16	10623482	-
intron-5UTR	ENST00000555943	ENST00000566033		ChiTaRS3.1			BF088410	SUPT16H	chr14	21821946	-	EMP2	chr16	10623482	-
intron-intron	ENST00000555943	ENST00000536829		ChiTaRS3.1			BF088410	SUPT16H	chr14	21821946	-	EMP2	chr16	10623482	-
intron-3UTR	ENST00000508628	ENST00000299427		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000508628	ENST00000533371		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000508628	ENST00000534644		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000508628	ENST00000528657		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000456466	ENST00000299427		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000456466	ENST00000533371		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000456466	ENST00000534644		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000456466	ENST00000528657		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000582970	ENST00000299427		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000582970	ENST00000533371		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000582970	ENST00000534644		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000582970	ENST00000528657		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000319921	ENST00000299427		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000319921	ENST00000533371		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000319921	ENST00000534644		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000319921	ENST00000528657		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000336301	ENST00000299427		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000336301	ENST00000533371		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000336301	ENST00000534644		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000336301	ENST00000528657		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000427003	ENST00000299427		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000427003	ENST00000533371		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000427003	ENST00000534644		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000427003	ENST00000528657		ChiTaRS3.1			BI024546	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
5UTR-3CDS	ENST00000356406	ENST00000373913		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000356406	ENST00000401952		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000356406	ENST00000373907		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000356406	ENST00000339266		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3UTR	ENST00000356406	ENST00000475894		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3UTR	ENST00000356406	ENST00000340491		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000413009	ENST00000373913		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000413009	ENST00000401952		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000413009	ENST00000373907		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3CDS	ENST00000413009	ENST00000339266		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3UTR	ENST00000413009	ENST00000475894		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
5UTR-3UTR	ENST00000413009	ENST00000340491		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000503233	ENST00000373913		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000503233	ENST00000401952		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000503233	ENST00000373907		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000503233	ENST00000339266		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3UTR	ENST00000503233	ENST00000475894		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3UTR	ENST00000503233	ENST00000340491		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000515797	ENST00000373913		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000515797	ENST00000401952		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000515797	ENST00000373907		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3CDS	ENST00000515797	ENST00000339266		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3UTR	ENST00000515797	ENST00000475894		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3UTR	ENST00000515797	ENST00000340491		ChiTaRS3.1			BI915466	ACOX3	chr4	8442373	-	DLGAP4	chr20	35125107	+
intron-3UTR	ENST00000495013	ENST00000511685		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000495013	ENST00000406950		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000495013	ENST00000502950		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-3UTR	ENST00000258648	ENST00000511685		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000258648	ENST00000406950		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000258648	ENST00000502950		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-3UTR	ENST00000378586	ENST00000511685		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000378586	ENST00000406950		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000378586	ENST00000502950		ChiTaRS3.1			BQ774587	MED4	chr13	48650783	+	TENM3	chr4	183722647	-
intron-intron	ENST00000512055	ENST00000286301		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000512055	ENST00000515239		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000512055	ENST00000543093		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000429747	ENST00000286301		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000429747	ENST00000515239		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000429747	ENST00000543093		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000512332	ENST00000286301		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000512332	ENST00000515239		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000512332	ENST00000543093		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000511604	ENST00000286301		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000511604	ENST00000515239		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000511604	ENST00000543093		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000502818	ENST00000286301		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000502818	ENST00000515239		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000502818	ENST00000543093		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000503204	ENST00000286301		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000503204	ENST00000515239		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
intron-intron	ENST00000503204	ENST00000543093		ChiTaRS3.1			AA580838	CPNE4	chr3	131962374	-	CSF1R	chr5	149474315	+
5CDS-3UTR	ENST00000216492	ENST00000458501		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
5CDS-3UTR	ENST00000216492	ENST00000379644		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
5CDS-intron	ENST00000216492	ENST00000297798		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
5CDS-intron	ENST00000216492	ENST00000521576		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
intron-3UTR	ENST00000334654	ENST00000458501		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
intron-3UTR	ENST00000334654	ENST00000379644		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
intron-intron	ENST00000334654	ENST00000297798		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
intron-intron	ENST00000334654	ENST00000521576		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
3UTR-3UTR	ENST00000553866	ENST00000458501		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
3UTR-3UTR	ENST00000553866	ENST00000379644		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
3UTR-intron	ENST00000553866	ENST00000297798		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
3UTR-intron	ENST00000553866	ENST00000521576		ChiTaRS3.1			W23477	CHGA	chr14	93397747	+	HGSNAT	chr8	43056078	+
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			AA731479	CD74	chr5	149781474	+	CD74	chr5	149781536	-
intron-intron	ENST00000356493	ENST00000473656		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000356493	ENST00000370228		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000356493	ENST00000311916		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000452248	ENST00000473656		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000452248	ENST00000370228		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000452248	ENST00000311916		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000487490	ENST00000473656		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000487490	ENST00000370228		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
intron-intron	ENST00000487490	ENST00000311916		ChiTaRS3.1			BP230714	STOML2	chr9	35100118	-	C10orf2	chr10	102747512	+
3UTR-3UTR	ENST00000381440	ENST00000261590		ChiTaRS3.1			BC071764	ITPRIPL2	chr16	19131631	+	DSG2	chr18	29127527	+
3UTR-intron	ENST00000381440	ENST00000585206		ChiTaRS3.1			BC071764	ITPRIPL2	chr16	19131631	+	DSG2	chr18	29127527	+
Frame-shit	ENST00000535539	ENST00000397843		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000535539	ENST00000356641		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000535539	ENST00000532993		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000378438	ENST00000397843		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000378438	ENST00000356641		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000378438	ENST00000532993		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
intron-3CDS	ENST00000544975	ENST00000397843		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
intron-3CDS	ENST00000544975	ENST00000356641		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
intron-3CDS	ENST00000544975	ENST00000532993		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
intron-3CDS	ENST00000486558	ENST00000397843		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
intron-3CDS	ENST00000486558	ENST00000356641		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
intron-3CDS	ENST00000486558	ENST00000532993		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000535777	ENST00000397843		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000535777	ENST00000356641		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000535777	ENST00000532993		ChiTaRS3.1			AI823740	ATP6AP2	chrX	40448332	+	ARHGEF12	chr11	120347400	+
Frame-shit	ENST00000382878	ENST00000341724		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000382878	ENST00000372004		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000382878	ENST00000371998		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000382878	ENST00000371997		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
5CDS-intron	ENST00000382878	ENST00000497292		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409248	ENST00000341724		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409248	ENST00000372004		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409248	ENST00000371998		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409248	ENST00000371997		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
5CDS-intron	ENST00000409248	ENST00000497292		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409860	ENST00000341724		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409860	ENST00000372004		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409860	ENST00000371998		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
Frame-shit	ENST00000409860	ENST00000371997		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
5CDS-intron	ENST00000409860	ENST00000497292		ChiTaRS3.1			BQ009202	C4orf48	chr4	2044137	-	NCOA3	chr20	46279816	-
intron-3CDS	ENST00000372583	ENST00000588750		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372583	ENST00000588802		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372583	ENST00000252491		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372583	ENST00000592885		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000372583	ENST00000589781		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000372583	ENST00000586638		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372584	ENST00000588750		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372584	ENST00000588802		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372584	ENST00000252491		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000372584	ENST00000592885		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000372584	ENST00000589781		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000372584	ENST00000586638		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000247584	ENST00000588750		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000247584	ENST00000588802		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000247584	ENST00000252491		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000247584	ENST00000592885		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000247584	ENST00000589781		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000247584	ENST00000586638		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000429157	ENST00000588750		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000429157	ENST00000588802		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000429157	ENST00000252491		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000429157	ENST00000592885		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000429157	ENST00000589781		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000429157	ENST00000586638		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000460604	ENST00000588750		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000460604	ENST00000588802		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000460604	ENST00000252491		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-3CDS	ENST00000460604	ENST00000592885		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000460604	ENST00000589781		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
intron-intron	ENST00000460604	ENST00000586638		ChiTaRS3.1			BP389649	HIVEP3	chr1	42216169	-	APOC1	chr19	45419445	+
Frame-shit	ENST00000336761	ENST00000402746		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000336761	ENST00000399654		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000336761	ENST00000406869		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000336761	ENST00000265854		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
5CDS-intron	ENST00000336761	ENST00000486340		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000402746		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000399654		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000406869		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000265854		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
5CDS-intron	ENST00000233078	ENST00000486340		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000402746		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000399654		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000406869		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000265854		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-intron	ENST00000586579	ENST00000486340		ChiTaRS3.1			CD048646	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
5CDS-intron	ENST00000298310	ENST00000421182		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000357867		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000323926		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000336916		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000354785		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000357009		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000346544		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000345488		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000359671		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000446046		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000443816		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000432072		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000356005		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000490833		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000298310	ENST00000426059		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000421182		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000357867		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000323926		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000336916		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000354785		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000357009		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000346544		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000345488		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000359671		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000446046		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000443816		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000432072		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000356005		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000490833		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000382135	ENST00000426059		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000421182		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000357867		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000323926		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000336916		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000354785		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000357009		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000346544		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000345488		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000359671		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000446046		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000443816		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000432072		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000356005		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000490833		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000545773	ENST00000426059		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000421182		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000357867		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000323926		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000336916		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000354785		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000357009		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000346544		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000345488		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000359671		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000446046		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000443816		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000432072		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000356005		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000490833		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5UTR-intron	ENST00000556925	ENST00000426059		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000421182		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000357867		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000323926		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000336916		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000354785		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000357009		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000346544		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000345488		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000359671		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000446046		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000443816		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000432072		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000356005		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000490833		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
5CDS-intron	ENST00000546046	ENST00000426059		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000421182		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000357867		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000323926		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000336916		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000354785		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000357009		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000346544		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000345488		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000359671		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000446046		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000443816		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000432072		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000356005		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000490833		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
intron-intron	ENST00000556672	ENST00000426059		ChiTaRS3.1			BC073981	NEMF	chr14	50253438	-	FN1	chr2	216292878	-
Frame-shit	ENST00000295598	ENST00000438607		ChiTaRS3.1			BG573661	ATP1A1	chr1	116943778	+	TMA7	chr3	48482001	+
Frame-shit	ENST00000537345	ENST00000438607		ChiTaRS3.1			BG573661	ATP1A1	chr1	116943778	+	TMA7	chr3	48482001	+
Frame-shit	ENST00000369496	ENST00000438607		ChiTaRS3.1			BG573661	ATP1A1	chr1	116943778	+	TMA7	chr3	48482001	+
intron-3CDS	ENST00000491156	ENST00000438607		ChiTaRS3.1			BG573661	ATP1A1	chr1	116943778	+	TMA7	chr3	48482001	+
intron-3CDS	ENST00000355832	ENST00000323666		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000355832	ENST00000546753		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000355832	ENST00000261220		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000355832	ENST00000550777		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000355832	ENST00000551840		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000542458	ENST00000323666		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000542458	ENST00000546753		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000542458	ENST00000261220		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000542458	ENST00000550777		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000542458	ENST00000551840		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000465653	ENST00000323666		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000465653	ENST00000546753		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000465653	ENST00000261220		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000465653	ENST00000550777		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000465653	ENST00000551840		ChiTaRS3.1			BM759548	ERCC6	chr10	50732337	-	METAP2	chr12	95868071	+
intron-3CDS	ENST00000550574	ENST00000296674		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-intron	ENST00000550574	ENST00000510210		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-intron	ENST00000550574	ENST00000512493		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-intron	ENST00000550574	ENST00000510019		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-3UTR	ENST00000550574	ENST00000507980		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-intron	ENST00000550574	ENST00000503605		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-intron	ENST00000550574	ENST00000511844		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
In-frame	ENST00000541364	ENST00000296674		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000541364	ENST00000510210		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000541364	ENST00000512493		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000541364	ENST00000510019		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-3UTR	ENST00000541364	ENST00000507980		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000541364	ENST00000503605		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000541364	ENST00000511844		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
In-frame	ENST00000301072	ENST00000296674		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000301072	ENST00000510210		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000301072	ENST00000512493		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000301072	ENST00000510019		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-3UTR	ENST00000301072	ENST00000507980		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000301072	ENST00000503605		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000301072	ENST00000511844		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
Frame-shit	ENST00000549183	ENST00000296674		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000549183	ENST00000510210		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000549183	ENST00000512493		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000549183	ENST00000510019		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-3UTR	ENST00000549183	ENST00000507980		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000549183	ENST00000503605		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
5CDS-intron	ENST00000549183	ENST00000511844		ChiTaRS3.1			BM785206	TUBA1C	chr12	49663672	+	RPS23	chr5	81571955	-
intron-3CDS	ENST00000403263	ENST00000367302		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367296		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000295624		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367297		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367300		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000403263	ENST00000367295		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-intron	ENST00000403263	ENST00000469130		ChiTaRS3.1			AK022631	INO80D	chr2	206859491	-	NAV1	chr1	201749654	+
intron-3CDS	ENST00000234590	ENST00000375571		ChiTaRS3.1			BG611652	ENO1	chr1	8928076	-	MAPRE1	chr20	31424542	+
5CDS-3UTR	ENST00000544840	ENST00000265981		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
5CDS-intron	ENST00000544840	ENST00000528665		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
5CDS-3UTR	ENST00000434554	ENST00000265981		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
5CDS-intron	ENST00000434554	ENST00000528665		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
5CDS-3UTR	ENST00000225573	ENST00000265981		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
5CDS-intron	ENST00000225573	ENST00000528665		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
intron-3UTR	ENST00000534893	ENST00000265981		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
intron-intron	ENST00000534893	ENST00000528665		ChiTaRS3.1			BQ218587	PNPO	chr17	46020728	+	RNF141	chr11	10535273	-
Frame-shit	ENST00000225402	ENST00000353331		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
Frame-shit	ENST00000225402	ENST00000531224		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
Frame-shit	ENST00000225402	ENST00000527536		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
Frame-shit	ENST00000225402	ENST00000530767		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
Frame-shit	ENST00000225402	ENST00000527759		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
5CDS-intron	ENST00000225402	ENST00000031135		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
5CDS-intron	ENST00000225402	ENST00000529917		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
5CDS-intron	ENST00000225402	ENST00000392348		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-3CDS	ENST00000590321	ENST00000353331		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-3CDS	ENST00000590321	ENST00000531224		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-3CDS	ENST00000590321	ENST00000527536		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-3CDS	ENST00000590321	ENST00000530767		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-3CDS	ENST00000590321	ENST00000527759		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-intron	ENST00000590321	ENST00000031135		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-intron	ENST00000590321	ENST00000529917		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
intron-intron	ENST00000590321	ENST00000392348		ChiTaRS3.1			BE866034	AATF	chr17	35310426	+	BCLAF1	chr6	136599787	-
5CDS-3UTR	ENST00000417172	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000417172	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000361388	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000361388	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000422748	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000422748	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000361675	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000361675	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000361901	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000361901	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000393118	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000393118	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000495522	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000495522	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000424922	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000424922	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-3UTR	ENST00000543443	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
5CDS-intron	ENST00000543443	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
intron-3UTR	ENST00000466704	ENST00000513458		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
intron-intron	ENST00000466704	ENST00000506252		ChiTaRS3.1			AW841250	CALD1	chr7	134618086	+	SREK1IP1	chr5	64016901	-
intron-3CDS	ENST00000397887	ENST00000308317		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397887	ENST00000396249		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397887	ENST00000250379		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000330938	ENST00000308317		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000330938	ENST00000396249		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000330938	ENST00000250379		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000445724	ENST00000308317		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000445724	ENST00000396249		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000445724	ENST00000250379		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397886	ENST00000308317		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397886	ENST00000396249		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000397886	ENST00000250379		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000494690	ENST00000308317		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000494690	ENST00000396249		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000494690	ENST00000250379		ChiTaRS3.1			BF804049	PTTG1IP	chr21	46270964	-	GEMIN2	chr14	39591695	+
intron-3CDS	ENST00000373367	ENST00000545182		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000373367	ENST00000280800		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-intron	ENST00000373367	ENST00000547163		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000541184	ENST00000545182		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000541184	ENST00000280800		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-intron	ENST00000541184	ENST00000547163		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000373361	ENST00000545182		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000373361	ENST00000280800		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-intron	ENST00000373361	ENST00000547163		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000482827	ENST00000545182		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-3CDS	ENST00000482827	ENST00000280800		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
intron-intron	ENST00000482827	ENST00000547163		ChiTaRS3.1			CA446824	ZDHHC15	chrX	74621013	-	PLBD2	chr12	113826428	-
5CDS-3UTR	ENST00000379516	ENST00000371711		ChiTaRS3.1			CN280929	SNX2	chr5	122131078	+	B4GALT5	chr20	48249756	-
5UTR-3UTR	ENST00000514949	ENST00000371711		ChiTaRS3.1			CN280929	SNX2	chr5	122131078	+	B4GALT5	chr20	48249756	-
intron-3UTR	ENST00000510372	ENST00000371711		ChiTaRS3.1			CN280929	SNX2	chr5	122131078	+	B4GALT5	chr20	48249756	-
intron-3CDS	ENST00000422163	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000422163	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000422163	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000422163	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-5UTR	ENST00000422163	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000491100	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000491100	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000491100	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000491100	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-5UTR	ENST00000491100	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
In-frame	ENST00000313601	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
In-frame	ENST00000313601	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
In-frame	ENST00000313601	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
In-frame	ENST00000313601	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
5CDS-5UTR	ENST00000313601	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
5UTR-3CDS	ENST00000536647	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
5UTR-3CDS	ENST00000536647	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
5UTR-3CDS	ENST00000536647	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
5UTR-3CDS	ENST00000536647	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
5UTR-5UTR	ENST00000536647	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000440628	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000440628	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000440628	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000440628	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-5UTR	ENST00000440628	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000451956	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000451956	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000451956	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000451956	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-5UTR	ENST00000451956	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000266027	ENST00000307092		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000266027	ENST00000307076		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000266027	ENST00000422318		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-3CDS	ENST00000266027	ENST00000459839		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-5UTR	ENST00000266027	ENST00000490681		ChiTaRS3.1			BY797642	GNAI2	chr3	50273885	+	NT5DC2	chr3	52563351	-
intron-5UTR	ENST00000555245	ENST00000304593		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-3UTR	ENST00000555245	ENST00000476924		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000353339		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000354503		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000409565		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000409616		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000337110		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000524634		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000555245	ENST00000349901		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-intron	ENST00000555245	ENST00000392059		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000304593		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-3UTR	ENST00000556605	ENST00000476924		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000353339		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000354503		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000409565		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000409616		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000337110		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000524634		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000556605	ENST00000349901		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-intron	ENST00000556605	ENST00000392059		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000304593		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-3UTR	ENST00000336643	ENST00000476924		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000353339		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000354503		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000409565		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000409616		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000337110		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000524634		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000336643	ENST00000349901		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-intron	ENST00000336643	ENST00000392059		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000304593		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-3UTR	ENST00000031146	ENST00000476924		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000353339		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000354503		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000409565		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000409616		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000337110		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000524634		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-5UTR	ENST00000031146	ENST00000349901		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
5UTR-intron	ENST00000031146	ENST00000392059		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000304593		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-3UTR	ENST00000557046	ENST00000476924		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000353339		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000354503		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000409565		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000409616		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000337110		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000524634		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-5UTR	ENST00000557046	ENST00000349901		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
intron-intron	ENST00000557046	ENST00000392059		ChiTaRS3.1			BF315963	SLC39A9	chr14	69865776	+	MFF	chr2	228190008	+
3UTR-3UTR	ENST00000305135	ENST00000300747		ChiTaRS3.1			AA436602	YEATS2	chr3	183530189	-	TRIM68	chr11	4621216	+
intron-intron	ENST00000370225	ENST00000401061		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000370225	ENST00000477188		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000535881	ENST00000401061		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000535881	ENST00000477188		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000536513	ENST00000401061		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000536513	ENST00000477188		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000465352	ENST00000401061		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000465352	ENST00000477188		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000535735	ENST00000401061		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-intron	ENST00000535735	ENST00000477188		ChiTaRS3.1			BM713995	ABCA4	chr1	94474321	-	MMACHC	chr1	45976798	-
intron-3CDS	ENST00000459937	ENST00000378797		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000378781		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000429979		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000378784		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000378787		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000389908		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000409879		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000322896		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000459937	ENST00000534925		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-intron	ENST00000459937	ENST00000480935		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000378797		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000378781		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000429979		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000378784		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000378787		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000389908		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000409879		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000322896		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000424142	ENST00000534925		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-intron	ENST00000424142	ENST00000480935		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000378797		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000378781		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000429979		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000378784		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000378787		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000389908		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000409879		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000322896		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000393114	ENST00000534925		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-intron	ENST00000393114	ENST00000480935		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000378797		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000378781		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000429979		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000378784		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000378787		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000389908		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000409879		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000322896		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000430372	ENST00000534925		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-intron	ENST00000430372	ENST00000480935		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000378797		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000378781		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000429979		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000378784		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000378787		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000389908		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000409879		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000322896		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-3CDS	ENST00000483029	ENST00000534925		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
intron-intron	ENST00000483029	ENST00000480935		ChiTaRS3.1			DB123095	C7orf49	chr7	134833024	+	KIAA0226L	chr13	46942950	-
5CDS-3UTR	ENST00000315717	ENST00000585421		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000315717	ENST00000536189		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000315717	ENST00000262768		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000315717	ENST00000586057		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000295685	ENST00000585421		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000295685	ENST00000536189		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000295685	ENST00000262768		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
5CDS-3UTR	ENST00000295685	ENST00000586057		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
3UTR-3UTR	ENST00000477992	ENST00000585421		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
3UTR-3UTR	ENST00000477992	ENST00000536189		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
3UTR-3UTR	ENST00000477992	ENST00000262768		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
3UTR-3UTR	ENST00000477992	ENST00000586057		ChiTaRS3.1			AW361137	ARPC2	chr2	219103470	+	TIMP2	chr17	76849405	-
3UTR-intron	ENST00000216361	ENST00000204726		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000450791		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000456883		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000537452		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000545875		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000216361	ENST00000534967		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000204726		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000450791		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000456883		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000537452		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000545875		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000396618	ENST00000534967		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000204726		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000450791		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000456883		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000537452		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000545875		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
intron-intron	ENST00000475087	ENST00000534967		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000204726		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000450791		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000456883		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000537452		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000545875		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000460581	ENST00000534967		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000204726		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000450791		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000456883		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000537452		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000545875		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
3UTR-intron	ENST00000382493	ENST00000534967		ChiTaRS3.1			DV459654	COCH	chr14	31359292	+	GOLGA3	chr12	133402654	+
Frame-shit	ENST00000346916	ENST00000265113		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000346916	ENST00000506725		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000346916	ENST00000381918		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
Frame-shit	ENST00000545507	ENST00000265113		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000545507	ENST00000506725		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000545507	ENST00000381918		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
Frame-shit	ENST00000333511	ENST00000265113		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000333511	ENST00000506725		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000333511	ENST00000381918		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
Frame-shit	ENST00000353555	ENST00000265113		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000353555	ENST00000506725		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
5CDS-intron	ENST00000353555	ENST00000381918		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
intron-3CDS	ENST00000574970	ENST00000265113		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
intron-intron	ENST00000574970	ENST00000506725		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
intron-intron	ENST00000574970	ENST00000381918		ChiTaRS3.1			DA210402	BSG	chr19	580441	+	SLC1A3	chr5	36686310	+
intron-intron	ENST00000361545	ENST00000552551		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000361545	ENST00000293308		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000361545	ENST00000546897		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000361545	ENST00000552150		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000361545	ENST00000549198		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000223398	ENST00000552551		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000223398	ENST00000293308		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000223398	ENST00000546897		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000223398	ENST00000552150		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000223398	ENST00000549198		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000395060	ENST00000552551		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000395060	ENST00000293308		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000395060	ENST00000546897		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000395060	ENST00000552150		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-intron	ENST00000395060	ENST00000549198		ChiTaRS3.1			BU153499	CLIP2	chr7	73767601	+	KRT8	chr12	53290971	+
intron-5UTR	ENST00000426342	ENST00000264474		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000426342	ENST00000479204		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000399232	ENST00000264474		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000399232	ENST00000479204		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000399222	ENST00000264474		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000399222	ENST00000479204		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000357362	ENST00000264474		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000357362	ENST00000479204		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000439988	ENST00000264474		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000439988	ENST00000479204		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000472499	ENST00000264474		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
intron-5UTR	ENST00000472499	ENST00000479204		ChiTaRS3.1			BE840752	MDGA2	chr14	47730706	+	CSTA	chr3	122044117	+
5CDS-intron	ENST00000309859	ENST00000370656		ChiTaRS3.1			AA766308	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000309859	ENST00000370654		ChiTaRS3.1			AA766308	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000567468	ENST00000370656		ChiTaRS3.1			AA766308	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000567468	ENST00000370654		ChiTaRS3.1			AA766308	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-intron	ENST00000569182	ENST00000370656		ChiTaRS3.1			AA766308	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
intron-intron	ENST00000569182	ENST00000370654		ChiTaRS3.1			AA766308	GGA2	chr16	23505624	-	RPF1	chr1	84956001	+
5CDS-intron	ENST00000304312	ENST00000367618		ChiTaRS3.1			CA418371	ATP5I	chr4	666225	-	AXDND1	chr1	179459921	-
5CDS-intron	ENST00000304312	ENST00000457238		ChiTaRS3.1			CA418371	ATP5I	chr4	666225	-	AXDND1	chr1	179459921	-
5CDS-intron	ENST00000304312	ENST00000461179		ChiTaRS3.1			CA418371	ATP5I	chr4	666225	-	AXDND1	chr1	179459921	-
5CDS-intron	ENST00000506525	ENST00000367618		ChiTaRS3.1			CA418371	ATP5I	chr4	666225	-	AXDND1	chr1	179459921	-
5CDS-intron	ENST00000506525	ENST00000457238		ChiTaRS3.1			CA418371	ATP5I	chr4	666225	-	AXDND1	chr1	179459921	-
5CDS-intron	ENST00000506525	ENST00000461179		ChiTaRS3.1			CA418371	ATP5I	chr4	666225	-	AXDND1	chr1	179459921	-
intron-3CDS	ENST00000300026	ENST00000373715		ChiTaRS3.1			BE958249	PPIB	chr15	64454295	-	SRSF3	chr6	36566658	+
intron-3CDS	ENST00000300026	ENST00000339436		ChiTaRS3.1			BE958249	PPIB	chr15	64454295	-	SRSF3	chr6	36566658	+
intron-3CDS	ENST00000558492	ENST00000373715		ChiTaRS3.1			BE958249	PPIB	chr15	64454295	-	SRSF3	chr6	36566658	+
intron-3CDS	ENST00000558492	ENST00000339436		ChiTaRS3.1			BE958249	PPIB	chr15	64454295	-	SRSF3	chr6	36566658	+
5CDS-intron	ENST00000422945	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000422945	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000556068	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000556068	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000554442	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000554442	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000328724	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000328724	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000350249	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000350249	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000445439	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000445439	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000334743	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000334743	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000557095	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5CDS-intron	ENST00000557095	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000556260	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000556260	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000556946	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000556946	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000557714	ENST00000326793		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
intron-intron	ENST00000557714	ENST00000472860		ChiTaRS3.1			AW847260	PPP2R5C	chr14	102368086	+	ACAP2	chr3	195155451	-
5UTR-5UTR	ENST00000194097	ENST00000297689		ChiTaRS3.1			DA676009	NAIP	chr5	70316486	-	NFIL3	chr9	94173191	-
5UTR-5UTR	ENST00000517649	ENST00000297689		ChiTaRS3.1			DA676009	NAIP	chr5	70316486	-	NFIL3	chr9	94173191	-
5CDS-5UTR	ENST00000523981	ENST00000297689		ChiTaRS3.1			DA676009	NAIP	chr5	70316486	-	NFIL3	chr9	94173191	-
5UTR-5UTR	ENST00000508426	ENST00000297689		ChiTaRS3.1			DA676009	NAIP	chr5	70316486	-	NFIL3	chr9	94173191	-
5CDS-5UTR	ENST00000503719	ENST00000297689		ChiTaRS3.1			DA676009	NAIP	chr5	70316486	-	NFIL3	chr9	94173191	-
intron-3CDS	ENST00000398148	ENST00000320954		ChiTaRS3.1			BU902214	KHSRP	chr19	6424675	-	CRTAP	chr3	33155645	+
intron-3CDS	ENST00000398148	ENST00000449224		ChiTaRS3.1			BU902214	KHSRP	chr19	6424675	-	CRTAP	chr3	33155645	+
intron-intron	ENST00000398148	ENST00000485310		ChiTaRS3.1			BU902214	KHSRP	chr19	6424675	-	CRTAP	chr3	33155645	+
intron-3CDS	ENST00000368026	ENST00000340645		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000368026	ENST00000393667		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000368026	ENST00000472829		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000289779	ENST00000340645		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000289779	ENST00000393667		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000289779	ENST00000472829		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000537746	ENST00000340645		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000537746	ENST00000393667		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000537746	ENST00000472829		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000472573	ENST00000340645		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000472573	ENST00000393667		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-intron	ENST00000472573	ENST00000472829		ChiTaRS3.1			BG546557	F11R	chr1	160971117	-	GOLGB1	chr3	121413548	-
intron-3CDS	ENST00000372325	ENST00000311852		ChiTaRS3.1			BI012457	SFTPA2	chr10	81316508	-	MMP14	chr14	23310820	+
intron-3UTR	ENST00000372325	ENST00000548162		ChiTaRS3.1			BI012457	SFTPA2	chr10	81316508	-	MMP14	chr14	23310820	+
intron-3CDS	ENST00000372327	ENST00000311852		ChiTaRS3.1			BI012457	SFTPA2	chr10	81316508	-	MMP14	chr14	23310820	+
intron-3UTR	ENST00000372327	ENST00000548162		ChiTaRS3.1			BI012457	SFTPA2	chr10	81316508	-	MMP14	chr14	23310820	+
intron-5UTR	ENST00000307790	ENST00000499666		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000307790	ENST00000226522		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000307790	ENST00000515100		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-5UTR	ENST00000397771	ENST00000499666		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000397771	ENST00000226522		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000397771	ENST00000515100		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-5UTR	ENST00000542393	ENST00000499666		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000542393	ENST00000226522		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000542393	ENST00000515100		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-5UTR	ENST00000478812	ENST00000499666		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000478812	ENST00000226522		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
intron-intron	ENST00000478812	ENST00000515100		ChiTaRS3.1			AK093581	ASCC2	chr22	30195484	-	LAMTOR3	chr4	100815585	-
3UTR-intron	ENST00000372546	ENST00000333190		ChiTaRS3.1			BM671376	DOLPP1	chr9	131851408	-	ZNF804B	chr7	88556211	-
3UTR-intron	ENST00000406974	ENST00000333190		ChiTaRS3.1			BM671376	DOLPP1	chr9	131851408	-	ZNF804B	chr7	88556211	-
3UTR-intron	ENST00000540102	ENST00000333190		ChiTaRS3.1			BM671376	DOLPP1	chr9	131851408	-	ZNF804B	chr7	88556211	-
5CDS-3UTR	ENST00000399959	ENST00000399959		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000399959	ENST00000478993		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000399959	ENST00000457138		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000399959	ENST00000441189		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-intron	ENST00000399959	ENST00000542215		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
3UTR-3UTR	ENST00000478993	ENST00000399959		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
3UTR-3UTR	ENST00000478993	ENST00000478993		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
3UTR-3UTR	ENST00000478993	ENST00000457138		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
3UTR-3UTR	ENST00000478993	ENST00000441189		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
3UTR-intron	ENST00000478993	ENST00000542215		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000457138	ENST00000399959		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000457138	ENST00000478993		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000457138	ENST00000457138		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-3UTR	ENST00000457138	ENST00000441189		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
5CDS-intron	ENST00000457138	ENST00000542215		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000441189	ENST00000399959		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000441189	ENST00000478993		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000441189	ENST00000457138		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000441189	ENST00000441189		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-intron	ENST00000441189	ENST00000542215		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000542215	ENST00000399959		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000542215	ENST00000478993		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000542215	ENST00000457138		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-3UTR	ENST00000542215	ENST00000441189		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
intron-intron	ENST00000542215	ENST00000542215		ChiTaRS3.1			BM991732	DDX3X	chrX	41203005	-	DDX3X	chrX	41207037	-
3UTR-3CDS	ENST00000371666	ENST00000409304		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
3UTR-3CDS	ENST00000371666	ENST00000258405		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
3UTR-3CDS	ENST00000371666	ENST00000409840		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
3UTR-3CDS	ENST00000371666	ENST00000447280		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371642	ENST00000409304		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371642	ENST00000258405		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371642	ENST00000409840		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371642	ENST00000447280		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000481868	ENST00000409304		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000481868	ENST00000258405		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000481868	ENST00000409840		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000481868	ENST00000447280		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371637	ENST00000409304		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371637	ENST00000258405		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371637	ENST00000409840		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
intron-3CDS	ENST00000371637	ENST00000447280		ChiTaRS3.1			BQ774660	IL13RA1	chrX	117927985	-	SERPINE2	chr2	224849616	+
In-frame	ENST00000277541	ENST00000359428		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
In-frame	ENST00000277541	ENST00000411637		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
In-frame	ENST00000277541	ENST00000451030		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
5CDS-intron	ENST00000277541	ENST00000483497		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
5CDS-intron	ENST00000277541	ENST00000465486		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
intron-3CDS	ENST00000491649	ENST00000359428		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
intron-3CDS	ENST00000491649	ENST00000411637		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
intron-3CDS	ENST00000491649	ENST00000451030		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
intron-intron	ENST00000491649	ENST00000483497		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
intron-intron	ENST00000491649	ENST00000465486		ChiTaRS3.1			XX000003	NOTCH1	chr9	139438476	-	NUP214	chr9	134062675	+
3UTR-intron	ENST00000515359	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
3UTR-intron	ENST00000308775	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
3UTR-intron	ENST00000541308	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
3UTR-intron	ENST00000539901	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
3UTR-intron	ENST00000545947	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
3UTR-intron	ENST00000538711	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
intron-intron	ENST00000479935	ENST00000384994		ChiTaRS3.1			CA411584	DAG1	chr3	49572589	-	NEAT1	chr11	65193748	-
5CDS-3UTR	ENST00000378565	ENST00000385193		ChiTaRS3.1			AU125620	ITM2B	chr13	48830412	+	MIR632	chr17	30677180	+
intron-3UTR	ENST00000378549	ENST00000385193		ChiTaRS3.1			AU125620	ITM2B	chr13	48830412	+	MIR632	chr17	30677180	+
In-frame	ENST00000534358	ENST00000524717		ChiTaRS3.1			AJ972402	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
In-frame	ENST00000389506	ENST00000524717		ChiTaRS3.1			AJ972402	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
In-frame	ENST00000354520	ENST00000524717		ChiTaRS3.1			AJ972402	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
3UTR-3CDS	ENST00000420751	ENST00000524717		ChiTaRS3.1			AJ972402	KMT2A	chr11	118355030	+	MAML2	chr11	95724893	-
5CDS-3UTR	ENST00000328908	ENST00000346798		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000354192		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000348990		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000357903		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000358918		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000359726		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000448388		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000440126		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000328908	ENST00000439274		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-intron	ENST00000328908	ENST00000474136		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000346798		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000354192		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000348990		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000357903		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000358918		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000359726		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000448388		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000440126		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-3UTR	ENST00000397588	ENST00000439274		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5CDS-intron	ENST00000397588	ENST00000474136		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000346798		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000354192		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000348990		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000357903		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000358918		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000359726		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000448388		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000440126		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3UTR	ENST00000472453	ENST00000439274		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-intron	ENST00000472453	ENST00000474136		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000346798		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000354192		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000348990		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000357903		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000358918		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000359726		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000448388		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000440126		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000449732	ENST00000439274		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-intron	ENST00000449732	ENST00000474136		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000346798		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000354192		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000348990		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000357903		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000358918		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000359726		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000448388		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000440126		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-3UTR	ENST00000343762	ENST00000439274		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
5UTR-intron	ENST00000343762	ENST00000474136		ChiTaRS3.1			BE091543	CDYL	chr6	4892138	+	APP	chr21	27253892	-
intron-3CDS	ENST00000262384	ENST00000262384		ChiTaRS3.1			AA827624	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000262384	ENST00000565423		ChiTaRS3.1			AA827624	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-3CDS	ENST00000565423	ENST00000262384		ChiTaRS3.1			AA827624	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000565423	ENST00000565423		ChiTaRS3.1			AA827624	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
Frame-shit	ENST00000520753	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000520753	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
Frame-shit	ENST00000521613	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000521613	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
Frame-shit	ENST00000519940	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000519940	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
Frame-shit	ENST00000519332	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000519332	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
Frame-shit	ENST00000520007	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000520007	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
intron-3CDS	ENST00000600800	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
intron-intron	ENST00000600800	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5UTR-3CDS	ENST00000357778	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5UTR-intron	ENST00000357778	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
In-frame	ENST00000391898	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000391898	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5UTR-3CDS	ENST00000359009	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5UTR-intron	ENST00000359009	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
In-frame	ENST00000447740	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000447740	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
In-frame	ENST00000520153	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000520153	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
In-frame	ENST00000520015	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000520015	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
In-frame	ENST00000522431	ENST00000254719		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
5CDS-intron	ENST00000522431	ENST00000573924		ChiTaRS3.1			DA884322	CARD8	chr19	48744218	-	RPA1	chr17	1746096	+
3UTR-3UTR	ENST00000338316	ENST00000580599		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
3UTR-3UTR	ENST00000338316	ENST00000394638		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
3UTR-3UTR	ENST00000338316	ENST00000269053		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
3UTR-3UTR	ENST00000338316	ENST00000394637		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000537121	ENST00000580599		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000537121	ENST00000394638		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000537121	ENST00000269053		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000537121	ENST00000394637		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000513693	ENST00000580599		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000513693	ENST00000394638		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000513693	ENST00000269053		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
intron-3UTR	ENST00000513693	ENST00000394637		ChiTaRS3.1			AA398583	ADCY2	chr5	7827585	-	SPACA3	chr17	31324883	-
3UTR-3UTR	ENST00000301178	ENST00000404816		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-3UTR	ENST00000301178	ENST00000354476		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-3UTR	ENST00000301178	ENST00000390003		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-3UTR	ENST00000301178	ENST00000418533		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-3UTR	ENST00000301178	ENST00000402934		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-3UTR	ENST00000301178	ENST00000404525		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-3UTR	ENST00000301178	ENST00000407925		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-intron	ENST00000301178	ENST00000272273		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
3UTR-intron	ENST00000301178	ENST00000498013		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000404816		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000354476		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000390003		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000418533		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000402934		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000404525		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000359092	ENST00000407925		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-intron	ENST00000359092	ENST00000272273		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-intron	ENST00000359092	ENST00000498013		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000404816		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000354476		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000390003		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000418533		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000402934		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000404525		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000594880	ENST00000407925		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-intron	ENST00000594880	ENST00000272273		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-intron	ENST00000594880	ENST00000498013		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000404816		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000354476		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000390003		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000418533		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000402934		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000404525		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3UTR	ENST00000593513	ENST00000407925		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-intron	ENST00000593513	ENST00000272273		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-intron	ENST00000593513	ENST00000498013		ChiTaRS3.1			CR740035	AXL	chr19	41767546	+	LTBP1	chr2	33623778	+
intron-3CDS	ENST00000356663	ENST00000322723		ChiTaRS3.1			BG954816	TMEM259	chr19	1013264	-	NCL	chr2	232319974	-
intron-3CDS	ENST00000333175	ENST00000322723		ChiTaRS3.1			BG954816	TMEM259	chr19	1013264	-	NCL	chr2	232319974	-
5UTR-3CDS	ENST00000361439	ENST00000399410		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000349029		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000351154		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000399408		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000345148		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-3CDS	ENST00000361439	ENST00000346370		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
5UTR-intron	ENST00000361439	ENST00000576557		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000399410		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000349029		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000351154		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000399408		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000345148		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-3CDS	ENST00000565384	ENST00000346370		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
intron-intron	ENST00000565384	ENST00000576557		ChiTaRS3.1			BE241679	NSMCE1	chr16	27280025	-	ABCC1	chr16	16205231	+
Frame-shit	ENST00000347401	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000347401	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000347401	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000347401	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000347401	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000347401	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000353578	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000353578	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000353578	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000353578	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000353578	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000353578	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000295550	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000295550	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000295550	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000295550	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000295550	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000295550	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000472056	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000472056	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000472056	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000472056	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000472056	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000472056	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000409809	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000409809	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000409809	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000409809	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000409809	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000409809	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000346358	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000346358	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000346358	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000346358	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000346358	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000346358	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392004	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392004	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392004	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392004	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392004	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000392004	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392003	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392003	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392003	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392003	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
Frame-shit	ENST00000392003	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
5CDS-intron	ENST00000392003	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-3CDS	ENST00000473258	ENST00000532317		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-3CDS	ENST00000473258	ENST00000526033		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-3CDS	ENST00000473258	ENST00000393346		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-3CDS	ENST00000473258	ENST00000528398		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-3CDS	ENST00000473258	ENST00000356360		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-intron	ENST00000473258	ENST00000528411		ChiTaRS3.1			DA556762	COL6A3	chr2	238305369	-	PICALM	chr11	85695019	-
intron-3CDS	ENST00000369831	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369831	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000460717	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000369827	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000442650	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000464206	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
3UTR-3CDS	ENST00000241337	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000414179	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000543796		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000541630		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000392369		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000254675		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-3CDS	ENST00000369829	ENST00000392367		ChiTaRS3.1			BU859345	GSTM2	chr1	110217567	+	RAN	chr12	131359137	+
intron-intron	ENST00000546111	ENST00000527422		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000546111	ENST00000356386		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000546111	ENST00000396934		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000546111	ENST00000377708		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000546111	ENST00000396948		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000546111	ENST00000532994		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000546111	ENST00000508906		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000527422		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000356386		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000396934		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000377708		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000396948		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000532994		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000535923	ENST00000508906		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000527422		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000356386		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000396934		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000377708		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000396948		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000532994		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000542912	ENST00000508906		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000527422		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000356386		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000396934		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000377708		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000396948		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000532994		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000440277	ENST00000508906		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000527422		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000356386		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000396934		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000377708		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000396948		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000532994		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000399433	ENST00000508906		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000527422		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000356386		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000396934		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000377708		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000396948		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000532994		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
intron-intron	ENST00000544134	ENST00000508906		ChiTaRS3.1			AA995792	PHB2	chr12	7074772	+	BTN3A2	chr6	26368495	-
3UTR-intron	ENST00000229270	ENST00000518659		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
3UTR-intron	ENST00000229270	ENST00000545108		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
3UTR-intron	ENST00000229270	ENST00000520393		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
3UTR-intron	ENST00000229270	ENST00000519204		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
3UTR-intron	ENST00000229270	ENST00000520394		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
3UTR-intron	ENST00000229270	ENST00000403607		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000396705	ENST00000518659		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000396705	ENST00000545108		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000396705	ENST00000520393		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000396705	ENST00000519204		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000396705	ENST00000520394		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000396705	ENST00000403607		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-intron	ENST00000488464	ENST00000518659		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-intron	ENST00000488464	ENST00000545108		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-intron	ENST00000488464	ENST00000520393		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-intron	ENST00000488464	ENST00000519204		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-intron	ENST00000488464	ENST00000520394		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-intron	ENST00000488464	ENST00000403607		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000535434	ENST00000518659		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000535434	ENST00000545108		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000535434	ENST00000520393		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000535434	ENST00000519204		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000535434	ENST00000520394		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
5CDS-intron	ENST00000535434	ENST00000403607		ChiTaRS3.1			AV721061	TPI1	chr12	6979992	+	TENM2	chr5	166839638	+
intron-3CDS	ENST00000298532	ENST00000258415		ChiTaRS3.1			CX753377	SNAPC4	chr9	139273287	-	CYP27A1	chr2	219677329	+
intron-3UTR	ENST00000234160	ENST00000251527		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-intron	ENST00000234160	ENST00000497111		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-intron	ENST00000234160	ENST00000435514		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-3UTR	ENST00000493692	ENST00000251527		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-intron	ENST00000493692	ENST00000497111		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-intron	ENST00000493692	ENST00000435514		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-3UTR	ENST00000452526	ENST00000251527		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-intron	ENST00000452526	ENST00000497111		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
intron-intron	ENST00000452526	ENST00000435514		ChiTaRS3.1			CN371838	GORASP2	chr2	171802544	+	ESYT2	chr7	158524024	-
5UTR-3CDS	ENST00000355957	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000355957	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000361770	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000361770	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000359617	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000359617	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000371141	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
5UTR-3CDS	ENST00000371141	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000371132	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000371132	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000496003	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000496003	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000358029	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000358029	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000361830	ENST00000392827		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000361830	ENST00000391553		ChiTaRS3.1			BQ944843	STX16	chr20	57226462	+	RNF208	chr9	140115602	-
intron-3CDS	ENST00000295470	ENST00000345317		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000295470	ENST00000539623		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000295470	ENST00000489977		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-3CDS	ENST00000349655	ENST00000345317		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000349655	ENST00000539623		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000349655	ENST00000489977		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-3CDS	ENST00000602300	ENST00000345317		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000602300	ENST00000539623		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000602300	ENST00000489977		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-3CDS	ENST00000502762	ENST00000345317		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000502762	ENST00000539623		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000502762	ENST00000489977		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-3CDS	ENST00000514511	ENST00000345317		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000514511	ENST00000539623		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
intron-intron	ENST00000514511	ENST00000489977		ChiTaRS3.1			CA406851	HNRNPDL	chr4	83350466	-	SKAP2	chr7	26904023	-
3UTR-3CDS	ENST00000550697	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000550697	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000550697	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000550697	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000550697	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000550697	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000550697	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000550697	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000550697	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000550697	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000550697	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000548580	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000548580	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548580	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548580	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548580	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548580	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548580	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548580	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000548580	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000548580	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000548580	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000293422	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000293422	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000293422	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000293422	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000293422	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000293422	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000293422	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000293422	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000293422	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000293422	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000293422	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000348108	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000348108	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000348108	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000348108	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000348108	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000348108	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000348108	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000348108	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000348108	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000348108	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000348108	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000549017	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000549017	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549017	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549017	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549017	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549017	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549017	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549017	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000549017	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000549017	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000549017	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000549566	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000549566	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549566	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549566	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549566	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549566	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549566	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000549566	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000549566	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000549566	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000549566	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000536128	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000536128	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000536128	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000536128	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000536128	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000536128	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000536128	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000536128	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000536128	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000536128	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000536128	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000547649	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000547649	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000547649	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000547649	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000547649	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000547649	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000547649	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000547649	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000547649	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000547649	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000547649	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000547408	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000547408	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000547408	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000547408	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000547408	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000547408	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000547408	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000547408	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000547408	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000547408	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000547408	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000551589	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000551589	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551589	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551589	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551589	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551589	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551589	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551589	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000551589	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000551589	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000551589	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000548400	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3CDS	ENST00000548400	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548400	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548400	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548400	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548400	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548400	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-3UTR	ENST00000548400	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000548400	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000548400	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
3UTR-intron	ENST00000548400	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000548293	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000548293	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000548293	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000548293	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000548293	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000548293	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000548293	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000548293	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000548293	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000548293	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000548293	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000551954	ENST00000421834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3CDS	ENST00000551954	ENST00000370769		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551954	ENST00000312431		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551954	ENST00000370754		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551954	ENST00000370788		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551954	ENST00000361203		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551954	ENST00000244364		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-3UTR	ENST00000551954	ENST00000446842		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000551954	ENST00000340834		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000551954	ENST00000370765		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
intron-intron	ENST00000551954	ENST00000518935		ChiTaRS3.1			AI952500	MYL6	chr12	56555201	-	DST	chr6	56323908	+
5CDS-intron	ENST00000523037	ENST00000452154		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000523037	ENST00000414788		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000523037	ENST00000430150		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000523037	ENST00000452021		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000523037	ENST00000412319		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000523037	ENST00000416841		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000523037	ENST00000509613		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000452154		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000414788		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000430150		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000452021		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000412319		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000416841		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5UTR-intron	ENST00000265229	ENST00000509613		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000452154		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000414788		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000430150		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000452021		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000412319		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000416841		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000439747	ENST00000509613		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000452154		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000414788		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000430150		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000452021		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000412319		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000416841		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
5CDS-intron	ENST00000522038	ENST00000509613		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000452154		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000414788		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000430150		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000452021		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000412319		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000416841		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
intron-intron	ENST00000518364	ENST00000509613		ChiTaRS3.1			DA368331	MRPL22	chr5	154320829	+	FAM156B	chrX	52985545	-
3UTR-3CDS	ENST00000265260	ENST00000376279		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000265260	ENST00000376286		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000265260	ENST00000376285		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-intron	ENST00000265260	ENST00000485946		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000469941	ENST00000376279		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000469941	ENST00000376286		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000469941	ENST00000376285		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-intron	ENST00000469941	ENST00000485946		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000296024	ENST00000376279		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000296024	ENST00000376286		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-3CDS	ENST00000296024	ENST00000376285		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
3UTR-intron	ENST00000296024	ENST00000485946		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
intron-3CDS	ENST00000486406	ENST00000376279		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
intron-3CDS	ENST00000486406	ENST00000376286		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
intron-3CDS	ENST00000486406	ENST00000376285		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
intron-intron	ENST00000486406	ENST00000485946		ChiTaRS3.1			AI951320	PCNP	chr3	101313224	-	PCCA	chr13	100921006	-
intron-intron	ENST00000215570	ENST00000392411		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000321280		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000428708		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000575712		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000575245		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000435091		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000321300		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000573894		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000215570	ENST00000416299		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000392411		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000321280		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000428708		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000575712		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000575245		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000435091		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000321300		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000573894		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
intron-intron	ENST00000591871	ENST00000416299		ChiTaRS3.1			CN308207	TIMM13	chr19	2426921	-	BAIAP2	chr17	79064989	+
In-frame	ENST00000402363	ENST00000329276		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
5CDS-3UTR	ENST00000402363	ENST00000492135		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
In-frame	ENST00000537798	ENST00000329276		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
5CDS-3UTR	ENST00000537798	ENST00000492135		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
In-frame	ENST00000350030	ENST00000329276		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
5CDS-3UTR	ENST00000350030	ENST00000492135		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
In-frame	ENST00000372052	ENST00000329276		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
5CDS-3UTR	ENST00000372052	ENST00000492135		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
In-frame	ENST00000351223	ENST00000329276		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
5CDS-3UTR	ENST00000351223	ENST00000492135		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
intron-3CDS	ENST00000530073	ENST00000329276		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
intron-3UTR	ENST00000530073	ENST00000492135		ChiTaRS3.1			CN266780	NASP	chr1	46072216	+	NOP56	chr20	2637494	+
intron-intron	ENST00000301187	ENST00000288532		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000301187	ENST00000445328		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000416963	ENST00000288532		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000416963	ENST00000445328		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000376591	ENST00000288532		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000376591	ENST00000445328		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000476013	ENST00000288532		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-intron	ENST00000476013	ENST00000445328		ChiTaRS3.1			BE830375	TMC4	chr19	54663928	-	COQ5	chr12	120963933	-
intron-5UTR	ENST00000466801	ENST00000324379		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000466801	ENST00000356511		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000466801	ENST00000470213		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000466801	ENST00000372830		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-intron	ENST00000466801	ENST00000480169		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409321	ENST00000324379		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409321	ENST00000356511		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409321	ENST00000470213		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409321	ENST00000372830		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-intron	ENST00000409321	ENST00000480169		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
3UTR-5UTR	ENST00000409115	ENST00000324379		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
3UTR-5UTR	ENST00000409115	ENST00000356511		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
3UTR-5UTR	ENST00000409115	ENST00000470213		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
3UTR-5UTR	ENST00000409115	ENST00000372830		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
3UTR-intron	ENST00000409115	ENST00000480169		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
5CDS-5UTR	ENST00000341369	ENST00000324379		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
5CDS-5UTR	ENST00000341369	ENST00000356511		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
5CDS-5UTR	ENST00000341369	ENST00000470213		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
5CDS-5UTR	ENST00000341369	ENST00000372830		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
5CDS-intron	ENST00000341369	ENST00000480169		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409683	ENST00000324379		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409683	ENST00000356511		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409683	ENST00000470213		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000409683	ENST00000372830		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-intron	ENST00000409683	ENST00000480169		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000410064	ENST00000324379		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000410064	ENST00000356511		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000410064	ENST00000470213		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-5UTR	ENST00000410064	ENST00000372830		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
intron-intron	ENST00000410064	ENST00000480169		ChiTaRS3.1			BQ923234	PTMA	chr2	232578241	+	PPIE	chr1	40204568	+
3UTR-5UTR	ENST00000377452	ENST00000396062		ChiTaRS3.1			M90309	DTD1	chr20	18744527	+	FKBP3	chr14	45603664	-
3UTR-5UTR	ENST00000377452	ENST00000216330		ChiTaRS3.1			M90309	DTD1	chr20	18744527	+	FKBP3	chr14	45603664	-
intron-5UTR	ENST00000494921	ENST00000396062		ChiTaRS3.1			M90309	DTD1	chr20	18744527	+	FKBP3	chr14	45603664	-
intron-5UTR	ENST00000494921	ENST00000216330		ChiTaRS3.1			M90309	DTD1	chr20	18744527	+	FKBP3	chr14	45603664	-
intron-5UTR	ENST00000052754	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000425043	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000393155	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000228329	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000303320	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000552962	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000441303	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000420120	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000547568	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000456569	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000546370	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000546745	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000550099	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000551354	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000548768	ENST00000324803		ChiTaRS3.1			CV569111	DCN	chr12	91572239	-	CRIPAK	chr4	1387247	+
intron-5UTR	ENST00000324093	ENST00000316519		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-5UTR	ENST00000324093	ENST00000261686		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000324093	ENST00000316543		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000324093	ENST00000545511		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000324093	ENST00000543665		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000324093	ENST00000398953		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-5UTR	ENST00000393239	ENST00000316519		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-5UTR	ENST00000393239	ENST00000261686		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000393239	ENST00000316543		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000393239	ENST00000545511		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000393239	ENST00000543665		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000393239	ENST00000398953		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-5UTR	ENST00000504689	ENST00000316519		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-5UTR	ENST00000504689	ENST00000261686		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000504689	ENST00000316543		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000504689	ENST00000545511		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000504689	ENST00000543665		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-intron	ENST00000504689	ENST00000398953		ChiTaRS3.1			AI962214	PLXND1	chr3	129274314	+	AACS	chr12	125550062	-
intron-3CDS	ENST00000607838	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000607838	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000607838	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000591724	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000591724	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000332065	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000332065	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000589210	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000589210	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000335146	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000335146	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000467929	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000467929	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000405575	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000405575	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000411744	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000411744	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000261182		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000393263		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000431879		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000406660	ENST00000547773		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000544816		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000542344		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000535020		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000549596		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000547993		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000552342		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-5UTR	ENST00000406660	ENST00000548044		ChiTaRS3.1			BF756411	EXOC7	chr17	74078906	-	NAP1L1	chr12	76449919	-
intron-3CDS	ENST00000318607	ENST00000360534		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-5UTR	ENST00000318607	ENST00000491591		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-3CDS	ENST00000519004	ENST00000360534		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-5UTR	ENST00000519004	ENST00000491591		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-3CDS	ENST00000522387	ENST00000360534		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-5UTR	ENST00000522387	ENST00000491591		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-3CDS	ENST00000519596	ENST00000360534		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-5UTR	ENST00000519596	ENST00000491591		ChiTaRS3.1			BQ348968	PABPC1	chr8	101721898	-	DPP4	chr2	162862283	-
intron-3UTR	ENST00000260970	ENST00000551025		ChiTaRS3.1			AV723228	PPIG	chr2	170473205	-	CASP8AP2	chr6	90578548	+
intron-3UTR	ENST00000409714	ENST00000551025		ChiTaRS3.1			AV723228	PPIG	chr2	170473205	-	CASP8AP2	chr6	90578548	+
intron-3UTR	ENST00000462903	ENST00000551025		ChiTaRS3.1			AV723228	PPIG	chr2	170473205	-	CASP8AP2	chr6	90578548	+
intron-3UTR	ENST00000448752	ENST00000551025		ChiTaRS3.1			AV723228	PPIG	chr2	170473205	-	CASP8AP2	chr6	90578548	+
intron-3UTR	ENST00000482772	ENST00000551025		ChiTaRS3.1			AV723228	PPIG	chr2	170473205	-	CASP8AP2	chr6	90578548	+
intron-3CDS	ENST00000395601	ENST00000254624		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000395601	ENST00000334503		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000395601	ENST00000519656		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-intron	ENST00000395601	ENST00000521940		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000517992	ENST00000254624		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000517992	ENST00000334503		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000517992	ENST00000519656		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-intron	ENST00000517992	ENST00000521940		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000519177	ENST00000254624		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000519177	ENST00000334503		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-3CDS	ENST00000519177	ENST00000519656		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
intron-intron	ENST00000519177	ENST00000521940		ChiTaRS3.1			AI133211	SNTB1	chr8	121632630	-	EFR3A	chr8	132968112	+
In-frame	ENST00000369230	ENST00000588030		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
In-frame	ENST00000369230	ENST00000589660		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
In-frame	ENST00000369230	ENST00000588090		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
In-frame	ENST00000369230	ENST00000591935		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
In-frame	ENST00000369230	ENST00000589710		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
In-frame	ENST00000369230	ENST00000588230		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000413636		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000586472		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000589686		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000444172		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000587323		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000320936		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000587896		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000589235		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000585630		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000586773		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
5CDS-intron	ENST00000369230	ENST00000590188		ChiTaRS3.1			BG698664	PNLIPRP3	chr10	118202646	+	CIRBP	chr19	1271412	+
intron-3UTR	ENST00000400590	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000400590	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000320220	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000320220	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000382466	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000382466	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000542645	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000542645	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000415724	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000415724	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000422251	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000422251	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000494731	ENST00000376810		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000494731	ENST00000376804		ChiTaRS3.1			DA568045	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3CDS	ENST00000417009	ENST00000216281		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000417009	ENST00000334701		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000417009	ENST00000441629		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000417009	ENST00000558600		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000444799	ENST00000216281		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000444799	ENST00000334701		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000444799	ENST00000441629		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000444799	ENST00000558600		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000413065	ENST00000216281		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000413065	ENST00000334701		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000413065	ENST00000441629		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000413065	ENST00000558600		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000248566	ENST00000216281		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000248566	ENST00000334701		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000248566	ENST00000441629		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000248566	ENST00000558600		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000493858	ENST00000216281		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000493858	ENST00000334701		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000493858	ENST00000441629		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-intron	ENST00000493858	ENST00000558600		ChiTaRS3.1			DW408006	SHFM1	chr7	96339006	-	HSP90AA1	chr14	102552368	-
intron-3CDS	ENST00000544865	ENST00000261590		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-intron	ENST00000544865	ENST00000585206		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-3CDS	ENST00000263073	ENST00000261590		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-intron	ENST00000263073	ENST00000585206		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-3CDS	ENST00000354901	ENST00000261590		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-intron	ENST00000354901	ENST00000585206		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-3CDS	ENST00000536871	ENST00000261590		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-intron	ENST00000536871	ENST00000585206		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-3CDS	ENST00000573166	ENST00000261590		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
intron-intron	ENST00000573166	ENST00000585206		ChiTaRS3.1			BP223879	SMG6	chr17	2113443	-	DSG2	chr18	29111160	+
5UTR-3CDS	ENST00000340553	ENST00000409817		ChiTaRS3.1			AV743265	FOXN2	chr2	48541953	+	CXCR4	chr2	136873483	-
5UTR-3CDS	ENST00000340553	ENST00000241393		ChiTaRS3.1			AV743265	FOXN2	chr2	48541953	+	CXCR4	chr2	136873483	-
5UTR-5UTR	ENST00000340553	ENST00000466288		ChiTaRS3.1			AV743265	FOXN2	chr2	48541953	+	CXCR4	chr2	136873483	-
intron-3CDS	ENST00000336023	ENST00000369445		ChiTaRS3.1			BE960893	TUBA1B	chr12	49521750	-	F8A3	chrX	154687339	-
5UTR-5UTR	ENST00000342129	ENST00000446326		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000342129	ENST00000289816		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000342129	ENST00000568064		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000342129	ENST00000443381		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000446326		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000289816		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000568064		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000340951	ENST00000443381		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000446326		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000289816		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000568064		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000479452	ENST00000443381		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000446326		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000289816		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000568064		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000475006	ENST00000443381		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000446326		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000289816		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000568064		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
5UTR-5UTR	ENST00000465160	ENST00000443381		ChiTaRS3.1			AF354756	EXD3	chr9	140317565	-	ZNF276	chr16	89788935	+
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			CA455392	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-intron	ENST00000318008	ENST00000316292		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000318008	ENST00000491404		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-5UTR	ENST00000318008	ENST00000309268		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000318008	ENST00000331523		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000433206	ENST00000316292		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000433206	ENST00000491404		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-5UTR	ENST00000433206	ENST00000309268		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000433206	ENST00000331523		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000435347	ENST00000316292		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000435347	ENST00000491404		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-5UTR	ENST00000435347	ENST00000309268		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
3UTR-intron	ENST00000435347	ENST00000331523		ChiTaRS3.1			BC001412	LASP1	chr17	37075167	+	EEF1A1	chr6	74230769	-
5CDS-3UTR	ENST00000361200	ENST00000534336		ChiTaRS3.1			AJ707118	DUSP27	chr1	167097525	+	MALAT1	chr11	65267154	+
5CDS-3UTR	ENST00000271385	ENST00000534336		ChiTaRS3.1			AJ707118	DUSP27	chr1	167097525	+	MALAT1	chr11	65267154	+
5CDS-3UTR	ENST00000443333	ENST00000534336		ChiTaRS3.1			AJ707118	DUSP27	chr1	167097525	+	MALAT1	chr11	65267154	+
intron-3UTR	ENST00000485151	ENST00000534336		ChiTaRS3.1			AJ707118	DUSP27	chr1	167097525	+	MALAT1	chr11	65267154	+
intron-3CDS	ENST00000275036	ENST00000261234		ChiTaRS3.1			BM503944	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
intron-intron	ENST00000275036	ENST00000537982		ChiTaRS3.1			BM503944	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
intron-intron	ENST00000275036	ENST00000537373		ChiTaRS3.1			BM503944	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
Frame-shit	ENST00000344726	ENST00000261234		ChiTaRS3.1			BM503944	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
5CDS-intron	ENST00000344726	ENST00000537982		ChiTaRS3.1			BM503944	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
5CDS-intron	ENST00000344726	ENST00000537373		ChiTaRS3.1			BM503944	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
5CDS-intron	ENST00000221855	ENST00000373218		ChiTaRS3.1			AL561402	TBCB	chr19	36606557	+	EIF4EBP2	chr10	72164111	+
3UTR-intron	ENST00000392178	ENST00000373218		ChiTaRS3.1			AL561402	TBCB	chr19	36606557	+	EIF4EBP2	chr10	72164111	+
5CDS-intron	ENST00000589996	ENST00000373218		ChiTaRS3.1			AL561402	TBCB	chr19	36606557	+	EIF4EBP2	chr10	72164111	+
intron-intron	ENST00000585746	ENST00000373218		ChiTaRS3.1			AL561402	TBCB	chr19	36606557	+	EIF4EBP2	chr10	72164111	+
intron-intron	ENST00000586868	ENST00000373218		ChiTaRS3.1			AL561402	TBCB	chr19	36606557	+	EIF4EBP2	chr10	72164111	+
intron-intron	ENST00000399583	ENST00000424440		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-3UTR	ENST00000399583	ENST00000452881		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000399583	ENST00000433428		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000399583	ENST00000455816		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000399583	ENST00000409956		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000536091	ENST00000424440		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-3UTR	ENST00000536091	ENST00000452881		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000536091	ENST00000433428		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000536091	ENST00000455816		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000536091	ENST00000409956		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000538469	ENST00000424440		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-3UTR	ENST00000538469	ENST00000452881		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000538469	ENST00000433428		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000538469	ENST00000455816		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-intron	ENST00000538469	ENST00000409956		ChiTaRS3.1			AI204211	RADIL	chr7	4897398	+	SPATA3	chr2	231889734	-
intron-3UTR	ENST00000304979	ENST00000338779		ChiTaRS3.1			AW511494	PPIH	chr1	43147011	+	MTSS1L	chr16	70695206	-
intron-3UTR	ENST00000372550	ENST00000338779		ChiTaRS3.1			AW511494	PPIH	chr1	43147011	+	MTSS1L	chr16	70695206	-
intron-3UTR	ENST00000372549	ENST00000338779		ChiTaRS3.1			AW511494	PPIH	chr1	43147011	+	MTSS1L	chr16	70695206	-
intron-3UTR	ENST00000455203	ENST00000338779		ChiTaRS3.1			AW511494	PPIH	chr1	43147011	+	MTSS1L	chr16	70695206	-
intron-3UTR	ENST00000560359	ENST00000397752		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000560359	ENST00000318493		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000560359	ENST00000436117		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000560359	ENST00000495962		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000560359	ENST00000539704		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-3UTR	ENST00000499624	ENST00000397752		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499624	ENST00000318493		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499624	ENST00000436117		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499624	ENST00000495962		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499624	ENST00000539704		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-3UTR	ENST00000561289	ENST00000397752		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000561289	ENST00000318493		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000561289	ENST00000436117		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000561289	ENST00000495962		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000561289	ENST00000539704		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-3UTR	ENST00000499326	ENST00000397752		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499326	ENST00000318493		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499326	ENST00000436117		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499326	ENST00000495962		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000499326	ENST00000539704		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-3UTR	ENST00000558593	ENST00000397752		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000558593	ENST00000318493		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000558593	ENST00000436117		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000558593	ENST00000495962		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-intron	ENST00000558593	ENST00000539704		ChiTaRS3.1			CD683729	GABPB1-AS1	chr15	50662903	+	MET	chr7	116436949	+
intron-3CDS	ENST00000341511	ENST00000352432		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000341511	ENST00000343816		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000341511	ENST00000360273		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000341511	ENST00000383800		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000341511	ENST00000397077		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-5UTR	ENST00000341511	ENST00000467702		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000265662	ENST00000352432		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000265662	ENST00000343816		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000265662	ENST00000360273		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000265662	ENST00000383800		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000265662	ENST00000397077		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-5UTR	ENST00000265662	ENST00000467702		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000371605	ENST00000352432		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000371605	ENST00000343816		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000371605	ENST00000360273		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000371605	ENST00000383800		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000371605	ENST00000397077		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-5UTR	ENST00000371605	ENST00000467702		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000492260	ENST00000352432		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000492260	ENST00000343816		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000492260	ENST00000360273		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000492260	ENST00000383800		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-3CDS	ENST00000492260	ENST00000397077		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
intron-5UTR	ENST00000492260	ENST00000467702		ChiTaRS3.1			BE830705	ABCA2	chr9	139907752	-	ATP2B2	chr3	10370568	-
5CDS-intron	ENST00000361813	ENST00000380550		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000361813	ENST00000398395		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000361813	ENST00000380567		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000361813	ENST00000340096		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-3UTR	ENST00000361813	ENST00000490265		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000368267	ENST00000380550		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000368267	ENST00000398395		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000368267	ENST00000380567		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-intron	ENST00000368267	ENST00000340096		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
5CDS-3UTR	ENST00000368267	ENST00000490265		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
intron-intron	ENST00000489907	ENST00000380550		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
intron-intron	ENST00000489907	ENST00000398395		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
intron-intron	ENST00000489907	ENST00000380567		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
intron-intron	ENST00000489907	ENST00000340096		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
intron-3UTR	ENST00000489907	ENST00000490265		ChiTaRS3.1			AA313406	SMG5	chr1	156246875	-	OFD1	chrX	13769366	+
In-frame	ENST00000306125	ENST00000354293		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5CDS-intron	ENST00000306125	ENST00000600199		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5CDS-intron	ENST00000306125	ENST00000359032		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
In-frame	ENST00000414533	ENST00000354293		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5CDS-intron	ENST00000414533	ENST00000600199		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5CDS-intron	ENST00000414533	ENST00000359032		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5UTR-3CDS	ENST00000470225	ENST00000354293		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5UTR-intron	ENST00000470225	ENST00000600199		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5UTR-intron	ENST00000470225	ENST00000359032		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
Frame-shit	ENST00000420147	ENST00000354293		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5CDS-intron	ENST00000420147	ENST00000600199		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
5CDS-intron	ENST00000420147	ENST00000359032		ChiTaRS3.1			BU845330	QARS	chr3	49138787	-	AP2A1	chr19	50304216	+
intron-intron	ENST00000465812	ENST00000341832		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000465812	ENST00000340677		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000465812	ENST00000407249		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000465812	ENST00000317673		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000409052	ENST00000341832		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000409052	ENST00000340677		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000409052	ENST00000407249		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000409052	ENST00000317673		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000361779	ENST00000341832		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000361779	ENST00000340677		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000361779	ENST00000407249		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000361779	ENST00000317673		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000259206	ENST00000341832		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000259206	ENST00000340677		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000259206	ENST00000407249		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000259206	ENST00000317673		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000354115	ENST00000341832		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000354115	ENST00000340677		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000354115	ENST00000407249		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
3UTR-intron	ENST00000354115	ENST00000317673		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000409930	ENST00000341832		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000409930	ENST00000340677		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000409930	ENST00000407249		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000409930	ENST00000317673		ChiTaRS3.1			CA748662	IL1RN	chr2	113891213	-	CDK11B	chr1	1595753	+
intron-intron	ENST00000295688	ENST00000548312		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000295688	ENST00000242607		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000295688	ENST00000356742		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000295688	ENST00000439744		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368259	ENST00000548312		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368259	ENST00000242607		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368259	ENST00000356742		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368259	ENST00000439744		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368261	ENST00000548312		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368261	ENST00000242607		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368261	ENST00000356742		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368261	ENST00000439744		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000472765	ENST00000548312		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000472765	ENST00000242607		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000472765	ENST00000356742		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000472765	ENST00000439744		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368256	ENST00000548312		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368256	ENST00000242607		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368256	ENST00000356742		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-intron	ENST00000368256	ENST00000439744		ChiTaRS3.1			AA748732	CCT3	chr1	156280436	+	HVCN1	chr12	111091636	+
intron-3CDS	ENST00000460736	ENST00000397977		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
intron-intron	ENST00000460736	ENST00000521758		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
3UTR-3CDS	ENST00000379619	ENST00000397977		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
3UTR-intron	ENST00000379619	ENST00000521758		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
3UTR-3CDS	ENST00000264716	ENST00000397977		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
3UTR-intron	ENST00000264716	ENST00000521758		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
intron-3CDS	ENST00000545753	ENST00000397977		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
intron-intron	ENST00000545753	ENST00000521758		ChiTaRS3.1			BF951217	FOSL2	chr2	28636711	+	INTS10	chr8	19688033	+
Frame-shit	ENST00000397527	ENST00000322644		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
5CDS-intron	ENST00000397527	ENST00000572844		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
Frame-shit	ENST00000342580	ENST00000322644		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
5CDS-intron	ENST00000342580	ENST00000572844		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
intron-3CDS	ENST00000476146	ENST00000322644		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
intron-intron	ENST00000476146	ENST00000572844		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
intron-3CDS	ENST00000397524	ENST00000322644		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
intron-intron	ENST00000397524	ENST00000572844		ChiTaRS3.1			BF805544	CEP250	chr20	34095612	+	POLR2A	chr17	7416611	+
intron-3CDS	ENST00000299980	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000299980	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000299980	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-3CDS	ENST00000423132	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000423132	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000423132	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-3CDS	ENST00000433195	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000433195	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000433195	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-3CDS	ENST00000569748	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000569748	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000569748	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-3CDS	ENST00000393512	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000393512	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000393512	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-3CDS	ENST00000570297	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000570297	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000570297	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-3CDS	ENST00000564155	ENST00000284425		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-intron	ENST00000564155	ENST00000446604		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
intron-5UTR	ENST00000564155	ENST00000590645		ChiTaRS3.1			BG538229	AP1G1	chr16	71792315	-	ABCA6	chr17	67138015	-
In-frame	ENST00000422447	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000288828		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000401525		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000404704		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000485854		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000382384		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000484262		ChiTaRS3.1			BM049309	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000393923	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393923	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393923	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393923	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000412622	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000412622	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000412622	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000412622	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000431670	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000431670	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000431670	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000431670	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393925	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393925	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393925	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000393925	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000481953	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000481953	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000481953	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000481953	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000495180	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000495180	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000495180	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000495180	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000478922	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000478922	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000478922	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000478922	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000477695	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000477695	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000477695	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
5CDS-intron	ENST00000477695	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000470699	ENST00000553331		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000470699	ENST00000216832		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000470699	ENST00000556530		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-intron	ENST00000470699	ENST00000557680		ChiTaRS3.1			BI029782	PHLDB2	chr3	111603686	+	PNN	chr14	39650764	+
intron-3UTR	ENST00000217195	ENST00000279873		ChiTaRS3.1			BQ448040	C20orf27	chr20	3734288	+	ARID5B	chr10	63854482	-
intron-intron	ENST00000217195	ENST00000309334		ChiTaRS3.1			BQ448040	C20orf27	chr20	3734288	+	ARID5B	chr10	63854482	-
intron-3UTR	ENST00000379772	ENST00000279873		ChiTaRS3.1			BQ448040	C20orf27	chr20	3734288	+	ARID5B	chr10	63854482	-
intron-intron	ENST00000379772	ENST00000309334		ChiTaRS3.1			BQ448040	C20orf27	chr20	3734288	+	ARID5B	chr10	63854482	-
Frame-shit	ENST00000393386	ENST00000354725		ChiTaRS3.1			DA516298	PTPRZ1	chr7	121513614	+	SND1	chr7	127714553	+
5CDS-intron	ENST00000393386	ENST00000467238		ChiTaRS3.1			DA516298	PTPRZ1	chr7	121513614	+	SND1	chr7	127714553	+
Frame-shit	ENST00000449182	ENST00000354725		ChiTaRS3.1			DA516298	PTPRZ1	chr7	121513614	+	SND1	chr7	127714553	+
5CDS-intron	ENST00000449182	ENST00000467238		ChiTaRS3.1			DA516298	PTPRZ1	chr7	121513614	+	SND1	chr7	127714553	+
intron-3CDS	ENST00000483028	ENST00000354725		ChiTaRS3.1			DA516298	PTPRZ1	chr7	121513614	+	SND1	chr7	127714553	+
intron-intron	ENST00000483028	ENST00000467238		ChiTaRS3.1			DA516298	PTPRZ1	chr7	121513614	+	SND1	chr7	127714553	+
intron-intron	ENST00000399231	ENST00000361189		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000399231	ENST00000361557		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000399231	ENST00000511624		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000356338	ENST00000361189		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000356338	ENST00000361557		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000356338	ENST00000511624		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000358212	ENST00000361189		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000358212	ENST00000361557		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000358212	ENST00000511624		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000399233	ENST00000361189		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000399233	ENST00000361557		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000399233	ENST00000511624		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000553916	ENST00000361189		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000553916	ENST00000361557		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-intron	ENST00000553916	ENST00000511624		ChiTaRS3.1			Z22957	MYO5A	chr15	52622637	-	PJA2	chr5	108674622	-
intron-5UTR	ENST00000371746	ENST00000378600		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000378603		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000256996		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371746	ENST00000378601		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378600		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378603		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000256996		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
intron-5UTR	ENST00000371748	ENST00000378601		ChiTaRS3.1			BE255970	LHX3	chr9	139088465	-	DDB2	chr11	47236571	+
3UTR-3CDS	ENST00000526767	ENST00000319481		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-3CDS	ENST00000526767	ENST00000399443		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-3CDS	ENST00000526767	ENST00000357041		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-intron	ENST00000526767	ENST00000399441		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-intron	ENST00000526767	ENST00000582618		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
intron-3CDS	ENST00000530128	ENST00000319481		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
intron-3CDS	ENST00000530128	ENST00000399443		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
intron-3CDS	ENST00000530128	ENST00000357041		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
intron-intron	ENST00000530128	ENST00000399441		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
intron-intron	ENST00000530128	ENST00000582618		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-3CDS	ENST00000381057	ENST00000319481		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-3CDS	ENST00000381057	ENST00000399443		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-3CDS	ENST00000381057	ENST00000357041		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-intron	ENST00000381057	ENST00000399441		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
3UTR-intron	ENST00000381057	ENST00000582618		ChiTaRS3.1			BP334921	HTN3	chr4	70902122	+	OSBPL1A	chr18	21776127	-
intron-intron	ENST00000297785	ENST00000507810		ChiTaRS3.1			BF436998	ALDH1A1	chr9	75515857	+	EPB41L4A	chr5	111754705	+
intron-intron	ENST00000297785	ENST00000261486		ChiTaRS3.1			BF436998	ALDH1A1	chr9	75515857	+	EPB41L4A	chr5	111754705	+
intron-intron	ENST00000376939	ENST00000507810		ChiTaRS3.1			BF436998	ALDH1A1	chr9	75515857	+	EPB41L4A	chr5	111754705	+
intron-intron	ENST00000376939	ENST00000261486		ChiTaRS3.1			BF436998	ALDH1A1	chr9	75515857	+	EPB41L4A	chr5	111754705	+
intron-intron	ENST00000482210	ENST00000507810		ChiTaRS3.1			BF436998	ALDH1A1	chr9	75515857	+	EPB41L4A	chr5	111754705	+
intron-intron	ENST00000482210	ENST00000261486		ChiTaRS3.1			BF436998	ALDH1A1	chr9	75515857	+	EPB41L4A	chr5	111754705	+
3UTR-3CDS	ENST00000380629	ENST00000368653		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
3UTR-3CDS	ENST00000380629	ENST00000368654		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
3UTR-intron	ENST00000380629	ENST00000484853		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-3CDS	ENST00000523515	ENST00000368653		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-3CDS	ENST00000523515	ENST00000368654		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-intron	ENST00000523515	ENST00000484853		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-3CDS	ENST00000520409	ENST00000368653		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-3CDS	ENST00000520409	ENST00000368654		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-intron	ENST00000520409	ENST00000484853		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
3UTR-3CDS	ENST00000518611	ENST00000368653		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
3UTR-3CDS	ENST00000518611	ENST00000368654		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
3UTR-intron	ENST00000518611	ENST00000484853		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-3CDS	ENST00000521254	ENST00000368653		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-3CDS	ENST00000521254	ENST00000368654		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
intron-intron	ENST00000521254	ENST00000484853		ChiTaRS3.1			T96127	BNIP3L	chr8	26268254	-	MKI67	chr10	129906767	+
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			BU955765	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
intron-3CDS	ENST00000513929	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
intron-3CDS	ENST00000513929	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
intron-3CDS	ENST00000513929	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
intron-intron	ENST00000513929	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000253144	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000253144	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000253144	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000253144	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000511593	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000511593	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000511593	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000511593	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000449416	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000449416	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000449416	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000449416	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000411977	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000411977	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000411977	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000411977	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000511154	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000511154	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000511154	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000511154	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000513999	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000513999	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000513999	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000513999	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000512387	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000512387	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000512387	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000512387	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000513265	ENST00000358220		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000513265	ENST00000381329		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
In-frame	ENST00000513265	ENST00000263150		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
5CDS-intron	ENST00000513265	ENST00000482165		ChiTaRS3.1			DB086777	ZNF331	chr19	54074984	+	WDR37	chr10	1125950	+
intron-5UTR	ENST00000532636	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000532636	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000532636	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000533540	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000533540	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000533540	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000453788	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000453788	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000453788	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000534624	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000534624	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000534624	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000227378	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000227378	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000227378	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000534319	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000534319	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000534319	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000526110	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000526110	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000526110	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-5UTR	ENST00000526862	ENST00000388968		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000526862	ENST00000345042		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
intron-intron	ENST00000526862	ENST00000544407		ChiTaRS3.1			DB195849	HSPA8	chr11	122930042	-	HSPD1	chr2	198364590	-
5CDS-5UTR	ENST00000339514	ENST00000341329		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000339514	ENST00000392062		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000339514	ENST00000409053		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000339514	ENST00000493526		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000392318	ENST00000341329		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000392318	ENST00000392062		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000392318	ENST00000409053		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000392318	ENST00000493526		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000304164	ENST00000341329		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000304164	ENST00000392062		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000304164	ENST00000409053		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000304164	ENST00000493526		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000392316	ENST00000341329		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-5UTR	ENST00000392316	ENST00000392062		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000392316	ENST00000409053		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
5CDS-intron	ENST00000392316	ENST00000493526		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-5UTR	ENST00000439065	ENST00000341329		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-5UTR	ENST00000439065	ENST00000392062		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-intron	ENST00000439065	ENST00000409053		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-intron	ENST00000439065	ENST00000493526		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-5UTR	ENST00000496992	ENST00000341329		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-5UTR	ENST00000496992	ENST00000392062		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-intron	ENST00000496992	ENST00000409053		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-intron	ENST00000496992	ENST00000493526		ChiTaRS3.1			DA642718	MYO1B	chr2	192160954	+	RHBDD1	chr2	227729320	+
intron-intron	ENST00000357393	ENST00000188790		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000357393	ENST00000443424		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000357393	ENST00000493182		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000370001	ENST00000188790		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000370001	ENST00000443424		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000370001	ENST00000493182		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000477908	ENST00000188790		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000477908	ENST00000443424		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000477908	ENST00000493182		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000369994	ENST00000188790		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000369994	ENST00000443424		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000369994	ENST00000493182		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000369995	ENST00000188790		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000369995	ENST00000443424		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000369995	ENST00000493182		ChiTaRS3.1			BC002939	AKNAD1	chr1	109474608	-	FAP	chr2	163053526	-
intron-intron	ENST00000240922	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000240922	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000240922	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000240922	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000477813	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000477813	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000477813	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000477813	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497525	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497525	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497525	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497525	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497255	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497255	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497255	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000497255	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493454	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493454	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493454	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493454	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493900	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493900	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493900	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000493900	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000467022	ENST00000484834		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000467022	ENST00000367229		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000467022	ENST00000255427		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000467022	ENST00000535569		ChiTaRS3.1			BP305867	NAA50	chr3	113442329	-	CHIT1	chr1	203198796	-
intron-intron	ENST00000522693	ENST00000522693		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000522693	ENST00000523175		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000522693	ENST00000339252		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000522693	ENST00000544197		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000522693	ENST00000425854		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000522693	ENST00000517644		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000523175	ENST00000522693		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000523175	ENST00000523175		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000523175	ENST00000339252		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000523175	ENST00000544197		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000523175	ENST00000425854		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000523175	ENST00000517644		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000339252	ENST00000522693		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000339252	ENST00000523175		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000339252	ENST00000339252		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000339252	ENST00000544197		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000339252	ENST00000425854		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000339252	ENST00000517644		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000544197	ENST00000522693		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000544197	ENST00000523175		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000544197	ENST00000339252		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000544197	ENST00000544197		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000544197	ENST00000425854		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000544197	ENST00000517644		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000425854	ENST00000522693		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000425854	ENST00000523175		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000425854	ENST00000339252		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000425854	ENST00000544197		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-5UTR	ENST00000425854	ENST00000425854		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
intron-intron	ENST00000425854	ENST00000517644		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-intron	ENST00000517644	ENST00000522693		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-intron	ENST00000517644	ENST00000523175		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-5UTR	ENST00000517644	ENST00000339252		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-intron	ENST00000517644	ENST00000544197		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-5UTR	ENST00000517644	ENST00000425854		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-intron	ENST00000517644	ENST00000517644		ChiTaRS3.1			AW604191	HAVCR1	chr5	156456751	-	HAVCR1	chr5	156485308	-
5CDS-intron	ENST00000375114	ENST00000540235		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000375114	ENST00000393930		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000375114	ENST00000393931		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000375114	ENST00000310706		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000246194	ENST00000540235		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000246194	ENST00000393930		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000246194	ENST00000393931		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
5CDS-intron	ENST00000246194	ENST00000310706		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
intron-intron	ENST00000493399	ENST00000540235		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
intron-intron	ENST00000493399	ENST00000393930		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
intron-intron	ENST00000493399	ENST00000393931		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
intron-intron	ENST00000493399	ENST00000310706		ChiTaRS3.1			BG035867	RALY	chr20	32664865	+	JUP	chr17	39845246	+
intron-3CDS	ENST00000373313	ENST00000302313		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000373313	ENST00000418020		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000373313	ENST00000544962		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000373313	ENST00000396258		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3UTR	ENST00000373313	ENST00000466405		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000302313		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000418020		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000544962		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000396258		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3UTR	ENST00000396967	ENST00000466405		ChiTaRS3.1			DA693159	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-intron	ENST00000341533	ENST00000378164		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000341533	ENST00000519355		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000417955	ENST00000378164		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000417955	ENST00000519355		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000465647	ENST00000378164		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000465647	ENST00000519355		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000455523	ENST00000378164		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000455523	ENST00000519355		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000427257	ENST00000378164		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-intron	ENST00000427257	ENST00000519355		ChiTaRS3.1			BQ319708	NAPEPLD	chr7	102740415	-	TAF2	chr8	120830891	+
intron-3CDS	ENST00000256861	ENST00000574876		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000256861	ENST00000572293		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000256861	ENST00000269230		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000256861	ENST00000301396		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000256861	ENST00000436683		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-intron	ENST00000256861	ENST00000570823		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397146	ENST00000574876		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397146	ENST00000572293		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397146	ENST00000269230		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397146	ENST00000301396		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397146	ENST00000436683		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-intron	ENST00000397146	ENST00000570823		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000298441	ENST00000574876		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000298441	ENST00000572293		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000298441	ENST00000269230		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000298441	ENST00000301396		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000298441	ENST00000436683		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-intron	ENST00000298441	ENST00000570823		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000446830	ENST00000574876		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000446830	ENST00000572293		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000446830	ENST00000269230		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000446830	ENST00000301396		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000446830	ENST00000436683		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-intron	ENST00000446830	ENST00000570823		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000434980	ENST00000574876		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000434980	ENST00000572293		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000434980	ENST00000269230		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000434980	ENST00000301396		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000434980	ENST00000436683		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-intron	ENST00000434980	ENST00000570823		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397145	ENST00000574876		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397145	ENST00000572293		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397145	ENST00000269230		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397145	ENST00000301396		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3CDS	ENST00000397145	ENST00000436683		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-intron	ENST00000397145	ENST00000570823		ChiTaRS3.1			AW948496	ITIH5	chr10	7618918	-	PELP1	chr17	4578639	-
intron-3UTR	ENST00000524555	ENST00000445755		ChiTaRS3.1			BG568194	SAA2-SAA4	chr11	18266897	-	CCDC124	chr19	18054699	+
intron-3UTR	ENST00000524555	ENST00000597436		ChiTaRS3.1			BG568194	SAA2-SAA4	chr11	18266897	-	CCDC124	chr19	18054699	+
intron-3UTR	ENST00000304863	ENST00000367607		ChiTaRS3.1			BM762485	UQCRFS1	chr19	29703962	-	CEP350	chr1	180082113	+
intron-intron	ENST00000304863	ENST00000490141		ChiTaRS3.1			BM762485	UQCRFS1	chr19	29703962	-	CEP350	chr1	180082113	+
5CDS-5UTR	ENST00000554546	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000554546	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000554546	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554546	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000356296	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000356296	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000356296	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000557597	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000557597	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000557597	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000555238	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000555238	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555238	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000355058	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000355058	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000355058	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000359560	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000359560	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000359560	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000555394	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000555394	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555394	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000454166	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000454166	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000454166	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000544991	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000544991	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000544991	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000560335	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000560335	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000560335	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000555738	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000555738	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000555738	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000559312	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000559312	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000559312	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000554521	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000554521	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000554521	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000535282	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-intron	ENST00000535282	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
5CDS-5UTR	ENST00000535282	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-intron	ENST00000556600	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-intron	ENST00000556600	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556600	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000591471		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-intron	ENST00000556772	ENST00000589218		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-intron	ENST00000556772	ENST00000544914		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000591417		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000592168		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000392153		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000589392		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000324411		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000591259		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000541583		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000591134		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
intron-5UTR	ENST00000556772	ENST00000586897		ChiTaRS3.1			DB209535	NUMB	chr14	73789837	-	HKR1	chr19	37838092	+
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BQ681672	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BQ681672	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
intron-5UTR	ENST00000503238	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000503238	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000503238	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000503238	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000358350	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000358350	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000358350	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000358350	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000537810	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000537810	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000537810	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000537810	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000264319	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000264319	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000264319	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000264319	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507711	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507711	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507711	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507711	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000514783	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000514783	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000514783	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000514783	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507873	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507873	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507873	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000507873	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000506685	ENST00000536668		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000506685	ENST00000544994		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000506685	ENST00000228811		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-5UTR	ENST00000506685	ENST00000540107		ChiTaRS3.1			AK128543	FRYL	chr4	48517226	-	PRR4	chr12	10999719	-
intron-3UTR	ENST00000300134	ENST00000397821		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000300134	ENST00000379716		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000300134	ENST00000379698		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000300134	ENST00000541422		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000300134	ENST00000379697		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000300134	ENST00000477102		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000538913	ENST00000397821		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000538913	ENST00000379716		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000538913	ENST00000379698		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000538913	ENST00000541422		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000538913	ENST00000379697		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000538913	ENST00000477102		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000543873	ENST00000397821		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000543873	ENST00000379716		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000543873	ENST00000379698		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000543873	ENST00000541422		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000543873	ENST00000379697		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000543873	ENST00000477102		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000556155	ENST00000397821		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000556155	ENST00000379716		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000556155	ENST00000379698		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000556155	ENST00000541422		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000556155	ENST00000379697		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000556155	ENST00000477102		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000537215	ENST00000397821		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000537215	ENST00000379716		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000537215	ENST00000379698		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000537215	ENST00000541422		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000537215	ENST00000379697		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000537215	ENST00000477102		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000454075	ENST00000397821		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000454075	ENST00000379716		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000454075	ENST00000379698		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3UTR	ENST00000454075	ENST00000541422		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000454075	ENST00000379697		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-intron	ENST00000454075	ENST00000477102		ChiTaRS3.1			W02736	STAT6	chr12	57489636	-	SH3KBP1	chrX	19554336	-
intron-3CDS	ENST00000318522	ENST00000389048		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000402711	ENST00000389048		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000482660	ENST00000389048		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
In-frame	ENST00000401738	ENST00000389048		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000453191	ENST00000389048		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
intron-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			EU236948	EML4	chr2	42492091	+	ALK	chr2	29446396	-
5UTR-3CDS	ENST00000381602	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381602	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381602	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397962	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397962	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000309776	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000309776	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000509513	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000509513	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397959	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397959	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000381591	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000381591	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000403354	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000403354	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381607	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381607	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000402736	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000402736	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000602682	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000602682	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381604	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381604	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381584	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381584	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000558098	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000558098	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000545619	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000545619	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000535374	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000535374	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000344646		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374366		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374371		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000473115	ENST00000374370		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000473115	ENST00000335258		ChiTaRS3.1			BI457833	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3UTR	ENST00000338338	ENST00000534336		ChiTaRS3.1			CA426646	AURKAIP1	chr1	1309586	+	MALAT1	chr11	65268245	-
intron-3UTR	ENST00000338370	ENST00000534336		ChiTaRS3.1			CA426646	AURKAIP1	chr1	1309586	+	MALAT1	chr11	65268245	-
intron-3UTR	ENST00000321751	ENST00000534336		ChiTaRS3.1			CA426646	AURKAIP1	chr1	1309586	+	MALAT1	chr11	65268245	-
intron-3UTR	ENST00000378853	ENST00000534336		ChiTaRS3.1			CA426646	AURKAIP1	chr1	1309586	+	MALAT1	chr11	65268245	-
intron-3UTR	ENST00000489799	ENST00000534336		ChiTaRS3.1			CA426646	AURKAIP1	chr1	1309586	+	MALAT1	chr11	65268245	-
intron-3CDS	ENST00000498289	ENST00000216281		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000498289	ENST00000334701		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000498289	ENST00000441629		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-intron	ENST00000498289	ENST00000558600		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000413811	ENST00000216281		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000413811	ENST00000334701		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000413811	ENST00000441629		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-intron	ENST00000413811	ENST00000558600		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-3CDS	ENST00000359326	ENST00000216281		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-3CDS	ENST00000359326	ENST00000334701		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-3CDS	ENST00000359326	ENST00000441629		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-intron	ENST00000359326	ENST00000558600		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000456684	ENST00000216281		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000456684	ENST00000334701		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-3CDS	ENST00000456684	ENST00000441629		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
intron-intron	ENST00000456684	ENST00000558600		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-3CDS	ENST00000286031	ENST00000216281		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-3CDS	ENST00000286031	ENST00000334701		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-3CDS	ENST00000286031	ENST00000441629		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-intron	ENST00000286031	ENST00000558600		ChiTaRS3.1			AI077524	C1orf112	chr1	169822631	+	HSP90AA1	chr14	102549604	+
3UTR-intron	ENST00000439590	ENST00000303113		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000439590	ENST00000453626		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000439590	ENST00000303071		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000439590	ENST00000432378		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000311111	ENST00000303113		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000311111	ENST00000453626		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000311111	ENST00000303071		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000311111	ENST00000432378		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000584577	ENST00000303113		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000584577	ENST00000453626		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000584577	ENST00000303071		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000584577	ENST00000432378		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
intron-intron	ENST00000534490	ENST00000303113		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
intron-intron	ENST00000534490	ENST00000453626		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
intron-intron	ENST00000534490	ENST00000303071		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
intron-intron	ENST00000534490	ENST00000432378		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000533498	ENST00000303113		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000533498	ENST00000453626		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000533498	ENST00000303071		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
3UTR-intron	ENST00000533498	ENST00000432378		ChiTaRS3.1			BE797621	RPL38	chr17	72206008	+	DONSON	chr21	35281514	-
intron-3CDS	ENST00000216281	ENST00000446488		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000216281	ENST00000304521		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000216281	ENST00000524794		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000216281	ENST00000524746		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-intron	ENST00000216281	ENST00000526940		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000334701	ENST00000446488		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000334701	ENST00000304521		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000334701	ENST00000524794		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000334701	ENST00000524746		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-intron	ENST00000334701	ENST00000526940		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000441629	ENST00000446488		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000441629	ENST00000304521		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000441629	ENST00000524794		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000441629	ENST00000524746		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-intron	ENST00000441629	ENST00000526940		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000558600	ENST00000446488		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000558600	ENST00000304521		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000558600	ENST00000524794		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3CDS	ENST00000558600	ENST00000524746		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-intron	ENST00000558600	ENST00000526940		ChiTaRS3.1			AU143249	HSP90AA1	chr14	102548486	-	NFRKB	chr11	129752452	-
intron-3UTR	ENST00000550241	ENST00000447654		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000550241	ENST00000401473		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000550241	ENST00000311487		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000550241	ENST00000347617		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000550241	ENST00000395004		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-intron	ENST00000550241	ENST00000478214		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000550241	ENST00000374116		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000602871	ENST00000447654		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000602871	ENST00000401473		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000602871	ENST00000311487		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000602871	ENST00000347617		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000602871	ENST00000395004		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-intron	ENST00000602871	ENST00000478214		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000602871	ENST00000374116		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000394349	ENST00000447654		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000394349	ENST00000401473		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000394349	ENST00000311487		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000394349	ENST00000347617		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000394349	ENST00000395004		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-intron	ENST00000394349	ENST00000478214		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000394349	ENST00000374116		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000549164	ENST00000447654		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000549164	ENST00000401473		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000549164	ENST00000311487		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000549164	ENST00000347617		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000549164	ENST00000395004		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-intron	ENST00000549164	ENST00000478214		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000549164	ENST00000374116		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000338662	ENST00000447654		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000338662	ENST00000401473		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000338662	ENST00000311487		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000338662	ENST00000347617		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000338662	ENST00000395004		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-intron	ENST00000338662	ENST00000478214		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
intron-3UTR	ENST00000338662	ENST00000374116		ChiTaRS3.1			CD369703	ATP5G2	chr12	54059142	+	HMGA1	chr6	34213611	-
3UTR-intron	ENST00000391736	ENST00000588752		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391736	ENST00000589238		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391736	ENST00000269159		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391736	ENST00000588927		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
intron-intron	ENST00000461839	ENST00000588752		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
intron-intron	ENST00000461839	ENST00000589238		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
intron-intron	ENST00000461839	ENST00000269159		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
intron-intron	ENST00000461839	ENST00000588927		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000270452	ENST00000588752		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000270452	ENST00000589238		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000270452	ENST00000269159		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000270452	ENST00000588927		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000430952	ENST00000588752		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000430952	ENST00000589238		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000430952	ENST00000269159		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000430952	ENST00000588927		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391734	ENST00000588752		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391734	ENST00000589238		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391734	ENST00000269159		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391734	ENST00000588927		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391733	ENST00000588752		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391733	ENST00000589238		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391733	ENST00000269159		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-intron	ENST00000391733	ENST00000588927		ChiTaRS3.1			AA593969	LILRB4	chr19	55179589	-	IMPA2	chr18	12030454	-
3UTR-3UTR	ENST00000264832	ENST00000233143		ChiTaRS3.1			AA193647	ICAM1	chr19	10397205	+	TMSB10	chr2	85133715	+
intron-3UTR	ENST00000423829	ENST00000233143		ChiTaRS3.1			AA193647	ICAM1	chr19	10397205	+	TMSB10	chr2	85133715	+
intron-3UTR	ENST00000585443	ENST00000233143		ChiTaRS3.1			AA193647	ICAM1	chr19	10397205	+	TMSB10	chr2	85133715	+
intron-3UTR	ENST00000533902	ENST00000539261		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000533902	ENST00000228938		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000280258	ENST00000539261		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000280258	ENST00000228938		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000441050	ENST00000539261		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000441050	ENST00000228938		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000531521	ENST00000539261		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
intron-3UTR	ENST00000531521	ENST00000228938		ChiTaRS3.1			BC025750	PRSS23	chr11	86662044	-	MGP	chr12	15034942	-
3UTR-intron	ENST00000534336	ENST00000548589		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000552699		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000267115		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000549385		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000423828		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000395006		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-intron	ENST00000534336	ENST00000547798		ChiTaRS3.1			BE079562	MALAT1	chr11	65269351	+	TMBIM6	chr12	50152546	-
3UTR-3CDS	ENST00000544033	ENST00000369981		ChiTaRS3.1			DB455191	LINC00202-2	chr10	26932525	+	MYO6	chr6	76558066	+
3UTR-3CDS	ENST00000544033	ENST00000369985		ChiTaRS3.1			DB455191	LINC00202-2	chr10	26932525	+	MYO6	chr6	76558066	+
3UTR-3CDS	ENST00000544033	ENST00000369977		ChiTaRS3.1			DB455191	LINC00202-2	chr10	26932525	+	MYO6	chr6	76558066	+
3UTR-3CDS	ENST00000544033	ENST00000369975		ChiTaRS3.1			DB455191	LINC00202-2	chr10	26932525	+	MYO6	chr6	76558066	+
3UTR-intron	ENST00000544033	ENST00000462633		ChiTaRS3.1			DB455191	LINC00202-2	chr10	26932525	+	MYO6	chr6	76558066	+
intron-5UTR	ENST00000572173	ENST00000264167		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000572173	ENST00000409888		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000572992	ENST00000264167		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000572992	ENST00000409888		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000381820	ENST00000264167		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000381820	ENST00000409888		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000312499	ENST00000264167		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000312499	ENST00000409888		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000576027	ENST00000264167		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
intron-5UTR	ENST00000576027	ENST00000409888		ChiTaRS3.1			DB074890	RMI2	chr16	11374744	-	AGPS	chr2	178257504	+
5CDS-intron	ENST00000262960	ENST00000407690		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407431		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407148		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000405938		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000496523		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407690		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407431		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407148		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000405938		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000496523		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407690		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407431		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407148		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000405938		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000496523		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407690		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407431		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407148		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000405938		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000496523		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407690		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407431		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407148		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000405938		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000496523		ChiTaRS3.1			BF691567	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5UTR-5UTR	ENST00000368882	ENST00000237289		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5UTR-intron	ENST00000368882	ENST00000485192		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5CDS-5UTR	ENST00000368885	ENST00000237289		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5CDS-intron	ENST00000368885	ENST00000485192		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5CDS-5UTR	ENST00000451850	ENST00000237289		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5CDS-intron	ENST00000451850	ENST00000485192		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5CDS-5UTR	ENST00000368877	ENST00000237289		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
5CDS-intron	ENST00000368877	ENST00000485192		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
intron-5UTR	ENST00000368876	ENST00000237289		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
intron-intron	ENST00000368876	ENST00000485192		ChiTaRS3.1			CR992767	AMD1	chr6	111196421	+	TNFAIP3	chr6	138192348	+
Frame-shit	ENST00000450253	ENST00000296328		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000450253	ENST00000428095		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000450253	ENST00000535858		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
Frame-shit	ENST00000280892	ENST00000296328		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000280892	ENST00000428095		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000280892	ENST00000535858		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
In-frame	ENST00000504432	ENST00000296328		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000504432	ENST00000428095		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000504432	ENST00000535858		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
Frame-shit	ENST00000505992	ENST00000296328		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000505992	ENST00000428095		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5CDS-intron	ENST00000505992	ENST00000535858		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5UTR-3CDS	ENST00000504472	ENST00000296328		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5UTR-intron	ENST00000504472	ENST00000428095		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
5UTR-intron	ENST00000504472	ENST00000535858		ChiTaRS3.1			DA724990	EIF4E	chr4	99823025	-	UBXN7	chr3	196134267	-
Frame-shit	ENST00000279873	ENST00000356231		ChiTaRS3.1			AA341453	ARID5B	chr10	63850937	+	CDAN1	chr15	43017419	-
Frame-shit	ENST00000309334	ENST00000356231		ChiTaRS3.1			AA341453	ARID5B	chr10	63850937	+	CDAN1	chr15	43017419	-
5CDS-intron	ENST00000256442	ENST00000301831		ChiTaRS3.1			BI042339	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
5CDS-intron	ENST00000256442	ENST00000420927		ChiTaRS3.1			BI042339	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
5CDS-intron	ENST00000256442	ENST00000489118		ChiTaRS3.1			BI042339	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
5CDS-intron	ENST00000256442	ENST00000414606		ChiTaRS3.1			BI042339	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
intron-3UTR	ENST00000264414	ENST00000296666		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000264414	ENST00000442138		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000264414	ENST00000512635		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000264414	ENST00000513427		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-3UTR	ENST00000344951	ENST00000296666		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000344951	ENST00000442138		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000344951	ENST00000512635		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000344951	ENST00000513427		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-3UTR	ENST00000409096	ENST00000296666		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000409096	ENST00000442138		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000409096	ENST00000512635		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000409096	ENST00000513427		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-3UTR	ENST00000409777	ENST00000296666		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000409777	ENST00000442138		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000409777	ENST00000512635		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000409777	ENST00000513427		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-3UTR	ENST00000432260	ENST00000296666		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000432260	ENST00000442138		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000432260	ENST00000512635		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-intron	ENST00000432260	ENST00000513427		ChiTaRS3.1			DA731200	CUL3	chr2	225339044	-	PRRC1	chr5	126888855	+
intron-5UTR	ENST00000431446	ENST00000220659		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000431446	ENST00000520601		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000431446	ENST00000521170		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-5UTR	ENST00000496459	ENST00000220659		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000496459	ENST00000520601		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000496459	ENST00000521170		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-5UTR	ENST00000570135	ENST00000220659		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000570135	ENST00000520601		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000570135	ENST00000521170		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-5UTR	ENST00000320676	ENST00000220659		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000320676	ENST00000520601		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000320676	ENST00000521170		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-5UTR	ENST00000562646	ENST00000220659		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000562646	ENST00000520601		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000562646	ENST00000521170		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-5UTR	ENST00000565438	ENST00000220659		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000565438	ENST00000520601		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
intron-intron	ENST00000565438	ENST00000521170		ChiTaRS3.1			DA076836	RBMX	chrX	135961359	-	BRF2	chr8	37707381	-
3UTR-3CDS	ENST00000294889	ENST00000251241		ChiTaRS3.1			BI033174	C1orf115	chr1	220871339	+	DHX40	chr17	57676766	+
3UTR-3CDS	ENST00000294889	ENST00000451169		ChiTaRS3.1			BI033174	C1orf115	chr1	220871339	+	DHX40	chr17	57676766	+
3UTR-3CDS	ENST00000294889	ENST00000425628		ChiTaRS3.1			BI033174	C1orf115	chr1	220871339	+	DHX40	chr17	57676766	+
intron-3UTR	ENST00000472200	ENST00000382582		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-3UTR	ENST00000472200	ENST00000355994		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-3UTR	ENST00000472200	ENST00000397875		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-3UTR	ENST00000472200	ENST00000397866		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-3UTR	ENST00000472200	ENST00000397865		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000527041		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000359645		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000528160		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000397869		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000354542		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000526111		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000580402		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000579129		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000578193		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000397863		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000397860		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-intron	ENST00000472200	ENST00000487778		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000446465	ENST00000382582		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000446465	ENST00000355994		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000446465	ENST00000397875		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000446465	ENST00000397866		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000446465	ENST00000397865		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000527041		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000359645		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000528160		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000397869		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000354542		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000526111		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000580402		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000579129		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000578193		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000397863		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000397860		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000446465	ENST00000487778		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000393079	ENST00000382582		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000393079	ENST00000355994		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000393079	ENST00000397875		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000393079	ENST00000397866		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-3UTR	ENST00000393079	ENST00000397865		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000527041		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000359645		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000528160		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000397869		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000354542		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000526111		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000580402		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000579129		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000578193		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000397863		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000397860		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
5CDS-intron	ENST00000393079	ENST00000487778		ChiTaRS3.1			AA348465	SLC35G2	chr3	136574249	+	MBP	chr18	74691260	-
intron-3CDS	ENST00000540900	ENST00000246337		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3UTR	ENST00000540900	ENST00000494399		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3CDS	ENST00000584423	ENST00000246337		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3UTR	ENST00000584423	ENST00000494399		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3CDS	ENST00000247026	ENST00000246337		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3UTR	ENST00000247026	ENST00000494399		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3CDS	ENST00000479218	ENST00000246337		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3UTR	ENST00000479218	ENST00000494399		ChiTaRS3.1			BU157543	NSRP1	chr17	28503625	-	UROD	chr1	45478873	+
intron-3CDS	ENST00000319359	ENST00000157812		ChiTaRS3.1			BQ219974	ELL3	chr15	44086239	+	PSMC4	chr19	40480336	+
intron-3CDS	ENST00000319359	ENST00000455878		ChiTaRS3.1			BQ219974	ELL3	chr15	44086239	+	PSMC4	chr19	40480336	+
intron-3CDS	ENST00000497465	ENST00000157812		ChiTaRS3.1			BQ219974	ELL3	chr15	44086239	+	PSMC4	chr19	40480336	+
intron-3CDS	ENST00000497465	ENST00000455878		ChiTaRS3.1			BQ219974	ELL3	chr15	44086239	+	PSMC4	chr19	40480336	+
intron-5UTR	ENST00000313486	ENST00000464611		ChiTaRS3.1			BQ321009	PITPNA	chr17	1444890	-	ACTB	chr7	5567674	-
intron-5UTR	ENST00000313486	ENST00000331789		ChiTaRS3.1			BQ321009	PITPNA	chr17	1444890	-	ACTB	chr7	5567674	-
intron-5UTR	ENST00000539476	ENST00000464611		ChiTaRS3.1			BQ321009	PITPNA	chr17	1444890	-	ACTB	chr7	5567674	-
intron-5UTR	ENST00000539476	ENST00000331789		ChiTaRS3.1			BQ321009	PITPNA	chr17	1444890	-	ACTB	chr7	5567674	-
intron-3UTR	ENST00000396891	ENST00000216281		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-3UTR	ENST00000396891	ENST00000334701		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-intron	ENST00000396891	ENST00000441629		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-intron	ENST00000396891	ENST00000558600		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-3UTR	ENST00000356950	ENST00000216281		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-3UTR	ENST00000356950	ENST00000334701		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-intron	ENST00000356950	ENST00000441629		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
intron-intron	ENST00000356950	ENST00000558600		ChiTaRS3.1			BM741320	HIST1H2BK	chr6	27114143	-	HSP90AA1	chr14	102547677	-
5CDS-5UTR	ENST00000318008	ENST00000448587		ChiTaRS3.1			AL365412	LASP1	chr17	37070688	+	TINCR	chr19	5559039	-
5CDS-5UTR	ENST00000433206	ENST00000448587		ChiTaRS3.1			AL365412	LASP1	chr17	37070688	+	TINCR	chr19	5559039	-
5CDS-5UTR	ENST00000435347	ENST00000448587		ChiTaRS3.1			AL365412	LASP1	chr17	37070688	+	TINCR	chr19	5559039	-
intron-3CDS	ENST00000311330	ENST00000172229		ChiTaRS3.1			AW204995	CD248	chr11	66082056	+	NGFR	chr17	47587838	-
intron-3CDS	ENST00000311330	ENST00000504201		ChiTaRS3.1			AW204995	CD248	chr11	66082056	+	NGFR	chr17	47587838	-
In-frame	ENST00000301819	ENST00000327430		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000301819	ENST00000317492		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000301819	ENST00000538754		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000301819	ENST00000450879		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000431162	ENST00000327430		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000431162	ENST00000317492		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000431162	ENST00000538754		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000431162	ENST00000450879		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000440121	ENST00000327430		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000440121	ENST00000317492		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000440121	ENST00000538754		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
In-frame	ENST00000440121	ENST00000450879		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
3UTR-3CDS	ENST00000493856	ENST00000327430		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
3UTR-3CDS	ENST00000493856	ENST00000317492		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
3UTR-3CDS	ENST00000493856	ENST00000538754		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
3UTR-3CDS	ENST00000493856	ENST00000450879		ChiTaRS3.1			AW450316	TTC21A	chr3	39180277	-	SALL2	chr14	21993571	+
intron-3UTR	ENST00000406396	ENST00000263097		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000406396	ENST00000606983		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000406396	ENST00000348419		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-intron	ENST00000406396	ENST00000565096		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-intron	ENST00000406396	ENST00000562958		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000589592	ENST00000263097		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000589592	ENST00000606983		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000589592	ENST00000348419		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-intron	ENST00000589592	ENST00000565096		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-intron	ENST00000589592	ENST00000562958		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000326575	ENST00000263097		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000326575	ENST00000606983		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-3UTR	ENST00000326575	ENST00000348419		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-intron	ENST00000326575	ENST00000565096		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
intron-intron	ENST00000326575	ENST00000562958		ChiTaRS3.1			AA258694	KDSR	chr18	60996006	-	CNN2	chr19	1038784	+
3UTR-3UTR	ENST00000270792	ENST00000368533		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-5UTR	ENST00000270792	ENST00000469717		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000270792	ENST00000330188		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000270792	ENST00000341485		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000270792	ENST00000341372		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000270792	ENST00000328159		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000270792	ENST00000271850		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000270792	ENST00000302206		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000270792	ENST00000368531		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000270792	ENST00000323144		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000270792	ENST00000368530		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000319041	ENST00000368533		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-5UTR	ENST00000319041	ENST00000469717		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000319041	ENST00000330188		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000319041	ENST00000341485		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000319041	ENST00000341372		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000319041	ENST00000328159		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000319041	ENST00000271850		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000319041	ENST00000302206		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000319041	ENST00000368531		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000319041	ENST00000323144		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-intron	ENST00000319041	ENST00000368530		ChiTaRS3.1			CA417208	SH3BGRL3	chr1	26607746	-	TPM3	chr1	154130055	+
3UTR-3UTR	ENST00000370179	ENST00000318217		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
3UTR-3UTR	ENST00000370179	ENST00000394649		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
3UTR-intron	ENST00000370179	ENST00000579584		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
3UTR-intron	ENST00000370179	ENST00000584232		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
3UTR-intron	ENST00000370179	ENST00000583621		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-3UTR	ENST00000370177	ENST00000318217		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-3UTR	ENST00000370177	ENST00000394649		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-intron	ENST00000370177	ENST00000579584		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-intron	ENST00000370177	ENST00000584232		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-intron	ENST00000370177	ENST00000583621		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-3UTR	ENST00000473620	ENST00000318217		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-3UTR	ENST00000473620	ENST00000394649		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-intron	ENST00000473620	ENST00000579584		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-intron	ENST00000473620	ENST00000584232		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
intron-intron	ENST00000473620	ENST00000583621		ChiTaRS3.1			AA532861	PPDPF	chr20	62153364	-	MYO1D	chr17	30820386	+
5CDS-5UTR	ENST00000243563	ENST00000373586		ChiTaRS3.1			AU123912	SNRPA	chr19	41265371	+	EIF3I	chr1	32688010	+
5CDS-intron	ENST00000243563	ENST00000471486		ChiTaRS3.1			AU123912	SNRPA	chr19	41265371	+	EIF3I	chr1	32688010	+
3UTR-5UTR	ENST00000599570	ENST00000373586		ChiTaRS3.1			AU123912	SNRPA	chr19	41265371	+	EIF3I	chr1	32688010	+
3UTR-intron	ENST00000599570	ENST00000471486		ChiTaRS3.1			AU123912	SNRPA	chr19	41265371	+	EIF3I	chr1	32688010	+
intron-intron	ENST00000529631	ENST00000404479		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529631	ENST00000318709		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529631	ENST00000459629		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529631	ENST00000409301		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529191	ENST00000404479		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529191	ENST00000318709		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529191	ENST00000459629		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000529191	ENST00000409301		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000273550	ENST00000404479		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000273550	ENST00000318709		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000273550	ENST00000459629		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000273550	ENST00000409301		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000526640	ENST00000404479		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000526640	ENST00000318709		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000526640	ENST00000459629		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000526640	ENST00000409301		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000532601	ENST00000404479		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000532601	ENST00000318709		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000532601	ENST00000459629		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-intron	ENST00000532601	ENST00000409301		ChiTaRS3.1			BG527923	FTH1	chr11	61734981	-	AVL9	chr7	33102232	-
intron-5UTR	ENST00000313070	ENST00000497931		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000313070	ENST00000361910		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000313070	ENST00000538627		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000313070	ENST00000539247		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000334010	ENST00000497931		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000334010	ENST00000361910		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000334010	ENST00000538627		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000334010	ENST00000539247		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000412584	ENST00000497931		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000412584	ENST00000361910		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000412584	ENST00000538627		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000412584	ENST00000539247		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000449022	ENST00000497931		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000449022	ENST00000361910		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000449022	ENST00000538627		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000449022	ENST00000539247		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000476131	ENST00000497931		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000476131	ENST00000361910		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000476131	ENST00000538627		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
intron-5UTR	ENST00000476131	ENST00000539247		ChiTaRS3.1			AK098170	CADPS2	chr7	122153327	-	ARMCX6	chrX	100870748	-
In-frame	ENST00000261558	ENST00000375571		ChiTaRS3.1			DA250860	AP5M1	chr14	57741156	+	MAPRE1	chr20	31436476	+
In-frame	ENST00000431972	ENST00000375571		ChiTaRS3.1			DA250860	AP5M1	chr14	57741156	+	MAPRE1	chr20	31436476	+
intron-3CDS	ENST00000556723	ENST00000375571		ChiTaRS3.1			DA250860	AP5M1	chr14	57741156	+	MAPRE1	chr20	31436476	+
3UTR-5UTR	ENST00000355280	ENST00000604900		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000412716		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000449723		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000549555		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000439799		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000425012		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000549732		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000355280	ENST00000551534		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000355280	ENST00000551313		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000604900		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000412716		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000449723		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000549555		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000439799		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000425012		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000549732		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000347992	ENST00000551534		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000347992	ENST00000551313		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000604900		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000412716		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000449723		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000549555		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000439799		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000425012		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000549732		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-intron	ENST00000453408	ENST00000551534		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-intron	ENST00000453408	ENST00000551313		ChiTaRS3.1			AA325636	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-intron	ENST00000245907	ENST00000280333		ChiTaRS3.1			AV684613	C3	chr19	6677846	-	DOCK1	chr10	128775021	-
intron-intron	ENST00000245907	ENST00000484400		ChiTaRS3.1			AV684613	C3	chr19	6677846	-	DOCK1	chr10	128775021	-
intron-intron	ENST00000599668	ENST00000280333		ChiTaRS3.1			AV684613	C3	chr19	6677846	-	DOCK1	chr10	128775021	-
intron-intron	ENST00000599668	ENST00000484400		ChiTaRS3.1			AV684613	C3	chr19	6677846	-	DOCK1	chr10	128775021	-
intron-3UTR	ENST00000297785	ENST00000262809		ChiTaRS3.1			AI493829	ALDH1A1	chr9	75652625	+	ELL	chr19	18555203	+
intron-intron	ENST00000297785	ENST00000596124		ChiTaRS3.1			AI493829	ALDH1A1	chr9	75652625	+	ELL	chr19	18555203	+
intron-3UTR	ENST00000376939	ENST00000262809		ChiTaRS3.1			AI493829	ALDH1A1	chr9	75652625	+	ELL	chr19	18555203	+
intron-intron	ENST00000376939	ENST00000596124		ChiTaRS3.1			AI493829	ALDH1A1	chr9	75652625	+	ELL	chr19	18555203	+
intron-3UTR	ENST00000482210	ENST00000262809		ChiTaRS3.1			AI493829	ALDH1A1	chr9	75652625	+	ELL	chr19	18555203	+
intron-intron	ENST00000482210	ENST00000596124		ChiTaRS3.1			AI493829	ALDH1A1	chr9	75652625	+	ELL	chr19	18555203	+
intron-3CDS	ENST00000443891	ENST00000601521		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000443891	ENST00000598098		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000443891	ENST00000598495		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000443891	ENST00000196551		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000443891	ENST00000596046		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
5UTR-3CDS	ENST00000273062	ENST00000601521		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
5UTR-intron	ENST00000273062	ENST00000598098		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
5UTR-intron	ENST00000273062	ENST00000598495		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
5UTR-intron	ENST00000273062	ENST00000196551		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
5UTR-intron	ENST00000273062	ENST00000596046		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-3CDS	ENST00000488627	ENST00000601521		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000488627	ENST00000598098		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000488627	ENST00000598495		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000488627	ENST00000196551		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000488627	ENST00000596046		ChiTaRS3.1			BQ432456	CTDSP1	chr2	219264765	+	RPS5	chr19	58904350	+
intron-intron	ENST00000367612	ENST00000391826		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000367612	ENST00000595948		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000367612	ENST00000341114		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000609928	ENST00000391826		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000609928	ENST00000595948		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000609928	ENST00000341114		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000482587	ENST00000391826		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000482587	ENST00000595948		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
intron-intron	ENST00000482587	ENST00000341114		ChiTaRS3.1			AA573236	TOR1AIP2	chr1	179831795	+	IL4I1	chr19	50412982	+
5CDS-intron	ENST00000238146	ENST00000395555		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
5CDS-intron	ENST00000238146	ENST00000494157		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
5CDS-intron	ENST00000238146	ENST00000225740		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
5CDS-intron	ENST00000238146	ENST00000444455		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
5CDS-intron	ENST00000238146	ENST00000457500		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
5CDS-intron	ENST00000238146	ENST00000485231		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000538744	ENST00000395555		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000538744	ENST00000494157		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000538744	ENST00000225740		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000538744	ENST00000444455		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000538744	ENST00000457500		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000538744	ENST00000485231		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
3UTR-intron	ENST00000541259	ENST00000395555		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
3UTR-intron	ENST00000541259	ENST00000494157		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
3UTR-intron	ENST00000541259	ENST00000225740		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
3UTR-intron	ENST00000541259	ENST00000444455		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
3UTR-intron	ENST00000541259	ENST00000457500		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
3UTR-intron	ENST00000541259	ENST00000485231		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000421670	ENST00000395555		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000421670	ENST00000494157		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000421670	ENST00000225740		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000421670	ENST00000444455		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000421670	ENST00000457500		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000421670	ENST00000485231		ChiTaRS3.1			BQ331769	DDX55	chr12	124101096	+	ALDH3A1	chr17	19643782	-
intron-intron	ENST00000367321	ENST00000362477		ChiTaRS3.1			AI311578	MTHFD1L	chr6	151220027	-	RNU5E-1	chr5	80550879	-
5CDS-intron	ENST00000367307	ENST00000362477		ChiTaRS3.1			AI311578	MTHFD1L	chr6	151220027	-	RNU5E-1	chr5	80550879	-
intron-intron	ENST00000478643	ENST00000362477		ChiTaRS3.1			AI311578	MTHFD1L	chr6	151220027	-	RNU5E-1	chr5	80550879	-
Frame-shit	ENST00000258886	ENST00000445937		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000258886	ENST00000531443		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000258886	ENST00000517566		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000258886	ENST00000452423		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000258886	ENST00000442977		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000521963		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000312046		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000449762		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000297447		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000521592		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000258886	ENST00000497705		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000560440	ENST00000445937		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000560440	ENST00000531443		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
Frame-shit	ENST00000560440	ENST00000517566		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000560440	ENST00000452423		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-5UTR	ENST00000560440	ENST00000442977		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000521963		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000312046		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000449762		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000297447		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000521592		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
5CDS-intron	ENST00000560440	ENST00000497705		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000559427	ENST00000445937		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000559427	ENST00000531443		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000559427	ENST00000517566		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-5UTR	ENST00000559427	ENST00000452423		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-5UTR	ENST00000559427	ENST00000442977		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000521963		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000312046		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000449762		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000297447		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000521592		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-intron	ENST00000559427	ENST00000497705		ChiTaRS3.1			AK127563	IREB2	chr15	78732223	+	OXR1	chr8	107718609	+
intron-3CDS	ENST00000364938	ENST00000374746		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000374748		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000374749		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000374751		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000602371		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000374742		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000537177		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-5UTR	ENST00000364938	ENST00000478044		ChiTaRS3.1			BG256861	SNHG3	chr1	28834672	+	CUL2	chr10	35360268	-
intron-3UTR	ENST00000252242	ENST00000320580		ChiTaRS3.1			BP327844	KRT5	chr12	52913834	-	PACS1	chr11	66011346	+
intron-intron	ENST00000252242	ENST00000529757		ChiTaRS3.1			BP327844	KRT5	chr12	52913834	-	PACS1	chr11	66011346	+
intron-intron	ENST00000252242	ENST00000524815		ChiTaRS3.1			BP327844	KRT5	chr12	52913834	-	PACS1	chr11	66011346	+
intron-3CDS	ENST00000390548	ENST00000340513		ChiTaRS3.1			AW613377	IGHG1	chr22	23243547	-	TPX2	chr20	30380579	-
intron-3CDS	ENST00000390548	ENST00000300403		ChiTaRS3.1			AW613377	IGHG1	chr22	23243547	-	TPX2	chr20	30380579	-
3UTR-intron	ENST00000322764	ENST00000464615		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000322764	ENST00000265758		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000322764	ENST00000423166		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000322764	ENST00000423497		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000449423	ENST00000464615		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000449423	ENST00000265758		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000449423	ENST00000423166		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000449423	ENST00000423497		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000392910	ENST00000464615		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000392910	ENST00000265758		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000392910	ENST00000423166		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
3UTR-intron	ENST00000392910	ENST00000423497		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
intron-intron	ENST00000477373	ENST00000464615		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
intron-intron	ENST00000477373	ENST00000265758		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
intron-intron	ENST00000477373	ENST00000423166		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
intron-intron	ENST00000477373	ENST00000423497		ChiTaRS3.1			CK299603	ZYX	chr7	143087917	-	WBSCR22	chr7	73101361	-
In-frame	ENST00000537344	ENST00000582328		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000537344	ENST00000421678		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000537344	ENST00000262290		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000537344	ENST00000543544		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000582328		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000421678		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000262290		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000256194	ENST00000543544		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000582328		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000421678		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000262290		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000527546	ENST00000543544		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000582328		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000421678		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000262290		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000342902	ENST00000543544		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000582328		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000421678		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000262290		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
In-frame	ENST00000379612	ENST00000543544		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000582328		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000421678		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000262290		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000527195	ENST00000543544		ChiTaRS3.1			BC038409	MICAL2	chr11	12183966	+	LPO	chr17	56329541	+
intron-3CDS	ENST00000280187	ENST00000358602		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000280187	ENST00000509867		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000280187	ENST00000330838		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000280187	ENST00000514252		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000393658	ENST00000358602		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000393658	ENST00000509867		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000393658	ENST00000330838		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000393658	ENST00000514252		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506894	ENST00000358602		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506894	ENST00000509867		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000506894	ENST00000330838		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000506894	ENST00000514252		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000515090	ENST00000358602		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000515090	ENST00000509867		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000515090	ENST00000330838		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000515090	ENST00000514252		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506219	ENST00000358602		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506219	ENST00000509867		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000506219	ENST00000330838		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000506219	ENST00000514252		ChiTaRS3.1			AA350181	GPM6A	chr4	176561295	-	ANKRD17	chr4	74005342	-
intron-3UTR	ENST00000378535	ENST00000234111		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000378535	ENST00000405333		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000378535	ENST00000446285		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-3UTR	ENST00000228280	ENST00000234111		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000228280	ENST00000405333		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000228280	ENST00000446285		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-3UTR	ENST00000347404	ENST00000234111		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000347404	ENST00000405333		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000347404	ENST00000446285		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-3UTR	ENST00000357116	ENST00000234111		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000357116	ENST00000405333		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-intron	ENST00000357116	ENST00000446285		ChiTaRS3.1			BG282567	KITLG	chr12	88887428	-	ODC1	chr2	10580565	-
intron-3UTR	ENST00000372458	ENST00000338586		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000338515		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000367171		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000367169		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000539706		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000339876		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000367170		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000360049		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000367172		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-intron	ENST00000372458	ENST00000403080		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000404076		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000401399		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000404907		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-intron	ENST00000372458	ENST00000513543		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000372458	ENST00000495396		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000338586		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000338515		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000367171		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000367169		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000539706		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000339876		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000367170		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000360049		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000367172		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-intron	ENST00000413844	ENST00000403080		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000404076		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000401399		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000404907		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-intron	ENST00000413844	ENST00000513543		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000413844	ENST00000495396		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000338586		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000338515		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000367171		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000367169		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000539706		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000339876		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000367170		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000360049		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000367172		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-intron	ENST00000470769	ENST00000403080		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000404076		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000401399		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000404907		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-intron	ENST00000470769	ENST00000513543		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
intron-3UTR	ENST00000470769	ENST00000495396		ChiTaRS3.1			BP218140	ELOVL1	chr1	43830884	-	NFASC	chr1	204986628	+
5CDS-intron	ENST00000394332	ENST00000341776		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394332	ENST00000397311		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394332	ENST00000541660		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394332	ENST00000474854		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394333	ENST00000341776		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394333	ENST00000397311		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394333	ENST00000541660		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000394333	ENST00000474854		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000479035	ENST00000341776		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000479035	ENST00000397311		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000479035	ENST00000541660		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000479035	ENST00000474854		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000245857	ENST00000341776		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000245857	ENST00000397311		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000245857	ENST00000541660		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000245857	ENST00000474854		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000577407	ENST00000341776		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000577407	ENST00000397311		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000577407	ENST00000541660		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-intron	ENST00000577407	ENST00000474854		ChiTaRS3.1			BG878350	RPL23	chr17	37008857	-	JARID2	chr6	15498517	-
5CDS-3UTR	ENST00000377532	ENST00000395648		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000377532	ENST00000308212		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000377532	ENST00000533940		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000377532	ENST00000525680		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-intron	ENST00000377532	ENST00000531130		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-intron	ENST00000377532	ENST00000531928		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000361923	ENST00000395648		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000361923	ENST00000308212		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000361923	ENST00000533940		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-3UTR	ENST00000361923	ENST00000525680		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-intron	ENST00000361923	ENST00000531130		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
5CDS-intron	ENST00000361923	ENST00000531928		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-3UTR	ENST00000377541	ENST00000395648		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-3UTR	ENST00000377541	ENST00000308212		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-3UTR	ENST00000377541	ENST00000533940		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-3UTR	ENST00000377541	ENST00000525680		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-intron	ENST00000377541	ENST00000531130		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-intron	ENST00000377541	ENST00000531928		ChiTaRS3.1			BM546204	PER3	chr1	7887697	+	TP53I11	chr11	44956035	-
intron-3UTR	ENST00000369887	ENST00000379589		ChiTaRS3.1			AV706830	CYP17A1	chr10	104592810	-	LHFP	chr13	39917809	-
intron-intron	ENST00000369887	ENST00000495922		ChiTaRS3.1			AV706830	CYP17A1	chr10	104592810	-	LHFP	chr13	39917809	-
intron-3UTR	ENST00000489268	ENST00000379589		ChiTaRS3.1			AV706830	CYP17A1	chr10	104592810	-	LHFP	chr13	39917809	-
intron-intron	ENST00000489268	ENST00000495922		ChiTaRS3.1			AV706830	CYP17A1	chr10	104592810	-	LHFP	chr13	39917809	-
5CDS-3UTR	ENST00000389757	ENST00000357710		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389757	ENST00000324501		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389757	ENST00000344094		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389757	ENST00000261970		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389757	ENST00000394164		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-intron	ENST00000389757	ENST00000557511		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389757	ENST00000406768		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-intron	ENST00000389757	ENST00000394157		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-intron	ENST00000389757	ENST00000553447		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389759	ENST00000357710		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389759	ENST00000324501		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389759	ENST00000344094		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389759	ENST00000261970		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389759	ENST00000394164		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-intron	ENST00000389759	ENST00000557511		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-3UTR	ENST00000389759	ENST00000406768		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-intron	ENST00000389759	ENST00000394157		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
5CDS-intron	ENST00000389759	ENST00000553447		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-3UTR	ENST00000495123	ENST00000357710		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-3UTR	ENST00000495123	ENST00000324501		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-3UTR	ENST00000495123	ENST00000344094		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-3UTR	ENST00000495123	ENST00000261970		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-3UTR	ENST00000495123	ENST00000394164		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-intron	ENST00000495123	ENST00000557511		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-3UTR	ENST00000495123	ENST00000406768		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-intron	ENST00000495123	ENST00000394157		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
intron-intron	ENST00000495123	ENST00000553447		ChiTaRS3.1			BE090298	PKP4	chr2	159535154	+	PSEN1	chr14	73686042	+
3UTR-intron	ENST00000379261	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000379261	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000379261	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000379261	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000379261	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000379261	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000379261	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000416382	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000450189	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000542579	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000399850	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000417956	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354440	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000427450	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
3UTR-intron	ENST00000315874	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000608830	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000609692	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000354897	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000540320		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000400445		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000310336		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000379939		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000537702		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000379922		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-intron	ENST00000537122	ENST00000461581		ChiTaRS3.1			U38810	CELF2	chr10	11376427	+	NBEA	chr13	36050788	-
intron-3CDS	ENST00000275036	ENST00000261234		ChiTaRS3.1			CK822740	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
intron-intron	ENST00000275036	ENST00000537982		ChiTaRS3.1			CK822740	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
intron-intron	ENST00000275036	ENST00000537373		ChiTaRS3.1			CK822740	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
Frame-shit	ENST00000344726	ENST00000261234		ChiTaRS3.1			CK822740	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
5CDS-intron	ENST00000344726	ENST00000537982		ChiTaRS3.1			CK822740	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
5CDS-intron	ENST00000344726	ENST00000537373		ChiTaRS3.1			CK822740	HMGN3	chr6	79911993	-	TMEM5	chr12	64202453	+
5CDS-intron	ENST00000540367	ENST00000553160		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000540367	ENST00000547072		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000540367	ENST00000257895		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000540367	ENST00000548082		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000376618	ENST00000553160		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000376618	ENST00000547072		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000376618	ENST00000257895		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000376618	ENST00000548082		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000265641	ENST00000553160		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000265641	ENST00000547072		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000265641	ENST00000257895		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000265641	ENST00000548082		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000539743	ENST00000553160		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000539743	ENST00000547072		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000539743	ENST00000257895		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5CDS-intron	ENST00000539743	ENST00000548082		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5UTR-intron	ENST00000537756	ENST00000553160		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5UTR-intron	ENST00000537756	ENST00000547072		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5UTR-intron	ENST00000537756	ENST00000257895		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
5UTR-intron	ENST00000537756	ENST00000548082		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
intron-intron	ENST00000538994	ENST00000553160		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
intron-intron	ENST00000538994	ENST00000547072		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
intron-intron	ENST00000538994	ENST00000257895		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
intron-intron	ENST00000538994	ENST00000548082		ChiTaRS3.1			AK309464	CPT1A	chr11	68540732	-	RDH5	chr12	56117668	+
3UTR-3UTR	ENST00000166139	ENST00000458748		ChiTaRS3.1			BG951490	FSTL3	chr19	682370	+	SCARNA2	chr1	109642874	+
intron-3UTR	ENST00000592947	ENST00000458748		ChiTaRS3.1			BG951490	FSTL3	chr19	682370	+	SCARNA2	chr1	109642874	+
3UTR-intron	ENST00000570308	ENST00000393446		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000265437		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000393451		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000393449		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000323984		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000432298		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000422922		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000487459		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000393443		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000393447		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000393444		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000570308	ENST00000465133		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000393446		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000265437		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000393451		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000393449		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000323984		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000432298		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000422922		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000487459		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000393443		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000393447		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000393444		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
3UTR-intron	ENST00000219070	ENST00000465133		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000393446		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000265437		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000393451		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000393449		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000323984		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000432298		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000422922		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000487459		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000393443		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000393447		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000393444		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000543485	ENST00000465133		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000393446		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000265437		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000393451		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000393449		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000323984		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000432298		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000422922		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000487459		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000393443		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000393447		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000393444		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-intron	ENST00000437642	ENST00000465133		ChiTaRS3.1			CA440623	MMP2	chr16	55539897	-	ST7	chr7	116598035	+
intron-3UTR	ENST00000334919	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000334919	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000334919	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000334919	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000591287	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000591287	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000591287	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000591287	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000420428	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000420428	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000420428	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000420428	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000412753	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000412753	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000412753	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000412753	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000601019	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000601019	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000601019	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000601019	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000361795	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000361795	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000361795	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000361795	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000603232	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000603232	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000603232	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000603232	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000591282	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000591282	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000591282	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000591282	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000588597	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000588597	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000588597	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000588597	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000590011	ENST00000299293		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-intron	ENST00000590011	ENST00000549921		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000590011	ENST00000550389		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3UTR	ENST00000590011	ENST00000397997		ChiTaRS3.1			BI042138	CELF4	chr18	34823412	-	FRS2	chr12	69972190	+
intron-3CDS	ENST00000295321	ENST00000334121		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3CDS	ENST00000295321	ENST00000380918		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3UTR	ENST00000295321	ENST00000284041		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3CDS	ENST00000455721	ENST00000334121		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3CDS	ENST00000455721	ENST00000380918		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3UTR	ENST00000455721	ENST00000284041		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3CDS	ENST00000486662	ENST00000334121		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3CDS	ENST00000486662	ENST00000380918		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
intron-3UTR	ENST00000486662	ENST00000284041		ChiTaRS3.1			BU600561	IWS1	chr2	128261046	-	SREK1	chr5	65466566	+
5CDS-intron	ENST00000264335	ENST00000451940		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000456104		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000433530		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000447424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000433920		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000446751		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000420424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000413722		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000417860		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000413961		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000458739		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000366446		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000451940		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000456104		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000433530		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000447424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000433920		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000446751		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000420424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000413722		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000417860		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000413961		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000458739		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000366446		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000451940		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000456104		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000433530		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000447424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000433920		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000446751		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000420424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000413722		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000417860		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000413961		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000458739		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000366446		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000451940		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000456104		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000433530		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000447424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000433920		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000446751		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000420424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000413722		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000417860		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000413961		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000458739		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000366446		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000451940		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000456104		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000433530		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000447424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000433920		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000446751		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000420424		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000413722		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000417860		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000413961		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000458739		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000366446		ChiTaRS3.1			JN999699	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
Frame-shit	ENST00000252699	ENST00000339788		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000252699	ENST00000320816		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000252699	ENST00000545653		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000252699	ENST00000509337		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
5CDS-intron	ENST00000252699	ENST00000512525		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000424234	ENST00000339788		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000424234	ENST00000320816		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000424234	ENST00000545653		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000424234	ENST00000509337		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-intron	ENST00000424234	ENST00000512525		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000390009	ENST00000339788		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000390009	ENST00000320816		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000390009	ENST00000545653		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
Frame-shit	ENST00000390009	ENST00000509337		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
5CDS-intron	ENST00000390009	ENST00000512525		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000497637	ENST00000339788		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000497637	ENST00000320816		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000497637	ENST00000545653		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-3CDS	ENST00000497637	ENST00000509337		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
intron-intron	ENST00000497637	ENST00000512525		ChiTaRS3.1			BQ679209	ACTN4	chr19	39212303	+	DAB2	chr5	39376808	-
5UTR-3CDS	ENST00000216277	ENST00000300527		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000216277	ENST00000310645		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000216277	ENST00000357838		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000216277	ENST00000409416		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000216277	ENST00000397763		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-intron	ENST00000216277	ENST00000460886		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557320	ENST00000300527		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557320	ENST00000310645		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557320	ENST00000357838		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557320	ENST00000409416		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557320	ENST00000397763		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-intron	ENST00000557320	ENST00000460886		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-3CDS	ENST00000554130	ENST00000300527		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-3CDS	ENST00000554130	ENST00000310645		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-3CDS	ENST00000554130	ENST00000357838		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-3CDS	ENST00000554130	ENST00000409416		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-3CDS	ENST00000554130	ENST00000397763		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-intron	ENST00000554130	ENST00000460886		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557471	ENST00000300527		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557471	ENST00000310645		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557471	ENST00000357838		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557471	ENST00000409416		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-3CDS	ENST00000557471	ENST00000397763		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
5UTR-intron	ENST00000557471	ENST00000460886		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
intron-3CDS	ENST00000392990	ENST00000300527		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
intron-3CDS	ENST00000392990	ENST00000310645		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
intron-3CDS	ENST00000392990	ENST00000357838		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
intron-3CDS	ENST00000392990	ENST00000409416		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
intron-3CDS	ENST00000392990	ENST00000397763		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
intron-intron	ENST00000392990	ENST00000460886		ChiTaRS3.1			CO406110	PAPOLA	chr14	96968884	+	COL6A2	chr21	47531894	+
3UTR-intron	ENST00000592383	ENST00000268483		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
3UTR-intron	ENST00000592383	ENST00000423037		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
3UTR-intron	ENST00000592383	ENST00000426362		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
5CDS-intron	ENST00000253801	ENST00000268483		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
5CDS-intron	ENST00000253801	ENST00000423037		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
5CDS-intron	ENST00000253801	ENST00000426362		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
3UTR-intron	ENST00000585489	ENST00000268483		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
3UTR-intron	ENST00000585489	ENST00000423037		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
3UTR-intron	ENST00000585489	ENST00000426362		ChiTaRS3.1			BC020700	G6PC	chr17	41063045	+	TXNL4B	chr16	72094645	+
intron-3UTR	ENST00000215793	ENST00000360472		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000215793	ENST00000368077		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000215793	ENST00000368076		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000215793	ENST00000488858		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000439242	ENST00000360472		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000439242	ENST00000368077		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000439242	ENST00000368076		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-3UTR	ENST00000439242	ENST00000488858		ChiTaRS3.1			BU620654	SF3A1	chr22	30730670	+	PEA15	chr1	160183461	-
intron-intron	ENST00000472531	ENST00000187910		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000472531	ENST00000402603		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000472531	ENST00000292125		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000472531	ENST00000601833		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491356	ENST00000187910		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491356	ENST00000402603		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491356	ENST00000292125		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491356	ENST00000601833		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000340684	ENST00000187910		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000340684	ENST00000402603		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000340684	ENST00000292125		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000340684	ENST00000601833		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000543802	ENST00000187910		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000543802	ENST00000402603		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000543802	ENST00000292125		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000543802	ENST00000601833		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491848	ENST00000187910		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491848	ENST00000402603		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491848	ENST00000292125		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-intron	ENST00000491848	ENST00000601833		ChiTaRS3.1			AA367923	ZNF124	chr1	247292427	-	PSG6	chr19	43702276	-
intron-3UTR	ENST00000445552	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000445552	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000445552	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000445552	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000337845	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000337845	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000337845	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000337845	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000329240	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000329240	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000329240	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000329240	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000573185	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000573185	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000573185	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000573185	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000570550	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000570550	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000570550	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000570550	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000336125	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000336125	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000336125	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000336125	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000549904	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000549904	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000549904	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000549904	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000550273	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000550273	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000550273	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000550273	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000549665	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000549665	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000549665	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000549665	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000553155	ENST00000405379		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000553155	ENST00000324883		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-3UTR	ENST00000553155	ENST00000324907		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
intron-intron	ENST00000553155	ENST00000480736		ChiTaRS3.1			BE144212	ARL17A	chr17	197735	-	GRHL1	chr2	10141544	+
3UTR-3UTR	ENST00000295897	ENST00000262096		ChiTaRS3.1			AI133546	ALB	chr4	74286029	+	ZDHHC2	chr8	17078894	+
3UTR-3UTR	ENST00000415165	ENST00000262096		ChiTaRS3.1			AI133546	ALB	chr4	74286029	+	ZDHHC2	chr8	17078894	+
3UTR-3UTR	ENST00000503124	ENST00000262096		ChiTaRS3.1			AI133546	ALB	chr4	74286029	+	ZDHHC2	chr8	17078894	+
intron-3UTR	ENST00000509063	ENST00000262096		ChiTaRS3.1			AI133546	ALB	chr4	74286029	+	ZDHHC2	chr8	17078894	+
3UTR-3UTR	ENST00000401494	ENST00000262096		ChiTaRS3.1			AI133546	ALB	chr4	74286029	+	ZDHHC2	chr8	17078894	+
3UTR-3UTR	ENST00000505649	ENST00000262096		ChiTaRS3.1			AI133546	ALB	chr4	74286029	+	ZDHHC2	chr8	17078894	+
intron-3CDS	ENST00000483233	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000483233	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000483233	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000483233	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000315877	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000315877	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000315877	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000315877	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000487005	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000487005	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000487005	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000487005	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000395008	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000395008	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000395008	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000395008	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000361143	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000361143	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000361143	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000361143	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000461108	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000461108	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000461108	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000461108	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000525795	ENST00000537454		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000525795	ENST00000221891		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-3CDS	ENST00000525795	ENST00000586861		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000525795	ENST00000589298		ChiTaRS3.1			BI037742	ABHD14B	chr3	52014918	+	APLP1	chr19	36362518	+
intron-intron	ENST00000295522	ENST00000245907		ChiTaRS3.1			AI133078	CLDN1	chr3	190024282	+	C3	chr19	6717508	-
intron-intron	ENST00000295522	ENST00000599668		ChiTaRS3.1			AI133078	CLDN1	chr3	190024282	+	C3	chr19	6717508	-
intron-3CDS	ENST00000509479	ENST00000328345		ChiTaRS3.1			BF127989	MAML3	chr4	140811058	-	POU3F2	chr6	99283155	+
intron-3CDS	ENST00000327122	ENST00000328345		ChiTaRS3.1			BF127989	MAML3	chr4	140811058	-	POU3F2	chr6	99283155	+
intron-3CDS	ENST00000398940	ENST00000328345		ChiTaRS3.1			BF127989	MAML3	chr4	140811058	-	POU3F2	chr6	99283155	+
intron-intron	ENST00000493429	ENST00000321505		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000493429	ENST00000389726		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000493429	ENST00000265654		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000467291	ENST00000321505		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000467291	ENST00000389726		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000467291	ENST00000265654		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000360937	ENST00000321505		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000360937	ENST00000389726		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000360937	ENST00000265654		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000416793	ENST00000321505		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000416793	ENST00000389726		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000416793	ENST00000265654		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000480582	ENST00000321505		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000480582	ENST00000389726		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-intron	ENST00000480582	ENST00000265654		ChiTaRS3.1			AI815581	AOC1	chr7	150556246	-	KIAA1549L	chr11	33571809	-
intron-3UTR	ENST00000253023	ENST00000294964		ChiTaRS3.1			BQ011009	UBE2M	chr19	59067133	+	PKDCC	chr2	42285600	-
intron-intron	ENST00000253023	ENST00000480099		ChiTaRS3.1			BQ011009	UBE2M	chr19	59067133	+	PKDCC	chr2	42285600	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			HW088350	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			HW088350	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			HW088350	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			HW088350	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
3UTR-intron	ENST00000265881	ENST00000379061		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000265881	ENST00000457710		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000379061		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000457710		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000379061		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000457710		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000379061		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000457710		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000379061		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000457710		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000379061		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000457710		ChiTaRS3.1			AA508759	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
Frame-shit	ENST00000546111	ENST00000562057		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000546111	ENST00000344051		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000546111	ENST00000431806		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000535923	ENST00000562057		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000535923	ENST00000344051		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000535923	ENST00000431806		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000542912	ENST00000562057		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000542912	ENST00000344051		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000542912	ENST00000431806		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000440277	ENST00000562057		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000440277	ENST00000344051		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000440277	ENST00000431806		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000399433	ENST00000562057		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000399433	ENST00000344051		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
Frame-shit	ENST00000399433	ENST00000431806		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
5UTR-3CDS	ENST00000544134	ENST00000562057		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
5UTR-3CDS	ENST00000544134	ENST00000344051		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
5UTR-3CDS	ENST00000544134	ENST00000431806		ChiTaRS3.1			BE281028	PHB2	chr12	7079358	-	SPINT1	chr15	41148087	+
intron-5UTR	ENST00000333039	ENST00000336023		ChiTaRS3.1			CD621809	NPTXR	chr22	39215153	-	TUBA1B	chr12	49525129	-
5CDS-intron	ENST00000283365	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000283365	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000283365	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000283365	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000283365	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000283365	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000283365	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000596745	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000315456	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598334	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000554864	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399121	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000595022	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269190	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5UTR-intron	ENST00000399097	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598774	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000598142	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000348997	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000597599	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000269191	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000444659	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
5CDS-intron	ENST00000399113	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000601125	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000269192	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000591182	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000597674	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000556414	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000599844	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000590831	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000590898		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000399022		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000337059		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000357384		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000588737		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000319040		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000592449	ENST00000588459		ChiTaRS3.1			DA409961	DTNA	chr18	32374215	+	RPRD1A	chr18	33573277	-
intron-intron	ENST00000337198	ENST00000541908		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000337198	ENST00000398864		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000337198	ENST00000266508		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000337198	ENST00000360995		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000347770	ENST00000541908		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000347770	ENST00000398864		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000347770	ENST00000266508		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000347770	ENST00000360995		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000522311	ENST00000541908		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000522311	ENST00000398864		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000522311	ENST00000266508		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
intron-intron	ENST00000522311	ENST00000360995		ChiTaRS3.1			AA765801	AZIN1	chr8	103876233	-	AEBP2	chr12	19592799	+
3UTR-3CDS	ENST00000538546	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000538546	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000538546	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000535623	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535623	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535623	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000535011	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535011	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535011	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000542996	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000542996	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000542996	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000249364	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000249364	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000249364	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000449187	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000449187	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000449187	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-3CDS	ENST00000479257	ENST00000332427		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-intron	ENST00000479257	ENST00000537507		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-intron	ENST00000479257	ENST00000540510		ChiTaRS3.1			BF057219	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
5CDS-intron	ENST00000400098	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400098	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400098	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400098	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000400100	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400100	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400100	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400100	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000400097	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400097	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400097	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000400097	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
intron-intron	ENST00000553597	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
intron-5UTR	ENST00000553597	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
intron-5UTR	ENST00000553597	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
intron-5UTR	ENST00000553597	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000390687	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000390687	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000390687	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000390687	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000346403	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000346403	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000346403	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000346403	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000554227	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000554227	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000554227	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000554227	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000577565	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000577565	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000577565	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000577565	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-intron	ENST00000444203	ENST00000379933		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000444203	ENST00000379938		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000444203	ENST00000334984		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000444203	ENST00000349384		ChiTaRS3.1			T19462	SNRPN	chr15	25223436	+	RREB1	chr6	7108259	+
5CDS-5UTR	ENST00000307422	ENST00000301729		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
5CDS-5UTR	ENST00000307422	ENST00000562238		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
5CDS-intron	ENST00000307422	ENST00000570258		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
5CDS-5UTR	ENST00000253099	ENST00000301729		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
5CDS-5UTR	ENST00000253099	ENST00000562238		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
5CDS-intron	ENST00000253099	ENST00000570258		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
intron-5UTR	ENST00000590669	ENST00000301729		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
intron-5UTR	ENST00000590669	ENST00000562238		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
intron-intron	ENST00000590669	ENST00000570258		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
3UTR-5UTR	ENST00000393733	ENST00000301729		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
3UTR-5UTR	ENST00000393733	ENST00000562238		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
3UTR-intron	ENST00000393733	ENST00000570258		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
intron-5UTR	ENST00000588502	ENST00000301729		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
intron-5UTR	ENST00000588502	ENST00000562238		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
intron-intron	ENST00000588502	ENST00000570258		ChiTaRS3.1			BE388423	MRPL4	chr19	10370405	+	ECI1	chr16	2301572	-
3UTR-3CDS	ENST00000411630	ENST00000215790		ChiTaRS3.1			BI089294	DANCR	chr4	53579127	+	TBC1D10A	chr22	30700622	-
3UTR-3CDS	ENST00000411630	ENST00000403477		ChiTaRS3.1			BI089294	DANCR	chr4	53579127	+	TBC1D10A	chr22	30700622	-
3UTR-5UTR	ENST00000411630	ENST00000403362		ChiTaRS3.1			BI089294	DANCR	chr4	53579127	+	TBC1D10A	chr22	30700622	-
3UTR-5UTR	ENST00000411630	ENST00000490449		ChiTaRS3.1			BI089294	DANCR	chr4	53579127	+	TBC1D10A	chr22	30700622	-
intron-3CDS	ENST00000576906	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
intron-3CDS	ENST00000576906	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000407558	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000407558	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000608722	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000608722	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000424546	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000424546	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000573580	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000573580	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000421765	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000421765	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000610180	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000610180	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000608993	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000608993	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000360862	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000360862	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000414063	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000414063	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
intron-3CDS	ENST00000570551	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
intron-3CDS	ENST00000570551	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000572942	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000572942	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000576916	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000576916	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000575076	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000575076	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000577013	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000577013	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000570819	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000570819	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000572584	ENST00000396062		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
In-frame	ENST00000572584	ENST00000216330		ChiTaRS3.1			BQ213165	NAA60	chr16	3529591	+	FKBP3	chr14	45590818	-
5CDS-5UTR	ENST00000368972	ENST00000332582		ChiTaRS3.1			DN991840	ARMC2	chr6	109197555	+	GPR173	chrX	53105706	+
5CDS-5UTR	ENST00000392644	ENST00000332582		ChiTaRS3.1			DN991840	ARMC2	chr6	109197555	+	GPR173	chrX	53105706	+
intron-5UTR	ENST00000481850	ENST00000332582		ChiTaRS3.1			DN991840	ARMC2	chr6	109197555	+	GPR173	chrX	53105706	+
intron-3UTR	ENST00000394332	ENST00000377038		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000394332	ENST00000377036		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000394333	ENST00000377038		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000394333	ENST00000377036		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000479035	ENST00000377038		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000479035	ENST00000377036		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000245857	ENST00000377038		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000245857	ENST00000377036		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000577407	ENST00000377038		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000577407	ENST00000377036		ChiTaRS3.1			AW594130	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
5CDS-intron	ENST00000417037	ENST00000233331		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000417037	ENST00000409917		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000417037	ENST00000469849		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000396334	ENST00000233331		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000396334	ENST00000409917		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000396334	ENST00000469849		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000424893	ENST00000233331		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000424893	ENST00000409917		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000424893	ENST00000469849		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000495303	ENST00000233331		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000495303	ENST00000409917		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000495303	ENST00000469849		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000443433	ENST00000233331		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000443433	ENST00000409917		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000443433	ENST00000469849		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000481122	ENST00000233331		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000481122	ENST00000409917		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
3UTR-intron	ENST00000481122	ENST00000469849		ChiTaRS3.1			BE144273	MYD88	chr3	38182652	+	INO80B	chr2	74687551	+
5CDS-intron	ENST00000430297	ENST00000523629		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000396218		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000265814		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000360348		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000436581		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000520724		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000518844		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000522163		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000422361		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
5CDS-intron	ENST00000430297	ENST00000521553		ChiTaRS3.1			DA110499	FAM134A	chr2	220046947	+	RUNX1T1	chr8	93035559	-
Frame-shit	ENST00000450554	ENST00000282388		ChiTaRS3.1			AI650588	U2AF2	chr19	56170650	+	ZFP36L2	chr2	43451623	-
Frame-shit	ENST00000308924	ENST00000282388		ChiTaRS3.1			AI650588	U2AF2	chr19	56170650	+	ZFP36L2	chr2	43451623	-
intron-3CDS	ENST00000590551	ENST00000282388		ChiTaRS3.1			AI650588	U2AF2	chr19	56170650	+	ZFP36L2	chr2	43451623	-
intron-intron	ENST00000360538	ENST00000384096		ChiTaRS3.1			BF094191	TOPORS	chr9	32543255	-	SNHG8	chr4	119199915	+
intron-intron	ENST00000379858	ENST00000384096		ChiTaRS3.1			BF094191	TOPORS	chr9	32543255	-	SNHG8	chr4	119199915	+
intron-3UTR	ENST00000544021	ENST00000252699		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000544021	ENST00000424234		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000544021	ENST00000390009		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000544021	ENST00000497637		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-3UTR	ENST00000266556	ENST00000252699		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000266556	ENST00000424234		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000266556	ENST00000390009		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000266556	ENST00000497637		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-3UTR	ENST00000545700	ENST00000252699		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000545700	ENST00000424234		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000545700	ENST00000390009		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
intron-intron	ENST00000545700	ENST00000497637		ChiTaRS3.1			BG685833	TAPBPL	chr12	6571675	-	ACTN4	chr19	39220670	+
Frame-shit	ENST00000427662	ENST00000368984		ChiTaRS3.1			AV734257	SH3PXD2A	chr10	105452785	-	HTRA1	chr10	124248414	+
In-frame	ENST00000369774	ENST00000368984		ChiTaRS3.1			AV734257	SH3PXD2A	chr10	105452785	-	HTRA1	chr10	124248414	+
In-frame	ENST00000355946	ENST00000368984		ChiTaRS3.1			AV734257	SH3PXD2A	chr10	105452785	-	HTRA1	chr10	124248414	+
5UTR-3CDS	ENST00000315994	ENST00000368984		ChiTaRS3.1			AV734257	SH3PXD2A	chr10	105452785	-	HTRA1	chr10	124248414	+
intron-3CDS	ENST00000540321	ENST00000368984		ChiTaRS3.1			AV734257	SH3PXD2A	chr10	105452785	-	HTRA1	chr10	124248414	+
intron-3CDS	ENST00000538130	ENST00000368984		ChiTaRS3.1			AV734257	SH3PXD2A	chr10	105452785	-	HTRA1	chr10	124248414	+
intron-3UTR	ENST00000264951	ENST00000299314		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000264951	ENST00000549940		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000264951	ENST00000392919		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000264951	ENST00000549165		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000392981	ENST00000299314		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000392981	ENST00000549940		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000392981	ENST00000392919		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000392981	ENST00000549165		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000463916	ENST00000299314		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000463916	ENST00000549940		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000463916	ENST00000392919		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000463916	ENST00000549165		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000544157	ENST00000299314		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000544157	ENST00000549940		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000544157	ENST00000392919		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000544157	ENST00000549165		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000465074	ENST00000299314		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000465074	ENST00000549940		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000465074	ENST00000392919		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-intron	ENST00000465074	ENST00000549165		ChiTaRS3.1			BE671625	XRN1	chr3	142029034	-	GNPTAB	chr12	102139580	-
intron-3UTR	ENST00000552397	ENST00000282120		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552397	ENST00000377386		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552397	ENST00000398263		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552397	ENST00000409232		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552397	ENST00000409015		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-intron	ENST00000552397	ENST00000444342		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000305879	ENST00000282120		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000305879	ENST00000377386		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000305879	ENST00000398263		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000305879	ENST00000409232		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000305879	ENST00000409015		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-intron	ENST00000305879	ENST00000444342		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552395	ENST00000282120		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552395	ENST00000377386		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552395	ENST00000398263		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552395	ENST00000409232		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-3UTR	ENST00000552395	ENST00000409015		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
intron-intron	ENST00000552395	ENST00000444342		ChiTaRS3.1			BU620280	GTSF1	chr12	54856468	+	TGOLN2	chr2	85549255	+
5UTR-3CDS	ENST00000308580	ENST00000520602		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000370576		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000536274		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000370578		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000414978		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000519895		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000370573		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-3CDS	ENST00000308580	ENST00000338585		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
5UTR-intron	ENST00000308580	ENST00000483690		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000520602		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000370576		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000536274		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000370578		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000414978		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000519895		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000370573		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000544199	ENST00000338585		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-intron	ENST00000544199	ENST00000483690		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000520602		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000370576		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000536274		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000370578		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000414978		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000519895		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000370573		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3CDS	ENST00000561136	ENST00000338585		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-intron	ENST00000561136	ENST00000483690		ChiTaRS3.1			X13230	TMOD3	chr15	52122035	+	MCF2	chrX	138697214	-
intron-3UTR	ENST00000299980	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000299980	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000299980	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000299980	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000423132	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000423132	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000423132	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000423132	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000433195	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000433195	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000433195	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000433195	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000569748	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000569748	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000569748	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000569748	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000393512	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000393512	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000393512	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000393512	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000570297	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000570297	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000570297	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000570297	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000564155	ENST00000178638		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000564155	ENST00000344366		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000564155	ENST00000422263		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-intron	ENST00000564155	ENST00000560666		ChiTaRS3.1			AL050025	AP1G1	chr16	71776185	-	CA12	chr15	63616925	-
intron-3UTR	ENST00000494664	ENST00000262133		ChiTaRS3.1			CA429191	TIMMDC1	chr3	119242451	-	RBL2	chr16	53524214	-
intron-3UTR	ENST00000494664	ENST00000379935		ChiTaRS3.1			CA429191	TIMMDC1	chr3	119242451	-	RBL2	chr16	53524214	-
intron-3UTR	ENST00000494664	ENST00000544545		ChiTaRS3.1			CA429191	TIMMDC1	chr3	119242451	-	RBL2	chr16	53524214	-
intron-3UTR	ENST00000493694	ENST00000262133		ChiTaRS3.1			CA429191	TIMMDC1	chr3	119242451	-	RBL2	chr16	53524214	-
intron-3UTR	ENST00000493694	ENST00000379935		ChiTaRS3.1			CA429191	TIMMDC1	chr3	119242451	-	RBL2	chr16	53524214	-
intron-3UTR	ENST00000493694	ENST00000544545		ChiTaRS3.1			CA429191	TIMMDC1	chr3	119242451	-	RBL2	chr16	53524214	-
3UTR-intron	ENST00000257290	ENST00000311862		ChiTaRS3.1			AA047624	PDGFRA	chr4	55163461	+	PRG2	chr11	57174739	-
3UTR-intron	ENST00000257290	ENST00000533605		ChiTaRS3.1			AA047624	PDGFRA	chr4	55163461	+	PRG2	chr11	57174739	-
3UTR-intron	ENST00000257290	ENST00000525955		ChiTaRS3.1			AA047624	PDGFRA	chr4	55163461	+	PRG2	chr11	57174739	-
intron-intron	ENST00000508170	ENST00000311862		ChiTaRS3.1			AA047624	PDGFRA	chr4	55163461	+	PRG2	chr11	57174739	-
intron-intron	ENST00000508170	ENST00000533605		ChiTaRS3.1			AA047624	PDGFRA	chr4	55163461	+	PRG2	chr11	57174739	-
intron-intron	ENST00000508170	ENST00000525955		ChiTaRS3.1			AA047624	PDGFRA	chr4	55163461	+	PRG2	chr11	57174739	-
intron-intron	ENST00000368655	ENST00000312132		ChiTaRS3.1			BI009511	GATAD2B	chr1	153779881	-	DPY19L2P2	chr7	102902788	+
Frame-shit	ENST00000395146	ENST00000368679		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
Frame-shit	ENST00000395146	ENST00000368676		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
5CDS-intron	ENST00000395146	ENST00000467145		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-3CDS	ENST00000307808	ENST00000368679		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-3CDS	ENST00000307808	ENST00000368676		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-intron	ENST00000307808	ENST00000467145		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-3CDS	ENST00000544085	ENST00000368679		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-3CDS	ENST00000544085	ENST00000368676		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-intron	ENST00000544085	ENST00000467145		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
3UTR-3CDS	ENST00000511996	ENST00000368679		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
3UTR-3CDS	ENST00000511996	ENST00000368676		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
3UTR-intron	ENST00000511996	ENST00000467145		ChiTaRS3.1			DA857102	AFF1	chr4	87869724	+	ADAM12	chr10	127824231	-
intron-5UTR	ENST00000328908	ENST00000335783		ChiTaRS3.1			BU178114	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
5CDS-5UTR	ENST00000397588	ENST00000335783		ChiTaRS3.1			BU178114	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
3UTR-5UTR	ENST00000472453	ENST00000335783		ChiTaRS3.1			BU178114	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
intron-5UTR	ENST00000449732	ENST00000335783		ChiTaRS3.1			BU178114	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
intron-5UTR	ENST00000343762	ENST00000335783		ChiTaRS3.1			BU178114	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
5CDS-3UTR	ENST00000401722	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000228318	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000188376	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000551917	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000552981	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000551265	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000547534	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000549338	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
5CDS-3UTR	ENST00000548847	ENST00000399816		ChiTaRS3.1			BF577272	SLC25A3	chr12	98987812	+	UBE2QL1	chr5	6491878	+
intron-3CDS	ENST00000311713	ENST00000547776		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000311713	ENST00000329257		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000311713	ENST00000547010		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000341752		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000549558		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000550693		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000549025		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000549493		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000547446		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000333732		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000546568		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000332712		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000546960		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000311713	ENST00000550833		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000278856	ENST00000547776		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000278856	ENST00000329257		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000278856	ENST00000547010		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000341752		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000549558		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000550693		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000549025		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000549493		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000547446		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000333732		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000546568		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000332712		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000546960		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000278856	ENST00000550833		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000529106	ENST00000547776		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000529106	ENST00000329257		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000529106	ENST00000547010		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000341752		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000549558		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000550693		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000549025		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000549493		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000547446		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000333732		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000546568		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000332712		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000546960		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000529106	ENST00000550833		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000525239	ENST00000547776		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000525239	ENST00000329257		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000525239	ENST00000547010		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000341752		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000549558		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000550693		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000549025		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000549493		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000547446		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000333732		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000546568		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000332712		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000546960		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525239	ENST00000550833		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000525752	ENST00000547776		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000525752	ENST00000329257		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000525752	ENST00000547010		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000341752		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000549558		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000550693		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000549025		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000549493		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000547446		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000333732		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000546568		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000332712		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000546960		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000525752	ENST00000550833		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000540620	ENST00000547776		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000540620	ENST00000329257		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-3CDS	ENST00000540620	ENST00000547010		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000341752		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000549558		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000550693		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000549025		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000549493		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000547446		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000333732		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000546568		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000332712		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000546960		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000540620	ENST00000550833		ChiTaRS3.1			DB042957	WDR74	chr11	62609092	-	ANKS1B	chr12	99898368	-
intron-intron	ENST00000382582	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000377715		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000409009		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000264448		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000464408		ChiTaRS3.1			AV722334	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
In-frame	ENST00000354520	ENST00000395146		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
In-frame	ENST00000354520	ENST00000307808		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AF024541	KMT2A	chr11	118353210	+	AFF1	chr4	88005270	+
5UTR-3CDS	ENST00000453741	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000453741	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000453741	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000453741	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000453741	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000540744	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000540744	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000540744	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000540744	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000540744	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000543227	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000543227	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000543227	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000543227	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000543227	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000602162	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000602162	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000602162	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000602162	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000602162	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000319783	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000319783	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000319783	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-intron	ENST00000319783	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-intron	ENST00000319783	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000595798	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000595798	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000595798	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-intron	ENST00000595798	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-intron	ENST00000595798	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000600943	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000600943	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000600943	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000600943	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000600943	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000596702	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000596702	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-3CDS	ENST00000596702	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000596702	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5UTR-intron	ENST00000596702	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000602046	ENST00000258198		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000602046	ENST00000379482		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-3CDS	ENST00000602046	ENST00000443351		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-intron	ENST00000602046	ENST00000570201		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
intron-intron	ENST00000602046	ENST00000440564		ChiTaRS3.1			BU072510	ZNF611	chr19	53238250	-	DYNC1LI2	chr16	66783217	-
5CDS-intron	ENST00000358372	ENST00000509108		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000358372	ENST00000306193		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000358372	ENST00000504480		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000337387	ENST00000509108		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000337387	ENST00000306193		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000337387	ENST00000504480		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-intron	ENST00000494513	ENST00000509108		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-intron	ENST00000494513	ENST00000306193		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-intron	ENST00000494513	ENST00000504480		ChiTaRS3.1			BF930782	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-3UTR	ENST00000395324	ENST00000542575		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000395324	ENST00000434726		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000395324	ENST00000594991		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000395324	ENST00000412532		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000229022	ENST00000542575		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000229022	ENST00000434726		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000229022	ENST00000594991		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000229022	ENST00000412532		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000549336	ENST00000542575		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000549336	ENST00000434726		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000549336	ENST00000594991		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000549336	ENST00000412532		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000550325	ENST00000542575		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000550325	ENST00000434726		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000550325	ENST00000594991		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000550325	ENST00000412532		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000535672	ENST00000542575		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000535672	ENST00000434726		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000535672	ENST00000594991		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000535672	ENST00000412532		ChiTaRS3.1			BG272237	VDR	chr12	48235575	+	SLC1A5	chr19	47278590	+
intron-3UTR	ENST00000571688	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000571688	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000413364	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000413364	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000339430	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000339430	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000381810	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000381810	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000570904	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000570904	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000571459	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000571459	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000572255	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000572255	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000576036	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000576036	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000574763	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000574763	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000571976	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000571976	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000574703	ENST00000250092		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000574703	ENST00000380498		ChiTaRS3.1			CB529095	LITAF	chr16	11642584	+	CD68	chr17	7484960	-
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			DQ912589	BCR	chr22	23631809	+	ABL1	chr9	133747514	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			DQ912589	BCR	chr22	23631809	+	ABL1	chr9	133747514	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			DQ912589	BCR	chr22	23631809	+	ABL1	chr9	133747514	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			DQ912589	BCR	chr22	23631809	+	ABL1	chr9	133747514	+
intron-5UTR	ENST00000269397	ENST00000355857		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000269397	ENST00000535617		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000269397	ENST00000535757		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000269397	ENST00000409094		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000269397	ENST00000311521		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000269397	ENST00000460901		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000269397	ENST00000542275		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000269397	ENST00000393103		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000448310	ENST00000355857		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000448310	ENST00000535617		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000448310	ENST00000535757		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-5UTR	ENST00000448310	ENST00000409094		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000448310	ENST00000311521		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000448310	ENST00000460901		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000448310	ENST00000542275		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
intron-intron	ENST00000448310	ENST00000393103		ChiTaRS3.1			AV752007	CBX4	chr17	77812419	-	DBI	chr2	120124581	+
In-frame	ENST00000382582	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000382582	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000382582	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
Frame-shit	ENST00000355994	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
Frame-shit	ENST00000355994	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000355994	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397875	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397875	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000397875	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397866	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397866	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000397866	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397865	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397865	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000397865	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000527041	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000527041	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000527041	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000359645	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000359645	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000359645	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000528160	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000528160	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-5UTR	ENST00000528160	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397869	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000397869	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000397869	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000354542	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000354542	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000354542	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000526111	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000526111	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000526111	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000580402	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000580402	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000580402	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
Frame-shit	ENST00000579129	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
Frame-shit	ENST00000579129	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000579129	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000578193	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
In-frame	ENST00000578193	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
5CDS-5UTR	ENST00000578193	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000397863	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000397863	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-5UTR	ENST00000397863	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000397860	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000397860	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-5UTR	ENST00000397860	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000487778	ENST00000404141		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000487778	ENST00000397192		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-5UTR	ENST00000487778	ENST00000473219		ChiTaRS3.1			DA327424	MBP	chr18	74728786	-	PAXIP1	chr7	154790496	-
intron-3CDS	ENST00000567435	ENST00000324460		ChiTaRS3.1			AI042094	UBL7	chr15	74738557	+	HSPA5	chr9	128003385	+
intron-3CDS	ENST00000565335	ENST00000324460		ChiTaRS3.1			AI042094	UBL7	chr15	74738557	+	HSPA5	chr9	128003385	+
intron-3CDS	ENST00000395081	ENST00000324460		ChiTaRS3.1			AI042094	UBL7	chr15	74738557	+	HSPA5	chr9	128003385	+
intron-3CDS	ENST00000361351	ENST00000324460		ChiTaRS3.1			AI042094	UBL7	chr15	74738557	+	HSPA5	chr9	128003385	+
intron-3CDS	ENST00000564488	ENST00000324460		ChiTaRS3.1			AI042094	UBL7	chr15	74738557	+	HSPA5	chr9	128003385	+
3UTR-3UTR	ENST00000262370	ENST00000280527		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-intron	ENST00000262370	ENST00000473403		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-3UTR	ENST00000415496	ENST00000280527		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-intron	ENST00000415496	ENST00000473403		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-3UTR	ENST00000399577	ENST00000280527		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
3UTR-intron	ENST00000399577	ENST00000473403		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3UTR	ENST00000588994	ENST00000280527		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-intron	ENST00000588994	ENST00000473403		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3UTR	ENST00000586183	ENST00000280527		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-intron	ENST00000586183	ENST00000473403		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-3UTR	ENST00000588015	ENST00000280527		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
intron-intron	ENST00000588015	ENST00000473403		ChiTaRS3.1			AI767084	MGRN1	chr16	4740814	-	CRIM1	chr2	36776670	-
In-frame	ENST00000254066	ENST00000395135		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000395132		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268059		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000354026		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000268058		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000565898		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569477		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000569965		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000567543		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000435786		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000436891		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000564428		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000359928		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000254066	ENST00000563500		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000254066	ENST00000569161		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395135		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000395132		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268059		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000354026		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000268058		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000565898		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569477		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000569965		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000567543		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000435786		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000436891		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000564428		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000359928		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000394089	ENST00000563500		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000394089	ENST00000569161		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395135		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000395132		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268059		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000354026		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000268058		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000565898		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569477		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000569965		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000567543		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000435786		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000436891		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000564428		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000359928		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
In-frame	ENST00000425707	ENST00000563500		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
5CDS-3UTR	ENST00000425707	ENST00000569161		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395135		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000395132		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268059		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000354026		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000268058		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000565898		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569477		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000569965		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000567543		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000435786		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000436891		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000564428		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000359928		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394086	ENST00000563500		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394086	ENST00000569161		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395135		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000395132		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268059		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000354026		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000268058		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000565898		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569477		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000569965		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000567543		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000435786		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000436891		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000564428		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000359928		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000394081	ENST00000563500		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000394081	ENST00000569161		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395135		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000395132		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268059		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000354026		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000268058		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000565898		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569477		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000569965		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000567543		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000435786		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000436891		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000564428		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000359928		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3CDS	ENST00000420042	ENST00000563500		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
intron-3UTR	ENST00000420042	ENST00000569161		ChiTaRS3.1			M82827	RARA	chr17	38487648	+	PML	chr15	74317198	+
Frame-shit	ENST00000250151	ENST00000369026		ChiTaRS3.1			CA307816	CCL4	chr17	34432700	-	MCL1	chr1	150550874	+
5CDS-5UTR	ENST00000250151	ENST00000464132		ChiTaRS3.1			CA307816	CCL4	chr17	34432700	-	MCL1	chr1	150550874	+
5CDS-intron	ENST00000250151	ENST00000307940		ChiTaRS3.1			CA307816	CCL4	chr17	34432700	-	MCL1	chr1	150550874	+
Frame-shit	ENST00000394495	ENST00000369026		ChiTaRS3.1			CA307816	CCL4	chr17	34432700	-	MCL1	chr1	150550874	+
5CDS-5UTR	ENST00000394495	ENST00000464132		ChiTaRS3.1			CA307816	CCL4	chr17	34432700	-	MCL1	chr1	150550874	+
5CDS-intron	ENST00000394495	ENST00000307940		ChiTaRS3.1			CA307816	CCL4	chr17	34432700	-	MCL1	chr1	150550874	+
In-frame	ENST00000346916	ENST00000397661		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000346916	ENST00000592199		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000346916	ENST00000587760		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000346916	ENST00000585575		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000346916	ENST00000360105		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000346916	ENST00000588228		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000346916	ENST00000587260		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000346916	ENST00000358552		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-intron	ENST00000346916	ENST00000588680		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000545507	ENST00000397661		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000545507	ENST00000592199		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000545507	ENST00000587760		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000545507	ENST00000585575		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000545507	ENST00000360105		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000545507	ENST00000588228		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000545507	ENST00000587260		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000545507	ENST00000358552		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-intron	ENST00000545507	ENST00000588680		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000333511	ENST00000397661		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000333511	ENST00000592199		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000333511	ENST00000587760		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000333511	ENST00000585575		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000333511	ENST00000360105		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000333511	ENST00000588228		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000333511	ENST00000587260		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000333511	ENST00000358552		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-intron	ENST00000333511	ENST00000588680		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000353555	ENST00000397661		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000353555	ENST00000592199		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000353555	ENST00000587760		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000353555	ENST00000585575		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
In-frame	ENST00000353555	ENST00000360105		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000353555	ENST00000588228		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000353555	ENST00000587260		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-5UTR	ENST00000353555	ENST00000358552		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
5CDS-intron	ENST00000353555	ENST00000588680		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-3CDS	ENST00000574970	ENST00000397661		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-3CDS	ENST00000574970	ENST00000592199		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-3CDS	ENST00000574970	ENST00000587760		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-3CDS	ENST00000574970	ENST00000585575		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-3CDS	ENST00000574970	ENST00000360105		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-5UTR	ENST00000574970	ENST00000588228		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-5UTR	ENST00000574970	ENST00000587260		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-5UTR	ENST00000574970	ENST00000358552		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-intron	ENST00000574970	ENST00000588680		ChiTaRS3.1			XX000018	BSG	chr19	580787	+	NFIX	chr19	13135833	+
intron-3CDS	ENST00000215832	ENST00000296292		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000215832	ENST00000394738		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000398822	ENST00000296292		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000398822	ENST00000394738		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000544786	ENST00000296292		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000544786	ENST00000394738		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000491588	ENST00000296292		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3CDS	ENST00000491588	ENST00000394738		ChiTaRS3.1			AW752527	MAPK1	chr22	22116994	-	RFT1	chr3	53133502	-
intron-3UTR	ENST00000404397	ENST00000334047		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000404397	ENST00000370207		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-intron	ENST00000404397	ENST00000480356		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
3UTR-3UTR	ENST00000395323	ENST00000334047		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
3UTR-3UTR	ENST00000395323	ENST00000370207		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
3UTR-intron	ENST00000395323	ENST00000480356		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000406087	ENST00000334047		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000406087	ENST00000370207		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-intron	ENST00000406087	ENST00000480356		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000401506	ENST00000334047		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000401506	ENST00000370207		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-intron	ENST00000401506	ENST00000480356		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000467242	ENST00000334047		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000467242	ENST00000370207		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-intron	ENST00000467242	ENST00000480356		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000407930	ENST00000334047		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3UTR	ENST00000407930	ENST00000370207		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-intron	ENST00000407930	ENST00000480356		ChiTaRS3.1			BF109813	LBH	chr2	30482782	-	F3	chr1	94994974	+
intron-3CDS	ENST00000340635	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000340635	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000340635	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000360047	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000360047	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000360047	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
Frame-shit	ENST00000507116	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
Frame-shit	ENST00000507116	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
5CDS-intron	ENST00000507116	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000502484	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000502484	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000502484	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000546160	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000546160	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000546160	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
Frame-shit	ENST00000502575	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
Frame-shit	ENST00000502575	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
5CDS-intron	ENST00000502575	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000358923	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000358923	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000358923	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000503258	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000503258	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000503258	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000405755	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000405755	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000405755	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000317118	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000317118	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000317118	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000503947	ENST00000395347		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-3CDS	ENST00000503947	ENST00000395348		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-intron	ENST00000503947	ENST00000490066		ChiTaRS3.1			DB236218	PDE4D	chr5	59064071	-	SLC16A9	chr10	61424081	-
intron-5UTR	ENST00000585509	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000585509	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-intron	ENST00000585509	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000585509	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000589297	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000589297	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-intron	ENST00000589297	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000589297	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000591455	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000591455	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-intron	ENST00000591455	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000591455	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000446868	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000446868	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-intron	ENST00000446868	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000446868	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000361101	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000361101	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-intron	ENST00000361101	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000361101	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000589296	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000589296	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-intron	ENST00000589296	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
5CDS-5UTR	ENST00000589296	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000586175	ENST00000396516		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000586175	ENST00000355758		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-intron	ENST00000586175	ENST00000575984		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-5UTR	ENST00000586175	ENST00000575170		ChiTaRS3.1			CT002559	CYTH1	chr17	76778284	-	ZC3H7A	chr16	11876245	-
intron-3CDS	ENST00000532456	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000539648	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000528499	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000263574	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
intron-3CDS	ENST00000345598	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000338167	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000278756	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000543137	ENST00000374980		ChiTaRS3.1			BU543690	APLP2	chr11	129991623	+	EIF2S2	chr20	32693280	-
Frame-shit	ENST00000394196	ENST00000434316		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
5CDS-intron	ENST00000394196	ENST00000375391		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
5CDS-intron	ENST00000394196	ENST00000474393		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
Frame-shit	ENST00000557381	ENST00000434316		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
5CDS-intron	ENST00000557381	ENST00000375391		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
5CDS-intron	ENST00000557381	ENST00000474393		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
Frame-shit	ENST00000420239	ENST00000434316		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
5CDS-intron	ENST00000420239	ENST00000375391		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
5CDS-intron	ENST00000420239	ENST00000474393		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
intron-3CDS	ENST00000536619	ENST00000434316		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
intron-intron	ENST00000536619	ENST00000375391		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
intron-intron	ENST00000536619	ENST00000474393		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
3UTR-3CDS	ENST00000554122	ENST00000434316		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
3UTR-intron	ENST00000554122	ENST00000375391		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
3UTR-intron	ENST00000554122	ENST00000474393		ChiTaRS3.1			BQ644824	CHD2	chr15	93444530	+	TMCO3	chr13	114201613	+
Frame-shit	ENST00000264093	ENST00000601806		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000264093	ENST00000291281		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000264093	ENST00000433867		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000264093	ENST00000600194		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000264093	ENST00000595515		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
5CDS-intron	ENST00000264093	ENST00000593492		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000348222	ENST00000601806		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000348222	ENST00000291281		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000348222	ENST00000433867		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000348222	ENST00000600194		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000348222	ENST00000595515		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
5CDS-intron	ENST00000348222	ENST00000593492		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
3UTR-3CDS	ENST00000462685	ENST00000601806		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
3UTR-3CDS	ENST00000462685	ENST00000291281		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
3UTR-3CDS	ENST00000462685	ENST00000433867		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
3UTR-3CDS	ENST00000462685	ENST00000600194		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
3UTR-3CDS	ENST00000462685	ENST00000595515		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
3UTR-intron	ENST00000462685	ENST00000593492		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000356837	ENST00000601806		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000356837	ENST00000291281		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000356837	ENST00000433867		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000356837	ENST00000600194		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
Frame-shit	ENST00000356837	ENST00000595515		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
5CDS-intron	ENST00000356837	ENST00000593492		ChiTaRS3.1			BM750642	DGUOK	chr2	74185304	+	PRKD2	chr19	47201109	-
5UTR-5UTR	ENST00000333206	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000333206	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000420878	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000420878	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000589178	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000589178	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000383091	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-5UTR	ENST00000383091	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000601405	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000601405	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000592278	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000592278	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000588832	ENST00000378609		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
intron-5UTR	ENST00000588832	ENST00000472614		ChiTaRS3.1			BF203521	ZSCAN30	chr18	32870048	-	GNB1	chr1	1770678	-
5UTR-3CDS	ENST00000372695	ENST00000395002		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372695	ENST00000264344		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372695	ENST00000503556		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372695	ENST00000511976		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372695	ENST00000508369		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372695	ENST00000513837		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-intron	ENST00000372695	ENST00000502459		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-intron	ENST00000372695	ENST00000509094		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-intron	ENST00000372695	ENST00000515600		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372691	ENST00000395002		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372691	ENST00000264344		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372691	ENST00000503556		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372691	ENST00000511976		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372691	ENST00000508369		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-3CDS	ENST00000372691	ENST00000513837		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-intron	ENST00000372691	ENST00000502459		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-intron	ENST00000372691	ENST00000509094		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5UTR-intron	ENST00000372691	ENST00000515600		ChiTaRS3.1			DA786663	BEX4	chrX	102470153	+	FAM13A	chr4	89671738	-
5CDS-3UTR	ENST00000256216	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000256216	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000256216	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000515320	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000515320	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000515320	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000510025	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000510025	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000510025	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000504811	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000504811	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000504811	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000414835	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000414835	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000414835	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000513628	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000513628	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000513628	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000509514	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000509514	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
5CDS-3UTR	ENST00000509514	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
3UTR-3UTR	ENST00000522415	ENST00000539941		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
3UTR-3UTR	ENST00000522415	ENST00000268717		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
3UTR-3UTR	ENST00000522415	ENST00000439936		ChiTaRS3.1			BF033554	HSD17B4	chr5	118865606	+	COPS3	chr17	17150317	-
intron-3UTR	ENST00000330978	ENST00000225655		ChiTaRS3.1			BU175097	BOLA2	chr16	29820056	+	PFN1	chr17	4849160	-
intron-3UTR	ENST00000330978	ENST00000574872		ChiTaRS3.1			BU175097	BOLA2	chr16	29820056	+	PFN1	chr17	4849160	-
intron-3UTR	ENST00000452722	ENST00000354329		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-5UTR	ENST00000452722	ENST00000529578		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000452722	ENST00000533112		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000452722	ENST00000531253		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000452722	ENST00000527372		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537140	ENST00000354329		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-5UTR	ENST00000537140	ENST00000529578		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537140	ENST00000533112		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537140	ENST00000531253		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537140	ENST00000527372		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000542447	ENST00000354329		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-5UTR	ENST00000542447	ENST00000529578		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000542447	ENST00000533112		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000542447	ENST00000531253		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000542447	ENST00000527372		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537058	ENST00000354329		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-5UTR	ENST00000537058	ENST00000529578		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537058	ENST00000533112		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537058	ENST00000531253		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000537058	ENST00000527372		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000536727	ENST00000354329		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-5UTR	ENST00000536727	ENST00000529578		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000536727	ENST00000533112		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000536727	ENST00000531253		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000536727	ENST00000527372		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000331581	ENST00000354329		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-5UTR	ENST00000331581	ENST00000529578		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000331581	ENST00000533112		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000331581	ENST00000531253		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000331581	ENST00000527372		ChiTaRS3.1			BG271776	CADM1	chr11	115044438	+	MYO18A	chr17	27400731	+
intron-3UTR	ENST00000479871	ENST00000295628		ChiTaRS3.1			BQ020441	POLE3	chr9	116169848	+	LRRC58	chr3	120044647	+
intron-3UTR	ENST00000374169	ENST00000295628		ChiTaRS3.1			BQ020441	POLE3	chr9	116169848	+	LRRC58	chr3	120044647	+
intron-3UTR	ENST00000374171	ENST00000295628		ChiTaRS3.1			BQ020441	POLE3	chr9	116169848	+	LRRC58	chr3	120044647	+
intron-intron	ENST00000245441	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000245441	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000245441	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000245441	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000389868	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000389868	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000389868	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000389868	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000530997	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000530997	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000530997	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000530997	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382043	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382043	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382043	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382043	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382041	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382041	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382041	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000382041	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000324330	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000324330	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000324330	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000324330	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000453196	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000453196	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000453196	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000453196	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000486200	ENST00000312943		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000486200	ENST00000377112		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000486200	ENST00000357198		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
intron-intron	ENST00000486200	ENST00000501403		ChiTaRS3.1			BX644492	NIN	chr14	51226826	-	DOK3	chr5	176931206	-
5UTR-intron	ENST00000332149	ENST00000398907		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398905		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000288319		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398897		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398911		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000398910		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000417133		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000442448		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000453032		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000398919		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000429727		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000485493		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398907		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398905		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000288319		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398897		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398911		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000398910		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000417133		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000442448		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000453032		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000398919		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000429727		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000485493		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398907		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398905		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000288319		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398897		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398911		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000398910		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000417133		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000442448		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000453032		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000398919		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000429727		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000485493		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398907		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398905		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000288319		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398897		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398911		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000398910		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000417133		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000442448		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000453032		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000398919		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000429727		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000485493		ChiTaRS3.1			DQ204773	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-3CDS	ENST00000330978	ENST00000356015		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-3CDS	ENST00000330978	ENST00000432560		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-3CDS	ENST00000330978	ENST00000357586		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-3CDS	ENST00000330978	ENST00000405198		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-3CDS	ENST00000330978	ENST00000317368		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-3CDS	ENST00000330978	ENST00000402502		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-3CDS	ENST00000330978	ENST00000415447		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
intron-intron	ENST00000330978	ENST00000472057		ChiTaRS3.1			AI394032	BOLA2	chr16	29859133	-	AP1B1	chr22	29754725	+
5CDS-intron	ENST00000332050	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398907		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398905		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000288319		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398897		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398911		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398910		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000417133		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000442448		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000453032		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398919		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000429727		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000485493		ChiTaRS3.1			S72621	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
intron-intron	ENST00000324461	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000324461	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000324461	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000588797	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000588797	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000588797	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000586976	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000586976	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000586976	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000590950	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000590950	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000590950	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000593268	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000593268	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000593268	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000593164	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000593164	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000593164	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000310738	ENST00000296597		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000310738	ENST00000511107		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
3UTR-intron	ENST00000310738	ENST00000512623		ChiTaRS3.1			BM688312	ZNF283	chr19	44341427	+	NDUFAF2	chr5	60243591	-
intron-intron	ENST00000356341	ENST00000341170		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000354801		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000484708		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000341170		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000354801		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000484708		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000341170		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000354801		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000484708		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000341170		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000354801		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000484708		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000341170		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000354801		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000484708		ChiTaRS3.1			AW856679	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
5CDS-intron	ENST00000341845	ENST00000453363		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000341845	ENST00000316193		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000341845	ENST00000329882		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000430046	ENST00000453363		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000430046	ENST00000316193		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000430046	ENST00000329882		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000512348	ENST00000453363		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000512348	ENST00000316193		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-intron	ENST00000512348	ENST00000329882		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
intron-intron	ENST00000287761	ENST00000453363		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
intron-intron	ENST00000287761	ENST00000316193		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
intron-intron	ENST00000287761	ENST00000329882		ChiTaRS3.1			AK056770	FCHO2	chr5	72377774	+	CSH1	chr17	61973114	-
5CDS-3UTR	ENST00000344063	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000344063	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000344063	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000431533	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000431533	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000431533	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000428193	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000428193	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000428193	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000558815	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558815	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558815	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000560583	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560583	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560583	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000560055	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560055	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000560055	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000559463	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000559463	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000559463	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000558131	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558131	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558131	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000558752	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558752	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000558752	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-3UTR	ENST00000458349	ENST00000318008		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000458349	ENST00000433206		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
5CDS-intron	ENST00000458349	ENST00000435347		ChiTaRS3.1			BE387849	RPL28	chr19	55897775	+	LASP1	chr17	37076280	+
intron-5UTR	ENST00000539437	ENST00000318607		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000539437	ENST00000519004		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000539437	ENST00000522387		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000539437	ENST00000519596		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000268151	ENST00000318607		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000268151	ENST00000519004		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000268151	ENST00000522387		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000268151	ENST00000519596		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000268150	ENST00000318607		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000268150	ENST00000519004		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000268150	ENST00000522387		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000268150	ENST00000519596		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000566497	ENST00000318607		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000566497	ENST00000519004		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000566497	ENST00000522387		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000566497	ENST00000519596		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000542878	ENST00000318607		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000542878	ENST00000519004		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000542878	ENST00000522387		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000542878	ENST00000519596		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000559997	ENST00000318607		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000559997	ENST00000519004		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-5UTR	ENST00000559997	ENST00000522387		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000559997	ENST00000519596		ChiTaRS3.1			AW629981	MFGE8	chr15	89445796	-	PABPC1	chr8	101733960	-
intron-intron	ENST00000412770	ENST00000554962		ChiTaRS3.1			BQ432991	PPP6R1	chr19	55741855	-	SOHLH2	chr13	36742478	-
intron-3UTR	ENST00000412770	ENST00000379881		ChiTaRS3.1			BQ432991	PPP6R1	chr19	55741855	-	SOHLH2	chr13	36742478	-
intron-intron	ENST00000412770	ENST00000317764		ChiTaRS3.1			BQ432991	PPP6R1	chr19	55741855	-	SOHLH2	chr13	36742478	-
5CDS-intron	ENST00000587283	ENST00000554962		ChiTaRS3.1			BQ432991	PPP6R1	chr19	55741855	-	SOHLH2	chr13	36742478	-
5CDS-3UTR	ENST00000587283	ENST00000379881		ChiTaRS3.1			BQ432991	PPP6R1	chr19	55741855	-	SOHLH2	chr13	36742478	-
5CDS-intron	ENST00000587283	ENST00000317764		ChiTaRS3.1			BQ432991	PPP6R1	chr19	55741855	-	SOHLH2	chr13	36742478	-
intron-3CDS	ENST00000318607	ENST00000318607		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000318607	ENST00000519004		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000318607	ENST00000522387		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-5UTR	ENST00000318607	ENST00000519596		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000519004	ENST00000318607		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000519004	ENST00000519004		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000519004	ENST00000522387		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-5UTR	ENST00000519004	ENST00000519596		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000522387	ENST00000318607		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000522387	ENST00000519004		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000522387	ENST00000522387		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-5UTR	ENST00000522387	ENST00000519596		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000519596	ENST00000318607		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000519596	ENST00000519004		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-3CDS	ENST00000519596	ENST00000522387		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
intron-5UTR	ENST00000519596	ENST00000519596		ChiTaRS3.1			AW880952	PABPC1	chr8	101721812	-	PABPC1	chr8	101725017	-
3UTR-3UTR	ENST00000306562	ENST00000415912		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
3UTR-intron	ENST00000306562	ENST00000357071		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
3UTR-intron	ENST00000306562	ENST00000374893		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
3UTR-intron	ENST00000306562	ENST00000436918		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
3UTR-intron	ENST00000306562	ENST00000264205		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
3UTR-intron	ENST00000306562	ENST00000528294		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-3UTR	ENST00000502697	ENST00000415912		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-intron	ENST00000502697	ENST00000357071		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-intron	ENST00000502697	ENST00000374893		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-intron	ENST00000502697	ENST00000436918		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-intron	ENST00000502697	ENST00000264205		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-intron	ENST00000502697	ENST00000528294		ChiTaRS3.1			BE336604	ZNF672	chr1	249143229	+	ECE1	chr1	21544929	-
intron-5UTR	ENST00000458659	ENST00000382199		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000458659	ENST00000421047		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000458659	ENST00000457616		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000458659	ENST00000346192		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000458659	ENST00000494906		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-5UTR	ENST00000501704	ENST00000382199		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000501704	ENST00000421047		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000501704	ENST00000457616		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000501704	ENST00000346192		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000501704	ENST00000494906		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-5UTR	ENST00000261489	ENST00000382199		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000261489	ENST00000421047		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000261489	ENST00000457616		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000261489	ENST00000346192		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000261489	ENST00000494906		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-5UTR	ENST00000460842	ENST00000382199		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000460842	ENST00000421047		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000460842	ENST00000457616		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000460842	ENST00000346192		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-intron	ENST00000460842	ENST00000494906		ChiTaRS3.1			AF057352	TSC22D1	chr13	45076855	-	IGF2BP2	chr3	185542812	-
intron-5UTR	ENST00000384756	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384756	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384756	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000364799	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000364799	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000364799	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000384693	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384693	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384693	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
5CDS-5UTR	ENST00000383926	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
5CDS-intron	ENST00000383926	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
5CDS-intron	ENST00000383926	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000516331	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000516331	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000516331	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000384706	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384706	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384706	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000363981	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000363981	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000363981	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000384147	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384147	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000384147	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000365607	ENST00000320631		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000365607	ENST00000359393		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-intron	ENST00000365607	ENST00000488711		ChiTaRS3.1			DB092887	SNHG1	chr11	62621379	-	EHD1	chr11	64646051	-
intron-5UTR	ENST00000495893	ENST00000580599		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000495893	ENST00000394638		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000495893	ENST00000269053		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-3UTR	ENST00000495893	ENST00000394637		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-5UTR	ENST00000494943	ENST00000580599		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000494943	ENST00000394638		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000494943	ENST00000269053		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-3UTR	ENST00000494943	ENST00000394637		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-5UTR	ENST00000467570	ENST00000580599		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000467570	ENST00000394638		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000467570	ENST00000269053		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-3UTR	ENST00000467570	ENST00000394637		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-5UTR	ENST00000474275	ENST00000580599		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000474275	ENST00000394638		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000474275	ENST00000269053		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-3UTR	ENST00000474275	ENST00000394637		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-5UTR	ENST00000497658	ENST00000580599		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000497658	ENST00000394638		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000497658	ENST00000269053		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-3UTR	ENST00000497658	ENST00000394637		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-5UTR	ENST00000481639	ENST00000580599		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000481639	ENST00000394638		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-intron	ENST00000481639	ENST00000269053		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
intron-3UTR	ENST00000481639	ENST00000394637		ChiTaRS3.1			AK302371	PHC3	chr3	169847066	-	SPACA3	chr17	31322450	+
3UTR-3CDS	ENST00000314332	ENST00000375807		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000314332	ENST00000339901		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000314332	ENST00000534113		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-intron	ENST00000314332	ENST00000470305		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000396984	ENST00000375807		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000396984	ENST00000339901		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000396984	ENST00000534113		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-intron	ENST00000396984	ENST00000470305		ChiTaRS3.1			BI767701	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000220913	ENST00000420886		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
3UTR-3CDS	ENST00000220913	ENST00000267176		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
3UTR-3CDS	ENST00000220913	ENST00000602750		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
3UTR-3CDS	ENST00000220913	ENST00000602398		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
intron-3CDS	ENST00000519533	ENST00000420886		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
intron-3CDS	ENST00000519533	ENST00000267176		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
intron-3CDS	ENST00000519533	ENST00000602750		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
intron-3CDS	ENST00000519533	ENST00000602398		ChiTaRS3.1			AI652957	CHRAC1	chr8	141526693	-	SBNO1	chr12	123794056	+
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			AW238296	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3CDS	ENST00000489520	ENST00000338034		ChiTaRS3.1			BC046924	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000395962		ChiTaRS3.1			BC046924	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000426905		ChiTaRS3.1			BC046924	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000609345		ChiTaRS3.1			BC046924	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000578071		ChiTaRS3.1			BC046924	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
5UTR-3CDS	ENST00000265295	ENST00000429927		ChiTaRS3.1			CB139392	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
5UTR-3CDS	ENST00000265295	ENST00000307465		ChiTaRS3.1			CB139392	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
3UTR-3CDS	ENST00000510751	ENST00000429927		ChiTaRS3.1			CB139392	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
3UTR-3CDS	ENST00000510751	ENST00000307465		ChiTaRS3.1			CB139392	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
intron-intron	ENST00000481781	ENST00000452313		ChiTaRS3.1			BQ647417	INS-IGF2	chr11	2151083	-	NPIPB7	chr16	28734520	+
intron-intron	ENST00000397270	ENST00000452313		ChiTaRS3.1			BQ647417	INS-IGF2	chr11	2151083	-	NPIPB7	chr16	28734520	+
intron-3CDS	ENST00000204726	ENST00000337859		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000204726	ENST00000544130		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000204726	ENST00000468120		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-3CDS	ENST00000450791	ENST00000337859		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000450791	ENST00000544130		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000450791	ENST00000468120		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-3CDS	ENST00000456883	ENST00000337859		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000456883	ENST00000544130		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000456883	ENST00000468120		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-3CDS	ENST00000537452	ENST00000337859		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000537452	ENST00000544130		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000537452	ENST00000468120		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-3CDS	ENST00000545875	ENST00000337859		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000545875	ENST00000544130		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000545875	ENST00000468120		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-3CDS	ENST00000534967	ENST00000337859		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000534967	ENST00000544130		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
intron-intron	ENST00000534967	ENST00000468120		ChiTaRS3.1			BQ946452	GOLGA3	chr12	133402787	-	ZC3H15	chr2	187367285	+
In-frame	ENST00000358731	ENST00000399788		ChiTaRS3.1			CB119428	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5CDS-intron	ENST00000358731	ENST00000540838		ChiTaRS3.1			CB119428	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5CDS-intron	ENST00000358731	ENST00000382815		ChiTaRS3.1			CB119428	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5UTR-3CDS	ENST00000380675	ENST00000399788		ChiTaRS3.1			CB119428	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5UTR-intron	ENST00000380675	ENST00000540838		ChiTaRS3.1			CB119428	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
5UTR-intron	ENST00000380675	ENST00000382815		ChiTaRS3.1			CB119428	BDP1	chr5	70811993	+	KDM5A	chr12	402303	-
intron-3UTR	ENST00000520408	ENST00000370818		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000520408	ENST00000394299		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-intron	ENST00000520408	ENST00000543339		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
3UTR-3UTR	ENST00000310430	ENST00000370818		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
3UTR-3UTR	ENST00000310430	ENST00000394299		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
3UTR-intron	ENST00000310430	ENST00000543339		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000518281	ENST00000370818		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000518281	ENST00000394299		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-intron	ENST00000518281	ENST00000543339		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000522110	ENST00000370818		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000522110	ENST00000394299		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-intron	ENST00000522110	ENST00000543339		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000518027	ENST00000370818		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3UTR	ENST00000518027	ENST00000394299		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-intron	ENST00000518027	ENST00000543339		ChiTaRS3.1			R64084	TNKS	chr8	9637105	+	GPC3	chrX	132669842	-
intron-3CDS	ENST00000341832	ENST00000441788		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000341832	ENST00000313639		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000341832	ENST00000395095		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000340677	ENST00000441788		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000340677	ENST00000313639		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000340677	ENST00000395095		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000407249	ENST00000441788		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000407249	ENST00000313639		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000407249	ENST00000395095		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000317673	ENST00000441788		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000317673	ENST00000313639		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
intron-3CDS	ENST00000317673	ENST00000395095		ChiTaRS3.1			BI905981	CDK11B	chr1	1643811	-	FZR1	chr19	3525948	+
Frame-shit	ENST00000541529	ENST00000304271		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
5CDS-intron	ENST00000541529	ENST00000533310		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
5CDS-5UTR	ENST00000541529	ENST00000530166		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
Frame-shit	ENST00000270776	ENST00000304271		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
5CDS-intron	ENST00000270776	ENST00000533310		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
5CDS-5UTR	ENST00000270776	ENST00000530166		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
Frame-shit	ENST00000538557	ENST00000304271		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
5CDS-intron	ENST00000538557	ENST00000533310		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
5CDS-5UTR	ENST00000538557	ENST00000530166		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
intron-3CDS	ENST00000498356	ENST00000304271		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
intron-intron	ENST00000498356	ENST00000533310		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
intron-5UTR	ENST00000498356	ENST00000530166		ChiTaRS3.1			BF032755	PGD	chr1	10471601	+	C11orf24	chr11	68029941	-
intron-3CDS	ENST00000377387	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000377390	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000377394	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000227503	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000334944	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000422298	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000433274	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-3CDS	ENST00000489544	ENST00000369582		ChiTaRS3.1			AV747863	SF1	chr11	64536509	-	CGA	chr6	87797907	-
intron-5UTR	ENST00000390168	ENST00000450904		ChiTaRS3.1			R83431	H19	chr11	2016880	-	MRPL21	chr11	68671225	-
intron-5UTR	ENST00000390168	ENST00000362034		ChiTaRS3.1			R83431	H19	chr11	2016880	-	MRPL21	chr11	68671225	-
intron-5UTR	ENST00000390168	ENST00000567045		ChiTaRS3.1			R83431	H19	chr11	2016880	-	MRPL21	chr11	68671225	-
intron-3UTR	ENST00000355272	ENST00000288828		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000355272	ENST00000401525		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000355272	ENST00000404704		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-intron	ENST00000355272	ENST00000485854		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000355272	ENST00000382384		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000355272	ENST00000484262		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000356926	ENST00000288828		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000356926	ENST00000401525		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000356926	ENST00000404704		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-intron	ENST00000356926	ENST00000485854		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000356926	ENST00000382384		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000356926	ENST00000484262		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000350812	ENST00000288828		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000350812	ENST00000401525		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000350812	ENST00000404704		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-intron	ENST00000350812	ENST00000485854		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000350812	ENST00000382384		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000350812	ENST00000484262		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000345016	ENST00000288828		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000345016	ENST00000401525		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000345016	ENST00000404704		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-intron	ENST00000345016	ENST00000485854		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000345016	ENST00000382384		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000345016	ENST00000484262		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000590683	ENST00000288828		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000590683	ENST00000401525		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000590683	ENST00000404704		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-intron	ENST00000590683	ENST00000485854		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000590683	ENST00000382384		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
intron-3UTR	ENST00000590683	ENST00000484262		ChiTaRS3.1			AF130042	AP3D1	chr19	2117296	-	WIPI2	chr7	5270626	+
5CDS-3UTR	ENST00000366574	ENST00000316448		ChiTaRS3.1			BX501381	RYR2	chr1	237801769	+	CALR	chr19	13055184	+
5CDS-3UTR	ENST00000360064	ENST00000316448		ChiTaRS3.1			BX501381	RYR2	chr1	237801769	+	CALR	chr19	13055184	+
5CDS-3UTR	ENST00000542537	ENST00000316448		ChiTaRS3.1			BX501381	RYR2	chr1	237801769	+	CALR	chr19	13055184	+
intron-3UTR	ENST00000609119	ENST00000316448		ChiTaRS3.1			BX501381	RYR2	chr1	237801769	+	CALR	chr19	13055184	+
3UTR-3CDS	ENST00000530758	ENST00000369208		ChiTaRS3.1			DB024801	BRK1	chr3	10168138	+	SIM1	chr6	100841736	-
3UTR-3CDS	ENST00000530758	ENST00000262901		ChiTaRS3.1			DB024801	BRK1	chr3	10168138	+	SIM1	chr6	100841736	-
3UTR-3CDS	ENST00000256463	ENST00000369208		ChiTaRS3.1			DB024801	BRK1	chr3	10168138	+	SIM1	chr6	100841736	-
3UTR-3CDS	ENST00000256463	ENST00000262901		ChiTaRS3.1			DB024801	BRK1	chr3	10168138	+	SIM1	chr6	100841736	-
intron-5UTR	ENST00000378720	ENST00000296444		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378720	ENST00000444115		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378720	ENST00000426002		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378720	ENST00000465449		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378720	ENST00000442747		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378720	ENST00000443308		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-5UTR	ENST00000378697	ENST00000296444		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378697	ENST00000444115		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378697	ENST00000426002		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378697	ENST00000465449		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378697	ENST00000442747		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000378697	ENST00000443308		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-5UTR	ENST00000495654	ENST00000296444		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000495654	ENST00000444115		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000495654	ENST00000426002		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000495654	ENST00000465449		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000495654	ENST00000442747		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
intron-intron	ENST00000495654	ENST00000443308		ChiTaRS3.1			BG290854	ESD	chr13	47345560	-	SHISA5	chr3	48541579	-
5CDS-intron	ENST00000572555	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000572555	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000572555	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000572555	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000572555	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000395902	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000395902	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000395902	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395902	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000449552	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000449552	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000449552	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000449552	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000571708	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000571708	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000571708	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000571708	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-5UTR	ENST00000449697	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-3UTR	ENST00000449697	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-3UTR	ENST00000449697	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-intron	ENST00000449697	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000395671	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000395671	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000395671	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395671	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000395672	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000395672	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000395672	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000395672	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000432416		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000458426		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000425132		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-5UTR	ENST00000414850	ENST00000477919		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000414850	ENST00000411432		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-3UTR	ENST00000414850	ENST00000448007		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000272839		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000448823		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000406927		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000426075		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
5CDS-intron	ENST00000414850	ENST00000442521		ChiTaRS3.1			BM479642	TRIM16L	chr17	18638223	+	METTL21A	chr2	208476957	-
intron-3CDS	ENST00000393029	ENST00000323348		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000393029	ENST00000409849		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000393029	ENST00000410034		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-3CDS	ENST00000393028	ENST00000323348		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000393028	ENST00000409849		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000393028	ENST00000410034		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-3CDS	ENST00000345425	ENST00000323348		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000345425	ENST00000409849		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000345425	ENST00000410034		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-3CDS	ENST00000393033	ENST00000323348		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000393033	ENST00000409849		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000393033	ENST00000410034		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-3CDS	ENST00000591349	ENST00000323348		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000591349	ENST00000409849		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000591349	ENST00000410034		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-3CDS	ENST00000586027	ENST00000323348		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000586027	ENST00000409849		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
intron-intron	ENST00000586027	ENST00000410034		ChiTaRS3.1			DA368878	GIPC1	chr19	14593668	-	ANKZF1	chr2	220096694	+
Frame-shit	ENST00000367214	ENST00000520441		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000367214	ENST00000523377		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000367214	ENST00000517396		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000367214	ENST00000520318		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000367212	ENST00000520441		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000367212	ENST00000523377		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000367212	ENST00000517396		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000367212	ENST00000520318		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000332127	ENST00000520441		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000332127	ENST00000523377		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000332127	ENST00000517396		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000332127	ENST00000520318		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000545588	ENST00000520441		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000545588	ENST00000523377		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000545588	ENST00000517396		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000545588	ENST00000520318		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000367210	ENST00000520441		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
Frame-shit	ENST00000367210	ENST00000523377		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000367210	ENST00000517396		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
5CDS-5UTR	ENST00000367210	ENST00000520318		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
intron-3CDS	ENST00000466470	ENST00000520441		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
intron-3CDS	ENST00000466470	ENST00000523377		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
intron-5UTR	ENST00000466470	ENST00000517396		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
intron-5UTR	ENST00000466470	ENST00000520318		ChiTaRS3.1			BC046137	ZC3H11A	chr1	203816421	+	LYRM2	chr6	90347570	-
intron-3UTR	ENST00000536039	ENST00000373129		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000536039	ENST00000373130		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000536039	ENST00000373132		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000536039	ENST00000482458		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000536039	ENST00000359297		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000373129		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000373130		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000373132		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000437374	ENST00000482458		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000437374	ENST00000359297		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000373129		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000373130		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000373132		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000420381	ENST00000482458		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000420381	ENST00000359297		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000373129		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000373130		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000373132		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000428780	ENST00000482458		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000428780	ENST00000359297		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000373129		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000373130		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000373132		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-intron	ENST00000434470	ENST00000482458		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000434470	ENST00000359297		ChiTaRS3.1			CD742587	IDI2-AS1	chr10	1086345	+	STK40	chr1	36807142	+
intron-3UTR	ENST00000353331	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000353331	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000353331	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000353331	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000353331	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000353331	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000353331	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000531224	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000531224	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000531224	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000531224	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000531224	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000531224	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000531224	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000527536	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527536	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527536	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527536	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527536	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527536	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527536	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000530767	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000530767	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000530767	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000530767	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000530767	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000530767	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000530767	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000527759	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527759	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527759	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527759	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527759	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527759	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000527759	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000031135	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000031135	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000031135	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000031135	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000031135	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000031135	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000031135	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000529917	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000529917	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000529917	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000529917	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000529917	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000529917	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000529917	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-3UTR	ENST00000392348	ENST00000343348		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000392348	ENST00000257414		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000392348	ENST00000510263		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000392348	ENST00000513137		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000392348	ENST00000282394		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000392348	ENST00000503865		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
intron-intron	ENST00000392348	ENST00000503962		ChiTaRS3.1			AA738373	BCLAF1	chr6	136579982	+	SEMA6A	chr5	115779656	+
3UTR-3CDS	ENST00000374692	ENST00000400000		ChiTaRS3.1			AK000918	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3CDS	ENST00000374692	ENST00000340541		ChiTaRS3.1			AK000918	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3UTR	ENST00000374692	ENST00000584796		ChiTaRS3.1			AK000918	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3CDS	ENST00000374688	ENST00000400000		ChiTaRS3.1			AK000918	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3CDS	ENST00000374688	ENST00000340541		ChiTaRS3.1			AK000918	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
3UTR-3UTR	ENST00000374688	ENST00000584796		ChiTaRS3.1			AK000918	TMEM38B	chr9	108537390	+	VAPA	chr18	9931864	+
intron-intron	ENST00000217246	ENST00000290219		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000217246	ENST00000381995		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000217246	ENST00000405436		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000310348	ENST00000290219		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000310348	ENST00000381995		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000310348	ENST00000405436		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000464883	ENST00000290219		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000464883	ENST00000381995		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000464883	ENST00000405436		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000402914	ENST00000290219		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000402914	ENST00000381995		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000402914	ENST00000405436		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000378058	ENST00000290219		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000378058	ENST00000381995		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000378058	ENST00000405436		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000407045	ENST00000290219		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000407045	ENST00000381995		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000407045	ENST00000405436		ChiTaRS3.1			AW935044	MACROD2	chr20	15155996	-	IFNGR2	chr21	34821186	-
intron-intron	ENST00000241261	ENST00000540947		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000338718		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000541479		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000398354		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000326686		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000540579		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000535696		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000241261	ENST00000397205		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000540947		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000338718		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000541479		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000398354		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000326686		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000540579		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000535696		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-intron	ENST00000420541	ENST00000397205		ChiTaRS3.1			AI949486	TNFSF10	chr3	172223563	+	CES4A	chr16	67029732	-
intron-3CDS	ENST00000534768	ENST00000261195		ChiTaRS3.1			BG563177	SAA3P	chr11	18134292	-	GYS2	chr12	21690037	-
Frame-shit	ENST00000324932	ENST00000322536		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000324932	ENST00000526794		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
5CDS-intron	ENST00000324932	ENST00000534221		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000359171	ENST00000322536		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000359171	ENST00000526794		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
5CDS-intron	ENST00000359171	ENST00000534221		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000355260	ENST00000322536		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000355260	ENST00000526794		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
5CDS-intron	ENST00000355260	ENST00000534221		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000397004	ENST00000322536		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000397004	ENST00000526794		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
5CDS-intron	ENST00000397004	ENST00000534221		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000397007	ENST00000322536		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
Frame-shit	ENST00000397007	ENST00000526794		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
5CDS-intron	ENST00000397007	ENST00000534221		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
intron-3CDS	ENST00000488828	ENST00000322536		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
intron-3CDS	ENST00000488828	ENST00000526794		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
intron-intron	ENST00000488828	ENST00000534221		ChiTaRS3.1			AB000267	NUP98	chr11	3765739	-	DDX10	chr11	108550096	+
intron-3CDS	ENST00000536668	ENST00000260385		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000536668	ENST00000338376		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-5UTR	ENST00000536668	ENST00000558560		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000544994	ENST00000260385		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000544994	ENST00000338376		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-5UTR	ENST00000544994	ENST00000558560		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000228811	ENST00000260385		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000228811	ENST00000338376		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-5UTR	ENST00000228811	ENST00000558560		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000540107	ENST00000260385		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-3CDS	ENST00000540107	ENST00000338376		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
intron-5UTR	ENST00000540107	ENST00000558560		ChiTaRS3.1			DB200003	PRR4	chr12	10999907	-	RMDN3	chr15	41044311	-
Frame-shit	ENST00000330634	ENST00000249837		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000330634	ENST00000261517		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000330634	ENST00000395896		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000330634	ENST00000395898		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
5CDS-intron	ENST00000330634	ENST00000558919		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000398337	ENST00000249837		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000398337	ENST00000261517		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000398337	ENST00000395896		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000398337	ENST00000395898		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-intron	ENST00000398337	ENST00000558919		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000392634	ENST00000249837		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000392634	ENST00000261517		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000392634	ENST00000395896		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
Frame-shit	ENST00000392634	ENST00000395898		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
5CDS-intron	ENST00000392634	ENST00000558919		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000481338	ENST00000249837		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000481338	ENST00000261517		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000481338	ENST00000395896		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000481338	ENST00000395898		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-intron	ENST00000481338	ENST00000558919		ChiTaRS3.1			AA330277	INF2	chr14	105180854	+	VPS13C	chr15	62160970	-
intron-3CDS	ENST00000596435	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000596435	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000596435	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-3CDS	ENST00000344019	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000344019	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000344019	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-3CDS	ENST00000597551	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000597551	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000597551	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-3CDS	ENST00000204637	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000204637	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000204637	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-3CDS	ENST00000600429	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000600429	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000600429	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-3CDS	ENST00000594009	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000594009	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000594009	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-3CDS	ENST00000595510	ENST00000216146		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000595510	ENST00000465618		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
intron-5UTR	ENST00000595510	ENST00000401609		ChiTaRS3.1			BG505035	FLT3LG	chr19	49994778	+	RPL3	chr22	39709232	-
Frame-shit	ENST00000229268	ENST00000380516		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
5CDS-intron	ENST00000229268	ENST00000536328		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
5CDS-intron	ENST00000229268	ENST00000557950		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
Frame-shit	ENST00000389231	ENST00000380516		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
5CDS-intron	ENST00000389231	ENST00000536328		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
5CDS-intron	ENST00000389231	ENST00000557950		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
3UTR-3CDS	ENST00000541969	ENST00000380516		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
3UTR-intron	ENST00000541969	ENST00000536328		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
3UTR-intron	ENST00000541969	ENST00000557950		ChiTaRS3.1			AK308021	USP5	chr12	6970714	+	SLTM	chr15	59225850	-
intron-5UTR	ENST00000311713	ENST00000411589		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000359862		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000442938		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000544878		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000354284		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000529001		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000354064		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000311713	ENST00000533102		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000311713	ENST00000313236		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000311713	ENST00000524725		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000411589		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000359862		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000442938		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000544878		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000354284		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000529001		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000354064		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000278856	ENST00000533102		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000278856	ENST00000313236		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000278856	ENST00000524725		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000411589		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000359862		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000442938		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000544878		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000354284		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000529001		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000354064		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000529106	ENST00000533102		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000529106	ENST00000313236		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000529106	ENST00000524725		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000411589		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000359862		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000442938		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000544878		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000354284		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000529001		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000354064		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525239	ENST00000533102		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000525239	ENST00000313236		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000525239	ENST00000524725		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000411589		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000359862		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000442938		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000544878		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000354284		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000529001		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000354064		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000525752	ENST00000533102		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000525752	ENST00000313236		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000525752	ENST00000524725		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000411589		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000359862		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000442938		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000544878		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000354284		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000529001		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000354064		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-5UTR	ENST00000540620	ENST00000533102		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000540620	ENST00000313236		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
intron-intron	ENST00000540620	ENST00000524725		ChiTaRS3.1			DA396739	WDR74	chr11	62609096	-	TMEM25	chr11	118401916	+
5CDS-intron	ENST00000542434	ENST00000390381		ChiTaRS3.1			AK225603	ALOX5	chr10	45924120	+	TRBV5-1	chr7	142460859	+
5CDS-intron	ENST00000374391	ENST00000390381		ChiTaRS3.1			AK225603	ALOX5	chr10	45924120	+	TRBV5-1	chr7	142460859	+
intron-intron	ENST00000493336	ENST00000390381		ChiTaRS3.1			AK225603	ALOX5	chr10	45924120	+	TRBV5-1	chr7	142460859	+
3UTR-intron	ENST00000288699	ENST00000604011		ChiTaRS3.1			AI655301	DPYSL5	chr2	27173044	-	RNF103-CHMP3	chr2	86831082	+
intron-intron	ENST00000401478	ENST00000604011		ChiTaRS3.1			AI655301	DPYSL5	chr2	27173044	-	RNF103-CHMP3	chr2	86831082	+
intron-3CDS	ENST00000555656	ENST00000368868		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-3CDS	ENST00000555656	ENST00000447402		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-3CDS	ENST00000555656	ENST00000426705		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-5UTR	ENST00000555656	ENST00000435071		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-5UTR	ENST00000555656	ENST00000473693		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
Frame-shit	ENST00000206542	ENST00000368868		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
Frame-shit	ENST00000206542	ENST00000447402		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
Frame-shit	ENST00000206542	ENST00000426705		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5CDS-5UTR	ENST00000206542	ENST00000435071		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5CDS-5UTR	ENST00000206542	ENST00000473693		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-3CDS	ENST00000554249	ENST00000368868		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-3CDS	ENST00000554249	ENST00000447402		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-3CDS	ENST00000554249	ENST00000426705		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-5UTR	ENST00000554249	ENST00000435071		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
intron-5UTR	ENST00000554249	ENST00000473693		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5UTR-3CDS	ENST00000556252	ENST00000368868		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5UTR-3CDS	ENST00000556252	ENST00000447402		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5UTR-3CDS	ENST00000556252	ENST00000426705		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5UTR-5UTR	ENST00000556252	ENST00000435071		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
5UTR-5UTR	ENST00000556252	ENST00000473693		ChiTaRS3.1			DA879055	OSGEP	chr14	20922728	-	SELENBP1	chr1	151342250	-
In-frame	ENST00000285116	ENST00000441750		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
In-frame	ENST00000285116	ENST00000281513		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
In-frame	ENST00000398452	ENST00000441750		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
In-frame	ENST00000398452	ENST00000281513		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
In-frame	ENST00000417656	ENST00000441750		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
In-frame	ENST00000417656	ENST00000281513		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
5UTR-3CDS	ENST00000488454	ENST00000441750		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
5UTR-3CDS	ENST00000488454	ENST00000281513		ChiTaRS3.1			BE618276	SKA1	chr18	47902288	+	NBAS	chr2	15449372	-
3UTR-3UTR	ENST00000381923	ENST00000397130		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
3UTR-3UTR	ENST00000381923	ENST00000323443		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
3UTR-3UTR	ENST00000381923	ENST00000563454		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
intron-3UTR	ENST00000545924	ENST00000397130		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
intron-3UTR	ENST00000545924	ENST00000323443		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
intron-3UTR	ENST00000545924	ENST00000563454		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
3UTR-3UTR	ENST00000298530	ENST00000397130		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
3UTR-3UTR	ENST00000298530	ENST00000323443		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
3UTR-3UTR	ENST00000298530	ENST00000563454		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
intron-3UTR	ENST00000536952	ENST00000397130		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
intron-3UTR	ENST00000536952	ENST00000323443		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
intron-3UTR	ENST00000536952	ENST00000563454		ChiTaRS3.1			CB529977	TMEM52B	chr12	10344076	-	LRRC57	chr15	42835665	+
3UTR-3UTR	ENST00000534336	ENST00000299084		ChiTaRS3.1			AA774258	MALAT1	chr11	65269819	+	SPRED1	chr15	38643887	+
3UTR-intron	ENST00000534336	ENST00000561205		ChiTaRS3.1			AA774258	MALAT1	chr11	65269819	+	SPRED1	chr15	38643887	+
intron-3CDS	ENST00000239926	ENST00000409843		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000239926	ENST00000409830		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000410051		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000479019		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000409805		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000359135		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000409580		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000409637		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000239926	ENST00000409609		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000421631	ENST00000409843		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000421631	ENST00000409830		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000410051		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000479019		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000409805		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000359135		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000409580		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000409637		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000421631	ENST00000409609		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000509812	ENST00000409843		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000509812	ENST00000409830		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000410051		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000479019		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000409805		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000359135		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000409580		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000409637		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000509812	ENST00000409609		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000515645	ENST00000409843		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3CDS	ENST00000515645	ENST00000409830		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000410051		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000479019		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000409805		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000359135		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000409580		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000409637		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-intron	ENST00000515645	ENST00000409609		ChiTaRS3.1			BE972596	MYOT	chr5	137089242	-	GULP1	chr2	189433968	+
intron-3UTR	ENST00000371348	ENST00000331222		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371348	ENST00000523237		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000371344	ENST00000331222		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371344	ENST00000523237		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000234831	ENST00000331222		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000234831	ENST00000523237		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000371341	ENST00000331222		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371341	ENST00000523237		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000470395	ENST00000331222		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000470395	ENST00000523237		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-3UTR	ENST00000371337	ENST00000331222		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
intron-intron	ENST00000371337	ENST00000523237		ChiTaRS3.1			AA368223	TMEM59	chr1	54518839	-	CLN8	chr8	1730942	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			BE813702	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000302362	ENST00000373095		ChiTaRS3.1			BQ180870	COPRS	chr17	30180022	+	FAM102A	chr9	130703309	+
intron-3UTR	ENST00000302362	ENST00000373084		ChiTaRS3.1			BQ180870	COPRS	chr17	30180022	+	FAM102A	chr9	130703309	+
intron-5UTR	ENST00000302362	ENST00000300434		ChiTaRS3.1			BQ180870	COPRS	chr17	30180022	+	FAM102A	chr9	130703309	+
intron-3UTR	ENST00000378634	ENST00000373095		ChiTaRS3.1			BQ180870	COPRS	chr17	30180022	+	FAM102A	chr9	130703309	+
intron-3UTR	ENST00000378634	ENST00000373084		ChiTaRS3.1			BQ180870	COPRS	chr17	30180022	+	FAM102A	chr9	130703309	+
intron-5UTR	ENST00000378634	ENST00000300434		ChiTaRS3.1			BQ180870	COPRS	chr17	30180022	+	FAM102A	chr9	130703309	+
3UTR-intron	ENST00000434536	ENST00000434536		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000434536	ENST00000252512		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000434536	ENST00000518017		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000434536	ENST00000433566		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000252512	ENST00000434536		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000252512	ENST00000252512		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000252512	ENST00000518017		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000252512	ENST00000433566		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
intron-intron	ENST00000518017	ENST00000434536		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
intron-intron	ENST00000518017	ENST00000252512		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
intron-intron	ENST00000518017	ENST00000518017		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
intron-intron	ENST00000518017	ENST00000433566		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000433566	ENST00000434536		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000433566	ENST00000252512		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000433566	ENST00000518017		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
3UTR-intron	ENST00000433566	ENST00000433566		ChiTaRS3.1			AI444618	XPO7	chr8	21863041	+	XPO7	chrMT	374	-
intron-3CDS	ENST00000392038	ENST00000257899		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000392038	ENST00000548925		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000392038	ENST00000549147		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000392038	ENST00000547076		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000392038	ENST00000551926		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000392038	ENST00000548556		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000424901	ENST00000257899		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000424901	ENST00000548925		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000424901	ENST00000549147		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000424901	ENST00000547076		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000424901	ENST00000551926		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000424901	ENST00000548556		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000311278	ENST00000257899		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000311278	ENST00000548925		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000311278	ENST00000549147		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000311278	ENST00000547076		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000311278	ENST00000551926		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000311278	ENST00000548556		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000579047	ENST00000257899		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000579047	ENST00000548925		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000579047	ENST00000549147		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000579047	ENST00000547076		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000579047	ENST00000551926		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000579047	ENST00000548556		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000581582	ENST00000257899		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000581582	ENST00000548925		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000581582	ENST00000549147		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000581582	ENST00000547076		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000581582	ENST00000551926		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-3CDS	ENST00000581582	ENST00000548556		ChiTaRS3.1			BM692309	AKT2	chr19	40738367	-	BLOC1S1	chr12	56112963	+
intron-5UTR	ENST00000384756	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384756	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384756	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000364799	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000364799	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000364799	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000384693	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384693	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384693	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
5CDS-5UTR	ENST00000383926	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
5CDS-intron	ENST00000383926	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
5CDS-intron	ENST00000383926	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000516331	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000516331	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000516331	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000384706	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384706	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384706	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000363981	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000363981	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000363981	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000384147	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384147	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000384147	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-5UTR	ENST00000365607	ENST00000379516		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000365607	ENST00000514949		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-intron	ENST00000365607	ENST00000510372		ChiTaRS3.1			DC338761	SNHG1	chr11	62621380	-	SNX2	chr5	122110701	+
intron-3CDS	ENST00000446906	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000446906	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000446906	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000446906	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000446906	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000446906	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377072	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377072	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377072	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377072	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377072	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000377072	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000307729	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000307729	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000307729	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000307729	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000307729	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000307729	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377059	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377059	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377059	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377059	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377059	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000377059	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000495130	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000495130	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000495130	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000495130	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000495130	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000495130	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377100	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377100	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377100	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377100	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377100	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000377100	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377091	ENST00000532317		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377091	ENST00000526033		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377091	ENST00000393346		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377091	ENST00000528398		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3CDS	ENST00000377091	ENST00000356360		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-intron	ENST00000377091	ENST00000528411		ChiTaRS3.1			AF060929	MLLT10	chr10	21860955	+	PICALM	chr11	85685857	-
intron-3UTR	ENST00000534348	ENST00000497753		ChiTaRS3.1			CA309107	NEDD8-MDP1	chr14	24701536	+	ARV1	chr1	231131614	-
intron-3UTR	ENST00000534348	ENST00000310256		ChiTaRS3.1			CA309107	NEDD8-MDP1	chr14	24701536	+	ARV1	chr1	231131614	-
intron-3UTR	ENST00000534348	ENST00000366658		ChiTaRS3.1			CA309107	NEDD8-MDP1	chr14	24701536	+	ARV1	chr1	231131614	-
intron-3UTR	ENST00000604306	ENST00000497753		ChiTaRS3.1			CA309107	NEDD8-MDP1	chr14	24701536	+	ARV1	chr1	231131614	-
intron-3UTR	ENST00000604306	ENST00000310256		ChiTaRS3.1			CA309107	NEDD8-MDP1	chr14	24701536	+	ARV1	chr1	231131614	-
intron-3UTR	ENST00000604306	ENST00000366658		ChiTaRS3.1			CA309107	NEDD8-MDP1	chr14	24701536	+	ARV1	chr1	231131614	-
intron-intron	ENST00000360416	ENST00000536122		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000268699		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000540721		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000536122		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000268699		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000540721		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000536122		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000268699		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000540721		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000536122		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000268699		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000540721		ChiTaRS3.1			BE153143	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-5UTR	ENST00000263918	ENST00000295754		ChiTaRS3.1			D50683	STRN	chr2	37096015	-	TGFBR2	chr3	30648321	+
intron-5UTR	ENST00000263918	ENST00000359013		ChiTaRS3.1			D50683	STRN	chr2	37096015	-	TGFBR2	chr3	30648321	+
intron-5UTR	ENST00000379213	ENST00000295754		ChiTaRS3.1			D50683	STRN	chr2	37096015	-	TGFBR2	chr3	30648321	+
intron-5UTR	ENST00000379213	ENST00000359013		ChiTaRS3.1			D50683	STRN	chr2	37096015	-	TGFBR2	chr3	30648321	+
intron-3CDS	ENST00000233813	ENST00000394249		ChiTaRS3.1			BM718742	IGFBP5	chr2	217537322	-	PRC1	chr15	91524880	-
intron-3CDS	ENST00000233813	ENST00000361919		ChiTaRS3.1			BM718742	IGFBP5	chr2	217537322	-	PRC1	chr15	91524880	-
intron-3CDS	ENST00000233813	ENST00000361188		ChiTaRS3.1			BM718742	IGFBP5	chr2	217537322	-	PRC1	chr15	91524880	-
intron-3CDS	ENST00000233813	ENST00000442656		ChiTaRS3.1			BM718742	IGFBP5	chr2	217537322	-	PRC1	chr15	91524880	-
intron-intron	ENST00000233813	ENST00000556129		ChiTaRS3.1			BM718742	IGFBP5	chr2	217537322	-	PRC1	chr15	91524880	-
intron-intron	ENST00000378720	ENST00000464527		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000378720	ENST00000445927		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000378720	ENST00000294947		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000378697	ENST00000464527		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000378697	ENST00000445927		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000378697	ENST00000294947		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000495654	ENST00000464527		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000495654	ENST00000445927		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-intron	ENST00000495654	ENST00000294947		ChiTaRS3.1			BF700255	ESD	chr13	47364763	-	C2orf61	chr2	47389680	-
intron-5UTR	ENST00000366844	ENST00000225964		ChiTaRS3.1			CN342237	ENAH	chr1	225687456	-	COL1A1	chr17	48278951	-
intron-5UTR	ENST00000366843	ENST00000225964		ChiTaRS3.1			CN342237	ENAH	chr1	225687456	-	COL1A1	chr17	48278951	-
intron-5UTR	ENST00000284563	ENST00000225964		ChiTaRS3.1			CN342237	ENAH	chr1	225687456	-	COL1A1	chr17	48278951	-
intron-5UTR	ENST00000391874	ENST00000225964		ChiTaRS3.1			CN342237	ENAH	chr1	225687456	-	COL1A1	chr17	48278951	-
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			AW993976	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3CDS	ENST00000330978	ENST00000511912		ChiTaRS3.1			BE172552	BOLA2	chr16	29831211	-	ETFDH	chr4	159627945	+
intron-intron	ENST00000330978	ENST00000510353		ChiTaRS3.1			BE172552	BOLA2	chr16	29831211	-	ETFDH	chr4	159627945	+
intron-intron	ENST00000330978	ENST00000307738		ChiTaRS3.1			BE172552	BOLA2	chr16	29831211	-	ETFDH	chr4	159627945	+
intron-3CDS	ENST00000450514	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000450514	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000450514	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000450514	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000422366	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000422366	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000422366	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000422366	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000427196	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000427196	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000427196	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000427196	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000442228	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000442228	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000442228	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000442228	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000425999	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000425999	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000425999	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000425999	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000425404	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000425404	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000425404	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000425404	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000427938	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000427938	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000427938	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000427938	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000450532	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000450532	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000450532	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000450532	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000422493	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000422493	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000422493	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000422493	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-3CDS	ENST00000440216	ENST00000316292		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000440216	ENST00000491404		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000440216	ENST00000309268		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
intron-intron	ENST00000440216	ENST00000331523		ChiTaRS3.1			BC013012	HCG25	chr6	4450342	-	EEF1A1	chr6	74228311	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AJ131467	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AJ131467	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AJ131467	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AJ131467	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000377795	ENST00000307790		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000377795	ENST00000397771		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000377795	ENST00000542393		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-intron	ENST00000377795	ENST00000478812		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000353334	ENST00000307790		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000353334	ENST00000397771		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000353334	ENST00000542393		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-intron	ENST00000353334	ENST00000478812		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
Frame-shit	ENST00000524315	ENST00000307790		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
Frame-shit	ENST00000524315	ENST00000397771		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
Frame-shit	ENST00000524315	ENST00000542393		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
5CDS-intron	ENST00000524315	ENST00000478812		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000009530	ENST00000307790		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000009530	ENST00000397771		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-3CDS	ENST00000009530	ENST00000542393		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
intron-intron	ENST00000009530	ENST00000478812		ChiTaRS3.1			BP394862	CD74	chr5	149781430	-	ASCC2	chr22	30185156	-
3UTR-3UTR	ENST00000394620	ENST00000256496		ChiTaRS3.1			AI493177	CCL8	chr17	32648295	-	ARL8B	chr3	5221315	-
3UTR-3UTR	ENST00000394620	ENST00000419534		ChiTaRS3.1			AI493177	CCL8	chr17	32648295	-	ARL8B	chr3	5221315	-
3UTR-intron	ENST00000394620	ENST00000468010		ChiTaRS3.1			AI493177	CCL8	chr17	32648295	-	ARL8B	chr3	5221315	-
intron-3CDS	ENST00000396651	ENST00000339865		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-5UTR	ENST00000396651	ENST00000539466		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-5UTR	ENST00000396651	ENST00000527733		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-5UTR	ENST00000396651	ENST00000399455		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-intron	ENST00000396651	ENST00000305481		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-3CDS	ENST00000372209	ENST00000339865		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-5UTR	ENST00000372209	ENST00000539466		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-5UTR	ENST00000372209	ENST00000527733		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-5UTR	ENST00000372209	ENST00000399455		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
intron-intron	ENST00000372209	ENST00000305481		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
3UTR-3CDS	ENST00000485390	ENST00000339865		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
3UTR-5UTR	ENST00000485390	ENST00000539466		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
3UTR-5UTR	ENST00000485390	ENST00000527733		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
3UTR-5UTR	ENST00000485390	ENST00000399455		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
3UTR-intron	ENST00000485390	ENST00000305481		ChiTaRS3.1			BG565964	RPS8	chr1	45241605	+	USP47	chr11	11970041	+
5CDS-5UTR	ENST00000229239	ENST00000359943		ChiTaRS3.1			DA778207	GAPDH	chr12	6644020	+	FAM3C	chr7	121023065	-
5UTR-5UTR	ENST00000396856	ENST00000359943		ChiTaRS3.1			DA778207	GAPDH	chr12	6644020	+	FAM3C	chr7	121023065	-
5CDS-5UTR	ENST00000396861	ENST00000359943		ChiTaRS3.1			DA778207	GAPDH	chr12	6644020	+	FAM3C	chr7	121023065	-
5CDS-5UTR	ENST00000396859	ENST00000359943		ChiTaRS3.1			DA778207	GAPDH	chr12	6644020	+	FAM3C	chr7	121023065	-
intron-5UTR	ENST00000396858	ENST00000359943		ChiTaRS3.1			DA778207	GAPDH	chr12	6644020	+	FAM3C	chr7	121023065	-
3UTR-3CDS	ENST00000376030	ENST00000322507		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
3UTR-3CDS	ENST00000376030	ENST00000345356		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
3UTR-3CDS	ENST00000376030	ENST00000416123		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
3UTR-3CDS	ENST00000376030	ENST00000483888		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
3UTR-intron	ENST00000376030	ENST00000511023		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000503743	ENST00000322507		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000503743	ENST00000345356		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000503743	ENST00000416123		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000503743	ENST00000483888		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-intron	ENST00000503743	ENST00000511023		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000422387	ENST00000322507		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000422387	ENST00000345356		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000422387	ENST00000416123		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000422387	ENST00000483888		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-intron	ENST00000422387	ENST00000511023		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000361144	ENST00000322507		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000361144	ENST00000345356		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000361144	ENST00000416123		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000361144	ENST00000483888		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-intron	ENST00000361144	ENST00000511023		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400798	ENST00000322507		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400798	ENST00000345356		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400798	ENST00000416123		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400798	ENST00000483888		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-intron	ENST00000400798	ENST00000511023		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400797	ENST00000322507		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400797	ENST00000345356		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400797	ENST00000416123		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-3CDS	ENST00000400797	ENST00000483888		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
intron-intron	ENST00000400797	ENST00000511023		ChiTaRS3.1			BF108734	KAZN	chr1	15444068	-	COL12A1	chr6	75829120	+
3UTR-3UTR	ENST00000299575	ENST00000409514		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-3UTR	ENST00000299575	ENST00000409098		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000299575	ENST00000409394		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000299575	ENST00000258416		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000299575	ENST00000409495		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000299575	ENST00000409167		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000299575	ENST00000409322		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000299575	ENST00000479834		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-3UTR	ENST00000539819	ENST00000409514		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-3UTR	ENST00000539819	ENST00000409098		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-intron	ENST00000539819	ENST00000409394		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-intron	ENST00000539819	ENST00000258416		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-intron	ENST00000539819	ENST00000409495		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-intron	ENST00000539819	ENST00000409167		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-intron	ENST00000539819	ENST00000409322		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
intron-intron	ENST00000539819	ENST00000479834		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-3UTR	ENST00000564241	ENST00000409514		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-3UTR	ENST00000564241	ENST00000409098		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000564241	ENST00000409394		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000564241	ENST00000258416		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000564241	ENST00000409495		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000564241	ENST00000409167		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000564241	ENST00000409322		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000564241	ENST00000479834		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-3UTR	ENST00000566488	ENST00000409514		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-3UTR	ENST00000566488	ENST00000409098		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000566488	ENST00000409394		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000566488	ENST00000258416		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000566488	ENST00000409495		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000566488	ENST00000409167		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000566488	ENST00000409322		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
3UTR-intron	ENST00000566488	ENST00000479834		ChiTaRS3.1			AI004991	ATMIN	chr16	81080140	+	EIF4E2	chr2	233448154	+
5CDS-intron	ENST00000229239	ENST00000540235		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393930		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393931		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000310706		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000540235		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393930		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393931		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000310706		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000540235		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393930		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393931		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000310706		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000540235		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393930		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393931		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000310706		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000540235		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393930		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393931		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000310706		ChiTaRS3.1			BQ314755	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
Frame-shit	ENST00000330579	ENST00000600603		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
Frame-shit	ENST00000330579	ENST00000601638		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
Frame-shit	ENST00000330579	ENST00000221557		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000330579	ENST00000598325		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000330579	ENST00000391842		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000330579	ENST00000599732		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000330579	ENST00000601675		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3CDS	ENST00000535343	ENST00000600603		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3CDS	ENST00000535343	ENST00000601638		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3CDS	ENST00000535343	ENST00000221557		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3UTR	ENST00000535343	ENST00000598325		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3UTR	ENST00000535343	ENST00000391842		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3UTR	ENST00000535343	ENST00000599732		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
3UTR-3UTR	ENST00000535343	ENST00000601675		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
Frame-shit	ENST00000538784	ENST00000600603		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
Frame-shit	ENST00000538784	ENST00000601638		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
Frame-shit	ENST00000538784	ENST00000221557		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000538784	ENST00000598325		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000538784	ENST00000391842		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000538784	ENST00000599732		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5CDS-3UTR	ENST00000538784	ENST00000601675		ChiTaRS3.1			CA428021	NOC4L	chr12	132636143	-	PTOV1	chr19	50363375	-
5UTR-3CDS	ENST00000263125	ENST00000377921		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-3CDS	ENST00000263125	ENST00000345264		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-5UTR	ENST00000263125	ENST00000602389		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-intron	ENST00000263125	ENST00000464074		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-3CDS	ENST00000397176	ENST00000377921		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-3CDS	ENST00000397176	ENST00000345264		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-5UTR	ENST00000397176	ENST00000602389		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-intron	ENST00000397176	ENST00000464074		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-3CDS	ENST00000539722	ENST00000377921		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-3CDS	ENST00000539722	ENST00000345264		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-5UTR	ENST00000539722	ENST00000602389		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5UTR-intron	ENST00000539722	ENST00000464074		ChiTaRS3.1			DA408247	PRKCQ	chr10	6622173	-	RSU1	chr10	16824085	-
5CDS-3UTR	ENST00000340149	ENST00000538401		ChiTaRS3.1			BC008822	GAB2	chr11	77934457	-	GAL	chr11	68452032	+
5CDS-5UTR	ENST00000340149	ENST00000265643		ChiTaRS3.1			BC008822	GAB2	chr11	77934457	-	GAL	chr11	68452032	+
5CDS-3UTR	ENST00000361507	ENST00000538401		ChiTaRS3.1			BC008822	GAB2	chr11	77934457	-	GAL	chr11	68452032	+
5CDS-5UTR	ENST00000361507	ENST00000265643		ChiTaRS3.1			BC008822	GAB2	chr11	77934457	-	GAL	chr11	68452032	+
intron-3UTR	ENST00000526030	ENST00000538401		ChiTaRS3.1			BC008822	GAB2	chr11	77934457	-	GAL	chr11	68452032	+
intron-5UTR	ENST00000526030	ENST00000265643		ChiTaRS3.1			BC008822	GAB2	chr11	77934457	-	GAL	chr11	68452032	+
5CDS-intron	ENST00000300184	ENST00000447110		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000300184	ENST00000581552		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000300184	ENST00000584803		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000300184	ENST00000583222		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000358246	ENST00000447110		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000358246	ENST00000581552		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000358246	ENST00000584803		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000358246	ENST00000583222		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
intron-intron	ENST00000530234	ENST00000447110		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
intron-intron	ENST00000530234	ENST00000581552		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
intron-intron	ENST00000530234	ENST00000584803		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
intron-intron	ENST00000530234	ENST00000583222		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000534016	ENST00000447110		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000534016	ENST00000581552		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000534016	ENST00000584803		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
5CDS-intron	ENST00000534016	ENST00000583222		ChiTaRS3.1			BM549901	MS4A7	chr11	60157054	+	PIK3R5	chr17	8818534	-
In-frame	ENST00000446906	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000446906	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000446906	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000446906	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000446906	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
5CDS-intron	ENST00000446906	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377072	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377072	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377072	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377072	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377072	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
5CDS-intron	ENST00000377072	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000307729	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000307729	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000307729	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000307729	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000307729	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
5CDS-intron	ENST00000307729	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377059	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377059	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377059	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377059	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377059	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
5CDS-intron	ENST00000377059	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
3UTR-3CDS	ENST00000495130	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
3UTR-3CDS	ENST00000495130	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
3UTR-3CDS	ENST00000495130	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
3UTR-3CDS	ENST00000495130	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
3UTR-3CDS	ENST00000495130	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
3UTR-intron	ENST00000495130	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377100	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377100	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377100	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377100	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377100	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
5CDS-intron	ENST00000377100	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377091	ENST00000532317		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377091	ENST00000526033		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377091	ENST00000393346		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
Frame-shit	ENST00000377091	ENST00000528398		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
In-frame	ENST00000377091	ENST00000356360		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
5CDS-intron	ENST00000377091	ENST00000528411		ChiTaRS3.1			AF060927	MLLT10	chr10	21827841	+	PICALM	chr11	85670104	-
intron-intron	ENST00000243878	ENST00000408881		ChiTaRS3.1			AW274651	ENKD1	chr16	67697192	+	MIR1256	chr10	74127388	+
intron-intron	ENST00000602644	ENST00000408881		ChiTaRS3.1			AW274651	ENKD1	chr16	67697192	+	MIR1256	chr10	74127388	+
intron-intron	ENST00000602409	ENST00000408881		ChiTaRS3.1			AW274651	ENKD1	chr16	67697192	+	MIR1256	chr10	74127388	+
Frame-shit	ENST00000325636	ENST00000398722		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000536736		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000441551		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000300591		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000398705		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000579038		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000441893		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000582408		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
Frame-shit	ENST00000325636	ENST00000398686		ChiTaRS3.1			BI559911	C11orf71	chr11	114270710	-	LOXHD1	chr18	44069107	-
5CDS-3UTR	ENST00000248553	ENST00000344041		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
5CDS-intron	ENST00000248553	ENST00000475788		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
5CDS-intron	ENST00000248553	ENST00000405243		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
5CDS-3UTR	ENST00000248553	ENST00000401957		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
intron-3UTR	ENST00000429938	ENST00000344041		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
intron-intron	ENST00000429938	ENST00000475788		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
intron-intron	ENST00000429938	ENST00000405243		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
intron-3UTR	ENST00000429938	ENST00000401957		ChiTaRS3.1			DA283619	HSPB1	chr7	75932104	+	RAPGEF5	chr7	22159963	-
intron-3UTR	ENST00000609104	ENST00000375859		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000609104	ENST00000541629		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000609104	ENST00000469017		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-3UTR	ENST00000277575	ENST00000375859		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000277575	ENST00000541629		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000277575	ENST00000469017		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-3UTR	ENST00000379237	ENST00000375859		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000379237	ENST00000541629		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000379237	ENST00000469017		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-3UTR	ENST00000443016	ENST00000375859		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000443016	ENST00000541629		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000443016	ENST00000469017		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-3UTR	ENST00000609853	ENST00000375859		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000609853	ENST00000541629		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
intron-intron	ENST00000609853	ENST00000469017		ChiTaRS3.1			BE702115	USP6NL	chr10	11606478	-	SPIN1	chr9	91092902	+
3UTR-3CDS	ENST00000361042	ENST00000377191		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
3UTR-3CDS	ENST00000361042	ENST00000430571		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
3UTR-3CDS	ENST00000361042	ENST00000539513		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
3UTR-3CDS	ENST00000335327	ENST00000377191		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
3UTR-3CDS	ENST00000335327	ENST00000430571		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
3UTR-3CDS	ENST00000335327	ENST00000539513		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
intron-3CDS	ENST00000496788	ENST00000377191		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
intron-3CDS	ENST00000496788	ENST00000430571		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
intron-3CDS	ENST00000496788	ENST00000539513		ChiTaRS3.1			BQ683058	WASF3	chr13	27261841	+	XRN2	chr20	21346298	+
intron-intron	ENST00000524115	ENST00000426256		ChiTaRS3.1			W93236	NKX6-3	chr8	41512550	-	RNF185	chr22	31602832	+
intron-3UTR	ENST00000524115	ENST00000326132		ChiTaRS3.1			W93236	NKX6-3	chr8	41512550	-	RNF185	chr22	31602832	+
intron-3UTR	ENST00000524115	ENST00000266252		ChiTaRS3.1			W93236	NKX6-3	chr8	41512550	-	RNF185	chr22	31602832	+
3UTR-intron	ENST00000558401	ENST00000370073		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370071		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370074		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370070		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370061		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370072		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000542803		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370068		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370067		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370065		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000370066		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
3UTR-intron	ENST00000558401	ENST00000477948		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370073		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370071		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370074		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370070		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370061		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370072		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000542803		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370068		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370067		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370065		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000370066		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000559916	ENST00000477948		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370073		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370071		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370074		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370070		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370061		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370072		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000542803		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370068		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370067		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370065		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000370066		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-intron	ENST00000544417	ENST00000477948		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370073		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370071		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370074		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370070		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370061		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370072		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000542803		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370068		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370067		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370065		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000370066		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
5CDS-intron	ENST00000559220	ENST00000477948		ChiTaRS3.1			BM783943	B2M	chr15	45010343	+	NTNG1	chr1	108014986	+
intron-3CDS	ENST00000390548	ENST00000543376		ChiTaRS3.1			BF878903	IGHG1	chr14	106235792	-	GOLGA8A	chr15	34674245	-
intron-3CDS	ENST00000390548	ENST00000432566		ChiTaRS3.1			BF878903	IGHG1	chr14	106235792	-	GOLGA8A	chr15	34674245	-
intron-3CDS	ENST00000390548	ENST00000360553		ChiTaRS3.1			BF878903	IGHG1	chr14	106235792	-	GOLGA8A	chr15	34674245	-
intron-3CDS	ENST00000390548	ENST00000359187		ChiTaRS3.1			BF878903	IGHG1	chr14	106235792	-	GOLGA8A	chr15	34674245	-
intron-intron	ENST00000390548	ENST00000565885		ChiTaRS3.1			BF878903	IGHG1	chr14	106235792	-	GOLGA8A	chr15	34674245	-
intron-3CDS	ENST00000302979	ENST00000320585		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000302979	ENST00000529987		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000302979	ENST00000457199		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000302979	ENST00000529726		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000302979	ENST00000530765		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-3CDS	ENST00000399697	ENST00000320585		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000399697	ENST00000529987		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000399697	ENST00000457199		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000399697	ENST00000529726		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000399697	ENST00000530765		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-3CDS	ENST00000465887	ENST00000320585		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000465887	ENST00000529987		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000465887	ENST00000457199		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000465887	ENST00000529726		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
3UTR-intron	ENST00000465887	ENST00000530765		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-3CDS	ENST00000399696	ENST00000320585		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000399696	ENST00000529987		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000399696	ENST00000457199		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000399696	ENST00000529726		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-intron	ENST00000399696	ENST00000530765		ChiTaRS3.1			BM544526	POLR1D	chr13	28240850	+	CHORDC1	chr11	89947307	-
intron-3UTR	ENST00000532456	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
intron-intron	ENST00000532456	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-3UTR	ENST00000539648	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-intron	ENST00000539648	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-3UTR	ENST00000528499	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-intron	ENST00000528499	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-3UTR	ENST00000263574	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-intron	ENST00000263574	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
intron-3UTR	ENST00000345598	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
intron-intron	ENST00000345598	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-3UTR	ENST00000338167	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-intron	ENST00000338167	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-3UTR	ENST00000278756	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-intron	ENST00000278756	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-3UTR	ENST00000543137	ENST00000300605		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
5CDS-intron	ENST00000543137	ENST00000587841		ChiTaRS3.1			BP316568	APLP2	chr11	129992298	+	HDHD2	chr18	44634700	-
intron-5UTR	ENST00000322147	ENST00000315717		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000322147	ENST00000295685		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000322147	ENST00000477992		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-5UTR	ENST00000301873	ENST00000315717		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000301873	ENST00000295685		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000301873	ENST00000477992		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-5UTR	ENST00000530785	ENST00000315717		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000530785	ENST00000295685		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000530785	ENST00000477992		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-5UTR	ENST00000529189	ENST00000315717		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000529189	ENST00000295685		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000529189	ENST00000477992		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-5UTR	ENST00000532932	ENST00000315717		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000532932	ENST00000295685		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000532932	ENST00000477992		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-5UTR	ENST00000536982	ENST00000315717		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000536982	ENST00000295685		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-intron	ENST00000536982	ENST00000477992		ChiTaRS3.1			BP338065	LTBP3	chr11	65307224	-	ARPC2	chr2	219081912	+
intron-3CDS	ENST00000263102	ENST00000355710		ChiTaRS3.1			AF395885	CCDC6	chr10	61665030	-	RET	chr10	43610127	+
intron-3CDS	ENST00000263102	ENST00000340058		ChiTaRS3.1			AF395885	CCDC6	chr10	61665030	-	RET	chr10	43610127	+
intron-3CDS	ENST00000409119	ENST00000374642		ChiTaRS3.1			AI739187	TNFRSF14	chr1	2495102	-	C1QA	chr1	22965505	-
intron-3CDS	ENST00000409119	ENST00000402322		ChiTaRS3.1			AI739187	TNFRSF14	chr1	2495102	-	C1QA	chr1	22965505	-
3UTR-3CDS	ENST00000355716	ENST00000374642		ChiTaRS3.1			AI739187	TNFRSF14	chr1	2495102	-	C1QA	chr1	22965505	-
3UTR-3CDS	ENST00000355716	ENST00000402322		ChiTaRS3.1			AI739187	TNFRSF14	chr1	2495102	-	C1QA	chr1	22965505	-
intron-3CDS	ENST00000442392	ENST00000374642		ChiTaRS3.1			AI739187	TNFRSF14	chr1	2495102	-	C1QA	chr1	22965505	-
intron-3CDS	ENST00000442392	ENST00000402322		ChiTaRS3.1			AI739187	TNFRSF14	chr1	2495102	-	C1QA	chr1	22965505	-
3UTR-intron	ENST00000556994	ENST00000320954		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000556994	ENST00000449224		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000556994	ENST00000485310		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000546080	ENST00000320954		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000546080	ENST00000449224		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000546080	ENST00000485310		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000216774	ENST00000320954		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000216774	ENST00000449224		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000216774	ENST00000485310		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000555557	ENST00000320954		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000555557	ENST00000449224		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
3UTR-intron	ENST00000555557	ENST00000485310		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
intron-intron	ENST00000555535	ENST00000320954		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
intron-intron	ENST00000555535	ENST00000449224		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
intron-intron	ENST00000555535	ENST00000485310		ChiTaRS3.1			AI608636	SRP54	chr14	35498542	-	CRTAP	chr3	33175754	-
intron-3CDS	ENST00000540753	ENST00000307142		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-intron	ENST00000540753	ENST00000448416		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-intron	ENST00000540753	ENST00000429713		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-intron	ENST00000540753	ENST00000434046		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-3CDS	ENST00000223423	ENST00000307142		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-intron	ENST00000223423	ENST00000448416		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-intron	ENST00000223423	ENST00000429713		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-intron	ENST00000223423	ENST00000434046		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-3CDS	ENST00000362012	ENST00000307142		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-intron	ENST00000362012	ENST00000448416		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-intron	ENST00000362012	ENST00000429713		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
3UTR-intron	ENST00000362012	ENST00000434046		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-3CDS	ENST00000373698	ENST00000307142		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-intron	ENST00000373698	ENST00000448416		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-intron	ENST00000373698	ENST00000429713		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
intron-intron	ENST00000373698	ENST00000434046		ChiTaRS3.1			AI972452	PTGS1	chr9	125155415	-	SYNPO2	chr4	119952493	-
Frame-shit	ENST00000313735	ENST00000358746		ChiTaRS3.1			AK310926	NOS2	chr17	26097938	-	TTC37	chr5	94830723	-
5CDS-intron	ENST00000313735	ENST00000515176		ChiTaRS3.1			AK310926	NOS2	chr17	26097938	-	TTC37	chr5	94830723	-
In-frame	ENST00000229239	ENST00000394332		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000229239	ENST00000394333		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000229239	ENST00000479035		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-intron	ENST00000229239	ENST00000245857		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000229239	ENST00000577407		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
In-frame	ENST00000396856	ENST00000394332		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396856	ENST00000394333		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396856	ENST00000479035		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-intron	ENST00000396856	ENST00000245857		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396856	ENST00000577407		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
In-frame	ENST00000396861	ENST00000394332		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396861	ENST00000394333		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396861	ENST00000479035		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-intron	ENST00000396861	ENST00000245857		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396861	ENST00000577407		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
In-frame	ENST00000396859	ENST00000394332		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396859	ENST00000394333		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396859	ENST00000479035		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-intron	ENST00000396859	ENST00000245857		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396859	ENST00000577407		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
In-frame	ENST00000396858	ENST00000394332		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396858	ENST00000394333		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396858	ENST00000479035		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-intron	ENST00000396858	ENST00000245857		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
5CDS-5UTR	ENST00000396858	ENST00000577407		ChiTaRS3.1			DW440511	GAPDH	chr12	6646535	+	RPL23	chr17	37009979	-
intron-3UTR	ENST00000455833	ENST00000355264		ChiTaRS3.1			BM674632	IFFO2	chr1	19230956	+	AP3M1	chr10	75883115	+
intron-3UTR	ENST00000455833	ENST00000372745		ChiTaRS3.1			BM674632	IFFO2	chr1	19230956	+	AP3M1	chr10	75883115	+
intron-intron	ENST00000455833	ENST00000487653		ChiTaRS3.1			BM674632	IFFO2	chr1	19230956	+	AP3M1	chr10	75883115	+
intron-3CDS	ENST00000343380	ENST00000381346		ChiTaRS3.1			BQ962146	E2F1	chr20	32274048	-	RDH11	chr14	68159775	-
intron-3CDS	ENST00000343380	ENST00000553384		ChiTaRS3.1			BQ962146	E2F1	chr20	32274048	-	RDH11	chr14	68159775	-
intron-3CDS	ENST00000343380	ENST00000428130		ChiTaRS3.1			BQ962146	E2F1	chr20	32274048	-	RDH11	chr14	68159775	-
intron-3UTR	ENST00000407625	ENST00000233143		ChiTaRS3.1			CA338042	FAM228B	chr2	24300348	-	TMSB10	chr2	85133702	+
intron-3UTR	ENST00000420135	ENST00000233143		ChiTaRS3.1			CA338042	FAM228B	chr2	24300348	-	TMSB10	chr2	85133702	+
intron-3UTR	ENST00000461972	ENST00000233143		ChiTaRS3.1			CA338042	FAM228B	chr2	24300348	-	TMSB10	chr2	85133702	+
intron-5UTR	ENST00000394440	ENST00000264595		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-intron	ENST00000394440	ENST00000506853		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-5UTR	ENST00000461540	ENST00000264595		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-intron	ENST00000461540	ENST00000506853		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-5UTR	ENST00000544079	ENST00000264595		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-intron	ENST00000544079	ENST00000506853		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-5UTR	ENST00000544185	ENST00000264595		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-intron	ENST00000544185	ENST00000506853		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-5UTR	ENST00000538252	ENST00000264595		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-intron	ENST00000538252	ENST00000506853		ChiTaRS3.1			X55330	CCT4	chr2	62095580	-	AGA	chr4	178363591	-
intron-5UTR	ENST00000222002	ENST00000367698		ChiTaRS3.1			AI110855	SULT2A1	chr19	48374086	-	SERPINC1	chr1	173886473	-
intron-intron	ENST00000222002	ENST00000494024		ChiTaRS3.1			AI110855	SULT2A1	chr19	48374086	-	SERPINC1	chr1	173886473	-
intron-3CDS	ENST00000355312	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000355312	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000355312	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000356259	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000356259	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000356259	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000338373	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000338373	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000338373	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000360185	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000360185	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000360185	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000343646	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000343646	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000343646	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000354574	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000354574	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000354574	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000457474	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000457474	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000457474	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000361006	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000361006	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000361006	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000553118	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000553118	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000553118	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000551209	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000551209	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000551209	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000548655	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000548655	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000548655	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000547815	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000547815	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000547815	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000320063	ENST00000316084		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000320063	ENST00000486733		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-5UTR	ENST00000320063	ENST00000373626		ChiTaRS3.1			AA075606	GIT2	chr12	110423455	-	RPS4X	chrX	71495428	-
intron-3CDS	ENST00000330597	ENST00000372921		ChiTaRS3.1			BG527983	HBG1	chr11	5270750	-	ANXA7	chr10	75139689	-
intron-3CDS	ENST00000330597	ENST00000535178		ChiTaRS3.1			BG527983	HBG1	chr11	5270750	-	ANXA7	chr10	75139689	-
intron-intron	ENST00000330597	ENST00000492380		ChiTaRS3.1			BG527983	HBG1	chr11	5270750	-	ANXA7	chr10	75139689	-
Frame-shit	ENST00000379996	ENST00000397821		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379996	ENST00000379716		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379996	ENST00000379698		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379996	ENST00000541422		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379996	ENST00000379697		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379996	ENST00000477102		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
Frame-shit	ENST00000379989	ENST00000397821		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379989	ENST00000379716		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379989	ENST00000379698		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379989	ENST00000541422		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379989	ENST00000379697		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
5CDS-intron	ENST00000379989	ENST00000477102		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-3CDS	ENST00000463994	ENST00000397821		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-intron	ENST00000463994	ENST00000379716		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-intron	ENST00000463994	ENST00000379698		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-intron	ENST00000463994	ENST00000541422		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-intron	ENST00000463994	ENST00000379697		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-intron	ENST00000463994	ENST00000477102		ChiTaRS3.1			DA672235	CDKL5	chrX	18528975	+	SH3KBP1	chrX	19702148	-
intron-3CDS	ENST00000376840	ENST00000303635		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-3CDS	ENST00000376840	ENST00000439411		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000376840	ENST00000476163		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000376840	ENST00000557126		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000376840	ENST00000473578		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000376840	ENST00000467404		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000376840	ENST00000476864		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-3CDS	ENST00000409318	ENST00000303635		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-3CDS	ENST00000409318	ENST00000439411		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000409318	ENST00000476163		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000409318	ENST00000557126		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000409318	ENST00000473578		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000409318	ENST00000467404		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000409318	ENST00000476864		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-3CDS	ENST00000462819	ENST00000303635		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-3CDS	ENST00000462819	ENST00000439411		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000462819	ENST00000476163		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000462819	ENST00000557126		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000462819	ENST00000473578		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000462819	ENST00000467404		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
intron-intron	ENST00000462819	ENST00000476864		ChiTaRS3.1			H96278	TBC1D8	chr2	101654066	-	CAMTA1	chr1	6880239	+
In-frame	ENST00000368802	ENST00000341695		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000348706		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000432483		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000354147		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000380004		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000357415		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000368802	ENST00000509426		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000368802	ENST00000310267		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000341695		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000348706		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000432483		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000354147		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000380004		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000357415		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000368805	ENST00000509426		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000368805	ENST00000310267		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000341695		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000348706		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000432483		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000354147		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000380004		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000357415		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000435970	ENST00000509426		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000435970	ENST00000310267		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000341695		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000348706		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000432483		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000354147		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000380004		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000357415		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000358835	ENST00000509426		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000358835	ENST00000310267		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000341695		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000348706		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000432483		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000354147		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000380004		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000357415		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-5UTR	ENST00000462119	ENST00000509426		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-intron	ENST00000462119	ENST00000310267		ChiTaRS3.1			DB572905	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000548241	ENST00000391857		ChiTaRS3.1			AX747058	ANKRD52	chr12	56636333	-	RPL13A	chr19	49993801	+
intron-3UTR	ENST00000548241	ENST00000477613		ChiTaRS3.1			AX747058	ANKRD52	chr12	56636333	-	RPL13A	chr19	49993801	+
intron-3CDS	ENST00000267116	ENST00000391857		ChiTaRS3.1			AX747058	ANKRD52	chr12	56636333	-	RPL13A	chr19	49993801	+
intron-3UTR	ENST00000267116	ENST00000477613		ChiTaRS3.1			AX747058	ANKRD52	chr12	56636333	-	RPL13A	chr19	49993801	+
intron-intron	ENST00000574590	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000574590	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000574590	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000574590	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-intron	ENST00000575318	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000575318	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000575318	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000575318	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-intron	ENST00000572904	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000572904	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000572904	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000572904	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-intron	ENST00000262419	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000262419	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000262419	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000262419	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-intron	ENST00000432791	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000432791	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000432791	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000432791	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-intron	ENST00000393476	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000393476	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000393476	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000393476	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-intron	ENST00000576248	ENST00000553400		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000576248	ENST00000330836		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000576248	ENST00000544005		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
intron-5UTR	ENST00000576248	ENST00000555054		ChiTaRS3.1			DA388427	KANSL1	chr17	44219459	-	DDX24	chr14	94547550	-
In-frame	ENST00000296802	ENST00000296802		ChiTaRS3.1			BF434324	NSA2	chr5	74066469	-	NSA2	chr5	74066493	+
5CDS-3UTR	ENST00000296802	ENST00000513356		ChiTaRS3.1			BF434324	NSA2	chr5	74066469	-	NSA2	chr5	74066493	+
3UTR-3CDS	ENST00000513356	ENST00000296802		ChiTaRS3.1			BF434324	NSA2	chr5	74066469	-	NSA2	chr5	74066493	+
3UTR-3UTR	ENST00000513356	ENST00000513356		ChiTaRS3.1			BF434324	NSA2	chr5	74066469	-	NSA2	chr5	74066493	+
5CDS-3UTR	ENST00000442092	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000442092	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000442092	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-3UTR	ENST00000266022	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000266022	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000266022	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-3UTR	ENST00000443081	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000443081	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000443081	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-3UTR	ENST00000539992	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000539992	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000539992	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
3UTR-3UTR	ENST00000441115	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
3UTR-intron	ENST00000441115	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
3UTR-intron	ENST00000441115	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-3UTR	ENST00000422955	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000422955	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
5CDS-intron	ENST00000422955	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
intron-3UTR	ENST00000421682	ENST00000265734		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
intron-intron	ENST00000421682	ENST00000424848		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
intron-intron	ENST00000421682	ENST00000491250		ChiTaRS3.1			BQ014067	RBM6	chr3	50103761	-	CDK6	chr7	92235094	+
intron-intron	ENST00000372890	ENST00000434618		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000475304		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000489157		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000426633		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000456592		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000467834		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000374568		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000374572		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000395114		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000550330		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000552779		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000480059		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000437315		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000417059		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000456807		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000549949		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000553235		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-5UTR	ENST00000372890	ENST00000495024		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000372890	ENST00000383067		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000372890	ENST00000383066		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000372890	ENST00000551943		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000383065		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000546700		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000550794		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000461837		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000412144		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000383198		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000548408		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000383197		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000550915		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000372890	ENST00000549142		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000434618		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000475304		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000489157		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000426633		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000456592		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000467834		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000374568		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000374572		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000395114		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000550330		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000552779		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000480059		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000437315		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000417059		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000456807		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000549949		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000553235		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-5UTR	ENST00000546104	ENST00000495024		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000546104	ENST00000383067		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000546104	ENST00000383066		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000546104	ENST00000551943		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000383065		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000546700		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000550794		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000461837		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000412144		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000383198		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000548408		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000383197		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000550915		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000546104	ENST00000549142		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000434618		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000475304		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000489157		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000426633		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000456592		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000467834		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000374568		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000374572		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000395114		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000550330		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000552779		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000480059		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000437315		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000417059		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000456807		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000549949		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000553235		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-5UTR	ENST00000460320	ENST00000495024		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000460320	ENST00000383067		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000460320	ENST00000383066		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-3UTR	ENST00000460320	ENST00000551943		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000383065		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000546700		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000550794		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000461837		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000412144		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000383198		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000548408		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000383197		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000550915		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
intron-intron	ENST00000460320	ENST00000549142		ChiTaRS3.1			BU623091	TRUB2	chr9	131071574	+	TAPBP	chr6	4742993	+
Frame-shit	ENST00000356805	ENST00000316084		ChiTaRS3.1			BQ325055	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-5UTR	ENST00000356805	ENST00000486733		ChiTaRS3.1			BQ325055	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-intron	ENST00000356805	ENST00000373626		ChiTaRS3.1			BQ325055	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
Frame-shit	ENST00000333896	ENST00000316084		ChiTaRS3.1			BQ325055	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-5UTR	ENST00000333896	ENST00000486733		ChiTaRS3.1			BQ325055	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
5CDS-intron	ENST00000333896	ENST00000373626		ChiTaRS3.1			BQ325055	SPTBN1	chr2	54885078	+	RPS4X	chrX	71493180	-
3UTR-intron	ENST00000380050	ENST00000536774		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000380050	ENST00000327441		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000380050	ENST00000539062		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000380050	ENST00000556451		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000380050	ENST00000396294		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000380050	ENST00000545536		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000380050	ENST00000537471		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000380050	ENST00000539174		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000265741	ENST00000536774		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000265741	ENST00000327441		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000265741	ENST00000539062		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000265741	ENST00000556451		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000265741	ENST00000396294		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000265741	ENST00000545536		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000265741	ENST00000537471		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000265741	ENST00000539174		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000406263	ENST00000536774		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000406263	ENST00000327441		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000406263	ENST00000539062		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000406263	ENST00000556451		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000406263	ENST00000396294		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000406263	ENST00000545536		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000406263	ENST00000537471		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000406263	ENST00000539174		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000436577	ENST00000536774		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000436577	ENST00000327441		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000436577	ENST00000539062		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000436577	ENST00000556451		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000436577	ENST00000396294		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000436577	ENST00000545536		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-5UTR	ENST00000436577	ENST00000537471		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
3UTR-intron	ENST00000436577	ENST00000539174		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-intron	ENST00000496279	ENST00000536774		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-intron	ENST00000496279	ENST00000327441		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-intron	ENST00000496279	ENST00000539062		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-5UTR	ENST00000496279	ENST00000556451		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-5UTR	ENST00000496279	ENST00000396294		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-5UTR	ENST00000496279	ENST00000545536		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-5UTR	ENST00000496279	ENST00000537471		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
intron-intron	ENST00000496279	ENST00000539174		ChiTaRS3.1			BU561606	CDK14	chr7	90836613	+	MIPOL1	chr14	37688874	+
In-frame	ENST00000358127	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000358127	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000358127	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000358127	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-3CDS	ENST00000523241	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-5UTR	ENST00000523241	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-5UTR	ENST00000523241	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-5UTR	ENST00000523241	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-3CDS	ENST00000520154	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-5UTR	ENST00000520154	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-5UTR	ENST00000520154	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
intron-5UTR	ENST00000520154	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
In-frame	ENST00000377852	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377852	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377852	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377852	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
In-frame	ENST00000377853	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377853	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377853	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377853	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
Frame-shit	ENST00000522003	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000522003	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000522003	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000522003	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
In-frame	ENST00000520281	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000520281	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000520281	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000520281	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
In-frame	ENST00000414447	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000414447	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000414447	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000414447	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
Frame-shit	ENST00000523145	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000523145	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000523145	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000523145	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
In-frame	ENST00000446742	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000446742	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000446742	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000446742	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
In-frame	ENST00000377847	ENST00000361524		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377847	ENST00000584787		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377847	ENST00000538137		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5CDS-5UTR	ENST00000377847	ENST00000579111		ChiTaRS3.1			DQ845345	PAX5	chr9	36923352	-	ZNF521	chr18	22807664	-
5UTR-3CDS	ENST00000367800	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000367800	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000367800	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000367800	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000367800	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000367800	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000457866	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000457866	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000457866	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000457866	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000457866	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000457866	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000417892	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000417892	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000417892	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000417892	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000417892	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000417892	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000327035	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000327035	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000327035	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000327035	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000327035	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000327035	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000488690	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000488690	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000488690	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000488690	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000488690	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000488690	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000367798	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000367798	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000367798	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000367798	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000367798	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000367798	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000528103	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000528103	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000528103	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000528103	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000528103	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000528103	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000534469	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-3CDS	ENST00000534469	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000534469	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000534469	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000534469	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
intron-intron	ENST00000534469	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000531527	ENST00000320717		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-3CDS	ENST00000531527	ENST00000338435		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000531527	ENST00000409626		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000531527	ENST00000409428		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000531527	ENST00000409215		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5UTR-intron	ENST00000531527	ENST00000471443		ChiTaRS3.1			DA400572	AHI1	chr6	135818721	-	GLS	chr2	191765290	+
5CDS-3UTR	ENST00000404234	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-3UTR	ENST00000404234	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-intron	ENST00000404234	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-3UTR	ENST00000529632	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-3UTR	ENST00000529632	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-intron	ENST00000529632	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-3UTR	ENST00000360929	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-3UTR	ENST00000360929	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-intron	ENST00000360929	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-3UTR	ENST00000248933	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-3UTR	ENST00000248933	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-intron	ENST00000248933	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-3UTR	ENST00000343706	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-3UTR	ENST00000343706	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-intron	ENST00000343706	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-3UTR	ENST00000402979	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-3UTR	ENST00000402979	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-intron	ENST00000402979	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-3UTR	ENST00000403121	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-3UTR	ENST00000403121	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5CDS-intron	ENST00000403121	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-3UTR	ENST00000411842	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-3UTR	ENST00000411842	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
3UTR-intron	ENST00000411842	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-3UTR	ENST00000494013	ENST00000309859		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-3UTR	ENST00000494013	ENST00000567468		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
intron-intron	ENST00000494013	ENST00000569182		ChiTaRS3.1			BP396134	SEZ6L	chr22	26776431	+	GGA2	chr16	23475696	-
5UTR-3CDS	ENST00000381602	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381602	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381602	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397962	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397962	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000309776	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000309776	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000509513	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000509513	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397959	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397959	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000381591	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000381591	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000403354	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000403354	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381607	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381607	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000402736	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000402736	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000602682	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000602682	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381604	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381604	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381584	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381584	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000558098	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000558098	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000545619	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000545619	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000535374	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000535374	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000344646		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374366		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374371		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000473115	ENST00000374370		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000473115	ENST00000335258		ChiTaRS3.1			BC048967	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000509990	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000509990	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000361059	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000361059	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000504203	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000504203	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000502929	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000502929	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000394800	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000394800	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-3CDS	ENST00000507197	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
intron-intron	ENST00000507197	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000394805	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000394805	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000502499	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000502499	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000510056	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000510056	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-3CDS	ENST00000503811	ENST00000304858		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5UTR-intron	ENST00000503811	ENST00000504328		ChiTaRS3.1			DC386471	MATR3	chr5	138629495	+	HSPA4	chr5	132400670	+
5CDS-3UTR	ENST00000258341	ENST00000535572		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-3UTR	ENST00000258341	ENST00000537687		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-3UTR	ENST00000258341	ENST00000315939		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-intron	ENST00000258341	ENST00000447667		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-intron	ENST00000258341	ENST00000530271		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-intron	ENST00000258341	ENST00000540360		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-3UTR	ENST00000258341	ENST00000340908		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
5CDS-intron	ENST00000258341	ENST00000574564		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-3UTR	ENST00000466964	ENST00000535572		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-3UTR	ENST00000466964	ENST00000537687		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-3UTR	ENST00000466964	ENST00000315939		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-intron	ENST00000466964	ENST00000447667		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-intron	ENST00000466964	ENST00000530271		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-intron	ENST00000466964	ENST00000540360		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-3UTR	ENST00000466964	ENST00000340908		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-intron	ENST00000466964	ENST00000574564		ChiTaRS3.1			BG000564	LAMC1	chr1	183104244	+	WNK1	chr12	1019290	+
intron-3UTR	ENST00000505044	ENST00000262811		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
intron-intron	ENST00000505044	ENST00000608648		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
3UTR-3UTR	ENST00000433351	ENST00000262811		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
3UTR-intron	ENST00000433351	ENST00000608648		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
intron-3UTR	ENST00000264441	ENST00000262811		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
intron-intron	ENST00000264441	ENST00000608648		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
intron-3UTR	ENST00000545138	ENST00000262811		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
intron-intron	ENST00000545138	ENST00000608648		ChiTaRS3.1			BQ876631	PCYOX1	chr2	70506593	+	MAST3	chr19	18261082	+
intron-3CDS	ENST00000409527	ENST00000450466		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000409527	ENST00000383233		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000409527	ENST00000542162		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-intron	ENST00000409527	ENST00000399707		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-intron	ENST00000409527	ENST00000475185		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
3UTR-3CDS	ENST00000321878	ENST00000450466		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
3UTR-3CDS	ENST00000321878	ENST00000383233		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
3UTR-3CDS	ENST00000321878	ENST00000542162		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
3UTR-intron	ENST00000321878	ENST00000399707		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
3UTR-intron	ENST00000321878	ENST00000475185		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
Frame-shit	ENST00000026218	ENST00000450466		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
Frame-shit	ENST00000026218	ENST00000383233		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
Frame-shit	ENST00000026218	ENST00000542162		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
5CDS-intron	ENST00000026218	ENST00000399707		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
5CDS-intron	ENST00000026218	ENST00000475185		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000470411	ENST00000450466		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000470411	ENST00000383233		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000470411	ENST00000542162		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-intron	ENST00000470411	ENST00000399707		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-intron	ENST00000470411	ENST00000475185		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000544860	ENST00000450466		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000544860	ENST00000383233		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-3CDS	ENST00000544860	ENST00000542162		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-intron	ENST00000544860	ENST00000399707		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
intron-intron	ENST00000544860	ENST00000475185		ChiTaRS3.1			BF090869	PIGQ	chr16	633346	+	TMEM241	chr18	20953727	-
In-frame	ENST00000360839	ENST00000444518		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
5CDS-intron	ENST00000360839	ENST00000466438		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
5CDS-intron	ENST00000360839	ENST00000216106		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
In-frame	ENST00000297183	ENST00000444518		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
5CDS-intron	ENST00000297183	ENST00000466438		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
5CDS-intron	ENST00000297183	ENST00000216106		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-3CDS	ENST00000394723	ENST00000444518		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000394723	ENST00000466438		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000394723	ENST00000216106		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-3CDS	ENST00000394722	ENST00000444518		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000394722	ENST00000466438		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000394722	ENST00000216106		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-3CDS	ENST00000462121	ENST00000444518		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000462121	ENST00000466438		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000462121	ENST00000216106		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-3CDS	ENST00000544120	ENST00000444518		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000544120	ENST00000466438		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-intron	ENST00000544120	ENST00000216106		ChiTaRS3.1			AW579419	ANKHD1	chr5	139903760	+	HMGXB4	chr22	35661385	+
intron-3UTR	ENST00000372852	ENST00000354989		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000360031		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000376652		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000433259		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000372852	ENST00000485936		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000354989		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000360031		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000376652		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000433259		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-3UTR	ENST00000535435	ENST00000485936		ChiTaRS3.1			BE270227	HEYL	chr1	40091821	-	ENTPD6	chr20	25206438	+
intron-intron	ENST00000314136	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000314136	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369119	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369119	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369116	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369116	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000436748	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000436748	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369114	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369114	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369115	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000369115	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000533654	ENST00000500765		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-intron	ENST00000533654	ENST00000511543		ChiTaRS3.1			BF367648	ANP32E	chr1	150199076	-	FAM13A-AS1	chr4	89648632	-
intron-3CDS	ENST00000225964	ENST00000320912		ChiTaRS3.1			CA428711	COL1A1	chr17	48263305	+	MRFAP1	chr4	6642800	-
intron-3CDS	ENST00000225964	ENST00000507420		ChiTaRS3.1			CA428711	COL1A1	chr17	48263305	+	MRFAP1	chr4	6642800	-
intron-3CDS	ENST00000225964	ENST00000382581		ChiTaRS3.1			CA428711	COL1A1	chr17	48263305	+	MRFAP1	chr4	6642800	-
intron-3UTR	ENST00000324817	ENST00000337231		ChiTaRS3.1			BM796903	MED14	chrX	40518797	-	CDR2L	chr17	73001246	+
intron-3UTR	ENST00000496531	ENST00000337231		ChiTaRS3.1			BM796903	MED14	chrX	40518797	-	CDR2L	chr17	73001246	+
intron-intron	ENST00000462405	ENST00000452313		ChiTaRS3.1			AV702479	HFM1	chr1	91852921	-	NPIPB7	chr16	28855144	-
intron-intron	ENST00000370425	ENST00000452313		ChiTaRS3.1			AV702479	HFM1	chr1	91852921	-	NPIPB7	chr16	28855144	-
intron-intron	ENST00000294696	ENST00000452313		ChiTaRS3.1			AV702479	HFM1	chr1	91852921	-	NPIPB7	chr16	28855144	-
intron-intron	ENST00000370424	ENST00000452313		ChiTaRS3.1			AV702479	HFM1	chr1	91852921	-	NPIPB7	chr16	28855144	-
intron-intron	ENST00000521662	ENST00000574792		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
intron-5UTR	ENST00000521662	ENST00000373534		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
5UTR-intron	ENST00000521688	ENST00000574792		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
5UTR-5UTR	ENST00000521688	ENST00000373534		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
intron-intron	ENST00000520147	ENST00000574792		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
intron-5UTR	ENST00000520147	ENST00000373534		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
3UTR-intron	ENST00000522407	ENST00000574792		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
3UTR-5UTR	ENST00000522407	ENST00000373534		ChiTaRS3.1			CB129156	ENY2	chr8	110346691	+	TSSK3	chr1	32828232	-
3UTR-3CDS	ENST00000597629	ENST00000311573		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000368340		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000347088		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000361831		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000355499		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000404643		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000407221		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000359205		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000295566		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000368330		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000368339		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000597629	ENST00000535662		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-intron	ENST00000597629	ENST00000405763		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-intron	ENST00000597629	ENST00000438245		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-intron	ENST00000597629	ENST00000476093		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000311573		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000368340		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000347088		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000361831		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000355499		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000404643		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000407221		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000359205		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000295566		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000368330		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000368339		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-3CDS	ENST00000248673	ENST00000535662		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-intron	ENST00000248673	ENST00000405763		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-intron	ENST00000248673	ENST00000438245		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
3UTR-intron	ENST00000248673	ENST00000476093		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000311573		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000368340		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000347088		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000361831		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000355499		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000404643		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000407221		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000359205		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000295566		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000368330		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000368339		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-3CDS	ENST00000594045	ENST00000535662		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-intron	ENST00000594045	ENST00000405763		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-intron	ENST00000594045	ENST00000438245		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
intron-intron	ENST00000594045	ENST00000476093		ChiTaRS3.1			BF930057	ZFP36	chr19	39899819	+	YY1AP1	chr1	155629754	-
5CDS-3UTR	ENST00000529681	ENST00000228506		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
5CDS-intron	ENST00000529681	ENST00000412616		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
5CDS-intron	ENST00000529681	ENST00000535413		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
5CDS-3UTR	ENST00000447027	ENST00000228506		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
5CDS-intron	ENST00000447027	ENST00000412616		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
5CDS-intron	ENST00000447027	ENST00000535413		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
intron-3UTR	ENST00000531082	ENST00000228506		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
intron-intron	ENST00000531082	ENST00000412616		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
intron-intron	ENST00000531082	ENST00000535413		ChiTaRS3.1			BG955818	MUC5B	chr11	1271533	+	MLEC	chr12	121139214	+
intron-intron	ENST00000379028	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000379028	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000379028	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379028	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379028	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000413765	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000413765	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000413765	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000413765	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000413765	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000351718	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000351718	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000351718	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000351718	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000351718	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379024	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000379024	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000379024	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379024	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379024	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379022	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000379022	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000379022	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379022	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000379022	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000425651	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000425651	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000425651	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000425651	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000425651	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000522550	ENST00000309502		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000522550	ENST00000367236		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-5UTR	ENST00000522550	ENST00000337894		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000522550	ENST00000367235		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
intron-intron	ENST00000522550	ENST00000472535		ChiTaRS3.1			X68485	NRCAM	chr7	107939073	-	ADORA1	chr1	203096868	+
3UTR-3UTR	ENST00000546079	ENST00000544840		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000546079	ENST00000434554		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000546079	ENST00000225573		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000546079	ENST00000534893		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000541297	ENST00000544840		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000541297	ENST00000434554		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000541297	ENST00000225573		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000541297	ENST00000534893		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000337392	ENST00000544840		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000337392	ENST00000434554		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000337392	ENST00000225573		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
3UTR-3UTR	ENST00000337392	ENST00000534893		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
intron-3UTR	ENST00000589158	ENST00000544840		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
intron-3UTR	ENST00000589158	ENST00000434554		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
intron-3UTR	ENST00000589158	ENST00000225573		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
intron-3UTR	ENST00000589158	ENST00000534893		ChiTaRS3.1			BM674466	CLPTM1	chr19	45496210	-	PNPO	chr17	46024222	-
intron-3CDS	ENST00000451813	ENST00000380796		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000451813	ENST00000474879		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000451813	ENST00000216080		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-intron	ENST00000451813	ENST00000505981		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000252015	ENST00000380796		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000252015	ENST00000474879		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000252015	ENST00000216080		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-intron	ENST00000252015	ENST00000505981		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000539834	ENST00000380796		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000539834	ENST00000474879		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000539834	ENST00000216080		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-intron	ENST00000539834	ENST00000505981		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000432634	ENST00000380796		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000432634	ENST00000474879		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-3CDS	ENST00000432634	ENST00000216080		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
intron-intron	ENST00000432634	ENST00000505981		ChiTaRS3.1			AK130818	TRPC4AP	chr20	33680462	-	LMF2	chr22	50943935	-
5CDS-intron	ENST00000336452	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000336452	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000336452	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000336458	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000336458	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000336458	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000576930	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000576930	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000576930	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000572815	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000572815	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000572815	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000573542	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000573542	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000573542	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000419711	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000419711	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000419711	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000571955	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000571955	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000571955	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000416016	ENST00000375114		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000416016	ENST00000246194		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
5CDS-intron	ENST00000416016	ENST00000493399		ChiTaRS3.1			BG255468	EIF5A	chr17	7214368	+	RALY	chr20	32602679	+
In-frame	ENST00000392708	ENST00000577628		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000392708	ENST00000261292		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000392708	ENST00000427224		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000392708	ENST00000580036		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000529196	ENST00000577628		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000529196	ENST00000261292		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000529196	ENST00000427224		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
In-frame	ENST00000529196	ENST00000580036		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
5UTR-3CDS	ENST00000531491	ENST00000577628		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
5UTR-3CDS	ENST00000531491	ENST00000261292		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
5UTR-3CDS	ENST00000531491	ENST00000427224		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
5UTR-3CDS	ENST00000531491	ENST00000580036		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
intron-3CDS	ENST00000526364	ENST00000577628		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
intron-3CDS	ENST00000526364	ENST00000261292		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
intron-3CDS	ENST00000526364	ENST00000427224		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
intron-3CDS	ENST00000526364	ENST00000580036		ChiTaRS3.1			AU139929	STT3A	chr11	125472235	+	LIPG	chr18	47091715	+
intron-intron	ENST00000473240	ENST00000382521		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000473240	ENST00000245105		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000473240	ENST00000539824		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000473240	ENST00000514274		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000429691	ENST00000382521		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000429691	ENST00000245105		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000429691	ENST00000539824		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000429691	ENST00000514274		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
5CDS-intron	ENST00000437150	ENST00000382521		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
5CDS-intron	ENST00000437150	ENST00000245105		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
5CDS-intron	ENST00000437150	ENST00000539824		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
5CDS-intron	ENST00000437150	ENST00000514274		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000233612	ENST00000382521		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000233612	ENST00000245105		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000233612	ENST00000539824		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000233612	ENST00000514274		ChiTaRS3.1			BI518724	GCA	chr2	163200786	+	SH3TC1	chr4	8233702	+
intron-intron	ENST00000344749	ENST00000536939		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000344749	ENST00000456907		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-3UTR	ENST00000344749	ENST00000377793		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000344749	ENST00000539656		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000344749	ENST00000542163		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000262965	ENST00000536939		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000262965	ENST00000456907		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-3UTR	ENST00000262965	ENST00000377793		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000262965	ENST00000539656		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000262965	ENST00000542163		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000453954	ENST00000536939		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000453954	ENST00000456907		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-3UTR	ENST00000453954	ENST00000377793		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000453954	ENST00000539656		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000453954	ENST00000542163		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000395423	ENST00000536939		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000395423	ENST00000456907		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-3UTR	ENST00000395423	ENST00000377793		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000395423	ENST00000539656		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000395423	ENST00000542163		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000588136	ENST00000536939		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000588136	ENST00000456907		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-3UTR	ENST00000588136	ENST00000377793		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000588136	ENST00000539656		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
intron-intron	ENST00000588136	ENST00000542163		ChiTaRS3.1			BQ882778	TCF3	chr19	1609946	-	NAA40	chr11	63723488	+
5CDS-5UTR	ENST00000219473	ENST00000566813		ChiTaRS3.1			BM470938	USP10	chr16	84733717	+	CSNK2A2	chr16	58220762	-
5CDS-5UTR	ENST00000219473	ENST00000262506		ChiTaRS3.1			BM470938	USP10	chr16	84733717	+	CSNK2A2	chr16	58220762	-
5UTR-5UTR	ENST00000570191	ENST00000566813		ChiTaRS3.1			BM470938	USP10	chr16	84733717	+	CSNK2A2	chr16	58220762	-
5UTR-5UTR	ENST00000570191	ENST00000262506		ChiTaRS3.1			BM470938	USP10	chr16	84733717	+	CSNK2A2	chr16	58220762	-
3UTR-5UTR	ENST00000562743	ENST00000566813		ChiTaRS3.1			BM470938	USP10	chr16	84733717	+	CSNK2A2	chr16	58220762	-
3UTR-5UTR	ENST00000562743	ENST00000262506		ChiTaRS3.1			BM470938	USP10	chr16	84733717	+	CSNK2A2	chr16	58220762	-
Frame-shit	ENST00000282059	ENST00000357559		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
Frame-shit	ENST00000282059	ENST00000305586		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000282059	ENST00000491674		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000282059	ENST00000491062		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000282059	ENST00000468861		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000282059	ENST00000445140		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000282059	ENST00000480918		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
Frame-shit	ENST00000321319	ENST00000357559		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
Frame-shit	ENST00000321319	ENST00000305586		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000321319	ENST00000491674		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000321319	ENST00000491062		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000321319	ENST00000468861		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000321319	ENST00000445140		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000321319	ENST00000480918		ChiTaRS3.1			AV746723	C18orf25	chr18	43833786	+	FXR1	chr3	180693914	+
5CDS-intron	ENST00000265462	ENST00000542191		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000261368		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000379538		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000379533		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000379536		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000261367		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000414317		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000503116		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000265462	ENST00000504884		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000542191		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000261368		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000379538		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000379533		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000379536		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000261367		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000414317		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000503116		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000352435	ENST00000504884		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000542191		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000261368		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000379538		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000379533		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000379536		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000261367		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000414317		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000503116		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
5CDS-intron	ENST00000347941	ENST00000504884		ChiTaRS3.1			AA992624	PRDX5	chr11	64089135	-	SNCAIP	chr5	121759049	-
3UTR-3CDS	ENST00000412955	ENST00000359568		ChiTaRS3.1			CA427200	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000412955	ENST00000480896		ChiTaRS3.1			CA427200	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3CDS	ENST00000320741	ENST00000359568		ChiTaRS3.1			CA427200	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000320741	ENST00000480896		ChiTaRS3.1			CA427200	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3CDS	ENST00000444204	ENST00000359568		ChiTaRS3.1			CA427200	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000444204	ENST00000480896		ChiTaRS3.1			CA427200	ADIPOQ	chr3	186575861	-	PCNT	chr21	47851864	-
3UTR-3UTR	ENST00000283195	ENST00000373023		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
3UTR-3UTR	ENST00000283195	ENST00000373026		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
3UTR-3UTR	ENST00000283195	ENST00000373024		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
3UTR-intron	ENST00000283195	ENST00000373021		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
3UTR-3UTR	ENST00000283195	ENST00000373027		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
3UTR-intron	ENST00000283195	ENST00000458109		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
3UTR-intron	ENST00000283195	ENST00000467066		ChiTaRS3.1			CR738758	RANBP2	chr2	109401258	+	INPP5B	chr1	38327775	-
intron-3UTR	ENST00000249806	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
intron-3UTR	ENST00000565471	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
intron-3UTR	ENST00000418702	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
intron-3UTR	ENST00000566347	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
intron-3UTR	ENST00000538696	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
intron-3UTR	ENST00000564752	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
intron-3UTR	ENST00000569336	ENST00000309575		ChiTaRS3.1			BQ188039	CLN6	chr15	68499350	-	CHST2	chr3	142841558	+
5CDS-3UTR	ENST00000319694	ENST00000316156		ChiTaRS3.1			AA773931	PRR15	chr7	29606082	+	MAP7D1	chr1	36646379	+
5CDS-3UTR	ENST00000319694	ENST00000373150		ChiTaRS3.1			AA773931	PRR15	chr7	29606082	+	MAP7D1	chr1	36646379	+
5CDS-3UTR	ENST00000319694	ENST00000373151		ChiTaRS3.1			AA773931	PRR15	chr7	29606082	+	MAP7D1	chr1	36646379	+
5CDS-intron	ENST00000319694	ENST00000474796		ChiTaRS3.1			AA773931	PRR15	chr7	29606082	+	MAP7D1	chr1	36646379	+
5CDS-3UTR	ENST00000319694	ENST00000373148		ChiTaRS3.1			AA773931	PRR15	chr7	29606082	+	MAP7D1	chr1	36646379	+
In-frame	ENST00000265881	ENST00000414242		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000265881	ENST00000361479		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
5CDS-intron	ENST00000265881	ENST00000496525		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000544196	ENST00000414242		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000544196	ENST00000361479		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
5CDS-intron	ENST00000544196	ENST00000496525		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000539754	ENST00000414242		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000539754	ENST00000361479		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
5CDS-intron	ENST00000539754	ENST00000496525		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000539275	ENST00000414242		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
In-frame	ENST00000539275	ENST00000361479		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
5CDS-intron	ENST00000539275	ENST00000496525		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
intron-3CDS	ENST00000538791	ENST00000414242		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
intron-3CDS	ENST00000538791	ENST00000361479		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
intron-intron	ENST00000538791	ENST00000496525		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
intron-3CDS	ENST00000544507	ENST00000414242		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
intron-3CDS	ENST00000544507	ENST00000361479		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
intron-intron	ENST00000544507	ENST00000496525		ChiTaRS3.1			BP213105	REXO2	chr11	114311417	+	MPHOSPH8	chr13	20221142	+
3UTR-3UTR	ENST00000287908	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
3UTR-3UTR	ENST00000287908	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
3UTR-intron	ENST00000287908	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394626	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394626	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-intron	ENST00000394626	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
3UTR-3UTR	ENST00000394622	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
3UTR-3UTR	ENST00000394622	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
3UTR-intron	ENST00000394622	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394632	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394632	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-intron	ENST00000394632	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394621	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394621	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-intron	ENST00000394621	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000402625	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000402625	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-intron	ENST00000402625	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394629	ENST00000280154		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-3UTR	ENST00000394629	ENST00000393104		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
intron-intron	ENST00000394629	ENST00000481353		ChiTaRS3.1			AY008445	STEAP2	chr7	89863908	+	PDCD4	chr10	112659513	+
5CDS-intron	ENST00000563679	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000563679	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000325823	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000447912	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000535621	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000455313	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000396410	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000569715	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000563679		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000325823		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000447912		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000535621		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000455313		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000396410		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000569715		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
5CDS-intron	ENST00000450288	ENST00000450288		ChiTaRS3.1			AI133627	PDXDC1	chr16	15120563	+	PDXDC1	chrX	153626845	+
intron-intron	ENST00000608456	ENST00000543470		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608456	ENST00000366960		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608456	ENST00000366959		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608456	ENST00000543354		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608456	ENST00000490299		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000368377	ENST00000543470		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000368377	ENST00000366960		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000368377	ENST00000366959		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000368377	ENST00000543354		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000368377	ENST00000490299		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608295	ENST00000543470		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608295	ENST00000366960		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608295	ENST00000366959		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608295	ENST00000543354		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608295	ENST00000490299		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000398153	ENST00000543470		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000398153	ENST00000366960		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000398153	ENST00000366959		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000398153	ENST00000543354		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000398153	ENST00000490299		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608284	ENST00000543470		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608284	ENST00000366960		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608284	ENST00000366959		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608284	ENST00000543354		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-intron	ENST00000608284	ENST00000490299		ChiTaRS3.1			AA626066	HDDC2	chr6	125597391	+	RPS6KC1	chr1	213290753	-
intron-3CDS	ENST00000408667	ENST00000392302		ChiTaRS3.1			X62947	MIR548F1	chr1	186332090	-	NTRK1	chr1	156845411	+
intron-3CDS	ENST00000408667	ENST00000368196		ChiTaRS3.1			X62947	MIR548F1	chr1	186332090	-	NTRK1	chr1	156845411	+
intron-3CDS	ENST00000408667	ENST00000524377		ChiTaRS3.1			X62947	MIR548F1	chr1	186332090	-	NTRK1	chr1	156845411	+
intron-3CDS	ENST00000408667	ENST00000358660		ChiTaRS3.1			X62947	MIR548F1	chr1	186332090	-	NTRK1	chr1	156845411	+
intron-intron	ENST00000408667	ENST00000531606		ChiTaRS3.1			X62947	MIR548F1	chr1	186332090	-	NTRK1	chr1	156845411	+
intron-3CDS	ENST00000249299	ENST00000238571		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000249299	ENST00000325680		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000249299	ENST00000552421		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-intron	ENST00000249299	ENST00000546901		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000424702	ENST00000238571		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000424702	ENST00000325680		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000424702	ENST00000552421		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-intron	ENST00000424702	ENST00000546901		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000422760	ENST00000238571		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000422760	ENST00000325680		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-3CDS	ENST00000422760	ENST00000552421		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-intron	ENST00000422760	ENST00000546901		ChiTaRS3.1			AW274870	NAA38	chr17	7760355	+	YLPM1	chr14	75276160	-
intron-5UTR	ENST00000164024	ENST00000469379		ChiTaRS3.1			BM126601	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-3UTR	ENST00000164024	ENST00000331808		ChiTaRS3.1			BM126601	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-5UTR	ENST00000544264	ENST00000469379		ChiTaRS3.1			BM126601	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-3UTR	ENST00000544264	ENST00000331808		ChiTaRS3.1			BM126601	CELSR3	chr3	48673991	+	DEXI	chr16	11035553	+
intron-3UTR	ENST00000408742	ENST00000245206		ChiTaRS3.1			AK129856	MIR548N	chr2	179437433	-	GOT2	chr16	58741800	-
intron-3UTR	ENST00000408742	ENST00000434819		ChiTaRS3.1			AK129856	MIR548N	chr2	179437433	-	GOT2	chr16	58741800	-
intron-intron	ENST00000408742	ENST00000564400		ChiTaRS3.1			AK129856	MIR548N	chr2	179437433	-	GOT2	chr16	58741800	-
In-frame	ENST00000319670	ENST00000216027		ChiTaRS3.1			CR993366	ARHGEF18	chr19	7516152	+	HSCB	chr22	29153064	+
5CDS-3UTR	ENST00000319670	ENST00000398941		ChiTaRS3.1			CR993366	ARHGEF18	chr19	7516152	+	HSCB	chr22	29153064	+
5CDS-3UTR	ENST00000319670	ENST00000495977		ChiTaRS3.1			CR993366	ARHGEF18	chr19	7516152	+	HSCB	chr22	29153064	+
In-frame	ENST00000359920	ENST00000216027		ChiTaRS3.1			CR993366	ARHGEF18	chr19	7516152	+	HSCB	chr22	29153064	+
5CDS-3UTR	ENST00000359920	ENST00000398941		ChiTaRS3.1			CR993366	ARHGEF18	chr19	7516152	+	HSCB	chr22	29153064	+
5CDS-3UTR	ENST00000359920	ENST00000495977		ChiTaRS3.1			CR993366	ARHGEF18	chr19	7516152	+	HSCB	chr22	29153064	+
5CDS-5UTR	ENST00000293618	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
5CDS-5UTR	ENST00000429001	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
5CDS-5UTR	ENST00000398473	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
5CDS-5UTR	ENST00000518444	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
5CDS-5UTR	ENST00000347328	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
5CDS-5UTR	ENST00000522085	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
5UTR-5UTR	ENST00000518561	ENST00000297689		ChiTaRS3.1			DA585128	LARP4	chr12	50794811	+	NFIL3	chr9	94173190	-
3UTR-3CDS	ENST00000175756	ENST00000262139		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
3UTR-5UTR	ENST00000175756	ENST00000589459		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
3UTR-5UTR	ENST00000175756	ENST00000546360		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
3UTR-3CDS	ENST00000347849	ENST00000262139		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
3UTR-5UTR	ENST00000347849	ENST00000589459		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
3UTR-5UTR	ENST00000347849	ENST00000546360		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
intron-3CDS	ENST00000420717	ENST00000262139		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
intron-5UTR	ENST00000420717	ENST00000589459		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
intron-5UTR	ENST00000420717	ENST00000546360		ChiTaRS3.1			BE694982	PTPN18	chr2	131131756	+	WIPI1	chr17	66417914	-
intron-3UTR	ENST00000464611	ENST00000396081		ChiTaRS3.1			BM352323	ACTB	chr7	5568039	-	HERPUD2	chr7	35673000	-
intron-3UTR	ENST00000464611	ENST00000311350		ChiTaRS3.1			BM352323	ACTB	chr7	5568039	-	HERPUD2	chr7	35673000	-
intron-intron	ENST00000464611	ENST00000426180		ChiTaRS3.1			BM352323	ACTB	chr7	5568039	-	HERPUD2	chr7	35673000	-
intron-3UTR	ENST00000331789	ENST00000396081		ChiTaRS3.1			BM352323	ACTB	chr7	5568039	-	HERPUD2	chr7	35673000	-
intron-3UTR	ENST00000331789	ENST00000311350		ChiTaRS3.1			BM352323	ACTB	chr7	5568039	-	HERPUD2	chr7	35673000	-
intron-intron	ENST00000331789	ENST00000426180		ChiTaRS3.1			BM352323	ACTB	chr7	5568039	-	HERPUD2	chr7	35673000	-
3UTR-5UTR	ENST00000410024	ENST00000368575		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000410024	ENST00000462680		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000409295	ENST00000368575		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000409295	ENST00000462680		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000409091	ENST00000368575		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000409091	ENST00000462680		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000350033	ENST00000368575		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000350033	ENST00000462680		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000410017	ENST00000368575		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000410017	ENST00000462680		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000373608	ENST00000368575		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-5UTR	ENST00000373608	ENST00000462680		ChiTaRS3.1			CN310211	COPS7B	chr2	232672371	+	RAB13	chr1	153958717	-
3UTR-3UTR	ENST00000422447	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
3UTR-3UTR	ENST00000430553	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
3UTR-3UTR	ENST00000396222	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
3UTR-3UTR	ENST00000227157	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
3UTR-3UTR	ENST00000540430	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
3UTR-3UTR	ENST00000379412	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
intron-3UTR	ENST00000542179	ENST00000373218		ChiTaRS3.1			CA414218	LDHA	chr11	18429072	-	EIF4EBP2	chr10	72181544	-
5UTR-3CDS	ENST00000265295	ENST00000429927		ChiTaRS3.1			CB137971	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
5UTR-3CDS	ENST00000265295	ENST00000307465		ChiTaRS3.1			CB137971	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
3UTR-3CDS	ENST00000510751	ENST00000429927		ChiTaRS3.1			CB137971	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
3UTR-3CDS	ENST00000510751	ENST00000307465		ChiTaRS3.1			CB137971	SPDL1	chr5	169010896	+	CDKL2	chr4	76507110	-
intron-5UTR	ENST00000449985	ENST00000373316		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000449985	ENST00000442431		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000449985	ENST00000537456		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000449985	ENST00000476531		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-5UTR	ENST00000532998	ENST00000373316		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000532998	ENST00000442431		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000532998	ENST00000537456		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000532998	ENST00000476531		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-5UTR	ENST00000437139	ENST00000373316		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000437139	ENST00000442431		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000437139	ENST00000537456		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000437139	ENST00000476531		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-5UTR	ENST00000533070	ENST00000373316		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000533070	ENST00000442431		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000533070	ENST00000537456		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000533070	ENST00000476531		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-5UTR	ENST00000316425	ENST00000373316		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000316425	ENST00000442431		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000316425	ENST00000537456		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000316425	ENST00000476531		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-5UTR	ENST00000431792	ENST00000373316		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000431792	ENST00000442431		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000431792	ENST00000537456		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
intron-intron	ENST00000431792	ENST00000476531		ChiTaRS3.1			DC340832	TMEM107	chr17	8076771	-	PGK1	chrX	77359744	+
Frame-shit	ENST00000332050	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000332050	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000332050	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
In-frame	ENST00000332050	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000397938	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000397938	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000397938	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
In-frame	ENST00000397938	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000406548	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000406548	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000406548	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
In-frame	ENST00000406548	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000331029	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000331029	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000331029	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
In-frame	ENST00000331029	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000414183	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000414183	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000414183	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
In-frame	ENST00000414183	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
intron-3CDS	ENST00000333395	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
intron-3CDS	ENST00000333395	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
intron-3CDS	ENST00000333395	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
intron-3CDS	ENST00000333395	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000332035	ENST00000295598		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000332035	ENST00000537345		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
Frame-shit	ENST00000332035	ENST00000369496		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
In-frame	ENST00000332035	ENST00000491156		ChiTaRS3.1			BU629169	EWSR1	chr22	29695819	-	ATP1A1	chr1	116931346	-
intron-intron	ENST00000352393	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000352393	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000352393	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000352393	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317677	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317677	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317677	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317677	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397445	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397445	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397445	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397445	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317619	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317619	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317619	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000317619	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397443	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397443	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397443	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397443	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397446	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397446	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397446	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397446	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397442	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397442	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397442	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000397442	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000475146	ENST00000404479		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000475146	ENST00000318709		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000475146	ENST00000459629		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
intron-intron	ENST00000475146	ENST00000409301		ChiTaRS3.1			CN371894	CPNE1	chr20	34243038	-	AVL9	chr7	32909878	-
5CDS-3UTR	ENST00000322038	ENST00000331595		ChiTaRS3.1			AX746813	TSHZ1	chr18	72999940	+	BGN	chrX	152774612	+
5CDS-3UTR	ENST00000322038	ENST00000480756		ChiTaRS3.1			AX746813	TSHZ1	chr18	72999940	+	BGN	chrX	152774612	+
5CDS-3UTR	ENST00000580243	ENST00000331595		ChiTaRS3.1			AX746813	TSHZ1	chr18	72999940	+	BGN	chrX	152774612	+
5CDS-3UTR	ENST00000580243	ENST00000480756		ChiTaRS3.1			AX746813	TSHZ1	chr18	72999940	+	BGN	chrX	152774612	+
3UTR-intron	ENST00000256951	ENST00000430853		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000424161		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000419253		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000454741		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000453632		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000454996		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000428818		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000435348		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000434221		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000437713		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000417381		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000430525		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000452612		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000425112		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000417497		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000428584		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000433317		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-intron	ENST00000256951	ENST00000426594		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000430853		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000424161		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000419253		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000454741		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000453632		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000454996		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000428818		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000435348		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000434221		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000437713		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000417381		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000430525		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000452612		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000425112		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000417497		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000428584		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000433317		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000537612	ENST00000426594		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000430853		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000424161		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000419253		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000454741		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000453632		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000454996		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000428818		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000435348		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000434221		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000437713		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000417381		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000430525		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000452612		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000425112		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000417497		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000428584		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000433317		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000431267	ENST00000426594		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000430853		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000424161		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000419253		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000454741		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000453632		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000454996		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000428818		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000435348		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000434221		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000437713		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000417381		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000430525		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000452612		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000425112		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000417497		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000428584		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000433317		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000544053	ENST00000426594		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000430853		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000424161		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000419253		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000454741		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000453632		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000454996		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000428818		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000435348		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000434221		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000437713		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000417381		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000430525		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000452612		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000425112		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000417497		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000428584		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000433317		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000542289	ENST00000426594		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000430853		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000424161		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000419253		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000454741		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000453632		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000454996		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000428818		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000435348		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000434221		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000437713		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000417381		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000430525		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000452612		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000425112		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000417497		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000428584		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000433317		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
intron-intron	ENST00000396301	ENST00000426594		ChiTaRS3.1			BG315010	EMP1	chr12	13368917	+	TTC28-AS1	chr22	28378528	-
3UTR-3CDS	ENST00000424347	ENST00000264211		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-3CDS	ENST00000424347	ENST00000400422		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-3CDS	ENST00000424347	ENST00000602326		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-3CDS	ENST00000424347	ENST00000374935		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-3CDS	ENST00000424347	ENST00000374937		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-3CDS	ENST00000424347	ENST00000536266		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-intron	ENST00000424347	ENST00000374933		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-intron	ENST00000424347	ENST00000544689		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-intron	ENST00000424347	ENST00000356916		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-intron	ENST00000424347	ENST00000374927		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
3UTR-intron	ENST00000424347	ENST00000537738		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000415759	ENST00000264211		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000415759	ENST00000400422		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000415759	ENST00000602326		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000415759	ENST00000374935		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000415759	ENST00000374937		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000415759	ENST00000536266		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000415759	ENST00000374933		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000415759	ENST00000544689		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000415759	ENST00000356916		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000415759	ENST00000374927		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000415759	ENST00000537738		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376597	ENST00000264211		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376597	ENST00000400422		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376597	ENST00000602326		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376597	ENST00000374935		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376597	ENST00000374937		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376597	ENST00000536266		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376597	ENST00000374933		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376597	ENST00000544689		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376597	ENST00000356916		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376597	ENST00000374927		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376597	ENST00000537738		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000277082	ENST00000264211		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000277082	ENST00000400422		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000277082	ENST00000602326		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000277082	ENST00000374935		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000277082	ENST00000374937		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000277082	ENST00000536266		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000277082	ENST00000374933		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000277082	ENST00000544689		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000277082	ENST00000356916		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000277082	ENST00000374927		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000277082	ENST00000537738		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376598	ENST00000264211		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376598	ENST00000400422		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376598	ENST00000602326		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376598	ENST00000374935		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376598	ENST00000374937		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000376598	ENST00000536266		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376598	ENST00000374933		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376598	ENST00000544689		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376598	ENST00000356916		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376598	ENST00000374927		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000376598	ENST00000537738		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000487108	ENST00000264211		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000487108	ENST00000400422		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000487108	ENST00000602326		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000487108	ENST00000374935		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000487108	ENST00000374937		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000487108	ENST00000536266		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000487108	ENST00000374933		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000487108	ENST00000544689		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000487108	ENST00000356916		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000487108	ENST00000374927		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-intron	ENST00000487108	ENST00000537738		ChiTaRS3.1			AU132189	CEP78	chr9	80886278	+	EIF4G3	chr1	21191120	-
intron-3CDS	ENST00000283928	ENST00000355078		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-3CDS	ENST00000283928	ENST00000302763		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-intron	ENST00000283928	ENST00000518825		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-intron	ENST00000283928	ENST00000520400		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-intron	ENST00000283928	ENST00000540387		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-3CDS	ENST00000466516	ENST00000355078		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-3CDS	ENST00000466516	ENST00000302763		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-intron	ENST00000466516	ENST00000518825		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-intron	ENST00000466516	ENST00000520400		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-intron	ENST00000466516	ENST00000540387		ChiTaRS3.1			DC422616	JAZF1	chr7	28220328	-	CTNNA1	chr5	138089112	+
intron-3UTR	ENST00000465150	ENST00000562057		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000465150	ENST00000344051		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000465150	ENST00000431806		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000562057		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000344051		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000376582	ENST00000431806		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000562057		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000344051		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000396779	ENST00000431806		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000562057		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000344051		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000495490	ENST00000431806		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000562057		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000344051		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-3UTR	ENST00000472645	ENST00000431806		ChiTaRS3.1			BM968551	TIMM17B	chrX	48751045	+	SPINT1	chr15	41149567	-
intron-intron	ENST00000371222	ENST00000215882		ChiTaRS3.1			CD614306	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000451283		ChiTaRS3.1			CD614306	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000461267		ChiTaRS3.1			CD614306	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
5CDS-3UTR	ENST00000392011	ENST00000582730		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000392011	ENST00000581497		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000392011	ENST00000584773		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000392011	ENST00000585096		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000392011	ENST00000258962		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-3UTR	ENST00000409212	ENST00000582730		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000409212	ENST00000581497		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000409212	ENST00000584773		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000409212	ENST00000585096		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000409212	ENST00000258962		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-3UTR	ENST00000344528	ENST00000582730		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000344528	ENST00000581497		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000344528	ENST00000584773		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000344528	ENST00000585096		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
5CDS-intron	ENST00000344528	ENST00000258962		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
intron-3UTR	ENST00000489601	ENST00000582730		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
intron-intron	ENST00000489601	ENST00000581497		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
intron-intron	ENST00000489601	ENST00000584773		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
intron-intron	ENST00000489601	ENST00000585096		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
intron-intron	ENST00000489601	ENST00000258962		ChiTaRS3.1			BP424923	SH3BP4	chr2	235950389	+	SRSF1	chr17	56081463	-
intron-3UTR	ENST00000493559	ENST00000357325		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000493559	ENST00000537739		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000493559	ENST00000368209		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000493559	ENST00000465180		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000493559	ENST00000416666		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000493559	ENST00000368206		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000608872	ENST00000357325		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000608872	ENST00000537739		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000608872	ENST00000368209		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000608872	ENST00000465180		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000608872	ENST00000416666		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000608872	ENST00000368206		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000340778	ENST00000357325		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000340778	ENST00000537739		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-3UTR	ENST00000340778	ENST00000368209		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000340778	ENST00000465180		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000340778	ENST00000416666		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000340778	ENST00000368206		ChiTaRS3.1			BG340155	FBXW2	chr9	123526696	-	HDGF	chr1	156712140	-
intron-intron	ENST00000518164	ENST00000400921		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000518164	ENST00000400920		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000518164	ENST00000479263		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000521291	ENST00000400921		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000521291	ENST00000400920		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000521291	ENST00000479263		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000396070	ENST00000400921		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000396070	ENST00000400920		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000396070	ENST00000479263		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000287038	ENST00000400921		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000287038	ENST00000400920		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
5CDS-intron	ENST00000287038	ENST00000479263		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000523172	ENST00000400921		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000523172	ENST00000400920		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000523172	ENST00000479263		ChiTaRS3.1			BU526580	RPL30	chr8	99053947	-	PRKCZ	chr1	2065738	+
intron-intron	ENST00000311713	ENST00000369851		ChiTaRS3.1			DA363950	WDR74	chr11	62609182	-	GNAI3	chr1	110091206	+
intron-intron	ENST00000278856	ENST00000369851		ChiTaRS3.1			DA363950	WDR74	chr11	62609182	-	GNAI3	chr1	110091206	+
intron-intron	ENST00000529106	ENST00000369851		ChiTaRS3.1			DA363950	WDR74	chr11	62609182	-	GNAI3	chr1	110091206	+
intron-intron	ENST00000525239	ENST00000369851		ChiTaRS3.1			DA363950	WDR74	chr11	62609182	-	GNAI3	chr1	110091206	+
intron-intron	ENST00000525752	ENST00000369851		ChiTaRS3.1			DA363950	WDR74	chr11	62609182	-	GNAI3	chr1	110091206	+
intron-intron	ENST00000540620	ENST00000369851		ChiTaRS3.1			DA363950	WDR74	chr11	62609182	-	GNAI3	chr1	110091206	+
5CDS-3UTR	ENST00000310118	ENST00000007699		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
5CDS-intron	ENST00000310118	ENST00000570627		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
intron-3UTR	ENST00000435761	ENST00000007699		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
intron-intron	ENST00000435761	ENST00000570627		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
intron-3UTR	ENST00000439383	ENST00000007699		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
intron-intron	ENST00000439383	ENST00000570627		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
3UTR-3UTR	ENST00000459910	ENST00000007699		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
3UTR-intron	ENST00000459910	ENST00000570627		ChiTaRS3.1			CA336584	PSMD2	chr3	184017189	+	YBX2	chr17	7191643	-
intron-3UTR	ENST00000265729	ENST00000357037		ChiTaRS3.1			BU173706	SRI	chr7	87838679	-	PTRF	chr17	40556393	-
intron-3UTR	ENST00000419179	ENST00000357037		ChiTaRS3.1			BU173706	SRI	chr7	87838679	-	PTRF	chr17	40556393	-
intron-3UTR	ENST00000490437	ENST00000357037		ChiTaRS3.1			BU173706	SRI	chr7	87838679	-	PTRF	chr17	40556393	-
intron-3UTR	ENST00000394641	ENST00000357037		ChiTaRS3.1			BU173706	SRI	chr7	87838679	-	PTRF	chr17	40556393	-
intron-3UTR	ENST00000431660	ENST00000357037		ChiTaRS3.1			BU173706	SRI	chr7	87838679	-	PTRF	chr17	40556393	-
3UTR-3CDS	ENST00000496593	ENST00000482108		ChiTaRS3.1			AI678051	RPLP0P2	chr11	61405070	-	PEG10	chr7	94292946	-
3UTR-3CDS	ENST00000496593	ENST00000488574		ChiTaRS3.1			AI678051	RPLP0P2	chr11	61405070	-	PEG10	chr7	94292946	-
3UTR-intron	ENST00000496593	ENST00000465184		ChiTaRS3.1			AI678051	RPLP0P2	chr11	61405070	-	PEG10	chr7	94292946	-
3UTR-intron	ENST00000369550	ENST00000421515		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000388759		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000443659		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000425478		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000437230		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000412028		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000415901		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
3UTR-intron	ENST00000369550	ENST00000416026		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000421515		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000388759		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000443659		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000425478		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000437230		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000412028		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000415901		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
intron-intron	ENST00000475966	ENST00000416026		ChiTaRS3.1			BI000195	DKC1	chrX	154005576	+	NKIRAS1	chr3	23961220	+
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BQ890189	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BQ890189	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
intron-intron	ENST00000443149	ENST00000401061		ChiTaRS3.1			AX746943	KIAA2026	chr9	5919772	-	MMACHC	chr1	45980272	-
intron-intron	ENST00000443149	ENST00000477188		ChiTaRS3.1			AX746943	KIAA2026	chr9	5919772	-	MMACHC	chr1	45980272	-
intron-intron	ENST00000399933	ENST00000401061		ChiTaRS3.1			AX746943	KIAA2026	chr9	5919772	-	MMACHC	chr1	45980272	-
intron-intron	ENST00000399933	ENST00000477188		ChiTaRS3.1			AX746943	KIAA2026	chr9	5919772	-	MMACHC	chr1	45980272	-
intron-intron	ENST00000381461	ENST00000401061		ChiTaRS3.1			AX746943	KIAA2026	chr9	5919772	-	MMACHC	chr1	45980272	-
intron-intron	ENST00000381461	ENST00000477188		ChiTaRS3.1			AX746943	KIAA2026	chr9	5919772	-	MMACHC	chr1	45980272	-
intron-3CDS	ENST00000291572	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000291572	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000291572	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000398061	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398061	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398061	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000327505	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000327505	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000327505	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000398063	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398063	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000398063	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
5UTR-3CDS	ENST00000398058	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
5UTR-intron	ENST00000398058	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
5UTR-intron	ENST00000398058	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000546158	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000546158	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000546158	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000479117	ENST00000368081		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000479117	ENST00000418334		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-intron	ENST00000479117	ENST00000470705		ChiTaRS3.1			DB062417	AGPAT3	chr21	45366941	+	ATP1A4	chr1	160136317	+
intron-3CDS	ENST00000392676	ENST00000358337		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000392676	ENST00000520764		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000392677	ENST00000358337		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000392677	ENST00000520764		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000588877	ENST00000358337		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000588877	ENST00000520764		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000589609	ENST00000358337		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000589609	ENST00000520764		ChiTaRS3.1			AK000202	ABCA5	chr17	67279764	-	WDR55	chr5	140048506	+
intron-3CDS	ENST00000394947	ENST00000394947		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000394947	ENST00000360439		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000394947	ENST00000394949		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-intron	ENST00000394947	ENST00000567289		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000360439	ENST00000394947		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000360439	ENST00000360439		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000360439	ENST00000394949		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-intron	ENST00000360439	ENST00000567289		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000394949	ENST00000394947		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000394949	ENST00000360439		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000394949	ENST00000394949		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-intron	ENST00000394949	ENST00000567289		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000567289	ENST00000394947		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000567289	ENST00000360439		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3CDS	ENST00000567289	ENST00000394949		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-intron	ENST00000567289	ENST00000567289		ChiTaRS3.1			AW851387	SIN3A	chr15	75676615	-	SIN3A	chr15	75688696	-
intron-3UTR	ENST00000205386	ENST00000375458		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000205386	ENST00000342193		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000205386	ENST00000409184		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000205386	ENST00000392717		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000205386	ENST00000194871		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000205386	ENST00000491126		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388781	ENST00000375458		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388781	ENST00000342193		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388781	ENST00000409184		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388781	ENST00000392717		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000388781	ENST00000194871		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000388781	ENST00000491126		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388780	ENST00000375458		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388780	ENST00000342193		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388780	ENST00000409184		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000388780	ENST00000392717		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000388780	ENST00000194871		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000388780	ENST00000491126		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000418464	ENST00000375458		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000418464	ENST00000342193		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000418464	ENST00000409184		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000418464	ENST00000392717		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000418464	ENST00000194871		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000418464	ENST00000491126		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000414450	ENST00000375458		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000414450	ENST00000342193		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000414450	ENST00000409184		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000414450	ENST00000392717		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000414450	ENST00000194871		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000414450	ENST00000491126		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000483484	ENST00000375458		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000483484	ENST00000342193		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000483484	ENST00000409184		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-3UTR	ENST00000483484	ENST00000392717		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000483484	ENST00000194871		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-intron	ENST00000483484	ENST00000491126		ChiTaRS3.1			AK075165	LAMB4	chr7	107664222	-	COBLL1	chr2	165541941	-
intron-5UTR	ENST00000341511	ENST00000380155		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000341511	ENST00000495743		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-5UTR	ENST00000265662	ENST00000380155		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000265662	ENST00000495743		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-5UTR	ENST00000371605	ENST00000380155		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000371605	ENST00000495743		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-5UTR	ENST00000492260	ENST00000380155		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-intron	ENST00000492260	ENST00000495743		ChiTaRS3.1			BC041042	ABCA2	chr9	139906125	-	SYAP1	chrX	16737776	+
intron-3UTR	ENST00000484157	ENST00000278379		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
intron-3UTR	ENST00000484157	ENST00000395750		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
intron-3UTR	ENST00000484157	ENST00000395753		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
intron-intron	ENST00000484157	ENST00000606205		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
intron-intron	ENST00000484157	ENST00000479543		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-3UTR	ENST00000303343	ENST00000278379		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-3UTR	ENST00000303343	ENST00000395750		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-3UTR	ENST00000303343	ENST00000395753		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-intron	ENST00000303343	ENST00000606205		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-intron	ENST00000303343	ENST00000479543		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-3UTR	ENST00000368404	ENST00000278379		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-3UTR	ENST00000368404	ENST00000395750		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-3UTR	ENST00000368404	ENST00000395753		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-intron	ENST00000368404	ENST00000606205		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5CDS-intron	ENST00000368404	ENST00000479543		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5UTR-3UTR	ENST00000368401	ENST00000278379		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5UTR-3UTR	ENST00000368401	ENST00000395750		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5UTR-3UTR	ENST00000368401	ENST00000395753		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5UTR-intron	ENST00000368401	ENST00000606205		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
5UTR-intron	ENST00000368401	ENST00000479543		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
3UTR-3UTR	ENST00000368405	ENST00000278379		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
3UTR-3UTR	ENST00000368405	ENST00000395750		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
3UTR-3UTR	ENST00000368405	ENST00000395753		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
3UTR-intron	ENST00000368405	ENST00000606205		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
3UTR-intron	ENST00000368405	ENST00000479543		ChiTaRS3.1			DA269573	SLC50A1	chr1	155108396	+	SLC1A2	chr11	35280230	-
intron-intron	ENST00000380542	ENST00000393020		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-5UTR	ENST00000380542	ENST00000529221		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-5UTR	ENST00000380542	ENST00000314756		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000380542	ENST00000483239		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000380542	ENST00000478125		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000469089	ENST00000393020		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-5UTR	ENST00000469089	ENST00000529221		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-5UTR	ENST00000469089	ENST00000314756		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000469089	ENST00000483239		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000469089	ENST00000478125		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000526115	ENST00000393020		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-5UTR	ENST00000526115	ENST00000529221		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-5UTR	ENST00000526115	ENST00000314756		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000526115	ENST00000483239		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
intron-intron	ENST00000526115	ENST00000478125		ChiTaRS3.1			DB028446	NAP1L4	chr11	2985001	-	TTC12	chr11	113185313	+
Frame-shit	ENST00000332050	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332050	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332050	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000397938	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000397938	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000406548	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000406548	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000331029	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000331029	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000414183	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000414183	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000333395	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000333395	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000398907		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000398905		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000288319		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000398897		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000398911		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000398910		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000417133		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000442448		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000453032		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000398919		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332035	ENST00000429727		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332035	ENST00000485493		ChiTaRS3.1			S72865	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
3UTR-3CDS	ENST00000343526	ENST00000343702		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000343526	ENST00000344911		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000343526	ENST00000538383		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000343526	ENST00000553059		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-intron	ENST00000343526	ENST00000552603		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000415680	ENST00000343702		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000415680	ENST00000344911		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000415680	ENST00000538383		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3CDS	ENST00000415680	ENST00000553059		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-intron	ENST00000415680	ENST00000552603		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
intron-3CDS	ENST00000497516	ENST00000343702		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
intron-3CDS	ENST00000497516	ENST00000344911		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
intron-3CDS	ENST00000497516	ENST00000538383		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
intron-3CDS	ENST00000497516	ENST00000553059		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
intron-intron	ENST00000497516	ENST00000552603		ChiTaRS3.1			AI027770	TRIM24	chr7	138269982	-	NTN4	chr12	96076491	+
3UTR-3UTR	ENST00000603302	ENST00000262030		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000603302	ENST00000552919		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-intron	ENST00000603302	ENST00000550162		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000403312	ENST00000262030		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000403312	ENST00000552919		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-intron	ENST00000403312	ENST00000550162		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000309522	ENST00000262030		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000309522	ENST00000552919		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-intron	ENST00000309522	ENST00000550162		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000505878	ENST00000262030		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000505878	ENST00000552919		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-intron	ENST00000505878	ENST00000550162		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000454409	ENST00000262030		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-3UTR	ENST00000454409	ENST00000552919		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
3UTR-intron	ENST00000454409	ENST00000550162		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
intron-3UTR	ENST00000510728	ENST00000262030		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
intron-3UTR	ENST00000510728	ENST00000552919		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
intron-intron	ENST00000510728	ENST00000550162		ChiTaRS3.1			AW375766	HADH	chr4	108955967	+	ATP5B	chr12	57032076	-
intron-intron	ENST00000303635	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000303635	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000303635	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000303635	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000303635	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000439411	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000439411	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000439411	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000439411	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000439411	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476163	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476163	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476163	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476163	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476163	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000557126	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000557126	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000557126	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000557126	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000557126	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000473578	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000473578	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000473578	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000473578	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000473578	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000467404	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000467404	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000467404	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000467404	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000467404	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476864	ENST00000400427		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476864	ENST00000400424		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476864	ENST00000408910		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476864	ENST00000408989		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-intron	ENST00000476864	ENST00000400423		ChiTaRS3.1			EL582469	CAMTA1	chr1	7553463	+	UMODL1	chr21	43542800	-
intron-3CDS	ENST00000375911	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000375911	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000375911	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000366431	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000366431	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000366431	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000431256	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000431256	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000431256	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000418357	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000418357	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000418357	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000366432	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000366432	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000366432	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000442972	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000442972	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000442972	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000413113	ENST00000272167		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-3CDS	ENST00000413113	ENST00000366837		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
intron-intron	ENST00000413113	ENST00000467015		ChiTaRS3.1			AI636871	C6orf47	chr6	2957246	+	EPHX1	chr1	226026468	-
Frame-shit	ENST00000316218	ENST00000317881		ChiTaRS3.1			CX752117	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
5CDS-3UTR	ENST00000316218	ENST00000460013		ChiTaRS3.1			CX752117	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
3UTR-3CDS	ENST00000467157	ENST00000317881		ChiTaRS3.1			CX752117	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
3UTR-3UTR	ENST00000467157	ENST00000460013		ChiTaRS3.1			CX752117	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
intron-intron	ENST00000473442	ENST00000396353		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000396355		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000396354		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000342673		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000571896		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000396353		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000396355		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000396354		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000342673		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000571896		ChiTaRS3.1			AX747595	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
In-frame	ENST00000534358	ENST00000409236		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000534358	ENST00000356421		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000534358	ENST00000317233		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000534358	ENST00000409579		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
5CDS-intron	ENST00000534358	ENST00000483600		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000389506	ENST00000409236		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000389506	ENST00000356421		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000389506	ENST00000317233		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000389506	ENST00000409579		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
5CDS-intron	ENST00000389506	ENST00000483600		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000354520	ENST00000409236		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000354520	ENST00000356421		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000354520	ENST00000317233		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
In-frame	ENST00000354520	ENST00000409579		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
5CDS-intron	ENST00000354520	ENST00000483600		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
intron-3CDS	ENST00000420751	ENST00000409236		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
intron-3CDS	ENST00000420751	ENST00000356421		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
intron-3CDS	ENST00000420751	ENST00000317233		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
intron-3CDS	ENST00000420751	ENST00000409579		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
intron-intron	ENST00000420751	ENST00000483600		ChiTaRS3.1			AF422798	KMT2A	chr11	118353211	+	AFF3	chr2	100368765	-
5UTR-3CDS	ENST00000355831	ENST00000188790		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000355831	ENST00000443424		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-intron	ENST00000355831	ENST00000493182		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000343439	ENST00000188790		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000343439	ENST00000443424		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-intron	ENST00000343439	ENST00000493182		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000392782	ENST00000188790		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000392782	ENST00000443424		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-intron	ENST00000392782	ENST00000493182		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000392783	ENST00000188790		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000392783	ENST00000443424		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-intron	ENST00000392783	ENST00000493182		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000483316	ENST00000188790		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-3CDS	ENST00000483316	ENST00000443424		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
5UTR-intron	ENST00000483316	ENST00000493182		ChiTaRS3.1			DA795303	BAZ2B	chr2	160472753	-	FAP	chr2	163099504	-
intron-3CDS	ENST00000496484	ENST00000262544		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000336714		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377475		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377465		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000496484	ENST00000494645		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000262544		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000336714		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377475		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377465		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000253686	ENST00000494645		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000262544		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000336714		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377475		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377465		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000449354	ENST00000494645		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000262544		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000336714		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377475		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377465		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000444840	ENST00000494645		ChiTaRS3.1			AI332698	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
5CDS-3UTR	ENST00000361283	ENST00000240727		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
5CDS-intron	ENST00000361283	ENST00000601144		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
5CDS-intron	ENST00000361283	ENST00000421612		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
5CDS-intron	ENST00000361283	ENST00000600404		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
5CDS-intron	ENST00000361283	ENST00000595944		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
5CDS-intron	ENST00000361283	ENST00000594567		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-3UTR	ENST00000478022	ENST00000240727		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-intron	ENST00000478022	ENST00000601144		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-intron	ENST00000478022	ENST00000421612		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-intron	ENST00000478022	ENST00000600404		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-intron	ENST00000478022	ENST00000595944		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-intron	ENST00000478022	ENST00000594567		ChiTaRS3.1			DA094713	CHAMP1	chr13	115089446	+	ZSCAN18	chr19	58595477	-
intron-3CDS	ENST00000331925	ENST00000414441		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000331925	ENST00000310512		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000573283	ENST00000414441		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000573283	ENST00000310512		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000575842	ENST00000414441		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000575842	ENST00000310512		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000575087	ENST00000414441		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
intron-3CDS	ENST00000575087	ENST00000310512		ChiTaRS3.1			BI061732	ACTG1	chr17	79479018	-	MEPCE	chr7	100030966	+
3UTR-intron	ENST00000372969	ENST00000372969		ChiTaRS3.1			BP366475	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372969	ENST00000372967		ChiTaRS3.1			BP366475	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372967	ENST00000372969		ChiTaRS3.1			BP366475	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372967	ENST00000372967		ChiTaRS3.1			BP366475	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-3CDS	ENST00000270792	ENST00000335895		ChiTaRS3.1			BF983793	SH3BGRL3	chr1	26607638	+	BTF3	chr5	72798796	+
3UTR-3UTR	ENST00000270792	ENST00000514505		ChiTaRS3.1			BF983793	SH3BGRL3	chr1	26607638	+	BTF3	chr5	72798796	+
3UTR-3UTR	ENST00000270792	ENST00000380591		ChiTaRS3.1			BF983793	SH3BGRL3	chr1	26607638	+	BTF3	chr5	72798796	+
3UTR-3CDS	ENST00000319041	ENST00000335895		ChiTaRS3.1			BF983793	SH3BGRL3	chr1	26607638	+	BTF3	chr5	72798796	+
3UTR-3UTR	ENST00000319041	ENST00000514505		ChiTaRS3.1			BF983793	SH3BGRL3	chr1	26607638	+	BTF3	chr5	72798796	+
3UTR-3UTR	ENST00000319041	ENST00000380591		ChiTaRS3.1			BF983793	SH3BGRL3	chr1	26607638	+	BTF3	chr5	72798796	+
intron-3CDS	ENST00000476233	ENST00000352456		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000595018		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000392006		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000378215		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000602130		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000593587		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000476233	ENST00000263367		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-intron	ENST00000476233	ENST00000594207		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000352456		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000595018		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000392006		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000378215		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000602130		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000593587		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000354667	ENST00000263367		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-intron	ENST00000354667	ENST00000594207		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000352456		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000595018		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000392006		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000378215		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000602130		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000593587		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-3CDS	ENST00000356674	ENST00000263367		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
intron-intron	ENST00000356674	ENST00000594207		ChiTaRS3.1			BE397591	HNRNPA2B1	chr7	26236517	-	HNRNPUL1	chr19	41810020	+
3UTR-3UTR	ENST00000292408	ENST00000534336		ChiTaRS3.1			AI292351	FGFR4	chr5	176524927	-	MALAT1	chr11	65268316	-
3UTR-3UTR	ENST00000393648	ENST00000534336		ChiTaRS3.1			AI292351	FGFR4	chr5	176524927	-	MALAT1	chr11	65268316	-
intron-3UTR	ENST00000502906	ENST00000534336		ChiTaRS3.1			AI292351	FGFR4	chr5	176524927	-	MALAT1	chr11	65268316	-
3UTR-3UTR	ENST00000292410	ENST00000534336		ChiTaRS3.1			AI292351	FGFR4	chr5	176524927	-	MALAT1	chr11	65268316	-
intron-3UTR	ENST00000507708	ENST00000534336		ChiTaRS3.1			AI292351	FGFR4	chr5	176524927	-	MALAT1	chr11	65268316	-
intron-3UTR	ENST00000393637	ENST00000534336		ChiTaRS3.1			AI292351	FGFR4	chr5	176524927	-	MALAT1	chr11	65268316	-
intron-intron	ENST00000390394	ENST00000390394		ChiTaRS3.1			AA469274	TRBV20-1	chr16	2011586	+	TRBV20-1	chr16	2011826	-
intron-3CDS	ENST00000499499	ENST00000541515		ChiTaRS3.1			DW426982	DNAJC3-AS1	chr13	96325550	-	LUC7L2	chr7	139092035	+
intron-3CDS	ENST00000400098	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000400100	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000400097	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000553597	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000390687	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000346403	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000554227	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000577565	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
intron-3CDS	ENST00000444203	ENST00000336023		ChiTaRS3.1			DA368267	SNRPN	chr15	25337026	+	TUBA1B	chr12	49525178	-
5UTR-intron	ENST00000362003	ENST00000452154		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000362003	ENST00000414788		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000362003	ENST00000430150		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000362003	ENST00000452021		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000362003	ENST00000412319		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000362003	ENST00000416841		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000362003	ENST00000509613		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000452154		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000414788		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000430150		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000452021		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000412319		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000416841		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000400151	ENST00000509613		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000452154		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000414788		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000430150		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000452021		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000412319		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000416841		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-intron	ENST00000482726	ENST00000509613		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000452154		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000414788		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000430150		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000452021		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000412319		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000416841		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000470161	ENST00000509613		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000452154		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000414788		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000430150		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000452021		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000412319		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000416841		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
5UTR-intron	ENST00000521023	ENST00000509613		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000452154		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000414788		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000430150		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000452021		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000412319		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000416841		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
intron-intron	ENST00000505655	ENST00000509613		ChiTaRS3.1			BE311607	PCGF3	chr4	699761	+	FAM156B	chrX	52985546	-
3UTR-3UTR	ENST00000263277	ENST00000220531		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000567740		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000567461		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000562384		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000566753		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000565216		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-3UTR	ENST00000263277	ENST00000568816		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000565323		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000565409		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
3UTR-intron	ENST00000263277	ENST00000564765		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-3UTR	ENST00000538399	ENST00000220531		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000567740		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000567461		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000562384		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000566753		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000565216		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-3UTR	ENST00000538399	ENST00000568816		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000565323		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000565409		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000538399	ENST00000564765		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-3UTR	ENST00000540884	ENST00000220531		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000567740		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000567461		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000562384		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000566753		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000565216		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-3UTR	ENST00000540884	ENST00000568816		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000565323		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000565409		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
intron-intron	ENST00000540884	ENST00000564765		ChiTaRS3.1			CA449248	EHD2	chr19	48245819	-	BLOC1S6	chr15	45899668	-
5CDS-intron	ENST00000335509	ENST00000551673		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5CDS-intron	ENST00000335509	ENST00000324868		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5CDS-intron	ENST00000550785	ENST00000551673		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5CDS-intron	ENST00000550785	ENST00000324868		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5CDS-intron	ENST00000541517	ENST00000551673		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5CDS-intron	ENST00000541517	ENST00000324868		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5UTR-intron	ENST00000392569	ENST00000551673		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
5UTR-intron	ENST00000392569	ENST00000324868		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
intron-intron	ENST00000546787	ENST00000551673		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
intron-intron	ENST00000546787	ENST00000324868		ChiTaRS3.1			AA663785	TPCN1	chr12	113698239	+	YARS2	chr12	32908278	-
intron-intron	ENST00000372491	ENST00000298310		ChiTaRS3.1			DA812510	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000382135		ChiTaRS3.1			DA812510	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000545773		ChiTaRS3.1			DA812510	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000556925		ChiTaRS3.1			DA812510	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000546046		ChiTaRS3.1			DA812510	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000372491	ENST00000556672		ChiTaRS3.1			DA812510	IER5L	chr9	131940108	-	NEMF	chr14	50088318	+
intron-intron	ENST00000349155	ENST00000252242		ChiTaRS3.1			AI675631	TBX3	chr12	115108355	+	KRT5	chr12	52911682	+
intron-intron	ENST00000257566	ENST00000252242		ChiTaRS3.1			AI675631	TBX3	chr12	115108355	+	KRT5	chr12	52911682	+
intron-3CDS	ENST00000322723	ENST00000356401		ChiTaRS3.1			AK001800	NCL	chr2	232326274	-	ARIH2	chr3	48965029	+
intron-3CDS	ENST00000322723	ENST00000449376		ChiTaRS3.1			AK001800	NCL	chr2	232326274	-	ARIH2	chr3	48965029	+
intron-intron	ENST00000322723	ENST00000490095		ChiTaRS3.1			AK001800	NCL	chr2	232326274	-	ARIH2	chr3	48965029	+
intron-3CDS	ENST00000358763	ENST00000359595		ChiTaRS3.1			EB387648	SYN3	chr22	33255503	+	HAPLN3	chr15	89422496	-
intron-3CDS	ENST00000358763	ENST00000562889		ChiTaRS3.1			EB387648	SYN3	chr22	33255503	+	HAPLN3	chr15	89422496	-
intron-3CDS	ENST00000332840	ENST00000359595		ChiTaRS3.1			EB387648	SYN3	chr22	33255503	+	HAPLN3	chr15	89422496	-
intron-3CDS	ENST00000332840	ENST00000562889		ChiTaRS3.1			EB387648	SYN3	chr22	33255503	+	HAPLN3	chr15	89422496	-
intron-3CDS	ENST00000467095	ENST00000359595		ChiTaRS3.1			EB387648	SYN3	chr22	33255503	+	HAPLN3	chr15	89422496	-
intron-3CDS	ENST00000467095	ENST00000562889		ChiTaRS3.1			EB387648	SYN3	chr22	33255503	+	HAPLN3	chr15	89422496	-
intron-3UTR	ENST00000311862	ENST00000360319		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-3UTR	ENST00000311862	ENST00000422373		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000311862	ENST00000369850		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000311862	ENST00000369856		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000311862	ENST00000344736		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000311862	ENST00000498491		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-3UTR	ENST00000533605	ENST00000360319		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-3UTR	ENST00000533605	ENST00000422373		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000533605	ENST00000369850		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000533605	ENST00000369856		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000533605	ENST00000344736		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000533605	ENST00000498491		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-3UTR	ENST00000525955	ENST00000360319		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-3UTR	ENST00000525955	ENST00000422373		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000525955	ENST00000369850		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000525955	ENST00000369856		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000525955	ENST00000344736		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
intron-intron	ENST00000525955	ENST00000498491		ChiTaRS3.1			BC003163	PRG2	chr11	57175155	-	FLNA	chrX	153576957	-
3UTR-5UTR	ENST00000532456	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
3UTR-5UTR	ENST00000532456	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
3UTR-5UTR	ENST00000532456	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
3UTR-5UTR	ENST00000532456	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
3UTR-intron	ENST00000532456	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
intron-5UTR	ENST00000539648	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
intron-5UTR	ENST00000539648	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
intron-5UTR	ENST00000539648	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
intron-5UTR	ENST00000539648	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
intron-intron	ENST00000539648	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000528499	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000528499	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000528499	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000528499	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-intron	ENST00000528499	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000263574	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000263574	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000263574	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000263574	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-intron	ENST00000263574	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000345598	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000345598	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000345598	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000345598	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-intron	ENST00000345598	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000338167	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000338167	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000338167	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000338167	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-intron	ENST00000338167	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000278756	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000278756	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000278756	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000278756	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-intron	ENST00000278756	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000543137	ENST00000402746		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000543137	ENST00000399654		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000543137	ENST00000406869		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-5UTR	ENST00000543137	ENST00000265854		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
5CDS-intron	ENST00000543137	ENST00000486340		ChiTaRS3.1			BP359675	APLP2	chr11	129980509	+	MAD1L1	chr7	2272554	-
intron-5UTR	ENST00000517417	ENST00000535042		ChiTaRS3.1			AF135156	PCDHGA1	chr5	140788962	+	TMEM258	chr11	61558028	-
intron-5UTR	ENST00000517417	ENST00000537328		ChiTaRS3.1			AF135156	PCDHGA1	chr5	140788962	+	TMEM258	chr11	61558028	-
intron-5UTR	ENST00000517417	ENST00000543510		ChiTaRS3.1			AF135156	PCDHGA1	chr5	140788962	+	TMEM258	chr11	61558028	-
intron-5UTR	ENST00000378105	ENST00000535042		ChiTaRS3.1			AF135156	PCDHGA1	chr5	140788962	+	TMEM258	chr11	61558028	-
intron-5UTR	ENST00000378105	ENST00000537328		ChiTaRS3.1			AF135156	PCDHGA1	chr5	140788962	+	TMEM258	chr11	61558028	-
intron-5UTR	ENST00000378105	ENST00000543510		ChiTaRS3.1			AF135156	PCDHGA1	chr5	140788962	+	TMEM258	chr11	61558028	-
intron-3UTR	ENST00000567020	ENST00000392313		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-3UTR	ENST00000567020	ENST00000262815		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-intron	ENST00000567020	ENST00000586189		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-3UTR	ENST00000293970	ENST00000392313		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-3UTR	ENST00000293970	ENST00000262815		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-intron	ENST00000293970	ENST00000586189		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-3UTR	ENST00000434757	ENST00000392313		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-3UTR	ENST00000434757	ENST00000262815		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
intron-intron	ENST00000434757	ENST00000586189		ChiTaRS3.1			AI824289	TBC1D24	chr16	2570151	-	MAU2	chr19	19468053	-
3UTR-5UTR	ENST00000249064	ENST00000261714		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
3UTR-intron	ENST00000249064	ENST00000394819		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
3UTR-intron	ENST00000249064	ENST00000582669		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-5UTR	ENST00000448492	ENST00000261714		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-intron	ENST00000448492	ENST00000394819		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-intron	ENST00000448492	ENST00000582669		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-5UTR	ENST00000421503	ENST00000261714		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-intron	ENST00000421503	ENST00000394819		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-intron	ENST00000421503	ENST00000582669		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-5UTR	ENST00000443309	ENST00000261714		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-intron	ENST00000443309	ENST00000394819		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
intron-intron	ENST00000443309	ENST00000582669		ChiTaRS3.1			BC004486	CCDC117	chr22	29183164	+	BLMH	chr17	28618999	-
3UTR-intron	ENST00000400098	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400098	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400098	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400098	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400098	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400098	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400100	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400100	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400100	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400100	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400100	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400097	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400097	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400097	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000400097	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000400097	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-3UTR	ENST00000553597	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-3UTR	ENST00000553597	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-3UTR	ENST00000553597	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-3UTR	ENST00000553597	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-intron	ENST00000553597	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000390687	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000390687	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000390687	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000390687	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000390687	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000346403	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000346403	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000346403	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000346403	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000346403	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000554227	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000554227	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000554227	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000554227	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000554227	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000577565	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000577565	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000577565	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000577565	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000577565	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000317133		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000375741		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000375739		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000444203	ENST00000370623		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000544132		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000444203	ENST00000218789		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000444203	ENST00000375736		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-3UTR	ENST00000444203	ENST00000426073		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000375737		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000375723		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000478679		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
3UTR-intron	ENST00000444203	ENST00000483189		ChiTaRS3.1			AI675348	SNRPN	chr15	25223627	-	ARHGEF7	chr13	111957250	-
intron-3CDS	ENST00000409134	ENST00000373116		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-5UTR	ENST00000409134	ENST00000488606		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-3CDS	ENST00000447989	ENST00000373116		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-5UTR	ENST00000447989	ENST00000488606		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-3CDS	ENST00000553117	ENST00000373116		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-5UTR	ENST00000553117	ENST00000488606		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-3CDS	ENST00000413020	ENST00000373116		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
intron-5UTR	ENST00000413020	ENST00000488606		ChiTaRS3.1			BQ649564	ALDH7A1	chr5	125918562	-	MRPS15	chr1	36921447	-
3UTR-3UTR	ENST00000395468	ENST00000341162		ChiTaRS3.1			AK025580	MAPK1IP1L	chr14	55532489	+	FCF1	chr14	75203075	+
3UTR-intron	ENST00000395468	ENST00000534938		ChiTaRS3.1			AK025580	MAPK1IP1L	chr14	55532489	+	FCF1	chr14	75203075	+
3UTR-intron	ENST00000395468	ENST00000553615		ChiTaRS3.1			AK025580	MAPK1IP1L	chr14	55532489	+	FCF1	chr14	75203075	+
intron-3UTR	ENST00000554364	ENST00000341162		ChiTaRS3.1			AK025580	MAPK1IP1L	chr14	55532489	+	FCF1	chr14	75203075	+
intron-intron	ENST00000554364	ENST00000534938		ChiTaRS3.1			AK025580	MAPK1IP1L	chr14	55532489	+	FCF1	chr14	75203075	+
intron-intron	ENST00000554364	ENST00000553615		ChiTaRS3.1			AK025580	MAPK1IP1L	chr14	55532489	+	FCF1	chr14	75203075	+
5CDS-intron	ENST00000306085	ENST00000598441		ChiTaRS3.1			AX747810	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
5CDS-intron	ENST00000306085	ENST00000221448		ChiTaRS3.1			AX747810	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
intron-intron	ENST00000487252	ENST00000598441		ChiTaRS3.1			AX747810	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
intron-intron	ENST00000487252	ENST00000221448		ChiTaRS3.1			AX747810	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
intron-3CDS	ENST00000407599	ENST00000263593		ChiTaRS3.1			BF885412	GAGE10	chrX	49192792	+	SIAE	chr11	124506998	-
intron-3CDS	ENST00000407599	ENST00000545756		ChiTaRS3.1			BF885412	GAGE10	chrX	49192792	+	SIAE	chr11	124506998	-
intron-intron	ENST00000407599	ENST00000525730		ChiTaRS3.1			BF885412	GAGE10	chrX	49192792	+	SIAE	chr11	124506998	-
intron-3CDS	ENST00000231061	ENST00000421182		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000231061	ENST00000357867		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000231061	ENST00000323926		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000231061	ENST00000336916		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000231061	ENST00000354785		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000357009		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000346544		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000345488		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000359671		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000446046		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000443816		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000432072		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000231061	ENST00000356005		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-intron	ENST00000231061	ENST00000490833		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-intron	ENST00000231061	ENST00000426059		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000537849	ENST00000421182		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000537849	ENST00000357867		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000537849	ENST00000323926		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000537849	ENST00000336916		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000537849	ENST00000354785		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000357009		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000346544		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000345488		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000359671		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000446046		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000443816		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000432072		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3UTR	ENST00000537849	ENST00000356005		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-intron	ENST00000537849	ENST00000490833		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-intron	ENST00000537849	ENST00000426059		ChiTaRS3.1			W48576	SPARC	chr5	151042969	-	FN1	chr2	216226765	-
intron-3CDS	ENST00000372022	ENST00000237014		ChiTaRS3.1			AW955743	SURF6	chr9	136198381	-	TTR	chr18	29178568	+
intron-3CDS	ENST00000468290	ENST00000237014		ChiTaRS3.1			AW955743	SURF6	chr9	136198381	-	TTR	chr18	29178568	+
5CDS-5UTR	ENST00000380358	ENST00000447750		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
5CDS-intron	ENST00000380358	ENST00000465640		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
intron-5UTR	ENST00000358181	ENST00000447750		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
intron-intron	ENST00000358181	ENST00000465640		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
intron-5UTR	ENST00000330494	ENST00000447750		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
intron-intron	ENST00000330494	ENST00000465640		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
intron-5UTR	ENST00000570758	ENST00000447750		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
intron-intron	ENST00000570758	ENST00000465640		ChiTaRS3.1			DA685931	CHD3	chr17	7788331	+	GDI1	chrX	153665521	+
5CDS-intron	ENST00000398665	ENST00000384994		ChiTaRS3.1			BE772409	DOT1L	chr19	2225432	+	NEAT1	chr11	65191174	+
intron-intron	ENST00000608122	ENST00000384994		ChiTaRS3.1			BE772409	DOT1L	chr19	2225432	+	NEAT1	chr11	65191174	+
5CDS-intron	ENST00000588268	ENST00000558879		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000588268	ENST00000301981		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000588268	ENST00000422500		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-3UTR	ENST00000588268	ENST00000442993		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-3UTR	ENST00000588268	ENST00000447360		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000588268	ENST00000331450		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000588268	ENST00000559399		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000360357	ENST00000558879		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000360357	ENST00000301981		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000360357	ENST00000422500		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-3UTR	ENST00000360357	ENST00000442993		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-3UTR	ENST00000360357	ENST00000447360		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000360357	ENST00000331450		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
5CDS-intron	ENST00000360357	ENST00000559399		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-intron	ENST00000540605	ENST00000558879		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-intron	ENST00000540605	ENST00000301981		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-intron	ENST00000540605	ENST00000422500		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-3UTR	ENST00000540605	ENST00000442993		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-3UTR	ENST00000540605	ENST00000447360		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-intron	ENST00000540605	ENST00000331450		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
intron-intron	ENST00000540605	ENST00000559399		ChiTaRS3.1			BU664229	ZNF461	chr19	37147350	-	LRRC28	chr15	99892570	+
3UTR-3CDS	ENST00000314332	ENST00000375807		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000314332	ENST00000339901		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-3CDS	ENST00000314332	ENST00000534113		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
3UTR-intron	ENST00000314332	ENST00000470305		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000396984	ENST00000375807		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000396984	ENST00000339901		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-3CDS	ENST00000396984	ENST00000534113		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
intron-intron	ENST00000396984	ENST00000470305		ChiTaRS3.1			BC038854	HIST1H2BC	chr6	26123741	-	SECISBP2	chr9	91972326	+
5CDS-intron	ENST00000389857	ENST00000355797		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000375036		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000449428		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000592148		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000585519		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000588114		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
5CDS-3UTR	ENST00000389857	ENST00000589082		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000331194	ENST00000355797		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000375036		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000449428		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000592148		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000585519		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000588114		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000331194	ENST00000589082		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000389856	ENST00000355797		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000375036		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000449428		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000592148		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000585519		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000588114		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000389856	ENST00000589082		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000553403	ENST00000355797		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000375036		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000449428		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000592148		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000585519		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000588114		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000553403	ENST00000589082		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-intron	ENST00000554165	ENST00000355797		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000375036		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000449428		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000592148		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000585519		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000588114		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-3UTR	ENST00000554165	ENST00000589082		ChiTaRS3.1			BG211337	CCDC88C	chr14	91809943	-	MXRA7	chr17	74676964	-
intron-5UTR	ENST00000448662	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000448662	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000448662	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000431808	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000431808	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000431808	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000284776	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000284776	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000284776	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000437304	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000437304	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000437304	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000319471	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000319471	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000319471	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000449407	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000449407	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000449407	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000355634	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000355634	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000355634	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000393528	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000393528	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000393528	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000418609	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000418609	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000418609	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000498125	ENST00000529615		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-5UTR	ENST00000498125	ENST00000328697		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-intron	ENST00000498125	ENST00000317945		ChiTaRS3.1			BM721595	SORBS2	chr4	186615839	-	CCDC34	chr11	27362387	-
intron-3CDS	ENST00000231061	ENST00000525975		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000231061	ENST00000379016		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000231061	ENST00000303296		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000231061	ENST00000456517		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-intron	ENST00000231061	ENST00000534262		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000537849	ENST00000525975		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000537849	ENST00000379016		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000537849	ENST00000303296		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-3CDS	ENST00000537849	ENST00000456517		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
intron-intron	ENST00000537849	ENST00000534262		ChiTaRS3.1			CA447001	SPARC	chr5	151042404	+	HIPK3	chr11	33370799	-
5UTR-intron	ENST00000229395	ENST00000545391		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000229395	ENST00000361171		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000229395	ENST00000436593		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000229395	ENST00000535766		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-3UTR	ENST00000229395	ENST00000485886		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000546072	ENST00000545391		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000546072	ENST00000361171		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000546072	ENST00000436593		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000546072	ENST00000535766		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-3UTR	ENST00000546072	ENST00000485886		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000327214	ENST00000545391		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000327214	ENST00000361171		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000327214	ENST00000436593		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-intron	ENST00000327214	ENST00000535766		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5UTR-3UTR	ENST00000327214	ENST00000485886		ChiTaRS3.1			DA319135	FGFR1OP2	chr12	27091643	+	MVB12B	chr9	129265452	+
5CDS-5UTR	ENST00000281419	ENST00000377107		ChiTaRS3.1			DA220924	ASAP2	chr2	9491016	+	USP11	chrX	47092424	+
5CDS-5UTR	ENST00000281419	ENST00000218348		ChiTaRS3.1			DA220924	ASAP2	chr2	9491016	+	USP11	chrX	47092424	+
5CDS-5UTR	ENST00000315273	ENST00000377107		ChiTaRS3.1			DA220924	ASAP2	chr2	9491016	+	USP11	chrX	47092424	+
5CDS-5UTR	ENST00000315273	ENST00000218348		ChiTaRS3.1			DA220924	ASAP2	chr2	9491016	+	USP11	chrX	47092424	+
intron-5UTR	ENST00000491413	ENST00000377107		ChiTaRS3.1			DA220924	ASAP2	chr2	9491016	+	USP11	chrX	47092424	+
intron-5UTR	ENST00000491413	ENST00000218348		ChiTaRS3.1			DA220924	ASAP2	chr2	9491016	+	USP11	chrX	47092424	+
5UTR-3CDS	ENST00000353331	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-5UTR	ENST00000353331	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-3CDS	ENST00000531224	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-5UTR	ENST00000531224	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-3CDS	ENST00000527536	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-5UTR	ENST00000527536	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-3CDS	ENST00000530767	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-5UTR	ENST00000530767	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-3CDS	ENST00000527759	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
5UTR-5UTR	ENST00000527759	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-3CDS	ENST00000031135	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-5UTR	ENST00000031135	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-3CDS	ENST00000529917	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-5UTR	ENST00000529917	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-3CDS	ENST00000392348	ENST00000262193		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-5UTR	ENST00000392348	ENST00000462957		ChiTaRS3.1			DB153796	BCLAF1	chr6	136610851	-	PSMB1	chr6	170858205	-
intron-intron	ENST00000393445	ENST00000551109		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000393445	ENST00000352268		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-5UTR	ENST00000393445	ENST00000394313		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000393445	ENST00000338010		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000393445	ENST00000546970		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000393445	ENST00000552382		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000393445	ENST00000551771		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000258428	ENST00000551109		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000258428	ENST00000352268		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-5UTR	ENST00000258428	ENST00000394313		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000258428	ENST00000338010		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000258428	ENST00000546970		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000258428	ENST00000552382		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000258428	ENST00000551771		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000465835	ENST00000551109		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000465835	ENST00000352268		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-5UTR	ENST00000465835	ENST00000394313		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000465835	ENST00000338010		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000465835	ENST00000546970		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000465835	ENST00000552382		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
intron-intron	ENST00000465835	ENST00000551771		ChiTaRS3.1			DA465008	REV1	chr2	100093851	-	ZNF385A	chr12	54778479	-
3UTR-3CDS	ENST00000367282	ENST00000538966		ChiTaRS3.1			AI884619	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-3CDS	ENST00000367282	ENST00000361971		ChiTaRS3.1			AI884619	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-intron	ENST00000367282	ENST00000538543		ChiTaRS3.1			AI884619	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-intron	ENST00000367282	ENST00000538776		ChiTaRS3.1			AI884619	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-intron	ENST00000367282	ENST00000538282		ChiTaRS3.1			AI884619	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-3UTR	ENST00000367282	ENST00000485980		ChiTaRS3.1			AI884619	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
intron-intron	ENST00000404233	ENST00000275605		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000404233	ENST00000395471		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000404233	ENST00000459834		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000529972	ENST00000275605		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000529972	ENST00000395471		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000529972	ENST00000459834		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000525859	ENST00000275605		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000525859	ENST00000395471		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000525859	ENST00000459834		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000543287	ENST00000275605		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000543287	ENST00000395471		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-intron	ENST00000543287	ENST00000459834		ChiTaRS3.1			AW606659	HYOU1	chr11	118922647	-	PSPH	chr7	56131325	+
intron-3CDS	ENST00000252136	ENST00000388802		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000252136	ENST00000326382		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000252136	ENST00000464752		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000403707	ENST00000388802		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000403707	ENST00000326382		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000403707	ENST00000464752		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000404751	ENST00000388802		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000404751	ENST00000326382		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000404751	ENST00000464752		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000439169	ENST00000388802		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000439169	ENST00000326382		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000439169	ENST00000464752		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000492988	ENST00000388802		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3CDS	ENST00000492988	ENST00000326382		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-intron	ENST00000492988	ENST00000464752		ChiTaRS3.1			BG912150	TRMT2A	chr22	20103810	-	SRRM3	chr7	75877539	+
intron-3UTR	ENST00000597909	ENST00000506087		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000597909	ENST00000306480		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000391781	ENST00000506087		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000391781	ENST00000306480		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000600930	ENST00000506087		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000600930	ENST00000306480		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000595635	ENST00000506087		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000595635	ENST00000306480		ChiTaRS3.1			AK129992	ZNF320	chr19	53383580	-	TMEM192	chr4	166000006	-
intron-3UTR	ENST00000356239	ENST00000418919		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000356239	ENST00000258145		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000356239	ENST00000543646		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000356239	ENST00000542058		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000358100	ENST00000418919		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000358100	ENST00000258145		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000358100	ENST00000543646		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000358100	ENST00000542058		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000359028	ENST00000418919		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000359028	ENST00000258145		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000359028	ENST00000543646		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000359028	ENST00000542058		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000394564	ENST00000418919		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000394564	ENST00000258145		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000394564	ENST00000543646		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000394564	ENST00000542058		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000491695	ENST00000418919		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3UTR	ENST00000491695	ENST00000258145		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000491695	ENST00000543646		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-intron	ENST00000491695	ENST00000542058		ChiTaRS3.1			AI701812	AKAP9	chr7	91719642	+	GNS	chr12	65107650	-
intron-3CDS	ENST00000258873	ENST00000398457		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000258873	ENST00000462050		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000258873	ENST00000347800		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000258873	ENST00000398449		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000258873	ENST00000361802		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000258873	ENST00000343687		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000258873	ENST00000398437		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000258873	ENST00000340588		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3CDS	ENST00000541759	ENST00000398457		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000541759	ENST00000462050		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000541759	ENST00000347800		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000541759	ENST00000398449		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000541759	ENST00000361802		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000541759	ENST00000343687		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000541759	ENST00000398437		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000541759	ENST00000340588		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3CDS	ENST00000560817	ENST00000398457		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000560817	ENST00000462050		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000560817	ENST00000347800		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000560817	ENST00000398449		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000560817	ENST00000361802		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000560817	ENST00000343687		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000560817	ENST00000398437		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000560817	ENST00000340588		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3CDS	ENST00000558828	ENST00000398457		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000558828	ENST00000462050		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000558828	ENST00000347800		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000558828	ENST00000398449		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000558828	ENST00000361802		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3UTR	ENST00000558828	ENST00000343687		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000558828	ENST00000398437		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-intron	ENST00000558828	ENST00000340588		ChiTaRS3.1			U34919	ACSBG1	chr15	78521562	-	ABCG1	chr21	43645835	+
intron-3CDS	ENST00000459937	ENST00000302418		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-intron	ENST00000459937	ENST00000493889		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-3CDS	ENST00000424142	ENST00000302418		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-intron	ENST00000424142	ENST00000493889		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-3CDS	ENST00000393114	ENST00000302418		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-intron	ENST00000393114	ENST00000493889		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-3CDS	ENST00000430372	ENST00000302418		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-intron	ENST00000430372	ENST00000493889		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-3CDS	ENST00000483029	ENST00000302418		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-intron	ENST00000483029	ENST00000493889		ChiTaRS3.1			BE177689	C7orf49	chr7	134850933	-	KIF5B	chr10	32311948	-
intron-3UTR	ENST00000316423	ENST00000493763		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000316423	ENST00000397415		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000316423	ENST00000304734		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000316423	ENST00000424341		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000316423	ENST00000602561		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000501493	ENST00000493763		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000501493	ENST00000397415		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000501493	ENST00000304734		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000501493	ENST00000424341		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000501493	ENST00000602561		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000506179	ENST00000493763		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000506179	ENST00000397415		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000506179	ENST00000304734		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000506179	ENST00000424341		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000506179	ENST00000602561		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000507089	ENST00000493763		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000507089	ENST00000397415		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000507089	ENST00000304734		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000507089	ENST00000424341		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000507089	ENST00000602561		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000515398	ENST00000493763		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000515398	ENST00000397415		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000515398	ENST00000304734		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3UTR	ENST00000515398	ENST00000424341		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-intron	ENST00000515398	ENST00000602561		ChiTaRS3.1			AW733157	UGDH	chr4	39501397	+	RPL7L1	chr6	42854448	-
intron-3CDS	ENST00000357214	ENST00000397898		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-3CDS	ENST00000357214	ENST00000332859		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-5UTR	ENST00000357214	ENST00000479153		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-5UTR	ENST00000357214	ENST00000411651		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-intron	ENST00000357214	ENST00000397893		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-3CDS	ENST00000468598	ENST00000397898		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-3CDS	ENST00000468598	ENST00000332859		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-5UTR	ENST00000468598	ENST00000479153		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-5UTR	ENST00000468598	ENST00000411651		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
intron-intron	ENST00000468598	ENST00000397893		ChiTaRS3.1			AA743524	SFPQ	chr1	35658375	-	SUMO3	chr21	46226877	-
3UTR-intron	ENST00000534336	ENST00000330714		ChiTaRS3.1			BE763753	MALAT1	chr11	65268341	-	MX2	chr21	42737892	+
3UTR-intron	ENST00000534336	ENST00000543692		ChiTaRS3.1			BE763753	MALAT1	chr11	65268341	-	MX2	chr21	42737892	+
3UTR-intron	ENST00000534336	ENST00000496774		ChiTaRS3.1			BE763753	MALAT1	chr11	65268341	-	MX2	chr21	42737892	+
intron-3CDS	ENST00000359139	ENST00000456435		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000318967		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000435409		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000512605		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000359139	ENST00000476843		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000456435		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000318967		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000435409		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000512605		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395741	ENST00000476843		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000456435		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000318967		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000435409		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000512605		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395744	ENST00000476843		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000456435		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000318967		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000435409		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000512605		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000216061	ENST00000476843		ChiTaRS3.1			BE719285	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000319622	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000319622	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000319622	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000319622	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000319622	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000319622	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000319622	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000319622	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565184	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565184	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565184	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565184	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565184	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565184	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000565184	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000565184	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000389093	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000389093	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000389093	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000389093	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000389093	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000389093	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000389093	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000389093	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000335181	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000335181	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000335181	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000335181	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000335181	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000335181	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000335181	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000335181	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568883	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568883	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568883	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568883	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568883	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568883	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000568883	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000568883	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000449901	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000449901	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000449901	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000449901	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000449901	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000449901	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000449901	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000449901	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565154	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565154	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565154	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565154	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565154	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000565154	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000565154	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000565154	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568459	ENST00000544172		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568459	ENST00000397501		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568459	ENST00000338238		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568459	ENST00000346049		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568459	ENST00000420218		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000568459	ENST00000517339		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000568459	ENST00000519650		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-intron	ENST00000568459	ENST00000397497		ChiTaRS3.1			AA713524	PKM	chr15	72491784	+	PTK2B	chr8	27293800	-
intron-3CDS	ENST00000483195	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000483195	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000394019	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000423644	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000346834	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000359484	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000357822	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000358683	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377632	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000405201		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000404621		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000404121		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000356219		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000397355		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3CDS	ENST00000377634	ENST00000429285		ChiTaRS3.1			BC020427	SLC4A5	chr2	74590152	-	NCOR2	chr12	124826533	-
intron-3UTR	ENST00000221957	ENST00000369583		ChiTaRS3.1			AI743409	PLIN3	chr19	4838822	+	DUSP5	chr10	112270342	-
intron-intron	ENST00000221957	ENST00000468749		ChiTaRS3.1			AI743409	PLIN3	chr19	4838822	+	DUSP5	chr10	112270342	-
intron-3UTR	ENST00000592528	ENST00000369583		ChiTaRS3.1			AI743409	PLIN3	chr19	4838822	+	DUSP5	chr10	112270342	-
intron-intron	ENST00000592528	ENST00000468749		ChiTaRS3.1			AI743409	PLIN3	chr19	4838822	+	DUSP5	chr10	112270342	-
intron-3UTR	ENST00000585479	ENST00000369583		ChiTaRS3.1			AI743409	PLIN3	chr19	4838822	+	DUSP5	chr10	112270342	-
intron-intron	ENST00000585479	ENST00000468749		ChiTaRS3.1			AI743409	PLIN3	chr19	4838822	+	DUSP5	chr10	112270342	-
intron-3CDS	ENST00000372684	ENST00000540468		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000539919		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000258091		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000398422		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000537131		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372684	ENST00000538797		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3UTR	ENST00000372684	ENST00000473786		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000540468		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000539919		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000258091		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000398422		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000537131		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3CDS	ENST00000372683	ENST00000538797		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-3UTR	ENST00000372683	ENST00000473786		ChiTaRS3.1			AW410067	RIMS3	chr1	41088634	-	CCT7	chr2	73474958	+
intron-5UTR	ENST00000301923	ENST00000361906		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-5UTR	ENST00000301923	ENST00000361684		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-intron	ENST00000301923	ENST00000504337		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-5UTR	ENST00000402203	ENST00000361906		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-5UTR	ENST00000402203	ENST00000361684		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-intron	ENST00000402203	ENST00000504337		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
5CDS-5UTR	ENST00000454349	ENST00000361906		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
5CDS-5UTR	ENST00000454349	ENST00000361684		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
5CDS-intron	ENST00000454349	ENST00000504337		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
5CDS-5UTR	ENST00000335727	ENST00000361906		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
5CDS-5UTR	ENST00000335727	ENST00000361684		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
5CDS-intron	ENST00000335727	ENST00000504337		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-5UTR	ENST00000497559	ENST00000361906		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-5UTR	ENST00000497559	ENST00000361684		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-intron	ENST00000497559	ENST00000504337		ChiTaRS3.1			DA995057	TNRC6B	chr22	40574145	+	TMEM184B	chr22	38644027	-
intron-3CDS	ENST00000536719	ENST00000353703		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000536719	ENST00000479421		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000536719	ENST00000372839		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3CDS	ENST00000251968	ENST00000353703		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000251968	ENST00000479421		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000251968	ENST00000372839		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3CDS	ENST00000357193	ENST00000353703		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000357193	ENST00000479421		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000357193	ENST00000372839		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3CDS	ENST00000543087	ENST00000353703		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000543087	ENST00000479421		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3UTR	ENST00000543087	ENST00000372839		ChiTaRS3.1			BQ961579	TSG101	chr11	18512062	-	YWHAB	chr20	43530206	+
intron-3CDS	ENST00000274606	ENST00000301281		ChiTaRS3.1			BF958189	NHP2	chr5	177576712	+	UBXN6	chr19	4446629	-
intron-3CDS	ENST00000274606	ENST00000394765		ChiTaRS3.1			BF958189	NHP2	chr5	177576712	+	UBXN6	chr19	4446629	-
intron-3CDS	ENST00000314397	ENST00000301281		ChiTaRS3.1			BF958189	NHP2	chr5	177576712	+	UBXN6	chr19	4446629	-
intron-3CDS	ENST00000314397	ENST00000394765		ChiTaRS3.1			BF958189	NHP2	chr5	177576712	+	UBXN6	chr19	4446629	-
intron-intron	ENST00000367511	ENST00000367511		ChiTaRS3.1			CB152554	FAM129A	chr1	184863247	-	FAM129A	chrX	153626718	+
intron-intron	ENST00000367511	ENST00000487074		ChiTaRS3.1			CB152554	FAM129A	chr1	184863247	-	FAM129A	chrX	153626718	+
intron-intron	ENST00000487074	ENST00000367511		ChiTaRS3.1			CB152554	FAM129A	chr1	184863247	-	FAM129A	chrX	153626718	+
intron-intron	ENST00000487074	ENST00000487074		ChiTaRS3.1			CB152554	FAM129A	chr1	184863247	-	FAM129A	chrX	153626718	+
intron-intron	ENST00000337147	ENST00000441750		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000337147	ENST00000281513		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000367075	ENST00000441750		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000367075	ENST00000281513		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000392177	ENST00000441750		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000392177	ENST00000281513		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000476189	ENST00000441750		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000476189	ENST00000281513		ChiTaRS3.1			BE812183	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
In-frame	ENST00000521157	ENST00000375312		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000521157	ENST00000360383		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000521157	ENST00000356221		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000521157	ENST00000375310		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000521157	ENST00000375308		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000521157	ENST00000252457		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000521157	ENST00000252458		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
5CDS-intron	ENST00000521157	ENST00000461716		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000375312		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000360383		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000356221		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000375310		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000375308		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000252457		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000397940	ENST00000252458		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
5CDS-intron	ENST00000397940	ENST00000461716		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000375312		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000360383		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000356221		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000375310		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000375308		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000252457		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000518119	ENST00000252458		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
5CDS-intron	ENST00000518119	ENST00000461716		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000375312		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000360383		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000356221		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000375310		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000375308		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000252457		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-3CDS	ENST00000520180	ENST00000252458		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
intron-intron	ENST00000520180	ENST00000461716		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000375312		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000360383		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000356221		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000375310		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000375308		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000252457		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
In-frame	ENST00000289820	ENST00000252458		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
5CDS-intron	ENST00000289820	ENST00000461716		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000375312		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000360383		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000356221		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000375310		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000375308		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000252457		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000381530	ENST00000252458		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
5CDS-intron	ENST00000381530	ENST00000461716		ChiTaRS3.1			DA246675	NPM2	chr8	21892055	+	CDC16	chr13	115028352	+
Frame-shit	ENST00000369536	ENST00000367658		ChiTaRS3.1			BI833146	RARS2	chr6	88265125	-	HECA	chr6	139495519	+
intron-3CDS	ENST00000497828	ENST00000367658		ChiTaRS3.1			BI833146	RARS2	chr6	88265125	-	HECA	chr6	139495519	+
3UTR-3UTR	ENST00000560674	ENST00000302418		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-intron	ENST00000560674	ENST00000493889		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-3UTR	ENST00000561323	ENST00000302418		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-intron	ENST00000561323	ENST00000493889		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-3UTR	ENST00000336292	ENST00000302418		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-intron	ENST00000336292	ENST00000493889		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-3UTR	ENST00000328642	ENST00000302418		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-intron	ENST00000328642	ENST00000493889		ChiTaRS3.1			BF825715	SYNM	chr15	99675654	+	KIF5B	chr10	32300090	-
3UTR-3CDS	ENST00000360184	ENST00000375217		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000375226		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000375267		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000375254		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000375225		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000429347		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000375224		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000360184	ENST00000543981		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-intron	ENST00000360184	ENST00000467272		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-intron	ENST00000360184	ENST00000375218		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000375217		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000375226		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000375267		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000375254		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000375225		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000429347		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000375224		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-3CDS	ENST00000556791	ENST00000543981		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-intron	ENST00000556791	ENST00000467272		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
intron-intron	ENST00000556791	ENST00000375218		ChiTaRS3.1			AA563608	DYNC1H1	chr14	102517049	-	UBR4	chr1	19403263	+
3UTR-3CDS	ENST00000389032	ENST00000295897		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
3UTR-3CDS	ENST00000389032	ENST00000415165		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
3UTR-3CDS	ENST00000389032	ENST00000503124		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
3UTR-3CDS	ENST00000389032	ENST00000509063		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
3UTR-3CDS	ENST00000389032	ENST00000401494		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
3UTR-3UTR	ENST00000389032	ENST00000505649		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3CDS	ENST00000539577	ENST00000295897		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3CDS	ENST00000539577	ENST00000415165		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3CDS	ENST00000539577	ENST00000503124		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3CDS	ENST00000539577	ENST00000509063		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3CDS	ENST00000539577	ENST00000401494		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3UTR	ENST00000539577	ENST00000505649		ChiTaRS3.1			AI114516	STK38L	chr12	27476263	+	ALB	chr4	74279302	+
intron-3CDS	ENST00000396743	ENST00000368694		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000396743	ENST00000495554		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000396743	ENST00000403433		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000396743	ENST00000368690		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000396743	ENST00000368687		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-intron	ENST00000396743	ENST00000368686		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3CDS	ENST00000156084	ENST00000368694		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000156084	ENST00000495554		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000156084	ENST00000403433		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000156084	ENST00000368690		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000156084	ENST00000368687		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-intron	ENST00000156084	ENST00000368686		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3CDS	ENST00000376488	ENST00000368694		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000376488	ENST00000495554		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000376488	ENST00000403433		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000376488	ENST00000368690		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000376488	ENST00000368687		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-intron	ENST00000376488	ENST00000368686		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3CDS	ENST00000428668	ENST00000368694		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000428668	ENST00000495554		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000428668	ENST00000403433		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000428668	ENST00000368690		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000428668	ENST00000368687		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-intron	ENST00000428668	ENST00000368686		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3CDS	ENST00000484499	ENST00000368694		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000484499	ENST00000495554		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000484499	ENST00000403433		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000484499	ENST00000368690		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-3UTR	ENST00000484499	ENST00000368687		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
intron-intron	ENST00000484499	ENST00000368686		ChiTaRS3.1			BQ687057	OTUD5	chrX	48814474	-	CHTOP	chr1	153617548	+
3UTR-3UTR	ENST00000401722	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000401722	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000401722	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000401722	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000401722	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000401722	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000228318	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000228318	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000228318	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000228318	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000228318	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000228318	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000188376	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000188376	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000188376	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000188376	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000188376	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000188376	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000551917	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000551917	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000551917	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000551917	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000551917	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000551917	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000552981	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000552981	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000552981	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000552981	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000552981	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000552981	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000551265	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000551265	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-intron	ENST00000551265	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000551265	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000551265	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000551265	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000547534	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000547534	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-intron	ENST00000547534	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000547534	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000547534	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
intron-3UTR	ENST00000547534	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000549338	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000549338	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000549338	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000549338	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000549338	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000549338	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000548847	ENST00000528737		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000548847	ENST00000420244		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-intron	ENST00000548847	ENST00000529985		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000548847	ENST00000361723		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000548847	ENST00000533703		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000548847	ENST00000531147		ChiTaRS3.1			BU684362	SLC25A3	chr12	98995436	-	FAM111A	chr11	58921887	-
3UTR-3UTR	ENST00000534336	ENST00000263881		ChiTaRS3.1			BF990821	MALAT1	chr11	65266835	+	MAP4K3	chr2	39477729	-
3UTR-3UTR	ENST00000534336	ENST00000437545		ChiTaRS3.1			BF990821	MALAT1	chr11	65266835	+	MAP4K3	chr2	39477729	-
3UTR-3UTR	ENST00000534336	ENST00000341681		ChiTaRS3.1			BF990821	MALAT1	chr11	65266835	+	MAP4K3	chr2	39477729	-
3UTR-intron	ENST00000534336	ENST00000484274		ChiTaRS3.1			BF990821	MALAT1	chr11	65266835	+	MAP4K3	chr2	39477729	-
3UTR-3UTR	ENST00000534336	ENST00000536018		ChiTaRS3.1			BF990821	MALAT1	chr11	65266835	+	MAP4K3	chr2	39477729	-
3UTR-intron	ENST00000534336	ENST00000474502		ChiTaRS3.1			BF990821	MALAT1	chr11	65266835	+	MAP4K3	chr2	39477729	-
intron-3UTR	ENST00000555577	ENST00000551018		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000555577	ENST00000351500		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000555577	ENST00000550846		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000555577	ENST00000334478		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000370649	ENST00000551018		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000370649	ENST00000351500		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000370649	ENST00000550846		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-3UTR	ENST00000370649	ENST00000334478		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
3UTR-3UTR	ENST00000370631	ENST00000551018		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
3UTR-3UTR	ENST00000370631	ENST00000351500		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
3UTR-3UTR	ENST00000370631	ENST00000550846		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
3UTR-3UTR	ENST00000370631	ENST00000334478		ChiTaRS3.1			CA307215	PI4K2A	chr10	99435289	-	PFDN5	chr12	53693162	-
intron-5UTR	ENST00000292246	ENST00000309007		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000292246	ENST00000292385		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000292246	ENST00000393565		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000292246	ENST00000393563		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000292246	ENST00000512501		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-5UTR	ENST00000350459	ENST00000309007		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000350459	ENST00000292385		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000350459	ENST00000393565		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000350459	ENST00000393563		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000350459	ENST00000512501		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-5UTR	ENST00000396091	ENST00000309007		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000396091	ENST00000292385		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000396091	ENST00000393565		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000396091	ENST00000393563		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000396091	ENST00000512501		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-5UTR	ENST00000414522	ENST00000309007		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000414522	ENST00000292385		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000414522	ENST00000393565		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000414522	ENST00000393563		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000414522	ENST00000512501		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-5UTR	ENST00000451430	ENST00000309007		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000451430	ENST00000292385		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000451430	ENST00000393565		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000451430	ENST00000393563		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000451430	ENST00000512501		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-5UTR	ENST00000495772	ENST00000309007		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000495772	ENST00000292385		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000495772	ENST00000393565		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000495772	ENST00000393563		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-intron	ENST00000495772	ENST00000512501		ChiTaRS3.1			DA734990	ANO10	chr3	43642014	-	DBN1	chr5	176900637	-
intron-3UTR	ENST00000376902	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376902	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000376902	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376902	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000533330	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000533330	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000533330	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000533330	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376917	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376917	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000376917	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376917	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376888	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376888	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000376888	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376888	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376894	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376894	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000376894	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376894	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000396704	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000396704	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000396704	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000396704	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000416766	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000416766	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000416766	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000416766	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000483013	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000483013	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000483013	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000483013	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000490427	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000490427	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000490427	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000490427	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000494692	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000494692	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000494692	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000494692	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376898	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376898	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000376898	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376898	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000396701	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000396701	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000396701	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000396701	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376891	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376891	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000376891	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000376891	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000431798	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000431798	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000431798	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000431798	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000469603	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000469603	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000469603	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000469603	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548017	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548017	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000548017	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548017	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547913	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547913	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000547913	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547913	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551392	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551392	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000551392	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551392	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000417019	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000417019	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000417019	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000417019	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551072	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551072	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000551072	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551072	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000449096	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000449096	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000449096	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000449096	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000439634	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000439634	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000439634	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000439634	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000418693	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000418693	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000418693	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000418693	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000415546	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000415546	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000415546	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000415546	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000420045	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000420045	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000420045	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000420045	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000430351	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000430351	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000430351	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000430351	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000477504	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000477504	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000477504	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000477504	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552956	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552956	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000552956	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552956	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550849	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550849	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000550849	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550849	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549492	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549492	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000549492	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549492	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552906	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552906	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000552906	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552906	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383525	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383525	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000383525	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383525	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000439884	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000439884	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000439884	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000439884	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383521	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383521	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000383521	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383521	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400669	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400669	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000400669	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400669	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400671	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400671	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000400671	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400671	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000412760	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000412760	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000412760	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000412760	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000444952	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000444952	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000444952	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000444952	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000494392	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000494392	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000494392	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000494392	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551175	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551175	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000551175	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551175	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548042	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548042	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000548042	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548042	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550349	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550349	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000550349	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550349	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000432271	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000432271	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000432271	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000432271	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549339	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549339	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000549339	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549339	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000425145	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000425145	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000425145	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000425145	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000430264	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000430264	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000430264	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000430264	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000427061	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000427061	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000427061	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000427061	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000414889	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000414889	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000414889	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000414889	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000434177	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000434177	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000434177	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000434177	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000452233	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000452233	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000452233	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000452233	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000497074	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000497074	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000497074	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000497074	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000452744	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000452744	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000452744	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000452744	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550605	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550605	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000550605	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550605	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000546555	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000546555	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000546555	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000546555	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550041	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550041	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000550041	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000550041	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000429153	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000429153	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000429153	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000429153	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000450634	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000450634	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000450634	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000450634	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400668	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400668	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000400668	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400668	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000453271	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000453271	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000453271	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000453271	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000411455	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000411455	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000411455	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000411455	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000459677	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000459677	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000459677	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000459677	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000497130	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000497130	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000497130	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000497130	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547083	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547083	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000547083	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547083	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548951	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548951	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000548951	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548951	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549967	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549967	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000549967	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000549967	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383630	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383630	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000383630	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383630	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552767	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552767	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000552767	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000552767	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000259891	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000259891	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000259891	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000259891	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000415631	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000415631	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000415631	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000415631	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000359539	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000359539	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000359539	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000359539	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000442444	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000442444	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000442444	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000442444	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400688	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400688	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000400688	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000400688	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383631	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383631	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000383631	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000383631	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000484234	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000484234	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000484234	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000484234	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547293	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547293	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000547293	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000547293	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551993	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551993	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000551993	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551993	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548521	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548521	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000548521	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000548521	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000427289	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000427289	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000427289	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000427289	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551326	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551326	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000551326	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000551326	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000423895	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000423895	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000423895	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000423895	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000457626	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000457626	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000457626	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000457626	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000421125	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000421125	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000421125	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000421125	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000444674	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000444674	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000444674	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000444674	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000440561	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000440561	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000440561	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000440561	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000426782	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000426782	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000426782	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000426782	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000478704	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000478704	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000478704	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000478704	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000549239	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000549239	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000549239	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000549239	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000547390	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000547390	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000547390	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000547390	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000553111	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000553111	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000553111	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000553111	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000447285	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000447285	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000447285	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000447285	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000553085	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000553085	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000553085	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000553085	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000419309	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000419309	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000419309	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000419309	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000438803	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000438803	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000438803	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000438803	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000442244	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000442244	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000442244	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000442244	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000441138	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000441138	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000441138	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000441138	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000433500	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000433500	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000433500	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000433500	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000419274	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000419274	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-intron	ENST00000419274	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
5CDS-3UTR	ENST00000419274	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000483865	ENST00000269346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000483865	ENST00000529107		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000483865	ENST00000534346		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-3UTR	ENST00000483865	ENST00000441391		ChiTaRS3.1			DA071666	MOG	chr6	965631	+	TTYH2	chr17	72256502	+
intron-intron	ENST00000553116	ENST00000398842		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000553116	ENST00000398809		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000553116	ENST00000461841		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000553116	ENST00000299366		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000553116	ENST00000224721		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000553116	ENST00000398788		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000553116	ENST00000475158		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000398842		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000398809		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000461841		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000299366		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000224721		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000398788		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000360299	ENST00000475158		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000398842		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000398809		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000461841		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000299366		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000224721		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000398788		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
intron-intron	ENST00000448789	ENST00000475158		ChiTaRS3.1			AA284272	RAB5B	chr12	56374167	-	CDH23	chr10	73521531	-
Frame-shit	ENST00000380861	ENST00000429243		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
Frame-shit	ENST00000380861	ENST00000549924		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
Frame-shit	ENST00000380861	ENST00000551003		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000549068		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000549740		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000546581		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000549581		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000547368		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000379786		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000380861	ENST00000549135		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
Frame-shit	ENST00000454666	ENST00000429243		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
Frame-shit	ENST00000454666	ENST00000549924		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
Frame-shit	ENST00000454666	ENST00000551003		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000549068		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000549740		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000546581		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000549581		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000547368		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000379786		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
5CDS-intron	ENST00000454666	ENST00000549135		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-3CDS	ENST00000466248	ENST00000429243		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-3CDS	ENST00000466248	ENST00000549924		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-3CDS	ENST00000466248	ENST00000551003		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000549068		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000549740		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000546581		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000549581		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000547368		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000379786		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-intron	ENST00000466248	ENST00000549135		ChiTaRS3.1			BQ650497	WWC3	chrX	10096145	+	PRR13	chr12	53837325	+
intron-3CDS	ENST00000322723	ENST00000585331		ChiTaRS3.1			BU941755	NCL	chr2	232326569	-	PSMG2	chr18	12724568	+
intron-3CDS	ENST00000322723	ENST00000317615		ChiTaRS3.1			BU941755	NCL	chr2	232326569	-	PSMG2	chr18	12724568	+
intron-3CDS	ENST00000322723	ENST00000590217		ChiTaRS3.1			BU941755	NCL	chr2	232326569	-	PSMG2	chr18	12724568	+
intron-intron	ENST00000322723	ENST00000589405		ChiTaRS3.1			BU941755	NCL	chr2	232326569	-	PSMG2	chr18	12724568	+
5CDS-intron	ENST00000362512	ENST00000418604		ChiTaRS3.1			DA386793	RNU12	chr22	43011399	+	PLP1	chrX	103031768	+
5CDS-intron	ENST00000362512	ENST00000303958		ChiTaRS3.1			DA386793	RNU12	chr22	43011399	+	PLP1	chrX	103031768	+
5CDS-intron	ENST00000362512	ENST00000361621		ChiTaRS3.1			DA386793	RNU12	chr22	43011399	+	PLP1	chrX	103031768	+
5CDS-intron	ENST00000362512	ENST00000466486		ChiTaRS3.1			DA386793	RNU12	chr22	43011399	+	PLP1	chrX	103031768	+
intron-3CDS	ENST00000376390	ENST00000223357		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-intron	ENST00000376390	ENST00000454218		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-intron	ENST00000376390	ENST00000450684		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-3CDS	ENST00000491199	ENST00000223357		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-intron	ENST00000491199	ENST00000454218		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-intron	ENST00000491199	ENST00000450684		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-3CDS	ENST00000376386	ENST00000223357		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-intron	ENST00000376386	ENST00000454218		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
intron-intron	ENST00000376386	ENST00000450684		ChiTaRS3.1			CA436787	PRAF2	chrX	48928962	+	AEBP1	chr7	44151832	-
5CDS-3UTR	ENST00000397601	ENST00000305409		ChiTaRS3.1			AV727955	MBNL2	chr13	98043667	+	SCG2	chr2	224462068	-
5CDS-3UTR	ENST00000343600	ENST00000305409		ChiTaRS3.1			AV727955	MBNL2	chr13	98043667	+	SCG2	chr2	224462068	-
3UTR-3UTR	ENST00000345429	ENST00000305409		ChiTaRS3.1			AV727955	MBNL2	chr13	98043667	+	SCG2	chr2	224462068	-
5CDS-3UTR	ENST00000376673	ENST00000305409		ChiTaRS3.1			AV727955	MBNL2	chr13	98043667	+	SCG2	chr2	224462068	-
5CDS-3UTR	ENST00000445661	ENST00000305409		ChiTaRS3.1			AV727955	MBNL2	chr13	98043667	+	SCG2	chr2	224462068	-
intron-3CDS	ENST00000423431	ENST00000307961		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
intron-5UTR	ENST00000423431	ENST00000568588		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
intron-intron	ENST00000423431	ENST00000564517		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
In-frame	ENST00000233025	ENST00000307961		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
5CDS-5UTR	ENST00000233025	ENST00000568588		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
5CDS-intron	ENST00000233025	ENST00000564517		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
5UTR-3CDS	ENST00000602728	ENST00000307961		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
5UTR-5UTR	ENST00000602728	ENST00000568588		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
5UTR-intron	ENST00000602728	ENST00000564517		ChiTaRS3.1			BU932269	SPCS1	chr3	52740253	+	RPL4	chr15	66795784	-
5CDS-3UTR	ENST00000571816	ENST00000233813		ChiTaRS3.1			BE166199	RNF167	chr17	4848101	+	IGFBP5	chr2	217539135	-
5CDS-3UTR	ENST00000572430	ENST00000233813		ChiTaRS3.1			BE166199	RNF167	chr17	4848101	+	IGFBP5	chr2	217539135	-
5CDS-3UTR	ENST00000262482	ENST00000233813		ChiTaRS3.1			BE166199	RNF167	chr17	4848101	+	IGFBP5	chr2	217539135	-
5CDS-3UTR	ENST00000575111	ENST00000233813		ChiTaRS3.1			BE166199	RNF167	chr17	4848101	+	IGFBP5	chr2	217539135	-
5CDS-3UTR	ENST00000576229	ENST00000233813		ChiTaRS3.1			BE166199	RNF167	chr17	4848101	+	IGFBP5	chr2	217539135	-
intron-3UTR	ENST00000570492	ENST00000233813		ChiTaRS3.1			BE166199	RNF167	chr17	4848101	+	IGFBP5	chr2	217539135	-
intron-3UTR	ENST00000371222	ENST00000316157		ChiTaRS3.1			BM991652	JUN	chr1	59248382	+	LARP4B	chr10	856187	+
intron-intron	ENST00000371222	ENST00000469487		ChiTaRS3.1			BM991652	JUN	chr1	59248382	+	LARP4B	chr10	856187	+
intron-3CDS	ENST00000469223	ENST00000382009		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000469223	ENST00000237364		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000469223	ENST00000467087		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000469223	ENST00000412829		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000469223	ENST00000467011		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000469223	ENST00000465503		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-intron	ENST00000469223	ENST00000478425		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000444343	ENST00000382009		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000444343	ENST00000237364		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000444343	ENST00000467087		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000444343	ENST00000412829		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000444343	ENST00000467011		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000444343	ENST00000465503		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
5CDS-intron	ENST00000444343	ENST00000478425		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000334136	ENST00000382009		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000334136	ENST00000237364		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000334136	ENST00000467087		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000334136	ENST00000412829		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000334136	ENST00000467011		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000334136	ENST00000465503		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
5CDS-intron	ENST00000334136	ENST00000478425		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000376619	ENST00000382009		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000376619	ENST00000237364		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000376619	ENST00000467087		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000376619	ENST00000412829		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000376619	ENST00000467011		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
Frame-shit	ENST00000376619	ENST00000465503		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
5CDS-intron	ENST00000376619	ENST00000478425		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000413163	ENST00000382009		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000413163	ENST00000237364		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000413163	ENST00000467087		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000413163	ENST00000412829		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000413163	ENST00000467011		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000413163	ENST00000465503		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-intron	ENST00000413163	ENST00000478425		ChiTaRS3.1			AI366036	HDAC6	chrX	48673799	+	STIM2	chr4	27019424	+
intron-3CDS	ENST00000376062	ENST00000367627		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000376062	ENST00000352445		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000376062	ENST00000495145		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000376055	ENST00000367627		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000376055	ENST00000352445		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000376055	ENST00000495145		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000307677	ENST00000367627		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000307677	ENST00000352445		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000307677	ENST00000495145		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000420653	ENST00000367627		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-3CDS	ENST00000420653	ENST00000352445		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
intron-intron	ENST00000420653	ENST00000495145		ChiTaRS3.1			BQ878375	BCL2L1	chr20	30253124	-	TOR3A	chr1	179051374	+
3UTR-intron	ENST00000361866	ENST00000452313		ChiTaRS3.1			BQ181235	COL6A1	chr21	47424664	-	NPIPB7	chr16	28726001	-
3UTR-intron	ENST00000498614	ENST00000452313		ChiTaRS3.1			BQ181235	COL6A1	chr21	47424664	-	NPIPB7	chr16	28726001	-
intron-3CDS	ENST00000306270	ENST00000556994		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000306270	ENST00000546080		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000306270	ENST00000216774		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000306270	ENST00000555557		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-3UTR	ENST00000306270	ENST00000555535		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-3CDS	ENST00000503631	ENST00000556994		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000503631	ENST00000546080		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000503631	ENST00000216774		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000503631	ENST00000555557		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-3UTR	ENST00000503631	ENST00000555535		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-3CDS	ENST00000510291	ENST00000556994		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000510291	ENST00000546080		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000510291	ENST00000216774		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-5UTR	ENST00000510291	ENST00000555557		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
intron-3UTR	ENST00000510291	ENST00000555535		ChiTaRS3.1			BU543439	IBTK	chr6	82950512	-	SRP54	chr14	35465915	+
Frame-shit	ENST00000358598	ENST00000254066		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000358598	ENST00000394089		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000425707		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000394086		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000394081		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000358598	ENST00000420042		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000392711	ENST00000254066		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000392711	ENST00000394089		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000425707		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000394086		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000394081		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000392711	ENST00000420042		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000589228	ENST00000254066		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000589228	ENST00000394089		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000425707		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000394086		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000394081		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000589228	ENST00000420042		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000536854	ENST00000254066		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000536854	ENST00000394089		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000425707		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000394086		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000394081		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000536854	ENST00000420042		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000586397	ENST00000254066		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000586397	ENST00000394089		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000425707		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000394086		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000394081		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000586397	ENST00000420042		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000588188	ENST00000254066		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
Frame-shit	ENST00000588188	ENST00000394089		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000425707		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000394086		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000394081		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000588188	ENST00000420042		ChiTaRS3.1			EF428110	PRKAR1A	chr17	66518996	+	RARA	chr17	38504566	+
5UTR-5UTR	ENST00000244769	ENST00000394084		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-intron	ENST00000244769	ENST00000469528		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000394105		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000265956		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000394104		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000470056		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000394083		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000495955		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000244769	ENST00000297933		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-intron	ENST00000244769	ENST00000312123		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000394084		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-intron	ENST00000436367	ENST00000469528		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000394105		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000265956		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000394104		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000470056		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000394083		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000495955		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000436367	ENST00000297933		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-intron	ENST00000436367	ENST00000312123		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000394084		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-intron	ENST00000467008	ENST00000469528		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000394105		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000265956		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000394104		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000470056		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000394083		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000495955		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-5UTR	ENST00000467008	ENST00000297933		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
5UTR-intron	ENST00000467008	ENST00000312123		ChiTaRS3.1			DA221307	ATXN1	chr6	16753464	-	GAPVD1	chr9	128061167	+
intron-intron	ENST00000534358	ENST00000446906		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000534358	ENST00000377072		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000534358	ENST00000307729		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000534358	ENST00000377059		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000446906		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000377072		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000307729		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000377059		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000446906		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000377072		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000307729		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000377059		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000446906		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000377072		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000307729		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000377059		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
intron-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			DQ525423	KMT2A	chr11	118358749	+	MLLT10	chr10	21943434	+
5CDS-3UTR	ENST00000403593	ENST00000431666		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000403593	ENST00000338624		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000403593	ENST00000245615		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000403593	ENST00000391754		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000403593	ENST00000474910		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000345635	ENST00000431666		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000345635	ENST00000338624		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-3UTR	ENST00000345635	ENST00000245615		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000345635	ENST00000391754		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
5CDS-intron	ENST00000345635	ENST00000474910		ChiTaRS3.1			AV727483	SDSL	chr12	113874629	+	MBOAT7	chr19	54677335	-
intron-3CDS	ENST00000316149	ENST00000225726		ChiTaRS3.1			CD356383	NDUFAF4	chr6	97345671	-	CCDC47	chr17	61833638	-
intron-3CDS	ENST00000316149	ENST00000403162		ChiTaRS3.1			CD356383	NDUFAF4	chr6	97345671	-	CCDC47	chr17	61833638	-
intron-3CDS	ENST00000316149	ENST00000582252		ChiTaRS3.1			CD356383	NDUFAF4	chr6	97345671	-	CCDC47	chr17	61833638	-
intron-3CDS	ENST00000489477	ENST00000225726		ChiTaRS3.1			CD356383	NDUFAF4	chr6	97345671	-	CCDC47	chr17	61833638	-
intron-3CDS	ENST00000489477	ENST00000403162		ChiTaRS3.1			CD356383	NDUFAF4	chr6	97345671	-	CCDC47	chr17	61833638	-
intron-3CDS	ENST00000489477	ENST00000582252		ChiTaRS3.1			CD356383	NDUFAF4	chr6	97345671	-	CCDC47	chr17	61833638	-
In-frame	ENST00000378609	ENST00000357039		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
Frame-shit	ENST00000378609	ENST00000419564		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
Frame-shit	ENST00000378609	ENST00000520103		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
Frame-shit	ENST00000378609	ENST00000522527		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
5CDS-intron	ENST00000378609	ENST00000520203		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
intron-3CDS	ENST00000472614	ENST00000357039		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
intron-3CDS	ENST00000472614	ENST00000419564		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
intron-3CDS	ENST00000472614	ENST00000520103		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
intron-3CDS	ENST00000472614	ENST00000522527		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
intron-intron	ENST00000472614	ENST00000520203		ChiTaRS3.1			EL955244	GNB1	chr1	1716729	-	PEX2	chr8	77895920	-
5CDS-intron	ENST00000262960	ENST00000407690		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407431		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000407148		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000405938		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000262960	ENST00000496523		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407690		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407431		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000407148		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000405938		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000598800	ENST00000496523		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407690		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407431		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000407148		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000405938		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000597849	ENST00000496523		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407690		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407431		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000407148		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000405938		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
5CDS-intron	ENST00000594671	ENST00000496523		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407690		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407431		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000407148		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000405938		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
intron-intron	ENST00000601173	ENST00000496523		ChiTaRS3.1			BF978851	DPP9	chr19	4682707	-	TFIP11	chr22	26889273	+
3UTR-3CDS	ENST00000306434	ENST00000319380		ChiTaRS3.1			BG329301	MAT2A	chr2	85771514	+	UBE2O	chr17	74388123	-
3UTR-intron	ENST00000306434	ENST00000587581		ChiTaRS3.1			BG329301	MAT2A	chr2	85771514	+	UBE2O	chr17	74388123	-
intron-3CDS	ENST00000409017	ENST00000319380		ChiTaRS3.1			BG329301	MAT2A	chr2	85771514	+	UBE2O	chr17	74388123	-
intron-intron	ENST00000409017	ENST00000587581		ChiTaRS3.1			BG329301	MAT2A	chr2	85771514	+	UBE2O	chr17	74388123	-
intron-3CDS	ENST00000490878	ENST00000319380		ChiTaRS3.1			BG329301	MAT2A	chr2	85771514	+	UBE2O	chr17	74388123	-
intron-intron	ENST00000490878	ENST00000587581		ChiTaRS3.1			BG329301	MAT2A	chr2	85771514	+	UBE2O	chr17	74388123	-
3UTR-3CDS	ENST00000252699	ENST00000306376		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
3UTR-3CDS	ENST00000252699	ENST00000434744		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
3UTR-3CDS	ENST00000252699	ENST00000537818		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
3UTR-intron	ENST00000252699	ENST00000480706		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000424234	ENST00000306376		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000424234	ENST00000434744		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000424234	ENST00000537818		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-intron	ENST00000424234	ENST00000480706		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000390009	ENST00000306376		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000390009	ENST00000434744		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000390009	ENST00000537818		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-intron	ENST00000390009	ENST00000480706		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000497637	ENST00000306376		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000497637	ENST00000434744		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000497637	ENST00000537818		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-intron	ENST00000497637	ENST00000480706		ChiTaRS3.1			BU623662	ACTN4	chr19	39220652	-	ETV5	chr3	185797834	+
intron-3CDS	ENST00000553974	ENST00000254719		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-intron	ENST00000553974	ENST00000573924		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-3CDS	ENST00000555474	ENST00000254719		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-intron	ENST00000555474	ENST00000573924		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-3CDS	ENST00000216442	ENST00000254719		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-intron	ENST00000216442	ENST00000573924		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-3CDS	ENST00000555431	ENST00000254719		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-intron	ENST00000555431	ENST00000573924		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-3CDS	ENST00000554236	ENST00000254719		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-intron	ENST00000554236	ENST00000573924		ChiTaRS3.1			AI052509	ATP6V1D	chr14	67804838	+	RPA1	chr17	1782929	-
intron-3CDS	ENST00000507754	ENST00000301740		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-intron	ENST00000507754	ENST00000574593		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-3CDS	ENST00000252576	ENST00000301740		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-intron	ENST00000252576	ENST00000574593		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-3CDS	ENST00000503283	ENST00000301740		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-intron	ENST00000503283	ENST00000574593		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-3CDS	ENST00000512771	ENST00000301740		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-intron	ENST00000512771	ENST00000574593		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-3CDS	ENST00000428459	ENST00000301740		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-intron	ENST00000428459	ENST00000574593		ChiTaRS3.1			CN266633	NDUFA13	chr19	19645267	+	SRRM2	chr16	2813305	+
intron-3UTR	ENST00000338338	ENST00000372725		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338338	ENST00000372724		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338338	ENST00000287239		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000338338	ENST00000372714		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338338	ENST00000372711		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000338338	ENST00000490365		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338370	ENST00000372725		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338370	ENST00000372724		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338370	ENST00000287239		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000338370	ENST00000372714		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000338370	ENST00000372711		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000338370	ENST00000490365		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000321751	ENST00000372725		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000321751	ENST00000372724		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000321751	ENST00000287239		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000321751	ENST00000372714		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000321751	ENST00000372711		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000321751	ENST00000490365		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000378853	ENST00000372725		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000378853	ENST00000372724		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000378853	ENST00000287239		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000378853	ENST00000372714		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000378853	ENST00000372711		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000378853	ENST00000490365		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000489799	ENST00000372725		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000489799	ENST00000372724		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000489799	ENST00000287239		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000489799	ENST00000372714		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-3UTR	ENST00000489799	ENST00000372711		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
intron-intron	ENST00000489799	ENST00000490365		ChiTaRS3.1			BF669247	AURKAIP1	chr1	1309500	-	KAT6B	chr10	76791248	+
5CDS-5UTR	ENST00000425967	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000425967	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000425967	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000425967	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000397091	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397091	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397091	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397091	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000447712	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000447712	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000447712	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000447712	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000341462	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000341462	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000341462	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000341462	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000532791	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000532791	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000532791	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000532791	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000397113	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397113	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397113	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397113	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000356207	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000356207	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000356207	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000356207	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000335922	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000335922	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000335922	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000335922	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000326324	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000326324	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000326324	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000326324	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000397103	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397103	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397103	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397103	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-5UTR	ENST00000397108	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397108	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397108	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
5CDS-intron	ENST00000397108	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
intron-5UTR	ENST00000496629	ENST00000316981		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
intron-intron	ENST00000496629	ENST00000423799		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
intron-intron	ENST00000496629	ENST00000429357		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
intron-intron	ENST00000496629	ENST00000519027		ChiTaRS3.1			EF525170	FGFR1	chr8	38314872	-	PLAG1	chr8	57092074	-
intron-3CDS	ENST00000314852	ENST00000367321		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-intron	ENST00000314852	ENST00000367307		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-intron	ENST00000314852	ENST00000478643		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-3CDS	ENST00000403490	ENST00000367321		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-intron	ENST00000403490	ENST00000367307		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-intron	ENST00000403490	ENST00000478643		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-3CDS	ENST00000565349	ENST00000367321		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-intron	ENST00000565349	ENST00000367307		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
intron-intron	ENST00000565349	ENST00000478643		ChiTaRS3.1			BP339812	IMP3	chr15	75932094	-	MTHFD1L	chr6	151281493	+
5CDS-3UTR	ENST00000311672	ENST00000540080		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-3UTR	ENST00000311672	ENST00000433436		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-3UTR	ENST00000311672	ENST00000538225		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-3UTR	ENST00000311672	ENST00000345519		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-3UTR	ENST00000311672	ENST00000470744		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-3UTR	ENST00000311672	ENST00000242285		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-intron	ENST00000311672	ENST00000466396		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
5CDS-3UTR	ENST00000311672	ENST00000396603		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000540080		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000433436		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000538225		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000345519		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000470744		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000242285		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-intron	ENST00000486951	ENST00000466396		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
3UTR-3UTR	ENST00000486951	ENST00000396603		ChiTaRS3.1			BU960348	UQCRH	chr1	46769493	+	CLTA	chr9	36211952	+
Frame-shit	ENST00000266712	ENST00000307961		ChiTaRS3.1			AK290436	TMTC3	chr12	88589368	+	RPL4	chr15	66791765	-
In-frame	ENST00000266712	ENST00000568588		ChiTaRS3.1			AK290436	TMTC3	chr12	88589368	+	RPL4	chr15	66791765	-
5CDS-intron	ENST00000266712	ENST00000564517		ChiTaRS3.1			AK290436	TMTC3	chr12	88589368	+	RPL4	chr15	66791765	-
intron-intron	ENST00000283632	ENST00000535924		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000283632	ENST00000483110		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000283632	ENST00000284031		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000283632	ENST00000539042		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000283632	ENST00000426972		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000283632	ENST00000542148		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000472843	ENST00000535924		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000472843	ENST00000483110		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000472843	ENST00000284031		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000472843	ENST00000539042		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000472843	ENST00000426972		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
intron-intron	ENST00000472843	ENST00000542148		ChiTaRS3.1			CA438826	RMND5A	chr2	87820724	-	DDAH1	chr1	85961849	+
In-frame	ENST00000251595	ENST00000345366		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
5CDS-3UTR	ENST00000251595	ENST00000336844		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
5CDS-3UTR	ENST00000251595	ENST00000392886		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
5CDS-3UTR	ENST00000251595	ENST00000560142		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
In-frame	ENST00000397806	ENST00000345366		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
5CDS-3UTR	ENST00000397806	ENST00000336844		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
5CDS-3UTR	ENST00000397806	ENST00000392886		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
5CDS-3UTR	ENST00000397806	ENST00000560142		ChiTaRS3.1			DR979761	HBA2	chr16	223310	+	CSH2	chr17	61949525	-
intron-intron	ENST00000380739	ENST00000474874		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-3UTR	ENST00000380739	ENST00000377482		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000380739	ENST00000467067		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000380739	ENST00000469499		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000537185	ENST00000474874		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-3UTR	ENST00000537185	ENST00000377482		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000537185	ENST00000467067		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000537185	ENST00000469499		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000476896	ENST00000474874		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-3UTR	ENST00000476896	ENST00000377482		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000476896	ENST00000467067		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
intron-intron	ENST00000476896	ENST00000469499		ChiTaRS3.1			BU620492	SERPINB1	chr6	2833927	+	ERRFI1	chr1	8072043	+
Frame-shit	ENST00000278550	ENST00000519301		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000520407		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000523079		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000338921		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000356819		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000287845		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000341377		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000287842		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000521670		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
Frame-shit	ENST00000278550	ENST00000405005		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
5CDS-intron	ENST00000278550	ENST00000520502		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
5CDS-intron	ENST00000278550	ENST00000539990		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
5CDS-intron	ENST00000278550	ENST00000523681		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000519301		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000520407		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000523079		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000338921		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000356819		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000287845		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000341377		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000287842		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000521670		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3CDS	ENST00000533038	ENST00000405005		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-intron	ENST00000533038	ENST00000520502		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-intron	ENST00000533038	ENST00000539990		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-intron	ENST00000533038	ENST00000523681		ChiTaRS3.1			AF009227	TENM4	chr11	78565149	-	NRG1	chr8	32453345	+
intron-3UTR	ENST00000464615	ENST00000322764		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-3UTR	ENST00000464615	ENST00000449423		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-3UTR	ENST00000464615	ENST00000392910		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-intron	ENST00000464615	ENST00000477373		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-3UTR	ENST00000265758	ENST00000322764		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-3UTR	ENST00000265758	ENST00000449423		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-3UTR	ENST00000265758	ENST00000392910		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-intron	ENST00000265758	ENST00000477373		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-3UTR	ENST00000423166	ENST00000322764		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-3UTR	ENST00000423166	ENST00000449423		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-3UTR	ENST00000423166	ENST00000392910		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-intron	ENST00000423166	ENST00000477373		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-3UTR	ENST00000423497	ENST00000322764		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-3UTR	ENST00000423497	ENST00000449423		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-3UTR	ENST00000423497	ENST00000392910		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
5CDS-intron	ENST00000423497	ENST00000477373		ChiTaRS3.1			BQ188404	WBSCR22	chr7	73101361	+	ZYX	chr7	143087917	+
intron-3UTR	ENST00000371121	ENST00000393892		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371121	ENST00000472031		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371121	ENST00000591072		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371121	ENST00000592446		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000371121	ENST00000393888		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000371122	ENST00000393892		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371122	ENST00000472031		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371122	ENST00000591072		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371122	ENST00000592446		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000371122	ENST00000393888		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000371123	ENST00000393892		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371123	ENST00000472031		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371123	ENST00000591072		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000371123	ENST00000592446		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000371123	ENST00000393888		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000478420	ENST00000393892		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000478420	ENST00000472031		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000478420	ENST00000591072		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-intron	ENST00000478420	ENST00000592446		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
intron-3UTR	ENST00000478420	ENST00000393888		ChiTaRS3.1			AA719336	SMARCA1	chrX	128650434	-	CNP	chr17	40126540	+
Frame-shit	ENST00000590333	ENST00000372210		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000590333	ENST00000372211		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000590333	ENST00000372208		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000590333	ENST00000372215		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
5CDS-5UTR	ENST00000590333	ENST00000459858		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000309383	ENST00000372210		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000309383	ENST00000372211		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000309383	ENST00000372208		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000309383	ENST00000372215		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
5CDS-5UTR	ENST00000309383	ENST00000459858		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000585418	ENST00000372210		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000585418	ENST00000372211		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000585418	ENST00000372208		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
Frame-shit	ENST00000585418	ENST00000372215		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
5CDS-5UTR	ENST00000585418	ENST00000459858		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000326848	ENST00000372210		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000326848	ENST00000372211		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000326848	ENST00000372208		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000326848	ENST00000372215		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-5UTR	ENST00000326848	ENST00000459858		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000588584	ENST00000372210		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000588584	ENST00000372211		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000588584	ENST00000372208		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-3CDS	ENST00000588584	ENST00000372215		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-5UTR	ENST00000588584	ENST00000459858		ChiTaRS3.1			BF203809	BRSK1	chr19	55800890	+	UCK1	chr9	134406032	-
intron-5UTR	ENST00000468874	ENST00000319933		ChiTaRS3.1			DA619106	TMEM50B	chr21	34852145	-	C5orf30	chr5	102601608	+
intron-5UTR	ENST00000468874	ENST00000515669		ChiTaRS3.1			DA619106	TMEM50B	chr21	34852145	-	C5orf30	chr5	102601608	+
intron-5UTR	ENST00000468874	ENST00000510890		ChiTaRS3.1			DA619106	TMEM50B	chr21	34852145	-	C5orf30	chr5	102601608	+
5UTR-5UTR	ENST00000542230	ENST00000319933		ChiTaRS3.1			DA619106	TMEM50B	chr21	34852145	-	C5orf30	chr5	102601608	+
5UTR-5UTR	ENST00000542230	ENST00000515669		ChiTaRS3.1			DA619106	TMEM50B	chr21	34852145	-	C5orf30	chr5	102601608	+
5UTR-5UTR	ENST00000542230	ENST00000510890		ChiTaRS3.1			DA619106	TMEM50B	chr21	34852145	-	C5orf30	chr5	102601608	+
intron-3CDS	ENST00000293677	ENST00000355238		ChiTaRS3.1			BU151397	RAVER1	chr19	10433837	-	SYNCRIP	chr6	86328614	-
intron-3CDS	ENST00000293677	ENST00000369622		ChiTaRS3.1			BU151397	RAVER1	chr19	10433837	-	SYNCRIP	chr6	86328614	-
5CDS-5UTR	ENST00000359428	ENST00000331428		ChiTaRS3.1			BF211581	NUP214	chr9	134074402	+	XKR3	chr22	17288976	-
5CDS-5UTR	ENST00000411637	ENST00000331428		ChiTaRS3.1			BF211581	NUP214	chr9	134074402	+	XKR3	chr22	17288976	-
5CDS-5UTR	ENST00000451030	ENST00000331428		ChiTaRS3.1			BF211581	NUP214	chr9	134074402	+	XKR3	chr22	17288976	-
5CDS-5UTR	ENST00000483497	ENST00000331428		ChiTaRS3.1			BF211581	NUP214	chr9	134074402	+	XKR3	chr22	17288976	-
intron-5UTR	ENST00000465486	ENST00000331428		ChiTaRS3.1			BF211581	NUP214	chr9	134074402	+	XKR3	chr22	17288976	-
intron-intron	ENST00000390548	ENST00000534993		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000543805		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000397071		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000335125		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000558753		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000537912		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000545240		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000390548	ENST00000382755		ChiTaRS3.1			AW798287	IGHG1	chr22	23243484	+	DHRS4L2	chr14	24470635	+
intron-intron	ENST00000297591	ENST00000330266		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000405975		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000415080		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000405006		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000485353		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000402360		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000404790		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000297591	ENST00000403856		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000330266		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000405975		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000415080		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000405006		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000485353		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000402360		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000404790		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000437199	ENST00000403856		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000330266		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000405975		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000415080		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000405006		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000485353		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000402360		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000404790		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000421249	ENST00000403856		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000330266		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000405975		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000415080		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000405006		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000485353		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000402360		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000404790		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
intron-intron	ENST00000523405	ENST00000403856		ChiTaRS3.1			BE927708	KIAA1429	chr8	95508668	-	THADA	chr2	43490074	-
5CDS-intron	ENST00000574322	ENST00000375587		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000574322	ENST00000375579		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000574322	ENST00000375576		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000573600	ENST00000375587		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000573600	ENST00000375579		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000573600	ENST00000375576		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000318988	ENST00000375587		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000318988	ENST00000375579		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000318988	ENST00000375576		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000572043	ENST00000375587		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000572043	ENST00000375579		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
5CDS-intron	ENST00000572043	ENST00000375576		ChiTaRS3.1			BG945796	CTDNEP1	chr17	7149345	-	CENPP	chr9	95129776	+
intron-3UTR	ENST00000174618	ENST00000439590		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000174618	ENST00000311111		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000174618	ENST00000584577		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-intron	ENST00000174618	ENST00000534490		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000174618	ENST00000533498		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575374	ENST00000439590		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575374	ENST00000311111		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575374	ENST00000584577		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-intron	ENST00000575374	ENST00000534490		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575374	ENST00000533498		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575394	ENST00000439590		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575394	ENST00000311111		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575394	ENST00000584577		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-intron	ENST00000575394	ENST00000534490		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
intron-3UTR	ENST00000575394	ENST00000533498		ChiTaRS3.1			CA313275	MNT	chr17	2287508	+	RPL38	chr17	72205995	-
5CDS-5UTR	ENST00000307098	ENST00000429829		ChiTaRS3.1			AL706186	SPRR1B	chr1	153004904	+	XIST	chrX	73065081	-
5CDS-5UTR	ENST00000392661	ENST00000429829		ChiTaRS3.1			AL706186	SPRR1B	chr1	153004904	+	XIST	chrX	73065081	-
intron-3CDS	ENST00000421351	ENST00000426263		ChiTaRS3.1			AW856224	PERP	chr6	138413330	-	SLC2A1	chr1	43394674	-
intron-intron	ENST00000421351	ENST00000475162		ChiTaRS3.1			AW856224	PERP	chr6	138413330	-	SLC2A1	chr1	43394674	-
intron-intron	ENST00000421351	ENST00000415851		ChiTaRS3.1			AW856224	PERP	chr6	138413330	-	SLC2A1	chr1	43394674	-
intron-intron	ENST00000421351	ENST00000372500		ChiTaRS3.1			AW856224	PERP	chr6	138413330	-	SLC2A1	chr1	43394674	-
intron-intron	ENST00000337198	ENST00000543729		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000337198	ENST00000368385		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000337198	ENST00000545012		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000337198	ENST00000392451		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000337198	ENST00000368383		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000337198	ENST00000368382		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000337198	ENST00000334634		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000337198	ENST00000468878		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000347770	ENST00000543729		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000347770	ENST00000368385		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000347770	ENST00000545012		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000347770	ENST00000392451		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000347770	ENST00000368383		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000347770	ENST00000368382		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000347770	ENST00000334634		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000347770	ENST00000468878		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000522311	ENST00000543729		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000522311	ENST00000368385		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000522311	ENST00000545012		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000522311	ENST00000392451		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-intron	ENST00000522311	ENST00000368383		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000522311	ENST00000368382		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000522311	ENST00000334634		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
intron-3UTR	ENST00000522311	ENST00000468878		ChiTaRS3.1			DA493026	AZIN1	chr8	103876067	-	TRIM46	chr1	155156687	+
3UTR-intron	ENST00000318008	ENST00000553781		ChiTaRS3.1			BF815794	LASP1	chr17	37076617	+	BCL2L2-PABPN1	chr14	23793796	+
3UTR-intron	ENST00000318008	ENST00000557008		ChiTaRS3.1			BF815794	LASP1	chr17	37076617	+	BCL2L2-PABPN1	chr14	23793796	+
intron-intron	ENST00000433206	ENST00000553781		ChiTaRS3.1			BF815794	LASP1	chr17	37076617	+	BCL2L2-PABPN1	chr14	23793796	+
intron-intron	ENST00000433206	ENST00000557008		ChiTaRS3.1			BF815794	LASP1	chr17	37076617	+	BCL2L2-PABPN1	chr14	23793796	+
3UTR-intron	ENST00000435347	ENST00000553781		ChiTaRS3.1			BF815794	LASP1	chr17	37076617	+	BCL2L2-PABPN1	chr14	23793796	+
3UTR-intron	ENST00000435347	ENST00000557008		ChiTaRS3.1			BF815794	LASP1	chr17	37076617	+	BCL2L2-PABPN1	chr14	23793796	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ224378	ETV6	chr12	12023073	+	RUNX1	chr21	36376489	-
3UTR-intron	ENST00000533632	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000533632	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000533632	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000533632	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000533632	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000533632	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000533632	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000528230	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000525303	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
5CDS-intron	ENST00000434101	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
3UTR-intron	ENST00000359005	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000533058	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000484457		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000538892		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000283627		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000538181		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000446237		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000507198		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
intron-intron	ENST00000526141	ENST00000542085		ChiTaRS3.1			BU178535	TRAPPC4	chr11	118894375	+	FBXL2	chr3	33430645	-
In-frame	ENST00000524717	ENST00000321949		ChiTaRS3.1			AY186998	MAML2	chr11	96074547	-	CRTC1	chr19	18853719	+
In-frame	ENST00000524717	ENST00000338797		ChiTaRS3.1			AY186998	MAML2	chr11	96074547	-	CRTC1	chr19	18853719	+
In-frame	ENST00000524717	ENST00000594658		ChiTaRS3.1			AY186998	MAML2	chr11	96074547	-	CRTC1	chr19	18853719	+
In-frame	ENST00000524717	ENST00000601916		ChiTaRS3.1			AY186998	MAML2	chr11	96074547	-	CRTC1	chr19	18853719	+
intron-3UTR	ENST00000371227	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000371249	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000306402	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000353505	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000371246	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000347291	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000393949	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000371247	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000607232	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000371245	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000361941	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000277982	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000354106	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000371239	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000371241	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-3UTR	ENST00000474353	ENST00000423278		ChiTaRS3.1			DA247415	SORBS1	chr10	97312918	-	MIAT	chr22	27053575	+
intron-intron	ENST00000397887	ENST00000379666		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000397887	ENST00000296102		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000397887	ENST00000483992		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000330938	ENST00000379666		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000330938	ENST00000296102		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000330938	ENST00000483992		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000445724	ENST00000379666		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000445724	ENST00000296102		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000445724	ENST00000483992		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000397886	ENST00000379666		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000397886	ENST00000296102		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000397886	ENST00000483992		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000494690	ENST00000379666		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000494690	ENST00000296102		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
intron-intron	ENST00000494690	ENST00000483992		ChiTaRS3.1			AJ706390	PTTG1IP	chr21	46282845	-	MRPL33	chr2	27997363	+
3UTR-3UTR	ENST00000227507	ENST00000349945		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
3UTR-3UTR	ENST00000227507	ENST00000432919		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
3UTR-3UTR	ENST00000227507	ENST00000354436		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
3UTR-intron	ENST00000227507	ENST00000567239		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
3UTR-3UTR	ENST00000227507	ENST00000393742		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
3UTR-intron	ENST00000227507	ENST00000566899		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
intron-3UTR	ENST00000536559	ENST00000349945		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
intron-3UTR	ENST00000536559	ENST00000432919		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
intron-3UTR	ENST00000536559	ENST00000354436		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
intron-intron	ENST00000536559	ENST00000567239		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
intron-3UTR	ENST00000536559	ENST00000393742		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
intron-intron	ENST00000536559	ENST00000566899		ChiTaRS3.1			BQ322337	CCND1	chr11	69467927	-	NFAT5	chr16	69737639	+
In-frame	ENST00000415083	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000542420	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000542743	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000539849	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000269137	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000545952	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
intron-3CDS	ENST00000585241	ENST00000376919		ChiTaRS3.1			AB300355	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000341394	ENST00000289968		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
Frame-shit	ENST00000341394	ENST00000441763		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000341394	ENST00000303665		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
5CDS-5UTR	ENST00000341394	ENST00000575975		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000389645	ENST00000289968		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
Frame-shit	ENST00000389645	ENST00000441763		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000389645	ENST00000303665		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
5CDS-5UTR	ENST00000389645	ENST00000575975		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000532820	ENST00000289968		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
Frame-shit	ENST00000532820	ENST00000441763		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000532820	ENST00000303665		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
5CDS-5UTR	ENST00000532820	ENST00000575975		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000530820	ENST00000289968		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
Frame-shit	ENST00000530820	ENST00000441763		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000530820	ENST00000303665		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
5CDS-5UTR	ENST00000530820	ENST00000575975		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000529307	ENST00000289968		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
Frame-shit	ENST00000529307	ENST00000441763		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
In-frame	ENST00000529307	ENST00000303665		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
5CDS-5UTR	ENST00000529307	ENST00000575975		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
intron-3CDS	ENST00000533657	ENST00000289968		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
intron-3CDS	ENST00000533657	ENST00000441763		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
intron-3CDS	ENST00000533657	ENST00000303665		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
intron-5UTR	ENST00000533657	ENST00000575975		ChiTaRS3.1			BF932122	CAPRIN1	chr11	34098172	+	ARHGAP17	chr16	24966041	-
3UTR-5UTR	ENST00000461361	ENST00000536668		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
3UTR-intron	ENST00000461361	ENST00000544994		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
3UTR-intron	ENST00000461361	ENST00000228811		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
3UTR-intron	ENST00000461361	ENST00000540107		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
5CDS-5UTR	ENST00000265564	ENST00000536668		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
5CDS-intron	ENST00000265564	ENST00000544994		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
5CDS-intron	ENST00000265564	ENST00000228811		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
5CDS-intron	ENST00000265564	ENST00000540107		ChiTaRS3.1			CK430478	EXOSC7	chr3	45043101	+	PRR4	chr12	10999912	-
intron-3CDS	ENST00000333229	ENST00000216951		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000333229	ENST00000541098		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000333229	ENST00000451957		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000342449	ENST00000216951		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000342449	ENST00000541098		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000342449	ENST00000451957		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000380800	ENST00000216951		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000380800	ENST00000541098		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000380800	ENST00000451957		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000341322	ENST00000216951		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000341322	ENST00000541098		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000341322	ENST00000451957		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000470108	ENST00000216951		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000470108	ENST00000541098		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
intron-3CDS	ENST00000470108	ENST00000451957		ChiTaRS3.1			AW373865	BRWD1	chr21	40558924	-	GSS	chr20	33516721	-
5CDS-5UTR	ENST00000439590	ENST00000374012		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000439590	ENST00000439301		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000439590	ENST00000481202		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000311111	ENST00000374012		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000311111	ENST00000439301		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000311111	ENST00000481202		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000584577	ENST00000374012		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000584577	ENST00000439301		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000584577	ENST00000481202		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000534490	ENST00000374012		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000534490	ENST00000439301		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000534490	ENST00000481202		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000533498	ENST00000374012		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000533498	ENST00000439301		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
5CDS-5UTR	ENST00000533498	ENST00000481202		ChiTaRS3.1			BP222381	RPL38	chr17	72205423	+	PHF20	chr20	34359946	+
intron-3CDS	ENST00000506722	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-3CDS	ENST00000394537	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-3CDS	ENST00000357077	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-3CDS	ENST00000264366	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-3CDS	ENST00000509550	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-3CDS	ENST00000510275	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-3CDS	ENST00000504887	ENST00000390237		ChiTaRS3.1			CA418420	ANK2	chr4	114135385	+	IGKC	chr2	89156991	+
intron-intron	ENST00000455225	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000455225	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000455225	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000455225	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000455225	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000455225	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000455225	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000455225	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000531909	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000531909	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531909	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531909	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531909	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531909	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000531909	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531909	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000528724	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000528724	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000528724	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000528724	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000528724	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000528724	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000528724	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000528724	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000531262	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000531262	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531262	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531262	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531262	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531262	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000531262	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000531262	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000532156	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000532156	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532156	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532156	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532156	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532156	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000532156	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532156	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000279968	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000279968	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000279968	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000279968	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000279968	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000279968	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000279968	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000279968	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000532407	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000532407	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532407	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532407	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532407	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532407	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000532407	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000532407	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000526175	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000526175	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000526175	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000526175	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000526175	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000526175	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000526175	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000526175	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000527766	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000527766	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527766	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527766	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527766	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527766	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000527766	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527766	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000529609	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000529609	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529609	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529609	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529609	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529609	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000529609	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529609	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000529583	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000529583	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529583	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529583	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529583	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529583	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000529583	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000529583	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000527271	ENST00000245865		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000527271	ENST00000375840		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527271	ENST00000392950		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527271	ENST00000336174		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527271	ENST00000447001		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527271	ENST00000582137		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-intron	ENST00000527271	ENST00000580039		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-5UTR	ENST00000527271	ENST00000579340		ChiTaRS3.1			AK309283	TMEM218	chr11	124967115	-	STRADA	chr17	61819159	-
intron-3CDS	ENST00000567684	ENST00000356205		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000368623		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000368621		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000310483		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-5UTR	ENST00000567684	ENST00000537590		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-5UTR	ENST00000567684	ENST00000461071		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000356205		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
Frame-shit	ENST00000326152	ENST00000368623		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000368621		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000310483		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-5UTR	ENST00000326152	ENST00000537590		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-5UTR	ENST00000326152	ENST00000461071		ChiTaRS3.1			CD109953	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-intron	ENST00000334456	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000334456	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000334456	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000334456	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000334456	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000376450	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000376450	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000376450	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000376450	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000376450	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000444035	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000444035	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000444035	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000444035	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000444035	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000544570	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000544570	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000544570	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000544570	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000544570	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000418754	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000418754	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000418754	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000418754	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000418754	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540345	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540345	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540345	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540345	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000540345	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540380	ENST00000402291		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540380	ENST00000356719		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540380	ENST00000295031		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-intron	ENST00000540380	ENST00000453873		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
intron-3UTR	ENST00000540380	ENST00000482513		ChiTaRS3.1			BE938766	PDE2A	chr11	72289973	-	KIAA1841	chr2	61315953	+
Frame-shit	ENST00000330165	ENST00000426016		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
Frame-shit	ENST00000330165	ENST00000402219		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
In-frame	ENST00000330165	ENST00000395038		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
5CDS-intron	ENST00000330165	ENST00000428721		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
5CDS-intron	ENST00000330165	ENST00000472480		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
Frame-shit	ENST00000369307	ENST00000426016		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
Frame-shit	ENST00000369307	ENST00000402219		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
In-frame	ENST00000369307	ENST00000395038		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
5CDS-intron	ENST00000369307	ENST00000428721		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
5CDS-intron	ENST00000369307	ENST00000472480		ChiTaRS3.1			DA211154	RBM8A	chr1	145508074	+	SOS1	chr2	39213173	-
3UTR-3CDS	ENST00000447654	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000447654	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000401473	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000311487	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000347617	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
5CDS-intron	ENST00000395004	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-intron	ENST00000478214	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000536378		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000231790		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000458205		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000539477		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000455445		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000435176		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000374116	ENST00000492474		ChiTaRS3.1			BC005866	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000377093	ENST00000239223		ChiTaRS3.1			AA381300	KIF1B	chr1	10359133	+	DUSP1	chr5	172197265	-
intron-3CDS	ENST00000263934	ENST00000239223		ChiTaRS3.1			AA381300	KIF1B	chr1	10359133	+	DUSP1	chr5	172197265	-
intron-3CDS	ENST00000377086	ENST00000239223		ChiTaRS3.1			AA381300	KIF1B	chr1	10359133	+	DUSP1	chr5	172197265	-
intron-3CDS	ENST00000377083	ENST00000239223		ChiTaRS3.1			AA381300	KIF1B	chr1	10359133	+	DUSP1	chr5	172197265	-
intron-3CDS	ENST00000377081	ENST00000239223		ChiTaRS3.1			AA381300	KIF1B	chr1	10359133	+	DUSP1	chr5	172197265	-
intron-3CDS	ENST00000465635	ENST00000239223		ChiTaRS3.1			AA381300	KIF1B	chr1	10359133	+	DUSP1	chr5	172197265	-
intron-3CDS	ENST00000209873	ENST00000393927		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000209873	ENST00000255616		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000394384	ENST00000393927		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000394384	ENST00000255616		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000550286	ENST00000393927		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000550286	ENST00000255616		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000549983	ENST00000393927		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-3CDS	ENST00000549983	ENST00000255616		ChiTaRS3.1			AI523835	AAAS	chr12	53701314	+	ZNF414	chr19	8576625	+
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF847841	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF847841	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF847841	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF847841	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
3UTR-intron	ENST00000242057	ENST00000340196		ChiTaRS3.1			CD244895	AHR	chr7	17384310	+	CCDC144CP	chr17	20268451	+
intron-intron	ENST00000492120	ENST00000340196		ChiTaRS3.1			CD244895	AHR	chr7	17384310	+	CCDC144CP	chr17	20268451	+
intron-intron	ENST00000513000	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000513000	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000509777	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000509777	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000262992	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000262992	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000308502	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000308502	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000508116	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000508116	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000507861	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000507861	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000506217	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000506217	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000508084	ENST00000593284		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000508084	ENST00000594367		ChiTaRS3.1			N76914	INPP4B	chr4	143307306	-	NAPA-AS1	chr19	47991547	-
intron-intron	ENST00000440491	ENST00000604938		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401010		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000339388		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000369323		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000605317		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000479926		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000604894		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401009		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604938		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401010		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000339388		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000369323		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000605317		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000479926		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604894		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401009		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604938		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401010		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000339388		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000369323		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000605317		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000479926		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604894		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401009		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604938		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401010		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000339388		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000369323		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000605317		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000479926		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604894		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401009		ChiTaRS3.1			AB042558	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-3CDS	ENST00000360476	ENST00000396056		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-intron	ENST00000360476	ENST00000399560		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-intron	ENST00000360476	ENST00000542250		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-3UTR	ENST00000360476	ENST00000296092		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-intron	ENST00000360476	ENST00000453164		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-3CDS	ENST00000394588	ENST00000396056		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-intron	ENST00000394588	ENST00000399560		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-intron	ENST00000394588	ENST00000542250		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-3UTR	ENST00000394588	ENST00000296092		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-intron	ENST00000394588	ENST00000453164		ChiTaRS3.1			CD369519	NMB	chr15	85200501	+	ZNF35	chr3	44701166	-
intron-5UTR	ENST00000450966	ENST00000251412		ChiTaRS3.1			AK295569	USP40	chr2	234398081	-	TUBG2	chr17	40811457	+
intron-5UTR	ENST00000251722	ENST00000251412		ChiTaRS3.1			AK295569	USP40	chr2	234398081	-	TUBG2	chr17	40811457	+
intron-5UTR	ENST00000427112	ENST00000251412		ChiTaRS3.1			AK295569	USP40	chr2	234398081	-	TUBG2	chr17	40811457	+
intron-5UTR	ENST00000496298	ENST00000251412		ChiTaRS3.1			AK295569	USP40	chr2	234398081	-	TUBG2	chr17	40811457	+
intron-5UTR	ENST00000409945	ENST00000251412		ChiTaRS3.1			AK295569	USP40	chr2	234398081	-	TUBG2	chr17	40811457	+
intron-5UTR	ENST00000443711	ENST00000251412		ChiTaRS3.1			AK295569	USP40	chr2	234398081	-	TUBG2	chr17	40811457	+
intron-3CDS	ENST00000338368	ENST00000543245		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000338368	ENST00000356839		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000338368	ENST00000350303		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-intron	ENST00000338368	ENST00000581562		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000314191	ENST00000543245		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000314191	ENST00000356839		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000314191	ENST00000350303		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-intron	ENST00000314191	ENST00000581562		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000523565	ENST00000543245		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000523565	ENST00000356839		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3CDS	ENST00000523565	ENST00000350303		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-intron	ENST00000523565	ENST00000581562		ChiTaRS3.1			BQ320900	PRKDC	chr8	48744744	-	ACADVL	chr17	7127688	+
intron-3UTR	ENST00000225964	ENST00000397898		ChiTaRS3.1			BU628173	COL1A1	chr17	48261999	+	SUMO3	chr21	46226255	+
intron-3UTR	ENST00000225964	ENST00000332859		ChiTaRS3.1			BU628173	COL1A1	chr17	48261999	+	SUMO3	chr21	46226255	+
intron-5UTR	ENST00000225964	ENST00000479153		ChiTaRS3.1			BU628173	COL1A1	chr17	48261999	+	SUMO3	chr21	46226255	+
intron-intron	ENST00000225964	ENST00000411651		ChiTaRS3.1			BU628173	COL1A1	chr17	48261999	+	SUMO3	chr21	46226255	+
intron-intron	ENST00000225964	ENST00000397893		ChiTaRS3.1			BU628173	COL1A1	chr17	48261999	+	SUMO3	chr21	46226255	+
Frame-shit	ENST00000356978	ENST00000005257		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
5CDS-3UTR	ENST00000356978	ENST00000468201		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
Frame-shit	ENST00000447653	ENST00000005257		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
5CDS-3UTR	ENST00000447653	ENST00000468201		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
intron-3CDS	ENST00000555132	ENST00000005257		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
intron-3UTR	ENST00000555132	ENST00000468201		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
Frame-shit	ENST00000553542	ENST00000005257		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
5CDS-3UTR	ENST00000553542	ENST00000468201		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
Frame-shit	ENST00000544280	ENST00000005257		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
5CDS-3UTR	ENST00000544280	ENST00000468201		ChiTaRS3.1			CD366766	CALM1	chr14	90870820	-	RALA	chr7	39745749	-
intron-intron	ENST00000549920	ENST00000560305		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549920	ENST00000561011		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549920	ENST00000559911		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549920	ENST00000558113		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000549920	ENST00000358005		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000549920	ENST00000416810		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549920	ENST00000558750		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549920	ENST00000558871		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549920	ENST00000560109		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000560305		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000561011		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000559911		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000558113		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000550645	ENST00000358005		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000550645	ENST00000416810		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000558750		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000558871		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000550645	ENST00000560109		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000560305		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000561011		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000559911		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000558113		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000552588	ENST00000358005		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000552588	ENST00000416810		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000558750		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000558871		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000552588	ENST00000560109		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000560305		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000561011		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000559911		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000558113		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000549273	ENST00000358005		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000549273	ENST00000416810		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000558750		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000558871		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-intron	ENST00000549273	ENST00000560109		ChiTaRS3.1			CA309686	RPL18	chr19	49119421	+	C15orf57	chr15	40845397	+
intron-3UTR	ENST00000330978	ENST00000268720		ChiTaRS3.1			DA524880	BOLA2	chr16	29824648	+	CPNE7	chr16	89663405	+
intron-3UTR	ENST00000330978	ENST00000319518		ChiTaRS3.1			DA524880	BOLA2	chr16	29824648	+	CPNE7	chr16	89663405	+
intron-intron	ENST00000330978	ENST00000566398		ChiTaRS3.1			DA524880	BOLA2	chr16	29824648	+	CPNE7	chr16	89663405	+
intron-3UTR	ENST00000397967	ENST00000377474		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000397967	ENST00000317765		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000340900	ENST00000377474		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000340900	ENST00000317765		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000412779	ENST00000377474		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000412779	ENST00000317765		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000555698	ENST00000377474		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000555698	ENST00000317765		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000397970	ENST00000377474		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3UTR	ENST00000397970	ENST00000317765		ChiTaRS3.1			DA778433	RNASE1	chr14	21269808	-	KCTD12	chr13	77458281	-
intron-3CDS	ENST00000376438	ENST00000396324		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376438	ENST00000452625		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376438	ENST00000576790		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376438	ENST00000300036		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-intron	ENST00000376438	ENST00000573908		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000304195	ENST00000396324		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000304195	ENST00000452625		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000304195	ENST00000576790		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000304195	ENST00000300036		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-intron	ENST00000304195	ENST00000573908		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000328788	ENST00000396324		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000328788	ENST00000452625		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000328788	ENST00000576790		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000328788	ENST00000300036		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-intron	ENST00000328788	ENST00000573908		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376434	ENST00000396324		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376434	ENST00000452625		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376434	ENST00000576790		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000376434	ENST00000300036		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-intron	ENST00000376434	ENST00000573908		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000465485	ENST00000396324		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000465485	ENST00000452625		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000465485	ENST00000576790		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-3CDS	ENST00000465485	ENST00000300036		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-intron	ENST00000465485	ENST00000573908		ChiTaRS3.1			AW835471	FRMD3	chr9	86094301	+	MYH11	chr16	15835419	-
intron-intron	ENST00000552491	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552491	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552491	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000547825	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000547825	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552823	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552823	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000394943	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000394943	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000341247	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000341247	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552783	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552783	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552909	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552909	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000324771		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000418800		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000454612		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000376569		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000446312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000376575		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000376570		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000376568		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000452441		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000508312		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000376567		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000513240		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000508472		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000361741		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000434428		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000483193		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000383377		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000400414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000259875		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000552721		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000553015		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000468225		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000400411		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000400410		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000412329		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000449518		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000427053		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000548962		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000548133		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000462241		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000415092		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000453510		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000550666		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000488414		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000422628		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000400492		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000400491		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000400489		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000549026		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000550395		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000490712		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000400488		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000400486		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-3UTR	ENST00000552008	ENST00000552434		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000430933		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000429699		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000421229		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000550384		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000552068		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000487780		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000454774		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000419412		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
intron-intron	ENST00000552008	ENST00000548693		ChiTaRS3.1			BG250113	LIMA1	chr12	50571695	-	DDR1	chr6	2160824	+
5CDS-intron	ENST00000389100	ENST00000414722		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
5CDS-3UTR	ENST00000389100	ENST00000435944		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
5CDS-intron	ENST00000389100	ENST00000454857		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
5CDS-3UTR	ENST00000389100	ENST00000439517		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
5CDS-intron	ENST00000389100	ENST00000426021		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
5CDS-intron	ENST00000389100	ENST00000454781		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000296615	ENST00000414722		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-3UTR	ENST00000296615	ENST00000435944		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000296615	ENST00000454857		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-3UTR	ENST00000296615	ENST00000439517		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000296615	ENST00000426021		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000296615	ENST00000454781		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000381081	ENST00000414722		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-3UTR	ENST00000381081	ENST00000435944		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000381081	ENST00000454857		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-3UTR	ENST00000381081	ENST00000439517		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000381081	ENST00000426021		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
intron-intron	ENST00000381081	ENST00000454781		ChiTaRS3.1			BM718923	RNF180	chr5	63621048	+	CASC2	chr10	119967000	+
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM742279	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM742279	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM742279	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM742279	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
3UTR-3UTR	ENST00000320954	ENST00000422945		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000556068		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000554442		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-3UTR	ENST00000320954	ENST00000328724		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-3UTR	ENST00000320954	ENST00000350249		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000445439		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-3UTR	ENST00000320954	ENST00000334743		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000557095		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000556260		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000556946		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
3UTR-intron	ENST00000320954	ENST00000557714		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000422945		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000556068		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000554442		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000328724		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000350249		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000445439		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000449224	ENST00000334743		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000557095		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000556260		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000556946		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000449224	ENST00000557714		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000422945		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000556068		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000554442		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000328724		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000350249		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000445439		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3UTR	ENST00000485310	ENST00000334743		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000557095		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000556260		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000556946		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-intron	ENST00000485310	ENST00000557714		ChiTaRS3.1			AA410800	CRTAP	chr3	33185183	+	PPP2R5C	chr14	102393190	+
intron-3CDS	ENST00000552491	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000552491	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000552491	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000547825	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000547825	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000547825	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000552823	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000552823	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000552823	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000394943	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000394943	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000394943	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000341247	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000341247	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000341247	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000552783	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000552783	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000552783	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000552909	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000552909	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000552909	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3CDS	ENST00000552008	ENST00000245680		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-5UTR	ENST00000552008	ENST00000470204		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-intron	ENST00000552008	ENST00000409342		ChiTaRS3.1			DA041521	LIMA1	chr12	50595157	-	SLC35F5	chr2	114476819	-
intron-3UTR	ENST00000263233	ENST00000442283		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000318218		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000522463		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000521420		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000347377		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000377576		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000541131		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000263233	ENST00000435847		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-intron	ENST00000263233	ENST00000520960		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000442283		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000318218		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000522463		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000521420		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000347377		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000377576		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000541131		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000538567	ENST00000435847		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-intron	ENST00000538567	ENST00000520960		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000442283		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000318218		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000522463		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000521420		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000347377		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000377576		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000541131		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-3UTR	ENST00000479808	ENST00000435847		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
intron-intron	ENST00000479808	ENST00000520960		ChiTaRS3.1			AA317589	SYP	chrX	49045445	-	CYFIP2	chr5	156816341	+
Frame-shit	ENST00000373823	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373823	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373823	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000373823	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373808	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373808	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373808	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000373808	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000436847	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000436847	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000436847	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000436847	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000449733	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000449733	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000449733	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000449733	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000412819	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000412819	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000412819	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000412819	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000394353	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000394353	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000394353	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000394353	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000341272	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000341272	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000341272	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000341272	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000545652	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000545652	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000545652	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000545652	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373818	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373818	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
Frame-shit	ENST00000373818	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
5CDS-5UTR	ENST00000373818	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000485767	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000485767	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000485767	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-5UTR	ENST00000485767	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000373807	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000373807	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000373807	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-5UTR	ENST00000373807	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000373806	ENST00000398519		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000373806	ENST00000314028		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000373806	ENST00000392334		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-5UTR	ENST00000373806	ENST00000578904		ChiTaRS3.1			BE938381	GSN	chr9	124064346	+	CSNK1D	chr17	80210975	-
intron-3CDS	ENST00000391976	ENST00000312637		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000391976	ENST00000505792		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000310931	ENST00000312637		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000310931	ENST00000505792		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000391975	ENST00000312637		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000391975	ENST00000505792		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000427183	ENST00000312637		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000427183	ENST00000505792		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000476807	ENST00000312637		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-3CDS	ENST00000476807	ENST00000505792		ChiTaRS3.1			BM833846	HDLBP	chr2	242195605	-	FAM174A	chr5	99897759	+
intron-intron	ENST00000595501	ENST00000488834		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-intron	ENST00000595501	ENST00000474597		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-3UTR	ENST00000595501	ENST00000244763		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-3UTR	ENST00000595501	ENST00000397511		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-3UTR	ENST00000595501	ENST00000534851		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-intron	ENST00000595501	ENST00000489567		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-intron	ENST00000595501	ENST00000479365		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-intron	ENST00000595501	ENST00000462112		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-intron	ENST00000355085	ENST00000488834		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-intron	ENST00000355085	ENST00000474597		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-3UTR	ENST00000355085	ENST00000244763		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-3UTR	ENST00000355085	ENST00000397511		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-3UTR	ENST00000355085	ENST00000534851		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-intron	ENST00000355085	ENST00000489567		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-intron	ENST00000355085	ENST00000479365		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
3UTR-intron	ENST00000355085	ENST00000462112		ChiTaRS3.1			BQ353656	C5AR1	chr19	47824151	+	SSR1	chr6	7288877	-
intron-intron	ENST00000340533	ENST00000369817		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000340533	ENST00000479366		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000340533	ENST00000424325		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000340533	ENST00000406022		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000369817		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000479366		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000424325		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000494131	ENST00000406022		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000369817		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000479366		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000424325		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000397914	ENST00000406022		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000369817		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000479366		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000424325		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
intron-intron	ENST00000299438	ENST00000406022		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000369817		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000479366		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000424325		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-intron	ENST00000579064	ENST00000406022		ChiTaRS3.1			CB164490	CYB5A	chr18	71920789	-	RPL10	chrX	153630762	-
5CDS-3UTR	ENST00000350028	ENST00000335350		ChiTaRS3.1			CB528606	SAMM50	chr22	44386254	-	UNC5B	chr10	73062148	-
5CDS-3UTR	ENST00000350028	ENST00000373192		ChiTaRS3.1			CB528606	SAMM50	chr22	44386254	-	UNC5B	chr10	73062148	-
intron-3UTR	ENST00000493161	ENST00000335350		ChiTaRS3.1			CB528606	SAMM50	chr22	44386254	-	UNC5B	chr10	73062148	-
intron-3UTR	ENST00000493161	ENST00000373192		ChiTaRS3.1			CB528606	SAMM50	chr22	44386254	-	UNC5B	chr10	73062148	-
5CDS-3UTR	ENST00000396202	ENST00000335350		ChiTaRS3.1			CB528606	SAMM50	chr22	44386254	-	UNC5B	chr10	73062148	-
5CDS-3UTR	ENST00000396202	ENST00000373192		ChiTaRS3.1			CB528606	SAMM50	chr22	44386254	-	UNC5B	chr10	73062148	-
intron-5UTR	ENST00000498485	ENST00000419152		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000532400		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000498485	ENST00000532741		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000498485	ENST00000317198		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000526838		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000442189		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000528610		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000423316		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000395119		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000529272		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000531621		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000524624		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000498485	ENST00000531770		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000419152		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000532400		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000259457	ENST00000532741		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000259457	ENST00000317198		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000526838		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000442189		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000528610		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000423316		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000395119		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000529272		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000531621		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000524624		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000259457	ENST00000531770		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000419152		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000532400		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000536392	ENST00000532741		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000536392	ENST00000317198		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000526838		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000442189		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000528610		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000423316		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000395119		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000529272		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000531621		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000524624		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-5UTR	ENST00000536392	ENST00000531770		ChiTaRS3.1			BQ925563	PSMB7	chr9	127119816	+	EEF1D	chr8	144679566	-
intron-intron	ENST00000538132	ENST00000452313		ChiTaRS3.1			BQ647045	AHCY	chr20	32878544	-	NPIPB7	chr16	28745873	+
intron-intron	ENST00000217426	ENST00000452313		ChiTaRS3.1			BQ647045	AHCY	chr20	32878544	-	NPIPB7	chr16	28745873	+
intron-intron	ENST00000468908	ENST00000452313		ChiTaRS3.1			BQ647045	AHCY	chr20	32878544	-	NPIPB7	chr16	28745873	+
In-frame	ENST00000415083	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000542420	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000542743	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
Frame-shit	ENST00000539849	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000269137	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
In-frame	ENST00000545952	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
intron-3CDS	ENST00000585241	ENST00000376919		ChiTaRS3.1			AB300354	SS18	chr18	23612363	-	SSX1	chrX	48123215	+
5UTR-intron	ENST00000338244	ENST00000338244		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000338244	ENST00000379333		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000338244	ENST00000424750		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000338244	ENST00000468355		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000338244		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000379333		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000424750		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000379333	ENST00000468355		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000338244		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000379333		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000424750		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000424750	ENST00000468355		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000338244		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000379333		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000424750		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
5UTR-intron	ENST00000468355	ENST00000468355		ChiTaRS3.1			CB959789	SLC23A2	chr20	4951437	-	SLC23A2	chr9	89880410	-
intron-3CDS	ENST00000355272	ENST00000435706		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000355272	ENST00000264331		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000355272	ENST00000542520		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000355272	ENST00000540199		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-intron	ENST00000355272	ENST00000475717		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000356926	ENST00000435706		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000356926	ENST00000264331		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000356926	ENST00000542520		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000356926	ENST00000540199		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-intron	ENST00000356926	ENST00000475717		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000350812	ENST00000435706		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000350812	ENST00000264331		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000350812	ENST00000542520		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000350812	ENST00000540199		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-intron	ENST00000350812	ENST00000475717		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000345016	ENST00000435706		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000345016	ENST00000264331		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000345016	ENST00000542520		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000345016	ENST00000540199		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-intron	ENST00000345016	ENST00000475717		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000590683	ENST00000435706		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000590683	ENST00000264331		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000590683	ENST00000542520		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3CDS	ENST00000590683	ENST00000540199		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-intron	ENST00000590683	ENST00000475717		ChiTaRS3.1			CB128088	AP3D1	chr19	2110867	-	TOP2B	chr3	25640955	-
intron-3UTR	ENST00000261623	ENST00000342907		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-3UTR	ENST00000261623	ENST00000393640		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-intron	ENST00000261623	ENST00000566097		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-3UTR	ENST00000567174	ENST00000342907		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-3UTR	ENST00000567174	ENST00000393640		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-intron	ENST00000567174	ENST00000566097		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
5CDS-3UTR	ENST00000569359	ENST00000342907		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
5CDS-3UTR	ENST00000569359	ENST00000393640		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
5CDS-intron	ENST00000569359	ENST00000566097		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-3UTR	ENST00000561972	ENST00000342907		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-3UTR	ENST00000561972	ENST00000393640		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
intron-intron	ENST00000561972	ENST00000566097		ChiTaRS3.1			BC048338	CYBA	chr16	88711495	-	ST3GAL2	chr16	70413581	-
5CDS-intron	ENST00000229239	ENST00000540235		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393930		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000393931		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000229239	ENST00000310706		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000540235		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393930		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000393931		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396856	ENST00000310706		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000540235		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393930		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000393931		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396861	ENST00000310706		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000540235		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393930		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000393931		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396859	ENST00000310706		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000540235		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393930		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000393931		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
5CDS-intron	ENST00000396858	ENST00000310706		ChiTaRS3.1			BQ314751	GAPDH	chr12	6646143	+	JUP	chr17	39847268	+
intron-intron	ENST00000325351	ENST00000262135		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000379925		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000563746		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000564374		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568009		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568653		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000566096		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000262135		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000379925		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000563746		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000564374		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568009		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568653		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000566096		ChiTaRS3.1			AI631545	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-5UTR	ENST00000336861	ENST00000380191		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-intron	ENST00000336861	ENST00000479928		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000336861	ENST00000380132		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000336861	ENST00000380181		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000246635	ENST00000380191		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-intron	ENST00000246635	ENST00000479928		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000246635	ENST00000380132		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000246635	ENST00000380181		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000587544	ENST00000380191		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-intron	ENST00000587544	ENST00000479928		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000587544	ENST00000380132		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000587544	ENST00000380181		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000587118	ENST00000380191		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-intron	ENST00000587118	ENST00000479928		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000587118	ENST00000380132		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-5UTR	ENST00000587118	ENST00000380181		ChiTaRS3.1			DA448093	KRT13	chr17	39661611	-	GDI2	chr10	5855378	-
intron-3CDS	ENST00000532317	ENST00000220763		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3UTR	ENST00000532317	ENST00000529551		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3CDS	ENST00000526033	ENST00000220763		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3UTR	ENST00000526033	ENST00000529551		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3CDS	ENST00000393346	ENST00000220763		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3UTR	ENST00000393346	ENST00000529551		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3CDS	ENST00000528398	ENST00000220763		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3UTR	ENST00000528398	ENST00000529551		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3CDS	ENST00000356360	ENST00000220763		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3UTR	ENST00000356360	ENST00000529551		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3CDS	ENST00000528411	ENST00000220763		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-3UTR	ENST00000528411	ENST00000529551		ChiTaRS3.1			CF125182	PICALM	chr11	85669998	-	CPQ	chr8	98078317	+
intron-intron	ENST00000343267	ENST00000335351		ChiTaRS3.1			DC323743	APOD	chr3	195300743	-	TCFL5	chr20	61486618	-
intron-intron	ENST00000343267	ENST00000217162		ChiTaRS3.1			DC323743	APOD	chr3	195300743	-	TCFL5	chr20	61486618	-
intron-3CDS	ENST00000300030	ENST00000526148		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000300030	ENST00000525681		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000300030	ENST00000339995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000300030	ENST00000396525		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-intron	ENST00000300030	ENST00000525995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000558779	ENST00000526148		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000558779	ENST00000525681		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000558779	ENST00000339995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000558779	ENST00000396525		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-intron	ENST00000558779	ENST00000525995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000380290	ENST00000526148		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000380290	ENST00000525681		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000380290	ENST00000339995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000380290	ENST00000396525		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-intron	ENST00000380290	ENST00000525995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000557835	ENST00000526148		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000557835	ENST00000525681		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000557835	ENST00000339995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000557835	ENST00000396525		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-intron	ENST00000557835	ENST00000525995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000559950	ENST00000526148		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000559950	ENST00000525681		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000559950	ENST00000339995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000559950	ENST00000396525		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-intron	ENST00000559950	ENST00000525995		ChiTaRS3.1			AU125641	FAM96A	chr15	64379996	-	EIF4G2	chr11	10822581	-
intron-3CDS	ENST00000366510	ENST00000344749		ChiTaRS3.1			AI018497	SCCPDH	chr1	246930498	-	TCF3	chr19	1611788	+
intron-3CDS	ENST00000366510	ENST00000262965		ChiTaRS3.1			AI018497	SCCPDH	chr1	246930498	-	TCF3	chr19	1611788	+
intron-3CDS	ENST00000366510	ENST00000453954		ChiTaRS3.1			AI018497	SCCPDH	chr1	246930498	-	TCF3	chr19	1611788	+
intron-3CDS	ENST00000366510	ENST00000395423		ChiTaRS3.1			AI018497	SCCPDH	chr1	246930498	-	TCF3	chr19	1611788	+
intron-3CDS	ENST00000366510	ENST00000588136		ChiTaRS3.1			AI018497	SCCPDH	chr1	246930498	-	TCF3	chr19	1611788	+
intron-3CDS	ENST00000278412	ENST00000252136		ChiTaRS3.1			BF509750	SSRP1	chr11	57095201	+	TRMT2A	chr22	20103854	+
intron-3CDS	ENST00000278412	ENST00000403707		ChiTaRS3.1			BF509750	SSRP1	chr11	57095201	+	TRMT2A	chr22	20103854	+
intron-3CDS	ENST00000278412	ENST00000404751		ChiTaRS3.1			BF509750	SSRP1	chr11	57095201	+	TRMT2A	chr22	20103854	+
intron-3CDS	ENST00000278412	ENST00000439169		ChiTaRS3.1			BF509750	SSRP1	chr11	57095201	+	TRMT2A	chr22	20103854	+
intron-intron	ENST00000278412	ENST00000492988		ChiTaRS3.1			BF509750	SSRP1	chr11	57095201	+	TRMT2A	chr22	20103854	+
5UTR-3CDS	ENST00000381602	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381602	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381602	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397962	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397962	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000309776	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000309776	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000509513	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000509513	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397959	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397959	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000381591	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000381591	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000403354	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000403354	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381607	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381607	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000402736	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000402736	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000602682	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000602682	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381604	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381604	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381584	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381584	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000558098	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000558098	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000545619	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000545619	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000535374	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000535374	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000344646		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374366		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374371		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000473115	ENST00000374370		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000473115	ENST00000335258		ChiTaRS3.1			DB500938	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000341832	ENST00000550187		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000341832	ENST00000547157		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000341832	ENST00000327772		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000341832	ENST00000547986		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000340677	ENST00000550187		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000340677	ENST00000547157		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000340677	ENST00000327772		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000340677	ENST00000547986		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000407249	ENST00000550187		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000407249	ENST00000547157		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000407249	ENST00000327772		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000407249	ENST00000547986		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000317673	ENST00000550187		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000317673	ENST00000547157		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000317673	ENST00000327772		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-intron	ENST00000317673	ENST00000547986		ChiTaRS3.1			U34343	CDK11B	chr1	1601352	-	NDUFA12	chr12	95397416	-
intron-3CDS	ENST00000453363	ENST00000328252		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-3CDS	ENST00000453363	ENST00000534838		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-intron	ENST00000453363	ENST00000483254		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-3CDS	ENST00000316193	ENST00000328252		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-3CDS	ENST00000316193	ENST00000534838		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-intron	ENST00000316193	ENST00000483254		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-3CDS	ENST00000329882	ENST00000328252		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-3CDS	ENST00000329882	ENST00000534838		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
intron-intron	ENST00000329882	ENST00000483254		ChiTaRS3.1			BQ021880	CSH1	chr17	61972321	+	PAPPA	chr9	119109467	-
Frame-shit	ENST00000418658	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000418658	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000397461	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000397461	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000427331	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000427331	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000358480	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000358480	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000397459	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000397459	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000448906	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
Frame-shit	ENST00000448906	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
intron-3CDS	ENST00000475817	ENST00000301998		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
intron-3CDS	ENST00000475817	ENST00000405767		ChiTaRS3.1			AV724042	CNTN4	chr3	3079012	+	B3GNT2	chr2	62449613	+
intron-intron	ENST00000256429	ENST00000297056		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000256429	ENST00000425398		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-5UTR	ENST00000256429	ENST00000436575		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000256429	ENST00000428902		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000256429	ENST00000421761		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000256429	ENST00000479922		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000579025	ENST00000297056		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000579025	ENST00000425398		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-5UTR	ENST00000579025	ENST00000436575		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000579025	ENST00000428902		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000579025	ENST00000421761		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000579025	ENST00000479922		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000398398	ENST00000297056		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000398398	ENST00000425398		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-5UTR	ENST00000398398	ENST00000436575		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000398398	ENST00000428902		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000398398	ENST00000421761		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000398398	ENST00000479922		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000583046	ENST00000297056		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000583046	ENST00000425398		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-5UTR	ENST00000583046	ENST00000436575		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000583046	ENST00000428902		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000583046	ENST00000421761		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
intron-intron	ENST00000583046	ENST00000479922		ChiTaRS3.1			AL560936	MBD2	chr18	51750612	-	DAGLB	chr7	6523706	-
In-frame	ENST00000535193	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000535193	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000535193	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000535193	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000535193	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000535193	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000535193	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000535193	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
In-frame	ENST00000543771	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000543771	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000543771	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000543771	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000543771	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000543771	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000543771	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000543771	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
In-frame	ENST00000381306	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381306	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381306	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381306	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381306	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000381306	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000381306	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000381306	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
In-frame	ENST00000381309	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381309	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381309	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381309	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000381309	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000381309	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000381309	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000381309	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000442236	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000442236	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000442236	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000442236	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000442236	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3UTR	ENST00000442236	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3UTR	ENST00000442236	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3UTR	ENST00000442236	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3CDS	ENST00000489243	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3CDS	ENST00000489243	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3CDS	ENST00000489243	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3CDS	ENST00000489243	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3CDS	ENST00000489243	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3UTR	ENST00000489243	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3UTR	ENST00000489243	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
3UTR-3UTR	ENST00000489243	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000536108	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000536108	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000536108	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000536108	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3CDS	ENST00000536108	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3UTR	ENST00000536108	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3UTR	ENST00000536108	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5UTR-3UTR	ENST00000536108	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3CDS	ENST00000428870	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3CDS	ENST00000428870	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3CDS	ENST00000428870	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3CDS	ENST00000428870	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3CDS	ENST00000428870	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3UTR	ENST00000428870	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3UTR	ENST00000428870	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
intron-3UTR	ENST00000428870	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
In-frame	ENST00000401787	ENST00000560281		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000401787	ENST00000407092		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000401787	ENST00000272369		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000401787	ENST00000488550		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
Frame-shit	ENST00000401787	ENST00000398506		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000401787	ENST00000444274		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000401787	ENST00000495021		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-3UTR	ENST00000401787	ENST00000409517		ChiTaRS3.1			DA081548	KDM4C	chr9	6793134	+	MEIS1	chr2	66794583	+
5CDS-5UTR	ENST00000375442	ENST00000260356		ChiTaRS3.1			BM547548	TSPYL2	chrX	53111698	+	THBS1	chr15	39873356	+
intron-intron	ENST00000314888	ENST00000506502		ChiTaRS3.1			BQ027059	TLN1	chr9	35697408	+	RBM27	chr5	145666578	-
intron-3UTR	ENST00000314888	ENST00000265271		ChiTaRS3.1			BQ027059	TLN1	chr9	35697408	+	RBM27	chr5	145666578	-
intron-intron	ENST00000540444	ENST00000506502		ChiTaRS3.1			BQ027059	TLN1	chr9	35697408	+	RBM27	chr5	145666578	-
intron-3UTR	ENST00000540444	ENST00000265271		ChiTaRS3.1			BQ027059	TLN1	chr9	35697408	+	RBM27	chr5	145666578	-
intron-intron	ENST00000464379	ENST00000506502		ChiTaRS3.1			BQ027059	TLN1	chr9	35697408	+	RBM27	chr5	145666578	-
intron-3UTR	ENST00000464379	ENST00000265271		ChiTaRS3.1			BQ027059	TLN1	chr9	35697408	+	RBM27	chr5	145666578	-
5UTR-intron	ENST00000418115	ENST00000471014		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000418115	ENST00000405570		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000418115	ENST00000396183		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000418115	ENST00000349496		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000418115	ENST00000453024		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000418115	ENST00000396185		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-intron	ENST00000454011	ENST00000471014		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000454011	ENST00000405570		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000454011	ENST00000396183		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000454011	ENST00000349496		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000454011	ENST00000453024		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000454011	ENST00000396185		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-intron	ENST00000422781	ENST00000471014		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000422781	ENST00000405570		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000422781	ENST00000396183		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000422781	ENST00000349496		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000422781	ENST00000453024		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
5UTR-5UTR	ENST00000422781	ENST00000396185		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
intron-intron	ENST00000265538	ENST00000471014		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
intron-5UTR	ENST00000265538	ENST00000405570		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
intron-5UTR	ENST00000265538	ENST00000396183		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
intron-5UTR	ENST00000265538	ENST00000349496		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
intron-5UTR	ENST00000265538	ENST00000453024		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
intron-5UTR	ENST00000265538	ENST00000396185		ChiTaRS3.1			DA715882	RHOA	chr3	49449252	-	CTNNB1	chr3	41265510	+
Frame-shit	ENST00000341441	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000341441	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000341441	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000341441	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000341441	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000341441	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000341441	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
5CDS-3UTR	ENST00000341441	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000378576	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000378576	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000378576	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000378576	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000378576	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000378576	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000378576	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
5CDS-3UTR	ENST00000378576	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000416162	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000416162	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000416162	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000416162	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000416162	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000416162	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000416162	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
5CDS-3UTR	ENST00000416162	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000393187	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000393187	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000393187	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000393187	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000393187	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000393187	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000393187	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
5CDS-3UTR	ENST00000393187	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000223215	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000223215	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000223215	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000223215	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000223215	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000223215	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000223215	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
5CDS-3UTR	ENST00000223215	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000437945	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000437945	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000437945	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
In-frame	ENST00000437945	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000437945	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000437945	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000437945	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
5CDS-3UTR	ENST00000437945	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000393829		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000546249		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000537728		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000264649		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000585525		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000343619		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3CDS	ENST00000462132	ENST00000544137		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
intron-3UTR	ENST00000462132	ENST00000587797		ChiTaRS3.1			DA696958	MEST	chr7	130138000	+	ATP6V0A1	chr17	40673059	+
Frame-shit	ENST00000300289	ENST00000300289		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
5CDS-intron	ENST00000300289	ENST00000469684		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
5CDS-intron	ENST00000300289	ENST00000538521		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
intron-3CDS	ENST00000469684	ENST00000300289		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
intron-intron	ENST00000469684	ENST00000469684		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
intron-intron	ENST00000469684	ENST00000538521		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
Frame-shit	ENST00000538521	ENST00000300289		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
5CDS-intron	ENST00000538521	ENST00000469684		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
5CDS-intron	ENST00000538521	ENST00000538521		ChiTaRS3.1			BF911999	PDIA3	chr15	44062735	-	PDIA3	chr15	44059077	+
3UTR-3UTR	ENST00000349499	ENST00000262340		ChiTaRS3.1			BI480708	CLIC6	chr21	36090243	+	RPE65	chr1	68895066	-
3UTR-3UTR	ENST00000360731	ENST00000262340		ChiTaRS3.1			BI480708	CLIC6	chr21	36090243	+	RPE65	chr1	68895066	-
intron-3CDS	ENST00000511642	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000511642	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000415497	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000415497	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000372988	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000372988	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000510503	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000510503	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-3CDS	ENST00000511686	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
5UTR-intron	ENST00000511686	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-3CDS	ENST00000372991	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000372991	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-3CDS	ENST00000372987	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000372987	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-3CDS	ENST00000414200	ENST00000316157		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000414200	ENST00000469487		ChiTaRS3.1			AK292946	CCND3	chr6	42016239	-	LARP4B	chr10	931702	-
intron-intron	ENST00000442166	ENST00000556679		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000456570		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000477310		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000425368		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000497841		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000417261		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000427888		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000459734		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000455591		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000433503		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000474621		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000424727		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000436692		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000473139		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000399981		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000419920		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000465211		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000375455		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000489605		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000426239		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000442166	ENST00000419411		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-3UTR	ENST00000442166	ENST00000460958		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000556679		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000456570		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000477310		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000425368		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000497841		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000417261		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000427888		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000459734		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000455591		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000433503		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000474621		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000424727		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000436692		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000473139		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000399981		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000419920		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000465211		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000375455		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000489605		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000426239		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000544873	ENST00000419411		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-3UTR	ENST00000544873	ENST00000460958		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000556679		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000456570		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000477310		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000425368		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000497841		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000417261		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000427888		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000459734		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000455591		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000433503		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000474621		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000424727		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000436692		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000473139		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000399981		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000419920		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000465211		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000375455		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000489605		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000426239		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-intron	ENST00000446022	ENST00000419411		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-3UTR	ENST00000446022	ENST00000460958		ChiTaRS3.1			DA581889	PCOLCE-AS1	chr7	100201758	+	CFB	chr6	3247877	+
intron-3CDS	ENST00000447281	ENST00000344756		ChiTaRS3.1			CB124392	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000447281	ENST00000340368		ChiTaRS3.1			CB124392	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000447281	ENST00000342407		ChiTaRS3.1			CB124392	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000344756		ChiTaRS3.1			CB124392	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000340368		ChiTaRS3.1			CB124392	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000609896	ENST00000342407		ChiTaRS3.1			CB124392	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-intron	ENST00000358183	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000358183	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000358183	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000358183	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000358183	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000358183	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000358183	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000414043	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000361571	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000572543	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000381311	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000348066	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000334456		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000376450		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000444035		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000544570		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000418754		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000540345		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-intron	ENST00000571831	ENST00000540380		ChiTaRS3.1			BQ677895	CAMTA2	chr17	4873303	-	PDE2A	chr11	72305807	-
intron-3CDS	ENST00000332050	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000266269		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000405309		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000351933		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000215919		ChiTaRS3.1			AF254088	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-intron	ENST00000558351	ENST00000476749		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
intron-intron	ENST00000558351	ENST00000372780		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
intron-intron	ENST00000558351	ENST00000329035		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
5CDS-intron	ENST00000334660	ENST00000476749		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
5CDS-intron	ENST00000334660	ENST00000372780		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
5CDS-intron	ENST00000334660	ENST00000329035		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
5CDS-intron	ENST00000560397	ENST00000476749		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
5CDS-intron	ENST00000560397	ENST00000372780		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
5CDS-intron	ENST00000560397	ENST00000329035		ChiTaRS3.1			BG928901	CHP1	chr15	41523639	+	TCEAL2	chrX	101381935	+
intron-5UTR	ENST00000439211	ENST00000371142		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-intron	ENST00000439211	ENST00000490192		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-5UTR	ENST00000505337	ENST00000371142		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-intron	ENST00000505337	ENST00000490192		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-5UTR	ENST00000511032	ENST00000371142		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-intron	ENST00000511032	ENST00000490192		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-5UTR	ENST00000504396	ENST00000371142		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-intron	ENST00000504396	ENST00000490192		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-5UTR	ENST00000513048	ENST00000371142		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-intron	ENST00000513048	ENST00000490192		ChiTaRS3.1			DB727835	DHFR	chr5	79947600	-	TM9SF3	chr10	98346664	-
intron-intron	ENST00000345366	ENST00000392350		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000345366	ENST00000325795		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000345366	ENST00000496543		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000345366	ENST00000392349		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-3UTR	ENST00000345366	ENST00000409519		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000336844	ENST00000392350		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000336844	ENST00000325795		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000336844	ENST00000496543		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000336844	ENST00000392349		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-3UTR	ENST00000336844	ENST00000409519		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000392886	ENST00000392350		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000392886	ENST00000325795		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000392886	ENST00000496543		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000392886	ENST00000392349		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-3UTR	ENST00000392886	ENST00000409519		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000560142	ENST00000392350		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000560142	ENST00000325795		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000560142	ENST00000496543		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-intron	ENST00000560142	ENST00000392349		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-3UTR	ENST00000560142	ENST00000409519		ChiTaRS3.1			BG009005	CSH2	chr17	61950247	-	ORMDL1	chr2	190639482	-
intron-3UTR	ENST00000393561	ENST00000223500		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000393561	ENST00000419016		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-intron	ENST00000393561	ENST00000487080		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000222399	ENST00000223500		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000222399	ENST00000419016		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-intron	ENST00000222399	ENST00000487080		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000393560	ENST00000223500		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000393560	ENST00000419016		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-intron	ENST00000393560	ENST00000487080		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000474380	ENST00000223500		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-3UTR	ENST00000474380	ENST00000419016		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
intron-intron	ENST00000474380	ENST00000487080		ChiTaRS3.1			BX475550	LAMB1	chr7	107569588	+	CHMP5	chr9	33281302	+
Frame-shit	ENST00000263377	ENST00000537011		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000263377	ENST00000438749		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000263377	ENST00000333756		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000371835	ENST00000537011		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000371835	ENST00000438749		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000371835	ENST00000333756		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000360016	ENST00000537011		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000360016	ENST00000438749		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000360016	ENST00000333756		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
intron-3CDS	ENST00000602230	ENST00000537011		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
intron-3CDS	ENST00000602230	ENST00000438749		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
intron-3CDS	ENST00000602230	ENST00000333756		ChiTaRS3.1			AY166680	BRD4	chr19	15364963	-	NUTM1	chr15	34640165	+
Frame-shit	ENST00000355630	ENST00000369784		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000355630	ENST00000487146		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000355630	ENST00000602849		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
Frame-shit	ENST00000396617	ENST00000369784		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000396617	ENST00000487146		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000396617	ENST00000602849		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
Frame-shit	ENST00000402042	ENST00000369784		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000402042	ENST00000487146		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000402042	ENST00000602849		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
intron-3CDS	ENST00000466278	ENST00000369784		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
intron-intron	ENST00000466278	ENST00000487146		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
intron-intron	ENST00000466278	ENST00000602849		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
Frame-shit	ENST00000407029	ENST00000369784		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000407029	ENST00000487146		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000407029	ENST00000602849		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
Frame-shit	ENST00000402630	ENST00000369784		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000402630	ENST00000487146		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
5CDS-intron	ENST00000402630	ENST00000602849		ChiTaRS3.1			AF364037	MKL1	chr22	40859224	-	RBM15	chr1	110888161	+
intron-intron	ENST00000333942	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000333942	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000358365	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000583994	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000545287	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000354266	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000394692	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000581094	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000384756		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000364799		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000384693		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000383926		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000516331		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000384706		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000363981		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000384147		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
intron-intron	ENST00000580976	ENST00000365607		ChiTaRS3.1			BF803944	RHOT1	chr17	30478369	-	SNHG1	chr11	62619954	-
5CDS-intron	ENST00000553781	ENST00000435881		ChiTaRS3.1			L38933	BCL2L2-PABPN1	chr14	23793439	+	MLX	chr17	40729748	-
5CDS-intron	ENST00000553781	ENST00000246912		ChiTaRS3.1			L38933	BCL2L2-PABPN1	chr14	23793439	+	MLX	chr17	40729748	-
5CDS-intron	ENST00000553781	ENST00000346833		ChiTaRS3.1			L38933	BCL2L2-PABPN1	chr14	23793439	+	MLX	chr17	40729748	-
5CDS-intron	ENST00000557008	ENST00000435881		ChiTaRS3.1			L38933	BCL2L2-PABPN1	chr14	23793439	+	MLX	chr17	40729748	-
5CDS-intron	ENST00000557008	ENST00000246912		ChiTaRS3.1			L38933	BCL2L2-PABPN1	chr14	23793439	+	MLX	chr17	40729748	-
5CDS-intron	ENST00000557008	ENST00000346833		ChiTaRS3.1			L38933	BCL2L2-PABPN1	chr14	23793439	+	MLX	chr17	40729748	-
5UTR-5UTR	ENST00000332149	ENST00000306376		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-5UTR	ENST00000332149	ENST00000434744		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-5UTR	ENST00000332149	ENST00000537818		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-intron	ENST00000332149	ENST00000480706		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-5UTR	ENST00000398585	ENST00000306376		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-5UTR	ENST00000398585	ENST00000434744		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-5UTR	ENST00000398585	ENST00000537818		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-intron	ENST00000398585	ENST00000480706		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-5UTR	ENST00000458356	ENST00000306376		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-5UTR	ENST00000458356	ENST00000434744		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-5UTR	ENST00000458356	ENST00000537818		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-intron	ENST00000458356	ENST00000480706		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-5UTR	ENST00000497881	ENST00000306376		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-5UTR	ENST00000497881	ENST00000434744		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-5UTR	ENST00000497881	ENST00000537818		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
5UTR-intron	ENST00000497881	ENST00000480706		ChiTaRS3.1			EU314929	TMPRSS2	chr21	42880007	-	ETV5	chr3	185823734	-
intron-intron	ENST00000520052	ENST00000336926		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000520052	ENST00000434438		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000520052	ENST00000479835		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000520734	ENST00000336926		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000520734	ENST00000434438		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000520734	ENST00000479835		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000518386	ENST00000336926		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000518386	ENST00000434438		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-intron	ENST00000518386	ENST00000479835		ChiTaRS3.1			AW119175	ANGPT1	chr8	108348501	+	HIP1	chr7	75190630	+
intron-3UTR	ENST00000397707	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397707	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000397707	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397707	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560611	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560611	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560611	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560611	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000354181	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000354181	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000354181	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000354181	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000458406	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000458406	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000458406	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000458406	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000397702	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397702	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000397702	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000397702	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000290209	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000290209	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000290209	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000290209	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558667	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558667	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558667	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558667	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558589	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558589	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000558589	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000558589	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000451844	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000451844	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000451844	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000451844	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560164	ENST00000358204		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560164	ENST00000537767		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000560164	ENST00000393481		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-intron	ENST00000560164	ENST00000485009		ChiTaRS3.1			AA143188	SLC12A6	chr15	34524726	-	TES	chr7	115898429	+
intron-3UTR	ENST00000587708	ENST00000420502		ChiTaRS3.1			BM544556	PSENEN	chr19	36245035	+	SLC38A3	chr3	50258233	+
intron-3UTR	ENST00000591949	ENST00000420502		ChiTaRS3.1			BM544556	PSENEN	chr19	36245035	+	SLC38A3	chr3	50258233	+
intron-3UTR	ENST00000222266	ENST00000420502		ChiTaRS3.1			BM544556	PSENEN	chr19	36245035	+	SLC38A3	chr3	50258233	+
5UTR-3UTR	ENST00000455537	ENST00000380050		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000455537	ENST00000265741		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000455537	ENST00000406263		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000455537	ENST00000436577		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-intron	ENST00000455537	ENST00000496279		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000286452	ENST00000380050		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000286452	ENST00000265741		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000286452	ENST00000406263		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-3UTR	ENST00000286452	ENST00000436577		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
5UTR-intron	ENST00000286452	ENST00000496279		ChiTaRS3.1			AA984341	KIF5A	chr12	57943986	+	CDK14	chr7	90836542	+
intron-3CDS	ENST00000263207	ENST00000217381		ChiTaRS3.1			BE700872	ARVCF	chr22	19966471	-	SNTA1	chr20	32000499	-
intron-3CDS	ENST00000344269	ENST00000217381		ChiTaRS3.1			BE700872	ARVCF	chr22	19966471	-	SNTA1	chr20	32000499	-
intron-3CDS	ENST00000406522	ENST00000217381		ChiTaRS3.1			BE700872	ARVCF	chr22	19966471	-	SNTA1	chr20	32000499	-
intron-3CDS	ENST00000401994	ENST00000217381		ChiTaRS3.1			BE700872	ARVCF	chr22	19966471	-	SNTA1	chr20	32000499	-
intron-3CDS	ENST00000406259	ENST00000217381		ChiTaRS3.1			BE700872	ARVCF	chr22	19966471	-	SNTA1	chr20	32000499	-
intron-3CDS	ENST00000487793	ENST00000217381		ChiTaRS3.1			BE700872	ARVCF	chr22	19966471	-	SNTA1	chr20	32000499	-
intron-intron	ENST00000426333	ENST00000590320		ChiTaRS3.1			BI005694	EFTUD2	chr17	42928283	-	S1PR2	chr19	10333625	-
intron-intron	ENST00000592576	ENST00000590320		ChiTaRS3.1			BI005694	EFTUD2	chr17	42928283	-	S1PR2	chr19	10333625	-
5CDS-intron	ENST00000591382	ENST00000590320		ChiTaRS3.1			BI005694	EFTUD2	chr17	42928283	-	S1PR2	chr19	10333625	-
intron-intron	ENST00000402521	ENST00000590320		ChiTaRS3.1			BI005694	EFTUD2	chr17	42928283	-	S1PR2	chr19	10333625	-
intron-intron	ENST00000589211	ENST00000590320		ChiTaRS3.1			BI005694	EFTUD2	chr17	42928283	-	S1PR2	chr19	10333625	-
5CDS-5UTR	ENST00000332624	ENST00000250092		ChiTaRS3.1			BP304224	TRAK2	chr2	202241935	-	CD68	chr17	7482958	+
5CDS-5UTR	ENST00000332624	ENST00000380498		ChiTaRS3.1			BP304224	TRAK2	chr2	202241935	-	CD68	chr17	7482958	+
intron-5UTR	ENST00000430254	ENST00000250092		ChiTaRS3.1			BP304224	TRAK2	chr2	202241935	-	CD68	chr17	7482958	+
intron-5UTR	ENST00000430254	ENST00000380498		ChiTaRS3.1			BP304224	TRAK2	chr2	202241935	-	CD68	chr17	7482958	+
intron-5UTR	ENST00000451703	ENST00000250092		ChiTaRS3.1			BP304224	TRAK2	chr2	202241935	-	CD68	chr17	7482958	+
intron-5UTR	ENST00000451703	ENST00000380498		ChiTaRS3.1			BP304224	TRAK2	chr2	202241935	-	CD68	chr17	7482958	+
Frame-shit	ENST00000356577	ENST00000361436		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000356577	ENST00000536368		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
5CDS-5UTR	ENST00000356577	ENST00000497322		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000290239	ENST00000361436		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000290239	ENST00000536368		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
5CDS-5UTR	ENST00000290239	ENST00000497322		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
intron-3CDS	ENST00000381692	ENST00000361436		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
intron-3CDS	ENST00000381692	ENST00000536368		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
intron-5UTR	ENST00000381692	ENST00000497322		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000300278	ENST00000361436		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000300278	ENST00000536368		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
5CDS-5UTR	ENST00000300278	ENST00000497322		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000381679	ENST00000361436		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000381679	ENST00000536368		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
5CDS-5UTR	ENST00000381679	ENST00000497322		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
intron-3CDS	ENST00000470533	ENST00000361436		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
intron-3CDS	ENST00000470533	ENST00000536368		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
intron-5UTR	ENST00000470533	ENST00000497322		ChiTaRS3.1			AA036700	SON	chr21	34926623	+	RPL12	chr9	130211621	-
Frame-shit	ENST00000394672	ENST00000259037		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
Frame-shit	ENST00000394672	ENST00000493866		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
In-frame	ENST00000394672	ENST00000472629		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
5CDS-3UTR	ENST00000394672	ENST00000473500		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
Frame-shit	ENST00000326595	ENST00000259037		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
Frame-shit	ENST00000326595	ENST00000493866		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
In-frame	ENST00000326595	ENST00000472629		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
5CDS-3UTR	ENST00000326595	ENST00000473500		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
Frame-shit	ENST00000436465	ENST00000259037		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
Frame-shit	ENST00000436465	ENST00000493866		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
In-frame	ENST00000436465	ENST00000472629		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
5CDS-3UTR	ENST00000436465	ENST00000473500		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3CDS	ENST00000442522	ENST00000259037		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3CDS	ENST00000442522	ENST00000493866		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3CDS	ENST00000442522	ENST00000472629		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3UTR	ENST00000442522	ENST00000473500		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3CDS	ENST00000538560	ENST00000259037		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3CDS	ENST00000538560	ENST00000493866		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3CDS	ENST00000538560	ENST00000472629		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
intron-3UTR	ENST00000538560	ENST00000473500		ChiTaRS3.1			AA406390	CCDC66	chr3	56605331	+	NDUFB5	chr3	179341707	+
5CDS-3UTR	ENST00000217159	ENST00000372508		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000217159	ENST00000372507		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000217159	ENST00000372506		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-intron	ENST00000217159	ENST00000397044		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000217159	ENST00000372504		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000217159	ENST00000372502		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000370507	ENST00000372508		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000370507	ENST00000372507		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000370507	ENST00000372506		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-intron	ENST00000370507	ENST00000397044		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000370507	ENST00000372504		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-3UTR	ENST00000370507	ENST00000372502		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
intron-3UTR	ENST00000470412	ENST00000372508		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
intron-3UTR	ENST00000470412	ENST00000372507		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
intron-3UTR	ENST00000470412	ENST00000372506		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
intron-intron	ENST00000470412	ENST00000397044		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
intron-3UTR	ENST00000470412	ENST00000372504		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
intron-3UTR	ENST00000470412	ENST00000372502		ChiTaRS3.1			BU682335	SLCO4A1	chr20	61303177	-	ZNF691	chr1	43318083	-
5CDS-intron	ENST00000381026	ENST00000344188		ChiTaRS3.1			CA308567	ATP5EP2	chr13	28519407	-	CSF1	chr1	110466334	-
5CDS-intron	ENST00000381026	ENST00000329608		ChiTaRS3.1			CA308567	ATP5EP2	chr13	28519407	-	CSF1	chr1	110466334	-
5CDS-intron	ENST00000381026	ENST00000369802		ChiTaRS3.1			CA308567	ATP5EP2	chr13	28519407	-	CSF1	chr1	110466334	-
5CDS-intron	ENST00000381026	ENST00000420111		ChiTaRS3.1			CA308567	ATP5EP2	chr13	28519407	-	CSF1	chr1	110466334	-
5CDS-intron	ENST00000381026	ENST00000369801		ChiTaRS3.1			CA308567	ATP5EP2	chr13	28519407	-	CSF1	chr1	110466334	-
5CDS-intron	ENST00000381026	ENST00000526001		ChiTaRS3.1			CA308567	ATP5EP2	chr13	28519407	-	CSF1	chr1	110466334	-
5CDS-intron	ENST00000420083	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000420083	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000420083	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000420083	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000420083	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000420083	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000420083	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000449870	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000449870	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000449870	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000449870	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000449870	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000449870	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000449870	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000318511	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000318511	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000318511	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000318511	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000318511	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000318511	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000318511	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000407004	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000407004	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000407004	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000407004	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000407004	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000407004	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000407004	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000589998	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000589998	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000589998	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000589998	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000589998	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000589998	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000589998	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000250241	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000250241	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000250241	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000250241	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000250241	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000250241	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000250241	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000592763	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000592763	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000592763	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000592763	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000592763	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000592763	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000592763	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000588657	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000588657	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000588657	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000588657	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000588657	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000588657	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000588657	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000590261	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000590261	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000590261	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-3UTR	ENST00000590261	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000590261	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000590261	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
5CDS-intron	ENST00000590261	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-intron	ENST00000586544	ENST00000255557		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-intron	ENST00000586544	ENST00000577615		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-3UTR	ENST00000586544	ENST00000268942		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-3UTR	ENST00000586544	ENST00000359042		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-intron	ENST00000586544	ENST00000426147		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-intron	ENST00000586544	ENST00000535032		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
intron-intron	ENST00000586544	ENST00000582793		ChiTaRS3.1			CB218537	ILF3	chr19	10781860	+	C17orf80	chr17	71244788	+
In-frame	ENST00000383440	ENST00000320876		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
In-frame	ENST00000383440	ENST00000261598		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
5CDS-intron	ENST00000383440	ENST00000609587		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
In-frame	ENST00000262126	ENST00000320876		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
In-frame	ENST00000262126	ENST00000261598		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
5CDS-intron	ENST00000262126	ENST00000609587		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
3UTR-3CDS	ENST00000540578	ENST00000320876		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
3UTR-3CDS	ENST00000540578	ENST00000261598		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
3UTR-intron	ENST00000540578	ENST00000609587		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
In-frame	ENST00000400020	ENST00000320876		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
In-frame	ENST00000400020	ENST00000261598		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
5CDS-intron	ENST00000400020	ENST00000609587		ChiTaRS3.1			CN266894	ANKRD12	chr18	9182518	+	SMCHD1	chr18	2703688	+
intron-3UTR	ENST00000367760	ENST00000296425		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000367760	ENST00000520121		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000367760	ENST00000394276		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000367760	ENST00000512483		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000367760	ENST00000503872		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000367760	ENST00000503588		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
3UTR-3UTR	ENST00000239461	ENST00000296425		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
3UTR-3UTR	ENST00000239461	ENST00000520121		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
3UTR-3UTR	ENST00000239461	ENST00000394276		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
3UTR-3UTR	ENST00000239461	ENST00000512483		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
3UTR-3UTR	ENST00000239461	ENST00000503872		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
3UTR-3UTR	ENST00000239461	ENST00000503588		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000497230	ENST00000296425		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000497230	ENST00000520121		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000497230	ENST00000394276		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000497230	ENST00000512483		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000497230	ENST00000503872		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000497230	ENST00000503588		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000476867	ENST00000296425		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000476867	ENST00000520121		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000476867	ENST00000394276		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000476867	ENST00000512483		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000476867	ENST00000503872		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
intron-3UTR	ENST00000476867	ENST00000503588		ChiTaRS3.1			AI394219	PRRX1	chr1	170708337	-	PGRMC2	chr4	129192113	+
Frame-shit	ENST00000398215	ENST00000377707		ChiTaRS3.1			BM712054	CRYBB2	chr22	25620974	+	SHB	chr9	37955904	-
5CDS-intron	ENST00000398215	ENST00000377700		ChiTaRS3.1			BM712054	CRYBB2	chr22	25620974	+	SHB	chr9	37955904	-
intron-3UTR	ENST00000371222	ENST00000233545		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-3UTR	ENST00000371222	ENST00000402310		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-3UTR	ENST00000371222	ENST00000380044		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-3UTR	ENST00000371222	ENST00000357186		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-3UTR	ENST00000371222	ENST00000402722		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-3UTR	ENST00000371222	ENST00000405983		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-intron	ENST00000371222	ENST00000405076		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-intron	ENST00000371222	ENST00000403262		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-intron	ENST00000371222	ENST00000399052		ChiTaRS3.1			CR981234	JUN	chr1	59248665	-	MPV17	chr2	27532533	-
intron-intron	ENST00000343348	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000343348	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000257414	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000257414	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000510263	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000510263	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000513137	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000513137	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000282394	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000282394	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000503865	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503865	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-intron	ENST00000503962	ENST00000586683		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000252445		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000587806		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000589171		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000591674		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000586120		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000590700		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3UTR	ENST00000503962	ENST00000591912		ChiTaRS3.1			AI650814	SEMA6A	chr5	115781956	+	ELOF1	chr19	11664451	+
intron-3CDS	ENST00000447281	ENST00000344756		ChiTaRS3.1			CB126121	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000447281	ENST00000340368		ChiTaRS3.1			CB126121	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000447281	ENST00000342407		ChiTaRS3.1			CB126121	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000344756		ChiTaRS3.1			CB126121	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000340368		ChiTaRS3.1			CB126121	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000609896	ENST00000342407		ChiTaRS3.1			CB126121	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000181796	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000181796	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000181796	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000181796	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000181796	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000181796	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000378470	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378470	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378470	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378470	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000378470	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378470	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000468747	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000468747	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000468747	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000468747	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000468747	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000468747	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000378467	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378467	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378467	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378467	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000378467	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378467	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000378465	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378465	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378465	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378465	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000378465	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378465	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-3CDS	ENST00000378458	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-5UTR	ENST00000378458	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-5UTR	ENST00000378458	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-5UTR	ENST00000378458	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-3UTR	ENST00000378458	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-5UTR	ENST00000378458	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000478076	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000478076	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000478076	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000478076	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000478076	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000478076	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000378462	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378462	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378462	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378462	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000378462	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000378462	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000496330	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000496330	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000496330	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000496330	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000496330	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000496330	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000479731	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000479731	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000479731	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000479731	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000479731	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000479731	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3CDS	ENST00000471815	ENST00000332674		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000471815	ENST00000361248		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000471815	ENST00000239007		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000471815	ENST00000393134		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-3UTR	ENST00000471815	ENST00000485566		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
intron-5UTR	ENST00000471815	ENST00000369612		ChiTaRS3.1			DB176204	FAM107B	chr10	14613762	-	MXI1	chr10	111987945	+
5UTR-intron	ENST00000399951	ENST00000368682		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000354650		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000229471		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000368667		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000368678		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000229470		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000356013		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000538466		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000399951	ENST00000476769		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000368682		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000354650		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000229471		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000368667		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000368678		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000229470		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000356013		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000538466		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5CDS-intron	ENST00000399953	ENST00000476769		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000368682		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000354650		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000229471		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000368667		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000368678		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000229470		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000356013		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000538466		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
5UTR-intron	ENST00000405960	ENST00000476769		ChiTaRS3.1			BQ432211	NPRL3	chr16	180520	-	FYN	chr6	112030267	-
intron-3UTR	ENST00000499247	ENST00000313833		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-intron	ENST00000499247	ENST00000555087		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-intron	ENST00000499247	ENST00000440021		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-3UTR	ENST00000268957	ENST00000313833		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-intron	ENST00000268957	ENST00000555087		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-intron	ENST00000268957	ENST00000440021		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-3UTR	ENST00000509385	ENST00000313833		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-intron	ENST00000509385	ENST00000555087		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
intron-intron	ENST00000509385	ENST00000440021		ChiTaRS3.1			BU603597	TOB1	chr17	48940494	-	FBXO34	chr14	55819885	+
Frame-shit	ENST00000316218	ENST00000317881		ChiTaRS3.1			CX760229	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
5CDS-3UTR	ENST00000316218	ENST00000460013		ChiTaRS3.1			CX760229	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
3UTR-3CDS	ENST00000467157	ENST00000317881		ChiTaRS3.1			CX760229	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
3UTR-3UTR	ENST00000467157	ENST00000460013		ChiTaRS3.1			CX760229	PDIA5	chr3	122869127	+	SLC25A5	chrX	118603640	+
intron-intron	ENST00000256339	ENST00000390548		ChiTaRS3.1			BG183154	UNC79	chr14	93814749	-	IGHG1	chr2	90386087	-
intron-intron	ENST00000555664	ENST00000390548		ChiTaRS3.1			BG183154	UNC79	chr14	93814749	-	IGHG1	chr2	90386087	-
intron-intron	ENST00000553484	ENST00000390548		ChiTaRS3.1			BG183154	UNC79	chr14	93814749	-	IGHG1	chr2	90386087	-
intron-intron	ENST00000393151	ENST00000390548		ChiTaRS3.1			BG183154	UNC79	chr14	93814749	-	IGHG1	chr2	90386087	-
5CDS-intron	ENST00000380325	ENST00000542413		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
5CDS-intron	ENST00000380325	ENST00000600978		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
5CDS-intron	ENST00000380325	ENST00000598168		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
5CDS-intron	ENST00000380325	ENST00000411902		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
5CDS-intron	ENST00000380325	ENST00000253727		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
5CDS-intron	ENST00000380325	ENST00000599105		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
5CDS-intron	ENST00000380325	ENST00000593926		ChiTaRS3.1			AI807188	MRPS26	chr20	3028499	+	NR1H2	chr19	50838351	-
3UTR-5UTR	ENST00000447654	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000447654	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000447654	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000447654	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000401473	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000401473	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000401473	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000401473	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000311487	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000311487	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000311487	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000311487	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000347617	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000347617	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000347617	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000347617	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000395004	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000395004	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000395004	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000395004	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
intron-5UTR	ENST00000478214	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
intron-5UTR	ENST00000478214	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
intron-5UTR	ENST00000478214	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
intron-5UTR	ENST00000478214	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000374116	ENST00000549920		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000374116	ENST00000550645		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000374116	ENST00000552588		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
3UTR-5UTR	ENST00000374116	ENST00000549273		ChiTaRS3.1			BC051359	HMGA1	chr6	34213432	-	RPL18	chr19	49122421	-
intron-3CDS	ENST00000263650	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000263650	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000263650	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000263650	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000263650	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000389989	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000389989	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000389989	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000389989	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000389989	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000525498	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000525498	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000525498	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000525498	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000525498	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000542243	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000542243	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000542243	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000542243	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000542243	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000348039	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000348039	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000348039	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000348039	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000348039	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000478260	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000478260	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000478260	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000478260	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000478260	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000528124	ENST00000215567		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000528124	ENST00000596073		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000528124	ENST00000600083		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3CDS	ENST00000528124	ENST00000436007		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-intron	ENST00000528124	ENST00000596164		ChiTaRS3.1			AA329184	OSBPL5	chr11	3151627	-	TECR	chr19	14676568	+
intron-3UTR	ENST00000244711	ENST00000496817		ChiTaRS3.1			BM471847	MEA1	chr6	42974711	+	S100A6	chr1	153507137	-
intron-3UTR	ENST00000244711	ENST00000368719		ChiTaRS3.1			BM471847	MEA1	chr6	42974711	+	S100A6	chr1	153507137	-
intron-3UTR	ENST00000244711	ENST00000368720		ChiTaRS3.1			BM471847	MEA1	chr6	42974711	+	S100A6	chr1	153507137	-
intron-intron	ENST00000384756	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384756	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000384756	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384756	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
5CDS-intron	ENST00000364799	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
5CDS-intron	ENST00000364799	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
5CDS-5UTR	ENST00000364799	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
5CDS-intron	ENST00000364799	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384693	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384693	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000384693	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384693	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000383926	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000383926	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000383926	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000383926	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000516331	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000516331	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000516331	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000516331	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384706	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384706	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000384706	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384706	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000363981	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000363981	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000363981	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000363981	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384147	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384147	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000384147	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000384147	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000365607	ENST00000316292		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000365607	ENST00000491404		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-5UTR	ENST00000365607	ENST00000309268		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
intron-intron	ENST00000365607	ENST00000331523		ChiTaRS3.1			DA514269	SNHG1	chr11	62620801	-	EEF1A1	chr6	74230755	-
3UTR-3UTR	ENST00000263960	ENST00000378746		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
3UTR-intron	ENST00000263960	ENST00000378735		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
3UTR-intron	ENST00000263960	ENST00000403231		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
3UTR-intron	ENST00000263960	ENST00000487055		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-3UTR	ENST00000409398	ENST00000378746		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-intron	ENST00000409398	ENST00000378735		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-intron	ENST00000409398	ENST00000403231		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-intron	ENST00000409398	ENST00000487055		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-3UTR	ENST00000488445	ENST00000378746		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-intron	ENST00000488445	ENST00000378735		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-intron	ENST00000488445	ENST00000403231		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
intron-intron	ENST00000488445	ENST00000487055		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-3UTR	ENST00000545340	ENST00000378746		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-intron	ENST00000545340	ENST00000378735		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-intron	ENST00000545340	ENST00000403231		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-intron	ENST00000545340	ENST00000487055		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-3UTR	ENST00000409010	ENST00000378746		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-intron	ENST00000409010	ENST00000378735		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-intron	ENST00000409010	ENST00000403231		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
5CDS-intron	ENST00000409010	ENST00000487055		ChiTaRS3.1			AK308977	COQ10B	chr2	198339134	+	KIF3A	chr5	132029426	-
3UTR-3CDS	ENST00000355893	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000355893	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000355893	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000484955	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000484955	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000359117	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000359117	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000471745	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000471745	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000497004	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000497004	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000469452	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000469452	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-3CDS	ENST00000482628	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
intron-5UTR	ENST00000482628	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000478894	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000478894	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000372954		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000393608		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000541172		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000357558		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000325721		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000538431		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000277465		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000372948		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-3CDS	ENST00000392822	ENST00000372938		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
3UTR-5UTR	ENST00000392822	ENST00000476727		ChiTaRS3.1			CA423309	MLF1	chr3	158323076	-	CIZ1	chr9	130942714	+
Frame-shit	ENST00000302907	ENST00000390548		ChiTaRS3.1			AW664386	RPS9	chr19	54710261	-	IGHG1	chr14	106208281	+
Frame-shit	ENST00000391752	ENST00000390548		ChiTaRS3.1			AW664386	RPS9	chr19	54710261	-	IGHG1	chr14	106208281	+
Frame-shit	ENST00000402367	ENST00000390548		ChiTaRS3.1			AW664386	RPS9	chr19	54710261	-	IGHG1	chr14	106208281	+
intron-3CDS	ENST00000391751	ENST00000390548		ChiTaRS3.1			AW664386	RPS9	chr19	54710261	-	IGHG1	chr14	106208281	+
Frame-shit	ENST00000391753	ENST00000390548		ChiTaRS3.1			AW664386	RPS9	chr19	54710261	-	IGHG1	chr14	106208281	+
Frame-shit	ENST00000441429	ENST00000390548		ChiTaRS3.1			AW664386	RPS9	chr19	54710261	-	IGHG1	chr14	106208281	+
Frame-shit	ENST00000210444	ENST00000343304		ChiTaRS3.1			AA421701	NANS	chr9	100845169	-	LRRC41	chr1	46746954	+
5CDS-5UTR	ENST00000210444	ENST00000472710		ChiTaRS3.1			AA421701	NANS	chr9	100845169	-	LRRC41	chr1	46746954	+
3UTR-3CDS	ENST00000461452	ENST00000343304		ChiTaRS3.1			AA421701	NANS	chr9	100845169	-	LRRC41	chr1	46746954	+
3UTR-5UTR	ENST00000461452	ENST00000472710		ChiTaRS3.1			AA421701	NANS	chr9	100845169	-	LRRC41	chr1	46746954	+
intron-3UTR	ENST00000596528	ENST00000466764		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000596528	ENST00000376759		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000596528	ENST00000430348		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000596528	ENST00000376755		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000596528	ENST00000354480		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000466764		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000376759		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000430348		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000599743	ENST00000376755		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000599743	ENST00000354480		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000466764		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000376759		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000430348		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000300619	ENST00000376755		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000300619	ENST00000354480		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000466764		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000376759		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000430348		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000397082	ENST00000376755		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-3UTR	ENST00000397082	ENST00000354480		ChiTaRS3.1			BU678763	ZNF91	chr19	23521758	+	RBM3	chrX	48436351	-
intron-intron	ENST00000354989	ENST00000397817		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000219431		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000475280		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000397817		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000219431		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000475280		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000397817		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000219431		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000475280		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000397817		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000219431		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000475280		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000397817		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000219431		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000475280		ChiTaRS3.1			EL582887	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
Frame-shit	ENST00000455332	ENST00000332047		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
Frame-shit	ENST00000455332	ENST00000354446		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
Frame-shit	ENST00000455332	ENST00000337090		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000455332	ENST00000504013		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000455332	ENST00000383229		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000455332	ENST00000513612		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000455332	ENST00000606977		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
In-frame	ENST00000260187	ENST00000332047		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
In-frame	ENST00000260187	ENST00000354446		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
In-frame	ENST00000260187	ENST00000337090		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000260187	ENST00000504013		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000260187	ENST00000383229		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000260187	ENST00000513612		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000260187	ENST00000606977		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
Frame-shit	ENST00000525735	ENST00000332047		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
Frame-shit	ENST00000525735	ENST00000354446		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
Frame-shit	ENST00000525735	ENST00000337090		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000525735	ENST00000504013		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000525735	ENST00000383229		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000525735	ENST00000513612		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
5CDS-3UTR	ENST00000525735	ENST00000606977		ChiTaRS3.1			CD671082	USP2	chr11	119228860	-	CEP63	chr3	134225977	+
intron-5UTR	ENST00000548241	ENST00000343986		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-3UTR	ENST00000548241	ENST00000492356		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-5UTR	ENST00000548241	ENST00000370562		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-5UTR	ENST00000548241	ENST00000450116		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-5UTR	ENST00000267116	ENST00000343986		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-3UTR	ENST00000267116	ENST00000492356		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-5UTR	ENST00000267116	ENST00000370562		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-5UTR	ENST00000267116	ENST00000450116		ChiTaRS3.1			BC036946	ANKRD52	chr12	56635489	-	RPS21	chr20	60962379	+
intron-3CDS	ENST00000356663	ENST00000592782		ChiTaRS3.1			BF811419	TMEM259	chr19	1010090	-	NMT1	chr17	43181086	+
intron-3CDS	ENST00000356663	ENST00000258960		ChiTaRS3.1			BF811419	TMEM259	chr19	1010090	-	NMT1	chr17	43181086	+
intron-intron	ENST00000356663	ENST00000590114		ChiTaRS3.1			BF811419	TMEM259	chr19	1010090	-	NMT1	chr17	43181086	+
intron-3CDS	ENST00000333175	ENST00000592782		ChiTaRS3.1			BF811419	TMEM259	chr19	1010090	-	NMT1	chr17	43181086	+
intron-3CDS	ENST00000333175	ENST00000258960		ChiTaRS3.1			BF811419	TMEM259	chr19	1010090	-	NMT1	chr17	43181086	+
intron-intron	ENST00000333175	ENST00000590114		ChiTaRS3.1			BF811419	TMEM259	chr19	1010090	-	NMT1	chr17	43181086	+
intron-3CDS	ENST00000308677	ENST00000371521		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000308677	ENST00000344894		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000308677	ENST00000427047		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000308677	ENST00000458322		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000350356	ENST00000371521		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000350356	ENST00000344894		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000350356	ENST00000427047		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000350356	ENST00000458322		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000590853	ENST00000371521		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000590853	ENST00000344894		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000590853	ENST00000427047		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000590853	ENST00000458322		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000589994	ENST00000371521		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000589994	ENST00000344894		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000589994	ENST00000427047		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
intron-3CDS	ENST00000589994	ENST00000458322		ChiTaRS3.1			BQ278860	PRKACA	chr19	14203311	-	NDOR1	chr9	140110420	+
In-frame	ENST00000355666	ENST00000520539		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000355666	ENST00000220959		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000355666	ENST00000518205		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000355666	ENST00000521922		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
5CDS-intron	ENST00000355666	ENST00000519528		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000399017	ENST00000520539		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000399017	ENST00000220959		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000399017	ENST00000518205		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000399017	ENST00000521922		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
5CDS-intron	ENST00000399017	ENST00000519528		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000354749	ENST00000520539		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000354749	ENST00000220959		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000354749	ENST00000518205		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
In-frame	ENST00000354749	ENST00000521922		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
5CDS-intron	ENST00000354749	ENST00000519528		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
3UTR-3CDS	ENST00000479930	ENST00000520539		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
3UTR-3CDS	ENST00000479930	ENST00000220959		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
3UTR-3CDS	ENST00000479930	ENST00000518205		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
3UTR-3CDS	ENST00000479930	ENST00000521922		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
3UTR-intron	ENST00000479930	ENST00000519528		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000540756	ENST00000520539		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000540756	ENST00000220959		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000540756	ENST00000518205		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000540756	ENST00000521922		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-intron	ENST00000540756	ENST00000519528		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000399010	ENST00000520539		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000399010	ENST00000220959		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000399010	ENST00000518205		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-3CDS	ENST00000399010	ENST00000521922		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-intron	ENST00000399010	ENST00000519528		ChiTaRS3.1			AW363719	TTC3	chr21	38538884	+	UBR5	chr8	103273392	-
intron-intron	ENST00000442713	ENST00000396402		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000442713	ENST00000260433		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000442713	ENST00000396404		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000442713	ENST00000559878		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000442713	ENST00000405913		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000442713	ENST00000557858		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000442713	ENST00000492852		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000396402		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000260433		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000396404		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000559878		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000405913		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000557858		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000269445	ENST00000492852		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000396402		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000260433		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000396404		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000559878		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000405913		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000557858		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000584977	ENST00000492852		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000396402		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000260433		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000396404		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000559878		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000405913		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000557858		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-intron	ENST00000578396	ENST00000492852		ChiTaRS3.1			BG004269	DYM	chr18	46585923	-	CYP19A1	chr15	51590051	-
intron-3CDS	ENST00000216181	ENST00000472174		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000216181	ENST00000532642		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000216181	ENST00000236067		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000216181	ENST00000471859		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3UTR	ENST00000216181	ENST00000472277		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3UTR	ENST00000216181	ENST00000498664		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000475726	ENST00000472174		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000475726	ENST00000532642		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000475726	ENST00000236067		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000475726	ENST00000471859		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3UTR	ENST00000475726	ENST00000472277		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3UTR	ENST00000475726	ENST00000498664		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000401701	ENST00000472174		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000401701	ENST00000532642		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000401701	ENST00000236067		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3CDS	ENST00000401701	ENST00000471859		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3UTR	ENST00000401701	ENST00000472277		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
intron-3UTR	ENST00000401701	ENST00000498664		ChiTaRS3.1			BQ688351	MYH9	chr22	36678119	-	ATP6V0B	chr1	44442470	+
Frame-shit	ENST00000373625	ENST00000337018		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
Frame-shit	ENST00000373625	ENST00000452918		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
Frame-shit	ENST00000373625	ENST00000601879		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
Frame-shit	ENST00000373625	ENST00000600377		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
Frame-shit	ENST00000373625	ENST00000456085		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
5CDS-intron	ENST00000373625	ENST00000598202		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000537234	ENST00000337018		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000537234	ENST00000452918		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000537234	ENST00000601879		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000537234	ENST00000600377		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000537234	ENST00000456085		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-intron	ENST00000537234	ENST00000598202		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000469790	ENST00000337018		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000469790	ENST00000452918		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000469790	ENST00000601879		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000469790	ENST00000600377		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000469790	ENST00000456085		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-intron	ENST00000469790	ENST00000598202		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000545542	ENST00000337018		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000545542	ENST00000452918		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000545542	ENST00000601879		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000545542	ENST00000600377		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-3CDS	ENST00000545542	ENST00000456085		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-intron	ENST00000545542	ENST00000598202		ChiTaRS3.1			CB961425	KPNA6	chr1	32573737	+	SUGP2	chr19	19121152	-
intron-intron	ENST00000326735	ENST00000502288		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000507874		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000341181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000437922		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000394180		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000503004		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000394185		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000394181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000510545		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000511081		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000326735	ENST00000513287		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-5UTR	ENST00000326735	ENST00000508503		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000502288		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000507874		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000341181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000437922		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000394180		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000503004		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000394185		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000394181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000510545		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000511081		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000341676	ENST00000513287		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-5UTR	ENST00000341676	ENST00000508503		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000502288		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000507874		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000341181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000437922		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000394180		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000503004		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000394185		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000394181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000510545		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000511081		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000452699	ENST00000513287		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-5UTR	ENST00000452699	ENST00000508503		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000502288		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000507874		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000341181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000437922		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000394180		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000503004		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000394185		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000394181		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000510545		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000511081		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-intron	ENST00000502860	ENST00000513287		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
intron-5UTR	ENST00000502860	ENST00000508503		ChiTaRS3.1			AW962238	ATP13A2	chr1	17323701	-	CLDND1	chr3	98240254	-
5CDS-5UTR	ENST00000373325	ENST00000374864		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000373325	ENST00000535650		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000373325	ENST00000262650		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-intron	ENST00000373325	ENST00000483727		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000252011	ENST00000374864		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000252011	ENST00000535650		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000252011	ENST00000262650		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-intron	ENST00000252011	ENST00000483727		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000373323	ENST00000374864		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000373323	ENST00000535650		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-5UTR	ENST00000373323	ENST00000262650		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
5CDS-intron	ENST00000373323	ENST00000483727		ChiTaRS3.1			XX000013	DHX35	chr20	37597861	+	ITCH	chr20	32957198	+
Frame-shit	ENST00000362005	ENST00000254770		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000362005	ENST00000486376		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000370389	ENST00000254770		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000370389	ENST00000486376		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000399546	ENST00000254770		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000399546	ENST00000486376		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000394530	ENST00000254770		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000394530	ENST00000486376		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000402388	ENST00000254770		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000402388	ENST00000486376		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
intron-3CDS	ENST00000484781	ENST00000254770		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
intron-intron	ENST00000484781	ENST00000486376		ChiTaRS3.1			BI520125	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
intron-3CDS	ENST00000422508	ENST00000316534		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000422508	ENST00000445609		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000422508	ENST00000393272		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000422508	ENST00000355301		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000422508	ENST00000417665		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-intron	ENST00000422508	ENST00000418527		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000437994	ENST00000316534		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000437994	ENST00000445609		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000437994	ENST00000393272		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000437994	ENST00000355301		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000437994	ENST00000417665		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
5CDS-intron	ENST00000437994	ENST00000418527		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000287097	ENST00000316534		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000287097	ENST00000445609		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000287097	ENST00000393272		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000287097	ENST00000355301		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
In-frame	ENST00000287097	ENST00000417665		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
5CDS-intron	ENST00000287097	ENST00000418527		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000474094	ENST00000316534		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000474094	ENST00000445609		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000474094	ENST00000393272		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000474094	ENST00000355301		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000474094	ENST00000417665		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-intron	ENST00000474094	ENST00000418527		ChiTaRS3.1			W33075	CD109	chr6	74440297	+	NPHP1	chr2	110920711	-
intron-3CDS	ENST00000592984	ENST00000554581		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000592984	ENST00000407796		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000592984	ENST00000349310		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000592984	ENST00000402615		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000592984	ENST00000555528		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000592984	ENST00000554848		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000592984	ENST00000555458		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000592984	ENST00000554192		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000592984	ENST00000544168		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000592984	ENST00000554585		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000004982	ENST00000554581		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000004982	ENST00000407796		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000004982	ENST00000349310		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000004982	ENST00000402615		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000004982	ENST00000555528		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000004982	ENST00000554848		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000004982	ENST00000555458		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000004982	ENST00000554192		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000004982	ENST00000544168		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000004982	ENST00000554585		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000587965	ENST00000554581		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000587965	ENST00000407796		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000587965	ENST00000349310		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000587965	ENST00000402615		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000587965	ENST00000555528		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3CDS	ENST00000587965	ENST00000554848		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000587965	ENST00000555458		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000587965	ENST00000554192		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000587965	ENST00000544168		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-intron	ENST00000587965	ENST00000554585		ChiTaRS3.1			DA556158	HSPB6	chr19	36246433	-	AKT1	chr14	105239870	-
intron-3UTR	ENST00000299427	ENST00000358598		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000299427	ENST00000392711		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000299427	ENST00000589228		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000299427	ENST00000536854		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000299427	ENST00000586397		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000299427	ENST00000588188		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000533371	ENST00000358598		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000533371	ENST00000392711		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000533371	ENST00000589228		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000533371	ENST00000536854		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000533371	ENST00000586397		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000533371	ENST00000588188		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000534644	ENST00000358598		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000534644	ENST00000392711		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000534644	ENST00000589228		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000534644	ENST00000536854		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000534644	ENST00000586397		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000534644	ENST00000588188		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000528657	ENST00000358598		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000528657	ENST00000392711		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000528657	ENST00000589228		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-3UTR	ENST00000528657	ENST00000536854		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000528657	ENST00000586397		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000528657	ENST00000588188		ChiTaRS3.1			AV751006	TPP1	chr11	6635224	-	PRKAR1A	chr17	66527556	+
intron-intron	ENST00000509990	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000509990	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000509990	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000361059	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000361059	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000361059	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000504203	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000504203	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000504203	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502929	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502929	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502929	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394800	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394800	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394800	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000507197	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000507197	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000507197	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394805	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394805	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000394805	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502499	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502499	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000502499	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000510056	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000510056	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000510056	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000503811	ENST00000332981		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000503811	ENST00000555082		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
intron-intron	ENST00000503811	ENST00000556245		ChiTaRS3.1			CV382561	MATR3	chr5	138648360	+	PRKCH	chr14	61782536	-
5CDS-3UTR	ENST00000266088	ENST00000480945		ChiTaRS3.1			AA343515	SLC5A1	chr22	32477959	+	DDI2	chr1	15994589	+
5CDS-3UTR	ENST00000543737	ENST00000480945		ChiTaRS3.1			AA343515	SLC5A1	chr22	32477959	+	DDI2	chr1	15994589	+
5CDS-intron	ENST00000256442	ENST00000301831		ChiTaRS3.1			BI042340	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
5CDS-intron	ENST00000256442	ENST00000420927		ChiTaRS3.1			BI042340	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
5CDS-intron	ENST00000256442	ENST00000489118		ChiTaRS3.1			BI042340	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
5CDS-intron	ENST00000256442	ENST00000414606		ChiTaRS3.1			BI042340	CCNB1	chr5	68467260	+	ULK4	chr3	41358073	-
In-frame	ENST00000366932	ENST00000404233		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
In-frame	ENST00000366932	ENST00000529972		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
In-frame	ENST00000366932	ENST00000525859		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
In-frame	ENST00000366932	ENST00000543287		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
3UTR-3CDS	ENST00000491428	ENST00000404233		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
3UTR-3CDS	ENST00000491428	ENST00000529972		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
3UTR-3CDS	ENST00000491428	ENST00000525859		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
3UTR-3CDS	ENST00000491428	ENST00000543287		ChiTaRS3.1			BP245517	RRP15	chr1	218475901	+	HYOU1	chr11	118923144	-
In-frame	ENST00000359139	ENST00000376929		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000359139	ENST00000506690		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000359139	ENST00000389805		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000359139	ENST00000402874		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000359139	ENST00000510187		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000359139	ENST00000360718		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
In-frame	ENST00000395741	ENST00000376929		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395741	ENST00000506690		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395741	ENST00000389805		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395741	ENST00000402874		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395741	ENST00000510187		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395741	ENST00000360718		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
In-frame	ENST00000395744	ENST00000376929		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395744	ENST00000506690		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395744	ENST00000389805		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395744	ENST00000402874		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395744	ENST00000510187		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000395744	ENST00000360718		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
In-frame	ENST00000216061	ENST00000376929		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000216061	ENST00000506690		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000216061	ENST00000389805		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000216061	ENST00000402874		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000216061	ENST00000510187		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
5CDS-intron	ENST00000216061	ENST00000360718		ChiTaRS3.1			CF127724	PPP6R2	chr22	50877126	+	SQSTM1	chr5	179250921	+
intron-5UTR	ENST00000576906	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000576906	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000576906	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000576906	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000576906	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-5UTR	ENST00000407558	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-5UTR	ENST00000407558	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-intron	ENST00000407558	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-intron	ENST00000407558	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-intron	ENST00000407558	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-5UTR	ENST00000608722	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-5UTR	ENST00000608722	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-intron	ENST00000608722	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-intron	ENST00000608722	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5UTR-intron	ENST00000608722	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5CDS-5UTR	ENST00000424546	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5CDS-5UTR	ENST00000424546	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5CDS-intron	ENST00000424546	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5CDS-intron	ENST00000424546	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
5CDS-intron	ENST00000424546	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000573580	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000573580	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000573580	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000573580	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000573580	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000421765	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000421765	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000421765	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000421765	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000421765	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000610180	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000610180	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000610180	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000610180	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000610180	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000608993	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000608993	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000608993	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000608993	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000608993	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000360862	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000360862	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000360862	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000360862	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000360862	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000414063	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000414063	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000414063	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000414063	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000414063	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000570551	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000570551	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000570551	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000570551	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000570551	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000572942	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000572942	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000572942	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000572942	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000572942	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000576916	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000576916	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000576916	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000576916	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000576916	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000575076	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000575076	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000575076	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000575076	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000575076	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000577013	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000577013	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000577013	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000577013	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000577013	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000570819	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000570819	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000570819	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000570819	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000570819	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000572584	ENST00000368882		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-5UTR	ENST00000572584	ENST00000368885		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000572584	ENST00000451850		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000572584	ENST00000368877		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
intron-intron	ENST00000572584	ENST00000368876		ChiTaRS3.1			BI770432	NAA60	chr16	3498540	+	AMD1	chr6	111213364	+
3UTR-3CDS	ENST00000358293	ENST00000369144		ChiTaRS3.1			AU117098	FAM217B	chr20	58522021	+	EIF3A	chr10	120801572	-
3UTR-3CDS	ENST00000358293	ENST00000541549		ChiTaRS3.1			AU117098	FAM217B	chr20	58522021	+	EIF3A	chr10	120801572	-
3UTR-3CDS	ENST00000360816	ENST00000369144		ChiTaRS3.1			AU117098	FAM217B	chr20	58522021	+	EIF3A	chr10	120801572	-
3UTR-3CDS	ENST00000360816	ENST00000541549		ChiTaRS3.1			AU117098	FAM217B	chr20	58522021	+	EIF3A	chr10	120801572	-
intron-3CDS	ENST00000469084	ENST00000369144		ChiTaRS3.1			AU117098	FAM217B	chr20	58522021	+	EIF3A	chr10	120801572	-
intron-3CDS	ENST00000469084	ENST00000541549		ChiTaRS3.1			AU117098	FAM217B	chr20	58522021	+	EIF3A	chr10	120801572	-
5CDS-3UTR	ENST00000355029	ENST00000262919		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
5CDS-intron	ENST00000355029	ENST00000446916		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
5UTR-3UTR	ENST00000542715	ENST00000262919		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
5UTR-intron	ENST00000542715	ENST00000446916		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
5CDS-3UTR	ENST00000380359	ENST00000262919		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
5CDS-intron	ENST00000380359	ENST00000446916		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
intron-3UTR	ENST00000484741	ENST00000262919		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
intron-intron	ENST00000484741	ENST00000446916		ChiTaRS3.1			AA452049	NET1	chr10	5494380	+	ATRN	chr20	3629507	+
intron-intron	ENST00000553221	ENST00000407479		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-5UTR	ENST00000553221	ENST00000246949		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000553221	ENST00000414110		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000553221	ENST00000575152		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000257910	ENST00000407479		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-5UTR	ENST00000257910	ENST00000246949		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000257910	ENST00000414110		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000257910	ENST00000575152		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000547992	ENST00000407479		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-5UTR	ENST00000547992	ENST00000246949		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000547992	ENST00000414110		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000547992	ENST00000575152		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000547472	ENST00000407479		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-5UTR	ENST00000547472	ENST00000246949		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000547472	ENST00000414110		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000547472	ENST00000575152		ChiTaRS3.1			AA811975	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-5UTR	ENST00000376006	ENST00000358746		ChiTaRS3.1			AU125362	NUDT10	chrX	51079353	+	TTC37	chr5	94890681	-
3UTR-intron	ENST00000376006	ENST00000515176		ChiTaRS3.1			AU125362	NUDT10	chrX	51079353	+	TTC37	chr5	94890681	-
3UTR-5UTR	ENST00000356450	ENST00000358746		ChiTaRS3.1			AU125362	NUDT10	chrX	51079353	+	TTC37	chr5	94890681	-
3UTR-intron	ENST00000356450	ENST00000515176		ChiTaRS3.1			AU125362	NUDT10	chrX	51079353	+	TTC37	chr5	94890681	-
3UTR-intron	ENST00000361951	ENST00000217195		ChiTaRS3.1			AK022713	DARS2	chr1	173827030	+	C20orf27	chr20	3748401	-
3UTR-5UTR	ENST00000361951	ENST00000379772		ChiTaRS3.1			AK022713	DARS2	chr1	173827030	+	C20orf27	chr20	3748401	-
3UTR-intron	ENST00000239457	ENST00000217195		ChiTaRS3.1			AK022713	DARS2	chr1	173827030	+	C20orf27	chr20	3748401	-
3UTR-5UTR	ENST00000239457	ENST00000379772		ChiTaRS3.1			AK022713	DARS2	chr1	173827030	+	C20orf27	chr20	3748401	-
intron-intron	ENST00000471476	ENST00000217195		ChiTaRS3.1			AK022713	DARS2	chr1	173827030	+	C20orf27	chr20	3748401	-
intron-5UTR	ENST00000471476	ENST00000379772		ChiTaRS3.1			AK022713	DARS2	chr1	173827030	+	C20orf27	chr20	3748401	-
5CDS-3UTR	ENST00000406925	ENST00000343139		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000395363		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-3UTR	ENST00000406925	ENST00000374949		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000457246		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000453504		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000442315		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000450960		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000466849		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000456258		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000450614		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000441297		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000463379		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000420385		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000383251		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000548014		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000399678		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000399675		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000451947		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000443320		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000416403		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000442680		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000498769		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000550158		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000548597		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000418023		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000552932		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000547425		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000406925	ENST00000444296		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-3UTR	ENST00000498605	ENST00000343139		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000395363		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-3UTR	ENST00000498605	ENST00000374949		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000457246		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000453504		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000442315		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000450960		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000466849		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000456258		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000450614		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000441297		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000463379		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000420385		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000383251		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000548014		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000399678		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000399675		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000451947		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000443320		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000416403		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000442680		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000498769		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000550158		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000548597		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000418023		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000552932		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000547425		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
3UTR-intron	ENST00000498605	ENST00000444296		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-3UTR	ENST00000442995	ENST00000343139		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000395363		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-3UTR	ENST00000442995	ENST00000374949		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000457246		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000453504		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000442315		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000450960		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000466849		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000456258		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000450614		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000441297		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000463379		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000420385		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000383251		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000548014		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000399678		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000399675		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000451947		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000443320		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000416403		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000442680		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000498769		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000550158		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000548597		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000418023		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000552932		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000547425		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000442995	ENST00000444296		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-3UTR	ENST00000458412	ENST00000343139		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000395363		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-3UTR	ENST00000458412	ENST00000374949		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000457246		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000453504		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000442315		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000450960		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000466849		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000456258		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000450614		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000441297		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000463379		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000420385		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000383251		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000548014		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000399678		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000399675		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000451947		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000443320		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000416403		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000442680		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000498769		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000550158		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000548597		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000418023		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000552932		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000547425		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-intron	ENST00000458412	ENST00000444296		ChiTaRS3.1			CA307230	HYPK	chr15	44092888	-	HLA-DQA1	chr6	32610755	-
5CDS-3UTR	ENST00000358161	ENST00000341441		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000358161	ENST00000378576		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000358161	ENST00000416162		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000358161	ENST00000393187		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000358161	ENST00000223215		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000358161	ENST00000437945		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-intron	ENST00000358161	ENST00000462132		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372739	ENST00000341441		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372739	ENST00000378576		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372739	ENST00000416162		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372739	ENST00000393187		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372739	ENST00000223215		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372739	ENST00000437945		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-intron	ENST00000372739	ENST00000462132		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372731	ENST00000341441		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372731	ENST00000378576		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372731	ENST00000416162		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372731	ENST00000393187		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372731	ENST00000223215		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-3UTR	ENST00000372731	ENST00000437945		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
5CDS-intron	ENST00000372731	ENST00000462132		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-3UTR	ENST00000475367	ENST00000341441		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-3UTR	ENST00000475367	ENST00000378576		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-3UTR	ENST00000475367	ENST00000416162		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-3UTR	ENST00000475367	ENST00000393187		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-3UTR	ENST00000475367	ENST00000223215		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-3UTR	ENST00000475367	ENST00000437945		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-intron	ENST00000475367	ENST00000462132		ChiTaRS3.1			AA368620	SPTAN1	chr9	131353900	+	MEST	chr7	130145187	+
intron-intron	ENST00000466411	ENST00000346145		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
intron-intron	ENST00000466411	ENST00000349607		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
intron-intron	ENST00000466411	ENST00000463781		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
intron-intron	ENST00000466411	ENST00000475231		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
intron-intron	ENST00000466411	ENST00000478685		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000435050	ENST00000346145		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000435050	ENST00000349607		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000435050	ENST00000463781		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000435050	ENST00000475231		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000435050	ENST00000478685		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000431918	ENST00000346145		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000431918	ENST00000349607		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000431918	ENST00000463781		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000431918	ENST00000475231		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000431918	ENST00000478685		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000340958	ENST00000346145		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000340958	ENST00000349607		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000340958	ENST00000463781		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000340958	ENST00000475231		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
5CDS-intron	ENST00000340958	ENST00000478685		ChiTaRS3.1			BG984966	CLDN4	chr7	73245980	+	MUC4	chr3	195516593	-
3UTR-intron	ENST00000405995	ENST00000453363		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000405995	ENST00000316193		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000405995	ENST00000329882		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000357304	ENST00000453363		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000357304	ENST00000316193		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000357304	ENST00000329882		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000458550	ENST00000453363		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000458550	ENST00000316193		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000458550	ENST00000329882		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000372249	ENST00000453363		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000372249	ENST00000316193		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000372249	ENST00000329882		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000465931	ENST00000453363		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000465931	ENST00000316193		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
3UTR-intron	ENST00000465931	ENST00000329882		ChiTaRS3.1			AA368572	PRRC2B	chr9	134375457	-	CSH1	chr17	61973197	-
intron-intron	ENST00000464527	ENST00000328913		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000473233		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000447025		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000414362		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000464527	ENST00000468976		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000328913		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000473233		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000447025		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000414362		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000445927	ENST00000468976		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000328913		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000473233		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000447025		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000414362		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000294947	ENST00000468976		ChiTaRS3.1			AI742743	C2orf61	chr2	47387684	-	MCF2L2	chr3	182988389	+
intron-intron	ENST00000255631	ENST00000534307		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000528302		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000255631	ENST00000322535		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000534307		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000528302		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000433386	ENST00000322535		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000534307		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000528302		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000376343	ENST00000322535		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000534307		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000528302		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
intron-intron	ENST00000587922	ENST00000322535		ChiTaRS3.1			BQ898162	HSPBP1	chr19	55790975	-	SF3B2	chr11	65828125	+
3UTR-intron	ENST00000368324	ENST00000405805		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
3UTR-intron	ENST00000368324	ENST00000339872		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
3UTR-intron	ENST00000368324	ENST00000341423		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
3UTR-intron	ENST00000368324	ENST00000399489		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
3UTR-intron	ENST00000368324	ENST00000399494		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
3UTR-intron	ENST00000368324	ENST00000326004		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
3UTR-intron	ENST00000368324	ENST00000468384		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000405805		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000339872		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000341423		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000399489		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000399494		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000326004		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-intron	ENST00000539162	ENST00000468384		ChiTaRS3.1			D38522	SYT11	chr1	155854061	+	HMGB1	chr13	31110473	-
intron-3CDS	ENST00000282507	ENST00000335295		ChiTaRS3.1			BE843851	UGT3A2	chr5	36035622	-	HBB	chr11	5246907	-
intron-3CDS	ENST00000513300	ENST00000335295		ChiTaRS3.1			BE843851	UGT3A2	chr5	36035622	-	HBB	chr11	5246907	-
intron-3CDS	ENST00000545528	ENST00000335295		ChiTaRS3.1			BE843851	UGT3A2	chr5	36035622	-	HBB	chr11	5246907	-
intron-3CDS	ENST00000504954	ENST00000335295		ChiTaRS3.1			BE843851	UGT3A2	chr5	36035622	-	HBB	chr11	5246907	-
In-frame	ENST00000370179	ENST00000380358		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
In-frame	ENST00000370179	ENST00000358181		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
In-frame	ENST00000370179	ENST00000330494		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
5CDS-intron	ENST00000370179	ENST00000570758		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
Frame-shit	ENST00000370177	ENST00000380358		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
Frame-shit	ENST00000370177	ENST00000358181		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
Frame-shit	ENST00000370177	ENST00000330494		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
5CDS-intron	ENST00000370177	ENST00000570758		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
3UTR-3CDS	ENST00000473620	ENST00000380358		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
3UTR-3CDS	ENST00000473620	ENST00000358181		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
3UTR-3CDS	ENST00000473620	ENST00000330494		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
3UTR-intron	ENST00000473620	ENST00000570758		ChiTaRS3.1			DC377192	PPDPF	chr20	62153141	+	CHD3	chr17	7804634	+
3UTR-3UTR	ENST00000371084	ENST00000298875		ChiTaRS3.1			AI830657	PGM1	chr1	64125741	-	CPSF2	chr14	92629119	-
3UTR-3UTR	ENST00000540265	ENST00000298875		ChiTaRS3.1			AI830657	PGM1	chr1	64125741	-	CPSF2	chr14	92629119	-
3UTR-3UTR	ENST00000371083	ENST00000298875		ChiTaRS3.1			AI830657	PGM1	chr1	64125741	-	CPSF2	chr14	92629119	-
intron-3UTR	ENST00000483707	ENST00000298875		ChiTaRS3.1			AI830657	PGM1	chr1	64125741	-	CPSF2	chr14	92629119	-
intron-3UTR	ENST00000264018	ENST00000265062		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-intron	ENST00000264018	ENST00000482525		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-intron	ENST00000264018	ENST00000485280		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-3UTR	ENST00000534980	ENST00000265062		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-intron	ENST00000534980	ENST00000482525		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-intron	ENST00000534980	ENST00000485280		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-3UTR	ENST00000526070	ENST00000265062		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-intron	ENST00000526070	ENST00000482525		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-intron	ENST00000526070	ENST00000485280		ChiTaRS3.1			BC065007	DDX6	chr11	118622042	-	RAB7A	chr3	128533579	+
intron-3CDS	ENST00000409869	ENST00000282488		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000282486		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000355460		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000493459		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000324210		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000498502		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000545754		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000357472		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000324196		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000485910		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000463374		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000492948		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000409869	ENST00000485509		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-intron	ENST00000409869	ENST00000461436		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000282488		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000282486		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000355460		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000493459		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000324210		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000498502		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000545754		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000357472		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000324196		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000485910		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000463374		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000492948		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
In-frame	ENST00000295095	ENST00000485509		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
5CDS-intron	ENST00000295095	ENST00000461436		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000282488		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000282486		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000355460		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000493459		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000324210		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000498502		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000545754		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000357472		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000324196		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000485910		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000463374		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000492948		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-3CDS	ENST00000473426	ENST00000485509		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-intron	ENST00000473426	ENST00000461436		ChiTaRS3.1			AL832395	ARHGAP15	chr2	144008170	+	MBNL1	chr3	152132728	+
intron-intron	ENST00000553781	ENST00000575270		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000349223		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000329524		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000346183		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000535127		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-intron	ENST00000557008	ENST00000575270		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000349223		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000329524		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000346183		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000535127		ChiTaRS3.1			BF895698	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-intron	ENST00000382582	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000382582	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000355994	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000355994	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397875	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397875	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397866	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397866	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397865	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397865	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000527041	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000527041	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000359645	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000359645	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000528160	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000528160	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397869	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397869	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000354542	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000354542	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000526111	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000526111	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000580402	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000580402	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000579129	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000579129	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000578193	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000578193	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397863	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397863	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397860	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000397860	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000487778	ENST00000483295		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
intron-intron	ENST00000487778	ENST00000235382		ChiTaRS3.1			CD558589	MBP	chr18	74724750	-	RGS2	chr1	192780233	+
Frame-shit	ENST00000313654	ENST00000313654		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000399516		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000269217		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000587184		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000313654	ENST00000588770		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000313654		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000399516		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000269217		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000587184		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000399516	ENST00000588770		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000313654		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000399516		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000269217		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000587184		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000269217	ENST00000588770		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000313654		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000399516		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000269217		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000587184		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000587184	ENST00000588770		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000313654		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000399516		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000269217		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000587184		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3UTR	ENST00000588770	ENST00000588770		ChiTaRS3.1			AW578484	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
intron-3CDS	ENST00000435085	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000435085	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000435085	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000435085	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000307198	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000307198	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000307198	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000307198	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000419228	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000419228	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000419228	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000419228	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000447974	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000447974	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000447974	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000447974	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000289488	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000289488	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000289488	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000289488	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000539271	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000539271	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000539271	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000539271	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000423494	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000423494	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000423494	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000423494	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000539587	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000539587	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000539587	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000539587	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000538478	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000538478	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000538478	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000538478	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000324866	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000324866	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000324866	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000324866	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000439209	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000439209	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000439209	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000439209	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000541614	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000541614	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000541614	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000541614	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000536917	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000536917	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000536917	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000536917	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000440313	ENST00000405636		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3CDS	ENST00000440313	ENST00000252487		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000440313	ENST00000592434		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000440313	ENST00000426677		ChiTaRS3.1			AW873110	LRTOMT	chr11	71808652	+	TOMM40	chr19	45406319	-
intron-3UTR	ENST00000341657	ENST00000493902		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000341657	ENST00000394998		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000341657	ENST00000313843		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000570535	ENST00000493902		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000570535	ENST00000394998		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000570535	ENST00000313843		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000574367	ENST00000493902		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000574367	ENST00000394998		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000574367	ENST00000313843		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000573722	ENST00000493902		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000573722	ENST00000394998		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000573722	ENST00000313843		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000433651	ENST00000493902		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000433651	ENST00000394998		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3UTR	ENST00000433651	ENST00000313843		ChiTaRS3.1			BG540772	ANKFY1	chr17	4163512	-	STX4	chr16	31045632	+
intron-3CDS	ENST00000489520	ENST00000416293		ChiTaRS3.1			S80262	RPSAP52	chr12	66232351	+	ALDH2	chr12	112247346	+
intron-3CDS	ENST00000489520	ENST00000261733		ChiTaRS3.1			S80262	RPSAP52	chr12	66232351	+	ALDH2	chr12	112247346	+
5UTR-5UTR	ENST00000009041	ENST00000230859		ChiTaRS3.1			DA247530	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5UTR-5UTR	ENST00000544203	ENST00000230859		ChiTaRS3.1			DA247530	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5UTR-5UTR	ENST00000434197	ENST00000230859		ChiTaRS3.1			DA247530	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5UTR-5UTR	ENST00000396013	ENST00000230859		ChiTaRS3.1			DA247530	STARD3NL	chr7	38218022	+	PAPD7	chr5	6737621	+
5CDS-3UTR	ENST00000380833	ENST00000346798		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000354192		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000348990		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000357903		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000358918		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000359726		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000448388		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000440126		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380833	ENST00000439274		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-intron	ENST00000380833	ENST00000474136		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000346798		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000354192		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000348990		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000357903		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000358918		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000359726		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000448388		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000440126		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000380829	ENST00000439274		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-intron	ENST00000380829	ENST00000474136		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000346798		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000354192		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000348990		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000357903		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000358918		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000359726		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000448388		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000440126		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-3UTR	ENST00000421085	ENST00000439274		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
5CDS-intron	ENST00000421085	ENST00000474136		ChiTaRS3.1			AV728963	CLCN4	chrX	10166101	+	APP	chr21	27253883	-
3UTR-5UTR	ENST00000372797	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372797	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372797	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-intron	ENST00000372797	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372802	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372802	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372802	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-intron	ENST00000372802	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000372792	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000372792	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000372792	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-intron	ENST00000372792	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000372798	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000372798	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000372798	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-intron	ENST00000372798	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000340450	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000340450	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000340450	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-intron	ENST00000340450	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372805	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372805	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-5UTR	ENST00000372805	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-intron	ENST00000372805	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000479759	ENST00000380262		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000479759	ENST00000563694		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-5UTR	ENST00000479759	ENST00000380255		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
intron-intron	ENST00000479759	ENST00000565740		ChiTaRS3.1			BE504885	CAP1	chr1	40537712	-	CNTROB	chr17	7835670	-
3UTR-intron	ENST00000341942	ENST00000332408		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000341942	ENST00000396535		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000341942	ENST00000537958		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000441173	ENST00000332408		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000441173	ENST00000396535		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000441173	ENST00000537958		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000468582	ENST00000332408		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000468582	ENST00000396535		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
3UTR-intron	ENST00000468582	ENST00000537958		ChiTaRS3.1			BU928399	LAMTOR4	chr7	99751600	+	SHC4	chr15	49170715	+
intron-5UTR	ENST00000364849	ENST00000402744		ChiTaRS3.1			DC314895	SNHG6	chr8	67834709	-	CPE	chr4	166300231	+
intron-3CDS	ENST00000389153	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000389153	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000608853	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000608853	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000377617	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000377617	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000550104	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000550104	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000542287	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000542287	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000535949	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000535949	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000549455	ENST00000378308		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000549455	ENST00000324545		ChiTaRS3.1			BF448141	ATXN2	chr12	111890313	+	USP9X	chrX	41091694	-
intron-3CDS	ENST00000383329	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383329	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383329	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383329	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000376228	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000376228	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000376228	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000376228	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000423509	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000423509	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000423509	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000423509	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000430940	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000430940	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000430940	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000430940	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000422726	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000422726	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000422726	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000422726	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000424832	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000424832	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000424832	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000424832	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000458192	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000458192	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000458192	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000458192	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000422921	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000422921	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000422921	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000422921	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000456487	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000456487	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000456487	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000456487	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000420206	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000420206	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000420206	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000420206	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000495725	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000495725	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000495725	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000495725	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000419135	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000419135	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000419135	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000419135	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000433153	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000433153	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000433153	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000433153	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000429840	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000429840	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000429840	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000429840	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000457903	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000457903	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000457903	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000457903	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000479546	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000479546	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000479546	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000479546	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000400395	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000400395	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000400395	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000400395	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383323	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383323	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383323	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383323	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000434884	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000434884	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000434884	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000434884	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000400394	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000400394	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000400394	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000400394	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000494871	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000494871	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000494871	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000494871	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000453809	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000453809	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000453809	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000453809	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000414249	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000414249	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000414249	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000414249	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000419590	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000419590	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000419590	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000419590	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000438171	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000438171	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000438171	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000438171	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000552865	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000552865	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000552865	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000552865	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000495898	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000495898	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000495898	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000495898	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383483	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383483	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383483	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383483	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383487	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000383487	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383487	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000383487	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000458668	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000458668	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000458668	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000458668	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000400341	ENST00000216281		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-3CDS	ENST00000400341	ENST00000334701		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000400341	ENST00000441629		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
intron-intron	ENST00000400341	ENST00000558600		ChiTaRS3.1			CK003121	HLA-C	chr6	2751388	-	HSP90AA1	chr14	102552707	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU216071	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU216071	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU216071	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU216071	BCR	chr22	23632600	+	ABL1	chr9	133729451	+
intron-intron	ENST00000426455	ENST00000494318		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000426455	ENST00000354370		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000426455	ENST00000396423		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000394018	ENST00000494318		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000394018	ENST00000354370		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000394018	ENST00000396423		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000317296	ENST00000494318		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000317296	ENST00000354370		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000317296	ENST00000396423		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000440830	ENST00000494318		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000440830	ENST00000354370		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
intron-intron	ENST00000440830	ENST00000396423		ChiTaRS3.1			BF512011	STAG3	chr7	99820284	+	HNF4G	chr8	76355455	+
In-frame	ENST00000399788	ENST00000382582		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000355994		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000397875		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000397866		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000397865		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000527041		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000359645		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000528160		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000397869		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000354542		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000526111		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000580402		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000579129		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000578193		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000397863		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000397860		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000487778		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000382582		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000355994		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000397875		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000397866		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000397865		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000527041		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000359645		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000528160		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000397869		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000354542		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000526111		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000580402		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000579129		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000578193		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000397863		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000397860		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000487778		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000382582		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000355994		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000397875		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000397866		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000397865		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000527041		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000359645		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000528160		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000397869		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000354542		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000526111		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000580402		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000579129		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000578193		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000397863		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000397860		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000487778		ChiTaRS3.1			DB177382	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-5UTR	ENST00000598312	ENST00000400098		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000598312	ENST00000400100		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000598312	ENST00000400097		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-3UTR	ENST00000598312	ENST00000553597		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000598312	ENST00000390687		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000598312	ENST00000346403		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000598312	ENST00000554227		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000598312	ENST00000577565		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-intron	ENST00000598312	ENST00000444203		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000400098		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000400100		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000400097		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-3UTR	ENST00000358067	ENST00000553597		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000390687		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000346403		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000554227		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-5UTR	ENST00000358067	ENST00000577565		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
intron-intron	ENST00000358067	ENST00000444203		ChiTaRS3.1			CD512958	ZNF329	chr19	58666099	-	SNRPN	chr15	25213077	+
5UTR-3CDS	ENST00000269214	ENST00000262370		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000269214	ENST00000415496		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000269214	ENST00000399577		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000269214	ENST00000588994		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000269214	ENST00000586183		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-intron	ENST00000269214	ENST00000588015		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000580101	ENST00000262370		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000580101	ENST00000415496		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000580101	ENST00000399577		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000580101	ENST00000588994		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-3CDS	ENST00000580101	ENST00000586183		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
5UTR-intron	ENST00000580101	ENST00000588015		ChiTaRS3.1			BU161418	ESCO1	chr18	19180583	-	MGRN1	chr16	4700364	+
In-frame	ENST00000278826	ENST00000496972		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000405222		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000407661		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000406818		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000407038		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000404103		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000407186		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000288642		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000545439		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5CDS-intron	ENST00000278826	ENST00000472690		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000496972		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000405222		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000407661		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000406818		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000407038		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000404103		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000407186		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000288642		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000545439		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5CDS-intron	ENST00000542946	ENST00000472690		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000496972		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000405222		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000407661		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000406818		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000407038		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000404103		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000407186		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000288642		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000545439		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-intron	ENST00000540194	ENST00000472690		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000496972		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000405222		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000407661		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000406818		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000407038		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000404103		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000407186		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000288642		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000545439		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5CDS-intron	ENST00000381787	ENST00000472690		ChiTaRS3.1			BQ057316	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
Frame-shit	ENST00000588427	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000588427	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000436106	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000436106	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000588871	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000588871	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
intron-3CDS	ENST00000427685	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
intron-3CDS	ENST00000427685	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
In-frame	ENST00000588849	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
In-frame	ENST00000588849	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
In-frame	ENST00000586564	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
In-frame	ENST00000586564	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
In-frame	ENST00000592872	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
In-frame	ENST00000592872	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000585675	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
Frame-shit	ENST00000585675	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
5UTR-3CDS	ENST00000591027	ENST00000248071		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
5UTR-3CDS	ENST00000591027	ENST00000592003		ChiTaRS3.1			AJ713185	C19orf25	chr19	1478771	-	KLF2	chr19	16437665	+
intron-3UTR	ENST00000264659	ENST00000303329		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-3UTR	ENST00000264659	ENST00000533983		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-intron	ENST00000264659	ENST00000527771		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-intron	ENST00000264659	ENST00000531595		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-3UTR	ENST00000578925	ENST00000303329		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-3UTR	ENST00000578925	ENST00000533983		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-intron	ENST00000578925	ENST00000527771		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-intron	ENST00000578925	ENST00000531595		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-3UTR	ENST00000398579	ENST00000303329		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-3UTR	ENST00000398579	ENST00000533983		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-intron	ENST00000398579	ENST00000527771		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-intron	ENST00000398579	ENST00000531595		ChiTaRS3.1			DA768778	SRCIN1	chr17	36688422	-	ARNT2	chr15	80887005	+
intron-5UTR	ENST00000371743	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000371743	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000371743	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000450535	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000450535	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000450535	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000441722	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000441722	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000441722	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000417721	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000417721	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000417721	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000458653	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000458653	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000458653	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000326677	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000326677	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000326677	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000428008	ENST00000402696		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-5UTR	ENST00000428008	ENST00000264998		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-intron	ENST00000428008	ENST00000475382		ChiTaRS3.1			DA338823	ZFAS1	chr20	47896939	+	TF	chr3	133465239	+
intron-3CDS	ENST00000536255	ENST00000200457		ChiTaRS3.1			M69039	RPAIN	chr17	5336101	-	TRIP6	chr7	100470919	+
3UTR-3CDS	ENST00000381208	ENST00000200457		ChiTaRS3.1			M69039	RPAIN	chr17	5336101	-	TRIP6	chr7	100470919	+
3UTR-3CDS	ENST00000381209	ENST00000200457		ChiTaRS3.1			M69039	RPAIN	chr17	5336101	-	TRIP6	chr7	100470919	+
intron-3CDS	ENST00000327154	ENST00000200457		ChiTaRS3.1			M69039	RPAIN	chr17	5336101	-	TRIP6	chr7	100470919	+
intron-3CDS	ENST00000405578	ENST00000200457		ChiTaRS3.1			M69039	RPAIN	chr17	5336101	-	TRIP6	chr7	100470919	+
intron-3CDS	ENST00000574003	ENST00000200457		ChiTaRS3.1			M69039	RPAIN	chr17	5336101	-	TRIP6	chr7	100470919	+
5UTR-5UTR	ENST00000254066	ENST00000396418		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
5UTR-intron	ENST00000254066	ENST00000352966		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
5UTR-intron	ENST00000254066	ENST00000518467		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-5UTR	ENST00000394089	ENST00000396418		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000394089	ENST00000352966		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000394089	ENST00000518467		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-5UTR	ENST00000425707	ENST00000396418		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000425707	ENST00000352966		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000425707	ENST00000518467		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-5UTR	ENST00000394086	ENST00000396418		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000394086	ENST00000352966		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000394086	ENST00000518467		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-5UTR	ENST00000394081	ENST00000396418		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000394081	ENST00000352966		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000394081	ENST00000518467		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-5UTR	ENST00000420042	ENST00000396418		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000420042	ENST00000352966		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000420042	ENST00000518467		ChiTaRS3.1			XX000008	RARA	chr17	38465538	+	PKIA	chr8	79485043	+
intron-intron	ENST00000524622	ENST00000033079		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000524622	ENST00000425075		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000524622	ENST00000420893		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000532804	ENST00000033079		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000532804	ENST00000425075		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000532804	ENST00000420893		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000449076	ENST00000033079		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000449076	ENST00000425075		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000449076	ENST00000420893		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000316577	ENST00000033079		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000316577	ENST00000425075		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000316577	ENST00000420893		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000531122	ENST00000033079		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000531122	ENST00000425075		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000531122	ENST00000420893		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000524959	ENST00000033079		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000524959	ENST00000425075		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
intron-intron	ENST00000524959	ENST00000420893		ChiTaRS3.1			DA241897	TESPA1	chr12	55357560	-	FAM13B	chr5	137314508	-
5CDS-intron	ENST00000298229	ENST00000298229		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000298229	ENST00000541756		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000298229	ENST00000538751		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000541756	ENST00000298229		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000541756	ENST00000541756		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000541756	ENST00000538751		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000538751	ENST00000298229		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000538751	ENST00000541756		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
5CDS-intron	ENST00000538751	ENST00000538751		ChiTaRS3.1			BE280713	INPPL1	chr11	71946231	+	INPPL1	chr11	71946248	-
Frame-shit	ENST00000379151	ENST00000263125		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000397176		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000379151	ENST00000539722		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000263125		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000397176		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000361121	ENST00000539722		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000263125		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000397176		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000357537	ENST00000539722		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000263125		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000397176		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
intron-3CDS	ENST00000473119	ENST00000539722		ChiTaRS3.1			DB492326	GPALPP1	chr13	45563879	+	PRKCQ	chr10	6521128	-
Frame-shit	ENST00000297071	ENST00000473706		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
Frame-shit	ENST00000297071	ENST00000380834		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
Frame-shit	ENST00000297071	ENST00000260662		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5CDS-intron	ENST00000297071	ENST00000395845		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-3CDS	ENST00000392502	ENST00000473706		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-3CDS	ENST00000392502	ENST00000380834		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-3CDS	ENST00000392502	ENST00000260662		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-intron	ENST00000392502	ENST00000395845		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-3CDS	ENST00000538367	ENST00000473706		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-3CDS	ENST00000538367	ENST00000380834		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-3CDS	ENST00000538367	ENST00000260662		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5UTR-intron	ENST00000538367	ENST00000395845		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
intron-3CDS	ENST00000474586	ENST00000473706		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
intron-3CDS	ENST00000474586	ENST00000380834		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
intron-3CDS	ENST00000474586	ENST00000260662		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
intron-intron	ENST00000474586	ENST00000395845		ChiTaRS3.1			BQ214674	TRA2A	chr7	23571405	-	CENPO	chr2	25022544	+
5CDS-intron	ENST00000254803	ENST00000376929		ChiTaRS3.1			BP276289	UTP3	chr4	71554448	+	SQSTM1	chr5	179248080	+
5CDS-intron	ENST00000254803	ENST00000506690		ChiTaRS3.1			BP276289	UTP3	chr4	71554448	+	SQSTM1	chr5	179248080	+
5CDS-intron	ENST00000254803	ENST00000389805		ChiTaRS3.1			BP276289	UTP3	chr4	71554448	+	SQSTM1	chr5	179248080	+
5CDS-5UTR	ENST00000254803	ENST00000402874		ChiTaRS3.1			BP276289	UTP3	chr4	71554448	+	SQSTM1	chr5	179248080	+
5CDS-5UTR	ENST00000254803	ENST00000510187		ChiTaRS3.1			BP276289	UTP3	chr4	71554448	+	SQSTM1	chr5	179248080	+
5CDS-intron	ENST00000254803	ENST00000360718		ChiTaRS3.1			BP276289	UTP3	chr4	71554448	+	SQSTM1	chr5	179248080	+
intron-intron	ENST00000412585	ENST00000452733		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-3UTR	ENST00000412585	ENST00000427476		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-intron	ENST00000425848	ENST00000452733		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-3UTR	ENST00000425848	ENST00000427476		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-intron	ENST00000450871	ENST00000452733		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-3UTR	ENST00000450871	ENST00000427476		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-intron	ENST00000359635	ENST00000452733		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-3UTR	ENST00000359635	ENST00000427476		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-intron	ENST00000435618	ENST00000452733		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-3UTR	ENST00000435618	ENST00000427476		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-intron	ENST00000421349	ENST00000452733		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
intron-3UTR	ENST00000421349	ENST00000427476		ChiTaRS3.1			AW843252	HLA-B	chr6	31322427	-	CYTH2	chr19	48984538	+
Frame-shit	ENST00000310144	ENST00000327040		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000310144	ENST00000440756		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000310144	ENST00000286485		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000310144	ENST00000428502		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000310144	ENST00000523619		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000310144	ENST00000520789		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
intron-3CDS	ENST00000582420	ENST00000327040		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
intron-3CDS	ENST00000582420	ENST00000440756		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
intron-intron	ENST00000582420	ENST00000286485		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
intron-intron	ENST00000582420	ENST00000428502		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
intron-intron	ENST00000582420	ENST00000523619		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
intron-intron	ENST00000582420	ENST00000520789		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000580864	ENST00000327040		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000580864	ENST00000440756		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000580864	ENST00000286485		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000580864	ENST00000428502		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000580864	ENST00000523619		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000580864	ENST00000520789		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000375812	ENST00000327040		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000375812	ENST00000440756		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000375812	ENST00000286485		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000375812	ENST00000428502		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000375812	ENST00000523619		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000375812	ENST00000520789		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000581882	ENST00000327040		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
Frame-shit	ENST00000581882	ENST00000440756		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000581882	ENST00000286485		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000581882	ENST00000428502		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000581882	ENST00000523619		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5CDS-intron	ENST00000581882	ENST00000520789		ChiTaRS3.1			CK725100	PSMC5	chr17	61909127	-	PSD3	chr8	18725438	+
5UTR-3UTR	ENST00000323688	ENST00000588752		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-5UTR	ENST00000323688	ENST00000589238		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-5UTR	ENST00000323688	ENST00000269159		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-5UTR	ENST00000323688	ENST00000588927		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-3UTR	ENST00000529010	ENST00000588752		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-5UTR	ENST00000529010	ENST00000589238		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-5UTR	ENST00000529010	ENST00000269159		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
5UTR-5UTR	ENST00000529010	ENST00000588927		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-3UTR	ENST00000458064	ENST00000588752		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-5UTR	ENST00000458064	ENST00000589238		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-5UTR	ENST00000458064	ENST00000269159		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-5UTR	ENST00000458064	ENST00000588927		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-3UTR	ENST00000532240	ENST00000588752		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-5UTR	ENST00000532240	ENST00000589238		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-5UTR	ENST00000532240	ENST00000269159		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
intron-5UTR	ENST00000532240	ENST00000588927		ChiTaRS3.1			BP429539	NUCB2	chr11	17304451	+	IMPA2	chr18	12028045	+
In-frame	ENST00000374640	ENST00000338257		ChiTaRS3.1			CD370183	C1QC	chr1	22974184	-	MYO1F	chr19	8617015	+
5CDS-intron	ENST00000374640	ENST00000595046		ChiTaRS3.1			CD370183	C1QC	chr1	22974184	-	MYO1F	chr19	8617015	+
In-frame	ENST00000374639	ENST00000338257		ChiTaRS3.1			CD370183	C1QC	chr1	22974184	-	MYO1F	chr19	8617015	+
5CDS-intron	ENST00000374639	ENST00000595046		ChiTaRS3.1			CD370183	C1QC	chr1	22974184	-	MYO1F	chr19	8617015	+
Frame-shit	ENST00000374637	ENST00000338257		ChiTaRS3.1			CD370183	C1QC	chr1	22974184	-	MYO1F	chr19	8617015	+
5CDS-intron	ENST00000374637	ENST00000595046		ChiTaRS3.1			CD370183	C1QC	chr1	22974184	-	MYO1F	chr19	8617015	+
5UTR-3CDS	ENST00000005257	ENST00000366481		ChiTaRS3.1			AL080170	RALA	chr7	39663426	+	TRIM58	chr1	248023916	+
3UTR-3CDS	ENST00000468201	ENST00000366481		ChiTaRS3.1			AL080170	RALA	chr7	39663426	+	TRIM58	chr1	248023916	+
3UTR-intron	ENST00000261267	ENST00000474872		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
3UTR-3UTR	ENST00000261267	ENST00000382040		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
3UTR-intron	ENST00000261267	ENST00000541728		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-intron	ENST00000549690	ENST00000474872		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-3UTR	ENST00000549690	ENST00000382040		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-intron	ENST00000549690	ENST00000541728		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-intron	ENST00000548839	ENST00000474872		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-3UTR	ENST00000548839	ENST00000382040		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-intron	ENST00000548839	ENST00000541728		ChiTaRS3.1			CA437125	LYZ	chr12	69747570	-	RSAD2	chr2	7037638	-
intron-intron	ENST00000384756	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000384756	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000364799	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000364799	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
5CDS-intron	ENST00000384693	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
5CDS-5UTR	ENST00000384693	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000383926	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000383926	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000516331	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000516331	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000384706	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000384706	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000363981	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000363981	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000384147	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000384147	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-intron	ENST00000365607	ENST00000464611		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
intron-5UTR	ENST00000365607	ENST00000331789		ChiTaRS3.1			DB103450	SNHG1	chr11	62621138	-	ACTB	chr7	5570230	-
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BU186163	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
In-frame	ENST00000392750	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
In-frame	ENST00000392750	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000392750	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000473645	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000473645	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000473645	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000497056	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000497056	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000497056	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-3CDS	ENST00000492396	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-3CDS	ENST00000492396	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-intron	ENST00000492396	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
In-frame	ENST00000461494	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
In-frame	ENST00000461494	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000461494	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000470131	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000470131	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000470131	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
In-frame	ENST00000487947	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
In-frame	ENST00000487947	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000487947	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000471885	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
Frame-shit	ENST00000471885	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
5CDS-intron	ENST00000471885	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-3CDS	ENST00000487678	ENST00000409869		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-3CDS	ENST00000487678	ENST00000295095		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-intron	ENST00000487678	ENST00000473426		ChiTaRS3.1			AV760860	PDCD10	chr3	167437849	-	ARHGAP15	chr2	143986148	+
intron-3UTR	ENST00000415676	ENST00000385193		ChiTaRS3.1			DB262757	CACNA2D3	chr3	54366747	+	MIR632	chr17	30677184	+
intron-3UTR	ENST00000288197	ENST00000385193		ChiTaRS3.1			DB262757	CACNA2D3	chr3	54366747	+	MIR632	chr17	30677184	+
intron-3UTR	ENST00000474759	ENST00000385193		ChiTaRS3.1			DB262757	CACNA2D3	chr3	54366747	+	MIR632	chr17	30677184	+
intron-3UTR	ENST00000490478	ENST00000385193		ChiTaRS3.1			DB262757	CACNA2D3	chr3	54366747	+	MIR632	chr17	30677184	+
intron-3UTR	ENST00000478261	ENST00000385193		ChiTaRS3.1			DB262757	CACNA2D3	chr3	54366747	+	MIR632	chr17	30677184	+
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM768103	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
Frame-shit	ENST00000409975	ENST00000322244		ChiTaRS3.1			BP365839	UNC50	chr2	99226393	+	UBA6	chr4	68543378	-
Frame-shit	ENST00000409975	ENST00000420827		ChiTaRS3.1			BP365839	UNC50	chr2	99226393	+	UBA6	chr4	68543378	-
Frame-shit	ENST00000357765	ENST00000322244		ChiTaRS3.1			BP365839	UNC50	chr2	99226393	+	UBA6	chr4	68543378	-
Frame-shit	ENST00000357765	ENST00000420827		ChiTaRS3.1			BP365839	UNC50	chr2	99226393	+	UBA6	chr4	68543378	-
Frame-shit	ENST00000409347	ENST00000322244		ChiTaRS3.1			BP365839	UNC50	chr2	99226393	+	UBA6	chr4	68543378	-
Frame-shit	ENST00000409347	ENST00000420827		ChiTaRS3.1			BP365839	UNC50	chr2	99226393	+	UBA6	chr4	68543378	-
5CDS-3UTR	ENST00000352940	ENST00000369066		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
5CDS-3UTR	ENST00000352940	ENST00000535438		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
5CDS-intron	ENST00000352940	ENST00000487681		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
5CDS-3UTR	ENST00000358007	ENST00000369066		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
5CDS-3UTR	ENST00000358007	ENST00000535438		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
5CDS-intron	ENST00000358007	ENST00000487681		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
intron-3UTR	ENST00000392155	ENST00000369066		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
intron-3UTR	ENST00000392155	ENST00000535438		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
intron-intron	ENST00000392155	ENST00000487681		ChiTaRS3.1			CA446347	DDX47	chr12	12982454	-	AIM1	chr6	107016470	-
Frame-shit	ENST00000311481	ENST00000310682		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
Frame-shit	ENST00000311481	ENST00000394266		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
Frame-shit	ENST00000311481	ENST00000219315		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
5CDS-3UTR	ENST00000311481	ENST00000418480		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
Frame-shit	ENST00000527397	ENST00000310682		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
Frame-shit	ENST00000527397	ENST00000394266		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
Frame-shit	ENST00000527397	ENST00000219315		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
5CDS-3UTR	ENST00000527397	ENST00000418480		ChiTaRS3.1			BP379219	RAB1B	chr11	66039720	+	SETD6	chr16	58550511	+
5CDS-intron	ENST00000536122	ENST00000368491		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000536122	ENST00000368488		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000536122	ENST00000360290		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000536122	ENST00000392500		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000536122	ENST00000419517		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000536122	ENST00000472713		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000268699	ENST00000368491		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000268699	ENST00000368488		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000268699	ENST00000360290		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000268699	ENST00000392500		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000268699	ENST00000419517		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
5CDS-intron	ENST00000268699	ENST00000472713		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
3UTR-intron	ENST00000540721	ENST00000368491		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
3UTR-intron	ENST00000540721	ENST00000368488		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
3UTR-intron	ENST00000540721	ENST00000360290		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
3UTR-intron	ENST00000540721	ENST00000392500		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
3UTR-intron	ENST00000540721	ENST00000419517		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
3UTR-intron	ENST00000540721	ENST00000472713		ChiTaRS3.1			N86717	GAS8	chr16	90102815	+	CEP85L	chr6	118879994	+
Frame-shit	ENST00000323699	ENST00000339697		ChiTaRS3.1			BG249152	DEGS1	chr1	224377924	+	SERINC1	chr6	122767951	-
Frame-shit	ENST00000391877	ENST00000339697		ChiTaRS3.1			BG249152	DEGS1	chr1	224377924	+	SERINC1	chr6	122767951	-
intron-3CDS	ENST00000465848	ENST00000339697		ChiTaRS3.1			BG249152	DEGS1	chr1	224377924	+	SERINC1	chr6	122767951	-
intron-3UTR	ENST00000384994	ENST00000390237		ChiTaRS3.1			AK026198	NEAT1	chr11	65191274	+	IGKC	chr2	89156872	-
intron-3UTR	ENST00000370454	ENST00000230882		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-3UTR	ENST00000370454	ENST00000357703		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-intron	ENST00000370454	ENST00000537449		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-intron	ENST00000370454	ENST00000513625		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-3UTR	ENST00000479252	ENST00000230882		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-3UTR	ENST00000479252	ENST00000357703		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-intron	ENST00000479252	ENST00000537449		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
intron-intron	ENST00000479252	ENST00000513625		ChiTaRS3.1			AI038022	LRRC8C	chr1	90172954	-	GHR	chr5	42721041	-
3UTR-3UTR	ENST00000320985	ENST00000270162		ChiTaRS3.1			D15050	ZEB1	chr10	31816308	+	SIK1	chr21	44836230	-
3UTR-3UTR	ENST00000361642	ENST00000270162		ChiTaRS3.1			D15050	ZEB1	chr10	31816308	+	SIK1	chr21	44836230	-
intron-3UTR	ENST00000559858	ENST00000270162		ChiTaRS3.1			D15050	ZEB1	chr10	31816308	+	SIK1	chr21	44836230	-
intron-3UTR	ENST00000560721	ENST00000270162		ChiTaRS3.1			D15050	ZEB1	chr10	31816308	+	SIK1	chr21	44836230	-
intron-3UTR	ENST00000542815	ENST00000270162		ChiTaRS3.1			D15050	ZEB1	chr10	31816308	+	SIK1	chr21	44836230	-
3UTR-3UTR	ENST00000446923	ENST00000270162		ChiTaRS3.1			D15050	ZEB1	chr10	31816308	+	SIK1	chr21	44836230	-
intron-3CDS	ENST00000534526	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000534526	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000534526	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000534526	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000534526	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000534526	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000534526	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000534526	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000531134	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000531134	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000531134	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000531134	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000531134	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000531134	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000531134	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000531134	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000427716	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000427716	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000427716	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000427716	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000427716	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000427716	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000427716	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000427716	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000266482	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000266482	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000266482	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000266482	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000266482	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000266482	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000266482	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000266482	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000546442	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000546442	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000546442	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000546442	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000546442	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000546442	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000546442	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000546442	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000525053	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000525053	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000525053	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000525053	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000525053	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000525053	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000525053	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000525053	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000381025	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000381025	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-3CDS	ENST00000381025	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000381025	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000381025	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000381025	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000381025	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-5UTR	ENST00000381025	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000472289	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000472289	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-3CDS	ENST00000472289	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000472289	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000472289	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000472289	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-intron	ENST00000472289	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
5UTR-5UTR	ENST00000472289	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-3CDS	ENST00000473513	ENST00000512701		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-3CDS	ENST00000473513	ENST00000355694		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-3CDS	ENST00000473513	ENST00000380850		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-intron	ENST00000473513	ENST00000297615		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-5UTR	ENST00000473513	ENST00000507285		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-intron	ENST00000473513	ENST00000507993		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-intron	ENST00000473513	ENST00000541445		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
3UTR-5UTR	ENST00000473513	ENST00000582994		ChiTaRS3.1			DB443222	FGD4	chr12	32655272	+	TTC39B	chr9	15226012	-
intron-intron	ENST00000377560	ENST00000371799		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000377560	ENST00000277415		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000377560	ENST00000252854		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000377560	ENST00000371801		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000377560	ENST00000371796		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000377560	ENST00000392991		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000377560	ENST00000371793		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000371799		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000277415		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000252854		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000371801		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000371796		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000392991		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000430131	ENST00000371793		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000371799		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000277415		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000252854		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000371801		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000371796		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000392991		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000550722	ENST00000371793		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000371799		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000277415		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000252854		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000371801		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000371796		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000392991		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
intron-intron	ENST00000549141	ENST00000371793		ChiTaRS3.1			T99046	HECTD4	chr12	112608185	-	OLFM1	chr9	137987742	+
5CDS-intron	ENST00000356554	ENST00000259254		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
5CDS-intron	ENST00000356554	ENST00000356887		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
5CDS-intron	ENST00000356554	ENST00000409836		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
5CDS-intron	ENST00000356554	ENST00000464053		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
intron-intron	ENST00000482811	ENST00000259254		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
intron-intron	ENST00000482811	ENST00000356887		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
intron-intron	ENST00000482811	ENST00000409836		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
intron-intron	ENST00000482811	ENST00000464053		ChiTaRS3.1			AA730065	MAN1A2	chr1	117963272	+	GYPC	chr2	127452947	+
intron-3UTR	ENST00000272134	ENST00000361379		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-3UTR	ENST00000272134	ENST00000336092		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-3UTR	ENST00000272134	ENST00000555948		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-intron	ENST00000272134	ENST00000367312		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-3UTR	ENST00000492457	ENST00000361379		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-3UTR	ENST00000492457	ENST00000336092		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-3UTR	ENST00000492457	ENST00000555948		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-intron	ENST00000492457	ENST00000367312		ChiTaRS3.1			AJ572531	LEFTY1	chr1	226107859	-	TNNI1	chr1	201378299	-
intron-3CDS	ENST00000408742	ENST00000369498		ChiTaRS3.1			AK129832	MIR548N	chr2	179449808	-	FUNDC2	chrX	154279966	+
intron-3UTR	ENST00000408742	ENST00000484175		ChiTaRS3.1			AK129832	MIR548N	chr2	179449808	-	FUNDC2	chrX	154279966	+
intron-3CDS	ENST00000251643	ENST00000311604		ChiTaRS3.1			CV571702	KRT12	chr17	39023305	-	LSP1	chr11	1902753	+
intron-3CDS	ENST00000251643	ENST00000381775		ChiTaRS3.1			CV571702	KRT12	chr17	39023305	-	LSP1	chr11	1902753	+
intron-3CDS	ENST00000251643	ENST00000405957		ChiTaRS3.1			CV571702	KRT12	chr17	39023305	-	LSP1	chr11	1902753	+
intron-3CDS	ENST00000251643	ENST00000406638		ChiTaRS3.1			CV571702	KRT12	chr17	39023305	-	LSP1	chr11	1902753	+
intron-3UTR	ENST00000251643	ENST00000485341		ChiTaRS3.1			CV571702	KRT12	chr17	39023305	-	LSP1	chr11	1902753	+
intron-intron	ENST00000251643	ENST00000599825		ChiTaRS3.1			CV571702	KRT12	chr17	39023305	-	LSP1	chr11	1902753	+
In-frame	ENST00000200453	ENST00000295598		ChiTaRS3.1			CN305317	PPP1R15A	chr19	49377085	+	ATP1A1	chr1	116933006	+
In-frame	ENST00000200453	ENST00000537345		ChiTaRS3.1			CN305317	PPP1R15A	chr19	49377085	+	ATP1A1	chr1	116933006	+
In-frame	ENST00000200453	ENST00000369496		ChiTaRS3.1			CN305317	PPP1R15A	chr19	49377085	+	ATP1A1	chr1	116933006	+
5CDS-intron	ENST00000200453	ENST00000491156		ChiTaRS3.1			CN305317	PPP1R15A	chr19	49377085	+	ATP1A1	chr1	116933006	+
Frame-shit	ENST00000540691	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000539106	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000222307	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
intron-3CDS	ENST00000600796	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000601630	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000599000	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000595073	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000599319	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000602094	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
Frame-shit	ENST00000598830	ENST00000355349		ChiTaRS3.1			N80879	KXD1	chr19	18675784	+	MYH7	chr14	23884391	-
intron-3CDS	ENST00000532636	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000532636	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000533540	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000533540	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000453788	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000453788	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534624	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534624	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000227378	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000227378	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534319	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534319	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526110	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526110	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526862	ENST00000532636		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526862	ENST00000533540		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000453788		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000534624		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000227378		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000534319		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000526110		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000526862		ChiTaRS3.1			BE812526	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU216064	BCR	chr22	23603179	+	ABL1	chr9	133729540	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU216064	BCR	chr22	23603179	+	ABL1	chr9	133729540	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU216064	BCR	chr22	23603179	+	ABL1	chr9	133729540	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU216064	BCR	chr22	23603179	+	ABL1	chr9	133729540	+
3UTR-3UTR	ENST00000368921	ENST00000302351		ChiTaRS3.1			DA770041	MLLT11	chr1	151040068	+	ENC1	chr5	73925446	-
3UTR-3UTR	ENST00000368921	ENST00000510316		ChiTaRS3.1			DA770041	MLLT11	chr1	151040068	+	ENC1	chr5	73925446	-
3UTR-5UTR	ENST00000368921	ENST00000509284		ChiTaRS3.1			DA770041	MLLT11	chr1	151040068	+	ENC1	chr5	73925446	-
3UTR-intron	ENST00000368921	ENST00000537006		ChiTaRS3.1			DA770041	MLLT11	chr1	151040068	+	ENC1	chr5	73925446	-
intron-3CDS	ENST00000223023	ENST00000019317		ChiTaRS3.1			CD522431	WASL	chr7	123323709	-	RALBP1	chr18	9516972	+
intron-3CDS	ENST00000223023	ENST00000383432		ChiTaRS3.1			CD522431	WASL	chr7	123323709	-	RALBP1	chr18	9516972	+
5UTR-3CDS	ENST00000307569	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000307569	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000307569	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000307569	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-intron	ENST00000307569	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000324432	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000324432	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000324432	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000324432	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-intron	ENST00000324432	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000446600	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000446600	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000446600	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000446600	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-intron	ENST00000446600	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000413936	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000413936	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000413936	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000413936	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-intron	ENST00000413936	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000430490	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000430490	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000430490	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-3CDS	ENST00000430490	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
5UTR-intron	ENST00000430490	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000472426	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000472426	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000472426	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000472426	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-intron	ENST00000472426	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000446820	ENST00000413040		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000446820	ENST00000568733		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000446820	ENST00000566856		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000446820	ENST00000355851		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-intron	ENST00000446820	ENST00000477666		ChiTaRS3.1			BI909126	DTX2	chr7	76091153	+	NUB1	chr7	151072933	+
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006728	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
3UTR-3CDS	ENST00000534336	ENST00000402363		ChiTaRS3.1			AF113699	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-3CDS	ENST00000534336	ENST00000537798		ChiTaRS3.1			AF113699	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-3CDS	ENST00000534336	ENST00000350030		ChiTaRS3.1			AF113699	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-intron	ENST00000534336	ENST00000372052		ChiTaRS3.1			AF113699	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-intron	ENST00000534336	ENST00000351223		ChiTaRS3.1			AF113699	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
3UTR-intron	ENST00000534336	ENST00000530073		ChiTaRS3.1			AF113699	MALAT1	chr11	65269394	+	NASP	chr1	46073875	+
intron-intron	ENST00000375446	ENST00000577297		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000375446	ENST00000498979		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000375446	ENST00000500970		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000375446	ENST00000578923		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000375446	ENST00000530002		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000489274	ENST00000577297		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000489274	ENST00000498979		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000489274	ENST00000500970		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000489274	ENST00000578923		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000489274	ENST00000530002		ChiTaRS3.1			AI042553	NINJ1	chr9	95884101	+	USP2-AS1	chr11	119290781	+
intron-intron	ENST00000450793	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000538141	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000380180	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000318007	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
5CDS-intron	ENST00000437932	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
5CDS-intron	ENST00000317968	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
5CDS-intron	ENST00000542407	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000508216	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
5CDS-intron	ENST00000514743	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
3UTR-intron	ENST00000380176	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000359265	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000512274	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
intron-intron	ENST00000504489	ENST00000408667		ChiTaRS3.1			AF076463	PDLIM5	chr4	95539258	+	MIR548F1	chr1	186430230	-
Frame-shit	ENST00000346169	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000346169	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000414031	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000392537	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000382330	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000350481	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000352767	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000427845	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000342981	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000319274	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000424196	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000411531	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000441154	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000434061	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000378300		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000378292		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000329305		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
Frame-shit	ENST00000435046	ENST00000360958		ChiTaRS3.1			AW859462	EIF4G1	chr3	184040401	+	TPM2	chr9	35685776	-
intron-3CDS	ENST00000439211	ENST00000310118		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000439211	ENST00000435761		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000439211	ENST00000439383		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3UTR	ENST00000439211	ENST00000459910		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3CDS	ENST00000505337	ENST00000310118		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000505337	ENST00000435761		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000505337	ENST00000439383		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3UTR	ENST00000505337	ENST00000459910		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3CDS	ENST00000511032	ENST00000310118		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000511032	ENST00000435761		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000511032	ENST00000439383		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3UTR	ENST00000511032	ENST00000459910		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3CDS	ENST00000504396	ENST00000310118		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000504396	ENST00000435761		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000504396	ENST00000439383		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3UTR	ENST00000504396	ENST00000459910		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3CDS	ENST00000513048	ENST00000310118		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000513048	ENST00000435761		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-5UTR	ENST00000513048	ENST00000439383		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
intron-3UTR	ENST00000513048	ENST00000459910		ChiTaRS3.1			DA541950	DHFR	chr5	79947318	-	PSMD2	chr3	184019408	+
Frame-shit	ENST00000540797	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-intron	ENST00000540797	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-3UTR	ENST00000540797	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
In-frame	ENST00000380324	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-intron	ENST00000380324	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-3UTR	ENST00000380324	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
Frame-shit	ENST00000268049	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-intron	ENST00000268049	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-3UTR	ENST00000268049	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
intron-3CDS	ENST00000536001	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
intron-intron	ENST00000536001	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
intron-3UTR	ENST00000536001	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
Frame-shit	ENST00000539772	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-intron	ENST00000539772	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-3UTR	ENST00000539772	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
Frame-shit	ENST00000558285	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-intron	ENST00000558285	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-3UTR	ENST00000558285	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
Frame-shit	ENST00000559711	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-intron	ENST00000559711	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
5CDS-3UTR	ENST00000559711	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
3UTR-3CDS	ENST00000558218	ENST00000270142		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
3UTR-intron	ENST00000558218	ENST00000389995		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
3UTR-3UTR	ENST00000558218	ENST00000470944		ChiTaRS3.1			AA171920	USP3	chr15	63882968	-	SOD1	chr21	33032096	+
intron-intron	ENST00000586725	ENST00000379540		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-intron	ENST00000586725	ENST00000379521		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-3UTR	ENST00000586725	ENST00000318524		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-intron	ENST00000586725	ENST00000463421		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-intron	ENST00000269195	ENST00000379540		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-intron	ENST00000269195	ENST00000379521		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-3UTR	ENST00000269195	ENST00000318524		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-intron	ENST00000269195	ENST00000463421		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-intron	ENST00000591081	ENST00000379540		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-intron	ENST00000591081	ENST00000379521		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-3UTR	ENST00000591081	ENST00000318524		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
intron-intron	ENST00000591081	ENST00000463421		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-intron	ENST00000537549	ENST00000379540		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-intron	ENST00000537549	ENST00000379521		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-3UTR	ENST00000537549	ENST00000318524		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
5CDS-intron	ENST00000537549	ENST00000463421		ChiTaRS3.1			BG289433	GALNT1	chr18	33271068	+	NFX1	chr9	33348276	+
3UTR-3UTR	ENST00000397801	ENST00000339570		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000397801	ENST00000415380		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000397801	ENST00000261693		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000397801	ENST00000376788		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000397801	ENST00000546215		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000397801	ENST00000535005		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000397801	ENST00000541205		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000397801	ENST00000540495		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000397801	ENST00000544327		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000538940	ENST00000339570		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000538940	ENST00000415380		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000538940	ENST00000261693		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000538940	ENST00000376788		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000538940	ENST00000546215		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000538940	ENST00000535005		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000538940	ENST00000541205		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000538940	ENST00000540495		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000538940	ENST00000544327		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000525482	ENST00000339570		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000525482	ENST00000415380		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000525482	ENST00000261693		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000525482	ENST00000376788		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000525482	ENST00000546215		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000525482	ENST00000535005		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000525482	ENST00000541205		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000525482	ENST00000540495		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000525482	ENST00000544327		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000543966	ENST00000339570		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000543966	ENST00000415380		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000543966	ENST00000261693		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-3UTR	ENST00000543966	ENST00000376788		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000543966	ENST00000546215		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000543966	ENST00000535005		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000543966	ENST00000541205		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000543966	ENST00000540495		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
3UTR-intron	ENST00000543966	ENST00000544327		ChiTaRS3.1			AI123607	ROBO3	chr11	124751231	-	SCARB1	chr12	125262885	+
intron-intron	ENST00000251527	ENST00000234590		ChiTaRS3.1			BQ940416	ESYT2	chr7	158524160	-	ENO1	chr1	8938785	-
intron-intron	ENST00000497111	ENST00000234590		ChiTaRS3.1			BQ940416	ESYT2	chr7	158524160	-	ENO1	chr1	8938785	-
intron-intron	ENST00000435514	ENST00000234590		ChiTaRS3.1			BQ940416	ESYT2	chr7	158524160	-	ENO1	chr1	8938785	-
5UTR-3CDS	ENST00000316286	ENST00000287878		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000418337		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000433631		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000492843		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000392801		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-5UTR	ENST00000316286	ENST00000461529		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
Frame-shit	ENST00000491431	ENST00000287878		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000418337		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000433631		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000492843		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000392801		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-5UTR	ENST00000491431	ENST00000461529		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-3CDS	ENST00000451334	ENST00000287878		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000418337		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000433631		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000492843		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000392801		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-5UTR	ENST00000451334	ENST00000461529		ChiTaRS3.1			DB487487	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
intron-3CDS	ENST00000439590	ENST00000230085		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
intron-3CDS	ENST00000439590	ENST00000426155		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
intron-3CDS	ENST00000439590	ENST00000349379		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
intron-intron	ENST00000439590	ENST00000368982		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000311111	ENST00000230085		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000311111	ENST00000426155		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000311111	ENST00000349379		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-intron	ENST00000311111	ENST00000368982		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000584577	ENST00000230085		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000584577	ENST00000426155		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000584577	ENST00000349379		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-intron	ENST00000584577	ENST00000368982		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000534490	ENST00000230085		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000534490	ENST00000426155		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000534490	ENST00000349379		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-intron	ENST00000534490	ENST00000368982		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000533498	ENST00000230085		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000533498	ENST00000426155		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-3CDS	ENST00000533498	ENST00000349379		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
5UTR-intron	ENST00000533498	ENST00000368982		ChiTaRS3.1			BF696633	RPL38	chr17	72199886	+	SNX3	chr6	108533458	-
intron-3UTR	ENST00000238256	ENST00000356093		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000398863		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000343067		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000349460		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000373800		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000347529		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000373798		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000238256	ENST00000373797		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000238256	ENST00000460378		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000356093		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000398863		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000343067		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000349460		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000373800		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000347529		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000373798		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000493847	ENST00000373797		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-3UTR	ENST00000493847	ENST00000460378		ChiTaRS3.1			BE737436	FKBP15	chr9	116025191	+	EPB41	chr1	29444873	+
intron-intron	ENST00000431982	ENST00000431982		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000431982	ENST00000413573		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000431982	ENST00000252037		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000413573	ENST00000431982		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000413573	ENST00000413573		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000413573	ENST00000252037		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000252037	ENST00000431982		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000252037	ENST00000413573		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
intron-intron	ENST00000252037	ENST00000252037		ChiTaRS3.1			BM683040	FKBP6	chr7	72486812	-	FKBP6	chr1	27268087	-
3UTR-intron	ENST00000392883	ENST00000376704		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000449742		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000446013		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000449208		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000553167		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000451727		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000417411		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000548891		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000426996		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000413055		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000551474		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000416714		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000456988		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000546716		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000354038		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000259941		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000548533		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000447465		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000431258		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000551591		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-3UTR	ENST00000392883	ENST00000428611		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-3UTR	ENST00000392883	ENST00000448645		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000392883	ENST00000553004		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000376704		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000449742		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000446013		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000449208		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000553167		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000451727		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000417411		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000548891		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000426996		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000413055		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000551474		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000416714		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000456988		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000546716		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000354038		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000259941		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000548533		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000447465		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000431258		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000551591		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-3UTR	ENST00000532917	ENST00000428611		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-3UTR	ENST00000532917	ENST00000448645		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532917	ENST00000553004		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000376704		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000449742		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000446013		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000449208		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000553167		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000451727		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000417411		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000548891		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000426996		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000413055		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000551474		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000416714		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000456988		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000546716		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000354038		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000259941		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000548533		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000447465		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000431258		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000551591		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-3UTR	ENST00000532903	ENST00000428611		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-3UTR	ENST00000532903	ENST00000448645		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
3UTR-intron	ENST00000532903	ENST00000553004		ChiTaRS3.1			R93335	CD3G	chr11	118223867	-	TRIM10	chr6	1450352	+
intron-intron	ENST00000321169	ENST00000381638		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000321169	ENST00000574474		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000435217	ENST00000381638		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000435217	ENST00000574474		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000451445	ENST00000381638		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000451445	ENST00000574474		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000456194	ENST00000381638		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000456194	ENST00000574474		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000457447	ENST00000381638		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
intron-intron	ENST00000457447	ENST00000574474		ChiTaRS3.1			BE501084	HACL1	chr3	15604937	+	ZZEF1	chr17	3926423	+
In-frame	ENST00000422447	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000422447	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000422447	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000430553	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000430553	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000396222	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000396222	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-3CDS	ENST00000227157	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-intron	ENST00000227157	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000540430	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000540430	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000379412	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000379412	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000288828		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000401525		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
In-frame	ENST00000542179	ENST00000404704		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000485854		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000382384		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
5CDS-intron	ENST00000542179	ENST00000484262		ChiTaRS3.1			BG775162	LDHA	chr11	18427106	+	WIPI2	chr7	5262235	+
intron-5UTR	ENST00000359087	ENST00000541477		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000359087	ENST00000229277		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000359087	ENST00000538763		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000359087	ENST00000544774		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000359087	ENST00000545045		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000359087	ENST00000535366		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000359087	ENST00000534977		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000290810	ENST00000541477		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000290810	ENST00000229277		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000290810	ENST00000538763		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000290810	ENST00000544774		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000290810	ENST00000545045		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000290810	ENST00000535366		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000290810	ENST00000534977		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000379463	ENST00000541477		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000379463	ENST00000229277		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000379463	ENST00000538763		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000379463	ENST00000544774		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000379463	ENST00000545045		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000379463	ENST00000535366		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000379463	ENST00000534977		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000394074	ENST00000541477		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000394074	ENST00000229277		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000394074	ENST00000538763		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000394074	ENST00000544774		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000394074	ENST00000545045		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000394074	ENST00000535366		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000394074	ENST00000534977		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000564040	ENST00000541477		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-5UTR	ENST00000564040	ENST00000229277		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000564040	ENST00000538763		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000564040	ENST00000544774		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000564040	ENST00000545045		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000564040	ENST00000535366		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
intron-intron	ENST00000564040	ENST00000534977		ChiTaRS3.1			AU142951	NAE1	chr16	66842911	-	ENO2	chr12	7023722	+
Frame-shit	ENST00000371065	ENST00000361565		ChiTaRS3.1			DA753120	LEPROT	chr1	65886423	+	IPO9	chr1	201838716	+
5CDS-intron	ENST00000371065	ENST00000464348		ChiTaRS3.1			DA753120	LEPROT	chr1	65886423	+	IPO9	chr1	201838716	+
3UTR-3CDS	ENST00000484243	ENST00000361565		ChiTaRS3.1			DA753120	LEPROT	chr1	65886423	+	IPO9	chr1	201838716	+
3UTR-intron	ENST00000484243	ENST00000464348		ChiTaRS3.1			DA753120	LEPROT	chr1	65886423	+	IPO9	chr1	201838716	+
intron-intron	ENST00000444189	ENST00000327827		ChiTaRS3.1			AA374390	CHAC1	chr15	41248361	+	C16orf72	chr16	9204863	+
3UTR-intron	ENST00000446533	ENST00000327827		ChiTaRS3.1			AA374390	CHAC1	chr15	41248361	+	C16orf72	chr16	9204863	+
5CDS-intron	ENST00000487220	ENST00000327827		ChiTaRS3.1			AA374390	CHAC1	chr15	41248361	+	C16orf72	chr16	9204863	+
intron-5UTR	ENST00000504032	ENST00000216951		ChiTaRS3.1			DA389075	UGDH-AS1	chr4	39587469	-	GSS	chr20	33543599	-
intron-intron	ENST00000504032	ENST00000541098		ChiTaRS3.1			DA389075	UGDH-AS1	chr4	39587469	-	GSS	chr20	33543599	-
intron-intron	ENST00000504032	ENST00000451957		ChiTaRS3.1			DA389075	UGDH-AS1	chr4	39587469	-	GSS	chr20	33543599	-
5CDS-intron	ENST00000332707	ENST00000601302		ChiTaRS3.1			CN409157	XPOT	chr12	64811874	+	ARL14EPL	chr5	115387639	-
intron-intron	ENST00000599740	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599740	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599740	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599740	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000418854	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000418854	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000418854	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000418854	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599268	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599268	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599268	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599268	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597385	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597385	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597385	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597385	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000601679	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000601679	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000601679	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000601679	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597170	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597170	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597170	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000597170	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000596532	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000596532	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000596532	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000596532	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599956	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599956	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599956	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000599956	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593878	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593878	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593878	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593878	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000444629	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000444629	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000444629	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000444629	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000598247	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000598247	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000598247	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000598247	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593848	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593848	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593848	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000593848	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000435515	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000435515	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000435515	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000435515	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000439606	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000439606	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000439606	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000439606	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000427354	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000427354	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000427354	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000427354	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000413479	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000413479	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000413479	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000413479	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000417875	ENST00000533050		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000417875	ENST00000525728		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000417875	ENST00000529731		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
intron-intron	ENST00000417875	ENST00000360194		ChiTaRS3.1			BP387896	SLC8A1-AS1	chr2	40267644	-	FAM118B	chr11	126133167	-
5CDS-intron	ENST00000382518	ENST00000369219		ChiTaRS3.1			AW864459	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
5CDS-intron	ENST00000009180	ENST00000369219		ChiTaRS3.1			AW864459	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
5CDS-intron	ENST00000382515	ENST00000369219		ChiTaRS3.1			AW864459	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
3UTR-intron	ENST00000481267	ENST00000369219		ChiTaRS3.1			AW864459	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
intron-3UTR	ENST00000260385	ENST00000355653		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-intron	ENST00000260385	ENST00000587173		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-intron	ENST00000260385	ENST00000420567		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-3UTR	ENST00000338376	ENST00000355653		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-intron	ENST00000338376	ENST00000587173		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-intron	ENST00000338376	ENST00000420567		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-3UTR	ENST00000558560	ENST00000355653		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-intron	ENST00000558560	ENST00000587173		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-intron	ENST00000558560	ENST00000420567		ChiTaRS3.1			BQ674218	RMDN3	chr15	41030709	-	VAT1	chr17	41167830	-
intron-3CDS	ENST00000535225	ENST00000370577		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000535225	ENST00000370570		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000358657	ENST00000370577		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000358657	ENST00000370570		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000453097	ENST00000370577		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000453097	ENST00000370570		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000394856	ENST00000370577		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000394856	ENST00000370570		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000514353	ENST00000370577		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000514353	ENST00000370570		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000546663	ENST00000370577		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000546663	ENST00000370570		ChiTaRS3.1			BC047623	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000526421	ENST00000348428		ChiTaRS3.1			AF123094	BIRC3	chr11	102201973	+	MALT1	chr18	56363598	+
intron-3CDS	ENST00000526421	ENST00000345724		ChiTaRS3.1			AF123094	BIRC3	chr11	102201973	+	MALT1	chr18	56363598	+
In-frame	ENST00000263464	ENST00000348428		ChiTaRS3.1			AF123094	BIRC3	chr11	102201973	+	MALT1	chr18	56363598	+
In-frame	ENST00000263464	ENST00000345724		ChiTaRS3.1			AF123094	BIRC3	chr11	102201973	+	MALT1	chr18	56363598	+
In-frame	ENST00000532808	ENST00000348428		ChiTaRS3.1			AF123094	BIRC3	chr11	102201973	+	MALT1	chr18	56363598	+
In-frame	ENST00000532808	ENST00000345724		ChiTaRS3.1			AF123094	BIRC3	chr11	102201973	+	MALT1	chr18	56363598	+
5CDS-3UTR	ENST00000518659	ENST00000358704		ChiTaRS3.1			AK056053	TENM2	chr5	167545332	+	ZBTB18	chr1	244220651	+
5CDS-3UTR	ENST00000545108	ENST00000358704		ChiTaRS3.1			AK056053	TENM2	chr5	167545332	+	ZBTB18	chr1	244220651	+
intron-3UTR	ENST00000520393	ENST00000358704		ChiTaRS3.1			AK056053	TENM2	chr5	167545332	+	ZBTB18	chr1	244220651	+
5CDS-3UTR	ENST00000519204	ENST00000358704		ChiTaRS3.1			AK056053	TENM2	chr5	167545332	+	ZBTB18	chr1	244220651	+
5CDS-3UTR	ENST00000520394	ENST00000358704		ChiTaRS3.1			AK056053	TENM2	chr5	167545332	+	ZBTB18	chr1	244220651	+
5CDS-3UTR	ENST00000403607	ENST00000358704		ChiTaRS3.1			AK056053	TENM2	chr5	167545332	+	ZBTB18	chr1	244220651	+
intron-3CDS	ENST00000286548	ENST00000340296		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000534253		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000263811		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000397119		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000410079		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000508530		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000409197		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000409317		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000409773		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000409453		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000286548	ENST00000358002		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000340296		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000534253		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000263811		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000397119		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000410079		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000508530		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000409197		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000409317		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000409773		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000409453		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-3CDS	ENST00000397476	ENST00000358002		ChiTaRS3.1			DA490542	GNAQ	chr9	80333440	-	DYNC1I2	chr2	172571855	+
intron-intron	ENST00000454682	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000454682	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000454682	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000454682	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000454682	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000454682	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000550952	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000550952	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000550952	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000550952	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000550952	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000550952	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000356769	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000356769	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000356769	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000356769	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000356769	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000356769	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000552540	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000552540	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000552540	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000552540	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000552540	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000552540	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000393891	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000393891	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000393891	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000393891	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000393891	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000393891	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000548563	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000548563	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000548563	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000548563	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000548563	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000548563	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000546392	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000546392	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000546392	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000546392	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000546392	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000546392	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000551793	ENST00000412585		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-3UTR	ENST00000551793	ENST00000425848		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000551793	ENST00000450871		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000551793	ENST00000359635		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000551793	ENST00000435618		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
intron-intron	ENST00000551793	ENST00000421349		ChiTaRS3.1			AA582849	NACA	chr12	57106694	+	HLA-B	chr6	2834404	+
5CDS-5UTR	ENST00000560079	ENST00000373548		ChiTaRS3.1			BQ687521	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000373541		ChiTaRS3.1			BQ687521	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000490081		ChiTaRS3.1			BQ687521	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-5UTR	ENST00000299927	ENST00000373548		ChiTaRS3.1			BQ687521	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000373541		ChiTaRS3.1			BQ687521	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000490081		ChiTaRS3.1			BQ687521	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
intron-3CDS	ENST00000295688	ENST00000348035		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000295688	ENST00000356142		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3UTR	ENST00000295688	ENST00000488373		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000368259	ENST00000348035		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000368259	ENST00000356142		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3UTR	ENST00000368259	ENST00000488373		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000368261	ENST00000348035		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000368261	ENST00000356142		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3UTR	ENST00000368261	ENST00000488373		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000472765	ENST00000348035		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000472765	ENST00000356142		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3UTR	ENST00000472765	ENST00000488373		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000368256	ENST00000348035		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3CDS	ENST00000368256	ENST00000356142		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-3UTR	ENST00000368256	ENST00000488373		ChiTaRS3.1			CB114948	CCT3	chr1	156287279	-	RAC1	chr7	6442050	+
intron-intron	ENST00000358763	ENST00000604270		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000358763	ENST00000603053		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000358763	ENST00000493463		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000332840	ENST00000604270		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000332840	ENST00000603053		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000332840	ENST00000493463		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000467095	ENST00000604270		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000467095	ENST00000603053		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-intron	ENST00000467095	ENST00000493463		ChiTaRS3.1			BQ366047	SYN3	chr22	33256851	+	ERVW-1	chr7	92099140	-
intron-3CDS	ENST00000391826	ENST00000291568		ChiTaRS3.1			BU534964	IL4I1	chr19	50432463	-	CSTB	chr21	45194620	-
intron-3CDS	ENST00000595948	ENST00000291568		ChiTaRS3.1			BU534964	IL4I1	chr19	50432463	-	CSTB	chr21	45194620	-
intron-3CDS	ENST00000341114	ENST00000291568		ChiTaRS3.1			BU534964	IL4I1	chr19	50432463	-	CSTB	chr21	45194620	-
3UTR-5UTR	ENST00000451311	ENST00000378482		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000451311	ENST00000422612		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000451311	ENST00000545599		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000451311	ENST00000286824		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-intron	ENST00000451311	ENST00000488893		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380636	ENST00000378482		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380636	ENST00000422612		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380636	ENST00000545599		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380636	ENST00000286824		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-intron	ENST00000380636	ENST00000488893		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380635	ENST00000378482		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380635	ENST00000422612		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380635	ENST00000545599		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380635	ENST00000286824		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-intron	ENST00000380635	ENST00000488893		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380633	ENST00000378482		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380633	ENST00000422612		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380633	ENST00000545599		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-5UTR	ENST00000380633	ENST00000286824		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
3UTR-intron	ENST00000380633	ENST00000488893		ChiTaRS3.1			DA286674	TMSB4X	chrX	12995042	+	TSPAN7	chrX	38420797	+
intron-3CDS	ENST00000216281	ENST00000268482		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000216281	ENST00000536867		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000334701	ENST00000268482		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000334701	ENST00000536867		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000441629	ENST00000268482		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000441629	ENST00000536867		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000558600	ENST00000268482		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-3CDS	ENST00000558600	ENST00000536867		ChiTaRS3.1			BP241442	HSP90AA1	chr14	102551313	-	DHX38	chr16	72139506	+
intron-intron	ENST00000364849	ENST00000561500		ChiTaRS3.1			DA648735	SNHG6	chr8	67834709	-	NQO1	chr16	69760463	-
intron-5UTR	ENST00000364849	ENST00000379047		ChiTaRS3.1			DA648735	SNHG6	chr8	67834709	-	NQO1	chr16	69760463	-
intron-5UTR	ENST00000364849	ENST00000320623		ChiTaRS3.1			DA648735	SNHG6	chr8	67834709	-	NQO1	chr16	69760463	-
intron-5UTR	ENST00000364849	ENST00000379046		ChiTaRS3.1			DA648735	SNHG6	chr8	67834709	-	NQO1	chr16	69760463	-
intron-5UTR	ENST00000364849	ENST00000439109		ChiTaRS3.1			DA648735	SNHG6	chr8	67834709	-	NQO1	chr16	69760463	-
intron-5UTR	ENST00000364849	ENST00000564043		ChiTaRS3.1			DA648735	SNHG6	chr8	67834709	-	NQO1	chr16	69760463	-
3UTR-3UTR	ENST00000336452	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000336452	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000336452	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-intron	ENST00000336452	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000336458	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000336458	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000336458	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-intron	ENST00000336458	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000576930	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000576930	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000576930	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-intron	ENST00000576930	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3UTR	ENST00000572815	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3UTR	ENST00000572815	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3UTR	ENST00000572815	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-intron	ENST00000572815	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3UTR	ENST00000573542	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3UTR	ENST00000573542	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3UTR	ENST00000573542	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-intron	ENST00000573542	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000419711	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000419711	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000419711	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-intron	ENST00000419711	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000571955	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000571955	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000571955	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-intron	ENST00000571955	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000416016	ENST00000292205		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000416016	ENST00000368474		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-3UTR	ENST00000416016	ENST00000368471		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
3UTR-intron	ENST00000416016	ENST00000471068		ChiTaRS3.1			BM720324	EIF5A	chr17	7215633	+	ADAR	chr1	154555244	-
intron-3CDS	ENST00000462405	ENST00000222390		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000462405	ENST00000457544		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000462405	ENST00000444829		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000462405	ENST00000453411		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000462405	ENST00000423064		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000462405	ENST00000354224		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-intron	ENST00000462405	ENST00000453018		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370425	ENST00000222390		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370425	ENST00000457544		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370425	ENST00000444829		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370425	ENST00000453411		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370425	ENST00000423064		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370425	ENST00000354224		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-intron	ENST00000370425	ENST00000453018		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000294696	ENST00000222390		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000294696	ENST00000457544		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000294696	ENST00000444829		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000294696	ENST00000453411		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000294696	ENST00000423064		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000294696	ENST00000354224		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-intron	ENST00000294696	ENST00000453018		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370424	ENST00000222390		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370424	ENST00000457544		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370424	ENST00000444829		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370424	ENST00000453411		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370424	ENST00000423064		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-3CDS	ENST00000370424	ENST00000354224		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
intron-intron	ENST00000370424	ENST00000453018		ChiTaRS3.1			AV707491	HFM1	chr1	91852823	-	HGF	chr7	81399278	-
Frame-shit	ENST00000555414	ENST00000369983		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
5CDS-intron	ENST00000555414	ENST00000476019		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
Frame-shit	ENST00000216714	ENST00000369983		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
5CDS-intron	ENST00000216714	ENST00000476019		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
Frame-shit	ENST00000398030	ENST00000369983		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
5CDS-intron	ENST00000398030	ENST00000476019		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
intron-3CDS	ENST00000557054	ENST00000369983		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
intron-intron	ENST00000557054	ENST00000476019		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
3UTR-3CDS	ENST00000557365	ENST00000369983		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
3UTR-intron	ENST00000557365	ENST00000476019		ChiTaRS3.1			BF806154	APEX1	chr14	20924123	+	GBF1	chr10	104136765	+
intron-intron	ENST00000298198	ENST00000324446		ChiTaRS3.1			BF038662	PGM2L1	chr11	74046458	-	TTTY14	chrY	21153256	-
In-frame	ENST00000380737	ENST00000360540		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000380737	ENST00000544451		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000380737	ENST00000519559		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000380737	ENST00000522514		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000380737	ENST00000521344		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
In-frame	ENST00000315985	ENST00000360540		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000315985	ENST00000544451		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000315985	ENST00000519559		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000315985	ENST00000522514		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000315985	ENST00000521344		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-3CDS	ENST00000523473	ENST00000360540		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-intron	ENST00000523473	ENST00000544451		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-5UTR	ENST00000523473	ENST00000519559		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-5UTR	ENST00000523473	ENST00000522514		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-intron	ENST00000523473	ENST00000521344		ChiTaRS3.1			CF994096	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
intron-3CDS	ENST00000399537	ENST00000275036		ChiTaRS3.1			BE925578	TNRC18	chr7	5410033	-	HMGN3	chr6	79918295	-
intron-3CDS	ENST00000399537	ENST00000344726		ChiTaRS3.1			BE925578	TNRC18	chr7	5410033	-	HMGN3	chr6	79918295	-
intron-3CDS	ENST00000430969	ENST00000275036		ChiTaRS3.1			BE925578	TNRC18	chr7	5410033	-	HMGN3	chr6	79918295	-
intron-3CDS	ENST00000430969	ENST00000344726		ChiTaRS3.1			BE925578	TNRC18	chr7	5410033	-	HMGN3	chr6	79918295	-
intron-3CDS	ENST00000399434	ENST00000275036		ChiTaRS3.1			BE925578	TNRC18	chr7	5410033	-	HMGN3	chr6	79918295	-
intron-3CDS	ENST00000399434	ENST00000344726		ChiTaRS3.1			BE925578	TNRC18	chr7	5410033	-	HMGN3	chr6	79918295	-
intron-3CDS	ENST00000321613	ENST00000372970		ChiTaRS3.1			BC013692	PHYHIP	chr8	22078980	-	OSER1	chr20	42826334	-
intron-3CDS	ENST00000321613	ENST00000255174		ChiTaRS3.1			BC013692	PHYHIP	chr8	22078980	-	OSER1	chr20	42826334	-
intron-3CDS	ENST00000454243	ENST00000372970		ChiTaRS3.1			BC013692	PHYHIP	chr8	22078980	-	OSER1	chr20	42826334	-
intron-3CDS	ENST00000454243	ENST00000255174		ChiTaRS3.1			BC013692	PHYHIP	chr8	22078980	-	OSER1	chr20	42826334	-
Frame-shit	ENST00000324932	ENST00000320316		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000324932	ENST00000571362		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000324932	ENST00000576955		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000324932	ENST00000454255		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-intron	ENST00000324932	ENST00000570753		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000359171	ENST00000320316		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000359171	ENST00000571362		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000359171	ENST00000576955		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000359171	ENST00000454255		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-intron	ENST00000359171	ENST00000570753		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000355260	ENST00000320316		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000355260	ENST00000571362		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000355260	ENST00000576955		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000355260	ENST00000454255		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-intron	ENST00000355260	ENST00000570753		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000397004	ENST00000320316		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000397004	ENST00000571362		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000397004	ENST00000576955		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000397004	ENST00000454255		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-intron	ENST00000397004	ENST00000570753		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000397007	ENST00000320316		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
Frame-shit	ENST00000397007	ENST00000571362		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000397007	ENST00000576955		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-5UTR	ENST00000397007	ENST00000454255		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
5CDS-intron	ENST00000397007	ENST00000570753		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
intron-3CDS	ENST00000488828	ENST00000320316		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
intron-3CDS	ENST00000488828	ENST00000571362		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
intron-5UTR	ENST00000488828	ENST00000576955		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
intron-5UTR	ENST00000488828	ENST00000454255		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
intron-intron	ENST00000488828	ENST00000570753		ChiTaRS3.1			EF071958	NUP98	chr11	3756420	-	PHF23	chr17	7139887	-
3UTR-3CDS	ENST00000336314	ENST00000340170		ChiTaRS3.1			BF841958	LARP1	chr5	154196201	+	HIRA	chr22	19338921	-
3UTR-3CDS	ENST00000336314	ENST00000263208		ChiTaRS3.1			BF841958	LARP1	chr5	154196201	+	HIRA	chr22	19338921	-
3UTR-3CDS	ENST00000336314	ENST00000541063		ChiTaRS3.1			BF841958	LARP1	chr5	154196201	+	HIRA	chr22	19338921	-
3UTR-3UTR	ENST00000336314	ENST00000546308		ChiTaRS3.1			BF841958	LARP1	chr5	154196201	+	HIRA	chr22	19338921	-
3UTR-intron	ENST00000336314	ENST00000464189		ChiTaRS3.1			BF841958	LARP1	chr5	154196201	+	HIRA	chr22	19338921	-
intron-intron	ENST00000265097	ENST00000344532		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000265097	ENST00000430805		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000265097	ENST00000544492		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000265097	ENST00000544904		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000265097	ENST00000481144		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000514861	ENST00000344532		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000514861	ENST00000430805		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000514861	ENST00000544492		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000514861	ENST00000544904		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000514861	ENST00000481144		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000513482	ENST00000344532		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000513482	ENST00000430805		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000513482	ENST00000544492		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000513482	ENST00000544904		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000513482	ENST00000481144		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000510300	ENST00000344532		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000510300	ENST00000430805		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000510300	ENST00000544492		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000510300	ENST00000544904		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000510300	ENST00000481144		ChiTaRS3.1			BF445411	THOC3	chr5	175386686	+	RCBTB2	chr13	49066813	+
intron-intron	ENST00000378466	ENST00000565468		ChiTaRS3.1			BU857222	PANK4	chr1	2439979	-	TMEM178B	chr7	141012933	-
5CDS-intron	ENST00000435556	ENST00000565468		ChiTaRS3.1			BU857222	PANK4	chr1	2439979	-	TMEM178B	chr7	141012933	-
intron-intron	ENST00000491212	ENST00000565468		ChiTaRS3.1			BU857222	PANK4	chr1	2439979	-	TMEM178B	chr7	141012933	-
5CDS-intron	ENST00000370951	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-3UTR	ENST00000370951	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370951	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370951	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370951	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000370951	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000405432	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-3UTR	ENST00000405432	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000405432	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000405432	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000405432	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000405432	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000370950	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-3UTR	ENST00000370950	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370950	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370950	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370950	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000370950	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-intron	ENST00000454435	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-3UTR	ENST00000454435	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-5UTR	ENST00000454435	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-5UTR	ENST00000454435	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-5UTR	ENST00000454435	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-intron	ENST00000454435	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-intron	ENST00000436161	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-3UTR	ENST00000436161	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-5UTR	ENST00000436161	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-5UTR	ENST00000436161	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-5UTR	ENST00000436161	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
intron-intron	ENST00000436161	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-intron	ENST00000484162	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-3UTR	ENST00000484162	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-5UTR	ENST00000484162	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-5UTR	ENST00000484162	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-5UTR	ENST00000484162	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-intron	ENST00000484162	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000370949	ENST00000565905		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-3UTR	ENST00000370949	ENST00000563330		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370949	ENST00000361627		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370949	ENST00000567348		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-5UTR	ENST00000370949	ENST00000563864		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
5CDS-intron	ENST00000370949	ENST00000543522		ChiTaRS3.1			AW949228	SRSF11	chr1	70716144	+	ARHGAP11A	chr15	32908243	+
3UTR-3CDS	ENST00000421974	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000421974	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000456496	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000456496	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000479613	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000479613	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
intron-3CDS	ENST00000606024	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
intron-3CDS	ENST00000606024	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
intron-3CDS	ENST00000464662	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
intron-3CDS	ENST00000464662	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000425642	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
3UTR-3CDS	ENST00000425642	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
intron-3CDS	ENST00000495408	ENST00000455537		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
intron-3CDS	ENST00000495408	ENST00000286452		ChiTaRS3.1			AA976981	ATP6V0E2	chr7	149577589	-	KIF5A	chr12	57963395	-
5CDS-intron	ENST00000382518	ENST00000369219		ChiTaRS3.1			BE840975	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
5CDS-intron	ENST00000009180	ENST00000369219		ChiTaRS3.1			BE840975	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
5CDS-intron	ENST00000382515	ENST00000369219		ChiTaRS3.1			BE840975	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
3UTR-intron	ENST00000481267	ENST00000369219		ChiTaRS3.1			BE840975	CD9	chr12	6344678	+	NBPF14	chr1	145282559	+
intron-3CDS	ENST00000393283	ENST00000382582		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000393283	ENST00000355994		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000393283	ENST00000397875		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000393283	ENST00000397866		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000393283	ENST00000397865		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000393283	ENST00000527041		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000393283	ENST00000359645		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000528160		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000397869		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000354542		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000526111		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000580402		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000579129		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000578193		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000397863		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000397860		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000393283	ENST00000487778		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000382582		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000355994		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000397875		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000397866		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000397865		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000527041		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000272454	ENST00000359645		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000528160		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000397869		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000354542		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000526111		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000580402		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000579129		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000578193		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000397863		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000397860		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000272454	ENST00000487778		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000382582		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000355994		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000397875		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000397866		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000397865		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000527041		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000016946	ENST00000359645		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000528160		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000397869		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000354542		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000526111		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000580402		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000579129		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000578193		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000397863		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000397860		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000016946	ENST00000487778		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000382582		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000355994		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000397875		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000397866		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000397865		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000527041		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-3CDS	ENST00000495582	ENST00000359645		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000528160		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000397869		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000354542		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000526111		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000580402		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000579129		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000578193		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000397863		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000397860		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000495582	ENST00000487778		ChiTaRS3.1			DA172694	RGPD5	chr2	113190958	-	MBP	chr18	74702019	-
intron-intron	ENST00000375742	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376059		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376049		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000414149		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000419376		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000425748		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000416422		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000413349		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000415830		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383474		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000488491		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383473		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000440907		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000549432		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000424944		ChiTaRS3.1			BM761792	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000538442	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000538442	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000538442	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000399150	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000399150	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000399150	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000252229	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000252229	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000252229	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000427115	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000427115	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000427115	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000442104	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000442104	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000442104	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000451603	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000451603	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000451603	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000546706	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000546706	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000546706	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000438954	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000438954	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000438954	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000458032	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000458032	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000458032	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551950	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551950	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551950	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000437651	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000437651	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000437651	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000383514	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000383514	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000383514	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551608	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551608	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551608	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000436531	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000436531	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000436531	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000436655	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000436655	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000436655	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000547574	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000547574	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000547574	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000400313	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000400313	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000400313	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000428416	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000428416	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000428416	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000549014	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000549014	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000549014	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000428059	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000428059	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000428059	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000451789	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000451789	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000451789	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000443156	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000443156	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000443156	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551960	ENST00000215473		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551960	ENST00000333703		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000551960	ENST00000362095		ChiTaRS3.1			BM785679	MICB	chr6	2586313	-	PCDH11Y	chrY	5207021	-
intron-intron	ENST00000553400	ENST00000516892		ChiTaRS3.1			BP349452	DDX24	chr14	94545656	-	MEG3	chr14	101321233	+
intron-intron	ENST00000330836	ENST00000516892		ChiTaRS3.1			BP349452	DDX24	chr14	94545656	-	MEG3	chr14	101321233	+
intron-intron	ENST00000544005	ENST00000516892		ChiTaRS3.1			BP349452	DDX24	chr14	94545656	-	MEG3	chr14	101321233	+
intron-intron	ENST00000555054	ENST00000516892		ChiTaRS3.1			BP349452	DDX24	chr14	94545656	-	MEG3	chr14	101321233	+
intron-intron	ENST00000396153	ENST00000330430		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000371374		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000306764		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000405162		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000330430		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000371374		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000306764		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000405162		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000330430		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000371374		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000306764		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000405162		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000330430		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000371374		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000306764		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000405162		ChiTaRS3.1			BF954283	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000524555	ENST00000406870		ChiTaRS3.1			BC070312	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-intron	ENST00000524555	ENST00000232014		ChiTaRS3.1			BC070312	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-intron	ENST00000524555	ENST00000450123		ChiTaRS3.1			BC070312	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
intron-intron	ENST00000524555	ENST00000496823		ChiTaRS3.1			BC070312	SAA2-SAA4	chr11	18267498	-	BCL6	chr3	187456457	-
3UTR-intron	ENST00000353703	ENST00000282561		ChiTaRS3.1			DB142934	YWHAB	chr20	43535161	+	GJA1	chr6	121756829	+
5CDS-intron	ENST00000479421	ENST00000282561		ChiTaRS3.1			DB142934	YWHAB	chr20	43535161	+	GJA1	chr6	121756829	+
3UTR-intron	ENST00000372839	ENST00000282561		ChiTaRS3.1			DB142934	YWHAB	chr20	43535161	+	GJA1	chr6	121756829	+
intron-3UTR	ENST00000577297	ENST00000326005		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000577297	ENST00000560258		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000577297	ENST00000559753		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-intron	ENST00000577297	ENST00000560837		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000498979	ENST00000326005		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000498979	ENST00000560258		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000498979	ENST00000559753		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-intron	ENST00000498979	ENST00000560837		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000500970	ENST00000326005		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000500970	ENST00000560258		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000500970	ENST00000559753		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-intron	ENST00000500970	ENST00000560837		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000578923	ENST00000326005		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000578923	ENST00000560258		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000578923	ENST00000559753		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-intron	ENST00000578923	ENST00000560837		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000530002	ENST00000326005		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000530002	ENST00000560258		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-3UTR	ENST00000530002	ENST00000559753		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
intron-intron	ENST00000530002	ENST00000560837		ChiTaRS3.1			AI090341	USP2-AS1	chr11	119289085	+	OAZ2	chr15	64980835	+
5UTR-3CDS	ENST00000302351	ENST00000535741		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000302351	ENST00000510413		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000302351	ENST00000503716		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000302351	ENST00000357115		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-intron	ENST00000302351	ENST00000507224		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000510316	ENST00000535741		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000510316	ENST00000510413		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000510316	ENST00000503716		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000510316	ENST00000357115		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-intron	ENST00000510316	ENST00000507224		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-3CDS	ENST00000509284	ENST00000535741		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-3CDS	ENST00000509284	ENST00000510413		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-5UTR	ENST00000509284	ENST00000503716		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-5UTR	ENST00000509284	ENST00000357115		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
intron-intron	ENST00000509284	ENST00000507224		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000537006	ENST00000535741		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-3CDS	ENST00000537006	ENST00000510413		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000537006	ENST00000503716		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-5UTR	ENST00000537006	ENST00000357115		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
5UTR-intron	ENST00000537006	ENST00000507224		ChiTaRS3.1			BE873019	ENC1	chr5	73936130	-	LRBA	chr4	151186964	-
In-frame	ENST00000515064	ENST00000543117		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000515064	ENST00000265393		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000515064	ENST00000409980		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000515064	ENST00000433216		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000515064	ENST00000396319		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
5CDS-intron	ENST00000515064	ENST00000494033		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000441778	ENST00000543117		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000441778	ENST00000265393		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000441778	ENST00000409980		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000441778	ENST00000433216		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000441778	ENST00000396319		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
5CDS-intron	ENST00000441778	ENST00000494033		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000304523	ENST00000543117		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000304523	ENST00000265393		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000304523	ENST00000409980		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000304523	ENST00000433216		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000304523	ENST00000396319		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
5CDS-intron	ENST00000304523	ENST00000494033		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000502640	ENST00000543117		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000502640	ENST00000265393		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000502640	ENST00000409980		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000502640	ENST00000433216		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
In-frame	ENST00000502640	ENST00000396319		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
5CDS-intron	ENST00000502640	ENST00000494033		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503178	ENST00000543117		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503178	ENST00000265393		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503178	ENST00000409980		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503178	ENST00000433216		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503178	ENST00000396319		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-intron	ENST00000503178	ENST00000494033		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503829	ENST00000543117		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503829	ENST00000265393		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503829	ENST00000409980		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503829	ENST00000433216		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-3CDS	ENST00000503829	ENST00000396319		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
intron-intron	ENST00000503829	ENST00000494033		ChiTaRS3.1			BM920574	LDB2	chr4	16899976	-	TAX1BP1	chr7	27867355	+
5CDS-5UTR	ENST00000225964	ENST00000332776		ChiTaRS3.1			AY624558	COL1A1	chr17	48278771	-	USP6	chr17	5033231	+
5CDS-5UTR	ENST00000225964	ENST00000574788		ChiTaRS3.1			AY624558	COL1A1	chr17	48278771	-	USP6	chr17	5033231	+
5CDS-5UTR	ENST00000225964	ENST00000304328		ChiTaRS3.1			AY624558	COL1A1	chr17	48278771	-	USP6	chr17	5033231	+
5CDS-5UTR	ENST00000225964	ENST00000250066		ChiTaRS3.1			AY624558	COL1A1	chr17	48278771	-	USP6	chr17	5033231	+
5CDS-intron	ENST00000225964	ENST00000572429		ChiTaRS3.1			AY624558	COL1A1	chr17	48278771	-	USP6	chr17	5033231	+
In-frame	ENST00000315368	ENST00000394609		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000405240		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000357376		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000317610		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000357732		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000337526		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000394611		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000315368	ENST00000404909		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
5CDS-5UTR	ENST00000315368	ENST00000486085		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
5CDS-5UTR	ENST00000315368	ENST00000354474		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
5CDS-5UTR	ENST00000315368	ENST00000402434		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000394609		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000405240		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000357376		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000317610		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000357732		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000337526		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000394611		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
In-frame	ENST00000510092	ENST00000404909		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
5CDS-5UTR	ENST00000510092	ENST00000486085		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
5CDS-5UTR	ENST00000510092	ENST00000354474		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
5CDS-5UTR	ENST00000510092	ENST00000402434		ChiTaRS3.1			W68688	ANAPC4	chr4	25419961	-	RTN4	chr2	55209717	+
intron-intron	ENST00000535741	ENST00000535741		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000510413		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000503716		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000357115		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000507224		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000535741		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000510413		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000503716		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000357115		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000507224		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000535741		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000510413		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000503716		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000357115		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000507224		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000535741		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000510413		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000503716		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000357115		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000507224		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000535741		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000510413		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000503716		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000357115		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000507224		ChiTaRS3.1			AW991969	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-3CDS	ENST00000424085	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000424085	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000424085	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000424085	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000424085	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000257075	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000257075	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000257075	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000257075	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000257075	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373747	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373747	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373747	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000373747	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000373747	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000426105	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000426105	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000426105	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000426105	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000426105	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000440538	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000440538	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000440538	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000440538	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000440538	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373741	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373741	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373741	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000373741	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000373741	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000423018	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000423018	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000423018	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000423018	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000423018	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373742	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373742	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000373742	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000373742	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000373742	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000490546	ENST00000262510		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000490546	ENST00000436936		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000490546	ENST00000308149		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000490546	ENST00000543141		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-intron	ENST00000490546	ENST00000539144		ChiTaRS3.1			DB332141	PUM1	chr1	31448407	+	NLRC5	chr16	57063920	-
intron-3CDS	ENST00000530157	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000530157	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000530157	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000525451	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000525451	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000525451	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000308162	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000308162	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000308162	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000527344	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000527344	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000527344	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000531407	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000531407	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000531407	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000524553	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000524553	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000524553	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000534769	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000534769	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000534769	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000531413	ENST00000539054		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000531413	ENST00000379757		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-3CDS	ENST00000531413	ENST00000473453		ChiTaRS3.1			BP358611	CFL1	chr11	65622881	-	TXNDC5	chr6	7883469	-
intron-intron	ENST00000592983	ENST00000396420		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000371984		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000371992		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000535522		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000371986		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-5UTR	ENST00000592983	ENST00000485714		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000396420		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000371984		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000371992		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000535522		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000371986		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-5UTR	ENST00000328396	ENST00000485714		ChiTaRS3.1			AI376808	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000464611	ENST00000599539		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000464611	ENST00000339471		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000464611	ENST00000251453		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000464611	ENST00000601655		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000331789	ENST00000599539		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000331789	ENST00000339471		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000331789	ENST00000251453		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000331789	ENST00000601655		ChiTaRS3.1			BG473536	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-3CDS	ENST00000040877	ENST00000259371		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-3CDS	ENST00000040877	ENST00000408936		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-3CDS	ENST00000040877	ENST00000309989		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-intron	ENST00000040877	ENST00000487716		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-3CDS	ENST00000483404	ENST00000259371		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-3CDS	ENST00000483404	ENST00000408936		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-3CDS	ENST00000483404	ENST00000309989		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
intron-intron	ENST00000483404	ENST00000487716		ChiTaRS3.1			BQ720946	TARBP1	chr1	234534190	-	DAB2IP	chr9	124538502	+
3UTR-3CDS	ENST00000534336	ENST00000311528		ChiTaRS3.1			CR748210	MALAT1	chr11	65268002	+	RPL13	chr16	89629402	+
3UTR-3CDS	ENST00000534336	ENST00000567815		ChiTaRS3.1			CR748210	MALAT1	chr11	65268002	+	RPL13	chr16	89629402	+
3UTR-3CDS	ENST00000534336	ENST00000452368		ChiTaRS3.1			CR748210	MALAT1	chr11	65268002	+	RPL13	chr16	89629402	+
3UTR-3CDS	ENST00000534336	ENST00000393099		ChiTaRS3.1			CR748210	MALAT1	chr11	65268002	+	RPL13	chr16	89629402	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BE699321	CDR1	chrX	139865335	-	CDR1	chrX	139866825	-
intron-3UTR	ENST00000372990	ENST00000336868		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000372990	ENST00000577098		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000372990	ENST00000575801		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000372990	ENST00000538650		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000372990	ENST00000537628		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
5CDS-3UTR	ENST00000289248	ENST00000336868		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
5CDS-intron	ENST00000289248	ENST00000577098		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
5CDS-3UTR	ENST00000289248	ENST00000575801		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
5CDS-intron	ENST00000289248	ENST00000538650		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
5CDS-intron	ENST00000289248	ENST00000537628		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000538156	ENST00000336868		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000538156	ENST00000577098		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000538156	ENST00000575801		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000538156	ENST00000538650		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000538156	ENST00000537628		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000372985	ENST00000336868		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000372985	ENST00000577098		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000372985	ENST00000575801		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000372985	ENST00000538650		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000372985	ENST00000537628		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000540558	ENST00000336868		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000540558	ENST00000577098		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-3UTR	ENST00000540558	ENST00000575801		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000540558	ENST00000538650		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
intron-intron	ENST00000540558	ENST00000537628		ChiTaRS3.1			AK000442	RHBDL2	chr1	39351968	-	NXN	chr17	703054	-
3UTR-3UTR	ENST00000274712	ENST00000417718		ChiTaRS3.1			BE149780	ZMAT2	chr5	140085783	+	PVALB	chr22	37196860	-
3UTR-3UTR	ENST00000274712	ENST00000216200		ChiTaRS3.1			BE149780	ZMAT2	chr5	140085783	+	PVALB	chr22	37196860	-
3UTR-3UTR	ENST00000274712	ENST00000404171		ChiTaRS3.1			BE149780	ZMAT2	chr5	140085783	+	PVALB	chr22	37196860	-
intron-3UTR	ENST00000381095	ENST00000296674		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381095	ENST00000510210		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381095	ENST00000512493		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381095	ENST00000510019		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381095	ENST00000507980		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381095	ENST00000503605		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381095	ENST00000511844		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381093	ENST00000296674		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381093	ENST00000510210		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381093	ENST00000512493		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381093	ENST00000510019		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381093	ENST00000507980		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381093	ENST00000503605		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381093	ENST00000511844		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000275857	ENST00000296674		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000275857	ENST00000510210		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000275857	ENST00000512493		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000275857	ENST00000510019		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000275857	ENST00000507980		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000275857	ENST00000503605		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000275857	ENST00000511844		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381092	ENST00000296674		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381092	ENST00000510210		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381092	ENST00000512493		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381092	ENST00000510019		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000381092	ENST00000507980		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381092	ENST00000503605		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000381092	ENST00000511844		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000538097	ENST00000296674		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000538097	ENST00000510210		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000538097	ENST00000512493		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000538097	ENST00000510019		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000538097	ENST00000507980		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000538097	ENST00000503605		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000538097	ENST00000511844		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000469740	ENST00000296674		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000469740	ENST00000510210		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000469740	ENST00000512493		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000469740	ENST00000510019		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-3UTR	ENST00000469740	ENST00000507980		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000469740	ENST00000503605		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
intron-intron	ENST00000469740	ENST00000511844		ChiTaRS3.1			AI889745	NLGN4X	chrX	6143763	+	RPS23	chr5	81571879	+
Frame-shit	ENST00000330137	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000330137	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000330137	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000330137	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000330137	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-3CDS	ENST00000580541	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-3CDS	ENST00000580541	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-intron	ENST00000580541	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-intron	ENST00000580541	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-intron	ENST00000580541	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000578105	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000578105	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000578105	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000578105	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000578105	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5UTR-3CDS	ENST00000583927	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5UTR-3CDS	ENST00000583927	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5UTR-intron	ENST00000583927	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5UTR-intron	ENST00000583927	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5UTR-intron	ENST00000583927	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000581068	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000581068	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000581068	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000581068	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000581068	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-3CDS	ENST00000437036	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-3CDS	ENST00000437036	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-intron	ENST00000437036	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-intron	ENST00000437036	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-intron	ENST00000437036	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000583380	ENST00000431794		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
Frame-shit	ENST00000583380	ENST00000268852		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000583380	ENST00000586007		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000583380	ENST00000544606		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
5CDS-intron	ENST00000583380	ENST00000590081		ChiTaRS3.1			XX000019	SKA2	chr17	57232491	-	MYO19	chr17	34863764	-
intron-3CDS	ENST00000531709	ENST00000326648		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000531709	ENST00000416172		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000531709	ENST00000559364		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-3CDS	ENST00000294172	ENST00000326648		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000294172	ENST00000416172		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000294172	ENST00000559364		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-3CDS	ENST00000532297	ENST00000326648		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000532297	ENST00000416172		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000532297	ENST00000559364		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-3CDS	ENST00000533048	ENST00000326648		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000533048	ENST00000416172		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000533048	ENST00000559364		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-3CDS	ENST00000531131	ENST00000326648		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000531131	ENST00000416172		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000531131	ENST00000559364		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-3CDS	ENST00000439713	ENST00000326648		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000439713	ENST00000416172		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000439713	ENST00000559364		ChiTaRS3.1			AW197217	NXF1	chr11	62559859	+	ZNF609	chr15	64968372	-
intron-intron	ENST00000302053	ENST00000375631		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000302053	ENST00000423382		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000302053	ENST00000439648		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000302053	ENST00000434496		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000302053	ENST00000422978		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000302053	ENST00000229725		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000302053	ENST00000437432		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-3UTR	ENST00000302053	ENST00000411774		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000375631		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000423382		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000439648		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000434496		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000422978		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000229725		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-intron	ENST00000403106	ENST00000437432		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
intron-3UTR	ENST00000403106	ENST00000411774		ChiTaRS3.1			AA345305	FGA	chr4	155507732	-	NEU1	chr6	3160127	-
3UTR-3UTR	ENST00000339754	ENST00000392668		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-intron	ENST00000339754	ENST00000525404		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-3UTR	ENST00000339754	ENST00000345075		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-3UTR	ENST00000339754	ENST00000535549		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-3UTR	ENST00000339754	ENST00000526145		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-intron	ENST00000339754	ENST00000531611		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-intron	ENST00000339754	ENST00000319397		ChiTaRS3.1			AA621984	NECAP1	chr12	8250151	-	ETS1	chr11	128331193	+
3UTR-intron	ENST00000604411	ENST00000367988		ChiTaRS3.1			Z30425	TSIX	chrX	73042000	-	TOMM40L	chr1	161207961	-
3UTR-intron	ENST00000604411	ENST00000545897		ChiTaRS3.1			Z30425	TSIX	chrX	73042000	-	TOMM40L	chr1	161207961	-
3UTR-intron	ENST00000604411	ENST00000474486		ChiTaRS3.1			Z30425	TSIX	chrX	73042000	-	TOMM40L	chr1	161207961	-
3UTR-intron	ENST00000604411	ENST00000367987		ChiTaRS3.1			Z30425	TSIX	chrX	73042000	-	TOMM40L	chr1	161207961	-
In-frame	ENST00000534358	ENST00000503238		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000358350		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000537810		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000264319		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000507711		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000514783		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000507873		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000506685		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000503238		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000358350		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000537810		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000264319		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000507711		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000514783		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000507873		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000506685		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000503238		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000358350		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000537810		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000354520	ENST00000264319		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000507711		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000514783		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000354520	ENST00000507873		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000506685		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000503238		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000358350		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000537810		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-5UTR	ENST00000420751	ENST00000264319		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000507711		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000514783		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-5UTR	ENST00000420751	ENST00000507873		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000506685		ChiTaRS3.1			DQ299937	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
Frame-shit	ENST00000602361	ENST00000248553		ChiTaRS3.1			N36356	RMRP	chr9	35657753	-	HSPB1	chr7	75932236	+
5CDS-intron	ENST00000602361	ENST00000429938		ChiTaRS3.1			N36356	RMRP	chr9	35657753	-	HSPB1	chr7	75932236	+
intron-3CDS	ENST00000280187	ENST00000322644		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-intron	ENST00000280187	ENST00000572844		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-3CDS	ENST00000393658	ENST00000322644		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-intron	ENST00000393658	ENST00000572844		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-3CDS	ENST00000506894	ENST00000322644		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-intron	ENST00000506894	ENST00000572844		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-3CDS	ENST00000515090	ENST00000322644		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-intron	ENST00000515090	ENST00000572844		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-3CDS	ENST00000506219	ENST00000322644		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-intron	ENST00000506219	ENST00000572844		ChiTaRS3.1			DA107051	GPM6A	chr4	176622745	-	POLR2A	chr17	7404138	+
intron-3UTR	ENST00000570101	ENST00000301178		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000570101	ENST00000359092		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000570101	ENST00000594880		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000570101	ENST00000593513		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-3UTR	ENST00000219320	ENST00000301178		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000219320	ENST00000359092		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000219320	ENST00000594880		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000219320	ENST00000593513		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-3UTR	ENST00000564100	ENST00000301178		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564100	ENST00000359092		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564100	ENST00000594880		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564100	ENST00000593513		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-3UTR	ENST00000564010	ENST00000301178		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564010	ENST00000359092		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564010	ENST00000594880		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564010	ENST00000593513		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-3UTR	ENST00000566953	ENST00000301178		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000566953	ENST00000359092		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000566953	ENST00000594880		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000566953	ENST00000593513		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-3UTR	ENST00000564391	ENST00000301178		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564391	ENST00000359092		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564391	ENST00000594880		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-intron	ENST00000564391	ENST00000593513		ChiTaRS3.1			BX477897	SLC38A7	chr16	58714003	-	AXL	chr19	41766248	+
intron-5UTR	ENST00000338316	ENST00000589786		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000338316	ENST00000284006		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000338316	ENST00000588881		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000338316	ENST00000430256		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-intron	ENST00000338316	ENST00000592363		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000537121	ENST00000589786		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000537121	ENST00000284006		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000537121	ENST00000588881		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000537121	ENST00000430256		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-intron	ENST00000537121	ENST00000592363		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000513693	ENST00000589786		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000513693	ENST00000284006		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000513693	ENST00000588881		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-5UTR	ENST00000513693	ENST00000430256		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
intron-intron	ENST00000513693	ENST00000592363		ChiTaRS3.1			CN301511	ADCY2	chr1	152005194	-	KCTD15	chr19	34291354	+
Frame-shit	ENST00000261798	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
5CDS-intron	ENST00000261798	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
Frame-shit	ENST00000377843	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
5CDS-intron	ENST00000377843	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-3CDS	ENST00000515435	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-intron	ENST00000515435	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-3CDS	ENST00000504676	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-intron	ENST00000504676	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
Frame-shit	ENST00000515768	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
5CDS-intron	ENST00000515768	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-3CDS	ENST00000606719	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-intron	ENST00000606719	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-3CDS	ENST00000606299	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-intron	ENST00000606299	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
Frame-shit	ENST00000515748	ENST00000333628		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
5CDS-intron	ENST00000515748	ENST00000489942		ChiTaRS3.1			BF525947	CSNK1A1	chr5	148930404	-	TUBB2A	chr6	3154114	-
intron-3CDS	ENST00000547511	ENST00000321556		ChiTaRS3.1			CD723935	LACRT	chr12	55026094	-	PINK1	chr1	20964531	+
intron-intron	ENST00000547511	ENST00000492302		ChiTaRS3.1			CD723935	LACRT	chr12	55026094	-	PINK1	chr1	20964531	+
intron-3CDS	ENST00000257867	ENST00000321556		ChiTaRS3.1			CD723935	LACRT	chr12	55026094	-	PINK1	chr1	20964531	+
intron-intron	ENST00000257867	ENST00000492302		ChiTaRS3.1			CD723935	LACRT	chr12	55026094	-	PINK1	chr1	20964531	+
intron-3CDS	ENST00000452313	ENST00000302907		ChiTaRS3.1			BQ063558	NPIPB7	chr16	28857291	-	RPS9	chr19	54705436	+
intron-3CDS	ENST00000452313	ENST00000391752		ChiTaRS3.1			BQ063558	NPIPB7	chr16	28857291	-	RPS9	chr19	54705436	+
intron-3CDS	ENST00000452313	ENST00000402367		ChiTaRS3.1			BQ063558	NPIPB7	chr16	28857291	-	RPS9	chr19	54705436	+
intron-3CDS	ENST00000452313	ENST00000391751		ChiTaRS3.1			BQ063558	NPIPB7	chr16	28857291	-	RPS9	chr19	54705436	+
intron-3CDS	ENST00000452313	ENST00000391753		ChiTaRS3.1			BQ063558	NPIPB7	chr16	28857291	-	RPS9	chr19	54705436	+
intron-3CDS	ENST00000452313	ENST00000441429		ChiTaRS3.1			BQ063558	NPIPB7	chr16	28857291	-	RPS9	chr19	54705436	+
3UTR-3UTR	ENST00000274217	ENST00000371269		ChiTaRS3.1			DA046822	FAM105A	chr5	14610569	+	DHCR24	chr1	55317563	-
3UTR-3UTR	ENST00000274217	ENST00000537443		ChiTaRS3.1			DA046822	FAM105A	chr5	14610569	+	DHCR24	chr1	55317563	-
3UTR-intron	ENST00000274217	ENST00000535035		ChiTaRS3.1			DA046822	FAM105A	chr5	14610569	+	DHCR24	chr1	55317563	-
intron-3UTR	ENST00000506258	ENST00000371269		ChiTaRS3.1			DA046822	FAM105A	chr5	14610569	+	DHCR24	chr1	55317563	-
intron-3UTR	ENST00000506258	ENST00000537443		ChiTaRS3.1			DA046822	FAM105A	chr5	14610569	+	DHCR24	chr1	55317563	-
intron-intron	ENST00000506258	ENST00000535035		ChiTaRS3.1			DA046822	FAM105A	chr5	14610569	+	DHCR24	chr1	55317563	-
intron-3UTR	ENST00000355624	ENST00000444518		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-intron	ENST00000355624	ENST00000466438		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000355624	ENST00000216106		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000369199	ENST00000444518		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-intron	ENST00000369199	ENST00000466438		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000369199	ENST00000216106		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000476207	ENST00000444518		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-intron	ENST00000476207	ENST00000466438		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
intron-3UTR	ENST00000476207	ENST00000216106		ChiTaRS3.1			CN478913	RAB11FIP2	chr10	119774621	+	HMGXB4	chr22	35689736	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM491362	BCR	chr22	23613779	+	ABL1	chr9	133729451	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM491362	BCR	chr22	23613779	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM491362	BCR	chr22	23613779	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM491362	BCR	chr22	23613779	+	ABL1	chr9	133729451	+
intron-3UTR	ENST00000301012	ENST00000261799		ChiTaRS3.1			CA416509	MVD	chr16	88718576	+	PDGFRB	chr5	149493602	+
intron-intron	ENST00000301012	ENST00000523456		ChiTaRS3.1			CA416509	MVD	chr16	88718576	+	PDGFRB	chr5	149493602	+
intron-3UTR	ENST00000568709	ENST00000261799		ChiTaRS3.1			CA416509	MVD	chr16	88718576	+	PDGFRB	chr5	149493602	+
intron-intron	ENST00000568709	ENST00000523456		ChiTaRS3.1			CA416509	MVD	chr16	88718576	+	PDGFRB	chr5	149493602	+
Frame-shit	ENST00000348405	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000348405	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000513858	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000513858	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000395310	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000395310	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000443462	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000443462	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000509142	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000509142	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000326950	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000326950	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000432794	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000432794	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000311785	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000311785	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000448323	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000448323	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000505472	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000505472	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000500777	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000500777	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000508502	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000508502	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
In-frame	ENST00000355196	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000355196	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
intron-3CDS	ENST00000264405	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
intron-intron	ENST00000264405	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000505984	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000505984	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
Frame-shit	ENST00000508479	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5CDS-intron	ENST00000508479	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5UTR-3CDS	ENST00000436790	ENST00000371953		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
5UTR-intron	ENST00000436790	ENST00000472832		ChiTaRS3.1			BI823499	SEC31A	chr4	83799881	-	PTEN	chr10	89725042	+
3UTR-3UTR	ENST00000311506	ENST00000422989		ChiTaRS3.1			AW410195	METTL2A	chr17	60526177	-	IRGQ	chr19	44092477	+
3UTR-intron	ENST00000311506	ENST00000601520		ChiTaRS3.1			AW410195	METTL2A	chr17	60526177	-	IRGQ	chr19	44092477	+
3UTR-intron	ENST00000311506	ENST00000602269		ChiTaRS3.1			AW410195	METTL2A	chr17	60526177	-	IRGQ	chr19	44092477	+
intron-3CDS	ENST00000396432	ENST00000448100		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000396432	ENST00000355969		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000396432	ENST00000357119		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000396432	ENST00000369967		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000396432	ENST00000328969		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-intron	ENST00000396432	ENST00000478385		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000320481	ENST00000448100		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000320481	ENST00000355969		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000320481	ENST00000357119		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000320481	ENST00000369967		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000320481	ENST00000328969		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-intron	ENST00000320481	ENST00000478385		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000493154	ENST00000448100		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000493154	ENST00000355969		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000493154	ENST00000357119		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000493154	ENST00000369967		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-3CDS	ENST00000493154	ENST00000328969		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
intron-intron	ENST00000493154	ENST00000478385		ChiTaRS3.1			BI046659	ARHGAP21	chr10	24874679	-	ZGPAT	chr20	62366635	+
5CDS-5UTR	ENST00000264639	ENST00000303204		ChiTaRS3.1			BC001684	PSMD3	chr17	38151531	+	PRELID1	chr5	176730830	+
5CDS-5UTR	ENST00000264639	ENST00000503216		ChiTaRS3.1			BC001684	PSMD3	chr17	38151531	+	PRELID1	chr5	176730830	+
5CDS-intron	ENST00000264639	ENST00000502670		ChiTaRS3.1			BC001684	PSMD3	chr17	38151531	+	PRELID1	chr5	176730830	+
5CDS-5UTR	ENST00000541736	ENST00000303204		ChiTaRS3.1			BC001684	PSMD3	chr17	38151531	+	PRELID1	chr5	176730830	+
5CDS-5UTR	ENST00000541736	ENST00000503216		ChiTaRS3.1			BC001684	PSMD3	chr17	38151531	+	PRELID1	chr5	176730830	+
5CDS-intron	ENST00000541736	ENST00000502670		ChiTaRS3.1			BC001684	PSMD3	chr17	38151531	+	PRELID1	chr5	176730830	+
3UTR-3CDS	ENST00000466764	ENST00000299421		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
3UTR-3CDS	ENST00000466764	ENST00000537806		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
3UTR-3CDS	ENST00000466764	ENST00000420936		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
3UTR-intron	ENST00000466764	ENST00000528995		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
3UTR-intron	ENST00000466764	ENST00000396751		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
3UTR-3UTR	ENST00000466764	ENST00000526711		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
Frame-shit	ENST00000376759	ENST00000299421		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
Frame-shit	ENST00000376759	ENST00000537806		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
Frame-shit	ENST00000376759	ENST00000420936		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5CDS-intron	ENST00000376759	ENST00000528995		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5CDS-intron	ENST00000376759	ENST00000396751		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5CDS-3UTR	ENST00000376759	ENST00000526711		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5UTR-3CDS	ENST00000430348	ENST00000299421		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5UTR-3CDS	ENST00000430348	ENST00000537806		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5UTR-3CDS	ENST00000430348	ENST00000420936		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5UTR-intron	ENST00000430348	ENST00000528995		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5UTR-intron	ENST00000430348	ENST00000396751		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5UTR-3UTR	ENST00000430348	ENST00000526711		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
Frame-shit	ENST00000376755	ENST00000299421		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
Frame-shit	ENST00000376755	ENST00000537806		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
Frame-shit	ENST00000376755	ENST00000420936		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5CDS-intron	ENST00000376755	ENST00000528995		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5CDS-intron	ENST00000376755	ENST00000396751		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
5CDS-3UTR	ENST00000376755	ENST00000526711		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-3CDS	ENST00000354480	ENST00000299421		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-3CDS	ENST00000354480	ENST00000537806		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-3CDS	ENST00000354480	ENST00000420936		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-intron	ENST00000354480	ENST00000528995		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-intron	ENST00000354480	ENST00000396751		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-3UTR	ENST00000354480	ENST00000526711		ChiTaRS3.1			AA329557	RBM3	chrX	48434003	+	ILK	chr11	6630374	+
intron-3CDS	ENST00000596521	ENST00000367142		ChiTaRS3.1			CN348876	PTOV1-AS1	chr19	50354563	+	NUCKS1	chr1	205696908	-
intron-intron	ENST00000596521	ENST00000464938		ChiTaRS3.1			CN348876	PTOV1-AS1	chr19	50354563	+	NUCKS1	chr1	205696908	-
intron-3CDS	ENST00000600742	ENST00000367142		ChiTaRS3.1			CN348876	PTOV1-AS1	chr19	50354563	+	NUCKS1	chr1	205696908	-
intron-intron	ENST00000600742	ENST00000464938		ChiTaRS3.1			CN348876	PTOV1-AS1	chr19	50354563	+	NUCKS1	chr1	205696908	-
3UTR-intron	ENST00000344063	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000431533	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000428193	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000558815	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
3UTR-intron	ENST00000560583	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000560055	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
5CDS-intron	ENST00000559463	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
5CDS-intron	ENST00000558131	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000558752	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000458349	ENST00000333190		ChiTaRS3.1			BG748632	RPL28	chr19	55899746	+	ZNF804B	chr7	88482071	-
intron-intron	ENST00000295628	ENST00000437232		ChiTaRS3.1			AU120000	LRRC58	chr3	120044613	-	VIM-AS1	chr10	17271276	+
intron-intron	ENST00000295628	ENST00000605833		ChiTaRS3.1			AU120000	LRRC58	chr3	120044613	-	VIM-AS1	chr10	17271276	+
Frame-shit	ENST00000216160	ENST00000309993		ChiTaRS3.1			DA448973	TAB1	chr22	39811148	+	MSL2	chr3	135871582	-
5CDS-5UTR	ENST00000216160	ENST00000434835		ChiTaRS3.1			DA448973	TAB1	chr22	39811148	+	MSL2	chr3	135871582	-
Frame-shit	ENST00000331454	ENST00000309993		ChiTaRS3.1			DA448973	TAB1	chr22	39811148	+	MSL2	chr3	135871582	-
5CDS-5UTR	ENST00000331454	ENST00000434835		ChiTaRS3.1			DA448973	TAB1	chr22	39811148	+	MSL2	chr3	135871582	-
intron-3CDS	ENST00000488859	ENST00000309993		ChiTaRS3.1			DA448973	TAB1	chr22	39811148	+	MSL2	chr3	135871582	-
intron-5UTR	ENST00000488859	ENST00000434835		ChiTaRS3.1			DA448973	TAB1	chr22	39811148	+	MSL2	chr3	135871582	-
5CDS-3UTR	ENST00000369485	ENST00000546390		ChiTaRS3.1			BG183185	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000265607	ENST00000546390		ChiTaRS3.1			BG183185	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000538899	ENST00000546390		ChiTaRS3.1			BG183185	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000369475	ENST00000546390		ChiTaRS3.1			BG183185	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
Frame-shit	ENST00000306065	ENST00000251312		ChiTaRS3.1			BM042250	ANKRD27	chr19	33135230	-	DHRS11	chr17	34951396	+
5CDS-intron	ENST00000306065	ENST00000590554		ChiTaRS3.1			BM042250	ANKRD27	chr19	33135230	-	DHRS11	chr17	34951396	+
5CDS-3UTR	ENST00000306065	ENST00000394445		ChiTaRS3.1			BM042250	ANKRD27	chr19	33135230	-	DHRS11	chr17	34951396	+
Frame-shit	ENST00000587352	ENST00000251312		ChiTaRS3.1			BM042250	ANKRD27	chr19	33135230	-	DHRS11	chr17	34951396	+
5CDS-intron	ENST00000587352	ENST00000590554		ChiTaRS3.1			BM042250	ANKRD27	chr19	33135230	-	DHRS11	chr17	34951396	+
5CDS-3UTR	ENST00000587352	ENST00000394445		ChiTaRS3.1			BM042250	ANKRD27	chr19	33135230	-	DHRS11	chr17	34951396	+
intron-3CDS	ENST00000462405	ENST00000523094		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000462405	ENST00000530742		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000462405	ENST00000296951		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000462405	ENST00000411809		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000462405	ENST00000523908		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370425	ENST00000523094		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370425	ENST00000530742		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370425	ENST00000296951		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370425	ENST00000411809		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370425	ENST00000523908		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000294696	ENST00000523094		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000294696	ENST00000530742		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000294696	ENST00000296951		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000294696	ENST00000411809		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000294696	ENST00000523908		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370424	ENST00000523094		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370424	ENST00000530742		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370424	ENST00000296951		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370424	ENST00000411809		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000370424	ENST00000523908		ChiTaRS3.1			AV749664	HFM1	chr1	91852920	-	CLINT1	chr5	157233016	-
intron-3CDS	ENST00000470422	ENST00000319449		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000470422	ENST00000377001		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000470422	ENST00000437570		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000470422	ENST00000393438		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000470422	ENST00000508797		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000246043	ENST00000319449		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000246043	ENST00000377001		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000246043	ENST00000437570		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000246043	ENST00000393438		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000246043	ENST00000508797		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000377813	ENST00000319449		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000377813	ENST00000377001		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000377813	ENST00000437570		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000377813	ENST00000393438		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000377813	ENST00000508797		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000377807	ENST00000319449		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000377807	ENST00000377001		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000377807	ENST00000437570		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000377807	ENST00000393438		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000377807	ENST00000508797		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000360807	ENST00000319449		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000360807	ENST00000377001		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000360807	ENST00000437570		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000360807	ENST00000393438		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000360807	ENST00000508797		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000455029	ENST00000319449		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-3CDS	ENST00000455029	ENST00000377001		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000455029	ENST00000437570		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000455029	ENST00000393438		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000455029	ENST00000508797		ChiTaRS3.1			BC046249	RRBP1	chr20	17600318	-	RUFY1	chr5	178977829	+
intron-intron	ENST00000382582	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000382582	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
5CDS-intron	ENST00000355994	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397875	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397866	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397865	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000527041	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000359645	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000528160	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397869	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000354542	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000526111	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000580402	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000579129	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000578193	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397863	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000397860	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000377715		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000409009		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000264448		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000487778	ENST00000464408		ChiTaRS3.1			AV723294	MBP	chr18	74690794	-	ALMS1	chr2	73823368	-
intron-intron	ENST00000390168	ENST00000475381		ChiTaRS3.1			AF074689	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000273512		ChiTaRS3.1			AF074689	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000538775		ChiTaRS3.1			AF074689	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000543711		ChiTaRS3.1			AF074689	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-5UTR	ENST00000419783	ENST00000379660		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-intron	ENST00000419783	ENST00000339306		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-intron	ENST00000419783	ENST00000426876		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-5UTR	ENST00000419349	ENST00000379660		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-intron	ENST00000419349	ENST00000339306		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-intron	ENST00000419349	ENST00000426876		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-5UTR	ENST00000496791	ENST00000379660		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-intron	ENST00000496791	ENST00000339306		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-intron	ENST00000496791	ENST00000426876		ChiTaRS3.1			AA995621	GPX1	chr3	49394752	+	SLC35B3	chr6	8435434	+
intron-5UTR	ENST00000311528	ENST00000357037		ChiTaRS3.1			DB270526	RPL13	chr16	89627908	+	PTRF	chr17	40575274	-
intron-5UTR	ENST00000567815	ENST00000357037		ChiTaRS3.1			DB270526	RPL13	chr16	89627908	+	PTRF	chr17	40575274	-
intron-5UTR	ENST00000452368	ENST00000357037		ChiTaRS3.1			DB270526	RPL13	chr16	89627908	+	PTRF	chr17	40575274	-
intron-5UTR	ENST00000393099	ENST00000357037		ChiTaRS3.1			DB270526	RPL13	chr16	89627908	+	PTRF	chr17	40575274	-
intron-3UTR	ENST00000360620	ENST00000316084		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-intron	ENST00000360620	ENST00000486733		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-intron	ENST00000360620	ENST00000373626		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-3UTR	ENST00000358173	ENST00000316084		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-intron	ENST00000358173	ENST00000486733		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-intron	ENST00000358173	ENST00000373626		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-3UTR	ENST00000477446	ENST00000316084		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-intron	ENST00000477446	ENST00000486733		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-intron	ENST00000477446	ENST00000373626		ChiTaRS3.1			BG151410	EPHB4	chr7	100410417	-	RPS4X	chrX	71492503	-
intron-3CDS	ENST00000266771	ENST00000324856		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000266771	ENST00000457599		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000266771	ENST00000374152		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-intron	ENST00000266771	ENST00000540690		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000545031	ENST00000324856		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000545031	ENST00000457599		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000545031	ENST00000374152		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-intron	ENST00000545031	ENST00000540690		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000544112	ENST00000324856		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000544112	ENST00000457599		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000544112	ENST00000374152		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-intron	ENST00000544112	ENST00000540690		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000539703	ENST00000324856		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000539703	ENST00000457599		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-3CDS	ENST00000539703	ENST00000374152		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
intron-intron	ENST00000539703	ENST00000540690		ChiTaRS3.1			DB203290	SLC15A4	chr12	129283892	-	ARID1A	chr1	27057880	+
3UTR-intron	ENST00000229239	ENST00000530124		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000229239	ENST00000257247		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000229239	ENST00000525875		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000229239	ENST00000378024		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396856	ENST00000530124		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396856	ENST00000257247		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396856	ENST00000525875		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396856	ENST00000378024		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396861	ENST00000530124		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396861	ENST00000257247		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396861	ENST00000525875		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396861	ENST00000378024		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396859	ENST00000530124		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396859	ENST00000257247		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396859	ENST00000525875		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396859	ENST00000378024		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396858	ENST00000530124		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-intron	ENST00000396858	ENST00000257247		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396858	ENST00000525875		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
3UTR-5UTR	ENST00000396858	ENST00000378024		ChiTaRS3.1			BQ019603	GAPDH	chr12	6647423	-	AHNAK	chr11	62284554	+
5CDS-intron	ENST00000304987	ENST00000244769		ChiTaRS3.1			BI009934	SIK2	chr11	111594363	+	ATXN1	chr6	16545248	-
5CDS-intron	ENST00000304987	ENST00000436367		ChiTaRS3.1			BI009934	SIK2	chr11	111594363	+	ATXN1	chr6	16545248	-
5CDS-intron	ENST00000304987	ENST00000467008		ChiTaRS3.1			BI009934	SIK2	chr11	111594363	+	ATXN1	chr6	16545248	-
intron-intron	ENST00000533868	ENST00000244769		ChiTaRS3.1			BI009934	SIK2	chr11	111594363	+	ATXN1	chr6	16545248	-
intron-intron	ENST00000533868	ENST00000436367		ChiTaRS3.1			BI009934	SIK2	chr11	111594363	+	ATXN1	chr6	16545248	-
intron-intron	ENST00000533868	ENST00000467008		ChiTaRS3.1			BI009934	SIK2	chr11	111594363	+	ATXN1	chr6	16545248	-
intron-3CDS	ENST00000350425	ENST00000334828		ChiTaRS3.1			CN393630	ATP7A	chrX	77223635	-	PGAM1	chr10	99192262	+
intron-3UTR	ENST00000350425	ENST00000467867		ChiTaRS3.1			CN393630	ATP7A	chrX	77223635	-	PGAM1	chr10	99192262	+
intron-3CDS	ENST00000343533	ENST00000334828		ChiTaRS3.1			CN393630	ATP7A	chrX	77223635	-	PGAM1	chr10	99192262	+
intron-3UTR	ENST00000343533	ENST00000467867		ChiTaRS3.1			CN393630	ATP7A	chrX	77223635	-	PGAM1	chr10	99192262	+
intron-3CDS	ENST00000341514	ENST00000334828		ChiTaRS3.1			CN393630	ATP7A	chrX	77223635	-	PGAM1	chr10	99192262	+
intron-3UTR	ENST00000341514	ENST00000467867		ChiTaRS3.1			CN393630	ATP7A	chrX	77223635	-	PGAM1	chr10	99192262	+
intron-3CDS	ENST00000418917	ENST00000389048		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-intron	ENST00000418917	ENST00000431873		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-intron	ENST00000418917	ENST00000498037		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
In-frame	ENST00000490574	ENST00000389048		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000490574	ENST00000431873		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000490574	ENST00000498037		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
In-frame	ENST00000240851	ENST00000389048		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000240851	ENST00000431873		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000240851	ENST00000498037		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000476228	ENST00000389048		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-intron	ENST00000476228	ENST00000431873		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-intron	ENST00000476228	ENST00000498037		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000481203	ENST00000389048		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-intron	ENST00000481203	ENST00000431873		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-intron	ENST00000481203	ENST00000498037		ChiTaRS3.1			AF390893	TFG	chr3	100455560	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000439727	ENST00000458591		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000439727	ENST00000421551		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000439727	ENST00000544052		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000439727	ENST00000541123		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000439727	ENST00000396629		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000439727	ENST00000554486		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000439348	ENST00000458591		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000439348	ENST00000421551		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000439348	ENST00000544052		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000439348	ENST00000541123		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000439348	ENST00000396629		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000439348	ENST00000554486		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000389961	ENST00000458591		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000389961	ENST00000421551		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000389961	ENST00000544052		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000389961	ENST00000541123		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000389961	ENST00000396629		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000389961	ENST00000554486		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000543095	ENST00000458591		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000543095	ENST00000421551		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000543095	ENST00000544052		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000543095	ENST00000541123		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000543095	ENST00000396629		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000543095	ENST00000554486		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000404677	ENST00000458591		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000404677	ENST00000421551		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000404677	ENST00000544052		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000404677	ENST00000541123		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000404677	ENST00000396629		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000404677	ENST00000554486		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000382464	ENST00000458591		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000382464	ENST00000421551		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-3CDS	ENST00000382464	ENST00000544052		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000382464	ENST00000541123		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000382464	ENST00000396629		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
intron-intron	ENST00000382464	ENST00000554486		ChiTaRS3.1			DA686614	HEATR5A	chr14	31922468	-	SCFD1	chr14	31108982	+
3UTR-3UTR	ENST00000545834	ENST00000265981		ChiTaRS3.1			AK292402	PFAS	chr17	8172675	+	RNF141	chr11	10533982	-
3UTR-intron	ENST00000545834	ENST00000528665		ChiTaRS3.1			AK292402	PFAS	chr17	8172675	+	RNF141	chr11	10533982	-
3UTR-3UTR	ENST00000314666	ENST00000265981		ChiTaRS3.1			AK292402	PFAS	chr17	8172675	+	RNF141	chr11	10533982	-
3UTR-intron	ENST00000314666	ENST00000528665		ChiTaRS3.1			AK292402	PFAS	chr17	8172675	+	RNF141	chr11	10533982	-
intron-3UTR	ENST00000585319	ENST00000265981		ChiTaRS3.1			AK292402	PFAS	chr17	8172675	+	RNF141	chr11	10533982	-
intron-intron	ENST00000585319	ENST00000528665		ChiTaRS3.1			AK292402	PFAS	chr17	8172675	+	RNF141	chr11	10533982	-
5CDS-3UTR	ENST00000498623	ENST00000320892		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-intron	ENST00000498623	ENST00000467276		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-3UTR	ENST00000287613	ENST00000320892		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-intron	ENST00000287613	ENST00000467276		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-3UTR	ENST00000397261	ENST00000320892		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-intron	ENST00000397261	ENST00000467276		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-3UTR	ENST00000433034	ENST00000320892		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
5CDS-intron	ENST00000433034	ENST00000467276		ChiTaRS3.1			DA770894	ARPC4	chr3	9845586	+	RNF144A	chr2	7183862	+
intron-3CDS	ENST00000431992	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000431992	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-3CDS	ENST00000373422	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000373422	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-3CDS	ENST00000257118	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000257118	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-3CDS	ENST00000419414	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000419414	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-3CDS	ENST00000373416	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000373416	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-3CDS	ENST00000485928	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000485928	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-3CDS	ENST00000373418	ENST00000372447		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
intron-5UTR	ENST00000373418	ENST00000461762		ChiTaRS3.1			BF854186	PHC2	chr1	33847807	-	C9orf78	chr9	132595760	-
5CDS-intron	ENST00000216268	ENST00000483195		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000394019		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000423644		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000346834		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000359484		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000357822		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000358683		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000377632		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
5CDS-intron	ENST00000216268	ENST00000377634		ChiTaRS3.1			AK311081	ZBED4	chr22	50277430	+	SLC4A5	chr2	74618972	-
intron-intron	ENST00000397887	ENST00000593786		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000397887	ENST00000374796		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000397887	ENST00000359003		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000330938	ENST00000593786		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000330938	ENST00000374796		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000330938	ENST00000359003		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000445724	ENST00000593786		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000445724	ENST00000374796		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000445724	ENST00000359003		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000397886	ENST00000593786		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000397886	ENST00000374796		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000397886	ENST00000359003		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000494690	ENST00000593786		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000494690	ENST00000374796		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-intron	ENST00000494690	ENST00000359003		ChiTaRS3.1			AL706432	PTTG1IP	chr21	46270424	-	NCOA6	chr20	33345891	-
intron-3CDS	ENST00000390548	ENST00000502463		ChiTaRS3.1			BM804611	IGHG1	chr14	106330795	-	CASC11	chr8	128746210	-
intron-3CDS	ENST00000290949	ENST00000304921		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000290949	ENST00000407445		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000290949	ENST00000403564		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000290949	ENST00000406376		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000540149	ENST00000304921		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000540149	ENST00000407445		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000540149	ENST00000403564		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000540149	ENST00000406376		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000602876	ENST00000304921		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000602876	ENST00000407445		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000602876	ENST00000403564		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000602876	ENST00000406376		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000567694	ENST00000304921		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000567694	ENST00000407445		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000567694	ENST00000403564		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
intron-3CDS	ENST00000567694	ENST00000406376		ChiTaRS3.1			BP272543	ATP6V0D1	chr16	67487514	-	RPS7	chr2	3623414	+
In-frame	ENST00000392894	ENST00000513024		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000509638		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000508501		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000512946		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000313860		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000512632		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000512820		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000503057		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000511496		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000514096		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000509277		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000396595		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000381753		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000509454		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000392894	ENST00000515785		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
In-frame	ENST00000344229	ENST00000513024		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000509638		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000508501		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000512946		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000313860		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000512632		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000512820		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000503057		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000511496		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000514096		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000509277		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000396595		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000381753		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000509454		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-intron	ENST00000344229	ENST00000515785		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-3CDS	ENST00000361785	ENST00000513024		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000509638		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000508501		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000512946		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000313860		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000512632		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000512820		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000503057		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000511496		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000514096		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000509277		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000396595		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000381753		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000509454		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5UTR-intron	ENST00000361785	ENST00000515785		ChiTaRS3.1			DA317546	RNF13	chr3	149589944	+	LIMCH1	chr4	41652408	+
5CDS-5UTR	ENST00000398022	ENST00000248437		ChiTaRS3.1			DA812020	TM9SF4	chr20	30729350	+	TUBA4A	chr2	220118638	-
5CDS-intron	ENST00000398022	ENST00000392088		ChiTaRS3.1			DA812020	TM9SF4	chr20	30729350	+	TUBA4A	chr2	220118638	-
5CDS-intron	ENST00000398022	ENST00000498660		ChiTaRS3.1			DA812020	TM9SF4	chr20	30729350	+	TUBA4A	chr2	220118638	-
5CDS-5UTR	ENST00000217315	ENST00000248437		ChiTaRS3.1			DA812020	TM9SF4	chr20	30729350	+	TUBA4A	chr2	220118638	-
5CDS-intron	ENST00000217315	ENST00000392088		ChiTaRS3.1			DA812020	TM9SF4	chr20	30729350	+	TUBA4A	chr2	220118638	-
5CDS-intron	ENST00000217315	ENST00000498660		ChiTaRS3.1			DA812020	TM9SF4	chr20	30729350	+	TUBA4A	chr2	220118638	-
intron-3CDS	ENST00000303391	ENST00000248089		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000303391	ENST00000574151		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000303391	ENST00000396916		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000303391	ENST00000572355		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000303391	ENST00000574980		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000303391	ENST00000354679		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000453960	ENST00000248089		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000453960	ENST00000574151		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000453960	ENST00000396916		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000453960	ENST00000572355		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000453960	ENST00000574980		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000453960	ENST00000354679		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000407218	ENST00000248089		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000407218	ENST00000574151		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000407218	ENST00000396916		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000407218	ENST00000572355		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000407218	ENST00000574980		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000407218	ENST00000354679		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000460227	ENST00000248089		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000460227	ENST00000574151		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-3CDS	ENST00000460227	ENST00000396916		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000460227	ENST00000572355		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000460227	ENST00000574980		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000460227	ENST00000354679		ChiTaRS3.1			BQ877133	MECP2	chrX	153289664	-	HCFC1R1	chr16	3073898	-
intron-intron	ENST00000435634	ENST00000558518		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000435634	ENST00000557933		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000435634	ENST00000455727		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000435634	ENST00000535915		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000435634	ENST00000545707		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000435634	ENST00000558013		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000435634	ENST00000560628		ChiTaRS3.1			BU631838	EXOSC6	chr16	70284296	+	LDLR	chr19	11243622	-
intron-intron	ENST00000344157	ENST00000481781		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000344157	ENST00000397270		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000355665	ENST00000481781		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000355665	ENST00000397270		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000579690	ENST00000481781		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000579690	ENST00000397270		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000552105	ENST00000481781		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000552105	ENST00000397270		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000550485	ENST00000481781		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
intron-intron	ENST00000550485	ENST00000397270		ChiTaRS3.1			H54543	YTHDC1	chr4	10485	-	INS-IGF2	chr11	2154868	-
3UTR-3CDS	ENST00000260102	ENST00000495075		ChiTaRS3.1			BM465902	MRPL15	chr8	55060452	+	MRPS22	chr3	139069829	+
3UTR-3CDS	ENST00000260102	ENST00000310776		ChiTaRS3.1			BM465902	MRPL15	chr8	55060452	+	MRPS22	chr3	139069829	+
3UTR-3CDS	ENST00000260102	ENST00000465056		ChiTaRS3.1			BM465902	MRPL15	chr8	55060452	+	MRPS22	chr3	139069829	+
3UTR-3CDS	ENST00000260102	ENST00000478464		ChiTaRS3.1			BM465902	MRPL15	chr8	55060452	+	MRPS22	chr3	139069829	+
3UTR-intron	ENST00000260102	ENST00000489521		ChiTaRS3.1			BM465902	MRPL15	chr8	55060452	+	MRPS22	chr3	139069829	+
In-frame	ENST00000353364	ENST00000375217		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000353364	ENST00000375226		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000353364	ENST00000375267		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000353364	ENST00000375254		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000353364	ENST00000375225		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000353364	ENST00000429347		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000353364	ENST00000375224		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000353364	ENST00000543981		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000353364	ENST00000467272		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000353364	ENST00000375218		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000280377	ENST00000375217		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000280377	ENST00000375226		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000280377	ENST00000375267		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000280377	ENST00000375254		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000280377	ENST00000375225		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000280377	ENST00000429347		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000280377	ENST00000375224		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000280377	ENST00000543981		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000280377	ENST00000467272		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000280377	ENST00000375218		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000393654	ENST00000375217		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000393654	ENST00000375226		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000393654	ENST00000375267		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000393654	ENST00000375254		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000393654	ENST00000375225		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000393654	ENST00000429347		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000393654	ENST00000375224		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000393654	ENST00000543981		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000393654	ENST00000467272		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
5CDS-intron	ENST00000393654	ENST00000375218		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000550632	ENST00000375217		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000550632	ENST00000375226		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000550632	ENST00000375267		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000550632	ENST00000375254		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000550632	ENST00000375225		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000550632	ENST00000429347		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000550632	ENST00000375224		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000550632	ENST00000543981		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000550632	ENST00000467272		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000550632	ENST00000375218		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000312635	ENST00000375217		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000312635	ENST00000375226		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000312635	ENST00000375267		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-3CDS	ENST00000312635	ENST00000375254		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000312635	ENST00000375225		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000312635	ENST00000429347		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000312635	ENST00000375224		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000312635	ENST00000543981		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000312635	ENST00000467272		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
intron-intron	ENST00000312635	ENST00000375218		ChiTaRS3.1			BQ320184	USP15	chr12	62783768	+	UBR4	chr1	19480362	-
In-frame	ENST00000278826	ENST00000496972		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000405222		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000407661		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000406818		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000407038		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000404103		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000407186		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000288642		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000278826	ENST00000545439		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5CDS-intron	ENST00000278826	ENST00000472690		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000496972		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000405222		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000407661		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000406818		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000407038		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000404103		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000407186		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000288642		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000542946	ENST00000545439		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5CDS-intron	ENST00000542946	ENST00000472690		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000496972		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000405222		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000407661		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000406818		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000407038		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000404103		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000407186		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000288642		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-3CDS	ENST00000540194	ENST00000545439		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
3UTR-intron	ENST00000540194	ENST00000472690		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000496972		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000405222		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000407661		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000406818		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000407038		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000404103		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000407186		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000288642		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
In-frame	ENST00000381787	ENST00000545439		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5CDS-intron	ENST00000381787	ENST00000472690		ChiTaRS3.1			BQ056742	TMEM138	chr11	61133688	+	DTNB	chr2	25754467	-
5UTR-5UTR	ENST00000418342	ENST00000378609		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
5UTR-5UTR	ENST00000418342	ENST00000472614		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
5UTR-5UTR	ENST00000302291	ENST00000378609		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
5UTR-5UTR	ENST00000302291	ENST00000472614		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
5UTR-5UTR	ENST00000314174	ENST00000378609		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
5UTR-5UTR	ENST00000314174	ENST00000472614		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
intron-5UTR	ENST00000374623	ENST00000378609		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
intron-5UTR	ENST00000374623	ENST00000472614		ChiTaRS3.1			DA668677	LUZP1	chr1	23495259	-	GNB1	chr1	1770679	-
5CDS-5UTR	ENST00000360540	ENST00000378454		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-intron	ENST00000360540	ENST00000378450		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-5UTR	ENST00000544451	ENST00000378454		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-intron	ENST00000544451	ENST00000378450		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5UTR-5UTR	ENST00000519559	ENST00000378454		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5UTR-intron	ENST00000519559	ENST00000378450		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-5UTR	ENST00000522514	ENST00000378454		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
5CDS-intron	ENST00000522514	ENST00000378450		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-5UTR	ENST00000521344	ENST00000378454		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
intron-intron	ENST00000521344	ENST00000378450		ChiTaRS3.1			BC014954	PCMTD1	chr8	52758220	-	DCDC2	chr6	24358075	-
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			D13979	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-3UTR	ENST00000262133	ENST00000336095		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
5CDS-3UTR	ENST00000262133	ENST00000358395		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
5CDS-3UTR	ENST00000262133	ENST00000432261		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
5CDS-intron	ENST00000262133	ENST00000545616		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
3UTR-3UTR	ENST00000379935	ENST00000336095		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
3UTR-3UTR	ENST00000379935	ENST00000358395		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
3UTR-3UTR	ENST00000379935	ENST00000432261		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
3UTR-intron	ENST00000379935	ENST00000545616		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
intron-3UTR	ENST00000544545	ENST00000336095		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
intron-3UTR	ENST00000544545	ENST00000358395		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
intron-3UTR	ENST00000544545	ENST00000432261		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
intron-intron	ENST00000544545	ENST00000545616		ChiTaRS3.1			BP430628	RBL2	chr16	53504467	+	RNF24	chr20	3914085	-
intron-3CDS	ENST00000333229	ENST00000397278		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000426053		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000422706		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000319136		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000347595		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000397279		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000333229	ENST00000440669		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000397278		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000426053		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000422706		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000319136		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000347595		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000397279		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000342449	ENST00000440669		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000397278		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000426053		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000422706		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000319136		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000347595		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000397279		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000380800	ENST00000440669		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000397278		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000426053		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000422706		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000319136		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000347595		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000397279		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000341322	ENST00000440669		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000397278		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000426053		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000422706		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000319136		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000347595		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000397279		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000470108	ENST00000440669		ChiTaRS3.1			BF900659	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
In-frame	ENST00000415083	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000415083	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000415083	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542420	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542743	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000539849	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000269137	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000545952	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000336777		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000337502		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-5UTR	ENST00000585241	ENST00000476392		ChiTaRS3.1			AB300356	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-intron	ENST00000323848	ENST00000474524		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000323848	ENST00000273432		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000323848	ENST00000491549		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000323848	ENST00000422248		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000323848	ENST00000309237		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000447431	ENST00000474524		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000447431	ENST00000273432		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000447431	ENST00000491549		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000447431	ENST00000422248		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000447431	ENST00000309237		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000374389	ENST00000474524		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000374389	ENST00000273432		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000374389	ENST00000491549		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000374389	ENST00000422248		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
5CDS-intron	ENST00000374389	ENST00000309237		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
3UTR-intron	ENST00000479034	ENST00000474524		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
3UTR-intron	ENST00000479034	ENST00000273432		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
3UTR-intron	ENST00000479034	ENST00000491549		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
3UTR-intron	ENST00000479034	ENST00000422248		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
3UTR-intron	ENST00000479034	ENST00000309237		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
intron-intron	ENST00000537199	ENST00000474524		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
intron-intron	ENST00000537199	ENST00000273432		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
intron-intron	ENST00000537199	ENST00000491549		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
intron-intron	ENST00000537199	ENST00000422248		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
intron-intron	ENST00000537199	ENST00000309237		ChiTaRS3.1			D81412	SRRM1	chr1	24973218	+	MED12L	chr3	151055841	-
3UTR-3CDS	ENST00000534336	ENST00000413702		ChiTaRS3.1			BX487700	MALAT1	chr11	65266893	+	MUC7	chr4	71339738	+
3UTR-3CDS	ENST00000534336	ENST00000456088		ChiTaRS3.1			BX487700	MALAT1	chr11	65266893	+	MUC7	chr4	71339738	+
3UTR-3CDS	ENST00000534336	ENST00000304887		ChiTaRS3.1			BX487700	MALAT1	chr11	65266893	+	MUC7	chr4	71339738	+
3UTR-intron	ENST00000534336	ENST00000514512		ChiTaRS3.1			BX487700	MALAT1	chr11	65266893	+	MUC7	chr4	71339738	+
In-frame	ENST00000382582	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000382582	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000382582	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000382582	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000382582	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
Frame-shit	ENST00000355994	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000355994	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000355994	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000355994	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000355994	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000397875	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397875	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397875	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397875	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397875	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000397866	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397866	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397866	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397866	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397866	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000397865	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397865	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397865	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397865	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397865	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000527041	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000527041	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000527041	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000527041	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000527041	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000359645	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000359645	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000359645	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000359645	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000359645	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-3CDS	ENST00000528160	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000528160	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000528160	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000528160	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000528160	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000397869	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397869	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000397869	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397869	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000397869	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000354542	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000354542	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000354542	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000354542	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000354542	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000526111	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000526111	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000526111	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000526111	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000526111	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000580402	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000580402	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000580402	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000580402	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000580402	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
Frame-shit	ENST00000579129	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000579129	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000579129	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000579129	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000579129	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
In-frame	ENST00000578193	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000578193	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-5UTR	ENST00000578193	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000578193	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
5CDS-intron	ENST00000578193	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-3CDS	ENST00000397863	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000397863	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000397863	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000397863	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000397863	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-3CDS	ENST00000397860	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000397860	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000397860	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000397860	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000397860	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-3CDS	ENST00000487778	ENST00000319481		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000487778	ENST00000399443		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-5UTR	ENST00000487778	ENST00000357041		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000487778	ENST00000399441		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
intron-intron	ENST00000487778	ENST00000582618		ChiTaRS3.1			DA198061	MBP	chr18	74728783	-	OSBPL1A	chr18	21819348	-
3UTR-3UTR	ENST00000367635	ENST00000354772		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367635	ENST00000397260		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-5UTR	ENST00000367635	ENST00000474057		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367635	ENST00000206544		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367635	ENST00000397267		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367634	ENST00000354772		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367634	ENST00000397260		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-5UTR	ENST00000367634	ENST00000474057		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367634	ENST00000206544		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
3UTR-3UTR	ENST00000367634	ENST00000397267		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
intron-3UTR	ENST00000477383	ENST00000354772		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
intron-3UTR	ENST00000477383	ENST00000397260		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
intron-5UTR	ENST00000477383	ENST00000474057		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
intron-3UTR	ENST00000477383	ENST00000206544		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
intron-3UTR	ENST00000477383	ENST00000397267		ChiTaRS3.1			BX112360	RALGPS2	chr1	178885580	+	SLC22A17	chr14	23815616	-
5CDS-intron	ENST00000539909	ENST00000539563		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000539909	ENST00000490035		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000539909	ENST00000498645		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000286621	ENST00000539563		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000286621	ENST00000490035		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000286621	ENST00000498645		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000372734	ENST00000539563		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000372734	ENST00000490035		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000372734	ENST00000498645		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000541550	ENST00000539563		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000541550	ENST00000490035		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
5CDS-intron	ENST00000541550	ENST00000498645		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
intron-intron	ENST00000467840	ENST00000539563		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
intron-intron	ENST00000467840	ENST00000490035		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
intron-intron	ENST00000467840	ENST00000498645		ChiTaRS3.1			BE699173	ADK	chr10	76158276	+	LSAMP	chr3	115918640	-
intron-3UTR	ENST00000193403	ENST00000223095		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000193403	ENST00000445463		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000394419	ENST00000223095		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000394419	ENST00000445463		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000438964	ENST00000223095		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000438964	ENST00000445463		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000376839	ENST00000223095		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000376839	ENST00000445463		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000538545	ENST00000223095		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000538545	ENST00000445463		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000554508	ENST00000223095		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
intron-3UTR	ENST00000554508	ENST00000445463		ChiTaRS3.1			M95178	ACTN1	chr14	69341536	-	SERPINE1	chr7	100782273	+
In-frame	ENST00000167106	ENST00000332981		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
In-frame	ENST00000167106	ENST00000555082		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
5CDS-intron	ENST00000167106	ENST00000556245		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
In-frame	ENST00000554237	ENST00000332981		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
In-frame	ENST00000554237	ENST00000555082		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
5CDS-intron	ENST00000554237	ENST00000556245		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
intron-3CDS	ENST00000556038	ENST00000332981		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
intron-3CDS	ENST00000556038	ENST00000555082		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
intron-intron	ENST00000556038	ENST00000556245		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
intron-3CDS	ENST00000554743	ENST00000332981		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
intron-3CDS	ENST00000554743	ENST00000555082		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
intron-intron	ENST00000554743	ENST00000556245		ChiTaRS3.1			DA951876	VASH1	chr14	77229474	+	PRKCH	chr14	61952218	+
5CDS-intron	ENST00000290291	ENST00000338591		ChiTaRS3.1			DA497127	OGFR	chr20	61439670	+	KLHL17	chr1	897600	+
5CDS-intron	ENST00000370461	ENST00000338591		ChiTaRS3.1			DA497127	OGFR	chr20	61439670	+	KLHL17	chr1	897600	+
intron-3CDS	ENST00000535225	ENST00000370577		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000535225	ENST00000370570		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000358657	ENST00000370577		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000358657	ENST00000370570		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000453097	ENST00000370577		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000453097	ENST00000370570		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000394856	ENST00000370577		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000394856	ENST00000370570		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000514353	ENST00000370577		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000514353	ENST00000370570		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000546663	ENST00000370577		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000546663	ENST00000370570		ChiTaRS3.1			BC036413	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-intron	ENST00000377869	ENST00000398896		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000377869	ENST00000398898		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000377869	ENST00000417901		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000377869	ENST00000453664		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000377869	ENST00000398892		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000377869	ENST00000398888		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000377869	ENST00000434032		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000377869	ENST00000488993		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000220616	ENST00000398896		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000220616	ENST00000398898		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000220616	ENST00000417901		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000220616	ENST00000453664		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000220616	ENST00000398892		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000220616	ENST00000398888		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000220616	ENST00000434032		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000220616	ENST00000488993		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000542445	ENST00000398896		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000542445	ENST00000398898		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000542445	ENST00000417901		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000542445	ENST00000453664		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000542445	ENST00000398892		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000542445	ENST00000398888		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000542445	ENST00000434032		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000542445	ENST00000488993		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000519543	ENST00000398896		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000519543	ENST00000398898		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000519543	ENST00000417901		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000519543	ENST00000453664		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000519543	ENST00000398892		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000519543	ENST00000398888		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000519543	ENST00000434032		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000519543	ENST00000488993		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000522523	ENST00000398896		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000522523	ENST00000398898		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000522523	ENST00000417901		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000522523	ENST00000453664		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000522523	ENST00000398892		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-3UTR	ENST00000522523	ENST00000398888		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000522523	ENST00000434032		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
intron-intron	ENST00000522523	ENST00000488993		ChiTaRS3.1			CR986635	TG	chr8	134052334	-	USP19	chr3	49146167	-
Frame-shit	ENST00000395535	ENST00000596341		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000395535	ENST00000599913		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000395535	ENST00000594369		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-3UTR	ENST00000395535	ENST00000335841		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
In-frame	ENST00000352861	ENST00000596341		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000352861	ENST00000599913		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000352861	ENST00000594369		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-3UTR	ENST00000352861	ENST00000335841		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
In-frame	ENST00000415949	ENST00000596341		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000415949	ENST00000599913		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000415949	ENST00000594369		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-3UTR	ENST00000415949	ENST00000335841		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
In-frame	ENST00000450622	ENST00000596341		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000450622	ENST00000599913		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-intron	ENST00000450622	ENST00000594369		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
5CDS-3UTR	ENST00000450622	ENST00000335841		ChiTaRS3.1			W28426	SEC61G	chr7	54823471	-	ZNF446	chr19	58991868	-
3UTR-3UTR	ENST00000381470	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000381470	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000432128	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000432128	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000443491	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000443491	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
intron-3UTR	ENST00000517600	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
intron-3UTR	ENST00000517600	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523782	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523782	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000265800	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000265800	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000415253	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000415253	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000358242	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000358242	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523266	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000523266	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000519907	ENST00000394936		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
3UTR-3UTR	ENST00000519907	ENST00000394934		ChiTaRS3.1			BQ028419	DMTN	chr8	21939855	-	PSAP	chr10	73576180	+
intron-3CDS	ENST00000275605	ENST00000170564		ChiTaRS3.1			CA430683	PSPH	chr7	56148239	-	GPATCH1	chr19	33605259	-
intron-3CDS	ENST00000395471	ENST00000170564		ChiTaRS3.1			CA430683	PSPH	chr7	56148239	-	GPATCH1	chr19	33605259	-
intron-3CDS	ENST00000459834	ENST00000170564		ChiTaRS3.1			CA430683	PSPH	chr7	56148239	-	GPATCH1	chr19	33605259	-
Frame-shit	ENST00000336761	ENST00000402746		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000336761	ENST00000399654		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000336761	ENST00000406869		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000336761	ENST00000265854		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
5CDS-intron	ENST00000336761	ENST00000486340		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000402746		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000399654		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000406869		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
Frame-shit	ENST00000233078	ENST00000265854		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
5CDS-intron	ENST00000233078	ENST00000486340		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000402746		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000399654		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000406869		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-3CDS	ENST00000586579	ENST00000265854		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
3UTR-intron	ENST00000586579	ENST00000486340		ChiTaRS3.1			CD049770	DAZAP1	chr19	1407802	+	MAD1L1	chr7	1976534	-
5UTR-3CDS	ENST00000229395	ENST00000357248		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000229395	ENST00000349721		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000229395	ENST00000382203		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000229395	ENST00000382194		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000491574		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000324954		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000302401		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000382186		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000229395	ENST00000382185		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000357248		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000349721		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000382203		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000546072	ENST00000382194		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000491574		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000324954		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000302401		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000382186		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000546072	ENST00000382185		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000357248		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000349721		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000382203		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-3CDS	ENST00000327214	ENST00000382194		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000491574		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000324954		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000302401		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000382186		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
5UTR-intron	ENST00000327214	ENST00000382185		ChiTaRS3.1			BC066596	FGFR1OP2	chr12	27091643	+	SMARCA2	chr9	2181571	+
intron-intron	ENST00000378954	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000378954	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000378954	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000378954	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000378954	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000378954	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000378954	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000406122	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000406122	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000406122	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000406122	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000406122	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000406122	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000402054	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000402054	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000402054	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000402054	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000402054	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000402054	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000539122	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000539122	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000539122	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000539122	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000539122	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000539122	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000332337	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000332337	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000332337	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000332337	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000332337	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000332337	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000419554	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000419554	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000419554	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000419554	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000419554	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000419554	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000452935	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000452935	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000452935	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000452935	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000452935	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000452935	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000546051	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000546051	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000546051	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000546051	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000546051	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000546051	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000403829		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000486927	ENST00000298687		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000486927	ENST00000350792		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000486927	ENST00000397858		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000554104		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000555158		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000553503		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000397853		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000486927	ENST00000360463		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000556147		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000397856		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000397855		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000554143		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000397851		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-5UTR	ENST00000486927	ENST00000397847		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000298684		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000397844		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-intron	ENST00000486927	ENST00000554277		ChiTaRS3.1			DB179338	ATL2	chr2	38522877	-	NDRG2	chr14	21493861	-
intron-3UTR	ENST00000577066	ENST00000262085		ChiTaRS3.1			DR002447	BAIAP2-AS1	chr17	79005245	-	ZNF282	chr7	148922357	+
intron-intron	ENST00000577066	ENST00000479907		ChiTaRS3.1			DR002447	BAIAP2-AS1	chr17	79005245	-	ZNF282	chr7	148922357	+
5CDS-3UTR	ENST00000306726	ENST00000368865		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000538238		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368859		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368858		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000481952		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000564970	ENST00000368865		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000538238		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368859		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368858		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000481952		ChiTaRS3.1			BG220202	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000603175	ENST00000533141		ChiTaRS3.1			AI082075	LBX2-AS1	chr2	74732253	+	IFITM2	chr11	309308	-
intron-3UTR	ENST00000603175	ENST00000399817		ChiTaRS3.1			AI082075	LBX2-AS1	chr2	74732253	+	IFITM2	chr11	309308	-
intron-3UTR	ENST00000603175	ENST00000602569		ChiTaRS3.1			AI082075	LBX2-AS1	chr2	74732253	+	IFITM2	chr11	309308	-
intron-intron	ENST00000548978	ENST00000533141		ChiTaRS3.1			AI082075	LBX2-AS1	chr2	74732253	+	IFITM2	chr11	309308	-
intron-3UTR	ENST00000548978	ENST00000399817		ChiTaRS3.1			AI082075	LBX2-AS1	chr2	74732253	+	IFITM2	chr11	309308	-
intron-3UTR	ENST00000548978	ENST00000602569		ChiTaRS3.1			AI082075	LBX2-AS1	chr2	74732253	+	IFITM2	chr11	309308	-
Frame-shit	ENST00000261891	ENST00000178640		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000560591		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000395476		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000354498		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000340972		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000457488	ENST00000178640		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000560591		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000395476		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000354498		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000340972		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000558069	ENST00000178640		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000560591		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000395476		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000354498		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000340972		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-3CDS	ENST00000558482	ENST00000178640		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000560591		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000395476		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000354498		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000340972		ChiTaRS3.1			BE328057	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
Frame-shit	ENST00000362005	ENST00000254770		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000362005	ENST00000486376		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000370389	ENST00000254770		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000370389	ENST00000486376		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000399546	ENST00000254770		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000399546	ENST00000486376		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000394530	ENST00000254770		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000394530	ENST00000486376		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
Frame-shit	ENST00000402388	ENST00000254770		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
5CDS-intron	ENST00000402388	ENST00000486376		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
intron-3CDS	ENST00000484781	ENST00000254770		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
intron-intron	ENST00000484781	ENST00000486376		ChiTaRS3.1			BC031675	BRDT	chr1	92433748	+	LANCL2	chr7	55459489	+
3UTR-intron	ENST00000248553	ENST00000264042		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000248553	ENST00000545004		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000248553	ENST00000373287		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000248553	ENST00000479427		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000429938	ENST00000264042		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000429938	ENST00000545004		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000429938	ENST00000373287		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
3UTR-intron	ENST00000429938	ENST00000479427		ChiTaRS3.1			AI470274	HSPB1	chr7	75933548	-	FARP2	chr2	242382741	-
intron-3CDS	ENST00000408742	ENST00000407106		ChiTaRS3.1			BU955820	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000261755		ChiTaRS3.1			BU955820	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000561421		ChiTaRS3.1			BU955820	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000539156		ChiTaRS3.1			BU955820	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3UTR	ENST00000408742	ENST00000558627		ChiTaRS3.1			BU955820	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
5CDS-intron	ENST00000409600	ENST00000320895		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409600	ENST00000507807		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409600	ENST00000320927		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409600	ENST00000506641		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409226	ENST00000320895		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409226	ENST00000507807		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409226	ENST00000320927		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000409226	ENST00000506641		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000452790	ENST00000320895		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000452790	ENST00000507807		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000452790	ENST00000320927		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5CDS-intron	ENST00000452790	ENST00000506641		ChiTaRS3.1			BF990040	BZW1	chr2	201683603	+	CLPTM1L	chr5	1326749	-
5UTR-3UTR	ENST00000273047	ENST00000254101		ChiTaRS3.1			DA947002	RAB5A	chr3	19988773	+	PRKAB2	chr1	146628469	-
5UTR-intron	ENST00000273047	ENST00000496858		ChiTaRS3.1			DA947002	RAB5A	chr3	19988773	+	PRKAB2	chr1	146628469	-
5UTR-intron	ENST00000273047	ENST00000425272		ChiTaRS3.1			DA947002	RAB5A	chr3	19988773	+	PRKAB2	chr1	146628469	-
intron-3UTR	ENST00000422242	ENST00000254101		ChiTaRS3.1			DA947002	RAB5A	chr3	19988773	+	PRKAB2	chr1	146628469	-
intron-intron	ENST00000422242	ENST00000496858		ChiTaRS3.1			DA947002	RAB5A	chr3	19988773	+	PRKAB2	chr1	146628469	-
intron-intron	ENST00000422242	ENST00000425272		ChiTaRS3.1			DA947002	RAB5A	chr3	19988773	+	PRKAB2	chr1	146628469	-
intron-5UTR	ENST00000345843	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000345843	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000345843	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000345843	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000345843	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000342295	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000342295	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000342295	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000342295	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000342295	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000361572	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000361572	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000361572	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000361572	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000361572	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000348160	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000348160	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000348160	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000348160	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000348160	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000355476	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000355476	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000355476	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000355476	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000355476	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000511401	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000511401	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000511401	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000511401	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000511401	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000507561	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000507561	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000507561	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000507561	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000507561	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000504907	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000504907	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000504907	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-5UTR	ENST00000504907	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
intron-intron	ENST00000504907	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
3UTR-5UTR	ENST00000342320	ENST00000307363		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
3UTR-intron	ENST00000342320	ENST00000399402		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
3UTR-5UTR	ENST00000342320	ENST00000445488		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
3UTR-5UTR	ENST00000342320	ENST00000307377		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
3UTR-intron	ENST00000342320	ENST00000497796		ChiTaRS3.1			AU125113	RBPJ	chr4	26435359	+	GLB1	chr3	33138610	-
5CDS-intron	ENST00000517296	ENST00000352035		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000590151		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000353196		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000537919		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000393896		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000588779		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000352035		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000590151		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000353196		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000537919		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000393896		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000588779		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000352035		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000590151		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000353196		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000537919		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000393896		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000588779		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000352035		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000590151		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000353196		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000537919		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000393896		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000588779		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000352035		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000590151		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000353196		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000537919		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000393896		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000588779		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000352035		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000590151		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000353196		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000537919		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000393896		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000588779		ChiTaRS3.1			BE840542	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-3CDS	ENST00000441210	ENST00000369005		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000513429		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000515273		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000515603		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000453444		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000358010		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000334433		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000369001		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000369000		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000360561		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000368999		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000369004		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000260733		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-intron	ENST00000441210	ENST00000493951		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369005		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000513429		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000515273		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000515603		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000453444		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000358010		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000334433		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369001		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369000		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000360561		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000368999		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369004		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000260733		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-intron	ENST00000457433	ENST00000493951		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369005		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000513429		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000515273		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000515603		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000453444		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000358010		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000334433		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369001		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369000		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000360561		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000368999		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369004		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000260733		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-intron	ENST00000271064	ENST00000493951		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369005		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000513429		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000515273		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000515603		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000453444		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000358010		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000334433		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369001		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369000		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000360561		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000368999		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369004		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000260733		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-intron	ENST00000537531	ENST00000493951		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369005		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000513429		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000515273		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000515603		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000453444		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000358010		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000334433		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369001		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369000		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000360561		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000368999		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369004		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000260733		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-intron	ENST00000481165	ENST00000493951		ChiTaRS3.1			CK821400	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
5CDS-intron	ENST00000379312	ENST00000338316		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000379312	ENST00000537121		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000379312	ENST00000513693		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
intron-intron	ENST00000566522	ENST00000338316		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
intron-intron	ENST00000566522	ENST00000537121		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
intron-intron	ENST00000566522	ENST00000513693		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000042381	ENST00000338316		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000042381	ENST00000537121		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000042381	ENST00000513693		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000540839	ENST00000338316		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000540839	ENST00000537121		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000540839	ENST00000513693		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000422602	ENST00000338316		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000422602	ENST00000537121		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000422602	ENST00000513693		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000428437	ENST00000338316		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000428437	ENST00000537121		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
5CDS-intron	ENST00000428437	ENST00000513693		ChiTaRS3.1			BM015985	FAM65A	chr16	67576690	+	ADCY2	chr1	152005064	-
intron-intron	ENST00000368715	ENST00000467129		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368715	ENST00000381808		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368715	ENST00000381812		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368715	ENST00000339987		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368715	ENST00000360779		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000481009	ENST00000467129		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000481009	ENST00000381808		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000481009	ENST00000381812		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000481009	ENST00000339987		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000481009	ENST00000360779		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000354332	ENST00000467129		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000354332	ENST00000381808		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000354332	ENST00000381812		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000354332	ENST00000339987		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000354332	ENST00000360779		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368716	ENST00000467129		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368716	ENST00000381808		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368716	ENST00000381812		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368716	ENST00000339987		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368716	ENST00000360779		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368714	ENST00000467129		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368714	ENST00000381808		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368714	ENST00000381812		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368714	ENST00000339987		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-intron	ENST00000368714	ENST00000360779		ChiTaRS3.1			CB118649	S100A4	chr1	153518296	+	SDCBP2	chr20	1352887	-
intron-3UTR	ENST00000395131	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374606	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374610	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374607	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000463584	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000445559	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000452658	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000448594	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547952	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000491095	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000412289	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000425878	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000442285	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000552711	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000474406	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000431830	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000432391	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000451970	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547641	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000468094	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399385	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399383	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000383207	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000548040	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000482292	ENST00000293677		ChiTaRS3.1			BC018887	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-intron	ENST00000296658	ENST00000296658		ChiTaRS3.1			AW970392	CMBL	chr5	10279949	-	CMBL	chr19	50989708	+
intron-intron	ENST00000296658	ENST00000510532		ChiTaRS3.1			AW970392	CMBL	chr5	10279949	-	CMBL	chr19	50989708	+
intron-intron	ENST00000510532	ENST00000296658		ChiTaRS3.1			AW970392	CMBL	chr5	10279949	-	CMBL	chr19	50989708	+
intron-intron	ENST00000510532	ENST00000510532		ChiTaRS3.1			AW970392	CMBL	chr5	10279949	-	CMBL	chr19	50989708	+
intron-3CDS	ENST00000589328	ENST00000355431		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000589328	ENST00000348476		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000589328	ENST00000395168		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000589328	ENST00000431317		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-intron	ENST00000589328	ENST00000553355		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000355431		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000348476		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000395168		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000431317		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-intron	ENST00000409746	ENST00000553355		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000355431		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000348476		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000395168		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000431317		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-intron	ENST00000588801	ENST00000553355		ChiTaRS3.1			BI024708	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
Frame-shit	ENST00000342280	ENST00000293217		ChiTaRS3.1			AK310985	GJA4	chr1	35260326	+	ACOX1	chr17	73947559	-
Frame-shit	ENST00000342280	ENST00000537812		ChiTaRS3.1			AK310985	GJA4	chr1	35260326	+	ACOX1	chr17	73947559	-
Frame-shit	ENST00000342280	ENST00000301608		ChiTaRS3.1			AK310985	GJA4	chr1	35260326	+	ACOX1	chr17	73947559	-
5CDS-intron	ENST00000342280	ENST00000591857		ChiTaRS3.1			AK310985	GJA4	chr1	35260326	+	ACOX1	chr17	73947559	-
In-frame	ENST00000320717	ENST00000261313		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
5CDS-3UTR	ENST00000320717	ENST00000542939		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
In-frame	ENST00000338435	ENST00000261313		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
5CDS-3UTR	ENST00000338435	ENST00000542939		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3CDS	ENST00000409626	ENST00000261313		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3UTR	ENST00000409626	ENST00000542939		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3CDS	ENST00000409428	ENST00000261313		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3UTR	ENST00000409428	ENST00000542939		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3CDS	ENST00000409215	ENST00000261313		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3UTR	ENST00000409215	ENST00000542939		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3CDS	ENST00000471443	ENST00000261313		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
intron-3UTR	ENST00000471443	ENST00000542939		ChiTaRS3.1			BI481206	GLS	chr2	191760395	+	PEBP1	chr12	118582465	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			BE813534	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-intron	ENST00000597960	ENST00000533902		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000597960	ENST00000280258		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000597960	ENST00000441050		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000597960	ENST00000531521		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000610101	ENST00000533902		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000610101	ENST00000280258		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000610101	ENST00000441050		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000610101	ENST00000531521		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000596558	ENST00000533902		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000596558	ENST00000280258		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000596558	ENST00000441050		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000596558	ENST00000531521		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000222308	ENST00000533902		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000222308	ENST00000280258		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000222308	ENST00000441050		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000222308	ENST00000531521		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000608443	ENST00000533902		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000608443	ENST00000280258		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000608443	ENST00000441050		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000608443	ENST00000531521		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000453489	ENST00000533902		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000453489	ENST00000280258		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000453489	ENST00000441050		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-intron	ENST00000453489	ENST00000531521		ChiTaRS3.1			BQ421142	FKBP8	chr19	18652550	-	PRSS23	chr11	86518710	+
intron-3CDS	ENST00000398944	ENST00000331768		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398944	ENST00000329331		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398944	ENST00000436070		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-5UTR	ENST00000398944	ENST00000453938		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000380876	ENST00000331768		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000380876	ENST00000329331		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000380876	ENST00000436070		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-5UTR	ENST00000380876	ENST00000453938		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398943	ENST00000331768		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398943	ENST00000329331		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-3CDS	ENST00000398943	ENST00000436070		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
intron-5UTR	ENST00000398943	ENST00000453938		ChiTaRS3.1			BQ221463	EIF3CL	chr16	28394571	-	SETD3	chr14	99929874	-
In-frame	ENST00000398022	ENST00000232978		ChiTaRS3.1			AK302439	TM9SF4	chr20	30734652	+	NKTR	chr3	42687441	+
5CDS-intron	ENST00000398022	ENST00000460910		ChiTaRS3.1			AK302439	TM9SF4	chr20	30734652	+	NKTR	chr3	42687441	+
5CDS-intron	ENST00000398022	ENST00000442970		ChiTaRS3.1			AK302439	TM9SF4	chr20	30734652	+	NKTR	chr3	42687441	+
In-frame	ENST00000217315	ENST00000232978		ChiTaRS3.1			AK302439	TM9SF4	chr20	30734652	+	NKTR	chr3	42687441	+
5CDS-intron	ENST00000217315	ENST00000460910		ChiTaRS3.1			AK302439	TM9SF4	chr20	30734652	+	NKTR	chr3	42687441	+
5CDS-intron	ENST00000217315	ENST00000442970		ChiTaRS3.1			AK302439	TM9SF4	chr20	30734652	+	NKTR	chr3	42687441	+
intron-intron	ENST00000326402	ENST00000453363		ChiTaRS3.1			AK096714	SLC36A4	chr11	92899518	-	CSH1	chr17	61973143	-
intron-intron	ENST00000326402	ENST00000316193		ChiTaRS3.1			AK096714	SLC36A4	chr11	92899518	-	CSH1	chr17	61973143	-
intron-intron	ENST00000326402	ENST00000329882		ChiTaRS3.1			AK096714	SLC36A4	chr11	92899518	-	CSH1	chr17	61973143	-
intron-intron	ENST00000529184	ENST00000453363		ChiTaRS3.1			AK096714	SLC36A4	chr11	92899518	-	CSH1	chr17	61973143	-
intron-intron	ENST00000529184	ENST00000316193		ChiTaRS3.1			AK096714	SLC36A4	chr11	92899518	-	CSH1	chr17	61973143	-
intron-intron	ENST00000529184	ENST00000329882		ChiTaRS3.1			AK096714	SLC36A4	chr11	92899518	-	CSH1	chr17	61973143	-
intron-3CDS	ENST00000573984	ENST00000324460		ChiTaRS3.1			AI191499	CYB5D2	chr17	4060827	-	HSPA5	chr9	128000443	+
3UTR-3CDS	ENST00000575251	ENST00000324460		ChiTaRS3.1			AI191499	CYB5D2	chr17	4060827	-	HSPA5	chr9	128000443	+
3UTR-3CDS	ENST00000301391	ENST00000324460		ChiTaRS3.1			AI191499	CYB5D2	chr17	4060827	-	HSPA5	chr9	128000443	+
intron-3CDS	ENST00000575411	ENST00000324460		ChiTaRS3.1			AI191499	CYB5D2	chr17	4060827	-	HSPA5	chr9	128000443	+
5CDS-intron	ENST00000284509	ENST00000568609		ChiTaRS3.1			AK058147	ATP8B4	chr15	50168475	-	PWRN1	chr15	24778839	+
5CDS-intron	ENST00000559829	ENST00000568609		ChiTaRS3.1			AK058147	ATP8B4	chr15	50168475	-	PWRN1	chr15	24778839	+
intron-intron	ENST00000558959	ENST00000568609		ChiTaRS3.1			AK058147	ATP8B4	chr15	50168475	-	PWRN1	chr15	24778839	+
In-frame	ENST00000360184	ENST00000338252		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000508830		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000359176		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000395812		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000325674		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000395813		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000510756		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000508608		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000341926		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000511049		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000309190		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000509903		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000511782		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
In-frame	ENST00000360184	ENST00000504465		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
5CDS-3UTR	ENST00000360184	ENST00000348386		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
5CDS-3UTR	ENST00000360184	ENST00000508579		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
5CDS-3UTR	ENST00000360184	ENST00000515663		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000338252		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000508830		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000359176		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000395812		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000325674		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000395813		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000510756		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000508608		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000341926		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000511049		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000309190		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000509903		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000511782		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000556791	ENST00000504465		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3UTR	ENST00000556791	ENST00000348386		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3UTR	ENST00000556791	ENST00000508579		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3UTR	ENST00000556791	ENST00000515663		ChiTaRS3.1			DW419036	DYNC1H1	chr14	102466438	+	CAST	chr5	96086345	+
intron-3CDS	ENST00000520113	ENST00000415708		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000520113	ENST00000428395		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000520113	ENST00000241502		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000520113	ENST00000424384		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-intron	ENST00000520113	ENST00000492360		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-3CDS	ENST00000369538	ENST00000415708		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000369538	ENST00000428395		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000369538	ENST00000241502		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000369538	ENST00000424384		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-intron	ENST00000369538	ENST00000492360		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-3CDS	ENST00000353928	ENST00000415708		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000353928	ENST00000428395		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000353928	ENST00000241502		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-5UTR	ENST00000353928	ENST00000424384		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
intron-intron	ENST00000353928	ENST00000492360		ChiTaRS3.1			BX647833	AMPD1	chr1	115226831	-	FYTTD1	chr3	197483395	+
5CDS-3UTR	ENST00000545951	ENST00000268989		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000545951	ENST00000426855		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-intron	ENST00000545951	ENST00000574563		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000382839	ENST00000268989		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000382839	ENST00000426855		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-intron	ENST00000382839	ENST00000574563		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000324666	ENST00000268989		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000324666	ENST00000426855		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-intron	ENST00000324666	ENST00000574563		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000502458	ENST00000268989		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000502458	ENST00000426855		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-intron	ENST00000502458	ENST00000574563		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000505311	ENST00000268989		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-3UTR	ENST00000505311	ENST00000426855		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
5CDS-intron	ENST00000505311	ENST00000574563		ChiTaRS3.1			CV571420	FAM193A	chr4	2661770	+	SGSM2	chr17	2282907	+
Frame-shit	ENST00000375807	ENST00000521662		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
Frame-shit	ENST00000375807	ENST00000521688		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000375807	ENST00000520147		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000375807	ENST00000522407		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
In-frame	ENST00000339901	ENST00000521662		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
Frame-shit	ENST00000339901	ENST00000521688		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000339901	ENST00000520147		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5CDS-3UTR	ENST00000339901	ENST00000522407		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5UTR-3CDS	ENST00000534113	ENST00000521662		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5UTR-3CDS	ENST00000534113	ENST00000521688		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5UTR-3UTR	ENST00000534113	ENST00000520147		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
5UTR-3UTR	ENST00000534113	ENST00000522407		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
intron-3CDS	ENST00000470305	ENST00000521662		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
intron-3CDS	ENST00000470305	ENST00000521688		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
intron-3UTR	ENST00000470305	ENST00000520147		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
intron-3UTR	ENST00000470305	ENST00000522407		ChiTaRS3.1			DB133597	SECISBP2	chr9	91934712	+	ENY2	chr8	110355634	+
intron-intron	ENST00000367142	ENST00000535572		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000537687		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000315939		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000447667		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000530271		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000540360		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000340908		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000574564		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000535572		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000537687		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000315939		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000447667		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000530271		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000540360		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000340908		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000574564		ChiTaRS3.1			AI825705	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
5UTR-intron	ENST00000447110	ENST00000582674		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000447110	ENST00000328381		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000447110	ENST00000443677		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000447110	ENST00000324689		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000447110	ENST00000535306		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000581552	ENST00000582674		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000581552	ENST00000328381		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000581552	ENST00000443677		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000581552	ENST00000324689		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000581552	ENST00000535306		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000584803	ENST00000582674		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000584803	ENST00000328381		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000584803	ENST00000443677		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000584803	ENST00000324689		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
intron-intron	ENST00000584803	ENST00000535306		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000583222	ENST00000582674		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000583222	ENST00000328381		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000583222	ENST00000443677		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000583222	ENST00000324689		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
5UTR-intron	ENST00000583222	ENST00000535306		ChiTaRS3.1			CT002985	PIK3R5	chr17	8868910	-	RNF135	chr17	29311633	+
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			AF113911	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			AF113911	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000398512	ENST00000318560		ChiTaRS3.1			AF113911	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			AF113911	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
3UTR-intron	ENST00000451311	ENST00000375541		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000451311	ENST00000467938		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000380636	ENST00000375541		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000380636	ENST00000467938		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000380635	ENST00000375541		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000380635	ENST00000467938		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000380633	ENST00000375541		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
3UTR-intron	ENST00000380633	ENST00000467938		ChiTaRS3.1			BF029317	TMSB4X	chrX	12995180	+	CROCC	chr1	17097894	+
intron-3CDS	ENST00000477333	ENST00000301187		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
intron-3CDS	ENST00000477333	ENST00000416963		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
intron-3CDS	ENST00000477333	ENST00000376591		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
intron-intron	ENST00000477333	ENST00000476013		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
Frame-shit	ENST00000539231	ENST00000301187		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
Frame-shit	ENST00000539231	ENST00000416963		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
Frame-shit	ENST00000539231	ENST00000376591		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
5CDS-intron	ENST00000539231	ENST00000476013		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
In-frame	ENST00000377687	ENST00000301187		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
Frame-shit	ENST00000377687	ENST00000416963		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
Frame-shit	ENST00000377687	ENST00000376591		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
5CDS-intron	ENST00000377687	ENST00000476013		ChiTaRS3.1			CN418033	KLF5	chr13	73649913	+	TMC4	chr19	54664070	-
intron-3CDS	ENST00000294507	ENST00000296721		ChiTaRS3.1			AK303314	LAPTM5	chr1	31208049	-	AFAP1L1	chr5	148691717	+
intron-intron	ENST00000294507	ENST00000522492		ChiTaRS3.1			AK303314	LAPTM5	chr1	31208049	-	AFAP1L1	chr5	148691717	+
intron-intron	ENST00000294507	ENST00000515000		ChiTaRS3.1			AK303314	LAPTM5	chr1	31208049	-	AFAP1L1	chr5	148691717	+
intron-3CDS	ENST00000476492	ENST00000296721		ChiTaRS3.1			AK303314	LAPTM5	chr1	31208049	-	AFAP1L1	chr5	148691717	+
intron-intron	ENST00000476492	ENST00000522492		ChiTaRS3.1			AK303314	LAPTM5	chr1	31208049	-	AFAP1L1	chr5	148691717	+
intron-intron	ENST00000476492	ENST00000515000		ChiTaRS3.1			AK303314	LAPTM5	chr1	31208049	-	AFAP1L1	chr5	148691717	+
intron-3CDS	ENST00000408742	ENST00000407106		ChiTaRS3.1			BU856741	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000261755		ChiTaRS3.1			BU856741	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000561421		ChiTaRS3.1			BU856741	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3CDS	ENST00000408742	ENST00000539156		ChiTaRS3.1			BU856741	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
intron-3UTR	ENST00000408742	ENST00000558627		ChiTaRS3.1			BU856741	MIR548N	chr2	179315154	-	FAH	chr15	80460620	+
5CDS-intron	ENST00000261991	ENST00000553400		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-intron	ENST00000261991	ENST00000330836		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000261991	ENST00000544005		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000261991	ENST00000555054		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000536315	ENST00000553400		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000536315	ENST00000330836		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000536315	ENST00000544005		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000536315	ENST00000555054		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-intron	ENST00000418736	ENST00000553400		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-intron	ENST00000418736	ENST00000330836		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000418736	ENST00000544005		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
5CDS-5UTR	ENST00000418736	ENST00000555054		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000556304	ENST00000553400		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-intron	ENST00000556304	ENST00000330836		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000556304	ENST00000544005		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-5UTR	ENST00000556304	ENST00000555054		ChiTaRS3.1			BQ063739	RPS6KA5	chr14	91526675	-	DDX24	chr14	94528968	-
intron-3CDS	ENST00000229238	ENST00000262554		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-5UTR	ENST00000229238	ENST00000482632		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-intron	ENST00000229238	ENST00000337841		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-3CDS	ENST00000543164	ENST00000262554		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-5UTR	ENST00000543164	ENST00000482632		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-intron	ENST00000543164	ENST00000337841		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-3CDS	ENST00000543703	ENST00000262554		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-5UTR	ENST00000543703	ENST00000482632		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-intron	ENST00000543703	ENST00000337841		ChiTaRS3.1			AK309775	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
5UTR-3CDS	ENST00000221214	ENST00000258301		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-intron	ENST00000221214	ENST00000469135		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-5UTR	ENST00000221214	ENST00000542060		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-3CDS	ENST00000457542	ENST00000258301		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-intron	ENST00000457542	ENST00000469135		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-5UTR	ENST00000457542	ENST00000542060		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-3CDS	ENST00000260357	ENST00000258301		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-intron	ENST00000260357	ENST00000469135		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-5UTR	ENST00000260357	ENST00000542060		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-3CDS	ENST00000456763	ENST00000258301		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-intron	ENST00000456763	ENST00000469135		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-5UTR	ENST00000456763	ENST00000542060		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-3CDS	ENST00000514566	ENST00000258301		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-intron	ENST00000514566	ENST00000469135		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
5UTR-5UTR	ENST00000514566	ENST00000542060		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
intron-3CDS	ENST00000507762	ENST00000258301		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
intron-intron	ENST00000507762	ENST00000469135		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
intron-5UTR	ENST00000507762	ENST00000542060		ChiTaRS3.1			DA324569	MAPKBP1	chr15	42066809	+	STX6	chr1	180962562	-
intron-intron	ENST00000327283	ENST00000330978		ChiTaRS3.1			BU580997	PTPN2	chr18	12859223	-	BOLA2	chr16	30002608	+
intron-intron	ENST00000591115	ENST00000330978		ChiTaRS3.1			BU580997	PTPN2	chr18	12859223	-	BOLA2	chr16	30002608	+
intron-intron	ENST00000353319	ENST00000330978		ChiTaRS3.1			BU580997	PTPN2	chr18	12859223	-	BOLA2	chr16	30002608	+
intron-intron	ENST00000309660	ENST00000330978		ChiTaRS3.1			BU580997	PTPN2	chr18	12859223	-	BOLA2	chr16	30002608	+
intron-intron	ENST00000589086	ENST00000330978		ChiTaRS3.1			BU580997	PTPN2	chr18	12859223	-	BOLA2	chr16	30002608	+
intron-intron	ENST00000591497	ENST00000330978		ChiTaRS3.1			BU580997	PTPN2	chr18	12859223	-	BOLA2	chr16	30002608	+
intron-3CDS	ENST00000266058	ENST00000328090		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-intron	ENST00000266058	ENST00000463468		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-3CDS	ENST00000371070	ENST00000328090		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-intron	ENST00000371070	ENST00000463468		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-3CDS	ENST00000371041	ENST00000328090		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-intron	ENST00000371041	ENST00000463468		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-3CDS	ENST00000456008	ENST00000328090		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-intron	ENST00000456008	ENST00000463468		ChiTaRS3.1			BM676949	SLIT1	chr10	98758125	+	FAM208B	chr10	5789898	-
intron-intron	ENST00000273077	ENST00000390168		ChiTaRS3.1			DA440605	PNKD	chr2	219146712	-	H19	chr11	2018908	-
intron-intron	ENST00000472650	ENST00000390168		ChiTaRS3.1			DA440605	PNKD	chr2	219146712	-	H19	chr11	2018908	-
intron-intron	ENST00000248451	ENST00000390168		ChiTaRS3.1			DA440605	PNKD	chr2	219146712	-	H19	chr11	2018908	-
intron-intron	ENST00000258362	ENST00000390168		ChiTaRS3.1			DA440605	PNKD	chr2	219146712	-	H19	chr11	2018908	-
intron-intron	ENST00000436005	ENST00000390168		ChiTaRS3.1			DA440605	PNKD	chr2	219146712	-	H19	chr11	2018908	-
intron-5UTR	ENST00000261866	ENST00000249842		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000261866	ENST00000395118		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000535302	ENST00000249842		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000535302	ENST00000395118		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000427534	ENST00000249842		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000427534	ENST00000395118		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000558319	ENST00000249842		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000558319	ENST00000395118		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000558253	ENST00000249842		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000558253	ENST00000395118		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-5UTR	ENST00000559193	ENST00000249842		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-intron	ENST00000559193	ENST00000395118		ChiTaRS3.1			DA646336	SPG11	chr15	44951461	-	ISLR	chr15	74466176	+
intron-3UTR	ENST00000421307	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000421307	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000354379	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000354379	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000336686	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000336686	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000421276	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000421276	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000396428	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000396428	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000440230	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000440230	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000490597	ENST00000331595		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
intron-3UTR	ENST00000490597	ENST00000480756		ChiTaRS3.1			ES309565	LRRFIP2	chr3	37190498	-	BGN	chrX	152774210	+
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BC070490	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			X06418	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			X06418	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
In-frame	ENST00000398512	ENST00000318560		ChiTaRS3.1			X06418	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			X06418	BCR	chr22	23524426	+	ABL1	chr9	133729448	+
intron-intron	ENST00000356495	ENST00000369911		ChiTaRS3.1			BG981391	PIGR	chr1	207110597	-	DNAJC5	chr20	62566666	+
intron-3UTR	ENST00000356495	ENST00000360864		ChiTaRS3.1			BG981391	PIGR	chr1	207110597	-	DNAJC5	chr20	62566666	+
intron-intron	ENST00000487208	ENST00000369911		ChiTaRS3.1			BG981391	PIGR	chr1	207110597	-	DNAJC5	chr20	62566666	+
intron-3UTR	ENST00000487208	ENST00000360864		ChiTaRS3.1			BG981391	PIGR	chr1	207110597	-	DNAJC5	chr20	62566666	+
5CDS-3UTR	ENST00000306726	ENST00000368865		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000538238		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368859		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368858		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000481952		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000564970	ENST00000368865		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000538238		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368859		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368858		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000481952		ChiTaRS3.1			BG186971	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
3UTR-3CDS	ENST00000527001	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
3UTR-intron	ENST00000527001	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
3UTR-intron	ENST00000527001	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
3UTR-intron	ENST00000527001	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-3CDS	ENST00000257831	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-intron	ENST00000257831	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-intron	ENST00000257831	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-intron	ENST00000257831	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-3CDS	ENST00000450654	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-intron	ENST00000450654	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-intron	ENST00000450654	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
5UTR-intron	ENST00000450654	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-3CDS	ENST00000530286	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000530286	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000530286	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000530286	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-3CDS	ENST00000533754	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000533754	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000533754	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000533754	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-3CDS	ENST00000531728	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000531728	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000531728	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000531728	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-3CDS	ENST00000531794	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000531794	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000531794	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000531794	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-3CDS	ENST00000527935	ENST00000380191		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000527935	ENST00000479928		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000527935	ENST00000380132		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
intron-intron	ENST00000527935	ENST00000380181		ChiTaRS3.1			DA040259	EHF	chr11	34642776	+	GDI2	chr10	5842670	-
Frame-shit	ENST00000356524	ENST00000367990		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-intron	ENST00000356524	ENST00000468465		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000356524	ENST00000463812		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000356524	ENST00000470459		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000356524	ENST00000464492		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-intron	ENST00000356524	ENST00000491350		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
Frame-shit	ENST00000532858	ENST00000367990		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-intron	ENST00000532858	ENST00000468465		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000532858	ENST00000463812		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000532858	ENST00000470459		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000532858	ENST00000464492		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-intron	ENST00000532858	ENST00000491350		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
Frame-shit	ENST00000405158	ENST00000367990		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-intron	ENST00000405158	ENST00000468465		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000405158	ENST00000463812		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000405158	ENST00000470459		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-5UTR	ENST00000405158	ENST00000464492		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
5CDS-intron	ENST00000405158	ENST00000491350		ChiTaRS3.1			BG562889	SAA1	chr11	18290879	+	APOA2	chr1	161192799	-
intron-3CDS	ENST00000307378	ENST00000225992		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000307378	ENST00000591228		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000307378	ENST00000587006		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000537524	ENST00000225992		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000537524	ENST00000591228		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000537524	ENST00000587006		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000473830	ENST00000225992		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000473830	ENST00000591228		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000473830	ENST00000587006		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000452078	ENST00000225992		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000452078	ENST00000591228		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000452078	ENST00000587006		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000458504	ENST00000225992		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000458504	ENST00000591228		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000458504	ENST00000587006		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000390670	ENST00000225992		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000390670	ENST00000591228		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-3CDS	ENST00000390670	ENST00000587006		ChiTaRS3.1			BP386860	SLCO1A2	chr12	21532366	-	PPY	chr17	42018901	-
intron-intron	ENST00000396402	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000396402	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000396402	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000396402	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000260433	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000260433	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000260433	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000260433	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000396404	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000396404	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000396404	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000396404	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000559878	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000559878	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000559878	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000559878	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000405913	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000405913	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000405913	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000405913	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000557858	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000557858	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000557858	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000557858	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000492852	ENST00000546373		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000492852	ENST00000551568		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-3UTR	ENST00000492852	ENST00000338356		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
intron-intron	ENST00000492852	ENST00000549691		ChiTaRS3.1			BQ367522	CYP19A1	chr15	51502951	-	CPM	chr12	69246286	-
5UTR-3CDS	ENST00000341084	ENST00000522695		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-3CDS	ENST00000341084	ENST00000524300		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000523558		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000521210		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000355780		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000519961		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000521727		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000521451		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000522509		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-5UTR	ENST00000341084	ENST00000517542		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-intron	ENST00000341084	ENST00000524104		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-intron	ENST00000341084	ENST00000522962		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5UTR-intron	ENST00000341084	ENST00000521419		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-3CDS	ENST00000519449	ENST00000522695		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-3CDS	ENST00000519449	ENST00000524300		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000523558		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000521210		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000355780		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000519961		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000521727		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000521451		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000522509		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000519449	ENST00000517542		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-intron	ENST00000519449	ENST00000524104		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-intron	ENST00000519449	ENST00000522962		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-intron	ENST00000519449	ENST00000521419		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-3CDS	ENST00000523255	ENST00000522695		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-3CDS	ENST00000523255	ENST00000524300		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000523558		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000521210		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000355780		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000519961		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000521727		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000521451		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000522509		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-5UTR	ENST00000523255	ENST00000517542		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-intron	ENST00000523255	ENST00000524104		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-intron	ENST00000523255	ENST00000522962		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
intron-intron	ENST00000523255	ENST00000521419		ChiTaRS3.1			DA201993	RNF19A	chr8	101322092	-	STAU2	chr8	74529688	-
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM745157	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
3UTR-intron	ENST00000246896	ENST00000264170		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
3UTR-intron	ENST00000246896	ENST00000375773		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
3UTR-intron	ENST00000246896	ENST00000409512		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
3UTR-intron	ENST00000246896	ENST00000410015		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
intron-intron	ENST00000511674	ENST00000264170		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
intron-intron	ENST00000511674	ENST00000375773		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
intron-intron	ENST00000511674	ENST00000409512		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
intron-intron	ENST00000511674	ENST00000410015		ChiTaRS3.1			BP333200	HTN1	chr4	70924377	+	KYNU	chr2	143795116	+
intron-3UTR	ENST00000267085	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000267085	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000267085	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000267085	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379843	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379843	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379843	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379843	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379846	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379846	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379846	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000379846	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000444623	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000444623	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000444623	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000444623	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000453446	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000453446	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000453446	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000453446	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000542115	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000542115	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000542115	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000542115	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000491654	ENST00000378670		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000491654	ENST00000378667		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000491654	ENST00000496429		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-3UTR	ENST00000491654	ENST00000378665		ChiTaRS3.1			BC053557	CSAD	chr12	53582457	+	UQCRQ	chr5	132203325	+
intron-intron	ENST00000400198	ENST00000542979		ChiTaRS3.1			BE930315	ARGLU1	chr13	107209459	-	NAPG	chr18	10530801	+
intron-intron	ENST00000400198	ENST00000322897		ChiTaRS3.1			BE930315	ARGLU1	chr13	107209459	-	NAPG	chr18	10530801	+
intron-intron	ENST00000472226	ENST00000542979		ChiTaRS3.1			BE930315	ARGLU1	chr13	107209459	-	NAPG	chr18	10530801	+
intron-intron	ENST00000472226	ENST00000322897		ChiTaRS3.1			BE930315	ARGLU1	chr13	107209459	-	NAPG	chr18	10530801	+
intron-intron	ENST00000375926	ENST00000542979		ChiTaRS3.1			BE930315	ARGLU1	chr13	107209459	-	NAPG	chr18	10530801	+
intron-intron	ENST00000375926	ENST00000322897		ChiTaRS3.1			BE930315	ARGLU1	chr13	107209459	-	NAPG	chr18	10530801	+
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM741420	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
3UTR-3CDS	ENST00000397661	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-intron	ENST00000397661	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-intron	ENST00000397661	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-3CDS	ENST00000592199	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000592199	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000592199	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-3CDS	ENST00000587760	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000587760	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000587760	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-3CDS	ENST00000585575	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000585575	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000585575	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-3CDS	ENST00000360105	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-intron	ENST00000360105	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-intron	ENST00000360105	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-3CDS	ENST00000588228	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000588228	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000588228	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-3CDS	ENST00000587260	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000587260	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000587260	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-3CDS	ENST00000358552	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-intron	ENST00000358552	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
3UTR-intron	ENST00000358552	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-3CDS	ENST00000588680	ENST00000347869		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000588680	ENST00000469838		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000588680	ENST00000441812		ChiTaRS3.1			DB028954	NFIX	chr19	13206543	+	RBM5	chr3	50141679	+
intron-intron	ENST00000379251	ENST00000415807		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-3UTR	ENST00000379251	ENST00000336824		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379251	ENST00000416957		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379251	ENST00000392699		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379251	ENST00000421757		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379251	ENST00000423424		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379251	ENST00000476794		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379253	ENST00000415807		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-3UTR	ENST00000379253	ENST00000336824		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379253	ENST00000416957		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379253	ENST00000392699		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379253	ENST00000421757		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379253	ENST00000423424		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000379253	ENST00000476794		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379254	ENST00000415807		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-3UTR	ENST00000379254	ENST00000336824		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379254	ENST00000416957		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379254	ENST00000392699		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379254	ENST00000421757		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379254	ENST00000423424		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379254	ENST00000476794		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379270	ENST00000415807		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-3UTR	ENST00000379270	ENST00000336824		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379270	ENST00000416957		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379270	ENST00000392699		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379270	ENST00000421757		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379270	ENST00000423424		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000379270	ENST00000476794		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000489394	ENST00000415807		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-3UTR	ENST00000489394	ENST00000336824		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000489394	ENST00000416957		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000489394	ENST00000392699		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000489394	ENST00000421757		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000489394	ENST00000423424		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
3UTR-intron	ENST00000489394	ENST00000476794		ChiTaRS3.1			BQ023122	SAT1	chrX	23804087	-	FNDC3B	chr3	172117705	-
intron-intron	ENST00000518270	ENST00000415708		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-3UTR	ENST00000518270	ENST00000428395		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-3UTR	ENST00000518270	ENST00000241502		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-intron	ENST00000518270	ENST00000424384		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-intron	ENST00000518270	ENST00000492360		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000520817	ENST00000415708		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-3UTR	ENST00000520817	ENST00000428395		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-3UTR	ENST00000520817	ENST00000241502		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000520817	ENST00000424384		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000520817	ENST00000492360		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000405786	ENST00000415708		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-3UTR	ENST00000405786	ENST00000428395		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-3UTR	ENST00000405786	ENST00000241502		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000405786	ENST00000424384		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000405786	ENST00000492360		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000357743	ENST00000415708		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-3UTR	ENST00000357743	ENST00000428395		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-3UTR	ENST00000357743	ENST00000241502		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000357743	ENST00000424384		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
3UTR-intron	ENST00000357743	ENST00000492360		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-intron	ENST00000521417	ENST00000415708		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-3UTR	ENST00000521417	ENST00000428395		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-3UTR	ENST00000521417	ENST00000241502		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-intron	ENST00000521417	ENST00000424384		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-intron	ENST00000521417	ENST00000492360		ChiTaRS3.1			BQ308595	GOLGA7	chr8	41367975	+	FYTTD1	chr3	197509858	+
intron-3CDS	ENST00000379251	ENST00000414242		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-3CDS	ENST00000379251	ENST00000361479		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-intron	ENST00000379251	ENST00000496525		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-3CDS	ENST00000379253	ENST00000414242		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-3CDS	ENST00000379253	ENST00000361479		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
intron-intron	ENST00000379253	ENST00000496525		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
Frame-shit	ENST00000379254	ENST00000414242		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
Frame-shit	ENST00000379254	ENST00000361479		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
5CDS-intron	ENST00000379254	ENST00000496525		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
In-frame	ENST00000379270	ENST00000414242		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
In-frame	ENST00000379270	ENST00000361479		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
5CDS-intron	ENST00000379270	ENST00000496525		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-3CDS	ENST00000489394	ENST00000414242		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-3CDS	ENST00000489394	ENST00000361479		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
3UTR-intron	ENST00000489394	ENST00000496525		ChiTaRS3.1			BM263362	SAT1	chrX	23803938	-	MPHOSPH8	chr13	20224305	-
Frame-shit	ENST00000265843	ENST00000371657		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000396059		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000371674		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000371677		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000340309		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000420027		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000265843	ENST00000415862		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000443411	ENST00000371657		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000396059		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000371674		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000371677		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000340309		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000420027		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000443411	ENST00000415862		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000428840	ENST00000371657		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000396059		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000371674		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000371677		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000340309		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000420027		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000428840	ENST00000415862		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
Frame-shit	ENST00000525344	ENST00000371657		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000396059		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000371674		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000371677		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000340309		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000420027		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
5CDS-intron	ENST00000525344	ENST00000415862		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-3CDS	ENST00000524840	ENST00000371657		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000396059		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000371674		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000371677		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000340309		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000420027		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000524840	ENST00000415862		ChiTaRS3.1			CF995065	EXPH5	chr11	108464144	-	UBE2V1	chr20	48713359	-
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582373	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000558134	ENST00000371191		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000407417		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000479364		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000371189		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000403491		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000371187		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000485903		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000371185		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000371184		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000558134	ENST00000357977		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000371191		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000407417		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000479364		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000371189		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000403491		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000371187		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000485903		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000371185		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000371184		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000560266	ENST00000357977		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000371191		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000407417		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000479364		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000371189		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000403491		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000371187		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000485903		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000371185		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000371184		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000268220	ENST00000357977		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000371191		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000407417		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000479364		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000371189		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000403491		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000371187		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000485903		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000371185		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000371184		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
intron-intron	ENST00000455959	ENST00000357977		ChiTaRS3.1			AI954648	SEC11A	chr15	85224745	-	NFIA	chr1	61724519	-
3UTR-3CDS	ENST00000569256	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000569256	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000569256	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000569256	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000569256	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000248098	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000248098	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000248098	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000248098	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000248098	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000562684	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000562684	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000562684	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000562684	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000562684	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000561516	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-3CDS	ENST00000561516	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000561516	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000561516	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
3UTR-intron	ENST00000561516	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3CDS	ENST00000382711	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3CDS	ENST00000382711	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000382711	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000382711	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000382711	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3CDS	ENST00000569765	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3CDS	ENST00000569765	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000569765	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000569765	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000569765	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3CDS	ENST00000382710	ENST00000533603		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3CDS	ENST00000382710	ENST00000358171		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000382710	ENST00000530284		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000382710	ENST00000524558		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-intron	ENST00000382710	ENST00000525876		ChiTaRS3.1			BI044399	HN1L	chr16	1749315	+	SERPINH1	chr11	75282935	+
intron-3UTR	ENST00000494674	ENST00000369002		ChiTaRS3.1			BQ332983	PRPF4B	chr6	4062947	+	SEC63	chr6	108192901	-
intron-intron	ENST00000494674	ENST00000460009		ChiTaRS3.1			BQ332983	PRPF4B	chr6	4062947	+	SEC63	chr6	108192901	-
intron-3UTR	ENST00000337659	ENST00000369002		ChiTaRS3.1			BQ332983	PRPF4B	chr6	4062947	+	SEC63	chr6	108192901	-
intron-intron	ENST00000337659	ENST00000460009		ChiTaRS3.1			BQ332983	PRPF4B	chr6	4062947	+	SEC63	chr6	108192901	-
intron-3UTR	ENST00000538861	ENST00000369002		ChiTaRS3.1			BQ332983	PRPF4B	chr6	4062947	+	SEC63	chr6	108192901	-
intron-intron	ENST00000538861	ENST00000460009		ChiTaRS3.1			BQ332983	PRPF4B	chr6	4062947	+	SEC63	chr6	108192901	-
5CDS-intron	ENST00000314761	ENST00000382968		ChiTaRS3.1			CB157092	WDR75	chr2	190306305	+	RNF212	chr4	1052181	-
5CDS-intron	ENST00000314761	ENST00000433731		ChiTaRS3.1			CB157092	WDR75	chr2	190306305	+	RNF212	chr4	1052181	-
5CDS-intron	ENST00000314761	ENST00000333673		ChiTaRS3.1			CB157092	WDR75	chr2	190306305	+	RNF212	chr4	1052181	-
5CDS-intron	ENST00000314761	ENST00000505730		ChiTaRS3.1			CB157092	WDR75	chr2	190306305	+	RNF212	chr4	1052181	-
3UTR-intron	ENST00000295598	ENST00000275034		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000295598	ENST00000479165		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000537345	ENST00000275034		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000537345	ENST00000479165		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000369496	ENST00000275034		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000369496	ENST00000479165		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
intron-intron	ENST00000491156	ENST00000275034		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
intron-intron	ENST00000491156	ENST00000479165		ChiTaRS3.1			X04297	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
In-frame	ENST00000226299	ENST00000440909		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000448921		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000437397		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000355814		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000393087		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000393088		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000404814		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000226299	ENST00000449399		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
Frame-shit	ENST00000226299	ENST00000402629		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
5CDS-intron	ENST00000226299	ENST00000555289		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000440909		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000448921		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000437397		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000355814		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000393087		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000393088		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000404814		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
In-frame	ENST00000606142	ENST00000449399		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
Frame-shit	ENST00000606142	ENST00000402629		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
5CDS-intron	ENST00000606142	ENST00000555289		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000440909		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000448921		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000437397		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000355814		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000393087		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000393088		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000404814		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000449399		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3CDS	ENST00000503467	ENST00000402629		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-intron	ENST00000503467	ENST00000555289		ChiTaRS3.1			BG566103	LAP3	chr4	17585220	+	SERPINA1	chr14	94845846	-
intron-3UTR	ENST00000481646	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000481646	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000481646	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000469044	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000469044	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000469044	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000491704	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000491704	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000491704	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
3UTR-3UTR	ENST00000358441	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
3UTR-3UTR	ENST00000358441	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
3UTR-3UTR	ENST00000358441	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000489213	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000489213	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000489213	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000461822	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000461822	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000461822	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000485396	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000485396	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000485396	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
3UTR-3UTR	ENST00000471453	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
3UTR-3UTR	ENST00000471453	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
3UTR-3UTR	ENST00000471453	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000470821	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000470821	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000470821	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000393058	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000393058	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000393058	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000538260	ENST00000325558		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000538260	ENST00000543125		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
intron-3UTR	ENST00000538260	ENST00000538258		ChiTaRS3.1			AK098500	ARMC8	chr3	137965314	+	PGA3	chr11	60980265	+
Frame-shit	ENST00000302418	ENST00000355710		ChiTaRS3.1			HW088352	KIF5B	chr10	32306071	-	RET	chr10	43607546	+
Frame-shit	ENST00000302418	ENST00000340058		ChiTaRS3.1			HW088352	KIF5B	chr10	32306071	-	RET	chr10	43607546	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			HW088352	KIF5B	chr10	32306071	-	RET	chr10	43607546	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			HW088352	KIF5B	chr10	32306071	-	RET	chr10	43607546	+
In-frame	ENST00000440768	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000440768	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000440768	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000440768	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000359197	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000359197	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000359197	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000359197	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000343574	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000343574	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000343574	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000343574	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000331340	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000331340	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000331340	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000331340	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000349824	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000349824	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000349824	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000349824	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000357364	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000357364	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000357364	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000357364	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000346667	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000346667	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000346667	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000346667	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000438033	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000438033	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000438033	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000438033	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000439701	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000439701	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000439701	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000439701	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000413698	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
In-frame	ENST00000413698	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000413698	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
5CDS-intron	ENST00000413698	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
3UTR-3CDS	ENST00000492782	ENST00000558401		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
3UTR-3CDS	ENST00000492782	ENST00000559916		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
3UTR-3CDS	ENST00000492782	ENST00000544417		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
3UTR-intron	ENST00000492782	ENST00000559220		ChiTaRS3.1			AW405039	IKZF1	chr7	50367356	+	B2M	chr15	45007620	+
Frame-shit	ENST00000326427	ENST00000377424		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000326427	ENST00000536305		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000326427	ENST00000535586		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
5CDS-intron	ENST00000326427	ENST00000377414		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000335005	ENST00000377424		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000335005	ENST00000536305		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000335005	ENST00000535586		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
5CDS-intron	ENST00000335005	ENST00000377414		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000326407	ENST00000377424		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000326407	ENST00000536305		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000326407	ENST00000535586		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
5CDS-intron	ENST00000326407	ENST00000377414		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000409704	ENST00000377424		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000409704	ENST00000536305		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
Frame-shit	ENST00000409704	ENST00000535586		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
5CDS-intron	ENST00000409704	ENST00000377414		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
3UTR-3CDS	ENST00000492029	ENST00000377424		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
3UTR-3CDS	ENST00000492029	ENST00000536305		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
3UTR-3CDS	ENST00000492029	ENST00000535586		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
3UTR-intron	ENST00000492029	ENST00000377414		ChiTaRS3.1			BP264264	ITM2C	chr2	231740437	+	SLC2A5	chr1	9097764	-
5CDS-3UTR	ENST00000299238	ENST00000355957		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000361770		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000359617		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000371141		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000371132		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-intron	ENST00000299238	ENST00000496003		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000358029		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
5CDS-3UTR	ENST00000299238	ENST00000361830		ChiTaRS3.1			AW290881	HPS6	chr10	103825750	+	STX16	chr20	57251520	+
3UTR-5UTR	ENST00000534336	ENST00000299427		ChiTaRS3.1			DA868262	MALAT1	chr11	65266714	+	TPP1	chr11	6640660	-
3UTR-intron	ENST00000534336	ENST00000533371		ChiTaRS3.1			DA868262	MALAT1	chr11	65266714	+	TPP1	chr11	6640660	-
3UTR-intron	ENST00000534336	ENST00000534644		ChiTaRS3.1			DA868262	MALAT1	chr11	65266714	+	TPP1	chr11	6640660	-
3UTR-intron	ENST00000534336	ENST00000528657		ChiTaRS3.1			DA868262	MALAT1	chr11	65266714	+	TPP1	chr11	6640660	-
5CDS-intron	ENST00000570308	ENST00000395395		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000340911		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000481550		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000480716		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000570308	ENST00000375354		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000395395		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000340911		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000481550		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000480716		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000219070	ENST00000375354		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000395395		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000340911		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000481550		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000480716		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000543485	ENST00000375354		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000395395		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000340911		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000481550		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000480716		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
5CDS-intron	ENST00000437642	ENST00000375354		ChiTaRS3.1			R55391	MMP2	chr16	55519302	+	ZNF169	chr9	97064740	+
3UTR-3UTR	ENST00000250151	ENST00000257181		ChiTaRS3.1			CD641082	CCL4	chr17	34432864	+	PRPF38A	chr1	52882577	+
3UTR-3UTR	ENST00000250151	ENST00000474048		ChiTaRS3.1			CD641082	CCL4	chr17	34432864	+	PRPF38A	chr1	52882577	+
3UTR-3UTR	ENST00000394495	ENST00000257181		ChiTaRS3.1			CD641082	CCL4	chr17	34432864	+	PRPF38A	chr1	52882577	+
3UTR-3UTR	ENST00000394495	ENST00000474048		ChiTaRS3.1			CD641082	CCL4	chr17	34432864	+	PRPF38A	chr1	52882577	+
3UTR-3UTR	ENST00000540746	ENST00000220597		ChiTaRS3.1			BM722211	LSM14A	chr19	34718853	+	PAG1	chr8	81885191	-
3UTR-intron	ENST00000540746	ENST00000523463		ChiTaRS3.1			BM722211	LSM14A	chr19	34718853	+	PAG1	chr8	81885191	-
3UTR-3UTR	ENST00000544216	ENST00000220597		ChiTaRS3.1			BM722211	LSM14A	chr19	34718853	+	PAG1	chr8	81885191	-
3UTR-intron	ENST00000544216	ENST00000523463		ChiTaRS3.1			BM722211	LSM14A	chr19	34718853	+	PAG1	chr8	81885191	-
3UTR-3UTR	ENST00000433627	ENST00000220597		ChiTaRS3.1			BM722211	LSM14A	chr19	34718853	+	PAG1	chr8	81885191	-
3UTR-intron	ENST00000433627	ENST00000523463		ChiTaRS3.1			BM722211	LSM14A	chr19	34718853	+	PAG1	chr8	81885191	-
intron-3CDS	ENST00000324460	ENST00000344034		ChiTaRS3.1			BF801833	HSPA5	chr9	127999143	-	PPM1G	chr2	27607580	-
intron-3CDS	ENST00000324460	ENST00000350803		ChiTaRS3.1			BF801833	HSPA5	chr9	127999143	-	PPM1G	chr2	27607580	-
intron-3CDS	ENST00000331483	ENST00000392415		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000331483	ENST00000410062		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000331483	ENST00000602710		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000331483	ENST00000602837		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000331483	ENST00000602959		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000331483	ENST00000602475		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000331483	ENST00000602632		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000576390	ENST00000392415		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000576390	ENST00000410062		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000576390	ENST00000602710		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000576390	ENST00000602837		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000576390	ENST00000602959		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000576390	ENST00000602475		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000576390	ENST00000602632		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000439918	ENST00000392415		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000439918	ENST00000410062		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000439918	ENST00000602710		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000439918	ENST00000602837		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000439918	ENST00000602959		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000439918	ENST00000602475		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000439918	ENST00000602632		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000472244	ENST00000392415		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000472244	ENST00000410062		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000472244	ENST00000602710		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000472244	ENST00000602837		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000472244	ENST00000602959		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000472244	ENST00000602475		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-intron	ENST00000472244	ENST00000602632		ChiTaRS3.1			BP290873	P4HB	chr17	79801408	-	UBE2E3	chr2	181846811	+
intron-3CDS	ENST00000539286	ENST00000304636		ChiTaRS3.1			BU625345	BRI3	chr7	97920614	-	COL3A1	chr2	189859046	-
intron-3CDS	ENST00000539286	ENST00000317840		ChiTaRS3.1			BU625345	BRI3	chr7	97920614	-	COL3A1	chr2	189859046	-
3UTR-3CDS	ENST00000297290	ENST00000304636		ChiTaRS3.1			BU625345	BRI3	chr7	97920614	-	COL3A1	chr2	189859046	-
3UTR-3CDS	ENST00000297290	ENST00000317840		ChiTaRS3.1			BU625345	BRI3	chr7	97920614	-	COL3A1	chr2	189859046	-
3UTR-3CDS	ENST00000473967	ENST00000304636		ChiTaRS3.1			BU625345	BRI3	chr7	97920614	-	COL3A1	chr2	189859046	-
3UTR-3CDS	ENST00000473967	ENST00000317840		ChiTaRS3.1			BU625345	BRI3	chr7	97920614	-	COL3A1	chr2	189859046	-
intron-intron	ENST00000591142	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000591142	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000591142	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-intron	ENST00000591601	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000591601	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000591601	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-intron	ENST00000309340	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000309340	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000309340	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-intron	ENST00000250896	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000250896	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000250896	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-intron	ENST00000541165	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000541165	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000541165	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-intron	ENST00000591588	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000591588	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000591588	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-intron	ENST00000588014	ENST00000403766		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000588014	ENST00000376440		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
intron-3UTR	ENST00000588014	ENST00000460562		ChiTaRS3.1			BM765288	MKNK2	chr19	2038030	-	UBAC2	chr13	100037910	+
3UTR-3UTR	ENST00000409074	ENST00000357066		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
3UTR-intron	ENST00000409074	ENST00000592143		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
3UTR-intron	ENST00000409074	ENST00000592280		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-3UTR	ENST00000556253	ENST00000357066		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-intron	ENST00000556253	ENST00000592143		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-intron	ENST00000556253	ENST00000592280		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
3UTR-3UTR	ENST00000247618	ENST00000357066		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
3UTR-intron	ENST00000247618	ENST00000592143		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
3UTR-intron	ENST00000247618	ENST00000592280		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-3UTR	ENST00000477116	ENST00000357066		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-intron	ENST00000477116	ENST00000592143		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-intron	ENST00000477116	ENST00000592280		ChiTaRS3.1			AV705905	APOPT1	chr14	104056927	+	MOB3A	chr19	2072654	-
intron-intron	ENST00000380520	ENST00000453363		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380520	ENST00000316193		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380520	ENST00000329882		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380524	ENST00000453363		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380524	ENST00000316193		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380524	ENST00000329882		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380529	ENST00000453363		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380529	ENST00000316193		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380529	ENST00000329882		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380539	ENST00000453363		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380539	ENST00000316193		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380539	ENST00000329882		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380546	ENST00000453363		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380546	ENST00000316193		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000380546	ENST00000329882		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000335686	ENST00000453363		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000335686	ENST00000316193		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
intron-intron	ENST00000335686	ENST00000329882		ChiTaRS3.1			BE929511	SERPINB6	chr6	2969017	-	CSH1	chr17	61973153	-
Frame-shit	ENST00000282058	ENST00000356462		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
Frame-shit	ENST00000282058	ENST00000400345		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-intron	ENST00000282058	ENST00000589054		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000256832		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000382850		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000256830		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-3UTR	ENST00000282058	ENST00000588516		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000456986		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000435432		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000357895		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000282058	ENST00000586263		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-intron	ENST00000282058	ENST00000456173		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-intron	ENST00000282058	ENST00000431212		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
Frame-shit	ENST00000585518	ENST00000356462		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
Frame-shit	ENST00000585518	ENST00000400345		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-intron	ENST00000585518	ENST00000589054		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000256832		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000382850		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000256830		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-3UTR	ENST00000585518	ENST00000588516		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000456986		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000435432		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000357895		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-5UTR	ENST00000585518	ENST00000586263		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-intron	ENST00000585518	ENST00000456173		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5CDS-intron	ENST00000585518	ENST00000431212		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-3CDS	ENST00000588704	ENST00000356462		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-3CDS	ENST00000588704	ENST00000400345		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-intron	ENST00000588704	ENST00000589054		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000256832		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000382850		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000256830		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-3UTR	ENST00000588704	ENST00000588516		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000456986		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000435432		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000357895		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-5UTR	ENST00000588704	ENST00000586263		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-intron	ENST00000588704	ENST00000456173		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
intron-intron	ENST00000588704	ENST00000431212		ChiTaRS3.1			AY243320	HAUS1	chr18	43685340	+	NEDD4L	chr18	55833018	+
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM771939	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM771939	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM771939	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM771939	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
In-frame	ENST00000418917	ENST00000389048		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000418917	ENST00000431873		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000418917	ENST00000498037		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
In-frame	ENST00000490574	ENST00000389048		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000490574	ENST00000431873		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000490574	ENST00000498037		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
In-frame	ENST00000240851	ENST00000389048		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000240851	ENST00000431873		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000240851	ENST00000498037		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
In-frame	ENST00000476228	ENST00000389048		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000476228	ENST00000431873		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000476228	ENST00000498037		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
intron-3CDS	ENST00000481203	ENST00000389048		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
intron-intron	ENST00000481203	ENST00000431873		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
intron-intron	ENST00000481203	ENST00000498037		ChiTaRS3.1			AF125093	TFG	chr3	100447702	+	ALK	chr2	29446395	-
intron-3CDS	ENST00000408952	ENST00000246548		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000408952	ENST00000439527		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-5UTR	ENST00000408952	ENST00000592791		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-intron	ENST00000408952	ENST00000588585		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000400809	ENST00000246548		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000400809	ENST00000439527		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-5UTR	ENST00000400809	ENST00000592791		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-intron	ENST00000400809	ENST00000588585		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000505849	ENST00000246548		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000505849	ENST00000439527		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-5UTR	ENST00000505849	ENST00000592791		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-intron	ENST00000505849	ENST00000588585		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000408918	ENST00000246548		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-3CDS	ENST00000408918	ENST00000439527		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-5UTR	ENST00000408918	ENST00000592791		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
intron-intron	ENST00000408918	ENST00000588585		ChiTaRS3.1			CD102672	CCNL2	chr1	1326194	-	UBA2	chr19	34949703	+
Frame-shit	ENST00000220913	ENST00000328759		ChiTaRS3.1			BG170848	CHRAC1	chr8	141525277	+	C19orf68	chr19	48700494	+
5CDS-intron	ENST00000220913	ENST00000593921		ChiTaRS3.1			BG170848	CHRAC1	chr8	141525277	+	C19orf68	chr19	48700494	+
3UTR-3CDS	ENST00000519533	ENST00000328759		ChiTaRS3.1			BG170848	CHRAC1	chr8	141525277	+	C19orf68	chr19	48700494	+
3UTR-intron	ENST00000519533	ENST00000593921		ChiTaRS3.1			BG170848	CHRAC1	chr8	141525277	+	C19orf68	chr19	48700494	+
intron-3UTR	ENST00000578844	ENST00000380525		ChiTaRS3.1			AI673033	MIR5095	chr20	55984329	-	CARS	chr11	3022234	+
intron-3UTR	ENST00000578844	ENST00000397111		ChiTaRS3.1			AI673033	MIR5095	chr20	55984329	-	CARS	chr11	3022234	+
intron-3UTR	ENST00000578844	ENST00000278224		ChiTaRS3.1			AI673033	MIR5095	chr20	55984329	-	CARS	chr11	3022234	+
intron-5UTR	ENST00000578844	ENST00000470221		ChiTaRS3.1			AI673033	MIR5095	chr20	55984329	-	CARS	chr11	3022234	+
intron-3UTR	ENST00000578844	ENST00000401769		ChiTaRS3.1			AI673033	MIR5095	chr20	55984329	-	CARS	chr11	3022234	+
intron-3UTR	ENST00000578844	ENST00000397114		ChiTaRS3.1			AI673033	MIR5095	chr20	55984329	-	CARS	chr11	3022234	+
3UTR-5UTR	ENST00000331569	ENST00000315366		ChiTaRS3.1			DA558581	ZNF703	chr8	37556259	+	ARSJ	chr4	114900000	-
3UTR-5UTR	ENST00000331569	ENST00000541197		ChiTaRS3.1			DA558581	ZNF703	chr8	37556259	+	ARSJ	chr4	114900000	-
3UTR-5UTR	ENST00000331569	ENST00000503013		ChiTaRS3.1			DA558581	ZNF703	chr8	37556259	+	ARSJ	chr4	114900000	-
3UTR-3CDS	ENST00000355857	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3CDS	ENST00000355857	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3UTR	ENST00000355857	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3UTR	ENST00000355857	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3UTR	ENST00000355857	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000535617	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000535617	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000535617	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000535617	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000535617	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000535757	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000535757	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000535757	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000535757	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000535757	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3CDS	ENST00000409094	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3CDS	ENST00000409094	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000409094	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000409094	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000409094	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3CDS	ENST00000311521	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3CDS	ENST00000311521	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3UTR	ENST00000311521	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3UTR	ENST00000311521	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
3UTR-3UTR	ENST00000311521	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3CDS	ENST00000460901	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3CDS	ENST00000460901	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000460901	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000460901	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000460901	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000542275	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000542275	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000542275	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000542275	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
5CDS-3UTR	ENST00000542275	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3CDS	ENST00000393103	ENST00000302182		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3CDS	ENST00000393103	ENST00000535788		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000393103	ENST00000578649		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000393103	ENST00000395839		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
intron-3UTR	ENST00000393103	ENST00000395837		ChiTaRS3.1			EL951497	DBI	chr2	120130114	+	UBB	chr17	16285804	+
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			DQ912590	BCR	chr22	23632601	+	ABL1	chr9	133747516	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			DQ912590	BCR	chr22	23632601	+	ABL1	chr9	133747516	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			DQ912590	BCR	chr22	23632601	+	ABL1	chr9	133747516	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			DQ912590	BCR	chr22	23632601	+	ABL1	chr9	133747516	+
intron-3CDS	ENST00000286091	ENST00000471646		ChiTaRS3.1			AA947407	PDIA4	chr7	148700288	+	CRHR2	chr7	30702421	+
intron-3CDS	ENST00000286091	ENST00000341843		ChiTaRS3.1			AA947407	PDIA4	chr7	148700288	+	CRHR2	chr7	30702421	+
intron-3CDS	ENST00000286091	ENST00000348438		ChiTaRS3.1			AA947407	PDIA4	chr7	148700288	+	CRHR2	chr7	30702421	+
intron-3CDS	ENST00000286091	ENST00000506074		ChiTaRS3.1			AA947407	PDIA4	chr7	148700288	+	CRHR2	chr7	30702421	+
intron-intron	ENST00000286091	ENST00000462882		ChiTaRS3.1			AA947407	PDIA4	chr7	148700288	+	CRHR2	chr7	30702421	+
intron-3UTR	ENST00000367661	ENST00000559717		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3UTR	ENST00000367661	ENST00000360468		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000367661	ENST00000431652		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000367661	ENST00000430376		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000367661	ENST00000558538		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-3UTR	ENST00000367662	ENST00000559717		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-3UTR	ENST00000367662	ENST00000360468		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000367662	ENST00000431652		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000367662	ENST00000430376		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
3UTR-intron	ENST00000367662	ENST00000558538		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3UTR	ENST00000486075	ENST00000559717		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3UTR	ENST00000486075	ENST00000360468		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000486075	ENST00000431652		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000486075	ENST00000430376		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-intron	ENST00000486075	ENST00000558538		ChiTaRS3.1			AA368457	PAPPA2	chr1	176812035	-	MAN2A2	chr15	91463843	+
intron-3CDS	ENST00000459785	ENST00000358161		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000459785	ENST00000372739		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000459785	ENST00000372731		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-intron	ENST00000459785	ENST00000475367		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000407689	ENST00000358161		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000407689	ENST00000372739		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000407689	ENST00000372731		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-intron	ENST00000407689	ENST00000475367		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000404953	ENST00000358161		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000404953	ENST00000372739		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3CDS	ENST00000404953	ENST00000372731		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-intron	ENST00000404953	ENST00000475367		ChiTaRS3.1			BM681002	GATSL3	chr22	30681181	+	SPTAN1	chr9	131388899	-
intron-3UTR	ENST00000400590	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000400590	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000320220	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000320220	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000382466	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000382466	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000542645	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000542645	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000415724	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000415724	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000422251	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000422251	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-3UTR	ENST00000494731	ENST00000376810		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
intron-intron	ENST00000494731	ENST00000376804		ChiTaRS3.1			AK074487	ZDHHC20	chr13	21987859	-	UBIAD1	chr1	11346838	+
5UTR-intron	ENST00000425013	ENST00000598188		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000425013	ENST00000359435		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000425013	ENST00000447614		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000425013	ENST00000601043		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000425013	ENST00000448635		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000425013	ENST00000595632		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000389902	ENST00000598188		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000389902	ENST00000359435		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000389902	ENST00000447614		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000389902	ENST00000601043		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000389902	ENST00000448635		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
5UTR-intron	ENST00000389902	ENST00000595632		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-intron	ENST00000469375	ENST00000598188		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-intron	ENST00000469375	ENST00000359435		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-intron	ENST00000469375	ENST00000447614		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-intron	ENST00000469375	ENST00000601043		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-intron	ENST00000469375	ENST00000448635		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-intron	ENST00000469375	ENST00000595632		ChiTaRS3.1			BF982291	RNF216	chr7	5821171	-	BABAM1	chr19	17392866	+
intron-3UTR	ENST00000340950	ENST00000531709		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000340950	ENST00000294172		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000340950	ENST00000532297		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000340950	ENST00000533048		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000340950	ENST00000531131		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000340950	ENST00000439713		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000396901	ENST00000531709		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000396901	ENST00000294172		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000396901	ENST00000532297		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000396901	ENST00000533048		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000396901	ENST00000531131		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000396901	ENST00000439713		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000352614	ENST00000531709		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000352614	ENST00000294172		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000352614	ENST00000532297		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000352614	ENST00000533048		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000352614	ENST00000531131		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000352614	ENST00000439713		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000606253	ENST00000531709		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000606253	ENST00000294172		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000606253	ENST00000532297		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000606253	ENST00000533048		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-3UTR	ENST00000606253	ENST00000531131		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
intron-intron	ENST00000606253	ENST00000439713		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-3UTR	ENST00000585544	ENST00000531709		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-intron	ENST00000585544	ENST00000294172		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-intron	ENST00000585544	ENST00000532297		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-intron	ENST00000585544	ENST00000533048		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-3UTR	ENST00000585544	ENST00000531131		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-intron	ENST00000585544	ENST00000439713		ChiTaRS3.1			DB136765	NFKBID	chr19	36388677	-	NXF1	chr11	62567601	-
5CDS-3UTR	ENST00000369485	ENST00000546390		ChiTaRS3.1			BG206505	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000265607	ENST00000546390		ChiTaRS3.1			BG206505	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000538899	ENST00000546390		ChiTaRS3.1			BG206505	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000369475	ENST00000546390		ChiTaRS3.1			BG206505	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-5UTR	ENST00000366510	ENST00000266718		ChiTaRS3.1			AU100094	SCCPDH	chr1	246927610	+	LUM	chr12	91505251	-
5CDS-5UTR	ENST00000366510	ENST00000548071		ChiTaRS3.1			AU100094	SCCPDH	chr1	246927610	+	LUM	chr12	91505251	-
intron-3CDS	ENST00000377795	ENST00000367858		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000524929		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000413996		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000237305		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000367857		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000528577		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000475719		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000377795	ENST00000489458		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-3CDS	ENST00000353334	ENST00000367858		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000524929		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000413996		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000237305		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000367857		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000528577		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000475719		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000353334	ENST00000489458		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-3CDS	ENST00000524315	ENST00000367858		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000524929		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000413996		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000237305		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000367857		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000528577		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000475719		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000524315	ENST00000489458		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-3CDS	ENST00000009530	ENST00000367858		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000524929		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000413996		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000237305		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000367857		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000528577		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000475719		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-intron	ENST00000009530	ENST00000489458		ChiTaRS3.1			BP270914	CD74	chr5	149785844	-	SGK1	chr6	134495708	-
intron-5UTR	ENST00000375640	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375640	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375640	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000375641	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375641	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375641	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000375638	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375638	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375638	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000375635	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375635	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375635	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000375639	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375639	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375639	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000375642	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375642	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375642	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000395789	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000395789	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000395789	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000375633	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375633	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000375633	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000395788	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000395788	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000395788	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000424962	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000424962	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000424962	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000456268	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000456268	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000456268	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000435938	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000435938	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000435938	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000433752	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000433752	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000433752	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000458514	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000458514	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000458514	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000549426	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000549426	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000549426	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000550200	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000550200	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000550200	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000430690	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000430690	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000430690	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000436558	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000436558	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000436558	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000456690	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000456690	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000456690	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000439907	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000439907	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000439907	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000444974	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000444974	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000444974	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000439865	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000439865	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000439865	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000413638	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000413638	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000413638	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000423640	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000423640	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000423640	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000444192	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000444192	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000444192	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000551797	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000551797	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000551797	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000552514	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000552514	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000552514	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000440361	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000440361	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000440361	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000443974	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000443974	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000443974	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000416886	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000416886	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000416886	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000436205	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000436205	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000436205	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000450610	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000450610	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000450610	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000433697	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000433697	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000433697	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000414434	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000414434	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000414434	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000421605	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000421605	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000421605	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000444331	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000444331	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000444331	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000551957	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000551957	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000551957	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000550492	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000550492	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000550492	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000423916	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000423916	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000423916	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000436495	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000436495	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000436495	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000426843	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000426843	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000426843	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000421039	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000421039	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000421039	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000414536	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000414536	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000414536	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000400038	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400038	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400038	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000383384	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000383384	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000383384	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000383385	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000383385	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000383385	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000383383	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000383383	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000383383	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000547624	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000547624	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000547624	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000550685	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000550685	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000550685	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000400037	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400037	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400037	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000400035	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400035	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400035	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-5UTR	ENST00000400034	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400034	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
intron-intron	ENST00000400034	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
5UTR-5UTR	ENST00000400039	ENST00000231461		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
5UTR-intron	ENST00000400039	ENST00000451528		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
5UTR-intron	ENST00000400039	ENST00000507360		ChiTaRS3.1			DB164704	C6orf48	chr6	3098574	+	ST8SIA4	chr5	100238927	-
5CDS-intron	ENST00000323688	ENST00000425146		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000446737		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000372010		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000519681		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000372007		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000518291		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000484442		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000262836		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000360648		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000323688	ENST00000417227		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000425146		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000446737		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000372010		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000519681		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000372007		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000518291		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000484442		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000262836		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000360648		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000529010	ENST00000417227		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000425146		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000446737		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000372010		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000519681		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000372007		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000518291		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000484442		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000262836		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000360648		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
5CDS-intron	ENST00000458064	ENST00000417227		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000425146		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000446737		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000372010		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000519681		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000372007		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000518291		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000484442		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000262836		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000360648		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-intron	ENST00000532240	ENST00000417227		ChiTaRS3.1			CB243708	NUCB2	chr11	17323332	-	PAK3	chrX	110411782	-
intron-3CDS	ENST00000452313	ENST00000372429		ChiTaRS3.1			AW170403	NPIPB7	chr16	28548776	+	USP20	chr9	132632009	-
intron-3CDS	ENST00000452313	ENST00000315480		ChiTaRS3.1			AW170403	NPIPB7	chr16	28548776	+	USP20	chr9	132632009	-
intron-3CDS	ENST00000452313	ENST00000358355		ChiTaRS3.1			AW170403	NPIPB7	chr16	28548776	+	USP20	chr9	132632009	-
intron-intron	ENST00000452313	ENST00000472108		ChiTaRS3.1			AW170403	NPIPB7	chr16	28548776	+	USP20	chr9	132632009	-
intron-3CDS	ENST00000364938	ENST00000419617		ChiTaRS3.1			CN419802	SNHG3	chr1	28834673	+	STK3	chr8	99539146	-
intron-3CDS	ENST00000364938	ENST00000523601		ChiTaRS3.1			CN419802	SNHG3	chr1	28834673	+	STK3	chr8	99539146	-
intron-intron	ENST00000364938	ENST00000521768		ChiTaRS3.1			CN419802	SNHG3	chr1	28834673	+	STK3	chr8	99539146	-
intron-3UTR	ENST00000545182	ENST00000325874		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
intron-intron	ENST00000545182	ENST00000581280		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
intron-intron	ENST00000545182	ENST00000394744		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
3UTR-3UTR	ENST00000280800	ENST00000325874		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
3UTR-intron	ENST00000280800	ENST00000581280		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
3UTR-intron	ENST00000280800	ENST00000394744		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
intron-3UTR	ENST00000547163	ENST00000325874		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
intron-intron	ENST00000547163	ENST00000581280		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
intron-intron	ENST00000547163	ENST00000394744		ChiTaRS3.1			AW182776	PLBD2	chr12	113827092	-	RAB11FIP4	chr17	29865126	-
intron-3CDS	ENST00000300584	ENST00000371399		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000072644		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000539954		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000300584	ENST00000469457		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000371399		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000072644		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000539954		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000409931	ENST00000469457		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000371399		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000072644		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000539954		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000492078	ENST00000469457		ChiTaRS3.1			BM047092	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
5CDS-intron	ENST00000562955	ENST00000429150		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000416623		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000392309		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000392307		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000437412		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000444202		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000493898		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000360537		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000354765		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000367572		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000562955	ENST00000367571		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000429150		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000416623		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000392309		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000392307		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000437412		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000444202		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000493898		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000360537		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000354765		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000367572		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
5CDS-intron	ENST00000372442	ENST00000367571		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000429150		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000416623		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000392309		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000392307		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000437412		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000444202		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000493898		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000360537		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000354765		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000367572		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000310739	ENST00000367571		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000429150		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000416623		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000392309		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000392307		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000437412		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000444202		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000493898		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000360537		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000354765		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000367572		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000372450	ENST00000367571		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000429150		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000416623		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000392309		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000392307		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000437412		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000444202		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000493898		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000360537		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000354765		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000367572		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
intron-intron	ENST00000471177	ENST00000367571		ChiTaRS3.1			N76235	SZT2	chr1	43897466	+	PLAGL1	chr6	144324493	-
3UTR-3UTR	ENST00000354618	ENST00000300584		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
3UTR-3UTR	ENST00000354618	ENST00000409931		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
3UTR-intron	ENST00000354618	ENST00000492078		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000469141	ENST00000300584		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000469141	ENST00000409931		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-intron	ENST00000469141	ENST00000492078		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000466743	ENST00000300584		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-3UTR	ENST00000466743	ENST00000409931		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
intron-intron	ENST00000466743	ENST00000492078		ChiTaRS3.1			W25181	THRAP3	chr1	36770634	+	TBC1D2B	chr15	78288158	-
5CDS-3UTR	ENST00000263036	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000263036	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000263036	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000263036	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378764	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378764	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378764	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378764	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
intron-3UTR	ENST00000482140	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
intron-3UTR	ENST00000482140	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
intron-intron	ENST00000482140	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
intron-intron	ENST00000482140	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378757	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378757	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378757	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378757	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378752	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378752	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378752	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378752	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378748	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378748	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378748	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378748	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378747	ENST00000418919		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-3UTR	ENST00000378747	ENST00000258145		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378747	ENST00000543646		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
5CDS-intron	ENST00000378747	ENST00000542058		ChiTaRS3.1			N40382	OPTN	chr10	13164435	+	GNS	chr12	65109037	-
intron-intron	ENST00000326739	ENST00000326739		ChiTaRS3.1			EC557924	IMPDH2	chr3	49061784	-	IMPDH2	chrMT	289	-
intron-3UTR	ENST00000368020	ENST00000370918		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368020	ENST00000304434		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368020	ENST00000542638		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368020	ENST00000541407		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368020	ENST00000486973		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368020	ENST00000370913		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368021	ENST00000370918		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368021	ENST00000304434		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368021	ENST00000542638		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368021	ENST00000541407		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368021	ENST00000486973		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368021	ENST00000370913		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000435396	ENST00000370918		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000435396	ENST00000304434		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000435396	ENST00000542638		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000435396	ENST00000541407		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000435396	ENST00000486973		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000435396	ENST00000370913		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368019	ENST00000370918		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368019	ENST00000304434		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-3UTR	ENST00000368019	ENST00000542638		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368019	ENST00000541407		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368019	ENST00000486973		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
intron-intron	ENST00000368019	ENST00000370913		ChiTaRS3.1			AV686607	USF1	chr1	161013096	-	ELOVL5	chr6	53132882	-
5CDS-5UTR	ENST00000260408	ENST00000378518		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000260408	ENST00000605895		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000260408	ENST00000378513		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000260408	ENST00000378512		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000260408	ENST00000488353		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000402627	ENST00000378518		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000402627	ENST00000605895		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000402627	ENST00000378513		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000402627	ENST00000378512		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000402627	ENST00000488353		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000561288	ENST00000378518		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000561288	ENST00000605895		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000561288	ENST00000378513		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000561288	ENST00000378512		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000561288	ENST00000488353		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000396140	ENST00000378518		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000396140	ENST00000605895		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000396140	ENST00000378513		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000396140	ENST00000378512		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5CDS-5UTR	ENST00000396140	ENST00000488353		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5UTR-5UTR	ENST00000558733	ENST00000378518		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5UTR-5UTR	ENST00000558733	ENST00000605895		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5UTR-5UTR	ENST00000558733	ENST00000378513		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5UTR-5UTR	ENST00000558733	ENST00000378512		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
5UTR-5UTR	ENST00000558733	ENST00000488353		ChiTaRS3.1			BF033257	ADAM10	chr15	59041679	-	RER1	chr1	2327221	+
intron-intron	ENST00000352981	ENST00000368869		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-3UTR	ENST00000352981	ENST00000358776		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000352981	ENST00000496730		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000265164	ENST00000368869		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-3UTR	ENST00000265164	ENST00000358776		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000265164	ENST00000496730		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000510324	ENST00000368869		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-3UTR	ENST00000510324	ENST00000358776		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000510324	ENST00000496730		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000505486	ENST00000368869		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-3UTR	ENST00000505486	ENST00000358776		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
intron-intron	ENST00000505486	ENST00000496730		ChiTaRS3.1			BE567326	CASP6	chr4	110610562	-	ACADSB	chr10	124813793	+
5CDS-5UTR	ENST00000375643	ENST00000264021		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000375643	ENST00000264020		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000375643	ENST00000530872		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-intron	ENST00000375643	ENST00000527868		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5UTR-5UTR	ENST00000375629	ENST00000264021		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5UTR-5UTR	ENST00000375629	ENST00000264020		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5UTR-5UTR	ENST00000375629	ENST00000530872		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5UTR-intron	ENST00000375629	ENST00000527868		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000443024	ENST00000264021		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000443024	ENST00000264020		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000443024	ENST00000530872		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-intron	ENST00000443024	ENST00000527868		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000447699	ENST00000264021		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000447699	ENST00000264020		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-5UTR	ENST00000447699	ENST00000530872		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
5CDS-intron	ENST00000447699	ENST00000527868		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-5UTR	ENST00000375627	ENST00000264021		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-5UTR	ENST00000375627	ENST00000264020		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-5UTR	ENST00000375627	ENST00000530872		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-intron	ENST00000375627	ENST00000527868		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-5UTR	ENST00000474340	ENST00000264021		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-5UTR	ENST00000474340	ENST00000264020		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-5UTR	ENST00000474340	ENST00000530872		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-intron	ENST00000474340	ENST00000527868		ChiTaRS3.1			BE560487	IARS	chr9	95018961	-	IFT46	chr11	118430581	-
intron-3CDS	ENST00000541179	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000541179	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000541179	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000541179	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3CDS	ENST00000379749	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379749	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379749	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379749	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3CDS	ENST00000379747	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379747	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379747	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379747	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3CDS	ENST00000379743	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379743	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379743	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379743	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3CDS	ENST00000379742	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379742	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379742	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000379742	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3CDS	ENST00000541481	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000541481	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000541481	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000541481	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3CDS	ENST00000497145	ENST00000533760		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000497145	ENST00000397957		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000497145	ENST00000316851		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-3UTR	ENST00000497145	ENST00000401611		ChiTaRS3.1			DA360025	POSTN	chr13	38148181	-	NCAM1	chr11	113078662	+
intron-5UTR	ENST00000311713	ENST00000287611		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000311713	ENST00000265023		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000311713	ENST00000447445		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000278856	ENST00000287611		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000278856	ENST00000265023		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000278856	ENST00000447445		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000529106	ENST00000287611		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000529106	ENST00000265023		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000529106	ENST00000447445		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000525239	ENST00000287611		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000525239	ENST00000265023		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000525239	ENST00000447445		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000525752	ENST00000287611		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000525752	ENST00000265023		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000525752	ENST00000447445		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000540620	ENST00000287611		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000540620	ENST00000265023		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-5UTR	ENST00000540620	ENST00000447445		ChiTaRS3.1			AU120291	WDR74	chr11	62609096	-	KNG1	chr3	186435141	+
intron-intron	ENST00000331110	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000331110	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000331110	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000331110	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000348120	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000348120	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000348120	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000348120	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366563	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366563	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366563	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366563	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366564	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366564	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366564	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366564	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366565	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366565	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366565	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366565	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000446183	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000446183	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000446183	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000446183	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366562	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366562	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366562	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000366562	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000401882	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000401882	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000401882	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000401882	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000407727	ENST00000326317		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000407727	ENST00000534910		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000407727	ENST00000570923		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000407727	ENST00000572208		ChiTaRS3.1			CA306626	RGS7	chr1	241161840	+	SGSH	chr17	78197108	-
intron-intron	ENST00000321560	ENST00000416947		ChiTaRS3.1			BC015725	PLD6	chr17	17116084	-	IFNAR1	chr21	34728286	+
intron-intron	ENST00000321560	ENST00000493503		ChiTaRS3.1			BC015725	PLD6	chr17	17116084	-	IFNAR1	chr21	34728286	+
intron-3UTR	ENST00000321560	ENST00000270139		ChiTaRS3.1			BC015725	PLD6	chr17	17116084	-	IFNAR1	chr21	34728286	+
intron-intron	ENST00000321560	ENST00000442357		ChiTaRS3.1			BC015725	PLD6	chr17	17116084	-	IFNAR1	chr21	34728286	+
intron-3CDS	ENST00000597652	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597652	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597652	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597652	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000596604	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000596604	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000596604	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000596604	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000597342	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597342	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597342	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597342	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000597832	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597832	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597832	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597832	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000595295	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000595295	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000595295	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000595295	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000600634	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000600634	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000600634	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000600634	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000435989	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000435989	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000435989	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000435989	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000597807	ENST00000315183		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597807	ENST00000562829		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597807	ENST00000395799		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-intron	ENST00000597807	ENST00000432286		ChiTaRS3.1			BF922727	ZNF814	chr19	58379539	-	TNRC6A	chr16	24828236	+
intron-3CDS	ENST00000295902	ENST00000450454		ChiTaRS3.1			BC019675	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000295902	ENST00000374601		ChiTaRS3.1			BC019675	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000295902	ENST00000461794		ChiTaRS3.1			BC019675	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-3CDS	ENST00000564377	ENST00000450454		ChiTaRS3.1			BC019675	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000564377	ENST00000374601		ChiTaRS3.1			BC019675	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
intron-intron	ENST00000564377	ENST00000461794		ChiTaRS3.1			BC019675	PRICKLE2	chr3	64084170	-	TCEA3	chr1	23713829	-
Frame-shit	ENST00000324932	ENST00000322536		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000324932	ENST00000526794		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
5CDS-intron	ENST00000324932	ENST00000534221		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000359171	ENST00000322536		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000359171	ENST00000526794		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
5CDS-intron	ENST00000359171	ENST00000534221		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000355260	ENST00000322536		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000355260	ENST00000526794		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
5CDS-intron	ENST00000355260	ENST00000534221		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000397004	ENST00000322536		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000397004	ENST00000526794		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
5CDS-intron	ENST00000397004	ENST00000534221		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000397007	ENST00000322536		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
Frame-shit	ENST00000397007	ENST00000526794		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
5CDS-intron	ENST00000397007	ENST00000534221		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
intron-3CDS	ENST00000488828	ENST00000322536		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
intron-3CDS	ENST00000488828	ENST00000526794		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
intron-intron	ENST00000488828	ENST00000534221		ChiTaRS3.1			AB000268	NUP98	chr11	3752621	-	DDX10	chr11	108559663	+
3UTR-intron	ENST00000356166	ENST00000378953		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000356166	ENST00000337752		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000356166	ENST00000378947		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000356166	ENST00000407797		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000356166	ENST00000464024		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000568722	ENST00000378953		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000568722	ENST00000337752		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000568722	ENST00000378947		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000568722	ENST00000407797		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000568722	ENST00000464024		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000482749	ENST00000378953		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000482749	ENST00000337752		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000482749	ENST00000378947		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000482749	ENST00000407797		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000482749	ENST00000464024		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000395073	ENST00000378953		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000395073	ENST00000337752		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000395073	ENST00000378947		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000395073	ENST00000407797		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-intron	ENST00000395073	ENST00000464024		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000287468	ENST00000378953		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000287468	ENST00000337752		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000287468	ENST00000378947		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000287468	ENST00000407797		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
3UTR-intron	ENST00000287468	ENST00000464024		ChiTaRS3.1			BI010451	FBRS	chr16	30681828	+	C5orf56	chr5	131819635	-
intron-5UTR	ENST00000392341	ENST00000508628		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392341	ENST00000456466		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392341	ENST00000582970		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392341	ENST00000319921		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-intron	ENST00000392341	ENST00000336301		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-intron	ENST00000392341	ENST00000427003		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
5UTR-5UTR	ENST00000582743	ENST00000508628		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
5UTR-5UTR	ENST00000582743	ENST00000456466		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
5UTR-5UTR	ENST00000582743	ENST00000582970		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
5UTR-5UTR	ENST00000582743	ENST00000319921		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
5UTR-intron	ENST00000582743	ENST00000336301		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
5UTR-intron	ENST00000582743	ENST00000427003		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
3UTR-5UTR	ENST00000584781	ENST00000508628		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
3UTR-5UTR	ENST00000584781	ENST00000456466		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
3UTR-5UTR	ENST00000584781	ENST00000582970		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
3UTR-5UTR	ENST00000584781	ENST00000319921		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
3UTR-intron	ENST00000584781	ENST00000336301		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
3UTR-intron	ENST00000584781	ENST00000427003		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392339	ENST00000508628		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392339	ENST00000456466		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392339	ENST00000582970		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000392339	ENST00000319921		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-intron	ENST00000392339	ENST00000336301		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-intron	ENST00000392339	ENST00000427003		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000581287	ENST00000508628		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000581287	ENST00000456466		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000581287	ENST00000582970		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-5UTR	ENST00000581287	ENST00000319921		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-intron	ENST00000581287	ENST00000336301		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-intron	ENST00000581287	ENST00000427003		ChiTaRS3.1			AA373754	SLC16A3	chr17	80186983	+	RNF213	chr17	78237458	+
intron-3CDS	ENST00000455015	ENST00000260356		ChiTaRS3.1			AW085572	CIDEC	chr3	10011457	+	THBS1	chr15	39882180	-
intron-3CDS	ENST00000336832	ENST00000260356		ChiTaRS3.1			AW085572	CIDEC	chr3	10011457	+	THBS1	chr15	39882180	-
intron-3CDS	ENST00000423850	ENST00000260356		ChiTaRS3.1			AW085572	CIDEC	chr3	10011457	+	THBS1	chr15	39882180	-
intron-3CDS	ENST00000383817	ENST00000260356		ChiTaRS3.1			AW085572	CIDEC	chr3	10011457	+	THBS1	chr15	39882180	-
intron-3CDS	ENST00000430427	ENST00000260356		ChiTaRS3.1			AW085572	CIDEC	chr3	10011457	+	THBS1	chr15	39882180	-
intron-3CDS	ENST00000443115	ENST00000260356		ChiTaRS3.1			AW085572	CIDEC	chr3	10011457	+	THBS1	chr15	39882180	-
intron-3CDS	ENST00000291458	ENST00000234590		ChiTaRS3.1			AK090592	CCDC58	chr3	122078635	-	ENO1	chr1	8938746	-
intron-3CDS	ENST00000497726	ENST00000234590		ChiTaRS3.1			AK090592	CCDC58	chr3	122078635	-	ENO1	chr1	8938746	-
intron-3CDS	ENST00000466854	ENST00000234590		ChiTaRS3.1			AK090592	CCDC58	chr3	122078635	-	ENO1	chr1	8938746	-
In-frame	ENST00000479899	ENST00000234590		ChiTaRS3.1			AK090592	CCDC58	chr3	122078635	-	ENO1	chr1	8938746	-
intron-3CDS	ENST00000452271	ENST00000340438		ChiTaRS3.1			BQ008176	SBSN	chr19	36015640	+	GSPT2	chrX	51487604	-
intron-3CDS	ENST00000518157	ENST00000340438		ChiTaRS3.1			BQ008176	SBSN	chr19	36015640	+	GSPT2	chrX	51487604	-
5UTR-3CDS	ENST00000607797	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000607797	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000606233	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000606233	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000606739	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000606739	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000510254	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000510254	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000607831	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000607831	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000606165	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000606165	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000606188	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000606188	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000607195	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000607195	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000607112	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000607112	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000606696	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000606696	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000504474	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
5UTR-3CDS	ENST00000504474	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000507963	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000507963	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
Frame-shit	ENST00000513055	ENST00000377107		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
Frame-shit	ENST00000513055	ENST00000218348		ChiTaRS3.1			AK092258	NR2F1-AS1	chr5	92889467	-	USP11	chrX	47099985	+
intron-3CDS	ENST00000546111	ENST00000394155		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000370690		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000535737		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000543669		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000394153		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000345434		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000539015		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000370683		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000546111	ENST00000370676		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000546111	ENST00000477080		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000394155		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000370690		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000535737		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000543669		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000394153		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000345434		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000539015		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000370683		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000535923	ENST00000370676		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000535923	ENST00000477080		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000394155		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000370690		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000535737		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000543669		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000394153		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000345434		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000539015		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000370683		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000542912	ENST00000370676		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000542912	ENST00000477080		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000394155		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000370690		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000535737		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000543669		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000394153		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000345434		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000539015		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000370683		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000440277	ENST00000370676		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000440277	ENST00000477080		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000394155		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000370690		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000535737		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000543669		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000394153		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000345434		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000539015		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000370683		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000399433	ENST00000370676		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000399433	ENST00000477080		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000394155		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000370690		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000535737		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000543669		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000394153		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000345434		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000539015		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000370683		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-3CDS	ENST00000544134	ENST00000370676		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000544134	ENST00000477080		ChiTaRS3.1			DA822142	PHB2	chr12	7079739	-	FHL1	chrX	135290092	+
intron-intron	ENST00000342160	ENST00000358763		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000342160	ENST00000332840		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000342160	ENST00000467095		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000262854	ENST00000358763		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000262854	ENST00000332840		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000262854	ENST00000467095		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000474288	ENST00000358763		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000474288	ENST00000332840		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000474288	ENST00000467095		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000218328	ENST00000358763		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000218328	ENST00000332840		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
intron-intron	ENST00000218328	ENST00000467095		ChiTaRS3.1			AA368608	HUWE1	chrX	53600880	-	SYN3	chr22	33256082	-
3UTR-intron	ENST00000534336	ENST00000330714		ChiTaRS3.1			BE763816	MALAT1	chr11	65268341	-	MX2	chr21	42737892	+
3UTR-intron	ENST00000534336	ENST00000543692		ChiTaRS3.1			BE763816	MALAT1	chr11	65268341	-	MX2	chr21	42737892	+
3UTR-intron	ENST00000534336	ENST00000496774		ChiTaRS3.1			BE763816	MALAT1	chr11	65268341	-	MX2	chr21	42737892	+
5CDS-3UTR	ENST00000430935	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000430935	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000430935	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-intron	ENST00000430935	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000495038	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000495038	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000495038	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-intron	ENST00000495038	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000474035	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000474035	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000474035	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-intron	ENST00000474035	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000478836	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000478836	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000478836	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-intron	ENST00000478836	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000464848	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000464848	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-3UTR	ENST00000464848	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-intron	ENST00000464848	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
3UTR-3UTR	ENST00000481482	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
3UTR-3UTR	ENST00000481482	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
3UTR-3UTR	ENST00000481482	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
3UTR-intron	ENST00000481482	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
intron-3UTR	ENST00000343187	ENST00000555997		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
intron-3UTR	ENST00000343187	ENST00000439696		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
intron-3UTR	ENST00000343187	ENST00000336440		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
intron-intron	ENST00000343187	ENST00000408913		ChiTaRS3.1			CN312778	TTC26	chr7	138822663	+	ZFP36L1	chr14	69256556	-
5CDS-intron	ENST00000264258	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
intron-intron	ENST00000409000	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
5CDS-intron	ENST00000409028	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
5CDS-intron	ENST00000409320	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
5CDS-intron	ENST00000409733	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
5CDS-intron	ENST00000409650	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
5CDS-intron	ENST00000409038	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
3UTR-intron	ENST00000409711	ENST00000371627		ChiTaRS3.1			BC024171	RPL31	chr2	101622534	+	TNKS2	chr10	93567202	-
intron-3CDS	ENST00000332050	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000332050	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000397938	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000406548	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3CDS	ENST00000331029	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000414183	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000333395	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000266269		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000405309		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000351933		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
Frame-shit	ENST00000332035	ENST00000215919		ChiTaRS3.1			AF254086	EWSR1	chr22	29684775	+	PATZ1	chr22	31740831	-
intron-3UTR	ENST00000338244	ENST00000367993		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000338244	ENST00000392179		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-intron	ENST00000338244	ENST00000476409		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000338244	ENST00000465923		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000379333	ENST00000367993		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000379333	ENST00000392179		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-intron	ENST00000379333	ENST00000476409		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000379333	ENST00000465923		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000424750	ENST00000367993		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000424750	ENST00000392179		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-intron	ENST00000424750	ENST00000476409		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000424750	ENST00000465923		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000468355	ENST00000367993		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000468355	ENST00000392179		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-intron	ENST00000468355	ENST00000476409		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
intron-3UTR	ENST00000468355	ENST00000465923		ChiTaRS3.1			BM708210	SLC23A2	chr20	4835006	-	NDUFS2	chr1	161184136	+
5CDS-3UTR	ENST00000254108	ENST00000294868		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-3UTR	ENST00000254108	ENST00000287713		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-intron	ENST00000254108	ENST00000473046		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-3UTR	ENST00000380244	ENST00000294868		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-3UTR	ENST00000380244	ENST00000287713		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-intron	ENST00000380244	ENST00000473046		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-3UTR	ENST00000568685	ENST00000294868		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-3UTR	ENST00000568685	ENST00000287713		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
5CDS-intron	ENST00000568685	ENST00000473046		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
intron-3UTR	ENST00000474990	ENST00000294868		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
intron-3UTR	ENST00000474990	ENST00000287713		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
intron-intron	ENST00000474990	ENST00000473046		ChiTaRS3.1			CN288204	FUS	chr16	31195568	+	NMNAT2	chr1	183218381	-
intron-intron	ENST00000282050	ENST00000579226		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000282050	ENST00000217652		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000282050	ENST00000578611		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000282050	ENST00000585090		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000282050	ENST00000580887		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000282050	ENST00000536605		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000593152	ENST00000579226		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000593152	ENST00000217652		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000593152	ENST00000578611		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000593152	ENST00000585090		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000593152	ENST00000580887		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000593152	ENST00000536605		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000590665	ENST00000579226		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000590665	ENST00000217652		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000590665	ENST00000578611		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000590665	ENST00000585090		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000590665	ENST00000580887		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000590665	ENST00000536605		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000398752	ENST00000579226		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000398752	ENST00000217652		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000398752	ENST00000578611		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000398752	ENST00000585090		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000398752	ENST00000580887		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000398752	ENST00000536605		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000591267	ENST00000579226		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000591267	ENST00000217652		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000591267	ENST00000578611		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-intron	ENST00000591267	ENST00000585090		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000591267	ENST00000580887		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-5UTR	ENST00000591267	ENST00000536605		ChiTaRS3.1			BP259811	ATP5A1	chr18	43671735	-	MYL12A	chr18	3252279	+
intron-3UTR	ENST00000454189	ENST00000286298		ChiTaRS3.1			BF366551	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000398361	ENST00000286298		ChiTaRS3.1			BF366551	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000316715	ENST00000286298		ChiTaRS3.1			BF366551	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000493677	ENST00000286298		ChiTaRS3.1			BF366551	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000355135	ENST00000286298		ChiTaRS3.1			BF366551	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3UTR	ENST00000356942	ENST00000286298		ChiTaRS3.1			BF366551	GPM6B	chrX	13792309	-	SLC26A2	chr5	149366700	+
intron-3CDS	ENST00000311713	ENST00000263035		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3UTR	ENST00000311713	ENST00000465617		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3CDS	ENST00000278856	ENST00000263035		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3UTR	ENST00000278856	ENST00000465617		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3CDS	ENST00000529106	ENST00000263035		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3UTR	ENST00000529106	ENST00000465617		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3CDS	ENST00000525239	ENST00000263035		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3UTR	ENST00000525239	ENST00000465617		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3CDS	ENST00000525752	ENST00000263035		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3UTR	ENST00000525752	ENST00000465617		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3CDS	ENST00000540620	ENST00000263035		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3UTR	ENST00000540620	ENST00000465617		ChiTaRS3.1			DA440878	WDR74	chr11	62609077	-	DHTKD1	chr10	12139775	+
intron-3CDS	ENST00000429845	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000429845	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000357467	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000341435	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000295720	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383771	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000383770	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000275262		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000392127		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000453779		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000361752		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000361195		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000498182	ENST00000424802		ChiTaRS3.1			AF142420	NEK10	chr3	27258070	-	QKI	chr6	163836232	+
intron-3CDS	ENST00000360319	ENST00000329970		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3UTR	ENST00000360319	ENST00000480191		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3CDS	ENST00000422373	ENST00000329970		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3UTR	ENST00000422373	ENST00000480191		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3CDS	ENST00000369850	ENST00000329970		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3UTR	ENST00000369850	ENST00000480191		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3CDS	ENST00000369856	ENST00000329970		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3UTR	ENST00000369856	ENST00000480191		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3CDS	ENST00000344736	ENST00000329970		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3UTR	ENST00000344736	ENST00000480191		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3CDS	ENST00000498491	ENST00000329970		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
intron-3UTR	ENST00000498491	ENST00000480191		ChiTaRS3.1			BG028038	FLNA	chrX	153578420	-	GTF3C6	chr6	111280374	+
Frame-shit	ENST00000394963	ENST00000262429		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
Frame-shit	ENST00000394963	ENST00000416219		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
5CDS-3UTR	ENST00000394963	ENST00000420010		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
Frame-shit	ENST00000381513	ENST00000262429		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
Frame-shit	ENST00000381513	ENST00000416219		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
5CDS-3UTR	ENST00000381513	ENST00000420010		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
Frame-shit	ENST00000548573	ENST00000262429		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
Frame-shit	ENST00000548573	ENST00000416219		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
5CDS-3UTR	ENST00000548573	ENST00000420010		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
intron-3CDS	ENST00000549526	ENST00000262429		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
intron-3CDS	ENST00000549526	ENST00000416219		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
intron-3UTR	ENST00000549526	ENST00000420010		ChiTaRS3.1			AW389291	SMARCD1	chr12	50484310	+	ATP2C2	chr16	84456272	+
3UTR-3UTR	ENST00000297323	ENST00000409556		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
3UTR-3UTR	ENST00000297323	ENST00000312912		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
3UTR-3UTR	ENST00000297323	ENST00000409064		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
3UTR-3UTR	ENST00000297323	ENST00000542128		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
3UTR-intron	ENST00000297323	ENST00000485171		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
intron-3UTR	ENST00000432715	ENST00000409556		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
intron-3UTR	ENST00000432715	ENST00000312912		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
intron-3UTR	ENST00000432715	ENST00000409064		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
intron-3UTR	ENST00000432715	ENST00000542128		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
intron-intron	ENST00000432715	ENST00000485171		ChiTaRS3.1			BM693341	ADCY1	chr7	45754880	+	KDM3A	chr2	86719270	+
Frame-shit	ENST00000362883	ENST00000266070		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
Frame-shit	ENST00000362883	ENST00000395343		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
Frame-shit	ENST00000362883	ENST00000395340		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
Frame-shit	ENST00000362883	ENST00000395335		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
5CDS-intron	ENST00000362883	ENST00000370371		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
5CDS-intron	ENST00000362883	ENST00000370368		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
5CDS-intron	ENST00000362883	ENST00000354665		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
5CDS-intron	ENST00000362883	ENST00000370366		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
5CDS-intron	ENST00000362883	ENST00000266071		ChiTaRS3.1			DA299121	SNORD104	chr17	62223512	+	DIDO1	chr20	61527681	-
5CDS-intron	ENST00000274137	ENST00000397063		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-5UTR	ENST00000274137	ENST00000397062		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000274137	ENST00000446151		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000274137	ENST00000464747		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000274137	ENST00000423513		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000469176	ENST00000397063		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-5UTR	ENST00000469176	ENST00000397062		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000469176	ENST00000446151		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000469176	ENST00000464747		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
5CDS-intron	ENST00000469176	ENST00000423513		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
intron-intron	ENST00000510329	ENST00000397063		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
intron-5UTR	ENST00000510329	ENST00000397062		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
intron-intron	ENST00000510329	ENST00000446151		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
intron-intron	ENST00000510329	ENST00000464747		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
intron-intron	ENST00000510329	ENST00000423513		ChiTaRS3.1			BP291244	NDUFS6	chr5	1814558	+	NFE2L2	chr2	178129329	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911169	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911169	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911169	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911169	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
3UTR-3CDS	ENST00000433647	ENST00000297029		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3CDS	ENST00000433647	ENST00000519209		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3CDS	ENST00000433647	ENST00000445618		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3UTR	ENST00000433647	ENST00000473722		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000543411	ENST00000297029		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000543411	ENST00000519209		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000543411	ENST00000445618		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3UTR	ENST00000543411	ENST00000473722		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000438259	ENST00000297029		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000438259	ENST00000519209		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000438259	ENST00000445618		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3UTR	ENST00000438259	ENST00000473722		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3CDS	ENST00000325123	ENST00000297029		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3CDS	ENST00000325123	ENST00000519209		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3CDS	ENST00000325123	ENST00000445618		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
3UTR-3UTR	ENST00000325123	ENST00000473722		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000473575	ENST00000297029		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000473575	ENST00000519209		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3CDS	ENST00000473575	ENST00000445618		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3UTR	ENST00000473575	ENST00000473722		ChiTaRS3.1			BP223196	VIPR1	chr3	42578602	+	SCIN	chr7	12666226	+
intron-3UTR	ENST00000364849	ENST00000372692		ChiTaRS3.1			AV757657	SNHG6	chr8	67834731	-	SET	chr9	131457816	+
intron-intron	ENST00000364849	ENST00000409104		ChiTaRS3.1			AV757657	SNHG6	chr8	67834731	-	SET	chr9	131457816	+
intron-3UTR	ENST00000364849	ENST00000322030		ChiTaRS3.1			AV757657	SNHG6	chr8	67834731	-	SET	chr9	131457816	+
intron-intron	ENST00000364849	ENST00000372688		ChiTaRS3.1			AV757657	SNHG6	chr8	67834731	-	SET	chr9	131457816	+
intron-intron	ENST00000364849	ENST00000477806		ChiTaRS3.1			AV757657	SNHG6	chr8	67834731	-	SET	chr9	131457816	+
Frame-shit	ENST00000358823	ENST00000461153		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
Frame-shit	ENST00000358823	ENST00000420699		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-intron	ENST00000358823	ENST00000357042		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
In-frame	ENST00000413307	ENST00000461153		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
In-frame	ENST00000413307	ENST00000420699		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-intron	ENST00000413307	ENST00000357042		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
Frame-shit	ENST00000236925	ENST00000461153		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
Frame-shit	ENST00000236925	ENST00000420699		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
5CDS-intron	ENST00000236925	ENST00000357042		ChiTaRS3.1			BU567802	CAMSAP2	chr1	200827036	+	ANKRD36	chr2	97879277	+
intron-intron	ENST00000369582	ENST00000591206		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
intron-intron	ENST00000369582	ENST00000330501		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
intron-intron	ENST00000369582	ENST00000589420		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
intron-intron	ENST00000369582	ENST00000261333		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
intron-intron	ENST00000369582	ENST00000355632		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
intron-intron	ENST00000369582	ENST00000585800		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
intron-intron	ENST00000369582	ENST00000592264		ChiTaRS3.1			CF528409	CGA	chr6	87795273	+	ZNF397	chr18	32825326	-
Frame-shit	ENST00000252486	ENST00000447654		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
Frame-shit	ENST00000252486	ENST00000401473		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
Frame-shit	ENST00000252486	ENST00000311487		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
Frame-shit	ENST00000252486	ENST00000347617		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
Frame-shit	ENST00000252486	ENST00000395004		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
5CDS-3UTR	ENST00000252486	ENST00000478214		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
5CDS-3UTR	ENST00000252486	ENST00000374116		ChiTaRS3.1			AK130027	APOE	chr19	45411169	+	HMGA1	chr6	34210504	+
intron-3CDS	ENST00000567684	ENST00000356205		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000368623		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000368621		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000310483		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-5UTR	ENST00000567684	ENST00000537590		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-5UTR	ENST00000567684	ENST00000461071		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000356205		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
Frame-shit	ENST00000326152	ENST00000368623		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000368621		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000310483		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-5UTR	ENST00000326152	ENST00000537590		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-5UTR	ENST00000326152	ENST00000461071		ChiTaRS3.1			CB989158	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-intron	ENST00000267339	ENST00000318782		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000293978		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000576565		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000572687		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000267339	ENST00000574988		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000318782		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000293978		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000576565		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000572687		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000375758	ENST00000574988		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000318782		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000293978		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000576565		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000572687		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5UTR-intron	ENST00000489973	ENST00000574988		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000318782		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000293978		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000576565		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000572687		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
5CDS-intron	ENST00000310847	ENST00000574988		ChiTaRS3.1			BC011843	ANKRD10	chr13	111558380	-	PAQR4	chr16	3024657	-
In-frame	ENST00000415083	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000415083	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000415083	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542420	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542420	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000542743	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000542743	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
Frame-shit	ENST00000539849	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000539849	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000269137	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000269137	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
In-frame	ENST00000545952	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
5CDS-5UTR	ENST00000545952	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000336777		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000585241	ENST00000337502		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-5UTR	ENST00000585241	ENST00000476392		ChiTaRS3.1			AF230662	SS18	chr18	23612363	-	SSX2	chrX	52729630	-
intron-3CDS	ENST00000544564	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-intron	ENST00000544564	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-3CDS	ENST00000541571	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-intron	ENST00000541571	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-3CDS	ENST00000535424	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-intron	ENST00000535424	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-3CDS	ENST00000378799	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-intron	ENST00000378799	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-3CDS	ENST00000538565	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-intron	ENST00000538565	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-3CDS	ENST00000606369	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-intron	ENST00000606369	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-3CDS	ENST00000329908	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-intron	ENST00000329908	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-3CDS	ENST00000538850	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-intron	ENST00000538850	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-3CDS	ENST00000378798	ENST00000326793		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
3UTR-intron	ENST00000378798	ENST00000472860		ChiTaRS3.1			DB096091	IST1	chr16	71962153	+	ACAP2	chr3	195066047	-
intron-3CDS	ENST00000375377	ENST00000457580		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000375377	ENST00000388793		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000375377	ENST00000432932		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000375377	ENST00000347433		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000464386	ENST00000457580		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000464386	ENST00000388793		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000464386	ENST00000432932		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
intron-3CDS	ENST00000464386	ENST00000347433		ChiTaRS3.1			BE828436	KIAA1462	chr10	30302466	-	SRRT	chr7	100482871	+
5UTR-3CDS	ENST00000536668	ENST00000321867		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
5UTR-3CDS	ENST00000536668	ENST00000540647		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
Frame-shit	ENST00000544994	ENST00000321867		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
Frame-shit	ENST00000544994	ENST00000540647		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
In-frame	ENST00000228811	ENST00000321867		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
In-frame	ENST00000228811	ENST00000540647		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
In-frame	ENST00000540107	ENST00000321867		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
In-frame	ENST00000540107	ENST00000540647		ChiTaRS3.1			DB222914	PRR4	chr12	11000971	-	ULK1	chr12	132403871	+
3UTR-intron	ENST00000452148	ENST00000558351		ChiTaRS3.1			BC080653	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-3UTR	ENST00000452148	ENST00000334660		ChiTaRS3.1			BC080653	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
3UTR-intron	ENST00000452148	ENST00000560397		ChiTaRS3.1			BC080653	PCAT7	chr9	97330101	+	CHP1	chr15	41573325	+
intron-intron	ENST00000344120	ENST00000366855		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000344120	ENST00000508775		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000344120	ENST00000476238		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000344120	ENST00000496851		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000434127	ENST00000366855		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000434127	ENST00000508775		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000434127	ENST00000476238		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000434127	ENST00000496851		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000503582	ENST00000366855		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000503582	ENST00000508775		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000503582	ENST00000476238		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
intron-intron	ENST00000503582	ENST00000496851		ChiTaRS3.1			AA482318	SPRY4	chr5	141691529	-	RNASET2	chr6	167368914	-
5CDS-3UTR	ENST00000216146	ENST00000293894		ChiTaRS3.1			AA242792	RPL3	chr22	39711373	-	SOX8	chr16	1036443	+
5UTR-3UTR	ENST00000465618	ENST00000293894		ChiTaRS3.1			AA242792	RPL3	chr22	39711373	-	SOX8	chr16	1036443	+
5CDS-3UTR	ENST00000401609	ENST00000293894		ChiTaRS3.1			AA242792	RPL3	chr22	39711373	-	SOX8	chr16	1036443	+
Frame-shit	ENST00000439590	ENST00000216146		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000439590	ENST00000465618		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000439590	ENST00000401609		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
Frame-shit	ENST00000311111	ENST00000216146		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000311111	ENST00000465618		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000311111	ENST00000401609		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
Frame-shit	ENST00000584577	ENST00000216146		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000584577	ENST00000465618		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000584577	ENST00000401609		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
In-frame	ENST00000534490	ENST00000216146		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000534490	ENST00000465618		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000534490	ENST00000401609		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
Frame-shit	ENST00000533498	ENST00000216146		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000533498	ENST00000465618		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
5CDS-5UTR	ENST00000533498	ENST00000401609		ChiTaRS3.1			CD368190	RPL38	chr17	72205334	-	RPL3	chr22	39710181	+
intron-3CDS	ENST00000494188	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
intron-3CDS	ENST00000409892	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
In-frame	ENST00000409784	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
intron-3CDS	ENST00000398529	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
In-frame	ENST00000409751	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
intron-3CDS	ENST00000260638	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
intron-3CDS	ENST00000356214	ENST00000225964		ChiTaRS3.1			BF326262	RAB1A	chr2	65318116	-	COL1A1	chr17	48264078	-
intron-3CDS	ENST00000607797	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607797	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606233	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606233	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606739	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606739	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000510254	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000510254	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607831	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607831	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606165	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606165	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606188	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606188	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607195	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607195	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607112	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000607112	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606696	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000606696	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000504474	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000504474	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000507963	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000507963	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000513055	ENST00000374316		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000513055	ENST00000605930		ChiTaRS3.1			BE159362	NR2F1-AS1	chr5	92833637	-	ITPR3	chr6	33647857	+
intron-3CDS	ENST00000303113	ENST00000221930		ChiTaRS3.1			CD368725	DONSON	chr21	35284665	+	TGFB1	chr19	41854326	+
intron-3CDS	ENST00000453626	ENST00000221930		ChiTaRS3.1			CD368725	DONSON	chr21	35284665	+	TGFB1	chr19	41854326	+
intron-3CDS	ENST00000303071	ENST00000221930		ChiTaRS3.1			CD368725	DONSON	chr21	35284665	+	TGFB1	chr19	41854326	+
intron-3CDS	ENST00000432378	ENST00000221930		ChiTaRS3.1			CD368725	DONSON	chr21	35284665	+	TGFB1	chr19	41854326	+
3UTR-intron	ENST00000244007	ENST00000317568		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000244007	ENST00000531296		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000244007	ENST00000355991		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000244007	ENST00000416776		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373272	ENST00000317568		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373272	ENST00000531296		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373272	ENST00000355991		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373272	ENST00000416776		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373271	ENST00000317568		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373271	ENST00000531296		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373271	ENST00000355991		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
3UTR-intron	ENST00000373271	ENST00000416776		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
intron-intron	ENST00000608689	ENST00000317568		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
intron-intron	ENST00000608689	ENST00000531296		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
intron-intron	ENST00000608689	ENST00000355991		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
intron-intron	ENST00000608689	ENST00000416776		ChiTaRS3.1			CK724856	PLCG1	chr20	39804198	-	FRMD8	chr11	65168339	-
In-frame	ENST00000439590	ENST00000261249		ChiTaRS3.1			CA432338	RPL38	chr17	72205967	-	TRMT5	chr14	61442204	+
Frame-shit	ENST00000311111	ENST00000261249		ChiTaRS3.1			CA432338	RPL38	chr17	72205967	-	TRMT5	chr14	61442204	+
Frame-shit	ENST00000584577	ENST00000261249		ChiTaRS3.1			CA432338	RPL38	chr17	72205967	-	TRMT5	chr14	61442204	+
intron-3CDS	ENST00000534490	ENST00000261249		ChiTaRS3.1			CA432338	RPL38	chr17	72205967	-	TRMT5	chr14	61442204	+
Frame-shit	ENST00000533498	ENST00000261249		ChiTaRS3.1			CA432338	RPL38	chr17	72205967	-	TRMT5	chr14	61442204	+
intron-3CDS	ENST00000406581	ENST00000306243		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000406581	ENST00000559991		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000223361	ENST00000306243		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000223361	ENST00000559991		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000452185	ENST00000306243		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000452185	ENST00000559991		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000481763	ENST00000306243		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3CDS	ENST00000481763	ENST00000559991		ChiTaRS3.1			BQ447574	POLD2	chr7	44154406	+	CHST14	chr15	40764316	-
intron-3UTR	ENST00000314100	ENST00000404666		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000314100	ENST00000295156		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000314100	ENST00000406397		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000314100	ENST00000483921		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000481247	ENST00000404666		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000481247	ENST00000295156		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000481247	ENST00000406397		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000481247	ENST00000483921		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000419706	ENST00000404666		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000419706	ENST00000295156		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000419706	ENST00000406397		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000419706	ENST00000483921		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000408958	ENST00000404666		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000408958	ENST00000295156		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000408958	ENST00000406397		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000408958	ENST00000483921		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000403056	ENST00000404666		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000403056	ENST00000295156		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000403056	ENST00000406397		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000403056	ENST00000483921		ChiTaRS3.1			AX746689	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000254799	ENST00000488633		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000254799	ENST00000469320		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000439371	ENST00000488633		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000439371	ENST00000469320		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000502323	ENST00000488633		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000502323	ENST00000469320		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000545193	ENST00000488633		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000545193	ENST00000469320		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000508091	ENST00000488633		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-intron	ENST00000508091	ENST00000469320		ChiTaRS3.1			AW779166	GRSF1	chr4	71698910	-	CIAO1	chr2	96938508	+
intron-3UTR	ENST00000441802	ENST00000231061		ChiTaRS3.1			BP382257	FAT1	chr4	187532554	-	SPARC	chr5	151042077	-
intron-intron	ENST00000441802	ENST00000537849		ChiTaRS3.1			BP382257	FAT1	chr4	187532554	-	SPARC	chr5	151042077	-
intron-3UTR	ENST00000512347	ENST00000231061		ChiTaRS3.1			BP382257	FAT1	chr4	187532554	-	SPARC	chr5	151042077	-
intron-intron	ENST00000512347	ENST00000537849		ChiTaRS3.1			BP382257	FAT1	chr4	187532554	-	SPARC	chr5	151042077	-
3UTR-3CDS	ENST00000374700	ENST00000295897		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000374700	ENST00000415165		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000374700	ENST00000503124		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000374700	ENST00000509063		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000374700	ENST00000401494		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3UTR	ENST00000374700	ENST00000505649		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000485106	ENST00000295897		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000485106	ENST00000415165		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000485106	ENST00000503124		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000485106	ENST00000509063		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3CDS	ENST00000485106	ENST00000401494		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
3UTR-3UTR	ENST00000485106	ENST00000505649		ChiTaRS3.1			AV653907	AOX1	chr2	201535676	+	ALB	chr4	74283944	+
5CDS-3UTR	ENST00000544484	ENST00000404138		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000544484	ENST00000375647		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-intron	ENST00000544484	ENST00000374651		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000357008	ENST00000404138		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000357008	ENST00000375647		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-intron	ENST00000357008	ENST00000374651		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000309577	ENST00000404138		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000309577	ENST00000375647		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-intron	ENST00000309577	ENST00000374651		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000544040	ENST00000404138		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-3UTR	ENST00000544040	ENST00000375647		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5CDS-intron	ENST00000544040	ENST00000374651		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5UTR-3UTR	ENST00000540960	ENST00000404138		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5UTR-3UTR	ENST00000540960	ENST00000375647		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
5UTR-intron	ENST00000540960	ENST00000374651		ChiTaRS3.1			BF811359	CHD4	chr12	6696883	-	ZBTB40	chr1	22854741	+
intron-intron	ENST00000367160	ENST00000330978		ChiTaRS3.1			BG260838	DSTYK	chr1	205116462	-	BOLA2	chr16	29982800	+
intron-intron	ENST00000367161	ENST00000330978		ChiTaRS3.1			BG260838	DSTYK	chr1	205116462	-	BOLA2	chr16	29982800	+
intron-intron	ENST00000367162	ENST00000330978		ChiTaRS3.1			BG260838	DSTYK	chr1	205116462	-	BOLA2	chr16	29982800	+
3UTR-3UTR	ENST00000372621	ENST00000579820		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
3UTR-3UTR	ENST00000372621	ENST00000318240		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
3UTR-3UTR	ENST00000372621	ENST00000582392		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000541520	ENST00000579820		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000541520	ENST00000318240		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000541520	ENST00000582392		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000475060	ENST00000579820		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000475060	ENST00000318240		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000475060	ENST00000582392		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000543104	ENST00000579820		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000543104	ENST00000318240		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000543104	ENST00000582392		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000372616	ENST00000579820		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000372616	ENST00000318240		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-3UTR	ENST00000372616	ENST00000582392		ChiTaRS3.1			AA044815	CTPS1	chr1	41478084	-	C18orf32	chr18	47008653	+
intron-5UTR	ENST00000375320	ENST00000312515		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000375320	ENST00000376991		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000375320	ENST00000527119		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000375320	ENST00000532933		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000359492	ENST00000312515		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000359492	ENST00000376991		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000359492	ENST00000527119		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000359492	ENST00000532933		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000375329	ENST00000312515		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000375329	ENST00000376991		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000375329	ENST00000527119		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000375329	ENST00000532933		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000375323	ENST00000312515		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000375323	ENST00000376991		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000375323	ENST00000527119		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000375323	ENST00000532933		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000236850	ENST00000312515		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-5UTR	ENST00000236850	ENST00000376991		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000236850	ENST00000527119		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-intron	ENST00000236850	ENST00000532933		ChiTaRS3.1			BJ995037	APOA1	chr11	116707015	-	DRAP1	chr11	65686958	+
intron-3CDS	ENST00000390237	ENST00000306384		ChiTaRS3.1			BF880862	IGKC	chr2	89156859	-	VAMP5	chr2	85820230	+
intron-3CDS	ENST00000397910	ENST00000549441		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000397910	ENST00000395069		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-intron	ENST00000397910	ENST00000552651		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000380951	ENST00000549441		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000380951	ENST00000395069		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-intron	ENST00000380951	ENST00000552651		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000596956	ENST00000549441		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3CDS	ENST00000596956	ENST00000395069		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-intron	ENST00000596956	ENST00000552651		ChiTaRS3.1			AU133673	MUC16	chr19	9049994	-	DNAJC22	chr12	49742766	+
intron-3UTR	ENST00000403299	ENST00000375078		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-5UTR	ENST00000403299	ENST00000489020		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-3UTR	ENST00000406271	ENST00000375078		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-5UTR	ENST00000406271	ENST00000489020		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-3UTR	ENST00000251973	ENST00000375078		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-5UTR	ENST00000251973	ENST00000489020		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-3UTR	ENST00000494166	ENST00000375078		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-5UTR	ENST00000494166	ENST00000489020		ChiTaRS3.1			AA316883	CARD10	chr22	37903857	-	CAMK2N1	chr1	20809975	-
intron-intron	ENST00000371348	ENST00000426342		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371348	ENST00000399232		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371348	ENST00000399222		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371348	ENST00000357362		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371348	ENST00000439988		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371348	ENST00000472499		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371344	ENST00000426342		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371344	ENST00000399232		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371344	ENST00000399222		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371344	ENST00000357362		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371344	ENST00000439988		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371344	ENST00000472499		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000234831	ENST00000426342		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000234831	ENST00000399232		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000234831	ENST00000399222		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000234831	ENST00000357362		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000234831	ENST00000439988		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000234831	ENST00000472499		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371341	ENST00000426342		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371341	ENST00000399232		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371341	ENST00000399222		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371341	ENST00000357362		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371341	ENST00000439988		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371341	ENST00000472499		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000470395	ENST00000426342		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000470395	ENST00000399232		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000470395	ENST00000399222		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000470395	ENST00000357362		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000470395	ENST00000439988		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000470395	ENST00000472499		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371337	ENST00000426342		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371337	ENST00000399232		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371337	ENST00000399222		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371337	ENST00000357362		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371337	ENST00000439988		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
intron-intron	ENST00000371337	ENST00000472499		ChiTaRS3.1			BF733157	TMEM59	chr1	54507458	-	MDGA2	chr14	47670148	+
Frame-shit	ENST00000418929	ENST00000252891		ChiTaRS3.1			BE253886	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-intron	ENST00000418929	ENST00000598779		ChiTaRS3.1			BE253886	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-intron	ENST00000418929	ENST00000540131		ChiTaRS3.1			BE253886	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-5UTR	ENST00000418929	ENST00000599594		ChiTaRS3.1			BE253886	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
intron-5UTR	ENST00000526713	ENST00000412585		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000526713	ENST00000425848		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000526713	ENST00000450871		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000526713	ENST00000359635		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000526713	ENST00000435618		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000526713	ENST00000421349		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-5UTR	ENST00000344327	ENST00000412585		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000344327	ENST00000425848		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000344327	ENST00000450871		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000344327	ENST00000359635		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000344327	ENST00000435618		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000344327	ENST00000421349		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-5UTR	ENST00000532133	ENST00000412585		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000532133	ENST00000425848		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000532133	ENST00000450871		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000532133	ENST00000359635		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000532133	ENST00000435618		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000532133	ENST00000421349		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-5UTR	ENST00000360497	ENST00000412585		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000360497	ENST00000425848		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000360497	ENST00000450871		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000360497	ENST00000359635		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000360497	ENST00000435618		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000360497	ENST00000421349		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-5UTR	ENST00000348423	ENST00000412585		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000348423	ENST00000425848		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000348423	ENST00000450871		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000348423	ENST00000359635		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000348423	ENST00000435618		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-intron	ENST00000348423	ENST00000421349		ChiTaRS3.1			DA646697	TRPC6	chr11	101412091	-	HLA-B	chr6	31324945	-
intron-3UTR	ENST00000359373	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000359373	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000359373	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000359373	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000495878	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000495878	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000495878	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000495878	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000455638	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000455638	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000455638	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000455638	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000393605	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000393605	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000393605	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000393605	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000334211	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000334211	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000334211	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000334211	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000393609	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000393609	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000393609	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000393609	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000426523	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000426523	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000426523	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000426523	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000429686	ENST00000357365		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000429686	ENST00000298537		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-3UTR	ENST00000429686	ENST00000371725		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
intron-intron	ENST00000429686	ENST00000461693		ChiTaRS3.1			BG681298	ARAP1	chr11	72465961	-	SDCCAG3	chr9	139296489	-
5CDS-intron	ENST00000372484	ENST00000409527		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372484	ENST00000321878		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372484	ENST00000026218		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372484	ENST00000470411		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372484	ENST00000544860		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000354880	ENST00000409527		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000354880	ENST00000321878		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000354880	ENST00000026218		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000354880	ENST00000470411		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000354880	ENST00000544860		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000191018	ENST00000409527		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000191018	ENST00000321878		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000191018	ENST00000026218		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000191018	ENST00000470411		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000191018	ENST00000544860		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372459	ENST00000409527		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372459	ENST00000321878		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-3UTR	ENST00000372459	ENST00000026218		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372459	ENST00000470411		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
5CDS-intron	ENST00000372459	ENST00000544860		ChiTaRS3.1			BM760783	CTSA	chr20	44521067	+	PIGQ	chr16	633475	+
intron-intron	ENST00000519560	ENST00000375068		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000375053		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000347546		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000375062		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000519560	ENST00000218439		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000519560	ENST00000375058		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000519560	ENST00000375060		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000396224		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000497484		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000375068		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000375053		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000347546		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000375062		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000332966	ENST00000218439		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000332966	ENST00000375058		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000332966	ENST00000375060		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000396224		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000497484		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000375068		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000375053		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000347546		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000375062		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000404867	ENST00000218439		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000404867	ENST00000375058		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000404867	ENST00000375060		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000396224		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000497484		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000375068		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000375053		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000347546		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000375062		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000521130	ENST00000218439		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000521130	ENST00000375058		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000521130	ENST00000375060		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000396224		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000497484		ChiTaRS3.1			BC023515	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
5CDS-3UTR	ENST00000311117	ENST00000372733		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000311117	ENST00000537976		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5UTR-3UTR	ENST00000334914	ENST00000372733		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5UTR-3UTR	ENST00000334914	ENST00000537976		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000257745	ENST00000372733		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000257745	ENST00000537976		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000334877	ENST00000372733		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000334877	ENST00000537976		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000476671	ENST00000372733		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
5CDS-3UTR	ENST00000476671	ENST00000537976		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
intron-3UTR	ENST00000480368	ENST00000372733		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
intron-3UTR	ENST00000480368	ENST00000537976		ChiTaRS3.1			BE177716	KMT2E	chr7	104719333	+	SDC4	chr20	43955376	-
intron-3UTR	ENST00000284268	ENST00000267970		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000284268	ENST00000346495		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000284268	ENST00000424443		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000284268	ENST00000561277		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000284268	ENST00000559494		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000284268	ENST00000558745		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-intron	ENST00000284268	ENST00000558394		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000535119	ENST00000267970		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000535119	ENST00000346495		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000535119	ENST00000424443		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000535119	ENST00000561277		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000535119	ENST00000559494		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000535119	ENST00000558745		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-intron	ENST00000535119	ENST00000558394		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000503939	ENST00000267970		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000503939	ENST00000346495		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000503939	ENST00000424443		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000503939	ENST00000561277		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000503939	ENST00000559494		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-3UTR	ENST00000503939	ENST00000558745		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
intron-intron	ENST00000503939	ENST00000558394		ChiTaRS3.1			AK222631	ANKH	chr5	14711324	-	TSPAN3	chr15	77338843	-
5CDS-intron	ENST00000355151	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000355151	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000397496	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000397496	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000555345	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000555345	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000432849	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000432849	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000553711	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000553711	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-intron	ENST00000397505	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-intron	ENST00000397505	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-intron	ENST00000557221	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-intron	ENST00000557221	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-intron	ENST00000311892	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-intron	ENST00000311892	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000556840	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000556840	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
3UTR-intron	ENST00000461594	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
3UTR-intron	ENST00000461594	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000555536	ENST00000329957		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
5CDS-intron	ENST00000555536	ENST00000526462		ChiTaRS3.1			AA933040	MRPL52	chr14	23302656	-	MOB2	chr11	1778597	+
intron-5UTR	ENST00000311713	ENST00000469972		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000311713	ENST00000372047		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000311713	ENST00000372050		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000311713	ENST00000393160		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000311713	ENST00000393157		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000311713	ENST00000542690		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000311713	ENST00000372062		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000469972		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000372047		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000372050		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000393160		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000393157		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000542690		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000278856	ENST00000372062		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000469972		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000372047		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000372050		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000393160		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000393157		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000542690		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000529106	ENST00000372062		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000469972		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000372047		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000372050		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000393160		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000393157		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000542690		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525239	ENST00000372062		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000469972		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000372047		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000372050		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000393160		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000393157		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000542690		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000525752	ENST00000372062		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000469972		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000372047		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000372050		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000393160		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000393157		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000542690		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-5UTR	ENST00000540620	ENST00000372062		ChiTaRS3.1			DA276726	WDR74	chr11	62609096	-	RALGDS	chr9	135982526	-
intron-3UTR	ENST00000376630	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000376630	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000415649	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000415649	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000415289	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000415289	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000444683	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000444683	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000383597	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000383597	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-3UTR	ENST00000425603	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
intron-intron	ENST00000425603	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
3UTR-3UTR	ENST00000427936	ENST00000216044		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
3UTR-intron	ENST00000427936	ENST00000460605		ChiTaRS3.1			BG925470	HLA-E	chr6	1793088	+	GTPBP1	chr22	39128958	+
Frame-shit	ENST00000406337	ENST00000435504		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-5UTR	ENST00000406337	ENST00000336112		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-5UTR	ENST00000406337	ENST00000272341		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-intron	ENST00000406337	ENST00000404843		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-intron	ENST00000406337	ENST00000497092		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
In-frame	ENST00000265713	ENST00000435504		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-5UTR	ENST00000265713	ENST00000336112		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-5UTR	ENST00000265713	ENST00000272341		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-intron	ENST00000265713	ENST00000404843		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-intron	ENST00000265713	ENST00000497092		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
In-frame	ENST00000396930	ENST00000435504		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-5UTR	ENST00000396930	ENST00000336112		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-5UTR	ENST00000396930	ENST00000272341		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-intron	ENST00000396930	ENST00000404843		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
5CDS-intron	ENST00000396930	ENST00000497092		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
intron-3CDS	ENST00000485568	ENST00000435504		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
intron-5UTR	ENST00000485568	ENST00000336112		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
intron-5UTR	ENST00000485568	ENST00000272341		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
intron-intron	ENST00000485568	ENST00000404843		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
intron-intron	ENST00000485568	ENST00000497092		ChiTaRS3.1			AB084281	KAT6A	chr8	41800309	-	ASXL2	chr2	26068436	-
intron-intron	ENST00000409119	ENST00000358807		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000409119	ENST00000358577		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000409119	ENST00000368952		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000409119	ENST00000483856		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
5CDS-intron	ENST00000355716	ENST00000358807		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
5CDS-intron	ENST00000355716	ENST00000358577		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
5CDS-intron	ENST00000355716	ENST00000368952		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
5CDS-intron	ENST00000355716	ENST00000483856		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000442392	ENST00000358807		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000442392	ENST00000358577		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000442392	ENST00000368952		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-intron	ENST00000442392	ENST00000483856		ChiTaRS3.1			BI023922	TNFRSF14	chr1	2493212	+	MICAL1	chr6	109767212	-
intron-3CDS	ENST00000300584	ENST00000371399		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000072644		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000539954		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000300584	ENST00000469457		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000371399		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000072644		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000539954		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000409931	ENST00000469457		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000371399		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000072644		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000539954		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000492078	ENST00000469457		ChiTaRS3.1			BQ937210	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000454682	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000454682	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000550952	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000550952	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000356769	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000356769	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000552540	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000552540	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000393891	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000393891	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000548563	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000548563	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000546392	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000546392	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000551793	ENST00000259818		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-5UTR	ENST00000551793	ENST00000473006		ChiTaRS3.1			AW498865	NACA	chr12	57112658	-	TUBB2B	chr6	3226861	-
intron-3CDS	ENST00000383898	ENST00000346169		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000414031		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000392537		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000382330		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000350481		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000352767		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000427845		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000342981		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000319274		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000424196		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000411531		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-3CDS	ENST00000383898	ENST00000441154		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-5UTR	ENST00000383898	ENST00000434061		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-intron	ENST00000383898	ENST00000435046		ChiTaRS3.1			BF696853	RNU6-1	chr3	180949632	+	EIF4G1	chr3	184038425	+
intron-5UTR	ENST00000466368	ENST00000487500		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
intron-5UTR	ENST00000466368	ENST00000396467		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
intron-5UTR	ENST00000466368	ENST00000352983		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
intron-5UTR	ENST00000466368	ENST00000396466		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
intron-5UTR	ENST00000466368	ENST00000396465		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000485713	ENST00000487500		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000485713	ENST00000396467		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000485713	ENST00000352983		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000485713	ENST00000396466		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000485713	ENST00000396465		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000413384	ENST00000487500		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000413384	ENST00000396467		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000413384	ENST00000352983		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000413384	ENST00000396466		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000413384	ENST00000396465		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000310317	ENST00000487500		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000310317	ENST00000396467		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000310317	ENST00000352983		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000310317	ENST00000396466		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000310317	ENST00000396465		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000392826	ENST00000487500		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000392826	ENST00000396467		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000392826	ENST00000352983		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000392826	ENST00000396466		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000392826	ENST00000396465		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000461735	ENST00000487500		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000461735	ENST00000396467		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000461735	ENST00000352983		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000461735	ENST00000396466		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
5CDS-5UTR	ENST00000461735	ENST00000396465		ChiTaRS3.1			BG394529	SLC4A2	chr7	150761984	+	RPL7	chr8	74203318	-
intron-intron	ENST00000560410	ENST00000521485		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000369694		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000195649		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000439399		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000428679		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000437520		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000521743		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000520302		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000520213		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000560410	ENST00000519133		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000521485		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000369694		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000195649		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000439399		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000428679		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000437520		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000521743		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000520302		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000520213		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000216802	ENST00000519133		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000521485		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000369694		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000195649		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000439399		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000428679		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000437520		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000521743		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000520302		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000520213		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-intron	ENST00000471700	ENST00000519133		ChiTaRS3.1			BF884903	PSME2	chr14	24614339	-	SNAP91	chr6	84312558	+
intron-5UTR	ENST00000409817	ENST00000372390		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000372397		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000315660		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000372383		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000372384		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000372382		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000506081		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000409817	ENST00000514426		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000372390		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000372397		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000315660		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000372383		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000372384		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000372382		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000506081		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
5CDS-5UTR	ENST00000241393	ENST00000514426		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000372390		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000372397		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000315660		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000372383		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000372384		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000372382		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000506081		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
intron-5UTR	ENST00000466288	ENST00000514426		ChiTaRS3.1			CT004483	CXCR4	chr2	136875616	-	TSC22D3	chrX	106959180	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y15916	COL1A1	chr17	48268177	-	PDGFB	chr22	39631881	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y15916	COL1A1	chr17	48268177	-	PDGFB	chr22	39631881	-
intron-3CDS	ENST00000261978	ENST00000392975		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3CDS	ENST00000261978	ENST00000360793		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000261978	ENST00000584031		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000261978	ENST00000392976		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000261978	ENST00000582297		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000261978	ENST00000581573		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000261978	ENST00000448884		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000261978	ENST00000582034		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000261978	ENST00000542042		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-5UTR	ENST00000261978	ENST00000581163		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-5UTR	ENST00000261978	ENST00000582997		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3CDS	ENST00000556690	ENST00000392975		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3CDS	ENST00000556690	ENST00000360793		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000556690	ENST00000584031		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000556690	ENST00000392976		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000556690	ENST00000582297		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000556690	ENST00000581573		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000556690	ENST00000448884		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000556690	ENST00000582034		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000556690	ENST00000542042		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-5UTR	ENST00000556690	ENST00000581163		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-5UTR	ENST00000556690	ENST00000582997		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3CDS	ENST00000557425	ENST00000392975		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3CDS	ENST00000557425	ENST00000360793		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000557425	ENST00000584031		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000557425	ENST00000392976		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000557425	ENST00000582297		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000557425	ENST00000581573		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000557425	ENST00000448884		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000557425	ENST00000582034		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-3UTR	ENST00000557425	ENST00000542042		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-5UTR	ENST00000557425	ENST00000581163		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-5UTR	ENST00000557425	ENST00000582997		ChiTaRS3.1			BX648452	LTBP2	chr14	74975636	-	CYB561	chr17	61511801	-
intron-intron	ENST00000395965	ENST00000342947		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000395965	ENST00000419307		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000395965	ENST00000545231		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000395965	ENST00000409970		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000395965	ENST00000409775		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000395965	ENST00000559637		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000505869	ENST00000342947		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000505869	ENST00000419307		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000505869	ENST00000545231		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000505869	ENST00000409970		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000505869	ENST00000409775		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000505869	ENST00000559637		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509739	ENST00000342947		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509739	ENST00000419307		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509739	ENST00000545231		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000509739	ENST00000409970		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000509739	ENST00000409775		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509739	ENST00000559637		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509163	ENST00000342947		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509163	ENST00000419307		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509163	ENST00000545231		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000509163	ENST00000409970		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000509163	ENST00000409775		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000509163	ENST00000559637		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000504768	ENST00000342947		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000504768	ENST00000419307		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000504768	ENST00000545231		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000504768	ENST00000409970		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000504768	ENST00000409775		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-intron	ENST00000504768	ENST00000559637		ChiTaRS3.1			DA269661	FAM172A	chr5	92954356	-	DFNA5	chr7	24797083	-
intron-5UTR	ENST00000261623	ENST00000370918		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000261623	ENST00000304434		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-intron	ENST00000261623	ENST00000542638		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000261623	ENST00000541407		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000261623	ENST00000486973		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000261623	ENST00000370913		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000567174	ENST00000370918		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000567174	ENST00000304434		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-intron	ENST00000567174	ENST00000542638		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000567174	ENST00000541407		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000567174	ENST00000486973		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000567174	ENST00000370913		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000569359	ENST00000370918		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000569359	ENST00000304434		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-intron	ENST00000569359	ENST00000542638		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000569359	ENST00000541407		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000569359	ENST00000486973		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000569359	ENST00000370913		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000561972	ENST00000370918		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000561972	ENST00000304434		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-intron	ENST00000561972	ENST00000542638		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000561972	ENST00000541407		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000561972	ENST00000486973		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
intron-5UTR	ENST00000561972	ENST00000370913		ChiTaRS3.1			BM827569	CYBA	chr16	88712556	-	ELOVL5	chr6	53213660	-
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM770116	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM770116	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM770116	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM770116	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000334256	ENST00000292246		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-3CDS	ENST00000334256	ENST00000350459		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000396091		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000414522		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000451430		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000334256	ENST00000495772		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-3CDS	ENST00000469804	ENST00000292246		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-3CDS	ENST00000469804	ENST00000350459		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000396091		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000414522		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000451430		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
intron-intron	ENST00000469804	ENST00000495772		ChiTaRS3.1			AU124276	KPNA4	chr3	160219337	-	ANO10	chr3	43641984	-
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
Frame-shit	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF232000	KMT2A	chr11	118359411	+	KMT2A	chr11	118352664	-
intron-intron	ENST00000322886	ENST00000376406		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000376405		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000494654		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000427406		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000547874		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000551460		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000547700		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000481026		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000552522		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000420019		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000548112		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000550004		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000548103		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000473187		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000552474		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000420320		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000552263		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000551204		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000549428		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000495325		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000547681		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000449153		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000553048		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000546487		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000553196		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000494715		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000547353		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000383566		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000548827		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000552349		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000550408		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000481547		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000550688		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000440369		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000547047		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000548542		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000548248		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000482029		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000550500		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000435664		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000548433		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000551740		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000467476		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000322886	ENST00000546539		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000376406		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000376405		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000494654		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000427406		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000547874		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000551460		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000547700		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000481026		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000552522		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000420019		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000548112		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000550004		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000548103		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000473187		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000552474		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000420320		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000552263		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000551204		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000549428		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000495325		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000547681		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000449153		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000553048		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000546487		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000553196		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000494715		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000547353		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000383566		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000548827		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000552349		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000550408		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000481547		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000550688		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000440369		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000547047		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000548542		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000548248		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000482029		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000550500		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000435664		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000548433		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000551740		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000467476		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
intron-intron	ENST00000416496	ENST00000546539		ChiTaRS3.1			CV340093	E2F7	chr12	77419459	-	MDC1	chr6	2005525	-
Frame-shit	ENST00000394855	ENST00000335255		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000394855	ENST00000529652		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
intron-3CDS	ENST00000489435	ENST00000335255		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
intron-intron	ENST00000489435	ENST00000529652		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
Frame-shit	ENST00000343789	ENST00000335255		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000343789	ENST00000529652		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
Frame-shit	ENST00000394852	ENST00000335255		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000394852	ENST00000529652		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
Frame-shit	ENST00000446172	ENST00000335255		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000446172	ENST00000529652		ChiTaRS3.1			X60787	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
In-frame	ENST00000369016	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
5CDS-intron	ENST00000369016	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
In-frame	ENST00000369014	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
5CDS-intron	ENST00000369014	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
In-frame	ENST00000369009	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
5CDS-intron	ENST00000369009	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
In-frame	ENST00000339643	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
5CDS-intron	ENST00000339643	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000271690	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000271690	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000356527	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000356527	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000503345	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000503345	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000503241	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000503241	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000362052	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000362052	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
In-frame	ENST00000361532	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
5CDS-intron	ENST00000361532	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
In-frame	ENST00000361631	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
5CDS-intron	ENST00000361631	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000513281	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000513281	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-3CDS	ENST00000354702	ENST00000376447		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
intron-intron	ENST00000354702	ENST00000340717		ChiTaRS3.1			DB237062	ENSA	chr1	150598118	-	RASEF	chr9	85640837	-
3UTR-3UTR	ENST00000418604	ENST00000559717		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-3UTR	ENST00000418604	ENST00000360468		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000418604	ENST00000431652		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000418604	ENST00000430376		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000418604	ENST00000558538		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-3UTR	ENST00000303958	ENST00000559717		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-3UTR	ENST00000303958	ENST00000360468		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000303958	ENST00000431652		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000303958	ENST00000430376		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000303958	ENST00000558538		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-3UTR	ENST00000361621	ENST00000559717		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-3UTR	ENST00000361621	ENST00000360468		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000361621	ENST00000431652		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000361621	ENST00000430376		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-intron	ENST00000361621	ENST00000558538		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
intron-3UTR	ENST00000466486	ENST00000559717		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
intron-3UTR	ENST00000466486	ENST00000360468		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
intron-intron	ENST00000466486	ENST00000431652		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
intron-intron	ENST00000466486	ENST00000430376		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
intron-intron	ENST00000466486	ENST00000558538		ChiTaRS3.1			AV723721	PLP1	chrX	103045735	+	MAN2A2	chr15	91464074	+
3UTR-3UTR	ENST00000371953	ENST00000261313		ChiTaRS3.1			BG610830	PTEN	chr10	89726595	+	PEBP1	chr12	118582915	+
3UTR-intron	ENST00000371953	ENST00000542939		ChiTaRS3.1			BG610830	PTEN	chr10	89726595	+	PEBP1	chr12	118582915	+
intron-3UTR	ENST00000472832	ENST00000261313		ChiTaRS3.1			BG610830	PTEN	chr10	89726595	+	PEBP1	chr12	118582915	+
intron-intron	ENST00000472832	ENST00000542939		ChiTaRS3.1			BG610830	PTEN	chr10	89726595	+	PEBP1	chr12	118582915	+
intron-intron	ENST00000303927	ENST00000170447		ChiTaRS3.1			X06409	PRKCDBP	chr11	6340623	-	MKRN2	chr3	12641916	-
intron-intron	ENST00000303927	ENST00000411987		ChiTaRS3.1			X06409	PRKCDBP	chr11	6340623	-	MKRN2	chr3	12641916	-
intron-intron	ENST00000303927	ENST00000448482		ChiTaRS3.1			X06409	PRKCDBP	chr11	6340623	-	MKRN2	chr3	12641916	-
intron-intron	ENST00000530979	ENST00000170447		ChiTaRS3.1			X06409	PRKCDBP	chr11	6340623	-	MKRN2	chr3	12641916	-
intron-intron	ENST00000530979	ENST00000411987		ChiTaRS3.1			X06409	PRKCDBP	chr11	6340623	-	MKRN2	chr3	12641916	-
intron-intron	ENST00000530979	ENST00000448482		ChiTaRS3.1			X06409	PRKCDBP	chr11	6340623	-	MKRN2	chr3	12641916	-
intron-3CDS	ENST00000373570	ENST00000327044		ChiTaRS3.1			CA433490	RPL35	chr9	127620282	+	NOC2L	chr1	892529	+
intron-5UTR	ENST00000373570	ENST00000487214		ChiTaRS3.1			CA433490	RPL35	chr9	127620282	+	NOC2L	chr1	892529	+
intron-3CDS	ENST00000348462	ENST00000327044		ChiTaRS3.1			CA433490	RPL35	chr9	127620282	+	NOC2L	chr1	892529	+
intron-5UTR	ENST00000348462	ENST00000487214		ChiTaRS3.1			CA433490	RPL35	chr9	127620282	+	NOC2L	chr1	892529	+
5CDS-intron	ENST00000380682	ENST00000404771		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000372440		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000372443		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-3UTR	ENST00000380682	ENST00000286628		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-3UTR	ENST00000380682	ENST00000286627		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000354353		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000404857		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000406533		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000484507		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000481070		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5CDS-intron	ENST00000380682	ENST00000480683		ChiTaRS3.1			DA133314	FRMPD4	chrX	12734468	+	KCNMA1	chr10	78646715	-
5UTR-3CDS	ENST00000381602	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381602	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381602	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397962	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397962	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000309776	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000309776	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000509513	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000509513	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397959	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397959	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000381591	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000381591	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000403354	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000403354	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381607	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381607	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000402736	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000402736	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000602682	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000602682	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381604	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381604	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381584	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381584	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000558098	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000558098	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000545619	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000545619	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000535374	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000535374	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000344646		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374366		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374371		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000473115	ENST00000374370		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000473115	ENST00000335258		ChiTaRS3.1			BI669215	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000357654	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000357654	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000351666	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000351666	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000309486	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000309486	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000346315	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000346315	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000354071	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000354071	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000352993	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000352993	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000468300	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000468300	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000591534	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000591534	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000591849	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000591849	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000586385	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000586385	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000493795	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000493795	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000471181	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000471181	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000491747	ENST00000240055		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-5UTR	ENST00000491747	ENST00000551727		ChiTaRS3.1			BG427715	BRCA1	chr17	41277789	+	NFYB	chr12	104529311	-
intron-intron	ENST00000418089	ENST00000550574		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000418089	ENST00000541364		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000418089	ENST00000301072		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000418089	ENST00000549183		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000413720	ENST00000550574		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000413720	ENST00000541364		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000413720	ENST00000301072		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000413720	ENST00000549183		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367536	ENST00000550574		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367536	ENST00000541364		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367536	ENST00000301072		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367536	ENST00000549183		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367535	ENST00000550574		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367535	ENST00000541364		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367535	ENST00000301072		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000367535	ENST00000549183		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000469280	ENST00000550574		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000469280	ENST00000541364		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000469280	ENST00000301072		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
intron-intron	ENST00000469280	ENST00000549183		ChiTaRS3.1			CD368754	NCF2	chr1	183525014	+	TUBA1C	chr12	49666398	-
In-frame	ENST00000399788	ENST00000382582		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000355994		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000397875		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000397866		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000399788	ENST00000397865		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000527041		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000359645		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000528160		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000397869		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000354542		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000526111		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000580402		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000579129		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000578193		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000397863		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000397860		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000399788	ENST00000487778		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000382582		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000355994		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000397875		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000397866		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-3CDS	ENST00000540838	ENST00000397865		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000527041		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000359645		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000528160		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000397869		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000354542		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000526111		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000580402		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000579129		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000578193		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000397863		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000397860		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
intron-intron	ENST00000540838	ENST00000487778		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000382582		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000355994		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000397875		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000397866		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
In-frame	ENST00000382815	ENST00000397865		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000527041		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000359645		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000528160		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000397869		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000354542		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000526111		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000580402		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000579129		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000578193		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000397863		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000397860		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
5CDS-intron	ENST00000382815	ENST00000487778		ChiTaRS3.1			DB177419	KDM5A	chr12	498092	-	MBP	chr18	74696852	-
3UTR-3UTR	ENST00000359511	ENST00000356956		ChiTaRS3.1			AA740262	SLC25A44	chr1	156182462	-	IGF2R	chr6	160526429	-
3UTR-intron	ENST00000359511	ENST00000475584		ChiTaRS3.1			AA740262	SLC25A44	chr1	156182462	-	IGF2R	chr6	160526429	-
intron-3UTR	ENST00000423538	ENST00000356956		ChiTaRS3.1			AA740262	SLC25A44	chr1	156182462	-	IGF2R	chr6	160526429	-
intron-intron	ENST00000423538	ENST00000475584		ChiTaRS3.1			AA740262	SLC25A44	chr1	156182462	-	IGF2R	chr6	160526429	-
3UTR-3UTR	ENST00000469537	ENST00000356956		ChiTaRS3.1			AA740262	SLC25A44	chr1	156182462	-	IGF2R	chr6	160526429	-
3UTR-intron	ENST00000469537	ENST00000475584		ChiTaRS3.1			AA740262	SLC25A44	chr1	156182462	-	IGF2R	chr6	160526429	-
5CDS-intron	ENST00000379520	ENST00000537045		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379520	ENST00000263196		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379520	ENST00000545799		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379520	ENST00000473832		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379519	ENST00000537045		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379519	ENST00000263196		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379519	ENST00000545799		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000379519	ENST00000473832		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000261353	ENST00000537045		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000261353	ENST00000263196		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000261353	ENST00000545799		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000261353	ENST00000473832		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402003	ENST00000537045		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402003	ENST00000263196		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402003	ENST00000545799		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402003	ENST00000473832		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402708	ENST00000537045		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402708	ENST00000263196		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402708	ENST00000545799		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
5CDS-intron	ENST00000402708	ENST00000473832		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
3UTR-intron	ENST00000495673	ENST00000537045		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
3UTR-intron	ENST00000495673	ENST00000263196		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
3UTR-intron	ENST00000495673	ENST00000545799		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
3UTR-intron	ENST00000495673	ENST00000473832		ChiTaRS3.1			DB114316	YPEL5	chr2	30381687	+	DGCR2	chr22	19027322	-
In-frame	ENST00000276344	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000276344	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000276344	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000276344	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000276344	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393921	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393921	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393921	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393921	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393921	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370337	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370337	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370337	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370337	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370337	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393920	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393920	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000393920	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393920	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000393920	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370340	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370340	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370340	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370340	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370340	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370335	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370335	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000370335	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370335	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000370335	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000360243	ENST00000356761		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000360243	ENST00000299397		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
In-frame	ENST00000360243	ENST00000342245		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000360243	ENST00000533196		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
5CDS-intron	ENST00000360243	ENST00000527275		ChiTaRS3.1			AA378043	MAGEA4	chrX	151092837	+	SMPD1	chr11	6413115	+
Frame-shit	ENST00000369409	ENST00000272167		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
Frame-shit	ENST00000369409	ENST00000366837		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
5CDS-3UTR	ENST00000369409	ENST00000467015		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
Frame-shit	ENST00000369407	ENST00000272167		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
Frame-shit	ENST00000369407	ENST00000366837		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
5CDS-3UTR	ENST00000369407	ENST00000467015		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
3UTR-3CDS	ENST00000482968	ENST00000272167		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
3UTR-3CDS	ENST00000482968	ENST00000366837		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
3UTR-3UTR	ENST00000482968	ENST00000467015		ChiTaRS3.1			AW261826	PHGDH	chr1	120285616	-	EPHX1	chr1	226019583	-
intron-3CDS	ENST00000599680	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000309877	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000600911	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000596822	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000601291	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000377139	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000597198	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000593922	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000600022	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000599223	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000596765	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000599144	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000598808	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000377135	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3CDS	ENST00000442265	ENST00000221494		ChiTaRS3.1			CR989887	IRF3	chr19	50168596	-	SF3A2	chr19	2248149	+
intron-3UTR	ENST00000373713	ENST00000380680		ChiTaRS3.1			BP277249	FABP3	chr1	31838756	-	UBL3	chr13	30340610	-
intron-3UTR	ENST00000497275	ENST00000380680		ChiTaRS3.1			BP277249	FABP3	chr1	31838756	-	UBL3	chr13	30340610	-
intron-3CDS	ENST00000338316	ENST00000393892		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3UTR	ENST00000338316	ENST00000472031		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3UTR	ENST00000338316	ENST00000591072		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000338316	ENST00000592446		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000338316	ENST00000393888		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3CDS	ENST00000537121	ENST00000393892		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3UTR	ENST00000537121	ENST00000472031		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3UTR	ENST00000537121	ENST00000591072		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000537121	ENST00000592446		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000537121	ENST00000393888		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3CDS	ENST00000513693	ENST00000393892		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3UTR	ENST00000513693	ENST00000472031		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-3UTR	ENST00000513693	ENST00000591072		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000513693	ENST00000592446		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000513693	ENST00000393888		ChiTaRS3.1			CA441871	ADCY2	chr1	152005126	+	CNP	chr17	40125831	-
intron-intron	ENST00000228841	ENST00000400098		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000400100		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000400097		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000553597		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000390687		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000346403		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000554227		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000577565		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000228841	ENST00000444203		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000400098		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000400100		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000400097		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000553597		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000390687		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000346403		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000554227		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000577565		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-intron	ENST00000548438	ENST00000444203		ChiTaRS3.1			AI453127	MYL2	chr12	111348778	+	SNRPN	chr15	25333806	-
intron-3CDS	ENST00000381174	ENST00000371084		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000381174	ENST00000540265		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000381174	ENST00000371083		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-intron	ENST00000381174	ENST00000483707		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000419513	ENST00000371084		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000419513	ENST00000540265		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000419513	ENST00000371083		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-intron	ENST00000419513	ENST00000483707		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000426774	ENST00000371084		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000426774	ENST00000540265		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000426774	ENST00000371083		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-intron	ENST00000426774	ENST00000483707		ChiTaRS3.1			BE836713	XG	chrX	2693718	-	PGM1	chr1	64100606	+
intron-3CDS	ENST00000367498	ENST00000242848		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000367498	ENST00000378921		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000367498	ENST00000282007		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000367498	ENST00000470308		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-3CDS	ENST00000459929	ENST00000242848		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000459929	ENST00000378921		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000459929	ENST00000282007		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000459929	ENST00000470308		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-3CDS	ENST00000392007	ENST00000242848		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000392007	ENST00000378921		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000392007	ENST00000282007		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000392007	ENST00000470308		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-3CDS	ENST00000367497	ENST00000242848		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000367497	ENST00000378921		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000367497	ENST00000282007		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-intron	ENST00000367497	ENST00000470308		ChiTaRS3.1			BE932758	IVNS1ABP	chr1	185268858	-	ZC3H13	chr13	46549575	-
intron-3UTR	ENST00000264896	ENST00000342505		ChiTaRS3.1			BQ361764	SCARB2	chr4	77082602	-	JAK1	chr1	65300040	-
intron-intron	ENST00000264896	ENST00000465376		ChiTaRS3.1			BQ361764	SCARB2	chr4	77082602	-	JAK1	chr1	65300040	-
intron-3UTR	ENST00000452464	ENST00000342505		ChiTaRS3.1			BQ361764	SCARB2	chr4	77082602	-	JAK1	chr1	65300040	-
intron-intron	ENST00000452464	ENST00000465376		ChiTaRS3.1			BQ361764	SCARB2	chr4	77082602	-	JAK1	chr1	65300040	-
intron-3CDS	ENST00000447281	ENST00000344756		ChiTaRS3.1			CB125773	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000447281	ENST00000340368		ChiTaRS3.1			CB125773	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000447281	ENST00000342407		ChiTaRS3.1			CB125773	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000344756		ChiTaRS3.1			CB125773	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3CDS	ENST00000609896	ENST00000340368		ChiTaRS3.1			CB125773	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000609896	ENST00000342407		ChiTaRS3.1			CB125773	LL0XNC01-116E7.2	chrX	103173876	+	INSIG1	chr7	155099951	+
intron-3UTR	ENST00000297338	ENST00000337990		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000297338	ENST00000545618		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000297338	ENST00000447788		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000297338	ENST00000374839		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-5UTR	ENST00000297338	ENST00000488608		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523986	ENST00000337990		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523986	ENST00000545618		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523986	ENST00000447788		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523986	ENST00000374839		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-5UTR	ENST00000523986	ENST00000488608		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000517749	ENST00000337990		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000517749	ENST00000545618		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000517749	ENST00000447788		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000517749	ENST00000374839		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-5UTR	ENST00000517749	ENST00000488608		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000518055	ENST00000337990		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000518055	ENST00000545618		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000518055	ENST00000447788		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000518055	ENST00000374839		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-5UTR	ENST00000518055	ENST00000488608		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523547	ENST00000337990		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523547	ENST00000545618		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523547	ENST00000447788		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-3UTR	ENST00000523547	ENST00000374839		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-5UTR	ENST00000523547	ENST00000488608		ChiTaRS3.1			CX788771	RAD21	chr8	117870608	-	ZC4H2	chrX	64137256	-
intron-intron	ENST00000319592	ENST00000500779		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000319592	ENST00000513221		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000381793	ENST00000500779		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000381793	ENST00000513221		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000381795	ENST00000500779		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000381795	ENST00000513221		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000295971	ENST00000500779		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000295971	ENST00000513221		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000514014	ENST00000500779		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000514014	ENST00000513221		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000515809	ENST00000500779		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
intron-intron	ENST00000515809	ENST00000513221		ChiTaRS3.1			DB169159	RBM47	chr4	40505831	-	STARD4-AS1	chr5	111092891	-
5CDS-intron	ENST00000254108	ENST00000262027		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000254108	ENST00000315473		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000254108	ENST00000447721		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000380244	ENST00000262027		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000380244	ENST00000315473		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000380244	ENST00000447721		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000568685	ENST00000262027		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000568685	ENST00000315473		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
5CDS-intron	ENST00000568685	ENST00000447721		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
intron-intron	ENST00000474990	ENST00000262027		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
intron-intron	ENST00000474990	ENST00000315473		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
intron-intron	ENST00000474990	ENST00000447721		ChiTaRS3.1			S75763	FUS	chr16	31195717	+	MARS	chr12	57911538	-
intron-3UTR	ENST00000373053	ENST00000311956		ChiTaRS3.1			BP419174	MCU	chr10	74535598	+	ARHGAP1	chr11	46699404	-
intron-3UTR	ENST00000357157	ENST00000311956		ChiTaRS3.1			BP419174	MCU	chr10	74535598	+	ARHGAP1	chr11	46699404	-
intron-3UTR	ENST00000536019	ENST00000311956		ChiTaRS3.1			BP419174	MCU	chr10	74535598	+	ARHGAP1	chr11	46699404	-
intron-3UTR	ENST00000605416	ENST00000311956		ChiTaRS3.1			BP419174	MCU	chr10	74535598	+	ARHGAP1	chr11	46699404	-
Frame-shit	ENST00000491306	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000491306	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000491306	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
Frame-shit	ENST00000600880	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000600880	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000600880	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
Frame-shit	ENST00000446558	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000446558	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000446558	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
Frame-shit	ENST00000456586	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000456586	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000456586	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
Frame-shit	ENST00000598925	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000598925	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000598925	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
Frame-shit	ENST00000427280	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000427280	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000427280	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
Frame-shit	ENST00000441179	ENST00000367261		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000441179	ENST00000367259		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
5CDS-intron	ENST00000441179	ENST00000435533		ChiTaRS3.1			AA631668	RPL37A	chr2	217364685	-	KLHL12	chr1	202887306	+
intron-3CDS	ENST00000311936	ENST00000368321		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000311936	ENST00000368320		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000311936	ENST00000368319		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000311936	ENST00000482337		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000557334	ENST00000368321		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000557334	ENST00000368320		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000557334	ENST00000368319		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000557334	ENST00000482337		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000256078	ENST00000368321		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000256078	ENST00000368320		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000256078	ENST00000368319		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000256078	ENST00000482337		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000556131	ENST00000368321		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-3CDS	ENST00000556131	ENST00000368320		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000556131	ENST00000368319		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000556131	ENST00000482337		ChiTaRS3.1			BU632342	KRAS	chr12	25360242	+	KIAA0907	chr1	155887427	+
intron-intron	ENST00000544021	ENST00000544021		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000544021	ENST00000266556		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000544021	ENST00000545700		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000266556	ENST00000544021		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000266556	ENST00000266556		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000266556	ENST00000545700		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000545700	ENST00000544021		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000545700	ENST00000266556		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-intron	ENST00000545700	ENST00000545700		ChiTaRS3.1			BI020058	TAPBPL	chr12	6573646	-	TAPBPL	chr6	34252458	-
intron-3CDS	ENST00000396556	ENST00000284719		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000396556	ENST00000344357		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000396556	ENST00000428402		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000396556	ENST00000409546		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-intron	ENST00000396556	ENST00000392560		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-3CDS	ENST00000438237	ENST00000284719		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000438237	ENST00000344357		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000438237	ENST00000428402		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000438237	ENST00000409546		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-intron	ENST00000438237	ENST00000392560		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-3CDS	ENST00000467647	ENST00000284719		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000467647	ENST00000344357		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000467647	ENST00000428402		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000467647	ENST00000409546		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-intron	ENST00000467647	ENST00000392560		ChiTaRS3.1			BQ348677	OSBPL10	chr3	31843444	+	OLA1	chr2	175006728	-
intron-5UTR	ENST00000445552	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000337845	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000329240	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000573185	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000570550	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000336125	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000549904	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000550273	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000549665	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
intron-5UTR	ENST00000553155	ENST00000430983		ChiTaRS3.1			AV729016	ARL17A	chr17	492891	-	AMZ2P1	chr17	62971155	-
In-frame	ENST00000369221	ENST00000491148		ChiTaRS3.1			BC015104	PNLIP	chr10	118307949	+	CPB1	chr3	148558670	+
In-frame	ENST00000369221	ENST00000282957		ChiTaRS3.1			BC015104	PNLIP	chr10	118307949	+	CPB1	chr3	148558670	+
5CDS-intron	ENST00000369221	ENST00000498639		ChiTaRS3.1			BC015104	PNLIP	chr10	118307949	+	CPB1	chr3	148558670	+
3UTR-3CDS	ENST00000470562	ENST00000491148		ChiTaRS3.1			BC015104	PNLIP	chr10	118307949	+	CPB1	chr3	148558670	+
3UTR-3CDS	ENST00000470562	ENST00000282957		ChiTaRS3.1			BC015104	PNLIP	chr10	118307949	+	CPB1	chr3	148558670	+
3UTR-intron	ENST00000470562	ENST00000498639		ChiTaRS3.1			BC015104	PNLIP	chr10	118307949	+	CPB1	chr3	148558670	+
intron-5UTR	ENST00000432519	ENST00000452135		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000432519	ENST00000393360		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000432519	ENST00000455781		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000432519	ENST00000343111		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000432519	ENST00000347470		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-intron	ENST00000432519	ENST00000397072		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000432519	ENST00000425491		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-intron	ENST00000432519	ENST00000539014		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-intron	ENST00000432519	ENST00000524170		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-5UTR	ENST00000334133	ENST00000452135		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-5UTR	ENST00000334133	ENST00000393360		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-5UTR	ENST00000334133	ENST00000455781		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-5UTR	ENST00000334133	ENST00000343111		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-5UTR	ENST00000334133	ENST00000347470		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-intron	ENST00000334133	ENST00000397072		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-5UTR	ENST00000334133	ENST00000425491		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-intron	ENST00000334133	ENST00000539014		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5CDS-intron	ENST00000334133	ENST00000524170		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000483671	ENST00000452135		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000483671	ENST00000393360		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000483671	ENST00000455781		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000483671	ENST00000343111		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000483671	ENST00000347470		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-intron	ENST00000483671	ENST00000397072		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-5UTR	ENST00000483671	ENST00000425491		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-intron	ENST00000483671	ENST00000539014		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
intron-intron	ENST00000483671	ENST00000524170		ChiTaRS3.1			CB995744	RFTN1	chr3	16535231	-	MAPK9	chr5	179707609	-
5UTR-5UTR	ENST00000269214	ENST00000322247		ChiTaRS3.1			BG616150	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000269214	ENST00000402563		ChiTaRS3.1			BG616150	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000269214	ENST00000588475		ChiTaRS3.1			BG616150	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000580101	ENST00000322247		ChiTaRS3.1			BG616150	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000580101	ENST00000402563		ChiTaRS3.1			BG616150	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
5UTR-5UTR	ENST00000580101	ENST00000588475		ChiTaRS3.1			BG616150	ESCO1	chr18	19180584	-	FAM210A	chr18	13682106	-
3UTR-intron	ENST00000340857	ENST00000338316		ChiTaRS3.1			DR421898	H1F0	chr22	38202551	+	ADCY2	chr1	152005059	-
3UTR-intron	ENST00000340857	ENST00000537121		ChiTaRS3.1			DR421898	H1F0	chr22	38202551	+	ADCY2	chr1	152005059	-
3UTR-intron	ENST00000340857	ENST00000513693		ChiTaRS3.1			DR421898	H1F0	chr22	38202551	+	ADCY2	chr1	152005059	-
In-frame	ENST00000404488	ENST00000337233		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000404488	ENST00000359949		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-intron	ENST00000404488	ENST00000540930		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000404488	ENST00000541532		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000404488	ENST00000543171		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000328268	ENST00000337233		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000328268	ENST00000359949		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-intron	ENST00000328268	ENST00000540930		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000328268	ENST00000541532		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000328268	ENST00000543171		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000403427	ENST00000337233		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000403427	ENST00000359949		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-intron	ENST00000403427	ENST00000540930		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000403427	ENST00000541532		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000403427	ENST00000543171		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000407217	ENST00000337233		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
In-frame	ENST00000407217	ENST00000359949		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-intron	ENST00000407217	ENST00000540930		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000407217	ENST00000541532		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
5CDS-3UTR	ENST00000407217	ENST00000543171		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
intron-3CDS	ENST00000444954	ENST00000337233		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
intron-3CDS	ENST00000444954	ENST00000359949		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
intron-intron	ENST00000444954	ENST00000540930		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
intron-3UTR	ENST00000444954	ENST00000541532		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
intron-3UTR	ENST00000444954	ENST00000543171		ChiTaRS3.1			BF509192	CRELD2	chr22	50320941	-	P2RX4	chr12	121670259	-
intron-intron	ENST00000264896	ENST00000434600		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000264896	ENST00000538785		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000264896	ENST00000200639		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-3UTR	ENST00000264896	ENST00000371335		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000264896	ENST00000540603		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000452464	ENST00000434600		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000452464	ENST00000538785		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000452464	ENST00000200639		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-3UTR	ENST00000452464	ENST00000371335		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000452464	ENST00000540603		ChiTaRS3.1			BE890392	SCARB2	chr4	77080922	-	LAMP2	chrX	119571799	-
intron-intron	ENST00000368575	ENST00000398842		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000368575	ENST00000398809		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000368575	ENST00000461841		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000368575	ENST00000299366		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000368575	ENST00000224721		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000368575	ENST00000398788		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000368575	ENST00000475158		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000398842		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000398809		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000461841		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000299366		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000224721		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000398788		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
intron-intron	ENST00000462680	ENST00000475158		ChiTaRS3.1			W46202	RAB13	chr1	153954536	-	CDH23	chr10	73521531	-
5CDS-intron	ENST00000306735	ENST00000306735		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5CDS-intron	ENST00000306735	ENST00000586847		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5CDS-intron	ENST00000306735	ENST00000262197		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000306735		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000586847		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000262197		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000306735		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000586847		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000262197		ChiTaRS3.1			BE222251	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5UTR-3CDS	ENST00000393038	ENST00000321728		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000393038	ENST00000303531		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000393038	ENST00000482000		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000393038	ENST00000498058		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000537860	ENST00000321728		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000537860	ENST00000303531		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000537860	ENST00000482000		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000537860	ENST00000498058		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000409433	ENST00000321728		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000409433	ENST00000303531		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000409433	ENST00000482000		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000409433	ENST00000498058		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
intron-3CDS	ENST00000470557	ENST00000321728		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
intron-3CDS	ENST00000470557	ENST00000303531		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
intron-intron	ENST00000470557	ENST00000482000		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
intron-intron	ENST00000470557	ENST00000498058		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000579915	ENST00000321728		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-3CDS	ENST00000579915	ENST00000303531		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000579915	ENST00000482000		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
5UTR-intron	ENST00000579915	ENST00000498058		ChiTaRS3.1			DA481806	PTRH2	chr17	57784730	-	PRKCB	chr16	24166003	+
intron-intron	ENST00000225964	ENST00000543252		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000344138		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000540310		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-intron	ENST00000225964	ENST00000478445		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000544756		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3UTR	ENST00000225964	ENST00000399090		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-intron	ENST00000225964	ENST00000407075		ChiTaRS3.1			AI291777	COL1A1	chr17	48261640	+	GRAP2	chr22	40367199	-
intron-3CDS	ENST00000469379	ENST00000225426		ChiTaRS3.1			BU509373	DEXI	chr16	11035660	-	PSMB3	chr17	36916738	+
intron-3CDS	ENST00000331808	ENST00000225426		ChiTaRS3.1			BU509373	DEXI	chr16	11035660	-	PSMB3	chr17	36916738	+
Frame-shit	ENST00000366481	ENST00000405402		ChiTaRS3.1			AB208969	TRIM58	chr1	248028055	+	GSE1	chr16	85690882	+
Frame-shit	ENST00000366481	ENST00000253458		ChiTaRS3.1			AB208969	TRIM58	chr1	248028055	+	GSE1	chr16	85690882	+
Frame-shit	ENST00000366481	ENST00000393243		ChiTaRS3.1			AB208969	TRIM58	chr1	248028055	+	GSE1	chr16	85690882	+
5CDS-intron	ENST00000366481	ENST00000471070		ChiTaRS3.1			AB208969	TRIM58	chr1	248028055	+	GSE1	chr16	85690882	+
Frame-shit	ENST00000414242	ENST00000414242		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
Frame-shit	ENST00000414242	ENST00000361479		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
5CDS-intron	ENST00000414242	ENST00000496525		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
Frame-shit	ENST00000361479	ENST00000414242		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
Frame-shit	ENST00000361479	ENST00000361479		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
5CDS-intron	ENST00000361479	ENST00000496525		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
intron-3CDS	ENST00000496525	ENST00000414242		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
intron-3CDS	ENST00000496525	ENST00000361479		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
intron-intron	ENST00000496525	ENST00000496525		ChiTaRS3.1			BI858901	MPHOSPH8	chr13	20224401	+	MPHOSPH8	chr13	20216252	+
5CDS-intron	ENST00000438423	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000438423	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000438423	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000438423	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000438423	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000267811	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000267811	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000267811	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000267811	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000452095	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000452095	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000452095	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000452095	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000333725	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000333725	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000333725	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000333725	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000557843	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000557843	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-5UTR	ENST00000557843	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000557843	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000560764	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000560764	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000560764	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000560764	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000543579	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000543579	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000543579	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000543579	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000537840	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000537840	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000537840	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000537840	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000343827	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000343827	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000343827	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000343827	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000559710	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000559710	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000559710	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559710	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000376177		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000396172		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000417556		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000458640		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000462421		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000415382		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000453105		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000449074		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000552820		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000463430		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000438578		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000559703	ENST00000415689		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000559703	ENST00000456476		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-5UTR	ENST00000559703	ENST00000412106		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000547039		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000550435		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000453488		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000453138		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000552288		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000441425		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000456666		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000546633		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000483957		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000430703		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000416863		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000413678		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000414440		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000547489		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000551031		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000468089		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000400293		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000400296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000400295		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000383508		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000548340		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000548331		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000495391		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000446341		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000548614		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000448296		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000412330		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000445218		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000546637		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000489325		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000450987		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000431360		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000430784		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000550217		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000470514		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
intron-intron	ENST00000559703	ENST00000549374		ChiTaRS3.1			DB247200	TCF12	chr15	57213287	+	DDX39B	chr6	3019438	-
5CDS-intron	ENST00000392935	ENST00000477087		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-3UTR	ENST00000392935	ENST00000228872		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-intron	ENST00000392935	ENST00000396340		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
intron-intron	ENST00000522572	ENST00000477087		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
intron-3UTR	ENST00000522572	ENST00000228872		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
intron-intron	ENST00000522572	ENST00000396340		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-intron	ENST00000521158	ENST00000477087		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-3UTR	ENST00000521158	ENST00000228872		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-intron	ENST00000521158	ENST00000396340		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-intron	ENST00000022615	ENST00000477087		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-3UTR	ENST00000022615	ENST00000228872		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
5CDS-intron	ENST00000022615	ENST00000396340		ChiTaRS3.1			BE733709	VDAC3	chr8	42259537	+	CDKN1B	chr12	12875241	+
intron-3UTR	ENST00000305786	ENST00000381346		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000305786	ENST00000553384		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-intron	ENST00000305786	ENST00000428130		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409409	ENST00000381346		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409409	ENST00000553384		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-intron	ENST00000409409	ENST00000428130		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409764	ENST00000381346		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-3UTR	ENST00000409764	ENST00000553384		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
intron-intron	ENST00000409764	ENST00000428130		ChiTaRS3.1			AI928208	CYCS	chr7	25162745	+	RDH11	chr14	68144286	+
Frame-shit	ENST00000561500	ENST00000358746		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
5CDS-intron	ENST00000561500	ENST00000515176		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
Frame-shit	ENST00000379047	ENST00000358746		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
5CDS-intron	ENST00000379047	ENST00000515176		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
Frame-shit	ENST00000320623	ENST00000358746		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
5CDS-intron	ENST00000320623	ENST00000515176		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
Frame-shit	ENST00000379046	ENST00000358746		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
5CDS-intron	ENST00000379046	ENST00000515176		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
Frame-shit	ENST00000439109	ENST00000358746		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
5CDS-intron	ENST00000439109	ENST00000515176		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
intron-3CDS	ENST00000564043	ENST00000358746		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
intron-intron	ENST00000564043	ENST00000515176		ChiTaRS3.1			BM755010	NQO1	chr16	69760336	-	TTC37	chr5	94820550	-
intron-3CDS	ENST00000229238	ENST00000262554		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-5UTR	ENST00000229238	ENST00000482632		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-intron	ENST00000229238	ENST00000337841		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-3CDS	ENST00000543164	ENST00000262554		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-5UTR	ENST00000543164	ENST00000482632		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-intron	ENST00000543164	ENST00000337841		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-3CDS	ENST00000543703	ENST00000262554		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-5UTR	ENST00000543703	ENST00000482632		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
intron-intron	ENST00000543703	ENST00000337841		ChiTaRS3.1			DA774691	MRPL51	chr12	6601611	-	SPTLC1	chr9	94830350	-
Frame-shit	ENST00000291458	ENST00000361654		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000291458	ENST00000545889		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000291458	ENST00000302528		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000291458	ENST00000358808		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000291458	ENST00000537178		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000291458	ENST00000540338		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
In-frame	ENST00000291458	ENST00000536634		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
5CDS-intron	ENST00000291458	ENST00000540539		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000361654		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000545889		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000302528		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000358808		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000537178		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000540338		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000497726	ENST00000536634		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-intron	ENST00000497726	ENST00000540539		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000361654		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000545889		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000302528		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000358808		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000537178		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000540338		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-3CDS	ENST00000466854	ENST00000536634		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
intron-intron	ENST00000466854	ENST00000540539		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000479899	ENST00000361654		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000479899	ENST00000545889		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000479899	ENST00000302528		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000479899	ENST00000358808		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000479899	ENST00000537178		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
Frame-shit	ENST00000479899	ENST00000540338		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
In-frame	ENST00000479899	ENST00000536634		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
5CDS-intron	ENST00000479899	ENST00000540539		ChiTaRS3.1			DA257036	CCDC58	chr3	122087023	-	CLIP1	chr12	122763694	-
3UTR-5UTR	ENST00000423278	ENST00000566620		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000268613		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000565636		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000431540		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000428848		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000567445		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000446376		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000569454		ChiTaRS3.1			U59289	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
Frame-shit	ENST00000358791	ENST00000589222		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000407086		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000390652		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000408905		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588462		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000585744		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000358791	ENST00000588874		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000358791	ENST00000585812		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000589222		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000407086		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000390652		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000408905		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588462		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000585744		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000262591	ENST00000588874		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000262591	ENST00000585812		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000589222		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000407086		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000390652		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000408905		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588462		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000585744		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000371608	ENST00000588874		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000371608	ENST00000585812		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000589222		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000407086		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000390652		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000408905		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588462		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000585744		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
Frame-shit	ENST00000609336	ENST00000588874		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
5CDS-3UTR	ENST00000609336	ENST00000585812		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000589222		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000407086		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000390652		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000408905		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588462		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000585744		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000485049	ENST00000588874		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3UTR	ENST00000485049	ENST00000585812		ChiTaRS3.1			BU957509	BCAS4	chr20	49411713	+	BCAS3	chr17	59445686	+
3UTR-3CDS	ENST00000341259	ENST00000334186		ChiTaRS3.1			BQ300070	SH2B3	chr12	111888823	+	PPFIA3	chr19	49652402	+
3UTR-3CDS	ENST00000341259	ENST00000602351		ChiTaRS3.1			BQ300070	SH2B3	chr12	111888823	+	PPFIA3	chr19	49652402	+
intron-3CDS	ENST00000538307	ENST00000334186		ChiTaRS3.1			BQ300070	SH2B3	chr12	111888823	+	PPFIA3	chr19	49652402	+
intron-3CDS	ENST00000538307	ENST00000602351		ChiTaRS3.1			BQ300070	SH2B3	chr12	111888823	+	PPFIA3	chr19	49652402	+
intron-3CDS	ENST00000541742	ENST00000272227		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000541742	ENST00000404371		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000541742	ENST00000404824		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000541742	ENST00000540494		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000541742	ENST00000381611		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-intron	ENST00000541742	ENST00000489662		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000490107	ENST00000272227		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000490107	ENST00000404371		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000490107	ENST00000404824		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000490107	ENST00000540494		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000490107	ENST00000381611		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-intron	ENST00000490107	ENST00000489662		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000388985	ENST00000272227		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000388985	ENST00000404371		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000388985	ENST00000404824		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000388985	ENST00000540494		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000388985	ENST00000381611		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-intron	ENST00000388985	ENST00000489662		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000366517	ENST00000272227		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000366517	ENST00000404371		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000366517	ENST00000404824		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000366517	ENST00000540494		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000366517	ENST00000381611		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-intron	ENST00000366517	ENST00000489662		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000403792	ENST00000272227		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000403792	ENST00000404371		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000403792	ENST00000404824		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000403792	ENST00000540494		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-3CDS	ENST00000403792	ENST00000381611		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
intron-intron	ENST00000403792	ENST00000489662		ChiTaRS3.1			BE837655	SMYD3	chr1	246199162	-	PDIA6	chr2	10929967	-
Frame-shit	ENST00000381166	ENST00000403829		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000298687		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000350792		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397858		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000554104		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000555158		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000553503		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397853		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000360463		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000556147		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397856		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397855		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000554143		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397851		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397847		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000298684		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000381166	ENST00000397844		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
5CDS-5UTR	ENST00000381166	ENST00000554277		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000403829		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000298687		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000350792		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397858		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000554104		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000555158		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000553503		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397853		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000360463		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000556147		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397856		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397855		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000554143		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397851		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397847		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000298684		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000427855	ENST00000397844		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
5CDS-5UTR	ENST00000427855	ENST00000554277		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000403829		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000298687		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000350792		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397858		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000554104		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000555158		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000553503		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397853		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000360463		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000556147		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397856		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397855		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000554143		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397851		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397847		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000298684		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000340738	ENST00000397844		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-5UTR	ENST00000340738	ENST00000554277		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000403829		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000298687		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000350792		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397858		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000554104		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000555158		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000553503		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397853		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000360463		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000556147		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397856		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397855		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000554143		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397851		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397847		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000298684		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000554301	ENST00000397844		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
5CDS-5UTR	ENST00000554301	ENST00000554277		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000403829		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000298687		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000350792		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397858		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000554104		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000555158		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000553503		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397853		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000360463		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000556147		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397856		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397855		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000554143		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397851		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397847		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000298684		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
Frame-shit	ENST00000555445	ENST00000397844		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
5CDS-5UTR	ENST00000555445	ENST00000554277		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000403829		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000298687		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000350792		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397858		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000554104		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000555158		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000553503		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397853		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000360463		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000556147		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397856		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397855		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000554143		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397851		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397847		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000298684		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-3CDS	ENST00000554314	ENST00000397844		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-5UTR	ENST00000554314	ENST00000554277		ChiTaRS3.1			AK098388	PAPLN	chr14	73718266	+	NDRG2	chr14	21487904	-
intron-intron	ENST00000314117	ENST00000434753		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-intron	ENST00000314117	ENST00000468691		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-3UTR	ENST00000314117	ENST00000371199		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-3UTR	ENST00000314117	ENST00000355640		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-intron	ENST00000454158	ENST00000434753		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-intron	ENST00000454158	ENST00000468691		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-3UTR	ENST00000454158	ENST00000371199		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
intron-3UTR	ENST00000454158	ENST00000355640		ChiTaRS3.1			BM690816	RELL1	chr4	37612256	-	XIAP	chrX	123046191	+
5CDS-3UTR	ENST00000545606	ENST00000377648		ChiTaRS3.1			AK074922	CAND1	chr12	67703949	+	PHF13	chr1	6683966	+
5CDS-intron	ENST00000545606	ENST00000495385		ChiTaRS3.1			AK074922	CAND1	chr12	67703949	+	PHF13	chr1	6683966	+
intron-3UTR	ENST00000539109	ENST00000377648		ChiTaRS3.1			AK074922	CAND1	chr12	67703949	+	PHF13	chr1	6683966	+
intron-intron	ENST00000539109	ENST00000495385		ChiTaRS3.1			AK074922	CAND1	chr12	67703949	+	PHF13	chr1	6683966	+
intron-3UTR	ENST00000586683	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000586683	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000252445	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000252445	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000587806	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000587806	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000589171	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000589171	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000591674	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000591674	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000586120	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000586120	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000590700	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000590700	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000591912	ENST00000320389		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000591912	ENST00000498729		ChiTaRS3.1			BP229722	ELOF1	chr19	11664546	-	KIF1A	chr2	241656267	-
intron-3UTR	ENST00000440909	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000440909	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000440909	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000440909	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000448921	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000448921	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000448921	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000448921	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000437397	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000437397	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000437397	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000437397	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000355814	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000355814	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000355814	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000355814	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000393087	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000393087	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000393087	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000393087	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000393088	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000393088	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000393088	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000393088	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000404814	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000404814	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000404814	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000404814	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000449399	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000449399	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000449399	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000449399	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000402629	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000402629	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000402629	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000402629	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000555289	ENST00000361236		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000555289	ENST00000398136		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000555289	ENST00000532161		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-intron	ENST00000555289	ENST00000525577		ChiTaRS3.1			BF733145	SERPINA1	chr14	94849008	-	TMEM123	chr11	102267460	-
intron-3UTR	ENST00000309311	ENST00000356607		ChiTaRS3.1			AW874543	EEF2	chr19	3976308	+	PEX14	chr1	10690464	-
intron-intron	ENST00000309311	ENST00000538836		ChiTaRS3.1			AW874543	EEF2	chr19	3976308	+	PEX14	chr1	10690464	-
intron-intron	ENST00000309311	ENST00000492696		ChiTaRS3.1			AW874543	EEF2	chr19	3976308	+	PEX14	chr1	10690464	-
intron-3UTR	ENST00000600720	ENST00000356607		ChiTaRS3.1			AW874543	EEF2	chr19	3976308	+	PEX14	chr1	10690464	-
intron-intron	ENST00000600720	ENST00000538836		ChiTaRS3.1			AW874543	EEF2	chr19	3976308	+	PEX14	chr1	10690464	-
intron-intron	ENST00000600720	ENST00000492696		ChiTaRS3.1			AW874543	EEF2	chr19	3976308	+	PEX14	chr1	10690464	-
In-frame	ENST00000327877	ENST00000285093		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
In-frame	ENST00000327877	ENST00000589432		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
In-frame	ENST00000327877	ENST00000587994		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5UTR-3CDS	ENST00000378426	ENST00000285093		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5UTR-3CDS	ENST00000378426	ENST00000589432		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5UTR-3CDS	ENST00000378426	ENST00000587994		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5UTR-3CDS	ENST00000378421	ENST00000285093		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5UTR-3CDS	ENST00000378421	ENST00000589432		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5UTR-3CDS	ENST00000378421	ENST00000587994		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
intron-3CDS	ENST00000440784	ENST00000285093		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
intron-3CDS	ENST00000440784	ENST00000589432		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
intron-3CDS	ENST00000440784	ENST00000587994		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
In-frame	ENST00000378418	ENST00000285093		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
In-frame	ENST00000378418	ENST00000589432		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
In-frame	ENST00000378418	ENST00000587994		ChiTaRS3.1			DA908810	CXorf38	chrX	40506259	-	ACAA2	chr18	47323966	-
5CDS-intron	ENST00000344824	ENST00000389048		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000344824	ENST00000431873		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000344824	ENST00000498037		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000538887	ENST00000389048		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000538887	ENST00000431873		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000538887	ENST00000498037		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000300933	ENST00000389048		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000300933	ENST00000431873		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
5CDS-intron	ENST00000300933	ENST00000498037		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
3UTR-intron	ENST00000591645	ENST00000389048		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
3UTR-intron	ENST00000591645	ENST00000431873		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
3UTR-intron	ENST00000591645	ENST00000498037		ChiTaRS3.1			AF186110	TPM4	chr19	16204563	+	ALK	chr2	29446402	-
intron-3CDS	ENST00000280187	ENST00000358602		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000280187	ENST00000509867		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000280187	ENST00000330838		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000280187	ENST00000514252		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000393658	ENST00000358602		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000393658	ENST00000509867		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000393658	ENST00000330838		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000393658	ENST00000514252		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506894	ENST00000358602		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506894	ENST00000509867		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000506894	ENST00000330838		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000506894	ENST00000514252		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000515090	ENST00000358602		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000515090	ENST00000509867		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000515090	ENST00000330838		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000515090	ENST00000514252		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506219	ENST00000358602		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000506219	ENST00000509867		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-intron	ENST00000506219	ENST00000330838		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-5UTR	ENST00000506219	ENST00000514252		ChiTaRS3.1			AW957350	GPM6A	chr4	176561299	-	ANKRD17	chr4	74005342	-
intron-3CDS	ENST00000410042	ENST00000548567		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000410042	ENST00000351328		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000410042	ENST00000542324		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
3UTR-3CDS	ENST00000338148	ENST00000548567		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
3UTR-3CDS	ENST00000338148	ENST00000351328		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
3UTR-3CDS	ENST00000338148	ENST00000542324		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000409145	ENST00000548567		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000409145	ENST00000351328		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000409145	ENST00000542324		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000465432	ENST00000548567		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000465432	ENST00000351328		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000465432	ENST00000542324		ChiTaRS3.1			BM766816	MRPL30	chr2	99814077	+	CS	chr12	56667569	-
intron-3CDS	ENST00000550241	ENST00000354185		ChiTaRS3.1			BQ008586	ATP5G2	chr12	54063120	+	DDX21	chr10	70742344	-
intron-3CDS	ENST00000602871	ENST00000354185		ChiTaRS3.1			BQ008586	ATP5G2	chr12	54063120	+	DDX21	chr10	70742344	-
intron-3CDS	ENST00000394349	ENST00000354185		ChiTaRS3.1			BQ008586	ATP5G2	chr12	54063120	+	DDX21	chr10	70742344	-
intron-3CDS	ENST00000549164	ENST00000354185		ChiTaRS3.1			BQ008586	ATP5G2	chr12	54063120	+	DDX21	chr10	70742344	-
intron-3CDS	ENST00000338662	ENST00000354185		ChiTaRS3.1			BQ008586	ATP5G2	chr12	54063120	+	DDX21	chr10	70742344	-
intron-3CDS	ENST00000359156	ENST00000299698		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000359156	ENST00000539547		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-intron	ENST00000359156	ENST00000540049		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000541972	ENST00000299698		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000541972	ENST00000539547		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-intron	ENST00000541972	ENST00000540049		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000396620	ENST00000299698		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000396620	ENST00000539547		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-intron	ENST00000396620	ENST00000540049		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000432237	ENST00000299698		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000432237	ENST00000539547		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-intron	ENST00000432237	ENST00000540049		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000539632	ENST00000299698		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-3CDS	ENST00000539632	ENST00000539547		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
intron-intron	ENST00000539632	ENST00000540049		ChiTaRS3.1			BF088823	CD163	chr12	7649450	-	A2ML1	chr12	9010636	+
5CDS-3UTR	ENST00000301740	ENST00000383729		ChiTaRS3.1			AV727990	SRRM2	chr16	2812754	+	P4HTM	chr3	49044474	+
5CDS-3UTR	ENST00000301740	ENST00000343546		ChiTaRS3.1			AV727990	SRRM2	chr16	2812754	+	P4HTM	chr3	49044474	+
5CDS-intron	ENST00000301740	ENST00000609406		ChiTaRS3.1			AV727990	SRRM2	chr16	2812754	+	P4HTM	chr3	49044474	+
intron-3UTR	ENST00000574593	ENST00000383729		ChiTaRS3.1			AV727990	SRRM2	chr16	2812754	+	P4HTM	chr3	49044474	+
intron-3UTR	ENST00000574593	ENST00000343546		ChiTaRS3.1			AV727990	SRRM2	chr16	2812754	+	P4HTM	chr3	49044474	+
intron-intron	ENST00000574593	ENST00000609406		ChiTaRS3.1			AV727990	SRRM2	chr16	2812754	+	P4HTM	chr3	49044474	+
3UTR-3CDS	ENST00000405508	ENST00000460680		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
3UTR-3CDS	ENST00000405508	ENST00000296288		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
3UTR-3CDS	ENST00000262709	ENST00000460680		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
3UTR-3CDS	ENST00000262709	ENST00000296288		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
intron-3CDS	ENST00000448790	ENST00000460680		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
intron-3CDS	ENST00000448790	ENST00000296288		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
intron-3CDS	ENST00000494242	ENST00000460680		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
intron-3CDS	ENST00000494242	ENST00000296288		ChiTaRS3.1			CA437449	TOX4	chr14	21967264	-	BAP1	chr3	52438507	+
intron-5UTR	ENST00000038176	ENST00000311672		ChiTaRS3.1			AK304884	NSMAF	chr8	59514057	-	UQCRH	chr1	46769392	+
intron-3UTR	ENST00000038176	ENST00000486951		ChiTaRS3.1			AK304884	NSMAF	chr8	59514057	-	UQCRH	chr1	46769392	+
intron-5UTR	ENST00000427130	ENST00000311672		ChiTaRS3.1			AK304884	NSMAF	chr8	59514057	-	UQCRH	chr1	46769392	+
intron-3UTR	ENST00000427130	ENST00000486951		ChiTaRS3.1			AK304884	NSMAF	chr8	59514057	-	UQCRH	chr1	46769392	+
intron-5UTR	ENST00000519858	ENST00000311672		ChiTaRS3.1			AK304884	NSMAF	chr8	59514057	-	UQCRH	chr1	46769392	+
intron-3UTR	ENST00000519858	ENST00000486951		ChiTaRS3.1			AK304884	NSMAF	chr8	59514057	-	UQCRH	chr1	46769392	+
3UTR-3CDS	ENST00000515137	ENST00000340385		ChiTaRS3.1			BG208010	MGST2	chr4	140661422	+	PRDX6	chr1	173450488	+
3UTR-3UTR	ENST00000515137	ENST00000470017		ChiTaRS3.1			BG208010	MGST2	chr4	140661422	+	PRDX6	chr1	173450488	+
intron-3CDS	ENST00000265498	ENST00000340385		ChiTaRS3.1			BG208010	MGST2	chr4	140661422	+	PRDX6	chr1	173450488	+
intron-3UTR	ENST00000265498	ENST00000470017		ChiTaRS3.1			BG208010	MGST2	chr4	140661422	+	PRDX6	chr1	173450488	+
intron-3CDS	ENST00000506797	ENST00000340385		ChiTaRS3.1			BG208010	MGST2	chr4	140661422	+	PRDX6	chr1	173450488	+
intron-3UTR	ENST00000506797	ENST00000470017		ChiTaRS3.1			BG208010	MGST2	chr4	140661422	+	PRDX6	chr1	173450488	+
intron-3CDS	ENST00000347401	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000347401	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000347401	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000347401	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000347401	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000353578	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000353578	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000353578	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000353578	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000353578	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000295550	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000295550	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000295550	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000295550	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000295550	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000472056	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000472056	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000472056	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000472056	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000472056	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000409809	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000409809	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000409809	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000409809	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000409809	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000346358	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000346358	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000346358	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000346358	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000346358	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392004	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392004	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392004	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392004	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000392004	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392003	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392003	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392003	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000392003	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000392003	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000473258	ENST00000555699		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000473258	ENST00000334869		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000473258	ENST00000557434		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-3CDS	ENST00000473258	ENST00000393218		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
intron-intron	ENST00000473258	ENST00000557034		ChiTaRS3.1			AW450755	COL6A3	chr2	238232742	+	LGMN	chr14	93178236	+
Frame-shit	ENST00000593149	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000593149	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000593149	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
5CDS-intron	ENST00000593149	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000248342	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000248342	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000248342	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
5CDS-intron	ENST00000248342	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-3CDS	ENST00000593062	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-3CDS	ENST00000593062	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-3CDS	ENST00000593062	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-intron	ENST00000593062	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000538434	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000538434	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000538434	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
5CDS-intron	ENST00000538434	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-3CDS	ENST00000588934	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-3CDS	ENST00000588934	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-3CDS	ENST00000588934	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
intron-intron	ENST00000588934	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
In-frame	ENST00000545173	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
In-frame	ENST00000545173	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
In-frame	ENST00000545173	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
5CDS-intron	ENST00000545173	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000592558	ENST00000373316		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000592558	ENST00000442431		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
Frame-shit	ENST00000592558	ENST00000537456		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
5CDS-intron	ENST00000592558	ENST00000476531		ChiTaRS3.1			AW084209	EIF3K	chr19	39125704	-	PGK1	chrX	77378728	-
In-frame	ENST00000324932	ENST00000243056		ChiTaRS3.1			AJ438986	NUP98	chr11	3744387	-	HOXC13	chr12	54338780	+
Frame-shit	ENST00000359171	ENST00000243056		ChiTaRS3.1			AJ438986	NUP98	chr11	3744387	-	HOXC13	chr12	54338780	+
In-frame	ENST00000355260	ENST00000243056		ChiTaRS3.1			AJ438986	NUP98	chr11	3744387	-	HOXC13	chr12	54338780	+
In-frame	ENST00000397004	ENST00000243056		ChiTaRS3.1			AJ438986	NUP98	chr11	3744387	-	HOXC13	chr12	54338780	+
In-frame	ENST00000397007	ENST00000243056		ChiTaRS3.1			AJ438986	NUP98	chr11	3744387	-	HOXC13	chr12	54338780	+
intron-3CDS	ENST00000488828	ENST00000243056		ChiTaRS3.1			AJ438986	NUP98	chr11	3744387	-	HOXC13	chr12	54338780	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			AW993963	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
Frame-shit	ENST00000373585	ENST00000392587		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
Frame-shit	ENST00000373585	ENST00000392586		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
Frame-shit	ENST00000373585	ENST00000392588		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
Frame-shit	ENST00000373585	ENST00000392589		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
Frame-shit	ENST00000373585	ENST00000359451		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
intron-3CDS	ENST00000466265	ENST00000392587		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
intron-3CDS	ENST00000466265	ENST00000392586		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
intron-3CDS	ENST00000466265	ENST00000392588		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
intron-3CDS	ENST00000466265	ENST00000392589		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
intron-3CDS	ENST00000466265	ENST00000359451		ChiTaRS3.1			AK056044	DDX50	chr10	70672986	+	WASF1	chr6	110422924	-
intron-3UTR	ENST00000239231	ENST00000297578		ChiTaRS3.1			BG776605	PANK3	chr5	167984145	-	SLC25A32	chr8	104411861	-
intron-intron	ENST00000239231	ENST00000543107		ChiTaRS3.1			BG776605	PANK3	chr5	167984145	-	SLC25A32	chr8	104411861	-
intron-intron	ENST00000239231	ENST00000523701		ChiTaRS3.1			BG776605	PANK3	chr5	167984145	-	SLC25A32	chr8	104411861	-
intron-3UTR	ENST00000520504	ENST00000297578		ChiTaRS3.1			BG776605	PANK3	chr5	167984145	-	SLC25A32	chr8	104411861	-
intron-intron	ENST00000520504	ENST00000543107		ChiTaRS3.1			BG776605	PANK3	chr5	167984145	-	SLC25A32	chr8	104411861	-
intron-intron	ENST00000520504	ENST00000523701		ChiTaRS3.1			BG776605	PANK3	chr5	167984145	-	SLC25A32	chr8	104411861	-
intron-3CDS	ENST00000393701	ENST00000404816		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000354476		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000390003		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000418533		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000402934		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000404525		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000407925		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000393701	ENST00000272273		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000393701	ENST00000498013		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000404816		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000354476		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000390003		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000418533		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000402934		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000404525		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000407925		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000568461	ENST00000272273		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000568461	ENST00000498013		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000404816		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000354476		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000390003		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000418533		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000402934		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000404525		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000407925		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000288040	ENST00000272273		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000288040	ENST00000498013		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000404816		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000354476		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000390003		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000418533		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000402934		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000404525		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000407925		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3CDS	ENST00000449317	ENST00000272273		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-3UTR	ENST00000449317	ENST00000498013		ChiTaRS3.1			BC051464	CLEC18A	chr16	70058528	-	LTBP1	chr2	33525516	+
intron-intron	ENST00000217131	ENST00000375784		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000375779		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000375780		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000395892		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000457485		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000423804		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000447369		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000447338		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000422167		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000438708		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000431921		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000415179		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000418285		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000423055		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000442045		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000435242		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000400052		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000383404		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000383405		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000400058		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000456863		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000434202		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000420458		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000433916		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000425464		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000423143		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000438750		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-intron	ENST00000217131	ENST00000451546		ChiTaRS3.1			CA309759	CTSZ	chr20	57570433	+	CLIC1	chr6	3030825	+
intron-5UTR	ENST00000375643	ENST00000237014		ChiTaRS3.1			CB999552	IARS	chr9	95050439	-	TTR	chr18	29171840	+
intron-5UTR	ENST00000375629	ENST00000237014		ChiTaRS3.1			CB999552	IARS	chr9	95050439	-	TTR	chr18	29171840	+
intron-5UTR	ENST00000443024	ENST00000237014		ChiTaRS3.1			CB999552	IARS	chr9	95050439	-	TTR	chr18	29171840	+
intron-5UTR	ENST00000447699	ENST00000237014		ChiTaRS3.1			CB999552	IARS	chr9	95050439	-	TTR	chr18	29171840	+
intron-5UTR	ENST00000375627	ENST00000237014		ChiTaRS3.1			CB999552	IARS	chr9	95050439	-	TTR	chr18	29171840	+
intron-5UTR	ENST00000474340	ENST00000237014		ChiTaRS3.1			CB999552	IARS	chr9	95050439	-	TTR	chr18	29171840	+
intron-3CDS	ENST00000329251	ENST00000329251		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-3CDS	ENST00000329251	ENST00000378019		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-5UTR	ENST00000329251	ENST00000532986		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-3CDS	ENST00000378019	ENST00000329251		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-3CDS	ENST00000378019	ENST00000378019		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-5UTR	ENST00000378019	ENST00000532986		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-3CDS	ENST00000532986	ENST00000329251		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-3CDS	ENST00000532986	ENST00000378019		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-5UTR	ENST00000532986	ENST00000532986		ChiTaRS3.1			BI046948	EEF1G	chr11	62334929	-	EEF1G	chr11	62339115	-
intron-3UTR	ENST00000519716	ENST00000254806		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000519716	ENST00000585462		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000519716	ENST00000591399		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000519716	ENST00000590221		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000519716	ENST00000344296		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000519716	ENST00000433525		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000519716	ENST00000590450		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000252773	ENST00000254806		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000252773	ENST00000585462		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000252773	ENST00000591399		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000252773	ENST00000590221		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000252773	ENST00000344296		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000252773	ENST00000433525		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000252773	ENST00000590450		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000428389	ENST00000254806		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000428389	ENST00000585462		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000428389	ENST00000591399		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000428389	ENST00000590221		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000428389	ENST00000344296		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000428389	ENST00000433525		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000428389	ENST00000590450		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000551649	ENST00000254806		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000551649	ENST00000585462		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000551649	ENST00000591399		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000551649	ENST00000590221		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000551649	ENST00000344296		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000551649	ENST00000433525		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000551649	ENST00000590450		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000552293	ENST00000254806		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000552293	ENST00000585462		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000552293	ENST00000591399		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000552293	ENST00000590221		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000552293	ENST00000344296		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000552293	ENST00000433525		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000552293	ENST00000590450		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000550896	ENST00000254806		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000550896	ENST00000585462		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000550896	ENST00000591399		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-3UTR	ENST00000550896	ENST00000590221		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000550896	ENST00000344296		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000550896	ENST00000433525		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
intron-intron	ENST00000550896	ENST00000590450		ChiTaRS3.1			AK127106	UNC13A	chr19	17728616	-	WBP2	chr17	73842294	-
In-frame	ENST00000486715	ENST00000357248		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000486715	ENST00000349721		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000486715	ENST00000382203		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000486715	ENST00000382194		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000486715	ENST00000491574		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000486715	ENST00000324954		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000486715	ENST00000302401		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000486715	ENST00000382186		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000486715	ENST00000382185		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000478576	ENST00000357248		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000478576	ENST00000349721		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000478576	ENST00000382203		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000478576	ENST00000382194		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000478576	ENST00000491574		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000478576	ENST00000324954		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000478576	ENST00000302401		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000478576	ENST00000382186		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000478576	ENST00000382185		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000264263	ENST00000357248		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000264263	ENST00000349721		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000264263	ENST00000382203		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
In-frame	ENST00000264263	ENST00000382194		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000264263	ENST00000491574		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000264263	ENST00000324954		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000264263	ENST00000302401		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000264263	ENST00000382186		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
5CDS-intron	ENST00000264263	ENST00000382185		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-3CDS	ENST00000490261	ENST00000357248		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-3CDS	ENST00000490261	ENST00000349721		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-3CDS	ENST00000490261	ENST00000382203		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-3CDS	ENST00000490261	ENST00000382194		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-intron	ENST00000490261	ENST00000491574		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-intron	ENST00000490261	ENST00000324954		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-intron	ENST00000490261	ENST00000302401		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-intron	ENST00000490261	ENST00000382186		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-intron	ENST00000490261	ENST00000382185		ChiTaRS3.1			DA528491	GFM1	chr3	158362483	+	SMARCA2	chr9	2086981	+
intron-3UTR	ENST00000458013	ENST00000372447		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
intron-intron	ENST00000458013	ENST00000461762		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
3UTR-3UTR	ENST00000368843	ENST00000372447		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
3UTR-intron	ENST00000368843	ENST00000461762		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
intron-3UTR	ENST00000368838	ENST00000372447		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
intron-intron	ENST00000368838	ENST00000461762		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
intron-3UTR	ENST00000482791	ENST00000372447		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
intron-intron	ENST00000482791	ENST00000461762		ChiTaRS3.1			BC051817	SNX27	chr1	151666487	+	C9orf78	chr9	132590182	-
intron-3CDS	ENST00000376630	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000376630	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000376630	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-intron	ENST00000376630	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000415649	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000415649	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000415649	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-intron	ENST00000415649	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000415289	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000415289	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000415289	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-intron	ENST00000415289	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000444683	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000444683	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000444683	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-intron	ENST00000444683	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000383597	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000383597	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000383597	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-intron	ENST00000383597	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000425603	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000425603	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3CDS	ENST00000425603	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-intron	ENST00000425603	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
In-frame	ENST00000427936	ENST00000499810		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
In-frame	ENST00000427936	ENST00000360541		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
In-frame	ENST00000427936	ENST00000503014		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
5CDS-intron	ENST00000427936	ENST00000514005		ChiTaRS3.1			BG534374	HLA-E	chr6	1789963	+	ETF1	chr5	137848637	-
intron-3UTR	ENST00000393562	ENST00000413366		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-intron	ENST00000393562	ENST00000583361		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-3UTR	ENST00000369620	ENST00000413366		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-intron	ENST00000369620	ENST00000583361		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-3UTR	ENST00000393564	ENST00000413366		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-intron	ENST00000393564	ENST00000583361		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-3UTR	ENST00000497281	ENST00000413366		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-intron	ENST00000497281	ENST00000583361		ChiTaRS3.1			M12996	G6PD	chrX	153759627	-	PRKCA	chr17	64806066	+
intron-intron	ENST00000521861	ENST00000397002		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000521861	ENST00000561028		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000521861	ENST00000396997		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000521861	ENST00000560550		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000521861	ENST00000396995		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000276682	ENST00000397002		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000276682	ENST00000561028		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000276682	ENST00000396997		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000276682	ENST00000560550		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-intron	ENST00000276682	ENST00000396995		ChiTaRS3.1			AI861912	EIF3H	chr8	117657177	+	NRL	chr14	24584383	-
intron-3UTR	ENST00000313899	ENST00000262809		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-intron	ENST00000313899	ENST00000596124		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-3UTR	ENST00000353341	ENST00000262809		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-intron	ENST00000353341	ENST00000596124		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-3UTR	ENST00000543098	ENST00000262809		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-intron	ENST00000543098	ENST00000596124		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-3UTR	ENST00000352301	ENST00000262809		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-intron	ENST00000352301	ENST00000596124		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-3UTR	ENST00000508119	ENST00000262809		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-intron	ENST00000508119	ENST00000596124		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-3UTR	ENST00000541060	ENST00000262809		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
intron-intron	ENST00000541060	ENST00000596124		ChiTaRS3.1			DB050538	HNRNPD	chr4	83295053	-	ELL	chr19	18555299	-
5CDS-intron	ENST00000200453	ENST00000375651		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000458062		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000608703		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000430065		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000422919		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000441618		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000449876		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000433487		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000452298		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000400040		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
5CDS-intron	ENST00000200453	ENST00000383389		ChiTaRS3.1			AV701720	PPP1R15A	chr19	49379000	+	HSPA1A	chr6	3079053	+
intron-3CDS	ENST00000300584	ENST00000371399		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000072644		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000300584	ENST00000539954		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000300584	ENST00000469457		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000371399		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000072644		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000409931	ENST00000539954		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000409931	ENST00000469457		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000371399		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000072644		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-3CDS	ENST00000492078	ENST00000539954		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-5UTR	ENST00000492078	ENST00000469457		ChiTaRS3.1			BQ930999	TBC1D2B	chr15	78309023	-	YIPF1	chr1	54331905	-
intron-intron	ENST00000284727	ENST00000424834		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000284727	ENST00000382108		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000284727	ENST00000382095		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000284727	ENST00000474317		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000284727	ENST00000399949		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000284727	ENST00000409126		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000284727	ENST00000343003		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000424834		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000382108		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000382095		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000474317		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000399949		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000409126		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000409194	ENST00000343003		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000424834		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000382108		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000382095		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000474317		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000399949		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000409126		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
intron-intron	ENST00000392541	ENST00000343003		ChiTaRS3.1			CN480751	ATP5G3	chr2	176043044	+	SPATA13	chr13	24863310	-
Frame-shit	ENST00000418929	ENST00000252891		ChiTaRS3.1			BC001794	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-intron	ENST00000418929	ENST00000598779		ChiTaRS3.1			BC001794	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-intron	ENST00000418929	ENST00000540131		ChiTaRS3.1			BC001794	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
5CDS-5UTR	ENST00000418929	ENST00000599594		ChiTaRS3.1			BC001794	PRR12	chr19	50094998	+	NUMBL	chr19	41192902	-
intron-3UTR	ENST00000579820	ENST00000372621		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000579820	ENST00000541520		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000579820	ENST00000475060		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000579820	ENST00000543104		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000579820	ENST00000372616		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-3UTR	ENST00000318240	ENST00000372621		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000318240	ENST00000541520		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000318240	ENST00000475060		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000318240	ENST00000543104		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000318240	ENST00000372616		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-3UTR	ENST00000582392	ENST00000372621		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000582392	ENST00000541520		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000582392	ENST00000475060		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000582392	ENST00000543104		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
intron-intron	ENST00000582392	ENST00000372616		ChiTaRS3.1			AA044840	C18orf32	chr18	47008653	-	CTPS1	chr1	41478084	+
5CDS-intron	ENST00000225792	ENST00000390394		ChiTaRS3.1			DB152516	DDX5	chr17	62500340	-	TRBV20-1	chr16	2105413	+
intron-intron	ENST00000450599	ENST00000390394		ChiTaRS3.1			DB152516	DDX5	chr17	62500340	-	TRBV20-1	chr16	2105413	+
5CDS-intron	ENST00000578804	ENST00000390394		ChiTaRS3.1			DB152516	DDX5	chr17	62500340	-	TRBV20-1	chr16	2105413	+
intron-intron	ENST00000580026	ENST00000390394		ChiTaRS3.1			DB152516	DDX5	chr17	62500340	-	TRBV20-1	chr16	2105413	+
intron-intron	ENST00000265689	ENST00000304979		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000265689	ENST00000372550		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000265689	ENST00000372549		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-3UTR	ENST00000265689	ENST00000455203		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000533728	ENST00000304979		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000533728	ENST00000372550		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000533728	ENST00000372549		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-3UTR	ENST00000533728	ENST00000455203		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000356135	ENST00000304979		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000356135	ENST00000372550		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-intron	ENST00000356135	ENST00000372549		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-3UTR	ENST00000356135	ENST00000455203		ChiTaRS3.1			BP367834	CHKA	chr11	67821249	-	PPIH	chr1	43133418	+
intron-3UTR	ENST00000374595	ENST00000535628		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374595	ENST00000588982		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374595	ENST00000586438		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374595	ENST00000590800		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374595	ENST00000332053		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325551	ENST00000535628		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325551	ENST00000588982		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325551	ENST00000586438		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325551	ENST00000590800		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325551	ENST00000332053		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325580	ENST00000535628		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325580	ENST00000588982		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325580	ENST00000586438		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325580	ENST00000590800		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000325580	ENST00000332053		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374594	ENST00000535628		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374594	ENST00000588982		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374594	ENST00000586438		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374594	ENST00000590800		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374594	ENST00000332053		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000488130	ENST00000535628		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000488130	ENST00000588982		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000488130	ENST00000586438		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000488130	ENST00000590800		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000488130	ENST00000332053		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374593	ENST00000535628		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374593	ENST00000588982		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374593	ENST00000586438		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374593	ENST00000590800		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-3UTR	ENST00000374593	ENST00000332053		ChiTaRS3.1			BF885210	CTNNAL1	chr9	111706071	-	ZBTB7C	chr18	45554596	-
intron-intron	ENST00000309134	ENST00000452313		ChiTaRS3.1			AA150513	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000534025	ENST00000452313		ChiTaRS3.1			AA150513	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000525069	ENST00000452313		ChiTaRS3.1			AA150513	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000528117	ENST00000452313		ChiTaRS3.1			AA150513	TMEM9B	chr11	8969555	-	NPIPB7	chr16	28975467	+
intron-intron	ENST00000404397	ENST00000529163		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000404397	ENST00000394920		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000404397	ENST00000527914		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000404397	ENST00000262584		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000404397	ENST00000528957		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
3UTR-intron	ENST00000395323	ENST00000529163		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
3UTR-5UTR	ENST00000395323	ENST00000394920		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
3UTR-5UTR	ENST00000395323	ENST00000527914		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
3UTR-5UTR	ENST00000395323	ENST00000262584		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
3UTR-5UTR	ENST00000395323	ENST00000528957		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-intron	ENST00000406087	ENST00000529163		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000406087	ENST00000394920		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000406087	ENST00000527914		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000406087	ENST00000262584		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000406087	ENST00000528957		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-intron	ENST00000401506	ENST00000529163		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000401506	ENST00000394920		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000401506	ENST00000527914		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000401506	ENST00000262584		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000401506	ENST00000528957		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-intron	ENST00000467242	ENST00000529163		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000467242	ENST00000394920		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000467242	ENST00000527914		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000467242	ENST00000262584		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000467242	ENST00000528957		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-intron	ENST00000407930	ENST00000529163		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000407930	ENST00000394920		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000407930	ENST00000527914		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000407930	ENST00000262584		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-5UTR	ENST00000407930	ENST00000528957		ChiTaRS3.1			BG924889	LBH	chr2	30482430	+	RPL8	chr8	146017524	-
intron-3CDS	ENST00000225655	ENST00000358155		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000225655	ENST00000367733		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000225655	ENST00000355305		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000225655	ENST00000367731		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000225655	ENST00000520906		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-3CDS	ENST00000574872	ENST00000358155		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000574872	ENST00000367733		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000574872	ENST00000355305		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000574872	ENST00000367731		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
intron-intron	ENST00000574872	ENST00000520906		ChiTaRS3.1			DA340470	PFN1	chr17	4850028	-	DNM3	chr1	172357881	+
5UTR-3CDS	ENST00000394123	ENST00000554659		ChiTaRS3.1			BX644189	G3BP1	chr5	151151597	+	VTI1B	chr14	68129255	-
5UTR-3CDS	ENST00000543466	ENST00000554659		ChiTaRS3.1			BX644189	G3BP1	chr5	151151597	+	VTI1B	chr14	68129255	-
5UTR-3CDS	ENST00000356245	ENST00000554659		ChiTaRS3.1			BX644189	G3BP1	chr5	151151597	+	VTI1B	chr14	68129255	-
intron-3CDS	ENST00000282388	ENST00000579649		ChiTaRS3.1			BG271954	ZFP36L2	chr2	43451353	+	RPL36	chr19	5691411	-
intron-intron	ENST00000282388	ENST00000582380		ChiTaRS3.1			BG271954	ZFP36L2	chr2	43451353	+	RPL36	chr19	5691411	-
intron-intron	ENST00000282388	ENST00000577222		ChiTaRS3.1			BG271954	ZFP36L2	chr2	43451353	+	RPL36	chr19	5691411	-
intron-intron	ENST00000282388	ENST00000347512		ChiTaRS3.1			BG271954	ZFP36L2	chr2	43451353	+	RPL36	chr19	5691411	-
intron-intron	ENST00000282388	ENST00000579446		ChiTaRS3.1			BG271954	ZFP36L2	chr2	43451353	+	RPL36	chr19	5691411	-
intron-intron	ENST00000282388	ENST00000394580		ChiTaRS3.1			BG271954	ZFP36L2	chr2	43451353	+	RPL36	chr19	5691411	-
intron-3CDS	ENST00000604213	ENST00000392476		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000604213	ENST00000430767		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000564509		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000585618		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000413679		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000436233		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000443798		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000591437		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000604213	ENST00000431431		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000409796	ENST00000392476		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000409796	ENST00000430767		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000564509		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000585618		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000413679		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000436233		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000443798		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000591437		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000409796	ENST00000431431		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000344791	ENST00000392476		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000344791	ENST00000430767		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000564509		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000585618		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000413679		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000436233		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000443798		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000591437		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000344791	ENST00000431431		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000545021	ENST00000392476		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000545021	ENST00000430767		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000564509		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000585618		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000413679		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000436233		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000443798		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000591437		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000545021	ENST00000431431		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000332728	ENST00000392476		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-3CDS	ENST00000332728	ENST00000430767		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000564509		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000585618		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000413679		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000436233		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000443798		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000591437		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
intron-intron	ENST00000332728	ENST00000431431		ChiTaRS3.1			AA368545	LYSMD4	chr15	100272777	-	SEC14L1	chr17	75205457	+
In-frame	ENST00000450554	ENST00000366621		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
5CDS-3UTR	ENST00000450554	ENST00000472190		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
5CDS-3UTR	ENST00000450554	ENST00000366620		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
In-frame	ENST00000308924	ENST00000366621		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
5CDS-3UTR	ENST00000308924	ENST00000472190		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
5CDS-3UTR	ENST00000308924	ENST00000366620		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
intron-3CDS	ENST00000590551	ENST00000366621		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
intron-3UTR	ENST00000590551	ENST00000472190		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
intron-3UTR	ENST00000590551	ENST00000366620		ChiTaRS3.1			DB472673	U2AF2	chr19	56171916	+	KCNK1	chr1	233802441	+
intron-3CDS	ENST00000217195	ENST00000368884		ChiTaRS3.1			BU538390	C20orf27	chr20	3734588	-	PSMD4	chr1	151237348	+
intron-3CDS	ENST00000217195	ENST00000368881		ChiTaRS3.1			BU538390	C20orf27	chr20	3734588	-	PSMD4	chr1	151237348	+
intron-3UTR	ENST00000217195	ENST00000469786		ChiTaRS3.1			BU538390	C20orf27	chr20	3734588	-	PSMD4	chr1	151237348	+
intron-3CDS	ENST00000379772	ENST00000368884		ChiTaRS3.1			BU538390	C20orf27	chr20	3734588	-	PSMD4	chr1	151237348	+
intron-3CDS	ENST00000379772	ENST00000368881		ChiTaRS3.1			BU538390	C20orf27	chr20	3734588	-	PSMD4	chr1	151237348	+
intron-3UTR	ENST00000379772	ENST00000469786		ChiTaRS3.1			BU538390	C20orf27	chr20	3734588	-	PSMD4	chr1	151237348	+
3UTR-5UTR	ENST00000532456	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
3UTR-5UTR	ENST00000532456	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
3UTR-5UTR	ENST00000532456	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
3UTR-5UTR	ENST00000532456	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
3UTR-5UTR	ENST00000532456	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
3UTR-5UTR	ENST00000532456	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
intron-5UTR	ENST00000539648	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
intron-5UTR	ENST00000539648	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
intron-5UTR	ENST00000539648	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
intron-5UTR	ENST00000539648	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
intron-5UTR	ENST00000539648	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
intron-5UTR	ENST00000539648	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000528499	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000528499	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000528499	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000528499	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000528499	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000528499	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000263574	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000263574	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000263574	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000263574	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000263574	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000263574	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000345598	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000345598	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000345598	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000345598	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000345598	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000345598	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000338167	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000338167	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000338167	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000338167	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000338167	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000338167	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000278756	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000278756	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000278756	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000278756	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000278756	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5CDS-5UTR	ENST00000278756	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5UTR-5UTR	ENST00000543137	ENST00000443950		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5UTR-5UTR	ENST00000543137	ENST00000544000		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5UTR-5UTR	ENST00000543137	ENST00000357065		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5UTR-5UTR	ENST00000543137	ENST00000356053		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5UTR-5UTR	ENST00000543137	ENST00000337970		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
5UTR-5UTR	ENST00000543137	ENST00000498176		ChiTaRS3.1			DA660414	APLP2	chr11	129979374	+	HNRNPF	chr10	43883362	-
In-frame	ENST00000545606	ENST00000418919		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
In-frame	ENST00000545606	ENST00000258145		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
In-frame	ENST00000545606	ENST00000543646		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
In-frame	ENST00000545606	ENST00000542058		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
intron-3CDS	ENST00000539109	ENST00000418919		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
intron-3CDS	ENST00000539109	ENST00000258145		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
intron-3CDS	ENST00000539109	ENST00000543646		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
intron-3CDS	ENST00000539109	ENST00000542058		ChiTaRS3.1			BQ434418	CAND1	chr12	67696395	+	GNS	chr12	65116895	-
3UTR-intron	ENST00000447654	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
3UTR-intron	ENST00000401473	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
3UTR-intron	ENST00000311487	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
3UTR-intron	ENST00000347617	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
5CDS-intron	ENST00000395004	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
intron-intron	ENST00000478214	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
3UTR-intron	ENST00000374116	ENST00000390168		ChiTaRS3.1			BE901532	HMGA1	chr6	34213340	+	H19	chr11	2018315	-
intron-3CDS	ENST00000216281	ENST00000539107		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000216281	ENST00000545336		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000216281	ENST00000381256		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000216281	ENST00000381259		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000216281	ENST00000540401		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000216281	ENST00000306172		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000334701	ENST00000539107		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000334701	ENST00000545336		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000334701	ENST00000381256		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000334701	ENST00000381259		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000334701	ENST00000540401		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000334701	ENST00000306172		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000441629	ENST00000539107		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000441629	ENST00000545336		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000441629	ENST00000381256		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000441629	ENST00000381259		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000441629	ENST00000540401		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000441629	ENST00000306172		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000558600	ENST00000539107		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000558600	ENST00000545336		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000558600	ENST00000381256		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3CDS	ENST00000558600	ENST00000381259		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000558600	ENST00000540401		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
intron-3UTR	ENST00000558600	ENST00000306172		ChiTaRS3.1			BQ318634	HSP90AA1	chr14	102551149	-	CCDC91	chr12	28603291	+
5UTR-3CDS	ENST00000332149	ENST00000398907		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000332149	ENST00000398905		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000332149	ENST00000288319		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398897		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398911		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398910		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000417133		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000442448		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000453032		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398919		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000429727		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000485493		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000398907		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000398905		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000288319		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398897		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398911		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398910		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000417133		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000442448		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000453032		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398919		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000429727		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000485493		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000398907		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000398905		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000288319		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398897		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398911		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398910		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000417133		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000442448		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000453032		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398919		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000429727		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000485493		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000398907		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000398905		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000288319		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398897		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398911		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398910		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000417133		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000442448		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000453032		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398919		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000429727		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000485493		ChiTaRS3.1			EU432099	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-5UTR	ENST00000337768	ENST00000439590		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000337768	ENST00000311111		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000337768	ENST00000584577		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000337768	ENST00000534490		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000337768	ENST00000533498		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000406540	ENST00000439590		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000406540	ENST00000311111		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000406540	ENST00000584577		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000406540	ENST00000534490		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000406540	ENST00000533498		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000405491	ENST00000439590		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000405491	ENST00000311111		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000405491	ENST00000584577		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000405491	ENST00000534490		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000405491	ENST00000533498		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000464789	ENST00000439590		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000464789	ENST00000311111		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000464789	ENST00000584577		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000464789	ENST00000534490		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000464789	ENST00000533498		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000404798	ENST00000439590		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000404798	ENST00000311111		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000404798	ENST00000584577		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000404798	ENST00000534490		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
intron-5UTR	ENST00000404798	ENST00000533498		ChiTaRS3.1			BI861689	SUPT7L	chr2	27876379	-	RPL38	chr17	72200077	+
Frame-shit	ENST00000265846	ENST00000605788		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
Frame-shit	ENST00000265846	ENST00000405356		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
Frame-shit	ENST00000265846	ENST00000603742		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
Frame-shit	ENST00000265846	ENST00000488254		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
5CDS-3UTR	ENST00000265846	ENST00000477977		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000605788		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000405356		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000603742		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000449296	ENST00000488254		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3UTR	ENST00000449296	ENST00000477977		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000605788		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000405356		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000603742		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000539900	ENST00000488254		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3UTR	ENST00000539900	ENST00000477977		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000605788		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000405356		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000603742		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3CDS	ENST00000463358	ENST00000488254		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
intron-3UTR	ENST00000463358	ENST00000477977		ChiTaRS3.1			BM847741	ADAP1	chr7	994030	-	NOLC1	chr10	103921312	+
In-frame	ENST00000360467	ENST00000397517		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
In-frame	ENST00000360467	ENST00000539966		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
5CDS-5UTR	ENST00000360467	ENST00000481288		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
5CDS-5UTR	ENST00000360467	ENST00000376547		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-3CDS	ENST00000462309	ENST00000397517		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-3CDS	ENST00000462309	ENST00000539966		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-5UTR	ENST00000462309	ENST00000481288		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-5UTR	ENST00000462309	ENST00000376547		ChiTaRS3.1			AK300060	COL4A2	chr13	110960470	+	STK24	chr13	99171728	-
intron-3CDS	ENST00000296425	ENST00000366610		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000296425	ENST00000366609		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-intron	ENST00000296425	ENST00000491430		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000520121	ENST00000366610		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000520121	ENST00000366609		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-intron	ENST00000520121	ENST00000491430		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000394276	ENST00000366610		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000394276	ENST00000366609		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-intron	ENST00000394276	ENST00000491430		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000512483	ENST00000366610		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000512483	ENST00000366609		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-intron	ENST00000512483	ENST00000491430		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000503872	ENST00000366610		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000503872	ENST00000366609		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-intron	ENST00000503872	ENST00000491430		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000503588	ENST00000366610		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-3CDS	ENST00000503588	ENST00000366609		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
intron-intron	ENST00000503588	ENST00000491430		ChiTaRS3.1			BC028143	PGRMC2	chr4	129208737	-	IRF2BP2	chr1	234744454	-
In-frame	ENST00000264555	ENST00000248089		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000264555	ENST00000574151		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000264555	ENST00000396916		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000264555	ENST00000572355		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000264555	ENST00000574980		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000264555	ENST00000354679		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
In-frame	ENST00000413872	ENST00000248089		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000413872	ENST00000574151		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000413872	ENST00000396916		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000413872	ENST00000572355		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000413872	ENST00000574980		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000413872	ENST00000354679		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
In-frame	ENST00000533464	ENST00000248089		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000533464	ENST00000574151		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000533464	ENST00000396916		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000533464	ENST00000572355		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000533464	ENST00000574980		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000533464	ENST00000354679		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
In-frame	ENST00000416188	ENST00000248089		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000416188	ENST00000574151		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000416188	ENST00000396916		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000416188	ENST00000572355		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-5UTR	ENST00000416188	ENST00000574980		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
5CDS-intron	ENST00000416188	ENST00000354679		ChiTaRS3.1			AK308541	PHRF1	chr11	605724	+	HCFC1R1	chr16	3073535	-
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000354520	ENST00000395146		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000354520	ENST00000307808		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AF031404	KMT2A	chr11	118355690	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000377351	ENST00000394329		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000377351	ENST00000335110		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000335972	ENST00000394329		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000335972	ENST00000335110		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000490869	ENST00000394329		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000490869	ENST00000335110		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000377269	ENST00000394329		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3CDS	ENST00000377269	ENST00000335110		ChiTaRS3.1			BX281972	UBA1	chrX	47064653	+	FAT4	chr4	126412752	+
intron-3UTR	ENST00000324446	ENST00000351018		ChiTaRS3.1			BM841226	TTTY14	chrY	21152769	-	RHOG	chr11	3848349	-
intron-3UTR	ENST00000324446	ENST00000396979		ChiTaRS3.1			BM841226	TTTY14	chrY	21152769	-	RHOG	chr11	3848349	-
intron-intron	ENST00000324446	ENST00000396978		ChiTaRS3.1			BM841226	TTTY14	chrY	21152769	-	RHOG	chr11	3848349	-
intron-intron	ENST00000324446	ENST00000533217		ChiTaRS3.1			BM841226	TTTY14	chrY	21152769	-	RHOG	chr11	3848349	-
intron-3CDS	ENST00000289228	ENST00000528498		ChiTaRS3.1			BU616876	ACTR1B	chr2	98272523	+	RDX	chr11	110104131	+
intron-3CDS	ENST00000289228	ENST00000528900		ChiTaRS3.1			BU616876	ACTR1B	chr2	98272523	+	RDX	chr11	110104131	+
intron-3CDS	ENST00000289228	ENST00000405097		ChiTaRS3.1			BU616876	ACTR1B	chr2	98272523	+	RDX	chr11	110104131	+
intron-intron	ENST00000289228	ENST00000530301		ChiTaRS3.1			BU616876	ACTR1B	chr2	98272523	+	RDX	chr11	110104131	+
intron-intron	ENST00000289228	ENST00000343115		ChiTaRS3.1			BU616876	ACTR1B	chr2	98272523	+	RDX	chr11	110104131	+
intron-intron	ENST00000289228	ENST00000544551		ChiTaRS3.1			BU616876	ACTR1B	chr2	98272523	+	RDX	chr11	110104131	+
intron-3CDS	ENST00000435634	ENST00000234590		ChiTaRS3.1			CR993092	EXOSC6	chr16	70285575	-	ENO1	chr1	8932037	-
intron-3CDS	ENST00000535225	ENST00000370577		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000535225	ENST00000370570		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000358657	ENST00000370577		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000358657	ENST00000370570		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000453097	ENST00000370577		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000453097	ENST00000370570		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000394856	ENST00000370577		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000394856	ENST00000370570		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000514353	ENST00000370577		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000514353	ENST00000370570		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000546663	ENST00000370577		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
intron-3CDS	ENST00000546663	ENST00000370570		ChiTaRS3.1			DB569271	SLC4A8	chr12	51904007	+	LMBRD1	chr6	70386092	-
Frame-shit	ENST00000367182	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000367182	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000367182	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
3UTR-3CDS	ENST00000463049	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
3UTR-3CDS	ENST00000463049	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
3UTR-5UTR	ENST00000463049	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000507825	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000507825	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000507825	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000454264	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000454264	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000454264	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-3CDS	ENST00000367183	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-3CDS	ENST00000367183	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-5UTR	ENST00000367183	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000367180	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000367180	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000367180	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000391947	ENST00000383836		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
Frame-shit	ENST00000391947	ENST00000360413		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
5CDS-5UTR	ENST00000391947	ENST00000433332		ChiTaRS3.1			BP345804	MDM4	chr1	204501374	+	SRGAP3	chr3	9102046	-
intron-3CDS	ENST00000342350	ENST00000377560		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000342350	ENST00000430131		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000342350	ENST00000550722		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000342350	ENST00000549141		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588499	ENST00000377560		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588499	ENST00000430131		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588499	ENST00000550722		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000588499	ENST00000549141		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588295	ENST00000377560		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588295	ENST00000430131		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588295	ENST00000550722		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000588295	ENST00000549141		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000310604	ENST00000377560		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000310604	ENST00000430131		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000310604	ENST00000550722		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000310604	ENST00000549141		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000452796	ENST00000377560		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000452796	ENST00000430131		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000452796	ENST00000550722		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000452796	ENST00000549141		ChiTaRS3.1			BQ368387	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000327791	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000327791	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000442791	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000534854	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380790	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000380788	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000541702	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000394702		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000331242		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000413276		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000411766		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000432937		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000394703		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000580710		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-intron	ENST00000555248	ENST00000414194		ChiTaRS3.1			AU253133	YAF2	chr12	42610511	-	DMTF1	chr7	86822574	+
intron-3CDS	ENST00000373094	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000373094	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000373094	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000373097	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000373097	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000373097	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000406881	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000406881	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000406881	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000298274	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000298274	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000298274	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000361655	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000361655	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000361655	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000373088	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000373088	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000373088	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000504220	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000504220	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000504220	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000395337	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000395337	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000395337	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000361724	ENST00000339775		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-3CDS	ENST00000361724	ENST00000348354		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-intron	ENST00000361724	ENST00000464058		ChiTaRS3.1			BQ291951	PCDH11X	chrX	91079366	-	BTG3	chr21	18971002	-
intron-5UTR	ENST00000357654	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000357654	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000351666	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000309486	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000346315	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000354071	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000352993	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000468300	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591534	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000591849	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000586385	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000493795	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000471181	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000520984		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000311212		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000519744		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000517844		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000520347		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000519882		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000521272		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
intron-5UTR	ENST00000491747	ENST00000518336		ChiTaRS3.1			AV764395	BRCA1	chr17	41277787	+	ZNF706	chr8	102213972	-
Frame-shit	ENST00000226730	ENST00000053243		ChiTaRS3.1			Z14955	IL2	chr4	123374865	-	TNFRSF17	chr16	12059189	+
Frame-shit	ENST00000226730	ENST00000396495		ChiTaRS3.1			Z14955	IL2	chr4	123374865	-	TNFRSF17	chr16	12059189	+
In-frame	ENST00000372853	ENST00000315717		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
In-frame	ENST00000372853	ENST00000295685		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
5CDS-3UTR	ENST00000372853	ENST00000477992		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
In-frame	ENST00000452446	ENST00000315717		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
In-frame	ENST00000452446	ENST00000295685		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
5CDS-3UTR	ENST00000452446	ENST00000477992		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
In-frame	ENST00000372850	ENST00000315717		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
In-frame	ENST00000372850	ENST00000295685		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
5CDS-3UTR	ENST00000372850	ENST00000477992		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
Frame-shit	ENST00000372847	ENST00000315717		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
Frame-shit	ENST00000372847	ENST00000295685		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
5CDS-3UTR	ENST00000372847	ENST00000477992		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
3UTR-3CDS	ENST00000483206	ENST00000315717		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
3UTR-3CDS	ENST00000483206	ENST00000295685		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
3UTR-3UTR	ENST00000483206	ENST00000477992		ChiTaRS3.1			BF840371	URM1	chr9	131140385	+	ARPC2	chr2	219114087	+
intron-3CDS	ENST00000373627	ENST00000245907		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-intron	ENST00000373627	ENST00000599668		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-3CDS	ENST00000373616	ENST00000245907		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-intron	ENST00000373616	ENST00000599668		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-3CDS	ENST00000471737	ENST00000245907		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-intron	ENST00000471737	ENST00000599668		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-3CDS	ENST00000538808	ENST00000245907		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-intron	ENST00000538808	ENST00000599668		ChiTaRS3.1			AA169517	MTCH1	chr6	36949310	-	C3	chr19	6684452	-
intron-intron	ENST00000379565	ENST00000599680		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000309877		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000600911		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000596822		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000601291		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000377139		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000597198		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000593922		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000600022		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000599223		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000596765		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000599144		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000598808		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000377135		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379565	ENST00000442265		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000599680		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000309877		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000600911		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000596822		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000601291		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000377139		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000597198		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000593922		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000600022		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000599223		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000596765		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000599144		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000598808		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000377135		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000544447	ENST00000442265		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000599680		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000309877		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000600911		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000596822		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000601291		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000377139		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000597198		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000593922		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000600022		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000599223		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000596765		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000599144		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000598808		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000377135		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000379548	ENST00000442265		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000599680		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000309877		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000600911		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000596822		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000601291		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000377139		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000597198		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000593922		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000600022		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000599223		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000596765		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000599144		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000598808		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000377135		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000540702	ENST00000442265		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000599680		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000309877		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000600911		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000596822		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000601291		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000377139		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000597198		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000593922		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000600022		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000599223		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000596765		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000599144		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000598808		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000377135		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
intron-intron	ENST00000479809	ENST00000442265		ChiTaRS3.1			AW297289	RPS6KA3	chrX	20273653	+	IRF3	chr19	50165136	+
In-frame	ENST00000393561	ENST00000261667		ChiTaRS3.1			CB119417	LAMB1	chr7	107569507	-	KPNA3	chr13	50279920	-
Frame-shit	ENST00000222399	ENST00000261667		ChiTaRS3.1			CB119417	LAMB1	chr7	107569507	-	KPNA3	chr13	50279920	-
intron-3CDS	ENST00000393560	ENST00000261667		ChiTaRS3.1			CB119417	LAMB1	chr7	107569507	-	KPNA3	chr13	50279920	-
intron-3CDS	ENST00000474380	ENST00000261667		ChiTaRS3.1			CB119417	LAMB1	chr7	107569507	-	KPNA3	chr13	50279920	-
intron-intron	ENST00000262188	ENST00000452313		ChiTaRS3.1			BP276382	SMARCD3	chr7	150942569	-	NPIPB7	chr16	28592375	+
intron-intron	ENST00000392811	ENST00000452313		ChiTaRS3.1			BP276382	SMARCD3	chr7	150942569	-	NPIPB7	chr16	28592375	+
intron-intron	ENST00000356800	ENST00000452313		ChiTaRS3.1			BP276382	SMARCD3	chr7	150942569	-	NPIPB7	chr16	28592375	+
intron-intron	ENST00000477169	ENST00000452313		ChiTaRS3.1			BP276382	SMARCD3	chr7	150942569	-	NPIPB7	chr16	28592375	+
intron-3CDS	ENST00000256637	ENST00000419152		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000532400		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000532741		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000317198		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000526838		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000442189		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000528610		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000423316		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000395119		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000529272		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000531621		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000524624		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000256637	ENST00000531770		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-3CDS	ENST00000538502	ENST00000419152		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000532400		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000532741		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000317198		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000526838		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000442189		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000528610		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000423316		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000395119		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000529272		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000531621		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000524624		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000538502	ENST00000531770		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-3CDS	ENST00000482236	ENST00000419152		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000532400		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000532741		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000317198		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000526838		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000442189		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000528610		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000423316		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000395119		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000529272		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000531621		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000524624		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-intron	ENST00000482236	ENST00000531770		ChiTaRS3.1			BF912863	SORT1	chr1	109856567	-	EEF1D	chr8	144668431	-
intron-3UTR	ENST00000268483	ENST00000275300		ChiTaRS3.1			BC070300	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000268483	ENST00000392145		ChiTaRS3.1			BC070300	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000423037	ENST00000275300		ChiTaRS3.1			BC070300	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000423037	ENST00000392145		ChiTaRS3.1			BC070300	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000426362	ENST00000275300		ChiTaRS3.1			BC070300	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
intron-3UTR	ENST00000426362	ENST00000392145		ChiTaRS3.1			BC070300	TXNL4B	chr16	72090457	+	SLC22A3	chr6	160872867	+
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA721358	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000417237	ENST00000229270		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-5UTR	ENST00000417237	ENST00000396705		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000417237	ENST00000488464		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000417237	ENST00000535434		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-3CDS	ENST00000342649	ENST00000229270		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-5UTR	ENST00000342649	ENST00000396705		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000342649	ENST00000488464		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000342649	ENST00000535434		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-3CDS	ENST00000383746	ENST00000229270		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-5UTR	ENST00000383746	ENST00000396705		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-intron	ENST00000383746	ENST00000488464		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-intron	ENST00000383746	ENST00000535434		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-3CDS	ENST00000396078	ENST00000229270		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-5UTR	ENST00000396078	ENST00000396705		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-intron	ENST00000396078	ENST00000488464		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
3UTR-intron	ENST00000396078	ENST00000535434		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-3CDS	ENST00000462612	ENST00000229270		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-5UTR	ENST00000462612	ENST00000396705		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000462612	ENST00000488464		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000462612	ENST00000535434		ChiTaRS3.1			BM834387	TCAIM	chr3	44400046	+	TPI1	chr12	6976703	+
intron-intron	ENST00000216146	ENST00000553781		ChiTaRS3.1			CX786698	RPL3	chr22	39711429	-	BCL2L2-PABPN1	chr14	23795153	+
intron-intron	ENST00000216146	ENST00000557008		ChiTaRS3.1			CX786698	RPL3	chr22	39711429	-	BCL2L2-PABPN1	chr14	23795153	+
intron-intron	ENST00000465618	ENST00000553781		ChiTaRS3.1			CX786698	RPL3	chr22	39711429	-	BCL2L2-PABPN1	chr14	23795153	+
intron-intron	ENST00000465618	ENST00000557008		ChiTaRS3.1			CX786698	RPL3	chr22	39711429	-	BCL2L2-PABPN1	chr14	23795153	+
intron-intron	ENST00000401609	ENST00000553781		ChiTaRS3.1			CX786698	RPL3	chr22	39711429	-	BCL2L2-PABPN1	chr14	23795153	+
intron-intron	ENST00000401609	ENST00000557008		ChiTaRS3.1			CX786698	RPL3	chr22	39711429	-	BCL2L2-PABPN1	chr14	23795153	+
Frame-shit	ENST00000263238	ENST00000390548		ChiTaRS3.1			AW176085	ACTR3	chr2	114647889	+	IGHG1	chr14	106208463	-
5UTR-3CDS	ENST00000536059	ENST00000390548		ChiTaRS3.1			AW176085	ACTR3	chr2	114647889	+	IGHG1	chr14	106208463	-
intron-3CDS	ENST00000535589	ENST00000390548		ChiTaRS3.1			AW176085	ACTR3	chr2	114647889	+	IGHG1	chr14	106208463	-
3UTR-3CDS	ENST00000360184	ENST00000222644		ChiTaRS3.1			AA256222	DYNC1H1	chr14	102517084	+	MPP6	chr7	24663301	+
3UTR-intron	ENST00000360184	ENST00000409761		ChiTaRS3.1			AA256222	DYNC1H1	chr14	102517084	+	MPP6	chr7	24663301	+
3UTR-intron	ENST00000360184	ENST00000396475		ChiTaRS3.1			AA256222	DYNC1H1	chr14	102517084	+	MPP6	chr7	24663301	+
intron-3CDS	ENST00000556791	ENST00000222644		ChiTaRS3.1			AA256222	DYNC1H1	chr14	102517084	+	MPP6	chr7	24663301	+
intron-intron	ENST00000556791	ENST00000409761		ChiTaRS3.1			AA256222	DYNC1H1	chr14	102517084	+	MPP6	chr7	24663301	+
intron-intron	ENST00000556791	ENST00000396475		ChiTaRS3.1			AA256222	DYNC1H1	chr14	102517084	+	MPP6	chr7	24663301	+
intron-3CDS	ENST00000485761	ENST00000255945		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000485761	ENST00000461940		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3UTR	ENST00000485761	ENST00000494750		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000367036	ENST00000255945		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000367036	ENST00000461940		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3UTR	ENST00000367036	ENST00000494750		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000310833	ENST00000255945		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000310833	ENST00000461940		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3UTR	ENST00000310833	ENST00000494750		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000356522	ENST00000255945		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000356522	ENST00000461940		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3UTR	ENST00000356522	ENST00000494750		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000537704	ENST00000255945		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3CDS	ENST00000537704	ENST00000461940		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
intron-3UTR	ENST00000537704	ENST00000494750		ChiTaRS3.1			CB218257	CD34	chr1	208060636	-	GIMAP4	chr7	150269865	+
5UTR-3CDS	ENST00000600652	ENST00000339362		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000600652	ENST00000261908		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000600652	ENST00000558964		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000600652	ENST00000560262		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-intron	ENST00000600652	ENST00000560352		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000602810	ENST00000339362		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000602810	ENST00000261908		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000602810	ENST00000558964		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-3CDS	ENST00000602810	ENST00000560262		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
5UTR-intron	ENST00000602810	ENST00000560352		ChiTaRS3.1			DB061475	ZSCAN16-AS1	chr6	28104521	-	NEO1	chr15	73551106	+
intron-intron	ENST00000225964	ENST00000375244		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000451343		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000375247		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000479795		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000433037		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000549232		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000383159		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000489006		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000469250		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000440248		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000550212		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000548649		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000424718		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000475986		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000550539		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000471059		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000551808		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000548628		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000549652		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000553092		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000552665		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000465958		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000546684		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000464376		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000552149		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-intron	ENST00000225964	ENST00000551201		ChiTaRS3.1			AI868659	COL1A1	chr17	48261534	+	TNXB	chr6	3354031	+
intron-3UTR	ENST00000534348	ENST00000323851		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000534348	ENST00000354944		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-5UTR	ENST00000534348	ENST00000521414		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000534348	ENST00000537882		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000534348	ENST00000414097		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-intron	ENST00000534348	ENST00000518176		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-intron	ENST00000534348	ENST00000522476		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-intron	ENST00000534348	ENST00000518066		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000604306	ENST00000323851		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000604306	ENST00000354944		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-5UTR	ENST00000604306	ENST00000521414		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000604306	ENST00000537882		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-3UTR	ENST00000604306	ENST00000414097		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-intron	ENST00000604306	ENST00000518176		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-intron	ENST00000604306	ENST00000522476		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
intron-intron	ENST00000604306	ENST00000518066		ChiTaRS3.1			CD693882	NEDD8-MDP1	chr14	24686262	-	NDRG1	chr8	134249937	-
3UTR-3CDS	ENST00000403681	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000403681	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000403681	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000403681	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
3UTR-3CDS	ENST00000403681	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
3UTR-3UTR	ENST00000403681	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000541363	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000541363	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000541363	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000541363	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000541363	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000541363	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393577	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393577	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393577	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393577	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393577	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000393577	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393578	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393578	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393578	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393578	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000393578	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000393578	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000425208	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000425208	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000425208	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000425208	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000425208	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000425208	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000536545	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000536545	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000536545	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000536545	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000536545	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000536545	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000354636	ENST00000487861		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000354636	ENST00000471583		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000354636	ENST00000487270		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000354636	ENST00000488612		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000354636	ENST00000390683		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3UTR	ENST00000354636	ENST00000469165		ChiTaRS3.1			AY138860	HMGA2	chr12	66357154	+	RAD51B	chr14	68758601	+
intron-3CDS	ENST00000264235	ENST00000237247		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000264235	ENST00000371039		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000264235	ENST00000371035		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000264235	ENST00000468286		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000264235	ENST00000371036		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000264235	ENST00000371037		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000264235	ENST00000435165		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000316626	ENST00000237247		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000316626	ENST00000371039		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000316626	ENST00000371035		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000316626	ENST00000468286		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000316626	ENST00000371036		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000316626	ENST00000371037		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000316626	ENST00000435165		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000473886	ENST00000237247		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000473886	ENST00000371039		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-3CDS	ENST00000473886	ENST00000371035		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000473886	ENST00000468286		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000473886	ENST00000371036		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000473886	ENST00000371037		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000473886	ENST00000435165		ChiTaRS3.1			R11870	GSK3B	chr3	119696071	-	SGIP1	chr1	67185044	+
intron-intron	ENST00000216281	ENST00000395996		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000216281	ENST00000358544		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000216281	ENST00000357162		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000216281	ENST00000355155		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000216281	ENST00000441350		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000216281	ENST00000521932		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000334701	ENST00000395996		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000334701	ENST00000358544		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000334701	ENST00000357162		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000334701	ENST00000355155		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000334701	ENST00000441350		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000334701	ENST00000521932		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000441629	ENST00000395996		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000441629	ENST00000358544		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000441629	ENST00000357162		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000441629	ENST00000355155		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000441629	ENST00000441350		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000441629	ENST00000521932		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000558600	ENST00000395996		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000558600	ENST00000358544		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000558600	ENST00000357162		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000558600	ENST00000355155		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000558600	ENST00000441350		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-intron	ENST00000558600	ENST00000521932		ChiTaRS3.1			DA609865	HSP90AA1	chr14	102552167	-	VPS13B	chr8	100508163	-
intron-3CDS	ENST00000417404	ENST00000355413		ChiTaRS3.1			BC040877	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-3CDS	ENST00000417404	ENST00000473247		ChiTaRS3.1			BC040877	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-intron	ENST00000417404	ENST00000495028		ChiTaRS3.1			BC040877	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-intron	ENST00000417404	ENST00000535825		ChiTaRS3.1			BC040877	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
intron-intron	ENST00000417404	ENST00000492693		ChiTaRS3.1			BC040877	LRRC37BP1	chr17	28975474	+	AGK	chr7	141301004	+
Frame-shit	ENST00000265734	ENST00000534358		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
Frame-shit	ENST00000265734	ENST00000389506		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
Frame-shit	ENST00000265734	ENST00000354520		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
5CDS-intron	ENST00000265734	ENST00000420751		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
In-frame	ENST00000424848	ENST00000534358		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
In-frame	ENST00000424848	ENST00000389506		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
In-frame	ENST00000424848	ENST00000354520		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
5CDS-intron	ENST00000424848	ENST00000420751		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
intron-3CDS	ENST00000491250	ENST00000534358		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
intron-3CDS	ENST00000491250	ENST00000389506		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
intron-3CDS	ENST00000491250	ENST00000354520		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
intron-intron	ENST00000491250	ENST00000420751		ChiTaRS3.1			AF492830	CDK6	chr7	92404010	-	KMT2A	chr11	118360505	+
intron-3UTR	ENST00000545187	ENST00000373253		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000545187	ENST00000356090		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000545187	ENST00000373243		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-intron	ENST00000545187	ENST00000459931		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000338128	ENST00000373253		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000338128	ENST00000356090		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000338128	ENST00000373243		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-intron	ENST00000338128	ENST00000459931		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000457269	ENST00000373253		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000457269	ENST00000356090		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000457269	ENST00000373243		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-intron	ENST00000457269	ENST00000459931		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000578963	ENST00000373253		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000578963	ENST00000356090		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000578963	ENST00000373243		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-intron	ENST00000578963	ENST00000459931		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000317018	ENST00000373253		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000317018	ENST00000356090		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3UTR	ENST00000317018	ENST00000373243		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-intron	ENST00000317018	ENST00000459931		ChiTaRS3.1			BF945926	ISYNA1	chr19	18546212	-	NCDN	chr1	36032076	+
intron-3CDS	ENST00000528896	ENST00000373166		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000528896	ENST00000462715		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000528896	ENST00000373163		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000528896	ENST00000373162		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-intron	ENST00000528896	ENST00000373159		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-3CDS	ENST00000544884	ENST00000373166		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000544884	ENST00000462715		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000544884	ENST00000373163		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000544884	ENST00000373162		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-intron	ENST00000544884	ENST00000373159		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-3CDS	ENST00000389003	ENST00000373166		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000389003	ENST00000462715		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000389003	ENST00000373163		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000389003	ENST00000373162		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-intron	ENST00000389003	ENST00000373159		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-3CDS	ENST00000579924	ENST00000373166		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000579924	ENST00000462715		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000579924	ENST00000373163		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-5UTR	ENST00000579924	ENST00000373162		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-intron	ENST00000579924	ENST00000373159		ChiTaRS3.1			AK130007	KIAA0100	chr17	26965040	-	TRAPPC3	chr1	36602852	-
intron-3CDS	ENST00000361151	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000361151	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000361151	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000361151	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000361451	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000361451	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000361451	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000361451	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588933	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588933	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588933	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000588933	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588221	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588221	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588221	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000588221	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000592904	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000592904	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000592904	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000592904	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000590306	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000590306	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000590306	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000590306	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000592292	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000592292	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000592292	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000592292	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588013	ENST00000328194		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588013	ENST00000530044		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000588013	ENST00000527700		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-intron	ENST00000588013	ENST00000526523		ChiTaRS3.1			DB121048	ZNF266	chr19	9530839	-	DENND5A	chr11	9167251	-
intron-3CDS	ENST00000311713	ENST00000331872		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000311713	ENST00000417584		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000311713	ENST00000311223		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000311713	ENST00000491322		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000311713	ENST00000339526		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000278856	ENST00000331872		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000278856	ENST00000417584		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000278856	ENST00000311223		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000278856	ENST00000491322		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000278856	ENST00000339526		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000529106	ENST00000331872		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000529106	ENST00000417584		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000529106	ENST00000311223		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000529106	ENST00000491322		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000529106	ENST00000339526		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000525239	ENST00000331872		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000525239	ENST00000417584		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000525239	ENST00000311223		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000525239	ENST00000491322		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000525239	ENST00000339526		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000525752	ENST00000331872		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000525752	ENST00000417584		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000525752	ENST00000311223		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000525752	ENST00000491322		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000525752	ENST00000339526		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000540620	ENST00000331872		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000540620	ENST00000417584		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-3CDS	ENST00000540620	ENST00000311223		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000540620	ENST00000491322		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
intron-5UTR	ENST00000540620	ENST00000339526		ChiTaRS3.1			DA275818	WDR74	chr11	62609180	-	GLUL	chr1	182353729	-
In-frame	ENST00000415229	ENST00000396863		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
In-frame	ENST00000415229	ENST00000217026		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000535727	ENST00000396863		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000535727	ENST00000217026		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
In-frame	ENST00000301776	ENST00000396863		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
In-frame	ENST00000301776	ENST00000217026		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000528206	ENST00000396863		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000528206	ENST00000217026		ChiTaRS3.1			AI655904	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
5CDS-3UTR	ENST00000523731	ENST00000319006		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000523731	ENST00000528097		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000523731	ENST00000532202		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000447247	ENST00000319006		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000447247	ENST00000528097		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000447247	ENST00000532202		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-3UTR	ENST00000520845	ENST00000319006		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-3UTR	ENST00000520845	ENST00000528097		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-3UTR	ENST00000520845	ENST00000532202		ChiTaRS3.1			AX746892	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000260766	ENST00000377122		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000260766	ENST00000417816		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000260766	ENST00000377159		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000260766	ENST00000377119		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000260766	ENST00000464278		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-3UTR	ENST00000371380	ENST00000377122		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000371380	ENST00000417816		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000371380	ENST00000377159		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000371380	ENST00000377119		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
5CDS-intron	ENST00000371380	ENST00000464278		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-3UTR	ENST00000371385	ENST00000377122		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371385	ENST00000417816		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371385	ENST00000377159		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371385	ENST00000377119		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371385	ENST00000464278		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-3UTR	ENST00000371375	ENST00000377122		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371375	ENST00000417816		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371375	ENST00000377159		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371375	ENST00000377119		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000371375	ENST00000464278		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-3UTR	ENST00000464214	ENST00000377122		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000464214	ENST00000417816		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000464214	ENST00000377159		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000464214	ENST00000377119		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
intron-intron	ENST00000464214	ENST00000464278		ChiTaRS3.1			DA374251	PLCE1	chr10	95791568	+	NEBL	chr10	21072017	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU216066	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU216066	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU216066	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU216066	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
3UTR-intron	ENST00000296577	ENST00000376177		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000396172		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000417556		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000458640		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000462421		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000415382		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000453105		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000449074		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000552820		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000463430		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000438578		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000415689		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000456476		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000412106		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000547039		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000550435		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000453488		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000453138		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000552288		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000441425		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000456666		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000546633		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000483957		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000430703		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000416863		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000413678		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000414440		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000547489		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000551031		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000468089		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000400293		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000400296		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000400295		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000383508		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000548340		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000548331		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000495391		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000446341		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000548614		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000448296		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000412330		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000445218		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000546637		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000489325		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-3UTR	ENST00000296577	ENST00000450987		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-3UTR	ENST00000296577	ENST00000431360		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-3UTR	ENST00000296577	ENST00000430784		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-3UTR	ENST00000296577	ENST00000550217		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-5UTR	ENST00000296577	ENST00000470514		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
3UTR-intron	ENST00000296577	ENST00000549374		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000376177		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000396172		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000417556		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000458640		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000462421		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000415382		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000453105		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000449074		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000552820		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000463430		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000438578		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000415689		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000456476		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000412106		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000547039		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000550435		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000453488		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000453138		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000552288		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000441425		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000456666		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000546633		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000483957		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000430703		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000416863		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000413678		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000414440		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000547489		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000551031		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000468089		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000400293		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000400296		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000400295		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000383508		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000548340		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000548331		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000495391		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000446341		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000548614		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000448296		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000412330		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000445218		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000546637		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000489325		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-3UTR	ENST00000502803	ENST00000450987		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-3UTR	ENST00000502803	ENST00000431360		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-3UTR	ENST00000502803	ENST00000430784		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-3UTR	ENST00000502803	ENST00000550217		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-5UTR	ENST00000502803	ENST00000470514		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
intron-intron	ENST00000502803	ENST00000549374		ChiTaRS3.1			AB062293	ABCE1	chr4	146049667	+	DDX39B	chr6	2828923	-
In-frame	ENST00000534358	ENST00000503238		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000358350		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000537810		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000264319		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000507711		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000514783		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000507873		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000506685		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000503238		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000358350		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000537810		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000264319		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000507711		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000514783		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000507873		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000506685		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000503238		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000358350		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
In-frame	ENST00000354520	ENST00000537810		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000354520	ENST00000264319		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000507711		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000514783		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000354520	ENST00000507873		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000354520	ENST00000506685		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000503238		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000358350		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-3CDS	ENST00000420751	ENST00000537810		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-5UTR	ENST00000420751	ENST00000264319		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000507711		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000514783		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-5UTR	ENST00000420751	ENST00000507873		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
3UTR-intron	ENST00000420751	ENST00000506685		ChiTaRS3.1			DQ299940	KMT2A	chr11	118355029	+	FRYL	chr4	48530355	-
intron-intron	ENST00000367142	ENST00000397703		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000367142	ENST00000520607		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000367142	ENST00000356864		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000367142	ENST00000540813		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000464938	ENST00000397703		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000464938	ENST00000520607		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000464938	ENST00000356864		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-intron	ENST00000464938	ENST00000540813		ChiTaRS3.1			AW298308	NUCKS1	chr1	205686146	+	TNFRSF10C	chr8	22974238	-
intron-3CDS	ENST00000483612	ENST00000298892		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000483612	ENST00000395805		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000483612	ENST00000251071		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000483612	ENST00000308433		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-intron	ENST00000483612	ENST00000417045		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-intron	ENST00000483612	ENST00000538387		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3CDS	ENST00000292401	ENST00000298892		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000292401	ENST00000395805		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000292401	ENST00000251071		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000292401	ENST00000308433		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-intron	ENST00000292401	ENST00000417045		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-intron	ENST00000292401	ENST00000538387		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3CDS	ENST00000411734	ENST00000298892		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000411734	ENST00000395805		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000411734	ENST00000251071		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000411734	ENST00000308433		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-intron	ENST00000411734	ENST00000417045		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-intron	ENST00000411734	ENST00000538387		ChiTaRS3.1			AX795410	AZGP1	chr7	99573584	-	CAPRIN2	chr12	30863228	-
intron-3UTR	ENST00000296754	ENST00000461988		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000296754	ENST00000419840		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000296754	ENST00000394893		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000296754	ENST00000475509		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000296754	ENST00000545601		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000296754	ENST00000450476		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000296754	ENST00000439269		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000443439	ENST00000461988		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000443439	ENST00000419840		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000443439	ENST00000394893		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000443439	ENST00000475509		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000443439	ENST00000545601		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000443439	ENST00000450476		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000443439	ENST00000439269		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000514604	ENST00000461988		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000514604	ENST00000419840		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000514604	ENST00000394893		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000514604	ENST00000475509		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000514604	ENST00000545601		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000514604	ENST00000450476		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-3UTR	ENST00000514604	ENST00000439269		ChiTaRS3.1			AK074281	ERAP1	chr5	96244734	+	POR	chr7	75616093	+
intron-intron	ENST00000322723	ENST00000483195		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000394019		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000423644		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000346834		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000359484		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000357822		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000358683		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000377632		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-intron	ENST00000322723	ENST00000377634		ChiTaRS3.1			CN335139	NCL	chr2	232320151	-	SLC4A5	chr2	74588428	-
intron-3UTR	ENST00000344595	ENST00000374078		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000344595	ENST00000374077		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000344595	ENST00000374072		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-intron	ENST00000344595	ENST00000397416		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000344595	ENST00000336695		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000576848	ENST00000374078		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000576848	ENST00000374077		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000576848	ENST00000374072		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-intron	ENST00000576848	ENST00000397416		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3UTR	ENST00000576848	ENST00000336695		ChiTaRS3.1			CN347172	SRR	chr17	2226860	-	ROMO1	chr20	34288835	+
intron-3CDS	ENST00000317961	ENST00000265462		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000317961	ENST00000352435		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000317961	ENST00000347941		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000541639	ENST00000265462		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000541639	ENST00000352435		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000541639	ENST00000347941		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000382806	ENST00000265462		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000382806	ENST00000352435		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
intron-3CDS	ENST00000382806	ENST00000347941		ChiTaRS3.1			BC011053	KDM5D	chrY	21883165	-	PRDX5	chr11	64089094	+
5CDS-3UTR	ENST00000328195	ENST00000193322		ChiTaRS3.1			DB495307	PROSC	chr8	37623876	+	OSTM1	chr6	108363953	-
5CDS-5UTR	ENST00000328195	ENST00000492130		ChiTaRS3.1			DB495307	PROSC	chr8	37623876	+	OSTM1	chr6	108363953	-
3UTR-intron	ENST00000256686	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000256686	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000256686	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000256686	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000256686	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000549288	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000549288	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000549288	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000549288	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000549288	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552561	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552561	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552561	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552561	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552561	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552546	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552546	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552546	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552546	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000552546	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000550552	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000550552	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000550552	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000550552	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
intron-intron	ENST00000550552	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000429772	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000429772	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000429772	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000429772	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000429772	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000449758	ENST00000417626		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000449758	ENST00000436390		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000449758	ENST00000429673		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000449758	ENST00000336089		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000449758	ENST00000484043		ChiTaRS3.1			BF002318	TMEM106C	chr12	48362423	-	IFRD2	chr3	50326691	+
3UTR-intron	ENST00000274747	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000274747	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-5UTR	ENST00000274747	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000274747	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000274747	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000274747	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000274747	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000543597	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000543597	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-5UTR	ENST00000543597	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000543597	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000543597	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000543597	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000543597	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000535061	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000535061	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-5UTR	ENST00000535061	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000535061	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000535061	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000535061	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000535061	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000483634	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000483634	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-5UTR	ENST00000483634	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000483634	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000483634	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000483634	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000483634	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000378353	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000378353	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-5UTR	ENST00000378353	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000378353	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000378353	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000378353	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000378353	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000378386	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000378386	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-5UTR	ENST00000378386	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000378386	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000378386	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000378386	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
3UTR-intron	ENST00000378386	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000443868	ENST00000405805		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000443868	ENST00000339872		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-5UTR	ENST00000443868	ENST00000341423		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000443868	ENST00000399489		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000443868	ENST00000399494		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000443868	ENST00000326004		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-intron	ENST00000443868	ENST00000468384		ChiTaRS3.1			BP243792	MRS2	chr6	24424361	+	HMGB1	chr13	31040074	-
intron-3CDS	ENST00000550574	ENST00000302182		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3CDS	ENST00000550574	ENST00000535788		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3UTR	ENST00000550574	ENST00000578649		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3UTR	ENST00000550574	ENST00000395839		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3UTR	ENST00000550574	ENST00000395837		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
Frame-shit	ENST00000541364	ENST00000302182		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
In-frame	ENST00000541364	ENST00000535788		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
5CDS-3UTR	ENST00000541364	ENST00000578649		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
5CDS-3UTR	ENST00000541364	ENST00000395839		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
5CDS-3UTR	ENST00000541364	ENST00000395837		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
Frame-shit	ENST00000301072	ENST00000302182		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
Frame-shit	ENST00000301072	ENST00000535788		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
5CDS-3UTR	ENST00000301072	ENST00000578649		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
5CDS-3UTR	ENST00000301072	ENST00000395839		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
5CDS-3UTR	ENST00000301072	ENST00000395837		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3CDS	ENST00000549183	ENST00000302182		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3CDS	ENST00000549183	ENST00000535788		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3UTR	ENST00000549183	ENST00000578649		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3UTR	ENST00000549183	ENST00000395839		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
intron-3UTR	ENST00000549183	ENST00000395837		ChiTaRS3.1			CD367941	TUBA1C	chr12	49666552	-	UBB	chr17	16285798	-
Frame-shit	ENST00000378628	ENST00000418604		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000378628	ENST00000303958		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000378628	ENST00000361621		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
5CDS-3UTR	ENST00000378628	ENST00000466486		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
intron-3CDS	ENST00000491253	ENST00000418604		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
intron-3CDS	ENST00000491253	ENST00000303958		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
intron-3CDS	ENST00000491253	ENST00000361621		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
intron-3UTR	ENST00000491253	ENST00000466486		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000543642	ENST00000418604		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000543642	ENST00000303958		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000543642	ENST00000361621		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
5CDS-3UTR	ENST00000543642	ENST00000466486		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000542554	ENST00000418604		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000542554	ENST00000303958		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000542554	ENST00000361621		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
5CDS-3UTR	ENST00000542554	ENST00000466486		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000449135	ENST00000418604		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000449135	ENST00000303958		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000449135	ENST00000361621		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
5CDS-3UTR	ENST00000449135	ENST00000466486		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000463135	ENST00000418604		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000463135	ENST00000303958		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
Frame-shit	ENST00000463135	ENST00000361621		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
5CDS-3UTR	ENST00000463135	ENST00000466486		ChiTaRS3.1			AA348328	PRRG1	chrX	37285177	+	PLP1	chrX	103043392	+
intron-3CDS	ENST00000536719	ENST00000272542		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-intron	ENST00000536719	ENST00000480984		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-3CDS	ENST00000251968	ENST00000272542		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-intron	ENST00000251968	ENST00000480984		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-3CDS	ENST00000357193	ENST00000272542		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-intron	ENST00000357193	ENST00000480984		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-3CDS	ENST00000543087	ENST00000272542		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-intron	ENST00000543087	ENST00000480984		ChiTaRS3.1			BQ181066	TSG101	chr11	18503315	+	SLC20A1	chr2	113404585	-
intron-3UTR	ENST00000475548	ENST00000395338		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000475548	ENST00000458307		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000475548	ENST00000476226		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000475548	ENST00000538581		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000475548	ENST00000273588		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000475548	ENST00000546031		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000395338		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000458307		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000358743	ENST00000476226		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000538581		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000273588		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000358743	ENST00000546031		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000395338		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000458307		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000347557	ENST00000476226		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000538581		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000273588		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000347557	ENST00000546031		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000395338		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000458307		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000333137	ENST00000476226		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000538581		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000273588		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000333137	ENST00000546031		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000395338		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000458307		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000404574	ENST00000476226		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000538581		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000273588		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000404574	ENST00000546031		ChiTaRS3.1			AX747817	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
5CDS-intron	ENST00000339976	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000339976	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000339976	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000339976	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000339976	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000004980	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000004980	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000004980	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000004980	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000004980	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000448372	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000448372	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000448372	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000448372	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000448372	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000551330	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000551330	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000551330	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000551330	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000551330	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549518	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549518	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549518	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549518	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000549518	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549595	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549595	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549595	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549595	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000549595	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-intron	ENST00000547886	ENST00000355192		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-5UTR	ENST00000547886	ENST00000308259		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-intron	ENST00000547886	ENST00000540804		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-5UTR	ENST00000547886	ENST00000535664		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-3UTR	ENST00000547886	ENST00000538725		ChiTaRS3.1			CK902687	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			AW993962	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-intron	ENST00000295633	ENST00000265316		ChiTaRS3.1			R74223	FSTL1	chr3	120113335	-	ABCB6	chr2	220085176	-
intron-intron	ENST00000295633	ENST00000439002		ChiTaRS3.1			R74223	FSTL1	chr3	120113335	-	ABCB6	chr2	220085176	-
intron-intron	ENST00000424703	ENST00000265316		ChiTaRS3.1			R74223	FSTL1	chr3	120113335	-	ABCB6	chr2	220085176	-
intron-intron	ENST00000424703	ENST00000439002		ChiTaRS3.1			R74223	FSTL1	chr3	120113335	-	ABCB6	chr2	220085176	-
intron-intron	ENST00000485968	ENST00000265316		ChiTaRS3.1			R74223	FSTL1	chr3	120113335	-	ABCB6	chr2	220085176	-
intron-intron	ENST00000485968	ENST00000439002		ChiTaRS3.1			R74223	FSTL1	chr3	120113335	-	ABCB6	chr2	220085176	-
intron-3CDS	ENST00000405510	ENST00000255764		ChiTaRS3.1			AY453399	SUN2	chr22	39175441	-	MED10	chr5	6372712	-
intron-3CDS	ENST00000216064	ENST00000255764		ChiTaRS3.1			AY453399	SUN2	chr22	39175441	-	MED10	chr5	6372712	-
intron-3CDS	ENST00000405018	ENST00000255764		ChiTaRS3.1			AY453399	SUN2	chr22	39175441	-	MED10	chr5	6372712	-
intron-3CDS	ENST00000406622	ENST00000255764		ChiTaRS3.1			AY453399	SUN2	chr22	39175441	-	MED10	chr5	6372712	-
intron-3CDS	ENST00000411587	ENST00000255764		ChiTaRS3.1			AY453399	SUN2	chr22	39175441	-	MED10	chr5	6372712	-
intron-intron	ENST00000380516	ENST00000278175		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-5UTR	ENST00000380516	ENST00000534464		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-5UTR	ENST00000380516	ENST00000530439		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000380516	ENST00000524948		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000380516	ENST00000528655		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000380516	ENST00000526492		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000380516	ENST00000525063		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000380516	ENST00000528544		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000536328	ENST00000278175		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-5UTR	ENST00000536328	ENST00000534464		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-5UTR	ENST00000536328	ENST00000530439		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000536328	ENST00000524948		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000536328	ENST00000528655		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000536328	ENST00000526492		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000536328	ENST00000525063		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000536328	ENST00000528544		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000557950	ENST00000278175		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-5UTR	ENST00000557950	ENST00000534464		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-5UTR	ENST00000557950	ENST00000530439		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000557950	ENST00000524948		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000557950	ENST00000528655		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000557950	ENST00000526492		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000557950	ENST00000525063		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-intron	ENST00000557950	ENST00000528544		ChiTaRS3.1			AW452874	SLTM	chr15	59171958	+	ADM	chr11	10327348	-
intron-3CDS	ENST00000563294	ENST00000439351		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000563294	ENST00000265028		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-intron	ENST00000563294	ENST00000538831		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000442196	ENST00000439351		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000442196	ENST00000265028		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-intron	ENST00000442196	ENST00000538831		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000310958	ENST00000439351		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000310958	ENST00000265028		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-intron	ENST00000310958	ENST00000538831		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000425574	ENST00000439351		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000425574	ENST00000265028		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-intron	ENST00000425574	ENST00000538831		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000569205	ENST00000439351		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000569205	ENST00000265028		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-intron	ENST00000569205	ENST00000538831		ChiTaRS3.1			BE925161	CCPG1	chr15	55652573	-	DNAJB11	chr3	186301734	+
intron-3CDS	ENST00000553781	ENST00000402363		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000553781	ENST00000537798		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000553781	ENST00000350030		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000553781	ENST00000372052		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000553781	ENST00000351223		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3UTR	ENST00000553781	ENST00000530073		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000557008	ENST00000402363		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000557008	ENST00000537798		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000557008	ENST00000350030		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000557008	ENST00000372052		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3CDS	ENST00000557008	ENST00000351223		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
intron-3UTR	ENST00000557008	ENST00000530073		ChiTaRS3.1			CA446581	BCL2L2-PABPN1	chr14	23794458	-	NASP	chr1	46080792	-
Frame-shit	ENST00000394434	ENST00000216281		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000394434	ENST00000334701		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000394434	ENST00000441629		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
5CDS-intron	ENST00000394434	ENST00000558600		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000545646	ENST00000216281		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000545646	ENST00000334701		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000545646	ENST00000441629		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
5CDS-intron	ENST00000545646	ENST00000558600		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000274562	ENST00000216281		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000274562	ENST00000334701		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000274562	ENST00000441629		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
5CDS-intron	ENST00000274562	ENST00000558600		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000510191	ENST00000216281		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000510191	ENST00000334701		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
Frame-shit	ENST00000510191	ENST00000441629		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
5CDS-intron	ENST00000510191	ENST00000558600		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
intron-3CDS	ENST00000511505	ENST00000216281		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
intron-3CDS	ENST00000511505	ENST00000334701		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
intron-3CDS	ENST00000511505	ENST00000441629		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
intron-intron	ENST00000511505	ENST00000558600		ChiTaRS3.1			CB999031	LARS	chr5	145524185	-	HSP90AA1	chr14	102551710	-
5CDS-3UTR	ENST00000396253	ENST00000412114		ChiTaRS3.1			DB040105	HPS5	chr11	18330492	-	LINC00264	chr10	26879062	+
5CDS-3UTR	ENST00000349215	ENST00000412114		ChiTaRS3.1			DB040105	HPS5	chr11	18330492	-	LINC00264	chr10	26879062	+
5CDS-3UTR	ENST00000438420	ENST00000412114		ChiTaRS3.1			DB040105	HPS5	chr11	18330492	-	LINC00264	chr10	26879062	+
intron-3UTR	ENST00000537258	ENST00000412114		ChiTaRS3.1			DB040105	HPS5	chr11	18330492	-	LINC00264	chr10	26879062	+
intron-3UTR	ENST00000352460	ENST00000412114		ChiTaRS3.1			DB040105	HPS5	chr11	18330492	-	LINC00264	chr10	26879062	+
5CDS-3UTR	ENST00000531848	ENST00000412114		ChiTaRS3.1			DB040105	HPS5	chr11	18330492	-	LINC00264	chr10	26879062	+
intron-intron	ENST00000384994	ENST00000325642		ChiTaRS3.1			BG485165	NEAT1	chr11	65193452	+	PPM1A	chr14	60754624	+
intron-intron	ENST00000384994	ENST00000529574		ChiTaRS3.1			BG485165	NEAT1	chr11	65193452	+	PPM1A	chr14	60754624	+
intron-intron	ENST00000384994	ENST00000395076		ChiTaRS3.1			BG485165	NEAT1	chr11	65193452	+	PPM1A	chr14	60754624	+
intron-3UTR	ENST00000384994	ENST00000325658		ChiTaRS3.1			BG485165	NEAT1	chr11	65193452	+	PPM1A	chr14	60754624	+
intron-intron	ENST00000398842	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398842	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398842	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398842	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398842	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-intron	ENST00000398809	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398809	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398809	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398809	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398809	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-intron	ENST00000461841	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000461841	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000461841	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000461841	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000461841	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-intron	ENST00000299366	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000299366	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000299366	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000299366	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000299366	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-intron	ENST00000224721	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000224721	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000224721	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000224721	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000224721	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-intron	ENST00000398788	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398788	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398788	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398788	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000398788	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-intron	ENST00000475158	ENST00000537532		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000475158	ENST00000539644		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000475158	ENST00000392404		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000475158	ENST00000538932		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000475158	ENST00000337815		ChiTaRS3.1			AB073653	CDH23	chr10	73518375	-	ZNF664	chr12	124498778	+
intron-3UTR	ENST00000331925	ENST00000356495		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-intron	ENST00000331925	ENST00000487208		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-3UTR	ENST00000573283	ENST00000356495		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-intron	ENST00000573283	ENST00000487208		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-3UTR	ENST00000575842	ENST00000356495		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-intron	ENST00000575842	ENST00000487208		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-3UTR	ENST00000575087	ENST00000356495		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-intron	ENST00000575087	ENST00000487208		ChiTaRS3.1			AW604857	ACTG1	chr17	79477983	-	PIGR	chr1	207103546	-
intron-3CDS	ENST00000233616	ENST00000335295		ChiTaRS3.1			BF899427	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000452063	ENST00000335295		ChiTaRS3.1			BF899427	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000409065	ENST00000335295		ChiTaRS3.1			BF899427	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000462443	ENST00000335295		ChiTaRS3.1			BF899427	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000535045	ENST00000335295		ChiTaRS3.1			BF899427	MOGS	chr2	74688491	-	HBB	chr11	5248183	-
intron-3CDS	ENST00000366767	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366767	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366767	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366767	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366767	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366767	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366767	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000366767	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000366769	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366769	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366769	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366769	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366769	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366769	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366769	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000366769	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000366764	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366764	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366764	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366764	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366764	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366764	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366764	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000366764	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000334218	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000334218	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000334218	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000334218	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000334218	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000334218	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000334218	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000334218	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000366766	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366766	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366766	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366766	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366766	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366766	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366766	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000366766	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000535525	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000535525	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000535525	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000535525	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000535525	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000535525	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000535525	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000535525	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000366765	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366765	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366765	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366765	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366765	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366765	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000366765	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000366765	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-3CDS	ENST00000488131	ENST00000367858		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000488131	ENST00000524929		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000488131	ENST00000413996		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000488131	ENST00000237305		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000488131	ENST00000367857		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000488131	ENST00000528577		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-intron	ENST00000488131	ENST00000475719		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
intron-5UTR	ENST00000488131	ENST00000489458		ChiTaRS3.1			AA370052	CDC42BPA	chr1	227222370	-	SGK1	chr6	134494454	-
3UTR-3CDS	ENST00000331595	ENST00000284984		ChiTaRS3.1			BF437005	BGN	chrX	152774808	-	ADAMTS1	chr21	28209980	+
3UTR-3CDS	ENST00000480756	ENST00000284984		ChiTaRS3.1			BF437005	BGN	chrX	152774808	-	ADAMTS1	chr21	28209980	+
intron-intron	ENST00000346693	ENST00000503585		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000360916		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000295290		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000444671		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000502374		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000538990		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000502938		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000507634		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000346693	ENST00000513459		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000346693	ENST00000508753		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000503585		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000360916		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000295290		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000444671		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000502374		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000538990		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000502938		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000507634		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000370377	ENST00000513459		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000370377	ENST00000508753		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000503585		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000360916		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000295290		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000444671		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000502374		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000538990		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000502938		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000507634		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000355149	ENST00000513459		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000355149	ENST00000508753		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000503585		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000360916		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000295290		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000444671		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000502374		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000538990		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000502938		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000507634		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000437787	ENST00000513459		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000437787	ENST00000508753		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000503585		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000360916		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000295290		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000444671		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000502374		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000538990		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000502938		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000507634		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000466436	ENST00000513459		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000466436	ENST00000508753		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000503585		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000360916		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000295290		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000444671		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000502374		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000538990		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000502938		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000507634		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-intron	ENST00000320893	ENST00000513459		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000320893	ENST00000508753		ChiTaRS3.1			BP219412	CD99L2	chrX	149936332	-	PACRGL	chr4	20703418	+
intron-3UTR	ENST00000541222	ENST00000256682		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-intron	ENST00000541222	ENST00000447318		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-intron	ENST00000541222	ENST00000541959		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-intron	ENST00000541222	ENST00000541967		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-3UTR	ENST00000316856	ENST00000256682		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000316856	ENST00000447318		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000316856	ENST00000541959		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000316856	ENST00000541967		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-3UTR	ENST00000586534	ENST00000256682		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000586534	ENST00000447318		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000586534	ENST00000541959		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000586534	ENST00000541967		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-3UTR	ENST00000592268	ENST00000256682		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000592268	ENST00000447318		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000592268	ENST00000541959		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
3UTR-intron	ENST00000592268	ENST00000541967		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-3UTR	ENST00000588826	ENST00000256682		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-intron	ENST00000588826	ENST00000447318		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-intron	ENST00000588826	ENST00000541959		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-intron	ENST00000588826	ENST00000541967		ChiTaRS3.1			BF509886	RAD23A	chr19	13064281	-	ARF3	chr12	49331931	+
intron-3CDS	ENST00000396594	ENST00000297268		ChiTaRS3.1			AU117634	GNE	chr9	36246411	-	COL1A2	chr7	94058697	+
intron-3CDS	ENST00000539815	ENST00000297268		ChiTaRS3.1			AU117634	GNE	chr9	36246411	-	COL1A2	chr7	94058697	+
intron-3CDS	ENST00000543356	ENST00000297268		ChiTaRS3.1			AU117634	GNE	chr9	36246411	-	COL1A2	chr7	94058697	+
intron-3CDS	ENST00000539208	ENST00000297268		ChiTaRS3.1			AU117634	GNE	chr9	36246411	-	COL1A2	chr7	94058697	+
intron-3CDS	ENST00000447283	ENST00000297268		ChiTaRS3.1			AU117634	GNE	chr9	36246411	-	COL1A2	chr7	94058697	+
intron-3CDS	ENST00000377902	ENST00000297268		ChiTaRS3.1			AU117634	GNE	chr9	36246411	-	COL1A2	chr7	94058697	+
intron-3UTR	ENST00000367201	ENST00000311852		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-intron	ENST00000367201	ENST00000548162		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-3UTR	ENST00000367202	ENST00000311852		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-intron	ENST00000367202	ENST00000548162		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-3UTR	ENST00000367199	ENST00000311852		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-intron	ENST00000367199	ENST00000548162		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-3UTR	ENST00000367198	ENST00000311852		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-intron	ENST00000367198	ENST00000548162		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-3UTR	ENST00000367197	ENST00000311852		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-intron	ENST00000367197	ENST00000548162		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-3UTR	ENST00000477125	ENST00000311852		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
intron-intron	ENST00000477125	ENST00000548162		ChiTaRS3.1			BU624180	ETNK2	chr1	204100544	+	MMP14	chr14	23316109	-
Frame-shit	ENST00000244040	ENST00000595618		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
Frame-shit	ENST00000244040	ENST00000594824		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
Frame-shit	ENST00000244040	ENST00000397274		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
5CDS-intron	ENST00000244040	ENST00000593411		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
3UTR-3CDS	ENST00000488949	ENST00000595618		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
3UTR-3CDS	ENST00000488949	ENST00000594824		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
3UTR-3CDS	ENST00000488949	ENST00000397274		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
3UTR-intron	ENST00000488949	ENST00000593411		ChiTaRS3.1			XX000015	RAB22A	chr20	56886179	+	MYO9B	chr19	17256206	+
intron-5UTR	ENST00000328908	ENST00000335783		ChiTaRS3.1			BC072444	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
5CDS-5UTR	ENST00000397588	ENST00000335783		ChiTaRS3.1			BC072444	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
3UTR-5UTR	ENST00000472453	ENST00000335783		ChiTaRS3.1			BC072444	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
intron-5UTR	ENST00000449732	ENST00000335783		ChiTaRS3.1			BC072444	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
intron-5UTR	ENST00000343762	ENST00000335783		ChiTaRS3.1			BC072444	CDYL	chr6	4777041	+	CENPQ	chr6	49437870	+
intron-intron	ENST00000245441	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000245441	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000245441	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000389868	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000389868	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000389868	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000530997	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000530997	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000530997	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000382043	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000382043	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000382043	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000382041	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000382041	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000382041	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000324330	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000324330	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000324330	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000453196	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000453196	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000453196	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-intron	ENST00000486200	ENST00000392951		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000486200	ENST00000530649		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3UTR	ENST00000486200	ENST00000532870		ChiTaRS3.1			W48800	NIN	chr14	51237151	-	TAGLN	chr11	117075401	+
intron-3CDS	ENST00000234590	ENST00000254719		ChiTaRS3.1			BQ292604	ENO1	chr1	8926394	-	RPA1	chr17	1783837	+
intron-intron	ENST00000234590	ENST00000573924		ChiTaRS3.1			BQ292604	ENO1	chr1	8926394	-	RPA1	chr17	1783837	+
5CDS-5UTR	ENST00000550746	ENST00000261168		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000550746	ENST00000543189		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000550746	ENST00000536444		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000550746	ENST00000544627		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-3UTR	ENST00000550746	ENST00000541654		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000550746	ENST00000540793		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000319106	ENST00000261168		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000319106	ENST00000543189		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000319106	ENST00000536444		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000319106	ENST00000544627		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-3UTR	ENST00000319106	ENST00000541654		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000319106	ENST00000540793		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000485960	ENST00000261168		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000485960	ENST00000543189		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000485960	ENST00000536444		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000485960	ENST00000544627		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-3UTR	ENST00000485960	ENST00000541654		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-5UTR	ENST00000485960	ENST00000540793		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000393309	ENST00000261168		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000393309	ENST00000543189		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000393309	ENST00000536444		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000393309	ENST00000544627		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-3UTR	ENST00000393309	ENST00000541654		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5UTR-5UTR	ENST00000393309	ENST00000540793		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
intron-5UTR	ENST00000548679	ENST00000261168		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
intron-5UTR	ENST00000548679	ENST00000543189		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
intron-5UTR	ENST00000548679	ENST00000536444		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
intron-5UTR	ENST00000548679	ENST00000544627		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
intron-3UTR	ENST00000548679	ENST00000541654		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
intron-5UTR	ENST00000548679	ENST00000540793		ChiTaRS3.1			DB067568	TBC1D15	chr12	72233591	+	ATF7IP	chr12	14576840	+
5CDS-3UTR	ENST00000394243	ENST00000406386		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-intron	ENST00000394243	ENST00000407319		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000394243	ENST00000403663		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000522122	ENST00000406386		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-intron	ENST00000522122	ENST00000407319		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000522122	ENST00000403663		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
intron-3UTR	ENST00000518872	ENST00000406386		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
intron-intron	ENST00000518872	ENST00000407319		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
intron-3UTR	ENST00000518872	ENST00000403663		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000307662	ENST00000406386		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-intron	ENST00000307662	ENST00000407319		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000307662	ENST00000403663		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000519664	ENST00000406386		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-intron	ENST00000519664	ENST00000407319		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
5CDS-3UTR	ENST00000519664	ENST00000403663		ChiTaRS3.1			CB265417	SYNPO	chr5	150029343	+	TRIOBP	chr22	38169889	+
intron-intron	ENST00000426256	ENST00000281882		ChiTaRS3.1			BI438386	RNF185	chr22	31601365	+	CFC1B	chr2	131350520	-
3UTR-intron	ENST00000326132	ENST00000281882		ChiTaRS3.1			BI438386	RNF185	chr22	31601365	+	CFC1B	chr2	131350520	-
3UTR-intron	ENST00000266252	ENST00000281882		ChiTaRS3.1			BI438386	RNF185	chr22	31601365	+	CFC1B	chr2	131350520	-
5UTR-intron	ENST00000311852	ENST00000354577		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-3UTR	ENST00000311852	ENST00000403834		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-3UTR	ENST00000311852	ENST00000368068		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-5UTR	ENST00000311852	ENST00000479213		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-intron	ENST00000311852	ENST00000368060		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-intron	ENST00000311852	ENST00000368058		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-intron	ENST00000311852	ENST00000545957		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-intron	ENST00000311852	ENST00000368053		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-intron	ENST00000311852	ENST00000540546		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
5UTR-intron	ENST00000311852	ENST00000539158		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000354577		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-3UTR	ENST00000548162	ENST00000403834		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-3UTR	ENST00000548162	ENST00000368068		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-5UTR	ENST00000548162	ENST00000479213		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000368060		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000368058		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000545957		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000368053		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000540546		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-intron	ENST00000548162	ENST00000539158		ChiTaRS3.1			CN388362	MMP14	chr14	23305858	+	MED23	chr6	131908317	-
3UTR-3CDS	ENST00000261590	ENST00000283875		ChiTaRS3.1			BF509928	DSG2	chr18	29128650	-	GTF2E1	chr3	120495441	-
intron-3CDS	ENST00000585206	ENST00000283875		ChiTaRS3.1			BF509928	DSG2	chr18	29128650	-	GTF2E1	chr3	120495441	-
Frame-shit	ENST00000377387	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000377387	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000377387	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
Frame-shit	ENST00000377390	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000377390	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000377390	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
Frame-shit	ENST00000377394	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000377394	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000377394	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
Frame-shit	ENST00000227503	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000227503	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000227503	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
Frame-shit	ENST00000334944	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000334944	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000334944	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5UTR-3CDS	ENST00000422298	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5UTR-intron	ENST00000422298	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5UTR-intron	ENST00000422298	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
In-frame	ENST00000433274	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000433274	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
5CDS-intron	ENST00000433274	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
intron-3CDS	ENST00000489544	ENST00000301318		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
intron-intron	ENST00000489544	ENST00000591844		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
intron-intron	ENST00000489544	ENST00000594386		ChiTaRS3.1			BX491432	SF1	chr11	64543969	-	ZFP28	chr19	57065051	+
intron-3CDS	ENST00000275605	ENST00000170564		ChiTaRS3.1			BU633977	PSPH	chr7	56148239	-	GPATCH1	chr19	33605259	-
intron-3CDS	ENST00000395471	ENST00000170564		ChiTaRS3.1			BU633977	PSPH	chr7	56148239	-	GPATCH1	chr19	33605259	-
intron-3CDS	ENST00000459834	ENST00000170564		ChiTaRS3.1			BU633977	PSPH	chr7	56148239	-	GPATCH1	chr19	33605259	-
3UTR-3CDS	ENST00000534336	ENST00000393561		ChiTaRS3.1			BE775142	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-3CDS	ENST00000534336	ENST00000222399		ChiTaRS3.1			BE775142	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-intron	ENST00000534336	ENST00000393560		ChiTaRS3.1			BE775142	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-intron	ENST00000534336	ENST00000474380		ChiTaRS3.1			BE775142	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
In-frame	ENST00000492622	ENST00000327495		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
In-frame	ENST00000492622	ENST00000595140		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
5CDS-intron	ENST00000492622	ENST00000490592		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
In-frame	ENST00000541916	ENST00000327495		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
In-frame	ENST00000541916	ENST00000595140		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
5CDS-intron	ENST00000541916	ENST00000490592		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
In-frame	ENST00000398316	ENST00000327495		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
In-frame	ENST00000398316	ENST00000595140		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
5CDS-intron	ENST00000398316	ENST00000490592		ChiTaRS3.1			DA832291	FNDC3A	chr13	49776072	+	PSG3	chr19	43234172	-
5CDS-intron	ENST00000006777	ENST00000540235		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000006777	ENST00000393930		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000006777	ENST00000393931		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000006777	ENST00000310706		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000318622	ENST00000540235		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000318622	ENST00000393930		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000318622	ENST00000393931		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000318622	ENST00000310706		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
3UTR-intron	ENST00000468304	ENST00000540235		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
3UTR-intron	ENST00000468304	ENST00000393930		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
3UTR-intron	ENST00000468304	ENST00000393931		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
3UTR-intron	ENST00000468304	ENST00000310706		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000428119	ENST00000540235		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000428119	ENST00000393930		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000428119	ENST00000393931		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
5CDS-intron	ENST00000428119	ENST00000310706		ChiTaRS3.1			BE089898	RHBDD2	chr7	75517366	+	JUP	chr17	39915049	-
3UTR-3UTR	ENST00000313965	ENST00000302386		ChiTaRS3.1			BC024251	C2orf57	chr2	232458903	+	GABARAP	chr17	7143927	-
3UTR-3UTR	ENST00000313965	ENST00000577035		ChiTaRS3.1			BC024251	C2orf57	chr2	232458903	+	GABARAP	chr17	7143927	-
3UTR-intron	ENST00000313965	ENST00000571129		ChiTaRS3.1			BC024251	C2orf57	chr2	232458903	+	GABARAP	chr17	7143927	-
3UTR-intron	ENST00000313965	ENST00000571253		ChiTaRS3.1			BC024251	C2orf57	chr2	232458903	+	GABARAP	chr17	7143927	-
3UTR-intron	ENST00000313965	ENST00000573928		ChiTaRS3.1			BC024251	C2orf57	chr2	232458903	+	GABARAP	chr17	7143927	-
3UTR-intron	ENST00000320580	ENST00000381527		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
3UTR-intron	ENST00000320580	ENST00000536792		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
3UTR-intron	ENST00000320580	ENST00000480323		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-intron	ENST00000529757	ENST00000381527		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-intron	ENST00000529757	ENST00000536792		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-intron	ENST00000529757	ENST00000480323		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-intron	ENST00000524815	ENST00000381527		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-intron	ENST00000524815	ENST00000536792		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-intron	ENST00000524815	ENST00000480323		ChiTaRS3.1			M78127	PACS1	chr11	66010802	+	CDK8	chr13	26966520	+
intron-3CDS	ENST00000424085	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000424085	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000424085	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000424085	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000257075	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000257075	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000257075	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000257075	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000373747	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373747	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373747	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373747	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000426105	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000426105	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000426105	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000426105	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000440538	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000440538	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000440538	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000440538	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000373741	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373741	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373741	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373741	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000423018	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000423018	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000423018	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000423018	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000373742	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373742	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373742	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000373742	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000490546	ENST00000356708		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000490546	ENST00000493053		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000490546	ENST00000541227		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3UTR	ENST00000490546	ENST00000335698		ChiTaRS3.1			H12819	PUM1	chr1	31404735	-	ATP5C1	chr10	7844356	+
intron-3CDS	ENST00000367187	ENST00000360839		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-3CDS	ENST00000367187	ENST00000297183		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000367187	ENST00000394723		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000367187	ENST00000394722		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000367187	ENST00000462121		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000367187	ENST00000544120		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-3CDS	ENST00000424712	ENST00000360839		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-3CDS	ENST00000424712	ENST00000297183		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000424712	ENST00000394723		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000424712	ENST00000394722		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000424712	ENST00000462121		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000424712	ENST00000544120		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-3CDS	ENST00000496872	ENST00000360839		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-3CDS	ENST00000496872	ENST00000297183		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000496872	ENST00000394723		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000496872	ENST00000394722		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000496872	ENST00000462121		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-intron	ENST00000496872	ENST00000544120		ChiTaRS3.1			AA481487	PIK3C2B	chr1	204391826	+	ANKHD1	chr5	139908999	-
intron-3CDS	ENST00000272164	ENST00000348943		ChiTaRS3.1			AW369776	WNT9A	chr1	228124068	-	HNRNPM	chr19	8520329	+
intron-3CDS	ENST00000272164	ENST00000325495		ChiTaRS3.1			AW369776	WNT9A	chr1	228124068	-	HNRNPM	chr19	8520329	+
intron-intron	ENST00000272164	ENST00000602219		ChiTaRS3.1			AW369776	WNT9A	chr1	228124068	-	HNRNPM	chr19	8520329	+
In-frame	ENST00000361566	ENST00000304457		ChiTaRS3.1			BG151239	KRT19	chr17	39680395	-	EXOSC10	chr1	11128096	-
In-frame	ENST00000361566	ENST00000376936		ChiTaRS3.1			BG151239	KRT19	chr17	39680395	-	EXOSC10	chr1	11128096	-
5CDS-3UTR	ENST00000361566	ENST00000544779		ChiTaRS3.1			BG151239	KRT19	chr17	39680395	-	EXOSC10	chr1	11128096	-
5CDS-intron	ENST00000361566	ENST00000485606		ChiTaRS3.1			BG151239	KRT19	chr17	39680395	-	EXOSC10	chr1	11128096	-
intron-3UTR	ENST00000417171	ENST00000539115		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000417171	ENST00000379188		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000417171	ENST00000379177		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000417171	ENST00000304543		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000417171	ENST00000459724		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000417171	ENST00000540034		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000417171	ENST00000338565		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000451928	ENST00000539115		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000451928	ENST00000379188		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000451928	ENST00000379177		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000451928	ENST00000304543		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000451928	ENST00000459724		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000451928	ENST00000540034		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000451928	ENST00000338565		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000344770	ENST00000539115		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000344770	ENST00000379188		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000344770	ENST00000379177		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000344770	ENST00000304543		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000344770	ENST00000459724		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000344770	ENST00000540034		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000344770	ENST00000338565		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000465595	ENST00000539115		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000465595	ENST00000379188		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-3UTR	ENST00000465595	ENST00000379177		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000465595	ENST00000304543		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000465595	ENST00000459724		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000465595	ENST00000540034		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
intron-intron	ENST00000465595	ENST00000338565		ChiTaRS3.1			BE961173	PDZK1	chr1	145759253	-	ZFX	chrX	24231239	+
3UTR-3UTR	ENST00000383018	ENST00000509093		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
3UTR-3UTR	ENST00000383018	ENST00000264389		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
3UTR-3UTR	ENST00000383018	ENST00000503682		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
3UTR-3UTR	ENST00000383018	ENST00000511653		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
3UTR-intron	ENST00000383018	ENST00000511708		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
intron-3UTR	ENST00000493672	ENST00000509093		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
intron-3UTR	ENST00000493672	ENST00000264389		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
intron-3UTR	ENST00000493672	ENST00000503682		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
intron-3UTR	ENST00000493672	ENST00000511653		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
intron-intron	ENST00000493672	ENST00000511708		ChiTaRS3.1			BP394128	SNRNP25	chr16	107439	+	COPS4	chr4	83996775	+
intron-3UTR	ENST00000367142	ENST00000284136		ChiTaRS3.1			AA248206	NUCKS1	chr1	205682999	-	SEMA3D	chr7	84628684	-
intron-intron	ENST00000367142	ENST00000444867		ChiTaRS3.1			AA248206	NUCKS1	chr1	205682999	-	SEMA3D	chr7	84628684	-
intron-intron	ENST00000367142	ENST00000484038		ChiTaRS3.1			AA248206	NUCKS1	chr1	205682999	-	SEMA3D	chr7	84628684	-
intron-3UTR	ENST00000464938	ENST00000284136		ChiTaRS3.1			AA248206	NUCKS1	chr1	205682999	-	SEMA3D	chr7	84628684	-
intron-intron	ENST00000464938	ENST00000444867		ChiTaRS3.1			AA248206	NUCKS1	chr1	205682999	-	SEMA3D	chr7	84628684	-
intron-intron	ENST00000464938	ENST00000484038		ChiTaRS3.1			AA248206	NUCKS1	chr1	205682999	-	SEMA3D	chr7	84628684	-
intron-3UTR	ENST00000316403	ENST00000373265		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000316403	ENST00000373264		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-intron	ENST00000316403	ENST00000480353		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000546343	ENST00000373265		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000546343	ENST00000373264		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-intron	ENST00000546343	ENST00000480353		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000560366	ENST00000373265		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000560366	ENST00000373264		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-intron	ENST00000560366	ENST00000480353		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000405140	ENST00000373265		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000405140	ENST00000373264		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-intron	ENST00000405140	ENST00000480353		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000523500	ENST00000373265		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-3UTR	ENST00000523500	ENST00000373264		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
intron-intron	ENST00000523500	ENST00000480353		ChiTaRS3.1			BI003283	CLU	chr8	27457383	-	CDK9	chr9	130552020	+
In-frame	ENST00000316999	ENST00000540320		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000316999	ENST00000400445		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000316999	ENST00000310336		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000316999	ENST00000379939		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000316999	ENST00000537702		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000316999	ENST00000379922		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000316999	ENST00000461581		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370452	ENST00000540320		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370452	ENST00000400445		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370452	ENST00000310336		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370452	ENST00000379939		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000370452	ENST00000537702		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000370452	ENST00000379922		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000370452	ENST00000461581		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370455	ENST00000540320		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370455	ENST00000400445		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370455	ENST00000310336		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000370455	ENST00000379939		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000370455	ENST00000537702		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000370455	ENST00000379922		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000370455	ENST00000461581		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000422334	ENST00000540320		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000422334	ENST00000400445		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000422334	ENST00000310336		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
In-frame	ENST00000422334	ENST00000379939		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000422334	ENST00000537702		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000422334	ENST00000379922		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
5CDS-intron	ENST00000422334	ENST00000461581		ChiTaRS3.1			DR000261	SMAP1	chr6	71377845	+	NBEA	chr13	35864524	+
intron-3UTR	ENST00000295682	ENST00000368090		ChiTaRS3.1			AA215640	KRTCAP2	chr1	155144233	-	PIGM	chr1	159999323	-
intron-3UTR	ENST00000490672	ENST00000368090		ChiTaRS3.1			AA215640	KRTCAP2	chr1	155144233	-	PIGM	chr1	159999323	-
5CDS-intron	ENST00000358372	ENST00000509108		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000358372	ENST00000306193		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000358372	ENST00000504480		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000337387	ENST00000509108		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000337387	ENST00000306193		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
5CDS-intron	ENST00000337387	ENST00000504480		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-intron	ENST00000494513	ENST00000509108		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-intron	ENST00000494513	ENST00000306193		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
intron-intron	ENST00000494513	ENST00000504480		ChiTaRS3.1			BF930048	WTAP	chr6	160169280	+	CBR4	chr4	169917007	-
In-frame	ENST00000477853	ENST00000450485		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000477853	ENST00000333479		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000477853	ENST00000545065		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000477853	ENST00000537348		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-5UTR	ENST00000477853	ENST00000436959		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000477853	ENST00000534995		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000480380	ENST00000450485		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000480380	ENST00000333479		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000480380	ENST00000545065		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000480380	ENST00000537348		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-5UTR	ENST00000480380	ENST00000436959		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000480380	ENST00000534995		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375199	ENST00000450485		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375199	ENST00000333479		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375199	ENST00000545065		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375199	ENST00000537348		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-5UTR	ENST00000375199	ENST00000436959		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375199	ENST00000534995		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375208	ENST00000450485		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
In-frame	ENST00000375208	ENST00000333479		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375208	ENST00000545065		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375208	ENST00000537348		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-5UTR	ENST00000375208	ENST00000436959		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
5CDS-intron	ENST00000375208	ENST00000534995		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000356068	ENST00000450485		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-3CDS	ENST00000356068	ENST00000333479		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000356068	ENST00000545065		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000356068	ENST00000537348		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-5UTR	ENST00000356068	ENST00000436959		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-intron	ENST00000356068	ENST00000534995		ChiTaRS3.1			AA303951	EMC1	chr1	19553807	-	KNTC1	chr12	123097657	+
intron-5UTR	ENST00000555699	ENST00000234590		ChiTaRS3.1			AA157183	LGMN	chr14	93214868	-	ENO1	chr1	8938673	-
intron-5UTR	ENST00000334869	ENST00000234590		ChiTaRS3.1			AA157183	LGMN	chr14	93214868	-	ENO1	chr1	8938673	-
intron-5UTR	ENST00000557434	ENST00000234590		ChiTaRS3.1			AA157183	LGMN	chr14	93214868	-	ENO1	chr1	8938673	-
intron-5UTR	ENST00000393218	ENST00000234590		ChiTaRS3.1			AA157183	LGMN	chr14	93214868	-	ENO1	chr1	8938673	-
intron-5UTR	ENST00000557034	ENST00000234590		ChiTaRS3.1			AA157183	LGMN	chr14	93214868	-	ENO1	chr1	8938673	-
3UTR-3CDS	ENST00000534336	ENST00000296255		ChiTaRS3.1			BM838536	MALAT1	chr11	65271402	+	RPN1	chr3	128345633	-
3UTR-3CDS	ENST00000534336	ENST00000497289		ChiTaRS3.1			BM838536	MALAT1	chr11	65271402	+	RPN1	chr3	128345633	-
3UTR-5UTR	ENST00000534336	ENST00000490166		ChiTaRS3.1			BM838536	MALAT1	chr11	65271402	+	RPN1	chr3	128345633	-
intron-3CDS	ENST00000434013	ENST00000265729		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000434013	ENST00000419179		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000434013	ENST00000490437		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000434013	ENST00000394641		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000434013	ENST00000431660		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000541064	ENST00000265729		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000541064	ENST00000419179		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000541064	ENST00000490437		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000541064	ENST00000394641		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000541064	ENST00000431660		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000555619	ENST00000265729		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000555619	ENST00000419179		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000555619	ENST00000490437		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000555619	ENST00000394641		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000555619	ENST00000431660		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
Frame-shit	ENST00000238633	ENST00000265729		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
Frame-shit	ENST00000238633	ENST00000419179		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
Frame-shit	ENST00000238633	ENST00000490437		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
Frame-shit	ENST00000238633	ENST00000394641		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
Frame-shit	ENST00000238633	ENST00000431660		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000557510	ENST00000265729		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000557510	ENST00000419179		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000557510	ENST00000490437		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000557510	ENST00000394641		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000557510	ENST00000431660		ChiTaRS3.1			AV722305	NPC2	chr14	74946644	-	SRI	chr7	87846479	-
intron-3CDS	ENST00000296318	ENST00000355078		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000296318	ENST00000302763		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000296318	ENST00000518825		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000296318	ENST00000520400		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000296318	ENST00000540387		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000427856	ENST00000355078		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000427856	ENST00000302763		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000427856	ENST00000518825		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000427856	ENST00000520400		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000427856	ENST00000540387		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000320057	ENST00000355078		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000320057	ENST00000302763		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000320057	ENST00000518825		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000320057	ENST00000520400		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000320057	ENST00000540387		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000463523	ENST00000355078		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000463523	ENST00000302763		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000463523	ENST00000518825		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000463523	ENST00000520400		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000463523	ENST00000540387		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000479825	ENST00000355078		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000479825	ENST00000302763		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3CDS	ENST00000479825	ENST00000518825		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000479825	ENST00000520400		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
intron-3UTR	ENST00000479825	ENST00000540387		ChiTaRS3.1			AU125508	IL17RD	chr3	57127564	-	CTNNA1	chr5	138223284	+
3UTR-3UTR	ENST00000493763	ENST00000355797		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000493763	ENST00000375036		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000493763	ENST00000449428		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000493763	ENST00000592148		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000493763	ENST00000585519		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000493763	ENST00000588114		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000493763	ENST00000589082		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-3UTR	ENST00000397415	ENST00000355797		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000397415	ENST00000375036		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000397415	ENST00000449428		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000397415	ENST00000592148		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000397415	ENST00000585519		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000397415	ENST00000588114		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000397415	ENST00000589082		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-3UTR	ENST00000304734	ENST00000355797		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000304734	ENST00000375036		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000304734	ENST00000449428		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000304734	ENST00000592148		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000304734	ENST00000585519		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000304734	ENST00000588114		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000304734	ENST00000589082		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-3UTR	ENST00000424341	ENST00000355797		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000424341	ENST00000375036		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000424341	ENST00000449428		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000424341	ENST00000592148		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000424341	ENST00000585519		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000424341	ENST00000588114		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-intron	ENST00000424341	ENST00000589082		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-3UTR	ENST00000602561	ENST00000355797		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000602561	ENST00000375036		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000602561	ENST00000449428		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000602561	ENST00000592148		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000602561	ENST00000585519		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000602561	ENST00000588114		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
intron-intron	ENST00000602561	ENST00000589082		ChiTaRS3.1			CN277738	RPL7L1	chr6	42854452	+	MXRA7	chr17	74672581	-
3UTR-3UTR	ENST00000309575	ENST00000249806		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
3UTR-intron	ENST00000309575	ENST00000565471		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
3UTR-intron	ENST00000309575	ENST00000418702		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
3UTR-intron	ENST00000309575	ENST00000566347		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
3UTR-intron	ENST00000309575	ENST00000538696		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
3UTR-intron	ENST00000309575	ENST00000564752		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
3UTR-intron	ENST00000309575	ENST00000569336		ChiTaRS3.1			BQ185214	CHST2	chr3	142841558	-	CLN6	chr15	68499350	+
5CDS-5UTR	ENST00000332050	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000332050	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000332050	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000397938	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000397938	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000397938	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000406548	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000406548	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000406548	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000331029	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000331029	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000331029	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000414183	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000414183	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000414183	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000333395	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000333395	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000333395	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000332035	ENST00000338488		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-5UTR	ENST00000332035	ENST00000395097		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
5CDS-intron	ENST00000332035	ENST00000330847		ChiTaRS3.1			S81242	EWSR1	chr22	29683123	+	NR4A3	chr9	102587941	+
Frame-shit	ENST00000394855	ENST00000335255		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000394855	ENST00000529652		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
intron-3CDS	ENST00000489435	ENST00000335255		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
intron-intron	ENST00000489435	ENST00000529652		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
Frame-shit	ENST00000343789	ENST00000335255		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000343789	ENST00000529652		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
Frame-shit	ENST00000394852	ENST00000335255		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000394852	ENST00000529652		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
Frame-shit	ENST00000446172	ENST00000335255		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
5CDS-intron	ENST00000446172	ENST00000529652		ChiTaRS3.1			M94654	DNAJA4	chr15	78572693	+	FOXK2	chr17	80478124	+
intron-intron	ENST00000337147	ENST00000441750		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000337147	ENST00000281513		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000367075	ENST00000441750		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000367075	ENST00000281513		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000392177	ENST00000441750		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000392177	ENST00000281513		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000476189	ENST00000441750		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-intron	ENST00000476189	ENST00000281513		ChiTaRS3.1			BE812261	EZR	chr6	159190368	-	NBAS	chr2	15511301	-
intron-5UTR	ENST00000546373	ENST00000265732		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000546373	ENST00000481551		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000551568	ENST00000265732		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000551568	ENST00000481551		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000338356	ENST00000265732		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000338356	ENST00000481551		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000549691	ENST00000265732		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-5UTR	ENST00000549691	ENST00000481551		ChiTaRS3.1			DA400817	CPM	chr12	69263226	-	RBM48	chr7	92158120	+
intron-3UTR	ENST00000378330	ENST00000375251		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000378330	ENST00000375249		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000378330	ENST00000466976		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000301030	ENST00000375251		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000301030	ENST00000375249		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000301030	ENST00000466976		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000563291	ENST00000375251		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000563291	ENST00000375249		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000563291	ENST00000466976		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000567736	ENST00000375251		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000567736	ENST00000375249		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
intron-3UTR	ENST00000567736	ENST00000466976		ChiTaRS3.1			AK026001	ANKRD11	chr16	89348833	-	HABP4	chr9	99252996	+
5CDS-5UTR	ENST00000398606	ENST00000262193		ChiTaRS3.1			BG978110	GSTP1	chr11	67352713	+	PSMB1	chr6	170862345	-
5CDS-intron	ENST00000398606	ENST00000462957		ChiTaRS3.1			BG978110	GSTP1	chr11	67352713	+	PSMB1	chr6	170862345	-
5CDS-5UTR	ENST00000398603	ENST00000262193		ChiTaRS3.1			BG978110	GSTP1	chr11	67352713	+	PSMB1	chr6	170862345	-
5CDS-intron	ENST00000398603	ENST00000462957		ChiTaRS3.1			BG978110	GSTP1	chr11	67352713	+	PSMB1	chr6	170862345	-
3UTR-5UTR	ENST00000498765	ENST00000262193		ChiTaRS3.1			BG978110	GSTP1	chr11	67352713	+	PSMB1	chr6	170862345	-
3UTR-intron	ENST00000498765	ENST00000462957		ChiTaRS3.1			BG978110	GSTP1	chr11	67352713	+	PSMB1	chr6	170862345	-
intron-intron	ENST00000324093	ENST00000409484		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-intron	ENST00000324093	ENST00000468308		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-3UTR	ENST00000324093	ENST00000321348		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-3UTR	ENST00000324093	ENST00000375252		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-intron	ENST00000393239	ENST00000409484		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-intron	ENST00000393239	ENST00000468308		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-3UTR	ENST00000393239	ENST00000321348		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-3UTR	ENST00000393239	ENST00000375252		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-intron	ENST00000504689	ENST00000409484		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-intron	ENST00000504689	ENST00000468308		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-3UTR	ENST00000504689	ENST00000321348		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-3UTR	ENST00000504689	ENST00000375252		ChiTaRS3.1			CA446678	PLXND1	chr3	129274260	+	CYBRD1	chr2	172412758	-
intron-intron	ENST00000295896	ENST00000530686		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000532965		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000499008		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000501176		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000500662		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000499568		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000502161		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000530313		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-intron	ENST00000295896	ENST00000501663		ChiTaRS3.1			EC562909	C3orf49	chr3	63821986	-	BDNF-AS	chr11	27603596	+
intron-3CDS	ENST00000363840	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363840	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-3CDS	ENST00000365524	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000365524	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-3CDS	ENST00000364822	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364822	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-3CDS	ENST00000363859	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363859	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-3CDS	ENST00000385578	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000385578	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-3CDS	ENST00000363146	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000363146	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-3CDS	ENST00000364084	ENST00000352456		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000595018		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000392006		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000378215		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000602130		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000593587		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000263367		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
intron-intron	ENST00000364084	ENST00000594207		ChiTaRS3.1			DC374592	GAS5	chr1	173834760	-	HNRNPUL1	chr19	41768396	+
5CDS-5UTR	ENST00000354725	ENST00000241651		ChiTaRS3.1			BC006347	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-5UTR	ENST00000467238	ENST00000241651		ChiTaRS3.1			BC006347	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-intron	ENST00000527438	ENST00000602840		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-5UTR	ENST00000527438	ENST00000518127		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000527438	ENST00000520210		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000527438	ENST00000520242		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000527438	ENST00000519487		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000527438	ENST00000284811		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000527438	ENST00000522337		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000527438	ENST00000523815		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000602840		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-5UTR	ENST00000332324	ENST00000518127		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000520210		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000520242		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000519487		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000284811		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000522337		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000332324	ENST00000523815		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000602840		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-5UTR	ENST00000531896	ENST00000518127		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000520210		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000520242		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000519487		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000284811		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000522337		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000531896	ENST00000523815		ChiTaRS3.1			BE734547	DGAT1	chr8	145540746	-	TCEB1	chr8	74884487	-
intron-intron	ENST00000284984	ENST00000406697		ChiTaRS3.1			BP288410	ADAMTS1	chr21	28217251	-	C1S	chr12	7168070	+
intron-5UTR	ENST00000284984	ENST00000328916		ChiTaRS3.1			BP288410	ADAMTS1	chr21	28217251	-	C1S	chr12	7168070	+
intron-5UTR	ENST00000284984	ENST00000360817		ChiTaRS3.1			BP288410	ADAMTS1	chr21	28217251	-	C1S	chr12	7168070	+
intron-5UTR	ENST00000284984	ENST00000402681		ChiTaRS3.1			BP288410	ADAMTS1	chr21	28217251	-	C1S	chr12	7168070	+
intron-intron	ENST00000284984	ENST00000495061		ChiTaRS3.1			BP288410	ADAMTS1	chr21	28217251	-	C1S	chr12	7168070	+
intron-3UTR	ENST00000389394	ENST00000394936		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000389394	ENST00000394934		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000237449	ENST00000394936		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000237449	ENST00000394934		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000398278	ENST00000394936		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000398278	ENST00000394934		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000468661	ENST00000394936		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000468661	ENST00000394934		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000602588	ENST00000394936		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
intron-3UTR	ENST00000602588	ENST00000394934		ChiTaRS3.1			BP430892	DNAH6	chr2	85004658	-	PSAP	chr10	73576601	-
5CDS-3UTR	ENST00000336452	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000336452	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000336452	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000336458	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000336458	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000336458	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000576930	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000576930	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000576930	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000572815	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000572815	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000572815	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000573542	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000573542	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000573542	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000419711	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000419711	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000419711	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000571955	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000571955	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000571955	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-3UTR	ENST00000416016	ENST00000527601		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000416016	ENST00000465995		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
5CDS-5UTR	ENST00000416016	ENST00000536040		ChiTaRS3.1			CN340509	EIF5A	chr17	7213009	+	DNAJC24	chr11	31391414	+
intron-intron	ENST00000519560	ENST00000375068		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000375053		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000347546		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000375062		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000519560	ENST00000218439		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000519560	ENST00000375058		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000519560	ENST00000375060		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000396224		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000519560	ENST00000497484		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000375068		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000375053		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000347546		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000375062		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000332966	ENST00000218439		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000332966	ENST00000375058		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000332966	ENST00000375060		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000396224		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000332966	ENST00000497484		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000375068		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000375053		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000347546		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000375062		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000404867	ENST00000218439		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000404867	ENST00000375058		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000404867	ENST00000375060		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000396224		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000404867	ENST00000497484		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000375068		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000375053		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000347546		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000375062		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000521130	ENST00000218439		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000521130	ENST00000375058		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-5UTR	ENST00000521130	ENST00000375060		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000396224		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
intron-intron	ENST00000521130	ENST00000497484		ChiTaRS3.1			AF320070	SLIT3	chr5	168198322	-	MAGED2	chrX	54834834	+
3UTR-3CDS	ENST00000233735	ENST00000078429		ChiTaRS3.1			BM126025	REG1A	chr2	79350483	-	GNA11	chr19	3119254	-
3UTR-3UTR	ENST00000233735	ENST00000586180		ChiTaRS3.1			BM126025	REG1A	chr2	79350483	-	GNA11	chr19	3119254	-
intron-3CDS	ENST00000338380	ENST00000083182		ChiTaRS3.1			DB024572	SLPI	chr20	43881707	-	APPBP2	chr17	58571858	-
intron-intron	ENST00000338380	ENST00000592995		ChiTaRS3.1			DB024572	SLPI	chr20	43881707	-	APPBP2	chr17	58571858	-
intron-3CDS	ENST00000295324	ENST00000340250		ChiTaRS3.1			AU280154	CDC42EP3	chr2	37873844	-	FSCN1	chr7	5632832	+
intron-3CDS	ENST00000295324	ENST00000382361		ChiTaRS3.1			AU280154	CDC42EP3	chr2	37873844	-	FSCN1	chr7	5632832	+
In-frame	ENST00000316509	ENST00000215909		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
5CDS-3UTR	ENST00000316509	ENST00000489315		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
5UTR-3CDS	ENST00000404970	ENST00000215909		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
5UTR-3UTR	ENST00000404970	ENST00000489315		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
In-frame	ENST00000488857	ENST00000215909		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
5CDS-3UTR	ENST00000488857	ENST00000489315		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
In-frame	ENST00000481878	ENST00000215909		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
5CDS-3UTR	ENST00000481878	ENST00000489315		ChiTaRS3.1			D51537	VAMP2	chr17	8065564	-	LGALS1	chr22	38075753	+
intron-3CDS	ENST00000399075	ENST00000232458		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000399075	ENST00000392692		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000399075	ENST00000427830		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000399075	ENST00000417960		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000399075	ENST00000441497		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000399075	ENST00000540509		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000504110	ENST00000232458		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000504110	ENST00000392692		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000504110	ENST00000427830		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000504110	ENST00000417960		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000504110	ENST00000441497		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
intron-3CDS	ENST00000504110	ENST00000540509		ChiTaRS3.1			DA445867	C4orf3	chr4	120221574	-	ECT2	chr3	172501628	+
3UTR-5UTR	ENST00000370179	ENST00000488498		ChiTaRS3.1			AI417363	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
3UTR-intron	ENST00000370179	ENST00000368243		ChiTaRS3.1			AI417363	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-5UTR	ENST00000370177	ENST00000488498		ChiTaRS3.1			AI417363	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-intron	ENST00000370177	ENST00000368243		ChiTaRS3.1			AI417363	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-5UTR	ENST00000473620	ENST00000488498		ChiTaRS3.1			AI417363	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-intron	ENST00000473620	ENST00000368243		ChiTaRS3.1			AI417363	PPDPF	chr20	62153339	-	C1orf61	chr1	156377273	+
intron-3CDS	ENST00000578844	ENST00000337195		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3CDS	ENST00000578844	ENST00000531469		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3CDS	ENST00000578844	ENST00000494626		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3CDS	ENST00000578844	ENST00000411419		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-intron	ENST00000578844	ENST00000476817		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-intron	ENST00000578844	ENST00000309035		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-intron	ENST00000578844	ENST00000334808		ChiTaRS3.1			AK024316	MIR5095	chr20	55983349	+	CTBP2	chr10	126691954	-
intron-3UTR	ENST00000371142	ENST00000368096		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-3UTR	ENST00000371142	ENST00000368097		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-intron	ENST00000371142	ENST00000478033		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-intron	ENST00000371142	ENST00000320307		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-3UTR	ENST00000490192	ENST00000368096		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-3UTR	ENST00000490192	ENST00000368097		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-intron	ENST00000490192	ENST00000478033		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-intron	ENST00000490192	ENST00000320307		ChiTaRS3.1			BG284831	TM9SF3	chr10	98280950	-	TAGLN2	chr1	159887970	-
intron-3UTR	ENST00000231061	ENST00000380518		ChiTaRS3.1			DV462786	SPARC	chr5	151042263	-	COL2A1	chr12	48367008	-
intron-5UTR	ENST00000231061	ENST00000493991		ChiTaRS3.1			DV462786	SPARC	chr5	151042263	-	COL2A1	chr12	48367008	-
intron-intron	ENST00000231061	ENST00000337299		ChiTaRS3.1			DV462786	SPARC	chr5	151042263	-	COL2A1	chr12	48367008	-
intron-3UTR	ENST00000537849	ENST00000380518		ChiTaRS3.1			DV462786	SPARC	chr5	151042263	-	COL2A1	chr12	48367008	-
intron-5UTR	ENST00000537849	ENST00000493991		ChiTaRS3.1			DV462786	SPARC	chr5	151042263	-	COL2A1	chr12	48367008	-
intron-intron	ENST00000537849	ENST00000337299		ChiTaRS3.1			DV462786	SPARC	chr5	151042263	-	COL2A1	chr12	48367008	-
intron-3UTR	ENST00000319359	ENST00000398514		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-3UTR	ENST00000319359	ENST00000343218		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-intron	ENST00000319359	ENST00000534907		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-intron	ENST00000319359	ENST00000504965		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-3UTR	ENST00000497465	ENST00000398514		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-3UTR	ENST00000497465	ENST00000343218		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-intron	ENST00000497465	ENST00000534907		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-intron	ENST00000497465	ENST00000504965		ChiTaRS3.1			DA783243	ELL3	chr15	44085282	+	DPYSL3	chr5	146773181	-
intron-3CDS	ENST00000453363	ENST00000401783		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-3CDS	ENST00000453363	ENST00000374469		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000453363	ENST00000467821		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000453363	ENST00000302728		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000453363	ENST00000374461		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000453363	ENST00000297826		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-3CDS	ENST00000316193	ENST00000401783		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-3CDS	ENST00000316193	ENST00000374469		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000316193	ENST00000467821		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000316193	ENST00000302728		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000316193	ENST00000374461		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000316193	ENST00000297826		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-3CDS	ENST00000329882	ENST00000401783		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-3CDS	ENST00000329882	ENST00000374469		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000329882	ENST00000467821		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000329882	ENST00000302728		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000329882	ENST00000374461		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
intron-intron	ENST00000329882	ENST00000297826		ChiTaRS3.1			BQ026103	CSH1	chr17	61972318	+	SVEP1	chr9	113170908	+
5UTR-3CDS	ENST00000397933	ENST00000342435		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5UTR-5UTR	ENST00000397933	ENST00000448205		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5UTR-5UTR	ENST00000397933	ENST00000487389		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5UTR-5UTR	ENST00000397933	ENST00000448787		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5UTR-intron	ENST00000397933	ENST00000484560		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
Frame-shit	ENST00000473835	ENST00000342435		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-5UTR	ENST00000473835	ENST00000448205		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-5UTR	ENST00000473835	ENST00000487389		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-5UTR	ENST00000473835	ENST00000448787		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-intron	ENST00000473835	ENST00000484560		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
Frame-shit	ENST00000493598	ENST00000342435		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-5UTR	ENST00000493598	ENST00000448205		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-5UTR	ENST00000493598	ENST00000487389		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-5UTR	ENST00000493598	ENST00000448787		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
5CDS-intron	ENST00000493598	ENST00000484560		ChiTaRS3.1			BF668126	U2SURP	chr3	142720515	+	PLSCR1	chr3	146251339	-
Frame-shit	ENST00000360448	ENST00000352251		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
Frame-shit	ENST00000360448	ENST00000350125		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
5CDS-intron	ENST00000360448	ENST00000484434		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
Frame-shit	ENST00000297239	ENST00000352251		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
Frame-shit	ENST00000297239	ENST00000350125		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
5CDS-intron	ENST00000297239	ENST00000484434		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
5UTR-3CDS	ENST00000367081	ENST00000352251		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
5UTR-3CDS	ENST00000367081	ENST00000350125		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
5UTR-intron	ENST00000367081	ENST00000484434		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
intron-3CDS	ENST00000469735	ENST00000352251		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
intron-3CDS	ENST00000469735	ENST00000350125		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
intron-intron	ENST00000469735	ENST00000484434		ChiTaRS3.1			DA432910	SYTL3	chr6	159086454	+	PROSER1	chr13	39587068	-
5CDS-3UTR	ENST00000549920	ENST00000346178		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549920	ENST00000356638		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549920	ENST00000534779		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549920	ENST00000540933		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549920	ENST00000534422		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-3UTR	ENST00000550645	ENST00000346178		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000550645	ENST00000356638		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000550645	ENST00000534779		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000550645	ENST00000540933		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000550645	ENST00000534422		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-3UTR	ENST00000552588	ENST00000346178		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000552588	ENST00000356638		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000552588	ENST00000534779		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000552588	ENST00000540933		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000552588	ENST00000534422		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-3UTR	ENST00000549273	ENST00000346178		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549273	ENST00000356638		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549273	ENST00000534779		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549273	ENST00000540933		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
5CDS-intron	ENST00000549273	ENST00000534422		ChiTaRS3.1			DW439793	RPL18	chr19	49119986	-	GANAB	chr11	62392381	-
Frame-shit	ENST00000334220	ENST00000338034		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-intron	ENST00000334220	ENST00000395962		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-intron	ENST00000334220	ENST00000426905		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-5UTR	ENST00000334220	ENST00000609345		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-5UTR	ENST00000334220	ENST00000578071		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
Frame-shit	ENST00000334212	ENST00000338034		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-intron	ENST00000334212	ENST00000395962		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-intron	ENST00000334212	ENST00000426905		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-5UTR	ENST00000334212	ENST00000609345		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
5CDS-5UTR	ENST00000334212	ENST00000578071		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
3UTR-3CDS	ENST00000555190	ENST00000338034		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
3UTR-intron	ENST00000555190	ENST00000395962		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
3UTR-intron	ENST00000555190	ENST00000426905		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
3UTR-5UTR	ENST00000555190	ENST00000609345		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
3UTR-5UTR	ENST00000555190	ENST00000578071		ChiTaRS3.1			DA537507	DLST	chr14	75356055	+	ELAC2	chr17	12920440	-
intron-3UTR	ENST00000504734	ENST00000465878		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000504734	ENST00000379655		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000504734	ENST00000445690		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000421376		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000541240		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000540079		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000543930		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000562903		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000539578		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000504734	ENST00000566975		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000415618	ENST00000465878		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000415618	ENST00000379655		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000415618	ENST00000445690		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000421376		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000541240		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000540079		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000543930		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000562903		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000539578		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000415618	ENST00000566975		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-3UTR	ENST00000452673	ENST00000465878		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-3UTR	ENST00000452673	ENST00000379655		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-3UTR	ENST00000452673	ENST00000445690		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000421376		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000541240		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000540079		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000543930		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000562903		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000539578		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000452673	ENST00000566975		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-3UTR	ENST00000247461	ENST00000465878		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-3UTR	ENST00000247461	ENST00000379655		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-3UTR	ENST00000247461	ENST00000445690		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000421376		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000541240		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000540079		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000543930		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000562903		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000539578		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
3UTR-intron	ENST00000247461	ENST00000566975		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000512607	ENST00000465878		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000512607	ENST00000379655		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000512607	ENST00000445690		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000421376		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000541240		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000540079		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000543930		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000562903		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000539578		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000512607	ENST00000566975		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000503126	ENST00000465878		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000503126	ENST00000379655		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3UTR	ENST00000503126	ENST00000445690		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000421376		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000541240		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000540079		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000543930		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000562903		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000539578		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-intron	ENST00000503126	ENST00000566975		ChiTaRS3.1			BM680904	CANX	chr5	179157500	-	KIFC3	chr16	57792333	+
intron-3CDS	ENST00000319622	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000319622	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000319622	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000319622	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000319622	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000319622	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000319622	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000319622	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565184	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565184	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565184	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565184	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565184	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565184	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565184	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565184	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000389093	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000389093	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000389093	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000389093	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000389093	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000389093	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000389093	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000389093	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000335181	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000335181	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000335181	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000335181	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000335181	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000335181	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000335181	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000335181	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568883	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568883	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568883	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568883	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568883	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568883	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568883	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568883	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000449901	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000449901	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000449901	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000449901	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000449901	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000449901	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000449901	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000449901	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565154	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565154	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565154	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000565154	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565154	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565154	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565154	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000565154	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568459	ENST00000319622		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568459	ENST00000565184		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568459	ENST00000389093		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-3CDS	ENST00000568459	ENST00000335181		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568459	ENST00000568883		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568459	ENST00000449901		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568459	ENST00000565154		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-intron	ENST00000568459	ENST00000568459		ChiTaRS3.1			CA771395	PKM	chr15	72502145	-	PKM	chr15	72502023	+
intron-5UTR	ENST00000316509	ENST00000464611		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-3UTR	ENST00000316509	ENST00000331789		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-5UTR	ENST00000404970	ENST00000464611		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-3UTR	ENST00000404970	ENST00000331789		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-5UTR	ENST00000488857	ENST00000464611		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-3UTR	ENST00000488857	ENST00000331789		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-5UTR	ENST00000481878	ENST00000464611		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
intron-3UTR	ENST00000481878	ENST00000331789		ChiTaRS3.1			BI019526	VAMP2	chr17	8066213	-	ACTB	chr7	5567037	-
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BU181798	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412561	-
5CDS-intron	ENST00000374464	ENST00000569045		ChiTaRS3.1			BQ637932	CSGALNACT2	chr10	43651145	+	CDR2	chr16	22357765	-
5CDS-3UTR	ENST00000374464	ENST00000268383		ChiTaRS3.1			BQ637932	CSGALNACT2	chr10	43651145	+	CDR2	chr16	22357765	-
5CDS-intron	ENST00000374466	ENST00000569045		ChiTaRS3.1			BQ637932	CSGALNACT2	chr10	43651145	+	CDR2	chr16	22357765	-
5CDS-3UTR	ENST00000374466	ENST00000268383		ChiTaRS3.1			BQ637932	CSGALNACT2	chr10	43651145	+	CDR2	chr16	22357765	-
intron-intron	ENST00000450873	ENST00000378609		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000450873	ENST00000472614		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000284957	ENST00000378609		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000284957	ENST00000472614		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000439720	ENST00000378609		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000439720	ENST00000472614		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000437078	ENST00000378609		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000437078	ENST00000472614		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000484547	ENST00000378609		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000484547	ENST00000472614		ChiTaRS3.1			DA852189	RABGEF1	chr7	66147245	+	GNB1	chr1	1811343	-
intron-intron	ENST00000496484	ENST00000376406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000376405		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000494654		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000427406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000547874		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000551460		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000547700		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000481026		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000552522		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000420019		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000548112		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000550004		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000548103		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000473187		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000552474		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000420320		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000552263		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000551204		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000549428		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000495325		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000547681		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000449153		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000553048		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000546487		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000553196		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000494715		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000547353		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000383566		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000548827		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000552349		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000550408		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000481547		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000550688		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000440369		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000547047		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000548542		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000548248		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000482029		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000550500		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000435664		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000548433		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-3UTR	ENST00000496484	ENST00000551740		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000467476		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000496484	ENST00000546539		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000376406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000376405		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000494654		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000427406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000547874		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000551460		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000547700		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000481026		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000552522		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000420019		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000548112		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000550004		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000548103		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000473187		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000552474		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000420320		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000552263		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000551204		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000549428		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000495325		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000547681		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000449153		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000553048		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000546487		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000553196		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000494715		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000547353		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000383566		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000548827		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000552349		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000550408		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000481547		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000550688		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000440369		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000547047		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000548542		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000548248		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000482029		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000550500		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000435664		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000548433		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-3UTR	ENST00000253686	ENST00000551740		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000467476		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000253686	ENST00000546539		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000376406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000376405		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000494654		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000427406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000547874		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000551460		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000547700		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000481026		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000552522		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000420019		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000548112		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000550004		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000548103		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000473187		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000552474		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000420320		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000552263		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000551204		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000549428		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000495325		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000547681		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000449153		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000553048		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000546487		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000553196		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000494715		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000547353		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000383566		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000548827		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000552349		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000550408		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000481547		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000550688		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000440369		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000547047		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000548542		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000548248		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000482029		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000550500		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000435664		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000548433		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-3UTR	ENST00000449354	ENST00000551740		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000467476		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000449354	ENST00000546539		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000376406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000376405		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000494654		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000427406		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000547874		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000551460		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000547700		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000481026		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000552522		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000420019		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000548112		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000550004		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000548103		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000473187		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000552474		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000420320		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000552263		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000551204		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000549428		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000495325		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000547681		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000449153		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000553048		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000546487		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000553196		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000494715		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000547353		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000383566		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000548827		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000552349		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000550408		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000481547		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000550688		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000440369		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000547047		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000548542		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000548248		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000482029		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000550500		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000435664		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000548433		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-3UTR	ENST00000444840	ENST00000551740		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000467476		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
intron-intron	ENST00000444840	ENST00000546539		ChiTaRS3.1			DB442566	MRPS25	chr3	15100934	-	MDC1	chr6	2004035	-
Frame-shit	ENST00000212355	ENST00000375482		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
Frame-shit	ENST00000212355	ENST00000416701		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000212355	ENST00000468206		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000212355	ENST00000337352		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000212355	ENST00000538555		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
Frame-shit	ENST00000370399	ENST00000375482		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
Frame-shit	ENST00000370399	ENST00000416701		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000370399	ENST00000468206		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000370399	ENST00000337352		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000370399	ENST00000538555		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
In-frame	ENST00000525962	ENST00000375482		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
In-frame	ENST00000525962	ENST00000416701		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000525962	ENST00000468206		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000525962	ENST00000337352		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000525962	ENST00000538555		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-3CDS	ENST00000468996	ENST00000375482		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-3CDS	ENST00000468996	ENST00000416701		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-intron	ENST00000468996	ENST00000468206		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-intron	ENST00000468996	ENST00000337352		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-intron	ENST00000468996	ENST00000538555		ChiTaRS3.1			BI834312	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-3CDS	ENST00000532456	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000532456	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000532456	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000532456	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000532456	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-intron	ENST00000532456	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000539648	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000539648	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000539648	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000539648	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000539648	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-intron	ENST00000539648	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000528499	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000528499	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000528499	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000528499	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000528499	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-intron	ENST00000528499	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000263574	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000263574	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000263574	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000263574	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000263574	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-intron	ENST00000263574	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000345598	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000345598	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000345598	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000345598	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-3CDS	ENST00000345598	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
intron-intron	ENST00000345598	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000338167	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000338167	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000338167	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000338167	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000338167	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-intron	ENST00000338167	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000278756	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000278756	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000278756	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000278756	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000278756	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-intron	ENST00000278756	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000543137	ENST00000278407		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000543137	ENST00000340687		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000543137	ENST00000378323		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000543137	ENST00000378324		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3CDS	ENST00000543137	ENST00000403558		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-intron	ENST00000543137	ENST00000531605		ChiTaRS3.1			CB162631	APLP2	chr11	130013770	+	SERPING1	chr11	57373594	+
3UTR-3UTR	ENST00000264956	ENST00000546057		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000377162		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-3UTR	ENST00000264956	ENST00000328963		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000535250		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000443520		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000264956	ENST00000541446		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-3UTR	ENST00000382674	ENST00000546057		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000377162		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-3UTR	ENST00000382674	ENST00000328963		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000535250		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000443520		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
3UTR-intron	ENST00000382674	ENST00000541446		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000509451	ENST00000546057		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000377162		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000509451	ENST00000328963		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000535250		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000443520		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000509451	ENST00000541446		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000515113	ENST00000546057		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000377162		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-3UTR	ENST00000515113	ENST00000328963		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000535250		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000443520		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
intron-intron	ENST00000515113	ENST00000541446		ChiTaRS3.1			N39630	EVC	chr4	5814952	+	P2RX7	chr12	121622850	+
5CDS-intron	ENST00000372224	ENST00000409642		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372224	ENST00000409876		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372224	ENST00000409029		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372224	ENST00000450639		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372224	ENST00000498249		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372224	ENST00000280115		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-intron	ENST00000493027	ENST00000409642		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-intron	ENST00000493027	ENST00000409876		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-intron	ENST00000493027	ENST00000409029		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-intron	ENST00000493027	ENST00000450639		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-intron	ENST00000493027	ENST00000498249		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-intron	ENST00000493027	ENST00000280115		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372218	ENST00000409642		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372218	ENST00000409876		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372218	ENST00000409029		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372218	ENST00000450639		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372218	ENST00000498249		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372218	ENST00000280115		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372222	ENST00000409642		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372222	ENST00000409876		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372222	ENST00000409029		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372222	ENST00000450639		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372222	ENST00000498249		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372222	ENST00000280115		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372217	ENST00000409642		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372217	ENST00000409876		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372217	ENST00000409029		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372217	ENST00000450639		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372217	ENST00000498249		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
5CDS-intron	ENST00000372217	ENST00000280115		ChiTaRS3.1			AU123804	KIF2C	chr1	45225989	+	LYPD6B	chr2	150005634	-
intron-3CDS	ENST00000393432	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000393432	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000393432	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000393432	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000393432	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000393432	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000393432	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000442819	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000442819	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000442819	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000442819	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000442819	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000442819	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000442819	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000356731	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000356731	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000356731	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000356731	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000356731	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000356731	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000356731	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000329433	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000329433	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000329433	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000329433	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000329433	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000329433	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000329433	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000510411	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000510411	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000510411	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000510411	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000510411	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000510411	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000510411	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000511300	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000511300	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000511300	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000511300	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000511300	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000511300	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000511300	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000524180	ENST00000393432		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000524180	ENST00000442819		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000524180	ENST00000356731		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000524180	ENST00000329433		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-3CDS	ENST00000524180	ENST00000510411		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000524180	ENST00000511300		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000524180	ENST00000524180		ChiTaRS3.1			AI989461	HNRNPH1	chr5	179041644	-	HNRNPH1	chr5	179046322	+
intron-intron	ENST00000369443	ENST00000228862		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000369443	ENST00000298573		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000369443	ENST00000545864		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000369442	ENST00000228862		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000369442	ENST00000298573		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000369442	ENST00000545864		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000464026	ENST00000228862		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000464026	ENST00000298573		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-intron	ENST00000464026	ENST00000545864		ChiTaRS3.1			BE698859	GDAP2	chr1	118412217	-	DUSP16	chr12	12627489	-
intron-3CDS	ENST00000296525	ENST00000539261		ChiTaRS3.1			BP317842	ASB5	chr4	177136628	-	MGP	chr12	15035177	-
intron-3CDS	ENST00000296525	ENST00000228938		ChiTaRS3.1			BP317842	ASB5	chr4	177136628	-	MGP	chr12	15035177	-
intron-3CDS	ENST00000512254	ENST00000539261		ChiTaRS3.1			BP317842	ASB5	chr4	177136628	-	MGP	chr12	15035177	-
intron-3CDS	ENST00000512254	ENST00000228938		ChiTaRS3.1			BP317842	ASB5	chr4	177136628	-	MGP	chr12	15035177	-
intron-3CDS	ENST00000511879	ENST00000539261		ChiTaRS3.1			BP317842	ASB5	chr4	177136628	-	MGP	chr12	15035177	-
intron-3CDS	ENST00000511879	ENST00000228938		ChiTaRS3.1			BP317842	ASB5	chr4	177136628	-	MGP	chr12	15035177	-
3UTR-intron	ENST00000362003	ENST00000428423		ChiTaRS3.1			BE835063	PCGF3	chr4	760473	+	STAG3L3	chr7	72448304	-
intron-intron	ENST00000400151	ENST00000428423		ChiTaRS3.1			BE835063	PCGF3	chr4	760473	+	STAG3L3	chr7	72448304	-
intron-intron	ENST00000482726	ENST00000428423		ChiTaRS3.1			BE835063	PCGF3	chr4	760473	+	STAG3L3	chr7	72448304	-
intron-intron	ENST00000470161	ENST00000428423		ChiTaRS3.1			BE835063	PCGF3	chr4	760473	+	STAG3L3	chr7	72448304	-
3UTR-intron	ENST00000521023	ENST00000428423		ChiTaRS3.1			BE835063	PCGF3	chr4	760473	+	STAG3L3	chr7	72448304	-
3UTR-intron	ENST00000505655	ENST00000428423		ChiTaRS3.1			BE835063	PCGF3	chr4	760473	+	STAG3L3	chr7	72448304	-
Frame-shit	ENST00000394480	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000394480	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
In-frame	ENST00000557856	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000557856	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000357724	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000357724	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000355254	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000355254	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000360948	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000360948	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000542733	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000542733	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
In-frame	ENST00000558676	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000558676	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
Frame-shit	ENST00000317501	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000317501	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5UTR-3CDS	ENST00000558306	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5UTR-intron	ENST00000558306	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
In-frame	ENST00000540489	ENST00000396373		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-intron	ENST00000540489	ENST00000544715		ChiTaRS3.1			AF125809	NTRK3	chr15	88576088	-	ETV6	chr12	12037379	+
5CDS-5UTR	ENST00000261965	ENST00000308366		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
5CDS-5UTR	ENST00000261965	ENST00000423423		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
5CDS-intron	ENST00000261965	ENST00000549767		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
5CDS-5UTR	ENST00000375669	ENST00000308366		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
5CDS-5UTR	ENST00000375669	ENST00000423423		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
5CDS-intron	ENST00000375669	ENST00000549767		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
intron-5UTR	ENST00000462580	ENST00000308366		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
intron-5UTR	ENST00000462580	ENST00000423423		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
intron-intron	ENST00000462580	ENST00000549767		ChiTaRS3.1			BP323855	TUBGCP3	chr13	113158346	-	PLA2G1B	chr12	120765582	-
intron-3CDS	ENST00000254908	ENST00000216465		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000361389		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000554279		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000557639		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000349555		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000556627		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000254908	ENST00000557053		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000393734		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000254908	ENST00000553586		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-3CDS	ENST00000512783	ENST00000216465		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000361389		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000554279		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000557639		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000349555		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000556627		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000512783	ENST00000557053		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000393734		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000512783	ENST00000553586		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-3CDS	ENST00000510013	ENST00000216465		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000361389		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000554279		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000557639		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000349555		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000556627		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-intron	ENST00000510013	ENST00000557053		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000393734		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-5UTR	ENST00000510013	ENST00000553586		ChiTaRS3.1			BM820517	PCBD2	chr5	134260240	-	GSTZ1	chr14	77791211	+
intron-3UTR	ENST00000372422	ENST00000367511		ChiTaRS3.1			BU623888	YIPF3	chr6	43479773	+	FAM129A	chr1	184761268	+
intron-intron	ENST00000372422	ENST00000487074		ChiTaRS3.1			BU623888	YIPF3	chr6	43479773	+	FAM129A	chr1	184761268	+
intron-3UTR	ENST00000506469	ENST00000367511		ChiTaRS3.1			BU623888	YIPF3	chr6	43479773	+	FAM129A	chr1	184761268	+
intron-intron	ENST00000506469	ENST00000487074		ChiTaRS3.1			BU623888	YIPF3	chr6	43479773	+	FAM129A	chr1	184761268	+
intron-3UTR	ENST00000412553	ENST00000358155		ChiTaRS3.1			BC066946	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-intron	ENST00000412553	ENST00000367733		ChiTaRS3.1			BC066946	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-intron	ENST00000412553	ENST00000355305		ChiTaRS3.1			BC066946	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-3UTR	ENST00000412553	ENST00000367731		ChiTaRS3.1			BC066946	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-intron	ENST00000412553	ENST00000520906		ChiTaRS3.1			BC066946	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			AW993965	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
In-frame	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
In-frame	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
5CDS-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF492831	AFF1	chr4	87968752	+	KMT2A	chr11	118359327	+
intron-3CDS	ENST00000390548	ENST00000307961		ChiTaRS3.1			AW169719	IGHG1	chr22	23248839	-	RPL4	chr15	66791795	+
intron-3CDS	ENST00000390548	ENST00000568588		ChiTaRS3.1			AW169719	IGHG1	chr22	23248839	-	RPL4	chr15	66791795	+
intron-intron	ENST00000390548	ENST00000564517		ChiTaRS3.1			AW169719	IGHG1	chr22	23248839	-	RPL4	chr15	66791795	+
intron-intron	ENST00000384994	ENST00000390548		ChiTaRS3.1			CB053703	NEAT1	chr11	65192009	+	IGHG1	chr22	23237692	+
intron-3CDS	ENST00000369426	ENST00000389131		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-intron	ENST00000369426	ENST00000518472		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-3CDS	ENST00000235521	ENST00000389131		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-intron	ENST00000235521	ENST00000518472		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-3CDS	ENST00000537870	ENST00000389131		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-intron	ENST00000537870	ENST00000518472		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-3CDS	ENST00000497761	ENST00000389131		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
intron-intron	ENST00000497761	ENST00000518472		ChiTaRS3.1			DA579087	WARS2	chr1	119683276	+	LOXL2	chr8	23198691	-
Frame-shit	ENST00000245907	ENST00000543196		ChiTaRS3.1			AK225124	C3	chr19	6714364	-	GALNT6	chr12	51758061	-
Frame-shit	ENST00000245907	ENST00000356317		ChiTaRS3.1			AK225124	C3	chr19	6714364	-	GALNT6	chr12	51758061	-
5CDS-intron	ENST00000245907	ENST00000603203		ChiTaRS3.1			AK225124	C3	chr19	6714364	-	GALNT6	chr12	51758061	-
intron-3CDS	ENST00000599668	ENST00000543196		ChiTaRS3.1			AK225124	C3	chr19	6714364	-	GALNT6	chr12	51758061	-
intron-3CDS	ENST00000599668	ENST00000356317		ChiTaRS3.1			AK225124	C3	chr19	6714364	-	GALNT6	chr12	51758061	-
intron-intron	ENST00000599668	ENST00000603203		ChiTaRS3.1			AK225124	C3	chr19	6714364	-	GALNT6	chr12	51758061	-
intron-3CDS	ENST00000311234	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000311234	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000311234	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000311234	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000398119	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000398119	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000398119	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000398119	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000497989	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000497989	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000497989	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000497989	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000425000	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000425000	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000425000	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000425000	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000490542	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000490542	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000490542	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000490542	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000463928	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000463928	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000463928	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000463928	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000420668	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000420668	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000420668	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000420668	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000491723	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000491723	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000491723	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000491723	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000442263	ENST00000457424		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-3CDS	ENST00000442263	ENST00000426172		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000442263	ENST00000503780		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000442263	ENST00000296519		ChiTaRS3.1			CR736962	INTS6	chr13	52028465	+	CEP44	chr4	175252629	+
intron-intron	ENST00000356239	ENST00000356239		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000358100		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000359028		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000394564		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000356239		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000358100		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000359028		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000394564		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000356239		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000358100		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000359028		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000394564		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000356239		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000358100		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000359028		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000394564		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000356239		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000358100		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000359028		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000394564		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BM685013	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-3CDS	ENST00000215832	ENST00000320580		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000215832	ENST00000529757		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000215832	ENST00000524815		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000398822	ENST00000320580		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000398822	ENST00000529757		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000398822	ENST00000524815		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000544786	ENST00000320580		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000544786	ENST00000529757		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000544786	ENST00000524815		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000491588	ENST00000320580		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000491588	ENST00000529757		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-intron	ENST00000491588	ENST00000524815		ChiTaRS3.1			CF121607	MAPK1	chr22	22116322	-	PACS1	chr11	66002824	+
intron-3CDS	ENST00000316292	ENST00000433700		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000316292	ENST00000443698		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000316292	ENST00000380062		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-intron	ENST00000316292	ENST00000429045		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000491404	ENST00000433700		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000491404	ENST00000443698		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000491404	ENST00000380062		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-intron	ENST00000491404	ENST00000429045		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000309268	ENST00000433700		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000309268	ENST00000443698		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000309268	ENST00000380062		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-intron	ENST00000309268	ENST00000429045		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000331523	ENST00000433700		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000331523	ENST00000443698		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-3CDS	ENST00000331523	ENST00000380062		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
intron-intron	ENST00000331523	ENST00000429045		ChiTaRS3.1			BG113553	EEF1A1	chr6	74229157	-	IFT74	chr9	27056333	+
3UTR-intron	ENST00000537532	ENST00000543760		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
3UTR-3UTR	ENST00000537532	ENST00000366672		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
3UTR-intron	ENST00000537532	ENST00000541865		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
3UTR-3UTR	ENST00000537532	ENST00000485438		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000539644	ENST00000543760		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000539644	ENST00000366672		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000539644	ENST00000541865		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000539644	ENST00000485438		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000392404	ENST00000543760		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000392404	ENST00000366672		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000392404	ENST00000541865		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000392404	ENST00000485438		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000538932	ENST00000543760		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000538932	ENST00000366672		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000538932	ENST00000541865		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000538932	ENST00000485438		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000337815	ENST00000543760		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000337815	ENST00000366672		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-intron	ENST00000337815	ENST00000541865		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5UTR-3UTR	ENST00000337815	ENST00000485438		ChiTaRS3.1			BJ995070	ZNF664	chr12	124458467	+	GALNT2	chr1	230416045	+
5CDS-3UTR	ENST00000305877	ENST00000318560		ChiTaRS3.1			AF533988	BCR	chr22	23596172	+	ABL1	chr9	133762357	+
5CDS-3UTR	ENST00000359540	ENST00000318560		ChiTaRS3.1			AF533988	BCR	chr22	23596172	+	ABL1	chr9	133762357	+
intron-3UTR	ENST00000398512	ENST00000318560		ChiTaRS3.1			AF533988	BCR	chr22	23596172	+	ABL1	chr9	133762357	+
intron-3UTR	ENST00000436990	ENST00000318560		ChiTaRS3.1			AF533988	BCR	chr22	23596172	+	ABL1	chr9	133762357	+
intron-3CDS	ENST00000373313	ENST00000302313		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000373313	ENST00000418020		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000373313	ENST00000544962		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000373313	ENST00000396258		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3UTR	ENST00000373313	ENST00000466405		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000302313		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000418020		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000544962		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3CDS	ENST00000396967	ENST00000396258		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3UTR	ENST00000396967	ENST00000466405		ChiTaRS3.1			DA693139	MAFB	chr20	39317553	-	WDR48	chr3	39133141	+
intron-3UTR	ENST00000380121	ENST00000382582		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000380121	ENST00000355994		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000380121	ENST00000397875		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000380121	ENST00000397866		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000380121	ENST00000397865		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000527041		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000359645		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000528160		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000397869		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000354542		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000526111		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000580402		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000579129		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000578193		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000397863		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000397860		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000380121	ENST00000487778		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000504114	ENST00000382582		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000504114	ENST00000355994		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000504114	ENST00000397875		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000504114	ENST00000397866		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000504114	ENST00000397865		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000527041		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000359645		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000528160		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000397869		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000354542		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000526111		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000580402		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000579129		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000578193		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000397863		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000397860		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000504114	ENST00000487778		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000357505	ENST00000382582		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000357505	ENST00000355994		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000357505	ENST00000397875		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000357505	ENST00000397866		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000357505	ENST00000397865		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000527041		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000359645		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000528160		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000397869		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000354542		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000526111		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000580402		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000579129		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000578193		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000397863		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000397860		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000357505	ENST00000487778		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000399396	ENST00000382582		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000399396	ENST00000355994		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000399396	ENST00000397875		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000399396	ENST00000397866		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000399396	ENST00000397865		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000527041		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000359645		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000528160		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000397869		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000354542		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000526111		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000580402		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000579129		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000578193		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000397863		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000397860		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000399396	ENST00000487778		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000446957	ENST00000382582		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000446957	ENST00000355994		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000446957	ENST00000397875		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000446957	ENST00000397866		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000446957	ENST00000397865		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000527041		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000359645		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000528160		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000397869		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000354542		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000526111		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000580402		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000579129		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000578193		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000397863		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000397860		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000446957	ENST00000487778		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000267068	ENST00000382582		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000267068	ENST00000355994		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000267068	ENST00000397875		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000267068	ENST00000397866		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000267068	ENST00000397865		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000527041		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000359645		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000528160		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000397869		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000354542		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000526111		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000580402		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000579129		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000578193		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000397863		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000397860		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-intron	ENST00000267068	ENST00000487778		ChiTaRS3.1			AK125067	N4BP2L2	chr13	33006968	-	MBP	chr18	74691001	-
intron-3UTR	ENST00000370818	ENST00000257290		ChiTaRS3.1			AI468457	GPC3	chrX	132669971	+	PDGFRA	chr4	55163459	-
intron-intron	ENST00000370818	ENST00000508170		ChiTaRS3.1			AI468457	GPC3	chrX	132669971	+	PDGFRA	chr4	55163459	-
intron-3UTR	ENST00000394299	ENST00000257290		ChiTaRS3.1			AI468457	GPC3	chrX	132669971	+	PDGFRA	chr4	55163459	-
intron-intron	ENST00000394299	ENST00000508170		ChiTaRS3.1			AI468457	GPC3	chrX	132669971	+	PDGFRA	chr4	55163459	-
intron-3UTR	ENST00000543339	ENST00000257290		ChiTaRS3.1			AI468457	GPC3	chrX	132669971	+	PDGFRA	chr4	55163459	-
intron-intron	ENST00000543339	ENST00000508170		ChiTaRS3.1			AI468457	GPC3	chrX	132669971	+	PDGFRA	chr4	55163459	-
3UTR-3UTR	ENST00000263734	ENST00000262188		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
3UTR-3UTR	ENST00000263734	ENST00000392811		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
3UTR-3UTR	ENST00000263734	ENST00000356800		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
3UTR-intron	ENST00000263734	ENST00000477169		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
intron-3UTR	ENST00000467888	ENST00000262188		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
intron-3UTR	ENST00000467888	ENST00000392811		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
intron-3UTR	ENST00000467888	ENST00000356800		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
intron-intron	ENST00000467888	ENST00000477169		ChiTaRS3.1			CA427258	EPAS1	chr2	46613570	-	SMARCD3	chr7	150936172	+
Frame-shit	ENST00000274867	ENST00000206423		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000274867	ENST00000439685		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
5CDS-intron	ENST00000274867	ENST00000475181		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000398904	ENST00000206423		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000398904	ENST00000439685		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
5CDS-intron	ENST00000398904	ENST00000475181		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000538976	ENST00000206423		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000538976	ENST00000439685		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
5CDS-intron	ENST00000538976	ENST00000475181		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000405961	ENST00000206423		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000405961	ENST00000439685		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-intron	ENST00000405961	ENST00000475181		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000494405	ENST00000206423		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000494405	ENST00000439685		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-intron	ENST00000494405	ENST00000475181		ChiTaRS3.1			AX747160	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-intron	ENST00000264538	ENST00000507951		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000264538	ENST00000509242		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000264538	ENST00000556177		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000264538	ENST00000261532		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000264538	ENST00000380887		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000468021	ENST00000507951		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000468021	ENST00000509242		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000468021	ENST00000556177		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000468021	ENST00000261532		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000468021	ENST00000380887		ChiTaRS3.1			AF094517	IFT57	chr3	107885751	-	ESRRB	chr14	76837724	+
intron-intron	ENST00000264156	ENST00000441750		ChiTaRS3.1			BP228918	MCM6	chr2	136627866	-	NBAS	chr2	15476039	-
intron-intron	ENST00000264156	ENST00000281513		ChiTaRS3.1			BP228918	MCM6	chr2	136627866	-	NBAS	chr2	15476039	-
intron-intron	ENST00000492091	ENST00000441750		ChiTaRS3.1			BP228918	MCM6	chr2	136627866	-	NBAS	chr2	15476039	-
intron-intron	ENST00000492091	ENST00000281513		ChiTaRS3.1			BP228918	MCM6	chr2	136627866	-	NBAS	chr2	15476039	-
intron-3UTR	ENST00000324589	ENST00000324589		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000349752		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000406653		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000356174		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000420311		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000324589	ENST00000486564		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000324589		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000349752		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000406653		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000356174		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000420311		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000349752	ENST00000486564		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000324589		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000349752		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000406653		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000356174		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000420311		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000406653	ENST00000486564		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000324589		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000349752		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000406653		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000356174		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000420311		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000356174	ENST00000486564		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000324589		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000349752		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000406653		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000356174		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000420311		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000420311	ENST00000486564		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000324589		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000349752		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000406653		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000356174		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000420311		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000486564	ENST00000486564		ChiTaRS3.1			BU676719	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3CDS	ENST00000375217	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375217	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375217	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375217	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375226	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375226	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375226	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375226	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375267	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375267	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375267	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375267	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375254	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375254	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375254	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375254	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375225	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375225	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375225	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375225	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000429347	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000429347	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000429347	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000429347	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375224	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375224	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375224	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375224	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000543981	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000543981	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000543981	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000543981	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000467272	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000467272	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000467272	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000467272	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375218	ENST00000358807		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375218	ENST00000358577		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-3CDS	ENST00000375218	ENST00000368952		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
intron-intron	ENST00000375218	ENST00000483856		ChiTaRS3.1			BE836987	UBR4	chr1	19411041	-	MICAL1	chr6	109767585	-
Frame-shit	ENST00000361417	ENST00000392951		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000361417	ENST00000530649		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000361417	ENST00000532870		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000356063	ENST00000392951		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000356063	ENST00000530649		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000356063	ENST00000532870		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
3UTR-3CDS	ENST00000534672	ENST00000392951		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
3UTR-3CDS	ENST00000534672	ENST00000530649		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
3UTR-3CDS	ENST00000534672	ENST00000532870		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
In-frame	ENST00000527898	ENST00000392951		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
In-frame	ENST00000527898	ENST00000530649		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000527898	ENST00000532870		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
In-frame	ENST00000524713	ENST00000392951		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
In-frame	ENST00000524713	ENST00000530649		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
Frame-shit	ENST00000524713	ENST00000532870		ChiTaRS3.1			AW352228	PHLDB1	chr11	118527495	+	TAGLN	chr11	117074987	+
intron-3UTR	ENST00000347230	ENST00000372811		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-intron	ENST00000347230	ENST00000420632		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000347230	ENST00000372809		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000347230	ENST00000480630		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000557306	ENST00000372811		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-intron	ENST00000557306	ENST00000420632		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000557306	ENST00000372809		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000557306	ENST00000480630		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000555452	ENST00000372811		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-intron	ENST00000555452	ENST00000420632		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000555452	ENST00000372809		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
intron-3UTR	ENST00000555452	ENST00000480630		ChiTaRS3.1			AK308233	ZFYVE26	chr14	68264439	-	MFSD2A	chr1	40435454	+
3UTR-3CDS	ENST00000534336	ENST00000414773		ChiTaRS3.1			BU568984	MALAT1	chr11	65267423	+	CLGN	chr4	141313408	-
3UTR-3CDS	ENST00000534336	ENST00000325617		ChiTaRS3.1			BU568984	MALAT1	chr11	65267423	+	CLGN	chr4	141313408	-
3UTR-3CDS	ENST00000534336	ENST00000537281		ChiTaRS3.1			BU568984	MALAT1	chr11	65267423	+	CLGN	chr4	141313408	-
intron-3UTR	ENST00000599470	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
intron-3UTR	ENST00000599470	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000321944	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000321944	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000358301	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000358301	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
intron-3UTR	ENST00000597766	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
intron-3UTR	ENST00000597766	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000593690	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000593690	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000599386	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000599386	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000435673	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000435673	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000360442	ENST00000272462		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
3UTR-3UTR	ENST00000360442	ENST00000427178		ChiTaRS3.1			BQ016010	PAK4	chr19	39669993	-	MALL	chr2	110842708	+
5CDS-3UTR	ENST00000262319	ENST00000389501		ChiTaRS3.1			AK294283	TELO2	chr16	1552763	+	SMYD5	chr2	73453744	+
5CDS-intron	ENST00000262319	ENST00000474652		ChiTaRS3.1			AK294283	TELO2	chr16	1552763	+	SMYD5	chr2	73453744	+
3UTR-3UTR	ENST00000564507	ENST00000389501		ChiTaRS3.1			AK294283	TELO2	chr16	1552763	+	SMYD5	chr2	73453744	+
3UTR-intron	ENST00000564507	ENST00000474652		ChiTaRS3.1			AK294283	TELO2	chr16	1552763	+	SMYD5	chr2	73453744	+
3UTR-3UTR	ENST00000276603	ENST00000228506		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000412616		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276603	ENST00000535413		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-3UTR	ENST00000276602	ENST00000228506		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000412616		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
3UTR-intron	ENST00000276602	ENST00000535413		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-3UTR	ENST00000520783	ENST00000228506		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000412616		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000520783	ENST00000535413		ChiTaRS3.1			AI825089	TERF1	chr8	73958605	-	MLEC	chr12	121135651	-
intron-intron	ENST00000459639	ENST00000371882		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000371876		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000371878		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000262820		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000539496		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000545703		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000540167		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000541812		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000459639	ENST00000469946		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000371882		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000371876		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000371878		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000262820		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000539496		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000545703		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000540167		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000541812		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000380276	ENST00000469946		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000371882		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000371876		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000371878		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000262820		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000539496		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000545703		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000540167		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000541812		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000291552	ENST00000469946		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000371882		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000371876		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000371878		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000262820		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000539496		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000545703		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000540167		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000541812		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000398137	ENST00000469946		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000371882		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000371876		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000371878		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000262820		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000539496		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000545703		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000540167		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000541812		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-intron	ENST00000486519	ENST00000469946		ChiTaRS3.1			BM679107	U2AF1	chr21	44514654	+	KLHL13	chrX	117060314	+
intron-3CDS	ENST00000367462	ENST00000256854		ChiTaRS3.1			BP424521	BRINP3	chr1	190169607	-	NARS	chr18	55274417	-
intron-3CDS	ENST00000367462	ENST00000423481		ChiTaRS3.1			BP424521	BRINP3	chr1	190169607	-	NARS	chr18	55274417	-
intron-3CDS	ENST00000534846	ENST00000256854		ChiTaRS3.1			BP424521	BRINP3	chr1	190169607	-	NARS	chr18	55274417	-
intron-3CDS	ENST00000534846	ENST00000423481		ChiTaRS3.1			BP424521	BRINP3	chr1	190169607	-	NARS	chr18	55274417	-
intron-3CDS	ENST00000463404	ENST00000256854		ChiTaRS3.1			BP424521	BRINP3	chr1	190169607	-	NARS	chr18	55274417	-
intron-3CDS	ENST00000463404	ENST00000423481		ChiTaRS3.1			BP424521	BRINP3	chr1	190169607	-	NARS	chr18	55274417	-
intron-3UTR	ENST00000421182	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000357867	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000323926	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000336916	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000354785	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000357009	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000346544	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000345488	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000359671	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000446046	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000443816	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000432072	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000356005	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000490833	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3UTR	ENST00000426059	ENST00000307630		ChiTaRS3.1			T95736	FN1	chr2	216243910	-	YWHAG	chr7	75956211	-
intron-3CDS	ENST00000216185	ENST00000400324		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-3CDS	ENST00000216185	ENST00000400330		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000216185	ENST00000400319		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000216185	ENST00000400320		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000216185	ENST00000377908		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000216185	ENST00000267215		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000216185	ENST00000465066		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-3CDS	ENST00000416967	ENST00000400324		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-3CDS	ENST00000416967	ENST00000400330		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000416967	ENST00000400319		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000416967	ENST00000400320		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000416967	ENST00000377908		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000416967	ENST00000267215		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000416967	ENST00000465066		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-3CDS	ENST00000487725	ENST00000400324		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-3CDS	ENST00000487725	ENST00000400330		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000487725	ENST00000400319		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000487725	ENST00000400320		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000487725	ENST00000377908		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000487725	ENST00000267215		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000487725	ENST00000465066		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
Frame-shit	ENST00000403313	ENST00000400324		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
Frame-shit	ENST00000403313	ENST00000400330		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
5CDS-intron	ENST00000403313	ENST00000400319		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
5CDS-intron	ENST00000403313	ENST00000400320		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
5CDS-intron	ENST00000403313	ENST00000377908		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
5CDS-intron	ENST00000403313	ENST00000267215		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
5CDS-intron	ENST00000403313	ENST00000465066		ChiTaRS3.1			AW665284	TXN2	chr22	36863639	+	DIAPH3	chr13	60686261	+
intron-intron	ENST00000476233	ENST00000481781		ChiTaRS3.1			CB218604	HNRNPA2B1	chr7	26236608	-	INS-IGF2	chr11	2150446	-
intron-intron	ENST00000476233	ENST00000397270		ChiTaRS3.1			CB218604	HNRNPA2B1	chr7	26236608	-	INS-IGF2	chr11	2150446	-
intron-intron	ENST00000354667	ENST00000481781		ChiTaRS3.1			CB218604	HNRNPA2B1	chr7	26236608	-	INS-IGF2	chr11	2150446	-
intron-intron	ENST00000354667	ENST00000397270		ChiTaRS3.1			CB218604	HNRNPA2B1	chr7	26236608	-	INS-IGF2	chr11	2150446	-
intron-intron	ENST00000356674	ENST00000481781		ChiTaRS3.1			CB218604	HNRNPA2B1	chr7	26236608	-	INS-IGF2	chr11	2150446	-
intron-intron	ENST00000356674	ENST00000397270		ChiTaRS3.1			CB218604	HNRNPA2B1	chr7	26236608	-	INS-IGF2	chr11	2150446	-
intron-3CDS	ENST00000383737	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000383737	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000395734	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000395734	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000426837	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000426837	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000360240	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000360240	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000439356	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000439356	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000264724	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000264724	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000420772	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000420772	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000441748	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000441748	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000462206	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000462206	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000434267	ENST00000372555		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000434267	ENST00000372557		ChiTaRS3.1			BX649077	MAP4	chr3	47952553	-	TNNC2	chr20	44453173	-
intron-3CDS	ENST00000310441	ENST00000370634		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3UTR	ENST00000310441	ENST00000470358		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3CDS	ENST00000369984	ENST00000370634		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3UTR	ENST00000369984	ENST00000470358		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3CDS	ENST00000354233	ENST00000370634		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3UTR	ENST00000354233	ENST00000470358		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3CDS	ENST00000461098	ENST00000370634		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3UTR	ENST00000461098	ENST00000470358		ChiTaRS3.1			H12693	HCFC1	chrX	153221743	-	VGLL1	chrX	135638667	+
intron-3CDS	ENST00000465343	ENST00000265631		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
intron-3CDS	ENST00000465343	ENST00000416240		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
intron-3CDS	ENST00000465343	ENST00000542654		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
intron-intron	ENST00000465343	ENST00000494085		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
Frame-shit	ENST00000355095	ENST00000265631		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
Frame-shit	ENST00000355095	ENST00000416240		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
Frame-shit	ENST00000355095	ENST00000542654		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
5CDS-intron	ENST00000355095	ENST00000494085		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
Frame-shit	ENST00000423484	ENST00000265631		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
Frame-shit	ENST00000423484	ENST00000416240		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
Frame-shit	ENST00000423484	ENST00000542654		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
5CDS-intron	ENST00000423484	ENST00000494085		ChiTaRS3.1			DA535064	ZNF736	chr7	63774531	+	SLC25A13	chr7	95838290	-
intron-3CDS	ENST00000355349	ENST00000421745		ChiTaRS3.1			AA093963	MYH7	chr14	23899089	-	BIRC6	chr2	32836513	+
Frame-shit	ENST00000273853	ENST00000514888		ChiTaRS3.1			DC389672	CENPC	chr4	68405556	-	PAICS	chr4	57325536	+
In-frame	ENST00000273853	ENST00000264221		ChiTaRS3.1			DC389672	CENPC	chr4	68405556	-	PAICS	chr4	57325536	+
Frame-shit	ENST00000273853	ENST00000399688		ChiTaRS3.1			DC389672	CENPC	chr4	68405556	-	PAICS	chr4	57325536	+
In-frame	ENST00000273853	ENST00000512576		ChiTaRS3.1			DC389672	CENPC	chr4	68405556	-	PAICS	chr4	57325536	+
intron-intron	ENST00000563594	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563594	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000268676	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000569453	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000418391	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000567874	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000570182	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563795	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000532456		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000539648		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000528499		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000263574		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000345598		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000338167		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000278756		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000563848	ENST00000543137		ChiTaRS3.1			CB528318	DEF8	chr16	90023920	-	APLP2	chr11	130011849	-
intron-intron	ENST00000372725	ENST00000536223		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372725	ENST00000488136		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372725	ENST00000442371		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372725	ENST00000444201		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372725	ENST00000376730		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372724	ENST00000536223		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372724	ENST00000488136		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372724	ENST00000442371		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372724	ENST00000444201		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372724	ENST00000376730		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000287239	ENST00000536223		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000287239	ENST00000488136		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000287239	ENST00000442371		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000287239	ENST00000444201		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000287239	ENST00000376730		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372714	ENST00000536223		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372714	ENST00000488136		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372714	ENST00000442371		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372714	ENST00000444201		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372714	ENST00000376730		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372711	ENST00000536223		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372711	ENST00000488136		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372711	ENST00000442371		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372711	ENST00000444201		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000372711	ENST00000376730		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000490365	ENST00000536223		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000490365	ENST00000488136		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000490365	ENST00000442371		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000490365	ENST00000444201		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
intron-intron	ENST00000490365	ENST00000376730		ChiTaRS3.1			AJ299263	KAT6B	chr10	76786654	+	GCNT1	chr9	79042644	+
3UTR-3UTR	ENST00000265062	ENST00000273986		ChiTaRS3.1			BU617059	RAB7A	chr3	128532450	-	CISD2	chr4	103809198	-
3UTR-intron	ENST00000265062	ENST00000503643		ChiTaRS3.1			BU617059	RAB7A	chr3	128532450	-	CISD2	chr4	103809198	-
3UTR-3UTR	ENST00000482525	ENST00000273986		ChiTaRS3.1			BU617059	RAB7A	chr3	128532450	-	CISD2	chr4	103809198	-
3UTR-intron	ENST00000482525	ENST00000503643		ChiTaRS3.1			BU617059	RAB7A	chr3	128532450	-	CISD2	chr4	103809198	-
3UTR-3UTR	ENST00000485280	ENST00000273986		ChiTaRS3.1			BU617059	RAB7A	chr3	128532450	-	CISD2	chr4	103809198	-
3UTR-intron	ENST00000485280	ENST00000503643		ChiTaRS3.1			BU617059	RAB7A	chr3	128532450	-	CISD2	chr4	103809198	-
3UTR-intron	ENST00000246069	ENST00000311635		ChiTaRS3.1			BF886494	DSTN	chr20	17588489	+	FBXO31	chr16	87394196	-
3UTR-intron	ENST00000246069	ENST00000563956		ChiTaRS3.1			BF886494	DSTN	chr20	17588489	+	FBXO31	chr16	87394196	-
3UTR-intron	ENST00000474024	ENST00000311635		ChiTaRS3.1			BF886494	DSTN	chr20	17588489	+	FBXO31	chr16	87394196	-
3UTR-intron	ENST00000474024	ENST00000563956		ChiTaRS3.1			BF886494	DSTN	chr20	17588489	+	FBXO31	chr16	87394196	-
intron-3UTR	ENST00000370105	ENST00000381154		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
intron-intron	ENST00000370105	ENST00000217890		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
5CDS-3UTR	ENST00000370109	ENST00000381154		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
5CDS-intron	ENST00000370109	ENST00000217890		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
5CDS-3UTR	ENST00000427040	ENST00000381154		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
5CDS-intron	ENST00000427040	ENST00000217890		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
intron-3UTR	ENST00000342173	ENST00000381154		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
intron-intron	ENST00000342173	ENST00000217890		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
intron-3UTR	ENST00000488176	ENST00000381154		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
intron-intron	ENST00000488176	ENST00000217890		ChiTaRS3.1			BC003660	DPH5	chr1	101455619	-	ARSD	chrX	2824198	-
intron-3UTR	ENST00000418539	ENST00000340296		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000534253		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000263811		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000397119		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000410079		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000508530		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000409197		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000409317		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000409773		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000409453		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3UTR	ENST00000418539	ENST00000358002		ChiTaRS3.1			BF989407	BCYRN1	chrX	70757884	+	DYNC1I2	chr2	172604408	+
intron-3CDS	ENST00000457812	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000457812	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000457812	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000457812	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000319170	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000319170	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000319170	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000319170	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374493	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374493	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374493	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374493	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374489	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374489	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374489	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374489	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374488	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374488	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374488	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000374488	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000308091	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000308091	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000308091	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000308091	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000419464	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000419464	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000419464	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000419464	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000423104	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000423104	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000423104	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000423104	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000439222	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000439222	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000439222	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000439222	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000453034	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000453034	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000453034	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000453034	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000418114	ENST00000372188		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000418114	ENST00000372187		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000418114	ENST00000372185		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
intron-3CDS	ENST00000418114	ENST00000372181		ChiTaRS3.1			BC048319	RAPH1	chr2	204305478	-	FAM213A	chr10	82180297	+
3UTR-3UTR	ENST00000375771	ENST00000299576		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000375771	ENST00000309377		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000375771	ENST00000309357		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375771	ENST00000529876		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375771	ENST00000525005		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375771	ENST00000534506		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375771	ENST00000396648		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375771	ENST00000534147		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000375766	ENST00000299576		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000375766	ENST00000309377		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000375766	ENST00000309357		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375766	ENST00000529876		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375766	ENST00000525005		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375766	ENST00000534506		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375766	ENST00000396648		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000375766	ENST00000534147		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000400773	ENST00000299576		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000400773	ENST00000309377		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000400773	ENST00000309357		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000400773	ENST00000529876		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000400773	ENST00000525005		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000400773	ENST00000534506		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000400773	ENST00000396648		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000400773	ENST00000534147		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000441801	ENST00000299576		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000441801	ENST00000309377		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000441801	ENST00000309357		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000441801	ENST00000529876		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000441801	ENST00000525005		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000441801	ENST00000534506		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000441801	ENST00000396648		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000441801	ENST00000534147		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000332305	ENST00000299576		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000332305	ENST00000309377		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-3UTR	ENST00000332305	ENST00000309357		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000332305	ENST00000529876		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000332305	ENST00000525005		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000332305	ENST00000534506		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000332305	ENST00000396648		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
3UTR-intron	ENST00000332305	ENST00000534147		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000509138	ENST00000299576		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000509138	ENST00000309377		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000509138	ENST00000309357		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000509138	ENST00000529876		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000509138	ENST00000525005		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000509138	ENST00000534506		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000509138	ENST00000396648		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-intron	ENST00000509138	ENST00000534147		ChiTaRS3.1			BP419192	FBLIM1	chr1	16111540	+	AKIP1	chr11	8941455	+
intron-3UTR	ENST00000395282	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000395283	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000340417	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000442461	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000446851	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000510557	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000506560	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000505397	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000505905	ENST00000353258		ChiTaRS3.1			AW881269	LIN54	chr4	83893284	-	GDE1	chr16	19513902	-
intron-3UTR	ENST00000389794	ENST00000519937		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389794	ENST00000342375		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389794	ENST00000393822		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389794	ENST00000409383		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389793	ENST00000519937		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389793	ENST00000342375		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389793	ENST00000393822		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000389793	ENST00000409383		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000536965	ENST00000519937		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000536965	ENST00000342375		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000536965	ENST00000393822		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000536965	ENST00000409383		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000473037	ENST00000519937		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000473037	ENST00000342375		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000473037	ENST00000393822		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
intron-3UTR	ENST00000473037	ENST00000409383		ChiTaRS3.1			BC020793	LYST	chr1	235992708	-	SFTPB	chr2	85885676	-
In-frame	ENST00000249837	ENST00000382582		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000249837	ENST00000355994		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000249837	ENST00000397875		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000249837	ENST00000397866		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000249837	ENST00000397865		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000249837	ENST00000527041		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000249837	ENST00000359645		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000528160		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000397869		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000354542		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000526111		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000580402		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000579129		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000578193		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000397863		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000397860		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000249837	ENST00000487778		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000382582		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000355994		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000397875		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000397866		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000397865		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000527041		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000261517	ENST00000359645		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000528160		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000397869		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000354542		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000526111		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000580402		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000579129		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000578193		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000397863		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000397860		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000261517	ENST00000487778		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000382582		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000355994		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000397875		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000397866		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000397865		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000527041		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395896	ENST00000359645		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000528160		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000397869		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000354542		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000526111		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000580402		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000579129		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000578193		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000397863		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000397860		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395896	ENST00000487778		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000382582		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000355994		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000397875		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000397866		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000397865		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000527041		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
In-frame	ENST00000395898	ENST00000359645		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000528160		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000397869		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000354542		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000526111		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000580402		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000579129		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000578193		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000397863		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000397860		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
5CDS-intron	ENST00000395898	ENST00000487778		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000382582		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000355994		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000397875		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000397866		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000397865		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000527041		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000558919	ENST00000359645		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000528160		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000397869		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000354542		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000526111		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000580402		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000579129		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000578193		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000397863		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000397860		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-intron	ENST00000558919	ENST00000487778		ChiTaRS3.1			DA262042	VPS13C	chr15	62352473	-	MBP	chr18	74702017	-
intron-3CDS	ENST00000398238	ENST00000409426		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000398238	ENST00000441902		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000398238	ENST00000368890		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000398238	ENST00000368888		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000398238	ENST00000464105		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000398238	ENST00000414290		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-3CDS	ENST00000225282	ENST00000409426		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000225282	ENST00000441902		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000225282	ENST00000368890		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000225282	ENST00000368888		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000225282	ENST00000464105		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000225282	ENST00000414290		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-3CDS	ENST00000575068	ENST00000409426		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000575068	ENST00000441902		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000575068	ENST00000368890		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000575068	ENST00000368888		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000575068	ENST00000464105		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
intron-intron	ENST00000575068	ENST00000414290		ChiTaRS3.1			CD388184	NSF	chr17	44798995	-	PIP5K1A	chr1	151210701	-
5CDS-3UTR	ENST00000380520	ENST00000322611		ChiTaRS3.1			CN361372	SERPINB6	chr6	2949146	-	BASP1	chr5	17276223	+
5CDS-3UTR	ENST00000380524	ENST00000322611		ChiTaRS3.1			CN361372	SERPINB6	chr6	2949146	-	BASP1	chr5	17276223	+
5CDS-3UTR	ENST00000380529	ENST00000322611		ChiTaRS3.1			CN361372	SERPINB6	chr6	2949146	-	BASP1	chr5	17276223	+
5CDS-3UTR	ENST00000380539	ENST00000322611		ChiTaRS3.1			CN361372	SERPINB6	chr6	2949146	-	BASP1	chr5	17276223	+
5CDS-3UTR	ENST00000380546	ENST00000322611		ChiTaRS3.1			CN361372	SERPINB6	chr6	2949146	-	BASP1	chr5	17276223	+
5CDS-3UTR	ENST00000335686	ENST00000322611		ChiTaRS3.1			CN361372	SERPINB6	chr6	2949146	-	BASP1	chr5	17276223	+
5CDS-3UTR	ENST00000539317	ENST00000435275		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
5CDS-intron	ENST00000539317	ENST00000440692		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
5CDS-3UTR	ENST00000539317	ENST00000372360		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
5CDS-intron	ENST00000539317	ENST00000476545		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
5CDS-3UTR	ENST00000539317	ENST00000360830		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
intron-3UTR	ENST00000487871	ENST00000435275		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
intron-intron	ENST00000487871	ENST00000440692		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
intron-3UTR	ENST00000487871	ENST00000372360		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
intron-intron	ENST00000487871	ENST00000476545		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
intron-3UTR	ENST00000487871	ENST00000360830		ChiTaRS3.1			BG287995	SMAP2	chr1	40882755	+	RPS24	chr10	79800389	+
3UTR-intron	ENST00000539915	ENST00000297109		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000539915	ENST00000523198		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000539915	ENST00000440364		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000539915	ENST00000426761		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000316491	ENST00000297109		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000316491	ENST00000523198		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000316491	ENST00000440364		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
3UTR-intron	ENST00000316491	ENST00000426761		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000531864	ENST00000297109		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000531864	ENST00000523198		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000531864	ENST00000440364		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000531864	ENST00000426761		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000399681	ENST00000297109		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000399681	ENST00000523198		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000399681	ENST00000440364		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000399681	ENST00000426761		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000398696	ENST00000297109		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000398696	ENST00000523198		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000398696	ENST00000440364		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000398696	ENST00000426761		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000534369	ENST00000297109		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000534369	ENST00000523198		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000534369	ENST00000440364		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-intron	ENST00000534369	ENST00000426761		ChiTaRS3.1			AW952907	ZNF720	chr16	31770872	+	SAP30L	chr5	153830352	+
intron-3CDS	ENST00000531188	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000531188	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000531188	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000531188	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000531188	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000531188	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000530164	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000530164	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000530164	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000530164	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000530164	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000530164	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000278572	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000278572	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000278572	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000278572	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000278572	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000278572	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000534440	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000534440	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000534440	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000534440	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000534440	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000534440	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000527446	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000527446	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000527446	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000527446	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000527446	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000527446	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000526608	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000526608	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000526608	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000526608	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000526608	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000526608	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000524851	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000524851	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000524851	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000524851	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000524851	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000524851	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000529285	ENST00000408912		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000529285	ENST00000457010		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000529285	ENST00000563544		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000529285	ENST00000538189		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-3CDS	ENST00000529285	ENST00000268314		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-5UTR	ENST00000529285	ENST00000412665		ChiTaRS3.1			DA636472	RPS3	chr11	75115609	+	ARMC5	chr16	31471296	+
intron-intron	ENST00000233099	ENST00000507088		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-5UTR	ENST00000233099	ENST00000225969		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-5UTR	ENST00000233099	ENST00000503633		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-5UTR	ENST00000233099	ENST00000442592		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-intron	ENST00000233099	ENST00000511860		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-intron	ENST00000354531	ENST00000507088		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-5UTR	ENST00000354531	ENST00000225969		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-5UTR	ENST00000354531	ENST00000503633		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-5UTR	ENST00000354531	ENST00000442592		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
intron-intron	ENST00000354531	ENST00000511860		ChiTaRS3.1			BF665678	HEATR5B	chr2	37227200	-	MRPL27	chr17	48450551	-
5UTR-3CDS	ENST00000316286	ENST00000287878		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000418337		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000433631		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000492843		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000316286	ENST00000392801		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-5UTR	ENST00000316286	ENST00000461529		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
Frame-shit	ENST00000491431	ENST00000287878		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000418337		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000433631		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000492843		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-intron	ENST00000491431	ENST00000392801		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5CDS-5UTR	ENST00000491431	ENST00000461529		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-3CDS	ENST00000451334	ENST00000287878		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000418337		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000433631		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000492843		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-intron	ENST00000451334	ENST00000392801		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
5UTR-5UTR	ENST00000451334	ENST00000461529		ChiTaRS3.1			DB486204	ZNF786	chr7	148787715	-	PRKAG2	chr7	151372724	-
intron-intron	ENST00000239926	ENST00000330978		ChiTaRS3.1			AK310988	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-intron	ENST00000421631	ENST00000330978		ChiTaRS3.1			AK310988	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-intron	ENST00000509812	ENST00000330978		ChiTaRS3.1			AK310988	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-intron	ENST00000515645	ENST00000330978		ChiTaRS3.1			AK310988	MYOT	chr5	137089701	-	BOLA2	chr16	29874174	-
intron-3CDS	ENST00000216281	ENST00000306846		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000216281	ENST00000436644		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000216281	ENST00000338972		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000216281	ENST00000514514		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000306846		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000436644		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000338972		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000334701	ENST00000514514		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000306846		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000436644		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000338972		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000441629	ENST00000514514		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000306846		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000436644		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000338972		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3CDS	ENST00000558600	ENST00000514514		ChiTaRS3.1			BU732881	HSP90AA1	chr14	102551205	+	PAIP1	chr5	43535707	+
intron-3UTR	ENST00000397239	ENST00000413644		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000397239	ENST00000368961		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000397239	ENST00000310786		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000397239	ENST00000275080		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000397239	ENST00000324953		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000397239	ENST00000512821		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-intron	ENST00000397239	ENST00000504373		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-intron	ENST00000397239	ENST00000506649		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000244776	ENST00000413644		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000244776	ENST00000368961		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000244776	ENST00000310786		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000244776	ENST00000275080		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000244776	ENST00000324953		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000244776	ENST00000512821		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-intron	ENST00000244776	ENST00000504373		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-intron	ENST00000244776	ENST00000506649		ChiTaRS3.1			BM752335	DEK	chr6	18236708	-	CD164	chr6	109689048	-
intron-3UTR	ENST00000314136	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000314136	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-3UTR	ENST00000369119	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000369119	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-3UTR	ENST00000369116	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000369116	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-3UTR	ENST00000436748	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000436748	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-3UTR	ENST00000369114	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000369114	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-3UTR	ENST00000369115	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000369115	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-3UTR	ENST00000533654	ENST00000256497		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
intron-intron	ENST00000533654	ENST00000445686		ChiTaRS3.1			BX487661	ANP32E	chr1	150208282	-	EDEM1	chr3	5259631	+
5CDS-intron	ENST00000228136	ENST00000371839		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000228136	ENST00000371838		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000228136	ENST00000371836		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000228136	ENST00000334103		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000228136	ENST00000497451		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000422258	ENST00000371839		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000422258	ENST00000371838		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000422258	ENST00000371836		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000422258	ENST00000334103		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
5CDS-intron	ENST00000422258	ENST00000497451		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
intron-intron	ENST00000527893	ENST00000371839		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
intron-intron	ENST00000527893	ENST00000371838		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
intron-intron	ENST00000527893	ENST00000371836		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
intron-intron	ENST00000527893	ENST00000334103		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
intron-intron	ENST00000527893	ENST00000497451		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
3UTR-intron	ENST00000525684	ENST00000371839		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
3UTR-intron	ENST00000525684	ENST00000371838		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
3UTR-intron	ENST00000525684	ENST00000371836		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
3UTR-intron	ENST00000525684	ENST00000334103		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
3UTR-intron	ENST00000525684	ENST00000497451		ChiTaRS3.1			BE088725	C11orf58	chr11	16776534	+	AGBL4	chr1	49982706	-
intron-intron	ENST00000280187	ENST00000333229		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000280187	ENST00000342449		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000280187	ENST00000380800		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-3UTR	ENST00000280187	ENST00000341322		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000280187	ENST00000470108		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000393658	ENST00000333229		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000393658	ENST00000342449		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000393658	ENST00000380800		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-3UTR	ENST00000393658	ENST00000341322		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000393658	ENST00000470108		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506894	ENST00000333229		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506894	ENST00000342449		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506894	ENST00000380800		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-3UTR	ENST00000506894	ENST00000341322		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506894	ENST00000470108		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000515090	ENST00000333229		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000515090	ENST00000342449		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000515090	ENST00000380800		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-3UTR	ENST00000515090	ENST00000341322		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000515090	ENST00000470108		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506219	ENST00000333229		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506219	ENST00000342449		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506219	ENST00000380800		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-3UTR	ENST00000506219	ENST00000341322		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
intron-intron	ENST00000506219	ENST00000470108		ChiTaRS3.1			DA209219	GPM6A	chr4	176923469	-	BRWD1	chr21	40669820	-
5UTR-3UTR	ENST00000239926	ENST00000534336		ChiTaRS3.1			BC010924	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
intron-3UTR	ENST00000421631	ENST00000534336		ChiTaRS3.1			BC010924	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
intron-3UTR	ENST00000509812	ENST00000534336		ChiTaRS3.1			BC010924	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
intron-3UTR	ENST00000515645	ENST00000534336		ChiTaRS3.1			BC010924	MYOT	chr5	137206333	+	MALAT1	chr11	65269558	+
3UTR-3CDS	ENST00000482812	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
3UTR-3CDS	ENST00000482812	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
3UTR-3CDS	ENST00000482812	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
3UTR-intron	ENST00000482812	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
5UTR-3CDS	ENST00000430044	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
5UTR-3CDS	ENST00000430044	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
5UTR-3CDS	ENST00000430044	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
5UTR-intron	ENST00000430044	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
Frame-shit	ENST00000452146	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
Frame-shit	ENST00000452146	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
Frame-shit	ENST00000452146	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
5CDS-intron	ENST00000452146	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000434507	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000434507	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000434507	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-intron	ENST00000434507	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000415421	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000415421	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000415421	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-intron	ENST00000415421	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000320311	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000320311	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000320311	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-intron	ENST00000320311	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000422997	ENST00000335459		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000422997	ENST00000409520		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-3CDS	ENST00000422997	ENST00000409133		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
intron-intron	ENST00000422997	ENST00000479944		ChiTaRS3.1			DC366721	GALNT11	chr7	151722969	+	TRABD2A	chr2	85097910	-
Frame-shit	ENST00000374076	ENST00000226230		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
Frame-shit	ENST00000374076	ENST00000583381		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
5CDS-intron	ENST00000374076	ENST00000582113		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
5CDS-intron	ENST00000374076	ENST00000336687		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
Frame-shit	ENST00000608611	ENST00000226230		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
Frame-shit	ENST00000608611	ENST00000583381		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
5CDS-intron	ENST00000608611	ENST00000582113		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
5CDS-intron	ENST00000608611	ENST00000336687		ChiTaRS3.1			BM016316	TMEM222	chr1	27661957	+	TMEM97	chr17	26653611	+
intron-intron	ENST00000272227	ENST00000378300		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000272227	ENST00000378292		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000272227	ENST00000329305		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000272227	ENST00000360958		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-intron	ENST00000404371	ENST00000378300		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000404371	ENST00000378292		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000404371	ENST00000329305		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000404371	ENST00000360958		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-intron	ENST00000404824	ENST00000378300		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000404824	ENST00000378292		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000404824	ENST00000329305		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000404824	ENST00000360958		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-intron	ENST00000540494	ENST00000378300		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000540494	ENST00000378292		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000540494	ENST00000329305		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000540494	ENST00000360958		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-intron	ENST00000381611	ENST00000378300		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000381611	ENST00000378292		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000381611	ENST00000329305		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000381611	ENST00000360958		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-intron	ENST00000489662	ENST00000378300		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000489662	ENST00000378292		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000489662	ENST00000329305		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
intron-5UTR	ENST00000489662	ENST00000360958		ChiTaRS3.1			BE910365	PDIA6	chr2	10933258	-	TPM2	chr9	35689912	-
Frame-shit	ENST00000395715	ENST00000380861		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
Frame-shit	ENST00000395715	ENST00000454666		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
5CDS-intron	ENST00000395715	ENST00000466248		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
In-frame	ENST00000220888	ENST00000380861		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
In-frame	ENST00000220888	ENST00000454666		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
5CDS-intron	ENST00000220888	ENST00000466248		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
Frame-shit	ENST00000519076	ENST00000380861		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
Frame-shit	ENST00000519076	ENST00000454666		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
5CDS-intron	ENST00000519076	ENST00000466248		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
Frame-shit	ENST00000520276	ENST00000380861		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
Frame-shit	ENST00000520276	ENST00000454666		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
5CDS-intron	ENST00000520276	ENST00000466248		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
In-frame	ENST00000519674	ENST00000380861		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
In-frame	ENST00000519674	ENST00000454666		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
5CDS-intron	ENST00000519674	ENST00000466248		ChiTaRS3.1			CF138660	TRPS1	chr8	116599227	-	WWC3	chrX	10058810	+
intron-3CDS	ENST00000371224	ENST00000258947		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371224	ENST00000509507		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371224	ENST00000448105		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371224	ENST00000416445		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371224	ENST00000508679		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-intron	ENST00000371224	ENST00000510997		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371221	ENST00000258947		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371221	ENST00000509507		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371221	ENST00000448105		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371221	ENST00000416445		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000371221	ENST00000508679		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-intron	ENST00000371221	ENST00000510997		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000483788	ENST00000258947		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000483788	ENST00000509507		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000483788	ENST00000448105		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000483788	ENST00000416445		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000483788	ENST00000508679		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-intron	ENST00000483788	ENST00000510997		ChiTaRS3.1			EY198528	ALDH18A1	chr10	97366159	-	CALCOCO2	chr17	46937745	+
intron-3CDS	ENST00000311713	ENST00000424807		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000311713	ENST00000391750		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000311713	ENST00000346401		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000311713	ENST00000245620		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000311713	ENST00000407860		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000311713	ENST00000469273		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-3CDS	ENST00000278856	ENST00000424807		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000278856	ENST00000391750		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000278856	ENST00000346401		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000278856	ENST00000245620		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000278856	ENST00000407860		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000278856	ENST00000469273		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-3CDS	ENST00000529106	ENST00000424807		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000529106	ENST00000391750		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000529106	ENST00000346401		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000529106	ENST00000245620		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000529106	ENST00000407860		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000529106	ENST00000469273		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-3CDS	ENST00000525239	ENST00000424807		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525239	ENST00000391750		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525239	ENST00000346401		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525239	ENST00000245620		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525239	ENST00000407860		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525239	ENST00000469273		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-3CDS	ENST00000525752	ENST00000424807		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525752	ENST00000391750		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525752	ENST00000346401		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525752	ENST00000245620		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525752	ENST00000407860		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000525752	ENST00000469273		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-3CDS	ENST00000540620	ENST00000424807		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000540620	ENST00000391750		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000540620	ENST00000346401		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000540620	ENST00000245620		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000540620	ENST00000407860		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
intron-intron	ENST00000540620	ENST00000469273		ChiTaRS3.1			DA670599	WDR74	chr11	62609096	-	LILRB3	chr19	54726961	-
Frame-shit	ENST00000546495	ENST00000176763		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
5CDS-intron	ENST00000546495	ENST00000517775		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
Frame-shit	ENST00000546760	ENST00000176763		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
5CDS-intron	ENST00000546760	ENST00000517775		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-3CDS	ENST00000552402	ENST00000176763		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-intron	ENST00000552402	ENST00000517775		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-3CDS	ENST00000439424	ENST00000176763		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-intron	ENST00000439424	ENST00000517775		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
In-frame	ENST00000552775	ENST00000176763		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
5CDS-intron	ENST00000552775	ENST00000517775		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-3CDS	ENST00000547709	ENST00000176763		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-intron	ENST00000547709	ENST00000517775		ChiTaRS3.1			BU626724	C17orf49	chr17	6920619	-	STK10	chr5	171484385	+
3UTR-3UTR	ENST00000369849	ENST00000297185		ChiTaRS3.1			BM722787	INA	chr10	105049874	+	HSPA9	chr5	137891646	-
3UTR-intron	ENST00000369849	ENST00000501917		ChiTaRS3.1			BM722787	INA	chr10	105049874	+	HSPA9	chr5	137891646	-
intron-intron	ENST00000361887	ENST00000488324		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000399199		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000274853		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000498031		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000444206		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000438815		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000552716		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000491628		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000435929		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000412189		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000548255		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000493833		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000438945		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000455935		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000551049		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000472334		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000451544		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000437121		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000551034		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000465704		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000383573		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000400554		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000550073		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000492746		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000449705		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000443517		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000361887	ENST00000551784		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-5UTR	ENST00000361887	ENST00000487859		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-3UTR	ENST00000361887	ENST00000435006		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000488324		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000399199		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000274853		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000498031		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000444206		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000438815		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000552716		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000491628		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000435929		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000412189		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000548255		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000493833		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000438945		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000455935		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000551049		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000472334		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000451544		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000437121		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000551034		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000465704		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000383573		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000400554		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000550073		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000492746		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000449705		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000443517		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000439251	ENST00000551784		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-5UTR	ENST00000439251	ENST00000487859		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-3UTR	ENST00000439251	ENST00000435006		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000488324		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000399199		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000274853		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000498031		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000444206		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000438815		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000552716		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000491628		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000435929		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000412189		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000548255		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000493833		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000438945		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000455935		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000551049		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000472334		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000451544		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000437121		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000551034		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000465704		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000383573		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000400554		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000550073		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000492746		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000449705		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000443517		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000452693	ENST00000551784		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-5UTR	ENST00000452693	ENST00000487859		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-3UTR	ENST00000452693	ENST00000435006		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000488324		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000399199		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000274853		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000498031		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000444206		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000438815		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000552716		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000491628		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000435929		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000412189		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000548255		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000493833		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000438945		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000455935		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000551049		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000472334		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000451544		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000437121		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000551034		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000465704		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000383573		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000400554		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000550073		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000492746		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000449705		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000443517		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-intron	ENST00000535214	ENST00000551784		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-5UTR	ENST00000535214	ENST00000487859		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
intron-3UTR	ENST00000535214	ENST00000435006		ChiTaRS3.1			BX390177	PNMA5	chrX	152159705	-	PPP1R18	chr6	1976835	-
5CDS-intron	ENST00000262225	ENST00000370982		ChiTaRS3.1			CF125471	TMED2	chr12	124071482	+	GNG12	chr1	68698039	-
5CDS-intron	ENST00000262225	ENST00000494936		ChiTaRS3.1			CF125471	TMED2	chr12	124071482	+	GNG12	chr1	68698039	-
5CDS-intron	ENST00000509052	ENST00000370982		ChiTaRS3.1			CF125471	TMED2	chr12	124071482	+	GNG12	chr1	68698039	-
5CDS-intron	ENST00000509052	ENST00000494936		ChiTaRS3.1			CF125471	TMED2	chr12	124071482	+	GNG12	chr1	68698039	-
3UTR-intron	ENST00000312515	ENST00000520296		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000312515	ENST00000427211		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000312515	ENST00000537107		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000312515	ENST00000454272		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000312515	ENST00000442470		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
intron-intron	ENST00000376991	ENST00000520296		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
intron-intron	ENST00000376991	ENST00000427211		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
intron-intron	ENST00000376991	ENST00000537107		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
intron-intron	ENST00000376991	ENST00000454272		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
intron-intron	ENST00000376991	ENST00000442470		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000527119	ENST00000520296		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000527119	ENST00000427211		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000527119	ENST00000537107		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000527119	ENST00000454272		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000527119	ENST00000442470		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000532933	ENST00000520296		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000532933	ENST00000427211		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000532933	ENST00000537107		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000532933	ENST00000454272		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
3UTR-intron	ENST00000532933	ENST00000442470		ChiTaRS3.1			AW452265	DRAP1	chr11	65688962	-	ANKRD65	chr1	1356177	+
intron-intron	ENST00000311862	ENST00000255175		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-3UTR	ENST00000311862	ENST00000342374		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000311862	ENST00000541235		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000311862	ENST00000468234		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000533605	ENST00000255175		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-3UTR	ENST00000533605	ENST00000342374		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000533605	ENST00000541235		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000533605	ENST00000468234		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000525955	ENST00000255175		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-3UTR	ENST00000525955	ENST00000342374		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000525955	ENST00000541235		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-intron	ENST00000525955	ENST00000468234		ChiTaRS3.1			BG572858	PRG2	chr11	57156705	-	SERINC3	chr20	43126403	-
intron-3CDS	ENST00000338380	ENST00000312932		ChiTaRS3.1			R49913	SLPI	chr20	43882244	-	SEC14L2	chr22	30812042	+
intron-3CDS	ENST00000338380	ENST00000403484		ChiTaRS3.1			R49913	SLPI	chr20	43882244	-	SEC14L2	chr22	30812042	+
intron-3CDS	ENST00000338380	ENST00000405717		ChiTaRS3.1			R49913	SLPI	chr20	43882244	-	SEC14L2	chr22	30812042	+
intron-3CDS	ENST00000338380	ENST00000402592		ChiTaRS3.1			R49913	SLPI	chr20	43882244	-	SEC14L2	chr22	30812042	+
intron-intron	ENST00000338380	ENST00000459728		ChiTaRS3.1			R49913	SLPI	chr20	43882244	-	SEC14L2	chr22	30812042	+
intron-3UTR	ENST00000530124	ENST00000276297		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000530124	ENST00000358919		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000530124	ENST00000512044		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000530124	ENST00000316609		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000530124	ENST00000511869		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000530124	ENST00000510318		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000530124	ENST00000520226		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-3UTR	ENST00000257247	ENST00000276297		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000257247	ENST00000358919		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000257247	ENST00000512044		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000257247	ENST00000316609		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000257247	ENST00000511869		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000257247	ENST00000510318		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000257247	ENST00000520226		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-3UTR	ENST00000525875	ENST00000276297		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000525875	ENST00000358919		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000525875	ENST00000512044		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000525875	ENST00000316609		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000525875	ENST00000511869		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000525875	ENST00000510318		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000525875	ENST00000520226		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-3UTR	ENST00000378024	ENST00000276297		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000378024	ENST00000358919		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000378024	ENST00000512044		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000378024	ENST00000316609		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000378024	ENST00000511869		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000378024	ENST00000510318		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
intron-intron	ENST00000378024	ENST00000520226		ChiTaRS3.1			CB999461	AHNAK	chr11	62283708	-	DLC1	chr8	12942003	-
3UTR-3UTR	ENST00000434074	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-intron	ENST00000434074	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-3UTR	ENST00000312040	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-intron	ENST00000312040	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-3UTR	ENST00000451945	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-intron	ENST00000451945	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-3UTR	ENST00000529655	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-intron	ENST00000529655	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-3UTR	ENST00000530500	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-intron	ENST00000530500	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-3UTR	ENST00000526508	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-intron	ENST00000526508	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-3UTR	ENST00000524625	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-intron	ENST00000524625	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-3UTR	ENST00000359513	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
3UTR-intron	ENST00000359513	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-3UTR	ENST00000528494	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-intron	ENST00000528494	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-3UTR	ENST00000526485	ENST00000578382		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
intron-intron	ENST00000526485	ENST00000583560		ChiTaRS3.1			AA345253	ATG13	chr11	46694853	+	MYO15B	chr17	73608897	+
5CDS-5UTR	ENST00000244534	ENST00000589977		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-5UTR	ENST00000244534	ENST00000591571		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-5UTR	ENST00000244534	ENST00000586738		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-5UTR	ENST00000244534	ENST00000588783		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-5UTR	ENST00000244534	ENST00000586752		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-5UTR	ENST00000244534	ENST00000588302		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-5UTR	ENST00000244534	ENST00000590964		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-intron	ENST00000244534	ENST00000341249		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-intron	ENST00000244534	ENST00000588822		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-intron	ENST00000244534	ENST00000586200		ChiTaRS3.1			DA571038	HIST1H1D	chr6	26234442	-	METTL23	chr17	74722934	+
5CDS-intron	ENST00000537561	ENST00000402038		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000537561	ENST00000492350		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000359850	ENST00000402038		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000359850	ENST00000492350		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000521288	ENST00000402038		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000521288	ENST00000492350		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000502852	ENST00000402038		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
5CDS-intron	ENST00000502852	ENST00000492350		ChiTaRS3.1			DA697471	NUDT16	chr3	131101162	+	PARG	chr10	51314451	-
intron-5UTR	ENST00000363840	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000363840	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000363840	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000363840	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000365524	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000365524	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000365524	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000365524	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000364822	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000364822	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000364822	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000364822	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
5CDS-5UTR	ENST00000363859	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
5CDS-5UTR	ENST00000363859	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
5CDS-intron	ENST00000363859	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
5CDS-intron	ENST00000363859	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000385578	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000385578	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000385578	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000385578	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000363146	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000363146	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000363146	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000363146	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000364084	ENST00000162749		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-5UTR	ENST00000364084	ENST00000540022		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000364084	ENST00000366159		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-intron	ENST00000364084	ENST00000437813		ChiTaRS3.1			DA583056	GAS5	chr1	173834491	-	TNFRSF1A	chr12	6451170	-
intron-3CDS	ENST00000335742	ENST00000585682		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000335742	ENST00000296530		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000335742	ENST00000393807		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-5UTR	ENST00000335742	ENST00000589306		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000335742	ENST00000592057		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000261509	ENST00000585682		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000261509	ENST00000296530		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000261509	ENST00000393807		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-5UTR	ENST00000261509	ENST00000589306		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000261509	ENST00000592057		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000505667	ENST00000585682		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000505667	ENST00000296530		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000505667	ENST00000393807		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-5UTR	ENST00000505667	ENST00000589306		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000505667	ENST00000592057		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000333488	ENST00000585682		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000333488	ENST00000296530		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000333488	ENST00000393807		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-5UTR	ENST00000333488	ENST00000589306		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000333488	ENST00000592057		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000512127	ENST00000585682		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-3CDS	ENST00000512127	ENST00000296530		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000512127	ENST00000393807		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-5UTR	ENST00000512127	ENST00000589306		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
intron-intron	ENST00000512127	ENST00000592057		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
5UTR-3CDS	ENST00000507735	ENST00000585682		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
5UTR-3CDS	ENST00000507735	ENST00000296530		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
5UTR-intron	ENST00000507735	ENST00000393807		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
5UTR-5UTR	ENST00000507735	ENST00000589306		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
5UTR-intron	ENST00000507735	ENST00000592057		ChiTaRS3.1			BG700758	PALLD	chr4	169753322	+	FAM198B	chr4	159076979	-
3UTR-intron	ENST00000526231	ENST00000409402		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
3UTR-intron	ENST00000526231	ENST00000410092		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
3UTR-intron	ENST00000526231	ENST00000309836		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
3UTR-intron	ENST00000526231	ENST00000453447		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
3UTR-intron	ENST00000526231	ENST00000383356		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
3UTR-intron	ENST00000526231	ENST00000464481		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000308860	ENST00000409402		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000308860	ENST00000410092		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000308860	ENST00000309836		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000308860	ENST00000453447		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000308860	ENST00000383356		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000308860	ENST00000464481		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000532190	ENST00000409402		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000532190	ENST00000410092		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000532190	ENST00000309836		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000532190	ENST00000453447		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000532190	ENST00000383356		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000532190	ENST00000464481		ChiTaRS3.1			DA323765	ADCK5	chr8	145608431	+	SPIRE1	chr18	12452411	-
5CDS-intron	ENST00000262510	ENST00000424085		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000257075		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000373747		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000426105		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000440538		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000373741		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000423018		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000373742		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000262510	ENST00000490546		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000424085		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000257075		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000373747		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000426105		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000440538		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000373741		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000423018		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000373742		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000436936	ENST00000490546		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000424085		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000257075		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000373747		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000426105		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000440538		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000373741		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000423018		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000373742		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000308149	ENST00000490546		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000424085		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000257075		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000373747		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000426105		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000440538		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000373741		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000423018		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000373742		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
intron-intron	ENST00000543141	ENST00000490546		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000424085		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000257075		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000373747		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000426105		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000440538		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000373741		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000423018		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000373742		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
5CDS-intron	ENST00000539144	ENST00000490546		ChiTaRS3.1			AK097030	NLRC5	chr16	57063920	+	PUM1	chr1	31448407	-
In-frame	ENST00000368802	ENST00000341695		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000348706		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000432483		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000354147		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000380004		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368802	ENST00000357415		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000368802	ENST00000509426		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000368802	ENST00000310267		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000341695		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000348706		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000432483		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000354147		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000380004		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000368805	ENST00000357415		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000368805	ENST00000509426		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000368805	ENST00000310267		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000341695		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000348706		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000432483		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000354147		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000380004		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
Frame-shit	ENST00000435970	ENST00000357415		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000435970	ENST00000509426		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000435970	ENST00000310267		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000341695		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000348706		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000432483		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000354147		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000380004		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
In-frame	ENST00000358835	ENST00000357415		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-5UTR	ENST00000358835	ENST00000509426		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
5CDS-intron	ENST00000358835	ENST00000310267		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000341695		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000348706		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000432483		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000354147		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000380004		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000462119	ENST00000357415		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-5UTR	ENST00000462119	ENST00000509426		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-intron	ENST00000462119	ENST00000310267		ChiTaRS3.1			DB636770	REV3L	chr6	111710309	-	PPA2	chr4	106320323	-
intron-3CDS	ENST00000335209	ENST00000370873		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000335209	ENST00000484488		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000335209	ENST00000370861		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000335209	ENST00000370858		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-3CDS	ENST00000541210	ENST00000370873		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000541210	ENST00000484488		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000541210	ENST00000370861		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000541210	ENST00000370858		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-3CDS	ENST00000392545	ENST00000370873		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000392545	ENST00000484488		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000392545	ENST00000370861		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000392545	ENST00000370858		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-3CDS	ENST00000535198	ENST00000370873		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000535198	ENST00000484488		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000535198	ENST00000370861		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-5UTR	ENST00000535198	ENST00000370858		ChiTaRS3.1			BG474310	TESC	chr12	117476879	-	PSMA7	chr20	60714913	-
intron-3UTR	ENST00000255631	ENST00000302424		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-intron	ENST00000255631	ENST00000487927		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-3UTR	ENST00000433386	ENST00000302424		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-intron	ENST00000433386	ENST00000487927		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-3UTR	ENST00000376343	ENST00000302424		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-intron	ENST00000376343	ENST00000487927		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-3UTR	ENST00000587922	ENST00000302424		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
intron-intron	ENST00000587922	ENST00000487927		ChiTaRS3.1			CA310781	HSPBP1	chr19	55774050	+	TRIM8	chr10	104417388	-
Frame-shit	ENST00000261303	ENST00000318074		ChiTaRS3.1			DB102097	PSMC1	chr14	90730159	+	SYTL1	chr1	27673966	+
Frame-shit	ENST00000261303	ENST00000543823		ChiTaRS3.1			DB102097	PSMC1	chr14	90730159	+	SYTL1	chr1	27673966	+
5CDS-intron	ENST00000261303	ENST00000490170		ChiTaRS3.1			DB102097	PSMC1	chr14	90730159	+	SYTL1	chr1	27673966	+
Frame-shit	ENST00000543772	ENST00000318074		ChiTaRS3.1			DB102097	PSMC1	chr14	90730159	+	SYTL1	chr1	27673966	+
Frame-shit	ENST00000543772	ENST00000543823		ChiTaRS3.1			DB102097	PSMC1	chr14	90730159	+	SYTL1	chr1	27673966	+
5CDS-intron	ENST00000543772	ENST00000490170		ChiTaRS3.1			DB102097	PSMC1	chr14	90730159	+	SYTL1	chr1	27673966	+
Frame-shit	ENST00000372969	ENST00000599564		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
Frame-shit	ENST00000372969	ENST00000317991		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372969	ENST00000504615		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372969	ENST00000411896		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372969	ENST00000424536		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372969	ENST00000598073		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
Frame-shit	ENST00000372967	ENST00000599564		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
Frame-shit	ENST00000372967	ENST00000317991		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372967	ENST00000504615		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372967	ENST00000411896		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372967	ENST00000424536		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-intron	ENST00000372967	ENST00000598073		ChiTaRS3.1			CN429294	NDUFS5	chr1	39500129	+	GRAMD1A	chr19	35504249	+
5CDS-3UTR	ENST00000295797	ENST00000463837		ChiTaRS3.1			CN412349	PRKCI	chr3	169977847	+	CCDC88B	chr11	64110650	+
5CDS-3UTR	ENST00000295797	ENST00000356786		ChiTaRS3.1			CN412349	PRKCI	chr3	169977847	+	CCDC88B	chr11	64110650	+
5CDS-intron	ENST00000295797	ENST00000301897		ChiTaRS3.1			CN412349	PRKCI	chr3	169977847	+	CCDC88B	chr11	64110650	+
5CDS-intron	ENST00000295797	ENST00000359902		ChiTaRS3.1			CN412349	PRKCI	chr3	169977847	+	CCDC88B	chr11	64110650	+
intron-5UTR	ENST00000530267	ENST00000378741		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000530267	ENST00000308647		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-intron	ENST00000530267	ENST00000378736		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000530535	ENST00000378741		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000530535	ENST00000308647		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-intron	ENST00000530535	ENST00000378736		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
5CDS-5UTR	ENST00000529308	ENST00000378741		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
5CDS-5UTR	ENST00000529308	ENST00000308647		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
5CDS-intron	ENST00000529308	ENST00000378736		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000441408	ENST00000378741		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000441408	ENST00000308647		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-intron	ENST00000441408	ENST00000378736		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000526425	ENST00000378741		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-5UTR	ENST00000526425	ENST00000308647		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-intron	ENST00000526425	ENST00000378736		ChiTaRS3.1			DB111027	USP35	chr11	77907301	+	ATAD3B	chr1	1414090	+
intron-intron	ENST00000376177	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000376177	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000376177	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000376177	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000376177	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000376177	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000376177	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000396172	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000396172	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000396172	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000396172	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000396172	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000396172	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000396172	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000417556	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000417556	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000417556	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000417556	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000417556	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000417556	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000417556	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000458640	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000458640	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000458640	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000458640	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000458640	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000458640	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000458640	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000462421	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000462421	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000462421	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000462421	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000462421	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000462421	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000462421	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000415382	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000415382	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000415382	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000415382	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000415382	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000415382	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000415382	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453105	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453105	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453105	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453105	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453105	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000453105	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453105	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000449074	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000449074	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000449074	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000449074	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000449074	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000449074	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000449074	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000552820	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000552820	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000552820	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000552820	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000552820	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000552820	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000552820	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000463430	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000463430	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000463430	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000463430	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000463430	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000463430	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000463430	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000438578	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000438578	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000438578	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000438578	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000438578	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000438578	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000438578	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000415689	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000415689	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000415689	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000415689	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000415689	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000415689	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000415689	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000456476	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000456476	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000456476	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000456476	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000456476	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000456476	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000456476	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000412106	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000412106	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000412106	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000412106	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000412106	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000412106	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000412106	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000547039	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000547039	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000547039	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000547039	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000547039	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000547039	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000547039	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000550435	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000550435	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000550435	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000550435	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000550435	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000550435	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000550435	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453488	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453488	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453488	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453488	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453488	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000453488	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453488	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453138	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453138	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453138	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453138	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000453138	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000453138	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000453138	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000552288	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000552288	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000552288	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000552288	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000552288	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000552288	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000552288	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000441425	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000441425	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000441425	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000441425	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000441425	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000441425	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000441425	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000456666	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000456666	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000456666	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000456666	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000456666	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000456666	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000456666	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000546633	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000546633	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000546633	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000546633	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000546633	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000546633	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000546633	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000483957	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000483957	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000483957	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000483957	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000483957	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000483957	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000483957	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000430703	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000430703	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000430703	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000430703	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000430703	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000430703	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000430703	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000416863	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000416863	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000416863	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000416863	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000416863	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000416863	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000416863	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000413678	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000413678	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000413678	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000413678	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000413678	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000413678	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000413678	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000414440	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000414440	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000414440	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000414440	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000414440	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000414440	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000414440	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000547489	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000547489	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000547489	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000547489	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000547489	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000547489	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000547489	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000551031	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000551031	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000551031	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000551031	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000551031	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000551031	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000551031	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000468089	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000468089	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000468089	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000468089	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000468089	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000468089	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000468089	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400293	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400293	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400293	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400293	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400293	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000400293	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400293	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400296	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400296	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400296	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400296	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400296	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000400296	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400296	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400295	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400295	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400295	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400295	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000400295	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000400295	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000400295	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000383508	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000383508	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000383508	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000383508	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000383508	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000383508	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000383508	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548340	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548340	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548340	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548340	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548340	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000548340	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548340	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548331	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548331	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548331	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548331	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548331	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000548331	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548331	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000495391	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000495391	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000495391	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000495391	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000495391	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000495391	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000495391	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000446341	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000446341	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000446341	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000446341	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000446341	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000446341	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000446341	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548614	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548614	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548614	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548614	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000548614	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000548614	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000548614	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000448296	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000448296	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000448296	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000448296	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000448296	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000448296	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000448296	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000412330	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000412330	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000412330	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000412330	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000412330	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000412330	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000412330	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000445218	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000445218	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000445218	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000445218	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000445218	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000445218	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000445218	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000546637	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000546637	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000546637	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000546637	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000546637	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000546637	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000546637	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000489325	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000489325	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000489325	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000489325	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000489325	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000489325	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000489325	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000450987	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000450987	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000450987	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000450987	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000450987	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000450987	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000450987	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000431360	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000431360	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000431360	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000431360	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000431360	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000431360	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000431360	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000430784	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000430784	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000430784	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000430784	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000430784	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000430784	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000430784	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000550217	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000550217	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000550217	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000550217	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000550217	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000550217	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000550217	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000470514	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000470514	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000470514	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000470514	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000470514	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000470514	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000470514	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000549374	ENST00000354190		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000549374	ENST00000398492		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000549374	ENST00000227214		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000549374	ENST00000398494		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-5UTR	ENST00000549374	ENST00000543085		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000549374	ENST00000544532		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-intron	ENST00000549374	ENST00000535129		ChiTaRS3.1			DA270342	DDX39B	chr6	2839686	-	PLEKHB1	chr11	73358728	+
intron-3UTR	ENST00000358075	ENST00000316423		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-3UTR	ENST00000358075	ENST00000501493		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-3UTR	ENST00000358075	ENST00000506179		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-intron	ENST00000358075	ENST00000507089		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-intron	ENST00000358075	ENST00000515398		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-3UTR	ENST00000373336	ENST00000316423		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-3UTR	ENST00000373336	ENST00000501493		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-3UTR	ENST00000373336	ENST00000506179		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-intron	ENST00000373336	ENST00000507089		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
intron-intron	ENST00000373336	ENST00000515398		ChiTaRS3.1			BF573050	MAGT1	chrX	77083347	-	UGDH	chr4	39501409	-
3UTR-intron	ENST00000526104	ENST00000259396		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000526104	ENST00000538816		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000526104	ENST00000477456		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000325207	ENST00000259396		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000325207	ENST00000538816		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000325207	ENST00000477456		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000527696	ENST00000259396		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000527696	ENST00000538816		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000527696	ENST00000477456		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
intron-intron	ENST00000531541	ENST00000259396		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
intron-intron	ENST00000531541	ENST00000538816		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
intron-intron	ENST00000531541	ENST00000477456		ChiTaRS3.1			AV718491	RIC8A	chr11	214790	-	ORM1	chr9	117093105	-
3UTR-intron	ENST00000400274	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000400274	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000427143	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000318711	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000417564	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000457905	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000466639	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-intron	ENST00000435722	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000400274		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000427143		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000318711		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000417564		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000457905		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000466639		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000435722		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
3UTR-intron	ENST00000479654	ENST00000479654		ChiTaRS3.1			BE966294	DIP2A	chr21	47988181	-	DIP2A	chr11	63393615	+
intron-3CDS	ENST00000339976	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000339976	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000339976	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000004980	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000004980	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000448372	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000448372	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000551330	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000551330	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549518	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000549518	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000549595	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000549595	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000420083		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000449870		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000318511		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000407004		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000589998		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000250241		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000592763		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000588657		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000547886	ENST00000590261		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-intron	ENST00000547886	ENST00000586544		ChiTaRS3.1			CD367536	SENP1	chr12	48479325	-	ILF3	chr19	10791944	-
intron-3CDS	ENST00000363840	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363840	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363840	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000363840	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000365524	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000365524	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000365524	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000365524	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000364822	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364822	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364822	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000364822	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000363859	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363859	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363859	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000363859	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000385578	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000385578	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000385578	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000385578	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000363146	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363146	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000363146	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000363146	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000364084	ENST00000255108		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364084	ENST00000412950		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-intron	ENST00000364084	ENST00000396758		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3UTR	ENST00000364084	ENST00000529729		ChiTaRS3.1			BG332865	GAS5	chr1	173835899	-	DPH2	chr1	44436638	+
intron-3CDS	ENST00000423245	ENST00000367498		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000423245	ENST00000459929		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000423245	ENST00000392007		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000423245	ENST00000367497		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-3CDS	ENST00000317905	ENST00000367498		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000317905	ENST00000459929		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000317905	ENST00000392007		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000317905	ENST00000367497		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-3CDS	ENST00000420326	ENST00000367498		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000420326	ENST00000459929		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000420326	ENST00000392007		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000420326	ENST00000367497		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-3CDS	ENST00000340830	ENST00000367498		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000340830	ENST00000459929		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000340830	ENST00000392007		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000340830	ENST00000367497		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-3CDS	ENST00000584999	ENST00000367498		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000584999	ENST00000459929		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000584999	ENST00000392007		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000584999	ENST00000367497		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-3CDS	ENST00000443199	ENST00000367498		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000443199	ENST00000459929		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-5UTR	ENST00000443199	ENST00000392007		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000443199	ENST00000367497		ChiTaRS3.1			DA286401	RECQL5	chr17	73630284	+	IVNS1ABP	chr1	185274778	-
intron-intron	ENST00000542955	ENST00000052754		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000425043		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-5UTR	ENST00000542955	ENST00000393155		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000228329		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000303320		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-5UTR	ENST00000542955	ENST00000552962		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000441303		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000420120		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000547568		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000456569		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000546370		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000542955	ENST00000546745		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-5UTR	ENST00000542955	ENST00000550099		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-5UTR	ENST00000542955	ENST00000551354		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-5UTR	ENST00000542955	ENST00000548768		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000052754		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000425043		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-5UTR	ENST00000269593	ENST00000393155		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000228329		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000303320		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-5UTR	ENST00000269593	ENST00000552962		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000441303		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000420120		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000547568		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000456569		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000546370		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-intron	ENST00000269593	ENST00000546745		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-5UTR	ENST00000269593	ENST00000550099		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-5UTR	ENST00000269593	ENST00000551354		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
3UTR-5UTR	ENST00000269593	ENST00000548768		ChiTaRS3.1			BP289909	IGFBP4	chr17	38613815	+	DCN	chr12	91573256	-
intron-intron	ENST00000351698	ENST00000262033		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000537473		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000414274		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000436399		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000448157		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000351698	ENST00000456859		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000262033		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000537473		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000414274		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000436399		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000448157		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
intron-intron	ENST00000473084	ENST00000456859		ChiTaRS3.1			BU633956	TOR1A	chr9	132583908	+	PTGES3	chr12	57080509	+
5CDS-intron	ENST00000339399	ENST00000408771		ChiTaRS3.1			CA417969	ANP32B	chr9	100777683	-	MIR548H3	chr6	97591129	+
intron-intron	ENST00000473205	ENST00000408771		ChiTaRS3.1			CA417969	ANP32B	chr9	100777683	-	MIR548H3	chr6	97591129	+
intron-3CDS	ENST00000342183	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000342183	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000342183	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000342183	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000342183	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401710	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401710	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401710	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401710	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000401710	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000404971	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000404971	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000404971	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000404971	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000404971	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406316	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406316	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406316	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406316	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000406316	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405472	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405472	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405472	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405472	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000405472	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401669	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401669	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401669	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000401669	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000401669	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406859	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406859	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406859	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000406859	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000406859	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000402717	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000402717	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000402717	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000402717	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000402717	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000331040	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000331040	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000331040	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000331040	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000331040	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405581	ENST00000301194		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405581	ENST00000376530		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405581	ENST00000391739		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3CDS	ENST00000405581	ENST00000376531		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-intron	ENST00000405581	ENST00000489425		ChiTaRS3.1			BI754520	NRXN1	chr2	51255855	-	TTYH1	chr19	54926798	+
intron-3UTR	ENST00000334206	ENST00000315717		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000334206	ENST00000295685		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-intron	ENST00000334206	ENST00000477992		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000296733	ENST00000315717		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000296733	ENST00000295685		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-intron	ENST00000296733	ENST00000477992		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000381375	ENST00000315717		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000381375	ENST00000295685		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-intron	ENST00000381375	ENST00000477992		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000322374	ENST00000315717		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000322374	ENST00000295685		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-intron	ENST00000322374	ENST00000477992		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000331730	ENST00000315717		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000331730	ENST00000295685		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-intron	ENST00000331730	ENST00000477992		ChiTaRS3.1			AU119597	CDC20B	chr5	54460030	+	ARPC2	chr2	219118836	+
intron-3UTR	ENST00000426548	ENST00000248553		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000426548	ENST00000429938		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000330514	ENST00000248553		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000330514	ENST00000429938		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000590758	ENST00000248553		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000590758	ENST00000429938		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000592524	ENST00000248553		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
intron-3UTR	ENST00000592524	ENST00000429938		ChiTaRS3.1			R77849	GJC1	chr17	42878774	-	HSPB1	chr7	75933535	+
5CDS-intron	ENST00000300413	ENST00000228140		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
5CDS-5UTR	ENST00000300413	ENST00000526895		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
5CDS-5UTR	ENST00000300413	ENST00000525634		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
3UTR-intron	ENST00000579618	ENST00000228140		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
3UTR-5UTR	ENST00000579618	ENST00000526895		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
3UTR-5UTR	ENST00000579618	ENST00000525634		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
5CDS-intron	ENST00000582475	ENST00000228140		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
5CDS-5UTR	ENST00000582475	ENST00000526895		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
5CDS-5UTR	ENST00000582475	ENST00000525634		ChiTaRS3.1			BU935289	SNRPD1	chr18	19209056	+	RPS13	chr11	17096746	-
5CDS-5UTR	ENST00000369784	ENST00000355630		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000369784	ENST00000396617		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000369784	ENST00000402042		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-intron	ENST00000369784	ENST00000466278		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000369784	ENST00000407029		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000369784	ENST00000402630		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000487146	ENST00000355630		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000487146	ENST00000396617		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000487146	ENST00000402042		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-intron	ENST00000487146	ENST00000466278		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000487146	ENST00000407029		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000487146	ENST00000402630		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000602849	ENST00000355630		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000602849	ENST00000396617		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000602849	ENST00000402042		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-intron	ENST00000602849	ENST00000466278		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000602849	ENST00000407029		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
5CDS-5UTR	ENST00000602849	ENST00000402630		ChiTaRS3.1			AJ303089	RBM15	chr1	110884890	+	MKL1	chr22	40859291	-
Frame-shit	ENST00000523764	ENST00000265362		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
Frame-shit	ENST00000523764	ENST00000436949		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
5CDS-intron	ENST00000523764	ENST00000471474		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
Frame-shit	ENST00000521508	ENST00000265362		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
Frame-shit	ENST00000521508	ENST00000436949		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
5CDS-intron	ENST00000521508	ENST00000471474		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
intron-3CDS	ENST00000519151	ENST00000265362		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
intron-3CDS	ENST00000519151	ENST00000436949		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
intron-intron	ENST00000519151	ENST00000471474		ChiTaRS3.1			BF700780	ALG11	chr13	52586598	+	SEMA3A	chr7	83592665	-
3UTR-3CDS	ENST00000344063	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000344063	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000344063	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000344063	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-intron	ENST00000344063	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000431533	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000431533	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000431533	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000431533	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-intron	ENST00000431533	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000428193	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000428193	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000428193	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000428193	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-intron	ENST00000428193	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000558815	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000558815	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000558815	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000558815	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-intron	ENST00000558815	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-3CDS	ENST00000560583	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000560583	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000560583	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000560583	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-intron	ENST00000560583	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000560055	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000560055	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000560055	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000560055	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-intron	ENST00000560055	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-3CDS	ENST00000559463	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000559463	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000559463	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000559463	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-intron	ENST00000559463	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-3CDS	ENST00000558131	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000558131	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000558131	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-5UTR	ENST00000558131	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
3UTR-intron	ENST00000558131	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000558752	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000558752	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000558752	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000558752	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-intron	ENST00000558752	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000458349	ENST00000229239		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000458349	ENST00000396856		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000458349	ENST00000396861		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-5UTR	ENST00000458349	ENST00000396859		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-intron	ENST00000458349	ENST00000396858		ChiTaRS3.1			AW498880	RPL28	chr19	55899730	+	GAPDH	chr12	6644002	+
intron-3CDS	ENST00000535300	ENST00000333891		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-3CDS	ENST00000535300	ENST00000423517		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-intron	ENST00000535300	ENST00000437081		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-intron	ENST00000535300	ENST00000426442		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-3CDS	ENST00000496055	ENST00000333891		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-3CDS	ENST00000496055	ENST00000423517		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-intron	ENST00000496055	ENST00000437081		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-intron	ENST00000496055	ENST00000426442		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-3CDS	ENST00000319942	ENST00000333891		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-3CDS	ENST00000319942	ENST00000423517		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-intron	ENST00000319942	ENST00000437081		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
3UTR-intron	ENST00000319942	ENST00000426442		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-3CDS	ENST00000370826	ENST00000333891		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-3CDS	ENST00000370826	ENST00000423517		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-intron	ENST00000370826	ENST00000437081		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-intron	ENST00000370826	ENST00000426442		ChiTaRS3.1			Y08201	RABGGTB	chr1	76260496	+	PCLO	chr7	82785329	-
intron-3CDS	ENST00000380079	ENST00000524630		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000529919		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000399039		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000360682		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000361796		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000361391		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000530094		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000428599		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000361332		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000527467		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000415361		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000532245		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000532463		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000528232		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000529986		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000531014		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000358694		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000526772		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000532787		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000533667		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000529873		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000525902		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000529526		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000532649		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000426142		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000532844		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000528621		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000399050		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000526357		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000530748		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000534579		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000380079	ENST00000526938		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000524630		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000529919		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000399039		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000360682		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000361796		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000361391		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000530094		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000428599		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000361332		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000527467		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000415361		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000532245		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000532463		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000528232		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000529986		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000531014		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000358694		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000526772		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000532787		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000533667		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000529873		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000525902		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000529526		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000532649		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000426142		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000532844		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000528621		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000399050		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000526357		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000530748		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000534579		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000301959	ENST00000526938		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000524630		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000529919		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000399039		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000360682		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000361796		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000361391		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000530094		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000428599		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000361332		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000527467		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000415361		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000532245		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000532463		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000528232		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000529986		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000531014		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000358694		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000526772		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000532787		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000533667		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000529873		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000525902		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000529526		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000532649		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000426142		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000532844		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000528621		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000399050		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000526357		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000530748		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000534579		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
intron-3CDS	ENST00000414498	ENST00000526938		ChiTaRS3.1			BF987948	STEAP4	chr7	87912372	-	CTNND1	chr11	57569332	+
Frame-shit	ENST00000303688	ENST00000340353		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000303688	ENST00000532959		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000303688	ENST00000305494		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000303688	ENST00000535167		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
5CDS-intron	ENST00000303688	ENST00000355734		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000340353		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000532959		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000305494		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
Frame-shit	ENST00000383794	ENST00000535167		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
5CDS-intron	ENST00000383794	ENST00000355734		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000340353		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000532959		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000305494		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-3CDS	ENST00000476763	ENST00000535167		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
intron-intron	ENST00000476763	ENST00000355734		ChiTaRS3.1			BF664636	CCDC174	chr3	14697136	+	TMEM135	chr11	87029177	+
In-frame	ENST00000418530	ENST00000375001		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
5CDS-intron	ENST00000418530	ENST00000467052		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
Frame-shit	ENST00000256707	ENST00000375001		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
5CDS-intron	ENST00000256707	ENST00000467052		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
Frame-shit	ENST00000427284	ENST00000375001		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
5CDS-intron	ENST00000427284	ENST00000467052		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
Frame-shit	ENST00000473731	ENST00000375001		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
5CDS-intron	ENST00000473731	ENST00000467052		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
intron-3CDS	ENST00000319688	ENST00000375001		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
intron-intron	ENST00000319688	ENST00000467052		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
intron-3CDS	ENST00000436566	ENST00000375001		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
intron-intron	ENST00000436566	ENST00000467052		ChiTaRS3.1			BI059302	KIDINS220	chr2	8876997	-	COL15A1	chr9	101816906	+
3UTR-3UTR	ENST00000262366	ENST00000379607		ChiTaRS3.1			BQ436116	GLIS2	chr16	4388373	+	EIF1AX	chrX	20144883	-
3UTR-intron	ENST00000262366	ENST00000379593		ChiTaRS3.1			BQ436116	GLIS2	chr16	4388373	+	EIF1AX	chrX	20144883	-
3UTR-3UTR	ENST00000433375	ENST00000379607		ChiTaRS3.1			BQ436116	GLIS2	chr16	4388373	+	EIF1AX	chrX	20144883	-
3UTR-intron	ENST00000433375	ENST00000379593		ChiTaRS3.1			BQ436116	GLIS2	chr16	4388373	+	EIF1AX	chrX	20144883	-
intron-3CDS	ENST00000377474	ENST00000487694		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-3CDS	ENST00000377474	ENST00000461745		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-3CDS	ENST00000377474	ENST00000332191		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-intron	ENST00000377474	ENST00000469233		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-3CDS	ENST00000317765	ENST00000487694		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-3CDS	ENST00000317765	ENST00000461745		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-3CDS	ENST00000317765	ENST00000332191		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
intron-intron	ENST00000317765	ENST00000469233		ChiTaRS3.1			DA496044	KCTD12	chr13	77460491	-	ROBO2	chr3	77595513	+
5UTR-3CDS	ENST00000591289	ENST00000301318		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-intron	ENST00000591289	ENST00000591844		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-intron	ENST00000591289	ENST00000594386		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-3CDS	ENST00000291187	ENST00000301318		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-intron	ENST00000291187	ENST00000591844		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-intron	ENST00000291187	ENST00000594386		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-3CDS	ENST00000588931	ENST00000301318		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-intron	ENST00000588931	ENST00000591844		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5UTR-intron	ENST00000588931	ENST00000594386		ChiTaRS3.1			CR749659	ZNF229	chr19	44951700	-	ZFP28	chr19	57065050	+
5CDS-3UTR	ENST00000222214	ENST00000311604		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000222214	ENST00000381775		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000222214	ENST00000405957		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000222214	ENST00000406638		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000222214	ENST00000485341		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-intron	ENST00000222214	ENST00000599825		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000591470	ENST00000311604		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000591470	ENST00000381775		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000591470	ENST00000405957		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000591470	ENST00000406638		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000591470	ENST00000485341		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-intron	ENST00000591470	ENST00000599825		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000457854	ENST00000311604		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000457854	ENST00000381775		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000457854	ENST00000405957		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000457854	ENST00000406638		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000457854	ENST00000485341		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-intron	ENST00000457854	ENST00000599825		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000422947	ENST00000311604		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000422947	ENST00000381775		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000422947	ENST00000405957		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000422947	ENST00000406638		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-3UTR	ENST00000422947	ENST00000485341		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
5CDS-intron	ENST00000422947	ENST00000599825		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000588242	ENST00000311604		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000588242	ENST00000381775		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000588242	ENST00000405957		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000588242	ENST00000406638		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-3UTR	ENST00000588242	ENST00000485341		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-intron	ENST00000588242	ENST00000599825		ChiTaRS3.1			AA714638	GCDH	chr19	13010345	-	LSP1	chr11	1913063	-
intron-intron	ENST00000390548	ENST00000599470		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000321944		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000358301		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000597766		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000593690		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000599386		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000435673		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-intron	ENST00000390548	ENST00000360442		ChiTaRS3.1			BC004476	IGHG1	chr14	106320325	-	PAK4	chr19	39634231	+
intron-3UTR	ENST00000375067	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000375067	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000375055	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000375055	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000375076	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000375076	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000375070	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000375070	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000438221	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000438221	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000375065	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000375065	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000375069	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000375069	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000538695	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000538695	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000424145	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000424145	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000426320	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000426320	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000427822	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000427822	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000549839	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000549839	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551378	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551378	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551244	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551244	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000550885	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000550885	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000547213	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000547213	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000548935	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000548935	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000441180	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000441180	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000453588	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000453588	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000436456	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000436456	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000548464	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000548464	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000552991	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000552991	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000550562	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000550562	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000547770	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000547770	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000552621	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000552621	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000548959	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000548959	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000448768	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000448768	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000452945	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000452945	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000426138	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000426138	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000549227	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000549227	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000552209	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000552209	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000552891	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000552891	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000550441	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000550441	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000546535	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000546535	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000548009	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000548009	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000383279	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000383279	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000383275	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000383275	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000451115	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000451115	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551254	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551254	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000547328	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000547328	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000548034	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000548034	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000549168	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000549168	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000549776	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000549776	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000550854	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000550854	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000412470	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000412470	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000449037	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000449037	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000456918	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000456918	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000549758	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000549758	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000550959	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000550959	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000547651	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000547651	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000552517	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000552517	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000547155	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000547155	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000553014	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000553014	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000441804	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000441804	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000432831	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000432831	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000447921	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000447921	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551827	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551827	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551381	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551381	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000549626	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000549626	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000550196	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000550196	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551677	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551677	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-3UTR	ENST00000551684	ENST00000372325		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000551684	ENST00000372327		ChiTaRS3.1			CA435533	AGER	chr6	3496582	+	SFTPA2	chr10	81315815	+
intron-intron	ENST00000394332	ENST00000256496		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000394332	ENST00000419534		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000394332	ENST00000468010		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000394333	ENST00000256496		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000394333	ENST00000419534		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000394333	ENST00000468010		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000479035	ENST00000256496		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000479035	ENST00000419534		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000479035	ENST00000468010		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
5CDS-intron	ENST00000245857	ENST00000256496		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
5CDS-intron	ENST00000245857	ENST00000419534		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
5CDS-intron	ENST00000245857	ENST00000468010		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000577407	ENST00000256496		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000577407	ENST00000419534		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-intron	ENST00000577407	ENST00000468010		ChiTaRS3.1			DR002474	RPL23	chr17	37006334	-	ARL8B	chr3	5220057	-
intron-3UTR	ENST00000265593	ENST00000488633		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-intron	ENST00000265593	ENST00000469320		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-3UTR	ENST00000344937	ENST00000488633		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-intron	ENST00000344937	ENST00000469320		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-3UTR	ENST00000423355	ENST00000488633		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-intron	ENST00000423355	ENST00000469320		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-3UTR	ENST00000434054	ENST00000488633		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-intron	ENST00000434054	ENST00000469320		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-3UTR	ENST00000457512	ENST00000488633		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-intron	ENST00000457512	ENST00000469320		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-3UTR	ENST00000475279	ENST00000488633		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
intron-intron	ENST00000475279	ENST00000469320		ChiTaRS3.1			AA454162	CLCN2	chr3	184076564	-	CIAO1	chr2	96937163	+
5CDS-intron	ENST00000260970	ENST00000311380		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000260970	ENST00000375250		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000260970	ENST00000492028		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000260970	ENST00000344936		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000260970	ENST00000396144		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000260970	ENST00000375245		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000409714	ENST00000311380		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000409714	ENST00000375250		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000409714	ENST00000492028		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000409714	ENST00000344936		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000409714	ENST00000396144		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000409714	ENST00000375245		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000462903	ENST00000311380		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000462903	ENST00000375250		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000462903	ENST00000492028		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000462903	ENST00000344936		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000462903	ENST00000396144		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000462903	ENST00000375245		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000448752	ENST00000311380		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000448752	ENST00000375250		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000448752	ENST00000492028		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000448752	ENST00000344936		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000448752	ENST00000396144		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
5CDS-intron	ENST00000448752	ENST00000375245		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
3UTR-intron	ENST00000482772	ENST00000311380		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
3UTR-intron	ENST00000482772	ENST00000375250		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
3UTR-intron	ENST00000482772	ENST00000492028		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
3UTR-intron	ENST00000482772	ENST00000344936		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
3UTR-intron	ENST00000482772	ENST00000396144		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
3UTR-intron	ENST00000482772	ENST00000375245		ChiTaRS3.1			BG010044	PPIG	chr2	170488381	+	ARHGAP12	chr10	32136170	-
intron-intron	ENST00000548567	ENST00000216297		ChiTaRS3.1			AI336282	CS	chr12	56665809	+	SUPT16H	chr14	21828574	+
intron-intron	ENST00000548567	ENST00000555943		ChiTaRS3.1			AI336282	CS	chr12	56665809	+	SUPT16H	chr14	21828574	+
intron-intron	ENST00000351328	ENST00000216297		ChiTaRS3.1			AI336282	CS	chr12	56665809	+	SUPT16H	chr14	21828574	+
intron-intron	ENST00000351328	ENST00000555943		ChiTaRS3.1			AI336282	CS	chr12	56665809	+	SUPT16H	chr14	21828574	+
intron-intron	ENST00000542324	ENST00000216297		ChiTaRS3.1			AI336282	CS	chr12	56665809	+	SUPT16H	chr14	21828574	+
intron-intron	ENST00000542324	ENST00000555943		ChiTaRS3.1			AI336282	CS	chr12	56665809	+	SUPT16H	chr14	21828574	+
intron-3CDS	ENST00000360822	ENST00000395211		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000360822	ENST00000259365		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000360822	ENST00000375175		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000359309	ENST00000395211		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000359309	ENST00000259365		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000359309	ENST00000375175		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000349780	ENST00000395211		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000349780	ENST00000259365		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000349780	ENST00000375175		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000360190	ENST00000395211		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000360190	ENST00000259365		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000360190	ENST00000375175		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000480467	ENST00000395211		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000480467	ENST00000259365		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-3CDS	ENST00000480467	ENST00000375175		ChiTaRS3.1			BG700839	CDK5RAP2	chr9	123334296	-	TMOD1	chr9	100328174	+
intron-intron	ENST00000256854	ENST00000408388		ChiTaRS3.1			AW602542	NARS	chr18	55269624	-	PVT1	chr8	128910187	+
intron-intron	ENST00000423481	ENST00000408388		ChiTaRS3.1			AW602542	NARS	chr18	55269624	-	PVT1	chr8	128910187	+
intron-3CDS	ENST00000343470	ENST00000347401		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000343470	ENST00000353578		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000343470	ENST00000295550		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000343470	ENST00000472056		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000343470	ENST00000409809		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000343470	ENST00000346358		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-intron	ENST00000343470	ENST00000392004		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-intron	ENST00000343470	ENST00000392003		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-intron	ENST00000343470	ENST00000473258		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000452476	ENST00000347401		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000452476	ENST00000353578		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000452476	ENST00000295550		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000452476	ENST00000472056		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000452476	ENST00000409809		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-3CDS	ENST00000452476	ENST00000346358		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-intron	ENST00000452476	ENST00000392004		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-intron	ENST00000452476	ENST00000392003		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
intron-intron	ENST00000452476	ENST00000473258		ChiTaRS3.1			BU616556	LYAR	chr4	4283622	+	COL6A3	chr2	238275370	+
5CDS-3UTR	ENST00000402363	ENST00000233813		ChiTaRS3.1			AI278389	NASP	chr1	46083228	-	IGFBP5	chr2	217538895	+
5CDS-3UTR	ENST00000537798	ENST00000233813		ChiTaRS3.1			AI278389	NASP	chr1	46083228	-	IGFBP5	chr2	217538895	+
5CDS-3UTR	ENST00000350030	ENST00000233813		ChiTaRS3.1			AI278389	NASP	chr1	46083228	-	IGFBP5	chr2	217538895	+
5CDS-3UTR	ENST00000372052	ENST00000233813		ChiTaRS3.1			AI278389	NASP	chr1	46083228	-	IGFBP5	chr2	217538895	+
5CDS-3UTR	ENST00000351223	ENST00000233813		ChiTaRS3.1			AI278389	NASP	chr1	46083228	-	IGFBP5	chr2	217538895	+
3UTR-3UTR	ENST00000530073	ENST00000233813		ChiTaRS3.1			AI278389	NASP	chr1	46083228	-	IGFBP5	chr2	217538895	+
In-frame	ENST00000378628	ENST00000378482		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000378628	ENST00000422612		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000378628	ENST00000545599		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000378628	ENST00000286824		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000378628	ENST00000488893		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000378482		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000422612		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000545599		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000286824		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000491253	ENST00000488893		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000378482		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000422612		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000545599		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000286824		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000543642	ENST00000488893		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000378482		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000422612		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000545599		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000286824		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000542554	ENST00000488893		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000378482		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000422612		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000545599		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000286824		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000449135	ENST00000488893		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000378482		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000422612		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000545599		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000286824		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000463135	ENST00000488893		ChiTaRS3.1			DC411619	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA716544	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
In-frame	ENST00000332050	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332050	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332050	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332050	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332050	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000397938	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000397938	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000397938	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000397938	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000397938	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000406548	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000406548	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000406548	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000406548	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000406548	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000331029	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000331029	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000331029	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000331029	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000331029	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000414183	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000414183	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000414183	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000414183	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000414183	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000333395	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000333395	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000333395	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000333395	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000333395	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332035	ENST00000525560		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332035	ENST00000344954		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332035	ENST00000527786		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332035	ENST00000534087		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
In-frame	ENST00000332035	ENST00000281428		ChiTaRS3.1			S72620	EWSR1	chr22	29683123	+	FLI1	chr11	128679052	+
intron-5UTR	ENST00000261699	ENST00000382582		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000355994		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000397875		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000397866		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000397865		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000527041		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000261699	ENST00000359645		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000261699	ENST00000528160		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000261699	ENST00000397869		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000354542		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000526111		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000580402		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000579129		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000578193		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000397863		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000397860		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000261699	ENST00000487778		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000382582		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000355994		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000397875		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000397866		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000397865		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000527041		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000267436	ENST00000359645		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000267436	ENST00000528160		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000267436	ENST00000397869		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000354542		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000526111		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000580402		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000579129		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000578193		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000397863		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000397860		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000267436	ENST00000487778		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000382582		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000355994		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000397875		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000397866		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000397865		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000527041		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000421284	ENST00000359645		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000421284	ENST00000528160		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000421284	ENST00000397869		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000354542		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000526111		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000580402		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000579129		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000578193		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000397863		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000397860		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000421284	ENST00000487778		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000382582		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000355994		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000397875		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000397866		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000397865		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000527041		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000555423	ENST00000359645		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000555423	ENST00000528160		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000555423	ENST00000397869		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000354542		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000526111		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000580402		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000579129		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000578193		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000397863		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000397860		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555423	ENST00000487778		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000382582		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000355994		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000397875		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000397866		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000397865		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000527041		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000555610	ENST00000359645		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000555610	ENST00000528160		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000555610	ENST00000397869		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000354542		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000526111		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000580402		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000579129		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000578193		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000397863		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000397860		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000555610	ENST00000487778		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000382582		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000355994		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000397875		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000397866		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000397865		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000527041		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000556393	ENST00000359645		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000556393	ENST00000528160		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-intron	ENST00000556393	ENST00000397869		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000354542		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000526111		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000580402		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000579129		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000578193		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000397863		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000397860		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-5UTR	ENST00000556393	ENST00000487778		ChiTaRS3.1			DA137061	L2HGDH	chr14	50712199	-	MBP	chr18	74729012	-
intron-3CDS	ENST00000592984	ENST00000510123		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-3CDS	ENST00000592984	ENST00000389158		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-intron	ENST00000592984	ENST00000507413		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-intron	ENST00000592984	ENST00000509257		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-3CDS	ENST00000004982	ENST00000510123		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-3CDS	ENST00000004982	ENST00000389158		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-intron	ENST00000004982	ENST00000507413		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-intron	ENST00000004982	ENST00000509257		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-3CDS	ENST00000587965	ENST00000510123		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-3CDS	ENST00000587965	ENST00000389158		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-intron	ENST00000587965	ENST00000507413		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
intron-intron	ENST00000587965	ENST00000509257		ChiTaRS3.1			AJ710016	HSPB6	chr19	36245820	-	NOP16	chr5	175812315	-
Frame-shit	ENST00000406697	ENST00000231061		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
5CDS-intron	ENST00000406697	ENST00000537849		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
Frame-shit	ENST00000328916	ENST00000231061		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
5CDS-intron	ENST00000328916	ENST00000537849		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
Frame-shit	ENST00000360817	ENST00000231061		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
5CDS-intron	ENST00000360817	ENST00000537849		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
Frame-shit	ENST00000402681	ENST00000231061		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
5CDS-intron	ENST00000402681	ENST00000537849		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
intron-3CDS	ENST00000495061	ENST00000231061		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
intron-intron	ENST00000495061	ENST00000537849		ChiTaRS3.1			BM992057	C1S	chr12	7177841	-	SPARC	chr5	151043681	+
5CDS-5UTR	ENST00000409469	ENST00000261267		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000409469	ENST00000549690		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000409469	ENST00000548839		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000602748	ENST00000261267		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000602748	ENST00000549690		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000602748	ENST00000548839		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000325222	ENST00000261267		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000325222	ENST00000549690		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
5CDS-5UTR	ENST00000325222	ENST00000548839		ChiTaRS3.1			BP294789	CUL1	chr7	148454157	+	LYZ	chr12	69742161	+
intron-intron	ENST00000336418	ENST00000448841		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000336418	ENST00000369889		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000558011	ENST00000448841		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000558011	ENST00000369889		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000560940	ENST00000448841		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000560940	ENST00000369889		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000560771	ENST00000448841		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-intron	ENST00000560771	ENST00000369889		ChiTaRS3.1			AV704538	AP3S2	chr15	90378232	-	WBP1L	chr10	104591295	-
intron-3UTR	ENST00000368321	ENST00000382582		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368321	ENST00000355994		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368321	ENST00000397875		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368321	ENST00000397866		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368321	ENST00000397865		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368321	ENST00000527041		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368321	ENST00000359645		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000528160		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000397869		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000354542		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000526111		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000580402		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000579129		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000578193		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000397863		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000397860		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368321	ENST00000487778		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000382582		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000355994		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000397875		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000397866		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000397865		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000527041		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368320	ENST00000359645		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000528160		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000397869		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000354542		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000526111		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000580402		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000579129		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000578193		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000397863		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000397860		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368320	ENST00000487778		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000382582		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000355994		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000397875		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000397866		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000397865		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000527041		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000368319	ENST00000359645		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000528160		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000397869		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000354542		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000526111		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000580402		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000579129		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000578193		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000397863		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000397860		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000368319	ENST00000487778		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000382582		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000355994		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000397875		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000397866		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000397865		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000527041		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3UTR	ENST00000482337	ENST00000359645		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000528160		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000397869		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000354542		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000526111		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000580402		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000579129		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000578193		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000397863		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000397860		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-intron	ENST00000482337	ENST00000487778		ChiTaRS3.1			BP328028	KIAA0907	chr1	155884853	-	MBP	chr18	74691969	-
intron-3CDS	ENST00000378300	ENST00000368533		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000469717		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000330188		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000341485		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000341372		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000328159		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000271850		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000302206		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000368531		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000323144		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378300	ENST00000368530		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-3CDS	ENST00000378292	ENST00000368533		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000469717		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000330188		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000341485		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000341372		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000328159		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000271850		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000302206		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000368531		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000323144		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000378292	ENST00000368530		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-3CDS	ENST00000329305	ENST00000368533		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000469717		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000330188		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000341485		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000341372		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000328159		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000271850		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000302206		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000368531		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000323144		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000329305	ENST00000368530		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-3CDS	ENST00000360958	ENST00000368533		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000469717		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000330188		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000341485		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000341372		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000328159		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000271850		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000302206		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000368531		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000323144		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-5UTR	ENST00000360958	ENST00000368530		ChiTaRS3.1			F00784	TPM2	chr9	35685682	-	TPM3	chr1	154145590	-
intron-3CDS	ENST00000380502	ENST00000424970		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-3CDS	ENST00000380502	ENST00000394833		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-3CDS	ENST00000380502	ENST00000356736		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-5UTR	ENST00000380502	ENST00000510255		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-3CDS	ENST00000380496	ENST00000424970		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-3CDS	ENST00000380496	ENST00000394833		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-3CDS	ENST00000380496	ENST00000356736		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
intron-5UTR	ENST00000380496	ENST00000510255		ChiTaRS3.1			CB128514	HAUS6	chr9	19063654	-	SLC39A8	chr4	103226183	-
5UTR-3CDS	ENST00000485978	ENST00000549091		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-3CDS	ENST00000485978	ENST00000293879		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-intron	ENST00000485978	ENST00000547543		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-intron	ENST00000485978	ENST00000547944		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5UTR-intron	ENST00000485978	ENST00000315764		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371897	ENST00000549091		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371897	ENST00000293879		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371897	ENST00000547543		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371897	ENST00000547944		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371897	ENST00000315764		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371899	ENST00000549091		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
Frame-shit	ENST00000371899	ENST00000293879		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371899	ENST00000547543		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371899	ENST00000547944		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
5CDS-intron	ENST00000371899	ENST00000315764		ChiTaRS3.1			BP288564	SLC2A6	chr9	136343376	-	WDR90	chr16	705670	+
intron-3CDS	ENST00000499499	ENST00000541515		ChiTaRS3.1			DW414891	DNAJC3-AS1	chr13	96325550	-	LUC7L2	chr7	139092035	+
5UTR-intron	ENST00000332149	ENST00000398907		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398905		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000288319		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398897		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000398911		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000398910		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000417133		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000442448		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000453032		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000398919		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000332149	ENST00000429727		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000332149	ENST00000485493		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398907		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398905		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000288319		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398897		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000398911		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000398910		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000417133		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000442448		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000453032		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000398919		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000398585	ENST00000429727		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000398585	ENST00000485493		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398907		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398905		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000288319		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398897		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000398911		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000398910		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000417133		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000442448		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000453032		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000398919		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-intron	ENST00000458356	ENST00000429727		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-5UTR	ENST00000458356	ENST00000485493		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398907		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398905		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000288319		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398897		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000398911		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000398910		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000417133		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000442448		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000453032		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000398919		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-intron	ENST00000497881	ENST00000429727		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
5UTR-5UTR	ENST00000497881	ENST00000485493		ChiTaRS3.1			DQ831522	TMPRSS2	chr21	42880006	-	ERG	chr21	39956872	-
intron-3CDS	ENST00000317995	ENST00000261861		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000317995	ENST00000566799		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000317995	ENST00000540068		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000317995	ENST00000543950		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000528666	ENST00000261861		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000528666	ENST00000566799		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000528666	ENST00000540068		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-3CDS	ENST00000528666	ENST00000543950		ChiTaRS3.1			DA070111	CA8	chr8	61193904	-	CORO2B	chr15	68987546	+
intron-intron	ENST00000464611	ENST00000599539		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000464611	ENST00000339471		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000464611	ENST00000251453		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000464611	ENST00000601655		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000331789	ENST00000599539		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-intron	ENST00000331789	ENST00000339471		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000331789	ENST00000251453		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-5UTR	ENST00000331789	ENST00000601655		ChiTaRS3.1			BE732178	ACTB	chr7	5568957	-	RPS16	chr19	39926573	-
intron-3UTR	ENST00000466764	ENST00000369528		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
intron-intron	ENST00000466764	ENST00000060969		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
intron-intron	ENST00000466764	ENST00000506320		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-3UTR	ENST00000376759	ENST00000369528		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000376759	ENST00000060969		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000376759	ENST00000506320		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-3UTR	ENST00000430348	ENST00000369528		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000430348	ENST00000060969		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000430348	ENST00000506320		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
intron-3UTR	ENST00000376755	ENST00000369528		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
intron-intron	ENST00000376755	ENST00000060969		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
intron-intron	ENST00000376755	ENST00000506320		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-3UTR	ENST00000354480	ENST00000369528		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000354480	ENST00000060969		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000354480	ENST00000506320		ChiTaRS3.1			AA465493	RBM3	chrX	48436377	-	SIKE1	chr1	115313470	+
3UTR-intron	ENST00000391857	ENST00000331925		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
3UTR-intron	ENST00000391857	ENST00000573283		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
3UTR-intron	ENST00000391857	ENST00000575842		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
3UTR-intron	ENST00000391857	ENST00000575087		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
intron-intron	ENST00000477613	ENST00000331925		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
intron-intron	ENST00000477613	ENST00000573283		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
intron-intron	ENST00000477613	ENST00000575842		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
intron-intron	ENST00000477613	ENST00000575087		ChiTaRS3.1			BM677070	RPL13A	chr19	49995427	-	ACTG1	chr17	79478723	+
3UTR-3CDS	ENST00000372692	ENST00000531188		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000530164		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000278572		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000534440		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000527446		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000526608		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000524851		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372692	ENST00000529285		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-3CDS	ENST00000409104	ENST00000531188		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000530164		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000278572		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000534440		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000527446		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000526608		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000524851		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000409104	ENST00000529285		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-3CDS	ENST00000322030	ENST00000531188		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000530164		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000278572		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000534440		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000527446		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000526608		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000524851		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000322030	ENST00000529285		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-3CDS	ENST00000372688	ENST00000531188		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000530164		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000278572		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000534440		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000527446		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000526608		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000524851		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
3UTR-intron	ENST00000372688	ENST00000529285		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-3CDS	ENST00000477806	ENST00000531188		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000530164		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000278572		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000534440		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000527446		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000526608		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000524851		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
intron-intron	ENST00000477806	ENST00000529285		ChiTaRS3.1			BG028694	SET	chr9	131457000	+	RPS3	chr11	75115861	+
In-frame	ENST00000373212	ENST00000342505		ChiTaRS3.1			BJ990812	SH3BGRL	chrX	80457745	+	JAK1	chr1	65335158	-
5CDS-intron	ENST00000373212	ENST00000465376		ChiTaRS3.1			BJ990812	SH3BGRL	chrX	80457745	+	JAK1	chr1	65335158	-
3UTR-3CDS	ENST00000481106	ENST00000342505		ChiTaRS3.1			BJ990812	SH3BGRL	chrX	80457745	+	JAK1	chr1	65335158	-
3UTR-intron	ENST00000481106	ENST00000465376		ChiTaRS3.1			BJ990812	SH3BGRL	chrX	80457745	+	JAK1	chr1	65335158	-
5CDS-5UTR	ENST00000277165	ENST00000245185		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000277165	ENST00000563985		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-intron	ENST00000277165	ENST00000561491		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000375389	ENST00000245185		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000375389	ENST00000563985		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-intron	ENST00000375389	ENST00000561491		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000340893	ENST00000245185		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000340893	ENST00000563985		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-intron	ENST00000340893	ENST00000561491		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000333936	ENST00000245185		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-5UTR	ENST00000333936	ENST00000563985		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
5CDS-intron	ENST00000333936	ENST00000561491		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
intron-5UTR	ENST00000475933	ENST00000245185		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
intron-5UTR	ENST00000475933	ENST00000563985		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
intron-intron	ENST00000475933	ENST00000561491		ChiTaRS3.1			BU534183	FAM120A	chr9	96261159	+	MT2A	chr16	56642493	+
3UTR-3UTR	ENST00000343017	ENST00000343017		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-intron	ENST00000343017	ENST00000326277		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000343017	ENST00000381410		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000326277	ENST00000343017		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-intron	ENST00000326277	ENST00000326277		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000326277	ENST00000381410		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000381410	ENST00000343017		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-intron	ENST00000381410	ENST00000326277		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000381410	ENST00000381410		ChiTaRS3.1			AA721713	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3CDS	ENST00000496817	ENST00000304992		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-3CDS	ENST00000496817	ENST00000572621		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-intron	ENST00000496817	ENST00000575116		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-3CDS	ENST00000368719	ENST00000304992		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-3CDS	ENST00000368719	ENST00000572621		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-intron	ENST00000368719	ENST00000575116		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-3CDS	ENST00000368720	ENST00000304992		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-3CDS	ENST00000368720	ENST00000572621		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-intron	ENST00000368720	ENST00000575116		ChiTaRS3.1			AU134329	S100A6	chr1	153507276	-	PRPF8	chr17	1583030	-
intron-5UTR	ENST00000597208	ENST00000412331		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-5UTR	ENST00000597208	ENST00000381683		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000597208	ENST00000406934		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000597208	ENST00000476955		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-5UTR	ENST00000316731	ENST00000412331		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-5UTR	ENST00000316731	ENST00000381683		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000316731	ENST00000406934		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000316731	ENST00000476955		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-5UTR	ENST00000538180	ENST00000412331		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-5UTR	ENST00000538180	ENST00000381683		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000538180	ENST00000406934		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000538180	ENST00000476955		ChiTaRS3.1			CB149589	CCZ1B	chr7	6838737	-	EIF3L	chr22	38245425	+
intron-intron	ENST00000370952	ENST00000355458		ChiTaRS3.1			DA565124	LRRC40	chr1	70640816	-	ACAD11	chr3	132316124	+
intron-intron	ENST00000370952	ENST00000264990		ChiTaRS3.1			DA565124	LRRC40	chr1	70640816	-	ACAD11	chr3	132316124	+
intron-intron	ENST00000370952	ENST00000545291		ChiTaRS3.1			DA565124	LRRC40	chr1	70640816	-	ACAD11	chr3	132316124	+
intron-intron	ENST00000370952	ENST00000481970		ChiTaRS3.1			DA565124	LRRC40	chr1	70640816	-	ACAD11	chr3	132316124	+
intron-intron	ENST00000370952	ENST00000489991		ChiTaRS3.1			DA565124	LRRC40	chr1	70640816	-	ACAD11	chr3	132316124	+
intron-5UTR	ENST00000384756	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000384756	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000364799	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000364799	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000384693	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000384693	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
5CDS-5UTR	ENST00000383926	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
5CDS-intron	ENST00000383926	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000516331	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000516331	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000384706	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000384706	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000363981	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000363981	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000384147	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000384147	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-5UTR	ENST00000365607	ENST00000447750		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-intron	ENST00000365607	ENST00000465640		ChiTaRS3.1			DA285383	SNHG1	chr11	62621378	-	GDI1	chrX	153665511	+
intron-3UTR	ENST00000545280	ENST00000370331		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000545280	ENST00000540033		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000545280	ENST00000543509		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000545280	ENST00000491940		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000266542	ENST00000370331		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000266542	ENST00000540033		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000266542	ENST00000543509		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000266542	ENST00000491940		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000504702	ENST00000370331		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000504702	ENST00000540033		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000504702	ENST00000543509		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000504702	ENST00000491940		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000544702	ENST00000370331		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000544702	ENST00000540033		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000544702	ENST00000543509		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000544702	ENST00000491940		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000545337	ENST00000370331		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-3UTR	ENST00000545337	ENST00000540033		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000545337	ENST00000543509		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-intron	ENST00000545337	ENST00000491940		ChiTaRS3.1			BU624441	C1RL	chr12	7247770	+	EVI5	chr1	92976980	+
intron-5UTR	ENST00000323851	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000323851	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000323851	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000323851	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000323851	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000323851	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000323851	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000323851	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000323851	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000354944	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000354944	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000354944	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000354944	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000354944	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000354944	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000354944	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000354944	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000354944	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000521414	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000521414	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000521414	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000521414	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000521414	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000521414	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000521414	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000521414	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000521414	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000537882	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000537882	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000537882	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000537882	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000537882	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000537882	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000537882	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000537882	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000537882	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000414097	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000414097	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000414097	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000414097	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000414097	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000414097	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000414097	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000414097	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000414097	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518176	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518176	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518176	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518176	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518176	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518176	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518176	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518176	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518176	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000522476	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000522476	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000522476	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000522476	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000522476	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000522476	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000522476	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000522476	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000522476	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518066	ENST00000401722		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518066	ENST00000228318		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518066	ENST00000188376		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518066	ENST00000551917		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-5UTR	ENST00000518066	ENST00000552981		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518066	ENST00000551265		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518066	ENST00000547534		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518066	ENST00000549338		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-intron	ENST00000518066	ENST00000548847		ChiTaRS3.1			BE315098	NDRG1	chr8	134249439	-	SLC25A3	chr12	98987449	+
intron-3CDS	ENST00000306270	ENST00000263239		ChiTaRS3.1			DA722364	IBTK	chr6	82950507	-	DDX18	chr2	118575082	+
intron-3UTR	ENST00000306270	ENST00000474694		ChiTaRS3.1			DA722364	IBTK	chr6	82950507	-	DDX18	chr2	118575082	+
intron-3CDS	ENST00000503631	ENST00000263239		ChiTaRS3.1			DA722364	IBTK	chr6	82950507	-	DDX18	chr2	118575082	+
intron-3UTR	ENST00000503631	ENST00000474694		ChiTaRS3.1			DA722364	IBTK	chr6	82950507	-	DDX18	chr2	118575082	+
intron-3CDS	ENST00000510291	ENST00000263239		ChiTaRS3.1			DA722364	IBTK	chr6	82950507	-	DDX18	chr2	118575082	+
intron-3UTR	ENST00000510291	ENST00000474694		ChiTaRS3.1			DA722364	IBTK	chr6	82950507	-	DDX18	chr2	118575082	+
intron-intron	ENST00000239223	ENST00000526757		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000534127		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000313726		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000357665		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000530438		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000530991		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000526099		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000534278		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000239223	ENST00000531237		ChiTaRS3.1			DB221166	DUSP1	chr5	172198092	-	ST5	chr11	8752755	-
intron-intron	ENST00000553781	ENST00000575270		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000349223		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000329524		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000346183		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000553781	ENST00000535127		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-intron	ENST00000557008	ENST00000575270		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000349223		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000329524		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000346183		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000557008	ENST00000535127		ChiTaRS3.1			BF895700	BCL2L2-PABPN1	chr14	23793869	+	NFATC3	chr16	68260351	+
intron-3UTR	ENST00000371222	ENST00000355299		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000559836		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000559910		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000399440		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000420554		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000348719		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000557854		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000559104		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000371222	ENST00000456667		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-intron	ENST00000371222	ENST00000560517		ChiTaRS3.1			BF916399	JUN	chr1	59247923	-	GMPR2	chr14	24708184	+
intron-3UTR	ENST00000340666	ENST00000226004		ChiTaRS3.1			CD743038	SYN1	chrX	47445941	-	DUSP3	chr17	41846479	+
intron-3UTR	ENST00000340666	ENST00000397937		ChiTaRS3.1			CD743038	SYN1	chrX	47445941	-	DUSP3	chr17	41846479	+
intron-intron	ENST00000340666	ENST00000591618		ChiTaRS3.1			CD743038	SYN1	chrX	47445941	-	DUSP3	chr17	41846479	+
intron-3UTR	ENST00000295987	ENST00000226004		ChiTaRS3.1			CD743038	SYN1	chrX	47445941	-	DUSP3	chr17	41846479	+
intron-3UTR	ENST00000295987	ENST00000397937		ChiTaRS3.1			CD743038	SYN1	chrX	47445941	-	DUSP3	chr17	41846479	+
intron-intron	ENST00000295987	ENST00000591618		ChiTaRS3.1			CD743038	SYN1	chrX	47445941	-	DUSP3	chr17	41846479	+
intron-3CDS	ENST00000244534	ENST00000532636		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-3CDS	ENST00000244534	ENST00000533540		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-3CDS	ENST00000244534	ENST00000453788		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-3CDS	ENST00000244534	ENST00000534624		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-3CDS	ENST00000244534	ENST00000227378		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-3CDS	ENST00000244534	ENST00000534319		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-3CDS	ENST00000244534	ENST00000526110		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
intron-5UTR	ENST00000244534	ENST00000526862		ChiTaRS3.1			BC112920	HIST1H1D	chr6	26235016	-	HSPA8	chr11	122930196	-
3UTR-intron	ENST00000315238	ENST00000536122		ChiTaRS3.1			BX507087	CALML3	chr10	5567635	+	GAS8	chr16	90110929	+
3UTR-3UTR	ENST00000315238	ENST00000268699		ChiTaRS3.1			BX507087	CALML3	chr10	5567635	+	GAS8	chr16	90110929	+
3UTR-intron	ENST00000315238	ENST00000540721		ChiTaRS3.1			BX507087	CALML3	chr10	5567635	+	GAS8	chr16	90110929	+
5UTR-3CDS	ENST00000430629	ENST00000327300		ChiTaRS3.1			DB021997	WASF2	chr1	27816497	-	KHDRBS1	chr1	32495896	+
5UTR-3UTR	ENST00000430629	ENST00000307714		ChiTaRS3.1			DB021997	WASF2	chr1	27816497	-	KHDRBS1	chr1	32495896	+
5UTR-3UTR	ENST00000430629	ENST00000492989		ChiTaRS3.1			DB021997	WASF2	chr1	27816497	-	KHDRBS1	chr1	32495896	+
5UTR-3CDS	ENST00000536657	ENST00000327300		ChiTaRS3.1			DB021997	WASF2	chr1	27816497	-	KHDRBS1	chr1	32495896	+
5UTR-3UTR	ENST00000536657	ENST00000307714		ChiTaRS3.1			DB021997	WASF2	chr1	27816497	-	KHDRBS1	chr1	32495896	+
5UTR-3UTR	ENST00000536657	ENST00000492989		ChiTaRS3.1			DB021997	WASF2	chr1	27816497	-	KHDRBS1	chr1	32495896	+
intron-3CDS	ENST00000294507	ENST00000461988		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-5UTR	ENST00000294507	ENST00000419840		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-5UTR	ENST00000294507	ENST00000394893		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-intron	ENST00000294507	ENST00000475509		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-5UTR	ENST00000294507	ENST00000545601		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-intron	ENST00000294507	ENST00000450476		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-intron	ENST00000294507	ENST00000439269		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-3CDS	ENST00000476492	ENST00000461988		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-5UTR	ENST00000476492	ENST00000419840		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-5UTR	ENST00000476492	ENST00000394893		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-intron	ENST00000476492	ENST00000475509		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-5UTR	ENST00000476492	ENST00000545601		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-intron	ENST00000476492	ENST00000450476		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-intron	ENST00000476492	ENST00000439269		ChiTaRS3.1			BF001401	LAPTM5	chr1	31206536	+	POR	chr7	75609699	-
intron-3CDS	ENST00000264042	ENST00000254480		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-5UTR	ENST00000264042	ENST00000425518		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-3CDS	ENST00000545004	ENST00000254480		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-5UTR	ENST00000545004	ENST00000425518		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-3CDS	ENST00000373287	ENST00000254480		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-5UTR	ENST00000373287	ENST00000425518		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-3CDS	ENST00000479427	ENST00000254480		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
intron-5UTR	ENST00000479427	ENST00000425518		ChiTaRS3.1			AW935056	FARP2	chr2	242383566	+	SMARCC1	chr3	47663799	-
In-frame	ENST00000368533	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368533	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368533	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368533	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000368533	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5UTR-3CDS	ENST00000469717	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5UTR-3CDS	ENST00000469717	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5UTR-3CDS	ENST00000469717	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5UTR-3CDS	ENST00000469717	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5UTR-intron	ENST00000469717	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000330188	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000330188	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000330188	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000330188	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000330188	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341485	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341485	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341485	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341485	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000341485	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341372	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341372	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341372	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000341372	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000341372	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000328159	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000328159	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000328159	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000328159	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000328159	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000271850	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000271850	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000271850	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000271850	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000271850	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
Frame-shit	ENST00000302206	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
Frame-shit	ENST00000302206	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
Frame-shit	ENST00000302206	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
Frame-shit	ENST00000302206	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000302206	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368531	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368531	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368531	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368531	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000368531	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000323144	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000323144	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000323144	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000323144	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000323144	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368530	ENST00000392302		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368530	ENST00000368196		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368530	ENST00000524377		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
In-frame	ENST00000368530	ENST00000358660		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
5CDS-intron	ENST00000368530	ENST00000531606		ChiTaRS3.1			X03541	TPM3	chr1	154142876	-	NTRK1	chr1	156844361	+
intron-5UTR	ENST00000356415	ENST00000269349		ChiTaRS3.1			CR997446	RAP1A	chr1	112162535	+	EIF4A3	chr17	78120850	-
5UTR-5UTR	ENST00000436150	ENST00000269349		ChiTaRS3.1			CR997446	RAP1A	chr1	112162535	+	EIF4A3	chr17	78120850	-
5UTR-5UTR	ENST00000369709	ENST00000269349		ChiTaRS3.1			CR997446	RAP1A	chr1	112162535	+	EIF4A3	chr17	78120850	-
intron-5UTR	ENST00000545460	ENST00000269349		ChiTaRS3.1			CR997446	RAP1A	chr1	112162535	+	EIF4A3	chr17	78120850	-
intron-5UTR	ENST00000494982	ENST00000269349		ChiTaRS3.1			CR997446	RAP1A	chr1	112162535	+	EIF4A3	chr17	78120850	-
3UTR-3UTR	ENST00000325321	ENST00000381346		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
3UTR-intron	ENST00000325321	ENST00000553384		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
3UTR-intron	ENST00000325321	ENST00000428130		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
intron-3UTR	ENST00000391810	ENST00000381346		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
intron-intron	ENST00000391810	ENST00000553384		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
intron-intron	ENST00000391810	ENST00000428130		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
3UTR-3UTR	ENST00000358049	ENST00000381346		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
3UTR-intron	ENST00000358049	ENST00000553384		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
3UTR-intron	ENST00000358049	ENST00000428130		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
intron-3UTR	ENST00000597509	ENST00000381346		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
intron-intron	ENST00000597509	ENST00000553384		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
intron-intron	ENST00000597509	ENST00000428130		ChiTaRS3.1			AA658025	KLK2	chr19	51382393	-	RDH11	chr14	68143994	+
In-frame	ENST00000534358	ENST00000524717		ChiTaRS3.1			DQ886024	KMT2A	chr11	118355690	+	MAML2	chr11	95826683	-
In-frame	ENST00000389506	ENST00000524717		ChiTaRS3.1			DQ886024	KMT2A	chr11	118355690	+	MAML2	chr11	95826683	-
intron-3CDS	ENST00000354520	ENST00000524717		ChiTaRS3.1			DQ886024	KMT2A	chr11	118355690	+	MAML2	chr11	95826683	-
intron-3CDS	ENST00000420751	ENST00000524717		ChiTaRS3.1			DQ886024	KMT2A	chr11	118355690	+	MAML2	chr11	95826683	-
5CDS-5UTR	ENST00000543566	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000543566	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000543566	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000543566	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000315580	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000315580	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000315580	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000315580	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000392435	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000392435	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000392435	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000392435	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000426960	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000426960	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000426960	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000426960	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000453766	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000453766	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000453766	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000453766	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000454885	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000454885	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000454885	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000454885	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000412505	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000412505	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000412505	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000412505	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000439686	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000439686	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000439686	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000439686	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000357866	ENST00000263274		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000357866	ENST00000536218		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000357866	ENST00000427526		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
5CDS-5UTR	ENST00000357866	ENST00000599165		ChiTaRS3.1			BG979982	ARL6IP4	chr12	123466595	+	LIG1	chr19	48668878	-
Frame-shit	ENST00000389467	ENST00000260682		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
5CDS-intron	ENST00000389467	ENST00000461906		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
Frame-shit	ENST00000446231	ENST00000260682		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
5CDS-intron	ENST00000446231	ENST00000461906		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
intron-3CDS	ENST00000565224	ENST00000260682		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
intron-intron	ENST00000565224	ENST00000461906		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
intron-3CDS	ENST00000567737	ENST00000260682		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
intron-intron	ENST00000567737	ENST00000461906		ChiTaRS3.1			AV652799	SMG1	chr16	18856751	-	CYP2C9	chr10	96740952	+
5CDS-intron	ENST00000393078	ENST00000534312		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393078	ENST00000395850		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393078	ENST00000533403		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393078	ENST00000351554		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393078	ENST00000415002		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393078	ENST00000445143		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393078	ENST00000426650		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393078	ENST00000437761		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393078	ENST00000527577		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393078	ENST00000528700		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-intron	ENST00000485588	ENST00000534312		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-3UTR	ENST00000485588	ENST00000395850		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-3UTR	ENST00000485588	ENST00000533403		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-3UTR	ENST00000485588	ENST00000351554		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-3UTR	ENST00000485588	ENST00000415002		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-intron	ENST00000485588	ENST00000445143		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-intron	ENST00000485588	ENST00000426650		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-intron	ENST00000485588	ENST00000437761		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-intron	ENST00000485588	ENST00000527577		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
intron-intron	ENST00000485588	ENST00000528700		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393080	ENST00000534312		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393080	ENST00000395850		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393080	ENST00000533403		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393080	ENST00000351554		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000393080	ENST00000415002		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393080	ENST00000445143		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393080	ENST00000426650		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393080	ENST00000437761		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393080	ENST00000527577		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000393080	ENST00000528700		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000467132	ENST00000534312		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000467132	ENST00000395850		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000467132	ENST00000533403		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000467132	ENST00000351554		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000467132	ENST00000415002		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000467132	ENST00000445143		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000467132	ENST00000426650		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000467132	ENST00000437761		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000467132	ENST00000527577		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000467132	ENST00000528700		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000482740	ENST00000534312		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000482740	ENST00000395850		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000482740	ENST00000533403		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000482740	ENST00000351554		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-3UTR	ENST00000482740	ENST00000415002		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000482740	ENST00000445143		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000482740	ENST00000426650		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000482740	ENST00000437761		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000482740	ENST00000527577		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
5CDS-intron	ENST00000482740	ENST00000528700		ChiTaRS3.1			BF826554	SERPINA3	chr14	95085693	+	CD59	chr11	33730762	-
Frame-shit	ENST00000263598	ENST00000261267		ChiTaRS3.1			CK429413	LCN1	chr9	138414015	+	LYZ	chr12	69746005	+
5CDS-intron	ENST00000263598	ENST00000549690		ChiTaRS3.1			CK429413	LCN1	chr9	138414015	+	LYZ	chr12	69746005	+
5CDS-intron	ENST00000263598	ENST00000548839		ChiTaRS3.1			CK429413	LCN1	chr9	138414015	+	LYZ	chr12	69746005	+
Frame-shit	ENST00000371781	ENST00000261267		ChiTaRS3.1			CK429413	LCN1	chr9	138414015	+	LYZ	chr12	69746005	+
5CDS-intron	ENST00000371781	ENST00000549690		ChiTaRS3.1			CK429413	LCN1	chr9	138414015	+	LYZ	chr12	69746005	+
5CDS-intron	ENST00000371781	ENST00000548839		ChiTaRS3.1			CK429413	LCN1	chr9	138414015	+	LYZ	chr12	69746005	+
intron-intron	ENST00000295522	ENST00000545260		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000545693		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000350537		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000346874		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374789		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374790		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374794		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374788		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000466092		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374776		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000340077		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000544292		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374773		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374768		ChiTaRS3.1			BQ022914	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-3CDS	ENST00000402038	ENST00000355710		ChiTaRS3.1			S71225	PARG	chr10	51582940	+	RET	chr10	43612030	+
intron-3CDS	ENST00000402038	ENST00000340058		ChiTaRS3.1			S71225	PARG	chr10	51582940	+	RET	chr10	43612030	+
intron-3CDS	ENST00000492350	ENST00000355710		ChiTaRS3.1			S71225	PARG	chr10	51582940	+	RET	chr10	43612030	+
intron-3CDS	ENST00000492350	ENST00000340058		ChiTaRS3.1			S71225	PARG	chr10	51582940	+	RET	chr10	43612030	+
intron-intron	ENST00000455485	ENST00000376566		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000376563		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000376548		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000447146		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000473764		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000247140		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000218224		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
intron-intron	ENST00000455485	ENST00000396763		ChiTaRS3.1			AJ706466	GUSBP11	chr22	24037268	-	PQBP1	chrX	48760123	+
3UTR-3CDS	ENST00000305105	ENST00000528416		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
3UTR-3CDS	ENST00000305105	ENST00000415073		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
3UTR-3CDS	ENST00000305105	ENST00000252268		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
3UTR-intron	ENST00000305105	ENST00000532264		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
intron-3CDS	ENST00000492315	ENST00000528416		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
intron-3CDS	ENST00000492315	ENST00000415073		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
intron-3CDS	ENST00000492315	ENST00000252268		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
intron-intron	ENST00000492315	ENST00000532264		ChiTaRS3.1			BM916367	ZNHIT1	chr7	100867343	+	DPF2	chr11	65116353	+
Frame-shit	ENST00000546057	ENST00000262507		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000546057	ENST00000567072		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000546057	ENST00000567933		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
5CDS-intron	ENST00000546057	ENST00000567384		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-3CDS	ENST00000377162	ENST00000262507		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-3CDS	ENST00000377162	ENST00000567072		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-3CDS	ENST00000377162	ENST00000567933		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-intron	ENST00000377162	ENST00000567384		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000328963	ENST00000262507		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000328963	ENST00000567072		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000328963	ENST00000567933		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
5CDS-intron	ENST00000328963	ENST00000567384		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000535250	ENST00000262507		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000535250	ENST00000567072		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
Frame-shit	ENST00000535250	ENST00000567933		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
5CDS-intron	ENST00000535250	ENST00000567384		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
3UTR-3CDS	ENST00000443520	ENST00000262507		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
3UTR-3CDS	ENST00000443520	ENST00000567072		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
3UTR-3CDS	ENST00000443520	ENST00000567933		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
3UTR-intron	ENST00000443520	ENST00000567384		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-3CDS	ENST00000541446	ENST00000262507		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-3CDS	ENST00000541446	ENST00000567072		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-3CDS	ENST00000541446	ENST00000567933		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
intron-intron	ENST00000541446	ENST00000567384		ChiTaRS3.1			AW899099	P2RX7	chr12	121605334	+	COQ9	chr16	57493608	+
5UTR-3CDS	ENST00000507606	ENST00000382456		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
5UTR-3CDS	ENST00000507606	ENST00000411763		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
5UTR-3CDS	ENST00000507606	ENST00000292807		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
5UTR-3CDS	ENST00000507606	ENST00000439647		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
5UTR-intron	ENST00000507606	ENST00000461733		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
intron-3CDS	ENST00000422968	ENST00000382456		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
intron-3CDS	ENST00000422968	ENST00000411763		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
intron-3CDS	ENST00000422968	ENST00000292807		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
intron-3CDS	ENST00000422968	ENST00000439647		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
intron-intron	ENST00000422968	ENST00000461733		ChiTaRS3.1			CB529923	C7orf73	chr7	135347290	-	AP2M1	chr3	183898013	-
5UTR-intron	ENST00000451284	ENST00000542817		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000451284	ENST00000458643		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000451284	ENST00000448012		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000451284	ENST00000519305		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000542817		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000458643		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000448012		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5UTR-intron	ENST00000496997	ENST00000519305		ChiTaRS3.1			AK057335	LINC00692	chr3	25911506	-	NPIPB3	chr16	21742158	+
5CDS-5UTR	ENST00000560079	ENST00000373548		ChiTaRS3.1			BQ688122	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000373541		ChiTaRS3.1			BQ688122	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000560079	ENST00000490081		ChiTaRS3.1			BQ688122	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-5UTR	ENST00000299927	ENST00000373548		ChiTaRS3.1			BQ688122	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000373541		ChiTaRS3.1			BQ688122	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
5CDS-intron	ENST00000299927	ENST00000490081		ChiTaRS3.1			BQ688122	ZNF592	chr15	85327601	+	HDAC1	chr1	32757744	+
3UTR-3UTR	ENST00000352456	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
3UTR-intron	ENST00000352456	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000595018	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000595018	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000392006	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000392006	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000378215	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000378215	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000602130	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000602130	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000593587	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000593587	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000263367	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000263367	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000594207	ENST00000369135		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-intron	ENST00000594207	ENST00000479905		ChiTaRS3.1			BU632270	HNRNPUL1	chr19	41813370	-	OTUD7B	chr1	149915352	+
intron-3UTR	ENST00000375688	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000375688	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000375688	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000375686	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000375686	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000375686	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000467576	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000467576	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000467576	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000447450	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000447450	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000447450	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000452329	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000452329	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000452329	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000551851	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000551851	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000551851	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000480986	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000480986	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000480986	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000547336	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000547336	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000547336	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000452630	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000452630	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000452630	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550450	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550450	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000550450	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000466571	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000466571	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000466571	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550291	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550291	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000550291	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000438415	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000438415	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000438415	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000546928	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000546928	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000546928	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000495138	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000495138	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000495138	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000551633	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000551633	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000551633	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000438725	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000438725	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000438725	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000547402	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000547402	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000547402	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000484598	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000484598	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000484598	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550140	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550140	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000550140	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000430726	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000430726	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000430726	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550381	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000550381	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000550381	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
5CDS-3UTR	ENST00000488460	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
5CDS-3UTR	ENST00000488460	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
5CDS-intron	ENST00000488460	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000552452	ENST00000202556		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-3UTR	ENST00000552452	ENST00000423488		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000552452	ENST00000555391		ChiTaRS3.1			AK098390	VWA7	chr6	3064879	-	PPP1R13B	chr14	104200319	-
intron-intron	ENST00000322349	ENST00000559332		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000322349	ENST00000558311		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000322349	ENST00000267973		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000322349	ENST00000558459		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000559332		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000558311		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000267973		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
intron-intron	ENST00000547833	ENST00000558459		ChiTaRS3.1			BQ325124	EEA1	chr12	93171845	-	WDR61	chr15	78582886	-
Frame-shit	ENST00000330387	ENST00000254108		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000330387	ENST00000380244		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000330387	ENST00000568685		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000330387	ENST00000474990		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000456390	ENST00000254108		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000456390	ENST00000380244		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000456390	ENST00000568685		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000456390	ENST00000474990		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000452463	ENST00000254108		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000452463	ENST00000380244		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
Frame-shit	ENST00000452463	ENST00000568685		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5CDS-3UTR	ENST00000452463	ENST00000474990		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3CDS	ENST00000458726	ENST00000254108		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3CDS	ENST00000458726	ENST00000380244		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3CDS	ENST00000458726	ENST00000568685		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
intron-3UTR	ENST00000458726	ENST00000474990		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3CDS	ENST00000468127	ENST00000254108		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3CDS	ENST00000468127	ENST00000380244		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3CDS	ENST00000468127	ENST00000568685		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
5UTR-3UTR	ENST00000468127	ENST00000474990		ChiTaRS3.1			AJ549096	CREB3L2	chr7	137686349	-	FUS	chr16	31199645	+
3UTR-3UTR	ENST00000272233	ENST00000453744		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000394801		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000394803		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000394804		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000343106		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000321805		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000350435		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000338145		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-3UTR	ENST00000272233	ENST00000349311		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-intron	ENST00000272233	ENST00000504211		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-intron	ENST00000272233	ENST00000357194		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-intron	ENST00000272233	ENST00000505207		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-intron	ENST00000272233	ENST00000507845		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-intron	ENST00000272233	ENST00000502404		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
3UTR-intron	ENST00000272233	ENST00000513098		ChiTaRS3.1			AI126264	RHOB	chr2	20649036	-	UBE2D3	chr4	103718434	+
intron-3CDS	ENST00000539054	ENST00000356151		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000302779		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000383716		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000463280		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000383715		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000484288		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000479241		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000539054	ENST00000536660		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000356151		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000302779		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000383716		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000463280		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000383715		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000484288		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000479241		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000379757	ENST00000536660		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000356151		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000302779		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000383716		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000463280		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000383715		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000484288		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000479241		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000473453	ENST00000536660		ChiTaRS3.1			AW290957	TXNDC5	chr6	7894980	+	PXK	chr3	58382850	-
intron-3CDS	ENST00000527706	ENST00000375217		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000527706	ENST00000375226		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000527706	ENST00000375267		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000527706	ENST00000375254		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000527706	ENST00000375225		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000527706	ENST00000429347		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000527706	ENST00000375224		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000527706	ENST00000543981		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000527706	ENST00000467272		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000527706	ENST00000375218		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000321322	ENST00000375217		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000321322	ENST00000375226		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000321322	ENST00000375267		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000321322	ENST00000375254		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000321322	ENST00000375225		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000321322	ENST00000429347		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000321322	ENST00000375224		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000321322	ENST00000543981		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000321322	ENST00000467272		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-intron	ENST00000321322	ENST00000375218		ChiTaRS3.1			AW965639	DSCAML1	chr11	117550551	-	UBR4	chr1	19411120	-
intron-3CDS	ENST00000429781	ENST00000321524		ChiTaRS3.1			BE927719	LINC00476	chr9	98603412	-	RAD51AP1	chr12	4653004	+
intron-5UTR	ENST00000429781	ENST00000543041		ChiTaRS3.1			BE927719	LINC00476	chr9	98603412	-	RAD51AP1	chr12	4653004	+
intron-5UTR	ENST00000429781	ENST00000228843		ChiTaRS3.1			BE927719	LINC00476	chr9	98603412	-	RAD51AP1	chr12	4653004	+
intron-5UTR	ENST00000429781	ENST00000352618		ChiTaRS3.1			BE927719	LINC00476	chr9	98603412	-	RAD51AP1	chr12	4653004	+
intron-5UTR	ENST00000429781	ENST00000544927		ChiTaRS3.1			BE927719	LINC00476	chr9	98603412	-	RAD51AP1	chr12	4653004	+
intron-intron	ENST00000429781	ENST00000544931		ChiTaRS3.1			BE927719	LINC00476	chr9	98603412	-	RAD51AP1	chr12	4653004	+
5CDS-intron	ENST00000488633	ENST00000389327		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
5CDS-intron	ENST00000488633	ENST00000389328		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
5CDS-intron	ENST00000488633	ENST00000438773		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
5CDS-intron	ENST00000488633	ENST00000522504		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
intron-intron	ENST00000469320	ENST00000389327		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
intron-intron	ENST00000469320	ENST00000389328		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
intron-intron	ENST00000469320	ENST00000438773		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
intron-intron	ENST00000469320	ENST00000522504		ChiTaRS3.1			BF742208	CIAO1	chr2	96936889	+	TRAPPC9	chr8	140877375	-
intron-intron	ENST00000400794	ENST00000375205		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000400794	ENST00000411667		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000400794	ENST00000375202		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000400794	ENST00000357054		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000400794	ENST00000395220		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000400794	ENST00000529487		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000400794	ENST00000460482		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000361054	ENST00000375205		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000361054	ENST00000411667		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000361054	ENST00000375202		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000361054	ENST00000357054		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000361054	ENST00000395220		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000361054	ENST00000529487		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000361054	ENST00000460482		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369962	ENST00000375205		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369962	ENST00000411667		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369962	ENST00000375202		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369962	ENST00000357054		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000369962	ENST00000395220		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000369962	ENST00000529487		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000369962	ENST00000460482		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369965	ENST00000375205		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369965	ENST00000411667		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369965	ENST00000375202		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000369965	ENST00000357054		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000369965	ENST00000395220		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000369965	ENST00000529487		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000369965	ENST00000460482		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000357672	ENST00000375205		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000357672	ENST00000411667		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000357672	ENST00000375202		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-intron	ENST00000357672	ENST00000357054		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000357672	ENST00000395220		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000357672	ENST00000529487		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
intron-3UTR	ENST00000357672	ENST00000460482		ChiTaRS3.1			AI923779	WDR47	chr1	109535388	-	CCDC180	chr9	100092682	-
In-frame	ENST00000392069	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392069	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000344493	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000344493	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000350526	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000350526	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000336840	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000336840	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000392070	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392070	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000409551	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000409551	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-3CDS	ENST00000464706	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-5UTR	ENST00000464706	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000409828	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000409828	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000258387	ENST00000379561		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000258387	ENST00000473775		ChiTaRS3.1			U02308	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-intron	ENST00000224167	ENST00000280886		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
5CDS-intron	ENST00000224167	ENST00000381496		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
5CDS-intron	ENST00000224167	ENST00000540204		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
5CDS-intron	ENST00000371625	ENST00000280886		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
5CDS-intron	ENST00000371625	ENST00000381496		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
5CDS-intron	ENST00000371625	ENST00000540204		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
intron-intron	ENST00000460340	ENST00000280886		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
intron-intron	ENST00000460340	ENST00000381496		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
intron-intron	ENST00000460340	ENST00000540204		ChiTaRS3.1			DA262936	PTGDS	chr9	139874447	+	DIP2C	chr10	709466	+
intron-3UTR	ENST00000394579	ENST00000308278		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-intron	ENST00000394579	ENST00000572018		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-3UTR	ENST00000394579	ENST00000301324		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-intron	ENST00000394579	ENST00000570892		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
3UTR-3UTR	ENST00000225174	ENST00000308278		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
3UTR-intron	ENST00000225174	ENST00000572018		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
3UTR-3UTR	ENST00000225174	ENST00000301324		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
3UTR-intron	ENST00000225174	ENST00000570892		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-3UTR	ENST00000492149	ENST00000308278		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-intron	ENST00000492149	ENST00000572018		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-3UTR	ENST00000492149	ENST00000301324		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
intron-intron	ENST00000492149	ENST00000570892		ChiTaRS3.1			AA977293	PPIF	chr10	81114922	-	FAM57A	chr17	645339	-
5CDS-intron	ENST00000544564	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000544564	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000541571	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000535424	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378799	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
3UTR-intron	ENST00000538565	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000606369	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000329908	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000538850	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000359263		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000358334		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371501		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371502		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371489		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000485212		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
5CDS-intron	ENST00000378798	ENST00000371488		ChiTaRS3.1			AW366609	IST1	chr16	71955338	+	MYOF	chr10	95144866	-
intron-5UTR	ENST00000263102	ENST00000382038		ChiTaRS3.1			BC022284	CCDC6	chr10	61566784	-	RAD1	chr5	34915821	+
intron-intron	ENST00000263102	ENST00000341754		ChiTaRS3.1			BC022284	CCDC6	chr10	61566784	-	RAD1	chr5	34915821	+
intron-3CDS	ENST00000394332	ENST00000351111		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-intron	ENST00000394332	ENST00000290208		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-5UTR	ENST00000394332	ENST00000414011		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-3CDS	ENST00000394333	ENST00000351111		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-intron	ENST00000394333	ENST00000290208		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-5UTR	ENST00000394333	ENST00000414011		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-3CDS	ENST00000479035	ENST00000351111		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-intron	ENST00000479035	ENST00000290208		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-5UTR	ENST00000479035	ENST00000414011		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-3CDS	ENST00000245857	ENST00000351111		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-intron	ENST00000245857	ENST00000290208		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-5UTR	ENST00000245857	ENST00000414011		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-3CDS	ENST00000577407	ENST00000351111		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-intron	ENST00000577407	ENST00000290208		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
intron-5UTR	ENST00000577407	ENST00000414011		ChiTaRS3.1			BE265135	RPL23	chr17	37006343	-	MRPL10	chr17	45908870	-
3UTR-3UTR	ENST00000370803	ENST00000373943		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
3UTR-intron	ENST00000370803	ENST00000468761		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
3UTR-3UTR	ENST00000332070	ENST00000373943		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
3UTR-intron	ENST00000332070	ENST00000468761		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
3UTR-3UTR	ENST00000394292	ENST00000373943		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
3UTR-intron	ENST00000394292	ENST00000468761		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-3UTR	ENST00000370799	ENST00000373943		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-intron	ENST00000370799	ENST00000468761		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-3UTR	ENST00000416404	ENST00000373943		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-intron	ENST00000416404	ENST00000468761		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-3UTR	ENST00000370800	ENST00000373943		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-intron	ENST00000370800	ENST00000468761		ChiTaRS3.1			AK025497	PHF6	chrX	133562282	+	STX12	chr1	28149488	+
intron-3CDS	ENST00000478654	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000478654	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000478654	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000478654	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000478654	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000478654	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000478654	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000460911	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000460911	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000460911	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000460911	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000460911	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000460911	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000460911	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000350995	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000350995	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000350995	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000350995	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000350995	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000350995	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000350995	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000320356	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000320356	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000320356	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000320356	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000320356	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000320356	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000320356	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000541220	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000541220	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000541220	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000541220	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000541220	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000541220	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000541220	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000476773	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000476773	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000476773	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000476773	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000476773	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000476773	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000476773	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000483967	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000483967	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000483967	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000483967	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000483967	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000483967	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000483967	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000536783	ENST00000388768		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000536783	ENST00000602465		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-3CDS	ENST00000536783	ENST00000265865		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000536783	ENST00000399200		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000536783	ENST00000454950		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000536783	ENST00000472394		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000536783	ENST00000342616		ChiTaRS3.1			CA417159	EZH2	chr7	148504703	+	RUFY2	chr10	70136641	+
intron-intron	ENST00000405837	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000405837	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000405837	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000405837	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000433053	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000433053	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000433053	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000433053	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000278893	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000278893	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000278893	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000278893	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000360796	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000360796	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000360796	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000360796	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000403550	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000403550	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000403550	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000403550	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000407022	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000407022	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000407022	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000407022	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000421906	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000421906	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000421906	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000421906	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000537604	ENST00000445299		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3UTR	ENST00000537604	ENST00000323460		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000537604	ENST00000419026		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-intron	ENST00000537604	ENST00000489744		ChiTaRS3.1			BF055091	BSCL2	chr11	62457800	+	SENP5	chr3	196658460	-
intron-3CDS	ENST00000318607	ENST00000358901		ChiTaRS3.1			BE612624	PABPC1	chr8	101715249	+	VCP	chr9	35060402	-
intron-3CDS	ENST00000519004	ENST00000358901		ChiTaRS3.1			BE612624	PABPC1	chr8	101715249	+	VCP	chr9	35060402	-
intron-3CDS	ENST00000522387	ENST00000358901		ChiTaRS3.1			BE612624	PABPC1	chr8	101715249	+	VCP	chr9	35060402	-
intron-3CDS	ENST00000519596	ENST00000358901		ChiTaRS3.1			BE612624	PABPC1	chr8	101715249	+	VCP	chr9	35060402	-
5UTR-3CDS	ENST00000585509	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-3CDS	ENST00000585509	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-5UTR	ENST00000585509	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-5UTR	ENST00000585509	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-3CDS	ENST00000589297	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-3CDS	ENST00000589297	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-5UTR	ENST00000589297	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5UTR-5UTR	ENST00000589297	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000591455	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000591455	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000591455	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000591455	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000446868	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000446868	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000446868	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000446868	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000361101	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000361101	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000361101	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000361101	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000589296	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
Frame-shit	ENST00000589296	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000589296	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
5CDS-5UTR	ENST00000589296	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
intron-3CDS	ENST00000586175	ENST00000254942		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
intron-3CDS	ENST00000586175	ENST00000603068		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
intron-5UTR	ENST00000586175	ENST00000569611		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
intron-5UTR	ENST00000586175	ENST00000567296		ChiTaRS3.1			BI836301	CYTH1	chr17	76704278	-	TERF2	chr16	69406260	-
In-frame	ENST00000395135	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000395135	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000395135	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000395132	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000395132	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000395132	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000395132	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000395132	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000395132	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000268059	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000268059	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268059	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000354026	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000354026	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000354026	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000268058	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000268058	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000268058	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000565898	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000565898	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000565898	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000569477	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000569477	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569477	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
Frame-shit	ENST00000569965	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
Frame-shit	ENST00000569965	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000569965	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000567543	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000567543	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000567543	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000567543	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000567543	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000567543	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000435786	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000435786	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000435786	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
Frame-shit	ENST00000436891	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
Frame-shit	ENST00000436891	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000436891	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000564428	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000564428	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000564428	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000359928	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000359928	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000359928	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000359928	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000359928	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000359928	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000563500	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
In-frame	ENST00000563500	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
5CDS-intron	ENST00000563500	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000569161	ENST00000254066		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000569161	ENST00000394089		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000425707		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000394086		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000394081		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-intron	ENST00000569161	ENST00000420042		ChiTaRS3.1			S50916	PML	chr15	74325755	+	RARA	chr17	38504566	+
intron-3CDS	ENST00000338316	ENST00000373456		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000338316	ENST00000356990		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000338316	ENST00000235150		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000537121	ENST00000373456		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000537121	ENST00000356990		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000537121	ENST00000235150		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000513693	ENST00000373456		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000513693	ENST00000356990		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
intron-3CDS	ENST00000513693	ENST00000235150		ChiTaRS3.1			CA309448	ADCY2	chr1	152006276	+	RNF19B	chr1	33413832	+
5UTR-5UTR	ENST00000377604	ENST00000453514		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000377604	ENST00000423041		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000377604	ENST00000504233		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000377604	ENST00000428308		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-3UTR	ENST00000377604	ENST00000502269		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000377604	ENST00000296783		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000329236	ENST00000453514		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000329236	ENST00000423041		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000329236	ENST00000504233		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000329236	ENST00000428308		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-3UTR	ENST00000329236	ENST00000502269		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000329236	ENST00000296783		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000345781	ENST00000453514		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000345781	ENST00000423041		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000345781	ENST00000504233		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000345781	ENST00000428308		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-3UTR	ENST00000345781	ENST00000502269		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5UTR-5UTR	ENST00000345781	ENST00000296783		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
intron-5UTR	ENST00000478410	ENST00000453514		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
intron-5UTR	ENST00000478410	ENST00000423041		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
intron-5UTR	ENST00000478410	ENST00000504233		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
intron-5UTR	ENST00000478410	ENST00000428308		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
intron-3UTR	ENST00000478410	ENST00000502269		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
intron-5UTR	ENST00000478410	ENST00000296783		ChiTaRS3.1			BI909496	RBM10	chrX	47004776	+	PAPD4	chr5	78908441	+
5CDS-intron	ENST00000444746	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000444746	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000444746	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000444746	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000453091	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000453091	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000453091	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000453091	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000428287	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000428287	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000428287	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000428287	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000243326	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000243326	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000243326	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000243326	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000430328	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000430328	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000430328	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-intron	ENST00000430328	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000433166	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000433166	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000433166	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000433166	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000457745	ENST00000326448		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000457745	ENST00000483465		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000457745	ENST00000496589		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
intron-intron	ENST00000457745	ENST00000477495		ChiTaRS3.1			BQ441248	RIF1	chr2	152322324	+	IFT80	chr3	160119856	+
5CDS-3UTR	ENST00000360614	ENST00000337198		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000360614	ENST00000347770		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000360614	ENST00000522311		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-3UTR	ENST00000585374	ENST00000337198		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000585374	ENST00000347770		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000585374	ENST00000522311		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-3UTR	ENST00000593119	ENST00000337198		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000593119	ENST00000347770		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000593119	ENST00000522311		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-3UTR	ENST00000540670	ENST00000337198		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000540670	ENST00000347770		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000540670	ENST00000522311		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-3UTR	ENST00000590729	ENST00000337198		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590729	ENST00000347770		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590729	ENST00000522311		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-3UTR	ENST00000590511	ENST00000337198		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590511	ENST00000347770		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
intron-intron	ENST00000590511	ENST00000522311		ChiTaRS3.1			X74215	LONP1	chr19	5691846	-	AZIN1	chr8	103839550	-
5CDS-intron	ENST00000377828	ENST00000376177		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000396172		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000417556		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000458640		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000462421		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000415382		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000453105		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000449074		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000552820		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000463430		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000438578		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000415689		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000456476		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000412106		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000547039		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000550435		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000453488		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000453138		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000552288		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000441425		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000456666		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000546633		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000483957		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000430703		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000416863		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000413678		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000414440		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000547489		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000551031		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000468089		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000400293		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000400296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000400295		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000383508		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000548340		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000548331		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000495391		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000446341		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000548614		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000448296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000412330		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000445218		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000546637		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000489325		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-3UTR	ENST00000377828	ENST00000450987		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-3UTR	ENST00000377828	ENST00000431360		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-3UTR	ENST00000377828	ENST00000430784		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-3UTR	ENST00000377828	ENST00000550217		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-5UTR	ENST00000377828	ENST00000470514		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-intron	ENST00000377828	ENST00000549374		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000376177		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000396172		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000417556		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000458640		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000462421		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000415382		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000453105		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000449074		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000552820		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000463430		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000438578		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000415689		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000456476		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000412106		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000547039		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000550435		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000453488		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000453138		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000552288		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000441425		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000456666		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000546633		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000483957		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000430703		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000416863		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000413678		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000414440		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000547489		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000551031		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000468089		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000400293		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000400296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000400295		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000383508		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000548340		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000548331		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000495391		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000446341		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000548614		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000448296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000412330		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000445218		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000546637		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000489325		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000461727	ENST00000450987		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000461727	ENST00000431360		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000461727	ENST00000430784		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000461727	ENST00000550217		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-5UTR	ENST00000461727	ENST00000470514		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000461727	ENST00000549374		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000376177		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000396172		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000417556		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000458640		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000462421		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000415382		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000453105		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000449074		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000552820		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000463430		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000438578		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000415689		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000456476		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000412106		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000547039		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000550435		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000453488		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000453138		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000552288		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000441425		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000456666		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000546633		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000483957		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000430703		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000416863		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000413678		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000414440		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000547489		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000551031		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000468089		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000400293		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000400296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000400295		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000383508		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000548340		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000548331		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000495391		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000446341		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000548614		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000448296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000412330		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000445218		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000546637		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000489325		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000475228	ENST00000450987		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000475228	ENST00000431360		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000475228	ENST00000430784		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000475228	ENST00000550217		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-5UTR	ENST00000475228	ENST00000470514		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000475228	ENST00000549374		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000376177		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000396172		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000417556		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000458640		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000462421		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000415382		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000453105		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000449074		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000552820		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000463430		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000438578		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000415689		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000456476		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000412106		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000547039		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000550435		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000453488		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000453138		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000552288		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000441425		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000456666		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000546633		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000483957		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000430703		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000416863		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000413678		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000414440		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000547489		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000551031		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000468089		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000400293		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000400296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000400295		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000383508		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000548340		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000548331		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000495391		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000446341		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000548614		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000448296		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000412330		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000445218		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000546637		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000489325		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000416731	ENST00000450987		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000416731	ENST00000431360		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000416731	ENST00000430784		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-3UTR	ENST00000416731	ENST00000550217		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-5UTR	ENST00000416731	ENST00000470514		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
intron-intron	ENST00000416731	ENST00000549374		ChiTaRS3.1			AL834172	ESPN	chr1	6505826	+	DDX39B	chr6	2828921	-
5CDS-3UTR	ENST00000306726	ENST00000368865		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000538238		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368859		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368858		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000481952		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000564970	ENST00000368865		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000538238		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368859		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368858		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000481952		ChiTaRS3.1			BG204496	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000380191	ENST00000479212		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000380191	ENST00000358160		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-5UTR	ENST00000380191	ENST00000452134		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000380191	ENST00000472026		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000380191	ENST00000440446		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000479928	ENST00000479212		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000479928	ENST00000358160		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-5UTR	ENST00000479928	ENST00000452134		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000479928	ENST00000472026		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000479928	ENST00000440446		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000380132	ENST00000479212		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000380132	ENST00000358160		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-5UTR	ENST00000380132	ENST00000452134		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000380132	ENST00000472026		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000380132	ENST00000440446		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000380181	ENST00000479212		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3UTR	ENST00000380181	ENST00000358160		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-5UTR	ENST00000380181	ENST00000452134		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000380181	ENST00000472026		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-intron	ENST00000380181	ENST00000440446		ChiTaRS3.1			AW390850	GDI2	chr10	5808046	-	GRAMD1C	chr3	113601608	+
intron-3CDS	ENST00000401702	ENST00000369904		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000401702	ENST00000409267		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000401702	ENST00000369907		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000401702	ENST00000438534		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000401702	ENST00000369909		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000401702	ENST00000409138		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000401702	ENST00000369903		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000369904		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000409267		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000369907		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000438534		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000369909		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000409138		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397326	ENST00000369903		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000369904		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000409267		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000369907		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000438534		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000369909		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000409138		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000397328	ENST00000369903		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000369904		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000409267		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000369907		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000438534		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000369909		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000409138		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000359787	ENST00000369903		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000369904		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000409267		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000369907		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000438534		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000369909		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000409138		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000406324	ENST00000369903		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000369904		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000409267		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000369907		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000438534		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000369909		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000409138		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
intron-3CDS	ENST00000472240	ENST00000369903		ChiTaRS3.1			DA897653	MB	chr22	36006960	-	PSRC1	chr1	109823517	-
5CDS-intron	ENST00000379542	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000379542	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000379542	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379542	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-3UTR	ENST00000491103	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-3UTR	ENST00000491103	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-intron	ENST00000491103	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000461342	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000461342	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000461342	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000475942	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000475942	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000475942	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000379530	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000379530	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000379530	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000473276	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000473276	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000473276	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000481240	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000481240	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000481240	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000437600		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000292538		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000393824		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000547394		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000467317	ENST00000360264		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000425244		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-3UTR	ENST00000467317	ENST00000292535		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000549414		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000556210		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000550008		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000546411		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
5CDS-intron	ENST00000467317	ENST00000560541		ChiTaRS3.1			AV750827	TMEM14B	chr6	10749478	+	CUX1	chr7	101900466	+
intron-3CDS	ENST00000306353	ENST00000391984		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000306353	ENST00000391982		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000306353	ENST00000404753		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000306353	ENST00000270364		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000306353	ENST00000352879		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000306353	ENST00000354082		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-3CDS	ENST00000334462	ENST00000391984		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000334462	ENST00000391982		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000334462	ENST00000404753		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000334462	ENST00000270364		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000334462	ENST00000352879		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000334462	ENST00000354082		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-3CDS	ENST00000409668	ENST00000391984		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000409668	ENST00000391982		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000409668	ENST00000404753		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000409668	ENST00000270364		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000409668	ENST00000352879		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-intron	ENST00000409668	ENST00000354082		ChiTaRS3.1			AW593365	TMEM150A	chr2	85825929	+	CAPN10	chr2	241537418	-
intron-5UTR	ENST00000530157	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000530157	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000530157	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000530157	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000530157	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000525451	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000525451	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000525451	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000525451	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000525451	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000308162	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000308162	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000308162	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000308162	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000308162	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000527344	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000527344	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000527344	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000527344	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000527344	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000531407	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000531407	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000531407	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000531407	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000531407	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000524553	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000524553	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000524553	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000524553	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000524553	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000534769	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000534769	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000534769	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000534769	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000534769	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000531413	ENST00000263360		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-5UTR	ENST00000531413	ENST00000528180		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000531413	ENST00000327320		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000531413	ENST00000351625		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
intron-intron	ENST00000531413	ENST00000527888		ChiTaRS3.1			CN291706	CFL1	chr11	65623434	-	EED	chr11	85955817	+
5CDS-5UTR	ENST00000348943	ENST00000473039		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000348943	ENST00000373624		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000348943	ENST00000542603		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000348943	ENST00000394219		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-intron	ENST00000348943	ENST00000373620		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-intron	ENST00000348943	ENST00000394215		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-intron	ENST00000348943	ENST00000373618		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000325495	ENST00000473039		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000325495	ENST00000373624		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000325495	ENST00000542603		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-5UTR	ENST00000325495	ENST00000394219		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-intron	ENST00000325495	ENST00000373620		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-intron	ENST00000325495	ENST00000394215		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-intron	ENST00000325495	ENST00000373618		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-5UTR	ENST00000602219	ENST00000473039		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-5UTR	ENST00000602219	ENST00000373624		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-5UTR	ENST00000602219	ENST00000542603		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-5UTR	ENST00000602219	ENST00000394219		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-intron	ENST00000602219	ENST00000373620		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-intron	ENST00000602219	ENST00000394215		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
intron-intron	ENST00000602219	ENST00000373618		ChiTaRS3.1			AK310661	HNRNPM	chr19	8539105	+	DENND1A	chr9	126144480	-
5CDS-3UTR	ENST00000368738	ENST00000458244		ChiTaRS3.1			DA761972	S100A9	chr1	153333215	+	KRT4	chr12	53200693	-
5CDS-3UTR	ENST00000368738	ENST00000293774		ChiTaRS3.1			DA761972	S100A9	chr1	153333215	+	KRT4	chr12	53200693	-
5CDS-3UTR	ENST00000368738	ENST00000551956		ChiTaRS3.1			DA761972	S100A9	chr1	153333215	+	KRT4	chr12	53200693	-
intron-3CDS	ENST00000540511	ENST00000264818		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000540511	ENST00000524462		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000540511	ENST00000525621		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000540511	ENST00000529370		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-intron	ENST00000540511	ENST00000529422		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000322765	ENST00000264818		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000322765	ENST00000524462		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000322765	ENST00000525621		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-3CDS	ENST00000322765	ENST00000529370		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-intron	ENST00000322765	ENST00000529422		ChiTaRS3.1			BU633172	PLCD3	chr17	43189190	+	TYK2	chr19	10475565	+
intron-intron	ENST00000373233	ENST00000524717		ChiTaRS3.1			BF371156	CHD6	chr20	40102015	-	MAML2	chr11	95925505	-
intron-intron	ENST00000309279	ENST00000524717		ChiTaRS3.1			BF371156	CHD6	chr20	40102015	-	MAML2	chr11	95925505	-
intron-intron	ENST00000373222	ENST00000524717		ChiTaRS3.1			BF371156	CHD6	chr20	40102015	-	MAML2	chr11	95925505	-
intron-intron	ENST00000480022	ENST00000524717		ChiTaRS3.1			BF371156	CHD6	chr20	40102015	-	MAML2	chr11	95925505	-
intron-intron	ENST00000263713	ENST00000361781		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000263713	ENST00000429490		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000263713	ENST00000492601		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000263713	ENST00000361543		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443902	ENST00000361781		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443902	ENST00000429490		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443902	ENST00000492601		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443902	ENST00000361543		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000331393	ENST00000361781		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000331393	ENST00000429490		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000331393	ENST00000492601		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000331393	ENST00000361543		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443124	ENST00000361781		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443124	ENST00000429490		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443124	ENST00000492601		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000443124	ENST00000361543		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000452780	ENST00000361781		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000452780	ENST00000429490		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000452780	ENST00000492601		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000452780	ENST00000361543		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000488691	ENST00000361781		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000488691	ENST00000429490		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000488691	ENST00000492601		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
intron-intron	ENST00000488691	ENST00000361543		ChiTaRS3.1			BF836346	EPB41L5	chr2	120885494	+	SGMS1	chr10	52195779	-
5UTR-3UTR	ENST00000233114	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000233114	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000233114	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-intron	ENST00000233114	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000233114	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409908	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409908	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409908	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-intron	ENST00000409908	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409908	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409476	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409476	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409476	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-intron	ENST00000409476	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3UTR	ENST00000409476	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000539945	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000539945	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000539945	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-intron	ENST00000539945	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000539945	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000544381	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000544381	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000544381	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-intron	ENST00000544381	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000544381	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000394423	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000394423	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000394423	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-intron	ENST00000394423	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
intron-3UTR	ENST00000394423	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
3UTR-3UTR	ENST00000462944	ENST00000355078		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
3UTR-3UTR	ENST00000462944	ENST00000302763		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
3UTR-3UTR	ENST00000462944	ENST00000518825		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
3UTR-intron	ENST00000462944	ENST00000520400		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
3UTR-3UTR	ENST00000462944	ENST00000540387		ChiTaRS3.1			CK003575	MDH1	chr2	63816146	+	CTNNA1	chr5	138269887	+
5UTR-3CDS	ENST00000524394	ENST00000310325		ChiTaRS3.1			DA075766	ZNF251	chr8	145980789	-	CTSF	chr11	66335556	-
5UTR-intron	ENST00000524394	ENST00000533168		ChiTaRS3.1			DA075766	ZNF251	chr8	145980789	-	CTSF	chr11	66335556	-
5UTR-3CDS	ENST00000292562	ENST00000310325		ChiTaRS3.1			DA075766	ZNF251	chr8	145980789	-	CTSF	chr11	66335556	-
5UTR-intron	ENST00000292562	ENST00000533168		ChiTaRS3.1			DA075766	ZNF251	chr8	145980789	-	CTSF	chr11	66335556	-
intron-intron	ENST00000399763	ENST00000372725		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399763	ENST00000372724		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399763	ENST00000287239		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399763	ENST00000372714		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399763	ENST00000372711		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-3UTR	ENST00000399763	ENST00000490365		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399766	ENST00000372725		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399766	ENST00000372724		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399766	ENST00000287239		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399766	ENST00000372714		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000399766	ENST00000372711		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-3UTR	ENST00000399766	ENST00000490365		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000374343	ENST00000372725		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000374343	ENST00000372724		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000374343	ENST00000287239		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000374343	ENST00000372714		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000374343	ENST00000372711		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-3UTR	ENST00000374343	ENST00000490365		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000470035	ENST00000372725		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000470035	ENST00000372724		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000470035	ENST00000287239		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000470035	ENST00000372714		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-intron	ENST00000470035	ENST00000372711		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-3UTR	ENST00000470035	ENST00000490365		ChiTaRS3.1			AJ299264	TMEM57	chr1	25793487	+	KAT6B	chr10	76785513	+
intron-3UTR	ENST00000410075	ENST00000357250		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-3UTR	ENST00000410075	ENST00000320755		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-3UTR	ENST00000410075	ENST00000370499		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-intron	ENST00000410075	ENST00000489611		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-intron	ENST00000410075	ENST00000370496		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-3UTR	ENST00000377802	ENST00000357250		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-3UTR	ENST00000377802	ENST00000320755		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-3UTR	ENST00000377802	ENST00000370499		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-intron	ENST00000377802	ENST00000489611		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-intron	ENST00000377802	ENST00000370496		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000355812	ENST00000357250		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000355812	ENST00000320755		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000355812	ENST00000370499		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000355812	ENST00000489611		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000355812	ENST00000370496		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000409544	ENST00000357250		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000409544	ENST00000320755		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000409544	ENST00000370499		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000409544	ENST00000489611		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000409544	ENST00000370496		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000264447	ENST00000357250		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000264447	ENST00000320755		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000264447	ENST00000370499		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000264447	ENST00000489611		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000264447	ENST00000370496		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000409407	ENST00000357250		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000409407	ENST00000320755		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-3UTR	ENST00000409407	ENST00000370499		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000409407	ENST00000489611		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
3UTR-intron	ENST00000409407	ENST00000370496		ChiTaRS3.1			DV460377	ZNF638	chr2	71662040	-	COL9A1	chr6	70925993	+
intron-3CDS	ENST00000295065	ENST00000273857		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000295065	ENST00000508498		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000295065	ENST00000502252		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000295065	ENST00000505909		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000295065	ENST00000504584		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000295065	ENST00000515827		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-3CDS	ENST00000379383	ENST00000273857		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000379383	ENST00000508498		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000379383	ENST00000502252		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000379383	ENST00000505909		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000379383	ENST00000504584		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000379383	ENST00000515827		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-3CDS	ENST00000404530	ENST00000273857		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000404530	ENST00000508498		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000404530	ENST00000502252		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000404530	ENST00000505909		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000404530	ENST00000504584		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000404530	ENST00000515827		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-3CDS	ENST00000490459	ENST00000273857		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000490459	ENST00000508498		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000490459	ENST00000502252		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000490459	ENST00000505909		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000490459	ENST00000504584		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000490459	ENST00000515827		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-3CDS	ENST00000426310	ENST00000273857		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000426310	ENST00000508498		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000426310	ENST00000502252		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000426310	ENST00000505909		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000426310	ENST00000504584		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000426310	ENST00000515827		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-3CDS	ENST00000407893	ENST00000273857		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000407893	ENST00000508498		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000407893	ENST00000502252		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000407893	ENST00000505909		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000407893	ENST00000504584		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-intron	ENST00000407893	ENST00000515827		ChiTaRS3.1			CN274312	MEMO1	chr2	32264346	-	CORIN	chr4	47809066	-
intron-5UTR	ENST00000246868	ENST00000479871		ChiTaRS3.1			BF772219	SBDS	chr7	66458345	-	POLE3	chr9	116171172	-
intron-5UTR	ENST00000246868	ENST00000374169		ChiTaRS3.1			BF772219	SBDS	chr7	66458345	-	POLE3	chr9	116171172	-
intron-5UTR	ENST00000246868	ENST00000374171		ChiTaRS3.1			BF772219	SBDS	chr7	66458345	-	POLE3	chr9	116171172	-
intron-3CDS	ENST00000342350	ENST00000377560		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000342350	ENST00000430131		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000342350	ENST00000550722		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000342350	ENST00000549141		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588499	ENST00000377560		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588499	ENST00000430131		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588499	ENST00000550722		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000588499	ENST00000549141		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588295	ENST00000377560		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588295	ENST00000430131		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000588295	ENST00000550722		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000588295	ENST00000549141		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000310604	ENST00000377560		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000310604	ENST00000430131		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000310604	ENST00000550722		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000310604	ENST00000549141		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000452796	ENST00000377560		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000452796	ENST00000430131		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-3CDS	ENST00000452796	ENST00000550722		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
intron-intron	ENST00000452796	ENST00000549141		ChiTaRS3.1			BQ368664	DCAKD	chr17	43101520	-	HECTD4	chr12	112608230	-
3UTR-3CDS	ENST00000491306	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
3UTR-3CDS	ENST00000491306	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
3UTR-3CDS	ENST00000491306	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
3UTR-3CDS	ENST00000491306	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
3UTR-intron	ENST00000491306	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000600880	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000600880	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000600880	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000600880	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-intron	ENST00000600880	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000446558	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000446558	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000446558	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000446558	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-intron	ENST00000446558	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
In-frame	ENST00000456586	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
In-frame	ENST00000456586	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
In-frame	ENST00000456586	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
In-frame	ENST00000456586	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
5CDS-intron	ENST00000456586	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000598925	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000598925	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000598925	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000598925	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-intron	ENST00000598925	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000427280	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000427280	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000427280	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000427280	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-intron	ENST00000427280	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000441179	ENST00000380512		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000441179	ENST00000293831		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000441179	ENST00000577269		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-3CDS	ENST00000441179	ENST00000582746		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
intron-intron	ENST00000441179	ENST00000581808		ChiTaRS3.1			CD049225	RPL37A	chr2	217366184	+	EIF4A1	chr17	7477605	+
Frame-shit	ENST00000579419	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000579419	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000579419	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000579419	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000579419	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000579419	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
Frame-shit	ENST00000357896	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000357896	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000357896	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000357896	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000357896	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000357896	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
Frame-shit	ENST00000395418	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000395418	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000395418	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000395418	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000395418	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000395418	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
In-frame	ENST00000585089	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585089	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585089	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585089	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585089	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585089	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
Frame-shit	ENST00000585313	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585313	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585313	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585313	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585313	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000585313	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
In-frame	ENST00000578122	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578122	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578122	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578122	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578122	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578122	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
In-frame	ENST00000578985	ENST00000320717		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578985	ENST00000338435		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578985	ENST00000409626		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578985	ENST00000409428		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578985	ENST00000409215		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-intron	ENST00000578985	ENST00000471443		ChiTaRS3.1			DC316034	IFT20	chr17	26658882	-	GLS	chr2	191827556	+
5CDS-3UTR	ENST00000372508	ENST00000418919		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372508	ENST00000258145		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372508	ENST00000543646		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372508	ENST00000542058		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372507	ENST00000418919		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372507	ENST00000258145		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372507	ENST00000543646		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372507	ENST00000542058		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372506	ENST00000418919		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372506	ENST00000258145		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372506	ENST00000543646		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372506	ENST00000542058		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000397044	ENST00000418919		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000397044	ENST00000258145		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000397044	ENST00000543646		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000397044	ENST00000542058		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372504	ENST00000418919		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372504	ENST00000258145		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372504	ENST00000543646		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372504	ENST00000542058		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372502	ENST00000418919		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-3UTR	ENST00000372502	ENST00000258145		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372502	ENST00000543646		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
5CDS-intron	ENST00000372502	ENST00000542058		ChiTaRS3.1			DB469756	ZNF691	chr1	43316740	+	GNS	chr12	65108920	-
intron-3CDS	ENST00000398238	ENST00000302536		ChiTaRS3.1			CN308902	NSF	chr17	333500	-	VAT1L	chr16	77859284	+
intron-intron	ENST00000398238	ENST00000563850		ChiTaRS3.1			CN308902	NSF	chr17	333500	-	VAT1L	chr16	77859284	+
intron-3CDS	ENST00000225282	ENST00000302536		ChiTaRS3.1			CN308902	NSF	chr17	333500	-	VAT1L	chr16	77859284	+
intron-intron	ENST00000225282	ENST00000563850		ChiTaRS3.1			CN308902	NSF	chr17	333500	-	VAT1L	chr16	77859284	+
intron-3CDS	ENST00000575068	ENST00000302536		ChiTaRS3.1			CN308902	NSF	chr17	333500	-	VAT1L	chr16	77859284	+
intron-intron	ENST00000575068	ENST00000563850		ChiTaRS3.1			CN308902	NSF	chr17	333500	-	VAT1L	chr16	77859284	+
intron-3CDS	ENST00000252818	ENST00000402363		ChiTaRS3.1			BC080632	JUND	chr19	18391459	-	NASP	chr1	46067972	+
intron-intron	ENST00000252818	ENST00000537798		ChiTaRS3.1			BC080632	JUND	chr19	18391459	-	NASP	chr1	46067972	+
intron-intron	ENST00000252818	ENST00000350030		ChiTaRS3.1			BC080632	JUND	chr19	18391459	-	NASP	chr1	46067972	+
intron-intron	ENST00000252818	ENST00000372052		ChiTaRS3.1			BC080632	JUND	chr19	18391459	-	NASP	chr1	46067972	+
intron-intron	ENST00000252818	ENST00000351223		ChiTaRS3.1			BC080632	JUND	chr19	18391459	-	NASP	chr1	46067972	+
intron-intron	ENST00000252818	ENST00000530073		ChiTaRS3.1			BC080632	JUND	chr19	18391459	-	NASP	chr1	46067972	+
intron-3CDS	ENST00000366956	ENST00000589824		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000366956	ENST00000592953		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000366956	ENST00000589093		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000366956	ENST00000360133		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000366956	ENST00000443188		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000543945	ENST00000589824		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000543945	ENST00000592953		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000543945	ENST00000589093		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000543945	ENST00000360133		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000543945	ENST00000443188		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000491277	ENST00000589824		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000491277	ENST00000592953		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000491277	ENST00000589093		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000491277	ENST00000360133		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3CDS	ENST00000491277	ENST00000443188		ChiTaRS3.1			BG685962	PTPN14	chr1	214650632	-	NLRP11	chr19	56300329	-
intron-3UTR	ENST00000204726	ENST00000233813		ChiTaRS3.1			BQ447459	GOLGA3	chr12	133346033	+	IGFBP5	chr2	217540047	+
intron-3UTR	ENST00000450791	ENST00000233813		ChiTaRS3.1			BQ447459	GOLGA3	chr12	133346033	+	IGFBP5	chr2	217540047	+
intron-3UTR	ENST00000456883	ENST00000233813		ChiTaRS3.1			BQ447459	GOLGA3	chr12	133346033	+	IGFBP5	chr2	217540047	+
intron-3UTR	ENST00000537452	ENST00000233813		ChiTaRS3.1			BQ447459	GOLGA3	chr12	133346033	+	IGFBP5	chr2	217540047	+
intron-3UTR	ENST00000545875	ENST00000233813		ChiTaRS3.1			BQ447459	GOLGA3	chr12	133346033	+	IGFBP5	chr2	217540047	+
intron-3UTR	ENST00000534967	ENST00000233813		ChiTaRS3.1			BQ447459	GOLGA3	chr12	133346033	+	IGFBP5	chr2	217540047	+
intron-intron	ENST00000296417	ENST00000560606		ChiTaRS3.1			CN273387	H2AFZ	chr4	100871147	-	RBPMS2	chr15	65067525	-
intron-5UTR	ENST00000296417	ENST00000300069		ChiTaRS3.1			CN273387	H2AFZ	chr4	100871147	-	RBPMS2	chr15	65067525	-
intron-intron	ENST00000529158	ENST00000560606		ChiTaRS3.1			CN273387	H2AFZ	chr4	100871147	-	RBPMS2	chr15	65067525	-
intron-5UTR	ENST00000529158	ENST00000300069		ChiTaRS3.1			CN273387	H2AFZ	chr4	100871147	-	RBPMS2	chr15	65067525	-
intron-3CDS	ENST00000352203	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000352203	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-3CDS	ENST00000601498	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000601498	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-3CDS	ENST00000599990	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000599990	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-3CDS	ENST00000593442	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000593442	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-3CDS	ENST00000263270	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000263270	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-3CDS	ENST00000597020	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000597020	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-3CDS	ENST00000601649	ENST00000309311		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000601649	ENST00000600720		ChiTaRS3.1			AA452576	AP2S1	chr19	47341564	+	EEF2	chr19	3981413	+
intron-intron	ENST00000367355	ENST00000367355		ChiTaRS3.1			AI954795	LINC00862	chr1	200332270	+	LINC00862	chr1	200331533	+
3UTR-3CDS	ENST00000515359	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000515359	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000515359	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000515359	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000515359	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000308775	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000308775	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000541308	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000541308	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000539901	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000539901	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000545947	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000545947	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000538711	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000538711	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000525071		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000429869		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000525815		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000479935	ENST00000265836		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000479935	ENST00000375682		ChiTaRS3.1			AI950189	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
5CDS-intron	ENST00000292123	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000292123	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000292123	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000592224	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000592224	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000592224	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-intron	ENST00000586934	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-intron	ENST00000586934	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
intron-intron	ENST00000586934	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000454510	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000454510	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000454510	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000433404	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000433404	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000433404	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000588852	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000588852	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000588852	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000538656	ENST00000464527		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000538656	ENST00000445927		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
5CDS-intron	ENST00000538656	ENST00000294947		ChiTaRS3.1			BF930423	SAFB	chr19	5653360	+	C2orf61	chr2	47389485	-
In-frame	ENST00000225964	ENST00000331163		ChiTaRS3.1			Y08643	COL1A1	chr17	48264844	-	PDGFB	chr22	39631879	-
In-frame	ENST00000225964	ENST00000381551		ChiTaRS3.1			Y08643	COL1A1	chr17	48264844	-	PDGFB	chr22	39631879	-
intron-intron	ENST00000524555	ENST00000268483		ChiTaRS3.1			BG564592	SAA2-SAA4	chr11	18267493	-	TXNL4B	chr16	72094767	+
intron-intron	ENST00000524555	ENST00000423037		ChiTaRS3.1			BG564592	SAA2-SAA4	chr11	18267493	-	TXNL4B	chr16	72094767	+
intron-intron	ENST00000524555	ENST00000426362		ChiTaRS3.1			BG564592	SAA2-SAA4	chr11	18267493	-	TXNL4B	chr16	72094767	+
intron-3UTR	ENST00000381346	ENST00000533902		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000381346	ENST00000280258		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000381346	ENST00000441050		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-3UTR	ENST00000381346	ENST00000531521		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-3UTR	ENST00000553384	ENST00000533902		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000553384	ENST00000280258		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000553384	ENST00000441050		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-3UTR	ENST00000553384	ENST00000531521		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-3UTR	ENST00000428130	ENST00000533902		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000428130	ENST00000280258		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000428130	ENST00000441050		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-3UTR	ENST00000428130	ENST00000531521		ChiTaRS3.1			BF432108	RDH11	chr14	68144529	+	PRSS23	chr11	86662375	+
intron-intron	ENST00000434640	ENST00000496253		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
intron-3UTR	ENST00000434640	ENST00000258436		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-intron	ENST00000380368	ENST00000496253		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-3UTR	ENST00000380368	ENST00000258436		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-intron	ENST00000380375	ENST00000496253		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-3UTR	ENST00000380375	ENST00000258436		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-intron	ENST00000380379	ENST00000496253		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-3UTR	ENST00000380379	ENST00000258436		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-intron	ENST00000464040	ENST00000496253		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-3UTR	ENST00000464040	ENST00000258436		ChiTaRS3.1			AW082286	BPHL	chr6	3152995	-	MFSD9	chr2	103334117	+
3UTR-3CDS	ENST00000534336	ENST00000226193		ChiTaRS3.1			BM723127	MALAT1	chr11	65268865	+	RCVRN	chr17	9808182	-
3UTR-intron	ENST00000534336	ENST00000570909		ChiTaRS3.1			BM723127	MALAT1	chr11	65268865	+	RCVRN	chr17	9808182	-
intron-3UTR	ENST00000446176	ENST00000340124		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000446176	ENST00000440783		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000420781	ENST00000340124		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000420781	ENST00000440783		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000355681	ENST00000340124		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000355681	ENST00000440783		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000443566	ENST00000340124		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000443566	ENST00000440783		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000478129	ENST00000340124		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-3UTR	ENST00000478129	ENST00000440783		ChiTaRS3.1			CR742425	FNBP1	chr9	132651026	-	GPT2	chr16	46965083	+
intron-intron	ENST00000340666	ENST00000251582		ChiTaRS3.1			DB258055	SYN1	chrX	47442862	+	ADAMTS2	chr5	178582079	-
intron-intron	ENST00000340666	ENST00000274609		ChiTaRS3.1			DB258055	SYN1	chrX	47442862	+	ADAMTS2	chr5	178582079	-
intron-intron	ENST00000295987	ENST00000251582		ChiTaRS3.1			DB258055	SYN1	chrX	47442862	+	ADAMTS2	chr5	178582079	-
intron-intron	ENST00000295987	ENST00000274609		ChiTaRS3.1			DB258055	SYN1	chrX	47442862	+	ADAMTS2	chr5	178582079	-
intron-3UTR	ENST00000531428	ENST00000263097		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000531428	ENST00000606983		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000531428	ENST00000348419		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-intron	ENST00000531428	ENST00000565096		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000531428	ENST00000562958		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000265970	ENST00000263097		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000265970	ENST00000606983		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000265970	ENST00000348419		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-intron	ENST00000265970	ENST00000565096		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000265970	ENST00000562958		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000540361	ENST00000263097		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000540361	ENST00000606983		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000540361	ENST00000348419		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-intron	ENST00000540361	ENST00000565096		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
intron-3UTR	ENST00000540361	ENST00000562958		ChiTaRS3.1			BM461728	PIK3C2A	chr11	17110033	-	CNN2	chr19	1038327	+
3UTR-3CDS	ENST00000305747	ENST00000369317		ChiTaRS3.1			AW601963	CERS6	chr2	169629012	-	TXNIP	chr1	145440113	+
3UTR-intron	ENST00000305747	ENST00000475171		ChiTaRS3.1			AW601963	CERS6	chr2	169629012	-	TXNIP	chr1	145440113	+
3UTR-3CDS	ENST00000392687	ENST00000369317		ChiTaRS3.1			AW601963	CERS6	chr2	169629012	-	TXNIP	chr1	145440113	+
3UTR-intron	ENST00000392687	ENST00000475171		ChiTaRS3.1			AW601963	CERS6	chr2	169629012	-	TXNIP	chr1	145440113	+
5UTR-3UTR	ENST00000369111	ENST00000322310		ChiTaRS3.1			AA094140	CA14	chr1	150230452	+	SSNA1	chr9	140084464	+
5UTR-3UTR	ENST00000369111	ENST00000459860		ChiTaRS3.1			AA094140	CA14	chr1	150230452	+	SSNA1	chr9	140084464	+
intron-3CDS	ENST00000291527	ENST00000474855		ChiTaRS3.1			BM786342	TFF1	chr21	43782554	-	RALB	chr2	121036327	+
intron-3CDS	ENST00000291527	ENST00000272519		ChiTaRS3.1			BM786342	TFF1	chr21	43782554	-	RALB	chr2	121036327	+
intron-3CDS	ENST00000291527	ENST00000420510		ChiTaRS3.1			BM786342	TFF1	chr21	43782554	-	RALB	chr2	121036327	+
intron-3CDS	ENST00000291527	ENST00000404963		ChiTaRS3.1			BM786342	TFF1	chr21	43782554	-	RALB	chr2	121036327	+
intron-intron	ENST00000291527	ENST00000470417		ChiTaRS3.1			BM786342	TFF1	chr21	43782554	-	RALB	chr2	121036327	+
intron-3UTR	ENST00000319592	ENST00000295598		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000319592	ENST00000537345		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000319592	ENST00000369496		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000319592	ENST00000491156		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000381793	ENST00000295598		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000381793	ENST00000537345		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000381793	ENST00000369496		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000381793	ENST00000491156		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000381795	ENST00000295598		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000381795	ENST00000537345		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000381795	ENST00000369496		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000381795	ENST00000491156		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000295971	ENST00000295598		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000295971	ENST00000537345		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000295971	ENST00000369496		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000295971	ENST00000491156		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000514014	ENST00000295598		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000514014	ENST00000537345		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000514014	ENST00000369496		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000514014	ENST00000491156		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000515809	ENST00000295598		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000515809	ENST00000537345		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-3UTR	ENST00000515809	ENST00000369496		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000515809	ENST00000491156		ChiTaRS3.1			AI986298	RBM47	chr4	40553636	+	ATP1A1	chr1	116947141	-
intron-intron	ENST00000311713	ENST00000405709		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000331762		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000452895		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000415362		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000447215		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000437687		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000489381		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000311713	ENST00000450877		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000405709		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000331762		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000452895		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000415362		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000447215		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000437687		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000489381		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000278856	ENST00000450877		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000405709		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000331762		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000452895		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000415362		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000447215		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000437687		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000489381		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000529106	ENST00000450877		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000405709		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000331762		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000452895		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000415362		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000447215		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000437687		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000489381		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525239	ENST00000450877		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000405709		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000331762		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000452895		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000415362		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000447215		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000437687		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000489381		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000525752	ENST00000450877		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000405709		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000331762		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000452895		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000415362		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000447215		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000437687		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000489381		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
intron-intron	ENST00000540620	ENST00000450877		ChiTaRS3.1			DA803440	WDR74	chr11	62609096	-	IMMP2L	chr7	110731176	+
3UTR-3UTR	ENST00000432648	ENST00000261263		ChiTaRS3.1			CD358850	AKIRIN1	chr1	39470659	+	RAB21	chr12	72179963	+
intron-3UTR	ENST00000446189	ENST00000261263		ChiTaRS3.1			CD358850	AKIRIN1	chr1	39470659	+	RAB21	chr12	72179963	+
intron-3UTR	ENST00000372984	ENST00000261263		ChiTaRS3.1			CD358850	AKIRIN1	chr1	39470659	+	RAB21	chr12	72179963	+
intron-3CDS	ENST00000369093	ENST00000394936		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000369093	ENST00000394934		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000463089	ENST00000394936		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000463089	ENST00000394934		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000369092	ENST00000394936		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000369092	ENST00000394934		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000436547	ENST00000394936		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
intron-3CDS	ENST00000436547	ENST00000394934		ChiTaRS3.1			CA308179	TIAL1	chr10	121335222	+	PSAP	chr10	73579553	+
5CDS-3UTR	ENST00000396556	ENST00000303562		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5CDS-intron	ENST00000396556	ENST00000554617		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5CDS-intron	ENST00000396556	ENST00000556324		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5CDS-intron	ENST00000396556	ENST00000535987		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5CDS-intron	ENST00000396556	ENST00000555242		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5CDS-3UTR	ENST00000396556	ENST00000555686		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5CDS-intron	ENST00000396556	ENST00000555347		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-3UTR	ENST00000438237	ENST00000303562		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-intron	ENST00000438237	ENST00000554617		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-intron	ENST00000438237	ENST00000556324		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-intron	ENST00000438237	ENST00000535987		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-intron	ENST00000438237	ENST00000555242		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-3UTR	ENST00000438237	ENST00000555686		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-intron	ENST00000438237	ENST00000555347		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-3UTR	ENST00000467647	ENST00000303562		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-intron	ENST00000467647	ENST00000554617		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-intron	ENST00000467647	ENST00000556324		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-intron	ENST00000467647	ENST00000535987		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-intron	ENST00000467647	ENST00000555242		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-3UTR	ENST00000467647	ENST00000555686		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
5UTR-intron	ENST00000467647	ENST00000555347		ChiTaRS3.1			AW939698	OSBPL10	chr3	31871532	-	FOS	chr14	75748373	+
intron-3CDS	ENST00000325509	ENST00000285379		ChiTaRS3.1			BI042447	MSC	chr8	72754213	-	CA2	chr8	86385949	+
intron-3CDS	ENST00000518440	ENST00000285379		ChiTaRS3.1			BI042447	MSC	chr8	72754213	-	CA2	chr8	86385949	+
intron-intron	ENST00000403829	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000403829	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298687	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000350792	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397858	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554104	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000555158	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000553503	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397853	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000360463	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000556147	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397856	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397855	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554143	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397851	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397847	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000298684	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000397844	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000375976		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000211379		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000439687		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000404765		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000375964		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000362049		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000470875		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000442479		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000449450		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000417144		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000551350		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000497694		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000422756		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000425649		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000434446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000552467		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000463220		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000413922		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000454478		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000412012		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000546462		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000460147		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000383446		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000361076		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000383448		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000552605		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000471376		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000415373		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000444402		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000415345		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000550393		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000461852		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000443182		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000451932		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000419847		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000552116		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-intron	ENST00000554277	ENST00000460429		ChiTaRS3.1			AI199706	NDRG2	chr14	21485141	+	BAG6	chr6	2943106	+
intron-3UTR	ENST00000419152	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000419152	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000419152	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000532400	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000532400	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000532400	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000532741	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000532741	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000532741	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000317198	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000317198	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000317198	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000526838	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000526838	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000526838	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000442189	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000442189	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000442189	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000528610	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000528610	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000528610	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000423316	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000423316	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000423316	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000395119	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000395119	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000395119	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000529272	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000529272	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000529272	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000531621	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000531621	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000531621	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000524624	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000524624	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000524624	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000531770	ENST00000572515		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-3UTR	ENST00000531770	ENST00000392079		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
intron-intron	ENST00000531770	ENST00000313582		ChiTaRS3.1			BI860302	EEF1D	chr8	144662237	-	NFKBIB	chr19	39398809	+
Frame-shit	ENST00000357701	ENST00000224167		ChiTaRS3.1			BC094690	MYBPC2	chr19	50945535	+	PTGDS	chr9	139872062	+
Frame-shit	ENST00000357701	ENST00000371625		ChiTaRS3.1			BC094690	MYBPC2	chr19	50945535	+	PTGDS	chr9	139872062	+
5CDS-intron	ENST00000357701	ENST00000460340		ChiTaRS3.1			BC094690	MYBPC2	chr19	50945535	+	PTGDS	chr9	139872062	+
Frame-shit	ENST00000330387	ENST00000440768		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
Frame-shit	ENST00000330387	ENST00000359197		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000343574		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000331340		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000349824		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000357364		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000346667		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000438033		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000439701		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000413698		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000330387	ENST00000492782		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
Frame-shit	ENST00000456390	ENST00000440768		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
Frame-shit	ENST00000456390	ENST00000359197		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000343574		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000331340		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000349824		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000357364		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000346667		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000438033		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000439701		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000413698		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000456390	ENST00000492782		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
Frame-shit	ENST00000452463	ENST00000440768		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
Frame-shit	ENST00000452463	ENST00000359197		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000343574		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000331340		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000349824		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000357364		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000346667		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000438033		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000439701		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000413698		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5CDS-intron	ENST00000452463	ENST00000492782		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-3CDS	ENST00000458726	ENST00000440768		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-3CDS	ENST00000458726	ENST00000359197		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000343574		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000331340		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000349824		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000357364		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000346667		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000438033		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000439701		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000413698		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-intron	ENST00000458726	ENST00000492782		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-3CDS	ENST00000468127	ENST00000440768		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-3CDS	ENST00000468127	ENST00000359197		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000343574		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000331340		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000349824		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000357364		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000346667		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000438033		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000439701		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000413698		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
5UTR-intron	ENST00000468127	ENST00000492782		ChiTaRS3.1			DB194731	CREB3L2	chr7	137686350	-	IKZF1	chr7	50444230	+
intron-3CDS	ENST00000364938	ENST00000263382		ChiTaRS3.1			BQ224348	SNHG3	chr1	28834672	+	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000364938	ENST00000592798		ChiTaRS3.1			BQ224348	SNHG3	chr1	28834672	+	ASF1B	chr19	14237050	-
intron-3CDS	ENST00000364938	ENST00000474890		ChiTaRS3.1			BQ224348	SNHG3	chr1	28834672	+	ASF1B	chr19	14237050	-
intron-intron	ENST00000311713	ENST00000434600		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000311713	ENST00000538785		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000311713	ENST00000200639		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000311713	ENST00000371335		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000311713	ENST00000540603		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000278856	ENST00000434600		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000278856	ENST00000538785		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000278856	ENST00000200639		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000278856	ENST00000371335		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000278856	ENST00000540603		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000529106	ENST00000434600		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000529106	ENST00000538785		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000529106	ENST00000200639		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000529106	ENST00000371335		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000529106	ENST00000540603		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525239	ENST00000434600		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525239	ENST00000538785		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525239	ENST00000200639		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525239	ENST00000371335		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525239	ENST00000540603		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525752	ENST00000434600		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525752	ENST00000538785		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525752	ENST00000200639		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525752	ENST00000371335		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000525752	ENST00000540603		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000540620	ENST00000434600		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000540620	ENST00000538785		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000540620	ENST00000200639		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000540620	ENST00000371335		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
intron-intron	ENST00000540620	ENST00000540603		ChiTaRS3.1			DA305902	WDR74	chr11	62609182	-	LAMP2	chrX	119562586	-
3UTR-intron	ENST00000589037	ENST00000336861		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589037	ENST00000246635		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589037	ENST00000587544		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589037	ENST00000587118		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000253788	ENST00000336861		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000253788	ENST00000246635		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000253788	ENST00000587544		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000253788	ENST00000587118		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589913	ENST00000336861		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589913	ENST00000246635		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589913	ENST00000587544		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000589913	ENST00000587118		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000590864	ENST00000336861		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000590864	ENST00000246635		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000590864	ENST00000587544		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-intron	ENST00000590864	ENST00000587118		ChiTaRS3.1			DB013482	RPL27	chr17	41154938	+	KRT13	chr17	39661864	-
3UTR-3UTR	ENST00000229268	ENST00000374023		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
3UTR-3UTR	ENST00000229268	ENST00000374026		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
3UTR-intron	ENST00000229268	ENST00000374021		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
3UTR-3UTR	ENST00000389231	ENST00000374023		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
3UTR-3UTR	ENST00000389231	ENST00000374026		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
3UTR-intron	ENST00000389231	ENST00000374021		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
intron-3UTR	ENST00000541969	ENST00000374023		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
intron-3UTR	ENST00000541969	ENST00000374026		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
intron-intron	ENST00000541969	ENST00000374021		ChiTaRS3.1			AI087163	USP5	chr12	6975495	-	C6orf106	chr6	34555771	+
intron-3CDS	ENST00000369426	ENST00000366574		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000369426	ENST00000360064		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000369426	ENST00000542537		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000369426	ENST00000609119		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000235521	ENST00000366574		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000235521	ENST00000360064		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000235521	ENST00000542537		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000235521	ENST00000609119		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000537870	ENST00000366574		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000537870	ENST00000360064		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000537870	ENST00000542537		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000537870	ENST00000609119		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000497761	ENST00000366574		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000497761	ENST00000360064		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-3CDS	ENST00000497761	ENST00000542537		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
intron-intron	ENST00000497761	ENST00000609119		ChiTaRS3.1			DC320785	WARS2	chr1	119683416	+	RYR2	chr1	237850752	+
3UTR-intron	ENST00000251412	ENST00000390168		ChiTaRS3.1			BC052283	TUBG2	chr17	40818831	+	H19	chr11	2016468	-
intron-3CDS	ENST00000256682	ENST00000602404		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000256682	ENST00000498737		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-intron	ENST00000256682	ENST00000470753		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000447318	ENST00000602404		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000447318	ENST00000498737		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-intron	ENST00000447318	ENST00000470753		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000541959	ENST00000602404		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000541959	ENST00000498737		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-intron	ENST00000541959	ENST00000470753		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000541967	ENST00000602404		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-3CDS	ENST00000541967	ENST00000498737		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
intron-intron	ENST00000541967	ENST00000470753		ChiTaRS3.1			BQ668805	ARF3	chr12	49330793	-	NDUFA6	chr22	42486691	-
3UTR-5UTR	ENST00000262067	ENST00000379568		ChiTaRS3.1			AK225516	TSPAN13	chr7	16823295	+	PAK1IP1	chr6	10695190	+
intron-5UTR	ENST00000466195	ENST00000379568		ChiTaRS3.1			AK225516	TSPAN13	chr7	16823295	+	PAK1IP1	chr6	10695190	+
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM768064	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000535112	ENST00000371460		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000535112	ENST00000371459		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000535112	ENST00000371461		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000535112	ENST00000306867		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000535112	ENST00000371458		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000535112	ENST00000459689		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000396076	ENST00000371460		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000396076	ENST00000371459		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000396076	ENST00000371461		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000396076	ENST00000306867		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000396076	ENST00000371458		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000396076	ENST00000459689		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000350669	ENST00000371460		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000350669	ENST00000371459		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000350669	ENST00000371461		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000350669	ENST00000306867		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000350669	ENST00000371458		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-intron	ENST00000350669	ENST00000459689		ChiTaRS3.1			BF913407	LDHB	chr12	21799911	-	SUPT3H	chr6	44933785	+
intron-3CDS	ENST00000405486	ENST00000356392		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000405486	ENST00000591179		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000405486	ENST00000545100		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000405486	ENST00000586836		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000356244	ENST00000356392		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000356244	ENST00000591179		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000356244	ENST00000545100		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000356244	ENST00000586836		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000455915	ENST00000356392		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000455915	ENST00000591179		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000455915	ENST00000545100		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000455915	ENST00000586836		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000407260	ENST00000356392		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000407260	ENST00000591179		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000407260	ENST00000545100		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000407260	ENST00000586836		ChiTaRS3.1			BM800810	RANGAP1	chr22	41682078	-	CCDC151	chr19	11534690	-
intron-3CDS	ENST00000281142	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000281142	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000434680	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000434680	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000439369	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000439369	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000503215	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000503215	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000502495	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000502495	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000506368	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000506368	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000511426	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000511426	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000503401	ENST00000254322		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
intron-3CDS	ENST00000503401	ENST00000396969		ChiTaRS3.1			AW380464	SCLT1	chr4	129805431	-	DNAJB1	chr19	14627463	-
3UTR-5UTR	ENST00000378536	ENST00000422447		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-5UTR	ENST00000378536	ENST00000430553		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-5UTR	ENST00000378536	ENST00000396222		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000227157		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000540430		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000379412		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000542179		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000422447		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000430553		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000396222		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000227157		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000540430		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000379412		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000542179		ChiTaRS3.1			BC025288	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-3CDS	ENST00000506793	ENST00000322434		ChiTaRS3.1			AA227903	GUF1	chr4	44700627	-	ZNF354B	chr5	178309781	-
3UTR-intron	ENST00000506793	ENST00000522714		ChiTaRS3.1			AA227903	GUF1	chr4	44700627	-	ZNF354B	chr5	178309781	-
In-frame	ENST00000281543	ENST00000322434		ChiTaRS3.1			AA227903	GUF1	chr4	44700627	-	ZNF354B	chr5	178309781	-
5CDS-intron	ENST00000281543	ENST00000522714		ChiTaRS3.1			AA227903	GUF1	chr4	44700627	-	ZNF354B	chr5	178309781	-
intron-3CDS	ENST00000320316	ENST00000300738		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000320316	ENST00000423050		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000320316	ENST00000534285		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000320316	ENST00000537197		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3UTR	ENST00000320316	ENST00000528470		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000571362	ENST00000300738		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000571362	ENST00000423050		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000571362	ENST00000534285		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000571362	ENST00000537197		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3UTR	ENST00000571362	ENST00000528470		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000576955	ENST00000300738		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000576955	ENST00000423050		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000576955	ENST00000534285		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000576955	ENST00000537197		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3UTR	ENST00000576955	ENST00000528470		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000454255	ENST00000300738		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000454255	ENST00000423050		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000454255	ENST00000534285		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000454255	ENST00000537197		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3UTR	ENST00000454255	ENST00000528470		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000570753	ENST00000300738		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000570753	ENST00000423050		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000570753	ENST00000534285		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3CDS	ENST00000570753	ENST00000537197		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-3UTR	ENST00000570753	ENST00000528470		ChiTaRS3.1			AU125246	PHF23	chr17	7139380	-	RRM1	chr11	4144413	+
intron-intron	ENST00000193322	ENST00000293778		ChiTaRS3.1			DA283397	OSTM1	chr6	108364920	-	CXCL16	chr17	4639657	-
intron-5UTR	ENST00000193322	ENST00000576153		ChiTaRS3.1			DA283397	OSTM1	chr6	108364920	-	CXCL16	chr17	4639657	-
intron-intron	ENST00000193322	ENST00000574412		ChiTaRS3.1			DA283397	OSTM1	chr6	108364920	-	CXCL16	chr17	4639657	-
intron-intron	ENST00000492130	ENST00000293778		ChiTaRS3.1			DA283397	OSTM1	chr6	108364920	-	CXCL16	chr17	4639657	-
intron-5UTR	ENST00000492130	ENST00000576153		ChiTaRS3.1			DA283397	OSTM1	chr6	108364920	-	CXCL16	chr17	4639657	-
intron-intron	ENST00000492130	ENST00000574412		ChiTaRS3.1			DA283397	OSTM1	chr6	108364920	-	CXCL16	chr17	4639657	-
Frame-shit	ENST00000376573	ENST00000543470		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
Frame-shit	ENST00000376573	ENST00000366960		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
Frame-shit	ENST00000376573	ENST00000366959		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
5CDS-3UTR	ENST00000376573	ENST00000543354		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
5CDS-3UTR	ENST00000376573	ENST00000490299		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000545335	ENST00000543470		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000545335	ENST00000366960		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000545335	ENST00000366959		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000545335	ENST00000543354		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000545335	ENST00000490299		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000323883	ENST00000543470		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000323883	ENST00000366960		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000323883	ENST00000366959		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000323883	ENST00000543354		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000323883	ENST00000490299		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000422321	ENST00000543470		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000422321	ENST00000366960		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000422321	ENST00000366959		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000422321	ENST00000543354		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3UTR	ENST00000422321	ENST00000490299		ChiTaRS3.1			BM925273	PIP4K2A	chr10	23003111	-	RPS6KC1	chr1	213415911	+
intron-3CDS	ENST00000311550	ENST00000381341		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000311550	ENST00000233084		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000541819	ENST00000381341		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000541819	ENST00000233084		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000299267	ENST00000381341		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000299267	ENST00000233084		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000400188	ENST00000381341		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000400188	ENST00000233084		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000545868	ENST00000381341		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000545868	ENST00000233084		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000557641	ENST00000381341		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
intron-3CDS	ENST00000557641	ENST00000233084		ChiTaRS3.1			BG329765	GABRB3	chr15	26790498	-	DDX1	chr2	15768763	+
Frame-shit	ENST00000306434	ENST00000331830		ChiTaRS3.1			BP362529	MAT2A	chr2	85770157	+	CNTN2	chr1	205036226	+
Frame-shit	ENST00000409017	ENST00000331830		ChiTaRS3.1			BP362529	MAT2A	chr2	85770157	+	CNTN2	chr1	205036226	+
intron-3CDS	ENST00000490878	ENST00000331830		ChiTaRS3.1			BP362529	MAT2A	chr2	85770157	+	CNTN2	chr1	205036226	+
intron-3CDS	ENST00000418539	ENST00000307630		ChiTaRS3.1			BQ292246	BCYRN1	chrX	70516739	+	YWHAG	chr7	75959117	-
intron-5UTR	ENST00000440491	ENST00000333651		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-intron	ENST00000440491	ENST00000585741		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-5UTR	ENST00000338347	ENST00000333651		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-intron	ENST00000338347	ENST00000585741		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-5UTR	ENST00000468645	ENST00000333651		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-intron	ENST00000468645	ENST00000585741		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-5UTR	ENST00000281815	ENST00000333651		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-intron	ENST00000281815	ENST00000585741		ChiTaRS3.1			AF370429	NBPF9	chr1	145039771	+	HMG20B	chr19	3572974	+
intron-3UTR	ENST00000369016	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369016	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369016	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369014	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369014	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369014	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369009	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369009	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000369009	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000339643	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000339643	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000339643	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000271690	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000271690	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000271690	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000356527	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000356527	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000356527	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000503345	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000503345	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000503345	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000503241	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000503241	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000503241	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000362052	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000362052	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000362052	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000361532	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000361532	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000361532	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000361631	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000361631	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000361631	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000513281	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000513281	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000513281	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000354702	ENST00000219169		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000354702	ENST00000569436		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-3UTR	ENST00000354702	ENST00000568396		ChiTaRS3.1			BF215130	ENSA	chr1	150598245	-	NUTF2	chr16	67905115	+
intron-5UTR	ENST00000256689	ENST00000304718		ChiTaRS3.1			BJ989733	SLC38A2	chr12	46754213	-	GGNBP2	chr17	34901480	+
intron-5UTR	ENST00000256689	ENST00000485685		ChiTaRS3.1			BJ989733	SLC38A2	chr12	46754213	-	GGNBP2	chr17	34901480	+
intron-5UTR	ENST00000551374	ENST00000304718		ChiTaRS3.1			BJ989733	SLC38A2	chr12	46754213	-	GGNBP2	chr17	34901480	+
intron-5UTR	ENST00000551374	ENST00000485685		ChiTaRS3.1			BJ989733	SLC38A2	chr12	46754213	-	GGNBP2	chr17	34901480	+
intron-5UTR	ENST00000547252	ENST00000304718		ChiTaRS3.1			BJ989733	SLC38A2	chr12	46754213	-	GGNBP2	chr17	34901480	+
intron-5UTR	ENST00000547252	ENST00000485685		ChiTaRS3.1			BJ989733	SLC38A2	chr12	46754213	-	GGNBP2	chr17	34901480	+
intron-intron	ENST00000221561	ENST00000604938		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000401010		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000339388		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000369323		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000605317		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000479926		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000604894		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000221561	ENST00000401009		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000604938		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000401010		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000339388		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000369323		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000605317		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000479926		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000604894		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000327141	ENST00000401009		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000604938		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000401010		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000339388		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000369323		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000605317		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000479926		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000604894		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000592330	ENST00000401009		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000604938		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000401010		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000339388		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000369323		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000605317		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000479926		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000604894		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
intron-intron	ENST00000586839	ENST00000401009		ChiTaRS3.1			T07296	AES	chr19	3055678	-	NBPF11	chr1	147919866	-
Frame-shit	ENST00000284154	ENST00000222339		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000284154	ENST00000600245		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000284154	ENST00000359044		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
Frame-shit	ENST00000573099	ENST00000222339		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000573099	ENST00000600245		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000573099	ENST00000359044		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
Frame-shit	ENST00000395635	ENST00000222339		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000395635	ENST00000600245		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
5CDS-5UTR	ENST00000395635	ENST00000359044		ChiTaRS3.1			AK296691	GRAP	chr17	18939271	-	ZNF574	chr19	42582739	+
intron-3CDS	ENST00000303735	ENST00000454300		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000303735	ENST00000263635		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000409149	ENST00000454300		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000409149	ENST00000263635		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000409058	ENST00000454300		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000409058	ENST00000263635		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000409662	ENST00000454300		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000409662	ENST00000263635		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000493887	ENST00000454300		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000493887	ENST00000263635		ChiTaRS3.1			BU619052	SLC38A11	chr2	165778609	-	TANC1	chr2	160087359	-
intron-3CDS	ENST00000455502	ENST00000205061		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000455502	ENST00000422840		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000455502	ENST00000447066		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000248572	ENST00000205061		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000248572	ENST00000422840		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000248572	ENST00000447066		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000429473	ENST00000205061		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000429473	ENST00000422840		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000429473	ENST00000447066		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000430875	ENST00000205061		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000430875	ENST00000422840		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000430875	ENST00000447066		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000428834	ENST00000205061		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000428834	ENST00000422840		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-3CDS	ENST00000428834	ENST00000447066		ChiTaRS3.1			BF986197	GNGT1	chr7	93516054	-	GLG1	chr16	74519729	-
intron-intron	ENST00000524631	ENST00000358746		ChiTaRS3.1			AI174360	RNPC3	chr1	104097654	-	TTC37	chr5	94860167	+
intron-intron	ENST00000524631	ENST00000515176		ChiTaRS3.1			AI174360	RNPC3	chr1	104097654	-	TTC37	chr5	94860167	+
3UTR-intron	ENST00000533099	ENST00000358746		ChiTaRS3.1			AI174360	RNPC3	chr1	104097654	-	TTC37	chr5	94860167	+
3UTR-intron	ENST00000533099	ENST00000515176		ChiTaRS3.1			AI174360	RNPC3	chr1	104097654	-	TTC37	chr5	94860167	+
intron-intron	ENST00000423855	ENST00000358746		ChiTaRS3.1			AI174360	RNPC3	chr1	104097654	-	TTC37	chr5	94860167	+
intron-intron	ENST00000423855	ENST00000515176		ChiTaRS3.1			AI174360	RNPC3	chr1	104097654	-	TTC37	chr5	94860167	+
intron-intron	ENST00000360004	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000360004	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000360004	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000399450	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000399450	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000399450	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000444645	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000444645	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000444645	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000460546	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000460546	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000460546	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000328980	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000328980	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000328980	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
5CDS-intron	ENST00000437784	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
5CDS-intron	ENST00000437784	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
5CDS-intron	ENST00000437784	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000419393	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000419393	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000419393	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000553034	ENST00000356401		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000553034	ENST00000449376		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-intron	ENST00000553034	ENST00000490095		ChiTaRS3.1			BM919617	HLA-DRB1	chr6	4009970	-	ARIH2	chr3	48982569	+
intron-3CDS	ENST00000371421	ENST00000355078		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-3CDS	ENST00000371421	ENST00000302763		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-3CDS	ENST00000371421	ENST00000518825		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-intron	ENST00000371421	ENST00000520400		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-intron	ENST00000371421	ENST00000540387		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-3CDS	ENST00000491911	ENST00000355078		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-3CDS	ENST00000491911	ENST00000302763		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-3CDS	ENST00000491911	ENST00000518825		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-intron	ENST00000491911	ENST00000520400		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
intron-intron	ENST00000491911	ENST00000540387		ChiTaRS3.1			AK308882	ARRDC1	chr9	140510172	-	CTNNA1	chr5	138147941	+
Frame-shit	ENST00000439461	ENST00000381340		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000439461	ENST00000545902		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000439461	ENST00000242737		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
Frame-shit	ENST00000599581	ENST00000381340		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000599581	ENST00000545902		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000599581	ENST00000242737		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
Frame-shit	ENST00000600821	ENST00000381340		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000600821	ENST00000545902		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000600821	ENST00000242737		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
Frame-shit	ENST00000593612	ENST00000381340		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000593612	ENST00000545902		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000593612	ENST00000242737		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
Frame-shit	ENST00000359102	ENST00000381340		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000359102	ENST00000545902		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
5CDS-intron	ENST00000359102	ENST00000242737		ChiTaRS3.1			BF327272	ZNF766	chr19	52785401	+	ITPR2	chr12	26709260	-
In-frame	ENST00000589037	ENST00000422698		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
In-frame	ENST00000589037	ENST00000441710		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000447913		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000433738		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000446862		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000494737		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000375726		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000448103		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589037	ENST00000508062		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
In-frame	ENST00000253788	ENST00000422698		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
In-frame	ENST00000253788	ENST00000441710		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000447913		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000433738		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000446862		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000494737		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000375726		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000448103		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000253788	ENST00000508062		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
In-frame	ENST00000589913	ENST00000422698		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
In-frame	ENST00000589913	ENST00000441710		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000447913		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000433738		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000446862		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000494737		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000375726		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000448103		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
5CDS-intron	ENST00000589913	ENST00000508062		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-3CDS	ENST00000590864	ENST00000422698		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-3CDS	ENST00000590864	ENST00000441710		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000447913		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000433738		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000446862		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000494737		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000375726		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000448103		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-intron	ENST00000590864	ENST00000508062		ChiTaRS3.1			EC578828	RPL27	chr17	41150848	+	CASP12	chr11	104761981	+
intron-3CDS	ENST00000285667	ENST00000255631		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000285667	ENST00000433386		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000285667	ENST00000376343		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000285667	ENST00000587922		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000544452	ENST00000255631		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000544452	ENST00000433386		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000544452	ENST00000376343		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000544452	ENST00000587922		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000478035	ENST00000255631		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000478035	ENST00000433386		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000478035	ENST00000376343		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
intron-3CDS	ENST00000478035	ENST00000587922		ChiTaRS3.1			R59785	HSPA13	chr21	15745027	-	HSPBP1	chr19	55789058	-
In-frame	ENST00000373710	ENST00000458031		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000373710	ENST00000494103		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000373710	ENST00000476854		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000373710	ENST00000476351		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000373710	ENST00000404366		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
5CDS-intron	ENST00000373710	ENST00000468068		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
intron-3CDS	ENST00000536859	ENST00000458031		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
intron-3CDS	ENST00000536859	ENST00000494103		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
intron-3CDS	ENST00000536859	ENST00000476854		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
intron-3CDS	ENST00000536859	ENST00000476351		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
intron-3CDS	ENST00000536859	ENST00000404366		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
intron-intron	ENST00000536859	ENST00000468068		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000373709	ENST00000458031		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000373709	ENST00000494103		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000373709	ENST00000476854		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000373709	ENST00000476351		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000373709	ENST00000404366		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
5CDS-intron	ENST00000373709	ENST00000468068		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000536384	ENST00000458031		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000536384	ENST00000494103		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000536384	ENST00000476854		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000536384	ENST00000476351		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
In-frame	ENST00000536384	ENST00000404366		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
5CDS-intron	ENST00000536384	ENST00000468068		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000491976	ENST00000458031		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000491976	ENST00000494103		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000491976	ENST00000476854		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000491976	ENST00000476351		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000491976	ENST00000404366		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
5CDS-intron	ENST00000491976	ENST00000468068		ChiTaRS3.1			BM924335	SERINC2	chr1	31907521	+	ACY1	chr3	52020620	+
Frame-shit	ENST00000429243	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000429243	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000429243	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000429243	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000429243	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000549924	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000549924	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000549924	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000549924	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000549924	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000551003	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000551003	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000551003	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000551003	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000551003	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
3UTR-3CDS	ENST00000549068	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
3UTR-3CDS	ENST00000549068	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
3UTR-5UTR	ENST00000549068	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
3UTR-5UTR	ENST00000549068	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
3UTR-intron	ENST00000549068	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
intron-3CDS	ENST00000549740	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
intron-3CDS	ENST00000549740	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
intron-5UTR	ENST00000549740	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
intron-5UTR	ENST00000549740	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
intron-intron	ENST00000549740	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000546581	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000546581	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000546581	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000546581	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000546581	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
In-frame	ENST00000549581	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
In-frame	ENST00000549581	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000549581	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000549581	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000549581	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
In-frame	ENST00000547368	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
In-frame	ENST00000547368	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000547368	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000547368	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000547368	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
In-frame	ENST00000379786	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
In-frame	ENST00000379786	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000379786	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000379786	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000379786	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000549135	ENST00000529163		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000549135	ENST00000394920		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000549135	ENST00000527914		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-5UTR	ENST00000549135	ENST00000262584		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
5CDS-intron	ENST00000549135	ENST00000528957		ChiTaRS3.1			BP306137	PRR13	chr12	53839831	+	RPL8	chr8	146017774	-
Frame-shit	ENST00000366730	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366730	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366730	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366730	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366730	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366730	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366730	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000391865	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000391865	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000391865	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000391865	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000391865	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000391865	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000391865	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366726	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366726	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366726	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366726	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366726	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366726	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366726	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000312726	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000312726	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000312726	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000312726	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000312726	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000312726	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000312726	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366728	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366728	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366728	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366728	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366728	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366728	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366728	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366723	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366723	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366723	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366723	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366723	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366723	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366723	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366722	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366722	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366722	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366722	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366722	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366722	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366722	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366721	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366721	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366721	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366721	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366721	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366721	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366721	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366718	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366718	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366718	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366718	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366718	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366718	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366718	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3CDS	ENST00000470040	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3CDS	ENST00000470040	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3CDS	ENST00000470040	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3CDS	ENST00000470040	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3CDS	ENST00000470040	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3CDS	ENST00000470040	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-3UTR	ENST00000470040	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366716	ENST00000370283		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366716	ENST00000547204		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366716	ENST00000519604		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366716	ENST00000519273		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366716	ENST00000370275		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
Frame-shit	ENST00000366716	ENST00000353546		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
5CDS-3UTR	ENST00000366716	ENST00000518794		ChiTaRS3.1			BM827801	GUK1	chr1	228333769	+	ARFGAP1	chr20	61916216	+
3UTR-5UTR	ENST00000367090	ENST00000357248		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-5UTR	ENST00000367090	ENST00000349721		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-5UTR	ENST00000367090	ENST00000382203		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-5UTR	ENST00000367090	ENST00000382194		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-intron	ENST00000367090	ENST00000491574		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-intron	ENST00000367090	ENST00000324954		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-intron	ENST00000367090	ENST00000302401		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-intron	ENST00000367090	ENST00000382186		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
3UTR-intron	ENST00000367090	ENST00000382185		ChiTaRS3.1			D26155	TMEM181	chr6	159055150	+	SMARCA2	chr9	2029019	+
5CDS-intron	ENST00000225724	ENST00000510377		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-3UTR	ENST00000225724	ENST00000307017		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-intron	ENST00000451249	ENST00000510377		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-3UTR	ENST00000451249	ENST00000307017		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-intron	ENST00000467337	ENST00000510377		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-3UTR	ENST00000467337	ENST00000307017		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-intron	ENST00000581721	ENST00000510377		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
5CDS-3UTR	ENST00000581721	ENST00000307017		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
intron-intron	ENST00000579905	ENST00000510377		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
intron-3UTR	ENST00000579905	ENST00000307017		ChiTaRS3.1			DA505648	GOSR1	chr17	28811281	+	USP38	chr4	144142328	+
intron-5UTR	ENST00000421182	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000357867	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000323926	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000336916	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000354785	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000357009	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000346544	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000345488	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000359671	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000446046	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000443816	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000432072	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000356005	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000490833	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
intron-5UTR	ENST00000426059	ENST00000238831		ChiTaRS3.1			BG423866	FN1	chr2	216251505	-	YIPF4	chr2	32503048	+
Frame-shit	ENST00000312397	ENST00000176183		ChiTaRS3.1			BQ186689	SART1	chr11	65744524	+	DRD4	chr11	637540	+
5CDS-intron	ENST00000312397	ENST00000528733		ChiTaRS3.1			BQ186689	SART1	chr11	65744524	+	DRD4	chr11	637540	+
intron-3CDS	ENST00000528573	ENST00000176183		ChiTaRS3.1			BQ186689	SART1	chr11	65744524	+	DRD4	chr11	637540	+
intron-intron	ENST00000528573	ENST00000528733		ChiTaRS3.1			BQ186689	SART1	chr11	65744524	+	DRD4	chr11	637540	+
3UTR-3UTR	ENST00000534336	ENST00000256495		ChiTaRS3.1			AA459608	MALAT1	chr11	65268252	+	BHLHE40	chr3	5025976	+
intron-3UTR	ENST00000507652	ENST00000482108		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
intron-intron	ENST00000507652	ENST00000488574		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
intron-intron	ENST00000507652	ENST00000465184		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-3UTR	ENST00000359240	ENST00000482108		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000359240	ENST00000488574		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000359240	ENST00000465184		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-3UTR	ENST00000445694	ENST00000482108		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000445694	ENST00000488574		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000445694	ENST00000465184		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-3UTR	ENST00000404450	ENST00000482108		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000404450	ENST00000488574		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000404450	ENST00000465184		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-3UTR	ENST00000514159	ENST00000482108		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000514159	ENST00000488574		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
5CDS-intron	ENST00000514159	ENST00000465184		ChiTaRS3.1			AF171931	ADAM29	chr4	175898962	+	PEG10	chr7	94295024	+
intron-intron	ENST00000452313	ENST00000418539		ChiTaRS3.1			BM920046	NPIPB7	chr16	28619612	-	BCYRN1	chrX	70519789	+
intron-intron	ENST00000371227	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371227	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371249	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000306402	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000353505	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371246	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000347291	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000393949	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371247	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000607232	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371245	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000361941	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000277982	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000354106	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371239	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000371241	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000405709		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000331762		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000452895		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000415362		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000447215		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000437687		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000489381		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-intron	ENST00000474353	ENST00000450877		ChiTaRS3.1			AA368148	SORBS1	chr10	97117526	-	IMMP2L	chr7	111035386	-
intron-5UTR	ENST00000362507	ENST00000378119		ChiTaRS3.1			DA658377	RNU5F-1	chr1	220215524	-	C6orf62	chr6	24719403	-
intron-intron	ENST00000362507	ENST00000540769		ChiTaRS3.1			DA658377	RNU5F-1	chr1	220215524	-	C6orf62	chr6	24719403	-
intron-intron	ENST00000362507	ENST00000378102		ChiTaRS3.1			DA658377	RNU5F-1	chr1	220215524	-	C6orf62	chr6	24719403	-
intron-3CDS	ENST00000512033	ENST00000511206		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
intron-3CDS	ENST00000512033	ENST00000287936		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
intron-3CDS	ENST00000512033	ENST00000343975		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
Frame-shit	ENST00000296679	ENST00000511206		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
Frame-shit	ENST00000296679	ENST00000287936		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
Frame-shit	ENST00000296679	ENST00000343975		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
5UTR-3CDS	ENST00000414719	ENST00000511206		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
5UTR-3CDS	ENST00000414719	ENST00000287936		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
5UTR-3CDS	ENST00000414719	ENST00000343975		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
Frame-shit	ENST00000507029	ENST00000511206		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
Frame-shit	ENST00000507029	ENST00000287936		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
Frame-shit	ENST00000507029	ENST00000343975		ChiTaRS3.1			DB238220	WDR41	chr5	76758920	-	HMGCR	chr5	74647342	+
intron-intron	ENST00000251636	ENST00000375400		ChiTaRS3.1			BQ310859	DHX29	chr5	54577247	-	SVIL	chr10	29926553	-
intron-intron	ENST00000251636	ENST00000375398		ChiTaRS3.1			BQ310859	DHX29	chr5	54577247	-	SVIL	chr10	29926553	-
intron-intron	ENST00000251636	ENST00000355867		ChiTaRS3.1			BQ310859	DHX29	chr5	54577247	-	SVIL	chr10	29926553	-
intron-intron	ENST00000251636	ENST00000535393		ChiTaRS3.1			BQ310859	DHX29	chr5	54577247	-	SVIL	chr10	29926553	-
intron-intron	ENST00000251636	ENST00000460007		ChiTaRS3.1			BQ310859	DHX29	chr5	54577247	-	SVIL	chr10	29926553	-
intron-intron	ENST00000251636	ENST00000538146		ChiTaRS3.1			BQ310859	DHX29	chr5	54577247	-	SVIL	chr10	29926553	-
3UTR-3CDS	ENST00000353703	ENST00000373189		ChiTaRS3.1			BU626199	YWHAB	chr20	43536698	-	SLC29A3	chr10	73122114	-
3UTR-3UTR	ENST00000353703	ENST00000469204		ChiTaRS3.1			BU626199	YWHAB	chr20	43536698	-	SLC29A3	chr10	73122114	-
intron-3CDS	ENST00000479421	ENST00000373189		ChiTaRS3.1			BU626199	YWHAB	chr20	43536698	-	SLC29A3	chr10	73122114	-
intron-3UTR	ENST00000479421	ENST00000469204		ChiTaRS3.1			BU626199	YWHAB	chr20	43536698	-	SLC29A3	chr10	73122114	-
3UTR-3CDS	ENST00000372839	ENST00000373189		ChiTaRS3.1			BU626199	YWHAB	chr20	43536698	-	SLC29A3	chr10	73122114	-
3UTR-3UTR	ENST00000372839	ENST00000469204		ChiTaRS3.1			BU626199	YWHAB	chr20	43536698	-	SLC29A3	chr10	73122114	-
intron-intron	ENST00000609205	ENST00000483271		ChiTaRS3.1			AI864511	MSN	chrX	64961603	-	CNST	chr1	246831279	-
intron-3UTR	ENST00000609205	ENST00000366513		ChiTaRS3.1			AI864511	MSN	chrX	64961603	-	CNST	chr1	246831279	-
intron-intron	ENST00000609205	ENST00000366512		ChiTaRS3.1			AI864511	MSN	chrX	64961603	-	CNST	chr1	246831279	-
3UTR-intron	ENST00000360270	ENST00000483271		ChiTaRS3.1			AI864511	MSN	chrX	64961603	-	CNST	chr1	246831279	-
3UTR-3UTR	ENST00000360270	ENST00000366513		ChiTaRS3.1			AI864511	MSN	chrX	64961603	-	CNST	chr1	246831279	-
3UTR-intron	ENST00000360270	ENST00000366512		ChiTaRS3.1			AI864511	MSN	chrX	64961603	-	CNST	chr1	246831279	-
3UTR-3CDS	ENST00000326764	ENST00000389629		ChiTaRS3.1			AL833879	LENG8	chr19	54972580	+	RTF1	chr15	41709475	+
3UTR-3UTR	ENST00000326764	ENST00000462276		ChiTaRS3.1			AL833879	LENG8	chr19	54972580	+	RTF1	chr15	41709475	+
intron-3CDS	ENST00000376514	ENST00000389629		ChiTaRS3.1			AL833879	LENG8	chr19	54972580	+	RTF1	chr15	41709475	+
intron-3UTR	ENST00000376514	ENST00000462276		ChiTaRS3.1			AL833879	LENG8	chr19	54972580	+	RTF1	chr15	41709475	+
intron-3UTR	ENST00000398868	ENST00000265981		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-intron	ENST00000398868	ENST00000528665		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-3UTR	ENST00000332645	ENST00000265981		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-intron	ENST00000332645	ENST00000528665		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-3UTR	ENST00000538786	ENST00000265981		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-intron	ENST00000538786	ENST00000528665		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-3UTR	ENST00000535789	ENST00000265981		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-intron	ENST00000535789	ENST00000528665		ChiTaRS3.1			BG254715	ATL3	chr11	63393422	-	RNF141	chr11	10535345	-
intron-3CDS	ENST00000285046	ENST00000505059		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000285046	ENST00000505818		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000285046	ENST00000508987		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000285046	ENST00000382647		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000543601	ENST00000505059		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000543601	ENST00000505818		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000543601	ENST00000508987		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000543601	ENST00000382647		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000476851	ENST00000505059		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000476851	ENST00000505818		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000476851	ENST00000508987		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3CDS	ENST00000476851	ENST00000382647		ChiTaRS3.1			H26225	FGD5	chr3	14930437	+	MRPL36	chr5	1798872	-
intron-3UTR	ENST00000395131	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374606	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374610	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000374607	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000463584	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000445559	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000452658	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000448594	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547952	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000491095	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000412289	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000425878	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000442285	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000552711	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000474406	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000431830	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000432391	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000451970	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000547641	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000468094	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399385	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000399383	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000383207	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
5CDS-3UTR	ENST00000548040	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3UTR	ENST00000482292	ENST00000293677		ChiTaRS3.1			BC002848	PFDN6	chr6	4490752	+	RAVER1	chr19	10427510	-
intron-3CDS	ENST00000313486	ENST00000301807		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-3CDS	ENST00000313486	ENST00000429976		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-3CDS	ENST00000313486	ENST00000428977		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-intron	ENST00000313486	ENST00000463984		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-3CDS	ENST00000539476	ENST00000301807		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-3CDS	ENST00000539476	ENST00000429976		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-3CDS	ENST00000539476	ENST00000428977		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-intron	ENST00000539476	ENST00000463984		ChiTaRS3.1			EL593646	PITPNA	chr17	1421796	-	TRANK1	chr3	36897903	-
intron-intron	ENST00000437600	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000437600	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000437600	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000292538	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000292538	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000292538	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000393824	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000393824	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000393824	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000547394	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000547394	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000547394	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000360264	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000360264	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000360264	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000425244	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000425244	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000425244	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000292535	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000292535	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000292535	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000549414	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000549414	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000549414	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000556210	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000556210	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000556210	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000550008	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000550008	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000550008	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000546411	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000546411	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000546411	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000560541	ENST00000278616		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000560541	ENST00000452508		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
intron-intron	ENST00000560541	ENST00000525178		ChiTaRS3.1			BP431950	CUX1	chr7	101708373	-	ATM	chr11	108105555	+
Frame-shit	ENST00000540468	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000540468	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000540468	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000540468	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000539919	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000539919	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000539919	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000539919	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000258091	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000258091	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000258091	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000258091	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000398422	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000398422	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000398422	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000398422	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000537131	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000537131	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000537131	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
In-frame	ENST00000537131	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000538797	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000538797	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000538797	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
Frame-shit	ENST00000538797	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
intron-3CDS	ENST00000473786	ENST00000223054		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
intron-3CDS	ENST00000473786	ENST00000379527		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
intron-3CDS	ENST00000473786	ENST00000393950		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
intron-3CDS	ENST00000473786	ENST00000424091		ChiTaRS3.1			AI183764	CCT7	chr2	73479943	-	MOSPD3	chr7	100211320	-
intron-5UTR	ENST00000380542	ENST00000382582		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000355994		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000397875		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000397866		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000397865		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000527041		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-intron	ENST00000380542	ENST00000359645		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000528160		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000397869		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000354542		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000526111		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000580402		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000579129		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000578193		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000397863		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000397860		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000380542	ENST00000487778		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000382582		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000355994		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000397875		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000397866		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000397865		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000527041		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-intron	ENST00000469089	ENST00000359645		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000528160		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000397869		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000354542		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000526111		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000580402		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000579129		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000578193		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000397863		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000397860		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000469089	ENST00000487778		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000382582		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000355994		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000397875		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000397866		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000397865		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000527041		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-intron	ENST00000526115	ENST00000359645		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000528160		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000397869		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000354542		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000526111		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000580402		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000579129		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000578193		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000397863		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000397860		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000526115	ENST00000487778		ChiTaRS3.1			DA264641	NAP1L4	chr11	2985001	-	MBP	chr18	74729011	-
intron-3CDS	ENST00000356205	ENST00000259089		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000356205	ENST00000529894		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-intron	ENST00000356205	ENST00000525389		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000368623	ENST00000259089		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000368623	ENST00000529894		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-intron	ENST00000368623	ENST00000525389		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000368621	ENST00000259089		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000368621	ENST00000529894		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-intron	ENST00000368621	ENST00000525389		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000310483	ENST00000259089		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000310483	ENST00000529894		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-intron	ENST00000310483	ENST00000525389		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000537590	ENST00000259089		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000537590	ENST00000529894		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-intron	ENST00000537590	ENST00000525389		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000461071	ENST00000259089		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-3CDS	ENST00000461071	ENST00000529894		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
intron-intron	ENST00000461071	ENST00000525389		ChiTaRS3.1			BF743866	SLC39A1	chr1	153932381	-	BLK	chr8	11406547	+
In-frame	ENST00000279907	ENST00000356151		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000302779		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000383716		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000463280		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000383715		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000484288		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000479241		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000279907	ENST00000536660		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
In-frame	ENST00000356828	ENST00000356151		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000302779		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000383716		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000463280		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000383715		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000484288		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000479241		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
5CDS-intron	ENST00000356828	ENST00000536660		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-3CDS	ENST00000545232	ENST00000356151		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000302779		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000383716		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000463280		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000383715		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000484288		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000479241		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-intron	ENST00000545232	ENST00000536660		ChiTaRS3.1			BG166334	UHRF1BP1L	chr12	100536369	-	PXK	chr3	58351599	+
intron-3UTR	ENST00000391826	ENST00000317702		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000391826	ENST00000591909		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000391826	ENST00000586653		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000391826	ENST00000592683		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000391826	ENST00000590967		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000391826	ENST00000591208		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-3UTR	ENST00000595948	ENST00000317702		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000595948	ENST00000591909		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000595948	ENST00000586653		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000595948	ENST00000592683		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000595948	ENST00000590967		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000595948	ENST00000591208		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-3UTR	ENST00000341114	ENST00000317702		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000341114	ENST00000591909		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000341114	ENST00000586653		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000341114	ENST00000592683		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000341114	ENST00000590967		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-intron	ENST00000341114	ENST00000591208		ChiTaRS3.1			BU927907	IL4I1	chr19	50410779	-	TUBB6	chr18	12326345	+
intron-3CDS	ENST00000310351	ENST00000355875		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000310351	ENST00000366541		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000310351	ENST00000343783		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000310351	ENST00000391846		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3UTR	ENST00000310351	ENST00000496361		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000488653	ENST00000355875		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000488653	ENST00000366541		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000488653	ENST00000343783		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000488653	ENST00000391846		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5CDS-3UTR	ENST00000488653	ENST00000496361		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000485727	ENST00000355875		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000485727	ENST00000366541		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000485727	ENST00000343783		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000485727	ENST00000391846		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3UTR	ENST00000485727	ENST00000496361		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000489746	ENST00000355875		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000489746	ENST00000366541		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000489746	ENST00000343783		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3CDS	ENST00000489746	ENST00000391846		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
intron-3UTR	ENST00000489746	ENST00000496361		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000433542	ENST00000355875		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000433542	ENST00000366541		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000433542	ENST00000343783		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
In-frame	ENST00000433542	ENST00000391846		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5CDS-3UTR	ENST00000433542	ENST00000496361		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5UTR-3CDS	ENST00000483247	ENST00000355875		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5UTR-3CDS	ENST00000483247	ENST00000366541		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5UTR-3CDS	ENST00000483247	ENST00000343783		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5UTR-3CDS	ENST00000483247	ENST00000391846		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5UTR-3UTR	ENST00000483247	ENST00000496361		ChiTaRS3.1			AA328928	CCDC14	chr3	123679990	-	SDCCAG8	chr1	243468013	+
5UTR-5UTR	ENST00000405591	ENST00000265304		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000405591	ENST00000498107		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-3UTR	ENST00000405591	ENST00000469123		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000405591	ENST00000465582		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000405591	ENST00000484178		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000405591	ENST00000481508		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000431572	ENST00000265304		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000431572	ENST00000498107		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-3UTR	ENST00000431572	ENST00000469123		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000431572	ENST00000465582		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000431572	ENST00000484178		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000431572	ENST00000481508		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381116	ENST00000265304		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381116	ENST00000498107		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-3UTR	ENST00000381116	ENST00000469123		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381116	ENST00000465582		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381116	ENST00000484178		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381116	ENST00000481508		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381120	ENST00000265304		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381120	ENST00000498107		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-3UTR	ENST00000381120	ENST00000469123		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381120	ENST00000465582		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381120	ENST00000484178		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000381120	ENST00000481508		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000461838	ENST00000265304		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000461838	ENST00000498107		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-3UTR	ENST00000461838	ENST00000469123		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000461838	ENST00000465582		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000461838	ENST00000484178		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
5UTR-5UTR	ENST00000461838	ENST00000481508		ChiTaRS3.1			DA280527	MTIF3	chr13	28019224	-	SSBP1	chr7	141438922	+
intron-3CDS	ENST00000313899	ENST00000379471		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000313899	ENST00000464829		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000313899	ENST00000455041		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-3CDS	ENST00000353341	ENST00000379471		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000353341	ENST00000464829		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000353341	ENST00000455041		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-3CDS	ENST00000543098	ENST00000379471		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000543098	ENST00000464829		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000543098	ENST00000455041		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-3CDS	ENST00000352301	ENST00000379471		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000352301	ENST00000464829		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000352301	ENST00000455041		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-3CDS	ENST00000508119	ENST00000379471		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000508119	ENST00000464829		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000508119	ENST00000455041		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-3CDS	ENST00000541060	ENST00000379471		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000541060	ENST00000464829		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
intron-intron	ENST00000541060	ENST00000455041		ChiTaRS3.1			BM835099	HNRNPD	chr4	83294848	-	NOL6	chr9	33466171	-
3UTR-intron	ENST00000268711	ENST00000368559		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
3UTR-intron	ENST00000268711	ENST00000368553		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
3UTR-intron	ENST00000268711	ENST00000271854		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000580462	ENST00000368559		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000580462	ENST00000368553		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000580462	ENST00000271854		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000585041	ENST00000368559		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000585041	ENST00000368553		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000585041	ENST00000271854		ChiTaRS3.1			AW966566	MED9	chr17	17395121	+	NUP210L	chr1	154115671	-
intron-intron	ENST00000314011	ENST00000405493		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000314011	ENST00000449771		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000314011	ENST00000549151		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000314011	ENST00000389212		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000314011	ENST00000171000		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000314011	ENST00000548919		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-3UTR	ENST00000314011	ENST00000395358		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000314011	ENST00000549347		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000405493		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000449771		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000549151		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000389212		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000171000		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000548919		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-3UTR	ENST00000374608	ENST00000395358		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
intron-intron	ENST00000374608	ENST00000549347		ChiTaRS3.1			BF841153	ZNF436	chr1	23686904	-	RAPGEF3	chr12	48140166	-
In-frame	ENST00000332674	ENST00000394997		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000332674	ENST00000337138		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000332674	ENST00000323441		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000332674	ENST00000557538		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000332674	ENST00000539097		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
5CDS-intron	ENST00000332674	ENST00000557206		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000361248	ENST00000394997		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000361248	ENST00000337138		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000361248	ENST00000323441		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000361248	ENST00000557538		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000361248	ENST00000539097		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
5CDS-intron	ENST00000361248	ENST00000557206		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000239007	ENST00000394997		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000239007	ENST00000337138		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000239007	ENST00000323441		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000239007	ENST00000557538		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000239007	ENST00000539097		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
5CDS-intron	ENST00000239007	ENST00000557206		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000393134	ENST00000394997		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000393134	ENST00000337138		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000393134	ENST00000323441		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000393134	ENST00000557538		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000393134	ENST00000539097		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
5CDS-intron	ENST00000393134	ENST00000557206		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
3UTR-3CDS	ENST00000485566	ENST00000394997		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
3UTR-3CDS	ENST00000485566	ENST00000337138		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
3UTR-3CDS	ENST00000485566	ENST00000323441		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
3UTR-3CDS	ENST00000485566	ENST00000557538		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
3UTR-3CDS	ENST00000485566	ENST00000539097		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
3UTR-intron	ENST00000485566	ENST00000557206		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000369612	ENST00000394997		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000369612	ENST00000337138		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000369612	ENST00000323441		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000369612	ENST00000557538		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
In-frame	ENST00000369612	ENST00000539097		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
5CDS-intron	ENST00000369612	ENST00000557206		ChiTaRS3.1			BE767238	MXI1	chr10	112039052	+	HIF1A	chr14	62207754	+
5CDS-intron	ENST00000251472	ENST00000225823		ChiTaRS3.1			DA113340	MAST1	chr19	12951320	+	ASIC2	chr17	31582128	-
5CDS-intron	ENST00000251472	ENST00000359872		ChiTaRS3.1			DA113340	MAST1	chr19	12951320	+	ASIC2	chr17	31582128	-
5CDS-intron	ENST00000251472	ENST00000448983		ChiTaRS3.1			DA113340	MAST1	chr19	12951320	+	ASIC2	chr17	31582128	-
5CDS-intron	ENST00000591495	ENST00000225823		ChiTaRS3.1			DA113340	MAST1	chr19	12951320	+	ASIC2	chr17	31582128	-
5CDS-intron	ENST00000591495	ENST00000359872		ChiTaRS3.1			DA113340	MAST1	chr19	12951320	+	ASIC2	chr17	31582128	-
5CDS-intron	ENST00000591495	ENST00000448983		ChiTaRS3.1			DA113340	MAST1	chr19	12951320	+	ASIC2	chr17	31582128	-
intron-intron	ENST00000534358	ENST00000446906		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000534358	ENST00000377072		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000534358	ENST00000307729		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000534358	ENST00000377059		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000446906		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000377072		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000307729		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000377059		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000446906		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000377072		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000307729		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000377059		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000446906		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000377072		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000307729		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000377059		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			AF242207	KMT2A	chr11	118352983	+	MLLT10	chr10	22015355	+
intron-3CDS	ENST00000481781	ENST00000374855		ChiTaRS3.1			AI061606	INS-IGF2	chr11	2153036	-	ALDOB	chr9	104193146	-
intron-intron	ENST00000481781	ENST00000468981		ChiTaRS3.1			AI061606	INS-IGF2	chr11	2153036	-	ALDOB	chr9	104193146	-
intron-3CDS	ENST00000397270	ENST00000374855		ChiTaRS3.1			AI061606	INS-IGF2	chr11	2153036	-	ALDOB	chr9	104193146	-
intron-intron	ENST00000397270	ENST00000468981		ChiTaRS3.1			AI061606	INS-IGF2	chr11	2153036	-	ALDOB	chr9	104193146	-
3UTR-3CDS	ENST00000605096	ENST00000283882		ChiTaRS3.1			AK300768	MILR1	chr17	62463763	+	CFDP1	chr16	75429108	-
3UTR-intron	ENST00000605096	ENST00000564286		ChiTaRS3.1			AK300768	MILR1	chr17	62463763	+	CFDP1	chr16	75429108	-
Frame-shit	ENST00000304992	ENST00000422447		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
In-frame	ENST00000304992	ENST00000430553		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000304992	ENST00000396222		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000304992	ENST00000227157		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000304992	ENST00000540430		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000304992	ENST00000379412		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000304992	ENST00000542179		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
Frame-shit	ENST00000572621	ENST00000422447		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
Frame-shit	ENST00000572621	ENST00000430553		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000572621	ENST00000396222		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000572621	ENST00000227157		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000572621	ENST00000540430		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000572621	ENST00000379412		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
5CDS-intron	ENST00000572621	ENST00000542179		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-3CDS	ENST00000575116	ENST00000422447		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-3CDS	ENST00000575116	ENST00000430553		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-intron	ENST00000575116	ENST00000396222		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-intron	ENST00000575116	ENST00000227157		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-intron	ENST00000575116	ENST00000540430		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-intron	ENST00000575116	ENST00000379412		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-intron	ENST00000575116	ENST00000542179		ChiTaRS3.1			BG122659	PRPF8	chr17	1579226	-	LDHA	chr11	18428658	+
intron-3CDS	ENST00000403829	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000298687	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000350792	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397858	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000554104	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000555158	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000553503	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397853	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000360463	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000556147	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397856	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397855	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000554143	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397851	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397847	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000298684	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000397844	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-3CDS	ENST00000554277	ENST00000316448		ChiTaRS3.1			BF873592	NDRG2	chr14	21485187	-	CALR	chr19	13054348	+
intron-intron	ENST00000227638	ENST00000227638		ChiTaRS3.1			AA420506	PANX1	chr11	93867609	+	PANX1	chr11	93867488	-
intron-intron	ENST00000227638	ENST00000436171		ChiTaRS3.1			AA420506	PANX1	chr11	93867609	+	PANX1	chr11	93867488	-
intron-intron	ENST00000436171	ENST00000227638		ChiTaRS3.1			AA420506	PANX1	chr11	93867609	+	PANX1	chr11	93867488	-
intron-intron	ENST00000436171	ENST00000436171		ChiTaRS3.1			AA420506	PANX1	chr11	93867609	+	PANX1	chr11	93867488	-
In-frame	ENST00000534358	ENST00000503238		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000358350		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
In-frame	ENST00000534358	ENST00000537810		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000264319		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000507711		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000514783		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000534358	ENST00000507873		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000534358	ENST00000506685		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000503238		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000358350		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
In-frame	ENST00000389506	ENST00000537810		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000264319		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000507711		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000514783		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-5UTR	ENST00000389506	ENST00000507873		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
5CDS-intron	ENST00000389506	ENST00000506685		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000354520	ENST00000503238		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000354520	ENST00000358350		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000354520	ENST00000537810		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-5UTR	ENST00000354520	ENST00000264319		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-intron	ENST00000354520	ENST00000507711		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-intron	ENST00000354520	ENST00000514783		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-5UTR	ENST00000354520	ENST00000507873		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-intron	ENST00000354520	ENST00000506685		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000420751	ENST00000503238		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000420751	ENST00000358350		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000420751	ENST00000537810		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-5UTR	ENST00000420751	ENST00000264319		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-intron	ENST00000420751	ENST00000507711		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-intron	ENST00000420751	ENST00000514783		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-5UTR	ENST00000420751	ENST00000507873		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-intron	ENST00000420751	ENST00000506685		ChiTaRS3.1			DQ299938	KMT2A	chr11	118355690	+	FRYL	chr4	48530355	-
intron-3CDS	ENST00000439649	ENST00000397086		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000320225		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000566458		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000566397		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000565678		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000561718		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000568631		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000569598		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000301730		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000439649	ENST00000567147		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000397086		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000320225		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000566458		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000566397		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000565678		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000561718		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000568631		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000569598		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000301730		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000369236	ENST00000567147		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000397086		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000320225		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000566458		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000566397		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000565678		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000561718		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000568631		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000569598		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000301730		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000355422	ENST00000567147		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000397086		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000320225		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000566458		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000566397		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000565678		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000561718		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000568631		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000569598		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000301730		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000544592	ENST00000567147		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000397086		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000320225		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000566458		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000566397		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000565678		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000561718		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000568631		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000569598		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000301730		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
intron-3CDS	ENST00000490345	ENST00000567147		ChiTaRS3.1			BG272918	GFRA1	chr10	117823560	+	RNPS1	chr16	2312286	+
3UTR-3UTR	ENST00000356978	ENST00000539261		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-3UTR	ENST00000356978	ENST00000228938		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000539261		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000447653	ENST00000228938		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000539261		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000555132	ENST00000228938		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000539261		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000553542	ENST00000228938		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000539261		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
intron-3UTR	ENST00000544280	ENST00000228938		ChiTaRS3.1			BE813679	CALM1	chr14	90874245	+	MGP	chr12	15035035	-
3UTR-5UTR	ENST00000377093	ENST00000264335		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
3UTR-5UTR	ENST00000377093	ENST00000571732		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
3UTR-intron	ENST00000377093	ENST00000573026		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
3UTR-intron	ENST00000377093	ENST00000575977		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
3UTR-intron	ENST00000377093	ENST00000498643		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000263934	ENST00000264335		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000263934	ENST00000571732		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000263934	ENST00000573026		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000263934	ENST00000575977		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000263934	ENST00000498643		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000377086	ENST00000264335		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000377086	ENST00000571732		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377086	ENST00000573026		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377086	ENST00000575977		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377086	ENST00000498643		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000377083	ENST00000264335		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000377083	ENST00000571732		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377083	ENST00000573026		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377083	ENST00000575977		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377083	ENST00000498643		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000377081	ENST00000264335		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000377081	ENST00000571732		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377081	ENST00000573026		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377081	ENST00000575977		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000377081	ENST00000498643		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000465635	ENST00000264335		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-5UTR	ENST00000465635	ENST00000571732		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000465635	ENST00000573026		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000465635	ENST00000575977		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
intron-intron	ENST00000465635	ENST00000498643		ChiTaRS3.1			DA564386	KIF1B	chr1	10366986	+	YWHAE	chr17	1303514	-
Frame-shit	ENST00000320583	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000320583	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000320583	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000357864	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000357864	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000357864	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000252713	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000252713	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000252713	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000454654	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000454654	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000454654	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000449244	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000449244	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000449244	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000425063	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000425063	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000425063	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000493277	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000493277	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000493277	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000424881	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000424881	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000424881	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000440391	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000440391	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000440391	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000394163	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
Frame-shit	ENST00000394163	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
5CDS-5UTR	ENST00000394163	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
intron-3CDS	ENST00000419215	ENST00000404141		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
intron-3CDS	ENST00000419215	ENST00000397192		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
intron-5UTR	ENST00000419215	ENST00000473219		ChiTaRS3.1			DC390148	ZNF655	chr7	99158320	+	PAXIP1	chr7	154790495	-
In-frame	ENST00000344041	ENST00000541515		ChiTaRS3.1			DA302213	RAPGEF5	chr7	22232984	-	LUC7L2	chr7	139060804	+
5UTR-3CDS	ENST00000475788	ENST00000541515		ChiTaRS3.1			DA302213	RAPGEF5	chr7	22232984	-	LUC7L2	chr7	139060804	+
intron-3CDS	ENST00000405243	ENST00000541515		ChiTaRS3.1			DA302213	RAPGEF5	chr7	22232984	-	LUC7L2	chr7	139060804	+
Frame-shit	ENST00000401957	ENST00000541515		ChiTaRS3.1			DA302213	RAPGEF5	chr7	22232984	-	LUC7L2	chr7	139060804	+
intron-3CDS	ENST00000371711	ENST00000348956		ChiTaRS3.1			CX164716	B4GALT5	chr20	48250835	-	CKB	chr14	103988721	-
intron-3UTR	ENST00000366978	ENST00000358598		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366978	ENST00000392711		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366978	ENST00000589228		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366978	ENST00000536854		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366978	ENST00000586397		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366978	ENST00000588188		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366977	ENST00000358598		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366977	ENST00000392711		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366977	ENST00000589228		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366977	ENST00000536854		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366977	ENST00000586397		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366977	ENST00000588188		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000422588	ENST00000358598		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000422588	ENST00000392711		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000422588	ENST00000589228		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000422588	ENST00000536854		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000422588	ENST00000586397		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000422588	ENST00000588188		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366975	ENST00000358598		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366975	ENST00000392711		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366975	ENST00000589228		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366975	ENST00000536854		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366975	ENST00000586397		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366975	ENST00000588188		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366976	ENST00000358598		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366976	ENST00000392711		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366976	ENST00000589228		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000366976	ENST00000536854		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366976	ENST00000586397		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000366976	ENST00000588188		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000473995	ENST00000358598		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000473995	ENST00000392711		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000473995	ENST00000589228		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-3UTR	ENST00000473995	ENST00000536854		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000473995	ENST00000586397		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-intron	ENST00000473995	ENST00000588188		ChiTaRS3.1			BI550151	NSL1	chr1	212977979	+	PRKAR1A	chr17	66526896	+
intron-5UTR	ENST00000384338	ENST00000354724		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
intron-5UTR	ENST00000384338	ENST00000337919		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
intron-intron	ENST00000384338	ENST00000435063		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
intron-intron	ENST00000384338	ENST00000523976		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
5CDS-5UTR	ENST00000364995	ENST00000354724		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
5CDS-5UTR	ENST00000364995	ENST00000337919		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
5CDS-intron	ENST00000364995	ENST00000435063		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
5CDS-intron	ENST00000364995	ENST00000523976		ChiTaRS3.1			DA946891	SNHG5	chr6	86387308	-	HEY1	chr8	80680002	-
intron-intron	ENST00000518527	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
intron-intron	ENST00000377360	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
intron-intron	ENST00000328939	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
intron-intron	ENST00000390656	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
intron-intron	ENST00000520740	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
intron-intron	ENST00000434108	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
intron-intron	ENST00000411494	ENST00000384994		ChiTaRS3.1			BF889071	KCNIP1	chr5	169805416	-	NEAT1	chr11	65190451	+
5CDS-intron	ENST00000301740	ENST00000390548		ChiTaRS3.1			BE149493	SRRM2	chr16	2809159	+	IGHG1	chr14	106091295	-
intron-intron	ENST00000574593	ENST00000390548		ChiTaRS3.1			BE149493	SRRM2	chr16	2809159	+	IGHG1	chr14	106091295	-
intron-3CDS	ENST00000418539	ENST00000344063		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000431533		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000428193		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000558815		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-3UTR	ENST00000418539	ENST00000560583		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000560055		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000559463		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-3UTR	ENST00000418539	ENST00000558131		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000558752		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
intron-intron	ENST00000418539	ENST00000458349		ChiTaRS3.1			BQ653766	BCYRN1	chrX	70517282	+	RPL28	chr19	55899686	+
5CDS-5UTR	ENST00000471889	ENST00000593149		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000471889	ENST00000248342		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-3UTR	ENST00000471889	ENST00000593062		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000471889	ENST00000538434		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000471889	ENST00000588934		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000471889	ENST00000545173		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000471889	ENST00000592558		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000377479	ENST00000593149		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000377479	ENST00000248342		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-3UTR	ENST00000377479	ENST00000593062		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000377479	ENST00000538434		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000377479	ENST00000588934		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000377479	ENST00000545173		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000377479	ENST00000592558		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000289877	ENST00000593149		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000289877	ENST00000248342		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-3UTR	ENST00000289877	ENST00000593062		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000289877	ENST00000538434		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000289877	ENST00000588934		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000289877	ENST00000545173		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
5CDS-5UTR	ENST00000289877	ENST00000592558		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-5UTR	ENST00000481265	ENST00000593149		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-5UTR	ENST00000481265	ENST00000248342		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-3UTR	ENST00000481265	ENST00000593062		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-5UTR	ENST00000481265	ENST00000538434		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-5UTR	ENST00000481265	ENST00000588934		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-5UTR	ENST00000481265	ENST00000545173		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-5UTR	ENST00000481265	ENST00000592558		ChiTaRS3.1			BE909212	SLC45A1	chr1	8399611	+	EIF3K	chr19	39109846	+
intron-intron	ENST00000357393	ENST00000443314		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000357393	ENST00000441020		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000357393	ENST00000450366		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000357393	ENST00000233714		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000357393	ENST00000431941		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000370001	ENST00000443314		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000370001	ENST00000441020		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000370001	ENST00000450366		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000370001	ENST00000233714		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000370001	ENST00000431941		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000477908	ENST00000443314		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000477908	ENST00000441020		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000477908	ENST00000450366		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000477908	ENST00000233714		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000477908	ENST00000431941		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369994	ENST00000443314		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369994	ENST00000441020		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369994	ENST00000450366		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369994	ENST00000233714		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369994	ENST00000431941		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369995	ENST00000443314		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369995	ENST00000441020		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369995	ENST00000450366		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369995	ENST00000233714		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
intron-intron	ENST00000369995	ENST00000431941		ChiTaRS3.1			CN347114	AKNAD1	chr1	109474858	-	LANCL1	chr2	211329631	+
3UTR-intron	ENST00000322764	ENST00000542265		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000322764	ENST00000542314		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000322764	ENST00000538804		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-3UTR	ENST00000322764	ENST00000539446		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000322764	ENST00000535200		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000449423	ENST00000542265		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000449423	ENST00000542314		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000449423	ENST00000538804		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-3UTR	ENST00000449423	ENST00000539446		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000449423	ENST00000535200		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000392910	ENST00000542265		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000392910	ENST00000542314		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000392910	ENST00000538804		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-3UTR	ENST00000392910	ENST00000539446		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
3UTR-intron	ENST00000392910	ENST00000535200		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
intron-intron	ENST00000477373	ENST00000542265		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
intron-intron	ENST00000477373	ENST00000542314		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
intron-intron	ENST00000477373	ENST00000538804		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
intron-3UTR	ENST00000477373	ENST00000539446		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
intron-intron	ENST00000477373	ENST00000535200		ChiTaRS3.1			AW139385	ZYX	chr7	143088011	-	PXN-AS1	chr12	120649100	+
intron-3UTR	ENST00000511998	ENST00000294008		ChiTaRS3.1			AX747004	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-3UTR	ENST00000433902	ENST00000294008		ChiTaRS3.1			AX747004	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
5CDS-3UTR	ENST00000383461	ENST00000294008		ChiTaRS3.1			AX747004	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-3UTR	ENST00000537780	ENST00000294008		ChiTaRS3.1			AX747004	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-3UTR	ENST00000502789	ENST00000294008		ChiTaRS3.1			AX747004	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
3UTR-5UTR	ENST00000355280	ENST00000604900		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000412716		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000449723		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000549555		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000439799		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000425012		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000355280	ENST00000549732		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000355280	ENST00000551534		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000355280	ENST00000551313		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000604900		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000412716		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000449723		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000549555		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000439799		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000425012		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-5UTR	ENST00000347992	ENST00000549732		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000347992	ENST00000551534		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
3UTR-intron	ENST00000347992	ENST00000551313		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000604900		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000412716		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000449723		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000549555		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000439799		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000425012		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-5UTR	ENST00000453408	ENST00000549732		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-intron	ENST00000453408	ENST00000551534		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-intron	ENST00000453408	ENST00000551313		ChiTaRS3.1			AW964905	MINK1	chr17	4801127	+	DAZAP2	chr12	51632677	+
intron-intron	ENST00000375514	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000375514	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000375514	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000415876	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000415876	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000415876	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000535165	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000535165	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000535165	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000493021	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000493021	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000493021	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000272716	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000272716	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000272716	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000446997	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000446997	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000446997	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000421911	ENST00000544392		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-3UTR	ENST00000421911	ENST00000369151		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-intron	ENST00000421911	ENST00000340214		ChiTaRS3.1			AW182981	SLC4A10	chr2	162711926	-	CACUL1	chr10	120441208	+
intron-5UTR	ENST00000389467	ENST00000261667		ChiTaRS3.1			DA481995	SMG1	chr16	18937326	+	KPNA3	chr13	50366697	-
intron-5UTR	ENST00000446231	ENST00000261667		ChiTaRS3.1			DA481995	SMG1	chr16	18937326	+	KPNA3	chr13	50366697	-
intron-5UTR	ENST00000565224	ENST00000261667		ChiTaRS3.1			DA481995	SMG1	chr16	18937326	+	KPNA3	chr13	50366697	-
intron-5UTR	ENST00000567737	ENST00000261667		ChiTaRS3.1			DA481995	SMG1	chr16	18937326	+	KPNA3	chr13	50366697	-
3UTR-3CDS	ENST00000519948	ENST00000228140		ChiTaRS3.1			BG110883	ATXN7L3B	chr12	74933276	+	RPS13	chr11	17098766	-
3UTR-5UTR	ENST00000519948	ENST00000526895		ChiTaRS3.1			BG110883	ATXN7L3B	chr12	74933276	+	RPS13	chr11	17098766	-
3UTR-5UTR	ENST00000519948	ENST00000525634		ChiTaRS3.1			BG110883	ATXN7L3B	chr12	74933276	+	RPS13	chr11	17098766	-
intron-3CDS	ENST00000524189	ENST00000246957		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000524189	ENST00000575671		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000524189	ENST00000538171		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-intron	ENST00000524189	ENST00000573872		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000521515	ENST00000246957		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000521515	ENST00000575671		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000521515	ENST00000538171		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-intron	ENST00000521515	ENST00000573872		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000404075	ENST00000246957		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000404075	ENST00000575671		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-3CDS	ENST00000404075	ENST00000538171		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-intron	ENST00000404075	ENST00000573872		ChiTaRS3.1			BE728037	KIF13B	chr8	29037628	-	TRAP1	chr16	3713503	-
intron-intron	ENST00000320201	ENST00000361475		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000320201	ENST00000536701		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000320201	ENST00000536724		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000392428	ENST00000361475		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000392428	ENST00000536701		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000392428	ENST00000536724		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000280562	ENST00000361475		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000280562	ENST00000536701		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000280562	ENST00000536724		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000542749	ENST00000361475		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000542749	ENST00000536701		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000542749	ENST00000536724		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000546049	ENST00000361475		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000546049	ENST00000536701		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000546049	ENST00000536724		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000451868	ENST00000361475		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000451868	ENST00000536701		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
intron-intron	ENST00000451868	ENST00000536724		ChiTaRS3.1			BG003279	PITPNM2	chr12	123589993	-	TGM2	chr20	36770753	-
3UTR-5UTR	ENST00000362512	ENST00000397086		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-5UTR	ENST00000362512	ENST00000320225		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-intron	ENST00000362512	ENST00000566458		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-intron	ENST00000362512	ENST00000566397		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-5UTR	ENST00000362512	ENST00000565678		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-intron	ENST00000362512	ENST00000561718		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-5UTR	ENST00000362512	ENST00000568631		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-5UTR	ENST00000362512	ENST00000569598		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-5UTR	ENST00000362512	ENST00000301730		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
3UTR-intron	ENST00000362512	ENST00000567147		ChiTaRS3.1			DA134109	RNU12	chr22	43011321	+	RNPS1	chr16	2314752	-
intron-intron	ENST00000391895	ENST00000548589		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391895	ENST00000552699		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391895	ENST00000267115		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391895	ENST00000549385		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391895	ENST00000423828		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391895	ENST00000395006		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391895	ENST00000547798		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-intron	ENST00000391894	ENST00000548589		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391894	ENST00000552699		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391894	ENST00000267115		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391894	ENST00000549385		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391894	ENST00000423828		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391894	ENST00000395006		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-3UTR	ENST00000391894	ENST00000547798		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-intron	ENST00000444842	ENST00000548589		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-3UTR	ENST00000444842	ENST00000552699		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-3UTR	ENST00000444842	ENST00000267115		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-3UTR	ENST00000444842	ENST00000549385		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-3UTR	ENST00000444842	ENST00000423828		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-3UTR	ENST00000444842	ENST00000395006		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
3UTR-3UTR	ENST00000444842	ENST00000547798		ChiTaRS3.1			CF129966	KCNK2	chr1	215408852	+	TMBIM6	chr12	50156706	+
intron-intron	ENST00000356663	ENST00000413834		ChiTaRS3.1			BP264249	TMEM259	chr19	1014394	-	ATP5J2-PTCD1	chr7	99056808	-
intron-intron	ENST00000356663	ENST00000437572		ChiTaRS3.1			BP264249	TMEM259	chr19	1014394	-	ATP5J2-PTCD1	chr7	99056808	-
intron-intron	ENST00000333175	ENST00000413834		ChiTaRS3.1			BP264249	TMEM259	chr19	1014394	-	ATP5J2-PTCD1	chr7	99056808	-
intron-intron	ENST00000333175	ENST00000437572		ChiTaRS3.1			BP264249	TMEM259	chr19	1014394	-	ATP5J2-PTCD1	chr7	99056808	-
5CDS-intron	ENST00000392524	ENST00000418539		ChiTaRS3.1			DR158276	HNRNPA3	chr2	178082550	+	BCYRN1	chrX	70517290	+
5CDS-intron	ENST00000411529	ENST00000418539		ChiTaRS3.1			DR158276	HNRNPA3	chr2	178082550	+	BCYRN1	chrX	70517290	+
5CDS-intron	ENST00000435711	ENST00000418539		ChiTaRS3.1			DR158276	HNRNPA3	chr2	178082550	+	BCYRN1	chrX	70517290	+
intron-3UTR	ENST00000559763	ENST00000339438		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000559763	ENST00000438362		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000559763	ENST00000358528		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000559763	ENST00000261443		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000559763	ENST00000530886		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000559763	ENST00000369530		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-5UTR	ENST00000559763	ENST00000483407		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000559763	ENST00000534699		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000339438		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000438362		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000358528		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000261443		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000530886		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000369530		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-5UTR	ENST00000330964	ENST00000483407		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000330964	ENST00000534699		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000339438		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000438362		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000358528		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000261443		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000530886		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000369530		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-5UTR	ENST00000462430	ENST00000483407		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000462430	ENST00000534699		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000339438		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000438362		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000358528		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000261443		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000530886		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000369530		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-5UTR	ENST00000455271	ENST00000483407		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000455271	ENST00000534699		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000339438		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000438362		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000358528		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000261443		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000530886		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000369530		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-5UTR	ENST00000411926	ENST00000483407		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000411926	ENST00000534699		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000339438		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000438362		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000358528		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000261443		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000530886		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000369530		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-5UTR	ENST00000439025	ENST00000483407		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3UTR	ENST00000439025	ENST00000534699		ChiTaRS3.1			BF978658	RPS27L	chr15	63448638	-	CSDE1	chr1	115260758	-
intron-3CDS	ENST00000421182	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000357867	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000323926	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000336916	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000354785	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000357009	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000346544	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000345488	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000359671	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000446046	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000443816	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000432072	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000356005	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000490833	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
intron-3CDS	ENST00000426059	ENST00000343267		ChiTaRS3.1			BG926842	FN1	chr2	216269267	-	APOD	chr3	195306296	-
In-frame	ENST00000238788	ENST00000338146		ChiTaRS3.1			BU838269	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
In-frame	ENST00000404032	ENST00000338146		ChiTaRS3.1			BU838269	TMEM214	chr2	27260524	+	SPRYD4	chr12	56862383	+
intron-5UTR	ENST00000558170	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000409487	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000303660	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000539609	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000493689	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000470879	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000465070	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-5UTR	ENST00000462355	ENST00000282541		ChiTaRS3.1			DA778688	ZEB2	chr2	145274917	-	GPD1L	chr3	32148134	+
intron-3CDS	ENST00000452313	ENST00000536719		ChiTaRS3.1			BI032727	NPIPB7	chr16	28845944	+	TSG101	chr11	18528470	-
intron-3CDS	ENST00000452313	ENST00000251968		ChiTaRS3.1			BI032727	NPIPB7	chr16	28845944	+	TSG101	chr11	18528470	-
intron-3CDS	ENST00000452313	ENST00000357193		ChiTaRS3.1			BI032727	NPIPB7	chr16	28845944	+	TSG101	chr11	18528470	-
intron-5UTR	ENST00000452313	ENST00000543087		ChiTaRS3.1			BI032727	NPIPB7	chr16	28845944	+	TSG101	chr11	18528470	-
intron-3CDS	ENST00000542601	ENST00000393078		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000542601	ENST00000485588		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000542601	ENST00000393080		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000542601	ENST00000467132		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000542601	ENST00000482740		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-3CDS	ENST00000222271	ENST00000393078		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000222271	ENST00000485588		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000222271	ENST00000393080		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000222271	ENST00000467132		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000222271	ENST00000482740		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-3CDS	ENST00000425807	ENST00000393078		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000425807	ENST00000485588		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000425807	ENST00000393080		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000425807	ENST00000467132		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
intron-intron	ENST00000425807	ENST00000482740		ChiTaRS3.1			BQ181152	COMP	chr19	18893982	+	SERPINA3	chr14	95090124	-
In-frame	ENST00000335221	ENST00000389467		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000335221	ENST00000446231		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000335221	ENST00000565224		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000335221	ENST00000567737		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000321892	ENST00000389467		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000321892	ENST00000446231		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000321892	ENST00000565224		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000321892	ENST00000567737		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000306378	ENST00000389467		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000306378	ENST00000446231		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000306378	ENST00000565224		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000306378	ENST00000567737		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000424123	ENST00000389467		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
In-frame	ENST00000424123	ENST00000446231		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000424123	ENST00000565224		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
5CDS-intron	ENST00000424123	ENST00000567737		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
intron-3CDS	ENST00000577770	ENST00000389467		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
intron-3CDS	ENST00000577770	ENST00000446231		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
intron-intron	ENST00000577770	ENST00000565224		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
intron-intron	ENST00000577770	ENST00000567737		ChiTaRS3.1			DB219627	BPTF	chr17	65944305	+	SMG1	chr16	18826827	-
intron-3UTR	ENST00000337018	ENST00000526148		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000337018	ENST00000525681		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000337018	ENST00000339995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000337018	ENST00000396525		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-intron	ENST00000337018	ENST00000525995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000452918	ENST00000526148		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000452918	ENST00000525681		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000452918	ENST00000339995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000452918	ENST00000396525		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-intron	ENST00000452918	ENST00000525995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000601879	ENST00000526148		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000601879	ENST00000525681		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000601879	ENST00000339995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000601879	ENST00000396525		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-intron	ENST00000601879	ENST00000525995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000600377	ENST00000526148		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000600377	ENST00000525681		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000600377	ENST00000339995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000600377	ENST00000396525		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-intron	ENST00000600377	ENST00000525995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000456085	ENST00000526148		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000456085	ENST00000525681		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000456085	ENST00000339995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000456085	ENST00000396525		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-intron	ENST00000456085	ENST00000525995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000598202	ENST00000526148		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000598202	ENST00000525681		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000598202	ENST00000339995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-3UTR	ENST00000598202	ENST00000396525		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
intron-intron	ENST00000598202	ENST00000525995		ChiTaRS3.1			BP393537	SUGP2	chr19	19101757	-	EIF4G2	chr11	10819047	-
3UTR-intron	ENST00000505658	ENST00000600729		ChiTaRS3.1			DB500866	LUC7L3	chr17	48828940	+	MIA-RAB4B	chr19	41284182	+
3UTR-intron	ENST00000393227	ENST00000600729		ChiTaRS3.1			DB500866	LUC7L3	chr17	48828940	+	MIA-RAB4B	chr19	41284182	+
intron-intron	ENST00000311571	ENST00000600729		ChiTaRS3.1			DB500866	LUC7L3	chr17	48828940	+	MIA-RAB4B	chr19	41284182	+
intron-intron	ENST00000240304	ENST00000600729		ChiTaRS3.1			DB500866	LUC7L3	chr17	48828940	+	MIA-RAB4B	chr19	41284182	+
intron-intron	ENST00000544170	ENST00000600729		ChiTaRS3.1			DB500866	LUC7L3	chr17	48828940	+	MIA-RAB4B	chr19	41284182	+
intron-intron	ENST00000503798	ENST00000600729		ChiTaRS3.1			DB500866	LUC7L3	chr17	48828940	+	MIA-RAB4B	chr19	41284182	+
5CDS-5UTR	ENST00000246551	ENST00000394132		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000246551	ENST00000394136		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000246551	ENST00000558613		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000246551	ENST00000262074		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-intron	ENST00000246551	ENST00000558663		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000246551	ENST00000394135		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000246551	ENST00000394130		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-intron	ENST00000246551	ENST00000394129		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-intron	ENST00000246551	ENST00000490671		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000437550	ENST00000394132		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000437550	ENST00000394136		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000437550	ENST00000558613		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000437550	ENST00000262074		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-intron	ENST00000437550	ENST00000558663		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000437550	ENST00000394135		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-5UTR	ENST00000437550	ENST00000394130		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-intron	ENST00000437550	ENST00000394129		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
5CDS-intron	ENST00000437550	ENST00000490671		ChiTaRS3.1			BM918971	HCST	chr19	36394763	+	TTC23	chr15	99789469	-
3UTR-3UTR	ENST00000532456	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
3UTR-5UTR	ENST00000532456	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
3UTR-5UTR	ENST00000532456	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5UTR-3UTR	ENST00000539648	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5UTR-5UTR	ENST00000539648	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5UTR-5UTR	ENST00000539648	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-3UTR	ENST00000528499	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000528499	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000528499	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-3UTR	ENST00000263574	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000263574	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000263574	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-3UTR	ENST00000345598	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000345598	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000345598	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-3UTR	ENST00000338167	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000338167	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
5CDS-5UTR	ENST00000338167	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
intron-3UTR	ENST00000278756	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
intron-5UTR	ENST00000278756	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
intron-5UTR	ENST00000278756	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
intron-3UTR	ENST00000543137	ENST00000530985		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
intron-5UTR	ENST00000543137	ENST00000343678		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
intron-5UTR	ENST00000543137	ENST00000278903		ChiTaRS3.1			DB031430	APLP2	chr11	129939977	+	EI24	chr11	125442352	+
Frame-shit	ENST00000486975	ENST00000258111		ChiTaRS3.1			BP212615	CLDN11	chr3	170141026	+	KCNMB4	chr12	70824368	+
Frame-shit	ENST00000451576	ENST00000258111		ChiTaRS3.1			BP212615	CLDN11	chr3	170141026	+	KCNMB4	chr12	70824368	+
Frame-shit	ENST00000064724	ENST00000258111		ChiTaRS3.1			BP212615	CLDN11	chr3	170141026	+	KCNMB4	chr12	70824368	+
3UTR-3CDS	ENST00000489485	ENST00000258111		ChiTaRS3.1			BP212615	CLDN11	chr3	170141026	+	KCNMB4	chr12	70824368	+
intron-5UTR	ENST00000541285	ENST00000229239		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-5UTR	ENST00000541285	ENST00000396856		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-5UTR	ENST00000541285	ENST00000396861		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-intron	ENST00000541285	ENST00000396859		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-intron	ENST00000541285	ENST00000396858		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-5UTR	ENST00000399138	ENST00000229239		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-5UTR	ENST00000399138	ENST00000396856		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-5UTR	ENST00000399138	ENST00000396861		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-intron	ENST00000399138	ENST00000396859		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-intron	ENST00000399138	ENST00000396858		ChiTaRS3.1			U34995	ALKBH5	chr17	18087143	-	GAPDH	chr12	6643694	+
intron-3CDS	ENST00000291900	ENST00000295598		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-3CDS	ENST00000291900	ENST00000537345		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-3CDS	ENST00000291900	ENST00000369496		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-intron	ENST00000291900	ENST00000491156		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-3CDS	ENST00000494461	ENST00000295598		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-3CDS	ENST00000494461	ENST00000537345		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-3CDS	ENST00000494461	ENST00000369496		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
intron-intron	ENST00000494461	ENST00000491156		ChiTaRS3.1			BU845840	ZER1	chr9	131512922	-	ATP1A1	chr1	116940578	+
5CDS-5UTR	ENST00000378961	ENST00000369887		ChiTaRS3.1			DA012276	CHGB	chr20	5904341	+	CYP17A1	chr10	104597170	-
5CDS-5UTR	ENST00000378961	ENST00000489268		ChiTaRS3.1			DA012276	CHGB	chr20	5904341	+	CYP17A1	chr10	104597170	-
intron-5UTR	ENST00000488832	ENST00000369887		ChiTaRS3.1			DA012276	CHGB	chr20	5904341	+	CYP17A1	chr10	104597170	-
intron-5UTR	ENST00000488832	ENST00000489268		ChiTaRS3.1			DA012276	CHGB	chr20	5904341	+	CYP17A1	chr10	104597170	-
3UTR-intron	ENST00000261267	ENST00000300184		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
3UTR-intron	ENST00000261267	ENST00000358246		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
3UTR-intron	ENST00000261267	ENST00000530234		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
3UTR-intron	ENST00000261267	ENST00000534016		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000549690	ENST00000300184		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000549690	ENST00000358246		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000549690	ENST00000530234		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000549690	ENST00000534016		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000548839	ENST00000300184		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000548839	ENST00000358246		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000548839	ENST00000530234		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
intron-intron	ENST00000548839	ENST00000534016		ChiTaRS3.1			CA310404	LYZ	chr12	69747534	-	MS4A7	chr11	60160259	-
3UTR-intron	ENST00000254616	ENST00000554659		ChiTaRS3.1			AW137120	TIMM10B	chr11	6505605	-	VTI1B	chr14	68119802	+
intron-intron	ENST00000530751	ENST00000554659		ChiTaRS3.1			AW137120	TIMM10B	chr11	6505605	-	VTI1B	chr14	68119802	+
intron-intron	ENST00000472836	ENST00000554659		ChiTaRS3.1			AW137120	TIMM10B	chr11	6505605	-	VTI1B	chr14	68119802	+
intron-intron	ENST00000424085	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000424085	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000424085	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000257075	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000257075	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000257075	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373747	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373747	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373747	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000426105	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000426105	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000426105	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000440538	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000440538	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000440538	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373741	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373741	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373741	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000423018	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000423018	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000423018	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373742	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373742	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000373742	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000490546	ENST00000497753		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000490546	ENST00000310256		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000490546	ENST00000366658		ChiTaRS3.1			CD723230	PUM1	chr1	31480584	-	ARV1	chr1	231134946	+
intron-intron	ENST00000437600	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000437600	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000437600	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000437600	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292538	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292538	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292538	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292538	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000393824	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000393824	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000393824	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000393824	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000547394	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000547394	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000547394	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000547394	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000360264	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000360264	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000360264	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000360264	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000425244	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000425244	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000425244	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000425244	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292535	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292535	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292535	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000292535	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000549414	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000549414	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000549414	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000549414	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000556210	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000556210	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000556210	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000556210	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000550008	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000550008	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000550008	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000550008	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000546411	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000546411	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000546411	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000546411	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000560541	ENST00000180173		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000560541	ENST00000521857		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000560541	ENST00000398099		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-intron	ENST00000560541	ENST00000523571		ChiTaRS3.1			AI732560	CUX1	chr7	101525434	-	MTMR7	chr8	17262344	-
intron-3CDS	ENST00000421515	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000421515	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000421515	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000388759	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000388759	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000388759	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000443659	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000443659	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000443659	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000425478	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000425478	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000425478	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000437230	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000437230	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000437230	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000412028	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000412028	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000412028	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000415901	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000415901	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000415901	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-3CDS	ENST00000416026	ENST00000368830		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000416026	ENST00000467306		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-5UTR	ENST00000416026	ENST00000368829		ChiTaRS3.1			CA748650	NKIRAS1	chr3	23960867	-	MRPL9	chr1	151732578	+
intron-intron	ENST00000369754	ENST00000263734		ChiTaRS3.1			BF197110	FAM46A	chr6	82462384	+	EPAS1	chr2	46601474	+
intron-intron	ENST00000369754	ENST00000467888		ChiTaRS3.1			BF197110	FAM46A	chr6	82462384	+	EPAS1	chr2	46601474	+
intron-intron	ENST00000320172	ENST00000263734		ChiTaRS3.1			BF197110	FAM46A	chr6	82462384	+	EPAS1	chr2	46601474	+
intron-intron	ENST00000320172	ENST00000467888		ChiTaRS3.1			BF197110	FAM46A	chr6	82462384	+	EPAS1	chr2	46601474	+
intron-intron	ENST00000369756	ENST00000263734		ChiTaRS3.1			BF197110	FAM46A	chr6	82462384	+	EPAS1	chr2	46601474	+
intron-intron	ENST00000369756	ENST00000467888		ChiTaRS3.1			BF197110	FAM46A	chr6	82462384	+	EPAS1	chr2	46601474	+
intron-3UTR	ENST00000366835	ENST00000261267		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000366835	ENST00000549690		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000366835	ENST00000548839		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-3UTR	ENST00000474478	ENST00000261267		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000474478	ENST00000549690		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000474478	ENST00000548839		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-3UTR	ENST00000537914	ENST00000261267		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000537914	ENST00000549690		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000537914	ENST00000548839		ChiTaRS3.1			AK093860	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-3UTR	ENST00000367249	ENST00000367249		ChiTaRS3.1			BU676300	CYB5R1	chr1	202931198	+	CYB5R1	chr1	202931258	-
intron-5UTR	ENST00000367249	ENST00000497655		ChiTaRS3.1			BU676300	CYB5R1	chr1	202931198	+	CYB5R1	chr1	202931258	-
intron-3UTR	ENST00000497655	ENST00000367249		ChiTaRS3.1			BU676300	CYB5R1	chr1	202931198	+	CYB5R1	chr1	202931258	-
intron-5UTR	ENST00000497655	ENST00000497655		ChiTaRS3.1			BU676300	CYB5R1	chr1	202931198	+	CYB5R1	chr1	202931258	-
intron-3CDS	ENST00000486890	ENST00000371600		ChiTaRS3.1			CN310500	MINOS1	chr1	19934929	+	NPDC1	chr9	139937445	-
intron-3CDS	ENST00000486890	ENST00000371601		ChiTaRS3.1			CN310500	MINOS1	chr1	19934929	+	NPDC1	chr9	139937445	-
intron-5UTR	ENST00000486890	ENST00000488145		ChiTaRS3.1			CN310500	MINOS1	chr1	19934929	+	NPDC1	chr9	139937445	-
intron-3CDS	ENST00000322753	ENST00000371600		ChiTaRS3.1			CN310500	MINOS1	chr1	19934929	+	NPDC1	chr9	139937445	-
intron-3CDS	ENST00000322753	ENST00000371601		ChiTaRS3.1			CN310500	MINOS1	chr1	19934929	+	NPDC1	chr9	139937445	-
intron-5UTR	ENST00000322753	ENST00000488145		ChiTaRS3.1			CN310500	MINOS1	chr1	19934929	+	NPDC1	chr9	139937445	-
intron-3UTR	ENST00000441037	ENST00000265909		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000534726		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000545537		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000426933		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000533318		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000530356		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000539184		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000528555		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000533214		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000421325	ENST00000265909		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000534726		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000545537		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000426933		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000533318		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000530356		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000539184		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000528555		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000533214		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000389298	ENST00000265909		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000534726		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000545537		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000426933		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000533318		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000530356		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000539184		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000528555		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000533214		ChiTaRS3.1			AW387310	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000217909	ENST00000217909		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-intron	ENST00000217909	ENST00000336249		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-3UTR	ENST00000217909	ENST00000488158		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-3UTR	ENST00000336249	ENST00000217909		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-intron	ENST00000336249	ENST00000336249		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-3UTR	ENST00000336249	ENST00000488158		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-3UTR	ENST00000488158	ENST00000217909		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-intron	ENST00000488158	ENST00000336249		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-3UTR	ENST00000488158	ENST00000488158		ChiTaRS3.1			AI631460	SLC25A43	chrX	118551383	-	SLC25A43	chrX	118587510	-
intron-intron	ENST00000310169	ENST00000417647		ChiTaRS3.1			BM983660	CHRNA9	chr4	40349601	+	IK	chr5	140042063	-
intron-intron	ENST00000310169	ENST00000523672		ChiTaRS3.1			BM983660	CHRNA9	chr4	40349601	+	IK	chr5	140042063	-
intron-intron	ENST00000502377	ENST00000417647		ChiTaRS3.1			BM983660	CHRNA9	chr4	40349601	+	IK	chr5	140042063	-
intron-intron	ENST00000502377	ENST00000523672		ChiTaRS3.1			BM983660	CHRNA9	chr4	40349601	+	IK	chr5	140042063	-
intron-3CDS	ENST00000360319	ENST00000360319		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000360319	ENST00000422373		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000360319	ENST00000369850		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000360319	ENST00000369856		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000360319	ENST00000344736		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-5UTR	ENST00000360319	ENST00000498491		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000422373	ENST00000360319		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000422373	ENST00000422373		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000422373	ENST00000369850		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000422373	ENST00000369856		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000422373	ENST00000344736		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-5UTR	ENST00000422373	ENST00000498491		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369850	ENST00000360319		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369850	ENST00000422373		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369850	ENST00000369850		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369850	ENST00000369856		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369850	ENST00000344736		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-5UTR	ENST00000369850	ENST00000498491		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369856	ENST00000369856		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000369856	ENST00000344736		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-5UTR	ENST00000369856	ENST00000498491		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000344736	ENST00000360319		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000344736	ENST00000422373		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000344736	ENST00000369850		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000344736	ENST00000369856		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000344736	ENST00000344736		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-5UTR	ENST00000344736	ENST00000498491		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000498491	ENST00000369856		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-3CDS	ENST00000498491	ENST00000344736		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
intron-5UTR	ENST00000498491	ENST00000498491		ChiTaRS3.1			BI013450	FLNA	chrX	153581498	+	FLNA	chrX	153579403	-
Frame-shit	ENST00000232458	ENST00000232458		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000232458	ENST00000392692		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000232458	ENST00000427830		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000232458	ENST00000417960		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000232458	ENST00000441497		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000232458	ENST00000540509		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000392692	ENST00000232458		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000392692	ENST00000392692		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000392692	ENST00000427830		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000392692	ENST00000417960		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000392692	ENST00000441497		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000392692	ENST00000540509		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000427830	ENST00000232458		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000427830	ENST00000392692		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000427830	ENST00000427830		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000427830	ENST00000417960		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000427830	ENST00000441497		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000427830	ENST00000540509		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000417960	ENST00000232458		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000417960	ENST00000392692		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000417960	ENST00000427830		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000417960	ENST00000417960		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000417960	ENST00000441497		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000417960	ENST00000540509		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000441497	ENST00000232458		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000441497	ENST00000392692		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000441497	ENST00000427830		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000441497	ENST00000417960		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000441497	ENST00000441497		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000441497	ENST00000540509		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000540509	ENST00000232458		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000540509	ENST00000392692		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000540509	ENST00000427830		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000540509	ENST00000417960		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000540509	ENST00000441497		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
Frame-shit	ENST00000540509	ENST00000540509		ChiTaRS3.1			BE080860	ECT2	chr3	172504366	+	ECT2	chr3	172479400	+
5UTR-5UTR	ENST00000518164	ENST00000414318		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000518164	ENST00000253692		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000518164	ENST00000429383		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000518164	ENST00000446818		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000518164	ENST00000429924		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000521291	ENST00000414318		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000521291	ENST00000253692		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000521291	ENST00000429383		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000521291	ENST00000446818		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000521291	ENST00000429924		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000396070	ENST00000414318		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000396070	ENST00000253692		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000396070	ENST00000429383		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000396070	ENST00000446818		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000396070	ENST00000429924		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000287038	ENST00000414318		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000287038	ENST00000253692		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000287038	ENST00000429383		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000287038	ENST00000446818		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5CDS-5UTR	ENST00000287038	ENST00000429924		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000523172	ENST00000414318		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000523172	ENST00000253692		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000523172	ENST00000429383		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000523172	ENST00000446818		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
5UTR-5UTR	ENST00000523172	ENST00000429924		ChiTaRS3.1			DB125840	RPL30	chr8	99057575	-	TBC1D5	chr3	17349627	-
intron-intron	ENST00000354960	ENST00000405015		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000354960	ENST00000431489		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000354960	ENST00000354487		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000354960	ENST00000263991		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000354960	ENST00000405289		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000354960	ENST00000496857		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000394439	ENST00000405015		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000394439	ENST00000431489		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000394439	ENST00000354487		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000394439	ENST00000263991		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000394439	ENST00000405289		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000394439	ENST00000496857		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000264805	ENST00000405015		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000264805	ENST00000431489		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000264805	ENST00000354487		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000264805	ENST00000263991		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000264805	ENST00000405289		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000264805	ENST00000496857		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000512739	ENST00000405015		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000512739	ENST00000431489		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000512739	ENST00000354487		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000512739	ENST00000263991		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000512739	ENST00000405289		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-intron	ENST00000512739	ENST00000496857		ChiTaRS3.1			AW102720	PDE5A	chr4	120420968	-	EHBP1	chr2	63251232	-
intron-3UTR	ENST00000560606	ENST00000560606		ChiTaRS3.1			BF855340	RBPMS2	chr15	65032918	-	RBPMS2	chr15	65032939	+
intron-3UTR	ENST00000560606	ENST00000300069		ChiTaRS3.1			BF855340	RBPMS2	chr15	65032918	-	RBPMS2	chr15	65032939	+
intron-3UTR	ENST00000300069	ENST00000560606		ChiTaRS3.1			BF855340	RBPMS2	chr15	65032918	-	RBPMS2	chr15	65032939	+
intron-3UTR	ENST00000300069	ENST00000300069		ChiTaRS3.1			BF855340	RBPMS2	chr15	65032918	-	RBPMS2	chr15	65032939	+
intron-3UTR	ENST00000260502	ENST00000260502		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000260502	ENST00000370244		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000260502	ENST00000370243		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000260502	ENST00000370247		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000260502	ENST00000539242		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000260502	ENST00000466632		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370244	ENST00000260502		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370244	ENST00000370244		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370244	ENST00000370243		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370244	ENST00000370247		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370244	ENST00000539242		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000370244	ENST00000466632		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370243	ENST00000260502		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370243	ENST00000370244		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370243	ENST00000370243		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370243	ENST00000370247		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370243	ENST00000539242		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000370243	ENST00000466632		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370247	ENST00000260502		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370247	ENST00000370244		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370247	ENST00000370243		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370247	ENST00000370247		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000370247	ENST00000539242		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000370247	ENST00000466632		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000539242	ENST00000260502		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000539242	ENST00000370244		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000539242	ENST00000370243		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000539242	ENST00000370247		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000539242	ENST00000539242		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000539242	ENST00000466632		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000466632	ENST00000260502		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000466632	ENST00000370244		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000466632	ENST00000370243		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000466632	ENST00000370247		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-3UTR	ENST00000466632	ENST00000539242		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000466632	ENST00000466632		ChiTaRS3.1			CA311930	BCAR3	chr1	94027583	+	BCAR3	chr1	94027783	-
intron-intron	ENST00000421890	ENST00000253925		ChiTaRS3.1			BE221750	ZNF815P	chr7	5893736	-	PPFIA1	chr11	70244204	+
intron-intron	ENST00000421890	ENST00000389547		ChiTaRS3.1			BE221750	ZNF815P	chr7	5893736	-	PPFIA1	chr11	70244204	+
intron-intron	ENST00000421890	ENST00000530548		ChiTaRS3.1			BE221750	ZNF815P	chr7	5893736	-	PPFIA1	chr11	70244204	+
3UTR-3UTR	ENST00000228506	ENST00000228506		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
3UTR-intron	ENST00000228506	ENST00000412616		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
3UTR-intron	ENST00000228506	ENST00000535413		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-3UTR	ENST00000412616	ENST00000228506		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-intron	ENST00000412616	ENST00000412616		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-intron	ENST00000412616	ENST00000535413		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-3UTR	ENST00000535413	ENST00000228506		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-intron	ENST00000535413	ENST00000412616		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-intron	ENST00000535413	ENST00000535413		ChiTaRS3.1			AA243990	MLEC	chr12	121139529	+	MLEC	chr12	121139364	-
intron-intron	ENST00000571589	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000571589	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000574045	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000318282	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000572567	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000341243	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000575537	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000393799		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000530427		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000393800		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000534534		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000524845		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000265637		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000524904		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000393801		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000265636		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000529710		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-intron	ENST00000573051	ENST00000527403		ChiTaRS3.1			BI055250	MKL2	chr16	14273089	+	PPP6R3	chr11	68334215	+
intron-5UTR	ENST00000246914	ENST00000444837		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000246914	ENST00000569500		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000246914	ENST00000379811		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000246914	ENST00000568675		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000587705	ENST00000444837		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000587705	ENST00000569500		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000587705	ENST00000379811		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-5UTR	ENST00000587705	ENST00000568675		ChiTaRS3.1			H91370	WNK4	chr17	40939214	-	MT1G	chr16	56701936	-
intron-intron	ENST00000258526	ENST00000344204		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000258526	ENST00000537187		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000258526	ENST00000509967		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000258526	ENST00000515710		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000258526	ENST00000344135		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000547057	ENST00000344204		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000547057	ENST00000537187		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000547057	ENST00000509967		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000547057	ENST00000515710		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000547057	ENST00000344135		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000551495	ENST00000344204		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000551495	ENST00000537187		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000551495	ENST00000509967		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000551495	ENST00000515710		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000551495	ENST00000344135		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000545312	ENST00000344204		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000545312	ENST00000537187		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000545312	ENST00000509967		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000545312	ENST00000515710		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
intron-intron	ENST00000545312	ENST00000344135		ChiTaRS3.1			AW614030	PLXNC1	chr12	94671753	+	TRIO	chr5	14361620	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BG771150	MALAT1	chr11	65267577	+	MALAT1	chr11	65266791	+
intron-intron	ENST00000280979	ENST00000280979		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000280979	ENST00000557354		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000280979	ENST00000557272		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000280979	ENST00000554449		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000280979		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000557354		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000557272		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000554449		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000280979		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000557354		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000557272		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000554449		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000280979		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000557354		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000557272		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000554449		ChiTaRS3.1			AA525900	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
3UTR-3UTR	ENST00000334512	ENST00000334512		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
3UTR-intron	ENST00000334512	ENST00000478357		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
3UTR-intron	ENST00000334512	ENST00000446377		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-3UTR	ENST00000478357	ENST00000334512		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-intron	ENST00000478357	ENST00000478357		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-intron	ENST00000478357	ENST00000446377		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-3UTR	ENST00000446377	ENST00000334512		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-intron	ENST00000446377	ENST00000478357		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-intron	ENST00000446377	ENST00000446377		ChiTaRS3.1			BQ428140	ZMIZ1	chr10	81074398	-	ZMIZ1	chr10	81074440	+
intron-5UTR	ENST00000266087	ENST00000470450		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000266087	ENST00000286788		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000266087	ENST00000542732		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000266087	ENST00000540844		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000382058	ENST00000470450		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000382058	ENST00000286788		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000382058	ENST00000542732		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000382058	ENST00000540844		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000397426	ENST00000470450		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000397426	ENST00000286788		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000397426	ENST00000542732		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000397426	ENST00000540844		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000465418	ENST00000470450		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000465418	ENST00000286788		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000465418	ENST00000542732		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-5UTR	ENST00000465418	ENST00000540844		ChiTaRS3.1			BG991440	FBXO7	chr22	32888763	-	CCT8	chr21	30433614	-
intron-3CDS	ENST00000394936	ENST00000394936		ChiTaRS3.1			BE176600	PSAP	chr10	73588681	+	PSAP	chr10	73587811	-
intron-3CDS	ENST00000394936	ENST00000394934		ChiTaRS3.1			BE176600	PSAP	chr10	73588681	+	PSAP	chr10	73587811	-
intron-3CDS	ENST00000394934	ENST00000394936		ChiTaRS3.1			BE176600	PSAP	chr10	73588681	+	PSAP	chr10	73587811	-
intron-3CDS	ENST00000394934	ENST00000394934		ChiTaRS3.1			BE176600	PSAP	chr10	73588681	+	PSAP	chr10	73587811	-
intron-intron	ENST00000226725	ENST00000226725		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000226725	ENST00000514860		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000226725	ENST00000538127		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000226725	ENST00000421009		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000226725	ENST00000506761		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000226725	ENST00000509028		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000514860	ENST00000226725		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000514860	ENST00000514860		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000514860	ENST00000538127		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000514860	ENST00000421009		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000514860	ENST00000506761		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000514860	ENST00000509028		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000538127	ENST00000226725		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000538127	ENST00000514860		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000538127	ENST00000538127		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000538127	ENST00000421009		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000538127	ENST00000506761		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000538127	ENST00000509028		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000421009	ENST00000226725		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000421009	ENST00000514860		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000421009	ENST00000538127		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000421009	ENST00000421009		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000421009	ENST00000506761		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000421009	ENST00000509028		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000506761	ENST00000226725		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000506761	ENST00000514860		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000506761	ENST00000538127		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000506761	ENST00000421009		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000506761	ENST00000506761		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000506761	ENST00000509028		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000509028	ENST00000226725		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000509028	ENST00000514860		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000509028	ENST00000538127		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000509028	ENST00000421009		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000509028	ENST00000506761		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000509028	ENST00000509028		ChiTaRS3.1			N49280	KLHL2	chr9	21332074	+	KLHL2	chr9	21332308	-
intron-intron	ENST00000258796	ENST00000258796		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000258796	ENST00000407643		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000258796	ENST00000403167		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000258796	ENST00000477439		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000407643	ENST00000258796		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000407643	ENST00000407643		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000407643	ENST00000403167		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000407643	ENST00000477439		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000403167	ENST00000258796		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000403167	ENST00000407643		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000403167	ENST00000403167		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000403167	ENST00000477439		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000477439	ENST00000258796		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000477439	ENST00000407643		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000477439	ENST00000403167		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
intron-intron	ENST00000477439	ENST00000477439		ChiTaRS3.1			N36680	TTYH3	chr7	2681138	+	TTYH3	chr7	2680951	+
3UTR-3UTR	ENST00000371065	ENST00000368985		ChiTaRS3.1			CD364830	LEPROT	chr1	65901326	-	CTSS	chr1	150705381	+
3UTR-3UTR	ENST00000371065	ENST00000448301		ChiTaRS3.1			CD364830	LEPROT	chr1	65901326	-	CTSS	chr1	150705381	+
3UTR-intron	ENST00000371065	ENST00000480760		ChiTaRS3.1			CD364830	LEPROT	chr1	65901326	-	CTSS	chr1	150705381	+
intron-3UTR	ENST00000484243	ENST00000368985		ChiTaRS3.1			CD364830	LEPROT	chr1	65901326	-	CTSS	chr1	150705381	+
intron-3UTR	ENST00000484243	ENST00000448301		ChiTaRS3.1			CD364830	LEPROT	chr1	65901326	-	CTSS	chr1	150705381	+
intron-intron	ENST00000484243	ENST00000480760		ChiTaRS3.1			CD364830	LEPROT	chr1	65901326	-	CTSS	chr1	150705381	+
intron-intron	ENST00000404260	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000404260	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403625	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406374	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000406039	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000478569	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000490016	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000403666	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000405643	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000261569	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000404260		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000403625		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000406374		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000406039		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000478569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000490016		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000403666		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000405643		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000261569		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
intron-intron	ENST00000407621	ENST00000407621		ChiTaRS3.1			CB322010	MAST4	chr5	66353271	-	MAST4	chr5	66352995	+
5UTR-3UTR	ENST00000431388	ENST00000539605		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
5UTR-3UTR	ENST00000431388	ENST00000357997		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
5UTR-3UTR	ENST00000431388	ENST00000542282		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
5UTR-3UTR	ENST00000431388	ENST00000542657		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
5UTR-intron	ENST00000431388	ENST00000542374		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
5UTR-intron	ENST00000431388	ENST00000337516		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-3UTR	ENST00000573173	ENST00000539605		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-3UTR	ENST00000573173	ENST00000357997		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-3UTR	ENST00000573173	ENST00000542282		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-3UTR	ENST00000573173	ENST00000542657		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-intron	ENST00000573173	ENST00000542374		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-intron	ENST00000573173	ENST00000337516		ChiTaRS3.1			AI682370	C17orf89	chr17	79213125	-	ANKLE2	chr12	133303761	+
intron-3CDS	ENST00000377093	ENST00000336023		ChiTaRS3.1			AV718300	KIF1B	chr1	10401516	+	TUBA1B	chr12	49521774	-
intron-3CDS	ENST00000263934	ENST00000336023		ChiTaRS3.1			AV718300	KIF1B	chr1	10401516	+	TUBA1B	chr12	49521774	-
intron-3CDS	ENST00000377086	ENST00000336023		ChiTaRS3.1			AV718300	KIF1B	chr1	10401516	+	TUBA1B	chr12	49521774	-
intron-3CDS	ENST00000377083	ENST00000336023		ChiTaRS3.1			AV718300	KIF1B	chr1	10401516	+	TUBA1B	chr12	49521774	-
intron-3CDS	ENST00000377081	ENST00000336023		ChiTaRS3.1			AV718300	KIF1B	chr1	10401516	+	TUBA1B	chr12	49521774	-
intron-3CDS	ENST00000465635	ENST00000336023		ChiTaRS3.1			AV718300	KIF1B	chr1	10401516	+	TUBA1B	chr12	49521774	-
intron-intron	ENST00000454300	ENST00000313334		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000489308		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000472944		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000484036		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000533836		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000313334		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000489308		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000472944		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000484036		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000533836		ChiTaRS3.1			AA729380	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
5CDS-3UTR	ENST00000369797	ENST00000296137		ChiTaRS3.1			AI924910	PDCD11	chr10	105200143	-	FYCO1	chr3	45962232	+
5CDS-intron	ENST00000369797	ENST00000535325		ChiTaRS3.1			AI924910	PDCD11	chr10	105200143	-	FYCO1	chr3	45962232	+
5CDS-intron	ENST00000369797	ENST00000438446		ChiTaRS3.1			AI924910	PDCD11	chr10	105200143	-	FYCO1	chr3	45962232	+
intron-3UTR	ENST00000490787	ENST00000296137		ChiTaRS3.1			AI924910	PDCD11	chr10	105200143	-	FYCO1	chr3	45962232	+
intron-intron	ENST00000490787	ENST00000535325		ChiTaRS3.1			AI924910	PDCD11	chr10	105200143	-	FYCO1	chr3	45962232	+
intron-intron	ENST00000490787	ENST00000438446		ChiTaRS3.1			AI924910	PDCD11	chr10	105200143	-	FYCO1	chr3	45962232	+
intron-3CDS	ENST00000241261	ENST00000241261		ChiTaRS3.1			BU674610	TNFSF10	chr3	172224429	+	TNFSF10	chr3	172224582	-
intron-3UTR	ENST00000241261	ENST00000420541		ChiTaRS3.1			BU674610	TNFSF10	chr3	172224429	+	TNFSF10	chr3	172224582	-
intron-3CDS	ENST00000420541	ENST00000241261		ChiTaRS3.1			BU674610	TNFSF10	chr3	172224429	+	TNFSF10	chr3	172224582	-
intron-3UTR	ENST00000420541	ENST00000420541		ChiTaRS3.1			BU674610	TNFSF10	chr3	172224429	+	TNFSF10	chr3	172224582	-
intron-3UTR	ENST00000355097	ENST00000409790		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-intron	ENST00000355097	ENST00000409552		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-intron	ENST00000355097	ENST00000465491		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-3UTR	ENST00000355097	ENST00000381822		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-3UTR	ENST00000460614	ENST00000409790		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-intron	ENST00000460614	ENST00000409552		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-intron	ENST00000460614	ENST00000465491		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-3UTR	ENST00000460614	ENST00000381822		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-3UTR	ENST00000312665	ENST00000409790		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-intron	ENST00000312665	ENST00000409552		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-intron	ENST00000312665	ENST00000465491		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-3UTR	ENST00000312665	ENST00000381822		ChiTaRS3.1			BG958300	ENTPD2	chr9	139943074	+	CLEC16A	chr16	11273707	-
intron-5UTR	ENST00000377403	ENST00000571669		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-3UTR	ENST00000377403	ENST00000263092		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-intron	ENST00000377403	ENST00000538844		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-5UTR	ENST00000602477	ENST00000571669		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-3UTR	ENST00000602477	ENST00000263092		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-intron	ENST00000602477	ENST00000538844		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-5UTR	ENST00000495451	ENST00000571669		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-3UTR	ENST00000495451	ENST00000263092		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-intron	ENST00000495451	ENST00000538844		ChiTaRS3.1			BC047770	H6PD	chr1	9295721	+	METTL16	chr17	2320444	-
intron-3CDS	ENST00000500597	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000500597	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000500597	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000500597	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000500597	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000407977	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000407977	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000407977	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000407977	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000407977	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000583753	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000583753	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000583753	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000583753	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000583753	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000584437	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000584437	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000584437	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000584437	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000584437	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000577716	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000577716	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000577716	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000577716	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000577716	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000581868	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000581868	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000581868	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000581868	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000581868	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000577625	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000577625	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000577625	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000577625	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000577625	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000580014	ENST00000383202		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000580014	ENST00000236698		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000580014	ENST00000434713		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-5UTR	ENST00000580014	ENST00000480733		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-intron	ENST00000580014	ENST00000536929		ChiTaRS3.1			Z75330	RNF43	chr17	56480228	+	STAG1	chr3	136471209	-
intron-3CDS	ENST00000236137	ENST00000253039		ChiTaRS3.1			BE177610	SLC19A2	chr1	169434644	+	EIF2S3	chrX	24086202	+
intron-intron	ENST00000236137	ENST00000460032		ChiTaRS3.1			BE177610	SLC19A2	chr1	169434644	+	EIF2S3	chrX	24086202	+
intron-3CDS	ENST00000367804	ENST00000253039		ChiTaRS3.1			BE177610	SLC19A2	chr1	169434644	+	EIF2S3	chrX	24086202	+
intron-intron	ENST00000367804	ENST00000460032		ChiTaRS3.1			BE177610	SLC19A2	chr1	169434644	+	EIF2S3	chrX	24086202	+
3UTR-3CDS	ENST00000366930	ENST00000269141		ChiTaRS3.1			BE767210	TGFB2	chr1	218616382	-	CDH2	chr18	25543486	-
3UTR-3CDS	ENST00000366930	ENST00000399380		ChiTaRS3.1			BE767210	TGFB2	chr1	218616382	-	CDH2	chr18	25543486	-
3UTR-3CDS	ENST00000366929	ENST00000269141		ChiTaRS3.1			BE767210	TGFB2	chr1	218616382	-	CDH2	chr18	25543486	-
3UTR-3CDS	ENST00000366929	ENST00000399380		ChiTaRS3.1			BE767210	TGFB2	chr1	218616382	-	CDH2	chr18	25543486	-
intron-3CDS	ENST00000479322	ENST00000269141		ChiTaRS3.1			BE767210	TGFB2	chr1	218616382	-	CDH2	chr18	25543486	-
intron-3CDS	ENST00000479322	ENST00000399380		ChiTaRS3.1			BE767210	TGFB2	chr1	218616382	-	CDH2	chr18	25543486	-
intron-intron	ENST00000345506	ENST00000406870		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000345506	ENST00000232014		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000345506	ENST00000450123		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000345506	ENST00000496823		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000590949	ENST00000406870		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000590949	ENST00000232014		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000590949	ENST00000450123		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000590949	ENST00000496823		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000546010	ENST00000406870		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000546010	ENST00000232014		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000546010	ENST00000450123		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000546010	ENST00000496823		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000452307	ENST00000406870		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000452307	ENST00000232014		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000452307	ENST00000450123		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000452307	ENST00000496823		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000588868	ENST00000406870		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000588868	ENST00000232014		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000588868	ENST00000450123		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000588868	ENST00000496823		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000587646	ENST00000406870		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000587646	ENST00000232014		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000587646	ENST00000450123		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
intron-intron	ENST00000587646	ENST00000496823		ChiTaRS3.1			AJ557814	STAT5A	chr17	40456686	+	BCL6	chr3	187461805	-
3UTR-3UTR	ENST00000264380	ENST00000264380		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
3UTR-intron	ENST00000264380	ENST00000392202		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
3UTR-intron	ENST00000264380	ENST00000308862		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
3UTR-intron	ENST00000264380	ENST00000407449		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
3UTR-intron	ENST00000264380	ENST00000474721		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-3UTR	ENST00000392202	ENST00000264380		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000392202	ENST00000392202		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000392202	ENST00000308862		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000392202	ENST00000407449		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000392202	ENST00000474721		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-3UTR	ENST00000308862	ENST00000264380		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000308862	ENST00000392202		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000308862	ENST00000308862		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000308862	ENST00000407449		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000308862	ENST00000474721		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-3UTR	ENST00000407449	ENST00000264380		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000407449	ENST00000392202		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000407449	ENST00000308862		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000407449	ENST00000407449		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000407449	ENST00000474721		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-3UTR	ENST00000474721	ENST00000264380		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000474721	ENST00000392202		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000474721	ENST00000308862		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000474721	ENST00000407449		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000474721	ENST00000474721		ChiTaRS3.1			AA578440	PIKFYVE	chr2	209221863	+	PIKFYVE	chr2	209221818	-
intron-intron	ENST00000518527	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000518527	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000518527	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000377360	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000377360	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000328939	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000328939	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000390656	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000390656	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000520740	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000520740	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000434108	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000434108	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000400968		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-3UTR	ENST00000411494	ENST00000432079		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000460715		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000416058		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000367446		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000367445		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000367444		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000367443		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000411494	ENST00000367441		ChiTaRS3.1			AA074210	KCNIP1	chr5	169793046	-	TROVE2	chr1	193057020	+
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050785	KMT2A	chr11	118355449	+	AFF1	chr4	88010585	+
intron-5UTR	ENST00000414423	ENST00000401695		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000414423	ENST00000407193		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-intron	ENST00000414423	ENST00000312037		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000295024	ENST00000401695		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000295024	ENST00000407193		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-intron	ENST00000295024	ENST00000312037		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000366852	ENST00000401695		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000366852	ENST00000407193		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-intron	ENST00000366852	ENST00000312037		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000479727	ENST00000401695		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-5UTR	ENST00000479727	ENST00000407193		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-intron	ENST00000479727	ENST00000312037		ChiTaRS3.1			AF116710	WDR26	chr1	224614528	+	RPS14	chr5	149829294	-
intron-intron	ENST00000479974	ENST00000479974		ChiTaRS3.1			AI571420	MALSU1	chr7	23347270	-	MALSU1	chr7	23348832	-
intron-intron	ENST00000479974	ENST00000466681		ChiTaRS3.1			AI571420	MALSU1	chr7	23347270	-	MALSU1	chr7	23348832	-
intron-intron	ENST00000466681	ENST00000479974		ChiTaRS3.1			AI571420	MALSU1	chr7	23347270	-	MALSU1	chr7	23348832	-
intron-intron	ENST00000466681	ENST00000466681		ChiTaRS3.1			AI571420	MALSU1	chr7	23347270	-	MALSU1	chr7	23348832	-
intron-intron	ENST00000392865	ENST00000392865		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000392865	ENST00000369101		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000392865	ENST00000369103		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000392865	ENST00000469575		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369101	ENST00000392865		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369101	ENST00000369101		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369101	ENST00000369103		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369101	ENST00000469575		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369103	ENST00000392865		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369103	ENST00000369101		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369103	ENST00000369103		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000369103	ENST00000469575		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000469575	ENST00000392865		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000469575	ENST00000369101		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000469575	ENST00000369103		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000469575	ENST00000469575		ChiTaRS3.1			AW749630	RGS10	chr10	121283496	+	RGS10	chr10	121279267	+
intron-intron	ENST00000534358	ENST00000338257		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-5UTR	ENST00000534358	ENST00000595046		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-intron	ENST00000389506	ENST00000338257		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-5UTR	ENST00000389506	ENST00000595046		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-intron	ENST00000354520	ENST00000338257		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-5UTR	ENST00000354520	ENST00000595046		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-intron	ENST00000420751	ENST00000338257		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-5UTR	ENST00000420751	ENST00000595046		ChiTaRS3.1			AF499605	KMT2A	chr11	118355418	+	MYO1F	chr19	8641956	-
intron-intron	ENST00000374023	ENST00000448662		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000431808		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000284776		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000437304		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000319471		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000449407		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000355634		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000393528		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000418609		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374023	ENST00000498125		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000448662		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000431808		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000284776		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000437304		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000319471		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000449407		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000355634		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000393528		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000418609		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374026	ENST00000498125		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000448662		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000431808		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000284776		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000437304		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000319471		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000449407		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000355634		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000393528		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000418609		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-intron	ENST00000374021	ENST00000498125		ChiTaRS3.1			BM969290	C6orf106	chr6	34555147	+	SORBS2	chr4	186686434	+
intron-3UTR	ENST00000550574	ENST00000318006		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
intron-intron	ENST00000550574	ENST00000348544		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
intron-intron	ENST00000550574	ENST00000568357		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-3UTR	ENST00000541364	ENST00000318006		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-intron	ENST00000541364	ENST00000348544		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-intron	ENST00000541364	ENST00000568357		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-3UTR	ENST00000301072	ENST00000318006		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-intron	ENST00000301072	ENST00000348544		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-intron	ENST00000301072	ENST00000568357		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
intron-3UTR	ENST00000549183	ENST00000318006		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
intron-intron	ENST00000549183	ENST00000348544		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
intron-intron	ENST00000549183	ENST00000568357		ChiTaRS3.1			BE907310	TUBA1C	chr12	49666560	-	VPS39	chr15	42451456	-
5CDS-5UTR	ENST00000355666	ENST00000355666		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000355666	ENST00000399017		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000355666	ENST00000354749		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-3UTR	ENST00000355666	ENST00000479930		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-intron	ENST00000355666	ENST00000540756		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000355666	ENST00000399010		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399017	ENST00000355666		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399017	ENST00000399017		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399017	ENST00000354749		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-3UTR	ENST00000399017	ENST00000479930		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-intron	ENST00000399017	ENST00000540756		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399017	ENST00000399010		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000354749	ENST00000355666		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000354749	ENST00000399017		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000354749	ENST00000354749		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-3UTR	ENST00000354749	ENST00000479930		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-intron	ENST00000354749	ENST00000540756		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000354749	ENST00000399010		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
3UTR-5UTR	ENST00000479930	ENST00000355666		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
3UTR-5UTR	ENST00000479930	ENST00000399017		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
3UTR-5UTR	ENST00000479930	ENST00000354749		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
3UTR-3UTR	ENST00000479930	ENST00000479930		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
3UTR-intron	ENST00000479930	ENST00000540756		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
3UTR-5UTR	ENST00000479930	ENST00000399010		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-5UTR	ENST00000540756	ENST00000355666		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-5UTR	ENST00000540756	ENST00000399017		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-5UTR	ENST00000540756	ENST00000354749		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-3UTR	ENST00000540756	ENST00000479930		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-intron	ENST00000540756	ENST00000540756		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-5UTR	ENST00000540756	ENST00000399010		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399010	ENST00000355666		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399010	ENST00000399017		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399010	ENST00000354749		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-3UTR	ENST00000399010	ENST00000479930		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-intron	ENST00000399010	ENST00000540756		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
5CDS-5UTR	ENST00000399010	ENST00000399010		ChiTaRS3.1			BE939550	TTC3	chr21	38459694	-	TTC3	chr21	38459556	+
intron-5UTR	ENST00000469972	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000469972	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000469972	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000469972	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000469972	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000469972	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000469972	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372047	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372050	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393160	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000393157	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000542690	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000469972		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000372047		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000372050		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000393160		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000393157		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000542690		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-5UTR	ENST00000372062	ENST00000372062		ChiTaRS3.1			AK090450	RALGDS	chr9	135984227	+	RALGDS	chr9	135984179	-
intron-3UTR	ENST00000444918	ENST00000402738		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000444918	ENST00000407637		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000444918	ENST00000601319		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-3UTR	ENST00000444918	ENST00000264345		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000444918	ENST00000543130		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-3UTR	ENST00000403897	ENST00000402738		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000403897	ENST00000407637		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000403897	ENST00000601319		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-3UTR	ENST00000403897	ENST00000264345		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000403897	ENST00000543130		ChiTaRS3.1			AI908960	CAPN14	chr2	31397364	+	HERC3	chr4	89629028	+
intron-intron	ENST00000534862	ENST00000373203		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000534862	ENST00000344849		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000534862	ENST00000480266		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000538448	ENST00000373203		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000538448	ENST00000344849		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000538448	ENST00000480266		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375862	ENST00000373203		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375862	ENST00000344849		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375862	ENST00000480266		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000520553	ENST00000373203		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000520553	ENST00000344849		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000520553	ENST00000480266		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000518730	ENST00000373203		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000518730	ENST00000344849		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000518730	ENST00000480266		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375852	ENST00000373203		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375852	ENST00000344849		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375852	ENST00000480266		ChiTaRS3.1			BI026800	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000450536	ENST00000340635		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000360047		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000507116		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000502484		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000546160		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000502575		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000358923		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000503258		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000405755		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000317118		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000450536	ENST00000503947		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000340635		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000360047		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000507116		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000502484		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000546160		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000502575		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000358923		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000503258		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000405755		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000317118		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000367663	ENST00000503947		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000340635		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000360047		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000507116		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000502484		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000546160		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000502575		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000358923		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000503258		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000405755		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000317118		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000409812	ENST00000503947		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000340635		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000360047		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000507116		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000502484		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000546160		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000502575		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000358923		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000503258		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000405755		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000317118		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000258062	ENST00000503947		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000340635		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000360047		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000507116		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000502484		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000546160		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000502575		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000358923		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000503258		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000405755		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000317118		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000415951	ENST00000503947		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000340635		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000360047		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000507116		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000502484		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000546160		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000502575		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000358923		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000503258		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000405755		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000317118		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-intron	ENST00000531675	ENST00000503947		ChiTaRS3.1			BE928480	REPS1	chr6	139228509	-	PDE4D	chr5	59386781	-
intron-3UTR	ENST00000306107	ENST00000261267		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000306107	ENST00000549690		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000306107	ENST00000548839		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-3UTR	ENST00000472644	ENST00000261267		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000472644	ENST00000549690		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000472644	ENST00000548839		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-3UTR	ENST00000481337	ENST00000261267		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000481337	ENST00000549690		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000481337	ENST00000548839		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-3UTR	ENST00000486979	ENST00000261267		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000486979	ENST00000549690		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000486979	ENST00000548839		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-3UTR	ENST00000389927	ENST00000261267		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000389927	ENST00000549690		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000389927	ENST00000548839		ChiTaRS3.1			BC017840	ALCAM	chr3	105239869	+	LYZ	chr12	69747555	+
intron-intron	ENST00000334801	ENST00000335312		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000334801	ENST00000539785		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000334801	ENST00000589578		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000334801	ENST00000537021		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000334801	ENST00000587482		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000526143	ENST00000335312		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000526143	ENST00000539785		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000526143	ENST00000589578		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000526143	ENST00000537021		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
intron-intron	ENST00000526143	ENST00000587482		ChiTaRS3.1			BF739320	BCL9L	chr11	118771681	+	PIP5K1C	chr19	3633817	-
5CDS-intron	ENST00000253110	ENST00000253110		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000253110	ENST00000591813		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000253110	ENST00000397881		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000591813	ENST00000253110		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000591813	ENST00000591813		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000591813	ENST00000397881		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000397881	ENST00000253110		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000397881	ENST00000591813		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000397881	ENST00000397881		ChiTaRS3.1			AU120300	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
intron-intron	ENST00000326735	ENST00000326735		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000326735	ENST00000341676		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000326735	ENST00000452699		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000326735	ENST00000502860		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000341676	ENST00000326735		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000341676	ENST00000341676		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000341676	ENST00000452699		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000341676	ENST00000502860		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000452699	ENST00000326735		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000452699	ENST00000341676		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000452699	ENST00000452699		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000452699	ENST00000502860		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000502860	ENST00000326735		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000502860	ENST00000341676		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000502860	ENST00000452699		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
intron-intron	ENST00000502860	ENST00000502860		ChiTaRS3.1			AK130020	ATP13A2	chr1	17319912	-	ATP13A2	chr1	17327342	-
5CDS-3UTR	ENST00000393078	ENST00000393078		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000393078	ENST00000485588		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000393080		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000467132		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000482740		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000393078		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-intron	ENST00000485588	ENST00000485588		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000393080		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000467132		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000482740		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000393078		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000393080	ENST00000485588		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000393080		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000467132		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000482740		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000393078		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000467132	ENST00000485588		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000393080		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000467132		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000482740		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000393078		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000482740	ENST00000485588		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000393080		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000467132		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000482740		ChiTaRS3.1			AW994810	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-intron	ENST00000367021	ENST00000540235		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000367021	ENST00000393930		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000367021	ENST00000393931		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000367021	ENST00000310706		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000542854	ENST00000540235		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000542854	ENST00000393930		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000542854	ENST00000393931		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-intron	ENST00000542854	ENST00000310706		ChiTaRS3.1			BQ352330	IRF6	chr1	209963892	+	JUP	chr17	39740552	+
intron-3UTR	ENST00000355624	ENST00000355624		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-intron	ENST00000355624	ENST00000369199		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-5UTR	ENST00000355624	ENST00000476207		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-3UTR	ENST00000369199	ENST00000355624		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-intron	ENST00000369199	ENST00000369199		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-5UTR	ENST00000369199	ENST00000476207		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-3UTR	ENST00000476207	ENST00000355624		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-intron	ENST00000476207	ENST00000369199		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-5UTR	ENST00000476207	ENST00000476207		ChiTaRS3.1			BF798700	RAB11FIP2	chr10	119765120	+	RAB11FIP2	chr10	119765339	-
intron-3CDS	ENST00000353258	ENST00000343916		ChiTaRS3.1			DA571660	GDE1	chr16	19533250	-	COL9A3	chr20	61461913	+
intron-intron	ENST00000353258	ENST00000462700		ChiTaRS3.1			DA571660	GDE1	chr16	19533250	-	COL9A3	chr20	61461913	+
intron-intron	ENST00000571669	ENST00000571669		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000571669	ENST00000263092		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000571669	ENST00000538844		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000263092	ENST00000571669		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000263092	ENST00000263092		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000263092	ENST00000538844		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000538844	ENST00000571669		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000538844	ENST00000263092		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000538844	ENST00000538844		ChiTaRS3.1			CV395950	METTL16	chr17	2385935	+	METTL16	chr17	2404906	-
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582410	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
3UTR-3CDS	ENST00000371514	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-3CDS	ENST00000371514	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-intron	ENST00000371514	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000528311	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000528311	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000528311	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000371509	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000371509	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000371509	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
In-frame	ENST00000407246	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
In-frame	ENST00000407246	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
5CDS-intron	ENST00000407246	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000371513	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000371513	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000371513	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000473584	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000473584	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000473584	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000430330	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000430330	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000430330	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-3CDS	ENST00000408941	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-3CDS	ENST00000408941	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-intron	ENST00000408941	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000435345	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-3CDS	ENST00000435345	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000435345	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-3CDS	ENST00000488965	ENST00000361189		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-3CDS	ENST00000488965	ENST00000361557		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
3UTR-intron	ENST00000488965	ENST00000511624		ChiTaRS3.1			AI082430	SCP2	chr1	53516929	-	PJA2	chr5	108714077	+
intron-intron	ENST00000269554	ENST00000440005		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000269554	ENST00000438934		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000269554	ENST00000421572		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000269554	ENST00000399539		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000269554	ENST00000537283		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000269554	ENST00000424407		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000269554	ENST00000540720		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000440005		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000438934		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000421572		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000399539		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000537283		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000424407		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000311500	ENST00000540720		ChiTaRS3.1			AF130850	PIP4K2B	chr17	36927442	-	DGCR5	chr22	19014309	+
intron-intron	ENST00000332142	ENST00000276816		ChiTaRS3.1			AW811810	KCNH7	chr2	163383517	-	ZNF16	chr8	146160678	-
intron-intron	ENST00000332142	ENST00000394909		ChiTaRS3.1			AW811810	KCNH7	chr2	163383517	-	ZNF16	chr8	146160678	-
intron-intron	ENST00000328032	ENST00000276816		ChiTaRS3.1			AW811810	KCNH7	chr2	163383517	-	ZNF16	chr8	146160678	-
intron-intron	ENST00000328032	ENST00000394909		ChiTaRS3.1			AW811810	KCNH7	chr2	163383517	-	ZNF16	chr8	146160678	-
intron-intron	ENST00000477019	ENST00000276816		ChiTaRS3.1			AW811810	KCNH7	chr2	163383517	-	ZNF16	chr8	146160678	-
intron-intron	ENST00000477019	ENST00000394909		ChiTaRS3.1			AW811810	KCNH7	chr2	163383517	-	ZNF16	chr8	146160678	-
intron-intron	ENST00000301831	ENST00000295462		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000301831	ENST00000512733		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000301831	ENST00000515541		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000301831	ENST00000380645		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000420927	ENST00000295462		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000420927	ENST00000512733		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000420927	ENST00000515541		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000420927	ENST00000380645		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000489118	ENST00000295462		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000489118	ENST00000512733		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000489118	ENST00000515541		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000489118	ENST00000380645		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000414606	ENST00000295462		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000414606	ENST00000512733		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000414606	ENST00000515541		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000414606	ENST00000380645		ChiTaRS3.1			AW812700	ULK4	chr3	41977686	-	PAQR3	chr4	79851809	+
intron-intron	ENST00000409262	ENST00000409262		ChiTaRS3.1			BF366530	TET3	chr2	74316770	+	TET3	chr2	74316618	-
5CDS-intron	ENST00000563679	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000563679	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000563679	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000563679	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000563679	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000325823	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000325823	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000325823	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000325823	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000325823	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000447912	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000447912	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000447912	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000447912	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000447912	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000535621	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000535621	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000535621	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000535621	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000535621	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000455313	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000455313	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000455313	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000455313	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
intron-intron	ENST00000455313	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000396410	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000396410	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000396410	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000396410	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000396410	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000569715	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000569715	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000569715	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000569715	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000569715	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000450288	ENST00000370836		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000450288	ENST00000521489		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000450288	ENST00000370833		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000450288	ENST00000406696		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5CDS-intron	ENST00000450288	ENST00000602570		ChiTaRS3.1			BF993350	PDXDC1	chr16	15130117	-	HS6ST2	chrX	132010428	-
5UTR-5UTR	ENST00000513761	ENST00000513761		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000513761	ENST00000347613		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000513761	ENST00000360642		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-intron	ENST00000513761	ENST00000504131		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-intron	ENST00000513761	ENST00000506924		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000347613	ENST00000513761		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000347613	ENST00000347613		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000347613	ENST00000360642		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-intron	ENST00000347613	ENST00000504131		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-intron	ENST00000347613	ENST00000506924		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000360642	ENST00000513761		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000360642	ENST00000347613		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-5UTR	ENST00000360642	ENST00000360642		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-intron	ENST00000360642	ENST00000504131		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
5UTR-intron	ENST00000360642	ENST00000506924		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-5UTR	ENST00000504131	ENST00000513761		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-5UTR	ENST00000504131	ENST00000347613		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-5UTR	ENST00000504131	ENST00000360642		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-intron	ENST00000504131	ENST00000504131		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-intron	ENST00000504131	ENST00000506924		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-5UTR	ENST00000506924	ENST00000513761		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-5UTR	ENST00000506924	ENST00000347613		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-5UTR	ENST00000506924	ENST00000360642		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-intron	ENST00000506924	ENST00000504131		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-intron	ENST00000506924	ENST00000506924		ChiTaRS3.1			X78520	CLCN3	chr4	170541744	-	CLCN3	chr4	170541799	+
intron-intron	ENST00000315684	ENST00000445145		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000315684	ENST00000388767		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000315684	ENST00000345068		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000315684	ENST00000580212		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000315684	ENST00000456796		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000315684	ENST00000584969		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000315684	ENST00000577909		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000445145		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000388767		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000345068		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000580212		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000456796		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000584969		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000581671	ENST00000577909		ChiTaRS3.1			DA183630	CTC1	chr17	8146406	-	CORO6	chr17	27945762	-
intron-intron	ENST00000534358	ENST00000373644		ChiTaRS3.1			FM165191	KMT2A	chr11	118352101	+	TET1	chr10	70449334	+
intron-intron	ENST00000389506	ENST00000373644		ChiTaRS3.1			FM165191	KMT2A	chr11	118352101	+	TET1	chr10	70449334	+
intron-intron	ENST00000354520	ENST00000373644		ChiTaRS3.1			FM165191	KMT2A	chr11	118352101	+	TET1	chr10	70449334	+
intron-intron	ENST00000420751	ENST00000373644		ChiTaRS3.1			FM165191	KMT2A	chr11	118352101	+	TET1	chr10	70449334	+
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF333330	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000589876	ENST00000379561		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000589876	ENST00000473775		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000245925	ENST00000379561		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000245925	ENST00000473775		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000536630	ENST00000379561		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000536630	ENST00000473775		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000587152	ENST00000379561		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000587152	ENST00000473775		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000586902	ENST00000379561		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000586902	ENST00000473775		ChiTaRS3.1			BQ343820	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000259748	ENST00000259748		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-3CDS	ENST00000259748	ENST00000373018		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-intron	ENST00000259748	ENST00000466420		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-3CDS	ENST00000373018	ENST00000259748		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-3CDS	ENST00000373018	ENST00000373018		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-intron	ENST00000373018	ENST00000466420		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-3CDS	ENST00000466420	ENST00000259748		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-3CDS	ENST00000466420	ENST00000373018		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
intron-intron	ENST00000466420	ENST00000466420		ChiTaRS3.1			CA777700	FRS3	chr6	41739039	-	FRS3	chr6	41738740	+
3UTR-3UTR	ENST00000238788	ENST00000238788		ChiTaRS3.1			CA427500	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3UTR	ENST00000238788	ENST00000404032		ChiTaRS3.1			CA427500	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3UTR	ENST00000404032	ENST00000238788		ChiTaRS3.1			CA427500	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3UTR	ENST00000404032	ENST00000404032		ChiTaRS3.1			CA427500	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3CDS	ENST00000310624	ENST00000310624		ChiTaRS3.1			BM699050	NEFH	chr22	29886959	+	NEFH	chr22	29886044	+
3UTR-3UTR	ENST00000313949	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000313949	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000313949	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000313949	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000313949	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371098	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371098	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371098	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371098	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371098	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000371075	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000371075	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000371075	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000371075	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000371075	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371100	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371100	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371100	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371100	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371100	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371099	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371099	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371099	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371099	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371099	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371102	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371102	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371102	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371102	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371102	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000464624	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000464624	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000464624	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-3UTR	ENST00000464624	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
3UTR-intron	ENST00000464624	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000306120	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000306120	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000306120	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000306120	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000306120	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371095	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371095	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371095	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371095	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371095	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371085	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371085	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371085	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000371085	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000371085	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000354359	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000354359	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000354359	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000354359	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000354359	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000265620	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000265620	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000265620	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000265620	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000265620	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000306090	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000306090	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000306090	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-3UTR	ENST00000306090	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
5CDS-intron	ENST00000306090	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371081	ENST00000313949		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000371098		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371081	ENST00000371075		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371081	ENST00000371100		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000371099		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000371102		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-3UTR	ENST00000371081	ENST00000464624		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000306120		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000371095		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000371085		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000354359		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000265620		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000306090		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000371081	ENST00000371081		ChiTaRS3.1			BE171170	GNAS	chr20	57484609	-	GNAS	chr20	57485070	+
intron-intron	ENST00000378609	ENST00000378609		ChiTaRS3.1			AI933070	GNB1	chr1	1731003	+	GNB1	chr1	1729724	+
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			AI933070	GNB1	chr1	1731003	+	GNB1	chr1	1729724	+
intron-intron	ENST00000472614	ENST00000378609		ChiTaRS3.1			AI933070	GNB1	chr1	1731003	+	GNB1	chr1	1729724	+
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			AI933070	GNB1	chr1	1731003	+	GNB1	chr1	1729724	+
In-frame	ENST00000331320	ENST00000331320		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000331320	ENST00000406191		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000331320	ENST00000405646		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5CDS-5UTR	ENST00000331320	ENST00000435036		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000406191	ENST00000331320		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000406191	ENST00000406191		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000406191	ENST00000405646		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5CDS-5UTR	ENST00000406191	ENST00000435036		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000405646	ENST00000331320		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000405646	ENST00000406191		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
In-frame	ENST00000405646	ENST00000405646		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5CDS-5UTR	ENST00000405646	ENST00000435036		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5UTR-3CDS	ENST00000435036	ENST00000331320		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5UTR-3CDS	ENST00000435036	ENST00000406191		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5UTR-3CDS	ENST00000435036	ENST00000405646		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
5UTR-5UTR	ENST00000435036	ENST00000435036		ChiTaRS3.1			BE159770	MTA1	chr14	105930788	+	MTA1	chr14	105931052	-
intron-3CDS	ENST00000457361	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000457361	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000457361	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000457361	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000342002	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000342002	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000342002	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000342002	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000434687	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000434687	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000434687	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000434687	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000374319	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000374319	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000374319	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000374319	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000374327	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000374327	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000374327	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000374327	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000451136	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000451136	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000451136	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000451136	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000413091	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000413091	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000413091	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000413091	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000421754	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000421754	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000421754	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000421754	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000442445	ENST00000256935		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000442445	ENST00000540750		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3CDS	ENST00000442445	ENST00000520908		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-3UTR	ENST00000442445	ENST00000523351		ChiTaRS3.1			DA440020	IKZF2	chr2	214012195	-	DOCK2	chr5	169435498	+
intron-intron	ENST00000441917	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000441917		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000541887		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000261819		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000535482		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000544314		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000344395		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000536366		ChiTaRS3.1			AA425310	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000360876	ENST00000181796		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000378470		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000468747		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000378467		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000378465		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000378458		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000478076		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000378462		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000496330		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000479731		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000360876	ENST00000471815		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000181796		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000378470		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000468747		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000378467		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000378465		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000378458		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000478076		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000378462		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000496330		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000479731		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-intron	ENST00000397011	ENST00000471815		ChiTaRS3.1			BF812060	EIF3B	chr7	2408331	+	FAM107B	chr10	14633732	-
intron-3CDS	ENST00000262715	ENST00000262715		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-3CDS	ENST00000262715	ENST00000556935		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-intron	ENST00000262715	ENST00000545983		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-3CDS	ENST00000556935	ENST00000262715		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-3CDS	ENST00000556935	ENST00000556935		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-intron	ENST00000556935	ENST00000545983		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-3CDS	ENST00000545983	ENST00000262715		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-3CDS	ENST00000545983	ENST00000556935		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-intron	ENST00000545983	ENST00000545983		ChiTaRS3.1			BF588870	TEP1	chr14	20850272	-	TEP1	chr14	20850490	+
intron-3CDS	ENST00000216951	ENST00000257570		ChiTaRS3.1			AW376720	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000216951	ENST00000339275		ChiTaRS3.1			AW376720	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000541098	ENST00000257570		ChiTaRS3.1			AW376720	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000541098	ENST00000339275		ChiTaRS3.1			AW376720	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000451957	ENST00000257570		ChiTaRS3.1			AW376720	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000451957	ENST00000339275		ChiTaRS3.1			AW376720	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000398559	ENST00000398559		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-3CDS	ENST00000398559	ENST00000543976		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-intron	ENST00000398559	ENST00000489370		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-3CDS	ENST00000543976	ENST00000398559		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-3CDS	ENST00000543976	ENST00000543976		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-intron	ENST00000543976	ENST00000489370		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-3CDS	ENST00000489370	ENST00000398559		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-3CDS	ENST00000489370	ENST00000543976		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-intron	ENST00000489370	ENST00000489370		ChiTaRS3.1			BM828170	TMF1	chr3	69079134	-	TMF1	chr3	69101208	-
intron-3CDS	ENST00000322313	ENST00000264161		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-3CDS	ENST00000322313	ENST00000537273		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-5UTR	ENST00000322313	ENST00000463008		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-3CDS	ENST00000393006	ENST00000264161		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-3CDS	ENST00000393006	ENST00000537273		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-5UTR	ENST00000393006	ENST00000463008		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-3CDS	ENST00000409658	ENST00000264161		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-3CDS	ENST00000409658	ENST00000537273		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-5UTR	ENST00000409658	ENST00000463008		ChiTaRS3.1			AW363050	WDR33	chr2	128566048	+	DARS	chr2	136701000	-
intron-intron	ENST00000499869	ENST00000222214		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000499869	ENST00000591470		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000499869	ENST00000457854		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000499869	ENST00000422947		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000499869	ENST00000588242		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382451	ENST00000222214		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382451	ENST00000591470		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382451	ENST00000457854		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382451	ENST00000422947		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382451	ENST00000588242		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382452	ENST00000222214		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382452	ENST00000591470		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382452	ENST00000457854		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382452	ENST00000422947		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000382452	ENST00000588242		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000515743	ENST00000222214		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000515743	ENST00000591470		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000515743	ENST00000457854		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000515743	ENST00000422947		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000515743	ENST00000588242		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000502702	ENST00000222214		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000502702	ENST00000591470		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000502702	ENST00000457854		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000502702	ENST00000422947		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-intron	ENST00000502702	ENST00000588242		ChiTaRS3.1			AA167420	WDR1	chr4	10080617	+	GCDH	chr19	13004932	+
intron-3UTR	ENST00000367203	ENST00000367203		ChiTaRS3.1			BG988450	SOX13	chr1	204085632	-	SOX13	chr1	204086836	-
intron-intron	ENST00000367203	ENST00000367204		ChiTaRS3.1			BG988450	SOX13	chr1	204085632	-	SOX13	chr1	204086836	-
intron-3UTR	ENST00000367204	ENST00000367203		ChiTaRS3.1			BG988450	SOX13	chr1	204085632	-	SOX13	chr1	204086836	-
intron-intron	ENST00000367204	ENST00000367204		ChiTaRS3.1			BG988450	SOX13	chr1	204085632	-	SOX13	chr1	204086836	-
intron-3CDS	ENST00000358691	ENST00000350427		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000358691	ENST00000447342		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000358691	ENST00000431882		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000358691	ENST00000438029		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580168	ENST00000350427		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580168	ENST00000447342		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580168	ENST00000431882		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580168	ENST00000438029		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580662	ENST00000350427		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580662	ENST00000447342		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580662	ENST00000431882		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-3CDS	ENST00000580662	ENST00000438029		ChiTaRS3.1			BG291710	HELZ	chr17	65070293	-	C7orf25	chr7	42949277	-
intron-intron	ENST00000401642	ENST00000401642		ChiTaRS3.1			BF368690	SCFD2	chr4	53768182	+	SCFD2	chr4	53768361	-
intron-intron	ENST00000401642	ENST00000388940		ChiTaRS3.1			BF368690	SCFD2	chr4	53768182	+	SCFD2	chr4	53768361	-
intron-intron	ENST00000388940	ENST00000401642		ChiTaRS3.1			BF368690	SCFD2	chr4	53768182	+	SCFD2	chr4	53768361	-
intron-intron	ENST00000388940	ENST00000388940		ChiTaRS3.1			BF368690	SCFD2	chr4	53768182	+	SCFD2	chr4	53768361	-
intron-3UTR	ENST00000379028	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379028	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379028	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379028	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379028	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379028	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000379028	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000413765	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000413765	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000413765	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000351718	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000351718	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000351718	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379024	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379024	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000379024	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379022	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379022	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000379022	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000425651	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000425651	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000425651	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000379028		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000413765		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000351718		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000379024		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000522550	ENST00000379022		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000522550	ENST00000425651		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000522550	ENST00000522550		ChiTaRS3.1			BF593690	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006730	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
3UTR-3CDS	ENST00000388825	ENST00000237530		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
3UTR-intron	ENST00000388825	ENST00000373622		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
3UTR-intron	ENST00000388825	ENST00000470352		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-3CDS	ENST00000521722	ENST00000237530		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-intron	ENST00000521722	ENST00000373622		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-intron	ENST00000521722	ENST00000470352		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-3CDS	ENST00000517973	ENST00000237530		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-intron	ENST00000517973	ENST00000373622		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-intron	ENST00000517973	ENST00000470352		ChiTaRS3.1			AA740310	GPX3	chr5	150408293	-	RPN2	chr20	35826827	-
intron-3CDS	ENST00000506140	ENST00000518659		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000506140	ENST00000545108		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000506140	ENST00000520393		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000506140	ENST00000519204		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000506140	ENST00000520394		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000506140	ENST00000403607		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000515571	ENST00000518659		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000515571	ENST00000545108		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000515571	ENST00000520393		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000515571	ENST00000519204		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000515571	ENST00000520394		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000515571	ENST00000403607		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000382599	ENST00000518659		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000382599	ENST00000545108		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000382599	ENST00000520393		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000382599	ENST00000519204		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000382599	ENST00000520394		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000382599	ENST00000403607		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000507294	ENST00000518659		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000507294	ENST00000545108		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000507294	ENST00000520393		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000507294	ENST00000519204		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000507294	ENST00000520394		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000507294	ENST00000403607		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000314348	ENST00000518659		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000314348	ENST00000545108		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000314348	ENST00000520393		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000314348	ENST00000519204		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000314348	ENST00000520394		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000314348	ENST00000403607		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000335585	ENST00000518659		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-3CDS	ENST00000335585	ENST00000545108		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000335585	ENST00000520393		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000335585	ENST00000519204		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000335585	ENST00000520394		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
intron-intron	ENST00000335585	ENST00000403607		ChiTaRS3.1			BF363040	PPP2R2C	chr4	6407684	-	TENM2	chr5	166802418	+
In-frame	ENST00000316448	ENST00000316448		ChiTaRS3.1			BE763150	CALR	chr19	13051604	-	CALR	chr19	13054525	+
intron-3CDS	ENST00000399410	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000399410	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-3CDS	ENST00000349029	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000349029	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-3CDS	ENST00000351154	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000351154	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-3CDS	ENST00000399408	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000399408	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-3CDS	ENST00000345148	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000345148	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-3CDS	ENST00000346370	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000346370	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-3CDS	ENST00000576557	ENST00000274217		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000576557	ENST00000506258		ChiTaRS3.1			BG982650	ABCC1	chr16	16089448	-	FAM105A	chr5	14607545	+
intron-intron	ENST00000471389	ENST00000396368		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000471389	ENST00000540441		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000471389	ENST00000344181		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000471389	ENST00000551742		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000471389	ENST00000602337		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000471389	ENST00000548025		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000471389	ENST00000547936		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000396368		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000540441		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000344181		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000551742		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000602337		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000548025		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000394647	ENST00000547936		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000396368		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000540441		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000344181		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000551742		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000602337		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000548025		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000431610	ENST00000547936		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000396368		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000540441		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000344181		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000551742		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000602337		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000548025		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000460382	ENST00000547936		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000396368		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000540441		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000344181		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000551742		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000602337		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000548025		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000463855	ENST00000547936		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000396368		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000540441		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000344181		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000551742		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000602337		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000548025		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
intron-intron	ENST00000472835	ENST00000547936		ChiTaRS3.1			AW812420	FTO	chr16	54003345	-	KIAA0430	chr16	15713204	+
Frame-shit	ENST00000406610	ENST00000406610		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000462231		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000349953		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000358768		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000351153		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000488622		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-3CDS	ENST00000462231	ENST00000406610		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000462231		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000349953		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000358768		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000351153		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000488622		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000349953	ENST00000406610		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000462231		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000349953		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000358768		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000351153		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000488622		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000358768	ENST00000406610		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000462231		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000349953		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000358768		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000351153		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000488622		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000351153	ENST00000406610		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000462231		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000349953		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000358768		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000351153		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000488622		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-3CDS	ENST00000488622	ENST00000406610		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000462231		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000349953		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000358768		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000351153		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000488622		ChiTaRS3.1			AF428250	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-3UTR	ENST00000389677	ENST00000389677		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-3UTR	ENST00000389677	ENST00000538471		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-5UTR	ENST00000389677	ENST00000461803		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-3UTR	ENST00000538471	ENST00000389677		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-3UTR	ENST00000538471	ENST00000538471		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-5UTR	ENST00000538471	ENST00000461803		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-3UTR	ENST00000461803	ENST00000389677		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-3UTR	ENST00000461803	ENST00000538471		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-5UTR	ENST00000461803	ENST00000461803		ChiTaRS3.1			H87940	FAXC	chr6	99728785	+	FAXC	chr6	99728730	-
intron-3UTR	ENST00000375217	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000375226	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000375267	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000375254	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000375225	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000429347	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000375224	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000543981	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000467272	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000375218	ENST00000225964		ChiTaRS3.1			AI352530	UBR4	chr1	19401372	+	COL1A1	chr17	48262024	-
intron-3UTR	ENST00000397517	ENST00000159111		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000397517	ENST00000381759		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000397517	ENST00000536461		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000397517	ENST00000592175		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000539966	ENST00000159111		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000539966	ENST00000381759		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000539966	ENST00000536461		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000539966	ENST00000592175		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000481288	ENST00000159111		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000481288	ENST00000381759		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000481288	ENST00000536461		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000481288	ENST00000592175		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000376547	ENST00000159111		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000376547	ENST00000381759		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000376547	ENST00000536461		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000376547	ENST00000592175		ChiTaRS3.1			AW957150	STK24	chr13	99115975	-	KDM4B	chr19	5151703	+
3UTR-3UTR	ENST00000327134	ENST00000327134		ChiTaRS3.1			AA847430	PAK2	chr3	196556561	+	PAK2	chr3	196556737	-
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000377795	ENST00000524315		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000353334	ENST00000524315		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000524315	ENST00000524315		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000009530	ENST00000524315		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			H20340	CD74	chr5	149781523	+	CD74	chr5	149781367	-
intron-intron	ENST00000378455	ENST00000521831		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378455	ENST00000355315		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378455	ENST00000303759		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378455	ENST00000517933		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378455	ENST00000518801		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378455	ENST00000523975		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378455	ENST00000396723		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378455	ENST00000523061		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378455	ENST00000521524		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378455	ENST00000519367		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000342274	ENST00000521831		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000342274	ENST00000355315		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000342274	ENST00000303759		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000342274	ENST00000517933		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000342274	ENST00000518801		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000342274	ENST00000523975		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000342274	ENST00000396723		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000342274	ENST00000523061		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000342274	ENST00000521524		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000342274	ENST00000519367		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378463	ENST00000521831		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378463	ENST00000355315		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378463	ENST00000303759		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378463	ENST00000517933		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378463	ENST00000518801		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378463	ENST00000523975		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378463	ENST00000396723		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378463	ENST00000523061		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378463	ENST00000521524		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378463	ENST00000519367		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000397354	ENST00000521831		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000397354	ENST00000355315		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000397354	ENST00000303759		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000397354	ENST00000517933		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000397354	ENST00000518801		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000397354	ENST00000523975		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000397354	ENST00000396723		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000397354	ENST00000523061		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000397354	ENST00000521524		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000397354	ENST00000519367		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378444	ENST00000521831		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378444	ENST00000355315		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378444	ENST00000303759		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378444	ENST00000517933		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378444	ENST00000518801		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378444	ENST00000523975		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-3UTR	ENST00000378444	ENST00000396723		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378444	ENST00000523061		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378444	ENST00000521524		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
intron-intron	ENST00000378444	ENST00000519367		ChiTaRS3.1			AI904310	BCOR	chrX	39911469	+	CHCHD7	chr8	57130830	-
In-frame	ENST00000541323	ENST00000541323		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000541323	ENST00000251630		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000541323	ENST00000398074		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
5CDS-3UTR	ENST00000541323	ENST00000523248		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000251630	ENST00000541323		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000251630	ENST00000251630		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000251630	ENST00000398074		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
5CDS-3UTR	ENST00000251630	ENST00000523248		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000398074	ENST00000541323		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000398074	ENST00000251630		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
In-frame	ENST00000398074	ENST00000398074		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
5CDS-3UTR	ENST00000398074	ENST00000523248		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
intron-3CDS	ENST00000523248	ENST00000541323		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
intron-3CDS	ENST00000523248	ENST00000251630		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
intron-3CDS	ENST00000523248	ENST00000398074		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
intron-3UTR	ENST00000523248	ENST00000523248		ChiTaRS3.1			AA455210	PDGFRL	chr8	17478679	-	PDGFRL	chr8	17491674	+
intron-3CDS	ENST00000399916	ENST00000399916		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000399916	ENST00000308873		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000399916	ENST00000338888		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000399916	ENST00000540420		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000399916	ENST00000496967		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000399916		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000308873		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000338888		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000540420		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000308873	ENST00000496967		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000399916		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000308873		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000338888		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000540420		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000338888	ENST00000496967		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000399916		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000308873		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000338888		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000540420		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000540420	ENST00000496967		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000399916		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000308873		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000338888		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000540420		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000496967	ENST00000496967		ChiTaRS3.1			BU431690	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000394773	ENST00000394773		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000394773	ENST00000278845		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000394773	ENST00000531557		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000394773	ENST00000494176		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000394773	ENST00000529309		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000394773	ENST00000438258		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000278845	ENST00000394773		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000278845	ENST00000278845		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000278845	ENST00000531557		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000278845	ENST00000494176		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000278845	ENST00000529309		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000278845	ENST00000438258		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000531557	ENST00000394773		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000531557	ENST00000278845		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000531557	ENST00000531557		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000531557	ENST00000494176		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000531557	ENST00000529309		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000531557	ENST00000438258		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000494176	ENST00000394773		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000494176	ENST00000278845		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000494176	ENST00000531557		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000494176	ENST00000494176		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000494176	ENST00000529309		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000494176	ENST00000438258		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000529309	ENST00000394773		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000529309	ENST00000278845		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000529309	ENST00000531557		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000529309	ENST00000494176		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000529309	ENST00000529309		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000529309	ENST00000438258		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000438258	ENST00000394773		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000438258	ENST00000278845		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000438258	ENST00000531557		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000438258	ENST00000494176		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000438258	ENST00000529309		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-intron	ENST00000438258	ENST00000438258		ChiTaRS3.1			BG470510	EML3	chr11	62370289	+	EML3	chr11	62370335	-
intron-3CDS	ENST00000319380	ENST00000319380		ChiTaRS3.1			BE928410	UBE2O	chr17	74392604	+	UBE2O	chr17	74393955	-
intron-5UTR	ENST00000319380	ENST00000587581		ChiTaRS3.1			BE928410	UBE2O	chr17	74392604	+	UBE2O	chr17	74393955	-
intron-3CDS	ENST00000587581	ENST00000319380		ChiTaRS3.1			BE928410	UBE2O	chr17	74392604	+	UBE2O	chr17	74393955	-
intron-5UTR	ENST00000587581	ENST00000587581		ChiTaRS3.1			BE928410	UBE2O	chr17	74392604	+	UBE2O	chr17	74393955	-
intron-3UTR	ENST00000380250	ENST00000258439		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000380250	ENST00000432959		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000380250	ENST00000435268		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-3UTR	ENST00000463566	ENST00000258439		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000463566	ENST00000432959		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000463566	ENST00000435268		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-3UTR	ENST00000542859	ENST00000258439		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000542859	ENST00000432959		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000542859	ENST00000435268		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-3UTR	ENST00000380217	ENST00000258439		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000380217	ENST00000432959		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000380217	ENST00000435268		ChiTaRS3.1			BM311860	FRY	chr13	32861063	+	TMEM127	chr2	96917068	-
intron-intron	ENST00000535458	ENST00000477496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000460856		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000240874		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000360013		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000393496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000291478		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000428018		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000459915		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000535458	ENST00000462213		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000477496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000460856		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000240874		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000360013		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000393496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000291478		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000428018		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000459915		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
5UTR-intron	ENST00000290158	ENST00000462213		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000477496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000460856		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000240874		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000360013		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000393496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000291478		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000428018		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000459915		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000540627	ENST00000462213		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000477496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000460856		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000240874		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000360013		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000393496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000291478		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000428018		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000459915		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000537679	ENST00000462213		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000477496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000460856		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000240874		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000360013		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000393496		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000291478		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000428018		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000459915		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000577918	ENST00000462213		ChiTaRS3.1			CN287140	KPNB1	chr17	45727492	+	KALRN	chr3	123976637	-
intron-intron	ENST00000527001	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527001	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000257831	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000450654	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000530286	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000533754	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531728	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000531794	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000527001		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000257831		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000450654		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000530286		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000533754		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000531728		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000531794		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
intron-intron	ENST00000527935	ENST00000527935		ChiTaRS3.1			BF802590	EHF	chr11	34676279	-	EHF	chr11	34676429	+
Frame-shit	ENST00000344824	ENST00000337002		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
Frame-shit	ENST00000344824	ENST00000480708		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
5CDS-intron	ENST00000344824	ENST00000470355		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
Frame-shit	ENST00000538887	ENST00000337002		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
Frame-shit	ENST00000538887	ENST00000480708		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
5CDS-intron	ENST00000538887	ENST00000470355		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
Frame-shit	ENST00000300933	ENST00000337002		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
Frame-shit	ENST00000300933	ENST00000480708		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
5CDS-intron	ENST00000300933	ENST00000470355		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
intron-3CDS	ENST00000591645	ENST00000337002		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
intron-3CDS	ENST00000591645	ENST00000480708		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
intron-intron	ENST00000591645	ENST00000470355		ChiTaRS3.1			DA713220	TPM4	chr19	16197279	+	SEC62	chr3	169700595	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582480	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000403766	ENST00000403766		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
intron-3UTR	ENST00000403766	ENST00000376440		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
intron-3UTR	ENST00000403766	ENST00000460562		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
3UTR-intron	ENST00000376440	ENST00000403766		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
3UTR-3UTR	ENST00000376440	ENST00000376440		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
3UTR-3UTR	ENST00000376440	ENST00000460562		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
3UTR-intron	ENST00000460562	ENST00000403766		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
3UTR-3UTR	ENST00000460562	ENST00000376440		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
3UTR-3UTR	ENST00000460562	ENST00000460562		ChiTaRS3.1			BF917910	UBAC2	chr13	100037820	+	UBAC2	chr13	100037866	-
intron-intron	ENST00000396402	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396402	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396402	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396402	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396402	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396402	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396402	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000260433	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000396404	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000559878	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000405913	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000557858	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000396402		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000260433		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000396404		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000559878		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000405913		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000557858		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000492852	ENST00000492852		ChiTaRS3.1			BF367260	CYP19A1	chr15	51547947	+	CYP19A1	chr15	51547742	-
intron-intron	ENST00000370328	ENST00000540235		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370328	ENST00000393930		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370328	ENST00000393931		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370328	ENST00000310706		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370325	ENST00000540235		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370325	ENST00000393930		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370325	ENST00000393931		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000370325	ENST00000310706		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000393914	ENST00000540235		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000393914	ENST00000393930		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000393914	ENST00000393931		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000393914	ENST00000310706		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000483564	ENST00000540235		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000483564	ENST00000393930		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000483564	ENST00000393931		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
intron-intron	ENST00000483564	ENST00000310706		ChiTaRS3.1			CV354260	GABRE	chrX	151123890	+	JUP	chr17	39767326	+
5CDS-3UTR	ENST00000356940	ENST00000295633		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
5CDS-intron	ENST00000356940	ENST00000424703		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
5CDS-intron	ENST00000356940	ENST00000485968		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-3UTR	ENST00000535776	ENST00000295633		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-intron	ENST00000535776	ENST00000424703		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-intron	ENST00000535776	ENST00000485968		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-3UTR	ENST00000375802	ENST00000295633		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-intron	ENST00000375802	ENST00000424703		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-intron	ENST00000375802	ENST00000485968		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
3UTR-3UTR	ENST00000465772	ENST00000295633		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
3UTR-intron	ENST00000465772	ENST00000424703		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
3UTR-intron	ENST00000465772	ENST00000485968		ChiTaRS3.1			CB051970	RAB18	chr10	27821466	+	FSTL1	chr3	120113752	-
intron-intron	ENST00000391918	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000391918	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-3UTR	ENST00000291295	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000597743	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000477244	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000598871	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000594523	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-3UTR	ENST00000599839	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000400968		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000596362	ENST00000432079		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000460715		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000416058		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367446		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367445		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367444		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367443		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367441		ChiTaRS3.1			BQ327040	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
5CDS-3UTR	ENST00000360289	ENST00000361445		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000360289	ENST00000376838		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-intron	ENST00000360289	ENST00000495435		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000448642	ENST00000361445		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000448642	ENST00000376838		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-intron	ENST00000448642	ENST00000495435		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000404387	ENST00000361445		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000404387	ENST00000376838		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-intron	ENST00000404387	ENST00000495435		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000298649	ENST00000361445		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000298649	ENST00000376838		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-intron	ENST00000298649	ENST00000495435		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000359426	ENST00000361445		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-3UTR	ENST00000359426	ENST00000376838		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
5CDS-intron	ENST00000359426	ENST00000495435		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
3UTR-3UTR	ENST00000494253	ENST00000361445		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
3UTR-3UTR	ENST00000494253	ENST00000376838		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
3UTR-intron	ENST00000494253	ENST00000495435		ChiTaRS3.1			BE149450	HK1	chr10	71139645	-	MTOR	chr1	11167074	+
3UTR-intron	ENST00000336615	ENST00000422819		ChiTaRS3.1			BQ446930	PNPLA2	chr11	825124	-	CCDC162P	chr6	109669342	-
intron-3UTR	ENST00000512055	ENST00000347159		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000512055	ENST00000376588		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000429747	ENST00000347159		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000429747	ENST00000376588		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000512332	ENST00000347159		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000512332	ENST00000376588		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000511604	ENST00000347159		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000511604	ENST00000376588		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000502818	ENST00000347159		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000502818	ENST00000376588		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000503204	ENST00000347159		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000503204	ENST00000376588		ChiTaRS3.1			BF989450	CPNE4	chr3	131966685	+	PSAT1	chr9	80944321	-
intron-3UTR	ENST00000342160	ENST00000357461		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000342160	ENST00000557006		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000262854	ENST00000357461		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000262854	ENST00000557006		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000474288	ENST00000357461		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000474288	ENST00000557006		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000218328	ENST00000357461		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-3UTR	ENST00000218328	ENST00000557006		ChiTaRS3.1			BF803030	HUWE1	chrX	53566730	-	TMEM229B	chr14	67938980	-
intron-5UTR	ENST00000313368	ENST00000442283		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000318218		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000522463		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000521420		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000347377		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000377576		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000541131		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-5UTR	ENST00000313368	ENST00000435847		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-intron	ENST00000313368	ENST00000520960		ChiTaRS3.1			BF089910	TAF7	chr5	140698972	-	CYFIP2	chr5	156747725	-
intron-intron	ENST00000376300	ENST00000281081		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000376300	ENST00000536705		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000376300	ENST00000418681		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000319432	ENST00000281081		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000319432	ENST00000536705		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000319432	ENST00000418681		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000460781	ENST00000281081		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000460781	ENST00000536705		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000460781	ENST00000418681		ChiTaRS3.1			BF817500	CCDC93	chr2	118718818	-	NUBPL	chr14	32214963	-
intron-intron	ENST00000452313	ENST00000253457		ChiTaRS3.1			AW275140	NPIPB7	chr16	28950585	-	EMC8	chr16	85831053	+
intron-intron	ENST00000452313	ENST00000435200		ChiTaRS3.1			AW275140	NPIPB7	chr16	28950585	-	EMC8	chr16	85831053	+
intron-intron	ENST00000396821	ENST00000216014		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000396821	ENST00000409006		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000396821	ENST00000471268		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000444597	ENST00000216014		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000444597	ENST00000409006		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000444597	ENST00000471268		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000381633	ENST00000216014		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000381633	ENST00000409006		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000381633	ENST00000471268		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000432525	ENST00000216014		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000432525	ENST00000409006		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000432525	ENST00000471268		ChiTaRS3.1			BU169550	DDX17	chr22	38879649	+	KDELR3	chr22	38879538	-
intron-intron	ENST00000367178	ENST00000576409		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367178	ENST00000574428		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367178	ENST00000371937		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367178	ENST00000542495		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367178	ENST00000329231		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367178	ENST00000532925		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367178	ENST00000525633		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000576409		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000574428		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000371937		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000542495		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000329231		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000532925		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000461219	ENST00000525633		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000576409		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000574428		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000371937		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000542495		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000329231		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000532925		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000417268	ENST00000525633		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000576409		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000574428		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000371937		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000542495		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000329231		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000532925		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000367186	ENST00000525633		ChiTaRS3.1			CV399120	SCAF8	chr6	155057705	-	ATPAF1	chr1	47287388	-
intron-intron	ENST00000454800	ENST00000390168		ChiTaRS3.1			BG008580	SLC37A1	chr21	43985581	-	H19	chr11	2018305	-
intron-intron	ENST00000398341	ENST00000390168		ChiTaRS3.1			BG008580	SLC37A1	chr21	43985581	-	H19	chr11	2018305	-
intron-intron	ENST00000352133	ENST00000390168		ChiTaRS3.1			BG008580	SLC37A1	chr21	43985581	-	H19	chr11	2018305	-
intron-intron	ENST00000295633	ENST00000295633		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000295633	ENST00000424703		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000295633	ENST00000485968		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000424703	ENST00000295633		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000424703	ENST00000424703		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000424703	ENST00000485968		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000485968	ENST00000295633		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000485968	ENST00000424703		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-intron	ENST00000485968	ENST00000485968		ChiTaRS3.1			DA812650	FSTL1	chr3	120145698	-	FSTL1	chr3	120156651	-
intron-3UTR	ENST00000434271	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000434271	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000434271	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000434271	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000434271	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000434271	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000434271	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000434271	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000434271	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000434271	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000353047	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000353047	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000353047	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000353047	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000530640	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000530640	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000530640	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000530640	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000531089	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000531089	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000531089	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000531089	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000453527	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000453527	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000453527	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000453527	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000415599	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000415599	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000415599	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000415599	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000345125	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000345125	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000345125	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000345125	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000533455	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000533455	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000533455	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000533455	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-intron	ENST00000534510	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-intron	ENST00000534510	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-3UTR	ENST00000534510	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
5CDS-intron	ENST00000534510	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000434271		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000353047		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000525076	ENST00000530640		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000525076	ENST00000531089		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000453527		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000415599		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000345125		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000533455		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000525076	ENST00000534510		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-intron	ENST00000525076	ENST00000525076		ChiTaRS3.1			BF831500	CTSB	chr8	11701874	-	CTSB	chr8	11702107	+
intron-3UTR	ENST00000512215	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000512215	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000512215	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000512215	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000512215	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000512215	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394854	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394854	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000394854	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394854	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394854	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000394854	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000323055	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000323055	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000323055	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000323055	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000323055	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000323055	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394853	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394853	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000394853	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394853	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000394853	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000394853	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000507176	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000507176	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000507176	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000507176	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000507176	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000507176	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000523694	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000523694	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000523694	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000523694	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000523694	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000523694	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000510292	ENST00000578681		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000510292	ENST00000583590		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000510292	ENST00000359353		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000510292	ENST00000389924		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000510292	ENST00000457800		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-intron	ENST00000510292	ENST00000582985		ChiTaRS3.1			AW800680	PPP3CA	chr4	102096367	+	DDX42	chr17	61896513	-
intron-3UTR	ENST00000379251	ENST00000223095		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
intron-3UTR	ENST00000379251	ENST00000445463		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
intron-3UTR	ENST00000379253	ENST00000223095		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
intron-3UTR	ENST00000379253	ENST00000445463		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
3UTR-3UTR	ENST00000379254	ENST00000223095		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
3UTR-3UTR	ENST00000379254	ENST00000445463		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
3UTR-3UTR	ENST00000379270	ENST00000223095		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
3UTR-3UTR	ENST00000379270	ENST00000445463		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
3UTR-3UTR	ENST00000489394	ENST00000223095		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
3UTR-3UTR	ENST00000489394	ENST00000445463		ChiTaRS3.1			BE765420	SAT1	chrX	23804055	-	SERPINE1	chr7	100781547	-
intron-intron	ENST00000426838	ENST00000348943		ChiTaRS3.1			BF854890	SETBP1	chr18	42514544	-	HNRNPM	chr19	8549011	-
intron-intron	ENST00000426838	ENST00000325495		ChiTaRS3.1			BF854890	SETBP1	chr18	42514544	-	HNRNPM	chr19	8549011	-
intron-intron	ENST00000426838	ENST00000602219		ChiTaRS3.1			BF854890	SETBP1	chr18	42514544	-	HNRNPM	chr19	8549011	-
intron-intron	ENST00000282030	ENST00000348943		ChiTaRS3.1			BF854890	SETBP1	chr18	42514544	-	HNRNPM	chr19	8549011	-
intron-intron	ENST00000282030	ENST00000325495		ChiTaRS3.1			BF854890	SETBP1	chr18	42514544	-	HNRNPM	chr19	8549011	-
intron-intron	ENST00000282030	ENST00000602219		ChiTaRS3.1			BF854890	SETBP1	chr18	42514544	-	HNRNPM	chr19	8549011	-
intron-intron	ENST00000384838	ENST00000384838		ChiTaRS3.1			AI687160	LINC00461	chr5	87960592	+	LINC00461	chr5	87960692	-
intron-intron	ENST00000398344	ENST00000560302		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000398344	ENST00000394518		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000398344	ENST00000361243		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000398344	ENST00000560579		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000398344	ENST00000394510		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000350608	ENST00000560302		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000350608	ENST00000394518		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000350608	ENST00000361243		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000350608	ENST00000560579		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000350608	ENST00000394510		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000404092	ENST00000560302		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000404092	ENST00000394518		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000404092	ENST00000361243		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000404092	ENST00000560579		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000404092	ENST00000394510		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000403754	ENST00000560302		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000403754	ENST00000394518		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000403754	ENST00000361243		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000403754	ENST00000560579		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000403754	ENST00000394510		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000430101	ENST00000560302		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000430101	ENST00000394518		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000430101	ENST00000361243		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-intron	ENST00000430101	ENST00000560579		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
intron-3UTR	ENST00000430101	ENST00000394510		ChiTaRS3.1			AI289930	DDT	chr22	24313764	+	AKAP13	chr15	86291745	-
3UTR-intron	ENST00000393892	ENST00000366835		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000393892	ENST00000474478		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000393892	ENST00000537914		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000472031	ENST00000366835		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000472031	ENST00000474478		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000472031	ENST00000537914		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000591072	ENST00000366835		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000591072	ENST00000474478		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000591072	ENST00000537914		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
intron-intron	ENST00000592446	ENST00000366835		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
intron-intron	ENST00000592446	ENST00000474478		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
intron-intron	ENST00000592446	ENST00000537914		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000393888	ENST00000366835		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000393888	ENST00000474478		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000393888	ENST00000537914		ChiTaRS3.1			BF932710	CNP	chr17	40126205	-	TMEM63A	chr1	226054568	+
3UTR-intron	ENST00000310074	ENST00000404039		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000310074	ENST00000406326		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000310074	ENST00000377770		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000310074	ENST00000332007		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000310074	ENST00000496611		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000310074	ENST00000427557		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-intron	ENST00000512388	ENST00000404039		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-intron	ENST00000512388	ENST00000406326		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-intron	ENST00000512388	ENST00000377770		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-intron	ENST00000512388	ENST00000332007		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-intron	ENST00000512388	ENST00000496611		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-intron	ENST00000512388	ENST00000427557		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000515646	ENST00000404039		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000515646	ENST00000406326		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000515646	ENST00000377770		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000515646	ENST00000332007		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000515646	ENST00000496611		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
3UTR-intron	ENST00000515646	ENST00000427557		ChiTaRS3.1			AW899150	TADA2B	chr4	7057944	-	DPP6	chr7	154023545	-
intron-3CDS	ENST00000340573	ENST00000340573		ChiTaRS3.1			AA502470	UBE2L6	chr11	57319139	-	UBE2L6	chr11	57319912	+
intron-3CDS	ENST00000340573	ENST00000287156		ChiTaRS3.1			AA502470	UBE2L6	chr11	57319139	-	UBE2L6	chr11	57319912	+
In-frame	ENST00000287156	ENST00000340573		ChiTaRS3.1			AA502470	UBE2L6	chr11	57319139	-	UBE2L6	chr11	57319912	+
In-frame	ENST00000287156	ENST00000287156		ChiTaRS3.1			AA502470	UBE2L6	chr11	57319139	-	UBE2L6	chr11	57319912	+
intron-3UTR	ENST00000302351	ENST00000302351		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000302351	ENST00000510316		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000302351	ENST00000509284		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000302351	ENST00000537006		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000510316	ENST00000302351		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000510316	ENST00000510316		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000510316	ENST00000509284		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000510316	ENST00000537006		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000509284	ENST00000302351		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000509284	ENST00000510316		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000509284	ENST00000509284		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000509284	ENST00000537006		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000537006	ENST00000302351		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-3UTR	ENST00000537006	ENST00000510316		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000537006	ENST00000509284		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-intron	ENST00000537006	ENST00000537006		ChiTaRS3.1			AA593360	ENC1	chr5	73923339	-	ENC1	chr5	73923617	+
intron-5UTR	ENST00000343638	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000343638		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000302904		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000527034		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000533177		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000436088		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000393606		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000529383		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000526094		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000537550		ChiTaRS3.1			X53390	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-intron	ENST00000339656	ENST00000318522		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000339656	ENST00000402711		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000339656	ENST00000482660		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000339656	ENST00000401738		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000339656	ENST00000453191		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000423137	ENST00000318522		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000423137	ENST00000402711		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000423137	ENST00000482660		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000423137	ENST00000401738		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000423137	ENST00000453191		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000419854	ENST00000318522		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000419854	ENST00000402711		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000419854	ENST00000482660		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000419854	ENST00000401738		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000419854	ENST00000453191		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000596433	ENST00000318522		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000596433	ENST00000402711		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000596433	ENST00000482660		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000596433	ENST00000401738		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-intron	ENST00000596433	ENST00000453191		ChiTaRS3.1			BF929270	ZNF587	chr19	58328256	-	EML4	chr2	42419365	+
intron-3CDS	ENST00000234590	ENST00000346798		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000354192		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000348990		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000357903		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000358918		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000359726		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000448388		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000440126		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000439274		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-intron	ENST00000234590	ENST00000474136		ChiTaRS3.1			AW074340	ENO1	chr1	8921220	+	APP	chr21	27253998	+
intron-3CDS	ENST00000234590	ENST00000234590		ChiTaRS3.1			CA419890	ENO1	chr1	8924001	+	ENO1	chr1	8926377	-
Frame-shit	ENST00000225927	ENST00000253083		ChiTaRS3.1			AB209530	NAGLU	chr17	40696179	+	HIP1R	chr12	123345942	-
5CDS-intron	ENST00000225927	ENST00000537322		ChiTaRS3.1			AB209530	NAGLU	chr17	40696179	+	HIP1R	chr12	123345942	-
3UTR-intron	ENST00000263097	ENST00000375664		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000263097	ENST00000375646		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000263097	ENST00000347934		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000263097	ENST00000354911		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000263097	ENST00000428935		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000263097	ENST00000532233		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000606983	ENST00000375664		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000606983	ENST00000375646		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000606983	ENST00000347934		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000606983	ENST00000354911		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000606983	ENST00000428935		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000606983	ENST00000532233		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000348419	ENST00000375664		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000348419	ENST00000375646		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000348419	ENST00000347934		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000348419	ENST00000354911		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000348419	ENST00000428935		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
3UTR-intron	ENST00000348419	ENST00000532233		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000565096	ENST00000375664		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000565096	ENST00000375646		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000565096	ENST00000347934		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000565096	ENST00000354911		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000565096	ENST00000428935		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000565096	ENST00000532233		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000562958	ENST00000375664		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000562958	ENST00000375646		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000562958	ENST00000347934		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000562958	ENST00000354911		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000562958	ENST00000428935		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-intron	ENST00000562958	ENST00000532233		ChiTaRS3.1			BQ004560	CNN2	chr19	1038780	-	WAC	chr10	28907931	-
intron-3UTR	ENST00000374807	ENST00000336798		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000374807	ENST00000339394		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000374807	ENST00000471567		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-3UTR	ENST00000374811	ENST00000336798		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000374811	ENST00000339394		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000374811	ENST00000471567		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-3UTR	ENST00000374804	ENST00000336798		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000374804	ENST00000339394		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000374804	ENST00000471567		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-3UTR	ENST00000312391	ENST00000336798		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000312391	ENST00000339394		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-intron	ENST00000312391	ENST00000471567		ChiTaRS3.1			BF935530	LAS1L	chrX	64739256	+	SDC3	chr1	31345192	+
intron-3CDS	ENST00000319622	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000319622	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000565184	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000565184	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000389093	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000389093	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000335181	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000335181	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000568883	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000568883	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000449901	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000449901	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000565154	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000565154	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000568459	ENST00000320634		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
intron-3CDS	ENST00000568459	ENST00000550890		ChiTaRS3.1			AK098360	PKM	chr15	72502078	+	FAIM2	chr12	50283340	-
3UTR-3CDS	ENST00000253024	ENST00000253024		ChiTaRS3.1			CN422430	TRIM28	chr19	59062013	+	TRIM28	chr19	59061135	+
3UTR-3CDS	ENST00000253024	ENST00000341753		ChiTaRS3.1			CN422430	TRIM28	chr19	59062013	+	TRIM28	chr19	59061135	+
3UTR-3CDS	ENST00000341753	ENST00000253024		ChiTaRS3.1			CN422430	TRIM28	chr19	59062013	+	TRIM28	chr19	59061135	+
3UTR-3CDS	ENST00000341753	ENST00000341753		ChiTaRS3.1			CN422430	TRIM28	chr19	59062013	+	TRIM28	chr19	59061135	+
intron-3UTR	ENST00000469100	ENST00000375759		ChiTaRS3.1			AA165670	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000469100	ENST00000471538		ChiTaRS3.1			AA165670	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-3UTR	ENST00000373477	ENST00000375759		ChiTaRS3.1			AA165670	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000373477	ENST00000471538		ChiTaRS3.1			AA165670	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-3CDS	ENST00000542434	ENST00000435803		ChiTaRS3.1			BF895730	ALOX5	chr10	45922292	-	ABCA13	chr7	48654939	-
intron-3CDS	ENST00000542434	ENST00000544596		ChiTaRS3.1			BF895730	ALOX5	chr10	45922292	-	ABCA13	chr7	48654939	-
intron-3CDS	ENST00000374391	ENST00000435803		ChiTaRS3.1			BF895730	ALOX5	chr10	45922292	-	ABCA13	chr7	48654939	-
intron-3CDS	ENST00000374391	ENST00000544596		ChiTaRS3.1			BF895730	ALOX5	chr10	45922292	-	ABCA13	chr7	48654939	-
intron-3CDS	ENST00000493336	ENST00000435803		ChiTaRS3.1			BF895730	ALOX5	chr10	45922292	-	ABCA13	chr7	48654939	-
intron-3CDS	ENST00000493336	ENST00000544596		ChiTaRS3.1			BF895730	ALOX5	chr10	45922292	-	ABCA13	chr7	48654939	-
3UTR-intron	ENST00000167106	ENST00000601415		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
3UTR-intron	ENST00000167106	ENST00000325134		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
3UTR-intron	ENST00000167106	ENST00000457177		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
3UTR-intron	ENST00000167106	ENST00000506609		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554237	ENST00000601415		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554237	ENST00000325134		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554237	ENST00000457177		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554237	ENST00000506609		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000556038	ENST00000601415		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000556038	ENST00000325134		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000556038	ENST00000457177		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000556038	ENST00000506609		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554743	ENST00000601415		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554743	ENST00000325134		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554743	ENST00000457177		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-intron	ENST00000554743	ENST00000506609		ChiTaRS3.1			AA977090	VASH1	chr14	77248132	+	ZNF550	chr19	58067569	+
intron-3UTR	ENST00000311669	ENST00000311669		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-3UTR	ENST00000311669	ENST00000456471		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-intron	ENST00000311669	ENST00000567733		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-3UTR	ENST00000456471	ENST00000311669		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-3UTR	ENST00000456471	ENST00000456471		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-intron	ENST00000456471	ENST00000567733		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-3UTR	ENST00000567733	ENST00000311669		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-3UTR	ENST00000567733	ENST00000456471		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-intron	ENST00000567733	ENST00000567733		ChiTaRS3.1			BM728660	ADPGK	chr15	73044426	+	ADPGK	chr15	73044555	-
intron-3CDS	ENST00000348547	ENST00000348547		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000348547	ENST00000357394		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000348547	ENST00000279052		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000348547	ENST00000447986		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000348547	ENST00000482338		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000348547		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000357394		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000279052		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000447986		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000357394	ENST00000482338		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000348547		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000357394		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000279052		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000447986		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000279052	ENST00000482338		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000348547		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000357394		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000279052		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000447986		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000447986	ENST00000482338		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000348547		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000357394		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000279052		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000447986		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000482338	ENST00000482338		ChiTaRS3.1			BI039060	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000431446	ENST00000431446		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000496459		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000570135		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000320676		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000562646		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000565438		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000431446		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000496459		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000570135		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000320676		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000562646		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000565438		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000431446		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000496459		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000570135		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000320676		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000562646		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000565438		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000431446		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000496459		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000570135		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000320676		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000562646		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000565438		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000431446		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000496459		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000570135		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000320676		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000562646		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000565438		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000431446		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000496459		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000570135		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000320676		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000562646		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000565438		ChiTaRS3.1			AA460960	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000554914	ENST00000544892		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000554914	ENST00000320031		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000554914	ENST00000007722		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000553390	ENST00000544892		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000553390	ENST00000320031		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000553390	ENST00000007722		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000304501	ENST00000544892		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000304501	ENST00000320031		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000304501	ENST00000007722		ChiTaRS3.1			BE149790	SOX7	chr8	10583281	+	ITGA3	chr17	48140943	-
intron-intron	ENST00000379542	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379542	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379542	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379542	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379542	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379542	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000491103	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000491103	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000491103	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000491103	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000491103	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000491103	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000461342	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000461342	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000461342	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000461342	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000461342	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000461342	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000475942	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000475942	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000475942	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000475942	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000475942	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000475942	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379530	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379530	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379530	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379530	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379530	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000379530	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000473276	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000473276	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000473276	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000473276	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000473276	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000473276	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000481240	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000481240	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000481240	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000481240	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000481240	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000481240	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000467317	ENST00000341394		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000467317	ENST00000389645		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000467317	ENST00000532820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000467317	ENST00000530820		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000467317	ENST00000529307		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000467317	ENST00000533657		ChiTaRS3.1			BM153330	TMEM14B	chr6	10748501	+	CAPRIN1	chr11	34197541	-
3UTR-intron	ENST00000588304	ENST00000586448		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000588304	ENST00000255226		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000588304	ENST00000589658		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000588485	ENST00000586448		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000588485	ENST00000255226		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000588485	ENST00000589658		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000591403	ENST00000586448		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000591403	ENST00000255226		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000591403	ENST00000589658		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000586696	ENST00000586448		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000586696	ENST00000255226		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000586696	ENST00000589658		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000252669	ENST00000586448		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000252669	ENST00000255226		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000252669	ENST00000589658		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000591741	ENST00000586448		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000591741	ENST00000255226		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
3UTR-intron	ENST00000591741	ENST00000589658		ChiTaRS3.1			AA868830	ACSBG2	chr19	6192924	-	SLC14A2	chr18	43073172	-
intron-3CDS	ENST00000605573	ENST00000169298		ChiTaRS3.1			BM919650	LPP-AS2	chr3	187871809	+	ST6GAL1	chr3	186790631	+
intron-3CDS	ENST00000605573	ENST00000457772		ChiTaRS3.1			BM919650	LPP-AS2	chr3	187871809	+	ST6GAL1	chr3	186790631	+
intron-3CDS	ENST00000605573	ENST00000448044		ChiTaRS3.1			BM919650	LPP-AS2	chr3	187871809	+	ST6GAL1	chr3	186790631	+
intron-intron	ENST00000605573	ENST00000487031		ChiTaRS3.1			BM919650	LPP-AS2	chr3	187871809	+	ST6GAL1	chr3	186790631	+
intron-3UTR	ENST00000245907	ENST00000268171		ChiTaRS3.1			CB163740	C3	chr19	6677984	+	FURIN	chr15	91425918	+
intron-3UTR	ENST00000599668	ENST00000268171		ChiTaRS3.1			CB163740	C3	chr19	6677984	+	FURIN	chr15	91425918	+
Frame-shit	ENST00000314358	ENST00000314358		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
Frame-shit	ENST00000314358	ENST00000394866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
5CDS-intron	ENST00000314358	ENST00000542866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
5CDS-intron	ENST00000314358	ENST00000508386		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
Frame-shit	ENST00000394866	ENST00000314358		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
Frame-shit	ENST00000394866	ENST00000394866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
5CDS-intron	ENST00000394866	ENST00000542866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
5CDS-intron	ENST00000394866	ENST00000508386		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-3CDS	ENST00000542866	ENST00000314358		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-3CDS	ENST00000542866	ENST00000394866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-intron	ENST00000542866	ENST00000542866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-intron	ENST00000542866	ENST00000508386		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-3CDS	ENST00000508386	ENST00000314358		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-3CDS	ENST00000508386	ENST00000394866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-intron	ENST00000508386	ENST00000542866		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-intron	ENST00000508386	ENST00000508386		ChiTaRS3.1			BQ308590	KDM3B	chr5	137726928	-	KDM3B	chr5	137722245	+
intron-intron	ENST00000373433	ENST00000432069		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000373433	ENST00000564053		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000373433	ENST00000568199		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000373433	ENST00000268605		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000373433	ENST00000568146		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000471511	ENST00000432069		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000471511	ENST00000564053		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000471511	ENST00000568199		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000471511	ENST00000268605		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000471511	ENST00000568146		ChiTaRS3.1			BI053870	RPRD1B	chr20	36716737	-	NOL3	chr16	67205510	-
intron-intron	ENST00000396420	ENST00000396420		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000396420	ENST00000371984		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000396420	ENST00000371992		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000396420	ENST00000535522		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000396420	ENST00000371986		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000396420	ENST00000485714		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371984	ENST00000396420		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371984	ENST00000371984		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371984	ENST00000371992		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371984	ENST00000535522		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371984	ENST00000371986		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371984	ENST00000485714		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371992	ENST00000396420		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371992	ENST00000371984		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371992	ENST00000371992		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371992	ENST00000535522		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371992	ENST00000371986		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371992	ENST00000485714		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000535522	ENST00000396420		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000535522	ENST00000371984		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000535522	ENST00000371992		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000535522	ENST00000535522		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000535522	ENST00000371986		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000535522	ENST00000485714		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371986	ENST00000396420		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371986	ENST00000371984		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371986	ENST00000371992		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371986	ENST00000535522		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371986	ENST00000371986		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000371986	ENST00000485714		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000485714	ENST00000396420		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000485714	ENST00000371984		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000485714	ENST00000371992		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000485714	ENST00000535522		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000485714	ENST00000371986		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000485714	ENST00000485714		ChiTaRS3.1			AK026430	POMGNT1	chr1	46656657	-	POMGNT1	chr1	46663779	-
intron-intron	ENST00000524325	ENST00000444746		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000524325	ENST00000453091		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000524325	ENST00000428287		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-3UTR	ENST00000524325	ENST00000243326		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000524325	ENST00000430328		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000524325	ENST00000433166		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000524325	ENST00000457745		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000307180	ENST00000444746		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000307180	ENST00000453091		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000307180	ENST00000428287		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-3UTR	ENST00000307180	ENST00000243326		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000307180	ENST00000430328		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000307180	ENST00000433166		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000307180	ENST00000457745		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000520166	ENST00000444746		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000520166	ENST00000453091		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000520166	ENST00000428287		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-3UTR	ENST00000520166	ENST00000243326		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000520166	ENST00000430328		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000520166	ENST00000433166		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000520166	ENST00000457745		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000519651	ENST00000444746		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000519651	ENST00000453091		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000519651	ENST00000428287		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-3UTR	ENST00000519651	ENST00000243326		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000519651	ENST00000430328		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000519651	ENST00000433166		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000519651	ENST00000457745		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000518928	ENST00000444746		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000518928	ENST00000453091		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000518928	ENST00000428287		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-3UTR	ENST00000518928	ENST00000243326		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000518928	ENST00000430328		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000518928	ENST00000433166		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
intron-intron	ENST00000518928	ENST00000457745		ChiTaRS3.1			U25770	TSNARE1	chr8	143351500	+	RIF1	chr2	152333352	+
5CDS-intron	ENST00000321556	ENST00000321556		ChiTaRS3.1			CV340510	PINK1	chr1	20966396	+	PINK1	chr1	20965323	+
5CDS-3UTR	ENST00000321556	ENST00000492302		ChiTaRS3.1			CV340510	PINK1	chr1	20966396	+	PINK1	chr1	20965323	+
3UTR-intron	ENST00000492302	ENST00000321556		ChiTaRS3.1			CV340510	PINK1	chr1	20966396	+	PINK1	chr1	20965323	+
3UTR-3UTR	ENST00000492302	ENST00000492302		ChiTaRS3.1			CV340510	PINK1	chr1	20966396	+	PINK1	chr1	20965323	+
5CDS-intron	ENST00000562057	ENST00000459937		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000562057	ENST00000424142		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000562057	ENST00000393114		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000562057	ENST00000430372		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-intron	ENST00000562057	ENST00000483029		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-intron	ENST00000344051	ENST00000459937		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000344051	ENST00000424142		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000344051	ENST00000393114		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000344051	ENST00000430372		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-intron	ENST00000344051	ENST00000483029		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-intron	ENST00000431806	ENST00000459937		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000431806	ENST00000424142		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000431806	ENST00000393114		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-3UTR	ENST00000431806	ENST00000430372		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
5CDS-intron	ENST00000431806	ENST00000483029		ChiTaRS3.1			BI004880	SPINT1	chr15	41146033	+	C7orf49	chr7	134850984	-
intron-3UTR	ENST00000278379	ENST00000278379		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000278379	ENST00000395750		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000278379	ENST00000395753		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000278379	ENST00000606205		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000278379	ENST00000479543		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000395750	ENST00000278379		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000395750	ENST00000395750		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000395750	ENST00000395753		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000395750	ENST00000606205		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000395750	ENST00000479543		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000395753	ENST00000278379		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000395753	ENST00000395750		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000395753	ENST00000395753		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000395753	ENST00000606205		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000395753	ENST00000479543		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000606205	ENST00000278379		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000606205	ENST00000395750		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000606205	ENST00000395753		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000606205	ENST00000606205		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000606205	ENST00000479543		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000479543	ENST00000278379		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000479543	ENST00000395750		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3UTR	ENST00000479543	ENST00000395753		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000479543	ENST00000606205		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-intron	ENST00000479543	ENST00000479543		ChiTaRS3.1			BF945510	SLC1A2	chr11	35274000	+	SLC1A2	chr11	35273514	+
intron-3CDS	ENST00000316292	ENST00000441310		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000316292	ENST00000418224		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000316292	ENST00000409823		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000316292	ENST00000421722		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000316292	ENST00000447232		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000316292	ENST00000432292		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000316292	ENST00000409985		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000316292	ENST00000374826		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000491404	ENST00000441310		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000491404	ENST00000418224		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000491404	ENST00000409823		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000491404	ENST00000421722		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000491404	ENST00000447232		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000491404	ENST00000432292		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000491404	ENST00000409985		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000491404	ENST00000374826		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000309268	ENST00000441310		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000309268	ENST00000418224		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000309268	ENST00000409823		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000309268	ENST00000421722		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000309268	ENST00000447232		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000309268	ENST00000432292		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000309268	ENST00000409985		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000309268	ENST00000374826		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000331523	ENST00000441310		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-3CDS	ENST00000331523	ENST00000418224		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000331523	ENST00000409823		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000331523	ENST00000421722		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000331523	ENST00000447232		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000331523	ENST00000432292		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000331523	ENST00000409985		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000331523	ENST00000374826		ChiTaRS3.1			AY540750	EEF1A1	chr6	74227955	-	PMS1	chr2	190708702	+
intron-intron	ENST00000607252	ENST00000367942		ChiTaRS3.1			BF946220	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000607252	ENST00000476437		ChiTaRS3.1			BF946220	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000318149	ENST00000367942		ChiTaRS3.1			BF946220	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000318149	ENST00000476437		ChiTaRS3.1			BF946220	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000361428	ENST00000367942		ChiTaRS3.1			BF946220	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000361428	ENST00000476437		ChiTaRS3.1			BF946220	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
3UTR-intron	ENST00000356093	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000356093	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000356093	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000398863	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000398863	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000398863	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000343067	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000343067	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000343067	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000349460	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000349460	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000349460	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373800	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373800	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373800	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000347529	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000347529	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000347529	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000373798	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000373798	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000373798	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373797	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373797	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373797	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000460378	ENST00000311862		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000460378	ENST00000533605		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000460378	ENST00000525955		ChiTaRS3.1			AF118070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000295824	ENST00000253861		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000295824	ENST00000539845		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000295824	ENST00000393161		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000295824	ENST00000545148		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000295824	ENST00000460346		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000295824	ENST00000541309		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000344838	ENST00000253861		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000344838	ENST00000539845		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000344838	ENST00000393161		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000344838	ENST00000545148		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000344838	ENST00000460346		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000344838	ENST00000541309		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000498089	ENST00000253861		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000498089	ENST00000539845		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000498089	ENST00000393161		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000498089	ENST00000545148		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000498089	ENST00000460346		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
intron-intron	ENST00000498089	ENST00000541309		ChiTaRS3.1			BE182340	EFHB	chr3	19941587	+	EXOC4	chr7	133530842	-
In-frame	ENST00000452898	ENST00000452898		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
In-frame	ENST00000452898	ENST00000286364		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
5CDS-intron	ENST00000452898	ENST00000509118		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
In-frame	ENST00000286364	ENST00000452898		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
In-frame	ENST00000286364	ENST00000286364		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
5CDS-intron	ENST00000286364	ENST00000509118		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
intron-3CDS	ENST00000509118	ENST00000452898		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
intron-3CDS	ENST00000509118	ENST00000286364		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
intron-intron	ENST00000509118	ENST00000509118		ChiTaRS3.1			BF748340	RASA2	chr3	141290314	+	RASA2	chr3	141289895	-
intron-intron	ENST00000379162	ENST00000379162		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000379162	ENST00000441463		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000379162	ENST00000493226		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000441463	ENST00000379162		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000441463	ENST00000441463		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000441463	ENST00000493226		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000493226	ENST00000379162		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000493226	ENST00000441463		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-intron	ENST00000493226	ENST00000493226		ChiTaRS3.1			AV755280	PDK3	chrX	24518622	+	PDK3	chrX	24517518	+
intron-3UTR	ENST00000037869	ENST00000037869		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-intron	ENST00000037869	ENST00000450256		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-intron	ENST00000037869	ENST00000430566		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-3UTR	ENST00000450256	ENST00000037869		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-intron	ENST00000450256	ENST00000450256		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-intron	ENST00000450256	ENST00000430566		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-3UTR	ENST00000430566	ENST00000037869		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-intron	ENST00000430566	ENST00000450256		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-intron	ENST00000430566	ENST00000430566		ChiTaRS3.1			AA662580	FAM136A	chr2	70523250	-	FAM136A	chr2	70523123	+
intron-3CDS	ENST00000565698	ENST00000565698		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000565698	ENST00000304658		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-5UTR	ENST00000565698	ENST00000561488		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000304658	ENST00000565698		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000304658	ENST00000304658		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-5UTR	ENST00000304658	ENST00000561488		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000561488	ENST00000565698		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000561488	ENST00000304658		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-5UTR	ENST00000561488	ENST00000561488		ChiTaRS3.1			BF353460	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000395146	ENST00000367584		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000395146	ENST00000427704		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000395146	ENST00000305766		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000395146	ENST00000440869		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000395146	ENST00000367582		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-intron	ENST00000395146	ENST00000397980		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000307808	ENST00000367584		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000307808	ENST00000427704		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000307808	ENST00000305766		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000307808	ENST00000440869		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000307808	ENST00000367582		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-intron	ENST00000307808	ENST00000397980		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000544085	ENST00000367584		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000544085	ENST00000427704		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000544085	ENST00000305766		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000544085	ENST00000440869		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000544085	ENST00000367582		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-intron	ENST00000544085	ENST00000397980		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000511996	ENST00000367584		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000511996	ENST00000427704		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000511996	ENST00000305766		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000511996	ENST00000440869		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-3CDS	ENST00000511996	ENST00000367582		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
intron-intron	ENST00000511996	ENST00000397980		ChiTaRS3.1			BE929030	AFF1	chr4	87900630	+	PHACTR2	chr6	144086772	-
5CDS-intron	ENST00000558401	ENST00000419152		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000532400		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000532741		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000317198		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000526838		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000442189		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000528610		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000423316		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000395119		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000529272		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000531621		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000524624		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000531770		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000419152		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000532400		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000532741		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000317198		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000526838		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000442189		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000528610		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000423316		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000395119		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000529272		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000531621		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000524624		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000531770		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000419152		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000532400		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000532741		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000317198		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000526838		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000442189		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000528610		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000423316		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000395119		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000529272		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000531621		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000524624		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000531770		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000419152		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000532400		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000532741		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000317198		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000526838		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000442189		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000528610		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000423316		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000395119		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000529272		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000531621		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000524624		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000531770		ChiTaRS3.1			BG545390	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-3CDS	ENST00000318024	ENST00000318024		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000318024	ENST00000527020		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000318024	ENST00000005226		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000318024	ENST00000527720		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-intron	ENST00000318024	ENST00000529563		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527020	ENST00000318024		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527020	ENST00000527020		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527020	ENST00000005226		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527020	ENST00000527720		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-intron	ENST00000527020	ENST00000529563		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000005226	ENST00000318024		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000005226	ENST00000527020		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000005226	ENST00000005226		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000005226	ENST00000527720		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-intron	ENST00000005226	ENST00000529563		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527720	ENST00000318024		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527720	ENST00000527020		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527720	ENST00000005226		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000527720	ENST00000527720		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-intron	ENST00000527720	ENST00000529563		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000529563	ENST00000318024		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000529563	ENST00000527020		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000529563	ENST00000005226		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-3CDS	ENST00000529563	ENST00000527720		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-intron	ENST00000529563	ENST00000529563		ChiTaRS3.1			W22160	USH1C	chr11	17565916	+	USH1C	chr11	17548880	-
intron-intron	ENST00000397149	ENST00000244769		ChiTaRS3.1			BF853520	SMU1	chr9	33056970	+	ATXN1	chr6	16331157	-
intron-intron	ENST00000397149	ENST00000436367		ChiTaRS3.1			BF853520	SMU1	chr9	33056970	+	ATXN1	chr6	16331157	-
intron-intron	ENST00000397149	ENST00000467008		ChiTaRS3.1			BF853520	SMU1	chr9	33056970	+	ATXN1	chr6	16331157	-
intron-intron	ENST00000536631	ENST00000244769		ChiTaRS3.1			BF853520	SMU1	chr9	33056970	+	ATXN1	chr6	16331157	-
intron-intron	ENST00000536631	ENST00000436367		ChiTaRS3.1			BF853520	SMU1	chr9	33056970	+	ATXN1	chr6	16331157	-
intron-intron	ENST00000536631	ENST00000467008		ChiTaRS3.1			BF853520	SMU1	chr9	33056970	+	ATXN1	chr6	16331157	-
3UTR-3UTR	ENST00000254976	ENST00000254976		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000254976	ENST00000304886		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000254976	ENST00000495883		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000304886	ENST00000254976		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000304886	ENST00000304886		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000304886	ENST00000495883		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000495883	ENST00000254976		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000495883	ENST00000304886		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
3UTR-3UTR	ENST00000495883	ENST00000495883		ChiTaRS3.1			AW898620	SNAP25	chr20	10286966	-	SNAP25	chr20	10287483	+
intron-intron	ENST00000568630	ENST00000568630		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000545763		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000389936		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000219905		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000566586		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000570161		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000568630		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000545763		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000389936		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000219905		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000566586		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000570161		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000568630		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000545763		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000389936		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000219905		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000566586		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000570161		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000568630		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000545763		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000389936		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000219905		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000566586		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000570161		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000568630		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000545763		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000389936		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000219905		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000566586		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000570161		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000568630		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000545763		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000389936		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000219905		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000566586		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000570161		ChiTaRS3.1			AV747640	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000336861	ENST00000336861		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000336861	ENST00000246635		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000336861	ENST00000587544		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000336861	ENST00000587118		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000246635	ENST00000336861		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000246635	ENST00000246635		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000246635	ENST00000587544		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000246635	ENST00000587118		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587544	ENST00000336861		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587544	ENST00000246635		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587544	ENST00000587544		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587544	ENST00000587118		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587118	ENST00000336861		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587118	ENST00000246635		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587118	ENST00000587544		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
intron-intron	ENST00000587118	ENST00000587118		ChiTaRS3.1			CV314810	KRT13	chr17	39657838	+	KRT13	chr17	39657716	-
5CDS-5UTR	ENST00000521913	ENST00000248958		ChiTaRS3.1			BC010880	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
5CDS-5UTR	ENST00000311151	ENST00000248958		ChiTaRS3.1			BC010880	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
5CDS-5UTR	ENST00000523027	ENST00000248958		ChiTaRS3.1			BC010880	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
intron-5UTR	ENST00000521983	ENST00000248958		ChiTaRS3.1			BC010880	DPYSL2	chr8	26505223	+	SDF2L1	chr22	21996618	+
intron-3CDS	ENST00000368547	ENST00000368547		ChiTaRS3.1			H39530	ECHS1	chr10	135184208	+	ECHS1	chr10	135180474	-
intron-3UTR	ENST00000265174	ENST00000291547		ChiTaRS3.1			BQ302970	PAPSS1	chr4	108608320	+	PKNOX1	chr21	44450292	+
intron-3UTR	ENST00000265174	ENST00000432907		ChiTaRS3.1			BQ302970	PAPSS1	chr4	108608320	+	PKNOX1	chr21	44450292	+
intron-intron	ENST00000265174	ENST00000607150		ChiTaRS3.1			BQ302970	PAPSS1	chr4	108608320	+	PKNOX1	chr21	44450292	+
intron-3UTR	ENST00000511304	ENST00000291547		ChiTaRS3.1			BQ302970	PAPSS1	chr4	108608320	+	PKNOX1	chr21	44450292	+
intron-3UTR	ENST00000511304	ENST00000432907		ChiTaRS3.1			BQ302970	PAPSS1	chr4	108608320	+	PKNOX1	chr21	44450292	+
intron-intron	ENST00000511304	ENST00000607150		ChiTaRS3.1			BQ302970	PAPSS1	chr4	108608320	+	PKNOX1	chr21	44450292	+
In-frame	ENST00000229239	ENST00000237530		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000229239	ENST00000373622		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
5CDS-intron	ENST00000229239	ENST00000470352		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396856	ENST00000237530		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396856	ENST00000373622		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
5CDS-intron	ENST00000396856	ENST00000470352		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396861	ENST00000237530		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396861	ENST00000373622		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
5CDS-intron	ENST00000396861	ENST00000470352		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396859	ENST00000237530		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396859	ENST00000373622		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
5CDS-intron	ENST00000396859	ENST00000470352		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396858	ENST00000237530		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
In-frame	ENST00000396858	ENST00000373622		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
5CDS-intron	ENST00000396858	ENST00000470352		ChiTaRS3.1			BC009430	GAPDH	chr12	6646122	-	RPN2	chr20	35857110	+
intron-intron	ENST00000258198	ENST00000367033		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000258198	ENST00000483048		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000379482	ENST00000367033		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000379482	ENST00000483048		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000443351	ENST00000367033		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000443351	ENST00000483048		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000570201	ENST00000367033		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000570201	ENST00000483048		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000440564	ENST00000367033		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-intron	ENST00000440564	ENST00000483048		ChiTaRS3.1			BF370830	DYNC1LI2	chr16	66765479	+	PLXNA2	chr1	208335134	+
intron-3CDS	ENST00000254958	ENST00000307602		ChiTaRS3.1			AF241830	JAG1	chr20	10640788	+	HOOK3	chr8	42752274	+
intron-intron	ENST00000254958	ENST00000524839		ChiTaRS3.1			AF241830	JAG1	chr20	10640788	+	HOOK3	chr8	42752274	+
intron-3CDS	ENST00000423891	ENST00000307602		ChiTaRS3.1			AF241830	JAG1	chr20	10640788	+	HOOK3	chr8	42752274	+
intron-intron	ENST00000423891	ENST00000524839		ChiTaRS3.1			AF241830	JAG1	chr20	10640788	+	HOOK3	chr8	42752274	+
intron-3CDS	ENST00000488480	ENST00000307602		ChiTaRS3.1			AF241830	JAG1	chr20	10640788	+	HOOK3	chr8	42752274	+
intron-intron	ENST00000488480	ENST00000524839		ChiTaRS3.1			AF241830	JAG1	chr20	10640788	+	HOOK3	chr8	42752274	+
In-frame	ENST00000394196	ENST00000396743		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
Frame-shit	ENST00000394196	ENST00000156084		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
In-frame	ENST00000394196	ENST00000376488		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
Frame-shit	ENST00000394196	ENST00000428668		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
5CDS-intron	ENST00000394196	ENST00000484499		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
In-frame	ENST00000557381	ENST00000396743		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
Frame-shit	ENST00000557381	ENST00000156084		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
In-frame	ENST00000557381	ENST00000376488		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
Frame-shit	ENST00000557381	ENST00000428668		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
5CDS-intron	ENST00000557381	ENST00000484499		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000420239	ENST00000396743		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000420239	ENST00000156084		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000420239	ENST00000376488		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000420239	ENST00000428668		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-intron	ENST00000420239	ENST00000484499		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000536619	ENST00000396743		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000536619	ENST00000156084		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000536619	ENST00000376488		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000536619	ENST00000428668		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-intron	ENST00000536619	ENST00000484499		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000554122	ENST00000396743		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000554122	ENST00000156084		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000554122	ENST00000376488		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-3CDS	ENST00000554122	ENST00000428668		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-intron	ENST00000554122	ENST00000484499		ChiTaRS3.1			BF852660	CHD2	chr15	93540196	-	OTUD5	chrX	48780479	+
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835120	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000488633	ENST00000328771		ChiTaRS3.1			BG986970	CIAO1	chr2	96937915	-	DHX34	chr19	47883401	+
intron-intron	ENST00000488633	ENST00000471451		ChiTaRS3.1			BG986970	CIAO1	chr2	96937915	-	DHX34	chr19	47883401	+
intron-intron	ENST00000469320	ENST00000328771		ChiTaRS3.1			BG986970	CIAO1	chr2	96937915	-	DHX34	chr19	47883401	+
intron-intron	ENST00000469320	ENST00000471451		ChiTaRS3.1			BG986970	CIAO1	chr2	96937915	-	DHX34	chr19	47883401	+
intron-intron	ENST00000410059	ENST00000344691		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000410059	ENST00000325074		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000410059	ENST00000437180		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-5UTR	ENST00000410059	ENST00000300305		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000410059	ENST00000399240		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000410059	ENST00000486278		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000410059	ENST00000494829		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000410059	ENST00000358356		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000344691		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000325074		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000437180		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-5UTR	ENST00000409163	ENST00000300305		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000399240		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000486278		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000494829		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000409163	ENST00000358356		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000344691		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000325074		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000437180		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-5UTR	ENST00000393147	ENST00000300305		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000399240		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000486278		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000494829		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000393147	ENST00000358356		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000344691		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000325074		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000437180		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-5UTR	ENST00000310323	ENST00000300305		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000399240		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000486278		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000494829		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000310323	ENST00000358356		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000344691		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000325074		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000437180		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-5UTR	ENST00000488208	ENST00000300305		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000399240		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000486278		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000494829		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-intron	ENST00000488208	ENST00000358356		ChiTaRS3.1			DR004240	DPP10	chr2	115344416	-	RUNX1	chr21	36421327	-
intron-3UTR	ENST00000228827	ENST00000392485		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000228827	ENST00000359995		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000228827	ENST00000508921		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000543199	ENST00000392485		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000543199	ENST00000359995		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000543199	ENST00000508921		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000537466	ENST00000392485		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000537466	ENST00000359995		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000537466	ENST00000508921		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000552180	ENST00000392485		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000552180	ENST00000359995		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
intron-3UTR	ENST00000552180	ENST00000508921		ChiTaRS3.1			BC063570	GPN3	chr12	110898788	-	SRSF2	chr17	74730890	-
5CDS-3UTR	ENST00000543307	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000543307	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000392219	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000392219	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000541435	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000541435	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000590686	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000590686	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000342879	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000342879	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000588699	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000588699	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000423817	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000423817	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000392218	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
5CDS-3UTR	ENST00000392218	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
intron-3UTR	ENST00000591716	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
intron-3UTR	ENST00000591716	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
intron-3UTR	ENST00000392217	ENST00000333090		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
intron-3UTR	ENST00000392217	ENST00000527881		ChiTaRS3.1			BG982440	FXYD5	chr19	35649295	+	TSKU	chr11	76509039	-
intron-3CDS	ENST00000392845	ENST00000392845		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-3CDS	ENST00000392845	ENST00000359479		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-intron	ENST00000392845	ENST00000460729		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-3CDS	ENST00000359479	ENST00000392845		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-3CDS	ENST00000359479	ENST00000359479		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-intron	ENST00000359479	ENST00000460729		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-3CDS	ENST00000460729	ENST00000392845		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-3CDS	ENST00000460729	ENST00000359479		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-intron	ENST00000460729	ENST00000460729		ChiTaRS3.1			DB356740	SLC33A1	chr3	155571164	+	SLC33A1	chr3	155560263	+
intron-intron	ENST00000529639	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529639	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529639	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529639	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000394532		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000309032		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000544785		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000394531		ChiTaRS3.1			BG472330	FAU	chr11	64888479	+	BAD	chr11	64052162	-
3UTR-3CDS	ENST00000580170	ENST00000580170		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000580170	ENST00000332175		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000580170	ENST00000400060		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000580170	ENST00000400053		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000580170	ENST00000444013		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-intron	ENST00000580170	ENST00000578571		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000332175	ENST00000580170		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000332175	ENST00000332175		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000332175	ENST00000400060		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000332175	ENST00000400053		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000332175	ENST00000444013		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-intron	ENST00000332175	ENST00000578571		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000400060	ENST00000580170		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000400060	ENST00000332175		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000400060	ENST00000400060		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000400060	ENST00000400053		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000400060	ENST00000444013		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-intron	ENST00000400060	ENST00000578571		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000400053	ENST00000580170		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000400053	ENST00000332175		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000400053	ENST00000400060		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000400053	ENST00000400053		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000400053	ENST00000444013		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-intron	ENST00000400053	ENST00000578571		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000444013	ENST00000580170		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000444013	ENST00000332175		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000444013	ENST00000400060		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000444013	ENST00000400053		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-3CDS	ENST00000444013	ENST00000444013		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
3UTR-intron	ENST00000444013	ENST00000578571		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000578571	ENST00000580170		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000578571	ENST00000332175		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000578571	ENST00000400060		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000578571	ENST00000400053		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3CDS	ENST00000578571	ENST00000444013		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-intron	ENST00000578571	ENST00000578571		ChiTaRS3.1			W27760	PTPRM	chr18	8406477	-	PTPRM	chr18	8370944	+
intron-3UTR	ENST00000311862	ENST00000368026		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000311862	ENST00000289779		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000311862	ENST00000537746		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000311862	ENST00000472573		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-3UTR	ENST00000533605	ENST00000368026		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000533605	ENST00000289779		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000533605	ENST00000537746		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000533605	ENST00000472573		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-3UTR	ENST00000525955	ENST00000368026		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000525955	ENST00000289779		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000525955	ENST00000537746		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000525955	ENST00000472573		ChiTaRS3.1			CB242530	PRG2	chr11	57175165	+	F11R	chr1	160967625	-
intron-intron	ENST00000377351	ENST00000377351		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377351	ENST00000335972		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377351	ENST00000490869		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377351	ENST00000377269		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000335972	ENST00000377351		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000335972	ENST00000335972		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000335972	ENST00000490869		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000335972	ENST00000377269		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000490869	ENST00000377351		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000490869	ENST00000335972		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000490869	ENST00000490869		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000490869	ENST00000377269		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377269	ENST00000377351		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377269	ENST00000335972		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377269	ENST00000490869		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
intron-intron	ENST00000377269	ENST00000377269		ChiTaRS3.1			BF746070	UBA1	chrX	47056012	+	UBA1	chrX	47056070	-
3UTR-intron	ENST00000291574	ENST00000410107		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
3UTR-intron	ENST00000291574	ENST00000397423		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
3UTR-intron	ENST00000291574	ENST00000495262		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
3UTR-intron	ENST00000291574	ENST00000379597		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
3UTR-intron	ENST00000291574	ENST00000316170		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
3UTR-intron	ENST00000291574	ENST00000265012		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000380221	ENST00000410107		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000380221	ENST00000397423		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000380221	ENST00000495262		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000380221	ENST00000379597		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000380221	ENST00000316170		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000380221	ENST00000265012		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000483973	ENST00000410107		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000483973	ENST00000397423		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000483973	ENST00000495262		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000483973	ENST00000379597		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000483973	ENST00000316170		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000483973	ENST00000265012		ChiTaRS3.1			R01820	TRAPPC10	chr21	45526079	-	GCNT2	chr6	10533111	-
intron-intron	ENST00000288078	ENST00000545260		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000545693		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000350537		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000346874		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374789		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374790		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374794		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374788		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000466092		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374776		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000340077		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000544292		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374773		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000288078	ENST00000374768		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000545260		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000545693		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000350537		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000346874		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374789		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374790		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374794		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374788		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000466092		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374776		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000340077		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000544292		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374773		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000428974	ENST00000374768		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000545260		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000545693		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000350537		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000346874		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374789		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374790		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374794		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374788		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000466092		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374776		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000340077		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000544292		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374773		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000571514	ENST00000374768		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000545260		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000545693		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000350537		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000346874		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374789		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374790		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374794		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374788		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000466092		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374776		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000340077		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000544292		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374773		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000378912	ENST00000374768		ChiTaRS3.1			BE147710	FUK	chr16	70511292	-	PARD3	chr10	34682233	-
intron-intron	ENST00000311172	ENST00000335247		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000311172	ENST00000409327		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409314	ENST00000335247		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409314	ENST00000409327		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409418	ENST00000335247		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409418	ENST00000409327		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000458644	ENST00000335247		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000458644	ENST00000409327		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409853	ENST00000335247		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409853	ENST00000409327		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409263	ENST00000335247		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000409263	ENST00000409327		ChiTaRS3.1			CK430650	FCHSD2	chr11	72657526	-	CYP27C1	chr2	127947135	+
intron-intron	ENST00000376085	ENST00000599539		ChiTaRS3.1			BG998400	LRRC38	chr1	13802168	+	RPS16	chr19	39926191	+
intron-intron	ENST00000376085	ENST00000339471		ChiTaRS3.1			BG998400	LRRC38	chr1	13802168	+	RPS16	chr19	39926191	+
intron-intron	ENST00000376085	ENST00000251453		ChiTaRS3.1			BG998400	LRRC38	chr1	13802168	+	RPS16	chr19	39926191	+
intron-intron	ENST00000376085	ENST00000601655		ChiTaRS3.1			BG998400	LRRC38	chr1	13802168	+	RPS16	chr19	39926191	+
intron-3CDS	ENST00000324631	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000324631	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000324631	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377328	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377328	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377328	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000352115	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000352115	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000352115	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000282343	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000282343	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000282343	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377331	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377331	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377331	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000396576	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000396576	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000396576	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377319	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377319	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377319	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377329	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377329	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377329	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377315	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377315	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000377315	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000467034	ENST00000282470		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000467034	ENST00000418378		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
intron-3CDS	ENST00000467034	ENST00000503414		ChiTaRS3.1			CB962120	CACNB2	chr10	18500360	+	SPARCL1	chr4	88403655	-
5CDS-3UTR	ENST00000374642	ENST00000374642		ChiTaRS3.1			BM688700	C1QA	chr1	22965831	-	C1QA	chr1	22965911	+
5CDS-3UTR	ENST00000374642	ENST00000402322		ChiTaRS3.1			BM688700	C1QA	chr1	22965831	-	C1QA	chr1	22965911	+
5CDS-3UTR	ENST00000402322	ENST00000374642		ChiTaRS3.1			BM688700	C1QA	chr1	22965831	-	C1QA	chr1	22965911	+
5CDS-3UTR	ENST00000402322	ENST00000402322		ChiTaRS3.1			BM688700	C1QA	chr1	22965831	-	C1QA	chr1	22965911	+
intron-3CDS	ENST00000330687	ENST00000425933		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000330687	ENST00000543599		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000330687	ENST00000329082		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000330687	ENST00000542321		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000330687	ENST00000538818		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000330687	ENST00000557301		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3UTR	ENST00000330687	ENST00000557420		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3UTR	ENST00000330687	ENST00000556658		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000330687	ENST00000556087		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000330687	ENST00000555584		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000394106	ENST00000425933		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000394106	ENST00000543599		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000394106	ENST00000329082		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000394106	ENST00000542321		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000394106	ENST00000538818		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000394106	ENST00000557301		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3UTR	ENST00000394106	ENST00000557420		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3UTR	ENST00000394106	ENST00000556658		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000394106	ENST00000556087		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000394106	ENST00000555584		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000563952	ENST00000425933		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000563952	ENST00000543599		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000563952	ENST00000329082		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000563952	ENST00000542321		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000563952	ENST00000538818		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3CDS	ENST00000563952	ENST00000557301		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3UTR	ENST00000563952	ENST00000557420		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-3UTR	ENST00000563952	ENST00000556658		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000563952	ENST00000556087		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000563952	ENST00000555584		ChiTaRS3.1			BF932730	CMTM4	chr16	66672250	+	RGMA	chr15	93588793	+
intron-intron	ENST00000311637	ENST00000311637		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000311637	ENST00000338821		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000311637	ENST00000402822		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000311637	ENST00000477492		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000338821	ENST00000311637		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000338821	ENST00000338821		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000338821	ENST00000402822		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000338821	ENST00000477492		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000402822	ENST00000311637		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000402822	ENST00000338821		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000402822	ENST00000402822		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000402822	ENST00000477492		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000477492	ENST00000311637		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000477492	ENST00000338821		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000477492	ENST00000402822		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-intron	ENST00000477492	ENST00000477492		ChiTaRS3.1			BF933640	ATP9A	chr20	50307360	+	ATP9A	chr20	50273476	+
intron-3CDS	ENST00000544024	ENST00000322723		ChiTaRS3.1			CA419460	KRT86	chr12	52679752	+	NCL	chr2	232325458	-
intron-3CDS	ENST00000423955	ENST00000322723		ChiTaRS3.1			CA419460	KRT86	chr12	52679752	+	NCL	chr2	232325458	-
intron-3CDS	ENST00000293525	ENST00000322723		ChiTaRS3.1			CA419460	KRT86	chr12	52679752	+	NCL	chr2	232325458	-
intron-intron	ENST00000374586	ENST00000238256		ChiTaRS3.1			BF376850	TMEM245	chr9	111801232	-	FKBP15	chr9	116025045	-
intron-intron	ENST00000374586	ENST00000493847		ChiTaRS3.1			BF376850	TMEM245	chr9	111801232	-	FKBP15	chr9	116025045	-
intron-intron	ENST00000406775	ENST00000521425		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000406775	ENST00000262213		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000406775	ENST00000536748		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000406775	ENST00000521049		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000342771	ENST00000521425		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000342771	ENST00000262213		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000342771	ENST00000536748		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000342771	ENST00000521049		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000403018	ENST00000521425		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000403018	ENST00000262213		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000403018	ENST00000536748		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000403018	ENST00000521049		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000489774	ENST00000521425		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000489774	ENST00000262213		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000489774	ENST00000536748		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-intron	ENST00000489774	ENST00000521049		ChiTaRS3.1			W89040	AUTS2	chr7	69624672	+	TRAM1	chr8	71507470	-
intron-3CDS	ENST00000280326	ENST00000280326		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000280326	ENST00000503026		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000280326	ENST00000515390		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000280326	ENST00000515676		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000280326	ENST00000506600		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000503026	ENST00000280326		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000503026	ENST00000503026		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000503026	ENST00000515390		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000503026	ENST00000515676		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000503026	ENST00000506600		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515390	ENST00000280326		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515390	ENST00000503026		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515390	ENST00000515390		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515390	ENST00000515676		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515390	ENST00000506600		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515676	ENST00000280326		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515676	ENST00000503026		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515676	ENST00000515390		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515676	ENST00000515676		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000515676	ENST00000506600		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000506600	ENST00000280326		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000506600	ENST00000503026		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000506600	ENST00000515390		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000506600	ENST00000515676		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
intron-3CDS	ENST00000506600	ENST00000506600		ChiTaRS3.1			BU160000	CCT5	chr5	10262592	-	CCT5	chr5	10262660	+
3UTR-3UTR	ENST00000373913	ENST00000373913		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000373913	ENST00000401952		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000373913	ENST00000373907		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000373913	ENST00000339266		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000373913	ENST00000475894		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000373913	ENST00000340491		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000401952	ENST00000373913		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000401952	ENST00000401952		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000401952	ENST00000373907		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000401952	ENST00000339266		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000401952	ENST00000475894		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000401952	ENST00000340491		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000373907	ENST00000373913		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000373907	ENST00000401952		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-intron	ENST00000373907	ENST00000373907		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000373907	ENST00000339266		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000373907	ENST00000475894		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-intron	ENST00000373907	ENST00000340491		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000339266	ENST00000373913		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000339266	ENST00000401952		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000339266	ENST00000373907		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000339266	ENST00000339266		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000339266	ENST00000475894		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000339266	ENST00000340491		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000475894	ENST00000373913		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000475894	ENST00000401952		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000475894	ENST00000373907		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000475894	ENST00000339266		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-3UTR	ENST00000475894	ENST00000475894		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
3UTR-intron	ENST00000475894	ENST00000340491		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000340491	ENST00000373913		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000340491	ENST00000401952		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-intron	ENST00000340491	ENST00000373907		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000340491	ENST00000339266		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-3UTR	ENST00000340491	ENST00000475894		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
intron-intron	ENST00000340491	ENST00000340491		ChiTaRS3.1			BM712550	DLGAP4	chr20	35156657	+	DLGAP4	chr20	35156691	-
Frame-shit	ENST00000320394	ENST00000320394		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000320394	ENST00000564186		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000320394	ENST00000541926		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
5CDS-5UTR	ENST00000320394	ENST00000433597		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
5CDS-intron	ENST00000320394	ENST00000562762		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000564186	ENST00000320394		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000564186	ENST00000564186		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000564186	ENST00000541926		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
5CDS-5UTR	ENST00000564186	ENST00000433597		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
5CDS-intron	ENST00000564186	ENST00000562762		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000541926	ENST00000320394		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000541926	ENST00000564186		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
Frame-shit	ENST00000541926	ENST00000541926		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
5CDS-5UTR	ENST00000541926	ENST00000433597		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
5CDS-intron	ENST00000541926	ENST00000562762		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3CDS	ENST00000433597	ENST00000320394		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3CDS	ENST00000433597	ENST00000564186		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3CDS	ENST00000433597	ENST00000541926		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-5UTR	ENST00000433597	ENST00000433597		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-intron	ENST00000433597	ENST00000562762		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3CDS	ENST00000562762	ENST00000320394		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3CDS	ENST00000562762	ENST00000564186		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3CDS	ENST00000562762	ENST00000541926		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-5UTR	ENST00000562762	ENST00000433597		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-intron	ENST00000562762	ENST00000562762		ChiTaRS3.1			BI520470	IQCK	chr16	19729632	-	IQCK	chr16	19745027	+
intron-3UTR	ENST00000437198	ENST00000265070		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-intron	ENST00000437198	ENST00000512668		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-3UTR	ENST00000420015	ENST00000265070		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-intron	ENST00000420015	ENST00000512668		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-3UTR	ENST00000341484	ENST00000265070		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-intron	ENST00000341484	ENST00000512668		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-3UTR	ENST00000539279	ENST00000265070		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-intron	ENST00000539279	ENST00000512668		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-3UTR	ENST00000566021	ENST00000265070		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-intron	ENST00000566021	ENST00000512668		ChiTaRS3.1			AW857210	PARN	chr16	14705270	-	GOLPH3	chr5	32126215	+
intron-intron	ENST00000400098	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400098	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400100	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000400097	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000553597	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000390687	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000346403	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000554227	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000577565	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000400098		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000400100		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000400097		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000553597		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000390687		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000346403		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000554227		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000577565		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-intron	ENST00000444203	ENST00000444203		ChiTaRS3.1			BU686050	SNRPN	chr15	25584344	+	SNRPN	chr15	25583678	+
intron-3CDS	ENST00000319622	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000319622	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000319622	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000319622	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565184	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565184	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565184	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565184	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000389093	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000389093	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000389093	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000389093	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000335181	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000335181	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000335181	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000335181	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568883	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568883	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568883	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568883	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000449901	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000449901	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000449901	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000449901	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565154	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565154	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565154	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000565154	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568459	ENST00000370119		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568459	ENST00000347652		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568459	ENST00000294728		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-3CDS	ENST00000568459	ENST00000370115		ChiTaRS3.1			BQ328230	PKM	chr15	72499482	-	VCAM1	chr1	101188620	+
intron-intron	ENST00000323274	ENST00000558530		ChiTaRS3.1			AW878210	TYMS	chr18	668859	+	TGIF2-C20orf24	chr20	35240288	+
intron-intron	ENST00000323250	ENST00000558530		ChiTaRS3.1			AW878210	TYMS	chr18	668859	+	TGIF2-C20orf24	chr20	35240288	+
intron-intron	ENST00000323224	ENST00000558530		ChiTaRS3.1			AW878210	TYMS	chr18	668859	+	TGIF2-C20orf24	chr20	35240288	+
intron-intron	ENST00000581920	ENST00000558530		ChiTaRS3.1			AW878210	TYMS	chr18	668859	+	TGIF2-C20orf24	chr20	35240288	+
3UTR-3UTR	ENST00000291574	ENST00000291574		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
3UTR-intron	ENST00000291574	ENST00000380221		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
3UTR-intron	ENST00000291574	ENST00000483973		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-3UTR	ENST00000380221	ENST00000291574		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000380221	ENST00000380221		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000380221	ENST00000483973		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-3UTR	ENST00000483973	ENST00000291574		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000483973	ENST00000380221		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000483973	ENST00000483973		ChiTaRS3.1			BQ934030	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AM050804	KMT2A	chr11	118358590	+	MLLT3	chr9	20377934	-
3UTR-3UTR	ENST00000461361	ENST00000461361		ChiTaRS3.1			CB241820	EXOSC7	chr3	45053938	-	EXOSC7	chr3	45052836	+
3UTR-3UTR	ENST00000461361	ENST00000265564		ChiTaRS3.1			CB241820	EXOSC7	chr3	45053938	-	EXOSC7	chr3	45052836	+
intron-3UTR	ENST00000265564	ENST00000461361		ChiTaRS3.1			CB241820	EXOSC7	chr3	45053938	-	EXOSC7	chr3	45052836	+
intron-3UTR	ENST00000265564	ENST00000265564		ChiTaRS3.1			CB241820	EXOSC7	chr3	45053938	-	EXOSC7	chr3	45052836	+
intron-5UTR	ENST00000489495	ENST00000280187		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
intron-5UTR	ENST00000489495	ENST00000393658		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
intron-intron	ENST00000489495	ENST00000506894		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
intron-intron	ENST00000489495	ENST00000515090		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
intron-intron	ENST00000489495	ENST00000506219		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-5UTR	ENST00000370768	ENST00000280187		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-5UTR	ENST00000370768	ENST00000393658		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000370768	ENST00000506894		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000370768	ENST00000515090		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000370768	ENST00000506219		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-5UTR	ENST00000370767	ENST00000280187		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-5UTR	ENST00000370767	ENST00000393658		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000370767	ENST00000506894		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000370767	ENST00000515090		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000370767	ENST00000506219		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-5UTR	ENST00000436586	ENST00000280187		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-5UTR	ENST00000436586	ENST00000393658		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000436586	ENST00000506894		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000436586	ENST00000515090		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
5CDS-intron	ENST00000436586	ENST00000506219		ChiTaRS3.1			DA113820	FUBP1	chr1	78433849	-	GPM6A	chr4	176733402	-
3UTR-intron	ENST00000394670	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000394670	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000394670	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000321233	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000321233	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000321233	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000394673	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000394673	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000394673	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000341711	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000341711	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000341711	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000342555	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000342555	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-intron	ENST00000342555	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000577908	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000577908	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000577908	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000584416	ENST00000358252		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000584416	ENST00000532437		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
3UTR-intron	ENST00000584416	ENST00000530920		ChiTaRS3.1			BF812770	ZNF207	chr17	30700470	-	TNKS1BP1	chr11	57074938	+
intron-3UTR	ENST00000253048	ENST00000253048		ChiTaRS3.1			CK299870	ZC3H4	chr19	47567752	+	ZC3H4	chr19	47567697	-
intron-intron	ENST00000253048	ENST00000594019		ChiTaRS3.1			CK299870	ZC3H4	chr19	47567752	+	ZC3H4	chr19	47567697	-
intron-3UTR	ENST00000594019	ENST00000253048		ChiTaRS3.1			CK299870	ZC3H4	chr19	47567752	+	ZC3H4	chr19	47567697	-
intron-intron	ENST00000594019	ENST00000594019		ChiTaRS3.1			CK299870	ZC3H4	chr19	47567752	+	ZC3H4	chr19	47567697	-
intron-3CDS	ENST00000261597	ENST00000261597		ChiTaRS3.1			CA311030	NDC80	chr18	2616434	-	NDC80	chr18	2610751	+
intron-intron	ENST00000333388	ENST00000333388		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000333388	ENST00000380175		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000333388	ENST00000360378		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000333388	ENST00000430835		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000380175	ENST00000333388		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000380175	ENST00000380175		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000380175	ENST00000360378		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000380175	ENST00000430835		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000360378	ENST00000333388		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000360378	ENST00000380175		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000360378	ENST00000360378		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000360378	ENST00000430835		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000430835	ENST00000333388		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000430835	ENST00000380175		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000430835	ENST00000360378		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000430835	ENST00000430835		ChiTaRS3.1			BI869450	C6orf201	chr6	4116192	+	C6orf201	chr6	4116160	-
intron-intron	ENST00000227495	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000227495	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000227495	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000227495	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000444328	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000444328	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000444328	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000444328	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000356132	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000356132	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000356132	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000356132	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000530591	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000530591	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000530591	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000530591	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000534083	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000534083	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000534083	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000534083	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000392669	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000392669	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000392669	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000392669	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000526756	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000526756	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000526756	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000526756	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000526727	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000526727	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000526727	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000526727	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000449406	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000449406	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000449406	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000449406	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000532243	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000532243	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000532243	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000532243	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000534457	ENST00000586703		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000534457	ENST00000407877		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000534457	ENST00000542587		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-5UTR	ENST00000534457	ENST00000589311		ChiTaRS3.1			DA524650	ST3GAL4	chr11	126293650	-	LPAR2	chr19	19738739	-
intron-intron	ENST00000535829	ENST00000421904		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000535829	ENST00000451291		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000535829	ENST00000445389		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-3UTR	ENST00000535829	ENST00000434897		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000535829	ENST00000428614		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000535829	ENST00000422449		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000535829	ENST00000421842		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000357529	ENST00000421904		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000357529	ENST00000451291		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000357529	ENST00000445389		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-3UTR	ENST00000357529	ENST00000434897		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000357529	ENST00000428614		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000357529	ENST00000422449		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000357529	ENST00000421842		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000299673	ENST00000421904		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000299673	ENST00000451291		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000299673	ENST00000445389		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-3UTR	ENST00000299673	ENST00000434897		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000299673	ENST00000428614		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000299673	ENST00000422449		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-intron	ENST00000299673	ENST00000421842		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000538135	ENST00000421904		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000538135	ENST00000451291		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000538135	ENST00000445389		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-3UTR	ENST00000538135	ENST00000434897		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000538135	ENST00000428614		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000538135	ENST00000422449		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
3UTR-intron	ENST00000538135	ENST00000421842		ChiTaRS3.1			CN430650	RIMKLB	chr12	8927996	-	DNAJC27-AS1	chr2	25259721	+
intron-3CDS	ENST00000449105	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000449105	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000449105	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000449105	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000449105	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000449105	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000449105	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000449105	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409636	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409636	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409636	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409636	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409636	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000409636	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000409636	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000409636	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000378915	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000378915	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000378915	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000378915	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000378915	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000378915	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000378915	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000378915	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000608859	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000608859	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000608859	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000608859	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000608859	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000608859	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000608859	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000608859	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409328	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409328	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409328	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409328	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000409328	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000409328	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000409328	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000409328	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000358367	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000358367	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000358367	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000358367	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000358367	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000358367	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000358367	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000358367	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000410076	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000410076	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000410076	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000410076	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000410076	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000410076	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000410076	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000410076	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000498516	ENST00000449105		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000498516	ENST00000409636		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000498516	ENST00000378915		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000498516	ENST00000608859		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000498516	ENST00000409328		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000498516	ENST00000358367		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000498516	ENST00000410076		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-intron	ENST00000498516	ENST00000498516		ChiTaRS3.1			AA639110	HNRNPLL	chr2	38791261	-	HNRNPLL	chr2	38791354	+
intron-3CDS	ENST00000258772	ENST00000350028		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-3UTR	ENST00000258772	ENST00000493161		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-5UTR	ENST00000258772	ENST00000396202		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-3CDS	ENST00000485367	ENST00000350028		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-3UTR	ENST00000485367	ENST00000493161		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-5UTR	ENST00000485367	ENST00000396202		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-3CDS	ENST00000431640	ENST00000350028		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-3UTR	ENST00000431640	ENST00000493161		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
intron-5UTR	ENST00000431640	ENST00000396202		ChiTaRS3.1			BE094760	DDX56	chr7	44609453	+	SAMM50	chr22	44369153	-
3UTR-3CDS	ENST00000491455	ENST00000591090		ChiTaRS3.1			BQ374720	SMYD2	chr1	214507570	-	ASNA1	chr19	12856514	-
3UTR-3CDS	ENST00000491455	ENST00000357332		ChiTaRS3.1			BQ374720	SMYD2	chr1	214507570	-	ASNA1	chr19	12856514	-
3UTR-3CDS	ENST00000415093	ENST00000591090		ChiTaRS3.1			BQ374720	SMYD2	chr1	214507570	-	ASNA1	chr19	12856514	-
3UTR-3CDS	ENST00000415093	ENST00000357332		ChiTaRS3.1			BQ374720	SMYD2	chr1	214507570	-	ASNA1	chr19	12856514	-
Frame-shit	ENST00000366957	ENST00000591090		ChiTaRS3.1			BQ374720	SMYD2	chr1	214507570	-	ASNA1	chr19	12856514	-
Frame-shit	ENST00000366957	ENST00000357332		ChiTaRS3.1			BQ374720	SMYD2	chr1	214507570	-	ASNA1	chr19	12856514	-
intron-intron	ENST00000265174	ENST00000265174		ChiTaRS3.1			AI499330	PAPSS1	chr4	108535286	+	PAPSS1	chr4	108535845	-
intron-intron	ENST00000265174	ENST00000511304		ChiTaRS3.1			AI499330	PAPSS1	chr4	108535286	+	PAPSS1	chr4	108535845	-
intron-intron	ENST00000511304	ENST00000265174		ChiTaRS3.1			AI499330	PAPSS1	chr4	108535286	+	PAPSS1	chr4	108535845	-
intron-intron	ENST00000511304	ENST00000511304		ChiTaRS3.1			AI499330	PAPSS1	chr4	108535286	+	PAPSS1	chr4	108535845	-
intron-3UTR	ENST00000409134	ENST00000534336		ChiTaRS3.1			BF821670	ALDH7A1	chr5	125900868	+	MALAT1	chr11	65268123	-
intron-3UTR	ENST00000447989	ENST00000534336		ChiTaRS3.1			BF821670	ALDH7A1	chr5	125900868	+	MALAT1	chr11	65268123	-
intron-3UTR	ENST00000553117	ENST00000534336		ChiTaRS3.1			BF821670	ALDH7A1	chr5	125900868	+	MALAT1	chr11	65268123	-
intron-3UTR	ENST00000413020	ENST00000534336		ChiTaRS3.1			BF821670	ALDH7A1	chr5	125900868	+	MALAT1	chr11	65268123	-
intron-3CDS	ENST00000221561	ENST00000221561		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000221561	ENST00000327141		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000221561	ENST00000592330		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000221561	ENST00000586839		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000327141	ENST00000221561		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000327141	ENST00000327141		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000327141	ENST00000592330		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000327141	ENST00000586839		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000592330	ENST00000221561		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000592330	ENST00000327141		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000592330	ENST00000592330		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000592330	ENST00000586839		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000586839	ENST00000221561		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-3CDS	ENST00000586839	ENST00000327141		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000586839	ENST00000592330		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000586839	ENST00000586839		ChiTaRS3.1			AA356820	AES	chr19	3053328	-	AES	chr19	3053993	-
intron-intron	ENST00000450686	ENST00000450686		ChiTaRS3.1			DB358950	LINC01004	chr7	104627829	+	LINC01004	chr7	104627146	+
intron-intron	ENST00000450686	ENST00000445184		ChiTaRS3.1			DB358950	LINC01004	chr7	104627829	+	LINC01004	chr7	104627146	+
intron-intron	ENST00000445184	ENST00000450686		ChiTaRS3.1			DB358950	LINC01004	chr7	104627829	+	LINC01004	chr7	104627146	+
intron-intron	ENST00000445184	ENST00000445184		ChiTaRS3.1			DB358950	LINC01004	chr7	104627829	+	LINC01004	chr7	104627146	+
3UTR-3UTR	ENST00000529443	ENST00000529443		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000529443	ENST00000299106		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000529443	ENST00000441717		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-intron	ENST00000529443	ENST00000524969		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000299106	ENST00000529443		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000299106	ENST00000299106		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000299106	ENST00000441717		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-intron	ENST00000299106	ENST00000524969		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000441717	ENST00000529443		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000441717	ENST00000299106		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-3UTR	ENST00000441717	ENST00000441717		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
3UTR-intron	ENST00000441717	ENST00000524969		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
intron-3UTR	ENST00000524969	ENST00000529443		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
intron-3UTR	ENST00000524969	ENST00000299106		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
intron-3UTR	ENST00000524969	ENST00000441717		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
intron-intron	ENST00000524969	ENST00000524969		ChiTaRS3.1			AA603550	JAM3	chr11	134021523	+	JAM3	chr11	134021316	-
intron-intron	ENST00000509176	ENST00000337195		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000509176	ENST00000531469		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000509176	ENST00000494626		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000509176	ENST00000411419		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000509176	ENST00000476817		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000509176	ENST00000309035		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000509176	ENST00000334808		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000337195		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000531469		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000494626		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000411419		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000476817		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000309035		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000333691	ENST00000334808		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000337195		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000531469		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000494626		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000411419		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000476817		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000309035		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000432775	ENST00000334808		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000337195		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000531469		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000494626		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000411419		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000476817		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000309035		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000504150	ENST00000334808		ChiTaRS3.1			BF514170	CCSER1	chr4	92256104	+	CTBP2	chr10	126725276	+
intron-intron	ENST00000302279	ENST00000302279		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000302279	ENST00000342116		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000302279	ENST00000524546		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000302279	ENST00000529687		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000302279		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000342116		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000524546		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000529687		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000302279		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000342116		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000524546		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000529687		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000302279		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000342116		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000524546		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000529687		ChiTaRS3.1			CK903110	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-3CDS	ENST00000597960	ENST00000334370		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000597960	ENST00000251268		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000597960	ENST00000378073		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000610101	ENST00000334370		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000610101	ENST00000251268		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000610101	ENST00000378073		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000596558	ENST00000334370		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000596558	ENST00000251268		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000596558	ENST00000378073		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000222308	ENST00000334370		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000222308	ENST00000251268		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000222308	ENST00000378073		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000608443	ENST00000334370		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000608443	ENST00000251268		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000608443	ENST00000378073		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000453489	ENST00000334370		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000453489	ENST00000251268		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-3CDS	ENST00000453489	ENST00000378073		ChiTaRS3.1			BU684410	FKBP8	chr19	18642640	+	MEGF8	chr19	42880784	-
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082260	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
Frame-shit	ENST00000401722	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000401722	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000401722	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000401722	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000228318	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000228318	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000228318	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000228318	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000188376	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000188376	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000188376	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000188376	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000551917	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000551917	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000551917	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000551917	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000552981	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000552981	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000552981	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000552981	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
intron-3CDS	ENST00000551265	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
intron-3CDS	ENST00000551265	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
intron-intron	ENST00000551265	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
intron-intron	ENST00000551265	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000547534	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000547534	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000547534	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000547534	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000549338	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000549338	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000549338	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000549338	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
Frame-shit	ENST00000548847	ENST00000393561		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
In-frame	ENST00000548847	ENST00000222399		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000548847	ENST00000393560		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
5CDS-intron	ENST00000548847	ENST00000474380		ChiTaRS3.1			CN410000	SLC25A3	chr12	98991808	+	LAMB1	chr7	107564415	-
intron-intron	ENST00000290705	ENST00000399496		ChiTaRS3.1			AI638690	MT1A	chr16	56652627	-	CABYR	chr18	21736065	-
intron-intron	ENST00000290705	ENST00000399481		ChiTaRS3.1			AI638690	MT1A	chr16	56652627	-	CABYR	chr18	21736065	-
intron-intron	ENST00000290705	ENST00000415309		ChiTaRS3.1			AI638690	MT1A	chr16	56652627	-	CABYR	chr18	21736065	-
intron-intron	ENST00000290705	ENST00000327201		ChiTaRS3.1			AI638690	MT1A	chr16	56652627	-	CABYR	chr18	21736065	-
intron-intron	ENST00000290705	ENST00000581397		ChiTaRS3.1			AI638690	MT1A	chr16	56652627	-	CABYR	chr18	21736065	-
intron-intron	ENST00000290705	ENST00000399499		ChiTaRS3.1			AI638690	MT1A	chr16	56652627	-	CABYR	chr18	21736065	-
In-frame	ENST00000332050	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000332050	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000397938	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000397938	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000406548	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000406548	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000331029	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000331029	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000414183	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000414183	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000333395	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000333395	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
In-frame	ENST00000332035	ENST00000262053		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
5CDS-5UTR	ENST00000332035	ENST00000539132		ChiTaRS3.1			JF290488	EWSR1	chr22	29683123	+	ATF1	chr12	51207793	+
intron-intron	ENST00000462410	ENST00000469972		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000462410	ENST00000372047		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000462410	ENST00000372050		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000462410	ENST00000393160		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000462410	ENST00000393157		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000462410	ENST00000542690		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000462410	ENST00000372062		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000469972		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000372047		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000372050		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000393160		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000393157		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000542690		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000336184	ENST00000372062		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000469972		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000372047		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000372050		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000393160		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000393157		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000542690		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000427925	ENST00000372062		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000469972		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000372047		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000372050		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000393160		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000393157		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000542690		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000261464	ENST00000372062		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000469972		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000372047		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000372050		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000393160		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000393157		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000542690		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
intron-intron	ENST00000367004	ENST00000372062		ChiTaRS3.1			BQ890280	TRAF5	chr1	211538188	+	RALGDS	chr9	135979989	-
5CDS-intron	ENST00000380550	ENST00000441210		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380550	ENST00000457433		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380550	ENST00000271064		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380550	ENST00000537531		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-3UTR	ENST00000380550	ENST00000481165		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000441210		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000457433		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000271064		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000537531		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-3UTR	ENST00000398395	ENST00000481165		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000441210		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000457433		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000271064		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000537531		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-3UTR	ENST00000380567	ENST00000481165		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000441210		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000457433		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000271064		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000537531		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-3UTR	ENST00000340096	ENST00000481165		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000441210		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000457433		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000271064		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000537531		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-3UTR	ENST00000490265	ENST00000481165		ChiTaRS3.1			AW375050	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-3CDS	ENST00000336156	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000336156	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000336156	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000336156	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000336156	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000336156	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000336156	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000391627	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000391627	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000391627	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000391627	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000391627	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000391627	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000391627	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000251993	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000251993	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000251993	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000251993	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000251993	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000251993	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000251993	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000474515	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000474515	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000474515	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000474515	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000474515	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000474515	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000474515	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000443310	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000443310	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000443310	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000443310	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000443310	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000443310	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000443310	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000496226	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000496226	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000496226	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000496226	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000496226	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000496226	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000496226	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000492273	ENST00000336156		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000492273	ENST00000391627		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3CDS	ENST00000492273	ENST00000251993		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000492273	ENST00000474515		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000492273	ENST00000443310		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000492273	ENST00000496226		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-intron	ENST00000492273	ENST00000492273		ChiTaRS3.1			BF229170	KIAA0930	chr22	45595792	-	KIAA0930	chr22	45601750	-
intron-3UTR	ENST00000360057	ENST00000305786		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000360057	ENST00000409409		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000360057	ENST00000409764		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-3UTR	ENST00000538212	ENST00000305786		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000538212	ENST00000409409		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000538212	ENST00000409764		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-3UTR	ENST00000549981	ENST00000305786		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000549981	ENST00000409409		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000549981	ENST00000409764		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-3UTR	ENST00000378099	ENST00000305786		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000378099	ENST00000409409		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000378099	ENST00000409764		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-3UTR	ENST00000547966	ENST00000305786		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000547966	ENST00000409409		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
intron-intron	ENST00000547966	ENST00000409764		ChiTaRS3.1			BM459600	TPK1	chr7	144344086	+	CYCS	chr7	25162542	-
3UTR-3CDS	ENST00000374994	ENST00000504734		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374994	ENST00000415618		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374994	ENST00000452673		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374994	ENST00000247461		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374994	ENST00000512607		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-intron	ENST00000374994	ENST00000503126		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374990	ENST00000504734		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374990	ENST00000415618		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374990	ENST00000452673		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374990	ENST00000247461		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000374990	ENST00000512607		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-intron	ENST00000374990	ENST00000503126		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000552516	ENST00000504734		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000552516	ENST00000415618		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000552516	ENST00000452673		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000552516	ENST00000247461		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-3CDS	ENST00000552516	ENST00000512607		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
3UTR-intron	ENST00000552516	ENST00000503126		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-3CDS	ENST00000550253	ENST00000504734		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-3CDS	ENST00000550253	ENST00000415618		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-3CDS	ENST00000550253	ENST00000452673		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-3CDS	ENST00000550253	ENST00000247461		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-3CDS	ENST00000550253	ENST00000512607		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-intron	ENST00000550253	ENST00000503126		ChiTaRS3.1			BE150450	TGFBR1	chr9	101915624	-	CANX	chr5	179155621	+
intron-intron	ENST00000553400	ENST00000358763		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000553400	ENST00000332840		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000553400	ENST00000467095		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000330836	ENST00000358763		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000330836	ENST00000332840		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000330836	ENST00000467095		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000544005	ENST00000358763		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000544005	ENST00000332840		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000544005	ENST00000467095		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000555054	ENST00000358763		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000555054	ENST00000332840		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-intron	ENST00000555054	ENST00000467095		ChiTaRS3.1			W51830	DDX24	chr14	94545863	+	SYN3	chr22	33255500	-
intron-5UTR	ENST00000436152	ENST00000382120		ChiTaRS3.1			BE551320	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000465801	ENST00000382120		ChiTaRS3.1			BE551320	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000336604	ENST00000382120		ChiTaRS3.1			BE551320	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000396840	ENST00000382120		ChiTaRS3.1			BE551320	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000356896	ENST00000382120		ChiTaRS3.1			BE551320	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-intron	ENST00000316020	ENST00000426959		ChiTaRS3.1			CV408930	OFCC1	chr6	9973953	+	MEGF9	chr9	123474605	+
intron-intron	ENST00000316020	ENST00000373930		ChiTaRS3.1			CV408930	OFCC1	chr6	9973953	+	MEGF9	chr9	123474605	+
intron-intron	ENST00000472329	ENST00000426959		ChiTaRS3.1			CV408930	OFCC1	chr6	9973953	+	MEGF9	chr9	123474605	+
intron-intron	ENST00000472329	ENST00000373930		ChiTaRS3.1			CV408930	OFCC1	chr6	9973953	+	MEGF9	chr9	123474605	+
intron-3CDS	ENST00000430069	ENST00000367225		ChiTaRS3.1			BU859760	TBL1XR1	chr3	176914909	-	RGS17	chr6	153365181	-
intron-5UTR	ENST00000430069	ENST00000206262		ChiTaRS3.1			BU859760	TBL1XR1	chr3	176914909	-	RGS17	chr6	153365181	-
5UTR-3CDS	ENST00000457928	ENST00000367225		ChiTaRS3.1			BU859760	TBL1XR1	chr3	176914909	-	RGS17	chr6	153365181	-
5UTR-5UTR	ENST00000457928	ENST00000206262		ChiTaRS3.1			BU859760	TBL1XR1	chr3	176914909	-	RGS17	chr6	153365181	-
intron-3CDS	ENST00000381815	ENST00000341845		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381815	ENST00000430046		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381815	ENST00000512348		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-intron	ENST00000381815	ENST00000287761		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381831	ENST00000341845		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381831	ENST00000430046		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381831	ENST00000512348		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-intron	ENST00000381831	ENST00000287761		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381839	ENST00000341845		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381839	ENST00000430046		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000381839	ENST00000512348		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-intron	ENST00000381839	ENST00000287761		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000543717	ENST00000341845		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000543717	ENST00000430046		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000543717	ENST00000512348		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-intron	ENST00000543717	ENST00000287761		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000361093	ENST00000341845		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000361093	ENST00000430046		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000361093	ENST00000512348		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-intron	ENST00000361093	ENST00000287761		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000497313	ENST00000341845		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000497313	ENST00000430046		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-3CDS	ENST00000497313	ENST00000512348		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
intron-intron	ENST00000497313	ENST00000287761		ChiTaRS3.1			BF763230	GART	chr21	34887528	+	FCHO2	chr5	72359704	+
3UTR-3UTR	ENST00000375312	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375312	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375312	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375312	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375312	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375312	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375312	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375312	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000360383	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000360383	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000360383	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000360383	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000360383	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000360383	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000360383	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000360383	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000356221	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000356221	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000356221	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000356221	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000356221	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000356221	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000356221	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000356221	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375310	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375310	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375310	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375310	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375310	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375310	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375310	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375310	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375308	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375308	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375308	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375308	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375308	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375308	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000375308	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000375308	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000252457	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252457	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000252457	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252457	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252457	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252457	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000252457	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252457	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000252458	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252458	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000252458	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252458	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252458	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252458	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-3UTR	ENST00000252458	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
3UTR-intron	ENST00000252458	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-3UTR	ENST00000461716	ENST00000375312		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-intron	ENST00000461716	ENST00000360383		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-3UTR	ENST00000461716	ENST00000356221		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-intron	ENST00000461716	ENST00000375310		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-intron	ENST00000461716	ENST00000375308		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-intron	ENST00000461716	ENST00000252457		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-3UTR	ENST00000461716	ENST00000252458		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-intron	ENST00000461716	ENST00000461716		ChiTaRS3.1			AA229050	CDC16	chr13	115038131	+	CDC16	chr13	115038018	-
intron-intron	ENST00000553400	ENST00000237696		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000553400	ENST00000479756		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000553400	ENST00000498640		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000330836	ENST00000237696		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000330836	ENST00000479756		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000330836	ENST00000498640		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000544005	ENST00000237696		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000544005	ENST00000479756		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000544005	ENST00000498640		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000555054	ENST00000237696		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000555054	ENST00000479756		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000555054	ENST00000498640		ChiTaRS3.1			R64730	DDX24	chr14	94545960	+	RARRES1	chr3	158435137	-
intron-intron	ENST00000393029	ENST00000372189		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393029	ENST00000372195		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393029	ENST00000372190		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393029	ENST00000481260		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393028	ENST00000372189		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393028	ENST00000372195		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393028	ENST00000372190		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393028	ENST00000481260		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000345425	ENST00000372189		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000345425	ENST00000372195		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000345425	ENST00000372190		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000345425	ENST00000481260		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393033	ENST00000372189		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393033	ENST00000372195		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393033	ENST00000372190		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000393033	ENST00000481260		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000591349	ENST00000372189		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000591349	ENST00000372195		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000591349	ENST00000372190		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000591349	ENST00000481260		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000586027	ENST00000372189		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000586027	ENST00000372195		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000586027	ENST00000372190		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-intron	ENST00000586027	ENST00000481260		ChiTaRS3.1			BG003110	GIPC1	chr19	14588693	-	RAPGEF1	chr9	134587552	+
intron-3UTR	ENST00000371269	ENST00000371269		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-intron	ENST00000371269	ENST00000537443		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-intron	ENST00000371269	ENST00000535035		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-3UTR	ENST00000537443	ENST00000371269		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-intron	ENST00000537443	ENST00000537443		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-intron	ENST00000537443	ENST00000535035		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-3UTR	ENST00000535035	ENST00000371269		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-intron	ENST00000535035	ENST00000537443		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
intron-intron	ENST00000535035	ENST00000535035		ChiTaRS3.1			AA658920	DHCR24	chr1	55316129	-	DHCR24	chr1	55316263	+
3UTR-intron	ENST00000206595	ENST00000272793		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
3UTR-intron	ENST00000206595	ENST00000418381		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
3UTR-intron	ENST00000206595	ENST00000392631		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
3UTR-intron	ENST00000206595	ENST00000465630		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000544007	ENST00000272793		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000544007	ENST00000418381		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000544007	ENST00000392631		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000544007	ENST00000465630		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000438909	ENST00000272793		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000438909	ENST00000418381		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000438909	ENST00000392631		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000438909	ENST00000465630		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000553504	ENST00000272793		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000553504	ENST00000418381		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000553504	ENST00000392631		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-intron	ENST00000553504	ENST00000465630		ChiTaRS3.1			AV751440	G2E3	chr14	31086454	-	UBR3	chr2	170775185	+
intron-3UTR	ENST00000367511	ENST00000367511		ChiTaRS3.1			BE838130	FAM129A	chr1	184760888	+	FAM129A	chr1	184760825	-
intron-intron	ENST00000367511	ENST00000487074		ChiTaRS3.1			BE838130	FAM129A	chr1	184760888	+	FAM129A	chr1	184760825	-
intron-3UTR	ENST00000487074	ENST00000367511		ChiTaRS3.1			BE838130	FAM129A	chr1	184760888	+	FAM129A	chr1	184760825	-
intron-intron	ENST00000487074	ENST00000487074		ChiTaRS3.1			BE838130	FAM129A	chr1	184760888	+	FAM129A	chr1	184760825	-
3UTR-intron	ENST00000358136	ENST00000522092		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000358136	ENST00000578889		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000358136	ENST00000577187		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000358136	ENST00000524139		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000358136	ENST00000520816		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000356315	ENST00000522092		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000356315	ENST00000578889		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000356315	ENST00000577187		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000356315	ENST00000524139		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000356315	ENST00000520816		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000496628	ENST00000522092		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000496628	ENST00000578889		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000496628	ENST00000577187		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000496628	ENST00000524139		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000496628	ENST00000520816		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543766	ENST00000522092		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543766	ENST00000578889		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543766	ENST00000577187		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543766	ENST00000524139		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543766	ENST00000520816		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000471923	ENST00000522092		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000471923	ENST00000578889		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000471923	ENST00000577187		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000471923	ENST00000524139		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000471923	ENST00000520816		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543710	ENST00000522092		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543710	ENST00000578889		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543710	ENST00000577187		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543710	ENST00000524139		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-intron	ENST00000543710	ENST00000520816		ChiTaRS3.1			AL833320	VPS13D	chr1	12569118	+	ERICH1-AS1	chr8	933911	+
3UTR-3UTR	ENST00000398590	ENST00000272102		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000398590	ENST00000540651		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-intron	ENST00000398590	ENST00000478424		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000398590	ENST00000541182		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000295900	ENST00000272102		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000295900	ENST00000540651		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-intron	ENST00000295900	ENST00000478424		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000295900	ENST00000541182		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000487717	ENST00000272102		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000487717	ENST00000540651		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-intron	ENST00000487717	ENST00000478424		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000487717	ENST00000541182		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000538065	ENST00000272102		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000538065	ENST00000540651		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-intron	ENST00000538065	ENST00000478424		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000538065	ENST00000541182		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000484332	ENST00000272102		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000484332	ENST00000540651		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-intron	ENST00000484332	ENST00000478424		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000484332	ENST00000541182		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000488239	ENST00000272102		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000488239	ENST00000540651		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-intron	ENST00000488239	ENST00000478424		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
intron-3UTR	ENST00000488239	ENST00000541182		ChiTaRS3.1			BG272060	ATXN7	chr3	63989021	+	ARF1	chr1	228286350	-
3UTR-3UTR	ENST00000351937	ENST00000534336		ChiTaRS3.1			AA532630	TRIM41	chr5	180662473	-	MALAT1	chr11	65271550	-
3UTR-3UTR	ENST00000315073	ENST00000534336		ChiTaRS3.1			AA532630	TRIM41	chr5	180662473	-	MALAT1	chr11	65271550	-
intron-3UTR	ENST00000510072	ENST00000534336		ChiTaRS3.1			AA532630	TRIM41	chr5	180662473	-	MALAT1	chr11	65271550	-
intron-3CDS	ENST00000290378	ENST00000371437		ChiTaRS3.1			AJ709010	ACTC1	chr15	35085626	-	NDUFA1	chrX	119005921	+
intron-3CDS	ENST00000557860	ENST00000371437		ChiTaRS3.1			AJ709010	ACTC1	chr15	35085626	-	NDUFA1	chrX	119005921	+
intron-3UTR	ENST00000441493	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000441493	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000441493	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000441493	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000400561	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000400561	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000400561	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000400561	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000444520	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000444520	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000444520	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000444520	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000414725	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000414725	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000414725	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000414725	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000383094	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000383094	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000383094	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000383094	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000207726	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000207726	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000207726	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000207726	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000429452	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000429452	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000429452	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000429452	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000585038	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000585038	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000585038	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000585038	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000580469	ENST00000433473		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000580469	ENST00000372775		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000580469	ENST00000449045		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000580469	ENST00000530076		ChiTaRS3.1			BE837830	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000519643	ENST00000260502		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000519643	ENST00000370244		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000519643	ENST00000370243		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000519643	ENST00000370247		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000519643	ENST00000539242		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000519643	ENST00000466632		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000311601	ENST00000260502		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000311601	ENST00000370244		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000311601	ENST00000370243		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000311601	ENST00000370247		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000311601	ENST00000539242		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000311601	ENST00000466632		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000523651	ENST00000260502		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000523651	ENST00000370244		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000523651	ENST00000370243		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000523651	ENST00000370247		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000523651	ENST00000539242		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
intron-intron	ENST00000523651	ENST00000466632		ChiTaRS3.1			BF806130	SH3PXD2B	chr5	171853528	+	BCAR3	chr1	94142783	-
3UTR-3CDS	ENST00000348370	ENST00000348370		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000348370	ENST00000434298		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000348370	ENST00000559209		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000348370	ENST00000557998		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000348370	ENST00000561186		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3UTR	ENST00000348370	ENST00000560080		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000434298	ENST00000348370		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000434298	ENST00000434298		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000434298	ENST00000559209		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000434298	ENST00000557998		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000434298	ENST00000561186		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3UTR	ENST00000434298	ENST00000560080		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000559209	ENST00000348370		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000559209	ENST00000434298		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000559209	ENST00000559209		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000559209	ENST00000557998		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000559209	ENST00000561186		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3UTR	ENST00000559209	ENST00000560080		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000557998	ENST00000348370		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000557998	ENST00000434298		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000557998	ENST00000559209		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000557998	ENST00000557998		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000557998	ENST00000561186		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3UTR	ENST00000557998	ENST00000560080		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000561186	ENST00000348370		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000561186	ENST00000434298		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000561186	ENST00000559209		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000561186	ENST00000557998		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3CDS	ENST00000561186	ENST00000561186		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
3UTR-3UTR	ENST00000561186	ENST00000560080		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3CDS	ENST00000560080	ENST00000348370		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3CDS	ENST00000560080	ENST00000434298		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3CDS	ENST00000560080	ENST00000559209		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3CDS	ENST00000560080	ENST00000557998		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3CDS	ENST00000560080	ENST00000561186		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3UTR	ENST00000560080	ENST00000560080		ChiTaRS3.1			BP221100	RNF111	chr15	59388084	-	RNF111	chr15	59386987	+
intron-3CDS	ENST00000288602	ENST00000288602		ChiTaRS3.1			BE083400	BRAF	chr7	140494094	-	BRAF	chr7	140508795	-
intron-3CDS	ENST00000371269	ENST00000358701		ChiTaRS3.1			AW997410	DHCR24	chr1	55319284	+	QSOX2	chr9	139118628	+
intron-3CDS	ENST00000537443	ENST00000358701		ChiTaRS3.1			AW997410	DHCR24	chr1	55319284	+	QSOX2	chr9	139118628	+
intron-3CDS	ENST00000535035	ENST00000358701		ChiTaRS3.1			AW997410	DHCR24	chr1	55319284	+	QSOX2	chr9	139118628	+
3UTR-3UTR	ENST00000432069	ENST00000432069		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000432069	ENST00000564053		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-intron	ENST00000432069	ENST00000568199		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000432069	ENST00000268605		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000432069	ENST00000568146		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000564053	ENST00000432069		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000564053	ENST00000564053		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-intron	ENST00000564053	ENST00000568199		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000564053	ENST00000268605		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000564053	ENST00000568146		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
intron-3UTR	ENST00000568199	ENST00000432069		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
intron-3UTR	ENST00000568199	ENST00000564053		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
intron-intron	ENST00000568199	ENST00000568199		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
intron-3UTR	ENST00000568199	ENST00000268605		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
intron-3UTR	ENST00000568199	ENST00000568146		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000268605	ENST00000432069		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000268605	ENST00000564053		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-intron	ENST00000268605	ENST00000568199		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000268605	ENST00000268605		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000268605	ENST00000568146		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000568146	ENST00000432069		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000568146	ENST00000564053		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-intron	ENST00000568146	ENST00000568199		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000568146	ENST00000268605		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
3UTR-3UTR	ENST00000568146	ENST00000568146		ChiTaRS3.1			CB052170	NOL3	chr16	67209338	-	NOL3	chr16	67209298	+
intron-intron	ENST00000398576	ENST00000375514		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000398576	ENST00000415876		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000398576	ENST00000535165		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000398576	ENST00000493021		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000398576	ENST00000272716		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000398576	ENST00000446997		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000398576	ENST00000421911		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000375514		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000415876		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000535165		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000493021		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000272716		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000446997		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000323076	ENST00000421911		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000375514		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000415876		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000535165		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000493021		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000272716		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000446997		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000435666	ENST00000421911		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000375514		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000415876		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000535165		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000493021		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000272716		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000446997		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000460190	ENST00000421911		ChiTaRS3.1			BG392690	LCP1	chr13	46717436	-	SLC4A10	chr2	162661287	+
intron-intron	ENST00000381971	ENST00000381971		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-3UTR	ENST00000381971	ENST00000324333		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-intron	ENST00000381971	ENST00000461870		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-intron	ENST00000324333	ENST00000381971		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-3UTR	ENST00000324333	ENST00000324333		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-intron	ENST00000324333	ENST00000461870		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-intron	ENST00000461870	ENST00000381971		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-3UTR	ENST00000461870	ENST00000324333		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-intron	ENST00000461870	ENST00000461870		ChiTaRS3.1			CB242350	GLIS3	chr9	3825295	+	GLIS3	chr9	3825247	-
intron-3UTR	ENST00000511998	ENST00000294008		ChiTaRS3.1			AK091470	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-3UTR	ENST00000433902	ENST00000294008		ChiTaRS3.1			AK091470	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
5CDS-3UTR	ENST00000383461	ENST00000294008		ChiTaRS3.1			AK091470	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-3UTR	ENST00000537780	ENST00000294008		ChiTaRS3.1			AK091470	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-3UTR	ENST00000502789	ENST00000294008		ChiTaRS3.1			AK091470	H1FX-AS1	chr3	129045065	+	SLX4	chr16	3631269	-
intron-intron	ENST00000393701	ENST00000444303		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000393701	ENST00000396554		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000393701	ENST00000530864		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000568461	ENST00000444303		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000568461	ENST00000396554		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000568461	ENST00000530864		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000288040	ENST00000444303		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000288040	ENST00000396554		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000288040	ENST00000530864		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000449317	ENST00000444303		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000449317	ENST00000396554		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000449317	ENST00000530864		ChiTaRS3.1			BI027290	CLEC18A	chr16	70152597	+	AMPD3	chr11	10518039	+
intron-intron	ENST00000421182	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000421182	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000421182	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000357867	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000357867	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000357867	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000323926	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000323926	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000323926	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000336916	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000336916	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000336916	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000354785	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000354785	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000354785	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000357009	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000357009	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000357009	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000346544	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000346544	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000346544	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000345488	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000345488	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000345488	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000359671	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000359671	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000359671	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000446046	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000446046	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000446046	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000443816	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000443816	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000443816	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000432072	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000432072	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000432072	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000356005	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000356005	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000356005	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000490833	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000490833	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000490833	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000426059	ENST00000355520		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000426059	ENST00000540071		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000426059	ENST00000484842		ChiTaRS3.1			BI057640	FN1	chr2	216256460	+	OPHN1	chrX	67297949	-
intron-intron	ENST00000301732	ENST00000301732		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000301732	ENST00000382381		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000301732	ENST00000567910		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000382381	ENST00000301732		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000382381	ENST00000382381		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000382381	ENST00000567910		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000567910	ENST00000301732		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000567910	ENST00000382381		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000567910	ENST00000567910		ChiTaRS3.1			AW894220	ABCA3	chr16	2383328	+	ABCA3	chr16	2383285	-
intron-intron	ENST00000407775	ENST00000330978		ChiTaRS3.1			BF876330	ZFPM2	chr8	106382731	+	BOLA2	chr16	29934041	-
intron-intron	ENST00000520492	ENST00000330978		ChiTaRS3.1			BF876330	ZFPM2	chr8	106382731	+	BOLA2	chr16	29934041	-
intron-intron	ENST00000517361	ENST00000330978		ChiTaRS3.1			BF876330	ZFPM2	chr8	106382731	+	BOLA2	chr16	29934041	-
intron-intron	ENST00000522296	ENST00000330978		ChiTaRS3.1			BF876330	ZFPM2	chr8	106382731	+	BOLA2	chr16	29934041	-
intron-intron	ENST00000378472	ENST00000330978		ChiTaRS3.1			BF876330	ZFPM2	chr8	106382731	+	BOLA2	chr16	29934041	-
intron-intron	ENST00000404771	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000404771	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000372440	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000372440	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000372443	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000372443	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000286628	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000286628	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000286627	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000286627	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000354353	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000354353	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000404857	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000404857	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000406533	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000406533	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000484507	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000484507	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000481070	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000481070	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000480683	ENST00000358368		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
intron-intron	ENST00000480683	ENST00000534844		ChiTaRS3.1			BI040240	KCNMA1	chr10	79280091	+	XAB2	chr19	7690976	+
5CDS-intron	ENST00000253003	ENST00000543418		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000392833		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000362010		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000392832		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000469007		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000494677		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000537559		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
5CDS-intron	ENST00000253003	ENST00000468233		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000543418		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000392833		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000362010		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000392832		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000469007		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000494677		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000537559		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-intron	ENST00000462554	ENST00000468233		ChiTaRS3.1			BI014390	ADRM1	chr20	60883918	+	VEPH1	chr3	157217066	-
intron-3CDS	ENST00000374040	ENST00000374040		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000374040	ENST00000493901		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000374040	ENST00000357582		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000493901	ENST00000374040		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000493901	ENST00000493901		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000493901	ENST00000357582		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000357582	ENST00000374040		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000357582	ENST00000493901		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-3CDS	ENST00000357582	ENST00000357582		ChiTaRS3.1			BM759740	MAP3K6	chr1	27682951	-	MAP3K6	chr1	27684299	-
intron-intron	ENST00000325144	ENST00000342704		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000375279		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000344201		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000397798		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000346541		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000397800		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000492345		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000359606		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000491618		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-intron	ENST00000325144	ENST00000543126		ChiTaRS3.1			DB371560	ZBTB2	chr6	151685359	+	CBFA2T2	chr20	32173261	-
intron-5UTR	ENST00000481038	ENST00000596528		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-intron	ENST00000481038	ENST00000599743		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-3UTR	ENST00000481038	ENST00000300619		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-intron	ENST00000481038	ENST00000397082		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-5UTR	ENST00000379019	ENST00000596528		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-intron	ENST00000379019	ENST00000599743		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-3UTR	ENST00000379019	ENST00000300619		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-intron	ENST00000379019	ENST00000397082		ChiTaRS3.1			AW377070	GPCPD1	chr20	5567951	+	ZNF91	chr19	23541550	+
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			BQ361980	INS-IGF2	chr11	2153598	+	INS-IGF2	chr11	2152230	+
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			BQ361980	INS-IGF2	chr11	2153598	+	INS-IGF2	chr11	2152230	+
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			BQ361980	INS-IGF2	chr11	2153598	+	INS-IGF2	chr11	2152230	+
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			BQ361980	INS-IGF2	chr11	2153598	+	INS-IGF2	chr11	2152230	+
intron-intron	ENST00000245865	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000245865	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000245865	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000245865	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000245865	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000375840	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000375840	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000375840	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000375840	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000375840	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000392950	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000392950	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000392950	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000392950	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000392950	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000336174	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000336174	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000336174	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000336174	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000336174	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000447001	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000447001	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000447001	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000447001	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000447001	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000582137	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000582137	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000582137	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000582137	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000582137	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000580039	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000580039	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000580039	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000580039	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000580039	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000579340	ENST00000371839		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000579340	ENST00000371838		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000579340	ENST00000371836		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000579340	ENST00000334103		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-intron	ENST00000579340	ENST00000497451		ChiTaRS3.1			BF852160	STRADA	chr17	61780620	+	AGBL4	chr1	50482982	-
intron-3CDS	ENST00000368868	ENST00000549115		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000368868	ENST00000607599		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000368868	ENST00000548752		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000368868	ENST00000359118		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000368868	ENST00000552002		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000447402	ENST00000549115		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000447402	ENST00000607599		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000447402	ENST00000548752		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000447402	ENST00000359118		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000447402	ENST00000552002		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000426705	ENST00000549115		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000426705	ENST00000607599		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000426705	ENST00000548752		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000426705	ENST00000359118		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000426705	ENST00000552002		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000435071	ENST00000549115		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000435071	ENST00000607599		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000435071	ENST00000548752		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000435071	ENST00000359118		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000435071	ENST00000552002		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000473693	ENST00000549115		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000473693	ENST00000607599		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-3CDS	ENST00000473693	ENST00000548752		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000473693	ENST00000359118		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-5UTR	ENST00000473693	ENST00000552002		ChiTaRS3.1			AF113700	SELENBP1	chr1	151338834	+	CHURC1	chr14	65381176	+
intron-intron	ENST00000216181	ENST00000216181		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000216181	ENST00000475726		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000216181	ENST00000401701		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000475726	ENST00000216181		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000475726	ENST00000475726		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000475726	ENST00000401701		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000401701	ENST00000216181		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000401701	ENST00000475726		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
intron-intron	ENST00000401701	ENST00000401701		ChiTaRS3.1			CR992140	MYH9	chr22	36697043	+	MYH9	chr22	36688291	-
5CDS-intron	ENST00000322776	ENST00000305135		ChiTaRS3.1			BQ371210	NDUFV1	chr11	67378650	+	YEATS2	chr3	183483217	+
5CDS-intron	ENST00000532303	ENST00000305135		ChiTaRS3.1			BQ371210	NDUFV1	chr11	67378650	+	YEATS2	chr3	183483217	+
5CDS-intron	ENST00000529927	ENST00000305135		ChiTaRS3.1			BQ371210	NDUFV1	chr11	67378650	+	YEATS2	chr3	183483217	+
5CDS-intron	ENST00000415352	ENST00000305135		ChiTaRS3.1			BQ371210	NDUFV1	chr11	67378650	+	YEATS2	chr3	183483217	+
3UTR-intron	ENST00000526169	ENST00000305135		ChiTaRS3.1			BQ371210	NDUFV1	chr11	67378650	+	YEATS2	chr3	183483217	+
intron-3UTR	ENST00000585509	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000585509	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000589297	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000591455	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000446868	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000361101	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000589296	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000585509		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000589297		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000591455		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000446868		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000361101		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000589296		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000586175	ENST00000586175		ChiTaRS3.1			BI011190	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000419735	ENST00000419735		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000419735	ENST00000477775		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000419735	ENST00000318724		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000419735	ENST00000478915		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000419735	ENST00000388807		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000419735	ENST00000472910		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000477775	ENST00000419735		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000477775	ENST00000477775		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000477775	ENST00000318724		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000477775	ENST00000478915		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000477775	ENST00000388807		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000477775	ENST00000472910		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000318724	ENST00000419735		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000318724	ENST00000477775		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000318724	ENST00000318724		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000318724	ENST00000478915		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000318724	ENST00000388807		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000318724	ENST00000472910		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000478915	ENST00000419735		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000478915	ENST00000477775		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000478915	ENST00000318724		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000478915	ENST00000478915		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000478915	ENST00000388807		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000478915	ENST00000472910		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000388807	ENST00000419735		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000388807	ENST00000477775		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000388807	ENST00000318724		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000388807	ENST00000478915		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000388807	ENST00000388807		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000388807	ENST00000472910		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000472910	ENST00000419735		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000472910	ENST00000477775		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000472910	ENST00000318724		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000472910	ENST00000478915		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000472910	ENST00000388807		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-intron	ENST00000472910	ENST00000472910		ChiTaRS3.1			BF951750	ATXN7L1	chr7	105256922	+	ATXN7L1	chr7	105256700	-
intron-3UTR	ENST00000544564	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000544564	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000544564	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000544564	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000541571	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000541571	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000541571	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000541571	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000535424	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000535424	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000535424	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000535424	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378799	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378799	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378799	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000378799	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538565	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538565	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538565	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000538565	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000606369	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000606369	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000606369	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000606369	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000329908	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000329908	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000329908	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000329908	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538850	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538850	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538850	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000538850	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378798	ENST00000313010		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378798	ENST00000393399		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378798	ENST00000535099		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000378798	ENST00000525772		ChiTaRS3.1			BE767730	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
In-frame	ENST00000354366	ENST00000354366		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
5CDS-intron	ENST00000354366	ENST00000357904		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
5CDS-5UTR	ENST00000354366	ENST00000557106		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
5UTR-3CDS	ENST00000357904	ENST00000354366		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
5UTR-intron	ENST00000357904	ENST00000357904		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
5UTR-5UTR	ENST00000357904	ENST00000557106		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
intron-3CDS	ENST00000557106	ENST00000354366		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
intron-intron	ENST00000557106	ENST00000357904		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
intron-5UTR	ENST00000557106	ENST00000557106		ChiTaRS3.1			AW849740	NRDE2	chr14	90778731	-	NRDE2	chr14	90783157	-
intron-3CDS	ENST00000589935	ENST00000392133		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000589935	ENST00000392132		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3UTR	ENST00000589935	ENST00000471649		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000357574	ENST00000392133		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000357574	ENST00000392132		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3UTR	ENST00000357574	ENST00000471649		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000254442	ENST00000392133		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000254442	ENST00000392132		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3UTR	ENST00000254442	ENST00000471649		ChiTaRS3.1			BE709280	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-intron	ENST00000369219	ENST00000498289		ChiTaRS3.1			BQ067630	NBPF14	chr1	144836269	-	C1orf112	chr1	169722345	+
intron-intron	ENST00000369219	ENST00000413811		ChiTaRS3.1			BQ067630	NBPF14	chr1	144836269	-	C1orf112	chr1	169722345	+
intron-intron	ENST00000369219	ENST00000359326		ChiTaRS3.1			BQ067630	NBPF14	chr1	144836269	-	C1orf112	chr1	169722345	+
intron-intron	ENST00000369219	ENST00000456684		ChiTaRS3.1			BQ067630	NBPF14	chr1	144836269	-	C1orf112	chr1	169722345	+
intron-intron	ENST00000369219	ENST00000286031		ChiTaRS3.1			BQ067630	NBPF14	chr1	144836269	-	C1orf112	chr1	169722345	+
intron-3CDS	ENST00000377387	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377387	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377387	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377387	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377387	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377387	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377387	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000377387	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377390	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000377390	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000377394	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000377394	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000227503	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000227503	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000334944	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000334944	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000422298	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000422298	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000433274	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000433274	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000377387		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000377390		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000377394		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000227503		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000334944		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000422298		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3CDS	ENST00000489544	ENST00000433274		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-intron	ENST00000489544	ENST00000489544		ChiTaRS3.1			BG987940	SF1	chr11	64537077	+	SF1	chr11	64535144	+
intron-3UTR	ENST00000406337	ENST00000406337		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000406337	ENST00000265713		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000406337	ENST00000396930		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-intron	ENST00000406337	ENST00000485568		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000265713	ENST00000406337		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000265713	ENST00000265713		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000265713	ENST00000396930		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-intron	ENST00000265713	ENST00000485568		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000396930	ENST00000406337		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000396930	ENST00000265713		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000396930	ENST00000396930		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-intron	ENST00000396930	ENST00000485568		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000485568	ENST00000406337		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000485568	ENST00000265713		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-3UTR	ENST00000485568	ENST00000396930		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-intron	ENST00000485568	ENST00000485568		ChiTaRS3.1			CA314440	KAT6A	chr8	41788641	+	KAT6A	chr8	41788955	-
intron-intron	ENST00000401903	ENST00000358502		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000401903	ENST00000249066		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000401903	ENST00000451256		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000401903	ENST00000476579		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000316495	ENST00000358502		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000316495	ENST00000249066		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000316495	ENST00000451256		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000316495	ENST00000476579		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000478137	ENST00000358502		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000478137	ENST00000249066		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000478137	ENST00000451256		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-intron	ENST00000478137	ENST00000476579		ChiTaRS3.1			AA576860	ZFAND2A	chr7	1195107	+	APOL2	chr22	36633995	+
intron-3CDS	ENST00000263707	ENST00000263707		ChiTaRS3.1			BF327040	TFCP2L1	chr2	121995228	+	TFCP2L1	chr2	121983184	-
intron-3CDS	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408936	AFF1	chr4	88010904	+	KMT2A	chr11	118355645	+
intron-3CDS	ENST00000231061	ENST00000231061		ChiTaRS3.1			AI003940	SPARC	chr5	151042360	+	SPARC	chr5	151046050	-
intron-5UTR	ENST00000231061	ENST00000537849		ChiTaRS3.1			AI003940	SPARC	chr5	151042360	+	SPARC	chr5	151046050	-
intron-3CDS	ENST00000537849	ENST00000231061		ChiTaRS3.1			AI003940	SPARC	chr5	151042360	+	SPARC	chr5	151046050	-
intron-5UTR	ENST00000537849	ENST00000537849		ChiTaRS3.1			AI003940	SPARC	chr5	151042360	+	SPARC	chr5	151046050	-
intron-intron	ENST00000327767	ENST00000393324		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000327767	ENST00000359636		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000327767	ENST00000543262		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000327767	ENST00000323418		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000327767	ENST00000525957		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000514805	ENST00000393324		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000514805	ENST00000359636		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000514805	ENST00000543262		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000514805	ENST00000323418		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
intron-intron	ENST00000514805	ENST00000525957		ChiTaRS3.1			BF760370	TRIM52	chr5	180684253	+	ME3	chr11	86183556	+
3UTR-3UTR	ENST00000608999	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000608999	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000608999	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000608999	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000608999	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000608999	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000608999	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000336894	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000336894	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000336894	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000480184	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000480184	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000480184	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000356764	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000356764	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000356764	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000290419	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000290419	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000290419	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000391959	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000391959	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000391959	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000608999		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000336894		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000367270	ENST00000480184		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000367270	ENST00000356764		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000367270	ENST00000290419		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000391959		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000367270		ChiTaRS3.1			BF822360	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000347364	ENST00000323523		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000347364	ENST00000403410		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000347364	ENST00000462884		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000399054	ENST00000323523		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000399054	ENST00000403410		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000399054	ENST00000462884		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000609375	ENST00000323523		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000609375	ENST00000403410		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-intron	ENST00000609375	ENST00000462884		ChiTaRS3.1			BQ376920	MKKS	chr20	10393560	-	TMEM45A	chr3	100296233	-
intron-3UTR	ENST00000276420	ENST00000276420		ChiTaRS3.1			AA864400	DOK2	chr8	21766930	+	DOK2	chr8	21766652	+
intron-3UTR	ENST00000276420	ENST00000544659		ChiTaRS3.1			AA864400	DOK2	chr8	21766930	+	DOK2	chr8	21766652	+
intron-3UTR	ENST00000544659	ENST00000276420		ChiTaRS3.1			AA864400	DOK2	chr8	21766930	+	DOK2	chr8	21766652	+
intron-3UTR	ENST00000544659	ENST00000544659		ChiTaRS3.1			AA864400	DOK2	chr8	21766930	+	DOK2	chr8	21766652	+
3UTR-3CDS	ENST00000436909	ENST00000436909		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000436909	ENST00000561678		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000436909	ENST00000357464		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3UTR	ENST00000436909	ENST00000573002		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000561678	ENST00000436909		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000561678	ENST00000561678		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000561678	ENST00000357464		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3UTR	ENST00000561678	ENST00000573002		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000357464	ENST00000436909		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000357464	ENST00000561678		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000357464	ENST00000357464		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3UTR	ENST00000357464	ENST00000573002		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000573002	ENST00000436909		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000573002	ENST00000561678		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3CDS	ENST00000573002	ENST00000357464		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3UTR	ENST00000573002	ENST00000573002		ChiTaRS3.1			AA149560	PAPD5	chr16	50263278	+	PAPD5	chr16	50263181	-
3UTR-3UTR	ENST00000369085	ENST00000369085		ChiTaRS3.1			CA944410	BAG3	chr10	121437118	-	BAG3	chr10	121437063	+
intron-intron	ENST00000380130	ENST00000380130		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000380139		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000530622		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000459716		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000380133		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000380130		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000380139		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000530622		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000459716		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000380133		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000380130		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000380139		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000530622		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000459716		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000380133		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000380130		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000380139		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000530622		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000459716		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000380133		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000380130		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000380139		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000530622		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000459716		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000380133		ChiTaRS3.1			BE670660	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-3UTR	ENST00000329734	ENST00000448464		ChiTaRS3.1			BU675700	IRX3	chr16	54318197	+	TP53INP1	chr8	95938827	-
intron-3UTR	ENST00000329734	ENST00000342697		ChiTaRS3.1			BU675700	IRX3	chr16	54318197	+	TP53INP1	chr8	95938827	-
intron-intron	ENST00000329734	ENST00000378776		ChiTaRS3.1			BU675700	IRX3	chr16	54318197	+	TP53INP1	chr8	95938827	-
intron-3CDS	ENST00000504376	ENST00000388968		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000504376	ENST00000345042		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000504376	ENST00000544407		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000382254	ENST00000388968		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000382254	ENST00000345042		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000382254	ENST00000544407		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000522262	ENST00000388968		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000522262	ENST00000345042		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000522262	ENST00000544407		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000521384	ENST00000388968		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000521384	ENST00000345042		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000521384	ENST00000544407		ChiTaRS3.1			BC047350	CDH12	chr5	21883542	-	HSPD1	chr2	198363518	-
intron-3CDS	ENST00000269187	ENST00000442111		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000269187	ENST00000281703		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000269187	ENST00000537468		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000269187	ENST00000542193		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000590986	ENST00000442111		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000590986	ENST00000281703		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000590986	ENST00000537468		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000590986	ENST00000542193		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000440549	ENST00000442111		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000440549	ENST00000281703		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000440549	ENST00000537468		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-3CDS	ENST00000440549	ENST00000542193		ChiTaRS3.1			AW888610	SLC39A6	chr18	33689656	-	GLT1D1	chr12	129431883	+
intron-intron	ENST00000521861	ENST00000521861		ChiTaRS3.1			CV398950	EIF3H	chr8	117723446	+	EIF3H	chr8	117723301	-
intron-intron	ENST00000521861	ENST00000276682		ChiTaRS3.1			CV398950	EIF3H	chr8	117723446	+	EIF3H	chr8	117723301	-
intron-intron	ENST00000276682	ENST00000521861		ChiTaRS3.1			CV398950	EIF3H	chr8	117723446	+	EIF3H	chr8	117723301	-
intron-intron	ENST00000276682	ENST00000276682		ChiTaRS3.1			CV398950	EIF3H	chr8	117723446	+	EIF3H	chr8	117723301	-
intron-intron	ENST00000339561	ENST00000339561		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000339561	ENST00000185206		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000339561	ENST00000544153		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000339561	ENST00000486570		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000339561		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000185206		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000544153		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000486570		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000339561		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000185206		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000544153		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000486570		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000339561		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000185206		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000544153		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000486570		ChiTaRS3.1			BI056690	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-3CDS	ENST00000302631	ENST00000302631		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-3CDS	ENST00000302631	ENST00000355379		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-5UTR	ENST00000302631	ENST00000472397		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-3CDS	ENST00000355379	ENST00000302631		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-3CDS	ENST00000355379	ENST00000355379		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-5UTR	ENST00000355379	ENST00000472397		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-3CDS	ENST00000472397	ENST00000302631		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-3CDS	ENST00000472397	ENST00000355379		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
intron-5UTR	ENST00000472397	ENST00000472397		ChiTaRS3.1			AW837080	SCAMP3	chr1	155231966	+	SCAMP3	chr1	155226098	+
Frame-shit	ENST00000328908	ENST00000328908		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000328908	ENST00000397588		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000328908	ENST00000472453		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000449732		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000343762		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000328908		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000397588		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000397588	ENST00000472453		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000449732		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000343762		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000328908		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000397588		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-intron	ENST00000472453	ENST00000472453		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000449732		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000343762		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000328908		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000397588		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000449732	ENST00000472453		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000449732		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000343762		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000328908		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000397588		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000343762	ENST00000472453		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000449732		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000343762		ChiTaRS3.1			BG006890	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000478275	ENST00000478275		ChiTaRS3.1			AW865700	BATF3	chr1	212870119	+	BATF3	chr1	212870352	-
intron-5UTR	ENST00000478275	ENST00000243440		ChiTaRS3.1			AW865700	BATF3	chr1	212870119	+	BATF3	chr1	212870352	-
intron-5UTR	ENST00000243440	ENST00000478275		ChiTaRS3.1			AW865700	BATF3	chr1	212870119	+	BATF3	chr1	212870352	-
intron-5UTR	ENST00000243440	ENST00000243440		ChiTaRS3.1			AW865700	BATF3	chr1	212870119	+	BATF3	chr1	212870352	-
5UTR-intron	ENST00000267103	ENST00000267103		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
5UTR-intron	ENST00000267103	ENST00000548632		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
5UTR-intron	ENST00000267103	ENST00000549488		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000548632	ENST00000267103		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000548632	ENST00000548632		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000548632	ENST00000549488		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000549488	ENST00000267103		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000549488	ENST00000548632		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000549488	ENST00000549488		ChiTaRS3.1			CB046470	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-3CDS	ENST00000465804	ENST00000465804		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000465804	ENST00000360632		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000465804	ENST00000467467		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-intron	ENST00000465804	ENST00000474080		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000360632	ENST00000465804		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000360632	ENST00000360632		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000360632	ENST00000467467		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-intron	ENST00000360632	ENST00000474080		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000467467	ENST00000465804		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000467467	ENST00000360632		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000467467	ENST00000467467		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-intron	ENST00000467467	ENST00000474080		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000474080	ENST00000465804		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000474080	ENST00000360632		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-3CDS	ENST00000474080	ENST00000467467		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-intron	ENST00000474080	ENST00000474080		ChiTaRS3.1			CA311460	WWTR1	chr3	149238653	+	WWTR1	chr3	149243864	-
intron-intron	ENST00000302640	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000302640	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000354582	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000423119	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000456211	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000357086	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000544951	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000443694	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000302640		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000354582		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000423119		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000456211		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000357086		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000544951		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000443694		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000463980	ENST00000463980		ChiTaRS3.1			AA746880	ITPR1	chr3	4819330	+	ITPR1	chr3	4819357	-
intron-intron	ENST00000563592	ENST00000526148		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000563592	ENST00000525681		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000563592	ENST00000339995		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000563592	ENST00000396525		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000563592	ENST00000525995		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000566745	ENST00000526148		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000566745	ENST00000525681		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000566745	ENST00000339995		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000566745	ENST00000396525		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000566745	ENST00000525995		ChiTaRS3.1			AK127230	ADPGK-AS1	chr15	73082588	+	EIF4G2	chr11	10820001	-
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408921	AFF1	chr4	88011400	+	KMT2A	chr11	118355431	+
intron-3CDS	ENST00000216181	ENST00000216181		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-intron	ENST00000216181	ENST00000475726		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-intron	ENST00000216181	ENST00000401701		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-3CDS	ENST00000475726	ENST00000216181		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-intron	ENST00000475726	ENST00000475726		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-intron	ENST00000475726	ENST00000401701		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-3CDS	ENST00000401701	ENST00000216181		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-intron	ENST00000401701	ENST00000475726		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
intron-intron	ENST00000401701	ENST00000401701		ChiTaRS3.1			BF081780	MYH9	chr22	36685323	+	MYH9	chr22	36684937	-
3UTR-3UTR	ENST00000296452	ENST00000296452		ChiTaRS3.1			T08000	BSN	chr3	49706277	-	BSN	chr3	49706105	+
intron-3UTR	ENST00000588304	ENST00000233813		ChiTaRS3.1			AI939380	ACSBG2	chr19	6138285	+	IGFBP5	chr2	217539795	+
intron-3UTR	ENST00000588485	ENST00000233813		ChiTaRS3.1			AI939380	ACSBG2	chr19	6138285	+	IGFBP5	chr2	217539795	+
intron-3UTR	ENST00000591403	ENST00000233813		ChiTaRS3.1			AI939380	ACSBG2	chr19	6138285	+	IGFBP5	chr2	217539795	+
intron-3UTR	ENST00000586696	ENST00000233813		ChiTaRS3.1			AI939380	ACSBG2	chr19	6138285	+	IGFBP5	chr2	217539795	+
intron-3UTR	ENST00000252669	ENST00000233813		ChiTaRS3.1			AI939380	ACSBG2	chr19	6138285	+	IGFBP5	chr2	217539795	+
intron-3UTR	ENST00000591741	ENST00000233813		ChiTaRS3.1			AI939380	ACSBG2	chr19	6138285	+	IGFBP5	chr2	217539795	+
intron-3UTR	ENST00000013125	ENST00000013125		ChiTaRS3.1			BG390240	MAP4K5	chr14	50886146	+	MAP4K5	chr14	50886104	-
intron-intron	ENST00000013125	ENST00000557578		ChiTaRS3.1			BG390240	MAP4K5	chr14	50886146	+	MAP4K5	chr14	50886104	-
intron-3UTR	ENST00000557578	ENST00000013125		ChiTaRS3.1			BG390240	MAP4K5	chr14	50886146	+	MAP4K5	chr14	50886104	-
intron-intron	ENST00000557578	ENST00000557578		ChiTaRS3.1			BG390240	MAP4K5	chr14	50886146	+	MAP4K5	chr14	50886104	-
intron-3UTR	ENST00000398081	ENST00000307980		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
intron-3UTR	ENST00000398081	ENST00000535644		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
3UTR-3UTR	ENST00000468090	ENST00000307980		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
3UTR-3UTR	ENST00000468090	ENST00000535644		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
3UTR-3UTR	ENST00000291565	ENST00000307980		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
3UTR-3UTR	ENST00000291565	ENST00000535644		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
intron-3UTR	ENST00000327574	ENST00000307980		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
intron-3UTR	ENST00000327574	ENST00000535644		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
intron-3UTR	ENST00000476313	ENST00000307980		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
intron-3UTR	ENST00000476313	ENST00000535644		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
3UTR-3UTR	ENST00000467908	ENST00000307980		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
3UTR-3UTR	ENST00000467908	ENST00000535644		ChiTaRS3.1			BF916410	PDXK	chr21	45179830	-	RAD9A	chr11	67165211	+
intron-intron	ENST00000233057	ENST00000372188		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000233057	ENST00000372187		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000233057	ENST00000372185		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000233057	ENST00000372181		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-intron	ENST00000395127	ENST00000372188		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000395127	ENST00000372187		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000395127	ENST00000372185		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000395127	ENST00000372181		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-intron	ENST00000405334	ENST00000372188		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000405334	ENST00000372187		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000405334	ENST00000372185		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3UTR	ENST00000405334	ENST00000372181		ChiTaRS3.1			AW149070	EIF2AK2	chr2	37333939	+	FAM213A	chr10	82192121	-
intron-3CDS	ENST00000372684	ENST00000540468		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372684	ENST00000539919		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372684	ENST00000258091		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372684	ENST00000398422		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372684	ENST00000537131		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372684	ENST00000538797		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3UTR	ENST00000372684	ENST00000473786		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372683	ENST00000540468		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372683	ENST00000539919		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372683	ENST00000258091		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372683	ENST00000398422		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372683	ENST00000537131		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3CDS	ENST00000372683	ENST00000538797		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-3UTR	ENST00000372683	ENST00000473786		ChiTaRS3.1			BI113920	RIMS3	chr1	41088627	+	CCT7	chr2	73474979	+
intron-intron	ENST00000523492	ENST00000523492		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000523492	ENST00000286234		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000523492	ENST00000518057		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000286234	ENST00000523492		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000286234	ENST00000286234		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000286234	ENST00000518057		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000518057	ENST00000523492		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000518057	ENST00000286234		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000518057	ENST00000518057		ChiTaRS3.1			BQ286180	DEPTOR	chr8	120942296	-	DEPTOR	chr8	120940654	+
intron-intron	ENST00000361151	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361151	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000361451	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588933	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588221	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592904	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000590306	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000592292	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000264674		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000392736		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000464456		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000472280		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000494292		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000468789		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000460814		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000433243		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000588013	ENST00000485957		ChiTaRS3.1			BF917110	ZNF266	chr19	9524224	-	MECOM	chr3	169326285	+
intron-intron	ENST00000348993	ENST00000370192		ChiTaRS3.1			BM983460	SCAND2P	chr15	85177797	-	DPYD	chr1	97679323	+
intron-intron	ENST00000348993	ENST00000474241		ChiTaRS3.1			BM983460	SCAND2P	chr15	85177797	-	DPYD	chr1	97679323	+
intron-intron	ENST00000348993	ENST00000423006		ChiTaRS3.1			BM983460	SCAND2P	chr15	85177797	-	DPYD	chr1	97679323	+
intron-intron	ENST00000348993	ENST00000306031		ChiTaRS3.1			BM983460	SCAND2P	chr15	85177797	-	DPYD	chr1	97679323	+
5CDS-intron	ENST00000322611	ENST00000342907		ChiTaRS3.1			AW895060	BASP1	chr5	17275879	+	ST3GAL2	chr16	70417611	+
5CDS-intron	ENST00000322611	ENST00000393640		ChiTaRS3.1			AW895060	BASP1	chr5	17275879	+	ST3GAL2	chr16	70417611	+
5CDS-intron	ENST00000322611	ENST00000566097		ChiTaRS3.1			AW895060	BASP1	chr5	17275879	+	ST3GAL2	chr16	70417611	+
intron-3UTR	ENST00000483612	ENST00000377658		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000483612	ENST00000377663		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000483612	ENST00000467612		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000483612	ENST00000463043		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000292401	ENST00000377658		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000292401	ENST00000377663		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000292401	ENST00000467612		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000292401	ENST00000463043		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000411734	ENST00000377658		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000411734	ENST00000377663		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000411734	ENST00000467612		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000411734	ENST00000463043		ChiTaRS3.1			AI657140	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
3UTR-3CDS	ENST00000328504	ENST00000282096		ChiTaRS3.1			AI969380	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
3UTR-3CDS	ENST00000328504	ENST00000455098		ChiTaRS3.1			AI969380	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
3UTR-3UTR	ENST00000328504	ENST00000534317		ChiTaRS3.1			AI969380	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-3CDS	ENST00000558553	ENST00000282096		ChiTaRS3.1			AI969380	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-3CDS	ENST00000558553	ENST00000455098		ChiTaRS3.1			AI969380	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-3UTR	ENST00000558553	ENST00000534317		ChiTaRS3.1			AI969380	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
3UTR-3CDS	ENST00000405315	ENST00000405315		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000405315	ENST00000407032		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000405315	ENST00000485798		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000405315	ENST00000263273		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000407032	ENST00000405315		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000407032	ENST00000407032		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000407032	ENST00000485798		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000407032	ENST00000263273		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3CDS	ENST00000485798	ENST00000405315		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3CDS	ENST00000485798	ENST00000407032		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000485798	ENST00000485798		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000485798	ENST00000263273		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000263273	ENST00000405315		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000263273	ENST00000407032		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000263273	ENST00000485798		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000263273	ENST00000263273		ChiTaRS3.1			BG829250	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000438512	ENST00000406785		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000542756		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000403092		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000405901		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000402441		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000405269		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000542024		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000332839		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000406391		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000438512	ENST00000408028		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000406785		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000542756		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000403092		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000405901		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000402441		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000405269		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000542024		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000332839		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000406391		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000441631	ENST00000408028		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000406785		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000542756		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000403092		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000405901		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000402441		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000405269		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000542024		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000332839		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000406391		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000346752	ENST00000408028		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000406785		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000542756		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000403092		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000405901		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000402441		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000405269		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000542024		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000332839		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000406391		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
3UTR-intron	ENST00000361842	ENST00000408028		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000406785		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000542756		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000403092		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000405901		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000402441		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000405269		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000542024		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000332839		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000406391		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000576459	ENST00000408028		ChiTaRS3.1			BF986040	XAF1	chr17	6678695	-	SLC8A1	chr2	40655518	-
intron-intron	ENST00000507810	ENST00000507810		ChiTaRS3.1			AW868580	EPB41L4A	chr5	111569281	+	EPB41L4A	chr5	111568825	-
intron-intron	ENST00000507810	ENST00000261486		ChiTaRS3.1			AW868580	EPB41L4A	chr5	111569281	+	EPB41L4A	chr5	111568825	-
intron-intron	ENST00000261486	ENST00000507810		ChiTaRS3.1			AW868580	EPB41L4A	chr5	111569281	+	EPB41L4A	chr5	111568825	-
intron-intron	ENST00000261486	ENST00000261486		ChiTaRS3.1			AW868580	EPB41L4A	chr5	111569281	+	EPB41L4A	chr5	111568825	-
intron-5UTR	ENST00000484910	ENST00000484910		ChiTaRS3.1			H93740	RD3	chr1	211649943	+	RD3	chr1	211650404	-
intron-3UTR	ENST00000484910	ENST00000367002		ChiTaRS3.1			H93740	RD3	chr1	211649943	+	RD3	chr1	211650404	-
intron-5UTR	ENST00000367002	ENST00000484910		ChiTaRS3.1			H93740	RD3	chr1	211649943	+	RD3	chr1	211650404	-
intron-3UTR	ENST00000367002	ENST00000367002		ChiTaRS3.1			H93740	RD3	chr1	211649943	+	RD3	chr1	211650404	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			CB265780	MALAT1	chr11	65267648	+	MALAT1	chr11	65266832	+
intron-3CDS	ENST00000260402	ENST00000260402		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000260402	ENST00000557821		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000260402	ENST00000456256		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-intron	ENST00000260402	ENST00000543785		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000557821	ENST00000260402		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000557821	ENST00000557821		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000557821	ENST00000456256		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-intron	ENST00000557821	ENST00000543785		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000456256	ENST00000260402		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000456256	ENST00000557821		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000456256	ENST00000456256		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-intron	ENST00000456256	ENST00000543785		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000543785	ENST00000260402		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000543785	ENST00000557821		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-3CDS	ENST00000543785	ENST00000456256		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
intron-intron	ENST00000543785	ENST00000543785		ChiTaRS3.1			BF874520	PLCB2	chr15	40586565	+	PLCB2	chr15	40588564	-
Frame-shit	ENST00000425967	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000425967	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000425967	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000425967	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397091	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397091	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397091	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397091	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000447712	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000447712	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000447712	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000447712	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000341462	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000341462	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000341462	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000341462	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000532791	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000532791	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000532791	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000532791	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397113	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397113	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397113	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397113	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000356207	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000356207	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000356207	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000356207	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000335922	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000335922	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000335922	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000335922	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000326324	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000326324	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000326324	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000326324	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397103	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
In-frame	ENST00000397103	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397103	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397103	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000397108	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
Frame-shit	ENST00000397108	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397108	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
5CDS-intron	ENST00000397108	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-3CDS	ENST00000496629	ENST00000305877		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-3CDS	ENST00000496629	ENST00000359540		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-intron	ENST00000496629	ENST00000398512		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-intron	ENST00000496629	ENST00000436990		ChiTaRS3.1			AB742171	FGFR1	chr8	38277056	-	BCR	chr22	23610592	+
intron-intron	ENST00000523819	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000523819	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000523819	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000523819	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
3UTR-intron	ENST00000518448	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
3UTR-intron	ENST00000518448	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
3UTR-intron	ENST00000518448	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
3UTR-intron	ENST00000518448	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000536633	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000536633	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000536633	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000536633	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000546351	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000546351	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000546351	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000546351	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000318462	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000318462	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000318462	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000318462	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000276699	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000276699	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000276699	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000276699	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000522648	ENST00000344400		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000522648	ENST00000423565		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000522648	ENST00000354475		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000522648	ENST00000485942		ChiTaRS3.1			AW365300	FAM83A	chr8	124221625	+	WDR91	chr7	134872296	+
intron-intron	ENST00000514135	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000514135	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000514135	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000514135	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000514135	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000514135	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000514135	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000296595	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000506536	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000512429	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000509387	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000511218	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000514135		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000296595		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000506536		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000512429		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000509387		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000511218		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
intron-intron	ENST00000515293	ENST00000515293		ChiTaRS3.1			AF138860	TMEM161B	chr5	87517070	+	TMEM161B	chr5	87514253	+
3UTR-intron	ENST00000283006	ENST00000468758		ChiTaRS3.1			AI738610	CENPH	chr5	68506034	-	MGAT5	chr2	135164226	-
3UTR-intron	ENST00000283006	ENST00000409645		ChiTaRS3.1			AI738610	CENPH	chr5	68506034	-	MGAT5	chr2	135164226	-
3UTR-intron	ENST00000283006	ENST00000281923		ChiTaRS3.1			AI738610	CENPH	chr5	68506034	-	MGAT5	chr2	135164226	-
3UTR-intron	ENST00000515001	ENST00000468758		ChiTaRS3.1			AI738610	CENPH	chr5	68506034	-	MGAT5	chr2	135164226	-
3UTR-intron	ENST00000515001	ENST00000409645		ChiTaRS3.1			AI738610	CENPH	chr5	68506034	-	MGAT5	chr2	135164226	-
3UTR-intron	ENST00000515001	ENST00000281923		ChiTaRS3.1			AI738610	CENPH	chr5	68506034	-	MGAT5	chr2	135164226	-
5UTR-intron	ENST00000402744	ENST00000447750		ChiTaRS3.1			DA080700	CPE	chr4	166300353	+	GDI1	chrX	153668519	+
5UTR-intron	ENST00000402744	ENST00000465640		ChiTaRS3.1			DA080700	CPE	chr4	166300353	+	GDI1	chrX	153668519	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266510	FLI1	chr11	128667041	+	EWSR1	chr22	29684818	+
intron-3UTR	ENST00000521788	ENST00000291547		ChiTaRS3.1			BE083950	COLEC10	chr8	120106813	-	PKNOX1	chr21	44450290	+
intron-3UTR	ENST00000521788	ENST00000432907		ChiTaRS3.1			BE083950	COLEC10	chr8	120106813	-	PKNOX1	chr21	44450290	+
intron-intron	ENST00000521788	ENST00000607150		ChiTaRS3.1			BE083950	COLEC10	chr8	120106813	-	PKNOX1	chr21	44450290	+
intron-3UTR	ENST00000332843	ENST00000291547		ChiTaRS3.1			BE083950	COLEC10	chr8	120106813	-	PKNOX1	chr21	44450290	+
intron-3UTR	ENST00000332843	ENST00000432907		ChiTaRS3.1			BE083950	COLEC10	chr8	120106813	-	PKNOX1	chr21	44450290	+
intron-intron	ENST00000332843	ENST00000607150		ChiTaRS3.1			BE083950	COLEC10	chr8	120106813	-	PKNOX1	chr21	44450290	+
intron-3CDS	ENST00000296471	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000296471	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000296471	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000296471	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000488336	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000488336	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000488336	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000488336	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000463537	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000463537	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000463537	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000463537	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000477224	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000477224	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000477224	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000477224	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000467248	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000467248	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000467248	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000467248	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000466940	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000466940	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000466940	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000466940	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000498324	ENST00000316803		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000498324	ENST00000288616		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000498324	ENST00000351200		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-3CDS	ENST00000498324	ENST00000453000		ChiTaRS3.1			X94700	CAMKV	chr3	49899746	-	CABP1	chr12	121098600	+
intron-intron	ENST00000337620	ENST00000560305		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000561011		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000559911		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558113		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000358005		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000416810		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558750		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558871		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000560109		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000560305		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000561011		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000559911		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558113		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000358005		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000416810		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558750		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558871		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000560109		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000560305		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000561011		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000559911		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558113		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000358005		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000416810		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558750		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558871		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000560109		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000560305		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000561011		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000559911		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558113		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000358005		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000416810		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558750		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558871		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000560109		ChiTaRS3.1			AI436690	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-3CDS	ENST00000342160	ENST00000342160		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000342160	ENST00000262854		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000342160	ENST00000474288		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000342160	ENST00000218328		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000262854	ENST00000342160		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000262854	ENST00000262854		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000262854	ENST00000474288		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000262854	ENST00000218328		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000474288	ENST00000342160		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000474288	ENST00000262854		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000474288	ENST00000474288		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000474288	ENST00000218328		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000218328	ENST00000342160		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-3CDS	ENST00000218328	ENST00000262854		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000218328	ENST00000474288		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000218328	ENST00000218328		ChiTaRS3.1			BP231230	HUWE1	chrX	53563609	-	HUWE1	chrX	53576121	-
intron-intron	ENST00000569256	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569256	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000248098	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
3UTR-intron	ENST00000562684	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000561516	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382711	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000569765	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000218200		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000370471		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000370477		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000334557		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000439526		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000370475		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000370470		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000440235		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000382710	ENST00000492846		ChiTaRS3.1			BF083070	HN1L	chr16	1749663	+	FMR1	chrX	147027136	-
intron-intron	ENST00000396353	ENST00000396353		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396353	ENST00000396355		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396353	ENST00000396354		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396353	ENST00000342673		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396353	ENST00000571896		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396355	ENST00000396353		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396355	ENST00000396355		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396355	ENST00000396354		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396355	ENST00000342673		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396355	ENST00000571896		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396354	ENST00000396353		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396354	ENST00000396355		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396354	ENST00000396354		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396354	ENST00000342673		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000396354	ENST00000571896		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000342673	ENST00000396353		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000342673	ENST00000396355		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000342673	ENST00000396354		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000342673	ENST00000342673		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000342673	ENST00000571896		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000571896	ENST00000396353		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000571896	ENST00000396355		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000571896	ENST00000396354		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000571896	ENST00000342673		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-intron	ENST00000571896	ENST00000571896		ChiTaRS3.1			AA516440	NDE1	chr16	15802694	+	NDE1	chr16	15797691	+
intron-3CDS	ENST00000520791	ENST00000470487		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000520791	ENST00000309027		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000523368	ENST00000470487		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000523368	ENST00000309027		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000297565	ENST00000470487		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000297565	ENST00000309027		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000435298	ENST00000470487		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000435298	ENST00000309027		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000522510	ENST00000470487		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000522510	ENST00000309027		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000457907	ENST00000470487		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000457907	ENST00000309027		ChiTaRS3.1			AA568260	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
5CDS-intron	ENST00000301244	ENST00000304222		ChiTaRS3.1			BF931290	SPINT2	chr19	38782554	+	ADORA2B	chr17	15853876	-
5CDS-intron	ENST00000587090	ENST00000304222		ChiTaRS3.1			BF931290	SPINT2	chr19	38782554	+	ADORA2B	chr17	15853876	-
5CDS-intron	ENST00000454580	ENST00000304222		ChiTaRS3.1			BF931290	SPINT2	chr19	38782554	+	ADORA2B	chr17	15853876	-
intron-intron	ENST00000294168	ENST00000295797		ChiTaRS3.1			BQ332890	TAF6L	chr11	62550142	+	PRKCI	chr3	170003962	+
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			BQ346800	FNBP1	chr9	132713116	+	FNBP1	chr9	132705328	+
intron-3CDS	ENST00000491671	ENST00000257934		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000491671	ENST00000552462		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-intron	ENST00000491671	ENST00000550026		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000216214	ENST00000257934		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000216214	ENST00000552462		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-intron	ENST00000216214	ENST00000550026		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000441876	ENST00000257934		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000441876	ENST00000552462		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-intron	ENST00000441876	ENST00000550026		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000405673	ENST00000257934		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000405673	ENST00000552462		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-intron	ENST00000405673	ENST00000550026		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000405548	ENST00000257934		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-3CDS	ENST00000405548	ENST00000552462		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-intron	ENST00000405548	ENST00000550026		ChiTaRS3.1			AL046060	FAM118A	chr22	45732948	+	ESPL1	chr12	53679941	+
intron-intron	ENST00000355957	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000355957	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000355957	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000355957	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000355957	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355957	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361770	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361770	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361770	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361770	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361770	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000359617	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000359617	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000359617	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000359617	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000359617	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371141	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371141	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371141	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371141	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371141	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371132	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371132	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371132	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000371132	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000371132	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000496003	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000496003	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000496003	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000496003	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000496003	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000358029	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000358029	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000358029	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000358029	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000358029	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000356462		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000400345		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000589054		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361830	ENST00000256832		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361830	ENST00000382850		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000256830		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000588516		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361830	ENST00000456986		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000435432		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000357895		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000586263		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-3UTR	ENST00000361830	ENST00000456173		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000361830	ENST00000431212		ChiTaRS3.1			BF378130	STX16	chr20	57236433	+	NEDD4L	chr18	56065315	-
intron-intron	ENST00000355540	ENST00000314100		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000355540	ENST00000481247		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000355540	ENST00000419706		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000355540	ENST00000408958		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000355540	ENST00000403056		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000359863	ENST00000314100		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000359863	ENST00000481247		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000359863	ENST00000419706		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000359863	ENST00000408958		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000359863	ENST00000403056		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000446306	ENST00000314100		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000446306	ENST00000481247		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000446306	ENST00000419706		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000446306	ENST00000408958		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
intron-intron	ENST00000446306	ENST00000403056		ChiTaRS3.1			CV418360	TRRAP	chr7	98564269	-	BTBD9	chr6	38299240	+
3UTR-3UTR	ENST00000377060	ENST00000377060		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
3UTR-3UTR	ENST00000377060	ENST00000305510		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
3UTR-intron	ENST00000377060	ENST00000480035		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
3UTR-3UTR	ENST00000305510	ENST00000377060		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
3UTR-3UTR	ENST00000305510	ENST00000305510		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
3UTR-intron	ENST00000305510	ENST00000480035		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
intron-3UTR	ENST00000480035	ENST00000377060		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
intron-3UTR	ENST00000480035	ENST00000305510		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
intron-intron	ENST00000480035	ENST00000480035		ChiTaRS3.1			AA229290	CNNM3	chr2	97499141	+	CNNM3	chr2	97499259	-
intron-3CDS	ENST00000330387	ENST00000325083		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000330387	ENST00000519253		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000330387	ENST00000524226		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000330387	ENST00000518537		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000330387	ENST00000518936		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000330387	ENST00000327578		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000456390	ENST00000325083		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000456390	ENST00000519253		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000456390	ENST00000524226		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000456390	ENST00000518537		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000456390	ENST00000518936		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000456390	ENST00000327578		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000452463	ENST00000325083		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000452463	ENST00000519253		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000452463	ENST00000524226		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000452463	ENST00000518537		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000452463	ENST00000518936		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000452463	ENST00000327578		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000458726	ENST00000325083		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000458726	ENST00000519253		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000458726	ENST00000524226		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000458726	ENST00000518537		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000458726	ENST00000518936		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000458726	ENST00000327578		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000468127	ENST00000325083		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000468127	ENST00000519253		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-3CDS	ENST00000468127	ENST00000524226		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000468127	ENST00000518537		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000468127	ENST00000518936		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
intron-intron	ENST00000468127	ENST00000327578		ChiTaRS3.1			BF369730	CREB3L2	chr7	137561684	+	PCM1	chr8	17869231	-
3UTR-3UTR	ENST00000405995	ENST00000405995		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000405995	ENST00000357304		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-intron	ENST00000405995	ENST00000458550		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-intron	ENST00000405995	ENST00000372249		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000405995	ENST00000465931		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000357304	ENST00000405995		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000357304	ENST00000357304		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-intron	ENST00000357304	ENST00000458550		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-intron	ENST00000357304	ENST00000372249		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000357304	ENST00000465931		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-3UTR	ENST00000458550	ENST00000405995		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-3UTR	ENST00000458550	ENST00000357304		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-intron	ENST00000458550	ENST00000458550		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-intron	ENST00000458550	ENST00000372249		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-3UTR	ENST00000458550	ENST00000465931		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-3UTR	ENST00000372249	ENST00000405995		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-3UTR	ENST00000372249	ENST00000357304		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-intron	ENST00000372249	ENST00000458550		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-intron	ENST00000372249	ENST00000372249		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-3UTR	ENST00000372249	ENST00000465931		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000465931	ENST00000405995		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000465931	ENST00000357304		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-intron	ENST00000465931	ENST00000458550		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-intron	ENST00000465931	ENST00000372249		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
3UTR-3UTR	ENST00000465931	ENST00000465931		ChiTaRS3.1			BC058910	PRRC2B	chr9	134372866	-	PRRC2B	chr9	134373420	+
intron-intron	ENST00000544604	ENST00000544604		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000544604	ENST00000332811		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000544604	ENST00000402174		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000544604	ENST00000406323		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000332811	ENST00000544604		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000332811	ENST00000332811		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000332811	ENST00000402174		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000332811	ENST00000406323		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000402174	ENST00000544604		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000402174	ENST00000332811		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000402174	ENST00000402174		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000402174	ENST00000406323		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000406323	ENST00000544604		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000406323	ENST00000332811		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000406323	ENST00000402174		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-intron	ENST00000406323	ENST00000406323		ChiTaRS3.1			BF331840	ZNRF3	chr22	29358551	-	ZNRF3	chr22	29358899	+
intron-3CDS	ENST00000306125	ENST00000306125		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000306125	ENST00000414533		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000306125	ENST00000470225		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000306125	ENST00000420147		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000414533	ENST00000306125		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000414533	ENST00000414533		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000414533	ENST00000470225		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000414533	ENST00000420147		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000470225	ENST00000306125		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000470225	ENST00000414533		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000470225	ENST00000470225		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000470225	ENST00000420147		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000420147	ENST00000306125		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-3CDS	ENST00000420147	ENST00000414533		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000420147	ENST00000470225		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
intron-intron	ENST00000420147	ENST00000420147		ChiTaRS3.1			BE828390	QARS	chr3	49137237	-	QARS	chr3	49136649	+
3UTR-3UTR	ENST00000254770	ENST00000254770		ChiTaRS3.1			BF814820	LANCL2	chr7	55500347	-	LANCL2	chr7	55500942	-
3UTR-intron	ENST00000254770	ENST00000486376		ChiTaRS3.1			BF814820	LANCL2	chr7	55500347	-	LANCL2	chr7	55500942	-
intron-3UTR	ENST00000486376	ENST00000254770		ChiTaRS3.1			BF814820	LANCL2	chr7	55500347	-	LANCL2	chr7	55500942	-
intron-intron	ENST00000486376	ENST00000486376		ChiTaRS3.1			BF814820	LANCL2	chr7	55500347	-	LANCL2	chr7	55500942	-
intron-3CDS	ENST00000462876	ENST00000033079		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000462876	ENST00000425075		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000462876	ENST00000420893		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000222693	ENST00000033079		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000222693	ENST00000425075		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000222693	ENST00000420893		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000343213	ENST00000033079		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000343213	ENST00000425075		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000343213	ENST00000420893		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000393480	ENST00000033079		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000393480	ENST00000425075		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-3CDS	ENST00000393480	ENST00000420893		ChiTaRS3.1			DB285980	CAV2	chr7	116139408	-	FAM13B	chr5	137290067	-
intron-intron	ENST00000444376	ENST00000539993		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000444376	ENST00000518698		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000444376	ENST00000349492		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000444376	ENST00000523686		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000444376	ENST00000348340		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000444376	ENST00000337103		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000444376	ENST00000325233		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000539993		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000518698		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000349492		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000523686		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000348340		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000337103		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
intron-intron	ENST00000283179	ENST00000325233		ChiTaRS3.1			AW081080	HNRNPU	chr1	245013776	+	C8orf34	chr8	69469780	+
In-frame	ENST00000330386	ENST00000310473		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000330386	ENST00000536983		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
5CDS-intron	ENST00000330386	ENST00000542615		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000389561	ENST00000310473		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000389561	ENST00000536983		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
5CDS-intron	ENST00000389561	ENST00000542615		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000333577	ENST00000310473		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000333577	ENST00000536983		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
5CDS-intron	ENST00000333577	ENST00000542615		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000332482	ENST00000310473		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000332482	ENST00000536983		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
5CDS-intron	ENST00000332482	ENST00000542615		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000389562	ENST00000310473		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
In-frame	ENST00000389562	ENST00000536983		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
5CDS-intron	ENST00000389562	ENST00000542615		ChiTaRS3.1			BF763210	EP400	chr12	132466644	-	UCP2	chr11	73689079	-
3UTR-intron	ENST00000324306	ENST00000563480		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000324306	ENST00000395589		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000324306	ENST00000316634		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000324306	ENST00000307979		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000324306	ENST00000566658		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
intron-intron	ENST00000426572	ENST00000563480		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
intron-intron	ENST00000426572	ENST00000395589		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
intron-intron	ENST00000426572	ENST00000316634		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
intron-intron	ENST00000426572	ENST00000307979		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
intron-intron	ENST00000426572	ENST00000566658		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000535170	ENST00000563480		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000535170	ENST00000395589		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000535170	ENST00000316634		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000535170	ENST00000307979		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
3UTR-intron	ENST00000535170	ENST00000566658		ChiTaRS3.1			BM457580	ZKSCAN1	chr7	99633738	+	SNAPC5	chr15	66785751	-
intron-3CDS	ENST00000361781	ENST00000252936		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361781	ENST00000417178		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361781	ENST00000368563		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361781	ENST00000368562		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361781	ENST00000543663		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-intron	ENST00000361781	ENST00000470829		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000429490	ENST00000252936		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000429490	ENST00000417178		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000429490	ENST00000368563		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000429490	ENST00000368562		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000429490	ENST00000543663		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-intron	ENST00000429490	ENST00000470829		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000492601	ENST00000252936		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000492601	ENST00000417178		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000492601	ENST00000368563		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000492601	ENST00000368562		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000492601	ENST00000543663		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-intron	ENST00000492601	ENST00000470829		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361543	ENST00000252936		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361543	ENST00000417178		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361543	ENST00000368563		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361543	ENST00000368562		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-3CDS	ENST00000361543	ENST00000543663		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
intron-intron	ENST00000361543	ENST00000470829		ChiTaRS3.1			BF917180	SGMS1	chr10	52066718	-	TUBGCP2	chr10	135103347	-
In-frame	ENST00000323688	ENST00000323688		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000323688	ENST00000529010		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000323688	ENST00000458064		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
5CDS-intron	ENST00000323688	ENST00000532240		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000529010	ENST00000323688		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000529010	ENST00000529010		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000529010	ENST00000458064		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
5CDS-intron	ENST00000529010	ENST00000532240		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000458064	ENST00000323688		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000458064	ENST00000529010		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
In-frame	ENST00000458064	ENST00000458064		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
5CDS-intron	ENST00000458064	ENST00000532240		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
intron-3CDS	ENST00000532240	ENST00000323688		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
intron-3CDS	ENST00000532240	ENST00000529010		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
intron-3CDS	ENST00000532240	ENST00000458064		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
intron-intron	ENST00000532240	ENST00000532240		ChiTaRS3.1			CA311500	NUCB2	chr11	17331183	-	NUCB2	chr11	17323342	+
intron-intron	ENST00000369144	ENST00000308482		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000369144	ENST00000468950		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000369144	ENST00000289175		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000369144	ENST00000244815		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000369144	ENST00000392000		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000541549	ENST00000308482		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000541549	ENST00000468950		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000541549	ENST00000289175		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000541549	ENST00000244815		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000541549	ENST00000392000		ChiTaRS3.1			BF752470	EIF3A	chr10	120816354	+	LRRFIP1	chr2	238672005	-
intron-intron	ENST00000393829	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000393829	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000546249	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000546249	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000537728	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000537728	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000264649	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000264649	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000585525	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000585525	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000343619	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000343619	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000544137	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000544137	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000587797	ENST00000413834		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
3UTR-intron	ENST00000587797	ENST00000437572		ChiTaRS3.1			BM991690	ATP6V0A1	chr17	40673946	-	ATP5J2-PTCD1	chr7	99057153	+
intron-intron	ENST00000326956	ENST00000282538		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000326956	ENST00000498387		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000326956	ENST00000454381		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000417664	ENST00000282538		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000417664	ENST00000498387		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000417664	ENST00000454381		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000371320	ENST00000282538		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000371320	ENST00000498387		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000371320	ENST00000454381		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000371319	ENST00000282538		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000371319	ENST00000498387		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000371319	ENST00000454381		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000357475	ENST00000282538		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000357475	ENST00000498387		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000357475	ENST00000454381		ChiTaRS3.1			CV411220	SSBP3	chr1	54865574	+	GADL1	chr3	30824337	-
intron-intron	ENST00000508198	ENST00000508198		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000508198	ENST00000435205		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000508198	ENST00000505231		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000435205	ENST00000508198		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000435205	ENST00000435205		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000435205	ENST00000505231		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000505231	ENST00000508198		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000505231	ENST00000435205		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
intron-intron	ENST00000505231	ENST00000505231		ChiTaRS3.1			AI005350	FAM160A1	chr4	152538153	-	FAM160A1	chr4	152538665	-
3UTR-3CDS	ENST00000314616	ENST00000233242		ChiTaRS3.1			AI052800	SUPT6H	chr17	27029052	-	APOB	chr2	21234785	+
3UTR-intron	ENST00000314616	ENST00000399256		ChiTaRS3.1			AI052800	SUPT6H	chr17	27029052	-	APOB	chr2	21234785	+
intron-3CDS	ENST00000347486	ENST00000233242		ChiTaRS3.1			AI052800	SUPT6H	chr17	27029052	-	APOB	chr2	21234785	+
intron-intron	ENST00000347486	ENST00000399256		ChiTaRS3.1			AI052800	SUPT6H	chr17	27029052	-	APOB	chr2	21234785	+
In-frame	ENST00000323064	ENST00000262450		ChiTaRS3.1			BF363390	AGBL5	chr2	27276821	-	CHD5	chr1	6214829	-
5CDS-5UTR	ENST00000323064	ENST00000378021		ChiTaRS3.1			BF363390	AGBL5	chr2	27276821	-	CHD5	chr1	6214829	-
In-frame	ENST00000360131	ENST00000262450		ChiTaRS3.1			BF363390	AGBL5	chr2	27276821	-	CHD5	chr1	6214829	-
5CDS-5UTR	ENST00000360131	ENST00000378021		ChiTaRS3.1			BF363390	AGBL5	chr2	27276821	-	CHD5	chr1	6214829	-
3UTR-intron	ENST00000534336	ENST00000472193		ChiTaRS3.1			BF750590	MALAT1	chr11	65268183	+	PLCL1	chr2	198907251	+
3UTR-intron	ENST00000534336	ENST00000428675		ChiTaRS3.1			BF750590	MALAT1	chr11	65268183	+	PLCL1	chr2	198907251	+
3UTR-intron	ENST00000534336	ENST00000437704		ChiTaRS3.1			BF750590	MALAT1	chr11	65268183	+	PLCL1	chr2	198907251	+
3UTR-3CDS	ENST00000268379	ENST00000268379		ChiTaRS3.1			AW089520	UQCRC2	chr16	21994572	-	UQCRC2	chr16	21994458	+
3UTR-3CDS	ENST00000268379	ENST00000561553		ChiTaRS3.1			AW089520	UQCRC2	chr16	21994572	-	UQCRC2	chr16	21994458	+
3UTR-3CDS	ENST00000561553	ENST00000268379		ChiTaRS3.1			AW089520	UQCRC2	chr16	21994572	-	UQCRC2	chr16	21994458	+
3UTR-3CDS	ENST00000561553	ENST00000561553		ChiTaRS3.1			AW089520	UQCRC2	chr16	21994572	-	UQCRC2	chr16	21994458	+
3UTR-3UTR	ENST00000229270	ENST00000349048		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-3UTR	ENST00000229270	ENST00000403390		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-intron	ENST00000229270	ENST00000496824		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-3UTR	ENST00000396705	ENST00000349048		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-3UTR	ENST00000396705	ENST00000403390		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-intron	ENST00000396705	ENST00000496824		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
intron-3UTR	ENST00000488464	ENST00000349048		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
intron-3UTR	ENST00000488464	ENST00000403390		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
intron-intron	ENST00000488464	ENST00000496824		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-3UTR	ENST00000535434	ENST00000349048		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-3UTR	ENST00000535434	ENST00000403390		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
3UTR-intron	ENST00000535434	ENST00000496824		ChiTaRS3.1			AF086180	TPI1	chr12	6979877	-	PFKL	chr21	45747008	+
intron-intron	ENST00000591247	ENST00000554438		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000591247	ENST00000245448		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000591247	ENST00000426751		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000591247	ENST00000311459		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000591247	ENST00000358473		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000293406	ENST00000554438		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000293406	ENST00000245448		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000293406	ENST00000426751		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000293406	ENST00000311459		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000293406	ENST00000358473		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000585388	ENST00000554438		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000585388	ENST00000245448		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000585388	ENST00000426751		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000585388	ENST00000311459		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000585388	ENST00000358473		ChiTaRS3.1			AW608430	LSM12	chr17	42131530	-	ATP5S	chr14	50796842	+
intron-intron	ENST00000367463	ENST00000263640		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000367463	ENST00000409283		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000367463	ENST00000434821		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000367463	ENST00000410057		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000367463	ENST00000487456		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000466695	ENST00000263640		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000466695	ENST00000409283		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000466695	ENST00000434821		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000466695	ENST00000410057		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
intron-intron	ENST00000466695	ENST00000487456		ChiTaRS3.1			BF873230	UST	chr6	149332344	-	ACVR1	chr2	158695285	-
3UTR-3UTR	ENST00000265295	ENST00000265295		ChiTaRS3.1			BQ921180	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
3UTR-intron	ENST00000265295	ENST00000510751		ChiTaRS3.1			BQ921180	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
intron-3UTR	ENST00000510751	ENST00000265295		ChiTaRS3.1			BQ921180	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
intron-intron	ENST00000510751	ENST00000510751		ChiTaRS3.1			BQ921180	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
intron-3CDS	ENST00000539317	ENST00000540468		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000539919		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000258091		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000398422		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000537131		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000538797		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000539317	ENST00000473786		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000540468		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000539919		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000258091		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000398422		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000537131		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000538797		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000487871	ENST00000473786		ChiTaRS3.1			BM809370	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000394555	ENST00000375651		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000458062		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000608703		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000430065		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000422919		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000441618		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000449876		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000433487		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394555	ENST00000452298		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000394555	ENST00000400040		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000394555	ENST00000383389		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000375651		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000458062		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000608703		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000430065		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000422919		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000441618		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000449876		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000433487		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000394554	ENST00000452298		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000394554	ENST00000400040		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000394554	ENST00000383389		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000375651		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000458062		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000608703		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000430065		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000422919		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000441618		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000449876		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000433487		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000424836	ENST00000452298		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000424836	ENST00000400040		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000424836	ENST00000383389		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000375651		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000458062		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000608703		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000430065		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000422919		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000441618		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000449876		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000433487		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000355426	ENST00000452298		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000355426	ENST00000400040		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000355426	ENST00000383389		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000375651		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000458062		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000608703		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000430065		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000422919		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000441618		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000449876		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000433487		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-intron	ENST00000497698	ENST00000452298		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000497698	ENST00000400040		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000497698	ENST00000383389		ChiTaRS3.1			D57450	EFEMP1	chr2	56093809	+	HSPA1A	chr6	3079167	+
intron-3UTR	ENST00000445552	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000445552	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000445552	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000337845	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000337845	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000337845	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000329240	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000329240	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000329240	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000573185	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000573185	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000573185	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000570550	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000570550	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000570550	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000336125	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000336125	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000336125	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000549904	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000549904	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000549904	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000550273	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000550273	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000550273	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000549665	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000549665	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000549665	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-3UTR	ENST00000553155	ENST00000380079		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000553155	ENST00000301959		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000553155	ENST00000414498		ChiTaRS3.1			BG679330	ARL17A	chr17	1207169	-	STEAP4	chr7	87907029	-
intron-intron	ENST00000336470	ENST00000336470		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000336470	ENST00000360845		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000336470	ENST00000489691		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000360845	ENST00000336470		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000360845	ENST00000360845		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000360845	ENST00000489691		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000489691	ENST00000336470		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000489691	ENST00000360845		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000489691	ENST00000489691		ChiTaRS3.1			BE890790	GNL3L	chrX	54588270	-	GNL3L	chrX	54588320	+
intron-intron	ENST00000336578	ENST00000336578		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000336578	ENST00000358769		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000336578	ENST00000309049		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000336578	ENST00000432941		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000336578	ENST00000495025		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000358769	ENST00000336578		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000358769	ENST00000358769		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000358769	ENST00000309049		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000358769	ENST00000432941		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000358769	ENST00000495025		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000309049	ENST00000336578		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000309049	ENST00000358769		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000309049	ENST00000309049		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000309049	ENST00000432941		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000309049	ENST00000495025		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000432941	ENST00000336578		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000432941	ENST00000358769		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000432941	ENST00000309049		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000432941	ENST00000432941		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000432941	ENST00000495025		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000495025	ENST00000336578		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000495025	ENST00000358769		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000495025	ENST00000309049		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000495025	ENST00000432941		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-intron	ENST00000495025	ENST00000495025		ChiTaRS3.1			L32610	PBLD	chr10	70091828	-	PBLD	chr10	70091940	+
intron-3UTR	ENST00000294072	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000426130	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000540317	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000447532	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000546151	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000544118	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000536915	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
intron-3UTR	ENST00000539890	ENST00000295628		ChiTaRS3.1			AW262920	CYB561A3	chr11	61128203	+	LRRC58	chr3	120046418	+
In-frame	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
In-frame	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF024540	KMT2A	chr11	118353215	+	KMT2A	chr11	118339488	+
intron-intron	ENST00000252674	ENST00000534358		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000252674	ENST00000389506		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000252674	ENST00000354520		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000252674	ENST00000420751		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000585588	ENST00000534358		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000585588	ENST00000389506		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000585588	ENST00000354520		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000585588	ENST00000420751		ChiTaRS3.1			AM949725	MLLT1	chr19	6276645	-	KMT2A	chr11	118355687	+
intron-intron	ENST00000396324	ENST00000566228		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000396324	ENST00000323433		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000396324	ENST00000306030		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000396324	ENST00000568359		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000452625	ENST00000566228		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000452625	ENST00000323433		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000452625	ENST00000306030		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000452625	ENST00000568359		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000576790	ENST00000566228		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000576790	ENST00000323433		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000576790	ENST00000306030		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000576790	ENST00000568359		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000300036	ENST00000566228		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000300036	ENST00000323433		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000300036	ENST00000306030		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000300036	ENST00000568359		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000573908	ENST00000566228		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000573908	ENST00000323433		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000573908	ENST00000306030		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000573908	ENST00000568359		ChiTaRS3.1			BF917080	MYH11	chr16	15849158	-	SNX29	chr16	12363674	+
intron-intron	ENST00000588757	ENST00000588757		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000420359		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000449624		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000421097		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000590958		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000393818		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000588757		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000420359		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000449624		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000421097		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000590958		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000393818		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000588757		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000420359		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000449624		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000421097		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000590958		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000393818		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000588757		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000420359		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000449624		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000421097		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000590958		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000393818		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000588757		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000420359		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000449624		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000421097		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000590958		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000393818		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000588757		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000420359		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000449624		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000421097		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000590958		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000393818		ChiTaRS3.1			BG120370	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-3CDS	ENST00000395346	ENST00000395346		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000395346	ENST00000308360		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000395346	ENST00000543734		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-5UTR	ENST00000395346	ENST00000465444		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000308360	ENST00000395346		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000308360	ENST00000308360		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000308360	ENST00000543734		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-5UTR	ENST00000308360	ENST00000465444		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000543734	ENST00000395346		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000543734	ENST00000308360		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000543734	ENST00000543734		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-5UTR	ENST00000543734	ENST00000465444		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000465444	ENST00000395346		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000465444	ENST00000308360		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3CDS	ENST00000465444	ENST00000543734		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-5UTR	ENST00000465444	ENST00000465444		ChiTaRS3.1			W00580	PIGS	chr17	26881239	-	PIGS	chr17	26890491	-
intron-3UTR	ENST00000298310	ENST00000399640		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000298310	ENST00000319914		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000298310	ENST00000521180		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000298310	ENST00000522652		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000298310	ENST00000519435		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000382135	ENST00000399640		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000382135	ENST00000319914		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000382135	ENST00000521180		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000382135	ENST00000522652		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000382135	ENST00000519435		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000545773	ENST00000399640		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000545773	ENST00000319914		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000545773	ENST00000521180		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000545773	ENST00000522652		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000545773	ENST00000519435		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000556925	ENST00000399640		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000556925	ENST00000319914		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000556925	ENST00000521180		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000556925	ENST00000522652		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000556925	ENST00000519435		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000546046	ENST00000399640		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000546046	ENST00000319914		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000546046	ENST00000521180		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000546046	ENST00000522652		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000546046	ENST00000519435		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000556672	ENST00000399640		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000556672	ENST00000319914		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-3UTR	ENST00000556672	ENST00000521180		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000556672	ENST00000522652		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
intron-intron	ENST00000556672	ENST00000519435		ChiTaRS3.1			BI005060	NEMF	chr14	50256016	+	ST3GAL1	chr8	134468265	+
3UTR-3UTR	ENST00000371384	ENST00000371384		ChiTaRS3.1			R58190	FAM210B	chr20	54943456	-	FAM210B	chr20	54943511	+
intron-intron	ENST00000361732	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000361732	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000509734	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354868	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000521422	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000504177	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000354312	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000345306	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000305138	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000282891	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000358030	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000541428		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000379454		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000523897		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000522919		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000356457		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000518068		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000517903		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000445642		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000517847		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000522835		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000517856		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000389204		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000522603		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000379449		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000380774	ENST00000517661		ChiTaRS3.1			CD674690	RAD17	chr5	68696856	+	ASPH	chr8	62560042	-
intron-intron	ENST00000232607	ENST00000232607		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000232607	ENST00000413078		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000232607	ENST00000538242		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000232607	ENST00000536109		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000232607	ENST00000498715		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000413078	ENST00000232607		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000413078	ENST00000413078		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000413078	ENST00000538242		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000413078	ENST00000536109		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000413078	ENST00000498715		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000538242	ENST00000232607		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000538242	ENST00000413078		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000538242	ENST00000538242		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000538242	ENST00000536109		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000538242	ENST00000498715		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000536109	ENST00000232607		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000536109	ENST00000413078		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000536109	ENST00000538242		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000536109	ENST00000536109		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000536109	ENST00000498715		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000498715	ENST00000232607		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000498715	ENST00000413078		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000498715	ENST00000538242		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000498715	ENST00000536109		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-intron	ENST00000498715	ENST00000498715		ChiTaRS3.1			DW427610	UMPS	chr3	124460256	+	UMPS	chr3	124459205	+
intron-3CDS	ENST00000522684	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000535192	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000519465	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000517887	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000521059	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000395218	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000538769	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000340930	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000519419	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000430260	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000519881	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000520892	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000519635	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000517712	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000522950	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
intron-3CDS	ENST00000520151	ENST00000296452		ChiTaRS3.1			BE699810	PTK2	chr8	141828413	-	BSN	chr3	49695262	-
3UTR-intron	ENST00000347136	ENST00000401605		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000347136	ENST00000401617		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000347136	ENST00000404424		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-3UTR	ENST00000347136	ENST00000320081		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000347136	ENST00000481628		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372406	ENST00000401605		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372406	ENST00000401617		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372406	ENST00000404424		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-3UTR	ENST00000372406	ENST00000320081		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372406	ENST00000481628		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372410	ENST00000401605		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372410	ENST00000401617		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372410	ENST00000404424		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-3UTR	ENST00000372410	ENST00000320081		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
3UTR-intron	ENST00000372410	ENST00000481628		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
intron-intron	ENST00000415344	ENST00000401605		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
intron-intron	ENST00000415344	ENST00000401617		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
intron-intron	ENST00000415344	ENST00000404424		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
intron-3UTR	ENST00000415344	ENST00000320081		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
intron-intron	ENST00000415344	ENST00000481628		ChiTaRS3.1			DR979510	GPR107	chr9	132902308	-	CLIP4	chr2	29406581	+
intron-intron	ENST00000371626	ENST00000181796		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000378470		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000468747		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000378467		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000378465		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000378458		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000478076		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000378462		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000496330		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000479731		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000371626	ENST00000471815		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000181796		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000378470		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000468747		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000378467		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000378465		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000378458		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000478076		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000378462		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000496330		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000479731		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000471493	ENST00000471815		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000181796		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000378470		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000468747		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000378467		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000378465		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000378458		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000478076		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000378462		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000496330		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000479731		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000610127	ENST00000471815		ChiTaRS3.1			BF910530	TXNDC12	chr1	52499965	-	FAM107B	chr10	14616182	-
intron-intron	ENST00000525754	ENST00000405402		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000525754	ENST00000253458		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000525754	ENST00000393243		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000525754	ENST00000471070		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000310046	ENST00000405402		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000310046	ENST00000253458		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000310046	ENST00000393243		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000310046	ENST00000471070		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000531969	ENST00000405402		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000531969	ENST00000253458		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000531969	ENST00000393243		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000531969	ENST00000471070		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000529195	ENST00000405402		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000529195	ENST00000253458		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000529195	ENST00000393243		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000529195	ENST00000471070		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000524637	ENST00000405402		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000524637	ENST00000253458		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000524637	ENST00000393243		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000524637	ENST00000471070		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000531036	ENST00000405402		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000531036	ENST00000253458		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3UTR	ENST00000531036	ENST00000393243		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-intron	ENST00000531036	ENST00000471070		ChiTaRS3.1			CA337470	RBM4B	chr11	66444255	-	GSE1	chr16	85709696	+
intron-3CDS	ENST00000402034	ENST00000341520		ChiTaRS3.1			BI553600	SEC14L6	chr22	30938175	-	NCKIPSD	chr3	48719580	-
intron-intron	ENST00000402034	ENST00000416649		ChiTaRS3.1			BI553600	SEC14L6	chr22	30938175	-	NCKIPSD	chr3	48719580	-
intron-intron	ENST00000402034	ENST00000294129		ChiTaRS3.1			BI553600	SEC14L6	chr22	30938175	-	NCKIPSD	chr3	48719580	-
intron-intron	ENST00000504734	ENST00000504734		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000504734	ENST00000415618		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000504734	ENST00000452673		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000504734	ENST00000247461		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000504734	ENST00000512607		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000504734	ENST00000503126		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000415618	ENST00000504734		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000415618	ENST00000415618		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000415618	ENST00000452673		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000415618	ENST00000247461		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000415618	ENST00000512607		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000415618	ENST00000503126		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000452673	ENST00000504734		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000452673	ENST00000415618		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-3UTR	ENST00000452673	ENST00000452673		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-3UTR	ENST00000452673	ENST00000247461		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000452673	ENST00000512607		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000452673	ENST00000503126		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000247461	ENST00000504734		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000247461	ENST00000415618		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-3UTR	ENST00000247461	ENST00000452673		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-3UTR	ENST00000247461	ENST00000247461		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000247461	ENST00000512607		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
3UTR-intron	ENST00000247461	ENST00000503126		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000512607	ENST00000504734		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000512607	ENST00000415618		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000512607	ENST00000452673		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000512607	ENST00000247461		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000512607	ENST00000512607		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000512607	ENST00000503126		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000503126	ENST00000504734		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000503126	ENST00000415618		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000503126	ENST00000452673		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-3UTR	ENST00000503126	ENST00000247461		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000503126	ENST00000512607		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
intron-intron	ENST00000503126	ENST00000503126		ChiTaRS3.1			CB242580	CANX	chr5	179157569	-	CANX	chr5	179157392	+
In-frame	ENST00000259460	ENST00000259460		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
In-frame	ENST00000259460	ENST00000394125		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-intron	ENST00000259460	ENST00000373544		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-3UTR	ENST00000259460	ENST00000394124		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-3UTR	ENST00000259460	ENST00000373538		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
In-frame	ENST00000394125	ENST00000259460		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
In-frame	ENST00000394125	ENST00000394125		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-intron	ENST00000394125	ENST00000373544		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-3UTR	ENST00000394125	ENST00000394124		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-3UTR	ENST00000394125	ENST00000373538		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
intron-3CDS	ENST00000373544	ENST00000259460		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
intron-3CDS	ENST00000373544	ENST00000394125		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
intron-intron	ENST00000373544	ENST00000373544		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
intron-3UTR	ENST00000373544	ENST00000394124		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
intron-3UTR	ENST00000373544	ENST00000373538		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
3UTR-3CDS	ENST00000394124	ENST00000259460		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
3UTR-3CDS	ENST00000394124	ENST00000394125		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
3UTR-intron	ENST00000394124	ENST00000373544		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
3UTR-3UTR	ENST00000394124	ENST00000394124		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
3UTR-3UTR	ENST00000394124	ENST00000373538		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
In-frame	ENST00000373538	ENST00000259460		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
In-frame	ENST00000373538	ENST00000394125		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-intron	ENST00000373538	ENST00000373544		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-3UTR	ENST00000373538	ENST00000394124		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
5CDS-3UTR	ENST00000373538	ENST00000373538		ChiTaRS3.1			BF205330	RABEPK	chr9	127994885	-	RABEPK	chr9	127994946	+
3UTR-intron	ENST00000261267	ENST00000395146		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
3UTR-intron	ENST00000261267	ENST00000307808		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
3UTR-intron	ENST00000261267	ENST00000544085		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
3UTR-intron	ENST00000261267	ENST00000511996		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000549690	ENST00000395146		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000549690	ENST00000307808		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000549690	ENST00000544085		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000549690	ENST00000511996		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000548839	ENST00000395146		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000548839	ENST00000307808		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000548839	ENST00000544085		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000548839	ENST00000511996		ChiTaRS3.1			DB348190	LYZ	chr12	69747549	-	AFF1	chr4	87890349	-
intron-intron	ENST00000390168	ENST00000390168		ChiTaRS3.1			BE146050	H19	chr11	2019002	+	H19	chr11	2016941	+
intron-3UTR	ENST00000395169	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000359221	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000361569	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000395166	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000449047	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000395161	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000513839	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000395157	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-3UTR	ENST00000395160	ENST00000297268		ChiTaRS3.1			W60850	MAPK10	chr4	87248687	+	COL1A2	chr7	94060016	-
intron-intron	ENST00000359926	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000359926	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000371015	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000371015	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000395639	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000395639	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000541461	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000541461	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000355648	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000355648	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000395636	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000395636	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000361300	ENST00000352385		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
intron-intron	ENST00000361300	ENST00000558048		ChiTaRS3.1			CV342350	PHACTR3	chr20	58312882	+	IGDCC4	chr15	65713341	+
5UTR-3CDS	ENST00000513376	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000513376	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000513376	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000513376	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000205214	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000205214	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000205214	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000205214	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000434343	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000434343	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000434343	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000434343	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000451613	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000451613	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000451613	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000451613	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000602986	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000602986	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000602986	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000602986	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000502617	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000502617	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000502617	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000502617	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000510762	ENST00000264229		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000510762	ENST00000541073		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-3CDS	ENST00000510762	ENST00000504228		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
5UTR-intron	ENST00000510762	ENST00000505410		ChiTaRS3.1			DA411740	AASDH	chr4	57253528	-	KIAA1211	chr4	57189543	+
3UTR-3UTR	ENST00000361441	ENST00000262370		ChiTaRS3.1			BF926540	APOBEC3C	chr22	39414828	+	MGRN1	chr16	4740232	-
3UTR-3UTR	ENST00000361441	ENST00000415496		ChiTaRS3.1			BF926540	APOBEC3C	chr22	39414828	+	MGRN1	chr16	4740232	-
3UTR-3UTR	ENST00000361441	ENST00000399577		ChiTaRS3.1			BF926540	APOBEC3C	chr22	39414828	+	MGRN1	chr16	4740232	-
3UTR-intron	ENST00000361441	ENST00000588994		ChiTaRS3.1			BF926540	APOBEC3C	chr22	39414828	+	MGRN1	chr16	4740232	-
3UTR-intron	ENST00000361441	ENST00000586183		ChiTaRS3.1			BF926540	APOBEC3C	chr22	39414828	+	MGRN1	chr16	4740232	-
3UTR-intron	ENST00000361441	ENST00000588015		ChiTaRS3.1			BF926540	APOBEC3C	chr22	39414828	+	MGRN1	chr16	4740232	-
intron-intron	ENST00000225893	ENST00000225893		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000225893	ENST00000561193		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000225893	ENST00000560016		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000225893	ENST00000427275		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000561193	ENST00000225893		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000561193	ENST00000561193		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000561193	ENST00000560016		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000561193	ENST00000427275		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000560016	ENST00000225893		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000560016	ENST00000561193		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000560016	ENST00000560016		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000560016	ENST00000427275		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000427275	ENST00000225893		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000427275	ENST00000561193		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000427275	ENST00000560016		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000427275	ENST00000427275		ChiTaRS3.1			CR745050	HNF1B	chr17	36101964	-	HNF1B	chr17	36102479	-
intron-intron	ENST00000606514	ENST00000375458		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000606514	ENST00000342193		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000606514	ENST00000409184		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000606514	ENST00000392717		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000606514	ENST00000194871		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000606514	ENST00000491126		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000237283	ENST00000375458		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000237283	ENST00000342193		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000237283	ENST00000409184		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000237283	ENST00000392717		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000237283	ENST00000194871		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000237283	ENST00000491126		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000367593	ENST00000375458		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000367593	ENST00000342193		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000367593	ENST00000409184		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000367593	ENST00000392717		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000367593	ENST00000194871		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
intron-intron	ENST00000367593	ENST00000491126		ChiTaRS3.1			BF986060	ADAT2	chr6	143749047	+	COBLL1	chr2	165671320	-
5CDS-intron	ENST00000288135	ENST00000273390		ChiTaRS3.1			DN993363	KIT	chr4	55564731	+	MAATS1	chr3	119467986	+
5CDS-intron	ENST00000288135	ENST00000463700		ChiTaRS3.1			DN993363	KIT	chr4	55564731	+	MAATS1	chr3	119467986	+
5CDS-intron	ENST00000288135	ENST00000472117		ChiTaRS3.1			DN993363	KIT	chr4	55564731	+	MAATS1	chr3	119467986	+
intron-intron	ENST00000572173	ENST00000382172		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000572173	ENST00000469167		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000572992	ENST00000382172		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000572992	ENST00000469167		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000381820	ENST00000382172		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000381820	ENST00000469167		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000312499	ENST00000382172		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000312499	ENST00000469167		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000576027	ENST00000382172		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000576027	ENST00000469167		ChiTaRS3.1			DB341880	RMI2	chr16	11370061	+	MIPEP	chr13	24375503	+
intron-intron	ENST00000380821	ENST00000545939		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000286791		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000399934		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000341618		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000399935		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000399947		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000339024		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-5UTR	ENST00000380821	ENST00000399928		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-5UTR	ENST00000380821	ENST00000399926		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000399925		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380821	ENST00000496779		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000545939		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000286791		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000399934		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000341618		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000399935		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000399947		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000339024		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-5UTR	ENST00000461041	ENST00000399928		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-5UTR	ENST00000461041	ENST00000399926		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000399925		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000461041	ENST00000496779		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000545939		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000286791		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000399934		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000341618		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000399935		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000399947		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000339024		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-5UTR	ENST00000380799	ENST00000399928		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-5UTR	ENST00000380799	ENST00000399926		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000399925		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
intron-intron	ENST00000380799	ENST00000496779		ChiTaRS3.1			CB267900	SNAPC3	chr9	15464542	-	MAP3K7CL	chr21	30502961	-
In-frame	ENST00000316448	ENST00000316448		ChiTaRS3.1			D83840	CALR	chr19	13050261	-	CALR	chr19	13050325	+
intron-intron	ENST00000389327	ENST00000455089		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389327	ENST00000342916		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389327	ENST00000344576		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389327	ENST00000420316		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-3UTR	ENST00000389327	ENST00000275493		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389327	ENST00000442591		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389327	ENST00000463948		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389327	ENST00000454757		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000455089		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000342916		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000344576		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000420316		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-3UTR	ENST00000389328	ENST00000275493		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000442591		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000463948		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000389328	ENST00000454757		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000455089		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000342916		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000344576		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000420316		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-3UTR	ENST00000438773	ENST00000275493		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000442591		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000463948		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000438773	ENST00000454757		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000455089		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000342916		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000344576		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000420316		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-3UTR	ENST00000522504	ENST00000275493		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000442591		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000463948		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000522504	ENST00000454757		ChiTaRS3.1			AW842560	TRAPPC9	chr8	141321383	-	EGFR	chr7	55278850	+
intron-intron	ENST00000297431	ENST00000375835		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000297431	ENST00000375830		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000297431	ENST00000375831		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000545943	ENST00000375835		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000545943	ENST00000375830		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000545943	ENST00000375831		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000447452	ENST00000375835		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000447452	ENST00000375830		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000447452	ENST00000375831		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000485726	ENST00000375835		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000485726	ENST00000375830		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
intron-intron	ENST00000485726	ENST00000375831		ChiTaRS3.1			AW904020	ORC5	chr7	103801559	+	SHC3	chr9	91650513	-
Frame-shit	ENST00000295598	ENST00000295598		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000295598	ENST00000537345		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000295598	ENST00000369496		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
5CDS-intron	ENST00000295598	ENST00000491156		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000537345	ENST00000295598		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000537345	ENST00000537345		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000537345	ENST00000369496		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
5CDS-intron	ENST00000537345	ENST00000491156		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000369496	ENST00000295598		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000369496	ENST00000537345		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
Frame-shit	ENST00000369496	ENST00000369496		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
5CDS-intron	ENST00000369496	ENST00000491156		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
intron-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
intron-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
intron-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
intron-intron	ENST00000491156	ENST00000491156		ChiTaRS3.1			BQ312200	ATP1A1	chr1	116939285	-	ATP1A1	chr1	116935493	+
intron-5UTR	ENST00000264279	ENST00000222553		ChiTaRS3.1			DA677790	NOP58	chr2	203142907	+	NAMPT	chr7	105925426	-
intron-intron	ENST00000264279	ENST00000354289		ChiTaRS3.1			DA677790	NOP58	chr2	203142907	+	NAMPT	chr7	105925426	-
intron-intron	ENST00000264279	ENST00000484527		ChiTaRS3.1			DA677790	NOP58	chr2	203142907	+	NAMPT	chr7	105925426	-
intron-5UTR	ENST00000467734	ENST00000222553		ChiTaRS3.1			DA677790	NOP58	chr2	203142907	+	NAMPT	chr7	105925426	-
intron-intron	ENST00000467734	ENST00000354289		ChiTaRS3.1			DA677790	NOP58	chr2	203142907	+	NAMPT	chr7	105925426	-
intron-intron	ENST00000467734	ENST00000484527		ChiTaRS3.1			DA677790	NOP58	chr2	203142907	+	NAMPT	chr7	105925426	-
intron-intron	ENST00000546128	ENST00000546128		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000546128	ENST00000371923		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000546128	ENST00000271153		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000546128	ENST00000371919		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000546128	ENST00000452782		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-intron	ENST00000371923	ENST00000546128		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-3UTR	ENST00000371923	ENST00000371923		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-3UTR	ENST00000371923	ENST00000271153		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-intron	ENST00000371923	ENST00000371919		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-intron	ENST00000371923	ENST00000452782		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-intron	ENST00000271153	ENST00000546128		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-3UTR	ENST00000271153	ENST00000371923		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-3UTR	ENST00000271153	ENST00000271153		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-intron	ENST00000271153	ENST00000371919		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
3UTR-intron	ENST00000271153	ENST00000452782		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000371919	ENST00000546128		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000371919	ENST00000371923		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000371919	ENST00000271153		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000371919	ENST00000371919		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000371919	ENST00000452782		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000452782	ENST00000546128		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000452782	ENST00000371923		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000452782	ENST00000271153		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000452782	ENST00000371919		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-intron	ENST00000452782	ENST00000452782		ChiTaRS3.1			BM968720	CYP4B1	chr1	47284853	-	CYP4B1	chr1	47284751	+
intron-3UTR	ENST00000476233	ENST00000466801		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
intron-3UTR	ENST00000476233	ENST00000409321		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
intron-3UTR	ENST00000476233	ENST00000409115		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
intron-3UTR	ENST00000476233	ENST00000341369		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
intron-3UTR	ENST00000476233	ENST00000409683		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
intron-3UTR	ENST00000476233	ENST00000410064		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000354667	ENST00000466801		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000354667	ENST00000409321		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000354667	ENST00000409115		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000354667	ENST00000341369		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000354667	ENST00000409683		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000354667	ENST00000410064		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000356674	ENST00000466801		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000356674	ENST00000409321		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000356674	ENST00000409115		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000356674	ENST00000341369		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000356674	ENST00000409683		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
5CDS-3UTR	ENST00000356674	ENST00000410064		ChiTaRS3.1			BU153710	HNRNPA2B1	chr7	26236026	-	PTMA	chr2	232576616	+
intron-intron	ENST00000295874	ENST00000295874		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000295874	ENST00000474889		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000295874	ENST00000495879		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000474889	ENST00000295874		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000474889	ENST00000474889		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000474889	ENST00000495879		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000495879	ENST00000295874		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000495879	ENST00000474889		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000495879	ENST00000495879		ChiTaRS3.1			BF821950	PTPRG	chr3	62192282	+	PTPRG	chr3	62192029	-
intron-intron	ENST00000384994	ENST00000176643		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-intron	ENST00000384994	ENST00000581518		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-intron	ENST00000384994	ENST00000395575		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-intron	ENST00000384994	ENST00000339618		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-intron	ENST00000384994	ENST00000579855		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-intron	ENST00000384994	ENST00000571163		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-intron	ENST00000384994	ENST00000574597		ChiTaRS3.1			BF854270	NEAT1	chr11	65194684	+	ALDH3A2	chr17	19566989	+
intron-3CDS	ENST00000357214	ENST00000357214		ChiTaRS3.1			BE408250	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000357214	ENST00000468598		ChiTaRS3.1			BE408250	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-3CDS	ENST00000468598	ENST00000357214		ChiTaRS3.1			BE408250	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000468598	ENST00000468598		ChiTaRS3.1			BE408250	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000252542	ENST00000252542		ChiTaRS3.1			BI063780	SAFB2	chr19	5593388	-	SAFB2	chr19	5593267	+
intron-intron	ENST00000252542	ENST00000591310		ChiTaRS3.1			BI063780	SAFB2	chr19	5593388	-	SAFB2	chr19	5593267	+
intron-intron	ENST00000591310	ENST00000252542		ChiTaRS3.1			BI063780	SAFB2	chr19	5593388	-	SAFB2	chr19	5593267	+
intron-intron	ENST00000591310	ENST00000591310		ChiTaRS3.1			BI063780	SAFB2	chr19	5593388	-	SAFB2	chr19	5593267	+
3UTR-3CDS	ENST00000299084	ENST00000174618		ChiTaRS3.1			AI797510	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-5UTR	ENST00000299084	ENST00000575374		ChiTaRS3.1			AI797510	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-3UTR	ENST00000299084	ENST00000575394		ChiTaRS3.1			AI797510	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3CDS	ENST00000561205	ENST00000174618		ChiTaRS3.1			AI797510	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-5UTR	ENST00000561205	ENST00000575374		ChiTaRS3.1			AI797510	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3UTR	ENST00000561205	ENST00000575394		ChiTaRS3.1			AI797510	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3UTR	ENST00000481781	ENST00000361565		ChiTaRS3.1			AW409890	INS-IGF2	chr11	2153903	+	IPO9	chr1	201845770	-
intron-intron	ENST00000481781	ENST00000464348		ChiTaRS3.1			AW409890	INS-IGF2	chr11	2153903	+	IPO9	chr1	201845770	-
intron-3UTR	ENST00000397270	ENST00000361565		ChiTaRS3.1			AW409890	INS-IGF2	chr11	2153903	+	IPO9	chr1	201845770	-
intron-intron	ENST00000397270	ENST00000464348		ChiTaRS3.1			AW409890	INS-IGF2	chr11	2153903	+	IPO9	chr1	201845770	-
intron-3CDS	ENST00000536708	ENST00000534548		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000536708	ENST00000526787		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000536708	ENST00000526422		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-3CDS	ENST00000338399	ENST00000534548		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000338399	ENST00000526787		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000338399	ENST00000526422		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-3CDS	ENST00000578663	ENST00000534548		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000578663	ENST00000526787		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000578663	ENST00000526422		ChiTaRS3.1			AW819720	CDK5RAP3	chr17	46053081	-	NCAPD3	chr11	134037956	-
intron-intron	ENST00000217043	ENST00000400324		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000400330		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000400319		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000400320		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000377908		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000267215		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000465066		ChiTaRS3.1			BF335440	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-3CDS	ENST00000239944	ENST00000393651		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000239944	ENST00000357311		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000239944	ENST00000489828		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-intron	ENST00000239944	ENST00000493638		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000479209	ENST00000393651		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000479209	ENST00000357311		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000479209	ENST00000489828		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-intron	ENST00000479209	ENST00000493638		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000487153	ENST00000393651		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000487153	ENST00000357311		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000487153	ENST00000489828		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-intron	ENST00000487153	ENST00000493638		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000491660	ENST00000393651		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000491660	ENST00000357311		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000491660	ENST00000489828		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-intron	ENST00000491660	ENST00000493638		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000490945	ENST00000393651		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000490945	ENST00000357311		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3CDS	ENST00000490945	ENST00000489828		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-intron	ENST00000490945	ENST00000493638		ChiTaRS3.1			BQ183150	SERP1	chr3	150263938	+	SRPK2	chr7	104773523	+
intron-3UTR	ENST00000394936	ENST00000394936		ChiTaRS3.1			BE930210	PSAP	chr10	73588678	+	PSAP	chr10	73576985	+
intron-3UTR	ENST00000394936	ENST00000394934		ChiTaRS3.1			BE930210	PSAP	chr10	73588678	+	PSAP	chr10	73576985	+
intron-3UTR	ENST00000394934	ENST00000394936		ChiTaRS3.1			BE930210	PSAP	chr10	73588678	+	PSAP	chr10	73576985	+
intron-3UTR	ENST00000394934	ENST00000394934		ChiTaRS3.1			BE930210	PSAP	chr10	73588678	+	PSAP	chr10	73576985	+
intron-3CDS	ENST00000393004	ENST00000393004		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000393004	ENST00000237172		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000393004	ENST00000498523		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000393004	ENST00000370020		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000237172	ENST00000393004		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000237172	ENST00000237172		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000237172	ENST00000498523		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000237172	ENST00000370020		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000498523	ENST00000393004		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000498523	ENST00000237172		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000498523	ENST00000498523		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000498523	ENST00000370020		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000370020	ENST00000393004		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-3CDS	ENST00000370020	ENST00000237172		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000370020	ENST00000498523		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000370020	ENST00000370020		ChiTaRS3.1			AA092810	FILIP1	chr6	76023041	-	FILIP1	chr6	76072549	-
intron-intron	ENST00000535741	ENST00000535741		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000510413		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000503716		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000357115		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000507224		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000535741		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000510413		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000503716		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000357115		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000507224		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000535741		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000510413		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000503716		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000357115		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000507224		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000535741		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000510413		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000503716		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000357115		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000507224		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000535741		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000510413		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000503716		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000357115		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000507224		ChiTaRS3.1			AW991980	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-3UTR	ENST00000441250	ENST00000261880		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-5UTR	ENST00000441250	ENST00000538028		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-3UTR	ENST00000441250	ENST00000561452		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-intron	ENST00000441250	ENST00000542650		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-3UTR	ENST00000279206	ENST00000261880		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-5UTR	ENST00000279206	ENST00000538028		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-3UTR	ENST00000279206	ENST00000561452		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-intron	ENST00000279206	ENST00000542650		ChiTaRS3.1			BF438850	NUDT22	chr11	63998289	-	AAGAB	chr15	67494694	-
intron-3CDS	ENST00000304129	ENST00000304129		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000304129	ENST00000369271		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000304129	ENST00000545353		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-5UTR	ENST00000304129	ENST00000491814		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000369271	ENST00000304129		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000369271	ENST00000369271		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000369271	ENST00000545353		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-5UTR	ENST00000369271	ENST00000491814		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000545353	ENST00000304129		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000545353	ENST00000369271		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000545353	ENST00000545353		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-5UTR	ENST00000545353	ENST00000491814		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000491814	ENST00000304129		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000491814	ENST00000369271		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000491814	ENST00000545353		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-5UTR	ENST00000491814	ENST00000491814		ChiTaRS3.1			Z42720	AFAP1L2	chr10	116060235	-	AFAP1L2	chr10	116061151	-
intron-3CDS	ENST00000382679	ENST00000367990		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382679	ENST00000468465		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382679	ENST00000463812		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382679	ENST00000470459		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382679	ENST00000464492		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-intron	ENST00000382679	ENST00000491350		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-3CDS	ENST00000382692	ENST00000367990		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382692	ENST00000468465		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382692	ENST00000463812		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382692	ENST00000470459		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-5UTR	ENST00000382692	ENST00000464492		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-intron	ENST00000382692	ENST00000491350		ChiTaRS3.1			AI064980	DEFA1	chr8	6856718	+	APOA2	chr1	161192764	-
intron-intron	ENST00000355528	ENST00000355528		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000355528	ENST00000397466		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000355528	ENST00000539345		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000355528	ENST00000576691		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000355528		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000397466		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000539345		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000576691		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000355528		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000397466		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000539345		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000576691		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000355528		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000397466		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000539345		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000576691		ChiTaRS3.1			AI205530	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-3UTR	ENST00000409206	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409206	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409206	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409594	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409594	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409594	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000289528	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000289528	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000289528	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409412	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409412	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409412	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409097	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409097	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409097	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-3UTR	ENST00000409336	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-3UTR	ENST00000409336	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-3UTR	ENST00000409336	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409217	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409217	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409217	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000468301	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000468301	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000468301	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409319	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409319	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409319	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000444522	ENST00000409206		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000444522	ENST00000409594		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000444522	ENST00000289528		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409412		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409097		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409336		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409217		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000468301		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409319		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000444522		ChiTaRS3.1			AW968850	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000221419	ENST00000221419		ChiTaRS3.1			AI800860	HNRNPL	chr19	39332850	+	HNRNPL	chr19	39331798	+
intron-intron	ENST00000221419	ENST00000600873		ChiTaRS3.1			AI800860	HNRNPL	chr19	39332850	+	HNRNPL	chr19	39331798	+
intron-intron	ENST00000600873	ENST00000221419		ChiTaRS3.1			AI800860	HNRNPL	chr19	39332850	+	HNRNPL	chr19	39331798	+
intron-intron	ENST00000600873	ENST00000600873		ChiTaRS3.1			AI800860	HNRNPL	chr19	39332850	+	HNRNPL	chr19	39331798	+
intron-intron	ENST00000256257	ENST00000275884		ChiTaRS3.1			AA226620	RNF122	chr8	33418306	+	DENND2A	chr7	140240815	+
intron-intron	ENST00000256257	ENST00000537639		ChiTaRS3.1			AA226620	RNF122	chr8	33418306	+	DENND2A	chr7	140240815	+
intron-intron	ENST00000256257	ENST00000496613		ChiTaRS3.1			AA226620	RNF122	chr8	33418306	+	DENND2A	chr7	140240815	+
intron-intron	ENST00000256257	ENST00000492720		ChiTaRS3.1			AA226620	RNF122	chr8	33418306	+	DENND2A	chr7	140240815	+
intron-3UTR	ENST00000516892	ENST00000337288		ChiTaRS3.1			BF115630	MEG3	chr14	101315903	-	STARD7	chr2	96851587	+
intron-intron	ENST00000516892	ENST00000462501		ChiTaRS3.1			BF115630	MEG3	chr14	101315903	-	STARD7	chr2	96851587	+
intron-intron	ENST00000561924	ENST00000396353		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000561924	ENST00000396355		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000561924	ENST00000396354		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000561924	ENST00000342673		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000561924	ENST00000571896		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000290858	ENST00000396353		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000290858	ENST00000396355		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000290858	ENST00000396354		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000290858	ENST00000342673		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000290858	ENST00000571896		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000412916	ENST00000396353		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000412916	ENST00000396355		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000412916	ENST00000396354		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000412916	ENST00000342673		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000412916	ENST00000571896		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000568858	ENST00000396353		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000568858	ENST00000396355		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000568858	ENST00000396354		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000568858	ENST00000342673		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-intron	ENST00000568858	ENST00000571896		ChiTaRS3.1			AF390859	CBFB	chr16	67120259	+	NDE1	chr16	15815070	-
intron-3UTR	ENST00000361217	ENST00000361217		ChiTaRS3.1			W23080	DENND4B	chr1	153902256	+	DENND4B	chr1	153902741	-
intron-intron	ENST00000361217	ENST00000474386		ChiTaRS3.1			W23080	DENND4B	chr1	153902256	+	DENND4B	chr1	153902741	-
intron-3UTR	ENST00000474386	ENST00000361217		ChiTaRS3.1			W23080	DENND4B	chr1	153902256	+	DENND4B	chr1	153902741	-
intron-intron	ENST00000474386	ENST00000474386		ChiTaRS3.1			W23080	DENND4B	chr1	153902256	+	DENND4B	chr1	153902741	-
intron-intron	ENST00000287437	ENST00000170447		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000287437	ENST00000411987		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000287437	ENST00000448482		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000522563	ENST00000170447		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000522563	ENST00000411987		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000522563	ENST00000448482		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000517315	ENST00000170447		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000517315	ENST00000411987		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000517315	ENST00000448482		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000521460	ENST00000170447		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000521460	ENST00000411987		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
intron-intron	ENST00000521460	ENST00000448482		ChiTaRS3.1			BE082940	NSMCE2	chr8	126200211	-	MKRN2	chr3	12605932	+
5CDS-5UTR	ENST00000372592	ENST00000372600		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000372592	ENST00000372599		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000372592	ENST00000259324		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-intron	ENST00000372592	ENST00000492784		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000308941	ENST00000372600		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000308941	ENST00000372599		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000308941	ENST00000259324		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-intron	ENST00000308941	ENST00000492784		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000353176	ENST00000372600		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000353176	ENST00000372599		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000353176	ENST00000259324		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-intron	ENST00000353176	ENST00000492784		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000421063	ENST00000372600		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000421063	ENST00000372599		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-5UTR	ENST00000421063	ENST00000259324		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
5CDS-intron	ENST00000421063	ENST00000492784		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
intron-5UTR	ENST00000487504	ENST00000372600		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
intron-5UTR	ENST00000487504	ENST00000372599		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
intron-5UTR	ENST00000487504	ENST00000259324		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
intron-intron	ENST00000487504	ENST00000492784		ChiTaRS3.1			AI879160	PHYHD1	chr9	131689477	+	LRRC8A	chr9	131669434	+
intron-intron	ENST00000342183	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000342183	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401710	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000404971	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406316	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405472	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000401669	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000406859	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000402717	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000331040	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000394413		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000530902		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000508545		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000394414		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000394411		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000453001		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000356826		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000394410		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000336640		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000504198		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000405581	ENST00000394409		ChiTaRS3.1			T07730	NRXN1	chr2	50268315	-	PPP2R2B	chr5	146220828	-
intron-intron	ENST00000377351	ENST00000268989		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000377351	ENST00000426855		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000377351	ENST00000574563		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000335972	ENST00000268989		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000335972	ENST00000426855		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000335972	ENST00000574563		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000490869	ENST00000268989		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000490869	ENST00000426855		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000490869	ENST00000574563		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000377269	ENST00000268989		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000377269	ENST00000426855		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-intron	ENST00000377269	ENST00000574563		ChiTaRS3.1			BC040590	UBA1	chrX	47052064	+	SGSM2	chr17	2280675	+
intron-3CDS	ENST00000265689	ENST00000316149		ChiTaRS3.1			AW997590	CHKA	chr11	67832736	-	NDUFAF4	chr6	97339050	+
intron-5UTR	ENST00000265689	ENST00000489477		ChiTaRS3.1			AW997590	CHKA	chr11	67832736	-	NDUFAF4	chr6	97339050	+
intron-3CDS	ENST00000533728	ENST00000316149		ChiTaRS3.1			AW997590	CHKA	chr11	67832736	-	NDUFAF4	chr6	97339050	+
intron-5UTR	ENST00000533728	ENST00000489477		ChiTaRS3.1			AW997590	CHKA	chr11	67832736	-	NDUFAF4	chr6	97339050	+
intron-3CDS	ENST00000356135	ENST00000316149		ChiTaRS3.1			AW997590	CHKA	chr11	67832736	-	NDUFAF4	chr6	97339050	+
intron-5UTR	ENST00000356135	ENST00000489477		ChiTaRS3.1			AW997590	CHKA	chr11	67832736	-	NDUFAF4	chr6	97339050	+
intron-3UTR	ENST00000368020	ENST00000368020		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368020	ENST00000368021		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368020	ENST00000435396		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-intron	ENST00000368020	ENST00000368019		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368021	ENST00000368020		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368021	ENST00000368021		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368021	ENST00000435396		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-intron	ENST00000368021	ENST00000368019		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000435396	ENST00000368020		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000435396	ENST00000368021		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000435396	ENST00000435396		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-intron	ENST00000435396	ENST00000368019		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368019	ENST00000368020		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368019	ENST00000368021		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-3UTR	ENST00000368019	ENST00000435396		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-intron	ENST00000368019	ENST00000368019		ChiTaRS3.1			BI001640	USF1	chr1	161009339	+	USF1	chr1	161009164	-
intron-intron	ENST00000552828	ENST00000552828		ChiTaRS3.1			BF802120	CKAP4	chr12	106633435	+	CKAP4	chr12	106633474	-
intron-intron	ENST00000552828	ENST00000378026		ChiTaRS3.1			BF802120	CKAP4	chr12	106633435	+	CKAP4	chr12	106633474	-
intron-intron	ENST00000378026	ENST00000552828		ChiTaRS3.1			BF802120	CKAP4	chr12	106633435	+	CKAP4	chr12	106633474	-
intron-intron	ENST00000378026	ENST00000378026		ChiTaRS3.1			BF802120	CKAP4	chr12	106633435	+	CKAP4	chr12	106633474	-
3UTR-3CDS	ENST00000354828	ENST00000295897		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000354828	ENST00000415165		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000354828	ENST00000503124		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000354828	ENST00000509063		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000354828	ENST00000401494		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3UTR	ENST00000354828	ENST00000505649		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000400075	ENST00000295897		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000400075	ENST00000415165		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000400075	ENST00000503124		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000400075	ENST00000509063		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3CDS	ENST00000400075	ENST00000401494		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
3UTR-3UTR	ENST00000400075	ENST00000505649		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
intron-3CDS	ENST00000487266	ENST00000295897		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
intron-3CDS	ENST00000487266	ENST00000415165		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
intron-3CDS	ENST00000487266	ENST00000503124		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
intron-3CDS	ENST00000487266	ENST00000509063		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
intron-3CDS	ENST00000487266	ENST00000401494		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
intron-3UTR	ENST00000487266	ENST00000505649		ChiTaRS3.1			AF119890	GABPA	chr21	27141926	-	ALB	chr4	74277769	+
In-frame	ENST00000372842	ENST00000316878		ChiTaRS3.1			BI016240	CERCAM	chr9	131186871	-	PPP1R9B	chr17	48221027	-
5CDS-5UTR	ENST00000372842	ENST00000501501		ChiTaRS3.1			BI016240	CERCAM	chr9	131186871	-	PPP1R9B	chr17	48221027	-
In-frame	ENST00000372838	ENST00000316878		ChiTaRS3.1			BI016240	CERCAM	chr9	131186871	-	PPP1R9B	chr17	48221027	-
5CDS-5UTR	ENST00000372838	ENST00000501501		ChiTaRS3.1			BI016240	CERCAM	chr9	131186871	-	PPP1R9B	chr17	48221027	-
intron-3CDS	ENST00000493788	ENST00000316878		ChiTaRS3.1			BI016240	CERCAM	chr9	131186871	-	PPP1R9B	chr17	48221027	-
intron-5UTR	ENST00000493788	ENST00000501501		ChiTaRS3.1			BI016240	CERCAM	chr9	131186871	-	PPP1R9B	chr17	48221027	-
intron-3UTR	ENST00000380934	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000380934	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380934	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380959	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000380959	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380959	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380953	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000380953	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380953	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000397575	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000397575	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000397575	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000397581	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000397581	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000397581	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000397579	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000397579	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000397579	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000543693	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000543693	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000543693	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380924	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000380924	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380924	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380921	ENST00000334121		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-intron	ENST00000380921	ENST00000380918		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
intron-3UTR	ENST00000380921	ENST00000284041		ChiTaRS3.1			BE172450	NFIB	chr9	14296126	+	SREK1	chr5	65475853	+
3UTR-3CDS	ENST00000401419	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000401419	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000397129	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000397129	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000404802	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000404802	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000341116	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000341116	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000429360	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000429360	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000404393	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000404393	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000397225	ENST00000376701		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000397225	ENST00000483750		ChiTaRS3.1			CB164510	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3UTR	ENST00000379887	ENST00000202028		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-3UTR	ENST00000379887	ENST00000373950		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-3UTR	ENST00000379887	ENST00000441639		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-3UTR	ENST00000379887	ENST00000373946		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-3UTR	ENST00000379887	ENST00000338074		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-intron	ENST00000379887	ENST00000373941		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-intron	ENST00000379887	ENST00000479336		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-3UTR	ENST00000562891	ENST00000202028		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-3UTR	ENST00000562891	ENST00000373950		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-3UTR	ENST00000562891	ENST00000441639		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-3UTR	ENST00000562891	ENST00000373946		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-3UTR	ENST00000562891	ENST00000338074		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-intron	ENST00000562891	ENST00000373941		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
intron-intron	ENST00000562891	ENST00000479336		ChiTaRS3.1			BE219900	ARIH1	chr15	72878710	-	EPB41L1	chr20	34818002	+
3UTR-intron	ENST00000521913	ENST00000374140		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000350696		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000317613		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000343817		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000394646		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000374136		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000462143		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000463806		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000342620		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000374134		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000521913	ENST00000462403		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000374140		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000350696		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000317613		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000343817		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000394646		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000374136		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000462143		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000463806		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000342620		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000374134		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
3UTR-intron	ENST00000311151	ENST00000462403		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000374140		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000350696		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000317613		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000343817		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000394646		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000374136		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000462143		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000463806		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000342620		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000374134		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000523027	ENST00000462403		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000374140		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000350696		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000317613		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000343817		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000394646		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000374136		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000462143		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000463806		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000342620		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000374134		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
intron-intron	ENST00000521983	ENST00000462403		ChiTaRS3.1			BF963110	DPYSL2	chr8	26514876	+	RGS3	chr9	116306039	-
5CDS-intron	ENST00000377869	ENST00000377869		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000377869	ENST00000220616		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000377869	ENST00000542445		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000377869	ENST00000519543		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000377869	ENST00000522523		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000220616	ENST00000377869		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000220616	ENST00000220616		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000220616	ENST00000542445		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000220616	ENST00000519543		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000220616	ENST00000522523		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000542445	ENST00000377869		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000542445	ENST00000220616		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000542445	ENST00000542445		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000542445	ENST00000519543		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000542445	ENST00000522523		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000519543	ENST00000377869		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000519543	ENST00000220616		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000519543	ENST00000542445		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000519543	ENST00000519543		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
5CDS-intron	ENST00000519543	ENST00000522523		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
intron-intron	ENST00000522523	ENST00000377869		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
intron-intron	ENST00000522523	ENST00000220616		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
intron-intron	ENST00000522523	ENST00000542445		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
intron-intron	ENST00000522523	ENST00000519543		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
intron-intron	ENST00000522523	ENST00000522523		ChiTaRS3.1			BG992510	TG	chr8	134108578	+	TG	chr8	134128960	-
intron-3CDS	ENST00000369252	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369252	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369252	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369252	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369252	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369252	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369252	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000369252	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000533213	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000533213	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000277895	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000277895	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369266	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000369266	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000392952	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000392952	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000369253	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000369253	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000298834		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000426438		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000314845		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000533727		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000534300		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000458649		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-3CDS	ENST00000477638	ENST00000528950		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000477638	ENST00000529963		ChiTaRS3.1			BG984350	ABLIM1	chr10	116445474	+	AMBRA1	chr11	46430139	-
intron-intron	ENST00000369093	ENST00000590671		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000369093	ENST00000246117		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000369093	ENST00000591062		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000463089	ENST00000590671		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000463089	ENST00000246117		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000463089	ENST00000591062		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000369092	ENST00000590671		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000369092	ENST00000246117		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000369092	ENST00000591062		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000436547	ENST00000590671		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000436547	ENST00000246117		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-intron	ENST00000436547	ENST00000591062		ChiTaRS3.1			CA489220	TIAL1	chr10	121356021	-	NCLN	chr19	3207188	+
intron-3CDS	ENST00000264229	ENST00000264229		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000264229	ENST00000541073		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000264229	ENST00000504228		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-intron	ENST00000264229	ENST00000505410		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000541073	ENST00000264229		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000541073	ENST00000541073		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000541073	ENST00000504228		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-intron	ENST00000541073	ENST00000505410		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000504228	ENST00000264229		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000504228	ENST00000541073		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000504228	ENST00000504228		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-intron	ENST00000504228	ENST00000505410		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000505410	ENST00000264229		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000505410	ENST00000541073		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-3CDS	ENST00000505410	ENST00000504228		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
intron-intron	ENST00000505410	ENST00000505410		ChiTaRS3.1			BE892820	KIAA1211	chr4	57193809	-	KIAA1211	chr4	57193869	+
3UTR-5UTR	ENST00000344204	ENST00000395211		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
3UTR-5UTR	ENST00000344204	ENST00000259365		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
3UTR-intron	ENST00000344204	ENST00000375175		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-5UTR	ENST00000537187	ENST00000395211		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-5UTR	ENST00000537187	ENST00000259365		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-intron	ENST00000537187	ENST00000375175		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-5UTR	ENST00000509967	ENST00000395211		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-5UTR	ENST00000509967	ENST00000259365		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-intron	ENST00000509967	ENST00000375175		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-5UTR	ENST00000515710	ENST00000395211		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-5UTR	ENST00000515710	ENST00000259365		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
intron-intron	ENST00000515710	ENST00000375175		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
3UTR-5UTR	ENST00000344135	ENST00000395211		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
3UTR-5UTR	ENST00000344135	ENST00000259365		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
3UTR-intron	ENST00000344135	ENST00000375175		ChiTaRS3.1			CA843090	TRIO	chr5	14509519	+	TMOD1	chr9	100286446	+
Frame-shit	ENST00000372009	ENST00000372009		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
Frame-shit	ENST00000372009	ENST00000361297		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
5CDS-intron	ENST00000372009	ENST00000477968		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
Frame-shit	ENST00000361297	ENST00000372009		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
Frame-shit	ENST00000361297	ENST00000361297		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
5CDS-intron	ENST00000361297	ENST00000477968		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
intron-3CDS	ENST00000477968	ENST00000372009		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
intron-3CDS	ENST00000477968	ENST00000361297		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
intron-intron	ENST00000477968	ENST00000477968		ChiTaRS3.1			AL040960	MAST2	chr1	46489557	-	MAST2	chr1	46489589	+
intron-3CDS	ENST00000332955	ENST00000336967		ChiTaRS3.1			BI045770	IZUMO1	chr19	49245404	+	MYADM	chr19	54377114	-
intron-3CDS	ENST00000332955	ENST00000391771		ChiTaRS3.1			BI045770	IZUMO1	chr19	49245404	+	MYADM	chr19	54377114	-
intron-3CDS	ENST00000332955	ENST00000391770		ChiTaRS3.1			BI045770	IZUMO1	chr19	49245404	+	MYADM	chr19	54377114	-
intron-3CDS	ENST00000332955	ENST00000391769		ChiTaRS3.1			BI045770	IZUMO1	chr19	49245404	+	MYADM	chr19	54377114	-
intron-3CDS	ENST00000332955	ENST00000391768		ChiTaRS3.1			BI045770	IZUMO1	chr19	49245404	+	MYADM	chr19	54377114	-
intron-intron	ENST00000342669	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000342669	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000342669	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000585392	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000585392	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000585392	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000587367	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000587367	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000587367	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000588599	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000588599	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000588599	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000391932	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000391932	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000391932	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000588301	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000588301	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000588301	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000590212	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000590212	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000590212	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000587579	ENST00000436319		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000587579	ENST00000370571		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-intron	ENST00000587579	ENST00000485434		ChiTaRS3.1			BI868400	SNRPD2	chr19	46190793	-	COL24A1	chr1	86520590	-
intron-3UTR	ENST00000316399	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000316399	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000316399	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000316399	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000396356	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000396356	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000396356	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000396356	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000352083	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000352083	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000352083	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000352083	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528252	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528252	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528252	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000528252	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000527619	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000527619	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000527619	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000527619	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528429	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528429	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528429	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000528429	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000533658	ENST00000602624		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000533658	ENST00000375048		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000533658	ENST00000415136		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000533658	ENST00000477229		ChiTaRS3.1			AW411410	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
Frame-shit	ENST00000490882	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000490882	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000490882	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000429972	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000429972	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000295956	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000295956	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000358537	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000358537	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000357272	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000357272	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000348383	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000348383	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000493452	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000493452	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000419752	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
5CDS-intron	ENST00000419752	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000490882		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000429972		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000295956		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000358537		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000357272		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000348383		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000493452		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-3CDS	ENST00000484981	ENST00000419752		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
intron-intron	ENST00000484981	ENST00000484981		ChiTaRS3.1			AI905910	FLNB	chr3	58095849	-	FLNB	chr3	58107015	+
Frame-shit	ENST00000572681	ENST00000572681		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000572681	ENST00000575839		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000572681	ENST00000160740		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000572681	ENST00000575354		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
intron-3CDS	ENST00000575839	ENST00000572681		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
intron-intron	ENST00000575839	ENST00000575839		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
intron-intron	ENST00000575839	ENST00000160740		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
intron-intron	ENST00000575839	ENST00000575354		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
Frame-shit	ENST00000160740	ENST00000572681		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000160740	ENST00000575839		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000160740	ENST00000160740		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000160740	ENST00000575354		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
Frame-shit	ENST00000575354	ENST00000572681		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000575354	ENST00000575839		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000575354	ENST00000160740		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
5CDS-intron	ENST00000575354	ENST00000575354		ChiTaRS3.1			BG820250	CIC	chr19	42798142	-	CIC	chr19	42798195	+
intron-intron	ENST00000334163	ENST00000334163		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000334163	ENST00000369294		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000334163	ENST00000471254		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000369294	ENST00000334163		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000369294	ENST00000369294		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000369294	ENST00000471254		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000471254	ENST00000334163		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000471254	ENST00000369294		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
intron-intron	ENST00000471254	ENST00000471254		ChiTaRS3.1			BF335120	POLR3C	chr1	145605925	-	POLR3C	chr1	145606173	+
3UTR-intron	ENST00000526926	ENST00000526926		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-intron	ENST00000526926	ENST00000458270		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-3UTR	ENST00000526926	ENST00000501748		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-intron	ENST00000458270	ENST00000526926		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-intron	ENST00000458270	ENST00000458270		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-3UTR	ENST00000458270	ENST00000501748		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-intron	ENST00000501748	ENST00000526926		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-intron	ENST00000501748	ENST00000458270		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
3UTR-3UTR	ENST00000501748	ENST00000501748		ChiTaRS3.1			BI001400	ZNF623	chr8	144734154	-	ZNF623	chr8	144734841	+
5CDS-intron	ENST00000472140	ENST00000311160		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
5CDS-intron	ENST00000472140	ENST00000355730		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
5CDS-intron	ENST00000472140	ENST00000398879		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
5CDS-intron	ENST00000472140	ENST00000442536		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
5CDS-intron	ENST00000472140	ENST00000458317		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
5CDS-intron	ENST00000472140	ENST00000474346		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000347397	ENST00000311160		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000347397	ENST00000355730		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000347397	ENST00000398879		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000347397	ENST00000442536		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000347397	ENST00000458317		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000347397	ENST00000474346		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000246020	ENST00000311160		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000246020	ENST00000355730		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000246020	ENST00000398879		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000246020	ENST00000442536		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000246020	ENST00000458317		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
intron-intron	ENST00000246020	ENST00000474346		ChiTaRS3.1			BI544560	CSTL1	chr20	23421451	+	TNS3	chr7	47364287	+
Frame-shit	ENST00000490882	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000490882	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000490882	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000429972	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000429972	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000429972	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000295956	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000295956	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000295956	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000358537	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000358537	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000358537	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000357272	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000357272	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000357272	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000348383	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000348383	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000348383	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000493452	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000493452	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000493452	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
Frame-shit	ENST00000419752	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
In-frame	ENST00000419752	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
5CDS-intron	ENST00000419752	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
intron-3CDS	ENST00000484981	ENST00000379442		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
intron-3CDS	ENST00000484981	ENST00000536621		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
intron-intron	ENST00000484981	ENST00000467414		ChiTaRS3.1			BG955820	FLNB	chr3	58116524	+	MUC12	chr7	100635135	-
intron-intron	ENST00000588705	ENST00000588705		ChiTaRS3.1			AF125100	IER3IP1	chr18	44681417	-	IER3IP1	chr18	44681475	+
intron-3UTR	ENST00000588705	ENST00000256433		ChiTaRS3.1			AF125100	IER3IP1	chr18	44681417	-	IER3IP1	chr18	44681475	+
5CDS-intron	ENST00000256433	ENST00000588705		ChiTaRS3.1			AF125100	IER3IP1	chr18	44681417	-	IER3IP1	chr18	44681475	+
5CDS-3UTR	ENST00000256433	ENST00000256433		ChiTaRS3.1			AF125100	IER3IP1	chr18	44681417	-	IER3IP1	chr18	44681475	+
intron-intron	ENST00000562778	ENST00000562778		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000562778	ENST00000268607		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000562778	ENST00000565788		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000562778	ENST00000534986		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000268607	ENST00000562778		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000268607	ENST00000268607		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000268607	ENST00000565788		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000268607	ENST00000534986		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000565788	ENST00000562778		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000565788	ENST00000268607		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000565788	ENST00000565788		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000565788	ENST00000534986		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000534986	ENST00000562778		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000534986	ENST00000268607		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000534986	ENST00000565788		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000534986	ENST00000534986		ChiTaRS3.1			BM720820	MAP1LC3B	chr16	87435173	+	MAP1LC3B	chr9	111894305	-
intron-intron	ENST00000452313	ENST00000327245		ChiTaRS3.1			BX648280	NPIPB7	chr16	29385597	+	ATP10B	chr5	160100558	-
intron-intron	ENST00000452313	ENST00000518411		ChiTaRS3.1			BX648280	NPIPB7	chr16	29385597	+	ATP10B	chr5	160100558	-
3UTR-intron	ENST00000228027	ENST00000548589		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000228027	ENST00000552699		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000228027	ENST00000267115		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000228027	ENST00000549385		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000228027	ENST00000423828		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000228027	ENST00000395006		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000228027	ENST00000547798		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-intron	ENST00000376262	ENST00000548589		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000376262	ENST00000552699		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000376262	ENST00000267115		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000376262	ENST00000549385		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000376262	ENST00000423828		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000376262	ENST00000395006		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
3UTR-3UTR	ENST00000376262	ENST00000547798		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-intron	ENST00000605608	ENST00000548589		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3UTR	ENST00000605608	ENST00000552699		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3UTR	ENST00000605608	ENST00000267115		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3UTR	ENST00000605608	ENST00000549385		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3UTR	ENST00000605608	ENST00000423828		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3UTR	ENST00000605608	ENST00000395006		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3UTR	ENST00000605608	ENST00000547798		ChiTaRS3.1			AA694250	DGAT2	chr11	75512291	-	TMBIM6	chr12	50158239	-
intron-3CDS	ENST00000255559	ENST00000333538		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3UTR	ENST00000255559	ENST00000498380		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3CDS	ENST00000542342	ENST00000333538		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3UTR	ENST00000542342	ENST00000498380		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3CDS	ENST00000579988	ENST00000333538		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3UTR	ENST00000579988	ENST00000498380		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3CDS	ENST00000579732	ENST00000333538		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-3UTR	ENST00000579732	ENST00000498380		ChiTaRS3.1			DA178830	SLC39A11	chr17	70949895	-	WBSCR17	chr7	71130394	+
intron-intron	ENST00000355831	ENST00000397128		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000355831	ENST00000354209		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000355831	ENST00000296800		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000343439	ENST00000397128		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000343439	ENST00000354209		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000343439	ENST00000296800		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000392782	ENST00000397128		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000392782	ENST00000354209		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000392782	ENST00000296800		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000392783	ENST00000397128		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000392783	ENST00000354209		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000392783	ENST00000296800		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000483316	ENST00000397128		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000483316	ENST00000354209		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000483316	ENST00000296800		ChiTaRS3.1			BQ347750	BAZ2B	chr2	160268974	-	PRKAA1	chr5	40776976	+
intron-intron	ENST00000409134	ENST00000536252		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000409134	ENST00000545103		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000409134	ENST00000540348		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000409134	ENST00000543944		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000409134	ENST00000297661		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000409134	ENST00000379186		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000409134	ENST00000359544		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000536252		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000545103		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000540348		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000543944		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000297661		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000379186		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000447989	ENST00000359544		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000536252		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000545103		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000540348		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000543944		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000297661		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000379186		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000553117	ENST00000359544		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000536252		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000545103		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000540348		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000543944		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000297661		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000379186		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000413020	ENST00000359544		ChiTaRS3.1			AA165440	ALDH7A1	chr5	125885898	+	UBAP1	chr9	34224641	-
intron-intron	ENST00000376065	ENST00000376065		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
intron-3UTR	ENST00000376065	ENST00000376052		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
intron-intron	ENST00000376065	ENST00000466153		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
3UTR-intron	ENST00000376052	ENST00000376065		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
3UTR-3UTR	ENST00000376052	ENST00000376052		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
3UTR-intron	ENST00000376052	ENST00000466153		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
intron-intron	ENST00000466153	ENST00000376065		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
intron-3UTR	ENST00000466153	ENST00000376052		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
intron-intron	ENST00000466153	ENST00000466153		ChiTaRS3.1			BF794140	TPP2	chr13	103331329	-	TPP2	chr13	103331368	+
5UTR-intron	ENST00000265062	ENST00000290200		ChiTaRS3.1			BE673930	RAB7A	chr3	128445038	-	IL10RB	chr21	34637311	+
intron-intron	ENST00000482525	ENST00000290200		ChiTaRS3.1			BE673930	RAB7A	chr3	128445038	-	IL10RB	chr21	34637311	+
intron-intron	ENST00000485280	ENST00000290200		ChiTaRS3.1			BE673930	RAB7A	chr3	128445038	-	IL10RB	chr21	34637311	+
intron-3UTR	ENST00000295628	ENST00000295628		ChiTaRS3.1			CN479300	LRRC58	chr3	120046693	+	LRRC58	chr3	120046953	-
5CDS-intron	ENST00000455147	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000455147	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000266563	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000266563	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
intron-intron	ENST00000545220	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
intron-intron	ENST00000545220	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000434354	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000434354	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000420616	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000420616	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000412720	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000412720	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000266564	ENST00000376322		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000266564	ENST00000376327		ChiTaRS3.1			BQ231050	PEX5	chr12	7362676	+	PLP2	chrX	49028235	+
5CDS-intron	ENST00000509603	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000509603	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000509603	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000509603	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000509603	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000509603	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000509603	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000319524	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000319524	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000319524	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000319524	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000319524	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000319524	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000319524	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000268763	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000268763	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000268763	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000268763	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000268763	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000268763	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000268763	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000398988	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000398988	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000398988	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000398988	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000398988	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000398988	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-3UTR	ENST00000398988	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000581975	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000581975	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000581975	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000581975	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000581975	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000581975	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000581975	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000582410	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000582410	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000582410	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000582410	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000582410	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000582410	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000582410	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000578981	ENST00000509603		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000578981	ENST00000319524		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000578981	ENST00000268763		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000578981	ENST00000398988		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-intron	ENST00000578981	ENST00000581975		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000578981	ENST00000582410		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
intron-3UTR	ENST00000578981	ENST00000578981		ChiTaRS3.1			AA999960	KSR1	chr17	25910022	-	KSR1	chr17	25950490	-
5CDS-intron	ENST00000545844	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000545844	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000545844	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000567887	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000567887	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000567887	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000372915	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000372915	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000372915	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000361689	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000361689	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000361689	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000539005	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000539005	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000539005	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000317713	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000317713	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000317713	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000564288	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000564288	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-intron	ENST00000564288	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000289893	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000289893	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000289893	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000536367	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000536367	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000536367	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000484793	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000484793	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000484793	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000602421	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000602421	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
intron-intron	ENST00000602421	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
3UTR-intron	ENST00000476350	ENST00000403050		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
3UTR-intron	ENST00000476350	ENST00000445996		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
3UTR-intron	ENST00000476350	ENST00000469407		ChiTaRS3.1			BE149930	MACF1	chr1	39768636	-	PHF14	chr7	11161766	+
5CDS-3UTR	ENST00000334976	ENST00000334976		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
5CDS-3UTR	ENST00000334976	ENST00000376918		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
5CDS-3UTR	ENST00000334976	ENST00000598585		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
3UTR-3UTR	ENST00000376918	ENST00000334976		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
3UTR-3UTR	ENST00000376918	ENST00000376918		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
3UTR-3UTR	ENST00000376918	ENST00000598585		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
5CDS-3UTR	ENST00000598585	ENST00000334976		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
5CDS-3UTR	ENST00000598585	ENST00000376918		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
5CDS-3UTR	ENST00000598585	ENST00000598585		ChiTaRS3.1			AI038830	EMC10	chr19	50985504	-	EMC10	chr19	50986239	-
intron-intron	ENST00000410059	ENST00000264710		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000410059	ENST00000462003		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000409163	ENST00000264710		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000409163	ENST00000462003		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000393147	ENST00000264710		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000393147	ENST00000462003		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000310323	ENST00000264710		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000310323	ENST00000462003		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000488208	ENST00000264710		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000488208	ENST00000462003		ChiTaRS3.1			CV425580	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000414242	ENST00000414242		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
intron-3UTR	ENST00000414242	ENST00000361479		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
intron-intron	ENST00000414242	ENST00000496525		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
3UTR-intron	ENST00000361479	ENST00000414242		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
3UTR-3UTR	ENST00000361479	ENST00000361479		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
3UTR-intron	ENST00000361479	ENST00000496525		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
intron-intron	ENST00000496525	ENST00000414242		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
intron-3UTR	ENST00000496525	ENST00000361479		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
intron-intron	ENST00000496525	ENST00000496525		ChiTaRS3.1			BU736580	MPHOSPH8	chr13	20246399	-	MPHOSPH8	chr13	20246987	-
In-frame	ENST00000261674	ENST00000261674		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
In-frame	ENST00000261674	ENST00000541286		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
5CDS-intron	ENST00000261674	ENST00000539506		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
In-frame	ENST00000541286	ENST00000261674		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
In-frame	ENST00000541286	ENST00000541286		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
5CDS-intron	ENST00000541286	ENST00000539506		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
intron-3CDS	ENST00000539506	ENST00000261674		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
intron-3CDS	ENST00000539506	ENST00000541286		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
intron-intron	ENST00000539506	ENST00000539506		ChiTaRS3.1			BF874620	SFSWAP	chr12	132241098	-	SFSWAP	chr12	132250719	+
intron-5UTR	ENST00000448662	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000431808	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000284776	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000437304	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000319471	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000449407	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000355634	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000393528	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000418609	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000498125	ENST00000348956		ChiTaRS3.1			BQ057560	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-intron	ENST00000448150	ENST00000448150		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000448150	ENST00000367649		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000448150	ENST00000465723		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000448150	ENST00000462775		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000367649	ENST00000448150		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000367649	ENST00000367649		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000367649	ENST00000465723		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000367649	ENST00000462775		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000465723	ENST00000448150		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000465723	ENST00000367649		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000465723	ENST00000465723		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000465723	ENST00000462775		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000462775	ENST00000448150		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000462775	ENST00000367649		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000462775	ENST00000465723		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000462775	ENST00000462775		ChiTaRS3.1			DN917460	RASAL2	chr1	178135931	-	RASAL2	chr1	178138120	-
intron-intron	ENST00000368554	ENST00000337147		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000368554	ENST00000367075		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000368554	ENST00000392177		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000368554	ENST00000476189		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000361518	ENST00000337147		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000361518	ENST00000367075		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000361518	ENST00000392177		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000361518	ENST00000476189		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000359035	ENST00000337147		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000359035	ENST00000367075		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000359035	ENST00000392177		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000359035	ENST00000476189		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000463816	ENST00000337147		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000463816	ENST00000367075		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000463816	ENST00000392177		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-intron	ENST00000463816	ENST00000476189		ChiTaRS3.1			M85430	ZNF511	chr10	135138989	+	EZR	chr6	159239276	-
intron-3CDS	ENST00000561623	ENST00000368653		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-3CDS	ENST00000561623	ENST00000368654		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-intron	ENST00000561623	ENST00000484853		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-3CDS	ENST00000356183	ENST00000368653		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-3CDS	ENST00000356183	ENST00000368654		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-intron	ENST00000356183	ENST00000484853		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-3CDS	ENST00000567806	ENST00000368653		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-3CDS	ENST00000567806	ENST00000368654		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
intron-intron	ENST00000567806	ENST00000484853		ChiTaRS3.1			BE840900	GTF3C1	chr16	27503707	+	MKI67	chr10	129903454	+
5CDS-5UTR	ENST00000586622	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000586622	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000586622	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000586622	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000586622	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000588460	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000588460	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000588460	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000588460	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000588460	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000591864	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000591864	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000591864	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-intron	ENST00000591864	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-intron	ENST00000591864	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000590393	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000590393	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000590393	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-intron	ENST00000590393	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-intron	ENST00000590393	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000593181	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000593181	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000593181	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000593181	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000593181	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000355954	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000355954	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000355954	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000355954	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000355954	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000336509	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000336509	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000336509	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000336509	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000336509	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000590514	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000590514	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-5UTR	ENST00000590514	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000590514	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
5CDS-intron	ENST00000590514	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000590070	ENST00000425241		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000590070	ENST00000323373		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-5UTR	ENST00000590070	ENST00000393102		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-intron	ENST00000590070	ENST00000406272		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-intron	ENST00000590070	ENST00000478572		ChiTaRS3.1			U10990	MFSD11	chr17	74738105	+	NR2C2	chr3	15045391	+
intron-3UTR	ENST00000586448	ENST00000354546		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000586448	ENST00000523714		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000586448	ENST00000356496		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000586448	ENST00000377751		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000586448	ENST00000521512		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-intron	ENST00000586448	ENST00000519610		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000255226	ENST00000354546		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000255226	ENST00000523714		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000255226	ENST00000356496		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000255226	ENST00000377751		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000255226	ENST00000521512		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-intron	ENST00000255226	ENST00000519610		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000589658	ENST00000354546		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000589658	ENST00000523714		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000589658	ENST00000356496		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000589658	ENST00000377751		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-3UTR	ENST00000589658	ENST00000521512		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
intron-intron	ENST00000589658	ENST00000519610		ChiTaRS3.1			CF552880	SLC14A2	chr18	43163245	+	ANXA6	chr5	150480787	-
3UTR-3UTR	ENST00000392627	ENST00000392627		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000392627	ENST00000342648		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000392627	ENST00000481232		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000392627	ENST00000392629		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000392627	ENST00000582873		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000392627		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000342648		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000481232		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000342648	ENST00000392629		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000342648	ENST00000582873		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000392627		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000342648		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000481232		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000481232	ENST00000392629		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000481232	ENST00000582873		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000392627		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000342648		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000481232		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000392629	ENST00000392629		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000392629	ENST00000582873		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000392627		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000342648		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000481232		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000582873	ENST00000392629		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000582873	ENST00000582873		ChiTaRS3.1			D82510	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000586725	ENST00000586725		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000586725	ENST00000269195		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000586725	ENST00000591081		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000586725	ENST00000537549		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000269195	ENST00000586725		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000269195	ENST00000269195		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000269195	ENST00000591081		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000269195	ENST00000537549		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000591081	ENST00000586725		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000591081	ENST00000269195		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000591081	ENST00000591081		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-intron	ENST00000591081	ENST00000537549		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000537549	ENST00000586725		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000537549	ENST00000269195		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000537549	ENST00000591081		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
5CDS-intron	ENST00000537549	ENST00000537549		ChiTaRS3.1			W52720	GALNT1	chr18	33289677	-	GALNT1	chr18	33283545	+
intron-3UTR	ENST00000332272	ENST00000262428		ChiTaRS3.1			AF219990	CHST6	chr16	75512350	-	COTL1	chr16	84599653	-
intron-5UTR	ENST00000332272	ENST00000567278		ChiTaRS3.1			AF219990	CHST6	chr16	75512350	-	COTL1	chr16	84599653	-
intron-3UTR	ENST00000332272	ENST00000564057		ChiTaRS3.1			AF219990	CHST6	chr16	75512350	-	COTL1	chr16	84599653	-
intron-3UTR	ENST00000390664	ENST00000262428		ChiTaRS3.1			AF219990	CHST6	chr16	75512350	-	COTL1	chr16	84599653	-
intron-5UTR	ENST00000390664	ENST00000567278		ChiTaRS3.1			AF219990	CHST6	chr16	75512350	-	COTL1	chr16	84599653	-
intron-3UTR	ENST00000390664	ENST00000564057		ChiTaRS3.1			AF219990	CHST6	chr16	75512350	-	COTL1	chr16	84599653	-
intron-3UTR	ENST00000401084	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000401084	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000401084	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000264203	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000264203	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000264203	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000375142	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000375142	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000375142	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000433834	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000433834	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000433834	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000264202	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000264202	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000264202	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000482808	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000482808	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000482808	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000375144	ENST00000328089		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000375144	ENST00000357898		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-intron	ENST00000375144	ENST00000377399		ChiTaRS3.1			BG979990	CAPZB	chr1	19666594	+	SPSB1	chr1	9429310	-
intron-3UTR	ENST00000314100	ENST00000404666		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000314100	ENST00000295156		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000314100	ENST00000406397		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000314100	ENST00000483921		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000481247	ENST00000404666		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000481247	ENST00000295156		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000481247	ENST00000406397		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000481247	ENST00000483921		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000419706	ENST00000404666		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000419706	ENST00000295156		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000419706	ENST00000406397		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000419706	ENST00000483921		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000408958	ENST00000404666		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000408958	ENST00000295156		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000408958	ENST00000406397		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000408958	ENST00000483921		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000403056	ENST00000404666		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000403056	ENST00000295156		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-3UTR	ENST00000403056	ENST00000406397		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-intron	ENST00000403056	ENST00000483921		ChiTaRS3.1			AK090930	BTBD9	chr6	38141711	-	VSNL1	chr2	17836700	+
intron-5UTR	ENST00000405837	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000405837	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000433053	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000433053	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000278893	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000278893	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000360796	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000360796	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000403550	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000403550	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000407022	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000407022	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000421906	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000421906	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000537604	ENST00000295830		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000537604	ENST00000463836		ChiTaRS3.1			BG823360	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
5CDS-intron	ENST00000305877	ENST00000425967		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397091		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000447712		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000341462		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000532791		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397113		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000356207		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000335922		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000326324		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397103		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397108		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000496629		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000425967		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397091		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000447712		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000341462		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000532791		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397113		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000356207		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000335922		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000326324		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397103		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397108		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000496629		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000425967		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397091		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000447712		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000341462		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000532791		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397113		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000356207		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000335922		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000326324		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397103		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397108		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000496629		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000425967		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397091		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000447712		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000341462		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000532791		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397113		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000356207		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000335922		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000326324		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397103		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397108		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000496629		ChiTaRS3.1			AJ298916	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000320389	ENST00000297579		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000320389	ENST00000521716		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000320389	ENST00000521971		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000320389	ENST00000521999		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000320389	ENST00000519682		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000498729	ENST00000297579		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000498729	ENST00000521716		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000498729	ENST00000521971		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000498729	ENST00000521999		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
intron-intron	ENST00000498729	ENST00000519682		ChiTaRS3.1			X90840	KIF1A	chr2	241655117	-	DCAF13	chr8	104444394	+
3UTR-3UTR	ENST00000496136	ENST00000496136		ChiTaRS3.1			BI254560	ECHDC3	chr10	11805882	-	ECHDC3	chr10	11805925	+
3UTR-3UTR	ENST00000496136	ENST00000379215		ChiTaRS3.1			BI254560	ECHDC3	chr10	11805882	-	ECHDC3	chr10	11805925	+
3UTR-3UTR	ENST00000379215	ENST00000496136		ChiTaRS3.1			BI254560	ECHDC3	chr10	11805882	-	ECHDC3	chr10	11805925	+
3UTR-3UTR	ENST00000379215	ENST00000379215		ChiTaRS3.1			BI254560	ECHDC3	chr10	11805882	-	ECHDC3	chr10	11805925	+
intron-intron	ENST00000433346	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000433346	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000449039	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000449039	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000007969	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000007969	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000323702	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000323702	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000443597	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000443597	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000436789	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000436789	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000429740	ENST00000476041		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-3UTR	ENST00000429740	ENST00000315732		ChiTaRS3.1			BF925700	LRRC23	chr12	7018878	-	LSM10	chr1	36859250	-
intron-intron	ENST00000368073	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000368073		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000326837		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000368074		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000608310		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000556710		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000610139		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000475733		ChiTaRS3.1			BI963970	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BI060530	GABRE	chrX	151122871	+	GABRE	chrX	151122670	-
intron-3CDS	ENST00000359906	ENST00000011619		ChiTaRS3.1			BF062580	SERHL	chr22	42904765	+	RANBP9	chr6	13644838	+
intron-intron	ENST00000359906	ENST00000469916		ChiTaRS3.1			BF062580	SERHL	chr22	42904765	+	RANBP9	chr6	13644838	+
intron-intron	ENST00000359906	ENST00000539980		ChiTaRS3.1			BF062580	SERHL	chr22	42904765	+	RANBP9	chr6	13644838	+
intron-intron	ENST00000370910	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370910	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000361420	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000361420	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370903	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370903	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370904	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370904	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000467244	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000467244	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370900	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370900	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370901	ENST00000329321		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000370901	ENST00000470071		ChiTaRS3.1			AV727120	IGSF1	chrX	130409070	-	GPR39	chr2	133402628	-
intron-intron	ENST00000549920	ENST00000585892		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549920	ENST00000314646		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549920	ENST00000359692		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549920	ENST00000389253		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549920	ENST00000355667		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549920	ENST00000408974		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549920	ENST00000591819		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000585892		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000314646		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000359692		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000389253		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000355667		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000408974		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000550645	ENST00000591819		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000585892		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000314646		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000359692		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000389253		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000355667		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000408974		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000552588	ENST00000591819		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000585892		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000314646		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000359692		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000389253		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000355667		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000408974		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-intron	ENST00000549273	ENST00000591819		ChiTaRS3.1			AW276460	RPL18	chr19	49119404	+	DNM2	chr19	10943795	+
intron-3UTR	ENST00000337273	ENST00000263805		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000337273	ENST00000565380		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000337273	ENST00000565611		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000337273	ENST00000565660		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000454282	ENST00000263805		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000454282	ENST00000565380		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000454282	ENST00000565611		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000454282	ENST00000565660		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000447967	ENST00000263805		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000447967	ENST00000565380		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000447967	ENST00000565611		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000447967	ENST00000565660		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000523768	ENST00000263805		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000523768	ENST00000565380		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000523768	ENST00000565611		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000523768	ENST00000565660		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000513944	ENST00000263805		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000513944	ENST00000565380		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000513944	ENST00000565611		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000513944	ENST00000565660		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000506351	ENST00000263805		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000506351	ENST00000565380		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000506351	ENST00000565611		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-intron	ENST00000506351	ENST00000565660		ChiTaRS3.1			BQ338570	TNPO1	chr5	72185092	-	ZNF106	chr15	42707674	+
intron-3UTR	ENST00000409792	ENST00000583215		ChiTaRS3.1			AA704520	SETD2	chr3	47139652	+	PIPOX	chr17	27383271	-
intron-3UTR	ENST00000409792	ENST00000323372		ChiTaRS3.1			AA704520	SETD2	chr3	47139652	+	PIPOX	chr17	27383271	-
intron-3UTR	ENST00000492397	ENST00000583215		ChiTaRS3.1			AA704520	SETD2	chr3	47139652	+	PIPOX	chr17	27383271	-
intron-3UTR	ENST00000492397	ENST00000323372		ChiTaRS3.1			AA704520	SETD2	chr3	47139652	+	PIPOX	chr17	27383271	-
intron-3CDS	ENST00000380394	ENST00000368764		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000380394	ENST00000392667		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000498815	ENST00000368764		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000498815	ENST00000392667		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000380384	ENST00000368764		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000380384	ENST00000392667		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000315377	ENST00000368764		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000315377	ENST00000392667		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000380381	ENST00000368764		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
intron-3CDS	ENST00000380381	ENST00000392667		ChiTaRS3.1			BF843060	RPS6	chr9	19378762	+	IVL	chr1	152884030	+
5CDS-5UTR	ENST00000439590	ENST00000216281		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000439590	ENST00000334701		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000439590	ENST00000441629		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000439590	ENST00000558600		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-5UTR	ENST00000311111	ENST00000216281		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000311111	ENST00000334701		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000311111	ENST00000441629		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000311111	ENST00000558600		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-5UTR	ENST00000584577	ENST00000216281		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000584577	ENST00000334701		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000584577	ENST00000441629		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000584577	ENST00000558600		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-5UTR	ENST00000534490	ENST00000216281		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000534490	ENST00000334701		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000534490	ENST00000441629		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000534490	ENST00000558600		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-5UTR	ENST00000533498	ENST00000216281		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000533498	ENST00000334701		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000533498	ENST00000441629		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
5CDS-intron	ENST00000533498	ENST00000558600		ChiTaRS3.1			DA794650	RPL38	chr17	72205450	+	HSP90AA1	chr14	102553443	-
3UTR-3CDS	ENST00000380171	ENST00000380171		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000380171	ENST00000606999		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000380171	ENST00000405489		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000606999	ENST00000380171		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000606999	ENST00000606999		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000606999	ENST00000405489		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000405489	ENST00000380171		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000405489	ENST00000606999		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000405489	ENST00000405489		ChiTaRS3.1			BU673980	ATRAID	chr2	27439913	-	ATRAID	chr2	27439783	+
3UTR-3CDS	ENST00000309042	ENST00000317147		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
3UTR-3CDS	ENST00000309042	ENST00000569240		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
3UTR-intron	ENST00000309042	ENST00000441024		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
3UTR-intron	ENST00000309042	ENST00000569732		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
3UTR-intron	ENST00000309042	ENST00000245138		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
intron-3CDS	ENST00000514063	ENST00000317147		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
intron-3CDS	ENST00000514063	ENST00000569240		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
intron-intron	ENST00000514063	ENST00000441024		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
intron-intron	ENST00000514063	ENST00000569732		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
intron-intron	ENST00000514063	ENST00000245138		ChiTaRS3.1			U22680	REST	chr4	57800857	+	CNOT1	chr16	58559926	+
5CDS-intron	ENST00000510514	ENST00000360284		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000545748		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000550082		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000547206		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000243050		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000394825		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000394824		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000510514	ENST00000548232		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000360284		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000545748		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000550082		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000547206		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000243050		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000394825		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000394824		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000555236	ENST00000548232		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000360284		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000545748		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000550082		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000547206		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000243050		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000394825		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000394824		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000434623	ENST00000548232		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000360284		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000545748		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000550082		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000547206		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000243050		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000394825		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000394824		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000374525	ENST00000548232		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000360284		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000545748		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000550082		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000547206		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000243050		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000394825		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000394824		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
5CDS-intron	ENST00000259318	ENST00000548232		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000360284		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000545748		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000550082		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000547206		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000243050		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000394825		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000394824		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000482335	ENST00000548232		ChiTaRS3.1			AW952990	AKAP2	chr9	112900113	+	NR4A1	chr12	52449648	+
intron-intron	ENST00000432054	ENST00000432054		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000432054	ENST00000393238		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000432054	ENST00000426664		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000432054	ENST00000329333		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000432054	ENST00000515024		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000393238	ENST00000432054		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000393238	ENST00000393238		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000393238	ENST00000426664		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000393238	ENST00000329333		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000393238	ENST00000515024		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000426664	ENST00000432054		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000426664	ENST00000393238		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000426664	ENST00000426664		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000426664	ENST00000329333		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000426664	ENST00000515024		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000329333	ENST00000432054		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000329333	ENST00000393238		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000329333	ENST00000426664		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000329333	ENST00000329333		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000329333	ENST00000515024		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000515024	ENST00000432054		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000515024	ENST00000393238		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000515024	ENST00000426664		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000515024	ENST00000329333		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
intron-intron	ENST00000515024	ENST00000515024		ChiTaRS3.1			CX786450	TMCC1	chr3	129443084	+	TMCC1	chr3	129443185	-
In-frame	ENST00000360214	ENST00000360214		ChiTaRS3.1			CK816160	ETS2	chr21	40190374	-	ETS2	chr21	40186305	+
In-frame	ENST00000360214	ENST00000360938		ChiTaRS3.1			CK816160	ETS2	chr21	40190374	-	ETS2	chr21	40186305	+
In-frame	ENST00000360938	ENST00000360214		ChiTaRS3.1			CK816160	ETS2	chr21	40190374	-	ETS2	chr21	40186305	+
In-frame	ENST00000360938	ENST00000360938		ChiTaRS3.1			CK816160	ETS2	chr21	40190374	-	ETS2	chr21	40186305	+
intron-3UTR	ENST00000272793	ENST00000263846		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000272793	ENST00000540677		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000272793	ENST00000539008		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000272793	ENST00000542836		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000272793	ENST00000542670		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000272793	ENST00000535826		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000272793	ENST00000540831		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-3UTR	ENST00000418381	ENST00000263846		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000418381	ENST00000540677		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000418381	ENST00000539008		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000418381	ENST00000542836		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000418381	ENST00000542670		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000418381	ENST00000535826		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000418381	ENST00000540831		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-3UTR	ENST00000392631	ENST00000263846		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000392631	ENST00000540677		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000392631	ENST00000539008		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000392631	ENST00000542836		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000392631	ENST00000542670		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000392631	ENST00000535826		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000392631	ENST00000540831		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-3UTR	ENST00000465630	ENST00000263846		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000465630	ENST00000540677		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000465630	ENST00000539008		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000465630	ENST00000542836		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000465630	ENST00000542670		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000465630	ENST00000535826		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-intron	ENST00000465630	ENST00000540831		ChiTaRS3.1			BP391060	UBR3	chr2	170749983	-	SYT7	chr11	61283367	-
intron-3CDS	ENST00000336898	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000336898	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000336898	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000336898	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000336898	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000336898	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000336898	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000336898	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000376282	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000376282	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000376282	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000376282	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000376282	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000376282	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000376282	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000376282	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000529095	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000529095	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529095	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529095	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529095	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529095	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529095	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000529095	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000526177	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000526177	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000526177	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000526177	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000526177	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000526177	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000526177	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000526177	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000533784	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000533784	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533784	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533784	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533784	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533784	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533784	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000533784	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000529721	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000529721	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529721	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529721	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529721	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529721	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000529721	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000529721	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000533805	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000533805	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533805	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533805	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533805	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533805	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000533805	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000533805	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000443276	ENST00000336898		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3CDS	ENST00000443276	ENST00000376282		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000443276	ENST00000529095		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000443276	ENST00000526177		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000443276	ENST00000533784		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000443276	ENST00000529721		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-intron	ENST00000443276	ENST00000533805		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000443276	ENST00000443276		ChiTaRS3.1			BF994880	GDPD5	chr11	75154286	+	GDPD5	chr11	75152286	-
intron-3UTR	ENST00000378609	ENST00000378609		ChiTaRS3.1			AA651630	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			AA651630	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-3UTR	ENST00000472614	ENST00000378609		ChiTaRS3.1			AA651630	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			AA651630	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-intron	ENST00000368679	ENST00000557515		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000338631		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000357481		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000605057		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000457657		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000262710		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000397341		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000555053		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000555352		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000557515		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000338631		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000357481		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000605057		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000457657		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000262710		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000397341		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000555053		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000555352		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000557515		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000338631		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000357481		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000605057		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000457657		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000262710		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000397341		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000555053		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000555352		ChiTaRS3.1			BI049580	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000332592	ENST00000535029		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000332592	ENST00000544016		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000332592	ENST00000361432		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000332592	ENST00000489988		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000478244	ENST00000535029		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000478244	ENST00000544016		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000478244	ENST00000361432		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000478244	ENST00000489988		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000375399	ENST00000535029		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000375399	ENST00000544016		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000375399	ENST00000361432		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000375399	ENST00000489988		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000460318	ENST00000535029		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000460318	ENST00000544016		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000460318	ENST00000361432		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
intron-intron	ENST00000460318	ENST00000489988		ChiTaRS3.1			BF736750	DCUN1D2	chr13	114134514	+	FAM45A	chr10	120867670	-
5CDS-intron	ENST00000534358	ENST00000262809		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000534358	ENST00000596124		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000389506	ENST00000262809		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000389506	ENST00000596124		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000354520	ENST00000262809		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000354520	ENST00000596124		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
3UTR-intron	ENST00000420751	ENST00000262809		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
3UTR-intron	ENST00000420751	ENST00000596124		ChiTaRS3.1			S77880	KMT2A	chr11	118355029	+	ELL	chr19	18586745	-
intron-intron	ENST00000553525	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553525	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000555571	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553530	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000556437	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000355512	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000406236	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000404301	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000407322	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000402788	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000343854	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000434263	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000554782	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000553525		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000555571		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000553530		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000556437		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000355512		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000406236		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000404301		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000407322		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000402788		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000343854		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000434263		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000554782		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000553690	ENST00000553690		ChiTaRS3.1			AF119880	RGS6	chr14	72472959	+	RGS6	chr14	72473568	-
intron-intron	ENST00000380006	ENST00000262367		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000380006	ENST00000382070		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000356721	ENST00000262367		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000356721	ENST00000382070		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000394725	ENST00000262367		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000394725	ENST00000382070		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000573005	ENST00000262367		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
intron-intron	ENST00000573005	ENST00000382070		ChiTaRS3.1			BG992160	SIAH1	chr16	48454762	-	CREBBP	chr16	3797210	+
5UTR-3CDS	ENST00000229239	ENST00000426595		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
5UTR-3CDS	ENST00000229239	ENST00000285298		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396856	ENST00000426595		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396856	ENST00000285298		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396861	ENST00000426595		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396861	ENST00000285298		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396859	ENST00000426595		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396859	ENST00000285298		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396858	ENST00000426595		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000396858	ENST00000285298		ChiTaRS3.1			BF816390	GAPDH	chr12	6643686	-	MRPS17	chr7	56022696	+
intron-3CDS	ENST00000380393	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000216877	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000358719	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000399903	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000425918	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000318266	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000356147	ENST00000286091		ChiTaRS3.1			BF800130	PTPRA	chr20	2945405	-	PDIA4	chr7	148701206	-
intron-3CDS	ENST00000376630	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000376630	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000376630	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000376630	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000376630	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415649	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415649	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415649	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415649	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000415649	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415289	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415289	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415289	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000415289	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000415289	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000444683	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000444683	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000444683	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000444683	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000444683	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000383597	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000383597	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000383597	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000383597	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000383597	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000425603	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000425603	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000425603	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-3CDS	ENST00000425603	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000425603	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
3UTR-3CDS	ENST00000427936	ENST00000425241		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
3UTR-3CDS	ENST00000427936	ENST00000323373		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
3UTR-3CDS	ENST00000427936	ENST00000393102		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
3UTR-3CDS	ENST00000427936	ENST00000406272		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
3UTR-intron	ENST00000427936	ENST00000478572		ChiTaRS3.1			BG399500	HLA-E	chr6	1793307	+	NR2C2	chr3	15045436	-
intron-intron	ENST00000601048	ENST00000310137		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601048	ENST00000393979		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601048	ENST00000409372		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601048	ENST00000443702		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601048	ENST00000409738		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601048	ENST00000461478		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000509570	ENST00000310137		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000509570	ENST00000393979		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000509570	ENST00000409372		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000509570	ENST00000443702		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000509570	ENST00000409738		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000509570	ENST00000461478		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000593892	ENST00000310137		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000593892	ENST00000393979		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000593892	ENST00000409372		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000593892	ENST00000443702		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000593892	ENST00000409738		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000593892	ENST00000461478		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601419	ENST00000310137		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601419	ENST00000393979		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601419	ENST00000409372		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601419	ENST00000443702		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601419	ENST00000409738		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000601419	ENST00000461478		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000595615	ENST00000310137		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000595615	ENST00000393979		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000595615	ENST00000409372		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000595615	ENST00000443702		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000595615	ENST00000409738		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-intron	ENST00000595615	ENST00000461478		ChiTaRS3.1			DA057090	SEPW1	chr19	48282304	+	RBM14	chr11	66395548	+
intron-3CDS	ENST00000356166	ENST00000356166		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000356166	ENST00000568722		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000356166	ENST00000482749		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000356166	ENST00000395073		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000356166	ENST00000287468		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000568722	ENST00000356166		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000568722	ENST00000568722		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000568722	ENST00000482749		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000568722	ENST00000395073		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000568722	ENST00000287468		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000482749	ENST00000356166		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000482749	ENST00000568722		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000482749	ENST00000482749		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000482749	ENST00000395073		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000482749	ENST00000287468		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000395073	ENST00000356166		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000395073	ENST00000568722		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000395073	ENST00000482749		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000395073	ENST00000395073		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000395073	ENST00000287468		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000287468	ENST00000356166		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000287468	ENST00000568722		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000287468	ENST00000482749		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000287468	ENST00000395073		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-intron	ENST00000287468	ENST00000287468		ChiTaRS3.1			AW993120	FBRS	chr16	30677724	-	FBRS	chr16	30678280	+
intron-3CDS	ENST00000242848	ENST00000242848		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000242848	ENST00000378921		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000242848	ENST00000282007		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-intron	ENST00000242848	ENST00000470308		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000378921	ENST00000242848		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000378921	ENST00000378921		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000378921	ENST00000282007		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-intron	ENST00000378921	ENST00000470308		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000282007	ENST00000242848		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000282007	ENST00000378921		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000282007	ENST00000282007		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-intron	ENST00000282007	ENST00000470308		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000470308	ENST00000242848		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000470308	ENST00000378921		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-3CDS	ENST00000470308	ENST00000282007		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-intron	ENST00000470308	ENST00000470308		ChiTaRS3.1			CA411690	ZC3H13	chr13	46543985	+	ZC3H13	chr13	46542016	+
intron-intron	ENST00000384994	ENST00000359139		ChiTaRS3.1			BE929980	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000384994	ENST00000395741		ChiTaRS3.1			BE929980	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000384994	ENST00000395744		ChiTaRS3.1			BE929980	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000384994	ENST00000216061		ChiTaRS3.1			BE929980	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-3UTR	ENST00000264380	ENST00000504825		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000264380	ENST00000304915		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000392202	ENST00000504825		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000392202	ENST00000304915		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000308862	ENST00000504825		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000308862	ENST00000304915		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000407449	ENST00000504825		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000407449	ENST00000304915		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000474721	ENST00000504825		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
intron-3UTR	ENST00000474721	ENST00000304915		ChiTaRS3.1			BX640810	PIKFYVE	chr2	209186753	+	SMR3B	chr4	71255597	+
5CDS-intron	ENST00000326764	ENST00000544840		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
5CDS-intron	ENST00000326764	ENST00000434554		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
5CDS-intron	ENST00000326764	ENST00000225573		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
5CDS-intron	ENST00000326764	ENST00000534893		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
intron-intron	ENST00000376514	ENST00000544840		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
intron-intron	ENST00000376514	ENST00000434554		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
intron-intron	ENST00000376514	ENST00000225573		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
intron-intron	ENST00000376514	ENST00000534893		ChiTaRS3.1			BQ346020	LENG8	chr19	54969380	-	PNPO	chr17	46026388	-
In-frame	ENST00000317620	ENST00000317620		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317620	ENST00000403131		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317620	ENST00000317668		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317620	ENST00000542147		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
5CDS-intron	ENST00000317620	ENST00000463580		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000403131	ENST00000317620		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000403131	ENST00000403131		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000403131	ENST00000317668		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000403131	ENST00000542147		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
5CDS-intron	ENST00000403131	ENST00000463580		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317668	ENST00000317620		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317668	ENST00000403131		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317668	ENST00000317668		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000317668	ENST00000542147		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
5CDS-intron	ENST00000317668	ENST00000463580		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000542147	ENST00000317620		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000542147	ENST00000403131		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000542147	ENST00000317668		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
In-frame	ENST00000542147	ENST00000542147		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
5CDS-intron	ENST00000542147	ENST00000463580		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
intron-3CDS	ENST00000463580	ENST00000317620		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
intron-3CDS	ENST00000463580	ENST00000403131		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
intron-3CDS	ENST00000463580	ENST00000317668		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
intron-3CDS	ENST00000463580	ENST00000542147		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
intron-intron	ENST00000463580	ENST00000463580		ChiTaRS3.1			CV326900	PROM2	chr2	95945704	-	PROM2	chr2	95945666	+
intron-intron	ENST00000428257	ENST00000216146		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000428257	ENST00000465618		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000428257	ENST00000401609		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000280700	ENST00000216146		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000280700	ENST00000465618		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000280700	ENST00000401609		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000396649	ENST00000216146		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000396649	ENST00000465618		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000396649	ENST00000401609		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000417874	ENST00000216146		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000417874	ENST00000465618		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000417874	ENST00000401609		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000467224	ENST00000216146		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000467224	ENST00000465618		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000467224	ENST00000401609		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000422724	ENST00000216146		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000422724	ENST00000465618		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-intron	ENST00000422724	ENST00000401609		ChiTaRS3.1			AW999090	NGLY1	chr3	25773848	-	RPL3	chr22	39713328	-
intron-3CDS	ENST00000357668	ENST00000390237		ChiTaRS3.1			BE931450	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-3CDS	ENST00000518721	ENST00000390237		ChiTaRS3.1			BE931450	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-3CDS	ENST00000520625	ENST00000390237		ChiTaRS3.1			BE931450	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
Frame-shit	ENST00000488633	ENST00000488633		ChiTaRS3.1			BF313490	CIAO1	chr2	96934209	-	CIAO1	chr2	96934229	+
5CDS-intron	ENST00000488633	ENST00000469320		ChiTaRS3.1			BF313490	CIAO1	chr2	96934209	-	CIAO1	chr2	96934229	+
intron-3CDS	ENST00000469320	ENST00000488633		ChiTaRS3.1			BF313490	CIAO1	chr2	96934209	-	CIAO1	chr2	96934229	+
intron-intron	ENST00000469320	ENST00000469320		ChiTaRS3.1			BF313490	CIAO1	chr2	96934209	-	CIAO1	chr2	96934229	+
intron-3UTR	ENST00000325881	ENST00000325881		ChiTaRS3.1			CV407110	SNX22	chr15	64452321	+	SNX22	chr15	64448113	-
Frame-shit	ENST00000547302	ENST00000401084		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
Frame-shit	ENST00000547302	ENST00000264203		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
Frame-shit	ENST00000547302	ENST00000375142		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
Frame-shit	ENST00000547302	ENST00000433834		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
Frame-shit	ENST00000547302	ENST00000264202		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
5CDS-5UTR	ENST00000547302	ENST00000482808		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
5CDS-5UTR	ENST00000547302	ENST00000375144		ChiTaRS3.1			DA571250	RNASEK-C17orf49	chr17	6920267	+	CAPZB	chr1	19705068	-
intron-3CDS	ENST00000324366	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000324366	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000324366	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000324366	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000324366	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000324366	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000324366	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000397441	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000397441	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397441	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397441	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397441	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397441	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000397441	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000397440	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000397440	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397440	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397440	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397440	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000397440	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000397440	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000216350	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000216350	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000216350	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000216350	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000216350	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000216350	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000216350	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000538452	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000538452	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000538452	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000538452	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000538452	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000538452	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000538452	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000553897	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000553897	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553897	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553897	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553897	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553897	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000553897	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000553641	ENST00000324366		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000553641	ENST00000397441		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553641	ENST00000397440		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553641	ENST00000216350		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553641	ENST00000538452		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-intron	ENST00000553641	ENST00000553897		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-5UTR	ENST00000553641	ENST00000553641		ChiTaRS3.1			BE063150	PRMT5	chr14	23391687	+	PRMT5	chr14	23395442	-
intron-3CDS	ENST00000413052	ENST00000413052		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000413052	ENST00000369645		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000413052	ENST00000544796		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000413052	ENST00000369644		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000413052	ENST00000468624		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000413052	ENST00000357443		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000369645	ENST00000413052		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000369645	ENST00000369645		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000369645	ENST00000544796		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000369645	ENST00000369644		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000369645	ENST00000468624		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000369645	ENST00000357443		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000544796	ENST00000413052		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000544796	ENST00000369645		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000544796	ENST00000544796		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000544796	ENST00000369644		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000544796	ENST00000468624		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000544796	ENST00000357443		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000369644	ENST00000413052		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000369644	ENST00000369645		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000369644	ENST00000544796		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000369644	ENST00000369644		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000369644	ENST00000468624		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000369644	ENST00000357443		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000468624	ENST00000413052		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000468624	ENST00000369645		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000468624	ENST00000544796		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000468624	ENST00000369644		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000468624	ENST00000468624		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000468624	ENST00000357443		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000357443	ENST00000413052		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000357443	ENST00000369645		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000357443	ENST00000544796		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-intron	ENST00000357443	ENST00000369644		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000357443	ENST00000468624		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3UTR	ENST00000357443	ENST00000357443		ChiTaRS3.1			AI752780	MOV10	chr1	113232461	-	MOV10	chr1	113232666	+
intron-3CDS	ENST00000422223	ENST00000422223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000422223	ENST00000380881		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000422223	ENST00000380880		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000422223	ENST00000380894		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-intron	ENST00000422223	ENST00000486223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380881	ENST00000422223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380881	ENST00000380881		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380881	ENST00000380880		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380881	ENST00000380894		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-intron	ENST00000380881	ENST00000486223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380880	ENST00000422223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380880	ENST00000380881		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380880	ENST00000380880		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380880	ENST00000380894		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-intron	ENST00000380880	ENST00000486223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380894	ENST00000422223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380894	ENST00000380881		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380894	ENST00000380880		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000380894	ENST00000380894		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-intron	ENST00000380894	ENST00000486223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000486223	ENST00000422223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000486223	ENST00000380881		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000486223	ENST00000380880		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-3CDS	ENST00000486223	ENST00000380894		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-intron	ENST00000486223	ENST00000486223		ChiTaRS3.1			AL045520	FREM1	chr9	14746467	+	FREM1	chr9	14748555	-
intron-intron	ENST00000566228	ENST00000343023		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-5UTR	ENST00000566228	ENST00000354230		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000566228	ENST00000303887		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000323433	ENST00000343023		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-5UTR	ENST00000323433	ENST00000354230		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000323433	ENST00000303887		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000306030	ENST00000343023		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-5UTR	ENST00000306030	ENST00000354230		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000306030	ENST00000303887		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000568359	ENST00000343023		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-5UTR	ENST00000568359	ENST00000354230		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-intron	ENST00000568359	ENST00000303887		ChiTaRS3.1			D28480	SNX29	chr16	12428742	+	MCM7	chr7	99696894	-
intron-5UTR	ENST00000467442	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000467442	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000467442	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000467442	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000476809	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000476809	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000476809	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000476809	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000485419	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000485419	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000485419	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000485419	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000337808	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000337808	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000337808	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000337808	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000527095	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000527095	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000527095	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000527095	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000412423	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000412423	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000412423	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000412423	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000460298	ENST00000527350		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-5UTR	ENST00000460298	ENST00000278919		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000460298	ENST00000366139		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-intron	ENST00000460298	ENST00000524435		ChiTaRS3.1			BQ347180	IQCJ-SCHIP1	chr3	159246153	-	FEZ1	chr11	125322275	+
intron-3CDS	ENST00000374005	ENST00000376929		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374005	ENST00000506690		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374005	ENST00000389805		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374005	ENST00000402874		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374005	ENST00000510187		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374005	ENST00000360718		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-3CDS	ENST00000399173	ENST00000376929		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000399173	ENST00000506690		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000399173	ENST00000389805		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000399173	ENST00000402874		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000399173	ENST00000510187		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000399173	ENST00000360718		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-3CDS	ENST00000545953	ENST00000376929		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000545953	ENST00000506690		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000545953	ENST00000389805		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000545953	ENST00000402874		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000545953	ENST00000510187		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000545953	ENST00000360718		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-3CDS	ENST00000374004	ENST00000376929		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374004	ENST00000506690		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374004	ENST00000389805		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374004	ENST00000402874		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374004	ENST00000510187		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000374004	ENST00000360718		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-3CDS	ENST00000468038	ENST00000376929		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000468038	ENST00000506690		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000468038	ENST00000389805		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000468038	ENST00000402874		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000468038	ENST00000510187		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000468038	ENST00000360718		ChiTaRS3.1			BG314620	FGR	chr1	27942264	-	SQSTM1	chr5	179252166	-
intron-intron	ENST00000399583	ENST00000441779		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000399583	ENST00000221283		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000399583	ENST00000414284		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000399583	ENST00000602355		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000536091	ENST00000441779		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000536091	ENST00000221283		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000536091	ENST00000414284		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000536091	ENST00000602355		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000538469	ENST00000441779		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000538469	ENST00000221283		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000538469	ENST00000414284		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000538469	ENST00000602355		ChiTaRS3.1			BI028780	RADIL	chr7	4859316	-	STXBP2	chr19	7710736	-
intron-intron	ENST00000503771	ENST00000379261		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000416382		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000450189		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000542579		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000399850		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000417956		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000354440		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000427450		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000315874		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000608830		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000609692		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000354897		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000503771	ENST00000537122		ChiTaRS3.1			T07230	TMEM158	chr3	45266108	-	CELF2	chr10	11076249	-
intron-intron	ENST00000300093	ENST00000457008		ChiTaRS3.1			AW362670	PLK1	chr16	23701825	+	ERN2	chr16	23705535	-
intron-intron	ENST00000300093	ENST00000256797		ChiTaRS3.1			AW362670	PLK1	chr16	23701825	+	ERN2	chr16	23705535	-
intron-intron	ENST00000564202	ENST00000457008		ChiTaRS3.1			AW362670	PLK1	chr16	23701825	+	ERN2	chr16	23705535	-
intron-intron	ENST00000564202	ENST00000256797		ChiTaRS3.1			AW362670	PLK1	chr16	23701825	+	ERN2	chr16	23705535	-
5CDS-intron	ENST00000556440	ENST00000407597		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000556440	ENST00000424279		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000556440	ENST00000536365		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000556440	ENST00000380961		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000556440	ENST00000217964		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000556440	ENST00000497555		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000553412	ENST00000407597		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000553412	ENST00000424279		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000553412	ENST00000536365		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000553412	ENST00000380961		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000553412	ENST00000217964		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
5CDS-intron	ENST00000553412	ENST00000497555		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000581056	ENST00000407597		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000581056	ENST00000424279		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000581056	ENST00000536365		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000581056	ENST00000380961		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000581056	ENST00000217964		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000581056	ENST00000497555		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000577476	ENST00000407597		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000577476	ENST00000424279		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000577476	ENST00000536365		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000577476	ENST00000380961		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000577476	ENST00000217964		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000577476	ENST00000497555		ChiTaRS3.1			BE827740	CEP95	chr17	62533176	-	TBL1X	chrX	9509514	-
intron-intron	ENST00000507166	ENST00000225823		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000507166	ENST00000359872		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000507166	ENST00000448983		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000358575	ENST00000225823		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000358575	ENST00000359872		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000358575	ENST00000448983		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000337488	ENST00000225823		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000337488	ENST00000359872		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000337488	ENST00000448983		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000507922	ENST00000225823		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000507922	ENST00000359872		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000507922	ENST00000448983		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000306932	ENST00000225823		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000306932	ENST00000359872		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000306932	ENST00000448983		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000510668	ENST00000225823		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000510668	ENST00000359872		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-intron	ENST00000510668	ENST00000448983		ChiTaRS3.1			AA283865	FIP1L1	chr4	54316420	+	ASIC2	chr17	31940185	-
intron-3UTR	ENST00000585892	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
intron-3UTR	ENST00000314646	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
intron-3UTR	ENST00000359692	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
intron-3UTR	ENST00000389253	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
intron-3UTR	ENST00000355667	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
intron-3UTR	ENST00000408974	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
intron-3UTR	ENST00000591819	ENST00000534336		ChiTaRS3.1			BF854780	DNM2	chr19	10874448	-	MALAT1	chr11	65266567	-
3UTR-3UTR	ENST00000244020	ENST00000244020		ChiTaRS3.1			AI936000	SRSF6	chr20	42091411	+	SRSF6	chr20	42091139	-
5CDS-intron	ENST00000402696	ENST00000233336		ChiTaRS3.1			BE766500	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-intron	ENST00000402696	ENST00000460450		ChiTaRS3.1			BE766500	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-intron	ENST00000264998	ENST00000233336		ChiTaRS3.1			BE766500	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-intron	ENST00000264998	ENST00000460450		ChiTaRS3.1			BE766500	TF	chr3	133478137	-	TTL	chr2	113280709	+
intron-intron	ENST00000475382	ENST00000233336		ChiTaRS3.1			BE766500	TF	chr3	133478137	-	TTL	chr2	113280709	+
intron-intron	ENST00000475382	ENST00000460450		ChiTaRS3.1			BE766500	TF	chr3	133478137	-	TTL	chr2	113280709	+
intron-intron	ENST00000514385	ENST00000272793		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000514385	ENST00000418381		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000514385	ENST00000392631		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000514385	ENST00000465630		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000532119	ENST00000272793		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000532119	ENST00000418381		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000532119	ENST00000392631		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000532119	ENST00000465630		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000528014	ENST00000272793		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000528014	ENST00000418381		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000528014	ENST00000392631		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000528014	ENST00000465630		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000292079	ENST00000272793		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000292079	ENST00000418381		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000292079	ENST00000392631		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000292079	ENST00000465630		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000260287	ENST00000272793		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000260287	ENST00000418381		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000260287	ENST00000392631		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000260287	ENST00000465630		ChiTaRS3.1			X86400	FXYD2	chr11	117695434	+	UBR3	chr2	170894695	+
intron-intron	ENST00000260526	ENST00000321169		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000260526	ENST00000435217		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000260526	ENST00000451445		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000260526	ENST00000456194		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000260526	ENST00000457447		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000482481	ENST00000321169		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000482481	ENST00000435217		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000482481	ENST00000451445		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000482481	ENST00000456194		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000482481	ENST00000457447		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000370217	ENST00000321169		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000370217	ENST00000435217		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000370217	ENST00000451445		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000370217	ENST00000456194		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-intron	ENST00000370217	ENST00000457447		ChiTaRS3.1			AW837060	ARHGAP29	chr1	94649540	-	HACL1	chr3	15595012	-
intron-3UTR	ENST00000523629	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000396218	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000265814	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000360348	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000436581	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000520724	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000518844	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000522163	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000422361	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
intron-3UTR	ENST00000521553	ENST00000534336		ChiTaRS3.1			EY123355	RUNX1T1	chr8	93009006	+	MALAT1	chr11	65268052	-
5CDS-3UTR	ENST00000321153	ENST00000260061		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-3UTR	ENST00000321153	ENST00000407242		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-3UTR	ENST00000321153	ENST00000404995		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-5UTR	ENST00000321153	ENST00000464145		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
3UTR-3UTR	ENST00000532004	ENST00000260061		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
3UTR-3UTR	ENST00000532004	ENST00000407242		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
3UTR-3UTR	ENST00000532004	ENST00000404995		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
3UTR-5UTR	ENST00000532004	ENST00000464145		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-3UTR	ENST00000530797	ENST00000260061		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-3UTR	ENST00000530797	ENST00000407242		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-3UTR	ENST00000530797	ENST00000404995		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
5CDS-5UTR	ENST00000530797	ENST00000464145		ChiTaRS3.1			AW882330	RPLP2	chr11	811644	+	LRRC32	chr11	76369065	-
intron-intron	ENST00000217131	ENST00000535891		ChiTaRS3.1			BI025220	CTSZ	chr20	57572772	+	AOAH	chr7	36649511	+
intron-intron	ENST00000217131	ENST00000258749		ChiTaRS3.1			BI025220	CTSZ	chr20	57572772	+	AOAH	chr7	36649511	+
intron-intron	ENST00000217131	ENST00000431169		ChiTaRS3.1			BI025220	CTSZ	chr20	57572772	+	AOAH	chr7	36649511	+
intron-intron	ENST00000217131	ENST00000538464		ChiTaRS3.1			BI025220	CTSZ	chr20	57572772	+	AOAH	chr7	36649511	+
intron-intron	ENST00000217131	ENST00000491444		ChiTaRS3.1			BI025220	CTSZ	chr20	57572772	+	AOAH	chr7	36649511	+
intron-3CDS	ENST00000421419	ENST00000301740		ChiTaRS3.1			BI036200	ATG2A	chr11	64675230	-	SRRM2	chr16	2816555	-
intron-intron	ENST00000421419	ENST00000574593		ChiTaRS3.1			BI036200	ATG2A	chr11	64675230	-	SRRM2	chr16	2816555	-
intron-3CDS	ENST00000377264	ENST00000301740		ChiTaRS3.1			BI036200	ATG2A	chr11	64675230	-	SRRM2	chr16	2816555	-
intron-intron	ENST00000377264	ENST00000574593		ChiTaRS3.1			BI036200	ATG2A	chr11	64675230	-	SRRM2	chr16	2816555	-
intron-intron	ENST00000410024	ENST00000397601		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000410024	ENST00000343600		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000410024	ENST00000345429		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000410024	ENST00000376673		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000410024	ENST00000445661		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409295	ENST00000397601		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409295	ENST00000343600		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409295	ENST00000345429		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409295	ENST00000376673		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409295	ENST00000445661		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409091	ENST00000397601		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409091	ENST00000343600		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409091	ENST00000345429		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409091	ENST00000376673		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
intron-intron	ENST00000409091	ENST00000445661		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000350033	ENST00000397601		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000350033	ENST00000343600		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000350033	ENST00000345429		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000350033	ENST00000376673		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000350033	ENST00000445661		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000410017	ENST00000397601		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000410017	ENST00000343600		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000410017	ENST00000345429		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000410017	ENST00000376673		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000410017	ENST00000445661		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000373608	ENST00000397601		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000373608	ENST00000343600		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000373608	ENST00000345429		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000373608	ENST00000376673		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
3UTR-intron	ENST00000373608	ENST00000445661		ChiTaRS3.1			AW367900	COPS7B	chr2	232672882	-	MBNL2	chr13	97980904	-
5CDS-3UTR	ENST00000393078	ENST00000393078		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000393078	ENST00000485588		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000393080		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000467132		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393078	ENST00000482740		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000393078		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-intron	ENST00000485588	ENST00000485588		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000393080		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000467132		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-3UTR	ENST00000485588	ENST00000482740		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000393078		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000393080	ENST00000485588		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000393080		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000467132		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000393080	ENST00000482740		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000393078		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000467132	ENST00000485588		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000393080		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000467132		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000467132	ENST00000482740		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000393078		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-intron	ENST00000482740	ENST00000485588		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000393080		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000467132		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
5CDS-3UTR	ENST00000482740	ENST00000482740		ChiTaRS3.1			BE813450	SERPINA3	chr14	95090096	-	SERPINA3	chr14	95090209	+
intron-intron	ENST00000415895	ENST00000527986		ChiTaRS3.1			CV423970	YIPF7	chr4	44629286	-	WAC-AS1	chr10	28816827	+
intron-intron	ENST00000415895	ENST00000528337		ChiTaRS3.1			CV423970	YIPF7	chr4	44629286	-	WAC-AS1	chr10	28816827	+
intron-intron	ENST00000332990	ENST00000527986		ChiTaRS3.1			CV423970	YIPF7	chr4	44629286	-	WAC-AS1	chr10	28816827	+
intron-intron	ENST00000332990	ENST00000528337		ChiTaRS3.1			CV423970	YIPF7	chr4	44629286	-	WAC-AS1	chr10	28816827	+
intron-intron	ENST00000309060	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000309060	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000540170	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000540170	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000559234	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000559234	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000557816	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000557816	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000558993	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000558993	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000544979	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000544979	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000560361	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000560361	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000432768	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000432768	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000561291	ENST00000356805		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000561291	ENST00000333896		ChiTaRS3.1			BQ717700	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
In-frame	ENST00000522706	ENST00000522706		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
In-frame	ENST00000522706	ENST00000262109		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
5CDS-5UTR	ENST00000522706	ENST00000518277		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
In-frame	ENST00000262109	ENST00000522706		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
In-frame	ENST00000262109	ENST00000262109		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
5CDS-5UTR	ENST00000262109	ENST00000518277		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-3CDS	ENST00000518277	ENST00000522706		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-3CDS	ENST00000518277	ENST00000262109		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-5UTR	ENST00000518277	ENST00000518277		ChiTaRS3.1			BG564010	ERICH1	chr8	618598	-	ERICH1	chr8	624048	-
intron-intron	ENST00000283429	ENST00000334940		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000283429	ENST00000374417		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000283429	ENST00000340258		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000283429	ENST00000472561		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574733	ENST00000334940		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574733	ENST00000374417		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574733	ENST00000340258		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574733	ENST00000472561		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000404295	ENST00000334940		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000404295	ENST00000374417		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000404295	ENST00000340258		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000404295	ENST00000472561		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574425	ENST00000334940		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574425	ENST00000374417		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574425	ENST00000340258		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000574425	ENST00000472561		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000572391	ENST00000334940		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000572391	ENST00000374417		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000572391	ENST00000340258		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000572391	ENST00000472561		ChiTaRS3.1			CA417360	NMRAL1	chr16	4516284	+	RASSF4	chr10	45472161	-
intron-intron	ENST00000371191	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371191	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371191	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371191	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000366574		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000360064		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000542537		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000609119		ChiTaRS3.1			BX479190	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000259400	ENST00000301633		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000259400	ENST00000350051		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000259400	ENST00000374948		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000259400	ENST00000590449		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000259400	ENST00000592734		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000259400	ENST00000589892		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525640	ENST00000301633		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525640	ENST00000350051		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525640	ENST00000374948		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525640	ENST00000590449		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525640	ENST00000592734		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525640	ENST00000589892		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000534052	ENST00000301633		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000534052	ENST00000350051		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000534052	ENST00000374948		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000534052	ENST00000590449		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000534052	ENST00000592734		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000534052	ENST00000589892		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525847	ENST00000301633		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525847	ENST00000350051		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525847	ENST00000374948		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525847	ENST00000590449		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525847	ENST00000592734		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
intron-intron	ENST00000525847	ENST00000589892		ChiTaRS3.1			AA600810	STX17	chr9	102734191	-	BIRC5	chr17	76216922	-
3UTR-intron	ENST00000380050	ENST00000331351		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
3UTR-intron	ENST00000380050	ENST00000475436		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
3UTR-intron	ENST00000265741	ENST00000331351		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
3UTR-intron	ENST00000265741	ENST00000475436		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
3UTR-intron	ENST00000406263	ENST00000331351		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
3UTR-intron	ENST00000406263	ENST00000475436		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
intron-intron	ENST00000436577	ENST00000331351		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
intron-intron	ENST00000436577	ENST00000475436		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
intron-intron	ENST00000496279	ENST00000331351		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
intron-intron	ENST00000496279	ENST00000475436		ChiTaRS3.1			T05820	CDK14	chr7	90838851	-	HS3ST4	chr16	25847926	+
intron-intron	ENST00000344157	ENST00000344157		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000344157	ENST00000355665		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000344157	ENST00000579690		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000344157	ENST00000552105		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000344157	ENST00000550485		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000355665	ENST00000344157		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000355665	ENST00000355665		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000355665	ENST00000579690		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000355665	ENST00000552105		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000355665	ENST00000550485		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000579690	ENST00000344157		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000579690	ENST00000355665		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000579690	ENST00000579690		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000579690	ENST00000552105		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000579690	ENST00000550485		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000552105	ENST00000344157		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000552105	ENST00000355665		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000552105	ENST00000579690		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000552105	ENST00000552105		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000552105	ENST00000550485		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000550485	ENST00000344157		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000550485	ENST00000355665		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-intron	ENST00000550485	ENST00000579690		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000550485	ENST00000552105		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3UTR	ENST00000550485	ENST00000550485		ChiTaRS3.1			CA310690	YTHDC1	chr4	9276	+	YTHDC1	chr4	9323	-
intron-3CDS	ENST00000542575	ENST00000542575		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000542575	ENST00000434726		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000542575	ENST00000594991		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000542575	ENST00000412532		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000434726	ENST00000542575		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000434726	ENST00000434726		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000434726	ENST00000594991		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000434726	ENST00000412532		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000594991	ENST00000542575		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000594991	ENST00000434726		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000594991	ENST00000594991		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000594991	ENST00000412532		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000412532	ENST00000542575		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000412532	ENST00000434726		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000412532	ENST00000594991		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-3CDS	ENST00000412532	ENST00000412532		ChiTaRS3.1			W40520	SLC1A5	chr19	47282095	+	SLC1A5	chr19	47282001	-
intron-intron	ENST00000300030	ENST00000300030		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000300030	ENST00000558779		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000300030	ENST00000380290		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000300030	ENST00000557835		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000300030	ENST00000559950		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000558779	ENST00000300030		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000558779	ENST00000558779		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000558779	ENST00000380290		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000558779	ENST00000557835		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000558779	ENST00000559950		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000380290	ENST00000300030		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000380290	ENST00000558779		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000380290	ENST00000380290		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000380290	ENST00000557835		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000380290	ENST00000559950		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000557835	ENST00000300030		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000557835	ENST00000558779		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000557835	ENST00000380290		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000557835	ENST00000557835		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000557835	ENST00000559950		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000559950	ENST00000300030		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000559950	ENST00000558779		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000559950	ENST00000380290		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000559950	ENST00000557835		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-intron	ENST00000559950	ENST00000559950		ChiTaRS3.1			AA827860	FAM96A	chr15	64370564	+	FAM96A	chr15	64366108	+
intron-3CDS	ENST00000607628	ENST00000607628		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000607628	ENST00000480258		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000607628	ENST00000606822		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000607628	ENST00000294241		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-3CDS	ENST00000480258	ENST00000607628		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000480258	ENST00000480258		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000480258	ENST00000606822		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000480258	ENST00000294241		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-3CDS	ENST00000606822	ENST00000607628		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000606822	ENST00000480258		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000606822	ENST00000606822		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000606822	ENST00000294241		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-3CDS	ENST00000294241	ENST00000607628		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000294241	ENST00000480258		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000294241	ENST00000606822		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-5UTR	ENST00000294241	ENST00000294241		ChiTaRS3.1			BQ277160	DCP1A	chr3	53326464	-	DCP1A	chr3	53381473	-
intron-3UTR	ENST00000273038	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000273038	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000273038	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000430365	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000430365	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000430365	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000404339	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000404339	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000404339	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000480288	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000480288	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000480288	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000413604	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000413604	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000413604	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000451674	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000451674	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000451674	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000424529	ENST00000435296		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-3UTR	ENST00000424529	ENST00000257696		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
intron-intron	ENST00000424529	ENST00000481454		ChiTaRS3.1			BE080110	VGLL4	chr3	11723489	+	HILPDA	chr7	128097661	-
5UTR-5UTR	ENST00000531120	ENST00000355238		ChiTaRS3.1			BC019360	EIF3M	chr11	32605399	-	SYNCRIP	chr6	86352608	-
5UTR-5UTR	ENST00000531120	ENST00000369622		ChiTaRS3.1			BC019360	EIF3M	chr11	32605399	-	SYNCRIP	chr6	86352608	-
5UTR-5UTR	ENST00000524896	ENST00000355238		ChiTaRS3.1			BC019360	EIF3M	chr11	32605399	-	SYNCRIP	chr6	86352608	-
5UTR-5UTR	ENST00000524896	ENST00000369622		ChiTaRS3.1			BC019360	EIF3M	chr11	32605399	-	SYNCRIP	chr6	86352608	-
intron-5UTR	ENST00000532054	ENST00000355238		ChiTaRS3.1			BC019360	EIF3M	chr11	32605399	-	SYNCRIP	chr6	86352608	-
intron-5UTR	ENST00000532054	ENST00000369622		ChiTaRS3.1			BC019360	EIF3M	chr11	32605399	-	SYNCRIP	chr6	86352608	-
intron-3UTR	ENST00000319550	ENST00000309964		ChiTaRS3.1			AA857050	NT5DC1	chr6	116537298	-	CLOCK	chr4	56295444	+
intron-intron	ENST00000319550	ENST00000381322		ChiTaRS3.1			AA857050	NT5DC1	chr6	116537298	-	CLOCK	chr4	56295444	+
intron-intron	ENST00000319550	ENST00000513440		ChiTaRS3.1			AA857050	NT5DC1	chr6	116537298	-	CLOCK	chr4	56295444	+
intron-intron	ENST00000319550	ENST00000506923		ChiTaRS3.1			AA857050	NT5DC1	chr6	116537298	-	CLOCK	chr4	56295444	+
intron-3CDS	ENST00000396946	ENST00000315757		ChiTaRS3.1			AW339880	CARD11	chr7	2945832	+	ITGA11	chr15	68609658	+
intron-3CDS	ENST00000396946	ENST00000423218		ChiTaRS3.1			AW339880	CARD11	chr7	2945832	+	ITGA11	chr15	68609658	+
intron-intron	ENST00000396946	ENST00000562826		ChiTaRS3.1			AW339880	CARD11	chr7	2945832	+	ITGA11	chr15	68609658	+
intron-3CDS	ENST00000311669	ENST00000311669		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000311669	ENST00000456471		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000311669	ENST00000567733		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000456471	ENST00000311669		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000456471	ENST00000456471		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000456471	ENST00000567733		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000567733	ENST00000311669		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000567733	ENST00000456471		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000567733	ENST00000567733		ChiTaRS3.1			BQ669550	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3UTR	ENST00000309958	ENST00000396976		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-3UTR	ENST00000309958	ENST00000396972		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000309958	ENST00000568898		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000309958	ENST00000562072		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000309958	ENST00000563508		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-3UTR	ENST00000391805	ENST00000396976		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-3UTR	ENST00000391805	ENST00000396972		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000391805	ENST00000568898		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000391805	ENST00000562072		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000391805	ENST00000563508		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-3UTR	ENST00000358789	ENST00000396976		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-3UTR	ENST00000358789	ENST00000396972		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000358789	ENST00000568898		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000358789	ENST00000562072		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000358789	ENST00000563508		ChiTaRS3.1			AW999510	KLK10	chr19	51517897	-	ZSCAN29	chr15	43651374	+
intron-intron	ENST00000354725	ENST00000262435		ChiTaRS3.1			M78490	SND1	chr7	127635582	-	SMURF2	chr17	62559813	-
intron-intron	ENST00000354725	ENST00000578200		ChiTaRS3.1			M78490	SND1	chr7	127635582	-	SMURF2	chr17	62559813	-
intron-intron	ENST00000467238	ENST00000262435		ChiTaRS3.1			M78490	SND1	chr7	127635582	-	SMURF2	chr17	62559813	-
intron-intron	ENST00000467238	ENST00000578200		ChiTaRS3.1			M78490	SND1	chr7	127635582	-	SMURF2	chr17	62559813	-
3UTR-intron	ENST00000503431	ENST00000551673		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
3UTR-5UTR	ENST00000503431	ENST00000324868		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
3UTR-intron	ENST00000284440	ENST00000551673		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
3UTR-5UTR	ENST00000284440	ENST00000324868		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
intron-intron	ENST00000504818	ENST00000551673		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
intron-5UTR	ENST00000504818	ENST00000324868		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
3UTR-intron	ENST00000508768	ENST00000551673		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
3UTR-5UTR	ENST00000508768	ENST00000324868		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
intron-intron	ENST00000512788	ENST00000551673		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
intron-5UTR	ENST00000512788	ENST00000324868		ChiTaRS3.1			AW075450	UCHL1	chr4	41270232	-	YARS2	chr12	32908820	-
intron-3CDS	ENST00000518836	ENST00000331925		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000518836	ENST00000573283		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000518836	ENST00000575842		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000518836	ENST00000575087		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000313708	ENST00000331925		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000313708	ENST00000573283		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000313708	ENST00000575842		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000313708	ENST00000575087		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000380654	ENST00000331925		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000380654	ENST00000573283		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000380654	ENST00000575842		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000380654	ENST00000575087		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000517373	ENST00000331925		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000517373	ENST00000573283		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000517373	ENST00000575842		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-3CDS	ENST00000517373	ENST00000575087		ChiTaRS3.1			AU118850	EBF1	chr5	158302410	-	ACTG1	chr17	79478092	-
intron-intron	ENST00000233813	ENST00000434513		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000361221		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000452522		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000375415		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000375420		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000469726		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000375408		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000233813	ENST00000167825		ChiTaRS3.1			BF855370	IGFBP5	chr2	217538172	-	ARHGEF10L	chr1	18020516	+
intron-intron	ENST00000216181	ENST00000322723		ChiTaRS3.1			BF815870	MYH9	chr22	36691572	-	NCL	chr2	232325190	+
intron-intron	ENST00000475726	ENST00000322723		ChiTaRS3.1			BF815870	MYH9	chr22	36691572	-	NCL	chr2	232325190	+
intron-intron	ENST00000401701	ENST00000322723		ChiTaRS3.1			BF815870	MYH9	chr22	36691572	-	NCL	chr2	232325190	+
5CDS-intron	ENST00000324856	ENST00000324856		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000324856	ENST00000457599		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000324856	ENST00000374152		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000324856	ENST00000540690		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000457599	ENST00000324856		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000457599	ENST00000457599		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000457599	ENST00000374152		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000457599	ENST00000540690		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000374152	ENST00000324856		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000374152	ENST00000457599		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000374152	ENST00000374152		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000374152	ENST00000540690		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000540690	ENST00000324856		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000540690	ENST00000457599		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000540690	ENST00000374152		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
5CDS-intron	ENST00000540690	ENST00000540690		ChiTaRS3.1			BF759670	ARID1A	chr1	27105691	+	ARID1A	chr1	27105502	-
intron-3CDS	ENST00000427662	ENST00000367545		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000427662	ENST00000367526		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000427662	ENST00000480333		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-3CDS	ENST00000369774	ENST00000367545		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000369774	ENST00000367526		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000369774	ENST00000480333		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-3CDS	ENST00000355946	ENST00000367545		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000355946	ENST00000367526		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000355946	ENST00000480333		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-3CDS	ENST00000315994	ENST00000367545		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000315994	ENST00000367526		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000315994	ENST00000480333		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-3CDS	ENST00000540321	ENST00000367545		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000540321	ENST00000367526		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000540321	ENST00000480333		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-3CDS	ENST00000538130	ENST00000367545		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000538130	ENST00000367526		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
intron-intron	ENST00000538130	ENST00000480333		ChiTaRS3.1			BI059240	SH3PXD2A	chr10	105399646	-	UTRN	chr6	144768810	-
3UTR-intron	ENST00000301332	ENST00000380842		ChiTaRS3.1			AI797560	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-intron	ENST00000301332	ENST00000460403		ChiTaRS3.1			AI797560	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-intron	ENST00000301331	ENST00000380842		ChiTaRS3.1			AI797560	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-intron	ENST00000301331	ENST00000460403		ChiTaRS3.1			AI797560	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
intron-intron	ENST00000531423	ENST00000380842		ChiTaRS3.1			AI797560	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
intron-intron	ENST00000531423	ENST00000460403		ChiTaRS3.1			AI797560	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
intron-5UTR	ENST00000494318	ENST00000226355		ChiTaRS3.1			L32140	HNF4G	chr8	76327636	-	AFM	chr4	74347463	+
intron-5UTR	ENST00000354370	ENST00000226355		ChiTaRS3.1			L32140	HNF4G	chr8	76327636	-	AFM	chr4	74347463	+
intron-5UTR	ENST00000396423	ENST00000226355		ChiTaRS3.1			L32140	HNF4G	chr8	76327636	-	AFM	chr4	74347463	+
intron-3CDS	ENST00000408388	ENST00000366510		ChiTaRS3.1			BG474720	PVT1	chr8	129000885	-	SCCPDH	chr1	246890199	+
3UTR-3UTR	ENST00000528288	ENST00000528288		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000528288	ENST00000531516		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-3UTR	ENST00000528288	ENST00000331239		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000528288	ENST00000528099		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000528288	ENST00000540113		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000528288	ENST00000354421		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000531516	ENST00000528288		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000531516	ENST00000531516		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000531516	ENST00000331239		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000531516	ENST00000528099		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000531516	ENST00000540113		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000531516	ENST00000354421		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-3UTR	ENST00000331239	ENST00000528288		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000331239	ENST00000531516		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-3UTR	ENST00000331239	ENST00000331239		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000331239	ENST00000528099		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000331239	ENST00000540113		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-intron	ENST00000331239	ENST00000354421		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000528099	ENST00000528288		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000528099	ENST00000531516		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000528099	ENST00000331239		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000528099	ENST00000528099		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000528099	ENST00000540113		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000528099	ENST00000354421		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000540113	ENST00000528288		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000540113	ENST00000531516		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000540113	ENST00000331239		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000540113	ENST00000528099		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000540113	ENST00000540113		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000540113	ENST00000354421		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000354421	ENST00000528288		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000354421	ENST00000531516		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-3UTR	ENST00000354421	ENST00000331239		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000354421	ENST00000528099		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000354421	ENST00000540113		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
intron-intron	ENST00000354421	ENST00000354421		ChiTaRS3.1			CA311300	C11orf54	chr11	93496107	-	C11orf54	chr11	93495830	+
3UTR-3UTR	ENST00000367182	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
3UTR-3UTR	ENST00000367182	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
3UTR-intron	ENST00000367182	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
3UTR-intron	ENST00000367182	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
3UTR-intron	ENST00000367182	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
3UTR-intron	ENST00000367182	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
3UTR-intron	ENST00000367182	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000463049	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000463049	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000463049	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000463049	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000463049	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000463049	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000463049	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000507825	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000507825	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000507825	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000507825	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000507825	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000507825	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000507825	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000454264	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000454264	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000454264	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000454264	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000454264	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000454264	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000454264	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000367183	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000367183	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367183	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367183	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367183	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367183	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367183	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000367180	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000367180	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367180	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367180	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367180	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367180	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000367180	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000391947	ENST00000367182		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-3UTR	ENST00000391947	ENST00000463049		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000391947	ENST00000507825		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000391947	ENST00000454264		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000391947	ENST00000367183		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000391947	ENST00000367180		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
intron-intron	ENST00000391947	ENST00000391947		ChiTaRS3.1			DA013430	MDM4	chr1	204525522	+	MDM4	chr1	204519508	+
5CDS-intron	ENST00000319715	ENST00000504734		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000319715	ENST00000415618		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-3UTR	ENST00000319715	ENST00000452673		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-3UTR	ENST00000319715	ENST00000247461		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000319715	ENST00000512607		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000319715	ENST00000503126		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000452655	ENST00000504734		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000452655	ENST00000415618		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-3UTR	ENST00000452655	ENST00000452673		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-3UTR	ENST00000452655	ENST00000247461		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000452655	ENST00000512607		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000452655	ENST00000503126		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000381039	ENST00000504734		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000381039	ENST00000415618		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-3UTR	ENST00000381039	ENST00000452673		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-3UTR	ENST00000381039	ENST00000247461		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000381039	ENST00000512607		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000381039	ENST00000503126		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000348022	ENST00000504734		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000348022	ENST00000415618		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-3UTR	ENST00000348022	ENST00000452673		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-3UTR	ENST00000348022	ENST00000247461		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000348022	ENST00000512607		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
5CDS-intron	ENST00000348022	ENST00000503126		ChiTaRS3.1			AL046980	RBBP6	chr16	24580820	-	CANX	chr5	179157329	+
intron-intron	ENST00000228705	ENST00000374864		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000228705	ENST00000535650		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000228705	ENST00000262650		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000228705	ENST00000483727		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000551214	ENST00000374864		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000551214	ENST00000535650		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000551214	ENST00000262650		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000551214	ENST00000483727		ChiTaRS3.1			AW812340	PPM1H	chr12	63060618	+	ITCH	chr20	33029638	+
intron-intron	ENST00000544547	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000544547	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000544547	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000332345	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000332345	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000332345	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
5UTR-intron	ENST00000393310	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
5UTR-intron	ENST00000393310	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
5UTR-intron	ENST00000393310	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000410093	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000410093	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000410093	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000409441	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000409441	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000409441	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000338045	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000338045	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000338045	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000462817	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000462817	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000462817	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000542845	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000542845	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000542845	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000393314	ENST00000426256		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000393314	ENST00000326132		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-intron	ENST00000393314	ENST00000266252		ChiTaRS3.1			BX644470	LIMS1	chr2	109205075	+	RNF185	chr22	31562886	+
intron-3CDS	ENST00000331768	ENST00000331768		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000331768	ENST00000329331		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000331768	ENST00000436070		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000331768	ENST00000453938		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000329331	ENST00000331768		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000329331	ENST00000329331		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000329331	ENST00000436070		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000329331	ENST00000453938		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000436070	ENST00000331768		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000436070	ENST00000329331		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000436070	ENST00000436070		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000436070	ENST00000453938		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000453938	ENST00000331768		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000453938	ENST00000329331		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000453938	ENST00000436070		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000453938	ENST00000453938		ChiTaRS3.1			AA094080	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
In-frame	ENST00000305877	ENST00000424082		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000305877	ENST00000259351		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000305877	ENST00000394022		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000305877	ENST00000373436		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000305877	ENST00000373434		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
5CDS-intron	ENST00000305877	ENST00000394011		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
5CDS-intron	ENST00000305877	ENST00000480993		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000359540	ENST00000424082		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000359540	ENST00000259351		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000359540	ENST00000394022		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000359540	ENST00000373436		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
In-frame	ENST00000359540	ENST00000373434		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
5CDS-intron	ENST00000359540	ENST00000394011		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
5CDS-intron	ENST00000359540	ENST00000480993		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000398512	ENST00000424082		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000398512	ENST00000259351		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000398512	ENST00000394022		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000398512	ENST00000373436		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000398512	ENST00000373434		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-intron	ENST00000398512	ENST00000394011		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-intron	ENST00000398512	ENST00000480993		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000436990	ENST00000424082		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000436990	ENST00000259351		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000436990	ENST00000394022		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000436990	ENST00000373436		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-3CDS	ENST00000436990	ENST00000373434		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-intron	ENST00000436990	ENST00000394011		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
intron-intron	ENST00000436990	ENST00000480993		ChiTaRS3.1			HQ622706	BCR	chr22	23615961	+	RALGPS1	chr9	129831507	+
3UTR-intron	ENST00000328965	ENST00000406775		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
3UTR-intron	ENST00000328965	ENST00000342771		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
3UTR-intron	ENST00000328965	ENST00000403018		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
3UTR-intron	ENST00000328965	ENST00000489774		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000406775		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000342771		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000403018		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000489774		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000406775		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000342771		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000403018		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000489774		ChiTaRS3.1			R99080	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-3UTR	ENST00000367306	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000367306	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000367306	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000367306	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000367306	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000367306	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000367306	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000340006	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000340006	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000340006	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000340006	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000340006	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000340006	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000340006	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000531916	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000531916	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000531916	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000531916	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000531916	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000531916	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000531916	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000532460	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000532460	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000532460	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000532460	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000532460	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000532460	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000532460	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000533432	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000533432	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000533432	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000533432	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000533432	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000533432	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000533432	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000526723	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000526723	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000526723	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000526723	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000526723	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000526723	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000526723	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000458271	ENST00000367306		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000458271	ENST00000340006		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000458271	ENST00000531916		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-3UTR	ENST00000458271	ENST00000532460		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000458271	ENST00000533432		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000458271	ENST00000526723		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
intron-intron	ENST00000458271	ENST00000458271		ChiTaRS3.1			BF870360	CSRP1	chr1	201453046	-	CSRP1	chr1	201453184	+
5CDS-intron	ENST00000606098	ENST00000606098		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000606098	ENST00000285083		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000606098	ENST00000605932		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000606098	ENST00000435829		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000606098	ENST00000544043		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000606098	ENST00000607329		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000285083	ENST00000606098		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000285083	ENST00000285083		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000285083	ENST00000605932		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000285083	ENST00000435829		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000285083	ENST00000544043		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000285083	ENST00000607329		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000605932	ENST00000606098		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000605932	ENST00000285083		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000605932	ENST00000605932		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000605932	ENST00000435829		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000605932	ENST00000544043		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000605932	ENST00000607329		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000435829	ENST00000606098		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000435829	ENST00000285083		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000435829	ENST00000605932		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000435829	ENST00000435829		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000435829	ENST00000544043		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000435829	ENST00000607329		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000544043	ENST00000606098		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000544043	ENST00000285083		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000544043	ENST00000605932		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000544043	ENST00000435829		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000544043	ENST00000544043		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
5CDS-intron	ENST00000544043	ENST00000607329		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000607329	ENST00000606098		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000607329	ENST00000285083		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000607329	ENST00000605932		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000607329	ENST00000435829		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000607329	ENST00000544043		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000607329	ENST00000607329		ChiTaRS3.1			AW901160	OXNAD1	chr3	16343213	+	OXNAD1	chr3	16327020	+
intron-intron	ENST00000382148	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382148	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000447367	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000447367	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382150	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382150	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382152	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382152	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000509207	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000509207	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382149	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000382149	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000359001	ENST00000320389		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
intron-intron	ENST00000359001	ENST00000498729		ChiTaRS3.1			U73665	KCNIP4	chr4	20876982	-	KIF1A	chr2	241713790	+
5CDS-intron	ENST00000543086	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000543086	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000543086	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000546231	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000546231	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000546231	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000397203	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000397203	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000397203	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000360905	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000360905	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000360905	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000589028	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000589028	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000589028	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000355446	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000355446	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
5CDS-intron	ENST00000355446	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
intron-intron	ENST00000536573	ENST00000338368		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
intron-intron	ENST00000536573	ENST00000314191		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
intron-intron	ENST00000536573	ENST00000523565		ChiTaRS3.1			BE931170	ERC1	chr12	1372250	-	PRKDC	chr8	48722211	-
Frame-shit	ENST00000605788	ENST00000296043		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000605788	ENST00000473602		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
Frame-shit	ENST00000405356	ENST00000296043		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000405356	ENST00000473602		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
Frame-shit	ENST00000603742	ENST00000296043		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000603742	ENST00000473602		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
Frame-shit	ENST00000488254	ENST00000296043		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
5CDS-intron	ENST00000488254	ENST00000473602		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
3UTR-3CDS	ENST00000477977	ENST00000296043		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
3UTR-intron	ENST00000477977	ENST00000473602		ChiTaRS3.1			AA643680	NOLC1	chr10	103920514	-	SHROOM3	chr4	77676077	-
intron-intron	ENST00000507810	ENST00000507810		ChiTaRS3.1			BX113600	EPB41L4A	chr5	111560064	-	EPB41L4A	chr5	111567247	-
intron-intron	ENST00000507810	ENST00000261486		ChiTaRS3.1			BX113600	EPB41L4A	chr5	111560064	-	EPB41L4A	chr5	111567247	-
intron-intron	ENST00000261486	ENST00000507810		ChiTaRS3.1			BX113600	EPB41L4A	chr5	111560064	-	EPB41L4A	chr5	111567247	-
intron-intron	ENST00000261486	ENST00000261486		ChiTaRS3.1			BX113600	EPB41L4A	chr5	111560064	-	EPB41L4A	chr5	111567247	-
3UTR-intron	ENST00000402291	ENST00000379882		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000402291	ENST00000379868		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000402291	ENST00000379883		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000402291	ENST00000545044		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000402291	ENST00000542096		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000356719	ENST00000379882		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000356719	ENST00000379868		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000356719	ENST00000379883		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000356719	ENST00000545044		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000356719	ENST00000542096		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000295031	ENST00000379882		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000295031	ENST00000379868		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000295031	ENST00000379883		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000295031	ENST00000545044		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000295031	ENST00000542096		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000453873	ENST00000379882		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000453873	ENST00000379868		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000453873	ENST00000379883		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000453873	ENST00000545044		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
3UTR-intron	ENST00000453873	ENST00000542096		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000482513	ENST00000379882		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000482513	ENST00000379868		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000482513	ENST00000379883		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000482513	ENST00000545044		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
intron-intron	ENST00000482513	ENST00000542096		ChiTaRS3.1			CN274890	KIAA1841	chr2	61350941	+	DDX58	chr9	32493377	-
5CDS-intron	ENST00000236959	ENST00000409581		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000236959	ENST00000337386		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000236959	ENST00000357215		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000236959	ENST00000409641		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000236959	ENST00000545490		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000236959	ENST00000484774		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000540518	ENST00000409581		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000540518	ENST00000337386		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000540518	ENST00000357215		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000540518	ENST00000409641		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000540518	ENST00000545490		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000540518	ENST00000484774		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000435675	ENST00000409581		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000435675	ENST00000337386		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000435675	ENST00000357215		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000435675	ENST00000409641		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000435675	ENST00000545490		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
5CDS-intron	ENST00000435675	ENST00000484774		ChiTaRS3.1			DB224490	ATIC	chr2	216182957	+	NAB1	chr2	191518452	+
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM757640	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-intron	ENST00000546097	ENST00000546097		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000546097	ENST00000367481		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000546097	ENST00000367480		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000546097	ENST00000321680		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000546097	ENST00000179882		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367481	ENST00000546097		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367481	ENST00000367481		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367481	ENST00000367480		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367481	ENST00000321680		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367481	ENST00000179882		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367480	ENST00000546097		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367480	ENST00000367481		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367480	ENST00000367480		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367480	ENST00000321680		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000367480	ENST00000179882		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000321680	ENST00000546097		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000321680	ENST00000367481		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000321680	ENST00000367480		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000321680	ENST00000321680		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000321680	ENST00000179882		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000179882	ENST00000546097		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000179882	ENST00000367481		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000179882	ENST00000367480		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000179882	ENST00000321680		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000179882	ENST00000179882		ChiTaRS3.1			BG006700	STXBP5	chr6	147527106	-	STXBP5	chr6	147655358	-
intron-intron	ENST00000397661	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000397661	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000592199	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587760	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000585575	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000360105	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588228	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000587260	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000358552	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000397661		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000592199		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000587760		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000585575		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000360105		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000588228		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000587260		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000358552		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000588680	ENST00000588680		ChiTaRS3.1			AA323470	NFIX	chr19	13136409	-	NFIX	chr19	13136500	+
intron-intron	ENST00000428173	ENST00000428173		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000428173	ENST00000243300		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000428173	ENST00000536164		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000428173	ENST00000540278		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000243300	ENST00000428173		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000243300	ENST00000243300		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000243300	ENST00000536164		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000243300	ENST00000540278		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000536164	ENST00000428173		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000536164	ENST00000243300		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000536164	ENST00000536164		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000536164	ENST00000540278		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000540278	ENST00000428173		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000540278	ENST00000243300		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000540278	ENST00000536164		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000540278	ENST00000540278		ChiTaRS3.1			AL036710	NRK	chrX	105109866	-	NRK	chrX	105109300	+
intron-intron	ENST00000281928	ENST00000476257		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000281928	ENST00000461846		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000281928	ENST00000264677		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000281928	ENST00000471111		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000281928	ENST00000465031		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000551197	ENST00000476257		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000551197	ENST00000461846		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000551197	ENST00000264677		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000551197	ENST00000471111		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000551197	ENST00000465031		ChiTaRS3.1			CK824480	MED13L	chr12	116558166	-	SERPINI2	chr3	167173955	-
intron-intron	ENST00000254066	ENST00000254066		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000254066	ENST00000394089		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000254066	ENST00000425707		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000254066	ENST00000394086		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000254066	ENST00000394081		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000254066	ENST00000420042		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394089	ENST00000254066		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394089	ENST00000394089		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394089	ENST00000425707		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394089	ENST00000394086		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394089	ENST00000394081		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394089	ENST00000420042		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000425707	ENST00000254066		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000425707	ENST00000394089		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000425707	ENST00000425707		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000425707	ENST00000394086		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000425707	ENST00000394081		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000425707	ENST00000420042		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394086	ENST00000254066		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394086	ENST00000394089		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394086	ENST00000425707		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394086	ENST00000394086		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394086	ENST00000394081		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394086	ENST00000420042		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394081	ENST00000254066		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394081	ENST00000394089		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394081	ENST00000425707		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394081	ENST00000394086		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394081	ENST00000394081		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000394081	ENST00000420042		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000420042	ENST00000254066		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000420042	ENST00000394089		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000420042	ENST00000425707		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000420042	ENST00000394086		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000420042	ENST00000394081		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
intron-intron	ENST00000420042	ENST00000420042		ChiTaRS3.1			BI260210	RARA	chr17	38556859	+	RARA	chr17	38556814	-
In-frame	ENST00000276893	ENST00000338086		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000319801		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000361078		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000536417		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000403432		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
5CDS-intron	ENST00000276893	ENST00000420234		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000338086		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000319801		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000361078		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000536417		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000403432		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-intron	ENST00000381373	ENST00000420234		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000338086		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000319801		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000361078		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000536417		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000403432		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-intron	ENST00000485617	ENST00000420234		ChiTaRS3.1			BE697670	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-intron	ENST00000027335	ENST00000548411		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000027335	ENST00000281474		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000027335	ENST00000551848		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000027335	ENST00000550207		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000027335	ENST00000551086		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000441892	ENST00000548411		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000441892	ENST00000281474		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000441892	ENST00000551848		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000441892	ENST00000550207		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000441892	ENST00000551086		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000450165	ENST00000548411		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000450165	ENST00000281474		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000450165	ENST00000551848		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000450165	ENST00000550207		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000450165	ENST00000551086		ChiTaRS3.1			AA045860	CDH17	chr8	95140122	+	BICD1	chr12	32332710	-
intron-intron	ENST00000274217	ENST00000274217		ChiTaRS3.1			BQ027700	FAM105A	chr5	14601748	+	FAM105A	chr5	14601227	-
intron-intron	ENST00000274217	ENST00000506258		ChiTaRS3.1			BQ027700	FAM105A	chr5	14601748	+	FAM105A	chr5	14601227	-
intron-intron	ENST00000506258	ENST00000274217		ChiTaRS3.1			BQ027700	FAM105A	chr5	14601748	+	FAM105A	chr5	14601227	-
intron-intron	ENST00000506258	ENST00000506258		ChiTaRS3.1			BQ027700	FAM105A	chr5	14601748	+	FAM105A	chr5	14601227	-
intron-intron	ENST00000535729	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000535729	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000431221	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000547005	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000311893	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000338291	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000392807	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000539593	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000468888		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000399362		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000539981		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000359576		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000307312		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000480013		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000461133		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000313350		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000487200		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000333778		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000540154	ENST00000482896		ChiTaRS3.1			DA571580	ISCU	chr12	108957176	+	CLASP2	chr3	33666703	-
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408952	AFF1	chr4	87994386	+	KMT2A	chr11	118355735	+
Frame-shit	ENST00000336890	ENST00000336890		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000336890	ENST00000333070		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000336890	ENST00000373564		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000333070	ENST00000336890		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000333070	ENST00000333070		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000333070	ENST00000373564		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000373564	ENST00000336890		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000373564	ENST00000333070		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
Frame-shit	ENST00000373564	ENST00000373564		ChiTaRS3.1			AI817225	LCK	chr1	32740650	+	LCK	chr1	32740632	-
intron-3UTR	ENST00000371989	ENST00000371989		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371989	ENST00000485435		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371989	ENST00000545297		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371989	ENST00000467910		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371989	ENST00000371991		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-3UTR	ENST00000485435	ENST00000371989		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000485435	ENST00000485435		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000485435	ENST00000545297		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000485435	ENST00000467910		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000485435	ENST00000371991		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-3UTR	ENST00000545297	ENST00000371989		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000545297	ENST00000485435		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000545297	ENST00000545297		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000545297	ENST00000467910		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000545297	ENST00000371991		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-3UTR	ENST00000467910	ENST00000371989		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000467910	ENST00000485435		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000467910	ENST00000545297		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000467910	ENST00000467910		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000467910	ENST00000371991		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-3UTR	ENST00000371991	ENST00000371989		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371991	ENST00000485435		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371991	ENST00000545297		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371991	ENST00000467910		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
intron-intron	ENST00000371991	ENST00000371991		ChiTaRS3.1			BG403370	SURF4	chr9	136228773	+	SURF4	chr9	136228724	-
Frame-shit	ENST00000369144	ENST00000355697		ChiTaRS3.1			BM771430	EIF3A	chr10	120840140	-	SFXN4	chr10	120914690	-
Frame-shit	ENST00000369144	ENST00000330036		ChiTaRS3.1			BM771430	EIF3A	chr10	120840140	-	SFXN4	chr10	120914690	-
5CDS-5UTR	ENST00000369144	ENST00000461438		ChiTaRS3.1			BM771430	EIF3A	chr10	120840140	-	SFXN4	chr10	120914690	-
intron-3CDS	ENST00000541549	ENST00000355697		ChiTaRS3.1			BM771430	EIF3A	chr10	120840140	-	SFXN4	chr10	120914690	-
intron-3CDS	ENST00000541549	ENST00000330036		ChiTaRS3.1			BM771430	EIF3A	chr10	120840140	-	SFXN4	chr10	120914690	-
intron-5UTR	ENST00000541549	ENST00000461438		ChiTaRS3.1			BM771430	EIF3A	chr10	120840140	-	SFXN4	chr10	120914690	-
intron-intron	ENST00000263966	ENST00000263966		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000263966	ENST00000482333		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000263966	ENST00000496897		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000482333	ENST00000263966		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000482333	ENST00000482333		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000482333	ENST00000496897		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000496897	ENST00000263966		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000496897	ENST00000482333		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-intron	ENST00000496897	ENST00000496897		ChiTaRS3.1			BF369940	USP13	chr3	179452742	+	USP13	chr3	179452600	-
intron-3UTR	ENST00000379471	ENST00000379471		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000379471	ENST00000464829		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000379471	ENST00000455041		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-3UTR	ENST00000464829	ENST00000379471		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000464829	ENST00000464829		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000464829	ENST00000455041		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-3UTR	ENST00000455041	ENST00000379471		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000455041	ENST00000464829		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000455041	ENST00000455041		ChiTaRS3.1			AA292150	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-3UTR	ENST00000253680	ENST00000253680		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000253680	ENST00000397372		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000253680	ENST00000593154		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000253680	ENST00000588246		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000397372	ENST00000253680		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000397372	ENST00000397372		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000397372	ENST00000593154		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000397372	ENST00000588246		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000593154	ENST00000253680		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000593154	ENST00000397372		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000593154	ENST00000593154		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000593154	ENST00000588246		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000588246	ENST00000253680		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000588246	ENST00000397372		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000588246	ENST00000593154		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3UTR	ENST00000588246	ENST00000588246		ChiTaRS3.1			AA805250	HSH2D	chr19	16266626	-	HSH2D	chr19	16269121	-
intron-3CDS	ENST00000356300	ENST00000356300		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-3CDS	ENST00000356300	ENST00000397118		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-intron	ENST00000356300	ENST00000544177		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-3CDS	ENST00000397118	ENST00000356300		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-3CDS	ENST00000397118	ENST00000397118		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-intron	ENST00000397118	ENST00000544177		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-3CDS	ENST00000544177	ENST00000356300		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-3CDS	ENST00000544177	ENST00000397118		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-intron	ENST00000544177	ENST00000544177		ChiTaRS3.1			BY798950	JPH4	chr14	24042678	-	JPH4	chr14	24044936	-
intron-intron	ENST00000485752	ENST00000369981		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000485752	ENST00000369985		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000485752	ENST00000369977		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000485752	ENST00000369975		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000485752	ENST00000462633		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000295317	ENST00000369981		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000295317	ENST00000369985		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000295317	ENST00000369977		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000295317	ENST00000369975		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000295317	ENST00000462633		ChiTaRS3.1			DN916170	RNF149	chr2	101903520	+	MYO6	chr6	76497776	-
intron-intron	ENST00000295897	ENST00000346798		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000354192		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000348990		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000357903		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000358918		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000359726		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000448388		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000440126		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000439274		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000474136		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000346798		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000354192		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000348990		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000357903		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000358918		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000359726		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000448388		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000440126		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000439274		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000474136		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000346798		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000354192		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000348990		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000357903		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000358918		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000359726		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000448388		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000440126		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000439274		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000474136		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000346798		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000354192		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000348990		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000357903		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000358918		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000359726		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000448388		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000440126		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000439274		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000474136		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000346798		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000354192		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000348990		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000357903		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000358918		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000359726		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000448388		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000440126		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000439274		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000474136		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000346798		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000354192		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000348990		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000357903		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000358918		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000359726		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000448388		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000440126		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000439274		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000474136		ChiTaRS3.1			AW072570	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000417237	ENST00000417237		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000417237	ENST00000342649		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000417237	ENST00000383746		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000417237	ENST00000396078		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000417237	ENST00000462612		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000342649	ENST00000417237		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000342649	ENST00000342649		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000342649	ENST00000383746		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000342649	ENST00000396078		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000342649	ENST00000462612		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000383746	ENST00000417237		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000383746	ENST00000342649		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000383746	ENST00000383746		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000383746	ENST00000396078		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000383746	ENST00000462612		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000396078	ENST00000417237		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000396078	ENST00000342649		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000396078	ENST00000383746		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000396078	ENST00000396078		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000396078	ENST00000462612		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000462612	ENST00000417237		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000462612	ENST00000342649		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000462612	ENST00000383746		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000462612	ENST00000396078		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
intron-intron	ENST00000462612	ENST00000462612		ChiTaRS3.1			BX498930	TCAIM	chr3	44437650	+	TCAIM	chr3	44402675	+
In-frame	ENST00000361138	ENST00000361138		ChiTaRS3.1			BE835280	SMC5	chr9	72895682	-	SMC5	chr9	72913101	-
5CDS-intron	ENST00000361138	ENST00000471372		ChiTaRS3.1			BE835280	SMC5	chr9	72895682	-	SMC5	chr9	72913101	-
intron-3CDS	ENST00000471372	ENST00000361138		ChiTaRS3.1			BE835280	SMC5	chr9	72895682	-	SMC5	chr9	72913101	-
intron-intron	ENST00000471372	ENST00000471372		ChiTaRS3.1			BE835280	SMC5	chr9	72895682	-	SMC5	chr9	72913101	-
intron-intron	ENST00000396594	ENST00000223129		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000396594	ENST00000406109		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000396594	ENST00000396682		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000396594	ENST00000401447		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539815	ENST00000223129		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539815	ENST00000406109		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539815	ENST00000396682		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539815	ENST00000401447		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000543356	ENST00000223129		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000543356	ENST00000406109		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000543356	ENST00000396682		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000543356	ENST00000401447		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539208	ENST00000223129		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539208	ENST00000406109		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539208	ENST00000396682		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000539208	ENST00000401447		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000447283	ENST00000223129		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000447283	ENST00000406109		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000447283	ENST00000396682		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000447283	ENST00000401447		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000377902	ENST00000223129		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000377902	ENST00000406109		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000377902	ENST00000396682		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-intron	ENST00000377902	ENST00000401447		ChiTaRS3.1			AW753960	GNE	chr9	36237296	-	RPA3	chr7	7722774	+
intron-3UTR	ENST00000225665	ENST00000506491		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-3UTR	ENST00000225665	ENST00000508657		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-3UTR	ENST00000225665	ENST00000309755		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000225665	ENST00000506873		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000225665	ENST00000541417		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000225665	ENST00000394937		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-3UTR	ENST00000544061	ENST00000506491		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-3UTR	ENST00000544061	ENST00000508657		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-3UTR	ENST00000544061	ENST00000309755		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000544061	ENST00000506873		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000544061	ENST00000541417		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000544061	ENST00000394937		ChiTaRS3.1			AI480110	SLC25A11	chr17	4840655	+	KLHL3	chr5	136953559	+
intron-intron	ENST00000353024	ENST00000353024		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000353024	ENST00000392712		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000353024	ENST00000368849		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000353024	ENST00000368848		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000353024	ENST00000538902		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000392712	ENST00000353024		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000392712	ENST00000392712		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000392712	ENST00000368849		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000392712	ENST00000368848		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000392712	ENST00000538902		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368849	ENST00000353024		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368849	ENST00000392712		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368849	ENST00000368849		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368849	ENST00000368848		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368849	ENST00000538902		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368848	ENST00000353024		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368848	ENST00000392712		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368848	ENST00000368849		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368848	ENST00000368848		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000368848	ENST00000538902		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000538902	ENST00000353024		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000538902	ENST00000392712		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000538902	ENST00000368849		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000538902	ENST00000368848		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-intron	ENST00000538902	ENST00000538902		ChiTaRS3.1			CV324740	TUFT1	chr1	151520417	-	TUFT1	chr1	151519785	+
intron-3CDS	ENST00000599056	ENST00000449054		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000599056	ENST00000379238		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000599056	ENST00000360802		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000599056	ENST00000379239		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599056	ENST00000539807		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599056	ENST00000418786		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599056	ENST00000379225		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599056	ENST00000379235		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599056	ENST00000480885		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000418871	ENST00000449054		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000418871	ENST00000379238		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000418871	ENST00000360802		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000418871	ENST00000379239		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000418871	ENST00000539807		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000418871	ENST00000418786		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000418871	ENST00000379225		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000418871	ENST00000379235		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000418871	ENST00000480885		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000429604	ENST00000449054		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000429604	ENST00000379238		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000429604	ENST00000360802		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000429604	ENST00000379239		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000429604	ENST00000539807		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000429604	ENST00000418786		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000429604	ENST00000379225		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000429604	ENST00000379235		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000429604	ENST00000480885		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000601421	ENST00000449054		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000601421	ENST00000379238		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000601421	ENST00000360802		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000601421	ENST00000379239		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000601421	ENST00000539807		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000601421	ENST00000418786		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000601421	ENST00000379225		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000601421	ENST00000379235		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000601421	ENST00000480885		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000355147	ENST00000449054		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000355147	ENST00000379238		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000355147	ENST00000360802		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000355147	ENST00000379239		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000355147	ENST00000539807		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000355147	ENST00000418786		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000355147	ENST00000379225		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000355147	ENST00000379235		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000355147	ENST00000480885		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000599729	ENST00000449054		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000599729	ENST00000379238		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-3CDS	ENST00000599729	ENST00000360802		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000599729	ENST00000379239		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599729	ENST00000539807		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599729	ENST00000418786		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599729	ENST00000379225		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599729	ENST00000379235		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-intron	ENST00000599729	ENST00000480885		ChiTaRS3.1			AW175600	ZNF160	chr19	53593616	-	UBAP2	chr9	33989055	-
intron-5UTR	ENST00000392341	ENST00000529631		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392341	ENST00000529191		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392341	ENST00000273550		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392341	ENST00000526640		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-intron	ENST00000392341	ENST00000532601		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000582743	ENST00000529631		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000582743	ENST00000529191		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000582743	ENST00000273550		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000582743	ENST00000526640		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-intron	ENST00000582743	ENST00000532601		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000584781	ENST00000529631		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000584781	ENST00000529191		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000584781	ENST00000273550		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000584781	ENST00000526640		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-intron	ENST00000584781	ENST00000532601		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392339	ENST00000529631		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392339	ENST00000529191		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392339	ENST00000273550		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000392339	ENST00000526640		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-intron	ENST00000392339	ENST00000532601		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000581287	ENST00000529631		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000581287	ENST00000529191		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000581287	ENST00000273550		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-5UTR	ENST00000581287	ENST00000526640		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-intron	ENST00000581287	ENST00000532601		ChiTaRS3.1			AK127090	SLC16A3	chr17	80189766	+	FTH1	chr11	61734967	-
intron-intron	ENST00000254900	ENST00000395388		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000374982		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000383127		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000459705		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000434866		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000416883		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000481943		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000411505		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000414698		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000546379		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000493431		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000418111		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000383259		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000551750		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000461633		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000383258		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000442960		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000549531		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000254900	ENST00000482781		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000254900	ENST00000415767		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000411524		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000553193		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000498597		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000254900	ENST00000427753		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000395388		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000374982		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000383127		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000459705		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000434866		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000416883		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000481943		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000411505		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000414698		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000546379		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000493431		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000418111		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000383259		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000551750		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000461633		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000383258		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000442960		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000549531		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000230901	ENST00000482781		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000230901	ENST00000415767		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000411524		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000553193		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000498597		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000230901	ENST00000427753		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000395388		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000374982		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000383127		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000459705		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000434866		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000416883		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000481943		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000411505		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000414698		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000546379		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000493431		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000418111		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000383259		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000551750		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000461633		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000383258		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000442960		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000549531		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000402931	ENST00000482781		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000402931	ENST00000415767		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000411524		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000553193		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000498597		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000402931	ENST00000427753		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000395388		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000374982		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000383127		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000459705		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000434866		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000416883		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000481943		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000411505		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000414698		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000546379		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000493431		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000418111		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000383259		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000551750		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000461633		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000383258		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000442960		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000549531		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000411594	ENST00000482781		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000411594	ENST00000415767		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000411524		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000553193		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000498597		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000411594	ENST00000427753		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000395388		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000374982		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000383127		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000459705		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000434866		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000416883		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000481943		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000411505		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000414698		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000546379		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000493431		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000418111		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000383259		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000551750		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000461633		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000383258		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000442960		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000549531		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000455658	ENST00000482781		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000455658	ENST00000415767		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000411524		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000553193		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000498597		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000455658	ENST00000427753		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000395388		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000374982		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000383127		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000459705		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000434866		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000416883		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000481943		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000411505		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000414698		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000546379		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000493431		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000418111		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000383259		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000551750		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000461633		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000383258		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000442960		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000549531		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000515014	ENST00000482781		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000515014	ENST00000415767		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000411524		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000553193		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000498597		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-intron	ENST00000515014	ENST00000427753		ChiTaRS3.1			AI335540	BRD8	chr5	137492769	+	HLA-DRA	chr6	3752490	-
intron-3UTR	ENST00000466380	ENST00000374847		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000466380	ENST00000374848		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000466380	ENST00000374851		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-intron	ENST00000466380	ENST00000482920		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000393716	ENST00000374847		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000393716	ENST00000374848		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000393716	ENST00000374851		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-intron	ENST00000393716	ENST00000482920		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000337940	ENST00000374847		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000337940	ENST00000374848		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-3UTR	ENST00000337940	ENST00000374851		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-intron	ENST00000337940	ENST00000482920		ChiTaRS3.1			CA314620	NR1I2	chr3	119511381	-	TMEM246	chr9	104238044	-
intron-intron	ENST00000361525	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000366940	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000361395	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000366938	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000359162	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000493603	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000463665	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000487276	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000493748	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000471371	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000391890	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000366937	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000408911	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000360012	ENST00000219162		ChiTaRS3.1			BF759140	ESRRG	chr1	217007502	+	MT4	chr16	56601783	-
intron-intron	ENST00000607016	ENST00000507668		ChiTaRS3.1			AA314460	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000512972		ChiTaRS3.1			AA314460	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000509193		ChiTaRS3.1			AA314460	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000512721		ChiTaRS3.1			AA314460	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
intron-intron	ENST00000607016	ENST00000513907		ChiTaRS3.1			AA314460	NUDT3	chr6	34256662	-	SERINC5	chr5	79435910	-
5UTR-5UTR	ENST00000397933	ENST00000397933		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5UTR-5UTR	ENST00000397933	ENST00000473835		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5UTR-5UTR	ENST00000397933	ENST00000493598		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5CDS-5UTR	ENST00000473835	ENST00000397933		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5CDS-5UTR	ENST00000473835	ENST00000473835		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5CDS-5UTR	ENST00000473835	ENST00000493598		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5CDS-5UTR	ENST00000493598	ENST00000397933		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5CDS-5UTR	ENST00000493598	ENST00000473835		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
5CDS-5UTR	ENST00000493598	ENST00000493598		ChiTaRS3.1			BF510130	U2SURP	chr3	142735187	-	U2SURP	chr3	142731079	+
3UTR-intron	ENST00000534336	ENST00000369683		ChiTaRS3.1			BF902190	MALAT1	chr11	65268130	+	XPNPEP1	chr10	111663466	-
3UTR-intron	ENST00000534336	ENST00000369680		ChiTaRS3.1			BF902190	MALAT1	chr11	65268130	+	XPNPEP1	chr10	111663466	-
3UTR-intron	ENST00000534336	ENST00000502935		ChiTaRS3.1			BF902190	MALAT1	chr11	65268130	+	XPNPEP1	chr10	111663466	-
3UTR-intron	ENST00000534336	ENST00000322238		ChiTaRS3.1			BF902190	MALAT1	chr11	65268130	+	XPNPEP1	chr10	111663466	-
3UTR-intron	ENST00000534336	ENST00000430337		ChiTaRS3.1			BF902190	MALAT1	chr11	65268130	+	XPNPEP1	chr10	111663466	-
3UTR-intron	ENST00000373894	ENST00000394903		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000373894	ENST00000338820		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000373894	ENST00000444643		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000373894	ENST00000461919		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000373888	ENST00000394903		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000373888	ENST00000338820		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000373888	ENST00000444643		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000373888	ENST00000461919		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000466793	ENST00000394903		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000466793	ENST00000338820		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000466793	ENST00000444643		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-intron	ENST00000466793	ENST00000461919		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000549094	ENST00000394903		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000549094	ENST00000338820		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000549094	ENST00000444643		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
3UTR-intron	ENST00000549094	ENST00000461919		ChiTaRS3.1			AI571080	SMPDL3B	chr1	28285524	-	DNAJB12	chr10	74111618	+
intron-3CDS	ENST00000263245	ENST00000263245		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000263245	ENST00000429508		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000263245	ENST00000437119		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000429508	ENST00000263245		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000429508	ENST00000429508		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000429508	ENST00000437119		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000437119	ENST00000263245		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000437119	ENST00000429508		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
intron-3CDS	ENST00000437119	ENST00000437119		ChiTaRS3.1			AU185860	ARFGAP3	chr22	43203143	-	ARFGAP3	chr22	43219710	-
5CDS-intron	ENST00000260356	ENST00000339656		ChiTaRS3.1			BG250640	THBS1	chr15	39885419	+	ZNF587	chr19	58357351	+
5CDS-intron	ENST00000260356	ENST00000423137		ChiTaRS3.1			BG250640	THBS1	chr15	39885419	+	ZNF587	chr19	58357351	+
5CDS-intron	ENST00000260356	ENST00000419854		ChiTaRS3.1			BG250640	THBS1	chr15	39885419	+	ZNF587	chr19	58357351	+
5CDS-intron	ENST00000260356	ENST00000596433		ChiTaRS3.1			BG250640	THBS1	chr15	39885419	+	ZNF587	chr19	58357351	+
intron-3UTR	ENST00000381271	ENST00000338458		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-intron	ENST00000381271	ENST00000496106		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-intron	ENST00000381271	ENST00000498517		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-3UTR	ENST00000381271	ENST00000296315		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-3UTR	ENST00000381271	ENST00000413728		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-intron	ENST00000381271	ENST00000497267		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-intron	ENST00000381271	ENST00000495373		ChiTaRS3.1			AW367380	KLHL42	chr12	27949515	+	ARHGEF3	chr3	56761999	-
intron-3CDS	ENST00000543774	ENST00000356577		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-3CDS	ENST00000543774	ENST00000290239		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000543774	ENST00000381692		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000543774	ENST00000300278		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000543774	ENST00000381679		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000543774	ENST00000470533		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-3CDS	ENST00000448516	ENST00000356577		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-3CDS	ENST00000448516	ENST00000290239		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000448516	ENST00000381692		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000448516	ENST00000300278		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000448516	ENST00000381679		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000448516	ENST00000470533		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-3CDS	ENST00000219797	ENST00000356577		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-3CDS	ENST00000219797	ENST00000290239		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000219797	ENST00000381692		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000219797	ENST00000300278		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000219797	ENST00000381679		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000219797	ENST00000470533		ChiTaRS3.1			AW962600	KAT8	chr16	31142072	-	SON	chr21	34923652	-
intron-intron	ENST00000379834	ENST00000467442		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000476809		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000485419		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000337808		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000527095		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000412423		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000460298		ChiTaRS3.1			BF359970	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000424272	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000424272	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000424272	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000424272	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000424272	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000424272	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000424272	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409929	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409589	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409329	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000409288	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000410023	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000424272		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000409929		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000409589		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000409329		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000409288		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000410023		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
intron-intron	ENST00000233946	ENST00000233946		ChiTaRS3.1			AF054830	IL1R1	chr2	102783590	-	IL1R1	chr2	102784733	-
3UTR-3UTR	ENST00000261558	ENST00000261558		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
3UTR-intron	ENST00000261558	ENST00000431972		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
3UTR-intron	ENST00000261558	ENST00000556723		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
intron-3UTR	ENST00000431972	ENST00000261558		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
intron-intron	ENST00000431972	ENST00000431972		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
intron-intron	ENST00000431972	ENST00000556723		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
intron-3UTR	ENST00000556723	ENST00000261558		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
intron-intron	ENST00000556723	ENST00000431972		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
intron-intron	ENST00000556723	ENST00000556723		ChiTaRS3.1			BQ221360	AP5M1	chr14	57756397	-	AP5M1	chr14	57756448	+
3UTR-3UTR	ENST00000369301	ENST00000357037		ChiTaRS3.1			CB045450	NHLRC2	chr10	115675457	+	PTRF	chr17	40555164	-
intron-intron	ENST00000438331	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000438331	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000438331	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000372231	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000372231	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000372231	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000360615	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000360615	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000360615	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000265447	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000265447	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000265447	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000422982	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000422982	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000422982	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000535999	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000535999	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000535999	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000537102	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000537102	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000537102	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000463657	ENST00000303688		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000463657	ENST00000383794		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000463657	ENST00000476763		ChiTaRS3.1			BI019620	ANXA11	chr10	81921653	+	CCDC174	chr3	14699355	+
intron-intron	ENST00000372391	ENST00000372391		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000372391	ENST00000372388		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000372391	ENST00000459739		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000372388	ENST00000372391		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000372388	ENST00000372388		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000372388	ENST00000459739		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000459739	ENST00000372391		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000459739	ENST00000372388		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000459739	ENST00000459739		ChiTaRS3.1			AW277040	DLG5	chr10	79558395	-	DLG5	chr10	79557917	+
intron-intron	ENST00000397906	ENST00000262570		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000397906	ENST00000448878		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000397906	ENST00000476546		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000397906	ENST00000542753		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000490475	ENST00000262570		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000490475	ENST00000448878		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000490475	ENST00000476546		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-intron	ENST00000490475	ENST00000542753		ChiTaRS3.1			AF119850	TTC28	chr22	28692782	+	CHCHD3	chr7	132720687	-
intron-3CDS	ENST00000262093	ENST00000262093		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-3CDS	ENST00000262093	ENST00000382873		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-intron	ENST00000262093	ENST00000585699		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-3CDS	ENST00000382873	ENST00000262093		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-3CDS	ENST00000382873	ENST00000382873		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-intron	ENST00000382873	ENST00000585699		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-3CDS	ENST00000585699	ENST00000262093		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-3CDS	ENST00000585699	ENST00000382873		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
intron-intron	ENST00000585699	ENST00000585699		ChiTaRS3.1			AW607390	FECH	chr18	55226434	-	FECH	chr18	55218563	+
Frame-shit	ENST00000556440	ENST00000392133		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
Frame-shit	ENST00000556440	ENST00000392132		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
5CDS-intron	ENST00000556440	ENST00000471649		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
Frame-shit	ENST00000553412	ENST00000392133		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
Frame-shit	ENST00000553412	ENST00000392132		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
5CDS-intron	ENST00000553412	ENST00000471649		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-3CDS	ENST00000581056	ENST00000392133		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-3CDS	ENST00000581056	ENST00000392132		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-intron	ENST00000581056	ENST00000471649		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-3CDS	ENST00000577476	ENST00000392133		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-3CDS	ENST00000577476	ENST00000392132		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-intron	ENST00000577476	ENST00000471649		ChiTaRS3.1			CN401380	CEP95	chr17	62515529	+	XRCC5	chr2	217069071	+
intron-intron	ENST00000318217	ENST00000317173		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000441698		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000518255		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000521209		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000528246		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000382490		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000517594		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000317173		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000441698		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000518255		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000521209		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000528246		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000382490		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000517594		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000317173		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000441698		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000518255		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000521209		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000528246		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000382490		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000517594		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000317173		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000441698		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000518255		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000521209		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000528246		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000382490		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000517594		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000317173		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000441698		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000518255		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000521209		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000528246		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000382490		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000517594		ChiTaRS3.1			AW974960	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-3UTR	ENST00000474855	ENST00000474855		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000474855	ENST00000272519		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-intron	ENST00000474855	ENST00000420510		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000474855	ENST00000404963		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000474855	ENST00000470417		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000474855		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000272519		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-intron	ENST00000272519	ENST00000420510		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000404963		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000470417		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000474855		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000272519		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-intron	ENST00000420510	ENST00000420510		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000404963		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000470417		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000474855		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000272519		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-intron	ENST00000404963	ENST00000420510		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000404963		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000470417		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000474855		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000272519		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-intron	ENST00000470417	ENST00000420510		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000404963		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000470417		ChiTaRS3.1			BG986540	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-intron	ENST00000367120	ENST00000306357		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000367120	ENST00000574431		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000367120	ENST00000573373		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000537984	ENST00000306357		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000537984	ENST00000574431		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000537984	ENST00000573373		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000463979	ENST00000306357		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000463979	ENST00000574431		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000463979	ENST00000573373		ChiTaRS3.1			BF853570	IKBKE	chr1	206651980	-	STX8	chr17	9443030	+
intron-intron	ENST00000361757	ENST00000362227		ChiTaRS3.1			BG011650	SBNO2	chr19	1114390	+	MIR503HG	chrX	133678783	-
intron-intron	ENST00000587024	ENST00000362227		ChiTaRS3.1			BG011650	SBNO2	chr19	1114390	+	MIR503HG	chrX	133678783	-
intron-intron	ENST00000438103	ENST00000362227		ChiTaRS3.1			BG011650	SBNO2	chr19	1114390	+	MIR503HG	chrX	133678783	-
intron-3CDS	ENST00000341776	ENST00000394332		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000341776	ENST00000394333		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000341776	ENST00000479035		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000341776	ENST00000245857		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000341776	ENST00000577407		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-3CDS	ENST00000397311	ENST00000394332		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000397311	ENST00000394333		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000397311	ENST00000479035		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000397311	ENST00000245857		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000397311	ENST00000577407		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-3CDS	ENST00000541660	ENST00000394332		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000541660	ENST00000394333		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000541660	ENST00000479035		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000541660	ENST00000245857		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000541660	ENST00000577407		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-3CDS	ENST00000474854	ENST00000394332		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000474854	ENST00000394333		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000474854	ENST00000479035		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000474854	ENST00000245857		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-intron	ENST00000474854	ENST00000577407		ChiTaRS3.1			BQ311440	JARID2	chr6	15498498	-	RPL23	chr17	37006729	-
intron-3CDS	ENST00000225964	ENST00000225964		ChiTaRS3.1			BM674510	COL1A1	chr17	48261663	+	COL1A1	chr17	48262991	-
5CDS-intron	ENST00000259239	ENST00000409261		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000259239	ENST00000409213		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000259239	ENST00000405974		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000259239	ENST00000317721		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000259239	ENST00000473859		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000409935	ENST00000409261		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000409935	ENST00000409213		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000409935	ENST00000405974		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000409935	ENST00000317721		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
5CDS-intron	ENST00000409935	ENST00000473859		ChiTaRS3.1			BF918530	IMP4	chr2	131103798	+	NCKAP5	chr2	133959015	+
intron-intron	ENST00000463745	ENST00000450689		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000463745	ENST00000297222		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000463745	ENST00000444627		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000463745	ENST00000416314		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000463745	ENST00000490995		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000394206	ENST00000450689		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000394206	ENST00000297222		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000394206	ENST00000444627		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000394206	ENST00000416314		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000394206	ENST00000490995		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000335979	ENST00000450689		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000335979	ENST00000297222		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000335979	ENST00000444627		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000335979	ENST00000416314		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000335979	ENST00000490995		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000496713	ENST00000450689		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000496713	ENST00000297222		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000496713	ENST00000444627		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000496713	ENST00000416314		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-intron	ENST00000496713	ENST00000490995		ChiTaRS3.1			BP218270	ARL6	chr3	97483912	+	KIAA1324L	chr7	86512354	-
intron-3CDS	ENST00000306065	ENST00000306065		ChiTaRS3.1			BE079590	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000306065	ENST00000587352		ChiTaRS3.1			BE079590	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-3CDS	ENST00000587352	ENST00000306065		ChiTaRS3.1			BE079590	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000587352	ENST00000587352		ChiTaRS3.1			BE079590	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000471014	ENST00000025301		ChiTaRS3.1			AW361450	CTNNB1	chr3	41280355	-	AKAP11	chr13	42869483	-
intron-intron	ENST00000405570	ENST00000025301		ChiTaRS3.1			AW361450	CTNNB1	chr3	41280355	-	AKAP11	chr13	42869483	-
intron-intron	ENST00000396183	ENST00000025301		ChiTaRS3.1			AW361450	CTNNB1	chr3	41280355	-	AKAP11	chr13	42869483	-
intron-intron	ENST00000349496	ENST00000025301		ChiTaRS3.1			AW361450	CTNNB1	chr3	41280355	-	AKAP11	chr13	42869483	-
intron-intron	ENST00000453024	ENST00000025301		ChiTaRS3.1			AW361450	CTNNB1	chr3	41280355	-	AKAP11	chr13	42869483	-
intron-intron	ENST00000396185	ENST00000025301		ChiTaRS3.1			AW361450	CTNNB1	chr3	41280355	-	AKAP11	chr13	42869483	-
In-frame	ENST00000359947	ENST00000359947		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000359947	ENST00000438120		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000359947	ENST00000372413		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000359947	ENST00000372414		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000359947	ENST00000422171		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
5CDS-3UTR	ENST00000359947	ENST00000496447		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000438120	ENST00000359947		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000438120	ENST00000438120		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000438120	ENST00000372413		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000438120	ENST00000372414		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000438120	ENST00000422171		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
5CDS-3UTR	ENST00000438120	ENST00000496447		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372413	ENST00000359947		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372413	ENST00000438120		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372413	ENST00000372413		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372413	ENST00000372414		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372413	ENST00000422171		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
5CDS-3UTR	ENST00000372413	ENST00000496447		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372414	ENST00000359947		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372414	ENST00000438120		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372414	ENST00000372413		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372414	ENST00000372414		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000372414	ENST00000422171		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
5CDS-3UTR	ENST00000372414	ENST00000496447		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000422171	ENST00000359947		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000422171	ENST00000438120		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000422171	ENST00000372413		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000422171	ENST00000372414		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
In-frame	ENST00000422171	ENST00000422171		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
5CDS-3UTR	ENST00000422171	ENST00000496447		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
3UTR-3CDS	ENST00000496447	ENST00000359947		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
3UTR-3CDS	ENST00000496447	ENST00000438120		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
3UTR-3CDS	ENST00000496447	ENST00000372413		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
3UTR-3CDS	ENST00000496447	ENST00000372414		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
3UTR-3CDS	ENST00000496447	ENST00000422171		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
3UTR-3UTR	ENST00000496447	ENST00000496447		ChiTaRS3.1			BQ300560	PTPRF	chr1	44069674	+	PTPRF	chr1	44070631	-
intron-5UTR	ENST00000462159	ENST00000462159		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-3UTR	ENST00000462159	ENST00000287482		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-intron	ENST00000462159	ENST00000535161		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-5UTR	ENST00000287482	ENST00000462159		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-3UTR	ENST00000287482	ENST00000287482		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-intron	ENST00000287482	ENST00000535161		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-5UTR	ENST00000535161	ENST00000462159		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-3UTR	ENST00000535161	ENST00000287482		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-intron	ENST00000535161	ENST00000535161		ChiTaRS3.1			AL044680	SASS6	chr1	100549486	+	SASS6	chr1	100549448	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AW801200	IGHG1	chr14	106236712	-	IGHG1	chr14	106236163	+
intron-3CDS	ENST00000377795	ENST00000377795		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000377795	ENST00000353334		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000377795	ENST00000524315		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000377795	ENST00000009530		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000353334	ENST00000377795		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000353334	ENST00000353334		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000353334	ENST00000524315		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000353334	ENST00000009530		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000524315	ENST00000377795		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000524315	ENST00000353334		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000524315	ENST00000524315		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000524315	ENST00000009530		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000009530	ENST00000377795		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000009530	ENST00000353334		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000009530	ENST00000524315		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
intron-3CDS	ENST00000009530	ENST00000009530		ChiTaRS3.1			AW512420	CD74	chr5	149781493	+	CD74	chr5	149792295	-
5CDS-intron	ENST00000357668	ENST00000540363		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
5CDS-intron	ENST00000357668	ENST00000331597		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
5CDS-intron	ENST00000357668	ENST00000427714		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
5CDS-intron	ENST00000518721	ENST00000540363		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
5CDS-intron	ENST00000518721	ENST00000331597		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
5CDS-intron	ENST00000518721	ENST00000427714		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
intron-intron	ENST00000520625	ENST00000540363		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
intron-intron	ENST00000520625	ENST00000331597		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
intron-intron	ENST00000520625	ENST00000427714		ChiTaRS3.1			BE702520	ASAP1	chr8	131164982	-	P4HA3	chr11	73998187	+
3UTR-3UTR	ENST00000355485	ENST00000355485		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-3UTR	ENST00000355485	ENST00000369510		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-intron	ENST00000355485	ENST00000310260		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-intron	ENST00000355485	ENST00000369509		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-intron	ENST00000355485	ENST00000474344		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-3UTR	ENST00000369510	ENST00000355485		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-3UTR	ENST00000369510	ENST00000369510		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-intron	ENST00000369510	ENST00000310260		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-intron	ENST00000369510	ENST00000369509		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
3UTR-intron	ENST00000369510	ENST00000474344		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3UTR	ENST00000310260	ENST00000355485		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3UTR	ENST00000310260	ENST00000369510		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000310260	ENST00000310260		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000310260	ENST00000369509		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000310260	ENST00000474344		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3UTR	ENST00000369509	ENST00000355485		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3UTR	ENST00000369509	ENST00000369510		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000369509	ENST00000310260		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000369509	ENST00000369509		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000369509	ENST00000474344		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3UTR	ENST00000474344	ENST00000355485		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3UTR	ENST00000474344	ENST00000369510		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000474344	ENST00000310260		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000474344	ENST00000369509		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-intron	ENST00000474344	ENST00000474344		ChiTaRS3.1			CN478670	VANGL1	chr1	116236153	-	VANGL1	chr1	116235902	+
intron-3CDS	ENST00000300291	ENST00000300291		ChiTaRS3.1			DB481810	NUDT21	chr16	56465238	-	NUDT21	chr16	56481757	-
intron-intron	ENST00000454300	ENST00000524717		ChiTaRS3.1			AW889440	TANC1	chr2	160057518	+	MAML2	chr11	96021383	+
intron-intron	ENST00000263635	ENST00000524717		ChiTaRS3.1			AW889440	TANC1	chr2	160057518	+	MAML2	chr11	96021383	+
intron-intron	ENST00000263707	ENST00000316694		ChiTaRS3.1			BF356130	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000263707	ENST00000352886		ChiTaRS3.1			BF356130	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000263707	ENST00000539052		ChiTaRS3.1			BF356130	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000263707	ENST00000354098		ChiTaRS3.1			BF356130	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000378204	ENST00000378204		ChiTaRS3.1			BE077260	EXT1	chr8	119086717	+	EXT1	chr8	119086585	-
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			AY789120	BCR	chr22	23631881	+	ABL1	chr9	133729090	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			AY789120	BCR	chr22	23631881	+	ABL1	chr9	133729090	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			AY789120	BCR	chr22	23631881	+	ABL1	chr9	133729090	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			AY789120	BCR	chr22	23631881	+	ABL1	chr9	133729090	+
intron-intron	ENST00000345813	ENST00000345813		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000345813	ENST00000326804		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000345813	ENST00000424679		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-3UTR	ENST00000345813	ENST00000597818		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000326804	ENST00000345813		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000326804	ENST00000326804		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000326804	ENST00000424679		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-3UTR	ENST00000326804	ENST00000597818		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000424679	ENST00000345813		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000424679	ENST00000326804		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000424679	ENST00000424679		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-3UTR	ENST00000424679	ENST00000597818		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000597818	ENST00000345813		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000597818	ENST00000326804		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-intron	ENST00000597818	ENST00000424679		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-3UTR	ENST00000597818	ENST00000597818		ChiTaRS3.1			BF379670	ZNF274	chr19	58722745	-	ZNF274	chr19	58698325	+
intron-3CDS	ENST00000264382	ENST00000263642		ChiTaRS3.1			BF907120	SI	chr3	164723644	-	IFIH1	chr2	163128869	-
intron-intron	ENST00000264382	ENST00000421365		ChiTaRS3.1			BF907120	SI	chr3	164723644	-	IFIH1	chr2	163128869	-
intron-3CDS	ENST00000369146	ENST00000328194		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-3CDS	ENST00000369146	ENST00000530044		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-3CDS	ENST00000369146	ENST00000527700		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-intron	ENST00000369146	ENST00000526523		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-3CDS	ENST00000369145	ENST00000328194		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-3CDS	ENST00000369145	ENST00000530044		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-3CDS	ENST00000369145	ENST00000527700		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
intron-intron	ENST00000369145	ENST00000526523		ChiTaRS3.1			AA776600	SV2A	chr1	149875164	+	DENND5A	chr11	9166571	-
In-frame	ENST00000409469	ENST00000409469		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
Frame-shit	ENST00000409469	ENST00000602748		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
Frame-shit	ENST00000409469	ENST00000325222		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
In-frame	ENST00000602748	ENST00000409469		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
Frame-shit	ENST00000602748	ENST00000602748		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
Frame-shit	ENST00000602748	ENST00000325222		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
In-frame	ENST00000325222	ENST00000409469		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
Frame-shit	ENST00000325222	ENST00000602748		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
Frame-shit	ENST00000325222	ENST00000325222		ChiTaRS3.1			BM128230	CUL1	chr7	148496416	-	CUL1	chr7	148497664	+
intron-3UTR	ENST00000368321	ENST00000368321		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000368321	ENST00000368320		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000368321	ENST00000368319		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000368321	ENST00000482337		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000368320	ENST00000368321		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000368320	ENST00000368320		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000368320	ENST00000368319		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000368320	ENST00000482337		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000368319	ENST00000368321		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000368319	ENST00000368320		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000368319	ENST00000368319		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000368319	ENST00000482337		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000482337	ENST00000368321		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-3UTR	ENST00000482337	ENST00000368320		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000482337	ENST00000368319		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
intron-intron	ENST00000482337	ENST00000482337		ChiTaRS3.1			AL048100	KIAA0907	chr1	155883452	+	KIAA0907	chr1	155883378	-
5UTR-intron	ENST00000424459	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000424459	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000424459	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000424459	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000514387	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000514387	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000514387	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000514387	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000506184	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000506184	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000506184	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000506184	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000454432	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000454432	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000454432	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000454432	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000511209	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000511209	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000511209	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
5UTR-intron	ENST00000511209	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000264779	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000264779	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000264779	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000264779	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000538707	ENST00000370313		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000538707	ENST00000370316		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000538707	ENST00000466885		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000538707	ENST00000370307		ChiTaRS3.1			AW375850	GPBP1	chr5	56472188	-	NKAIN4	chr20	61874023	-
intron-intron	ENST00000370375	ENST00000372978		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000494547		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000456846		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000372982		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000472818		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-3UTR	ENST00000370375	ENST00000372977		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000482926		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000465926		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370375	ENST00000482432		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000372978		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000494547		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000456846		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000372982		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000472818		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-3UTR	ENST00000370373	ENST00000372977		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000482926		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000465926		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
intron-intron	ENST00000370373	ENST00000482432		ChiTaRS3.1			BF758200	C1orf146	chr1	92704594	+	TAF8	chr6	42048405	+
3UTR-3UTR	ENST00000443503	ENST00000443503		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
3UTR-3UTR	ENST00000443503	ENST00000273179		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
3UTR-intron	ENST00000443503	ENST00000310189		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
3UTR-3UTR	ENST00000273179	ENST00000443503		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
3UTR-3UTR	ENST00000273179	ENST00000273179		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
3UTR-intron	ENST00000273179	ENST00000310189		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
intron-3UTR	ENST00000310189	ENST00000443503		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
intron-3UTR	ENST00000310189	ENST00000273179		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
intron-intron	ENST00000310189	ENST00000310189		ChiTaRS3.1			AI740880	CTDSPL	chr3	38025617	-	CTDSPL	chr3	38025035	+
intron-3CDS	ENST00000314675	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000314675	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000314675	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000314675	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000314675	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000314675	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000314675	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000314675	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374223	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374223	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374223	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374223	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374223	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374223	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374223	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374223	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000357089	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000357089	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000357089	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000357089	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000357089	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000357089	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000357089	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000357089	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374221	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374221	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374221	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374221	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374221	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374221	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374221	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374221	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374217	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374217	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374217	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374217	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374217	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374217	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374217	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374217	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374222	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374222	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374222	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374222	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374222	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000374222	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374222	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000374222	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000535108	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000535108	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000535108	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000535108	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000535108	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000535108	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000535108	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000535108	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000436301	ENST00000314675		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000436301	ENST00000374223		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000436301	ENST00000357089		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000436301	ENST00000374221		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000436301	ENST00000374217		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-3CDS	ENST00000436301	ENST00000374222		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000436301	ENST00000535108		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000436301	ENST00000436301		ChiTaRS3.1			BQ325430	UBXN11	chr1	26611419	+	UBXN11	chr1	26609208	+
intron-intron	ENST00000537330	ENST00000537330		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000570891		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000306801		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000544334		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000575542		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000537330		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000570891		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000306801		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000544334		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000575542		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000537330		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000570891		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000306801		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000544334		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000575542		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000537330		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000570891		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000306801		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000544334		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000575542		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000537330		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000570891		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000306801		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000544334		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000575542		ChiTaRS3.1			AW859900	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
Frame-shit	ENST00000352645	ENST00000352645		ChiTaRS3.1			CB409170	ZC3H7B	chr22	41744149	+	ZC3H7B	chr22	41738577	+
Frame-shit	ENST00000352645	ENST00000351589		ChiTaRS3.1			CB409170	ZC3H7B	chr22	41744149	+	ZC3H7B	chr22	41738577	+
Frame-shit	ENST00000351589	ENST00000352645		ChiTaRS3.1			CB409170	ZC3H7B	chr22	41744149	+	ZC3H7B	chr22	41738577	+
Frame-shit	ENST00000351589	ENST00000351589		ChiTaRS3.1			CB409170	ZC3H7B	chr22	41744149	+	ZC3H7B	chr22	41738577	+
intron-intron	ENST00000219689	ENST00000315717		ChiTaRS3.1			AW885590	USP31	chr16	23089868	-	ARPC2	chr2	219118097	+
intron-intron	ENST00000219689	ENST00000295685		ChiTaRS3.1			AW885590	USP31	chr16	23089868	-	ARPC2	chr2	219118097	+
intron-intron	ENST00000219689	ENST00000477992		ChiTaRS3.1			AW885590	USP31	chr16	23089868	-	ARPC2	chr2	219118097	+
intron-intron	ENST00000567975	ENST00000315717		ChiTaRS3.1			AW885590	USP31	chr16	23089868	-	ARPC2	chr2	219118097	+
intron-intron	ENST00000567975	ENST00000295685		ChiTaRS3.1			AW885590	USP31	chr16	23089868	-	ARPC2	chr2	219118097	+
intron-intron	ENST00000567975	ENST00000477992		ChiTaRS3.1			AW885590	USP31	chr16	23089868	-	ARPC2	chr2	219118097	+
intron-intron	ENST00000434271	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000434271	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000434271	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000434271	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000353047	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000353047	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000353047	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000353047	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000530640	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000530640	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000530640	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000530640	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000531089	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000531089	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000531089	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000531089	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000453527	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000453527	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000453527	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000453527	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000415599	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000415599	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000415599	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000415599	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000345125	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000345125	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000345125	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000345125	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000533455	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000533455	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000533455	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000533455	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000534510	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000534510	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000534510	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000534510	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000525076	ENST00000428314		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000525076	ENST00000389524		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000525076	ENST00000409816		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
intron-intron	ENST00000525076	ENST00000409090		ChiTaRS3.1			AI940520	CTSB	chr8	11702214	-	MYO7B	chr2	128321345	-
5CDS-intron	ENST00000415083	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
5CDS-intron	ENST00000542420	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
5CDS-intron	ENST00000542743	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
5CDS-intron	ENST00000539849	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
5CDS-intron	ENST00000269137	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
5CDS-intron	ENST00000545952	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
intron-intron	ENST00000585241	ENST00000509958		ChiTaRS3.1			AF257500	SS18	chr18	23612363	-	SSX6	chrX	47976392	+
intron-intron	ENST00000367704	ENST00000303635		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367704	ENST00000439411		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367704	ENST00000476163		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367704	ENST00000557126		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367704	ENST00000473578		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367704	ENST00000467404		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367704	ENST00000476864		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000303635		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000439411		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000476163		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000557126		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000473578		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000467404		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000432989	ENST00000476864		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000303635		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000439411		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000476163		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000557126		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000473578		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000467404		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000427304	ENST00000476864		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000303635		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000439411		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000476163		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000557126		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000473578		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000467404		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367702	ENST00000476864		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000303635		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000439411		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000476163		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000557126		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000473578		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000467404		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000367701	ENST00000476864		ChiTaRS3.1			EL582680	ZBTB37	chr1	173844307	+	CAMTA1	chr1	7553463	-
3UTR-intron	ENST00000422508	ENST00000395290		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000358597		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000395292		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000310513		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000361904		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000539455		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000531165		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000422508	ENST00000532048		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000395290		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000358597		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000395292		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000310513		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000361904		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000539455		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000531165		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000437994	ENST00000532048		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000395290		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000358597		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000395292		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000310513		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000361904		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000539455		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000531165		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
3UTR-intron	ENST00000287097	ENST00000532048		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000395290		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000358597		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000395292		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000310513		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000361904		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000539455		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000531165		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-intron	ENST00000474094	ENST00000532048		ChiTaRS3.1			BE090520	CD109	chr6	74537436	-	CELF1	chr11	47566169	-
intron-3UTR	ENST00000261965	ENST00000313949		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000371098		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000261965	ENST00000371075		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000261965	ENST00000371100		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000371099		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000371102		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000261965	ENST00000464624		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000306120		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000371095		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000371085		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000354359		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000265620		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000306090		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000261965	ENST00000371081		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000375669	ENST00000313949		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000371098		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000375669	ENST00000371075		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000375669	ENST00000371100		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000371099		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000371102		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000375669	ENST00000464624		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000306120		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000371095		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000371085		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000354359		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000265620		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000306090		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000375669	ENST00000371081		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000462580	ENST00000313949		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000371098		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000462580	ENST00000371075		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000462580	ENST00000371100		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000371099		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000371102		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-3UTR	ENST00000462580	ENST00000464624		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000306120		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000371095		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000371085		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000354359		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000265620		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000306090		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000462580	ENST00000371081		ChiTaRS3.1			BF934290	TUBGCP3	chr13	113200178	+	GNAS	chr20	57485434	-
intron-intron	ENST00000409185	ENST00000181796		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000378470		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000468747		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000378467		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000378465		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000378458		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000478076		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000378462		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000496330		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000479731		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000409185	ENST00000471815		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000181796		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000378470		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000468747		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000378467		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000378465		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000378458		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000478076		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000378462		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000496330		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000479731		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
intron-intron	ENST00000389915	ENST00000471815		ChiTaRS3.1			BF902150	FAM168B	chr2	131809662	+	FAM107B	chr10	14613016	-
5CDS-3UTR	ENST00000246533	ENST00000246533		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000246533	ENST00000589146		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000246533	ENST00000587718		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000246533	ENST00000590874		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000246533	ENST00000588815		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000246533	ENST00000588780		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-3UTR	ENST00000589146	ENST00000246533		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-intron	ENST00000589146	ENST00000589146		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-3UTR	ENST00000589146	ENST00000587718		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-intron	ENST00000589146	ENST00000590874		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-3UTR	ENST00000589146	ENST00000588815		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-intron	ENST00000589146	ENST00000588780		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000587718	ENST00000246533		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000587718	ENST00000589146		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000587718	ENST00000587718		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000587718	ENST00000590874		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000587718	ENST00000588815		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000587718	ENST00000588780		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000590874	ENST00000246533		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000590874	ENST00000589146		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000590874	ENST00000587718		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000590874	ENST00000590874		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000590874	ENST00000588815		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000590874	ENST00000588780		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000588815	ENST00000246533		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000588815	ENST00000589146		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000588815	ENST00000587718		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000588815	ENST00000590874		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000588815	ENST00000588815		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000588815	ENST00000588780		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000588780	ENST00000246533		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000588780	ENST00000589146		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000588780	ENST00000587718		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000588780	ENST00000590874		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-3UTR	ENST00000588780	ENST00000588815		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
5CDS-intron	ENST00000588780	ENST00000588780		ChiTaRS3.1			AW366590	CAPNS1	chr19	36636912	-	CAPNS1	chr19	36641152	+
intron-intron	ENST00000368315	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368315	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368315	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368315	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313695	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313695	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313695	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313695	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000361247	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000361247	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000361247	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000361247	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368316	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368316	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368316	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000368316	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000462460	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000462460	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000462460	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000462460	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000477754	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000477754	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000477754	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000477754	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313667	ENST00000310653		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313667	ENST00000336083		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313667	ENST00000536566		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
intron-intron	ENST00000313667	ENST00000541588		ChiTaRS3.1			BM985170	ARHGEF2	chr1	155918181	+	RAB6A	chr11	73472598	-
3UTR-intron	ENST00000260641	ENST00000251582		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
3UTR-intron	ENST00000260641	ENST00000274609		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
intron-intron	ENST00000476840	ENST00000251582		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
intron-intron	ENST00000476840	ENST00000274609		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
intron-intron	ENST00000542850	ENST00000251582		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
intron-intron	ENST00000542850	ENST00000274609		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
3UTR-intron	ENST00000377982	ENST00000251582		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
3UTR-intron	ENST00000377982	ENST00000274609		ChiTaRS3.1			H14770	ACTR2	chr2	65496299	+	ADAMTS2	chr5	178747210	+
intron-intron	ENST00000221418	ENST00000291670		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000221418	ENST00000498355		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000221418	ENST00000397748		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000221418	ENST00000359679		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000221418	ENST00000355384		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000221418	ENST00000397743		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000221418	ENST00000397746		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000291670		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000498355		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000397748		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000359679		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000355384		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000397743		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000597805	ENST00000397746		ChiTaRS3.1			AI040520	ECH1	chr19	39306170	+	FTCD	chr21	47569203	+
intron-intron	ENST00000378076	ENST00000378076		ChiTaRS3.1			AW794080	ITGA8	chr10	15756123	+	ITGA8	chr10	15755919	+
intron-intron	ENST00000378076	ENST00000477064		ChiTaRS3.1			AW794080	ITGA8	chr10	15756123	+	ITGA8	chr10	15755919	+
intron-intron	ENST00000477064	ENST00000378076		ChiTaRS3.1			AW794080	ITGA8	chr10	15756123	+	ITGA8	chr10	15755919	+
intron-intron	ENST00000477064	ENST00000477064		ChiTaRS3.1			AW794080	ITGA8	chr10	15756123	+	ITGA8	chr10	15755919	+
intron-3UTR	ENST00000334983	ENST00000401070		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000334983	ENST00000373059		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000334983	ENST00000401071		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000334983	ENST00000356545		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000334983	ENST00000401069		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-intron	ENST00000334983	ENST00000401068		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000349718	ENST00000401070		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000349718	ENST00000373059		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000349718	ENST00000401071		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000349718	ENST00000356545		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-3UTR	ENST00000349718	ENST00000401069		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-intron	ENST00000349718	ENST00000401068		ChiTaRS3.1			BQ300150	CMTM7	chr3	32493586	+	RSPO1	chr1	38077349	+
intron-intron	ENST00000534307	ENST00000534307		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
intron-intron	ENST00000534307	ENST00000528302		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
intron-intron	ENST00000534307	ENST00000322535		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
5CDS-intron	ENST00000528302	ENST00000534307		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
5CDS-intron	ENST00000528302	ENST00000528302		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
5CDS-intron	ENST00000528302	ENST00000322535		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
5CDS-intron	ENST00000322535	ENST00000534307		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
5CDS-intron	ENST00000322535	ENST00000528302		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
5CDS-intron	ENST00000322535	ENST00000322535		ChiTaRS3.1			BF817030	SF3B2	chr11	65835718	+	SF3B2	chr11	65827020	+
3UTR-intron	ENST00000375147	ENST00000463284		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000375147	ENST00000358435		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000375147	ENST00000405021		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000375147	ENST00000372879		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000491445	ENST00000463284		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000491445	ENST00000358435		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000491445	ENST00000405021		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
3UTR-intron	ENST00000491445	ENST00000372879		ChiTaRS3.1			AW877510	NCBP1	chr9	100435853	+	TOMM7	chr7	22852892	-
intron-intron	ENST00000361377	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000361377	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000396954	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000450852	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000510818	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000508922	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000582677	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000584946	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000485760		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000371236		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000371234		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000420954		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000439789		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000414851		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000371231		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-intron	ENST00000527216	ENST00000371230		ChiTaRS3.1			CF529200	MOCS2	chr5	52394076	+	DAB1	chr1	57712226	+
intron-3CDS	ENST00000393445	ENST00000393445		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-3CDS	ENST00000393445	ENST00000258428		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-5UTR	ENST00000393445	ENST00000465835		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-3CDS	ENST00000258428	ENST00000393445		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-3CDS	ENST00000258428	ENST00000258428		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-5UTR	ENST00000258428	ENST00000465835		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-3CDS	ENST00000465835	ENST00000393445		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-3CDS	ENST00000465835	ENST00000258428		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
intron-5UTR	ENST00000465835	ENST00000465835		ChiTaRS3.1			BU675470	REV1	chr2	100022849	-	REV1	chr2	100022393	+
5CDS-intron	ENST00000263187	ENST00000513488		ChiTaRS3.1			BI024400	MSH4	chr1	76280750	-	ZNF652	chr17	47437597	+
5CDS-intron	ENST00000263187	ENST00000362063		ChiTaRS3.1			BI024400	MSH4	chr1	76280750	-	ZNF652	chr17	47437597	+
5CDS-intron	ENST00000263187	ENST00000430262		ChiTaRS3.1			BI024400	MSH4	chr1	76280750	-	ZNF652	chr17	47437597	+
3UTR-intron	ENST00000293404	ENST00000395282		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000395283		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000340417		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000442461		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000446851		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000510557		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000506560		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000505397		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
3UTR-intron	ENST00000293404	ENST00000505905		ChiTaRS3.1			R97030	NAGS	chr17	42086332	-	LIN54	chr4	83869103	-
Frame-shit	ENST00000409613	ENST00000368679		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
Frame-shit	ENST00000409613	ENST00000368676		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
5CDS-intron	ENST00000409613	ENST00000467145		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-3CDS	ENST00000264059	ENST00000368679		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-3CDS	ENST00000264059	ENST00000368676		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-intron	ENST00000264059	ENST00000467145		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-3CDS	ENST00000409708	ENST00000368679		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-3CDS	ENST00000409708	ENST00000368676		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-intron	ENST00000409708	ENST00000467145		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-3CDS	ENST00000410095	ENST00000368679		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-3CDS	ENST00000410095	ENST00000368676		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
3UTR-intron	ENST00000410095	ENST00000467145		ChiTaRS3.1			BF995070	EFHD1	chr2	233547051	-	ADAM12	chr10	127760155	-
intron-intron	ENST00000371497	ENST00000412849		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000371497	ENST00000401392		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000371497	ENST00000264159		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000371497	ENST00000536680		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000603338	ENST00000412849		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000603338	ENST00000401392		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000603338	ENST00000264159		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000603338	ENST00000536680		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000329613	ENST00000412849		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000329613	ENST00000401392		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000329613	ENST00000264159		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000329613	ENST00000536680		ChiTaRS3.1			BG994430	TSHZ2	chr20	52024489	-	ZRANB3	chr2	136340433	-
intron-intron	ENST00000370328	ENST00000580170		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370328	ENST00000332175		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370328	ENST00000400060		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370328	ENST00000400053		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370328	ENST00000444013		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370328	ENST00000578571		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370325	ENST00000580170		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370325	ENST00000332175		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370325	ENST00000400060		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370325	ENST00000400053		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370325	ENST00000444013		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000370325	ENST00000578571		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000393914	ENST00000580170		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000393914	ENST00000332175		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000393914	ENST00000400060		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000393914	ENST00000400053		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000393914	ENST00000444013		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000393914	ENST00000578571		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000483564	ENST00000580170		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000483564	ENST00000332175		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000483564	ENST00000400060		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000483564	ENST00000400053		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000483564	ENST00000444013		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
intron-intron	ENST00000483564	ENST00000578571		ChiTaRS3.1			BG011660	GABRE	chrX	151139461	+	PTPRM	chr18	7582987	-
3UTR-intron	ENST00000444836	ENST00000513200		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000444836	ENST00000427991		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000444836	ENST00000312498		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000444836	ENST00000329378		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000235329	ENST00000513200		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000235329	ENST00000427991		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000235329	ENST00000312498		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
3UTR-intron	ENST00000235329	ENST00000329378		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
intron-intron	ENST00000497302	ENST00000513200		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
intron-intron	ENST00000497302	ENST00000427991		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
intron-intron	ENST00000497302	ENST00000312498		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
intron-intron	ENST00000497302	ENST00000329378		ChiTaRS3.1			BE171990	MFN2	chr1	12072285	+	KIAA0825	chr5	93903539	-
intron-intron	ENST00000397002	ENST00000397002		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000397002	ENST00000561028		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000397002	ENST00000396997		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000397002	ENST00000560550		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000397002	ENST00000396995		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000561028	ENST00000397002		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000561028	ENST00000561028		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000561028	ENST00000396997		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000561028	ENST00000560550		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000561028	ENST00000396995		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396997	ENST00000397002		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396997	ENST00000561028		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396997	ENST00000396997		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396997	ENST00000560550		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396997	ENST00000396995		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000560550	ENST00000397002		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000560550	ENST00000561028		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000560550	ENST00000396997		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000560550	ENST00000560550		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000560550	ENST00000396995		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396995	ENST00000397002		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396995	ENST00000561028		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396995	ENST00000396997		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396995	ENST00000560550		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000396995	ENST00000396995		ChiTaRS3.1			AA493380	NRL	chr14	24571728	-	NRL	chr14	24572645	-
intron-intron	ENST00000369911	ENST00000394287		ChiTaRS3.1			BE818200	DNAJC5	chr20	62565964	-	MED1	chr17	37563951	-
intron-intron	ENST00000369911	ENST00000300651		ChiTaRS3.1			BE818200	DNAJC5	chr20	62565964	-	MED1	chr17	37563951	-
3UTR-intron	ENST00000360864	ENST00000394287		ChiTaRS3.1			BE818200	DNAJC5	chr20	62565964	-	MED1	chr17	37563951	-
3UTR-intron	ENST00000360864	ENST00000300651		ChiTaRS3.1			BE818200	DNAJC5	chr20	62565964	-	MED1	chr17	37563951	-
3UTR-3CDS	ENST00000375664	ENST00000299138		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
3UTR-intron	ENST00000375664	ENST00000568642		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-3CDS	ENST00000375646	ENST00000299138		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-intron	ENST00000375646	ENST00000568642		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
3UTR-3CDS	ENST00000347934	ENST00000299138		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
3UTR-intron	ENST00000347934	ENST00000568642		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
3UTR-3CDS	ENST00000354911	ENST00000299138		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
3UTR-intron	ENST00000354911	ENST00000568642		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-3CDS	ENST00000428935	ENST00000299138		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-intron	ENST00000428935	ENST00000568642		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-3CDS	ENST00000532233	ENST00000299138		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-intron	ENST00000532233	ENST00000568642		ChiTaRS3.1			AA435640	WAC	chr10	28909410	-	VPS35	chr16	46694482	+
intron-intron	ENST00000426838	ENST00000525141		ChiTaRS3.1			AW866770	SETBP1	chr18	42307685	+	SMCO4	chr11	93214062	+
intron-intron	ENST00000426838	ENST00000298966		ChiTaRS3.1			AW866770	SETBP1	chr18	42307685	+	SMCO4	chr11	93214062	+
intron-intron	ENST00000426838	ENST00000527149		ChiTaRS3.1			AW866770	SETBP1	chr18	42307685	+	SMCO4	chr11	93214062	+
intron-intron	ENST00000282030	ENST00000525141		ChiTaRS3.1			AW866770	SETBP1	chr18	42307685	+	SMCO4	chr11	93214062	+
intron-intron	ENST00000282030	ENST00000298966		ChiTaRS3.1			AW866770	SETBP1	chr18	42307685	+	SMCO4	chr11	93214062	+
intron-intron	ENST00000282030	ENST00000527149		ChiTaRS3.1			AW866770	SETBP1	chr18	42307685	+	SMCO4	chr11	93214062	+
3UTR-intron	ENST00000394329	ENST00000371927		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
3UTR-intron	ENST00000394329	ENST00000371926		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
3UTR-intron	ENST00000394329	ENST00000461650		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
3UTR-intron	ENST00000394329	ENST00000371924		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
3UTR-intron	ENST00000394329	ENST00000371922		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
intron-intron	ENST00000335110	ENST00000371927		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
intron-intron	ENST00000335110	ENST00000371926		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
intron-intron	ENST00000335110	ENST00000461650		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
intron-intron	ENST00000335110	ENST00000371924		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
intron-intron	ENST00000335110	ENST00000371922		ChiTaRS3.1			BP231880	FAT4	chr4	126413978	+	STAMBPL1	chr10	90712529	-
intron-3CDS	ENST00000423994	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000423994	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000423994	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000429770	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000429770	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000435965	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000435965	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000266039	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000266039	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000395083	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000395083	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000360963	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000360963	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000424201	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000424201	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000479441	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000479441	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000423994		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000429770		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000435965		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000266039		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000395083		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000360963		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000424201		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-3CDS	ENST00000487413	ENST00000479441		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000487413	ENST00000487413		ChiTaRS3.1			AI655740	CACNA2D2	chr3	50403954	-	CACNA2D2	chr3	50405084	-
intron-intron	ENST00000263202	ENST00000376460		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000263202	ENST00000339416		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000263202	ENST00000448493		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000263202	ENST00000442173		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000263202	ENST00000461998		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000360834	ENST00000376460		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000360834	ENST00000339416		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000360834	ENST00000448493		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000360834	ENST00000442173		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000360834	ENST00000461998		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000399523	ENST00000376460		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000399523	ENST00000339416		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000399523	ENST00000448493		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000399523	ENST00000442173		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000399523	ENST00000461998		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000484101	ENST00000376460		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000484101	ENST00000339416		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000484101	ENST00000448493		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000484101	ENST00000442173		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
intron-intron	ENST00000484101	ENST00000461998		ChiTaRS3.1			M62000	UFD1L	chr22	19448039	-	DOCK9	chr13	99597706	-
3UTR-3UTR	ENST00000372398	ENST00000372398		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-intron	ENST00000372398	ENST00000493042		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-3UTR	ENST00000372398	ENST00000458469		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-3UTR	ENST00000493042	ENST00000372398		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-intron	ENST00000493042	ENST00000493042		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-3UTR	ENST00000493042	ENST00000458469		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-3UTR	ENST00000458469	ENST00000372398		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-intron	ENST00000458469	ENST00000493042		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-3UTR	ENST00000458469	ENST00000458469		ChiTaRS3.1			BG472770	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-intron	ENST00000409792	ENST00000409792		ChiTaRS3.1			BE153980	SETD2	chr3	47187749	-	SETD2	chr3	47195673	-
intron-intron	ENST00000409792	ENST00000492397		ChiTaRS3.1			BE153980	SETD2	chr3	47187749	-	SETD2	chr3	47195673	-
intron-intron	ENST00000492397	ENST00000409792		ChiTaRS3.1			BE153980	SETD2	chr3	47187749	-	SETD2	chr3	47195673	-
intron-intron	ENST00000492397	ENST00000492397		ChiTaRS3.1			BE153980	SETD2	chr3	47187749	-	SETD2	chr3	47195673	-
intron-intron	ENST00000466152	ENST00000466152		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000466152	ENST00000371588		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000466152	ENST00000371582		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000466152	ENST00000371583		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371588	ENST00000466152		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371588	ENST00000371588		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371588	ENST00000371582		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371588	ENST00000371583		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371582	ENST00000466152		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371582	ENST00000371588		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371582	ENST00000371582		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371582	ENST00000371583		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371583	ENST00000466152		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371583	ENST00000371588		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371583	ENST00000371582		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
intron-intron	ENST00000371583	ENST00000371583		ChiTaRS3.1			BE772880	DPM1	chr20	49564864	-	DPM1	chr11	121961774	-
In-frame	ENST00000383440	ENST00000383440		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
In-frame	ENST00000383440	ENST00000262126		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
5CDS-3UTR	ENST00000383440	ENST00000540578		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
5CDS-3UTR	ENST00000383440	ENST00000400020		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
In-frame	ENST00000262126	ENST00000383440		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
In-frame	ENST00000262126	ENST00000262126		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
5CDS-3UTR	ENST00000262126	ENST00000540578		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
5CDS-3UTR	ENST00000262126	ENST00000400020		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
3UTR-3CDS	ENST00000540578	ENST00000383440		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
3UTR-3CDS	ENST00000540578	ENST00000262126		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
3UTR-3UTR	ENST00000540578	ENST00000540578		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
3UTR-3UTR	ENST00000540578	ENST00000400020		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
In-frame	ENST00000400020	ENST00000383440		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
In-frame	ENST00000400020	ENST00000262126		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
5CDS-3UTR	ENST00000400020	ENST00000540578		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
5CDS-3UTR	ENST00000400020	ENST00000400020		ChiTaRS3.1			BF747860	ANKRD12	chr18	9208670	-	ANKRD12	chr18	9208765	+
intron-3CDS	ENST00000392951	ENST00000245441		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-3CDS	ENST00000392951	ENST00000389868		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-3CDS	ENST00000392951	ENST00000530997		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-3CDS	ENST00000392951	ENST00000382043		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-3CDS	ENST00000392951	ENST00000382041		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-3CDS	ENST00000392951	ENST00000324330		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-3CDS	ENST00000392951	ENST00000453196		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
intron-intron	ENST00000392951	ENST00000486200		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000245441		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000389868		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000530997		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000382043		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000382041		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000324330		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000530649	ENST00000453196		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-intron	ENST00000530649	ENST00000486200		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000245441		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000389868		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000530997		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000382043		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000382041		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000324330		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-3CDS	ENST00000532870	ENST00000453196		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-intron	ENST00000532870	ENST00000486200		ChiTaRS3.1			W49800	TAGLN	chr11	117075401	-	NIN	chr14	51237151	+
3UTR-intron	ENST00000344338	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000344338	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000368955	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000368955	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000330163	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000330163	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000338354	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000338354	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000368956	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000368956	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000368909	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000368909	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000359586	ENST00000354725		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
3UTR-intron	ENST00000359586	ENST00000467238		ChiTaRS3.1			BF064110	DMBT1	chr10	124402956	-	SND1	chr7	127654106	+
In-frame	ENST00000457346	ENST00000457346		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000457346	ENST00000309263		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000457346	ENST00000450649		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000457346	ENST00000520467		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
5CDS-intron	ENST00000457346	ENST00000534295		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000309263	ENST00000457346		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000309263	ENST00000309263		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000309263	ENST00000450649		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000309263	ENST00000520467		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
5CDS-intron	ENST00000309263	ENST00000534295		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000450649	ENST00000457346		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000450649	ENST00000309263		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000450649	ENST00000450649		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000450649	ENST00000520467		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
5CDS-intron	ENST00000450649	ENST00000534295		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000520467	ENST00000457346		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000520467	ENST00000309263		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000520467	ENST00000450649		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
In-frame	ENST00000520467	ENST00000520467		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
5CDS-intron	ENST00000520467	ENST00000534295		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
intron-3CDS	ENST00000534295	ENST00000457346		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
intron-3CDS	ENST00000534295	ENST00000309263		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
intron-3CDS	ENST00000534295	ENST00000450649		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
intron-3CDS	ENST00000534295	ENST00000520467		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
intron-intron	ENST00000534295	ENST00000534295		ChiTaRS3.1			AA557990	SCUBE2	chr11	9090917	-	SCUBE2	chr11	9088267	+
intron-intron	ENST00000344157	ENST00000315870		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000344157	ENST00000339121		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000344157	ENST00000445699		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000344157	ENST00000431467		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000355665	ENST00000315870		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000355665	ENST00000339121		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000355665	ENST00000445699		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000355665	ENST00000431467		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000579690	ENST00000315870		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000579690	ENST00000339121		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000579690	ENST00000445699		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000579690	ENST00000431467		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000552105	ENST00000315870		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000552105	ENST00000339121		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000552105	ENST00000445699		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000552105	ENST00000431467		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000550485	ENST00000315870		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000550485	ENST00000339121		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000550485	ENST00000445699		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000550485	ENST00000431467		ChiTaRS3.1			DW451070	YTHDC1	chr4	19863	+	ING3	chr7	120590979	-
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW861100	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW861100	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW861100	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW861100	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000368346	ENST00000252050		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000368346	ENST00000354495		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000368346	ENST00000372647		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000368346	ENST00000502937		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000392403	ENST00000252050		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000392403	ENST00000354495		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000392403	ENST00000372647		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000392403	ENST00000502937		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000548830	ENST00000252050		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000548830	ENST00000354495		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000548830	ENST00000372647		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000548830	ENST00000502937		ChiTaRS3.1			BF334880	ASH1L	chr1	155327202	+	CUL9	chr6	43187904	+
intron-intron	ENST00000380672	ENST00000233813		ChiTaRS3.1			AW296600	BNC2	chr9	16454332	+	IGFBP5	chr2	217548094	+
intron-intron	ENST00000380667	ENST00000233813		ChiTaRS3.1			AW296600	BNC2	chr9	16454332	+	IGFBP5	chr2	217548094	+
intron-intron	ENST00000545497	ENST00000233813		ChiTaRS3.1			AW296600	BNC2	chr9	16454332	+	IGFBP5	chr2	217548094	+
intron-intron	ENST00000380666	ENST00000233813		ChiTaRS3.1			AW296600	BNC2	chr9	16454332	+	IGFBP5	chr2	217548094	+
intron-intron	ENST00000471301	ENST00000233813		ChiTaRS3.1			AW296600	BNC2	chr9	16454332	+	IGFBP5	chr2	217548094	+
intron-intron	ENST00000538303	ENST00000354891		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000538303	ENST00000322350		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000538303	ENST00000336740		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000538303	ENST00000397202		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000538303	ENST00000397210		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000538303	ENST00000506135		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000538303	ENST00000514476		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000354891		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000322350		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000336740		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000397202		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000397210		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000506135		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000379343	ENST00000514476		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000354891		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000322350		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000336740		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000397202		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000397210		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000506135		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000357055	ENST00000514476		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000354891		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000322350		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000336740		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000397202		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000397210		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000506135		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
intron-intron	ENST00000435660	ENST00000514476		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000354891		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000322350		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000336740		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000397202		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000397210		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000506135		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000282587	ENST00000514476		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000354891		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000322350		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000336740		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000397202		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000397210		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000506135		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-intron	ENST00000406369	ENST00000514476		ChiTaRS3.1			BU742230	SLC30A6	chr2	32448677	-	EGFLAM	chr5	38407615	-
3UTR-3UTR	ENST00000450849	ENST00000450849		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
3UTR-intron	ENST00000450849	ENST00000301260		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
3UTR-intron	ENST00000450849	ENST00000595916		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
3UTR-intron	ENST00000450849	ENST00000398448		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
3UTR-intron	ENST00000450849	ENST00000600960		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-3UTR	ENST00000301260	ENST00000450849		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000301260	ENST00000301260		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000301260	ENST00000595916		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000301260	ENST00000398448		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000301260	ENST00000600960		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-3UTR	ENST00000595916	ENST00000450849		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000595916	ENST00000301260		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000595916	ENST00000595916		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000595916	ENST00000398448		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000595916	ENST00000600960		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-3UTR	ENST00000398448	ENST00000450849		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000398448	ENST00000301260		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000398448	ENST00000595916		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000398448	ENST00000398448		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000398448	ENST00000600960		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-3UTR	ENST00000600960	ENST00000450849		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000600960	ENST00000301260		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000600960	ENST00000595916		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000600960	ENST00000398448		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000600960	ENST00000600960		ChiTaRS3.1			BF528840	ATCAY	chr19	3927268	-	ATCAY	chr19	3927402	+
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			AI681390	BOLA2	chr16	29882888	+	BOLA2	chr16	29910594	-
intron-intron	ENST00000369144	ENST00000256958		ChiTaRS3.1			AI207430	EIF3A	chr10	120801566	-	SLCO1B1	chr12	21294366	+
intron-intron	ENST00000541549	ENST00000256958		ChiTaRS3.1			AI207430	EIF3A	chr10	120801566	-	SLCO1B1	chr12	21294366	+
intron-3CDS	ENST00000262193	ENST00000424459		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000262193	ENST00000514387		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000262193	ENST00000506184		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000262193	ENST00000454432		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000262193	ENST00000511209		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000262193	ENST00000264779		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000262193	ENST00000538707		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000424459		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000514387		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000506184		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000454432		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000511209		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000264779		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-3CDS	ENST00000462957	ENST00000538707		ChiTaRS3.1			BG272210	PSMB1	chr6	170844437	+	GPBP1	chr5	56545371	+
intron-intron	ENST00000537330	ENST00000537330		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-intron	ENST00000537330	ENST00000570891		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-3UTR	ENST00000537330	ENST00000306801		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-3UTR	ENST00000537330	ENST00000544334		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-3UTR	ENST00000537330	ENST00000575542		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-intron	ENST00000570891	ENST00000537330		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-intron	ENST00000570891	ENST00000570891		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-3UTR	ENST00000570891	ENST00000306801		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-3UTR	ENST00000570891	ENST00000544334		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-3UTR	ENST00000570891	ENST00000575542		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-intron	ENST00000306801	ENST00000537330		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-intron	ENST00000306801	ENST00000570891		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000306801	ENST00000306801		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000306801	ENST00000544334		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000306801	ENST00000575542		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-intron	ENST00000544334	ENST00000537330		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-intron	ENST00000544334	ENST00000570891		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000544334	ENST00000306801		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000544334	ENST00000544334		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000544334	ENST00000575542		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-intron	ENST00000575542	ENST00000537330		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-intron	ENST00000575542	ENST00000570891		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000575542	ENST00000306801		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000575542	ENST00000544334		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
3UTR-3UTR	ENST00000575542	ENST00000575542		ChiTaRS3.1			AW500290	RPTOR	chr17	78938683	-	RPTOR	chr17	78938838	+
intron-intron	ENST00000409907	ENST00000427836		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000409907	ENST00000389247		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000409907	ENST00000457206		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000309507	ENST00000427836		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000309507	ENST00000389247		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000309507	ENST00000457206		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000431676	ENST00000427836		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000431676	ENST00000389247		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000431676	ENST00000457206		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000465621	ENST00000427836		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000465621	ENST00000389247		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
intron-intron	ENST00000465621	ENST00000457206		ChiTaRS3.1			BF944750	IQCA1	chr2	237349359	-	PLEKHM3	chr2	208728111	+
Frame-shit	ENST00000331434	ENST00000331434		ChiTaRS3.1			AI340260	C8orf33	chr8	146278014	-	C8orf33	chr8	146279457	-
intron-intron	ENST00000506722	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000506722	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000506722	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000506722	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000506722	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000394537	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000394537	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000394537	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000394537	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000394537	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000357077	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000357077	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000357077	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000357077	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000357077	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000264366	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000264366	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000264366	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000264366	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000264366	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000509550	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000509550	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000509550	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000509550	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000509550	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000510275	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000510275	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000510275	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000510275	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000510275	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000504887	ENST00000537532		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000504887	ENST00000539644		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000504887	ENST00000392404		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000504887	ENST00000538932		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-3UTR	ENST00000504887	ENST00000337815		ChiTaRS3.1			BF218170	ANK2	chr4	114135280	-	ZNF664	chr12	124499392	+
intron-intron	ENST00000225308	ENST00000366732		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366733		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366734		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366735		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366736		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366738		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366741		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366740		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366739		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366742		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000366744		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000348259		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366746		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000465397		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000295008		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000336520		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000366747		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000336300		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000430433		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000225308	ENST00000391867		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000366731		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000225308	ENST00000411464		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366732		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366733		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366734		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366735		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366736		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366738		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366741		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366740		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366739		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366742		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000366744		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000348259		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366746		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000465397		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000295008		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000336520		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000366747		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000336300		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000430433		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000377095	ENST00000391867		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000366731		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000377095	ENST00000411464		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366732		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366733		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366734		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366735		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366736		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366738		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366741		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366740		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366739		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366742		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000366744		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000348259		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366746		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000465397		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000295008		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000336520		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000366747		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000336300		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000430433		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000590194	ENST00000391867		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000366731		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000590194	ENST00000411464		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366732		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366733		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366734		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366735		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366736		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366738		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366741		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366740		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366739		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366742		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000366744		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000348259		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366746		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000465397		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000295008		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000336520		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000366747		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000336300		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000430433		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000586016	ENST00000391867		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000366731		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000586016	ENST00000411464		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366732		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366733		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366734		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366735		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366736		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366738		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366741		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366740		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366739		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366742		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000366744		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000348259		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366746		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000465397		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000295008		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000336520		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000366747		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000336300		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000430433		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000537904	ENST00000391867		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000366731		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-5UTR	ENST00000537904	ENST00000411464		ChiTaRS3.1			AI086220	SLC25A39	chr17	42397139	+	MRPL55	chr1	228296954	-
intron-intron	ENST00000414242	ENST00000414242		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
intron-3UTR	ENST00000414242	ENST00000361479		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
intron-intron	ENST00000414242	ENST00000496525		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
3UTR-intron	ENST00000361479	ENST00000414242		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
3UTR-3UTR	ENST00000361479	ENST00000361479		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
3UTR-intron	ENST00000361479	ENST00000496525		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
intron-intron	ENST00000496525	ENST00000414242		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
intron-3UTR	ENST00000496525	ENST00000361479		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
intron-intron	ENST00000496525	ENST00000496525		ChiTaRS3.1			BM717590	MPHOSPH8	chr13	20246954	+	MPHOSPH8	chr13	20246503	+
intron-intron	ENST00000524189	ENST00000376389		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000456573		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000470643		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000420604		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000436822		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000492441		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000383382		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000460694		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000553223		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000470163		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000383562		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000496175		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000490802		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000430843		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-3UTR	ENST00000524189	ENST00000444632		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000524189	ENST00000466680		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000376389		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000456573		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000470643		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000420604		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000436822		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000492441		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000383382		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000460694		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000553223		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000470163		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000383562		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000496175		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000490802		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000430843		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-3UTR	ENST00000521515	ENST00000444632		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000521515	ENST00000466680		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000376389		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000456573		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000470643		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000420604		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000436822		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000492441		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000383382		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000460694		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000553223		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000470163		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000383562		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000496175		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000490802		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000430843		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-3UTR	ENST00000404075	ENST00000444632		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-intron	ENST00000404075	ENST00000466680		ChiTaRS3.1			BC014350	KIF13B	chr8	28966992	+	FLOT1	chr6	2027965	-
intron-3UTR	ENST00000397821	ENST00000554144		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000420433		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000556376		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000381260		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000337881		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-intron	ENST00000397821	ENST00000605395		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000508121		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000503639		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000553379		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000381255		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000317745		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000555760		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000397821	ENST00000556614		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000554144		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000420433		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000556376		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000381260		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000337881		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-intron	ENST00000379716	ENST00000605395		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000508121		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000503639		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000553379		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000381255		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000317745		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000555760		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379716	ENST00000556614		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000554144		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000420433		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000556376		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000381260		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000337881		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-intron	ENST00000379698	ENST00000605395		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000508121		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000503639		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000553379		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000381255		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000317745		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000555760		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379698	ENST00000556614		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000554144		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000420433		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000556376		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000381260		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000337881		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-intron	ENST00000541422	ENST00000605395		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000508121		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000503639		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000553379		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000381255		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000317745		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000555760		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000541422	ENST00000556614		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000554144		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000420433		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000556376		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000381260		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000337881		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-intron	ENST00000379697	ENST00000605395		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000508121		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000503639		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000553379		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000381255		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000317745		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000555760		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000379697	ENST00000556614		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000554144		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000420433		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000556376		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000381260		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000337881		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-intron	ENST00000477102	ENST00000605395		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000508121		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000503639		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000553379		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000381255		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000317745		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000555760		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
intron-3UTR	ENST00000477102	ENST00000556614		ChiTaRS3.1			DR980990	SH3KBP1	chrX	19674048	+	HOPX	chr4	57514363	-
In-frame	ENST00000322088	ENST00000322088		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
In-frame	ENST00000322088	ENST00000444322		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000322088	ENST00000477989		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000322088	ENST00000462990		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000322088	ENST00000473455		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
In-frame	ENST00000444322	ENST00000322088		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
In-frame	ENST00000444322	ENST00000444322		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000444322	ENST00000477989		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000444322	ENST00000462990		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000444322	ENST00000473455		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-3CDS	ENST00000477989	ENST00000322088		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-3CDS	ENST00000477989	ENST00000444322		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000477989	ENST00000477989		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000477989	ENST00000462990		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000477989	ENST00000473455		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
In-frame	ENST00000462990	ENST00000322088		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
In-frame	ENST00000462990	ENST00000444322		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000462990	ENST00000477989		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000462990	ENST00000462990		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
5CDS-intron	ENST00000462990	ENST00000473455		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-3CDS	ENST00000473455	ENST00000322088		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-3CDS	ENST00000473455	ENST00000444322		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000473455	ENST00000477989		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000473455	ENST00000462990		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000473455	ENST00000473455		ChiTaRS3.1			AW473090	PPP2R1A	chr19	52716252	-	PPP2R1A	chr19	52719071	+
intron-intron	ENST00000316020	ENST00000316020		ChiTaRS3.1			AF548120	OFCC1	chr6	9897240	+	OFCC1	chr6	9864277	+
intron-intron	ENST00000316020	ENST00000472329		ChiTaRS3.1			AF548120	OFCC1	chr6	9897240	+	OFCC1	chr6	9864277	+
intron-intron	ENST00000472329	ENST00000316020		ChiTaRS3.1			AF548120	OFCC1	chr6	9897240	+	OFCC1	chr6	9864277	+
intron-intron	ENST00000472329	ENST00000472329		ChiTaRS3.1			AF548120	OFCC1	chr6	9897240	+	OFCC1	chr6	9864277	+
intron-intron	ENST00000553277	ENST00000553277		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553277	ENST00000243077		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553277	ENST00000338962		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553277	ENST00000554174		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553277	ENST00000553446		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
5CDS-intron	ENST00000243077	ENST00000553277		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
5CDS-intron	ENST00000243077	ENST00000243077		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
5CDS-intron	ENST00000243077	ENST00000338962		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
5CDS-intron	ENST00000243077	ENST00000554174		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
5CDS-intron	ENST00000243077	ENST00000553446		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000338962	ENST00000553277		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000338962	ENST00000243077		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000338962	ENST00000338962		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000338962	ENST00000554174		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000338962	ENST00000553446		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000554174	ENST00000553277		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000554174	ENST00000243077		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000554174	ENST00000338962		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000554174	ENST00000554174		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000554174	ENST00000553446		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553446	ENST00000553277		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553446	ENST00000243077		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553446	ENST00000338962		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553446	ENST00000554174		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
intron-intron	ENST00000553446	ENST00000553446		ChiTaRS3.1			BF849780	LRP1	chr12	57567718	-	LRP1	chr12	57561226	+
3UTR-intron	ENST00000534336	ENST00000523698		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-intron	ENST00000534336	ENST00000517876		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-intron	ENST00000534336	ENST00000521450		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-intron	ENST00000534336	ENST00000403027		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-5UTR	ENST00000534336	ENST00000524105		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-5UTR	ENST00000534336	ENST00000285896		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-5UTR	ENST00000534336	ENST00000520671		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-5UTR	ENST00000534336	ENST00000521583		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-5UTR	ENST00000534336	ENST00000519404		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
3UTR-3UTR	ENST00000534336	ENST00000521402		ChiTaRS3.1			BE720800	MALAT1	chr11	65268014	-	CNOT8	chr5	154244793	-
intron-3CDS	ENST00000323798	ENST00000380605		ChiTaRS3.1			AI096400	GYS1	chr19	49471492	+	CPXM1	chr20	2776380	+
intron-3CDS	ENST00000263276	ENST00000380605		ChiTaRS3.1			AI096400	GYS1	chr19	49471492	+	CPXM1	chr20	2776380	+
intron-3CDS	ENST00000541188	ENST00000380605		ChiTaRS3.1			AI096400	GYS1	chr19	49471492	+	CPXM1	chr20	2776380	+
intron-3CDS	ENST00000544287	ENST00000380605		ChiTaRS3.1			AI096400	GYS1	chr19	49471492	+	CPXM1	chr20	2776380	+
intron-3CDS	ENST00000540532	ENST00000380605		ChiTaRS3.1			AI096400	GYS1	chr19	49471492	+	CPXM1	chr20	2776380	+
intron-3CDS	ENST00000457974	ENST00000380605		ChiTaRS3.1			AI096400	GYS1	chr19	49471492	+	CPXM1	chr20	2776380	+
intron-intron	ENST00000513454	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000513454	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000311337	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000311337	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000458112	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000458112	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000500692	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000500692	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000508177	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000508177	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000503794	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000503794	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000542860	ENST00000513454		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000311337		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000458112		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000500692		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000508177		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000503794		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000542860	ENST00000542860		ChiTaRS3.1			N45950	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000305188	ENST00000305188		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000305188	ENST00000397418		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000305188	ENST00000523910		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000397418	ENST00000305188		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000397418	ENST00000397418		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000397418	ENST00000523910		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000523910	ENST00000305188		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000523910	ENST00000397418		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
intron-intron	ENST00000523910	ENST00000523910		ChiTaRS3.1			AA856840	ESCO2	chr8	27667184	-	ESCO2	chr8	27667261	+
3UTR-3CDS	ENST00000321867	ENST00000321867		ChiTaRS3.1			BF886750	ULK1	chr12	132406205	-	ULK1	chr12	132404577	+
3UTR-3CDS	ENST00000321867	ENST00000540647		ChiTaRS3.1			BF886750	ULK1	chr12	132406205	-	ULK1	chr12	132404577	+
intron-3CDS	ENST00000540647	ENST00000321867		ChiTaRS3.1			BF886750	ULK1	chr12	132406205	-	ULK1	chr12	132404577	+
intron-3CDS	ENST00000540647	ENST00000540647		ChiTaRS3.1			BF886750	ULK1	chr12	132406205	-	ULK1	chr12	132404577	+
intron-intron	ENST00000536230	ENST00000340635		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000360047		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000507116		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000502484		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000546160		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000502575		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000358923		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000503258		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000405755		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000317118		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000536230	ENST00000503947		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000340635		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000360047		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000507116		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000502484		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000546160		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000502575		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000358923		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000503258		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000405755		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000317118		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000392282	ENST00000503947		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000340635		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000360047		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000507116		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000502484		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000546160		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000502575		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000358923		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000503258		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000405755		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000317118		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000538427	ENST00000503947		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000340635		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000360047		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000507116		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000502484		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000546160		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000502575		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000358923		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000503258		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000405755		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000317118		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000367456	ENST00000503947		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000340635		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000360047		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000507116		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000502484		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000546160		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000502575		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000358923		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000503258		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000405755		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000317118		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000461481	ENST00000503947		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000340635		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000360047		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000507116		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000502484		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000546160		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000502575		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000358923		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000503258		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000405755		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000317118		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-intron	ENST00000286332	ENST00000503947		ChiTaRS3.1			AW993560	TAB2	chr6	149684678	-	PDE4D	chr5	58950999	-
intron-5UTR	ENST00000536742	ENST00000374580		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000536742	ENST00000374574		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-intron	ENST00000536742	ENST00000479069		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000327554	ENST00000374580		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000327554	ENST00000374574		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-intron	ENST00000327554	ENST00000479069		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000539847	ENST00000374580		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000539847	ENST00000374574		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-intron	ENST00000539847	ENST00000479069		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000546345	ENST00000374580		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-5UTR	ENST00000546345	ENST00000374574		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
intron-intron	ENST00000546345	ENST00000479069		ChiTaRS3.1			U25110	CCDC60	chr12	119918297	-	BMPR2	chr2	203242157	+
3UTR-intron	ENST00000446912	ENST00000302003		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000344629		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000349503		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000302036		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000339511		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000436092		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000449570		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000302008		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
3UTR-intron	ENST00000446912	ENST00000383826		ChiTaRS3.1			BC062630	FAM157B	chr9	141138830	+	OGG1	chr3	9802254	-
intron-intron	ENST00000275605	ENST00000275605		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000275605	ENST00000395471		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000275605	ENST00000459834		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000395471	ENST00000275605		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000395471	ENST00000395471		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000395471	ENST00000459834		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000459834	ENST00000275605		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000459834	ENST00000395471		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000459834	ENST00000459834		ChiTaRS3.1			AW946340	PSPH	chr7	56146093	-	PSPH	chr7	56142333	+
intron-intron	ENST00000231721	ENST00000231721		ChiTaRS3.1			BI052480	SEMA3G	chr3	52473238	-	SEMA3G	chr3	52473373	+
3UTR-3UTR	ENST00000406961	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000406961	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000406961	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000406961	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000406961	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000406961	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000406961	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000406961	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000469850	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000469850	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000469850	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000469850	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000469850	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000469850	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000469850	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000469850	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000405141	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000405141	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000405141	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000405141	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000405141	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000405141	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000405141	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000405141	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000407230	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000407230	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000407230	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000407230	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000407230	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000407230	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000407230	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000407230	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000538539	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000538539	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000538539	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000538539	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000538539	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000538539	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000538539	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-3UTR	ENST00000538539	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000288599	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000288599	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000288599	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000288599	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000288599	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000288599	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000288599	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000288599	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000348332	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000348332	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000348332	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000348332	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000348332	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000348332	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000348332	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000348332	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000395856	ENST00000406961		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000395856	ENST00000469850		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000395856	ENST00000405141		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000395856	ENST00000407230		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-intron	ENST00000395856	ENST00000538539		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000395856	ENST00000288599		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000395856	ENST00000348332		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
3UTR-3UTR	ENST00000395856	ENST00000395856		ChiTaRS3.1			AA319820	NCOA1	chr2	24992801	-	NCOA1	chr2	24992887	+
intron-intron	ENST00000402746	ENST00000402746		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000402746	ENST00000399654		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000402746	ENST00000406869		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000402746	ENST00000265854		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000402746	ENST00000486340		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000399654	ENST00000402746		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000399654	ENST00000399654		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000399654	ENST00000406869		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000399654	ENST00000265854		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000399654	ENST00000486340		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000406869	ENST00000402746		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000406869	ENST00000399654		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000406869	ENST00000406869		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000406869	ENST00000265854		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000406869	ENST00000486340		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000265854	ENST00000402746		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000265854	ENST00000399654		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000265854	ENST00000406869		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000265854	ENST00000265854		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000265854	ENST00000486340		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000486340	ENST00000402746		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000486340	ENST00000399654		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000486340	ENST00000406869		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000486340	ENST00000265854		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
intron-intron	ENST00000486340	ENST00000486340		ChiTaRS3.1			CB243720	MAD1L1	chr7	2225378	+	MAD1L1	chr7	2225473	-
5CDS-intron	ENST00000344147	ENST00000378797		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000378781		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000429979		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000378784		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000378787		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000389908		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000409879		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000322896		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000534925		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000344147	ENST00000480935		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000378797		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000378781		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000429979		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000378784		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000378787		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000389908		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000409879		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000322896		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000534925		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-intron	ENST00000479629	ENST00000480935		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000378797		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000378781		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000429979		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000378784		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000378787		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000389908		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000409879		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000322896		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000534925		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000373714	ENST00000480935		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000378797		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000378781		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000429979		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000378784		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000378787		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000389908		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000409879		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000322896		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000534925		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000546109	ENST00000480935		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000378797		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000378781		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000429979		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000378784		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000378787		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000389908		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000409879		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000322896		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000534925		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
5CDS-intron	ENST00000422613	ENST00000480935		ChiTaRS3.1			BG981340	ZCCHC17	chr1	31821776	-	KIAA0226L	chr13	46941539	-
3UTR-3CDS	ENST00000224167	ENST00000224167		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
3UTR-3CDS	ENST00000224167	ENST00000371625		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
3UTR-intron	ENST00000224167	ENST00000460340		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
3UTR-3CDS	ENST00000371625	ENST00000224167		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
3UTR-3CDS	ENST00000371625	ENST00000371625		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
3UTR-intron	ENST00000371625	ENST00000460340		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
intron-3CDS	ENST00000460340	ENST00000224167		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
intron-3CDS	ENST00000460340	ENST00000371625		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
intron-intron	ENST00000460340	ENST00000460340		ChiTaRS3.1			BQ950270	PTGDS	chr9	139876170	+	PTGDS	chr9	139871961	+
5CDS-3UTR	ENST00000254644	ENST00000244137		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000254644	ENST00000397032		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000254644	ENST00000436370		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-5UTR	ENST00000254644	ENST00000591968		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000605125	ENST00000244137		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000605125	ENST00000397032		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000605125	ENST00000436370		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-5UTR	ENST00000605125	ENST00000591968		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000337109	ENST00000244137		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000337109	ENST00000397032		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000337109	ENST00000436370		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-5UTR	ENST00000337109	ENST00000591968		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000409180	ENST00000244137		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000409180	ENST00000397032		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-3UTR	ENST00000409180	ENST00000436370		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
5CDS-5UTR	ENST00000409180	ENST00000591968		ChiTaRS3.1			BQ426050	MRPL35	chr2	86437651	+	PEPD	chr19	33877937	-
intron-3UTR	ENST00000267890	ENST00000267890		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000267890	ENST00000567840		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000267890	ENST00000567274		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000267890	ENST00000567485		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-3UTR	ENST00000567840	ENST00000267890		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567840	ENST00000567840		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567840	ENST00000567274		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567840	ENST00000567485		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-3UTR	ENST00000567274	ENST00000267890		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567274	ENST00000567840		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567274	ENST00000567274		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567274	ENST00000567485		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-3UTR	ENST00000567485	ENST00000267890		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567485	ENST00000567840		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567485	ENST00000567274		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000567485	ENST00000567485		ChiTaRS3.1			BQ213460	TTBK2	chr15	43034231	+	TTBK2	chr15	43034142	-
intron-intron	ENST00000297533	ENST00000359282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000603815		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000437231		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000447282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000549863		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000359462		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000546463		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000552296		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000552819		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000455667		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000439930		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000548933		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000297533	ENST00000541275		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000359282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000603815		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000437231		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000447282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000549863		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000359462		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000546463		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000552296		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000552819		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000455667		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000439930		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000548933		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000392818	ENST00000541275		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000359282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000603815		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000437231		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000447282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000549863		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000359462		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000546463		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000552296		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000552819		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000455667		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000439930		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000548933		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000462940	ENST00000541275		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000359282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000603815		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000437231		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000447282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000549863		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000359462		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000546463		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000552296		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000552819		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000455667		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000439930		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000548933		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000482202	ENST00000541275		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000359282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000603815		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000437231		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000447282		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000549863		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000359462		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000546463		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000552296		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000552819		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000455667		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000439930		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000548933		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000476627	ENST00000541275		ChiTaRS3.1			BF804600	TMUB1	chr7	150779900	-	PCBP2	chr12	53862052	-
intron-intron	ENST00000293618	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000293618	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000293618	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000293618	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000293618	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000293618	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000293618	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000429001	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000398473	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518444	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000347328	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000522085	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000293618		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000429001		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000398473		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000518444		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000347328		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000522085		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000518561	ENST00000518561		ChiTaRS3.1			CV342770	LARP4	chr12	50855710	-	LARP4	chr12	50853078	+
intron-intron	ENST00000553331	ENST00000553331		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000553331	ENST00000216832		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000553331	ENST00000556530		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000553331	ENST00000557680		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
3UTR-intron	ENST00000216832	ENST00000553331		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
3UTR-intron	ENST00000216832	ENST00000216832		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
3UTR-intron	ENST00000216832	ENST00000556530		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
3UTR-intron	ENST00000216832	ENST00000557680		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000556530	ENST00000553331		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000556530	ENST00000216832		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000556530	ENST00000556530		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000556530	ENST00000557680		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000557680	ENST00000553331		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000557680	ENST00000216832		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000557680	ENST00000556530		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000557680	ENST00000557680		ChiTaRS3.1			AW380890	PNN	chr14	39651128	+	PNN	chr14	39649929	+
intron-intron	ENST00000228705	ENST00000228705		ChiTaRS3.1			DN914850	PPM1H	chr12	63053669	-	PPM1H	chr12	63056403	-
intron-intron	ENST00000228705	ENST00000551214		ChiTaRS3.1			DN914850	PPM1H	chr12	63053669	-	PPM1H	chr12	63056403	-
intron-intron	ENST00000551214	ENST00000228705		ChiTaRS3.1			DN914850	PPM1H	chr12	63053669	-	PPM1H	chr12	63056403	-
intron-intron	ENST00000551214	ENST00000551214		ChiTaRS3.1			DN914850	PPM1H	chr12	63053669	-	PPM1H	chr12	63056403	-
5CDS-intron	ENST00000263360	ENST00000535891		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000263360	ENST00000258749		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000263360	ENST00000431169		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000263360	ENST00000538464		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000263360	ENST00000491444		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000528180	ENST00000535891		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000528180	ENST00000258749		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000528180	ENST00000431169		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000528180	ENST00000538464		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000528180	ENST00000491444		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000327320	ENST00000535891		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000327320	ENST00000258749		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000327320	ENST00000431169		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000327320	ENST00000538464		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000327320	ENST00000491444		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000351625	ENST00000535891		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000351625	ENST00000258749		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000351625	ENST00000431169		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000351625	ENST00000538464		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
5CDS-intron	ENST00000351625	ENST00000491444		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000527888	ENST00000535891		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000527888	ENST00000258749		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000527888	ENST00000431169		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000527888	ENST00000538464		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
intron-intron	ENST00000527888	ENST00000491444		ChiTaRS3.1			DA945120	EED	chr11	85979547	+	AOAH	chr7	36573300	-
Frame-shit	ENST00000344771	ENST00000344771		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000344771	ENST00000395059		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000344771	ENST00000262518		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000395059	ENST00000344771		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000395059	ENST00000395059		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000395059	ENST00000262518		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000262518	ENST00000344771		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000262518	ENST00000395059		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
Frame-shit	ENST00000262518	ENST00000262518		ChiTaRS3.1			AI436740	SRCAP	chr16	30735705	-	SRCAP	chr16	30735997	+
5UTR-intron	ENST00000494857	ENST00000494857		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000494857	ENST00000522656		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000494857	ENST00000470360		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000494857	ENST00000004531		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000494857	ENST00000398090		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000522656	ENST00000494857		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000522656	ENST00000522656		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000522656	ENST00000470360		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000522656	ENST00000004531		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000522656	ENST00000398090		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000470360	ENST00000494857		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000470360	ENST00000522656		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000470360	ENST00000470360		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000470360	ENST00000004531		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
5UTR-intron	ENST00000470360	ENST00000398090		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000004531	ENST00000494857		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000004531	ENST00000522656		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000004531	ENST00000470360		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000004531	ENST00000004531		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000004531	ENST00000398090		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000398090	ENST00000494857		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000398090	ENST00000522656		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000398090	ENST00000470360		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000398090	ENST00000004531		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-intron	ENST00000398090	ENST00000398090		ChiTaRS3.1			DB377490	SLC7A2	chr8	17359813	-	SLC7A2	chr8	17377098	-
intron-3CDS	ENST00000404233	ENST00000404233		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000404233	ENST00000529972		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000404233	ENST00000525859		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000404233	ENST00000543287		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000529972	ENST00000404233		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000529972	ENST00000529972		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000529972	ENST00000525859		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000529972	ENST00000543287		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000525859	ENST00000404233		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000525859	ENST00000529972		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000525859	ENST00000525859		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000525859	ENST00000543287		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000543287	ENST00000404233		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000543287	ENST00000529972		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000543287	ENST00000525859		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000543287	ENST00000543287		ChiTaRS3.1			BG986700	HYOU1	chr11	118924905	+	HYOU1	chr11	118923026	+
intron-3CDS	ENST00000337768	ENST00000337768		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000337768	ENST00000406540		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000337768	ENST00000405491		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000337768	ENST00000464789		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000337768	ENST00000404798		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000406540	ENST00000337768		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000406540	ENST00000406540		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000406540	ENST00000405491		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000406540	ENST00000464789		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000406540	ENST00000404798		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000405491	ENST00000337768		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000405491	ENST00000406540		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000405491	ENST00000405491		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000405491	ENST00000464789		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000405491	ENST00000404798		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000464789	ENST00000337768		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000464789	ENST00000406540		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000464789	ENST00000405491		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000464789	ENST00000464789		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000464789	ENST00000404798		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000404798	ENST00000337768		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000404798	ENST00000406540		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000404798	ENST00000405491		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000404798	ENST00000464789		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-3CDS	ENST00000404798	ENST00000404798		ChiTaRS3.1			BF038130	SUPT7L	chr2	27876424	+	SUPT7L	chr2	27876370	-
intron-intron	ENST00000405486	ENST00000405486		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000405486	ENST00000356244		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000405486	ENST00000455915		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000405486	ENST00000407260		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000356244	ENST00000405486		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000356244	ENST00000356244		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000356244	ENST00000455915		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000356244	ENST00000407260		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000455915	ENST00000405486		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000455915	ENST00000356244		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000455915	ENST00000455915		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000455915	ENST00000407260		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000407260	ENST00000405486		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000407260	ENST00000356244		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000407260	ENST00000455915		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000407260	ENST00000407260		ChiTaRS3.1			BX097070	RANGAP1	chr22	41654962	-	RANGAP1	chr22	41656605	-
intron-intron	ENST00000414441	ENST00000414441		ChiTaRS3.1			BQ898620	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
intron-intron	ENST00000414441	ENST00000310512		ChiTaRS3.1			BQ898620	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
5CDS-intron	ENST00000310512	ENST00000414441		ChiTaRS3.1			BQ898620	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
5CDS-intron	ENST00000310512	ENST00000310512		ChiTaRS3.1			BQ898620	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
intron-3CDS	ENST00000361217	ENST00000261714		ChiTaRS3.1			BQ345050	DENND4B	chr1	153914267	+	BLMH	chr17	28618445	-
intron-5UTR	ENST00000361217	ENST00000394819		ChiTaRS3.1			BQ345050	DENND4B	chr1	153914267	+	BLMH	chr17	28618445	-
intron-intron	ENST00000361217	ENST00000582669		ChiTaRS3.1			BQ345050	DENND4B	chr1	153914267	+	BLMH	chr17	28618445	-
intron-3CDS	ENST00000474386	ENST00000261714		ChiTaRS3.1			BQ345050	DENND4B	chr1	153914267	+	BLMH	chr17	28618445	-
intron-5UTR	ENST00000474386	ENST00000394819		ChiTaRS3.1			BQ345050	DENND4B	chr1	153914267	+	BLMH	chr17	28618445	-
intron-intron	ENST00000474386	ENST00000582669		ChiTaRS3.1			BQ345050	DENND4B	chr1	153914267	+	BLMH	chr17	28618445	-
3UTR-intron	ENST00000327064	ENST00000408742		ChiTaRS3.1			F00180	CARM1	chr19	11033166	+	MIR548N	chr2	179452877	+
3UTR-intron	ENST00000344150	ENST00000408742		ChiTaRS3.1			F00180	CARM1	chr19	11033166	+	MIR548N	chr2	179452877	+
intron-3UTR	ENST00000374975	ENST00000296161		ChiTaRS3.1			DB343360	HLA-DRB5	chr6	32485331	+	DTX3L	chr3	122293268	-
intron-intron	ENST00000374975	ENST00000383661		ChiTaRS3.1			DB343360	HLA-DRB5	chr6	32485331	+	DTX3L	chr3	122293268	-
intron-3CDS	ENST00000232978	ENST00000232978		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000232978	ENST00000460910		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000232978	ENST00000442970		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-3CDS	ENST00000460910	ENST00000232978		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000460910	ENST00000460910		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000460910	ENST00000442970		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-3CDS	ENST00000442970	ENST00000232978		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000442970	ENST00000460910		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000442970	ENST00000442970		ChiTaRS3.1			BU688730	NKTR	chr3	42676619	-	NKTR	chr3	42678414	+
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-3UTR	ENST00000448637	ENST00000312675		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-3UTR	ENST00000448637	ENST00000543006		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-3UTR	ENST00000312675	ENST00000312675		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-3UTR	ENST00000312675	ENST00000543006		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-3UTR	ENST00000543006	ENST00000312675		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-3UTR	ENST00000543006	ENST00000543006		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
3UTR-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-3UTR	ENST00000471917	ENST00000312675		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-3UTR	ENST00000471917	ENST00000543006		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			BX119010	LPP	chr3	188601195	+	LPP	chr3	188598147	+
intron-intron	ENST00000196169	ENST00000196169		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000196169	ENST00000377894		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000196169	ENST00000535286		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000196169	ENST00000377881		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000196169	ENST00000463109		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377894	ENST00000196169		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377894	ENST00000377894		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377894	ENST00000535286		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377894	ENST00000377881		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377894	ENST00000463109		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000535286	ENST00000196169		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000535286	ENST00000377894		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000535286	ENST00000535286		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000535286	ENST00000377881		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000535286	ENST00000463109		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377881	ENST00000196169		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377881	ENST00000377894		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377881	ENST00000535286		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377881	ENST00000377881		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000377881	ENST00000463109		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000463109	ENST00000196169		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000463109	ENST00000377894		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000463109	ENST00000535286		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000463109	ENST00000377881		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000463109	ENST00000463109		ChiTaRS3.1			BQ304940	TDRD3	chr13	61013822	-	TDRD3	chr13	61041516	-
intron-intron	ENST00000536551	ENST00000536551		ChiTaRS3.1			CF887500	STMND1	chr6	17123347	+	STMND1	chr6	17122585	+
intron-3CDS	ENST00000356860	ENST00000356860		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000356860	ENST00000356253		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000356860	ENST00000423588		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000356860	ENST00000464354		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000356860	ENST00000535308		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000356253	ENST00000356860		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000356253	ENST00000356253		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000356253	ENST00000423588		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000356253	ENST00000464354		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000356253	ENST00000535308		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000423588	ENST00000356860		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000423588	ENST00000356253		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000423588	ENST00000423588		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000423588	ENST00000464354		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000423588	ENST00000535308		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000464354	ENST00000356860		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000464354	ENST00000356253		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000464354	ENST00000423588		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000464354	ENST00000464354		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000464354	ENST00000535308		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000535308	ENST00000356860		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000535308	ENST00000356253		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-3CDS	ENST00000535308	ENST00000423588		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000535308	ENST00000464354		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000535308	ENST00000535308		ChiTaRS3.1			AI434840	CACNA2D1	chr7	81695842	+	CACNA2D1	chr7	81978951	-
intron-intron	ENST00000339021	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000339021	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000339021	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000339021	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000355803	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000355803	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000355803	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000355803	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000325437	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000325437	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000325437	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000325437	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397514	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397514	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397514	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397514	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397515	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397515	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397515	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
3UTR-intron	ENST00000397515	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000403747	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000403747	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000403747	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000403747	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000566587	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000566587	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000566587	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000566587	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000406620	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000406620	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000406620	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000406620	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000402301	ENST00000533902		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000402301	ENST00000280258		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000402301	ENST00000441050		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000402301	ENST00000531521		ChiTaRS3.1			BQ005300	UBE2I	chr16	1376802	-	PRSS23	chr11	86630697	+
intron-intron	ENST00000288266	ENST00000449802		ChiTaRS3.1			X52870	APPL1	chr3	57296695	+	NBEAL1	chr2	204016812	+
intron-intron	ENST00000288266	ENST00000478884		ChiTaRS3.1			X52870	APPL1	chr3	57296695	+	NBEAL1	chr2	204016812	+
5CDS-intron	ENST00000301284	ENST00000435120		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000301284	ENST00000203630		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000301284	ENST00000542154		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000301284	ENST00000539187		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000301284	ENST00000564181		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000586684	ENST00000435120		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000586684	ENST00000203630		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000586684	ENST00000542154		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000586684	ENST00000539187		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-intron	ENST00000586684	ENST00000564181		ChiTaRS3.1			BM915020	HDGFRP2	chr19	4499655	+	MLF2	chr12	6875712	+
5CDS-3UTR	ENST00000453258	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000453258	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000453258	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000453258	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000453258	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000453258	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-intron	ENST00000453258	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000543964	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000543964	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000543964	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000543964	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000543964	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000543964	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-intron	ENST00000543964	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371207	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371207	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371207	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371207	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371207	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371207	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-intron	ENST00000371207	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371203	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371203	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371203	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371203	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371203	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371203	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-intron	ENST00000371203	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000539125	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000539125	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000539125	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000539125	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000539125	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000539125	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-intron	ENST00000539125	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371205	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371205	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371205	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371205	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371205	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-3UTR	ENST00000371205	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
5CDS-intron	ENST00000371205	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3UTR	ENST00000490659	ENST00000453258		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3UTR	ENST00000490659	ENST00000543964		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3UTR	ENST00000490659	ENST00000371207		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3UTR	ENST00000490659	ENST00000371203		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3UTR	ENST00000490659	ENST00000539125		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3UTR	ENST00000490659	ENST00000371205		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-intron	ENST00000490659	ENST00000490659		ChiTaRS3.1			AW581220	ENTPD1	chr10	97626077	+	ENTPD1	chr10	97626263	-
intron-3CDS	ENST00000199940	ENST00000367302		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000199940	ENST00000367296		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000199940	ENST00000295624		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000199940	ENST00000367297		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000199940	ENST00000367300		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000199940	ENST00000367295		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-intron	ENST00000199940	ENST00000469130		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000360351	ENST00000367302		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000360351	ENST00000367296		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000360351	ENST00000295624		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000360351	ENST00000367297		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000360351	ENST00000367300		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000360351	ENST00000367295		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-intron	ENST00000360351	ENST00000469130		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000361559	ENST00000367302		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000361559	ENST00000367296		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000361559	ENST00000295624		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000361559	ENST00000367297		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000361559	ENST00000367300		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000361559	ENST00000367295		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-intron	ENST00000361559	ENST00000469130		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000392194	ENST00000367302		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000392194	ENST00000367296		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000392194	ENST00000295624		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000392194	ENST00000367297		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000392194	ENST00000367300		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000392194	ENST00000367295		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-intron	ENST00000392194	ENST00000469130		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000447185	ENST00000367302		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000447185	ENST00000367296		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000447185	ENST00000295624		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000447185	ENST00000367297		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000447185	ENST00000367300		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000447185	ENST00000367295		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-intron	ENST00000447185	ENST00000469130		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000475600	ENST00000367302		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000475600	ENST00000367296		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000475600	ENST00000295624		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000475600	ENST00000367297		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000475600	ENST00000367300		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-3CDS	ENST00000475600	ENST00000367295		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
intron-intron	ENST00000475600	ENST00000469130		ChiTaRS3.1			T05560	MAP2	chr2	210393936	-	NAV1	chr1	201788982	+
3UTR-3CDS	ENST00000534336	ENST00000237654		ChiTaRS3.1			BF577160	MALAT1	chr11	65269804	+	CCNI	chr4	77969560	-
3UTR-3CDS	ENST00000534336	ENST00000537948		ChiTaRS3.1			BF577160	MALAT1	chr11	65269804	+	CCNI	chr4	77969560	-
3UTR-intron	ENST00000534336	ENST00000504697		ChiTaRS3.1			BF577160	MALAT1	chr11	65269804	+	CCNI	chr4	77969560	-
intron-intron	ENST00000421182	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000421182	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000421182	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000421182	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000421182	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357867	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357867	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357867	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357867	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357867	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000323926	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000323926	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000323926	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000323926	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000323926	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000336916	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000336916	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000336916	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000336916	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000336916	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000354785	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000354785	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000354785	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000354785	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000354785	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357009	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357009	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357009	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357009	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000357009	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000346544	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000346544	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000346544	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000346544	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000346544	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000345488	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000345488	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000345488	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000345488	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000345488	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000359671	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000359671	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000359671	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000359671	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000359671	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000446046	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000446046	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000446046	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000446046	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000446046	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000443816	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000443816	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000443816	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000443816	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000443816	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000432072	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000432072	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000432072	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000432072	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000432072	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000356005	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000356005	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000356005	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000356005	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000356005	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000490833	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000490833	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000490833	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000490833	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000490833	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000426059	ENST00000581006		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000426059	ENST00000498772		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000426059	ENST00000225609		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000426059	ENST00000395844		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-intron	ENST00000426059	ENST00000463810		ChiTaRS3.1			BE706180	FN1	chr2	216264037	-	PIGL	chr17	16167728	+
intron-3CDS	ENST00000432519	ENST00000432519		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-3CDS	ENST00000432519	ENST00000334133		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-intron	ENST00000432519	ENST00000483671		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-3CDS	ENST00000334133	ENST00000432519		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-3CDS	ENST00000334133	ENST00000334133		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-intron	ENST00000334133	ENST00000483671		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-3CDS	ENST00000483671	ENST00000432519		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-3CDS	ENST00000483671	ENST00000334133		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-intron	ENST00000483671	ENST00000483671		ChiTaRS3.1			AA210870	RFTN1	chr3	16450914	+	RFTN1	chr3	16419269	+
intron-intron	ENST00000540235	ENST00000376773		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000376772		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000376769		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000376765		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000376763		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000376758		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000441553		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000437937		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000446310		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000414618		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000434591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000452227		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000430828		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000436591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000448210		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000444994		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000412077		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000422273		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000433942		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000452679		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000417223		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000436833		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000428563		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000449435		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000455350		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000448378		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000429382		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000418211		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000444101		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000430959		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000400658		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000383612		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000400657		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000400656		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000400655		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000400654		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000448550		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000431424		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000414032		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000439463		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000451993		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000540235	ENST00000450177		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000540235	ENST00000437171		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000540235	ENST00000449087		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000540235	ENST00000431977		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000540235	ENST00000433662		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000540235	ENST00000458506		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000540235	ENST00000455887		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000376773		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000376772		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000376769		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000376765		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000376763		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000376758		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000441553		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000437937		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000446310		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000414618		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000434591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000452227		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000430828		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000436591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000448210		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000444994		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000412077		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000422273		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000433942		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000452679		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000417223		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000436833		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000428563		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000449435		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000455350		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000448378		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000429382		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000418211		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000444101		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000430959		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000400658		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000383612		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000400657		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000400656		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000400655		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000400654		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000448550		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000431424		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000414032		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000439463		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000451993		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393930	ENST00000450177		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393930	ENST00000437171		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393930	ENST00000449087		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393930	ENST00000431977		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393930	ENST00000433662		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393930	ENST00000458506		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393930	ENST00000455887		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000376773		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000376772		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000376769		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000376765		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000376763		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000376758		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000441553		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000437937		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000446310		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000414618		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000434591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000452227		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000430828		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000436591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000448210		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000444994		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000412077		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000422273		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000433942		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000452679		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000417223		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000436833		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000428563		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000449435		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000455350		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000448378		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000429382		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000418211		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000444101		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000430959		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000400658		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000383612		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000400657		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000400656		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000400655		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000400654		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000448550		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000431424		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000414032		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000439463		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000451993		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000393931	ENST00000450177		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393931	ENST00000437171		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393931	ENST00000449087		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393931	ENST00000431977		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393931	ENST00000433662		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393931	ENST00000458506		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000393931	ENST00000455887		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000376773		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000376772		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000376769		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000376765		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000376763		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000376758		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000441553		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000437937		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000446310		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000414618		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000434591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000452227		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000430828		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000436591		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000448210		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000444994		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000412077		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000422273		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000433942		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000452679		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000417223		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000436833		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000428563		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000449435		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000455350		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000448378		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000429382		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000418211		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000444101		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000430959		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000400658		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000383612		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000400657		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000400656		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000400655		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000400654		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000448550		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000431424		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000414032		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000439463		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000451993		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000310706	ENST00000450177		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000310706	ENST00000437171		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000310706	ENST00000449087		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000310706	ENST00000431977		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000310706	ENST00000433662		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000310706	ENST00000458506		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-3UTR	ENST00000310706	ENST00000455887		ChiTaRS3.1			BF370190	JUP	chr17	39847082	+	PPP1R11	chr6	1367758	-
intron-intron	ENST00000389462	ENST00000553400		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
intron-intron	ENST00000389462	ENST00000330836		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
intron-intron	ENST00000389462	ENST00000544005		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
intron-intron	ENST00000389462	ENST00000555054		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000309083	ENST00000553400		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000309083	ENST00000330836		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000309083	ENST00000544005		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000309083	ENST00000555054		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000538057	ENST00000553400		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000538057	ENST00000330836		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000538057	ENST00000544005		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
3UTR-intron	ENST00000538057	ENST00000555054		ChiTaRS3.1			CA429870	PTMS	chr12	6880049	-	DDX24	chr14	94545758	-
intron-3CDS	ENST00000434724	ENST00000296522		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000434724	ENST00000296521		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000434724	ENST00000510901		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000434724	ENST00000422112		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000434724	ENST00000541923		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000434724	ENST00000542498		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000434724	ENST00000504433		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000439887	ENST00000296522		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000439887	ENST00000296521		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000439887	ENST00000510901		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000439887	ENST00000422112		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000439887	ENST00000541923		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000439887	ENST00000542498		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000439887	ENST00000504433		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000563468	ENST00000296522		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000563468	ENST00000296521		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000563468	ENST00000510901		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000563468	ENST00000422112		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000563468	ENST00000541923		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000563468	ENST00000542498		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000563468	ENST00000504433		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000420576	ENST00000296522		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000420576	ENST00000296521		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000420576	ENST00000510901		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000420576	ENST00000422112		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000420576	ENST00000541923		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000420576	ENST00000542498		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000420576	ENST00000504433		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000564790	ENST00000296522		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-3CDS	ENST00000564790	ENST00000296521		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000564790	ENST00000510901		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000564790	ENST00000422112		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000564790	ENST00000541923		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000564790	ENST00000542498		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
intron-5UTR	ENST00000564790	ENST00000504433		ChiTaRS3.1			BF736330	GSPT1	chr16	11991740	+	HPGD	chr4	175443155	-
3UTR-3UTR	ENST00000492406	ENST00000492406		ChiTaRS3.1			BG284520	SLC35A5	chr3	112301696	-	SLC35A5	chr3	112301750	+
3UTR-3UTR	ENST00000492406	ENST00000460713		ChiTaRS3.1			BG284520	SLC35A5	chr3	112301696	-	SLC35A5	chr3	112301750	+
3UTR-3UTR	ENST00000460713	ENST00000492406		ChiTaRS3.1			BG284520	SLC35A5	chr3	112301696	-	SLC35A5	chr3	112301750	+
3UTR-3UTR	ENST00000460713	ENST00000460713		ChiTaRS3.1			BG284520	SLC35A5	chr3	112301696	-	SLC35A5	chr3	112301750	+
intron-intron	ENST00000399506	ENST00000399506		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399506	ENST00000302955		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399506	ENST00000399510		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399506	ENST00000485100		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000302955	ENST00000399506		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000302955	ENST00000302955		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000302955	ENST00000399510		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000302955	ENST00000485100		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399510	ENST00000399506		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399510	ENST00000302955		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399510	ENST00000399510		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000399510	ENST00000485100		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000485100	ENST00000399506		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000485100	ENST00000302955		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000485100	ENST00000399510		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
intron-intron	ENST00000485100	ENST00000485100		ChiTaRS3.1			CN417710	DLG4	chr17	7111367	-	DLG4	chr17	7120815	-
5CDS-3UTR	ENST00000271277	ENST00000546591		ChiTaRS3.1			AK023340	CTTNBP2NL	chr1	112999518	+	RPL41	chr12	56511502	+
5CDS-3UTR	ENST00000271277	ENST00000501597		ChiTaRS3.1			AK023340	CTTNBP2NL	chr1	112999518	+	RPL41	chr12	56511502	+
5CDS-intron	ENST00000271277	ENST00000552314		ChiTaRS3.1			AK023340	CTTNBP2NL	chr1	112999518	+	RPL41	chr12	56511502	+
3UTR-3UTR	ENST00000607039	ENST00000546591		ChiTaRS3.1			AK023340	CTTNBP2NL	chr1	112999518	+	RPL41	chr12	56511502	+
3UTR-3UTR	ENST00000607039	ENST00000501597		ChiTaRS3.1			AK023340	CTTNBP2NL	chr1	112999518	+	RPL41	chr12	56511502	+
3UTR-intron	ENST00000607039	ENST00000552314		ChiTaRS3.1			AK023340	CTTNBP2NL	chr1	112999518	+	RPL41	chr12	56511502	+
intron-5UTR	ENST00000265351	ENST00000248553		ChiTaRS3.1			Z23090	XPO5	chr6	43506601	-	HSPB1	chr7	75932016	+
intron-intron	ENST00000265351	ENST00000429938		ChiTaRS3.1			Z23090	XPO5	chr6	43506601	-	HSPB1	chr7	75932016	+
intron-5UTR	ENST00000424378	ENST00000248553		ChiTaRS3.1			Z23090	XPO5	chr6	43506601	-	HSPB1	chr7	75932016	+
intron-intron	ENST00000424378	ENST00000429938		ChiTaRS3.1			Z23090	XPO5	chr6	43506601	-	HSPB1	chr7	75932016	+
intron-3UTR	ENST00000454872	ENST00000261401		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000454872	ENST00000541050		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000454872	ENST00000549384		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000454872	ENST00000421578		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000454872	ENST00000420959		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000454872	ENST00000549772		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-3UTR	ENST00000473253	ENST00000261401		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000473253	ENST00000541050		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000473253	ENST00000549384		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000473253	ENST00000421578		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000473253	ENST00000420959		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000473253	ENST00000549772		ChiTaRS3.1			BF816620	NAALADL2	chr3	174181215	+	CORO1C	chr12	109039632	-
intron-intron	ENST00000579585	ENST00000355683		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000579585	ENST00000357479		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000579585	ENST00000366206		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000584573	ENST00000355683		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000584573	ENST00000357479		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000584573	ENST00000366206		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000361733	ENST00000355683		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000361733	ENST00000357479		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000361733	ENST00000366206		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000361357	ENST00000355683		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000361357	ENST00000357479		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000361357	ENST00000366206		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000577395	ENST00000355683		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000577395	ENST00000357479		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000577395	ENST00000366206		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000577784	ENST00000355683		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000577784	ENST00000357479		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-intron	ENST00000577784	ENST00000366206		ChiTaRS3.1			AV719690	MAP3K3	chr17	61748907	-	STRN3	chr14	31487938	+
intron-3CDS	ENST00000358823	ENST00000358823		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000358823	ENST00000413307		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000358823	ENST00000236925		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000413307	ENST00000358823		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000413307	ENST00000413307		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000413307	ENST00000236925		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000236925	ENST00000358823		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000236925	ENST00000413307		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000236925	ENST00000236925		ChiTaRS3.1			BC056910	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
3UTR-3CDS	ENST00000303375	ENST00000375807		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-intron	ENST00000303375	ENST00000339901		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-intron	ENST00000303375	ENST00000534113		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-3UTR	ENST00000303375	ENST00000470305		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-3CDS	ENST00000446119	ENST00000375807		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-intron	ENST00000446119	ENST00000339901		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-intron	ENST00000446119	ENST00000534113		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
3UTR-3UTR	ENST00000446119	ENST00000470305		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
intron-3CDS	ENST00000580916	ENST00000375807		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
intron-intron	ENST00000580916	ENST00000339901		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
intron-intron	ENST00000580916	ENST00000534113		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
intron-3UTR	ENST00000580916	ENST00000470305		ChiTaRS3.1			AA837640	MRC2	chr17	60770843	-	SECISBP2	chr9	91940369	-
intron-intron	ENST00000459639	ENST00000482253		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000459639	ENST00000609116		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000459639	ENST00000370197		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000459639	ENST00000370198		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000459639	ENST00000426398		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000459639	ENST00000394184		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000459639	ENST00000541987		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000482253		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000609116		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000370197		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000370198		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000426398		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000394184		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000380276	ENST00000541987		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000482253		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000609116		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000370197		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000370198		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000426398		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000394184		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000291552	ENST00000541987		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000482253		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000609116		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000370197		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000370198		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000426398		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000394184		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-intron	ENST00000398137	ENST00000541987		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000482253		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000609116		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000370197		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000370198		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000426398		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000394184		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
5CDS-intron	ENST00000486519	ENST00000541987		ChiTaRS3.1			DB319520	U2AF1	chr21	44513296	+	PTBP2	chr1	97246345	-
intron-3CDS	ENST00000359470	ENST00000359470		ChiTaRS3.1			BE792550	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-5UTR	ENST00000359470	ENST00000461135		ChiTaRS3.1			BE792550	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-3CDS	ENST00000461135	ENST00000359470		ChiTaRS3.1			BE792550	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-5UTR	ENST00000461135	ENST00000461135		ChiTaRS3.1			BE792550	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-intron	ENST00000263390	ENST00000263390		ChiTaRS3.1			AL516980	MED26	chr19	16636283	-	MED26	chr19	16646372	-
intron-intron	ENST00000355683	ENST00000579585		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000584573		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000361733		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000361357		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000577395		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000577784		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000579585		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000584573		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000361733		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000361357		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000577395		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000577784		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000579585		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000584573		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000361733		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000361357		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000577395		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000577784		ChiTaRS3.1			AV655690	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000256646	ENST00000374723		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000256646	ENST00000374720		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000256646	ENST00000374724		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000256646	ENST00000343170		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000256646	ENST00000607692		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000602566	ENST00000374723		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000602566	ENST00000374720		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000602566	ENST00000374724		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000602566	ENST00000343170		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000602566	ENST00000607692		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000493703	ENST00000374723		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000493703	ENST00000374720		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000493703	ENST00000374724		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000493703	ENST00000343170		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000493703	ENST00000607692		ChiTaRS3.1			CD050630	NOTCH2	chr1	120612011	-	SLC44A1	chr9	108007210	+
intron-intron	ENST00000455140	ENST00000349703		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000455140	ENST00000381897		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000455140	ENST00000418436		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000248070	ENST00000349703		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000248070	ENST00000381897		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000248070	ENST00000418436		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000535753	ENST00000349703		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000535753	ENST00000381897		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000535753	ENST00000418436		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000594975	ENST00000349703		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000594975	ENST00000381897		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000594975	ENST00000418436		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000602009	ENST00000349703		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000602009	ENST00000381897		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000602009	ENST00000418436		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000597937	ENST00000349703		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000597937	ENST00000381897		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-intron	ENST00000597937	ENST00000418436		ChiTaRS3.1			BF923990	EPS15L1	chr19	16479383	+	RFC1	chr4	39306343	+
intron-3CDS	ENST00000238571	ENST00000202773		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
intron-3CDS	ENST00000238571	ENST00000424576		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
Frame-shit	ENST00000325680	ENST00000202773		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
Frame-shit	ENST00000325680	ENST00000424576		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
Frame-shit	ENST00000552421	ENST00000202773		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
Frame-shit	ENST00000552421	ENST00000424576		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
intron-3CDS	ENST00000546901	ENST00000202773		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
intron-3CDS	ENST00000546901	ENST00000424576		ChiTaRS3.1			AK095760	YLPM1	chr14	75248629	+	RPL6	chr12	112843089	-
intron-3UTR	ENST00000323929	ENST00000551109		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323929	ENST00000352268		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323929	ENST00000394313		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323929	ENST00000338010		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323929	ENST00000546970		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000323929	ENST00000552382		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000323929	ENST00000551771		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000407439	ENST00000551109		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000407439	ENST00000352268		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000407439	ENST00000394313		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000407439	ENST00000338010		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000407439	ENST00000546970		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000407439	ENST00000552382		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000407439	ENST00000551771		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323977	ENST00000551109		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323977	ENST00000352268		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323977	ENST00000394313		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323977	ENST00000338010		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000323977	ENST00000546970		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000323977	ENST00000552382		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000323977	ENST00000551771		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000393241	ENST00000551109		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000393241	ENST00000352268		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000393241	ENST00000394313		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000393241	ENST00000338010		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000393241	ENST00000546970		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000393241	ENST00000552382		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000393241	ENST00000551771		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000540013	ENST00000551109		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000540013	ENST00000352268		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000540013	ENST00000394313		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000540013	ENST00000338010		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000540013	ENST00000546970		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000540013	ENST00000552382		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000540013	ENST00000551771		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000536144	ENST00000551109		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000536144	ENST00000352268		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000536144	ENST00000394313		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000536144	ENST00000338010		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-3UTR	ENST00000536144	ENST00000546970		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000536144	ENST00000552382		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000536144	ENST00000551771		ChiTaRS3.1			AW291910	MRE11A	chr11	94151783	+	ZNF385A	chr12	54763048	-
intron-intron	ENST00000340700	ENST00000427277		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000340700	ENST00000297954		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000340700	ENST00000395475		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000340700	ENST00000356055		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000340700	ENST00000349097		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000340700	ENST00000395477		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000340700	ENST00000471076		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000427277		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000297954		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000395475		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000356055		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000349097		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000395477		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000312350	ENST00000471076		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000427277		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000297954		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000395475		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000356055		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000349097		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000395477		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000319231	ENST00000471076		ChiTaRS3.1			BE062230	KCNK10	chr14	88781775	+	WNK2	chr9	95964087	-
intron-intron	ENST00000261879	ENST00000261879		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000261879	ENST00000380343		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000261879	ENST00000560716		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000380343	ENST00000261879		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000380343	ENST00000380343		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000380343	ENST00000560716		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000560716	ENST00000261879		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000560716	ENST00000380343		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
intron-intron	ENST00000560716	ENST00000560716		ChiTaRS3.1			DB166550	APH1B	chr15	63574609	+	APH1B	chr15	63571675	+
3UTR-3UTR	ENST00000578921	ENST00000578921		ChiTaRS3.1			CB241670	RAB31	chr18	9862439	-	RAB31	chr18	9862134	+
3UTR-intron	ENST00000578921	ENST00000577284		ChiTaRS3.1			CB241670	RAB31	chr18	9862439	-	RAB31	chr18	9862134	+
intron-3UTR	ENST00000577284	ENST00000578921		ChiTaRS3.1			CB241670	RAB31	chr18	9862439	-	RAB31	chr18	9862134	+
intron-intron	ENST00000577284	ENST00000577284		ChiTaRS3.1			CB241670	RAB31	chr18	9862439	-	RAB31	chr18	9862134	+
intron-5UTR	ENST00000331925	ENST00000359511		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000331925	ENST00000423538		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-intron	ENST00000331925	ENST00000469537		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000573283	ENST00000359511		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000573283	ENST00000423538		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-intron	ENST00000573283	ENST00000469537		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000575842	ENST00000359511		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000575842	ENST00000423538		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-intron	ENST00000575842	ENST00000469537		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000575087	ENST00000359511		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-5UTR	ENST00000575087	ENST00000423538		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-intron	ENST00000575087	ENST00000469537		ChiTaRS3.1			BM552360	ACTG1	chr17	79477706	+	SLC25A44	chr1	156163920	+
intron-3UTR	ENST00000379649	ENST00000317697		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-3UTR	ENST00000379649	ENST00000536549		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000537754		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000536953		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000539528		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000535055		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000536071		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000540782		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-intron	ENST00000379649	ENST00000535988		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-3UTR	ENST00000239878	ENST00000317697		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-3UTR	ENST00000239878	ENST00000536549		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000537754		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000536953		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000539528		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000535055		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000536071		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000540782		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000239878	ENST00000535988		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-3UTR	ENST00000379641	ENST00000317697		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-3UTR	ENST00000379641	ENST00000536549		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000537754		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000536953		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000539528		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000535055		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000536071		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000540782		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
3UTR-intron	ENST00000379641	ENST00000535988		ChiTaRS3.1			C16520	UFM1	chr13	38936955	-	ASB8	chr12	48541754	-
intron-3CDS	ENST00000264982	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000264982	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000264982	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000264982	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000264982	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000264982	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000264982	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000542237	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000542237	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000542237	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000542237	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000542237	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000542237	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000542237	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000489254	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000489254	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000489254	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000489254	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000489254	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000489254	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000489254	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000484888	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000484888	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000484888	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000484888	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000484888	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000484888	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000484888	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000481834	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000481834	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000481834	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000481834	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000481834	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000481834	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000481834	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000478673	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000478673	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000478673	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000478673	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000478673	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000478673	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000478673	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000464035	ENST00000264982		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000464035	ENST00000542237		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000464035	ENST00000489254		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000464035	ENST00000484888		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000464035	ENST00000481834		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-5UTR	ENST00000464035	ENST00000478673		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-intron	ENST00000464035	ENST00000464035		ChiTaRS3.1			BM802320	CEP70	chr3	138256078	+	CEP70	chr3	138251407	-
intron-3CDS	ENST00000216281	ENST00000216281		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000216281	ENST00000334701		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000216281	ENST00000441629		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-intron	ENST00000216281	ENST00000558600		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000334701	ENST00000216281		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000334701	ENST00000334701		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000334701	ENST00000441629		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-intron	ENST00000334701	ENST00000558600		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000441629	ENST00000216281		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000441629	ENST00000334701		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000441629	ENST00000441629		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-intron	ENST00000441629	ENST00000558600		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000558600	ENST00000216281		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000558600	ENST00000334701		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-3CDS	ENST00000558600	ENST00000441629		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-intron	ENST00000558600	ENST00000558600		ChiTaRS3.1			CA419620	HSP90AA1	chr14	102549507	+	HSP90AA1	chr14	102549490	-
intron-intron	ENST00000266383	ENST00000253506		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000591814		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000397790		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000587635		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000427363		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000542384		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000318065		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000545796		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000592223		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000329101		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000586434		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000266383	ENST00000590172		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000253506		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000591814		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000397790		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000587635		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000427363		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000542384		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000318065		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000545796		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000592223		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000329101		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000586434		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000544638	ENST00000590172		ChiTaRS3.1			BF759460	B4GALNT3	chr12	648101	+	NFATC1	chr18	77215311	+
intron-intron	ENST00000316005	ENST00000264316		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000316005	ENST00000510457		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000316005	ENST00000507351		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370521	ENST00000264316		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370521	ENST00000510457		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370521	ENST00000507351		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370505	ENST00000264316		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370505	ENST00000510457		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370505	ENST00000507351		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370513	ENST00000264316		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370513	ENST00000510457		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370513	ENST00000507351		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000544045	ENST00000264316		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000544045	ENST00000510457		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000544045	ENST00000507351		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000495119	ENST00000264316		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000495119	ENST00000510457		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000495119	ENST00000507351		ChiTaRS3.1			H87820	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-3UTR	ENST00000500728	ENST00000500728		ChiTaRS3.1			AI470190	LRPAP1	chr4	3514450	+	LRPAP1	chr4	3514563	-
intron-intron	ENST00000500728	ENST00000296325		ChiTaRS3.1			AI470190	LRPAP1	chr4	3514450	+	LRPAP1	chr4	3514563	-
intron-3UTR	ENST00000296325	ENST00000500728		ChiTaRS3.1			AI470190	LRPAP1	chr4	3514450	+	LRPAP1	chr4	3514563	-
intron-intron	ENST00000296325	ENST00000296325		ChiTaRS3.1			AI470190	LRPAP1	chr4	3514450	+	LRPAP1	chr4	3514563	-
intron-intron	ENST00000265069	ENST00000265069		ChiTaRS3.1			BC063380	ZFR	chr5	32429327	-	ZFR	chr5	32437081	-
intron-intron	ENST00000265069	ENST00000510369		ChiTaRS3.1			BC063380	ZFR	chr5	32429327	-	ZFR	chr5	32437081	-
intron-intron	ENST00000510369	ENST00000265069		ChiTaRS3.1			BC063380	ZFR	chr5	32429327	-	ZFR	chr5	32437081	-
intron-intron	ENST00000510369	ENST00000510369		ChiTaRS3.1			BC063380	ZFR	chr5	32429327	-	ZFR	chr5	32437081	-
3UTR-3UTR	ENST00000452510	ENST00000452510		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
3UTR-3UTR	ENST00000452510	ENST00000354283		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
3UTR-intron	ENST00000452510	ENST00000509178		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
3UTR-3UTR	ENST00000354283	ENST00000452510		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
3UTR-3UTR	ENST00000354283	ENST00000354283		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
3UTR-intron	ENST00000354283	ENST00000509178		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
intron-3UTR	ENST00000509178	ENST00000452510		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
intron-3UTR	ENST00000509178	ENST00000354283		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
intron-intron	ENST00000509178	ENST00000509178		ChiTaRS3.1			AA653160	DDX46	chr5	134164846	-	DDX46	chr5	134164803	+
intron-intron	ENST00000548589	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000548589	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000548589	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000548589	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000548589	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000552699	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000552699	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000552699	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000552699	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000552699	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000267115	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000267115	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000267115	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000267115	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000267115	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000549385	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000549385	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000549385	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000549385	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000549385	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000423828	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000423828	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000423828	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000423828	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
5UTR-intron	ENST00000423828	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000395006	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000395006	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000395006	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000395006	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000395006	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000547798	ENST00000280187		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000547798	ENST00000393658		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000547798	ENST00000506894		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000547798	ENST00000515090		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
intron-intron	ENST00000547798	ENST00000506219		ChiTaRS3.1			DA189160	TMBIM6	chr12	50135841	+	GPM6A	chr4	176924296	-
In-frame	ENST00000324856	ENST00000324856		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000324856	ENST00000457599		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000324856	ENST00000374152		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
5CDS-intron	ENST00000324856	ENST00000540690		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000457599	ENST00000324856		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000457599	ENST00000457599		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000457599	ENST00000374152		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
5CDS-intron	ENST00000457599	ENST00000540690		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000374152	ENST00000324856		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000374152	ENST00000457599		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
In-frame	ENST00000374152	ENST00000374152		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
5CDS-intron	ENST00000374152	ENST00000540690		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
intron-3CDS	ENST00000540690	ENST00000324856		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
intron-3CDS	ENST00000540690	ENST00000457599		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
intron-3CDS	ENST00000540690	ENST00000374152		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
intron-intron	ENST00000540690	ENST00000540690		ChiTaRS3.1			AW847910	ARID1A	chr1	27057829	-	ARID1A	chr1	27094341	+
intron-intron	ENST00000288985	ENST00000285238		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000288985	ENST00000515707		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000288985	ENST00000427699		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000288985	ENST00000510891		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000466840	ENST00000285238		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000466840	ENST00000515707		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000466840	ENST00000427699		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000466840	ENST00000510891		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000437817	ENST00000285238		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000437817	ENST00000515707		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000437817	ENST00000427699		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000437817	ENST00000510891		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000407474	ENST00000285238		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000407474	ENST00000515707		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000407474	ENST00000427699		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000407474	ENST00000510891		ChiTaRS3.1			AW450940	ERCC6L2	chr9	98776644	-	ABCC3	chr17	48738271	-
intron-intron	ENST00000330722	ENST00000353024		ChiTaRS3.1			AW366720	KRT6A	chr12	52881426	-	TUFT1	chr1	151538704	+
intron-intron	ENST00000330722	ENST00000392712		ChiTaRS3.1			AW366720	KRT6A	chr12	52881426	-	TUFT1	chr1	151538704	+
intron-intron	ENST00000330722	ENST00000368849		ChiTaRS3.1			AW366720	KRT6A	chr12	52881426	-	TUFT1	chr1	151538704	+
intron-intron	ENST00000330722	ENST00000368848		ChiTaRS3.1			AW366720	KRT6A	chr12	52881426	-	TUFT1	chr1	151538704	+
intron-intron	ENST00000330722	ENST00000538902		ChiTaRS3.1			AW366720	KRT6A	chr12	52881426	-	TUFT1	chr1	151538704	+
intron-intron	ENST00000409478	ENST00000407073		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000409478	ENST00000478804		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000409478	ENST00000404807		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000329971	ENST00000407073		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000329971	ENST00000478804		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000329971	ENST00000404807		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000264160	ENST00000407073		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000264160	ENST00000478804		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000264160	ENST00000404807		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000410054	ENST00000407073		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000410054	ENST00000478804		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000410054	ENST00000404807		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000409606	ENST00000407073		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000409606	ENST00000478804		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000409606	ENST00000404807		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000443537	ENST00000407073		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000443537	ENST00000478804		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000443537	ENST00000404807		ChiTaRS3.1			BQ353800	R3HDM1	chr2	136319493	-	MBD5	chr2	149162770	-
intron-intron	ENST00000249064	ENST00000423113		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000249064	ENST00000396033		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000249064	ENST00000302278		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000249064	ENST00000374956		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000249064	ENST00000484088		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000448492	ENST00000423113		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000448492	ENST00000396033		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000448492	ENST00000302278		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000448492	ENST00000374956		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000448492	ENST00000484088		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000421503	ENST00000423113		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000421503	ENST00000396033		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000421503	ENST00000302278		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000421503	ENST00000374956		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000421503	ENST00000484088		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000443309	ENST00000423113		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000443309	ENST00000396033		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000443309	ENST00000302278		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000443309	ENST00000374956		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-intron	ENST00000443309	ENST00000484088		ChiTaRS3.1			BE161800	CCDC117	chr22	29175453	-	ITGB1	chr10	33226214	-
intron-5UTR	ENST00000280886	ENST00000471694		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-3UTR	ENST00000280886	ENST00000355354		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-intron	ENST00000280886	ENST00000361309		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-5UTR	ENST00000381496	ENST00000471694		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-3UTR	ENST00000381496	ENST00000355354		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-intron	ENST00000381496	ENST00000361309		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-5UTR	ENST00000540204	ENST00000471694		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-3UTR	ENST00000540204	ENST00000355354		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
intron-intron	ENST00000540204	ENST00000361309		ChiTaRS3.1			AW386080	DIP2C	chr10	713419	-	CD47	chr3	107765069	-
In-frame	ENST00000598441	ENST00000598441		ChiTaRS3.1			BG958620	SNRNP70	chr19	49589746	-	SNRNP70	chr19	49611202	-
In-frame	ENST00000598441	ENST00000221448		ChiTaRS3.1			BG958620	SNRNP70	chr19	49589746	-	SNRNP70	chr19	49611202	-
In-frame	ENST00000221448	ENST00000598441		ChiTaRS3.1			BG958620	SNRNP70	chr19	49589746	-	SNRNP70	chr19	49611202	-
In-frame	ENST00000221448	ENST00000221448		ChiTaRS3.1			BG958620	SNRNP70	chr19	49589746	-	SNRNP70	chr19	49611202	-
In-frame	ENST00000356577	ENST00000263398		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000526025		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000449691		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000360158		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000415148		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000437706		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000433354		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000428726		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000526669		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000433892		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000278386		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000434472		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000352818		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000356577	ENST00000528922		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
In-frame	ENST00000290239	ENST00000263398		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000526025		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000449691		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000360158		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000415148		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000437706		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000433354		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000428726		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000526669		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000433892		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000278386		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000434472		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000352818		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000290239	ENST00000528922		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
In-frame	ENST00000381692	ENST00000263398		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000526025		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000449691		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000360158		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000415148		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000437706		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000433354		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000428726		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000526669		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000433892		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000278386		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000434472		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000352818		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381692	ENST00000528922		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
In-frame	ENST00000300278	ENST00000263398		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000526025		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000449691		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000360158		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000415148		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000437706		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000433354		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000428726		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000526669		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000433892		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000278386		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000434472		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000352818		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000300278	ENST00000528922		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
In-frame	ENST00000381679	ENST00000263398		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000526025		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000449691		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000360158		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000415148		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000437706		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000433354		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000428726		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000526669		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000433892		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000278386		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000434472		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000352818		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
5CDS-intron	ENST00000381679	ENST00000528922		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-3CDS	ENST00000470533	ENST00000263398		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000526025		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000449691		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000360158		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000415148		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000437706		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000433354		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000428726		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000526669		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000433892		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000278386		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000434472		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000352818		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000470533	ENST00000528922		ChiTaRS3.1			BE695450	SON	chr21	34929527	-	CD44	chr11	35250784	+
intron-intron	ENST00000373203	ENST00000361731		ChiTaRS3.1			DA620280	ENG	chr9	130616838	-	SFT2D1	chr6	166747222	-
intron-intron	ENST00000373203	ENST00000487841		ChiTaRS3.1			DA620280	ENG	chr9	130616838	-	SFT2D1	chr6	166747222	-
intron-intron	ENST00000344849	ENST00000361731		ChiTaRS3.1			DA620280	ENG	chr9	130616838	-	SFT2D1	chr6	166747222	-
intron-intron	ENST00000344849	ENST00000487841		ChiTaRS3.1			DA620280	ENG	chr9	130616838	-	SFT2D1	chr6	166747222	-
intron-intron	ENST00000480266	ENST00000361731		ChiTaRS3.1			DA620280	ENG	chr9	130616838	-	SFT2D1	chr6	166747222	-
intron-intron	ENST00000480266	ENST00000487841		ChiTaRS3.1			DA620280	ENG	chr9	130616838	-	SFT2D1	chr6	166747222	-
3UTR-3UTR	ENST00000307602	ENST00000307602		ChiTaRS3.1			AI825480	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
3UTR-intron	ENST00000307602	ENST00000524839		ChiTaRS3.1			AI825480	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
intron-3UTR	ENST00000524839	ENST00000307602		ChiTaRS3.1			AI825480	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
intron-intron	ENST00000524839	ENST00000524839		ChiTaRS3.1			AI825480	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
3UTR-3CDS	ENST00000471231	ENST00000471231		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000338343		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000562319		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000380310		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000565690		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000471231		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000338343		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000562319		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000380310		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000565690		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000471231		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000338343		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000562319		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000380310		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000565690		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000471231		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000338343		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000562319		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000380310		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000565690		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000471231		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000338343		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000562319		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000380310		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000565690		ChiTaRS3.1			AV730110	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-intron	ENST00000379933	ENST00000338368		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000379933	ENST00000314191		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000379933	ENST00000523565		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000379938	ENST00000338368		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000379938	ENST00000314191		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000379938	ENST00000523565		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000334984	ENST00000338368		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000334984	ENST00000314191		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000334984	ENST00000523565		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000349384	ENST00000338368		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000349384	ENST00000314191		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-intron	ENST00000349384	ENST00000523565		ChiTaRS3.1			CV412890	RREB1	chr6	7150362	+	PRKDC	chr8	48699887	-
intron-3UTR	ENST00000320389	ENST00000320389		ChiTaRS3.1			AJ251620	KIF1A	chr2	241653331	+	KIF1A	chr2	241653891	-
intron-3UTR	ENST00000320389	ENST00000498729		ChiTaRS3.1			AJ251620	KIF1A	chr2	241653331	+	KIF1A	chr2	241653891	-
intron-3UTR	ENST00000498729	ENST00000320389		ChiTaRS3.1			AJ251620	KIF1A	chr2	241653331	+	KIF1A	chr2	241653891	-
intron-3UTR	ENST00000498729	ENST00000498729		ChiTaRS3.1			AJ251620	KIF1A	chr2	241653331	+	KIF1A	chr2	241653891	-
intron-3UTR	ENST00000354452	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000354452	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000356073	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000356073	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000568673	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000568673	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000457482	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000457482	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000543082	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000543082	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000540999	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000540999	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000537578	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000537578	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000564999	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000564999	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000568740	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000568740	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000537856	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000537856	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000544241	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000544241	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000561992	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000561992	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000561831	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000561831	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000565018	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000565018	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000570287	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000570287	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000564228	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000564228	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000567880	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000567880	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000566286	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000566286	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000566279	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000566279	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000564403	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000564403	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000398339	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000398339	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000570177	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000570177	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000563760	ENST00000409871		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
intron-3UTR	ENST00000563760	ENST00000343936		ChiTaRS3.1			BE161960	TCF4	chr18	52893027	+	ZC3H6	chr2	113096787	+
3UTR-3UTR	ENST00000468643	ENST00000468643		ChiTaRS3.1			AA484740	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000468643	ENST00000400577		ChiTaRS3.1			AA484740	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000400577	ENST00000468643		ChiTaRS3.1			AA484740	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000400577	ENST00000400577		ChiTaRS3.1			AA484740	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3CDS	ENST00000529443	ENST00000318562		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000529443	ENST00000533256		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000529443	ENST00000530636		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000529443	ENST00000526198		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3UTR	ENST00000529443	ENST00000534449		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000299106	ENST00000318562		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000299106	ENST00000533256		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000299106	ENST00000530636		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000299106	ENST00000526198		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3UTR	ENST00000299106	ENST00000534449		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000441717	ENST00000318562		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000441717	ENST00000533256		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000441717	ENST00000530636		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3CDS	ENST00000441717	ENST00000526198		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
3UTR-3UTR	ENST00000441717	ENST00000534449		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
intron-3CDS	ENST00000524969	ENST00000318562		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
intron-3CDS	ENST00000524969	ENST00000533256		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
intron-3CDS	ENST00000524969	ENST00000530636		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
intron-3CDS	ENST00000524969	ENST00000526198		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
intron-3UTR	ENST00000524969	ENST00000534449		ChiTaRS3.1			T35070	JAM3	chr11	134019787	-	EPS8L2	chr11	726684	+
intron-intron	ENST00000222690	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000222690	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000222690	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000437072	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000437072	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000349299	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000349299	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000308153	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000308153	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000350771	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000350771	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000381124	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000381124	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000521529	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000521529	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000502732		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000367623		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000507173		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000511413		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000392043		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000408940		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-5UTR	ENST00000446531	ENST00000344730		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000512653		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
intron-intron	ENST00000446531	ENST00000504405		ChiTaRS3.1			DB293530	H2AFV	chr7	44873915	-	ABL2	chr1	179112209	-
3UTR-intron	ENST00000493902	ENST00000331817		ChiTaRS3.1			CB121190	STX4	chr16	31051101	-	KRT7	chr12	52633336	+
3UTR-intron	ENST00000493902	ENST00000552322		ChiTaRS3.1			CB121190	STX4	chr16	31051101	-	KRT7	chr12	52633336	+
5CDS-intron	ENST00000394998	ENST00000331817		ChiTaRS3.1			CB121190	STX4	chr16	31051101	-	KRT7	chr12	52633336	+
5CDS-intron	ENST00000394998	ENST00000552322		ChiTaRS3.1			CB121190	STX4	chr16	31051101	-	KRT7	chr12	52633336	+
5CDS-intron	ENST00000313843	ENST00000331817		ChiTaRS3.1			CB121190	STX4	chr16	31051101	-	KRT7	chr12	52633336	+
5CDS-intron	ENST00000313843	ENST00000552322		ChiTaRS3.1			CB121190	STX4	chr16	31051101	-	KRT7	chr12	52633336	+
intron-intron	ENST00000243997	ENST00000429029		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000243997	ENST00000262177		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000243997	ENST00000452797		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-intron	ENST00000243997	ENST00000443280		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000243997	ENST00000494267		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-intron	ENST00000395663	ENST00000429029		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000395663	ENST00000262177		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000395663	ENST00000452797		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-intron	ENST00000395663	ENST00000443280		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000395663	ENST00000494267		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-intron	ENST00000395659	ENST00000429029		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000395659	ENST00000262177		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000395659	ENST00000452797		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-intron	ENST00000395659	ENST00000443280		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
intron-3UTR	ENST00000395659	ENST00000494267		ChiTaRS3.1			AV712800	ATP5E	chr20	57607296	-	DNAJB6	chr7	157209259	+
3UTR-intron	ENST00000264645	ENST00000443891		ChiTaRS3.1			BF750860	CASC3	chr17	38328074	-	CTDSP1	chr2	219270592	-
3UTR-3UTR	ENST00000264645	ENST00000273062		ChiTaRS3.1			BF750860	CASC3	chr17	38328074	-	CTDSP1	chr2	219270592	-
3UTR-intron	ENST00000264645	ENST00000488627		ChiTaRS3.1			BF750860	CASC3	chr17	38328074	-	CTDSP1	chr2	219270592	-
intron-intron	ENST00000328252	ENST00000328252		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000328252	ENST00000534838		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000328252	ENST00000483254		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000534838	ENST00000328252		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000534838	ENST00000534838		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000534838	ENST00000483254		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000483254	ENST00000328252		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000483254	ENST00000534838		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000483254	ENST00000483254		ChiTaRS3.1			BF367810	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000355630	ENST00000355630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000355630	ENST00000396617		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000355630	ENST00000402042		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000355630	ENST00000466278		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000355630	ENST00000407029		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000355630	ENST00000402630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000396617	ENST00000355630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000396617	ENST00000396617		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000396617	ENST00000402042		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000396617	ENST00000466278		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000396617	ENST00000407029		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000396617	ENST00000402630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402042	ENST00000355630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402042	ENST00000396617		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402042	ENST00000402042		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402042	ENST00000466278		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402042	ENST00000407029		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402042	ENST00000402630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000466278	ENST00000355630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000466278	ENST00000396617		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000466278	ENST00000402042		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000466278	ENST00000466278		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000466278	ENST00000407029		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000466278	ENST00000402630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000407029	ENST00000355630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000407029	ENST00000396617		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000407029	ENST00000402042		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000407029	ENST00000466278		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000407029	ENST00000407029		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000407029	ENST00000402630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402630	ENST00000355630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402630	ENST00000396617		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402630	ENST00000402042		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402630	ENST00000466278		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402630	ENST00000407029		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000402630	ENST00000402630		ChiTaRS3.1			BU674920	MKL1	chr22	40982618	+	MKL1	chr22	40982715	-
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807840	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
5UTR-5UTR	ENST00000264363	ENST00000264811		ChiTaRS3.1			U47050	NDST4	chr4	116034598	-	TRPC3	chr4	122854200	-
5UTR-5UTR	ENST00000264363	ENST00000379645		ChiTaRS3.1			U47050	NDST4	chr4	116034598	-	TRPC3	chr4	122854200	-
5UTR-intron	ENST00000264363	ENST00000513531		ChiTaRS3.1			U47050	NDST4	chr4	116034598	-	TRPC3	chr4	122854200	-
intron-intron	ENST00000262241	ENST00000262241		ChiTaRS3.1			AW801700	RCOR1	chr14	103120578	-	RCOR1	chr14	103121971	-
intron-intron	ENST00000262241	ENST00000570597		ChiTaRS3.1			AW801700	RCOR1	chr14	103120578	-	RCOR1	chr14	103121971	-
intron-intron	ENST00000570597	ENST00000262241		ChiTaRS3.1			AW801700	RCOR1	chr14	103120578	-	RCOR1	chr14	103121971	-
intron-intron	ENST00000570597	ENST00000570597		ChiTaRS3.1			AW801700	RCOR1	chr14	103120578	-	RCOR1	chr14	103121971	-
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			EU669177	KMT2A	chr11	118353622	+	MLLT3	chr9	20622554	-
intron-intron	ENST00000377669	ENST00000377669		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377669	ENST00000377666		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377669	ENST00000472022		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377666	ENST00000377669		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377666	ENST00000377666		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377666	ENST00000472022		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000472022	ENST00000377669		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000472022	ENST00000377666		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000472022	ENST00000472022		ChiTaRS3.1			BE073840	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000541428	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000541428	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379454	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000523897	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522919	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000356457	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000518068	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517903	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000445642	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517847	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522835	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517856	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000389204	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000522603	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000379449	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000541428		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000379454		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000523897		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000522919		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000356457		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000518068		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000517903		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000445642		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000517847		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000522835		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000517856		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000389204		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000522603		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000379449		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-intron	ENST00000517661	ENST00000517661		ChiTaRS3.1			BF989500	ASPH	chr8	62621385	+	ASPH	chr8	62621425	-
intron-3CDS	ENST00000320934	ENST00000320934		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-3CDS	ENST00000320934	ENST00000540028		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-intron	ENST00000320934	ENST00000529458		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-3CDS	ENST00000540028	ENST00000320934		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-3CDS	ENST00000540028	ENST00000540028		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-intron	ENST00000540028	ENST00000529458		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-3CDS	ENST00000529458	ENST00000320934		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-3CDS	ENST00000529458	ENST00000540028		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
intron-intron	ENST00000529458	ENST00000529458		ChiTaRS3.1			BP201810	PCSK7	chr11	117076121	-	PCSK7	chr11	117089843	-
5CDS-5UTR	ENST00000370189	ENST00000393078		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-3UTR	ENST00000370189	ENST00000485588		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000370189	ENST00000393080		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000370189	ENST00000467132		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-intron	ENST00000370189	ENST00000482740		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000529992	ENST00000393078		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-3UTR	ENST00000529992	ENST00000485588		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000529992	ENST00000393080		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000529992	ENST00000467132		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-intron	ENST00000529992	ENST00000482740		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000306121	ENST00000393078		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-3UTR	ENST00000306121	ENST00000485588		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000306121	ENST00000393080		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-5UTR	ENST00000306121	ENST00000467132		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
5CDS-intron	ENST00000306121	ENST00000482740		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
intron-5UTR	ENST00000473868	ENST00000393078		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
intron-3UTR	ENST00000473868	ENST00000485588		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
intron-5UTR	ENST00000473868	ENST00000393080		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
intron-5UTR	ENST00000473868	ENST00000467132		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
intron-intron	ENST00000473868	ENST00000482740		ChiTaRS3.1			BC000620	SNX7	chr1	99167386	-	SERPINA3	chr14	95078743	+
intron-intron	ENST00000539054	ENST00000283147		ChiTaRS3.1			BF924220	TXNDC5	chr6	7882394	+	BMP6	chr6	7881967	-
intron-intron	ENST00000379757	ENST00000283147		ChiTaRS3.1			BF924220	TXNDC5	chr6	7882394	+	BMP6	chr6	7881967	-
intron-intron	ENST00000473453	ENST00000283147		ChiTaRS3.1			BF924220	TXNDC5	chr6	7882394	+	BMP6	chr6	7881967	-
intron-3UTR	ENST00000355349	ENST00000323798		ChiTaRS3.1			AI312670	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-3UTR	ENST00000355349	ENST00000263276		ChiTaRS3.1			AI312670	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000541188		ChiTaRS3.1			AI312670	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000544287		ChiTaRS3.1			AI312670	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000540532		ChiTaRS3.1			AI312670	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000457974		ChiTaRS3.1			AI312670	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
3UTR-intron	ENST00000371873	ENST00000371873		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
3UTR-intron	ENST00000371873	ENST00000450808		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
3UTR-intron	ENST00000371873	ENST00000471289		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
intron-intron	ENST00000450808	ENST00000371873		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
intron-intron	ENST00000450808	ENST00000450808		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
intron-intron	ENST00000450808	ENST00000471289		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
intron-intron	ENST00000471289	ENST00000371873		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
intron-intron	ENST00000471289	ENST00000450808		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
intron-intron	ENST00000471289	ENST00000471289		ChiTaRS3.1			AA652040	CMPK1	chr1	47844400	+	CMPK1	chr1	47844507	-
5CDS-5UTR	ENST00000263036	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000263036	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378764	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378764	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
3UTR-5UTR	ENST00000482140	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
3UTR-5UTR	ENST00000482140	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378757	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378757	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378752	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378752	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378748	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378748	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378747	ENST00000358130		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
5CDS-5UTR	ENST00000378747	ENST00000491275		ChiTaRS3.1			BF812950	OPTN	chr10	13158300	-	HMGN5	chrX	80377092	-
3UTR-3CDS	ENST00000432069	ENST00000377869		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000432069	ENST00000220616		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000432069	ENST00000542445		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000432069	ENST00000519543		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-intron	ENST00000432069	ENST00000522523		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000564053	ENST00000377869		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000564053	ENST00000220616		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000564053	ENST00000542445		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000564053	ENST00000519543		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-intron	ENST00000564053	ENST00000522523		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000568199	ENST00000377869		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000568199	ENST00000220616		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000568199	ENST00000542445		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-3CDS	ENST00000568199	ENST00000519543		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-intron	ENST00000568199	ENST00000522523		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000268605	ENST00000377869		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000268605	ENST00000220616		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000268605	ENST00000542445		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000268605	ENST00000519543		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-intron	ENST00000268605	ENST00000522523		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000568146	ENST00000377869		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000568146	ENST00000220616		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000568146	ENST00000542445		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-3CDS	ENST00000568146	ENST00000519543		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
3UTR-intron	ENST00000568146	ENST00000522523		ChiTaRS3.1			BG993810	NOL3	chr16	67209572	+	TG	chr8	134145771	-
intron-intron	ENST00000382148	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382148	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382148	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382148	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382148	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382148	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382148	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000447367	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382150	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382152	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000509207	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000382149	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000382148		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000447367		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000382150		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000382152		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000509207		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000382149		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-intron	ENST00000359001	ENST00000359001		ChiTaRS3.1			AY072610	KCNIP4	chr4	21848599	+	KCNIP4	chr4	21849324	-
intron-3CDS	ENST00000300134	ENST00000300134		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000300134	ENST00000538913		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000300134	ENST00000543873		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000300134	ENST00000556155		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000300134	ENST00000537215		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000300134	ENST00000454075		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000538913	ENST00000300134		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000538913	ENST00000538913		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000538913	ENST00000543873		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000538913	ENST00000556155		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000538913	ENST00000537215		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000538913	ENST00000454075		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000543873	ENST00000300134		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000543873	ENST00000538913		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000543873	ENST00000543873		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000543873	ENST00000556155		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000543873	ENST00000537215		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000543873	ENST00000454075		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000556155	ENST00000300134		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000556155	ENST00000538913		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000556155	ENST00000543873		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000556155	ENST00000556155		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000556155	ENST00000537215		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000556155	ENST00000454075		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000537215	ENST00000300134		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000537215	ENST00000538913		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000537215	ENST00000543873		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000537215	ENST00000556155		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000537215	ENST00000537215		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000537215	ENST00000454075		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000454075	ENST00000300134		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000454075	ENST00000538913		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000454075	ENST00000543873		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000454075	ENST00000556155		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000454075	ENST00000537215		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
intron-3CDS	ENST00000454075	ENST00000454075		ChiTaRS3.1			AW848250	STAT6	chr12	57490324	+	STAT6	chr12	57490736	-
3UTR-3UTR	ENST00000258418	ENST00000258418		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000410084		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000409788		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000484398		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000410084	ENST00000258418		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000410084		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000409788		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000484398		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000409788	ENST00000258418		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000410084		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000409788		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000484398		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000484398	ENST00000258418		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000410084		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000409788		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000484398		ChiTaRS3.1			AF134480	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000397786	ENST00000397786		ChiTaRS3.1			CV351040	MED13	chr17	60084965	+	MED13	chr17	60082557	+
intron-intron	ENST00000397786	ENST00000580896		ChiTaRS3.1			CV351040	MED13	chr17	60084965	+	MED13	chr17	60082557	+
intron-intron	ENST00000580896	ENST00000397786		ChiTaRS3.1			CV351040	MED13	chr17	60084965	+	MED13	chr17	60082557	+
intron-intron	ENST00000580896	ENST00000580896		ChiTaRS3.1			CV351040	MED13	chr17	60084965	+	MED13	chr17	60082557	+
intron-3CDS	ENST00000543523	ENST00000304636		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000543523	ENST00000317840		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000281172	ENST00000304636		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000281172	ENST00000317840		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000543612	ENST00000304636		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000543612	ENST00000317840		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000540613	ENST00000304636		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000540613	ENST00000317840		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000542903	ENST00000304636		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-3CDS	ENST00000542903	ENST00000317840		ChiTaRS3.1			BG959090	EPS8	chr12	15908649	+	COL3A1	chr2	189873773	-
intron-intron	ENST00000380682	ENST00000338252		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000508830		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000359176		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000395812		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000325674		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000395813		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000510756		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000508608		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000341926		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000511049		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000309190		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000509903		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000511782		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000504465		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000348386		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000508579		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-intron	ENST00000380682	ENST00000515663		ChiTaRS3.1			BI024000	FRMPD4	chrX	12719504	-	CAST	chr5	96101850	-
intron-3CDS	ENST00000263707	ENST00000263707		ChiTaRS3.1			AW997170	TFCP2L1	chr2	121995228	+	TFCP2L1	chr2	121983184	-
Frame-shit	ENST00000295709	ENST00000295709		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000295709	ENST00000392106		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000295709	ENST00000392105		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000295709	ENST00000440309		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392106	ENST00000295709		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392106	ENST00000392106		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392106	ENST00000392105		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392106	ENST00000440309		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392105	ENST00000295709		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392105	ENST00000392106		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392105	ENST00000392105		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000392105	ENST00000440309		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000440309	ENST00000295709		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000440309	ENST00000392106		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000440309	ENST00000392105		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
Frame-shit	ENST00000440309	ENST00000440309		ChiTaRS3.1			BG991610	STK36	chr2	219564070	+	STK36	chr2	219540786	+
intron-intron	ENST00000348943	ENST00000262570		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000348943	ENST00000448878		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000348943	ENST00000476546		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000348943	ENST00000542753		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000325495	ENST00000262570		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000325495	ENST00000448878		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000325495	ENST00000476546		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000325495	ENST00000542753		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000602219	ENST00000262570		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000602219	ENST00000448878		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000602219	ENST00000476546		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000602219	ENST00000542753		ChiTaRS3.1			BF336220	HNRNPM	chr19	8514307	-	CHCHD3	chr7	132747386	+
intron-intron	ENST00000292599	ENST00000393078		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000292599	ENST00000485588		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000292599	ENST00000393080		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000292599	ENST00000467132		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000292599	ENST00000482740		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000503050	ENST00000393078		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000503050	ENST00000485588		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000503050	ENST00000393080		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000503050	ENST00000467132		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-intron	ENST00000503050	ENST00000482740		ChiTaRS3.1			EB385820	MAML1	chr5	179193915	+	SERPINA3	chr14	95089018	+
intron-5UTR	ENST00000477496	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000477496	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000477496	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000477496	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000460856	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000460856	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000460856	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000460856	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000240874	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000240874	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000240874	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000240874	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000360013	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000360013	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000360013	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000360013	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000393496	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000393496	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000393496	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000393496	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000291478	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000291478	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000291478	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000291478	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000428018	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000428018	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000428018	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000428018	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000459915	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000459915	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000459915	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000459915	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000462213	ENST00000359651		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000462213	ENST00000367284		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-5UTR	ENST00000462213	ENST00000367283		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
intron-3UTR	ENST00000462213	ENST00000495848		ChiTaRS3.1			AU120380	KALRN	chr3	123758973	+	ELF3	chr1	201979752	+
5CDS-intron	ENST00000534358	ENST00000528395		ChiTaRS3.1			GU353068	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
5CDS-intron	ENST00000389506	ENST00000528395		ChiTaRS3.1			GU353068	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
5CDS-intron	ENST00000354520	ENST00000528395		ChiTaRS3.1			GU353068	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
3UTR-intron	ENST00000420751	ENST00000528395		ChiTaRS3.1			GU353068	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
intron-5UTR	ENST00000373129	ENST00000373129		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373129	ENST00000373130		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373129	ENST00000373132		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373129	ENST00000482458		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-intron	ENST00000373129	ENST00000359297		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373130	ENST00000373129		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373130	ENST00000373130		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373130	ENST00000373132		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373130	ENST00000482458		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-intron	ENST00000373130	ENST00000359297		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373132	ENST00000373129		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373132	ENST00000373130		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373132	ENST00000373132		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000373132	ENST00000482458		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-intron	ENST00000373132	ENST00000359297		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000482458	ENST00000373129		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000482458	ENST00000373130		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000482458	ENST00000373132		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000482458	ENST00000482458		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-intron	ENST00000482458	ENST00000359297		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000359297	ENST00000373129		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000359297	ENST00000373130		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000359297	ENST00000373132		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-5UTR	ENST00000359297	ENST00000482458		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
intron-intron	ENST00000359297	ENST00000359297		ChiTaRS3.1			DA570690	STK40	chr1	36806561	-	STK40	chr1	36851457	-
5CDS-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
3UTR-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
3UTR-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
3UTR-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
3UTR-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050775	KMT2A	chr11	118354935	+	AFF1	chr4	88015814	+
intron-intron	ENST00000422424	ENST00000422424		ChiTaRS3.1			CB250450	FAM96B	chr16	66966699	+	FAM96B	chr16	66968006	-
intron-intron	ENST00000305249	ENST00000305249		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000305249	ENST00000409848		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000305249	ENST00000497764		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000409848	ENST00000305249		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000409848	ENST00000409848		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000409848	ENST00000497764		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000497764	ENST00000305249		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000497764	ENST00000409848		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000497764	ENST00000497764		ChiTaRS3.1			W28380	TACR1	chr2	75382550	-	TACR1	chr2	75382163	+
intron-intron	ENST00000267615	ENST00000486442		ChiTaRS3.1			BI053080	ITPK1	chr14	93536152	+	KLHL29	chr2	23750350	+
intron-intron	ENST00000354313	ENST00000486442		ChiTaRS3.1			BI053080	ITPK1	chr14	93536152	+	KLHL29	chr2	23750350	+
intron-intron	ENST00000556603	ENST00000486442		ChiTaRS3.1			BI053080	ITPK1	chr14	93536152	+	KLHL29	chr2	23750350	+
intron-intron	ENST00000555495	ENST00000486442		ChiTaRS3.1			BI053080	ITPK1	chr14	93536152	+	KLHL29	chr2	23750350	+
intron-intron	ENST00000556954	ENST00000486442		ChiTaRS3.1			BI053080	ITPK1	chr14	93536152	+	KLHL29	chr2	23750350	+
intron-intron	ENST00000560302	ENST00000560302		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560302	ENST00000394518		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560302	ENST00000361243		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560302	ENST00000560579		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560302	ENST00000394510		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394518	ENST00000560302		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394518	ENST00000394518		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394518	ENST00000361243		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394518	ENST00000560579		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394518	ENST00000394510		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000361243	ENST00000560302		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000361243	ENST00000394518		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000361243	ENST00000361243		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000361243	ENST00000560579		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000361243	ENST00000394510		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560579	ENST00000560302		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560579	ENST00000394518		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560579	ENST00000361243		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560579	ENST00000560579		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000560579	ENST00000394510		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394510	ENST00000560302		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394510	ENST00000394518		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394510	ENST00000361243		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394510	ENST00000560579		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000394510	ENST00000394510		ChiTaRS3.1			AI949560	AKAP13	chr15	86207794	-	AKAP13	chr15	86253876	-
intron-intron	ENST00000269228	ENST00000269228		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000269228	ENST00000412552		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000269228	ENST00000540608		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000412552	ENST00000269228		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000412552	ENST00000412552		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000412552	ENST00000540608		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000540608	ENST00000269228		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000540608	ENST00000412552		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
intron-intron	ENST00000540608	ENST00000540608		ChiTaRS3.1			AW855630	NPC1	chr18	21137298	+	NPC1	chr18	21126866	+
3UTR-3UTR	ENST00000374358	ENST00000374358		ChiTaRS3.1			C75640	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
3UTR-intron	ENST00000374358	ENST00000480937		ChiTaRS3.1			C75640	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-3UTR	ENST00000480937	ENST00000374358		ChiTaRS3.1			C75640	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-intron	ENST00000480937	ENST00000480937		ChiTaRS3.1			C75640	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-intron	ENST00000286657	ENST00000380121		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000504114		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000357505		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000399396		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000446957		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000286657	ENST00000267068		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000380121		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000504114		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000357505		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000399396		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000446957		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000505193	ENST00000267068		ChiTaRS3.1			BI016250	ADAMTS3	chr4	73284970	+	N4BP2L2	chr13	33091994	+
5CDS-3UTR	ENST00000398606	ENST00000337318		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
5CDS-intron	ENST00000398606	ENST00000392754		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
5CDS-intron	ENST00000398606	ENST00000280780		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
intron-3UTR	ENST00000398603	ENST00000337318		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
intron-intron	ENST00000398603	ENST00000392754		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
intron-intron	ENST00000398603	ENST00000280780		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
3UTR-3UTR	ENST00000498765	ENST00000337318		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
3UTR-intron	ENST00000498765	ENST00000392754		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
3UTR-intron	ENST00000498765	ENST00000280780		ChiTaRS3.1			AW263990	GSTP1	chr11	67353584	-	FAM53B	chr10	126310197	+
intron-intron	ENST00000251076	ENST00000330317		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000251076	ENST00000492742		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000251076	ENST00000398208		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000543779	ENST00000330317		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000543779	ENST00000492742		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000543779	ENST00000398208		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000449909	ENST00000330317		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000449909	ENST00000492742		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000449909	ENST00000398208		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000560421	ENST00000330317		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000560421	ENST00000492742		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
intron-intron	ENST00000560421	ENST00000398208		ChiTaRS3.1			CV365520	DMXL2	chr15	51753819	+	WDR4	chr21	44290868	+
3UTR-intron	ENST00000254976	ENST00000533871		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000254976	ENST00000321016		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000254976	ENST00000564347		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000304886	ENST00000533871		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000304886	ENST00000321016		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000304886	ENST00000564347		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000495883	ENST00000533871		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000495883	ENST00000321016		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
3UTR-intron	ENST00000495883	ENST00000564347		ChiTaRS3.1			BQ340310	SNAP25	chr20	10287519	-	IGSF9B	chr11	133802427	+
intron-intron	ENST00000487990	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000487990	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000399272	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000489903	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000313806	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000443408	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000482533	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000481448	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381132	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000381135	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000487990		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000399272		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000489903		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000313806		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000443408		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000482533		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000481448		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000381132		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000381135		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000492600	ENST00000492600		ChiTaRS3.1			BF881160	RCAN1	chr21	35895904	+	RCAN1	chr21	35892998	+
intron-intron	ENST00000421865	ENST00000421865		ChiTaRS3.1			BI491110	LAMA2	chr6	129525486	-	LAMA2	chr6	129525441	+
intron-intron	ENST00000421865	ENST00000498257		ChiTaRS3.1			BI491110	LAMA2	chr6	129525486	-	LAMA2	chr6	129525441	+
intron-intron	ENST00000498257	ENST00000421865		ChiTaRS3.1			BI491110	LAMA2	chr6	129525486	-	LAMA2	chr6	129525441	+
intron-intron	ENST00000498257	ENST00000498257		ChiTaRS3.1			BI491110	LAMA2	chr6	129525486	-	LAMA2	chr6	129525441	+
intron-intron	ENST00000392521	ENST00000219169		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000392521	ENST00000569436		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000392521	ENST00000568396		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000261833	ENST00000219169		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000261833	ENST00000569436		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000261833	ENST00000568396		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000537607	ENST00000219169		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000537607	ENST00000569436		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-intron	ENST00000537607	ENST00000568396		ChiTaRS3.1			AI590610	CIT	chr12	120220235	+	NUTF2	chr16	67891149	-
intron-3UTR	ENST00000341516	ENST00000272102		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000341516	ENST00000540651		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-intron	ENST00000341516	ENST00000478424		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000341516	ENST00000541182		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000554215	ENST00000272102		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000554215	ENST00000540651		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-intron	ENST00000554215	ENST00000478424		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000554215	ENST00000541182		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000556847	ENST00000272102		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000556847	ENST00000540651		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-intron	ENST00000556847	ENST00000478424		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000556847	ENST00000541182		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000557386	ENST00000272102		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000557386	ENST00000540651		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-intron	ENST00000557386	ENST00000478424		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000557386	ENST00000541182		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000389997	ENST00000272102		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000389997	ENST00000540651		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-intron	ENST00000389997	ENST00000478424		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000389997	ENST00000541182		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000553293	ENST00000272102		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000553293	ENST00000540651		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-intron	ENST00000553293	ENST00000478424		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3UTR	ENST00000553293	ENST00000541182		ChiTaRS3.1			W94280	DCAF5	chr14	69518853	-	ARF1	chr1	228286629	+
intron-3CDS	ENST00000592889	ENST00000372097		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592889	ENST00000372095		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592889	ENST00000372099		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592889	ENST00000372108		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592889	ENST00000342018		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592889	ENST00000485692		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-3CDS	ENST00000588992	ENST00000372097		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000588992	ENST00000372095		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000588992	ENST00000372099		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000588992	ENST00000372108		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000588992	ENST00000342018		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000588992	ENST00000485692		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-3CDS	ENST00000344990	ENST00000372097		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000344990	ENST00000372095		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000344990	ENST00000372099		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000344990	ENST00000372108		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000344990	ENST00000342018		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000344990	ENST00000485692		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-3CDS	ENST00000246532	ENST00000372097		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000246532	ENST00000372095		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000246532	ENST00000372099		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000246532	ENST00000372108		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000246532	ENST00000342018		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000246532	ENST00000485692		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-3CDS	ENST00000592537	ENST00000372097		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592537	ENST00000372095		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592537	ENST00000372099		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592537	ENST00000372108		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592537	ENST00000342018		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000592537	ENST00000485692		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-3CDS	ENST00000587101	ENST00000372097		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000587101	ENST00000372095		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000587101	ENST00000372099		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000587101	ENST00000372108		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000587101	ENST00000342018		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
intron-intron	ENST00000587101	ENST00000485692		ChiTaRS3.1			AI571350	IGFLR1	chr19	36234783	+	GTF3C5	chr9	135931469	-
5CDS-3UTR	ENST00000285848	ENST00000361354		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000285848	ENST00000360982		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-intron	ENST00000285848	ENST00000478449		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000604262	ENST00000361354		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000604262	ENST00000360982		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-intron	ENST00000604262	ENST00000478449		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000412791	ENST00000361354		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000412791	ENST00000360982		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-intron	ENST00000412791	ENST00000478449		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000358043	ENST00000361354		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-3UTR	ENST00000358043	ENST00000360982		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
5CDS-intron	ENST00000358043	ENST00000478449		ChiTaRS3.1			N36260	OXA1L	chr14	23240686	-	NCKAP1	chr2	183790329	+
3UTR-3CDS	ENST00000558401	ENST00000558401		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-3CDS	ENST00000558401	ENST00000559916		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-3CDS	ENST00000558401	ENST00000544417		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-intron	ENST00000558401	ENST00000559220		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-3CDS	ENST00000559916	ENST00000558401		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-3CDS	ENST00000559916	ENST00000559916		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-3CDS	ENST00000559916	ENST00000544417		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-intron	ENST00000559916	ENST00000559220		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-3CDS	ENST00000544417	ENST00000558401		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-3CDS	ENST00000544417	ENST00000559916		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-3CDS	ENST00000544417	ENST00000544417		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-intron	ENST00000544417	ENST00000559220		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-3CDS	ENST00000559220	ENST00000558401		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-3CDS	ENST00000559220	ENST00000559916		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-3CDS	ENST00000559220	ENST00000544417		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
3UTR-intron	ENST00000559220	ENST00000559220		ChiTaRS3.1			BG900520	B2M	chr15	45010167	-	B2M	chr15	45007624	+
intron-intron	ENST00000441724	ENST00000262570		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000441724	ENST00000448878		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000441724	ENST00000476546		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000441724	ENST00000542753		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000262570		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000448878		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000476546		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000542753		ChiTaRS3.1			AA705080	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000532462	ENST00000405008		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000532462	ENST00000402114		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000532462	ENST00000394754		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000532462	ENST00000309827		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000532462	ENST00000394751		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000532462	ENST00000463040		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000544180	ENST00000405008		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000544180	ENST00000402114		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000544180	ENST00000394754		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000544180	ENST00000309827		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000544180	ENST00000394751		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000544180	ENST00000463040		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000216392	ENST00000405008		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000216392	ENST00000402114		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000216392	ENST00000394754		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000216392	ENST00000309827		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000216392	ENST00000394751		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
intron-intron	ENST00000216392	ENST00000463040		ChiTaRS3.1			AA147640	PYGL	chr14	51372197	+	STON1-GTF2A1L	chr2	48824707	+
3UTR-3UTR	ENST00000299413	ENST00000299413		ChiTaRS3.1			AA653900	TRIM44	chr11	35829760	+	TRIM44	chr11	35829658	-
3UTR-intron	ENST00000299413	ENST00000532066		ChiTaRS3.1			AA653900	TRIM44	chr11	35829760	+	TRIM44	chr11	35829658	-
intron-3UTR	ENST00000532066	ENST00000299413		ChiTaRS3.1			AA653900	TRIM44	chr11	35829760	+	TRIM44	chr11	35829658	-
intron-intron	ENST00000532066	ENST00000532066		ChiTaRS3.1			AA653900	TRIM44	chr11	35829760	+	TRIM44	chr11	35829658	-
5CDS-intron	ENST00000334956	ENST00000513247		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000334956	ENST00000316461		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000334956	ENST00000532583		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000539723	ENST00000513247		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000539723	ENST00000316461		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000539723	ENST00000532583		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000550549	ENST00000513247		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000550549	ENST00000316461		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000550549	ENST00000532583		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000538608	ENST00000513247		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000538608	ENST00000316461		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
5CDS-intron	ENST00000538608	ENST00000532583		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
intron-intron	ENST00000526746	ENST00000513247		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
intron-intron	ENST00000526746	ENST00000316461		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
intron-intron	ENST00000526746	ENST00000532583		ChiTaRS3.1			BQ371090	PARVA	chr11	12518059	-	TTC9C	chr11	62504653	+
intron-intron	ENST00000438796	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000438796	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000414675	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000414675	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000441090	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000441090	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000334859	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000334859	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000425562	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000425562	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000493726	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000493726	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000536618	ENST00000439174		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000536618	ENST00000541118		ChiTaRS3.1			AA482030	LRCH3	chr3	197599692	-	GNA13	chr17	63047750	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			AW901430	CDR1	chrX	139866825	+	CDR1	chrX	139865330	+
intron-intron	ENST00000592950	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000592950		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000585870		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000588726		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000590344		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000593246		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000590721		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000451495		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000586973		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000586464		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000588425		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000585582		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000411835		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000589840		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000429200		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000587596		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000591131		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000591300		ChiTaRS3.1			AK027740	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
In-frame	ENST00000262429	ENST00000369144		ChiTaRS3.1			BE841770	ATP2C2	chr16	84432115	-	EIF3A	chr10	120817711	+
In-frame	ENST00000262429	ENST00000541549		ChiTaRS3.1			BE841770	ATP2C2	chr16	84432115	-	EIF3A	chr10	120817711	+
In-frame	ENST00000416219	ENST00000369144		ChiTaRS3.1			BE841770	ATP2C2	chr16	84432115	-	EIF3A	chr10	120817711	+
In-frame	ENST00000416219	ENST00000541549		ChiTaRS3.1			BE841770	ATP2C2	chr16	84432115	-	EIF3A	chr10	120817711	+
intron-3CDS	ENST00000420010	ENST00000369144		ChiTaRS3.1			BE841770	ATP2C2	chr16	84432115	-	EIF3A	chr10	120817711	+
intron-3CDS	ENST00000420010	ENST00000541549		ChiTaRS3.1			BE841770	ATP2C2	chr16	84432115	-	EIF3A	chr10	120817711	+
3UTR-3UTR	ENST00000553645	ENST00000553645		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000311089		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554339		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554871		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000540526		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000311089	ENST00000553645		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000311089		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554339		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554871		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000540526		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554339	ENST00000553645		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000311089		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554339		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554871		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000540526		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554871	ENST00000553645		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000311089		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554339		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554871		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000540526		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000540526	ENST00000553645		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000311089		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554339		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554871		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000540526		ChiTaRS3.1			AI681060	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000541529	ENST00000541529		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000541529	ENST00000270776		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000541529	ENST00000538557		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-intron	ENST00000541529	ENST00000498356		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
3UTR-intron	ENST00000270776	ENST00000541529		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
3UTR-3UTR	ENST00000270776	ENST00000270776		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
3UTR-3UTR	ENST00000270776	ENST00000538557		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
3UTR-intron	ENST00000270776	ENST00000498356		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-intron	ENST00000538557	ENST00000541529		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000538557	ENST00000270776		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000538557	ENST00000538557		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-intron	ENST00000538557	ENST00000498356		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-intron	ENST00000498356	ENST00000541529		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000498356	ENST00000270776		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000498356	ENST00000538557		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-intron	ENST00000498356	ENST00000498356		ChiTaRS3.1			AA654860	PGD	chr1	10480144	+	PGD	chr1	10479926	-
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			CO245270	IGFBP5	chr2	217537657	-	IGFBP5	chr2	217538424	-
intron-3CDS	ENST00000311573	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000311573	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000311573	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000311573	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000311573	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368340	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368340	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368340	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368340	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000347088	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000347088	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000347088	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000347088	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000361831	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000361831	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000361831	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000361831	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000355499	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000355499	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000355499	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000355499	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000404643	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000404643	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000404643	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000404643	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000407221	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000407221	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000407221	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000407221	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000359205	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000359205	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000359205	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000359205	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000295566	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000295566	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000295566	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000295566	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368330	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368330	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368330	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368330	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000368339	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368339	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368339	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000368339	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000535662	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000535662	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000535662	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000535662	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000405763	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000405763	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000405763	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000405763	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000438245	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000438245	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000438245	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000438245	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000311573		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000368340		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000347088		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000361831		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000355499		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000404643		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000407221		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000359205		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000295566		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000368330		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000368339		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-3CDS	ENST00000476093	ENST00000535662		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000476093	ENST00000405763		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000476093	ENST00000438245		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
intron-intron	ENST00000476093	ENST00000476093		ChiTaRS3.1			BE677820	YY1AP1	chr1	155629580	+	YY1AP1	chr1	155630163	-
In-frame	ENST00000375441	ENST00000375441		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375441	ENST00000451881		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375441	ENST00000326335		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375441	ENST00000375440		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000375441	ENST00000463426		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000375441		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000451881		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000326335		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000375440		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000451881	ENST00000463426		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000375441		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000451881		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000326335		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000375440		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000326335	ENST00000463426		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000375441		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000451881		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000326335		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000375440		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000375440	ENST00000463426		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000375441		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000451881		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000326335		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000375440		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-intron	ENST00000463426	ENST00000463426		ChiTaRS3.1			BE925870	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000426216	ENST00000176763		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
5CDS-intron	ENST00000426216	ENST00000517775		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
5CDS-intron	ENST00000307671	ENST00000176763		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
5CDS-intron	ENST00000307671	ENST00000517775		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000586722	ENST00000176763		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000586722	ENST00000517775		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000591464	ENST00000176763		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000591464	ENST00000517775		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000458297	ENST00000176763		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000458297	ENST00000517775		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000543761	ENST00000176763		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-intron	ENST00000543761	ENST00000517775		ChiTaRS3.1			DB028190	ATP9B	chr18	77037194	+	STK10	chr5	171510239	+
intron-3UTR	ENST00000369536	ENST00000369536		ChiTaRS3.1			AA533240	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-intron	ENST00000369536	ENST00000497828		ChiTaRS3.1			AA533240	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-3UTR	ENST00000497828	ENST00000369536		ChiTaRS3.1			AA533240	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-intron	ENST00000497828	ENST00000497828		ChiTaRS3.1			AA533240	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-intron	ENST00000361490	ENST00000207157		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000361490	ENST00000369429		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000325103	ENST00000207157		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000325103	ENST00000369429		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000467246	ENST00000207157		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000467246	ENST00000369429		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000338546	ENST00000207157		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-intron	ENST00000338546	ENST00000369429		ChiTaRS3.1			BQ435040	HPS1	chr10	100177031	-	TBX15	chr1	119524790	+
intron-5UTR	ENST00000309134	ENST00000260385		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000309134	ENST00000338376		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-intron	ENST00000309134	ENST00000558560		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000534025	ENST00000260385		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000534025	ENST00000338376		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-intron	ENST00000534025	ENST00000558560		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000525069	ENST00000260385		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000525069	ENST00000338376		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-intron	ENST00000525069	ENST00000558560		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000528117	ENST00000260385		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-5UTR	ENST00000528117	ENST00000338376		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-intron	ENST00000528117	ENST00000558560		ChiTaRS3.1			BQ227990	TMEM9B	chr11	8969424	+	RMDN3	chr15	41047430	-
intron-3CDS	ENST00000426335	ENST00000426335		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000426335	ENST00000524782		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000426335	ENST00000395449		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000426335	ENST00000319543		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000426335	ENST00000419701		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000524782	ENST00000426335		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000524782	ENST00000524782		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000524782	ENST00000395449		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000524782	ENST00000319543		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000524782	ENST00000419701		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000395449	ENST00000426335		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000395449	ENST00000524782		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000395449	ENST00000395449		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000395449	ENST00000319543		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000395449	ENST00000419701		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000319543	ENST00000426335		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000319543	ENST00000524782		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000319543	ENST00000395449		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000319543	ENST00000319543		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000319543	ENST00000419701		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000419701	ENST00000426335		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-3CDS	ENST00000419701	ENST00000524782		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000419701	ENST00000395449		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000419701	ENST00000319543		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-5UTR	ENST00000419701	ENST00000419701		ChiTaRS3.1			BP194100	ARFGAP2	chr11	47186181	-	ARFGAP2	chr11	47188385	-
intron-intron	ENST00000453258	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000453258	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000453258	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000453258	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000453258	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000453258	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000453258	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000453258	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000453258	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000453258	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000453258	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000543964	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000543964	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000543964	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000543964	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000543964	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000543964	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000543964	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000543964	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000543964	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000543964	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000543964	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371207	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371207	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371207	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371207	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371207	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371207	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371207	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371207	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371207	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371207	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371207	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371203	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371203	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371203	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371203	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371203	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371203	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371203	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371203	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371203	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371203	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371203	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000539125	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000539125	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000539125	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000539125	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000539125	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000539125	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000539125	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000539125	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000539125	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000539125	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000539125	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371205	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371205	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371205	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371205	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371205	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371205	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000371205	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371205	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371205	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371205	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000371205	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000490659	ENST00000440768		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000490659	ENST00000359197		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000490659	ENST00000343574		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000490659	ENST00000331340		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000490659	ENST00000349824		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000490659	ENST00000357364		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-3UTR	ENST00000490659	ENST00000346667		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000490659	ENST00000438033		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000490659	ENST00000439701		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000490659	ENST00000413698		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000490659	ENST00000492782		ChiTaRS3.1			BF374130	ENTPD1	chr10	97553089	+	IKZF1	chr7	50470625	+
intron-intron	ENST00000360605	ENST00000360605		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000360605	ENST00000542441		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000360605	ENST00000392271		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000360605	ENST00000312051		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000360605	ENST00000574176		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000542441	ENST00000360605		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000542441	ENST00000542441		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000542441	ENST00000392271		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000542441	ENST00000312051		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000542441	ENST00000574176		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000392271	ENST00000360605		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000392271	ENST00000542441		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000392271	ENST00000392271		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000392271	ENST00000312051		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000392271	ENST00000574176		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000312051	ENST00000360605		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000312051	ENST00000542441		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000312051	ENST00000392271		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000312051	ENST00000312051		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000312051	ENST00000574176		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000574176	ENST00000360605		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000574176	ENST00000542441		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000574176	ENST00000392271		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000574176	ENST00000312051		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-intron	ENST00000574176	ENST00000574176		ChiTaRS3.1			AA809230	URI1	chr19	30504370	+	URI1	chr19	30504454	-
intron-3UTR	ENST00000340645	ENST00000343245		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000340645	ENST00000369070		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000340645	ENST00000369076		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000340645	ENST00000360666		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-5UTR	ENST00000340645	ENST00000475645		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000343245		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000369070		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000369076		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000393667	ENST00000360666		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-5UTR	ENST00000393667	ENST00000475645		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000343245		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000369070		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000369076		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-3UTR	ENST00000472829	ENST00000360666		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-5UTR	ENST00000472829	ENST00000475645		ChiTaRS3.1			AI653140	GOLGB1	chr3	121383119	+	ATG5	chr6	106634318	+
intron-intron	ENST00000472729	ENST00000472729		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000472729	ENST00000311832		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000472729	ENST00000538736		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000311832	ENST00000472729		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000311832	ENST00000311832		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000311832	ENST00000538736		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000538736	ENST00000472729		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000538736	ENST00000311832		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-intron	ENST00000538736	ENST00000538736		ChiTaRS3.1			AI557080	COMMD1	chr2	62352415	+	COMMD1	chr2	62352322	-
intron-3CDS	ENST00000481781	ENST00000606498		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-3CDS	ENST00000481781	ENST00000294613		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-3CDS	ENST00000481781	ENST00000371180		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-intron	ENST00000481781	ENST00000472989		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-intron	ENST00000481781	ENST00000371177		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-3CDS	ENST00000397270	ENST00000606498		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-3CDS	ENST00000397270	ENST00000294613		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-3CDS	ENST00000397270	ENST00000371180		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-intron	ENST00000397270	ENST00000472989		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
intron-intron	ENST00000397270	ENST00000371177		ChiTaRS3.1			BM509290	INS-IGF2	chr11	2182411	+	TM2D1	chr1	62190787	-
3UTR-3UTR	ENST00000553645	ENST00000553645		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000311089		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554339		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554871		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000540526		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000311089	ENST00000553645		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000311089		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554339		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554871		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000540526		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554339	ENST00000553645		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000311089		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554339		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554871		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000540526		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554871	ENST00000553645		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000311089		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554339		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554871		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000540526		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000540526	ENST00000553645		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000311089		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554339		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554871		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000540526		ChiTaRS3.1			BE549660	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000217246	ENST00000390548		ChiTaRS3.1			AL833490	MACROD2	chr20	14595690	+	IGHG1	chr14	106744801	+
intron-intron	ENST00000310348	ENST00000390548		ChiTaRS3.1			AL833490	MACROD2	chr20	14595690	+	IGHG1	chr14	106744801	+
intron-intron	ENST00000464883	ENST00000390548		ChiTaRS3.1			AL833490	MACROD2	chr20	14595690	+	IGHG1	chr14	106744801	+
intron-intron	ENST00000402914	ENST00000390548		ChiTaRS3.1			AL833490	MACROD2	chr20	14595690	+	IGHG1	chr14	106744801	+
intron-intron	ENST00000378058	ENST00000390548		ChiTaRS3.1			AL833490	MACROD2	chr20	14595690	+	IGHG1	chr14	106744801	+
intron-intron	ENST00000407045	ENST00000390548		ChiTaRS3.1			AL833490	MACROD2	chr20	14595690	+	IGHG1	chr14	106744801	+
intron-intron	ENST00000377067	ENST00000377067		ChiTaRS3.1			DW467550	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000377067	ENST00000483422		ChiTaRS3.1			DW467550	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000483422	ENST00000377067		ChiTaRS3.1			DW467550	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000483422	ENST00000483422		ChiTaRS3.1			DW467550	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000528838	ENST00000528838		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000528838	ENST00000400780		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000528838	ENST00000528842		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000400780	ENST00000528838		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000400780	ENST00000400780		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000400780	ENST00000528842		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000528842	ENST00000528838		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000528842	ENST00000400780		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-intron	ENST00000528842	ENST00000528842		ChiTaRS3.1			AF289600	HSF1	chr8	145532132	+	HSF1	chr8	145526411	+
intron-3UTR	ENST00000526148	ENST00000526148		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000526148	ENST00000525681		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000526148	ENST00000339995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000526148	ENST00000396525		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525681	ENST00000526148		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525681	ENST00000525681		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525681	ENST00000339995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525681	ENST00000396525		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000339995	ENST00000526148		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000339995	ENST00000525681		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000339995	ENST00000339995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000339995	ENST00000396525		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000396525	ENST00000526148		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000396525	ENST00000525681		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000396525	ENST00000339995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000396525	ENST00000396525		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525995	ENST00000526148		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525995	ENST00000525681		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525995	ENST00000339995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-3UTR	ENST00000525995	ENST00000396525		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			AW999110	EIF4G2	chr11	10818873	-	EIF4G2	chr11	10818982	+
intron-intron	ENST00000396373	ENST00000470610		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000396373	ENST00000389672		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000396373	ENST00000542517		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000396373	ENST00000514100		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000396373	ENST00000502694		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000396373	ENST00000442602		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000544715	ENST00000470610		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000544715	ENST00000389672		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000544715	ENST00000542517		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000544715	ENST00000514100		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000544715	ENST00000502694		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-intron	ENST00000544715	ENST00000442602		ChiTaRS3.1			AV734180	ETV6	chr12	12265329	+	EPHA6	chr3	96969730	-
intron-3CDS	ENST00000262367	ENST00000262367		ChiTaRS3.1			BE156640	CREBBP	chr16	3832825	+	CREBBP	chr16	3820923	+
intron-3CDS	ENST00000262367	ENST00000382070		ChiTaRS3.1			BE156640	CREBBP	chr16	3832825	+	CREBBP	chr16	3820923	+
intron-3CDS	ENST00000382070	ENST00000262367		ChiTaRS3.1			BE156640	CREBBP	chr16	3832825	+	CREBBP	chr16	3820923	+
intron-3CDS	ENST00000382070	ENST00000382070		ChiTaRS3.1			BE156640	CREBBP	chr16	3832825	+	CREBBP	chr16	3820923	+
intron-3CDS	ENST00000434724	ENST00000434724		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000434724	ENST00000439887		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000434724	ENST00000563468		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000434724	ENST00000420576		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-intron	ENST00000434724	ENST00000564790		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000439887	ENST00000434724		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000439887	ENST00000439887		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000439887	ENST00000563468		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000439887	ENST00000420576		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-intron	ENST00000439887	ENST00000564790		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000563468	ENST00000434724		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000563468	ENST00000439887		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000563468	ENST00000563468		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000563468	ENST00000420576		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-intron	ENST00000563468	ENST00000564790		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000420576	ENST00000434724		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000420576	ENST00000439887		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000420576	ENST00000563468		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000420576	ENST00000420576		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-intron	ENST00000420576	ENST00000564790		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000564790	ENST00000434724		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000564790	ENST00000439887		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000564790	ENST00000563468		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-3CDS	ENST00000564790	ENST00000420576		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
intron-intron	ENST00000564790	ENST00000564790		ChiTaRS3.1			BQ344470	GSPT1	chr16	11984956	+	GSPT1	chr16	11969727	+
3UTR-intron	ENST00000539107	ENST00000380250		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000539107	ENST00000463566		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000539107	ENST00000542859		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000539107	ENST00000380217		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000545336	ENST00000380250		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000545336	ENST00000463566		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000545336	ENST00000542859		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000545336	ENST00000380217		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381256	ENST00000380250		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381256	ENST00000463566		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381256	ENST00000542859		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381256	ENST00000380217		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381259	ENST00000380250		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381259	ENST00000463566		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381259	ENST00000542859		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000381259	ENST00000380217		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
intron-intron	ENST00000540401	ENST00000380250		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
intron-intron	ENST00000540401	ENST00000463566		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
intron-intron	ENST00000540401	ENST00000542859		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
intron-intron	ENST00000540401	ENST00000380217		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000306172	ENST00000380250		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000306172	ENST00000463566		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000306172	ENST00000542859		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
3UTR-intron	ENST00000306172	ENST00000380217		ChiTaRS3.1			AW897460	CCDC91	chr12	28702997	+	FRY	chr13	32794482	+
intron-intron	ENST00000360319	ENST00000366691		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000360319	ENST00000493528		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000422373	ENST00000366691		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000422373	ENST00000493528		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369850	ENST00000366691		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369850	ENST00000493528		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369856	ENST00000366691		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369856	ENST00000493528		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000344736	ENST00000366691		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000344736	ENST00000493528		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000498491	ENST00000366691		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000498491	ENST00000493528		ChiTaRS3.1			BF848510	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000411948	ENST00000411948		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000411948	ENST00000366528		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000411948	ENST00000498262		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000366528	ENST00000411948		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000366528	ENST00000366528		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000366528	ENST00000498262		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000498262	ENST00000411948		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000498262	ENST00000366528		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-intron	ENST00000498262	ENST00000498262		ChiTaRS3.1			AV723400	COX20	chr1	245000586	+	COX20	chr1	245001281	-
intron-3UTR	ENST00000413405	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000413405	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000413405	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000413405	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000414457	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000414457	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000414457	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000446807	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000446807	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000446807	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000423223	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000423223	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000423223	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000445521	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000445521	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000445521	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000455774	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000455774	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000455774	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000430295	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000430295	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000430295	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000608994	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000608994	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000608994	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000609413	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000609413	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000609413	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-intron	ENST00000537908	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000537908	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-intron	ENST00000537908	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-intron	ENST00000427063	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-3UTR	ENST00000427063	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
3UTR-intron	ENST00000427063	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000413405		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000414457		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000446807		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000423223		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000445521		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000438202	ENST00000455774		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000430295		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000608994		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000609413		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000537908		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3UTR	ENST00000438202	ENST00000427063		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-intron	ENST00000438202	ENST00000438202		ChiTaRS3.1			DA570840	PTCHD3P1	chr10	29710611	+	PTCHD3P1	chr10	29698518	+
intron-3CDS	ENST00000350082	ENST00000350082		ChiTaRS3.1			AA862830	ICK	chr6	52906133	+	ICK	chr6	52878745	+
intron-3CDS	ENST00000350082	ENST00000356971		ChiTaRS3.1			AA862830	ICK	chr6	52906133	+	ICK	chr6	52878745	+
intron-3CDS	ENST00000356971	ENST00000350082		ChiTaRS3.1			AA862830	ICK	chr6	52906133	+	ICK	chr6	52878745	+
intron-3CDS	ENST00000356971	ENST00000356971		ChiTaRS3.1			AA862830	ICK	chr6	52906133	+	ICK	chr6	52878745	+
5CDS-3UTR	ENST00000238788	ENST00000331457		ChiTaRS3.1			BF813460	TMEM214	chr2	27262627	-	DRG1	chr22	31830006	+
5CDS-intron	ENST00000238788	ENST00000433341		ChiTaRS3.1			BF813460	TMEM214	chr2	27262627	-	DRG1	chr22	31830006	+
5CDS-3UTR	ENST00000404032	ENST00000331457		ChiTaRS3.1			BF813460	TMEM214	chr2	27262627	-	DRG1	chr22	31830006	+
5CDS-intron	ENST00000404032	ENST00000433341		ChiTaRS3.1			BF813460	TMEM214	chr2	27262627	-	DRG1	chr22	31830006	+
intron-3CDS	ENST00000298310	ENST00000298310		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000298310	ENST00000382135		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000298310	ENST00000545773		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000298310	ENST00000556925		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000298310	ENST00000546046		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000298310	ENST00000556672		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000382135	ENST00000298310		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000382135	ENST00000382135		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000382135	ENST00000545773		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000382135	ENST00000556925		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000382135	ENST00000546046		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000382135	ENST00000556672		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000545773	ENST00000298310		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000545773	ENST00000382135		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000545773	ENST00000545773		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000545773	ENST00000556925		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000545773	ENST00000546046		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000545773	ENST00000556672		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000556925	ENST00000298310		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556925	ENST00000382135		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556925	ENST00000545773		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556925	ENST00000556925		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556925	ENST00000546046		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556925	ENST00000556672		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000546046	ENST00000298310		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000546046	ENST00000382135		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000546046	ENST00000545773		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000546046	ENST00000556925		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000546046	ENST00000546046		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000546046	ENST00000556672		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-3CDS	ENST00000556672	ENST00000298310		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556672	ENST00000382135		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556672	ENST00000545773		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556672	ENST00000556925		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-5UTR	ENST00000556672	ENST00000546046		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000556672	ENST00000556672		ChiTaRS3.1			BQ363640	NEMF	chr14	50269182	-	NEMF	chr14	50295399	-
intron-intron	ENST00000260702	ENST00000341217		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000581407		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000582266		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000452648		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000582059		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000583953		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000577682		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000583522		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000260702	ENST00000581381		ChiTaRS3.1			BF376500	LOXL4	chr10	100025588	+	FAM222B	chr17	27148674	-
intron-intron	ENST00000398970	ENST00000400794		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000398970	ENST00000361054		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000398970	ENST00000369962		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000398970	ENST00000369965		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000398970	ENST00000357672		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000300574	ENST00000400794		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000300574	ENST00000361054		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000300574	ENST00000369962		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000300574	ENST00000369965		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000300574	ENST00000357672		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000574295	ENST00000400794		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000574295	ENST00000361054		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000574295	ENST00000369962		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000574295	ENST00000369965		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000574295	ENST00000357672		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000572145	ENST00000400794		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000572145	ENST00000361054		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000572145	ENST00000369962		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000572145	ENST00000369965		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
intron-intron	ENST00000572145	ENST00000357672		ChiTaRS3.1			BE062150	CRK	chr17	1349884	+	WDR47	chr1	109549160	+
In-frame	ENST00000306385	ENST00000306385		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306385	ENST00000354870		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306385	ENST00000397816		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306385	ENST00000306349		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306385	ENST00000397814		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
5CDS-3UTR	ENST00000306385	ENST00000523849		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
3UTR-3CDS	ENST00000354870	ENST00000306385		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
3UTR-3CDS	ENST00000354870	ENST00000354870		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
3UTR-3CDS	ENST00000354870	ENST00000397816		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
3UTR-3CDS	ENST00000354870	ENST00000306349		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
3UTR-3CDS	ENST00000354870	ENST00000397814		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
3UTR-3UTR	ENST00000354870	ENST00000523849		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397816	ENST00000306385		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397816	ENST00000354870		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397816	ENST00000397816		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397816	ENST00000306349		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397816	ENST00000397814		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
5CDS-3UTR	ENST00000397816	ENST00000523849		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306349	ENST00000306385		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306349	ENST00000354870		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306349	ENST00000397816		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306349	ENST00000306349		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000306349	ENST00000397814		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
5CDS-3UTR	ENST00000306349	ENST00000523849		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397814	ENST00000306385		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397814	ENST00000354870		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397814	ENST00000397816		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397814	ENST00000306349		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
In-frame	ENST00000397814	ENST00000397814		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
5CDS-3UTR	ENST00000397814	ENST00000523849		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3CDS	ENST00000523849	ENST00000306385		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3CDS	ENST00000523849	ENST00000354870		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3CDS	ENST00000523849	ENST00000397816		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3CDS	ENST00000523849	ENST00000306349		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3CDS	ENST00000523849	ENST00000397814		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3UTR	ENST00000523849	ENST00000523849		ChiTaRS3.1			AA452720	BMP1	chr8	22052390	+	BMP1	chr8	22034121	+
intron-3CDS	ENST00000397086	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000397086	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000397086	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000397086	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000397086	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000397086	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000397086	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000397086	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000320225	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000320225	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000320225	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000320225	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000320225	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000320225	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000320225	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000320225	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566458	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566458	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566458	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566458	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566458	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566458	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566458	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566458	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566397	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566397	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566397	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000566397	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566397	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566397	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566397	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000566397	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000565678	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000565678	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000565678	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000565678	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000565678	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000565678	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000565678	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000565678	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000561718	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000561718	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000561718	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000561718	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000561718	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000561718	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000561718	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000561718	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000568631	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000568631	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000568631	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000568631	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000568631	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000568631	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000568631	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000568631	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000569598	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000569598	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000569598	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000569598	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000569598	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000569598	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000569598	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000569598	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000301730	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000301730	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000301730	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000301730	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000301730	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000301730	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000301730	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000301730	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000567147	ENST00000558170		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000567147	ENST00000409487		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000567147	ENST00000303660		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-3CDS	ENST00000567147	ENST00000539609		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000567147	ENST00000493689		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000567147	ENST00000470879		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000567147	ENST00000465070		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000567147	ENST00000462355		ChiTaRS3.1			DA783540	RNPS1	chr16	2313246	-	ZEB2	chr2	145155926	-
intron-intron	ENST00000400521	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400521	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400521	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400521	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000341329		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000392062		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000409053		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000493526		ChiTaRS3.1			BX089300	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
3UTR-3UTR	ENST00000504986	ENST00000504986		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-intron	ENST00000504986	ENST00000513702		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-3UTR	ENST00000504986	ENST00000325094		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-3UTR	ENST00000513702	ENST00000504986		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-intron	ENST00000513702	ENST00000513702		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-3UTR	ENST00000513702	ENST00000325094		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-3UTR	ENST00000325094	ENST00000504986		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-intron	ENST00000325094	ENST00000513702		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-3UTR	ENST00000325094	ENST00000325094		ChiTaRS3.1			AW972840	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-intron	ENST00000245907	ENST00000268099		ChiTaRS3.1			AA699990	C3	chr19	6677901	+	SCAMP2	chr15	75146171	+
intron-intron	ENST00000599668	ENST00000268099		ChiTaRS3.1			AA699990	C3	chr19	6677901	+	SCAMP2	chr15	75146171	+
intron-intron	ENST00000456329	ENST00000467125		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000456329	ENST00000368498		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000456329	ENST00000535237		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000456329	ENST00000052569		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-intron	ENST00000523662	ENST00000467125		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000523662	ENST00000368498		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000523662	ENST00000535237		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000523662	ENST00000052569		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-intron	ENST00000307063	ENST00000467125		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000307063	ENST00000368498		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000307063	ENST00000535237		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000307063	ENST00000052569		ChiTaRS3.1			BI014080	PWWP2A	chr5	159526393	-	GOPC	chr6	117884193	+
intron-3UTR	ENST00000601488	ENST00000336798		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000601488	ENST00000339394		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-intron	ENST00000601488	ENST00000471567		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000305232	ENST00000336798		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000305232	ENST00000339394		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-intron	ENST00000305232	ENST00000471567		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000337491	ENST00000336798		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000337491	ENST00000339394		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-intron	ENST00000337491	ENST00000471567		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000381935	ENST00000336798		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000381935	ENST00000339394		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-intron	ENST00000381935	ENST00000471567		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000594279	ENST00000336798		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-3UTR	ENST00000594279	ENST00000339394		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
intron-intron	ENST00000594279	ENST00000471567		ChiTaRS3.1			AI148370	SIRT6	chr19	4174171	+	SDC3	chr1	31346053	+
5CDS-intron	ENST00000261267	ENST00000429084		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000261267	ENST00000359593		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000261267	ENST00000478501		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000261267	ENST00000421755		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000261267	ENST00000422582		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000549690	ENST00000429084		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000549690	ENST00000359593		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000549690	ENST00000478501		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000549690	ENST00000421755		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000549690	ENST00000422582		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000548839	ENST00000429084		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000548839	ENST00000359593		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000548839	ENST00000478501		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000548839	ENST00000421755		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
5CDS-intron	ENST00000548839	ENST00000422582		ChiTaRS3.1			CB986850	LYZ	chr12	69742306	+	AP4M1	chr7	99707361	+
Frame-shit	ENST00000534312	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
5CDS-intron	ENST00000534312	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000395850	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000395850	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000533403	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000533403	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000351554	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000351554	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000415002	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000415002	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000445143	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000445143	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000426650	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000426650	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000437761	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000437761	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000527577	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000527577	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-3CDS	ENST00000528700	ENST00000375147		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000528700	ENST00000491445		ChiTaRS3.1			DB373980	CD59	chr11	33731750	+	NCBP1	chr9	100431927	-
intron-intron	ENST00000359660	ENST00000530124		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000359660	ENST00000257247		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000359660	ENST00000525875		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-3UTR	ENST00000359660	ENST00000378024		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000542267	ENST00000530124		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000542267	ENST00000257247		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000542267	ENST00000525875		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-3UTR	ENST00000542267	ENST00000378024		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000496714	ENST00000530124		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000496714	ENST00000257247		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-intron	ENST00000496714	ENST00000525875		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
intron-3UTR	ENST00000496714	ENST00000378024		ChiTaRS3.1			AW970390	FBXL17	chr5	107504855	-	AHNAK	chr11	62283641	-
5CDS-intron	ENST00000369306	ENST00000465508		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000349363		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000377577		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000294401		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000542246		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000377573		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000465508		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000349363		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000377577		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000294401		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000542246		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000377573		ChiTaRS3.1			BG685810	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-3CDS	ENST00000462138	ENST00000462138		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000462138	ENST00000423525		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000462138	ENST00000461139		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000462138	ENST00000423516		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000462138	ENST00000296289		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000423525	ENST00000462138		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000423525	ENST00000423525		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000423525	ENST00000461139		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000423525	ENST00000423516		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000423525	ENST00000296289		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000461139	ENST00000462138		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000461139	ENST00000423525		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000461139	ENST00000461139		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000461139	ENST00000423516		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000461139	ENST00000296289		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000423516	ENST00000462138		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000423516	ENST00000423525		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000423516	ENST00000461139		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000423516	ENST00000423516		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000423516	ENST00000296289		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000296289	ENST00000462138		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000296289	ENST00000423525		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000296289	ENST00000461139		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000296289	ENST00000423516		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-5UTR	ENST00000296289	ENST00000296289		ChiTaRS3.1			BF529930	TKT	chr3	53262154	+	TKT	chr3	53262106	-
intron-3CDS	ENST00000358602	ENST00000358602		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000358602	ENST00000509867		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000358602	ENST00000330838		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000509867	ENST00000358602		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000509867	ENST00000509867		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000509867	ENST00000330838		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000330838	ENST00000358602		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000330838	ENST00000509867		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000330838	ENST00000330838		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000514252	ENST00000358602		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000514252	ENST00000509867		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-3CDS	ENST00000514252	ENST00000330838		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			AF075680	ANKRD17	chr4	73973191	+	ANKRD17	chr4	73959839	-
3UTR-3UTR	ENST00000375095	ENST00000375095		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-intron	ENST00000375095	ENST00000314475		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000375095	ENST00000531346		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000375095	ENST00000529187		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
intron-3UTR	ENST00000314475	ENST00000375095		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
intron-intron	ENST00000314475	ENST00000314475		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
intron-3UTR	ENST00000314475	ENST00000531346		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
intron-3UTR	ENST00000314475	ENST00000529187		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000531346	ENST00000375095		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-intron	ENST00000531346	ENST00000314475		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000531346	ENST00000531346		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000531346	ENST00000529187		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000529187	ENST00000375095		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-intron	ENST00000529187	ENST00000314475		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000529187	ENST00000531346		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
3UTR-3UTR	ENST00000529187	ENST00000529187		ChiTaRS3.1			CA778080	TMEM136	chr11	120203659	-	TMEM136	chr11	120203573	+
intron-3CDS	ENST00000260643	ENST00000260643		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000260643	ENST00000406567		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000260643	ENST00000416802		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000406567	ENST00000260643		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000406567	ENST00000406567		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000406567	ENST00000416802		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000416802	ENST00000260643		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000416802	ENST00000406567		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000416802	ENST00000416802		ChiTaRS3.1			AA467840	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000334956	ENST00000466084		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000334956	ENST00000296127		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000334956	ENST00000424952		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000334956	ENST00000342790		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000539723	ENST00000466084		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000539723	ENST00000296127		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000539723	ENST00000424952		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000539723	ENST00000342790		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000550549	ENST00000466084		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000550549	ENST00000296127		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000550549	ENST00000424952		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000550549	ENST00000342790		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000538608	ENST00000466084		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000538608	ENST00000296127		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000538608	ENST00000424952		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000538608	ENST00000342790		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000526746	ENST00000466084		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000526746	ENST00000296127		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-3UTR	ENST00000526746	ENST00000424952		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
intron-intron	ENST00000526746	ENST00000342790		ChiTaRS3.1			H27240	PARVA	chr11	12556592	+	ZDHHC3	chr3	44967344	-
3UTR-3CDS	ENST00000354185	ENST00000354185		ChiTaRS3.1			CB160980	DDX21	chr10	70743986	-	DDX21	chr10	70742504	+
intron-5UTR	ENST00000355221	ENST00000301905		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000355221	ENST00000522944		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000520188	ENST00000301905		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000520188	ENST00000522944		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000359530	ENST00000301905		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000359530	ENST00000522944		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000523899	ENST00000301905		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000523899	ENST00000522944		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000396774	ENST00000301905		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-5UTR	ENST00000396774	ENST00000522944		ChiTaRS3.1			BI089750	ATP6V1H	chr8	54727284	+	PBK	chr8	27695344	-
intron-intron	ENST00000356663	ENST00000306749		ChiTaRS3.1			BG982750	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000356663	ENST00000579758		ChiTaRS3.1			BG982750	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000333175	ENST00000306749		ChiTaRS3.1			BG982750	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000333175	ENST00000579758		ChiTaRS3.1			BG982750	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-3CDS	ENST00000544246	ENST00000544246		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000544246	ENST00000377865		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000544246	ENST00000456367		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000544246	ENST00000328454		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000544246	ENST00000377861		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377865	ENST00000544246		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377865	ENST00000377865		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377865	ENST00000456367		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377865	ENST00000328454		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377865	ENST00000377861		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000456367	ENST00000544246		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000456367	ENST00000377865		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000456367	ENST00000456367		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000456367	ENST00000328454		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000456367	ENST00000377861		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000328454	ENST00000544246		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000328454	ENST00000377865		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000328454	ENST00000456367		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000328454	ENST00000328454		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000328454	ENST00000377861		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377861	ENST00000544246		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377861	ENST00000377865		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377861	ENST00000456367		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377861	ENST00000328454		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-3CDS	ENST00000377861	ENST00000377861		ChiTaRS3.1			BM562980	PCDH9	chr13	67801437	+	PCDH9	chr13	67801342	-
intron-intron	ENST00000399262	ENST00000370345		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399262	ENST00000494350		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399262	ENST00000451524		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399262	ENST00000535773		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399262	ENST00000370329		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000402544	ENST00000370345		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000402544	ENST00000494350		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000402544	ENST00000451524		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000402544	ENST00000535773		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000402544	ENST00000370329		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399251	ENST00000370345		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399251	ENST00000494350		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399251	ENST00000451524		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399251	ENST00000535773		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000399251	ENST00000370329		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000542921	ENST00000370345		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000542921	ENST00000494350		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000542921	ENST00000451524		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000542921	ENST00000535773		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000542921	ENST00000370329		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000489372	ENST00000370345		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000489372	ENST00000494350		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000489372	ENST00000451524		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000489372	ENST00000535773		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000489372	ENST00000370329		ChiTaRS3.1			AW996900	JMJD1C	chr10	65023420	+	SEC31B	chr10	102285012	-
intron-intron	ENST00000343023	ENST00000005260		ChiTaRS3.1			BC011660	MCM7	chr7	99695474	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000343023	ENST00000462558		ChiTaRS3.1			BC011660	MCM7	chr7	99695474	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000354230	ENST00000005260		ChiTaRS3.1			BC011660	MCM7	chr7	99695474	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000354230	ENST00000462558		ChiTaRS3.1			BC011660	MCM7	chr7	99695474	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000303887	ENST00000005260		ChiTaRS3.1			BC011660	MCM7	chr7	99695474	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000303887	ENST00000462558		ChiTaRS3.1			BC011660	MCM7	chr7	99695474	+	BAIAP2L1	chr7	98015908	-
intron-3CDS	ENST00000304874	ENST00000389054		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000520569		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000253811		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000398566		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000398562		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000398557		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000389057		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000304874	ENST00000518047		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-intron	ENST00000304874	ENST00000494967		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000389054		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000520569		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000253811		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000398566		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000398562		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000398557		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000389057		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000380839	ENST00000518047		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-intron	ENST00000380839	ENST00000494967		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000389054		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000520569		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000253811		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000398566		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000398562		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000398557		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000389057		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395332	ENST00000518047		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-intron	ENST00000395332	ENST00000494967		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000389054		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000520569		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000253811		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000398566		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000398562		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000398557		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000389057		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000395331	ENST00000518047		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-intron	ENST00000395331	ENST00000494967		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000389054		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000520569		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000253811		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000398566		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000398562		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000398557		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000389057		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-3CDS	ENST00000464970	ENST00000518047		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
intron-intron	ENST00000464970	ENST00000494967		ChiTaRS3.1			BF853820	ASL	chr7	65549245	+	DIAPH1	chr5	140954574	+
Frame-shit	ENST00000260970	ENST00000553521		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000260970	ENST00000394366		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000260970	ENST00000553548		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000260970	ENST00000557154		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000260970	ENST00000451983		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000260970	ENST00000553635		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000260970	ENST00000556587		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000260970	ENST00000555349		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000260970	ENST00000554021		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000409714	ENST00000553521		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000409714	ENST00000394366		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000409714	ENST00000553548		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000409714	ENST00000557154		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000409714	ENST00000451983		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000409714	ENST00000553635		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000409714	ENST00000556587		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000409714	ENST00000555349		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000409714	ENST00000554021		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000462903	ENST00000553521		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000462903	ENST00000394366		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000462903	ENST00000553548		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000462903	ENST00000557154		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000462903	ENST00000451983		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000462903	ENST00000553635		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000462903	ENST00000556587		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000462903	ENST00000555349		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000462903	ENST00000554021		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000448752	ENST00000553521		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000448752	ENST00000394366		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000448752	ENST00000553548		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000448752	ENST00000557154		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000448752	ENST00000451983		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
Frame-shit	ENST00000448752	ENST00000553635		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000448752	ENST00000556587		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000448752	ENST00000555349		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
5CDS-3UTR	ENST00000448752	ENST00000554021		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3CDS	ENST00000482772	ENST00000553521		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3CDS	ENST00000482772	ENST00000394366		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3CDS	ENST00000482772	ENST00000553548		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3CDS	ENST00000482772	ENST00000557154		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3CDS	ENST00000482772	ENST00000451983		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3CDS	ENST00000482772	ENST00000553635		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3UTR	ENST00000482772	ENST00000556587		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3UTR	ENST00000482772	ENST00000555349		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3UTR	ENST00000482772	ENST00000554021		ChiTaRS3.1			BF095300	PPIG	chr2	170471217	+	SRSF5	chr14	70235360	+
intron-3UTR	ENST00000372070	ENST00000265350		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000372070	ENST00000467535		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000372070	ENST00000409312		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000372070	ENST00000409060		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000351829	ENST00000265350		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000351829	ENST00000467535		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000351829	ENST00000409312		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000351829	ENST00000409060		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-3UTR	ENST00000471651	ENST00000265350		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-5UTR	ENST00000471651	ENST00000467535		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-3UTR	ENST00000471651	ENST00000409312		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-intron	ENST00000471651	ENST00000409060		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000473038	ENST00000265350		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000473038	ENST00000467535		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000473038	ENST00000409312		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000473038	ENST00000409060		ChiTaRS3.1			AI110770	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000462705	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000462705	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000462705	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000462705	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000462705	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000462705	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000462705	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000393785	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000393785	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000393785	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000393785	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000393785	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000393785	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000393785	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000481632	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000481632	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000481632	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000481632	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000481632	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000481632	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000481632	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000471418	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000471418	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000471418	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000471418	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000471418	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000471418	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000471418	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000357258	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000357258	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000357258	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000357258	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000357258	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000357258	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000357258	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000464560	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000464560	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000464560	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000464560	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000464560	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000464560	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000464560	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000488663	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000488663	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000488663	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000488663	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000488663	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000488663	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000488663	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000474710	ENST00000402508		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000474710	ENST00000403359		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000474710	ENST00000316377		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000474710	ENST00000480038		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-5UTR	ENST00000474710	ENST00000378314		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000474710	ENST00000405808		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000474710	ENST00000434523		ChiTaRS3.1			DA219920	ZBTB20	chr3	114819022	-	FBXO11	chr2	48066910	-
intron-intron	ENST00000480514	ENST00000479481		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000480514	ENST00000370992		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000480514	ENST00000536831		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000480514	ENST00000315563		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000480514	ENST00000414986		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000485614	ENST00000479481		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000485614	ENST00000370992		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000485614	ENST00000536831		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000485614	ENST00000315563		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000485614	ENST00000414986		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000486180	ENST00000479481		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000486180	ENST00000370992		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000486180	ENST00000536831		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000486180	ENST00000315563		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000486180	ENST00000414986		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000490493	ENST00000479481		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000490493	ENST00000370992		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000490493	ENST00000536831		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000490493	ENST00000315563		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000490493	ENST00000414986		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000460135	ENST00000479481		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000460135	ENST00000370992		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000460135	ENST00000536831		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000460135	ENST00000315563		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000460135	ENST00000414986		ChiTaRS3.1			BC007100	EFCAB10	chr7	105208836	+	RRP12	chr10	99154012	-
intron-intron	ENST00000323963	ENST00000323963		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000323963	ENST00000440191		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000323963	ENST00000356531		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000440191	ENST00000323963		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000440191	ENST00000440191		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000440191	ENST00000356531		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000356531	ENST00000323963		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000356531	ENST00000440191		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
intron-intron	ENST00000356531	ENST00000356531		ChiTaRS3.1			AW840050	EIF4A2	chr3	186505963	+	EIF4A2	chr3	186505704	-
3UTR-3UTR	ENST00000343017	ENST00000343017		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-intron	ENST00000343017	ENST00000326277		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000343017	ENST00000381410		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000326277	ENST00000343017		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-intron	ENST00000326277	ENST00000326277		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3UTR	ENST00000326277	ENST00000381410		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000381410	ENST00000343017		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-intron	ENST00000381410	ENST00000326277		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
3UTR-3UTR	ENST00000381410	ENST00000381410		ChiTaRS3.1			AA721760	SNX18	chr5	53841192	+	SNX18	chr5	53841215	-
intron-3CDS	ENST00000506140	ENST00000473997		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000506140	ENST00000346416		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000506140	ENST00000339269		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000506140	ENST00000357886		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3UTR	ENST00000506140	ENST00000544843		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000506140	ENST00000477105		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000515571	ENST00000473997		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000515571	ENST00000346416		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000515571	ENST00000339269		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000515571	ENST00000357886		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3UTR	ENST00000515571	ENST00000544843		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000515571	ENST00000477105		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000382599	ENST00000473997		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000382599	ENST00000346416		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000382599	ENST00000339269		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000382599	ENST00000357886		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3UTR	ENST00000382599	ENST00000544843		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000382599	ENST00000477105		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000507294	ENST00000473997		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000507294	ENST00000346416		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000507294	ENST00000339269		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000507294	ENST00000357886		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3UTR	ENST00000507294	ENST00000544843		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000507294	ENST00000477105		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000314348	ENST00000473997		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000314348	ENST00000346416		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000314348	ENST00000339269		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000314348	ENST00000357886		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3UTR	ENST00000314348	ENST00000544843		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000314348	ENST00000477105		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000335585	ENST00000473997		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000335585	ENST00000346416		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000335585	ENST00000339269		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3CDS	ENST00000335585	ENST00000357886		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-3UTR	ENST00000335585	ENST00000544843		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000335585	ENST00000477105		ChiTaRS3.1			AA319710	PPP2R2C	chr4	6325065	-	CDK5RAP1	chr20	31954692	-
intron-intron	ENST00000577297	ENST00000577297		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000577297	ENST00000498979		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000577297	ENST00000500970		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000577297	ENST00000578923		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000577297	ENST00000530002		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000498979	ENST00000577297		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000498979	ENST00000498979		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000498979	ENST00000500970		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000498979	ENST00000578923		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000498979	ENST00000530002		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000500970	ENST00000577297		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000500970	ENST00000498979		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000500970	ENST00000500970		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000500970	ENST00000578923		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000500970	ENST00000530002		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000578923	ENST00000577297		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000578923	ENST00000498979		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000578923	ENST00000500970		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000578923	ENST00000578923		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000578923	ENST00000530002		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000530002	ENST00000577297		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000530002	ENST00000498979		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000530002	ENST00000500970		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000530002	ENST00000578923		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000530002	ENST00000530002		ChiTaRS3.1			BF921050	USP2-AS1	chr11	119290000	+	USP2-AS1	chr11	119289427	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF397907	AFF1	chr4	87976145	+	KMT2A	chr11	118354704	+
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			AW883460	BOLA2	chr16	29857577	+	BOLA2	chr16	29855853	+
intron-intron	ENST00000343253	ENST00000315436		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000343253	ENST00000542304		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000343253	ENST00000441406		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000343253	ENST00000544233		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000343253	ENST00000535496		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000343253	ENST00000536738		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000401026	ENST00000315436		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000401026	ENST00000542304		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000401026	ENST00000441406		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000401026	ENST00000544233		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000401026	ENST00000535496		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000401026	ENST00000536738		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000338949	ENST00000315436		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000338949	ENST00000542304		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000338949	ENST00000441406		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000338949	ENST00000544233		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000338949	ENST00000535496		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000338949	ENST00000536738		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000334652	ENST00000315436		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000334652	ENST00000542304		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000334652	ENST00000441406		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000334652	ENST00000544233		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000334652	ENST00000535496		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000334652	ENST00000536738		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000557479	ENST00000315436		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000557479	ENST00000542304		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000557479	ENST00000441406		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000557479	ENST00000544233		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000557479	ENST00000535496		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000557479	ENST00000536738		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000421014	ENST00000315436		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000421014	ENST00000542304		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000421014	ENST00000441406		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000421014	ENST00000544233		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000421014	ENST00000535496		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000421014	ENST00000536738		ChiTaRS3.1			DB097970	CCDC18	chr1	93655316	-	WSB2	chr12	118479771	+
intron-intron	ENST00000265965	ENST00000265965		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000265965	ENST00000528200		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000265965	ENST00000532265		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000265965	ENST00000532212		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000528200	ENST00000265965		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000528200	ENST00000528200		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000528200	ENST00000532265		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000528200	ENST00000532212		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532265	ENST00000265965		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532265	ENST00000528200		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532265	ENST00000532265		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532265	ENST00000532212		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532212	ENST00000265965		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532212	ENST00000528200		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532212	ENST00000532265		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-intron	ENST00000532212	ENST00000532212		ChiTaRS3.1			BF885260	SERGEF	chr11	17833657	+	SERGEF	chr11	17832568	+
intron-3CDS	ENST00000334746	ENST00000281828		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000334746	ENST00000536361		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000554565	ENST00000281828		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000554565	ENST00000536361		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000393170	ENST00000281828		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000393170	ENST00000536361		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000298896	ENST00000281828		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000298896	ENST00000536361		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000555525	ENST00000281828		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
intron-3CDS	ENST00000555525	ENST00000536361		ChiTaRS3.1			AA651740	BTBD7	chr14	93749228	-	FARSB	chr2	223436735	-
5CDS-3UTR	ENST00000376030	ENST00000358055		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000376030	ENST00000373760		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000376030	ENST00000273063		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000376030	ENST00000373762		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000376030	ENST00000317151		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-intron	ENST00000376030	ENST00000497589		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000503743	ENST00000358055		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000503743	ENST00000373760		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000503743	ENST00000273063		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000503743	ENST00000373762		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000503743	ENST00000317151		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-intron	ENST00000503743	ENST00000497589		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000422387	ENST00000358055		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000422387	ENST00000373760		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000422387	ENST00000273063		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000422387	ENST00000373762		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000422387	ENST00000317151		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-intron	ENST00000422387	ENST00000497589		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000361144	ENST00000358055		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000361144	ENST00000373760		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000361144	ENST00000273063		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000361144	ENST00000373762		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000361144	ENST00000317151		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-intron	ENST00000361144	ENST00000497589		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400798	ENST00000358055		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400798	ENST00000373760		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400798	ENST00000273063		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400798	ENST00000373762		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400798	ENST00000317151		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-intron	ENST00000400798	ENST00000497589		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400797	ENST00000358055		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400797	ENST00000373760		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400797	ENST00000273063		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400797	ENST00000373762		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-3UTR	ENST00000400797	ENST00000317151		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
5CDS-intron	ENST00000400797	ENST00000497589		ChiTaRS3.1			CB123220	KAZN	chr1	15382666	-	SLC4A3	chr2	220506565	+
intron-intron	ENST00000440909	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000440909	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000448921	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000448921	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000437397	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000437397	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000355814	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000355814	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393087	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393087	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393088	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393088	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000404814	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000404814	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000449399	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000449399	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000402629	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000402629	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000555289	ENST00000329957		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000555289	ENST00000526462		ChiTaRS3.1			BX500960	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-5UTR	ENST00000578892	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000578379	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000449662	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000579788	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000418105	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000412356	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000581417	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000579687	ENST00000234590		ChiTaRS3.1			BE268890	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-intron	ENST00000425792	ENST00000425792		ChiTaRS3.1			BX098560	UBE2E2	chr3	23270532	+	UBE2E2	chr3	23267625	+
intron-intron	ENST00000425792	ENST00000396703		ChiTaRS3.1			BX098560	UBE2E2	chr3	23270532	+	UBE2E2	chr3	23267625	+
intron-intron	ENST00000396703	ENST00000425792		ChiTaRS3.1			BX098560	UBE2E2	chr3	23270532	+	UBE2E2	chr3	23267625	+
intron-intron	ENST00000396703	ENST00000396703		ChiTaRS3.1			BX098560	UBE2E2	chr3	23270532	+	UBE2E2	chr3	23267625	+
intron-3UTR	ENST00000296509	ENST00000409185		ChiTaRS3.1			U65410	MAD2L1	chr4	120980669	-	FAM168B	chr2	131809762	+
intron-intron	ENST00000296509	ENST00000389915		ChiTaRS3.1			U65410	MAD2L1	chr4	120980669	-	FAM168B	chr2	131809762	+
5CDS-intron	ENST00000392844	ENST00000299543		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000392844	ENST00000075430		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000392844	ENST00000587623		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000257789	ENST00000299543		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000257789	ENST00000075430		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000257789	ENST00000587623		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000546266	ENST00000299543		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000546266	ENST00000075430		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000546266	ENST00000587623		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
3UTR-intron	ENST00000417380	ENST00000299543		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
3UTR-intron	ENST00000417380	ENST00000075430		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
3UTR-intron	ENST00000417380	ENST00000587623		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000478028	ENST00000299543		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000478028	ENST00000075430		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000478028	ENST00000587623		ChiTaRS3.1			BI035910	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000407073	ENST00000258484		ChiTaRS3.1			BE700850	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000407073	ENST00000409654		ChiTaRS3.1			BE700850	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000478804	ENST00000258484		ChiTaRS3.1			BE700850	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000478804	ENST00000409654		ChiTaRS3.1			BE700850	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000404807	ENST00000258484		ChiTaRS3.1			BE700850	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000404807	ENST00000409654		ChiTaRS3.1			BE700850	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
5CDS-3UTR	ENST00000505658	ENST00000292641		ChiTaRS3.1			BM968150	LUC7L3	chr17	48822096	-	SCGB3A1	chr5	180017156	-
5CDS-3UTR	ENST00000393227	ENST00000292641		ChiTaRS3.1			BM968150	LUC7L3	chr17	48822096	-	SCGB3A1	chr5	180017156	-
intron-3UTR	ENST00000311571	ENST00000292641		ChiTaRS3.1			BM968150	LUC7L3	chr17	48822096	-	SCGB3A1	chr5	180017156	-
5CDS-3UTR	ENST00000240304	ENST00000292641		ChiTaRS3.1			BM968150	LUC7L3	chr17	48822096	-	SCGB3A1	chr5	180017156	-
5CDS-3UTR	ENST00000544170	ENST00000292641		ChiTaRS3.1			BM968150	LUC7L3	chr17	48822096	-	SCGB3A1	chr5	180017156	-
intron-3UTR	ENST00000503798	ENST00000292641		ChiTaRS3.1			BM968150	LUC7L3	chr17	48822096	-	SCGB3A1	chr5	180017156	-
intron-3CDS	ENST00000358580	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000354402	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000356738	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000357560	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000508496	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000412920	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000511201	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000507279	ENST00000334940		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000374417		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000340258		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000472561		ChiTaRS3.1			AI968150	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-intron	ENST00000392653	ENST00000505044		ChiTaRS3.1			BE714440	SPRR2A	chr1	153066051	+	PCYOX1	chr2	70508280	-
intron-3UTR	ENST00000392653	ENST00000433351		ChiTaRS3.1			BE714440	SPRR2A	chr1	153066051	+	PCYOX1	chr2	70508280	-
intron-intron	ENST00000392653	ENST00000264441		ChiTaRS3.1			BE714440	SPRR2A	chr1	153066051	+	PCYOX1	chr2	70508280	-
intron-intron	ENST00000392653	ENST00000545138		ChiTaRS3.1			BE714440	SPRR2A	chr1	153066051	+	PCYOX1	chr2	70508280	-
3UTR-intron	ENST00000374580	ENST00000377671		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000396026		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000402618		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000401790		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000538547		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000535822		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000316358		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374580	ENST00000462170		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000377671		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000396026		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000402618		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000401790		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000538547		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000535822		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000316358		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
3UTR-intron	ENST00000374574	ENST00000462170		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000377671		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000396026		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000402618		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000401790		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000538547		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000535822		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000316358		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000479069	ENST00000462170		ChiTaRS3.1			DB354940	BMPR2	chr2	203432214	-	ZNF133	chr20	18287341	-
intron-intron	ENST00000378004	ENST00000378004		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000378004	ENST00000274498		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000378004	ENST00000486650		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000274498	ENST00000378004		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000274498	ENST00000274498		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000274498	ENST00000486650		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000486650	ENST00000378004		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000486650	ENST00000274498		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000486650	ENST00000486650		ChiTaRS3.1			EL584890	ARHGAP26	chr5	142195600	-	ARHGAP26	chr5	142196463	+
intron-intron	ENST00000430627	ENST00000430627		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
intron-3UTR	ENST00000430627	ENST00000447079		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
intron-intron	ENST00000430627	ENST00000559545		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
3UTR-intron	ENST00000447079	ENST00000430627		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
3UTR-3UTR	ENST00000447079	ENST00000447079		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
3UTR-intron	ENST00000447079	ENST00000559545		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
intron-intron	ENST00000559545	ENST00000430627		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
intron-3UTR	ENST00000559545	ENST00000447079		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
intron-intron	ENST00000559545	ENST00000559545		ChiTaRS3.1			BU608770	CDK12	chr17	37690686	-	CDK12	chr17	37690498	+
3UTR-3UTR	ENST00000374810	ENST00000374810		ChiTaRS3.1			BU677110	TP53INP2	chr20	33301118	-	TP53INP2	chr20	33301070	+
3UTR-3UTR	ENST00000374810	ENST00000374809		ChiTaRS3.1			BU677110	TP53INP2	chr20	33301118	-	TP53INP2	chr20	33301070	+
3UTR-3UTR	ENST00000374809	ENST00000374810		ChiTaRS3.1			BU677110	TP53INP2	chr20	33301118	-	TP53INP2	chr20	33301070	+
3UTR-3UTR	ENST00000374809	ENST00000374809		ChiTaRS3.1			BU677110	TP53INP2	chr20	33301118	-	TP53INP2	chr20	33301070	+
5CDS-5UTR	ENST00000395785	ENST00000395785		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-3UTR	ENST00000395785	ENST00000529502		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-5UTR	ENST00000395785	ENST00000337573		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-intron	ENST00000395785	ENST00000531677		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
intron-5UTR	ENST00000529502	ENST00000395785		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
intron-3UTR	ENST00000529502	ENST00000529502		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
intron-5UTR	ENST00000529502	ENST00000337573		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
intron-intron	ENST00000529502	ENST00000531677		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-5UTR	ENST00000337573	ENST00000395785		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-3UTR	ENST00000337573	ENST00000529502		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-5UTR	ENST00000337573	ENST00000337573		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-intron	ENST00000337573	ENST00000531677		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-5UTR	ENST00000531677	ENST00000395785		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-3UTR	ENST00000531677	ENST00000529502		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-5UTR	ENST00000531677	ENST00000337573		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
5CDS-intron	ENST00000531677	ENST00000531677		ChiTaRS3.1			AI963170	EBAG9	chr8	110573112	-	EBAG9	chr8	110563046	+
intron-3CDS	ENST00000354570	ENST00000368655		ChiTaRS3.1			BF834670	MAP7	chr6	136681150	+	GATAD2B	chr1	153791310	+
intron-3CDS	ENST00000454590	ENST00000368655		ChiTaRS3.1			BF834670	MAP7	chr6	136681150	+	GATAD2B	chr1	153791310	+
intron-3CDS	ENST00000544465	ENST00000368655		ChiTaRS3.1			BF834670	MAP7	chr6	136681150	+	GATAD2B	chr1	153791310	+
intron-3CDS	ENST00000438100	ENST00000368655		ChiTaRS3.1			BF834670	MAP7	chr6	136681150	+	GATAD2B	chr1	153791310	+
intron-3CDS	ENST00000432797	ENST00000368655		ChiTaRS3.1			BF834670	MAP7	chr6	136681150	+	GATAD2B	chr1	153791310	+
intron-intron	ENST00000389757	ENST00000389757		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000389757	ENST00000389759		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000389757	ENST00000495123		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000389759	ENST00000389757		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000389759	ENST00000389759		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000389759	ENST00000495123		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000495123	ENST00000389757		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000495123	ENST00000389759		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000495123	ENST00000495123		ChiTaRS3.1			BE005140	PKP4	chr2	159393370	-	PKP4	chr2	159393456	+
intron-intron	ENST00000338368	ENST00000393561		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000338368	ENST00000222399		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000338368	ENST00000393560		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000338368	ENST00000474380		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000314191	ENST00000393561		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000314191	ENST00000222399		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000314191	ENST00000393560		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000314191	ENST00000474380		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000523565	ENST00000393561		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000523565	ENST00000222399		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000523565	ENST00000393560		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
intron-intron	ENST00000523565	ENST00000474380		ChiTaRS3.1			BF088350	PRKDC	chr8	48710913	+	LAMB1	chr7	107568347	-
5CDS-3UTR	ENST00000223273	ENST00000223273		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000448268		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000432096		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000469737		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000448268	ENST00000223273		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000448268		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000432096		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000469737		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000432096	ENST00000223273		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000448268		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000432096		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000469737		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000469737	ENST00000223273		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000448268		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000432096		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000469737		ChiTaRS3.1			AW819900	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
3UTR-3CDS	ENST00000343150	ENST00000394155		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000370690		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000535737		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000543669		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000394153		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000345434		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000539015		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000370683		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000370676		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000343150	ENST00000477080		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-3CDS	ENST00000340342	ENST00000394155		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000370690		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000535737		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000543669		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000394153		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000345434		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000539015		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000370683		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000370676		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000340342	ENST00000477080		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-3CDS	ENST00000495822	ENST00000394155		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000370690		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000535737		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000543669		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000394153		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000345434		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000539015		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000370683		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000370676		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
3UTR-intron	ENST00000495822	ENST00000477080		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-3CDS	ENST00000342020	ENST00000394155		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000370690		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000535737		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000543669		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000394153		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000345434		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000539015		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000370683		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000370676		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000342020	ENST00000477080		ChiTaRS3.1			CA411570	CTSL	chr9	90346257	-	FHL1	chrX	135291410	-
intron-intron	ENST00000245812	ENST00000245812		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000245812	ENST00000596657		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000245812	ENST00000599849		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000596657	ENST00000245812		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000596657	ENST00000596657		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000596657	ENST00000599849		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000599849	ENST00000245812		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000599849	ENST00000596657		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-intron	ENST00000599849	ENST00000599849		ChiTaRS3.1			DA204550	ALKBH7	chr19	6373283	+	ALKBH7	chr8	24771591	+
intron-3CDS	ENST00000404260	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000404260	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000404260	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000404260	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000404260	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000403625	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403625	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403625	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403625	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403625	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000406374	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406374	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406374	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406374	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406374	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000406039	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406039	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406039	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406039	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000406039	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000478569	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000478569	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000478569	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000478569	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000478569	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000490016	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000490016	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000490016	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000490016	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000490016	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000403666	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403666	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403666	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403666	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000403666	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000405643	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000405643	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000405643	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000405643	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000405643	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000261569	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000261569	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000261569	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000261569	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000261569	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-3CDS	ENST00000407621	ENST00000322507		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000407621	ENST00000345356		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000407621	ENST00000416123		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000407621	ENST00000483888		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000407621	ENST00000511023		ChiTaRS3.1			AW995260	MAST4	chr5	66340149	+	COL12A1	chr6	75865490	-
intron-intron	ENST00000514361	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000514361	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000514361	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000503028	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000503028	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000503028	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000310092	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000310092	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000310092	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000396053	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000396053	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000396053	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000408993	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000408993	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000408993	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000578778	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000578778	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000578778	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000483858	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000483858	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000483858	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000398692	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000398692	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000398692	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000506523	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000506523	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000506523	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000530235	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000530235	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000530235	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000532968	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000532968	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000532968	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000409406	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000409406	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000409406	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000515838	ENST00000412278		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000515838	ENST00000511114		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-intron	ENST00000515838	ENST00000500635		ChiTaRS3.1			BE154890	RBM4	chr11	66430382	-	RBM14-RBM4	chr11	66412741	+
intron-3CDS	ENST00000300291	ENST00000300291		ChiTaRS3.1			DB476730	NUDT21	chr16	56465238	-	NUDT21	chr16	56481757	-
3UTR-3UTR	ENST00000264607	ENST00000264607		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
3UTR-intron	ENST00000264607	ENST00000469885		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
3UTR-intron	ENST00000264607	ENST00000409297		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-3UTR	ENST00000469885	ENST00000264607		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-intron	ENST00000469885	ENST00000469885		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-intron	ENST00000469885	ENST00000409297		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-3UTR	ENST00000409297	ENST00000264607		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-intron	ENST00000409297	ENST00000469885		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-intron	ENST00000409297	ENST00000409297		ChiTaRS3.1			AW844770	ASB1	chr2	239359392	-	ASB1	chr2	239359497	+
intron-intron	ENST00000377869	ENST00000014914		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000377869	ENST00000542056		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000220616	ENST00000014914		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000220616	ENST00000542056		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000542445	ENST00000014914		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000542445	ENST00000542056		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000519543	ENST00000014914		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000519543	ENST00000542056		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000522523	ENST00000014914		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
intron-intron	ENST00000522523	ENST00000542056		ChiTaRS3.1			BF740490	TG	chr8	134101681	-	GPRC5A	chr12	13064166	+
3UTR-5UTR	ENST00000237014	ENST00000379056		ChiTaRS3.1			AI133630	TTR	chr18	29178676	-	TPT1	chr13	45915310	-
3UTR-intron	ENST00000237014	ENST00000529421		ChiTaRS3.1			AI133630	TTR	chr18	29178676	-	TPT1	chr13	45915310	-
3UTR-5UTR	ENST00000237014	ENST00000530705		ChiTaRS3.1			AI133630	TTR	chr18	29178676	-	TPT1	chr13	45915310	-
3UTR-intron	ENST00000237014	ENST00000379060		ChiTaRS3.1			AI133630	TTR	chr18	29178676	-	TPT1	chr13	45915310	-
3UTR-intron	ENST00000237014	ENST00000379055		ChiTaRS3.1			AI133630	TTR	chr18	29178676	-	TPT1	chr13	45915310	-
3UTR-intron	ENST00000237014	ENST00000309246		ChiTaRS3.1			AI133630	TTR	chr18	29178676	-	TPT1	chr13	45915310	-
intron-3CDS	ENST00000252996	ENST00000252996		ChiTaRS3.1			BF331400	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000252996	ENST00000609045		ChiTaRS3.1			BF331400	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-3CDS	ENST00000609045	ENST00000252996		ChiTaRS3.1			BF331400	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000609045	ENST00000609045		ChiTaRS3.1			BF331400	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000262966	ENST00000398174		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000340852		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000335574		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000376127		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000492709		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000398174		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000340852		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000335574		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000376127		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000492709		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000398174		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000340852		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000335574		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000376127		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000492709		ChiTaRS3.1			BF921400	MPND	chr19	4359126	+	HM13	chr20	30150711	+
3UTR-3UTR	ENST00000263277	ENST00000263277		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
3UTR-intron	ENST00000263277	ENST00000538399		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
3UTR-intron	ENST00000263277	ENST00000540884		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
intron-3UTR	ENST00000538399	ENST00000263277		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
intron-intron	ENST00000538399	ENST00000538399		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
intron-intron	ENST00000538399	ENST00000540884		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
intron-3UTR	ENST00000540884	ENST00000263277		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
intron-intron	ENST00000540884	ENST00000538399		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
intron-intron	ENST00000540884	ENST00000540884		ChiTaRS3.1			BF684520	EHD2	chr19	48245991	-	EHD2	chr19	48246037	+
3UTR-intron	ENST00000534336	ENST00000440973		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000338799		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000456483		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000443427		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000206249		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000406599		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000427531		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
3UTR-intron	ENST00000534336	ENST00000482101		ChiTaRS3.1			AI908660	MALAT1	chr11	65268104	-	ESR1	chr6	152151630	+
intron-intron	ENST00000400473	ENST00000009041		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000400473	ENST00000544203		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000400473	ENST00000434197		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000400473	ENST00000396013		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000256925	ENST00000009041		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000256925	ENST00000544203		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000256925	ENST00000434197		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000256925	ENST00000396013		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000585061	ENST00000009041		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000585061	ENST00000544203		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000585061	ENST00000434197		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000585061	ENST00000396013		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000420687	ENST00000009041		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000420687	ENST00000544203		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000420687	ENST00000434197		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000420687	ENST00000396013		ChiTaRS3.1			BQ347130	CABLES1	chr18	20784426	+	STARD3NL	chr7	38259474	+
intron-intron	ENST00000392209	ENST00000392209		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000420822		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000295414		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000339882		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000468768		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000392209		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000420822		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000295414		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000339882		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000468768		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000392209		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000420822		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000295414		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000339882		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000468768		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000392209		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000420822		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000295414		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000339882		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000468768		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000392209		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000420822		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000295414		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000339882		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000468768		ChiTaRS3.1			AA829090	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000540393	ENST00000271277		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000540393	ENST00000607039		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000254695	ENST00000271277		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000254695	ENST00000607039		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000366401	ENST00000271277		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000366401	ENST00000607039		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000542807	ENST00000271277		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000542807	ENST00000607039		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000574709	ENST00000271277		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000574709	ENST00000607039		ChiTaRS3.1			BE181370	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
5CDS-intron	ENST00000326639	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000326639		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000264584		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000441387		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000354456		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000506199		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000512292		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000394288		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000432347		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000427266		ChiTaRS3.1			AW003560	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
Frame-shit	ENST00000216038	ENST00000216038		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
5CDS-intron	ENST00000216038	ENST00000451746		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
5CDS-5UTR	ENST00000216038	ENST00000476619		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-3CDS	ENST00000451746	ENST00000216038		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-intron	ENST00000451746	ENST00000451746		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-5UTR	ENST00000451746	ENST00000476619		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-3CDS	ENST00000476619	ENST00000216038		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-intron	ENST00000476619	ENST00000451746		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-5UTR	ENST00000476619	ENST00000476619		ChiTaRS3.1			AA299980	RTCB	chr22	32792066	-	RTCB	chr22	32795732	-
intron-intron	ENST00000262765	ENST00000262765		ChiTaRS3.1			BE061270	QRICH2	chr17	74278130	-	QRICH2	chr17	74278701	-
intron-intron	ENST00000409592	ENST00000516892		ChiTaRS3.1			BF956860	DOCK10	chr2	225645518	-	MEG3	chr14	101319933	+
intron-intron	ENST00000258390	ENST00000516892		ChiTaRS3.1			BF956860	DOCK10	chr2	225645518	-	MEG3	chr14	101319933	+
intron-intron	ENST00000474102	ENST00000516892		ChiTaRS3.1			BF956860	DOCK10	chr2	225645518	-	MEG3	chr14	101319933	+
intron-intron	ENST00000311862	ENST00000217246		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000311862	ENST00000310348		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000311862	ENST00000464883		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000311862	ENST00000402914		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000311862	ENST00000378058		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000311862	ENST00000407045		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000533605	ENST00000217246		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000533605	ENST00000310348		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000533605	ENST00000464883		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000533605	ENST00000402914		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000533605	ENST00000378058		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000533605	ENST00000407045		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000525955	ENST00000217246		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000525955	ENST00000310348		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000525955	ENST00000464883		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000525955	ENST00000402914		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000525955	ENST00000378058		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
intron-intron	ENST00000525955	ENST00000407045		ChiTaRS3.1			BF812990	PRG2	chr11	57181206	+	MACROD2	chr20	15520878	-
Frame-shit	ENST00000355431	ENST00000355431		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000355431	ENST00000348476		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000355431	ENST00000395168		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000355431	ENST00000431317		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
5CDS-intron	ENST00000355431	ENST00000553355		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000348476	ENST00000355431		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000348476	ENST00000348476		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000348476	ENST00000395168		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000348476	ENST00000431317		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
5CDS-intron	ENST00000348476	ENST00000553355		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000395168	ENST00000355431		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000395168	ENST00000348476		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000395168	ENST00000395168		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000395168	ENST00000431317		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
5CDS-intron	ENST00000395168	ENST00000553355		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000431317	ENST00000355431		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000431317	ENST00000348476		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000431317	ENST00000395168		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
Frame-shit	ENST00000431317	ENST00000431317		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
5CDS-intron	ENST00000431317	ENST00000553355		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
intron-3CDS	ENST00000553355	ENST00000355431		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
intron-3CDS	ENST00000553355	ENST00000348476		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
intron-3CDS	ENST00000553355	ENST00000395168		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
intron-3CDS	ENST00000553355	ENST00000431317		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
intron-intron	ENST00000553355	ENST00000553355		ChiTaRS3.1			BQ575110	ARID4A	chr14	58813770	-	ARID4A	chr14	58811438	+
intron-3CDS	ENST00000261921	ENST00000319410		ChiTaRS3.1			BG113950	LOXL1	chr15	74237821	+	KARS	chr16	75662519	-
intron-3CDS	ENST00000261921	ENST00000302445		ChiTaRS3.1			BG113950	LOXL1	chr15	74237821	+	KARS	chr16	75662519	-
intron-intron	ENST00000261921	ENST00000568378		ChiTaRS3.1			BG113950	LOXL1	chr15	74237821	+	KARS	chr16	75662519	-
intron-3CDS	ENST00000567675	ENST00000319410		ChiTaRS3.1			BG113950	LOXL1	chr15	74237821	+	KARS	chr16	75662519	-
intron-3CDS	ENST00000567675	ENST00000302445		ChiTaRS3.1			BG113950	LOXL1	chr15	74237821	+	KARS	chr16	75662519	-
intron-intron	ENST00000567675	ENST00000568378		ChiTaRS3.1			BG113950	LOXL1	chr15	74237821	+	KARS	chr16	75662519	-
intron-5UTR	ENST00000371989	ENST00000331825		ChiTaRS3.1			BF920940	SURF4	chr9	136229418	-	FTL	chr19	49468689	-
intron-5UTR	ENST00000485435	ENST00000331825		ChiTaRS3.1			BF920940	SURF4	chr9	136229418	-	FTL	chr19	49468689	-
intron-5UTR	ENST00000545297	ENST00000331825		ChiTaRS3.1			BF920940	SURF4	chr9	136229418	-	FTL	chr19	49468689	-
intron-5UTR	ENST00000467910	ENST00000331825		ChiTaRS3.1			BF920940	SURF4	chr9	136229418	-	FTL	chr19	49468689	-
intron-5UTR	ENST00000371991	ENST00000331825		ChiTaRS3.1			BF920940	SURF4	chr9	136229418	-	FTL	chr19	49468689	-
intron-3UTR	ENST00000566780	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000566780	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000566780	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000406884	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000406884	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000406884	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000539474	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000539474	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000539474	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000402655	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000402655	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000402655	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000408984	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000408984	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000408984	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000355860	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000355860	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000355860	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000565791	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000565791	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000565791	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000569818	ENST00000389757		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-3UTR	ENST00000569818	ENST00000389759		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000569818	ENST00000495123		ChiTaRS3.1			BI042280	WWOX	chr16	78535089	+	PKP4	chr2	159537213	+
intron-intron	ENST00000373823	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373823	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373808	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000436847	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000449733	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000412819	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000394353	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000341272	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000545652	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373818	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000485767	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373807	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000344691		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000325074		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000437180		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000300305		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000399240		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000486278		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000494829		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-intron	ENST00000373806	ENST00000358356		ChiTaRS3.1			BE829610	GSN	chr9	124089088	+	RUNX1	chr21	36233848	+
intron-3CDS	ENST00000413405	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000413405	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000413405	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000413405	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000413405	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000413405	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000414457	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000414457	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000414457	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000414457	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000414457	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000414457	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000446807	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000446807	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000446807	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000446807	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000446807	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000446807	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000423223	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000423223	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000423223	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000423223	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000423223	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000423223	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000445521	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000445521	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000445521	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000445521	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000445521	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000445521	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000455774	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000455774	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000455774	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000455774	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000455774	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000455774	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000430295	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000430295	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000430295	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000430295	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000430295	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000430295	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000608994	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000608994	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000608994	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000608994	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000608994	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000608994	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000609413	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000609413	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000609413	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000609413	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000609413	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000609413	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000537908	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000537908	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000537908	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000537908	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000537908	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000537908	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000427063	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000427063	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000427063	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000427063	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000427063	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000427063	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000438202	ENST00000375400		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000438202	ENST00000375398		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000438202	ENST00000355867		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-3CDS	ENST00000438202	ENST00000535393		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000438202	ENST00000460007		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000438202	ENST00000538146		ChiTaRS3.1			BI038440	PTCHD3P1	chr10	29760156	-	SVIL	chr10	29801686	-
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266528	FLI1	chr11	128652200	+	EWSR1	chr22	29685275	+
3UTR-3CDS	ENST00000326003	ENST00000326003		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000326003	ENST00000597483		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000326003	ENST00000593997		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000326003	ENST00000595952		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-3UTR	ENST00000326003	ENST00000360617		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-3CDS	ENST00000597483	ENST00000326003		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-intron	ENST00000597483	ENST00000597483		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-intron	ENST00000597483	ENST00000593997		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-intron	ENST00000597483	ENST00000595952		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-3UTR	ENST00000597483	ENST00000360617		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-3CDS	ENST00000593997	ENST00000326003		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-intron	ENST00000593997	ENST00000597483		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-intron	ENST00000593997	ENST00000593997		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-intron	ENST00000593997	ENST00000595952		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
intron-3UTR	ENST00000593997	ENST00000360617		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-3CDS	ENST00000595952	ENST00000326003		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000595952	ENST00000597483		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000595952	ENST00000593997		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000595952	ENST00000595952		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-3UTR	ENST00000595952	ENST00000360617		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-3CDS	ENST00000360617	ENST00000326003		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000360617	ENST00000597483		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000360617	ENST00000593997		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-intron	ENST00000360617	ENST00000595952		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
3UTR-3UTR	ENST00000360617	ENST00000360617		ChiTaRS3.1			AA226360	KLK3	chr19	51363418	+	KLK3	chr19	51363332	-
In-frame	ENST00000420890	ENST00000496455		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
5CDS-intron	ENST00000420890	ENST00000295920		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
5CDS-intron	ENST00000420890	ENST00000476145		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-3CDS	ENST00000480419	ENST00000496455		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-intron	ENST00000480419	ENST00000295920		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-intron	ENST00000480419	ENST00000476145		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
In-frame	ENST00000409284	ENST00000496455		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
5CDS-intron	ENST00000409284	ENST00000295920		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
5CDS-intron	ENST00000409284	ENST00000476145		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-3CDS	ENST00000295723	ENST00000496455		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-intron	ENST00000295723	ENST00000295920		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-intron	ENST00000295723	ENST00000476145		ChiTaRS3.1			AU132130	CCDC141	chr2	179912011	-	GMPS	chr3	155611305	+
intron-3CDS	ENST00000366630	ENST00000366630		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000366630	ENST00000262861		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000366630	ENST00000308942		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000366630	ENST00000486472		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000262861	ENST00000366630		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000262861	ENST00000262861		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000262861	ENST00000308942		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000262861	ENST00000486472		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000308942	ENST00000366630		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000308942	ENST00000262861		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000308942	ENST00000308942		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000308942	ENST00000486472		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000486472	ENST00000366630		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-3CDS	ENST00000486472	ENST00000262861		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000486472	ENST00000308942		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
intron-intron	ENST00000486472	ENST00000486472		ChiTaRS3.1			BF085760	SIPA1L2	chr1	232601133	-	SIPA1L2	chr1	232607211	+
3UTR-3UTR	ENST00000430624	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000430624	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000430624	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000430624	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000430624	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000430624	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000430624	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000432329	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000432329	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000432329	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000432329	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000432329	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000432329	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000432329	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000353267	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000353267	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000353267	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000353267	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000353267	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000353267	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000353267	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000536726	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000536726	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000536726	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-intron	ENST00000536726	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000536726	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-intron	ENST00000536726	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-intron	ENST00000536726	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000374397	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000374397	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000374397	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000374397	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000374397	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000374397	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000374397	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000539789	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000539789	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000539789	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-intron	ENST00000539789	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3UTR	ENST00000539789	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-intron	ENST00000539789	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-intron	ENST00000539789	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000451164	ENST00000430624		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000451164	ENST00000432329		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000451164	ENST00000353267		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000451164	ENST00000536726		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-3UTR	ENST00000451164	ENST00000374397		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000451164	ENST00000539789		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
3UTR-intron	ENST00000451164	ENST00000451164		ChiTaRS3.1			AA092330	CREB1	chr2	208462198	-	CREB1	chr2	208462313	+
intron-3CDS	ENST00000407071	ENST00000373830		ChiTaRS3.1			BE008620	KIF26B	chr1	245349463	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000407071	ENST00000495995		ChiTaRS3.1			BE008620	KIF26B	chr1	245349463	-	TRNAU1AP	chr1	28893865	+
intron-3CDS	ENST00000366518	ENST00000373830		ChiTaRS3.1			BE008620	KIF26B	chr1	245349463	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000366518	ENST00000495995		ChiTaRS3.1			BE008620	KIF26B	chr1	245349463	-	TRNAU1AP	chr1	28893865	+
intron-3CDS	ENST00000479506	ENST00000373830		ChiTaRS3.1			BE008620	KIF26B	chr1	245349463	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000479506	ENST00000495995		ChiTaRS3.1			BE008620	KIF26B	chr1	245349463	-	TRNAU1AP	chr1	28893865	+
intron-3CDS	ENST00000393249	ENST00000373297		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000393249	ENST00000314607		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-intron	ENST00000393249	ENST00000482131		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000261183	ENST00000373297		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000261183	ENST00000314607		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-intron	ENST00000261183	ENST00000482131		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000393250	ENST00000373297		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000393250	ENST00000314607		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-intron	ENST00000393250	ENST00000482131		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000552178	ENST00000373297		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-3CDS	ENST00000552178	ENST00000314607		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-intron	ENST00000552178	ENST00000482131		ChiTaRS3.1			BF766720	OSBPL8	chr12	76791612	-	ZMYM4	chr1	35846890	-
intron-intron	ENST00000405709	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000405709	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000331762	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000331762	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000452895	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000452895	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000415362	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000415362	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000447215	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000447215	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000437687	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000437687	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000489381	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000489381	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000450877	ENST00000245907		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000450877	ENST00000599668		ChiTaRS3.1			BG569290	IMMP2L	chr7	110476558	-	C3	chr19	6718071	-
intron-intron	ENST00000437600	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000437600	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000292538	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000292538	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000393824	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000393824	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000547394	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000547394	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000360264	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000360264	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000425244	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000425244	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000292535	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000292535	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000549414	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000549414	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000556210	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000556210	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000550008	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000550008	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000546411	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000546411	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000560541	ENST00000285018		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
intron-intron	ENST00000560541	ENST00000497808		ChiTaRS3.1			BF885360	CUX1	chr7	101524832	-	WNT7A	chr3	13899311	-
5CDS-intron	ENST00000542955	ENST00000542955		ChiTaRS3.1			BI046620	IGFBP4	chr17	38610218	-	IGFBP4	chr17	38613608	-
5CDS-3UTR	ENST00000542955	ENST00000269593		ChiTaRS3.1			BI046620	IGFBP4	chr17	38610218	-	IGFBP4	chr17	38613608	-
5CDS-intron	ENST00000269593	ENST00000542955		ChiTaRS3.1			BI046620	IGFBP4	chr17	38610218	-	IGFBP4	chr17	38613608	-
5CDS-3UTR	ENST00000269593	ENST00000269593		ChiTaRS3.1			BI046620	IGFBP4	chr17	38610218	-	IGFBP4	chr17	38613608	-
3UTR-3UTR	ENST00000260731	ENST00000260731		ChiTaRS3.1			BQ212450	KIF11	chr10	94414568	-	KIF11	chr10	94414629	+
intron-3UTR	ENST00000255764	ENST00000310924		ChiTaRS3.1			BF822580	MED10	chr5	6378073	+	TBC1D16	chr17	77910474	+
intron-3UTR	ENST00000255764	ENST00000576768		ChiTaRS3.1			BF822580	MED10	chr5	6378073	+	TBC1D16	chr17	77910474	+
intron-intron	ENST00000255764	ENST00000340848		ChiTaRS3.1			BF822580	MED10	chr5	6378073	+	TBC1D16	chr17	77910474	+
intron-intron	ENST00000255764	ENST00000572862		ChiTaRS3.1			BF822580	MED10	chr5	6378073	+	TBC1D16	chr17	77910474	+
intron-intron	ENST00000255764	ENST00000570373		ChiTaRS3.1			BF822580	MED10	chr5	6378073	+	TBC1D16	chr17	77910474	+
3UTR-intron	ENST00000377107	ENST00000420436		ChiTaRS3.1			AI497670	USP11	chrX	47107462	-	PRODH	chr22	18913475	+
3UTR-intron	ENST00000377107	ENST00000334029		ChiTaRS3.1			AI497670	USP11	chrX	47107462	-	PRODH	chr22	18913475	+
3UTR-intron	ENST00000377107	ENST00000357068		ChiTaRS3.1			AI497670	USP11	chrX	47107462	-	PRODH	chr22	18913475	+
3UTR-intron	ENST00000218348	ENST00000420436		ChiTaRS3.1			AI497670	USP11	chrX	47107462	-	PRODH	chr22	18913475	+
3UTR-intron	ENST00000218348	ENST00000334029		ChiTaRS3.1			AI497670	USP11	chrX	47107462	-	PRODH	chr22	18913475	+
3UTR-intron	ENST00000218348	ENST00000357068		ChiTaRS3.1			AI497670	USP11	chrX	47107462	-	PRODH	chr22	18913475	+
intron-intron	ENST00000399322	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000399322	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000258767	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403951	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000402815	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000407950	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000444700	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000406247	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000399322		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000258767		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000403951		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000402815		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000407950		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000444700		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000406247		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
intron-intron	ENST00000403963	ENST00000403963		ChiTaRS3.1			BF961320	DGKB	chr7	14775820	+	DGKB	chr7	14652965	+
5CDS-3UTR	ENST00000301740	ENST00000225388		ChiTaRS3.1			BE010610	SRRM2	chr16	2813642	-	NUFIP2	chr17	27584218	+
5CDS-intron	ENST00000301740	ENST00000579665		ChiTaRS3.1			BE010610	SRRM2	chr16	2813642	-	NUFIP2	chr17	27584218	+
intron-3UTR	ENST00000574593	ENST00000225388		ChiTaRS3.1			BE010610	SRRM2	chr16	2813642	-	NUFIP2	chr17	27584218	+
intron-intron	ENST00000574593	ENST00000579665		ChiTaRS3.1			BE010610	SRRM2	chr16	2813642	-	NUFIP2	chr17	27584218	+
intron-3UTR	ENST00000320389	ENST00000273221		ChiTaRS3.1			BF959690	KIF1A	chr2	241704891	+	IQSEC1	chr3	12939887	-
intron-intron	ENST00000320389	ENST00000473088		ChiTaRS3.1			BF959690	KIF1A	chr2	241704891	+	IQSEC1	chr3	12939887	-
intron-3UTR	ENST00000498729	ENST00000273221		ChiTaRS3.1			BF959690	KIF1A	chr2	241704891	+	IQSEC1	chr3	12939887	-
intron-intron	ENST00000498729	ENST00000473088		ChiTaRS3.1			BF959690	KIF1A	chr2	241704891	+	IQSEC1	chr3	12939887	-
intron-3CDS	ENST00000413918	ENST00000378251		ChiTaRS3.1			CN357810	DIABLO	chr12	122710552	+	LRRC47	chr1	3700600	-
intron-3CDS	ENST00000353548	ENST00000378251		ChiTaRS3.1			CN357810	DIABLO	chr12	122710552	+	LRRC47	chr1	3700600	-
intron-3CDS	ENST00000443649	ENST00000378251		ChiTaRS3.1			CN357810	DIABLO	chr12	122710552	+	LRRC47	chr1	3700600	-
intron-3CDS	ENST00000464942	ENST00000378251		ChiTaRS3.1			CN357810	DIABLO	chr12	122710552	+	LRRC47	chr1	3700600	-
intron-3CDS	ENST00000267169	ENST00000378251		ChiTaRS3.1			CN357810	DIABLO	chr12	122710552	+	LRRC47	chr1	3700600	-
intron-3CDS	ENST00000475784	ENST00000378251		ChiTaRS3.1			CN357810	DIABLO	chr12	122710552	+	LRRC47	chr1	3700600	-
3UTR-3UTR	ENST00000265113	ENST00000265113		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
3UTR-intron	ENST00000265113	ENST00000506725		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
3UTR-3UTR	ENST00000265113	ENST00000381918		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
intron-3UTR	ENST00000506725	ENST00000265113		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
intron-intron	ENST00000506725	ENST00000506725		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
intron-3UTR	ENST00000506725	ENST00000381918		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
3UTR-3UTR	ENST00000381918	ENST00000265113		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
3UTR-intron	ENST00000381918	ENST00000506725		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
3UTR-3UTR	ENST00000381918	ENST00000381918		ChiTaRS3.1			W27410	SLC1A3	chr5	36687199	-	SLC1A3	chr5	36687055	+
intron-3UTR	ENST00000367739	ENST00000256689		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367739	ENST00000551374		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367739	ENST00000547252		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-3UTR	ENST00000543628	ENST00000256689		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000543628	ENST00000551374		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000543628	ENST00000547252		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-3UTR	ENST00000367735	ENST00000256689		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367735	ENST00000551374		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367735	ENST00000547252		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-3UTR	ENST00000478333	ENST00000256689		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000478333	ENST00000551374		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000478333	ENST00000547252		ChiTaRS3.1			AI133230	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000230085	ENST00000230085		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000230085	ENST00000426155		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000230085	ENST00000349379		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000230085	ENST00000368982		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000426155	ENST00000230085		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000426155	ENST00000426155		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000426155	ENST00000349379		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000426155	ENST00000368982		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000349379	ENST00000230085		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000349379	ENST00000426155		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000349379	ENST00000349379		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000349379	ENST00000368982		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000368982	ENST00000230085		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000368982	ENST00000426155		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000368982	ENST00000349379		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-intron	ENST00000368982	ENST00000368982		ChiTaRS3.1			AW025940	SNX3	chr6	108570884	+	SNX3	chr6	108569392	+
intron-3UTR	ENST00000345136	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000345136	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000345136	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000357649	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000357649	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000357649	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000354589	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000354589	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000354589	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000398774	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000398774	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000398774	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000322810	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000322810	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000322810	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000354958	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000354958	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000354958	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000356346	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000356346	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000356346	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000436759	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000436759	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000436759	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000527096	ENST00000465039		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000527096	ENST00000440097		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-3UTR	ENST00000527096	ENST00000273317		ChiTaRS3.1			BF841120	PLEC	chr8	144996475	+	LIMD1	chr3	45714226	+
intron-intron	ENST00000343289	ENST00000343289		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000343289	ENST00000404739		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000343289	ENST00000369857		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000343289	ENST00000423468		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000343289	ENST00000470299		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000404739	ENST00000343289		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000404739	ENST00000404739		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000404739	ENST00000369857		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000404739	ENST00000423468		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000404739	ENST00000470299		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000369857	ENST00000343289		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000369857	ENST00000404739		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000369857	ENST00000369857		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000369857	ENST00000423468		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000369857	ENST00000470299		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000423468	ENST00000343289		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000423468	ENST00000404739		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000423468	ENST00000369857		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000423468	ENST00000423468		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000423468	ENST00000470299		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000470299	ENST00000343289		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000470299	ENST00000404739		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000470299	ENST00000369857		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000470299	ENST00000423468		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-intron	ENST00000470299	ENST00000470299		ChiTaRS3.1			BE936930	NT5C2	chr10	104879603	+	NT5C2	chr10	104878417	+
intron-3UTR	ENST00000461783	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000461783	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000449545	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000449545	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000367174	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000367174	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000456144	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000456144	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000318981	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000318981	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000360366	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000360366	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000529824	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000529824	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000456877	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000456877	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000528391	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000528391	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000275246	ENST00000382038		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3UTR	ENST00000275246	ENST00000341754		ChiTaRS3.1			BU629140	TIAM2	chr6	155284994	-	RAD1	chr5	34908559	+
intron-3CDS	ENST00000588757	ENST00000377452		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
intron-3UTR	ENST00000588757	ENST00000494921		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
Frame-shit	ENST00000420359	ENST00000377452		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
5CDS-3UTR	ENST00000420359	ENST00000494921		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
Frame-shit	ENST00000449624	ENST00000377452		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
5CDS-3UTR	ENST00000449624	ENST00000494921		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
Frame-shit	ENST00000421097	ENST00000377452		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
5CDS-3UTR	ENST00000421097	ENST00000494921		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
Frame-shit	ENST00000590958	ENST00000377452		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
5CDS-3UTR	ENST00000590958	ENST00000494921		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
Frame-shit	ENST00000393818	ENST00000377452		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
5CDS-3UTR	ENST00000393818	ENST00000494921		ChiTaRS3.1			BE252620	COASY	chr17	40716570	-	DTD1	chr20	18576749	+
intron-intron	ENST00000517820	ENST00000352456		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000595018		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000392006		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000378215		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000602130		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000593587		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000263367		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000517820	ENST00000594207		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000352456		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000595018		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000392006		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000378215		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000602130		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000593587		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000263367		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000520733	ENST00000594207		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000352456		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000595018		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000392006		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000378215		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000602130		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000593587		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000263367		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
3UTR-intron	ENST00000309822	ENST00000594207		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000352456		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000595018		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000392006		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000378215		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000602130		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000593587		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000263367		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000357148	ENST00000594207		ChiTaRS3.1			CN354390	UTP23	chr8	117785558	+	HNRNPUL1	chr19	41808383	+
intron-intron	ENST00000401903	ENST00000394156		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000401903	ENST00000268603		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000401903	ENST00000566827		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000401903	ENST00000569624		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000316495	ENST00000394156		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000316495	ENST00000268603		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000316495	ENST00000566827		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000316495	ENST00000569624		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000478137	ENST00000394156		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000478137	ENST00000268603		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000478137	ENST00000566827		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
intron-intron	ENST00000478137	ENST00000569624		ChiTaRS3.1			BE677740	ZFAND2A	chr7	1192749	+	CDH11	chr16	65149789	+
3UTR-intron	ENST00000373566	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000373566	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000373566	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000373563	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000373563	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000373563	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409480	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409480	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409480	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409547	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409547	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409547	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409196	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409196	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409196	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409451	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409451	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
3UTR-intron	ENST00000409451	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000482666	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000482666	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000482666	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000452341	ENST00000496390		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000452341	ENST00000369575		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000452341	ENST00000424127		ChiTaRS3.1			BI013040	GIGYF2	chr2	233721606	+	GAB3	chrX	153965890	+
intron-intron	ENST00000393240	ENST00000261396		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000393240	ENST00000537506		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000393240	ENST00000366678		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000393240	ENST00000485119		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000261205	ENST00000261396		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000261205	ENST00000537506		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000261205	ENST00000366678		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000261205	ENST00000485119		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000457153	ENST00000261396		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000457153	ENST00000537506		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000457153	ENST00000366678		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000457153	ENST00000485119		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000552744	ENST00000261396		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000552744	ENST00000537506		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000552744	ENST00000366678		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000552744	ENST00000485119		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000549454	ENST00000261396		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000549454	ENST00000537506		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000549454	ENST00000366678		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
intron-intron	ENST00000549454	ENST00000485119		ChiTaRS3.1			AA326630	SYT1	chr12	79470412	+	NUP133	chr1	229611596	-
Frame-shit	ENST00000372201	ENST00000372201		ChiTaRS3.1			BQ300580	PLK3	chr1	45271046	+	PLK3	chr1	45268728	+
5CDS-3UTR	ENST00000372201	ENST00000465443		ChiTaRS3.1			BQ300580	PLK3	chr1	45271046	+	PLK3	chr1	45268728	+
3UTR-3CDS	ENST00000465443	ENST00000372201		ChiTaRS3.1			BQ300580	PLK3	chr1	45271046	+	PLK3	chr1	45268728	+
3UTR-3UTR	ENST00000465443	ENST00000465443		ChiTaRS3.1			BQ300580	PLK3	chr1	45271046	+	PLK3	chr1	45268728	+
intron-5UTR	ENST00000376694	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000376694	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000376694	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000376688	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000376688	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000376688	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000552062	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000552062	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000552062	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000414873	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000414873	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000414873	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000551636	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000551636	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000551636	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000485505	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000485505	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000485505	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548732	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548732	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000548732	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000421984	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000421984	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000421984	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548642	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548642	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000548642	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000476225	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000476225	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000476225	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550694	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550694	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000550694	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000427091	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000427091	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000427091	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548212	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548212	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000548212	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000498654	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000498654	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000498654	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550702	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550702	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000550702	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000429524	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000429524	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000429524	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000552676	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000552676	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000552676	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000493180	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000493180	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000493180	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550969	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550969	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000550969	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000259930	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000259930	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000259930	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000549109	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000549109	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000549109	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000492678	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000492678	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000492678	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548653	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000548653	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000548653	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000431059	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000431059	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000431059	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550400	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000550400	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000550400	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000490570	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000490570	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000490570	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
5CDS-5UTR	ENST00000546888	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
5CDS-5UTR	ENST00000546888	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
5CDS-intron	ENST00000546888	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
5CDS-5UTR	ENST00000430090	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
5CDS-5UTR	ENST00000430090	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
5CDS-intron	ENST00000430090	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000552836	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000552836	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000552836	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000469125	ENST00000375114		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-5UTR	ENST00000469125	ENST00000246194		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-intron	ENST00000469125	ENST00000493399		ChiTaRS3.1			AW390130	TRIM15	chr6	1470298	-	RALY	chr20	32581851	+
intron-3CDS	ENST00000609205	ENST00000389048		ChiTaRS3.1			AF295078	MSN	chrX	64958831	+	ALK	chr2	29446377	-
intron-intron	ENST00000609205	ENST00000431873		ChiTaRS3.1			AF295078	MSN	chrX	64958831	+	ALK	chr2	29446377	-
intron-intron	ENST00000609205	ENST00000498037		ChiTaRS3.1			AF295078	MSN	chrX	64958831	+	ALK	chr2	29446377	-
intron-3CDS	ENST00000360270	ENST00000389048		ChiTaRS3.1			AF295078	MSN	chrX	64958831	+	ALK	chr2	29446377	-
intron-intron	ENST00000360270	ENST00000431873		ChiTaRS3.1			AF295078	MSN	chrX	64958831	+	ALK	chr2	29446377	-
intron-intron	ENST00000360270	ENST00000498037		ChiTaRS3.1			AF295078	MSN	chrX	64958831	+	ALK	chr2	29446377	-
intron-intron	ENST00000409068	ENST00000425792		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000409068	ENST00000396703		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000409085	ENST00000425792		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000409085	ENST00000396703		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000406297	ENST00000425792		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000406297	ENST00000396703		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000470281	ENST00000425792		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-intron	ENST00000470281	ENST00000396703		ChiTaRS3.1			AI263440	AAK1	chr2	69800818	+	UBE2E2	chr3	23554621	-
intron-3UTR	ENST00000558530	ENST00000558530		ChiTaRS3.1			BU679590	TGIF2-C20orf24	chr20	35240812	-	TGIF2-C20orf24	chr20	35240632	+
intron-intron	ENST00000228515	ENST00000367816		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000228515	ENST00000367815		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000228515	ENST00000499679		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000228515	ENST00000367813		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000550461	ENST00000367816		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000550461	ENST00000367815		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000550461	ENST00000499679		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
intron-intron	ENST00000550461	ENST00000367813		ChiTaRS3.1			AI902420	CSRNP2	chr12	51470178	-	ATP1B1	chr1	169077152	+
3UTR-3UTR	ENST00000379887	ENST00000379887		ChiTaRS3.1			BG282810	ARIH1	chr15	72878747	-	ARIH1	chr15	72878767	+
3UTR-intron	ENST00000379887	ENST00000562891		ChiTaRS3.1			BG282810	ARIH1	chr15	72878747	-	ARIH1	chr15	72878767	+
intron-3UTR	ENST00000562891	ENST00000379887		ChiTaRS3.1			BG282810	ARIH1	chr15	72878747	-	ARIH1	chr15	72878767	+
intron-intron	ENST00000562891	ENST00000562891		ChiTaRS3.1			BG282810	ARIH1	chr15	72878747	-	ARIH1	chr15	72878767	+
intron-intron	ENST00000430275	ENST00000368679		ChiTaRS3.1			BF990220	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000430275	ENST00000368676		ChiTaRS3.1			BF990220	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000430275	ENST00000467145		ChiTaRS3.1			BF990220	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000336219	ENST00000544172		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000397501		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000338238		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000346049		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000420218		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000517339		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000519650		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000336219	ENST00000397497		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000544172		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000397501		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000338238		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000346049		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000420218		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000517339		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000519650		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
intron-intron	ENST00000392590	ENST00000397497		ChiTaRS3.1			AW859660	CDCA4	chr14	105482575	+	PTK2B	chr8	27202136	+
In-frame	ENST00000568606	ENST00000366595		ChiTaRS3.1			BU075210	SQRDL	chr15	45981354	-	NID1	chr1	236143879	+
In-frame	ENST00000568606	ENST00000264187		ChiTaRS3.1			BU075210	SQRDL	chr15	45981354	-	NID1	chr1	236143879	+
In-frame	ENST00000260324	ENST00000366595		ChiTaRS3.1			BU075210	SQRDL	chr15	45981354	-	NID1	chr1	236143879	+
In-frame	ENST00000260324	ENST00000264187		ChiTaRS3.1			BU075210	SQRDL	chr15	45981354	-	NID1	chr1	236143879	+
intron-intron	ENST00000323851	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000323851	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000323851	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000323851	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000323851	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000323851	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000323851	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000323851	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000354944	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000354944	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000521414	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000521414	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000537882	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000537882	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000414097	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000414097	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000518176	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518176	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000522476	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000522476	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000323851		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000354944		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000521414		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000537882		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-5UTR	ENST00000518066	ENST00000414097		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000518176		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000522476		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-intron	ENST00000518066	ENST00000518066		ChiTaRS3.1			AU099490	NDRG1	chr8	134250570	-	NDRG1	chr8	134309495	-
intron-3UTR	ENST00000468758	ENST00000523629		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-3UTR	ENST00000468758	ENST00000396218		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-3UTR	ENST00000468758	ENST00000265814		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000360348		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000436581		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000520724		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000518844		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000522163		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000422361		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000468758	ENST00000521553		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-3UTR	ENST00000409645	ENST00000523629		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-3UTR	ENST00000409645	ENST00000396218		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-3UTR	ENST00000409645	ENST00000265814		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000360348		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000436581		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000520724		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000518844		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000522163		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000422361		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000409645	ENST00000521553		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-3UTR	ENST00000281923	ENST00000523629		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-3UTR	ENST00000281923	ENST00000396218		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-3UTR	ENST00000281923	ENST00000265814		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000360348		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000436581		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000520724		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000518844		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000522163		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000422361		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
intron-intron	ENST00000281923	ENST00000521553		ChiTaRS3.1			AA249270	MGAT5	chr2	135207659	+	RUNX1T1	chr8	92971654	-
3UTR-intron	ENST00000474629	ENST00000392272		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
3UTR-intron	ENST00000474629	ENST00000368173		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
3UTR-intron	ENST00000474629	ENST00000360089		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
3UTR-intron	ENST00000474629	ENST00000359209		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
3UTR-intron	ENST00000474629	ENST00000416935		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
3UTR-3UTR	ENST00000474629	ENST00000368172		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-intron	ENST00000475640	ENST00000392272		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-intron	ENST00000475640	ENST00000368173		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-intron	ENST00000475640	ENST00000360089		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-intron	ENST00000475640	ENST00000359209		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-intron	ENST00000475640	ENST00000416935		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-3UTR	ENST00000475640	ENST00000368172		ChiTaRS3.1			AI143110	PARP14	chr3	122449447	-	KIRREL	chr1	158066724	-
intron-3CDS	ENST00000409613	ENST00000265165		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409613	ENST00000379951		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409613	ENST00000438313		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409613	ENST00000510624		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409613	ENST00000512172		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-intron	ENST00000409613	ENST00000503879		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000264059	ENST00000265165		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000264059	ENST00000379951		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000264059	ENST00000438313		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000264059	ENST00000510624		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000264059	ENST00000512172		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-intron	ENST00000264059	ENST00000503879		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409708	ENST00000265165		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409708	ENST00000379951		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409708	ENST00000438313		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409708	ENST00000510624		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000409708	ENST00000512172		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-intron	ENST00000409708	ENST00000503879		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000410095	ENST00000265165		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000410095	ENST00000379951		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000410095	ENST00000438313		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000410095	ENST00000510624		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-3CDS	ENST00000410095	ENST00000512172		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
intron-intron	ENST00000410095	ENST00000503879		ChiTaRS3.1			BE144130	EFHD1	chr2	233503439	+	LEF1	chr4	109084733	+
5CDS-intron	ENST00000238379	ENST00000482253		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000238379	ENST00000609116		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000238379	ENST00000370197		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000238379	ENST00000370198		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000238379	ENST00000426398		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000238379	ENST00000394184		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000238379	ENST00000541987		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000482253		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000609116		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000370197		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000370198		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000426398		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000394184		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
5CDS-intron	ENST00000374180	ENST00000541987		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000482253		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000609116		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000370197		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000370198		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000426398		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000394184		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
intron-intron	ENST00000485934	ENST00000541987		ChiTaRS3.1			BM725050	HDHD3	chr9	116135702	-	PTBP2	chr1	97200043	-
3UTR-3CDS	ENST00000325083	ENST00000325083		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000325083	ENST00000519253		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000325083	ENST00000524226		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000325083	ENST00000518537		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000325083	ENST00000518936		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000325083	ENST00000327578		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000519253	ENST00000325083		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000519253	ENST00000519253		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000519253	ENST00000524226		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000519253	ENST00000518537		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000519253	ENST00000518936		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000519253	ENST00000327578		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000524226	ENST00000325083		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000524226	ENST00000519253		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-3CDS	ENST00000524226	ENST00000524226		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000524226	ENST00000518537		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000524226	ENST00000518936		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
3UTR-intron	ENST00000524226	ENST00000327578		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-3CDS	ENST00000518537	ENST00000325083		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-3CDS	ENST00000518537	ENST00000519253		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-3CDS	ENST00000518537	ENST00000524226		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000518537	ENST00000518537		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000518537	ENST00000518936		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000518537	ENST00000327578		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-3CDS	ENST00000518936	ENST00000325083		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-3CDS	ENST00000518936	ENST00000519253		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-3CDS	ENST00000518936	ENST00000524226		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000518936	ENST00000518537		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000518936	ENST00000518936		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000518936	ENST00000327578		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
Frame-shit	ENST00000327578	ENST00000325083		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
Frame-shit	ENST00000327578	ENST00000519253		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
Frame-shit	ENST00000327578	ENST00000524226		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
5CDS-intron	ENST00000327578	ENST00000518537		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
5CDS-intron	ENST00000327578	ENST00000518936		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
5CDS-intron	ENST00000327578	ENST00000327578		ChiTaRS3.1			CD240310	PCM1	chr8	17885252	+	PCM1	chr8	17883089	-
intron-intron	ENST00000366943	ENST00000487694		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366943	ENST00000461745		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366943	ENST00000332191		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366943	ENST00000469233		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000307340	ENST00000487694		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000307340	ENST00000461745		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000307340	ENST00000332191		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000307340	ENST00000469233		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366942	ENST00000487694		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366942	ENST00000461745		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366942	ENST00000332191		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000366942	ENST00000469233		ChiTaRS3.1			N39450	USH2A	chr1	216230391	+	ROBO2	chr3	76442536	+
intron-intron	ENST00000587515	ENST00000346169		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000414031		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000392537		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000382330		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000350481		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000352767		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000427845		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000342981		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000319274		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000424196		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000411531		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000441154		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000434061		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000587515	ENST00000435046		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000346169		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000414031		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000392537		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000382330		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000350481		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000352767		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000427845		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000342981		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000319274		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000424196		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000411531		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000441154		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000434061		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591291	ENST00000435046		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000346169		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000414031		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000392537		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000382330		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000350481		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000352767		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000427845		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000342981		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000319274		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000424196		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000411531		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000441154		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000434061		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000347262	ENST00000435046		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000346169		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000414031		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000392537		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000382330		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000350481		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000352767		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000427845		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000342981		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000319274		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000424196		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000411531		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000441154		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000434061		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000301242	ENST00000435046		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000346169		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000414031		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000392537		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000382330		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000350481		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000352767		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000427845		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000342981		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000319274		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000424196		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000411531		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000441154		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000434061		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000591585	ENST00000435046		ChiTaRS3.1			AI744700	PPP1R14A	chr19	38742046	+	EIF4G1	chr3	184049153	-
intron-intron	ENST00000369940	ENST00000369940		ChiTaRS3.1			BG574510	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-intron	ENST00000369940	ENST00000607739		ChiTaRS3.1			BG574510	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-intron	ENST00000607739	ENST00000369940		ChiTaRS3.1			BG574510	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-intron	ENST00000607739	ENST00000607739		ChiTaRS3.1			BG574510	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
5CDS-5UTR	ENST00000297268	ENST00000215909		ChiTaRS3.1			AI752600	COL1A2	chr7	94057716	-	LGALS1	chr22	38071655	+
5CDS-intron	ENST00000297268	ENST00000489315		ChiTaRS3.1			AI752600	COL1A2	chr7	94057716	-	LGALS1	chr22	38071655	+
intron-5UTR	ENST00000367033	ENST00000374358		ChiTaRS3.1			AK074960	PLXNA2	chr1	208315772	-	TMEM50A	chr1	25664808	+
intron-5UTR	ENST00000367033	ENST00000480937		ChiTaRS3.1			AK074960	PLXNA2	chr1	208315772	-	TMEM50A	chr1	25664808	+
intron-5UTR	ENST00000483048	ENST00000374358		ChiTaRS3.1			AK074960	PLXNA2	chr1	208315772	-	TMEM50A	chr1	25664808	+
intron-5UTR	ENST00000483048	ENST00000480937		ChiTaRS3.1			AK074960	PLXNA2	chr1	208315772	-	TMEM50A	chr1	25664808	+
intron-3UTR	ENST00000336431	ENST00000262367		ChiTaRS3.1			H19810	GGT7	chr20	33433152	-	CREBBP	chr16	3776978	+
intron-intron	ENST00000336431	ENST00000382070		ChiTaRS3.1			H19810	GGT7	chr20	33433152	-	CREBBP	chr16	3776978	+
intron-3UTR	ENST00000469018	ENST00000262367		ChiTaRS3.1			H19810	GGT7	chr20	33433152	-	CREBBP	chr16	3776978	+
intron-intron	ENST00000469018	ENST00000382070		ChiTaRS3.1			H19810	GGT7	chr20	33433152	-	CREBBP	chr16	3776978	+
intron-intron	ENST00000374675	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000374675	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000374675	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000374675	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374675	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000374677	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000374677	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000374677	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000374677	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000463972	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000463972	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000463972	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000463972	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000423043	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000423043	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000423043	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000423043	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000418477	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000418477	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000418477	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000418477	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000486338	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000486338	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000486338	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000486338	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000416369	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000416369	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000416369	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000416369	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000441854	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000441854	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000441854	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441854	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000477713	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000477713	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000477713	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000477713	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000441953	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000441953	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000441953	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000441953	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000431735	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000431735	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000431735	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000431735	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000462670	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000462670	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000462670	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000462670	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000383214	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000383214	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000383214	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383214	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000383213	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000383213	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000383213	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000383213	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000486373	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000486373	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-3UTR	ENST00000486373	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
3UTR-intron	ENST00000486373	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000443773	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000443773	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000443773	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000443773	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000456261	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000456261	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000456261	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000456261	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000374675		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000374677		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000463972		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000423043		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000418477		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000486338		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000416369		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000441854		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000477713		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000441953		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000431735		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000462670		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000487655	ENST00000383214		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000487655	ENST00000383213		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3UTR	ENST00000487655	ENST00000486373		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000443773		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000456261		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-intron	ENST00000487655	ENST00000487655		ChiTaRS3.1			BF373590	SLC39A7	chr6	4403974	-	SLC39A7	chr6	4403918	+
intron-3CDS	ENST00000317551	ENST00000317551		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-3CDS	ENST00000317551	ENST00000422340		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-intron	ENST00000317551	ENST00000547852		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-3CDS	ENST00000422340	ENST00000317551		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-3CDS	ENST00000422340	ENST00000422340		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-intron	ENST00000422340	ENST00000547852		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-3CDS	ENST00000547852	ENST00000317551		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-3CDS	ENST00000547852	ENST00000422340		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-intron	ENST00000547852	ENST00000547852		ChiTaRS3.1			BI014120	CERS5	chr12	50524302	+	CERS5	chr12	50524409	-
intron-intron	ENST00000446041	ENST00000446041		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000446041	ENST00000393015		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000446041	ENST00000507429		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000446041	ENST00000324194		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000446041	ENST00000453248		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000393015	ENST00000446041		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000393015	ENST00000393015		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000393015	ENST00000507429		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000393015	ENST00000324194		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000393015	ENST00000453248		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000507429	ENST00000446041		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000507429	ENST00000393015		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000507429	ENST00000507429		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000507429	ENST00000324194		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000507429	ENST00000453248		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000324194	ENST00000446041		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000324194	ENST00000393015		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000324194	ENST00000507429		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000324194	ENST00000324194		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000324194	ENST00000453248		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000453248	ENST00000446041		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000453248	ENST00000393015		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000453248	ENST00000507429		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000453248	ENST00000324194		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000453248	ENST00000453248		ChiTaRS3.1			BY798500	SLC25A36	chr3	140670101	-	SLC25A36	chr3	140670145	+
intron-intron	ENST00000284637	ENST00000284637		ChiTaRS3.1			BE063510	SH3RF1	chr4	170125966	-	SH3RF1	chr4	170162143	-
intron-intron	ENST00000284637	ENST00000508685		ChiTaRS3.1			BE063510	SH3RF1	chr4	170125966	-	SH3RF1	chr4	170162143	-
intron-intron	ENST00000508685	ENST00000284637		ChiTaRS3.1			BE063510	SH3RF1	chr4	170125966	-	SH3RF1	chr4	170162143	-
intron-intron	ENST00000508685	ENST00000508685		ChiTaRS3.1			BE063510	SH3RF1	chr4	170125966	-	SH3RF1	chr4	170162143	-
intron-intron	ENST00000369911	ENST00000221455		ChiTaRS3.1			BE067370	DNAJC5	chr20	62540998	-	CLASRP	chr19	45554411	+
intron-intron	ENST00000369911	ENST00000391953		ChiTaRS3.1			BE067370	DNAJC5	chr20	62540998	-	CLASRP	chr19	45554411	+
intron-intron	ENST00000369911	ENST00000544944		ChiTaRS3.1			BE067370	DNAJC5	chr20	62540998	-	CLASRP	chr19	45554411	+
intron-intron	ENST00000360864	ENST00000221455		ChiTaRS3.1			BE067370	DNAJC5	chr20	62540998	-	CLASRP	chr19	45554411	+
intron-intron	ENST00000360864	ENST00000391953		ChiTaRS3.1			BE067370	DNAJC5	chr20	62540998	-	CLASRP	chr19	45554411	+
intron-intron	ENST00000360864	ENST00000544944		ChiTaRS3.1			BE067370	DNAJC5	chr20	62540998	-	CLASRP	chr19	45554411	+
intron-3CDS	ENST00000256682	ENST00000397389		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000256682	ENST00000538755		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000256682	ENST00000536150		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000256682	ENST00000538628		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000256682	ENST00000545612		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000256682	ENST00000542117		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000256682	ENST00000545317		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000256682	ENST00000454694		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000256682	ENST00000228922		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000447318	ENST00000397389		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000447318	ENST00000538755		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000447318	ENST00000536150		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000447318	ENST00000538628		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000447318	ENST00000545612		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000447318	ENST00000542117		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000447318	ENST00000545317		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000447318	ENST00000454694		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000447318	ENST00000228922		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541959	ENST00000397389		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541959	ENST00000538755		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541959	ENST00000536150		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541959	ENST00000538628		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541959	ENST00000545612		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541959	ENST00000542117		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541959	ENST00000545317		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541959	ENST00000454694		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541959	ENST00000228922		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541967	ENST00000397389		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541967	ENST00000538755		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541967	ENST00000536150		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541967	ENST00000538628		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3CDS	ENST00000541967	ENST00000545612		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541967	ENST00000542117		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541967	ENST00000545317		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541967	ENST00000454694		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-3UTR	ENST00000541967	ENST00000228922		ChiTaRS3.1			R23430	ARF3	chr12	49332574	-	OGFOD2	chr12	123463093	-
intron-intron	ENST00000228506	ENST00000330909		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000228506	ENST00000402939		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000228506	ENST00000483466		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000228506	ENST00000497477		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000228506	ENST00000470990		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000412616	ENST00000330909		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000412616	ENST00000402939		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000412616	ENST00000483466		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000412616	ENST00000497477		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000412616	ENST00000470990		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000535413	ENST00000330909		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000535413	ENST00000402939		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000535413	ENST00000483466		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000535413	ENST00000497477		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000535413	ENST00000470990		ChiTaRS3.1			BF806090	MLEC	chr12	121125681	-	MAGI1	chr3	65720244	+
intron-intron	ENST00000377989	ENST00000377989		ChiTaRS3.1			AW275670	CMAHP	chr6	25125217	-	CMAHP	chr6	25125106	+
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			BF000870	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-intron	ENST00000383737	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000383737	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000395734	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000426837	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000360240	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000439356	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000264724	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000420772	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000441748	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000462206	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000383737		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000395734		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000426837		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000360240		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000439356		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000264724		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000420772		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000441748		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000462206		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-intron	ENST00000434267	ENST00000434267		ChiTaRS3.1			AI378470	MAP4	chr3	47958227	+	MAP4	chr3	47958057	-
intron-3CDS	ENST00000435667	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000435667		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000440156		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000455077		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000437179		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000388777		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000454389		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000446700		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000425128		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000445684		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000428386		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000295736		ChiTaRS3.1			AB012130	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
3UTR-3CDS	ENST00000287934	ENST00000287934		ChiTaRS3.1			W01830	FZD1	chr7	90896865	+	FZD1	chr7	90895977	+
intron-intron	ENST00000573308	ENST00000573308		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573308	ENST00000573950		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573308	ENST00000570786		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573308	ENST00000598538		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573950	ENST00000573308		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573950	ENST00000573950		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573950	ENST00000570786		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000573950	ENST00000598538		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000570786	ENST00000573308		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000570786	ENST00000573950		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000570786	ENST00000570786		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000570786	ENST00000598538		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000598538	ENST00000573308		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000598538	ENST00000573950		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000598538	ENST00000570786		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000598538	ENST00000598538		ChiTaRS3.1			CV343980	TAPT1-AS1	chr4	16231128	-	TAPT1-AS1	chr4	16231250	+
intron-intron	ENST00000276185	ENST00000330165		ChiTaRS3.1			AI962310	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000276185	ENST00000369307		ChiTaRS3.1			AI962310	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000477796	ENST00000330165		ChiTaRS3.1			AI962310	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000477796	ENST00000369307		ChiTaRS3.1			AI962310	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
In-frame	ENST00000398806	ENST00000398806		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000398806	ENST00000542787		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000398806	ENST00000338623		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000398806	ENST00000381163		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
5CDS-3UTR	ENST00000398806	ENST00000381161		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000542787	ENST00000398806		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000542787	ENST00000542787		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000542787	ENST00000338623		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000542787	ENST00000381163		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
5CDS-3UTR	ENST00000542787	ENST00000381161		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000338623	ENST00000398806		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000338623	ENST00000542787		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000338623	ENST00000338623		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000338623	ENST00000381163		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
5CDS-3UTR	ENST00000338623	ENST00000381161		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000381163	ENST00000398806		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000381163	ENST00000542787		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000381163	ENST00000338623		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
In-frame	ENST00000381163	ENST00000381163		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
5CDS-3UTR	ENST00000381163	ENST00000381161		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
intron-3CDS	ENST00000381161	ENST00000398806		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
intron-3CDS	ENST00000381161	ENST00000542787		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
intron-3CDS	ENST00000381161	ENST00000338623		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
intron-3CDS	ENST00000381161	ENST00000381163		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
intron-3UTR	ENST00000381161	ENST00000381161		ChiTaRS3.1			BF309900	GYG2	chrX	2761351	-	GYG2	chrX	2772129	+
5UTR-intron	ENST00000343933	ENST00000287996		ChiTaRS3.1			CF595670	CORO2A	chr9	100934909	-	IPPK	chr9	95398014	+
5UTR-intron	ENST00000343933	ENST00000486841		ChiTaRS3.1			CF595670	CORO2A	chr9	100934909	-	IPPK	chr9	95398014	+
5UTR-intron	ENST00000343933	ENST00000375522		ChiTaRS3.1			CF595670	CORO2A	chr9	100934909	-	IPPK	chr9	95398014	+
intron-intron	ENST00000375077	ENST00000287996		ChiTaRS3.1			CF595670	CORO2A	chr9	100934909	-	IPPK	chr9	95398014	+
intron-intron	ENST00000375077	ENST00000486841		ChiTaRS3.1			CF595670	CORO2A	chr9	100934909	-	IPPK	chr9	95398014	+
intron-intron	ENST00000375077	ENST00000375522		ChiTaRS3.1			CF595670	CORO2A	chr9	100934909	-	IPPK	chr9	95398014	+
intron-3CDS	ENST00000524189	ENST00000394196		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000524189	ENST00000557381		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000524189	ENST00000420239		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000524189	ENST00000536619		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-intron	ENST00000524189	ENST00000554122		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000521515	ENST00000394196		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000521515	ENST00000557381		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000521515	ENST00000420239		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000521515	ENST00000536619		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-intron	ENST00000521515	ENST00000554122		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000404075	ENST00000394196		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000404075	ENST00000557381		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000404075	ENST00000420239		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-3CDS	ENST00000404075	ENST00000536619		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
intron-intron	ENST00000404075	ENST00000554122		ChiTaRS3.1			AI904060	KIF13B	chr8	29087608	+	CHD2	chr15	93480812	-
3UTR-3CDS	ENST00000229922	ENST00000373602		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
3UTR-3UTR	ENST00000229922	ENST00000421922		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
3UTR-intron	ENST00000229922	ENST00000483009		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-3CDS	ENST00000489374	ENST00000373602		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-3UTR	ENST00000489374	ENST00000421922		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-intron	ENST00000489374	ENST00000483009		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
In-frame	ENST00000378990	ENST00000373602		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
5CDS-3UTR	ENST00000378990	ENST00000421922		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
5CDS-intron	ENST00000378990	ENST00000483009		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-3CDS	ENST00000493172	ENST00000373602		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-3UTR	ENST00000493172	ENST00000421922		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-intron	ENST00000493172	ENST00000483009		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-3CDS	ENST00000465994	ENST00000373602		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-3UTR	ENST00000465994	ENST00000421922		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
intron-intron	ENST00000465994	ENST00000483009		ChiTaRS3.1			F32490	CAP2	chr6	17557021	-	CCDC28B	chr1	32670811	+
5CDS-5UTR	ENST00000418917	ENST00000338488		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000418917	ENST00000395097		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000418917	ENST00000330847		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000490574	ENST00000338488		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000490574	ENST00000395097		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000490574	ENST00000330847		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000240851	ENST00000338488		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000240851	ENST00000395097		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000240851	ENST00000330847		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000476228	ENST00000338488		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000476228	ENST00000395097		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
5CDS-5UTR	ENST00000476228	ENST00000330847		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
3UTR-5UTR	ENST00000481203	ENST00000338488		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
3UTR-5UTR	ENST00000481203	ENST00000395097		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
3UTR-5UTR	ENST00000481203	ENST00000330847		ChiTaRS3.1			AY532911	TFG	chr3	100463775	+	NR4A3	chr9	102590320	+
intron-5UTR	ENST00000297904	ENST00000297904		ChiTaRS3.1			CB218800	FIGF	chrX	15363941	+	FIGF	chrX	15402103	-
intron-intron	ENST00000297904	ENST00000488351		ChiTaRS3.1			CB218800	FIGF	chrX	15363941	+	FIGF	chrX	15402103	-
intron-5UTR	ENST00000488351	ENST00000297904		ChiTaRS3.1			CB218800	FIGF	chrX	15363941	+	FIGF	chrX	15402103	-
intron-intron	ENST00000488351	ENST00000488351		ChiTaRS3.1			CB218800	FIGF	chrX	15363941	+	FIGF	chrX	15402103	-
intron-intron	ENST00000369617	ENST00000369617		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369617	ENST00000307546		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369617	ENST00000369615		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369617	ENST00000369611		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369617	ENST00000486456		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000307546	ENST00000369617		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000307546	ENST00000307546		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000307546	ENST00000369615		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000307546	ENST00000369611		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000307546	ENST00000486456		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369615	ENST00000369617		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369615	ENST00000307546		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369615	ENST00000369615		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369615	ENST00000369611		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369615	ENST00000486456		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369611	ENST00000369617		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369611	ENST00000307546		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369611	ENST00000369615		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369611	ENST00000369611		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000369611	ENST00000486456		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000486456	ENST00000369617		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000486456	ENST00000307546		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000486456	ENST00000369615		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000486456	ENST00000369611		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000486456	ENST00000486456		ChiTaRS3.1			AK021970	MAGI3	chr1	114088935	+	MAGI3	chr1	114085640	+
intron-intron	ENST00000265044	ENST00000545844		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000567887		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000372915		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000361689		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000539005		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000317713		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000564288		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000289893		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000536367		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000484793		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000602421		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000265044	ENST00000476350		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000545844		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000567887		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000372915		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000361689		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000539005		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000317713		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000564288		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000289893		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000536367		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000484793		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000602421		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000467789	ENST00000476350		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000545844		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000567887		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000372915		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000361689		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000539005		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000317713		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000564288		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000289893		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000536367		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000484793		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000602421		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000476217	ENST00000476350		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000545844		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000567887		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000372915		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000361689		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000539005		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000317713		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000564288		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000289893		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000536367		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000484793		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000602421		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000478842	ENST00000476350		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000545844		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000567887		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000372915		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000361689		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000539005		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000317713		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000564288		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000289893		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000536367		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000484793		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000602421		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000463503	ENST00000476350		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000545844		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000567887		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000372915		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000361689		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000539005		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000317713		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000564288		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000289893		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000536367		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000484793		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000602421		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-intron	ENST00000496050	ENST00000476350		ChiTaRS3.1			AW168600	SSR3	chr3	156258040	+	MACF1	chr1	39881517	-
intron-3UTR	ENST00000545844	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000545844	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000545844	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000545844	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000567887	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000567887	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000567887	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000567887	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000372915	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000372915	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000372915	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000372915	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000361689	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000361689	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000361689	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000361689	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000539005	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000539005	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000539005	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000539005	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000317713	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000317713	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000317713	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000317713	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000564288	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000564288	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000564288	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000564288	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000289893	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000289893	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000289893	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000289893	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000536367	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000536367	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000536367	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000536367	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000484793	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000484793	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000484793	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000484793	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000602421	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000602421	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000602421	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000602421	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000476350	ENST00000553780		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000476350	ENST00000554866		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000476350	ENST00000329597		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
intron-3UTR	ENST00000476350	ENST00000554276		ChiTaRS3.1			AA689550	MACF1	chr1	39844268	+	SERPINA5	chr14	95058645	+
5CDS-intron	ENST00000379802	ENST00000554335		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000251091		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000555112		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000392067		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000357634		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000555192		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000554335		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000251091		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000555112		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000392067		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000357634		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000555192		ChiTaRS3.1			BE939920	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
intron-3CDS	ENST00000223127	ENST00000223127		ChiTaRS3.1			CF125710	PLOD3	chr7	100856225	+	PLOD3	chr7	100856159	-
3UTR-3UTR	ENST00000378847	ENST00000378847		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
3UTR-intron	ENST00000378847	ENST00000487696		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
3UTR-intron	ENST00000378847	ENST00000378845		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-3UTR	ENST00000487696	ENST00000378847		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-intron	ENST00000487696	ENST00000487696		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-intron	ENST00000487696	ENST00000378845		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-3UTR	ENST00000378845	ENST00000378847		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-intron	ENST00000378845	ENST00000487696		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-intron	ENST00000378845	ENST00000378845		ChiTaRS3.1			BU153500	CAMK1D	chr10	12875946	-	CAMK1D	chr10	12876003	+
intron-3UTR	ENST00000376322	ENST00000465150		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
intron-3UTR	ENST00000376322	ENST00000376582		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
intron-3UTR	ENST00000376322	ENST00000396779		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
intron-3UTR	ENST00000376322	ENST00000495490		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
intron-intron	ENST00000376322	ENST00000472645		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
3UTR-3UTR	ENST00000376327	ENST00000465150		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
3UTR-3UTR	ENST00000376327	ENST00000376582		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
3UTR-3UTR	ENST00000376327	ENST00000396779		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
3UTR-3UTR	ENST00000376327	ENST00000495490		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
3UTR-intron	ENST00000376327	ENST00000472645		ChiTaRS3.1			BE716540	PLP2	chrX	49031351	+	TIMM17B	chrX	48750842	-
intron-3UTR	ENST00000303391	ENST00000307641		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000393885		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000303391	ENST00000393884		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000479407		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000393881		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000393880		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000462043		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000449471		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000303391	ENST00000316082		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000453960	ENST00000307641		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000393885		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000453960	ENST00000393884		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000479407		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000393881		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000393880		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000462043		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000449471		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000453960	ENST00000316082		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000407218	ENST00000307641		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000393885		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000407218	ENST00000393884		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000479407		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000393881		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000393880		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000462043		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000449471		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000407218	ENST00000316082		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000460227	ENST00000307641		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000393885		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-3UTR	ENST00000460227	ENST00000393884		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000479407		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000393881		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000393880		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000462043		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000449471		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000460227	ENST00000316082		ChiTaRS3.1			BE350810	MECP2	chrX	153287548	+	NKIRAS2	chr17	40177378	-
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425238	BCR	chr22	23634575	+	ABL1	chr9	133607565	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425238	BCR	chr22	23634575	+	ABL1	chr9	133607565	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425238	BCR	chr22	23634575	+	ABL1	chr9	133607565	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425238	BCR	chr22	23634575	+	ABL1	chr9	133607565	+
intron-intron	ENST00000280551	ENST00000368533		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000469717		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000330188		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000341485		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000341372		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000328159		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000271850		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000302206		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000368531		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000323144		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000368530		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368533		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000469717		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000330188		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000341485		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000341372		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000328159		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000271850		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000302206		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368531		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000323144		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368530		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368533		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000469717		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000330188		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000341485		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000341372		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000328159		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000271850		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000302206		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368531		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000323144		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368530		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368533		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000469717		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000330188		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000341485		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000341372		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000328159		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000271850		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000302206		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368531		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000323144		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368530		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368533		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000469717		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000330188		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000341485		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000341372		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000328159		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000271850		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000302206		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368531		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000323144		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368530		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368533		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000469717		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000330188		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000341485		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000341372		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000328159		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000271850		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000302206		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368531		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000323144		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368530		ChiTaRS3.1			BE695910	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-3CDS	ENST00000413953	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000413953	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000413953	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000413953	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000413953	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000413953	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000413953	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000347140	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000347140	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000347140	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000347140	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000347140	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000347140	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000347140	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000358907	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000358907	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000358907	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000358907	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000358907	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000358907	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000358907	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000402412	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000402412	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000402412	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000402412	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000402412	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000402412	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000402412	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000441731	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000441731	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000441731	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000441731	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000441731	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000441731	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000441731	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000403821	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000403821	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000403821	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000403821	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000403821	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000403821	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000403821	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000546843	ENST00000413953		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000546843	ENST00000347140		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000546843	ENST00000358907		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000546843	ENST00000402412		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000546843	ENST00000441731		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-3CDS	ENST00000546843	ENST00000403821		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-5UTR	ENST00000546843	ENST00000546843		ChiTaRS3.1			BF955330	R3HDM2	chr12	57648529	-	R3HDM2	chr12	57651895	-
intron-intron	ENST00000405508	ENST00000402285		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000405508	ENST00000272317		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000405508	ENST00000404735		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000262709	ENST00000402285		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000262709	ENST00000272317		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000262709	ENST00000404735		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000448790	ENST00000402285		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000448790	ENST00000272317		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000448790	ENST00000404735		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000494242	ENST00000402285		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000494242	ENST00000272317		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000494242	ENST00000404735		ChiTaRS3.1			DA583490	TOX4	chr14	21946363	-	RPS27A	chr2	55460973	+
intron-intron	ENST00000302787	ENST00000543086		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000546231		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000397203		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000360905		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000589028		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000355446		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000536573		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000543086		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000546231		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000397203		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000360905		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000589028		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000355446		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000536573		ChiTaRS3.1			BG957200	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-3CDS	ENST00000447998	ENST00000447998		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000447998	ENST00000424236		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000447998	ENST00000446090		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-intron	ENST00000447998	ENST00000521093		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000424236	ENST00000447998		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000424236	ENST00000424236		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000424236	ENST00000446090		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-intron	ENST00000424236	ENST00000521093		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000446090	ENST00000447998		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000446090	ENST00000424236		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000446090	ENST00000446090		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-intron	ENST00000446090	ENST00000521093		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000521093	ENST00000447998		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000521093	ENST00000424236		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000521093	ENST00000446090		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-intron	ENST00000521093	ENST00000521093		ChiTaRS3.1			BF846890	DCTN4	chr5	150110695	-	DCTN4	chr5	150110214	+
intron-3CDS	ENST00000283351	ENST00000283351		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000283351	ENST00000582539		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000283351	ENST00000582513		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000283351	ENST00000584876		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000582539	ENST00000283351		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000582539	ENST00000582539		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000582539	ENST00000582513		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000582539	ENST00000584876		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000582513	ENST00000283351		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000582513	ENST00000582539		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000582513	ENST00000582513		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000582513	ENST00000584876		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000584876	ENST00000283351		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3CDS	ENST00000584876	ENST00000582539		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000584876	ENST00000582513		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-intron	ENST00000584876	ENST00000584876		ChiTaRS3.1			D82760	TRAPPC8	chr18	29410944	+	TRAPPC8	chr18	29410779	-
intron-3UTR	ENST00000358506	ENST00000267425		ChiTaRS3.1			BE705920	PPP1CB	chr2	28975914	-	NOP9	chr14	24774631	-
intron-intron	ENST00000358506	ENST00000396802		ChiTaRS3.1			BE705920	PPP1CB	chr2	28975914	-	NOP9	chr14	24774631	-
intron-3UTR	ENST00000296122	ENST00000267425		ChiTaRS3.1			BE705920	PPP1CB	chr2	28975914	-	NOP9	chr14	24774631	-
intron-intron	ENST00000296122	ENST00000396802		ChiTaRS3.1			BE705920	PPP1CB	chr2	28975914	-	NOP9	chr14	24774631	-
intron-3UTR	ENST00000395366	ENST00000267425		ChiTaRS3.1			BE705920	PPP1CB	chr2	28975914	-	NOP9	chr14	24774631	-
intron-intron	ENST00000395366	ENST00000396802		ChiTaRS3.1			BE705920	PPP1CB	chr2	28975914	-	NOP9	chr14	24774631	-
intron-intron	ENST00000360001	ENST00000464615		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000360001	ENST00000265758		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000360001	ENST00000423166		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000360001	ENST00000423497		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000263741	ENST00000464615		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000263741	ENST00000265758		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000263741	ENST00000423166		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000263741	ENST00000423497		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000545427	ENST00000464615		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000545427	ENST00000265758		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000545427	ENST00000423166		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000545427	ENST00000423497		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000459994	ENST00000464615		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000459994	ENST00000265758		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-5UTR	ENST00000459994	ENST00000423166		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-intron	ENST00000459994	ENST00000423497		ChiTaRS3.1			BF312340	SDF4	chr1	1167358	+	WBSCR22	chr7	73097940	+
intron-3UTR	ENST00000324771	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000418800	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000454612	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000376569	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000446312	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000376575	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000376570	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000376568	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000452441	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000508312	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000376567	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000513240	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000508472	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000361741	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000434428	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000483193	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000383377	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000400414	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000259875	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000552721	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000553015	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000468225	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000400411	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000400410	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
5CDS-3UTR	ENST00000412329	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
5CDS-3UTR	ENST00000449518	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
5CDS-3UTR	ENST00000427053	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000548962	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
5CDS-3UTR	ENST00000548133	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000462241	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
5CDS-3UTR	ENST00000415092	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
5CDS-3UTR	ENST00000453510	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000550666	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000488414	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000422628	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000400492	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000400491	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000400489	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000549026	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000550395	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000490712	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000400488	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000400486	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000552434	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000430933	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000429699	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000421229	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000550384	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000552068	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000487780	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000454774	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000419412	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
intron-3UTR	ENST00000548693	ENST00000300086		ChiTaRS3.1			BU676550	DDR1	chr6	2160800	-	TERF2IP	chr16	75691083	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW977290	MALAT1	chr11	65267278	-	MALAT1	chr11	65267672	-
intron-3CDS	ENST00000357640	ENST00000357640		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-3CDS	ENST00000357640	ENST00000369752		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-5UTR	ENST00000357640	ENST00000473682		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-3CDS	ENST00000369752	ENST00000357640		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-3CDS	ENST00000369752	ENST00000369752		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-5UTR	ENST00000369752	ENST00000473682		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-3CDS	ENST00000473682	ENST00000357640		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-3CDS	ENST00000473682	ENST00000369752		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-5UTR	ENST00000473682	ENST00000473682		ChiTaRS3.1			BG387960	DENND2D	chr1	111742415	+	DENND2D	chr1	111742365	-
intron-intron	ENST00000304685	ENST00000394609		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000405240		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000357376		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000317610		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000357732		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000337526		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000394611		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000404909		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000486085		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000354474		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000304685	ENST00000402434		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000394609		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000405240		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000357376		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000317610		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000357732		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000337526		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000394611		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000404909		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000486085		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000354474		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000536277	ENST00000402434		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000394609		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000405240		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000357376		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000317610		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000357732		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000337526		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000394611		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000404909		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000486085		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000354474		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000360851	ENST00000402434		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000394609		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000405240		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000357376		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000317610		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000357732		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000337526		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000394611		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000404909		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000486085		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000354474		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-intron	ENST00000539189	ENST00000402434		ChiTaRS3.1			T07660	RGL1	chr1	183618078	-	RTN4	chr2	55205157	-
intron-5UTR	ENST00000395957	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395957	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000395957	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395958	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395958	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000395958	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000457309	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000457309	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000457309	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395956	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395956	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000395956	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
5UTR-5UTR	ENST00000353245	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
5UTR-5UTR	ENST00000353245	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
5UTR-intron	ENST00000353245	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000522542	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000522542	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000522542	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000521309	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000521309	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000521309	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000522819	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000522819	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000522819	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395953	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395953	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000395953	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395948	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395948	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000395948	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395951	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000395951	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000395951	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000419477	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-5UTR	ENST00000419477	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-intron	ENST00000419477	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
5UTR-5UTR	ENST00000492736	ENST00000337198		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
5UTR-5UTR	ENST00000492736	ENST00000347770		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
5UTR-intron	ENST00000492736	ENST00000522311		ChiTaRS3.1			DB135580	YWHAZ	chr8	101965496	-	AZIN1	chr8	103870380	-
intron-3CDS	ENST00000261497	ENST00000455600		ChiTaRS3.1			BF821260	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-intron	ENST00000261497	ENST00000468041		ChiTaRS3.1			BF821260	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-3CDS	ENST00000537526	ENST00000455600		ChiTaRS3.1			BF821260	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-intron	ENST00000537526	ENST00000468041		ChiTaRS3.1			BF821260	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-3CDS	ENST00000455117	ENST00000455600		ChiTaRS3.1			BF821260	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-intron	ENST00000455117	ENST00000468041		ChiTaRS3.1			BF821260	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
Frame-shit	ENST00000330634	ENST00000558530		ChiTaRS3.1			BF846740	INF2	chr14	105177460	-	TGIF2-C20orf24	chr20	35238039	+
intron-3CDS	ENST00000398337	ENST00000558530		ChiTaRS3.1			BF846740	INF2	chr14	105177460	-	TGIF2-C20orf24	chr20	35238039	+
Frame-shit	ENST00000392634	ENST00000558530		ChiTaRS3.1			BF846740	INF2	chr14	105177460	-	TGIF2-C20orf24	chr20	35238039	+
intron-3CDS	ENST00000481338	ENST00000558530		ChiTaRS3.1			BF846740	INF2	chr14	105177460	-	TGIF2-C20orf24	chr20	35238039	+
intron-intron	ENST00000543117	ENST00000330263		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000543117	ENST00000493700		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000265393	ENST00000330263		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000265393	ENST00000493700		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000409980	ENST00000330263		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000409980	ENST00000493700		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000433216	ENST00000330263		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000433216	ENST00000493700		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000396319	ENST00000330263		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000396319	ENST00000493700		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000494033	ENST00000330263		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000494033	ENST00000493700		ChiTaRS3.1			BG929350	TAX1BP1	chr7	27809628	+	MRTO4	chr1	19579768	-
intron-intron	ENST00000598205	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000598205	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000598205	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000598205	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000598205	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000598205	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-intron	ENST00000598205	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000376970	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000376970	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000376970	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000376970	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000376970	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000376970	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000376970	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000425460	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000425460	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000425460	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000425460	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000425460	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000425460	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000425460	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000440075	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000440075	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000440075	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000440075	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000440075	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000440075	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000440075	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000601313	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000601313	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000601313	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000601313	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000601313	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000601313	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000601313	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000262269	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000262269	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000262269	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000262269	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000262269	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-3UTR	ENST00000262269	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000262269	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-intron	ENST00000596571	ENST00000598205		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000596571	ENST00000376970		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000596571	ENST00000425460		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000596571	ENST00000440075		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000596571	ENST00000601313		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-3UTR	ENST00000596571	ENST00000262269		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
intron-intron	ENST00000596571	ENST00000596571		ChiTaRS3.1			BI060470	MYH14	chr19	50813509	+	MYH14	chr19	50813175	+
3UTR-intron	ENST00000483099	ENST00000426838		ChiTaRS3.1			DA778780	SNRPE	chr1	203831187	+	SETBP1	chr18	42532622	+
3UTR-intron	ENST00000483099	ENST00000282030		ChiTaRS3.1			DA778780	SNRPE	chr1	203831187	+	SETBP1	chr18	42532622	+
intron-intron	ENST00000414487	ENST00000426838		ChiTaRS3.1			DA778780	SNRPE	chr1	203831187	+	SETBP1	chr18	42532622	+
intron-intron	ENST00000414487	ENST00000282030		ChiTaRS3.1			DA778780	SNRPE	chr1	203831187	+	SETBP1	chr18	42532622	+
intron-intron	ENST00000367208	ENST00000426838		ChiTaRS3.1			DA778780	SNRPE	chr1	203831187	+	SETBP1	chr18	42532622	+
intron-intron	ENST00000367208	ENST00000282030		ChiTaRS3.1			DA778780	SNRPE	chr1	203831187	+	SETBP1	chr18	42532622	+
intron-3UTR	ENST00000377658	ENST00000377658		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000377658	ENST00000377663		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000377658	ENST00000467612		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000377658	ENST00000463043		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000377663	ENST00000377658		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000377663	ENST00000377663		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000377663	ENST00000467612		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000377663	ENST00000463043		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000467612	ENST00000377658		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000467612	ENST00000377663		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000467612	ENST00000467612		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000467612	ENST00000463043		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000463043	ENST00000377658		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-3UTR	ENST00000463043	ENST00000377663		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000463043	ENST00000467612		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
intron-intron	ENST00000463043	ENST00000463043		ChiTaRS3.1			AW875570	KLHL21	chr1	6654652	+	KLHL21	chr1	6652159	-
3UTR-intron	ENST00000479054	ENST00000336868		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000479054	ENST00000577098		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000479054	ENST00000575801		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000479054	ENST00000538650		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000479054	ENST00000537628		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000345716	ENST00000336868		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000345716	ENST00000577098		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000345716	ENST00000575801		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000345716	ENST00000538650		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-intron	ENST00000345716	ENST00000537628		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000488380	ENST00000336868		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000488380	ENST00000577098		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000488380	ENST00000575801		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000488380	ENST00000538650		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000488380	ENST00000537628		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000420808	ENST00000336868		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000420808	ENST00000577098		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000420808	ENST00000575801		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000420808	ENST00000538650		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000420808	ENST00000537628		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000464280	ENST00000336868		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000464280	ENST00000577098		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000464280	ENST00000575801		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000464280	ENST00000538650		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
intron-intron	ENST00000464280	ENST00000537628		ChiTaRS3.1			CB049610	NISCH	chr3	52526890	-	NXN	chr17	824835	+
3UTR-3CDS	ENST00000462445	ENST00000462445		ChiTaRS3.1			BP217490	SRGN	chr10	70864133	+	SRGN	chr10	70847859	+
3UTR-intron	ENST00000462445	ENST00000242465		ChiTaRS3.1			BP217490	SRGN	chr10	70864133	+	SRGN	chr10	70847859	+
3UTR-3CDS	ENST00000242465	ENST00000462445		ChiTaRS3.1			BP217490	SRGN	chr10	70864133	+	SRGN	chr10	70847859	+
3UTR-intron	ENST00000242465	ENST00000242465		ChiTaRS3.1			BP217490	SRGN	chr10	70864133	+	SRGN	chr10	70847859	+
intron-3UTR	ENST00000260323	ENST00000294868		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000260323	ENST00000287713		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-intron	ENST00000260323	ENST00000473046		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000537900	ENST00000294868		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000537900	ENST00000287713		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-intron	ENST00000537900	ENST00000473046		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000545554	ENST00000294868		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000545554	ENST00000287713		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-intron	ENST00000545554	ENST00000473046		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000539562	ENST00000294868		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-3UTR	ENST00000539562	ENST00000287713		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-intron	ENST00000539562	ENST00000473046		ChiTaRS3.1			AK126960	UNC13C	chr15	54388134	+	NMNAT2	chr1	183218069	-
intron-intron	ENST00000254066	ENST00000254066		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000254066	ENST00000394089		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000254066	ENST00000425707		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000254066	ENST00000394086		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000254066	ENST00000394081		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000254066	ENST00000420042		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394089	ENST00000254066		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394089	ENST00000394089		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394089	ENST00000425707		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394089	ENST00000394086		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394089	ENST00000394081		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394089	ENST00000420042		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000425707	ENST00000254066		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000425707	ENST00000394089		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000425707	ENST00000425707		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000425707	ENST00000394086		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000425707	ENST00000394081		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000425707	ENST00000420042		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394086	ENST00000254066		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394086	ENST00000394089		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394086	ENST00000425707		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394086	ENST00000394086		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394086	ENST00000394081		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394086	ENST00000420042		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394081	ENST00000254066		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394081	ENST00000394089		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394081	ENST00000425707		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394081	ENST00000394086		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394081	ENST00000394081		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000394081	ENST00000420042		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000420042	ENST00000254066		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000420042	ENST00000394089		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000420042	ENST00000425707		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000420042	ENST00000394086		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000420042	ENST00000394081		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-intron	ENST00000420042	ENST00000420042		ChiTaRS3.1			AI359500	RARA	chr17	38551774	+	RARA	chr17	38545730	+
intron-3UTR	ENST00000527001	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000257831	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000450654	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000530286	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000533754	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000531728	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000531794	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
intron-3UTR	ENST00000527935	ENST00000005178		ChiTaRS3.1			AW992900	EHF	chr11	34684241	-	PDK4	chr7	95214085	+
In-frame	ENST00000358026	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000358026	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000358026	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000344626	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000344626	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000429416	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000429416	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000541122	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000541122	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000589677	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000589677	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000444061	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000444061	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000590574	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000590574	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000413806	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000413806	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
In-frame	ENST00000450717	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
5CDS-intron	ENST00000450717	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000358026		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000344626		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000429416		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000541122		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000589677		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000444061		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000590574		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000413806		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-3CDS	ENST00000538456	ENST00000450717		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
3UTR-intron	ENST00000538456	ENST00000538456		ChiTaRS3.1			BI040670	SMARCA4	chr19	11144176	+	SMARCA4	chr19	11144085	-
intron-3UTR	ENST00000544798	ENST00000542454		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000554311		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000306005		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000539359		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000542454		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000554311		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000306005		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000539359		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000542454		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000554311		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000306005		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000539359		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000542454		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000554311		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000306005		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000539359		ChiTaRS3.1			BE466880	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-intron	ENST00000536402	ENST00000536402		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-3UTR	ENST00000536402	ENST00000281092		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000536402	ENST00000502752		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000536402	ENST00000438717		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
3UTR-intron	ENST00000281092	ENST00000536402		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
3UTR-3UTR	ENST00000281092	ENST00000281092		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
3UTR-intron	ENST00000281092	ENST00000502752		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
3UTR-intron	ENST00000281092	ENST00000438717		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000502752	ENST00000536402		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-3UTR	ENST00000502752	ENST00000281092		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000502752	ENST00000502752		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000502752	ENST00000438717		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000438717	ENST00000536402		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-3UTR	ENST00000438717	ENST00000281092		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000438717	ENST00000502752		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000438717	ENST00000438717		ChiTaRS3.1			DW420350	FER	chr5	108529153	+	FER	chr5	108528358	+
intron-intron	ENST00000468573	ENST00000468573		ChiTaRS3.1			CV402170	CHRM3	chr1	239648846	-	CHRM3	chr1	239651741	-
intron-intron	ENST00000468573	ENST00000255380		ChiTaRS3.1			CV402170	CHRM3	chr1	239648846	-	CHRM3	chr1	239651741	-
intron-intron	ENST00000255380	ENST00000468573		ChiTaRS3.1			CV402170	CHRM3	chr1	239648846	-	CHRM3	chr1	239651741	-
intron-intron	ENST00000255380	ENST00000255380		ChiTaRS3.1			CV402170	CHRM3	chr1	239648846	-	CHRM3	chr1	239651741	-
intron-intron	ENST00000292246	ENST00000292246		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000292246	ENST00000350459		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000292246	ENST00000396091		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000292246	ENST00000414522		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000292246	ENST00000451430		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000292246	ENST00000495772		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000350459	ENST00000292246		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000350459	ENST00000350459		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000350459	ENST00000396091		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000350459	ENST00000414522		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000350459	ENST00000451430		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000350459	ENST00000495772		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000396091	ENST00000292246		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000396091	ENST00000350459		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000396091	ENST00000396091		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000396091	ENST00000414522		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000396091	ENST00000451430		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000396091	ENST00000495772		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000414522	ENST00000292246		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000414522	ENST00000350459		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000414522	ENST00000396091		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000414522	ENST00000414522		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000414522	ENST00000451430		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000414522	ENST00000495772		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000451430	ENST00000292246		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000451430	ENST00000350459		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000451430	ENST00000396091		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000451430	ENST00000414522		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000451430	ENST00000451430		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000451430	ENST00000495772		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000495772	ENST00000292246		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000495772	ENST00000350459		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000495772	ENST00000396091		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000495772	ENST00000414522		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000495772	ENST00000451430		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000495772	ENST00000495772		ChiTaRS3.1			Z20680	ANO10	chr3	43449556	-	ANO10	chr3	43442300	+
intron-intron	ENST00000520686	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520686	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521988	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000537541	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000518748	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000523580	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000520430	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517858	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000517540	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000378861	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524037	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000521617	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519069	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000524107	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000393923		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000412622		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000431670		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000393925		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000481953		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000495180		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000478922		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000477695		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000519969	ENST00000470699		ChiTaRS3.1			CV416510	TRIQK	chr8	93940889	-	PHLDB2	chr3	111668312	-
intron-intron	ENST00000398226	ENST00000398226		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000398226	ENST00000537379		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000398226	ENST00000531964		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-3UTR	ENST00000398226	ENST00000526049		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000537379	ENST00000398226		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000537379	ENST00000537379		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000537379	ENST00000531964		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-3UTR	ENST00000537379	ENST00000526049		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000531964	ENST00000398226		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000531964	ENST00000537379		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000531964	ENST00000531964		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-3UTR	ENST00000531964	ENST00000526049		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000526049	ENST00000398226		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000526049	ENST00000537379		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000526049	ENST00000531964		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-3UTR	ENST00000526049	ENST00000526049		ChiTaRS3.1			CN427890	VIMP	chr15	101812832	+	VIMP	chr15	101812770	-
intron-intron	ENST00000359263	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000359263		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000358334		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371501		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371502		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371489		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000485212		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371488		ChiTaRS3.1			AA528800	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN919080	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-3CDS	ENST00000322723	ENST00000532636		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-3CDS	ENST00000322723	ENST00000533540		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-3CDS	ENST00000322723	ENST00000453788		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-3CDS	ENST00000322723	ENST00000534624		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-3CDS	ENST00000322723	ENST00000227378		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-3CDS	ENST00000322723	ENST00000534319		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-3CDS	ENST00000322723	ENST00000526110		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-5UTR	ENST00000322723	ENST00000526862		ChiTaRS3.1			CV345070	NCL	chr2	232321412	+	HSPA8	chr11	122929903	-
intron-intron	ENST00000392870	ENST00000392870		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000392870	ENST00000369108		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000392870	ENST00000473264		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000369108	ENST00000392870		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000369108	ENST00000369108		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000369108	ENST00000473264		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000473264	ENST00000392870		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000473264	ENST00000369108		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-intron	ENST00000473264	ENST00000473264		ChiTaRS3.1			CV364610	GRK5	chr10	121007774	-	GRK5	chr10	121006210	+
intron-3UTR	ENST00000368026	ENST00000368026		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000368026	ENST00000289779		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000368026	ENST00000537746		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000368026	ENST00000472573		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-3UTR	ENST00000289779	ENST00000368026		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000289779	ENST00000289779		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000289779	ENST00000537746		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000289779	ENST00000472573		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-3UTR	ENST00000537746	ENST00000368026		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000537746	ENST00000289779		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000537746	ENST00000537746		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000537746	ENST00000472573		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-3UTR	ENST00000472573	ENST00000368026		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000472573	ENST00000289779		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000472573	ENST00000537746		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-intron	ENST00000472573	ENST00000472573		ChiTaRS3.1			C06030	F11R	chr1	160967433	+	F11R	chr1	160967268	-
intron-5UTR	ENST00000537442	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000537442	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000537442	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000537442	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000537442	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000537442	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000537442	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000537442	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000537442	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000382421	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000382421	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000382421	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000545200	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545200	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000545200	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000399466	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000399466	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000399466	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000322166	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000322166	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000322166	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000541778	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000541778	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000541778	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000542015	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000542015	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000542015	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000545915	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000545915	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000545915	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000400098		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000400100		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000400097		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-3UTR	ENST00000540228	ENST00000553597		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000390687		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000346403		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000554227		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-5UTR	ENST00000540228	ENST00000577565		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
intron-intron	ENST00000540228	ENST00000444203		ChiTaRS3.1			BF769740	NOP2	chr12	6666239	-	SNRPN	chr15	25213171	-
In-frame	ENST00000280154	ENST00000431239		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
In-frame	ENST00000280154	ENST00000369259		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
In-frame	ENST00000280154	ENST00000369258		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5CDS-3UTR	ENST00000280154	ENST00000467213		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5CDS-3UTR	ENST00000280154	ENST00000361293		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5UTR-3CDS	ENST00000393104	ENST00000431239		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5UTR-3CDS	ENST00000393104	ENST00000369259		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5UTR-3CDS	ENST00000393104	ENST00000369258		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5UTR-3UTR	ENST00000393104	ENST00000467213		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
5UTR-3UTR	ENST00000393104	ENST00000361293		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
intron-3CDS	ENST00000481353	ENST00000431239		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
intron-3CDS	ENST00000481353	ENST00000369259		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
intron-3CDS	ENST00000481353	ENST00000369258		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
intron-3UTR	ENST00000481353	ENST00000467213		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
intron-3UTR	ENST00000481353	ENST00000361293		ChiTaRS3.1			DA689020	PDCD4	chr10	112635830	+	CHD1L	chr1	146747014	+
3UTR-3UTR	ENST00000522455	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000522455	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000522455	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000522455	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000522455	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000522455	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000522455	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521695	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521268	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000518566	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000517638	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000523850	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000522455		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000521695		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000521268		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000518566		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000517638		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000523850		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
3UTR-3UTR	ENST00000521376	ENST00000521376		ChiTaRS3.1			BF108460	RALYL	chr8	85833477	-	RALYL	chr8	85833501	+
intron-3UTR	ENST00000486447	ENST00000555997		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
intron-3UTR	ENST00000486447	ENST00000439696		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
intron-intron	ENST00000486447	ENST00000336440		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
intron-intron	ENST00000486447	ENST00000408913		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
5UTR-3UTR	ENST00000238892	ENST00000555997		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
5UTR-3UTR	ENST00000238892	ENST00000439696		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
5UTR-intron	ENST00000238892	ENST00000336440		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
5UTR-intron	ENST00000238892	ENST00000408913		ChiTaRS3.1			AF123320	CRIPT	chr2	46844409	-	ZFP36L1	chr14	69255582	-
Frame-shit	ENST00000522208	ENST00000522208		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000522208	ENST00000521389		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000522208	ENST00000261947		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
5CDS-intron	ENST00000522208	ENST00000520564		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000521389	ENST00000522208		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000521389	ENST00000521389		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000521389	ENST00000261947		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
5CDS-intron	ENST00000521389	ENST00000520564		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000261947	ENST00000522208		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000261947	ENST00000521389		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
Frame-shit	ENST00000261947	ENST00000261947		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
5CDS-intron	ENST00000261947	ENST00000520564		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
intron-3CDS	ENST00000520564	ENST00000522208		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
intron-3CDS	ENST00000520564	ENST00000521389		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
intron-3CDS	ENST00000520564	ENST00000261947		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
intron-intron	ENST00000520564	ENST00000520564		ChiTaRS3.1			DA403680	RNF130	chr5	179407128	-	RNF130	chr5	179467564	-
intron-3UTR	ENST00000528282	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000530481	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000445890	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000337057	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000530757	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000392427	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000368128	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000527411	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000524581	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000525271	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000525193	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000527659	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000529208	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000531410	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000530148	ENST00000336314		ChiTaRS3.1			BM841980	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
3UTR-3CDS	ENST00000325881	ENST00000300026		ChiTaRS3.1			BQ299740	SNX22	chr15	64448227	-	PPIB	chr15	64454355	-
3UTR-intron	ENST00000325881	ENST00000558492		ChiTaRS3.1			BQ299740	SNX22	chr15	64448227	-	PPIB	chr15	64454355	-
intron-intron	ENST00000477049	ENST00000395965		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000477049	ENST00000505869		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000477049	ENST00000509739		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000477049	ENST00000509163		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000477049	ENST00000504768		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000224140	ENST00000395965		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000224140	ENST00000505869		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000224140	ENST00000509739		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000224140	ENST00000509163		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000224140	ENST00000504768		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000393220	ENST00000395965		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000393220	ENST00000505869		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000393220	ENST00000509739		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000393220	ENST00000509163		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000393220	ENST00000504768		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000372169	ENST00000395965		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000372169	ENST00000505869		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000372169	ENST00000509739		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000372169	ENST00000509163		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-intron	ENST00000372169	ENST00000504768		ChiTaRS3.1			BF842920	SETX	chr9	135218194	-	FAM172A	chr5	93267976	+
intron-3UTR	ENST00000317025	ENST00000570123		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000317025	ENST00000568794		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000317025	ENST00000253452		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000317025	ENST00000562336		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000317025	ENST00000561569		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000317025	ENST00000564903		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000433384	ENST00000570123		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000433384	ENST00000568794		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000433384	ENST00000253452		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000433384	ENST00000562336		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000433384	ENST00000561569		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000433384	ENST00000564903		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000527502	ENST00000570123		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000527502	ENST00000568794		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000527502	ENST00000253452		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000527502	ENST00000562336		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000527502	ENST00000561569		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000527502	ENST00000564903		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000316985	ENST00000570123		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000316985	ENST00000568794		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000316985	ENST00000253452		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000316985	ENST00000562336		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000316985	ENST00000561569		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000316985	ENST00000564903		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000525081	ENST00000570123		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000525081	ENST00000568794		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000525081	ENST00000253452		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000525081	ENST00000562336		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000525081	ENST00000561569		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
intron-3UTR	ENST00000525081	ENST00000564903		ChiTaRS3.1			BG977610	WHSC1L1	chr8	38189107	+	COX4I1	chr16	85838624	+
3UTR-3CDS	ENST00000304987	ENST00000304987		ChiTaRS3.1			CK001240	SIK2	chr11	111596584	+	SIK2	chr11	111594336	+
3UTR-intron	ENST00000304987	ENST00000533868		ChiTaRS3.1			CK001240	SIK2	chr11	111596584	+	SIK2	chr11	111594336	+
intron-3CDS	ENST00000533868	ENST00000304987		ChiTaRS3.1			CK001240	SIK2	chr11	111596584	+	SIK2	chr11	111594336	+
intron-intron	ENST00000533868	ENST00000533868		ChiTaRS3.1			CK001240	SIK2	chr11	111596584	+	SIK2	chr11	111594336	+
intron-intron	ENST00000326793	ENST00000275262		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000326793	ENST00000392127		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000326793	ENST00000453779		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000326793	ENST00000361752		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000326793	ENST00000361195		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000326793	ENST00000424802		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000472860	ENST00000275262		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000472860	ENST00000392127		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000472860	ENST00000453779		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000472860	ENST00000361752		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000472860	ENST00000361195		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
intron-intron	ENST00000472860	ENST00000424802		ChiTaRS3.1			AK021880	ACAP2	chr3	195001275	-	QKI	chr6	163931554	+
3UTR-3CDS	ENST00000398532	ENST00000223073		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
3UTR-intron	ENST00000398532	ENST00000481788		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
3UTR-intron	ENST00000398532	ENST00000415472		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-3CDS	ENST00000577454	ENST00000223073		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000577454	ENST00000481788		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000577454	ENST00000415472		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-3CDS	ENST00000578648	ENST00000223073		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000578648	ENST00000481788		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000578648	ENST00000415472		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-3CDS	ENST00000579565	ENST00000223073		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000579565	ENST00000481788		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000579565	ENST00000415472		ChiTaRS3.1			BQ336160	MSL1	chr17	38292795	+	RBM28	chr7	127979769	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000504114		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000357505		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000399396		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000446957		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000267068		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000504114		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000357505		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000399396		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000446957		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000267068		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000504114		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000357505		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000399396		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000446957		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000267068		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000504114		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000357505		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000399396		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000446957		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000267068		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000504114		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000357505		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000399396		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000446957		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000267068		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000504114		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000357505		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000399396		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000446957		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000267068		ChiTaRS3.1			BG982040	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-3CDS	ENST00000389282	ENST00000389282		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000389282	ENST00000599910		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000389282	ENST00000263381		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000389282	ENST00000599686		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000389282	ENST00000545156		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599910	ENST00000389282		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599910	ENST00000599910		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599910	ENST00000263381		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599910	ENST00000599686		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599910	ENST00000545156		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000263381	ENST00000389282		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000263381	ENST00000599910		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000263381	ENST00000263381		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000263381	ENST00000599686		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000263381	ENST00000545156		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599686	ENST00000389282		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599686	ENST00000599910		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599686	ENST00000263381		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599686	ENST00000599686		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000599686	ENST00000545156		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000545156	ENST00000389282		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000545156	ENST00000599910		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000545156	ENST00000263381		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000545156	ENST00000599686		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-3CDS	ENST00000545156	ENST00000545156		ChiTaRS3.1			CN297530	WIZ	chr19	15537879	+	WIZ	chr19	15537827	-
intron-intron	ENST00000355413	ENST00000355413		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000355413	ENST00000473247		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000355413	ENST00000495028		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000355413	ENST00000535825		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000355413	ENST00000492693		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000473247	ENST00000355413		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000473247	ENST00000473247		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000473247	ENST00000495028		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000473247	ENST00000535825		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000473247	ENST00000492693		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000495028	ENST00000355413		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000495028	ENST00000473247		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000495028	ENST00000495028		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000495028	ENST00000535825		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000495028	ENST00000492693		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000535825	ENST00000355413		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000535825	ENST00000473247		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000535825	ENST00000495028		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000535825	ENST00000535825		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000535825	ENST00000492693		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000492693	ENST00000355413		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000492693	ENST00000473247		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000492693	ENST00000495028		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000492693	ENST00000535825		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
intron-intron	ENST00000492693	ENST00000492693		ChiTaRS3.1			CV333650	AGK	chr7	141295563	-	AGK	chr7	141295895	+
In-frame	ENST00000251775	ENST00000296220		ChiTaRS3.1			CB990530	SNX4	chr3	125238876	-	OSBPL11	chr3	125286440	-
5UTR-3CDS	ENST00000536067	ENST00000296220		ChiTaRS3.1			CB990530	SNX4	chr3	125238876	-	OSBPL11	chr3	125286440	-
5UTR-3CDS	ENST00000473417	ENST00000296220		ChiTaRS3.1			CB990530	SNX4	chr3	125238876	-	OSBPL11	chr3	125286440	-
intron-intron	ENST00000342085	ENST00000264638		ChiTaRS3.1			CA390240	PDPK1	chr16	2644267	+	CNTNAP1	chr17	40842024	+
intron-intron	ENST00000441549	ENST00000264638		ChiTaRS3.1			CA390240	PDPK1	chr16	2644267	+	CNTNAP1	chr17	40842024	+
intron-intron	ENST00000268673	ENST00000264638		ChiTaRS3.1			CA390240	PDPK1	chr16	2644267	+	CNTNAP1	chr17	40842024	+
intron-intron	ENST00000354836	ENST00000264638		ChiTaRS3.1			CA390240	PDPK1	chr16	2644267	+	CNTNAP1	chr17	40842024	+
intron-intron	ENST00000389224	ENST00000264638		ChiTaRS3.1			CA390240	PDPK1	chr16	2644267	+	CNTNAP1	chr17	40842024	+
intron-intron	ENST00000471311	ENST00000264638		ChiTaRS3.1			CA390240	PDPK1	chr16	2644267	+	CNTNAP1	chr17	40842024	+
intron-intron	ENST00000527185	ENST00000527185		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000527185	ENST00000528682		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000527185	ENST00000524871		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000527185	ENST00000418526		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000527185	ENST00000279463		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000527185	ENST00000524560		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000528682	ENST00000527185		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000528682	ENST00000528682		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000528682	ENST00000524871		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000528682	ENST00000418526		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000528682	ENST00000279463		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000528682	ENST00000524560		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524871	ENST00000527185		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524871	ENST00000528682		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524871	ENST00000524871		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524871	ENST00000418526		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524871	ENST00000279463		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524871	ENST00000524560		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000418526	ENST00000527185		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000418526	ENST00000528682		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000418526	ENST00000524871		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000418526	ENST00000418526		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000418526	ENST00000279463		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000418526	ENST00000524560		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000279463	ENST00000527185		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000279463	ENST00000528682		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000279463	ENST00000524871		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000279463	ENST00000418526		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000279463	ENST00000279463		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000279463	ENST00000524560		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524560	ENST00000527185		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524560	ENST00000528682		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524560	ENST00000524871		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524560	ENST00000418526		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524560	ENST00000279463		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-intron	ENST00000524560	ENST00000524560		ChiTaRS3.1			H46910	CNTN5	chr11	98991806	+	CNTN5	chr11	98986459	+
intron-3UTR	ENST00000265361	ENST00000265361		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000265361	ENST00000544525		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000265361	ENST00000419255		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000265361	ENST00000536800		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000265361	ENST00000487621		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-3UTR	ENST00000544525	ENST00000265361		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000544525	ENST00000544525		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000544525	ENST00000419255		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000544525	ENST00000536800		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000544525	ENST00000487621		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-3UTR	ENST00000419255	ENST00000265361		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000419255	ENST00000544525		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000419255	ENST00000419255		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000419255	ENST00000536800		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000419255	ENST00000487621		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-3UTR	ENST00000536800	ENST00000265361		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000536800	ENST00000544525		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000536800	ENST00000419255		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000536800	ENST00000536800		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000536800	ENST00000487621		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-3UTR	ENST00000487621	ENST00000265361		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000487621	ENST00000544525		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000487621	ENST00000419255		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000487621	ENST00000536800		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000487621	ENST00000487621		ChiTaRS3.1			AW367430	SEMA3C	chr7	80372825	+	SEMA3C	chr7	80372854	-
intron-intron	ENST00000400427	ENST00000511072		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000442529		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000378398		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000441472		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000378391		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000514189		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000270722		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400427	ENST00000512462		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000511072		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000442529		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000378398		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000441472		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000378391		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000514189		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000270722		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400424	ENST00000512462		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000511072		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000442529		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000378398		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000441472		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000378391		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000514189		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000270722		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408910	ENST00000512462		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000511072		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000442529		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000378398		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000441472		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000378391		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000514189		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000270722		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000408989	ENST00000512462		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000511072		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000442529		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000378398		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000441472		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000378391		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000514189		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000270722		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-intron	ENST00000400423	ENST00000512462		ChiTaRS3.1			EL582620	UMODL1	chr21	43542800	+	PRDM16	chr1	3031173	-
intron-3CDS	ENST00000457422	ENST00000422514		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000457422	ENST00000496182		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000457422	ENST00000394938		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000457422	ENST00000472628		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-3CDS	ENST00000315286	ENST00000422514		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000315286	ENST00000496182		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000315286	ENST00000394938		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000315286	ENST00000472628		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-3CDS	ENST00000588210	ENST00000422514		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000588210	ENST00000496182		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000588210	ENST00000394938		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
intron-intron	ENST00000588210	ENST00000472628		ChiTaRS3.1			BQ943640	CCDC43	chr17	42761280	+	RPL23A	chr17	27047024	+
3UTR-intron	ENST00000219022	ENST00000264093		ChiTaRS3.1			AW936940	OLFM4	chr13	53625570	-	DGUOK	chr2	74160102	+
3UTR-intron	ENST00000219022	ENST00000348222		ChiTaRS3.1			AW936940	OLFM4	chr13	53625570	-	DGUOK	chr2	74160102	+
3UTR-intron	ENST00000219022	ENST00000462685		ChiTaRS3.1			AW936940	OLFM4	chr13	53625570	-	DGUOK	chr2	74160102	+
3UTR-intron	ENST00000219022	ENST00000356837		ChiTaRS3.1			AW936940	OLFM4	chr13	53625570	-	DGUOK	chr2	74160102	+
3UTR-3UTR	ENST00000310447	ENST00000310447		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
3UTR-intron	ENST00000310447	ENST00000493642		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
3UTR-intron	ENST00000310447	ENST00000392925		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-3UTR	ENST00000493642	ENST00000310447		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-intron	ENST00000493642	ENST00000493642		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-intron	ENST00000493642	ENST00000392925		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-3UTR	ENST00000392925	ENST00000310447		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-intron	ENST00000392925	ENST00000493642		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-intron	ENST00000392925	ENST00000392925		ChiTaRS3.1			CA312800	CASP2	chr7	143004735	-	CASP2	chr7	143004598	+
intron-3UTR	ENST00000304987	ENST00000310653		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-3UTR	ENST00000304987	ENST00000336083		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000304987	ENST00000536566		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000304987	ENST00000541588		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-3UTR	ENST00000533868	ENST00000310653		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-3UTR	ENST00000533868	ENST00000336083		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000533868	ENST00000536566		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000533868	ENST00000541588		ChiTaRS3.1			AW891070	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
3UTR-3UTR	ENST00000215071	ENST00000393810		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-5UTR	ENST00000215071	ENST00000495706		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000215071	ENST00000393812		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000215071	ENST00000537814		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000215071	ENST00000538577		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000602911	ENST00000393810		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-5UTR	ENST00000602911	ENST00000495706		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000602911	ENST00000393812		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000602911	ENST00000537814		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3UTR	ENST00000602911	ENST00000538577		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
intron-3UTR	ENST00000592035	ENST00000393810		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
intron-5UTR	ENST00000592035	ENST00000495706		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
intron-3UTR	ENST00000592035	ENST00000393812		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
intron-3UTR	ENST00000592035	ENST00000537814		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
intron-3UTR	ENST00000592035	ENST00000538577		ChiTaRS3.1			AA437370	PSMD8	chr19	38874402	-	SLC35B2	chr6	44222415	+
3UTR-3CDS	ENST00000343150	ENST00000343150		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3CDS	ENST00000343150	ENST00000340342		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3UTR	ENST00000343150	ENST00000495822		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-intron	ENST00000343150	ENST00000342020		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3CDS	ENST00000340342	ENST00000343150		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3CDS	ENST00000340342	ENST00000340342		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3UTR	ENST00000340342	ENST00000495822		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-intron	ENST00000340342	ENST00000342020		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3CDS	ENST00000495822	ENST00000343150		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3CDS	ENST00000495822	ENST00000340342		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-3UTR	ENST00000495822	ENST00000495822		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
3UTR-intron	ENST00000495822	ENST00000342020		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
intron-3CDS	ENST00000342020	ENST00000343150		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
intron-3CDS	ENST00000342020	ENST00000340342		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
intron-3UTR	ENST00000342020	ENST00000495822		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
intron-intron	ENST00000342020	ENST00000342020		ChiTaRS3.1			BQ774810	CTSL	chr9	90346070	-	CTSL	chr9	90344596	+
intron-5UTR	ENST00000474885	ENST00000435765		ChiTaRS3.1			DB260350	RNA5-8S5	chr?	156151	+	PSMC2	chr7	102988091	+
intron-5UTR	ENST00000474885	ENST00000292644		ChiTaRS3.1			DB260350	RNA5-8S5	chr?	156151	+	PSMC2	chr7	102988091	+
intron-intron	ENST00000474885	ENST00000544811		ChiTaRS3.1			DB260350	RNA5-8S5	chr?	156151	+	PSMC2	chr7	102988091	+
5CDS-5UTR	ENST00000459522	ENST00000435765		ChiTaRS3.1			DB260350	RNA5-8S5	chr?	156151	+	PSMC2	chr7	102988091	+
5CDS-5UTR	ENST00000459522	ENST00000292644		ChiTaRS3.1			DB260350	RNA5-8S5	chr?	156151	+	PSMC2	chr7	102988091	+
5CDS-intron	ENST00000459522	ENST00000544811		ChiTaRS3.1			DB260350	RNA5-8S5	chr?	156151	+	PSMC2	chr7	102988091	+
intron-intron	ENST00000260665	ENST00000368679		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000260665	ENST00000368676		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000260665	ENST00000467145		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000409946	ENST00000368679		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000409946	ENST00000368676		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000409946	ENST00000467145		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000409659	ENST00000368679		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000409659	ENST00000368676		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-intron	ENST00000409659	ENST00000467145		ChiTaRS3.1			BF994360	LRPPRC	chr2	44126431	+	ADAM12	chr10	127712284	-
intron-3CDS	ENST00000221476	ENST00000221476		ChiTaRS3.1			F01290	CKM	chr19	45821136	+	CKM	chr19	45818819	-
intron-intron	ENST00000322357	ENST00000513208		ChiTaRS3.1			AI052500	ZBTB7A	chr19	4046660	+	DKK2	chr4	107945872	+
intron-intron	ENST00000322357	ENST00000510463		ChiTaRS3.1			AI052500	ZBTB7A	chr19	4046660	+	DKK2	chr4	107945872	+
intron-intron	ENST00000322357	ENST00000285311		ChiTaRS3.1			AI052500	ZBTB7A	chr19	4046660	+	DKK2	chr4	107945872	+
intron-intron	ENST00000601588	ENST00000513208		ChiTaRS3.1			AI052500	ZBTB7A	chr19	4046660	+	DKK2	chr4	107945872	+
intron-intron	ENST00000601588	ENST00000510463		ChiTaRS3.1			AI052500	ZBTB7A	chr19	4046660	+	DKK2	chr4	107945872	+
intron-intron	ENST00000601588	ENST00000285311		ChiTaRS3.1			AI052500	ZBTB7A	chr19	4046660	+	DKK2	chr4	107945872	+
In-frame	ENST00000377046	ENST00000377046		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000377046	ENST00000352980		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000377046	ENST00000341318		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000377046	ENST00000530446		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-5UTR	ENST00000377046	ENST00000534650		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-intron	ENST00000377046	ENST00000525204		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000352980	ENST00000377046		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000352980	ENST00000352980		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000352980	ENST00000341318		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000352980	ENST00000530446		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-5UTR	ENST00000352980	ENST00000534650		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-intron	ENST00000352980	ENST00000525204		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000341318	ENST00000377046		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000341318	ENST00000352980		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000341318	ENST00000341318		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000341318	ENST00000530446		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-5UTR	ENST00000341318	ENST00000534650		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-intron	ENST00000341318	ENST00000525204		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000530446	ENST00000377046		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000530446	ENST00000352980		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000530446	ENST00000341318		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000530446	ENST00000530446		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-5UTR	ENST00000530446	ENST00000534650		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-intron	ENST00000530446	ENST00000525204		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000534650	ENST00000377046		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000534650	ENST00000352980		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000534650	ENST00000341318		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
In-frame	ENST00000534650	ENST00000530446		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-5UTR	ENST00000534650	ENST00000534650		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
5CDS-intron	ENST00000534650	ENST00000525204		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-3CDS	ENST00000525204	ENST00000377046		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-3CDS	ENST00000525204	ENST00000352980		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-3CDS	ENST00000525204	ENST00000341318		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-3CDS	ENST00000525204	ENST00000530446		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-5UTR	ENST00000525204	ENST00000534650		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-intron	ENST00000525204	ENST00000525204		ChiTaRS3.1			AA344110	KAT5	chr11	65484234	+	KAT5	chr11	65481975	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			AW894730	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-3CDS	ENST00000452135	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000302640		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000354582		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000423119		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000456211		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000357086		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000544951		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000443694		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000463980		ChiTaRS3.1			AI363310	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3UTR	ENST00000331817	ENST00000359337		ChiTaRS3.1			BF087400	KRT7	chr12	52638511	+	PLXNB2	chr22	50713901	-
intron-3UTR	ENST00000331817	ENST00000449103		ChiTaRS3.1			BF087400	KRT7	chr12	52638511	+	PLXNB2	chr22	50713901	-
intron-intron	ENST00000331817	ENST00000496720		ChiTaRS3.1			BF087400	KRT7	chr12	52638511	+	PLXNB2	chr22	50713901	-
intron-3UTR	ENST00000552322	ENST00000359337		ChiTaRS3.1			BF087400	KRT7	chr12	52638511	+	PLXNB2	chr22	50713901	-
intron-3UTR	ENST00000552322	ENST00000449103		ChiTaRS3.1			BF087400	KRT7	chr12	52638511	+	PLXNB2	chr22	50713901	-
intron-intron	ENST00000552322	ENST00000496720		ChiTaRS3.1			BF087400	KRT7	chr12	52638511	+	PLXNB2	chr22	50713901	-
intron-intron	ENST00000283882	ENST00000283882		ChiTaRS3.1			AW936390	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-intron	ENST00000283882	ENST00000564286		ChiTaRS3.1			AW936390	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-intron	ENST00000564286	ENST00000283882		ChiTaRS3.1			AW936390	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-intron	ENST00000564286	ENST00000564286		ChiTaRS3.1			AW936390	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-3UTR	ENST00000244769	ENST00000244769		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-3UTR	ENST00000244769	ENST00000436367		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-intron	ENST00000244769	ENST00000467008		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-3UTR	ENST00000436367	ENST00000244769		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-3UTR	ENST00000436367	ENST00000436367		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-intron	ENST00000436367	ENST00000467008		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-3UTR	ENST00000467008	ENST00000244769		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-3UTR	ENST00000467008	ENST00000436367		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-intron	ENST00000467008	ENST00000467008		ChiTaRS3.1			DA486880	ATXN1	chr6	16301613	+	ATXN1	chr6	16302402	-
intron-3CDS	ENST00000299381	ENST00000490882		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000429972		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000295956		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000358537		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000357272		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000348383		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000493452		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000419752		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000299381	ENST00000484981		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-3CDS	ENST00000470481	ENST00000490882		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000429972		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000295956		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000358537		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000357272		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000348383		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000493452		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000419752		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000470481	ENST00000484981		ChiTaRS3.1			BG952180	ANAPC16	chr10	73772635	+	FLNB	chr3	58117648	-
intron-intron	ENST00000419277	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000419277	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000419277	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000419277	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000419277	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000419277	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000428995	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000428995	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000428995	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000428995	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000428995	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000428995	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000463066	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000463066	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000463066	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000463066	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000463066	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000463066	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000443117	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000443117	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000443117	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000443117	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000443117	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000443117	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551196	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551196	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551196	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551196	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551196	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551196	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000480521	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000480521	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000480521	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000480521	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000480521	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000480521	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000415247	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000415247	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000415247	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000415247	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000415247	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000415247	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000484255	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000484255	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000484255	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000484255	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000484255	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000484255	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000454805	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000454805	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000454805	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000454805	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000454805	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000454805	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000549300	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000549300	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000549300	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000549300	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000549300	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000549300	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000475500	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000475500	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000475500	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000475500	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000475500	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000475500	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000374808	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000374808	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000374808	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000374808	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000374808	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000374808	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000552158	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000552158	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000552158	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000552158	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000552158	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000552158	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000488565	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000488565	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000488565	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000488565	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000488565	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000488565	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000383224	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000383224	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000383224	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000383224	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000383224	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000383224	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551933	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551933	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551933	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551933	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551933	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000551933	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000474244	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000474244	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000474244	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000474244	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000474244	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000474244	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000422504	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000422504	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000422504	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000422504	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000422504	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000422504	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550806	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550806	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550806	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550806	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550806	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550806	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000494775	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000494775	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000494775	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000494775	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000494775	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000494775	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000515317	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000515317	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000515317	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000515317	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000515317	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000515317	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550456	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550456	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550456	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550456	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550456	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000550456	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000502285	ENST00000275262		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000502285	ENST00000392127		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000502285	ENST00000453779		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000502285	ENST00000361752		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000502285	ENST00000361195		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-intron	ENST00000502285	ENST00000424802		ChiTaRS3.1			BF933470	HLA-DPA1	chr6	4517498	-	QKI	chr6	163968766	+
intron-3CDS	ENST00000262429	ENST00000262429		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3CDS	ENST00000262429	ENST00000416219		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3UTR	ENST00000262429	ENST00000420010		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3CDS	ENST00000416219	ENST00000262429		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3CDS	ENST00000416219	ENST00000416219		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3UTR	ENST00000416219	ENST00000420010		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3CDS	ENST00000420010	ENST00000262429		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3CDS	ENST00000420010	ENST00000416219		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-3UTR	ENST00000420010	ENST00000420010		ChiTaRS3.1			CV361800	ATP2C2	chr16	84468569	-	ATP2C2	chr16	84474498	-
intron-intron	ENST00000561924	ENST00000476233		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
intron-intron	ENST00000561924	ENST00000354667		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
intron-intron	ENST00000561924	ENST00000356674		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
3UTR-intron	ENST00000290858	ENST00000476233		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
3UTR-intron	ENST00000290858	ENST00000354667		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
3UTR-intron	ENST00000290858	ENST00000356674		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
3UTR-intron	ENST00000412916	ENST00000476233		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
3UTR-intron	ENST00000412916	ENST00000354667		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
3UTR-intron	ENST00000412916	ENST00000356674		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
intron-intron	ENST00000568858	ENST00000476233		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
intron-intron	ENST00000568858	ENST00000354667		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
intron-intron	ENST00000568858	ENST00000356674		ChiTaRS3.1			BF830480	CBFB	chr16	67134005	-	HNRNPA2B1	chr7	26236224	+
intron-3UTR	ENST00000220763	ENST00000315792		ChiTaRS3.1			AF116660	CPQ	chr8	97842591	-	C8orf4	chr8	40011553	+
intron-3UTR	ENST00000529551	ENST00000315792		ChiTaRS3.1			AF116660	CPQ	chr8	97842591	-	C8orf4	chr8	40011553	+
5CDS-intron	ENST00000305877	ENST00000425967		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397091		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000447712		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000341462		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000532791		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397113		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000356207		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000335922		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000326324		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397103		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000397108		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000305877	ENST00000496629		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000425967		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397091		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000447712		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000341462		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000532791		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397113		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000356207		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000335922		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000326324		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397103		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000397108		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
5CDS-intron	ENST00000359540	ENST00000496629		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000425967		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397091		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000447712		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000341462		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000532791		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397113		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000356207		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000335922		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000326324		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397103		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000397108		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000398512	ENST00000496629		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000425967		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397091		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000447712		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000341462		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000532791		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397113		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000356207		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000335922		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000326324		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397103		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000397108		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-intron	ENST00000436990	ENST00000496629		ChiTaRS3.1			AB742170	BCR	chr22	23603730	+	FGFR1	chr8	38275904	-
intron-3UTR	ENST00000263863	ENST00000303577		ChiTaRS3.1			BF878790	GNLY	chr2	85924055	-	PCBP1	chr2	70316033	+
intron-3UTR	ENST00000524600	ENST00000303577		ChiTaRS3.1			BF878790	GNLY	chr2	85924055	-	PCBP1	chr2	70316033	+
intron-3UTR	ENST00000533041	ENST00000303577		ChiTaRS3.1			BF878790	GNLY	chr2	85924055	-	PCBP1	chr2	70316033	+
intron-3UTR	ENST00000409696	ENST00000303577		ChiTaRS3.1			BF878790	GNLY	chr2	85924055	-	PCBP1	chr2	70316033	+
intron-intron	ENST00000485577	ENST00000259075		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000457476		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000392749		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000461338		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000402568		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000406287		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000405852		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000403609		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000259075		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000457476		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000392749		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000461338		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000402568		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000406287		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000405852		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000403609		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000259075		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000457476		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000392749		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000461338		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000402568		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000406287		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000405852		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000403609		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000259075		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000457476		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000392749		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000461338		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000402568		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000406287		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000405852		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000403609		ChiTaRS3.1			AW812280	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-3UTR	ENST00000518857	ENST00000518857		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000518857	ENST00000395862		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000518857	ENST00000521514		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000518857	ENST00000518738		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000518857		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000395862		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000521514		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000518738		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000518857		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000395862		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000521514		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000518738		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000518857		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000395862		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000521514		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000518738		ChiTaRS3.1			BM979210	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-intron	ENST00000261921	ENST00000261921		ChiTaRS3.1			DA809120	LOXL1	chr15	74244234	+	LOXL1	chr15	74220699	+
3UTR-intron	ENST00000261921	ENST00000567675		ChiTaRS3.1			DA809120	LOXL1	chr15	74244234	+	LOXL1	chr15	74220699	+
3UTR-intron	ENST00000567675	ENST00000261921		ChiTaRS3.1			DA809120	LOXL1	chr15	74244234	+	LOXL1	chr15	74220699	+
3UTR-intron	ENST00000567675	ENST00000567675		ChiTaRS3.1			DA809120	LOXL1	chr15	74244234	+	LOXL1	chr15	74220699	+
intron-intron	ENST00000402746	ENST00000402746		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000402746	ENST00000399654		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000402746	ENST00000406869		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000402746	ENST00000265854		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000402746	ENST00000486340		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000399654	ENST00000402746		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000399654	ENST00000399654		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000399654	ENST00000406869		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000399654	ENST00000265854		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000399654	ENST00000486340		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000406869	ENST00000402746		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000406869	ENST00000399654		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000406869	ENST00000406869		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000406869	ENST00000265854		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000406869	ENST00000486340		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000265854	ENST00000402746		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000265854	ENST00000399654		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000265854	ENST00000406869		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000265854	ENST00000265854		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000265854	ENST00000486340		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000486340	ENST00000402746		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000486340	ENST00000399654		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000486340	ENST00000406869		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000486340	ENST00000265854		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
intron-intron	ENST00000486340	ENST00000486340		ChiTaRS3.1			AA706490	MAD1L1	chr7	1913398	-	MAD1L1	chr7	1913975	+
5UTR-5UTR	ENST00000319933	ENST00000438793		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-5UTR	ENST00000319933	ENST00000346918		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-5UTR	ENST00000319933	ENST00000379787		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-5UTR	ENST00000319933	ENST00000348126		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-intron	ENST00000319933	ENST00000304400		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-intron	ENST00000319933	ENST00000274392		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-intron	ENST00000319933	ENST00000455264		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
5UTR-intron	ENST00000319933	ENST00000513648		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000515669	ENST00000438793		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000515669	ENST00000346918		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000515669	ENST00000379787		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000515669	ENST00000348126		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000515669	ENST00000304400		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000515669	ENST00000274392		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000515669	ENST00000455264		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000515669	ENST00000513648		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000510890	ENST00000438793		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000510890	ENST00000346918		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000510890	ENST00000379787		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-5UTR	ENST00000510890	ENST00000348126		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000510890	ENST00000304400		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000510890	ENST00000274392		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000510890	ENST00000455264		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
intron-intron	ENST00000510890	ENST00000513648		ChiTaRS3.1			DA406720	C5orf30	chr5	102594599	+	PAM	chr5	102201526	+
Frame-shit	ENST00000377892	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377892	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377892	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377892	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377892	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377892	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000377892	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000377892	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377890	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377890	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377890	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377890	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377890	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377890	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000377890	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000377890	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000377891	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000377891	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000377891	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000377891	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000377891	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000377891	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000377891	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000377891	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377889	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377889	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377889	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377889	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377889	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000377889	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000377889	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000377889	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000535296	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000535296	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000535296	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000535296	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000535296	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000535296	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000535296	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000535296	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000338663	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000338663	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000338663	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000338663	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000338663	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000338663	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000338663	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000338663	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000538682	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000538682	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000538682	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000538682	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000538682	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
Frame-shit	ENST00000538682	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000538682	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000538682	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000536981	ENST00000377892		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000536981	ENST00000377890		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000536981	ENST00000377891		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000536981	ENST00000377889		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000536981	ENST00000535296		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
In-frame	ENST00000536981	ENST00000338663		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-3UTR	ENST00000536981	ENST00000538682		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
5CDS-5UTR	ENST00000536981	ENST00000536981		ChiTaRS3.1			BG472080	SLC3A2	chr11	62655929	+	SLC3A2	chr11	62652670	+
intron-3UTR	ENST00000321505	ENST00000534336		ChiTaRS3.1			BF825790	KIAA1549L	chr11	33581188	-	MALAT1	chr11	65266739	+
intron-3UTR	ENST00000389726	ENST00000534336		ChiTaRS3.1			BF825790	KIAA1549L	chr11	33581188	-	MALAT1	chr11	65266739	+
intron-3UTR	ENST00000265654	ENST00000534336		ChiTaRS3.1			BF825790	KIAA1549L	chr11	33581188	-	MALAT1	chr11	65266739	+
intron-intron	ENST00000356082	ENST00000407597		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000356082	ENST00000424279		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000356082	ENST00000536365		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000356082	ENST00000380961		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000356082	ENST00000217964		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000356082	ENST00000497555		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000391911	ENST00000407597		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000391911	ENST00000424279		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000391911	ENST00000536365		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000391911	ENST00000380961		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000391911	ENST00000217964		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000391911	ENST00000497555		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000367030	ENST00000407597		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000367030	ENST00000424279		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000367030	ENST00000536365		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000367030	ENST00000380961		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000367030	ENST00000217964		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
intron-intron	ENST00000367030	ENST00000497555		ChiTaRS3.1			BE140570	LAMB3	chr1	209789948	+	TBL1X	chrX	9485458	-
3UTR-intron	ENST00000248975	ENST00000336798		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000248975	ENST00000339394		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000248975	ENST00000471567		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000397492	ENST00000336798		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000397492	ENST00000339394		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000397492	ENST00000471567		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000471374	ENST00000336798		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000471374	ENST00000339394		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
3UTR-intron	ENST00000471374	ENST00000471567		ChiTaRS3.1			AW166100	YWHAH	chr22	32353196	-	SDC3	chr1	31378159	-
intron-intron	ENST00000450461	ENST00000450461		ChiTaRS3.1			BE894400	ZRANB2-AS1	chr1	71529452	+	ZRANB2-AS1	chr1	71529408	-
intron-intron	ENST00000450461	ENST00000426999		ChiTaRS3.1			BE894400	ZRANB2-AS1	chr1	71529452	+	ZRANB2-AS1	chr1	71529408	-
intron-intron	ENST00000426999	ENST00000450461		ChiTaRS3.1			BE894400	ZRANB2-AS1	chr1	71529452	+	ZRANB2-AS1	chr1	71529408	-
intron-intron	ENST00000426999	ENST00000426999		ChiTaRS3.1			BE894400	ZRANB2-AS1	chr1	71529452	+	ZRANB2-AS1	chr1	71529408	-
3UTR-3UTR	ENST00000466490	ENST00000466490		ChiTaRS3.1			CA313980	SRPRB	chr3	133539350	-	SRPRB	chr3	133539145	+
5CDS-3UTR	ENST00000318003	ENST00000255764		ChiTaRS3.1			BU686640	CC2D1A	chr19	14041197	-	MED10	chr5	6372334	-
5CDS-3UTR	ENST00000589606	ENST00000255764		ChiTaRS3.1			BU686640	CC2D1A	chr19	14041197	-	MED10	chr5	6372334	-
3UTR-3UTR	ENST00000306107	ENST00000306107		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000306107	ENST00000472644		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000306107	ENST00000481337		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000306107	ENST00000486979		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000306107	ENST00000389927		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000472644	ENST00000306107		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000472644	ENST00000472644		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000472644	ENST00000481337		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000472644	ENST00000486979		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000472644	ENST00000389927		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000481337	ENST00000306107		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000481337	ENST00000472644		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000481337	ENST00000481337		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000481337	ENST00000486979		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000481337	ENST00000389927		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000486979	ENST00000306107		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000486979	ENST00000472644		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000486979	ENST00000481337		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000486979	ENST00000486979		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000486979	ENST00000389927		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000389927	ENST00000306107		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000389927	ENST00000472644		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000389927	ENST00000481337		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000389927	ENST00000486979		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000389927	ENST00000389927		ChiTaRS3.1			BM971400	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
5CDS-intron	ENST00000358161	ENST00000394480		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000557856		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000357724		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000355254		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000360948		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000542733		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000558676		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000317501		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000558306		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000358161	ENST00000540489		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000394480		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000557856		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000357724		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000355254		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000360948		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000542733		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000558676		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000317501		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000558306		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372739	ENST00000540489		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000394480		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000557856		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000357724		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000355254		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000360948		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000542733		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000558676		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000317501		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000558306		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
5CDS-intron	ENST00000372731	ENST00000540489		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000394480		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000557856		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000357724		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000355254		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000360948		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000542733		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000558676		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000317501		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000558306		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-intron	ENST00000475367	ENST00000540489		ChiTaRS3.1			AW498510	SPTAN1	chr9	131345129	+	NTRK3	chr15	88450913	-
intron-3UTR	ENST00000379561	ENST00000379561		ChiTaRS3.1			BI495640	FOXO1	chr13	41129907	-	FOXO1	chr13	41129907	+
intron-intron	ENST00000379561	ENST00000473775		ChiTaRS3.1			BI495640	FOXO1	chr13	41129907	-	FOXO1	chr13	41129907	+
intron-3UTR	ENST00000473775	ENST00000379561		ChiTaRS3.1			BI495640	FOXO1	chr13	41129907	-	FOXO1	chr13	41129907	+
intron-intron	ENST00000473775	ENST00000473775		ChiTaRS3.1			BI495640	FOXO1	chr13	41129907	-	FOXO1	chr13	41129907	+
Frame-shit	ENST00000053867	ENST00000053867		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
Frame-shit	ENST00000053867	ENST00000589265		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
5CDS-intron	ENST00000053867	ENST00000589923		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
Frame-shit	ENST00000589265	ENST00000053867		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
Frame-shit	ENST00000589265	ENST00000589265		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
5CDS-intron	ENST00000589265	ENST00000589923		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-3CDS	ENST00000589923	ENST00000053867		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-3CDS	ENST00000589923	ENST00000589265		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-intron	ENST00000589923	ENST00000589923		ChiTaRS3.1			AU100550	GRN	chr17	42429016	+	GRN	chr17	42426550	+
intron-intron	ENST00000397817	ENST00000354989		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000360031		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000376652		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000433259		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000485936		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000354989		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000360031		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000376652		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000433259		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000485936		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000354989		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000360031		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000376652		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000433259		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000485936		ChiTaRS3.1			EL584050	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000377795	ENST00000353334		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000377795	ENST00000524315		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000353334	ENST00000353334		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000353334	ENST00000524315		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000524315	ENST00000353334		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000524315	ENST00000524315		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000009530	ENST00000353334		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000009530	ENST00000524315		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			AW974280	CD74	chr5	149781293	-	CD74	chr5	149781208	+
In-frame	ENST00000525566	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000525566	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000525566	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000429002	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000429002	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000429002	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000503506	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000503506	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000503506	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000526691	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000526691	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000526691	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000388854	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000388854	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000388854	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000354940	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000354940	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000354940	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000526390	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000526390	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000526390	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000529546	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000529546	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000529546	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000540716	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000540716	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000540716	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000524698	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000524698	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000524698	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000542918	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000542918	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000542918	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000378070	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000378070	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000378070	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000397736	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000397736	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000397736	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000427956	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000427956	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000427956	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
In-frame	ENST00000526950	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000526950	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5CDS-intron	ENST00000526950	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
intron-3CDS	ENST00000526006	ENST00000426256		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
intron-intron	ENST00000526006	ENST00000326132		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
intron-intron	ENST00000526006	ENST00000266252		ChiTaRS3.1			BP242040	TXNRD1	chr12	104714927	+	RNF185	chr22	31556165	+
5UTR-3CDS	ENST00000344063	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000344063	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000344063	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000344063	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000431533	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000431533	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000431533	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000431533	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000428193	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000428193	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000428193	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000428193	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000558815	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000558815	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000558815	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000558815	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000560583	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000560583	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560583	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560583	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000560055	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000560055	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560055	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560055	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000559463	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000559463	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000559463	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000559463	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000558131	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000558131	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558131	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558131	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000558752	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000558752	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558752	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558752	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000458349	ENST00000229270		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000458349	ENST00000396705		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000458349	ENST00000488464		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000458349	ENST00000535434		ChiTaRS3.1			BC004230	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
3UTR-3UTR	ENST00000397256	ENST00000397256		ChiTaRS3.1			AA557690	ARPC4-TTLL3	chr3	9876974	+	ARPC4-TTLL3	chr3	9877062	-
intron-3UTR	ENST00000355904	ENST00000355904		ChiTaRS3.1			BE005000	GTF2E2	chr8	30436253	-	GTF2E2	chr8	30436105	+
intron-intron	ENST00000355904	ENST00000522833		ChiTaRS3.1			BE005000	GTF2E2	chr8	30436253	-	GTF2E2	chr8	30436105	+
intron-3UTR	ENST00000522833	ENST00000355904		ChiTaRS3.1			BE005000	GTF2E2	chr8	30436253	-	GTF2E2	chr8	30436105	+
intron-intron	ENST00000522833	ENST00000522833		ChiTaRS3.1			BE005000	GTF2E2	chr8	30436253	-	GTF2E2	chr8	30436105	+
intron-3UTR	ENST00000439174	ENST00000439174		ChiTaRS3.1			AA748130	GNA13	chr17	63007308	-	GNA13	chr17	63007439	+
intron-intron	ENST00000439174	ENST00000541118		ChiTaRS3.1			AA748130	GNA13	chr17	63007308	-	GNA13	chr17	63007439	+
intron-3UTR	ENST00000541118	ENST00000439174		ChiTaRS3.1			AA748130	GNA13	chr17	63007308	-	GNA13	chr17	63007439	+
intron-intron	ENST00000541118	ENST00000541118		ChiTaRS3.1			AA748130	GNA13	chr17	63007308	-	GNA13	chr17	63007439	+
intron-intron	ENST00000373886	ENST00000373886		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000373886	ENST00000263103		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000373886	ENST00000476684		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000263103	ENST00000373886		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000263103	ENST00000263103		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000263103	ENST00000476684		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000476684	ENST00000373886		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000476684	ENST00000263103		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000476684	ENST00000476684		ChiTaRS3.1			BF752060	BICC1	chr10	60472706	-	BICC1	chr10	60472756	+
intron-intron	ENST00000361926	ENST00000361926		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000361926	ENST00000421050		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000361926	ENST00000582060		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000421050	ENST00000361926		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000421050	ENST00000421050		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000421050	ENST00000582060		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000582060	ENST00000361926		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000582060	ENST00000421050		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-intron	ENST00000582060	ENST00000582060		ChiTaRS3.1			AL601490	ARHGEF15	chr17	8220478	+	ARHGEF15	chr17	8218630	+
intron-3CDS	ENST00000411780	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000411780	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000411780	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397137	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397137	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397137	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000373537	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000373537	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000373537	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000414542	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000414542	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000414542	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397135	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397135	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397135	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397134	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397134	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397134	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397131	ENST00000236957		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397131	ENST00000392221		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
intron-3CDS	ENST00000397131	ENST00000392222		ChiTaRS3.1			BE783880	BLCAP	chr20	36151714	-	EEF1B2	chr2	207026773	+
In-frame	ENST00000369085	ENST00000369085		ChiTaRS3.1			Z24890	BAG3	chr10	121436167	+	BAG3	chr10	121431786	+
3UTR-3UTR	ENST00000533507	ENST00000329654		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
3UTR-intron	ENST00000533507	ENST00000371049		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
3UTR-3UTR	ENST00000533507	ENST00000423207		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
3UTR-intron	ENST00000533507	ENST00000371048		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
3UTR-3UTR	ENST00000533507	ENST00000371045		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
3UTR-intron	ENST00000533507	ENST00000480109		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
5CDS-3UTR	ENST00000263774	ENST00000329654		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
5CDS-intron	ENST00000263774	ENST00000371049		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
5CDS-3UTR	ENST00000263774	ENST00000423207		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
5CDS-intron	ENST00000263774	ENST00000371048		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
5CDS-3UTR	ENST00000263774	ENST00000371045		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
5CDS-intron	ENST00000263774	ENST00000480109		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000529276	ENST00000329654		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000529276	ENST00000371049		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000529276	ENST00000423207		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000529276	ENST00000371048		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000529276	ENST00000371045		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000529276	ENST00000480109		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000528192	ENST00000329654		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000528192	ENST00000371049		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000528192	ENST00000423207		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000528192	ENST00000371048		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000528192	ENST00000371045		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000528192	ENST00000480109		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000534208	ENST00000329654		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000534208	ENST00000371049		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000534208	ENST00000423207		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000534208	ENST00000371048		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000534208	ENST00000371045		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000534208	ENST00000480109		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000534716	ENST00000329654		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000534716	ENST00000371049		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000534716	ENST00000423207		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000534716	ENST00000371048		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-3UTR	ENST00000534716	ENST00000371045		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000534716	ENST00000480109		ChiTaRS3.1			BQ352220	NDUFS3	chr11	47605919	+	PDE4B	chr1	66839015	-
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ207764	ETV6	chr12	12024122	+	RUNX1	chr21	36306767	-
3UTR-intron	ENST00000302068	ENST00000302068		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
3UTR-intron	ENST00000302068	ENST00000509493		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
3UTR-intron	ENST00000302068	ENST00000502545		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000509493	ENST00000302068		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000509493	ENST00000509493		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000509493	ENST00000502545		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000502545	ENST00000302068		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000502545	ENST00000509493		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000502545	ENST00000502545		ChiTaRS3.1			AW970840	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000299338	ENST00000550404		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000299338	ENST00000261739		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000561064	ENST00000550404		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000561064	ENST00000261739		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000558594	ENST00000550404		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000558594	ENST00000261739		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000560246	ENST00000550404		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000560246	ENST00000261739		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000558862	ENST00000550404		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000558862	ENST00000261739		ChiTaRS3.1			BE047720	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
3UTR-intron	ENST00000370179	ENST00000384994		ChiTaRS3.1			BF087800	PPDPF	chr20	62153307	+	NEAT1	chr11	65193529	-
intron-intron	ENST00000370177	ENST00000384994		ChiTaRS3.1			BF087800	PPDPF	chr20	62153307	+	NEAT1	chr11	65193529	-
5CDS-intron	ENST00000473620	ENST00000384994		ChiTaRS3.1			BF087800	PPDPF	chr20	62153307	+	NEAT1	chr11	65193529	-
intron-intron	ENST00000175091	ENST00000427245		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-intron	ENST00000175091	ENST00000525682		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-intron	ENST00000175091	ENST00000236342		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-intron	ENST00000175091	ENST00000526219		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-intron	ENST00000175091	ENST00000374185		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-intron	ENST00000175091	ENST00000360009		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-intron	ENST00000175091	ENST00000531955		ChiTaRS3.1			CV321690	LAPTM4A	chr2	20247869	+	DHDDS	chr1	26765919	+
intron-3CDS	ENST00000262384	ENST00000397063		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000262384	ENST00000397062		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000262384	ENST00000446151		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000262384	ENST00000464747		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-intron	ENST00000262384	ENST00000423513		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000565423	ENST00000397063		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000565423	ENST00000397062		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000565423	ENST00000446151		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-3CDS	ENST00000565423	ENST00000464747		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
intron-intron	ENST00000565423	ENST00000423513		ChiTaRS3.1			BI037770	N4BP1	chr16	48595865	+	NFE2L2	chr2	178096166	-
3UTR-intron	ENST00000405315	ENST00000546961		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000405315	ENST00000550891		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000405315	ENST00000354534		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000405315	ENST00000545061		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000407032	ENST00000546961		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000407032	ENST00000550891		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000407032	ENST00000354534		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000407032	ENST00000545061		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000485798	ENST00000546961		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000485798	ENST00000550891		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000485798	ENST00000354534		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000485798	ENST00000545061		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000263273	ENST00000546961		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000263273	ENST00000550891		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000263273	ENST00000354534		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
3UTR-intron	ENST00000263273	ENST00000545061		ChiTaRS3.1			BE818180	NUCB1	chr19	49425893	+	SCN8A	chr12	52201171	-
intron-intron	ENST00000339374	ENST00000564777		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000339374	ENST00000316900		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000339374	ENST00000316911		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000339374	ENST00000561656		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000339374	ENST00000541638		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000339374	ENST00000359750		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000555177	ENST00000564777		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000555177	ENST00000316900		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000555177	ENST00000316911		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000555177	ENST00000561656		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000555177	ENST00000541638		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000555177	ENST00000359750		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000382985	ENST00000564777		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000382985	ENST00000316900		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000382985	ENST00000316911		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000382985	ENST00000561656		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000382985	ENST00000541638		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000382985	ENST00000359750		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000556670	ENST00000564777		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000556670	ENST00000316900		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000556670	ENST00000316911		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000556670	ENST00000561656		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000556670	ENST00000541638		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
intron-intron	ENST00000556670	ENST00000359750		ChiTaRS3.1			BF922030	METTL17	chr14	21464209	+	STOML1	chr15	74279529	-
In-frame	ENST00000238571	ENST00000392957		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000238571	ENST00000442129		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000238571	ENST00000411471		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
5CDS-3UTR	ENST00000238571	ENST00000476059		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000325680	ENST00000392957		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000325680	ENST00000442129		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
In-frame	ENST00000325680	ENST00000411471		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
5CDS-3UTR	ENST00000325680	ENST00000476059		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000552421	ENST00000392957		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000552421	ENST00000442129		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000552421	ENST00000411471		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3UTR	ENST00000552421	ENST00000476059		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000546901	ENST00000392957		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000546901	ENST00000442129		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3CDS	ENST00000546901	ENST00000411471		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3UTR	ENST00000546901	ENST00000476059		ChiTaRS3.1			AK091050	YLPM1	chr14	75265473	+	EPHB6	chr7	142568562	+
intron-3UTR	ENST00000372390	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372390	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372390	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372397	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372397	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372397	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000315660	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000315660	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000315660	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372383	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372383	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372383	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372384	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372384	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372384	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372382	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372382	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000372382	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000506081	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000506081	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000506081	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000514426	ENST00000369939		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000514426	ENST00000529753		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
intron-3UTR	ENST00000514426	ENST00000369938		ChiTaRS3.1			BP394700	TSC22D3	chrX	106960264	+	KIAA1324	chr1	109745677	+
5CDS-intron	ENST00000263094	ENST00000247956		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
5CDS-intron	ENST00000263094	ENST00000360385		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
5CDS-intron	ENST00000433129	ENST00000247956		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
5CDS-intron	ENST00000433129	ENST00000360385		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
5CDS-intron	ENST00000435683	ENST00000247956		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
5CDS-intron	ENST00000435683	ENST00000360385		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
intron-intron	ENST00000533574	ENST00000247956		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
intron-intron	ENST00000533574	ENST00000360385		ChiTaRS3.1			BI027470	ABCA7	chr19	1043731	-	ZNF317	chr19	9259193	-
intron-3CDS	ENST00000335244	ENST00000394077		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000335244	ENST00000495401		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000335244	ENST00000469605		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000450886	ENST00000394077		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000450886	ENST00000495401		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000450886	ENST00000469605		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000521967	ENST00000394077		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000521967	ENST00000495401		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-3CDS	ENST00000521967	ENST00000469605		ChiTaRS3.1			AK122630	SLC36A2	chr5	150695752	-	RPL24	chr3	101401710	-
intron-intron	ENST00000518836	ENST00000518836		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000518836	ENST00000313708		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000518836	ENST00000380654		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000518836	ENST00000517373		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000313708	ENST00000518836		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000313708	ENST00000313708		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000313708	ENST00000380654		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000313708	ENST00000517373		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000380654	ENST00000518836		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000380654	ENST00000313708		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000380654	ENST00000380654		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000380654	ENST00000517373		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000517373	ENST00000518836		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000517373	ENST00000313708		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000517373	ENST00000380654		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-intron	ENST00000517373	ENST00000517373		ChiTaRS3.1			AA768060	EBF1	chr5	158484739	-	EBF1	chr5	158484478	+
intron-3CDS	ENST00000262384	ENST00000262384		ChiTaRS3.1			AA906470	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000262384	ENST00000565423		ChiTaRS3.1			AA906470	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-3CDS	ENST00000565423	ENST00000262384		ChiTaRS3.1			AA906470	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000565423	ENST00000565423		ChiTaRS3.1			AA906470	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-3CDS	ENST00000300060	ENST00000300060		ChiTaRS3.1			CB157580	ANPEP	chr15	90347130	+	ANPEP	chr15	90344722	-
intron-5UTR	ENST00000300060	ENST00000558177		ChiTaRS3.1			CB157580	ANPEP	chr15	90347130	+	ANPEP	chr15	90344722	-
intron-3CDS	ENST00000558177	ENST00000300060		ChiTaRS3.1			CB157580	ANPEP	chr15	90347130	+	ANPEP	chr15	90344722	-
intron-5UTR	ENST00000558177	ENST00000558177		ChiTaRS3.1			CB157580	ANPEP	chr15	90347130	+	ANPEP	chr15	90344722	-
intron-3UTR	ENST00000340666	ENST00000395319		ChiTaRS3.1			AI193580	SYN1	chrX	47446055	-	ALDOC	chr17	26900382	+
intron-3UTR	ENST00000340666	ENST00000395321		ChiTaRS3.1			AI193580	SYN1	chrX	47446055	-	ALDOC	chr17	26900382	+
intron-3UTR	ENST00000340666	ENST00000226253		ChiTaRS3.1			AI193580	SYN1	chrX	47446055	-	ALDOC	chr17	26900382	+
intron-3UTR	ENST00000295987	ENST00000395319		ChiTaRS3.1			AI193580	SYN1	chrX	47446055	-	ALDOC	chr17	26900382	+
intron-3UTR	ENST00000295987	ENST00000395321		ChiTaRS3.1			AI193580	SYN1	chrX	47446055	-	ALDOC	chr17	26900382	+
intron-3UTR	ENST00000295987	ENST00000226253		ChiTaRS3.1			AI193580	SYN1	chrX	47446055	-	ALDOC	chr17	26900382	+
intron-intron	ENST00000565698	ENST00000560302		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000565698	ENST00000394518		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000565698	ENST00000361243		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-3UTR	ENST00000565698	ENST00000560579		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-3UTR	ENST00000565698	ENST00000394510		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000304658	ENST00000560302		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000304658	ENST00000394518		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000304658	ENST00000361243		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-3UTR	ENST00000304658	ENST00000560579		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-3UTR	ENST00000304658	ENST00000394510		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000561488	ENST00000560302		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000561488	ENST00000394518		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000561488	ENST00000361243		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-3UTR	ENST00000561488	ENST00000560579		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-3UTR	ENST00000561488	ENST00000394510		ChiTaRS3.1			BE816280	XPO6	chr16	28213277	-	AKAP13	chr15	86266484	-
intron-intron	ENST00000524717	ENST00000524717		ChiTaRS3.1			AA525350	MAML2	chr11	95955074	-	MAML2	chr11	95954921	+
intron-3CDS	ENST00000417478	ENST00000457913		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000417478	ENST00000277225		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000417478	ENST00000441147		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000417478	ENST00000542028		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000417478	ENST00000497489		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-3CDS	ENST00000381006	ENST00000457913		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-3CDS	ENST00000381006	ENST00000277225		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-3CDS	ENST00000381006	ENST00000441147		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-intron	ENST00000381006	ENST00000542028		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-intron	ENST00000381006	ENST00000497489		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-3CDS	ENST00000226328	ENST00000457913		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-3CDS	ENST00000226328	ENST00000277225		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-3CDS	ENST00000226328	ENST00000441147		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-intron	ENST00000226328	ENST00000542028		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5UTR-intron	ENST00000226328	ENST00000497489		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000536664	ENST00000457913		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000536664	ENST00000277225		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000536664	ENST00000441147		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000536664	ENST00000542028		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000536664	ENST00000497489		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000502653	ENST00000457913		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000502653	ENST00000277225		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000502653	ENST00000441147		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000502653	ENST00000542028		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000502653	ENST00000497489		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000512331	ENST00000457913		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000512331	ENST00000277225		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-3CDS	ENST00000512331	ENST00000441147		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000512331	ENST00000542028		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
intron-intron	ENST00000512331	ENST00000497489		ChiTaRS3.1			M78270	RUFY3	chr4	71587988	+	ZNF462	chr9	109691565	-
5CDS-5UTR	ENST00000344921	ENST00000344921		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000344921	ENST00000263121		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000344921	ENST00000407422		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000344921	ENST00000407082		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000263121	ENST00000344921		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000263121	ENST00000263121		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000263121	ENST00000407422		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000263121	ENST00000407082		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407422	ENST00000344921		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407422	ENST00000263121		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407422	ENST00000407422		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407422	ENST00000407082		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407082	ENST00000344921		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407082	ENST00000263121		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407082	ENST00000407422		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-5UTR	ENST00000407082	ENST00000407082		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
5CDS-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
intron-5UTR	ENST00000477836	ENST00000344921		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
intron-5UTR	ENST00000477836	ENST00000263121		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
intron-5UTR	ENST00000477836	ENST00000407422		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
intron-5UTR	ENST00000477836	ENST00000407082		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			CN272300	SMARCB1	chr22	24167564	+	SMARCB1	chr22	24129259	+
intron-3CDS	ENST00000380394	ENST00000335681		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380394	ENST00000542504		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000380394	ENST00000486017		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000498815	ENST00000335681		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000498815	ENST00000542504		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000498815	ENST00000486017		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380384	ENST00000335681		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380384	ENST00000542504		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000380384	ENST00000486017		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000315377	ENST00000335681		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000315377	ENST00000542504		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000315377	ENST00000486017		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380381	ENST00000335681		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380381	ENST00000542504		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000380381	ENST00000486017		ChiTaRS3.1			AW973590	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000325006	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000325006	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000446544	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000446544	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000531335	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000531335	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000474594	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000474594	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000446212	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000446212	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000490911	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000490911	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000472554	ENST00000262033		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000537473		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000414274		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000436399		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000448157		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000472554	ENST00000456859		ChiTaRS3.1			AW793520	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000356316	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000356316	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000356316	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000318023	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000318023	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000318023	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000357568	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000357568	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000357568	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000349748	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000349748	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000349748	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397163	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397163	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397163	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397200	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397200	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397200	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000337571	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000337571	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000337571	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000569136	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000569136	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000569136	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000561817	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000561817	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000561817	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397204	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397204	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000397204	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000562199	ENST00000284268		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000562199	ENST00000535119		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-intron	ENST00000562199	ENST00000503939		ChiTaRS3.1			BF901090	CAPN3	chr15	42682065	-	ANKH	chr5	14711764	-
intron-3CDS	ENST00000329138	ENST00000431843		ChiTaRS3.1			AW139250	HGS	chr17	79657206	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000397632		ChiTaRS3.1			AW139250	HGS	chr17	79657206	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000332725		ChiTaRS3.1			AW139250	HGS	chr17	79657206	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000531205		ChiTaRS3.1			AW139250	HGS	chr17	79657206	-	SIGIRR	chr11	407854	+
intron-3CDS	ENST00000329138	ENST00000382520		ChiTaRS3.1			AW139250	HGS	chr17	79657206	-	SIGIRR	chr11	407854	+
intron-5UTR	ENST00000329138	ENST00000529486		ChiTaRS3.1			AW139250	HGS	chr17	79657206	-	SIGIRR	chr11	407854	+
3UTR-intron	ENST00000282541	ENST00000396981		ChiTaRS3.1			BF849090	GPD1L	chr3	32210011	-	UBE2G1	chr17	4268537	-
3UTR-intron	ENST00000282541	ENST00000572484		ChiTaRS3.1			BF849090	GPD1L	chr3	32210011	-	UBE2G1	chr17	4268537	-
intron-3UTR	ENST00000544564	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000544564	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000544564	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000544564	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000541571	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000541571	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000541571	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000541571	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000535424	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000535424	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000535424	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000535424	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378799	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378799	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378799	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000378799	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538565	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538565	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538565	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000538565	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000606369	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000606369	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000606369	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000606369	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000329908	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000329908	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000329908	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000329908	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538850	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538850	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000538850	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000538850	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378798	ENST00000313010		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378798	ENST00000393399		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-3UTR	ENST00000378798	ENST00000535099		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
intron-intron	ENST00000378798	ENST00000525772		ChiTaRS3.1			BE767690	IST1	chr16	71957804	-	PRCP	chr11	82535904	-
In-frame	ENST00000372771	ENST00000397332		ChiTaRS3.1			X58480	RLF	chr1	40627309	+	MYCL	chr1	40367118	-
5CDS-5UTR	ENST00000372771	ENST00000372816		ChiTaRS3.1			X58480	RLF	chr1	40627309	+	MYCL	chr1	40367118	-
5CDS-5UTR	ENST00000372771	ENST00000372815		ChiTaRS3.1			X58480	RLF	chr1	40627309	+	MYCL	chr1	40367118	-
5CDS-5UTR	ENST00000372771	ENST00000429311		ChiTaRS3.1			X58480	RLF	chr1	40627309	+	MYCL	chr1	40367118	-
intron-3CDS	ENST00000380913	ENST00000361337		ChiTaRS3.1			BG008680	SHROOM2	chrX	9765010	-	TOP1	chr20	39750756	+
intron-3CDS	ENST00000493668	ENST00000361337		ChiTaRS3.1			BG008680	SHROOM2	chrX	9765010	-	TOP1	chr20	39750756	+
intron-3CDS	ENST00000418909	ENST00000361337		ChiTaRS3.1			BG008680	SHROOM2	chrX	9765010	-	TOP1	chr20	39750756	+
3UTR-intron	ENST00000233893	ENST00000452346		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
3UTR-intron	ENST00000233893	ENST00000419127		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
intron-intron	ENST00000409729	ENST00000452346		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
intron-intron	ENST00000409729	ENST00000419127		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
5CDS-intron	ENST00000409468	ENST00000452346		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
5CDS-intron	ENST00000409468	ENST00000419127		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
5CDS-intron	ENST00000465573	ENST00000452346		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
5CDS-intron	ENST00000465573	ENST00000419127		ChiTaRS3.1			DN994272	HSPE1	chr2	198368107	+	TMPRSS7	chr3	111798413	-
intron-3CDS	ENST00000529163	ENST00000398022		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000529163	ENST00000217315		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000394920	ENST00000398022		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000394920	ENST00000217315		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000527914	ENST00000398022		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000527914	ENST00000217315		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000262584	ENST00000398022		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000262584	ENST00000217315		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000528957	ENST00000398022		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
intron-3CDS	ENST00000528957	ENST00000217315		ChiTaRS3.1			CV366110	RPL8	chr8	146015323	-	TM9SF4	chr20	30729302	+
Frame-shit	ENST00000401695	ENST00000598742		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
Frame-shit	ENST00000401695	ENST00000221975		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
Frame-shit	ENST00000401695	ENST00000593863		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
In-frame	ENST00000407193	ENST00000598742		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
In-frame	ENST00000407193	ENST00000221975		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
In-frame	ENST00000407193	ENST00000593863		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
In-frame	ENST00000312037	ENST00000598742		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
In-frame	ENST00000312037	ENST00000221975		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
In-frame	ENST00000312037	ENST00000593863		ChiTaRS3.1			BU602070	RPS14	chr5	149826368	-	RPS19	chr19	42373271	+
3UTR-3UTR	ENST00000261267	ENST00000591790		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000504904		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000292069		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000342634		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-intron	ENST00000261267	ENST00000589652		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000591790		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000504904		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000292069		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000342634		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-intron	ENST00000549690	ENST00000589652		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000591790		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000504904		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000292069		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000342634		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-intron	ENST00000548839	ENST00000589652		ChiTaRS3.1			AW770550	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000256935	ENST00000275532		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000256935	ENST00000443322		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000256935	ENST00000510829		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000256935	ENST00000380828		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000256935	ENST00000451741		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-3UTR	ENST00000540750	ENST00000275532		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000540750	ENST00000443322		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000540750	ENST00000510829		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000540750	ENST00000380828		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000540750	ENST00000451741		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-3UTR	ENST00000520908	ENST00000275532		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000520908	ENST00000443322		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000520908	ENST00000510829		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000520908	ENST00000380828		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000520908	ENST00000451741		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-3UTR	ENST00000523351	ENST00000275532		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000523351	ENST00000443322		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000523351	ENST00000510829		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000523351	ENST00000380828		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-intron	ENST00000523351	ENST00000451741		ChiTaRS3.1			BQ371250	DOCK2	chr5	169485672	-	KCTD7	chr7	66105861	+
intron-3CDS	ENST00000439040	ENST00000439040		ChiTaRS3.1			BQ308080	ATP13A3	chr3	194150449	-	ATP13A3	chr3	194134507	+
intron-3CDS	ENST00000439040	ENST00000256031		ChiTaRS3.1			BQ308080	ATP13A3	chr3	194150449	-	ATP13A3	chr3	194134507	+
intron-3CDS	ENST00000256031	ENST00000439040		ChiTaRS3.1			BQ308080	ATP13A3	chr3	194150449	-	ATP13A3	chr3	194134507	+
intron-3CDS	ENST00000256031	ENST00000256031		ChiTaRS3.1			BQ308080	ATP13A3	chr3	194150449	-	ATP13A3	chr3	194134507	+
Frame-shit	ENST00000508803	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000508803	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000508803	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000508803	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000508803	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382892	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382892	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382892	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382892	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382892	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382891	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382891	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382891	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382891	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382891	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382895	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382895	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382895	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000382895	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000382895	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000482415	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000482415	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000482415	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000482415	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000482415	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000382888	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000382888	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000382888	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000382888	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000382888	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000514045	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000514045	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000514045	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000514045	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000514045	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000436793	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000436793	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000436793	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-3CDS	ENST00000436793	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000436793	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000420906	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000420906	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000420906	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000420906	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000420906	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000503128	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000503128	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000503128	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000503128	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000503128	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000398261	ENST00000508803		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000398261	ENST00000382892		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000398261	ENST00000382891		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
Frame-shit	ENST00000398261	ENST00000382895		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000482415		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000382888		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000514045		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000436793		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000420906		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000503128		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
5CDS-intron	ENST00000398261	ENST00000398261		ChiTaRS3.1			BE079790	WHSC1	chr4	1919940	-	WHSC1	chr4	1902816	+
intron-intron	ENST00000181796	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000181796	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000181796	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000181796	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378470	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378470	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378470	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378470	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000468747	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000468747	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000468747	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000468747	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378467	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378467	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378467	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378467	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378465	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378465	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378465	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378465	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378458	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378458	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378458	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378458	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000478076	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000478076	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000478076	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000478076	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378462	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378462	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378462	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000378462	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000496330	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000496330	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000496330	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000496330	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000479731	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000479731	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000479731	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000479731	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000471815	ENST00000378319		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000471815	ENST00000357596		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000471815	ENST00000488958		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000471815	ENST00000460489		ChiTaRS3.1			BE937160	FAM107B	chr10	14606556	-	PHF11	chr13	50096069	+
intron-intron	ENST00000375765	ENST00000472729		ChiTaRS3.1			DB297590	DIRAS2	chr9	93375818	+	COMMD1	chr2	62302614	-
intron-intron	ENST00000375765	ENST00000311832		ChiTaRS3.1			DB297590	DIRAS2	chr9	93375818	+	COMMD1	chr2	62302614	-
intron-intron	ENST00000375765	ENST00000538736		ChiTaRS3.1			DB297590	DIRAS2	chr9	93375818	+	COMMD1	chr2	62302614	-
3UTR-intron	ENST00000602662	ENST00000602662		ChiTaRS3.1			CV569320	MINOS1-NBL1	chr1	19984471	-	MINOS1-NBL1	chr1	19984567	+
intron-intron	ENST00000251775	ENST00000258484		ChiTaRS3.1			BE716950	SNX4	chr3	125165847	+	EPC2	chr2	149528957	-
intron-intron	ENST00000251775	ENST00000409654		ChiTaRS3.1			BE716950	SNX4	chr3	125165847	+	EPC2	chr2	149528957	-
intron-intron	ENST00000536067	ENST00000258484		ChiTaRS3.1			BE716950	SNX4	chr3	125165847	+	EPC2	chr2	149528957	-
intron-intron	ENST00000536067	ENST00000409654		ChiTaRS3.1			BE716950	SNX4	chr3	125165847	+	EPC2	chr2	149528957	-
intron-intron	ENST00000473417	ENST00000258484		ChiTaRS3.1			BE716950	SNX4	chr3	125165847	+	EPC2	chr2	149528957	-
intron-intron	ENST00000473417	ENST00000409654		ChiTaRS3.1			BE716950	SNX4	chr3	125165847	+	EPC2	chr2	149528957	-
intron-3CDS	ENST00000435120	ENST00000606098		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000435120	ENST00000285083		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000435120	ENST00000605932		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000435120	ENST00000435829		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000435120	ENST00000544043		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-intron	ENST00000435120	ENST00000607329		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000203630	ENST00000606098		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000203630	ENST00000285083		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000203630	ENST00000605932		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000203630	ENST00000435829		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000203630	ENST00000544043		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-intron	ENST00000203630	ENST00000607329		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000542154	ENST00000606098		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000542154	ENST00000285083		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000542154	ENST00000605932		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000542154	ENST00000435829		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000542154	ENST00000544043		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-intron	ENST00000542154	ENST00000607329		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000539187	ENST00000606098		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000539187	ENST00000285083		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000539187	ENST00000605932		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000539187	ENST00000435829		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000539187	ENST00000544043		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-intron	ENST00000539187	ENST00000607329		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000564181	ENST00000606098		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000564181	ENST00000285083		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000564181	ENST00000605932		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000564181	ENST00000435829		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-3CDS	ENST00000564181	ENST00000544043		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-intron	ENST00000564181	ENST00000607329		ChiTaRS3.1			BM968310	MLF2	chr12	6857248	+	OXNAD1	chr3	16344931	+
intron-intron	ENST00000373913	ENST00000373913		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373913	ENST00000401952		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373913	ENST00000373907		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373913	ENST00000339266		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373913	ENST00000475894		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373913	ENST00000340491		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000401952	ENST00000373913		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000401952	ENST00000401952		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000401952	ENST00000373907		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000401952	ENST00000339266		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000401952	ENST00000475894		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000401952	ENST00000340491		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373907	ENST00000373913		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373907	ENST00000401952		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373907	ENST00000373907		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373907	ENST00000339266		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373907	ENST00000475894		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000373907	ENST00000340491		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000339266	ENST00000373913		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000339266	ENST00000401952		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000339266	ENST00000373907		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000339266	ENST00000339266		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000339266	ENST00000475894		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000339266	ENST00000340491		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000475894	ENST00000373913		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000475894	ENST00000401952		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000475894	ENST00000373907		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000475894	ENST00000339266		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000475894	ENST00000475894		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000475894	ENST00000340491		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000340491	ENST00000373913		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000340491	ENST00000401952		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000340491	ENST00000373907		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000340491	ENST00000339266		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000340491	ENST00000475894		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000340491	ENST00000340491		ChiTaRS3.1			BM683270	DLGAP4	chr20	35146400	+	DLGAP4	chr20	35138453	+
intron-intron	ENST00000283415	ENST00000393240		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000283415	ENST00000261205		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000283415	ENST00000457153		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000283415	ENST00000552744		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000283415	ENST00000549454		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000503252	ENST00000393240		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000503252	ENST00000261205		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000503252	ENST00000457153		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000503252	ENST00000552744		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000503252	ENST00000549454		ChiTaRS3.1			AV731790	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000371419	ENST00000371419		ChiTaRS3.1			AV748690	PFDN4	chr20	52834106	+	PFDN4	chr20	52829676	+
intron-intron	ENST00000371419	ENST00000487129		ChiTaRS3.1			AV748690	PFDN4	chr20	52834106	+	PFDN4	chr20	52829676	+
intron-intron	ENST00000487129	ENST00000371419		ChiTaRS3.1			AV748690	PFDN4	chr20	52834106	+	PFDN4	chr20	52829676	+
intron-intron	ENST00000487129	ENST00000487129		ChiTaRS3.1			AV748690	PFDN4	chr20	52834106	+	PFDN4	chr20	52829676	+
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			AW204690	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000475243	ENST00000378707		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000359836		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000541735		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000343523		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000378677		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000357033		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000474231		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000378723		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000378702		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000361471		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000378680		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000288447		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000475243	ENST00000445312		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000378707		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000359836		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000541735		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000343523		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000378677		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000357033		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000474231		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000378723		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000378702		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000361471		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000378680		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000288447		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000395802	ENST00000445312		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000378707		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000359836		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000541735		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000343523		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000378677		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000357033		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000474231		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000378723		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000378702		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000361471		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000378680		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000288447		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
intron-intron	ENST00000265619	ENST00000445312		ChiTaRS3.1			AW993740	VAPB	chr20	56979533	+	DMD	chrX	31213863	-
3UTR-3UTR	ENST00000369066	ENST00000223357		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
3UTR-intron	ENST00000369066	ENST00000454218		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
3UTR-3UTR	ENST00000369066	ENST00000450684		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
intron-3UTR	ENST00000535438	ENST00000223357		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
intron-intron	ENST00000535438	ENST00000454218		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
intron-3UTR	ENST00000535438	ENST00000450684		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
intron-3UTR	ENST00000487681	ENST00000223357		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
intron-intron	ENST00000487681	ENST00000454218		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
intron-3UTR	ENST00000487681	ENST00000450684		ChiTaRS3.1			AA528240	AIM1	chr6	107018008	-	AEBP1	chr7	44153942	-
3UTR-intron	ENST00000356093	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000356093	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000356093	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000398863	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000398863	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000398863	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000343067	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000343067	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000343067	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000349460	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000349460	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000349460	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373800	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373800	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373800	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000347529	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000347529	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000347529	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000373798	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000373798	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000373798	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373797	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373797	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-intron	ENST00000373797	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000460378	ENST00000311862		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000460378	ENST00000533605		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
3UTR-intron	ENST00000460378	ENST00000525955		ChiTaRS3.1			AI133070	EPB41	chr1	29446442	-	PRG2	chr11	57175722	-
intron-3UTR	ENST00000378746	ENST00000262646		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378746	ENST00000531289		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378746	ENST00000529579		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378746	ENST00000530071		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3UTR	ENST00000378735	ENST00000262646		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378735	ENST00000531289		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378735	ENST00000529579		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378735	ENST00000530071		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3UTR	ENST00000403231	ENST00000262646		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000403231	ENST00000531289		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000403231	ENST00000529579		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000403231	ENST00000530071		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3UTR	ENST00000487055	ENST00000262646		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000487055	ENST00000531289		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000487055	ENST00000529579		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000487055	ENST00000530071		ChiTaRS3.1			AW998960	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000376462	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000324589		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000349752		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000406653		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000356174		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000420311		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000486564		ChiTaRS3.1			CV383660	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
5CDS-3UTR	ENST00000261973	ENST00000261973		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000261973	ENST00000540173		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000261973	ENST00000527432		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000261973	ENST00000525321		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000261973	ENST00000526754		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000261973	ENST00000532483		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000540173	ENST00000261973		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000540173	ENST00000540173		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000540173	ENST00000527432		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000540173	ENST00000525321		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000540173	ENST00000526754		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000540173	ENST00000532483		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000527432	ENST00000261973		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000527432	ENST00000540173		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000527432	ENST00000527432		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000527432	ENST00000525321		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000527432	ENST00000526754		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000527432	ENST00000532483		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000525321	ENST00000261973		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000525321	ENST00000540173		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000525321	ENST00000527432		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000525321	ENST00000525321		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000525321	ENST00000526754		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000525321	ENST00000532483		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000526754	ENST00000261973		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000526754	ENST00000540173		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-3UTR	ENST00000526754	ENST00000527432		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000526754	ENST00000525321		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000526754	ENST00000526754		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
5CDS-intron	ENST00000526754	ENST00000532483		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-3UTR	ENST00000532483	ENST00000261973		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-intron	ENST00000532483	ENST00000540173		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-3UTR	ENST00000532483	ENST00000527432		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-intron	ENST00000532483	ENST00000525321		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-intron	ENST00000532483	ENST00000526754		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-intron	ENST00000532483	ENST00000532483		ChiTaRS3.1			BE503330	RBM25	chr14	73566127	-	RBM25	chr14	73586937	-
intron-intron	ENST00000310614	ENST00000371470		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000310614	ENST00000371466		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000310614	ENST00000462941		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000535529	ENST00000371470		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000535529	ENST00000371466		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000535529	ENST00000462941		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000411840	ENST00000371470		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000411840	ENST00000371466		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000411840	ENST00000462941		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000398483	ENST00000371470		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000398483	ENST00000371466		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000398483	ENST00000462941		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000542303	ENST00000371470		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000542303	ENST00000371466		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000542303	ENST00000462941		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000314282	ENST00000371470		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000314282	ENST00000371466		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
intron-intron	ENST00000314282	ENST00000462941		ChiTaRS3.1			BX109950	MRPL48	chr11	73569262	+	MAGOH	chr1	53696039	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW858530	MALAT1	chr11	65266792	+	MALAT1	chr11	65266798	-
intron-3UTR	ENST00000446326	ENST00000371269		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-intron	ENST00000446326	ENST00000537443		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-intron	ENST00000446326	ENST00000535035		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
3UTR-3UTR	ENST00000289816	ENST00000371269		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
3UTR-intron	ENST00000289816	ENST00000537443		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
3UTR-intron	ENST00000289816	ENST00000535035		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-3UTR	ENST00000568064	ENST00000371269		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-intron	ENST00000568064	ENST00000537443		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-intron	ENST00000568064	ENST00000535035		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-3UTR	ENST00000443381	ENST00000371269		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-intron	ENST00000443381	ENST00000537443		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
intron-intron	ENST00000443381	ENST00000535035		ChiTaRS3.1			BF918420	ZNF276	chr16	89806615	-	DHCR24	chr1	55316392	+
3UTR-3UTR	ENST00000216492	ENST00000310137		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-3UTR	ENST00000216492	ENST00000393979		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000216492	ENST00000409372		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000216492	ENST00000443702		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000216492	ENST00000409738		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000216492	ENST00000461478		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-3UTR	ENST00000334654	ENST00000310137		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-3UTR	ENST00000334654	ENST00000393979		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000334654	ENST00000409372		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000334654	ENST00000443702		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000334654	ENST00000409738		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-intron	ENST00000334654	ENST00000461478		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
intron-3UTR	ENST00000553866	ENST00000310137		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
intron-3UTR	ENST00000553866	ENST00000393979		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
intron-intron	ENST00000553866	ENST00000409372		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
intron-intron	ENST00000553866	ENST00000443702		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
intron-intron	ENST00000553866	ENST00000409738		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
intron-intron	ENST00000553866	ENST00000461478		ChiTaRS3.1			BE467850	CHGA	chr14	93401572	-	RBM14	chr11	66394194	+
3UTR-3UTR	ENST00000303400	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000303400	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000303400	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000303400	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000303400	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000303400	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000303400	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000303400	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505177	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505177	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505177	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505177	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505177	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505177	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505177	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505177	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000264750	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000264750	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000264750	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000264750	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000264750	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000264750	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000264750	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000264750	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000452175	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000452175	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000452175	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000452175	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000452175	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000452175	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000452175	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000452175	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000514708	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000514708	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000514708	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000514708	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000514708	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000514708	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000514708	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000514708	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000510794	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000510794	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000510794	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000510794	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000510794	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000510794	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000510794	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000510794	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505839	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505839	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505839	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505839	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505839	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505839	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000505839	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-3UTR	ENST00000505839	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000512289	ENST00000303400		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000512289	ENST00000505177		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000512289	ENST00000264750		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000512289	ENST00000452175		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000512289	ENST00000514708		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000512289	ENST00000510794		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-intron	ENST00000512289	ENST00000505839		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
3UTR-3UTR	ENST00000512289	ENST00000512289		ChiTaRS3.1			CB241800	MAEA	chr4	1333744	-	MAEA	chr4	1333683	+
intron-intron	ENST00000439155	ENST00000439155		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000439155	ENST00000367429		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000439155	ENST00000496761		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000439155	ENST00000359637		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000367429	ENST00000439155		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000367429	ENST00000367429		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000367429	ENST00000496761		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000367429	ENST00000359637		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000496761	ENST00000439155		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000496761	ENST00000367429		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000496761	ENST00000496761		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000496761	ENST00000359637		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000359637	ENST00000439155		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000359637	ENST00000367429		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000359637	ENST00000496761		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000359637	ENST00000359637		ChiTaRS3.1			CV350270	CFH	chr1	196643736	-	CFH	chr1	196643634	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807770	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-3CDS	ENST00000519416	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000519416	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000519416	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520615	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520615	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520615	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000443286	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000443286	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000443286	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520340	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520340	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520340	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000518415	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000518415	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000518415	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000522752	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000522752	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000522752	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000348567	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000348567	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000348567	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000330691	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000330691	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000330691	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000317827	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000317827	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000317827	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000379931	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000379931	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000379931	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000276520	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000276520	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000276520	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520973	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520973	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520973	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520611	ENST00000359337		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520611	ENST00000449103		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520611	ENST00000496720		ChiTaRS3.1			AI964040	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000405995	ENST00000536363		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000405995	ENST00000540689		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000405995	ENST00000601134		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000405995	ENST00000601629		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000405995	ENST00000292530		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000357304	ENST00000536363		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000357304	ENST00000540689		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000357304	ENST00000601134		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000357304	ENST00000601629		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000357304	ENST00000292530		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000458550	ENST00000536363		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000458550	ENST00000540689		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000458550	ENST00000601134		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000458550	ENST00000601629		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000458550	ENST00000292530		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000372249	ENST00000536363		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000372249	ENST00000540689		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000372249	ENST00000601134		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000372249	ENST00000601629		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000372249	ENST00000292530		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000465931	ENST00000536363		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000465931	ENST00000540689		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000465931	ENST00000601134		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000465931	ENST00000601629		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
3UTR-intron	ENST00000465931	ENST00000292530		ChiTaRS3.1			BE764180	PRRC2B	chr9	134371812	+	ZNF333	chr19	14828103	+
intron-intron	ENST00000371873	ENST00000504592		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000371873	ENST00000322953		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000371873	ENST00000428908		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000371873	ENST00000508653		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000371873	ENST00000444316		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000371873	ENST00000510950		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000450808	ENST00000504592		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000450808	ENST00000322953		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000450808	ENST00000428908		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000450808	ENST00000508653		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000450808	ENST00000444316		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000450808	ENST00000510950		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000471289	ENST00000504592		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000471289	ENST00000322953		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000471289	ENST00000428908		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000471289	ENST00000508653		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000471289	ENST00000444316		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-intron	ENST00000471289	ENST00000510950		ChiTaRS3.1			BF873120	CMPK1	chr1	47820034	-	BANK1	chr4	102408789	-
intron-3CDS	ENST00000449352	ENST00000252242		ChiTaRS3.1			BG994840	FAM160A2	chr11	6238783	+	KRT5	chr12	52908760	-
intron-3CDS	ENST00000529360	ENST00000252242		ChiTaRS3.1			BG994840	FAM160A2	chr11	6238783	+	KRT5	chr12	52908760	-
intron-3CDS	ENST00000265978	ENST00000252242		ChiTaRS3.1			BG994840	FAM160A2	chr11	6238783	+	KRT5	chr12	52908760	-
intron-3CDS	ENST00000524416	ENST00000252242		ChiTaRS3.1			BG994840	FAM160A2	chr11	6238783	+	KRT5	chr12	52908760	-
intron-intron	ENST00000393158	ENST00000393158		ChiTaRS3.1			AA938150	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000393158	ENST00000302251		ChiTaRS3.1			AA938150	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000302251	ENST00000393158		ChiTaRS3.1			AA938150	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000302251	ENST00000302251		ChiTaRS3.1			AA938150	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000455485	ENST00000452313		ChiTaRS3.1			AW819480	GUSBP11	chr22	23992272	-	NPIPB7	chr16	28928520	-
5UTR-3CDS	ENST00000314133	ENST00000328923		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
5UTR-intron	ENST00000314133	ENST00000554600		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
5UTR-intron	ENST00000314133	ENST00000557487		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
5UTR-intron	ENST00000314133	ENST00000414700		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
5UTR-intron	ENST00000314133	ENST00000553474		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
5UTR-intron	ENST00000314133	ENST00000449049		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
5UTR-intron	ENST00000314133	ENST00000393827		ChiTaRS3.1			BC009320	COX8A	chr11	63742141	-	SHMT2	chr12	57626576	+
intron-3CDS	ENST00000369393	ENST00000369393		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000369393	ENST00000428876		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-intron	ENST00000369393	ENST00000468568		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000428876	ENST00000369393		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000428876	ENST00000428876		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-intron	ENST00000428876	ENST00000468568		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000468568	ENST00000369393		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000468568	ENST00000428876		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-intron	ENST00000468568	ENST00000468568		ChiTaRS3.1			BE884350	MDN1	chr6	90383555	+	MDN1	chr6	90383071	-
intron-intron	ENST00000259523	ENST00000597629		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000259523	ENST00000248673		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000259523	ENST00000594045		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000377970	ENST00000597629		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000377970	ENST00000248673		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000377970	ENST00000594045		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000524013	ENST00000597629		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000524013	ENST00000248673		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-intron	ENST00000524013	ENST00000594045		ChiTaRS3.1			AM287184	MYC	chr8	128749879	-	ZFP36	chr19	39898260	+
intron-3CDS	ENST00000592864	ENST00000260818		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-intron	ENST00000592864	ENST00000486798		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-3CDS	ENST00000360228	ENST00000260818		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-intron	ENST00000360228	ENST00000486798		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-3CDS	ENST00000573710	ENST00000260818		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-intron	ENST00000573710	ENST00000486798		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-3CDS	ENST00000574822	ENST00000260818		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-intron	ENST00000574822	ENST00000486798		ChiTaRS3.1			AA772930	CACNA1A	chr19	13318845	-	DNAJC13	chr3	132235269	+
intron-3UTR	ENST00000355630	ENST00000420696		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000401534		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000559240		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000367897		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000540236		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000560641		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000474046		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000485769		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000355630	ENST00000540246		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-3UTR	ENST00000396617	ENST00000420696		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000401534		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000559240		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000367897		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000540236		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000560641		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000474046		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000485769		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000396617	ENST00000540246		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-3UTR	ENST00000402042	ENST00000420696		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000401534		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000559240		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000367897		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000540236		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000560641		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000474046		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000485769		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402042	ENST00000540246		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-3UTR	ENST00000466278	ENST00000420696		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000401534		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000559240		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000367897		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000540236		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000560641		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000474046		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000485769		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000466278	ENST00000540246		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-3UTR	ENST00000407029	ENST00000420696		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000401534		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000559240		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000367897		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000540236		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000560641		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000474046		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000485769		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000407029	ENST00000540246		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-3UTR	ENST00000402630	ENST00000420696		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000401534		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000559240		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000367897		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000540236		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000560641		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000474046		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000485769		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000402630	ENST00000540246		ChiTaRS3.1			BF089740	MKL1	chr22	40931066	+	PBX1	chr1	164820449	+
intron-intron	ENST00000361136	ENST00000361136		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000361136	ENST00000361875		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000361136	ENST00000492828		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000361875	ENST00000361136		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000361875	ENST00000361875		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000361875	ENST00000492828		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000492828	ENST00000361136		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000492828	ENST00000361875		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
intron-intron	ENST00000492828	ENST00000492828		ChiTaRS3.1			DW418630	TSC22D2	chr3	150134995	+	TSC22D2	chr3	150134266	+
Frame-shit	ENST00000224167	ENST00000312210		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000224167	ENST00000361936		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000224167	ENST00000361738		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000224167	ENST00000493834		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
5CDS-intron	ENST00000224167	ENST00000470877		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000371625	ENST00000312210		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000371625	ENST00000361936		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000371625	ENST00000361738		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
Frame-shit	ENST00000371625	ENST00000493834		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
5CDS-intron	ENST00000371625	ENST00000470877		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
intron-3CDS	ENST00000460340	ENST00000312210		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
intron-3CDS	ENST00000460340	ENST00000361936		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
intron-3CDS	ENST00000460340	ENST00000361738		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
intron-3CDS	ENST00000460340	ENST00000493834		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
intron-intron	ENST00000460340	ENST00000470877		ChiTaRS3.1			AW316630	PTGDS	chr9	139874404	-	FAM63A	chr1	150970227	+
intron-3UTR	ENST00000327435	ENST00000317702		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000327435	ENST00000591909		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000327435	ENST00000586653		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000327435	ENST00000592683		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000327435	ENST00000590967		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-3UTR	ENST00000327435	ENST00000591208		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-3UTR	ENST00000382093	ENST00000317702		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000382093	ENST00000591909		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000382093	ENST00000586653		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000382093	ENST00000592683		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000382093	ENST00000590967		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-3UTR	ENST00000382093	ENST00000591208		ChiTaRS3.1			BF095880	ADI1	chr2	3504659	+	TUBB6	chr18	12326134	-
intron-intron	ENST00000383737	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000383737	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000383737	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000383737	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000383737	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000383737	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000395734	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000395734	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000395734	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000395734	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000395734	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000395734	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000426837	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000426837	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000426837	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000426837	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000426837	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000426837	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000360240	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000360240	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000360240	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000360240	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000360240	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000360240	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000439356	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000439356	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000439356	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000439356	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000439356	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000439356	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000264724	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000264724	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000264724	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000264724	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000264724	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000264724	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000420772	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000420772	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000420772	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000420772	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000420772	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000420772	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000441748	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000441748	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000441748	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000441748	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000441748	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000441748	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000462206	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000462206	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000462206	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000462206	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000462206	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000462206	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000434267	ENST00000309446		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000434267	ENST00000421199		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000434267	ENST00000423015		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000434267	ENST00000458272		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000434267	ENST00000412414		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
intron-intron	ENST00000434267	ENST00000467833		ChiTaRS3.1			BI036770	MAP4	chr3	48120185	+	KLF7	chr2	207975648	-
5CDS-intron	ENST00000588240	ENST00000513238		ChiTaRS3.1			AV752590	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000588240	ENST00000307428		ChiTaRS3.1			AV752590	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000513238		ChiTaRS3.1			AV752590	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000592237	ENST00000307428		ChiTaRS3.1			AV752590	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000513238		ChiTaRS3.1			AV752590	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
5CDS-intron	ENST00000311979	ENST00000307428		ChiTaRS3.1			AV752590	TAF15	chr17	34171548	+	PARM1	chr4	75937702	+
In-frame	ENST00000537442	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000537442	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000537442	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000537442	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000537442	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000382421	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000382421	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000382421	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000382421	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000382421	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000545200	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000545200	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000545200	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000545200	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000545200	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000399466	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000399466	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000399466	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000399466	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
In-frame	ENST00000399466	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000322166	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000322166	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000322166	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000322166	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000322166	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000541778	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000541778	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000541778	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000541778	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
Frame-shit	ENST00000541778	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
5UTR-3CDS	ENST00000542015	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
5UTR-3CDS	ENST00000542015	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
5UTR-3CDS	ENST00000542015	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
5UTR-3CDS	ENST00000542015	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
5UTR-3CDS	ENST00000542015	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000545915	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000545915	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000545915	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000545915	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000545915	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000540228	ENST00000344749		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000540228	ENST00000262965		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000540228	ENST00000453954		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000540228	ENST00000395423		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-3CDS	ENST00000540228	ENST00000588136		ChiTaRS3.1			EU155120	NOP2	chr12	6669263	-	TCF3	chr19	1621194	-
intron-intron	ENST00000314045	ENST00000437600		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000292538		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000393824		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000547394		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000360264		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000425244		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000292535		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000549414		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000556210		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000550008		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000546411		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000314045	ENST00000560541		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000437600		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000292538		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000393824		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000547394		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000360264		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000425244		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000292535		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000549414		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000556210		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000550008		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000546411		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000306014	ENST00000560541		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000437600		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000292538		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000393824		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000547394		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000360264		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000425244		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000292535		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000549414		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000556210		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000550008		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000546411		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
intron-intron	ENST00000549271	ENST00000560541		ChiTaRS3.1			BF588530	DDX54	chr12	113600962	+	CUX1	chr7	101552939	-
5CDS-intron	ENST00000362042	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000362042	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000362042	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000362042	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000362042	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000362042	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000585291	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000585291	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000585291	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000585291	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000585291	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000585291	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000357480	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000357480	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000357480	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000357480	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000357480	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000357480	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000361665	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000361665	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000361665	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000361665	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000361665	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000361665	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
intron-intron	ENST00000579481	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
intron-intron	ENST00000579481	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
intron-intron	ENST00000579481	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
intron-intron	ENST00000579481	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
intron-intron	ENST00000579481	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
intron-intron	ENST00000579481	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000582155	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000582155	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000582155	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000582155	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000582155	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000582155	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000583378	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000583378	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000583378	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000583378	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000583378	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000583378	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000536222	ENST00000296449		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000536222	ENST00000438782		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000536222	ENST00000452691		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000536222	ENST00000366429		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000536222	ENST00000451634		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
5CDS-intron	ENST00000536222	ENST00000493870		ChiTaRS3.1			AA913200	NFE2L1	chr17	46133929	-	CCDC36	chr3	49280534	+
3UTR-intron	ENST00000530985	ENST00000464873		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000530985	ENST00000322623		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000530985	ENST00000417360		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000530985	ENST00000480616		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000343678	ENST00000464873		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000343678	ENST00000322623		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000343678	ENST00000417360		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000343678	ENST00000480616		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000278903	ENST00000464873		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000278903	ENST00000322623		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000278903	ENST00000417360		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
3UTR-intron	ENST00000278903	ENST00000480616		ChiTaRS3.1			AW794830	EI24	chr11	125453665	+	RUVBL1	chr3	127800216	-
intron-5UTR	ENST00000455485	ENST00000455485		ChiTaRS3.1			BF335970	GUSBP11	chr22	24057325	+	GUSBP11	chr22	24032539	+
intron-3UTR	ENST00000341761	ENST00000341761		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000341761	ENST00000374193		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000341761	ENST00000461942		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000341761	ENST00000374195		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000374193	ENST00000341761		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000374193	ENST00000374193		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000374193	ENST00000461942		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000374193	ENST00000374195		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000461942	ENST00000341761		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000461942	ENST00000374193		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000461942	ENST00000461942		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000461942	ENST00000374195		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000374195	ENST00000341761		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-3UTR	ENST00000374195	ENST00000374193		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000374195	ENST00000461942		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
intron-intron	ENST00000374195	ENST00000374195		ChiTaRS3.1			AI569210	WDR31	chr9	116077400	+	WDR31	chr9	116076793	+
3UTR-3UTR	ENST00000368564	ENST00000602845		ChiTaRS3.1			AA207010	KPNA5	chr6	117055806	-	NCBP2-AS2	chr3	196670333	-
intron-3UTR	ENST00000356348	ENST00000602845		ChiTaRS3.1			AA207010	KPNA5	chr6	117055806	-	NCBP2-AS2	chr3	196670333	-
intron-intron	ENST00000368679	ENST00000371671		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368679	ENST00000371663		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368679	ENST00000311502		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368679	ENST00000357466		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368679	ENST00000432842		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368679	ENST00000371675		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368679	ENST00000466096		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000371671		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000371663		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000311502		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000357466		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000432842		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000371675		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000368676	ENST00000466096		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000371671		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000371663		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000311502		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000357466		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000432842		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000371675		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000467145	ENST00000466096		ChiTaRS3.1			BE929380	ADAM12	chr10	128009733	-	RABL6	chr9	139704128	+
intron-intron	ENST00000303635	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000303635	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000303635	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000439411	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000439411	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000439411	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000476163	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000476163	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000476163	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000557126	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000557126	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000557126	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000473578	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000473578	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000473578	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000467404	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000467404	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000467404	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000476864	ENST00000440886		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000476864	ENST00000370611		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-intron	ENST00000476864	ENST00000491034		ChiTaRS3.1			EL582550	CAMTA1	chr1	7553553	+	LPAR3	chr1	85356656	-
intron-3CDS	ENST00000295901	ENST00000300850		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000295901	ENST00000394979		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000492933	ENST00000300850		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000492933	ENST00000394979		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000394431	ENST00000300850		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000394431	ENST00000394979		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000482510	ENST00000300850		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000482510	ENST00000394979		ChiTaRS3.1			CD626170	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000392750	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000392750	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000392750	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000392750	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000392750	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000392750	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000473645	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000473645	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000497056	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000497056	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000492396	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000492396	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000461494	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000461494	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000470131	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000470131	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487947	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487947	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000471885	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000471885	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000313899		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000353341		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000543098		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000352301		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487678	ENST00000508119		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487678	ENST00000541060		ChiTaRS3.1			BF096260	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
3UTR-intron	ENST00000360612	ENST00000550241		ChiTaRS3.1			AI307800	PIM3	chr22	50357560	-	ATP5G2	chr12	54069083	+
3UTR-intron	ENST00000360612	ENST00000602871		ChiTaRS3.1			AI307800	PIM3	chr22	50357560	-	ATP5G2	chr12	54069083	+
3UTR-intron	ENST00000360612	ENST00000394349		ChiTaRS3.1			AI307800	PIM3	chr22	50357560	-	ATP5G2	chr12	54069083	+
3UTR-intron	ENST00000360612	ENST00000549164		ChiTaRS3.1			AI307800	PIM3	chr22	50357560	-	ATP5G2	chr12	54069083	+
3UTR-intron	ENST00000360612	ENST00000338662		ChiTaRS3.1			AI307800	PIM3	chr22	50357560	-	ATP5G2	chr12	54069083	+
intron-3CDS	ENST00000367903	ENST00000367903		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000367903	ENST00000534288		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000367903	ENST00000313961		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000367903	ENST00000530507		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000367903	ENST00000527988		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-3CDS	ENST00000534288	ENST00000367903		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000534288	ENST00000534288		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000534288	ENST00000313961		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000534288	ENST00000530507		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000534288	ENST00000527988		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-3CDS	ENST00000313961	ENST00000367903		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000313961	ENST00000534288		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000313961	ENST00000313961		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000313961	ENST00000530507		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000313961	ENST00000527988		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-3CDS	ENST00000530507	ENST00000367903		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000530507	ENST00000534288		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000530507	ENST00000313961		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000530507	ENST00000530507		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000530507	ENST00000527988		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-3CDS	ENST00000527988	ENST00000367903		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000527988	ENST00000534288		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000527988	ENST00000313961		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000527988	ENST00000530507		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000527988	ENST00000527988		ChiTaRS3.1			AW961850	RGS5	chr1	163115693	-	RGS5	chr1	163117290	-
intron-intron	ENST00000350061	ENST00000350061		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000350061	ENST00000288139		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000350061	ENST00000422281		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000350061	ENST00000498251		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000350061	ENST00000540742		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000350061	ENST00000544977		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000288139	ENST00000350061		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000288139	ENST00000288139		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000288139	ENST00000422281		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000288139	ENST00000498251		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000288139	ENST00000540742		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000288139	ENST00000544977		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000422281	ENST00000350061		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000422281	ENST00000288139		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000422281	ENST00000422281		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000422281	ENST00000498251		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000422281	ENST00000540742		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000422281	ENST00000544977		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000498251	ENST00000350061		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000498251	ENST00000288139		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000498251	ENST00000422281		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000498251	ENST00000498251		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000498251	ENST00000540742		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000498251	ENST00000544977		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000540742	ENST00000350061		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000540742	ENST00000288139		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000540742	ENST00000422281		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000540742	ENST00000498251		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000540742	ENST00000540742		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000540742	ENST00000544977		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000544977	ENST00000350061		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000544977	ENST00000288139		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000544977	ENST00000422281		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000544977	ENST00000498251		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000544977	ENST00000540742		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000544977	ENST00000544977		ChiTaRS3.1			BF803210	CACNA1D	chr3	53603093	-	CACNA1D	chr3	53612676	+
intron-intron	ENST00000376406	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376406	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376406	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376406	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376405	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376405	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376405	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000376405	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494654	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494654	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494654	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494654	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000427406	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000427406	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000427406	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000427406	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547874	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547874	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547874	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547874	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551460	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551460	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551460	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551460	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547700	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547700	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547700	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547700	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481026	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481026	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481026	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481026	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552522	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552522	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552522	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552522	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420019	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420019	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420019	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420019	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548112	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548112	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548112	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548112	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550004	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550004	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550004	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550004	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548103	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548103	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548103	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548103	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000473187	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000473187	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000473187	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000473187	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552474	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552474	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552474	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552474	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420320	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420320	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420320	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000420320	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552263	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552263	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552263	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552263	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551204	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551204	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551204	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551204	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000549428	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000549428	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000549428	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000549428	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000495325	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000495325	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000495325	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000495325	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547681	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547681	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547681	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547681	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000449153	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000449153	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000449153	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000449153	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553048	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553048	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553048	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553048	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546487	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546487	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546487	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546487	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553196	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553196	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553196	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000553196	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494715	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494715	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494715	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000494715	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547353	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547353	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547353	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547353	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000383566	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000383566	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000383566	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000383566	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548827	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548827	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548827	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548827	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552349	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552349	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552349	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000552349	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550408	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550408	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550408	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550408	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481547	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481547	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481547	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000481547	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550688	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550688	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550688	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550688	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000440369	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000440369	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000440369	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000440369	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547047	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547047	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547047	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000547047	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548542	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548542	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548542	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548542	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548248	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548248	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548248	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548248	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000482029	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000482029	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000482029	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000482029	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550500	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550500	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550500	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000550500	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000435664	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000435664	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000435664	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000435664	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548433	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548433	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548433	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000548433	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551740	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551740	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551740	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000551740	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000467476	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000467476	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000467476	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000467476	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546539	ENST00000369799		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546539	ENST00000475081		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546539	ENST00000359172		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
intron-intron	ENST00000546539	ENST00000393614		ChiTaRS3.1			CA841960	MDC1	chr6	2005120	-	AHCYL1	chr1	110563832	+
5CDS-intron	ENST00000221543	ENST00000080059		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000221543	ENST00000354334		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000221543	ENST00000552960		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000221543	ENST00000380610		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000221543	ENST00000427332		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000221543	ENST00000488927		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000535102	ENST00000080059		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000535102	ENST00000354334		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000535102	ENST00000552960		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000535102	ENST00000380610		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000535102	ENST00000427332		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
5CDS-intron	ENST00000535102	ENST00000488927		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-intron	ENST00000598789	ENST00000080059		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-intron	ENST00000598789	ENST00000354334		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-intron	ENST00000598789	ENST00000552960		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-intron	ENST00000598789	ENST00000380610		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-intron	ENST00000598789	ENST00000427332		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-intron	ENST00000598789	ENST00000488927		ChiTaRS3.1			BF326450	TBC1D17	chr19	50385330	-	HDAC7	chr12	48189271	+
intron-3CDS	ENST00000403729	ENST00000348370		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000403729	ENST00000434298		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000403729	ENST00000559209		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000403729	ENST00000557998		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000403729	ENST00000561186		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000403729	ENST00000560080		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000482406	ENST00000348370		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000482406	ENST00000434298		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000482406	ENST00000559209		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000482406	ENST00000557998		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000482406	ENST00000561186		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000482406	ENST00000560080		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000404191	ENST00000348370		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000404191	ENST00000434298		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000404191	ENST00000559209		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000404191	ENST00000557998		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000404191	ENST00000561186		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000404191	ENST00000560080		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000346652	ENST00000348370		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000346652	ENST00000434298		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000346652	ENST00000559209		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000346652	ENST00000557998		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000346652	ENST00000561186		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000346652	ENST00000560080		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000307333	ENST00000348370		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000307333	ENST00000434298		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000307333	ENST00000559209		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000307333	ENST00000557998		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000307333	ENST00000561186		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000307333	ENST00000560080		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000295465	ENST00000348370		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000295465	ENST00000434298		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000295465	ENST00000559209		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000295465	ENST00000557998		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-3CDS	ENST00000295465	ENST00000561186		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000295465	ENST00000560080		ChiTaRS3.1			BF329240	ANTXR2	chr4	80901389	-	RNF111	chr15	59359150	-
intron-intron	ENST00000269391	ENST00000269391		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000269391	ENST00000319945		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000269391	ENST00000589912		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000269391	ENST00000592271		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000319945	ENST00000269391		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000319945	ENST00000319945		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000319945	ENST00000589912		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000319945	ENST00000592271		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000589912	ENST00000269391		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000589912	ENST00000319945		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000589912	ENST00000589912		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000589912	ENST00000592271		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000592271	ENST00000269391		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000592271	ENST00000319945		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000592271	ENST00000589912		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
intron-intron	ENST00000592271	ENST00000592271		ChiTaRS3.1			BF363980	RNF157	chr17	74195389	+	RNF157	chr17	74189679	+
3UTR-3UTR	ENST00000487273	ENST00000487273		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
3UTR-intron	ENST00000487273	ENST00000466936		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
3UTR-intron	ENST00000487273	ENST00000481513		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
3UTR-intron	ENST00000487273	ENST00000484143		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-3UTR	ENST00000466936	ENST00000487273		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000466936	ENST00000466936		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000466936	ENST00000481513		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000466936	ENST00000484143		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-3UTR	ENST00000481513	ENST00000487273		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000481513	ENST00000466936		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000481513	ENST00000481513		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000481513	ENST00000484143		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-3UTR	ENST00000484143	ENST00000487273		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000484143	ENST00000466936		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000484143	ENST00000481513		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000484143	ENST00000484143		ChiTaRS3.1			BU686080	ADAM9	chr8	38962041	-	ADAM9	chr8	38961665	+
intron-intron	ENST00000324238	ENST00000324238		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000324238	ENST00000544695		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000324238	ENST00000577725		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000544695	ENST00000324238		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000544695	ENST00000544695		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000544695	ENST00000577725		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000577725	ENST00000324238		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000577725	ENST00000544695		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000577725	ENST00000577725		ChiTaRS3.1			T78240	CRLF3	chr17	29114719	+	CRLF3	chr17	29113978	+
intron-intron	ENST00000481476	ENST00000410534		ChiTaRS3.1			T03380	PTGES	chr9	132500698	+	SOX2-OT	chr3	181458101	-
intron-intron	ENST00000340607	ENST00000410534		ChiTaRS3.1			T03380	PTGES	chr9	132500698	+	SOX2-OT	chr3	181458101	-
5UTR-5UTR	ENST00000582888	ENST00000418604		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000582888	ENST00000303958		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000582888	ENST00000361621		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-intron	ENST00000582888	ENST00000466486		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000602676	ENST00000418604		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000602676	ENST00000303958		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000602676	ENST00000361621		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-intron	ENST00000602676	ENST00000466486		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000322297	ENST00000418604		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000322297	ENST00000303958		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000322297	ENST00000361621		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-intron	ENST00000322297	ENST00000466486		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000583542	ENST00000418604		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000583542	ENST00000303958		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-5UTR	ENST00000583542	ENST00000361621		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
5UTR-intron	ENST00000583542	ENST00000466486		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000588673	ENST00000418604		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000588673	ENST00000303958		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000588673	ENST00000361621		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
intron-intron	ENST00000588673	ENST00000466486		ChiTaRS3.1			DA327340	OAZ1	chr19	2269577	+	PLP1	chrX	103031802	+
intron-3UTR	ENST00000269967	ENST00000439576		ChiTaRS3.1			BG924790	CCDC97	chr19	41826247	-	ACAN	chr15	89418009	+
intron-intron	ENST00000269967	ENST00000558207		ChiTaRS3.1			BG924790	CCDC97	chr19	41826247	-	ACAN	chr15	89418009	+
intron-intron	ENST00000269967	ENST00000559004		ChiTaRS3.1			BG924790	CCDC97	chr19	41826247	-	ACAN	chr15	89418009	+
intron-intron	ENST00000269967	ENST00000352105		ChiTaRS3.1			BG924790	CCDC97	chr19	41826247	-	ACAN	chr15	89418009	+
intron-intron	ENST00000269967	ENST00000561243		ChiTaRS3.1			BG924790	CCDC97	chr19	41826247	-	ACAN	chr15	89418009	+
intron-3CDS	ENST00000449707	ENST00000449707		ChiTaRS3.1			AL701230	ZNF142	chr2	219503454	+	ZNF142	chr2	219507562	-
intron-3CDS	ENST00000449707	ENST00000411696		ChiTaRS3.1			AL701230	ZNF142	chr2	219503454	+	ZNF142	chr2	219507562	-
intron-3CDS	ENST00000411696	ENST00000449707		ChiTaRS3.1			AL701230	ZNF142	chr2	219503454	+	ZNF142	chr2	219507562	-
intron-3CDS	ENST00000411696	ENST00000411696		ChiTaRS3.1			AL701230	ZNF142	chr2	219503454	+	ZNF142	chr2	219507562	-
intron-intron	ENST00000519937	ENST00000379056		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000519937	ENST00000529421		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000519937	ENST00000530705		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000519937	ENST00000379060		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000519937	ENST00000379055		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000519937	ENST00000309246		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000342375	ENST00000379056		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000342375	ENST00000529421		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000342375	ENST00000530705		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000342375	ENST00000379060		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000342375	ENST00000379055		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000342375	ENST00000309246		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000393822	ENST00000379056		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000393822	ENST00000529421		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000393822	ENST00000530705		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000393822	ENST00000379060		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000393822	ENST00000379055		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000393822	ENST00000309246		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000409383	ENST00000379056		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000409383	ENST00000529421		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000409383	ENST00000530705		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000409383	ENST00000379060		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000409383	ENST00000379055		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
intron-intron	ENST00000409383	ENST00000309246		ChiTaRS3.1			BI821350	SFTPB	chr2	85893658	-	TPT1	chr13	45914711	+
In-frame	ENST00000361204	ENST00000361204		ChiTaRS3.1			BF081770	SREBF2	chr22	42264651	-	SREBF2	chr22	42269880	+
5CDS-intron	ENST00000361204	ENST00000491541		ChiTaRS3.1			BF081770	SREBF2	chr22	42264651	-	SREBF2	chr22	42269880	+
intron-3CDS	ENST00000491541	ENST00000361204		ChiTaRS3.1			BF081770	SREBF2	chr22	42264651	-	SREBF2	chr22	42269880	+
intron-intron	ENST00000491541	ENST00000491541		ChiTaRS3.1			BF081770	SREBF2	chr22	42264651	-	SREBF2	chr22	42269880	+
intron-intron	ENST00000437600	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000437600	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000437600	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000437600	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000437600	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000437600	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292538	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292538	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292538	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292538	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292538	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292538	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000393824	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000393824	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000393824	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000393824	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000393824	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000393824	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000547394	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000547394	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000547394	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000547394	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000547394	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000547394	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000360264	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000360264	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000360264	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000360264	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000360264	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000360264	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000425244	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000425244	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000425244	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000425244	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000425244	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000425244	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292535	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292535	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292535	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292535	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292535	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000292535	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000549414	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000549414	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000549414	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000549414	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000549414	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000549414	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000556210	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000556210	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000556210	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000556210	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000556210	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000556210	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000550008	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000550008	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000550008	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000550008	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000550008	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000550008	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000546411	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000546411	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000546411	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000546411	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000546411	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000546411	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000560541	ENST00000416426		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000560541	ENST00000284073		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000560541	ENST00000322684		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000560541	ENST00000442934		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000560541	ENST00000579180		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000560541	ENST00000579505		ChiTaRS3.1			AW994070	CUX1	chr7	101619375	-	MSI2	chr17	55679751	-
intron-intron	ENST00000440491	ENST00000604938		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401010		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000339388		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000369323		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000605317		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000479926		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000604894		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401009		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604938		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401010		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000339388		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000369323		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000605317		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000479926		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604894		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401009		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604938		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401010		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000339388		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000369323		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000605317		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000479926		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604894		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401009		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604938		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401010		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000339388		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000369323		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000605317		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000479926		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604894		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401009		ChiTaRS3.1			BC026270	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-3CDS	ENST00000329957	ENST00000268482		ChiTaRS3.1			BF852500	MOB2	chr11	1774049	-	DHX38	chr16	72141392	-
intron-3CDS	ENST00000329957	ENST00000536867		ChiTaRS3.1			BF852500	MOB2	chr11	1774049	-	DHX38	chr16	72141392	-
intron-3CDS	ENST00000526462	ENST00000268482		ChiTaRS3.1			BF852500	MOB2	chr11	1774049	-	DHX38	chr16	72141392	-
intron-3CDS	ENST00000526462	ENST00000536867		ChiTaRS3.1			BF852500	MOB2	chr11	1774049	-	DHX38	chr16	72141392	-
intron-intron	ENST00000502976	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000502976	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000502976	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000502976	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000422453	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000422453	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000422453	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000422453	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000451728	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000451728	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000451728	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000451728	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000446936	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000446936	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000446936	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000446936	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000500450	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000500450	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000500450	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000500450	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000504813	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000504813	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000504813	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000504813	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000441626	ENST00000400227		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000441626	ENST00000349736		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000441626	ENST00000217244		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
intron-intron	ENST00000441626	ENST00000400217		ChiTaRS3.1			BG149780	CNBP	chr3	128887013	+	CSNK2A1	chr20	523424	+
Frame-shit	ENST00000409402	ENST00000409402		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
Frame-shit	ENST00000409402	ENST00000410092		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000409402	ENST00000309836		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000409402	ENST00000453447		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000409402	ENST00000383356		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-intron	ENST00000409402	ENST00000464481		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
Frame-shit	ENST00000410092	ENST00000409402		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
Frame-shit	ENST00000410092	ENST00000410092		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000410092	ENST00000309836		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000410092	ENST00000453447		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000410092	ENST00000383356		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-intron	ENST00000410092	ENST00000464481		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
In-frame	ENST00000309836	ENST00000409402		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
In-frame	ENST00000309836	ENST00000410092		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000309836	ENST00000309836		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000309836	ENST00000453447		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000309836	ENST00000383356		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-intron	ENST00000309836	ENST00000464481		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
In-frame	ENST00000453447	ENST00000409402		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
In-frame	ENST00000453447	ENST00000410092		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000453447	ENST00000309836		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000453447	ENST00000453447		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000453447	ENST00000383356		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-intron	ENST00000453447	ENST00000464481		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
Frame-shit	ENST00000383356	ENST00000409402		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
Frame-shit	ENST00000383356	ENST00000410092		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000383356	ENST00000309836		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000383356	ENST00000453447		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-5UTR	ENST00000383356	ENST00000383356		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
5CDS-intron	ENST00000383356	ENST00000464481		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-3CDS	ENST00000464481	ENST00000409402		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-3CDS	ENST00000464481	ENST00000410092		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-5UTR	ENST00000464481	ENST00000309836		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-5UTR	ENST00000464481	ENST00000453447		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-5UTR	ENST00000464481	ENST00000383356		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-intron	ENST00000464481	ENST00000464481		ChiTaRS3.1			BF947000	SPIRE1	chr18	12535473	-	SPIRE1	chr18	12635097	-
intron-intron	ENST00000543378	ENST00000543378		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000543378	ENST00000327564		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000543378	ENST00000394713		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000543378	ENST00000584368		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000543378	ENST00000341671		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000543378	ENST00000581786		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000327564	ENST00000543378		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000327564	ENST00000327564		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000327564	ENST00000394713		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000327564	ENST00000584368		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000327564	ENST00000341671		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000327564	ENST00000581786		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000394713	ENST00000543378		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000394713	ENST00000327564		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000394713	ENST00000394713		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000394713	ENST00000584368		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000394713	ENST00000341671		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000394713	ENST00000581786		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000584368	ENST00000543378		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000584368	ENST00000327564		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000584368	ENST00000394713		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000584368	ENST00000584368		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000584368	ENST00000341671		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000584368	ENST00000581786		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000341671	ENST00000543378		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000341671	ENST00000327564		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000341671	ENST00000394713		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000341671	ENST00000584368		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000341671	ENST00000341671		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000341671	ENST00000581786		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000581786	ENST00000543378		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000581786	ENST00000327564		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000581786	ENST00000394713		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000581786	ENST00000584368		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000581786	ENST00000341671		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
intron-intron	ENST00000581786	ENST00000581786		ChiTaRS3.1			AW947380	LRRC37B	chr17	30354788	-	LRRC37B	chr17	30362658	-
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
5CDS-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
5CDS-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-3CDS	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-3CDS	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050795	KMT2A	chr11	118355622	-	AFF1	chr4	87968221	+
5CDS-3UTR	ENST00000382110	ENST00000502732		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000367623		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000507173		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000511413		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000392043		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-3UTR	ENST00000382110	ENST00000408940		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000344730		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000512653		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000504405		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-3UTR	ENST00000324266	ENST00000502732		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000367623		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000507173		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000511413		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000392043		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-3UTR	ENST00000324266	ENST00000408940		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000344730		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000512653		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000504405		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-3UTR	ENST00000469147	ENST00000502732		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000367623		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000507173		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000511413		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000392043		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-3UTR	ENST00000469147	ENST00000408940		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000344730		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000512653		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000504405		ChiTaRS3.1			BF833240	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
intron-intron	ENST00000512913	ENST00000476233		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000512913	ENST00000354667		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000512913	ENST00000356674		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000265073	ENST00000476233		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000265073	ENST00000354667		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000265073	ENST00000356674		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000515355	ENST00000476233		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000515355	ENST00000354667		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000515355	ENST00000356674		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000502897	ENST00000476233		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000502897	ENST00000354667		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000502897	ENST00000356674		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000504789	ENST00000476233		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000504789	ENST00000354667		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000504789	ENST00000356674		ChiTaRS3.1			AW373630	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000606498	ENST00000606498		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000606498	ENST00000294613		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000606498	ENST00000371180		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000606498	ENST00000472989		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000606498	ENST00000371177		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000294613	ENST00000606498		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000294613	ENST00000294613		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000294613	ENST00000371180		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000294613	ENST00000472989		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000294613	ENST00000371177		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371180	ENST00000606498		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371180	ENST00000294613		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371180	ENST00000371180		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371180	ENST00000472989		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371180	ENST00000371177		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000472989	ENST00000606498		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000472989	ENST00000294613		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000472989	ENST00000371180		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000472989	ENST00000472989		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000472989	ENST00000371177		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371177	ENST00000606498		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371177	ENST00000294613		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371177	ENST00000371180		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371177	ENST00000472989		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
intron-intron	ENST00000371177	ENST00000371177		ChiTaRS3.1			AA648700	TM2D1	chr1	62146918	-	TM2D1	chr1	62146718	+
In-frame	ENST00000261574	ENST00000261574		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000261574	ENST00000490680		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000261574	ENST00000539640		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
5CDS-3UTR	ENST00000261574	ENST00000493492		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000490680	ENST00000261574		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000490680	ENST00000490680		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000490680	ENST00000539640		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
5CDS-3UTR	ENST00000490680	ENST00000493492		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000539640	ENST00000261574		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000539640	ENST00000490680		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
In-frame	ENST00000539640	ENST00000539640		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
5CDS-3UTR	ENST00000539640	ENST00000493492		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
3UTR-3CDS	ENST00000493492	ENST00000261574		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
3UTR-3CDS	ENST00000493492	ENST00000490680		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
3UTR-3CDS	ENST00000493492	ENST00000539640		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
3UTR-3UTR	ENST00000493492	ENST00000493492		ChiTaRS3.1			AA249390	IPO5	chr13	98658596	+	IPO5	chr13	98658460	+
intron-3UTR	ENST00000295974	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000295974	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000295974	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000513140	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000513140	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000513140	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000508593	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000508593	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000508593	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000506352	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000506352	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000506352	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000511572	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000511572	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000511572	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000543538	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000543538	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000543538	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000502841	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000502841	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000502841	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-3UTR	ENST00000504305	ENST00000320580		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000504305	ENST00000529757		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000504305	ENST00000524815		ChiTaRS3.1			BG619580	APBB2	chr4	41125323	-	PACS1	chr11	66011881	+
intron-intron	ENST00000290246	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000290246	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000372176	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000396391	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000439931	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000445496	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000454865	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000352077	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000290246		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000372176		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000396391		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000439931		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000445496		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000454865		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000352077		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000488853	ENST00000488853		ChiTaRS3.1			DB027600	ELMO2	chr20	45008911	-	ELMO2	chr20	45011021	-
intron-intron	ENST00000368615	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368615	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368615	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368615	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368615	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000392638	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000392638	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000392638	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000392638	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000392638	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000344079	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000344079	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000344079	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000344079	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000344079	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000356571	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000356571	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000356571	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000356571	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000356571	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368614	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368614	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368614	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368614	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368614	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368613	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368613	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368613	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368613	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368613	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368612	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368612	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368612	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368612	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368612	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368610	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368610	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368610	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368610	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000368610	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000432555	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000432555	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000432555	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000432555	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000432555	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000475747	ENST00000330909		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000475747	ENST00000402939		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000475747	ENST00000483466		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000475747	ENST00000497477		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-intron	ENST00000475747	ENST00000470990		ChiTaRS3.1			BQ882250	LRRC27	chr10	134166275	-	MAGI1	chr3	65934197	+
intron-3CDS	ENST00000344204	ENST00000205061		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000344204	ENST00000422840		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000344204	ENST00000447066		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000537187	ENST00000205061		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000537187	ENST00000422840		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000537187	ENST00000447066		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000509967	ENST00000205061		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000509967	ENST00000422840		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000509967	ENST00000447066		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000515710	ENST00000205061		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000515710	ENST00000422840		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000515710	ENST00000447066		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000344135	ENST00000205061		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000344135	ENST00000422840		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000344135	ENST00000447066		ChiTaRS3.1			AW839130	TRIO	chr5	14273827	+	GLG1	chr16	74496498	-
intron-3CDS	ENST00000429150	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000429150	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000416623	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000416623	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000392309	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000392309	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000392307	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000392307	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000437412	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000437412	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000444202	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000444202	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000493898	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000493898	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000360537	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000360537	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000354765	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000354765	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000367572	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000367572	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-3CDS	ENST00000367571	ENST00000360184		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
intron-intron	ENST00000367571	ENST00000556791		ChiTaRS3.1			DR980000	PLAGL1	chr6	144281759	+	DYNC1H1	chr14	102516789	+
3UTR-intron	ENST00000297268	ENST00000345363		ChiTaRS3.1			AW947290	COL1A2	chr7	94060247	+	LTB4R	chr14	24783887	-
3UTR-5UTR	ENST00000297268	ENST00000396789		ChiTaRS3.1			AW947290	COL1A2	chr7	94060247	+	LTB4R	chr14	24783887	-
3UTR-intron	ENST00000297268	ENST00000396782		ChiTaRS3.1			AW947290	COL1A2	chr7	94060247	+	LTB4R	chr14	24783887	-
intron-3CDS	ENST00000378004	ENST00000394023		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000378004	ENST00000550164		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000378004	ENST00000347471		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000378004	ENST00000267064		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-intron	ENST00000378004	ENST00000550859		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000274498	ENST00000394023		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000274498	ENST00000550164		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000274498	ENST00000347471		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000274498	ENST00000267064		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-intron	ENST00000274498	ENST00000550859		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000486650	ENST00000394023		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000486650	ENST00000550164		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000486650	ENST00000347471		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-3CDS	ENST00000486650	ENST00000267064		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-intron	ENST00000486650	ENST00000550859		ChiTaRS3.1			BE837660	ARHGAP26	chr5	142465056	+	SMARCC2	chr12	56574843	-
intron-5UTR	ENST00000215882	ENST00000371222		ChiTaRS3.1			CD614310	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-5UTR	ENST00000451283	ENST00000371222		ChiTaRS3.1			CD614310	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-5UTR	ENST00000461267	ENST00000371222		ChiTaRS3.1			CD614310	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-3CDS	ENST00000478951	ENST00000478951		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000478951	ENST00000393917		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000478951	ENST00000273368		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000478951	ENST00000455401		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-intron	ENST00000478951	ENST00000486460		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000393917	ENST00000478951		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000393917	ENST00000393917		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000393917	ENST00000273368		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000393917	ENST00000455401		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-intron	ENST00000393917	ENST00000486460		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000273368	ENST00000478951		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000273368	ENST00000393917		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000273368	ENST00000273368		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000273368	ENST00000455401		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-intron	ENST00000273368	ENST00000486460		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000455401	ENST00000478951		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000455401	ENST00000393917		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000455401	ENST00000273368		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-3CDS	ENST00000455401	ENST00000455401		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
5UTR-intron	ENST00000455401	ENST00000486460		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000486460	ENST00000478951		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000486460	ENST00000393917		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000486460	ENST00000273368		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-3CDS	ENST00000486460	ENST00000455401		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
intron-intron	ENST00000486460	ENST00000486460		ChiTaRS3.1			W28770	TAGLN3	chr3	111718188	-	TAGLN3	chr3	111718345	+
Frame-shit	ENST00000349048	ENST00000428099		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
Frame-shit	ENST00000349048	ENST00000369966		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
Frame-shit	ENST00000349048	ENST00000189444		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
5CDS-intron	ENST00000349048	ENST00000336486		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
Frame-shit	ENST00000403390	ENST00000428099		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
Frame-shit	ENST00000403390	ENST00000369966		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
Frame-shit	ENST00000403390	ENST00000189444		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
5CDS-intron	ENST00000403390	ENST00000336486		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
3UTR-3CDS	ENST00000496824	ENST00000428099		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
3UTR-3CDS	ENST00000496824	ENST00000369966		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
3UTR-3CDS	ENST00000496824	ENST00000189444		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
3UTR-intron	ENST00000496824	ENST00000336486		ChiTaRS3.1			DB010470	PFKL	chr21	45732023	+	NFKB2	chr10	104156504	+
5UTR-intron	ENST00000477049	ENST00000396193		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5UTR-intron	ENST00000477049	ENST00000396191		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5UTR-intron	ENST00000477049	ENST00000321453		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5UTR-intron	ENST00000477049	ENST00000396184		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5UTR-intron	ENST00000477049	ENST00000479980		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5UTR-intron	ENST00000477049	ENST00000396182		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000224140	ENST00000396193		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000224140	ENST00000396191		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000224140	ENST00000321453		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000224140	ENST00000396184		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000224140	ENST00000479980		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000224140	ENST00000396182		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000393220	ENST00000396193		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000393220	ENST00000396191		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000393220	ENST00000321453		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000393220	ENST00000396184		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000393220	ENST00000479980		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000393220	ENST00000396182		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000372169	ENST00000396193		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000372169	ENST00000396191		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000372169	ENST00000321453		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000372169	ENST00000396184		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000372169	ENST00000479980		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
5CDS-intron	ENST00000372169	ENST00000396182		ChiTaRS3.1			H11830	SETX	chr9	135145001	-	PDE1C	chr7	32108957	-
intron-intron	ENST00000444303	ENST00000389462		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000444303	ENST00000309083		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000444303	ENST00000538057		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-intron	ENST00000396554	ENST00000389462		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000396554	ENST00000309083		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000396554	ENST00000538057		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-intron	ENST00000530864	ENST00000389462		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000530864	ENST00000309083		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000530864	ENST00000538057		ChiTaRS3.1			AW882230	AMPD3	chr11	10496054	+	PTMS	chr12	6879881	-
intron-3UTR	ENST00000252711	ENST00000264313		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-intron	ENST00000252711	ENST00000506375		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000252711	ENST00000512093		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000471378	ENST00000264313		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-intron	ENST00000471378	ENST00000506375		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000471378	ENST00000512093		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000404554	ENST00000264313		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-intron	ENST00000404554	ENST00000506375		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000404554	ENST00000512093		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000307300	ENST00000264313		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-intron	ENST00000307300	ENST00000506375		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000307300	ENST00000512093		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000407129	ENST00000264313		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-intron	ENST00000407129	ENST00000506375		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3UTR	ENST00000407129	ENST00000512093		ChiTaRS3.1			AW169930	NDUFA10	chr2	240900513	+	SLAIN2	chr4	48425673	-
intron-3CDS	ENST00000205061	ENST00000258439		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000205061	ENST00000432959		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000205061	ENST00000435268		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000422840	ENST00000258439		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000422840	ENST00000432959		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000422840	ENST00000435268		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000447066	ENST00000258439		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000447066	ENST00000432959		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
intron-3CDS	ENST00000447066	ENST00000435268		ChiTaRS3.1			AA863230	GLG1	chr16	74486207	+	TMEM127	chr2	96919781	+
5CDS-intron	ENST00000252699	ENST00000459639		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
5CDS-intron	ENST00000252699	ENST00000380276		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
5CDS-intron	ENST00000252699	ENST00000291552		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
5CDS-intron	ENST00000252699	ENST00000398137		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
5CDS-intron	ENST00000252699	ENST00000486519		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000424234	ENST00000459639		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000424234	ENST00000380276		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000424234	ENST00000291552		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000424234	ENST00000398137		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000424234	ENST00000486519		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000390009	ENST00000459639		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000390009	ENST00000380276		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000390009	ENST00000291552		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000390009	ENST00000398137		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000390009	ENST00000486519		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000497637	ENST00000459639		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000497637	ENST00000380276		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000497637	ENST00000291552		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000497637	ENST00000398137		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-intron	ENST00000497637	ENST00000486519		ChiTaRS3.1			BI032170	ACTN4	chr19	39200953	+	U2AF1	chr21	44513659	-
intron-3CDS	ENST00000334678	ENST00000245907		ChiTaRS3.1			BX091320	RPS19BP1	chr22	39926945	-	C3	chr19	6677899	-
intron-5UTR	ENST00000334678	ENST00000599668		ChiTaRS3.1			BX091320	RPS19BP1	chr22	39926945	-	C3	chr19	6677899	-
5UTR-intron	ENST00000520753	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520753	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520753	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520753	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000520753	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000520753	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520753	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520753	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000521613	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000521613	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000521613	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000521613	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000521613	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000521613	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000521613	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000521613	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000519940	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000519940	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000519940	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000519940	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000519940	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000519940	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000519940	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000519940	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000519332	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000519332	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000519332	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000519332	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000519332	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000519332	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000519332	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000519332	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520007	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520007	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520007	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520007	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000520007	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000520007	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520007	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520007	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000600800	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000600800	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000600800	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000600800	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000600800	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000600800	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000600800	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000600800	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000357778	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000357778	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000357778	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000357778	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000357778	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000357778	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000357778	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000357778	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000391898	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000391898	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000391898	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000391898	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000391898	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000391898	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000391898	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000391898	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000359009	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000359009	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000359009	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000359009	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000359009	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000359009	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000359009	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000359009	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000447740	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000447740	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000447740	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000447740	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000447740	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000447740	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000447740	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000447740	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520153	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520153	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520153	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000520153	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000520153	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000520153	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520153	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000520153	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000520015	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000520015	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000520015	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3UTR	ENST00000520015	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000520015	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-5UTR	ENST00000520015	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000520015	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-intron	ENST00000520015	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000522431	ENST00000563392		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000522431	ENST00000570055		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000522431	ENST00000563206		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-3UTR	ENST00000522431	ENST00000451014		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000522431	ENST00000568625		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-5UTR	ENST00000522431	ENST00000288071		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000522431	ENST00000393657		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
5UTR-intron	ENST00000522431	ENST00000355992		ChiTaRS3.1			DB148330	CARD8	chr19	48752777	-	DDX19B	chr16	70348805	+
intron-3CDS	ENST00000409280	ENST00000369536		ChiTaRS3.1			DA751840	C7orf31	chr7	25219590	-	RARS2	chr6	88279310	-
intron-intron	ENST00000409280	ENST00000497828		ChiTaRS3.1			DA751840	C7orf31	chr7	25219590	-	RARS2	chr6	88279310	-
intron-3CDS	ENST00000283905	ENST00000369536		ChiTaRS3.1			DA751840	C7orf31	chr7	25219590	-	RARS2	chr6	88279310	-
intron-intron	ENST00000283905	ENST00000497828		ChiTaRS3.1			DA751840	C7orf31	chr7	25219590	-	RARS2	chr6	88279310	-
5CDS-intron	ENST00000355528	ENST00000384994		ChiTaRS3.1			BF922050	TBCD	chr17	80887004	-	NEAT1	chr11	65195344	-
intron-intron	ENST00000397466	ENST00000384994		ChiTaRS3.1			BF922050	TBCD	chr17	80887004	-	NEAT1	chr11	65195344	-
5CDS-intron	ENST00000539345	ENST00000384994		ChiTaRS3.1			BF922050	TBCD	chr17	80887004	-	NEAT1	chr11	65195344	-
intron-intron	ENST00000576691	ENST00000384994		ChiTaRS3.1			BF922050	TBCD	chr17	80887004	-	NEAT1	chr11	65195344	-
3UTR-3UTR	ENST00000491148	ENST00000491148		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000491148	ENST00000282957		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000491148	ENST00000498639		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000491148		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000282957		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000498639		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000491148		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000282957		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000498639		ChiTaRS3.1			T10370	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
intron-3UTR	ENST00000348165	ENST00000591790		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000348165	ENST00000504904		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000348165	ENST00000292069		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000348165	ENST00000342634		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-intron	ENST00000348165	ENST00000589652		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000389103	ENST00000591790		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000389103	ENST00000504904		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000389103	ENST00000292069		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-3UTR	ENST00000389103	ENST00000342634		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
intron-intron	ENST00000389103	ENST00000589652		ChiTaRS3.1			BF327170	UBE3C	chr7	156994188	-	ZNF667	chr19	56953778	-
3UTR-3UTR	ENST00000281938	ENST00000367265		ChiTaRS3.1			BF840350	HSPB8	chr12	119631687	+	KDM5B	chr1	202698111	+
3UTR-3UTR	ENST00000281938	ENST00000367264		ChiTaRS3.1			BF840350	HSPB8	chr12	119631687	+	KDM5B	chr1	202698111	+
3UTR-intron	ENST00000281938	ENST00000456180		ChiTaRS3.1			BF840350	HSPB8	chr12	119631687	+	KDM5B	chr1	202698111	+
intron-3UTR	ENST00000542496	ENST00000367265		ChiTaRS3.1			BF840350	HSPB8	chr12	119631687	+	KDM5B	chr1	202698111	+
intron-3UTR	ENST00000542496	ENST00000367264		ChiTaRS3.1			BF840350	HSPB8	chr12	119631687	+	KDM5B	chr1	202698111	+
intron-intron	ENST00000542496	ENST00000456180		ChiTaRS3.1			BF840350	HSPB8	chr12	119631687	+	KDM5B	chr1	202698111	+
intron-intron	ENST00000396592	ENST00000545334		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000396592	ENST00000537927		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000396592	ENST00000318304		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000396592	ENST00000535047		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000396592	ENST00000542629		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000396592	ENST00000228425		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000396592	ENST00000541633		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000422365	ENST00000545334		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-3UTR	ENST00000422365	ENST00000537927		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-3UTR	ENST00000422365	ENST00000318304		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000422365	ENST00000535047		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000422365	ENST00000542629		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-3UTR	ENST00000422365	ENST00000228425		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000422365	ENST00000541633		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000492775	ENST00000545334		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000492775	ENST00000537927		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000492775	ENST00000318304		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000492775	ENST00000535047		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000492775	ENST00000542629		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000492775	ENST00000228425		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000492775	ENST00000541633		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000469823	ENST00000545334		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000469823	ENST00000537927		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000469823	ENST00000318304		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000469823	ENST00000535047		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000469823	ENST00000542629		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000469823	ENST00000228425		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000469823	ENST00000541633		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000313616	ENST00000545334		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000313616	ENST00000537927		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000313616	ENST00000318304		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000313616	ENST00000535047		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000313616	ENST00000542629		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3UTR	ENST00000313616	ENST00000228425		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-intron	ENST00000313616	ENST00000541633		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000541540	ENST00000545334		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-3UTR	ENST00000541540	ENST00000537927		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-3UTR	ENST00000541540	ENST00000318304		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000541540	ENST00000535047		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000541540	ENST00000542629		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-3UTR	ENST00000541540	ENST00000228425		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
3UTR-intron	ENST00000541540	ENST00000541633		ChiTaRS3.1			BF111070	MCMDC2	chr8	67832557	+	PPFIBP1	chr12	27846672	-
intron-3CDS	ENST00000457714	ENST00000533760		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000457714	ENST00000397957		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000457714	ENST00000316851		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000457714	ENST00000401611		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3CDS	ENST00000361589	ENST00000533760		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000361589	ENST00000397957		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000361589	ENST00000316851		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000361589	ENST00000401611		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3CDS	ENST00000401917	ENST00000533760		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000401917	ENST00000397957		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000401917	ENST00000316851		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000401917	ENST00000401611		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3CDS	ENST00000545397	ENST00000533760		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000545397	ENST00000397957		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000545397	ENST00000316851		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000545397	ENST00000401611		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3CDS	ENST00000466350	ENST00000533760		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000466350	ENST00000397957		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000466350	ENST00000316851		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-3UTR	ENST00000466350	ENST00000401611		ChiTaRS3.1			T07790	NLGN1	chr3	173417501	+	NCAM1	chr11	113085141	+
intron-intron	ENST00000264485	ENST00000374820		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000264485	ENST00000452740		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000264485	ENST00000480175		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000425175	ENST00000374820		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000425175	ENST00000452740		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000425175	ENST00000480175		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000351898	ENST00000374820		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000351898	ENST00000452740		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000351898	ENST00000480175		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000340595	ENST00000374820		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000340595	ENST00000452740		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000340595	ENST00000480175		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000514331	ENST00000374820		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000514331	ENST00000452740		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000514331	ENST00000480175		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000512686	ENST00000374820		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000512686	ENST00000452740		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000512686	ENST00000480175		ChiTaRS3.1			CK823810	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-3UTR	ENST00000377799	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377799	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377766	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000412821	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000358282	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000351358	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000457442	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000452380	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000322191		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000342512		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000371774		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000307534		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000488990	ENST00000488482		ChiTaRS3.1			BF827370	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000395170	ENST00000395170		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000395170	ENST00000547306		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000395170	ENST00000316299		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000395170	ENST00000548065		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-intron	ENST00000395170	ENST00000552212		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000547306	ENST00000395170		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000547306	ENST00000547306		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000547306	ENST00000316299		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000547306	ENST00000548065		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-intron	ENST00000547306	ENST00000552212		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000316299	ENST00000395170		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000316299	ENST00000547306		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000316299	ENST00000316299		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000316299	ENST00000548065		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-intron	ENST00000316299	ENST00000552212		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000548065	ENST00000395170		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000548065	ENST00000547306		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000548065	ENST00000316299		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000548065	ENST00000548065		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-intron	ENST00000548065	ENST00000552212		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000552212	ENST00000395170		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000552212	ENST00000547306		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000552212	ENST00000316299		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-3UTR	ENST00000552212	ENST00000548065		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-intron	ENST00000552212	ENST00000552212		ChiTaRS3.1			BQ306910	PRKAG1	chr12	49396132	-	PRKAG1	chr12	49396338	+
intron-intron	ENST00000379719	ENST00000370318		ChiTaRS3.1			BF878960	IPO7	chr11	9454372	+	MB21D1	chr6	74148800	+
intron-intron	ENST00000379719	ENST00000370315		ChiTaRS3.1			BF878960	IPO7	chr11	9454372	+	MB21D1	chr6	74148800	+
intron-intron	ENST00000533680	ENST00000370318		ChiTaRS3.1			BF878960	IPO7	chr11	9454372	+	MB21D1	chr6	74148800	+
intron-intron	ENST00000533680	ENST00000370315		ChiTaRS3.1			BF878960	IPO7	chr11	9454372	+	MB21D1	chr6	74148800	+
3UTR-3UTR	ENST00000254846	ENST00000254846		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
3UTR-3UTR	ENST00000254846	ENST00000448097		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
3UTR-intron	ENST00000254846	ENST00000572030		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-3UTR	ENST00000448097	ENST00000254846		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-3UTR	ENST00000448097	ENST00000448097		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-intron	ENST00000448097	ENST00000572030		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-3UTR	ENST00000572030	ENST00000254846		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-3UTR	ENST00000572030	ENST00000448097		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-intron	ENST00000572030	ENST00000572030		ChiTaRS3.1			BM722420	KDM6B	chr17	7757703	-	KDM6B	chr17	7756946	+
intron-intron	ENST00000553432	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553432	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553432	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000553432	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553432	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553432	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553432	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000553432	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553432	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000557376	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000557376	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000557376	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000553299	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000553299	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000553299	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-3UTR	ENST00000335281	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-3UTR	ENST00000335281	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000335281	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000555472	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000555472	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000555472	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000556766	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000556766	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000556766	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000554736	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000554736	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554736	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-3UTR	ENST00000556752	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-3UTR	ENST00000556752	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
3UTR-intron	ENST00000556752	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000553432		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000557376		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000553299		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000554875	ENST00000335281		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000555472		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000556766		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000554736		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-3UTR	ENST00000554875	ENST00000556752		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000554875	ENST00000554875		ChiTaRS3.1			BF886210	GNG2	chr14	52435791	-	GNG2	chr14	52435844	+
intron-intron	ENST00000590898	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000590898	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000590898	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000590898	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000590898	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000590898	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000590898	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000399022	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000337059	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000357384	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588737	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000319040	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000590898		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000399022		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000337059		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000357384		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000588737		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000319040		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-intron	ENST00000588459	ENST00000588459		ChiTaRS3.1			CA944610	RPRD1A	chr18	33605374	+	RPRD1A	chr18	33605413	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766340	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766340	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000418115	ENST00000344442		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000418115	ENST00000509061		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000418115	ENST00000324052		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000418115	ENST00000503898		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000454011	ENST00000344442		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000454011	ENST00000509061		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000454011	ENST00000324052		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000454011	ENST00000503898		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000422781	ENST00000344442		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000422781	ENST00000509061		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000422781	ENST00000324052		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000422781	ENST00000503898		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000265538	ENST00000344442		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000265538	ENST00000509061		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000265538	ENST00000324052		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000265538	ENST00000503898		ChiTaRS3.1			CN419690	RHOA	chr3	49412248	-	LARP7	chr4	113570842	-
intron-intron	ENST00000261588	ENST00000519476		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000261588	ENST00000297720		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000261588	ENST00000524874		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000261588	ENST00000379957		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000261588	ENST00000523983		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000261588	ENST00000527710		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000261588	ENST00000528827		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000519476		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000297720		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000524874		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000379957		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000523983		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000527710		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-intron	ENST00000567894	ENST00000528827		ChiTaRS3.1			BC071610	KIAA0556	chr16	27767073	+	LETM2	chr8	38264005	+
intron-3CDS	ENST00000488324	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000488324	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000488324	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000488324	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000399199	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000399199	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000399199	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000399199	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000274853	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000274853	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000274853	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000274853	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000498031	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000498031	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000498031	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000498031	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000444206	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000444206	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000444206	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000444206	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438815	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438815	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438815	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438815	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000552716	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000552716	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000552716	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000552716	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000491628	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000491628	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000491628	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000491628	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435929	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435929	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435929	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435929	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000412189	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000412189	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000412189	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000412189	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000548255	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000548255	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000548255	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000548255	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000493833	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000493833	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000493833	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000493833	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438945	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438945	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438945	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000438945	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000455935	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000455935	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000455935	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000455935	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551049	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551049	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551049	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551049	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000472334	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000472334	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000472334	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000472334	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000451544	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000451544	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000451544	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000451544	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000437121	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000437121	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000437121	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000437121	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551034	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551034	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551034	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551034	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000465704	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000465704	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000465704	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000465704	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000383573	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000383573	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000383573	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000383573	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000400554	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000400554	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000400554	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000400554	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000550073	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000550073	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000550073	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000550073	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000492746	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000492746	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000492746	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000492746	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000449705	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000449705	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000449705	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000449705	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000443517	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000443517	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000443517	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000443517	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551784	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551784	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551784	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000551784	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000487859	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000487859	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000487859	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000487859	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435006	ENST00000361887		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435006	ENST00000439251		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435006	ENST00000452693		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-3CDS	ENST00000435006	ENST00000535214		ChiTaRS3.1			BX392220	PPP1R18	chr6	1976835	+	PNMA5	chrX	152159705	+
intron-intron	ENST00000390237	ENST00000348520		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000380038		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000389744		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000557575		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000553286		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000347839		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000555836		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000334553		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000246489		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000557450		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000554280		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000452929		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-intron	ENST00000390237	ENST00000445352		ChiTaRS3.1			AA864910	IGKC	chr2	89156987	+	KLC1	chr14	104149549	-
intron-3UTR	ENST00000429124	ENST00000313486		ChiTaRS3.1			BQ329410	FTX	chrX	73491606	-	PITPNA	chr17	1422784	-
intron-3UTR	ENST00000429124	ENST00000539476		ChiTaRS3.1			BQ329410	FTX	chrX	73491606	-	PITPNA	chr17	1422784	-
intron-intron	ENST00000494188	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000494188	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-intron	ENST00000409892	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000409892	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-intron	ENST00000409784	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000409784	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-intron	ENST00000398529	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000398529	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-intron	ENST00000409751	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000409751	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-intron	ENST00000260638	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000260638	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-intron	ENST00000356214	ENST00000235345		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000356214	ENST00000506472		ChiTaRS3.1			BE773550	RAB1A	chr2	65315326	-	SLC35D1	chr1	67473236	-
intron-3UTR	ENST00000369026	ENST00000369026		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-intron	ENST00000369026	ENST00000464132		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-intron	ENST00000369026	ENST00000307940		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-3UTR	ENST00000464132	ENST00000369026		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-intron	ENST00000464132	ENST00000464132		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-intron	ENST00000464132	ENST00000307940		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-3UTR	ENST00000307940	ENST00000369026		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-intron	ENST00000307940	ENST00000464132		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-intron	ENST00000307940	ENST00000307940		ChiTaRS3.1			BI491020	MCL1	chr1	150547234	+	MCL1	chr1	150547280	-
intron-3CDS	ENST00000359370	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000359370	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000359370	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000359370	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000359370	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000359370	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000359370	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000359370	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000378046	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000378046	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000378046	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000378046	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000378046	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000378046	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000378046	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000378046	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000337706	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000337706	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000337706	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000337706	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000337706	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000337706	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000337706	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000337706	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000360966	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000360966	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000360966	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000360966	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000360966	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000360966	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000360966	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000360966	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000407758	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000407758	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000407758	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000407758	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000407758	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000407758	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000407758	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000407758	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000419524	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000419524	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000419524	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000419524	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000419524	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000419524	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000419524	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000419524	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000494579	ENST00000438132		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000494579	ENST00000542263		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000494579	ENST00000417362		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000494579	ENST00000251143		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000494579	ENST00000543152		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-3CDS	ENST00000494579	ENST00000448695		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000494579	ENST00000544275		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000494579	ENST00000538853		ChiTaRS3.1			DA205510	FGF1	chr5	141980340	-	C16orf62	chr16	19641112	+
intron-intron	ENST00000336199	ENST00000336199		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000366540		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000366539		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000263826		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000492957		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000336199		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000366540		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000366539		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000263826		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000492957		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000336199		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000366540		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000366539		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000263826		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000492957		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000336199		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000366540		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000366539		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000263826		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000492957		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000336199		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000366540		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000366539		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000263826		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000492957		ChiTaRS3.1			AW901930	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000404234	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000404234	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000529632	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000360929	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000248933	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000343706	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000402979	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000403121	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000411842	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000404234		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000529632		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000360929		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000248933		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000343706		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000402979		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000403121		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000411842		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000494013	ENST00000494013		ChiTaRS3.1			BF923760	SEZ6L	chr22	26632118	-	SEZ6L	chr22	26632482	+
intron-intron	ENST00000381655	ENST00000262093		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000381655	ENST00000382873		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000381655	ENST00000585699		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000255283	ENST00000262093		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000255283	ENST00000382873		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000255283	ENST00000585699		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000491840	ENST00000262093		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000491840	ENST00000382873		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
intron-intron	ENST00000491840	ENST00000585699		ChiTaRS3.1			CV398410	ATP8A2	chr13	26480254	+	FECH	chr18	55226544	+
Frame-shit	ENST00000374550	ENST00000272167		ChiTaRS3.1			BE613010	RPL11	chr1	24020323	-	EPHX1	chr1	226027547	+
Frame-shit	ENST00000374550	ENST00000366837		ChiTaRS3.1			BE613010	RPL11	chr1	24020323	-	EPHX1	chr1	226027547	+
5CDS-intron	ENST00000374550	ENST00000467015		ChiTaRS3.1			BE613010	RPL11	chr1	24020323	-	EPHX1	chr1	226027547	+
3UTR-3CDS	ENST00000482370	ENST00000272167		ChiTaRS3.1			BE613010	RPL11	chr1	24020323	-	EPHX1	chr1	226027547	+
3UTR-3CDS	ENST00000482370	ENST00000366837		ChiTaRS3.1			BE613010	RPL11	chr1	24020323	-	EPHX1	chr1	226027547	+
3UTR-intron	ENST00000482370	ENST00000467015		ChiTaRS3.1			BE613010	RPL11	chr1	24020323	-	EPHX1	chr1	226027547	+
intron-3CDS	ENST00000556029	ENST00000432884		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000556029	ENST00000262942		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000556029	ENST00000471960		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000343315	ENST00000432884		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000343315	ENST00000262942		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000343315	ENST00000471960		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3CDS	ENST00000266732	ENST00000432884		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3CDS	ENST00000266732	ENST00000262942		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3UTR	ENST00000266732	ENST00000471960		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000393053	ENST00000432884		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000393053	ENST00000262942		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000393053	ENST00000471960		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000261210	ENST00000432884		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000261210	ENST00000262942		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000261210	ENST00000471960		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000548223	ENST00000432884		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000548223	ENST00000262942		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000548223	ENST00000471960		ChiTaRS3.1			AW821160	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-intron	ENST00000359947	ENST00000359947		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000359947	ENST00000438120		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000359947	ENST00000372413		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000359947	ENST00000372414		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000359947	ENST00000422171		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000359947	ENST00000496447		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000438120	ENST00000359947		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000438120	ENST00000438120		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-3UTR	ENST00000438120	ENST00000372413		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-3UTR	ENST00000438120	ENST00000372414		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000438120	ENST00000422171		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000438120	ENST00000496447		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372413	ENST00000359947		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372413	ENST00000438120		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000372413	ENST00000372413		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000372413	ENST00000372414		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372413	ENST00000422171		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372413	ENST00000496447		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372414	ENST00000359947		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372414	ENST00000438120		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000372414	ENST00000372413		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000372414	ENST00000372414		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372414	ENST00000422171		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000372414	ENST00000496447		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000422171	ENST00000359947		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000422171	ENST00000438120		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-3UTR	ENST00000422171	ENST00000372413		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-3UTR	ENST00000422171	ENST00000372414		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000422171	ENST00000422171		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000422171	ENST00000496447		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000496447	ENST00000359947		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000496447	ENST00000438120		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000496447	ENST00000372413		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-3UTR	ENST00000496447	ENST00000372414		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000496447	ENST00000422171		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
3UTR-intron	ENST00000496447	ENST00000496447		ChiTaRS3.1			AA527940	PTPRF	chr1	44089185	+	PTPRF	chr1	44089335	-
intron-intron	ENST00000312838	ENST00000441293		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000314728		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000347697		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000395618		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000575595		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000395620		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000395626		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000312838	ENST00000571254		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000441293		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000314728		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000347697		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000395618		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000575595		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000395620		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000395626		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000537718	ENST00000571254		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000441293		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000314728		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000347697		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000395618		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000575595		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000395620		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000395626		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000541206	ENST00000571254		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000441293		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000314728		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000347697		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000395618		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000575595		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000395620		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000395626		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000568683	ENST00000571254		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000441293		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000314728		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000347697		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000395618		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000575595		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000395620		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000395626		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000567844	ENST00000571254		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000441293		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000314728		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000347697		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000395618		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000575595		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000395620		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000395626		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-intron	ENST00000562499	ENST00000571254		ChiTaRS3.1			BF870800	RNF166	chr16	88766131	+	EPN2	chr17	19209450	-
intron-3CDS	ENST00000378198	ENST00000378198		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000378198	ENST00000545995		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000378198	ENST00000341060		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-intron	ENST00000378198	ENST00000478285		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000545995	ENST00000378198		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000545995	ENST00000545995		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000545995	ENST00000341060		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-intron	ENST00000545995	ENST00000478285		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000341060	ENST00000378198		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000341060	ENST00000545995		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000341060	ENST00000341060		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-intron	ENST00000341060	ENST00000478285		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000478285	ENST00000378198		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000478285	ENST00000545995		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000478285	ENST00000341060		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-intron	ENST00000478285	ENST00000478285		ChiTaRS3.1			BG896990	TDP2	chr6	24650692	+	TDP2	chr6	24651044	-
intron-3CDS	ENST00000263856	ENST00000263856		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000263856	ENST00000409727		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000263856	ENST00000409225		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000263856	ENST00000439940		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-5UTR	ENST00000263856	ENST00000494623		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409727	ENST00000263856		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409727	ENST00000409727		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409727	ENST00000409225		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409727	ENST00000439940		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-5UTR	ENST00000409727	ENST00000494623		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409225	ENST00000263856		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409225	ENST00000409727		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409225	ENST00000409225		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000409225	ENST00000439940		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-5UTR	ENST00000409225	ENST00000494623		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000439940	ENST00000263856		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000439940	ENST00000409727		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000439940	ENST00000409225		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000439940	ENST00000439940		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-5UTR	ENST00000439940	ENST00000494623		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000494623	ENST00000263856		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000494623	ENST00000409727		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000494623	ENST00000409225		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-3CDS	ENST00000494623	ENST00000439940		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
intron-5UTR	ENST00000494623	ENST00000494623		ChiTaRS3.1			BI051970	CHMP3	chr2	86732831	-	CHMP3	chr2	86734653	+
3UTR-3UTR	ENST00000266126	ENST00000266126		ChiTaRS3.1			CA945040	EIF2B2	chr14	75476110	-	EIF2B2	chr14	75476072	+
intron-intron	ENST00000520810	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000520810		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000416505		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000519735		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000520835		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000379708		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000518983		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000522147		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000522785		ChiTaRS3.1			CA436950	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000390168	ENST00000390168		ChiTaRS3.1			CB164280	H19	chr11	2017591	+	H19	chr11	2016921	-
intron-intron	ENST00000374316	ENST00000374316		ChiTaRS3.1			CB306680	ITPR3	chr6	33662107	+	ITPR3	chr6	33662444	-
intron-intron	ENST00000374316	ENST00000605930		ChiTaRS3.1			CB306680	ITPR3	chr6	33662107	+	ITPR3	chr6	33662444	-
intron-intron	ENST00000605930	ENST00000374316		ChiTaRS3.1			CB306680	ITPR3	chr6	33662107	+	ITPR3	chr6	33662444	-
intron-intron	ENST00000605930	ENST00000605930		ChiTaRS3.1			CB306680	ITPR3	chr6	33662107	+	ITPR3	chr6	33662444	-
3UTR-3CDS	ENST00000444782	ENST00000544484		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000444782	ENST00000357008		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000444782	ENST00000309577		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000444782	ENST00000544040		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-intron	ENST00000444782	ENST00000540960		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518025	ENST00000544484		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518025	ENST00000357008		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518025	ENST00000309577		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518025	ENST00000544040		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-intron	ENST00000518025	ENST00000540960		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000521367	ENST00000544484		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000521367	ENST00000357008		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000521367	ENST00000309577		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000521367	ENST00000544040		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-intron	ENST00000521367	ENST00000540960		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000297164	ENST00000544484		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000297164	ENST00000357008		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000297164	ENST00000309577		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000297164	ENST00000544040		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-intron	ENST00000297164	ENST00000540960		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518856	ENST00000544484		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518856	ENST00000357008		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518856	ENST00000309577		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-3CDS	ENST00000518856	ENST00000544040		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
3UTR-intron	ENST00000518856	ENST00000540960		ChiTaRS3.1			DB340550	RELL2	chr5	141020432	-	CHD4	chr12	6703793	+
intron-3UTR	ENST00000392038	ENST00000602402		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-intron	ENST00000392038	ENST00000376795		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-3UTR	ENST00000424901	ENST00000602402		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-intron	ENST00000424901	ENST00000376795		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-3UTR	ENST00000311278	ENST00000602402		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-intron	ENST00000311278	ENST00000376795		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-3UTR	ENST00000579047	ENST00000602402		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-intron	ENST00000579047	ENST00000376795		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-3UTR	ENST00000581582	ENST00000602402		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-intron	ENST00000581582	ENST00000376795		ChiTaRS3.1			BF996610	AKT2	chr19	40771152	-	DNAJC3	chr13	96445542	-
intron-intron	ENST00000257787	ENST00000433211		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000257787	ENST00000373744		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000257787	ENST00000545309		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000257787	ENST00000373735		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000420494	ENST00000433211		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000420494	ENST00000373744		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000420494	ENST00000545309		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000420494	ENST00000373735		ChiTaRS3.1			AF119870	AKIRIN2	chr6	88410027	-	CTNNA3	chr10	68914891	-
intron-intron	ENST00000449098	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000449098	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000320084	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000336053	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554969	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556142	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000554455	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000430246	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553753	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555914	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555309	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556628	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000555883	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556513	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000557201	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000553300	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000556897	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000449098		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000320084		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000336053		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000554969		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000556142		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000554455		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000430246		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000553753		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000555914		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000555309		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000556628		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000555883		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000556513		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000557201		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000553300		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000556897		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000420743	ENST00000420743		ChiTaRS3.1			AA807200	HNRNPC	chr14	21707036	+	HNRNPC	chr14	21706233	+
intron-intron	ENST00000378847	ENST00000450793		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000538141		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000380180		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000318007		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000437932		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000317968		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000542407		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000508216		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000514743		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000380176		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000359265		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000512274		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378847	ENST00000504489		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000450793		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000538141		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000380180		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000318007		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000437932		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000317968		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000542407		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000508216		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000514743		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000380176		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000359265		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000512274		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000487696	ENST00000504489		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000450793		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000538141		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000380180		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000318007		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000437932		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000317968		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000542407		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000508216		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000514743		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000380176		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000359265		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000512274		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-intron	ENST00000378845	ENST00000504489		ChiTaRS3.1			CV321930	CAMK1D	chr10	12699864	+	PDLIM5	chr4	95388729	+
intron-3UTR	ENST00000394936	ENST00000394936		ChiTaRS3.1			BF733880	PSAP	chr10	73577090	+	PSAP	chr10	73576914	-
intron-3UTR	ENST00000394936	ENST00000394934		ChiTaRS3.1			BF733880	PSAP	chr10	73577090	+	PSAP	chr10	73576914	-
intron-3UTR	ENST00000394934	ENST00000394936		ChiTaRS3.1			BF733880	PSAP	chr10	73577090	+	PSAP	chr10	73576914	-
intron-3UTR	ENST00000394934	ENST00000394934		ChiTaRS3.1			BF733880	PSAP	chr10	73577090	+	PSAP	chr10	73576914	-
intron-intron	ENST00000367879	ENST00000482518		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000367879	ENST00000392054		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000367879	ENST00000409462		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000367879	ENST00000392055		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000367879	ENST00000354069		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000372212	ENST00000482518		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000372212	ENST00000392054		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000372212	ENST00000409462		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000372212	ENST00000392055		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000372212	ENST00000354069		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000462329	ENST00000482518		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000462329	ENST00000392054		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000462329	ENST00000409462		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000462329	ENST00000392055		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000462329	ENST00000354069		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000469256	ENST00000482518		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000469256	ENST00000392054		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000469256	ENST00000409462		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000469256	ENST00000392055		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000469256	ENST00000354069		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000470820	ENST00000482518		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000470820	ENST00000392054		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000470820	ENST00000409462		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3UTR	ENST00000470820	ENST00000392055		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-intron	ENST00000470820	ENST00000354069		ChiTaRS3.1			BU929920	UCK2	chr1	165866628	-	PID1	chr2	229890125	+
intron-3CDS	ENST00000367511	ENST00000367511		ChiTaRS3.1			CA430470	FAM129A	chr1	184764723	+	FAM129A	chr1	184764657	-
intron-5UTR	ENST00000367511	ENST00000487074		ChiTaRS3.1			CA430470	FAM129A	chr1	184764723	+	FAM129A	chr1	184764657	-
intron-3CDS	ENST00000487074	ENST00000367511		ChiTaRS3.1			CA430470	FAM129A	chr1	184764723	+	FAM129A	chr1	184764657	-
intron-5UTR	ENST00000487074	ENST00000487074		ChiTaRS3.1			CA430470	FAM129A	chr1	184764723	+	FAM129A	chr1	184764657	-
In-frame	ENST00000313143	ENST00000313143		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
Frame-shit	ENST00000313143	ENST00000431765		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
5CDS-3UTR	ENST00000313143	ENST00000462665		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
In-frame	ENST00000431765	ENST00000313143		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
Frame-shit	ENST00000431765	ENST00000431765		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
5CDS-3UTR	ENST00000431765	ENST00000462665		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
3UTR-3CDS	ENST00000462665	ENST00000313143		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
3UTR-3CDS	ENST00000462665	ENST00000431765		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
3UTR-3UTR	ENST00000462665	ENST00000462665		ChiTaRS3.1			BI031840	DVL3	chr3	183882329	-	DVL3	chr3	183873469	+
intron-intron	ENST00000331373	ENST00000301067		ChiTaRS3.1			BF763960	POMK	chr8	42955440	-	KMT2D	chr19	36225385	-
intron-intron	ENST00000331373	ENST00000549743		ChiTaRS3.1			BF763960	POMK	chr8	42955440	-	KMT2D	chr19	36225385	-
intron-intron	ENST00000552828	ENST00000248600		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000552828	ENST00000359697		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000552828	ENST00000340062		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000552828	ENST00000360591		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000552828	ENST00000431581		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000552828	ENST00000451157		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000552828	ENST00000460184		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000248600		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000359697		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000340062		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000360591		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000431581		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000451157		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
intron-intron	ENST00000378026	ENST00000460184		ChiTaRS3.1			BF902200	CKAP4	chr12	106633770	-	STYXL1	chr7	75662949	-
3UTR-3CDS	ENST00000439590	ENST00000439590		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000439590	ENST00000311111		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000439590	ENST00000584577		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000439590	ENST00000534490		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000439590	ENST00000533498		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000311111	ENST00000439590		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000311111	ENST00000311111		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000311111	ENST00000584577		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000311111	ENST00000534490		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000311111	ENST00000533498		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000584577	ENST00000439590		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000584577	ENST00000311111		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000584577	ENST00000584577		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000584577	ENST00000534490		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000584577	ENST00000533498		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
intron-3CDS	ENST00000534490	ENST00000439590		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
intron-3CDS	ENST00000534490	ENST00000311111		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
intron-3CDS	ENST00000534490	ENST00000584577		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
intron-3CDS	ENST00000534490	ENST00000534490		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
intron-3CDS	ENST00000534490	ENST00000533498		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000533498	ENST00000439590		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000533498	ENST00000311111		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000533498	ENST00000584577		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000533498	ENST00000534490		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
3UTR-3CDS	ENST00000533498	ENST00000533498		ChiTaRS3.1			BM968470	RPL38	chr17	72205973	-	RPL38	chr17	72205326	+
intron-3UTR	ENST00000368868	ENST00000253251		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000368868	ENST00000377157		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000368868	ENST00000343090		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000368868	ENST00000377153		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000368868	ENST00000475795		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000447402	ENST00000253251		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000447402	ENST00000377157		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000447402	ENST00000343090		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000447402	ENST00000377153		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000447402	ENST00000475795		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000426705	ENST00000253251		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000426705	ENST00000377157		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000426705	ENST00000343090		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000426705	ENST00000377153		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000426705	ENST00000475795		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000435071	ENST00000253251		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000435071	ENST00000377157		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000435071	ENST00000343090		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000435071	ENST00000377153		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000435071	ENST00000475795		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000473693	ENST00000253251		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000473693	ENST00000377157		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000473693	ENST00000343090		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000473693	ENST00000377153		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-intron	ENST00000473693	ENST00000475795		ChiTaRS3.1			AA176720	SELENBP1	chr1	151337133	+	UBE4B	chr1	10240338	+
intron-3UTR	ENST00000366684	ENST00000437099		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000323816		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000432992		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000540214		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000585266		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000580865		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-intron	ENST00000366684	ENST00000583882		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000542249		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000396115		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366684	ENST00000579158		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-intron	ENST00000366684	ENST00000578655		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000437099		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000323816		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000432992		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000540214		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000585266		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000580865		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-intron	ENST00000366683	ENST00000583882		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000542249		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000396115		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-3UTR	ENST00000366683	ENST00000579158		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
intron-intron	ENST00000366683	ENST00000578655		ChiTaRS3.1			BG998390	ACTA1	chr1	229567292	-	GAS7	chr17	9820514	+
5CDS-intron	ENST00000508628	ENST00000508628		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000508628	ENST00000456466		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000508628	ENST00000582970		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000508628	ENST00000319921		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000508628	ENST00000336301		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000508628	ENST00000427003		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000456466	ENST00000508628		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000456466	ENST00000456466		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000456466	ENST00000582970		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000456466	ENST00000319921		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000456466	ENST00000336301		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000456466	ENST00000427003		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000582970	ENST00000508628		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000582970	ENST00000456466		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000582970	ENST00000582970		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000582970	ENST00000319921		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000582970	ENST00000336301		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000582970	ENST00000427003		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000319921	ENST00000508628		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000319921	ENST00000456466		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000319921	ENST00000582970		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000319921	ENST00000319921		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000319921	ENST00000336301		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-intron	ENST00000319921	ENST00000427003		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000336301	ENST00000508628		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000336301	ENST00000456466		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000336301	ENST00000582970		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000336301	ENST00000319921		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000336301	ENST00000336301		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
5CDS-intron	ENST00000336301	ENST00000427003		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
3UTR-intron	ENST00000427003	ENST00000508628		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
3UTR-intron	ENST00000427003	ENST00000456466		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
3UTR-intron	ENST00000427003	ENST00000582970		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
3UTR-intron	ENST00000427003	ENST00000319921		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
3UTR-intron	ENST00000427003	ENST00000336301		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
3UTR-intron	ENST00000427003	ENST00000427003		ChiTaRS3.1			BQ364650	RNF213	chr17	78360691	+	RNF213	chr17	78355657	+
intron-3UTR	ENST00000256682	ENST00000570101		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000256682	ENST00000219320		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000256682	ENST00000564100		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000256682	ENST00000564010		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000256682	ENST00000566953		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000256682	ENST00000564391		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000447318	ENST00000570101		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000447318	ENST00000219320		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000447318	ENST00000564100		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000447318	ENST00000564010		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000447318	ENST00000566953		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000447318	ENST00000564391		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000541959	ENST00000570101		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000541959	ENST00000219320		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000541959	ENST00000564100		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000541959	ENST00000564010		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000541959	ENST00000566953		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000541959	ENST00000564391		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000541967	ENST00000570101		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000541967	ENST00000219320		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000541967	ENST00000564100		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000541967	ENST00000564010		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000541967	ENST00000566953		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-intron	ENST00000541967	ENST00000564391		ChiTaRS3.1			BG001600	ARF3	chr12	49333517	+	SLC38A7	chr16	58700712	-
intron-3UTR	ENST00000356113	ENST00000504032		ChiTaRS3.1			AI114700	LIPC	chr15	58860913	-	UGDH-AS1	chr4	39594408	-
intron-3UTR	ENST00000414170	ENST00000504032		ChiTaRS3.1			AI114700	LIPC	chr15	58860913	-	UGDH-AS1	chr4	39594408	-
intron-3UTR	ENST00000299022	ENST00000504032		ChiTaRS3.1			AI114700	LIPC	chr15	58860913	-	UGDH-AS1	chr4	39594408	-
intron-3UTR	ENST00000433326	ENST00000504032		ChiTaRS3.1			AI114700	LIPC	chr15	58860913	-	UGDH-AS1	chr4	39594408	-
3UTR-intron	ENST00000466801	ENST00000474362		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000374721		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000489388		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000374726		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000429130		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000469949		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000460270		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000354759		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000489321		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000395895		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000374728		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000345491		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000333809		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000439705		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000337656		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000374734		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000479070		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000348787		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000361599		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000484283		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000395887		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000463314		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000342105		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000463960		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000487763		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000473940		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000488328		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000356917		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000488741		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000474931		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000468236		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000344351		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
3UTR-intron	ENST00000466801	ENST00000490511		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000474362		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000374721		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000489388		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000374726		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000429130		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000469949		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000460270		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000354759		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000489321		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000395895		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000374728		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000345491		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000333809		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000439705		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000337656		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000374734		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000479070		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000348787		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000361599		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000484283		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000395887		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000463314		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000342105		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000463960		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000487763		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000473940		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000488328		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000356917		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000488741		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000474931		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000468236		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000344351		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409321	ENST00000490511		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000474362		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000374721		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000489388		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000374726		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000429130		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000469949		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000460270		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000354759		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000489321		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000395895		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000374728		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000345491		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000333809		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000439705		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000337656		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000374734		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000479070		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000348787		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000361599		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000484283		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000395887		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000463314		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000342105		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000463960		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000487763		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000473940		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000488328		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000356917		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000488741		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000474931		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000468236		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000344351		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409115	ENST00000490511		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000474362		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000374721		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000489388		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000374726		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000429130		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000469949		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000460270		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000354759		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000489321		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000395895		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000374728		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000345491		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000333809		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000439705		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000337656		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000374734		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000479070		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000348787		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000361599		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000484283		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000395887		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000463314		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000342105		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000463960		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000487763		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000473940		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000488328		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000356917		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000488741		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000474931		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000468236		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000344351		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000341369	ENST00000490511		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000474362		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000374721		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000489388		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000374726		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000429130		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000469949		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000460270		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000354759		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000489321		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000395895		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000374728		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000345491		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000333809		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000439705		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000337656		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000374734		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000479070		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000348787		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000361599		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000484283		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000395887		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000463314		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000342105		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000463960		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000487763		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000473940		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000488328		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000356917		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000488741		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000474931		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000468236		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000344351		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000409683	ENST00000490511		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000474362		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000374721		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000489388		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000374726		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000429130		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000469949		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000460270		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000354759		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000489321		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000395895		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000374728		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000345491		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000333809		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000439705		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000337656		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000374734		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000479070		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000348787		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000361599		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000484283		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000395887		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000463314		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000342105		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000463960		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000487763		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000473940		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000488328		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000356917		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000488741		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000474931		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000468236		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000344351		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
5CDS-intron	ENST00000410064	ENST00000490511		ChiTaRS3.1			CB985250	PTMA	chr2	232576688	+	CREM	chr10	35500204	+
intron-3UTR	ENST00000544236	ENST00000393038		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000544236	ENST00000537860		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000544236	ENST00000409433		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000544236	ENST00000470557		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-intron	ENST00000544236	ENST00000579915		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000542987	ENST00000393038		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000542987	ENST00000537860		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000542987	ENST00000409433		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000542987	ENST00000470557		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-intron	ENST00000542987	ENST00000579915		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000338121	ENST00000393038		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000338121	ENST00000537860		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000338121	ENST00000409433		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000338121	ENST00000470557		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-intron	ENST00000338121	ENST00000579915		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000377051	ENST00000393038		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000377051	ENST00000537860		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000377051	ENST00000409433		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-3UTR	ENST00000377051	ENST00000470557		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
3UTR-intron	ENST00000377051	ENST00000579915		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000461789	ENST00000393038		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000461789	ENST00000537860		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000461789	ENST00000409433		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-3UTR	ENST00000461789	ENST00000470557		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-intron	ENST00000461789	ENST00000579915		ChiTaRS3.1			CB243150	GZF1	chr20	23352809	-	PTRH2	chr17	57774776	-
intron-intron	ENST00000369582	ENST00000361246		ChiTaRS3.1			R02040	CGA	chr6	87795326	+	CDC42BPB	chr14	103488300	+
intron-intron	ENST00000303113	ENST00000303113		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303113	ENST00000453626		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303113	ENST00000303071		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303113	ENST00000432378		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000303113		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000453626		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000303071		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000432378		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000303113		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000453626		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000303071		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000432378		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000303113		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000453626		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000303071		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000432378		ChiTaRS3.1			BF763320	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-3UTR	ENST00000264021	ENST00000379440		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000264021	ENST00000430350		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000264020	ENST00000379440		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000264020	ENST00000430350		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000530872	ENST00000379440		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000530872	ENST00000430350		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000527868	ENST00000379440		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
intron-3UTR	ENST00000527868	ENST00000430350		ChiTaRS3.1			AA774840	IFT46	chr11	64874813	-	PRNP	chr20	4681705	-
In-frame	ENST00000283558	ENST00000268482		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000283558	ENST00000536867		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000375630	ENST00000268482		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000375630	ENST00000536867		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000487903	ENST00000268482		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000487903	ENST00000536867		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000375645	ENST00000268482		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
In-frame	ENST00000375645	ENST00000536867		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
intron-3CDS	ENST00000419448	ENST00000268482		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
intron-3CDS	ENST00000419448	ENST00000536867		ChiTaRS3.1			BF927490	ATP11A	chr13	113514665	+	DHX38	chr16	72130264	-
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394464	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000415690		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000424646		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			AA730920	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000354577	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000354577		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000403834		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368068		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000479213		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368060		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368058		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000545957		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368053		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000540546		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000539158		ChiTaRS3.1			AA648640	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-3CDS	ENST00000462138	ENST00000238571		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000462138	ENST00000325680		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000462138	ENST00000552421		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000462138	ENST00000546901		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423525	ENST00000238571		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423525	ENST00000325680		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423525	ENST00000552421		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000423525	ENST00000546901		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000461139	ENST00000238571		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000461139	ENST00000325680		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000461139	ENST00000552421		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000461139	ENST00000546901		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423516	ENST00000238571		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423516	ENST00000325680		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423516	ENST00000552421		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000423516	ENST00000546901		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000296289	ENST00000238571		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000296289	ENST00000325680		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000296289	ENST00000552421		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000296289	ENST00000546901		ChiTaRS3.1			BE741860	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000392011	ENST00000392011		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000392011	ENST00000409212		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000392011	ENST00000344528		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000392011	ENST00000489601		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000409212	ENST00000392011		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000409212	ENST00000409212		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000409212	ENST00000344528		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000409212	ENST00000489601		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000344528	ENST00000392011		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000344528	ENST00000409212		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000344528	ENST00000344528		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000344528	ENST00000489601		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000489601	ENST00000392011		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000489601	ENST00000409212		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000489601	ENST00000344528		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-intron	ENST00000489601	ENST00000489601		ChiTaRS3.1			T56440	SH3BP4	chr2	235928329	-	SH3BP4	chr2	235931943	-
intron-3CDS	ENST00000332050	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000371564		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000396009		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000609943		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000610033		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000414705		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000609507		ChiTaRS3.1			FJ573261	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3UTR	ENST00000555699	ENST00000265077		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000555699	ENST00000342785		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000555699	ENST00000343200		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000555699	ENST00000512590		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000555699	ENST00000502527		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000555699	ENST00000513016		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000555699	ENST00000513984		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000334869	ENST00000265077		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000334869	ENST00000342785		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000334869	ENST00000343200		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000334869	ENST00000512590		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000334869	ENST00000502527		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000334869	ENST00000513016		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000334869	ENST00000513984		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557434	ENST00000265077		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557434	ENST00000342785		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557434	ENST00000343200		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557434	ENST00000512590		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000557434	ENST00000502527		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557434	ENST00000513016		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000557434	ENST00000513984		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000393218	ENST00000265077		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000393218	ENST00000342785		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000393218	ENST00000343200		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000393218	ENST00000512590		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000393218	ENST00000502527		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000393218	ENST00000513016		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000393218	ENST00000513984		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557034	ENST00000265077		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557034	ENST00000342785		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557034	ENST00000343200		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557034	ENST00000512590		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000557034	ENST00000502527		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3UTR	ENST00000557034	ENST00000513016		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-intron	ENST00000557034	ENST00000513984		ChiTaRS3.1			BP392190	LGMN	chr14	93178052	+	VCAN	chr5	82876748	+
intron-3CDS	ENST00000358823	ENST00000358823		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000358823	ENST00000413307		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000358823	ENST00000236925		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000413307	ENST00000358823		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000413307	ENST00000413307		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000413307	ENST00000236925		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000236925	ENST00000358823		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000236925	ENST00000413307		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-3CDS	ENST00000236925	ENST00000236925		ChiTaRS3.1			BU189980	CAMSAP2	chr1	200817158	-	CAMSAP2	chr1	200817182	+
intron-intron	ENST00000464611	ENST00000464611		ChiTaRS3.1			BI019850	ACTB	chr7	5568158	+	ACTB	chr7	5567767	+
intron-intron	ENST00000464611	ENST00000331789		ChiTaRS3.1			BI019850	ACTB	chr7	5568158	+	ACTB	chr7	5567767	+
intron-intron	ENST00000331789	ENST00000464611		ChiTaRS3.1			BI019850	ACTB	chr7	5568158	+	ACTB	chr7	5567767	+
intron-intron	ENST00000331789	ENST00000331789		ChiTaRS3.1			BI019850	ACTB	chr7	5568158	+	ACTB	chr7	5567767	+
3UTR-intron	ENST00000328252	ENST00000338564		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000561208		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000397624		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000382766		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000444725		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000340545		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000559085		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000219869		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000557796		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000397620		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000424352		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000559561		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
3UTR-intron	ENST00000328252	ENST00000559408		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000338564		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000561208		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000397624		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000382766		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000444725		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000340545		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000559085		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000219869		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000557796		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000397620		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000424352		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000559561		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000534838	ENST00000559408		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000338564		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000561208		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000397624		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000382766		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000444725		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000340545		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000559085		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000219869		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000557796		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000397620		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000424352		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000559561		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000483254	ENST00000559408		ChiTaRS3.1			AA368320	PAPPA	chr9	119159249	-	MEIS2	chr15	37324651	-
intron-intron	ENST00000515408	ENST00000515408		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-3UTR	ENST00000515408	ENST00000389063		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000515408	ENST00000543319		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000515408	ENST00000504961		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
3UTR-intron	ENST00000389063	ENST00000515408		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
3UTR-3UTR	ENST00000389063	ENST00000389063		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
3UTR-intron	ENST00000389063	ENST00000543319		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
3UTR-intron	ENST00000389063	ENST00000504961		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000543319	ENST00000515408		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-3UTR	ENST00000543319	ENST00000389063		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000543319	ENST00000543319		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000543319	ENST00000504961		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000504961	ENST00000515408		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-3UTR	ENST00000504961	ENST00000389063		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000504961	ENST00000543319		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
intron-intron	ENST00000504961	ENST00000504961		ChiTaRS3.1			CA945240	DCP2	chr5	112356465	-	DCP2	chr5	112356368	+
In-frame	ENST00000344691	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000344691	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000344691	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000344691	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000344691	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000344691	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000344691	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000344691	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000344691	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000344691	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000325074	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000325074	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000325074	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000325074	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000325074	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000325074	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000325074	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000325074	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000325074	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000325074	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000437180	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
Frame-shit	ENST00000437180	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000437180	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000437180	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000437180	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000437180	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000437180	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000437180	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000437180	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000437180	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000300305	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000300305	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000300305	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000300305	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000300305	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000300305	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000300305	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000300305	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000300305	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000300305	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000399240	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000399240	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000399240	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000399240	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000399240	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000399240	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000399240	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000399240	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000399240	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000399240	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000486278	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000486278	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000486278	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000486278	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000486278	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000486278	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000486278	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000486278	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000486278	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000486278	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-3CDS	ENST00000494829	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-3CDS	ENST00000494829	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000494829	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000494829	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000494829	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000494829	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000494829	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-5UTR	ENST00000494829	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-intron	ENST00000494829	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-intron	ENST00000494829	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000358356	ENST00000342704		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
In-frame	ENST00000358356	ENST00000375279		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000358356	ENST00000344201		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000358356	ENST00000397798		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000358356	ENST00000346541		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000358356	ENST00000397800		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000358356	ENST00000492345		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-5UTR	ENST00000358356	ENST00000359606		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000358356	ENST00000491618		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
5CDS-intron	ENST00000358356	ENST00000543126		ChiTaRS3.1			GU070940	RUNX1	chr21	36231771	-	CBFA2T2	chr20	32194762	+
intron-intron	ENST00000368124	ENST00000391918		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-3UTR	ENST00000368124	ENST00000291295		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000368124	ENST00000597743		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000368124	ENST00000477244		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000368124	ENST00000598871		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000368124	ENST00000594523		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-3UTR	ENST00000368124	ENST00000599839		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000368124	ENST00000596362		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000368125	ENST00000391918		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-3UTR	ENST00000368125	ENST00000291295		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000368125	ENST00000597743		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000368125	ENST00000477244		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000368125	ENST00000598871		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000368125	ENST00000594523		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-3UTR	ENST00000368125	ENST00000599839		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000368125	ENST00000596362		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000497636	ENST00000391918		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-3UTR	ENST00000497636	ENST00000291295		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000497636	ENST00000597743		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000497636	ENST00000477244		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000497636	ENST00000598871		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000497636	ENST00000594523		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-3UTR	ENST00000497636	ENST00000599839		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
intron-intron	ENST00000497636	ENST00000596362		ChiTaRS3.1			BF947810	CADM3	chr1	159172123	-	CALM3	chr19	47113040	+
3UTR-intron	ENST00000221466	ENST00000306107		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000221466	ENST00000472644		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000221466	ENST00000481337		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000221466	ENST00000486979		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000221466	ENST00000389927		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000426395	ENST00000306107		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000426395	ENST00000472644		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000426395	ENST00000481337		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000426395	ENST00000486979		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000426395	ENST00000389927		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
intron-intron	ENST00000594823	ENST00000306107		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
intron-intron	ENST00000594823	ENST00000472644		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
intron-intron	ENST00000594823	ENST00000481337		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
intron-intron	ENST00000594823	ENST00000486979		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
intron-intron	ENST00000594823	ENST00000389927		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000599988	ENST00000306107		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000599988	ENST00000472644		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000599988	ENST00000481337		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000599988	ENST00000486979		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000599988	ENST00000389927		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000596975	ENST00000306107		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000596975	ENST00000472644		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000596975	ENST00000481337		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000596975	ENST00000486979		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
3UTR-intron	ENST00000596975	ENST00000389927		ChiTaRS3.1			BE940440	FCGRT	chr19	50029419	-	ALCAM	chr3	105181722	-
Frame-shit	ENST00000249837	ENST00000249837		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000249837	ENST00000261517		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000249837	ENST00000395896		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000249837	ENST00000395898		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5CDS-intron	ENST00000249837	ENST00000558919		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000261517	ENST00000249837		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000261517	ENST00000261517		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000261517	ENST00000395896		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000261517	ENST00000395898		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5CDS-intron	ENST00000261517	ENST00000558919		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395896	ENST00000249837		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395896	ENST00000261517		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395896	ENST00000395896		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395896	ENST00000395898		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5CDS-intron	ENST00000395896	ENST00000558919		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395898	ENST00000249837		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395898	ENST00000261517		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395898	ENST00000395896		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
Frame-shit	ENST00000395898	ENST00000395898		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5CDS-intron	ENST00000395898	ENST00000558919		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5UTR-3CDS	ENST00000558919	ENST00000249837		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5UTR-3CDS	ENST00000558919	ENST00000261517		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5UTR-3CDS	ENST00000558919	ENST00000395896		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5UTR-3CDS	ENST00000558919	ENST00000395898		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5UTR-intron	ENST00000558919	ENST00000558919		ChiTaRS3.1			BQ335670	VPS13C	chr15	62170806	-	VPS13C	chr15	62182383	+
5CDS-3UTR	ENST00000356415	ENST00000356415		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-3UTR	ENST00000356415	ENST00000436150		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-3UTR	ENST00000356415	ENST00000369709		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-intron	ENST00000356415	ENST00000545460		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-intron	ENST00000356415	ENST00000494982		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000436150	ENST00000356415		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000436150	ENST00000436150		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000436150	ENST00000369709		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000436150	ENST00000545460		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000436150	ENST00000494982		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000369709	ENST00000356415		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000369709	ENST00000436150		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000369709	ENST00000369709		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000369709	ENST00000545460		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000369709	ENST00000494982		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000545460	ENST00000356415		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000545460	ENST00000436150		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000545460	ENST00000369709		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000545460	ENST00000545460		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000545460	ENST00000494982		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000494982	ENST00000356415		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000494982	ENST00000436150		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000494982	ENST00000369709		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000494982	ENST00000545460		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000494982	ENST00000494982		ChiTaRS3.1			AA525220	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3CDS	ENST00000194900	ENST00000356805		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000194900	ENST00000333896		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000374360	ENST00000356805		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000374360	ENST00000333896		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000374355	ENST00000356805		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000374355	ENST00000333896		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000542398	ENST00000356805		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000542398	ENST00000333896		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000461646	ENST00000356805		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000461646	ENST00000333896		ChiTaRS3.1			BE699000	DLG3	chrX	69691662	+	SPTBN1	chr2	54886342	-
intron-3CDS	ENST00000367137	ENST00000367137		ChiTaRS3.1			BF989690	SLC41A1	chr1	205779896	+	SLC41A1	chr1	205768902	+
intron-5UTR	ENST00000367137	ENST00000468057		ChiTaRS3.1			BF989690	SLC41A1	chr1	205779896	+	SLC41A1	chr1	205768902	+
intron-3CDS	ENST00000468057	ENST00000367137		ChiTaRS3.1			BF989690	SLC41A1	chr1	205779896	+	SLC41A1	chr1	205768902	+
intron-5UTR	ENST00000468057	ENST00000468057		ChiTaRS3.1			BF989690	SLC41A1	chr1	205779896	+	SLC41A1	chr1	205768902	+
intron-intron	ENST00000361246	ENST00000356462		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000400345		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000589054		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000256832		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000382850		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000256830		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000588516		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000456986		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000435432		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000357895		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000586263		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000456173		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
intron-intron	ENST00000361246	ENST00000431212		ChiTaRS3.1			BF834550	CDC42BPB	chr14	103432700	+	NEDD4L	chr18	56001124	+
Frame-shit	ENST00000261973	ENST00000261973		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000261973	ENST00000540173		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000261973	ENST00000527432		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000261973	ENST00000525321		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000261973	ENST00000526754		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000261973	ENST00000532483		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-3CDS	ENST00000540173	ENST00000261973		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000540173	ENST00000540173		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000540173	ENST00000527432		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000540173	ENST00000525321		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000540173	ENST00000526754		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000540173	ENST00000532483		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
Frame-shit	ENST00000527432	ENST00000261973		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000527432	ENST00000540173		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000527432	ENST00000527432		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000527432	ENST00000525321		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000527432	ENST00000526754		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
5CDS-intron	ENST00000527432	ENST00000532483		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-3CDS	ENST00000525321	ENST00000261973		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000525321	ENST00000540173		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000525321	ENST00000527432		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000525321	ENST00000525321		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000525321	ENST00000526754		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000525321	ENST00000532483		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-3CDS	ENST00000526754	ENST00000261973		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000526754	ENST00000540173		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000526754	ENST00000527432		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000526754	ENST00000525321		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000526754	ENST00000526754		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000526754	ENST00000532483		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
3UTR-3CDS	ENST00000532483	ENST00000261973		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
3UTR-intron	ENST00000532483	ENST00000540173		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
3UTR-intron	ENST00000532483	ENST00000527432		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
3UTR-intron	ENST00000532483	ENST00000525321		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
3UTR-intron	ENST00000532483	ENST00000526754		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
3UTR-intron	ENST00000532483	ENST00000532483		ChiTaRS3.1			AW382160	RBM25	chr14	73577612	+	RBM25	chr14	73572711	+
intron-intron	ENST00000367142	ENST00000535572		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000537687		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000315939		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000447667		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000530271		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000540360		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000340908		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000574564		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000535572		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000537687		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000315939		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000447667		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000530271		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000540360		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000340908		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000574564		ChiTaRS3.1			AI990890	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
3UTR-intron	ENST00000360472	ENST00000269141		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
3UTR-intron	ENST00000360472	ENST00000399380		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
intron-intron	ENST00000368077	ENST00000269141		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
intron-intron	ENST00000368077	ENST00000399380		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
3UTR-intron	ENST00000368076	ENST00000269141		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
3UTR-intron	ENST00000368076	ENST00000399380		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
intron-intron	ENST00000488858	ENST00000269141		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
intron-intron	ENST00000488858	ENST00000399380		ChiTaRS3.1			T06950	PEA15	chr1	160184816	+	CDH2	chr18	25573462	+
intron-3CDS	ENST00000304661	ENST00000304661		ChiTaRS3.1			T10800	C1GALT1C1	chrX	119760648	+	C1GALT1C1	chrX	119760634	-
intron-3CDS	ENST00000304661	ENST00000371313		ChiTaRS3.1			T10800	C1GALT1C1	chrX	119760648	+	C1GALT1C1	chrX	119760634	-
intron-3CDS	ENST00000371313	ENST00000304661		ChiTaRS3.1			T10800	C1GALT1C1	chrX	119760648	+	C1GALT1C1	chrX	119760634	-
intron-3CDS	ENST00000371313	ENST00000371313		ChiTaRS3.1			T10800	C1GALT1C1	chrX	119760648	+	C1GALT1C1	chrX	119760634	-
intron-3CDS	ENST00000379561	ENST00000025008		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-3CDS	ENST00000379561	ENST00000435644		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-intron	ENST00000379561	ENST00000521611		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-intron	ENST00000379561	ENST00000539297		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-3CDS	ENST00000473775	ENST00000025008		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-3CDS	ENST00000473775	ENST00000435644		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-intron	ENST00000473775	ENST00000521611		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
intron-intron	ENST00000473775	ENST00000539297		ChiTaRS3.1			BE767460	FOXO1	chr13	41134794	+	RB1CC1	chr8	53537330	-
5CDS-intron	ENST00000326427	ENST00000351960		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326427	ENST00000358965		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326427	ENST00000393695		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326427	ENST00000543450		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000335005	ENST00000351960		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000335005	ENST00000358965		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000335005	ENST00000393695		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000335005	ENST00000543450		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326407	ENST00000351960		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326407	ENST00000358965		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326407	ENST00000393695		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
5CDS-intron	ENST00000326407	ENST00000543450		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000409704	ENST00000351960		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000409704	ENST00000358965		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000409704	ENST00000393695		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000409704	ENST00000543450		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000492029	ENST00000351960		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000492029	ENST00000358965		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000492029	ENST00000393695		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000492029	ENST00000543450		ChiTaRS3.1			BE835080	ITM2C	chr2	231729800	-	NUMA1	chr11	71724549	+
intron-intron	ENST00000331925	ENST00000545244		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000331925	ENST00000421030		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000331925	ENST00000339553		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000331925	ENST00000472987		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000331925	ENST00000454855		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000331925	ENST00000409996		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000331925	ENST00000395690		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000545244		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000421030		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000339553		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000472987		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000454855		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000409996		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000573283	ENST00000395690		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000545244		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000421030		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000339553		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000472987		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000454855		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000409996		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575842	ENST00000395690		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000545244		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000421030		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000339553		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000472987		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000454855		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000409996		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-intron	ENST00000575087	ENST00000395690		ChiTaRS3.1			BF932930	ACTG1	chr17	79477407	+	MROH7	chr1	55126857	-
intron-3CDS	ENST00000393432	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000393432	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000442819	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000442819	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000356731	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000356731	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000329433	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000329433	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000510411	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000510411	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000511300	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000511300	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000524180	ENST00000317534		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-5UTR	ENST00000524180	ENST00000467084		ChiTaRS3.1			W51800	HNRNPH1	chr5	179048296	-	MRPS24	chr7	43906522	-
intron-3CDS	ENST00000343958	ENST00000395184		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000503995		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000506421		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000395183		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000264343		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-3CDS	ENST00000546711	ENST00000395184		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000503995		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000506421		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000395183		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000264343		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-3CDS	ENST00000549499	ENST00000395184		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000503995		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000506421		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000395183		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000264343		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-3CDS	ENST00000550368	ENST00000395184		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000503995		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000506421		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000395183		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000264343		ChiTaRS3.1			AW749210	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
5CDS-5UTR	ENST00000258484	ENST00000264474		ChiTaRS3.1			BE840750	EPC2	chr2	149528956	+	CSTA	chr3	122044130	+
5CDS-5UTR	ENST00000258484	ENST00000479204		ChiTaRS3.1			BE840750	EPC2	chr2	149528956	+	CSTA	chr3	122044130	+
intron-5UTR	ENST00000409654	ENST00000264474		ChiTaRS3.1			BE840750	EPC2	chr2	149528956	+	CSTA	chr3	122044130	+
intron-5UTR	ENST00000409654	ENST00000479204		ChiTaRS3.1			BE840750	EPC2	chr2	149528956	+	CSTA	chr3	122044130	+
3UTR-3UTR	ENST00000270645	ENST00000328252		ChiTaRS3.1			AW962470	RCN3	chr19	50046507	+	PAPPA	chr9	119163118	-
3UTR-intron	ENST00000270645	ENST00000534838		ChiTaRS3.1			AW962470	RCN3	chr19	50046507	+	PAPPA	chr9	119163118	-
3UTR-intron	ENST00000270645	ENST00000483254		ChiTaRS3.1			AW962470	RCN3	chr19	50046507	+	PAPPA	chr9	119163118	-
intron-3UTR	ENST00000593644	ENST00000328252		ChiTaRS3.1			AW962470	RCN3	chr19	50046507	+	PAPPA	chr9	119163118	-
intron-intron	ENST00000593644	ENST00000534838		ChiTaRS3.1			AW962470	RCN3	chr19	50046507	+	PAPPA	chr9	119163118	-
intron-intron	ENST00000593644	ENST00000483254		ChiTaRS3.1			AW962470	RCN3	chr19	50046507	+	PAPPA	chr9	119163118	-
intron-intron	ENST00000393923	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393923	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393923	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393923	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393923	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393923	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000412622	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000412622	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000412622	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000412622	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000412622	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000412622	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000431670	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000431670	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000431670	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000431670	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000431670	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000431670	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393925	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393925	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393925	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393925	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393925	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000393925	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000481953	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000481953	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000481953	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000481953	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000481953	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000481953	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000495180	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000495180	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000495180	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000495180	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000495180	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000495180	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000478922	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000478922	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000478922	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000478922	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000478922	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000478922	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000477695	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000477695	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000477695	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000477695	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000477695	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000477695	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000470699	ENST00000319592		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000470699	ENST00000381793		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000470699	ENST00000381795		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000470699	ENST00000295971		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000470699	ENST00000514014		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
intron-intron	ENST00000470699	ENST00000515809		ChiTaRS3.1			BE004180	PHLDB2	chr3	111680418	-	RBM47	chr4	40540279	-
3UTR-3UTR	ENST00000540664	ENST00000540664		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000540664	ENST00000371103		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000540664	ENST00000356016		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000540664	ENST00000371097		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000540664	ENST00000498444		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-3UTR	ENST00000371103	ENST00000540664		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371103	ENST00000371103		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371103	ENST00000356016		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371103	ENST00000371097		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371103	ENST00000498444		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-3UTR	ENST00000356016	ENST00000540664		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000356016	ENST00000371103		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000356016	ENST00000356016		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000356016	ENST00000371097		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000356016	ENST00000498444		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-3UTR	ENST00000371097	ENST00000540664		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371097	ENST00000371103		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371097	ENST00000356016		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371097	ENST00000371097		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
3UTR-intron	ENST00000371097	ENST00000498444		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
intron-3UTR	ENST00000498444	ENST00000540664		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
intron-intron	ENST00000498444	ENST00000371103		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
intron-intron	ENST00000498444	ENST00000356016		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
intron-intron	ENST00000498444	ENST00000371097		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
intron-intron	ENST00000498444	ENST00000498444		ChiTaRS3.1			AI684720	LCOR	chr10	98718494	-	LCOR	chr10	98719454	-
intron-3UTR	ENST00000356493	ENST00000376509		ChiTaRS3.1			BU730150	STOML2	chr9	35101012	+	PIM2	chrX	48770524	-
intron-intron	ENST00000356493	ENST00000485431		ChiTaRS3.1			BU730150	STOML2	chr9	35101012	+	PIM2	chrX	48770524	-
intron-3UTR	ENST00000452248	ENST00000376509		ChiTaRS3.1			BU730150	STOML2	chr9	35101012	+	PIM2	chrX	48770524	-
intron-intron	ENST00000452248	ENST00000485431		ChiTaRS3.1			BU730150	STOML2	chr9	35101012	+	PIM2	chrX	48770524	-
intron-3UTR	ENST00000487490	ENST00000376509		ChiTaRS3.1			BU730150	STOML2	chr9	35101012	+	PIM2	chrX	48770524	-
intron-intron	ENST00000487490	ENST00000485431		ChiTaRS3.1			BU730150	STOML2	chr9	35101012	+	PIM2	chrX	48770524	-
intron-intron	ENST00000517956	ENST00000441339		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000517956	ENST00000308946		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000517956	ENST00000535407		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000517956	ENST00000541137		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000441339		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000308946		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000535407		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000541137		ChiTaRS3.1			BF828660	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
3UTR-intron	ENST00000328252	ENST00000318842		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
3UTR-intron	ENST00000328252	ENST00000338898		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
3UTR-intron	ENST00000328252	ENST00000339363		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
3UTR-intron	ENST00000328252	ENST00000309513		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
3UTR-intron	ENST00000328252	ENST00000342811		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
3UTR-intron	ENST00000328252	ENST00000378505		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000534838	ENST00000318842		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000534838	ENST00000338898		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000534838	ENST00000339363		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000534838	ENST00000309513		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000534838	ENST00000342811		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000534838	ENST00000378505		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000483254	ENST00000318842		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000483254	ENST00000338898		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000483254	ENST00000339363		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000483254	ENST00000309513		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000483254	ENST00000342811		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000483254	ENST00000378505		ChiTaRS3.1			BQ365670	PAPPA	chr9	119162349	+	RPGR	chrX	38179260	+
intron-intron	ENST00000440768	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000440768	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000359197	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000343574	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000331340	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000349824	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000357364	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000346667	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000438033	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000439701	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000413698	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000440768		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000359197		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000343574		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000331340		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000349824		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000357364		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000346667		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000438033		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000439701		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000413698		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
intron-intron	ENST00000492782	ENST00000492782		ChiTaRS3.1			AI241390	IKZF1	chr7	50358643	-	IKZF1	chr7	50367353	-
5UTR-5UTR	ENST00000262646	ENST00000262646		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-5UTR	ENST00000262646	ENST00000531289		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-5UTR	ENST00000262646	ENST00000529579		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-intron	ENST00000262646	ENST00000530071		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-5UTR	ENST00000531289	ENST00000262646		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-5UTR	ENST00000531289	ENST00000531289		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-5UTR	ENST00000531289	ENST00000529579		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
5UTR-intron	ENST00000531289	ENST00000530071		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-5UTR	ENST00000529579	ENST00000262646		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-5UTR	ENST00000529579	ENST00000531289		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-5UTR	ENST00000529579	ENST00000529579		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-intron	ENST00000529579	ENST00000530071		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-5UTR	ENST00000530071	ENST00000262646		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-5UTR	ENST00000530071	ENST00000531289		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-5UTR	ENST00000530071	ENST00000529579		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-intron	ENST00000530071	ENST00000530071		ChiTaRS3.1			R68100	RAB2A	chr8	61429531	-	RAB2A	chr8	61429758	+
intron-intron	ENST00000355327	ENST00000355327		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000355327	ENST00000261862		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000355327	ENST00000357769		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000355327	ENST00000567838		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000261862	ENST00000355327		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000261862	ENST00000261862		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000261862	ENST00000357769		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000261862	ENST00000567838		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000357769	ENST00000355327		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000357769	ENST00000261862		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000357769	ENST00000357769		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000357769	ENST00000567838		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000567838	ENST00000355327		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000567838	ENST00000261862		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000567838	ENST00000357769		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000567838	ENST00000567838		ChiTaRS3.1			AW361930	THSD4	chr15	71587017	-	THSD4	chr15	71586685	+
intron-intron	ENST00000217074	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000217074	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000255136	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000255136	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000537323	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000537323	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000217073	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000217073	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000490798	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000490798	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000372824	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000372824	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000372819	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000372819	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000217075	ENST00000307301		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-intron	ENST00000217075	ENST00000352957		ChiTaRS3.1			BE179670	PABPC1L	chr20	43567081	+	MRPL39	chr21	26959956	+
intron-3CDS	ENST00000304992	ENST00000304992		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-3CDS	ENST00000304992	ENST00000572621		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-intron	ENST00000304992	ENST00000575116		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-3CDS	ENST00000572621	ENST00000304992		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-3CDS	ENST00000572621	ENST00000572621		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-intron	ENST00000572621	ENST00000575116		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-3CDS	ENST00000575116	ENST00000304992		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-3CDS	ENST00000575116	ENST00000572621		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
intron-intron	ENST00000575116	ENST00000575116		ChiTaRS3.1			BF773000	PRPF8	chr17	1564077	+	PRPF8	chr17	1563750	-
5CDS-3UTR	ENST00000370693	ENST00000370693		ChiTaRS3.1			BG391200	BAG2	chr6	57048919	-	BAG2	chr6	57048998	+
5CDS-3UTR	ENST00000370693	ENST00000545080		ChiTaRS3.1			BG391200	BAG2	chr6	57048919	-	BAG2	chr6	57048998	+
5CDS-3UTR	ENST00000545080	ENST00000370693		ChiTaRS3.1			BG391200	BAG2	chr6	57048919	-	BAG2	chr6	57048998	+
5CDS-3UTR	ENST00000545080	ENST00000545080		ChiTaRS3.1			BG391200	BAG2	chr6	57048919	-	BAG2	chr6	57048998	+
5CDS-intron	ENST00000347869	ENST00000470610		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
5CDS-intron	ENST00000347869	ENST00000389672		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
5CDS-intron	ENST00000347869	ENST00000542517		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
5CDS-intron	ENST00000347869	ENST00000514100		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
5CDS-intron	ENST00000347869	ENST00000502694		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
5CDS-intron	ENST00000347869	ENST00000442602		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000469838	ENST00000470610		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000469838	ENST00000389672		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000469838	ENST00000542517		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000469838	ENST00000514100		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000469838	ENST00000502694		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000469838	ENST00000442602		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000441812	ENST00000470610		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000441812	ENST00000389672		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000441812	ENST00000542517		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000441812	ENST00000514100		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000441812	ENST00000502694		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000441812	ENST00000442602		ChiTaRS3.1			AW858870	RBM5	chr3	50152936	+	EPHA6	chr3	97285141	+
intron-intron	ENST00000452313	ENST00000452313		ChiTaRS3.1			AW368280	NPIPB7	chr16	29001583	-	NPIPB7	chr16	28997986	+
intron-3CDS	ENST00000544095	ENST00000334049		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000544095	ENST00000535121		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000544095	ENST00000269162		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000544095	ENST00000423027		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-intron	ENST00000544095	ENST00000590972		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-5UTR	ENST00000544095	ENST00000602628		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000323825	ENST00000334049		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000323825	ENST00000535121		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000323825	ENST00000269162		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000323825	ENST00000423027		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-intron	ENST00000323825	ENST00000590972		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-5UTR	ENST00000323825	ENST00000602628		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000366899	ENST00000334049		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000366899	ENST00000535121		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000366899	ENST00000269162		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000366899	ENST00000423027		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-intron	ENST00000366899	ENST00000590972		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-5UTR	ENST00000366899	ENST00000602628		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000468085	ENST00000334049		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000468085	ENST00000535121		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000468085	ENST00000269162		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-3CDS	ENST00000468085	ENST00000423027		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-intron	ENST00000468085	ENST00000590972		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-5UTR	ENST00000468085	ENST00000602628		ChiTaRS3.1			DA291290	DUSP10	chr1	221906264	-	GNAL	chr18	11867165	+
intron-intron	ENST00000543760	ENST00000406775		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000543760	ENST00000342771		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000543760	ENST00000403018		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000543760	ENST00000489774		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000366672	ENST00000406775		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000366672	ENST00000342771		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000366672	ENST00000403018		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000366672	ENST00000489774		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000541865	ENST00000406775		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000541865	ENST00000342771		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000541865	ENST00000403018		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000541865	ENST00000489774		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000485438	ENST00000406775		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000485438	ENST00000342771		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000485438	ENST00000403018		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000485438	ENST00000489774		ChiTaRS3.1			AW015340	GALNT2	chr1	230301660	-	AUTS2	chr7	69723030	-
intron-intron	ENST00000374092	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000374092	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000374085	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000374085	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000498084	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000498084	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000397425	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000397425	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000540053	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000540053	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000541387	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000541387	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000306750	ENST00000283871		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-intron	ENST00000306750	ENST00000488183		ChiTaRS3.1			DW417230	NFS1	chr20	34276829	-	HGD	chr3	120389826	+
intron-5UTR	ENST00000512215	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000512215	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000512215	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000512215	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000394854	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000394854	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000394854	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000394854	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000323055	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000323055	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000323055	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000323055	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000394853	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000394853	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000394853	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000394853	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000507176	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000507176	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000507176	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000507176	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000523694	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000523694	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000523694	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000523694	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000510292	ENST00000429709		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000510292	ENST00000450518		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-5UTR	ENST00000510292	ENST00000392662		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000510292	ENST00000467615		ChiTaRS3.1			DA647290	PPP3CA	chr4	102249607	-	ACTL6A	chr3	179280714	+
intron-intron	ENST00000522212	ENST00000359282		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000603815		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000437231		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000447282		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000549863		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000359462		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000546463		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000552296		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000552819		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000455667		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000439930		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000548933		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000522212	ENST00000541275		ChiTaRS3.1			BE837740	TVP23C-CDRT4	chr17	15393064	+	PCBP2	chr12	53869500	+
intron-intron	ENST00000434271	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000434271	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000434271	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000434271	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000434271	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000434271	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000353047	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000353047	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000353047	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000353047	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000353047	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000353047	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000530640	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000530640	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000530640	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000530640	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000530640	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000530640	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000531089	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000531089	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000531089	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000531089	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000531089	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000531089	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000453527	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000453527	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000453527	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000453527	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000453527	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000453527	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000415599	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000415599	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000415599	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000415599	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000415599	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000415599	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000345125	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000345125	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000345125	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000345125	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000345125	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000345125	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000533455	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000533455	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000533455	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000533455	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000533455	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000533455	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000534510	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000534510	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000534510	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000534510	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000534510	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000534510	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000525076	ENST00000217246		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000525076	ENST00000310348		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000525076	ENST00000464883		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000525076	ENST00000402914		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000525076	ENST00000378058		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
intron-intron	ENST00000525076	ENST00000407045		ChiTaRS3.1			BE178430	CTSB	chr8	11700767	-	MACROD2	chr20	14133337	+
5CDS-intron	ENST00000323699	ENST00000367435		ChiTaRS3.1			AI167570	DEGS1	chr1	224380087	+	CDC73	chr1	193189506	+
5CDS-intron	ENST00000323699	ENST00000477868		ChiTaRS3.1			AI167570	DEGS1	chr1	224380087	+	CDC73	chr1	193189506	+
5CDS-intron	ENST00000391877	ENST00000367435		ChiTaRS3.1			AI167570	DEGS1	chr1	224380087	+	CDC73	chr1	193189506	+
5CDS-intron	ENST00000391877	ENST00000477868		ChiTaRS3.1			AI167570	DEGS1	chr1	224380087	+	CDC73	chr1	193189506	+
intron-intron	ENST00000465848	ENST00000367435		ChiTaRS3.1			AI167570	DEGS1	chr1	224380087	+	CDC73	chr1	193189506	+
intron-intron	ENST00000465848	ENST00000477868		ChiTaRS3.1			AI167570	DEGS1	chr1	224380087	+	CDC73	chr1	193189506	+
5CDS-intron	ENST00000343139	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-3UTR	ENST00000343139	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000343139	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-3UTR	ENST00000395363	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000395363	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-3UTR	ENST00000374949	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
5CDS-intron	ENST00000374949	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000457246	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000457246	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000453504	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000453504	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000442315	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442315	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000450960	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450960	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000466849	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000466849	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000456258	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000456258	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000450614	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000450614	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000441297	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000441297	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000463379	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000463379	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000420385	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000420385	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000383251	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000383251	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000548014	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548014	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000399678	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399678	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000399675	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000399675	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000451947	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000451947	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000443320	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000443320	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000416403	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000416403	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000442680	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000442680	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000498769	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000498769	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000550158	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000550158	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000548597	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000548597	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000418023	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000418023	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000552932	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000552932	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000547425	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000547425	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000395388		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000374982		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000383127		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000459705		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000434866		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000416883		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000481943		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000411505		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000414698		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000546379		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000493431		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000418111		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000383259		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000551750		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000461633		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000383258		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000442960		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000549531		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000482781		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000415767		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000411524		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000553193		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000444296	ENST00000498597		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-intron	ENST00000444296	ENST00000427753		ChiTaRS3.1			AF522250	HLA-DQA1	chr6	32609335	+	HLA-DRA	chr6	3757623	+
intron-3UTR	ENST00000399332	ENST00000291547		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-3UTR	ENST00000399332	ENST00000432907		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-intron	ENST00000399332	ENST00000607150		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-3UTR	ENST00000553700	ENST00000291547		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-3UTR	ENST00000553700	ENST00000432907		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-intron	ENST00000553700	ENST00000607150		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-3UTR	ENST00000556474	ENST00000291547		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-3UTR	ENST00000556474	ENST00000432907		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-intron	ENST00000556474	ENST00000607150		ChiTaRS3.1			BE084180	HECTD1	chr14	31604188	-	PKNOX1	chr21	44450293	+
intron-intron	ENST00000345985	ENST00000367545		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000345985	ENST00000367526		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000345985	ENST00000480333		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000381685	ENST00000367545		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000381685	ENST00000367526		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000381685	ENST00000480333		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000542668	ENST00000367545		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000542668	ENST00000367526		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000542668	ENST00000480333		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000538384	ENST00000367545		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000538384	ENST00000367526		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000538384	ENST00000480333		ChiTaRS3.1			BE969750	NOL10	chr2	10794919	+	UTRN	chr6	144773909	+
intron-intron	ENST00000396024	ENST00000474362		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000374721		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000489388		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000374726		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000429130		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000469949		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000460270		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000354759		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000489321		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000395895		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000374728		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000345491		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000333809		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000439705		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000337656		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000374734		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000479070		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000348787		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000361599		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000484283		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000395887		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000463314		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000342105		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000463960		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000487763		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000473940		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000488328		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000356917		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000488741		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000474931		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000468236		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000344351		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000396024	ENST00000490511		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000474362		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000374721		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000489388		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000374726		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000429130		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000469949		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000460270		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000354759		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000489321		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000395895		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000374728		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000345491		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000333809		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000439705		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000337656		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000374734		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000479070		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000348787		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000361599		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000484283		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000395887		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000463314		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000342105		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000463960		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000487763		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000473940		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000488328		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000356917		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000488741		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000474931		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000468236		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000344351		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000451270	ENST00000490511		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000474362		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000374721		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000489388		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000374726		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000429130		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000469949		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000460270		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000354759		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000489321		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000395895		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000374728		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000345491		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000333809		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000439705		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000337656		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000374734		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000479070		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000348787		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000361599		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000484283		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000395887		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000463314		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000342105		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000463960		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000487763		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000473940		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000488328		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000356917		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000488741		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000474931		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000468236		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000344351		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000332680	ENST00000490511		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000474362		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000374721		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000489388		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000374726		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000429130		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000469949		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000460270		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000354759		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000489321		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000395895		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000374728		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000345491		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000333809		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000439705		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000337656		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000374734		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000479070		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000348787		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000361599		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000484283		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000395887		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000463314		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000342105		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000463960		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000487763		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000473940		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000488328		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000356917		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000488741		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000474931		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000468236		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000344351		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000421017	ENST00000490511		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000474362		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000374721		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000489388		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000374726		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000429130		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000469949		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000460270		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000354759		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000489321		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000395895		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000374728		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000345491		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000333809		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000439705		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000337656		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000374734		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000479070		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000348787		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000361599		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000484283		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000395887		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000463314		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000342105		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000463960		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000487763		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000473940		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000488328		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000356917		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000488741		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000474931		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000468236		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000344351		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000557937	ENST00000490511		ChiTaRS3.1			CD367600	ANXA2	chr15	60643450	+	CREM	chr10	35416495	-
intron-intron	ENST00000394121	ENST00000394121		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000264637		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000584985		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000450525		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000394121	ENST00000546243		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000264637	ENST00000394121		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000264637		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000584985		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000450525		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000264637	ENST00000546243		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000584985	ENST00000394121		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000264637		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000584985		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000450525		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000584985	ENST00000546243		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-intron	ENST00000450525	ENST00000394121		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000264637		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000584985		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000450525		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-intron	ENST00000450525	ENST00000546243		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000546243	ENST00000394121		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000264637		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000584985		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000450525		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000546243	ENST00000546243		ChiTaRS3.1			BC006560	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-3UTR	ENST00000366691	ENST00000366691		ChiTaRS3.1			BU607370	RHOU	chr1	228879946	-	RHOU	chr1	228879974	+
3UTR-intron	ENST00000366691	ENST00000493528		ChiTaRS3.1			BU607370	RHOU	chr1	228879946	-	RHOU	chr1	228879974	+
intron-3UTR	ENST00000493528	ENST00000366691		ChiTaRS3.1			BU607370	RHOU	chr1	228879946	-	RHOU	chr1	228879974	+
intron-intron	ENST00000493528	ENST00000493528		ChiTaRS3.1			BU607370	RHOU	chr1	228879946	-	RHOU	chr1	228879974	+
intron-intron	ENST00000377093	ENST00000265678		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377093	ENST00000510118		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377093	ENST00000503859		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377093	ENST00000481261		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377093	ENST00000405189		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377093	ENST00000366863		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377093	ENST00000509742		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000265678		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000510118		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000503859		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000481261		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000405189		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000366863		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000263934	ENST00000509742		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000265678		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000510118		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000503859		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000481261		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000405189		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000366863		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377086	ENST00000509742		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000265678		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000510118		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000503859		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000481261		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000405189		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000366863		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377083	ENST00000509742		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000265678		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000510118		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000503859		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000481261		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000405189		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000366863		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000377081	ENST00000509742		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000265678		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000510118		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000503859		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000481261		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000405189		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000366863		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
intron-intron	ENST00000465635	ENST00000509742		ChiTaRS3.1			AA775960	KIF1B	chr1	10429061	+	RPS6KA2	chr6	167230340	-
3UTR-3UTR	ENST00000259371	ENST00000259371		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-3UTR	ENST00000259371	ENST00000408936		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-intron	ENST00000259371	ENST00000309989		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-intron	ENST00000259371	ENST00000487716		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-3UTR	ENST00000408936	ENST00000259371		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-3UTR	ENST00000408936	ENST00000408936		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-intron	ENST00000408936	ENST00000309989		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
3UTR-intron	ENST00000408936	ENST00000487716		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-3UTR	ENST00000309989	ENST00000259371		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-3UTR	ENST00000309989	ENST00000408936		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-intron	ENST00000309989	ENST00000309989		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-intron	ENST00000309989	ENST00000487716		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-3UTR	ENST00000487716	ENST00000259371		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-3UTR	ENST00000487716	ENST00000408936		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-intron	ENST00000487716	ENST00000309989		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-intron	ENST00000487716	ENST00000487716		ChiTaRS3.1			BM968130	DAB2IP	chr9	124547545	-	DAB2IP	chr9	124547469	+
intron-intron	ENST00000404479	ENST00000397887		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000404479	ENST00000330938		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000404479	ENST00000445724		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000404479	ENST00000397886		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000404479	ENST00000494690		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000318709	ENST00000397887		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000318709	ENST00000330938		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000318709	ENST00000445724		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000318709	ENST00000397886		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000318709	ENST00000494690		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000459629	ENST00000397887		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000459629	ENST00000330938		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000459629	ENST00000445724		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000459629	ENST00000397886		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000459629	ENST00000494690		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000409301	ENST00000397887		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000409301	ENST00000330938		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000409301	ENST00000445724		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000409301	ENST00000397886		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-intron	ENST00000409301	ENST00000494690		ChiTaRS3.1			BI022190	AVL9	chr7	32659860	-	PTTG1IP	chr21	46277000	-
intron-3CDS	ENST00000489520	ENST00000286574		ChiTaRS3.1			EF058195	RPSAP52	chr12	66345196	+	WIF1	chr12	65445253	-
Frame-shit	ENST00000307128	ENST00000307128		ChiTaRS3.1			BF825570	MYOZ2	chr4	120085546	+	MYOZ2	chr4	120107180	-
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BF355240	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000330062	ENST00000330062		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000330062	ENST00000539790		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000330062	ENST00000559482		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000330062	ENST00000540499		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000539790	ENST00000330062		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000539790	ENST00000539790		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000539790	ENST00000559482		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000539790	ENST00000540499		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000559482	ENST00000330062		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000559482	ENST00000539790		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000559482	ENST00000559482		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000559482	ENST00000540499		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000540499	ENST00000330062		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000540499	ENST00000539790		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000540499	ENST00000559482		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-intron	ENST00000540499	ENST00000540499		ChiTaRS3.1			AV658020	IDH2	chr15	90637602	-	IDH2	chr15	90639248	-
intron-3CDS	ENST00000369784	ENST00000355630		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000369784	ENST00000396617		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000369784	ENST00000402042		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000369784	ENST00000466278		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000369784	ENST00000407029		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000369784	ENST00000402630		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000487146	ENST00000355630		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000487146	ENST00000396617		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-3CDS	ENST00000487146	ENST00000402042		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000487146	ENST00000466278		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000487146	ENST00000407029		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000487146	ENST00000402630		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-3CDS	ENST00000602849	ENST00000355630		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-3CDS	ENST00000602849	ENST00000396617		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-3CDS	ENST00000602849	ENST00000402042		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-intron	ENST00000602849	ENST00000466278		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-intron	ENST00000602849	ENST00000407029		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
3UTR-intron	ENST00000602849	ENST00000402630		ChiTaRS3.1			AJ303090	RBM15	chr1	110884907	+	MKL1	chr22	40831559	-
intron-intron	ENST00000360416	ENST00000536122		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000268699		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000540721		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000536122		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000268699		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000540721		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000536122		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000268699		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000540721		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000536122		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000268699		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000540721		ChiTaRS3.1			BE153280	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-3CDS	ENST00000368124	ENST00000578681		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000368124	ENST00000583590		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000368124	ENST00000359353		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000368124	ENST00000389924		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000368124	ENST00000457800		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-intron	ENST00000368124	ENST00000582985		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
3UTR-3CDS	ENST00000368125	ENST00000578681		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
3UTR-3CDS	ENST00000368125	ENST00000583590		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
3UTR-3CDS	ENST00000368125	ENST00000359353		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
3UTR-3CDS	ENST00000368125	ENST00000389924		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
3UTR-3CDS	ENST00000368125	ENST00000457800		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
3UTR-intron	ENST00000368125	ENST00000582985		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000497636	ENST00000578681		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000497636	ENST00000583590		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000497636	ENST00000359353		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000497636	ENST00000389924		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-3CDS	ENST00000497636	ENST00000457800		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
intron-intron	ENST00000497636	ENST00000582985		ChiTaRS3.1			DB315810	CADM3	chr1	159172901	-	DDX42	chr17	61895212	-
5CDS-intron	ENST00000558401	ENST00000419152		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000532400		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000532741		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000317198		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000526838		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000442189		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000528610		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000423316		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000395119		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000529272		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000531621		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000524624		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000558401	ENST00000531770		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000419152		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000532400		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000532741		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000317198		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000526838		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000442189		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000528610		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000423316		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000395119		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000529272		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000531621		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000524624		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000559916	ENST00000531770		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000419152		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000532400		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000532741		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000317198		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000526838		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000442189		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000528610		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000423316		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000395119		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000529272		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000531621		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000524624		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
5CDS-intron	ENST00000544417	ENST00000531770		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000419152		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000532400		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000532741		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000317198		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000526838		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000442189		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000528610		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000423316		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000395119		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000529272		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000531621		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000524624		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-intron	ENST00000559220	ENST00000531770		ChiTaRS3.1			BC034020	B2M	chr15	45003812	+	EEF1D	chr8	144675116	-
intron-3CDS	ENST00000222374	ENST00000355624		ChiTaRS3.1			CB048460	CADM4	chr19	44126563	-	RAB11FIP2	chr10	119799656	+
intron-3CDS	ENST00000222374	ENST00000369199		ChiTaRS3.1			CB048460	CADM4	chr19	44126563	-	RAB11FIP2	chr10	119799656	+
intron-intron	ENST00000222374	ENST00000476207		ChiTaRS3.1			CB048460	CADM4	chr19	44126563	-	RAB11FIP2	chr10	119799656	+
intron-3CDS	ENST00000593506	ENST00000355624		ChiTaRS3.1			CB048460	CADM4	chr19	44126563	-	RAB11FIP2	chr10	119799656	+
intron-3CDS	ENST00000593506	ENST00000369199		ChiTaRS3.1			CB048460	CADM4	chr19	44126563	-	RAB11FIP2	chr10	119799656	+
intron-intron	ENST00000593506	ENST00000476207		ChiTaRS3.1			CB048460	CADM4	chr19	44126563	-	RAB11FIP2	chr10	119799656	+
intron-intron	ENST00000361204	ENST00000378460		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000361204	ENST00000530326		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000361204	ENST00000528071		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000361204	ENST00000528501		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000361204	ENST00000531016		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000361204	ENST00000532747		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000361204	ENST00000526870		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000378460		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000530326		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000528071		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000528501		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000531016		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000532747		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-intron	ENST00000491541	ENST00000526870		ChiTaRS3.1			BE147830	SREBF2	chr22	42235385	+	NUP160	chr11	47807681	+
intron-3UTR	ENST00000296503	ENST00000449606		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-3UTR	ENST00000296503	ENST00000563459		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-5UTR	ENST00000296503	ENST00000564987		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-intron	ENST00000296503	ENST00000564501		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-intron	ENST00000296503	ENST00000563232		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-3UTR	ENST00000438704	ENST00000449606		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-3UTR	ENST00000438704	ENST00000563459		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-5UTR	ENST00000438704	ENST00000564987		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-intron	ENST00000438704	ENST00000564501		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-intron	ENST00000438704	ENST00000563232		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-3UTR	ENST00000446922	ENST00000449606		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-3UTR	ENST00000446922	ENST00000563459		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-5UTR	ENST00000446922	ENST00000564987		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-intron	ENST00000446922	ENST00000564501		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
intron-intron	ENST00000446922	ENST00000563232		ChiTaRS3.1			AW605160	HMGB2	chr4	174253196	-	EARS2	chr16	23535431	+
5CDS-5UTR	ENST00000229329	ENST00000295897		ChiTaRS3.1			AF119840	CMAS	chr12	22215302	-	ALB	chr4	74270004	+
5CDS-5UTR	ENST00000229329	ENST00000415165		ChiTaRS3.1			AF119840	CMAS	chr12	22215302	-	ALB	chr4	74270004	+
5CDS-intron	ENST00000229329	ENST00000503124		ChiTaRS3.1			AF119840	CMAS	chr12	22215302	-	ALB	chr4	74270004	+
5CDS-intron	ENST00000229329	ENST00000509063		ChiTaRS3.1			AF119840	CMAS	chr12	22215302	-	ALB	chr4	74270004	+
5CDS-intron	ENST00000229329	ENST00000401494		ChiTaRS3.1			AF119840	CMAS	chr12	22215302	-	ALB	chr4	74270004	+
5CDS-intron	ENST00000229329	ENST00000505649		ChiTaRS3.1			AF119840	CMAS	chr12	22215302	-	ALB	chr4	74270004	+
intron-intron	ENST00000255409	ENST00000356462		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000400345		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000589054		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000256832		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000382850		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000256830		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000588516		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000456986		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000435432		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000357895		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000586263		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000456173		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000255409	ENST00000431212		ChiTaRS3.1			BQ181650	CHI3L1	chr1	203148220	+	NEDD4L	chr18	55798739	+
intron-intron	ENST00000262428	ENST00000515518		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000262428	ENST00000429839		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000262428	ENST00000455884		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000567278	ENST00000515518		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000567278	ENST00000429839		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000567278	ENST00000455884		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000564057	ENST00000515518		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000564057	ENST00000429839		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000564057	ENST00000455884		ChiTaRS3.1			BF750130	COTL1	chr16	84616629	+	TMEM232	chr5	110036335	-
intron-intron	ENST00000254260	ENST00000359314		ChiTaRS3.1			AA470830	RHPN2	chr19	33469801	+	CD2AP	chr6	47489474	-
intron-intron	ENST00000254260	ENST00000486693		ChiTaRS3.1			AA470830	RHPN2	chr19	33469801	+	CD2AP	chr6	47489474	-
intron-intron	ENST00000400226	ENST00000359314		ChiTaRS3.1			AA470830	RHPN2	chr19	33469801	+	CD2AP	chr6	47489474	-
intron-intron	ENST00000400226	ENST00000486693		ChiTaRS3.1			AA470830	RHPN2	chr19	33469801	+	CD2AP	chr6	47489474	-
intron-intron	ENST00000588683	ENST00000359314		ChiTaRS3.1			AA470830	RHPN2	chr19	33469801	+	CD2AP	chr6	47489474	-
intron-intron	ENST00000588683	ENST00000486693		ChiTaRS3.1			AA470830	RHPN2	chr19	33469801	+	CD2AP	chr6	47489474	-
intron-intron	ENST00000256339	ENST00000390548		ChiTaRS3.1			BG196290	UNC79	chr14	93814749	-	IGHG1	chr2	90379761	-
intron-intron	ENST00000555664	ENST00000390548		ChiTaRS3.1			BG196290	UNC79	chr14	93814749	-	IGHG1	chr2	90379761	-
intron-intron	ENST00000553484	ENST00000390548		ChiTaRS3.1			BG196290	UNC79	chr14	93814749	-	IGHG1	chr2	90379761	-
intron-intron	ENST00000393151	ENST00000390548		ChiTaRS3.1			BG196290	UNC79	chr14	93814749	-	IGHG1	chr2	90379761	-
intron-intron	ENST00000607016	ENST00000607016		ChiTaRS3.1			AW972150	NUDT3	chr6	34304844	-	NUDT3	chr6	34304762	+
intron-3UTR	ENST00000339554	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000339554	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371475	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371475	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371473	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371473	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000437259	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000437259	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000392812	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000392812	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000265663	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000265663	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371474	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371474	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371482	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371482	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371472	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371472	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000541195	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000541195	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000484316	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000484316	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371468	ENST00000331782		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000371468	ENST00000347004		ChiTaRS3.1			BE908930	NSMF	chr9	140342102	+	JAG2	chr14	105608886	-
intron-3UTR	ENST00000302475	ENST00000302475		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-5UTR	ENST00000302475	ENST00000514701		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000302475	ENST00000515367		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000302475	ENST00000408903		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-3UTR	ENST00000514701	ENST00000302475		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-5UTR	ENST00000514701	ENST00000514701		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000514701	ENST00000515367		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000514701	ENST00000408903		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-3UTR	ENST00000515367	ENST00000302475		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-5UTR	ENST00000515367	ENST00000514701		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000515367	ENST00000515367		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000515367	ENST00000408903		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-3UTR	ENST00000408903	ENST00000302475		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-5UTR	ENST00000408903	ENST00000514701		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000408903	ENST00000515367		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
intron-intron	ENST00000408903	ENST00000408903		ChiTaRS3.1			AA328920	MCC	chr5	112358322	+	MCC	chr5	112358279	-
Frame-shit	ENST00000445105	ENST00000361828		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000445105	ENST00000361510		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000445105	ENST00000361150		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000445105	ENST00000361715		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000445105	ENST00000361908		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000445105	ENST00000392438		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5CDS-intron	ENST00000445105	ENST00000487986		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000264730	ENST00000361828		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000264730	ENST00000361510		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000264730	ENST00000361150		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000264730	ENST00000361715		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000264730	ENST00000361908		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000264730	ENST00000392438		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5CDS-intron	ENST00000264730	ENST00000487986		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-3CDS	ENST00000454309	ENST00000361828		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-3CDS	ENST00000454309	ENST00000361510		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-3CDS	ENST00000454309	ENST00000361150		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-3CDS	ENST00000454309	ENST00000361715		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-3CDS	ENST00000454309	ENST00000361908		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-3CDS	ENST00000454309	ENST00000392438		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-intron	ENST00000454309	ENST00000487986		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
In-frame	ENST00000450716	ENST00000361828		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
In-frame	ENST00000450716	ENST00000361510		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
In-frame	ENST00000450716	ENST00000361150		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
In-frame	ENST00000450716	ENST00000361715		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
In-frame	ENST00000450716	ENST00000361908		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
In-frame	ENST00000450716	ENST00000392438		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5CDS-intron	ENST00000450716	ENST00000487986		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000430714	ENST00000361828		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000430714	ENST00000361510		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000430714	ENST00000361150		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000430714	ENST00000361715		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000430714	ENST00000361908		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
Frame-shit	ENST00000430714	ENST00000392438		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5CDS-intron	ENST00000430714	ENST00000487986		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-3CDS	ENST00000466144	ENST00000361828		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-3CDS	ENST00000466144	ENST00000361510		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-3CDS	ENST00000466144	ENST00000361150		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-3CDS	ENST00000466144	ENST00000361715		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-3CDS	ENST00000466144	ENST00000361908		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-3CDS	ENST00000466144	ENST00000392438		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
5UTR-intron	ENST00000466144	ENST00000487986		ChiTaRS3.1			DA123600	FGF12	chr3	192444970	-	OPA1	chr3	193409850	+
intron-intron	ENST00000433529	ENST00000347230		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000433529	ENST00000557306		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000433529	ENST00000555452		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000415783	ENST00000347230		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000415783	ENST00000557306		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000415783	ENST00000555452		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000282574	ENST00000347230		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000282574	ENST00000557306		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000282574	ENST00000555452		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000445587	ENST00000347230		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000445587	ENST00000557306		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000445587	ENST00000555452		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000482876	ENST00000347230		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000482876	ENST00000557306		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000482876	ENST00000555452		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000416149	ENST00000347230		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000416149	ENST00000557306		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
intron-intron	ENST00000416149	ENST00000555452		ChiTaRS3.1			BE172300	TIA1	chr2	70458852	-	ZFYVE26	chr14	68228868	-
3UTR-3CDS	ENST00000405315	ENST00000405315		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000405315	ENST00000407032		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000405315	ENST00000485798		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000405315	ENST00000263273		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000407032	ENST00000405315		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000407032	ENST00000407032		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000407032	ENST00000485798		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000407032	ENST00000263273		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3CDS	ENST00000485798	ENST00000405315		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3CDS	ENST00000485798	ENST00000407032		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000485798	ENST00000485798		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000485798	ENST00000263273		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000263273	ENST00000405315		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000263273	ENST00000407032		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000263273	ENST00000485798		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000263273	ENST00000263273		ChiTaRS3.1			BF309960	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000540693	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000540693	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000540693	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000540693	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000540693	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000540693	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000540693	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000337343	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000379274	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000261491	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000536612	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000498255	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000540693		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000337343		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000379274		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000261491		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000536612		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000498255		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000538674	ENST00000538674		ChiTaRS3.1			BF373800	DGKH	chr13	42742071	-	DGKH	chr13	42741978	+
intron-intron	ENST00000515037	ENST00000515037		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000515037	ENST00000358869		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000515037	ENST00000513966		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000358869	ENST00000515037		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000358869	ENST00000358869		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000358869	ENST00000513966		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000513966	ENST00000515037		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000513966	ENST00000358869		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000513966	ENST00000513966		ChiTaRS3.1			BE928450	FAM114A1	chr4	38916168	-	FAM114A1	chr4	38931746	+
intron-intron	ENST00000372572	ENST00000372572		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372572	ENST00000372573		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372572	ENST00000361346		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372572	ENST00000361776		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372572	ENST00000545068		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372572	ENST00000372571		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372573	ENST00000372572		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372573	ENST00000372573		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372573	ENST00000361346		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372573	ENST00000361776		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372573	ENST00000545068		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372573	ENST00000372571		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361346	ENST00000372572		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361346	ENST00000372573		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361346	ENST00000361346		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361346	ENST00000361776		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361346	ENST00000545068		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361346	ENST00000372571		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361776	ENST00000372572		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361776	ENST00000372573		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361776	ENST00000361346		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361776	ENST00000361776		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361776	ENST00000545068		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000361776	ENST00000372571		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000545068	ENST00000372572		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000545068	ENST00000372573		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000545068	ENST00000361346		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000545068	ENST00000361776		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000545068	ENST00000545068		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000545068	ENST00000372571		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372571	ENST00000372572		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372571	ENST00000372573		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372571	ENST00000361346		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372571	ENST00000361776		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372571	ENST00000545068		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000372571	ENST00000372571		ChiTaRS3.1			BF925020	FOXJ3	chr1	42652343	-	FOXJ3	chr1	42652305	+
intron-intron	ENST00000437099	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000437099	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000437099	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000437099	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000323816	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000323816	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000323816	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000323816	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000432992	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000432992	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000432992	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000432992	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000540214	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000540214	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000540214	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000540214	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000585266	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000585266	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000585266	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000585266	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000580865	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000580865	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000580865	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000580865	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000583882	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000583882	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000583882	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000583882	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000542249	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000542249	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000542249	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000542249	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000396115	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000396115	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000396115	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000396115	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000579158	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000579158	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000579158	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000579158	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000578655	ENST00000328194		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000578655	ENST00000530044		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000578655	ENST00000527700		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000578655	ENST00000526523		ChiTaRS3.1			BE502080	GAS7	chr17	9817600	+	DENND5A	chr11	9170033	+
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050788	KMT2A	chr11	118355307	+	AFF1	chr4	87976189	+
intron-intron	ENST00000370982	ENST00000475243		ChiTaRS3.1			BF349960	GNG12	chr1	68638529	-	VAPB	chr20	57004449	+
intron-intron	ENST00000370982	ENST00000395802		ChiTaRS3.1			BF349960	GNG12	chr1	68638529	-	VAPB	chr20	57004449	+
intron-intron	ENST00000370982	ENST00000265619		ChiTaRS3.1			BF349960	GNG12	chr1	68638529	-	VAPB	chr20	57004449	+
intron-intron	ENST00000494936	ENST00000475243		ChiTaRS3.1			BF349960	GNG12	chr1	68638529	-	VAPB	chr20	57004449	+
intron-intron	ENST00000494936	ENST00000395802		ChiTaRS3.1			BF349960	GNG12	chr1	68638529	-	VAPB	chr20	57004449	+
intron-intron	ENST00000494936	ENST00000265619		ChiTaRS3.1			BF349960	GNG12	chr1	68638529	-	VAPB	chr20	57004449	+
intron-3UTR	ENST00000287394	ENST00000287394		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000287394	ENST00000521903		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000287394	ENST00000534257		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-3UTR	ENST00000521903	ENST00000287394		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000521903	ENST00000521903		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000521903	ENST00000534257		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-3UTR	ENST00000534257	ENST00000287394		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000534257	ENST00000521903		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000534257	ENST00000534257		ChiTaRS3.1			BU679400	ATAD2	chr8	124332706	+	ATAD2	chr8	124332726	-
intron-intron	ENST00000263734	ENST00000409236		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000263734	ENST00000356421		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000263734	ENST00000317233		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000263734	ENST00000409579		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000263734	ENST00000483600		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000467888	ENST00000409236		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000467888	ENST00000356421		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000467888	ENST00000317233		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000467888	ENST00000409579		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000467888	ENST00000483600		ChiTaRS3.1			BI011520	EPAS1	chr2	46530359	+	AFF3	chr2	100573657	-
intron-intron	ENST00000392859	ENST00000507386		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
intron-intron	ENST00000392859	ENST00000265272		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
intron-intron	ENST00000392859	ENST00000333010		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000359415	ENST00000507386		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000359415	ENST00000265272		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000359415	ENST00000333010		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000534182	ENST00000507386		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000534182	ENST00000265272		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000534182	ENST00000333010		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000264028	ENST00000507386		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000264028	ENST00000265272		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
3UTR-intron	ENST00000264028	ENST00000333010		ChiTaRS3.1			AI990540	ARCN1	chr11	118473404	-	JAKMIP2	chr5	147091602	+
intron-5UTR	ENST00000447092	ENST00000447092		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000447092	ENST00000357750		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000447092	ENST00000395139		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000447092	ENST00000442581		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-5UTR	ENST00000357750	ENST00000447092		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000357750	ENST00000357750		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000357750	ENST00000395139		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000357750	ENST00000442581		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-5UTR	ENST00000395139	ENST00000447092		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000395139	ENST00000357750		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000395139	ENST00000395139		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000395139	ENST00000442581		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-5UTR	ENST00000442581	ENST00000447092		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000442581	ENST00000357750		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000442581	ENST00000395139		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-intron	ENST00000442581	ENST00000442581		ChiTaRS3.1			CF131370	HYAL2	chr3	50357153	-	HYAL2	chr3	50358599	-
intron-3CDS	ENST00000491671	ENST00000271640		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000491671	ENST00000368962		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000491671	ENST00000368969		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000491671	ENST00000368963		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000491671	ENST00000459773		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-3CDS	ENST00000216214	ENST00000271640		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000216214	ENST00000368962		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000216214	ENST00000368969		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000216214	ENST00000368963		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000216214	ENST00000459773		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-3CDS	ENST00000441876	ENST00000271640		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000441876	ENST00000368962		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000441876	ENST00000368969		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000441876	ENST00000368963		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000441876	ENST00000459773		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-3CDS	ENST00000405673	ENST00000271640		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405673	ENST00000368962		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405673	ENST00000368969		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405673	ENST00000368963		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405673	ENST00000459773		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-3CDS	ENST00000405548	ENST00000271640		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405548	ENST00000368962		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405548	ENST00000368969		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405548	ENST00000368963		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-intron	ENST00000405548	ENST00000459773		ChiTaRS3.1			BG953460	FAM118A	chr22	45712656	-	SETDB1	chr1	150936054	-
intron-3UTR	ENST00000375071	ENST00000299314		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-intron	ENST00000375071	ENST00000549940		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-intron	ENST00000375071	ENST00000392919		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-intron	ENST00000375071	ENST00000549165		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-3UTR	ENST00000461985	ENST00000299314		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-intron	ENST00000461985	ENST00000549940		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-intron	ENST00000461985	ENST00000392919		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-intron	ENST00000461985	ENST00000549165		ChiTaRS3.1			BU634160	CDA	chr1	20923871	-	GNPTAB	chr12	102140628	+
intron-3CDS	ENST00000475381	ENST00000475381		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000475381	ENST00000273512		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000475381	ENST00000538775		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000475381	ENST00000543711		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000273512	ENST00000475381		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000273512	ENST00000273512		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000273512	ENST00000538775		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000273512	ENST00000543711		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000538775	ENST00000475381		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000538775	ENST00000273512		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000538775	ENST00000538775		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000538775	ENST00000543711		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000543711	ENST00000475381		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000543711	ENST00000273512		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000543711	ENST00000538775		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3CDS	ENST00000543711	ENST00000543711		ChiTaRS3.1			BF803350	NCEH1	chr3	172351618	+	NCEH1	chr3	172351704	-
intron-3UTR	ENST00000523021	ENST00000288266		ChiTaRS3.1			BG776390	PDP1	chr8	94930528	+	APPL1	chr3	57306893	+
intron-3UTR	ENST00000297598	ENST00000288266		ChiTaRS3.1			BG776390	PDP1	chr8	94930528	+	APPL1	chr3	57306893	+
intron-3UTR	ENST00000520728	ENST00000288266		ChiTaRS3.1			BG776390	PDP1	chr8	94930528	+	APPL1	chr3	57306893	+
intron-3UTR	ENST00000396200	ENST00000288266		ChiTaRS3.1			BG776390	PDP1	chr8	94930528	+	APPL1	chr3	57306893	+
intron-3UTR	ENST00000517764	ENST00000288266		ChiTaRS3.1			BG776390	PDP1	chr8	94930528	+	APPL1	chr3	57306893	+
5CDS-intron	ENST00000246895	ENST00000468573		ChiTaRS3.1			BX487190	STATH	chr4	70866608	-	CHRM3	chr1	239615972	-
5CDS-intron	ENST00000246895	ENST00000255380		ChiTaRS3.1			BX487190	STATH	chr4	70866608	-	CHRM3	chr1	239615972	-
5CDS-intron	ENST00000381060	ENST00000468573		ChiTaRS3.1			BX487190	STATH	chr4	70866608	-	CHRM3	chr1	239615972	-
5CDS-intron	ENST00000381060	ENST00000255380		ChiTaRS3.1			BX487190	STATH	chr4	70866608	-	CHRM3	chr1	239615972	-
intron-intron	ENST00000309909	ENST00000309909		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000309909	ENST00000455858		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000309909	ENST00000551773		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000455858	ENST00000309909		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000455858	ENST00000455858		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000455858	ENST00000551773		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000551773	ENST00000309909		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000551773	ENST00000455858		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000551773	ENST00000551773		ChiTaRS3.1			AW891870	FBXW8	chr12	117429183	+	FBXW8	chr12	117429107	-
intron-intron	ENST00000366767	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366767	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366767	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366767	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366767	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366767	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366769	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366769	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366769	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366769	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366769	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366769	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366764	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366764	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366764	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366764	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366764	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366764	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000334218	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000334218	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000334218	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000334218	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000334218	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000334218	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366766	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366766	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366766	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366766	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366766	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366766	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000535525	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000535525	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000535525	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000535525	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000535525	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000535525	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366765	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366765	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366765	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366765	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366765	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000366765	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000488131	ENST00000528498		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000488131	ENST00000528900		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000488131	ENST00000405097		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000488131	ENST00000530301		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000488131	ENST00000343115		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000488131	ENST00000544551		ChiTaRS3.1			H96470	CDC42BPA	chr1	227411718	-	RDX	chr11	110159765	-
intron-intron	ENST00000443149	ENST00000515518		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000443149	ENST00000429839		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000443149	ENST00000455884		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000399933	ENST00000515518		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000399933	ENST00000429839		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000399933	ENST00000455884		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000381461	ENST00000515518		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000381461	ENST00000429839		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000381461	ENST00000455884		ChiTaRS3.1			BQ376550	KIAA2026	chr9	6007234	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000299601	ENST00000299601		ChiTaRS3.1			BU608550	LEO1	chr15	52249276	-	LEO1	chr15	52249968	-
intron-intron	ENST00000299601	ENST00000315141		ChiTaRS3.1			BU608550	LEO1	chr15	52249276	-	LEO1	chr15	52249968	-
intron-intron	ENST00000315141	ENST00000299601		ChiTaRS3.1			BU608550	LEO1	chr15	52249276	-	LEO1	chr15	52249968	-
intron-intron	ENST00000315141	ENST00000315141		ChiTaRS3.1			BU608550	LEO1	chr15	52249276	-	LEO1	chr15	52249968	-
intron-3CDS	ENST00000324366	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000324366	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000324366	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000324366	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000324366	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000324366	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000324366	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397441	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397441	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397441	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397441	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397441	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397441	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000397441	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397440	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397440	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397440	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397440	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397440	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000397440	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000397440	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000216350	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000216350	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000216350	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000216350	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000216350	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000216350	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000216350	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000538452	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000538452	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000538452	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000538452	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000538452	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000538452	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000538452	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553897	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553897	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553897	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553897	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553897	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553897	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000553897	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553641	ENST00000324366		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553641	ENST00000397441		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553641	ENST00000397440		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553641	ENST00000216350		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553641	ENST00000538452		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-3CDS	ENST00000553641	ENST00000553897		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
intron-intron	ENST00000553641	ENST00000553641		ChiTaRS3.1			BE063240	PRMT5	chr14	23395442	+	PRMT5	chr14	23391691	-
Frame-shit	ENST00000313077	ENST00000375217		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000313077	ENST00000375226		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000313077	ENST00000375267		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000313077	ENST00000375254		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000313077	ENST00000375225		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000313077	ENST00000429347		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000313077	ENST00000375224		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000313077	ENST00000543981		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-5UTR	ENST00000313077	ENST00000467272		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000313077	ENST00000375218		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000560848	ENST00000375217		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000560848	ENST00000375226		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000560848	ENST00000375267		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
Frame-shit	ENST00000560848	ENST00000375254		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000560848	ENST00000375225		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000560848	ENST00000429347		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000560848	ENST00000375224		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000560848	ENST00000543981		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-5UTR	ENST00000560848	ENST00000467272		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
5CDS-intron	ENST00000560848	ENST00000375218		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-3CDS	ENST00000435939	ENST00000375217		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-3CDS	ENST00000435939	ENST00000375226		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-3CDS	ENST00000435939	ENST00000375267		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-3CDS	ENST00000435939	ENST00000375254		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-intron	ENST00000435939	ENST00000375225		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-intron	ENST00000435939	ENST00000429347		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-intron	ENST00000435939	ENST00000375224		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-intron	ENST00000435939	ENST00000543981		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-5UTR	ENST00000435939	ENST00000467272		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-intron	ENST00000435939	ENST00000375218		ChiTaRS3.1			BF748810	CYFIP1	chr15	22929835	-	UBR4	chr1	19423732	+
intron-intron	ENST00000367355	ENST00000367355		ChiTaRS3.1			BE500990	LINC00862	chr1	200332270	+	LINC00862	chr1	200331533	+
intron-intron	ENST00000401084	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000401084	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264203	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375142	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000433834	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000264202	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000482808	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000360772		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000359169		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000360304		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000418370		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000578202		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000354792		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000346322		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000583087		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000475616		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
intron-intron	ENST00000375144	ENST00000510775		ChiTaRS3.1			BF358800	CAPZB	chr1	19796086	+	MYLK	chr3	123353449	+
5CDS-intron	ENST00000356239	ENST00000397338		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000356239	ENST00000282512		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000356239	ENST00000381937		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000356239	ENST00000511613		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000356239	ENST00000506945		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000356239	ENST00000514504		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000358100	ENST00000397338		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000358100	ENST00000282512		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000358100	ENST00000381937		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000358100	ENST00000511613		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000358100	ENST00000506945		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000358100	ENST00000514504		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000359028	ENST00000397338		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000359028	ENST00000282512		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000359028	ENST00000381937		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000359028	ENST00000511613		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000359028	ENST00000506945		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
5CDS-intron	ENST00000359028	ENST00000514504		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000394564	ENST00000397338		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000394564	ENST00000282512		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000394564	ENST00000381937		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000394564	ENST00000511613		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000394564	ENST00000506945		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000394564	ENST00000514504		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000491695	ENST00000397338		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000491695	ENST00000282512		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000491695	ENST00000381937		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000491695	ENST00000511613		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000491695	ENST00000506945		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-intron	ENST00000491695	ENST00000514504		ChiTaRS3.1			BE839380	AKAP9	chr7	91709221	+	NADK2	chr5	36223796	+
intron-3UTR	ENST00000262013	ENST00000262013		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000262013	ENST00000505279		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000262013	ENST00000357122		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000262013	ENST00000509724		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000262013	ENST00000510283		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-3UTR	ENST00000505279	ENST00000262013		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000505279	ENST00000505279		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000505279	ENST00000357122		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000505279	ENST00000509724		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000505279	ENST00000510283		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-3UTR	ENST00000357122	ENST00000262013		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000357122	ENST00000505279		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000357122	ENST00000357122		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000357122	ENST00000509724		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000357122	ENST00000510283		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-3UTR	ENST00000509724	ENST00000262013		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000509724	ENST00000505279		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000509724	ENST00000357122		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000509724	ENST00000509724		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000509724	ENST00000510283		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-3UTR	ENST00000510283	ENST00000262013		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000510283	ENST00000505279		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000510283	ENST00000357122		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000510283	ENST00000509724		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-intron	ENST00000510283	ENST00000510283		ChiTaRS3.1			AA746760	SPAG9	chr17	49039770	-	SPAG9	chr17	49039922	+
intron-3CDS	ENST00000301067	ENST00000301067		ChiTaRS3.1			BG002170	KMT2D	chr12	49426087	+	KMT2D	chr12	49425717	-
intron-intron	ENST00000301067	ENST00000549743		ChiTaRS3.1			BG002170	KMT2D	chr12	49426087	+	KMT2D	chr12	49425717	-
intron-3CDS	ENST00000549743	ENST00000301067		ChiTaRS3.1			BG002170	KMT2D	chr12	49426087	+	KMT2D	chr12	49425717	-
intron-intron	ENST00000549743	ENST00000549743		ChiTaRS3.1			BG002170	KMT2D	chr12	49426087	+	KMT2D	chr12	49425717	-
Frame-shit	ENST00000319006	ENST00000319006		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
Frame-shit	ENST00000319006	ENST00000528097		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
5CDS-intron	ENST00000319006	ENST00000532202		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
Frame-shit	ENST00000528097	ENST00000319006		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
Frame-shit	ENST00000528097	ENST00000528097		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
5CDS-intron	ENST00000528097	ENST00000532202		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-3CDS	ENST00000532202	ENST00000319006		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-3CDS	ENST00000532202	ENST00000528097		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-intron	ENST00000532202	ENST00000532202		ChiTaRS3.1			CV375270	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
3UTR-3UTR	ENST00000373253	ENST00000257290		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
3UTR-intron	ENST00000373253	ENST00000508170		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
3UTR-3UTR	ENST00000356090	ENST00000257290		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
3UTR-intron	ENST00000356090	ENST00000508170		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
3UTR-3UTR	ENST00000373243	ENST00000257290		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
3UTR-intron	ENST00000373243	ENST00000508170		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
intron-3UTR	ENST00000459931	ENST00000257290		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
intron-intron	ENST00000459931	ENST00000508170		ChiTaRS3.1			BU682470	NCDN	chr1	36032249	-	PDGFRA	chr4	55164280	+
intron-3CDS	ENST00000223293	ENST00000223293		ChiTaRS3.1			BE763960	GIMAP2	chr7	150387977	-	GIMAP2	chr7	150389865	-
intron-intron	ENST00000223293	ENST00000474605		ChiTaRS3.1			BE763960	GIMAP2	chr7	150387977	-	GIMAP2	chr7	150389865	-
intron-3CDS	ENST00000474605	ENST00000223293		ChiTaRS3.1			BE763960	GIMAP2	chr7	150387977	-	GIMAP2	chr7	150389865	-
intron-intron	ENST00000474605	ENST00000474605		ChiTaRS3.1			BE763960	GIMAP2	chr7	150387977	-	GIMAP2	chr7	150389865	-
3UTR-intron	ENST00000400337	ENST00000391918		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-5UTR	ENST00000400337	ENST00000291295		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-5UTR	ENST00000400337	ENST00000597743		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-3UTR	ENST00000400337	ENST00000477244		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000400337	ENST00000598871		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000400337	ENST00000594523		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000400337	ENST00000599839		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000400337	ENST00000596362		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000355480	ENST00000391918		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-5UTR	ENST00000355480	ENST00000291295		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-5UTR	ENST00000355480	ENST00000597743		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-3UTR	ENST00000355480	ENST00000477244		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000355480	ENST00000598871		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000355480	ENST00000594523		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000355480	ENST00000599839		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000355480	ENST00000596362		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000359759	ENST00000391918		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-5UTR	ENST00000359759	ENST00000291295		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-5UTR	ENST00000359759	ENST00000597743		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-3UTR	ENST00000359759	ENST00000477244		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000359759	ENST00000598871		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000359759	ENST00000594523		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000359759	ENST00000599839		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
3UTR-intron	ENST00000359759	ENST00000596362		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-intron	ENST00000459895	ENST00000391918		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-5UTR	ENST00000459895	ENST00000291295		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-5UTR	ENST00000459895	ENST00000597743		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-3UTR	ENST00000459895	ENST00000477244		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-intron	ENST00000459895	ENST00000598871		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-intron	ENST00000459895	ENST00000594523		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-intron	ENST00000459895	ENST00000599839		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
intron-intron	ENST00000459895	ENST00000596362		ChiTaRS3.1			BU931140	COL18A1	chr21	46933101	-	CALM3	chr19	47104576	+
Frame-shit	ENST00000261658	ENST00000261658		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000261658	ENST00000563971		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000261658	ENST00000426842		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
5CDS-intron	ENST00000261658	ENST00000563082		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000563971	ENST00000261658		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000563971	ENST00000563971		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000563971	ENST00000426842		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
5CDS-intron	ENST00000563971	ENST00000563082		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000426842	ENST00000261658		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000426842	ENST00000563971		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000426842	ENST00000426842		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
5CDS-intron	ENST00000426842	ENST00000563082		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000563082	ENST00000261658		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000563082	ENST00000563971		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000563082	ENST00000426842		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-intron	ENST00000563082	ENST00000563082		ChiTaRS3.1			CR746500	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
In-frame	ENST00000548411	ENST00000548411		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
In-frame	ENST00000548411	ENST00000281474		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
5CDS-intron	ENST00000548411	ENST00000551848		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
5CDS-intron	ENST00000548411	ENST00000550207		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
5CDS-intron	ENST00000548411	ENST00000551086		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
In-frame	ENST00000281474	ENST00000548411		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
In-frame	ENST00000281474	ENST00000281474		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
5CDS-intron	ENST00000281474	ENST00000551848		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
5CDS-intron	ENST00000281474	ENST00000550207		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
5CDS-intron	ENST00000281474	ENST00000551086		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-3CDS	ENST00000551848	ENST00000548411		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-3CDS	ENST00000551848	ENST00000281474		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000551848	ENST00000551848		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000551848	ENST00000550207		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000551848	ENST00000551086		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-3CDS	ENST00000550207	ENST00000548411		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-3CDS	ENST00000550207	ENST00000281474		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000550207	ENST00000551848		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000550207	ENST00000550207		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000550207	ENST00000551086		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-3CDS	ENST00000551086	ENST00000548411		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-3CDS	ENST00000551086	ENST00000281474		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000551086	ENST00000551848		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000551086	ENST00000550207		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
intron-intron	ENST00000551086	ENST00000551086		ChiTaRS3.1			BM722330	BICD1	chr12	32481198	-	BICD1	chr12	32481259	+
3UTR-3UTR	ENST00000258418	ENST00000258418		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000410084		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000409788		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000484398		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000410084	ENST00000258418		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000410084		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000409788		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000484398		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000409788	ENST00000258418		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000410084		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000409788		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000484398		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000484398	ENST00000258418		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000410084		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000409788		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000484398		ChiTaRS3.1			F00930	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
5CDS-5UTR	ENST00000287380	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-intron	ENST00000287380	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-5UTR	ENST00000309336	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-intron	ENST00000309336	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-5UTR	ENST00000327098	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-intron	ENST00000327098	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-5UTR	ENST00000522420	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-intron	ENST00000522420	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-5UTR	ENST00000521676	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-intron	ENST00000521676	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-5UTR	ENST00000378080	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
5CDS-intron	ENST00000378080	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
intron-5UTR	ENST00000518805	ENST00000327835		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
intron-intron	ENST00000518805	ENST00000520336		ChiTaRS3.1			XX000017	TBC1D31	chr8	124096582	+	ZNF704	chr8	81733852	-
intron-3CDS	ENST00000338134	ENST00000291041		ChiTaRS3.1			AI360240	KPTN	chr19	47978668	+	PSKH1	chr16	67943482	-
intron-intron	ENST00000338134	ENST00000575198		ChiTaRS3.1			AI360240	KPTN	chr19	47978668	+	PSKH1	chr16	67943482	-
intron-3CDS	ENST00000536339	ENST00000291041		ChiTaRS3.1			AI360240	KPTN	chr19	47978668	+	PSKH1	chr16	67943482	-
intron-intron	ENST00000536339	ENST00000575198		ChiTaRS3.1			AI360240	KPTN	chr19	47978668	+	PSKH1	chr16	67943482	-
intron-3CDS	ENST00000595484	ENST00000291041		ChiTaRS3.1			AI360240	KPTN	chr19	47978668	+	PSKH1	chr16	67943482	-
intron-intron	ENST00000595484	ENST00000575198		ChiTaRS3.1			AI360240	KPTN	chr19	47978668	+	PSKH1	chr16	67943482	-
3UTR-intron	ENST00000307296	ENST00000396432		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
3UTR-intron	ENST00000307296	ENST00000320481		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
3UTR-intron	ENST00000307296	ENST00000493154		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
3UTR-intron	ENST00000457054	ENST00000396432		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
3UTR-intron	ENST00000457054	ENST00000320481		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
3UTR-intron	ENST00000457054	ENST00000493154		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
intron-intron	ENST00000498147	ENST00000396432		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
intron-intron	ENST00000498147	ENST00000320481		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
intron-intron	ENST00000498147	ENST00000493154		ChiTaRS3.1			BF094120	PDCD6IP	chr3	33909393	-	ARHGAP21	chr10	24899836	+
intron-3UTR	ENST00000264235	ENST00000311028		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000264235	ENST00000395923		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000264235	ENST00000220931		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000521599		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000522951		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000519508		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000521371		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000316626	ENST00000311028		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000316626	ENST00000395923		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000316626	ENST00000220931		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000521599		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000522951		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000519508		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000521371		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000473886	ENST00000311028		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000473886	ENST00000395923		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000473886	ENST00000220931		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000521599		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000522951		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000519508		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000521371		ChiTaRS3.1			BG014470	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-5UTR	ENST00000257904	ENST00000307961		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000257904	ENST00000568588		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000257904	ENST00000564517		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-5UTR	ENST00000312990	ENST00000307961		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000312990	ENST00000568588		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000312990	ENST00000564517		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-5UTR	ENST00000549606	ENST00000307961		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000549606	ENST00000568588		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000549606	ENST00000564517		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-5UTR	ENST00000540325	ENST00000307961		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000540325	ENST00000568588		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000540325	ENST00000564517		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-5UTR	ENST00000551888	ENST00000307961		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000551888	ENST00000568588		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-intron	ENST00000551888	ENST00000564517		ChiTaRS3.1			BC001010	CDK4	chr12	58145120	+	RPL4	chr15	66797165	-
intron-3CDS	ENST00000339656	ENST00000437198		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000339656	ENST00000420015		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000339656	ENST00000341484		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000339656	ENST00000539279		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-intron	ENST00000339656	ENST00000566021		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000423137	ENST00000437198		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000423137	ENST00000420015		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000423137	ENST00000341484		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000423137	ENST00000539279		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-intron	ENST00000423137	ENST00000566021		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000419854	ENST00000437198		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000419854	ENST00000420015		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000419854	ENST00000341484		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000419854	ENST00000539279		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-intron	ENST00000419854	ENST00000566021		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000596433	ENST00000437198		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000596433	ENST00000420015		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000596433	ENST00000341484		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-3CDS	ENST00000596433	ENST00000539279		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-intron	ENST00000596433	ENST00000566021		ChiTaRS3.1			DA139780	ZNF587	chr19	58281246	+	PARN	chr16	14576686	-
intron-intron	ENST00000369252	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369252	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369252	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369252	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369252	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369252	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369252	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000533213	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000277895	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369266	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000392952	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000369253	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000254806		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000585462		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000591399		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000590221		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000344296		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000433525		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-intron	ENST00000477638	ENST00000590450		ChiTaRS3.1			BF923600	ABLIM1	chr10	116191197	-	WBP2	chr17	73849780	-
intron-3CDS	ENST00000497424	ENST00000497424		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3CDS	ENST00000497424	ENST00000316562		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3CDS	ENST00000497424	ENST00000610179		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3UTR	ENST00000497424	ENST00000464452		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
Frame-shit	ENST00000316562	ENST00000497424		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
Frame-shit	ENST00000316562	ENST00000316562		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
Frame-shit	ENST00000316562	ENST00000610179		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
5CDS-3UTR	ENST00000316562	ENST00000464452		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
Frame-shit	ENST00000610179	ENST00000497424		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
Frame-shit	ENST00000610179	ENST00000316562		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
Frame-shit	ENST00000610179	ENST00000610179		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
5CDS-3UTR	ENST00000610179	ENST00000464452		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3CDS	ENST00000464452	ENST00000497424		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3CDS	ENST00000464452	ENST00000316562		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3CDS	ENST00000464452	ENST00000610179		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-3UTR	ENST00000464452	ENST00000464452		ChiTaRS3.1			AI340170	PANK2	chr20	3870281	-	PANK2	chr20	3897611	-
intron-intron	ENST00000242317	ENST00000233146		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000242317	ENST00000543555		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000242317	ENST00000406134		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000242317	ENST00000461394		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000233146		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000543555		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000406134		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000461394		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000233146		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000543555		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000406134		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000461394		ChiTaRS3.1			BE143970	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000357637	ENST00000409068		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000357637	ENST00000409085		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000357637	ENST00000406297		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000357637	ENST00000470281		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000400334	ENST00000409068		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000400334	ENST00000409085		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000400334	ENST00000406297		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000400334	ENST00000470281		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000593225	ENST00000409068		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000593225	ENST00000409085		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000593225	ENST00000406297		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-intron	ENST00000593225	ENST00000470281		ChiTaRS3.1			AW862570	PIGN	chr18	59752061	+	AAK1	chr2	69724705	+
intron-3CDS	ENST00000260643	ENST00000260643		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000260643	ENST00000406567		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000260643	ENST00000416802		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000406567	ENST00000260643		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000406567	ENST00000406567		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000406567	ENST00000416802		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000416802	ENST00000260643		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000416802	ENST00000406567		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000416802	ENST00000416802		ChiTaRS3.1			AW968190	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-intron	ENST00000546111	ENST00000546111		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000546111	ENST00000535923		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000546111	ENST00000542912		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000546111	ENST00000440277		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000546111	ENST00000399433		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000546111	ENST00000544134		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000535923	ENST00000546111		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000535923	ENST00000535923		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000535923	ENST00000542912		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000535923	ENST00000440277		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000535923	ENST00000399433		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000535923	ENST00000544134		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000542912	ENST00000546111		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000542912	ENST00000535923		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000542912	ENST00000542912		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000542912	ENST00000440277		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000542912	ENST00000399433		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000542912	ENST00000544134		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000440277	ENST00000546111		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000440277	ENST00000535923		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000440277	ENST00000542912		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000440277	ENST00000440277		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000440277	ENST00000399433		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000440277	ENST00000544134		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000399433	ENST00000546111		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000399433	ENST00000535923		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000399433	ENST00000542912		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000399433	ENST00000440277		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000399433	ENST00000399433		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000399433	ENST00000544134		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000544134	ENST00000546111		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000544134	ENST00000535923		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000544134	ENST00000542912		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000544134	ENST00000440277		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000544134	ENST00000399433		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-intron	ENST00000544134	ENST00000544134		ChiTaRS3.1			AW265760	PHB2	chr12	7076931	+	PHB2	chr12	7076859	-
intron-5UTR	ENST00000342239	ENST00000367661		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000342239	ENST00000367662		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-intron	ENST00000342239	ENST00000486075		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000324109	ENST00000367661		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000324109	ENST00000367662		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-intron	ENST00000324109	ENST00000486075		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000543621	ENST00000367661		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000543621	ENST00000367662		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-intron	ENST00000543621	ENST00000486075		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000540316	ENST00000367661		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000540316	ENST00000367662		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-intron	ENST00000540316	ENST00000486075		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000472036	ENST00000367661		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-5UTR	ENST00000472036	ENST00000367662		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-intron	ENST00000472036	ENST00000486075		ChiTaRS3.1			BI048360	DNMBP	chr10	101680997	-	PAPPA2	chr1	176525010	+
intron-intron	ENST00000311191	ENST00000311191		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000311191	ENST00000389798		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000311191	ENST00000389797		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000389798	ENST00000311191		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000389798	ENST00000389798		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000389798	ENST00000389797		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000389797	ENST00000311191		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000389797	ENST00000389798		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
intron-intron	ENST00000389797	ENST00000389797		ChiTaRS3.1			BF827060	LRCH1	chr13	47155847	+	LRCH1	chr13	47155549	-
5CDS-3UTR	ENST00000360839	ENST00000503492		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000360839	ENST00000287008		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000360839	ENST00000394536		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000360839	ENST00000456271		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000360839	ENST00000511044		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000360839	ENST00000536585		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000297183	ENST00000503492		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000297183	ENST00000287008		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000297183	ENST00000394536		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000297183	ENST00000456271		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000297183	ENST00000511044		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000297183	ENST00000536585		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000394723	ENST00000503492		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000394723	ENST00000287008		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394723	ENST00000394536		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394723	ENST00000456271		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394723	ENST00000511044		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394723	ENST00000536585		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000394722	ENST00000503492		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-3UTR	ENST00000394722	ENST00000287008		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394722	ENST00000394536		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394722	ENST00000456271		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394722	ENST00000511044		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
5CDS-intron	ENST00000394722	ENST00000536585		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-3UTR	ENST00000462121	ENST00000503492		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-3UTR	ENST00000462121	ENST00000287008		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000462121	ENST00000394536		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000462121	ENST00000456271		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000462121	ENST00000511044		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000462121	ENST00000536585		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-3UTR	ENST00000544120	ENST00000503492		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-3UTR	ENST00000544120	ENST00000287008		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000544120	ENST00000394536		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000544120	ENST00000456271		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000544120	ENST00000511044		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000544120	ENST00000536585		ChiTaRS3.1			XX000011	ANKHD1	chr5	139825560	+	PCDH1	chr5	141234003	-
intron-intron	ENST00000330498	ENST00000330498		ChiTaRS3.1			T29710	SLC5A2	chr16	31501144	-	SLC5A2	chr16	31502114	-
intron-3UTR	ENST00000330498	ENST00000564197		ChiTaRS3.1			T29710	SLC5A2	chr16	31501144	-	SLC5A2	chr16	31502114	-
intron-intron	ENST00000564197	ENST00000330498		ChiTaRS3.1			T29710	SLC5A2	chr16	31501144	-	SLC5A2	chr16	31502114	-
intron-3UTR	ENST00000564197	ENST00000564197		ChiTaRS3.1			T29710	SLC5A2	chr16	31501144	-	SLC5A2	chr16	31502114	-
intron-intron	ENST00000402038	ENST00000375663		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000482996		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000444930		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000435657		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000487524		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000457796		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000469542		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000211402		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000462946		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000422694		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000491232		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000424974		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000425144		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000402038	ENST00000474299		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000375663		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000482996		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000444930		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000435657		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000487524		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000457796		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000469542		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000211402		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000462946		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000422694		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000491232		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000424974		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000425144		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
intron-intron	ENST00000492350	ENST00000474299		ChiTaRS3.1			R32780	PARG	chr10	51590028	-	VARS	chr6	3079091	+
3UTR-intron	ENST00000256495	ENST00000359660		ChiTaRS3.1			M78300	BHLHE40	chr3	5026573	-	FBXL17	chr5	107488453	-
3UTR-intron	ENST00000256495	ENST00000542267		ChiTaRS3.1			M78300	BHLHE40	chr3	5026573	-	FBXL17	chr5	107488453	-
3UTR-intron	ENST00000256495	ENST00000496714		ChiTaRS3.1			M78300	BHLHE40	chr3	5026573	-	FBXL17	chr5	107488453	-
intron-3UTR	ENST00000367268	ENST00000367240		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367268	ENST00000295706		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367268	ENST00000447715		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-intron	ENST00000367268	ENST00000414050		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367268	ENST00000272198		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-intron	ENST00000367268	ENST00000599966		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-intron	ENST00000367268	ENST00000594572		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367267	ENST00000367240		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367267	ENST00000295706		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367267	ENST00000447715		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-intron	ENST00000367267	ENST00000414050		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000367267	ENST00000272198		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-intron	ENST00000367267	ENST00000599966		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-intron	ENST00000367267	ENST00000594572		ChiTaRS3.1			AK094430	SYT2	chr1	202565206	-	PPFIA4	chr1	203047731	+
intron-3UTR	ENST00000257626	ENST00000257626		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000257626	ENST00000441833		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000257626	ENST00000440473		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000257626	ENST00000430584		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-3UTR	ENST00000441833	ENST00000257626		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000441833	ENST00000441833		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000441833	ENST00000440473		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000441833	ENST00000430584		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-3UTR	ENST00000440473	ENST00000257626		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000440473	ENST00000441833		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000440473	ENST00000440473		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000440473	ENST00000430584		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-3UTR	ENST00000430584	ENST00000257626		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000430584	ENST00000441833		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000430584	ENST00000440473		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000430584	ENST00000430584		ChiTaRS3.1			AA665030	GSAP	chr7	76940299	-	GSAP	chr7	76940177	+
intron-intron	ENST00000568104	ENST00000366523		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000568104	ENST00000366522		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000568104	ENST00000447569		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000568104	ENST00000487845		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000245157	ENST00000366523		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000245157	ENST00000366522		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000245157	ENST00000447569		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000245157	ENST00000487845		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000561951	ENST00000366523		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000561951	ENST00000366522		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000561951	ENST00000447569		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-intron	ENST00000561951	ENST00000487845		ChiTaRS3.1			BF999810	BBS2	chr16	56534284	+	EFCAB2	chr1	245141471	+
intron-3CDS	ENST00000311191	ENST00000521381		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-3CDS	ENST00000311191	ENST00000521657		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000311191	ENST00000517643		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000311191	ENST00000274335		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000311191	ENST00000396611		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000311191	ENST00000320694		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000311191	ENST00000336483		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000311191	ENST00000523872		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-3CDS	ENST00000389798	ENST00000521381		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-3CDS	ENST00000389798	ENST00000521657		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389798	ENST00000517643		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389798	ENST00000274335		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389798	ENST00000396611		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389798	ENST00000320694		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389798	ENST00000336483		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389798	ENST00000523872		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-3CDS	ENST00000389797	ENST00000521381		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-3CDS	ENST00000389797	ENST00000521657		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389797	ENST00000517643		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389797	ENST00000274335		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389797	ENST00000396611		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389797	ENST00000320694		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389797	ENST00000336483		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-intron	ENST00000389797	ENST00000523872		ChiTaRS3.1			BF849250	LRCH1	chr13	47155523	+	PIK3R1	chr5	67593268	+
intron-3UTR	ENST00000423230	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000423230	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000398656	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000534366	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000528919	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000326134	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000527071	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000355857		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000535617		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000535757		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000409094		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000311521		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000460901		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000542275		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-3UTR	ENST00000544576	ENST00000393103		ChiTaRS3.1			BF513350	MROH1	chr8	145236216	-	DBI	chr2	120129966	-
intron-intron	ENST00000257570	ENST00000330978		ChiTaRS3.1			BC064330	OASL	chr12	121476622	+	BOLA2	chr16	30194946	+
intron-intron	ENST00000339275	ENST00000330978		ChiTaRS3.1			BC064330	OASL	chr12	121476622	+	BOLA2	chr16	30194946	+
In-frame	ENST00000409039	ENST00000578681		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
In-frame	ENST00000409039	ENST00000583590		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
In-frame	ENST00000409039	ENST00000359353		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
In-frame	ENST00000409039	ENST00000389924		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
In-frame	ENST00000409039	ENST00000457800		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
5CDS-intron	ENST00000409039	ENST00000582985		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
intron-3CDS	ENST00000538983	ENST00000578681		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
intron-3CDS	ENST00000538983	ENST00000583590		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
intron-3CDS	ENST00000538983	ENST00000359353		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
intron-3CDS	ENST00000538983	ENST00000389924		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
intron-3CDS	ENST00000538983	ENST00000457800		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
intron-intron	ENST00000538983	ENST00000582985		ChiTaRS3.1			BQ330160	DNAH10	chr12	124416281	+	DDX42	chr17	61885198	+
In-frame	ENST00000374303	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-intron	ENST00000374303	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374303	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374303	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3CDS	ENST00000474295	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-intron	ENST00000474295	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000474295	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000474295	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3CDS	ENST00000469815	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-intron	ENST00000469815	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000469815	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000469815	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3CDS	ENST00000526894	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-intron	ENST00000526894	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000526894	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000526894	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
In-frame	ENST00000524618	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-intron	ENST00000524618	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000524618	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000524618	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
In-frame	ENST00000374307	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-intron	ENST00000374307	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374307	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374307	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
In-frame	ENST00000374301	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-intron	ENST00000374301	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374301	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374301	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
In-frame	ENST00000374300	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-intron	ENST00000374300	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374300	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
5CDS-3UTR	ENST00000374300	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3CDS	ENST00000466284	ENST00000340934		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-intron	ENST00000466284	ENST00000496267		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000466284	ENST00000537020		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
3UTR-3UTR	ENST00000466284	ENST00000539697		ChiTaRS3.1			BF089900	MTFR1L	chr1	26156304	-	BROX	chr1	222906016	-
intron-3CDS	ENST00000282470	ENST00000389757		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3CDS	ENST00000282470	ENST00000389759		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3UTR	ENST00000282470	ENST00000495123		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3CDS	ENST00000418378	ENST00000389757		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3CDS	ENST00000418378	ENST00000389759		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3UTR	ENST00000418378	ENST00000495123		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3CDS	ENST00000503414	ENST00000389757		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3CDS	ENST00000503414	ENST00000389759		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3UTR	ENST00000503414	ENST00000495123		ChiTaRS3.1			BF951590	SPARCL1	chr4	88416186	+	PKP4	chr2	159519580	-
intron-3CDS	ENST00000397063	ENST00000302418		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-intron	ENST00000397063	ENST00000493889		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-3CDS	ENST00000397062	ENST00000302418		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-intron	ENST00000397062	ENST00000493889		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-3CDS	ENST00000446151	ENST00000302418		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-intron	ENST00000446151	ENST00000493889		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-3CDS	ENST00000464747	ENST00000302418		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-intron	ENST00000464747	ENST00000493889		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-3CDS	ENST00000423513	ENST00000302418		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-intron	ENST00000423513	ENST00000493889		ChiTaRS3.1			AW379430	NFE2L2	chr2	178167146	+	KIF5B	chr10	32321675	+
intron-intron	ENST00000360839	ENST00000360839		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000360839	ENST00000297183		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000360839	ENST00000394723		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000360839	ENST00000394722		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000360839	ENST00000462121		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000360839	ENST00000544120		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000297183	ENST00000360839		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000297183	ENST00000297183		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000297183	ENST00000394723		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000297183	ENST00000394722		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000297183	ENST00000462121		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000297183	ENST00000544120		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394723	ENST00000360839		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394723	ENST00000297183		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394723	ENST00000394723		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394723	ENST00000394722		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394723	ENST00000462121		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394723	ENST00000544120		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394722	ENST00000360839		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394722	ENST00000297183		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394722	ENST00000394723		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394722	ENST00000394722		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394722	ENST00000462121		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000394722	ENST00000544120		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000462121	ENST00000360839		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000462121	ENST00000297183		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000462121	ENST00000394723		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000462121	ENST00000394722		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000462121	ENST00000462121		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000462121	ENST00000544120		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000544120	ENST00000360839		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000544120	ENST00000297183		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000544120	ENST00000394723		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000544120	ENST00000394722		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000544120	ENST00000462121		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000544120	ENST00000544120		ChiTaRS3.1			AI783650	ANKHD1	chr5	139915950	-	ANKHD1	chr5	139916333	-
intron-intron	ENST00000527986	ENST00000527986		ChiTaRS3.1			BE079470	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000527986	ENST00000528337		ChiTaRS3.1			BE079470	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000528337	ENST00000527986		ChiTaRS3.1			BE079470	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000528337	ENST00000528337		ChiTaRS3.1			BE079470	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
5CDS-intron	ENST00000580825	ENST00000329286		ChiTaRS3.1			BE082820	PPP1R1B	chr17	37790157	-	RAB12	chr18	8633367	+
5CDS-intron	ENST00000254079	ENST00000329286		ChiTaRS3.1			BE082820	PPP1R1B	chr17	37790157	-	RAB12	chr18	8633367	+
5CDS-intron	ENST00000579000	ENST00000329286		ChiTaRS3.1			BE082820	PPP1R1B	chr17	37790157	-	RAB12	chr18	8633367	+
5CDS-intron	ENST00000394265	ENST00000329286		ChiTaRS3.1			BE082820	PPP1R1B	chr17	37790157	-	RAB12	chr18	8633367	+
5CDS-intron	ENST00000394267	ENST00000329286		ChiTaRS3.1			BE082820	PPP1R1B	chr17	37790157	-	RAB12	chr18	8633367	+
3UTR-intron	ENST00000251595	ENST00000398571		ChiTaRS3.1			T53180	HBA2	chr16	223649	-	USP34	chr2	61498746	+
3UTR-intron	ENST00000251595	ENST00000472689		ChiTaRS3.1			T53180	HBA2	chr16	223649	-	USP34	chr2	61498746	+
3UTR-intron	ENST00000397806	ENST00000398571		ChiTaRS3.1			T53180	HBA2	chr16	223649	-	USP34	chr2	61498746	+
3UTR-intron	ENST00000397806	ENST00000472689		ChiTaRS3.1			T53180	HBA2	chr16	223649	-	USP34	chr2	61498746	+
In-frame	ENST00000302516	ENST00000302516		ChiTaRS3.1			BE774040	SF3B3	chr16	70602365	-	SF3B3	chr16	70602340	+
intron-3UTR	ENST00000393704	ENST00000393704		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000393704	ENST00000361618		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393704	ENST00000393702		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393704	ENST00000506110		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393704	ENST00000514683		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000361618	ENST00000393704		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000361618	ENST00000361618		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000361618	ENST00000393702		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000361618	ENST00000506110		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000361618	ENST00000514683		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000393702	ENST00000393704		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000393702	ENST00000361618		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393702	ENST00000393702		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393702	ENST00000506110		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393702	ENST00000514683		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000506110	ENST00000393704		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000506110	ENST00000361618		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000506110	ENST00000393702		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000506110	ENST00000506110		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000506110	ENST00000514683		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000514683	ENST00000393704		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000514683	ENST00000361618		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000514683	ENST00000393702		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000514683	ENST00000506110		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000514683	ENST00000514683		ChiTaRS3.1			BE073870	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000525967	ENST00000525967		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000525967	ENST00000525817		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000525967	ENST00000356091		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000525817	ENST00000525967		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000525817	ENST00000525817		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000525817	ENST00000356091		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000356091	ENST00000525967		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000356091	ENST00000525817		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
intron-intron	ENST00000356091	ENST00000356091		ChiTaRS3.1			BI044370	NPEPL1	chr20	57287703	+	NPEPL1	chr20	57287895	-
In-frame	ENST00000539068	ENST00000539068		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000539068	ENST00000536438		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000539068	ENST00000357266		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000539068	ENST00000540787		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
5CDS-intron	ENST00000539068	ENST00000542713		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000536438	ENST00000539068		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000536438	ENST00000536438		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000536438	ENST00000357266		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000536438	ENST00000540787		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
5CDS-intron	ENST00000536438	ENST00000542713		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000357266	ENST00000539068		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000357266	ENST00000536438		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000357266	ENST00000357266		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
In-frame	ENST00000357266	ENST00000540787		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
5CDS-intron	ENST00000357266	ENST00000542713		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
Frame-shit	ENST00000540787	ENST00000539068		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
Frame-shit	ENST00000540787	ENST00000536438		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
Frame-shit	ENST00000540787	ENST00000357266		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
Frame-shit	ENST00000540787	ENST00000540787		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
5CDS-intron	ENST00000540787	ENST00000542713		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
intron-3CDS	ENST00000542713	ENST00000539068		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
intron-3CDS	ENST00000542713	ENST00000536438		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
intron-3CDS	ENST00000542713	ENST00000357266		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
intron-3CDS	ENST00000542713	ENST00000540787		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
intron-intron	ENST00000542713	ENST00000542713		ChiTaRS3.1			BF818520	FKBP5	chr6	35547812	-	FKBP5	chr6	35544922	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF912030	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF912030	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF912030	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF912030	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3CDS	ENST00000574481	ENST00000574481		ChiTaRS3.1			BM919850	CTRL	chr16	67964696	+	CTRL	chr16	67964419	-
intron-intron	ENST00000574481	ENST00000576408		ChiTaRS3.1			BM919850	CTRL	chr16	67964696	+	CTRL	chr16	67964419	-
intron-3CDS	ENST00000576408	ENST00000574481		ChiTaRS3.1			BM919850	CTRL	chr16	67964696	+	CTRL	chr16	67964419	-
intron-intron	ENST00000576408	ENST00000576408		ChiTaRS3.1			BM919850	CTRL	chr16	67964696	+	CTRL	chr16	67964419	-
intron-3UTR	ENST00000409790	ENST00000203664		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-intron	ENST00000409790	ENST00000553723		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-3UTR	ENST00000409552	ENST00000203664		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-intron	ENST00000409552	ENST00000553723		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-3UTR	ENST00000465491	ENST00000203664		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-intron	ENST00000465491	ENST00000553723		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-3UTR	ENST00000381822	ENST00000203664		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-intron	ENST00000381822	ENST00000553723		ChiTaRS3.1			AW016280	CLEC16A	chr16	11250515	-	OTUB2	chr14	94512589	+
intron-3UTR	ENST00000469100	ENST00000375759		ChiTaRS3.1			AA171810	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000469100	ENST00000471538		ChiTaRS3.1			AA171810	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-3UTR	ENST00000373477	ENST00000375759		ChiTaRS3.1			AA171810	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000373477	ENST00000471538		ChiTaRS3.1			AA171810	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000370336	ENST00000355451		ChiTaRS3.1			BI029590	DDX43	chr6	74112602	-	NUDCD3	chr7	44466153	-
intron-intron	ENST00000370336	ENST00000460110		ChiTaRS3.1			BI029590	DDX43	chr6	74112602	-	NUDCD3	chr7	44466153	-
intron-intron	ENST00000539829	ENST00000355451		ChiTaRS3.1			BI029590	DDX43	chr6	74112602	-	NUDCD3	chr7	44466153	-
intron-intron	ENST00000539829	ENST00000460110		ChiTaRS3.1			BI029590	DDX43	chr6	74112602	-	NUDCD3	chr7	44466153	-
intron-intron	ENST00000479773	ENST00000355451		ChiTaRS3.1			BI029590	DDX43	chr6	74112602	-	NUDCD3	chr7	44466153	-
intron-intron	ENST00000479773	ENST00000460110		ChiTaRS3.1			BI029590	DDX43	chr6	74112602	-	NUDCD3	chr7	44466153	-
3UTR-intron	ENST00000327367	ENST00000253861		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
3UTR-intron	ENST00000327367	ENST00000539845		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
3UTR-intron	ENST00000327367	ENST00000393161		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
3UTR-intron	ENST00000327367	ENST00000545148		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
3UTR-intron	ENST00000327367	ENST00000460346		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
3UTR-intron	ENST00000327367	ENST00000541309		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000559092	ENST00000253861		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000559092	ENST00000539845		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000559092	ENST00000393161		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000559092	ENST00000545148		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000559092	ENST00000460346		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000559092	ENST00000541309		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000540846	ENST00000253861		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000540846	ENST00000539845		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000540846	ENST00000393161		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000540846	ENST00000545148		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000540846	ENST00000460346		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000540846	ENST00000541309		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000439724	ENST00000253861		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000439724	ENST00000539845		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000439724	ENST00000393161		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000439724	ENST00000545148		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000439724	ENST00000460346		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000439724	ENST00000541309		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000537194	ENST00000253861		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000537194	ENST00000539845		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000537194	ENST00000393161		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000537194	ENST00000545148		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000537194	ENST00000460346		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-intron	ENST00000537194	ENST00000541309		ChiTaRS3.1			BG977350	SMAD3	chr15	67483523	-	EXOC4	chr7	133724335	+
intron-3CDS	ENST00000427245	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000427245	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000427245	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000427245	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000427245	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000427245	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000525682	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000525682	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000525682	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000525682	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000525682	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000525682	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000236342	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000236342	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000236342	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000236342	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000236342	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000236342	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000526219	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000526219	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000526219	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000526219	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000526219	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000526219	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000374185	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000374185	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000374185	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000374185	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000374185	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000374185	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000360009	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000360009	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000360009	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000360009	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000360009	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000360009	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000531955	ENST00000358136		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000531955	ENST00000356315		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000531955	ENST00000496628		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000531955	ENST00000543766		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000531955	ENST00000471923		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-intron	ENST00000531955	ENST00000543710		ChiTaRS3.1			AW837680	DHDDS	chr1	26761375	-	VPS13D	chr1	12316388	+
intron-3CDS	ENST00000261254	ENST00000304613		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-3CDS	ENST00000261254	ENST00000368572		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-3CDS	ENST00000261254	ENST00000368571		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-intron	ENST00000261254	ENST00000530127		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-3CDS	ENST00000541542	ENST00000304613		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-3CDS	ENST00000541542	ENST00000368572		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-3CDS	ENST00000541542	ENST00000368571		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
intron-intron	ENST00000541542	ENST00000530127		ChiTaRS3.1			BQ338280	CCND2	chr12	4403141	-	KNDC1	chr10	134999935	+
5CDS-3UTR	ENST00000506491	ENST00000221214		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000506491	ENST00000457542		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000506491	ENST00000260357		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000506491	ENST00000456763		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000506491	ENST00000514566		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000506491	ENST00000507762		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000508657	ENST00000221214		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000508657	ENST00000457542		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000508657	ENST00000260357		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000508657	ENST00000456763		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000508657	ENST00000514566		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000508657	ENST00000507762		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000309755	ENST00000221214		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000309755	ENST00000457542		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000309755	ENST00000260357		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-3UTR	ENST00000309755	ENST00000456763		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000309755	ENST00000514566		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
5CDS-intron	ENST00000309755	ENST00000507762		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000506873	ENST00000221214		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000506873	ENST00000457542		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000506873	ENST00000260357		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000506873	ENST00000456763		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000506873	ENST00000514566		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000506873	ENST00000507762		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000541417	ENST00000221214		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000541417	ENST00000457542		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000541417	ENST00000260357		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000541417	ENST00000456763		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000541417	ENST00000514566		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000541417	ENST00000507762		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000394937	ENST00000221214		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000394937	ENST00000457542		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000394937	ENST00000260357		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3UTR	ENST00000394937	ENST00000456763		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000394937	ENST00000514566		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-intron	ENST00000394937	ENST00000507762		ChiTaRS3.1			AK098190	KLHL3	chr5	136972983	-	MAPKBP1	chr15	42119417	+
intron-3CDS	ENST00000273077	ENST00000265174		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-intron	ENST00000273077	ENST00000511304		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-3CDS	ENST00000472650	ENST00000265174		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-intron	ENST00000472650	ENST00000511304		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-3CDS	ENST00000248451	ENST00000265174		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-intron	ENST00000248451	ENST00000511304		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-3CDS	ENST00000258362	ENST00000265174		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-intron	ENST00000258362	ENST00000511304		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-3CDS	ENST00000436005	ENST00000265174		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
intron-intron	ENST00000436005	ENST00000511304		ChiTaRS3.1			CB216910	PNKD	chr2	219195765	+	PAPSS1	chr4	108552874	-
In-frame	ENST00000323848	ENST00000323848		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000323848	ENST00000447431		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-intron	ENST00000323848	ENST00000374389		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000323848	ENST00000479034		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000323848	ENST00000537199		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000447431	ENST00000323848		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000447431	ENST00000447431		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-intron	ENST00000447431	ENST00000374389		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000447431	ENST00000479034		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000447431	ENST00000537199		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000374389	ENST00000323848		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000374389	ENST00000447431		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-intron	ENST00000374389	ENST00000374389		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000374389	ENST00000479034		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000374389	ENST00000537199		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
3UTR-3CDS	ENST00000479034	ENST00000323848		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
3UTR-3CDS	ENST00000479034	ENST00000447431		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
3UTR-intron	ENST00000479034	ENST00000374389		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
3UTR-3UTR	ENST00000479034	ENST00000479034		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
3UTR-3UTR	ENST00000479034	ENST00000537199		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000537199	ENST00000323848		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
In-frame	ENST00000537199	ENST00000447431		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-intron	ENST00000537199	ENST00000374389		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000537199	ENST00000479034		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
5CDS-3UTR	ENST00000537199	ENST00000537199		ChiTaRS3.1			BF946590	SRRM1	chr1	24979027	-	SRRM1	chr1	24979402	+
intron-3CDS	ENST00000317361	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000317361	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-3CDS	ENST00000399767	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000399767	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-3CDS	ENST00000399774	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000399774	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-3CDS	ENST00000399765	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000399765	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-3CDS	ENST00000342111	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000342111	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-3CDS	ENST00000551952	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000551952	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-3CDS	ENST00000473439	ENST00000264279		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000473439	ENST00000467734		ChiTaRS3.1			BU678510	BID	chr22	18246572	+	NOP58	chr2	203167681	+
intron-intron	ENST00000361205	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000361205	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000399848	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000359446	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000587757	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000585931	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000586765	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000590308	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000546474		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000327359		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000440513		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000392557		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000379937		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000547530		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000446501		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000379932		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000551787		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000549044		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-intron	ENST00000592991	ENST00000548421		ChiTaRS3.1			BE830540	LDLRAD4	chr18	13526320	+	BRF1	chr14	105717121	-
intron-3UTR	ENST00000305366	ENST00000305366		ChiTaRS3.1			AW131300	TM4SF1	chr3	149087086	+	TM4SF1	chr3	149087133	-
intron-3UTR	ENST00000305366	ENST00000472441		ChiTaRS3.1			AW131300	TM4SF1	chr3	149087086	+	TM4SF1	chr3	149087133	-
intron-3UTR	ENST00000472441	ENST00000305366		ChiTaRS3.1			AW131300	TM4SF1	chr3	149087086	+	TM4SF1	chr3	149087133	-
intron-3UTR	ENST00000472441	ENST00000472441		ChiTaRS3.1			AW131300	TM4SF1	chr3	149087086	+	TM4SF1	chr3	149087133	-
intron-intron	ENST00000265113	ENST00000216085		ChiTaRS3.1			BI036360	SLC1A3	chr5	36633874	+	RHBDD3	chr22	29660262	-
intron-intron	ENST00000506725	ENST00000216085		ChiTaRS3.1			BI036360	SLC1A3	chr5	36633874	+	RHBDD3	chr22	29660262	-
intron-intron	ENST00000381918	ENST00000216085		ChiTaRS3.1			BI036360	SLC1A3	chr5	36633874	+	RHBDD3	chr22	29660262	-
intron-3CDS	ENST00000367689	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367689	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000357444	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000357444	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000251507	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000251507	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000325589	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000325589	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367686	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367686	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367687	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367687	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000347255	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000347255	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000489615	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000489615	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000478442	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000478442	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000486220	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000486220	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000392064	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000392064	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367688	ENST00000250092		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-3CDS	ENST00000367688	ENST00000380498		ChiTaRS3.1			AW015760	RABGAP1L	chr1	174887653	+	CD68	chr17	7483379	-
intron-intron	ENST00000506455	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000506455	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000506455	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000506455	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000506455	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511108	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000511108	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511108	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511108	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511108	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511507	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000511507	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511507	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511507	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000511507	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000515602	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000515602	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000515602	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000515602	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000515602	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000455639	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000455639	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000455639	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000455639	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000455639	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000393832	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000393832	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000393832	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000393832	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000393832	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000296518	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000296518	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000296518	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000296518	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000296518	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000513574	ENST00000280187		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-5UTR	ENST00000513574	ENST00000393658		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000513574	ENST00000506894		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000513574	ENST00000515090		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
intron-intron	ENST00000513574	ENST00000506219		ChiTaRS3.1			DA290840	GUCY1A3	chr4	156654653	+	GPM6A	chr4	176733417	-
5CDS-5UTR	ENST00000263056	ENST00000263056		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000263056	ENST00000542547		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000263056	ENST00000375322		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000263056	ENST00000375321		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000542547	ENST00000263056		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000542547	ENST00000542547		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000542547	ENST00000375322		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000542547	ENST00000375321		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000375322	ENST00000263056		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000375322	ENST00000542547		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000375322	ENST00000375322		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000375322	ENST00000375321		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000375321	ENST00000263056		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000375321	ENST00000542547		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-5UTR	ENST00000375321	ENST00000375322		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
5CDS-intron	ENST00000375321	ENST00000375321		ChiTaRS3.1			CB240670	MAP3K8	chr10	30727903	-	MAP3K8	chr10	30726306	+
intron-intron	ENST00000261427	ENST00000261427		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000261427	ENST00000295963		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000261427	ENST00000438068		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000261427	ENST00000503368		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000261427	ENST00000445950		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000295963	ENST00000261427		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000295963	ENST00000295963		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000295963	ENST00000438068		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000295963	ENST00000503368		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000295963	ENST00000445950		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000438068	ENST00000261427		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000438068	ENST00000295963		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000438068	ENST00000438068		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000438068	ENST00000503368		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000438068	ENST00000445950		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000503368	ENST00000261427		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000503368	ENST00000295963		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000503368	ENST00000438068		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000503368	ENST00000503368		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000503368	ENST00000445950		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000445950	ENST00000261427		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000445950	ENST00000295963		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000445950	ENST00000438068		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000445950	ENST00000503368		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-intron	ENST00000445950	ENST00000445950		ChiTaRS3.1			BF667380	UBE2K	chr4	39747346	+	UBE2K	chr4	39739134	+
intron-3UTR	ENST00000303052	ENST00000453386		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000303052	ENST00000382191		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000303052	ENST00000471134		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000303052	ENST00000342294		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-3UTR	ENST00000607537	ENST00000453386		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000607537	ENST00000382191		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000607537	ENST00000471134		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000607537	ENST00000342294		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-3UTR	ENST00000303032	ENST00000453386		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000303032	ENST00000382191		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000303032	ENST00000471134		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000303032	ENST00000342294		ChiTaRS3.1			BF812640	CSNK1G1	chr15	64496765	-	TRA2B	chr3	185635171	+
intron-intron	ENST00000255674	ENST00000340811		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000255674	ENST00000070846		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000255674	ENST00000546741		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000454359	ENST00000340811		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000454359	ENST00000070846		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000454359	ENST00000546741		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000437017	ENST00000340811		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000437017	ENST00000070846		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000437017	ENST00000546741		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000579986	ENST00000340811		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000579986	ENST00000070846		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-intron	ENST00000579986	ENST00000546741		ChiTaRS3.1			C04990	RTTN	chr18	67731326	+	PKP2	chr12	32948608	+
intron-3CDS	ENST00000316149	ENST00000316149		ChiTaRS3.1			BU680050	NDUFAF4	chr6	97338941	+	NDUFAF4	chr6	97344707	-
intron-5UTR	ENST00000316149	ENST00000489477		ChiTaRS3.1			BU680050	NDUFAF4	chr6	97338941	+	NDUFAF4	chr6	97344707	-
intron-3CDS	ENST00000489477	ENST00000316149		ChiTaRS3.1			BU680050	NDUFAF4	chr6	97338941	+	NDUFAF4	chr6	97344707	-
intron-5UTR	ENST00000489477	ENST00000489477		ChiTaRS3.1			BU680050	NDUFAF4	chr6	97338941	+	NDUFAF4	chr6	97344707	-
intron-intron	ENST00000369825	ENST00000369825		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000369811		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000369815		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000337003		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000309579		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369825		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369811		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369815		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000337003		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000309579		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369825		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369811		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369815		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000337003		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000309579		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369825		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369811		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369815		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000337003		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000309579		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369825		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369811		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369815		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000337003		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000309579		ChiTaRS3.1			AW862550	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-3CDS	ENST00000341084	ENST00000341084		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-3CDS	ENST00000341084	ENST00000519449		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-5UTR	ENST00000341084	ENST00000523255		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-3CDS	ENST00000519449	ENST00000341084		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-3CDS	ENST00000519449	ENST00000519449		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-5UTR	ENST00000519449	ENST00000523255		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-3CDS	ENST00000523255	ENST00000341084		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-3CDS	ENST00000523255	ENST00000519449		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-5UTR	ENST00000523255	ENST00000523255		ChiTaRS3.1			AU154830	RNF19A	chr8	101322171	+	RNF19A	chr8	101272196	+
intron-intron	ENST00000512055	ENST00000400301		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512055	ENST00000308271		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512055	ENST00000374732		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512055	ENST00000529637		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512055	ENST00000479177		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-3UTR	ENST00000512055	ENST00000421625		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000429747	ENST00000400301		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000429747	ENST00000308271		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000429747	ENST00000374732		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000429747	ENST00000529637		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000429747	ENST00000479177		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-3UTR	ENST00000429747	ENST00000421625		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512332	ENST00000400301		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512332	ENST00000308271		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512332	ENST00000374732		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512332	ENST00000529637		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000512332	ENST00000479177		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-3UTR	ENST00000512332	ENST00000421625		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000511604	ENST00000400301		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000511604	ENST00000308271		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000511604	ENST00000374732		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000511604	ENST00000529637		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000511604	ENST00000479177		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-3UTR	ENST00000511604	ENST00000421625		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000502818	ENST00000400301		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000502818	ENST00000308271		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000502818	ENST00000374732		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000502818	ENST00000529637		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000502818	ENST00000479177		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-3UTR	ENST00000502818	ENST00000421625		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000503204	ENST00000400301		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000503204	ENST00000308271		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000503204	ENST00000374732		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000503204	ENST00000529637		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000503204	ENST00000479177		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-3UTR	ENST00000503204	ENST00000421625		ChiTaRS3.1			BP396500	CPNE4	chr3	131566155	-	USP48	chr1	22054394	-
intron-intron	ENST00000313174	ENST00000452201		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000313174	ENST00000398417		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000313174	ENST00000342988		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000313174	ENST00000588745		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000313174	ENST00000586253		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000305425	ENST00000452201		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000305425	ENST00000398417		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000305425	ENST00000342988		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000305425	ENST00000588745		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000305425	ENST00000586253		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000354591	ENST00000452201		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000354591	ENST00000398417		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000354591	ENST00000342988		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000354591	ENST00000588745		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000354591	ENST00000586253		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000359684	ENST00000452201		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000359684	ENST00000398417		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000359684	ENST00000342988		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000359684	ENST00000588745		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
intron-intron	ENST00000359684	ENST00000586253		ChiTaRS3.1			BE839020	DACH1	chr13	72166537	+	SMAD4	chr18	48591912	+
3UTR-intron	ENST00000361138	ENST00000418404		ChiTaRS3.1			AA404360	SMC5	chr9	72969399	-	MYH13	chr17	10217810	-
3UTR-intron	ENST00000361138	ENST00000252172		ChiTaRS3.1			AA404360	SMC5	chr9	72969399	-	MYH13	chr17	10217810	-
intron-intron	ENST00000471372	ENST00000418404		ChiTaRS3.1			AA404360	SMC5	chr9	72969399	-	MYH13	chr17	10217810	-
intron-intron	ENST00000471372	ENST00000252172		ChiTaRS3.1			AA404360	SMC5	chr9	72969399	-	MYH13	chr17	10217810	-
intron-3CDS	ENST00000355537	ENST00000295897		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000355537	ENST00000415165		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000355537	ENST00000503124		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000355537	ENST00000509063		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000355537	ENST00000401494		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3UTR	ENST00000355537	ENST00000505649		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000590564	ENST00000295897		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000590564	ENST00000415165		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000590564	ENST00000503124		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000590564	ENST00000509063		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3CDS	ENST00000590564	ENST00000401494		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-3UTR	ENST00000590564	ENST00000505649		ChiTaRS3.1			AF118090	ZNF536	chr19	30863628	-	ALB	chr4	74279313	+
intron-intron	ENST00000301785	ENST00000360284		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000545748		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000550082		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000547206		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000243050		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000394825		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000394824		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-intron	ENST00000301785	ENST00000548232		ChiTaRS3.1			BI909860	HNRNPUL2	chr11	62487565	-	NR4A1	chr12	52444388	+
intron-3UTR	ENST00000375078	ENST00000375078		ChiTaRS3.1			BI913410	CAMK2N1	chr1	20809597	-	CAMK2N1	chr1	20809625	+
intron-intron	ENST00000375078	ENST00000489020		ChiTaRS3.1			BI913410	CAMK2N1	chr1	20809597	-	CAMK2N1	chr1	20809625	+
intron-3UTR	ENST00000489020	ENST00000375078		ChiTaRS3.1			BI913410	CAMK2N1	chr1	20809597	-	CAMK2N1	chr1	20809625	+
intron-intron	ENST00000489020	ENST00000489020		ChiTaRS3.1			BI913410	CAMK2N1	chr1	20809597	-	CAMK2N1	chr1	20809625	+
3UTR-3CDS	ENST00000402676	ENST00000402676		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000402676	ENST00000253332		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000402676	ENST00000354675		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000402676	ENST00000359755		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-intron	ENST00000402676	ENST00000490177		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000253332	ENST00000402676		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000253332	ENST00000253332		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000253332	ENST00000354675		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000253332	ENST00000359755		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-intron	ENST00000253332	ENST00000490177		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000354675	ENST00000402676		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000354675	ENST00000253332		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000354675	ENST00000354675		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000354675	ENST00000359755		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-intron	ENST00000354675	ENST00000490177		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000359755	ENST00000402676		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000359755	ENST00000253332		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000359755	ENST00000354675		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-3CDS	ENST00000359755	ENST00000359755		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
3UTR-intron	ENST00000359755	ENST00000490177		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
intron-3CDS	ENST00000490177	ENST00000402676		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
intron-3CDS	ENST00000490177	ENST00000253332		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
intron-3CDS	ENST00000490177	ENST00000354675		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
intron-3CDS	ENST00000490177	ENST00000359755		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
intron-intron	ENST00000490177	ENST00000490177		ChiTaRS3.1			BM721250	AKAP12	chr6	151676935	+	AKAP12	chr6	151674309	+
intron-3UTR	ENST00000350638	ENST00000335420		ChiTaRS3.1			M62120	ELP4	chr11	31548001	-	KLHDC10	chr7	129775520	-
intron-intron	ENST00000350638	ENST00000495724		ChiTaRS3.1			M62120	ELP4	chr11	31548001	-	KLHDC10	chr7	129775520	-
intron-3UTR	ENST00000379163	ENST00000335420		ChiTaRS3.1			M62120	ELP4	chr11	31548001	-	KLHDC10	chr7	129775520	-
intron-intron	ENST00000379163	ENST00000495724		ChiTaRS3.1			M62120	ELP4	chr11	31548001	-	KLHDC10	chr7	129775520	-
intron-3UTR	ENST00000395934	ENST00000335420		ChiTaRS3.1			M62120	ELP4	chr11	31548001	-	KLHDC10	chr7	129775520	-
intron-intron	ENST00000395934	ENST00000495724		ChiTaRS3.1			M62120	ELP4	chr11	31548001	-	KLHDC10	chr7	129775520	-
intron-intron	ENST00000233202	ENST00000233202		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000233202	ENST00000473367		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000233202	ENST00000539932		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000473367	ENST00000233202		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000473367	ENST00000473367		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000473367	ENST00000539932		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000539932	ENST00000233202		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000539932	ENST00000473367		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000539932	ENST00000539932		ChiTaRS3.1			BC037550	SLC11A1	chr2	219259358	+	SLC11A1	chr2	219248410	+
intron-intron	ENST00000337836	ENST00000342160		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000337836	ENST00000262854		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000337836	ENST00000474288		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000337836	ENST00000218328		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000263413	ENST00000342160		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000263413	ENST00000262854		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000263413	ENST00000474288		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000263413	ENST00000218328		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000475349	ENST00000342160		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000475349	ENST00000262854		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000475349	ENST00000474288		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
intron-intron	ENST00000475349	ENST00000218328		ChiTaRS3.1			BE764210	C6	chr5	41150099	-	HUWE1	chrX	53621462	+
Frame-shit	ENST00000381967	ENST00000381967		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
5CDS-5UTR	ENST00000381967	ENST00000544359		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
5CDS-intron	ENST00000381967	ENST00000537241		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
Frame-shit	ENST00000544359	ENST00000381967		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
5CDS-5UTR	ENST00000544359	ENST00000544359		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
5CDS-intron	ENST00000544359	ENST00000537241		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
Frame-shit	ENST00000537241	ENST00000381967		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
5CDS-5UTR	ENST00000537241	ENST00000544359		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
5CDS-intron	ENST00000537241	ENST00000537241		ChiTaRS3.1			AA410910	PGM2	chr4	37841704	-	PGM2	chr4	37836313	+
intron-intron	ENST00000429644	ENST00000564353		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000429644	ENST00000345005		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000429644	ENST00000395066		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000429644	ENST00000348245		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000429644	ENST00000352989		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000489715	ENST00000564353		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000489715	ENST00000345005		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000489715	ENST00000395066		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000489715	ENST00000348245		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000489715	ENST00000352989		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000477426	ENST00000564353		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000477426	ENST00000345005		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000477426	ENST00000395066		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000477426	ENST00000348245		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000477426	ENST00000352989		ChiTaRS3.1			BX115220	GBE1	chr3	81648443	+	CLK3	chr15	74899404	+
intron-intron	ENST00000373666	ENST00000438447		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000373666	ENST00000282493		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000373666	ENST00000513490		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000309931	ENST00000438447		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000309931	ENST00000282493		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000309931	ENST00000513490		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000545118	ENST00000438447		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000545118	ENST00000282493		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000545118	ENST00000513490		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000472604	ENST00000438447		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000472604	ENST00000282493		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-intron	ENST00000472604	ENST00000513490		ChiTaRS3.1			CB067540	DAW1	chr2	228738651	-	PDZD2	chr5	32062978	+
intron-3UTR	ENST00000396062	ENST00000335312		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000396062	ENST00000539785		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000396062	ENST00000589578		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000396062	ENST00000537021		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000396062	ENST00000587482		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-3UTR	ENST00000216330	ENST00000335312		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000216330	ENST00000539785		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000216330	ENST00000589578		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000216330	ENST00000537021		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-intron	ENST00000216330	ENST00000587482		ChiTaRS3.1			M90820	FKBP3	chr14	45585136	-	PIP5K1C	chr19	3630214	+
intron-5UTR	ENST00000397683	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397683	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397683	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397683	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397683	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000397683	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397683	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000291691	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000291691	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000291691	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000291691	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000291691	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000291691	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000291691	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397682	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397682	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397682	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397682	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397682	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000397682	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397682	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397679	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397679	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397679	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397679	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397679	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000397679	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397679	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397680	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397680	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397680	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397680	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397680	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000397680	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397680	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000472607	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000472607	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000472607	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000472607	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000472607	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000472607	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000472607	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397685	ENST00000397683		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397685	ENST00000291691		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397685	ENST00000397682		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397685	ENST00000397679		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397685	ENST00000397680		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-intron	ENST00000397685	ENST00000472607		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
intron-5UTR	ENST00000397685	ENST00000397685		ChiTaRS3.1			CB856840	C21orf58	chr21	47721379	-	C21orf58	chr21	47738031	-
Frame-shit	ENST00000246337	ENST00000246337		ChiTaRS3.1			AA368910	UROD	chr1	45481049	-	UROD	chr1	45479387	+
5CDS-3UTR	ENST00000246337	ENST00000494399		ChiTaRS3.1			AA368910	UROD	chr1	45481049	-	UROD	chr1	45479387	+
3UTR-3CDS	ENST00000494399	ENST00000246337		ChiTaRS3.1			AA368910	UROD	chr1	45481049	-	UROD	chr1	45479387	+
3UTR-3UTR	ENST00000494399	ENST00000494399		ChiTaRS3.1			AA368910	UROD	chr1	45481049	-	UROD	chr1	45479387	+
intron-3UTR	ENST00000217195	ENST00000286201		ChiTaRS3.1			H27770	C20orf27	chr20	3734307	+	FZD7	chr2	202902569	+
intron-3UTR	ENST00000379772	ENST00000286201		ChiTaRS3.1			H27770	C20orf27	chr20	3734307	+	FZD7	chr2	202902569	+
5CDS-3UTR	ENST00000435881	ENST00000435881		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000435881	ENST00000246912		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000435881	ENST00000346833		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000246912	ENST00000435881		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000246912	ENST00000246912		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000246912	ENST00000346833		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000346833	ENST00000435881		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000346833	ENST00000246912		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
5CDS-3UTR	ENST00000346833	ENST00000346833		ChiTaRS3.1			BE085890	MLX	chr17	40722062	-	MLX	chr17	40723723	+
3UTR-3CDS	ENST00000356978	ENST00000504734		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
3UTR-3CDS	ENST00000356978	ENST00000415618		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
3UTR-3CDS	ENST00000356978	ENST00000452673		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
3UTR-3CDS	ENST00000356978	ENST00000247461		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
3UTR-3CDS	ENST00000356978	ENST00000512607		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
3UTR-intron	ENST00000356978	ENST00000503126		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000447653	ENST00000504734		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000447653	ENST00000415618		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000447653	ENST00000452673		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000447653	ENST00000247461		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000447653	ENST00000512607		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-intron	ENST00000447653	ENST00000503126		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000555132	ENST00000504734		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000555132	ENST00000415618		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000555132	ENST00000452673		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000555132	ENST00000247461		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000555132	ENST00000512607		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-intron	ENST00000555132	ENST00000503126		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000553542	ENST00000504734		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000553542	ENST00000415618		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000553542	ENST00000452673		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000553542	ENST00000247461		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000553542	ENST00000512607		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-intron	ENST00000553542	ENST00000503126		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000544280	ENST00000504734		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000544280	ENST00000415618		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000544280	ENST00000452673		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000544280	ENST00000247461		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-3CDS	ENST00000544280	ENST00000512607		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-intron	ENST00000544280	ENST00000503126		ChiTaRS3.1			BF949860	CALM1	chr14	90872966	-	CANX	chr5	179146768	-
intron-intron	ENST00000425117	ENST00000560371		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000425117	ENST00000347662		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000425117	ENST00000392745		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000425117	ENST00000539721		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000425117	ENST00000351691		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000394422	ENST00000560371		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000394422	ENST00000347662		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000394422	ENST00000392745		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000394422	ENST00000539721		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000394422	ENST00000351691		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371051	ENST00000560371		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371051	ENST00000347662		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371051	ENST00000392745		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371051	ENST00000539721		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371051	ENST00000351691		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371042	ENST00000560371		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371042	ENST00000347662		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371042	ENST00000392745		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371042	ENST00000539721		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000371042	ENST00000351691		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000498179	ENST00000560371		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000498179	ENST00000347662		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000498179	ENST00000392745		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000498179	ENST00000539721		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000498179	ENST00000351691		ChiTaRS3.1			AW860540	UTP14A	chrX	129048976	+	TRAF3	chr14	103265993	+
intron-intron	ENST00000306107	ENST00000225235		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000306107	ENST00000485048		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000472644	ENST00000225235		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000472644	ENST00000485048		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000481337	ENST00000225235		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000481337	ENST00000485048		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000486979	ENST00000225235		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000486979	ENST00000485048		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000389927	ENST00000225235		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000389927	ENST00000485048		ChiTaRS3.1			BF747790	ALCAM	chr3	105222174	-	TBC1D12	chr10	96201776	-
intron-intron	ENST00000405271	ENST00000402738		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000405271	ENST00000407637		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000405271	ENST00000601319		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000405271	ENST00000264345		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000405271	ENST00000543130		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000263735	ENST00000402738		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000263735	ENST00000407637		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000263735	ENST00000601319		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000263735	ENST00000264345		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-intron	ENST00000263735	ENST00000543130		ChiTaRS3.1			BE177710	EPCAM	chr2	47602378	-	HERC3	chr4	89573446	-
intron-3UTR	ENST00000300747	ENST00000300747		ChiTaRS3.1			CB217200	TRIM68	chr11	4626525	+	TRIM68	chr11	4620288	+
intron-intron	ENST00000483233	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000483233	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000483233	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000315877	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000315877	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000315877	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000487005	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000487005	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000487005	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000395008	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000395008	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000395008	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000361143	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000361143	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000361143	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000461108	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000461108	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000461108	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000525795	ENST00000454817		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000525795	ENST00000328333		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000525795	ENST00000470076		ChiTaRS3.1			BU615800	ABHD14B	chr3	52007850	+	COL7A1	chr3	48627180	+
intron-intron	ENST00000397786	ENST00000333229		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000397786	ENST00000342449		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000397786	ENST00000380800		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-3UTR	ENST00000397786	ENST00000341322		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000397786	ENST00000470108		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000580896	ENST00000333229		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000580896	ENST00000342449		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000580896	ENST00000380800		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-3UTR	ENST00000580896	ENST00000341322		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000580896	ENST00000470108		ChiTaRS3.1			AV730350	MED13	chr17	60036745	+	BRWD1	chr21	40668537	-
intron-intron	ENST00000331397	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000331397	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382896	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000537580	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000362096	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000329134	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000538878	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000540140	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000545955	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000474365	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000331397		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000382896		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000537580		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000362096		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000329134		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000538878		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000540140		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000545955		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000474365		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-intron	ENST00000382893	ENST00000382893		ChiTaRS3.1			AA744810	UTY	chrY	15359372	+	UTY	chrY	15358063	+
intron-3CDS	ENST00000206423	ENST00000352140		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000206423	ENST00000594404		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000206423	ENST00000367376		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000206423	ENST00000442510		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000206423	ENST00000348564		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000206423	ENST00000598951		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000206423	ENST00000367364		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000206423	ENST00000413409		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000206423	ENST00000391970		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000439685	ENST00000352140		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000439685	ENST00000594404		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000439685	ENST00000367376		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000439685	ENST00000442510		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000439685	ENST00000348564		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000439685	ENST00000598951		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000439685	ENST00000367364		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000439685	ENST00000413409		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000439685	ENST00000391970		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000475181	ENST00000352140		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000475181	ENST00000594404		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000475181	ENST00000367376		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000475181	ENST00000442510		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-3CDS	ENST00000475181	ENST00000348564		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000475181	ENST00000598951		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000475181	ENST00000367364		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000475181	ENST00000413409		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000475181	ENST00000391970		ChiTaRS3.1			AI587210	CCDC80	chr3	112324340	+	PTPRC	chr1	198719675	-
intron-intron	ENST00000539909	ENST00000370440		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000539909	ENST00000347275		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000539909	ENST00000337393		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000539909	ENST00000361321		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000539909	ENST00000467231		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000286621	ENST00000370440		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000286621	ENST00000347275		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000286621	ENST00000337393		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000286621	ENST00000361321		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000286621	ENST00000467231		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000372734	ENST00000370440		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000372734	ENST00000347275		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000372734	ENST00000337393		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000372734	ENST00000361321		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000372734	ENST00000467231		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000541550	ENST00000370440		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000541550	ENST00000347275		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000541550	ENST00000337393		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000541550	ENST00000361321		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000541550	ENST00000467231		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000467840	ENST00000370440		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000467840	ENST00000347275		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000467840	ENST00000337393		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000467840	ENST00000361321		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-intron	ENST00000467840	ENST00000467231		ChiTaRS3.1			BM671160	ADK	chr10	76300474	-	ZNF644	chr1	91394007	+
intron-3UTR	ENST00000554546	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000554546	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000554546	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000554546	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000554546	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000554546	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000356296	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000356296	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000356296	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000356296	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000356296	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000356296	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000557597	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000557597	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000557597	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000557597	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000557597	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000557597	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555238	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555238	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555238	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555238	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555238	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555238	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000355058	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000355058	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000355058	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000355058	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000355058	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000355058	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000359560	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000359560	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000359560	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000359560	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000359560	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000359560	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555394	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555394	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555394	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555394	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555394	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555394	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000454166	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000454166	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000454166	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000454166	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000454166	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000454166	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000544991	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000544991	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000544991	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000544991	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000544991	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000544991	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000560335	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000560335	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000560335	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000560335	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000560335	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000560335	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555738	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555738	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000555738	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555738	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555738	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000555738	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000559312	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000559312	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000559312	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000559312	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000559312	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000559312	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000554521	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000554521	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000554521	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000554521	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000554521	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000554521	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000535282	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000535282	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000535282	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000535282	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000535282	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000535282	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000556600	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000556600	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000556600	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000556600	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000556600	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000556600	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000556772	ENST00000282120		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000556772	ENST00000377386		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000556772	ENST00000398263		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000556772	ENST00000409232		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000556772	ENST00000409015		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-intron	ENST00000556772	ENST00000444342		ChiTaRS3.1			BG996670	NUMB	chr14	73756499	-	TGOLN2	chr2	85545740	+
intron-3UTR	ENST00000315717	ENST00000315251		ChiTaRS3.1			BF930030	ARPC2	chr2	219100136	+	CHDH	chr3	53850949	+
intron-3UTR	ENST00000295685	ENST00000315251		ChiTaRS3.1			BF930030	ARPC2	chr2	219100136	+	CHDH	chr3	53850949	+
3UTR-3UTR	ENST00000477992	ENST00000315251		ChiTaRS3.1			BF930030	ARPC2	chr2	219100136	+	CHDH	chr3	53850949	+
intron-3UTR	ENST00000537971	ENST00000367681		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000537971	ENST00000367679		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000537971	ENST00000406752		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000537971	ENST00000405362		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000011898	ENST00000367681		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000011898	ENST00000367679		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000011898	ENST00000406752		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000011898	ENST00000405362		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000407263	ENST00000367681		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000407263	ENST00000367679		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000407263	ENST00000406752		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000407263	ENST00000405362		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000492305	ENST00000367681		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-3UTR	ENST00000492305	ENST00000367679		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000492305	ENST00000406752		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
intron-intron	ENST00000492305	ENST00000405362		ChiTaRS3.1			BG942830	TSPAN9	chr12	3320830	+	CACYBP	chr1	174979486	-
In-frame	ENST00000343150	ENST00000343150		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
In-frame	ENST00000343150	ENST00000340342		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
5CDS-intron	ENST00000343150	ENST00000495822		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
5CDS-intron	ENST00000343150	ENST00000342020		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
In-frame	ENST00000340342	ENST00000343150		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
In-frame	ENST00000340342	ENST00000340342		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
5CDS-intron	ENST00000340342	ENST00000495822		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
5CDS-intron	ENST00000340342	ENST00000342020		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
intron-3CDS	ENST00000495822	ENST00000343150		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
intron-3CDS	ENST00000495822	ENST00000340342		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
intron-intron	ENST00000495822	ENST00000495822		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
intron-intron	ENST00000495822	ENST00000342020		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
In-frame	ENST00000342020	ENST00000343150		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
In-frame	ENST00000342020	ENST00000340342		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
5CDS-intron	ENST00000342020	ENST00000495822		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
5CDS-intron	ENST00000342020	ENST00000342020		ChiTaRS3.1			BF994660	CTSL	chr9	90343231	-	CTSL	chr9	90343550	+
intron-3UTR	ENST00000396271	ENST00000392011		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000396271	ENST00000409212		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000396271	ENST00000344528		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-intron	ENST00000396271	ENST00000489601		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375901	ENST00000392011		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375901	ENST00000409212		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375901	ENST00000344528		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-intron	ENST00000375901	ENST00000489601		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375905	ENST00000392011		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375905	ENST00000409212		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375905	ENST00000344528		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-intron	ENST00000375905	ENST00000489601		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375897	ENST00000392011		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375897	ENST00000409212		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375897	ENST00000344528		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-intron	ENST00000375897	ENST00000489601		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375888	ENST00000392011		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375888	ENST00000409212		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000375888	ENST00000344528		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-intron	ENST00000375888	ENST00000489601		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000476758	ENST00000392011		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000476758	ENST00000409212		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3UTR	ENST00000476758	ENST00000344528		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-intron	ENST00000476758	ENST00000489601		ChiTaRS3.1			BF507610	ACBD5	chr10	27484264	+	SH3BP4	chr2	235964016	+
intron-3CDS	ENST00000367718	ENST00000342016		ChiTaRS3.1			BF826300	TNFSF4	chr1	173157970	+	CIR1	chr2	175216380	+
intron-3CDS	ENST00000367718	ENST00000362053		ChiTaRS3.1			BF826300	TNFSF4	chr1	173157970	+	CIR1	chr2	175216380	+
intron-3CDS	ENST00000281834	ENST00000342016		ChiTaRS3.1			BF826300	TNFSF4	chr1	173157970	+	CIR1	chr2	175216380	+
intron-3CDS	ENST00000281834	ENST00000362053		ChiTaRS3.1			BF826300	TNFSF4	chr1	173157970	+	CIR1	chr2	175216380	+
intron-3CDS	ENST00000488053	ENST00000342016		ChiTaRS3.1			BF826300	TNFSF4	chr1	173157970	+	CIR1	chr2	175216380	+
intron-3CDS	ENST00000488053	ENST00000362053		ChiTaRS3.1			BF826300	TNFSF4	chr1	173157970	+	CIR1	chr2	175216380	+
Frame-shit	ENST00000314616	ENST00000314616		ChiTaRS3.1			BF086370	SUPT6H	chr17	27018017	-	SUPT6H	chr17	27017944	+
Frame-shit	ENST00000314616	ENST00000347486		ChiTaRS3.1			BF086370	SUPT6H	chr17	27018017	-	SUPT6H	chr17	27017944	+
Frame-shit	ENST00000347486	ENST00000314616		ChiTaRS3.1			BF086370	SUPT6H	chr17	27018017	-	SUPT6H	chr17	27017944	+
Frame-shit	ENST00000347486	ENST00000347486		ChiTaRS3.1			BF086370	SUPT6H	chr17	27018017	-	SUPT6H	chr17	27017944	+
intron-3UTR	ENST00000478827	ENST00000225964		ChiTaRS3.1			BM723940	SLC25A15	chr13	41386451	+	COL1A1	chr17	48261568	-
intron-3UTR	ENST00000338625	ENST00000225964		ChiTaRS3.1			BM723940	SLC25A15	chr13	41386451	+	COL1A1	chr17	48261568	-
intron-intron	ENST00000512560	ENST00000512560		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000512560	ENST00000509852		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000512560	ENST00000512528		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000509852	ENST00000512560		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000509852	ENST00000509852		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000509852	ENST00000512528		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000512528	ENST00000512560		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000512528	ENST00000509852		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000512528	ENST00000512528		ChiTaRS3.1			CB243740	MTX3	chr5	79272654	+	MTX3	chr5	79273100	-
intron-intron	ENST00000380649	ENST00000323541		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000454838		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000449825		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000323578		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000429789		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000336845		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000528581		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000436108		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000380649	ENST00000526714		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000323541		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000454838		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000449825		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000323578		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000429789		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000336845		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000528581		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000436108		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000457468	ENST00000526714		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000323541		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000454838		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000449825		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000323578		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000429789		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000336845		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000528581		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000436108		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-intron	ENST00000461025	ENST00000526714		ChiTaRS3.1			AA873450	HADHA	chr2	26414098	+	CHID1	chr11	904706	+
intron-3CDS	ENST00000303407	ENST00000303407		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000303407	ENST00000473349		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000303407	ENST00000371834		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000303407	ENST00000357885		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3CDS	ENST00000473349	ENST00000303407		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000473349	ENST00000473349		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000473349	ENST00000371834		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000473349	ENST00000357885		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3CDS	ENST00000371834	ENST00000303407		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000371834	ENST00000473349		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000371834	ENST00000371834		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000371834	ENST00000357885		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3CDS	ENST00000357885	ENST00000303407		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000357885	ENST00000473349		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000357885	ENST00000371834		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000357885	ENST00000357885		ChiTaRS3.1			N27250	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000216281	ENST00000557878		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000216281	ENST00000559275		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000216281	ENST00000324103		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000216281	ENST00000382687		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000334701	ENST00000557878		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000334701	ENST00000559275		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000334701	ENST00000324103		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000334701	ENST00000382687		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000441629	ENST00000557878		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000441629	ENST00000559275		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000441629	ENST00000324103		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000441629	ENST00000382687		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000558600	ENST00000557878		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000558600	ENST00000559275		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000558600	ENST00000324103		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000558600	ENST00000382687		ChiTaRS3.1			BU675940	HSP90AA1	chr14	102551263	+	RNF31	chr14	24635672	+
intron-intron	ENST00000370206	ENST00000370206		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000538964		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000394202		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000545882		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000487539		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000370206		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000538964		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000394202		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000545882		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000487539		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000370206		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000538964		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000394202		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000545882		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000487539		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000370206		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000538964		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000394202		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000545882		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000487539		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000370206		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000538964		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000394202		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000545882		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000487539		ChiTaRS3.1			AI247480	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000376007	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376007	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376007	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376007	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376007	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000469577	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000469577	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000469577	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000469577	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000469577	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376033	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376033	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376033	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376033	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000376033	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000549037	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000549037	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000549037	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000549037	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000549037	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551794	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551794	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551794	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551794	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551794	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000435971	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000435971	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000435971	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000435971	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000435971	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000485195	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000485195	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000485195	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000485195	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000485195	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000428775	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000428775	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000428775	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000428775	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000428775	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550674	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550674	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550674	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550674	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550674	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000548373	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000548373	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000548373	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000548373	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000548373	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000439762	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000439762	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000439762	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000439762	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000439762	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000416335	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000416335	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000416335	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000416335	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000416335	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000473169	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000473169	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000473169	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000473169	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000473169	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550109	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550109	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550109	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550109	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550109	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550609	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550609	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550609	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550609	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000550609	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000454306	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000454306	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000454306	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000454306	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000454306	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000468994	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000468994	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000468994	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000468994	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000468994	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000432252	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000432252	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000432252	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000432252	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000432252	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551341	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551341	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551341	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551341	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000551341	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000547457	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000547457	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000547457	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000547457	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000547457	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383464	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383464	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383464	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383464	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383464	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000470109	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000470109	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000470109	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000470109	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000470109	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383455	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383455	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383455	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383455	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000383455	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000547056	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000547056	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000547056	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000547056	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000547056	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000549383	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000549383	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000549383	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000549383	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000549383	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000458561	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000458561	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000458561	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000458561	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000458561	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000466607	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000466607	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000466607	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000466607	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000466607	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000414956	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000414956	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000414956	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000414956	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
5CDS-intron	ENST00000414956	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000547669	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000547669	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000547669	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000547669	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000547669	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000549768	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000549768	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000549768	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000549768	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000549768	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000430737	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000430737	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000430737	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000430737	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000430737	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000484613	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000484613	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000484613	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000484613	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-intron	ENST00000484613	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000422962	ENST00000258499		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000422962	ENST00000393091		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000422962	ENST00000552440		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000422962	ENST00000537435		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
3UTR-intron	ENST00000422962	ENST00000547951		ChiTaRS3.1			AW974550	PRRC2A	chr6	2936268	-	USP44	chr12	95921521	+
intron-3UTR	ENST00000395324	ENST00000395324		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000395324	ENST00000229022		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000395324	ENST00000549336		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000395324	ENST00000550325		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-intron	ENST00000395324	ENST00000535672		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000229022	ENST00000395324		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000229022	ENST00000229022		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000229022	ENST00000549336		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000229022	ENST00000550325		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-intron	ENST00000229022	ENST00000535672		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000549336	ENST00000395324		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000549336	ENST00000229022		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000549336	ENST00000549336		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000549336	ENST00000550325		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-intron	ENST00000549336	ENST00000535672		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000550325	ENST00000395324		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000550325	ENST00000229022		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000550325	ENST00000549336		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000550325	ENST00000550325		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-intron	ENST00000550325	ENST00000535672		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000535672	ENST00000395324		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000535672	ENST00000229022		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000535672	ENST00000549336		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-3UTR	ENST00000535672	ENST00000550325		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
intron-intron	ENST00000535672	ENST00000535672		ChiTaRS3.1			AA843290	VDR	chr12	48237354	+	VDR	chr12	48236855	-
3UTR-intron	ENST00000583195	ENST00000537875		ChiTaRS3.1			BU742170	LINC00672	chr17	37084016	+	COL14A1	chr8	121351506	+
3UTR-intron	ENST00000583195	ENST00000309791		ChiTaRS3.1			BU742170	LINC00672	chr17	37084016	+	COL14A1	chr8	121351506	+
3UTR-intron	ENST00000583195	ENST00000297848		ChiTaRS3.1			BU742170	LINC00672	chr17	37084016	+	COL14A1	chr8	121351506	+
3UTR-intron	ENST00000583195	ENST00000247781		ChiTaRS3.1			BU742170	LINC00672	chr17	37084016	+	COL14A1	chr8	121351506	+
3UTR-intron	ENST00000583195	ENST00000432943		ChiTaRS3.1			BU742170	LINC00672	chr17	37084016	+	COL14A1	chr8	121351506	+
intron-intron	ENST00000367816	ENST00000359373		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000495878		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000455638		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000393605		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000334211		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000393609		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000426523		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367816	ENST00000429686		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000359373		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000495878		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000455638		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000393605		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000334211		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000393609		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000426523		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367815	ENST00000429686		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000359373		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000495878		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000455638		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000393605		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000334211		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000393609		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000426523		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000499679	ENST00000429686		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000359373		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000495878		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000455638		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000393605		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000334211		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000393609		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000426523		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
intron-intron	ENST00000367813	ENST00000429686		ChiTaRS3.1			AI902440	ATP1B1	chr1	169077152	-	ARAP1	chr11	72492052	-
3UTR-3UTR	ENST00000249760	ENST00000534336		ChiTaRS3.1			AI928420	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
intron-3UTR	ENST00000490194	ENST00000534336		ChiTaRS3.1			AI928420	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
intron-3UTR	ENST00000487418	ENST00000534336		ChiTaRS3.1			AI928420	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
3UTR-3UTR	ENST00000479013	ENST00000534336		ChiTaRS3.1			AI928420	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
intron-intron	ENST00000269033	ENST00000269033		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000269033	ENST00000540801		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000269033	ENST00000324677		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000269033	ENST00000582084		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000269033	ENST00000590153		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000269033	ENST00000579954		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000540801	ENST00000269033		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000540801	ENST00000540801		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000540801	ENST00000324677		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000540801	ENST00000582084		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000540801	ENST00000590153		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000540801	ENST00000579954		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000324677	ENST00000269033		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000324677	ENST00000540801		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000324677	ENST00000324677		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000324677	ENST00000582084		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000324677	ENST00000590153		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000324677	ENST00000579954		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000582084	ENST00000269033		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000582084	ENST00000540801		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000582084	ENST00000324677		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000582084	ENST00000582084		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000582084	ENST00000590153		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000582084	ENST00000579954		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000590153	ENST00000269033		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000590153	ENST00000540801		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000590153	ENST00000324677		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000590153	ENST00000582084		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000590153	ENST00000590153		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000590153	ENST00000579954		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000579954	ENST00000269033		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000579954	ENST00000540801		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000579954	ENST00000324677		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000579954	ENST00000582084		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000579954	ENST00000590153		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-intron	ENST00000579954	ENST00000579954		ChiTaRS3.1			CV353650	SSH2	chr17	28256167	-	SSH2	chr17	28256282	+
intron-3UTR	ENST00000410022	ENST00000261267		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000410022	ENST00000549690		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000410022	ENST00000548839		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-3UTR	ENST00000471185	ENST00000261267		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000471185	ENST00000549690		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000471185	ENST00000548839		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-3UTR	ENST00000303698	ENST00000261267		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000303698	ENST00000549690		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000303698	ENST00000548839		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-3UTR	ENST00000394305	ENST00000261267		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000394305	ENST00000549690		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000394305	ENST00000548839		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-3UTR	ENST00000462320	ENST00000261267		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000462320	ENST00000549690		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
intron-intron	ENST00000462320	ENST00000548839		ChiTaRS3.1			BE720550	NFU1	chr2	69661580	-	LYZ	chr12	69747539	+
5CDS-3UTR	ENST00000397801	ENST00000397801		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000397801	ENST00000538940		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000397801	ENST00000525482		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000397801	ENST00000543966		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000538940	ENST00000397801		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000538940	ENST00000538940		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000538940	ENST00000525482		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5CDS-3UTR	ENST00000538940	ENST00000543966		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
3UTR-3UTR	ENST00000525482	ENST00000397801		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
3UTR-3UTR	ENST00000525482	ENST00000538940		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
3UTR-3UTR	ENST00000525482	ENST00000525482		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
3UTR-3UTR	ENST00000525482	ENST00000543966		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5UTR-3UTR	ENST00000543966	ENST00000397801		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5UTR-3UTR	ENST00000543966	ENST00000538940		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5UTR-3UTR	ENST00000543966	ENST00000525482		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
5UTR-3UTR	ENST00000543966	ENST00000543966		ChiTaRS3.1			AI279880	ROBO3	chr11	124747484	-	ROBO3	chr11	124751213	-
intron-3UTR	ENST00000265340	ENST00000270792		ChiTaRS3.1			BF912850	PITX1	chr5	134367990	+	SH3BGRL3	chr1	26607655	+
intron-3UTR	ENST00000265340	ENST00000319041		ChiTaRS3.1			BF912850	PITX1	chr5	134367990	+	SH3BGRL3	chr1	26607655	+
intron-3UTR	ENST00000506438	ENST00000270792		ChiTaRS3.1			BF912850	PITX1	chr5	134367990	+	SH3BGRL3	chr1	26607655	+
intron-3UTR	ENST00000506438	ENST00000319041		ChiTaRS3.1			BF912850	PITX1	chr5	134367990	+	SH3BGRL3	chr1	26607655	+
intron-3CDS	ENST00000382369	ENST00000301067		ChiTaRS3.1			AA862350	C20orf96	chr20	256679	+	KMT2D	chr12	49437684	+
intron-intron	ENST00000382369	ENST00000549743		ChiTaRS3.1			AA862350	C20orf96	chr20	256679	+	KMT2D	chr12	49437684	+
intron-3CDS	ENST00000360321	ENST00000301067		ChiTaRS3.1			AA862350	C20orf96	chr20	256679	+	KMT2D	chr12	49437684	+
intron-intron	ENST00000360321	ENST00000549743		ChiTaRS3.1			AA862350	C20orf96	chr20	256679	+	KMT2D	chr12	49437684	+
intron-3CDS	ENST00000400269	ENST00000301067		ChiTaRS3.1			AA862350	C20orf96	chr20	256679	+	KMT2D	chr12	49437684	+
intron-intron	ENST00000400269	ENST00000549743		ChiTaRS3.1			AA862350	C20orf96	chr20	256679	+	KMT2D	chr12	49437684	+
intron-intron	ENST00000371471	ENST00000261716		ChiTaRS3.1			AW794770	ZNF217	chr20	52184120	-	TAOK1	chr17	27779435	+
intron-intron	ENST00000371471	ENST00000536202		ChiTaRS3.1			AW794770	ZNF217	chr20	52184120	-	TAOK1	chr17	27779435	+
intron-intron	ENST00000302342	ENST00000261716		ChiTaRS3.1			AW794770	ZNF217	chr20	52184120	-	TAOK1	chr17	27779435	+
intron-intron	ENST00000302342	ENST00000536202		ChiTaRS3.1			AW794770	ZNF217	chr20	52184120	-	TAOK1	chr17	27779435	+
intron-intron	ENST00000540425	ENST00000261716		ChiTaRS3.1			AW794770	ZNF217	chr20	52184120	-	TAOK1	chr17	27779435	+
intron-intron	ENST00000540425	ENST00000536202		ChiTaRS3.1			AW794770	ZNF217	chr20	52184120	-	TAOK1	chr17	27779435	+
5UTR-3UTR	ENST00000426851	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000426851	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
3UTR-3UTR	ENST00000485111	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
3UTR-3UTR	ENST00000485111	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000420008	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000420008	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5CDS-3UTR	ENST00000475153	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5CDS-3UTR	ENST00000475153	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000483892	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000483892	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000491174	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000491174	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5CDS-3UTR	ENST00000540950	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5CDS-3UTR	ENST00000540950	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000335901	ENST00000305943		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5UTR-3UTR	ENST00000335901	ENST00000482739		ChiTaRS3.1			AW837820	ZNF398	chr7	148851356	-	RNF187	chr1	228682146	+
5CDS-intron	ENST00000405271	ENST00000353170		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000405271	ENST00000347925		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000405271	ENST00000566349		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000405271	ENST00000270583		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000263735	ENST00000353170		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000263735	ENST00000347925		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000263735	ENST00000566349		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
5CDS-intron	ENST00000263735	ENST00000270583		ChiTaRS3.1			BI047590	EPCAM	chr2	47601086	+	KLHDC4	chr16	87732190	+
intron-intron	ENST00000370231	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370231	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000393862	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000402951	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000414588	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000334497	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000370232	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000330912	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000342183		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000401710		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000404971		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000406316		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000405472		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000401669		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000406859		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000402717		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000331040		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-intron	ENST00000338525	ENST00000405581		ChiTaRS3.1			X99270	TREX2	chrX	152713126	-	NRXN1	chr2	51083187	+
intron-3UTR	ENST00000377298	ENST00000494857		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-intron	ENST00000377298	ENST00000522656		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377298	ENST00000470360		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377298	ENST00000004531		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377298	ENST00000398090		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000361311	ENST00000494857		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-intron	ENST00000361311	ENST00000522656		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000361311	ENST00000470360		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000361311	ENST00000004531		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000361311	ENST00000398090		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377288	ENST00000494857		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-intron	ENST00000377288	ENST00000522656		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377288	ENST00000470360		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377288	ENST00000004531		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000377288	ENST00000398090		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000477264	ENST00000494857		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-intron	ENST00000477264	ENST00000522656		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000477264	ENST00000470360		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000477264	ENST00000004531		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3UTR	ENST00000477264	ENST00000398090		ChiTaRS3.1			BP395070	CLSTN1	chr1	9789921	+	SLC7A2	chr8	17427501	+
intron-3CDS	ENST00000361157	ENST00000317508		ChiTaRS3.1			AA193290	IFI6	chr1	27992702	+	PRSS8	chr16	31144126	+
intron-3CDS	ENST00000361157	ENST00000568261		ChiTaRS3.1			AA193290	IFI6	chr1	27992702	+	PRSS8	chr16	31144126	+
intron-3CDS	ENST00000339145	ENST00000317508		ChiTaRS3.1			AA193290	IFI6	chr1	27992702	+	PRSS8	chr16	31144126	+
intron-3CDS	ENST00000339145	ENST00000568261		ChiTaRS3.1			AA193290	IFI6	chr1	27992702	+	PRSS8	chr16	31144126	+
intron-3CDS	ENST00000362020	ENST00000317508		ChiTaRS3.1			AA193290	IFI6	chr1	27992702	+	PRSS8	chr16	31144126	+
intron-3CDS	ENST00000362020	ENST00000568261		ChiTaRS3.1			AA193290	IFI6	chr1	27992702	+	PRSS8	chr16	31144126	+
Frame-shit	ENST00000265748	ENST00000265748		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
Frame-shit	ENST00000265748	ENST00000396068		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
5CDS-intron	ENST00000265748	ENST00000495714		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
Frame-shit	ENST00000396068	ENST00000265748		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
Frame-shit	ENST00000396068	ENST00000396068		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
5CDS-intron	ENST00000396068	ENST00000495714		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
3UTR-3CDS	ENST00000495714	ENST00000265748		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
3UTR-3CDS	ENST00000495714	ENST00000396068		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
3UTR-intron	ENST00000495714	ENST00000495714		ChiTaRS3.1			CR936650	ANLN	chr7	36450143	-	ANLN	chr7	36446065	+
5CDS-intron	ENST00000367718	ENST00000415149		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000367718	ENST00000402543		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000367718	ENST00000325805		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000367718	ENST00000416476		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000367718	ENST00000406780		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000367718	ENST00000473542		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000281834	ENST00000415149		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000281834	ENST00000402543		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000281834	ENST00000325805		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000281834	ENST00000416476		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000281834	ENST00000406780		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
5CDS-intron	ENST00000281834	ENST00000473542		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000488053	ENST00000415149		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000488053	ENST00000402543		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000488053	ENST00000325805		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000488053	ENST00000416476		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000488053	ENST00000406780		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000488053	ENST00000473542		ChiTaRS3.1			BF091680	TNFSF4	chr1	173157659	-	BBX	chr3	107441738	+
intron-intron	ENST00000255559	ENST00000359373		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000495878		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000455638		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000393605		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000334211		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000393609		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000426523		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000255559	ENST00000429686		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000359373		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000495878		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000455638		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000393605		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000334211		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000393609		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000426523		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000542342	ENST00000429686		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000359373		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000495878		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000455638		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000393605		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000334211		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000393609		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000426523		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579988	ENST00000429686		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000359373		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000495878		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000455638		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000393605		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000334211		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000393609		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000426523		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000579732	ENST00000429686		ChiTaRS3.1			BF737610	SLC39A11	chr17	71083936	+	ARAP1	chr11	72413158	-
intron-intron	ENST00000175091	ENST00000355831		ChiTaRS3.1			AW377490	LAPTM4A	chr2	20237347	+	BAZ2B	chr2	160230526	-
intron-intron	ENST00000175091	ENST00000343439		ChiTaRS3.1			AW377490	LAPTM4A	chr2	20237347	+	BAZ2B	chr2	160230526	-
intron-intron	ENST00000175091	ENST00000392782		ChiTaRS3.1			AW377490	LAPTM4A	chr2	20237347	+	BAZ2B	chr2	160230526	-
intron-intron	ENST00000175091	ENST00000392783		ChiTaRS3.1			AW377490	LAPTM4A	chr2	20237347	+	BAZ2B	chr2	160230526	-
intron-intron	ENST00000175091	ENST00000483316		ChiTaRS3.1			AW377490	LAPTM4A	chr2	20237347	+	BAZ2B	chr2	160230526	-
3UTR-3UTR	ENST00000399763	ENST00000370790		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000399763	ENST00000343004		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000399763	ENST00000298090		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-intron	ENST00000399763	ENST00000486347		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-intron	ENST00000399763	ENST00000493333		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000399766	ENST00000370790		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000399766	ENST00000343004		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000399766	ENST00000298090		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-intron	ENST00000399766	ENST00000486347		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-intron	ENST00000399766	ENST00000493333		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000374343	ENST00000370790		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000374343	ENST00000343004		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-3UTR	ENST00000374343	ENST00000298090		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-intron	ENST00000374343	ENST00000486347		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
3UTR-intron	ENST00000374343	ENST00000493333		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
intron-3UTR	ENST00000470035	ENST00000370790		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
intron-3UTR	ENST00000470035	ENST00000343004		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
intron-3UTR	ENST00000470035	ENST00000298090		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
intron-intron	ENST00000470035	ENST00000486347		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
intron-intron	ENST00000470035	ENST00000493333		ChiTaRS3.1			AK026660	TMEM57	chr1	25826238	+	FAM122B	chrX	133904072	-
intron-intron	ENST00000567020	ENST00000567020		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000567020	ENST00000293970		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000567020	ENST00000434757		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000293970	ENST00000567020		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000293970	ENST00000293970		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000293970	ENST00000434757		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000434757	ENST00000567020		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000434757	ENST00000293970		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000434757	ENST00000434757		ChiTaRS3.1			AI114460	TBC1D24	chr16	2570169	-	TBC1D24	chr16	2564070	+
intron-intron	ENST00000345807	ENST00000381898		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000345807	ENST00000333082		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000345807	ENST00000246015		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000345807	ENST00000335877		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000345807	ENST00000438768		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-3UTR	ENST00000345807	ENST00000484891		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000310418	ENST00000381898		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000310418	ENST00000333082		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000310418	ENST00000246015		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000310418	ENST00000335877		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000310418	ENST00000438768		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-3UTR	ENST00000310418	ENST00000484891		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000509319	ENST00000381898		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000509319	ENST00000333082		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000509319	ENST00000246015		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000509319	ENST00000335877		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-intron	ENST00000509319	ENST00000438768		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-3UTR	ENST00000509319	ENST00000484891		ChiTaRS3.1			AW170550	CLTB	chr5	175843360	+	PSMF1	chr20	1145721	-
intron-3UTR	ENST00000443891	ENST00000443891		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
intron-3UTR	ENST00000443891	ENST00000273062		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
intron-3UTR	ENST00000443891	ENST00000488627		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
3UTR-3UTR	ENST00000273062	ENST00000443891		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
3UTR-3UTR	ENST00000273062	ENST00000273062		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
3UTR-3UTR	ENST00000273062	ENST00000488627		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
intron-3UTR	ENST00000488627	ENST00000443891		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
intron-3UTR	ENST00000488627	ENST00000273062		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
intron-3UTR	ENST00000488627	ENST00000488627		ChiTaRS3.1			DR156860	CTDSP1	chr2	219270542	+	CTDSP1	chr2	219269369	+
intron-intron	ENST00000494757	ENST00000494757		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-3UTR	ENST00000494757	ENST00000323571		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000494757	ENST00000585043		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000494757	ENST00000394103		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000494757	ENST00000536600		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000494757	ENST00000583130		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
3UTR-intron	ENST00000323571	ENST00000494757		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
3UTR-3UTR	ENST00000323571	ENST00000323571		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
3UTR-intron	ENST00000323571	ENST00000585043		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
3UTR-intron	ENST00000323571	ENST00000394103		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
3UTR-intron	ENST00000323571	ENST00000536600		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
3UTR-intron	ENST00000323571	ENST00000583130		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000585043	ENST00000494757		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-3UTR	ENST00000585043	ENST00000323571		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000585043	ENST00000585043		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000585043	ENST00000394103		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000585043	ENST00000536600		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000585043	ENST00000583130		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000394103	ENST00000494757		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-3UTR	ENST00000394103	ENST00000323571		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000394103	ENST00000585043		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000394103	ENST00000394103		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000394103	ENST00000536600		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000394103	ENST00000583130		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000536600	ENST00000494757		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-3UTR	ENST00000536600	ENST00000323571		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000536600	ENST00000585043		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000536600	ENST00000394103		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000536600	ENST00000536600		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000536600	ENST00000583130		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000583130	ENST00000494757		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-3UTR	ENST00000583130	ENST00000323571		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000583130	ENST00000585043		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000583130	ENST00000394103		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000583130	ENST00000536600		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000583130	ENST00000583130		ChiTaRS3.1			BM718490	WIPF2	chr17	38438516	+	WIPF2	chr17	38436789	+
intron-intron	ENST00000517913	ENST00000527278		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000517913	ENST00000476120		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000517913	ENST00000319636		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000517913	ENST00000545510		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000435422	ENST00000527278		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000435422	ENST00000476120		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000435422	ENST00000319636		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000435422	ENST00000545510		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000447401	ENST00000527278		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000447401	ENST00000476120		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000447401	ENST00000319636		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000447401	ENST00000545510		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000337851	ENST00000527278		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000337851	ENST00000476120		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000337851	ENST00000319636		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
intron-intron	ENST00000337851	ENST00000545510		ChiTaRS3.1			AI033540	SGCD	chr5	156061963	-	ZNF273	chr7	64355248	-
5CDS-5UTR	ENST00000368567	ENST00000435275		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
5CDS-5UTR	ENST00000368567	ENST00000440692		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
5CDS-5UTR	ENST00000368567	ENST00000372360		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
5CDS-intron	ENST00000368567	ENST00000476545		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
5CDS-intron	ENST00000368567	ENST00000360830		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-5UTR	ENST00000392558	ENST00000435275		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-5UTR	ENST00000392558	ENST00000440692		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-5UTR	ENST00000392558	ENST00000372360		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-intron	ENST00000392558	ENST00000476545		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-intron	ENST00000392558	ENST00000360830		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-5UTR	ENST00000493224	ENST00000435275		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-5UTR	ENST00000493224	ENST00000440692		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-5UTR	ENST00000493224	ENST00000372360		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-intron	ENST00000493224	ENST00000476545		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
3UTR-intron	ENST00000493224	ENST00000360830		ChiTaRS3.1			M31520	RPS27	chr1	153964127	-	RPS24	chr10	79793623	+
intron-3CDS	ENST00000340630	ENST00000301740		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-intron	ENST00000340630	ENST00000574593		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-3CDS	ENST00000453009	ENST00000301740		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-intron	ENST00000453009	ENST00000574593		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-3CDS	ENST00000433985	ENST00000301740		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-intron	ENST00000433985	ENST00000574593		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-3CDS	ENST00000476548	ENST00000301740		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
intron-intron	ENST00000476548	ENST00000574593		ChiTaRS3.1			AI671880	IFT27	chr22	37154345	+	SRRM2	chr16	2817492	-
5CDS-intron	ENST00000373366	ENST00000390548		ChiTaRS3.1			BE830000	GJB3	chr1	35250759	-	IGHG1	chr14	106174365	+
5CDS-intron	ENST00000373362	ENST00000390548		ChiTaRS3.1			BE830000	GJB3	chr1	35250759	-	IGHG1	chr14	106174365	+
intron-3CDS	ENST00000331738	ENST00000399332		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-3CDS	ENST00000331738	ENST00000553700		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-intron	ENST00000331738	ENST00000556474		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-3CDS	ENST00000354654	ENST00000399332		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-3CDS	ENST00000354654	ENST00000553700		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-intron	ENST00000354654	ENST00000556474		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-3CDS	ENST00000392442	ENST00000399332		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-3CDS	ENST00000392442	ENST00000553700		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-intron	ENST00000392442	ENST00000556474		ChiTaRS3.1			BF088850	RSRC2	chr12	122995900	-	HECTD1	chr14	31637643	+
intron-intron	ENST00000357056	ENST00000416668		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000357056	ENST00000420922		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000357056	ENST00000420128		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000328459	ENST00000416668		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000328459	ENST00000420922		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000328459	ENST00000420128		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000554654	ENST00000416668		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000554654	ENST00000420922		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-intron	ENST00000554654	ENST00000420128		ChiTaRS3.1			BF366510	TTC7B	chr14	91155905	-	FTCDNL1	chr2	200642995	+
intron-3CDS	ENST00000338854	ENST00000267103		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000338854	ENST00000548632		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-intron	ENST00000338854	ENST00000549488		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000395757	ENST00000267103		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000395757	ENST00000548632		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-intron	ENST00000395757	ENST00000549488		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000355815	ENST00000267103		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000355815	ENST00000548632		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-intron	ENST00000355815	ENST00000549488		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000261646	ENST00000267103		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000261646	ENST00000548632		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-intron	ENST00000261646	ENST00000549488		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000435530	ENST00000267103		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000435530	ENST00000548632		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-intron	ENST00000435530	ENST00000549488		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000583732	ENST00000267103		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000583732	ENST00000548632		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-intron	ENST00000583732	ENST00000549488		ChiTaRS3.1			BG009780	SREBF1	chr17	17722547	+	C12orf10	chr12	53696817	+
intron-3CDS	ENST00000421699	ENST00000396651		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3CDS	ENST00000421699	ENST00000372209		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3UTR	ENST00000421699	ENST00000485390		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3CDS	ENST00000609374	ENST00000396651		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3CDS	ENST00000609374	ENST00000372209		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3UTR	ENST00000609374	ENST00000485390		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3CDS	ENST00000490628	ENST00000396651		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3CDS	ENST00000490628	ENST00000372209		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-3UTR	ENST00000490628	ENST00000485390		ChiTaRS3.1			AK129640	GOLGA2	chr9	131023519	-	RPS8	chr1	45243738	+
intron-intron	ENST00000299957	ENST00000299957		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000299957	ENST00000360824		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000299957	ENST00000345795		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000299957	ENST00000429162		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000360824	ENST00000299957		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000360824	ENST00000360824		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000360824	ENST00000345795		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000360824	ENST00000429162		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000345795	ENST00000299957		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000345795	ENST00000360824		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000345795	ENST00000345795		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000345795	ENST00000429162		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000429162	ENST00000299957		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000429162	ENST00000360824		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000429162	ENST00000345795		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
intron-intron	ENST00000429162	ENST00000429162		ChiTaRS3.1			CV325390	CASC4	chr15	44626182	-	CASC4	chr15	44628838	-
5CDS-intron	ENST00000380993	ENST00000275605		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000380993	ENST00000395471		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000380993	ENST00000459834		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000396577	ENST00000275605		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000396577	ENST00000395471		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000396577	ENST00000459834		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000330289	ENST00000275605		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000330289	ENST00000395471		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000330289	ENST00000459834		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000558405	ENST00000275605		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000558405	ENST00000395471		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
5CDS-intron	ENST00000558405	ENST00000459834		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000561031	ENST00000275605		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000561031	ENST00000395471		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000561031	ENST00000459834		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000559723	ENST00000275605		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000559723	ENST00000395471		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000559723	ENST00000459834		ChiTaRS3.1			BC020860	SLC12A1	chr15	48543967	+	PSPH	chr7	56172158	-
intron-intron	ENST00000302746	ENST00000417478		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000381006		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000226328		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000536664		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000502653		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000512331		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000417478		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000381006		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000226328		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000536664		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000502653		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000512331		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000417478		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000381006		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000226328		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000536664		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000502653		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000512331		ChiTaRS3.1			BF747570	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000353364	ENST00000257177		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000353364	ENST00000371544		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000353364	ENST00000371541		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000353364	ENST00000355809		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000280377	ENST00000257177		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000280377	ENST00000371544		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000280377	ENST00000371541		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000280377	ENST00000355809		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000393654	ENST00000257177		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000393654	ENST00000371544		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000393654	ENST00000371541		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000393654	ENST00000355809		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000550632	ENST00000257177		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000550632	ENST00000371544		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000550632	ENST00000371541		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000550632	ENST00000355809		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000312635	ENST00000257177		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000312635	ENST00000371544		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000312635	ENST00000371541		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000312635	ENST00000355809		ChiTaRS3.1			CV416380	USP15	chr12	62710170	-	ZCCHC11	chr1	52998806	-
intron-intron	ENST00000535741	ENST00000305344		ChiTaRS3.1			BI042740	LRBA	chr4	151185997	-	HTR1E	chr6	87656965	+
intron-intron	ENST00000510413	ENST00000305344		ChiTaRS3.1			BI042740	LRBA	chr4	151185997	-	HTR1E	chr6	87656965	+
intron-intron	ENST00000503716	ENST00000305344		ChiTaRS3.1			BI042740	LRBA	chr4	151185997	-	HTR1E	chr6	87656965	+
intron-intron	ENST00000357115	ENST00000305344		ChiTaRS3.1			BI042740	LRBA	chr4	151185997	-	HTR1E	chr6	87656965	+
intron-intron	ENST00000507224	ENST00000305344		ChiTaRS3.1			BI042740	LRBA	chr4	151185997	-	HTR1E	chr6	87656965	+
3UTR-intron	ENST00000449592	ENST00000369126		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
3UTR-intron	ENST00000449592	ENST00000025469		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
3UTR-intron	ENST00000449592	ENST00000369124		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
3UTR-intron	ENST00000449592	ENST00000479194		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000540377	ENST00000369126		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000540377	ENST00000025469		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000540377	ENST00000369124		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000540377	ENST00000479194		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000538055	ENST00000369126		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000538055	ENST00000025469		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000538055	ENST00000369124		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
intron-intron	ENST00000538055	ENST00000479194		ChiTaRS3.1			BE763340	TMEM120B	chr12	122218554	-	PLEKHO1	chr1	150126478	-
3UTR-5UTR	ENST00000572173	ENST00000251871		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000572173	ENST00000530819		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-intron	ENST00000572173	ENST00000533367		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
intron-5UTR	ENST00000572992	ENST00000251871		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
intron-5UTR	ENST00000572992	ENST00000530819		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
intron-intron	ENST00000572992	ENST00000533367		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000381820	ENST00000251871		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000381820	ENST00000530819		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-intron	ENST00000381820	ENST00000533367		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000312499	ENST00000251871		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000312499	ENST00000530819		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-intron	ENST00000312499	ENST00000533367		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000576027	ENST00000251871		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-5UTR	ENST00000576027	ENST00000530819		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
3UTR-intron	ENST00000576027	ENST00000533367		ChiTaRS3.1			BG822170	RMI2	chr16	11444722	-	MED17	chr11	93517552	+
intron-intron	ENST00000275036	ENST00000367843		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000275036	ENST00000432587		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000275036	ENST00000312263		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000275036	ENST00000367840		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000275036	ENST00000470919		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000344726	ENST00000367843		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000344726	ENST00000432587		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000344726	ENST00000312263		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000344726	ENST00000367840		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
intron-intron	ENST00000344726	ENST00000470919		ChiTaRS3.1			BG750040	HMGN3	chr16	72699234	+	DCAF6	chr1	167988781	+
5CDS-intron	ENST00000246337	ENST00000590829		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000591223		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000414659		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000432735		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000444998		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000455567		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000421927		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-intron	ENST00000246337	ENST00000588753		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
5CDS-3UTR	ENST00000246337	ENST00000420074		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000590829		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000591223		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000414659		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000432735		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000444998		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000455567		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000421927		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-intron	ENST00000494399	ENST00000588753		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
3UTR-3UTR	ENST00000494399	ENST00000420074		ChiTaRS3.1			AW385230	UROD	chr1	45480509	+	MCM3AP-AS1	chr21	47654670	-
intron-intron	ENST00000193029	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000193029	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000193029	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000522874	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522874	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000361847	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000361847	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000524214	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524214	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000561150	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000561150	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000517966	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000517966	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000523231	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000523231	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000524370	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000524370	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000522867	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522867	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000520266	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000520266	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000519058	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000519058	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000193029		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000522874		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000361847		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000524214		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000561150		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000517966		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000523231		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000524370		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-5UTR	ENST00000522534	ENST00000522867		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000520266		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000519058		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
intron-intron	ENST00000522534	ENST00000522534		ChiTaRS3.1			AA452570	MOK	chr14	102698940	-	MOK	chr14	102699273	-
5CDS-3UTR	ENST00000367833	ENST00000219235		ChiTaRS3.1			BE158320	TIPRL	chr1	168154032	-	CCL22	chr16	57397737	+
5CDS-3UTR	ENST00000367830	ENST00000219235		ChiTaRS3.1			BE158320	TIPRL	chr1	168154032	-	CCL22	chr16	57397737	+
intron-3CDS	ENST00000304457	ENST00000522495		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000304457	ENST00000518237		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000376936	ENST00000522495		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000376936	ENST00000518237		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000544779	ENST00000522495		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000544779	ENST00000518237		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000485606	ENST00000522495		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-3CDS	ENST00000485606	ENST00000518237		ChiTaRS3.1			BF871880	EXOSC10	chr1	11134373	+	IDO1	chr8	39785666	-
intron-intron	ENST00000378325	ENST00000378325		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
intron-intron	ENST00000378325	ENST00000354919		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
intron-intron	ENST00000378325	ENST00000313519		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
5CDS-intron	ENST00000354919	ENST00000378325		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
5CDS-intron	ENST00000354919	ENST00000354919		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
5CDS-intron	ENST00000354919	ENST00000313519		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
5CDS-intron	ENST00000313519	ENST00000378325		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
5CDS-intron	ENST00000313519	ENST00000354919		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
5CDS-intron	ENST00000313519	ENST00000313519		ChiTaRS3.1			BG389700	SUV39H2	chr10	14939329	-	SUV39H2	chr10	14939361	+
intron-intron	ENST00000272444	ENST00000272444		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000272444	ENST00000480948		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000272444	ENST00000443070		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000272444	ENST00000377706		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000480948	ENST00000272444		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000480948	ENST00000480948		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000480948	ENST00000443070		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000480948	ENST00000377706		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000443070	ENST00000272444		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000443070	ENST00000480948		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000443070	ENST00000443070		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000443070	ENST00000377706		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000377706	ENST00000272444		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000377706	ENST00000480948		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000377706	ENST00000443070		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000377706	ENST00000377706		ChiTaRS3.1			CB132390	DUSP11	chr2	74007198	+	DUSP11	chr2	74005510	-
intron-intron	ENST00000264645	ENST00000304457		ChiTaRS3.1			AW377350	CASC3	chr17	38323498	-	EXOSC10	chr1	11140178	+
intron-intron	ENST00000264645	ENST00000376936		ChiTaRS3.1			AW377350	CASC3	chr17	38323498	-	EXOSC10	chr1	11140178	+
intron-intron	ENST00000264645	ENST00000544779		ChiTaRS3.1			AW377350	CASC3	chr17	38323498	-	EXOSC10	chr1	11140178	+
intron-intron	ENST00000264645	ENST00000485606		ChiTaRS3.1			AW377350	CASC3	chr17	38323498	-	EXOSC10	chr1	11140178	+
intron-3UTR	ENST00000277657	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000277657	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3UTR	ENST00000362006	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000362006	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3UTR	ENST00000545067	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000545067	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3UTR	ENST00000535327	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000535327	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3UTR	ENST00000539197	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000539197	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3UTR	ENST00000537047	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000537047	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3UTR	ENST00000489718	ENST00000261716		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-intron	ENST00000489718	ENST00000536202		ChiTaRS3.1			AV707610	CCDC7	chr10	32871776	+	TAOK1	chr17	27875315	+
intron-3CDS	ENST00000394023	ENST00000394023		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000394023	ENST00000550164		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000394023	ENST00000347471		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000394023	ENST00000267064		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-intron	ENST00000394023	ENST00000550859		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550164	ENST00000394023		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550164	ENST00000550164		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550164	ENST00000347471		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550164	ENST00000267064		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-intron	ENST00000550164	ENST00000550859		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000347471	ENST00000394023		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000347471	ENST00000550164		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000347471	ENST00000347471		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000347471	ENST00000267064		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-intron	ENST00000347471	ENST00000550859		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000267064	ENST00000394023		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000267064	ENST00000550164		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000267064	ENST00000347471		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000267064	ENST00000267064		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-intron	ENST00000267064	ENST00000550859		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550859	ENST00000394023		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550859	ENST00000550164		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550859	ENST00000347471		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3CDS	ENST00000550859	ENST00000267064		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-intron	ENST00000550859	ENST00000550859		ChiTaRS3.1			BM458720	SMARCC2	chr12	56572273	+	SMARCC2	chr12	56572205	-
intron-3UTR	ENST00000457714	ENST00000376959		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000457714	ENST00000391818		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000457714	ENST00000474951		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-intron	ENST00000457714	ENST00000477616		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000361589	ENST00000376959		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000361589	ENST00000391818		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000361589	ENST00000474951		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-intron	ENST00000361589	ENST00000477616		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000401917	ENST00000376959		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000401917	ENST00000391818		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000401917	ENST00000474951		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-intron	ENST00000401917	ENST00000477616		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000545397	ENST00000376959		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000545397	ENST00000391818		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000545397	ENST00000474951		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-intron	ENST00000545397	ENST00000477616		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000466350	ENST00000376959		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000466350	ENST00000391818		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-3UTR	ENST00000466350	ENST00000474951		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-intron	ENST00000466350	ENST00000477616		ChiTaRS3.1			CB152030	NLGN1	chr3	173775154	+	KCNC3	chr19	50816969	-
intron-5UTR	ENST00000315843	ENST00000315843		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000315843	ENST00000464295		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-intron	ENST00000315843	ENST00000461057		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000464295	ENST00000315843		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000464295	ENST00000464295		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-intron	ENST00000464295	ENST00000461057		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000461057	ENST00000315843		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000461057	ENST00000464295		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
intron-intron	ENST00000461057	ENST00000461057		ChiTaRS3.1			CD638220	GPR156	chr3	119900210	+	GPR156	chr3	119963126	-
5CDS-3UTR	ENST00000223061	ENST00000223061		ChiTaRS3.1			AA226580	PCOLCE	chr7	100205430	+	PCOLCE	chr7	100205770	-
5CDS-intron	ENST00000223061	ENST00000496269		ChiTaRS3.1			AA226580	PCOLCE	chr7	100205430	+	PCOLCE	chr7	100205770	-
intron-3UTR	ENST00000496269	ENST00000223061		ChiTaRS3.1			AA226580	PCOLCE	chr7	100205430	+	PCOLCE	chr7	100205770	-
intron-intron	ENST00000496269	ENST00000496269		ChiTaRS3.1			AA226580	PCOLCE	chr7	100205430	+	PCOLCE	chr7	100205770	-
3UTR-intron	ENST00000369075	ENST00000372084		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
3UTR-intron	ENST00000369075	ENST00000372086		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
3UTR-intron	ENST00000369075	ENST00000341771		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
3UTR-intron	ENST00000369075	ENST00000486676		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
3UTR-intron	ENST00000369075	ENST00000538496		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
3UTR-intron	ENST00000369075	ENST00000451835		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000543134	ENST00000372084		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000543134	ENST00000372086		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000543134	ENST00000341771		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000543134	ENST00000486676		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000543134	ENST00000538496		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000543134	ENST00000451835		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000475542	ENST00000372084		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000475542	ENST00000372086		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000475542	ENST00000341771		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000475542	ENST00000486676		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000475542	ENST00000538496		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000475542	ENST00000451835		ChiTaRS3.1			AW387330	SEC23IP	chr10	121700510	-	TESK2	chr1	45835963	+
intron-intron	ENST00000434571	ENST00000409261		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000434571	ENST00000409213		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000434571	ENST00000405974		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000434571	ENST00000317721		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000434571	ENST00000473859		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000367579	ENST00000409261		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000367579	ENST00000409213		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000367579	ENST00000405974		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000367579	ENST00000317721		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000367579	ENST00000473859		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000282990	ENST00000409261		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000282990	ENST00000409213		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000282990	ENST00000405974		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000282990	ENST00000317721		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000282990	ENST00000473859		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000367580	ENST00000409261		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000367580	ENST00000409213		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000367580	ENST00000405974		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000367580	ENST00000317721		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
3UTR-intron	ENST00000367580	ENST00000473859		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000438435	ENST00000409261		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000438435	ENST00000409213		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000438435	ENST00000405974		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000438435	ENST00000317721		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-intron	ENST00000438435	ENST00000473859		ChiTaRS3.1			AI335100	MR1	chr1	181025410	-	NCKAP5	chr2	133734659	+
intron-3CDS	ENST00000431842	ENST00000431842		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000431842	ENST00000493960		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000431842	ENST00000355628		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-intron	ENST00000431842	ENST00000485156		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000493960	ENST00000431842		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000493960	ENST00000493960		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000493960	ENST00000355628		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-intron	ENST00000493960	ENST00000485156		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000355628	ENST00000431842		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000355628	ENST00000493960		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000355628	ENST00000355628		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-intron	ENST00000355628	ENST00000485156		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000485156	ENST00000431842		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000485156	ENST00000493960		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-3CDS	ENST00000485156	ENST00000355628		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-intron	ENST00000485156	ENST00000485156		ChiTaRS3.1			W26370	FAM208A	chr3	56675773	+	FAM208A	chr3	56675690	-
intron-intron	ENST00000216373	ENST00000216373		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000216373	ENST00000543680		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000216373	ENST00000555794		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000543680	ENST00000216373		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000543680	ENST00000543680		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000543680	ENST00000555794		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000555794	ENST00000216373		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000555794	ENST00000543680		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-intron	ENST00000555794	ENST00000555794		ChiTaRS3.1			AA657600	SOS2	chr14	50630044	-	SOS2	chr14	50630146	+
intron-3CDS	ENST00000273951	ENST00000273951		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000273951	ENST00000504199		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000273951	ENST00000513476		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-5UTR	ENST00000273951	ENST00000503472		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000504199	ENST00000273951		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000504199	ENST00000504199		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000504199	ENST00000513476		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-5UTR	ENST00000504199	ENST00000503472		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000513476	ENST00000273951		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000513476	ENST00000504199		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000513476	ENST00000513476		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-5UTR	ENST00000513476	ENST00000503472		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000503472	ENST00000273951		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000503472	ENST00000504199		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-3CDS	ENST00000503472	ENST00000513476		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
intron-5UTR	ENST00000503472	ENST00000503472		ChiTaRS3.1			AI174810	GC	chr4	72611923	+	GC	chr4	72622628	-
In-frame	ENST00000248444	ENST00000248444		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000248444	ENST00000392114		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
5CDS-intron	ENST00000248444	ENST00000440053		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000392114	ENST00000248444		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000392114	ENST00000392114		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
5CDS-intron	ENST00000392114	ENST00000440053		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000440053	ENST00000248444		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000440053	ENST00000392114		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-intron	ENST00000440053	ENST00000440053		ChiTaRS3.1			BE513010	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911170	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911170	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911170	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911170	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
3UTR-3UTR	ENST00000392627	ENST00000392627		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000392627	ENST00000342648		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000392627	ENST00000481232		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000392627	ENST00000392629		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000392627	ENST00000582873		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000392627		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000342648		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000481232		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000342648	ENST00000392629		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000342648	ENST00000582873		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000392627		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000342648		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000481232		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000481232	ENST00000392629		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000481232	ENST00000582873		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000392627		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000342648		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000481232		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000392629	ENST00000392629		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000392629	ENST00000582873		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000392627		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000342648		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000481232		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000582873	ENST00000392629		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000582873	ENST00000582873		ChiTaRS3.1			D82490	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
In-frame	ENST00000240185	ENST00000377191		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
In-frame	ENST00000240185	ENST00000430571		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
In-frame	ENST00000240185	ENST00000539513		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
In-frame	ENST00000439080	ENST00000377191		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
In-frame	ENST00000439080	ENST00000430571		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
In-frame	ENST00000439080	ENST00000539513		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000315091	ENST00000377191		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000315091	ENST00000430571		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000315091	ENST00000539513		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000480464	ENST00000377191		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000480464	ENST00000430571		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000480464	ENST00000539513		ChiTaRS3.1			BF356570	TARDBP	chr1	11082553	+	XRN2	chr20	21314397	+
intron-3CDS	ENST00000398540	ENST00000354772		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000398540	ENST00000397260		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000398540	ENST00000474057		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000398540	ENST00000206544		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000398540	ENST00000397267		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000542259	ENST00000354772		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000542259	ENST00000397260		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000542259	ENST00000474057		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000542259	ENST00000206544		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000542259	ENST00000397267		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000497757	ENST00000354772		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000497757	ENST00000397260		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000497757	ENST00000474057		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000497757	ENST00000206544		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000497757	ENST00000397267		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000478263	ENST00000354772		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-3CDS	ENST00000478263	ENST00000397260		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000478263	ENST00000474057		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000478263	ENST00000206544		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-5UTR	ENST00000478263	ENST00000397267		ChiTaRS3.1			AI951900	FRMD4B	chr3	69591690	+	SLC22A17	chr14	23816786	+
intron-intron	ENST00000375664	ENST00000374875		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000265371		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374867		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000395995		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374821		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374822		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374823		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374816		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000432372		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374875		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000265371		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374867		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000395995		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374821		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374822		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374823		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374816		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000432372		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374875		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000265371		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374867		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000395995		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374821		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374822		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374823		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374816		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000432372		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374875		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000265371		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374867		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000395995		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374821		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374822		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374823		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374816		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000432372		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374875		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000265371		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374867		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000395995		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374821		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374822		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374823		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374816		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000432372		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374875		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000265371		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374867		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000395995		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374821		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374822		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374823		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374816		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000432372		ChiTaRS3.1			AW373550	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-3UTR	ENST00000393262	ENST00000481110		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-3UTR	ENST00000393262	ENST00000440486		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-3UTR	ENST00000393262	ENST00000412135		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-3UTR	ENST00000393262	ENST00000340107		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-3UTR	ENST00000393262	ENST00000260795		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-3UTR	ENST00000393262	ENST00000352904		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-intron	ENST00000393262	ENST00000474521		ChiTaRS3.1			BF842660	BBS10	chr12	76740240	+	FGFR3	chr4	1810437	+
intron-3CDS	ENST00000375300	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000375300	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000375300	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375300	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375300	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375300	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375300	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375300	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375300	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000375300	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000292055	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000292055	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000292055	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000292055	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000292055	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000292055	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000292055	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000292055	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000292055	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000292055	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000375288	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000375288	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000375288	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375288	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375288	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375288	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375288	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375288	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000375288	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000375288	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000434315	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000434315	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000434315	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000434315	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000434315	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000434315	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000434315	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000434315	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000434315	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000434315	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000542607	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000542607	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000542607	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000542607	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000542607	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000542607	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000542607	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000542607	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000542607	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000542607	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000446921	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000446921	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000446921	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000446921	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000446921	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000446921	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000446921	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000446921	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000446921	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000446921	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000488337	ENST00000409718		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000488337	ENST00000358677		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-3CDS	ENST00000488337	ENST00000409988		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000488337	ENST00000409385		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000488337	ENST00000451764		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000488337	ENST00000360760		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000488337	ENST00000409140		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000488337	ENST00000409755		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-5UTR	ENST00000488337	ENST00000409151		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
intron-intron	ENST00000488337	ENST00000460095		ChiTaRS3.1			BF911180	SIK3	chr11	116923359	-	SPATS2L	chr2	201277059	+
5CDS-3UTR	ENST00000373585	ENST00000469172		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000265866		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000441000		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000354695		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000469172		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000265866		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000441000		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000354695		ChiTaRS3.1			AK093710	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-5UTR	ENST00000378609	ENST00000250498		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378609	ENST00000489532		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378609	ENST00000538631		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378609	ENST00000543337		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-5UTR	ENST00000472614	ENST00000250498		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000472614	ENST00000489532		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000472614	ENST00000538631		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000472614	ENST00000543337		ChiTaRS3.1			BE537940	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378330	ENST00000582674		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000378330	ENST00000328381		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000378330	ENST00000443677		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000378330	ENST00000324689		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000378330	ENST00000535306		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000301030	ENST00000582674		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000301030	ENST00000328381		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000301030	ENST00000443677		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000301030	ENST00000324689		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000301030	ENST00000535306		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000563291	ENST00000582674		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000563291	ENST00000328381		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000563291	ENST00000443677		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000563291	ENST00000324689		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000563291	ENST00000535306		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000567736	ENST00000582674		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000567736	ENST00000328381		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000567736	ENST00000443677		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000567736	ENST00000324689		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000567736	ENST00000535306		ChiTaRS3.1			BF376400	ANKRD11	chr16	89502198	+	RNF135	chr17	29314088	-
intron-intron	ENST00000378797	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378797	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378797	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378781	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378781	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378781	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000429979	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000429979	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000429979	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378784	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378784	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378784	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378787	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378787	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000378787	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000389908	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000389908	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000389908	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000409879	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000409879	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000409879	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000322896	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000322896	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000322896	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000534925	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000534925	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000534925	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000480935	ENST00000255006		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000480935	ENST00000440354		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-intron	ENST00000480935	ENST00000484638		ChiTaRS3.1			BG978660	KIAA0226L	chr13	46964688	+	RIN2	chr20	19874140	-
intron-3CDS	ENST00000359486	ENST00000359486		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000359486	ENST00000335626		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000359486	ENST00000404876		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000359486		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000335626		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000404876		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000359486		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000335626		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000404876		ChiTaRS3.1			AI693830	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3UTR	ENST00000297785	ENST00000297785		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000297785	ENST00000376939		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000297785	ENST00000482210		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-3UTR	ENST00000376939	ENST00000297785		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000376939	ENST00000376939		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000376939	ENST00000482210		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-3UTR	ENST00000482210	ENST00000297785		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000482210	ENST00000376939		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000482210	ENST00000482210		ChiTaRS3.1			AA515000	ALDH1A1	chr9	75515804	+	ALDH1A1	chr9	75515725	-
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			BF057110	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
3UTR-intron	ENST00000254976	ENST00000262367		ChiTaRS3.1			BI033650	SNAP25	chr20	10287792	-	CREBBP	chr16	3784271	-
3UTR-intron	ENST00000254976	ENST00000382070		ChiTaRS3.1			BI033650	SNAP25	chr20	10287792	-	CREBBP	chr16	3784271	-
3UTR-intron	ENST00000304886	ENST00000262367		ChiTaRS3.1			BI033650	SNAP25	chr20	10287792	-	CREBBP	chr16	3784271	-
3UTR-intron	ENST00000304886	ENST00000382070		ChiTaRS3.1			BI033650	SNAP25	chr20	10287792	-	CREBBP	chr16	3784271	-
3UTR-intron	ENST00000495883	ENST00000262367		ChiTaRS3.1			BI033650	SNAP25	chr20	10287792	-	CREBBP	chr16	3784271	-
3UTR-intron	ENST00000495883	ENST00000382070		ChiTaRS3.1			BI033650	SNAP25	chr20	10287792	-	CREBBP	chr16	3784271	-
Frame-shit	ENST00000588030	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588030	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588030	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000588030	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589660	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589660	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000589660	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588090	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588090	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000588090	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000591935	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000591935	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000591935	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589710	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589710	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000589710	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000588230	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000588230	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000588230	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000413636	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000413636	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-intron	ENST00000413636	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586472	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586472	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000586472	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589686	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589686	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000589686	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000444172	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000444172	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000444172	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587323	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587323	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000587323	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000320936	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000320936	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000320936	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000587896	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000587896	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000587896	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000589235	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000589235	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000589235	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000585630	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000585630	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000585630	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000586773	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-5UTR	ENST00000586773	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
5CDS-intron	ENST00000586773	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000588030		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000589660		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000588090		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000591935		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000589710		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000588230		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000413636		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000586472		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-3CDS	ENST00000590188	ENST00000589686		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000444172		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000587323		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000320936		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000587896		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000589235		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000585630		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-5UTR	ENST00000590188	ENST00000586773		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
intron-intron	ENST00000590188	ENST00000590188		ChiTaRS3.1			AW592560	CIRBP	chr19	1271377	+	CIRBP	chr19	1270937	+
Frame-shit	ENST00000349048	ENST00000349048		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
Frame-shit	ENST00000349048	ENST00000403390		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
5CDS-intron	ENST00000349048	ENST00000496824		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
Frame-shit	ENST00000403390	ENST00000349048		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
Frame-shit	ENST00000403390	ENST00000403390		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
5CDS-intron	ENST00000403390	ENST00000496824		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
3UTR-3CDS	ENST00000496824	ENST00000349048		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
3UTR-3CDS	ENST00000496824	ENST00000403390		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
3UTR-intron	ENST00000496824	ENST00000496824		ChiTaRS3.1			BI024780	PFKL	chr21	45732037	-	PFKL	chr21	45746739	-
intron-3UTR	ENST00000281928	ENST00000296755		ChiTaRS3.1			BF934070	MED13L	chr12	116595660	+	MAP1B	chr5	71504322	-
intron-intron	ENST00000281928	ENST00000504183		ChiTaRS3.1			BF934070	MED13L	chr12	116595660	+	MAP1B	chr5	71504322	-
intron-3UTR	ENST00000551197	ENST00000296755		ChiTaRS3.1			BF934070	MED13L	chr12	116595660	+	MAP1B	chr5	71504322	-
intron-intron	ENST00000551197	ENST00000504183		ChiTaRS3.1			BF934070	MED13L	chr12	116595660	+	MAP1B	chr5	71504322	-
intron-3UTR	ENST00000339208	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000339208	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000339208	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000339208	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000339208	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000339208	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000339208	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000339208	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000346661	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000346661	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000346661	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000346661	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000346661	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000346661	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000346661	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000346661	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000345615	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000345615	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000345615	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000345615	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000345615	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000345615	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000345615	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000345615	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000502449	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000502449	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000502449	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000502449	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000502449	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000502449	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000502449	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000502449	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000591288	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000591288	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000591288	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000591288	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000591288	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000591288	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000591288	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000591288	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000394378	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000394378	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000394378	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000394378	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000394378	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000394378	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000394378	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000394378	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000585472	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000585472	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000585472	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000585472	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000585472	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000585472	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000585472	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000585472	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000588194	ENST00000339208		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-3UTR	ENST00000588194	ENST00000346661		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000588194	ENST00000345615		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000588194	ENST00000502449		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000588194	ENST00000591288		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000588194	ENST00000394378		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000588194	ENST00000585472		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
intron-intron	ENST00000588194	ENST00000588194		ChiTaRS3.1			BU685120	SYNRG	chr17	35877061	+	SYNRG	chr17	35875858	+
In-frame	ENST00000531120	ENST00000531120		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
In-frame	ENST00000531120	ENST00000524896		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000531120	ENST00000532054		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
In-frame	ENST00000524896	ENST00000531120		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
In-frame	ENST00000524896	ENST00000524896		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
5CDS-intron	ENST00000524896	ENST00000532054		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
intron-3CDS	ENST00000532054	ENST00000531120		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
intron-3CDS	ENST00000532054	ENST00000524896		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
intron-intron	ENST00000532054	ENST00000532054		ChiTaRS3.1			BQ428530	EIF3M	chr11	32611166	-	EIF3M	chr11	32616460	+
intron-3CDS	ENST00000537956	ENST00000301740		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-intron	ENST00000537956	ENST00000574593		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-3CDS	ENST00000328654	ENST00000301740		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-intron	ENST00000328654	ENST00000574593		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-3CDS	ENST00000534834	ENST00000301740		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-intron	ENST00000534834	ENST00000574593		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-3CDS	ENST00000391574	ENST00000301740		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
intron-intron	ENST00000391574	ENST00000574593		ChiTaRS3.1			BG002260	ZNF26	chr?	101954	-	SRRM2	chr16	2812667	-
Frame-shit	ENST00000358607	ENST00000339562		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000358607	ENST00000426264		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000358607	ENST00000409572		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000358607	ENST00000539077		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000358607	ENST00000409108		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000358607	ENST00000429376		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000450195	ENST00000339562		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000450195	ENST00000426264		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000450195	ENST00000409572		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000450195	ENST00000539077		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000450195	ENST00000409108		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
Frame-shit	ENST00000450195	ENST00000429376		ChiTaRS3.1			BF059310	C19orf60	chr19	18700448	-	NR4A2	chr2	157186240	+
3UTR-intron	ENST00000301332	ENST00000380842		ChiTaRS3.1			AI949011	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-intron	ENST00000301332	ENST00000460403		ChiTaRS3.1			AI949011	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-intron	ENST00000301331	ENST00000380842		ChiTaRS3.1			AI949011	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-intron	ENST00000301331	ENST00000460403		ChiTaRS3.1			AI949011	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
intron-intron	ENST00000531423	ENST00000380842		ChiTaRS3.1			AI949011	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
intron-intron	ENST00000531423	ENST00000460403		ChiTaRS3.1			AI949011	KIFC2	chr8	145699284	+	POMP	chr13	29237015	-
3UTR-3UTR	ENST00000343674	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000343674	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000343674	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000343674	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000532868	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000532868	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000532868	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000532868	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000528615	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000528615	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000528615	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000528615	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000395574	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000395574	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000395574	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000395574	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000543978	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000543978	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000543978	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000543978	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000527911	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000527911	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000527911	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000527911	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000456247	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000456247	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000456247	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000456247	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000421244	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000421244	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000421244	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000421244	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000318201	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000318201	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000318201	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000318201	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000454345	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000454345	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000454345	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000454345	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000525434	ENST00000285208		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000525434	ENST00000543906		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000525434	ENST00000469959		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000525434	ENST00000486858		ChiTaRS3.1			AI638821	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000356406	ENST00000367342		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000356406	ENST00000413687		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000356406	ENST00000465162		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000413009	ENST00000367342		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000413009	ENST00000413687		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000413009	ENST00000465162		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000503233	ENST00000367342		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000503233	ENST00000413687		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000503233	ENST00000465162		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000515797	ENST00000367342		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000515797	ENST00000413687		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000515797	ENST00000465162		ChiTaRS3.1			AA527241	ACOX3	chr4	8369498	+	C1orf106	chr1	200875352	-
intron-intron	ENST00000341056	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000341056	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000341056	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000341056	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396045	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396045	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396045	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396045	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000310758	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000310758	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000310758	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000310758	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396040	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396040	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396040	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000396040	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000442504	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000442504	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000442504	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000442504	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000448602	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000448602	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000448602	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000448602	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000479447	ENST00000251810		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000479447	ENST00000395912		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000479447	ENST00000519317		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
intron-intron	ENST00000479447	ENST00000519962		ChiTaRS3.1			BG999871	ELMO1	chr7	36895007	-	RRM2B	chr8	103222575	-
Frame-shit	ENST00000267101	ENST00000267101		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000267101	ENST00000450146		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000267101	ENST00000415288		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000267101	ENST00000553131		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000267101	ENST00000411731		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000267101	ENST00000549832		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
Frame-shit	ENST00000450146	ENST00000267101		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000450146	ENST00000450146		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000450146	ENST00000415288		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000450146	ENST00000553131		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000450146	ENST00000411731		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000450146	ENST00000549832		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
Frame-shit	ENST00000415288	ENST00000267101		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000415288	ENST00000450146		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000415288	ENST00000415288		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000415288	ENST00000553131		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000415288	ENST00000411731		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000415288	ENST00000549832		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
Frame-shit	ENST00000553131	ENST00000267101		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000553131	ENST00000450146		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000553131	ENST00000415288		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000553131	ENST00000553131		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000553131	ENST00000411731		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000553131	ENST00000549832		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
intron-3CDS	ENST00000411731	ENST00000267101		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
intron-intron	ENST00000411731	ENST00000450146		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
intron-intron	ENST00000411731	ENST00000415288		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
intron-intron	ENST00000411731	ENST00000553131		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
intron-intron	ENST00000411731	ENST00000411731		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
intron-intron	ENST00000411731	ENST00000549832		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
Frame-shit	ENST00000549832	ENST00000267101		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000549832	ENST00000450146		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000549832	ENST00000415288		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000549832	ENST00000553131		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000549832	ENST00000411731		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-intron	ENST00000549832	ENST00000549832		ChiTaRS3.1			BF369721	ERBB3	chr12	56494997	+	ERBB3	chr12	56478856	+
5CDS-3UTR	ENST00000360289	ENST00000360289		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000360289	ENST00000448642		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000360289	ENST00000404387		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000360289	ENST00000298649		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000360289	ENST00000359426		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000360289	ENST00000494253		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000448642	ENST00000360289		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000448642	ENST00000448642		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000448642	ENST00000404387		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000448642	ENST00000298649		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000448642	ENST00000359426		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000448642	ENST00000494253		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000404387	ENST00000360289		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000404387	ENST00000448642		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000404387	ENST00000404387		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000404387	ENST00000298649		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000404387	ENST00000359426		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000404387	ENST00000494253		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000298649	ENST00000360289		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000298649	ENST00000448642		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000298649	ENST00000404387		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000298649	ENST00000298649		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000298649	ENST00000359426		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000298649	ENST00000494253		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000359426	ENST00000360289		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000359426	ENST00000448642		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000359426	ENST00000404387		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000359426	ENST00000298649		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-3UTR	ENST00000359426	ENST00000359426		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
5CDS-intron	ENST00000359426	ENST00000494253		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-3UTR	ENST00000494253	ENST00000360289		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-3UTR	ENST00000494253	ENST00000448642		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-intron	ENST00000494253	ENST00000404387		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-3UTR	ENST00000494253	ENST00000298649		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-3UTR	ENST00000494253	ENST00000359426		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-intron	ENST00000494253	ENST00000494253		ChiTaRS3.1			AW903811	HK1	chr10	71151936	-	HK1	chr10	71161134	+
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			AW968271	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000394464	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000343796	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000415690	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000424646	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000504572	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000394466	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000231509	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000416954	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000503201	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000415690		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000504336	ENST00000424646		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			CB219071	NR3C1	chr5	142660789	+	NR3C1	chr5	142660302	-
intron-3UTR	ENST00000366835	ENST00000261267		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000366835	ENST00000549690		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000366835	ENST00000548839		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-3UTR	ENST00000474478	ENST00000261267		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000474478	ENST00000549690		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000474478	ENST00000548839		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-3UTR	ENST00000537914	ENST00000261267		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000537914	ENST00000549690		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000537914	ENST00000548839		ChiTaRS3.1			AX748341	TMEM63A	chr1	226039374	-	LYZ	chr12	69747527	+
intron-intron	ENST00000380122	ENST00000259727		ChiTaRS3.1			CV340881	TXLNG	chrX	16820486	+	GMPR	chr6	16294671	+
intron-intron	ENST00000380122	ENST00000544145		ChiTaRS3.1			CV340881	TXLNG	chrX	16820486	+	GMPR	chr6	16294671	+
intron-intron	ENST00000398155	ENST00000259727		ChiTaRS3.1			CV340881	TXLNG	chrX	16820486	+	GMPR	chr6	16294671	+
intron-intron	ENST00000398155	ENST00000544145		ChiTaRS3.1			CV340881	TXLNG	chrX	16820486	+	GMPR	chr6	16294671	+
intron-intron	ENST00000485153	ENST00000259727		ChiTaRS3.1			CV340881	TXLNG	chrX	16820486	+	GMPR	chr6	16294671	+
intron-intron	ENST00000485153	ENST00000544145		ChiTaRS3.1			CV340881	TXLNG	chrX	16820486	+	GMPR	chr6	16294671	+
Frame-shit	ENST00000251496	ENST00000251496		ChiTaRS3.1			AW794691	NCAPG	chr4	17844002	+	NCAPG	chr4	17841698	+
intron-3CDS	ENST00000520701	ENST00000259698		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000520701	ENST00000538035		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000520701	ENST00000510784		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000520701	ENST00000378023		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000520701	ENST00000540914		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000520701	ENST00000473070		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000243389	ENST00000259698		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000243389	ENST00000538035		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000243389	ENST00000510784		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000243389	ENST00000378023		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000243389	ENST00000540914		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000243389	ENST00000473070		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000429484	ENST00000259698		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000429484	ENST00000538035		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000429484	ENST00000510784		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000429484	ENST00000378023		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000429484	ENST00000540914		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000429484	ENST00000473070		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000521925	ENST00000259698		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000521925	ENST00000538035		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521925	ENST00000510784		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521925	ENST00000378023		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521925	ENST00000540914		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521925	ENST00000473070		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000521351	ENST00000259698		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-3CDS	ENST00000521351	ENST00000538035		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521351	ENST00000510784		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521351	ENST00000378023		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521351	ENST00000540914		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
intron-intron	ENST00000521351	ENST00000473070		ChiTaRS3.1			DA171741	SLC36A1	chr5	150830602	+	FAM65B	chr6	24836101	-
In-frame	ENST00000249373	ENST00000249373		ChiTaRS3.1			BE250601	SMO	chr7	128846407	+	SMO	chr7	128848662	-
intron-intron	ENST00000347519	ENST00000261789		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000347519	ENST00000528669		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000347519	ENST00000556387		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000347519	ENST00000530611		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000347519	ENST00000524835		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000347519	ENST00000396854		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000530996	ENST00000261789		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000530996	ENST00000528669		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000530996	ENST00000556387		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000530996	ENST00000530611		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000530996	ENST00000524835		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000530996	ENST00000396854		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000542700	ENST00000261789		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000542700	ENST00000528669		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000542700	ENST00000556387		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000542700	ENST00000530611		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000542700	ENST00000524835		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000542700	ENST00000396854		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000609024	ENST00000261789		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000609024	ENST00000528669		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000609024	ENST00000556387		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000609024	ENST00000530611		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000609024	ENST00000524835		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-intron	ENST00000609024	ENST00000396854		ChiTaRS3.1			BF312811	CHMP4A	chr14	24684997	+	TM9SF1	chr14	24684871	-
intron-3CDS	ENST00000263238	ENST00000295897		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-3CDS	ENST00000263238	ENST00000415165		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000263238	ENST00000503124		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000263238	ENST00000509063		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000263238	ENST00000401494		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-intron	ENST00000263238	ENST00000505649		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-3CDS	ENST00000536059	ENST00000295897		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-3CDS	ENST00000536059	ENST00000415165		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000536059	ENST00000503124		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000536059	ENST00000509063		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000536059	ENST00000401494		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-intron	ENST00000536059	ENST00000505649		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-3CDS	ENST00000535589	ENST00000295897		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-3CDS	ENST00000535589	ENST00000415165		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000535589	ENST00000503124		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000535589	ENST00000509063		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-5UTR	ENST00000535589	ENST00000401494		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-intron	ENST00000535589	ENST00000505649		ChiTaRS3.1			AI174891	ACTR3	chr2	114677181	-	ALB	chr4	74270078	+
intron-intron	ENST00000254900	ENST00000550418		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000553186		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000547372		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000422070		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000535565		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000547427		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000552089		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000547338		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000436368		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000311745		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000355637		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000254900	ENST00000340209		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000550418		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000553186		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000547372		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000422070		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000535565		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000547427		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000552089		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000547338		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000436368		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000311745		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000355637		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000230901	ENST00000340209		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000550418		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000553186		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000547372		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000422070		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000535565		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000547427		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000552089		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000547338		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000436368		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000311745		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000355637		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000402931	ENST00000340209		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000550418		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000553186		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000547372		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000422070		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000535565		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000547427		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000552089		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000547338		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000436368		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000311745		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000355637		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000411594	ENST00000340209		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000550418		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000553186		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000547372		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000422070		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000535565		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000547427		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000552089		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000547338		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000436368		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000311745		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000355637		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000455658	ENST00000340209		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000550418		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000553186		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000547372		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000422070		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000535565		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000547427		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000552089		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000547338		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000436368		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000311745		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000355637		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000515014	ENST00000340209		ChiTaRS3.1			BQ323351	BRD8	chr5	137506762	+	RBFOX1	chr16	6476474	-
intron-intron	ENST00000398896	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398896	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398896	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398896	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398898	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398898	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398898	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398898	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000417901	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000417901	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000417901	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000417901	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000453664	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000453664	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000453664	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000453664	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398892	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398892	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398892	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398892	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398888	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398888	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398888	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000398888	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000434032	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000434032	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000434032	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000434032	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000488993	ENST00000257100		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000488993	ENST00000373648		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000488993	ENST00000360482		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
intron-intron	ENST00000488993	ENST00000533231		ChiTaRS3.1			BQ332901	USP19	chr3	49151476	+	SPOCD1	chr1	32259301	-
Frame-shit	ENST00000309909	ENST00000397944		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-5UTR	ENST00000309909	ENST00000367493		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000309909	ENST00000523560		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000309909	ENST00000367488		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
Frame-shit	ENST00000455858	ENST00000397944		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-5UTR	ENST00000455858	ENST00000367493		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000455858	ENST00000523560		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
5CDS-intron	ENST00000455858	ENST00000367488		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-3CDS	ENST00000551773	ENST00000397944		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-5UTR	ENST00000551773	ENST00000367493		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-intron	ENST00000551773	ENST00000523560		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-intron	ENST00000551773	ENST00000367488		ChiTaRS3.1			AK021951	FBXW8	chr12	117365932	+	ADGB	chr6	147038018	+
intron-5UTR	ENST00000492619	ENST00000492619		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000492619	ENST00000292291		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000492619	ENST00000356983		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000492619	ENST00000335852		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000492619	ENST00000368270		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000492619	ENST00000540423		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000292291	ENST00000492619		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000292291	ENST00000292291		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000292291	ENST00000356983		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000292291	ENST00000335852		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000292291	ENST00000368270		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000292291	ENST00000540423		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000356983	ENST00000492619		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000356983	ENST00000292291		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000356983	ENST00000356983		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000356983	ENST00000335852		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000356983	ENST00000368270		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000356983	ENST00000540423		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000335852	ENST00000492619		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000335852	ENST00000292291		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000335852	ENST00000356983		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000335852	ENST00000335852		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000335852	ENST00000368270		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000335852	ENST00000540423		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000368270	ENST00000492619		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000368270	ENST00000292291		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000368270	ENST00000356983		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000368270	ENST00000335852		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000368270	ENST00000368270		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000368270	ENST00000540423		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000540423	ENST00000492619		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000540423	ENST00000292291		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000540423	ENST00000356983		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000540423	ENST00000335852		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000540423	ENST00000368270		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
intron-5UTR	ENST00000540423	ENST00000540423		ChiTaRS3.1			BF933691	PAQR6	chr1	156215160	-	PAQR6	chr1	156214947	+
3UTR-3UTR	ENST00000338844	ENST00000336967		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391771		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391770		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391769		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391768		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000336967		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391771		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391770		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391769		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391768		ChiTaRS3.1			BF848001	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
intron-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			DQ177304	RUNX1	chr21	36228050	-	RUNX1T1	chr8	93080836	-
3UTR-3UTR	ENST00000558401	ENST00000558401		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-intron	ENST00000558401	ENST00000559916		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-intron	ENST00000558401	ENST00000544417		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-3UTR	ENST00000558401	ENST00000559220		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-3UTR	ENST00000559916	ENST00000558401		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-intron	ENST00000559916	ENST00000559916		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-intron	ENST00000559916	ENST00000544417		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-3UTR	ENST00000559916	ENST00000559220		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-3UTR	ENST00000544417	ENST00000558401		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-intron	ENST00000544417	ENST00000559916		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-intron	ENST00000544417	ENST00000544417		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-3UTR	ENST00000544417	ENST00000559220		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-3UTR	ENST00000559220	ENST00000558401		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-intron	ENST00000559220	ENST00000559916		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-intron	ENST00000559220	ENST00000544417		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
3UTR-3UTR	ENST00000559220	ENST00000559220		ChiTaRS3.1			BF590711	B2M	chr15	45010283	-	B2M	chr15	45009930	+
intron-intron	ENST00000391743	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000348231	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000391742	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000434277	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000313038	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000474878	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000463489	ENST00000362582		ChiTaRS3.1			AW294311	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
In-frame	ENST00000014914	ENST00000379802		ChiTaRS3.1			BE706031	GPRC5A	chr12	13061511	+	DSP	chr6	7585640	-
Frame-shit	ENST00000014914	ENST00000418664		ChiTaRS3.1			BE706031	GPRC5A	chr12	13061511	+	DSP	chr6	7585640	-
intron-3CDS	ENST00000542056	ENST00000379802		ChiTaRS3.1			BE706031	GPRC5A	chr12	13061511	+	DSP	chr6	7585640	-
intron-3CDS	ENST00000542056	ENST00000418664		ChiTaRS3.1			BE706031	GPRC5A	chr12	13061511	+	DSP	chr6	7585640	-
intron-3UTR	ENST00000357749	ENST00000357749		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-5UTR	ENST00000357749	ENST00000467744		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000357749	ENST00000537751		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000357749	ENST00000358786		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-3UTR	ENST00000467744	ENST00000357749		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-5UTR	ENST00000467744	ENST00000467744		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000467744	ENST00000537751		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000467744	ENST00000358786		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-3UTR	ENST00000537751	ENST00000357749		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-5UTR	ENST00000537751	ENST00000467744		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000537751	ENST00000537751		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000537751	ENST00000358786		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-3UTR	ENST00000358786	ENST00000357749		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-5UTR	ENST00000358786	ENST00000467744		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000358786	ENST00000537751		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000358786	ENST00000358786		ChiTaRS3.1			BE814491	CHM	chrX	85116796	+	CHM	chrX	85116744	-
intron-intron	ENST00000308664	ENST00000308664		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000308664	ENST00000395494		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000308664	ENST00000539276		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000308664	ENST00000550248		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000308664	ENST00000552636		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000395494	ENST00000308664		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000395494	ENST00000395494		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000395494	ENST00000539276		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000395494	ENST00000550248		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000395494	ENST00000552636		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000539276	ENST00000308664		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000539276	ENST00000395494		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000539276	ENST00000539276		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000539276	ENST00000550248		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000539276	ENST00000552636		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000550248	ENST00000308664		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000550248	ENST00000395494		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000550248	ENST00000539276		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000550248	ENST00000550248		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000550248	ENST00000552636		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000552636	ENST00000308664		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000552636	ENST00000395494		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000552636	ENST00000539276		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000552636	ENST00000550248		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-intron	ENST00000552636	ENST00000552636		ChiTaRS3.1			CV315141	ATP2A2	chr12	110738529	-	ATP2A2	chr12	110739189	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			CD580061	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			CD580061	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			CD580061	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			CD580061	EEF2	chr19	3981383	-	EEF2	chr19	3982967	-
intron-intron	ENST00000396432	ENST00000398333		ChiTaRS3.1			BG656161	ARHGAP21	chr10	24919723	-	C15orf38-AP3S2	chr15	90440463	-
intron-intron	ENST00000396432	ENST00000560224		ChiTaRS3.1			BG656161	ARHGAP21	chr10	24919723	-	C15orf38-AP3S2	chr15	90440463	-
intron-intron	ENST00000320481	ENST00000398333		ChiTaRS3.1			BG656161	ARHGAP21	chr10	24919723	-	C15orf38-AP3S2	chr15	90440463	-
intron-intron	ENST00000320481	ENST00000560224		ChiTaRS3.1			BG656161	ARHGAP21	chr10	24919723	-	C15orf38-AP3S2	chr15	90440463	-
intron-intron	ENST00000493154	ENST00000398333		ChiTaRS3.1			BG656161	ARHGAP21	chr10	24919723	-	C15orf38-AP3S2	chr15	90440463	-
intron-intron	ENST00000493154	ENST00000560224		ChiTaRS3.1			BG656161	ARHGAP21	chr10	24919723	-	C15orf38-AP3S2	chr15	90440463	-
intron-intron	ENST00000367194	ENST00000357710		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000324501		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000344094		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000261970		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000394164		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000557511		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000406768		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000394157		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000553447		ChiTaRS3.1			BI053531	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000249923	ENST00000249923		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000249923	ENST00000439561		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000249923	ENST00000526191		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000439561	ENST00000249923		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000439561	ENST00000439561		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000439561	ENST00000526191		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000526191	ENST00000249923		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000526191	ENST00000439561		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000526191	ENST00000526191		ChiTaRS3.1			BX484531	COPB1	chr11	14482721	-	COPB1	chr11	14498654	-
intron-intron	ENST00000565644	ENST00000377967		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000565644	ENST00000382899		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000565644	ENST00000536777		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000565644	ENST00000543216		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000565644	ENST00000479423		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000261622	ENST00000377967		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000261622	ENST00000382899		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000261622	ENST00000536777		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000261622	ENST00000543216		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-intron	ENST00000261622	ENST00000479423		ChiTaRS3.1			BF369111	SLC7A5	chr16	87882987	-	KDM6A	chrX	44874116	-
intron-3UTR	ENST00000454859	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454859	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454859	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454859	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454859	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454859	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454859	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454859	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454859	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454859	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000474289	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000474289	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000474289	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000474289	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000474289	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000474289	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000474289	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000474289	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000474289	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000474289	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000528402	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000528402	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000528402	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000528402	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000528402	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000528402	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000528402	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000528402	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000528402	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000528402	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454591	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454591	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454591	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454591	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454591	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454591	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454591	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454591	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000454591	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000454591	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368291	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368291	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368291	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368291	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368291	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368291	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368291	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368291	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368291	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368291	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000309620	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000309620	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000309620	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000309620	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000309620	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000309620	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000309620	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000309620	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000309620	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000309620	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000430841	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000430841	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000430841	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000430841	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000430841	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000430841	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000430841	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000430841	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000430841	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000430841	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368289	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368289	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368289	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368289	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368289	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368289	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368289	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368289	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000368289	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000368289	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000531967	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000531967	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000531967	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000531967	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000531967	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000531967	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000531967	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000531967	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000531967	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000531967	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000488087	ENST00000454859		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000488087	ENST00000474289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000488087	ENST00000528402		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000488087	ENST00000454591		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000488087	ENST00000368291		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000488087	ENST00000309620		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000488087	ENST00000430841		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000488087	ENST00000368289		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-3UTR	ENST00000488087	ENST00000531967		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-intron	ENST00000488087	ENST00000488087		ChiTaRS3.1			BE768171	ECHDC1	chr6	127610430	+	ECHDC1	chr6	127610646	-
intron-5UTR	ENST00000349051	ENST00000349051		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000349051	ENST00000488223		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000349051	ENST00000357321		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000349051	ENST00000537969		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000349051	ENST00000544879		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000349051	ENST00000372997		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000488223	ENST00000349051		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000488223	ENST00000488223		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000488223	ENST00000357321		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000488223	ENST00000537969		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000488223	ENST00000544879		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000488223	ENST00000372997		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000357321	ENST00000349051		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000357321	ENST00000488223		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000357321	ENST00000357321		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000357321	ENST00000537969		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000357321	ENST00000544879		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000357321	ENST00000372997		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000537969	ENST00000349051		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000537969	ENST00000488223		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000537969	ENST00000357321		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000537969	ENST00000537969		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000537969	ENST00000544879		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000537969	ENST00000372997		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000544879	ENST00000349051		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000544879	ENST00000488223		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000544879	ENST00000357321		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000544879	ENST00000537969		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000544879	ENST00000544879		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000544879	ENST00000372997		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000372997	ENST00000349051		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000372997	ENST00000488223		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-5UTR	ENST00000372997	ENST00000357321		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000372997	ENST00000537969		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000372997	ENST00000544879		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-intron	ENST00000372997	ENST00000372997		ChiTaRS3.1			AW294951	NUDT13	chr10	74870787	+	NUDT13	chr10	74870264	+
intron-3UTR	ENST00000368533	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368533	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368533	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000368533	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368533	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000368533	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000469717	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000469717	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000330188	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000330188	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000341485	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000341485	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000341372	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000341372	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000328159	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000328159	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000271850	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000271850	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000302206	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000302206	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000368531	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000368531	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000323144	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000323144	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000280551		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000379735		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000429811		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000368530	ENST00000505134		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000511481		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000368530	ENST00000419654		ChiTaRS3.1			BE695881	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000411486	ENST00000411486		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000411486	ENST00000441687		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000411486	ENST00000432087		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000411486	ENST00000434039		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000441687	ENST00000411486		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000441687	ENST00000441687		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000441687	ENST00000432087		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000441687	ENST00000434039		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000432087	ENST00000411486		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000432087	ENST00000441687		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000432087	ENST00000432087		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000432087	ENST00000434039		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000434039	ENST00000411486		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000434039	ENST00000441687		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000434039	ENST00000432087		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
intron-intron	ENST00000434039	ENST00000434039		ChiTaRS3.1			DW408391	HJURP	chr2	234760313	-	HJURP	chr2	234761182	-
In-frame	ENST00000328771	ENST00000328771		ChiTaRS3.1			BM931341	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
5CDS-3UTR	ENST00000328771	ENST00000471451		ChiTaRS3.1			BM931341	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
intron-3CDS	ENST00000471451	ENST00000328771		ChiTaRS3.1			BM931341	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
intron-3UTR	ENST00000471451	ENST00000471451		ChiTaRS3.1			BM931341	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911241	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911241	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911241	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911241	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
3UTR-intron	ENST00000406386	ENST00000318445		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
3UTR-intron	ENST00000406386	ENST00000424469		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
3UTR-intron	ENST00000406386	ENST00000555549		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
intron-intron	ENST00000407319	ENST00000318445		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
intron-intron	ENST00000407319	ENST00000424469		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
intron-intron	ENST00000407319	ENST00000555549		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
3UTR-intron	ENST00000403663	ENST00000318445		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
3UTR-intron	ENST00000403663	ENST00000424469		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
3UTR-intron	ENST00000403663	ENST00000555549		ChiTaRS3.1			AA927441	TRIOBP	chr22	38169942	-	SLCO3A1	chr15	92572137	-
In-frame	ENST00000338970	ENST00000333646		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
In-frame	ENST00000338970	ENST00000374102		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
In-frame	ENST00000338970	ENST00000374080		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
5CDS-intron	ENST00000338970	ENST00000462984		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
Frame-shit	ENST00000396203	ENST00000333646		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
Frame-shit	ENST00000396203	ENST00000374102		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
Frame-shit	ENST00000396203	ENST00000374080		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
5CDS-intron	ENST00000396203	ENST00000462984		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
3UTR-3CDS	ENST00000416518	ENST00000333646		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
3UTR-3CDS	ENST00000416518	ENST00000374102		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
3UTR-3CDS	ENST00000416518	ENST00000374080		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
3UTR-intron	ENST00000416518	ENST00000462984		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
intron-3CDS	ENST00000461368	ENST00000333646		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
intron-3CDS	ENST00000461368	ENST00000374102		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
intron-3CDS	ENST00000461368	ENST00000374080		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
intron-intron	ENST00000461368	ENST00000462984		ChiTaRS3.1			BG519661	RPL14	chr3	40503641	+	MED12	chrX	70361761	+
intron-intron	ENST00000351960	ENST00000378565		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000351960	ENST00000378549		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000358965	ENST00000378565		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000358965	ENST00000378549		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000393695	ENST00000378565		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000393695	ENST00000378549		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000543450	ENST00000378565		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-intron	ENST00000543450	ENST00000378549		ChiTaRS3.1			DB005631	NUMA1	chr11	71719789	-	ITM2B	chr13	48807284	+
intron-5UTR	ENST00000370508	ENST00000295834		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-intron	ENST00000370508	ENST00000393750		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-intron	ENST00000370508	ENST00000495375		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-5UTR	ENST00000543866	ENST00000295834		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-intron	ENST00000543866	ENST00000393750		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-intron	ENST00000543866	ENST00000495375		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-5UTR	ENST00000471741	ENST00000295834		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-intron	ENST00000471741	ENST00000393750		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
intron-intron	ENST00000471741	ENST00000495375		ChiTaRS3.1			AI114691	GOT1	chr10	101190377	+	FABP1	chr2	88427579	-
Frame-shit	ENST00000371191	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371191	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371191	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000407417	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000407417	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000407417	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3CDS	ENST00000479364	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3CDS	ENST00000479364	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
3UTR-3UTR	ENST00000479364	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371189	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371189	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371189	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000403491	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000403491	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000403491	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371187	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371187	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371187	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000485903	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000485903	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000485903	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371185	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371185	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371185	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371184	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000371184	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000371184	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000357977	ENST00000371191		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
Frame-shit	ENST00000357977	ENST00000407417		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000479364		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000371189		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000403491		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000371187		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000485903		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000371185		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000371184		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
5CDS-3UTR	ENST00000357977	ENST00000357977		ChiTaRS3.1			BE766501	NFIA	chr1	61872334	-	NFIA	chr1	61872298	+
intron-intron	ENST00000519065	ENST00000521689		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519065	ENST00000254898		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519065	ENST00000524308		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519065	ENST00000522025		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519065	ENST00000520016		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519065	ENST00000518238		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000398283	ENST00000521689		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000398283	ENST00000254898		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000398283	ENST00000524308		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000398283	ENST00000522025		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000398283	ENST00000520016		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000398283	ENST00000518238		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519108	ENST00000521689		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519108	ENST00000254898		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519108	ENST00000524308		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519108	ENST00000522025		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519108	ENST00000520016		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000519108	ENST00000518238		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000368632	ENST00000521689		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000368632	ENST00000254898		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000368632	ENST00000524308		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000368632	ENST00000522025		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000368632	ENST00000520016		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-intron	ENST00000368632	ENST00000518238		ChiTaRS3.1			BE150381	HDAC2	chr6	114268997	-	MATN2	chr8	98898618	+
intron-3UTR	ENST00000446828	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000424227	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000443863	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000535426	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000265026	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000448876	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000454237	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000438798	ENST00000534336		ChiTaRS3.1			AA778231	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-intron	ENST00000370951	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370951		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000405432		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370950		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000454435		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000436161		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000484162		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370949		ChiTaRS3.1			AA828061	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000434000	ENST00000434000		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000434000	ENST00000591680		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000434000	ENST00000586265		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000434000	ENST00000592154		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000434000	ENST00000588554		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000591680	ENST00000434000		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000591680	ENST00000591680		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000591680	ENST00000586265		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000591680	ENST00000592154		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000591680	ENST00000588554		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000586265	ENST00000434000		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000586265	ENST00000591680		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000586265	ENST00000586265		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000586265	ENST00000592154		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000586265	ENST00000588554		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000592154	ENST00000434000		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000592154	ENST00000591680		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000592154	ENST00000586265		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000592154	ENST00000592154		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000592154	ENST00000588554		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000588554	ENST00000434000		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000588554	ENST00000591680		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000588554	ENST00000586265		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000588554	ENST00000592154		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-intron	ENST00000588554	ENST00000588554		ChiTaRS3.1			BU852841	GPATCH8	chr17	42567110	-	GPATCH8	chr17	42567878	-
intron-3UTR	ENST00000421483	ENST00000227507		ChiTaRS3.1			DA845111	RAP2C-AS1	chrX	131508312	-	CCND1	chr11	69467548	+
intron-intron	ENST00000421483	ENST00000536559		ChiTaRS3.1			DA845111	RAP2C-AS1	chrX	131508312	-	CCND1	chr11	69467548	+
intron-3UTR	ENST00000441399	ENST00000227507		ChiTaRS3.1			DA845111	RAP2C-AS1	chrX	131508312	-	CCND1	chr11	69467548	+
intron-intron	ENST00000441399	ENST00000536559		ChiTaRS3.1			DA845111	RAP2C-AS1	chrX	131508312	-	CCND1	chr11	69467548	+
intron-3UTR	ENST00000393469	ENST00000258947		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000393469	ENST00000509507		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000393469	ENST00000448105		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000393469	ENST00000416445		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000393469	ENST00000508679		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000393469	ENST00000510997		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000423114	ENST00000258947		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000423114	ENST00000509507		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000423114	ENST00000448105		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000423114	ENST00000416445		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000423114	ENST00000508679		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000423114	ENST00000510997		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000469902	ENST00000258947		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000469902	ENST00000509507		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000469902	ENST00000448105		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000469902	ENST00000416445		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000469902	ENST00000508679		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000469902	ENST00000510997		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000314584	ENST00000258947		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000314584	ENST00000509507		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000314584	ENST00000448105		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000314584	ENST00000416445		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000314584	ENST00000508679		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000314584	ENST00000510997		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000430155	ENST00000258947		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000430155	ENST00000509507		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000430155	ENST00000448105		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000430155	ENST00000416445		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000430155	ENST00000508679		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000430155	ENST00000510997		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000465475	ENST00000258947		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000465475	ENST00000509507		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-3UTR	ENST00000465475	ENST00000448105		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000465475	ENST00000416445		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000465475	ENST00000508679		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000465475	ENST00000510997		ChiTaRS3.1			BP429101	SLC12A8	chr3	124811629	+	CALCOCO2	chr17	46940794	+
intron-intron	ENST00000540480	ENST00000390381		ChiTaRS3.1			BX497501	FAM120B	chr6	170683913	+	TRBV5-1	chr7	142457361	+
intron-intron	ENST00000537664	ENST00000390381		ChiTaRS3.1			BX497501	FAM120B	chr6	170683913	+	TRBV5-1	chr7	142457361	+
intron-intron	ENST00000476287	ENST00000390381		ChiTaRS3.1			BX497501	FAM120B	chr6	170683913	+	TRBV5-1	chr7	142457361	+
intron-intron	ENST00000252510	ENST00000390381		ChiTaRS3.1			BX497501	FAM120B	chr6	170683913	+	TRBV5-1	chr7	142457361	+
intron-intron	ENST00000496635	ENST00000390381		ChiTaRS3.1			BX497501	FAM120B	chr6	170683913	+	TRBV5-1	chr7	142457361	+
3UTR-3UTR	ENST00000269499	ENST00000269499		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
3UTR-3UTR	ENST00000269499	ENST00000586834		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
3UTR-intron	ENST00000269499	ENST00000590840		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
3UTR-3UTR	ENST00000586834	ENST00000269499		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
3UTR-3UTR	ENST00000586834	ENST00000586834		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
3UTR-intron	ENST00000586834	ENST00000590840		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
intron-3UTR	ENST00000590840	ENST00000269499		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
intron-3UTR	ENST00000590840	ENST00000586834		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
intron-intron	ENST00000590840	ENST00000590840		ChiTaRS3.1			BM978661	ZCCHC2	chr18	60244869	-	ZCCHC2	chr18	60244767	+
Frame-shit	ENST00000199940	ENST00000295598		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000199940	ENST00000537345		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000199940	ENST00000369496		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
5CDS-intron	ENST00000199940	ENST00000491156		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000360351	ENST00000295598		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000360351	ENST00000537345		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000360351	ENST00000369496		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
5CDS-intron	ENST00000360351	ENST00000491156		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000361559	ENST00000295598		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000361559	ENST00000537345		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000361559	ENST00000369496		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
5CDS-intron	ENST00000361559	ENST00000491156		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000392194	ENST00000295598		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000392194	ENST00000537345		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000392194	ENST00000369496		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
5CDS-intron	ENST00000392194	ENST00000491156		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000447185	ENST00000295598		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000447185	ENST00000537345		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
Frame-shit	ENST00000447185	ENST00000369496		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
5CDS-intron	ENST00000447185	ENST00000491156		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
3UTR-3CDS	ENST00000475600	ENST00000295598		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
3UTR-3CDS	ENST00000475600	ENST00000537345		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
3UTR-3CDS	ENST00000475600	ENST00000369496		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
3UTR-intron	ENST00000475600	ENST00000491156		ChiTaRS3.1			BE167361	MAP2	chr2	210574696	+	ATP1A1	chr1	116941647	+
intron-intron	ENST00000426333	ENST00000199940		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000426333	ENST00000360351		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000426333	ENST00000361559		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000426333	ENST00000392194		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000426333	ENST00000447185		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000426333	ENST00000475600		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000199940		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000592576	ENST00000360351		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000361559		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000592576	ENST00000392194		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000447185		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000475600		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000199940		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000591382	ENST00000360351		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000361559		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000591382	ENST00000392194		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000447185		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000475600		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000199940		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000402521	ENST00000360351		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000361559		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000402521	ENST00000392194		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000447185		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000475600		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000199940		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000589211	ENST00000360351		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000361559		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000589211	ENST00000392194		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000447185		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000475600		ChiTaRS3.1			AW498581	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000314393	ENST00000314393		ChiTaRS3.1			AK130891	ZHX2	chr8	123900259	+	ZHX2	chr8	123896758	+
3UTR-intron	ENST00000343139	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000395363	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
3UTR-intron	ENST00000374949	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000457246	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000453504	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000442315	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000450960	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000466849	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000456258	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000450614	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000441297	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000463379	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000420385	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000383251	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000548014	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000399678	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000399675	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000451947	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000443320	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000416403	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000442680	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000498769	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000550158	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000548597	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000418023	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000552932	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000547425	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-intron	ENST00000444296	ENST00000551765		ChiTaRS3.1			AA173991	HLA-DQA1	chr6	32610784	-	GATC	chr12	120901880	-
intron-3UTR	ENST00000368655	ENST00000368655		ChiTaRS3.1			AW073861	GATAD2B	chr1	153779245	+	GATAD2B	chr1	153777758	+
3UTR-3UTR	ENST00000553645	ENST00000553645		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000311089		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554339		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554871		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000540526		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000311089	ENST00000553645		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000311089		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554339		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554871		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000540526		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554339	ENST00000553645		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000311089		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554339		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554871		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000540526		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554871	ENST00000553645		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000311089		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554339		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554871		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000540526		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000540526	ENST00000553645		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000311089		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554339		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554871		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000540526		ChiTaRS3.1			BE504311	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000330676	ENST00000250559		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000393436		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000341355		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000537460		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000463493		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000450214		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000543393		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000378985		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000540209		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000539091		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000542145		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000543697		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-intron	ENST00000330676	ENST00000541216		ChiTaRS3.1			CB243131	TLCD2	chr17	1608418	+	RAP1B	chr12	69020646	-
intron-3CDS	ENST00000311127	ENST00000397410		ChiTaRS3.1			BF993001	HEG1	chr3	124732626	+	AKAP8L	chr19	15508405	-
intron-3CDS	ENST00000311127	ENST00000595465		ChiTaRS3.1			BF993001	HEG1	chr3	124732626	+	AKAP8L	chr19	15508405	-
intron-5UTR	ENST00000311127	ENST00000595879		ChiTaRS3.1			BF993001	HEG1	chr3	124732626	+	AKAP8L	chr19	15508405	-
intron-3CDS	ENST00000477536	ENST00000397410		ChiTaRS3.1			BF993001	HEG1	chr3	124732626	+	AKAP8L	chr19	15508405	-
intron-3CDS	ENST00000477536	ENST00000595465		ChiTaRS3.1			BF993001	HEG1	chr3	124732626	+	AKAP8L	chr19	15508405	-
intron-5UTR	ENST00000477536	ENST00000595879		ChiTaRS3.1			BF993001	HEG1	chr3	124732626	+	AKAP8L	chr19	15508405	-
intron-intron	ENST00000263339	ENST00000263339		ChiTaRS3.1			BQ353251	IL1A	chr2	113535795	+	IL1A	chr2	113535897	-
3UTR-intron	ENST00000451292	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000451292	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000377797	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000377797	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000445265	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000445265	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000323668	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000323668	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000439160	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000439160	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000394269	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000394269	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000504761	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000504761	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000513346	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
3UTR-intron	ENST00000513346	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000506063	ENST00000431677		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000506063	ENST00000423738		ChiTaRS3.1			CN479461	TCOF1	chr5	149779401	-	ARMCX4	chrX	100744617	-
intron-intron	ENST00000379649	ENST00000379649		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
intron-3UTR	ENST00000379649	ENST00000239878		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
intron-3UTR	ENST00000379649	ENST00000379641		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-intron	ENST00000239878	ENST00000379649		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-3UTR	ENST00000239878	ENST00000239878		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-3UTR	ENST00000239878	ENST00000379641		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-intron	ENST00000379641	ENST00000379649		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-3UTR	ENST00000379641	ENST00000239878		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-3UTR	ENST00000379641	ENST00000379641		ChiTaRS3.1			BE004601	UFM1	chr13	38936102	+	UFM1	chr13	38935741	-
3UTR-3CDS	ENST00000299001	ENST00000379214		ChiTaRS3.1			BE927951	PIWIL4	chr11	94354338	-	LGR4	chr11	27398729	+
3UTR-3CDS	ENST00000299001	ENST00000389858		ChiTaRS3.1			BE927951	PIWIL4	chr11	94354338	-	LGR4	chr11	27398729	+
3UTR-intron	ENST00000299001	ENST00000480977		ChiTaRS3.1			BE927951	PIWIL4	chr11	94354338	-	LGR4	chr11	27398729	+
intron-3CDS	ENST00000537419	ENST00000379214		ChiTaRS3.1			BE927951	PIWIL4	chr11	94354338	-	LGR4	chr11	27398729	+
intron-3CDS	ENST00000537419	ENST00000389858		ChiTaRS3.1			BE927951	PIWIL4	chr11	94354338	-	LGR4	chr11	27398729	+
intron-intron	ENST00000537419	ENST00000480977		ChiTaRS3.1			BE927951	PIWIL4	chr11	94354338	-	LGR4	chr11	27398729	+
5CDS-intron	ENST00000584667	ENST00000584667		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000355423		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000584667	ENST00000579864		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000584667		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000355423		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
5CDS-intron	ENST00000355423	ENST00000579864		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000584667		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000355423		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
3UTR-intron	ENST00000579864	ENST00000579864		ChiTaRS3.1			BE175391	SAP30BP	chr17	73698599	+	SAP30BP	chr17	73689562	-
intron-3UTR	ENST00000393946	ENST00000370558		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000393946	ENST00000535010		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000393946	ENST00000482504		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000525457	ENST00000370558		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000525457	ENST00000535010		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000525457	ENST00000482504		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000527043	ENST00000370558		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000527043	ENST00000535010		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000527043	ENST00000482504		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000526281	ENST00000370558		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000526281	ENST00000535010		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000526281	ENST00000482504		ChiTaRS3.1			BF995061	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
Frame-shit	ENST00000335272	ENST00000249064		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
Frame-shit	ENST00000335272	ENST00000448492		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
5CDS-intron	ENST00000335272	ENST00000421503		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
5CDS-5UTR	ENST00000335272	ENST00000443309		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
In-frame	ENST00000320996	ENST00000249064		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
In-frame	ENST00000320996	ENST00000448492		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
5CDS-intron	ENST00000320996	ENST00000421503		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
5CDS-5UTR	ENST00000320996	ENST00000443309		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
Frame-shit	ENST00000455418	ENST00000249064		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
Frame-shit	ENST00000455418	ENST00000448492		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
5CDS-intron	ENST00000455418	ENST00000421503		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
5CDS-5UTR	ENST00000455418	ENST00000443309		ChiTaRS3.1			DB095411	PITPNB	chr22	28306952	-	CCDC117	chr22	29176934	+
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BF095121	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000261182	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000393263	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000431879	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000547773	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000544816	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000542344	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000535020	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000549596	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000547993	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000552342	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000548044	ENST00000261182		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000393263		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000431879		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000547773		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000544816		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000542344		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000535020		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000549596		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000547993		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000552342		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000548044		ChiTaRS3.1			AI866991	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000395135	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395135	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000395132	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000268059	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000354026	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000268058	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
3UTR-intron	ENST00000565898	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569477	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569965	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000567543	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000435786	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000436891	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000564428	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000359928	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000563500	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000395135		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000395132		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000268059		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000354026		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000268058		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000565898		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000569477		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000569965		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000567543		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000435786		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000436891		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000564428		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000359928		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000563500		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000569161	ENST00000569161		ChiTaRS3.1			AF230401	PML	chr15	74337985	+	PML	chr15	74333420	-
intron-intron	ENST00000253408	ENST00000380121		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000253408	ENST00000504114		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000253408	ENST00000357505		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000253408	ENST00000399396		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000253408	ENST00000446957		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000253408	ENST00000267068		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000588735	ENST00000380121		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000588735	ENST00000504114		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000588735	ENST00000357505		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000588735	ENST00000399396		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000588735	ENST00000446957		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000588735	ENST00000267068		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000435360	ENST00000380121		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000435360	ENST00000504114		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000435360	ENST00000357505		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000435360	ENST00000399396		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000435360	ENST00000446957		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000435360	ENST00000267068		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000586793	ENST00000380121		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000586793	ENST00000504114		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000586793	ENST00000357505		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000586793	ENST00000399396		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000586793	ENST00000446957		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000586793	ENST00000267068		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000591327	ENST00000380121		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000591327	ENST00000504114		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000591327	ENST00000357505		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000591327	ENST00000399396		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000591327	ENST00000446957		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
intron-intron	ENST00000591327	ENST00000267068		ChiTaRS3.1			AL832581	GFAP	chr17	42983340	+	N4BP2L2	chr13	33099716	-
3UTR-intron	ENST00000262067	ENST00000522208		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
3UTR-intron	ENST00000262067	ENST00000521389		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
3UTR-intron	ENST00000262067	ENST00000261947		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
3UTR-intron	ENST00000262067	ENST00000520564		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
intron-intron	ENST00000466195	ENST00000522208		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
intron-intron	ENST00000466195	ENST00000521389		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
intron-intron	ENST00000466195	ENST00000261947		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
intron-intron	ENST00000466195	ENST00000520564		ChiTaRS3.1			AW843101	TSPAN13	chr7	16823920	-	RNF130	chr5	179390514	-
5CDS-intron	ENST00000356524	ENST00000483017		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-3UTR	ENST00000356524	ENST00000329146		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-3UTR	ENST00000356524	ENST00000548989		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-intron	ENST00000532858	ENST00000483017		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-3UTR	ENST00000532858	ENST00000329146		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-3UTR	ENST00000532858	ENST00000548989		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-intron	ENST00000405158	ENST00000483017		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-3UTR	ENST00000405158	ENST00000329146		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
5CDS-3UTR	ENST00000405158	ENST00000548989		ChiTaRS3.1			BP384371	SAA1	chr11	18290850	-	CRIP2	chr14	105946164	+
intron-intron	ENST00000476233	ENST00000356692		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000476233	ENST00000295862		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000476233	ENST00000394284		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000476233	ENST00000495566		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000354667	ENST00000356692		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000354667	ENST00000295862		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000354667	ENST00000394284		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000354667	ENST00000495566		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000356674	ENST00000356692		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000356674	ENST00000295862		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000356674	ENST00000394284		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
intron-intron	ENST00000356674	ENST00000495566		ChiTaRS3.1			AV713871	HNRNPA2B1	chr7	26237258	-	PPP4R2	chr3	73112195	+
3UTR-3UTR	ENST00000545225	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000545225	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000545225	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000545225	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000545225	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000545225	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000545225	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000590720	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000590720	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000590720	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000541124	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000541124	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000541124	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592578	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592578	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592578	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000441946	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000441946	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000441946	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000293362	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000293362	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000293362	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000545225		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592169	ENST00000590720		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000541124		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592169	ENST00000592578		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000441946		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000293362		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592169	ENST00000592169		ChiTaRS3.1			BM971211	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3CDS	ENST00000388825	ENST00000388825		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
3UTR-intron	ENST00000388825	ENST00000521722		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
3UTR-intron	ENST00000388825	ENST00000517973		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-3CDS	ENST00000521722	ENST00000388825		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-intron	ENST00000521722	ENST00000521722		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-intron	ENST00000521722	ENST00000517973		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-3CDS	ENST00000517973	ENST00000388825		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-intron	ENST00000517973	ENST00000521722		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-intron	ENST00000517973	ENST00000517973		ChiTaRS3.1			BG430541	GPX3	chr5	150407832	+	GPX3	chr5	150406467	+
intron-intron	ENST00000395905	ENST00000395905		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000395905	ENST00000296144		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000395905	ENST00000496388		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000296144	ENST00000395905		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000296144	ENST00000296144		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000296144	ENST00000496388		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000496388	ENST00000395905		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000496388	ENST00000296144		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-intron	ENST00000496388	ENST00000496388		ChiTaRS3.1			CA773411	LRRC2	chr3	46569489	-	LRRC2	chr3	46571831	-
intron-3CDS	ENST00000396368	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000396368	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000396368	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000396368	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000396368	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000396368	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000396368	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000540441	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000540441	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000540441	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000540441	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000540441	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000540441	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000540441	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000344181	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000344181	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000344181	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000344181	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000344181	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000344181	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000344181	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000551742	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000551742	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000551742	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000551742	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000551742	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000551742	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000551742	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000602337	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000602337	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000602337	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000602337	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000602337	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000602337	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000602337	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000548025	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000548025	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000548025	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000548025	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000548025	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000548025	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000548025	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000547936	ENST00000396368		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000547936	ENST00000540441		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000547936	ENST00000344181		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000547936	ENST00000551742		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000547936	ENST00000602337		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-3CDS	ENST00000547936	ENST00000548025		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
intron-intron	ENST00000547936	ENST00000547936		ChiTaRS3.1			AA526011	KIAA0430	chr16	15698057	-	KIAA0430	chr16	15695987	+
In-frame	ENST00000395309	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395309	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395309	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395309	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395309	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395309	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395309	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395309	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395309	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000413890	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000413890	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000413890	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000438792	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000438792	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000438792	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395314	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395314	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395314	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395308	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395308	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395308	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000395311	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395311	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000395311	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
In-frame	ENST00000416613	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000416613	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
5CDS-intron	ENST00000416613	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000554507	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-intron	ENST00000554507	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-intron	ENST00000554507	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000395309		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000413890		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000438792		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000395314		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000395308		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000395311		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-3CDS	ENST00000555573	ENST00000416613		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-intron	ENST00000555573	ENST00000554507		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-intron	ENST00000555573	ENST00000555573		ChiTaRS3.1			AW291751	KTN1	chr14	56078787	-	KTN1	chr14	56084722	-
intron-intron	ENST00000290649	ENST00000376007		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000469577		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000376033		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000549037		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000551794		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000435971		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000485195		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000428775		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000550674		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000548373		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000439762		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000416335		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000473169		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000550109		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000550609		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000454306		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000468994		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000432252		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000551341		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000547457		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000383464		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000470109		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000383455		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000547056		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000549383		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000458561		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000466607		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000414956		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000547669		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000549768		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000430737		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000484613		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000290649	ENST00000422962		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000376007		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000469577		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000376033		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000549037		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000551794		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000435971		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000485195		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000428775		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000550674		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000548373		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000439762		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000416335		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000473169		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000550109		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000550609		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000454306		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000468994		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000432252		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000551341		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000547457		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000383464		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000470109		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000383455		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000547056		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000549383		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000458561		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000466607		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000414956		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000547669		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000549768		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000430737		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000484613		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-intron	ENST00000564283	ENST00000422962		ChiTaRS3.1			BI014521	AMFR	chr16	56395779	-	PRRC2A	chr6	2982781	-
intron-3UTR	ENST00000322244	ENST00000322244		ChiTaRS3.1			AA376811	UBA6	chr4	68483165	-	UBA6	chr4	68483200	+
intron-intron	ENST00000322244	ENST00000420827		ChiTaRS3.1			AA376811	UBA6	chr4	68483165	-	UBA6	chr4	68483200	+
intron-3UTR	ENST00000420827	ENST00000322244		ChiTaRS3.1			AA376811	UBA6	chr4	68483165	-	UBA6	chr4	68483200	+
intron-intron	ENST00000420827	ENST00000420827		ChiTaRS3.1			AA376811	UBA6	chr4	68483165	-	UBA6	chr4	68483200	+
3UTR-3CDS	ENST00000338446	ENST00000466548		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000338446	ENST00000418532		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000338446	ENST00000488699		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000338446	ENST00000267219		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000338446	ENST00000351546		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3UTR	ENST00000338446	ENST00000465831		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000338446	ENST00000314070		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000338446	ENST00000358679		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000360570	ENST00000466548		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000360570	ENST00000418532		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000360570	ENST00000488699		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000360570	ENST00000267219		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000360570	ENST00000351546		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3UTR	ENST00000360570	ENST00000465831		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000360570	ENST00000314070		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000360570	ENST00000358679		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393035	ENST00000466548		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393035	ENST00000418532		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393035	ENST00000488699		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393035	ENST00000267219		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393035	ENST00000351546		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3UTR	ENST00000393035	ENST00000465831		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000393035	ENST00000314070		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000393035	ENST00000358679		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393034	ENST00000466548		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393034	ENST00000418532		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393034	ENST00000488699		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393034	ENST00000267219		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3CDS	ENST00000393034	ENST00000351546		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-3UTR	ENST00000393034	ENST00000465831		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000393034	ENST00000314070		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
3UTR-intron	ENST00000393034	ENST00000358679		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3CDS	ENST00000464668	ENST00000466548		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3CDS	ENST00000464668	ENST00000418532		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3CDS	ENST00000464668	ENST00000488699		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3CDS	ENST00000464668	ENST00000267219		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3CDS	ENST00000464668	ENST00000351546		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3UTR	ENST00000464668	ENST00000465831		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-intron	ENST00000464668	ENST00000314070		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-intron	ENST00000464668	ENST00000358679		ChiTaRS3.1			W07321	FAIM	chr3	138352063	-	SLAIN1	chr13	78320728	-
intron-3UTR	ENST00000305557	ENST00000246554		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000305557	ENST00000592141		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000305557	ENST00000392201		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000272430	ENST00000246554		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000272430	ENST00000592141		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000272430	ENST00000392201		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000233330	ENST00000246554		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000233330	ENST00000592141		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000233330	ENST00000392201		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000484453	ENST00000246554		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000484453	ENST00000592141		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
intron-3UTR	ENST00000484453	ENST00000392201		ChiTaRS3.1			AA478511	RTKN	chr2	74653429	-	COX6B1	chr19	36149615	+
3UTR-3CDS	ENST00000422163	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000422163	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000491100	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000491100	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000313601	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000313601	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000536647	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000536647	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000440628	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000440628	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000451956	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000451956	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000266027	ENST00000394936		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
3UTR-3CDS	ENST00000266027	ENST00000394934		ChiTaRS3.1			BE707091	GNAI2	chr3	50295821	-	PSAP	chr10	73580054	-
intron-3UTR	ENST00000545260	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000545693	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000350537	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000346874	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374789	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374790	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374794	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374788	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000466092	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374776	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000340077	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000544292	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374773	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-3UTR	ENST00000374768	ENST00000295522		ChiTaRS3.1			R27501	PARD3	chr10	35084174	-	CLDN1	chr3	190025563	-
intron-intron	ENST00000359282	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359282	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359282	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359282	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359282	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359282	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000603815	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000603815	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000603815	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000603815	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000603815	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000437231	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000437231	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000437231	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000437231	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000437231	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000447282	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000447282	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000447282	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000447282	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000447282	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000549863	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000549863	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000549863	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000549863	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000549863	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359462	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359462	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359462	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000359462	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000359462	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000546463	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000546463	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000546463	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000546463	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000546463	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552296	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552296	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552296	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552296	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552296	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552819	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552819	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552819	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000552819	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000552819	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000455667	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000455667	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000455667	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-3UTR	ENST00000455667	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
3UTR-intron	ENST00000455667	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000439930	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000439930	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000439930	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000439930	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000439930	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000548933	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000548933	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000548933	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000548933	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000548933	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000359282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000541275	ENST00000603815		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000541275	ENST00000437231		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000541275	ENST00000447282		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000549863		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000359462		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000546463		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000552296		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000552819		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-3UTR	ENST00000541275	ENST00000455667		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000439930		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000548933		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000541275	ENST00000541275		ChiTaRS3.1			CX781671	PCBP2	chr12	53874608	-	PCBP2	chr12	53874171	+
intron-intron	ENST00000318560	ENST00000305877		ChiTaRS3.1			JQ425243	ABL1	chr9	133609600	+	BCR	chr22	23633410	+
intron-intron	ENST00000318560	ENST00000359540		ChiTaRS3.1			JQ425243	ABL1	chr9	133609600	+	BCR	chr22	23633410	+
intron-intron	ENST00000318560	ENST00000398512		ChiTaRS3.1			JQ425243	ABL1	chr9	133609600	+	BCR	chr22	23633410	+
intron-intron	ENST00000318560	ENST00000436990		ChiTaRS3.1			JQ425243	ABL1	chr9	133609600	+	BCR	chr22	23633410	+
intron-intron	ENST00000356239	ENST00000356239		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000358100		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000359028		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000394564		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000356239		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000358100		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000359028		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000394564		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000356239		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000358100		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000359028		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000394564		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000356239		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000358100		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000359028		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000394564		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000356239		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000358100		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000359028		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000394564		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BQ187681	AKAP9	chr7	91732433	+	AKAP9	chr7	91725926	+
intron-3UTR	ENST00000433301	ENST00000558401		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000433301	ENST00000559916		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000433301	ENST00000544417		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000433301	ENST00000559220		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409246	ENST00000558401		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409246	ENST00000559916		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409246	ENST00000544417		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409246	ENST00000559220		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000392672	ENST00000558401		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000392672	ENST00000559916		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000392672	ENST00000544417		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000392672	ENST00000559220		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409300	ENST00000558401		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409300	ENST00000559916		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409300	ENST00000544417		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409300	ENST00000559220		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409425	ENST00000558401		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409425	ENST00000559916		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409425	ENST00000544417		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409425	ENST00000559220		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409778	ENST00000558401		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409778	ENST00000559916		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000409778	ENST00000544417		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-3UTR	ENST00000409778	ENST00000559220		ChiTaRS3.1			EL594131	RAD9B	chr12	110954428	+	B2M	chr15	45010021	-
intron-intron	ENST00000302640	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000302640		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000354582		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000423119		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000456211		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000357086		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000544951		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000443694		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000463980		ChiTaRS3.1			BE175861	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-3CDS	ENST00000508803	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000508803	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000508803	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382892	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382892	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000382892	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382891	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382891	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000382891	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382895	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382895	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000382895	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000482415	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000482415	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000482415	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382888	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000382888	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000382888	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000514045	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000514045	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000514045	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000436793	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000436793	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000436793	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000420906	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000420906	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000420906	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000503128	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000503128	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000503128	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000398261	ENST00000400921		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3CDS	ENST00000398261	ENST00000400920		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
intron-3UTR	ENST00000398261	ENST00000479263		ChiTaRS3.1			CF529961	WHSC1	chr4	1979386	-	PRKCZ	chr1	2116108	-
5CDS-intron	ENST00000262039	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000262039	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000398870	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000586545	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000590220	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5CDS-intron	ENST00000593098	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000589056	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587402	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
5UTR-intron	ENST00000588156	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000416037		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000417327		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000439129		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000608974		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000536447		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000595777		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000600968		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000434834		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000610250		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000451451		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000608288		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000587328	ENST00000608491		ChiTaRS3.1			CB124531	PIK3C3	chr18	39637909	-	NDUFA6-AS1	chr22	42504914	-
intron-intron	ENST00000481646	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000481646	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000469044	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000491704	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000358441	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000489213	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000461822	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000485396	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000471453	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000470821	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000393058	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000481646		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000469044		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000491704		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000358441		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000489213		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000461822		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000485396		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000471453		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000470821		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000393058		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000538260	ENST00000538260		ChiTaRS3.1			CD644321	ARMC8	chr3	137954017	-	ARMC8	chr3	137953624	+
intron-intron	ENST00000256447	ENST00000504487		ChiTaRS3.1			AI270381	CD180	chr5	66478393	+	CCDC149	chr4	24903025	+
intron-intron	ENST00000256447	ENST00000428116		ChiTaRS3.1			AI270381	CD180	chr5	66478393	+	CCDC149	chr4	24903025	+
intron-intron	ENST00000256447	ENST00000389609		ChiTaRS3.1			AI270381	CD180	chr5	66478393	+	CCDC149	chr4	24903025	+
intron-intron	ENST00000256447	ENST00000502801		ChiTaRS3.1			AI270381	CD180	chr5	66478393	+	CCDC149	chr4	24903025	+
intron-intron	ENST00000256447	ENST00000508236		ChiTaRS3.1			AI270381	CD180	chr5	66478393	+	CCDC149	chr4	24903025	+
intron-intron	ENST00000425708	ENST00000299381		ChiTaRS3.1			BI037431	ZNF445	chr3	44485863	+	ANAPC16	chr10	73772718	-
intron-intron	ENST00000425708	ENST00000470481		ChiTaRS3.1			BI037431	ZNF445	chr3	44485863	+	ANAPC16	chr10	73772718	-
intron-intron	ENST00000396077	ENST00000299381		ChiTaRS3.1			BI037431	ZNF445	chr3	44485863	+	ANAPC16	chr10	73772718	-
intron-intron	ENST00000396077	ENST00000470481		ChiTaRS3.1			BI037431	ZNF445	chr3	44485863	+	ANAPC16	chr10	73772718	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766241	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766241	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000344824	ENST00000369878		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000344824	ENST00000433628		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000344824	ENST00000369875		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000344824	ENST00000475511		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000538887	ENST00000369878		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000538887	ENST00000433628		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000538887	ENST00000369875		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000538887	ENST00000475511		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
3UTR-intron	ENST00000300933	ENST00000369878		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
3UTR-intron	ENST00000300933	ENST00000433628		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
3UTR-intron	ENST00000300933	ENST00000369875		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
3UTR-intron	ENST00000300933	ENST00000475511		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000591645	ENST00000369878		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000591645	ENST00000433628		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000591645	ENST00000369875		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-intron	ENST00000591645	ENST00000475511		ChiTaRS3.1			N99591	TPM4	chr19	16212926	+	CNNM2	chr10	104783102	-
intron-3CDS	ENST00000261726	ENST00000053867		ChiTaRS3.1			BF892251	CUX2	chr12	111665731	+	GRN	chr17	42428935	-
intron-3CDS	ENST00000261726	ENST00000589265		ChiTaRS3.1			BF892251	CUX2	chr12	111665731	+	GRN	chr17	42428935	-
intron-3UTR	ENST00000261726	ENST00000589923		ChiTaRS3.1			BF892251	CUX2	chr12	111665731	+	GRN	chr17	42428935	-
intron-3CDS	ENST00000551604	ENST00000053867		ChiTaRS3.1			BF892251	CUX2	chr12	111665731	+	GRN	chr17	42428935	-
intron-3CDS	ENST00000551604	ENST00000589265		ChiTaRS3.1			BF892251	CUX2	chr12	111665731	+	GRN	chr17	42428935	-
intron-3UTR	ENST00000551604	ENST00000589923		ChiTaRS3.1			BF892251	CUX2	chr12	111665731	+	GRN	chr17	42428935	-
3UTR-3UTR	ENST00000395146	ENST00000265192		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-intron	ENST00000395146	ENST00000511381		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-intron	ENST00000395146	ENST00000511706		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000395146	ENST00000394795		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000395146	ENST00000510080		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000307808	ENST00000265192		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-intron	ENST00000307808	ENST00000511381		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-intron	ENST00000307808	ENST00000511706		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000307808	ENST00000394795		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000307808	ENST00000510080		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000544085	ENST00000265192		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-intron	ENST00000544085	ENST00000511381		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-intron	ENST00000544085	ENST00000511706		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000544085	ENST00000394795		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
3UTR-3UTR	ENST00000544085	ENST00000510080		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
intron-3UTR	ENST00000511996	ENST00000265192		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
intron-intron	ENST00000511996	ENST00000511381		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
intron-intron	ENST00000511996	ENST00000511706		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
intron-3UTR	ENST00000511996	ENST00000394795		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
intron-3UTR	ENST00000511996	ENST00000510080		ChiTaRS3.1			R34011	AFF1	chr4	88056966	+	PAIP2	chr5	138704720	+
intron-3UTR	ENST00000288840	ENST00000369582		ChiTaRS3.1			BQ367091	SMAD6	chr15	67040351	-	CGA	chr6	87795378	+
intron-3UTR	ENST00000457357	ENST00000369582		ChiTaRS3.1			BQ367091	SMAD6	chr15	67040351	-	CGA	chr6	87795378	+
intron-3UTR	ENST00000338426	ENST00000369582		ChiTaRS3.1			BQ367091	SMAD6	chr15	67040351	-	CGA	chr6	87795378	+
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006741	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
3UTR-3CDS	ENST00000343837	ENST00000343837		ChiTaRS3.1			CB852381	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
3UTR-intron	ENST00000343837	ENST00000496807		ChiTaRS3.1			CB852381	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
intron-3CDS	ENST00000496807	ENST00000343837		ChiTaRS3.1			CB852381	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
intron-intron	ENST00000496807	ENST00000496807		ChiTaRS3.1			CB852381	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
intron-5UTR	ENST00000317977	ENST00000404648		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000405164		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000336098		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000407946		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000404648		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000405164		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000336098		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000407946		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000404648		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000405164		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000336098		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000407946		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000404648		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000405164		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000336098		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000407946		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000404648		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000405164		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000336098		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000407946		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000404648		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000405164		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000336098		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000407946		ChiTaRS3.1			AV657451	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-intron	ENST00000389916	ENST00000390548		ChiTaRS3.1			AK090911	KIF19	chr17	72322352	-	IGHG1	chr22	22841549	+
intron-intron	ENST00000437099	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000437099	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000323816	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000323816	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000432992	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000432992	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000540214	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000540214	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000585266	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000585266	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000580865	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000580865	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000583882	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000583882	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000542249	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000542249	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000396115	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000396115	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000579158	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000579158	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000578655	ENST00000468573		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
intron-intron	ENST00000578655	ENST00000255380		ChiTaRS3.1			BE149291	GAS7	chr17	9977178	+	CHRM3	chr1	239906900	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW580841	MALAT1	chr11	65267741	-	MALAT1	chr11	65267766	+
In-frame	ENST00000439576	ENST00000439576		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000439576	ENST00000558207		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000439576	ENST00000559004		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000439576	ENST00000352105		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000439576	ENST00000561243		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
intron-3CDS	ENST00000558207	ENST00000439576		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
intron-intron	ENST00000558207	ENST00000558207		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
intron-intron	ENST00000558207	ENST00000559004		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
intron-intron	ENST00000558207	ENST00000352105		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
intron-intron	ENST00000558207	ENST00000561243		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
In-frame	ENST00000559004	ENST00000439576		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000559004	ENST00000558207		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000559004	ENST00000559004		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000559004	ENST00000352105		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000559004	ENST00000561243		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
In-frame	ENST00000352105	ENST00000439576		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000352105	ENST00000558207		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000352105	ENST00000559004		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000352105	ENST00000352105		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000352105	ENST00000561243		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
In-frame	ENST00000561243	ENST00000439576		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000561243	ENST00000558207		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000561243	ENST00000559004		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000561243	ENST00000352105		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
5CDS-intron	ENST00000561243	ENST00000561243		ChiTaRS3.1			BG900931	ACAN	chr15	89401562	-	ACAN	chr15	89401655	+
Frame-shit	ENST00000322038	ENST00000322038		ChiTaRS3.1			AW631381	TSHZ1	chr18	72998634	+	TSHZ1	chr18	72997898	+
Frame-shit	ENST00000322038	ENST00000580243		ChiTaRS3.1			AW631381	TSHZ1	chr18	72998634	+	TSHZ1	chr18	72997898	+
Frame-shit	ENST00000580243	ENST00000322038		ChiTaRS3.1			AW631381	TSHZ1	chr18	72998634	+	TSHZ1	chr18	72997898	+
In-frame	ENST00000580243	ENST00000580243		ChiTaRS3.1			AW631381	TSHZ1	chr18	72998634	+	TSHZ1	chr18	72997898	+
intron-intron	ENST00000301923	ENST00000301923		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000301923	ENST00000402203		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000301923	ENST00000454349		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000301923	ENST00000335727		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000301923	ENST00000497559		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000402203	ENST00000301923		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000402203	ENST00000402203		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000402203	ENST00000454349		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000402203	ENST00000335727		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000402203	ENST00000497559		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000454349	ENST00000301923		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000454349	ENST00000402203		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000454349	ENST00000454349		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000454349	ENST00000335727		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000454349	ENST00000497559		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000335727	ENST00000301923		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000335727	ENST00000402203		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000335727	ENST00000454349		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000335727	ENST00000335727		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000335727	ENST00000497559		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000497559	ENST00000301923		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000497559	ENST00000402203		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000497559	ENST00000454349		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000497559	ENST00000335727		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000497559	ENST00000497559		ChiTaRS3.1			BQ893691	TNRC6B	chr22	40701103	+	TNRC6B	chr22	40695662	+
intron-intron	ENST00000376059	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000376059	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000376049	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000376049	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000414149	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000414149	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000419376	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000419376	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000425748	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000425748	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000416422	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000416422	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000413349	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000413349	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000415830	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000415830	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383474	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383474	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000488491	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000488491	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383473	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383473	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000440907	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000440907	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000549432	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000549432	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000424944	ENST00000299601		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000424944	ENST00000315141		ChiTaRS3.1			BE843191	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-3UTR	ENST00000571846	ENST00000389709		ChiTaRS3.1			BE670301	CYB5D1	chr17	7764397	-	ZXDC	chr3	126156688	-
intron-intron	ENST00000571846	ENST00000336332		ChiTaRS3.1			BE670301	CYB5D1	chr17	7764397	-	ZXDC	chr3	126156688	-
3UTR-3UTR	ENST00000332439	ENST00000389709		ChiTaRS3.1			BE670301	CYB5D1	chr17	7764397	-	ZXDC	chr3	126156688	-
3UTR-intron	ENST00000332439	ENST00000336332		ChiTaRS3.1			BE670301	CYB5D1	chr17	7764397	-	ZXDC	chr3	126156688	-
intron-3UTR	ENST00000570446	ENST00000389709		ChiTaRS3.1			BE670301	CYB5D1	chr17	7764397	-	ZXDC	chr3	126156688	-
intron-intron	ENST00000570446	ENST00000336332		ChiTaRS3.1			BE670301	CYB5D1	chr17	7764397	-	ZXDC	chr3	126156688	-
3UTR-3CDS	ENST00000375749	ENST00000357710		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000324501		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000344094		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000261970		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000394164		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000557511		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000406768		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000394157		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-intron	ENST00000375749	ENST00000553447		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000357710		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000324501		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000344094		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000261970		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000394164		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000557511		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000406768		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000394157		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000375730	ENST00000553447		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000357710		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000324501		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000344094		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000261970		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000394164		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000557511		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000406768		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000394157		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000539210	ENST00000553447		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000357710		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000324501		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000344094		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000261970		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000394164		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000557511		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000406768		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000394157		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000486717	ENST00000553447		ChiTaRS3.1			AW374421	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000509018	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000509018	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000509018	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000509018	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000509018	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000307984	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000307984	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000307984	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000307984	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000307984	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000507093	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000507093	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000507093	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000507093	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000507093	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000296859	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000296859	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000296859	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000296859	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000296859	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000512052	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000512052	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000512052	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000512052	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000512052	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000308008	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000308008	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000308008	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000308008	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000308008	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000510071	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000510071	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000510071	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000510071	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000510071	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000503398	ENST00000261304		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-5UTR	ENST00000503398	ENST00000544807		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000503398	ENST00000393569		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000503398	ENST00000393568		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
intron-intron	ENST00000503398	ENST00000554916		ChiTaRS3.1			U77631	RAPGEF6	chr5	130928129	+	GALC	chr14	88458945	-
5CDS-intron	ENST00000380358	ENST00000359947		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000380358	ENST00000438120		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000380358	ENST00000372413		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000380358	ENST00000372414		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000380358	ENST00000422171		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000380358	ENST00000496447		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000358181	ENST00000359947		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000358181	ENST00000438120		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000358181	ENST00000372413		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000358181	ENST00000372414		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000358181	ENST00000422171		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000358181	ENST00000496447		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000330494	ENST00000359947		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000330494	ENST00000438120		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000330494	ENST00000372413		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000330494	ENST00000372414		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000330494	ENST00000422171		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
5CDS-intron	ENST00000330494	ENST00000496447		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-intron	ENST00000570758	ENST00000359947		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-intron	ENST00000570758	ENST00000438120		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-intron	ENST00000570758	ENST00000372413		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-intron	ENST00000570758	ENST00000372414		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-intron	ENST00000570758	ENST00000422171		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-intron	ENST00000570758	ENST00000496447		ChiTaRS3.1			BF996711	CHD3	chr17	7803997	-	PTPRF	chr1	44065089	+
intron-3CDS	ENST00000263642	ENST00000263642		ChiTaRS3.1			AI906351	IFIH1	chr2	163174693	+	IFIH1	chr2	163174777	-
intron-3CDS	ENST00000263642	ENST00000421365		ChiTaRS3.1			AI906351	IFIH1	chr2	163174693	+	IFIH1	chr2	163174777	-
intron-3CDS	ENST00000421365	ENST00000263642		ChiTaRS3.1			AI906351	IFIH1	chr2	163174693	+	IFIH1	chr2	163174777	-
intron-3CDS	ENST00000421365	ENST00000421365		ChiTaRS3.1			AI906351	IFIH1	chr2	163174693	+	IFIH1	chr2	163174777	-
intron-3CDS	ENST00000317089	ENST00000378330		ChiTaRS3.1			BF326211	DNAJA2	chr16	46990865	+	ANKRD11	chr16	89350945	-
intron-3CDS	ENST00000317089	ENST00000301030		ChiTaRS3.1			BF326211	DNAJA2	chr16	46990865	+	ANKRD11	chr16	89350945	-
intron-intron	ENST00000317089	ENST00000563291		ChiTaRS3.1			BF326211	DNAJA2	chr16	46990865	+	ANKRD11	chr16	89350945	-
intron-intron	ENST00000317089	ENST00000567736		ChiTaRS3.1			BF326211	DNAJA2	chr16	46990865	+	ANKRD11	chr16	89350945	-
intron-3UTR	ENST00000519824	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000519824	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000522746	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000523509	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000401979	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000519110	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000522250	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000517654	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000519540	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000522941	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000519824		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000522746		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000523509		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000401979		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000519110		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000522250		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000517654		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000519540		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000522941		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000518879	ENST00000518879		ChiTaRS3.1			AW969701	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000267884	ENST00000568449		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000267884	ENST00000307394		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000558527	ENST00000568449		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000558527	ENST00000307394		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000558720	ENST00000568449		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000558720	ENST00000307394		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000560773	ENST00000568449		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000560773	ENST00000307394		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000559081	ENST00000568449		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000559081	ENST00000307394		ChiTaRS3.1			CN337981	SRP14	chr15	40330565	-	EME2	chr16	1824946	+
intron-intron	ENST00000446906	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000446906	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000446906	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000446906	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000446906	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000446906	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000446906	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377072	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000307729	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377059	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000495130	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377100	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000585509		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000589297		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000591455		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000446868		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000361101		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000589296		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000377091	ENST00000586175		ChiTaRS3.1			AW381251	MLLT10	chr10	21983195	-	CYTH1	chr17	76705733	+
intron-intron	ENST00000256413	ENST00000310682		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-3UTR	ENST00000256413	ENST00000394266		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000256413	ENST00000219315		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000256413	ENST00000418480		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000382998	ENST00000310682		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-3UTR	ENST00000382998	ENST00000394266		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000382998	ENST00000219315		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000382998	ENST00000418480		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000592658	ENST00000310682		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-3UTR	ENST00000592658	ENST00000394266		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000592658	ENST00000219315		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
intron-intron	ENST00000592658	ENST00000418480		ChiTaRS3.1			AK127251	CTIF	chr18	46094713	+	SETD6	chr16	58554139	-
5CDS-intron	ENST00000316963	ENST00000381125		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000316963	ENST00000381075		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000316963	ENST00000421751		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000316963	ENST00000381072		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000343231	ENST00000381125		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000343231	ENST00000381075		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000343231	ENST00000421751		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000343231	ENST00000381072		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000522007	ENST00000381125		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000522007	ENST00000381075		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000522007	ENST00000421751		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5CDS-intron	ENST00000522007	ENST00000381072		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5UTR-intron	ENST00000519926	ENST00000381125		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5UTR-intron	ENST00000519926	ENST00000381075		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5UTR-intron	ENST00000519926	ENST00000421751		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
5UTR-intron	ENST00000519926	ENST00000381072		ChiTaRS3.1			DB459081	LYPLA1	chr8	55013468	-	PFKP	chr10	3154577	-
intron-intron	ENST00000440909	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000440909	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000448921	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000448921	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000437397	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000437397	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000355814	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000355814	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393087	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393087	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393088	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000393088	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000404814	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000404814	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000449399	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000449399	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000402629	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000402629	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000555289	ENST00000329957		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-intron	ENST00000555289	ENST00000526462		ChiTaRS3.1			BX500961	SERPINA1	chr14	94845837	+	MOB2	chr11	1756104	-
intron-3CDS	ENST00000269033	ENST00000262865		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3UTR	ENST00000269033	ENST00000489102		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000269033	ENST00000451435		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3CDS	ENST00000540801	ENST00000262865		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3UTR	ENST00000540801	ENST00000489102		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000540801	ENST00000451435		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3CDS	ENST00000324677	ENST00000262865		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3UTR	ENST00000324677	ENST00000489102		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000324677	ENST00000451435		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3CDS	ENST00000582084	ENST00000262865		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3UTR	ENST00000582084	ENST00000489102		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000582084	ENST00000451435		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3CDS	ENST00000590153	ENST00000262865		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3UTR	ENST00000590153	ENST00000489102		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000590153	ENST00000451435		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3CDS	ENST00000579954	ENST00000262865		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-3UTR	ENST00000579954	ENST00000489102		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000579954	ENST00000451435		ChiTaRS3.1			BI025041	SSH2	chr17	27959353	+	BPI	chr20	36955989	+
intron-intron	ENST00000538184	ENST00000538184		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000538184	ENST00000502274		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000538184	ENST00000515425		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000538184	ENST00000512049		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000538184	ENST00000394358		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000538184	ENST00000513340		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000502274	ENST00000538184		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000502274	ENST00000502274		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000502274	ENST00000515425		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000502274	ENST00000512049		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000502274	ENST00000394358		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000502274	ENST00000513340		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000515425	ENST00000538184		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000515425	ENST00000502274		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000515425	ENST00000515425		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000515425	ENST00000512049		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000515425	ENST00000394358		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000515425	ENST00000513340		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000512049	ENST00000538184		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000512049	ENST00000502274		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000512049	ENST00000515425		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000512049	ENST00000512049		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000512049	ENST00000394358		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000512049	ENST00000513340		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000394358	ENST00000538184		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000394358	ENST00000502274		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000394358	ENST00000515425		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000394358	ENST00000512049		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000394358	ENST00000394358		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000394358	ENST00000513340		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000513340	ENST00000538184		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000513340	ENST00000502274		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000513340	ENST00000515425		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000513340	ENST00000512049		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000513340	ENST00000394358		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000513340	ENST00000513340		ChiTaRS3.1			AV726151	SH3TC2	chr5	148250111	+	SH3TC2	chr5	148248823	+
intron-intron	ENST00000397149	ENST00000453189		ChiTaRS3.1			AA476801	SMU1	chr9	33068894	-	DNAJC9	chr10	75007218	-
intron-5UTR	ENST00000397149	ENST00000372950		ChiTaRS3.1			AA476801	SMU1	chr9	33068894	-	DNAJC9	chr10	75007218	-
intron-intron	ENST00000536631	ENST00000453189		ChiTaRS3.1			AA476801	SMU1	chr9	33068894	-	DNAJC9	chr10	75007218	-
intron-5UTR	ENST00000536631	ENST00000372950		ChiTaRS3.1			AA476801	SMU1	chr9	33068894	-	DNAJC9	chr10	75007218	-
intron-3CDS	ENST00000378460	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000378460	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000378460	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000378460	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000378460	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000530326	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000530326	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000530326	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000530326	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000530326	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000528071	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000528071	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000528071	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000528071	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000528071	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000528501	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000528501	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000528501	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000528501	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000528501	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000531016	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000531016	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000531016	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000531016	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000531016	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000532747	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000532747	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000532747	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000532747	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000532747	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000526870	ENST00000380394		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000526870	ENST00000498815		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000526870	ENST00000380384		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-intron	ENST00000526870	ENST00000315377		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3UTR	ENST00000526870	ENST00000380381		ChiTaRS3.1			BG874971	NUP160	chr11	47800689	+	RPS6	chr9	19378842	-
intron-3CDS	ENST00000215095	ENST00000371561		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3CDS	ENST00000215095	ENST00000315048		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000471122		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000350902		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000371553		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000371546		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000371559		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000371555		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000371550		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000215095	ENST00000371560		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3CDS	ENST00000565419	ENST00000371561		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3CDS	ENST00000565419	ENST00000315048		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000471122		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000350902		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000371553		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000371546		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000371559		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000371555		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000371550		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
intron-3UTR	ENST00000565419	ENST00000371560		ChiTaRS3.1			BF954561	STX1B	chr16	31002057	+	GRIN1	chr9	140040214	+
3UTR-3CDS	ENST00000313269	ENST00000346348		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-3CDS	ENST00000313269	ENST00000314673		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-3CDS	ENST00000313269	ENST00000513865		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-intron	ENST00000313269	ENST00000505648		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-intron	ENST00000313269	ENST00000508980		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-intron	ENST00000313269	ENST00000369627		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-3CDS	ENST00000395068	ENST00000346348		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-3CDS	ENST00000395068	ENST00000314673		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-3CDS	ENST00000395068	ENST00000513865		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-intron	ENST00000395068	ENST00000505648		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-intron	ENST00000395068	ENST00000508980		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
3UTR-intron	ENST00000395068	ENST00000369627		ChiTaRS3.1			BM545961	GRINA	chr8	145067410	-	SNX14	chr6	86303352	-
intron-3CDS	ENST00000452825	ENST00000426530		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000452825	ENST00000534775		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000452825	ENST00000326656		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000452825	ENST00000326674		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000452825	ENST00000527079		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3CDS	ENST00000375401	ENST00000426530		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375401	ENST00000534775		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375401	ENST00000326656		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375401	ENST00000326674		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375401	ENST00000527079		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3CDS	ENST00000404049	ENST00000426530		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000404049	ENST00000534775		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000404049	ENST00000326656		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000404049	ENST00000326674		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000404049	ENST00000527079		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3CDS	ENST00000375379	ENST00000426530		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375379	ENST00000534775		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375379	ENST00000326656		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375379	ENST00000326674		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375379	ENST00000527079		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3CDS	ENST00000375383	ENST00000426530		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375383	ENST00000534775		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375383	ENST00000326656		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375383	ENST00000326674		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000375383	ENST00000527079		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3CDS	ENST00000465402	ENST00000426530		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000465402	ENST00000534775		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000465402	ENST00000326656		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000465402	ENST00000326674		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
intron-3UTR	ENST00000465402	ENST00000527079		ChiTaRS3.1			AA434511	KDM5C	chrX	53221566	+	PTPMT1	chr11	47593062	+
3UTR-3UTR	ENST00000361970	ENST00000361970		ChiTaRS3.1			AA526801	CCDC152	chr5	42800406	-	CCDC152	chr5	42800502	+
3UTR-intron	ENST00000361970	ENST00000388827		ChiTaRS3.1			AA526801	CCDC152	chr5	42800406	-	CCDC152	chr5	42800502	+
3UTR-3UTR	ENST00000388827	ENST00000361970		ChiTaRS3.1			AA526801	CCDC152	chr5	42800406	-	CCDC152	chr5	42800502	+
3UTR-intron	ENST00000388827	ENST00000388827		ChiTaRS3.1			AA526801	CCDC152	chr5	42800406	-	CCDC152	chr5	42800502	+
intron-3CDS	ENST00000379717	ENST00000515877		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000379717	ENST00000503738		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000379717	ENST00000458167		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000379717	ENST00000424214		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000379717	ENST00000407583		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000379717	ENST00000264718		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000379717	ENST00000610189		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3UTR	ENST00000379717	ENST00000461249		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000515877		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000503738		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000458167		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000424214		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000407583		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000264718		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000355467	ENST00000610189		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3UTR	ENST00000355467	ENST00000461249		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000515877		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000503738		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000458167		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000424214		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000407583		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000264718		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000494548	ENST00000610189		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3UTR	ENST00000494548	ENST00000461249		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000515877		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000503738		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000458167		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000424214		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000407583		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000264718		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000556601	ENST00000610189		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3UTR	ENST00000556601	ENST00000461249		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000515877		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000503738		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000458167		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000424214		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000407583		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000264718		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000416005	ENST00000610189		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3UTR	ENST00000416005	ENST00000461249		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000515877		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000503738		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000458167		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000424214		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000407583		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000264718		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3CDS	ENST00000413371	ENST00000610189		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-3UTR	ENST00000413371	ENST00000461249		ChiTaRS3.1			BE932181	ZNF512	chr2	27858101	+	GPN1	chr2	27862949	-
intron-intron	ENST00000580197	ENST00000394789		ChiTaRS3.1			AI970491	LINC00668	chr18	6925664	+	SLC9B1	chr4	103936016	+
intron-intron	ENST00000580197	ENST00000296422		ChiTaRS3.1			AI970491	LINC00668	chr18	6925664	+	SLC9B1	chr4	103936016	+
intron-intron	ENST00000580197	ENST00000512651		ChiTaRS3.1			AI970491	LINC00668	chr18	6925664	+	SLC9B1	chr4	103936016	+
intron-intron	ENST00000263805	ENST00000375400		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000263805	ENST00000375398		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000263805	ENST00000355867		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000263805	ENST00000535393		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000263805	ENST00000460007		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000263805	ENST00000538146		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565380	ENST00000375400		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565380	ENST00000375398		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565380	ENST00000355867		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565380	ENST00000535393		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565380	ENST00000460007		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565380	ENST00000538146		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565611	ENST00000375400		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565611	ENST00000375398		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565611	ENST00000355867		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565611	ENST00000535393		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565611	ENST00000460007		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565611	ENST00000538146		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565660	ENST00000375400		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565660	ENST00000375398		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565660	ENST00000355867		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565660	ENST00000535393		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565660	ENST00000460007		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
intron-intron	ENST00000565660	ENST00000538146		ChiTaRS3.1			BE003331	ZNF106	chr15	42706449	-	SVIL	chr10	29880086	+
3UTR-3UTR	ENST00000358015	ENST00000261507		ChiTaRS3.1			H25981	RAD23B	chr9	110093229	+	MSMO1	chr4	166263763	+
3UTR-3UTR	ENST00000358015	ENST00000393766		ChiTaRS3.1			H25981	RAD23B	chr9	110093229	+	MSMO1	chr4	166263763	+
3UTR-intron	ENST00000358015	ENST00000504317		ChiTaRS3.1			H25981	RAD23B	chr9	110093229	+	MSMO1	chr4	166263763	+
intron-3UTR	ENST00000416373	ENST00000261507		ChiTaRS3.1			H25981	RAD23B	chr9	110093229	+	MSMO1	chr4	166263763	+
intron-3UTR	ENST00000416373	ENST00000393766		ChiTaRS3.1			H25981	RAD23B	chr9	110093229	+	MSMO1	chr4	166263763	+
intron-intron	ENST00000416373	ENST00000504317		ChiTaRS3.1			H25981	RAD23B	chr9	110093229	+	MSMO1	chr4	166263763	+
intron-3UTR	ENST00000372524	ENST00000270642		ChiTaRS3.1			BM711641	ZNF503	chr10	77158319	+	IGLON5	chr19	51832239	-
intron-3UTR	ENST00000535216	ENST00000270642		ChiTaRS3.1			BM711641	ZNF503	chr10	77158319	+	IGLON5	chr19	51832239	-
Frame-shit	ENST00000418458	ENST00000418458		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
Frame-shit	ENST00000418458	ENST00000394799		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
5CDS-intron	ENST00000418458	ENST00000460073		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
Frame-shit	ENST00000394799	ENST00000418458		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
Frame-shit	ENST00000394799	ENST00000394799		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
5CDS-intron	ENST00000394799	ENST00000460073		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
intron-3CDS	ENST00000460073	ENST00000418458		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
intron-3CDS	ENST00000460073	ENST00000394799		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
intron-intron	ENST00000460073	ENST00000460073		ChiTaRS3.1			BQ929481	GNL3	chr3	52726908	-	GNL3	chr3	52726954	+
3UTR-intron	ENST00000375587	ENST00000466398		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375587	ENST00000410066		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375587	ENST00000336917		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375587	ENST00000409343		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375587	ENST00000409692		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375579	ENST00000466398		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375579	ENST00000410066		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375579	ENST00000336917		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375579	ENST00000409343		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375579	ENST00000409692		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375576	ENST00000466398		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375576	ENST00000410066		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375576	ENST00000336917		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375576	ENST00000409343		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
3UTR-intron	ENST00000375576	ENST00000409692		ChiTaRS3.1			AW082201	CENPP	chr9	95375698	+	ZNF385B	chr2	180609446	-
intron-3UTR	ENST00000296043	ENST00000296043		ChiTaRS3.1			BF001551	SHROOM3	chr4	77610673	-	SHROOM3	chr4	77700514	-
intron-intron	ENST00000296043	ENST00000473602		ChiTaRS3.1			BF001551	SHROOM3	chr4	77610673	-	SHROOM3	chr4	77700514	-
intron-3UTR	ENST00000473602	ENST00000296043		ChiTaRS3.1			BF001551	SHROOM3	chr4	77610673	-	SHROOM3	chr4	77700514	-
intron-intron	ENST00000473602	ENST00000473602		ChiTaRS3.1			BF001551	SHROOM3	chr4	77610673	-	SHROOM3	chr4	77700514	-
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911341	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911341	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911341	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911341	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000260665	ENST00000502271		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000260665	ENST00000504924		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000260665	ENST00000510591		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000260665	ENST00000507646		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409946	ENST00000502271		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409946	ENST00000504924		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409946	ENST00000510591		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409946	ENST00000507646		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409659	ENST00000502271		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409659	ENST00000504924		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409659	ENST00000510591		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000409659	ENST00000507646		ChiTaRS3.1			BE706701	LRPPRC	chr2	44117101	+	ARL15	chr5	53301202	+
intron-intron	ENST00000600603	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000600603	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000600603	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000600603	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000600603	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000600603	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000600603	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601638	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000221557	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000598325	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000391842	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000599732	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000600603		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000601638		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000221557		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000598325		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000391842		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000599732		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000601675	ENST00000601675		ChiTaRS3.1			BF994781	PTOV1	chr19	50358401	+	PTOV1	chr19	50358516	-
intron-intron	ENST00000378609	ENST00000304062		ChiTaRS3.1			CA434461	GNB1	chr1	1717033	+	CPLX1	chr4	784965	+
intron-intron	ENST00000378609	ENST00000505203		ChiTaRS3.1			CA434461	GNB1	chr1	1717033	+	CPLX1	chr4	784965	+
intron-intron	ENST00000472614	ENST00000304062		ChiTaRS3.1			CA434461	GNB1	chr1	1717033	+	CPLX1	chr4	784965	+
intron-intron	ENST00000472614	ENST00000505203		ChiTaRS3.1			CA434461	GNB1	chr1	1717033	+	CPLX1	chr4	784965	+
In-frame	ENST00000372836	ENST00000372836		ChiTaRS3.1			BG818861	CNPY3	chr6	42897333	-	CNPY3	chr6	42897414	+
Frame-shit	ENST00000372836	ENST00000394142		ChiTaRS3.1			BG818861	CNPY3	chr6	42897333	-	CNPY3	chr6	42897414	+
In-frame	ENST00000394142	ENST00000372836		ChiTaRS3.1			BG818861	CNPY3	chr6	42897333	-	CNPY3	chr6	42897414	+
Frame-shit	ENST00000394142	ENST00000394142		ChiTaRS3.1			BG818861	CNPY3	chr6	42897333	-	CNPY3	chr6	42897414	+
intron-intron	ENST00000334444	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000334444	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000334444	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000334444	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000334444	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000334444	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000334444	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000265586	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000492216	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000427120	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000392579	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000382494	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000334444		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000265586		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000492216		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000427120		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000392579		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000382494		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000446941	ENST00000446941		ChiTaRS3.1			BX108331	ABCC5	chr3	183695836	-	ABCC5	chr1	142862970	+
intron-intron	ENST00000215832	ENST00000526568		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000527979		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000533400		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000436863		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000393136		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000446369		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000353247		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000594519		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000598974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000415981		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000593315		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000525825		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000534497		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000531166		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000215832	ENST00000528974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000526568		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000527979		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000533400		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000436863		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000393136		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000446369		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000353247		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000594519		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000598974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000415981		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000593315		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000525825		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000534497		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000531166		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000398822	ENST00000528974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000526568		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000527979		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000533400		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000436863		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000393136		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000446369		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000353247		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000594519		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000598974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000415981		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000593315		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000525825		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000534497		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000531166		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000544786	ENST00000528974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000526568		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000527979		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000533400		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000436863		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000393136		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000446369		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000353247		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000594519		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000598974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000415981		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000593315		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000525825		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000534497		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000531166		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-intron	ENST00000491588	ENST00000528974		ChiTaRS3.1			AI394721	MAPK1	chr22	22221919	+	CASP1	chr11	104904966	-
intron-3UTR	ENST00000421367	ENST00000421367		ChiTaRS3.1			BY796221	ERLIN1	chr10	101910928	+	ERLIN1	chr10	101910881	-
intron-intron	ENST00000421367	ENST00000407654		ChiTaRS3.1			BY796221	ERLIN1	chr10	101910928	+	ERLIN1	chr10	101910881	-
intron-3UTR	ENST00000407654	ENST00000421367		ChiTaRS3.1			BY796221	ERLIN1	chr10	101910928	+	ERLIN1	chr10	101910881	-
intron-intron	ENST00000407654	ENST00000407654		ChiTaRS3.1			BY796221	ERLIN1	chr10	101910928	+	ERLIN1	chr10	101910881	-
3UTR-3UTR	ENST00000397195	ENST00000397195		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
3UTR-intron	ENST00000397195	ENST00000572915		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
3UTR-intron	ENST00000397195	ENST00000451360		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-3UTR	ENST00000572915	ENST00000397195		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-intron	ENST00000572915	ENST00000572915		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-intron	ENST00000572915	ENST00000451360		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-3UTR	ENST00000451360	ENST00000397195		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-intron	ENST00000451360	ENST00000572915		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-intron	ENST00000451360	ENST00000451360		ChiTaRS3.1			BM969831	PAFAH1B1	chr17	2588549	-	PAFAH1B1	chr17	2588476	+
intron-intron	ENST00000252032	ENST00000532481		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000527134		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000304716		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000526415		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000531855		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000393427		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000525409		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000533193		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000252032	ENST00000525034		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000532481		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000527134		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000304716		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000526415		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000531855		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000393427		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000525409		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000533193		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000453730	ENST00000525034		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000532481		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000527134		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000304716		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000526415		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000531855		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000393427		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000525409		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000533193		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-intron	ENST00000498079	ENST00000525034		ChiTaRS3.1			BM979761	C20orf194	chr20	3312588	-	AAMDC	chr11	77585844	-
intron-5UTR	ENST00000343638	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000343638	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000302904	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000527034	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000533177	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000436088	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000393606	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000529383	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000526094	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000343638		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000302904		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000527034		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000533177		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000436088		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000393606		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000529383		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000526094		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-5UTR	ENST00000537550	ENST00000537550		ChiTaRS3.1			X53461	UBTF	chr17	42298289	+	UBTF	chr17	42295664	-
intron-intron	ENST00000556679	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000437198		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000420015		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000341484		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000539279		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000566021		ChiTaRS3.1			AI207461	CFB	chr6	3252074	+	PARN	chr16	14565880	-
3UTR-3CDS	ENST00000578382	ENST00000261769		ChiTaRS3.1			AW361401	MYO15B	chr17	73621930	-	CDH1	chr16	68863573	-
3UTR-3CDS	ENST00000578382	ENST00000422392		ChiTaRS3.1			AW361401	MYO15B	chr17	73621930	-	CDH1	chr16	68863573	-
3UTR-3UTR	ENST00000578382	ENST00000562836		ChiTaRS3.1			AW361401	MYO15B	chr17	73621930	-	CDH1	chr16	68863573	-
intron-3CDS	ENST00000583560	ENST00000261769		ChiTaRS3.1			AW361401	MYO15B	chr17	73621930	-	CDH1	chr16	68863573	-
intron-3CDS	ENST00000583560	ENST00000422392		ChiTaRS3.1			AW361401	MYO15B	chr17	73621930	-	CDH1	chr16	68863573	-
intron-3UTR	ENST00000583560	ENST00000562836		ChiTaRS3.1			AW361401	MYO15B	chr17	73621930	-	CDH1	chr16	68863573	-
intron-3CDS	ENST00000371121	ENST00000371121		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371121	ENST00000371122		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371121	ENST00000371123		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-intron	ENST00000371121	ENST00000478420		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371122	ENST00000371121		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371122	ENST00000371122		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371122	ENST00000371123		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-intron	ENST00000371122	ENST00000478420		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371123	ENST00000371121		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371123	ENST00000371122		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000371123	ENST00000371123		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-intron	ENST00000371123	ENST00000478420		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000478420	ENST00000371121		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000478420	ENST00000371122		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-3CDS	ENST00000478420	ENST00000371123		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
intron-intron	ENST00000478420	ENST00000478420		ChiTaRS3.1			CK430391	SMARCA1	chrX	128599545	-	SMARCA1	chrX	128582301	+
3UTR-3UTR	ENST00000450849	ENST00000450849		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-intron	ENST00000450849	ENST00000301260		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-intron	ENST00000450849	ENST00000595916		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-3UTR	ENST00000450849	ENST00000398448		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-3UTR	ENST00000450849	ENST00000600960		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000301260	ENST00000450849		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000301260	ENST00000301260		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000301260	ENST00000595916		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000301260	ENST00000398448		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000301260	ENST00000600960		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000595916	ENST00000450849		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000595916	ENST00000301260		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000595916	ENST00000595916		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000595916	ENST00000398448		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000595916	ENST00000600960		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000398448	ENST00000450849		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000398448	ENST00000301260		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000398448	ENST00000595916		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000398448	ENST00000398448		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000398448	ENST00000600960		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000600960	ENST00000450849		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000600960	ENST00000301260		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000600960	ENST00000595916		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000600960	ENST00000398448		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000600960	ENST00000600960		ChiTaRS3.1			AX747461	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
5CDS-5UTR	ENST00000455789	ENST00000238855		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000455789	ENST00000422803		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000455789	ENST00000238856		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000455789	ENST00000409933		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000455789	ENST00000409183		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000455789	ENST00000487769		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000310015	ENST00000238855		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000310015	ENST00000422803		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000310015	ENST00000238856		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000310015	ENST00000409933		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000310015	ENST00000409183		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000310015	ENST00000487769		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000418194	ENST00000238855		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000418194	ENST00000422803		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-5UTR	ENST00000418194	ENST00000238856		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000418194	ENST00000409933		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000418194	ENST00000409183		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
5CDS-intron	ENST00000418194	ENST00000487769		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-5UTR	ENST00000483084	ENST00000238855		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-5UTR	ENST00000483084	ENST00000422803		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-5UTR	ENST00000483084	ENST00000238856		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-intron	ENST00000483084	ENST00000409933		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-intron	ENST00000483084	ENST00000409183		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-intron	ENST00000483084	ENST00000487769		ChiTaRS3.1			DB204441	SP3	chr2	174819598	-	AFTPH	chr2	64778574	+
intron-3CDS	ENST00000354484	ENST00000361204		ChiTaRS3.1			BQ332151	ADAMTSL2	chr9	136429079	-	SREBF2	chr22	42301515	+
intron-3UTR	ENST00000354484	ENST00000491541		ChiTaRS3.1			BQ332151	ADAMTSL2	chr9	136429079	-	SREBF2	chr22	42301515	+
intron-3CDS	ENST00000393061	ENST00000361204		ChiTaRS3.1			BQ332151	ADAMTSL2	chr9	136429079	-	SREBF2	chr22	42301515	+
intron-3UTR	ENST00000393061	ENST00000491541		ChiTaRS3.1			BQ332151	ADAMTSL2	chr9	136429079	-	SREBF2	chr22	42301515	+
intron-3CDS	ENST00000393060	ENST00000361204		ChiTaRS3.1			BQ332151	ADAMTSL2	chr9	136429079	-	SREBF2	chr22	42301515	+
intron-3UTR	ENST00000393060	ENST00000491541		ChiTaRS3.1			BQ332151	ADAMTSL2	chr9	136429079	-	SREBF2	chr22	42301515	+
intron-3CDS	ENST00000440768	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000440768	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000359197	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000359197	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000343574	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000343574	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000331340	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000331340	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000349824	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000349824	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000357364	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000357364	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000346667	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000346667	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000438033	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000438033	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000439701	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000439701	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000413698	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000413698	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000492782	ENST00000322644		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000492782	ENST00000572844		ChiTaRS3.1			BI061851	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000294008	ENST00000406775		ChiTaRS3.1			DB315791	SLX4	chr16	3631269	+	AUTS2	chr7	70200951	+
intron-intron	ENST00000294008	ENST00000342771		ChiTaRS3.1			DB315791	SLX4	chr16	3631269	+	AUTS2	chr7	70200951	+
intron-intron	ENST00000294008	ENST00000403018		ChiTaRS3.1			DB315791	SLX4	chr16	3631269	+	AUTS2	chr7	70200951	+
intron-intron	ENST00000294008	ENST00000489774		ChiTaRS3.1			DB315791	SLX4	chr16	3631269	+	AUTS2	chr7	70200951	+
intron-intron	ENST00000381967	ENST00000390237		ChiTaRS3.1			AA767671	PGM2	chr4	37856350	+	IGKC	chr2	89156679	+
intron-intron	ENST00000544359	ENST00000390237		ChiTaRS3.1			AA767671	PGM2	chr4	37856350	+	IGKC	chr2	89156679	+
intron-intron	ENST00000537241	ENST00000390237		ChiTaRS3.1			AA767671	PGM2	chr4	37856350	+	IGKC	chr2	89156679	+
intron-3CDS	ENST00000275036	ENST00000380122		ChiTaRS3.1			CN426991	HMGN3	chr16	72819099	+	TXLNG	chrX	16847746	+
intron-3CDS	ENST00000275036	ENST00000398155		ChiTaRS3.1			CN426991	HMGN3	chr16	72819099	+	TXLNG	chrX	16847746	+
intron-intron	ENST00000275036	ENST00000485153		ChiTaRS3.1			CN426991	HMGN3	chr16	72819099	+	TXLNG	chrX	16847746	+
intron-3CDS	ENST00000344726	ENST00000380122		ChiTaRS3.1			CN426991	HMGN3	chr16	72819099	+	TXLNG	chrX	16847746	+
intron-3CDS	ENST00000344726	ENST00000398155		ChiTaRS3.1			CN426991	HMGN3	chr16	72819099	+	TXLNG	chrX	16847746	+
intron-intron	ENST00000344726	ENST00000485153		ChiTaRS3.1			CN426991	HMGN3	chr16	72819099	+	TXLNG	chrX	16847746	+
Frame-shit	ENST00000373233	ENST00000373233		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000373233	ENST00000309279		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000373233	ENST00000373222		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
5CDS-intron	ENST00000373233	ENST00000480022		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000309279	ENST00000373233		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000309279	ENST00000309279		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000309279	ENST00000373222		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
5CDS-intron	ENST00000309279	ENST00000480022		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000373222	ENST00000373233		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000373222	ENST00000309279		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
Frame-shit	ENST00000373222	ENST00000373222		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
5CDS-intron	ENST00000373222	ENST00000480022		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
intron-3CDS	ENST00000480022	ENST00000373233		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
intron-3CDS	ENST00000480022	ENST00000309279		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
intron-3CDS	ENST00000480022	ENST00000373222		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
intron-intron	ENST00000480022	ENST00000480022		ChiTaRS3.1			DA120241	CHD6	chr20	40141485	-	CHD6	chr20	40162211	-
intron-intron	ENST00000342160	ENST00000342160		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000342160	ENST00000262854		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000342160	ENST00000474288		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000342160	ENST00000218328		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000262854	ENST00000342160		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000262854	ENST00000262854		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000262854	ENST00000474288		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000262854	ENST00000218328		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000474288	ENST00000342160		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000474288	ENST00000262854		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000474288	ENST00000474288		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000474288	ENST00000218328		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000218328	ENST00000342160		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000218328	ENST00000262854		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000218328	ENST00000474288		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000218328	ENST00000218328		ChiTaRS3.1			AW841891	HUWE1	chrX	53631359	+	HUWE1	chrX	53630604	+
intron-intron	ENST00000502271	ENST00000380737		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000502271	ENST00000315985		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000502271	ENST00000523473		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000504924	ENST00000380737		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000504924	ENST00000315985		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000504924	ENST00000523473		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000510591	ENST00000380737		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000510591	ENST00000315985		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000510591	ENST00000523473		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000507646	ENST00000380737		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000507646	ENST00000315985		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000507646	ENST00000523473		ChiTaRS3.1			AF130091	ARL15	chr5	53347054	+	PPP2R2A	chr8	25285773	+
intron-intron	ENST00000579433	ENST00000579433		ChiTaRS3.1			CN278541	MIR3134	chr9	114982812	+	MIR3134	chr9	114982758	-
3UTR-3UTR	ENST00000394670	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000394670	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000394670	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000394670	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000394670	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-3UTR	ENST00000394670	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000394670	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000321233	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000321233	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000321233	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000321233	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000321233	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000321233	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000321233	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000394673	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000394673	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000394673	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000394673	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000394673	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000394673	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000394673	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000341711	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000341711	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000341711	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000341711	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000341711	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000341711	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000341711	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000342555	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000342555	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000342555	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000342555	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000342555	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000342555	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000342555	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-3UTR	ENST00000577908	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000577908	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000577908	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000577908	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000577908	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-3UTR	ENST00000577908	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000577908	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000584416	ENST00000394670		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000584416	ENST00000321233		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000584416	ENST00000394673		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000584416	ENST00000341711		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000584416	ENST00000342555		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-3UTR	ENST00000584416	ENST00000577908		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
intron-intron	ENST00000584416	ENST00000584416		ChiTaRS3.1			CN266101	ZNF207	chr17	30706457	-	ZNF207	chr17	30706478	+
3UTR-intron	ENST00000297268	ENST00000334956		ChiTaRS3.1			N70631	COL1A2	chr7	94059902	-	PARVA	chr11	12553306	-
3UTR-intron	ENST00000297268	ENST00000539723		ChiTaRS3.1			N70631	COL1A2	chr7	94059902	-	PARVA	chr11	12553306	-
3UTR-intron	ENST00000297268	ENST00000550549		ChiTaRS3.1			N70631	COL1A2	chr7	94059902	-	PARVA	chr11	12553306	-
3UTR-intron	ENST00000297268	ENST00000538608		ChiTaRS3.1			N70631	COL1A2	chr7	94059902	-	PARVA	chr11	12553306	-
3UTR-intron	ENST00000297268	ENST00000526746		ChiTaRS3.1			N70631	COL1A2	chr7	94059902	-	PARVA	chr11	12553306	-
5CDS-intron	ENST00000538872	ENST00000557165		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000538872	ENST00000389879		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000538872	ENST00000555049		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000326261	ENST00000557165		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000326261	ENST00000389879		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000326261	ENST00000555049		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000382841	ENST00000557165		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000382841	ENST00000389879		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
5CDS-intron	ENST00000382841	ENST00000555049		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
3UTR-intron	ENST00000537151	ENST00000557165		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
3UTR-intron	ENST00000537151	ENST00000389879		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
3UTR-intron	ENST00000537151	ENST00000555049		ChiTaRS3.1			BQ343261	IQSEC3	chr12	280306	-	CCNK	chr14	99976463	-
intron-intron	ENST00000437198	ENST00000437198		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000420015		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000341484		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000539279		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000566021		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000437198		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000420015		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000341484		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000539279		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000566021		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000437198		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000420015		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000341484		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000539279		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000566021		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000437198		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000420015		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000341484		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000539279		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000566021		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000437198		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000420015		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000341484		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000539279		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000566021		ChiTaRS3.1			AW889901	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000520984	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520984	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520984	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520984	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000520984	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520984	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520984	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520984	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000311212	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000311212	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000519744	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519744	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000517844	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000517844	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000520347	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000520347	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000519882	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000519882	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000521272	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000521272	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000520984		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000311212		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000519744		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000517844		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-5UTR	ENST00000518336	ENST00000520347		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000519882		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000521272		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000518336	ENST00000518336		ChiTaRS3.1			BE155371	ZNF706	chr8	102217150	+	ZNF706	chr8	102217239	-
intron-intron	ENST00000248594	ENST00000244769		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000248594	ENST00000436367		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000248594	ENST00000467008		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000415482	ENST00000244769		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000415482	ENST00000436367		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000415482	ENST00000467008		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000435495	ENST00000244769		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000435495	ENST00000436367		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
intron-intron	ENST00000435495	ENST00000467008		ChiTaRS3.1			BF852951	PTPN12	chr7	77267599	-	ATXN1	chr6	16331091	-
3UTR-3UTR	ENST00000375095	ENST00000375095		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-intron	ENST00000375095	ENST00000314475		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000375095	ENST00000531346		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000375095	ENST00000529187		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
intron-3UTR	ENST00000314475	ENST00000375095		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
intron-intron	ENST00000314475	ENST00000314475		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
intron-3UTR	ENST00000314475	ENST00000531346		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
intron-3UTR	ENST00000314475	ENST00000529187		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000531346	ENST00000375095		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-intron	ENST00000531346	ENST00000314475		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000531346	ENST00000531346		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000531346	ENST00000529187		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000529187	ENST00000375095		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-intron	ENST00000529187	ENST00000314475		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000529187	ENST00000531346		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
3UTR-3UTR	ENST00000529187	ENST00000529187		ChiTaRS3.1			CA778381	TMEM136	chr11	120203573	-	TMEM136	chr11	120203659	+
intron-3UTR	ENST00000377799	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377799	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377766	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000412821	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000358282	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000351358	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000457442	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000452380	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000322191		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000342512		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000371774		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000307534		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000488990	ENST00000488482		ChiTaRS3.1			BF827371	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
Frame-shit	ENST00000431877	ENST00000431877		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000431877	ENST00000320370		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000431877	ENST00000409001		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000431877	ENST00000428267		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000431877	ENST00000409136		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000431877	ENST00000467172		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000320370	ENST00000431877		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000320370	ENST00000320370		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000320370	ENST00000409001		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000320370	ENST00000428267		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000320370	ENST00000409136		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000320370	ENST00000467172		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000409001	ENST00000431877		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000409001	ENST00000320370		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000409001	ENST00000409001		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000409001	ENST00000428267		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000409001	ENST00000409136		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000409001	ENST00000467172		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000428267	ENST00000431877		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000428267	ENST00000320370		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000428267	ENST00000409001		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
Frame-shit	ENST00000428267	ENST00000428267		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000428267	ENST00000409136		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000428267	ENST00000467172		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000409136	ENST00000431877		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000409136	ENST00000320370		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000409136	ENST00000409001		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000409136	ENST00000428267		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-intron	ENST00000409136	ENST00000409136		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-intron	ENST00000409136	ENST00000467172		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000467172	ENST00000431877		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000467172	ENST00000320370		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000467172	ENST00000409001		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-3CDS	ENST00000467172	ENST00000428267		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-intron	ENST00000467172	ENST00000409136		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
intron-intron	ENST00000467172	ENST00000467172		ChiTaRS3.1			AW842451	SSFA2	chr2	182766664	+	SSFA2	chr2	182766800	-
5CDS-intron	ENST00000605788	ENST00000502271		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000605788	ENST00000504924		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000605788	ENST00000510591		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000605788	ENST00000507646		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000405356	ENST00000502271		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000405356	ENST00000504924		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000405356	ENST00000510591		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000405356	ENST00000507646		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000603742	ENST00000502271		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000603742	ENST00000504924		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000603742	ENST00000510591		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000603742	ENST00000507646		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000488254	ENST00000502271		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000488254	ENST00000504924		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000488254	ENST00000510591		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
5CDS-intron	ENST00000488254	ENST00000507646		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000477977	ENST00000502271		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000477977	ENST00000504924		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000477977	ENST00000510591		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-intron	ENST00000477977	ENST00000507646		ChiTaRS3.1			BP225181	NOLC1	chr10	103916985	+	ARL15	chr5	53482872	+
intron-3UTR	ENST00000335670	ENST00000326003		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000335670	ENST00000597483		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000335670	ENST00000593997		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000335670	ENST00000595952		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000335670	ENST00000360617		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000309157	ENST00000326003		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000309157	ENST00000597483		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000309157	ENST00000593997		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000309157	ENST00000595952		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000309157	ENST00000360617		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000261523	ENST00000326003		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000261523	ENST00000597483		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000261523	ENST00000593997		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000261523	ENST00000595952		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000261523	ENST00000360617		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000449337	ENST00000326003		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000449337	ENST00000597483		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000449337	ENST00000593997		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000449337	ENST00000595952		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000449337	ENST00000360617		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000560004	ENST00000326003		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000560004	ENST00000597483		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000560004	ENST00000593997		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-intron	ENST00000560004	ENST00000595952		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3UTR	ENST00000560004	ENST00000360617		ChiTaRS3.1			BF858891	RORA	chr15	61371657	-	KLK3	chr19	51363778	-
intron-3CDS	ENST00000333486	ENST00000333486		ChiTaRS3.1			BE762551	UBA7	chr3	49846469	-	UBA7	chr3	49851003	-
intron-5UTR	ENST00000333486	ENST00000494212		ChiTaRS3.1			BE762551	UBA7	chr3	49846469	-	UBA7	chr3	49851003	-
intron-3CDS	ENST00000494212	ENST00000333486		ChiTaRS3.1			BE762551	UBA7	chr3	49846469	-	UBA7	chr3	49851003	-
intron-5UTR	ENST00000494212	ENST00000494212		ChiTaRS3.1			BE762551	UBA7	chr3	49846469	-	UBA7	chr3	49851003	-
intron-intron	ENST00000360359	ENST00000376462		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000481700		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000458595		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000376454		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000376452		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000430453		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000307544		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000396446		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000396445		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000360359	ENST00000376451		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000376462		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000481700		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000458595		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000376454		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000376452		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000430453		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000307544		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000396446		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000396445		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000535627	ENST00000376451		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000376462		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000481700		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000458595		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000376454		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000376452		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000430453		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000307544		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000396446		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000396445		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000470698	ENST00000376451		ChiTaRS3.1			BF755121	ANKS1A	chr6	35000983	+	KIAA1217	chr10	24756326	+
intron-intron	ENST00000539068	ENST00000415807		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000539068	ENST00000336824		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000539068	ENST00000416957		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000539068	ENST00000392699		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000539068	ENST00000421757		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000539068	ENST00000423424		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000539068	ENST00000476794		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000415807		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000336824		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000416957		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000392699		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000421757		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000423424		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000536438	ENST00000476794		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000415807		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000336824		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000416957		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000392699		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000421757		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000423424		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000357266	ENST00000476794		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000415807		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000336824		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000416957		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000392699		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000421757		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000423424		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000540787	ENST00000476794		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000415807		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000336824		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000416957		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000392699		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000421757		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000423424		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000542713	ENST00000476794		ChiTaRS3.1			BG002941	FKBP5	chr6	35639197	+	FNDC3B	chr3	172106338	+
intron-intron	ENST00000497517	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000497517	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000497517	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000539820	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000539820	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000539820	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000382269	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000382269	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000382269	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000349624	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000349624	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000349624	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000345913	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000345913	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000345913	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000346956	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000346956	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000346956	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000337415	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000337415	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-intron	ENST00000337415	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000329066	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000329066	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000329066	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000382201	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000382201	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000382201	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000382198	ENST00000262305		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000382198	ENST00000457159		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
5CDS-intron	ENST00000382198	ENST00000450428		ChiTaRS3.1			BI004881	TPO	chr2	1544462	-	RAB11FIP3	chr16	546204	-
intron-3CDS	ENST00000379933	ENST00000379933		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000379933	ENST00000379938		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000379933	ENST00000334984		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000379933	ENST00000349384		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000379938	ENST00000379933		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000379938	ENST00000379938		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000379938	ENST00000334984		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000379938	ENST00000349384		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000334984	ENST00000379933		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000334984	ENST00000379938		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000334984	ENST00000334984		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000334984	ENST00000349384		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000349384	ENST00000379933		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-3CDS	ENST00000349384	ENST00000379938		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000349384	ENST00000334984		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000349384	ENST00000349384		ChiTaRS3.1			BF845881	RREB1	chr6	7246437	-	RREB1	chr6	7246937	-
intron-intron	ENST00000380121	ENST00000378531		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000380121	ENST00000606372		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000380121	ENST00000378529		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000504114	ENST00000378531		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000504114	ENST00000606372		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000504114	ENST00000378529		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000357505	ENST00000378531		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000357505	ENST00000606372		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000357505	ENST00000378529		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000399396	ENST00000378531		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000399396	ENST00000606372		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000399396	ENST00000378529		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000446957	ENST00000378531		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000446957	ENST00000606372		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000446957	ENST00000378529		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000267068	ENST00000378531		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000267068	ENST00000606372		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-intron	ENST00000267068	ENST00000378529		ChiTaRS3.1			BX110301	N4BP2L2	chr13	33107872	-	MORN1	chr1	2294932	-
intron-3CDS	ENST00000332826	ENST00000332826		ChiTaRS3.1			CN361291	ANO9	chr11	418105	-	ANO9	chr11	418446	-
intron-intron	ENST00000356539	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000356539	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000470811	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000470811	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000477399	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000477399	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000489350	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000489350	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000491763	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000491763	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000498839	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000498839	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000483177	ENST00000335016		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
intron-intron	ENST00000483177	ENST00000502871		ChiTaRS3.1			AW836821	LEKR1	chr3	156677761	-	BMP2K	chr4	79828405	+
3UTR-3UTR	ENST00000313949	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000313949	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000313949	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000313949	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000313949	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000313949	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371098	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371098	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371098	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371098	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371098	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371075	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371075	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371075	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371075	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371075	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371100	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371100	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371100	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371100	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371100	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371099	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371099	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371099	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371099	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371099	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371102	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371102	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371102	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371102	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371102	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000464624	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000464624	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000464624	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000464624	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000464624	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000306120	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000306120	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000306120	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000306120	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000306120	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371095	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371095	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371095	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371095	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371095	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371085	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371085	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371085	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000371085	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000371085	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000354359	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000354359	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000354359	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000354359	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000354359	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000265620	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000265620	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000265620	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000265620	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000265620	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000306090	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000306090	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000306090	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-3UTR	ENST00000306090	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
3UTR-intron	ENST00000306090	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000313949		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371081	ENST00000371098		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000371075		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000371100		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371081	ENST00000371099		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000371102		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000464624		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371081	ENST00000306120		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000371095		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000371085		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000354359		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000265620		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000371081	ENST00000306090		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-intron	ENST00000371081	ENST00000371081		ChiTaRS3.1			BU960781	GNAS	chr20	57486024	-	GNAS	chr20	57486072	+
intron-3UTR	ENST00000361937	ENST00000255622		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-3UTR	ENST00000361937	ENST00000496514		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-intron	ENST00000361937	ENST00000429163		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-3UTR	ENST00000401393	ENST00000255622		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-3UTR	ENST00000401393	ENST00000496514		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-intron	ENST00000401393	ENST00000429163		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-3UTR	ENST00000561244	ENST00000255622		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-3UTR	ENST00000561244	ENST00000496514		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-intron	ENST00000561244	ENST00000429163		ChiTaRS3.1			BM725061	INO80	chr15	41291127	-	PDE6B	chr4	664297	+
intron-3UTR	ENST00000452400	ENST00000380752		ChiTaRS3.1			BG260721	NCOA2	chr8	71261230	-	SLC7A1	chr13	30083688	-
intron-intron	ENST00000452400	ENST00000473577		ChiTaRS3.1			BG260721	NCOA2	chr8	71261230	-	SLC7A1	chr13	30083688	-
intron-3UTR	ENST00000267974	ENST00000380752		ChiTaRS3.1			BG260721	NCOA2	chr8	71261230	-	SLC7A1	chr13	30083688	-
intron-intron	ENST00000267974	ENST00000473577		ChiTaRS3.1			BG260721	NCOA2	chr8	71261230	-	SLC7A1	chr13	30083688	-
intron-3UTR	ENST00000524223	ENST00000380752		ChiTaRS3.1			BG260721	NCOA2	chr8	71261230	-	SLC7A1	chr13	30083688	-
intron-intron	ENST00000524223	ENST00000473577		ChiTaRS3.1			BG260721	NCOA2	chr8	71261230	-	SLC7A1	chr13	30083688	-
intron-intron	ENST00000267339	ENST00000267339		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000267339	ENST00000375758		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000267339	ENST00000489973		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000267339	ENST00000310847		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000375758	ENST00000267339		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000375758	ENST00000375758		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000375758	ENST00000489973		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000375758	ENST00000310847		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000489973	ENST00000267339		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000489973	ENST00000375758		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000489973	ENST00000489973		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000489973	ENST00000310847		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000310847	ENST00000267339		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000310847	ENST00000375758		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000310847	ENST00000489973		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000310847	ENST00000310847		ChiTaRS3.1			BF885151	ANKRD10	chr13	111547864	+	ANKRD10	chr13	111547360	+
intron-intron	ENST00000324350	ENST00000263713		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000324350	ENST00000443902		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000324350	ENST00000331393		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000324350	ENST00000443124		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000324350	ENST00000452780		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000324350	ENST00000488691		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
3UTR-intron	ENST00000373191	ENST00000263713		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
3UTR-intron	ENST00000373191	ENST00000443902		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
3UTR-intron	ENST00000373191	ENST00000331393		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
3UTR-intron	ENST00000373191	ENST00000443124		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
3UTR-intron	ENST00000373191	ENST00000452780		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
3UTR-intron	ENST00000373191	ENST00000488691		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000397828	ENST00000263713		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000397828	ENST00000443902		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000397828	ENST00000331393		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000397828	ENST00000443124		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000397828	ENST00000452780		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000397828	ENST00000488691		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000246314	ENST00000263713		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000246314	ENST00000443902		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000246314	ENST00000331393		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000246314	ENST00000443124		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000246314	ENST00000452780		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000246314	ENST00000488691		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000471099	ENST00000263713		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000471099	ENST00000443902		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000471099	ENST00000331393		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000471099	ENST00000443124		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000471099	ENST00000452780		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000471099	ENST00000488691		ChiTaRS3.1			AL698341	AGO3	chr1	36522140	+	EPB41L5	chr2	120810587	+
intron-intron	ENST00000485752	ENST00000485752		ChiTaRS3.1			DN916171	RNF149	chr2	101902878	-	RNF149	chr2	101903523	-
intron-intron	ENST00000485752	ENST00000295317		ChiTaRS3.1			DN916171	RNF149	chr2	101902878	-	RNF149	chr2	101903523	-
intron-intron	ENST00000295317	ENST00000485752		ChiTaRS3.1			DN916171	RNF149	chr2	101902878	-	RNF149	chr2	101903523	-
intron-intron	ENST00000295317	ENST00000295317		ChiTaRS3.1			DN916171	RNF149	chr2	101902878	-	RNF149	chr2	101903523	-
intron-3UTR	ENST00000554438	ENST00000311160		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000554438	ENST00000355730		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000554438	ENST00000398879		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000554438	ENST00000442536		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000554438	ENST00000458317		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000554438	ENST00000474346		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000245448	ENST00000311160		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000245448	ENST00000355730		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000245448	ENST00000398879		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000245448	ENST00000442536		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000245448	ENST00000458317		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000245448	ENST00000474346		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000426751	ENST00000311160		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000426751	ENST00000355730		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000426751	ENST00000398879		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000426751	ENST00000442536		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000426751	ENST00000458317		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000426751	ENST00000474346		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000311459	ENST00000311160		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000311459	ENST00000355730		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000311459	ENST00000398879		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000311459	ENST00000442536		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000311459	ENST00000458317		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000311459	ENST00000474346		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000358473	ENST00000311160		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000358473	ENST00000355730		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-3UTR	ENST00000358473	ENST00000398879		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000358473	ENST00000442536		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000358473	ENST00000458317		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000358473	ENST00000474346		ChiTaRS3.1			AW840281	ATP5S	chr14	50801121	-	TNS3	chr7	47314978	+
intron-intron	ENST00000342247	ENST00000333891		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000342247	ENST00000423517		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000342247	ENST00000437081		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000342247	ENST00000426442		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400585	ENST00000333891		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400585	ENST00000423517		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400585	ENST00000437081		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400585	ENST00000426442		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000497534	ENST00000333891		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000497534	ENST00000423517		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000497534	ENST00000437081		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000497534	ENST00000426442		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400573	ENST00000333891		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400573	ENST00000423517		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400573	ENST00000437081		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000400573	ENST00000426442		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000262608	ENST00000333891		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000262608	ENST00000423517		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000262608	ENST00000437081		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-intron	ENST00000262608	ENST00000426442		ChiTaRS3.1			BF946621	CECR2	chr22	17908345	-	PCLO	chr7	82763566	+
intron-3UTR	ENST00000216237	ENST00000482108		ChiTaRS3.1			AV723591	L3MBTL2	chr22	41626132	-	PEG10	chr7	94298765	+
intron-intron	ENST00000216237	ENST00000488574		ChiTaRS3.1			AV723591	L3MBTL2	chr22	41626132	-	PEG10	chr7	94298765	+
intron-intron	ENST00000216237	ENST00000465184		ChiTaRS3.1			AV723591	L3MBTL2	chr22	41626132	-	PEG10	chr7	94298765	+
intron-3UTR	ENST00000489136	ENST00000482108		ChiTaRS3.1			AV723591	L3MBTL2	chr22	41626132	-	PEG10	chr7	94298765	+
intron-intron	ENST00000489136	ENST00000488574		ChiTaRS3.1			AV723591	L3MBTL2	chr22	41626132	-	PEG10	chr7	94298765	+
intron-intron	ENST00000489136	ENST00000465184		ChiTaRS3.1			AV723591	L3MBTL2	chr22	41626132	-	PEG10	chr7	94298765	+
3UTR-3UTR	ENST00000466801	ENST00000466801		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
3UTR-3UTR	ENST00000466801	ENST00000409321		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
3UTR-3UTR	ENST00000466801	ENST00000409115		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
3UTR-3UTR	ENST00000466801	ENST00000341369		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
3UTR-3UTR	ENST00000466801	ENST00000409683		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
3UTR-intron	ENST00000466801	ENST00000410064		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409321	ENST00000466801		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409321	ENST00000409321		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409321	ENST00000409115		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409321	ENST00000341369		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409321	ENST00000409683		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-intron	ENST00000409321	ENST00000410064		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409115	ENST00000466801		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409115	ENST00000409321		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409115	ENST00000409115		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409115	ENST00000341369		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409115	ENST00000409683		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-intron	ENST00000409115	ENST00000410064		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000341369	ENST00000466801		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000341369	ENST00000409321		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000341369	ENST00000409115		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000341369	ENST00000341369		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000341369	ENST00000409683		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-intron	ENST00000341369	ENST00000410064		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409683	ENST00000466801		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409683	ENST00000409321		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409683	ENST00000409115		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409683	ENST00000341369		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000409683	ENST00000409683		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-intron	ENST00000409683	ENST00000410064		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000410064	ENST00000466801		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000410064	ENST00000409321		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000410064	ENST00000409115		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000410064	ENST00000341369		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-3UTR	ENST00000410064	ENST00000409683		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
5CDS-intron	ENST00000410064	ENST00000410064		ChiTaRS3.1			BQ322331	PTMA	chr2	232576064	-	PTMA	chr2	232577619	-
Frame-shit	ENST00000378455	ENST00000254066		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
Frame-shit	ENST00000378455	ENST00000394089		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378455	ENST00000425707		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378455	ENST00000394086		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378455	ENST00000394081		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378455	ENST00000420042		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
Frame-shit	ENST00000342274	ENST00000254066		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
Frame-shit	ENST00000342274	ENST00000394089		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000342274	ENST00000425707		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000342274	ENST00000394086		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000342274	ENST00000394081		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000342274	ENST00000420042		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
Frame-shit	ENST00000378463	ENST00000254066		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
Frame-shit	ENST00000378463	ENST00000394089		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378463	ENST00000425707		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378463	ENST00000394086		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378463	ENST00000394081		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378463	ENST00000420042		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
In-frame	ENST00000397354	ENST00000254066		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
In-frame	ENST00000397354	ENST00000394089		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000397354	ENST00000425707		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000397354	ENST00000394086		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000397354	ENST00000394081		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000397354	ENST00000420042		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
In-frame	ENST00000378444	ENST00000254066		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
In-frame	ENST00000378444	ENST00000394089		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378444	ENST00000425707		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378444	ENST00000394086		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378444	ENST00000394081		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
5CDS-intron	ENST00000378444	ENST00000420042		ChiTaRS3.1			HM597846	BCOR	chrX	39914621	-	RARA	chr17	38504566	+
intron-3UTR	ENST00000373865	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373855	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000238341	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373850	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373847	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000373845	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000373844	ENST00000534336		ChiTaRS3.1			DW435781	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3CDS	ENST00000394456	ENST00000451292		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000394456	ENST00000377797		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000394456	ENST00000445265		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000394456	ENST00000323668		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000394456	ENST00000439160		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000394456	ENST00000394269		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000394456	ENST00000504761		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000394456	ENST00000513346		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000394456	ENST00000506063		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000429701	ENST00000451292		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000429701	ENST00000377797		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000429701	ENST00000445265		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000429701	ENST00000323668		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3CDS	ENST00000429701	ENST00000439160		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000429701	ENST00000394269		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000429701	ENST00000504761		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000429701	ENST00000513346		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-intron	ENST00000429701	ENST00000506063		ChiTaRS3.1			BF799171	GTF2F1	chr19	6381843	+	TCOF1	chr5	149778001	-
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF912031	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF912031	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF912031	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF912031	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000380518	ENST00000374379		ChiTaRS3.1			BF054971	COL2A1	chr12	48367016	+	CLIC4	chr1	25168268	-
intron-intron	ENST00000380518	ENST00000497755		ChiTaRS3.1			BF054971	COL2A1	chr12	48367016	+	CLIC4	chr1	25168268	-
intron-3UTR	ENST00000493991	ENST00000374379		ChiTaRS3.1			BF054971	COL2A1	chr12	48367016	+	CLIC4	chr1	25168268	-
intron-intron	ENST00000493991	ENST00000497755		ChiTaRS3.1			BF054971	COL2A1	chr12	48367016	+	CLIC4	chr1	25168268	-
intron-3UTR	ENST00000337299	ENST00000374379		ChiTaRS3.1			BF054971	COL2A1	chr12	48367016	+	CLIC4	chr1	25168268	-
intron-intron	ENST00000337299	ENST00000497755		ChiTaRS3.1			BF054971	COL2A1	chr12	48367016	+	CLIC4	chr1	25168268	-
intron-intron	ENST00000221485	ENST00000476844		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000221485	ENST00000492590		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000221485	ENST00000466788		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000221485	ENST00000468189		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000221485	ENST00000341848		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000543531	ENST00000476844		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000543531	ENST00000492590		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000543531	ENST00000466788		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000543531	ENST00000468189		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000543531	ENST00000341848		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000600601	ENST00000476844		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000600601	ENST00000492590		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000600601	ENST00000466788		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000600601	ENST00000468189		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000600601	ENST00000341848		ChiTaRS3.1			BU726961	SLC17A7	chr19	49932736	+	FHIT	chr3	60091727	-
intron-intron	ENST00000305264	ENST00000366978		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000305264	ENST00000366977		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000305264	ENST00000422588		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000305264	ENST00000366975		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000305264	ENST00000366976		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000305264	ENST00000473995		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000469207	ENST00000366978		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000469207	ENST00000366977		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000469207	ENST00000422588		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000469207	ENST00000366975		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000469207	ENST00000366976		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-intron	ENST00000469207	ENST00000473995		ChiTaRS3.1			BF871741	HDAC3	chr5	141005639	+	NSL1	chr1	212923269	-
intron-3CDS	ENST00000317775	ENST00000362042		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000317775	ENST00000585291		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000317775	ENST00000357480		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000317775	ENST00000361665		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000317775	ENST00000579481		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000317775	ENST00000582155		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000317775	ENST00000583378		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000317775	ENST00000536222		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000344089	ENST00000362042		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000344089	ENST00000585291		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000344089	ENST00000357480		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000344089	ENST00000361665		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000344089	ENST00000579481		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000344089	ENST00000582155		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000344089	ENST00000583378		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000344089	ENST00000536222		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000338101	ENST00000362042		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000338101	ENST00000585291		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000338101	ENST00000357480		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000338101	ENST00000361665		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000338101	ENST00000579481		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000338101	ENST00000582155		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000338101	ENST00000583378		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000338101	ENST00000536222		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000549189	ENST00000362042		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000549189	ENST00000585291		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000549189	ENST00000357480		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3CDS	ENST00000549189	ENST00000361665		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000549189	ENST00000579481		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000549189	ENST00000582155		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000549189	ENST00000583378		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-intron	ENST00000549189	ENST00000536222		ChiTaRS3.1			BF930971	NOS1	chr12	117649500	+	NFE2L1	chr17	46134731	+
intron-3UTR	ENST00000353331	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000353331	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000353331	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000353331	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000353331	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000353331	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000353331	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000353331	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000531224	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000531224	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000531224	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000531224	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000531224	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000531224	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000531224	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000531224	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000527536	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000527536	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000527536	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527536	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527536	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527536	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527536	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527536	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000530767	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000530767	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000530767	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000530767	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000530767	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000530767	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000530767	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000530767	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000527759	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000527759	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000527759	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527759	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527759	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527759	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527759	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000527759	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000031135	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000031135	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000031135	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000031135	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000031135	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000031135	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000031135	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000031135	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000529917	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000529917	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000529917	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000529917	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000529917	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000529917	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000529917	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000529917	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000392348	ENST00000353331		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000392348	ENST00000531224		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000392348	ENST00000527536		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000392348	ENST00000530767		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000392348	ENST00000527759		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000392348	ENST00000031135		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000392348	ENST00000529917		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-intron	ENST00000392348	ENST00000392348		ChiTaRS3.1			BI090711	BCLAF1	chr6	136580812	+	BCLAF1	chr6	136580285	-
intron-3UTR	ENST00000487159	ENST00000395319		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000487159	ENST00000395321		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000487159	ENST00000226253		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000327628	ENST00000395319		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000327628	ENST00000395321		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000327628	ENST00000226253		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000449246	ENST00000395319		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000449246	ENST00000395321		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000449246	ENST00000226253		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000341421	ENST00000395319		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000341421	ENST00000395321		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000341421	ENST00000226253		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000396175	ENST00000395319		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000396175	ENST00000395321		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-3UTR	ENST00000396175	ENST00000226253		ChiTaRS3.1			BE070871	TRAK1	chr3	42245761	+	ALDOC	chr17	26900430	-
intron-intron	ENST00000344771	ENST00000358495		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000430095		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000539046		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000536177		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000544742		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000541619		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000535376		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000344771	ENST00000545564		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000358495		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000430095		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000539046		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000536177		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000544742		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000541619		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000535376		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000395059	ENST00000545564		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000358495		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000430095		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000539046		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000536177		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000544742		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000541619		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000535376		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-intron	ENST00000262518	ENST00000545564		ChiTaRS3.1			BG958211	SRCAP	chr16	30722612	+	RAD52	chr12	1055262	-
intron-5UTR	ENST00000396299	ENST00000377795		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396299	ENST00000353334		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396299	ENST00000524315		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396299	ENST00000009530		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000357727	ENST00000377795		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000357727	ENST00000353334		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000357727	ENST00000524315		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000357727	ENST00000009530		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396300	ENST00000377795		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396300	ENST00000353334		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396300	ENST00000524315		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396300	ENST00000009530		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000409603	ENST00000377795		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000409603	ENST00000353334		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000409603	ENST00000524315		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000409603	ENST00000009530		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396298	ENST00000377795		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396298	ENST00000353334		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396298	ENST00000524315		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000396298	ENST00000009530		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000482692	ENST00000377795		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000482692	ENST00000353334		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000482692	ENST00000524315		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-5UTR	ENST00000482692	ENST00000009530		ChiTaRS3.1			DA981541	CREB5	chr7	28849918	+	CD74	chr5	149792314	-
intron-intron	ENST00000298310	ENST00000566780		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000406884		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000539474		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000402655		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000408984		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000355860		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000565791		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000569818		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000566780		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000406884		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000539474		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000402655		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000408984		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000355860		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000565791		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000569818		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000566780		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000406884		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000539474		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000402655		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000408984		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000355860		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000565791		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000569818		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000566780		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000406884		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000539474		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000402655		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000408984		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000355860		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000565791		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000569818		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000566780		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000406884		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000539474		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000402655		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000408984		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000355860		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000565791		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000569818		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000566780		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000406884		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000539474		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000402655		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000408984		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000355860		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000565791		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000569818		ChiTaRS3.1			BX092681	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-3CDS	ENST00000366595	ENST00000366595		ChiTaRS3.1			AL710721	NID1	chr1	236143247	+	NID1	chr1	236154339	-
intron-3CDS	ENST00000366595	ENST00000264187		ChiTaRS3.1			AL710721	NID1	chr1	236143247	+	NID1	chr1	236154339	-
intron-3CDS	ENST00000264187	ENST00000366595		ChiTaRS3.1			AL710721	NID1	chr1	236143247	+	NID1	chr1	236154339	-
intron-3CDS	ENST00000264187	ENST00000264187		ChiTaRS3.1			AL710721	NID1	chr1	236143247	+	NID1	chr1	236154339	-
intron-intron	ENST00000296658	ENST00000368073		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000296658	ENST00000326837		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000296658	ENST00000368074		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000296658	ENST00000608310		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000296658	ENST00000556710		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000296658	ENST00000610139		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000296658	ENST00000475733		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000368073		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000326837		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000368074		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000608310		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000556710		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000610139		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000510532	ENST00000475733		ChiTaRS3.1			AA421821	CMBL	chr5	10279705	+	DCAF8	chr1	160227536	-
intron-intron	ENST00000350026	ENST00000350026		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000346085		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000367148		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000275248		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000478761		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000350026		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000346085		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000367148		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000275248		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000478761		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000350026		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000346085		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000367148		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000275248		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000478761		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000350026		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000346085		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000367148		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000275248		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000478761		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000350026		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000346085		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000367148		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000275248		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000478761		ChiTaRS3.1			BI000771	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000430948	ENST00000498829		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000430948	ENST00000400023		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000430948	ENST00000405854		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000430948	ENST00000444628		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000535378	ENST00000498829		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000535378	ENST00000400023		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000535378	ENST00000405854		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000535378	ENST00000444628		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000537886	ENST00000498829		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000537886	ENST00000400023		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000537886	ENST00000405854		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000537886	ENST00000444628		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000378214	ENST00000498829		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000378214	ENST00000400023		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000378214	ENST00000405854		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000378214	ENST00000444628		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000543707	ENST00000498829		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000543707	ENST00000400023		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000543707	ENST00000405854		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
intron-intron	ENST00000543707	ENST00000444628		ChiTaRS3.1			BF848351	KIAA0319	chr6	24552739	-	C22orf34	chr22	49941483	+
5CDS-intron	ENST00000406697	ENST00000442283		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000318218		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000522463		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000521420		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000347377		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000377576		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000541131		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000435847		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000406697	ENST00000520960		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000442283		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000318218		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000522463		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000521420		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000347377		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000377576		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000541131		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000435847		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000328916	ENST00000520960		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000442283		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000318218		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000522463		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000521420		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000347377		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000377576		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000541131		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000435847		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5CDS-intron	ENST00000360817	ENST00000520960		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000442283		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000318218		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000522463		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000521420		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000347377		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000377576		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000541131		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000435847		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
5UTR-intron	ENST00000402681	ENST00000520960		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000442283		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000318218		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000522463		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000521420		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000347377		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000377576		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000541131		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000435847		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-intron	ENST00000495061	ENST00000520960		ChiTaRS3.1			BF126521	C1S	chr12	7170371	+	CYFIP2	chr5	156755265	+
intron-3CDS	ENST00000513454	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000513454		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000311337		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000458112		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000500692		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000508177		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000503794		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000542860		ChiTaRS3.1			BU619601	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-intron	ENST00000407418	ENST00000550418		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000553186		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000547372		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000422070		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000535565		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000547427		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000552089		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000547338		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000436368		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000311745		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000355637		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000407418	ENST00000340209		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000550418		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000553186		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000547372		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000422070		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000535565		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000547427		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000552089		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000547338		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000436368		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000311745		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000355637		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000216083	ENST00000340209		ChiTaRS3.1			BI016311	CBX6	chr22	39260264	-	RBFOX1	chr16	6542066	-
intron-intron	ENST00000515852	ENST00000515852		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000515852	ENST00000506817		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000515852	ENST00000379982		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000515852	ENST00000504179		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000506817	ENST00000515852		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000506817	ENST00000506817		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000506817	ENST00000379982		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000506817	ENST00000504179		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
5CDS-intron	ENST00000379982	ENST00000515852		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
5CDS-intron	ENST00000379982	ENST00000506817		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
5CDS-intron	ENST00000379982	ENST00000379982		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
5CDS-intron	ENST00000379982	ENST00000504179		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000504179	ENST00000515852		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000504179	ENST00000506817		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000504179	ENST00000379982		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
intron-intron	ENST00000504179	ENST00000504179		ChiTaRS3.1			BF986091	RHOBTB3	chr5	95091233	+	RHOBTB3	chr5	95091332	-
3UTR-intron	ENST00000326003	ENST00000324631		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000377328		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000352115		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000282343		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000377331		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000396576		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000377319		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000377329		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000377315		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
3UTR-intron	ENST00000326003	ENST00000467034		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000324631		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000377328		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000352115		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000282343		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000377331		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000396576		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000377319		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000377329		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000377315		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000597483	ENST00000467034		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000324631		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000377328		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000352115		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000282343		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000377331		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000396576		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000377319		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000377329		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000377315		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000593997	ENST00000467034		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000324631		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000377328		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000352115		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000282343		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000377331		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000396576		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000377319		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000377329		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000377315		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000595952	ENST00000467034		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000324631		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000377328		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000352115		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000282343		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000377331		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000396576		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000377319		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000377329		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000377315		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000360617	ENST00000467034		ChiTaRS3.1			BF222031	KLK3	chr19	51363849	-	CACNB2	chr10	18484156	-
intron-intron	ENST00000330909	ENST00000379561		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000330909	ENST00000473775		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000402939	ENST00000379561		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000402939	ENST00000473775		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000483466	ENST00000379561		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000483466	ENST00000473775		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000497477	ENST00000379561		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000497477	ENST00000473775		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000470990	ENST00000379561		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000470990	ENST00000473775		ChiTaRS3.1			AK022351	MAGI1	chr3	65394441	-	FOXO1	chr13	41171344	-
intron-intron	ENST00000377403	ENST00000544305		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374630		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000400191		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374632		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374627		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000465676		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000544305		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374630		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000400191		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374632		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374627		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000465676		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000544305		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374630		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000400191		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374632		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374627		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000465676		ChiTaRS3.1			BF738621	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
5CDS-intron	ENST00000397256	ENST00000504801		ChiTaRS3.1			BE837601	ARPC4-TTLL3	chr3	9870721	+	GRIA2	chr4	158231527	-
5CDS-intron	ENST00000397256	ENST00000507898		ChiTaRS3.1			BE837601	ARPC4-TTLL3	chr3	9870721	+	GRIA2	chr4	158231527	-
5CDS-intron	ENST00000397256	ENST00000393815		ChiTaRS3.1			BE837601	ARPC4-TTLL3	chr3	9870721	+	GRIA2	chr4	158231527	-
5CDS-intron	ENST00000397256	ENST00000296526		ChiTaRS3.1			BE837601	ARPC4-TTLL3	chr3	9870721	+	GRIA2	chr4	158231527	-
5CDS-intron	ENST00000397256	ENST00000264426		ChiTaRS3.1			BE837601	ARPC4-TTLL3	chr3	9870721	+	GRIA2	chr4	158231527	-
5CDS-intron	ENST00000397256	ENST00000449365		ChiTaRS3.1			BE837601	ARPC4-TTLL3	chr3	9870721	+	GRIA2	chr4	158231527	-
intron-intron	ENST00000390394	ENST00000299381		ChiTaRS3.1			AW899391	TRBV20-1	chr16	2011259	+	ANAPC16	chr10	73831934	-
intron-intron	ENST00000390394	ENST00000470481		ChiTaRS3.1			AW899391	TRBV20-1	chr16	2011259	+	ANAPC16	chr10	73831934	-
5CDS-intron	ENST00000327906	ENST00000327906		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
5CDS-intron	ENST00000327906	ENST00000482327		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
5CDS-intron	ENST00000327906	ENST00000347025		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
intron-intron	ENST00000482327	ENST00000327906		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
intron-intron	ENST00000482327	ENST00000482327		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
intron-intron	ENST00000482327	ENST00000347025		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
5CDS-intron	ENST00000347025	ENST00000327906		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
5CDS-intron	ENST00000347025	ENST00000482327		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
5CDS-intron	ENST00000347025	ENST00000347025		ChiTaRS3.1			AL137671	PHF7	chr3	52457299	+	PHF7	chr3	52456731	+
intron-intron	ENST00000340415	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000340415	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000402449	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000528438	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392615	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392614	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392613	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392612	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000437600		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000292538		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000393824		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000547394		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000360264		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000425244		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000292535		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000549414		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000556210		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000550008		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000546411		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
intron-intron	ENST00000392610	ENST00000560541		ChiTaRS3.1			AF461901	RAB37	chr17	72713168	-	CUX1	chr7	101804998	+
3UTR-intron	ENST00000359271	ENST00000416426		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
3UTR-intron	ENST00000359271	ENST00000284073		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
3UTR-intron	ENST00000359271	ENST00000322684		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
3UTR-intron	ENST00000359271	ENST00000442934		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
3UTR-intron	ENST00000359271	ENST00000579180		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
3UTR-intron	ENST00000359271	ENST00000579505		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000486000	ENST00000416426		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000486000	ENST00000284073		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000486000	ENST00000322684		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000486000	ENST00000442934		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000486000	ENST00000579180		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000486000	ENST00000579505		ChiTaRS3.1			AL449901	SLC2A10	chr20	45362628	+	MSI2	chr17	55661949	-
intron-intron	ENST00000296794	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296794	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000287898	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000545377	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513042	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000437974	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000426542	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000296799	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000513841	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000296794		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000287898		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000545377		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000513042		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000437974		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000426542		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000296799		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000513841		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000512883	ENST00000512883		ChiTaRS3.1			AA481731	ARHGEF28	chr5	73024248	-	ARHGEF28	chr5	73024334	+
intron-intron	ENST00000318217	ENST00000317173		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000441698		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000518255		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000521209		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000528246		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000382490		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000517594		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000317173		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000441698		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000518255		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000521209		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000528246		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000382490		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000517594		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000317173		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000441698		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000518255		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000521209		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000528246		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000382490		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000517594		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000317173		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000441698		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000518255		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000521209		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000528246		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000382490		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000517594		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000317173		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000441698		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000518255		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000521209		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000528246		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000382490		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000517594		ChiTaRS3.1			AA654941	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000355621	ENST00000222381		ChiTaRS3.1			BX485261	UBE2H	chr7	129502984	-	PON1	chr7	94929189	+
intron-intron	ENST00000355621	ENST00000542556		ChiTaRS3.1			BX485261	UBE2H	chr7	129502984	-	PON1	chr7	94929189	+
intron-intron	ENST00000473814	ENST00000222381		ChiTaRS3.1			BX485261	UBE2H	chr7	129502984	-	PON1	chr7	94929189	+
intron-intron	ENST00000473814	ENST00000542556		ChiTaRS3.1			BX485261	UBE2H	chr7	129502984	-	PON1	chr7	94929189	+
intron-3CDS	ENST00000318607	ENST00000360284		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000318607	ENST00000545748		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000318607	ENST00000550082		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000318607	ENST00000547206		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000318607	ENST00000243050		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000318607	ENST00000394825		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000318607	ENST00000394824		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000318607	ENST00000548232		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000519004	ENST00000360284		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000519004	ENST00000545748		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000519004	ENST00000550082		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519004	ENST00000547206		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519004	ENST00000243050		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519004	ENST00000394825		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519004	ENST00000394824		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519004	ENST00000548232		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000522387	ENST00000360284		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000522387	ENST00000545748		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000522387	ENST00000550082		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000522387	ENST00000547206		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000522387	ENST00000243050		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000522387	ENST00000394825		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000522387	ENST00000394824		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000522387	ENST00000548232		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000519596	ENST00000360284		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000519596	ENST00000545748		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-3CDS	ENST00000519596	ENST00000550082		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519596	ENST00000547206		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519596	ENST00000243050		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519596	ENST00000394825		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519596	ENST00000394824		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000519596	ENST00000548232		ChiTaRS3.1			BG928171	PABPC1	chr8	101733914	-	NR4A1	chr12	52451247	+
intron-intron	ENST00000579433	ENST00000579433		ChiTaRS3.1			BE709701	MIR3134	chr9	114981335	-	MIR3134	chr9	114986782	-
intron-intron	ENST00000366663	ENST00000393283		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000366663	ENST00000272454		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000366663	ENST00000016946		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000366663	ENST00000495582		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000470540	ENST00000393283		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000470540	ENST00000272454		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000470540	ENST00000016946		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000470540	ENST00000495582		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000427697	ENST00000393283		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000427697	ENST00000272454		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000427697	ENST00000016946		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000427697	ENST00000495582		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000523410	ENST00000393283		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000523410	ENST00000272454		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000523410	ENST00000016946		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-intron	ENST00000523410	ENST00000495582		ChiTaRS3.1			BP372051	C1orf198	chr1	230972873	-	RGPD5	chr2	113128412	-
intron-3UTR	ENST00000368830	ENST00000265678		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000368830	ENST00000510118		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000368830	ENST00000503859		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368830	ENST00000481261		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368830	ENST00000405189		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368830	ENST00000366863		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368830	ENST00000509742		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000467306	ENST00000265678		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000467306	ENST00000510118		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000467306	ENST00000503859		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000467306	ENST00000481261		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000467306	ENST00000405189		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000467306	ENST00000366863		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000467306	ENST00000509742		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000368829	ENST00000265678		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000368829	ENST00000510118		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-3UTR	ENST00000368829	ENST00000503859		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368829	ENST00000481261		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368829	ENST00000405189		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368829	ENST00000366863		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
intron-intron	ENST00000368829	ENST00000509742		ChiTaRS3.1			AI432441	MRPL9	chr1	151732422	+	RPS6KA2	chr6	166824834	-
5CDS-intron	ENST00000399598	ENST00000589935		ChiTaRS3.1			DA405521	UBXN2B	chr8	59329514	+	WDR7	chr18	54629652	+
5CDS-intron	ENST00000399598	ENST00000357574		ChiTaRS3.1			DA405521	UBXN2B	chr8	59329514	+	WDR7	chr18	54629652	+
5CDS-intron	ENST00000399598	ENST00000254442		ChiTaRS3.1			DA405521	UBXN2B	chr8	59329514	+	WDR7	chr18	54629652	+
3UTR-intron	ENST00000522978	ENST00000589935		ChiTaRS3.1			DA405521	UBXN2B	chr8	59329514	+	WDR7	chr18	54629652	+
3UTR-intron	ENST00000522978	ENST00000357574		ChiTaRS3.1			DA405521	UBXN2B	chr8	59329514	+	WDR7	chr18	54629652	+
3UTR-intron	ENST00000522978	ENST00000254442		ChiTaRS3.1			DA405521	UBXN2B	chr8	59329514	+	WDR7	chr18	54629652	+
intron-3UTR	ENST00000331134	ENST00000331134		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000331134	ENST00000374747		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000331134	ENST00000539314		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000331134	ENST00000572760		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000331134	ENST00000573876		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000331134	ENST00000574344		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-3UTR	ENST00000374747	ENST00000331134		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000374747	ENST00000374747		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000374747	ENST00000539314		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000374747	ENST00000572760		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000374747	ENST00000573876		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000374747	ENST00000574344		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-3UTR	ENST00000539314	ENST00000331134		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000539314	ENST00000374747		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000539314	ENST00000539314		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000539314	ENST00000572760		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000539314	ENST00000573876		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000539314	ENST00000574344		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-3UTR	ENST00000572760	ENST00000331134		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000572760	ENST00000374747		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000572760	ENST00000539314		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000572760	ENST00000572760		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000572760	ENST00000573876		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000572760	ENST00000574344		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-3UTR	ENST00000573876	ENST00000331134		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000573876	ENST00000374747		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000573876	ENST00000539314		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000573876	ENST00000572760		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000573876	ENST00000573876		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000573876	ENST00000574344		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-3UTR	ENST00000574344	ENST00000331134		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000574344	ENST00000374747		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000574344	ENST00000539314		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000574344	ENST00000572760		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000574344	ENST00000573876		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-intron	ENST00000574344	ENST00000574344		ChiTaRS3.1			R45771	NPLOC4	chr17	79524111	-	NPLOC4	chr17	79524021	+
intron-3UTR	ENST00000256854	ENST00000256854		ChiTaRS3.1			BE867051	NARS	chr18	55268376	+	NARS	chr18	55268307	-
intron-intron	ENST00000256854	ENST00000423481		ChiTaRS3.1			BE867051	NARS	chr18	55268376	+	NARS	chr18	55268307	-
intron-3UTR	ENST00000423481	ENST00000256854		ChiTaRS3.1			BE867051	NARS	chr18	55268376	+	NARS	chr18	55268307	-
intron-intron	ENST00000423481	ENST00000423481		ChiTaRS3.1			BE867051	NARS	chr18	55268376	+	NARS	chr18	55268307	-
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582471	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000371586	ENST00000371586		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000371586	ENST00000284376		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000371586	ENST00000460261		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000371586	ENST00000438831		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000371586		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000284376		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000460261		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000438831		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000371586		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000284376		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000460261		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000438831		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000371586		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000284376		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000460261		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000438831		ChiTaRS3.1			BF885541	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-3UTR	ENST00000228705	ENST00000228705		ChiTaRS3.1			AU155021	PPM1H	chr12	63041592	-	PPM1H	chr12	63042214	+
intron-intron	ENST00000228705	ENST00000551214		ChiTaRS3.1			AU155021	PPM1H	chr12	63041592	-	PPM1H	chr12	63042214	+
intron-3UTR	ENST00000551214	ENST00000228705		ChiTaRS3.1			AU155021	PPM1H	chr12	63041592	-	PPM1H	chr12	63042214	+
intron-intron	ENST00000551214	ENST00000551214		ChiTaRS3.1			AU155021	PPM1H	chr12	63041592	-	PPM1H	chr12	63042214	+
intron-intron	ENST00000408442	ENST00000408442		ChiTaRS3.1			AA568101	MIR548G	chr3	99567026	-	MIR548G	chr3	99567103	+
5UTR-intron	ENST00000505459	ENST00000321990		ChiTaRS3.1			CR736801	SRP19	chr5	112197059	-	ATAD5	chr17	29194880	+
5UTR-intron	ENST00000282999	ENST00000321990		ChiTaRS3.1			CR736801	SRP19	chr5	112197059	-	ATAD5	chr17	29194880	+
5UTR-intron	ENST00000515463	ENST00000321990		ChiTaRS3.1			CR736801	SRP19	chr5	112197059	-	ATAD5	chr17	29194880	+
intron-intron	ENST00000488813	ENST00000584911		ChiTaRS3.1			BI059851	COA1	chr7	43679214	+	LINC00473	chr6	166345197	-
intron-intron	ENST00000395879	ENST00000584911		ChiTaRS3.1			BI059851	COA1	chr7	43679214	+	LINC00473	chr6	166345197	-
intron-intron	ENST00000395880	ENST00000584911		ChiTaRS3.1			BI059851	COA1	chr7	43679214	+	LINC00473	chr6	166345197	-
intron-intron	ENST00000310564	ENST00000584911		ChiTaRS3.1			BI059851	COA1	chr7	43679214	+	LINC00473	chr6	166345197	-
intron-intron	ENST00000223336	ENST00000584911		ChiTaRS3.1			BI059851	COA1	chr7	43679214	+	LINC00473	chr6	166345197	-
intron-intron	ENST00000296161	ENST00000296161		ChiTaRS3.1			BF916921	DTX3L	chr3	122289941	-	DTX3L	chr3	122289867	+
intron-intron	ENST00000296161	ENST00000383661		ChiTaRS3.1			BF916921	DTX3L	chr3	122289941	-	DTX3L	chr3	122289867	+
intron-intron	ENST00000383661	ENST00000296161		ChiTaRS3.1			BF916921	DTX3L	chr3	122289941	-	DTX3L	chr3	122289867	+
intron-intron	ENST00000383661	ENST00000383661		ChiTaRS3.1			BF916921	DTX3L	chr3	122289941	-	DTX3L	chr3	122289867	+
intron-3CDS	ENST00000300107	ENST00000300107		ChiTaRS3.1			BI911841	CLPX	chr15	65451087	+	CLPX	chr15	65451032	-
In-frame	ENST00000264228	ENST00000264228		ChiTaRS3.1			AI906091	SRD5A3	chr4	56225564	-	SRD5A3	chr4	56230397	-
5CDS-3UTR	ENST00000264228	ENST00000514398		ChiTaRS3.1			AI906091	SRD5A3	chr4	56225564	-	SRD5A3	chr4	56230397	-
3UTR-3CDS	ENST00000514398	ENST00000264228		ChiTaRS3.1			AI906091	SRD5A3	chr4	56225564	-	SRD5A3	chr4	56230397	-
3UTR-3UTR	ENST00000514398	ENST00000514398		ChiTaRS3.1			AI906091	SRD5A3	chr4	56225564	-	SRD5A3	chr4	56230397	-
intron-intron	ENST00000335295	ENST00000534797		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000397614		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000397615		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000397604		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000533410		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000438658		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000354420		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000356187		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-intron	ENST00000335295	ENST00000533592		ChiTaRS3.1			AJ710681	HBB	chr11	5246903	-	RNH1	chr11	494514	+
intron-5UTR	ENST00000317977	ENST00000404648		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000405164		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000336098		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000407946		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000404648		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000405164		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000336098		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000407946		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000404648		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000405164		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000336098		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000407946		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000404648		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000405164		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000336098		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000407946		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000404648		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000405164		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000336098		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000407946		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000404648		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000405164		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000336098		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000407946		ChiTaRS3.1			AV657521	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
3UTR-intron	ENST00000304800	ENST00000485046		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000304800	ENST00000376369		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000304800	ENST00000196061		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000563953	ENST00000485046		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000563953	ENST00000376369		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000563953	ENST00000196061		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000565201	ENST00000485046		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000565201	ENST00000376369		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000565201	ENST00000196061		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000563426	ENST00000485046		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000563426	ENST00000376369		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
3UTR-intron	ENST00000563426	ENST00000196061		ChiTaRS3.1			AW263711	TMEM208	chr16	67263075	-	PLOD1	chr1	12034787	-
intron-intron	ENST00000543491	ENST00000543491		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000543491	ENST00000509925		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000543491	ENST00000361762		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000509925	ENST00000543491		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000509925	ENST00000509925		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000509925	ENST00000361762		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000361762	ENST00000543491		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000361762	ENST00000509925		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-intron	ENST00000361762	ENST00000361762		ChiTaRS3.1			AA730641	PCDH7	chr4	31120165	+	PCDH7	chr4	31120027	-
intron-3UTR	ENST00000318789	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000318789	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318789	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000475937	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000475937	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000475937	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000493089	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000493089	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000493089	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000484350	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000484350	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000484350	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000318779	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000318779	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000318779	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000491238	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000491238	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000491238	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000498215	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000498215	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000498215	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000468577	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000468577	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000468577	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000472382	ENST00000318789		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3UTR	ENST00000472382	ENST00000475937		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000493089		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000484350		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000318779		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000491238		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000498215		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000468577		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-intron	ENST00000472382	ENST00000472382		ChiTaRS3.1			CF137681	FOXP1	chr3	71006219	+	FOXP1	chr3	71006644	-
intron-3CDS	ENST00000323853	ENST00000323853		ChiTaRS3.1			W22071	SNRNP200	chr2	96944375	+	SNRNP200	chr2	96943420	-
intron-intron	ENST00000323853	ENST00000349783		ChiTaRS3.1			W22071	SNRNP200	chr2	96944375	+	SNRNP200	chr2	96943420	-
intron-3CDS	ENST00000349783	ENST00000323853		ChiTaRS3.1			W22071	SNRNP200	chr2	96944375	+	SNRNP200	chr2	96943420	-
intron-intron	ENST00000349783	ENST00000349783		ChiTaRS3.1			W22071	SNRNP200	chr2	96944375	+	SNRNP200	chr2	96943420	-
intron-3CDS	ENST00000449934	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000449934	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000449934	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000449934	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000449934	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000417899	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000417899	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000417899	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000417899	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000417899	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000497496	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000497496	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000497496	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000497496	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000497496	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000427477	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000427477	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000427477	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000427477	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000427477	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000446505	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000446505	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000446505	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000446505	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000446505	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000547767	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000547767	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000547767	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000547767	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000547767	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000400322	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000400322	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000400322	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000400322	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000400322	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000493320	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000493320	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000493320	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000493320	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000493320	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000400325	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000400325	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000400325	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000400325	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000400325	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000547609	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000547609	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000547609	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000547609	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000547609	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000420259	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000420259	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000420259	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000420259	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000420259	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000468858	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000468858	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000468858	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000468858	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000468858	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000418465	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000418465	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000418465	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000418465	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000418465	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000432479	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000432479	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000432479	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000432479	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000432479	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000552236	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000552236	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000552236	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000552236	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000552236	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000438928	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000438928	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000438928	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000438928	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000438928	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000486844	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000486844	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000486844	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000486844	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000486844	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000415525	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000415525	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000415525	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000415525	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000415525	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000414473	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000414473	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000414473	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000414473	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000414473	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000546529	ENST00000435504		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3CDS	ENST00000546529	ENST00000336112		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000546529	ENST00000272341		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000546529	ENST00000404843		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-5UTR	ENST00000546529	ENST00000497092		ChiTaRS3.1			BF816101	MICA	chr6	2704138	-	ASXL2	chr2	25991640	-
intron-3UTR	ENST00000332644	ENST00000389682		ChiTaRS3.1			AW969521	TMPRSS11B	chr4	69107567	-	TSN	chr2	122524894	-
intron-intron	ENST00000332644	ENST00000498545		ChiTaRS3.1			AW969521	TMPRSS11B	chr4	69107567	-	TSN	chr2	122524894	-
intron-intron	ENST00000332644	ENST00000536142		ChiTaRS3.1			AW969521	TMPRSS11B	chr4	69107567	-	TSN	chr2	122524894	-
intron-intron	ENST00000332644	ENST00000409193		ChiTaRS3.1			AW969521	TMPRSS11B	chr4	69107567	-	TSN	chr2	122524894	-
intron-intron	ENST00000409581	ENST00000409581		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409581	ENST00000337386		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409581	ENST00000357215		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409581	ENST00000409641		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409581	ENST00000545490		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409581	ENST00000484774		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000337386	ENST00000409581		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000337386	ENST00000337386		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000337386	ENST00000357215		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000337386	ENST00000409641		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000337386	ENST00000545490		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000337386	ENST00000484774		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000357215	ENST00000409581		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000357215	ENST00000337386		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000357215	ENST00000357215		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000357215	ENST00000409641		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000357215	ENST00000545490		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000357215	ENST00000484774		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409641	ENST00000409581		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409641	ENST00000337386		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409641	ENST00000357215		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409641	ENST00000409641		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409641	ENST00000545490		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000409641	ENST00000484774		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000545490	ENST00000409581		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000545490	ENST00000337386		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000545490	ENST00000357215		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000545490	ENST00000409641		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000545490	ENST00000545490		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000545490	ENST00000484774		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000484774	ENST00000409581		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000484774	ENST00000337386		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000484774	ENST00000357215		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000484774	ENST00000409641		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000484774	ENST00000545490		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-intron	ENST00000484774	ENST00000484774		ChiTaRS3.1			BI027971	NAB1	chr2	191546266	+	NAB1	chr2	191545996	-
intron-3CDS	ENST00000297268	ENST00000400532		ChiTaRS3.1			BF932991	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3CDS	ENST00000297268	ENST00000480456		ChiTaRS3.1			BF932991	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3CDS	ENST00000297268	ENST00000312957		ChiTaRS3.1			BF932991	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3CDS	ENST00000297268	ENST00000425221		ChiTaRS3.1			BF932991	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-intron	ENST00000297268	ENST00000477351		ChiTaRS3.1			BF932991	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3UTR	ENST00000366844	ENST00000366844		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000366844	ENST00000366843		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000366844	ENST00000284563		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000366844	ENST00000391874		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-3UTR	ENST00000366843	ENST00000366844		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000366843	ENST00000366843		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000366843	ENST00000284563		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000366843	ENST00000391874		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-3UTR	ENST00000284563	ENST00000366844		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000284563	ENST00000366843		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000284563	ENST00000284563		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000284563	ENST00000391874		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-3UTR	ENST00000391874	ENST00000366844		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000391874	ENST00000366843		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000391874	ENST00000284563		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
intron-intron	ENST00000391874	ENST00000391874		ChiTaRS3.1			BM476111	ENAH	chr1	225677631	-	ENAH	chr1	225678899	-
3UTR-3UTR	ENST00000372409	ENST00000460265		ChiTaRS3.1			DB324921	PCIF1	chr20	44576522	-	LMNB1	chr5	126172353	-
3UTR-3UTR	ENST00000372409	ENST00000261366		ChiTaRS3.1			DB324921	PCIF1	chr20	44576522	-	LMNB1	chr5	126172353	-
3UTR-intron	ENST00000372409	ENST00000395354		ChiTaRS3.1			DB324921	PCIF1	chr20	44576522	-	LMNB1	chr5	126172353	-
3UTR-3UTR	ENST00000479348	ENST00000460265		ChiTaRS3.1			DB324921	PCIF1	chr20	44576522	-	LMNB1	chr5	126172353	-
3UTR-3UTR	ENST00000479348	ENST00000261366		ChiTaRS3.1			DB324921	PCIF1	chr20	44576522	-	LMNB1	chr5	126172353	-
3UTR-intron	ENST00000479348	ENST00000395354		ChiTaRS3.1			DB324921	PCIF1	chr20	44576522	-	LMNB1	chr5	126172353	-
In-frame	ENST00000332050	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332050	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332050	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332050	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332050	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000397938	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000397938	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000397938	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000397938	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000397938	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000406548	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000406548	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000406548	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000406548	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000406548	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000331029	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000331029	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000331029	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000331029	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000331029	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000414183	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000414183	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000414183	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000414183	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000414183	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000333395	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000333395	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000333395	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000333395	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000333395	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332035	ENST00000525560		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332035	ENST00000344954		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332035	ENST00000527786		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332035	ENST00000534087		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
In-frame	ENST00000332035	ENST00000281428		ChiTaRS3.1			JF290490	EWSR1	chr22	29683125	+	FLI1	chr11	128651853	+
5CDS-5UTR	ENST00000354725	ENST00000241651		ChiTaRS3.1			BF308961	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-5UTR	ENST00000467238	ENST00000241651		ChiTaRS3.1			BF308961	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
3UTR-3UTR	ENST00000308664	ENST00000308664		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-3UTR	ENST00000308664	ENST00000395494		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-intron	ENST00000308664	ENST00000539276		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-intron	ENST00000308664	ENST00000550248		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-intron	ENST00000308664	ENST00000552636		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-3UTR	ENST00000395494	ENST00000308664		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-3UTR	ENST00000395494	ENST00000395494		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-intron	ENST00000395494	ENST00000539276		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-intron	ENST00000395494	ENST00000550248		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
3UTR-intron	ENST00000395494	ENST00000552636		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3UTR	ENST00000539276	ENST00000308664		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3UTR	ENST00000539276	ENST00000395494		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000539276	ENST00000539276		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000539276	ENST00000550248		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000539276	ENST00000552636		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3UTR	ENST00000550248	ENST00000308664		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3UTR	ENST00000550248	ENST00000395494		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000550248	ENST00000539276		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000550248	ENST00000550248		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000550248	ENST00000552636		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3UTR	ENST00000552636	ENST00000308664		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3UTR	ENST00000552636	ENST00000395494		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000552636	ENST00000539276		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000552636	ENST00000550248		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-intron	ENST00000552636	ENST00000552636		ChiTaRS3.1			CB240681	ATP2A2	chr12	110788610	-	ATP2A2	chr12	110788539	+
intron-3CDS	ENST00000377110	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377110	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000377110	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377111	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377111	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000377111	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377105	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377105	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000377105	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377106	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377106	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000377106	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000360823	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000360823	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000360823	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000357533	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000357533	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000357533	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396285	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396285	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000396285	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000358082	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000358082	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000358082	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396292	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396292	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000396292	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000408909	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000408909	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000408909	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396280	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396280	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000396280	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000423814	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000423814	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000423814	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377101	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377101	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000377101	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396283	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000396283	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000396283	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000361823	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000361823	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000361823	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377097	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000377097	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000377097	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000437699	ENST00000268182		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000437699	ENST00000560738		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-intron	ENST00000437699	ENST00000560020		ChiTaRS3.1			BF351441	TRPM3	chr9	73399027	-	IQGAP1	chr15	91034673	-
intron-3CDS	ENST00000547302	ENST00000494664		ChiTaRS3.1			CA309751	RNASEK-C17orf49	chr17	6917677	-	TIMMDC1	chr3	119217723	-
intron-3CDS	ENST00000547302	ENST00000493694		ChiTaRS3.1			CA309751	RNASEK-C17orf49	chr17	6917677	-	TIMMDC1	chr3	119217723	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766271	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766271	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000354817	ENST00000354817		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000354817	ENST00000527202		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000354817	ENST00000532502		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000527202	ENST00000354817		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000527202	ENST00000527202		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000527202	ENST00000532502		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000532502	ENST00000354817		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000532502	ENST00000527202		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-intron	ENST00000532502	ENST00000532502		ChiTaRS3.1			AA862191	FAR1	chr11	13694626	+	FAR1	chr11	13694571	-
intron-3UTR	ENST00000326956	ENST00000373218		ChiTaRS3.1			AI738781	SSBP3	chr1	54692683	+	EIF4EBP2	chr10	72183278	-
intron-3UTR	ENST00000417664	ENST00000373218		ChiTaRS3.1			AI738781	SSBP3	chr1	54692683	+	EIF4EBP2	chr10	72183278	-
intron-3UTR	ENST00000371320	ENST00000373218		ChiTaRS3.1			AI738781	SSBP3	chr1	54692683	+	EIF4EBP2	chr10	72183278	-
intron-3UTR	ENST00000371319	ENST00000373218		ChiTaRS3.1			AI738781	SSBP3	chr1	54692683	+	EIF4EBP2	chr10	72183278	-
intron-3UTR	ENST00000357475	ENST00000373218		ChiTaRS3.1			AI738781	SSBP3	chr1	54692683	+	EIF4EBP2	chr10	72183278	-
intron-intron	ENST00000375640	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375640	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375640	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375641	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375641	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375641	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375638	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375638	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375638	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375635	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375635	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375635	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375639	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375639	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375639	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375642	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375642	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375642	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000395789	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000395789	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000395789	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375633	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375633	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000375633	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000395788	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000395788	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000395788	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000424962	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000424962	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000424962	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000456268	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000456268	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000456268	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000435938	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000435938	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000435938	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000433752	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000433752	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000433752	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000458514	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000458514	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000458514	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000549426	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000549426	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000549426	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550200	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550200	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550200	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000430690	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000430690	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000430690	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436558	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436558	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436558	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000456690	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000456690	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000456690	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000439907	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000439907	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000439907	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444974	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444974	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444974	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000439865	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000439865	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000439865	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000413638	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000413638	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000413638	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000423640	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000423640	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000423640	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444192	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444192	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444192	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000551797	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000551797	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000551797	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000552514	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000552514	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000552514	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000440361	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000440361	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000440361	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000443974	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000443974	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000443974	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000416886	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000416886	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000416886	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436205	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436205	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436205	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000450610	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000450610	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000450610	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000433697	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000433697	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000433697	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000414434	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000414434	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000414434	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000421605	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000421605	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000421605	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444331	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444331	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000444331	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000551957	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000551957	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000551957	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550492	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550492	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550492	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000423916	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000423916	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000423916	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436495	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436495	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000436495	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000426843	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000426843	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000426843	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000421039	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000421039	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000421039	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000414536	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000414536	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000414536	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400038	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400038	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400038	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383384	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383384	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383384	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383385	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383385	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383385	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383383	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383383	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000383383	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000547624	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000547624	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000547624	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550685	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550685	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000550685	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400037	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400037	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400037	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400035	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400035	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400035	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400034	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400034	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400034	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400039	ENST00000399537		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400039	ENST00000430969		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-intron	ENST00000400039	ENST00000399434		ChiTaRS3.1			BE147411	C6orf48	chr6	3097596	-	TNRC18	chr7	5441961	-
intron-3UTR	ENST00000509137	ENST00000509137		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000509137	ENST00000292853		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000509137	ENST00000600828		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000292853	ENST00000509137		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000292853	ENST00000292853		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000292853	ENST00000600828		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000600828	ENST00000509137		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000600828	ENST00000292853		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3UTR	ENST00000600828	ENST00000600828		ChiTaRS3.1			BQ225001	FBXO27	chr19	39515850	-	FBXO27	chr19	39515764	+
intron-3CDS	ENST00000369886	ENST00000369886		ChiTaRS3.1			T70951	SAMD10	chr20	62607213	+	SAMD10	chr20	62607075	-
intron-5UTR	ENST00000369886	ENST00000498830		ChiTaRS3.1			T70951	SAMD10	chr20	62607213	+	SAMD10	chr20	62607075	-
intron-3CDS	ENST00000498830	ENST00000369886		ChiTaRS3.1			T70951	SAMD10	chr20	62607213	+	SAMD10	chr20	62607075	-
intron-5UTR	ENST00000498830	ENST00000498830		ChiTaRS3.1			T70951	SAMD10	chr20	62607213	+	SAMD10	chr20	62607075	-
Frame-shit	ENST00000426496	ENST00000426496		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000426496	ENST00000392078		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000476522		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000367742		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000338920		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000392078	ENST00000426496		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000392078	ENST00000392078		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000476522		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000367742		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000338920		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3CDS	ENST00000476522	ENST00000426496		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3CDS	ENST00000476522	ENST00000392078		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000476522		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000367742		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000338920		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000367742	ENST00000426496		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000367742	ENST00000392078		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000476522		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000367742		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000338920		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000338920	ENST00000426496		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000338920	ENST00000392078		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000476522		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000367742		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000338920		ChiTaRS3.1			BE156211	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			BF356931	FNBP1	chr9	132672496	+	FNBP1	chr9	132672172	+
3UTR-3UTR	ENST00000373625	ENST00000373625		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
3UTR-intron	ENST00000373625	ENST00000537234		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
3UTR-intron	ENST00000373625	ENST00000469790		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
3UTR-intron	ENST00000373625	ENST00000545542		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-3UTR	ENST00000537234	ENST00000373625		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000537234	ENST00000537234		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000537234	ENST00000469790		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000537234	ENST00000545542		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-3UTR	ENST00000469790	ENST00000373625		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000469790	ENST00000537234		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000469790	ENST00000469790		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000469790	ENST00000545542		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-3UTR	ENST00000545542	ENST00000373625		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000545542	ENST00000537234		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000545542	ENST00000469790		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000545542	ENST00000545542		ChiTaRS3.1			BF996481	KPNA6	chr1	32639886	+	KPNA6	chr1	32640175	-
intron-intron	ENST00000559089	ENST00000322764		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000559089	ENST00000449423		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000559089	ENST00000392910		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000559089	ENST00000477373		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000502113	ENST00000322764		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000502113	ENST00000449423		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000502113	ENST00000392910		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000502113	ENST00000477373		ChiTaRS3.1			AA890191	UBAP1L	chr15	65385544	+	ZYX	chr7	143087463	+
intron-intron	ENST00000405592	ENST00000348405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000513858		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000395310		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000443462		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000509142		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000326950		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000432794		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000311785		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000448323		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000505472		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000500777		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000508502		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000355196		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000264405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000505984		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000508479		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405592	ENST00000436790		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000348405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000513858		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000395310		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000443462		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000509142		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000326950		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000432794		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000311785		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000448323		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000505472		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000500777		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000508502		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000355196		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000264405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000505984		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000508479		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406652	ENST00000436790		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000348405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000513858		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000395310		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000443462		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000509142		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000326950		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000432794		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000311785		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000448323		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000505472		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000500777		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000508502		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000355196		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000264405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000505984		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000508479		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000407270	ENST00000436790		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000348405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000513858		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000395310		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000443462		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000509142		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000326950		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000432794		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000311785		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000448323		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000505472		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000500777		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000508502		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000355196		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000264405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000505984		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000508479		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000406911	ENST00000436790		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000348405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000513858		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000395310		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000443462		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000509142		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000326950		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000432794		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000311785		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000448323		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000505472		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000500777		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000508502		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000355196		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000264405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000505984		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000508479		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000405094	ENST00000436790		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000348405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000513858		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000395310		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000443462		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000509142		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000326950		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000432794		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000311785		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000448323		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000505472		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000500777		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000508502		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000355196		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000264405		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000505984		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000508479		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
intron-intron	ENST00000472767	ENST00000436790		ChiTaRS3.1			CA419101	MTA3	chr2	42731318	-	SEC31A	chr4	83768137	+
3UTR-3CDS	ENST00000303375	ENST00000279550		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-3CDS	ENST00000303375	ENST00000228251		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-5UTR	ENST00000303375	ENST00000546164		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-3CDS	ENST00000446119	ENST00000279550		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-3CDS	ENST00000446119	ENST00000228251		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-5UTR	ENST00000446119	ENST00000546164		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-3CDS	ENST00000580916	ENST00000279550		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-3CDS	ENST00000580916	ENST00000228251		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-5UTR	ENST00000580916	ENST00000546164		ChiTaRS3.1			AF074691	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
In-frame	ENST00000299767	ENST00000299767		ChiTaRS3.1			BQ292081	HSP90B1	chr12	104336455	-	HSP90B1	chr12	104336314	+
intron-intron	ENST00000328252	ENST00000328252		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000328252	ENST00000534838		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000328252	ENST00000483254		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000534838	ENST00000328252		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000534838	ENST00000534838		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000534838	ENST00000483254		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000483254	ENST00000328252		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000483254	ENST00000534838		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
intron-intron	ENST00000483254	ENST00000483254		ChiTaRS3.1			BF994661	PAPPA	chr9	118970009	-	PAPPA	chr9	118970332	+
5CDS-3UTR	ENST00000404241	ENST00000264993		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000404241	ENST00000431519		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000404241	ENST00000508481		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-3UTR	ENST00000404241	ENST00000420115		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000404241	ENST00000511392		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000404241	ENST00000515421		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-3UTR	ENST00000337304	ENST00000264993		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000337304	ENST00000431519		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000337304	ENST00000508481		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-3UTR	ENST00000337304	ENST00000420115		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000337304	ENST00000511392		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000337304	ENST00000515421		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-3UTR	ENST00000396680	ENST00000264993		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000396680	ENST00000431519		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000396680	ENST00000508481		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-3UTR	ENST00000396680	ENST00000420115		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000396680	ENST00000511392		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
5CDS-intron	ENST00000396680	ENST00000515421		ChiTaRS3.1			BM842661	ATF4	chr22	39917501	+	CDV3	chr3	133308388	+
intron-intron	ENST00000434000	ENST00000434000		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000434000	ENST00000591680		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000434000	ENST00000586265		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000434000	ENST00000592154		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000434000	ENST00000588554		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000591680	ENST00000434000		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000591680	ENST00000591680		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000591680	ENST00000586265		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000591680	ENST00000592154		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000591680	ENST00000588554		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000586265	ENST00000434000		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000586265	ENST00000591680		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000586265	ENST00000586265		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000586265	ENST00000592154		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000586265	ENST00000588554		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000592154	ENST00000434000		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000592154	ENST00000591680		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000592154	ENST00000586265		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000592154	ENST00000592154		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000592154	ENST00000588554		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000588554	ENST00000434000		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000588554	ENST00000591680		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000588554	ENST00000586265		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000588554	ENST00000592154		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000588554	ENST00000588554		ChiTaRS3.1			AA505021	GPATCH8	chr17	42473477	+	GPATCH8	chr17	42473017	-
intron-intron	ENST00000440884	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000440884	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000416682	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000429436	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000303622	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000216288	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000553942	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000335102	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000342704		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000375279		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000344201		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000397798		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000346541		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000397800		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000492345		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000359606		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000491618		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000561071	ENST00000543126		ChiTaRS3.1			AW884581	MARK3	chr14	103920806	-	CBFA2T2	chr20	32152622	-
intron-intron	ENST00000254351	ENST00000394236		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000254351	ENST00000407433		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000381150	ENST00000394236		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000381150	ENST00000407433		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000403076	ENST00000394236		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000403076	ENST00000407433		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000482879	ENST00000394236		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-intron	ENST00000482879	ENST00000407433		ChiTaRS3.1			BE185151	SDC1	chr2	20402069	+	PROS1	chr3	93628822	+
intron-3UTR	ENST00000504926	ENST00000298249		ChiTaRS3.1			AA446881	ZNF608	chr5	123984778	+	REEP3	chr10	65383360	-
intron-3UTR	ENST00000504926	ENST00000373758		ChiTaRS3.1			AA446881	ZNF608	chr5	123984778	+	REEP3	chr10	65383360	-
intron-3UTR	ENST00000306315	ENST00000298249		ChiTaRS3.1			AA446881	ZNF608	chr5	123984778	+	REEP3	chr10	65383360	-
intron-3UTR	ENST00000306315	ENST00000373758		ChiTaRS3.1			AA446881	ZNF608	chr5	123984778	+	REEP3	chr10	65383360	-
intron-3UTR	ENST00000513985	ENST00000298249		ChiTaRS3.1			AA446881	ZNF608	chr5	123984778	+	REEP3	chr10	65383360	-
intron-3UTR	ENST00000513985	ENST00000373758		ChiTaRS3.1			AA446881	ZNF608	chr5	123984778	+	REEP3	chr10	65383360	-
intron-intron	ENST00000355621	ENST00000355621		ChiTaRS3.1			BE005761	UBE2H	chr7	129550474	+	UBE2H	chr7	129530699	-
intron-intron	ENST00000355621	ENST00000473814		ChiTaRS3.1			BE005761	UBE2H	chr7	129550474	+	UBE2H	chr7	129530699	-
intron-intron	ENST00000473814	ENST00000355621		ChiTaRS3.1			BE005761	UBE2H	chr7	129550474	+	UBE2H	chr7	129530699	-
intron-intron	ENST00000473814	ENST00000473814		ChiTaRS3.1			BE005761	UBE2H	chr7	129550474	+	UBE2H	chr7	129530699	-
3UTR-intron	ENST00000532219	ENST00000367178		ChiTaRS3.1			AA911801	ANKHD1-EIF4EBP3	chr5	139928855	-	SCAF8	chr6	155073360	-
3UTR-intron	ENST00000532219	ENST00000461219		ChiTaRS3.1			AA911801	ANKHD1-EIF4EBP3	chr5	139928855	-	SCAF8	chr6	155073360	-
3UTR-intron	ENST00000532219	ENST00000417268		ChiTaRS3.1			AA911801	ANKHD1-EIF4EBP3	chr5	139928855	-	SCAF8	chr6	155073360	-
3UTR-intron	ENST00000532219	ENST00000367186		ChiTaRS3.1			AA911801	ANKHD1-EIF4EBP3	chr5	139928855	-	SCAF8	chr6	155073360	-
intron-intron	ENST00000313833	ENST00000368655		ChiTaRS3.1			BF380111	FBXO34	chr14	55801960	+	GATAD2B	chr1	153893813	-
intron-intron	ENST00000555087	ENST00000368655		ChiTaRS3.1			BF380111	FBXO34	chr14	55801960	+	GATAD2B	chr1	153893813	-
intron-intron	ENST00000440021	ENST00000368655		ChiTaRS3.1			BF380111	FBXO34	chr14	55801960	+	GATAD2B	chr1	153893813	-
Frame-shit	ENST00000297268	ENST00000297268		ChiTaRS3.1			AA348171	COL1A2	chr7	94056998	-	COL1A2	chr7	94057060	+
intron-intron	ENST00000264645	ENST00000304457		ChiTaRS3.1			AW377331	CASC3	chr17	38323498	-	EXOSC10	chr1	11140175	+
intron-intron	ENST00000264645	ENST00000376936		ChiTaRS3.1			AW377331	CASC3	chr17	38323498	-	EXOSC10	chr1	11140175	+
intron-intron	ENST00000264645	ENST00000544779		ChiTaRS3.1			AW377331	CASC3	chr17	38323498	-	EXOSC10	chr1	11140175	+
intron-intron	ENST00000264645	ENST00000485606		ChiTaRS3.1			AW377331	CASC3	chr17	38323498	-	EXOSC10	chr1	11140175	+
intron-3CDS	ENST00000369046	ENST00000369046		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-intron	ENST00000369046	ENST00000467262		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-intron	ENST00000369046	ENST00000369044		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-3CDS	ENST00000467262	ENST00000369046		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-intron	ENST00000467262	ENST00000467262		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-intron	ENST00000467262	ENST00000369044		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-3CDS	ENST00000369044	ENST00000369046		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-intron	ENST00000369044	ENST00000467262		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-intron	ENST00000369044	ENST00000369044		ChiTaRS3.1			BE250091	QRSL1	chr6	107100343	-	QRSL1	chr6	107100378	+
intron-3UTR	ENST00000400324	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400324	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400324	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400324	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400324	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400324	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400324	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400330	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400330	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400330	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400330	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400330	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400330	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400330	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400319	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400319	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400319	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400319	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400319	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400319	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400319	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400320	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000400320	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400320	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400320	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400320	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400320	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000400320	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000377908	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000377908	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000377908	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000377908	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000377908	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000377908	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000377908	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000267215	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000267215	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000267215	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000267215	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000267215	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000267215	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000267215	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000465066	ENST00000400324		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-3UTR	ENST00000465066	ENST00000400330		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000465066	ENST00000400319		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000465066	ENST00000400320		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000465066	ENST00000377908		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000465066	ENST00000267215		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
intron-intron	ENST00000465066	ENST00000465066		ChiTaRS3.1			AA947531	DIAPH3	chr13	60240013	-	DIAPH3	chr13	60240106	+
5CDS-intron	ENST00000360472	ENST00000481781		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
5CDS-intron	ENST00000360472	ENST00000397270		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
5CDS-intron	ENST00000368077	ENST00000481781		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
5CDS-intron	ENST00000368077	ENST00000397270		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
5CDS-intron	ENST00000368076	ENST00000481781		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
5CDS-intron	ENST00000368076	ENST00000397270		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
3UTR-intron	ENST00000488858	ENST00000481781		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
3UTR-intron	ENST00000488858	ENST00000397270		ChiTaRS3.1			BQ366771	PEA15	chr1	160181347	-	INS-IGF2	chr11	2150913	-
In-frame	ENST00000377918	ENST00000377918		ChiTaRS3.1			N56191	PCDH17	chr13	58299323	-	PCDH17	chr13	58299136	+
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			BF592421	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000550831	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000550831	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000550831	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000550831	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000550831	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000550831	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000355445	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000355445	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000355445	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000355445	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000355445	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000355445	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000354825	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000354825	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000354825	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000354825	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000354825	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000354825	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000437003	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000437003	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000437003	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000437003	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000437003	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000437003	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552374	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552374	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000552374	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552374	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552374	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000552374	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000549537	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000549537	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000549537	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000549537	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000549537	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000549537	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552839	ENST00000340600		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552839	ENST00000549206		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000552839	ENST00000536696		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552839	ENST00000549122		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000552839	ENST00000548537		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-intron	ENST00000552839	ENST00000551556		ChiTaRS3.1			BF090991	TMEM116	chr12	112437928	+	SOCS2	chr12	93969446	-
intron-3UTR	ENST00000361475	ENST00000396821		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000361475	ENST00000444597		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000361475	ENST00000381633		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-intron	ENST00000361475	ENST00000432525		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000536701	ENST00000396821		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000536701	ENST00000444597		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000536701	ENST00000381633		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-intron	ENST00000536701	ENST00000432525		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000536724	ENST00000396821		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000536724	ENST00000444597		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000536724	ENST00000381633		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-intron	ENST00000536724	ENST00000432525		ChiTaRS3.1			BM990731	TGM2	chr20	36757136	+	DDX17	chr22	38879710	-
intron-3UTR	ENST00000502732	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000502732	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000502732	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000502732	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000502732	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000502732	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000502732	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000502732	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000502732	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000367623	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000367623	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000367623	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000367623	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000367623	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000367623	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000367623	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000367623	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000367623	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000507173	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000507173	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000507173	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000507173	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000507173	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000507173	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000507173	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000507173	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000507173	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000511413	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000511413	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000511413	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000511413	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000511413	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000511413	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000511413	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000511413	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000511413	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000392043	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000392043	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000392043	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000392043	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000392043	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000392043	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000392043	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000392043	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000392043	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000408940	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000408940	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000408940	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000408940	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000408940	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000408940	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000408940	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000408940	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000408940	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000344730	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000344730	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000344730	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000344730	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000344730	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000344730	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000344730	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000344730	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000344730	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000512653	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000512653	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000512653	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000512653	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000512653	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000512653	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000512653	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000512653	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000512653	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000504405	ENST00000502732		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000504405	ENST00000367623		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000504405	ENST00000507173		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000504405	ENST00000511413		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000504405	ENST00000392043		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000504405	ENST00000408940		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3UTR	ENST00000504405	ENST00000344730		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000504405	ENST00000512653		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-intron	ENST00000504405	ENST00000504405		ChiTaRS3.1			BG178591	ABL2	chr1	179075500	+	ABL2	chr1	179075346	-
intron-3CDS	ENST00000315596	ENST00000264122		ChiTaRS3.1			DA510891	PDS5B	chr13	33160763	+	CBLB	chr3	105422905	-
intron-intron	ENST00000315596	ENST00000407712		ChiTaRS3.1			DA510891	PDS5B	chr13	33160763	+	CBLB	chr3	105422905	-
intron-intron	ENST00000315596	ENST00000394027		ChiTaRS3.1			DA510891	PDS5B	chr13	33160763	+	CBLB	chr3	105422905	-
intron-intron	ENST00000315596	ENST00000403724		ChiTaRS3.1			DA510891	PDS5B	chr13	33160763	+	CBLB	chr3	105422905	-
intron-intron	ENST00000315596	ENST00000405772		ChiTaRS3.1			DA510891	PDS5B	chr13	33160763	+	CBLB	chr3	105422905	-
intron-intron	ENST00000315596	ENST00000545639		ChiTaRS3.1			DA510891	PDS5B	chr13	33160763	+	CBLB	chr3	105422905	-
5CDS-intron	ENST00000332050	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000425759		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000292733		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000542773		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000263205		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000406969		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000382974		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000541476		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000478831		ChiTaRS3.1			BG003281	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-3UTR	ENST00000255192	ENST00000399002		ChiTaRS3.1			AA703201	BHMT2	chr5	78373723	-	SPTLC3	chr20	13145752	-
intron-intron	ENST00000255192	ENST00000378194		ChiTaRS3.1			AA703201	BHMT2	chr5	78373723	-	SPTLC3	chr20	13145752	-
intron-intron	ENST00000255192	ENST00000476791		ChiTaRS3.1			AA703201	BHMT2	chr5	78373723	-	SPTLC3	chr20	13145752	-
intron-3UTR	ENST00000521567	ENST00000399002		ChiTaRS3.1			AA703201	BHMT2	chr5	78373723	-	SPTLC3	chr20	13145752	-
intron-intron	ENST00000521567	ENST00000378194		ChiTaRS3.1			AA703201	BHMT2	chr5	78373723	-	SPTLC3	chr20	13145752	-
intron-intron	ENST00000521567	ENST00000476791		ChiTaRS3.1			AA703201	BHMT2	chr5	78373723	-	SPTLC3	chr20	13145752	-
3UTR-3UTR	ENST00000226574	ENST00000226574		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000226574	ENST00000394820		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000226574	ENST00000505458		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-intron	ENST00000226574	ENST00000510638		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000226574	ENST00000600343		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000226574		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000394820		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000505458		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-intron	ENST00000394820	ENST00000510638		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000600343		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000226574		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000394820		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000505458		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-intron	ENST00000505458	ENST00000510638		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000600343		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000226574		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000394820		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000505458		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-intron	ENST00000510638	ENST00000510638		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000600343		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000226574		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000394820		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000505458		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-intron	ENST00000600343	ENST00000510638		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000600343		ChiTaRS3.1			CA311701	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-intron	ENST00000225964	ENST00000453587		ChiTaRS3.1			AA598641	COL1A1	chr17	48261755	+	UBE2W	chr8	74754799	+
intron-intron	ENST00000225964	ENST00000517608		ChiTaRS3.1			AA598641	COL1A1	chr17	48261755	+	UBE2W	chr8	74754799	+
intron-intron	ENST00000225964	ENST00000602969		ChiTaRS3.1			AA598641	COL1A1	chr17	48261755	+	UBE2W	chr8	74754799	+
intron-intron	ENST00000225964	ENST00000602593		ChiTaRS3.1			AA598641	COL1A1	chr17	48261755	+	UBE2W	chr8	74754799	+
intron-intron	ENST00000225964	ENST00000419880		ChiTaRS3.1			AA598641	COL1A1	chr17	48261755	+	UBE2W	chr8	74754799	+
intron-intron	ENST00000406775	ENST00000259486		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000406775	ENST00000427067		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000406775	ENST00000522167		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000406775	ENST00000522826		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000406775	ENST00000075322		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000406775	ENST00000518109		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000342771	ENST00000259486		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000342771	ENST00000427067		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000342771	ENST00000522167		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000342771	ENST00000522826		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000342771	ENST00000075322		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000342771	ENST00000518109		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000403018	ENST00000259486		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000403018	ENST00000427067		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000403018	ENST00000522167		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000403018	ENST00000522826		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000403018	ENST00000075322		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000403018	ENST00000518109		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000489774	ENST00000259486		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000489774	ENST00000427067		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000489774	ENST00000522167		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000489774	ENST00000522826		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000489774	ENST00000075322		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-intron	ENST00000489774	ENST00000518109		ChiTaRS3.1			AV754461	AUTS2	chr7	69813447	+	ENPP2	chr8	120600550	-
intron-3CDS	ENST00000304992	ENST00000304992		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-3CDS	ENST00000304992	ENST00000572621		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-5UTR	ENST00000304992	ENST00000575116		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-3CDS	ENST00000572621	ENST00000304992		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-3CDS	ENST00000572621	ENST00000572621		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-5UTR	ENST00000572621	ENST00000575116		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-3CDS	ENST00000575116	ENST00000304992		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-3CDS	ENST00000575116	ENST00000572621		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-5UTR	ENST00000575116	ENST00000575116		ChiTaRS3.1			AA516391	PRPF8	chr17	1580004	+	PRPF8	chr17	1556884	+
intron-intron	ENST00000396526	ENST00000443617		ChiTaRS3.1			AI114871	SNX6	chr14	35037146	-	HERC1	chr15	63901653	-
intron-intron	ENST00000396534	ENST00000443617		ChiTaRS3.1			AI114871	SNX6	chr14	35037146	-	HERC1	chr15	63901653	-
intron-intron	ENST00000362031	ENST00000443617		ChiTaRS3.1			AI114871	SNX6	chr14	35037146	-	HERC1	chr15	63901653	-
intron-intron	ENST00000355110	ENST00000443617		ChiTaRS3.1			AI114871	SNX6	chr14	35037146	-	HERC1	chr15	63901653	-
intron-intron	ENST00000441293	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000441293	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000441293	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000441293	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000441293	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000441293	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000441293	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000441293	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000314728	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000314728	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000314728	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000314728	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000314728	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000314728	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000314728	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000314728	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000347697	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000347697	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000347697	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000347697	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000347697	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000347697	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000347697	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000347697	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000395618	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000395618	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000395618	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000395618	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000395618	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000395618	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000395618	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000395618	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000575595	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000575595	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000575595	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000575595	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000575595	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-5UTR	ENST00000575595	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000575595	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
intron-intron	ENST00000575595	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395620	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000395620	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000395620	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395620	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395620	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000395620	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395620	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395620	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395626	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000395626	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000395626	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395626	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395626	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000395626	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395626	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000395626	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000571254	ENST00000441293		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000571254	ENST00000314728		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000571254	ENST00000347697		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000571254	ENST00000395618		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000571254	ENST00000575595		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-5UTR	ENST00000571254	ENST00000395620		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000571254	ENST00000395626		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
5UTR-intron	ENST00000571254	ENST00000571254		ChiTaRS3.1			BM992471	EPN2	chr17	19186382	-	EPN2	chr17	19186270	+
3UTR-intron	ENST00000318833	ENST00000413405		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000414457		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000446807		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000423223		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000445521		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000455774		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000430295		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000608994		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000609413		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000537908		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000427063		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-intron	ENST00000318833	ENST00000438202		ChiTaRS3.1			D44921	ZFP3	chr17	4996822	-	PTCHD3P1	chr10	29755871	-
3UTR-3CDS	ENST00000234313	ENST00000234313		ChiTaRS3.1			CB046501	PLEK	chr2	68623562	+	PLEK	chr2	68613714	+
intron-intron	ENST00000375441	ENST00000375441		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3UTR	ENST00000375441	ENST00000451881		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3UTR	ENST00000375441	ENST00000326335		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000375441	ENST00000375440		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000375441	ENST00000463426		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-intron	ENST00000451881	ENST00000375441		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-3UTR	ENST00000451881	ENST00000451881		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-3UTR	ENST00000451881	ENST00000326335		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-intron	ENST00000451881	ENST00000375440		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-intron	ENST00000451881	ENST00000463426		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-intron	ENST00000326335	ENST00000375441		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-3UTR	ENST00000326335	ENST00000451881		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-3UTR	ENST00000326335	ENST00000326335		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-intron	ENST00000326335	ENST00000375440		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
3UTR-intron	ENST00000326335	ENST00000463426		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000375440	ENST00000375441		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3UTR	ENST00000375440	ENST00000451881		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3UTR	ENST00000375440	ENST00000326335		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000375440	ENST00000375440		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000375440	ENST00000463426		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000463426	ENST00000375441		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3UTR	ENST00000463426	ENST00000451881		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3UTR	ENST00000463426	ENST00000326335		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000463426	ENST00000375440		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-intron	ENST00000463426	ENST00000463426		ChiTaRS3.1			AA995801	CUL4A	chr13	113918502	-	CUL4A	chr13	113918587	+
intron-3CDS	ENST00000341056	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000341056	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000341056	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000396045	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000396045	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000396045	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000310758	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000310758	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000310758	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000396040	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000396040	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000396040	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000442504	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000442504	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000442504	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000448602	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000448602	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000448602	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000479447	ENST00000368679		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3CDS	ENST00000479447	ENST00000368676		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-intron	ENST00000479447	ENST00000467145		ChiTaRS3.1			BI051281	ELMO1	chr7	37214909	+	ADAM12	chr10	127734650	-
intron-3UTR	ENST00000309534	ENST00000252699		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000309534	ENST00000424234		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000309534	ENST00000390009		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000309534	ENST00000497637		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-3UTR	ENST00000398392	ENST00000252699		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000398392	ENST00000424234		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000398392	ENST00000390009		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000398392	ENST00000497637		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-3UTR	ENST00000482016	ENST00000252699		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000482016	ENST00000424234		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000482016	ENST00000390009		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000482016	ENST00000497637		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-3UTR	ENST00000462901	ENST00000252699		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000462901	ENST00000424234		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000462901	ENST00000390009		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000462901	ENST00000497637		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-3UTR	ENST00000474441	ENST00000252699		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000474441	ENST00000424234		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000474441	ENST00000390009		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000474441	ENST00000497637		ChiTaRS3.1			BP392581	CGGBP1	chr3	88108084	+	ACTN4	chr19	39220788	+
intron-intron	ENST00000298281	ENST00000506722		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-intron	ENST00000298281	ENST00000394537		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-intron	ENST00000298281	ENST00000357077		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-intron	ENST00000298281	ENST00000264366		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-intron	ENST00000298281	ENST00000509550		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-intron	ENST00000298281	ENST00000510275		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-intron	ENST00000298281	ENST00000504887		ChiTaRS3.1			BF963381	PCF11	chr11	82869381	-	ANK2	chr4	114201791	+
intron-3UTR	ENST00000320389	ENST00000320389		ChiTaRS3.1			BP310651	KIF1A	chr2	241653478	-	KIF1A	chr2	241656639	-
intron-3UTR	ENST00000320389	ENST00000498729		ChiTaRS3.1			BP310651	KIF1A	chr2	241653478	-	KIF1A	chr2	241656639	-
intron-3UTR	ENST00000498729	ENST00000320389		ChiTaRS3.1			BP310651	KIF1A	chr2	241653478	-	KIF1A	chr2	241656639	-
intron-3UTR	ENST00000498729	ENST00000498729		ChiTaRS3.1			BP310651	KIF1A	chr2	241653478	-	KIF1A	chr2	241656639	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BQ339241	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000316334	ENST00000231668		ChiTaRS3.1			AK172771	LNX2	chr13	28121978	-	BNIP1	chr5	172577227	+
intron-intron	ENST00000316334	ENST00000351486		ChiTaRS3.1			AK172771	LNX2	chr13	28121978	-	BNIP1	chr5	172577227	+
intron-intron	ENST00000316334	ENST00000352523		ChiTaRS3.1			AK172771	LNX2	chr13	28121978	-	BNIP1	chr5	172577227	+
intron-intron	ENST00000316334	ENST00000393770		ChiTaRS3.1			AK172771	LNX2	chr13	28121978	-	BNIP1	chr5	172577227	+
5CDS-3UTR	ENST00000372842	ENST00000372842		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
5CDS-3UTR	ENST00000372842	ENST00000372838		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
5CDS-intron	ENST00000372842	ENST00000493788		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
5CDS-3UTR	ENST00000372838	ENST00000372842		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
5CDS-3UTR	ENST00000372838	ENST00000372838		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
5CDS-intron	ENST00000372838	ENST00000493788		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
intron-3UTR	ENST00000493788	ENST00000372842		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
intron-3UTR	ENST00000493788	ENST00000372838		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
intron-intron	ENST00000493788	ENST00000493788		ChiTaRS3.1			CA430721	CERCAM	chr9	131199620	+	CERCAM	chr9	131199543	-
intron-intron	ENST00000518322	ENST00000518322		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000518322	ENST00000522324		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000518322	ENST00000423990		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000518322	ENST00000517718		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000518322	ENST00000519679		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000518322	ENST00000520363		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000522324	ENST00000518322		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000522324	ENST00000522324		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000522324	ENST00000423990		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000522324	ENST00000517718		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000522324	ENST00000519679		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000522324	ENST00000520363		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000423990	ENST00000518322		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000423990	ENST00000522324		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000423990	ENST00000423990		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000423990	ENST00000517718		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000423990	ENST00000519679		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000423990	ENST00000520363		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000517718	ENST00000518322		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000517718	ENST00000522324		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000517718	ENST00000423990		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000517718	ENST00000517718		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000517718	ENST00000519679		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000517718	ENST00000520363		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000519679	ENST00000518322		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000519679	ENST00000522324		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000519679	ENST00000423990		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000519679	ENST00000517718		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000519679	ENST00000519679		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000519679	ENST00000520363		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000520363	ENST00000518322		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000520363	ENST00000522324		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000520363	ENST00000423990		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000520363	ENST00000517718		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000520363	ENST00000519679		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-intron	ENST00000520363	ENST00000520363		ChiTaRS3.1			BG996511	FAM92A1	chr8	94729294	-	FAM92A1	chr8	94729523	+
intron-3UTR	ENST00000381962	ENST00000381962		ChiTaRS3.1			BU608361	SRXN1	chr20	627566	+	SRXN1	chr20	627636	-
intron-intron	ENST00000262961	ENST00000396821		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-5UTR	ENST00000262961	ENST00000444597		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000262961	ENST00000381633		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000262961	ENST00000432525		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000591965	ENST00000396821		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-5UTR	ENST00000591965	ENST00000444597		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000591965	ENST00000381633		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000591965	ENST00000432525		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000439086	ENST00000396821		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-5UTR	ENST00000439086	ENST00000444597		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000439086	ENST00000381633		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000439086	ENST00000432525		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000592398	ENST00000396821		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-5UTR	ENST00000592398	ENST00000444597		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000592398	ENST00000381633		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000592398	ENST00000432525		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000591712	ENST00000396821		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-5UTR	ENST00000591712	ENST00000444597		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000591712	ENST00000381633		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-intron	ENST00000591712	ENST00000432525		ChiTaRS3.1			BF820271	ZFR2	chr19	3860155	+	DDX17	chr22	38884280	+
intron-3UTR	ENST00000265044	ENST00000265044		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000467789		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000476217		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000478842		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000463503		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000496050		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000467789	ENST00000265044		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000467789		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000476217		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000478842		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000463503		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000496050		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000476217	ENST00000265044		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000467789		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000476217		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000478842		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000463503		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000496050		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000478842	ENST00000265044		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000467789		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000476217		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000478842		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000463503		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000496050		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000463503	ENST00000265044		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000467789		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000476217		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000478842		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000463503		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000496050		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000496050	ENST00000265044		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000467789		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000476217		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000478842		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000463503		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000496050		ChiTaRS3.1			AW838201	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
In-frame	ENST00000356239	ENST00000356239		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000356239	ENST00000358100		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000356239	ENST00000359028		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000356239	ENST00000394564		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
5CDS-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000356239		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000358100		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000359028		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000394564		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
5CDS-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000356239		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000358100		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000359028		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000394564		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
5CDS-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000356239		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000358100		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000359028		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000394564		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000356239		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000358100		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000359028		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000394564		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			CB177531	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			U19408	BCR	chr22	23632451	+	ABL1	chr9	133615066	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			U19408	BCR	chr22	23632451	+	ABL1	chr9	133615066	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			U19408	BCR	chr22	23632451	+	ABL1	chr9	133615066	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			U19408	BCR	chr22	23632451	+	ABL1	chr9	133615066	+
3UTR-3UTR	ENST00000299163	ENST00000299163		ChiTaRS3.1			BE169361	HIF1AN	chr10	102309033	-	HIF1AN	chr10	102308568	+
3UTR-intron	ENST00000299163	ENST00000528044		ChiTaRS3.1			BE169361	HIF1AN	chr10	102309033	-	HIF1AN	chr10	102308568	+
intron-3UTR	ENST00000528044	ENST00000299163		ChiTaRS3.1			BE169361	HIF1AN	chr10	102309033	-	HIF1AN	chr10	102308568	+
intron-intron	ENST00000528044	ENST00000528044		ChiTaRS3.1			BE169361	HIF1AN	chr10	102309033	-	HIF1AN	chr10	102308568	+
3UTR-intron	ENST00000372358	ENST00000262507		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372358	ENST00000567072		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372358	ENST00000567933		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372358	ENST00000567384		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
intron-intron	ENST00000546165	ENST00000262507		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
intron-intron	ENST00000546165	ENST00000567072		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
intron-intron	ENST00000546165	ENST00000567933		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
intron-intron	ENST00000546165	ENST00000567384		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372352	ENST00000262507		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372352	ENST00000567072		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372352	ENST00000567933		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372352	ENST00000567384		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372351	ENST00000262507		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372351	ENST00000567072		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372351	ENST00000567933		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000372351	ENST00000567384		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000467138	ENST00000262507		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000467138	ENST00000567072		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000467138	ENST00000567933		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
3UTR-intron	ENST00000467138	ENST00000567384		ChiTaRS3.1			AW889761	EXOSC2	chr9	133580139	+	COQ9	chr16	57490113	+
intron-intron	ENST00000266560	ENST00000261488		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000266560	ENST00000412891		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000266560	ENST00000540032		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000266560	ENST00000482207		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000542370	ENST00000261488		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000542370	ENST00000412891		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000542370	ENST00000540032		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
intron-intron	ENST00000542370	ENST00000482207		ChiTaRS3.1			BF871061	RBP5	chr12	7281334	-	ENOX1	chr13	44021002	+
3UTR-3UTR	ENST00000361565	ENST00000361565		ChiTaRS3.1			CB244001	IPO9	chr1	201845815	-	IPO9	chr1	201845676	+
3UTR-intron	ENST00000361565	ENST00000464348		ChiTaRS3.1			CB244001	IPO9	chr1	201845815	-	IPO9	chr1	201845676	+
intron-3UTR	ENST00000464348	ENST00000361565		ChiTaRS3.1			CB244001	IPO9	chr1	201845815	-	IPO9	chr1	201845676	+
intron-intron	ENST00000464348	ENST00000464348		ChiTaRS3.1			CB244001	IPO9	chr1	201845815	-	IPO9	chr1	201845676	+
5CDS-intron	ENST00000261168	ENST00000495646		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000261168	ENST00000336689		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000261168	ENST00000437606		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000261168	ENST00000449467		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000543189	ENST00000495646		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000543189	ENST00000336689		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000543189	ENST00000437606		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000543189	ENST00000449467		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000536444	ENST00000495646		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000536444	ENST00000336689		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000536444	ENST00000437606		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000536444	ENST00000449467		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000544627	ENST00000495646		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000544627	ENST00000336689		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000544627	ENST00000437606		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000544627	ENST00000449467		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
3UTR-intron	ENST00000541654	ENST00000495646		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
3UTR-intron	ENST00000541654	ENST00000336689		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
3UTR-intron	ENST00000541654	ENST00000437606		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
3UTR-intron	ENST00000541654	ENST00000449467		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000540793	ENST00000495646		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000540793	ENST00000336689		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000540793	ENST00000437606		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
5CDS-intron	ENST00000540793	ENST00000449467		ChiTaRS3.1			AA358761	ATF7IP	chr12	14613863	+	ASAP3	chr1	23761436	-
3UTR-3UTR	ENST00000369085	ENST00000369085		ChiTaRS3.1			BU607641	BAG3	chr10	121437118	-	BAG3	chr10	121437063	+
3UTR-3UTR	ENST00000366955	ENST00000366955		ChiTaRS3.1			AW090091	CENPF	chr1	214837363	-	CENPF	chr1	214837338	+
3UTR-intron	ENST00000366955	ENST00000467765		ChiTaRS3.1			AW090091	CENPF	chr1	214837363	-	CENPF	chr1	214837338	+
intron-3UTR	ENST00000467765	ENST00000366955		ChiTaRS3.1			AW090091	CENPF	chr1	214837363	-	CENPF	chr1	214837338	+
intron-intron	ENST00000467765	ENST00000467765		ChiTaRS3.1			AW090091	CENPF	chr1	214837363	-	CENPF	chr1	214837338	+
intron-intron	ENST00000412145	ENST00000514251		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000412145	ENST00000321464		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000412145	ENST00000441582		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000412145	ENST00000512327		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000446349	ENST00000514251		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000446349	ENST00000321464		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000446349	ENST00000441582		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000446349	ENST00000512327		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000374541	ENST00000514251		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000374541	ENST00000321464		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000374541	ENST00000441582		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000374541	ENST00000512327		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000262539	ENST00000514251		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000262539	ENST00000321464		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000262539	ENST00000441582		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000262539	ENST00000512327		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000394827	ENST00000514251		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000394827	ENST00000321464		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000394827	ENST00000441582		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000394827	ENST00000512327		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000497739	ENST00000514251		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000497739	ENST00000321464		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000497739	ENST00000441582		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000497739	ENST00000512327		ChiTaRS3.1			BF368991	PTPN3	chr9	112201174	-	ZBTB38	chr3	141156199	+
intron-intron	ENST00000511072	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000400427		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000400424		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000408910		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000408989		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000400423		ChiTaRS3.1			EL582681	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000299338	ENST00000550404		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000299338	ENST00000261739		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000561064	ENST00000550404		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000561064	ENST00000261739		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000558594	ENST00000550404		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000558594	ENST00000261739		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000560246	ENST00000550404		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000560246	ENST00000261739		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000558862	ENST00000550404		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000558862	ENST00000261739		ChiTaRS3.1			BE047721	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3CDS	ENST00000261600	ENST00000505459		ChiTaRS3.1			AK130591	THOC1	chr18	253002	-	SRP19	chr5	112203190	+
intron-3UTR	ENST00000261600	ENST00000282999		ChiTaRS3.1			AK130591	THOC1	chr18	253002	-	SRP19	chr5	112203190	+
intron-3UTR	ENST00000261600	ENST00000515463		ChiTaRS3.1			AK130591	THOC1	chr18	253002	-	SRP19	chr5	112203190	+
intron-3CDS	ENST00000582313	ENST00000505459		ChiTaRS3.1			AK130591	THOC1	chr18	253002	-	SRP19	chr5	112203190	+
intron-3UTR	ENST00000582313	ENST00000282999		ChiTaRS3.1			AK130591	THOC1	chr18	253002	-	SRP19	chr5	112203190	+
intron-3UTR	ENST00000582313	ENST00000515463		ChiTaRS3.1			AK130591	THOC1	chr18	253002	-	SRP19	chr5	112203190	+
Frame-shit	ENST00000298229	ENST00000298229		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000298229	ENST00000541756		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000298229	ENST00000538751		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000541756	ENST00000298229		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000541756	ENST00000541756		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000541756	ENST00000538751		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000538751	ENST00000298229		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000538751	ENST00000541756		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
Frame-shit	ENST00000538751	ENST00000538751		ChiTaRS3.1			BE765401	INPPL1	chr11	71944142	-	INPPL1	chr11	71944753	+
intron-intron	ENST00000359933	ENST00000258530		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000359933	ENST00000539978		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000359933	ENST00000546731		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000359933	ENST00000551662		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000359933	ENST00000549573		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000261834	ENST00000258530		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000261834	ENST00000539978		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000261834	ENST00000546731		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000261834	ENST00000551662		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
intron-intron	ENST00000261834	ENST00000549573		ChiTaRS3.1			AA705711	ATG2B	chr14	96747769	+	APPL2	chr12	105594371	+
3UTR-intron	ENST00000373509	ENST00000537045		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
3UTR-intron	ENST00000373509	ENST00000263196		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
3UTR-intron	ENST00000373509	ENST00000545799		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
3UTR-intron	ENST00000373509	ENST00000473832		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
intron-intron	ENST00000468243	ENST00000537045		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
intron-intron	ENST00000468243	ENST00000263196		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
intron-intron	ENST00000468243	ENST00000545799		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
intron-intron	ENST00000468243	ENST00000473832		ChiTaRS3.1			BF940951	PIM1	chr6	37142941	-	DGCR2	chr22	19034210	+
intron-3CDS	ENST00000418539	ENST00000315330		ChiTaRS3.1			BE169871	BCYRN1	chrX	70777096	-	CLEC1A	chr12	10224050	+
intron-3CDS	ENST00000418539	ENST00000457018		ChiTaRS3.1			BE169871	BCYRN1	chrX	70777096	-	CLEC1A	chr12	10224050	+
intron-3CDS	ENST00000418539	ENST00000420265		ChiTaRS3.1			BE169871	BCYRN1	chrX	70777096	-	CLEC1A	chr12	10224050	+
intron-3UTR	ENST00000432999	ENST00000439559		ChiTaRS3.1			DA493591	ZBED5	chr11	10879213	-	LINC00863	chr10	89102801	+
intron-3UTR	ENST00000413761	ENST00000439559		ChiTaRS3.1			DA493591	ZBED5	chr11	10879213	-	LINC00863	chr10	89102801	+
intron-3UTR	ENST00000525350	ENST00000439559		ChiTaRS3.1			DA493591	ZBED5	chr11	10879213	-	LINC00863	chr10	89102801	+
intron-5UTR	ENST00000433197	ENST00000375190		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000433197	ENST00000589966		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000433197	ENST00000411851		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000433197	ENST00000587717		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-5UTR	ENST00000577567	ENST00000375190		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000577567	ENST00000589966		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000577567	ENST00000411851		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000577567	ENST00000587717		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-5UTR	ENST00000606895	ENST00000375190		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000606895	ENST00000589966		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000606895	ENST00000411851		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
intron-intron	ENST00000606895	ENST00000587717		ChiTaRS3.1			D38081	ERN1	chr17	62150309	+	TBXA2R	chr19	3606730	-
3UTR-3UTR	ENST00000437774	ENST00000437774		ChiTaRS3.1			BG036321	AFG3L1P	chr16	90060242	-	AFG3L1P	chr16	90061213	+
intron-intron	ENST00000283290	ENST00000382148		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000447367		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000382150		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000382152		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000509207		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000382149		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000359001		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382148		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000447367		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382150		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382152		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000509207		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382149		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000359001		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382148		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000447367		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382150		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382152		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000509207		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382149		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000359001		ChiTaRS3.1			AW386111	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000409287	ENST00000357214		ChiTaRS3.1			CF454521	SLC19A3	chr2	228582651	-	SFPQ	chr1	35643645	-
intron-5UTR	ENST00000409287	ENST00000468598		ChiTaRS3.1			CF454521	SLC19A3	chr2	228582651	-	SFPQ	chr1	35643645	-
intron-intron	ENST00000258403	ENST00000357214		ChiTaRS3.1			CF454521	SLC19A3	chr2	228582651	-	SFPQ	chr1	35643645	-
intron-5UTR	ENST00000258403	ENST00000468598		ChiTaRS3.1			CF454521	SLC19A3	chr2	228582651	-	SFPQ	chr1	35643645	-
intron-intron	ENST00000541617	ENST00000357214		ChiTaRS3.1			CF454521	SLC19A3	chr2	228582651	-	SFPQ	chr1	35643645	-
intron-5UTR	ENST00000541617	ENST00000468598		ChiTaRS3.1			CF454521	SLC19A3	chr2	228582651	-	SFPQ	chr1	35643645	-
intron-intron	ENST00000355653	ENST00000416600		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-3UTR	ENST00000355653	ENST00000428216		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-intron	ENST00000355653	ENST00000358134		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-intron	ENST00000587173	ENST00000416600		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-3UTR	ENST00000587173	ENST00000428216		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-intron	ENST00000587173	ENST00000358134		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-intron	ENST00000420567	ENST00000416600		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-3UTR	ENST00000420567	ENST00000428216		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-intron	ENST00000420567	ENST00000358134		ChiTaRS3.1			H83411	VAT1	chr17	41166820	+	MAVS	chr20	3848867	-
intron-intron	ENST00000412962	ENST00000491145		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000412962	ENST00000395720		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000412962	ENST00000357698		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000412962	ENST00000380230		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000412962	ENST00000496660		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000412962	ENST00000319580		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000412962	ENST00000395723		ChiTaRS3.1			BE008451	CROCCP2	chr1	16955346	-	ANKDD1A	chr15	65248007	+
intron-intron	ENST00000393276	ENST00000606098		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393276	ENST00000285083		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393276	ENST00000605932		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393276	ENST00000435829		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393276	ENST00000544043		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393276	ENST00000607329		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393274	ENST00000606098		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393274	ENST00000285083		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393274	ENST00000605932		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393274	ENST00000435829		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393274	ENST00000544043		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393274	ENST00000607329		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393277	ENST00000606098		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393277	ENST00000285083		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393277	ENST00000605932		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393277	ENST00000435829		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393277	ENST00000544043		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000393277	ENST00000607329		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000481894	ENST00000606098		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000481894	ENST00000285083		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000481894	ENST00000605932		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000481894	ENST00000435829		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000481894	ENST00000544043		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-intron	ENST00000481894	ENST00000607329		ChiTaRS3.1			BF933501	DENND2C	chr1	115110615	+	OXNAD1	chr3	16358492	+
intron-3UTR	ENST00000378746	ENST00000262646		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378746	ENST00000531289		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378746	ENST00000529579		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378746	ENST00000530071		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3UTR	ENST00000378735	ENST00000262646		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378735	ENST00000531289		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378735	ENST00000529579		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000378735	ENST00000530071		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3UTR	ENST00000403231	ENST00000262646		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000403231	ENST00000531289		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000403231	ENST00000529579		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000403231	ENST00000530071		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3UTR	ENST00000487055	ENST00000262646		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000487055	ENST00000531289		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000487055	ENST00000529579		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-intron	ENST00000487055	ENST00000530071		ChiTaRS3.1			AW998961	KIF3A	chr5	132047721	+	RAB2A	chr8	61534288	-
intron-3CDS	ENST00000318602	ENST00000318602		ChiTaRS3.1			AA804941	A2M	chr12	9229998	-	A2M	chr12	9230399	+
intron-5UTR	ENST00000318602	ENST00000542567		ChiTaRS3.1			AA804941	A2M	chr12	9229998	-	A2M	chr12	9230399	+
intron-3CDS	ENST00000542567	ENST00000318602		ChiTaRS3.1			AA804941	A2M	chr12	9229998	-	A2M	chr12	9230399	+
intron-5UTR	ENST00000542567	ENST00000542567		ChiTaRS3.1			AA804941	A2M	chr12	9229998	-	A2M	chr12	9230399	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			EY123349	MALAT1	chr11	65267190	-	MALAT1	chr11	65267701	-
Frame-shit	ENST00000585892	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
Frame-shit	ENST00000314646	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
Frame-shit	ENST00000359692	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
Frame-shit	ENST00000389253	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
Frame-shit	ENST00000355667	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
Frame-shit	ENST00000408974	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
intron-3CDS	ENST00000591819	ENST00000373050		ChiTaRS3.1			BQ344631	DNM2	chr19	10940882	-	MDFI	chr6	41617566	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			CB266111	MALAT1	chr11	65267648	+	MALAT1	chr11	65266832	+
3UTR-3UTR	ENST00000367459	ENST00000367459		ChiTaRS3.1			N51141	RGS1	chr1	192548513	-	RGS1	chr1	192548991	+
3UTR-intron	ENST00000367459	ENST00000469578		ChiTaRS3.1			N51141	RGS1	chr1	192548513	-	RGS1	chr1	192548991	+
intron-3UTR	ENST00000469578	ENST00000367459		ChiTaRS3.1			N51141	RGS1	chr1	192548513	-	RGS1	chr1	192548991	+
intron-intron	ENST00000469578	ENST00000469578		ChiTaRS3.1			N51141	RGS1	chr1	192548513	-	RGS1	chr1	192548991	+
3UTR-intron	ENST00000432069	ENST00000537344		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000432069	ENST00000256194		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000432069	ENST00000527546		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000432069	ENST00000342902		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000432069	ENST00000379612		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000432069	ENST00000527195		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000564053	ENST00000537344		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000564053	ENST00000256194		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000564053	ENST00000527546		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000564053	ENST00000342902		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000564053	ENST00000379612		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000564053	ENST00000527195		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-intron	ENST00000568199	ENST00000537344		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-intron	ENST00000568199	ENST00000256194		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-intron	ENST00000568199	ENST00000527546		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-intron	ENST00000568199	ENST00000342902		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-intron	ENST00000568199	ENST00000379612		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-intron	ENST00000568199	ENST00000527195		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000268605	ENST00000537344		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000268605	ENST00000256194		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000268605	ENST00000527546		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000268605	ENST00000342902		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000268605	ENST00000379612		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000268605	ENST00000527195		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000568146	ENST00000537344		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000568146	ENST00000256194		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000568146	ENST00000527546		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000568146	ENST00000342902		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000568146	ENST00000379612		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
3UTR-intron	ENST00000568146	ENST00000527195		ChiTaRS3.1			AW015911	NOL3	chr16	67209275	-	MICAL2	chr11	12284696	-
intron-3UTR	ENST00000265981	ENST00000265981		ChiTaRS3.1			CA314811	RNF141	chr11	10533839	+	RNF141	chr11	10533952	-
intron-intron	ENST00000265981	ENST00000528665		ChiTaRS3.1			CA314811	RNF141	chr11	10533839	+	RNF141	chr11	10533952	-
intron-3UTR	ENST00000528665	ENST00000265981		ChiTaRS3.1			CA314811	RNF141	chr11	10533839	+	RNF141	chr11	10533952	-
intron-intron	ENST00000528665	ENST00000528665		ChiTaRS3.1			CA314811	RNF141	chr11	10533839	+	RNF141	chr11	10533952	-
intron-3UTR	ENST00000268489	ENST00000217456		ChiTaRS3.1			AI961461	ZFHX3	chr16	73073500	-	APMAP	chr20	24943903	-
intron-3UTR	ENST00000268489	ENST00000447138		ChiTaRS3.1			AI961461	ZFHX3	chr16	73073500	-	APMAP	chr20	24943903	-
intron-3UTR	ENST00000397992	ENST00000217456		ChiTaRS3.1			AI961461	ZFHX3	chr16	73073500	-	APMAP	chr20	24943903	-
intron-3UTR	ENST00000397992	ENST00000447138		ChiTaRS3.1			AI961461	ZFHX3	chr16	73073500	-	APMAP	chr20	24943903	-
intron-3UTR	ENST00000558842	ENST00000217456		ChiTaRS3.1			AI961461	ZFHX3	chr16	73073500	-	APMAP	chr20	24943903	-
intron-3UTR	ENST00000558842	ENST00000447138		ChiTaRS3.1			AI961461	ZFHX3	chr16	73073500	-	APMAP	chr20	24943903	-
intron-3CDS	ENST00000373912	ENST00000278407		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373912	ENST00000340687		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373912	ENST00000378323		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373912	ENST00000378324		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373912	ENST00000403558		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-intron	ENST00000373912	ENST00000531605		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373909	ENST00000278407		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373909	ENST00000340687		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373909	ENST00000378323		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373909	ENST00000378324		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000373909	ENST00000403558		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-intron	ENST00000373909	ENST00000531605		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000313433	ENST00000278407		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000313433	ENST00000340687		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000313433	ENST00000378323		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000313433	ENST00000378324		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-3CDS	ENST00000313433	ENST00000403558		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
intron-intron	ENST00000313433	ENST00000531605		ChiTaRS3.1			CA309301	RPA2	chr1	28218257	+	SERPING1	chr11	57374011	-
Frame-shit	ENST00000349938	ENST00000349938		ChiTaRS3.1			BF064081	ARMC9	chr2	232137747	-	ARMC9	chr2	232146819	-
5CDS-3UTR	ENST00000349938	ENST00000483477		ChiTaRS3.1			BF064081	ARMC9	chr2	232137747	-	ARMC9	chr2	232146819	-
3UTR-3CDS	ENST00000483477	ENST00000349938		ChiTaRS3.1			BF064081	ARMC9	chr2	232137747	-	ARMC9	chr2	232146819	-
3UTR-3UTR	ENST00000483477	ENST00000483477		ChiTaRS3.1			BF064081	ARMC9	chr2	232137747	-	ARMC9	chr2	232146819	-
5CDS-3UTR	ENST00000472174	ENST00000472174		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000472174	ENST00000532642		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000472174	ENST00000236067		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000472174	ENST00000471859		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000472174	ENST00000472277		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000472174	ENST00000498664		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000532642	ENST00000472174		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000532642	ENST00000532642		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000532642	ENST00000236067		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000532642	ENST00000471859		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000532642	ENST00000472277		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000532642	ENST00000498664		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000236067	ENST00000472174		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000236067	ENST00000532642		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000236067	ENST00000236067		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000236067	ENST00000471859		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000236067	ENST00000472277		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000236067	ENST00000498664		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000471859	ENST00000472174		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000471859	ENST00000532642		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000471859	ENST00000236067		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000471859	ENST00000471859		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000471859	ENST00000472277		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000471859	ENST00000498664		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000472277	ENST00000472174		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000472277	ENST00000532642		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000472277	ENST00000236067		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000472277	ENST00000471859		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000472277	ENST00000472277		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-3UTR	ENST00000472277	ENST00000498664		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000498664	ENST00000472174		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000498664	ENST00000532642		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000498664	ENST00000236067		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000498664	ENST00000471859		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-intron	ENST00000498664	ENST00000472277		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
5CDS-3UTR	ENST00000498664	ENST00000498664		ChiTaRS3.1			AA420851	ATP6V0B	chr1	44443965	+	ATP6V0B	chr1	44443915	-
intron-intron	ENST00000474885	ENST00000372629		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000474885	ENST00000468024		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000474885	ENST00000472484		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000474885	ENST00000415568		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000474885	ENST00000472745		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-intron	ENST00000474885	ENST00000494801		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-intron	ENST00000459522	ENST00000372629		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000459522	ENST00000468024		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000459522	ENST00000472484		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000459522	ENST00000415568		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-5UTR	ENST00000459522	ENST00000472745		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
intron-intron	ENST00000459522	ENST00000494801		ChiTaRS3.1			CV324611	RNA5-8S5	chr?	154599	-	TCEAL4	chrX	102840457	+
5CDS-5UTR	ENST00000295897	ENST00000250784		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000295897	ENST00000477725		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000415165	ENST00000250784		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000415165	ENST00000477725		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000503124	ENST00000250784		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000503124	ENST00000477725		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000509063	ENST00000250784		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000509063	ENST00000477725		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000401494	ENST00000250784		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000401494	ENST00000477725		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
3UTR-5UTR	ENST00000505649	ENST00000250784		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
3UTR-intron	ENST00000505649	ENST00000477725		ChiTaRS3.1			AF116711	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
intron-3CDS	ENST00000395952	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000395952	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000375842	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000375842	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000440843	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000440843	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000471644	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000471644	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000538874	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000538874	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550556	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550556	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547161	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547161	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000464268	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000464268	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000444818	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000444818	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000551038	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000551038	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549543	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549543	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000494438	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000494438	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000413853	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000413853	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549853	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549853	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547325	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547325	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000488103	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000488103	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000457366	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000457366	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000548592	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000548592	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000482058	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000482058	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000446529	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000446529	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000552042	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000552042	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000546528	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000546528	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000475067	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000475067	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000429735	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000429735	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549722	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549722	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550719	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550719	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000495335	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000495335	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000432617	ENST00000373206		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000432617	ENST00000373204		ChiTaRS3.1			BF056541	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3UTR	ENST00000262915	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000262915	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000262915	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372375	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372375	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372375	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000351035	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000351035	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000351035	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372374	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372374	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372374	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000353126	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000353126	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000353126	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000545417	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000545417	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000545417	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000330208	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000330208	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000330208	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000335430	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000335430	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000335430	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372377	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372377	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372377	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361392	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361392	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000361392	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361400	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361400	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000361400	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000347631	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000347631	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000347631	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361812	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361812	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000361812	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372362	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372362	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372362	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000531451	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000531451	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000531451	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372366	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372366	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372366	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372365	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372365	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372365	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372368	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372368	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372368	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000332628	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000332628	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000332628	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372372	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372372	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372372	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000531816	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000531816	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000531816	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000528371	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000528371	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000528371	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372369	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372369	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372369	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000531993	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000531993	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000531993	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361746	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000361746	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000361746	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000533933	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000533933	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000533933	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372367	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000372367	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000372367	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000461375	ENST00000318430		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3UTR	ENST00000461375	ENST00000589691		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-intron	ENST00000461375	ENST00000591144		ChiTaRS3.1			BF896801	ST3GAL3	chr1	44329062	+	TMC8	chr17	76138025	-
intron-3CDS	ENST00000396037	ENST00000396037		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000396037	ENST00000539510		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000396037	ENST00000536558		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000396037	ENST00000404299		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000396037	ENST00000381424		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-3CDS	ENST00000539510	ENST00000396037		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000539510	ENST00000539510		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000539510	ENST00000536558		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000539510	ENST00000404299		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000539510	ENST00000381424		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-3CDS	ENST00000536558	ENST00000396037		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000536558	ENST00000539510		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000536558	ENST00000536558		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000536558	ENST00000404299		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000536558	ENST00000381424		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-3CDS	ENST00000404299	ENST00000396037		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000404299	ENST00000539510		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000404299	ENST00000536558		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000404299	ENST00000404299		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000404299	ENST00000381424		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-3CDS	ENST00000381424	ENST00000396037		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000381424	ENST00000539510		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000381424	ENST00000536558		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000381424	ENST00000404299		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
intron-intron	ENST00000381424	ENST00000381424		ChiTaRS3.1			AA169311	ST8SIA1	chr12	22440151	+	ST8SIA1	chr12	22408316	-
5CDS-intron	ENST00000267101	ENST00000393066		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000267101	ENST00000262294		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000267101	ENST00000376149		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000267101	ENST00000393065		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000267101	ENST00000584889		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000450146	ENST00000393066		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000450146	ENST00000262294		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000450146	ENST00000376149		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000450146	ENST00000393065		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000450146	ENST00000584889		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000415288	ENST00000393066		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000415288	ENST00000262294		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000415288	ENST00000376149		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000415288	ENST00000393065		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000415288	ENST00000584889		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000553131	ENST00000393066		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000553131	ENST00000262294		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000553131	ENST00000376149		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000553131	ENST00000393065		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000553131	ENST00000584889		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
intron-intron	ENST00000411731	ENST00000393066		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
intron-3UTR	ENST00000411731	ENST00000262294		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
intron-3UTR	ENST00000411731	ENST00000376149		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
intron-3UTR	ENST00000411731	ENST00000393065		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
intron-intron	ENST00000411731	ENST00000584889		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000549832	ENST00000393066		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000549832	ENST00000262294		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000549832	ENST00000376149		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-3UTR	ENST00000549832	ENST00000393065		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
5CDS-intron	ENST00000549832	ENST00000584889		ChiTaRS3.1			DN914711	ERBB3	chr12	56495716	-	TRIM37	chr17	57076529	-
intron-intron	ENST00000287641	ENST00000548241		ChiTaRS3.1			DB303581	SST	chr3	187386808	+	ANKRD52	chr12	56636333	+
intron-3UTR	ENST00000287641	ENST00000267116		ChiTaRS3.1			DB303581	SST	chr3	187386808	+	ANKRD52	chr12	56636333	+
intron-3UTR	ENST00000389413	ENST00000389413		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389413	ENST00000409483		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389413	ENST00000389416		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389413	ENST00000389418		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-intron	ENST00000389413	ENST00000404321		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000409483	ENST00000389413		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000409483	ENST00000409483		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000409483	ENST00000389416		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000409483	ENST00000389418		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-intron	ENST00000409483	ENST00000404321		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389416	ENST00000389413		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389416	ENST00000409483		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389416	ENST00000389416		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389416	ENST00000389418		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-intron	ENST00000389416	ENST00000404321		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389418	ENST00000389413		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389418	ENST00000409483		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389418	ENST00000389416		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000389418	ENST00000389418		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-intron	ENST00000389418	ENST00000404321		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000404321	ENST00000389413		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000404321	ENST00000409483		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000404321	ENST00000389416		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000404321	ENST00000389418		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-intron	ENST00000404321	ENST00000404321		ChiTaRS3.1			BE696621	PTPRN2	chr7	157332663	+	PTPRN2	chr7	157332682	-
intron-3UTR	ENST00000344749	ENST00000344749		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000344749	ENST00000262965		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000344749	ENST00000453954		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000344749	ENST00000395423		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000344749	ENST00000588136		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000262965	ENST00000344749		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000262965	ENST00000262965		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000262965	ENST00000453954		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000262965	ENST00000395423		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000262965	ENST00000588136		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000453954	ENST00000344749		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000453954	ENST00000262965		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000453954	ENST00000453954		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000453954	ENST00000395423		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000453954	ENST00000588136		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000395423	ENST00000344749		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000395423	ENST00000262965		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000395423	ENST00000453954		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000395423	ENST00000395423		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000395423	ENST00000588136		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000588136	ENST00000344749		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-3UTR	ENST00000588136	ENST00000262965		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000588136	ENST00000453954		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000588136	ENST00000395423		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000588136	ENST00000588136		ChiTaRS3.1			CN419071	TCF3	chr19	1610080	-	TCF3	chr19	1610764	-
intron-intron	ENST00000313835	ENST00000367178		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000313835	ENST00000461219		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000313835	ENST00000417268		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000313835	ENST00000367186		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000454423	ENST00000367178		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000454423	ENST00000461219		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000454423	ENST00000417268		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000454423	ENST00000367186		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000534502	ENST00000367178		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000534502	ENST00000461219		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000534502	ENST00000417268		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000534502	ENST00000367186		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000462900	ENST00000367178		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000462900	ENST00000461219		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000462900	ENST00000417268		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000462900	ENST00000367186		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000478703	ENST00000367178		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000478703	ENST00000461219		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000478703	ENST00000417268		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-intron	ENST00000478703	ENST00000367186		ChiTaRS3.1			AW945781	GPR89A	chr1	145774114	-	SCAF8	chr6	155057705	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911961	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911961	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911961	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911961	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000316020	ENST00000316020		ChiTaRS3.1			AF548121	OFCC1	chr6	9897104	-	OFCC1	chr6	9845750	+
intron-intron	ENST00000316020	ENST00000472329		ChiTaRS3.1			AF548121	OFCC1	chr6	9897104	-	OFCC1	chr6	9845750	+
intron-intron	ENST00000472329	ENST00000316020		ChiTaRS3.1			AF548121	OFCC1	chr6	9897104	-	OFCC1	chr6	9845750	+
intron-intron	ENST00000472329	ENST00000472329		ChiTaRS3.1			AF548121	OFCC1	chr6	9897104	-	OFCC1	chr6	9845750	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582481	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000532984	ENST00000532984		ChiTaRS3.1			N95601	FXYD6-FXYD2	chr11	117707778	+	FXYD6-FXYD2	chr11	117708044	-
intron-intron	ENST00000395863	ENST00000321560		ChiTaRS3.1			BI053091	BMP7	chr20	55745997	-	PLD6	chr17	17134833	-
intron-intron	ENST00000395864	ENST00000321560		ChiTaRS3.1			BI053091	BMP7	chr20	55745997	-	PLD6	chr17	17134833	-
intron-intron	ENST00000450594	ENST00000321560		ChiTaRS3.1			BI053091	BMP7	chr20	55745997	-	PLD6	chr17	17134833	-
intron-intron	ENST00000460817	ENST00000321560		ChiTaRS3.1			BI053091	BMP7	chr20	55745997	-	PLD6	chr17	17134833	-
intron-3UTR	ENST00000300006	ENST00000317897		ChiTaRS3.1			BF874511	C16orf45	chr16	15554368	+	MAGEF1	chr3	184428476	-
intron-3UTR	ENST00000566490	ENST00000317897		ChiTaRS3.1			BF874511	C16orf45	chr16	15554368	+	MAGEF1	chr3	184428476	-
intron-3UTR	ENST00000452191	ENST00000317897		ChiTaRS3.1			BF874511	C16orf45	chr16	15554368	+	MAGEF1	chr3	184428476	-
intron-3UTR	ENST00000561692	ENST00000317897		ChiTaRS3.1			BF874511	C16orf45	chr16	15554368	+	MAGEF1	chr3	184428476	-
intron-3UTR	ENST00000565913	ENST00000317897		ChiTaRS3.1			BF874511	C16orf45	chr16	15554368	+	MAGEF1	chr3	184428476	-
intron-intron	ENST00000409592	ENST00000492220		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000409592	ENST00000401000		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000409592	ENST00000539519		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000409592	ENST00000369067		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000409592	ENST00000369068		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000258390	ENST00000492220		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000258390	ENST00000401000		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000258390	ENST00000539519		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000258390	ENST00000369067		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000258390	ENST00000369068		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000474102	ENST00000492220		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000474102	ENST00000401000		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000474102	ENST00000539519		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000474102	ENST00000369067		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000474102	ENST00000369068		ChiTaRS3.1			AI351191	DOCK10	chr2	225719792	-	RPRD2	chr1	150376618	+
intron-intron	ENST00000397861	ENST00000397861		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397861	ENST00000397862		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397861	ENST00000575658		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397861	ENST00000487705		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397862	ENST00000397861		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397862	ENST00000397862		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397862	ENST00000575658		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000397862	ENST00000487705		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000575658	ENST00000397861		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000575658	ENST00000397862		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000575658	ENST00000575658		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000575658	ENST00000487705		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000487705	ENST00000397861		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000487705	ENST00000397862		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000487705	ENST00000575658		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
intron-intron	ENST00000487705	ENST00000487705		ChiTaRS3.1			AK130821	C17orf67	chr17	54906902	-	C17orf67	chr17	54909418	-
5CDS-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425244	BCR	chr22	23632564	+	ABL1	chr9	133614220	+
5CDS-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425244	BCR	chr22	23632564	+	ABL1	chr9	133614220	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425244	BCR	chr22	23632564	+	ABL1	chr9	133614220	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425244	BCR	chr22	23632564	+	ABL1	chr9	133614220	+
intron-intron	ENST00000342239	ENST00000319264		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000342239	ENST00000489107		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000324109	ENST00000319264		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000324109	ENST00000489107		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000543621	ENST00000319264		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000543621	ENST00000489107		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000540316	ENST00000319264		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000540316	ENST00000489107		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000472036	ENST00000319264		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-intron	ENST00000472036	ENST00000489107		ChiTaRS3.1			AU120581	DNMBP	chr10	101697184	-	LURAP1L	chr9	12816067	+
intron-3UTR	ENST00000171887	ENST00000171887		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000171887	ENST00000419504		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000171887	ENST00000430930		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000171887	ENST00000310858		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000171887	ENST00000480665		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-3UTR	ENST00000419504	ENST00000171887		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000419504	ENST00000419504		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000419504	ENST00000430930		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000419504	ENST00000310858		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000419504	ENST00000480665		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-3UTR	ENST00000430930	ENST00000171887		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000430930	ENST00000419504		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000430930	ENST00000430930		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000430930	ENST00000310858		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000430930	ENST00000480665		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-3UTR	ENST00000310858	ENST00000171887		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000310858	ENST00000419504		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000310858	ENST00000430930		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000310858	ENST00000310858		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000310858	ENST00000480665		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-3UTR	ENST00000480665	ENST00000171887		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000480665	ENST00000419504		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000480665	ENST00000430930		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000480665	ENST00000310858		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000480665	ENST00000480665		ChiTaRS3.1			AA496251	TNS1	chr2	218666833	-	TNS1	chr2	218667852	-
intron-intron	ENST00000487861	ENST00000489520		ChiTaRS3.1			AF044775	RAD51B	chr14	68949448	+	RPSAP52	chr12	66203279	+
intron-intron	ENST00000471583	ENST00000489520		ChiTaRS3.1			AF044775	RAD51B	chr14	68949448	+	RPSAP52	chr12	66203279	+
intron-intron	ENST00000487270	ENST00000489520		ChiTaRS3.1			AF044775	RAD51B	chr14	68949448	+	RPSAP52	chr12	66203279	+
intron-intron	ENST00000488612	ENST00000489520		ChiTaRS3.1			AF044775	RAD51B	chr14	68949448	+	RPSAP52	chr12	66203279	+
intron-intron	ENST00000390683	ENST00000489520		ChiTaRS3.1			AF044775	RAD51B	chr14	68949448	+	RPSAP52	chr12	66203279	+
intron-intron	ENST00000469165	ENST00000489520		ChiTaRS3.1			AF044775	RAD51B	chr14	68949448	+	RPSAP52	chr12	66203279	+
intron-3CDS	ENST00000460467	ENST00000380637		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000460467	ENST00000380634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000460467	ENST00000458295		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000460467	ENST00000380631		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000460467	ENST00000333634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000396755	ENST00000380637		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000396755	ENST00000380634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000396755	ENST00000458295		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000396755	ENST00000380631		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000396755	ENST00000333634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000418129	ENST00000380637		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000418129	ENST00000380634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000418129	ENST00000458295		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000418129	ENST00000380631		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000418129	ENST00000333634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000432376	ENST00000380637		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000432376	ENST00000380634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000432376	ENST00000458295		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000432376	ENST00000380631		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3CDS	ENST00000432376	ENST00000333634		ChiTaRS3.1			BF574371	PLCL2	chr3	17066191	+	SH3BGR	chr21	40880928	+
intron-3UTR	ENST00000544021	ENST00000253408		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000544021	ENST00000588735		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000544021	ENST00000435360		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000544021	ENST00000586793		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000544021	ENST00000591327		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-3UTR	ENST00000266556	ENST00000253408		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000266556	ENST00000588735		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000266556	ENST00000435360		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000266556	ENST00000586793		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000266556	ENST00000591327		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-3UTR	ENST00000545700	ENST00000253408		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000545700	ENST00000588735		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000545700	ENST00000435360		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000545700	ENST00000586793		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000545700	ENST00000591327		ChiTaRS3.1			BF933091	TAPBPL	chr12	6579843	+	GFAP	chr17	42983401	-
intron-intron	ENST00000409790	ENST00000372811		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409790	ENST00000420632		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409790	ENST00000372809		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409790	ENST00000480630		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409552	ENST00000372811		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409552	ENST00000420632		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409552	ENST00000372809		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000409552	ENST00000480630		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000465491	ENST00000372811		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000465491	ENST00000420632		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000465491	ENST00000372809		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000465491	ENST00000480630		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000381822	ENST00000372811		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000381822	ENST00000420632		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000381822	ENST00000372809		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-intron	ENST00000381822	ENST00000480630		ChiTaRS3.1			AI914591	CLEC16A	chr16	11147002	-	MFSD2A	chr1	40423375	+
intron-3CDS	ENST00000335953	ENST00000404141		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-3CDS	ENST00000335953	ENST00000397192		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-5UTR	ENST00000335953	ENST00000473219		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-3CDS	ENST00000392996	ENST00000404141		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-3CDS	ENST00000392996	ENST00000397192		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-5UTR	ENST00000392996	ENST00000473219		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-3CDS	ENST00000535379	ENST00000404141		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-3CDS	ENST00000535379	ENST00000397192		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-5UTR	ENST00000535379	ENST00000473219		ChiTaRS3.1			BG012561	ZBTB16	chr11	113977549	+	PAXIP1	chr7	154767916	+
intron-3CDS	ENST00000589977	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-3CDS	ENST00000589977	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000591571	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000586738	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588783	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586752	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586752	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586752	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
3UTR-3CDS	ENST00000588302	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000590964	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000590964	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000341249	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000341249	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000341249	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000588822	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000588822	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
In-frame	ENST00000586200	ENST00000589977		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000591571		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000586738		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000588783		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000586752		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000588302		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000590964		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000341249		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000588822		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
Frame-shit	ENST00000586200	ENST00000586200		ChiTaRS3.1			BU689941	METTL23	chr17	74729637	-	METTL23	chr17	74729420	+
intron-intron	ENST00000343348	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000343348	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000343348	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000257414	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000257414	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000257414	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000510263	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000510263	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000510263	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000513137	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000513137	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000513137	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000282394	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000282394	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000282394	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000503865	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000503865	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000503865	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000503962	ENST00000409592		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000503962	ENST00000258390		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-intron	ENST00000503962	ENST00000474102		ChiTaRS3.1			BM974321	SEMA6A	chr5	115785676	-	DOCK10	chr2	225699395	+
intron-3CDS	ENST00000221561	ENST00000318560		ChiTaRS3.1			AI571821	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3CDS	ENST00000327141	ENST00000318560		ChiTaRS3.1			AI571821	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3CDS	ENST00000592330	ENST00000318560		ChiTaRS3.1			AI571821	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3CDS	ENST00000586839	ENST00000318560		ChiTaRS3.1			AI571821	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-intron	ENST00000562955	ENST00000373001		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000562955	ENST00000474456		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000372442	ENST00000373001		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000372442	ENST00000474456		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000310739	ENST00000373001		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000310739	ENST00000474456		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000372450	ENST00000373001		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000372450	ENST00000474456		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000471177	ENST00000373001		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
intron-intron	ENST00000471177	ENST00000474456		ChiTaRS3.1			BQ337511	SZT2	chr1	43918421	+	RRAGC	chr1	39308821	-
3UTR-3UTR	ENST00000373874	ENST00000373874		ChiTaRS3.1			BM129681	TGIF2	chr20	35221872	-	TGIF2	chr20	35221913	+
3UTR-3UTR	ENST00000373874	ENST00000373872		ChiTaRS3.1			BM129681	TGIF2	chr20	35221872	-	TGIF2	chr20	35221913	+
3UTR-3UTR	ENST00000373872	ENST00000373874		ChiTaRS3.1			BM129681	TGIF2	chr20	35221872	-	TGIF2	chr20	35221913	+
3UTR-3UTR	ENST00000373872	ENST00000373872		ChiTaRS3.1			BM129681	TGIF2	chr20	35221872	-	TGIF2	chr20	35221913	+
3UTR-3UTR	ENST00000379198	ENST00000379198		ChiTaRS3.1			AI347131	B3GALT6	chr1	1169332	-	B3GALT6	chr1	1170009	-
In-frame	ENST00000355059	ENST00000355059		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000355059	ENST00000567959		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000355059	ENST00000564784		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000355059	ENST00000569035		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
intron-3CDS	ENST00000567959	ENST00000355059		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
intron-intron	ENST00000567959	ENST00000567959		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
intron-intron	ENST00000567959	ENST00000564784		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
intron-intron	ENST00000567959	ENST00000569035		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
In-frame	ENST00000564784	ENST00000355059		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000564784	ENST00000567959		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000564784	ENST00000564784		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000564784	ENST00000569035		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
In-frame	ENST00000569035	ENST00000355059		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000569035	ENST00000567959		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000569035	ENST00000564784		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
5CDS-intron	ENST00000569035	ENST00000569035		ChiTaRS3.1			AW860251	NEIL1	chr15	75646122	-	NEIL1	chr15	75647030	+
3UTR-intron	ENST00000373218	ENST00000490021		ChiTaRS3.1			BE091541	EIF4EBP2	chr10	72182728	-	GSTM1	chr1	110236002	-
3UTR-3UTR	ENST00000373218	ENST00000309851		ChiTaRS3.1			BE091541	EIF4EBP2	chr10	72182728	-	GSTM1	chr1	110236002	-
3UTR-3UTR	ENST00000373218	ENST00000369823		ChiTaRS3.1			BE091541	EIF4EBP2	chr10	72182728	-	GSTM1	chr1	110236002	-
3UTR-3UTR	ENST00000373218	ENST00000349334		ChiTaRS3.1			BE091541	EIF4EBP2	chr10	72182728	-	GSTM1	chr1	110236002	-
3UTR-intron	ENST00000373218	ENST00000483399		ChiTaRS3.1			BE091541	EIF4EBP2	chr10	72182728	-	GSTM1	chr1	110236002	-
3UTR-3UTR	ENST00000373218	ENST00000369819		ChiTaRS3.1			BE091541	EIF4EBP2	chr10	72182728	-	GSTM1	chr1	110236002	-
3UTR-3UTR	ENST00000376929	ENST00000376929		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000376929	ENST00000506690		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000376929	ENST00000389805		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000376929	ENST00000402874		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000376929	ENST00000510187		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000376929	ENST00000360718		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-3UTR	ENST00000506690	ENST00000376929		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-intron	ENST00000506690	ENST00000506690		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-3UTR	ENST00000506690	ENST00000389805		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-intron	ENST00000506690	ENST00000402874		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-intron	ENST00000506690	ENST00000510187		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-intron	ENST00000506690	ENST00000360718		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000389805	ENST00000376929		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000389805	ENST00000506690		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000389805	ENST00000389805		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000389805	ENST00000402874		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000389805	ENST00000510187		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000389805	ENST00000360718		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000402874	ENST00000376929		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000402874	ENST00000506690		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000402874	ENST00000389805		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000402874	ENST00000402874		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000402874	ENST00000510187		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000402874	ENST00000360718		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000510187	ENST00000376929		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000510187	ENST00000506690		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000510187	ENST00000389805		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000510187	ENST00000402874		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000510187	ENST00000510187		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000510187	ENST00000360718		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000360718	ENST00000376929		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000360718	ENST00000506690		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-3UTR	ENST00000360718	ENST00000389805		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000360718	ENST00000402874		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000360718	ENST00000510187		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
3UTR-intron	ENST00000360718	ENST00000360718		ChiTaRS3.1			BU727331	SQSTM1	chr5	179264200	-	SQSTM1	chr5	179264765	+
intron-intron	ENST00000325321	ENST00000325321		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000325321	ENST00000391810		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000325321	ENST00000358049		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000325321	ENST00000597509		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000391810	ENST00000325321		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000391810	ENST00000391810		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000391810	ENST00000358049		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000391810	ENST00000597509		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000358049	ENST00000325321		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000358049	ENST00000391810		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000358049	ENST00000358049		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000358049	ENST00000597509		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000597509	ENST00000325321		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000597509	ENST00000391810		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000597509	ENST00000358049		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
intron-intron	ENST00000597509	ENST00000597509		ChiTaRS3.1			BI047271	KLK2	chr19	51378392	-	KLK2	chr19	51379545	-
Frame-shit	ENST00000595618	ENST00000397899		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
5CDS-intron	ENST00000595618	ENST00000462314		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
Frame-shit	ENST00000594824	ENST00000397899		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
5CDS-intron	ENST00000594824	ENST00000462314		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
Frame-shit	ENST00000397274	ENST00000397899		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
5CDS-intron	ENST00000397274	ENST00000462314		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
intron-3CDS	ENST00000593411	ENST00000397899		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
intron-intron	ENST00000593411	ENST00000462314		ChiTaRS3.1			U42391	MYO9B	chr19	17322566	+	KIAA1211L	chr2	99438918	-
intron-3CDS	ENST00000260502	ENST00000343150		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000260502	ENST00000340342		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3UTR	ENST00000260502	ENST00000495822		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000260502	ENST00000342020		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000370244	ENST00000343150		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000370244	ENST00000340342		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3UTR	ENST00000370244	ENST00000495822		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000370244	ENST00000342020		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000370243	ENST00000343150		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000370243	ENST00000340342		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3UTR	ENST00000370243	ENST00000495822		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000370243	ENST00000342020		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000370247	ENST00000343150		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000370247	ENST00000340342		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3UTR	ENST00000370247	ENST00000495822		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000370247	ENST00000342020		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000539242	ENST00000343150		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000539242	ENST00000340342		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3UTR	ENST00000539242	ENST00000495822		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000539242	ENST00000342020		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000466632	ENST00000343150		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3CDS	ENST00000466632	ENST00000340342		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-3UTR	ENST00000466632	ENST00000495822		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000466632	ENST00000342020		ChiTaRS3.1			BG015981	BCAR3	chr1	94245905	+	CTSL	chr9	90345987	+
intron-intron	ENST00000427980	ENST00000370828		ChiTaRS3.1			AW195421	ATXN1L	chr16	71893823	+	GPC4	chrX	132532910	+
intron-intron	ENST00000427980	ENST00000535467		ChiTaRS3.1			AW195421	ATXN1L	chr16	71893823	+	GPC4	chrX	132532910	+
intron-intron	ENST00000569119	ENST00000370828		ChiTaRS3.1			AW195421	ATXN1L	chr16	71893823	+	GPC4	chrX	132532910	+
intron-intron	ENST00000569119	ENST00000535467		ChiTaRS3.1			AW195421	ATXN1L	chr16	71893823	+	GPC4	chrX	132532910	+
intron-intron	ENST00000298310	ENST00000298310		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000298310	ENST00000382135		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000298310	ENST00000545773		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000298310	ENST00000556925		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000298310	ENST00000546046		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000298310	ENST00000556672		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000382135	ENST00000298310		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000382135	ENST00000382135		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000382135	ENST00000545773		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000382135	ENST00000556925		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000382135	ENST00000546046		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000382135	ENST00000556672		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000545773	ENST00000298310		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000545773	ENST00000382135		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000545773	ENST00000545773		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000545773	ENST00000556925		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000545773	ENST00000546046		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000545773	ENST00000556672		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556925	ENST00000298310		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556925	ENST00000382135		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556925	ENST00000545773		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556925	ENST00000556925		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556925	ENST00000546046		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556925	ENST00000556672		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000546046	ENST00000298310		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000546046	ENST00000382135		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000546046	ENST00000545773		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000546046	ENST00000556925		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000546046	ENST00000546046		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000546046	ENST00000556672		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556672	ENST00000298310		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556672	ENST00000382135		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556672	ENST00000545773		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556672	ENST00000556925		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556672	ENST00000546046		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000556672	ENST00000556672		ChiTaRS3.1			W56211	NEMF	chr14	50088711	-	NEMF	chr14	50088780	+
intron-intron	ENST00000356495	ENST00000358781		ChiTaRS3.1			CD723341	PIGR	chr1	207101910	+	FAM3D	chr3	58643475	-
intron-intron	ENST00000487208	ENST00000358781		ChiTaRS3.1			CD723341	PIGR	chr1	207101910	+	FAM3D	chr3	58643475	-
intron-intron	ENST00000438925	ENST00000295373		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000438925	ENST00000479345		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000370782	ENST00000295373		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000370782	ENST00000479345		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000327238	ENST00000295373		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000327238	ENST00000479345		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000327277	ENST00000295373		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000327277	ENST00000479345		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000355839	ENST00000295373		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000355839	ENST00000479345		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000483626	ENST00000295373		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-intron	ENST00000483626	ENST00000479345		ChiTaRS3.1			BF844351	MMS19	chr10	99227426	-	DHX57	chr2	39079294	-
intron-3CDS	ENST00000339399	ENST00000377869		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-3CDS	ENST00000339399	ENST00000220616		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-3CDS	ENST00000339399	ENST00000542445		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-intron	ENST00000339399	ENST00000519543		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-intron	ENST00000339399	ENST00000522523		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-3CDS	ENST00000473205	ENST00000377869		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-3CDS	ENST00000473205	ENST00000220616		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-3CDS	ENST00000473205	ENST00000542445		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-intron	ENST00000473205	ENST00000519543		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-intron	ENST00000473205	ENST00000522523		ChiTaRS3.1			AU141421	ANP32B	chr9	100771382	+	TG	chr8	133961126	+
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF336731	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-intron	ENST00000396368	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000396368	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000396368	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000540441	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000540441	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000540441	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000344181	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000344181	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000344181	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000551742	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000551742	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000551742	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000602337	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000602337	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000602337	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000548025	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000548025	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000548025	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000547936	ENST00000357668		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000547936	ENST00000518721		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000547936	ENST00000520625		ChiTaRS3.1			BI026371	KIAA0430	chr16	15688521	+	ASAP1	chr8	131261733	+
intron-intron	ENST00000326153	ENST00000408742		ChiTaRS3.1			Y14391	GTPBP6	chrY	171426	-	MIR548N	chr2	179506226	-
intron-intron	ENST00000367194	ENST00000357710		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000324501		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000344094		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000261970		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000394164		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000557511		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000406768		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000394157		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000553447		ChiTaRS3.1			BI055891	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-5UTR	ENST00000346178	ENST00000367941		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000346178	ENST00000367937		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-intron	ENST00000346178	ENST00000448348		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000356638	ENST00000367941		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000356638	ENST00000367937		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-intron	ENST00000356638	ENST00000448348		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000534779	ENST00000367941		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000534779	ENST00000367937		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-intron	ENST00000534779	ENST00000448348		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000540933	ENST00000367941		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000540933	ENST00000367937		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-intron	ENST00000540933	ENST00000448348		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000534422	ENST00000367941		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-5UTR	ENST00000534422	ENST00000367937		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-intron	ENST00000534422	ENST00000448348		ChiTaRS3.1			BF085691	GANAB	chr11	62408987	+	STX7	chr6	132824675	+
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			BF852721	NEAT1	chr11	65203808	+	NEAT1	chr11	65203654	-
3UTR-intron	ENST00000322611	ENST00000316629		ChiTaRS3.1			BE695901	BASP1	chr5	17276229	-	CDK1	chr10	62543880	+
3UTR-intron	ENST00000322611	ENST00000395284		ChiTaRS3.1			BE695901	BASP1	chr5	17276229	-	CDK1	chr10	62543880	+
3UTR-intron	ENST00000322611	ENST00000519760		ChiTaRS3.1			BE695901	BASP1	chr5	17276229	-	CDK1	chr10	62543880	+
3UTR-intron	ENST00000322611	ENST00000448257		ChiTaRS3.1			BE695901	BASP1	chr5	17276229	-	CDK1	chr10	62543880	+
3UTR-intron	ENST00000322611	ENST00000373809		ChiTaRS3.1			BE695901	BASP1	chr5	17276229	-	CDK1	chr10	62543880	+
5UTR-3CDS	ENST00000379028	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000379028	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000413765	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000351718	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000379024	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000379022	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-5UTR	ENST00000425651	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000426128		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000388728		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000257694		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000422087		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000453144		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000436062		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-5UTR	ENST00000522550	ENST00000483879		ChiTaRS3.1			DB477711	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-intron	ENST00000549115	ENST00000389395		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000549115	ENST00000398558		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000549115	ENST00000355415		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000549115	ENST00000591878		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000607599	ENST00000389395		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000607599	ENST00000398558		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000607599	ENST00000355415		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000607599	ENST00000591878		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000548752	ENST00000389395		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000548752	ENST00000398558		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000548752	ENST00000355415		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000548752	ENST00000591878		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000359118	ENST00000389395		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000359118	ENST00000398558		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000359118	ENST00000355415		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000359118	ENST00000591878		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000552002	ENST00000389395		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000552002	ENST00000398558		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000552002	ENST00000355415		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
intron-intron	ENST00000552002	ENST00000591878		ChiTaRS3.1			BG951551	CHURC1	chr14	65406444	+	MFSD12	chr19	3556625	+
5CDS-5UTR	ENST00000355413	ENST00000482954		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000476279		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000247866		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000355413	ENST00000461457		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000355413	ENST00000465506		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000355413	ENST00000464564		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000355413	ENST00000204307		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000460088		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000472695		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000476470		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000471136		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000355413	ENST00000475276		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000482954		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000476279		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000247866		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000473247	ENST00000461457		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000473247	ENST00000465506		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000473247	ENST00000464564		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000473247	ENST00000204307		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000460088		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000472695		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000476470		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000471136		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000473247	ENST00000475276		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000482954		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000476279		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000247866		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-intron	ENST00000495028	ENST00000461457		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-intron	ENST00000495028	ENST00000465506		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-3UTR	ENST00000495028	ENST00000464564		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-3UTR	ENST00000495028	ENST00000204307		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000460088		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000472695		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000476470		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000471136		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
3UTR-5UTR	ENST00000495028	ENST00000475276		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000482954		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000476279		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000247866		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000535825	ENST00000461457		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000535825	ENST00000465506		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000535825	ENST00000464564		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000535825	ENST00000204307		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000460088		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000472695		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000476470		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000471136		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000535825	ENST00000475276		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000482954		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000476279		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000247866		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000492693	ENST00000461457		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-intron	ENST00000492693	ENST00000465506		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000492693	ENST00000464564		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-3UTR	ENST00000492693	ENST00000204307		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000460088		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000472695		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000476470		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000471136		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
5CDS-5UTR	ENST00000492693	ENST00000475276		ChiTaRS3.1			CB993911	AGK	chr7	141255367	+	NDUFB2	chr7	140402665	+
intron-intron	ENST00000298912	ENST00000298912		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000298912	ENST00000557215		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000298912	ENST00000556441		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000557215	ENST00000298912		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000557215	ENST00000557215		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000557215	ENST00000556441		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000556441	ENST00000298912		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000556441	ENST00000557215		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
intron-intron	ENST00000556441	ENST00000556441		ChiTaRS3.1			BG010371	CLMN	chr14	95711131	+	CLMN	chr14	95711015	-
Frame-shit	ENST00000337002	ENST00000337002		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
Frame-shit	ENST00000337002	ENST00000480708		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
5CDS-intron	ENST00000337002	ENST00000470355		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
Frame-shit	ENST00000480708	ENST00000337002		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
Frame-shit	ENST00000480708	ENST00000480708		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
5CDS-intron	ENST00000480708	ENST00000470355		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
3UTR-3CDS	ENST00000470355	ENST00000337002		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
3UTR-3CDS	ENST00000470355	ENST00000480708		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
3UTR-intron	ENST00000470355	ENST00000470355		ChiTaRS3.1			BC105971	SEC62	chr3	169706153	+	SEC62	chr3	169693395	+
intron-intron	ENST00000428869	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000428869	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000428869	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000428869	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000428869	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000431965	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000431965	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000431965	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000431965	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000431965	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000256425	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000256425	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000256425	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000256425	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000256425	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000588444	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000588444	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000588444	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000588444	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000588444	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000436348	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000436348	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000436348	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000436348	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000436348	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000398439	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000398439	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000398439	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000398439	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000398439	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000587291	ENST00000335670		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000587291	ENST00000309157		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000587291	ENST00000261523		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000587291	ENST00000449337		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-intron	ENST00000587291	ENST00000560004		ChiTaRS3.1			BF091671	MRO	chr18	48321742	-	RORA	chr15	61474188	-
intron-3UTR	ENST00000409185	ENST00000409185		ChiTaRS3.1			CA311681	FAM168B	chr2	131805603	+	FAM168B	chr2	131805824	-
intron-intron	ENST00000409185	ENST00000389915		ChiTaRS3.1			CA311681	FAM168B	chr2	131805603	+	FAM168B	chr2	131805824	-
intron-3UTR	ENST00000389915	ENST00000409185		ChiTaRS3.1			CA311681	FAM168B	chr2	131805603	+	FAM168B	chr2	131805824	-
intron-intron	ENST00000389915	ENST00000389915		ChiTaRS3.1			CA311681	FAM168B	chr2	131805603	+	FAM168B	chr2	131805824	-
5UTR-intron	ENST00000360540	ENST00000538689		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000220584		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000446331		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000443614		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000525900		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000528812		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000530664		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000528643		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000360540	ENST00000525777		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000538689		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000220584		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000446331		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000443614		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000525900		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000528812		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000530664		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000528643		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5CDS-intron	ENST00000544451	ENST00000525777		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000538689		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000220584		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000446331		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000443614		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000525900		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000528812		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000530664		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000528643		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000519559	ENST00000525777		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000538689		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000220584		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000446331		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000443614		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000525900		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000528812		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000530664		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000528643		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000522514	ENST00000525777		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000538689		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000220584		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000446331		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000443614		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000525900		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000528812		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000530664		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000528643		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
5UTR-intron	ENST00000521344	ENST00000525777		ChiTaRS3.1			N34721	PCMTD1	chr8	52811489	-	FDFT1	chr8	11666293	+
intron-3CDS	ENST00000282470	ENST00000282470		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000282470	ENST00000418378		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000282470	ENST00000503414		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000418378	ENST00000282470		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000418378	ENST00000418378		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000418378	ENST00000503414		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000503414	ENST00000282470		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000503414	ENST00000418378		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-3CDS	ENST00000503414	ENST00000503414		ChiTaRS3.1			BE856511	SPARCL1	chr4	88415325	+	SPARCL1	chr4	88414978	+
intron-intron	ENST00000336148	ENST00000476233		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000336148	ENST00000354667		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000336148	ENST00000356674		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000519348	ENST00000476233		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000519348	ENST00000354667		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000519348	ENST00000356674		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000297592	ENST00000476233		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000297592	ENST00000354667		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000297592	ENST00000356674		ChiTaRS3.1			BF916091	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000540746	ENST00000540746		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
intron-3UTR	ENST00000540746	ENST00000544216		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
intron-3UTR	ENST00000540746	ENST00000433627		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
3UTR-intron	ENST00000544216	ENST00000540746		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
3UTR-3UTR	ENST00000544216	ENST00000544216		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
3UTR-3UTR	ENST00000544216	ENST00000433627		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
3UTR-intron	ENST00000433627	ENST00000540746		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
3UTR-3UTR	ENST00000433627	ENST00000544216		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
3UTR-3UTR	ENST00000433627	ENST00000433627		ChiTaRS3.1			BI870881	LSM14A	chr19	34719843	-	LSM14A	chr19	34719872	+
intron-3CDS	ENST00000348956	ENST00000370915		ChiTaRS3.1			AW847911	CKB	chr14	103988480	+	LSM14B	chr20	60701377	+
intron-3CDS	ENST00000348956	ENST00000253001		ChiTaRS3.1			AW847911	CKB	chr14	103988480	+	LSM14B	chr20	60701377	+
intron-3CDS	ENST00000348956	ENST00000279068		ChiTaRS3.1			AW847911	CKB	chr14	103988480	+	LSM14B	chr20	60701377	+
intron-5UTR	ENST00000263915	ENST00000263915		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-intron	ENST00000263915	ENST00000543549		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-intron	ENST00000263915	ENST00000497306		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-5UTR	ENST00000543549	ENST00000263915		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-intron	ENST00000543549	ENST00000543549		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-intron	ENST00000543549	ENST00000497306		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-5UTR	ENST00000497306	ENST00000263915		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-intron	ENST00000497306	ENST00000543549		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-intron	ENST00000497306	ENST00000497306		ChiTaRS3.1			DA571601	GRB14	chr2	165353566	-	GRB14	chr2	165478023	-
intron-3UTR	ENST00000390548	ENST00000320892		ChiTaRS3.1			DB304421	IGHG1	chr22	22675303	-	RNF144A	chr2	7181819	-
intron-intron	ENST00000390548	ENST00000467276		ChiTaRS3.1			DB304421	IGHG1	chr22	22675303	-	RNF144A	chr2	7181819	-
intron-3CDS	ENST00000265983	ENST00000409478		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000265983	ENST00000329971		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000265983	ENST00000264160		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000265983	ENST00000410054		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000265983	ENST00000409606		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3UTR	ENST00000265983	ENST00000443537		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000525057	ENST00000409478		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000525057	ENST00000329971		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000525057	ENST00000264160		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000525057	ENST00000410054		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3CDS	ENST00000525057	ENST00000409606		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-3UTR	ENST00000525057	ENST00000443537		ChiTaRS3.1			H95581	HPX	chr11	6452330	+	R3HDM1	chr2	136403065	-
intron-intron	ENST00000406486	ENST00000406486		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000406486	ENST00000358431		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000406486	ENST00000401395		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000358431	ENST00000406486		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000358431	ENST00000358431		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000358431	ENST00000401395		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000401395	ENST00000406486		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000401395	ENST00000358431		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-intron	ENST00000401395	ENST00000401395		ChiTaRS3.1			CV325121	KIAA1671	chr22	25520301	+	KIAA1671	chr22	25520201	-
intron-3CDS	ENST00000346128	ENST00000346128		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000346128	ENST00000400011		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000346128	ENST00000356107		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000346128	ENST00000545208		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000346128	ENST00000495972		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000400011	ENST00000346128		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000400011	ENST00000400011		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000400011	ENST00000356107		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000400011	ENST00000545208		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000400011	ENST00000495972		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000356107	ENST00000346128		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000356107	ENST00000400011		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000356107	ENST00000356107		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000356107	ENST00000545208		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000356107	ENST00000495972		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000545208	ENST00000346128		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000545208	ENST00000400011		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000545208	ENST00000356107		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000545208	ENST00000545208		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000545208	ENST00000495972		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000495972	ENST00000346128		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000495972	ENST00000400011		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000495972	ENST00000356107		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000495972	ENST00000545208		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-3CDS	ENST00000495972	ENST00000495972		ChiTaRS3.1			BI060381	TJP1	chr15	30058562	-	TJP1	chr15	30065460	-
intron-intron	ENST00000360416	ENST00000434513		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000361221		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000452522		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000375415		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000375420		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000469726		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000375408		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000167825		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000434513		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000361221		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000452522		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000375415		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000375420		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000469726		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000375408		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000167825		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000434513		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000361221		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000452522		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000375415		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000375420		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000469726		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000375408		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000167825		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000434513		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000361221		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000452522		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000375415		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000375420		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000469726		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000375408		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000167825		ChiTaRS3.1			T17401	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000368226	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368226	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368227	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000532331	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368213	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368210	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368215	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000368207	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000524481	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000368226		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000368227		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000532331		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000368213		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000368210		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000368215		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000368207		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000524481		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-intron	ENST00000525459	ENST00000525459		ChiTaRS3.1			AW854661	PTPRK	chr6	128744127	+	PTPRK	chr6	128744081	-
intron-3CDS	ENST00000339697	ENST00000339697		ChiTaRS3.1			BE177841	SERINC1	chr6	122779783	+	SERINC1	chr6	122766282	+
intron-5UTR	ENST00000393704	ENST00000337664		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393704	ENST00000509167		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393704	ENST00000515480		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393704	ENST00000353187		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
5UTR-5UTR	ENST00000361618	ENST00000337664		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
5UTR-5UTR	ENST00000361618	ENST00000509167		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
5UTR-5UTR	ENST00000361618	ENST00000515480		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
5UTR-5UTR	ENST00000361618	ENST00000353187		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393702	ENST00000337664		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393702	ENST00000509167		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393702	ENST00000515480		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000393702	ENST00000353187		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000506110	ENST00000337664		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000506110	ENST00000509167		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000506110	ENST00000515480		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000506110	ENST00000353187		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000514683	ENST00000337664		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000514683	ENST00000509167		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000514683	ENST00000515480		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-5UTR	ENST00000514683	ENST00000353187		ChiTaRS3.1			CF593501	MFAP3L	chr4	170947385	-	AADAT	chr4	171010889	-
intron-intron	ENST00000368679	ENST00000392627		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368679	ENST00000342648		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368679	ENST00000481232		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368679	ENST00000392629		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368679	ENST00000582873		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368676	ENST00000392627		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368676	ENST00000342648		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368676	ENST00000481232		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368676	ENST00000392629		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000368676	ENST00000582873		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000467145	ENST00000392627		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000467145	ENST00000342648		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000467145	ENST00000481232		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000467145	ENST00000392629		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
intron-intron	ENST00000467145	ENST00000582873		ChiTaRS3.1			BF368961	ADAM12	chr10	127824508	+	GPRC5C	chr17	72432741	+
3UTR-3UTR	ENST00000377107	ENST00000400068		ChiTaRS3.1			T74731	USP11	chrX	47107542	+	SIRPA	chr20	1918906	+
3UTR-3UTR	ENST00000377107	ENST00000356025		ChiTaRS3.1			T74731	USP11	chrX	47107542	+	SIRPA	chr20	1918906	+
3UTR-3UTR	ENST00000377107	ENST00000358771		ChiTaRS3.1			T74731	USP11	chrX	47107542	+	SIRPA	chr20	1918906	+
3UTR-3UTR	ENST00000218348	ENST00000400068		ChiTaRS3.1			T74731	USP11	chrX	47107542	+	SIRPA	chr20	1918906	+
3UTR-3UTR	ENST00000218348	ENST00000356025		ChiTaRS3.1			T74731	USP11	chrX	47107542	+	SIRPA	chr20	1918906	+
3UTR-3UTR	ENST00000218348	ENST00000358771		ChiTaRS3.1			T74731	USP11	chrX	47107542	+	SIRPA	chr20	1918906	+
3UTR-3UTR	ENST00000358598	ENST00000358598		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000358598	ENST00000392711		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000358598	ENST00000589228		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000358598	ENST00000536854		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000358598	ENST00000586397		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000358598	ENST00000588188		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000392711	ENST00000358598		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000392711	ENST00000392711		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000392711	ENST00000589228		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000392711	ENST00000536854		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000392711	ENST00000586397		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000392711	ENST00000588188		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000589228	ENST00000358598		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000589228	ENST00000392711		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000589228	ENST00000589228		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000589228	ENST00000536854		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000589228	ENST00000586397		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000589228	ENST00000588188		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000536854	ENST00000358598		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000536854	ENST00000392711		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000536854	ENST00000589228		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-3UTR	ENST00000536854	ENST00000536854		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000536854	ENST00000586397		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
3UTR-intron	ENST00000536854	ENST00000588188		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000586397	ENST00000358598		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000586397	ENST00000392711		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000586397	ENST00000589228		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000586397	ENST00000536854		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-intron	ENST00000586397	ENST00000586397		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-intron	ENST00000586397	ENST00000588188		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000588188	ENST00000358598		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000588188	ENST00000392711		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000588188	ENST00000589228		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-3UTR	ENST00000588188	ENST00000536854		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-intron	ENST00000588188	ENST00000586397		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-intron	ENST00000588188	ENST00000588188		ChiTaRS3.1			AA508561	PRKAR1A	chr17	66527977	+	PRKAR1A	chr17	66528006	-
intron-intron	ENST00000538442	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000538442	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000538442	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000399150	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000399150	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000399150	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000252229	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000252229	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000252229	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000427115	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000427115	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000427115	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000442104	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000442104	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000442104	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000451603	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000451603	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000451603	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000546706	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000546706	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000546706	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000438954	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000438954	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000438954	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000458032	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000458032	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000458032	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551950	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551950	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551950	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000437651	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000437651	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000437651	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000383514	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000383514	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000383514	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551608	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551608	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551608	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000436531	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000436531	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000436531	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000436655	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000436655	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000436655	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000547574	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000547574	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000547574	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000400313	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000400313	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000400313	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000428416	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000428416	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000428416	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000549014	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000549014	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000549014	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000428059	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000428059	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000428059	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000451789	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000451789	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000451789	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000443156	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000443156	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000443156	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551960	ENST00000414786		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551960	ENST00000445220		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
intron-intron	ENST00000551960	ENST00000262795		ChiTaRS3.1			BG983591	MICB	chr6	2618147	+	SHANK3	chr22	51161956	-
5CDS-intron	ENST00000600428	ENST00000396024		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000600428	ENST00000451270		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000600428	ENST00000332680		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000600428	ENST00000421017		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000600428	ENST00000557937		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
intron-intron	ENST00000596543	ENST00000396024		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
intron-intron	ENST00000596543	ENST00000451270		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
intron-intron	ENST00000596543	ENST00000332680		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
intron-intron	ENST00000596543	ENST00000421017		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
intron-intron	ENST00000596543	ENST00000557937		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313285	ENST00000396024		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313285	ENST00000451270		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313285	ENST00000332680		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313285	ENST00000421017		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313285	ENST00000557937		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313244	ENST00000396024		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313244	ENST00000451270		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313244	ENST00000332680		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313244	ENST00000421017		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000313244	ENST00000557937		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000596758	ENST00000396024		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000596758	ENST00000451270		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000596758	ENST00000332680		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000596758	ENST00000421017		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-intron	ENST00000596758	ENST00000557937		ChiTaRS3.1			BQ427761	TRIP10	chr19	6744637	-	ANXA2	chr9	33624940	+
5CDS-3UTR	ENST00000278826	ENST00000209875		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
5CDS-intron	ENST00000278826	ENST00000439541		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
5CDS-intron	ENST00000278826	ENST00000550411		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-3UTR	ENST00000542946	ENST00000209875		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-intron	ENST00000542946	ENST00000439541		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-intron	ENST00000542946	ENST00000550411		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-3UTR	ENST00000540194	ENST00000209875		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-intron	ENST00000540194	ENST00000439541		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-intron	ENST00000540194	ENST00000550411		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
5CDS-3UTR	ENST00000381787	ENST00000209875		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
5CDS-intron	ENST00000381787	ENST00000439541		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
5CDS-intron	ENST00000381787	ENST00000550411		ChiTaRS3.1			BG953951	TMEM138	chr11	61136159	+	CBX5	chr12	54633912	+
intron-intron	ENST00000412050	ENST00000429345		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000412050	ENST00000435641		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000412050	ENST00000447858		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000412050	ENST00000606992		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000412050	ENST00000607278		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000412050	ENST00000606044		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000265997	ENST00000429345		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000265997	ENST00000435641		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000265997	ENST00000447858		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000265997	ENST00000606992		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000265997	ENST00000607278		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000265997	ENST00000606044		ChiTaRS3.1			BE837631	CPEB3	chr10	93870322	-	LY86-AS1	chr6	6491981	-
intron-intron	ENST00000245907	ENST00000445937		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000531443		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000517566		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000452423		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000442977		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000521963		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000312046		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000449762		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000297447		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000521592		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000245907	ENST00000497705		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000445937		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000531443		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000517566		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000452423		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000442977		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000521963		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000312046		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000449762		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000297447		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000521592		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000599668	ENST00000497705		ChiTaRS3.1			AA056091	C3	chr19	6677902	+	OXR1	chr8	107452454	-
intron-intron	ENST00000434878	ENST00000405409		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000414461		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000449924		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000262829		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000397303		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000359369		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000416721		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000434878	ENST00000438146		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000405409		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000414461		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000449924		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000262829		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000397303		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000359369		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000416721		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000547077	ENST00000438146		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000405409		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000414461		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000449924		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000262829		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000397303		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000359369		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000416721		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000546988	ENST00000438146		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000405409		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000414461		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000449924		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000262829		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000397303		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000359369		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000416721		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000454527	ENST00000438146		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000405409		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000414461		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000449924		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000262829		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000397303		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000359369		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000416721		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000430651	ENST00000438146		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000405409		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000414461		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000449924		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000262829		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000397303		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000359369		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000416721		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
intron-intron	ENST00000456391	ENST00000438146		ChiTaRS3.1			AK026741	LBX1-AS1	chr10	102994678	+	RBFOX2	chr22	36234748	-
3UTR-3CDS	ENST00000336278	ENST00000286070		ChiTaRS3.1			DN913481	SNTB2	chr16	69339440	+	RBM45	chr2	178988364	+
3UTR-intron	ENST00000336278	ENST00000464647		ChiTaRS3.1			DN913481	SNTB2	chr16	69339440	+	RBM45	chr2	178988364	+
intron-3CDS	ENST00000528525	ENST00000286070		ChiTaRS3.1			DN913481	SNTB2	chr16	69339440	+	RBM45	chr2	178988364	+
intron-intron	ENST00000528525	ENST00000464647		ChiTaRS3.1			DN913481	SNTB2	chr16	69339440	+	RBM45	chr2	178988364	+
3UTR-3CDS	ENST00000375533	ENST00000375533		ChiTaRS3.1			AW152241	BAMBI	chr10	28971583	-	BAMBI	chr10	28971182	+
intron-intron	ENST00000355630	ENST00000382518		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000355630	ENST00000009180		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000355630	ENST00000382515		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000355630	ENST00000481267		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000382518		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000009180		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000382515		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000481267		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000382518		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000009180		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000382515		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000481267		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000382518		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000009180		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000382515		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000481267		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000382518		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000009180		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000382515		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000481267		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000382518		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000009180		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000382515		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000481267		ChiTaRS3.1			BF770241	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-3UTR	ENST00000442267	ENST00000442267		ChiTaRS3.1			BF893381	TBC1D9	chr4	141542841	-	TBC1D9	chr4	141543013	+
3UTR-intron	ENST00000534336	ENST00000305264		ChiTaRS3.1			AI133081	MALAT1	chr11	65268585	-	HDAC3	chr5	141008217	-
3UTR-intron	ENST00000534336	ENST00000469207		ChiTaRS3.1			AI133081	MALAT1	chr11	65268585	-	HDAC3	chr5	141008217	-
intron-intron	ENST00000417172	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000417172	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000417172	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000417172	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361388	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361388	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361388	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361388	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000422748	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000422748	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000422748	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000422748	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361675	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361675	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361675	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361675	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361901	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361901	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361901	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000361901	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000393118	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000393118	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000393118	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000393118	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000495522	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000495522	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000495522	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000495522	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000424922	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000424922	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000424922	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000424922	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000543443	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000543443	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000543443	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000543443	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000466704	ENST00000303113		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000466704	ENST00000453626		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000466704	ENST00000303071		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000466704	ENST00000432378		ChiTaRS3.1			BE836491	CALD1	chr7	134470134	+	DONSON	chr21	34994328	+
intron-intron	ENST00000265260	ENST00000220514		ChiTaRS3.1			BE080901	PCNP	chr3	101307347	-	OIP5	chr15	41614146	+
intron-intron	ENST00000469941	ENST00000220514		ChiTaRS3.1			BE080901	PCNP	chr3	101307347	-	OIP5	chr15	41614146	+
intron-intron	ENST00000296024	ENST00000220514		ChiTaRS3.1			BE080901	PCNP	chr3	101307347	-	OIP5	chr15	41614146	+
intron-intron	ENST00000486406	ENST00000220514		ChiTaRS3.1			BE080901	PCNP	chr3	101307347	-	OIP5	chr15	41614146	+
intron-3CDS	ENST00000361475	ENST00000361475		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000361475	ENST00000536701		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000361475	ENST00000536724		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-3CDS	ENST00000536701	ENST00000361475		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000536701	ENST00000536701		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000536701	ENST00000536724		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-3CDS	ENST00000536724	ENST00000361475		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000536724	ENST00000536701		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000536724	ENST00000536724		ChiTaRS3.1			BP287181	TGM2	chr20	36757747	-	TGM2	chr20	36784488	-
intron-intron	ENST00000508736	ENST00000336761		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
intron-intron	ENST00000508736	ENST00000233078		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
intron-intron	ENST00000508736	ENST00000586579		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000548825	ENST00000336761		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000548825	ENST00000233078		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000548825	ENST00000586579		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000261897	ENST00000336761		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000261897	ENST00000233078		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000261897	ENST00000586579		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000380281	ENST00000336761		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000380281	ENST00000233078		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
5CDS-intron	ENST00000380281	ENST00000586579		ChiTaRS3.1			BF932401	PRPF40B	chr12	50037502	-	DAZAP1	chr19	1422851	+
intron-3CDS	ENST00000176763	ENST00000176763		ChiTaRS3.1			CV378751	STK10	chr5	171491746	-	STK10	chr5	171517267	-
intron-intron	ENST00000176763	ENST00000517775		ChiTaRS3.1			CV378751	STK10	chr5	171491746	-	STK10	chr5	171517267	-
intron-3CDS	ENST00000517775	ENST00000176763		ChiTaRS3.1			CV378751	STK10	chr5	171491746	-	STK10	chr5	171517267	-
intron-intron	ENST00000517775	ENST00000517775		ChiTaRS3.1			CV378751	STK10	chr5	171491746	-	STK10	chr5	171517267	-
intron-intron	ENST00000373023	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373023	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373023	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000373023	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373023	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373023	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373023	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373026	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373026	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373026	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000373026	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373026	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373026	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373026	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373024	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373024	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373024	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000373024	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373024	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373024	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373024	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373021	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373021	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373021	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000373021	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373021	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373021	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373021	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373027	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373027	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373027	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000373027	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373027	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373027	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000373027	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000458109	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000458109	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000458109	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000458109	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000458109	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000458109	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000458109	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000467066	ENST00000373023		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000467066	ENST00000373026		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000467066	ENST00000373024		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-3UTR	ENST00000467066	ENST00000373021		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000467066	ENST00000373027		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000467066	ENST00000458109		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000467066	ENST00000467066		ChiTaRS3.1			AW364441	INPP5B	chr1	38384120	+	INPP5B	chr1	38394518	-
intron-intron	ENST00000370331	ENST00000560626		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000370331	ENST00000558305		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000370331	ENST00000567337		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000370331	ENST00000312493		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000560626		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000558305		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000567337		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000312493		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000560626		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000558305		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000567337		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000312493		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000560626		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000558305		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000567337		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000312493		ChiTaRS3.1			BE143631	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000346141	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000346141	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000346141	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000346141	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000346141	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000325752	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000325752	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000325752	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000325752	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000325752	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000340993	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000340993	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000340993	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000340993	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000340993	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000394239	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000394239	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000394239	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000394239	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000394239	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000592426	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000592426	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000592426	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000592426	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000592426	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000376094	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000376094	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000376094	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000376094	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000376094	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000539018	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000539018	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000539018	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000539018	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000539018	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000591611	ENST00000370345		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000591611	ENST00000494350		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000591611	ENST00000451524		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-5UTR	ENST00000591611	ENST00000535773		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
intron-intron	ENST00000591611	ENST00000370329		ChiTaRS3.1			CB123711	TUBD1	chr17	57962954	-	SEC31B	chr10	102289582	-
In-frame	ENST00000356805	ENST00000375759		ChiTaRS3.1			BE938281	SPTBN1	chr2	54853321	-	SPEN	chr1	16245519	+
5CDS-intron	ENST00000356805	ENST00000471538		ChiTaRS3.1			BE938281	SPTBN1	chr2	54853321	-	SPEN	chr1	16245519	+
In-frame	ENST00000333896	ENST00000375759		ChiTaRS3.1			BE938281	SPTBN1	chr2	54853321	-	SPEN	chr1	16245519	+
5CDS-intron	ENST00000333896	ENST00000471538		ChiTaRS3.1			BE938281	SPTBN1	chr2	54853321	-	SPEN	chr1	16245519	+
intron-intron	ENST00000357028	ENST00000357028		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000357028	ENST00000292035		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000357028	ENST00000474263		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000292035	ENST00000357028		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000292035	ENST00000292035		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000292035	ENST00000474263		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000474263	ENST00000357028		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000474263	ENST00000292035		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000474263	ENST00000474263		ChiTaRS3.1			CA391201	MED27	chr9	134773650	+	MED27	chr9	134752996	+
intron-intron	ENST00000388996	ENST00000370331		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000388996	ENST00000540033		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000388996	ENST00000543509		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000388996	ENST00000491940		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000370331		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000540033		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000543509		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000491940		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000370331		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000540033		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000543509		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000491940		ChiTaRS3.1			BF592861	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
5CDS-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050799	KMT2A	chr11	118355626	+	AFF1	chr4	88004293	+
5CDS-3UTR	ENST00000253693	ENST00000260641		ChiTaRS3.1			BE811631	CAPN7	chr3	15288912	+	ACTR2	chr2	65495891	+
5CDS-intron	ENST00000253693	ENST00000476840		ChiTaRS3.1			BE811631	CAPN7	chr3	15288912	+	ACTR2	chr2	65495891	+
5CDS-intron	ENST00000253693	ENST00000542850		ChiTaRS3.1			BE811631	CAPN7	chr3	15288912	+	ACTR2	chr2	65495891	+
5CDS-3UTR	ENST00000253693	ENST00000377982		ChiTaRS3.1			BE811631	CAPN7	chr3	15288912	+	ACTR2	chr2	65495891	+
intron-intron	ENST00000332509	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000332509	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000335539	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000402064	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000490473	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000436218	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000447598	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000435484	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000383737		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000395734		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000426837		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000360240		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000439356		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000264724		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000420772		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000441748		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000462206		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
intron-intron	ENST00000417303	ENST00000434267		ChiTaRS3.1			BQ300191	PLA2G6	chr22	38523889	-	MAP4	chr3	47917174	+
5CDS-intron	ENST00000399151	ENST00000399151		ChiTaRS3.1			R82141	DOPEY2	chr21	37633030	+	DOPEY2	chr21	37563506	-
5CDS-intron	ENST00000399151	ENST00000492760		ChiTaRS3.1			R82141	DOPEY2	chr21	37633030	+	DOPEY2	chr21	37563506	-
intron-intron	ENST00000492760	ENST00000399151		ChiTaRS3.1			R82141	DOPEY2	chr21	37633030	+	DOPEY2	chr21	37563506	-
intron-intron	ENST00000492760	ENST00000492760		ChiTaRS3.1			R82141	DOPEY2	chr21	37633030	+	DOPEY2	chr21	37563506	-
intron-3CDS	ENST00000255764	ENST00000282470		ChiTaRS3.1			CA433841	MED10	chr5	6377309	+	SPARCL1	chr4	88415745	-
intron-3CDS	ENST00000255764	ENST00000418378		ChiTaRS3.1			CA433841	MED10	chr5	6377309	+	SPARCL1	chr4	88415745	-
intron-5UTR	ENST00000255764	ENST00000503414		ChiTaRS3.1			CA433841	MED10	chr5	6377309	+	SPARCL1	chr4	88415745	-
intron-intron	ENST00000375217	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375217	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375226	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375267	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375254	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375225	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000429347	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375224	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000543981	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000467272	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000374875		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000265371		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000374867		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000395995		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000374821		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000374822		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000374823		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000374816		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-intron	ENST00000375218	ENST00000432372		ChiTaRS3.1			BF839271	UBR4	chr1	19456298	+	NRP1	chr10	33480390	-
intron-3UTR	ENST00000394395	ENST00000246190		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000394395	ENST00000375238		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-5UTR	ENST00000394395	ENST00000606525		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000586023	ENST00000246190		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000586023	ENST00000375238		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-5UTR	ENST00000586023	ENST00000606525		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000225396	ENST00000246190		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000225396	ENST00000375238		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-5UTR	ENST00000225396	ENST00000606525		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000417170	ENST00000246190		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000417170	ENST00000375238		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-5UTR	ENST00000417170	ENST00000606525		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000591992	ENST00000246190		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-3UTR	ENST00000591992	ENST00000375238		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
intron-5UTR	ENST00000591992	ENST00000606525		ChiTaRS3.1			BG984251	TADA2A	chr17	35801828	+	NECAB3	chr20	32245631	+
3UTR-3UTR	ENST00000377275	ENST00000377275		ChiTaRS3.1			BE694671	ARL5B	chr10	18968036	-	ARL5B	chr10	18968106	+
intron-intron	ENST00000355272	ENST00000322773		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000355272	ENST00000393344		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000355272	ENST00000476656		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000356926	ENST00000322773		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000356926	ENST00000393344		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000356926	ENST00000476656		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000350812	ENST00000322773		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000350812	ENST00000393344		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000350812	ENST00000476656		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000345016	ENST00000322773		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000345016	ENST00000393344		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000345016	ENST00000476656		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000590683	ENST00000322773		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000590683	ENST00000393344		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000590683	ENST00000476656		ChiTaRS3.1			AI560431	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-3CDS	ENST00000215565	ENST00000377698		ChiTaRS3.1			BE856261	NDUFB7	chr19	14677064	+	ALDH1B1	chr9	38396600	-
intron-3UTR	ENST00000323851	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000323851	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000323851	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000323851	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000323851	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000323851	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000323851	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000323851	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000354944	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000354944	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000521414	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000521414	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000537882	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000537882	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000414097	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000414097	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000518176	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518176	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000522476	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000522476	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000323851		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000354944		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-5UTR	ENST00000518066	ENST00000521414		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000537882		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000414097		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000518176		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000522476		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-3UTR	ENST00000518066	ENST00000518066		ChiTaRS3.1			AA341881	NDRG1	chr8	134250199	-	NDRG1	chr8	134251058	-
intron-intron	ENST00000406775	ENST00000579940		ChiTaRS3.1			M85971	AUTS2	chr7	69290553	-	MIR548AI	chr14	30057617	+
intron-intron	ENST00000342771	ENST00000579940		ChiTaRS3.1			M85971	AUTS2	chr7	69290553	-	MIR548AI	chr14	30057617	+
intron-intron	ENST00000403018	ENST00000579940		ChiTaRS3.1			M85971	AUTS2	chr7	69290553	-	MIR548AI	chr14	30057617	+
intron-intron	ENST00000489774	ENST00000579940		ChiTaRS3.1			M85971	AUTS2	chr7	69290553	-	MIR548AI	chr14	30057617	+
intron-intron	ENST00000245907	ENST00000444837		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000245907	ENST00000569500		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000245907	ENST00000379811		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000245907	ENST00000568675		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000444837		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000569500		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000379811		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000568675		ChiTaRS3.1			AF074681	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000328631	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000328631	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000328631	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000328631	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000328631	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000328631	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000328631	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000328631	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000328631	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000328631	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000328631	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000328631	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000340879	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000340879	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000340879	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000340879	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000340879	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000340879	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000432678	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000432678	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000432678	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000432678	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000432678	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000432678	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000431721	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000431721	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000431721	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000431721	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000431721	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000431721	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000449610	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000449610	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000449610	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000449610	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000449610	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000449610	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000413298	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000413298	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000413298	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000413298	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000413298	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000413298	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000450045	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000450045	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000450045	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000450045	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000450045	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000450045	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000446860	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000446860	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000446860	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000446860	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000446860	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000446860	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000417896	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000417896	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000417896	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000417896	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000417896	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000417896	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000443964	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000443964	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000443964	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000443964	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000443964	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000443964	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000436134	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000436134	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000436134	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000436134	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000436134	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000436134	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000328631		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000453202	ENST00000340879		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000453202	ENST00000432678		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000453202	ENST00000431721		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000453202	ENST00000449610		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-3UTR	ENST00000453202	ENST00000413298		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000450045		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000446860		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000417896		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000443964		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000436134		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
intron-intron	ENST00000453202	ENST00000453202		ChiTaRS3.1			BX494271	IP6K2	chr3	48731177	+	IP6K2	chr3	48731394	-
5CDS-intron	ENST00000218089	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000218089	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000218089	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000218089	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000218089	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000218089	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000218089	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000469481	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5UTR-intron	ENST00000354548	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371160	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371157	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371145	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000218089		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000469481		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000354548		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000371160		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000371157		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000371145		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
5CDS-intron	ENST00000371144	ENST00000371144		ChiTaRS3.1			AW876601	STAG2	chrX	123164818	-	STAG2	chrX	123190086	-
intron-intron	ENST00000393158	ENST00000393158		ChiTaRS3.1			AA835821	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000393158	ENST00000302251		ChiTaRS3.1			AA835821	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000302251	ENST00000393158		ChiTaRS3.1			AA835821	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000302251	ENST00000302251		ChiTaRS3.1			AA835821	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
Frame-shit	ENST00000316754	ENST00000274496		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
Frame-shit	ENST00000316754	ENST00000448443		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
Frame-shit	ENST00000316754	ENST00000513112		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
3UTR-3CDS	ENST00000557133	ENST00000274496		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
3UTR-3CDS	ENST00000557133	ENST00000448443		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
3UTR-3CDS	ENST00000557133	ENST00000513112		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
Frame-shit	ENST00000555125	ENST00000274496		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
Frame-shit	ENST00000555125	ENST00000448443		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
Frame-shit	ENST00000555125	ENST00000513112		ChiTaRS3.1			DA570211	RHOJ	chr14	63735873	+	YIPF5	chr5	143545018	-
intron-intron	ENST00000303562	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000303562	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000554617	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000554617	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000556324	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000556324	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000535987	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000535987	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000555242	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000555242	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
5UTR-intron	ENST00000555686	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
5UTR-intron	ENST00000555686	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000555347	ENST00000356805		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000555347	ENST00000333896		ChiTaRS3.1			BI045531	FOS	chr14	75746437	+	SPTBN1	chr2	54891170	+
intron-intron	ENST00000369939	ENST00000369939		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000369939	ENST00000529753		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000369939	ENST00000369938		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000529753	ENST00000369939		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000529753	ENST00000529753		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000529753	ENST00000369938		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000369938	ENST00000369939		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000369938	ENST00000529753		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000369938	ENST00000369938		ChiTaRS3.1			BF373521	KIAA1324	chr1	109727488	+	KIAA1324	chr1	109727749	-
intron-intron	ENST00000305978	ENST00000305978		ChiTaRS3.1			CD696851	SCAND1	chrX	134420368	-	SCAND1	chrX	134477651	-
intron-intron	ENST00000305978	ENST00000373991		ChiTaRS3.1			CD696851	SCAND1	chrX	134420368	-	SCAND1	chrX	134477651	-
intron-intron	ENST00000373991	ENST00000305978		ChiTaRS3.1			CD696851	SCAND1	chrX	134420368	-	SCAND1	chrX	134477651	-
intron-intron	ENST00000373991	ENST00000373991		ChiTaRS3.1			CD696851	SCAND1	chrX	134420368	-	SCAND1	chrX	134477651	-
intron-intron	ENST00000408881	ENST00000408881		ChiTaRS3.1			AI392691	MIR1256	chr10	74330872	+	MIR1256	chr10	74326143	+
intron-intron	ENST00000396373	ENST00000253110		ChiTaRS3.1			BF822591	ETV6	chr12	11965284	-	C19orf66	chr19	10202443	-
intron-intron	ENST00000396373	ENST00000591813		ChiTaRS3.1			BF822591	ETV6	chr12	11965284	-	C19orf66	chr19	10202443	-
intron-intron	ENST00000396373	ENST00000397881		ChiTaRS3.1			BF822591	ETV6	chr12	11965284	-	C19orf66	chr19	10202443	-
intron-intron	ENST00000544715	ENST00000253110		ChiTaRS3.1			BF822591	ETV6	chr12	11965284	-	C19orf66	chr19	10202443	-
intron-intron	ENST00000544715	ENST00000591813		ChiTaRS3.1			BF822591	ETV6	chr12	11965284	-	C19orf66	chr19	10202443	-
intron-intron	ENST00000544715	ENST00000397881		ChiTaRS3.1			BF822591	ETV6	chr12	11965284	-	C19orf66	chr19	10202443	-
intron-3UTR	ENST00000369303	ENST00000259371		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-3UTR	ENST00000369303	ENST00000408936		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-intron	ENST00000369303	ENST00000309989		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-intron	ENST00000369303	ENST00000487716		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-3UTR	ENST00000369297	ENST00000259371		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-3UTR	ENST00000369297	ENST00000408936		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-intron	ENST00000369297	ENST00000309989		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-intron	ENST00000369297	ENST00000487716		ChiTaRS3.1			CB242031	EPHA7	chr6	94128225	+	DAB2IP	chr9	124547456	+
intron-3UTR	ENST00000592954	ENST00000194900		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000592954	ENST00000374360		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000592954	ENST00000374355		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000592954	ENST00000542398		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-intron	ENST00000592954	ENST00000461646		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
3UTR-3UTR	ENST00000419266	ENST00000194900		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
3UTR-3UTR	ENST00000419266	ENST00000374360		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
3UTR-3UTR	ENST00000419266	ENST00000374355		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
3UTR-3UTR	ENST00000419266	ENST00000542398		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
3UTR-intron	ENST00000419266	ENST00000461646		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000591600	ENST00000194900		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000591600	ENST00000374360		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000591600	ENST00000374355		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3UTR	ENST00000591600	ENST00000542398		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-intron	ENST00000591600	ENST00000461646		ChiTaRS3.1			AA345841	APOC4	chr19	45452048	+	DLG3	chrX	69723377	+
intron-3CDS	ENST00000301607	ENST00000215582		ChiTaRS3.1			BF852691	EVPL	chr17	74011039	+	MISP	chr19	757696	+
intron-3CDS	ENST00000586740	ENST00000215582		ChiTaRS3.1			BF852691	EVPL	chr17	74011039	+	MISP	chr19	757696	+
intron-3CDS	ENST00000476243	ENST00000398590		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000295900		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000487717		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000538065		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000484332		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-intron	ENST00000476243	ENST00000488239		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000398590		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000295900		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000487717		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000538065		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000484332		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-intron	ENST00000299736	ENST00000488239		ChiTaRS3.1			BF511861	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-intron	ENST00000312943	ENST00000353139		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000360679		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000394406		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000335166		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000416895		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000361253		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000588142		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000312943	ENST00000589665		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000353139		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000360679		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000394406		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000335166		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000416895		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000361253		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000588142		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000377112	ENST00000589665		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000353139		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000360679		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000394406		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000335166		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000416895		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000361253		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000588142		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000357198	ENST00000589665		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000353139		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000360679		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000394406		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000335166		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000416895		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000361253		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000588142		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-intron	ENST00000501403	ENST00000589665		ChiTaRS3.1			BF511511	DOK3	chr5	176929254	+	ACACA	chr17	35540059	+
intron-3CDS	ENST00000392951	ENST00000532219		ChiTaRS3.1			AW998111	TAGLN	chr11	117075317	+	ANKHD1-EIF4EBP3	chr5	139921798	+
3UTR-3CDS	ENST00000530649	ENST00000532219		ChiTaRS3.1			AW998111	TAGLN	chr11	117075317	+	ANKHD1-EIF4EBP3	chr5	139921798	+
3UTR-3CDS	ENST00000532870	ENST00000532219		ChiTaRS3.1			AW998111	TAGLN	chr11	117075317	+	ANKHD1-EIF4EBP3	chr5	139921798	+
intron-3UTR	ENST00000537875	ENST00000583195		ChiTaRS3.1			BM728391	COL14A1	chr8	121351506	-	LINC00672	chr17	37084016	-
intron-3UTR	ENST00000309791	ENST00000583195		ChiTaRS3.1			BM728391	COL14A1	chr8	121351506	-	LINC00672	chr17	37084016	-
intron-3UTR	ENST00000297848	ENST00000583195		ChiTaRS3.1			BM728391	COL14A1	chr8	121351506	-	LINC00672	chr17	37084016	-
intron-3UTR	ENST00000247781	ENST00000583195		ChiTaRS3.1			BM728391	COL14A1	chr8	121351506	-	LINC00672	chr17	37084016	-
intron-3UTR	ENST00000432943	ENST00000583195		ChiTaRS3.1			BM728391	COL14A1	chr8	121351506	-	LINC00672	chr17	37084016	-
intron-3UTR	ENST00000343253	ENST00000382582		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000343253	ENST00000355994		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000343253	ENST00000397875		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000343253	ENST00000397866		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000343253	ENST00000397865		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000527041		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000343253	ENST00000359645		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000343253	ENST00000528160		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000397869		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000354542		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000526111		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000580402		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000579129		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000578193		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000397863		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000397860		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000343253	ENST00000487778		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000382582		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000355994		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000397875		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000397866		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000397865		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000527041		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000359645		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000401026	ENST00000528160		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000397869		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000354542		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000526111		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000580402		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000579129		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000578193		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000397863		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000397860		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000401026	ENST00000487778		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000382582		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000355994		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000397875		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000397866		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000397865		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000527041		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000359645		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000338949	ENST00000528160		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000397869		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000354542		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000526111		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000580402		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000579129		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000578193		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000397863		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000397860		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000338949	ENST00000487778		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000382582		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000355994		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000397875		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000397866		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000397865		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000527041		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000359645		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000334652	ENST00000528160		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000397869		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000354542		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000526111		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000580402		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000579129		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000578193		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000397863		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000397860		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000334652	ENST00000487778		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000382582		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000355994		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000397875		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000397866		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000397865		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000527041		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000359645		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000557479	ENST00000528160		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000397869		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000354542		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000526111		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000580402		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000579129		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000578193		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000397863		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000397860		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000557479	ENST00000487778		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000382582		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000355994		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000397875		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000397866		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000397865		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000527041		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000359645		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-3UTR	ENST00000421014	ENST00000528160		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000397869		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000354542		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000526111		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000580402		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000579129		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000578193		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000397863		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000397860		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
intron-intron	ENST00000421014	ENST00000487778		ChiTaRS3.1			DA132471	CCDC18	chr1	93658054	+	MBP	chr18	74692208	-
3UTR-3UTR	ENST00000318008	ENST00000318008		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-intron	ENST00000318008	ENST00000433206		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-3UTR	ENST00000318008	ENST00000435347		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-3UTR	ENST00000433206	ENST00000318008		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-intron	ENST00000433206	ENST00000433206		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-3UTR	ENST00000433206	ENST00000435347		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-3UTR	ENST00000435347	ENST00000318008		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-intron	ENST00000435347	ENST00000433206		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-3UTR	ENST00000435347	ENST00000435347		ChiTaRS3.1			AA659591	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-intron	ENST00000323853	ENST00000323853		ChiTaRS3.1			BG497601	SNRNP200	chr2	96950344	-	SNRNP200	chr2	96950917	-
intron-intron	ENST00000323853	ENST00000349783		ChiTaRS3.1			BG497601	SNRNP200	chr2	96950344	-	SNRNP200	chr2	96950917	-
intron-intron	ENST00000349783	ENST00000323853		ChiTaRS3.1			BG497601	SNRNP200	chr2	96950344	-	SNRNP200	chr2	96950917	-
intron-intron	ENST00000349783	ENST00000349783		ChiTaRS3.1			BG497601	SNRNP200	chr2	96950344	-	SNRNP200	chr2	96950917	-
In-frame	ENST00000305877	ENST00000539801		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000305877	ENST00000381652		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000305877	ENST00000544510		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
5CDS-intron	ENST00000305877	ENST00000487310		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000359540	ENST00000539801		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000359540	ENST00000381652		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000359540	ENST00000544510		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
5CDS-intron	ENST00000359540	ENST00000487310		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000398512	ENST00000539801		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000398512	ENST00000381652		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000398512	ENST00000544510		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
5CDS-intron	ENST00000398512	ENST00000487310		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
intron-3CDS	ENST00000436990	ENST00000539801		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
intron-3CDS	ENST00000436990	ENST00000381652		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
intron-3CDS	ENST00000436990	ENST00000544510		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
intron-intron	ENST00000436990	ENST00000487310		ChiTaRS3.1			JN021381	BCR	chr22	23524426	+	JAK2	chr9	5077449	+
In-frame	ENST00000255759	ENST00000262461		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000255759	ENST00000343225		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000255759	ENST00000507791		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573968	ENST00000262461		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573968	ENST00000343225		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000573968	ENST00000507791		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573396	ENST00000262461		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573396	ENST00000343225		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000573396	ENST00000507791		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-3CDS	ENST00000575744	ENST00000262461		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-3CDS	ENST00000575744	ENST00000343225		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-3UTR	ENST00000575744	ENST00000507791		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000575073	ENST00000262461		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000575073	ENST00000343225		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000575073	ENST00000507791		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573429	ENST00000262461		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573429	ENST00000343225		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000573429	ENST00000507791		ChiTaRS3.1			BG529061	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-intron	ENST00000299192	ENST00000299192		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000299192	ENST00000285767		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000299192	ENST00000564942		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000285767	ENST00000299192		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000285767	ENST00000285767		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000285767	ENST00000564942		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000564942	ENST00000299192		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000564942	ENST00000285767		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000564942	ENST00000564942		ChiTaRS3.1			BF328501	HEATR3	chr16	50107435	+	HEATR3	chr16	50107448	-
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			BX115271	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-3CDS	ENST00000560302	ENST00000339865		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000560302	ENST00000539466		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000560302	ENST00000527733		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000560302	ENST00000399455		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-intron	ENST00000560302	ENST00000305481		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-3CDS	ENST00000394518	ENST00000339865		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000394518	ENST00000539466		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000394518	ENST00000527733		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000394518	ENST00000399455		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-intron	ENST00000394518	ENST00000305481		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-3CDS	ENST00000361243	ENST00000339865		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000361243	ENST00000539466		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000361243	ENST00000527733		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000361243	ENST00000399455		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-intron	ENST00000361243	ENST00000305481		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-3CDS	ENST00000560579	ENST00000339865		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000560579	ENST00000539466		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000560579	ENST00000527733		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000560579	ENST00000399455		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-intron	ENST00000560579	ENST00000305481		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-3CDS	ENST00000394510	ENST00000339865		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000394510	ENST00000539466		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000394510	ENST00000527733		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-5UTR	ENST00000394510	ENST00000399455		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-intron	ENST00000394510	ENST00000305481		ChiTaRS3.1			BF368021	AKAP13	chr15	85945012	+	USP47	chr11	11964382	+
intron-intron	ENST00000488594	ENST00000356770		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000394830		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000296302		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000337303		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000410007		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000409057		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000409114		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000488594	ENST00000409767		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000356770		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000394830		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000296302		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000337303		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000410007		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000409057		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000409114		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000358966	ENST00000409767		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000356770		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000394830		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000296302		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000337303		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000410007		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000409057		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000409114		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000282841	ENST00000409767		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000356770		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000394830		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000296302		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000337303		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000410007		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000409057		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000409114		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
5UTR-intron	ENST00000391855	ENST00000409767		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000356770		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000394830		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000296302		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000337303		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000410007		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000409057		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000409114		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000489692	ENST00000409767		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000356770		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000394830		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000296302		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000337303		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000410007		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000409057		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000409114		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-intron	ENST00000476121	ENST00000409767		ChiTaRS3.1			Z21101	GGPS1	chr1	235491905	-	PBRM1	chr3	52714218	+
intron-3UTR	ENST00000369582	ENST00000435765		ChiTaRS3.1			BF985831	CGA	chr6	87795497	+	PSMC2	chr7	103008562	-
intron-3UTR	ENST00000369582	ENST00000292644		ChiTaRS3.1			BF985831	CGA	chr6	87795497	+	PSMC2	chr7	103008562	-
intron-3UTR	ENST00000369582	ENST00000544811		ChiTaRS3.1			BF985831	CGA	chr6	87795497	+	PSMC2	chr7	103008562	-
intron-3CDS	ENST00000340253	ENST00000425013		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000340253	ENST00000389902		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-intron	ENST00000340253	ENST00000469375		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000296701	ENST00000425013		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000296701	ENST00000389902		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-intron	ENST00000296701	ENST00000469375		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000394370	ENST00000425013		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000394370	ENST00000389902		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-intron	ENST00000394370	ENST00000469375		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000509699	ENST00000425013		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000509699	ENST00000389902		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-intron	ENST00000509699	ENST00000469375		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000513826	ENST00000425013		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-3CDS	ENST00000513826	ENST00000389902		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
intron-intron	ENST00000513826	ENST00000469375		ChiTaRS3.1			DA054181	FBXO38	chr5	147774475	+	RNF216	chr7	5778986	-
Frame-shit	ENST00000370179	ENST00000313899		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370179	ENST00000353341		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370179	ENST00000543098		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370179	ENST00000352301		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370179	ENST00000508119		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370179	ENST00000541060		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000313899		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000353341		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000543098		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000352301		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370177	ENST00000508119		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370177	ENST00000541060		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000313899		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000353341		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000543098		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000352301		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-5UTR	ENST00000473620	ENST00000508119		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-5UTR	ENST00000473620	ENST00000541060		ChiTaRS3.1			BF805251	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766341	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766341	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
3UTR-3UTR	ENST00000320985	ENST00000320985		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000320985	ENST00000361642		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000320985	ENST00000559858		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000320985	ENST00000560721		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000320985	ENST00000542815		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000320985	ENST00000446923		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000361642	ENST00000320985		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000361642	ENST00000361642		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000361642	ENST00000559858		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000361642	ENST00000560721		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000361642	ENST00000542815		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000361642	ENST00000446923		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000559858	ENST00000320985		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000559858	ENST00000361642		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000559858	ENST00000559858		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000559858	ENST00000560721		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000559858	ENST00000542815		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000559858	ENST00000446923		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000560721	ENST00000320985		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000560721	ENST00000361642		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000560721	ENST00000559858		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000560721	ENST00000560721		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000560721	ENST00000542815		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000560721	ENST00000446923		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000542815	ENST00000320985		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000542815	ENST00000361642		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000542815	ENST00000559858		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000542815	ENST00000560721		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-intron	ENST00000542815	ENST00000542815		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
intron-3UTR	ENST00000542815	ENST00000446923		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000446923	ENST00000320985		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000446923	ENST00000361642		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000446923	ENST00000559858		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000446923	ENST00000560721		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-intron	ENST00000446923	ENST00000542815		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
3UTR-3UTR	ENST00000446923	ENST00000446923		ChiTaRS3.1			BI333151	ZEB1	chr10	31817527	-	ZEB1	chr10	31817568	+
Frame-shit	ENST00000379388	ENST00000379388		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000379388	ENST00000484210		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000379388	ENST00000541134		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-3CDS	ENST00000484210	ENST00000379388		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-intron	ENST00000484210	ENST00000484210		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-intron	ENST00000484210	ENST00000541134		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
Frame-shit	ENST00000541134	ENST00000379388		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000541134	ENST00000484210		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000541134	ENST00000541134		ChiTaRS3.1			AA602271	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-3CDS	ENST00000589876	ENST00000379561		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000589876	ENST00000473775		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000245925	ENST00000379561		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000245925	ENST00000473775		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000536630	ENST00000379561		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000536630	ENST00000473775		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000587152	ENST00000379561		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000587152	ENST00000473775		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000586902	ENST00000379561		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-intron	ENST00000586902	ENST00000473775		ChiTaRS3.1			BE767461	EML2	chr19	46140321	+	FOXO1	chr13	41134711	+
intron-3CDS	ENST00000380394	ENST00000346178		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000380394	ENST00000356638		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000380394	ENST00000534779		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-5UTR	ENST00000380394	ENST00000540933		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000380394	ENST00000534422		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000498815	ENST00000346178		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000498815	ENST00000356638		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000498815	ENST00000534779		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-5UTR	ENST00000498815	ENST00000540933		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000498815	ENST00000534422		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000380384	ENST00000346178		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000380384	ENST00000356638		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000380384	ENST00000534779		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-5UTR	ENST00000380384	ENST00000540933		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000380384	ENST00000534422		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000315377	ENST00000346178		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000315377	ENST00000356638		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000315377	ENST00000534779		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-5UTR	ENST00000315377	ENST00000540933		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000315377	ENST00000534422		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000380381	ENST00000346178		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-3CDS	ENST00000380381	ENST00000356638		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000380381	ENST00000534779		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-5UTR	ENST00000380381	ENST00000540933		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
intron-intron	ENST00000380381	ENST00000534422		ChiTaRS3.1			BF514651	RPS6	chr9	19378387	+	GANAB	chr11	62407163	-
3UTR-3CDS	ENST00000521913	ENST00000295321		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
3UTR-3CDS	ENST00000521913	ENST00000455721		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
3UTR-intron	ENST00000521913	ENST00000486662		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
3UTR-3CDS	ENST00000311151	ENST00000295321		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
3UTR-3CDS	ENST00000311151	ENST00000455721		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
3UTR-intron	ENST00000311151	ENST00000486662		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
intron-3CDS	ENST00000523027	ENST00000295321		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
intron-3CDS	ENST00000523027	ENST00000455721		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
intron-intron	ENST00000523027	ENST00000486662		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
intron-3CDS	ENST00000521983	ENST00000295321		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
intron-3CDS	ENST00000521983	ENST00000455721		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
intron-intron	ENST00000521983	ENST00000486662		ChiTaRS3.1			BF361001	DPYSL2	chr8	26514550	-	IWS1	chr2	128262689	-
5CDS-3UTR	ENST00000389266	ENST00000396821		ChiTaRS3.1			AI444651	GARS	chr7	30673427	-	DDX17	chr22	38880108	-
5CDS-3UTR	ENST00000389266	ENST00000444597		ChiTaRS3.1			AI444651	GARS	chr7	30673427	-	DDX17	chr22	38880108	-
5CDS-3UTR	ENST00000389266	ENST00000381633		ChiTaRS3.1			AI444651	GARS	chr7	30673427	-	DDX17	chr22	38880108	-
5CDS-intron	ENST00000389266	ENST00000432525		ChiTaRS3.1			AI444651	GARS	chr7	30673427	-	DDX17	chr22	38880108	-
intron-3UTR	ENST00000294973	ENST00000355272		ChiTaRS3.1			AI912751	HAAO	chr2	42994604	+	AP3D1	chr19	2101276	-
intron-3UTR	ENST00000294973	ENST00000356926		ChiTaRS3.1			AI912751	HAAO	chr2	42994604	+	AP3D1	chr19	2101276	-
intron-3UTR	ENST00000294973	ENST00000350812		ChiTaRS3.1			AI912751	HAAO	chr2	42994604	+	AP3D1	chr19	2101276	-
intron-3UTR	ENST00000294973	ENST00000345016		ChiTaRS3.1			AI912751	HAAO	chr2	42994604	+	AP3D1	chr19	2101276	-
intron-intron	ENST00000294973	ENST00000590683		ChiTaRS3.1			AI912751	HAAO	chr2	42994604	+	AP3D1	chr19	2101276	-
3UTR-3UTR	ENST00000376929	ENST00000376929		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-intron	ENST00000376929	ENST00000506690		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000376929	ENST00000389805		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000376929	ENST00000402874		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000376929	ENST00000510187		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000376929	ENST00000360718		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-3UTR	ENST00000506690	ENST00000376929		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-intron	ENST00000506690	ENST00000506690		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-3UTR	ENST00000506690	ENST00000389805		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-3UTR	ENST00000506690	ENST00000402874		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-3UTR	ENST00000506690	ENST00000510187		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-3UTR	ENST00000506690	ENST00000360718		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000389805	ENST00000376929		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-intron	ENST00000389805	ENST00000506690		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000389805	ENST00000389805		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000389805	ENST00000402874		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000389805	ENST00000510187		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000389805	ENST00000360718		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000402874	ENST00000376929		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-intron	ENST00000402874	ENST00000506690		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000402874	ENST00000389805		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000402874	ENST00000402874		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000402874	ENST00000510187		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000402874	ENST00000360718		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
5CDS-3UTR	ENST00000510187	ENST00000376929		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
5CDS-intron	ENST00000510187	ENST00000506690		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
5CDS-3UTR	ENST00000510187	ENST00000389805		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
5CDS-3UTR	ENST00000510187	ENST00000402874		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
5CDS-3UTR	ENST00000510187	ENST00000510187		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
5CDS-3UTR	ENST00000510187	ENST00000360718		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000360718	ENST00000376929		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-intron	ENST00000360718	ENST00000506690		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000360718	ENST00000389805		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000360718	ENST00000402874		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000360718	ENST00000510187		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
3UTR-3UTR	ENST00000360718	ENST00000360718		ChiTaRS3.1			BG910921	SQSTM1	chr5	179263606	-	SQSTM1	chr5	179263709	+
intron-3CDS	ENST00000380520	ENST00000380520		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380520	ENST00000380524		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380520	ENST00000380529		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380520	ENST00000380539		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380520	ENST00000380546		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380520	ENST00000335686		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380524	ENST00000380520		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380524	ENST00000380524		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380524	ENST00000380529		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380524	ENST00000380539		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380524	ENST00000380546		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380524	ENST00000335686		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380529	ENST00000380520		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380529	ENST00000380524		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380529	ENST00000380529		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380529	ENST00000380539		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380529	ENST00000380546		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380529	ENST00000335686		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380539	ENST00000380520		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380539	ENST00000380524		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380539	ENST00000380529		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380539	ENST00000380539		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380539	ENST00000380546		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380539	ENST00000335686		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380546	ENST00000380520		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380546	ENST00000380524		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380546	ENST00000380529		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380546	ENST00000380539		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380546	ENST00000380546		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000380546	ENST00000335686		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000335686	ENST00000380520		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000335686	ENST00000380524		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000335686	ENST00000380529		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000335686	ENST00000380539		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000335686	ENST00000380546		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
intron-3CDS	ENST00000335686	ENST00000335686		ChiTaRS3.1			BM545171	SERPINB6	chr6	2949285	+	SERPINB6	chr6	2949206	-
5UTR-3CDS	ENST00000541412	ENST00000541412		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
5UTR-3CDS	ENST00000541412	ENST00000229563		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
5UTR-3UTR	ENST00000541412	ENST00000467415		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
5UTR-3CDS	ENST00000229563	ENST00000541412		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
5UTR-3CDS	ENST00000229563	ENST00000229563		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
5UTR-3UTR	ENST00000229563	ENST00000467415		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
3UTR-3CDS	ENST00000467415	ENST00000541412		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
3UTR-3CDS	ENST00000467415	ENST00000229563		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
3UTR-3UTR	ENST00000467415	ENST00000467415		ChiTaRS3.1			CB161661	TMEM14C	chr6	10723434	-	TMEM14C	chr6	10730865	+
3UTR-3UTR	ENST00000263946	ENST00000263946		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-3UTR	ENST00000263946	ENST00000367324		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-intron	ENST00000263946	ENST00000352845		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-intron	ENST00000263946	ENST00000475988		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-3UTR	ENST00000367324	ENST00000263946		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-3UTR	ENST00000367324	ENST00000367324		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-intron	ENST00000367324	ENST00000352845		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
3UTR-intron	ENST00000367324	ENST00000475988		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-3UTR	ENST00000352845	ENST00000263946		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-3UTR	ENST00000352845	ENST00000367324		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-intron	ENST00000352845	ENST00000352845		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-intron	ENST00000352845	ENST00000475988		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-3UTR	ENST00000475988	ENST00000263946		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-3UTR	ENST00000475988	ENST00000367324		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-intron	ENST00000475988	ENST00000352845		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-intron	ENST00000475988	ENST00000475988		ChiTaRS3.1			BX502601	PKP1	chr1	201301280	-	PKP1	chr1	201301331	+
intron-3CDS	ENST00000441250	ENST00000321685		ChiTaRS3.1			H40901	NUDT22	chr11	63998234	-	DNAJC4	chr11	64001543	+
intron-3UTR	ENST00000441250	ENST00000355040		ChiTaRS3.1			H40901	NUDT22	chr11	63998234	-	DNAJC4	chr11	64001543	+
intron-3UTR	ENST00000441250	ENST00000321460		ChiTaRS3.1			H40901	NUDT22	chr11	63998234	-	DNAJC4	chr11	64001543	+
intron-3CDS	ENST00000279206	ENST00000321685		ChiTaRS3.1			H40901	NUDT22	chr11	63998234	-	DNAJC4	chr11	64001543	+
intron-3UTR	ENST00000279206	ENST00000355040		ChiTaRS3.1			H40901	NUDT22	chr11	63998234	-	DNAJC4	chr11	64001543	+
intron-3UTR	ENST00000279206	ENST00000321460		ChiTaRS3.1			H40901	NUDT22	chr11	63998234	-	DNAJC4	chr11	64001543	+
intron-3UTR	ENST00000297904	ENST00000297904		ChiTaRS3.1			CB218801	FIGF	chrX	15402103	+	FIGF	chrX	15363941	-
intron-intron	ENST00000297904	ENST00000488351		ChiTaRS3.1			CB218801	FIGF	chrX	15402103	+	FIGF	chrX	15363941	-
intron-3UTR	ENST00000488351	ENST00000297904		ChiTaRS3.1			CB218801	FIGF	chrX	15402103	+	FIGF	chrX	15363941	-
intron-intron	ENST00000488351	ENST00000488351		ChiTaRS3.1			CB218801	FIGF	chrX	15402103	+	FIGF	chrX	15363941	-
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AM050801	KMT2A	chr11	118359327	+	MLLT1	chr19	6274154	-
intron-3CDS	ENST00000361204	ENST00000238256		ChiTaRS3.1			AW366881	SREBF2	chr22	42258463	-	FKBP15	chr9	115962218	+
intron-intron	ENST00000361204	ENST00000493847		ChiTaRS3.1			AW366881	SREBF2	chr22	42258463	-	FKBP15	chr9	115962218	+
intron-3CDS	ENST00000491541	ENST00000238256		ChiTaRS3.1			AW366881	SREBF2	chr22	42258463	-	FKBP15	chr9	115962218	+
intron-intron	ENST00000491541	ENST00000493847		ChiTaRS3.1			AW366881	SREBF2	chr22	42258463	-	FKBP15	chr9	115962218	+
5UTR-intron	ENST00000428826	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000428826	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000428826	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000428826	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000428826	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000428826	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000415827	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000415827	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000415827	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000415827	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000415827	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000415827	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000435174	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000435174	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000435174	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000435174	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000435174	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000435174	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000592743	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000592743	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000592743	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000592743	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000592743	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000592743	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000585893	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000585893	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000585893	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000585893	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000585893	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000585893	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000590078	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000590078	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000590078	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000590078	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000590078	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
5UTR-intron	ENST00000590078	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000590783	ENST00000264657		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000590783	ENST00000585517		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000590783	ENST00000389272		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000590783	ENST00000588969		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000590783	ENST00000404395		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-intron	ENST00000590783	ENST00000590776		ChiTaRS3.1			BU658881	EZH1	chr17	40882846	-	STAT3	chr17	40482717	+
intron-3CDS	ENST00000276282	ENST00000536252		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000276282	ENST00000545103		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000276282	ENST00000540348		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000276282	ENST00000543944		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000276282	ENST00000297661		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-intron	ENST00000276282	ENST00000379186		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-intron	ENST00000276282	ENST00000359544		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000520091	ENST00000536252		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000520091	ENST00000545103		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000520091	ENST00000540348		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000520091	ENST00000543944		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-3CDS	ENST00000520091	ENST00000297661		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-intron	ENST00000520091	ENST00000379186		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
intron-intron	ENST00000520091	ENST00000359544		ChiTaRS3.1			BF354661	MFHAS1	chr8	8667090	-	UBAP1	chr9	34249864	+
In-frame	ENST00000336023	ENST00000340802		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
In-frame	ENST00000336023	ENST00000359794		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
5CDS-intron	ENST00000336023	ENST00000551548		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
5CDS-intron	ENST00000336023	ENST00000395233		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
5CDS-intron	ENST00000336023	ENST00000551804		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
5CDS-intron	ENST00000336023	ENST00000547587		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
5CDS-intron	ENST00000336023	ENST00000312352		ChiTaRS3.1			DA077791	TUBA1B	chr12	49525080	-	PFKM	chr12	48531503	+
intron-intron	ENST00000297157	ENST00000409236		ChiTaRS3.1			BQ774911	RP9	chr7	33134964	+	AFF3	chr2	100581859	-
intron-intron	ENST00000297157	ENST00000356421		ChiTaRS3.1			BQ774911	RP9	chr7	33134964	+	AFF3	chr2	100581859	-
intron-intron	ENST00000297157	ENST00000317233		ChiTaRS3.1			BQ774911	RP9	chr7	33134964	+	AFF3	chr2	100581859	-
intron-intron	ENST00000297157	ENST00000409579		ChiTaRS3.1			BQ774911	RP9	chr7	33134964	+	AFF3	chr2	100581859	-
intron-intron	ENST00000297157	ENST00000483600		ChiTaRS3.1			BQ774911	RP9	chr7	33134964	+	AFF3	chr2	100581859	-
intron-intron	ENST00000495893	ENST00000495893		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000495893	ENST00000494943		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000495893	ENST00000467570		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000495893	ENST00000474275		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000495893	ENST00000497658		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000495893	ENST00000481639		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000494943	ENST00000495893		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000494943	ENST00000494943		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000494943	ENST00000467570		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000494943	ENST00000474275		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000494943	ENST00000497658		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000494943	ENST00000481639		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000467570	ENST00000495893		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000467570	ENST00000494943		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000467570	ENST00000467570		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000467570	ENST00000474275		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000467570	ENST00000497658		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000467570	ENST00000481639		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000474275	ENST00000495893		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000474275	ENST00000494943		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000474275	ENST00000467570		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000474275	ENST00000474275		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000474275	ENST00000497658		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000474275	ENST00000481639		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000497658	ENST00000495893		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000497658	ENST00000494943		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000497658	ENST00000467570		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000497658	ENST00000474275		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000497658	ENST00000497658		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000497658	ENST00000481639		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000481639	ENST00000495893		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000481639	ENST00000494943		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000481639	ENST00000467570		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000481639	ENST00000474275		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000481639	ENST00000497658		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
intron-intron	ENST00000481639	ENST00000481639		ChiTaRS3.1			AW856591	PHC3	chr3	169867932	+	PHC3	chr3	169886165	-
Frame-shit	ENST00000560741	ENST00000372876		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
In-frame	ENST00000560741	ENST00000244625		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
Frame-shit	ENST00000306072	ENST00000372876		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
In-frame	ENST00000306072	ENST00000244625		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
Frame-shit	ENST00000379224	ENST00000372876		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
In-frame	ENST00000379224	ENST00000244625		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
intron-3CDS	ENST00000560746	ENST00000372876		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
intron-3CDS	ENST00000560746	ENST00000244625		ChiTaRS3.1			BQ052721	ISG20	chr15	89182642	+	TBCC	chr6	42713713	-
intron-3UTR	ENST00000398559	ENST00000398559		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-3UTR	ENST00000398559	ENST00000543976		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-intron	ENST00000398559	ENST00000489370		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-3UTR	ENST00000543976	ENST00000398559		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-3UTR	ENST00000543976	ENST00000543976		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-intron	ENST00000543976	ENST00000489370		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-3UTR	ENST00000489370	ENST00000398559		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-3UTR	ENST00000489370	ENST00000543976		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-intron	ENST00000489370	ENST00000489370		ChiTaRS3.1			BG164911	TMF1	chr3	69072075	+	TMF1	chr3	69072036	-
intron-3UTR	ENST00000534695	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534695	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534695	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000455725	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000531273	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000420461	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000378852	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534600	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000221957		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000592528		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000529334	ENST00000585479		ChiTaRS3.1			BF223791	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000455089	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000455089	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000342916	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000344576	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000420316	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000275493	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000442591	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000463948	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000455089		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000342916		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000344576		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000420316		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000275493		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000442591		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000463948		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-intron	ENST00000454757	ENST00000454757		ChiTaRS3.1			BF988221	EGFR	chr7	55099407	+	EGFR	chr7	55099204	-
intron-3UTR	ENST00000356406	ENST00000337190		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-intron	ENST00000356406	ENST00000515378		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-3UTR	ENST00000413009	ENST00000337190		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-intron	ENST00000413009	ENST00000515378		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-3UTR	ENST00000503233	ENST00000337190		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-intron	ENST00000503233	ENST00000515378		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-3UTR	ENST00000515797	ENST00000337190		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
intron-intron	ENST00000515797	ENST00000515378		ChiTaRS3.1			BF990511	ACOX3	chr4	8411245	-	MXD4	chr4	2249633	-
3UTR-3UTR	ENST00000405308	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-intron	ENST00000405308	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-3UTR	ENST00000359803	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-intron	ENST00000359803	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-3UTR	ENST00000395569	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-intron	ENST00000395569	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-3UTR	ENST00000395566	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-intron	ENST00000395566	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
intron-3UTR	ENST00000533283	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
intron-intron	ENST00000533283	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-3UTR	ENST00000407067	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-intron	ENST00000407067	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-3UTR	ENST00000395565	ENST00000262225		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
3UTR-intron	ENST00000395565	ENST00000509052		ChiTaRS3.1			BE858941	MDK	chr11	46405298	-	TMED2	chr12	124081861	-
intron-intron	ENST00000441802	ENST00000441802		ChiTaRS3.1			CV359811	FAT1	chr4	187552580	+	FAT1	chr4	187552692	-
intron-intron	ENST00000441802	ENST00000512347		ChiTaRS3.1			CV359811	FAT1	chr4	187552580	+	FAT1	chr4	187552692	-
intron-intron	ENST00000512347	ENST00000441802		ChiTaRS3.1			CV359811	FAT1	chr4	187552580	+	FAT1	chr4	187552692	-
intron-intron	ENST00000512347	ENST00000512347		ChiTaRS3.1			CV359811	FAT1	chr4	187552580	+	FAT1	chr4	187552692	-
intron-intron	ENST00000271843	ENST00000271843		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000271843	ENST00000356648		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000271843	ENST00000368589		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000271843	ENST00000471173		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000356648	ENST00000271843		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000356648	ENST00000356648		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000356648	ENST00000368589		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000356648	ENST00000471173		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000368589	ENST00000271843		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000368589	ENST00000356648		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000368589	ENST00000368589		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000368589	ENST00000471173		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000471173	ENST00000271843		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000471173	ENST00000356648		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000471173	ENST00000368589		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-intron	ENST00000471173	ENST00000471173		ChiTaRS3.1			CR997721	JTB	chr1	153948340	+	JTB	chr1	153949447	-
intron-5UTR	ENST00000397861	ENST00000568047		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000397861	ENST00000320640		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000397861	ENST00000544001		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000397862	ENST00000568047		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000397862	ENST00000320640		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000397862	ENST00000544001		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000575658	ENST00000568047		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000575658	ENST00000320640		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000575658	ENST00000544001		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000487705	ENST00000568047		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000487705	ENST00000320640		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-5UTR	ENST00000487705	ENST00000544001		ChiTaRS3.1			BF855391	C17orf67	chr17	54909009	+	ITFG1	chr16	47294519	+
intron-3CDS	ENST00000518347	ENST00000302125		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518347	ENST00000412103		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518347	ENST00000457570		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000424248	ENST00000302125		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000424248	ENST00000412103		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000424248	ENST00000457570		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000262585	ENST00000302125		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000262585	ENST00000412103		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000262585	ENST00000457570		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000519811	ENST00000302125		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000519811	ENST00000412103		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000519811	ENST00000457570		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000518806	ENST00000302125		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518806	ENST00000412103		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518806	ENST00000457570		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000523308	ENST00000302125		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000523308	ENST00000412103		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000523308	ENST00000457570		ChiTaRS3.1			BE928741	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-5UTR	ENST00000358344	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000358344	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000358344	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000358344	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000358344	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506339	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506339	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506339	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506339	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000506339	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000355836	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000355836	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000355836	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000355836	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000355836	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000514633	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000514633	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000514633	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000514633	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000514633	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000515193	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000515193	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000515193	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000515193	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000515193	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506259	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506259	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506259	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000506259	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000506259	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000504898	ENST00000541222		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000504898	ENST00000316856		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000504898	ENST00000586534		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-5UTR	ENST00000504898	ENST00000592268		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
intron-3UTR	ENST00000504898	ENST00000588826		ChiTaRS3.1			N98411	HNRNPAB	chr5	177636050	-	RAD23A	chr19	13059002	+
In-frame	ENST00000301740	ENST00000301740		ChiTaRS3.1			BG470971	SRRM2	chr16	2819227	+	SRRM2	chr16	2806464	+
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BG470971	SRRM2	chr16	2819227	+	SRRM2	chr16	2806464	+
3UTR-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BG470971	SRRM2	chr16	2819227	+	SRRM2	chr16	2806464	+
3UTR-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BG470971	SRRM2	chr16	2819227	+	SRRM2	chr16	2806464	+
intron-3UTR	ENST00000367511	ENST00000293778		ChiTaRS3.1			AI770161	FAM129A	chr1	184765735	+	CXCL16	chr17	4637545	+
intron-5UTR	ENST00000367511	ENST00000576153		ChiTaRS3.1			AI770161	FAM129A	chr1	184765735	+	CXCL16	chr17	4637545	+
intron-intron	ENST00000367511	ENST00000574412		ChiTaRS3.1			AI770161	FAM129A	chr1	184765735	+	CXCL16	chr17	4637545	+
intron-3UTR	ENST00000487074	ENST00000293778		ChiTaRS3.1			AI770161	FAM129A	chr1	184765735	+	CXCL16	chr17	4637545	+
intron-5UTR	ENST00000487074	ENST00000576153		ChiTaRS3.1			AI770161	FAM129A	chr1	184765735	+	CXCL16	chr17	4637545	+
intron-intron	ENST00000487074	ENST00000574412		ChiTaRS3.1			AI770161	FAM129A	chr1	184765735	+	CXCL16	chr17	4637545	+
intron-intron	ENST00000410059	ENST00000264710		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000410059	ENST00000462003		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000409163	ENST00000264710		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000409163	ENST00000462003		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000393147	ENST00000264710		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000393147	ENST00000462003		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000310323	ENST00000264710		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000310323	ENST00000462003		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000488208	ENST00000264710		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000488208	ENST00000462003		ChiTaRS3.1			BF958171	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000432416	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000432416	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000458426	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000458426	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000425132	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000425132	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000477919	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000477919	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000411432	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000411432	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000448007	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000448007	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000272839	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000272839	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000448823	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000448823	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000406927	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000406927	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000426075	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000426075	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000442521	ENST00000421483		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
intron-intron	ENST00000442521	ENST00000441399		ChiTaRS3.1			AA883551	METTL21A	chr2	208474085	+	RAP2C-AS1	chrX	131508323	+
5CDS-5UTR	ENST00000209718	ENST00000392272		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-5UTR	ENST00000209718	ENST00000368173		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-5UTR	ENST00000209718	ENST00000360089		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-intron	ENST00000209718	ENST00000359209		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-intron	ENST00000209718	ENST00000416935		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-intron	ENST00000209718	ENST00000368172		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-5UTR	ENST00000436344	ENST00000392272		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-5UTR	ENST00000436344	ENST00000368173		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-5UTR	ENST00000436344	ENST00000360089		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-intron	ENST00000436344	ENST00000359209		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-intron	ENST00000436344	ENST00000416935		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
5CDS-intron	ENST00000436344	ENST00000368172		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-5UTR	ENST00000582283	ENST00000392272		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-5UTR	ENST00000582283	ENST00000368173		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-5UTR	ENST00000582283	ENST00000360089		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-intron	ENST00000582283	ENST00000359209		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-intron	ENST00000582283	ENST00000416935		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-intron	ENST00000582283	ENST00000368172		ChiTaRS3.1			CV349321	KRT23	chr17	39081605	-	KIRREL	chr1	157963125	+
intron-intron	ENST00000393795	ENST00000393795		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000393795	ENST00000253789		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000393795	ENST00000587209		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000393795	ENST00000590760		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000253789	ENST00000393795		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000253789	ENST00000253789		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000253789	ENST00000587209		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000253789	ENST00000590760		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000587209	ENST00000393795		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000587209	ENST00000253789		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000587209	ENST00000587209		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000587209	ENST00000590760		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000590760	ENST00000393795		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000590760	ENST00000253789		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000590760	ENST00000587209		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000590760	ENST00000590760		ChiTaRS3.1			T27161	PSMC3IP	chr17	40729246	-	PSMC3IP	chr17	40729074	+
intron-intron	ENST00000355827	ENST00000355827		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000355827	ENST00000373054		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000355827	ENST00000373061		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000355827	ENST00000373049		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000355827	ENST00000324765		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373054	ENST00000355827		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373054	ENST00000373054		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373054	ENST00000373061		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373054	ENST00000373049		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373054	ENST00000324765		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373061	ENST00000355827		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373061	ENST00000373054		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373061	ENST00000373061		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373061	ENST00000373049		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373061	ENST00000324765		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373049	ENST00000355827		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373049	ENST00000373054		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373049	ENST00000373061		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373049	ENST00000373049		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000373049	ENST00000324765		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000324765	ENST00000355827		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000324765	ENST00000373054		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000324765	ENST00000373061		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000324765	ENST00000373049		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000324765	ENST00000324765		ChiTaRS3.1			BF985761	DIAPH2	chrX	95961853	-	DIAPH2	chrX	95961808	+
intron-intron	ENST00000361524	ENST00000367903		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000361524	ENST00000534288		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000361524	ENST00000313961		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000361524	ENST00000530507		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000361524	ENST00000527988		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000584787	ENST00000367903		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000584787	ENST00000534288		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000584787	ENST00000313961		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000584787	ENST00000530507		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000584787	ENST00000527988		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000538137	ENST00000367903		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000538137	ENST00000534288		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000538137	ENST00000313961		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000538137	ENST00000530507		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000538137	ENST00000527988		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000579111	ENST00000367903		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000579111	ENST00000534288		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000579111	ENST00000313961		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000579111	ENST00000530507		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-intron	ENST00000579111	ENST00000527988		ChiTaRS3.1			AA659201	ZNF521	chr18	22825831	+	RGS5	chr1	163174321	-
intron-3CDS	ENST00000346916	ENST00000346916		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000346916	ENST00000545507		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000346916	ENST00000333511		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000346916	ENST00000353555		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000346916		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000545507		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000333511		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000353555		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000346916		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000545507		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000333511		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000353555		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000346916		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000545507		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000333511		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000353555		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000346916		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000545507		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000333511		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000353555		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			BG491011	BSG	chr19	580384	-	BSG	chr19	580655	+
3UTR-5UTR	ENST00000378536	ENST00000422447		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-5UTR	ENST00000378536	ENST00000430553		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-5UTR	ENST00000378536	ENST00000396222		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000227157		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000540430		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000379412		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000542179		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000422447		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000430553		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000396222		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000227157		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000540430		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000379412		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000542179		ChiTaRS3.1			BC051361	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-3CDS	ENST00000421182	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000421182	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000421182	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000421182	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357867	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000357867	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000357867	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000323926	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000323926	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000323926	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000336916	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000336916	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000336916	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000354785	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000354785	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000354785	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000357009	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000357009	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000357009	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000346544	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000346544	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000346544	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000345488	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000345488	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000345488	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000359671	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000359671	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000359671	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000446046	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000446046	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000446046	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000443816	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000443816	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000443816	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000432072	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000432072	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000432072	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000356005	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000356005	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000356005	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000490833	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000490833	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000490833	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000421182		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000357867		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000323926		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000336916		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000354785		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000357009		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000346544		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000345488		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000359671		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000446046		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000443816		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000432072		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000426059	ENST00000356005		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000426059	ENST00000490833		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-intron	ENST00000426059	ENST00000426059		ChiTaRS3.1			BP286661	FN1	chr2	216229678	-	FN1	chr2	216243922	-
intron-3CDS	ENST00000402038	ENST00000404241		ChiTaRS3.1			BF850881	PARG	chr10	51592455	+	ATF4	chr22	39918593	+
intron-3CDS	ENST00000402038	ENST00000337304		ChiTaRS3.1			BF850881	PARG	chr10	51592455	+	ATF4	chr22	39918593	+
intron-3CDS	ENST00000402038	ENST00000396680		ChiTaRS3.1			BF850881	PARG	chr10	51592455	+	ATF4	chr22	39918593	+
intron-3CDS	ENST00000492350	ENST00000404241		ChiTaRS3.1			BF850881	PARG	chr10	51592455	+	ATF4	chr22	39918593	+
intron-3CDS	ENST00000492350	ENST00000337304		ChiTaRS3.1			BF850881	PARG	chr10	51592455	+	ATF4	chr22	39918593	+
intron-3CDS	ENST00000492350	ENST00000396680		ChiTaRS3.1			BF850881	PARG	chr10	51592455	+	ATF4	chr22	39918593	+
In-frame	ENST00000409419	ENST00000409419		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409419	ENST00000409587		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409419	ENST00000594085		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409419	ENST00000409735		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409419	ENST00000356508		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409419	ENST00000409281		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409587	ENST00000409419		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409587	ENST00000409587		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409587	ENST00000594085		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409587	ENST00000409735		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409587	ENST00000356508		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409587	ENST00000409281		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
intron-3CDS	ENST00000594085	ENST00000409419		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
intron-3CDS	ENST00000594085	ENST00000409587		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
intron-intron	ENST00000594085	ENST00000594085		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
intron-intron	ENST00000594085	ENST00000409735		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
intron-intron	ENST00000594085	ENST00000356508		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
intron-intron	ENST00000594085	ENST00000409281		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409735	ENST00000409419		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409735	ENST00000409587		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409735	ENST00000594085		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409735	ENST00000409735		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409735	ENST00000356508		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409735	ENST00000409281		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000356508	ENST00000409419		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000356508	ENST00000409587		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000356508	ENST00000594085		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000356508	ENST00000409735		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000356508	ENST00000356508		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000356508	ENST00000409281		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409281	ENST00000409419		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
In-frame	ENST00000409281	ENST00000409587		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409281	ENST00000594085		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409281	ENST00000409735		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409281	ENST00000356508		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
5CDS-intron	ENST00000409281	ENST00000409281		ChiTaRS3.1			AL041531	PLD3	chr19	40880484	-	PLD3	chr19	40882531	+
Frame-shit	ENST00000403681	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
Frame-shit	ENST00000541363	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
Frame-shit	ENST00000393577	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
Frame-shit	ENST00000393578	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
Frame-shit	ENST00000425208	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
Frame-shit	ENST00000536545	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
Frame-shit	ENST00000354636	ENST00000286574		ChiTaRS3.1			EU263622	HMGA2	chr12	66232349	+	WIF1	chr12	65448994	-
intron-3UTR	ENST00000361354	ENST00000361354		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-3UTR	ENST00000361354	ENST00000360982		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-intron	ENST00000361354	ENST00000478449		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-3UTR	ENST00000360982	ENST00000361354		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-3UTR	ENST00000360982	ENST00000360982		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-intron	ENST00000360982	ENST00000478449		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-3UTR	ENST00000478449	ENST00000361354		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-3UTR	ENST00000478449	ENST00000360982		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
intron-intron	ENST00000478449	ENST00000478449		ChiTaRS3.1			BU674621	NCKAP1	chr2	183789839	+	NCKAP1	chr2	183790004	-
5CDS-intron	ENST00000502553	ENST00000366847		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000502553	ENST00000349556		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000502553	ENST00000476078		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000265112	ENST00000366847		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000265112	ENST00000349556		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000265112	ENST00000476078		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000541634	ENST00000366847		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000541634	ENST00000349556		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000541634	ENST00000476078		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000455217	ENST00000366847		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000455217	ENST00000349556		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000455217	ENST00000476078		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000414361	ENST00000366847		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000414361	ENST00000349556		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
5CDS-intron	ENST00000414361	ENST00000476078		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
3UTR-intron	ENST00000509410	ENST00000366847		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
3UTR-intron	ENST00000509410	ENST00000349556		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
3UTR-intron	ENST00000509410	ENST00000476078		ChiTaRS3.1			BQ312341	TARS	chr5	33461281	+	FGFR1OP	chr6	167446254	+
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			H20291	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000548411	ENST00000345662		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000548411	ENST00000315285		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000281474	ENST00000345662		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000281474	ENST00000315285		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000551848	ENST00000345662		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000551848	ENST00000315285		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000550207	ENST00000345662		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000550207	ENST00000315285		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000551086	ENST00000345662		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-intron	ENST00000551086	ENST00000315285		ChiTaRS3.1			T06451	BICD1	chr12	32377092	-	SPAST	chr2	32354343	+
intron-3CDS	ENST00000380934	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380934	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380934	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000380959	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380959	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380959	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000380953	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380953	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380953	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000397575	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000397575	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000397575	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000397581	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000397581	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000397581	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000397579	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000397579	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000397579	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000543693	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000543693	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000543693	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000380924	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380924	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380924	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-3CDS	ENST00000380921	ENST00000524189		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380921	ENST00000521515		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000380921	ENST00000404075		ChiTaRS3.1			DB383011	NFIB	chr9	14082130	+	KIF13B	chr8	28988123	+
intron-intron	ENST00000262241	ENST00000368301		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000361308		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000347559		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000368300		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000368299		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000448611		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000368297		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000473598		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000392353		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000262241	ENST00000496738		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000368301		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000361308		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000347559		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000368300		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000368299		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000448611		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000368297		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000473598		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000392353		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000570597	ENST00000496738		ChiTaRS3.1			AW818381	RCOR1	chr14	103119701	+	LMNA	chr1	156097436	+
intron-intron	ENST00000414371	ENST00000375370		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000414371	ENST00000538138		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000414371	ENST00000465174		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000414371	ENST00000544902		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370784	ENST00000375370		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370784	ENST00000538138		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370784	ENST00000465174		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370784	ENST00000544902		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370785	ENST00000375370		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370785	ENST00000538138		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370785	ENST00000465174		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000370785	ENST00000544902		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000445123	ENST00000375370		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000445123	ENST00000538138		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000445123	ENST00000465174		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000445123	ENST00000544902		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000475361	ENST00000375370		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000475361	ENST00000538138		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000475361	ENST00000465174		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-intron	ENST00000475361	ENST00000544902		ChiTaRS3.1			BF853321	FAM122C	chrX	133974568	-	TFDP1	chr13	114279118	-
intron-3CDS	ENST00000419071	ENST00000402506		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000402045		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000338732		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000222725		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000359574		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000402506		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000402045		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000338732		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000222725		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000359574		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000402506		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000402045		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000338732		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000222725		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000359574		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000402506		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000402045		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000338732		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000222725		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000359574		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000402506		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000402045		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000338732		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000222725		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000359574		ChiTaRS3.1			BF373191	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
Frame-shit	ENST00000311528	ENST00000446044		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000311528	ENST00000497283		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000311528	ENST00000357955		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
Frame-shit	ENST00000567815	ENST00000446044		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000567815	ENST00000497283		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000567815	ENST00000357955		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
In-frame	ENST00000452368	ENST00000446044		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000452368	ENST00000497283		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000452368	ENST00000357955		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
Frame-shit	ENST00000393099	ENST00000446044		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000393099	ENST00000497283		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
5CDS-intron	ENST00000393099	ENST00000357955		ChiTaRS3.1			AA524181	RPL13	chr16	89629431	-	MAPKAPK3	chr3	50683209	-
intron-3CDS	ENST00000444376	ENST00000318006		ChiTaRS3.1			BI023341	HNRNPU	chr1	245019231	+	VPS39	chr15	42479509	+
intron-3CDS	ENST00000444376	ENST00000348544		ChiTaRS3.1			BI023341	HNRNPU	chr1	245019231	+	VPS39	chr15	42479509	+
intron-intron	ENST00000444376	ENST00000568357		ChiTaRS3.1			BI023341	HNRNPU	chr1	245019231	+	VPS39	chr15	42479509	+
intron-3CDS	ENST00000283179	ENST00000318006		ChiTaRS3.1			BI023341	HNRNPU	chr1	245019231	+	VPS39	chr15	42479509	+
intron-3CDS	ENST00000283179	ENST00000348544		ChiTaRS3.1			BI023341	HNRNPU	chr1	245019231	+	VPS39	chr15	42479509	+
intron-intron	ENST00000283179	ENST00000568357		ChiTaRS3.1			BI023341	HNRNPU	chr1	245019231	+	VPS39	chr15	42479509	+
3UTR-3CDS	ENST00000311413	ENST00000311413		ChiTaRS3.1			BU844691	RNF26	chr11	119207154	+	RNF26	chr11	119206249	+
intron-3UTR	ENST00000439817	ENST00000242351		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000439817	ENST00000464606		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000439817	ENST00000471652		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-3UTR	ENST00000361464	ENST00000242351		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000361464	ENST00000464606		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000361464	ENST00000471652		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-3UTR	ENST00000482611	ENST00000242351		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000482611	ENST00000464606		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000482611	ENST00000471652		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-3UTR	ENST00000357797	ENST00000242351		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000357797	ENST00000464606		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000357797	ENST00000471652		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-3UTR	ENST00000370094	ENST00000242351		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000370094	ENST00000464606		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000370094	ENST00000471652		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-3UTR	ENST00000419011	ENST00000242351		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000419011	ENST00000464606		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000419011	ENST00000471652		ChiTaRS3.1			AW979061	MGEA5	chr10	103552338	-	ZC3HAV1	chr7	138728577	-
intron-intron	ENST00000540480	ENST00000340666		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000540480	ENST00000295987		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000537664	ENST00000340666		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000537664	ENST00000295987		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000476287	ENST00000340666		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000476287	ENST00000295987		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000252510	ENST00000340666		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000252510	ENST00000295987		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000496635	ENST00000340666		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
intron-intron	ENST00000496635	ENST00000295987		ChiTaRS3.1			DB289761	FAM120B	chr6	170653746	-	SYN1	chrX	47445377	+
Frame-shit	ENST00000377046	ENST00000377046		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000377046	ENST00000352980		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000377046	ENST00000341318		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000377046	ENST00000530446		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000377046	ENST00000534650		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000377046	ENST00000525204		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000377046		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000352980		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000341318		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000352980	ENST00000530446		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000352980	ENST00000534650		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000352980	ENST00000525204		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000377046		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000352980		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000341318		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000341318	ENST00000530446		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000341318	ENST00000534650		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000341318	ENST00000525204		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000377046		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000352980		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000341318		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000530446	ENST00000530446		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000530446	ENST00000534650		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000530446	ENST00000525204		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000377046		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000352980		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000341318		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
Frame-shit	ENST00000534650	ENST00000530446		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-5UTR	ENST00000534650	ENST00000534650		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
5CDS-3UTR	ENST00000534650	ENST00000525204		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000377046		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000352980		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000341318		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000525204	ENST00000530446		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-5UTR	ENST00000525204	ENST00000534650		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3UTR	ENST00000525204	ENST00000525204		ChiTaRS3.1			BE731511	KAT5	chr11	65482186	+	KAT5	chr11	65480241	+
intron-3CDS	ENST00000361731	ENST00000361731		ChiTaRS3.1			CF127281	SFT2D1	chr6	166733630	+	SFT2D1	chr6	166738068	-
intron-5UTR	ENST00000361731	ENST00000487841		ChiTaRS3.1			CF127281	SFT2D1	chr6	166733630	+	SFT2D1	chr6	166738068	-
intron-3CDS	ENST00000487841	ENST00000361731		ChiTaRS3.1			CF127281	SFT2D1	chr6	166733630	+	SFT2D1	chr6	166738068	-
intron-5UTR	ENST00000487841	ENST00000487841		ChiTaRS3.1			CF127281	SFT2D1	chr6	166733630	+	SFT2D1	chr6	166738068	-
Frame-shit	ENST00000406610	ENST00000406610		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000462231		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000349953		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000358768		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000351153		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000488622		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-3CDS	ENST00000462231	ENST00000406610		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000462231		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000349953		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000358768		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000351153		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000488622		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000349953	ENST00000406610		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000462231		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000349953		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000358768		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000351153		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000488622		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000358768	ENST00000406610		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000462231		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000349953		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000358768		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000351153		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000488622		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000351153	ENST00000406610		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000462231		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000349953		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000358768		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000351153		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000488622		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-3CDS	ENST00000488622	ENST00000406610		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000462231		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000349953		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000358768		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000351153		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000488622		ChiTaRS3.1			AF428251	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000545797	ENST00000253506		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000591814		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000397790		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000587635		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000427363		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000542384		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000318065		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000545796		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000592223		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000329101		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000586434		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000545797	ENST00000590172		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000253506		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000591814		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000397790		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000587635		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000427363		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000542384		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000318065		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000545796		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000592223		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000329101		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000586434		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-intron	ENST00000301264	ENST00000590172		ChiTaRS3.1			BI045301	DAPK3	chr19	3964370	+	NFATC1	chr18	77272307	-
intron-3CDS	ENST00000394440	ENST00000394440		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000394440	ENST00000461540		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000394440	ENST00000544079		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000394440	ENST00000544185		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000394440	ENST00000538252		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-3CDS	ENST00000461540	ENST00000394440		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000461540	ENST00000461540		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000461540	ENST00000544079		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000461540	ENST00000544185		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000461540	ENST00000538252		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-3CDS	ENST00000544079	ENST00000394440		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544079	ENST00000461540		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544079	ENST00000544079		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544079	ENST00000544185		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544079	ENST00000538252		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-3CDS	ENST00000544185	ENST00000394440		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544185	ENST00000461540		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544185	ENST00000544079		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544185	ENST00000544185		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000544185	ENST00000538252		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-3CDS	ENST00000538252	ENST00000394440		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000538252	ENST00000461540		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000538252	ENST00000544079		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000538252	ENST00000544185		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-5UTR	ENST00000538252	ENST00000538252		ChiTaRS3.1			CB243441	CCT4	chr2	62095709	+	CCT4	chr2	62096663	-
intron-3UTR	ENST00000330978	ENST00000320892		ChiTaRS3.1			BF873321	BOLA2	chr16	30093841	-	RNF144A	chr2	7184140	-
intron-intron	ENST00000330978	ENST00000467276		ChiTaRS3.1			BF873321	BOLA2	chr16	30093841	-	RNF144A	chr2	7184140	-
intron-intron	ENST00000252242	ENST00000458578		ChiTaRS3.1			BM552241	KRT5	chr12	52908423	+	UBE2L3	chr22	21976957	+
intron-3UTR	ENST00000252242	ENST00000342192		ChiTaRS3.1			BM552241	KRT5	chr12	52908423	+	UBE2L3	chr22	21976957	+
intron-intron	ENST00000252242	ENST00000545681		ChiTaRS3.1			BM552241	KRT5	chr12	52908423	+	UBE2L3	chr22	21976957	+
intron-3CDS	ENST00000367689	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367689	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367689	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367689	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367689	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000367689	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000357444	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000357444	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000357444	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000357444	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000357444	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000357444	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000251507	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000251507	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000251507	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000251507	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000251507	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000251507	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000325589	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000325589	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000325589	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000325589	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000325589	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000325589	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367686	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367686	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367686	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367686	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367686	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000367686	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367687	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367687	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367687	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367687	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367687	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000367687	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000347255	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000347255	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000347255	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000347255	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000347255	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000347255	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000489615	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000489615	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000489615	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000489615	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000489615	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000489615	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000478442	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000478442	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000478442	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000478442	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000478442	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000478442	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000486220	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000486220	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000486220	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000486220	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000486220	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000486220	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000392064	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000392064	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000392064	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000392064	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000392064	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000392064	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367688	ENST00000295897		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367688	ENST00000415165		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367688	ENST00000503124		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367688	ENST00000509063		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3CDS	ENST00000367688	ENST00000401494		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-intron	ENST00000367688	ENST00000505649		ChiTaRS3.1			AI064841	RABGAP1L	chr1	174189320	-	ALB	chr4	74283248	+
intron-3UTR	ENST00000536255	ENST00000534336		ChiTaRS3.1			AV723471	RPAIN	chr17	5336086	-	MALAT1	chr11	65269088	-
3UTR-3UTR	ENST00000381208	ENST00000534336		ChiTaRS3.1			AV723471	RPAIN	chr17	5336086	-	MALAT1	chr11	65269088	-
3UTR-3UTR	ENST00000381209	ENST00000534336		ChiTaRS3.1			AV723471	RPAIN	chr17	5336086	-	MALAT1	chr11	65269088	-
intron-3UTR	ENST00000327154	ENST00000534336		ChiTaRS3.1			AV723471	RPAIN	chr17	5336086	-	MALAT1	chr11	65269088	-
intron-3UTR	ENST00000405578	ENST00000534336		ChiTaRS3.1			AV723471	RPAIN	chr17	5336086	-	MALAT1	chr11	65269088	-
intron-3UTR	ENST00000574003	ENST00000534336		ChiTaRS3.1			AV723471	RPAIN	chr17	5336086	-	MALAT1	chr11	65269088	-
intron-intron	ENST00000295934	ENST00000541502		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000295934	ENST00000409404		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000295934	ENST00000298047		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000295934	ENST00000525166		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000295934	ENST00000533797		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000295934	ENST00000489716		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000473921	ENST00000541502		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000473921	ENST00000409404		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000473921	ENST00000298047		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000473921	ENST00000525166		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000473921	ENST00000533797		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-intron	ENST00000473921	ENST00000489716		ChiTaRS3.1			U82811	HESX1	chr3	57232220	-	FAT3	chr11	92169129	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911251	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911251	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911251	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911251	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
In-frame	ENST00000316448	ENST00000316448		ChiTaRS3.1			BQ304201	CALR	chr19	13050926	+	CALR	chr19	13051175	-
intron-3CDS	ENST00000324306	ENST00000324306		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000324306	ENST00000426572		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000324306	ENST00000535170		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000426572	ENST00000324306		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000426572	ENST00000426572		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000426572	ENST00000535170		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000535170	ENST00000324306		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000535170	ENST00000426572		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000535170	ENST00000535170		ChiTaRS3.1			BE709591	ZKSCAN1	chr7	99628059	+	ZKSCAN1	chr7	99627966	-
intron-3CDS	ENST00000438447	ENST00000554752		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-3CDS	ENST00000438447	ENST00000555993		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000438447	ENST00000553414		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000438447	ENST00000381250		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000438447	ENST00000554146		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-3CDS	ENST00000282493	ENST00000554752		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-3CDS	ENST00000282493	ENST00000555993		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000282493	ENST00000553414		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000282493	ENST00000381250		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000282493	ENST00000554146		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-3CDS	ENST00000513490	ENST00000554752		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-3CDS	ENST00000513490	ENST00000555993		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000513490	ENST00000553414		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000513490	ENST00000381250		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
intron-intron	ENST00000513490	ENST00000554146		ChiTaRS3.1			BQ311551	PDZD2	chr5	31731224	+	MAP3K9	chr14	71267690	-
3UTR-3UTR	ENST00000304636	ENST00000304636		ChiTaRS3.1			CN367151	COL3A1	chr2	189876711	-	COL3A1	chr2	189876843	+
3UTR-3UTR	ENST00000304636	ENST00000317840		ChiTaRS3.1			CN367151	COL3A1	chr2	189876711	-	COL3A1	chr2	189876843	+
3UTR-3UTR	ENST00000317840	ENST00000304636		ChiTaRS3.1			CN367151	COL3A1	chr2	189876711	-	COL3A1	chr2	189876843	+
3UTR-3UTR	ENST00000317840	ENST00000317840		ChiTaRS3.1			CN367151	COL3A1	chr2	189876711	-	COL3A1	chr2	189876843	+
intron-3UTR	ENST00000394095	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394095	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394095	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394095	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394095	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394095	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394095	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394091	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394091	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394091	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394091	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394091	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394091	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394091	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394094	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394094	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394094	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394094	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394094	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394094	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394094	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000358203	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000358203	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000358203	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000358203	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000358203	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000358203	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000358203	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000314261	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000314261	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000314261	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000314261	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000314261	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000314261	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000314261	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000348610	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000348610	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000348610	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000348610	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000348610	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000348610	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000348610	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394085	ENST00000394095		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394085	ENST00000394091		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394085	ENST00000394094		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394085	ENST00000358203		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-3UTR	ENST00000394085	ENST00000314261		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394085	ENST00000348610		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
intron-intron	ENST00000394085	ENST00000394085		ChiTaRS3.1			BG912251	SENP7	chr3	101043526	+	SENP7	chr3	101043457	-
5CDS-3UTR	ENST00000372771	ENST00000373625		ChiTaRS3.1			BE176401	RLF	chr1	40704858	-	KPNA6	chr1	32639538	+
5CDS-intron	ENST00000372771	ENST00000537234		ChiTaRS3.1			BE176401	RLF	chr1	40704858	-	KPNA6	chr1	32639538	+
5CDS-intron	ENST00000372771	ENST00000469790		ChiTaRS3.1			BE176401	RLF	chr1	40704858	-	KPNA6	chr1	32639538	+
5CDS-intron	ENST00000372771	ENST00000545542		ChiTaRS3.1			BE176401	RLF	chr1	40704858	-	KPNA6	chr1	32639538	+
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			AW798061	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000456860	ENST00000367462		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000456860	ENST00000534846		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000456860	ENST00000463404		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000322282	ENST00000367462		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000322282	ENST00000534846		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000322282	ENST00000463404		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000529750	ENST00000367462		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000529750	ENST00000534846		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000529750	ENST00000463404		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000450171	ENST00000367462		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000450171	ENST00000534846		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-intron	ENST00000450171	ENST00000463404		ChiTaRS3.1			CV403191	GRAMD1B	chr11	123431420	-	BRINP3	chr1	190414666	+
intron-3UTR	ENST00000340855	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000340855	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000340855	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000340855	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000340855	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000537071	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000537071	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000537071	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000537071	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000537071	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000541269	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000541269	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000541269	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000541269	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000541269	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000422081	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000422081	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000422081	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000422081	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000422081	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000370441	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000370441	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000370441	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000370441	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000370441	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000490775	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000490775	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000490775	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000490775	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000490775	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000370443	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000370443	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000370443	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000370443	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000370443	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000427113	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000427113	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000427113	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000427113	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000427113	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000428056	ENST00000265192		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000428056	ENST00000511381		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000428056	ENST00000511706		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3UTR	ENST00000428056	ENST00000394795		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-intron	ENST00000428056	ENST00000510080		ChiTaRS3.1			BP384531	IDS	chrX	148564599	+	PAIP2	chr5	138705082	+
intron-3CDS	ENST00000367889	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367889	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367889	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367889	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367888	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367888	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367888	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367888	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367885	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367885	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367885	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367885	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367884	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367884	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367884	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367884	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367883	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367883	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367883	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367883	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367886	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367886	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367886	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000367886	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000461759	ENST00000006275		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000461759	ENST00000588062		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000461759	ENST00000585934		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000461759	ENST00000592647		ChiTaRS3.1			BG956101	MGST3	chr1	165623821	-	TRAPPC6A	chr19	45667474	-
intron-3CDS	ENST00000176643	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000176643	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000176643	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3CDS	ENST00000581518	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000581518	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000581518	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3CDS	ENST00000395575	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000395575	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000395575	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3CDS	ENST00000339618	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000339618	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000339618	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3CDS	ENST00000579855	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000579855	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000579855	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3CDS	ENST00000571163	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000571163	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000571163	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3CDS	ENST00000574597	ENST00000322213		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000574597	ENST00000469129		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-intron	ENST00000574597	ENST00000375340		ChiTaRS3.1			BF845221	ALDH3A2	chr17	19559029	+	SMC1A	chrX	53438739	+
intron-3UTR	ENST00000209875	ENST00000315869		ChiTaRS3.1			BE167921	CBX5	chr12	54625845	-	TFE3	chrX	48887159	+
intron-intron	ENST00000209875	ENST00000487451		ChiTaRS3.1			BE167921	CBX5	chr12	54625845	-	TFE3	chrX	48887159	+
intron-3UTR	ENST00000439541	ENST00000315869		ChiTaRS3.1			BE167921	CBX5	chr12	54625845	-	TFE3	chrX	48887159	+
intron-intron	ENST00000439541	ENST00000487451		ChiTaRS3.1			BE167921	CBX5	chr12	54625845	-	TFE3	chrX	48887159	+
intron-3UTR	ENST00000550411	ENST00000315869		ChiTaRS3.1			BE167921	CBX5	chr12	54625845	-	TFE3	chrX	48887159	+
intron-intron	ENST00000550411	ENST00000487451		ChiTaRS3.1			BE167921	CBX5	chr12	54625845	-	TFE3	chrX	48887159	+
intron-3UTR	ENST00000254806	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000585462	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000591399	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000590221	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000344296	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000433525	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000590450	ENST00000331825		ChiTaRS3.1			DR979251	WBP2	chr17	73842364	+	FTL	chr19	49469995	+
intron-3UTR	ENST00000371828	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371828	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371828	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371828	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371828	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371802	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371856	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000347458	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000340954	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371792	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000356978		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000447653		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000360426	ENST00000555132		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000553542		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000544280		ChiTaRS3.1			CB164141	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3CDS	ENST00000395443	ENST00000370951		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000395443	ENST00000405432		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000395443	ENST00000370950		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-intron	ENST00000395443	ENST00000454435		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000395443	ENST00000436161		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000395443	ENST00000484162		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000395443	ENST00000370949		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000357496	ENST00000370951		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000357496	ENST00000405432		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000357496	ENST00000370950		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-intron	ENST00000357496	ENST00000454435		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000357496	ENST00000436161		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000357496	ENST00000484162		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000357496	ENST00000370949		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000424300	ENST00000370951		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000424300	ENST00000405432		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000424300	ENST00000370950		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-intron	ENST00000424300	ENST00000454435		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000424300	ENST00000436161		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000424300	ENST00000484162		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000424300	ENST00000370949		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000479449	ENST00000370951		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000479449	ENST00000405432		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3CDS	ENST00000479449	ENST00000370950		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-intron	ENST00000479449	ENST00000454435		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000479449	ENST00000436161		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000479449	ENST00000484162		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
intron-3UTR	ENST00000479449	ENST00000370949		ChiTaRS3.1			BF351361	QRICH1	chr3	49094368	-	SRSF11	chr1	70700409	-
3UTR-3CDS	ENST00000262325	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
3UTR-3CDS	ENST00000262325	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
3UTR-3CDS	ENST00000262325	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
3UTR-3CDS	ENST00000262325	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
3UTR-3CDS	ENST00000262325	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
3UTR-3CDS	ENST00000262325	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
3UTR-3UTR	ENST00000262325	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000592545	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000592545	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000592545	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000592545	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000592545	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000592545	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3UTR	ENST00000592545	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000538556	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000538556	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000538556	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000538556	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000538556	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000538556	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3UTR	ENST00000538556	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000312678	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000312678	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000312678	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000312678	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000312678	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000312678	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3UTR	ENST00000312678	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000589344	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000589344	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000589344	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000589344	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000589344	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000589344	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3UTR	ENST00000589344	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000537622	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000537622	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000537622	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000537622	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000537622	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000537622	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3UTR	ENST00000537622	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000545922	ENST00000262325		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000545922	ENST00000592545		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000545922	ENST00000538556		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000545922	ENST00000312678		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000545922	ENST00000589344		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3CDS	ENST00000545922	ENST00000537622		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-3UTR	ENST00000545922	ENST00000545922		ChiTaRS3.1			BP279701	AP2B1	chr17	34052618	+	AP2B1	chr17	34001207	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582401	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000541043	ENST00000541043		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000541043	ENST00000379923		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000541043	ENST00000309951		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000379923	ENST00000541043		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000379923	ENST00000379923		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000379923	ENST00000309951		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000309951	ENST00000541043		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000309951	ENST00000379923		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000309951	ENST00000309951		ChiTaRS3.1			AA572951	ACO1	chr9	32416358	-	ACO1	chr9	32416441	+
intron-intron	ENST00000322954	ENST00000375643		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000322954	ENST00000375629		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000322954	ENST00000443024		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000322954	ENST00000447699		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000322954	ENST00000375627		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000322954	ENST00000474340		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000539319	ENST00000375643		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000539319	ENST00000375629		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000539319	ENST00000443024		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000539319	ENST00000447699		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000539319	ENST00000375627		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000539319	ENST00000474340		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000379983	ENST00000375643		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000379983	ENST00000375629		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000379983	ENST00000443024		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000379983	ENST00000447699		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000379983	ENST00000375627		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000379983	ENST00000474340		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000560441	ENST00000375643		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000560441	ENST00000375629		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000560441	ENST00000443024		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000560441	ENST00000447699		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000560441	ENST00000375627		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000560441	ENST00000474340		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000559183	ENST00000375643		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000559183	ENST00000375629		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000559183	ENST00000443024		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000559183	ENST00000447699		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000559183	ENST00000375627		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
intron-intron	ENST00000559183	ENST00000474340		ChiTaRS3.1			AI685341	UACA	chr15	70947647	+	IARS	chr9	95020834	+
Frame-shit	ENST00000317829	ENST00000394579		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
Frame-shit	ENST00000317829	ENST00000225174		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
5CDS-intron	ENST00000317829	ENST00000492149		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
Frame-shit	ENST00000317837	ENST00000394579		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
Frame-shit	ENST00000317837	ENST00000225174		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
5CDS-intron	ENST00000317837	ENST00000492149		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
Frame-shit	ENST00000433060	ENST00000394579		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
Frame-shit	ENST00000433060	ENST00000225174		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
5CDS-intron	ENST00000433060	ENST00000492149		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
intron-3CDS	ENST00000539727	ENST00000394579		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
intron-3CDS	ENST00000539727	ENST00000225174		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
intron-intron	ENST00000539727	ENST00000492149		ChiTaRS3.1			BF738681	AMOTL1	chr11	94533095	-	PPIF	chr10	81111311	-
intron-3UTR	ENST00000400454	ENST00000395211		ChiTaRS3.1			T80351	DSCAM	chr21	41955916	-	TMOD1	chr9	100363842	-
intron-3UTR	ENST00000400454	ENST00000259365		ChiTaRS3.1			T80351	DSCAM	chr21	41955916	-	TMOD1	chr9	100363842	-
intron-intron	ENST00000400454	ENST00000375175		ChiTaRS3.1			T80351	DSCAM	chr21	41955916	-	TMOD1	chr9	100363842	-
intron-3UTR	ENST00000521022	ENST00000229264		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000521022	ENST00000435982		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000416984	ENST00000229264		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000416984	ENST00000435982		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000521777	ENST00000229264		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000521777	ENST00000435982		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000397363	ENST00000229264		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000397363	ENST00000435982		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000521070	ENST00000229264		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000521070	ENST00000435982		ChiTaRS3.1			BM715141	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000338086	ENST00000228705		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000338086	ENST00000551214		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000319801	ENST00000228705		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000319801	ENST00000551214		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000361078	ENST00000228705		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000361078	ENST00000551214		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000536417	ENST00000228705		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000536417	ENST00000551214		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000403432	ENST00000228705		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000403432	ENST00000551214		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000420234	ENST00000228705		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000420234	ENST00000551214		ChiTaRS3.1			BI022001	PUM2	chr2	20449465	+	PPM1H	chr12	63063150	-
intron-intron	ENST00000233190	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000233190	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000423725	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000457011	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000440274	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000455934	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000449699	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376170		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000359188		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376142		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376139		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376160		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376166		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376138		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000355394		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000490841		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376137		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000346832		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000536334		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376134		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000376140		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-intron	ENST00000432169	ENST00000473481		ChiTaRS3.1			BE896021	NDUFS1	chr2	207021967	-	ABI1	chr10	27046808	-
intron-3UTR	ENST00000444631	ENST00000507606		ChiTaRS3.1			BE843441	SARNP	chr12	56211285	+	C7orf73	chr7	135359100	-
intron-intron	ENST00000444631	ENST00000422968		ChiTaRS3.1			BE843441	SARNP	chr12	56211285	+	C7orf73	chr7	135359100	-
intron-3UTR	ENST00000336133	ENST00000507606		ChiTaRS3.1			BE843441	SARNP	chr12	56211285	+	C7orf73	chr7	135359100	-
intron-intron	ENST00000336133	ENST00000422968		ChiTaRS3.1			BE843441	SARNP	chr12	56211285	+	C7orf73	chr7	135359100	-
intron-3UTR	ENST00000552080	ENST00000507606		ChiTaRS3.1			BE843441	SARNP	chr12	56211285	+	C7orf73	chr7	135359100	-
intron-intron	ENST00000552080	ENST00000422968		ChiTaRS3.1			BE843441	SARNP	chr12	56211285	+	C7orf73	chr7	135359100	-
3UTR-intron	ENST00000023939	ENST00000481781		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
3UTR-intron	ENST00000023939	ENST00000397270		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
3UTR-intron	ENST00000395881	ENST00000481781		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
3UTR-intron	ENST00000395881	ENST00000397270		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-intron	ENST00000357348	ENST00000481781		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-intron	ENST00000357348	ENST00000397270		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-intron	ENST00000484084	ENST00000481781		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-intron	ENST00000484084	ENST00000397270		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-intron	ENST00000435342	ENST00000481781		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-intron	ENST00000435342	ENST00000397270		ChiTaRS3.1			BG004721	RTFDC1	chr20	55093738	+	INS-IGF2	chr11	2153827	-
intron-3CDS	ENST00000452825	ENST00000452825		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000452825	ENST00000375401		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000452825	ENST00000404049		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000452825	ENST00000375379		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000452825	ENST00000375383		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-intron	ENST00000452825	ENST00000465402		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375401	ENST00000452825		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375401	ENST00000375401		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375401	ENST00000404049		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375401	ENST00000375379		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375401	ENST00000375383		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-intron	ENST00000375401	ENST00000465402		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000404049	ENST00000452825		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000404049	ENST00000375401		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000404049	ENST00000404049		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000404049	ENST00000375379		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000404049	ENST00000375383		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-intron	ENST00000404049	ENST00000465402		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375379	ENST00000452825		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375379	ENST00000375401		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375379	ENST00000404049		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375379	ENST00000375379		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375379	ENST00000375383		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-intron	ENST00000375379	ENST00000465402		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375383	ENST00000452825		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375383	ENST00000375401		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375383	ENST00000404049		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375383	ENST00000375379		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000375383	ENST00000375383		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-intron	ENST00000375383	ENST00000465402		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000465402	ENST00000452825		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000465402	ENST00000375401		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000465402	ENST00000404049		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000465402	ENST00000375379		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-3CDS	ENST00000465402	ENST00000375383		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
intron-intron	ENST00000465402	ENST00000465402		ChiTaRS3.1			BF327651	KDM5C	chrX	53230852	+	KDM5C	chrX	53228185	+
Frame-shit	ENST00000403681	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
Frame-shit	ENST00000541363	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
Frame-shit	ENST00000393577	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
Frame-shit	ENST00000393578	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
Frame-shit	ENST00000425208	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
Frame-shit	ENST00000536545	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
Frame-shit	ENST00000354636	ENST00000286574		ChiTaRS3.1			EU263621	HMGA2	chr12	66232349	+	WIF1	chr12	65462685	-
intron-3CDS	ENST00000383578	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000383578	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000319815	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000319815	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000251101	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000251101	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000340116	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000340116	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000580982	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000580982	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000583973	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000583973	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000539164	ENST00000380075		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-3CDS	ENST00000539164	ENST00000296098		ChiTaRS3.1			BF371811	ENOSF1	chr18	708851	-	TRIM54	chr2	27522229	-
intron-intron	ENST00000399782	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000399782	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-3UTR	ENST00000399782	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000317582	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-3UTR	ENST00000317582	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000543133	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-3UTR	ENST00000543133	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000538149	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-3UTR	ENST00000538149	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000337612	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-3UTR	ENST00000337612	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000493680	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-3UTR	ENST00000493680	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000355028	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-3UTR	ENST00000355028	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000418951	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-3UTR	ENST00000418951	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000399782		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000317582		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000543133		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000538149		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000337612		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000493680		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000355028		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-intron	ENST00000485631	ENST00000418951		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
3UTR-3UTR	ENST00000485631	ENST00000485631		ChiTaRS3.1			AF183411	BCL2L13	chr22	18210315	-	BCL2L13	chr22	18189551	+
intron-intron	ENST00000330498	ENST00000330498		ChiTaRS3.1			BG913471	SLC5A2	chr16	31501070	+	SLC5A2	chr16	31500991	-
intron-3UTR	ENST00000330498	ENST00000564197		ChiTaRS3.1			BG913471	SLC5A2	chr16	31501070	+	SLC5A2	chr16	31500991	-
intron-intron	ENST00000564197	ENST00000330498		ChiTaRS3.1			BG913471	SLC5A2	chr16	31501070	+	SLC5A2	chr16	31500991	-
intron-3UTR	ENST00000564197	ENST00000564197		ChiTaRS3.1			BG913471	SLC5A2	chr16	31501070	+	SLC5A2	chr16	31500991	-
intron-intron	ENST00000598441	ENST00000307142		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000598441	ENST00000448416		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000598441	ENST00000429713		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000598441	ENST00000434046		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000221448	ENST00000307142		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000221448	ENST00000448416		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000221448	ENST00000429713		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-intron	ENST00000221448	ENST00000434046		ChiTaRS3.1			BQ376271	SNRNP70	chr19	49608716	+	SYNPO2	chr4	119972609	+
intron-3CDS	ENST00000011292	ENST00000011292		ChiTaRS3.1			W40131	CPA1	chr7	130023523	-	CPA1	chr7	130023582	+
intron-3CDS	ENST00000011292	ENST00000484324		ChiTaRS3.1			W40131	CPA1	chr7	130023523	-	CPA1	chr7	130023582	+
intron-3CDS	ENST00000484324	ENST00000011292		ChiTaRS3.1			W40131	CPA1	chr7	130023523	-	CPA1	chr7	130023582	+
intron-3CDS	ENST00000484324	ENST00000484324		ChiTaRS3.1			W40131	CPA1	chr7	130023523	-	CPA1	chr7	130023582	+
intron-3UTR	ENST00000545683	ENST00000441493		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000400561		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000444520		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000414725		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000383094		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000207726		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000429452		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000585038		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000545683	ENST00000580469		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-3UTR	ENST00000427880	ENST00000441493		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000400561		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000444520		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000414725		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000383094		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000207726		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000429452		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000585038		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000427880	ENST00000580469		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-3UTR	ENST00000469483	ENST00000441493		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000400561		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000444520		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000414725		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000383094		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000207726		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000429452		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000585038		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000469483	ENST00000580469		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-3UTR	ENST00000369167	ENST00000441493		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000400561		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000444520		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000414725		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000383094		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000207726		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000429452		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000585038		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000369167	ENST00000580469		ChiTaRS3.1			DA087301	HIST2H2BF	chr1	149764620	+	MICAL3	chr22	18272635	-
intron-intron	ENST00000391976	ENST00000349394		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000391976	ENST00000555154		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000310931	ENST00000349394		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000310931	ENST00000555154		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000391975	ENST00000349394		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000391975	ENST00000555154		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000427183	ENST00000349394		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000427183	ENST00000555154		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000476807	ENST00000349394		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-intron	ENST00000476807	ENST00000555154		ChiTaRS3.1			BE715731	HDLBP	chr2	242170361	+	NXPH4	chr12	57616883	-
intron-3CDS	ENST00000370794	ENST00000370794		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370794	ENST00000357428		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370794	ENST00000370793		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000370794	ENST00000370792		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000370794	ENST00000528150		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000357428	ENST00000370794		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000357428	ENST00000357428		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000357428	ENST00000370793		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000357428	ENST00000370792		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000357428	ENST00000528150		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370793	ENST00000370794		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370793	ENST00000357428		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370793	ENST00000370793		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000370793	ENST00000370792		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000370793	ENST00000528150		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370792	ENST00000370794		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370792	ENST00000357428		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000370792	ENST00000370793		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000370792	ENST00000370792		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000370792	ENST00000528150		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000528150	ENST00000370794		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000528150	ENST00000357428		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-3CDS	ENST00000528150	ENST00000370793		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000528150	ENST00000370792		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000528150	ENST00000528150		ChiTaRS3.1			AA255861	USP33	chr1	78183598	+	USP33	chr1	78187600	-
intron-intron	ENST00000583129	ENST00000583129		ChiTaRS3.1			BE180701	MIR548O2	chr8	29931393	-	MIR548O2	chr8	29927222	+
intron-3CDS	ENST00000408771	ENST00000272427		ChiTaRS3.1			BF086581	MIR548H3	chr6	97593033	-	EXOC6B	chr2	72968497	+
intron-intron	ENST00000408771	ENST00000490919		ChiTaRS3.1			BF086581	MIR548H3	chr6	97593033	-	EXOC6B	chr2	72968497	+
intron-intron	ENST00000408771	ENST00000410104		ChiTaRS3.1			BF086581	MIR548H3	chr6	97593033	-	EXOC6B	chr2	72968497	+
intron-intron	ENST00000538184	ENST00000538184		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000538184	ENST00000502274		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000538184	ENST00000515425		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000538184	ENST00000512049		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000538184	ENST00000394358		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000538184	ENST00000513340		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000502274	ENST00000538184		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000502274	ENST00000502274		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000502274	ENST00000515425		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000502274	ENST00000512049		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000502274	ENST00000394358		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000502274	ENST00000513340		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000515425	ENST00000538184		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000515425	ENST00000502274		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000515425	ENST00000515425		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000515425	ENST00000512049		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000515425	ENST00000394358		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000515425	ENST00000513340		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000512049	ENST00000538184		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000512049	ENST00000502274		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000512049	ENST00000515425		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000512049	ENST00000512049		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000512049	ENST00000394358		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000512049	ENST00000513340		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000394358	ENST00000538184		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000394358	ENST00000502274		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000394358	ENST00000515425		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000394358	ENST00000512049		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000394358	ENST00000394358		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000394358	ENST00000513340		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000513340	ENST00000538184		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000513340	ENST00000502274		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000513340	ENST00000515425		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000513340	ENST00000512049		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000513340	ENST00000394358		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
intron-intron	ENST00000513340	ENST00000513340		ChiTaRS3.1			AJ413271	SH3TC2	chr5	148230794	+	SH3TC2	chr5	148214469	+
3UTR-intron	ENST00000329153	ENST00000343516		ChiTaRS3.1			BF373101	PLEKHH1	chr14	68055538	-	CASKIN1	chr16	2242866	+
3UTR-intron	ENST00000329153	ENST00000564289		ChiTaRS3.1			BF373101	PLEKHH1	chr14	68055538	-	CASKIN1	chr16	2242866	+
intron-intron	ENST00000417684	ENST00000343516		ChiTaRS3.1			BF373101	PLEKHH1	chr14	68055538	-	CASKIN1	chr16	2242866	+
intron-intron	ENST00000417684	ENST00000564289		ChiTaRS3.1			BF373101	PLEKHH1	chr14	68055538	-	CASKIN1	chr16	2242866	+
intron-intron	ENST00000559832	ENST00000343516		ChiTaRS3.1			BF373101	PLEKHH1	chr14	68055538	-	CASKIN1	chr16	2242866	+
intron-intron	ENST00000559832	ENST00000564289		ChiTaRS3.1			BF373101	PLEKHH1	chr14	68055538	-	CASKIN1	chr16	2242866	+
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA726651	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000529639	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000529639	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000529639	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000531743	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000531743	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000531743	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000525297	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000525297	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000525297	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000527548	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000527548	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000527548	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000279259	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000279259	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000279259	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000529259	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000529259	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000529259	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000434372	ENST00000221957		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000434372	ENST00000592528		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000434372	ENST00000585479		ChiTaRS3.1			AJ712941	FAU	chr11	64888257	-	PLIN3	chr19	4839219	-
intron-3CDS	ENST00000570123	ENST00000216034		ChiTaRS3.1			AA740171	COX4I1	chr16	85840356	-	TOMM22	chr22	39078421	-
3UTR-3CDS	ENST00000568794	ENST00000216034		ChiTaRS3.1			AA740171	COX4I1	chr16	85840356	-	TOMM22	chr22	39078421	-
Frame-shit	ENST00000253452	ENST00000216034		ChiTaRS3.1			AA740171	COX4I1	chr16	85840356	-	TOMM22	chr22	39078421	-
Frame-shit	ENST00000562336	ENST00000216034		ChiTaRS3.1			AA740171	COX4I1	chr16	85840356	-	TOMM22	chr22	39078421	-
Frame-shit	ENST00000561569	ENST00000216034		ChiTaRS3.1			AA740171	COX4I1	chr16	85840356	-	TOMM22	chr22	39078421	-
3UTR-3CDS	ENST00000564903	ENST00000216034		ChiTaRS3.1			AA740171	COX4I1	chr16	85840356	-	TOMM22	chr22	39078421	-
intron-3CDS	ENST00000326799	ENST00000254900		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000326799	ENST00000230901		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000326799	ENST00000402931		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000326799	ENST00000411594		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000326799	ENST00000455658		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000326799	ENST00000515014		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000376016	ENST00000254900		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000376016	ENST00000230901		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000376016	ENST00000402931		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000376016	ENST00000411594		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000376016	ENST00000455658		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000376016	ENST00000515014		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000375972	ENST00000254900		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000375972	ENST00000230901		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000375972	ENST00000402931		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000375972	ENST00000411594		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000375972	ENST00000455658		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000375972	ENST00000515014		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000463270	ENST00000254900		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000463270	ENST00000230901		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000463270	ENST00000402931		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000463270	ENST00000411594		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000463270	ENST00000455658		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000463270	ENST00000515014		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000477432	ENST00000254900		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000477432	ENST00000230901		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-3CDS	ENST00000477432	ENST00000402931		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000477432	ENST00000411594		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000477432	ENST00000455658		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000477432	ENST00000515014		ChiTaRS3.1			BE939651	YME1L1	chr10	27405194	+	BRD8	chr5	137502410	-
intron-intron	ENST00000418331	ENST00000418331		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000418331	ENST00000440289		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000418331	ENST00000526550		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000440289	ENST00000418331		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000440289	ENST00000440289		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000440289	ENST00000526550		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000526550	ENST00000418331		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000526550	ENST00000440289		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000526550	ENST00000526550		ChiTaRS3.1			BE160331	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-3CDS	ENST00000381232	ENST00000379378		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-intron	ENST00000381232	ENST00000564718		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-3CDS	ENST00000555818	ENST00000379378		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-intron	ENST00000555818	ENST00000564718		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-3CDS	ENST00000358550	ENST00000379378		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-intron	ENST00000358550	ENST00000564718		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-3CDS	ENST00000537413	ENST00000379378		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-intron	ENST00000537413	ENST00000564718		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-3CDS	ENST00000554874	ENST00000379378		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-intron	ENST00000554874	ENST00000564718		ChiTaRS3.1			AW754491	SIPA1L1	chr14	72009085	-	E2F4	chr16	67229798	+
intron-3CDS	ENST00000339697	ENST00000339697		ChiTaRS3.1			BE178201	SERINC1	chr6	122766282	-	SERINC1	chr6	122779783	-
In-frame	ENST00000278407	ENST00000278407		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000340687		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000378323		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000378324		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000403558		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000278407	ENST00000531605		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000278407		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000340687		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000378323		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000378324		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000403558		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000340687	ENST00000531605		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000278407		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000340687		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000378323		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000378324		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000403558		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000378323	ENST00000531605		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000278407		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000340687		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000378323		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000378324		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000403558		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000378324	ENST00000531605		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000278407		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000340687		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000378323		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000378324		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000403558		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000403558	ENST00000531605		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000278407		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000340687		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000378323		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000378324		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000403558		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-intron	ENST00000531605	ENST00000531605		ChiTaRS3.1			AW964941	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-intron	ENST00000331272	ENST00000282272		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000337207		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000450567		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000328737		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000409153		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000539527		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000409919		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000331272	ENST00000477852		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000282272		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000337207		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000450567		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000328737		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000409153		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000539527		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000409919		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000470093	ENST00000477852		ChiTaRS3.1			AA640671	FBXW4	chr10	103411583	+	ANKRD44	chr2	197969512	+
intron-intron	ENST00000519416	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000519416	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000519416	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000519416	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000519416	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000519416	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000519416	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520615	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520615	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520615	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520615	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520615	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520615	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000443286	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000443286	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000443286	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000443286	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000443286	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000443286	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520340	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520340	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520340	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520340	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520340	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520340	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000518415	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000518415	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000518415	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000518415	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000518415	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000518415	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000522752	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000522752	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000522752	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000522752	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000522752	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000522752	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000348567	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000348567	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000348567	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000348567	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000348567	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000348567	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000330691	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000330691	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000330691	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000330691	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000330691	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000330691	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000317827	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000317827	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000317827	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000317827	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000317827	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000317827	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000379931	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000379931	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000379931	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000379931	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000379931	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000379931	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000276520	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000276520	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000276520	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000276520	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-3UTR	ENST00000276520	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
3UTR-intron	ENST00000276520	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520973	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520973	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520973	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520973	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520973	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520973	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000519416		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000520615		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000443286		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000520340		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000518415		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000522752		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520611	ENST00000348567		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520611	ENST00000330691		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520611	ENST00000317827		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520611	ENST00000379931		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-3UTR	ENST00000520611	ENST00000276520		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000520973		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000520611	ENST00000520611		ChiTaRS3.1			BI760021	TACC1	chr8	38708463	-	TACC1	chr8	38708602	+
intron-intron	ENST00000377044	ENST00000256495		ChiTaRS3.1			AA588011	TMEM2	chr9	74298459	+	BHLHE40	chr3	5022491	-
intron-intron	ENST00000377066	ENST00000256495		ChiTaRS3.1			AA588011	TMEM2	chr9	74298459	+	BHLHE40	chr3	5022491	-
intron-intron	ENST00000396272	ENST00000256495		ChiTaRS3.1			AA588011	TMEM2	chr9	74298459	+	BHLHE40	chr3	5022491	-
intron-3CDS	ENST00000396324	ENST00000336798		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000396324	ENST00000339394		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-5UTR	ENST00000396324	ENST00000471567		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000452625	ENST00000336798		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000452625	ENST00000339394		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-5UTR	ENST00000452625	ENST00000471567		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000576790	ENST00000336798		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000576790	ENST00000339394		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-5UTR	ENST00000576790	ENST00000471567		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000300036	ENST00000336798		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000300036	ENST00000339394		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-5UTR	ENST00000300036	ENST00000471567		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000573908	ENST00000336798		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-3CDS	ENST00000573908	ENST00000339394		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
intron-5UTR	ENST00000573908	ENST00000471567		ChiTaRS3.1			DB262991	MYH11	chr16	15931864	-	SDC3	chr1	31349869	-
Frame-shit	ENST00000248054	ENST00000248054		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000248054	ENST00000596802		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000248054	ENST00000379803		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000248054	ENST00000595541		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000248054	ENST00000594235		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-3CDS	ENST00000596802	ENST00000248054		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000596802	ENST00000596802		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000596802	ENST00000379803		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000596802	ENST00000595541		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000596802	ENST00000594235		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
Frame-shit	ENST00000379803	ENST00000248054		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000379803	ENST00000596802		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000379803	ENST00000379803		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000379803	ENST00000595541		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000379803	ENST00000594235		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
Frame-shit	ENST00000595541	ENST00000248054		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000595541	ENST00000596802		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000595541	ENST00000379803		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000595541	ENST00000595541		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
5CDS-intron	ENST00000595541	ENST00000594235		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-3CDS	ENST00000594235	ENST00000248054		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000594235	ENST00000596802		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000594235	ENST00000379803		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000594235	ENST00000595541		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000594235	ENST00000594235		ChiTaRS3.1			BQ308641	SIN3B	chr19	16980420	-	SIN3B	chr19	16980299	+
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			BQ360861	INS-IGF2	chr11	2150993	+	INS-IGF2	chr11	2151168	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			BQ360861	INS-IGF2	chr11	2150993	+	INS-IGF2	chr11	2151168	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			BQ360861	INS-IGF2	chr11	2150993	+	INS-IGF2	chr11	2151168	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			BQ360861	INS-IGF2	chr11	2150993	+	INS-IGF2	chr11	2151168	-
intron-3UTR	ENST00000314675	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000314675	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000314675	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000314675	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000374223	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374223	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374223	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374223	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000357089	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000357089	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000357089	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000357089	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000374221	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374221	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374221	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374221	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000374217	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374217	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374217	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374217	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000374222	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374222	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374222	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000374222	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000535108	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000535108	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000535108	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000535108	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-3UTR	ENST00000436301	ENST00000460006		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000436301	ENST00000379062		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000436301	ENST00000379070		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000436301	ENST00000535100		ChiTaRS3.1			CB052191	UBXN11	chr1	26608980	+	CDS2	chr20	5172338	-
intron-intron	ENST00000342992	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342992	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342992	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342992	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342992	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342992	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342992	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000460472	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000589042	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000342175	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000359218	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000591111	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000342992		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000460472		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000589042		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000342175		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000359218		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000591111		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000360870	ENST00000360870		ChiTaRS3.1			BF824891	TTN	chr2	179612128	-	TTN	chr2	179610700	+
intron-intron	ENST00000425019	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000425019	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000425019	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000425019	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000425019	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000425019	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000425019	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000425019	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000425019	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000324219	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000324219	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000324219	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000350198	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000350198	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350198	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000302217	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000302217	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000302217	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-3UTR	ENST00000413150	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-3UTR	ENST00000413150	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
3UTR-intron	ENST00000413150	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000347699	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000347699	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000347699	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000456652	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000456652	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000456652	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000350878	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000350878	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000350878	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000425019		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000324219		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000350198		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000302217		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000498066	ENST00000413150		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000347699		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000498066	ENST00000456652		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000350878		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-intron	ENST00000498066	ENST00000498066		ChiTaRS3.1			CN280691	MAP4K4	chr2	102509164	+	MAP4K4	chr2	102508384	+
intron-3CDS	ENST00000215832	ENST00000361545		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000215832	ENST00000223398		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000215832	ENST00000395060		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000398822	ENST00000361545		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000398822	ENST00000223398		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000398822	ENST00000395060		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000544786	ENST00000361545		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000544786	ENST00000223398		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000544786	ENST00000395060		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000491588	ENST00000361545		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000491588	ENST00000223398		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
intron-3CDS	ENST00000491588	ENST00000395060		ChiTaRS3.1			DA989331	MAPK1	chr22	22171458	+	CLIP2	chr7	73800849	+
3UTR-3UTR	ENST00000354989	ENST00000354989		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000354989	ENST00000360031		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000354989	ENST00000376652		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000354989	ENST00000433259		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000354989	ENST00000485936		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000360031	ENST00000354989		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000360031	ENST00000360031		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000360031	ENST00000376652		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000360031	ENST00000433259		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000360031	ENST00000485936		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000376652	ENST00000354989		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000376652	ENST00000360031		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000376652	ENST00000376652		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000376652	ENST00000433259		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000376652	ENST00000485936		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000433259	ENST00000354989		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000433259	ENST00000360031		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000433259	ENST00000376652		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000433259	ENST00000433259		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000433259	ENST00000485936		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000485936	ENST00000354989		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000485936	ENST00000360031		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000485936	ENST00000376652		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000485936	ENST00000433259		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000485936	ENST00000485936		ChiTaRS3.1			AA578001	ENTPD6	chr20	25207300	+	ENTPD6	chr20	25207166	-
3UTR-3UTR	ENST00000299505	ENST00000299505		ChiTaRS3.1			BU689631	KIAA0355	chr19	34846174	-	KIAA0355	chr19	34846038	+
3UTR-intron	ENST00000299505	ENST00000592124		ChiTaRS3.1			BU689631	KIAA0355	chr19	34846174	-	KIAA0355	chr19	34846038	+
intron-3UTR	ENST00000592124	ENST00000299505		ChiTaRS3.1			BU689631	KIAA0355	chr19	34846174	-	KIAA0355	chr19	34846038	+
intron-intron	ENST00000592124	ENST00000592124		ChiTaRS3.1			BU689631	KIAA0355	chr19	34846174	-	KIAA0355	chr19	34846038	+
intron-intron	ENST00000296506	ENST00000380027		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
intron-intron	ENST00000296506	ENST00000396855		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
intron-intron	ENST00000296506	ENST00000305836		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
intron-intron	ENST00000296506	ENST00000380034		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
intron-intron	ENST00000296506	ENST00000396847		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
intron-intron	ENST00000296506	ENST00000483835		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
intron-intron	ENST00000296506	ENST00000396853		ChiTaRS3.1			BQ007861	SCRG1	chr4	174320256	+	TRIM5	chr11	5719750	+
5CDS-intron	ENST00000347401	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000347401	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000347401	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000347401	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000353578	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000353578	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000353578	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000353578	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000295550	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000295550	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000295550	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000295550	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000472056	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000472056	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000472056	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000472056	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000409809	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000409809	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000409809	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000409809	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000346358	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000346358	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000346358	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
5CDS-intron	ENST00000346358	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392004	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392004	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392004	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392004	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392003	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392003	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392003	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000392003	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000473258	ENST00000368194		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000473258	ENST00000487682		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000473258	ENST00000361409		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000473258	ENST00000315174		ChiTaRS3.1			BE693421	COL6A3	chr2	238267677	-	ARHGEF11	chr1	157015181	-
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-3UTR	ENST00000548589	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-3UTR	ENST00000548589	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-3UTR	ENST00000548589	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-3UTR	ENST00000548589	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-3UTR	ENST00000548589	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-3UTR	ENST00000548589	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000552699	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000552699	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000552699	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000552699	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000552699	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000552699	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000267115	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000267115	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000267115	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000267115	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000267115	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000267115	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000549385	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000549385	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000549385	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000549385	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000549385	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000549385	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000423828	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000423828	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000423828	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000423828	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000423828	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000423828	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000395006	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000395006	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000395006	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000395006	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000395006	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000395006	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000547798	ENST00000552699		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000547798	ENST00000267115		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000547798	ENST00000549385		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000547798	ENST00000423828		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000547798	ENST00000395006		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
3UTR-3UTR	ENST00000547798	ENST00000547798		ChiTaRS3.1			AW361121	TMBIM6	chr12	50157812	+	TMBIM6	chr12	50157746	-
intron-intron	ENST00000369582	ENST00000361246		ChiTaRS3.1			R14891	CGA	chr6	87795326	+	CDC42BPB	chr14	103488300	+
intron-intron	ENST00000389221	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000389221	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000508903	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000508903	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397462	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397462	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000391893	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000391893	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000403703	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000403703	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000248104	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000248104	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397464	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397464	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000402641	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000402641	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000301712	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000301712	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000503648	ENST00000159647		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000503648	ENST00000395842		ChiTaRS3.1			CR747171	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
3UTR-intron	ENST00000320912	ENST00000361337		ChiTaRS3.1			BQ366641	MRFAP1	chr4	6643771	-	TOP1	chr20	39741875	-
intron-intron	ENST00000507420	ENST00000361337		ChiTaRS3.1			BQ366641	MRFAP1	chr4	6643771	-	TOP1	chr20	39741875	-
3UTR-intron	ENST00000382581	ENST00000361337		ChiTaRS3.1			BQ366641	MRFAP1	chr4	6643771	-	TOP1	chr20	39741875	-
intron-3UTR	ENST00000253778	ENST00000253778		ChiTaRS3.1			AW867731	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-intron	ENST00000253778	ENST00000520165		ChiTaRS3.1			AW867731	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-3UTR	ENST00000520165	ENST00000253778		ChiTaRS3.1			AW867731	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-intron	ENST00000520165	ENST00000520165		ChiTaRS3.1			AW867731	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-intron	ENST00000537442	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000537442	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000537442	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000537442	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000537442	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000382421	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000382421	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000382421	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000382421	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000382421	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545200	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545200	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545200	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545200	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545200	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000399466	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000399466	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000399466	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000399466	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000399466	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000322166	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000322166	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000322166	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000322166	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000322166	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000541778	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000541778	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000541778	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000541778	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000541778	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000542015	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000542015	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000542015	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000542015	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000542015	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545915	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545915	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545915	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545915	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000545915	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000540228	ENST00000344749		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000540228	ENST00000262965		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000540228	ENST00000453954		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000540228	ENST00000395423		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
intron-intron	ENST00000540228	ENST00000588136		ChiTaRS3.1			EU159435	NOP2	chr12	6668949	-	TCF3	chr19	1621522	-
3UTR-3UTR	ENST00000167106	ENST00000375990		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
3UTR-3UTR	ENST00000167106	ENST00000259253		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
3UTR-intron	ENST00000167106	ENST00000465836		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-3UTR	ENST00000554237	ENST00000375990		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-3UTR	ENST00000554237	ENST00000259253		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-intron	ENST00000554237	ENST00000465836		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-3UTR	ENST00000556038	ENST00000375990		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-3UTR	ENST00000556038	ENST00000259253		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-intron	ENST00000556038	ENST00000465836		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-3UTR	ENST00000554743	ENST00000375990		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-3UTR	ENST00000554743	ENST00000259253		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-intron	ENST00000554743	ENST00000465836		ChiTaRS3.1			BI041241	VASH1	chr14	77249194	-	UGGT1	chr2	128950162	+
intron-intron	ENST00000264151	ENST00000264151		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000264151	ENST00000519810		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000264151	ENST00000522700		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000519810	ENST00000264151		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000519810	ENST00000519810		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000519810	ENST00000522700		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000522700	ENST00000264151		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000522700	ENST00000519810		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000522700	ENST00000522700		ChiTaRS3.1			CR747071	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-3UTR	ENST00000368073	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000368073	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000368073	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368073	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368073	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368073	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368073	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000326837	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000326837	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000326837	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000326837	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000326837	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000326837	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000326837	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000368074	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000368074	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000368074	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368074	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368074	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368074	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000368074	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000608310	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000608310	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000608310	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000608310	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000608310	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000608310	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000608310	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000556710	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000556710	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000556710	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000556710	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000556710	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000556710	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000556710	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000610139	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000610139	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000610139	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000610139	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000610139	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000610139	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000610139	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000475733	ENST00000368073		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000475733	ENST00000326837		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-3UTR	ENST00000475733	ENST00000368074		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000475733	ENST00000608310		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000475733	ENST00000556710		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000475733	ENST00000610139		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000475733	ENST00000475733		ChiTaRS3.1			BG178531	DCAF8	chr1	160185740	+	DCAF8	chr1	160185696	-
intron-intron	ENST00000420696	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000420696	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000420696	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000420696	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000401534	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000401534	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000401534	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000401534	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000559240	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000559240	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000559240	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000559240	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000367897	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000367897	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000367897	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000367897	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000540236	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000540236	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000540236	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000540236	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000560641	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000560641	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000560641	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000560641	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000474046	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000474046	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000474046	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000474046	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000485769	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000485769	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000485769	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000485769	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000540246	ENST00000464615		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000540246	ENST00000265758		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000540246	ENST00000423166		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-3UTR	ENST00000540246	ENST00000423497		ChiTaRS3.1			T11661	PBX1	chr1	164725093	-	WBSCR22	chr7	73107704	+
intron-intron	ENST00000548589	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000548589	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000548589	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000548589	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000548589	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000548589	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000548589	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000552699	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000267115	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000549385	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000423828	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000395006	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000374168		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000374166		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000526792		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000374162		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000530003		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000531382		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
5CDS-intron	ENST00000547798	ENST00000488985		ChiTaRS3.1			DA446811	TMBIM6	chr12	50152178	+	RPS6KA1	chr1	26894691	+
intron-intron	ENST00000339382	ENST00000339382		ChiTaRS3.1			CN370241	PURG	chr8	30882332	+	PURG	chr8	30882304	-
intron-intron	ENST00000339382	ENST00000475541		ChiTaRS3.1			CN370241	PURG	chr8	30882332	+	PURG	chr8	30882304	-
intron-intron	ENST00000475541	ENST00000339382		ChiTaRS3.1			CN370241	PURG	chr8	30882332	+	PURG	chr8	30882304	-
intron-intron	ENST00000475541	ENST00000475541		ChiTaRS3.1			CN370241	PURG	chr8	30882332	+	PURG	chr8	30882304	-
intron-3UTR	ENST00000503771	ENST00000503771		ChiTaRS3.1			CN274951	TMEM158	chr3	45266369	+	TMEM158	chr3	45266314	-
intron-intron	ENST00000503278	ENST00000393469		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
intron-intron	ENST00000503278	ENST00000423114		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
intron-intron	ENST00000503278	ENST00000469902		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
intron-intron	ENST00000503278	ENST00000314584		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
intron-intron	ENST00000503278	ENST00000430155		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
intron-intron	ENST00000503278	ENST00000465475		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000425103	ENST00000393469		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000425103	ENST00000423114		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000425103	ENST00000469902		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000425103	ENST00000314584		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000425103	ENST00000430155		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000425103	ENST00000465475		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000307659	ENST00000393469		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000307659	ENST00000423114		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000307659	ENST00000469902		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000307659	ENST00000314584		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000307659	ENST00000430155		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000307659	ENST00000465475		ChiTaRS3.1			BF095281	KIAA0232	chr4	6884360	-	SLC12A8	chr3	124852206	+
3UTR-intron	ENST00000534336	ENST00000305264		ChiTaRS3.1			AF130111	MALAT1	chr11	65268585	-	HDAC3	chr5	141008217	-
3UTR-intron	ENST00000534336	ENST00000469207		ChiTaRS3.1			AF130111	MALAT1	chr11	65268585	-	HDAC3	chr5	141008217	-
3UTR-3CDS	ENST00000375442	ENST00000322723		ChiTaRS3.1			AW235151	TSPYL2	chrX	53117582	-	NCL	chr2	232320184	+
In-frame	ENST00000534358	ENST00000252674		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
5CDS-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
In-frame	ENST00000389506	ENST00000252674		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
5CDS-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
intron-3CDS	ENST00000354520	ENST00000252674		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
intron-3CDS	ENST00000420751	ENST00000252674		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AY187921	KMT2A	chr11	118355690	+	MLLT1	chr19	6270772	-
intron-3UTR	ENST00000366844	ENST00000366844		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000366844	ENST00000366843		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000366844	ENST00000284563		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000366844	ENST00000391874		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-3UTR	ENST00000366843	ENST00000366844		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000366843	ENST00000366843		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000366843	ENST00000284563		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000366843	ENST00000391874		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-3UTR	ENST00000284563	ENST00000366844		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000284563	ENST00000366843		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000284563	ENST00000284563		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000284563	ENST00000391874		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-3UTR	ENST00000391874	ENST00000366844		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000391874	ENST00000366843		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000391874	ENST00000284563		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
intron-intron	ENST00000391874	ENST00000391874		ChiTaRS3.1			BM874481	ENAH	chr1	225685223	+	ENAH	chr1	225681436	+
5CDS-intron	ENST00000298229	ENST00000517671		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000298229	ENST00000296930		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000298229	ENST00000351986		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000298229	ENST00000393820		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-intron	ENST00000541756	ENST00000517671		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000541756	ENST00000296930		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000541756	ENST00000351986		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000541756	ENST00000393820		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-intron	ENST00000538751	ENST00000517671		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000538751	ENST00000296930		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000538751	ENST00000351986		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
5CDS-5UTR	ENST00000538751	ENST00000393820		ChiTaRS3.1			BC071891	INPPL1	chr11	71948741	-	NPM1	chr5	170814870	+
intron-3CDS	ENST00000392225	ENST00000360416		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000392225	ENST00000379980		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000392225	ENST00000396239		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000392225	ENST00000269243		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000310123	ENST00000360416		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000310123	ENST00000379980		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000310123	ENST00000396239		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000310123	ENST00000269243		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000493050	ENST00000360416		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000493050	ENST00000379980		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000493050	ENST00000396239		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000493050	ENST00000269243		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000591633	ENST00000360416		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000591633	ENST00000379980		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000591633	ENST00000396239		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-3CDS	ENST00000591633	ENST00000269243		ChiTaRS3.1			BG954171	LGI4	chr19	35625768	-	MYH10	chr17	8409757	-
intron-intron	ENST00000366835	ENST00000427191		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000366835	ENST00000436978		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000366835	ENST00000502971		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000366835	ENST00000411767		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000366835	ENST00000316707		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000366835	ENST00000511467		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000474478	ENST00000427191		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000474478	ENST00000436978		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000474478	ENST00000502971		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000474478	ENST00000411767		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000474478	ENST00000316707		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000474478	ENST00000511467		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000537914	ENST00000427191		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000537914	ENST00000436978		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000537914	ENST00000502971		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000537914	ENST00000411767		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000537914	ENST00000316707		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
intron-intron	ENST00000537914	ENST00000511467		ChiTaRS3.1			AI338527	TMEM63A	chr1	226041060	-	PTPN13	chr4	87641667	-
Frame-shit	ENST00000353703	ENST00000353703		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
5CDS-3UTR	ENST00000353703	ENST00000479421		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
5CDS-3UTR	ENST00000353703	ENST00000372839		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
3UTR-3CDS	ENST00000479421	ENST00000353703		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
3UTR-3UTR	ENST00000479421	ENST00000479421		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
3UTR-3UTR	ENST00000479421	ENST00000372839		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
Frame-shit	ENST00000372839	ENST00000353703		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
5CDS-3UTR	ENST00000372839	ENST00000479421		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
5CDS-3UTR	ENST00000372839	ENST00000372839		ChiTaRS3.1			CB242961	YWHAB	chr20	43534674	-	YWHAB	chr20	43533671	+
intron-intron	ENST00000606532	ENST00000389484		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000606532	ENST00000486364		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000456190	ENST00000389484		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000456190	ENST00000486364		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000607275	ENST00000389484		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000607275	ENST00000486364		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000456616	ENST00000389484		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-intron	ENST00000456616	ENST00000486364		ChiTaRS3.1			BE065041	ELOVL2-AS1	chr6	11066324	-	LRP1B	chr2	142171176	-
intron-3UTR	ENST00000398992	ENST00000534336		ChiTaRS3.1			BF885211	OOSP1	chr11	59720511	-	MALAT1	chr11	65269577	+
intron-intron	ENST00000390168	ENST00000388999		ChiTaRS3.1			AF118081	H19	chr11	2019035	+	WDR62	chr19	36561143	+
intron-intron	ENST00000390168	ENST00000401500		ChiTaRS3.1			AF118081	H19	chr11	2019035	+	WDR62	chr19	36561143	+
intron-intron	ENST00000390168	ENST00000270301		ChiTaRS3.1			AF118081	H19	chr11	2019035	+	WDR62	chr19	36561143	+
intron-intron	ENST00000390168	ENST00000378860		ChiTaRS3.1			AF118081	H19	chr11	2019035	+	WDR62	chr19	36561143	+
intron-intron	ENST00000476233	ENST00000202028		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000476233	ENST00000373950		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000476233	ENST00000441639		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000476233	ENST00000373946		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000476233	ENST00000338074		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000476233	ENST00000373941		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000476233	ENST00000479336		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000202028		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000373950		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000441639		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000373946		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000338074		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000373941		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000354667	ENST00000479336		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000202028		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000373950		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000441639		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000373946		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000338074		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000373941		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000356674	ENST00000479336		ChiTaRS3.1			AW853161	HNRNPA2B1	chr7	26236507	-	EPB41L1	chr20	34701926	+
intron-intron	ENST00000403799	ENST00000359204		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000403799	ENST00000460752		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000403799	ENST00000536233		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000403799	ENST00000371430		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000403799	ENST00000394100		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000395796	ENST00000359204		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000395796	ENST00000460752		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000395796	ENST00000536233		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000395796	ENST00000371430		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000395796	ENST00000394100		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000345378	ENST00000359204		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000345378	ENST00000460752		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000345378	ENST00000536233		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000345378	ENST00000371430		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000345378	ENST00000394100		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000437084	ENST00000359204		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000437084	ENST00000460752		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000437084	ENST00000536233		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000437084	ENST00000371430		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000437084	ENST00000394100		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000476008	ENST00000359204		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000476008	ENST00000460752		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000476008	ENST00000536233		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000476008	ENST00000371430		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-intron	ENST00000476008	ENST00000394100		ChiTaRS3.1			BF885201	GCK	chr7	44184218	+	FRA10AC1	chr10	95450597	+
intron-3CDS	ENST00000264012	ENST00000504926		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000264012	ENST00000306315		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-intron	ENST00000264012	ENST00000513985		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000429102	ENST00000504926		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000429102	ENST00000306315		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-intron	ENST00000429102	ENST00000513985		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000581171	ENST00000504926		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000581171	ENST00000306315		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-intron	ENST00000581171	ENST00000513985		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000569117	ENST00000504926		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-3CDS	ENST00000569117	ENST00000306315		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
intron-intron	ENST00000569117	ENST00000513985		ChiTaRS3.1			BF354821	CDH3	chr16	68686823	-	ZNF608	chr5	123982907	+
5CDS-3UTR	ENST00000367816	ENST00000367816		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367816	ENST00000367815		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367816	ENST00000499679		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367816	ENST00000367813		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367815	ENST00000367816		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367815	ENST00000367815		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367815	ENST00000499679		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367815	ENST00000367813		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000499679	ENST00000367816		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000499679	ENST00000367815		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000499679	ENST00000499679		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000499679	ENST00000367813		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367813	ENST00000367816		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367813	ENST00000367815		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367813	ENST00000499679		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
5CDS-3UTR	ENST00000367813	ENST00000367813		ChiTaRS3.1			BE163191	ATP1B1	chr1	169100618	-	ATP1B1	chr1	169100819	+
Frame-shit	ENST00000359062	ENST00000273038		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
Frame-shit	ENST00000359062	ENST00000430365		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
Frame-shit	ENST00000359062	ENST00000404339		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
5CDS-intron	ENST00000359062	ENST00000480288		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
5CDS-intron	ENST00000359062	ENST00000413604		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
5CDS-intron	ENST00000359062	ENST00000451674		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
5CDS-intron	ENST00000359062	ENST00000424529		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-3CDS	ENST00000544307	ENST00000273038		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-3CDS	ENST00000544307	ENST00000430365		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-3CDS	ENST00000544307	ENST00000404339		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-intron	ENST00000544307	ENST00000480288		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-intron	ENST00000544307	ENST00000413604		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-intron	ENST00000544307	ENST00000451674		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
intron-intron	ENST00000544307	ENST00000424529		ChiTaRS3.1			DA711191	PDE3A	chr12	20709645	+	VGLL4	chr3	11606496	-
In-frame	ENST00000399804	ENST00000399804		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000399804	ENST00000286835		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000399804	ENST00000434667		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000286835	ENST00000399804		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000286835	ENST00000286835		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000286835	ENST00000434667		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000434667	ENST00000399804		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000434667	ENST00000286835		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
In-frame	ENST00000434667	ENST00000434667		ChiTaRS3.1			BQ307991	SCAF4	chr21	33067125	-	SCAF4	chr21	33067231	+
Frame-shit	ENST00000294785	ENST00000294785		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000294785	ENST00000368063		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000294785	ENST00000535857		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000294785	ENST00000392212		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000294785	ENST00000459963		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000294785	ENST00000368065		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368063	ENST00000294785		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368063	ENST00000368063		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368063	ENST00000535857		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368063	ENST00000392212		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000368063	ENST00000459963		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000368063	ENST00000368065		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000535857	ENST00000294785		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000535857	ENST00000368063		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000535857	ENST00000535857		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000535857	ENST00000392212		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000535857	ENST00000459963		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000535857	ENST00000368065		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000392212	ENST00000294785		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000392212	ENST00000368063		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000392212	ENST00000535857		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000392212	ENST00000392212		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000392212	ENST00000459963		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000392212	ENST00000368065		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
3UTR-3CDS	ENST00000459963	ENST00000294785		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
3UTR-3CDS	ENST00000459963	ENST00000368063		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
3UTR-3CDS	ENST00000459963	ENST00000535857		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
3UTR-3CDS	ENST00000459963	ENST00000392212		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
3UTR-intron	ENST00000459963	ENST00000459963		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
3UTR-intron	ENST00000459963	ENST00000368065		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368065	ENST00000294785		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368065	ENST00000368063		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368065	ENST00000535857		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000368065	ENST00000392212		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000368065	ENST00000459963		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
5CDS-intron	ENST00000368065	ENST00000368065		ChiTaRS3.1			BF849781	NCSTN	chr1	160322976	+	NCSTN	chr1	160326531	-
Frame-shit	ENST00000413916	ENST00000261700		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000413916	ENST00000556760		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000309315	ENST00000261700		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000309315	ENST00000556760		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000441627	ENST00000261700		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000441627	ENST00000556760		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000433667	ENST00000261700		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000433667	ENST00000556760		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000265346	ENST00000261700		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000265346	ENST00000556760		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000463931	ENST00000261700		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000463931	ENST00000556760		ChiTaRS3.1			BI059831	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-5UTR	ENST00000536534	ENST00000222553		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000536534	ENST00000354289		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000536534	ENST00000484527		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-5UTR	ENST00000427495	ENST00000222553		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000427495	ENST00000354289		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000427495	ENST00000484527		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-5UTR	ENST00000442594	ENST00000222553		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000442594	ENST00000354289		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000442594	ENST00000484527		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-5UTR	ENST00000474177	ENST00000222553		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000474177	ENST00000354289		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
intron-intron	ENST00000474177	ENST00000484527		ChiTaRS3.1			BQ335321	PLD5	chr1	242370111	-	NAMPT	chr7	105925393	-
5CDS-intron	ENST00000466490	ENST00000509176		ChiTaRS3.1			BU603871	SRPRB	chr3	133538550	+	CCSER1	chr4	91759819	-
5CDS-intron	ENST00000466490	ENST00000333691		ChiTaRS3.1			BU603871	SRPRB	chr3	133538550	+	CCSER1	chr4	91759819	-
5CDS-intron	ENST00000466490	ENST00000432775		ChiTaRS3.1			BU603871	SRPRB	chr3	133538550	+	CCSER1	chr4	91759819	-
5CDS-intron	ENST00000466490	ENST00000504150		ChiTaRS3.1			BU603871	SRPRB	chr3	133538550	+	CCSER1	chr4	91759819	-
intron-intron	ENST00000497547	ENST00000497547		ChiTaRS3.1			AA421801	RRP1	chr21	45222525	+	RRP1	chr21	45213293	+
intron-intron	ENST00000497547	ENST00000471909		ChiTaRS3.1			AA421801	RRP1	chr21	45222525	+	RRP1	chr21	45213293	+
intron-intron	ENST00000471909	ENST00000497547		ChiTaRS3.1			AA421801	RRP1	chr21	45222525	+	RRP1	chr21	45213293	+
intron-intron	ENST00000471909	ENST00000471909		ChiTaRS3.1			AA421801	RRP1	chr21	45222525	+	RRP1	chr21	45213293	+
intron-3CDS	ENST00000598441	ENST00000216271		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-3CDS	ENST00000598441	ENST00000448072		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-5UTR	ENST00000598441	ENST00000498366		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-5UTR	ENST00000598441	ENST00000349505		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-3CDS	ENST00000221448	ENST00000216271		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-3CDS	ENST00000221448	ENST00000448072		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-5UTR	ENST00000221448	ENST00000498366		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-5UTR	ENST00000221448	ENST00000349505		ChiTaRS3.1			AA425581	SNRNP70	chr19	49610611	+	HDAC10	chr22	50684407	-
intron-3CDS	ENST00000261574	ENST00000261574		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000261574	ENST00000490680		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000261574	ENST00000539640		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000261574	ENST00000493492		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-3CDS	ENST00000490680	ENST00000261574		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-3CDS	ENST00000490680	ENST00000490680		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-3CDS	ENST00000490680	ENST00000539640		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-intron	ENST00000490680	ENST00000493492		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000539640	ENST00000261574		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000539640	ENST00000490680		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000539640	ENST00000539640		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000539640	ENST00000493492		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000493492	ENST00000261574		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000493492	ENST00000490680		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000493492	ENST00000539640		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000493492	ENST00000493492		ChiTaRS3.1			BF435791	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000252577	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000252577	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000252577	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000252577	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000252577	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000252577	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000252577	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000360315	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000537887	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000404158	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000358713	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000429563	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000252577		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000360315		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000537887		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000404158		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000358713		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000429563		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
intron-intron	ENST00000473184	ENST00000473184		ChiTaRS3.1			AA601301	GATAD2A	chr19	19609076	-	GATAD2A	chr19	19598919	+
3UTR-intron	ENST00000272252	ENST00000346348		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000272252	ENST00000314673		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000272252	ENST00000513865		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000272252	ENST00000505648		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000272252	ENST00000508980		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000272252	ENST00000369627		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000410063	ENST00000346348		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000410063	ENST00000314673		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000410063	ENST00000513865		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000410063	ENST00000505648		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000410063	ENST00000508980		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
3UTR-intron	ENST00000410063	ENST00000369627		ChiTaRS3.1			BX107111	GALM	chr2	38961013	+	SNX14	chr6	86216319	+
Frame-shit	ENST00000327827	ENST00000327827		ChiTaRS3.1			BE082041	C16orf72	chr16	9210690	+	C16orf72	chr16	9197090	+
intron-intron	ENST00000252577	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000252577	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000252577	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000252577	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000252577	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000252577	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000252577	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000360315	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000537887	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000404158	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000358713	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000429563	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000252577		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000360315		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000537887		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000404158		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000358713		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000429563		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
intron-intron	ENST00000473184	ENST00000473184		ChiTaRS3.1			CV312441	GATAD2A	chr19	19579223	+	GATAD2A	chr19	19578751	-
3UTR-3UTR	ENST00000542191	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000542191	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000542191	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000542191	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000542191	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000542191	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000542191	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000542191	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000542191	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261368	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000261368	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000261368	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379538	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000379538	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000379538	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379533	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000379533	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000379533	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000379536	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000379536	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000379536	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000261367	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000261367	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000261367	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-3UTR	ENST00000414317	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000414317	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
3UTR-intron	ENST00000414317	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000503116	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-intron	ENST00000503116	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-intron	ENST00000503116	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000542191		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000261368		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000379538		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000379533		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000379536		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000261367		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-3UTR	ENST00000504884	ENST00000414317		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-intron	ENST00000504884	ENST00000503116		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
intron-intron	ENST00000504884	ENST00000504884		ChiTaRS3.1			N71201	SNCAIP	chr5	121799322	-	SNCAIP	chr5	121799381	+
5CDS-5UTR	ENST00000303961	ENST00000265277		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000303961	ENST00000369452		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000303961	ENST00000489390		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000406058	ENST00000265277		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000406058	ENST00000369452		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000406058	ENST00000489390		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000593726	ENST00000265277		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000593726	ENST00000369452		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
5CDS-5UTR	ENST00000593726	ENST00000489390		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
intron-5UTR	ENST00000594140	ENST00000265277		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
intron-5UTR	ENST00000594140	ENST00000369452		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
intron-5UTR	ENST00000594140	ENST00000489390		ChiTaRS3.1			BU537611	EGLN2	chr19	41306897	+	SHOC2	chr10	112679360	+
intron-3CDS	ENST00000357214	ENST00000556440		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-3CDS	ENST00000357214	ENST00000553412		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-intron	ENST00000357214	ENST00000581056		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-3UTR	ENST00000357214	ENST00000577476		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-3CDS	ENST00000468598	ENST00000556440		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-3CDS	ENST00000468598	ENST00000553412		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-intron	ENST00000468598	ENST00000581056		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
intron-3UTR	ENST00000468598	ENST00000577476		ChiTaRS3.1			DA570611	SFPQ	chr1	35651224	-	CEP95	chr17	62525506	+
3UTR-3UTR	ENST00000604411	ENST00000604411		ChiTaRS3.1			BF081541	TSIX	chrX	73046332	+	TSIX	chrX	73046121	-
intron-intron	ENST00000182096	ENST00000485162		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000182096	ENST00000463408		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000182096	ENST00000470449		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000485253	ENST00000485162		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000485253	ENST00000463408		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000485253	ENST00000470449		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
5CDS-intron	ENST00000419587	ENST00000485162		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
5CDS-intron	ENST00000419587	ENST00000463408		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
5CDS-intron	ENST00000419587	ENST00000470449		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000389622	ENST00000485162		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000389622	ENST00000463408		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
intron-intron	ENST00000389622	ENST00000470449		ChiTaRS3.1			AK130921	CRYBG3	chr3	97593937	+	MYLK-AS1	chr3	123339361	-
3UTR-intron	ENST00000265881	ENST00000379061		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000265881	ENST00000457710		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000379061		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000457710		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000379061		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000457710		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000379061		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000457710		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000379061		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000457710		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000379061		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000457710		ChiTaRS3.1			AW972641	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000285238	ENST00000285238		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
3UTR-intron	ENST00000285238	ENST00000515707		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
3UTR-intron	ENST00000285238	ENST00000427699		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
3UTR-intron	ENST00000285238	ENST00000510891		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000515707	ENST00000285238		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000515707	ENST00000515707		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000515707	ENST00000427699		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000515707	ENST00000510891		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000427699	ENST00000285238		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000427699	ENST00000515707		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000427699	ENST00000427699		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000427699	ENST00000510891		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000510891	ENST00000285238		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000510891	ENST00000515707		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000510891	ENST00000427699		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000510891	ENST00000510891		ChiTaRS3.1			AK000791	ABCC3	chr17	48769460	+	ABCC3	chr17	48765523	+
intron-intron	ENST00000368073	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000368073	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000368073	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000326837	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000326837	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000326837	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000368074	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000368074	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000368074	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000608310	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000608310	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000608310	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000556710	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000556710	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000556710	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000610139	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000610139	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000610139	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000475733	ENST00000472709		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000475733	ENST00000367114		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
intron-intron	ENST00000475733	ENST00000271764		ChiTaRS3.1			AI299201	DCAF8	chr1	160248798	+	EIF2D	chr1	206772898	-
5CDS-3UTR	ENST00000356805	ENST00000373019		ChiTaRS3.1			BG291041	SPTBN1	chr2	54896812	+	SF3A3	chr1	38423199	-
5CDS-intron	ENST00000356805	ENST00000448721		ChiTaRS3.1			BG291041	SPTBN1	chr2	54896812	+	SF3A3	chr1	38423199	-
5CDS-intron	ENST00000356805	ENST00000489537		ChiTaRS3.1			BG291041	SPTBN1	chr2	54896812	+	SF3A3	chr1	38423199	-
intron-3UTR	ENST00000333896	ENST00000373019		ChiTaRS3.1			BG291041	SPTBN1	chr2	54896812	+	SF3A3	chr1	38423199	-
intron-intron	ENST00000333896	ENST00000448721		ChiTaRS3.1			BG291041	SPTBN1	chr2	54896812	+	SF3A3	chr1	38423199	-
intron-intron	ENST00000333896	ENST00000489537		ChiTaRS3.1			BG291041	SPTBN1	chr2	54896812	+	SF3A3	chr1	38423199	-
intron-intron	ENST00000366978	ENST00000366978		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366978	ENST00000366977		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366978	ENST00000422588		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366978	ENST00000366975		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366978	ENST00000366976		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366978	ENST00000473995		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366977	ENST00000366978		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366977	ENST00000366977		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366977	ENST00000422588		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366977	ENST00000366975		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366977	ENST00000366976		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366977	ENST00000473995		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000422588	ENST00000366978		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000422588	ENST00000366977		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000422588	ENST00000422588		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000422588	ENST00000366975		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000422588	ENST00000366976		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000422588	ENST00000473995		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366975	ENST00000366978		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366975	ENST00000366977		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366975	ENST00000422588		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366975	ENST00000366975		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366975	ENST00000366976		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366975	ENST00000473995		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366976	ENST00000366978		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366976	ENST00000366977		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366976	ENST00000422588		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366976	ENST00000366975		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366976	ENST00000366976		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000366976	ENST00000473995		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000473995	ENST00000366978		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000473995	ENST00000366977		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000473995	ENST00000422588		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000473995	ENST00000366975		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000473995	ENST00000366976		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-intron	ENST00000473995	ENST00000473995		ChiTaRS3.1			DW467681	NSL1	chr1	212916271	-	NSL1	chr1	212916980	-
intron-3UTR	ENST00000403729	ENST00000381086		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000403729	ENST00000275521		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000403729	ENST00000381083		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000403729	ENST00000465642		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000482406	ENST00000381086		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000482406	ENST00000275521		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000482406	ENST00000381083		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000482406	ENST00000465642		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000404191	ENST00000381086		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000404191	ENST00000275521		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000404191	ENST00000381083		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000404191	ENST00000465642		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000346652	ENST00000381086		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000346652	ENST00000275521		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000346652	ENST00000381083		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000346652	ENST00000465642		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000307333	ENST00000381086		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000307333	ENST00000275521		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000307333	ENST00000381083		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000307333	ENST00000465642		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000295465	ENST00000381086		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000295465	ENST00000275521		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000295465	ENST00000381083		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000295465	ENST00000465642		ChiTaRS3.1			AK091721	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3CDS	ENST00000338586	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000338586	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000338586	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000338515	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000338515	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000338515	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000367171	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367171	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367171	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000367169	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367169	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367169	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000539706	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000539706	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000539706	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000339876	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000339876	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000339876	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000367170	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367170	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367170	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000360049	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000360049	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000360049	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000367172	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367172	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000367172	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000403080	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000403080	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000403080	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000404076	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000404076	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000404076	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000401399	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000401399	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000401399	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000404907	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000404907	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000404907	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000513543	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000513543	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000513543	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-3CDS	ENST00000495396	ENST00000313143		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000495396	ENST00000431765		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000495396	ENST00000462665		ChiTaRS3.1			U75651	NFASC	chr1	204978922	+	DVL3	chr3	183873176	+
intron-intron	ENST00000255890	ENST00000416379		ChiTaRS3.1			CN422271	ZDHHC8P1	chr22	23733106	-	TMEM130	chr7	98594696	-
intron-intron	ENST00000255890	ENST00000339375		ChiTaRS3.1			CN422271	ZDHHC8P1	chr22	23733106	-	TMEM130	chr7	98594696	-
intron-intron	ENST00000255890	ENST00000450876		ChiTaRS3.1			CN422271	ZDHHC8P1	chr22	23733106	-	TMEM130	chr7	98594696	-
intron-intron	ENST00000255890	ENST00000474857		ChiTaRS3.1			CN422271	ZDHHC8P1	chr22	23733106	-	TMEM130	chr7	98594696	-
intron-intron	ENST00000255890	ENST00000345589		ChiTaRS3.1			CN422271	ZDHHC8P1	chr22	23733106	-	TMEM130	chr7	98594696	-
intron-intron	ENST00000255890	ENST00000546258		ChiTaRS3.1			CN422271	ZDHHC8P1	chr22	23733106	-	TMEM130	chr7	98594696	-
intron-3CDS	ENST00000254958	ENST00000254958		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-3CDS	ENST00000254958	ENST00000423891		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-intron	ENST00000254958	ENST00000488480		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-3CDS	ENST00000423891	ENST00000254958		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-3CDS	ENST00000423891	ENST00000423891		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-intron	ENST00000423891	ENST00000488480		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-3CDS	ENST00000488480	ENST00000254958		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-3CDS	ENST00000488480	ENST00000423891		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-intron	ENST00000488480	ENST00000488480		ChiTaRS3.1			AW361171	JAG1	chr20	10619845	-	JAG1	chr20	10620451	+
intron-intron	ENST00000311507	ENST00000303538		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000311507	ENST00000503396		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000411416	ENST00000303538		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000411416	ENST00000503396		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000515389	ENST00000303538		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000515389	ENST00000503396		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000509973	ENST00000303538		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000509973	ENST00000503396		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000505406	ENST00000303538		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000505406	ENST00000503396		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000426923	ENST00000303538		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000426923	ENST00000503396		ChiTaRS3.1			T93881	PLAC8	chr4	84011408	+	PDS5A	chr4	39971781	+
intron-intron	ENST00000607772	ENST00000367689		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000357444		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000251507		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000325589		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000367686		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000367687		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000347255		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000489615		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000478442		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000486220		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000392064		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000607772	ENST00000367688		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000367689		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000357444		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000251507		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000325589		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000367686		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000367687		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000347255		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000489615		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000478442		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000486220		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000392064		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000479339	ENST00000367688		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000367689		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000357444		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000251507		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000325589		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000367686		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000367687		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000347255		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000489615		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000478442		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000486220		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000392064		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000433165	ENST00000367688		ChiTaRS3.1			BF358231	CNKSR3	chr6	154799764	+	RABGAP1L	chr1	174507377	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582411	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
5CDS-intron	ENST00000376929	ENST00000367689		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000357444		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000251507		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000325589		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000367686		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000367687		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000347255		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000489615		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000478442		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000486220		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000392064		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000376929	ENST00000367688		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000367689		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000357444		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000251507		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000325589		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000367686		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000367687		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000347255		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000489615		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000478442		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000486220		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000392064		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
intron-intron	ENST00000506690	ENST00000367688		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000367689		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000357444		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000251507		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000325589		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000367686		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000367687		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000347255		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000489615		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000478442		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000486220		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000392064		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000389805	ENST00000367688		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000367689		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000357444		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000251507		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000325589		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000367686		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000367687		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000347255		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000489615		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000478442		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000486220		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000392064		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000402874	ENST00000367688		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000367689		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000357444		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000251507		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000325589		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000367686		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000367687		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000347255		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000489615		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000478442		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000486220		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000392064		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000510187	ENST00000367688		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000367689		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000357444		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000251507		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000325589		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000367686		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000367687		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000347255		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000489615		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000478442		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000486220		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000392064		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
5CDS-intron	ENST00000360718	ENST00000367688		ChiTaRS3.1			BE277531	SQSTM1	chr5	179250053	+	RABGAP1L	chr1	174834521	+
In-frame	ENST00000335221	ENST00000335221		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000335221	ENST00000321892		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000335221	ENST00000306378		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000335221	ENST00000424123		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
5CDS-intron	ENST00000335221	ENST00000577770		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000321892	ENST00000335221		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000321892	ENST00000321892		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000321892	ENST00000306378		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000321892	ENST00000424123		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
5CDS-intron	ENST00000321892	ENST00000577770		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000306378	ENST00000335221		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000306378	ENST00000321892		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000306378	ENST00000306378		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000306378	ENST00000424123		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
5CDS-intron	ENST00000306378	ENST00000577770		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000424123	ENST00000335221		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000424123	ENST00000321892		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000424123	ENST00000306378		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
In-frame	ENST00000424123	ENST00000424123		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
5CDS-intron	ENST00000424123	ENST00000577770		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
intron-3CDS	ENST00000577770	ENST00000335221		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
intron-3CDS	ENST00000577770	ENST00000321892		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
intron-3CDS	ENST00000577770	ENST00000306378		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
intron-3CDS	ENST00000577770	ENST00000424123		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
intron-intron	ENST00000577770	ENST00000577770		ChiTaRS3.1			BF988361	BPTF	chr17	65862663	+	BPTF	chr17	65871020	-
3UTR-3UTR	ENST00000532485	ENST00000532485		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000532485	ENST00000530182		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000532485	ENST00000526597		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000532485	ENST00000533873		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000532485	ENST00000538157		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000532485	ENST00000544113		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
intron-3UTR	ENST00000530182	ENST00000532485		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
intron-intron	ENST00000530182	ENST00000530182		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
intron-3UTR	ENST00000530182	ENST00000526597		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
intron-intron	ENST00000530182	ENST00000533873		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
intron-3UTR	ENST00000530182	ENST00000538157		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
intron-3UTR	ENST00000530182	ENST00000544113		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000526597	ENST00000532485		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000526597	ENST00000530182		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000526597	ENST00000526597		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000526597	ENST00000533873		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000526597	ENST00000538157		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000526597	ENST00000544113		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000533873	ENST00000532485		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000533873	ENST00000530182		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000533873	ENST00000526597		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000533873	ENST00000533873		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000533873	ENST00000538157		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000533873	ENST00000544113		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000538157	ENST00000532485		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000538157	ENST00000530182		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000538157	ENST00000526597		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000538157	ENST00000533873		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000538157	ENST00000538157		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000538157	ENST00000544113		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000544113	ENST00000532485		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000544113	ENST00000530182		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000544113	ENST00000526597		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-intron	ENST00000544113	ENST00000533873		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000544113	ENST00000538157		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000544113	ENST00000544113		ChiTaRS3.1			AA113041	ACER3	chr11	76731441	-	ACER3	chr11	76731706	+
3UTR-3UTR	ENST00000527001	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
3UTR-3UTR	ENST00000527001	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
5UTR-3UTR	ENST00000257831	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000450654	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000530286	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000533754	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531728	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000531794	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000527001		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000257831		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000450654		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000530286		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000533754		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000531728		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000531794		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
intron-3UTR	ENST00000527935	ENST00000527935		ChiTaRS3.1			BE005401	EHF	chr11	34642681	-	EHF	chr11	34668085	+
In-frame	ENST00000435505	ENST00000403295		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
In-frame	ENST00000435505	ENST00000402135		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
In-frame	ENST00000435505	ENST00000233741		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
In-frame	ENST00000435505	ENST00000403676		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
5CDS-3UTR	ENST00000435505	ENST00000540646		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
5CDS-intron	ENST00000435505	ENST00000481670		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000417641	ENST00000403295		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000417641	ENST00000402135		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000417641	ENST00000233741		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000417641	ENST00000403676		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3UTR	ENST00000417641	ENST00000540646		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-intron	ENST00000417641	ENST00000481670		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-3CDS	ENST00000478687	ENST00000403295		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-3CDS	ENST00000478687	ENST00000402135		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-3CDS	ENST00000478687	ENST00000233741		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-3CDS	ENST00000478687	ENST00000403676		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-3UTR	ENST00000478687	ENST00000540646		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-intron	ENST00000478687	ENST00000481670		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000412104	ENST00000403295		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000412104	ENST00000402135		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000412104	ENST00000233741		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3CDS	ENST00000412104	ENST00000403676		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-3UTR	ENST00000412104	ENST00000540646		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
3UTR-intron	ENST00000412104	ENST00000481670		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000340157	ENST00000403295		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000340157	ENST00000402135		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000340157	ENST00000233741		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000340157	ENST00000403676		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
5CDS-3UTR	ENST00000340157	ENST00000540646		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
5CDS-intron	ENST00000340157	ENST00000481670		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000440705	ENST00000403295		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000440705	ENST00000402135		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000440705	ENST00000233741		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
Frame-shit	ENST00000440705	ENST00000403676		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
5CDS-3UTR	ENST00000440705	ENST00000540646		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
5CDS-intron	ENST00000440705	ENST00000481670		ChiTaRS3.1			CN421381	VRK2	chr2	58386502	+	FANCL	chr2	58392925	-
intron-3CDS	ENST00000257915	ENST00000257915		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000257915	ENST00000307660		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000257915	ENST00000549867		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000257915	ENST00000548115		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000307660	ENST00000257915		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000307660	ENST00000307660		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000307660	ENST00000549867		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000307660	ENST00000548115		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000549867	ENST00000257915		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000549867	ENST00000307660		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000549867	ENST00000549867		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000549867	ENST00000548115		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000548115	ENST00000257915		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000548115	ENST00000307660		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000548115	ENST00000549867		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
intron-3CDS	ENST00000548115	ENST00000548115		ChiTaRS3.1			AA485991	TFCP2	chr12	51566181	+	TFCP2	chr12	51566123	-
3UTR-intron	ENST00000269856	ENST00000449307		ChiTaRS3.1			BE744731	FEM1A	chr19	4794696	-	GS1-124K5.11	chr7	66057359	-
intron-intron	ENST00000375859	ENST00000327827		ChiTaRS3.1			BM678681	SPIN1	chr9	91021476	-	C16orf72	chr16	9204606	-
intron-intron	ENST00000541629	ENST00000327827		ChiTaRS3.1			BM678681	SPIN1	chr9	91021476	-	C16orf72	chr16	9204606	-
intron-intron	ENST00000469017	ENST00000327827		ChiTaRS3.1			BM678681	SPIN1	chr9	91021476	-	C16orf72	chr16	9204606	-
3UTR-3UTR	ENST00000534358	ENST00000534358		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-intron	ENST00000534358	ENST00000389506		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-3UTR	ENST00000534358	ENST00000354520		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-3UTR	ENST00000389506	ENST00000534358		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-intron	ENST00000389506	ENST00000389506		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-3UTR	ENST00000389506	ENST00000354520		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-3UTR	ENST00000354520	ENST00000534358		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-intron	ENST00000354520	ENST00000389506		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-3UTR	ENST00000354520	ENST00000354520		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
3UTR-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
intron-3UTR	ENST00000420751	ENST00000534358		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
intron-intron	ENST00000420751	ENST00000389506		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
intron-3UTR	ENST00000420751	ENST00000354520		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			BQ423051	KMT2A	chr11	118394603	-	KMT2A	chr11	118395263	+
intron-3UTR	ENST00000392882	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000392882	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000392882	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000392882	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000392882	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000392882	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000392882	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000358655	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000358655	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000358655	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000358655	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000358655	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000358655	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000358655	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000355338	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000355338	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000355338	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000355338	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000355338	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000355338	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000355338	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000344102	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000344102	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000344102	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000344102	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000344102	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000344102	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000344102	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000557135	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000557135	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000557135	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000557135	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000557135	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000557135	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000557135	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000556645	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000556645	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000556645	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000556645	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000556645	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000556645	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000556645	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000554084	ENST00000392882		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000554084	ENST00000358655		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000554084	ENST00000355338		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000554084	ENST00000344102		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000554084	ENST00000557135		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-3UTR	ENST00000554084	ENST00000556645		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-intron	ENST00000554084	ENST00000554084		ChiTaRS3.1			T63251	WARS	chr14	100801169	-	WARS	chr14	100801062	+
intron-5UTR	ENST00000498485	ENST00000498485		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000498485	ENST00000259457		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000498485	ENST00000536392		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000259457	ENST00000498485		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000259457	ENST00000259457		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000259457	ENST00000536392		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000536392	ENST00000498485		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000536392	ENST00000259457		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
intron-5UTR	ENST00000536392	ENST00000536392		ChiTaRS3.1			W23061	PSMB7	chr9	127177711	+	PSMB7	chr9	127174681	-
In-frame	ENST00000244230	ENST00000244230		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
In-frame	ENST00000244230	ENST00000498451		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
5CDS-intron	ENST00000244230	ENST00000468427		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-3CDS	ENST00000498451	ENST00000244230		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-3CDS	ENST00000498451	ENST00000498451		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-intron	ENST00000498451	ENST00000468427		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-3CDS	ENST00000468427	ENST00000244230		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-3CDS	ENST00000468427	ENST00000498451		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-intron	ENST00000468427	ENST00000468427		ChiTaRS3.1			BU686351	MPHOSPH10	chr2	71376531	-	MPHOSPH10	chr2	71361183	+
intron-3UTR	ENST00000306100	ENST00000427410		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000306100	ENST00000447388		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000306100	ENST00000425457		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000306100	ENST00000456393		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000306100	ENST00000372654		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000306100	ENST00000372653		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000306100	ENST00000372652		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000306100	ENST00000372651		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000306100	ENST00000440226		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000306100	ENST00000308733		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000306100	ENST00000483091		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000379164	ENST00000427410		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000379164	ENST00000447388		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000379164	ENST00000425457		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000379164	ENST00000456393		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000379164	ENST00000372654		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000379164	ENST00000372653		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000379164	ENST00000372652		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000379164	ENST00000372651		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000379164	ENST00000440226		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000379164	ENST00000308733		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000379164	ENST00000483091		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000536695	ENST00000427410		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000536695	ENST00000447388		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000536695	ENST00000425457		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000536695	ENST00000456393		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000536695	ENST00000372654		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000536695	ENST00000372653		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000536695	ENST00000372652		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000536695	ENST00000372651		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000536695	ENST00000440226		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000536695	ENST00000308733		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000536695	ENST00000483091		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000427802	ENST00000427410		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000427802	ENST00000447388		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000427802	ENST00000425457		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000427802	ENST00000456393		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000427802	ENST00000372654		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000427802	ENST00000372653		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000427802	ENST00000372652		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000427802	ENST00000372651		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000427802	ENST00000440226		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000427802	ENST00000308733		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000427802	ENST00000483091		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000511170	ENST00000427410		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000511170	ENST00000447388		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000511170	ENST00000425457		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000511170	ENST00000456393		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000511170	ENST00000372654		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000511170	ENST00000372653		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000511170	ENST00000372652		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000511170	ENST00000372651		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000511170	ENST00000440226		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-3UTR	ENST00000511170	ENST00000308733		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000511170	ENST00000483091		ChiTaRS3.1			BQ012815	FSTL5	chr4	162785581	-	NFYC	chr1	41236781	-
intron-intron	ENST00000418331	ENST00000263390		ChiTaRS3.1			BI019721	PTPRJ	chr11	48018427	+	MED26	chr19	16706400	-
intron-intron	ENST00000440289	ENST00000263390		ChiTaRS3.1			BI019721	PTPRJ	chr11	48018427	+	MED26	chr19	16706400	-
intron-intron	ENST00000526550	ENST00000263390		ChiTaRS3.1			BI019721	PTPRJ	chr11	48018427	+	MED26	chr19	16706400	-
intron-3CDS	ENST00000369817	ENST00000508628		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000369817	ENST00000456466		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000369817	ENST00000582970		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000369817	ENST00000319921		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000369817	ENST00000336301		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000369817	ENST00000427003		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-3CDS	ENST00000479366	ENST00000508628		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000479366	ENST00000456466		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000479366	ENST00000582970		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000479366	ENST00000319921		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000479366	ENST00000336301		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000479366	ENST00000427003		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-3CDS	ENST00000424325	ENST00000508628		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000424325	ENST00000456466		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000424325	ENST00000582970		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000424325	ENST00000319921		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000424325	ENST00000336301		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000424325	ENST00000427003		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-3CDS	ENST00000406022	ENST00000508628		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000406022	ENST00000456466		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000406022	ENST00000582970		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000406022	ENST00000319921		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000406022	ENST00000336301		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-intron	ENST00000406022	ENST00000427003		ChiTaRS3.1			AW581181	RPL10	chrX	153629004	+	RNF213	chr17	78319032	-
intron-3CDS	ENST00000544484	ENST00000544484		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544484	ENST00000357008		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544484	ENST00000309577		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544484	ENST00000544040		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000544484	ENST00000540960		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000544484		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000357008		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000309577		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000544040		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000357008	ENST00000540960		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000544484		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000357008		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000309577		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000544040		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000309577	ENST00000540960		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000544484		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000357008		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000309577		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000544040		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000544040	ENST00000540960		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000544484		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000357008		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000309577		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000544040		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000540960	ENST00000540960		ChiTaRS3.1			CN479401	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-intron	ENST00000263377	ENST00000263377		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000263377	ENST00000371835		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000263377	ENST00000360016		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000263377	ENST00000602230		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000371835	ENST00000263377		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000371835	ENST00000371835		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000371835	ENST00000360016		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000371835	ENST00000602230		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000360016	ENST00000263377		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000360016	ENST00000371835		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000360016	ENST00000360016		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000360016	ENST00000602230		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000602230	ENST00000263377		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000602230	ENST00000371835		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000602230	ENST00000360016		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000602230	ENST00000602230		ChiTaRS3.1			BF060731	BRD4	chr19	15440216	+	BRD4	chr19	15409891	+
intron-intron	ENST00000323963	ENST00000323963		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000323963	ENST00000440191		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000323963	ENST00000356531		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000440191	ENST00000323963		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000440191	ENST00000440191		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000440191	ENST00000356531		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000356531	ENST00000323963		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000356531	ENST00000440191		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-intron	ENST00000356531	ENST00000356531		ChiTaRS3.1			BG979271	EIF4A2	chr3	186506486	-	EIF4A2	chr3	186506836	+
intron-3CDS	ENST00000299563	ENST00000354329		ChiTaRS3.1			BG949101	RNF169	chr11	74531780	-	MYO18A	chr17	27424892	+
intron-intron	ENST00000299563	ENST00000529578		ChiTaRS3.1			BG949101	RNF169	chr11	74531780	-	MYO18A	chr17	27424892	+
intron-intron	ENST00000299563	ENST00000533112		ChiTaRS3.1			BG949101	RNF169	chr11	74531780	-	MYO18A	chr17	27424892	+
intron-intron	ENST00000299563	ENST00000531253		ChiTaRS3.1			BG949101	RNF169	chr11	74531780	-	MYO18A	chr17	27424892	+
intron-intron	ENST00000299563	ENST00000527372		ChiTaRS3.1			BG949101	RNF169	chr11	74531780	-	MYO18A	chr17	27424892	+
5UTR-3CDS	ENST00000412770	ENST00000403903		ChiTaRS3.1			BM765851	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
5UTR-5UTR	ENST00000412770	ENST00000403352		ChiTaRS3.1			BM765851	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-3CDS	ENST00000587283	ENST00000403903		ChiTaRS3.1			BM765851	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-5UTR	ENST00000587283	ENST00000403352		ChiTaRS3.1			BM765851	PPP6R1	chr19	55769801	-	ZGLP1	chr19	10419229	-
intron-intron	ENST00000542817	ENST00000320717		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000542817	ENST00000338435		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000542817	ENST00000409626		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000542817	ENST00000409428		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000542817	ENST00000409215		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000542817	ENST00000471443		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000458643	ENST00000320717		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000458643	ENST00000338435		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000458643	ENST00000409626		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000458643	ENST00000409428		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000458643	ENST00000409215		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000458643	ENST00000471443		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000448012	ENST00000320717		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000448012	ENST00000338435		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000448012	ENST00000409626		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000448012	ENST00000409428		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000448012	ENST00000409215		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000448012	ENST00000471443		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000519305	ENST00000320717		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000519305	ENST00000338435		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000519305	ENST00000409626		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000519305	ENST00000409428		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000519305	ENST00000409215		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-intron	ENST00000519305	ENST00000471443		ChiTaRS3.1			DA217881	NPIPB3	chr16	21868588	+	GLS	chr2	191784351	+
intron-3UTR	ENST00000265107	ENST00000534336		ChiTaRS3.1			BF735251	WDR70	chr5	37616869	-	MALAT1	chr11	65267562	-
intron-3UTR	ENST00000504564	ENST00000534336		ChiTaRS3.1			BF735251	WDR70	chr5	37616869	-	MALAT1	chr11	65267562	-
intron-3UTR	ENST00000510699	ENST00000534336		ChiTaRS3.1			BF735251	WDR70	chr5	37616869	-	MALAT1	chr11	65267562	-
3UTR-3UTR	ENST00000344651	ENST00000344651		ChiTaRS3.1			AA313741	UNC119B	chr12	121159412	-	UNC119B	chr12	121159493	+
3UTR-intron	ENST00000344651	ENST00000539658		ChiTaRS3.1			AA313741	UNC119B	chr12	121159412	-	UNC119B	chr12	121159493	+
intron-3UTR	ENST00000539658	ENST00000344651		ChiTaRS3.1			AA313741	UNC119B	chr12	121159412	-	UNC119B	chr12	121159493	+
intron-intron	ENST00000539658	ENST00000539658		ChiTaRS3.1			AA313741	UNC119B	chr12	121159412	-	UNC119B	chr12	121159493	+
5UTR-intron	ENST00000368694	ENST00000339556		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000368694	ENST00000392622		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000368694	ENST00000392623		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000368694	ENST00000440685		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000368694	ENST00000368699		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000368694	ENST00000491177		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
3UTR-intron	ENST00000495554	ENST00000339556		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
3UTR-intron	ENST00000495554	ENST00000392622		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
3UTR-intron	ENST00000495554	ENST00000392623		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
3UTR-intron	ENST00000495554	ENST00000440685		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
3UTR-intron	ENST00000495554	ENST00000368699		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
3UTR-intron	ENST00000495554	ENST00000491177		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000403433	ENST00000339556		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000403433	ENST00000392622		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000403433	ENST00000392623		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000403433	ENST00000440685		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000403433	ENST00000368699		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
5UTR-intron	ENST00000403433	ENST00000491177		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368690	ENST00000339556		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368690	ENST00000392622		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368690	ENST00000392623		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368690	ENST00000440685		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368690	ENST00000368699		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368690	ENST00000491177		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368687	ENST00000339556		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368687	ENST00000392622		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368687	ENST00000392623		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368687	ENST00000440685		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368687	ENST00000368699		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368687	ENST00000491177		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368686	ENST00000339556		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368686	ENST00000392622		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368686	ENST00000392623		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368686	ENST00000440685		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368686	ENST00000368699		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000368686	ENST00000491177		ChiTaRS3.1			AI830371	CHTOP	chr1	153606824	+	S100A13	chr1	153604213	+
intron-intron	ENST00000011684	ENST00000262715		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000011684	ENST00000556935		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000011684	ENST00000545983		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000536531	ENST00000262715		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000536531	ENST00000556935		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000536531	ENST00000545983		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000396988	ENST00000262715		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000396988	ENST00000556935		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000396988	ENST00000545983		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000449001	ENST00000262715		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000449001	ENST00000556935		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000449001	ENST00000545983		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000538208	ENST00000262715		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000538208	ENST00000556935		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000538208	ENST00000545983		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000304581	ENST00000262715		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000304581	ENST00000556935		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
intron-intron	ENST00000304581	ENST00000545983		ChiTaRS3.1			BF848201	PLEKHG6	chr12	6431605	-	TEP1	chr14	20841593	+
3UTR-3UTR	ENST00000320033	ENST00000320033		ChiTaRS3.1			BM680221	ARL4D	chr17	41478342	-	ARL4D	chr17	41478316	+
Frame-shit	ENST00000330634	ENST00000330634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000330634	ENST00000398337		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000330634	ENST00000392634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000330634	ENST00000481338		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-3CDS	ENST00000398337	ENST00000330634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000398337	ENST00000398337		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000398337	ENST00000392634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000398337	ENST00000481338		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
Frame-shit	ENST00000392634	ENST00000330634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000392634	ENST00000398337		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000392634	ENST00000392634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000392634	ENST00000481338		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-3CDS	ENST00000481338	ENST00000330634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000481338	ENST00000398337		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000481338	ENST00000392634		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000481338	ENST00000481338		ChiTaRS3.1			BM695911	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050796	KMT2A	chr11	118359135	+	AFF1	chr4	87987255	+
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082281	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000434074	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000312040	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000451945	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000529655	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000530500	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000526508	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000524625	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000359513	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000528494	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000526485	ENST00000331825		ChiTaRS3.1			BF858831	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000260570	ENST00000283632		ChiTaRS3.1			BE068971	IFT172	chr2	27680141	+	RMND5A	chr2	87917041	-
intron-intron	ENST00000260570	ENST00000472843		ChiTaRS3.1			BE068971	IFT172	chr2	27680141	+	RMND5A	chr2	87917041	-
intron-intron	ENST00000359466	ENST00000283632		ChiTaRS3.1			BE068971	IFT172	chr2	27680141	+	RMND5A	chr2	87917041	-
intron-intron	ENST00000359466	ENST00000472843		ChiTaRS3.1			BE068971	IFT172	chr2	27680141	+	RMND5A	chr2	87917041	-
intron-intron	ENST00000416524	ENST00000283632		ChiTaRS3.1			BE068971	IFT172	chr2	27680141	+	RMND5A	chr2	87917041	-
intron-intron	ENST00000416524	ENST00000472843		ChiTaRS3.1			BE068971	IFT172	chr2	27680141	+	RMND5A	chr2	87917041	-
intron-3CDS	ENST00000316738	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000316738	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000316738	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000316738	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000316738	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000316738	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000316738	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000555872	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556609	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000267544	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000550103	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000538485	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000316738		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000555872		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000556609		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000267544		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000550103		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000538485		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000556005	ENST00000556005		ChiTaRS3.1			W28051	EFCAB11	chr14	90421104	+	EFCAB11	chr14	90398941	-
intron-3CDS	ENST00000396863	ENST00000396863		ChiTaRS3.1			BE264691	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000396863	ENST00000217026		ChiTaRS3.1			BE264691	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000217026	ENST00000396863		ChiTaRS3.1			BE264691	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000217026	ENST00000217026		ChiTaRS3.1			BE264691	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
3UTR-3UTR	ENST00000374690	ENST00000300151		ChiTaRS3.1			CB163511	AR	chrX	66949475	-	MRPL16	chr11	59573715	-
intron-3UTR	ENST00000513847	ENST00000300151		ChiTaRS3.1			CB163511	AR	chrX	66949475	-	MRPL16	chr11	59573715	-
intron-3UTR	ENST00000504326	ENST00000300151		ChiTaRS3.1			CB163511	AR	chrX	66949475	-	MRPL16	chr11	59573715	-
intron-3UTR	ENST00000396044	ENST00000300151		ChiTaRS3.1			CB163511	AR	chrX	66949475	-	MRPL16	chr11	59573715	-
intron-3UTR	ENST00000396043	ENST00000300151		ChiTaRS3.1			CB163511	AR	chrX	66949475	-	MRPL16	chr11	59573715	-
5CDS-intron	ENST00000344204	ENST00000413052		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000344204	ENST00000369645		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000344204	ENST00000544796		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000344204	ENST00000369644		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-3UTR	ENST00000344204	ENST00000468624		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000344204	ENST00000357443		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000537187	ENST00000413052		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000537187	ENST00000369645		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000537187	ENST00000544796		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000537187	ENST00000369644		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-3UTR	ENST00000537187	ENST00000468624		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000537187	ENST00000357443		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000509967	ENST00000413052		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000509967	ENST00000369645		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000509967	ENST00000544796		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000509967	ENST00000369644		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-3UTR	ENST00000509967	ENST00000468624		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
5CDS-intron	ENST00000509967	ENST00000357443		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000515710	ENST00000413052		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000515710	ENST00000369645		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000515710	ENST00000544796		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000515710	ENST00000369644		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-3UTR	ENST00000515710	ENST00000468624		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000515710	ENST00000357443		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000344135	ENST00000413052		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000344135	ENST00000369645		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000344135	ENST00000544796		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000344135	ENST00000369644		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-3UTR	ENST00000344135	ENST00000468624		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000344135	ENST00000357443		ChiTaRS3.1			BF926051	TRIO	chr5	14369500	-	MOV10	chr1	113241269	+
intron-intron	ENST00000340934	ENST00000435564		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000536095		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000409365		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000331935		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000351439		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000410103		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000358139		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000456212		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000346717		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000340934	ENST00000482538		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000435564		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000536095		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000409365		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000331935		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000351439		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000410103		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000358139		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000456212		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000346717		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000496267	ENST00000482538		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000435564		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000536095		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000409365		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000331935		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000351439		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000410103		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000358139		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000456212		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000346717		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000537020	ENST00000482538		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000435564		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000536095		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000409365		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000331935		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000351439		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000410103		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000358139		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000456212		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000346717		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
intron-intron	ENST00000539697	ENST00000482538		ChiTaRS3.1			BF813941	BROX	chr1	222916071	+	PDE1A	chr2	183288696	-
3UTR-3UTR	ENST00000244061	ENST00000331925		ChiTaRS3.1			BF036781	RNF114	chr20	48569518	-	ACTG1	chr17	79477479	-
3UTR-3UTR	ENST00000244061	ENST00000573283		ChiTaRS3.1			BF036781	RNF114	chr20	48569518	-	ACTG1	chr17	79477479	-
3UTR-3UTR	ENST00000244061	ENST00000575842		ChiTaRS3.1			BF036781	RNF114	chr20	48569518	-	ACTG1	chr17	79477479	-
3UTR-3UTR	ENST00000244061	ENST00000575087		ChiTaRS3.1			BF036781	RNF114	chr20	48569518	-	ACTG1	chr17	79477479	-
In-frame	ENST00000346169	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000346169	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000346169	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000346169	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000414031	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000414031	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000414031	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000392537	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000392537	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000392537	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000382330	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000382330	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000382330	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000350481	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000350481	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000350481	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000352767	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000352767	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000352767	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000427845	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000427845	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000427845	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000342981	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000342981	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000342981	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000319274	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000319274	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000319274	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000424196	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000424196	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000424196	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000411531	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000411531	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000411531	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000441154	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000441154	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000441154	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000434061	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000434061	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000434061	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000346169		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000414031		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000392537		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000382330		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000350481		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000352767		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000427845		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000342981		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000319274		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000424196		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000411531		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
In-frame	ENST00000435046	ENST00000441154		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000435046	ENST00000434061		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
Frame-shit	ENST00000435046	ENST00000435046		ChiTaRS3.1			AU133771	EIF4G1	chr3	184040965	+	EIF4G1	chr3	184038480	+
intron-intron	ENST00000566228	ENST00000256953		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000566228	ENST00000538313		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000566228	ENST00000536465		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000566228	ENST00000546331		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000566228	ENST00000537647		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000566228	ENST00000437578		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000323433	ENST00000256953		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000323433	ENST00000538313		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000323433	ENST00000536465		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000323433	ENST00000546331		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000323433	ENST00000537647		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000323433	ENST00000437578		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000306030	ENST00000256953		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000306030	ENST00000538313		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000306030	ENST00000536465		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000306030	ENST00000546331		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000306030	ENST00000537647		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000306030	ENST00000437578		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000568359	ENST00000256953		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000568359	ENST00000538313		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000568359	ENST00000536465		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000568359	ENST00000546331		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000568359	ENST00000537647		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-intron	ENST00000568359	ENST00000437578		ChiTaRS3.1			DB099261	SNX29	chr16	12460896	-	RERG	chr12	15282395	-
intron-5UTR	ENST00000251595	ENST00000362042		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000251595	ENST00000585291		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000251595	ENST00000357480		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000251595	ENST00000361665		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-3UTR	ENST00000251595	ENST00000579481		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000251595	ENST00000582155		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000251595	ENST00000583378		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000251595	ENST00000536222		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000397806	ENST00000362042		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000397806	ENST00000585291		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000397806	ENST00000357480		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-5UTR	ENST00000397806	ENST00000361665		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-3UTR	ENST00000397806	ENST00000579481		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000397806	ENST00000582155		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000397806	ENST00000583378		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000397806	ENST00000536222		ChiTaRS3.1			AI131561	HBA2	chr16	223469	-	NFE2L1	chr17	46128156	-
intron-intron	ENST00000392676	ENST00000397293		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392676	ENST00000424878		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392676	ENST00000349314		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392676	ENST00000361710		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392676	ENST00000397287		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392676	ENST00000487423		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392677	ENST00000397293		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392677	ENST00000424878		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392677	ENST00000349314		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392677	ENST00000361710		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392677	ENST00000397287		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000392677	ENST00000487423		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000588877	ENST00000397293		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000588877	ENST00000424878		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000588877	ENST00000349314		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000588877	ENST00000361710		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000588877	ENST00000397287		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000588877	ENST00000487423		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000589609	ENST00000397293		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000589609	ENST00000424878		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000589609	ENST00000349314		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000589609	ENST00000361710		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000589609	ENST00000397287		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000589609	ENST00000487423		ChiTaRS3.1			CV335051	ABCA5	chr17	67251984	+	APOL3	chr22	36555642	-
intron-intron	ENST00000396153	ENST00000396153		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000396153	ENST00000371778		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000396153	ENST00000545823		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000396153	ENST00000472808		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000396153		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000371778		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000545823		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000472808		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000396153		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000371778		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000545823		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000472808		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000396153		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000371778		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000545823		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000472808		ChiTaRS3.1			AA664391	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
Frame-shit	ENST00000535342	ENST00000535741		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
Frame-shit	ENST00000535342	ENST00000510413		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000535342	ENST00000503716		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000535342	ENST00000357115		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000535342	ENST00000507224		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
In-frame	ENST00000392769	ENST00000535741		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
In-frame	ENST00000392769	ENST00000510413		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000392769	ENST00000503716		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000392769	ENST00000357115		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000392769	ENST00000507224		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-3CDS	ENST00000541355	ENST00000535741		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-3CDS	ENST00000541355	ENST00000510413		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000541355	ENST00000503716		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000541355	ENST00000357115		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000541355	ENST00000507224		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
In-frame	ENST00000537949	ENST00000535741		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
In-frame	ENST00000537949	ENST00000510413		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000537949	ENST00000503716		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000537949	ENST00000357115		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
5CDS-intron	ENST00000537949	ENST00000507224		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-3CDS	ENST00000317442	ENST00000535741		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-3CDS	ENST00000317442	ENST00000510413		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000317442	ENST00000503716		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000317442	ENST00000357115		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000317442	ENST00000507224		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-3CDS	ENST00000580482	ENST00000535741		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-3CDS	ENST00000580482	ENST00000510413		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000580482	ENST00000503716		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000580482	ENST00000357115		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000580482	ENST00000507224		ChiTaRS3.1			CR627301	CEP112	chr17	64171161	-	LRBA	chr4	151683001	-
intron-intron	ENST00000398571	ENST00000261965		ChiTaRS3.1			AW893271	USP34	chr2	61474231	-	TUBGCP3	chr13	113169009	-
intron-intron	ENST00000398571	ENST00000375669		ChiTaRS3.1			AW893271	USP34	chr2	61474231	-	TUBGCP3	chr13	113169009	-
intron-intron	ENST00000398571	ENST00000462580		ChiTaRS3.1			AW893271	USP34	chr2	61474231	-	TUBGCP3	chr13	113169009	-
intron-intron	ENST00000472689	ENST00000261965		ChiTaRS3.1			AW893271	USP34	chr2	61474231	-	TUBGCP3	chr13	113169009	-
intron-intron	ENST00000472689	ENST00000375669		ChiTaRS3.1			AW893271	USP34	chr2	61474231	-	TUBGCP3	chr13	113169009	-
intron-intron	ENST00000472689	ENST00000462580		ChiTaRS3.1			AW893271	USP34	chr2	61474231	-	TUBGCP3	chr13	113169009	-
5CDS-intron	ENST00000233143	ENST00000375664		ChiTaRS3.1			BI016131	TMSB10	chr2	85133175	-	WAC	chr10	28826619	+
5CDS-intron	ENST00000233143	ENST00000375646		ChiTaRS3.1			BI016131	TMSB10	chr2	85133175	-	WAC	chr10	28826619	+
5CDS-intron	ENST00000233143	ENST00000347934		ChiTaRS3.1			BI016131	TMSB10	chr2	85133175	-	WAC	chr10	28826619	+
5CDS-intron	ENST00000233143	ENST00000354911		ChiTaRS3.1			BI016131	TMSB10	chr2	85133175	-	WAC	chr10	28826619	+
5CDS-intron	ENST00000233143	ENST00000428935		ChiTaRS3.1			BI016131	TMSB10	chr2	85133175	-	WAC	chr10	28826619	+
5CDS-intron	ENST00000233143	ENST00000532233		ChiTaRS3.1			BI016131	TMSB10	chr2	85133175	-	WAC	chr10	28826619	+
intron-intron	ENST00000370859	ENST00000272238		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-3UTR	ENST00000370859	ENST00000381661		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-intron	ENST00000370855	ENST00000272238		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-3UTR	ENST00000370855	ENST00000381661		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-intron	ENST00000535611	ENST00000272238		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-3UTR	ENST00000535611	ENST00000381661		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-intron	ENST00000469525	ENST00000272238		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
intron-3UTR	ENST00000469525	ENST00000381661		ChiTaRS3.1			AW952701	SLC44A5	chr1	76071809	-	ATP6V1C2	chr2	10923876	+
3UTR-intron	ENST00000534336	ENST00000356462		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000400345		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000589054		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000256832		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000382850		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000256830		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000588516		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000456986		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000435432		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000357895		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000586263		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000456173		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
3UTR-intron	ENST00000534336	ENST00000431212		ChiTaRS3.1			BX501711	MALAT1	chr11	65269639	+	NEDD4L	chr18	56056539	+
intron-intron	ENST00000396720	ENST00000396720		ChiTaRS3.1			BI518681	GLTSCR1	chr19	48196935	+	GLTSCR1	chr19	48179060	+
3UTR-intron	ENST00000294489	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
3UTR-intron	ENST00000294489	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
3UTR-intron	ENST00000294489	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
3UTR-intron	ENST00000376057	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
3UTR-intron	ENST00000376057	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
3UTR-intron	ENST00000376057	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000509009	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000509009	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000509009	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000376061	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000376061	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000376061	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000513143	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000513143	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000513143	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000487038	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000487038	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000487038	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000475043	ENST00000436874		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000475043	ENST00000261219		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
intron-intron	ENST00000475043	ENST00000356859		ChiTaRS3.1			BU677131	PDPN	chr1	13944126	-	VEZT	chr12	95667920	-
5CDS-intron	ENST00000373358	ENST00000281928		ChiTaRS3.1			BE501361	PBDC1	chrX	75397620	-	MED13L	chr12	116647085	+
5CDS-intron	ENST00000373358	ENST00000551197		ChiTaRS3.1			BE501361	PBDC1	chrX	75397620	-	MED13L	chr12	116647085	+
5CDS-intron	ENST00000373357	ENST00000281928		ChiTaRS3.1			BE501361	PBDC1	chrX	75397620	-	MED13L	chr12	116647085	+
5CDS-intron	ENST00000373357	ENST00000551197		ChiTaRS3.1			BE501361	PBDC1	chrX	75397620	-	MED13L	chr12	116647085	+
intron-3CDS	ENST00000434000	ENST00000352456		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000434000	ENST00000595018		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000434000	ENST00000392006		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000434000	ENST00000378215		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000434000	ENST00000602130		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000434000	ENST00000593587		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000434000	ENST00000263367		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3UTR	ENST00000434000	ENST00000594207		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000352456		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000595018		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000392006		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000378215		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000602130		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000593587		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000591680	ENST00000263367		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3UTR	ENST00000591680	ENST00000594207		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000352456		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000595018		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000392006		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000378215		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000602130		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000593587		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000586265	ENST00000263367		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3UTR	ENST00000586265	ENST00000594207		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000352456		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000595018		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000392006		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000378215		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000602130		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000593587		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000592154	ENST00000263367		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3UTR	ENST00000592154	ENST00000594207		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000352456		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000595018		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000392006		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000378215		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000602130		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000593587		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3CDS	ENST00000588554	ENST00000263367		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-3UTR	ENST00000588554	ENST00000594207		ChiTaRS3.1			AW389911	GPATCH8	chr17	42475215	+	HNRNPUL1	chr19	41782168	+
intron-intron	ENST00000216951	ENST00000439211		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000216951	ENST00000505337		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000216951	ENST00000511032		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000216951	ENST00000504396		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000216951	ENST00000513048		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000541098	ENST00000439211		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000541098	ENST00000505337		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000541098	ENST00000511032		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000541098	ENST00000504396		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000541098	ENST00000513048		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000451957	ENST00000439211		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000451957	ENST00000505337		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000451957	ENST00000511032		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000451957	ENST00000504396		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000451957	ENST00000513048		ChiTaRS3.1			L42531	GSS	chr20	33516405	-	DHFR	chr5	79946815	-
intron-intron	ENST00000288670	ENST00000535742		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000288670	ENST00000546025		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000288670	ENST00000345254		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000288670	ENST00000540668		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000288670	ENST00000339365		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000288670	ENST00000411652		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000288670	ENST00000496827		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000535742		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000546025		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000345254		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000540668		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000339365		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000411652		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000475377	ENST00000496827		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000535742		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000546025		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000345254		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000540668		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000339365		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000411652		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-intron	ENST00000497192	ENST00000496827		ChiTaRS3.1			BG998981	FMNL2	chr2	153300686	+	SEC24C	chr10	75526109	+
intron-3CDS	ENST00000380968	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000380968	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000380968	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000380968	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000355774	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000355774	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000355774	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000355774	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000238662	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000238662	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000238662	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000238662	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000556257	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000556257	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000556257	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000556257	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000556740	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000556740	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000556740	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000556740	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000544985	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000544985	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000544985	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000544985	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000555671	ENST00000289416		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000555671	ENST00000440284		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000555671	ENST00000450120		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-intron	ENST00000555671	ENST00000567387		ChiTaRS3.1			BQ316181	MLH3	chr14	75485719	+	ACSM3	chr16	20792103	+
intron-3CDS	ENST00000316881	ENST00000404233		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000316881	ENST00000529972		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000316881	ENST00000525859		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000316881	ENST00000543287		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000573108	ENST00000404233		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000573108	ENST00000529972		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000573108	ENST00000525859		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000573108	ENST00000543287		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000537230	ENST00000404233		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000537230	ENST00000529972		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000537230	ENST00000525859		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000537230	ENST00000543287		ChiTaRS3.1			BI050181	TRIM25	chr17	54972325	-	HYOU1	chr11	118920283	+
intron-3CDS	ENST00000435706	ENST00000316623		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000435706	ENST00000561429		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000435706	ENST00000560355		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-3CDS	ENST00000264331	ENST00000316623		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000264331	ENST00000561429		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000264331	ENST00000560355		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-3CDS	ENST00000542520	ENST00000316623		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000542520	ENST00000561429		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000542520	ENST00000560355		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-3CDS	ENST00000540199	ENST00000316623		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000540199	ENST00000561429		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000540199	ENST00000560355		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-3CDS	ENST00000475717	ENST00000316623		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000475717	ENST00000561429		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-intron	ENST00000475717	ENST00000560355		ChiTaRS3.1			AW609921	TOP2B	chr3	25650827	+	FBN1	chr15	48805839	+
intron-3UTR	ENST00000571133	ENST00000571133		ChiTaRS3.1			BQ353791	RSL1D1	chr16	11930505	+	RSL1D1	chr16	11930266	-
intron-intron	ENST00000571133	ENST00000542106		ChiTaRS3.1			BQ353791	RSL1D1	chr16	11930505	+	RSL1D1	chr16	11930266	-
intron-3UTR	ENST00000542106	ENST00000571133		ChiTaRS3.1			BQ353791	RSL1D1	chr16	11930505	+	RSL1D1	chr16	11930266	-
intron-intron	ENST00000542106	ENST00000542106		ChiTaRS3.1			BQ353791	RSL1D1	chr16	11930505	+	RSL1D1	chr16	11930266	-
intron-intron	ENST00000366760	ENST00000366760		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366760	ENST00000315781		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366760	ENST00000366759		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366760	ENST00000480897		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000315781	ENST00000366760		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000315781	ENST00000315781		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000315781	ENST00000366759		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000315781	ENST00000480897		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366759	ENST00000366760		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366759	ENST00000315781		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366759	ENST00000366759		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000366759	ENST00000480897		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000480897	ENST00000366760		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000480897	ENST00000315781		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000480897	ENST00000366759		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-intron	ENST00000480897	ENST00000480897		ChiTaRS3.1			BE007891	SNAP47	chr1	227934334	+	SNAP47	chr1	227933662	+
intron-3CDS	ENST00000262316	ENST00000262316		ChiTaRS3.1			BG035821	RHBDF1	chr16	108164	+	RHBDF1	chr16	108465	-
intron-intron	ENST00000262316	ENST00000454039		ChiTaRS3.1			BG035821	RHBDF1	chr16	108164	+	RHBDF1	chr16	108465	-
intron-3CDS	ENST00000454039	ENST00000262316		ChiTaRS3.1			BG035821	RHBDF1	chr16	108164	+	RHBDF1	chr16	108465	-
intron-intron	ENST00000454039	ENST00000454039		ChiTaRS3.1			BG035821	RHBDF1	chr16	108164	+	RHBDF1	chr16	108465	-
intron-3CDS	ENST00000417626	ENST00000417626		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000417626	ENST00000436390		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000417626	ENST00000429673		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000417626	ENST00000336089		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-intron	ENST00000417626	ENST00000484043		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000436390	ENST00000417626		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000436390	ENST00000436390		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000436390	ENST00000429673		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000436390	ENST00000336089		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-intron	ENST00000436390	ENST00000484043		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000429673	ENST00000417626		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000429673	ENST00000436390		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000429673	ENST00000429673		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000429673	ENST00000336089		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-intron	ENST00000429673	ENST00000484043		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000336089	ENST00000417626		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000336089	ENST00000436390		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000336089	ENST00000429673		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000336089	ENST00000336089		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-intron	ENST00000336089	ENST00000484043		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000484043	ENST00000417626		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000484043	ENST00000436390		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000484043	ENST00000429673		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-3CDS	ENST00000484043	ENST00000336089		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-intron	ENST00000484043	ENST00000484043		ChiTaRS3.1			BF338431	IFRD2	chr3	50326761	+	IFRD2	chr3	50326717	-
intron-5UTR	ENST00000301067	ENST00000216297		ChiTaRS3.1			AF152961	KMT2D	chr12	49432458	+	SUPT16H	chr14	21852143	-
intron-5UTR	ENST00000301067	ENST00000555943		ChiTaRS3.1			AF152961	KMT2D	chr12	49432458	+	SUPT16H	chr14	21852143	-
intron-5UTR	ENST00000549743	ENST00000216297		ChiTaRS3.1			AF152961	KMT2D	chr12	49432458	+	SUPT16H	chr14	21852143	-
intron-5UTR	ENST00000549743	ENST00000555943		ChiTaRS3.1			AF152961	KMT2D	chr12	49432458	+	SUPT16H	chr14	21852143	-
intron-intron	ENST00000238855	ENST00000272321		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409199		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409120		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000398544		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409562		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409835		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000272321		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409199		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409120		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000398544		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409562		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409835		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000272321		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409199		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409120		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000398544		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409562		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409835		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000272321		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409199		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409120		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000398544		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409562		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409835		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000272321		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409199		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409120		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000398544		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409562		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409835		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000272321		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409199		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409120		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000398544		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409562		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409835		ChiTaRS3.1			CR736341	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-3UTR	ENST00000560302	ENST00000315691		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-intron	ENST00000560302	ENST00000493396		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-intron	ENST00000560302	ENST00000495414		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-3UTR	ENST00000560302	ENST00000441925		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-3UTR	ENST00000394518	ENST00000315691		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-intron	ENST00000394518	ENST00000493396		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-intron	ENST00000394518	ENST00000495414		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-3UTR	ENST00000394518	ENST00000441925		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
5CDS-3UTR	ENST00000361243	ENST00000315691		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
5CDS-intron	ENST00000361243	ENST00000493396		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
5CDS-intron	ENST00000361243	ENST00000495414		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
5CDS-3UTR	ENST00000361243	ENST00000441925		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-3UTR	ENST00000560579	ENST00000315691		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-intron	ENST00000560579	ENST00000493396		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-intron	ENST00000560579	ENST00000495414		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
intron-3UTR	ENST00000560579	ENST00000441925		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-3UTR	ENST00000394510	ENST00000315691		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-intron	ENST00000394510	ENST00000493396		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-intron	ENST00000394510	ENST00000495414		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
3UTR-3UTR	ENST00000394510	ENST00000441925		ChiTaRS3.1			AF127481	AKAP13	chr15	86288841	+	C3orf58	chr3	143710481	-
5UTR-5UTR	ENST00000400098	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000400098	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000400098	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000400100	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000400100	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000400097	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000400097	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-3UTR	ENST00000553597	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-intron	ENST00000553597	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000390687	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000390687	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000346403	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000346403	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000554227	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000554227	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000577565	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000577565	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000400098		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000400100		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000400097		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-3UTR	ENST00000444203	ENST00000553597		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000390687		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-intron	ENST00000444203	ENST00000346403		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000554227		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000577565		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000444203		ChiTaRS3.1			BE273851	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-intron	ENST00000525144	ENST00000525144		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525144	ENST00000529097		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525144	ENST00000525704		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525144	ENST00000533026		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525144	ENST00000416561		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000529097	ENST00000525144		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000529097	ENST00000529097		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000529097	ENST00000525704		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000529097	ENST00000533026		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000529097	ENST00000416561		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525704	ENST00000525144		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525704	ENST00000529097		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525704	ENST00000525704		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525704	ENST00000533026		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000525704	ENST00000416561		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000533026	ENST00000525144		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000533026	ENST00000529097		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000533026	ENST00000525704		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000533026	ENST00000533026		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000533026	ENST00000416561		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000416561	ENST00000525144		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000416561	ENST00000529097		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000416561	ENST00000525704		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000416561	ENST00000533026		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000416561	ENST00000416561		ChiTaRS3.1			BF362671	KIRREL3	chr11	126811126	+	KIRREL3	chr11	126811201	-
intron-intron	ENST00000331018	ENST00000263228		ChiTaRS3.1			AW362811	TTLL1	chr22	43443527	+	UBE2R2	chr9	33907867	+
intron-intron	ENST00000266254	ENST00000263228		ChiTaRS3.1			AW362811	TTLL1	chr22	43443527	+	UBE2R2	chr9	33907867	+
intron-intron	ENST00000445824	ENST00000263228		ChiTaRS3.1			AW362811	TTLL1	chr22	43443527	+	UBE2R2	chr9	33907867	+
intron-intron	ENST00000421177	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000421177	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000421177	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000421177	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000513555	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000513555	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000513555	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000513555	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000450293	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000450293	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000450293	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000450293	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000505246	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000505246	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000505246	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000505246	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000506380	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000506380	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000506380	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000506380	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000397958	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000397958	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000397958	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000397958	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000433139	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000433139	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000433139	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000433139	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000504171	ENST00000538962		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000504171	ENST00000309195		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000504171	ENST00000407693		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000504171	ENST00000238248		ChiTaRS3.1			AA130861	NSG1	chr4	4355416	+	PTGR1	chr9	114351101	+
intron-intron	ENST00000020926	ENST00000525037		ChiTaRS3.1			Y07701	SYT13	chr11	45263063	+	NPEPPS	chr17	45608604	+
intron-intron	ENST00000020926	ENST00000530173		ChiTaRS3.1			Y07701	SYT13	chr11	45263063	+	NPEPPS	chr17	45608604	+
intron-5UTR	ENST00000020926	ENST00000322157		ChiTaRS3.1			Y07701	SYT13	chr11	45263063	+	NPEPPS	chr17	45608604	+
intron-intron	ENST00000020926	ENST00000544660		ChiTaRS3.1			Y07701	SYT13	chr11	45263063	+	NPEPPS	chr17	45608604	+
intron-3CDS	ENST00000435667	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000435667		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000440156		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000455077		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000437179		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000388777		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000454389		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000446700		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000425128		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000445684		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000428386		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000295736		ChiTaRS3.1			AA216661	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-intron	ENST00000295851	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000295851	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000295851	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000295851	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261017	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261017	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261017	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261017	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430418	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430418	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430418	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430418	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000424558	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000424558	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000424558	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000424558	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261016	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261016	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261016	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261016	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000422511	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000422511	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000422511	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000422511	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430574	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430574	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430574	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000430574	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261018	ENST00000361924		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261018	ENST00000435830		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261018	ENST00000444882		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
intron-intron	ENST00000261018	ENST00000356847		ChiTaRS3.1			BF805291	ABI2	chr2	204250483	-	GOLGA4	chr3	37309437	+
5CDS-5UTR	ENST00000397397	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397397	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397397	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397397	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397397	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397397	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397397	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397397	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397397	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397397	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397411	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397411	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397411	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397411	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397396	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397396	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397396	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397396	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397408	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397408	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397408	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397408	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397406	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397406	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397406	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397406	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000409543	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000409543	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409543	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000409543	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000525201	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000525201	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000525201	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000525201	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397404	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397404	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000397404	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000397404	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000346501	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000346501	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000346501	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000346501	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000397397		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000409531	ENST00000397411		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000397396		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000397408		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000397406		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000409531	ENST00000409543		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000525201		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000397404		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-5UTR	ENST00000409531	ENST00000346501		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
5CDS-intron	ENST00000409531	ENST00000409531		ChiTaRS3.1			CB528901	TSPAN4	chr11	865932	-	TSPAN4	chr11	847226	+
intron-3UTR	ENST00000253778	ENST00000253778		ChiTaRS3.1			BE841311	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-intron	ENST00000253778	ENST00000520165		ChiTaRS3.1			BE841311	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-3UTR	ENST00000520165	ENST00000253778		ChiTaRS3.1			BE841311	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
intron-intron	ENST00000520165	ENST00000520165		ChiTaRS3.1			BE841311	GFPT2	chr5	179728102	+	GFPT2	chr5	179727892	-
3UTR-3CDS	ENST00000422256	ENST00000290776		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-5UTR	ENST00000422256	ENST00000537605		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-5UTR	ENST00000422256	ENST00000535318		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-5UTR	ENST00000422256	ENST00000565874		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-intron	ENST00000422256	ENST00000565951		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-3CDS	ENST00000470416	ENST00000290776		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-5UTR	ENST00000470416	ENST00000537605		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-5UTR	ENST00000470416	ENST00000535318		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-5UTR	ENST00000470416	ENST00000565874		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-intron	ENST00000470416	ENST00000565951		ChiTaRS3.1			AF542551	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-3UTR	ENST00000371989	ENST00000216484		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-intron	ENST00000371989	ENST00000556264		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-3UTR	ENST00000485435	ENST00000216484		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-intron	ENST00000485435	ENST00000556264		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-3UTR	ENST00000545297	ENST00000216484		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-intron	ENST00000545297	ENST00000556264		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-3UTR	ENST00000467910	ENST00000216484		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-intron	ENST00000467910	ENST00000556264		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-3UTR	ENST00000371991	ENST00000216484		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-intron	ENST00000371991	ENST00000556264		ChiTaRS3.1			N98751	SURF4	chr9	136228561	+	SPTLC2	chr14	77972559	+
intron-3CDS	ENST00000418842	ENST00000011292		ChiTaRS3.1			BE969791	GCG	chr2	163004002	-	CPA1	chr7	130023244	+
intron-3CDS	ENST00000418842	ENST00000484324		ChiTaRS3.1			BE969791	GCG	chr2	163004002	-	CPA1	chr7	130023244	+
intron-3CDS	ENST00000375497	ENST00000011292		ChiTaRS3.1			BE969791	GCG	chr2	163004002	-	CPA1	chr7	130023244	+
intron-3CDS	ENST00000375497	ENST00000484324		ChiTaRS3.1			BE969791	GCG	chr2	163004002	-	CPA1	chr7	130023244	+
intron-intron	ENST00000519937	ENST00000519937		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000519937	ENST00000342375		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000519937	ENST00000393822		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000519937	ENST00000409383		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000342375	ENST00000519937		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000342375	ENST00000342375		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000342375	ENST00000393822		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000342375	ENST00000409383		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000393822	ENST00000519937		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000393822	ENST00000342375		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000393822	ENST00000393822		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000393822	ENST00000409383		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000409383	ENST00000519937		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000409383	ENST00000342375		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000409383	ENST00000393822		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
intron-intron	ENST00000409383	ENST00000409383		ChiTaRS3.1			BF849841	SFTPB	chr2	85891990	+	SFTPB	chr2	85892117	-
3UTR-3CDS	ENST00000357710	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000357710	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000324501	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000324501	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000344094	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000344094	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000261970	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000261970	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000394164	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000394164	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-3CDS	ENST00000557511	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-3CDS	ENST00000557511	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000406768	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
3UTR-3CDS	ENST00000406768	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-3CDS	ENST00000394157	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-3CDS	ENST00000394157	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-3CDS	ENST00000553447	ENST00000360538		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-3CDS	ENST00000553447	ENST00000379858		ChiTaRS3.1			BF839841	PSEN1	chr14	73686233	-	TOPORS	chr9	32542623	+
intron-intron	ENST00000296861	ENST00000468306		ChiTaRS3.1			BE720121	TNFRSF21	chr6	47253752	-	MAMLD1	chrX	149540925	+
intron-intron	ENST00000296861	ENST00000370401		ChiTaRS3.1			BE720121	TNFRSF21	chr6	47253752	-	MAMLD1	chrX	149540925	+
intron-intron	ENST00000296861	ENST00000432680		ChiTaRS3.1			BE720121	TNFRSF21	chr6	47253752	-	MAMLD1	chrX	149540925	+
intron-intron	ENST00000296861	ENST00000262858		ChiTaRS3.1			BE720121	TNFRSF21	chr6	47253752	-	MAMLD1	chrX	149540925	+
intron-intron	ENST00000296861	ENST00000426613		ChiTaRS3.1			BE720121	TNFRSF21	chr6	47253752	-	MAMLD1	chrX	149540925	+
intron-intron	ENST00000296861	ENST00000455522		ChiTaRS3.1			BE720121	TNFRSF21	chr6	47253752	-	MAMLD1	chrX	149540925	+
intron-3CDS	ENST00000311573	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000311573	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000311573	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000368340	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000368340	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000368340	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000347088	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000347088	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000347088	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000361831	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000361831	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000361831	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000355499	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000355499	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000355499	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000404643	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000404643	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000404643	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000407221	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000407221	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000407221	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000359205	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000359205	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000359205	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000295566	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000295566	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000295566	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000368330	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000368330	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000368330	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000368339	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000368339	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000368339	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000535662	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000535662	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000535662	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000405763	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000405763	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000405763	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000438245	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000438245	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000438245	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000476093	ENST00000271526		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-3CDS	ENST00000476093	ENST00000353233		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
intron-intron	ENST00000476093	ENST00000491853		ChiTaRS3.1			BI009431	YY1AP1	chr1	155736379	-	PRCC	chr1	156770241	+
5CDS-intron	ENST00000401886	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401886	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401886	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401886	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000447208	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000447208	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000447208	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000447208	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000398042	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000398042	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000398042	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000398042	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000432883	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000432883	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000432883	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000432883	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000327374	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000327374	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000327374	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000327374	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000479679	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000479679	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000479679	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000479679	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401833	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401833	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401833	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
5CDS-intron	ENST00000401833	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000434570	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000434570	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000434570	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000434570	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000420290	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000420290	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000420290	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000420290	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000456048	ENST00000466152		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000456048	ENST00000371588		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000456048	ENST00000371582		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
3UTR-intron	ENST00000456048	ENST00000371583		ChiTaRS3.1			AK057461	TANGO2	chr22	20052882	+	DPM1	chr20	49563894	+
intron-intron	ENST00000375856	ENST00000536378		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-intron	ENST00000375856	ENST00000231790		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-intron	ENST00000375856	ENST00000458205		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-intron	ENST00000375856	ENST00000539477		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-intron	ENST00000375856	ENST00000455445		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-intron	ENST00000375856	ENST00000435176		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-intron	ENST00000375856	ENST00000492474		ChiTaRS3.1			CA407691	IRS2	chr13	110431670	-	MLH1	chr3	37091984	+
intron-3CDS	ENST00000513610	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000513610	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000513610	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000513610	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000513610	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000513610	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000513610	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-3CDS	ENST00000507288	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000507288	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000507288	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000507288	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000507288	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000507288	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000507288	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-3CDS	ENST00000274203	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000274203	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000274203	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000274203	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000274203	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000274203	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000274203	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-3CDS	ENST00000515803	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000515803	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000515803	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000515803	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000515803	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000515803	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000515803	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-3CDS	ENST00000427430	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000427430	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000427430	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000427430	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000427430	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000427430	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000427430	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-3CDS	ENST00000505695	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000505695	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000505695	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000505695	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000505695	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000505695	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000505695	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-3CDS	ENST00000512061	ENST00000513610		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000512061	ENST00000507288		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000512061	ENST00000274203		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000512061	ENST00000515803		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000512061	ENST00000427430		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000512061	ENST00000505695		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-5UTR	ENST00000512061	ENST00000512061		ChiTaRS3.1			CA337601	MYO10	chr5	16690003	-	MYO10	chr5	16704796	-
intron-intron	ENST00000468410	ENST00000553277		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000468410	ENST00000243077		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000468410	ENST00000338962		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000468410	ENST00000554174		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000468410	ENST00000553446		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000222574	ENST00000553277		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000222574	ENST00000243077		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000222574	ENST00000338962		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000222574	ENST00000554174		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000222574	ENST00000553446		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000485846	ENST00000553277		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000485846	ENST00000243077		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000485846	ENST00000338962		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000485846	ENST00000554174		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000485846	ENST00000553446		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000461963	ENST00000553277		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000461963	ENST00000243077		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000461963	ENST00000338962		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000461963	ENST00000554174		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-intron	ENST00000461963	ENST00000553446		ChiTaRS3.1			BF856941	HBP1	chr7	106838260	-	LRP1	chr12	57600474	+
intron-3UTR	ENST00000479481	ENST00000466801		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000479481	ENST00000409321		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000479481	ENST00000409115		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000479481	ENST00000341369		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000479481	ENST00000409683		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000479481	ENST00000410064		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000370992	ENST00000466801		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000370992	ENST00000409321		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000370992	ENST00000409115		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000370992	ENST00000341369		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000370992	ENST00000409683		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000370992	ENST00000410064		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000536831	ENST00000466801		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000536831	ENST00000409321		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000536831	ENST00000409115		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000536831	ENST00000341369		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000536831	ENST00000409683		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000536831	ENST00000410064		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000315563	ENST00000466801		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000315563	ENST00000409321		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000315563	ENST00000409115		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000315563	ENST00000341369		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000315563	ENST00000409683		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000315563	ENST00000410064		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000414986	ENST00000466801		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000414986	ENST00000409321		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000414986	ENST00000409115		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000414986	ENST00000341369		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000414986	ENST00000409683		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000414986	ENST00000410064		ChiTaRS3.1			BM473671	RRP12	chr10	99125871	-	PTMA	chr2	232576674	+
intron-3UTR	ENST00000395957	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395957	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395957	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000395957	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395958	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395958	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395958	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000395958	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000457309	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000457309	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000457309	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000457309	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395956	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395956	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395956	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000395956	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000353245	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000353245	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000353245	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000353245	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000522542	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000522542	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000522542	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000522542	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000521309	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000521309	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000521309	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000521309	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000522819	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000522819	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000522819	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000522819	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395953	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395953	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395953	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000395953	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395948	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395948	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395948	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000395948	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395951	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395951	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000395951	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000395951	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000419477	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000419477	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000419477	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000419477	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000492736	ENST00000429709		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000492736	ENST00000450518		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-3UTR	ENST00000492736	ENST00000392662		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000492736	ENST00000467615		ChiTaRS3.1			BF754131	YWHAZ	chr8	101947415	-	ACTL6A	chr3	179305922	-
intron-intron	ENST00000487099	ENST00000366987		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000487099	ENST00000341491		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000487099	ENST00000366985		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-3UTR	ENST00000487099	ENST00000492118		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000487099	ENST00000336937		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000487099	ENST00000366983		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000373584	ENST00000366987		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000373584	ENST00000341491		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000373584	ENST00000366985		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-3UTR	ENST00000373584	ENST00000492118		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000373584	ENST00000336937		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000373584	ENST00000366983		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000416460	ENST00000366987		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000416460	ENST00000341491		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000416460	ENST00000366985		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-3UTR	ENST00000416460	ENST00000492118		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000416460	ENST00000336937		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000416460	ENST00000366983		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000344523	ENST00000366987		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000344523	ENST00000341491		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000344523	ENST00000366985		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-3UTR	ENST00000344523	ENST00000492118		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000344523	ENST00000336937		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-intron	ENST00000344523	ENST00000366983		ChiTaRS3.1			BF853631	NR6A1	chr9	127441085	-	ATF3	chr1	212786881	+
intron-3CDS	ENST00000377298	ENST00000377298		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377298	ENST00000361311		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377298	ENST00000377288		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000377298	ENST00000477264		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000361311	ENST00000377298		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000361311	ENST00000361311		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000361311	ENST00000377288		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000361311	ENST00000477264		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377288	ENST00000377298		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377288	ENST00000361311		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377288	ENST00000377288		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000377288	ENST00000477264		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000477264	ENST00000377298		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000477264	ENST00000361311		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000477264	ENST00000377288		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000477264	ENST00000477264		ChiTaRS3.1			BQ882651	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3UTR	ENST00000325722	ENST00000313949		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000371098		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000325722	ENST00000371075		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000325722	ENST00000371100		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000371099		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000371102		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000325722	ENST00000464624		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000306120		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000371095		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000371085		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000354359		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000265620		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000306090		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000325722	ENST00000371081		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000373266	ENST00000313949		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000371098		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000373266	ENST00000371075		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000373266	ENST00000371100		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000371099		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000371102		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000373266	ENST00000464624		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000306120		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000371095		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000371085		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000354359		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000265620		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000306090		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000373266	ENST00000371081		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000485551	ENST00000313949		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000371098		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000485551	ENST00000371075		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000485551	ENST00000371100		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000371099		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000371102		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3UTR	ENST00000485551	ENST00000464624		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000306120		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000371095		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000371085		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000354359		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000265620		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000306090		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-intron	ENST00000485551	ENST00000371081		ChiTaRS3.1			BG992511	KIAA0319L	chr1	35997554	+	GNAS	chr20	57484447	-
intron-3CDS	ENST00000225792	ENST00000225792		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000225792	ENST00000450599		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000225792	ENST00000578804		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-intron	ENST00000225792	ENST00000580026		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000450599	ENST00000225792		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000450599	ENST00000450599		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000450599	ENST00000578804		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-intron	ENST00000450599	ENST00000580026		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000578804	ENST00000225792		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000578804	ENST00000450599		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000578804	ENST00000578804		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-intron	ENST00000578804	ENST00000580026		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000580026	ENST00000225792		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000580026	ENST00000450599		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-3CDS	ENST00000580026	ENST00000578804		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-intron	ENST00000580026	ENST00000580026		ChiTaRS3.1			CA314781	DDX5	chr17	62496092	+	DDX5	chr17	62496099	-
intron-intron	ENST00000445299	ENST00000371927		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000445299	ENST00000371926		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000445299	ENST00000461650		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000445299	ENST00000371924		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000445299	ENST00000371922		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000323460	ENST00000371927		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000323460	ENST00000371926		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000323460	ENST00000461650		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000323460	ENST00000371924		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000323460	ENST00000371922		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000419026	ENST00000371927		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000419026	ENST00000371926		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000419026	ENST00000461650		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000419026	ENST00000371924		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000419026	ENST00000371922		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000489744	ENST00000371927		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000489744	ENST00000371926		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000489744	ENST00000461650		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000489744	ENST00000371924		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000489744	ENST00000371922		ChiTaRS3.1			BE930751	SENP5	chr3	196654803	+	STAMBPL1	chr10	90700104	+
intron-intron	ENST00000599680	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599680	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000309877	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600911	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596822	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000601291	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377139	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000597198	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000593922	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000600022	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599223	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000596765	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000599144	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000598808	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000377135	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000313949		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371098		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371075		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371100		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371099		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371102		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000464624		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000306120		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371095		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371085		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000354359		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000265620		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000306090		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000442265	ENST00000371081		ChiTaRS3.1			CN315171	IRF3	chr19	50164305	-	GNAS	chr20	57478055	+
intron-intron	ENST00000375587	ENST00000375587		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375587	ENST00000375579		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375587	ENST00000375576		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375579	ENST00000375587		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375579	ENST00000375579		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375579	ENST00000375576		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375576	ENST00000375587		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375576	ENST00000375579		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-intron	ENST00000375576	ENST00000375576		ChiTaRS3.1			AI040141	CENPP	chr9	95146396	+	CENPP	chr9	95146446	-
intron-3UTR	ENST00000396193	ENST00000344995		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396193	ENST00000460943		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-intron	ENST00000396193	ENST00000398475		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396193	ENST00000275635		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396191	ENST00000344995		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396191	ENST00000460943		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-intron	ENST00000396191	ENST00000398475		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396191	ENST00000275635		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000321453	ENST00000344995		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000321453	ENST00000460943		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-intron	ENST00000321453	ENST00000398475		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000321453	ENST00000275635		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396184	ENST00000344995		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396184	ENST00000460943		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-intron	ENST00000396184	ENST00000398475		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396184	ENST00000275635		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000479980	ENST00000344995		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000479980	ENST00000460943		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-intron	ENST00000479980	ENST00000398475		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000479980	ENST00000275635		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396182	ENST00000344995		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396182	ENST00000460943		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-intron	ENST00000396182	ENST00000398475		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
intron-3UTR	ENST00000396182	ENST00000275635		ChiTaRS3.1			AV724221	PDE1C	chr7	32088724	-	LAT2	chr7	73643778	+
In-frame	ENST00000566786	ENST00000566786		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000566786	ENST00000438926		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000566786	ENST00000563236		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000566786	ENST00000262502		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
5CDS-intron	ENST00000566786	ENST00000563352		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000438926	ENST00000566786		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000438926	ENST00000438926		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000438926	ENST00000563236		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000438926	ENST00000262502		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
5CDS-intron	ENST00000438926	ENST00000563352		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000563236	ENST00000566786		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000563236	ENST00000438926		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000563236	ENST00000563236		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000563236	ENST00000262502		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
5CDS-intron	ENST00000563236	ENST00000563352		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000262502	ENST00000566786		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000262502	ENST00000438926		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000262502	ENST00000563236		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
In-frame	ENST00000262502	ENST00000262502		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
5CDS-intron	ENST00000262502	ENST00000563352		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
intron-3CDS	ENST00000563352	ENST00000566786		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
intron-3CDS	ENST00000563352	ENST00000438926		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
intron-3CDS	ENST00000563352	ENST00000563236		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
intron-3CDS	ENST00000563352	ENST00000262502		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
intron-intron	ENST00000563352	ENST00000563352		ChiTaRS3.1			BI764101	SLC12A3	chr16	56926878	-	SLC12A3	chr16	56926924	+
3UTR-3CDS	ENST00000446041	ENST00000446041		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
3UTR-3UTR	ENST00000446041	ENST00000393015		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
3UTR-3UTR	ENST00000446041	ENST00000507429		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
3UTR-3UTR	ENST00000446041	ENST00000324194		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
3UTR-3UTR	ENST00000446041	ENST00000453248		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3CDS	ENST00000393015	ENST00000446041		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000393015	ENST00000393015		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000393015	ENST00000507429		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000393015	ENST00000324194		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000393015	ENST00000453248		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3CDS	ENST00000507429	ENST00000446041		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000507429	ENST00000393015		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000507429	ENST00000507429		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000507429	ENST00000324194		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000507429	ENST00000453248		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3CDS	ENST00000324194	ENST00000446041		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000324194	ENST00000393015		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000324194	ENST00000507429		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000324194	ENST00000324194		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000324194	ENST00000453248		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3CDS	ENST00000453248	ENST00000446041		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000453248	ENST00000393015		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000453248	ENST00000507429		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000453248	ENST00000324194		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
intron-3UTR	ENST00000453248	ENST00000453248		ChiTaRS3.1			BM839671	SLC25A36	chr3	140696034	+	SLC25A36	chr3	140682047	+
5CDS-intron	ENST00000289371	ENST00000289371		ChiTaRS3.1			AW839731	EIF5B	chr2	99980154	-	EIF5B	chr2	99988193	-
3UTR-3UTR	ENST00000380909	ENST00000380909		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000380909	ENST00000303434		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000380909	ENST00000395827		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000380909	ENST00000395829		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000380909		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000303434		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000395827		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000395829		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000380909		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000303434		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000395827		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000395829		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000380909		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000303434		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000395827		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000395829		ChiTaRS3.1			W79111	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000229243	ENST00000319080		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000229243	ENST00000538698		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000229243	ENST00000377037		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000229243	ENST00000535996		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000414226	ENST00000319080		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000414226	ENST00000538698		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000414226	ENST00000377037		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000414226	ENST00000535996		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000542357	ENST00000319080		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000542357	ENST00000538698		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000542357	ENST00000377037		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000542357	ENST00000535996		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000536350	ENST00000319080		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-3UTR	ENST00000536350	ENST00000538698		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000536350	ENST00000377037		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
intron-intron	ENST00000536350	ENST00000535996		ChiTaRS3.1			BQ345731	ACRBP	chr12	6749321	+	MLXIP	chr12	122627629	-
3UTR-3UTR	ENST00000560869	ENST00000305596		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
3UTR-intron	ENST00000560869	ENST00000569466		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
3UTR-3UTR	ENST00000333007	ENST00000305596		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
3UTR-intron	ENST00000333007	ENST00000569466		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
intron-3UTR	ENST00000451723	ENST00000305596		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
intron-intron	ENST00000451723	ENST00000569466		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
intron-3UTR	ENST00000538222	ENST00000305596		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
intron-intron	ENST00000538222	ENST00000569466		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
3UTR-3UTR	ENST00000561217	ENST00000305596		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
3UTR-intron	ENST00000561217	ENST00000569466		ChiTaRS3.1			BF916711	TNFAIP2	chr14	103603513	-	CD2BP2	chr16	30362421	+
intron-3CDS	ENST00000005340	ENST00000253055		ChiTaRS3.1			BF527861	DVL2	chr17	7130524	-	MAP3K10	chr19	40698200	-
intron-3UTR	ENST00000005340	ENST00000593906		ChiTaRS3.1			BF527861	DVL2	chr17	7130524	-	MAP3K10	chr19	40698200	-
intron-3CDS	ENST00000575458	ENST00000253055		ChiTaRS3.1			BF527861	DVL2	chr17	7130524	-	MAP3K10	chr19	40698200	-
intron-3UTR	ENST00000575458	ENST00000593906		ChiTaRS3.1			BF527861	DVL2	chr17	7130524	-	MAP3K10	chr19	40698200	-
intron-3CDS	ENST00000574642	ENST00000253055		ChiTaRS3.1			BF527861	DVL2	chr17	7130524	-	MAP3K10	chr19	40698200	-
intron-3UTR	ENST00000574642	ENST00000593906		ChiTaRS3.1			BF527861	DVL2	chr17	7130524	-	MAP3K10	chr19	40698200	-
intron-intron	ENST00000382778	ENST00000382778		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000351808		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000319980		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000537103		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000461115		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000382778		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000351808		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000319980		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000537103		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000461115		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000382778		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000351808		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000319980		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000537103		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000461115		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000382778		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000351808		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000319980		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000537103		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000461115		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000382778		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000351808		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000319980		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000537103		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000461115		ChiTaRS3.1			AI621251	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-3CDS	ENST00000293328	ENST00000367821		ChiTaRS3.1			DA009551	STAT5B	chr17	40401037	+	TBX19	chr1	168269658	+
intron-intron	ENST00000293328	ENST00000465440		ChiTaRS3.1			DA009551	STAT5B	chr17	40401037	+	TBX19	chr1	168269658	+
intron-3UTR	ENST00000359204	ENST00000508628		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000359204	ENST00000456466		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000359204	ENST00000582970		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000359204	ENST00000319921		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000359204	ENST00000336301		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000359204	ENST00000427003		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000460752	ENST00000508628		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000460752	ENST00000456466		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000460752	ENST00000582970		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000460752	ENST00000319921		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000460752	ENST00000336301		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000460752	ENST00000427003		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000536233	ENST00000508628		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000536233	ENST00000456466		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000536233	ENST00000582970		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000536233	ENST00000319921		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000536233	ENST00000336301		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000536233	ENST00000427003		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000371430	ENST00000508628		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000371430	ENST00000456466		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000371430	ENST00000582970		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000371430	ENST00000319921		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000371430	ENST00000336301		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000371430	ENST00000427003		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000394100	ENST00000508628		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000394100	ENST00000456466		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000394100	ENST00000582970		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-intron	ENST00000394100	ENST00000319921		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000394100	ENST00000336301		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
intron-3UTR	ENST00000394100	ENST00000427003		ChiTaRS3.1			BE836631	FRA10AC1	chr10	95434588	-	RNF213	chr17	78368122	-
Frame-shit	ENST00000334005	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000334005	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000334005	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000334005	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000334005	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000334005	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000334005	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378473	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378473	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378473	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378473	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378473	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378473	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378473	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000278655	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000278655	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000278655	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000278655	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000278655	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000278655	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000278655	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000414679	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000414679	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000414679	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000414679	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000414679	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000414679	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000414679	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3CDS	ENST00000492632	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3CDS	ENST00000492632	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3CDS	ENST00000492632	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3CDS	ENST00000492632	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3UTR	ENST00000492632	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3UTR	ENST00000492632	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
3UTR-3UTR	ENST00000492632	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378501	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378501	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378501	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378501	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378501	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378501	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378501	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378493	ENST00000334005		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378493	ENST00000378473		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378493	ENST00000278655		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
Frame-shit	ENST00000378493	ENST00000414679		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378493	ENST00000492632		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378493	ENST00000378501		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
5CDS-3UTR	ENST00000378493	ENST00000378493		ChiTaRS3.1			BE926711	PLCB4	chr20	9417800	+	PLCB4	chr20	9388562	+
intron-intron	ENST00000355272	ENST00000322773		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000355272	ENST00000393344		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000355272	ENST00000476656		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000356926	ENST00000322773		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000356926	ENST00000393344		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000356926	ENST00000476656		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000350812	ENST00000322773		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000350812	ENST00000393344		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000350812	ENST00000476656		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000345016	ENST00000322773		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000345016	ENST00000393344		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000345016	ENST00000476656		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000590683	ENST00000322773		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000590683	ENST00000393344		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000590683	ENST00000476656		ChiTaRS3.1			AI870301	AP3D1	chr19	2114277	+	COL19A1	chr6	70733978	+
intron-intron	ENST00000264433	ENST00000604609		ChiTaRS3.1			BC030251	FNIP2	chr4	159793881	+	GDF15	chr19	18499921	+
intron-3UTR	ENST00000264433	ENST00000252809		ChiTaRS3.1			BC030251	FNIP2	chr4	159793881	+	GDF15	chr19	18499921	+
intron-intron	ENST00000379346	ENST00000604609		ChiTaRS3.1			BC030251	FNIP2	chr4	159793881	+	GDF15	chr19	18499921	+
intron-3UTR	ENST00000379346	ENST00000252809		ChiTaRS3.1			BC030251	FNIP2	chr4	159793881	+	GDF15	chr19	18499921	+
intron-intron	ENST00000505445	ENST00000604609		ChiTaRS3.1			BC030251	FNIP2	chr4	159793881	+	GDF15	chr19	18499921	+
intron-3UTR	ENST00000505445	ENST00000252809		ChiTaRS3.1			BC030251	FNIP2	chr4	159793881	+	GDF15	chr19	18499921	+
intron-intron	ENST00000379887	ENST00000379887		ChiTaRS3.1			BE000781	ARIH1	chr15	72780704	-	ARIH1	chr15	72782405	-
intron-intron	ENST00000379887	ENST00000562891		ChiTaRS3.1			BE000781	ARIH1	chr15	72780704	-	ARIH1	chr15	72782405	-
intron-intron	ENST00000562891	ENST00000379887		ChiTaRS3.1			BE000781	ARIH1	chr15	72780704	-	ARIH1	chr15	72782405	-
intron-intron	ENST00000562891	ENST00000562891		ChiTaRS3.1			BE000781	ARIH1	chr15	72780704	-	ARIH1	chr15	72782405	-
intron-intron	ENST00000545391	ENST00000376460		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000545391	ENST00000339416		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000545391	ENST00000448493		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000545391	ENST00000442173		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000545391	ENST00000461998		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000361171	ENST00000376460		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000361171	ENST00000339416		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000361171	ENST00000448493		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000361171	ENST00000442173		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000361171	ENST00000461998		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000436593	ENST00000376460		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000436593	ENST00000339416		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000436593	ENST00000448493		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000436593	ENST00000442173		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000436593	ENST00000461998		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000535766	ENST00000376460		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000535766	ENST00000339416		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000535766	ENST00000448493		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000535766	ENST00000442173		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000535766	ENST00000461998		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000485886	ENST00000376460		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000485886	ENST00000339416		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000485886	ENST00000448493		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000485886	ENST00000442173		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
3UTR-intron	ENST00000485886	ENST00000461998		ChiTaRS3.1			CA440881	MVB12B	chr9	129269169	-	DOCK9	chr13	99448712	+
intron-intron	ENST00000286713	ENST00000274569		ChiTaRS3.1			AW449111	STOM	chr9	124101405	+	PCYOX1L	chr5	148743963	-
intron-intron	ENST00000286713	ENST00000514349		ChiTaRS3.1			AW449111	STOM	chr9	124101405	+	PCYOX1L	chr5	148743963	-
intron-intron	ENST00000538954	ENST00000274569		ChiTaRS3.1			AW449111	STOM	chr9	124101405	+	PCYOX1L	chr5	148743963	-
intron-intron	ENST00000538954	ENST00000514349		ChiTaRS3.1			AW449111	STOM	chr9	124101405	+	PCYOX1L	chr5	148743963	-
intron-intron	ENST00000347359	ENST00000274569		ChiTaRS3.1			AW449111	STOM	chr9	124101405	+	PCYOX1L	chr5	148743963	-
intron-intron	ENST00000347359	ENST00000514349		ChiTaRS3.1			AW449111	STOM	chr9	124101405	+	PCYOX1L	chr5	148743963	-
3UTR-intron	ENST00000324685	ENST00000324685		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000324685	ENST00000402121		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000324685	ENST00000563683		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000324685	ENST00000357890		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000324685	ENST00000567365		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000402121	ENST00000324685		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000402121	ENST00000402121		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000402121	ENST00000563683		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000402121	ENST00000357890		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000402121	ENST00000567365		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000563683	ENST00000324685		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000563683	ENST00000402121		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000563683	ENST00000563683		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000563683	ENST00000357890		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000563683	ENST00000567365		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000357890	ENST00000324685		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000357890	ENST00000402121		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000357890	ENST00000563683		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000357890	ENST00000357890		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
3UTR-intron	ENST00000357890	ENST00000567365		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000567365	ENST00000324685		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000567365	ENST00000402121		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000567365	ENST00000563683		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000567365	ENST00000357890		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000567365	ENST00000567365		ChiTaRS3.1			BQ212221	RNF40	chr16	30786147	+	RNF40	chr16	30780487	+
intron-intron	ENST00000299381	ENST00000299381		ChiTaRS3.1			BE144861	ANAPC16	chr10	73779786	-	ANAPC16	chr10	73785166	-
intron-intron	ENST00000299381	ENST00000470481		ChiTaRS3.1			BE144861	ANAPC16	chr10	73779786	-	ANAPC16	chr10	73785166	-
intron-intron	ENST00000470481	ENST00000299381		ChiTaRS3.1			BE144861	ANAPC16	chr10	73779786	-	ANAPC16	chr10	73785166	-
intron-intron	ENST00000470481	ENST00000470481		ChiTaRS3.1			BE144861	ANAPC16	chr10	73779786	-	ANAPC16	chr10	73785166	-
intron-intron	ENST00000524630	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000524630	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529919	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399039	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000360682	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361796	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361391	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530094	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000428599	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000361332	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000527467	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000415361	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532245	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532463	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528232	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529986	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000531014	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000358694	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526772	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532787	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000533667	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529873	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000525902	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000529526	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532649	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000426142	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000532844	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000528621	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000399050	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526357	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000530748	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000534579	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000434513		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000361221		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000452522		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000375415		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000375420		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000469726		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000375408		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-intron	ENST00000526938	ENST00000167825		ChiTaRS3.1			AI868281	CTNND1	chr11	57510433	-	ARHGEF10L	chr1	18018627	-
intron-3CDS	ENST00000278823	ENST00000278823		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000278823	ENST00000524902		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000278823	ENST00000527204		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000524902	ENST00000278823		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000524902	ENST00000524902		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000524902	ENST00000527204		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000527204	ENST00000278823		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000527204	ENST00000524902		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000527204	ENST00000527204		ChiTaRS3.1			BF748421	MTA2	chr11	62362471	-	MTA2	chr11	62362822	+
intron-3CDS	ENST00000338086	ENST00000457685		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000338086	ENST00000593880		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000338086	ENST00000347606		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000319801	ENST00000457685		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000319801	ENST00000593880		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000319801	ENST00000347606		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000361078	ENST00000457685		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000361078	ENST00000593880		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000361078	ENST00000347606		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000536417	ENST00000457685		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000536417	ENST00000593880		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000536417	ENST00000347606		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000403432	ENST00000457685		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000403432	ENST00000593880		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000403432	ENST00000347606		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000420234	ENST00000457685		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000420234	ENST00000593880		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3CDS	ENST00000420234	ENST00000347606		ChiTaRS3.1			BE837491	PUM2	chr2	20494019	-	ZNF334	chr20	45130146	+
intron-3UTR	ENST00000272203	ENST00000376929		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-intron	ENST00000272203	ENST00000506690		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000272203	ENST00000389805		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000272203	ENST00000402874		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000272203	ENST00000510187		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000272203	ENST00000360718		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000414478	ENST00000376929		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-intron	ENST00000414478	ENST00000506690		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000414478	ENST00000389805		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000414478	ENST00000402874		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000414478	ENST00000510187		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000414478	ENST00000360718		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000485632	ENST00000376929		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-intron	ENST00000485632	ENST00000506690		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000485632	ENST00000389805		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000485632	ENST00000402874		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000485632	ENST00000510187		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3UTR	ENST00000485632	ENST00000360718		ChiTaRS3.1			BF369651	PLEKHA6	chr1	204191728	+	SQSTM1	chr5	179263991	+
intron-3CDS	ENST00000410080	ENST00000410080		ChiTaRS3.1			BF336471	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
intron-intron	ENST00000410080	ENST00000486100		ChiTaRS3.1			BF336471	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
intron-3CDS	ENST00000486100	ENST00000410080		ChiTaRS3.1			BF336471	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
intron-intron	ENST00000486100	ENST00000486100		ChiTaRS3.1			BF336471	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
5CDS-intron	ENST00000308580	ENST00000361189		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
5CDS-intron	ENST00000308580	ENST00000361557		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
5CDS-intron	ENST00000308580	ENST00000511624		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
5CDS-intron	ENST00000544199	ENST00000361189		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
5CDS-intron	ENST00000544199	ENST00000361557		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
5CDS-intron	ENST00000544199	ENST00000511624		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
intron-intron	ENST00000561136	ENST00000361189		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
intron-intron	ENST00000561136	ENST00000361557		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
intron-intron	ENST00000561136	ENST00000511624		ChiTaRS3.1			AW818351	TMOD3	chr15	52186094	-	PJA2	chr5	108704238	-
intron-intron	ENST00000397843	ENST00000592179		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000397843	ENST00000322980		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000397843	ENST00000585908		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000397843	ENST00000284207		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000397843	ENST00000586511		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000356641	ENST00000592179		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000356641	ENST00000322980		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000356641	ENST00000585908		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000356641	ENST00000284207		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000356641	ENST00000586511		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000532993	ENST00000592179		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000532993	ENST00000322980		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000532993	ENST00000585908		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000532993	ENST00000284207		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-intron	ENST00000532993	ENST00000586511		ChiTaRS3.1			AW898521	ARHGEF12	chr11	120207755	+	ANKRD29	chr18	21187562	+
intron-3UTR	ENST00000409613	ENST00000373166		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
intron-5UTR	ENST00000409613	ENST00000462715		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
intron-intron	ENST00000409613	ENST00000373163		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
intron-intron	ENST00000409613	ENST00000373162		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
intron-intron	ENST00000409613	ENST00000373159		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-3UTR	ENST00000264059	ENST00000373166		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-5UTR	ENST00000264059	ENST00000462715		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000264059	ENST00000373163		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000264059	ENST00000373162		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000264059	ENST00000373159		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-3UTR	ENST00000409708	ENST00000373166		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-5UTR	ENST00000409708	ENST00000462715		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000409708	ENST00000373163		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000409708	ENST00000373162		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000409708	ENST00000373159		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-3UTR	ENST00000410095	ENST00000373166		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-5UTR	ENST00000410095	ENST00000462715		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000410095	ENST00000373163		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000410095	ENST00000373162		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
3UTR-intron	ENST00000410095	ENST00000373159		ChiTaRS3.1			AI880161	EFHD1	chr2	233547298	-	TRAPPC3	chr1	36602318	+
5CDS-intron	ENST00000484457	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000484457	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000484457	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000484457	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000484457	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000484457	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000484457	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000538892	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
3UTR-intron	ENST00000283627	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5CDS-intron	ENST00000538181	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000446237	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000507198	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000484457		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000538892		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000283627		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000538181		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000446237		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000507198		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
5UTR-intron	ENST00000542085	ENST00000542085		ChiTaRS3.1			AA558641	FBXL2	chr3	33414815	+	FBXL2	chr3	33415197	-
intron-intron	ENST00000264930	ENST00000384994		ChiTaRS3.1			BQ355091	SLC12A7	chr5	1052055	-	NEAT1	chr11	65192378	+
intron-3CDS	ENST00000434013	ENST00000434013		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000434013	ENST00000541064		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000434013	ENST00000555619		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000434013	ENST00000238633		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000434013	ENST00000557510		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000541064	ENST00000434013		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000541064	ENST00000541064		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000541064	ENST00000555619		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000541064	ENST00000238633		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000541064	ENST00000557510		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000555619	ENST00000434013		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000555619	ENST00000541064		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000555619	ENST00000555619		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000555619	ENST00000238633		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000555619	ENST00000557510		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000238633	ENST00000434013		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000238633	ENST00000541064		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000238633	ENST00000555619		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000238633	ENST00000238633		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000238633	ENST00000557510		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000557510	ENST00000434013		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000557510	ENST00000541064		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000557510	ENST00000555619		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000557510	ENST00000238633		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-3CDS	ENST00000557510	ENST00000557510		ChiTaRS3.1			BI018781	NPC2	chr14	74946785	-	NPC2	chr14	74951170	+
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-3UTR	ENST00000448637	ENST00000312675		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-3UTR	ENST00000448637	ENST00000543006		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-3UTR	ENST00000312675	ENST00000312675		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-3UTR	ENST00000312675	ENST00000543006		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-3UTR	ENST00000543006	ENST00000312675		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-3UTR	ENST00000543006	ENST00000543006		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-3UTR	ENST00000471917	ENST00000312675		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-3UTR	ENST00000471917	ENST00000543006		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			BP420721	LPP	chr3	188598657	+	LPP	chr3	188598075	+
3UTR-intron	ENST00000406925	ENST00000439123		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000406925	ENST00000508776		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000406925	ENST00000296464		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000406925	ENST00000505726		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-3UTR	ENST00000406925	ENST00000515262		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
intron-intron	ENST00000498605	ENST00000439123		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
intron-intron	ENST00000498605	ENST00000508776		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
intron-intron	ENST00000498605	ENST00000296464		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
intron-intron	ENST00000498605	ENST00000505726		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
intron-3UTR	ENST00000498605	ENST00000515262		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000442995	ENST00000439123		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000442995	ENST00000508776		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000442995	ENST00000296464		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000442995	ENST00000505726		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-3UTR	ENST00000442995	ENST00000515262		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000458412	ENST00000439123		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000458412	ENST00000508776		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000458412	ENST00000296464		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-intron	ENST00000458412	ENST00000505726		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
3UTR-3UTR	ENST00000458412	ENST00000515262		ChiTaRS3.1			BF700151	HYPK	chr15	44094039	+	HSPA4L	chr4	128734354	-
intron-3CDS	ENST00000482199	ENST00000394947		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000482199	ENST00000360439		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000482199	ENST00000394949		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000482199	ENST00000567289		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000474120	ENST00000394947		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000474120	ENST00000360439		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000474120	ENST00000394949		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000474120	ENST00000567289		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000442303	ENST00000394947		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000442303	ENST00000360439		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000442303	ENST00000394949		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000442303	ENST00000567289		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000223136	ENST00000394947		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000223136	ENST00000360439		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000223136	ENST00000394949		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-3CDS	ENST00000223136	ENST00000567289		ChiTaRS3.1			AW866901	FIS1	chr7	100887158	+	SIN3A	chr15	75722655	+
intron-intron	ENST00000265965	ENST00000265965		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000265965	ENST00000528200		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000265965	ENST00000532265		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000265965	ENST00000532212		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000528200	ENST00000265965		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000528200	ENST00000528200		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000528200	ENST00000532265		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000528200	ENST00000532212		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532265	ENST00000265965		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532265	ENST00000528200		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532265	ENST00000532265		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532265	ENST00000532212		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532212	ENST00000265965		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532212	ENST00000528200		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532212	ENST00000532265		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
intron-intron	ENST00000532212	ENST00000532212		ChiTaRS3.1			CV357741	SERGEF	chr11	17832568	-	SERGEF	chr11	17833657	-
Frame-shit	ENST00000420986	ENST00000420986		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
Frame-shit	ENST00000420986	ENST00000532163		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
Frame-shit	ENST00000420986	ENST00000280352		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
Frame-shit	ENST00000420986	ENST00000530104		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
Frame-shit	ENST00000420986	ENST00000393047		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000532163	ENST00000420986		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000532163	ENST00000532163		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000532163	ENST00000280352		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000532163	ENST00000530104		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000532163	ENST00000393047		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000280352	ENST00000420986		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000280352	ENST00000532163		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000280352	ENST00000280352		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000280352	ENST00000530104		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000280352	ENST00000393047		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
intron-3CDS	ENST00000530104	ENST00000420986		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
intron-3CDS	ENST00000530104	ENST00000532163		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
intron-3CDS	ENST00000530104	ENST00000280352		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
intron-3CDS	ENST00000530104	ENST00000530104		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
intron-3CDS	ENST00000530104	ENST00000393047		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000393047	ENST00000420986		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000393047	ENST00000532163		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000393047	ENST00000280352		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000393047	ENST00000530104		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
In-frame	ENST00000393047	ENST00000393047		ChiTaRS3.1			BM467811	C11orf57	chr11	111953574	+	C11orf57	chr11	111949007	+
intron-intron	ENST00000436319	ENST00000367090		ChiTaRS3.1			AY203961	COL24A1	chr1	86351677	+	TMEM181	chr6	158971044	+
intron-intron	ENST00000370571	ENST00000367090		ChiTaRS3.1			AY203961	COL24A1	chr1	86351677	+	TMEM181	chr6	158971044	+
intron-intron	ENST00000485434	ENST00000367090		ChiTaRS3.1			AY203961	COL24A1	chr1	86351677	+	TMEM181	chr6	158971044	+
3UTR-3UTR	ENST00000163416	ENST00000163416		ChiTaRS3.1			CN271521	GOLGA5	chr14	93305917	-	GOLGA5	chr14	93305926	+
3UTR-3UTR	ENST00000163416	ENST00000355976		ChiTaRS3.1			CN271521	GOLGA5	chr14	93305917	-	GOLGA5	chr14	93305926	+
3UTR-3UTR	ENST00000355976	ENST00000163416		ChiTaRS3.1			CN271521	GOLGA5	chr14	93305917	-	GOLGA5	chr14	93305926	+
3UTR-3UTR	ENST00000355976	ENST00000355976		ChiTaRS3.1			CN271521	GOLGA5	chr14	93305917	-	GOLGA5	chr14	93305926	+
intron-intron	ENST00000373736	ENST00000254528		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000373736	ENST00000308080		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000263693	ENST00000254528		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000263693	ENST00000308080		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000528449	ENST00000254528		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000528449	ENST00000308080		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000398657	ENST00000254528		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000398657	ENST00000308080		ChiTaRS3.1			AW835691	NKAIN1	chr1	31658964	+	EMILIN2	chr18	2870590	-
intron-intron	ENST00000262030	ENST00000416426		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000262030	ENST00000284073		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000262030	ENST00000322684		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000262030	ENST00000442934		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000262030	ENST00000579180		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000262030	ENST00000579505		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000552919	ENST00000416426		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000552919	ENST00000284073		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000552919	ENST00000322684		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000552919	ENST00000442934		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000552919	ENST00000579180		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000552919	ENST00000579505		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000550162	ENST00000416426		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000550162	ENST00000284073		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000550162	ENST00000322684		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000550162	ENST00000442934		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000550162	ENST00000579180		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
intron-intron	ENST00000550162	ENST00000579505		ChiTaRS3.1			BE676351	ATP5B	chr12	57032072	+	MSI2	chr17	55723686	-
3UTR-3UTR	ENST00000561234	ENST00000561234		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000561234	ENST00000416165		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000561234	ENST00000560846		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000561234		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000416165		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000560846		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000561234		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000416165		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000560846		ChiTaRS3.1			R13921	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
intron-intron	ENST00000326621	ENST00000326621		ChiTaRS3.1			AW843261	VSIG2	chr11	124620476	+	VSIG2	chr11	124620265	-
intron-intron	ENST00000326621	ENST00000403470		ChiTaRS3.1			AW843261	VSIG2	chr11	124620476	+	VSIG2	chr11	124620265	-
intron-intron	ENST00000403470	ENST00000326621		ChiTaRS3.1			AW843261	VSIG2	chr11	124620476	+	VSIG2	chr11	124620265	-
intron-intron	ENST00000403470	ENST00000403470		ChiTaRS3.1			AW843261	VSIG2	chr11	124620476	+	VSIG2	chr11	124620265	-
intron-3UTR	ENST00000418115	ENST00000557457		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000418115	ENST00000333244		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000454011	ENST00000557457		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000454011	ENST00000333244		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000422781	ENST00000557457		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000422781	ENST00000333244		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000265538	ENST00000557457		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000265538	ENST00000333244		ChiTaRS3.1			BQ354371	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-5UTR	ENST00000376851	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376851	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000376851	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376851	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376851	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376851	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376851	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000310157	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000310157	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000310157	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000310157	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000310157	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000310157	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000310157	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000391808	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000391808	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000391808	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000391808	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000391808	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000391808	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000391808	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000456750	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000456750	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000456750	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000456750	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000456750	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000456750	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000456750	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000376853	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376853	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000376853	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376853	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376853	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376853	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000376853	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000594641	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000594641	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000594641	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000594641	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000594641	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000594641	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000594641	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000424910	ENST00000376851		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000424910	ENST00000310157		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-5UTR	ENST00000424910	ENST00000391808		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000424910	ENST00000456750		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000424910	ENST00000376853		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000424910	ENST00000594641		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
intron-intron	ENST00000424910	ENST00000424910		ChiTaRS3.1			BQ361291	KLK6	chr19	51466577	+	KLK6	chr19	51472017	-
5CDS-intron	ENST00000344691	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000344691	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000344691	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000325074	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000325074	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000325074	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000437180	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000437180	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000437180	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000300305	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000300305	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000300305	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000399240	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000399240	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000399240	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000486278	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000486278	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000486278	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
intron-intron	ENST00000494829	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
intron-intron	ENST00000494829	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
intron-intron	ENST00000494829	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000358356	ENST00000301295		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000358356	ENST00000346986		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
5CDS-intron	ENST00000358356	ENST00000587891		ChiTaRS3.1			AY004251	RUNX1	chr21	36231770	-	NLRP4	chr19	56397289	-
intron-5UTR	ENST00000435607	ENST00000435607		ChiTaRS3.1			CD608181	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000435607	ENST00000578147		ChiTaRS3.1			CD608181	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000435607		ChiTaRS3.1			CD608181	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000578147		ChiTaRS3.1			CD608181	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-intron	ENST00000344663	ENST00000344663		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000344663	ENST00000591806		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000344663	ENST00000311401		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000344663	ENST00000415183		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000344663	ENST00000591453		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591806	ENST00000344663		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591806	ENST00000591806		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591806	ENST00000311401		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591806	ENST00000415183		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591806	ENST00000591453		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000311401	ENST00000344663		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000311401	ENST00000591806		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000311401	ENST00000311401		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000311401	ENST00000415183		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000311401	ENST00000591453		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000415183	ENST00000344663		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000415183	ENST00000591806		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000415183	ENST00000311401		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000415183	ENST00000415183		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000415183	ENST00000591453		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591453	ENST00000344663		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591453	ENST00000591806		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591453	ENST00000311401		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591453	ENST00000415183		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-intron	ENST00000591453	ENST00000591453		ChiTaRS3.1			BX508411	MUM1	chr19	1369410	-	MUM1	chr19	1369042	+
intron-5UTR	ENST00000467129	ENST00000467129		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000467129	ENST00000381808		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000467129	ENST00000381812		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000467129	ENST00000339987		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000467129	ENST00000360779		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-5UTR	ENST00000381808	ENST00000467129		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381808	ENST00000381808		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381808	ENST00000381812		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381808	ENST00000339987		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381808	ENST00000360779		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-5UTR	ENST00000381812	ENST00000467129		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381812	ENST00000381808		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381812	ENST00000381812		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381812	ENST00000339987		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000381812	ENST00000360779		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-5UTR	ENST00000339987	ENST00000467129		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000339987	ENST00000381808		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000339987	ENST00000381812		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000339987	ENST00000339987		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000339987	ENST00000360779		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-5UTR	ENST00000360779	ENST00000467129		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000360779	ENST00000381808		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000360779	ENST00000381812		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000360779	ENST00000339987		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000360779	ENST00000360779		ChiTaRS3.1			BE818561	SDCBP2	chr20	1290876	+	SDCBP2	chr20	1290791	-
intron-3UTR	ENST00000544484	ENST00000544484		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544484	ENST00000357008		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544484	ENST00000309577		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544484	ENST00000544040		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-intron	ENST00000544484	ENST00000540960		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000357008	ENST00000544484		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000357008	ENST00000357008		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000357008	ENST00000309577		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000357008	ENST00000544040		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-intron	ENST00000357008	ENST00000540960		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000309577	ENST00000544484		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000309577	ENST00000357008		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000309577	ENST00000309577		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000309577	ENST00000544040		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-intron	ENST00000309577	ENST00000540960		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544040	ENST00000544484		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544040	ENST00000357008		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544040	ENST00000309577		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000544040	ENST00000544040		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-intron	ENST00000544040	ENST00000540960		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000540960	ENST00000544484		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000540960	ENST00000357008		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000540960	ENST00000309577		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-3UTR	ENST00000540960	ENST00000544040		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-intron	ENST00000540960	ENST00000540960		ChiTaRS3.1			AI339871	CHD4	chr12	6690246	+	CHD4	chr12	6679755	+
intron-intron	ENST00000543482	ENST00000526180		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000533280		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000525823		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000533475		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000527950		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000227251		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000531198		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000543482	ENST00000533971		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000526180		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000533280		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000525823		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000533475		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000527950		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000227251		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000531198		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000331706	ENST00000533971		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000526180		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000533280		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000525823		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000533475		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000527950		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000227251		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000531198		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000451018	ENST00000533971		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000526180		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000533280		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000525823		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000533475		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000527950		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000227251		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000531198		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000357742	ENST00000533971		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000526180		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000533280		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000525823		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000533475		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000527950		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000227251		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000531198		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000557742	ENST00000533971		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000526180		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000533280		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000525823		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000533475		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000527950		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000227251		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000531198		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
intron-intron	ENST00000449432	ENST00000533971		ChiTaRS3.1			AK130291	MCTP2	chr15	94856827	+	CRYAB	chr11	111780133	+
3UTR-intron	ENST00000329654	ENST00000329654		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000329654	ENST00000371049		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000329654	ENST00000423207		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000329654	ENST00000371048		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000329654	ENST00000371045		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000329654	ENST00000480109		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371049	ENST00000329654		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371049	ENST00000371049		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371049	ENST00000423207		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371049	ENST00000371048		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371049	ENST00000371045		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371049	ENST00000480109		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000423207	ENST00000329654		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000423207	ENST00000371049		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000423207	ENST00000423207		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000423207	ENST00000371048		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000423207	ENST00000371045		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000423207	ENST00000480109		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371048	ENST00000329654		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371048	ENST00000371049		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371048	ENST00000423207		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371048	ENST00000371048		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371048	ENST00000371045		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000371048	ENST00000480109		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000371045	ENST00000329654		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000371045	ENST00000371049		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000371045	ENST00000423207		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000371045	ENST00000371048		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000371045	ENST00000371045		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
3UTR-intron	ENST00000371045	ENST00000480109		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000480109	ENST00000329654		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000480109	ENST00000371049		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000480109	ENST00000423207		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000480109	ENST00000371048		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000480109	ENST00000371045		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-intron	ENST00000480109	ENST00000480109		ChiTaRS3.1			L20971	PDE4B	chr1	66839611	+	PDE4B	chr1	66797687	+
intron-3CDS	ENST00000268251	ENST00000303254		ChiTaRS3.1			CV312141	ABAT	chr16	8814768	-	TEX37	chr2	88828611	+
intron-3CDS	ENST00000396600	ENST00000303254		ChiTaRS3.1			CV312141	ABAT	chr16	8814768	-	TEX37	chr2	88828611	+
intron-3CDS	ENST00000563215	ENST00000303254		ChiTaRS3.1			CV312141	ABAT	chr16	8814768	-	TEX37	chr2	88828611	+
intron-3CDS	ENST00000567812	ENST00000303254		ChiTaRS3.1			CV312141	ABAT	chr16	8814768	-	TEX37	chr2	88828611	+
5UTR-3CDS	ENST00000425191	ENST00000303254		ChiTaRS3.1			CV312141	ABAT	chr16	8814768	-	TEX37	chr2	88828611	+
5UTR-3CDS	ENST00000569156	ENST00000303254		ChiTaRS3.1			CV312141	ABAT	chr16	8814768	-	TEX37	chr2	88828611	+
intron-3CDS	ENST00000264051	ENST00000264051		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000264051	ENST00000373552		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000264051	ENST00000539537		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000264051	ENST00000409079		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000373552	ENST00000264051		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000373552	ENST00000373552		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000373552	ENST00000539537		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000373552	ENST00000409079		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000539537	ENST00000264051		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000539537	ENST00000373552		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000539537	ENST00000539537		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000539537	ENST00000409079		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000409079	ENST00000264051		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3CDS	ENST00000409079	ENST00000373552		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000409079	ENST00000539537		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-intron	ENST00000409079	ENST00000409079		ChiTaRS3.1			DA153061	NGEF	chr2	233744257	-	NGEF	chr2	233791807	-
intron-3UTR	ENST00000295874	ENST00000320610		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
intron-3UTR	ENST00000295874	ENST00000253159		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
intron-intron	ENST00000295874	ENST00000583095		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
intron-3UTR	ENST00000474889	ENST00000320610		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
intron-3UTR	ENST00000474889	ENST00000253159		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
intron-intron	ENST00000474889	ENST00000583095		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
3UTR-3UTR	ENST00000495879	ENST00000320610		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
3UTR-3UTR	ENST00000495879	ENST00000253159		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
3UTR-intron	ENST00000495879	ENST00000583095		ChiTaRS3.1			BI052221	PTPRG	chr3	61756318	-	ZNF236	chr18	74681364	+
5CDS-3UTR	ENST00000375114	ENST00000375114		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
5CDS-3UTR	ENST00000375114	ENST00000246194		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
5CDS-intron	ENST00000375114	ENST00000493399		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
5CDS-3UTR	ENST00000246194	ENST00000375114		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
5CDS-3UTR	ENST00000246194	ENST00000246194		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
5CDS-intron	ENST00000246194	ENST00000493399		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
intron-3UTR	ENST00000493399	ENST00000375114		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
intron-3UTR	ENST00000493399	ENST00000246194		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
intron-intron	ENST00000493399	ENST00000493399		ChiTaRS3.1			BF091181	RALY	chr20	32664925	-	RALY	chr20	32667831	-
intron-intron	ENST00000370557	ENST00000370557		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000327569		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000361648		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000460773		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000370543		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000359686		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000370557		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000327569		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000361648		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000460773		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000370543		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000359686		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000370557		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000327569		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000361648		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000460773		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000370543		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000359686		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000370557		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000327569		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000361648		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000460773		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000370543		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000359686		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000370557		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000327569		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000361648		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000460773		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000370543		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000359686		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000370557		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000327569		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000361648		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000460773		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000370543		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000359686		ChiTaRS3.1			BE082951	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
3UTR-3CDS	ENST00000367042	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000367042	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000367042	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000367042	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000354848	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000354848	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000354848	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000354848	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000441839	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000441839	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000441839	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000441839	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000322875	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000322875	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000322875	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000322875	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000367041	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000367041	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000367041	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000367041	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000358170	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000358170	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000358170	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000358170	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000322918	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000322918	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000322918	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000322918	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000361067	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000361067	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000361067	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000361067	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000367047	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000367047	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000367047	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000367047	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000357714	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000357714	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000357714	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000357714	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000469535	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000469535	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000469535	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000469535	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000360212	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-3CDS	ENST00000360212	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000360212	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
3UTR-intron	ENST00000360212	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
intron-3CDS	ENST00000480003	ENST00000323688		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
intron-3CDS	ENST00000480003	ENST00000529010		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
intron-intron	ENST00000480003	ENST00000458064		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
intron-intron	ENST00000480003	ENST00000532240		ChiTaRS3.1			BF991091	CD46	chr1	207967509	-	NUCB2	chr11	17336989	+
5UTR-intron	ENST00000367034	ENST00000529397		ChiTaRS3.1			AV656211	MRPL18	chr6	160211572	+	TBCEL	chr11	120907666	+
5UTR-intron	ENST00000367034	ENST00000422003		ChiTaRS3.1			AV656211	MRPL18	chr6	160211572	+	TBCEL	chr11	120907666	+
3UTR-intron	ENST00000480842	ENST00000529397		ChiTaRS3.1			AV656211	MRPL18	chr6	160211572	+	TBCEL	chr11	120907666	+
3UTR-intron	ENST00000480842	ENST00000422003		ChiTaRS3.1			AV656211	MRPL18	chr6	160211572	+	TBCEL	chr11	120907666	+
3UTR-3UTR	ENST00000442123	ENST00000442123		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
3UTR-3UTR	ENST00000442123	ENST00000354586		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
3UTR-intron	ENST00000442123	ENST00000556861		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
3UTR-3UTR	ENST00000354586	ENST00000442123		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
3UTR-3UTR	ENST00000354586	ENST00000354586		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
3UTR-intron	ENST00000354586	ENST00000556861		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
intron-3UTR	ENST00000556861	ENST00000442123		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
intron-3UTR	ENST00000556861	ENST00000354586		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
intron-intron	ENST00000556861	ENST00000556861		ChiTaRS3.1			AW275131	STYX	chr14	53238627	-	STYX	chr14	53239423	-
intron-intron	ENST00000453258	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000453258	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000453258	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000453258	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000543964	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000543964	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000543964	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000543964	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371207	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371207	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371207	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000371207	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371203	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371203	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371203	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000371203	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000539125	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000539125	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000539125	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000539125	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371205	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371205	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000371205	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000371205	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000490659	ENST00000311528		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000490659	ENST00000567815		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-intron	ENST00000490659	ENST00000452368		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000490659	ENST00000393099		ChiTaRS3.1			BE796741	ENTPD1	chr10	97485346	+	RPL13	chr16	89627137	+
intron-5UTR	ENST00000372842	ENST00000372842		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372842	ENST00000372838		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372842	ENST00000493788		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372842		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372838		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372838	ENST00000493788		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372842		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372838		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000493788	ENST00000493788		ChiTaRS3.1			BQ690871	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
Frame-shit	ENST00000461783	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000461783	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
intron-3CDS	ENST00000449545	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
intron-intron	ENST00000449545	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000367174	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000367174	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000456144	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000456144	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000318981	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000318981	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000360366	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000360366	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
In-frame	ENST00000529824	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000529824	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000456877	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000456877	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
In-frame	ENST00000528391	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000528391	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
In-frame	ENST00000275246	ENST00000367166		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000275246	ENST00000480390		ChiTaRS3.1			BM993771	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
3UTR-3CDS	ENST00000361505	ENST00000265062		ChiTaRS3.1			BQ315891	PNP	chr14	20944895	-	RAB7A	chr3	128516859	+
3UTR-3CDS	ENST00000361505	ENST00000482525		ChiTaRS3.1			BQ315891	PNP	chr14	20944895	-	RAB7A	chr3	128516859	+
3UTR-3CDS	ENST00000361505	ENST00000485280		ChiTaRS3.1			BQ315891	PNP	chr14	20944895	-	RAB7A	chr3	128516859	+
intron-intron	ENST00000537992	ENST00000537992		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
intron-3UTR	ENST00000537992	ENST00000222573		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
intron-intron	ENST00000537992	ENST00000460204		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
3UTR-intron	ENST00000222573	ENST00000537992		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
3UTR-3UTR	ENST00000222573	ENST00000222573		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
3UTR-intron	ENST00000222573	ENST00000460204		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
intron-intron	ENST00000460204	ENST00000537992		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
intron-3UTR	ENST00000460204	ENST00000222573		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
intron-intron	ENST00000460204	ENST00000460204		ChiTaRS3.1			BE774581	ITGB8	chr7	20454770	+	ITGB8	chr7	20454610	-
Frame-shit	ENST00000322861	ENST00000357685		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
Frame-shit	ENST00000322861	ENST00000393032		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
Frame-shit	ENST00000322861	ENST00000361053		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
Frame-shit	ENST00000322861	ENST00000438022		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
Frame-shit	ENST00000322861	ENST00000526088		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
Frame-shit	ENST00000322861	ENST00000532593		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
Frame-shit	ENST00000322861	ENST00000531169		ChiTaRS3.1			F01021	MYLPF	chr16	30389178	+	BCO2	chr11	112064380	-
intron-3CDS	ENST00000346145	ENST00000346145		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000346145	ENST00000349607		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000346145	ENST00000463781		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000346145	ENST00000475231		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-intron	ENST00000346145	ENST00000478685		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000349607	ENST00000346145		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000349607	ENST00000349607		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000349607	ENST00000463781		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000349607	ENST00000475231		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-intron	ENST00000349607	ENST00000478685		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000463781	ENST00000346145		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000463781	ENST00000349607		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000463781	ENST00000463781		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000463781	ENST00000475231		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-intron	ENST00000463781	ENST00000478685		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000475231	ENST00000346145		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000475231	ENST00000349607		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000475231	ENST00000463781		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000475231	ENST00000475231		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-intron	ENST00000475231	ENST00000478685		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000478685	ENST00000346145		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000478685	ENST00000349607		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000478685	ENST00000463781		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000478685	ENST00000475231		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-intron	ENST00000478685	ENST00000478685		ChiTaRS3.1			DA435621	MUC4	chr3	195477236	-	MUC4	chr3	195489124	-
intron-3CDS	ENST00000521861	ENST00000521861		ChiTaRS3.1			AW372241	EIF3H	chr8	117671093	-	EIF3H	chr8	117669490	+
intron-3CDS	ENST00000521861	ENST00000276682		ChiTaRS3.1			AW372241	EIF3H	chr8	117671093	-	EIF3H	chr8	117669490	+
intron-3CDS	ENST00000276682	ENST00000521861		ChiTaRS3.1			AW372241	EIF3H	chr8	117671093	-	EIF3H	chr8	117669490	+
intron-3CDS	ENST00000276682	ENST00000276682		ChiTaRS3.1			AW372241	EIF3H	chr8	117671093	-	EIF3H	chr8	117669490	+
intron-intron	ENST00000396516	ENST00000334005		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000396516	ENST00000378473		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000396516	ENST00000278655		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000396516	ENST00000414679		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000396516	ENST00000492632		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000396516	ENST00000378501		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000396516	ENST00000378493		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000334005		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000378473		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000278655		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000414679		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000492632		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000378501		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000355758	ENST00000378493		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000334005		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000378473		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000278655		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000414679		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000492632		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000378501		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575984	ENST00000378493		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000334005		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000378473		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000278655		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000414679		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000492632		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000378501		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
intron-intron	ENST00000575170	ENST00000378493		ChiTaRS3.1			DA775941	ZC3H7A	chr16	11854972	-	PLCB4	chr20	9351444	+
Frame-shit	ENST00000513610	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000513610	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000513610	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000513610	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000513610	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000513610	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000513610	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-3CDS	ENST00000507288	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-intron	ENST00000507288	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-intron	ENST00000507288	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000507288	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000507288	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000507288	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000507288	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
Frame-shit	ENST00000274203	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000274203	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000274203	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000274203	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000274203	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000274203	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000274203	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
Frame-shit	ENST00000515803	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000515803	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000515803	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000515803	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000515803	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000515803	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000515803	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
Frame-shit	ENST00000427430	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000427430	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000427430	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000427430	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000427430	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000427430	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000427430	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
Frame-shit	ENST00000505695	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000505695	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-intron	ENST00000505695	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000505695	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000505695	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000505695	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
5CDS-5UTR	ENST00000505695	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-3CDS	ENST00000512061	ENST00000513610		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-intron	ENST00000512061	ENST00000507288		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-intron	ENST00000512061	ENST00000274203		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000512061	ENST00000515803		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000512061	ENST00000427430		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000512061	ENST00000505695		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-5UTR	ENST00000512061	ENST00000512061		ChiTaRS3.1			AK025921	MYO10	chr5	16694480	-	MYO10	chr5	16711354	-
intron-intron	ENST00000487861	ENST00000487861		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487861	ENST00000471583		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487861	ENST00000487270		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487861	ENST00000488612		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487861	ENST00000390683		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487861	ENST00000469165		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000471583	ENST00000487861		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000471583	ENST00000471583		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000471583	ENST00000487270		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000471583	ENST00000488612		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000471583	ENST00000390683		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000471583	ENST00000469165		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487270	ENST00000487861		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487270	ENST00000471583		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487270	ENST00000487270		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487270	ENST00000488612		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487270	ENST00000390683		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000487270	ENST00000469165		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000488612	ENST00000487861		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000488612	ENST00000471583		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000488612	ENST00000487270		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000488612	ENST00000488612		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000488612	ENST00000390683		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000488612	ENST00000469165		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000390683	ENST00000487861		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000390683	ENST00000471583		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000390683	ENST00000487270		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000390683	ENST00000488612		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000390683	ENST00000390683		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000390683	ENST00000469165		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000469165	ENST00000487861		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000469165	ENST00000471583		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000469165	ENST00000487270		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000469165	ENST00000488612		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000469165	ENST00000390683		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
intron-intron	ENST00000469165	ENST00000469165		ChiTaRS3.1			AL040421	RAD51B	chr14	68358891	-	RAD51B	chr14	68358983	+
3UTR-3UTR	ENST00000394243	ENST00000394243		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000394243	ENST00000522122		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000394243	ENST00000518872		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000394243	ENST00000307662		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000394243	ENST00000519664		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000522122	ENST00000394243		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000522122	ENST00000522122		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000522122	ENST00000518872		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000522122	ENST00000307662		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000522122	ENST00000519664		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-3UTR	ENST00000518872	ENST00000394243		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-3UTR	ENST00000518872	ENST00000522122		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-intron	ENST00000518872	ENST00000518872		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-intron	ENST00000518872	ENST00000307662		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-3UTR	ENST00000518872	ENST00000519664		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-3UTR	ENST00000307662	ENST00000394243		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-3UTR	ENST00000307662	ENST00000522122		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-intron	ENST00000307662	ENST00000518872		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-intron	ENST00000307662	ENST00000307662		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
intron-3UTR	ENST00000307662	ENST00000519664		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000519664	ENST00000394243		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000519664	ENST00000522122		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000519664	ENST00000518872		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000519664	ENST00000307662		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-3UTR	ENST00000519664	ENST00000519664		ChiTaRS3.1			BE466511	SYNPO	chr5	150031783	-	SYNPO	chr5	150031686	+
3UTR-intron	ENST00000534336	ENST00000419617		ChiTaRS3.1			AW864171	MALAT1	chr11	65266563	-	STK3	chr8	99692441	-
3UTR-intron	ENST00000534336	ENST00000523601		ChiTaRS3.1			AW864171	MALAT1	chr11	65266563	-	STK3	chr8	99692441	-
3UTR-intron	ENST00000534336	ENST00000521768		ChiTaRS3.1			AW864171	MALAT1	chr11	65266563	-	STK3	chr8	99692441	-
intron-intron	ENST00000369002	ENST00000342895		ChiTaRS3.1			BQ006221	SEC63	chr6	108189584	+	LRRC39	chr1	100616336	-
intron-intron	ENST00000369002	ENST00000370138		ChiTaRS3.1			BQ006221	SEC63	chr6	108189584	+	LRRC39	chr1	100616336	-
intron-intron	ENST00000369002	ENST00000370137		ChiTaRS3.1			BQ006221	SEC63	chr6	108189584	+	LRRC39	chr1	100616336	-
intron-intron	ENST00000460009	ENST00000342895		ChiTaRS3.1			BQ006221	SEC63	chr6	108189584	+	LRRC39	chr1	100616336	-
intron-intron	ENST00000460009	ENST00000370138		ChiTaRS3.1			BQ006221	SEC63	chr6	108189584	+	LRRC39	chr1	100616336	-
intron-intron	ENST00000460009	ENST00000370137		ChiTaRS3.1			BQ006221	SEC63	chr6	108189584	+	LRRC39	chr1	100616336	-
intron-intron	ENST00000377403	ENST00000544305		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374630		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000400191		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374632		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000374627		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000377403	ENST00000465676		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000544305		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374630		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000400191		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374632		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000374627		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000602477	ENST00000465676		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000544305		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374630		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000400191		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374632		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000374627		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000495451	ENST00000465676		ChiTaRS3.1			BF738611	H6PD	chr1	9322641	+	EPHB2	chr1	23060417	-
intron-intron	ENST00000539935	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000539935	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000539935	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000539935	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000360283	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000360283	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000360283	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000360283	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000534999	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000534999	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000534999	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000534999	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000397327	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000397327	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000397327	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000397327	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000427385	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000427385	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000427385	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000427385	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000201943	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000201943	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000201943	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000201943	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000475848	ENST00000305557		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000475848	ENST00000272430		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000475848	ENST00000233330		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000475848	ENST00000484453		ChiTaRS3.1			BF853581	CACNB4	chr2	152740722	+	RTKN	chr2	74659187	-
intron-intron	ENST00000398514	ENST00000267202		ChiTaRS3.1			BE830391	DPYSL3	chr5	146772445	-	VPS37B	chr12	123369031	-
intron-intron	ENST00000343218	ENST00000267202		ChiTaRS3.1			BE830391	DPYSL3	chr5	146772445	-	VPS37B	chr12	123369031	-
intron-intron	ENST00000534907	ENST00000267202		ChiTaRS3.1			BE830391	DPYSL3	chr5	146772445	-	VPS37B	chr12	123369031	-
intron-intron	ENST00000504965	ENST00000267202		ChiTaRS3.1			BE830391	DPYSL3	chr5	146772445	-	VPS37B	chr12	123369031	-
intron-3UTR	ENST00000303538	ENST00000303538		ChiTaRS3.1			BM449661	PDS5A	chr4	39826436	+	PDS5A	chr4	39826374	-
intron-intron	ENST00000303538	ENST00000503396		ChiTaRS3.1			BM449661	PDS5A	chr4	39826436	+	PDS5A	chr4	39826374	-
intron-3UTR	ENST00000503396	ENST00000303538		ChiTaRS3.1			BM449661	PDS5A	chr4	39826436	+	PDS5A	chr4	39826374	-
intron-intron	ENST00000503396	ENST00000503396		ChiTaRS3.1			BM449661	PDS5A	chr4	39826436	+	PDS5A	chr4	39826374	-
intron-3CDS	ENST00000336654	ENST00000216254		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000336654	ENST00000396512		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-intron	ENST00000336654	ENST00000466237		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000375883	ENST00000216254		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000375883	ENST00000396512		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-intron	ENST00000375883	ENST00000466237		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000375871	ENST00000216254		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000375871	ENST00000396512		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-intron	ENST00000375871	ENST00000466237		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000605159	ENST00000216254		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000605159	ENST00000396512		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-intron	ENST00000605159	ENST00000466237		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000325303	ENST00000216254		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000325303	ENST00000396512		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-intron	ENST00000325303	ENST00000466237		ChiTaRS3.1			CV352271	CDK20	chr9	90584246	+	ACO2	chr22	41923971	-
intron-3CDS	ENST00000444376	ENST00000444376		ChiTaRS3.1			CN262461	HNRNPU	chr1	245021413	+	HNRNPU	chr1	245021015	-
intron-3CDS	ENST00000444376	ENST00000283179		ChiTaRS3.1			CN262461	HNRNPU	chr1	245021413	+	HNRNPU	chr1	245021015	-
intron-3CDS	ENST00000283179	ENST00000444376		ChiTaRS3.1			CN262461	HNRNPU	chr1	245021413	+	HNRNPU	chr1	245021015	-
intron-3CDS	ENST00000283179	ENST00000283179		ChiTaRS3.1			CN262461	HNRNPU	chr1	245021413	+	HNRNPU	chr1	245021015	-
intron-intron	ENST00000505618	ENST00000505618		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000505618	ENST00000381799		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000505618	ENST00000514143		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000381799	ENST00000505618		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000381799	ENST00000381799		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000381799	ENST00000514143		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000514143	ENST00000505618		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000514143	ENST00000381799		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000514143	ENST00000514143		ChiTaRS3.1			AA480541	RHOH	chr4	40202523	+	RHOH	chr4	40202800	-
intron-intron	ENST00000549190	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000395580	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000337898	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000358314	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000395568	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000256678	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000449194	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000552761	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000317560	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000432191	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-intron	ENST00000550535	ENST00000243346		ChiTaRS3.1			DA251271	PPHLN1	chr12	42818932	+	NMI	chr2	152130108	-
intron-3CDS	ENST00000377474	ENST00000521689		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000377474	ENST00000254898		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000377474	ENST00000524308		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000377474	ENST00000522025		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000377474	ENST00000520016		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-intron	ENST00000377474	ENST00000518238		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000317765	ENST00000521689		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000317765	ENST00000254898		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000317765	ENST00000524308		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000317765	ENST00000522025		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-3CDS	ENST00000317765	ENST00000520016		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-intron	ENST00000317765	ENST00000518238		ChiTaRS3.1			BE763321	KCTD12	chr13	77454936	-	MATN2	chr8	99045375	-
intron-5UTR	ENST00000585421	ENST00000585421		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000585421	ENST00000536189		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000585421	ENST00000262768		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000585421	ENST00000586057		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000536189	ENST00000585421		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000536189	ENST00000536189		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000536189	ENST00000262768		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000536189	ENST00000586057		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000262768	ENST00000585421		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000262768	ENST00000536189		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000262768	ENST00000262768		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000262768	ENST00000586057		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000586057	ENST00000585421		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000586057	ENST00000536189		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000586057	ENST00000262768		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
intron-5UTR	ENST00000586057	ENST00000586057		ChiTaRS3.1			BM719411	TIMP2	chr17	76851683	+	TIMP2	chr17	76869972	-
5CDS-intron	ENST00000341911	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000341911	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000316528	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000442647	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000367814	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000525369	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534121	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000533624	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000534044	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000528774	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
3UTR-intron	ENST00000531845	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
5CDS-intron	ENST00000527615	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000380934		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000380959		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000380953		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000397575		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000397581		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000397579		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000543693		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000380924		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-intron	ENST00000420123	ENST00000380921		ChiTaRS3.1			FJ969915	MYB	chr6	135524462	+	NFIB	chr9	14102512	-
intron-3UTR	ENST00000265044	ENST00000375712		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000265044	ENST00000418717		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000467789	ENST00000375712		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000467789	ENST00000418717		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000476217	ENST00000375712		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000476217	ENST00000418717		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000478842	ENST00000375712		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000478842	ENST00000418717		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000463503	ENST00000375712		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000463503	ENST00000418717		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000496050	ENST00000375712		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000496050	ENST00000418717		ChiTaRS3.1			AI159851	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			AK054921	CDR1	chrX	139866825	+	CDR1	chrX	139865330	+
3UTR-3UTR	ENST00000373615	ENST00000327111		ChiTaRS3.1			BF953191	LHX2	chr9	126795120	-	NR2F1	chr5	92929804	-
3UTR-3UTR	ENST00000373615	ENST00000506162		ChiTaRS3.1			BF953191	LHX2	chr9	126795120	-	NR2F1	chr5	92929804	-
intron-intron	ENST00000046640	ENST00000406337		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000046640	ENST00000265713		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000046640	ENST00000396930		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000046640	ENST00000485568		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000381870	ENST00000406337		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000381870	ENST00000265713		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000381870	ENST00000396930		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000381870	ENST00000485568		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000441220	ENST00000406337		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000441220	ENST00000265713		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000441220	ENST00000396930		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000441220	ENST00000485568		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000414524	ENST00000406337		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000414524	ENST00000265713		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000414524	ENST00000396930		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000414524	ENST00000485568		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000488623	ENST00000406337		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000488623	ENST00000265713		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000488623	ENST00000396930		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000488623	ENST00000485568		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000399306	ENST00000406337		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000399306	ENST00000265713		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000399306	ENST00000396930		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
intron-intron	ENST00000399306	ENST00000485568		ChiTaRS3.1			BF854861	CTNS	chr17	3560106	+	KAT6A	chr8	41809053	+
5CDS-5UTR	ENST00000451311	ENST00000264027		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000451311	ENST00000534230		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000451311	ENST00000392789		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000451311	ENST00000528991		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000380636	ENST00000264027		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000380636	ENST00000534230		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000380636	ENST00000392789		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000380636	ENST00000528991		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000380635	ENST00000264027		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000380635	ENST00000534230		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000380635	ENST00000392789		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000380635	ENST00000528991		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000380633	ENST00000264027		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-5UTR	ENST00000380633	ENST00000534230		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000380633	ENST00000392789		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
5CDS-intron	ENST00000380633	ENST00000528991		ChiTaRS3.1			D85181	TMSB4X	chrX	12994384	-	SC5D	chr11	121163480	+
intron-intron	ENST00000264211	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000414350		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000343632		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000381756		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000405147		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000325180		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000337437		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000406772		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000488672		ChiTaRS3.1			BQ319981	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
In-frame	ENST00000346169	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000346169	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000414031	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000392537	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000382330	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000350481	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000352767	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000427845	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000342981	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000319274	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000424196	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000411531	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000441154	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000434061	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000346169		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000414031		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000392537		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000382330		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000350481		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000352767		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000427845		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000342981		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000319274		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000424196		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000411531		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000441154		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000434061		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
In-frame	ENST00000435046	ENST00000435046		ChiTaRS3.1			BQ212371	EIF4G1	chr3	184043088	+	EIF4G1	chr3	184042116	+
intron-intron	ENST00000548757	ENST00000577730		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
intron-intron	ENST00000548757	ENST00000299345		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
intron-intron	ENST00000548757	ENST00000577390		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
intron-3UTR	ENST00000548757	ENST00000584337		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
intron-intron	ENST00000548757	ENST00000580044		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
3UTR-intron	ENST00000356891	ENST00000577730		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
3UTR-intron	ENST00000356891	ENST00000299345		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
3UTR-intron	ENST00000356891	ENST00000577390		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
3UTR-3UTR	ENST00000356891	ENST00000584337		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
3UTR-intron	ENST00000356891	ENST00000580044		ChiTaRS3.1			AV732581	C12orf29	chr12	88443765	-	CDH8	chr16	61759755	-
intron-3CDS	ENST00000265846	ENST00000356654		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000265846	ENST00000396684		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000449296	ENST00000356654		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000449296	ENST00000396684		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000539900	ENST00000356654		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000539900	ENST00000396684		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000463358	ENST00000356654		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
intron-3CDS	ENST00000463358	ENST00000396684		ChiTaRS3.1			BF761741	ADAP1	chr7	970874	-	ATN1	chr12	7043713	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW410271	MALAT1	chr11	65267651	+	MALAT1	chr11	65266960	+
5CDS-intron	ENST00000338970	ENST00000370010		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000338970	ENST00000370014		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000338970	ENST00000447266		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000338970	ENST00000541192		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000338970	ENST00000327284		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000338970	ENST00000436928		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000396203	ENST00000370010		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000396203	ENST00000370014		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000396203	ENST00000447266		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000396203	ENST00000541192		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000396203	ENST00000327284		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000396203	ENST00000436928		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000416518	ENST00000370010		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000416518	ENST00000370014		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000416518	ENST00000447266		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000416518	ENST00000541192		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000416518	ENST00000327284		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
5CDS-intron	ENST00000416518	ENST00000436928		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000461368	ENST00000370010		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000461368	ENST00000370014		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000461368	ENST00000447266		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000461368	ENST00000541192		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000461368	ENST00000327284		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000461368	ENST00000436928		ChiTaRS3.1			BP334301	RPL14	chr3	40503146	+	SENP6	chr6	76411705	+
intron-intron	ENST00000376300	ENST00000329957		ChiTaRS3.1			AW362571	CCDC93	chr2	118712309	+	MOB2	chr11	1774370	-
intron-intron	ENST00000376300	ENST00000526462		ChiTaRS3.1			AW362571	CCDC93	chr2	118712309	+	MOB2	chr11	1774370	-
intron-intron	ENST00000319432	ENST00000329957		ChiTaRS3.1			AW362571	CCDC93	chr2	118712309	+	MOB2	chr11	1774370	-
intron-intron	ENST00000319432	ENST00000526462		ChiTaRS3.1			AW362571	CCDC93	chr2	118712309	+	MOB2	chr11	1774370	-
intron-intron	ENST00000460781	ENST00000329957		ChiTaRS3.1			AW362571	CCDC93	chr2	118712309	+	MOB2	chr11	1774370	-
intron-intron	ENST00000460781	ENST00000526462		ChiTaRS3.1			AW362571	CCDC93	chr2	118712309	+	MOB2	chr11	1774370	-
intron-3CDS	ENST00000369299	ENST00000395871		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000369299	ENST00000371500		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000369299	ENST00000312553		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-intron	ENST00000369299	ENST00000471210		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000393045	ENST00000395871		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000393045	ENST00000371500		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000393045	ENST00000312553		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-intron	ENST00000393045	ENST00000471210		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000369298	ENST00000395871		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000369298	ENST00000371500		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-3CDS	ENST00000369298	ENST00000312553		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-intron	ENST00000369298	ENST00000471210		ChiTaRS3.1			AW748401	PIAS3	chr1	145585161	+	PODN	chr1	53543355	+
intron-5UTR	ENST00000391878	ENST00000518164		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-intron	ENST00000391878	ENST00000521291		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391878	ENST00000396070		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391878	ENST00000287038		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391878	ENST00000523172		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000343537	ENST00000518164		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-intron	ENST00000343537	ENST00000521291		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000343537	ENST00000396070		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000343537	ENST00000287038		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000343537	ENST00000523172		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391879	ENST00000518164		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-intron	ENST00000391879	ENST00000521291		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391879	ENST00000396070		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391879	ENST00000287038		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000391879	ENST00000523172		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000498843	ENST00000518164		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-intron	ENST00000498843	ENST00000521291		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000498843	ENST00000396070		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000498843	ENST00000287038		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-5UTR	ENST00000498843	ENST00000523172		ChiTaRS3.1			AW662691	TP53BP2	chr1	223968077	+	RPL30	chr8	99057760	-
intron-intron	ENST00000299886	ENST00000403627		ChiTaRS3.1			BX091521	COG1	chr17	71202525	-	FAM104A	chr17	71207321	-
intron-intron	ENST00000299886	ENST00000405159		ChiTaRS3.1			BX091521	COG1	chr17	71202525	-	FAM104A	chr17	71207321	-
intron-intron	ENST00000299886	ENST00000583178		ChiTaRS3.1			BX091521	COG1	chr17	71202525	-	FAM104A	chr17	71207321	-
intron-intron	ENST00000299886	ENST00000580032		ChiTaRS3.1			BX091521	COG1	chr17	71202525	-	FAM104A	chr17	71207321	-
intron-intron	ENST00000299886	ENST00000581110		ChiTaRS3.1			BX091521	COG1	chr17	71202525	-	FAM104A	chr17	71207321	-
intron-intron	ENST00000299886	ENST00000583024		ChiTaRS3.1			BX091521	COG1	chr17	71202525	-	FAM104A	chr17	71207321	-
5CDS-intron	ENST00000409478	ENST00000344157		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409478	ENST00000355665		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409478	ENST00000579690		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409478	ENST00000552105		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409478	ENST00000550485		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000329971	ENST00000344157		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000329971	ENST00000355665		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000329971	ENST00000579690		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000329971	ENST00000552105		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000329971	ENST00000550485		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000264160	ENST00000344157		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000264160	ENST00000355665		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000264160	ENST00000579690		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000264160	ENST00000552105		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000264160	ENST00000550485		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000410054	ENST00000344157		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000410054	ENST00000355665		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000410054	ENST00000579690		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000410054	ENST00000552105		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000410054	ENST00000550485		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409606	ENST00000344157		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409606	ENST00000355665		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409606	ENST00000579690		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409606	ENST00000552105		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
5CDS-intron	ENST00000409606	ENST00000550485		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
intron-intron	ENST00000443537	ENST00000344157		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
intron-intron	ENST00000443537	ENST00000355665		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
intron-intron	ENST00000443537	ENST00000579690		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
intron-intron	ENST00000443537	ENST00000552105		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
intron-intron	ENST00000443537	ENST00000550485		ChiTaRS3.1			BF798521	R3HDM1	chr2	136432942	+	YTHDC1	chr4	15815	-
intron-3UTR	ENST00000324439	ENST00000307630		ChiTaRS3.1			BQ376661	RCHY1	chr4	76407481	+	YWHAG	chr7	75956368	-
intron-3UTR	ENST00000451788	ENST00000307630		ChiTaRS3.1			BQ376661	RCHY1	chr4	76407481	+	YWHAG	chr7	75956368	-
intron-3UTR	ENST00000380840	ENST00000307630		ChiTaRS3.1			BQ376661	RCHY1	chr4	76407481	+	YWHAG	chr7	75956368	-
intron-3UTR	ENST00000512706	ENST00000307630		ChiTaRS3.1			BQ376661	RCHY1	chr4	76407481	+	YWHAG	chr7	75956368	-
intron-3UTR	ENST00000513257	ENST00000307630		ChiTaRS3.1			BQ376661	RCHY1	chr4	76407481	+	YWHAG	chr7	75956368	-
intron-3UTR	ENST00000514021	ENST00000307630		ChiTaRS3.1			BQ376661	RCHY1	chr4	76407481	+	YWHAG	chr7	75956368	-
intron-3CDS	ENST00000337537	ENST00000425019		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000324219		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000350198		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000302217		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000413150		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000347699		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000456652		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000337537	ENST00000350878		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-intron	ENST00000337537	ENST00000498066		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000425019		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000324219		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000350198		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000302217		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000413150		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000347699		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000456652		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000555899	ENST00000350878		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-intron	ENST00000555899	ENST00000498066		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000425019		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000324219		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000350198		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000302217		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000413150		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000347699		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000456652		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000422769	ENST00000350878		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-intron	ENST00000422769	ENST00000498066		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000425019		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000324219		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000350198		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000302217		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000413150		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000347699		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000456652		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-3CDS	ENST00000553266	ENST00000350878		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
intron-intron	ENST00000553266	ENST00000498066		ChiTaRS3.1			BI025151	PPP2R5E	chr14	63953843	+	MAP4K4	chr2	102493583	-
3UTR-intron	ENST00000580825	ENST00000324771		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000418800		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000454612		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000376569		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000446312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000376575		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000376570		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000376568		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000452441		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000508312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000376567		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000513240		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000508472		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000361741		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000434428		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000483193		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000383377		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000400414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000259875		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000552721		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000553015		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000468225		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000400411		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000400410		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000412329		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000449518		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000427053		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000548962		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000548133		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000462241		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000415092		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000453510		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000550666		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000488414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000422628		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000400492		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000400491		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000400489		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000549026		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000550395		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000490712		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000400488		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000580825	ENST00000400486		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000552434		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000430933		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000429699		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000421229		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000550384		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000552068		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000487780		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000454774		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000419412		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000580825	ENST00000548693		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000324771		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000418800		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000454612		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000376569		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000446312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000376575		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000376570		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000376568		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000452441		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000508312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000376567		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000513240		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000508472		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000361741		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000434428		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000483193		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000383377		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000400414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000259875		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000552721		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000553015		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000468225		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000400411		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000400410		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000412329		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000449518		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000427053		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000548962		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000548133		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000462241		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000415092		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000453510		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000550666		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000488414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000422628		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000400492		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000400491		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000400489		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000549026		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000550395		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000490712		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000400488		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000254079	ENST00000400486		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000552434		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000430933		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000429699		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000421229		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000550384		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000552068		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000487780		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000454774		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000419412		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000254079	ENST00000548693		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000324771		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000418800		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000454612		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000376569		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000446312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000376575		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000376570		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000376568		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000452441		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000508312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000376567		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000513240		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000508472		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000361741		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000434428		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000483193		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000383377		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000400414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000259875		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000552721		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000553015		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000468225		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000400411		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000400410		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000412329		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000449518		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000427053		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000548962		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000548133		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000462241		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000415092		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000453510		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000550666		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000488414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000422628		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000400492		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000400491		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000400489		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000549026		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000550395		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000490712		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000400488		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000579000	ENST00000400486		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000552434		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000430933		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000429699		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000421229		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000550384		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000552068		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000487780		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000454774		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000419412		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000579000	ENST00000548693		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000324771		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000418800		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000454612		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000376569		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000446312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000376575		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000376570		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000376568		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000452441		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000508312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000376567		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000513240		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000508472		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000361741		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000434428		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000483193		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000383377		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000400414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000259875		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000552721		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000553015		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000468225		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000400411		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000400410		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000412329		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000449518		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000427053		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000548962		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000548133		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000462241		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000415092		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000453510		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000550666		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000488414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000422628		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000400492		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000400491		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000400489		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000549026		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000550395		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000490712		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000400488		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394265	ENST00000400486		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000552434		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000430933		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000429699		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000421229		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000550384		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000552068		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000487780		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000454774		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000419412		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394265	ENST00000548693		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000324771		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000418800		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000454612		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000376569		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000446312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000376575		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000376570		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000376568		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000452441		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000508312		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000376567		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000513240		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000508472		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000361741		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000434428		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000483193		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000383377		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000400414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000259875		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000552721		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000553015		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000468225		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000400411		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000400410		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000412329		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000449518		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000427053		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000548962		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000548133		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000462241		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000415092		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000453510		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000550666		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000488414		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000422628		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000400492		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000400491		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000400489		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000549026		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000550395		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000490712		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000400488		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-3UTR	ENST00000394267	ENST00000400486		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000552434		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000430933		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000429699		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000421229		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000550384		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000552068		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000487780		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000454774		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000419412		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
3UTR-intron	ENST00000394267	ENST00000548693		ChiTaRS3.1			BF923651	PPP1R1B	chr17	37792159	+	DDR1	chr6	2160266	-
intron-3CDS	ENST00000447944	ENST00000447944		ChiTaRS3.1			BI025641	PNPT1	chr2	55898480	-	PNPT1	chr2	55894144	+
intron-intron	ENST00000400198	ENST00000449576		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000396099		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000425416		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000256720		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000396097		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000404113		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000464517		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000396098		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000449576		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000396099		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000425416		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000256720		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000396097		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000404113		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000464517		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000396098		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000449576		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000396099		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000425416		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000256720		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000396097		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000404113		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000464517		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000396098		ChiTaRS3.1			BF365751	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-5UTR	ENST00000324849	ENST00000483195		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000324849	ENST00000394019		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000324849	ENST00000423644		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324849	ENST00000346834		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324849	ENST00000359484		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324849	ENST00000357822		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324849	ENST00000358683		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324849	ENST00000377632		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324849	ENST00000377634		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000324815	ENST00000483195		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000324815	ENST00000394019		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000324815	ENST00000423644		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324815	ENST00000346834		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324815	ENST00000359484		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324815	ENST00000357822		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324815	ENST00000358683		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324815	ENST00000377632		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000324815	ENST00000377634		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521829	ENST00000483195		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521829	ENST00000394019		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521829	ENST00000423644		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521829	ENST00000346834		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521829	ENST00000359484		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521829	ENST00000357822		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521829	ENST00000358683		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521829	ENST00000377632		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521829	ENST00000377634		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521005	ENST00000483195		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521005	ENST00000394019		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521005	ENST00000423644		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521005	ENST00000346834		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521005	ENST00000359484		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521005	ENST00000357822		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521005	ENST00000358683		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521005	ENST00000377632		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521005	ENST00000377634		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521162	ENST00000483195		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521162	ENST00000394019		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-5UTR	ENST00000521162	ENST00000423644		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521162	ENST00000346834		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521162	ENST00000359484		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521162	ENST00000357822		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521162	ENST00000358683		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521162	ENST00000377632		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
intron-intron	ENST00000521162	ENST00000377634		ChiTaRS3.1			BE162411	VPS37A	chr8	17111953	-	SLC4A5	chr2	74454220	-
3UTR-3CDS	ENST00000334186	ENST00000584601		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000334186	ENST00000406381		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000334186	ENST00000541774		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000334186	ENST00000445658		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000334186	ENST00000540147		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000334186	ENST00000584450		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000334186	ENST00000269571		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-intron	ENST00000334186	ENST00000578199		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-intron	ENST00000334186	ENST00000540042		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-intron	ENST00000334186	ENST00000584888		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000584601		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000406381		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000541774		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000445658		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000540147		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000584450		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-3CDS	ENST00000602351	ENST00000269571		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-intron	ENST00000602351	ENST00000578199		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-intron	ENST00000602351	ENST00000540042		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
3UTR-intron	ENST00000602351	ENST00000584888		ChiTaRS3.1			BF837831	PPFIA3	chr19	49653673	-	ERBB2	chr17	37881146	-
intron-3UTR	ENST00000251849	ENST00000299432		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000251849	ENST00000372912		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-3UTR	ENST00000442415	ENST00000299432		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000442415	ENST00000372912		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-3UTR	ENST00000534997	ENST00000299432		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000534997	ENST00000372912		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-3UTR	ENST00000542177	ENST00000299432		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000542177	ENST00000372912		ChiTaRS3.1			AA262871	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000451564	ENST00000393376		ChiTaRS3.1			H48691	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000451564	ENST00000473553		ChiTaRS3.1			H48691	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000451564	ENST00000417368		ChiTaRS3.1			H48691	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000402038	ENST00000304116		ChiTaRS3.1			BF002721	PARG	chr10	51562425	-	ZNF565	chr19	36693683	+
intron-intron	ENST00000402038	ENST00000392173		ChiTaRS3.1			BF002721	PARG	chr10	51562425	-	ZNF565	chr19	36693683	+
intron-intron	ENST00000402038	ENST00000355114		ChiTaRS3.1			BF002721	PARG	chr10	51562425	-	ZNF565	chr19	36693683	+
intron-intron	ENST00000492350	ENST00000304116		ChiTaRS3.1			BF002721	PARG	chr10	51562425	-	ZNF565	chr19	36693683	+
intron-intron	ENST00000492350	ENST00000392173		ChiTaRS3.1			BF002721	PARG	chr10	51562425	-	ZNF565	chr19	36693683	+
intron-intron	ENST00000492350	ENST00000355114		ChiTaRS3.1			BF002721	PARG	chr10	51562425	-	ZNF565	chr19	36693683	+
intron-intron	ENST00000341426	ENST00000220592		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000341426	ENST00000519980		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000341426	ENST00000517293		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000341991	ENST00000220592		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000341991	ENST00000519980		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000341991	ENST00000517293		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000378625	ENST00000220592		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000378625	ENST00000519980		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000378625	ENST00000517293		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000344463	ENST00000220592		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000344463	ENST00000519980		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000344463	ENST00000517293		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000492768	ENST00000220592		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000492768	ENST00000519980		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000492768	ENST00000517293		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000342348	ENST00000220592		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000342348	ENST00000519980		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
intron-intron	ENST00000342348	ENST00000517293		ChiTaRS3.1			BM008111	NADK	chr1	1689908	-	AGO2	chr8	141644374	-
3UTR-3UTR	ENST00000380737	ENST00000380737		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000380737	ENST00000315985		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-intron	ENST00000380737	ENST00000523473		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000315985	ENST00000380737		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000315985	ENST00000315985		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-intron	ENST00000315985	ENST00000523473		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-3UTR	ENST00000523473	ENST00000380737		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-3UTR	ENST00000523473	ENST00000315985		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-intron	ENST00000523473	ENST00000523473		ChiTaRS3.1			AW879061	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-5UTR	ENST00000523629	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000523629	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000396218	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000396218	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000265814	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000265814	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000360348	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000360348	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000436581	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000436581	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000520724	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000520724	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-5UTR	ENST00000518844	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
5CDS-intron	ENST00000518844	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000522163	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000522163	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000422361	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000422361	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-5UTR	ENST00000521553	ENST00000523629		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000396218		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000265814		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000360348		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000436581		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000520724		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000518844		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000522163		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000422361		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
intron-intron	ENST00000521553	ENST00000521553		ChiTaRS3.1			BF478161	RUNX1T1	chr8	92972470	-	RUNX1T1	chr8	93115279	-
In-frame	ENST00000512913	ENST00000545074		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000512913	ENST00000540249		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000512913	ENST00000379806		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000512913	ENST00000422285		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000512913	ENST00000379805		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000512913	ENST00000379804		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000512913	ENST00000478795		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000265073	ENST00000545074		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000265073	ENST00000540249		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000265073	ENST00000379806		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000265073	ENST00000422285		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000265073	ENST00000379805		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000265073	ENST00000379804		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000265073	ENST00000478795		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000515355	ENST00000545074		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000515355	ENST00000540249		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000515355	ENST00000379806		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000515355	ENST00000422285		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000515355	ENST00000379805		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000515355	ENST00000379804		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000515355	ENST00000478795		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000502897	ENST00000545074		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000502897	ENST00000540249		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000502897	ENST00000379806		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
In-frame	ENST00000502897	ENST00000422285		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000502897	ENST00000379805		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000502897	ENST00000379804		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
5CDS-intron	ENST00000502897	ENST00000478795		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-3CDS	ENST00000504789	ENST00000545074		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-3CDS	ENST00000504789	ENST00000540249		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-3CDS	ENST00000504789	ENST00000379806		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-3CDS	ENST00000504789	ENST00000422285		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-intron	ENST00000504789	ENST00000379805		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-intron	ENST00000504789	ENST00000379804		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-intron	ENST00000504789	ENST00000478795		ChiTaRS3.1			CB113851	SUB1	chr5	32591771	+	PDHA1	chrX	19373566	+
3UTR-3CDS	ENST00000341259	ENST00000389153		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
3UTR-3CDS	ENST00000341259	ENST00000608853		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
3UTR-3CDS	ENST00000341259	ENST00000377617		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
3UTR-3UTR	ENST00000341259	ENST00000550104		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
3UTR-3UTR	ENST00000341259	ENST00000542287		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
3UTR-3UTR	ENST00000341259	ENST00000535949		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
3UTR-intron	ENST00000341259	ENST00000549455		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-3CDS	ENST00000538307	ENST00000389153		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-3CDS	ENST00000538307	ENST00000608853		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-3CDS	ENST00000538307	ENST00000377617		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-3UTR	ENST00000538307	ENST00000550104		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-3UTR	ENST00000538307	ENST00000542287		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-3UTR	ENST00000538307	ENST00000535949		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-intron	ENST00000538307	ENST00000549455		ChiTaRS3.1			Z78331	SH2B3	chr12	111888923	-	ATXN2	chr12	111895165	-
intron-intron	ENST00000545391	ENST00000395715		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000220888		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000519076		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000520276		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000519674		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000395715		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000220888		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000519076		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000520276		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000519674		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000395715		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000220888		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000519076		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000520276		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000519674		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000395715		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000220888		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000519076		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000520276		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000519674		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000395715		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000220888		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000519076		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000520276		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000519674		ChiTaRS3.1			BF327691	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000295225	ENST00000295225		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000295225	ENST00000377181		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000295225	ENST00000360990		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000295225	ENST00000468529		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000377181	ENST00000295225		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000377181	ENST00000377181		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000377181	ENST00000360990		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000377181	ENST00000468529		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000360990	ENST00000295225		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000360990	ENST00000377181		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000360990	ENST00000360990		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000360990	ENST00000468529		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000468529	ENST00000295225		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000468529	ENST00000377181		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000468529	ENST00000360990		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
intron-intron	ENST00000468529	ENST00000468529		ChiTaRS3.1			AA666181	KCNIP3	chr2	95996105	+	KCNIP3	chr2	95995707	-
5CDS-5UTR	ENST00000263119	ENST00000263119		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000263119	ENST00000405822		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000263119	ENST00000398319		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-intron	ENST00000263119	ENST00000337989		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-intron	ENST00000263119	ENST00000485008		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000405822	ENST00000263119		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000405822	ENST00000405822		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000405822	ENST00000398319		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-intron	ENST00000405822	ENST00000337989		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-intron	ENST00000405822	ENST00000485008		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000398319	ENST00000263119		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000398319	ENST00000405822		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-5UTR	ENST00000398319	ENST00000398319		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-intron	ENST00000398319	ENST00000337989		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
5CDS-intron	ENST00000398319	ENST00000485008		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-5UTR	ENST00000337989	ENST00000263119		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-5UTR	ENST00000337989	ENST00000405822		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-5UTR	ENST00000337989	ENST00000398319		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-intron	ENST00000337989	ENST00000337989		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-intron	ENST00000337989	ENST00000485008		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-5UTR	ENST00000485008	ENST00000263119		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-5UTR	ENST00000485008	ENST00000405822		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-5UTR	ENST00000485008	ENST00000398319		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-intron	ENST00000485008	ENST00000337989		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-intron	ENST00000485008	ENST00000485008		ChiTaRS3.1			AA344751	CABIN1	chr22	24463009	+	CABIN1	chr22	24431908	+
intron-intron	ENST00000263816	ENST00000328252		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263816	ENST00000534838		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263816	ENST00000483254		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000328252		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000534838		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000483254		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000328252		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000534838		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000483254		ChiTaRS3.1			CV324821	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443149	ENST00000328252		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000443149	ENST00000534838		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000443149	ENST00000483254		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000399933	ENST00000328252		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000399933	ENST00000534838		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000399933	ENST00000483254		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000381461	ENST00000328252		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000381461	ENST00000534838		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
intron-intron	ENST00000381461	ENST00000483254		ChiTaRS3.1			BF992941	KIAA2026	chr9	5920859	-	PAPPA	chr9	118975561	-
Frame-shit	ENST00000287497	ENST00000287497		ChiTaRS3.1			BE144171	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
Frame-shit	ENST00000287497	ENST00000544665		ChiTaRS3.1			BE144171	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
Frame-shit	ENST00000544665	ENST00000287497		ChiTaRS3.1			BE144171	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
Frame-shit	ENST00000544665	ENST00000544665		ChiTaRS3.1			BE144171	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
intron-3UTR	ENST00000527422	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000527422	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000527422	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
3UTR-3UTR	ENST00000356386	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
3UTR-intron	ENST00000356386	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
3UTR-intron	ENST00000356386	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-3UTR	ENST00000396934	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000396934	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000396934	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-3UTR	ENST00000377708	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000377708	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000377708	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-3UTR	ENST00000396948	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000396948	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000396948	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-3UTR	ENST00000532994	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000532994	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000532994	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-3UTR	ENST00000508906	ENST00000378004		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000508906	ENST00000274498		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
intron-intron	ENST00000508906	ENST00000486650		ChiTaRS3.1			AW378991	BTN3A2	chr6	26377128	-	ARHGAP26	chr5	142607371	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			CB852741	MALAT1	chr11	65268121	+	MALAT1	chr11	65266782	+
intron-3CDS	ENST00000599539	ENST00000216122		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000599539	ENST00000382011		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3UTR	ENST00000599539	ENST00000465557		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000339471	ENST00000216122		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000339471	ENST00000382011		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3UTR	ENST00000339471	ENST00000465557		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000251453	ENST00000216122		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000251453	ENST00000382011		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3UTR	ENST00000251453	ENST00000465557		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000601655	ENST00000216122		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3CDS	ENST00000601655	ENST00000382011		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
intron-3UTR	ENST00000601655	ENST00000465557		ChiTaRS3.1			BE621901	RPS16	chr19	39924390	+	MCM5	chr22	35808549	-
3UTR-3CDS	ENST00000590474	ENST00000590474		ChiTaRS3.1			F00521	MAP2K6	chr17	67538113	+	MAP2K6	chr17	67516476	+
3UTR-3CDS	ENST00000590474	ENST00000589647		ChiTaRS3.1			F00521	MAP2K6	chr17	67538113	+	MAP2K6	chr17	67516476	+
3UTR-3CDS	ENST00000589647	ENST00000590474		ChiTaRS3.1			F00521	MAP2K6	chr17	67538113	+	MAP2K6	chr17	67516476	+
3UTR-3CDS	ENST00000589647	ENST00000589647		ChiTaRS3.1			F00521	MAP2K6	chr17	67538113	+	MAP2K6	chr17	67516476	+
intron-3CDS	ENST00000379562	ENST00000379562		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000379562	ENST00000535925		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000379562	ENST00000463666		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000379562	ENST00000543003		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000535925	ENST00000379562		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000535925	ENST00000535925		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000535925	ENST00000463666		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000535925	ENST00000543003		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000463666	ENST00000379562		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000463666	ENST00000535925		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000463666	ENST00000463666		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000463666	ENST00000543003		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000543003	ENST00000379562		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000543003	ENST00000535925		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000543003	ENST00000463666		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-5UTR	ENST00000543003	ENST00000543003		ChiTaRS3.1			CB243501	KIN	chr10	7797862	+	KIN	chr10	7801909	-
intron-3CDS	ENST00000354473	ENST00000354473		ChiTaRS3.1			CB219131	VPS72	chr1	151149024	+	VPS72	chr1	151158399	-
intron-5UTR	ENST00000354473	ENST00000496809		ChiTaRS3.1			CB219131	VPS72	chr1	151149024	+	VPS72	chr1	151158399	-
intron-3CDS	ENST00000496809	ENST00000354473		ChiTaRS3.1			CB219131	VPS72	chr1	151149024	+	VPS72	chr1	151158399	-
intron-5UTR	ENST00000496809	ENST00000496809		ChiTaRS3.1			CB219131	VPS72	chr1	151149024	+	VPS72	chr1	151158399	-
3UTR-3CDS	ENST00000369902	ENST00000369902		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
3UTR-intron	ENST00000369902	ENST00000369899		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
3UTR-intron	ENST00000369902	ENST00000423559		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
3UTR-intron	ENST00000369902	ENST00000471000		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-3CDS	ENST00000369899	ENST00000369902		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000369899	ENST00000369899		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000369899	ENST00000423559		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000369899	ENST00000471000		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-3CDS	ENST00000423559	ENST00000369902		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000423559	ENST00000369899		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000423559	ENST00000423559		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000423559	ENST00000471000		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-3CDS	ENST00000471000	ENST00000369902		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000471000	ENST00000369899		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000471000	ENST00000423559		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
intron-intron	ENST00000471000	ENST00000471000		ChiTaRS3.1			AA362631	SUFU	chr10	104391012	+	SUFU	chr10	104389903	+
5CDS-3UTR	ENST00000301740	ENST00000301740		ChiTaRS3.1			BF930781	SRRM2	chr16	2818201	-	SRRM2	chr16	2820888	-
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BF930781	SRRM2	chr16	2818201	-	SRRM2	chr16	2820888	-
3UTR-3UTR	ENST00000574593	ENST00000301740		ChiTaRS3.1			BF930781	SRRM2	chr16	2818201	-	SRRM2	chr16	2820888	-
3UTR-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BF930781	SRRM2	chr16	2818201	-	SRRM2	chr16	2820888	-
intron-intron	ENST00000372445	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372445	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372445	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000436109	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000436109	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000436109	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
5UTR-intron	ENST00000372444	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
5UTR-intron	ENST00000372444	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
5UTR-intron	ENST00000372444	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372449	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372449	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372449	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000259751	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000259751	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000259751	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372452	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372452	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000372452	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000438588	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000438588	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000438588	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000483640	ENST00000371753		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000483640	ENST00000277554		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-intron	ENST00000483640	ENST00000467669		ChiTaRS3.1			DB230331	TJAP1	chr6	43446439	+	NACC2	chr9	138934895	-
intron-3CDS	ENST00000369582	ENST00000311862		ChiTaRS3.1			AA368821	CGA	chr6	87795320	+	PRG2	chr11	57156739	-
intron-3CDS	ENST00000369582	ENST00000533605		ChiTaRS3.1			AA368821	CGA	chr6	87795320	+	PRG2	chr11	57156739	-
intron-3CDS	ENST00000369582	ENST00000525955		ChiTaRS3.1			AA368821	CGA	chr6	87795320	+	PRG2	chr11	57156739	-
intron-intron	ENST00000595437	ENST00000340666		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000595437	ENST00000295987		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000376586	ENST00000340666		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000376586	ENST00000295987		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000319562	ENST00000340666		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000319562	ENST00000295987		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000376581	ENST00000340666		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000376581	ENST00000295987		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000593990	ENST00000340666		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000593990	ENST00000295987		ChiTaRS3.1			AI910121	FARP1	chr13	99059284	-	SYN1	chrX	47446088	-
intron-intron	ENST00000380916	ENST00000301765		ChiTaRS3.1			BF328511	ZDHHC21	chr9	14678325	-	VPS37C	chr11	60917275	-
intron-intron	ENST00000497966	ENST00000301765		ChiTaRS3.1			BF328511	ZDHHC21	chr9	14678325	-	VPS37C	chr11	60917275	-
intron-intron	ENST00000539317	ENST00000539317		ChiTaRS3.1			BF874331	SMAP2	chr1	40888386	-	SMAP2	chr1	40888245	+
intron-intron	ENST00000539317	ENST00000487871		ChiTaRS3.1			BF874331	SMAP2	chr1	40888386	-	SMAP2	chr1	40888245	+
intron-intron	ENST00000487871	ENST00000539317		ChiTaRS3.1			BF874331	SMAP2	chr1	40888386	-	SMAP2	chr1	40888245	+
intron-intron	ENST00000487871	ENST00000487871		ChiTaRS3.1			BF874331	SMAP2	chr1	40888386	-	SMAP2	chr1	40888245	+
intron-intron	ENST00000372583	ENST00000372583		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372583	ENST00000372584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372583	ENST00000247584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372583	ENST00000429157		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372583	ENST00000460604		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372584	ENST00000372583		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372584	ENST00000372584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372584	ENST00000247584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372584	ENST00000429157		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000372584	ENST00000460604		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000247584	ENST00000372583		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000247584	ENST00000372584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000247584	ENST00000247584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000247584	ENST00000429157		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000247584	ENST00000460604		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000429157	ENST00000372583		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000429157	ENST00000372584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000429157	ENST00000247584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000429157	ENST00000429157		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000429157	ENST00000460604		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000460604	ENST00000372583		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000460604	ENST00000372584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000460604	ENST00000247584		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000460604	ENST00000429157		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-intron	ENST00000460604	ENST00000460604		ChiTaRS3.1			AA578261	HIVEP3	chr1	41985001	-	HIVEP3	chr1	41985059	+
intron-5UTR	ENST00000264670	ENST00000225308		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000264670	ENST00000377095		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000264670	ENST00000590194		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-intron	ENST00000264670	ENST00000586016		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000264670	ENST00000537904		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000539938	ENST00000225308		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000539938	ENST00000377095		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000539938	ENST00000590194		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-intron	ENST00000539938	ENST00000586016		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000539938	ENST00000537904		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000506139	ENST00000225308		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000506139	ENST00000377095		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000506139	ENST00000590194		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-intron	ENST00000506139	ENST00000586016		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000506139	ENST00000537904		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000505264	ENST00000225308		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000505264	ENST00000377095		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000505264	ENST00000590194		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-intron	ENST00000505264	ENST00000586016		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-5UTR	ENST00000505264	ENST00000537904		ChiTaRS3.1			CN363781	NSUN2	chr5	6607412	+	SLC25A39	chr17	42402166	-
intron-3UTR	ENST00000260947	ENST00000299957		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000260947	ENST00000360824		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000260947	ENST00000345795		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-intron	ENST00000260947	ENST00000429162		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000449967	ENST00000299957		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000449967	ENST00000360824		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000449967	ENST00000345795		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-intron	ENST00000449967	ENST00000429162		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000432456	ENST00000299957		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000432456	ENST00000360824		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000432456	ENST00000345795		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-intron	ENST00000432456	ENST00000429162		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000471787	ENST00000299957		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000471787	ENST00000360824		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3UTR	ENST00000471787	ENST00000345795		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-intron	ENST00000471787	ENST00000429162		ChiTaRS3.1			BG168151	BARD1	chr2	215609547	-	CASC4	chr15	44706166	+
intron-3CDS	ENST00000290541	ENST00000290541		ChiTaRS3.1			CB854321	PSMB4	chr1	151373238	-	PSMB4	chr1	151373277	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835141	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000379251	ENST00000379251		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379251	ENST00000379253		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379251	ENST00000379254		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379251	ENST00000379270		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379251	ENST00000489394		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379253	ENST00000379251		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379253	ENST00000379253		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379253	ENST00000379254		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379253	ENST00000379270		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379253	ENST00000489394		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379254	ENST00000379251		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379254	ENST00000379253		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379254	ENST00000379254		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379254	ENST00000379270		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379254	ENST00000489394		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379270	ENST00000379251		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379270	ENST00000379253		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379270	ENST00000379254		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379270	ENST00000379270		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000379270	ENST00000489394		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000489394	ENST00000379251		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000489394	ENST00000379253		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000489394	ENST00000379254		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000489394	ENST00000379270		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
intron-intron	ENST00000489394	ENST00000489394		ChiTaRS3.1			BE180881	SAT1	chrX	23803181	+	SAT1	chrX	23803121	-
5CDS-intron	ENST00000312561	ENST00000377595		ChiTaRS3.1			AW389901	KIAA1551	chr12	32135006	+	UCHL3	chr13	76170634	+
5CDS-intron	ENST00000312561	ENST00000606347		ChiTaRS3.1			AW389901	KIAA1551	chr12	32135006	+	UCHL3	chr13	76170634	+
intron-intron	ENST00000535596	ENST00000377595		ChiTaRS3.1			AW389901	KIAA1551	chr12	32135006	+	UCHL3	chr13	76170634	+
intron-intron	ENST00000535596	ENST00000606347		ChiTaRS3.1			AW389901	KIAA1551	chr12	32135006	+	UCHL3	chr13	76170634	+
intron-intron	ENST00000537330	ENST00000537330		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000570891		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000306801		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000544334		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000537330	ENST00000575542		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000537330		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000570891		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000306801		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000544334		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000570891	ENST00000575542		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000537330		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000570891		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000306801		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000544334		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000306801	ENST00000575542		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000537330		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000570891		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000306801		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000544334		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000544334	ENST00000575542		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000537330		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000570891		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000306801		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000544334		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-intron	ENST00000575542	ENST00000575542		ChiTaRS3.1			AW859901	RPTOR	chr17	78662712	+	RPTOR	chr17	78661344	+
intron-3UTR	ENST00000504776	ENST00000225719		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000504776	ENST00000543464		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000504776	ENST00000584051		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-3UTR	ENST00000308234	ENST00000225719		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000308234	ENST00000543464		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000308234	ENST00000584051		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-3UTR	ENST00000513185	ENST00000225719		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000513185	ENST00000543464		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000513185	ENST00000584051		ChiTaRS3.1			BE173641	RGMB	chr5	98119304	-	CPD	chr17	28796374	-
intron-intron	ENST00000374820	ENST00000469100		ChiTaRS3.1			AW367711	PIGU	chr20	33158737	+	YARS	chr1	33247965	+
intron-intron	ENST00000374820	ENST00000373477		ChiTaRS3.1			AW367711	PIGU	chr20	33158737	+	YARS	chr1	33247965	+
intron-intron	ENST00000452740	ENST00000469100		ChiTaRS3.1			AW367711	PIGU	chr20	33158737	+	YARS	chr1	33247965	+
intron-intron	ENST00000452740	ENST00000373477		ChiTaRS3.1			AW367711	PIGU	chr20	33158737	+	YARS	chr1	33247965	+
intron-intron	ENST00000480175	ENST00000469100		ChiTaRS3.1			AW367711	PIGU	chr20	33158737	+	YARS	chr1	33247965	+
intron-intron	ENST00000480175	ENST00000373477		ChiTaRS3.1			AW367711	PIGU	chr20	33158737	+	YARS	chr1	33247965	+
3UTR-intron	ENST00000394633	ENST00000342183		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000401710		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000404971		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000406316		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000405472		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000401669		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000406859		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000402717		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000331040		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000394633	ENST00000405581		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000342183		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000401710		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000404971		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000406316		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000405472		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000401669		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000406859		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000402717		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000331040		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
3UTR-intron	ENST00000504120	ENST00000405581		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000342183		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000401710		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000404971		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000406316		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000405472		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000401669		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000406859		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000402717		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000331040		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000378133	ENST00000405581		ChiTaRS3.1			T07051	PCDHA1	chr5	140390754	-	NRXN1	chr2	50918798	-
intron-intron	ENST00000494664	ENST00000369250		ChiTaRS3.1			AW890881	TIMMDC1	chr3	119219495	+	FAM160B1	chr10	116601643	+
intron-intron	ENST00000494664	ENST00000369248		ChiTaRS3.1			AW890881	TIMMDC1	chr3	119219495	+	FAM160B1	chr10	116601643	+
intron-intron	ENST00000494664	ENST00000369246		ChiTaRS3.1			AW890881	TIMMDC1	chr3	119219495	+	FAM160B1	chr10	116601643	+
intron-intron	ENST00000493694	ENST00000369250		ChiTaRS3.1			AW890881	TIMMDC1	chr3	119219495	+	FAM160B1	chr10	116601643	+
intron-intron	ENST00000493694	ENST00000369248		ChiTaRS3.1			AW890881	TIMMDC1	chr3	119219495	+	FAM160B1	chr10	116601643	+
intron-intron	ENST00000493694	ENST00000369246		ChiTaRS3.1			AW890881	TIMMDC1	chr3	119219495	+	FAM160B1	chr10	116601643	+
intron-intron	ENST00000598205	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000598205	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000598205	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000598205	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000376970	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000376970	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000376970	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000376970	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000425460	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000425460	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000425460	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000425460	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000440075	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000440075	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000440075	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000440075	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000601313	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000601313	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000601313	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000601313	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000262269	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000262269	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000262269	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000262269	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000596571	ENST00000244007		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000596571	ENST00000373272		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000596571	ENST00000373271		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000596571	ENST00000608689		ChiTaRS3.1			BI014551	MYH14	chr19	50811894	-	PLCG1	chr20	39799262	-
intron-intron	ENST00000594786	ENST00000361525		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000366940		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000361395		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000366938		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000359162		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000493603		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000463665		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000487276		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000493748		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000471371		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000391890		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000366937		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000408911		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000594786	ENST00000360012		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000361525		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000366940		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000361395		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000366938		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000359162		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000493603		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000463665		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000487276		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000493748		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000471371		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000391890		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000366937		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000408911		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000599700	ENST00000360012		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000361525		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000366940		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000361395		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000366938		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000359162		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000493603		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000463665		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000487276		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000493748		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000471371		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000391890		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000366937		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000408911		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000263093	ENST00000360012		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000361525		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000366940		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000361395		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000366938		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000359162		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000493603		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000463665		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000487276		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000493748		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000471371		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000391890		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000366937		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000408911		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000601355	ENST00000360012		ChiTaRS3.1			AA457551	SLC27A5	chr19	59015502	+	ESRRG	chr1	216730758	+
intron-intron	ENST00000373943	ENST00000341776		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000373943	ENST00000397311		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000373943	ENST00000541660		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000373943	ENST00000474854		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000468761	ENST00000341776		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000468761	ENST00000397311		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000468761	ENST00000541660		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000468761	ENST00000474854		ChiTaRS3.1			CA436861	STX12	chr1	28105487	+	JARID2	chr6	15297417	+
intron-intron	ENST00000343023	ENST00000343023		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000343023	ENST00000354230		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000343023	ENST00000303887		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000354230	ENST00000343023		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000354230	ENST00000354230		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000354230	ENST00000303887		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000303887	ENST00000343023		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000303887	ENST00000354230		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000303887	ENST00000303887		ChiTaRS3.1			BF971291	MCM7	chr7	99690960	+	MCM7	chr7	99690758	-
intron-intron	ENST00000396024	ENST00000396024		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000451270		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000332680		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000421017		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000557937		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000396024		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000451270		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000332680		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000421017		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000557937		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000396024		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000451270		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000332680		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000421017		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000557937		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000396024		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000451270		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000332680		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000421017		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000557937		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000396024		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000451270		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000332680		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000421017		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000557937		ChiTaRS3.1			BF089231	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-3CDS	ENST00000262738	ENST00000318348		ChiTaRS3.1			BE716461	CELSR1	chr22	46757263	+	GLTP	chr12	110290475	+
intron-3CDS	ENST00000262738	ENST00000544393		ChiTaRS3.1			BE716461	CELSR1	chr22	46757263	+	GLTP	chr12	110290475	+
intron-3CDS	ENST00000395964	ENST00000318348		ChiTaRS3.1			BE716461	CELSR1	chr22	46757263	+	GLTP	chr12	110290475	+
intron-3CDS	ENST00000395964	ENST00000544393		ChiTaRS3.1			BE716461	CELSR1	chr22	46757263	+	GLTP	chr12	110290475	+
intron-3CDS	ENST00000497509	ENST00000318348		ChiTaRS3.1			BE716461	CELSR1	chr22	46757263	+	GLTP	chr12	110290475	+
intron-3CDS	ENST00000497509	ENST00000544393		ChiTaRS3.1			BE716461	CELSR1	chr22	46757263	+	GLTP	chr12	110290475	+
3UTR-3CDS	ENST00000341942	ENST00000341942		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3CDS	ENST00000341942	ENST00000441173		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3UTR	ENST00000341942	ENST00000468582		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3CDS	ENST00000441173	ENST00000341942		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3CDS	ENST00000441173	ENST00000441173		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3UTR	ENST00000441173	ENST00000468582		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3CDS	ENST00000468582	ENST00000341942		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3CDS	ENST00000468582	ENST00000441173		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
3UTR-3UTR	ENST00000468582	ENST00000468582		ChiTaRS3.1			BF742201	LAMTOR4	chr7	99751623	-	LAMTOR4	chr7	99751031	+
intron-intron	ENST00000607252	ENST00000367942		ChiTaRS3.1			BF946291	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000607252	ENST00000476437		ChiTaRS3.1			BF946291	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000318149	ENST00000367942		ChiTaRS3.1			BF946291	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000318149	ENST00000476437		ChiTaRS3.1			BF946291	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000361428	ENST00000367942		ChiTaRS3.1			BF946291	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000361428	ENST00000476437		ChiTaRS3.1			BF946291	ZNF318	chr6	43286789	+	ATF6	chr1	161842521	+
intron-intron	ENST00000367545	ENST00000367545		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000367545	ENST00000367526		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000367545	ENST00000480333		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000367526	ENST00000367545		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000367526	ENST00000367526		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000367526	ENST00000480333		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000480333	ENST00000367545		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000480333	ENST00000367526		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000480333	ENST00000480333		ChiTaRS3.1			BF372141	UTRN	chr6	145162027	+	UTRN	chr6	145162128	-
intron-intron	ENST00000253669	ENST00000396153		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000253669	ENST00000371778		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000253669	ENST00000545823		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000253669	ENST00000472808		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000448593	ENST00000396153		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000448593	ENST00000371778		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000448593	ENST00000545823		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000448593	ENST00000472808		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000593360	ENST00000396153		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000593360	ENST00000371778		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000593360	ENST00000545823		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-intron	ENST00000593360	ENST00000472808		ChiTaRS3.1			BQ318601	HAUS8	chr19	17170420	+	FAF1	chr1	51406327	+
intron-3CDS	ENST00000216190	ENST00000216190		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000216190	ENST00000478547		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000216190	ENST00000541106		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000216190	ENST00000405442		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-3CDS	ENST00000478547	ENST00000216190		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000478547	ENST00000478547		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000478547	ENST00000541106		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000478547	ENST00000405442		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-3CDS	ENST00000541106	ENST00000216190		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000541106	ENST00000478547		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000541106	ENST00000541106		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000541106	ENST00000405442		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-3CDS	ENST00000405442	ENST00000216190		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000405442	ENST00000478547		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000405442	ENST00000541106		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-intron	ENST00000405442	ENST00000405442		ChiTaRS3.1			AA463841	EIF3D	chr22	36906993	-	EIF3D	chr22	36907809	-
intron-3UTR	ENST00000314167	ENST00000330342		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-intron	ENST00000314167	ENST00000544833		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-intron	ENST00000314167	ENST00000543687		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-3UTR	ENST00000511163	ENST00000330342		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-intron	ENST00000511163	ENST00000544833		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-intron	ENST00000511163	ENST00000543687		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-3UTR	ENST00000509566	ENST00000330342		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-intron	ENST00000509566	ENST00000544833		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-intron	ENST00000509566	ENST00000543687		ChiTaRS3.1			BU679901	GAK	chr4	846525	-	ATP6V0A2	chr12	124245736	+
intron-3UTR	ENST00000333762	ENST00000333762		ChiTaRS3.1			AW612361	H1FX	chr3	129034289	+	H1FX	chr3	129033841	+
Frame-shit	ENST00000369239	ENST00000369046		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000369239	ENST00000467262		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000369239	ENST00000369044		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
Frame-shit	ENST00000438806	ENST00000369046		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000438806	ENST00000467262		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-intron	ENST00000438806	ENST00000369044		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-3CDS	ENST00000466057	ENST00000369046		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-intron	ENST00000466057	ENST00000467262		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
intron-intron	ENST00000466057	ENST00000369044		ChiTaRS3.1			CK902891	PNISR	chr6	99860426	-	QRSL1	chr6	107100080	+
5CDS-3UTR	ENST00000371146	ENST00000371146		ChiTaRS3.1			BG291031	USP1	chr1	62916565	-	USP1	chr1	62917055	+
5CDS-3UTR	ENST00000371146	ENST00000339950		ChiTaRS3.1			BG291031	USP1	chr1	62916565	-	USP1	chr1	62917055	+
5CDS-3UTR	ENST00000339950	ENST00000371146		ChiTaRS3.1			BG291031	USP1	chr1	62916565	-	USP1	chr1	62917055	+
5CDS-3UTR	ENST00000339950	ENST00000339950		ChiTaRS3.1			BG291031	USP1	chr1	62916565	-	USP1	chr1	62917055	+
intron-intron	ENST00000318560	ENST00000305877		ChiTaRS3.1			JQ425252	ABL1	chr9	133611321	+	BCR	chr22	23632429	+
intron-intron	ENST00000318560	ENST00000359540		ChiTaRS3.1			JQ425252	ABL1	chr9	133611321	+	BCR	chr22	23632429	+
intron-intron	ENST00000318560	ENST00000398512		ChiTaRS3.1			JQ425252	ABL1	chr9	133611321	+	BCR	chr22	23632429	+
intron-intron	ENST00000318560	ENST00000436990		ChiTaRS3.1			JQ425252	ABL1	chr9	133611321	+	BCR	chr22	23632429	+
intron-3CDS	ENST00000408388	ENST00000396024		ChiTaRS3.1			AK126411	PVT1	chr8	128832547	+	ANXA2	chr15	60643445	-
intron-3CDS	ENST00000408388	ENST00000451270		ChiTaRS3.1			AK126411	PVT1	chr8	128832547	+	ANXA2	chr15	60643445	-
intron-3CDS	ENST00000408388	ENST00000332680		ChiTaRS3.1			AK126411	PVT1	chr8	128832547	+	ANXA2	chr15	60643445	-
intron-3CDS	ENST00000408388	ENST00000421017		ChiTaRS3.1			AK126411	PVT1	chr8	128832547	+	ANXA2	chr15	60643445	-
intron-intron	ENST00000408388	ENST00000557937		ChiTaRS3.1			AK126411	PVT1	chr8	128832547	+	ANXA2	chr15	60643445	-
intron-intron	ENST00000370918	ENST00000237247		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371039		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371035		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000468286		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371036		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371037		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000435165		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000237247		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371039		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371035		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000468286		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371036		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371037		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000435165		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000237247		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371039		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371035		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000468286		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371036		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371037		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000435165		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000237247		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371039		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371035		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000468286		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371036		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371037		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000435165		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000237247		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371039		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371035		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000468286		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371036		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371037		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000435165		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000237247		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371039		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371035		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000468286		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371036		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371037		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000435165		ChiTaRS3.1			BE929601	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000437508	ENST00000398519		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-5UTR	ENST00000437508	ENST00000314028		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-5UTR	ENST00000437508	ENST00000392334		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-intron	ENST00000437508	ENST00000578904		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-intron	ENST00000494872	ENST00000398519		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-5UTR	ENST00000494872	ENST00000314028		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-5UTR	ENST00000494872	ENST00000392334		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-intron	ENST00000494872	ENST00000578904		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-intron	ENST00000338700	ENST00000398519		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-5UTR	ENST00000338700	ENST00000314028		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-5UTR	ENST00000338700	ENST00000392334		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-intron	ENST00000338700	ENST00000578904		ChiTaRS3.1			U29171	TRIM2	chr4	154198376	-	CSNK1D	chr17	80231317	-
intron-intron	ENST00000378289	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378289	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378289	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000453695	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000453695	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378246	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378246	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000357717	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000357717	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378278	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378278	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000396817	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000396817	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378254	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378254	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378255	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378255	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378249	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378249	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378258	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378258	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000378242	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000378242	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378289		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000453695		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378246		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000357717		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378278		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000396817		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378254		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378255		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378249		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378258		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000492201	ENST00000378242		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-5UTR	ENST00000492201	ENST00000492201		ChiTaRS3.1			AA558011	DCLRE1C	chr10	14951196	+	DCLRE1C	chr10	14951037	-
intron-intron	ENST00000464611	ENST00000313367		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000431825		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000352860		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000353930		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000396431		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000409069		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000396429		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000464611	ENST00000487020		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000313367		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000431825		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000352860		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000353930		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000396431		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000409069		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000396429		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000331789	ENST00000487020		ChiTaRS3.1			AW949281	ACTB	chr7	5567263	-	OSBPL3	chr7	24969581	-
intron-intron	ENST00000307179	ENST00000560955		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000307179	ENST00000313478		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000307179	ENST00000561443		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000433963	ENST00000560955		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000433963	ENST00000313478		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000433963	ENST00000561443		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000396444	ENST00000560955		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000396444	ENST00000313478		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000396444	ENST00000561443		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000425032	ENST00000560955		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000425032	ENST00000313478		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000425032	ENST00000561443		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000558892	ENST00000560955		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000558892	ENST00000313478		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
intron-intron	ENST00000558892	ENST00000561443		ChiTaRS3.1			BQ881111	USP8	chr15	50786927	+	TRPM7	chr15	50893589	-
3UTR-3CDS	ENST00000392335	ENST00000392335		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000535612		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000269932		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000546344		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000392336		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000392335		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000535612		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000269932		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000546344		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000392336		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000392335		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000535612		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000269932		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000546344		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000392336		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000392335		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000535612		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000269932		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000546344		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000392336		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000392335		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000535612		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000269932		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000546344		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000392336		ChiTaRS3.1			CB164781	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-intron	ENST00000445193	ENST00000585748		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
3UTR-intron	ENST00000445193	ENST00000326873		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000477305	ENST00000585748		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000477305	ENST00000326873		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
3UTR-intron	ENST00000295959	ENST00000585748		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
3UTR-intron	ENST00000295959	ENST00000326873		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000466547	ENST00000585748		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000466547	ENST00000326873		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000528153	ENST00000585748		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000528153	ENST00000326873		ChiTaRS3.1			AI968661	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000570137	ENST00000570137		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000570137	ENST00000562812		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000570137	ENST00000566173		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000570137	ENST00000563890		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000570137	ENST00000562753		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562812	ENST00000570137		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562812	ENST00000562812		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562812	ENST00000566173		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562812	ENST00000563890		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562812	ENST00000562753		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000566173	ENST00000570137		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000566173	ENST00000562812		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000566173	ENST00000566173		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000566173	ENST00000563890		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000566173	ENST00000562753		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000563890	ENST00000570137		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000563890	ENST00000562812		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000563890	ENST00000566173		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000563890	ENST00000563890		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000563890	ENST00000562753		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562753	ENST00000570137		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562753	ENST00000562812		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562753	ENST00000566173		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562753	ENST00000563890		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000562753	ENST00000562753		ChiTaRS3.1			AA527971	CDYL2	chr16	80835816	+	CDYL2	chr16	80821648	+
intron-intron	ENST00000262097	ENST00000382952		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000262097	ENST00000290921		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000262097	ENST00000510568		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000262097	ENST00000515690		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000381733	ENST00000382952		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000381733	ENST00000290921		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000381733	ENST00000510568		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000381733	ENST00000515690		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000417108	ENST00000382952		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000417108	ENST00000290921		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000417108	ENST00000510568		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000417108	ENST00000515690		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520781	ENST00000382952		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520781	ENST00000290921		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520781	ENST00000510568		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520781	ENST00000515690		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000314146	ENST00000382952		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000314146	ENST00000290921		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000314146	ENST00000510568		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000314146	ENST00000515690		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520051	ENST00000382952		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520051	ENST00000290921		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520051	ENST00000510568		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
intron-intron	ENST00000520051	ENST00000515690		ChiTaRS3.1			BF988401	ASAH1	chr8	17923419	+	CTBP1	chr4	1237036	-
5CDS-3UTR	ENST00000301744	ENST00000472413		ChiTaRS3.1			BC063821	ZNF597	chr16	3490804	-	NPIPA1	chr16	15026427	+
5CDS-intron	ENST00000301744	ENST00000328085		ChiTaRS3.1			BC063821	ZNF597	chr16	3490804	-	NPIPA1	chr16	15026427	+
intron-intron	ENST00000393446	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393446	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000265437	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000265437	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393451	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393451	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393449	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393449	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000323984	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000323984	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000432298	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000432298	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000422922	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000422922	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000487459	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000487459	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393443	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393443	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393447	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393447	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393444	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000393444	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000465133	ENST00000425792		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
intron-intron	ENST00000465133	ENST00000396703		ChiTaRS3.1			BQ348071	ST7	chr7	116628236	-	UBE2E2	chr3	23315962	-
5CDS-intron	ENST00000574590	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000574590	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000575318	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000572904	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000262419	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5CDS-intron	ENST00000432791	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
5UTR-intron	ENST00000393476	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000445552		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000337845		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000329240		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000573185		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000570550		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000336125		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000549904		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000550273		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000549665		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
intron-intron	ENST00000576248	ENST00000553155		ChiTaRS3.1			BC006271	KANSL1	chr17	44171924	-	ARL17A	chr17	400398	+
3UTR-3UTR	ENST00000266712	ENST00000266712		ChiTaRS3.1			AA747891	TMTC3	chr12	88592648	+	TMTC3	chr12	88592712	-
intron-3UTR	ENST00000295065	ENST00000534336		ChiTaRS3.1			BF800801	MEMO1	chr2	32191067	+	MALAT1	chr11	65267458	+
intron-3UTR	ENST00000379383	ENST00000534336		ChiTaRS3.1			BF800801	MEMO1	chr2	32191067	+	MALAT1	chr11	65267458	+
intron-3UTR	ENST00000404530	ENST00000534336		ChiTaRS3.1			BF800801	MEMO1	chr2	32191067	+	MALAT1	chr11	65267458	+
intron-3UTR	ENST00000490459	ENST00000534336		ChiTaRS3.1			BF800801	MEMO1	chr2	32191067	+	MALAT1	chr11	65267458	+
intron-3UTR	ENST00000426310	ENST00000534336		ChiTaRS3.1			BF800801	MEMO1	chr2	32191067	+	MALAT1	chr11	65267458	+
intron-3UTR	ENST00000407893	ENST00000534336		ChiTaRS3.1			BF800801	MEMO1	chr2	32191067	+	MALAT1	chr11	65267458	+
3UTR-intron	ENST00000405995	ENST00000405995		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000405995	ENST00000357304		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000405995	ENST00000458550		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000405995	ENST00000372249		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000405995	ENST00000465931		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000357304	ENST00000405995		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000357304	ENST00000357304		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000357304	ENST00000458550		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000357304	ENST00000372249		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000357304	ENST00000465931		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000458550	ENST00000405995		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000458550	ENST00000357304		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000458550	ENST00000458550		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000458550	ENST00000372249		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000458550	ENST00000465931		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000372249	ENST00000405995		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000372249	ENST00000357304		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000372249	ENST00000458550		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000372249	ENST00000372249		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
intron-intron	ENST00000372249	ENST00000465931		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000465931	ENST00000405995		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000465931	ENST00000357304		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000465931	ENST00000458550		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000465931	ENST00000372249		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-intron	ENST00000465931	ENST00000465931		ChiTaRS3.1			BI603391	PRRC2B	chr9	134375565	+	PRRC2B	chr1	200392856	-
3UTR-3CDS	ENST00000301332	ENST00000367255		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000356820		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000423061		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000448038		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000341594		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000265368		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000367253		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000367248		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000413186		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000466159		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000539504		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000347037		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000354674		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301332	ENST00000495090		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-3CDS	ENST00000301331	ENST00000367255		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000356820		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000423061		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000448038		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000341594		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000265368		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000367253		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000367248		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000413186		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000466159		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000539504		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000347037		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000354674		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
3UTR-intron	ENST00000301331	ENST00000495090		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-3CDS	ENST00000531423	ENST00000367255		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000356820		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000423061		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000448038		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000341594		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000265368		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000367253		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000367248		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000413186		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000466159		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000539504		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000347037		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000354674		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000531423	ENST00000495090		ChiTaRS3.1			DB297961	KIFC2	chr8	145699171	-	SYNE1	chr6	152712465	+
intron-intron	ENST00000313654	ENST00000397752		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000313654	ENST00000318493		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000313654	ENST00000436117		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000313654	ENST00000495962		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000313654	ENST00000539704		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000399516	ENST00000397752		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000399516	ENST00000318493		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000399516	ENST00000436117		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000399516	ENST00000495962		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000399516	ENST00000539704		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000269217	ENST00000397752		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000269217	ENST00000318493		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000269217	ENST00000436117		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000269217	ENST00000495962		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000269217	ENST00000539704		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000587184	ENST00000397752		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000587184	ENST00000318493		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000587184	ENST00000436117		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000587184	ENST00000495962		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
5CDS-intron	ENST00000587184	ENST00000539704		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000588770	ENST00000397752		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000588770	ENST00000318493		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000588770	ENST00000436117		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000588770	ENST00000495962		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-intron	ENST00000588770	ENST00000539704		ChiTaRS3.1			BE142651	LAMA3	chr18	21453053	+	MET	chr7	116326830	-
intron-3CDS	ENST00000332050	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000371564		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000396009		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000609943		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000610033		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000414705		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000609507		ChiTaRS3.1			FJ573260	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3UTR	ENST00000521425	ENST00000356415		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521425	ENST00000436150		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521425	ENST00000369709		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-intron	ENST00000521425	ENST00000545460		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521425	ENST00000494982		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000262213	ENST00000356415		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000262213	ENST00000436150		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000262213	ENST00000369709		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-intron	ENST00000262213	ENST00000545460		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000262213	ENST00000494982		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000536748	ENST00000356415		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000536748	ENST00000436150		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000536748	ENST00000369709		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-intron	ENST00000536748	ENST00000545460		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000536748	ENST00000494982		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521049	ENST00000356415		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521049	ENST00000436150		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521049	ENST00000369709		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-intron	ENST00000521049	ENST00000545460		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
intron-3UTR	ENST00000521049	ENST00000494982		ChiTaRS3.1			AI207431	TRAM1	chr8	71516296	+	RAP1A	chr1	112255277	+
3UTR-intron	ENST00000422514	ENST00000282469		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000422514	ENST00000509059		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000422514	ENST00000356031		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000422514	ENST00000440995		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000422514	ENST00000303129		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000496182	ENST00000282469		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000496182	ENST00000509059		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000496182	ENST00000356031		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000496182	ENST00000440995		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000496182	ENST00000303129		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000394938	ENST00000282469		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000394938	ENST00000509059		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000394938	ENST00000356031		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000394938	ENST00000440995		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000394938	ENST00000303129		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000472628	ENST00000282469		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000472628	ENST00000509059		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000472628	ENST00000356031		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000472628	ENST00000440995		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-intron	ENST00000472628	ENST00000303129		ChiTaRS3.1			AW090311	RPL23A	chr17	27050908	-	SPEF2	chr5	35651862	-
3UTR-3UTR	ENST00000538486	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000538486	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000538486	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000538486	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000538486	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000538486	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000538486	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000538486	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000538486	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000538486	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000397323	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000397323	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000397323	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000397323	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000397323	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000397323	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000397323	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000397323	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000397323	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000397323	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000320203	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000320203	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000320203	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000320203	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000320203	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000320203	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000320203	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000320203	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000320203	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000320203	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000287771	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000287771	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000287771	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-3UTR	ENST00000287771	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000287771	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000287771	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000287771	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000287771	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000287771	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
3UTR-intron	ENST00000287771	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000339877	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000339877	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000339877	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000339877	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000339877	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000339877	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000339877	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000339877	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000339877	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000339877	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000517860	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000517860	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000517860	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000517860	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000517860	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000517860	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000517860	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000517860	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000517860	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000517860	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520161	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520161	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520161	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520161	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520161	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520161	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520161	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520161	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520161	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520161	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000519647	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000519647	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000519647	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000519647	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000519647	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000519647	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000519647	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000519647	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000519647	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000519647	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520191	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520191	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520191	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520191	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520191	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520191	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520191	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520191	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520191	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520191	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520916	ENST00000538486		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520916	ENST00000397323		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520916	ENST00000320203		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-3UTR	ENST00000520916	ENST00000287771		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520916	ENST00000339877		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520916	ENST00000517860		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520916	ENST00000520161		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520916	ENST00000519647		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520916	ENST00000520191		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000520916	ENST00000520916		ChiTaRS3.1			BE002581	RBPMS	chr8	30428720	-	RBPMS	chr8	30428598	+
intron-intron	ENST00000534358	ENST00000262958		ChiTaRS3.1			AY839731	KMT2A	chr11	118358051	+	GNA15	chr19	3157650	-
intron-intron	ENST00000389506	ENST00000262958		ChiTaRS3.1			AY839731	KMT2A	chr11	118358051	+	GNA15	chr19	3157650	-
intron-intron	ENST00000354520	ENST00000262958		ChiTaRS3.1			AY839731	KMT2A	chr11	118358051	+	GNA15	chr19	3157650	-
intron-intron	ENST00000420751	ENST00000262958		ChiTaRS3.1			AY839731	KMT2A	chr11	118358051	+	GNA15	chr19	3157650	-
intron-5UTR	ENST00000467021	ENST00000518836		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
intron-5UTR	ENST00000467021	ENST00000313708		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
intron-5UTR	ENST00000467021	ENST00000380654		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
intron-5UTR	ENST00000467021	ENST00000517373		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
5CDS-5UTR	ENST00000367874	ENST00000518836		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
5CDS-5UTR	ENST00000367874	ENST00000313708		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
5CDS-5UTR	ENST00000367874	ENST00000380654		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
5CDS-5UTR	ENST00000367874	ENST00000517373		ChiTaRS3.1			CD701001	TADA1	chr1	166845395	-	EBF1	chr5	158267118	-
5CDS-intron	ENST00000371018	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371018	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371018	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371018	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371018	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355977	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355977	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355977	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355977	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355977	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000357692	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000357692	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000357692	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000357692	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000357692	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401041	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401041	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401041	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401041	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401041	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371016	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371016	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371016	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371016	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371016	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371014	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371014	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371014	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371014	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000371014	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
intron-intron	ENST00000371012	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
intron-intron	ENST00000371012	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
intron-intron	ENST00000371012	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
intron-intron	ENST00000371012	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
intron-intron	ENST00000371012	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401042	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401042	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401042	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401042	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000401042	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355356	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355356	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355356	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355356	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000355356	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000479067	ENST00000358155		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000479067	ENST00000367733		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000479067	ENST00000355305		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000479067	ENST00000367731		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000479067	ENST00000520906		ChiTaRS3.1			BF770401	MIER1	chr1	67425427	+	DNM3	chr1	172065517	+
5CDS-intron	ENST00000394997	ENST00000380550		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000394997	ENST00000398395		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000394997	ENST00000380567		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000394997	ENST00000340096		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000394997	ENST00000490265		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000337138	ENST00000380550		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000337138	ENST00000398395		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000337138	ENST00000380567		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000337138	ENST00000340096		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000337138	ENST00000490265		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000323441	ENST00000380550		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000323441	ENST00000398395		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000323441	ENST00000380567		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000323441	ENST00000340096		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000323441	ENST00000490265		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000557538	ENST00000380550		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000557538	ENST00000398395		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000557538	ENST00000380567		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000557538	ENST00000340096		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000557538	ENST00000490265		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000539097	ENST00000380550		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000539097	ENST00000398395		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000539097	ENST00000380567		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000539097	ENST00000340096		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
5CDS-intron	ENST00000539097	ENST00000490265		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000557206	ENST00000380550		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000557206	ENST00000398395		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000557206	ENST00000380567		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000557206	ENST00000340096		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000557206	ENST00000490265		ChiTaRS3.1			CD656091	HIF1A	chr14	62212432	+	OFD1	chrX	13755171	+
intron-intron	ENST00000412050	ENST00000412050		ChiTaRS3.1			DW462381	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-intron	ENST00000412050	ENST00000265997		ChiTaRS3.1			DW462381	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-intron	ENST00000265997	ENST00000412050		ChiTaRS3.1			DW462381	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-intron	ENST00000265997	ENST00000265997		ChiTaRS3.1			DW462381	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-3UTR	ENST00000509479	ENST00000394071		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-3UTR	ENST00000509479	ENST00000286523		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-intron	ENST00000509479	ENST00000486739		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-3UTR	ENST00000327122	ENST00000394071		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-3UTR	ENST00000327122	ENST00000286523		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-intron	ENST00000327122	ENST00000486739		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-3UTR	ENST00000398940	ENST00000394071		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-3UTR	ENST00000398940	ENST00000286523		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-intron	ENST00000398940	ENST00000486739		ChiTaRS3.1			AW168571	MAML3	chr4	140725004	-	ELMSAN1	chr14	74183531	+
intron-intron	ENST00000368811	ENST00000323064		ChiTaRS3.1			BQ276611	S100A10	chr1	151955697	-	AGBL5	chr2	27293549	-
intron-intron	ENST00000368811	ENST00000360131		ChiTaRS3.1			BQ276611	S100A10	chr1	151955697	-	AGBL5	chr2	27293549	-
intron-intron	ENST00000368809	ENST00000323064		ChiTaRS3.1			BQ276611	S100A10	chr1	151955697	-	AGBL5	chr2	27293549	-
intron-intron	ENST00000368809	ENST00000360131		ChiTaRS3.1			BQ276611	S100A10	chr1	151955697	-	AGBL5	chr2	27293549	-
intron-intron	ENST00000478574	ENST00000323064		ChiTaRS3.1			BQ276611	S100A10	chr1	151955697	-	AGBL5	chr2	27293549	-
intron-intron	ENST00000478574	ENST00000360131		ChiTaRS3.1			BQ276611	S100A10	chr1	151955697	-	AGBL5	chr2	27293549	-
intron-3CDS	ENST00000222005	ENST00000222005		ChiTaRS3.1			BI464991	CDC37	chr19	10502015	-	CDC37	chr19	10506823	-
Frame-shit	ENST00000402291	ENST00000402291		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000402291	ENST00000356719		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000402291	ENST00000295031		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000402291	ENST00000453873		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000402291	ENST00000482513		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000402291		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000356719		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000295031		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000453873		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000356719	ENST00000482513		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000402291		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000356719		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000295031		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000453873		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000295031	ENST00000482513		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000402291		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000356719		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000295031		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000453873		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000453873	ENST00000482513		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000402291		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000356719		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000295031		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000453873		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-intron	ENST00000482513	ENST00000482513		ChiTaRS3.1			AW301931	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
3UTR-intron	ENST00000266077	ENST00000193029		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000522874		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000361847		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000524214		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000561150		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000517966		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000523231		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000524370		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-5UTR	ENST00000266077	ENST00000522867		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000520266		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000519058		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000266077	ENST00000522534		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000193029		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000522874		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000361847		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000524214		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000561150		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000517966		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000523231		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000524370		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-5UTR	ENST00000493772	ENST00000522867		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000520266		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000519058		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
3UTR-intron	ENST00000493772	ENST00000522534		ChiTaRS3.1			BF197331	SLC2A4RG	chr20	62374723	-	MOK	chr14	102699386	+
intron-intron	ENST00000252486	ENST00000505658		ChiTaRS3.1			AI147021	APOE	chr19	45411556	-	LUC7L3	chr17	48808031	-
intron-intron	ENST00000252486	ENST00000393227		ChiTaRS3.1			AI147021	APOE	chr19	45411556	-	LUC7L3	chr17	48808031	-
intron-intron	ENST00000252486	ENST00000311571		ChiTaRS3.1			AI147021	APOE	chr19	45411556	-	LUC7L3	chr17	48808031	-
intron-intron	ENST00000252486	ENST00000240304		ChiTaRS3.1			AI147021	APOE	chr19	45411556	-	LUC7L3	chr17	48808031	-
intron-intron	ENST00000252486	ENST00000544170		ChiTaRS3.1			AI147021	APOE	chr19	45411556	-	LUC7L3	chr17	48808031	-
intron-intron	ENST00000252486	ENST00000503798		ChiTaRS3.1			AI147021	APOE	chr19	45411556	-	LUC7L3	chr17	48808031	-
intron-intron	ENST00000539068	ENST00000601804		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000539068	ENST00000334197		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000539068	ENST00000452676		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000539068	ENST00000601469		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000536438	ENST00000601804		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000536438	ENST00000334197		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000536438	ENST00000452676		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000536438	ENST00000601469		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000357266	ENST00000601804		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000357266	ENST00000334197		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000357266	ENST00000452676		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000357266	ENST00000601469		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000540787	ENST00000601804		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000540787	ENST00000334197		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000540787	ENST00000452676		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000540787	ENST00000601469		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000542713	ENST00000601804		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000542713	ENST00000334197		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000542713	ENST00000452676		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-intron	ENST00000542713	ENST00000601469		ChiTaRS3.1			BF927881	FKBP5	chr6	35585552	+	ZNF347	chr19	53644572	+
intron-3CDS	ENST00000421182	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000421182	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000421182	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000421182	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357867	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000357867	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000357867	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000323926	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000323926	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000323926	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000336916	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000336916	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000336916	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000354785	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000354785	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000354785	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000357009	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000357009	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000357009	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000346544	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000346544	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000346544	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000345488	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000345488	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000345488	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000359671	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000359671	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000359671	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000446046	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000446046	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000446046	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000443816	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000443816	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000443816	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000432072	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000432072	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000432072	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000356005	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000356005	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000356005	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000490833	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000490833	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000490833	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000421182		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000357867		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000323926		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000336916		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000354785		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000357009		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000346544		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000345488		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000359671		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000446046		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000443816		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000432072		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-3CDS	ENST00000426059	ENST00000356005		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000426059	ENST00000490833		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
intron-intron	ENST00000426059	ENST00000426059		ChiTaRS3.1			CN484091	FN1	chr2	216249681	-	FN1	chr2	216300454	-
Frame-shit	ENST00000321153	ENST00000425759		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000321153	ENST00000292733		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000321153	ENST00000542773		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000321153	ENST00000263205		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000321153	ENST00000406969		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000321153	ENST00000382974		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000321153	ENST00000541476		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
5CDS-3UTR	ENST00000321153	ENST00000478831		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000425759		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000292733		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000542773		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000263205		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000406969		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000382974		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3CDS	ENST00000532004	ENST00000541476		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
3UTR-3UTR	ENST00000532004	ENST00000478831		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000425759		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000292733		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000542773		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000263205		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000406969		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000382974		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
Frame-shit	ENST00000530797	ENST00000541476		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
5CDS-3UTR	ENST00000530797	ENST00000478831		ChiTaRS3.1			DB193761	RPLP2	chr11	811645	+	MED15	chr22	20922848	+
intron-intron	ENST00000274456	ENST00000274456		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000274456	ENST00000513374		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000274456	ENST00000504771		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000274456	ENST00000503646		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000274456	ENST00000504642		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000274456	ENST00000415806		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000513374	ENST00000274456		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000513374	ENST00000513374		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000513374	ENST00000504771		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000513374	ENST00000503646		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000513374	ENST00000504642		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000513374	ENST00000415806		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504771	ENST00000274456		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504771	ENST00000513374		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504771	ENST00000504771		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504771	ENST00000503646		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504771	ENST00000504642		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504771	ENST00000415806		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000503646	ENST00000274456		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000503646	ENST00000513374		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000503646	ENST00000504771		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000503646	ENST00000503646		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000503646	ENST00000504642		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000503646	ENST00000415806		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504642	ENST00000274456		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504642	ENST00000513374		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504642	ENST00000504771		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504642	ENST00000503646		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504642	ENST00000504642		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000504642	ENST00000415806		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000415806	ENST00000274456		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000415806	ENST00000513374		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000415806	ENST00000504771		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000415806	ENST00000503646		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000415806	ENST00000504642		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
intron-intron	ENST00000415806	ENST00000415806		ChiTaRS3.1			BF898691	TNFAIP8	chr5	118671074	-	TNFAIP8	chr5	118671036	+
3UTR-3CDS	ENST00000002125	ENST00000331825		ChiTaRS3.1			AF116671	NDUFAF7	chr2	37475944	+	FTL	chr19	49469952	-
3UTR-3CDS	ENST00000336237	ENST00000331825		ChiTaRS3.1			AF116671	NDUFAF7	chr2	37475944	+	FTL	chr19	49469952	-
intron-3CDS	ENST00000483999	ENST00000331825		ChiTaRS3.1			AF116671	NDUFAF7	chr2	37475944	+	FTL	chr19	49469952	-
intron-intron	ENST00000253861	ENST00000324331		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000253861	ENST00000274680		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000539845	ENST00000324331		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000539845	ENST00000274680		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000393161	ENST00000324331		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000393161	ENST00000274680		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000545148	ENST00000324331		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000545148	ENST00000274680		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000460346	ENST00000324331		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000460346	ENST00000274680		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000541309	ENST00000324331		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000541309	ENST00000274680		ChiTaRS3.1			S63396	EXOC4	chr7	133148742	+	FARS2	chr6	5725792	-
intron-intron	ENST00000216487	ENST00000216487		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000216487	ENST00000418924		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000216487	ENST00000557762		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000418924	ENST00000216487		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000418924	ENST00000418924		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000418924	ENST00000557762		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000557762	ENST00000216487		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000557762	ENST00000418924		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000557762	ENST00000557762		ChiTaRS3.1			BG013791	RIN3	chr14	93132496	+	RIN3	chr14	93132849	-
intron-intron	ENST00000414241	ENST00000384994		ChiTaRS3.1			BE926051	RBBP4	chr1	33121337	-	NEAT1	chr11	65195738	+
intron-intron	ENST00000373493	ENST00000384994		ChiTaRS3.1			BE926051	RBBP4	chr1	33121337	-	NEAT1	chr11	65195738	+
intron-intron	ENST00000524393	ENST00000384994		ChiTaRS3.1			BE926051	RBBP4	chr1	33121337	-	NEAT1	chr11	65195738	+
intron-intron	ENST00000544435	ENST00000384994		ChiTaRS3.1			BE926051	RBBP4	chr1	33121337	-	NEAT1	chr11	65195738	+
intron-intron	ENST00000373485	ENST00000384994		ChiTaRS3.1			BE926051	RBBP4	chr1	33121337	-	NEAT1	chr11	65195738	+
intron-intron	ENST00000458695	ENST00000384994		ChiTaRS3.1			BE926051	RBBP4	chr1	33121337	-	NEAT1	chr11	65195738	+
intron-3CDS	ENST00000540011	ENST00000331817		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3UTR	ENST00000540011	ENST00000552322		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3CDS	ENST00000330210	ENST00000331817		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3UTR	ENST00000330210	ENST00000552322		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3CDS	ENST00000427468	ENST00000331817		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3UTR	ENST00000427468	ENST00000552322		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3CDS	ENST00000446149	ENST00000331817		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3UTR	ENST00000446149	ENST00000552322		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3CDS	ENST00000373048	ENST00000331817		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3UTR	ENST00000373048	ENST00000552322		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3CDS	ENST00000319637	ENST00000331817		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
intron-3UTR	ENST00000319637	ENST00000552322		ChiTaRS3.1			BQ344001	EPHA10	chr1	38222254	-	KRT7	chr12	52642472	-
5UTR-intron	ENST00000338677	ENST00000446488		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000338677	ENST00000304521		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000338677	ENST00000524794		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000338677	ENST00000524746		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000338677	ENST00000526940		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000267938	ENST00000446488		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000267938	ENST00000304521		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000267938	ENST00000524794		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000267938	ENST00000524746		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000267938	ENST00000526940		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000569423	ENST00000446488		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000569423	ENST00000304521		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000569423	ENST00000524794		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000569423	ENST00000524746		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
5UTR-intron	ENST00000569423	ENST00000526940		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000561851	ENST00000446488		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000561851	ENST00000304521		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000561851	ENST00000524794		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000561851	ENST00000524746		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000561851	ENST00000526940		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000562635	ENST00000446488		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000562635	ENST00000304521		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000562635	ENST00000524794		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000562635	ENST00000524746		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-intron	ENST00000562635	ENST00000526940		ChiTaRS3.1			U08191	UBE2Q2	chr15	76135829	-	NFRKB	chr11	129765452	-
intron-3CDS	ENST00000323274	ENST00000331456		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000323274	ENST00000469027		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000323274	ENST00000473863		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-3CDS	ENST00000323250	ENST00000331456		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000323250	ENST00000469027		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000323250	ENST00000473863		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-3CDS	ENST00000323224	ENST00000331456		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000323224	ENST00000469027		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000323224	ENST00000473863		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-3CDS	ENST00000581920	ENST00000331456		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000581920	ENST00000469027		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000581920	ENST00000473863		ChiTaRS3.1			DB026411	TYMS	chr18	661092	+	TRAIP	chr3	49879334	-
intron-intron	ENST00000367463	ENST00000607772		ChiTaRS3.1			DA572991	UST	chr6	149203302	+	CNKSR3	chr6	154778592	-
intron-intron	ENST00000367463	ENST00000479339		ChiTaRS3.1			DA572991	UST	chr6	149203302	+	CNKSR3	chr6	154778592	-
intron-intron	ENST00000367463	ENST00000433165		ChiTaRS3.1			DA572991	UST	chr6	149203302	+	CNKSR3	chr6	154778592	-
intron-intron	ENST00000466695	ENST00000607772		ChiTaRS3.1			DA572991	UST	chr6	149203302	+	CNKSR3	chr6	154778592	-
intron-intron	ENST00000466695	ENST00000479339		ChiTaRS3.1			DA572991	UST	chr6	149203302	+	CNKSR3	chr6	154778592	-
intron-intron	ENST00000466695	ENST00000433165		ChiTaRS3.1			DA572991	UST	chr6	149203302	+	CNKSR3	chr6	154778592	-
intron-3CDS	ENST00000273390	ENST00000515683		ChiTaRS3.1			AW840721	MAATS1	chr3	119521106	+	ADH1C	chr4	100260861	-
intron-intron	ENST00000273390	ENST00000510055		ChiTaRS3.1			AW840721	MAATS1	chr3	119521106	+	ADH1C	chr4	100260861	-
intron-3CDS	ENST00000463700	ENST00000515683		ChiTaRS3.1			AW840721	MAATS1	chr3	119521106	+	ADH1C	chr4	100260861	-
intron-intron	ENST00000463700	ENST00000510055		ChiTaRS3.1			AW840721	MAATS1	chr3	119521106	+	ADH1C	chr4	100260861	-
intron-3CDS	ENST00000472117	ENST00000515683		ChiTaRS3.1			AW840721	MAATS1	chr3	119521106	+	ADH1C	chr4	100260861	-
intron-intron	ENST00000472117	ENST00000510055		ChiTaRS3.1			AW840721	MAATS1	chr3	119521106	+	ADH1C	chr4	100260861	-
3UTR-3CDS	ENST00000534336	ENST00000450554		ChiTaRS3.1			BF508321	MALAT1	chr11	65269224	+	U2AF2	chr19	56185313	+
3UTR-3CDS	ENST00000534336	ENST00000308924		ChiTaRS3.1			BF508321	MALAT1	chr11	65269224	+	U2AF2	chr19	56185313	+
3UTR-3CDS	ENST00000534336	ENST00000590551		ChiTaRS3.1			BF508321	MALAT1	chr11	65269224	+	U2AF2	chr19	56185313	+
intron-intron	ENST00000382199	ENST00000382199		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000421047		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000457616		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000346192		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000382199	ENST00000494906		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000382199		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000421047		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000457616		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000346192		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000421047	ENST00000494906		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000382199		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000421047		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000457616		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000346192		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000457616	ENST00000494906		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000382199		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000421047		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000457616		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000346192		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000346192	ENST00000494906		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000382199		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000421047		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000457616		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000346192		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
intron-intron	ENST00000494906	ENST00000494906		ChiTaRS3.1			N99491	IGF2BP2	chr3	185445145	-	IGF2BP2	chr3	185445977	-
3UTR-intron	ENST00000381151	ENST00000314675		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000374223		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000357089		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000374221		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000374217		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000374222		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000535108		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000381151	ENST00000436301		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000314675		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000374223		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000357089		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000374221		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000374217		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000374222		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000535108		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
3UTR-intron	ENST00000608209	ENST00000436301		ChiTaRS3.1			BG991801	SLC5A3	chr21	35474464	-	UBXN11	chr1	26630361	-
intron-3CDS	ENST00000362042	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000362042	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000362042	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000362042	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000362042	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000362042	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000362042	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000585291	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000585291	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000585291	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000585291	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000585291	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000585291	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000585291	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000357480	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000357480	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000357480	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000357480	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000357480	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000357480	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000357480	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000361665	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000361665	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000361665	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000361665	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000361665	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000361665	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000361665	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000579481	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000579481	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000579481	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000579481	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000579481	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000579481	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000579481	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000582155	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000582155	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000582155	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000582155	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000582155	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000582155	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000582155	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000583378	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000583378	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000583378	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000583378	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000583378	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000583378	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000583378	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000536222	ENST00000591462		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000536222	ENST00000252455		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000536222	ENST00000412601		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000536222	ENST00000592741		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000536222	ENST00000587327		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-3CDS	ENST00000536222	ENST00000589838		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000536222	ENST00000591510		ChiTaRS3.1			BI001011	NFE2L1	chr17	46133531	+	PRKCSH	chr19	11553215	+
intron-intron	ENST00000252674	ENST00000252674		ChiTaRS3.1			CN478611	MLLT1	chr19	6210562	+	MLLT1	chr19	6210736	-
intron-intron	ENST00000252674	ENST00000585588		ChiTaRS3.1			CN478611	MLLT1	chr19	6210562	+	MLLT1	chr19	6210736	-
intron-intron	ENST00000585588	ENST00000252674		ChiTaRS3.1			CN478611	MLLT1	chr19	6210562	+	MLLT1	chr19	6210736	-
intron-intron	ENST00000585588	ENST00000585588		ChiTaRS3.1			CN478611	MLLT1	chr19	6210562	+	MLLT1	chr19	6210736	-
3UTR-3UTR	ENST00000361866	ENST00000361866		ChiTaRS3.1			AW577211	COL6A1	chr21	47424555	-	COL6A1	chr21	47424027	+
3UTR-3UTR	ENST00000361866	ENST00000498614		ChiTaRS3.1			AW577211	COL6A1	chr21	47424555	-	COL6A1	chr21	47424027	+
3UTR-3UTR	ENST00000498614	ENST00000361866		ChiTaRS3.1			AW577211	COL6A1	chr21	47424555	-	COL6A1	chr21	47424027	+
3UTR-3UTR	ENST00000498614	ENST00000498614		ChiTaRS3.1			AW577211	COL6A1	chr21	47424555	-	COL6A1	chr21	47424027	+
3UTR-3UTR	ENST00000272102	ENST00000272102		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000272102	ENST00000540651		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000272102	ENST00000478424		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000272102	ENST00000541182		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000540651	ENST00000272102		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000540651	ENST00000540651		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000540651	ENST00000478424		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000540651	ENST00000541182		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
intron-3UTR	ENST00000478424	ENST00000272102		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
intron-3UTR	ENST00000478424	ENST00000540651		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
intron-3UTR	ENST00000478424	ENST00000478424		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
intron-3UTR	ENST00000478424	ENST00000541182		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000541182	ENST00000272102		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000541182	ENST00000540651		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000541182	ENST00000478424		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
3UTR-3UTR	ENST00000541182	ENST00000541182		ChiTaRS3.1			AL041701	ARF1	chr1	228286375	-	ARF1	chr1	228286002	+
intron-intron	ENST00000467780	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000467780	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000467780	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000467780	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467780	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000211413	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000211413	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000211413	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000211413	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000375150	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000375150	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000375150	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375150	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000375152	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000375152	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000375152	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000375152	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000488501	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000488501	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000488501	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000488501	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000451329	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000451329	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000451329	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000451329	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000445122	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000445122	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000445122	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000445122	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000552684	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000552684	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000552684	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552684	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000464188	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000464188	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000464188	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000464188	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000419655	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000419655	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000419655	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000419655	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000423671	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000423671	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000423671	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000423671	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000548904	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000548904	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000548904	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000548904	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000467781	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000467781	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000467781	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000467781	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000444466	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000444466	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000444466	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000444466	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000418753	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000418753	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000418753	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000418753	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000552325	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000552325	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000552325	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000552325	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000498282	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000498282	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000498282	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000498282	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000458719	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000458719	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000458719	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000458719	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000441129	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000441129	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000441129	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000441129	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000551213	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000551213	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000551213	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551213	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000493794	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000493794	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000493794	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000493794	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000454112	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000454112	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000454112	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000454112	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000383309	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000383309	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000383309	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000383309	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000549696	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000549696	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000549696	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000549696	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000476591	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000476591	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000476591	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000476591	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000456814	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000456814	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000456814	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000456814	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000425739	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000425739	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000425739	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000425739	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000551958	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000551958	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000551958	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000551958	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000475758	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000475758	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000475758	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000475758	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000414687	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000414687	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000414687	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000414687	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000452030	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000452030	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000452030	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000452030	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000591430		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000592575		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000547412	ENST00000585578		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000547412	ENST00000586139		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000589802		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000592392		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000547412	ENST00000590838		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000586013		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000589750		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000587121		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000588382		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-intron	ENST00000547412	ENST00000591177		ChiTaRS3.1			BE703001	PRRT1	chr6	3464136	+	ZNF571-AS1	chr19	38077488	+
intron-3UTR	ENST00000267163	ENST00000297632		ChiTaRS3.1			AI591011	RB1	chr13	48985224	+	TMEM65	chr8	125326129	-
intron-3UTR	ENST00000484879	ENST00000297632		ChiTaRS3.1			AI591011	RB1	chr13	48985224	+	TMEM65	chr8	125326129	-
intron-intron	ENST00000264360	ENST00000536252		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
intron-intron	ENST00000264360	ENST00000545103		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
intron-intron	ENST00000264360	ENST00000540348		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
intron-intron	ENST00000264360	ENST00000543944		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
intron-intron	ENST00000264360	ENST00000297661		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
intron-intron	ENST00000264360	ENST00000379186		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
intron-intron	ENST00000264360	ENST00000359544		ChiTaRS3.1			BF516551	PCDH10	chr4	134106541	-	UBAP1	chr9	34179972	-
3UTR-intron	ENST00000508179	ENST00000263253		ChiTaRS3.1			BE704331	SNHG18	chr5	9550160	+	EP300	chr22	41544797	-
intron-3CDS	ENST00000312196	ENST00000295897		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000312196	ENST00000415165		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000312196	ENST00000503124		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000312196	ENST00000509063		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000312196	ENST00000401494		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3UTR	ENST00000312196	ENST00000505649		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000337339	ENST00000295897		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000337339	ENST00000415165		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000337339	ENST00000503124		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000337339	ENST00000509063		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000337339	ENST00000401494		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3UTR	ENST00000337339	ENST00000505649		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000361672	ENST00000295897		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000361672	ENST00000415165		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000361672	ENST00000503124		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000361672	ENST00000509063		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000361672	ENST00000401494		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3UTR	ENST00000361672	ENST00000505649		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000398527	ENST00000295897		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000398527	ENST00000415165		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000398527	ENST00000503124		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000398527	ENST00000509063		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000398527	ENST00000401494		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3UTR	ENST00000398527	ENST00000505649		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
5UTR-3CDS	ENST00000380693	ENST00000295897		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
5UTR-3CDS	ENST00000380693	ENST00000415165		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
5UTR-3CDS	ENST00000380693	ENST00000503124		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
5UTR-3CDS	ENST00000380693	ENST00000509063		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
5UTR-3CDS	ENST00000380693	ENST00000401494		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
5UTR-3UTR	ENST00000380693	ENST00000505649		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000467141	ENST00000295897		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000467141	ENST00000415165		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000467141	ENST00000503124		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000467141	ENST00000509063		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3CDS	ENST00000467141	ENST00000401494		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
intron-3UTR	ENST00000467141	ENST00000505649		ChiTaRS3.1			AI114561	MSL3	chrX	11777779	-	ALB	chr4	74283960	+
3UTR-3UTR	ENST00000230340	ENST00000230340		ChiTaRS3.1			AI751001	BYSL	chr6	41900764	+	BYSL	chr6	41900646	-
intron-intron	ENST00000523111	ENST00000523111		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000523111	ENST00000521346		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000523111	ENST00000517630		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000523111	ENST00000520809		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000521346	ENST00000523111		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000521346	ENST00000521346		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000521346	ENST00000517630		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000521346	ENST00000520809		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000517630	ENST00000523111		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000517630	ENST00000521346		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000517630	ENST00000517630		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000517630	ENST00000520809		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000520809	ENST00000523111		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000520809	ENST00000521346		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000520809	ENST00000517630		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000520809	ENST00000520809		ChiTaRS3.1			CV359411	UBE2V2	chr8	48926126	-	UBE2V2	chr8	48926828	-
intron-intron	ENST00000265081	ENST00000265081		ChiTaRS3.1			AA846951	MSH3	chr5	80172560	+	MSH3	chr5	80172620	-
intron-intron	ENST00000265081	ENST00000512258		ChiTaRS3.1			AA846951	MSH3	chr5	80172560	+	MSH3	chr5	80172620	-
intron-intron	ENST00000512258	ENST00000265081		ChiTaRS3.1			AA846951	MSH3	chr5	80172560	+	MSH3	chr5	80172620	-
intron-intron	ENST00000512258	ENST00000512258		ChiTaRS3.1			AA846951	MSH3	chr5	80172560	+	MSH3	chr5	80172620	-
intron-intron	ENST00000607272	ENST00000607272		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
intron-intron	ENST00000607272	ENST00000234420		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
intron-intron	ENST00000607272	ENST00000540021		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
intron-intron	ENST00000607272	ENST00000538136		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000234420	ENST00000607272		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000234420	ENST00000234420		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000234420	ENST00000540021		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000234420	ENST00000538136		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000540021	ENST00000607272		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000540021	ENST00000234420		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000540021	ENST00000540021		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000540021	ENST00000538136		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000538136	ENST00000607272		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000538136	ENST00000234420		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000538136	ENST00000540021		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
5CDS-intron	ENST00000538136	ENST00000538136		ChiTaRS3.1			AW875091	MSH6	chr2	48027303	-	MSH6	chr2	48027238	+
intron-5UTR	ENST00000317977	ENST00000404648		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000405164		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000336098		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000407946		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000404648		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000405164		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000336098		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000407946		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000404648		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000405164		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000336098		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000407946		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000404648		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000405164		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000336098		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000407946		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000404648		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000405164		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000336098		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000407946		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000404648		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000405164		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000336098		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000407946		ChiTaRS3.1			AV657691	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-3CDS	ENST00000595618	ENST00000325642		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000595618	ENST00000529574		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000595618	ENST00000395076		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000595618	ENST00000325658		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000594824	ENST00000325642		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000594824	ENST00000529574		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000594824	ENST00000395076		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000594824	ENST00000325658		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000397274	ENST00000325642		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000397274	ENST00000529574		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000397274	ENST00000395076		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000397274	ENST00000325658		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000593411	ENST00000325642		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000593411	ENST00000529574		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000593411	ENST00000395076		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3CDS	ENST00000593411	ENST00000325658		ChiTaRS3.1			BF904341	MYO9B	chr19	17208315	-	PPM1A	chr14	60749751	-
intron-3UTR	ENST00000251081	ENST00000251081		ChiTaRS3.1			AA480631	DSC2	chr18	28647919	-	DSC2	chr18	28648036	+
intron-3UTR	ENST00000251081	ENST00000280904		ChiTaRS3.1			AA480631	DSC2	chr18	28647919	-	DSC2	chr18	28648036	+
intron-3UTR	ENST00000280904	ENST00000251081		ChiTaRS3.1			AA480631	DSC2	chr18	28647919	-	DSC2	chr18	28648036	+
intron-3UTR	ENST00000280904	ENST00000280904		ChiTaRS3.1			AA480631	DSC2	chr18	28647919	-	DSC2	chr18	28648036	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911261	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911261	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911261	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911261	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000382368	ENST00000539054		ChiTaRS3.1			BU631871	FBXL18	chr7	5538166	-	TXNDC5	chr6	8014841	+
intron-intron	ENST00000382368	ENST00000379757		ChiTaRS3.1			BU631871	FBXL18	chr7	5538166	-	TXNDC5	chr6	8014841	+
intron-intron	ENST00000382368	ENST00000473453		ChiTaRS3.1			BU631871	FBXL18	chr7	5538166	-	TXNDC5	chr6	8014841	+
intron-intron	ENST00000453700	ENST00000539054		ChiTaRS3.1			BU631871	FBXL18	chr7	5538166	-	TXNDC5	chr6	8014841	+
intron-intron	ENST00000453700	ENST00000379757		ChiTaRS3.1			BU631871	FBXL18	chr7	5538166	-	TXNDC5	chr6	8014841	+
intron-intron	ENST00000453700	ENST00000473453		ChiTaRS3.1			BU631871	FBXL18	chr7	5538166	-	TXNDC5	chr6	8014841	+
3UTR-intron	ENST00000400259	ENST00000222388		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
3UTR-3UTR	ENST00000400259	ENST00000287844		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
3UTR-intron	ENST00000400259	ENST00000473874		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
3UTR-intron	ENST00000344548	ENST00000222388		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
3UTR-3UTR	ENST00000344548	ENST00000287844		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
3UTR-intron	ENST00000344548	ENST00000473874		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-intron	ENST00000315554	ENST00000222388		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-3UTR	ENST00000315554	ENST00000287844		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-intron	ENST00000315554	ENST00000473874		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-intron	ENST00000498236	ENST00000222388		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-3UTR	ENST00000498236	ENST00000287844		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-intron	ENST00000498236	ENST00000473874		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-intron	ENST00000421089	ENST00000222388		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-3UTR	ENST00000421089	ENST00000287844		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-intron	ENST00000421089	ENST00000473874		ChiTaRS3.1			CX781471	CDC42	chr1	22418471	+	ABCF2	chr7	150911025	-
intron-3UTR	ENST00000392708	ENST00000282561		ChiTaRS3.1			BE696961	STT3A	chr11	125463073	+	GJA1	chr6	121769334	+
intron-3UTR	ENST00000529196	ENST00000282561		ChiTaRS3.1			BE696961	STT3A	chr11	125463073	+	GJA1	chr6	121769334	+
intron-3UTR	ENST00000531491	ENST00000282561		ChiTaRS3.1			BE696961	STT3A	chr11	125463073	+	GJA1	chr6	121769334	+
intron-3UTR	ENST00000526364	ENST00000282561		ChiTaRS3.1			BE696961	STT3A	chr11	125463073	+	GJA1	chr6	121769334	+
Frame-shit	ENST00000053867	ENST00000373463		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
5CDS-intron	ENST00000053867	ENST00000329151		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
5CDS-5UTR	ENST00000053867	ENST00000475208		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-3CDS	ENST00000589265	ENST00000373463		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-intron	ENST00000589265	ENST00000329151		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-5UTR	ENST00000589265	ENST00000475208		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
3UTR-3CDS	ENST00000589923	ENST00000373463		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
3UTR-intron	ENST00000589923	ENST00000329151		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
3UTR-5UTR	ENST00000589923	ENST00000475208		ChiTaRS3.1			AW062631	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-intron	ENST00000418596	ENST00000331825		ChiTaRS3.1			AW297471	FAM126B	chr2	201912611	-	FTL	chr19	49470136	-
intron-intron	ENST00000485144	ENST00000331825		ChiTaRS3.1			AW297471	FAM126B	chr2	201912611	-	FTL	chr19	49470136	-
intron-intron	ENST00000277198	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000277198	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000277198	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000277198	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000277198	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000277198	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000277198	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000297979	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000375315	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000395357	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000425634	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000433691	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000277198		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000297979		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000375315		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000395357		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000425634		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000433691		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
intron-intron	ENST00000473778	ENST00000473778		ChiTaRS3.1			BF753881	C9orf3	chr9	97795078	-	C9orf3	chr9	97794998	+
5CDS-3UTR	ENST00000333213	ENST00000333213		ChiTaRS3.1			BX483091	TSEN54	chr17	73518394	-	TSEN54	chr17	73520695	-
5CDS-intron	ENST00000333213	ENST00000580013		ChiTaRS3.1			BX483091	TSEN54	chr17	73518394	-	TSEN54	chr17	73520695	-
intron-3UTR	ENST00000580013	ENST00000333213		ChiTaRS3.1			BX483091	TSEN54	chr17	73518394	-	TSEN54	chr17	73520695	-
intron-intron	ENST00000580013	ENST00000580013		ChiTaRS3.1			BX483091	TSEN54	chr17	73518394	-	TSEN54	chr17	73520695	-
3UTR-3UTR	ENST00000218548	ENST00000218548		ChiTaRS3.1			BU675871	ATP12A	chr13	25285769	-	ATP12A	chr13	25285705	+
3UTR-3UTR	ENST00000218548	ENST00000381946		ChiTaRS3.1			BU675871	ATP12A	chr13	25285769	-	ATP12A	chr13	25285705	+
3UTR-3UTR	ENST00000381946	ENST00000218548		ChiTaRS3.1			BU675871	ATP12A	chr13	25285769	-	ATP12A	chr13	25285705	+
3UTR-3UTR	ENST00000381946	ENST00000381946		ChiTaRS3.1			BU675871	ATP12A	chr13	25285769	-	ATP12A	chr13	25285705	+
5CDS-3UTR	ENST00000316059	ENST00000316059		ChiTaRS3.1			BQ448441	ZFP91	chr11	58385091	-	ZFP91	chr11	58388092	-
Frame-shit	ENST00000372009	ENST00000255641		ChiTaRS3.1			BI040601	MAST2	chr1	46491369	-	CSNK1G2	chr19	1979513	-
5CDS-intron	ENST00000372009	ENST00000587123		ChiTaRS3.1			BI040601	MAST2	chr1	46491369	-	CSNK1G2	chr19	1979513	-
Frame-shit	ENST00000361297	ENST00000255641		ChiTaRS3.1			BI040601	MAST2	chr1	46491369	-	CSNK1G2	chr19	1979513	-
5CDS-intron	ENST00000361297	ENST00000587123		ChiTaRS3.1			BI040601	MAST2	chr1	46491369	-	CSNK1G2	chr19	1979513	-
intron-3CDS	ENST00000477968	ENST00000255641		ChiTaRS3.1			BI040601	MAST2	chr1	46491369	-	CSNK1G2	chr19	1979513	-
intron-intron	ENST00000477968	ENST00000587123		ChiTaRS3.1			BI040601	MAST2	chr1	46491369	-	CSNK1G2	chr19	1979513	-
intron-intron	ENST00000315087	ENST00000315087		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000315087	ENST00000590497		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000315087	ENST00000538168		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000315087	ENST00000536490		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000590497	ENST00000315087		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000590497	ENST00000590497		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000590497	ENST00000538168		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000590497	ENST00000536490		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000538168	ENST00000315087		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000538168	ENST00000590497		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000538168	ENST00000538168		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000538168	ENST00000536490		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000536490	ENST00000315087		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000536490	ENST00000590497		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000536490	ENST00000538168		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-intron	ENST00000536490	ENST00000536490		ChiTaRS3.1			W28821	ST8SIA5	chr18	44300590	+	ST8SIA5	chr18	44300477	-
intron-3CDS	ENST00000436443	ENST00000339438		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000436443	ENST00000438362		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000436443	ENST00000358528		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000436443	ENST00000261443		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000436443	ENST00000530886		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000436443	ENST00000369530		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000436443	ENST00000483407		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000436443	ENST00000534699		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000342788	ENST00000339438		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000342788	ENST00000438362		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000342788	ENST00000358528		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000342788	ENST00000261443		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000342788	ENST00000530886		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000342788	ENST00000369530		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000342788	ENST00000483407		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000342788	ENST00000534699		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402597	ENST00000339438		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402597	ENST00000438362		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402597	ENST00000358528		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402597	ENST00000261443		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402597	ENST00000530886		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402597	ENST00000369530		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000402597	ENST00000483407		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000402597	ENST00000534699		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000484474	ENST00000339438		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000484474	ENST00000438362		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000484474	ENST00000358528		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000484474	ENST00000261443		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000484474	ENST00000530886		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000484474	ENST00000369530		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000484474	ENST00000483407		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-intron	ENST00000484474	ENST00000534699		ChiTaRS3.1			CA440341	ERBB4	chr2	213144187	-	CSDE1	chr1	115275319	-
intron-3CDS	ENST00000402038	ENST00000359156		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000402038	ENST00000541972		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000402038	ENST00000396620		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000402038	ENST00000432237		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-intron	ENST00000402038	ENST00000539632		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000492350	ENST00000359156		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000492350	ENST00000541972		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000492350	ENST00000396620		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3CDS	ENST00000492350	ENST00000432237		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-intron	ENST00000492350	ENST00000539632		ChiTaRS3.1			AI963901	PARG	chr10	51590511	-	CD163	chr12	7647923	+
intron-3UTR	ENST00000368026	ENST00000368026		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000368026	ENST00000289779		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000368026	ENST00000537746		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000368026	ENST00000472573		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000289779	ENST00000368026		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000289779	ENST00000289779		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000289779	ENST00000537746		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000289779	ENST00000472573		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000537746	ENST00000368026		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000537746	ENST00000289779		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000537746	ENST00000537746		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000537746	ENST00000472573		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000472573	ENST00000368026		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000472573	ENST00000289779		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000472573	ENST00000537746		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000472573	ENST00000472573		ChiTaRS3.1			AA662651	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000377799	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377799	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377766	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000412821	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000358282	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000351358	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000457442	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000452380	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000322191		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000342512		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000371774		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000307534		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000488990	ENST00000488482		ChiTaRS3.1			BF827381	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3CDS	ENST00000406936	ENST00000406936		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000406936	ENST00000377615		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000406936	ENST00000377619		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000406936	ENST00000355801		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-5UTR	ENST00000406936	ENST00000460675		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377615	ENST00000406936		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377615	ENST00000377615		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377615	ENST00000377619		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377615	ENST00000355801		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-5UTR	ENST00000377615	ENST00000460675		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377619	ENST00000406936		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377619	ENST00000377615		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377619	ENST00000377619		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000377619	ENST00000355801		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-5UTR	ENST00000377619	ENST00000460675		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000355801	ENST00000406936		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000355801	ENST00000377615		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000355801	ENST00000377619		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000355801	ENST00000355801		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-5UTR	ENST00000355801	ENST00000460675		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000460675	ENST00000406936		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000460675	ENST00000377615		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000460675	ENST00000377619		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-3CDS	ENST00000460675	ENST00000355801		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-5UTR	ENST00000460675	ENST00000460675		ChiTaRS3.1			CB242821	COMMD6	chr13	76100716	+	COMMD6	chr13	76104289	-
intron-intron	ENST00000413272	ENST00000413272		ChiTaRS3.1			BX111221	NUGGC	chr8	27918402	-	NUGGC	chr8	27931886	-
intron-intron	ENST00000413272	ENST00000341513		ChiTaRS3.1			BX111221	NUGGC	chr8	27918402	-	NUGGC	chr8	27931886	-
intron-intron	ENST00000341513	ENST00000413272		ChiTaRS3.1			BX111221	NUGGC	chr8	27918402	-	NUGGC	chr8	27931886	-
intron-intron	ENST00000341513	ENST00000341513		ChiTaRS3.1			BX111221	NUGGC	chr8	27918402	-	NUGGC	chr8	27931886	-
intron-intron	ENST00000372390	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372390	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372397	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372397	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000315660	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000315660	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372383	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372383	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372384	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372384	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372382	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000372382	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000506081	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000506081	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000514426	ENST00000371142		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000514426	ENST00000490192		ChiTaRS3.1			AW118541	TSC22D3	chrX	106956638	+	TM9SF3	chr10	98313378	+
intron-intron	ENST00000575270	ENST00000575270		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-3UTR	ENST00000575270	ENST00000349223		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-3UTR	ENST00000575270	ENST00000329524		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-3UTR	ENST00000575270	ENST00000346183		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-intron	ENST00000575270	ENST00000535127		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000349223	ENST00000575270		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000349223	ENST00000349223		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000349223	ENST00000329524		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000349223	ENST00000346183		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000349223	ENST00000535127		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000329524	ENST00000575270		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000329524	ENST00000349223		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000329524	ENST00000329524		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000329524	ENST00000346183		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000329524	ENST00000535127		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000346183	ENST00000575270		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000346183	ENST00000349223		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000346183	ENST00000329524		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000346183	ENST00000346183		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000346183	ENST00000535127		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000535127	ENST00000575270		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000535127	ENST00000349223		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000535127	ENST00000329524		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000535127	ENST00000346183		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000535127	ENST00000535127		ChiTaRS3.1			AA531091	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-intron	ENST00000398519	ENST00000398519		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000398519	ENST00000314028		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000398519	ENST00000392334		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000398519	ENST00000578904		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000314028	ENST00000398519		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000314028	ENST00000314028		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000314028	ENST00000392334		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000314028	ENST00000578904		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000392334	ENST00000398519		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000392334	ENST00000314028		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000392334	ENST00000392334		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000392334	ENST00000578904		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000578904	ENST00000398519		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000578904	ENST00000314028		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000578904	ENST00000392334		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-intron	ENST00000578904	ENST00000578904		ChiTaRS3.1			BG563951	CSNK1D	chr17	80226228	-	CSNK1D	chr17	80227309	-
intron-3UTR	ENST00000381196	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000381196	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000360074	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000360074	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000537002	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000537002	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000397617	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000397617	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000358503	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000358503	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000397611	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000397611	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000355233	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000355233	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000356435	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000356435	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000540109	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000540109	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000486161	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000486161	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000397606	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000397606	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000463477	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000463477	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000471274	ENST00000370775		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-intron	ENST00000471274	ENST00000520964		ChiTaRS3.1			AA447501	PTPRD	chr9	8485537	-	FAM127B	chrX	134185626	-
intron-3UTR	ENST00000338564	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000338564	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000338564	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000338564	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000561208	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000561208	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000561208	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397624	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000397624	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000397624	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000382766	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000382766	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000382766	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000444725	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000444725	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000444725	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000340545	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000340545	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000340545	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559085	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000559085	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000559085	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000219869	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000219869	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000219869	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000557796	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000557796	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000557796	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000397620	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000397620	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000397620	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000424352	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000424352	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000424352	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559561	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000559561	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000559561	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000338564		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000561208		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000397624		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000382766		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000444725		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000340545		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000559085		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000219869		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000557796		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000397620		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3UTR	ENST00000559408	ENST00000424352		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000559408	ENST00000559561		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-intron	ENST00000559408	ENST00000559408		ChiTaRS3.1			AI804571	MEIS2	chr15	37183320	+	MEIS2	chr15	37184333	-
intron-3CDS	ENST00000496484	ENST00000262544		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000336714		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377475		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377465		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000496484	ENST00000494645		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000262544		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000336714		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377475		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377465		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000253686	ENST00000494645		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000262544		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000336714		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377475		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377465		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000449354	ENST00000494645		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000262544		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000336714		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377475		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377465		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000444840	ENST00000494645		ChiTaRS3.1			AI399751	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000376279	ENST00000376279		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376279	ENST00000376286		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376279	ENST00000376285		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376279	ENST00000485946		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000376279		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000376286		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000376285		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000485946		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000376279		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000376286		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000376285		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000485946		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000376279		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000376286		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000376285		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000485946		ChiTaRS3.1			BE071691	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
3UTR-3UTR	ENST00000432069	ENST00000432069		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000432069	ENST00000564053		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-intron	ENST00000432069	ENST00000568199		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000432069	ENST00000268605		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000432069	ENST00000568146		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000564053	ENST00000432069		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000564053	ENST00000564053		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-intron	ENST00000564053	ENST00000568199		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000564053	ENST00000268605		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000564053	ENST00000568146		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
intron-3UTR	ENST00000568199	ENST00000432069		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
intron-3UTR	ENST00000568199	ENST00000564053		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
intron-intron	ENST00000568199	ENST00000568199		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
intron-3UTR	ENST00000568199	ENST00000268605		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
intron-3UTR	ENST00000568199	ENST00000568146		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000268605	ENST00000432069		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000268605	ENST00000564053		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-intron	ENST00000268605	ENST00000568199		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000268605	ENST00000268605		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000268605	ENST00000568146		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000568146	ENST00000432069		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000568146	ENST00000564053		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-intron	ENST00000568146	ENST00000568199		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000568146	ENST00000268605		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
3UTR-3UTR	ENST00000568146	ENST00000568146		ChiTaRS3.1			CB052171	NOL3	chr16	67209298	-	NOL3	chr16	67209338	+
intron-intron	ENST00000340855	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000537071	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000541269	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000422081	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000370441	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000490775	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000370443	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000427113	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-intron	ENST00000428056	ENST00000364938		ChiTaRS3.1			BU622671	IDS	chrX	148560630	+	SNHG3	chr1	28835825	-
intron-3CDS	ENST00000416872	ENST00000262554		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-5UTR	ENST00000416872	ENST00000482632		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-intron	ENST00000416872	ENST00000337841		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-3CDS	ENST00000449956	ENST00000262554		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-5UTR	ENST00000449956	ENST00000482632		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-intron	ENST00000449956	ENST00000337841		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-3CDS	ENST00000465243	ENST00000262554		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-5UTR	ENST00000465243	ENST00000482632		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-intron	ENST00000465243	ENST00000337841		ChiTaRS3.1			AI065091	ITIH3	chr3	52839336	+	SPTLC1	chr9	94830379	-
intron-intron	ENST00000258439	ENST00000497685		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-3UTR	ENST00000258439	ENST00000264234		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-3UTR	ENST00000258439	ENST00000460625		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-intron	ENST00000432959	ENST00000497685		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-3UTR	ENST00000432959	ENST00000264234		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-3UTR	ENST00000432959	ENST00000460625		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-intron	ENST00000435268	ENST00000497685		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-3UTR	ENST00000435268	ENST00000264234		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
intron-3UTR	ENST00000435268	ENST00000460625		ChiTaRS3.1			CB241811	TMEM127	chr2	96917229	-	UPK1B	chr3	118923667	+
Frame-shit	ENST00000053867	ENST00000053867		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
Frame-shit	ENST00000053867	ENST00000589265		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
5CDS-intron	ENST00000053867	ENST00000589923		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
Frame-shit	ENST00000589265	ENST00000053867		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
Frame-shit	ENST00000589265	ENST00000589265		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
5CDS-intron	ENST00000589265	ENST00000589923		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-3CDS	ENST00000589923	ENST00000053867		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-3CDS	ENST00000589923	ENST00000589265		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-intron	ENST00000589923	ENST00000589923		ChiTaRS3.1			AU252601	GRN	chr17	42429016	+	GRN	chr17	42426550	+
3UTR-3UTR	ENST00000360472	ENST00000360472		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-intron	ENST00000360472	ENST00000368077		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-3UTR	ENST00000360472	ENST00000368076		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-intron	ENST00000360472	ENST00000488858		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-3UTR	ENST00000368077	ENST00000360472		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-intron	ENST00000368077	ENST00000368077		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-3UTR	ENST00000368077	ENST00000368076		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-intron	ENST00000368077	ENST00000488858		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-3UTR	ENST00000368076	ENST00000360472		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-intron	ENST00000368076	ENST00000368077		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-3UTR	ENST00000368076	ENST00000368076		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
3UTR-intron	ENST00000368076	ENST00000488858		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
intron-3UTR	ENST00000488858	ENST00000360472		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
intron-intron	ENST00000488858	ENST00000368077		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
intron-3UTR	ENST00000488858	ENST00000368076		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
intron-intron	ENST00000488858	ENST00000488858		ChiTaRS3.1			BF987701	PEA15	chr1	160183599	-	PEA15	chr1	160184219	-
intron-intron	ENST00000373247	ENST00000373247		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373247	ENST00000373245		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373247	ENST00000393706		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373247	ENST00000460181		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-5UTR	ENST00000373247	ENST00000373225		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373245	ENST00000373247		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373245	ENST00000373245		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373245	ENST00000393706		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373245	ENST00000460181		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-5UTR	ENST00000373245	ENST00000373225		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000393706	ENST00000373247		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000393706	ENST00000373245		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000393706	ENST00000393706		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000393706	ENST00000460181		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-5UTR	ENST00000393706	ENST00000373225		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000460181	ENST00000373247		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000460181	ENST00000373245		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000460181	ENST00000393706		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000460181	ENST00000460181		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-5UTR	ENST00000460181	ENST00000373225		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373225	ENST00000373247		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373225	ENST00000373245		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373225	ENST00000393706		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-intron	ENST00000373225	ENST00000460181		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-5UTR	ENST00000373225	ENST00000373225		ChiTaRS3.1			CN275141	FPGS	chr9	130565993	+	FPGS	chr9	130565673	+
intron-3UTR	ENST00000396593	ENST00000396593		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000396593	ENST00000311052		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000396593	ENST00000561530		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000396593	ENST00000567554		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000396593	ENST00000562843		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000396593	ENST00000567626		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-3UTR	ENST00000311052	ENST00000396593		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000311052	ENST00000311052		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000311052	ENST00000561530		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000311052	ENST00000567554		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000311052	ENST00000562843		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000311052	ENST00000567626		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-3UTR	ENST00000561530	ENST00000396593		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000561530	ENST00000311052		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000561530	ENST00000561530		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000561530	ENST00000567554		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000561530	ENST00000562843		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000561530	ENST00000567626		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-3UTR	ENST00000567554	ENST00000396593		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567554	ENST00000311052		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567554	ENST00000561530		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567554	ENST00000567554		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567554	ENST00000562843		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567554	ENST00000567626		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-3UTR	ENST00000562843	ENST00000396593		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000562843	ENST00000311052		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000562843	ENST00000561530		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000562843	ENST00000567554		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000562843	ENST00000562843		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000562843	ENST00000567626		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-3UTR	ENST00000567626	ENST00000396593		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567626	ENST00000311052		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567626	ENST00000561530		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567626	ENST00000567554		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567626	ENST00000562843		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000567626	ENST00000567626		ChiTaRS3.1			AW003871	CARHSP1	chr16	8947212	+	CARHSP1	chr16	8947396	-
intron-intron	ENST00000553221	ENST00000264276		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000553221	ENST00000467448		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000553221	ENST00000496244		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000553221	ENST00000457679		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000257910	ENST00000264276		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000257910	ENST00000467448		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000257910	ENST00000496244		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000257910	ENST00000457679		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000547992	ENST00000264276		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000547992	ENST00000467448		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000547992	ENST00000496244		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
3UTR-intron	ENST00000547992	ENST00000457679		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000547472	ENST00000264276		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000547472	ENST00000467448		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000547472	ENST00000496244		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000547472	ENST00000457679		ChiTaRS3.1			AA768861	TSPAN31	chr12	58141794	-	ALS2	chr2	202622027	+
intron-intron	ENST00000263168	ENST00000482399		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000445902		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000478934		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000436044		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000448042		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000488583		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000441058		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000471761		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000443860		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000483351		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000383210		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000489236		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000485418		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000421357		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000428608		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000263168	ENST00000484649		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000482399		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000445902		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000478934		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000436044		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000448042		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000488583		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000441058		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000471761		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000443860		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000483351		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000383210		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000489236		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000485418		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000421357		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000428608		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000476936	ENST00000484649		ChiTaRS3.1			BG987401	CAPZA1	chr1	113201380	+	VPS52	chr6	4712719	-
intron-intron	ENST00000391918	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000391918	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000391918	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000391918	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000391918	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000391918	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000391918	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000391918	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-intron	ENST00000291295	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-5UTR	ENST00000291295	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-5UTR	ENST00000291295	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-3UTR	ENST00000291295	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-3UTR	ENST00000291295	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-intron	ENST00000291295	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-intron	ENST00000291295	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
3UTR-intron	ENST00000291295	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000597743	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000597743	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000597743	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000597743	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000597743	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000597743	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000597743	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000597743	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000477244	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000477244	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000477244	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000477244	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000477244	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000477244	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000477244	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000477244	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000598871	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000598871	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000598871	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000598871	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000598871	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000598871	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000598871	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000598871	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000594523	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000594523	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000594523	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000594523	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000594523	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000594523	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000594523	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000594523	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000599839	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000599839	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000599839	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000599839	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000599839	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000599839	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000599839	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000599839	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000596362	ENST00000391918		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000596362	ENST00000291295		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-5UTR	ENST00000596362	ENST00000597743		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000596362	ENST00000477244		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-3UTR	ENST00000596362	ENST00000598871		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000596362	ENST00000594523		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000596362	ENST00000599839		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000596362	ENST00000596362		ChiTaRS3.1			M86171	CALM3	chr19	47113557	-	CALM3	chr19	47104584	+
intron-intron	ENST00000378609	ENST00000378609		ChiTaRS3.1			W26101	GNB1	chr1	1717927	+	GNB1	chr1	1763711	-
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			W26101	GNB1	chr1	1717927	+	GNB1	chr1	1763711	-
intron-intron	ENST00000472614	ENST00000378609		ChiTaRS3.1			W26101	GNB1	chr1	1717927	+	GNB1	chr1	1763711	-
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			W26101	GNB1	chr1	1717927	+	GNB1	chr1	1763711	-
intron-intron	ENST00000375915	ENST00000375915		ChiTaRS3.1			AA558131	FAM155A	chr13	108505139	-	FAM155A	chr13	108504514	+
intron-intron	ENST00000392693	ENST00000554922		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000392693	ENST00000352093		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000392693	ENST00000380664		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000392693	ENST00000553320		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000531738	ENST00000554922		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000531738	ENST00000352093		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000531738	ENST00000380664		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000531738	ENST00000553320		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000263577	ENST00000554922		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000263577	ENST00000352093		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000263577	ENST00000380664		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-intron	ENST00000263577	ENST00000553320		ChiTaRS3.1			AI568591	CDON	chr11	125833206	+	EML5	chr14	89214972	-
intron-3CDS	ENST00000275034	ENST00000275034		ChiTaRS3.1			CN298941	PHIP	chr6	79692831	+	PHIP	chr6	79700704	-
intron-intron	ENST00000275034	ENST00000479165		ChiTaRS3.1			CN298941	PHIP	chr6	79692831	+	PHIP	chr6	79700704	-
intron-3CDS	ENST00000479165	ENST00000275034		ChiTaRS3.1			CN298941	PHIP	chr6	79692831	+	PHIP	chr6	79700704	-
intron-intron	ENST00000479165	ENST00000479165		ChiTaRS3.1			CN298941	PHIP	chr6	79692831	+	PHIP	chr6	79700704	-
intron-3CDS	ENST00000371711	ENST00000546500		ChiTaRS3.1			AW376281	B4GALT5	chr20	48252939	+	HNRNPA1	chr12	54676361	+
intron-3CDS	ENST00000371711	ENST00000340913		ChiTaRS3.1			AW376281	B4GALT5	chr20	48252939	+	HNRNPA1	chr12	54676361	+
intron-3CDS	ENST00000371711	ENST00000330752		ChiTaRS3.1			AW376281	B4GALT5	chr20	48252939	+	HNRNPA1	chr12	54676361	+
intron-3CDS	ENST00000371711	ENST00000547276		ChiTaRS3.1			AW376281	B4GALT5	chr20	48252939	+	HNRNPA1	chr12	54676361	+
intron-intron	ENST00000371711	ENST00000551803		ChiTaRS3.1			AW376281	B4GALT5	chr20	48252939	+	HNRNPA1	chr12	54676361	+
intron-intron	ENST00000421182	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000421182	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357867	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000323926	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000336916	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000354785	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000357009	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000346544	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000345488	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000359671	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000446046	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000443816	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000432072	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000356005	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000490833	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000421182		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000357867		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000323926		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000336916		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000354785		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000357009		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000346544		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000345488		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000359671		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000446046		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000443816		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000432072		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000356005		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000490833		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000426059	ENST00000426059		ChiTaRS3.1			CN391591	FN1	chr2	216236849	-	FN1	chr2	216237038	-
intron-intron	ENST00000540235	ENST00000338316		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000540235	ENST00000537121		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000540235	ENST00000513693		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000393930	ENST00000338316		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000393930	ENST00000537121		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000393930	ENST00000513693		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000393931	ENST00000338316		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000393931	ENST00000537121		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000393931	ENST00000513693		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000310706	ENST00000338316		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000310706	ENST00000537121		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-intron	ENST00000310706	ENST00000513693		ChiTaRS3.1			AA159721	JUP	chr17	39847603	-	ADCY2	chr1	152006235	-
intron-3UTR	ENST00000261844	ENST00000261844		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-intron	ENST00000261844	ENST00000562351		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-3UTR	ENST00000261844	ENST00000546305		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-3UTR	ENST00000562351	ENST00000261844		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-intron	ENST00000562351	ENST00000562351		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-3UTR	ENST00000562351	ENST00000546305		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-3UTR	ENST00000546305	ENST00000261844		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-intron	ENST00000546305	ENST00000562351		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-3UTR	ENST00000546305	ENST00000546305		ChiTaRS3.1			W32211	FAM214A	chr15	52874170	+	FAM214A	chr15	52874130	-
intron-3UTR	ENST00000216181	ENST00000216181		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000216181	ENST00000475726		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000216181	ENST00000401701		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-3UTR	ENST00000475726	ENST00000216181		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000475726	ENST00000475726		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000475726	ENST00000401701		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-3UTR	ENST00000401701	ENST00000216181		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000401701	ENST00000475726		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000401701	ENST00000401701		ChiTaRS3.1			CK000241	MYH9	chr22	36677448	+	MYH9	chr22	36677814	-
intron-intron	ENST00000505731	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000505731	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000505731	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000505731	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000505731	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000505731	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507999	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507999	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507999	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507999	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507999	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507999	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512712	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512712	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512712	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512712	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512712	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512712	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000515194	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000515194	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000515194	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000515194	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000515194	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000515194	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000503709	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000503709	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000503709	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000503709	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000503709	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000503709	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507702	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507702	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507702	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507702	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507702	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000507702	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512802	ENST00000297423		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512802	ENST00000518074		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512802	ENST00000541342		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512802	ENST00000521214		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512802	ENST00000517693		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000512802	ENST00000518060		ChiTaRS3.1			BF356551	NOP14-AS1	chr4	2952974	+	SPIDR	chr8	48279215	-
intron-intron	ENST00000377795	ENST00000370818		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000377795	ENST00000394299		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000377795	ENST00000543339		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000353334	ENST00000370818		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000353334	ENST00000394299		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000353334	ENST00000543339		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
5CDS-intron	ENST00000524315	ENST00000370818		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
5CDS-intron	ENST00000524315	ENST00000394299		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
5CDS-intron	ENST00000524315	ENST00000543339		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000009530	ENST00000370818		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000009530	ENST00000394299		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000009530	ENST00000543339		ChiTaRS3.1			BG153241	CD74	chr5	149781425	-	GPC3	chrX	132846220	-
intron-intron	ENST00000301149	ENST00000301149		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000301149	ENST00000547190		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000301149	ENST00000548814		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000547190	ENST00000301149		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000547190	ENST00000547190		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000547190	ENST00000548814		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000548814	ENST00000301149		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000548814	ENST00000547190		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-intron	ENST00000548814	ENST00000548814		ChiTaRS3.1			U22961	GPD1	chr12	50501765	+	GPD1	chr12	50502485	-
intron-3UTR	ENST00000380680	ENST00000295417		ChiTaRS3.1			BM670781	UBL3	chr13	30341335	+	FZD5	chr2	208629266	-
intron-intron	ENST00000302640	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000302640	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000354582	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000423119	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000456211	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000357086	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000544951	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000443694	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000302640		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000354582		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000423119		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000456211		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000357086		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000544951		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000443694		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000463980	ENST00000463980		ChiTaRS3.1			N42861	ITPR1	chr3	4874304	-	ITPR1	chr3	4875619	-
intron-intron	ENST00000264162	ENST00000343411		ChiTaRS3.1			AY191611	LCT	chr2	136551907	-	MBTPS1	chr16	84115913	+
intron-intron	ENST00000264162	ENST00000569770		ChiTaRS3.1			AY191611	LCT	chr2	136551907	-	MBTPS1	chr16	84115913	+
3UTR-3UTR	ENST00000265113	ENST00000585421		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000265113	ENST00000536189		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000265113	ENST00000262768		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000265113	ENST00000586057		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
intron-3UTR	ENST00000506725	ENST00000585421		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
intron-3UTR	ENST00000506725	ENST00000536189		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
intron-3UTR	ENST00000506725	ENST00000262768		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
intron-3UTR	ENST00000506725	ENST00000586057		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000381918	ENST00000585421		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000381918	ENST00000536189		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000381918	ENST00000262768		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
3UTR-3UTR	ENST00000381918	ENST00000586057		ChiTaRS3.1			AI086141	SLC1A3	chr5	36688138	-	TIMP2	chr17	76850786	+
5CDS-intron	ENST00000265016	ENST00000380516		ChiTaRS3.1			BE856481	BST1	chr4	15733447	-	SLTM	chr15	59192845	+
5CDS-intron	ENST00000265016	ENST00000536328		ChiTaRS3.1			BE856481	BST1	chr4	15733447	-	SLTM	chr15	59192845	+
5CDS-5UTR	ENST00000265016	ENST00000557950		ChiTaRS3.1			BE856481	BST1	chr4	15733447	-	SLTM	chr15	59192845	+
5CDS-intron	ENST00000382346	ENST00000380516		ChiTaRS3.1			BE856481	BST1	chr4	15733447	-	SLTM	chr15	59192845	+
5CDS-intron	ENST00000382346	ENST00000536328		ChiTaRS3.1			BE856481	BST1	chr4	15733447	-	SLTM	chr15	59192845	+
5CDS-5UTR	ENST00000382346	ENST00000557950		ChiTaRS3.1			BE856481	BST1	chr4	15733447	-	SLTM	chr15	59192845	+
intron-5UTR	ENST00000544260	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000544260	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381869	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381869	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381861	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381861	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000262102	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000262102	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000519263	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000519263	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000400046	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000400046	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000297488	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000297488	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000518713	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000518713	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381862	ENST00000257570		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381862	ENST00000339275		ChiTaRS3.1			AF063611	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-intron	ENST00000435880	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000435880	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000435880	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000435880	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457076	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457076	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457076	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457076	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413436	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413436	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413436	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413436	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418564	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418564	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418564	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418564	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415222	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415222	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415222	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415222	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594376	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594376	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594376	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594376	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000456161	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000456161	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000456161	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000456161	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419963	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419963	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419963	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419963	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599673	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599673	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599673	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599673	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418308	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418308	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418308	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000418308	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596028	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596028	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596028	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596028	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601431	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601431	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601431	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601431	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000452431	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000452431	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000452431	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000452431	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000423402	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000423402	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000423402	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000423402	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000411429	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000411429	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000411429	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000411429	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000420309	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000420309	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000420309	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000420309	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000434781	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000434781	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000434781	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000434781	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415742	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415742	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415742	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415742	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457770	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457770	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457770	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000457770	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419542	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419542	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419542	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000419542	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596259	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596259	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596259	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596259	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000598586	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000598586	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000598586	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000598586	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416395	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416395	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416395	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416395	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000366234	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000366234	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000366234	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000366234	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599427	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599427	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599427	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000599427	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000597318	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000597318	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000597318	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000597318	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425333	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425333	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425333	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425333	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425601	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425601	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425601	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000425601	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000429599	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000429599	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000429599	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000429599	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000449178	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000449178	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000449178	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000449178	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458686	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458686	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458686	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458686	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421843	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421843	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421843	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421843	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000432604	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000432604	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000432604	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000432604	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421255	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421255	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421255	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000421255	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000422515	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000422515	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000422515	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000422515	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413069	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413069	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413069	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413069	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444410	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444410	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444410	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444410	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458698	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458698	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458698	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000458698	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000603347	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000603347	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000603347	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000603347	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000604346	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000604346	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000604346	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000604346	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413791	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413791	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413791	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000413791	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416506	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416506	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416506	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416506	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439670	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439670	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439670	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439670	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000442040	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000442040	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000442040	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000442040	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609543	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609543	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609543	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609543	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601396	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601396	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601396	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601396	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601494	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601494	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601494	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601494	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000602091	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000602091	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000602091	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000602091	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596573	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596573	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596573	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596573	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594548	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594548	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594548	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000594548	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000600002	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000600002	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000600002	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000600002	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601395	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601395	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601395	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000601395	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000595459	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000595459	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000595459	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000595459	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437456	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437456	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437456	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437456	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416068	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416068	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416068	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000416068	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444320	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444320	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444320	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000444320	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415060	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415060	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415060	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000415060	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596665	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596665	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596665	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000596665	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439892	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439892	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439892	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000439892	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000608964	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000608964	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000608964	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000608964	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609075	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609075	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609075	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000609075	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437019	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437019	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437019	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000437019	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000610168	ENST00000373479		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000610168	ENST00000469731		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000610168	ENST00000394443		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
intron-intron	ENST00000610168	ENST00000479516		ChiTaRS3.1			BQ315591	PCBP1-AS1	chr2	70307898	+	RNF8	chr6	37332860	+
3UTR-intron	ENST00000358220	ENST00000358220		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000358220	ENST00000381329		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000358220	ENST00000263150		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000358220	ENST00000482165		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000381329	ENST00000358220		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000381329	ENST00000381329		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000381329	ENST00000263150		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000381329	ENST00000482165		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000263150	ENST00000358220		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000263150	ENST00000381329		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000263150	ENST00000263150		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
3UTR-intron	ENST00000263150	ENST00000482165		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000482165	ENST00000358220		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000482165	ENST00000381329		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000482165	ENST00000263150		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
intron-intron	ENST00000482165	ENST00000482165		ChiTaRS3.1			AA092371	WDR37	chr10	1177197	+	WDR37	chr10	1174955	+
5CDS-intron	ENST00000358731	ENST00000358731		ChiTaRS3.1			DA056281	BDP1	chr5	70808255	+	BDP1	chr5	70798399	+
5CDS-intron	ENST00000358731	ENST00000380675		ChiTaRS3.1			DA056281	BDP1	chr5	70808255	+	BDP1	chr5	70798399	+
5UTR-intron	ENST00000380675	ENST00000358731		ChiTaRS3.1			DA056281	BDP1	chr5	70808255	+	BDP1	chr5	70798399	+
5UTR-intron	ENST00000380675	ENST00000380675		ChiTaRS3.1			DA056281	BDP1	chr5	70808255	+	BDP1	chr5	70798399	+
intron-3CDS	ENST00000364938	ENST00000460436		ChiTaRS3.1			BG108121	SNHG3	chr1	28835429	+	AIFM1	chrX	129265777	-
intron-3CDS	ENST00000364938	ENST00000440263		ChiTaRS3.1			BG108121	SNHG3	chr1	28835429	+	AIFM1	chrX	129265777	-
intron-3UTR	ENST00000364938	ENST00000535724		ChiTaRS3.1			BG108121	SNHG3	chr1	28835429	+	AIFM1	chrX	129265777	-
intron-3UTR	ENST00000364938	ENST00000346424		ChiTaRS3.1			BG108121	SNHG3	chr1	28835429	+	AIFM1	chrX	129265777	-
intron-3UTR	ENST00000364938	ENST00000319908		ChiTaRS3.1			BG108121	SNHG3	chr1	28835429	+	AIFM1	chrX	129265777	-
intron-3UTR	ENST00000364938	ENST00000287295		ChiTaRS3.1			BG108121	SNHG3	chr1	28835429	+	AIFM1	chrX	129265777	-
intron-intron	ENST00000317096	ENST00000317096		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000317096	ENST00000311101		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000317096	ENST00000435888		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000311101	ENST00000317096		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000311101	ENST00000311101		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000311101	ENST00000435888		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000435888	ENST00000317096		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000435888	ENST00000311101		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
intron-intron	ENST00000435888	ENST00000435888		ChiTaRS3.1			BE142911	PARL	chr3	183564778	+	PARL	chr3	183579674	-
3UTR-3UTR	ENST00000261267	ENST00000591790		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000504904		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000292069		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000342634		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-intron	ENST00000261267	ENST00000589652		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000591790		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000504904		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000292069		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000342634		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-intron	ENST00000549690	ENST00000589652		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000591790		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000504904		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000292069		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000342634		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-intron	ENST00000548839	ENST00000589652		ChiTaRS3.1			BF445171	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3CDS	ENST00000298049	ENST00000298049		ChiTaRS3.1			BQ302601	EEF1A2	chr20	62126430	+	EEF1A2	chr20	62121865	-
intron-3CDS	ENST00000298049	ENST00000217182		ChiTaRS3.1			BQ302601	EEF1A2	chr20	62126430	+	EEF1A2	chr20	62121865	-
intron-3CDS	ENST00000217182	ENST00000298049		ChiTaRS3.1			BQ302601	EEF1A2	chr20	62126430	+	EEF1A2	chr20	62121865	-
intron-3CDS	ENST00000217182	ENST00000217182		ChiTaRS3.1			BQ302601	EEF1A2	chr20	62126430	+	EEF1A2	chr20	62121865	-
intron-3CDS	ENST00000430325	ENST00000430325		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000430325	ENST00000513948		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000430325	ENST00000433940		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000513948	ENST00000430325		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000513948	ENST00000513948		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000513948	ENST00000433940		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000433940	ENST00000430325		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000433940	ENST00000513948		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000433940	ENST00000433940		ChiTaRS3.1			AI820581	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-intron	ENST00000548898	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000548898	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548898	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000552067	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552067	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000420846	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000420846	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000548160	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000548160	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000546939	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000546939	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000552692	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552692	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000549117	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000549117	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000257857	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000257857	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000552754	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000552754	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000542001		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000416670		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000321897		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000541562		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000476162		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000547340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000450090		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000549458		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000475174		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000550773		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000383540		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000552560		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-3UTR	ENST00000550776	ENST00000489340		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000551709		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000415079		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000546854		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
intron-intron	ENST00000550776	ENST00000462929		ChiTaRS3.1			BF857641	CD63	chr12	56121103	+	VARS2	chr6	2186936	+
In-frame	ENST00000397269	ENST00000397269		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
In-frame	ENST00000397269	ENST00000362091		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
5CDS-intron	ENST00000397269	ENST00000470089		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
5CDS-intron	ENST00000397269	ENST00000379999		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
In-frame	ENST00000362091	ENST00000397269		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
In-frame	ENST00000362091	ENST00000362091		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
5CDS-intron	ENST00000362091	ENST00000470089		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
5CDS-intron	ENST00000362091	ENST00000379999		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
intron-3CDS	ENST00000470089	ENST00000397269		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
intron-3CDS	ENST00000470089	ENST00000362091		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
intron-intron	ENST00000470089	ENST00000470089		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
intron-intron	ENST00000470089	ENST00000379999		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
In-frame	ENST00000379999	ENST00000397269		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
In-frame	ENST00000379999	ENST00000362091		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
5CDS-intron	ENST00000379999	ENST00000470089		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
5CDS-intron	ENST00000379999	ENST00000379999		ChiTaRS3.1			N36571	FBXO18	chr10	5966447	+	FBXO18	chr10	5960410	+
intron-intron	ENST00000484698	ENST00000367178		ChiTaRS3.1			BG986771	LINC00882	chr3	106872972	+	SCAF8	chr6	155112810	+
intron-intron	ENST00000484698	ENST00000461219		ChiTaRS3.1			BG986771	LINC00882	chr3	106872972	+	SCAF8	chr6	155112810	+
intron-intron	ENST00000484698	ENST00000417268		ChiTaRS3.1			BG986771	LINC00882	chr3	106872972	+	SCAF8	chr6	155112810	+
intron-intron	ENST00000484698	ENST00000367186		ChiTaRS3.1			BG986771	LINC00882	chr3	106872972	+	SCAF8	chr6	155112810	+
intron-5UTR	ENST00000368301	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368301	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000361308	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000361308	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000347559	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000347559	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368300	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368300	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368299	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368299	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000448611	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000448611	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368297	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000368297	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000473598	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000473598	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000392353	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000392353	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000496738	ENST00000305124		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-5UTR	ENST00000496738	ENST00000393780		ChiTaRS3.1			AK123311	LMNA	chr1	156086800	+	GAP43	chr3	115342509	+
intron-intron	ENST00000367321	ENST00000367321		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000367307		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000478643		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367321		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367307		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000478643		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367321		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367307		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000478643		ChiTaRS3.1			AA829961	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
3UTR-intron	ENST00000405315	ENST00000546961		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000405315	ENST00000550891		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000405315	ENST00000354534		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000405315	ENST00000545061		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000407032	ENST00000546961		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000407032	ENST00000550891		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000407032	ENST00000354534		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000407032	ENST00000545061		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000485798	ENST00000546961		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000485798	ENST00000550891		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000485798	ENST00000354534		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000485798	ENST00000545061		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000263273	ENST00000546961		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000263273	ENST00000550891		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000263273	ENST00000354534		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
3UTR-intron	ENST00000263273	ENST00000545061		ChiTaRS3.1			BE818201	NUCB1	chr19	49425893	+	SCN8A	chr12	52201178	-
Frame-shit	ENST00000246533	ENST00000368094		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000246533	ENST00000361509		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
5CDS-5UTR	ENST00000246533	ENST00000493195		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
intron-3CDS	ENST00000589146	ENST00000368094		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
intron-3CDS	ENST00000589146	ENST00000361509		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
intron-5UTR	ENST00000589146	ENST00000493195		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000587718	ENST00000368094		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000587718	ENST00000361509		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
5CDS-5UTR	ENST00000587718	ENST00000493195		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000590874	ENST00000368094		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000590874	ENST00000361509		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
5CDS-5UTR	ENST00000590874	ENST00000493195		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000588815	ENST00000368094		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000588815	ENST00000361509		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
5CDS-5UTR	ENST00000588815	ENST00000493195		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000588780	ENST00000368094		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
Frame-shit	ENST00000588780	ENST00000361509		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
5CDS-5UTR	ENST00000588780	ENST00000493195		ChiTaRS3.1			BQ959731	CAPNS1	chr19	36632029	+	IGSF9	chr1	159899546	-
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000395850		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000533403		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000351554		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000415002		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BF510491	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-3CDS	ENST00000404241	ENST00000313732		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
intron-3CDS	ENST00000404241	ENST00000564466		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
intron-intron	ENST00000404241	ENST00000569488		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
5UTR-3CDS	ENST00000337304	ENST00000313732		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
5UTR-3CDS	ENST00000337304	ENST00000564466		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
5UTR-intron	ENST00000337304	ENST00000569488		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
intron-3CDS	ENST00000396680	ENST00000313732		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
intron-3CDS	ENST00000396680	ENST00000564466		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
intron-intron	ENST00000396680	ENST00000569488		ChiTaRS3.1			DA741051	ATF4	chr22	39916765	+	ZDHHC7	chr16	85015600	-
intron-3UTR	ENST00000395699	ENST00000395699		ChiTaRS3.1			BE006611	PURB	chr7	44916735	+	PURB	chr7	44919906	-
3UTR-intron	ENST00000301740	ENST00000014914		ChiTaRS3.1			AA627941	SRRM2	chr16	2821195	-	GPRC5A	chr12	13064230	-
3UTR-intron	ENST00000301740	ENST00000542056		ChiTaRS3.1			AA627941	SRRM2	chr16	2821195	-	GPRC5A	chr12	13064230	-
intron-intron	ENST00000574593	ENST00000014914		ChiTaRS3.1			AA627941	SRRM2	chr16	2821195	-	GPRC5A	chr12	13064230	-
intron-intron	ENST00000574593	ENST00000542056		ChiTaRS3.1			AA627941	SRRM2	chr16	2821195	-	GPRC5A	chr12	13064230	-
intron-intron	ENST00000252818	ENST00000523698		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000517876		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000521450		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000403027		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000524105		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000285896		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000520671		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000521583		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000519404		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000521402		ChiTaRS3.1			AW015591	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000320876	ENST00000225737		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000320876	ENST00000395536		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000320876	ENST00000572155		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000261598	ENST00000225737		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000261598	ENST00000395536		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000261598	ENST00000572155		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000609587	ENST00000225737		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000609587	ENST00000395536		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-intron	ENST00000609587	ENST00000572155		ChiTaRS3.1			DW435741	SMCHD1	chr18	2699032	+	AKAP10	chr17	19835070	-
intron-3CDS	ENST00000375110	ENST00000320985		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
intron-3CDS	ENST00000375110	ENST00000361642		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
intron-3UTR	ENST00000375110	ENST00000559858		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
intron-3UTR	ENST00000375110	ENST00000560721		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
intron-intron	ENST00000375110	ENST00000542815		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
intron-intron	ENST00000375110	ENST00000446923		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
Frame-shit	ENST00000319778	ENST00000320985		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
Frame-shit	ENST00000319778	ENST00000361642		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-3UTR	ENST00000319778	ENST00000559858		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-3UTR	ENST00000319778	ENST00000560721		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-intron	ENST00000319778	ENST00000542815		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-intron	ENST00000319778	ENST00000446923		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
Frame-shit	ENST00000263062	ENST00000320985		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
Frame-shit	ENST00000263062	ENST00000361642		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-3UTR	ENST00000263062	ENST00000559858		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-3UTR	ENST00000263062	ENST00000560721		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-intron	ENST00000263062	ENST00000542815		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5CDS-intron	ENST00000263062	ENST00000446923		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5UTR-3CDS	ENST00000480402	ENST00000320985		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5UTR-3CDS	ENST00000480402	ENST00000361642		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5UTR-3UTR	ENST00000480402	ENST00000559858		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5UTR-3UTR	ENST00000480402	ENST00000560721		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5UTR-intron	ENST00000480402	ENST00000542815		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
5UTR-intron	ENST00000480402	ENST00000446923		ChiTaRS3.1			DB111441	EPC1	chr10	32635691	-	ZEB1	chr10	31749965	+
intron-3CDS	ENST00000420415	ENST00000421182		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000357867		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000323926		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000336916		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000354785		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000357009		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000346544		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000345488		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000359671		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000446046		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000443816		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000432072		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000420415	ENST00000356005		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000420415	ENST00000490833		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000420415	ENST00000426059		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000421182		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000357867		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000323926		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000336916		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000354785		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000357009		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000346544		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000345488		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000359671		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000446046		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000443816		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000432072		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000360110	ENST00000356005		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000360110	ENST00000490833		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000360110	ENST00000426059		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000421182		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000357867		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000323926		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000336916		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000354785		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000357009		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000346544		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000345488		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000359671		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000446046		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000443816		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000432072		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000540528	ENST00000356005		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000540528	ENST00000490833		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000540528	ENST00000426059		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000421182		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000357867		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000323926		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000336916		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000354785		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000357009		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000346544		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000345488		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000359671		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000446046		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000443816		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000432072		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000392396	ENST00000356005		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000392396	ENST00000490833		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000392396	ENST00000426059		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000421182		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000357867		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000323926		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000336916		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000354785		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000357009		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000346544		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000345488		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000359671		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000446046		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000443816		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000432072		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000535031	ENST00000356005		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000535031	ENST00000490833		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000535031	ENST00000426059		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000421182		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000357867		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000323926		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000336916		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000354785		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000357009		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000346544		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000345488		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000359671		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000446046		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000443816		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000432072		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-3CDS	ENST00000465288	ENST00000356005		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000465288	ENST00000490833		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
intron-intron	ENST00000465288	ENST00000426059		ChiTaRS3.1			AW854071	TFRC	chr3	195777316	-	FN1	chr2	216238086	+
3UTR-3UTR	ENST00000375990	ENST00000579649		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-intron	ENST00000375990	ENST00000582380		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000375990	ENST00000577222		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000375990	ENST00000347512		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000375990	ENST00000579446		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000375990	ENST00000394580		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000259253	ENST00000579649		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-intron	ENST00000259253	ENST00000582380		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000259253	ENST00000577222		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000259253	ENST00000347512		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000259253	ENST00000579446		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000259253	ENST00000394580		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
intron-3UTR	ENST00000465836	ENST00000579649		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
intron-intron	ENST00000465836	ENST00000582380		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
intron-3UTR	ENST00000465836	ENST00000577222		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
intron-3UTR	ENST00000465836	ENST00000347512		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
intron-3UTR	ENST00000465836	ENST00000579446		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
intron-3UTR	ENST00000465836	ENST00000394580		ChiTaRS3.1			BE881501	UGGT1	chr2	128947822	+	RPL36	chr19	5691635	+
3UTR-3UTR	ENST00000301923	ENST00000301923		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-intron	ENST00000301923	ENST00000402203		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000301923	ENST00000454349		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000301923	ENST00000335727		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-intron	ENST00000301923	ENST00000497559		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-3UTR	ENST00000402203	ENST00000301923		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-intron	ENST00000402203	ENST00000402203		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-3UTR	ENST00000402203	ENST00000454349		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-3UTR	ENST00000402203	ENST00000335727		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-intron	ENST00000402203	ENST00000497559		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000454349	ENST00000301923		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-intron	ENST00000454349	ENST00000402203		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000454349	ENST00000454349		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000454349	ENST00000335727		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-intron	ENST00000454349	ENST00000497559		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000335727	ENST00000301923		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-intron	ENST00000335727	ENST00000402203		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000335727	ENST00000454349		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-3UTR	ENST00000335727	ENST00000335727		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
3UTR-intron	ENST00000335727	ENST00000497559		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-3UTR	ENST00000497559	ENST00000301923		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-intron	ENST00000497559	ENST00000402203		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-3UTR	ENST00000497559	ENST00000454349		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-3UTR	ENST00000497559	ENST00000335727		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-intron	ENST00000497559	ENST00000497559		ChiTaRS3.1			BU736131	TNRC6B	chr22	40724957	-	TNRC6B	chr22	40725836	-
intron-intron	ENST00000369002	ENST00000583129		ChiTaRS3.1			BF838311	SEC63	chr6	108192413	+	MIR548O2	chr8	29921030	-
intron-intron	ENST00000460009	ENST00000583129		ChiTaRS3.1			BF838311	SEC63	chr6	108192413	+	MIR548O2	chr8	29921030	-
In-frame	ENST00000409469	ENST00000409469		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
In-frame	ENST00000409469	ENST00000602748		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
In-frame	ENST00000409469	ENST00000325222		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
Frame-shit	ENST00000602748	ENST00000409469		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
Frame-shit	ENST00000602748	ENST00000602748		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
Frame-shit	ENST00000602748	ENST00000325222		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
Frame-shit	ENST00000325222	ENST00000409469		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
Frame-shit	ENST00000325222	ENST00000602748		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
Frame-shit	ENST00000325222	ENST00000325222		ChiTaRS3.1			BM127921	CUL1	chr7	148497664	-	CUL1	chr7	148496416	+
5CDS-intron	ENST00000288398	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000288398	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000288398	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000288398	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000288398	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000358278	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000358278	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000358278	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000358278	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000358278	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
intron-intron	ENST00000560445	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
intron-intron	ENST00000560445	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
intron-intron	ENST00000560445	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
intron-intron	ENST00000560445	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
intron-intron	ENST00000560445	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000403994	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000403994	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000403994	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000403994	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000403994	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000357980	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000357980	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000357980	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000357980	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000357980	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559556	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559556	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559556	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559556	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559556	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559397	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559397	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559397	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559397	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559397	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000267996	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000267996	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000267996	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000267996	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000267996	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000334895	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000334895	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000334895	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000334895	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000334895	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000404484	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000404484	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000404484	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000404484	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000404484	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000560959	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000560959	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000560959	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000560959	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000560959	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559281	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559281	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559281	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559281	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000559281	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000317516	ENST00000378946		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000317516	ENST00000378943		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000317516	ENST00000378945		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000317516	ENST00000427190		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
5CDS-intron	ENST00000317516	ENST00000378941		ChiTaRS3.1			AA089671	TPM1	chr15	63353135	+	GK	chrX	30686569	+
intron-3UTR	ENST00000339241	ENST00000339241		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
intron-intron	ENST00000339241	ENST00000515726		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
intron-3UTR	ENST00000339241	ENST00000394339		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
3UTR-3UTR	ENST00000515726	ENST00000339241		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
3UTR-intron	ENST00000515726	ENST00000515726		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
3UTR-3UTR	ENST00000515726	ENST00000394339		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
intron-3UTR	ENST00000394339	ENST00000339241		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
intron-intron	ENST00000394339	ENST00000515726		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
intron-3UTR	ENST00000394339	ENST00000394339		ChiTaRS3.1			AU185671	SPRY1	chr4	124318926	-	SPRY1	chr4	124324252	-
intron-intron	ENST00000300134	ENST00000300134		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000300134	ENST00000538913		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000300134	ENST00000543873		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000300134	ENST00000556155		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000300134	ENST00000537215		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000300134	ENST00000454075		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000538913	ENST00000300134		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000538913	ENST00000538913		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000538913	ENST00000543873		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000538913	ENST00000556155		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000538913	ENST00000537215		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000538913	ENST00000454075		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000543873	ENST00000300134		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000543873	ENST00000538913		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000543873	ENST00000543873		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000543873	ENST00000556155		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000543873	ENST00000537215		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000543873	ENST00000454075		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000556155	ENST00000300134		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000556155	ENST00000538913		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000556155	ENST00000543873		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000556155	ENST00000556155		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000556155	ENST00000537215		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000556155	ENST00000454075		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000537215	ENST00000300134		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000537215	ENST00000538913		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000537215	ENST00000543873		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000537215	ENST00000556155		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000537215	ENST00000537215		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000537215	ENST00000454075		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000454075	ENST00000300134		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000454075	ENST00000538913		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000454075	ENST00000543873		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000454075	ENST00000556155		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000454075	ENST00000537215		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000454075	ENST00000454075		ChiTaRS3.1			BP379151	STAT6	chr12	57492897	-	STAT6	chr12	57498235	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AA720761	IGHG1	chr14	106320770	+	IGHG1	chr14	106320718	-
intron-intron	ENST00000260327	ENST00000260327		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000396780		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000558966		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000558373		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000561189		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000260327		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000396780		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000558966		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000558373		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000561189		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000260327		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000396780		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000558966		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000558373		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000561189		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000260327		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000396780		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000558966		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000558373		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000561189		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000260327		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000396780		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000558966		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000558373		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000561189		ChiTaRS3.1			AA682671	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-3UTR	ENST00000486687	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000486687	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000486687	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000486687	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000486687	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-intron	ENST00000486687	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000350136	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000350136	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000350136	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000350136	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000350136	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-intron	ENST00000350136	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000392045	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000392045	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000392045	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000392045	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000392045	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-intron	ENST00000392045	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000417495	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000417495	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000417495	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000417495	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000417495	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-intron	ENST00000417495	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000343805	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000343805	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000343805	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000343805	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000343805	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-intron	ENST00000343805	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000420434	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000420434	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000420434	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000420434	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-3UTR	ENST00000420434	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
5CDS-intron	ENST00000420434	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000373645	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000373645	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000373645	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000373645	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000373645	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-intron	ENST00000373645	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000544128	ENST00000450536		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000544128	ENST00000367663		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000544128	ENST00000409812		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000544128	ENST00000258062		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-3UTR	ENST00000544128	ENST00000415951		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
intron-intron	ENST00000544128	ENST00000531675		ChiTaRS3.1			BE926221	SP140	chr2	231110612	-	REPS1	chr6	139226094	-
3UTR-intron	ENST00000175756	ENST00000402881		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
3UTR-intron	ENST00000175756	ENST00000478342		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
3UTR-3UTR	ENST00000175756	ENST00000325301		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
3UTR-3UTR	ENST00000175756	ENST00000404569		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-intron	ENST00000347849	ENST00000402881		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-intron	ENST00000347849	ENST00000478342		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-3UTR	ENST00000347849	ENST00000325301		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-3UTR	ENST00000347849	ENST00000404569		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-intron	ENST00000420717	ENST00000402881		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-intron	ENST00000420717	ENST00000478342		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-3UTR	ENST00000420717	ENST00000325301		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-3UTR	ENST00000420717	ENST00000404569		ChiTaRS3.1			BF945261	PTPN18	chr2	131132479	+	MIEF1	chr22	39910329	+
intron-3CDS	ENST00000435159	ENST00000261769		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000435159	ENST00000422392		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3UTR	ENST00000435159	ENST00000562836		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000315208	ENST00000261769		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000315208	ENST00000422392		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3UTR	ENST00000315208	ENST00000562836		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000537538	ENST00000261769		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000537538	ENST00000422392		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3UTR	ENST00000537538	ENST00000562836		ChiTaRS3.1			BE816621	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-intron	ENST00000381567	ENST00000459639		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381567	ENST00000380276		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381567	ENST00000291552		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381567	ENST00000398137		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381567	ENST00000486519		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000467626	ENST00000459639		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000467626	ENST00000380276		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000467626	ENST00000291552		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000467626	ENST00000398137		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000467626	ENST00000486519		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381566	ENST00000459639		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381566	ENST00000380276		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381566	ENST00000291552		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381566	ENST00000398137		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
intron-intron	ENST00000381566	ENST00000486519		ChiTaRS3.1			AK123701	CRLF2	chrY	1464447	+	U2AF1	chr21	44514580	-
3UTR-intron	ENST00000534336	ENST00000563675		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000541464		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000381414		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000396229		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000542583		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000219821		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000561503		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-intron	ENST00000534336	ENST00000564959		ChiTaRS3.1			BG961411	MALAT1	chr11	65266847	-	TMC5	chr16	19482851	-
3UTR-3CDS	ENST00000446856	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000446856	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000446856	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000446856	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000446856	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000446856	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000446856	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000446856	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000446856	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000264758	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000264758	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000264758	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000264758	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000264758	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000264758	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000264758	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000264758	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000264758	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000398125	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000398125	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398125	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398125	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398125	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398125	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398125	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398125	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000398125	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000513328	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000513328	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000513328	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000513328	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000513328	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000513328	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000513328	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000513328	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000513328	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000503455	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000503455	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000503455	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000503455	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000503455	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000503455	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000503455	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000503455	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000503455	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000355842	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000355842	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000355842	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000355842	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000355842	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000355842	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000355842	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000355842	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000355842	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3CDS	ENST00000398123	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3CDS	ENST00000398123	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000398123	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000398123	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000398123	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000398123	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000398123	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000398123	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-intron	ENST00000398123	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000398129	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3CDS	ENST00000398129	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398129	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398129	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398129	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398129	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398129	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-3UTR	ENST00000398129	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
3UTR-intron	ENST00000398129	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3CDS	ENST00000538860	ENST00000446856		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3CDS	ENST00000538860	ENST00000264758		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000538860	ENST00000398125		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000538860	ENST00000513328		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000538860	ENST00000503455		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000538860	ENST00000355842		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000538860	ENST00000398123		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000538860	ENST00000398129		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-intron	ENST00000538860	ENST00000538860		ChiTaRS3.1			D44931	ADD1	chr4	2930438	+	ADD1	chr4	2929954	+
intron-3UTR	ENST00000481195	ENST00000481195		ChiTaRS3.1			AA598481	PPP2CA	chr5	133532933	-	PPP2CA	chr5	133532869	+
intron-intron	ENST00000481195	ENST00000231504		ChiTaRS3.1			AA598481	PPP2CA	chr5	133532933	-	PPP2CA	chr5	133532869	+
intron-3UTR	ENST00000231504	ENST00000481195		ChiTaRS3.1			AA598481	PPP2CA	chr5	133532933	-	PPP2CA	chr5	133532869	+
intron-intron	ENST00000231504	ENST00000231504		ChiTaRS3.1			AA598481	PPP2CA	chr5	133532933	-	PPP2CA	chr5	133532869	+
In-frame	ENST00000264555	ENST00000405271		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000264555	ENST00000263735		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000413872	ENST00000405271		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000413872	ENST00000263735		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000533464	ENST00000405271		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000533464	ENST00000263735		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000416188	ENST00000405271		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
In-frame	ENST00000416188	ENST00000263735		ChiTaRS3.1			BF806271	PHRF1	chr11	610685	-	EPCAM	chr2	47606170	+
intron-intron	ENST00000352896	ENST00000352896		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000352896	ENST00000368475		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000352896	ENST00000338891		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000352896	ENST00000521531		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000352896	ENST00000522284		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000368475	ENST00000352896		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000368475	ENST00000368475		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000368475	ENST00000338891		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000368475	ENST00000521531		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000368475	ENST00000522284		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000338891	ENST00000352896		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000338891	ENST00000368475		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000338891	ENST00000338891		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000338891	ENST00000521531		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000338891	ENST00000522284		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000521531	ENST00000352896		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000521531	ENST00000368475		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000521531	ENST00000338891		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000521531	ENST00000521531		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000521531	ENST00000522284		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000522284	ENST00000352896		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000522284	ENST00000368475		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000522284	ENST00000338891		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000522284	ENST00000521531		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
intron-intron	ENST00000522284	ENST00000522284		ChiTaRS3.1			BF923701	FAM184A	chr6	119345981	+	FAM184A	chr6	119324059	+
5CDS-3UTR	ENST00000301011	ENST00000233143		ChiTaRS3.1			BG113811	ZC3H18	chr16	88691148	+	TMSB10	chr2	85133696	+
5CDS-3UTR	ENST00000452588	ENST00000233143		ChiTaRS3.1			BG113811	ZC3H18	chr16	88691148	+	TMSB10	chr2	85133696	+
3UTR-3CDS	ENST00000369466	ENST00000388890		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
3UTR-3CDS	ENST00000369466	ENST00000323510		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
3UTR-3CDS	ENST00000369466	ENST00000483173		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
3UTR-3CDS	ENST00000369466	ENST00000467963		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
3UTR-intron	ENST00000369466	ENST00000435709		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
3UTR-intron	ENST00000369466	ENST00000494422		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-3CDS	ENST00000480701	ENST00000388890		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-3CDS	ENST00000480701	ENST00000323510		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-3CDS	ENST00000480701	ENST00000483173		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-3CDS	ENST00000480701	ENST00000467963		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-intron	ENST00000480701	ENST00000435709		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-intron	ENST00000480701	ENST00000494422		ChiTaRS3.1			CB116761	TTF2	chr1	117644804	-	BRD9	chr5	871681	-
intron-intron	ENST00000566780	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000283558		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000375630		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000487903		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000375645		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000419448		ChiTaRS3.1			BF871751	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000604938	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401010	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000339388	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000369323	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000605317	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000479926	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000604894	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401009	ENST00000369219		ChiTaRS3.1			BC065231	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000378119	ENST00000384994		ChiTaRS3.1			BE076991	C6orf62	chr6	24711637	+	NEAT1	chr11	65192131	-
intron-intron	ENST00000540769	ENST00000384994		ChiTaRS3.1			BE076991	C6orf62	chr6	24711637	+	NEAT1	chr11	65192131	-
intron-intron	ENST00000378102	ENST00000384994		ChiTaRS3.1			BE076991	C6orf62	chr6	24711637	+	NEAT1	chr11	65192131	-
intron-3CDS	ENST00000384994	ENST00000245907		ChiTaRS3.1			BF880801	NEAT1	chr11	65193449	-	C3	chr19	6702552	-
intron-intron	ENST00000384994	ENST00000599668		ChiTaRS3.1			BF880801	NEAT1	chr11	65193449	-	C3	chr19	6702552	-
intron-intron	ENST00000348715	ENST00000324262		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000348715	ENST00000579847		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000348715	ENST00000580229		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000348715	ENST00000324301		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000397647	ENST00000324262		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000397647	ENST00000579847		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000397647	ENST00000580229		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000397647	ENST00000324301		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263335	ENST00000324262		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263335	ENST00000579847		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263335	ENST00000580229		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263335	ENST00000324301		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000429538	ENST00000324262		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000429538	ENST00000579847		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000429538	ENST00000580229		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000429538	ENST00000324301		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263334	ENST00000324262		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263334	ENST00000579847		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263334	ENST00000580229		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-intron	ENST00000263334	ENST00000324301		ChiTaRS3.1			BF853131	PAX8	chr2	114001208	-	CNDP2	chr18	72176450	-
intron-5UTR	ENST00000504156	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000504156	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000504156	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000504156	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000457527	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000457527	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000457527	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000457527	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000431330	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000431330	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000431330	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000431330	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000504366	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000504366	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000504366	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000504366	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000448240	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000448240	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000448240	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000448240	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000307633	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000307633	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000307633	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000307633	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000438307	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000438307	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000438307	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000438307	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000415192	ENST00000279488		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-5UTR	ENST00000415192	ENST00000308385		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000415192	ENST00000547291		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
intron-intron	ENST00000415192	ENST00000547140		ChiTaRS3.1			DA527301	HARS	chr5	140062885	-	DUSP6	chr12	89746181	-
Frame-shit	ENST00000505113	ENST00000505113		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000505113	ENST00000316418		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000505113	ENST00000512529		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000505113	ENST00000515206		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000505113	ENST00000506456		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000316418	ENST00000505113		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000316418	ENST00000316418		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000316418	ENST00000512529		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000316418	ENST00000515206		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000316418	ENST00000506456		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000512529	ENST00000505113		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000512529	ENST00000316418		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000512529	ENST00000512529		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000512529	ENST00000515206		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000512529	ENST00000506456		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
intron-3CDS	ENST00000515206	ENST00000505113		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
intron-3CDS	ENST00000515206	ENST00000316418		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
intron-3CDS	ENST00000515206	ENST00000512529		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
intron-intron	ENST00000515206	ENST00000515206		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
intron-intron	ENST00000515206	ENST00000506456		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000506456	ENST00000505113		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000506456	ENST00000316418		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
Frame-shit	ENST00000506456	ENST00000512529		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000506456	ENST00000515206		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
5CDS-intron	ENST00000506456	ENST00000506456		ChiTaRS3.1			BM723201	AHRR	chr5	427981	-	AHRR	chr5	428033	+
intron-3CDS	ENST00000354193	ENST00000261167		ChiTaRS3.1			AI337271	SVIP	chr11	22849418	+	WBP11	chr12	14953695	+
intron-3CDS	ENST00000533774	ENST00000261167		ChiTaRS3.1			AI337271	SVIP	chr11	22849418	+	WBP11	chr12	14953695	+
intron-3CDS	ENST00000540367	ENST00000327827		ChiTaRS3.1			BM970771	CPT1A	chr11	68522488	+	C16orf72	chr16	9210755	-
intron-3CDS	ENST00000376618	ENST00000327827		ChiTaRS3.1			BM970771	CPT1A	chr11	68522488	+	C16orf72	chr16	9210755	-
intron-3CDS	ENST00000265641	ENST00000327827		ChiTaRS3.1			BM970771	CPT1A	chr11	68522488	+	C16orf72	chr16	9210755	-
intron-3CDS	ENST00000539743	ENST00000327827		ChiTaRS3.1			BM970771	CPT1A	chr11	68522488	+	C16orf72	chr16	9210755	-
intron-3CDS	ENST00000537756	ENST00000327827		ChiTaRS3.1			BM970771	CPT1A	chr11	68522488	+	C16orf72	chr16	9210755	-
intron-3CDS	ENST00000538994	ENST00000327827		ChiTaRS3.1			BM970771	CPT1A	chr11	68522488	+	C16orf72	chr16	9210755	-
intron-intron	ENST00000425759	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000425759	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000292733	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000542773	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000263205	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000406969	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000382974	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000541476	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000425759		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000292733		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000542773		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000263205		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000406969		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000382974		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000541476		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-intron	ENST00000478831	ENST00000478831		ChiTaRS3.1			BF999641	MED15	chr22	20923723	-	MED15	chr22	20929015	-
intron-3CDS	ENST00000243997	ENST00000389266		ChiTaRS3.1			BM753471	ATP5E	chr20	57605368	-	GARS	chr7	30643155	+
intron-3CDS	ENST00000395663	ENST00000389266		ChiTaRS3.1			BM753471	ATP5E	chr20	57605368	-	GARS	chr7	30643155	+
intron-3CDS	ENST00000395659	ENST00000389266		ChiTaRS3.1			BM753471	ATP5E	chr20	57605368	-	GARS	chr7	30643155	+
intron-3CDS	ENST00000522684	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522684	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522684	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522684	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522684	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522684	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522684	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522684	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000535192	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000535192	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000535192	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000535192	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000535192	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000535192	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000535192	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519465	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519465	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519465	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519465	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519465	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519465	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519465	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517887	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517887	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517887	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517887	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517887	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517887	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517887	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000521059	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000521059	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000521059	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000521059	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000521059	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000521059	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000521059	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000395218	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000395218	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000395218	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000395218	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000395218	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000395218	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000395218	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000538769	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000538769	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000538769	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000538769	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000538769	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000538769	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000538769	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000340930	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000340930	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000340930	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000340930	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000340930	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000340930	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000340930	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519419	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519419	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519419	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519419	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519419	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519419	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519419	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000430260	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000430260	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000430260	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000430260	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000430260	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000430260	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000430260	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519881	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519881	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519881	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519881	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519881	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519881	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519881	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520892	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520892	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520892	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520892	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520892	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520892	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520892	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000519635	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519635	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519635	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519635	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519635	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519635	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000519635	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000517712	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517712	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517712	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517712	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517712	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517712	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000517712	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000522950	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522950	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522950	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522950	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522950	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522950	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000522950	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000522684		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000535192		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000519465		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000517887		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000521059		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000395218		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000538769		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000340930		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000519419		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-3CDS	ENST00000520151	ENST00000430260		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520151	ENST00000519881		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520151	ENST00000520892		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520151	ENST00000519635		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520151	ENST00000517712		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520151	ENST00000522950		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
intron-intron	ENST00000520151	ENST00000520151		ChiTaRS3.1			AW577351	PTK2	chr8	141683745	-	PTK2	chr8	141684439	-
5CDS-3UTR	ENST00000246554	ENST00000260197		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000246554	ENST00000532451		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000246554	ENST00000525532		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000246554	ENST00000532694		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000246554	ENST00000534286		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000246554	ENST00000527934		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-3UTR	ENST00000592141	ENST00000260197		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000592141	ENST00000532451		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000592141	ENST00000525532		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000592141	ENST00000532694		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000592141	ENST00000534286		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000592141	ENST00000527934		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-3UTR	ENST00000392201	ENST00000260197		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000392201	ENST00000532451		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000392201	ENST00000525532		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000392201	ENST00000532694		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000392201	ENST00000534286		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
5CDS-intron	ENST00000392201	ENST00000527934		ChiTaRS3.1			AA573421	COX6B1	chr19	36149533	-	SORL1	chr11	121503206	-
intron-intron	ENST00000435085	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000435085	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000307198	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000419228	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000447974	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000289488	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539271	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000423494	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000539587	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000538478	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000324866	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000439209	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000541614	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000536917	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000435085		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000307198		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000419228		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000447974		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000289488		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000539271		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000423494		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000539587		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000538478		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000324866		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000439209		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000541614		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000536917		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000440313	ENST00000440313		ChiTaRS3.1			R19501	LRTOMT	chr11	71809358	-	LRTOMT	chr11	71810236	-
intron-intron	ENST00000330590	ENST00000602767		ChiTaRS3.1			BP425011	DEFA5	chr8	6914081	+	GAS5-AS1	chr1	173833152	-
intron-3UTR	ENST00000401084	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000401084	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000401084	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000401084	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000401084	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000401084	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000401084	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264203	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264203	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264203	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264203	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000264203	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000264203	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264203	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375142	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375142	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375142	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375142	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000375142	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000375142	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375142	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000433834	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000433834	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000433834	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000433834	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000433834	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000433834	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000433834	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264202	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264202	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264202	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264202	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000264202	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000264202	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000264202	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000482808	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000482808	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000482808	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000482808	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000482808	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000482808	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000482808	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375144	ENST00000401084		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375144	ENST00000264203		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375144	ENST00000375142		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375144	ENST00000433834		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000375144	ENST00000264202		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-intron	ENST00000375144	ENST00000482808		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
intron-3UTR	ENST00000375144	ENST00000375144		ChiTaRS3.1			BI833201	CAPZB	chr1	19665924	+	CAPZB	chr1	19665878	-
Frame-shit	ENST00000333167	ENST00000333167		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
Frame-shit	ENST00000333167	ENST00000301810		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000333167	ENST00000480865		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000333167	ENST00000450296		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000333167	ENST00000544624		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-3UTR	ENST00000333167	ENST00000444607		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
Frame-shit	ENST00000301810	ENST00000333167		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
Frame-shit	ENST00000301810	ENST00000301810		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000301810	ENST00000480865		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000301810	ENST00000450296		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000301810	ENST00000544624		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-3UTR	ENST00000301810	ENST00000444607		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5UTR-3CDS	ENST00000480865	ENST00000333167		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5UTR-3CDS	ENST00000480865	ENST00000301810		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5UTR-5UTR	ENST00000480865	ENST00000480865		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5UTR-5UTR	ENST00000480865	ENST00000450296		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5UTR-5UTR	ENST00000480865	ENST00000544624		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5UTR-3UTR	ENST00000480865	ENST00000444607		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
Frame-shit	ENST00000450296	ENST00000333167		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
Frame-shit	ENST00000450296	ENST00000301810		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000450296	ENST00000480865		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000450296	ENST00000450296		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-5UTR	ENST00000450296	ENST00000544624		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-3UTR	ENST00000450296	ENST00000444607		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-3CDS	ENST00000544624	ENST00000333167		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-3CDS	ENST00000544624	ENST00000301810		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-5UTR	ENST00000544624	ENST00000480865		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-5UTR	ENST00000544624	ENST00000450296		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-5UTR	ENST00000544624	ENST00000544624		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-3UTR	ENST00000544624	ENST00000444607		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-3CDS	ENST00000444607	ENST00000333167		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-3CDS	ENST00000444607	ENST00000301810		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-5UTR	ENST00000444607	ENST00000480865		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-5UTR	ENST00000444607	ENST00000450296		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-5UTR	ENST00000444607	ENST00000544624		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
intron-3UTR	ENST00000444607	ENST00000444607		ChiTaRS3.1			AA405551	ACAA1	chr3	38167318	-	ACAA1	chr3	38168161	-
5CDS-intron	ENST00000605788	ENST00000554411		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000605788	ENST00000336557		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000605788	ENST00000258807		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000605788	ENST00000555817		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000405356	ENST00000554411		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000405356	ENST00000336557		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000405356	ENST00000258807		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000405356	ENST00000555817		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000603742	ENST00000554411		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000603742	ENST00000336557		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000603742	ENST00000258807		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000603742	ENST00000555817		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000488254	ENST00000554411		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000488254	ENST00000336557		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000488254	ENST00000258807		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
5CDS-intron	ENST00000488254	ENST00000555817		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
3UTR-intron	ENST00000477977	ENST00000554411		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
3UTR-intron	ENST00000477977	ENST00000336557		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
3UTR-intron	ENST00000477977	ENST00000258807		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
3UTR-intron	ENST00000477977	ENST00000555817		ChiTaRS3.1			BF843971	NOLC1	chr10	103920796	-	CIDEB	chr14	24775830	+
intron-intron	ENST00000485046	ENST00000327892		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000435534		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000330914		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000396389		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000396384		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000421473		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000549614		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000413547		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000419551		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000454620		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000422674		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000548023		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000435546		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000420400		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000453350		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000419792		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000547690		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000436335		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000425136		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000444441		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000422650		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000547695		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000454454		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000412136		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000446385		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000383564		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000551208		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000400531		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000400534		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000400530		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000436628		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000549902		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000437490		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000426754		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000425102		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000432462		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000549654		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000427480		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000424734		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000485046	ENST00000420618		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000327892		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000435534		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000330914		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000396389		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000396384		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000421473		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000549614		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000413547		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000419551		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000454620		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000422674		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000548023		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000435546		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000420400		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000453350		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000419792		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000547690		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000436335		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000425136		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000444441		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000422650		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000547695		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000454454		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000412136		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000446385		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000383564		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000551208		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000400531		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000400534		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000400530		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000436628		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000549902		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000437490		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000426754		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000425102		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000432462		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000549654		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000427480		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000424734		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000376369	ENST00000420618		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000327892		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000435534		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000330914		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000396389		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000396384		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000421473		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000549614		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000413547		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000419551		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000454620		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000422674		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000548023		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000435546		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000420400		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000453350		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000419792		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000547690		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000436335		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000425136		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000444441		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000422650		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000547695		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000454454		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000412136		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000446385		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000383564		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000551208		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000400531		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000400534		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000400530		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000436628		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000549902		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000437490		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000426754		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000425102		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000432462		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000549654		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000427480		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000424734		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
3UTR-intron	ENST00000196061	ENST00000420618		ChiTaRS3.1			AA948311	PLOD1	chr1	12035371	-	TUBB	chr6	2023954	-
intron-intron	ENST00000356929	ENST00000420083		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-3UTR	ENST00000356929	ENST00000449870		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-3UTR	ENST00000356929	ENST00000318511		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000407004		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000589998		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000250241		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000592763		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000588657		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000590261		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
intron-3UTR	ENST00000356929	ENST00000586544		ChiTaRS3.1			BI036811	ZNF708	chr19	21479526	-	ILF3	chr19	10801555	+
Frame-shit	ENST00000262544	ENST00000262544		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
Frame-shit	ENST00000262544	ENST00000336714		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
Frame-shit	ENST00000262544	ENST00000377475		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
Frame-shit	ENST00000262544	ENST00000377465		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
5CDS-intron	ENST00000262544	ENST00000494645		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000336714	ENST00000262544		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000336714	ENST00000336714		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000336714	ENST00000377475		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000336714	ENST00000377465		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
5CDS-intron	ENST00000336714	ENST00000494645		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377475	ENST00000262544		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377475	ENST00000336714		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377475	ENST00000377475		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377475	ENST00000377465		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
5CDS-intron	ENST00000377475	ENST00000494645		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377465	ENST00000262544		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377465	ENST00000336714		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377465	ENST00000377475		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
In-frame	ENST00000377465	ENST00000377465		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
5CDS-intron	ENST00000377465	ENST00000494645		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
intron-3CDS	ENST00000494645	ENST00000262544		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
intron-3CDS	ENST00000494645	ENST00000336714		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
intron-3CDS	ENST00000494645	ENST00000377475		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
intron-3CDS	ENST00000494645	ENST00000377465		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
intron-intron	ENST00000494645	ENST00000494645		ChiTaRS3.1			BG222141	SEC23B	chr20	18541377	+	SEC23B	chr20	18535026	-
Frame-shit	ENST00000233575	ENST00000268483		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
Frame-shit	ENST00000233575	ENST00000423037		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
Frame-shit	ENST00000233575	ENST00000426362		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
intron-3CDS	ENST00000543024	ENST00000268483		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
intron-3CDS	ENST00000543024	ENST00000423037		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
intron-3CDS	ENST00000543024	ENST00000426362		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
Frame-shit	ENST00000537606	ENST00000268483		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
Frame-shit	ENST00000537606	ENST00000423037		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
Frame-shit	ENST00000537606	ENST00000426362		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
5UTR-3CDS	ENST00000542478	ENST00000268483		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
5UTR-3CDS	ENST00000542478	ENST00000423037		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
5UTR-3CDS	ENST00000542478	ENST00000426362		ChiTaRS3.1			DA980261	SNX17	chr2	27595535	+	TXNL4B	chr16	72120550	-
3UTR-intron	ENST00000279873	ENST00000273009		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
3UTR-intron	ENST00000279873	ENST00000360410		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
3UTR-intron	ENST00000279873	ENST00000325385		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
3UTR-intron	ENST00000279873	ENST00000409401		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
3UTR-intron	ENST00000279873	ENST00000409307		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
3UTR-intron	ENST00000279873	ENST00000470087		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-intron	ENST00000309334	ENST00000273009		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-intron	ENST00000309334	ENST00000360410		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-intron	ENST00000309334	ENST00000325385		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-intron	ENST00000309334	ENST00000409401		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-intron	ENST00000309334	ENST00000409307		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-intron	ENST00000309334	ENST00000470087		ChiTaRS3.1			BF995991	ARID5B	chr10	63853753	-	DIS3L2	chr2	233182809	+
intron-3CDS	ENST00000317635	ENST00000301335		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000317635	ENST00000571650		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000317635	ENST00000382147		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000317635	ENST00000412517		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-intron	ENST00000317635	ENST00000574274		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000584432	ENST00000301335		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000584432	ENST00000571650		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000584432	ENST00000382147		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000584432	ENST00000412517		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-intron	ENST00000584432	ENST00000574274		ChiTaRS3.1			DA828211	TMEM11	chr17	21117763	+	SLC43A2	chr17	1489351	-
intron-3CDS	ENST00000262953	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000262953	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000262953	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000262953	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000262953	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000262953	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000262953	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000262953	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000262953	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000455444	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000455444	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000455444	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000455444	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000455444	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000455444	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000455444	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000455444	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000455444	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000591529	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000591529	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000591529	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000591529	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000591529	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000591529	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000591529	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000591529	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000591529	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000586422	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000586422	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000586422	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000586422	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000586422	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000586422	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000586422	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000586422	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000586422	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000447365	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000447365	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000447365	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000447365	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000447365	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000447365	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000447365	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000447365	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000447365	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000443826	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000443826	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000443826	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000443826	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000443826	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000443826	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000443826	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000443826	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000443826	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000590536	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000590536	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000590536	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000590536	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000590536	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000590536	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000590536	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000590536	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000590536	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000426948	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000426948	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000426948	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000426948	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000426948	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000426948	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000426948	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000426948	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000426948	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000587217	ENST00000262953		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000587217	ENST00000455444		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-3CDS	ENST00000587217	ENST00000591529		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000587217	ENST00000586422		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000587217	ENST00000447365		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000587217	ENST00000443826		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000587217	ENST00000590536		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000587217	ENST00000426948		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
intron-intron	ENST00000587217	ENST00000587217		ChiTaRS3.1			BF806201	TLE2	chr19	3005504	-	TLE2	chr19	3006567	-
3UTR-3UTR	ENST00000534336	ENST00000204566		ChiTaRS3.1			AW802671	MALAT1	chr11	65266845	+	SPG21	chr15	65255638	+
3UTR-3UTR	ENST00000534336	ENST00000559199		ChiTaRS3.1			AW802671	MALAT1	chr11	65266845	+	SPG21	chr15	65255638	+
3UTR-3UTR	ENST00000534336	ENST00000433215		ChiTaRS3.1			AW802671	MALAT1	chr11	65266845	+	SPG21	chr15	65255638	+
3UTR-3UTR	ENST00000534336	ENST00000416889		ChiTaRS3.1			AW802671	MALAT1	chr11	65266845	+	SPG21	chr15	65255638	+
3UTR-intron	ENST00000534336	ENST00000560564		ChiTaRS3.1			AW802671	MALAT1	chr11	65266845	+	SPG21	chr15	65255638	+
intron-intron	ENST00000237247	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000237247	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371039	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371035	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000468286	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371036	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000371037	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000315677		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000581527		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000400147		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000400149		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000400155		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000400150		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000584874		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000534970		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000539435		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000581699		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000400145		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000515196		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000435165	ENST00000478161		ChiTaRS3.1			BF955391	SGIP1	chr1	67084702	-	DLGAP1	chr18	4264373	-
intron-intron	ENST00000409068	ENST00000398896		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000398898		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000417901		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000453664		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000398892		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000398888		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000434032		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409068	ENST00000488993		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000398896		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000398898		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000417901		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000453664		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000398892		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000398888		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000434032		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000409085	ENST00000488993		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000398896		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000398898		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000417901		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000453664		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000398892		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000398888		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000434032		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000406297	ENST00000488993		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000398896		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000398898		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000417901		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000453664		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000398892		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000398888		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000434032		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000470281	ENST00000488993		ChiTaRS3.1			BQ335731	AAK1	chr2	69748041	+	USP19	chr3	49149870	-
intron-intron	ENST00000348715	ENST00000348715		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000348715	ENST00000397647		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000348715	ENST00000263335		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000348715	ENST00000429538		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000348715	ENST00000263334		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000397647	ENST00000348715		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000397647	ENST00000397647		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000397647	ENST00000263335		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000397647	ENST00000429538		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000397647	ENST00000263334		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263335	ENST00000348715		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263335	ENST00000397647		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263335	ENST00000263335		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263335	ENST00000429538		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263335	ENST00000263334		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000429538	ENST00000348715		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000429538	ENST00000397647		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000429538	ENST00000263335		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000429538	ENST00000429538		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000429538	ENST00000263334		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263334	ENST00000348715		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263334	ENST00000397647		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263334	ENST00000263335		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263334	ENST00000429538		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000263334	ENST00000263334		ChiTaRS3.1			BF086841	PAX8	chr2	113999891	-	PAX8	chr2	113997806	+
intron-intron	ENST00000586458	ENST00000384994		ChiTaRS3.1			BE813571	ZNF529	chr19	37075248	+	NEAT1	chr11	65210353	+
intron-intron	ENST00000334116	ENST00000384994		ChiTaRS3.1			BE813571	ZNF529	chr19	37075248	+	NEAT1	chr11	65210353	+
intron-intron	ENST00000591340	ENST00000384994		ChiTaRS3.1			BE813571	ZNF529	chr19	37075248	+	NEAT1	chr11	65210353	+
intron-intron	ENST00000377103	ENST00000564996		ChiTaRS3.1			BF829221	THBD	chr20	23026933	+	KLHL36	chr16	84698383	+
intron-intron	ENST00000377103	ENST00000258157		ChiTaRS3.1			BF829221	THBD	chr20	23026933	+	KLHL36	chr16	84698383	+
intron-intron	ENST00000371839	ENST00000431759		ChiTaRS3.1			R53641	AGBL4	chr1	49935677	-	SLC2A1-AS1	chr1	43430485	-
intron-intron	ENST00000371838	ENST00000431759		ChiTaRS3.1			R53641	AGBL4	chr1	49935677	-	SLC2A1-AS1	chr1	43430485	-
intron-intron	ENST00000371836	ENST00000431759		ChiTaRS3.1			R53641	AGBL4	chr1	49935677	-	SLC2A1-AS1	chr1	43430485	-
intron-intron	ENST00000334103	ENST00000431759		ChiTaRS3.1			R53641	AGBL4	chr1	49935677	-	SLC2A1-AS1	chr1	43430485	-
intron-intron	ENST00000497451	ENST00000431759		ChiTaRS3.1			R53641	AGBL4	chr1	49935677	-	SLC2A1-AS1	chr1	43430485	-
3UTR-intron	ENST00000229795	ENST00000295065		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229795	ENST00000379383		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229795	ENST00000404530		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229795	ENST00000490459		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229795	ENST00000426310		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229795	ENST00000407893		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229794	ENST00000295065		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229794	ENST00000379383		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229794	ENST00000404530		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229794	ENST00000490459		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229794	ENST00000426310		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
3UTR-intron	ENST00000229794	ENST00000407893		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000468133	ENST00000295065		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000468133	ENST00000379383		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000468133	ENST00000404530		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000468133	ENST00000490459		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000468133	ENST00000426310		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000468133	ENST00000407893		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000310795	ENST00000295065		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000310795	ENST00000379383		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000310795	ENST00000404530		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000310795	ENST00000490459		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000310795	ENST00000426310		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
intron-intron	ENST00000310795	ENST00000407893		ChiTaRS3.1			CA429031	MAPK14	chr6	36078112	-	MEMO1	chr2	32264853	-
5CDS-intron	ENST00000433935	ENST00000433935		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000433935	ENST00000592813		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000433935	ENST00000269289		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000433935	ENST00000573751		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000592813	ENST00000433935		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000592813	ENST00000592813		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000592813	ENST00000269289		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000592813	ENST00000573751		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000269289	ENST00000433935		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000269289	ENST00000592813		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000269289	ENST00000269289		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000269289	ENST00000573751		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000573751	ENST00000433935		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000573751	ENST00000592813		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000573751	ENST00000269289		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
5CDS-intron	ENST00000573751	ENST00000573751		ChiTaRS3.1			AL041801	ZMYND15	chr17	4649190	-	ZMYND15	chr17	4643560	+
3UTR-intron	ENST00000295797	ENST00000372201		ChiTaRS3.1			BE930931	PRKCI	chr3	170021535	+	PLK3	chr1	45270539	-
3UTR-intron	ENST00000295797	ENST00000465443		ChiTaRS3.1			BE930931	PRKCI	chr3	170021535	+	PLK3	chr1	45270539	-
intron-intron	ENST00000460734	ENST00000460734		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000460734	ENST00000539173		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000460734	ENST00000437626		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000460734	ENST00000389863		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000460734	ENST00000348831		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000460734	ENST00000360697		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000539173	ENST00000460734		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000539173	ENST00000539173		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000539173	ENST00000437626		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000539173	ENST00000389863		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000539173	ENST00000348831		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000539173	ENST00000360697		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000437626	ENST00000460734		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000437626	ENST00000539173		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000437626	ENST00000437626		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000437626	ENST00000389863		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000437626	ENST00000348831		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000437626	ENST00000360697		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000389863	ENST00000460734		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000389863	ENST00000539173		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000389863	ENST00000437626		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000389863	ENST00000389863		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000389863	ENST00000348831		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000389863	ENST00000360697		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000348831	ENST00000460734		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000348831	ENST00000539173		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000348831	ENST00000437626		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000348831	ENST00000389863		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000348831	ENST00000348831		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000348831	ENST00000360697		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000360697	ENST00000460734		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000360697	ENST00000539173		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000360697	ENST00000437626		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000360697	ENST00000389863		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000360697	ENST00000348831		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000360697	ENST00000360697		ChiTaRS3.1			CV351341	ADARB1	chr21	46517539	-	ADARB1	chr21	46517476	+
intron-intron	ENST00000398141	ENST00000390548		ChiTaRS3.1			AW577411	HPS4	chr22	26854443	+	IGHG1	chr2	90302216	-
intron-intron	ENST00000398145	ENST00000390548		ChiTaRS3.1			AW577411	HPS4	chr22	26854443	+	IGHG1	chr2	90302216	-
intron-intron	ENST00000402105	ENST00000390548		ChiTaRS3.1			AW577411	HPS4	chr22	26854443	+	IGHG1	chr2	90302216	-
intron-intron	ENST00000336873	ENST00000390548		ChiTaRS3.1			AW577411	HPS4	chr22	26854443	+	IGHG1	chr2	90302216	-
intron-intron	ENST00000493455	ENST00000390548		ChiTaRS3.1			AW577411	HPS4	chr22	26854443	+	IGHG1	chr2	90302216	-
intron-intron	ENST00000367255	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367255	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367255	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367255	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000356820	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000356820	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000356820	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000356820	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000423061	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000423061	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000423061	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000423061	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000448038	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000448038	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000448038	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000448038	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000341594	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000341594	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000341594	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000341594	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000265368	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000265368	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000265368	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000265368	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367253	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367253	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367253	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367253	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367248	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367248	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367248	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000367248	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000413186	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000413186	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000413186	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000413186	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000466159	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000466159	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000466159	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000466159	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000539504	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000539504	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000539504	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000539504	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000347037	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000347037	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000347037	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000347037	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000354674	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000354674	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000354674	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000354674	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000495090	ENST00000407170		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000495090	ENST00000482870		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000495090	ENST00000187608		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-intron	ENST00000495090	ENST00000401445		ChiTaRS3.1			BF902791	SYNE1	chr6	152702184	-	CEACAM21	chr19	42079403	+
intron-3CDS	ENST00000469100	ENST00000373456		ChiTaRS3.1			BI828591	YARS	chr1	33272081	-	RNF19B	chr1	33404132	-
intron-3CDS	ENST00000469100	ENST00000356990		ChiTaRS3.1			BI828591	YARS	chr1	33272081	-	RNF19B	chr1	33404132	-
intron-3CDS	ENST00000469100	ENST00000235150		ChiTaRS3.1			BI828591	YARS	chr1	33272081	-	RNF19B	chr1	33404132	-
Frame-shit	ENST00000373477	ENST00000373456		ChiTaRS3.1			BI828591	YARS	chr1	33272081	-	RNF19B	chr1	33404132	-
Frame-shit	ENST00000373477	ENST00000356990		ChiTaRS3.1			BI828591	YARS	chr1	33272081	-	RNF19B	chr1	33404132	-
Frame-shit	ENST00000373477	ENST00000235150		ChiTaRS3.1			BI828591	YARS	chr1	33272081	-	RNF19B	chr1	33404132	-
intron-3UTR	ENST00000399322	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000258767	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000403951	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000402815	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000407950	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000444700	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000406247	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-3UTR	ENST00000403963	ENST00000534336		ChiTaRS3.1			EY123371	DGKB	chr7	14806596	-	MALAT1	chr11	65266734	-
intron-intron	ENST00000239926	ENST00000239926		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000239926	ENST00000421631		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000239926	ENST00000509812		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000239926	ENST00000515645		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000421631	ENST00000239926		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000421631	ENST00000421631		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000421631	ENST00000509812		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000421631	ENST00000515645		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000509812	ENST00000239926		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000509812	ENST00000421631		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000509812	ENST00000509812		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000509812	ENST00000515645		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000515645	ENST00000239926		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000515645	ENST00000421631		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000515645	ENST00000509812		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000515645	ENST00000515645		ChiTaRS3.1			BU680361	MYOT	chr5	137087548	+	MYOT	chr5	137087919	-
intron-intron	ENST00000286175	ENST00000543106		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000286175	ENST00000389385		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000286175	ENST00000447659		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000286175	ENST00000551052		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000286175	ENST00000415485		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000286175	ENST00000548866		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000286175	ENST00000420983		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000286175	ENST00000549913		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000392283	ENST00000543106		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000392283	ENST00000389385		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000392283	ENST00000447659		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000392283	ENST00000551052		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000392283	ENST00000415485		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000392283	ENST00000548866		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000392283	ENST00000420983		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000392283	ENST00000549913		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000465823	ENST00000543106		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000465823	ENST00000389385		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000465823	ENST00000447659		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000465823	ENST00000551052		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000465823	ENST00000415485		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000465823	ENST00000548866		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000465823	ENST00000420983		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000465823	ENST00000549913		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409361	ENST00000543106		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000409361	ENST00000389385		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000409361	ENST00000447659		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409361	ENST00000551052		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409361	ENST00000415485		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409361	ENST00000548866		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409361	ENST00000420983		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409361	ENST00000549913		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409449	ENST00000543106		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000409449	ENST00000389385		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-5UTR	ENST00000409449	ENST00000447659		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409449	ENST00000551052		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409449	ENST00000415485		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409449	ENST00000548866		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409449	ENST00000420983		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
intron-intron	ENST00000409449	ENST00000549913		ChiTaRS3.1			DA112381	PPIL3	chr2	201753766	-	RPH3A	chr12	113229729	+
Frame-shit	ENST00000352456	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000352456	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000352456	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000595018	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000595018	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000595018	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000392006	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000392006	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000392006	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000378215	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000378215	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000378215	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000602130	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000602130	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000602130	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000593587	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000593587	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000593587	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000263367	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000263367	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
Frame-shit	ENST00000263367	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
intron-3CDS	ENST00000594207	ENST00000317269		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
intron-3CDS	ENST00000594207	ENST00000357606		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
intron-3CDS	ENST00000594207	ENST00000317287		ChiTaRS3.1			BF916621	HNRNPUL1	chr19	41810010	-	DNAJC14	chr12	56221686	-
3UTR-3UTR	ENST00000415149	ENST00000415149		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
3UTR-intron	ENST00000415149	ENST00000402543		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
3UTR-intron	ENST00000415149	ENST00000325805		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
3UTR-intron	ENST00000415149	ENST00000416476		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
3UTR-intron	ENST00000415149	ENST00000406780		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
3UTR-intron	ENST00000415149	ENST00000473542		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-3UTR	ENST00000402543	ENST00000415149		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000402543	ENST00000402543		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000402543	ENST00000325805		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000402543	ENST00000416476		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000402543	ENST00000406780		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000402543	ENST00000473542		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-3UTR	ENST00000325805	ENST00000415149		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000325805	ENST00000402543		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000325805	ENST00000325805		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000325805	ENST00000416476		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000325805	ENST00000406780		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000325805	ENST00000473542		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-3UTR	ENST00000416476	ENST00000415149		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000416476	ENST00000402543		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000416476	ENST00000325805		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000416476	ENST00000416476		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000416476	ENST00000406780		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000416476	ENST00000473542		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-3UTR	ENST00000406780	ENST00000415149		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000406780	ENST00000402543		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000406780	ENST00000325805		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000406780	ENST00000416476		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000406780	ENST00000406780		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000406780	ENST00000473542		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-3UTR	ENST00000473542	ENST00000415149		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000473542	ENST00000402543		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000473542	ENST00000325805		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000473542	ENST00000416476		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000473542	ENST00000406780		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
intron-intron	ENST00000473542	ENST00000473542		ChiTaRS3.1			CB242981	BBX	chr3	107528690	-	BBX	chr3	107528240	+
Frame-shit	ENST00000395135	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000395135	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000395135	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000395132	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3UTR	ENST00000395132	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268059	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000268059	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000354026	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000354026	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000268058	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000268058	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000565898	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000565898	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569477	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000569477	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000569965	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000569965	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000567543	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3UTR	ENST00000567543	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000435786	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000435786	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000436891	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000436891	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000564428	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000564428	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000359928	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3UTR	ENST00000359928	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
Frame-shit	ENST00000563500	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
5CDS-3UTR	ENST00000563500	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000395135		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000395132		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000268059		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000354026		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000268058		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000565898		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000569477		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000569965		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000567543		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000435786		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000436891		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000564428		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000359928		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3CDS	ENST00000569161	ENST00000563500		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-3UTR	ENST00000569161	ENST00000569161		ChiTaRS3.1			AW606071	PML	chr15	74325640	+	PML	chr15	74315605	-
intron-intron	ENST00000346798	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000346798	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000346798	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000354192	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000354192	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000354192	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000348990	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000348990	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000348990	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000357903	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000357903	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000357903	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000358918	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000358918	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000358918	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000359726	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000359726	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000359726	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000448388	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000448388	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000448388	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000440126	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000440126	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000440126	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000439274	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000439274	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000439274	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000474136	ENST00000284770		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000474136	ENST00000284771		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000474136	ENST00000284767		ChiTaRS3.1			Z17821	APP	chr21	27541655	+	PDLIM3	chr4	186436303	+
intron-intron	ENST00000394681	ENST00000394681		ChiTaRS3.1			BI868521	SCUBE3	chr6	35192094	+	SCUBE3	chr6	35192020	-
intron-intron	ENST00000394681	ENST00000274938		ChiTaRS3.1			BI868521	SCUBE3	chr6	35192094	+	SCUBE3	chr6	35192020	-
intron-intron	ENST00000274938	ENST00000394681		ChiTaRS3.1			BI868521	SCUBE3	chr6	35192094	+	SCUBE3	chr6	35192020	-
intron-intron	ENST00000274938	ENST00000274938		ChiTaRS3.1			BI868521	SCUBE3	chr6	35192094	+	SCUBE3	chr6	35192020	-
intron-intron	ENST00000272238	ENST00000278616		ChiTaRS3.1			BF329241	ATP6V1C2	chr2	10924263	+	ATM	chr11	108172361	-
intron-intron	ENST00000272238	ENST00000452508		ChiTaRS3.1			BF329241	ATP6V1C2	chr2	10924263	+	ATM	chr11	108172361	-
intron-intron	ENST00000272238	ENST00000525178		ChiTaRS3.1			BF329241	ATP6V1C2	chr2	10924263	+	ATM	chr11	108172361	-
3UTR-intron	ENST00000381661	ENST00000278616		ChiTaRS3.1			BF329241	ATP6V1C2	chr2	10924263	+	ATM	chr11	108172361	-
3UTR-intron	ENST00000381661	ENST00000452508		ChiTaRS3.1			BF329241	ATP6V1C2	chr2	10924263	+	ATM	chr11	108172361	-
3UTR-intron	ENST00000381661	ENST00000525178		ChiTaRS3.1			BF329241	ATP6V1C2	chr2	10924263	+	ATM	chr11	108172361	-
intron-intron	ENST00000512163	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000512163	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000512163	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000512163	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000512163	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000512163	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000512163	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000393929	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-3UTR	ENST00000393929	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-3UTR	ENST00000393929	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000393929	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000393929	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000393929	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000393929	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000340828	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-3UTR	ENST00000340828	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-3UTR	ENST00000340828	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000340828	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000340828	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000340828	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
3UTR-intron	ENST00000340828	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000511683	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000511683	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000511683	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000511683	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000511683	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000511683	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000511683	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000510664	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000510664	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000510664	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000510664	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000510664	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000510664	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000510664	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000504553	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000504553	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000504553	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000504553	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000504553	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000504553	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000504553	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000509425	ENST00000512163		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000509425	ENST00000393929		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-3UTR	ENST00000509425	ENST00000340828		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000509425	ENST00000511683		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000509425	ENST00000510664		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000509425	ENST00000504553		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000509425	ENST00000509425		ChiTaRS3.1			AA856921	CCNG1	chr5	162871197	+	CCNG1	chr5	162871245	-
intron-intron	ENST00000369083	ENST00000369083		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369083	ENST00000361976		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369083	ENST00000369081		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-5UTR	ENST00000369083	ENST00000369080		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369083	ENST00000490818		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
3UTR-intron	ENST00000361976	ENST00000369083		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
3UTR-intron	ENST00000361976	ENST00000361976		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
3UTR-intron	ENST00000361976	ENST00000369081		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
3UTR-5UTR	ENST00000361976	ENST00000369080		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
3UTR-intron	ENST00000361976	ENST00000490818		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369081	ENST00000369083		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369081	ENST00000361976		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369081	ENST00000369081		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-5UTR	ENST00000369081	ENST00000369080		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369081	ENST00000490818		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369080	ENST00000369083		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369080	ENST00000361976		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369080	ENST00000369081		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-5UTR	ENST00000369080	ENST00000369080		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000369080	ENST00000490818		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000490818	ENST00000369083		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000490818	ENST00000361976		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000490818	ENST00000369081		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-5UTR	ENST00000490818	ENST00000369080		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000490818	ENST00000490818		ChiTaRS3.1			BP229571	INPP5F	chr10	121587897	+	INPP5F	chr10	121578849	+
intron-intron	ENST00000455140	ENST00000329957		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000455140	ENST00000526462		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000248070	ENST00000329957		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000248070	ENST00000526462		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000535753	ENST00000329957		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000535753	ENST00000526462		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000594975	ENST00000329957		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000594975	ENST00000526462		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000602009	ENST00000329957		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000602009	ENST00000526462		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000597937	ENST00000329957		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000597937	ENST00000526462		ChiTaRS3.1			BI042611	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000396402	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000396402	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000396402	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000260433	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000260433	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000260433	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000396404	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000396404	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000396404	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000559878	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000559878	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000559878	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000405913	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000405913	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000405913	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000557858	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000557858	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000557858	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000492852	ENST00000430627		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000492852	ENST00000447079		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-intron	ENST00000492852	ENST00000559545		ChiTaRS3.1			BF990611	CYP19A1	chr15	51628902	-	CDK12	chr17	37670868	-
intron-3UTR	ENST00000268097	ENST00000268097		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000268097	ENST00000566304		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000268097	ENST00000457859		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000268097	ENST00000567159		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000268097	ENST00000429918		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000268097	ENST00000567213		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-3UTR	ENST00000566304	ENST00000268097		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000566304	ENST00000566304		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000566304	ENST00000457859		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000566304	ENST00000567159		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000566304	ENST00000429918		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000566304	ENST00000567213		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-3UTR	ENST00000457859	ENST00000268097		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000457859	ENST00000566304		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000457859	ENST00000457859		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000457859	ENST00000567159		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000457859	ENST00000429918		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000457859	ENST00000567213		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-3UTR	ENST00000567159	ENST00000268097		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567159	ENST00000566304		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567159	ENST00000457859		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567159	ENST00000567159		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567159	ENST00000429918		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567159	ENST00000567213		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-3UTR	ENST00000429918	ENST00000268097		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000429918	ENST00000566304		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000429918	ENST00000457859		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000429918	ENST00000567159		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000429918	ENST00000429918		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000429918	ENST00000567213		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-3UTR	ENST00000567213	ENST00000268097		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567213	ENST00000566304		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567213	ENST00000457859		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567213	ENST00000567159		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567213	ENST00000429918		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
intron-intron	ENST00000567213	ENST00000567213		ChiTaRS3.1			BU677061	HEXA	chr15	72635997	+	HEXA	chr15	72636259	-
In-frame	ENST00000370951	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370951	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370951	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000370951	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000370951	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000370951	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000370951	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000405432	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000405432	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000405432	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000405432	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000405432	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000405432	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000405432	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370950	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370950	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370950	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000370950	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000370950	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000370950	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000370950	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000454435	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000454435	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000454435	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-intron	ENST00000454435	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-intron	ENST00000454435	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3UTR	ENST00000454435	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3UTR	ENST00000454435	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000436161	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000436161	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000436161	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-intron	ENST00000436161	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-intron	ENST00000436161	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3UTR	ENST00000436161	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3UTR	ENST00000436161	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-3CDS	ENST00000484162	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-3CDS	ENST00000484162	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-3CDS	ENST00000484162	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-intron	ENST00000484162	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-intron	ENST00000484162	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-3UTR	ENST00000484162	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
3UTR-3UTR	ENST00000484162	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370949	ENST00000370951		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370949	ENST00000405432		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
In-frame	ENST00000370949	ENST00000370950		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000370949	ENST00000454435		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-intron	ENST00000370949	ENST00000436161		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000370949	ENST00000484162		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
5CDS-3UTR	ENST00000370949	ENST00000370949		ChiTaRS3.1			BU678621	SRSF11	chr1	70715672	-	SRSF11	chr1	70716046	+
intron-3CDS	ENST00000335007	ENST00000366955		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000335007	ENST00000467765		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-3CDS	ENST00000340766	ENST00000366955		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000340766	ENST00000467765		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-3CDS	ENST00000546933	ENST00000366955		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000546933	ENST00000467765		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-3CDS	ENST00000550991	ENST00000366955		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000550991	ENST00000467765		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-3CDS	ENST00000551676	ENST00000366955		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000551676	ENST00000467765		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-3CDS	ENST00000551690	ENST00000366955		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000551690	ENST00000467765		ChiTaRS3.1			AI064871	PPP1CC	chr12	111158145	+	CENPF	chr1	214794182	+
intron-intron	ENST00000409592	ENST00000490746		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000409592	ENST00000393913		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000409592	ENST00000233712		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000409592	ENST00000410113		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000409592	ENST00000410071		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000409592	ENST00000410010		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000258390	ENST00000490746		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000258390	ENST00000393913		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000258390	ENST00000233712		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000258390	ENST00000410113		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000258390	ENST00000410071		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000258390	ENST00000410010		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000474102	ENST00000490746		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000474102	ENST00000393913		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000474102	ENST00000233712		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000474102	ENST00000410113		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000474102	ENST00000410071		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000474102	ENST00000410010		ChiTaRS3.1			AI989611	DOCK10	chr2	225719792	-	EVA1A	chr2	75790608	+
intron-intron	ENST00000532324	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000293618		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000429001		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000398473		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000518444		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000347328		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000522085		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000518561		ChiTaRS3.1			AI733351	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-3CDS	ENST00000331925	ENST00000341911		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000316528		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000442647		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000367814		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000525369		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000534121		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000533624		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000534044		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000331925	ENST00000528774		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000531845		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000527615		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000331925	ENST00000420123		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000341911		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000316528		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000442647		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000367814		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000525369		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000534121		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000533624		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000534044		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000573283	ENST00000528774		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000531845		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000527615		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000573283	ENST00000420123		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000341911		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000316528		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000442647		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000367814		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000525369		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000534121		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000533624		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000534044		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575842	ENST00000528774		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000531845		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000527615		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575842	ENST00000420123		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000341911		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000316528		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000442647		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000367814		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000525369		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000534121		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000533624		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000534044		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3CDS	ENST00000575087	ENST00000528774		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000531845		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000527615		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
intron-3UTR	ENST00000575087	ENST00000420123		ChiTaRS3.1			BE092001	ACTG1	chr17	79478937	-	MYB	chr6	135513542	-
3UTR-intron	ENST00000540326	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000540326	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000540326	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000540326	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373603	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373603	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373603	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373603	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373600	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373600	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373600	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000373600	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000320246	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000320246	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000320246	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000320246	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000545174	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000545174	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000545174	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000545174	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000394199	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000394199	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000394199	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000394199	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000546191	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000546191	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000546191	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000546191	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000539416	ENST00000344824		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000539416	ENST00000538887		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000539416	ENST00000300933		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
3UTR-intron	ENST00000539416	ENST00000591645		ChiTaRS3.1			BF878471	NEK6	chr9	127113312	-	TPM4	chr19	16199345	-
intron-5UTR	ENST00000582783	ENST00000561976		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-intron	ENST00000582783	ENST00000389386		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-intron	ENST00000582783	ENST00000565452		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-5UTR	ENST00000392035	ENST00000561976		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-intron	ENST00000392035	ENST00000389386		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-intron	ENST00000392035	ENST00000565452		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-5UTR	ENST00000584868	ENST00000561976		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-intron	ENST00000584868	ENST00000389386		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
intron-intron	ENST00000584868	ENST00000565452		ChiTaRS3.1			BF761391	C19orf47	chr19	40853199	+	VPS9D1	chr16	89785753	+
3UTR-intron	ENST00000253814	ENST00000375300		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
3UTR-intron	ENST00000253814	ENST00000292055		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
3UTR-intron	ENST00000253814	ENST00000375288		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
3UTR-intron	ENST00000253814	ENST00000434315		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
3UTR-intron	ENST00000253814	ENST00000542607		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
3UTR-intron	ENST00000253814	ENST00000446921		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
3UTR-intron	ENST00000253814	ENST00000488337		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000375300		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000292055		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000375288		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000434315		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000542607		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000446921		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-intron	ENST00000509436	ENST00000488337		ChiTaRS3.1			AI743411	NDFIP1	chr5	141532059	-	SIK3	chr11	116967467	+
intron-3CDS	ENST00000323786	ENST00000323786		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000323786	ENST00000393612		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000323786	ENST00000564653		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-3CDS	ENST00000393612	ENST00000323786		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000393612	ENST00000393612		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000393612	ENST00000564653		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-3CDS	ENST00000564653	ENST00000323786		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000564653	ENST00000393612		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000564653	ENST00000564653		ChiTaRS3.1			BG983301	COG4	chr16	70543265	+	COG4	chr16	70517847	+
3UTR-3UTR	ENST00000370251	ENST00000370251		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000370251	ENST00000421401		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000370251	ENST00000440091		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-intron	ENST00000370251	ENST00000370249		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-intron	ENST00000370251	ENST00000438239		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000421401	ENST00000370251		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000421401	ENST00000421401		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000421401	ENST00000440091		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-intron	ENST00000421401	ENST00000370249		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-intron	ENST00000421401	ENST00000438239		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000440091	ENST00000370251		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000440091	ENST00000421401		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-3UTR	ENST00000440091	ENST00000440091		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-intron	ENST00000440091	ENST00000370249		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
3UTR-intron	ENST00000440091	ENST00000438239		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-3UTR	ENST00000370249	ENST00000370251		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-3UTR	ENST00000370249	ENST00000421401		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-3UTR	ENST00000370249	ENST00000440091		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-intron	ENST00000370249	ENST00000370249		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-intron	ENST00000370249	ENST00000438239		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-3UTR	ENST00000438239	ENST00000370251		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-3UTR	ENST00000438239	ENST00000421401		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-3UTR	ENST00000438239	ENST00000440091		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-intron	ENST00000438239	ENST00000370249		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
intron-intron	ENST00000438239	ENST00000438239		ChiTaRS3.1			AA132881	ZNF275	chrX	152617332	-	ZNF275	chrX	152617460	+
5CDS-intron	ENST00000264933	ENST00000360187		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
5CDS-intron	ENST00000264933	ENST00000392321		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
5CDS-intron	ENST00000264933	ENST00000331711		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
3UTR-intron	ENST00000505221	ENST00000360187		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
3UTR-intron	ENST00000505221	ENST00000392321		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
3UTR-intron	ENST00000505221	ENST00000331711		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
intron-intron	ENST00000509581	ENST00000360187		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
intron-intron	ENST00000509581	ENST00000392321		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
intron-intron	ENST00000509581	ENST00000331711		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
5CDS-intron	ENST00000507528	ENST00000360187		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
5CDS-intron	ENST00000507528	ENST00000392321		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
5CDS-intron	ENST00000507528	ENST00000331711		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
3UTR-intron	ENST00000511482	ENST00000360187		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
3UTR-intron	ENST00000511482	ENST00000392321		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
3UTR-intron	ENST00000511482	ENST00000331711		ChiTaRS3.1			CF528651	PDCD6	chr5	314573	-	ZNF605	chr12	133511642	+
intron-intron	ENST00000288670	ENST00000438423		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000267811		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000452095		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000333725		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000557843		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000560764		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000543579		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000537840		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000343827		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000559710		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000288670	ENST00000559703		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000438423		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000267811		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000452095		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000333725		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000557843		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000560764		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000543579		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000537840		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000343827		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000559710		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000475377	ENST00000559703		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000438423		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000267811		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000452095		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000333725		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000557843		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000560764		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000543579		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000537840		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000343827		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000559710		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000497192	ENST00000559703		ChiTaRS3.1			AW837551	FMNL2	chr2	153464005	-	TCF12	chr15	57567146	-
intron-intron	ENST00000592694	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592694	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000337679	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000392124	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000339413	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000592246	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000329420	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591784	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000591755	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000592694		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000337679		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000392124		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000339413		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000592246		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000329420		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000591784		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000591755		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
intron-intron	ENST00000587361	ENST00000587361		ChiTaRS3.1			AA557951	YIF1B	chr19	38796067	-	YIF1B	chr19	38797611	+
5CDS-intron	ENST00000355431	ENST00000267485		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000355431	ENST00000334342		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000348476	ENST00000267485		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000348476	ENST00000334342		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000395168	ENST00000267485		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000395168	ENST00000334342		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000431317	ENST00000267485		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
5CDS-intron	ENST00000431317	ENST00000334342		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
intron-intron	ENST00000553355	ENST00000267485		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
intron-intron	ENST00000553355	ENST00000334342		ChiTaRS3.1			BC047301	ARID4A	chr14	58772831	+	C14orf37	chr14	58730422	+
intron-intron	ENST00000258770	ENST00000298310		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000258770	ENST00000382135		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000258770	ENST00000545773		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000258770	ENST00000556925		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000258770	ENST00000546046		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000258770	ENST00000556672		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000361278	ENST00000298310		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000361278	ENST00000382135		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000361278	ENST00000545773		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000361278	ENST00000556925		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000361278	ENST00000546046		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000361278	ENST00000556672		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000395655	ENST00000298310		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000395655	ENST00000382135		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000395655	ENST00000545773		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000395655	ENST00000556925		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000395655	ENST00000546046		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000395655	ENST00000556672		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000494076	ENST00000298310		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000494076	ENST00000382135		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000494076	ENST00000545773		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000494076	ENST00000556925		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000494076	ENST00000546046		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000494076	ENST00000556672		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000471142	ENST00000298310		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000471142	ENST00000382135		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000471142	ENST00000545773		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000471142	ENST00000556925		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000471142	ENST00000546046		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-intron	ENST00000471142	ENST00000556672		ChiTaRS3.1			BU532331	TBRG4	chr7	45148641	-	NEMF	chr14	50050356	-
intron-3CDS	ENST00000307751	ENST00000368395		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000338684		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000438413		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000457295		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000462215		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368392		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368393		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368390		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368396		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000343256		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368398		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368389		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000342482		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000337604		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-3CDS	ENST00000597803	ENST00000368395		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000338684		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000438413		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000457295		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000462215		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368392		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368393		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368390		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368396		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000343256		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368398		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368389		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000342482		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000337604		ChiTaRS3.1			AW391731	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000429124	ENST00000445552		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000337845		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000329240		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000573185		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000570550		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000336125		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000549904		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000550273		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000549665		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000429124	ENST00000553155		ChiTaRS3.1			AW578921	FTX	chrX	73351005	+	ARL17A	chr17	641085	-
intron-intron	ENST00000376874	ENST00000535742		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000376874	ENST00000546025		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000376874	ENST00000345254		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000376874	ENST00000540668		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000376874	ENST00000339365		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000376874	ENST00000411652		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000376874	ENST00000496827		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000535742		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000546025		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000345254		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000540668		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000339365		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000411652		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000340724	ENST00000496827		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000535742		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000546025		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000345254		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000540668		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000339365		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000411652		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-intron	ENST00000544468	ENST00000496827		ChiTaRS3.1			BE829581	RILPL1	chr12	124013569	+	SEC24C	chr10	75519814	+
intron-5UTR	ENST00000351747	ENST00000508803		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000382892		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000382891		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000382895		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000351747	ENST00000482415		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000351747	ENST00000382888		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000514045		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000436793		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000420906		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000503128		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000351747	ENST00000398261		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000508803		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000382892		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000382891		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000382895		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000462713	ENST00000482415		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000462713	ENST00000382888		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000514045		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000436793		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000420906		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000503128		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000462713	ENST00000398261		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000508803		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000382892		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000382891		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000382895		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000344804	ENST00000482415		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000344804	ENST00000382888		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000514045		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000436793		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000420906		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000503128		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000344804	ENST00000398261		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000508803		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000382892		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000382891		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000382895		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000389536	ENST00000482415		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000389536	ENST00000382888		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000514045		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000436793		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000420906		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000503128		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000389536	ENST00000398261		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000508803		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000382892		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000382891		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000382895		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000311202	ENST00000482415		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-intron	ENST00000311202	ENST00000382888		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000514045		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000436793		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000420906		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000503128		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-5UTR	ENST00000311202	ENST00000398261		ChiTaRS3.1			DN999429	DNAH12	chr3	57409936	-	WHSC1	chr4	1902351	+
intron-3CDS	ENST00000295666	ENST00000295666		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-3CDS	ENST00000295666	ENST00000537922		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-intron	ENST00000295666	ENST00000512512		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-3CDS	ENST00000537922	ENST00000295666		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-3CDS	ENST00000537922	ENST00000537922		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-intron	ENST00000537922	ENST00000512512		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-3CDS	ENST00000512512	ENST00000295666		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-3CDS	ENST00000512512	ENST00000537922		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-intron	ENST00000512512	ENST00000512512		ChiTaRS3.1			CF126241	IGFBP7	chr4	57976548	+	IGFBP7	chr4	57976324	-
intron-intron	ENST00000371440	ENST00000371440		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000371440	ENST00000371435		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000371440	ENST00000395961		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000371440	ENST00000434986		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000371440	ENST00000411563		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000371435	ENST00000371440		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000371435	ENST00000371435		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000371435	ENST00000395961		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000371435	ENST00000434986		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000371435	ENST00000411563		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000395961	ENST00000371440		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000395961	ENST00000371435		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000395961	ENST00000395961		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000395961	ENST00000434986		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000395961	ENST00000411563		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000434986	ENST00000371440		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000434986	ENST00000371435		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000434986	ENST00000395961		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000434986	ENST00000434986		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000434986	ENST00000411563		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000411563	ENST00000371440		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000411563	ENST00000371435		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-3UTR	ENST00000411563	ENST00000395961		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000411563	ENST00000434986		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000411563	ENST00000411563		ChiTaRS3.1			H88501	BCAS1	chr20	52560216	+	BCAS1	chr20	52560195	-
intron-intron	ENST00000316763	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000316763	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000377011	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000599538	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000443401	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601341	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594948	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000601912	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000594092	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000593919	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000527084		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000527541		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000366491		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000366489		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000463359		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000366488		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000536561		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000366490		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000424804	ENST00000531662		ChiTaRS3.1			AA634561	VRK3	chr19	50479776	+	GCSAML	chr1	247693793	-
intron-intron	ENST00000257663	ENST00000544305		ChiTaRS3.1			DB316331	TMEM60	chr7	77423478	+	EPHB2	chr1	23247347	-
intron-intron	ENST00000257663	ENST00000374630		ChiTaRS3.1			DB316331	TMEM60	chr7	77423478	+	EPHB2	chr1	23247347	-
intron-intron	ENST00000257663	ENST00000400191		ChiTaRS3.1			DB316331	TMEM60	chr7	77423478	+	EPHB2	chr1	23247347	-
intron-intron	ENST00000257663	ENST00000374632		ChiTaRS3.1			DB316331	TMEM60	chr7	77423478	+	EPHB2	chr1	23247347	-
intron-intron	ENST00000257663	ENST00000374627		ChiTaRS3.1			DB316331	TMEM60	chr7	77423478	+	EPHB2	chr1	23247347	-
intron-intron	ENST00000257663	ENST00000465676		ChiTaRS3.1			DB316331	TMEM60	chr7	77423478	+	EPHB2	chr1	23247347	-
In-frame	ENST00000256858	ENST00000256858		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
In-frame	ENST00000256858	ENST00000398130		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
5CDS-intron	ENST00000256858	ENST00000592479		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
In-frame	ENST00000398130	ENST00000256858		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
In-frame	ENST00000398130	ENST00000398130		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
5CDS-intron	ENST00000398130	ENST00000592479		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
intron-3CDS	ENST00000592479	ENST00000256858		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
intron-3CDS	ENST00000592479	ENST00000398130		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
intron-intron	ENST00000592479	ENST00000592479		ChiTaRS3.1			AB040901	KIAA1468	chr18	59888478	-	KIAA1468	chr18	59888666	+
intron-intron	ENST00000534358	ENST00000503238		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000358350		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000537810		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000264319		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000507711		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000514783		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000507873		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000534358	ENST00000506685		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000503238		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000358350		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000537810		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000264319		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000507711		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000514783		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000507873		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000389506	ENST00000506685		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000503238		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000358350		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000537810		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000264319		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000507711		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000514783		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000507873		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000354520	ENST00000506685		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000503238		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000358350		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000537810		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000264319		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000507711		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000514783		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000507873		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000420751	ENST00000506685		ChiTaRS3.1			DQ299935	KMT2A	chr11	118358019	+	FRYL	chr4	48531751	-
intron-intron	ENST00000431975	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000431975	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000541650	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000366358	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000368123	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000537868	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000263050	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000342266	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000431975		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000541650		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000366358		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000368123		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000537868		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000263050		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000342266		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-intron	ENST00000474850	ENST00000474850		ChiTaRS3.1			CV333231	AKAP7	chr6	131582062	+	AKAP7	chr6	131577931	+
intron-3CDS	ENST00000256689	ENST00000461988		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000256689	ENST00000419840		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000256689	ENST00000394893		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000256689	ENST00000475509		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000256689	ENST00000545601		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000256689	ENST00000450476		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000256689	ENST00000439269		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000551374	ENST00000461988		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000551374	ENST00000419840		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000551374	ENST00000394893		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000551374	ENST00000475509		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000551374	ENST00000545601		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000551374	ENST00000450476		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000551374	ENST00000439269		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000547252	ENST00000461988		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000547252	ENST00000419840		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000547252	ENST00000394893		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000547252	ENST00000475509		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000547252	ENST00000545601		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000547252	ENST00000450476		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-intron	ENST00000547252	ENST00000439269		ChiTaRS3.1			AU136321	SLC38A2	chr12	46765100	-	POR	chr7	75612866	+
intron-3CDS	ENST00000261798	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000377843	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000515435	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000504676	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000515768	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000606719	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000606299	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-3CDS	ENST00000515748	ENST00000307750		ChiTaRS3.1			DA461511	CSNK1A1	chr5	148930604	-	ZBTB5	chr9	37441277	-
intron-intron	ENST00000342572	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000342572	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000342572	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000342572	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000306645	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000306645	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000306645	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000306645	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000437807	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000437807	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000437807	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000437807	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000336995	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000336995	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000336995	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000336995	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000434650	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000434650	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000434650	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000434650	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000583617	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000583617	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000583617	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000583617	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000577436	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000577436	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000577436	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000577436	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000585064	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000585064	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000585064	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000585064	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000577732	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000577732	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000577732	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000577732	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000578919	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000578919	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000578919	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000578919	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000585080	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000585080	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000585080	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000585080	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000578913	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000578913	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000578913	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000578913	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000583359	ENST00000356206		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000583359	ENST00000521321		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-3UTR	ENST00000583359	ENST00000358689		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
intron-intron	ENST00000583359	ENST00000417069		ChiTaRS3.1			AA465661	C17orf62	chr17	80400578	+	ENTPD4	chr8	23289140	+
3UTR-intron	ENST00000299575	ENST00000341567		ChiTaRS3.1			BM835701	ATMIN	chr16	81080293	+	TMEM248	chr7	66416157	-
intron-intron	ENST00000539819	ENST00000341567		ChiTaRS3.1			BM835701	ATMIN	chr16	81080293	+	TMEM248	chr7	66416157	-
3UTR-intron	ENST00000564241	ENST00000341567		ChiTaRS3.1			BM835701	ATMIN	chr16	81080293	+	TMEM248	chr7	66416157	-
3UTR-intron	ENST00000566488	ENST00000341567		ChiTaRS3.1			BM835701	ATMIN	chr16	81080293	+	TMEM248	chr7	66416157	-
intron-3CDS	ENST00000358077	ENST00000347869		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000358077	ENST00000469838		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3UTR	ENST00000358077	ENST00000441812		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3CDS	ENST00000472284	ENST00000347869		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000472284	ENST00000469838		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3UTR	ENST00000472284	ENST00000441812		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3CDS	ENST00000469640	ENST00000347869		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000469640	ENST00000469838		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3UTR	ENST00000469640	ENST00000441812		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3CDS	ENST00000408954	ENST00000347869		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000408954	ENST00000469838		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3UTR	ENST00000408954	ENST00000441812		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3CDS	ENST00000491893	ENST00000347869		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000491893	ENST00000469838		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3UTR	ENST00000491893	ENST00000441812		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3CDS	ENST00000466188	ENST00000347869		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000466188	ENST00000469838		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-3UTR	ENST00000466188	ENST00000441812		ChiTaRS3.1			BI049651	DAPK1	chr9	90163342	+	RBM5	chr3	50145518	-
intron-intron	ENST00000405201	ENST00000298097		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000405201	ENST00000554190		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000404621	ENST00000298097		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000404621	ENST00000554190		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000404121	ENST00000298097		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000404121	ENST00000554190		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000356219	ENST00000298097		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000356219	ENST00000554190		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000397355	ENST00000298097		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000397355	ENST00000554190		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000429285	ENST00000298097		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
intron-intron	ENST00000429285	ENST00000554190		ChiTaRS3.1			AA580941	NCOR2	chr12	124868037	-	FBXO33	chr14	39896326	-
In-frame	ENST00000357395	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000357395	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000357395	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000357395	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000358025	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000358025	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000358025	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000358025	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000344113	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000344113	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000344113	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000344113	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000341472	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000341472	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000341472	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000341472	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000356081	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000356081	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000356081	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000356081	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000554584	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000554584	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000554584	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000554584	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000555002	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000555002	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000555002	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000555002	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000394768	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000394768	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
In-frame	ENST00000394768	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
5CDS-intron	ENST00000394768	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000556725	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000556725	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000556725	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000556725	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000553455	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000553455	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000553455	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000553455	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000555022	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000555022	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000555022	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000555022	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000554805	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000554805	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000554805	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000554805	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000458046	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000458046	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000458046	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000458046	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000441438	ENST00000357395		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000441438	ENST00000358025		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-3CDS	ENST00000441438	ENST00000344113		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000341472		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000356081		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000554584		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000555002		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000394768		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000556725		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000553455		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000555022		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000554805		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000458046		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000441438	ENST00000441438		ChiTaRS3.1			BF815061	SYNE2	chr14	64641779	-	SYNE2	chr14	64641832	+
intron-intron	ENST00000453134	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000453134	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000453134	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000583458	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000583458	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000583458	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000415831	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000415831	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000415831	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000582043	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000582043	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000582043	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000580155	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000580155	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000580155	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000584778	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000584778	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000584778	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000578887	ENST00000358105		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000578887	ENST00000508675		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000578887	ENST00000512931		ChiTaRS3.1			DA120291	RBFOX3	chr17	77303842	-	C4orf22	chr4	81550834	-
intron-intron	ENST00000396056	ENST00000396056		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000396056	ENST00000399560		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000396056	ENST00000542250		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000396056	ENST00000296092		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000396056	ENST00000453164		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000399560	ENST00000396056		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000399560	ENST00000399560		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000399560	ENST00000542250		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000399560	ENST00000296092		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000399560	ENST00000453164		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000542250	ENST00000396056		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000542250	ENST00000399560		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000542250	ENST00000542250		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000542250	ENST00000296092		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000542250	ENST00000453164		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000296092	ENST00000396056		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000296092	ENST00000399560		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000296092	ENST00000542250		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000296092	ENST00000296092		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000296092	ENST00000453164		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000453164	ENST00000396056		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000453164	ENST00000399560		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000453164	ENST00000542250		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000453164	ENST00000296092		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000453164	ENST00000453164		ChiTaRS3.1			BF846631	ZNF35	chr3	44699040	+	ZNF35	chr3	44697743	+
intron-intron	ENST00000508198	ENST00000508198		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000508198	ENST00000435205		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000508198	ENST00000505231		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000435205	ENST00000508198		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000435205	ENST00000435205		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000435205	ENST00000505231		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000505231	ENST00000508198		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000505231	ENST00000435205		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-intron	ENST00000505231	ENST00000505231		ChiTaRS3.1			BF913771	FAM160A1	chr4	152365059	+	FAM160A1	chr4	152364569	+
intron-3CDS	ENST00000310325	ENST00000310325		ChiTaRS3.1			BX113081	CTSF	chr11	66333328	+	CTSF	chr11	66331457	-
intron-intron	ENST00000310325	ENST00000533168		ChiTaRS3.1			BX113081	CTSF	chr11	66333328	+	CTSF	chr11	66331457	-
intron-3CDS	ENST00000533168	ENST00000310325		ChiTaRS3.1			BX113081	CTSF	chr11	66333328	+	CTSF	chr11	66331457	-
intron-intron	ENST00000533168	ENST00000533168		ChiTaRS3.1			BX113081	CTSF	chr11	66333328	+	CTSF	chr11	66331457	-
3UTR-3CDS	ENST00000331886	ENST00000360863		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000331886	ENST00000523287		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000331886	ENST00000523437		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-intron	ENST00000331886	ENST00000519421		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000394147	ENST00000360863		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000394147	ENST00000523287		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000394147	ENST00000523437		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-intron	ENST00000394147	ENST00000519421		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000551156	ENST00000360863		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000551156	ENST00000523287		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3CDS	ENST00000551156	ENST00000523437		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-intron	ENST00000551156	ENST00000519421		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
intron-3CDS	ENST00000549079	ENST00000360863		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
intron-3CDS	ENST00000549079	ENST00000523287		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
intron-3CDS	ENST00000549079	ENST00000523437		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
intron-intron	ENST00000549079	ENST00000519421		ChiTaRS3.1			AW340041	DGKA	chr12	56347681	-	RGS22	chr8	101051221	+
3UTR-3UTR	ENST00000347136	ENST00000347136		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000347136	ENST00000372406		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000347136	ENST00000372410		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-intron	ENST00000347136	ENST00000415344		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000372406	ENST00000347136		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000372406	ENST00000372406		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000372406	ENST00000372410		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-intron	ENST00000372406	ENST00000415344		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000372410	ENST00000347136		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000372410	ENST00000372406		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-3UTR	ENST00000372410	ENST00000372410		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
3UTR-intron	ENST00000372410	ENST00000415344		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
intron-3UTR	ENST00000415344	ENST00000347136		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
intron-3UTR	ENST00000415344	ENST00000372406		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
intron-3UTR	ENST00000415344	ENST00000372410		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
intron-intron	ENST00000415344	ENST00000415344		ChiTaRS3.1			AA367701	GPR107	chr9	132898212	-	GPR107	chr9	132898073	+
intron-3CDS	ENST00000372954	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000372954	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000393608	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000393608	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000541172	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000541172	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000357558	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000357558	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000325721	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000325721	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000538431	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000538431	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000277465	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000277465	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000372948	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000372948	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000372938	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000372938	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000476727	ENST00000304636		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3CDS	ENST00000476727	ENST00000317840		ChiTaRS3.1			BQ182491	CIZ1	chr9	130928420	+	COL3A1	chr2	189860474	-
intron-3UTR	ENST00000600714	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000600714	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000601257	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000601257	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000301096	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000301096	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000544146	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000544146	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000536937	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000536937	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000597597	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000597597	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000541777	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000541777	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000545872	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000545872	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000594682	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000594682	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000391789	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000391789	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000596930	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000596930	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000597161	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000597161	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000598536	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000598536	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3UTR	ENST00000600457	ENST00000371817		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-intron	ENST00000600457	ENST00000464187		ChiTaRS3.1			AW608191	ZNF83	chr19	53144914	+	COL5A1	chr9	137735075	+
intron-3CDS	ENST00000450943	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000450943	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000450943	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000450943	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000450943	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000450943	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-3CDS	ENST00000354888	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000354888	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000354888	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000354888	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000354888	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000354888	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-3CDS	ENST00000393108	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393108	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393108	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393108	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393108	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393108	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-3CDS	ENST00000393110	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393110	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393110	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393110	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393110	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393110	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-3CDS	ENST00000393106	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393106	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393106	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393106	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393106	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000393106	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-3CDS	ENST00000393107	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000393107	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000393107	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000393107	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000393107	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000393107	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-3CDS	ENST00000409811	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000409811	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000409811	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000409811	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000409811	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-intron	ENST00000409811	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-3CDS	ENST00000425223	ENST00000260197		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000425223	ENST00000532451		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000425223	ENST00000525532		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000425223	ENST00000532694		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000425223	ENST00000534286		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
3UTR-intron	ENST00000425223	ENST00000527934		ChiTaRS3.1			BG315521	STEAP3	chr2	120022745	+	SORL1	chr11	121490521	-
intron-3UTR	ENST00000375377	ENST00000375377		ChiTaRS3.1			BM990771	KIAA1462	chr10	30301887	-	KIAA1462	chr10	30302470	-
intron-5UTR	ENST00000375377	ENST00000464386		ChiTaRS3.1			BM990771	KIAA1462	chr10	30301887	-	KIAA1462	chr10	30302470	-
intron-3UTR	ENST00000464386	ENST00000375377		ChiTaRS3.1			BM990771	KIAA1462	chr10	30301887	-	KIAA1462	chr10	30302470	-
intron-5UTR	ENST00000464386	ENST00000464386		ChiTaRS3.1			BM990771	KIAA1462	chr10	30301887	-	KIAA1462	chr10	30302470	-
intron-3CDS	ENST00000352131	ENST00000216281		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-3CDS	ENST00000352131	ENST00000334701		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-3CDS	ENST00000352131	ENST00000441629		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-intron	ENST00000352131	ENST00000558600		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-3CDS	ENST00000055077	ENST00000216281		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-3CDS	ENST00000055077	ENST00000334701		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-3CDS	ENST00000055077	ENST00000441629		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-intron	ENST00000055077	ENST00000558600		ChiTaRS3.1			CV353071	RFC2	chr7	73652566	-	HSP90AA1	chr14	102551034	+
intron-3CDS	ENST00000394023	ENST00000556440		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000394023	ENST00000553412		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000394023	ENST00000581056		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000394023	ENST00000577476		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000550164	ENST00000556440		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000550164	ENST00000553412		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000550164	ENST00000581056		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000550164	ENST00000577476		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000347471	ENST00000556440		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000347471	ENST00000553412		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000347471	ENST00000581056		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000347471	ENST00000577476		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000267064	ENST00000556440		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000267064	ENST00000553412		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000267064	ENST00000581056		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000267064	ENST00000577476		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000550859	ENST00000556440		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3CDS	ENST00000550859	ENST00000553412		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000550859	ENST00000581056		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-intron	ENST00000550859	ENST00000577476		ChiTaRS3.1			BE830381	SMARCC2	chr12	56574847	+	CEP95	chr17	62533765	-
intron-3UTR	ENST00000518322	ENST00000298875		ChiTaRS3.1			BE891031	FAM92A1	chr8	94731434	-	CPSF2	chr14	92629517	+
intron-3UTR	ENST00000522324	ENST00000298875		ChiTaRS3.1			BE891031	FAM92A1	chr8	94731434	-	CPSF2	chr14	92629517	+
intron-3UTR	ENST00000423990	ENST00000298875		ChiTaRS3.1			BE891031	FAM92A1	chr8	94731434	-	CPSF2	chr14	92629517	+
intron-3UTR	ENST00000517718	ENST00000298875		ChiTaRS3.1			BE891031	FAM92A1	chr8	94731434	-	CPSF2	chr14	92629517	+
intron-3UTR	ENST00000519679	ENST00000298875		ChiTaRS3.1			BE891031	FAM92A1	chr8	94731434	-	CPSF2	chr14	92629517	+
intron-3UTR	ENST00000520363	ENST00000298875		ChiTaRS3.1			BE891031	FAM92A1	chr8	94731434	-	CPSF2	chr14	92629517	+
intron-intron	ENST00000577830	ENST00000299576		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000309377		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000309357		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000529876		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000525005		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000534506		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000396648		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577830	ENST00000534147		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000299576		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000309377		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000309357		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000529876		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000525005		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000534506		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000396648		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000407144	ENST00000534147		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000299576		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000309377		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000309357		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000529876		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000525005		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000534506		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000396648		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000360238	ENST00000534147		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000299576		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000309377		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000309357		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000529876		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000525005		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000534506		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000396648		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000577840	ENST00000534147		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000299576		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000309377		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000309357		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000529876		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000525005		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000534506		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000396648		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-intron	ENST00000578357	ENST00000534147		ChiTaRS3.1			AI633361	CUEDC1	chr17	55940564	+	AKIP1	chr11	8936761	-
intron-3UTR	ENST00000357674	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000357674	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000357674	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000357674	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000314062	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000314062	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000314062	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000314062	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000346964	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000346964	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000346964	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000346964	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000419354	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000419354	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000419354	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000419354	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000452595	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000452595	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000452595	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000452595	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000422288	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000422288	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000422288	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000422288	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000448528	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000448528	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000448528	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000448528	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000443183	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000443183	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000443183	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000443183	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000450955	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000450955	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000450955	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000450955	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000392382	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000392382	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000392382	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000392382	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000485409	ENST00000357674		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000485409	ENST00000314062		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-3UTR	ENST00000485409	ENST00000346964		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000419354		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000452595		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000422288		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000448528		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000443183		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000450955		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000392382		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000485409	ENST00000485409		ChiTaRS3.1			AA226281	DLG1	chr3	196769903	+	DLG1	chr3	196769888	-
intron-intron	ENST00000369219	ENST00000267339		ChiTaRS3.1			AW860861	NBPF14	chr1	145112445	+	ANKRD10	chr13	111548772	+
intron-intron	ENST00000369219	ENST00000375758		ChiTaRS3.1			AW860861	NBPF14	chr1	145112445	+	ANKRD10	chr13	111548772	+
intron-intron	ENST00000369219	ENST00000489973		ChiTaRS3.1			AW860861	NBPF14	chr1	145112445	+	ANKRD10	chr13	111548772	+
intron-intron	ENST00000369219	ENST00000310847		ChiTaRS3.1			AW860861	NBPF14	chr1	145112445	+	ANKRD10	chr13	111548772	+
intron-intron	ENST00000395905	ENST00000395905		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000395905	ENST00000296144		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000395905	ENST00000496388		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000296144	ENST00000395905		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000296144	ENST00000296144		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000296144	ENST00000496388		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000496388	ENST00000395905		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000496388	ENST00000296144		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000496388	ENST00000496388		ChiTaRS3.1			AW811821	LRRC2	chr3	46614700	+	LRRC2	chr3	46589227	+
intron-intron	ENST00000368886	ENST00000445912		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000368886	ENST00000252034		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000368886	ENST00000358929		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000320492		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000414324		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000380562		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000380575		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000368886	ENST00000380584		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000458204		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000368886	ENST00000357036		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000368886	ENST00000429192		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000380553		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000380576		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000320399		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000368886	ENST00000466878		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000445912		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000479103	ENST00000252034		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000479103	ENST00000358929		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000320492		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000414324		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000380562		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000380575		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000479103	ENST00000380584		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000458204		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000479103	ENST00000357036		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3UTR	ENST00000479103	ENST00000429192		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000380553		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000380576		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000320399		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-intron	ENST00000479103	ENST00000466878		ChiTaRS3.1			AJ708711	IKZF5	chr10	124754242	+	ELN	chr7	73484056	+
intron-3CDS	ENST00000390548	ENST00000390237		ChiTaRS3.1			BF874651	IGHG1	chr2	89247282	+	IGKC	chr2	89156887	-
intron-intron	ENST00000458129	ENST00000458129		ChiTaRS3.1			BG987081	EPHA1	chr7	143088772	-	EPHA1	chr7	143091340	+
intron-intron	ENST00000458129	ENST00000275815		ChiTaRS3.1			BG987081	EPHA1	chr7	143088772	-	EPHA1	chr7	143091340	+
intron-intron	ENST00000275815	ENST00000458129		ChiTaRS3.1			BG987081	EPHA1	chr7	143088772	-	EPHA1	chr7	143091340	+
intron-intron	ENST00000275815	ENST00000275815		ChiTaRS3.1			BG987081	EPHA1	chr7	143088772	-	EPHA1	chr7	143091340	+
intron-intron	ENST00000410107	ENST00000435706		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000410107	ENST00000264331		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000410107	ENST00000542520		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000410107	ENST00000540199		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000410107	ENST00000475717		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000397423	ENST00000435706		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000397423	ENST00000264331		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000397423	ENST00000542520		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000397423	ENST00000540199		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000397423	ENST00000475717		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000495262	ENST00000435706		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000495262	ENST00000264331		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000495262	ENST00000542520		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000495262	ENST00000540199		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000495262	ENST00000475717		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000379597	ENST00000435706		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000379597	ENST00000264331		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000379597	ENST00000542520		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000379597	ENST00000540199		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000379597	ENST00000475717		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000316170	ENST00000435706		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000316170	ENST00000264331		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000316170	ENST00000542520		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000316170	ENST00000540199		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000316170	ENST00000475717		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000265012	ENST00000435706		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000265012	ENST00000264331		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000265012	ENST00000542520		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000265012	ENST00000540199		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-intron	ENST00000265012	ENST00000475717		ChiTaRS3.1			BE061671	GCNT2	chr6	10555080	-	TOP2B	chr3	25679027	+
intron-3UTR	ENST00000264657	ENST00000264657		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000264657	ENST00000585517		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000264657	ENST00000389272		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000264657	ENST00000588969		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000264657	ENST00000404395		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000264657	ENST00000590776		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-3UTR	ENST00000585517	ENST00000264657		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000585517	ENST00000585517		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000585517	ENST00000389272		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000585517	ENST00000588969		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000585517	ENST00000404395		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000585517	ENST00000590776		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-3UTR	ENST00000389272	ENST00000264657		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000389272	ENST00000585517		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000389272	ENST00000389272		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000389272	ENST00000588969		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000389272	ENST00000404395		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000389272	ENST00000590776		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-3UTR	ENST00000588969	ENST00000264657		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000588969	ENST00000585517		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000588969	ENST00000389272		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000588969	ENST00000588969		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000588969	ENST00000404395		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000588969	ENST00000590776		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-3UTR	ENST00000404395	ENST00000264657		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000404395	ENST00000585517		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000404395	ENST00000389272		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000404395	ENST00000588969		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000404395	ENST00000404395		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000404395	ENST00000590776		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-3UTR	ENST00000590776	ENST00000264657		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000590776	ENST00000585517		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000590776	ENST00000389272		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000590776	ENST00000588969		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000590776	ENST00000404395		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-intron	ENST00000590776	ENST00000590776		ChiTaRS3.1			BQ213821	STAT3	chr17	40466286	+	STAT3	chr17	40466075	-
intron-3UTR	ENST00000256104	ENST00000265361		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000256104	ENST00000544525		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000256104	ENST00000419255		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000256104	ENST00000536800		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000256104	ENST00000487621		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-3UTR	ENST00000518669	ENST00000265361		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000518669	ENST00000544525		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000518669	ENST00000419255		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000518669	ENST00000536800		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000518669	ENST00000487621		ChiTaRS3.1			BG290021	FABP4	chr8	82391672	+	SEMA3C	chr7	80371956	-
intron-intron	ENST00000371657	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371657	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371657	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371657	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000396059	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000396059	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000396059	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000396059	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371674	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371674	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371674	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371674	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371677	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371677	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371677	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000371677	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000340309	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000340309	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000340309	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000340309	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000420027	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000420027	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000420027	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000420027	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000415862	ENST00000520381		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000415862	ENST00000262215		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000415862	ENST00000517955		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
intron-intron	ENST00000415862	ENST00000518230		ChiTaRS3.1			BF841691	UBE2V1	chr20	48718902	+	ARFGEF1	chr8	68112631	+
3UTR-3CDS	ENST00000415585	ENST00000415585		ChiTaRS3.1			AA653671	CSTF2	chrX	100095725	-	CSTF2	chrX	100093304	+
3UTR-3CDS	ENST00000415585	ENST00000372972		ChiTaRS3.1			AA653671	CSTF2	chrX	100095725	-	CSTF2	chrX	100093304	+
3UTR-3CDS	ENST00000372972	ENST00000415585		ChiTaRS3.1			AA653671	CSTF2	chrX	100095725	-	CSTF2	chrX	100093304	+
3UTR-3CDS	ENST00000372972	ENST00000372972		ChiTaRS3.1			AA653671	CSTF2	chrX	100095725	-	CSTF2	chrX	100093304	+
intron-intron	ENST00000264852	ENST00000367837		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000527578		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000415177		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000367826		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000367824		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000445176		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000314674		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000367822		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000367820		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000264852	ENST00000525067		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000367837		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000527578		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000415177		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000367826		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000367824		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000445176		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000314674		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000367822		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000367820		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000393830	ENST00000525067		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000367837		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000527578		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000415177		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000367826		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000367824		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000445176		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000314674		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000367822		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000367820		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-intron	ENST00000463226	ENST00000525067		ChiTaRS3.1			CB051421	SIDT1	chr3	113307458	-	HBS1L	chr6	135314899	+
intron-3UTR	ENST00000587758	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587758	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587758	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587758	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587758	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587758	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587758	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000587758	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000587758	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588426	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000588426	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000588426	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000356783	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000356783	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000356783	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000291901	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000291901	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000291901	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000536926	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000536926	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000536926	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000588981	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000588981	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000588981	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000587465	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000587465	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000587465	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000585321	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000585321	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000585321	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000587758		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000588426		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000356783		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000291901		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000536926		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000588981		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3UTR	ENST00000592920	ENST00000587465		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000592920	ENST00000585321		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-intron	ENST00000592920	ENST00000592920		ChiTaRS3.1			BE962861	TNNT1	chr19	55648486	-	TNNT1	chr19	55644231	+
intron-3CDS	ENST00000396198	ENST00000295897		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000396198	ENST00000415165		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000396198	ENST00000503124		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000396198	ENST00000509063		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000396198	ENST00000401494		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3UTR	ENST00000396198	ENST00000505649		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000330807	ENST00000295897		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000330807	ENST00000415165		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000330807	ENST00000503124		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000330807	ENST00000509063		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000330807	ENST00000401494		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3UTR	ENST00000330807	ENST00000505649		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000335854	ENST00000295897		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000335854	ENST00000415165		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000335854	ENST00000503124		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000335854	ENST00000509063		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000335854	ENST00000401494		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3UTR	ENST00000335854	ENST00000505649		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000498636	ENST00000295897		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000498636	ENST00000415165		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000498636	ENST00000503124		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000498636	ENST00000509063		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3CDS	ENST00000498636	ENST00000401494		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
intron-3UTR	ENST00000498636	ENST00000505649		ChiTaRS3.1			AI207561	ALAS2	chrX	55039953	+	ALB	chr4	74285286	+
Frame-shit	ENST00000310137	ENST00000310137		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000393979		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409372		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000443702		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000409738		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
5CDS-intron	ENST00000310137	ENST00000461478		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000393979	ENST00000310137		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000393979		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409372		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000443702		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000409738		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000393979	ENST00000461478		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409372	ENST00000310137		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000393979		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409372		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000443702		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000409738		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409372	ENST00000461478		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000443702	ENST00000310137		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000393979		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409372		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000443702		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000409738		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000443702	ENST00000461478		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000409738	ENST00000310137		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000393979		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409372		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000443702		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000409738		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000409738	ENST00000461478		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000461478	ENST00000310137		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000393979		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409372		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000443702		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000409738		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-intron	ENST00000461478	ENST00000461478		ChiTaRS3.1			AI821591	RBM14	chr11	66393011	-	RBM14	chr11	66392305	+
intron-3CDS	ENST00000380934	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380934	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000380934	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380959	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000380959	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380953	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000380953	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397575	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000397575	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397581	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000397581	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000397579	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000397579	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000543693	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000543693	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380924	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000380924	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000380934		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000380959		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000380953		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000397575		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000397581		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000397579		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000543693		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3CDS	ENST00000380921	ENST00000380924		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-intron	ENST00000380921	ENST00000380921		ChiTaRS3.1			AW383911	NFIB	chr9	14088064	-	NFIB	chr9	14146809	-
intron-3UTR	ENST00000287272	ENST00000249700		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000287272	ENST00000539962		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000287272	ENST00000435126		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-3UTR	ENST00000453357	ENST00000249700		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000453357	ENST00000539962		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000453357	ENST00000435126		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-3UTR	ENST00000404895	ENST00000249700		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000404895	ENST00000539962		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000404895	ENST00000435126		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-3UTR	ENST00000420357	ENST00000249700		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000420357	ENST00000539962		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000420357	ENST00000435126		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-3UTR	ENST00000416672	ENST00000249700		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000416672	ENST00000539962		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000416672	ENST00000435126		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-3UTR	ENST00000449677	ENST00000249700		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000449677	ENST00000539962		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-intron	ENST00000449677	ENST00000435126		ChiTaRS3.1			BE699391	UNC5D	chr8	35646220	-	TMOD2	chr15	52107588	+
intron-3UTR	ENST00000261772	ENST00000388825		ChiTaRS3.1			BF848871	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000261772	ENST00000521722		ChiTaRS3.1			BF848871	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000261772	ENST00000517973		ChiTaRS3.1			BF848871	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-3UTR	ENST00000564359	ENST00000388825		ChiTaRS3.1			BF848871	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000564359	ENST00000521722		ChiTaRS3.1			BF848871	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000564359	ENST00000517973		ChiTaRS3.1			BF848871	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-5UTR	ENST00000378643	ENST00000378643		ChiTaRS3.1			BQ224571	FANCG	chr9	35076495	-	FANCG	chr9	35079525	-
intron-intron	ENST00000378643	ENST00000476212		ChiTaRS3.1			BQ224571	FANCG	chr9	35076495	-	FANCG	chr9	35079525	-
intron-5UTR	ENST00000476212	ENST00000378643		ChiTaRS3.1			BQ224571	FANCG	chr9	35076495	-	FANCG	chr9	35079525	-
intron-intron	ENST00000476212	ENST00000476212		ChiTaRS3.1			BQ224571	FANCG	chr9	35076495	-	FANCG	chr9	35079525	-
intron-3UTR	ENST00000344749	ENST00000344749		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000344749	ENST00000262965		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000344749	ENST00000453954		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000344749	ENST00000395423		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000344749	ENST00000588136		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000262965	ENST00000344749		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000262965	ENST00000262965		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000262965	ENST00000453954		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000262965	ENST00000395423		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000262965	ENST00000588136		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000453954	ENST00000344749		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000453954	ENST00000262965		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000453954	ENST00000453954		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000453954	ENST00000395423		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000453954	ENST00000588136		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000395423	ENST00000344749		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000395423	ENST00000262965		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000395423	ENST00000453954		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000395423	ENST00000395423		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000395423	ENST00000588136		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000588136	ENST00000344749		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000588136	ENST00000262965		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000588136	ENST00000453954		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-3UTR	ENST00000588136	ENST00000395423		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000588136	ENST00000588136		ChiTaRS3.1			AL079531	TCF3	chr19	1611629	+	TCF3	chr19	1611585	-
intron-intron	ENST00000585916	ENST00000585916		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000585916	ENST00000545673		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000585916	ENST00000324794		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000585916	ENST00000590944		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000545673	ENST00000585916		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000545673	ENST00000545673		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000545673	ENST00000324794		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000545673	ENST00000590944		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000324794	ENST00000585916		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000324794	ENST00000545673		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000324794	ENST00000324794		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000324794	ENST00000590944		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000590944	ENST00000585916		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000590944	ENST00000545673		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000590944	ENST00000324794		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000590944	ENST00000590944		ChiTaRS3.1			AA244401	PIAS2	chr18	44400956	-	PIAS2	chr18	44400857	+
intron-intron	ENST00000378004	ENST00000378004		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000378004	ENST00000274498		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000378004	ENST00000486650		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000274498	ENST00000378004		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000274498	ENST00000274498		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000274498	ENST00000486650		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000486650	ENST00000378004		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000486650	ENST00000274498		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-intron	ENST00000486650	ENST00000486650		ChiTaRS3.1			BQ339731	ARHGAP26	chr5	142434004	-	ARHGAP26	chr5	142513670	-
intron-3UTR	ENST00000291442	ENST00000291442		ChiTaRS3.1			H20021	NR2F6	chr19	17342795	+	NR2F6	chr19	17343082	-
intron-intron	ENST00000482918	ENST00000482918		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-3UTR	ENST00000482918	ENST00000497473		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-3UTR	ENST00000482918	ENST00000470914		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000482918	ENST00000545602		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000482918	ENST00000489468		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-intron	ENST00000497473	ENST00000482918		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-3UTR	ENST00000497473	ENST00000497473		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-3UTR	ENST00000497473	ENST00000470914		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-intron	ENST00000497473	ENST00000545602		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-intron	ENST00000497473	ENST00000489468		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-intron	ENST00000470914	ENST00000482918		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-3UTR	ENST00000470914	ENST00000497473		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-3UTR	ENST00000470914	ENST00000470914		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-intron	ENST00000470914	ENST00000545602		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
3UTR-intron	ENST00000470914	ENST00000489468		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000545602	ENST00000482918		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-3UTR	ENST00000545602	ENST00000497473		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-3UTR	ENST00000545602	ENST00000470914		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000545602	ENST00000545602		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000545602	ENST00000489468		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000489468	ENST00000482918		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-3UTR	ENST00000489468	ENST00000497473		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-3UTR	ENST00000489468	ENST00000470914		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000489468	ENST00000545602		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000489468	ENST00000489468		ChiTaRS3.1			BG035981	IAH1	chr2	9628924	+	IAH1	chr2	9628876	-
intron-intron	ENST00000392636	ENST00000392636		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000392636	ENST00000413681		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000392636	ENST00000549590		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000392636	ENST00000455480		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000392636	ENST00000313698		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000413681	ENST00000392636		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000413681	ENST00000413681		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000413681	ENST00000549590		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000413681	ENST00000455480		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000413681	ENST00000313698		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000549590	ENST00000392636		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000549590	ENST00000413681		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000549590	ENST00000549590		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000549590	ENST00000455480		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000549590	ENST00000313698		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000455480	ENST00000392636		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000455480	ENST00000413681		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000455480	ENST00000549590		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000455480	ENST00000455480		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000455480	ENST00000313698		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000313698	ENST00000392636		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000313698	ENST00000413681		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000313698	ENST00000549590		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000313698	ENST00000455480		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-intron	ENST00000313698	ENST00000313698		ChiTaRS3.1			AW886471	ACAD10	chr12	112166158	+	ACAD10	chr12	112166380	-
intron-3CDS	ENST00000241052	ENST00000440884		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000416682		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000429436		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000303622		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000216288		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000553942		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000335102		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000241052	ENST00000561071		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000440884		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000416682		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000429436		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000303622		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000216288		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000553942		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000335102		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000534710	ENST00000561071		ChiTaRS3.1			BI028161	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
3UTR-3UTR	ENST00000429277	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
3UTR-3UTR	ENST00000352360	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
3UTR-3UTR	ENST00000458213	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
3UTR-3UTR	ENST00000263066	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
3UTR-3UTR	ENST00000361373	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
intron-3UTR	ENST00000372066	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
intron-3UTR	ENST00000372056	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
intron-3UTR	ENST00000310944	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
intron-3UTR	ENST00000542786	ENST00000371477		ChiTaRS3.1			BM014881	LDB3	chr10	88495287	+	CDC5L	chr6	44417857	+
intron-intron	ENST00000295754	ENST00000295754		ChiTaRS3.1			BQ883621	TGFBR2	chr3	30665359	+	TGFBR2	chr3	30663049	+
intron-intron	ENST00000295754	ENST00000359013		ChiTaRS3.1			BQ883621	TGFBR2	chr3	30665359	+	TGFBR2	chr3	30663049	+
intron-intron	ENST00000359013	ENST00000295754		ChiTaRS3.1			BQ883621	TGFBR2	chr3	30665359	+	TGFBR2	chr3	30663049	+
intron-intron	ENST00000359013	ENST00000359013		ChiTaRS3.1			BQ883621	TGFBR2	chr3	30665359	+	TGFBR2	chr3	30663049	+
intron-intron	ENST00000378609	ENST00000368693		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000378609	ENST00000368695		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000378609	ENST00000449042		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000378609	ENST00000368689		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000378609	ENST00000477963		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000472614	ENST00000368693		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000472614	ENST00000368695		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000472614	ENST00000449042		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000472614	ENST00000368689		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000472614	ENST00000477963		ChiTaRS3.1			AA603331	GNB1	chr1	1717201	+	FANK1	chr10	127605124	-
intron-intron	ENST00000367635	ENST00000367635		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000367635	ENST00000367634		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000367635	ENST00000477383		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000367634	ENST00000367635		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000367634	ENST00000367634		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000367634	ENST00000477383		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000477383	ENST00000367635		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000477383	ENST00000367634		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000477383	ENST00000477383		ChiTaRS3.1			BE162771	RALGPS2	chr1	178820317	+	RALGPS2	chr1	178820252	-
intron-intron	ENST00000408667	ENST00000204566		ChiTaRS3.1			BF884941	MIR548F1	chr1	186315271	-	SPG21	chr15	65279724	-
intron-intron	ENST00000408667	ENST00000559199		ChiTaRS3.1			BF884941	MIR548F1	chr1	186315271	-	SPG21	chr15	65279724	-
intron-intron	ENST00000408667	ENST00000433215		ChiTaRS3.1			BF884941	MIR548F1	chr1	186315271	-	SPG21	chr15	65279724	-
intron-intron	ENST00000408667	ENST00000416889		ChiTaRS3.1			BF884941	MIR548F1	chr1	186315271	-	SPG21	chr15	65279724	-
intron-intron	ENST00000408667	ENST00000560564		ChiTaRS3.1			BF884941	MIR548F1	chr1	186315271	-	SPG21	chr15	65279724	-
intron-intron	ENST00000376300	ENST00000579419		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000376300	ENST00000357896		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000376300	ENST00000395418		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000376300	ENST00000585089		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000376300	ENST00000585313		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000376300	ENST00000578122		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000376300	ENST00000578985		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000579419		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000357896		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000395418		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000585089		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000585313		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000578122		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000319432	ENST00000578985		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000579419		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000357896		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000395418		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000585089		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000585313		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000578122		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000460781	ENST00000578985		ChiTaRS3.1			BF800491	CCDC93	chr2	118688675	+	IFT20	chr17	26657459	+
intron-intron	ENST00000216361	ENST00000442956		ChiTaRS3.1			AI280231	COCH	chr14	31364201	-	LINC00299	chr2	8409120	+
intron-intron	ENST00000396618	ENST00000442956		ChiTaRS3.1			AI280231	COCH	chr14	31364201	-	LINC00299	chr2	8409120	+
3UTR-intron	ENST00000475087	ENST00000442956		ChiTaRS3.1			AI280231	COCH	chr14	31364201	-	LINC00299	chr2	8409120	+
intron-intron	ENST00000460581	ENST00000442956		ChiTaRS3.1			AI280231	COCH	chr14	31364201	-	LINC00299	chr2	8409120	+
intron-intron	ENST00000382493	ENST00000442956		ChiTaRS3.1			AI280231	COCH	chr14	31364201	-	LINC00299	chr2	8409120	+
intron-intron	ENST00000359019	ENST00000359019		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-3UTR	ENST00000359019	ENST00000334822		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-3UTR	ENST00000359019	ENST00000426126		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-intron	ENST00000359019	ENST00000550789		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-intron	ENST00000334822	ENST00000359019		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-3UTR	ENST00000334822	ENST00000334822		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-3UTR	ENST00000334822	ENST00000426126		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-intron	ENST00000334822	ENST00000550789		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-intron	ENST00000426126	ENST00000359019		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-3UTR	ENST00000426126	ENST00000334822		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-3UTR	ENST00000426126	ENST00000426126		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
3UTR-intron	ENST00000426126	ENST00000550789		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-intron	ENST00000550789	ENST00000359019		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-3UTR	ENST00000550789	ENST00000334822		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-3UTR	ENST00000550789	ENST00000426126		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-intron	ENST00000550789	ENST00000550789		ChiTaRS3.1			BG120601	ZDHHC17	chr12	77246458	-	ZDHHC17	chr12	77246497	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ224380	ETV6	chr12	12036826	+	RUNX1	chr21	36407500	-
5UTR-3CDS	ENST00000360612	ENST00000389266		ChiTaRS3.1			BC021081	PIM3	chr22	50354422	-	GARS	chr7	30655591	+
intron-intron	ENST00000602662	ENST00000356286		ChiTaRS3.1			BE221041	MINOS1-NBL1	chr1	19984852	-	RBCK1	chr20	402469	-
intron-intron	ENST00000602662	ENST00000353660		ChiTaRS3.1			BE221041	MINOS1-NBL1	chr1	19984852	-	RBCK1	chr20	402469	-
intron-intron	ENST00000602662	ENST00000382181		ChiTaRS3.1			BE221041	MINOS1-NBL1	chr1	19984852	-	RBCK1	chr20	402469	-
intron-intron	ENST00000602662	ENST00000475269		ChiTaRS3.1			BE221041	MINOS1-NBL1	chr1	19984852	-	RBCK1	chr20	402469	-
intron-intron	ENST00000602662	ENST00000400245		ChiTaRS3.1			BE221041	MINOS1-NBL1	chr1	19984852	-	RBCK1	chr20	402469	-
intron-intron	ENST00000602662	ENST00000400247		ChiTaRS3.1			BE221041	MINOS1-NBL1	chr1	19984852	-	RBCK1	chr20	402469	-
5CDS-intron	ENST00000355086	ENST00000237163		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000355086	ENST00000349129		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000355086	ENST00000536812		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000355086	ENST00000369739		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000355086	ENST00000484282		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000357825	ENST00000237163		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000357825	ENST00000349129		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000357825	ENST00000536812		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000357825	ENST00000369739		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000357825	ENST00000484282		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000543397	ENST00000237163		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000543397	ENST00000349129		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000543397	ENST00000536812		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000543397	ENST00000369739		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
5CDS-intron	ENST00000543397	ENST00000484282		ChiTaRS3.1			T07741	SRGAP1	chr12	64488723	-	DOPEY1	chr6	83833144	+
Frame-shit	ENST00000261574	ENST00000261574		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000261574	ENST00000490680		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000261574	ENST00000539640		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
5CDS-intron	ENST00000261574	ENST00000493492		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000490680	ENST00000261574		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000490680	ENST00000490680		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000490680	ENST00000539640		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
5CDS-intron	ENST00000490680	ENST00000493492		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000539640	ENST00000261574		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000539640	ENST00000490680		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
Frame-shit	ENST00000539640	ENST00000539640		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
5CDS-intron	ENST00000539640	ENST00000493492		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
intron-3CDS	ENST00000493492	ENST00000261574		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
intron-3CDS	ENST00000493492	ENST00000490680		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
intron-3CDS	ENST00000493492	ENST00000539640		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
intron-intron	ENST00000493492	ENST00000493492		ChiTaRS3.1			CN352531	IPO5	chr13	98662153	-	IPO5	chr13	98655171	+
intron-3CDS	ENST00000369904	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369904	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369904	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369904	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369904	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369904	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369904	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409267	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369907	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000438534	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369909	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000409138	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000369904		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000409267		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000369907		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000438534		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000369909		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000409138		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-3CDS	ENST00000369903	ENST00000369903		ChiTaRS3.1			BP217061	PSRC1	chr1	109822399	-	PSRC1	chr1	109824576	-
intron-intron	ENST00000265138	ENST00000469796		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000265138	ENST00000340800		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000265138	ENST00000348502		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000265138	ENST00000504383		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000503192	ENST00000469796		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000503192	ENST00000340800		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000503192	ENST00000348502		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000503192	ENST00000504383		ChiTaRS3.1			AI133031	ARRDC3	chr5	90678709	+	ACSL4	chrX	108971287	-
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			H47601	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			H47601	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			H47601	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			H47601	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-3CDS	ENST00000271843	ENST00000271843		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000271843	ENST00000356648		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000271843	ENST00000368589		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000271843	ENST00000471173		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-3CDS	ENST00000356648	ENST00000271843		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000356648	ENST00000356648		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000356648	ENST00000368589		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000356648	ENST00000471173		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-3CDS	ENST00000368589	ENST00000271843		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000368589	ENST00000356648		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000368589	ENST00000368589		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000368589	ENST00000471173		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-3CDS	ENST00000471173	ENST00000271843		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000471173	ENST00000356648		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000471173	ENST00000368589		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
intron-5UTR	ENST00000471173	ENST00000471173		ChiTaRS3.1			AA748731	JTB	chr1	153947248	+	JTB	chr1	153949695	-
Frame-shit	ENST00000295598	ENST00000295598		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000295598	ENST00000537345		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000295598	ENST00000369496		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
5CDS-intron	ENST00000295598	ENST00000491156		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000537345	ENST00000295598		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000537345	ENST00000537345		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000537345	ENST00000369496		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
5CDS-intron	ENST00000537345	ENST00000491156		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000369496	ENST00000295598		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000369496	ENST00000537345		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
Frame-shit	ENST00000369496	ENST00000369496		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
5CDS-intron	ENST00000369496	ENST00000491156		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
intron-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
intron-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
intron-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
intron-intron	ENST00000491156	ENST00000491156		ChiTaRS3.1			BE837611	ATP1A1	chr1	116944241	+	ATP1A1	chr1	116936185	+
intron-intron	ENST00000389413	ENST00000326956		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389413	ENST00000417664		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389413	ENST00000371320		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389413	ENST00000371319		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389413	ENST00000357475		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000409483	ENST00000326956		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000409483	ENST00000417664		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000409483	ENST00000371320		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000409483	ENST00000371319		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000409483	ENST00000357475		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389416	ENST00000326956		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389416	ENST00000417664		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389416	ENST00000371320		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389416	ENST00000371319		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389416	ENST00000357475		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389418	ENST00000326956		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389418	ENST00000417664		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389418	ENST00000371320		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389418	ENST00000371319		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000389418	ENST00000357475		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000404321	ENST00000326956		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000404321	ENST00000417664		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000404321	ENST00000371320		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000404321	ENST00000371319		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000404321	ENST00000357475		ChiTaRS3.1			T05771	PTPRN2	chr7	158264577	-	SSBP3	chr1	54813540	+
intron-intron	ENST00000578312	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000578312	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000578312	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000578312	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000578312	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000578312	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000578312	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000262394	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000579733	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000583193	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000581185	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
intron-intron	ENST00000427287	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000578312		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000262394		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000579733		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000583193		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000581185		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000427287		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-intron	ENST00000348811	ENST00000348811		ChiTaRS3.1			AI807901	WSB1	chr17	25639748	-	WSB1	chr17	25638579	+
3UTR-3CDS	ENST00000397843	ENST00000397843		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000397843	ENST00000356641		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000397843	ENST00000532993		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000356641	ENST00000397843		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000356641	ENST00000356641		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000356641	ENST00000532993		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000532993	ENST00000397843		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000532993	ENST00000356641		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000532993	ENST00000532993		ChiTaRS3.1			AI291721	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BQ331541	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
3UTR-3UTR	ENST00000315717	ENST00000315717		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000315717	ENST00000295685		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000315717	ENST00000477992		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000295685	ENST00000315717		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000295685	ENST00000295685		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000295685	ENST00000477992		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000477992	ENST00000315717		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000477992	ENST00000295685		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
3UTR-3UTR	ENST00000477992	ENST00000477992		ChiTaRS3.1			CB242231	ARPC2	chr2	219118749	-	ARPC2	chr2	219118679	+
intron-intron	ENST00000398540	ENST00000573169		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-5UTR	ENST00000398540	ENST00000573584		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-intron	ENST00000542259	ENST00000573169		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-5UTR	ENST00000542259	ENST00000573584		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-intron	ENST00000497757	ENST00000573169		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-5UTR	ENST00000497757	ENST00000573584		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-intron	ENST00000478263	ENST00000573169		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
intron-5UTR	ENST00000478263	ENST00000573584		ChiTaRS3.1			DA165761	FRMD4B	chr3	69268374	-	NUP88	chr17	5322994	-
5CDS-intron	ENST00000318911	ENST00000390394		ChiTaRS3.1			BC011661	CYC1	chr8	145151098	-	TRBV20-1	chr16	2014815	-
intron-intron	ENST00000347401	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000347401	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000347401	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000347401	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000353578	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000353578	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000353578	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000353578	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000295550	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000295550	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000295550	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000295550	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000472056	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000472056	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000472056	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000472056	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000409809	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000409809	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000409809	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000409809	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000346358	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000346358	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000346358	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000346358	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392004	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392004	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392004	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392004	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392003	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392003	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392003	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000392003	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000473258	ENST00000300880		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000473258	ENST00000449228		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000473258	ENST00000341983		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-intron	ENST00000473258	ENST00000439096		ChiTaRS3.1			BF739081	COL6A3	chr2	238243503	+	BBC3	chr19	47733198	-
intron-3CDS	ENST00000357214	ENST00000267082		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-3CDS	ENST00000357214	ENST00000422257		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-3CDS	ENST00000357214	ENST00000338737		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-3CDS	ENST00000357214	ENST00000550743		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-3CDS	ENST00000468598	ENST00000267082		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	I